Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	G	C	tCw	wGa	tC	Ga	tC_mutation	tC_mutation_to_G	tC_mutation_to_T	APOBEC_mutation	APOBEC_mutation_to_G	APOBEC_mutation_to_T	"CONTEXT(+/-20)"	g_counts	c_counts	tcw_counts	wga_counts	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
GABRD	2563	broad.mit.edu	37	chr1	1960873	1960873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacaggacctgctccctGgggtgggcatgggggtgggg	21	8	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1960873	T	T	1960873	1	4	1	0	1	0	0	0	0	0	0	0	6229	1363	47	2		2	GABRD	1	1960873	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08		1960873	247289748	1	1											
ARHGEF16	27237	broad.mit.edu	37	chr1	3391185	3391185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgttgaccaccctgcaGccccacacggggtctggcgt	12	16	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3391185	T	T	3391185	1	4	1	0	1	0	0	0	0	0	0	0	901	986	34	3		3	ARHGEF16	1	3391185	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1430312	3391185	245859436	2	2											
VPS13D	55187	broad.mit.edu	37	chr1	12428682	12428682	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagagccagtttgactgtttCatgtgtgggagggtggagtg	18	4	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12428682	T	T	12428682	1	4	1	0	1	0	0	0	0	0	0	0	17319	841	29	4		4	VPS13D	1	12428682	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	9037497	12428682	236821939	3	3											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17990971	17990971	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtgggacctggagagccctCccgtgtgcctgactgtgggg	17	11	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17990971	G	G	17990971	3	3	1	1	0	0	0	0	1	0	0	0	897	855	30	4	2988	4	ARHGEF10L	1	17990971	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	5562289	17990971	231259650	4	4											
HTR6	3362	broad.mit.edu	37	chr1	20005133	20005133	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgaagcacagcaggaaggCcctgaaggccagcctgacgc	13	14	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20005133	G	G	20005133	3	3	1	1	0	0	0	0	1	0	0	0	7521	739	26	4	794	4	HTR6	1	20005133	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2014162	20005133	229245488	5	5											
MAN1C1	57134	broad.mit.edu	37	chr1	26080122	26080122	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgcgaccatgcccaccaTttgtgttttgtctgggtggt	11	10	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26080122	C	C	26080122	1	2	1	0	1	0	0	0	0	0	0	0	9305	1508	52	5		5	MAN1C1	1	26080122	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	6074989	26080122	223170499	6	6											
NR0B2	8431	broad.mit.edu	37	chr1	27240194	27240194	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgctggtcctggggagGcagctgccagaaggatggca	17	12	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27240194	A	A	27240194	3	1	1	1	0	0	0	0	1	0	0	0	10709	1203	42	4	543	4	NR0B2	1	27240194	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1160072	27240194	222010427	7	7											
AHDC1	27245	broad.mit.edu	37	chr1	27874554	27874554	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggaagccttggccaaagGtgccatcggaaggcgtggac	16	9	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27874554	A	A	27874554	3	1	1	1	0	0	0	0	1	0	0	0	412	1261	44	4	742	4	AHDC1	1	27874554	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	634360	27874554	221376067	8	8											
GRIK3	2899	broad.mit.edu	37	chr1	37315869	37315869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgaacggccaccccaccCccaggtcggacagtccttcc	9	21	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37315869	A	A	37315869	1	1	1	0	1	0	0	0	0	0	0	0	6841	638	22	2		2	GRIK3	1	37315869	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	9441315	37315869	211934752	9	9											
RRAGC	64121	broad.mit.edu	37	chr1	39305209	39305209	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaagctggcacagagccccGacgctgggattcagactaga	13	11	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39305209	A	A	39305209	1	1	1	0	1	0	0	0	0	0	0	0	13785	1073	37	4		4	RRAGC	1	39305209	3'UTR	SNP	G	TCGA-05-4244-01A-01D-1105-08	1989340	39305209	209945412	10	10											
KIAA0467	23334	broad.mit.edu	37	chr1	43888542	43888542	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccattggcacaccagcaccGgcccggcacaaggtaagctg	11	16	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43888542	T	T	43888542	1	4	1	0	1	0	0	0	0	0	0	0	8248	1131	39	1		1	KIAA0467	1	43888542	5'Flank	SNP	G	TCGA-05-4244-01A-01D-1105-08	4583333	43888542	205362079	11	11											
PRPF38A	84950	broad.mit.edu	37	chr1	52878240	52878240	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcctcgagttagtgctctgGaagaggacatggatgatgtg	15	6	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52878240	T	T	52878240	4	4	1	1	0	0	0	0	0	1	0	0	12673	1175	41	3	571	3	PRPF38A	1	52878240	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	8989698	52878240	196372381	12	12											
C1orf177	163747	broad.mit.edu	37	chr1	55279583	55279583	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggttttttctaaacttcccCgaaacccgaaaacccctaca	5	14	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55279583	G	G	55279583	3	3	1	1	0	0	0	0	1	0	0	0	2037	644	23	4	885	4	C1orf177	1	55279583	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2401343	55279583	193971038	13	13											
DOCK7	85440	broad.mit.edu	37	chr1	62941022	62941022	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaattggtgttaagatgaTctgagtaaaagagcatctgt	10	4	3	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62941022	A	A	62941022	3	1	1	1	0	0	0	0	1	0	0	0	4732	1449	50	5	476	5	DOCK7	1	62941022	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	7661439	62941022	186309599	14	14											
DOCK7	85440	broad.mit.edu	37	chr1	63048887	63048887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacggctgtataggcttcCtttgaaaattctgaacagct	8	9	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63048887	A	A	63048887	3	1	1	1	0	0	0	0	1	0	0	0	4732	680	24	2	4626	2	DOCK7	1	63048887	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	107865	63048887	186201734	15	15											
LRRC7	57554	broad.mit.edu	37	chr1	70446281	70446281	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcagtcaccaagtgttttCaccatttttttttttagtat	5	7	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70446281	G	G	70446281	1	3	1	0	1	0	0	0	0	0	0	0	9107	841	29	4		4	LRRC7	1	70446281	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	7397394	70446281	178804340	16	16											
CTH	1491	broad.mit.edu	37	chr1	70904862	70904862	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgaagatcaaatcttcctGagtaattaaatggaccaaca	7	7	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70904862	T	T	70904862	1	4	1	0	1	0	0	0	0	0	0	0	4043	1305	45	3		3	CTH	1	70904862	3'UTR	SNP	G	TCGA-05-4244-01A-01D-1105-08	458581	70904862	178345759	17	17											
HS2ST1	9653	broad.mit.edu	37	chr1	87380943	87380943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaacctggggtctggctcGggggctgaaagcggtttcaa	15	9	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87380943	T	T	87380943	1	4	1	0	1	0	0	0	0	0	0	0	7429	1131	39	1		1	HS2ST1	1	87380943	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	16476081	87380943	161869678	18	18											
GBP4	115361	broad.mit.edu	37	chr1	89662952	89662953	+	Frame_Shift_Ins	INS	-	G	G													tggttttccactagacaaatINSgggggccatcatgatggatt							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89662953	G	G	89662952	7	5	1	1	0	1	1	0	0	0	0	0	6338	1464	51	0	1886	0	GBP4	1	89662952	Frame_Shift_Ins	INS	-	TCGA-05-4244-01A-01D-1105-08	2282009	89662952	159587669	19	19											
COL11A1	1301	broad.mit.edu	37	chr1	103404446	103404446	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacaaatatataaaattataGaatgatataactgcagaggt	6	4	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103404446	T	T	103404446	1	4	1	0	1	0	0	0	0	0	0	0	3699	957	33	3		3	COL11A1	1	103404446	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	13741494	103404446	145846175	20	20											
CD53	963	broad.mit.edu	37	chr1	111441857	111441857	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagagacttgtttcatctcCggaaatgcaaaaccatttat	7	8	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111441857	G	G	111441857	1	3	1	0	1	0	0	0	0	0	0	0	3053	667	23	4		4	CD53	1	111441857	3'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	8037411	111441857	137808764	21	21											
DCLRE1B	64858	broad.mit.edu	37	chr1	114449871	114449871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttttaatgtatagactggGgcctcgcagtgttgccgagg	13	7	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114449871	A	A	114449871	1	1	1	0	1	0	0	0	0	0	0	0	4328	1247	43	4		4	DCLRE1B	1	114449871	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	3008014	114449871	134800750	22	22											
PHGDH	26227	broad.mit.edu	37	chr1	120263891	120263891	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcagggctggcacaggTgtggacaatgtggatctgga	19	6	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120263891	A	A	120263891	2	1	1	1	0	0	0	0	0	0	0	1	11936	1683	59	5		5	PHGDH	1	120263891	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	5814020	120263891	128986730	23	23											
NBPF10	100132406	broad.mit.edu	37	chr1	145509135	145509135	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagtattatgtccctctaaTggactcctctccctgcttct	5	13	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145509135	A	A	145509135	1	1	1	0	1	0	0	0	0	0	0	0	10287	1479	51	5		5	NBPF10	1	145509135	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	25245244	145509135	103741486	24	24											
TCHHL1	126637	broad.mit.edu	37	chr1	152058170	152058170	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccagggactttctatttTcatctcctgctgtggattcc	7	11	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152058170	C	C	152058170	3	2	1	1	0	0	0	0	1	0	0	0	15823	1783	62	5	730	5	TCHHL1	1	152058170	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	6549035	152058170	97192451	25	25											
NUP210L	91181	broad.mit.edu	37	chr1	154030838	154030838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataagcttaatctatgtgtaTtgttttaagttggtttttaa	7	2	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154030838	C	C	154030838	1	2	1	0	1	0	0	0	0	0	0	0	10856	1508	52	5		5	NUP210L	1	154030838	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	1972668	154030838	95219783	26	26											
FLAD1	80308	broad.mit.edu	37	chr1	154956053	154956053	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaggggtacggatgccCaaggtagagcagacacttga	13	7	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154956053	T	T	154956053	1	4	1	0	1	0	0	0	0	0	0	0	5977	609	21	4		4	FLAD1	1	154956053	5'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	925215	154956053	94294568	27	27											
PRCC	5546	broad.mit.edu	37	chr1	156761675	156761675	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattaaaaaaacacacacacAcaaaagacaaaactgtatca	2	9	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156761675	T	T	156761675	1	4	1	0	1	0	0	0	0	0	0	0	12553	174	6	5		5	PRCC	1	156761675	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	1805622	156761675	92488946	28	28											
OR10K2	391107	broad.mit.edu	37	chr1	158390272	158390272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcactgagtagcgcagtgGgttacagatggctatgtaac	13	7	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158390272	T	T	158390272	3	4	1	1	0	0	0	0	1	0	0	0	11008	1232	43	2	555	2	OR10K2	1	158390272	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1628597	158390272	90860349	29	29											
SPTA1	6708	broad.mit.edu	37	chr1	158624529	158624529	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactccctccactggtgcagCctgttgttgctgaataaaaa	8	11	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158624529	G	G	158624529	3	3	1	1	0	0	0	0	1	0	0	0	15234	739	26	4	4479	4	SPTA1	1	158624529	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	234257	158624529	90626092	30	30											
ATP1A4	480	broad.mit.edu	37	chr1	160129070	160129070	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgttagagacaacagaTgtgtaaatttgtttctctca	8	5	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160129070	A	A	160129070	1	1	1	0	1	0	0	0	0	0	0	0	1135	1479	51	5		5	ATP1A4	1	160129070	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	1504541	160129070	89121551	31	31											
SLAMF7	57823	broad.mit.edu	37	chr1	160718358	160718358	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttggtgaggtggtgagctCcttgacatgagagatgttta	14	6	0	5			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160718358	A	A	160718358	1	1	1	0	1	0	0	0	0	0	0	0	14482	870	30	3		3	SLAMF7	1	160718358	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	589288	160718358	88532263	32	32											
LMX1A	4009	broad.mit.edu	37	chr1	165180080	165180080	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaggtagaacatctcctAtataatacttgaggaggcca	10	7	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165180080	G	G	165180080	1	3	1	0	1	0	0	0	0	0	0	0	8935	464	16	5		5	LMX1A	1	165180080	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	4461722	165180080	84070541	33	33											
RABGAP1L	9910	broad.mit.edu	37	chr1	174671252	174671252	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccactttgacttttaggAacagctaccggacctgcata	7	11	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174671252	T	T	174671252	3	4	1	1	0	0	0	0	1	0	0	0	13073	260	9	5	2089	5	RABGAP1L	1	174671252	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	9491172	174671252	74579369	34	34											
PAPPA2	60676	broad.mit.edu	37	chr1	176769067	176769067	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atagccccaatccactttatGggacacaattagaaactagc	6	11	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176769067	C	C	176769067	1	2	1	0	1	0	0	0	0	0	0	0	11527	1363	47	4		4	PAPPA2	1	176769067	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2097815	176769067	72481554	35	35											
C1orf49	84066	broad.mit.edu	37	chr1	178489437	178489437	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatgcagaatggtttgcaGagaggcaggaggaaggtatt	16	3	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178489437	A	A	178489437	1	1	1	0	1	0	0	0	0	0	0	0	2063	957	33	4		4	C1orf49	1	178489437	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1720370	178489437	70761184	36	36											
RGL1	23179	broad.mit.edu	37	chr1	183675640	183675640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgagatacgagtaggagGttttgactggctcaggaagg	16	4	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183675640	T	T	183675640	1	4	1	0	1	0	0	0	0	0	0	0	13384	1276	44	3		3	RGL1	1	183675640	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	5186203	183675640	65574981	37	37											
FAM5C	339479	broad.mit.edu	37	chr1	190203536	190203536	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattctcaggactctgaacCagaacagaactgacagaatc	7	10	2	5			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190203536	A	A	190203536	2	1	1	1	0	0	0	0	0	0	0	1	5645	581	21	2		2	FAM5C	1	190203536	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	6527896	190203536	59047085	38	38											
KCNT2	343450	broad.mit.edu	37	chr1	196398835	196398835	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgcagaaataaagggagtCaaagagattcagcttctttc	9	6	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196398835	A	A	196398835	3	1	1	1	0	0	0	0	1	0	0	0	8162	826	29	3	2796	3	KCNT2	1	196398835	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	6195299	196398835	52851786	39	39											
KIF21B	23046	broad.mit.edu	37	chr1	200957785	200957785	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaatcagaccagggctccTggtgggggttaggggtggtt	19	6	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200957785	A	A	200957785	1	1	1	0	1	0	0	0	0	0	0	0	8359	1595	55	5		5	KIF21B	1	200957785	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	4558950	200957785	48292836	40	40											
CACNA1S	779	broad.mit.edu	37	chr1	201028377	201028377	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagatgatagtgaaggcCacattgaggatgtctgagat	14	4	1	6			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201028377	A	A	201028377	2	1	1	1	0	0	0	0	0	0	0	1	2573	581	21	2		2	CACNA1S	1	201028377	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	70592	201028377	48222244	41	41											
PLXNA2	5362	broad.mit.edu	37	chr1	208213273	208213273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccatgcagccctgtggcCaggatctaagcagcagtgcc	11	15	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208213273	A	A	208213273	1	1	1	0	1	0	0	0	0	0	0	0	12215	609	21	2		2	PLXNA2	1	208213273	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	7184896	208213273	41037348	42	42											
IARS2	55699	broad.mit.edu	37	chr1	220267786	220267786	+	Frame_Shift_Del	DEL	G	-	-													agcttccccatgaagctgctGggccgccagcagccggacac							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220267786	-	-	220267786	7	5	1	1	0	1	0	1	0	0	0	0	7544	1335	47	0	230	0	IARS2	1	220267786	Frame_Shift_Del	DEL	G	TCGA-05-4244-01A-01D-1105-08	12054513	220267786	28982835	43	43											
PYCR2	29920	broad.mit.edu	37	chr1	226108231	226108231	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggggtcagtgtggagactGtgggggattccagcttcact	17	7	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226108231	A	A	226108231	3	1	1	1	0	0	0	0	1	0	0	0	12964	1377	48	4	79	4	PYCR2	1	226108231	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	5840445	226108231	23142390	44	44											
PRSS38	339501	broad.mit.edu	37	chr1	228004983	228004983	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccggcaaccacacccagTggtatgaggtgaacagggtg	15	10	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228004983	A	A	228004983	3	1	1	1	0	0	0	0	1	0	0	0	12733	1696	59	5	395	5	PRSS38	1	228004983	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	1896752	228004983	21245638	45	45											
ACTN2	88	broad.mit.edu	37	chr1	236908167	236908167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcctttcctgactaaacGcagagggaaccacgctggag	11	12	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236908167	A	A	236908167	1	1	1	0	1	0	0	0	0	0	0	0	205	1102	38	4		4	ACTN2	1	236908167	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	8903184	236908167	12342454	46	46											
CHRM3	1131	broad.mit.edu	37	chr1	240070932	240070932	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccaccgatgaccctctgGgaggtcataccgtctggcaa	11	13	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240070932	T	T	240070932	4	4	1	1	0	0	0	0	0	1	0	0	3409	1233	43	2	183	2	CHRM3	1	240070932	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3162765	240070932	9179689	47	47											
FMN2	56776	broad.mit.edu	37	chr1	240334612	240334612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattcaaaagagaaaaccaGcgtccatcctgtcgtgatgt	8	9	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240334612	T	T	240334612	1	4	1	0	1	0	0	0	0	0	0	0	6008	986	34	3		3	FMN2	1	240334612	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	263680	240334612	8916009	48	48											
AKT3	10000	broad.mit.edu	37	chr1	243788174	243788174	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcccagatggaaactaaCctctgtgttcttgaacatac	6	11	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243788174	T	T	243788174	1	4	1	0	1	0	0	0	0	0	0	0	481	522	18	4		4	AKT3	1	243788174	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	3453562	243788174	5462447	49	49											
CNST	163882	broad.mit.edu	37	chr1	246797932	246797932	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatgagttggagtagaatAttgaagaagcattatagcat	11	2	0	5			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246797932	T	T	246797932	1	4	1	0	1	0	0	0	0	0	0	0	3666	464	16	5		5	CNST	1	246797932	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	3009758	246797932	2452689	50	50											
OR2L2	26246	broad.mit.edu	37	chr1	248202145	248202145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcctgcacagacacttgGgtctatgagagcacagtgtt	11	10	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248202145	T	T	248202145	3	4	1	1	0	0	0	0	1	0	0	0	11101	1241	43	2	578	2	OR2L2	1	248202145	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1404213	248202145	1048476	51	51											
OR14C36	127066	broad.mit.edu	37	chr1	248512355	248512355	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcaccaccatttctaaggcGggatgtgtagctcaggtctt	11	10	3	0	rs146830794		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248512355	C	C	248512355	2	2	1	1	0	0	0	0	0	0	0	1	11040	1103	39	4		4	OR14C36	1	248512355	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	310210	248512355	738266	52	52											
GRHL1	29841	broad.mit.edu	37	chr2	10099004	10099004	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtaacattcagtgcctaaCagcataaagagtgcaggggg	13	7	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10099004	T	T	10099004	1	4	1	0	1	0	0	0	0	0	0	0	6829	493	17	4		4	GRHL1	2	10099004	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08		10099004	233100369	53	53											
TP53I3	9540	broad.mit.edu	37	chr2	24307210	24307234	+	Intron	DEL	ACAGGGCAGGGCAGGGCAGGACAGG	-	-													ctaacatattgtctgaggacAcagggcagggcagggcagga					rs72049316	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24307234	-	-	24307210	6	5	1	0	1	1	0	1	0	0	0	0	16511	174	6	0		0	TP53I3	2	24307210	Intron	DEL	ACAGGGCAGGGCAGGGCAGGACAGG	TCGA-05-4244-01A-01D-1105-08	14208206	24307210	218892163	54	54											
ITSN2	50618	broad.mit.edu	37	chr2	24428074	24428074	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgaatgaatcaaggcAgtatttaccatttggtttgc	9	7	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24428074	G	G	24428074	1	3	1	0	1	0	0	0	0	0	0	0	7997	203	7	5		5	ITSN2	2	24428074	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	120864	24428074	218771299	55	55											
TCF23	150921	broad.mit.edu	37	chr2	27375674	27375674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtggggtcccaagtccCtggagaggcagatgctctcc	15	11	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27375674	A	A	27375674	3	1	1	1	0	0	0	0	1	0	0	0	15814	681	24	2	594	2	TCF23	2	27375674	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2947600	27375674	215823699	56	56											
IFT172	26160	broad.mit.edu	37	chr2	27670357	27670357	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagcccttctgactgagtGttccttcgaccccctacatc	7	15	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27670357	A	A	27670357	1	1	1	0	1	0	0	0	0	0	0	0	7627	1392	48	4		4	IFT172	2	27670357	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	294683	27670357	215529016	57	57											
LCLAT1	253558	broad.mit.edu	37	chr2	30755914	30755914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcataagatttatttatagGgcatgataaaatttacctat	5	4	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30755914	T	T	30755914	1	4	1	0	1	0	0	0	0	0	0	0	8749	1247	43	2		2	LCLAT1	2	30755914	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	3085557	30755914	212443459	58	58											
LTBP1	4052	broad.mit.edu	37	chr2	33335901	33335901	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgtagacggctttaatGtgtcacagtaaataaaattc	8	6	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33335901	C	C	33335901	1	2	1	0	1	0	0	0	0	0	0	0	9160	1392	48	4		4	LTBP1	2	33335901	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2579987	33335901	209863472	59	59											
LHCGR	3973	broad.mit.edu	37	chr2	48950635	48950635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcccttgaaaagcatttcCtggtatggtggttatgtgta	10	7	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48950635	T	T	48950635	3	4	1	1	0	0	0	0	1	0	0	0	8834	690	24	4	1627	4	LHCGR	2	48950635	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	15614734	48950635	194248738	60	60											
RTN4	57142	broad.mit.edu	37	chr2	55200231	55200231	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcttccctgaccctcccCcgtataatcaaatgaatatc	4	15	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55200231	A	A	55200231	1	1	1	0	1	0	0	0	0	0	0	0	13839	638	22	2		2	RTN4	2	55200231	3'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	6249596	55200231	187999142	61	61											
FANCL	55120	broad.mit.edu	37	chr2	58468286	58468286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaacctcctagcccgtcaCagacttctccgcgcagctac	6	19	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58468286	A	A	58468286	1	1	1	0	1	0	0	0	0	0	0	0	5727	493	17	3		3	FANCL	2	58468286	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	3268055	58468286	184731087	62	62											
MEIS1	4211	broad.mit.edu	37	chr2	66798643	66798643	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgagtggacaagtcatGgacattcatgctcagtagct	10	8	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66798643	T	T	66798643	1	4	1	0	1	0	0	0	0	0	0	0	9560	1363	47	2		2	MEIS1	2	66798643	3'UTR	SNP	G	TCGA-05-4244-01A-01D-1105-08	8330357	66798643	176400730	63	63											
DYSF	8291	broad.mit.edu	37	chr2	71892550	71892550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacccacagcagcaggctGtgggtctctccagggcagca	12	13	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71892550	T	T	71892550	1	4	1	0	1	0	0	0	0	0	0	0	4899	1392	48	3		3	DYSF	2	71892550	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	5093907	71892550	171306823	64	64											
ACOXL	55289	broad.mit.edu	37	chr2	111691238	111691238	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgagccccaaggcctgcAgcccccgtgggtccccacga	13	17	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111691238	G	G	111691238	1	3	1	0	1	0	0	0	0	0	0	0	161	203	7	5		5	ACOXL	2	111691238	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	39798688	111691238	131508135	65	65											
ACTR3	10096	broad.mit.edu	37	chr2	114709124	114709124	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaattcagaattgtcctatTgatgtcagacgtcctctcta	7	9	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114709124	A	A	114709124	2	1	1	1	0	0	0	0	0	0	0	1	212	1800	63	5		5	ACTR3	2	114709124	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	3017886	114709124	128490249	66	66											
PCDP1	200373	broad.mit.edu	37	chr2	120383238	120383238	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtatactgagaaagattgGccaagcaaaacaatcgatag	10	6	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120383238	A	A	120383238	3	1	1	1	0	0	0	0	1	0	0	0	11666	1203	42	4	658	4	PCDP1	2	120383238	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	5674114	120383238	122816135	67	67											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530480	125530480	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaatggcactatgtccggGctgagaggaacctcaaggag	13	10	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125530480	C	C	125530480	3	2	1	1	0	0	0	0	1	0	0	0	3682	1203	42	4	2701	4	CNTNAP5	2	125530480	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	5147242	125530480	117668893	68	68											
FAM123C	205147	broad.mit.edu	37	chr2	131521154	131521154	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgacactgagctcgcCatcaccatgggcatcgtcag	11	13	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131521154	A	A	131521154	2	1	1	1	0	0	0	0	0	0	0	1	5470	581	21	2		2	FAM123C	2	131521154	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	5990674	131521154	111678219	69	69											
ARHGEF4	50649	broad.mit.edu	37	chr2	131797798	131797798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgggcggtgactggggaCccggtcgggggaggcctaac	21	11	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131797798	A	A	131797798	1	1	1	0	1	0	0	0	0	0	0	0	910	522	18	3		3	ARHGEF4	2	131797798	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	276644	131797798	111401575	70	70											
KYNU	8942	broad.mit.edu	37	chr2	143676236	143676236	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttcttgggaaattctctTggccttcaaccaaaaatggt	7	8	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143676236	G	G	143676236	2	3	1	1	0	0	0	0	0	0	0	1	8659	1799	63	5		5	KYNU	2	143676236	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	11878438	143676236	99523137	71	71											
NEB	4703	broad.mit.edu	37	chr2	152426724	152426724	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggaatttttagagtgcagGatggaaagcatgtccacagg	14	5	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152426724	T	T	152426724	2	4	1	1	0	0	0	0	0	0	0	1	10397	1164	41	3		3	NEB	2	152426724	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	8750488	152426724	90772649	72	72											
PRPF40A	55660	broad.mit.edu	37	chr2	153519649	153519649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttccgagcctcttcttttTctctttcacgttcacgggct	6	14	6	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153519649	A	A	153519649	3	1	1	1	0	0	0	0	1	0	0	0	12677	1783	62	5	694	5	PRPF40A	2	153519649	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	1092925	153519649	89679724	73	73											
IFIH1	64135	broad.mit.edu	37	chr2	163167477	163167477	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaattagaattaagtaagatCaaacatcttctgaataacct	4	6	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163167477	G	G	163167477	1	3	1	0	1	0	0	0	0	0	0	0	7590	841	29	4		4	IFIH1	2	163167477	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	9647828	163167477	80031896	74	74											
KCNH7	90134	broad.mit.edu	37	chr2	163241275	163241275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaaatcgagcccagatGctttccctattcctggagaa	7	12	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163241275	T	T	163241275	3	4	1	1	0	0	0	0	1	0	0	0	8107	1319	46	3	721	3	KCNH7	2	163241275	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	73798	163241275	79958098	75	75											
CSRNP3	80034	broad.mit.edu	37	chr2	166532856	166532856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtagaatcagaagaagCcagcactcttacactggatg	9	10	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166532856	A	A	166532856	3	1	1	1	0	0	0	0	1	0	0	0	3999	739	26	3	453	3	CSRNP3	2	166532856	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	3291581	166532856	76666517	76	76											
SCN9A	6335	broad.mit.edu	37	chr2	167133845	167133845	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attttgccaacttgaagactCggagctaaaagcaaatataa	7	7	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167133845	G	G	167133845	3	3	1	1	0	0	0	0	1	0	0	0	14038	884	31	4	3492	4	SCN9A	2	167133845	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	600989	167133845	76065528	77	77											
SCN9A	6335	broad.mit.edu	37	chr2	167144879	167144879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaggccaagcatatacCgcagagcctctgttgtaacc	11	11	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167144879	T	T	167144879	1	4	1	0	1	0	0	0	0	0	0	0	14038	667	23	4		4	SCN9A	2	167144879	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	11034	167144879	76054494	78	78											
SSFA2	6744	broad.mit.edu	37	chr2	182760624	182760624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatctacttgcattccttGtgtgtttttggaggagagtt	11	5	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182760624	T	T	182760624	1	4	1	0	1	0	0	0	0	0	0	0	15301	1392	48	3		3	SSFA2	2	182760624	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	15615745	182760624	60438749	79	79											
COL3A1	1281	broad.mit.edu	37	chr2	189871100	189871100	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaaatggctctcctggTgcccctggcgctcctggtca	13	13	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189871100	A	A	189871100	2	1	1	1	0	0	0	0	0	0	0	1	3720	1683	59	5		5	COL3A1	2	189871100	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	7110476	189871100	53328273	80	80											
DNAH7	56171	broad.mit.edu	37	chr2	196671525	196671525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcatttgctttatcttccCattcttcagggaaaacctca	4	12	5	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196671525	A	A	196671525	3	1	1	1	0	0	0	0	1	0	0	0	4646	595	21	2	2007	2	DNAH7	2	196671525	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	6800425	196671525	46527848	81	81											
ICOS	29851	broad.mit.edu	37	chr2	204824219	204824219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacgtgtgtgtttgtgtGtatgaaaggcaatggagagg	17	3	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204824219	T	T	204824219	1	4	1	0	1	0	0	0	0	0	0	0	7556	1392	48	3		3	ICOS	2	204824219	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	8152694	204824219	38375154	82	82											
TTLL4	9654	broad.mit.edu	37	chr2	219603497	219603497	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtctagtttcctgaacccCagcttccagtggaatgtcct	8	13	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219603497	T	T	219603497	2	4	1	1	0	0	0	0	0	0	0	1	16855	581	21	4		4	TTLL4	2	219603497	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	14779278	219603497	23595876	83	83											
SPEG	10290	broad.mit.edu	37	chr2	220338412	220338412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggccggaatgccctgggGcaagatctgggtgacctccc	14	14	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220338412	T	T	220338412	1	4	1	0	1	0	0	0	0	0	0	0	15154	1218	42	3		3	SPEG	2	220338412	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	734915	220338412	22860961	84	84											
WDR69	164781	broad.mit.edu	37	chr2	228786284	228786284	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagtcattacaggtatggAagacatcaacaccatagact	7	9	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228786284	C	C	228786284	1	2	1	0	1	0	0	0	0	0	0	0	17446	261	9	5		5	WDR69	2	228786284	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	8447872	228786284	14413089	85	85											
ECEL1	9427	broad.mit.edu	37	chr2	233347810	233347810	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcaggcagggtcagggCccacctcatactccttgtcc	12	15	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233347810	T	T	233347810	1	4	1	0	1	0	0	0	0	0	0	0	4931	754	26	4		4	ECEL1	2	233347810	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	4561526	233347810	9851563	86	86											
PPP1R7	5510	broad.mit.edu	37	chr2	242098539	242098539	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacatgtccttctaccagaaAggcctttcttgtgtcctcca	7	13	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242098539	T	T	242098539	1	4	1	0	1	0	0	0	0	0	0	0	12477	87	3	5		5	PPP1R7	2	242098539	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	8750729	242098539	1100834	87	87											
CNTN6	27255	broad.mit.edu	37	chr3	1414443	1414443	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagttgttttatgtttcgtAtttatccagctgtaacaata	7	5	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1414443	G	G	1414443	1	3	1	0	1	0	0	0	0	0	0	0	3677	464	16	5		5	CNTN6	3	1414443	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08		1414443	196607987	88	88											
SUMF1	285362	broad.mit.edu	37	chr3	4025386	4025386	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagtactagaagacattTcttttcttgttgggttaaca	7	5	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4025386	C	C	4025386	1	2	1	0	1	0	0	0	0	0	0	0	15503	1798	62	5		5	SUMF1	3	4025386	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	2610943	4025386	193997044	89	89											
ITPR1	3708	broad.mit.edu	37	chr3	4735185	4735185	+	Frame_Shift_Del	DEL	G	-	-													tttatgtagctggtcaattcGggagaggatgtcctcgtgtt							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4735185	-	-	4735185	7	5	1	1	0	1	0	1	0	0	0	0	7990	1103	39	0	4163	0	ITPR1	3	4735185	Frame_Shift_Del	DEL	G	TCGA-05-4244-01A-01D-1105-08	709799	4735185	193287245	90	90											
KAT2B	8850	broad.mit.edu	37	chr3	20164279	20164279	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccatcacggaccctgcaGcaatgcttggaccagaggtc	10	14	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20164279	A	A	20164279	3	1	1	1	0	0	0	0	1	0	0	0	8052	971	34	4	1430	4	KAT2B	3	20164279	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	15429094	20164279	177858151	91	91											
RPL15	6138	broad.mit.edu	37	chr3	23960893	23960893	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaggccgaaagagccgTggccttggaaagggccacaa	14	11	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23960893	A	A	23960893	2	1	1	1	0	0	0	0	0	0	0	1	13673	1683	59	5		5	RPL15	3	23960893	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	3796614	23960893	174061537	92	92											
EOMES	8320	broad.mit.edu	37	chr3	27759217	27759217	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaggattgaacgccgtaccGacctccagggacaatctgat	11	11	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27759217	A	A	27759217	3	1	1	1	0	0	0	0	1	0	0	0	5189	1057	37	4	659	4	EOMES	3	27759217	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3798324	27759217	170263213	93	93											
GADL1	339896	broad.mit.edu	37	chr3	30885981	30885981	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaattcaaagggacagtgggGaagggggagacatgaaaaca	16	4	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30885981	T	T	30885981	1	4	1	0	1	0	0	0	0	0	0	0	6245	1189	41	3		3	GADL1	3	30885981	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	3126764	30885981	167136449	94	94											
ZNF860	344787	broad.mit.edu	37	chr3	32031881	32031881	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtggcaaattttttagacGtcgttcatatctcgtagttc	8	7	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32031881	A	A	32031881	3	1	1	1	0	0	0	0	1	0	0	0	18323	1145	40	4	1312	4	ZNF860	3	32031881	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1145900	32031881	165990549	95	95											
TRIM71	131405	broad.mit.edu	37	chr3	32933097	32933097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcgcccacaaggggtaGctgtggaccaggaagggcgc	16	12	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32933097	T	T	32933097	3	4	1	1	0	0	0	0	1	0	0	0	16669	971	34	3	2415	3	TRIM71	3	32933097	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	901216	32933097	165089333	96	96											
FBXL2	25827	broad.mit.edu	37	chr3	33420148	33420148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaagttctggtgtagaagCcacactgacacagcatgttt	9	8	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33420148	A	A	33420148	1	1	1	0	1	0	0	0	0	0	0	0	5773	754	26	3		3	FBXL2	3	33420148	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	487051	33420148	164602282	97	97											
ATRIP	84126	broad.mit.edu	37	chr3	48488523	48488523	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcctcgcggccttttgctCggagggagttgtcaaccgcg	14	13	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48488523	A	A	48488523	1	1	1	0	1	0	0	0	0	0	0	0	1209	899	31	3		3	ATRIP	3	48488523	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	15068375	48488523	149533907	98	98											
QRICH1	54870	broad.mit.edu	37	chr3	49069463	49069463	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctttggaaagccagagcaaGgctgcttctaaatttagctt	9	9	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49069463	C	C	49069463	1	2	1	0	1	0	0	0	0	0	0	0	12987	1015	35	4		4	QRICH1	3	49069463	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	580940	49069463	148952967	99	99											
DOCK3	1795	broad.mit.edu	37	chr3	50757036	50757036	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaaagaccacatgcttGccatccaaccactgaggtct	7	14	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50757036	A	A	50757036	1	1	1	0	1	0	0	0	0	0	0	0	4728	1334	46	4		4	DOCK3	3	50757036	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1687573	50757036	147265394	100	100											
ITIH4	3700	broad.mit.edu	37	chr3	52858333	52858333	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcattgatgttggtcccTgaggaacacgcactctcaag	10	11	2	2	rs113532241		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52858333	G	G	52858333	5	3	1	1	0	0	0	0	0	0	1	0	7976	1594	55	5	1812	5	ITIH4	3	52858333	Splice_Site	SNP	T	TCGA-05-4244-01A-01D-1105-08	2101297	52858333	145164097	101	101											
CACNA1D	776	broad.mit.edu	37	chr3	53781537	53781537	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccagggctgagccctcCctcctggagtcagtcccatt	11	16	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53781537	T	T	53781537	1	4	1	0	1	0	0	0	0	0	0	0	2567	638	22	4		4	CACNA1D	3	53781537	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	923204	53781537	144240893	102	102											
DNASE1L3	1776	broad.mit.edu	37	chr3	58196650	58196650	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcctggcgctgctctggCttcaagactctgtgagaaga	11	11	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58196650	T	T	58196650	1	4	1	0	1	0	0	0	0	0	0	0	4703	812	28	4		4	DNASE1L3	3	58196650	5'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	4415113	58196650	139825780	103	103											
ROBO2	6092	broad.mit.edu	37	chr3	77651390	77651390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caccagttccaggccaagggGataaaacagcaacgatgctc	10	12	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77651390	T	T	77651390	3	4	1	1	0	0	0	0	1	0	0	0	13625	1174	41	3	2964	3	ROBO2	3	77651390	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	19454740	77651390	120371040	104	104											
CD96	10225	broad.mit.edu	37	chr3	111342568	111342568	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatacgaatgtaaatacaTataataatttgggaatttta	5	3	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111342568	C	C	111342568	1	2	1	0	1	0	0	0	0	0	0	0	3078	1421	49	5		5	CD96	3	111342568	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	33691178	111342568	86679862	105	105											
C3orf30	152405	broad.mit.edu	37	chr3	118865094	118865094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacatgaaagcccagccGctccctcaagtgctggccac	9	15	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118865094	T	T	118865094	3	4	1	1	0	0	0	0	1	0	0	0	2242	1087	38	3	60	3	C3orf30	3	118865094	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	7522526	118865094	79157336	106	106											
GPR156	165829	broad.mit.edu	37	chr3	119886829	119886829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacttggtctcctctttctgGacccaggctttgctcagtcc	9	14	4	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119886829	T	T	119886829	3	4	1	1	0	0	0	0	1	0	0	0	6726	1174	41	3	953	3	GPR156	3	119886829	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1021735	119886829	78135601	107	107											
POLQ	10721	broad.mit.edu	37	chr3	121213344	121213344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaggggacgtccccacCaagagaccacctgtccttcg	12	15	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121213344	A	A	121213344	1	1	1	0	1	0	0	0	0	0	0	0	12303	609	21	2		2	POLQ	3	121213344	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1326515	121213344	76809086	108	108											
PRR23B	389151	broad.mit.edu	37	chr3	138738935	138738935	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctgggatggggccctccCggtaggggatgaacatactt	15	9	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138738935	T	T	138738935	3	4	1	1	0	0	0	0	1	0	0	0	12701	652	23	4	232	4	PRR23B	3	138738935	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	17525591	138738935	59283495	109	109											
ZIC4	84107	broad.mit.edu	37	chr3	147114235	147114235	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcggcggtgagctgggggCcatggtgtccagagctgcta	19	9	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147114235	T	T	147114235	3	4	1	1	0	0	0	0	1	0	0	0	17807	739	26	4	924	4	ZIC4	3	147114235	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	8375300	147114235	50908195	110	110											
BCHE	590	broad.mit.edu	37	chr3	165547581	165547581	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacatcacccaaggcctcaCggtagttttcaggtctctga	8	13	4	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165547581	G	G	165547581	3	3	1	1	0	0	0	0	1	0	0	0	1363	536	19	4	579	4	BCHE	3	165547581	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	18433346	165547581	32474849	111	111											
NLGN1	22871	broad.mit.edu	37	chr3	173993351	173993351	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaaattttgacaattttGgtgtctgcatgccaccacca	7	10	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173993351	A	A	173993351	1	1	1	0	1	0	0	0	0	0	0	0	10556	1363	47	4		4	NLGN1	3	173993351	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	8445770	173993351	24029079	112	112											
IL1RAP	3556	broad.mit.edu	37	chr3	190347361	190347361	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaggacaaaaggagagaTtgagaacaagagagctccag	12	5	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190347361	C	C	190347361	1	2	1	0	1	0	0	0	0	0	0	0	7730	1508	52	5		5	IL1RAP	3	190347361	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	16354010	190347361	7675069	113	113											
TFRC	7037	broad.mit.edu	37	chr3	195798322	195798322	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccaggattctccaccaggTaaacaagtctaccgttctta	6	14	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	195798322	G	G	195798322	3	3	1	1	0	0	0	0	1	0	0	0	15935	1638	57	5	1706	5	TFRC	3	195798322	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	5450961	195798322	2224108	114	114											
FYTTD1	84248	broad.mit.edu	37	chr3	197500909	197500909	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatagcgcaggcacctccGctgcactcatgtacacgcac	9	15	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197500909	A	A	197500909	1	1	1	0	1	0	0	0	0	0	0	0	6187	1102	38	4		4	FYTTD1	3	197500909	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1702587	197500909	521521	115	115											
ACOX3	8310	broad.mit.edu	37	chr4	8407759	8407759	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcatgggaagaagggtcttCgggtcccggatctatacaaa	14	8	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8407759	A	A	8407759	2	1	1	1	0	0	0	0	0	0	0	1	160	871	31	3		3	ACOX3	4	8407759	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08		8407759	182746517	116	116											
NKX3-2	579	broad.mit.edu	37	chr4	13544075	13544075	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgctgccgcccccgccgcCggccccgctgcacagcgcgg	13	24	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13544075	G	G	13544075	3	3	1	1	0	0	0	0	1	0	0	0	10551	652	23	4	461	4	NKX3-2	4	13544075	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	5136316	13544075	177610201	117	117											
GABRA2	2555	broad.mit.edu	37	chr4	46314442	46314442	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttaatacttgacagctaGattggctggttgtttaatac	9	5	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46314442	A	A	46314442	1	1	1	0	1	0	0	0	0	0	0	0	6221	957	33	4		4	GABRA2	4	46314442	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	32770367	46314442	144839834	118	118											
CWH43	80157	broad.mit.edu	37	chr4	48993903	48993903	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattcatgatggacataGtacattgagtccacataaaa	7	6	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48993903	A	A	48993903	1	1	1	0	1	0	0	0	0	0	0	0	4106	1044	36	4		4	CWH43	4	48993903	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2679461	48993903	142160373	119	119											
PDGFRA	5156	broad.mit.edu	37	chr4	55129754	55129754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacctaatatcaataatgcCagtgggatagtttttctgga	8	6	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55129754	A	A	55129754	1	1	1	0	1	0	0	0	0	0	0	0	11755	609	21	2		2	PDGFRA	4	55129754	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	6135851	55129754	136024522	120	120											
KIAA1211	57482	broad.mit.edu	37	chr4	57181002	57181002	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgaaggacaaagagaacactCcgaggagccaggtatttgcg	13	9	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57181002	G	G	57181002	3	3	1	1	0	0	0	0	1	0	0	0	8285	855	30	4	1352	4	KIAA1211	4	57181002	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2051248	57181002	133973274	121	121											
KIAA1211	57482	broad.mit.edu	37	chr4	57187351	57187351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagttgtggaggataaaCggttttattcttcttctccc	10	8	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57187351	A	A	57187351	1	1	1	0	1	0	0	0	0	0	0	0	8285	551	19	3		3	KIAA1211	4	57187351	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	6349	57187351	133966925	122	122											
LPHN3	23284	broad.mit.edu	37	chr4	62598758	62598758	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaaagagcgcaccaggaaCatagtaaagtttgatttgcg	10	7	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62598758	G	G	62598758	3	3	1	1	0	0	0	0	1	0	0	0	9004	477	17	4	699	4	LPHN3	4	62598758	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	5411407	62598758	128555518	123	123											
TECRL	253017	broad.mit.edu	37	chr4	65146829	65146829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattaaaacttaaattagCacatacataaatggaatcta	3	5	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65146829	A	A	65146829	1	1	1	0	1	0	0	0	0	0	0	0	15868	725	25	3		3	TECRL	4	65146829	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2548071	65146829	126007447	124	124											
UGT2B4	7363	broad.mit.edu	37	chr4	70361226	70361226	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctaagtatgtcattaaaTgtccacatgatttcttgtac	5	7	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70361226	A	A	70361226	2	1	1	1	0	0	0	0	0	0	0	1	17087	1451	51	5		5	UGT2B4	4	70361226	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	5214397	70361226	120793050	125	125											
ADAMTS3	9508	broad.mit.edu	37	chr4	73164047	73164047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaaagcccactcaaaaGtatctaattcttcctggatg	5	11	5	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73164047	T	T	73164047	3	4	1	1	0	0	0	0	1	0	0	0	267	1029	36	3	1100	3	ADAMTS3	4	73164047	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	2802821	73164047	117990229	126	126											
PPEF2	5470	broad.mit.edu	37	chr4	76793378	76793378	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgaagaaaccttcaccctCaatcctatgtggcccaactc	5	15	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76793378	A	A	76793378	1	1	1	0	1	0	0	0	0	0	0	0	12404	841	29	3		3	PPEF2	4	76793378	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	3629331	76793378	114360898	127	127											
SDAD1	55153	broad.mit.edu	37	chr4	76892496	76892496	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactcctatctcattttccaGatacaagtcccaccttgagc	4	15	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76892496	C	C	76892496	1	2	1	0	1	0	0	0	0	0	0	0	14063	957	33	4		4	SDAD1	4	76892496	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	99118	76892496	114261780	128	128											
BMP3	651	broad.mit.edu	37	chr4	81967852	81967852	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctatttccattagtagaAagacacattgactaagttag	6	7	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81967852	C	C	81967852	1	2	1	0	1	0	0	0	0	0	0	0	1467	29	1	5		5	BMP3	4	81967852	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	5075356	81967852	109186424	129	129											
HERC5	51191	broad.mit.edu	37	chr4	89422058	89422058	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattatctgagttcatttgcGgttacaggtgcactgggaca	11	7	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89422058	A	A	89422058	1	1	1	0	1	0	0	0	0	0	0	0	7128	1131	39	4		4	HERC5	4	89422058	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	7454206	89422058	101732218	130	130											
COL25A1	84570	broad.mit.edu	37	chr4	109861882	109861882	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagcaccttaaatttgTattatctaattcacatttac	2	8	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109861882	A	A	109861882	1	1	1	0	1	0	0	0	0	0	0	0	3716	1653	57	5		5	COL25A1	4	109861882	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	20439824	109861882	81292394	131	131											
ANK2	287	broad.mit.edu	37	chr4	114275531	114275531	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccacctgtatcgccctcCgggaggacagaaaaacaccc	9	16	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114275531	A	A	114275531	2	1	1	1	0	0	0	0	0	0	0	1	621	639	23	1		1	ANK2	4	114275531	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	4413649	114275531	76878745	132	132											
PRSS12	8492	broad.mit.edu	37	chr4	119217009	119217009	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccacaaacagatgagagggActctgaagcagaaataggtc	12	8	1	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119217009	G	G	119217009	3	3	1	1	0	0	0	0	1	0	0	0	12721	275	10	5	803	5	PRSS12	4	119217009	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	4941478	119217009	71937267	133	133											
BBS7	55212	broad.mit.edu	37	chr4	122789195	122789195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagtcttctgagatgttaCtcccacctaaagaaaaacac	5	11	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122789195	A	A	122789195	3	1	1	1	0	0	0	0	1	0	0	0	1346	565	20	3	2181	3	BBS7	4	122789195	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	3572186	122789195	68365081	134	134											
TRPC3	7222	broad.mit.edu	37	chr4	122846200	122846200	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttcatacttaatggcaagTttgacacgacttaatgaagc	7	8	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122846200	A	A	122846200	3	1	1	1	0	0	0	0	1	0	0	0	16704	1722	60	5	1656	5	TRPC3	4	122846200	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	57005	122846200	68308076	135	135											
SCLT1	132320	broad.mit.edu	37	chr4	129925073	129925073	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgatagcctcaagtcattttCgtaacagtaattactgtttc	6	8	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129925073	T	T	129925073	1	4	1	0	1	0	0	0	0	0	0	0	14019	899	31	4		4	SCLT1	4	129925073	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	7078873	129925073	61229203	136	136											
PET112L	5188	broad.mit.edu	37	chr4	152624922	152624922	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctaaaaattgttcaggatCattatgttgaactttaaatg	6	4	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152624922	A	A	152624922	1	1	1	0	1	0	0	0	0	0	0	0	11828	841	29	3		3	PET112L	4	152624922	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	22699849	152624922	38529354	137	137											
FAM149A	25854	broad.mit.edu	37	chr4	187084174	187084174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggagcactgaagactgCaggggacatgagatcacgaa	13	9	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187084174	A	A	187084174	1	1	1	0	1	0	0	0	0	0	0	0	5501	725	25	3		3	FAM149A	4	187084174	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	34459252	187084174	4070102	138	138											
IRX4	50805	broad.mit.edu	37	chr5	1881900	1881900	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggccaggggcagggcaaGggctagggatgccccactta	18	10	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1881900	A	A	1881900	1	1	1	0	1	0	0	0	0	0	0	0	7916	1015	35	4		4	IRX4	5	1881900	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08		1881900	179033360	139	139											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239416	5239416	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttagagctgcctgcaagccTtgggcaaagaagattgtaac	11	8	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5239416	A	A	5239416	1	1	1	0	1	0	0	0	0	0	0	0	261	1624	56	5		5	ADAMTS16	5	5239416	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	3357516	5239416	175675844	140	140											
PRDM9	56979	broad.mit.edu	37	chr5	23527673	23527673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagacaccagaggacaCacacaggggagaagccctat	10	13	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23527673	A	A	23527673	3	1	1	1	0	0	0	0	1	0	0	0	12569	478	17	3	2514	3	PRDM9	5	23527673	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	18288257	23527673	157387587	141	141											
CDH10	1008	broad.mit.edu	37	chr5	24505406	24505406	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcattattaatagttTgcaggaaaaaatagtgaaat	9	3	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24505406	C	C	24505406	1	2	1	0	1	0	0	0	0	0	0	0	3126	1827	63	5		5	CDH10	5	24505406	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	977733	24505406	156409854	142	142											
MTMR12	54545	broad.mit.edu	37	chr5	32229773	32229773	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcccaggtttattctaaCggagtgccgggctaaggacc	13	10	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32229773	A	A	32229773	1	1	1	0	1	0	0	0	0	0	0	0	10035	551	19	3		3	MTMR12	5	32229773	3'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	7724367	32229773	148685487	143	143											
C6	729	broad.mit.edu	37	chr5	41160437	41160437	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgttttgtcactgcacagggGatgtttcttaccaagtccac	9	11	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41160437	T	T	41160437	2	4	1	1	0	0	0	0	0	0	0	1	2338	1164	41	3		3	C6	5	41160437	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	8930664	41160437	139754823	144	144											
MAP1B	4131	broad.mit.edu	37	chr5	71501080	71501080	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtaaaaaccaaggccagCcacaccacaggatctgaact	7	13	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71501080	A	A	71501080	1	1	1	0	1	0	0	0	0	0	0	0	9320	754	26	3		3	MAP1B	5	71501080	3'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	30340643	71501080	109414180	145	145											
BHMT	635	broad.mit.edu	37	chr5	78426859	78426859	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtgaccaaaggaacagccGagctgatgcagcagaaagaa	13	8	0	4	rs148233515		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78426859	T	T	78426859	4	4	1	1	0	0	0	0	0	1	0	0	1431	1059	37	3	1171	3	BHMT	5	78426859	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	6925779	78426859	102488401	146	146											
MSH3	4437	broad.mit.edu	37	chr5	80021292	80021292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgcaggatgacagaattcGagtcgaaaggatggataaca	13	5	0	2	rs144798521	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80021292	T	T	80021292	3	4	1	1	0	0	0	0	1	0	0	0	9965	1058	37	3	1395	3	MSH3	5	80021292	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1594433	80021292	100893968	147	147											
SSBP2	23635	broad.mit.edu	37	chr5	80738414	80738414	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatacaggacatggaatgCactcagagtttgaaagtctt	9	6	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80738414	T	T	80738414	1	4	1	0	1	0	0	0	0	0	0	0	15298	725	25	4		4	SSBP2	5	80738414	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	717122	80738414	100176846	148	148											
SSBP2	23635	broad.mit.edu	37	chr5	80769407	80769407	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcattcctttttatggctgCatagtattccatggtataca	7	9	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80769407	G	G	80769407	1	3	1	0	1	0	0	0	0	0	0	0	15298	725	25	4		4	SSBP2	5	80769407	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	30993	80769407	100145853	149	149											
POLR3G	10622	broad.mit.edu	37	chr5	89802489	89802489	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgatgaagaagagcaagaaGaggtaatggttcatttgggg	15	2	1	6			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89802489	C	C	89802489	3	2	1	1	0	0	0	0	1	0	0	0	12329	943	33	4	605	4	POLR3G	5	89802489	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	9033082	89802489	91112771	150	150											
TTC37	9652	broad.mit.edu	37	chr5	94839405	94839405	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgactcctagtcagatttTaataaacattgcaaccccca	5	12	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94839405	C	C	94839405	1	2	1	0	1	0	0	0	0	0	0	0	16831	1769	61	5		5	TTC37	5	94839405	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	5036916	94839405	86075855	151	151											
CEP120	153241	broad.mit.edu	37	chr5	122737584	122737584	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctcctagcccagagtctCcagctgccgcctaaggttgt	9	14	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122737584	A	A	122737584	1	1	1	0	1	0	0	0	0	0	0	0	3276	870	30	3		3	CEP120	5	122737584	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	27898179	122737584	58177676	152	152											
MEGF10	84466	broad.mit.edu	37	chr5	126784720	126784720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgccctggacttttcccCaggtccataacgctgtgctg	10	13	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126784720	A	A	126784720	1	1	1	0	1	0	0	0	0	0	0	0	9553	609	21	2		2	MEGF10	5	126784720	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	4047136	126784720	54130540	153	153											
SLC22A4	6583	broad.mit.edu	37	chr5	131647850	131647850	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcatgctgtcttccttgGcagtggaatctggtgtgtga	13	8	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131647850	A	A	131647850	1	1	1	0	1	0	0	0	0	0	0	0	14570	1218	42	4		4	SLC22A4	5	131647850	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	4863130	131647850	49267410	154	154											
PCDHB7	56129	broad.mit.edu	37	chr5	140554050	140554050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcgctgagcagcgaggCgctggtgcgcgtgctggtgc	18	14	0	1	rs148889209		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140554050	T	T	140554050	3	4	1	1	0	0	0	0	1	0	0	0	11641	768	27	4	1636	4	PCDHB7	5	140554050	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	8906200	140554050	40361210	155	155											
PCDHB9	56127	broad.mit.edu	37	chr5	140568110	140568110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacatcctaatgactgaaGgtgcactggacagagagagc	11	8	0	4	rs141971179		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140568110	T	T	140568110	3	4	1	1	0	0	0	0	1	0	0	0	11643	991	35	2	1220	2	PCDHB9	5	140568110	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	14060	140568110	40347150	156	156											
PCDHB11	56125	broad.mit.edu	37	chr5	140579492	140579492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttttgtaggcaatctgGcaaaggacctggggctgaag	16	6	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140579492	T	T	140579492	3	4	1	1	0	0	0	0	1	0	0	0	11630	1203	42	3	147	3	PCDHB11	5	140579492	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	11382	140579492	40335768	157	157											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744543	140744543	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctcctcctcacagctttaGatggcggagacccggtactc	9	15	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140744543	T	T	140744543	3	4	1	1	0	0	0	0	1	0	0	0	11651	942	33	3	648	3	PCDHGA5	5	140744543	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	165051	140744543	40170717	158	158											
ARHGEF37	389337	broad.mit.edu	37	chr5	148989214	148989214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggacacgtaccggaaggaGccggagctgcagcggcacat	16	11	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148989214	T	T	148989214	3	4	1	1	0	0	0	0	1	0	0	0	908	962	34	3	424	3	ARHGEF37	5	148989214	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	8244671	148989214	31926046	159	159											
TNIP1	10318	broad.mit.edu	37	chr5	150410427	150410427	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagggttactgggtgctaccAagtgccagggctaagtacct	13	9	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150410427	G	G	150410427	1	3	1	0	1	0	0	0	0	0	0	0	16437	145	5	5		5	TNIP1	5	150410427	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	1421213	150410427	30504833	160	160											
ANXA6	309	broad.mit.edu	37	chr5	150483150	150483150	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcaatggcttggtggagaGacttgtcatatttctcaatg	10	8	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150483150	A	A	150483150	3	1	1	1	0	0	0	0	1	0	0	0	722	942	33	4	86	4	ANXA6	5	150483150	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	72723	150483150	30432110	161	161											
EBF1	1879	broad.mit.edu	37	chr5	158422408	158422408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatcaatgctagggggacGctcatatgcttggcttagaa	12	8	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158422408	T	T	158422408	1	4	1	0	1	0	0	0	0	0	0	0	4920	1102	38	3		3	EBF1	5	158422408	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	7939258	158422408	22492852	162	162											
SLIT3	6586	broad.mit.edu	37	chr5	168176450	168176450	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttcccagggccttccccGcagaccttgacccacagcct	8	20	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168176450	A	A	168176450	1	1	1	0	1	0	0	0	0	0	0	0	14855	1102	38	4		4	SLIT3	5	168176450	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	9754042	168176450	12738810	163	163											
NKX2-5	1482	broad.mit.edu	37	chr5	172659670	172659670	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccccgacgccgaagttcaCgaagttgttgttggcggcgg	15	11	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172659670	T	T	172659670	3	4	1	1	0	0	0	0	1	0	0	0	10548	536	19	4	101	4	NKX2-5	5	172659670	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	4483220	172659670	8255590	164	164											
DRD1	1812	broad.mit.edu	37	chr5	174870043	174870043	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtgaggatacgaacagaGaagtccctctccaccaccag	10	13	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174870043	T	T	174870043	3	4	1	1	0	0	0	0	1	0	0	0	4796	933	33	3	1284	3	DRD1	5	174870043	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	2210373	174870043	6045217	165	165											
SFXN1	94081	broad.mit.edu	37	chr5	174936182	174936182	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatgaacatgaccatcacAggttgtatgatgacgtttta	8	9	1	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174936182	T	T	174936182	2	4	1	1	0	0	0	0	0	0	0	1	14307	175	7	5		5	SFXN1	5	174936182	Silent	SNP	A	TCGA-05-4244-01A-01D-1105-08	66139	174936182	5979078	166	166											
FAM153B	202134	broad.mit.edu	37	chr5	175525844	175525844	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaccaaaataaattttaAataatcttgcacaaaaacct	2	8	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175525844	C	C	175525844	1	2	1	0	1	0	0	0	0	0	0	0	5507	29	1	5		5	FAM153B	5	175525844	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	589662	175525844	5389416	167	167											
FGFR4	2264	broad.mit.edu	37	chr5	176517431	176517431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagcagcaagagcaggaGctgacagtagcccttgggca	15	10	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176517431	T	T	176517431	3	4	1	1	0	0	0	0	1	0	0	0	5925	962	34	3	138	3	FGFR4	5	176517431	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	991587	176517431	4397829	168	168											
GRM6	2916	broad.mit.edu	37	chr5	178410147	178410147	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccctctggcctgctcggggtCcaccgtccgctgttcctcat	10	18	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178410147	G	G	178410147	3	3	1	1	0	0	0	0	1	0	0	0	6867	855	30	4	441	4	GRM6	5	178410147	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1892716	178410147	2505113	169	169											
F13A1	2162	broad.mit.edu	37	chr6	6224937	6224937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtgttaaagacaccagCaaaaacccagcattggccat	7	11	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6224937	A	A	6224937	3	1	1	1	0	0	0	0	1	0	0	0	5383	710	25	3	1279	3	F13A1	6	6224937	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08		6224937	164890130	170	170											
BMP6	654	broad.mit.edu	37	chr6	7861542	7861542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtaccacgcctttcagggCtatggcaagtcactgtgctt	11	11	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7861542	T	T	7861542	1	4	1	0	1	0	0	0	0	0	0	0	1470	812	28	4		4	BMP6	6	7861542	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1636605	7861542	163253525	171	171											
LRRC16A	55604	broad.mit.edu	37	chr6	25610440	25610440	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggatttcttttctctggGttagctctccccaaggaggg	11	9	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25610440	A	A	25610440	1	1	1	0	1	0	0	0	0	0	0	0	9058	1276	44	4		4	LRRC16A	6	25610440	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	17748898	25610440	145504627	172	172											
GPX5	2880	broad.mit.edu	37	chr6	28499529	28499529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaacctctacctagacCaaaattgttcctcctctaac	5	14	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28499529	A	A	28499529	1	1	1	0	1	0	0	0	0	0	0	0	6809	609	21	2		2	GPX5	6	28499529	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2889089	28499529	142615538	173	173											
TRIM27	5987	broad.mit.edu	37	chr6	28876957	28876957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaatggcgccatctcggcCcaccgcaacctctgcctccc	8	20	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28876957	A	A	28876957	1	1	1	0	1	0	0	0	0	0	0	0	16625	638	22	2		2	TRIM27	6	28876957	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	377428	28876957	142238110	174	174											
OR2B3	442184	broad.mit.edu	37	chr6	29054376	29054376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgagctatgaagccatagGagatgaggatcaatgtcact	11	7	2	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29054376	T	T	29054376	3	4	1	1	0	0	0	0	1	0	0	0	11084	1174	41	3	295	3	OR2B3	6	29054376	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	177419	29054376	142060691	175	175											
CCHCR1	54535	broad.mit.edu	37	chr6	31112700	31112700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgggtcagctcctgcCgcagactggcagcctcctct	12	16	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31112700	A	A	31112700	3	1	1	1	0	0	0	0	1	0	0	0	2905	652	23	1	608	1	CCHCR1	6	31112700	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2058324	31112700	140002367	176	176											
BAT5	7920	broad.mit.edu	37	chr6	31669838	31669838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcagagtcccagatgccAgggtagacataccagtgcca	12	11	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31669838	G	G	31669838	1	3	1	0	1	0	0	0	0	0	0	0	1329	203	7	5		5	BAT5	6	31669838	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	557138	31669838	139445229	177	177											
TEAD3	7005	broad.mit.edu	37	chr6	35445092	35445092	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtgtggggaacttactgctGagcgtcggcggcaggggcgg	20	9	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35445092	T	T	35445092	2	4	1	1	0	0	0	0	0	0	0	1	15862	1277	45	3		3	TEAD3	6	35445092	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	3775254	35445092	135669975	178	178											
IL17A	3605	broad.mit.edu	37	chr6	52051373	52051374	+	Intron	DNP	GG	TT	TT													ccaggaatactgtatatgtaGgataggaaatgaaagctttg							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	52051374	TT	TT	52051373	1	4	1	0	1	0	0	0	0	0	0	0	7704	1015	35	2		2	IL17A	6	52051373	Intron	DNP	GG	TCGA-05-4244-01A-01D-1105-08	16606281	52051373	119063694	179	179											
IL17A	3605	broad.mit.edu	37	chr6	52054119	52054119	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagcccacactccccaaaGcagttagactatggagagcc	11	13	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52054119	A	A	52054119	1	1	1	0	1	0	0	0	0	0	0	0	7704	986	34	4		4	IL17A	6	52054119	3'UTR	SNP	G	TCGA-05-4244-01A-01D-1105-08	2746	52054119	119060948	180	180											
LRRC1	55227	broad.mit.edu	37	chr6	53764517	53764517	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggcaggtttaagtgtgCgtttatttttccatgtcatt	10	6	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53764517	T	T	53764517	1	4	1	0	1	0	0	0	0	0	0	0	9053	783	27	4		4	LRRC1	6	53764517	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1710398	53764517	117350550	181	181											
DST	667	broad.mit.edu	37	chr6	56358869	56358869	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcaagttatttatgtctTggtcaatatttgtctctgca	6	7	4	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56358869	A	A	56358869	3	1	1	1	0	0	0	0	1	0	0	0	4823	1812	63	5	3135	5	DST	6	56358869	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	2594352	56358869	114756198	182	182											
CGA	1081	broad.mit.edu	37	chr6	87795510	87795510	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacaagtactgcagtggcaCgccgtgtggttctccacttt	10	11	1	0	rs142673245		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87795510	T	T	87795510	2	4	1	1	0	0	0	0	0	0	0	1	3325	523	19	4		4	CGA	6	87795510	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	31436641	87795510	83319557	183	183											
UBE2J1	51465	broad.mit.edu	37	chr6	90039406	90039406	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaaaaccatattataactCaaagtcaaatatgtattcgt	3	8	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90039406	A	A	90039406	4	1	1	1	0	0	0	0	0	1	0	0	16986	835	29	3	11	3	UBE2J1	6	90039406	Nonsense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2243896	90039406	81075661	184	184											
GRIK2	2898	broad.mit.edu	37	chr6	102124642	102124642	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtttcatgtaatctttgAttgtagccatgaaatggcag	11	5	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102124642	T	T	102124642	3	4	1	1	0	0	0	0	1	0	0	0	6840	333	12	5	700	5	GRIK2	6	102124642	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	12085236	102124642	68990425	185	185											
RTN4IP1	84816	broad.mit.edu	37	chr6	107031108	107031108	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtgagcaggctacctcTgtagagtccctactaacgag	11	11	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107031108	A	A	107031108	1	1	1	0	1	0	0	0	0	0	0	0	13840	1595	55	5		5	RTN4IP1	6	107031108	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	4906466	107031108	64083959	186	186											
ARMC2	84071	broad.mit.edu	37	chr6	109233494	109233494	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctttaatatatttctctccAgctgttatactcagacattt	4	9	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109233494	T	T	109233494	1	4	1	0	1	0	0	0	0	0	0	0	955	203	7	5		5	ARMC2	6	109233494	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	2202386	109233494	61881573	187	187											
LAMA4	3910	broad.mit.edu	37	chr6	112452206	112452206	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctaatgacgaagtgggacAgcccatcattgtactgctta	10	9	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112452206	T	T	112452206	3	4	1	1	0	0	0	0	1	0	0	0	8680	188	7	5	1583	5	LAMA4	6	112452206	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	3218712	112452206	58662861	188	188											
SLC35F1	222553	broad.mit.edu	37	chr6	118596813	118596813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaaatatagatagtagaGggactgtcaagacttattct	9	5	2	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118596813	T	T	118596813	1	4	1	0	1	0	0	0	0	0	0	0	14702	1015	35	2		2	SLC35F1	6	118596813	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	6144607	118596813	52518254	189	189											
PLG	5340	broad.mit.edu	37	chr6	161152090	161152090	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggaatttccagtggcctgAcaatgaactactgcaggaat	10	8	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161152090	T	T	161152090	3	4	1	1	0	0	0	0	1	0	0	0	12181	275	10	5	1310	5	PLG	6	161152090	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	42555277	161152090	9962977	190	190											
BRP44L	51660	broad.mit.edu	37	chr6	166779514	166779514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctacttcatttgttgCgtggcatgcaaacagaagcc	11	10	1	1	rs139776186	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166779514	A	A	166779514	3	1	1	1	0	0	0	0	1	0	0	0	1528	768	27	3	84	3	BRP44L	6	166779514	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	5627424	166779514	4335553	191	191											
UNCX	340260	broad.mit.edu	37	chr7	1273142	1273142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagccgcgctgcgtcctGtgactgcccgcagactcggg	15	15	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1273142	T	T	1273142	1	4	1	0	1	0	0	0	0	0	0	0	17124	1392	48	3		3	UNCX	7	1273142	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08		1273142	157865521	192	192											
AMZ1	155185	broad.mit.edu	37	chr7	2748319	2748319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccccatgaggcctggagCttcaccttcagcaagttcct	8	15	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2748319	A	A	2748319	3	1	1	1	0	0	0	0	1	0	0	0	596	796	28	3	580	3	AMZ1	7	2748319	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1475177	2748319	156390344	193	193											
SDK1	221935	broad.mit.edu	37	chr7	4215261	4215261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaagcttgggcggtagcGgggtctttattgccccggga	17	8	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4215261	T	T	4215261	1	4	1	0	1	0	0	0	0	0	0	0	14081	1131	39	1		1	SDK1	7	4215261	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1466942	4215261	154923402	194	194											
ZDHHC4	55146	broad.mit.edu	37	chr7	6628084	6628084	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtactgggattattctgggCtgcttctcagtgctgtttat	11	7	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6628084	A	A	6628084	1	1	1	0	1	0	0	0	0	0	0	0	17743	812	28	3		3	ZDHHC4	7	6628084	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2412823	6628084	152510579	195	195											
TMEM195	392636	broad.mit.edu	37	chr7	15427303	15427303	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgattagagcaacagaaatGtgtaattgcattccatgctg	9	7	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15427303	A	A	15427303	1	1	1	0	1	0	0	0	0	0	0	0	16240	1392	48	4		4	TMEM195	7	15427303	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	8799219	15427303	143711360	196	196											
MEOX2	4223	broad.mit.edu	37	chr7	15651974	15651974	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaggcttgccatcacaacAtttctttcctgagaatggag	9	9	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15651974	T	T	15651974	1	4	1	0	1	0	0	0	0	0	0	0	9567	232	8	5		5	MEOX2	7	15651974	3'UTR	SNP	A	TCGA-05-4244-01A-01D-1105-08	224671	15651974	143486689	197	197											
BLVRA	644	broad.mit.edu	37	chr7	43806918	43806918	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagataaagtggcgctgaaCgcactgcagcctcctaagtt	10	12	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43806918	G	G	43806918	1	3	1	0	1	0	0	0	0	0	0	0	1457	551	19	4		4	BLVRA	7	43806918	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	28154944	43806918	115331745	198	198											
ZMIZ2	83637	broad.mit.edu	37	chr7	44798683	44798684	+	Intron	INS	-	AA	AA													gagtgagactgtctcaaattINSaaaaaaaaaaaaaaaaaaaa					rs71563954		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44798684	AA	AA	44798683	6	5	1	0	1	1	1	0	0	0	0	0	17823	1769	61	0		0	ZMIZ2	7	44798683	Intron	INS	-	TCGA-05-4244-01A-01D-1105-08	991765	44798683	114339980	199	199											
ABCA13	154664	broad.mit.edu	37	chr7	48443360	48443360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcctgaagaggaagctctCccttggcattgctttcatgg	12	10	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48443360	T	T	48443360	3	4	1	1	0	0	0	0	1	0	0	0	31	855	30	4	11937	4	ABCA13	7	48443360	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	3644677	48443360	110695303	200	200											
ZPBP	11055	broad.mit.edu	37	chr7	50070681	50070681	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttctaacaaattgtataGacttacctgaaaatgcaaag	5	7	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50070681	T	T	50070681	1	4	1	0	1	0	0	0	0	0	0	0	18348	957	33	3		3	ZPBP	7	50070681	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1627321	50070681	109067982	201	201											
ZNF735	730291	broad.mit.edu	37	chr7	63679663	63679663	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatctgagtctagtaagtgGagtaacttgtgatttttatg	10	3	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63679663	T	T	63679663	1	4	1	0	1	0	0	0	0	0	0	0	18253	1189	41	3		3	ZNF735	7	63679663	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	13608982	63679663	95459000	202	202											
CDK14	5218	broad.mit.edu	37	chr7	90708879	90708879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacgtttttcatggcattGttgattcatcctgctgtgta	8	8	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90708879	T	T	90708879	1	4	1	0	1	0	0	0	0	0	0	0	3160	1392	48	3		3	CDK14	7	90708879	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	27029216	90708879	68429784	203	203											
MCM7	4176	broad.mit.edu	37	chr7	99696705	99696706	+	Frame_Shift_Ins	INS	-	T	T													gtggccaccaccatcttgggINStttgacttcagagacacgag							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99696706	T	T	99696705	7	5	1	1	0	1	1	0	0	0	0	0	9485	1261	44	0	1680	0	MCM7	7	99696705	Frame_Shift_Ins	INS	-	TCGA-05-4244-01A-01D-1105-08	8987826	99696705	59441958	204	204											
RELN	5649	broad.mit.edu	37	chr7	103202196	103202196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaagacatttgtcacaCgttcaacaagccatatttat	6	8	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103202196	A	A	103202196	1	1	1	0	1	0	0	0	0	0	0	0	13328	551	19	3		3	RELN	7	103202196	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	3505491	103202196	55936467	205	205											
RINT1	60561	broad.mit.edu	37	chr7	105173187	105173187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaacctctcttgcctcCagtgggtgccctttgggagc	12	13	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105173187	A	A	105173187	1	1	1	0	1	0	0	0	0	0	0	0	13487	609	21	2		2	RINT1	7	105173187	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1970991	105173187	53965476	206	206											
CTTNBP2	83992	broad.mit.edu	37	chr7	117359591	117359591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcagacttgctggagcaCatgctctgaagttccttgac	10	11	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117359591	A	A	117359591	3	1	1	1	0	0	0	0	1	0	0	0	4079	478	17	3	392	3	CTTNBP2	7	117359591	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	12186404	117359591	41779072	207	207											
SPAM1	6677	broad.mit.edu	37	chr7	123599549	123599549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttacagaaatcttgcttGctcctagacaattacatgga	6	8	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123599549	T	T	123599549	3	4	1	1	0	0	0	0	1	0	0	0	15102	1310	46	3	1066	3	SPAM1	7	123599549	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	6239958	123599549	35539114	208	208											
CCDC136	64753	broad.mit.edu	37	chr7	128457972	128457972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggagggtgcaggttgcCctggcctctcctctttccct	13	13	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128457972	A	A	128457972	1	1	1	0	1	0	0	0	0	0	0	0	2796	638	22	2		2	CCDC136	7	128457972	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	4858423	128457972	30680691	209	209											
FAM40B	57464	broad.mit.edu	37	chr7	129099251	129099251	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtctagggtactgggggtAgatgttgttgaaagtagcat	16	3	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129099251	C	C	129099251	1	2	1	0	1	0	0	0	0	0	0	0	5612	435	15	5		5	FAM40B	7	129099251	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	641279	129099251	30039412	210	210											
AGK	55750	broad.mit.edu	37	chr7	141333840	141333840	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatcttattctgtccctgcCtttcaggttttaattcacag	5	10	4	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141333840	T	T	141333840	1	4	1	0	1	0	0	0	0	0	0	0	383	696	24	4		4	AGK	7	141333840	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	12234589	141333840	17804823	211	211											
KEL	3792	broad.mit.edu	37	chr7	142641549	142641549	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaccagaggaaatttctccCactcgttgccctgtcccagc	7	16	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142641549	T	T	142641549	1	4	1	0	1	0	0	0	0	0	0	0	8212	609	21	4		4	KEL	7	142641549	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1307709	142641549	16497114	212	212											
FAM131B	9715	broad.mit.edu	37	chr7	143053877	143053878	+	Frame_Shift_Ins	INS	-	C	C													ccggagcccagtcagtgtctINSccccccagcaaaggtggagg							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143053878	C	C	143053877	7	5	1	1	0	1	1	0	0	0	0	0	5486	1538	54	0	237	0	FAM131B	7	143053877	Frame_Shift_Ins	INS	-	TCGA-05-4244-01A-01D-1105-08	412328	143053877	16084786	213	213											
OR2A5	393046	broad.mit.edu	37	chr7	143748183	143748183	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccatcttgaggatccagtCtggggagggccgcagaaagg	17	9	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143748183	A	A	143748183	3	1	1	1	0	0	0	0	1	0	0	0	11075	913	32	3	691	3	OR2A5	7	143748183	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	694306	143748183	15390480	214	214											
OR2A14	135941	broad.mit.edu	37	chr7	143826247	143826247	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcacagacatcaccttgccGcgattccaggttggtccagc	9	14	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143826247	A	A	143826247	2	1	1	1	0	0	0	0	0	0	0	1	11070	1074	38	4		4	OR2A14	7	143826247	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	78064	143826247	15312416	215	215											
SSPO	23145	broad.mit.edu	37	chr7	149495277	149495277	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgttcttccagagccagGggccgttacatctcaggggt	12	12	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149495277	C	C	149495277	1	2	1	0	1	0	0	0	0	0	0	0	15307	1247	43	4		4	SSPO	7	149495277	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	5669030	149495277	9643386	216	216											
SSPO	23145	broad.mit.edu	37	chr7	149519646	149519646	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctggacgcgctgctcttGccgggtgctggtgcagcagc	16	13	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149519646	C	C	149519646	3	2	1	1	0	0	0	0	1	0	0	0	15307	1319	46	4	13492	4	SSPO	7	149519646	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	24369	149519646	9619017	217	217											
GIMAP8	155038	broad.mit.edu	37	chr7	150171185	150171185	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccttgtggggaaacgCggtgctggaaaaagtgcagc	15	9	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150171185	T	T	150171185	2	4	1	1	0	0	0	0	0	0	0	1	6449	755	27	4		4	GIMAP8	7	150171185	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	651539	150171185	8967478	218	218											
CNPY1	285888	broad.mit.edu	37	chr7	155299839	155299840	+	Intron	DNP	GG	TT	TT													aacataataacaacatatgtGgatagacgcacactggcggg							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	155299840	TT	TT	155299839	1	4	1	0	1	0	0	0	0	0	0	0	3659	1363	47	2		2	CNPY1	7	155299839	Intron	DNP	GG	TCGA-05-4244-01A-01D-1105-08	5128654	155299839	3838824	219	219											
CSMD1	64478	broad.mit.edu	37	chr8	2820770	2820770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggggatctctcctttcCacaccccgcgaccttcacag	8	17	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2820770	A	A	2820770	3	1	1	1	0	0	0	0	1	0	0	0	3978	595	21	2	1310	2	CSMD1	8	2820770	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08		2820770	143543252	220	220											
PIWIL2	55124	broad.mit.edu	37	chr8	22147484	22147484	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttttgaatgttctggaaAgaaagtttccattacaacca	6	8	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22147484	G	G	22147484	1	3	1	0	1	0	0	0	0	0	0	0	12053	87	3	5		5	PIWIL2	8	22147484	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	19326714	22147484	124216538	221	221											
WRN	7486	broad.mit.edu	37	chr8	30999265	30999265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaagctaatgaagaattGtgtccaaagaagttgcttct	8	7	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30999265	T	T	30999265	3	4	1	1	0	0	0	0	1	0	0	0	17529	1368	48	3	3305	3	WRN	8	30999265	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	8851781	30999265	115364757	222	222											
ANK1	286	broad.mit.edu	37	chr8	41526168	41526168	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctcattccttttagacaCtctccccacccagagctctg	5	16	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41526168	T	T	41526168	1	4	1	0	1	0	0	0	0	0	0	0	620	580	20	4		4	ANK1	8	41526168	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	10526903	41526168	104837854	223	223											
ANK1	286	broad.mit.edu	37	chr8	41563717	41563717	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcacatctgccactggaaCgtggccttcttgtgctacca	9	14	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41563717	T	T	41563717	3	4	1	1	0	0	0	0	1	0	0	0	620	536	19	4	4058	4	ANK1	8	41563717	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	37549	41563717	104800305	224	224											
RP1	6101	broad.mit.edu	37	chr8	55541741	55541741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctggcatgtgtggcaatGcagacaccacatcagtggac	11	11	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55541741	T	T	55541741	3	4	1	1	0	0	0	0	1	0	0	0	13643	1319	46	3	5309	3	RP1	8	55541741	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	13978024	55541741	90822281	225	225											
RP1	6101	broad.mit.edu	37	chr8	55542007	55542007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcatcatacagaggagaaGggtagtcatcagtcagaaag	11	6	5	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55542007	T	T	55542007	3	4	1	1	0	0	0	0	1	0	0	0	13643	991	35	2	5575	2	RP1	8	55542007	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	266	55542007	90822015	226	226											
XKR4	114786	broad.mit.edu	37	chr8	56362866	56362866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatagggagggccctcggcCagcatctcctcagcgcagaa	12	14	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56362866	A	A	56362866	1	1	1	0	1	0	0	0	0	0	0	0	17560	609	21	2		2	XKR4	8	56362866	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	820859	56362866	90001156	227	227											
C8orf46	254778	broad.mit.edu	37	chr8	67404639	67404639	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggaggcctctgtctctgGacccctagtctcgaggcatc	11	14	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67404639	T	T	67404639	1	4	1	0	1	0	0	0	0	0	0	0	2457	1189	41	3		3	C8orf46	8	67404639	5'Flank	SNP	G	TCGA-05-4244-01A-01D-1105-08	11041773	67404639	78959383	228	228											
PREX2	80243	broad.mit.edu	37	chr8	68956798	68956798	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatcaacacggaggtgatgGaagtggagaatgtggatgat	17	3	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68956798	A	A	68956798	3	1	1	1	0	0	0	0	1	0	0	0	12583	1175	41	4	946	4	PREX2	8	68956798	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1552159	68956798	77407224	229	229											
TRPA1	8989	broad.mit.edu	37	chr8	72938100	72938100	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccacaggcagagaagactCaaagtctataaaagggcccc	10	12	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72938100	A	A	72938100	1	1	1	0	1	0	0	0	0	0	0	0	16702	841	29	3		3	TRPA1	8	72938100	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	3981302	72938100	73425922	230	230											
ZFHX4	79776	broad.mit.edu	37	chr8	77763196	77763196	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtggaagtaaagaatgagGagcagaaaccgactaaagaa	12	4	0	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77763196	T	T	77763196	4	4	1	1	0	0	0	0	0	1	0	0	17761	1175	41	3	4073	3	ZFHX4	8	77763196	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	4825096	77763196	68600826	231	231											
RALYL	138046	broad.mit.edu	37	chr8	85776840	85776840	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttatcctaaggattaaatCtaagcttggaggtagaatag	9	4	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85776840	A	A	85776840	1	1	1	0	1	0	0	0	0	0	0	0	13128	928	32	3		3	RALYL	8	85776840	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	8013644	85776840	60587182	232	232											
CNGB3	54714	broad.mit.edu	37	chr8	87680187	87680187	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctatctgtgactttgagtCacagggtttcttggtgatag	12	6	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87680187	T	T	87680187	1	4	1	0	1	0	0	0	0	0	0	0	3633	841	29	4		4	CNGB3	8	87680187	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1903347	87680187	58683835	233	233											
TMEM55A	55529	broad.mit.edu	37	chr8	92033633	92033633	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatggaggtgggagctccgCtgaaaagatattagtcactg	13	6	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92033633	G	G	92033633	5	3	1	1	0	0	0	0	0	0	1	0	16304	811	28	4	691	4	TMEM55A	8	92033633	Splice_Site	SNP	C	TCGA-05-4244-01A-01D-1105-08	4353446	92033633	54330389	234	234											
RUNX1T1	862	broad.mit.edu	37	chr8	93088147	93088147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatagattgatttttctGgtacgtaagtaaattgcaaa	7	3	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93088147	T	T	93088147	1	4	1	0	1	0	0	0	0	0	0	0	13858	1363	47	2		2	RUNX1T1	8	93088147	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1054514	93088147	53275875	235	235											
MATN2	4147	broad.mit.edu	37	chr8	99016072	99016072	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccactcatgggggcgggcGggttcactagcaaccagtta	14	11	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99016072	A	A	99016072	1	1	1	0	1	0	0	0	0	0	0	0	9426	1131	39	4		4	MATN2	8	99016072	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	5927925	99016072	47347950	236	236											
KCNS2	3788	broad.mit.edu	37	chr8	99440446	99440446	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccctgagctcttcccctAcgtgctgcatttctatcaca	5	16	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99440446	G	G	99440446	3	3	1	1	0	0	0	0	1	0	0	0	8159	391	14	5	241	5	KCNS2	8	99440446	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	424374	99440446	46923576	237	237											
VPS13B	157680	broad.mit.edu	37	chr8	100733412	100733412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatctgtgtgtgtggtgtGtgtgtatccacacacatata	10	8	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100733412	T	T	100733412	1	4	1	0	1	0	0	0	0	0	0	0	17317	1392	48	3		3	VPS13B	8	100733412	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1292966	100733412	45630610	238	238											
PKHD1L1	93035	broad.mit.edu	37	chr8	110464253	110464254	+	Intron	INS	-	T	T													tggctgatagaatcaggtcaINSttttttttttgcaataatac					rs149400770	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110464254	T	T	110464253	6	5	1	0	1	1	1	0	0	0	0	0	12067	232	8	0		0	PKHD1L1	8	110464253	Intron	INS	-	TCGA-05-4244-01A-01D-1105-08	9730841	110464253	35899769	239	239											
MTBP	27085	broad.mit.edu	37	chr8	121458855	121458855	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaggaaatacttcttgactGtgtacaaggcactgagttac	9	8	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121458855	C	C	121458855	1	2	1	0	1	0	0	0	0	0	0	0	10006	1392	48	4		4	MTBP	8	121458855	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	10994602	121458855	24905167	240	240											
KLHL38	340359	broad.mit.edu	37	chr8	124664403	124664403	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagaacatctgtctcttgGcggtctccaagatgatctgg	11	9	4	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124664403	A	A	124664403	3	1	1	1	0	0	0	0	1	0	0	0	8461	1203	42	4	993	4	KLHL38	8	124664403	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3205548	124664403	21699619	241	241											
COL22A1	169044	broad.mit.edu	37	chr8	139662110	139662110	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtagccctggctgctatctCtccagatggagatttggttt	11	9	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139662110	T	T	139662110	1	4	1	0	1	0	0	0	0	0	0	0	3713	928	32	4		4	COL22A1	8	139662110	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	14997707	139662110	6701912	242	242											
TOP1MT	116447	broad.mit.edu	37	chr8	144444877	144444877	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcttgtgtgcatcacaatActtcagcgagacacaatcct	6	11	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144444877	G	G	144444877	1	3	1	0	1	0	0	0	0	0	0	0	16488	406	14	5		5	TOP1MT	8	144444877	5'Flank	SNP	A	TCGA-05-4244-01A-01D-1105-08	4782767	144444877	1919145	243	243											
SCRIB	23513	broad.mit.edu	37	chr8	144885746	144885746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgtggggctcacctgtGgggagacgtggtatgggaga	18	10	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144885746	T	T	144885746	1	4	1	0	1	0	0	0	0	0	0	0	14050	1363	47	2		2	SCRIB	8	144885746	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	440869	144885746	1478276	244	244											
PTPRD	5789	broad.mit.edu	37	chr9	8518211	8518211	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaatgttattgacagcaaCaaccctgaattcataatccg	5	12	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8518211	T	T	8518211	3	4	1	1	0	0	0	0	1	0	0	0	12907	478	17	4	4730	4	PTPRD	9	8518211	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08		8518211	132695220	245	245											
IFNA6	3443	broad.mit.edu	37	chr9	21350974	21350974	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaccttgctttatgtGtaggtcttaaatagggaaca	10	6	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21350974	T	T	21350974	1	4	1	0	1	0	0	0	0	0	0	0	7611	1392	48	3		3	IFNA6	9	21350974	5'Flank	SNP	G	TCGA-05-4244-01A-01D-1105-08	12832763	21350974	119862457	246	246											
FRMPD1	22844	broad.mit.edu	37	chr9	37692711	37692711	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaaatggtggcaagatggCttcggcgctcccgggacagc	14	11	0	1	rs142418624		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37692711	G	G	37692711	3	3	1	1	0	0	0	0	1	0	0	0	6117	797	28	4	75	4	FRMPD1	9	37692711	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	16341737	37692711	103520720	247	247											
VPS13A	23230	broad.mit.edu	37	chr9	79910762	79910762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaaatgcgactatacaGgtaagcttttcacaagtata	9	6	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79910762	T	T	79910762	3	4	1	1	0	0	0	0	1	0	0	0	17316	1014	35	2	3942	2	VPS13A	9	79910762	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	42218051	79910762	61302669	248	248											
FLJ46321	389763	broad.mit.edu	37	chr9	84607299	84607299	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaggaaagtttgtggggCttaccctctgtggttcaaaa	13	7	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84607299	T	T	84607299	2	4	1	1	0	0	0	0	0	0	0	1	5990	784	28	4		4	FLJ46321	9	84607299	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	4696537	84607299	56606132	249	249											
IARS	3376	broad.mit.edu	37	chr9	95015732	95015732	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaccacagtataaagcctaTaagctaaaagtaagacaagt	7	8	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95015732	A	A	95015732	3	1	1	1	0	0	0	0	1	0	0	0	7543	1406	49	5	1703	5	IARS	9	95015732	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	10408433	95015732	46197699	250	250											
GRIN3A	116443	broad.mit.edu	37	chr9	104385810	104385810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtttaggggacagaacCcgaacactaagggccgcaca	11	10	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104385810	A	A	104385810	1	1	1	0	1	0	0	0	0	0	0	0	6849	638	22	2		2	GRIN3A	9	104385810	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	9370078	104385810	36827621	251	251											
OR13D1	286365	broad.mit.edu	37	chr9	107457252	107457252	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatggtcctggatcataGgctgtctgacctccctattg	10	12	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107457252	A	A	107457252	3	1	1	1	0	0	0	0	1	0	0	0	11034	1000	35	4	552	4	OR13D1	9	107457252	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3071442	107457252	33756179	252	252											
PTPN3	5774	broad.mit.edu	37	chr9	112141905	112141905	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcgcttcacacacaaacttGtactggctctggaaaagaaa	7	10	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112141905	C	C	112141905	4	2	1	1	0	0	0	0	0	1	0	0	12897	1372	48	4	72	4	PTPN3	9	112141905	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	4684653	112141905	29071526	253	253											
KIAA0368	23392	broad.mit.edu	37	chr9	114176921	114176921	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgcaaggcacatgcgcaagTacagaacgatctacaaacag	10	11	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114176921	A	A	114176921	3	1	1	1	0	0	0	0	1	0	0	0	8241	1638	57	5	3872	5	KIAA0368	9	114176921	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	2035016	114176921	27036510	254	254											
OR1K1	392392	broad.mit.edu	37	chr9	125563312	125563312	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacagggggcactccgagCccttctcattgggcgaagga	14	11	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125563312	T	T	125563312	3	4	1	1	0	0	0	0	1	0	0	0	11056	739	26	4	913	4	OR1K1	9	125563312	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	11386391	125563312	15650119	255	255											
RC3H2	54542	broad.mit.edu	37	chr9	125613500	125613500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgataccaagctgtatgtcCaagatctcctaagaaaataa	6	9	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125613500	A	A	125613500	3	1	1	1	0	0	0	0	1	0	0	0	13275	593	21	2	343	2	RC3H2	9	125613500	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	50188	125613500	15599931	256	256											
SCAI	286205	broad.mit.edu	37	chr9	127905022	127905022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacatctcccggcgctacCgtgccagtcaagaactaaat	7	13	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127905022	A	A	127905022	1	1	1	0	1	0	0	0	0	0	0	0	13981	667	23	1		1	SCAI	9	127905022	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2291522	127905022	13308409	257	257											
FAM129B	64855	broad.mit.edu	37	chr9	130272356	130272356	+	Intron	DEL	C	-	-													ggctgcccggagtcacgcagCcggggccctctgggacagac							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130272356	-	-	130272356	6	5	1	0	1	1	0	1	0	0	0	0	5483	754	26	0		0	FAM129B	9	130272356	Intron	DEL	C	TCGA-05-4244-01A-01D-1105-08	2367334	130272356	10941075	258	258											
PPP2R4	5524	broad.mit.edu	37	chr9	131885508	131885508	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctctgtaatctcagcacCttgggaggccgaggcaggcg	13	13	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131885508	T	T	131885508	1	4	1	0	1	0	0	0	0	0	0	0	12492	696	24	4		4	PPP2R4	9	131885508	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1613152	131885508	9327923	259	259											
GPR107	57720	broad.mit.edu	37	chr9	132863626	132863626	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcttctgctagtggaggttGaagactgagattctctttct	11	7	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132863626	A	A	132863626	1	1	1	0	1	0	0	0	0	0	0	0	6688	1305	45	4		4	GPR107	9	132863626	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	978118	132863626	8349805	260	260											
DIP2C	22982	broad.mit.edu	37	chr10	532472	532472	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttttgtgtgatgtcaccTgcaagagaaggaaaatgaag	11	6	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	532472	A	A	532472	5	1	1	1	0	0	0	0	0	0	1	0	4569	1594	55	5	4730	5	DIP2C	10	532472	Splice_Site	SNP	T	TCGA-05-4244-01A-01D-1105-08		532472	135002275	261	261											
NEBL	10529	broad.mit.edu	37	chr10	21104601	21104606	+	In_Frame_Del	DEL	TTACAC	-	-													cactctttccatttcaggagTtacacttaaagtggtagctc							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21104606	-	-	21104601	7	5	1	1	0	1	0	1	0	0	0	0	10398	1725	60	0	878	0	NEBL	10	21104601	In_Frame_Del	DEL	TTACAC	TCGA-05-4244-01A-01D-1105-08	20572129	21104601	114430146	262	262											
FRMPD2	143162	broad.mit.edu	37	chr10	49450414	49450414	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggaggcagacagggccGgtgagaggagagagcagcca	20	8	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49450414	A	A	49450414	1	1	1	0	1	0	0	0	0	0	0	0	6118	1131	39	4		4	FRMPD2	10	49450414	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	28345813	49450414	86084333	263	263											
ERCC6	2074	broad.mit.edu	37	chr10	50667200	50667200	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaagcgaggggcccGgatgaagagtctgcatcttc	17	8	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50667200	A	A	50667200	2	1	1	1	0	0	0	0	0	0	0	1	5259	1103	39	4		4	ERCC6	10	50667200	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	1216786	50667200	84867547	264	264											
OGDHL	55753	broad.mit.edu	37	chr10	50946145	50946145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgagatgcatatggccaGggtggctgtctgctgcaccc	15	11	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50946145	T	T	50946145	1	4	1	0	1	0	0	0	0	0	0	0	10935	1015	35	2		2	OGDHL	10	50946145	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	278945	50946145	84588602	265	265											
BICC1	80114	broad.mit.edu	37	chr10	60475334	60475334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggggaagcgggacaatcgGgtggcctatatgcacccaat	14	9	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60475334	T	T	60475334	1	4	1	0	1	0	0	0	0	0	0	0	1433	1247	43	2		2	BICC1	10	60475334	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	9529189	60475334	75059413	266	266											
TYSND1	219743	broad.mit.edu	37	chr10	71905131	71905131	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattagggctggacccagatCtgagacctggaaagggatga	14	7	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71905131	T	T	71905131	1	4	1	0	1	0	0	0	0	0	0	0	16943	928	32	4		4	TYSND1	10	71905131	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	11429797	71905131	63629616	267	267											
DLG5	9231	broad.mit.edu	37	chr10	79584087	79584087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagcatggctatgtggagCcggggctctgcccatactcc	13	12	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79584087	A	A	79584087	1	1	1	0	1	0	0	0	0	0	0	0	4598	754	26	3		3	DLG5	10	79584087	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	7678956	79584087	55950660	268	268											
RPS24	6229	broad.mit.edu	37	chr10	79793825	79793825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggggctgttggcagggcGtccgggctggcgggctgcgc	21	12	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79793825	T	T	79793825	1	4	1	0	1	0	0	0	0	0	0	0	13746	1160	40	3		3	RPS24	10	79793825	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	209738	79793825	55740922	269	269											
HECTD2	143279	broad.mit.edu	37	chr10	93220277	93220277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaggccccagtccttcCagaacctattcttcctatcc	5	15	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93220277	A	A	93220277	3	1	1	1	0	0	0	0	1	0	0	0	7107	594	21	2	372	2	HECTD2	10	93220277	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	13426452	93220277	42314470	270	270											
MYOF	26509	broad.mit.edu	37	chr10	95121452	95121452	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttagagatccatttcactCagaaaaatctctaatcttta	3	9	5	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95121452	T	T	95121452	1	4	1	0	1	0	0	0	0	0	0	0	10183	841	29	4		4	MYOF	10	95121452	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1901175	95121452	40413295	271	271											
MYOF	26509	broad.mit.edu	37	chr10	95137204	95137204	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgaagaatttgaaaagAgaggaaataattgataattg	10	1	0	5			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95137204	C	C	95137204	1	2	1	0	1	0	0	0	0	0	0	0	10183	319	11	5		5	MYOF	10	95137204	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	15752	95137204	40397543	272	272											
TLL2	7093	broad.mit.edu	37	chr10	98188477	98188477	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttctcccagtgtctcatGgcctgcttaaaaatggccct	8	13	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98188477	T	T	98188477	2	4	1	1	0	0	0	0	0	0	0	1	16069	1335	47	2		2	TLL2	10	98188477	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	3051273	98188477	37346270	273	273											
CPN1	1369	broad.mit.edu	37	chr10	101814119	101814119	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctacctgaagtgacatcatGgttaatcccactgacagaaa	7	11	1	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101814119	C	C	101814119	3	2	1	1	0	0	0	0	1	0	0	0	3841	1348	47	4	292	4	CPN1	10	101814119	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3625642	101814119	33720628	274	274											
MKI67	4288	broad.mit.edu	37	chr10	129902901	129902901	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggagtttccacaaatgtGttgatatttttctcatcact	6	8	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129902901	A	A	129902901	2	1	1	1	0	0	0	0	0	0	0	1	9691	1368	48	4		4	MKI67	10	129902901	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	28088782	129902901	5631846	275	275											
CDHR5	53841	broad.mit.edu	37	chr11	617417	617417	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctccccgcgccctcgccCtcatcgccgctgccggagtc	9	24	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	617417	G	G	617417	3	3	1	1	0	0	0	0	1	0	0	0	3152	680	24	4	69	4	CDHR5	11	617417	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08		617417	134389099	276	276											
MRPL23	6150	broad.mit.edu	37	chr11	1977658	1977658	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcgggctgtgacggggtgGccagcagggacgcgccccag	19	12	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1977658	C	C	1977658	1	2	1	0	1	0	0	0	0	0	0	0	9883	1218	42	4		4	MRPL23	11	1977658	3'UTR	SNP	G	TCGA-05-4244-01A-01D-1105-08	1360241	1977658	133028858	277	277											
METT5D1	196074	broad.mit.edu	37	chr11	28308927	28308927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttttctagatctttgaGttgtacatcaaatctggggg	9	7	4	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28308927	T	T	28308927	1	4	1	0	1	0	0	0	0	0	0	0	9585	1044	36	3		3	METT5D1	11	28308927	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	26331269	28308927	106697589	278	278											
OR4S2	219431	broad.mit.edu	37	chr11	55419045	55419046	+	Missense_Mutation	DNP	CC	AA	AA													tacagcatcatcctagtttcCctgagaaagcagtcagcaga							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55419046	AA	AA	55419045	3	1	1	1	0	0	0	0	1	0	0	0	11177	610	22	2	668	2	OR4S2	11	55419045	Missense_Mutation	DNP	CC	TCGA-05-4244-01A-01D-1105-08	27110118	55419045	79587471	279	279											
OR10Q1	219960	broad.mit.edu	37	chr11	57995561	57995561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccgaggacgcaggtacaCgaggctgcagcagccatact	14	12	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57995561	A	A	57995561	3	1	1	1	0	0	0	0	1	0	0	0	11010	536	19	3	176	3	OR10Q1	11	57995561	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2576516	57995561	77010955	280	280											
VWCE	220001	broad.mit.edu	37	chr11	61049184	61049184	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgacggggaggggccaggcTatgggggggcgtagctgggg	25	6	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61049184	A	A	61049184	1	1	1	0	1	0	0	0	0	0	0	0	17372	1537	53	5		5	VWCE	11	61049184	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	3053623	61049184	73957332	281	281											
CYBASC3	220002	broad.mit.edu	37	chr11	61124041	61124059	+	Frame_Shift_Del	DEL	CTGGGTGCCAGTTGAACAT	-	-													catgccagcaaccataagcaCtgggtgccagttgaacatgt							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61124059	-	-	61124041	7	5	1	1	0	1	0	1	0	0	0	0	4165	565	20	0	603	0	CYBASC3	11	61124041	Frame_Shift_Del	DEL	CTGGGTGCCAGTTGAACAT	TCGA-05-4244-01A-01D-1105-08	74857	61124041	73882475	282	282											
RCOR2	283248	broad.mit.edu	37	chr11	63681311	63681311	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacattactcagagtcccaGaggatggggctcggcccctg	12	14	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63681311	C	C	63681311	1	2	1	0	1	0	0	0	0	0	0	0	13291	957	33	4		4	RCOR2	11	63681311	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2557270	63681311	71325205	283	283											
C11orf20	25858	broad.mit.edu	37	chr11	64070923	64070923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggcccaggagtctgcGgatgactaacccttttttct	12	10	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64070923	A	A	64070923	1	1	1	0	1	0	0	0	0	0	0	0	1645	1131	39	4		4	C11orf20	11	64070923	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	389612	64070923	70935593	284	284											
NAALADL1	10004	broad.mit.edu	37	chr11	64821756	64821756	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctccgtcaggccggaagcCgggacccaacctgtagtggc	14	14	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64821756	T	T	64821756	3	4	1	1	0	0	0	0	1	0	0	0	10223	652	23	4	1316	4	NAALADL1	11	64821756	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	750833	64821756	70184760	285	285											
DPF2	5977	broad.mit.edu	37	chr11	65107996	65107996	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caattgttacatctggatggAaaagcgacaccggggtccag	12	9	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65107996	T	T	65107996	3	4	1	1	0	0	0	0	1	0	0	0	4757	246	9	5	179	5	DPF2	11	65107996	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	286240	65107996	69898520	286	286											
UBTFL1	642623	broad.mit.edu	37	chr11	89819579	89819579	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatatattcaggatttccgGaaggaaaagcaagaatttga	9	4	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89819579	T	T	89819579	2	4	1	1	0	0	0	0	0	0	0	1	17036	1161	41	3		3	UBTFL1	11	89819579	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	24711583	89819579	45186937	287	287											
NAALAD2	10003	broad.mit.edu	37	chr11	89910923	89910923	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagccaccatgactggctggTtgttattttttctatagtta	9	7	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89910923	G	G	89910923	1	3	1	0	1	0	0	0	0	0	0	0	10222	1740	60	5		5	NAALAD2	11	89910923	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	91344	89910923	45095593	288	288											
FAT3	120114	broad.mit.edu	37	chr11	92495049	92495049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgacagatggtggtccctctCcaaaacagtcaaccatttgg	9	11	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92495049	A	A	92495049	3	1	1	1	0	0	0	0	1	0	0	0	5748	855	30	3	3711	3	FAT3	11	92495049	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2584126	92495049	42511467	289	289											
SESN3	143686	broad.mit.edu	37	chr11	94924520	94924520	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctattttggaagggagaaaGaataagtgaggaaggtgtta	14	2	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94924520	C	C	94924520	1	2	1	0	1	0	0	0	0	0	0	0	14239	957	33	4		4	SESN3	11	94924520	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2429471	94924520	40081996	290	290											
ATM	472	broad.mit.edu	37	chr11	108199895	108199895	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcatcggaatttgaaaacAagcaagctctcctgaaaaga	7	8	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108199895	C	C	108199895	3	2	1	1	0	0	0	0	1	0	0	0	1113	131	5	5	7427	5	ATM	11	108199895	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	13275375	108199895	26806621	291	291											
USP28	57646	broad.mit.edu	37	chr11	113700072	113700072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaaaagggttttcctagGcaaagagagagactttttaa	9	5	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113700072	T	T	113700072	1	4	1	0	1	0	0	0	0	0	0	0	17185	1218	42	3		3	USP28	11	113700072	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	5500177	113700072	21306444	292	292											
VWA5A	4013	broad.mit.edu	37	chr11	123995132	123995132	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaagaggaccaaatgatttCagaatttagttttagcagct	8	6	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123995132	G	G	123995132	1	3	1	0	1	0	0	0	0	0	0	0	17369	841	29	4		4	VWA5A	11	123995132	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	10295060	123995132	11011384	293	293											
LRTM2	654429	broad.mit.edu	37	chr12	1943779	1943779	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcctatggctgcatctaCgcctccctcatggccaagta	9	15	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1943779	T	T	1943779	2	4	1	1	0	0	0	0	0	0	0	1	9132	547	19	4		4	LRTM2	12	1943779	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08		1943779	131908116	294	294											
CACNA1C	775	broad.mit.edu	37	chr12	2800361	2800361	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggtctacgtcagcagccTgtagtgggcgctgccagatg	15	11	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2800361	C	C	2800361	3	2	1	1	0	0	0	0	1	0	0	0	2566	1580	55	5	7308	5	CACNA1C	12	2800361	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	856582	2800361	131051534	295	295											
PZP	5858	broad.mit.edu	37	chr12	9304936	9304936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggaaaaagaatttaggGttttatacgtgaaagaaagc	10	3	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9304936	T	T	9304936	1	4	1	0	1	0	0	0	0	0	0	0	12977	1276	44	3		3	PZP	12	9304936	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	6504575	9304936	124546959	296	296											
GRIN2B	2904	broad.mit.edu	37	chr12	13764833	13764833	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggttagaacagagagcaaaaGaattcgaattaattcacata	8	5	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13764833	T	T	13764833	1	4	1	0	1	0	0	0	0	0	0	0	6846	957	33	3		3	GRIN2B	12	13764833	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	4459897	13764833	120087062	297	297											
SLCO1B1	10599	broad.mit.edu	37	chr12	21391919	21391919	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctatttctacagaagggtCtacttgggcttgtcttcaat	8	9	5	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21391919	A	A	21391919	2	1	1	1	0	0	0	0	0	0	0	1	14837	900	32	3		3	SLCO1B1	12	21391919	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	7627086	21391919	112459976	298	298											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	1	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	4006366	25398285	108453610	299	299											
ADAMTS20	80070	broad.mit.edu	37	chr12	43860487	43860487	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaacatatttccgactacaGtttgaccagctccaaggact	7	11	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43860487	A	A	43860487	2	1	1	1	0	0	0	0	0	0	0	1	266	1020	36	4		4	ADAMTS20	12	43860487	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	18462202	43860487	89991408	300	300											
TMEM117	84216	broad.mit.edu	37	chr12	44403455	44403455	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgctttggttagggctcCgctggtttatacttgaagtc	11	9	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44403455	T	T	44403455	1	4	1	0	1	0	0	0	0	0	0	0	16154	667	23	4		4	TMEM117	12	44403455	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	542968	44403455	89448440	301	301											
TENC1	23371	broad.mit.edu	37	chr12	53452954	53452954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccccatgctctctgtcaGcagcgactcaggccattcct	7	18	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53452954	T	T	53452954	3	4	1	1	0	0	0	0	1	0	0	0	15880	971	34	3	1708	3	TENC1	12	53452954	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	9049499	53452954	80398941	302	302											
LACRT	90070	broad.mit.edu	37	chr12	55025579	55025579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattccttttcctgcttttgCaagggcttgttctgttagta	8	9	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55025579	A	A	55025579	3	1	1	1	0	0	0	0	1	0	0	0	8668	710	25	3	126	3	LACRT	12	55025579	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1572625	55025579	78826316	303	303											
KIF5A	3798	broad.mit.edu	37	chr12	57966319	57966319	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgggctgggcaagggAgcaggaggatggcaacagga	19	8	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57966319	T	T	57966319	1	4	1	0	1	0	0	0	0	0	0	0	8375	319	11	5		5	KIF5A	12	57966319	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	2940740	57966319	75885576	304	304											
GLIPR1	11010	broad.mit.edu	37	chr12	75884265	75884265	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctttgacgctctttccaAtggagcacattttatatgca	8	9	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75884265	G	G	75884265	3	3	1	1	0	0	0	0	1	0	0	0	6505	101	4	5	510	5	GLIPR1	12	75884265	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	17917946	75884265	57967630	305	305											
CLLU1OS	574016	broad.mit.edu	37	chr12	92818631	92818631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctcaaaacaacagaataCgatttagcaaattacttctt	3	8	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92818631	A	A	92818631	1	1	1	0	1	0	0	0	0	0	0	0	3573	528	19	3		3	CLLU1OS	12	92818631	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	16934366	92818631	41033264	306	306											
NT5DC3	51559	broad.mit.edu	37	chr12	104174051	104174051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaacagggtggtggacgCgcacattcaatacaggcctc	12	12	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104174051	A	A	104174051	1	1	1	0	1	0	0	0	0	0	0	0	10787	783	27	3		3	NT5DC3	12	104174051	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	11355420	104174051	29677844	307	307											
ACACB	32	broad.mit.edu	37	chr12	109644622	109644622	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaacctcaccaacgtcatGagtggcttttgtctgccaga	9	11	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109644622	T	T	109644622	3	4	1	1	0	0	0	0	1	0	0	0	107	1290	45	3	3095	3	ACACB	12	109644622	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	5470571	109644622	24207273	308	308											
ANAPC7	51434	broad.mit.edu	37	chr12	110825555	110825555	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctctcaccagatggtactGattgctcttgagttgtcacc	10	11	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110825555	A	A	110825555	2	1	1	1	0	0	0	0	0	0	0	1	606	1280	45	4		4	ANAPC7	12	110825555	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	1180933	110825555	23026340	309	309											
SDSL	113675	broad.mit.edu	37	chr12	113873352	113873352	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagctggtcacacttccagAcatcaccaggtgggtaaggg	12	11	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113873352	G	G	113873352	3	3	1	1	0	0	0	0	1	0	0	0	14089	275	10	5	680	5	SDSL	12	113873352	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	3047797	113873352	19978543	310	310											
RBM19	9904	broad.mit.edu	37	chr12	114404165	114404165	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgagaccttggcctgaCctgtccggaagtaggcgtgg	16	10	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114404165	A	A	114404165	1	1	1	0	1	0	0	0	0	0	0	0	13229	522	18	3		3	RBM19	12	114404165	5'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	530813	114404165	19447730	311	311											
PEBP1	5037	broad.mit.edu	37	chr12	118577338	118577338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccgattatgtgggctcgGggcctcccaagggcacaggt	14	12	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118577338	T	T	118577338	3	4	1	1	0	0	0	0	1	0	0	0	11807	1232	43	2	338	2	PEBP1	12	118577338	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	4173173	118577338	15274557	312	312											
WDR66	144406	broad.mit.edu	37	chr12	122405848	122405848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggaggtgacatgtgaacGtgccaggcctctctcgggcc	14	12	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122405848	T	T	122405848	1	4	1	0	1	0	0	0	0	0	0	0	17444	1160	40	3		3	WDR66	12	122405848	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	3828510	122405848	11446047	313	313											
TMEM132B	114795	broad.mit.edu	37	chr12	126004076	126004076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcagattacctggcagGtggagtacccgattgaggac	13	11	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126004076	T	T	126004076	3	4	1	1	0	0	0	0	1	0	0	0	16169	1261	44	3	1197	3	TMEM132B	12	126004076	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3598228	126004076	7847819	314	314											
EP400	57634	broad.mit.edu	37	chr12	132490798	132490798	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacattgcggacgtcactgCggtggctgaagccatcctgc	14	12	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132490798	T	T	132490798	3	4	1	1	0	0	0	0	1	0	0	0	5191	768	27	4	3124	4	EP400	12	132490798	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	6486722	132490798	1361097	315	315											
ZNF268	10795	broad.mit.edu	37	chr12	133727658	133727658	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggacttcaccagggaGgagtggaagctgctggacac	15	8	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133727658	T	T	133727658	1	4	1	1	0	0	0	0	0	0	0	0	17933	991	35	2		2	ZNF268	12	133727658	Translation_Start_Site	SNP	G	TCGA-05-4244-01A-01D-1105-08	1236860	133727658	124237	316	316											
TPTE2	93492	broad.mit.edu	37	chr13	19997123	19997123	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgaacatgtggcaggggTtggaaagaacataattcttt	11	5	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19997123	G	G	19997123	1	3	1	0	1	0	0	0	0	0	0	0	16555	1740	60	5		5	TPTE2	13	19997123	3'UTR	SNP	T	TCGA-05-4244-01A-01D-1105-08		19997123	95172755	317	317											
PABPC3	5042	broad.mit.edu	37	chr13	25670895	25670895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgaacttggagctaggGcaaaagagttccccaatgtt	11	8	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25670895	T	T	25670895	3	4	1	1	0	0	0	0	1	0	0	0	11459	1203	42	3	561	3	PABPC3	13	25670895	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	5673772	25670895	89498983	318	318											
FLT3	2322	broad.mit.edu	37	chr13	28592864	28592864	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgggctgtgccgtgagcgGccatgatgatgtgcaacaaa	14	9	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28592864	A	A	28592864	1	1	1	0	1	0	0	0	0	0	0	0	6000	1218	42	4		4	FLT3	13	28592864	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2921969	28592864	86577014	319	319											
NALCN	259232	broad.mit.edu	37	chr13	101735223	101735224	+	Missense_Mutation	DNP	CT	AA	AA													aaaggtacggtcaccgggtcCtcgacgtcccactgcaacag							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	101735224	AA	AA	101735223	3	1	1	1	0	0	0	0	1	0	0	0	10242	680	24	2	1562	2	NALCN	13	101735223	Missense_Mutation	DNP	CT	TCGA-05-4244-01A-01D-1105-08	73142359	101735223	13434655	320	320											
COL4A1	1282	broad.mit.edu	37	chr13	110866242	110866242	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcgggcaatcttacatcCacccacccccaatcccacag	5	18	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110866242	T	T	110866242	1	4	1	0	1	0	0	0	0	0	0	0	3721	609	21	4		4	COL4A1	13	110866242	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	9131019	110866242	4303636	321	321											
MYH7	4625	broad.mit.edu	37	chr14	23885394	23885394	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgagtccaccacccgcAggtggttgcgcttggcctgt	14	14	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23885394	T	T	23885394	3	4	1	1	0	0	0	0	1	0	0	0	10133	188	7	5	1063	5	MYH7	14	23885394	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08		23885394	83464146	322	322											
RPL10L	140801	broad.mit.edu	37	chr14	47120353	47120353	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gactgggaacgtacttgactCcacaaccatcagggatgagg	12	10	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47120353	G	G	47120353	3	3	1	1	0	0	0	0	1	0	0	0	13667	855	30	4	61	4	RPL10L	14	47120353	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	23234959	47120353	60229187	323	323											
TRIM9	114088	broad.mit.edu	37	chr14	51475811	51475811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacatacctttcacttgcacGaaatccagctggtggatgga	10	10	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51475811	T	T	51475811	3	4	1	1	0	0	0	0	1	0	0	0	16674	1049	37	3	913	3	TRIM9	14	51475811	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	4355458	51475811	55873729	324	324											
NID2	22795	broad.mit.edu	37	chr14	52481179	52481179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacggtgggtatacctgtGggagagagggtgggagagca	21	5	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52481179	T	T	52481179	1	4	1	0	1	0	0	0	0	0	0	0	10510	1363	47	2		2	NID2	14	52481179	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1005368	52481179	54868361	325	325											
C14orf149	112849	broad.mit.edu	37	chr14	59939767	59939767	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaatgggcttgtcctgaTacttccactataacagcttt	8	9	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59939767	C	C	59939767	2	2	1	1	0	0	0	0	0	0	0	1	1765	1393	49	5		5	C14orf149	14	59939767	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	7458588	59939767	47409773	326	326											
RTN1	6252	broad.mit.edu	37	chr14	60074059	60074059	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaaacagacttgtagatGcggaaactgatggtggctga	13	5	0	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60074059	A	A	60074059	2	1	1	1	0	0	0	0	0	0	0	1	13836	1306	46	4		4	RTN1	14	60074059	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	134292	60074059	47275481	327	327											
KCNH5	27133	broad.mit.edu	37	chr14	63483638	63483638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctataaactacaggccaatcCacaatctgggcatttcccag	6	13	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63483638	A	A	63483638	2	1	1	1	0	0	0	0	0	0	0	1	8105	581	21	2		2	KCNH5	14	63483638	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	3409579	63483638	43865902	328	328											
COQ6	51004	broad.mit.edu	37	chr14	74416829	74416829	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccacccctttctagctttGgcgtctggttggcttccagg	11	13	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74416829	T	T	74416829	1	4	1	0	1	0	0	0	0	0	0	0	3781	1363	47	2		2	COQ6	14	74416829	5'Flank	SNP	G	TCGA-05-4244-01A-01D-1105-08	10933191	74416829	32932711	329	329											
LTBP2	4053	broad.mit.edu	37	chr14	74992709	74992709	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccagctcacacatagtaactCcactcctgattaagggctct	6	14	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74992709	G	G	74992709	1	3	1	0	1	0	0	0	0	0	0	0	9161	870	30	4		4	LTBP2	14	74992709	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	575880	74992709	32356831	330	330											
C14orf148	122945	broad.mit.edu	37	chr14	77888948	77888948	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagaccaggagtcattgactCtgggttggaaaagataggat	13	5	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77888948	A	A	77888948	1	1	1	0	1	0	0	0	0	0	0	0	1764	928	32	3		3	C14orf148	14	77888948	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2896239	77888948	29460592	331	331											
VIPAR	63894	broad.mit.edu	37	chr14	77919802	77919802	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcatttcccacctctcttCtgacaatcaagaaggctgag	6	13	4	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77919802	A	A	77919802	1	1	1	0	1	0	0	0	0	0	0	0	17295	928	32	3		3	VIPAR	14	77919802	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	30854	77919802	29429738	332	332											
TSHR	7253	broad.mit.edu	37	chr14	81498719	81498719	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatatgaaaccatttttcTagcccaccttagagaagact	7	9	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81498719	C	C	81498719	1	2	1	0	1	0	0	0	0	0	0	0	16747	1537	53	5		5	TSHR	14	81498719	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	3578917	81498719	25850821	333	333											
SERPINA3	12	broad.mit.edu	37	chr14	95090004	95090004	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagaagcatctgctgcCacagcagtcaaaatcaccct	8	14	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95090004	T	T	95090004	2	4	1	1	0	0	0	0	0	0	0	1	14203	581	21	4		4	SERPINA3	14	95090004	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	13591285	95090004	12259536	334	334											
BRF1	2972	broad.mit.edu	37	chr14	105692282	105692282	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagccaccctgcccggtGgtaaacttacattctgtaga	10	12	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105692282	A	A	105692282	1	1	1	0	1	0	0	0	0	0	0	0	1519	1363	47	4		4	BRF1	14	105692282	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	10602278	105692282	1657258	335	335											
TRPM1	4308	broad.mit.edu	37	chr15	31329913	31329913	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttcaggaggaggcctcaCtgtgtaaaaccagaacttga	11	8	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31329913	G	G	31329913	5	3	1	1	0	0	0	0	0	0	1	0	16710	579	20	4	2341	4	TRPM1	15	31329913	Splice_Site	SNP	C	TCGA-05-4244-01A-01D-1105-08		31329913	71201479	336	336											
RYR3	6263	broad.mit.edu	37	chr15	33873624	33873624	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattttcagctttaaaaggTgaatgatacaggaggggaaa	12	4	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33873624	C	C	33873624	1	2	1	0	1	0	0	0	0	0	0	0	13881	1711	59	5		5	RYR3	15	33873624	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	2543711	33873624	68657768	337	337											
SLC12A6	9990	broad.mit.edu	37	chr15	34610759	34610759	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagctcccaagttgcgtactCacctggttcatctgaatcct	7	13	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34610759	T	T	34610759	1	4	1	0	1	0	0	0	0	0	0	0	14500	841	29	4		4	SLC12A6	15	34610759	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	737135	34610759	67920633	338	338											
CASC5	57082	broad.mit.edu	37	chr15	40915482	40915482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaatggtgaaagtgaccGtctagtagcaaatgacagcc	12	7	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40915482	T	T	40915482	3	4	1	1	0	0	0	0	1	0	0	0	2689	1145	40	3	3136	3	CASC5	15	40915482	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	6304723	40915482	61615910	339	339											
ATP8B4	79895	broad.mit.edu	37	chr15	50279569	50279569	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggttcccacagagctggcCttgggtcacatgctgtacct	11	12	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50279569	A	A	50279569	1	1	1	0	1	0	0	0	0	0	0	0	1201	696	24	2		2	ATP8B4	15	50279569	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	9364087	50279569	52251823	340	340											
SPPL2A	84888	broad.mit.edu	37	chr15	51017504	51017504	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatagatcagttttggtactCtgatgactactggcaactgt	9	7	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51017504	A	A	51017504	3	1	1	1	0	0	0	0	1	0	0	0	15206	913	32	3	415	3	SPPL2A	15	51017504	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	737935	51017504	51513888	341	341											
WDR72	256764	broad.mit.edu	37	chr15	53992108	53992108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagccacggaatggtcaCcgcacacacagcaaattatc	10	12	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53992108	A	A	53992108	3	1	1	1	0	0	0	0	1	0	0	0	17449	507	18	3	1736	3	WDR72	15	53992108	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2974604	53992108	48539284	342	342											
VPS13C	54832	broad.mit.edu	37	chr15	62239393	62239393	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagaagtaactacttaccAtgtattttaatatctgcaat	4	7	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62239393	G	G	62239393	2	3	1	1	0	0	0	0	0	0	0	1	17318	231	8	5		5	VPS13C	15	62239393	Silent	SNP	A	TCGA-05-4244-01A-01D-1105-08	8247285	62239393	40291999	343	343											
NEIL1	79661	broad.mit.edu	37	chr15	75641515	75641515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttcagctggtgccccGcgaggagctgccacgccatg	12	15	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75641515	T	T	75641515	3	4	1	1	0	0	0	0	1	0	0	0	10413	1087	38	3	271	3	NEIL1	15	75641515	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	13402122	75641515	26889877	344	344											
CPEB1	64506	broad.mit.edu	37	chr15	83215263	83215263	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatcttctaggtaggggtcAatctgaacctgcacaaaggc	11	9	4	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83215263	T	T	83215263	2	4	1	1	0	0	0	0	0	0	0	1	3832	126	5	5		5	CPEB1	15	83215263	Silent	SNP	A	TCGA-05-4244-01A-01D-1105-08	7573748	83215263	19316129	345	345											
ZNF592	9640	broad.mit.edu	37	chr15	85341292	85341292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagtgagtgcagctccaGggccagcaggccctgtggag	15	13	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85341292	T	T	85341292	1	4	1	0	1	0	0	0	0	0	0	0	18149	1015	35	2		2	ZNF592	15	85341292	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2126029	85341292	17190100	346	346											
ACAN	176	broad.mit.edu	37	chr15	89392926	89392926	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaaccagacgggcctcccaGacccactgtcccggcaccat	8	19	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89392926	T	T	89392926	3	4	1	1	0	0	0	0	1	0	0	0	117	942	33	3	2024	3	ACAN	15	89392926	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	4051634	89392926	13138466	347	347											
SOLH	6650	broad.mit.edu	37	chr16	600778	600779	+	Intron	INS	-	C	C													ggtcccctgccggtgagggtINScccggtcggtgagggtcccg					rs146137561	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	600779	C	C	600778	6	5	1	0	1	1	1	0	0	0	0	0	15039	1682	58	0		0	SOLH	16	600778	Intron	INS	-	TCGA-05-4244-01A-01D-1105-08		600778	89753975	348	348											
CCNF	899	broad.mit.edu	37	chr16	2499482	2499482	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtaaggagtggcccttccCagggatgcctgtgtcgggga	17	9	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2499482	T	T	2499482	1	4	1	0	1	0	0	0	0	0	0	0	2952	609	21	4		4	CCNF	16	2499482	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1898704	2499482	87855271	349	349											
SRRM2	23524	broad.mit.edu	37	chr16	2807381	2807381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgtgcgcatggagagGgaggggccccttttgggaat	17	7	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2807381	T	T	2807381	1	4	1	0	1	0	0	0	0	0	0	0	15287	1247	43	2		2	SRRM2	16	2807381	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	307899	2807381	87547372	350	350											
ZNF174	7727	broad.mit.edu	37	chr16	3451893	3451893	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccgttccccctaacatcCtcagagaaccttcgtttcta	4	16	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3451893	A	A	3451893	1	1	1	0	1	0	0	0	0	0	0	0	17870	696	24	2		2	ZNF174	16	3451893	5'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	644512	3451893	86902860	351	351											
BTBD12	84464	broad.mit.edu	37	chr16	3634841	3634841	+	Frame_Shift_Del	DEL	G	-	-													atcggcgttatgggcactttGgggggcaagttcttcttccg							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3634841	-	-	3634841	7	5	1	1	0	1	0	1	0	0	0	0	1549	1335	47	0	848	0	BTBD12	16	3634841	Frame_Shift_Del	DEL	G	TCGA-05-4244-01A-01D-1105-08	182948	3634841	86719912	352	352											
TFAP4	7023	broad.mit.edu	37	chr16	4312298	4312298	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcatgcccatgccagggaGagggagccatgaaggacagg	17	9	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4312298	A	A	4312298	1	1	1	0	1	0	0	0	0	0	0	0	15915	957	33	4		4	TFAP4	16	4312298	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	677457	4312298	86042455	353	353											
C16orf71	146562	broad.mit.edu	37	chr16	4790184	4790184	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcctgcagaattggccacaGaacctgggtgcagacagaac	12	11	0	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4790184	A	A	4790184	3	1	1	1	0	0	0	0	1	0	0	0	1844	943	33	4	317	4	C16orf71	16	4790184	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	477886	4790184	85564569	354	354											
ABAT	18	broad.mit.edu	37	chr16	8844285	8844285	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctttctccaagaatgcaGaggctgtgcattttttctgc	8	9	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8844285	T	T	8844285	4	4	1	1	0	0	0	0	0	1	0	0	27	943	33	3	219	3	ABAT	16	8844285	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	4054101	8844285	81510468	355	355											
USP7	7874	broad.mit.edu	37	chr16	8988972	8988972	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgtgacaagcatctcattCtctttgtctatgtccacctg	6	12	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8988972	T	T	8988972	2	4	1	1	0	0	0	0	0	0	0	1	17215	912	32	4		4	USP7	16	8988972	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	144687	8988972	81365781	356	356											
SMG1	23049	broad.mit.edu	37	chr16	18882139	18882139	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atacctctgtaaaagatcatCtggcaaggaagaggacagag	11	7	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18882139	T	T	18882139	3	4	1	1	0	0	0	0	1	0	0	0	14909	913	32	4	8799	4	SMG1	16	18882139	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	9893167	18882139	71472614	357	357											
GP2	2813	broad.mit.edu	37	chr16	20329820	20329820	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaagccctgcacttactTaacacacttacgaaggcaag	6	12	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20329820	C	C	20329820	1	2	1	0	1	0	0	0	0	0	0	0	6647	1769	61	5		5	GP2	16	20329820	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	1447681	20329820	70024933	358	358											
SCNN1G	6340	broad.mit.edu	37	chr16	23224089	23224089	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgcaggtatgtggaccCcaaggggtgagacgggtggc	18	9	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23224089	T	T	23224089	1	4	1	0	1	0	0	0	0	0	0	0	14043	638	22	4		4	SCNN1G	16	23224089	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2894269	23224089	67130664	359	359											
DCTN5	84516	broad.mit.edu	37	chr16	23669925	23669925	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtagtgtcataaggccacCattcaagaagttcagcaaag	9	9	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23669925	T	T	23669925	3	4	1	1	0	0	0	0	1	0	0	0	4343	594	21	4	225	4	DCTN5	16	23669925	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	445836	23669925	66684828	360	360											
ERN2	10595	broad.mit.edu	37	chr16	23718140	23718140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgtcatctgggtctccCctgactcagggtccaccaca	9	15	5	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23718140	T	T	23718140	3	4	1	1	0	0	0	0	1	0	0	0	5280	623	22	4	2426	4	ERN2	16	23718140	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	48215	23718140	66636613	361	361											
ERN2	10595	broad.mit.edu	37	chr16	23718374	23718374	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcagggagaggcatgaacCagctcagggatggtgaatgg	18	7	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23718374	T	T	23718374	2	4	1	1	0	0	0	0	0	0	0	1	5280	581	21	4		4	ERN2	16	23718374	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	234	23718374	66636379	362	362											
TNRC6A	27327	broad.mit.edu	37	chr16	24788604	24788604	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttaaggtgttaaacagcCagtcagaaagcagtgcttta	10	7	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24788604	G	G	24788604	3	3	1	1	0	0	0	0	1	0	0	0	16463	595	21	4	532	4	TNRC6A	16	24788604	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1070230	24788604	65566149	363	363											
ZNF48	197407	broad.mit.edu	37	chr16	30409831	30409831	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgaagtccctcacactcGggtgagccttttggcctgcc	10	16	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30409831	T	T	30409831	2	4	1	1	0	0	0	0	0	0	0	1	18061	1103	39	1		1	ZNF48	16	30409831	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	5621227	30409831	59944922	364	364											
PHKB	5257	broad.mit.edu	37	chr16	47697718	47697718	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagcctaaagaaaatggacCaatattaaagatagttattc	6	5	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47697718	T	T	47697718	1	4	1	0	1	0	0	0	0	0	0	0	11940	609	21	4		4	PHKB	16	47697718	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	17287887	47697718	42657035	365	365											
ZNF423	23090	broad.mit.edu	37	chr16	49671383	49671383	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggggcaggaatagacctcCatgaaggactgcgtgggctg	16	8	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49671383	T	T	49671383	3	4	1	1	0	0	0	0	1	0	0	0	18025	594	21	4	2194	4	ZNF423	16	49671383	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1973665	49671383	40683370	366	366											
CES1	1066	broad.mit.edu	37	chr16	55853504	55853504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtcgcaggcagtgaacCatgacagcagaggtggtggt	15	8	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55853504	A	A	55853504	3	1	1	1	0	0	0	0	1	0	0	0	3299	594	21	2	889	2	CES1	16	55853504	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	6182121	55853504	34501249	367	367											
MT1E	4493	broad.mit.edu	37	chr16	56660200	56660200	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcggtaaaacaggagggtCcttgcccttcccagcgttag	13	11	0	0	rs143750516	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56660200	T	T	56660200	1	4	1	0	1	0	0	0	0	0	0	0	9993	870	30	4		4	MT1E	16	56660200	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	806696	56660200	33694553	368	368											
OR1A1	8383	broad.mit.edu	37	chr17	3119264	3119264	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacagctatattttggctgCaatggcatatgatcgagctg	11	7	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3119264	T	T	3119264	3	4	1	1	0	0	0	0	1	0	0	0	11043	710	25	4	352	4	OR1A1	17	3119264	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08		3119264	78075946	369	369											
P2RX1	5023	broad.mit.edu	37	chr17	3819547	3819547	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctggggctcagaactgaGccccctgcacggcctctgct	13	16	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3819547	A	A	3819547	1	1	1	0	1	0	0	0	0	0	0	0	11433	986	34	4		4	P2RX1	17	3819547	5'UTR	SNP	G	TCGA-05-4244-01A-01D-1105-08	700283	3819547	77375663	370	370											
AIPL1	23746	broad.mit.edu	37	chr17	6337463	6337463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctagacacactgttcaaGgcccggcagaagccaccccc	9	17	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6337463	T	T	6337463	1	4	1	0	1	0	0	0	0	0	0	0	436	1015	35	2		2	AIPL1	17	6337463	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	2517916	6337463	74857747	371	371											
DLG4	1742	broad.mit.edu	37	chr17	7093987	7093987	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagaccaagggcccaggtGatggaggcagggcgagtcca	16	11	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7093987	T	T	7093987	1	4	1	0	1	0	0	0	0	0	0	0	4597	1305	45	3		3	DLG4	17	7093987	3'UTR	SNP	G	TCGA-05-4244-01A-01D-1105-08	756524	7093987	74101223	372	372											
CHRNB1	1140	broad.mit.edu	37	chr17	7357633	7357633	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggagagaagatggggctcTcaatctttgccctgctgacc	12	10	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7357633	C	C	7357633	3	2	1	1	0	0	0	0	1	0	0	0	3421	1551	54	5	868	5	CHRNB1	17	7357633	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	263646	7357633	73837577	373	373											
GLP2R	9340	broad.mit.edu	37	chr17	9791285	9791285	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtatggttttgccaatGgagaggtatgatttccacgt	12	6	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9791285	T	T	9791285	4	4	1	1	0	0	0	0	0	1	0	0	6517	1349	47	2	1367	2	GLP2R	17	9791285	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	2433652	9791285	71403925	374	374											
MYH2	4620	broad.mit.edu	37	chr17	10451096	10451096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggatggtccctttgaCaaaggattctttgggctccg	12	10	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10451096	A	A	10451096	3	1	1	1	0	0	0	0	1	0	0	0	10129	478	17	3	5835	3	MYH2	17	10451096	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	659811	10451096	70744114	375	375											
PIRT	644139	broad.mit.edu	37	chr17	10728733	10728733	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcactcagcttcaaggtgTaggccaagcaggtgatgacc	12	10	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10728733	C	C	10728733	3	2	1	1	0	0	0	0	1	0	0	0	12040	1638	57	5	187	5	PIRT	17	10728733	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	277637	10728733	70466477	376	376											
CPD	1362	broad.mit.edu	37	chr17	28778672	28778672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtttgaggcatgagagGgtacccattgattctacatg	11	7	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28778672	T	T	28778672	1	4	1	0	1	0	0	0	0	0	0	0	3830	1247	43	2		2	CPD	17	28778672	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	18049939	28778672	52416538	377	377											
CCL1	6346	broad.mit.edu	37	chr17	32687784	32687784	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaggtcccctaaactgctCttgctaggccttgggctccc	10	16	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32687784	A	A	32687784	1	1	1	0	1	0	0	0	0	0	0	0	2910	928	32	3		3	CCL1	17	32687784	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	3909112	32687784	48507426	378	378											
CCT6B	10693	broad.mit.edu	37	chr17	33266100	33266100	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaacagaggaagactctgtCtaaaaatatacatatataca	6	7	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33266100	G	G	33266100	1	3	1	0	1	0	0	0	0	0	0	0	2988	928	32	4		4	CCT6B	17	33266100	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	578316	33266100	47929110	379	379											
ACACA	31	broad.mit.edu	37	chr17	35693144	35693144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaccggcctgctagccCatgctctgatgttaatgaca	10	13	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35693144	A	A	35693144	1	1	1	0	1	0	0	0	0	0	0	0	106	609	21	2		2	ACACA	17	35693144	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2427044	35693144	45502066	380	380											
C17orf98	388381	broad.mit.edu	37	chr17	36991511	36991511	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagggctggagtgttcctGcggtagccaaaccttccatt	13	11	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36991511	A	A	36991511	2	1	1	1	0	0	0	0	0	0	0	1	1911	1306	46	4		4	C17orf98	17	36991511	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	1298367	36991511	44203699	381	381											
CDK12	51755	broad.mit.edu	37	chr17	37618415	37618424	+	Frame_Shift_Del	DEL	AACAGCAGAG	-	-													catcgggaggcggcagctctAacagcagagagcgtcaccgc							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37618424	-	-	37618415	7	5	1	1	0	1	0	1	0	0	0	0	3158	362	13	0	93	0	CDK12	17	37618415	Frame_Shift_Del	DEL	AACAGCAGAG	TCGA-05-4244-01A-01D-1105-08	626904	37618415	43576795	382	382											
THRA	7067	broad.mit.edu	37	chr17	38242898	38242898	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctccccctggtgggcaggGagcctcagtgagaggctgaa	16	11	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38242898	A	A	38242898	1	1	1	0	1	0	0	0	0	0	0	0	15996	1189	41	4		4	THRA	17	38242898	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	624483	38242898	42952312	383	383											
TNS4	84951	broad.mit.edu	37	chr17	38644981	38644981	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggattgagatgctgggggaaTttgggggtcgaggggagaga	22	2	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38644981	A	A	38644981	3	1	1	1	0	0	0	0	1	0	0	0	16468	1493	52	5	1511	5	TNS4	17	38644981	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	402083	38644981	42550229	384	384											
KLHL10	317719	broad.mit.edu	37	chr17	40003692	40003692	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagtaccacacacacacaAaaaacacattacccctagat	2	14	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40003692	C	C	40003692	1	2	1	0	1	0	0	0	0	0	0	0	8437	29	1	5		5	KLHL10	17	40003692	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	1358711	40003692	41191518	385	385											
TUBG1	7283	broad.mit.edu	37	chr17	40766499	40766499	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaggccacctccactgctcCtatgcccaccccaggtccac	7	20	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40766499	G	G	40766499	1	3	1	0	1	0	0	0	0	0	0	0	16890	696	24	4		4	TUBG1	17	40766499	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	762807	40766499	40428711	386	386											
HDAC5	10014	broad.mit.edu	37	chr17	42169750	42169750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgagagcagcccttaccCccaggcccggcacctgtgat	10	16	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42169750	A	A	42169750	2	1	1	1	0	0	0	0	0	0	0	1	7077	637	22	2		2	HDAC5	17	42169750	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	1403251	42169750	39025460	387	387											
ADAM11	4185	broad.mit.edu	37	chr17	42850111	42850111	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagtggggagctggcaCtgtccctggctggagtccag	16	12	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42850111	G	G	42850111	1	3	1	0	1	0	0	0	0	0	0	0	235	580	20	4		4	ADAM11	17	42850111	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	680361	42850111	38345099	388	388											
KIF18B	146909	broad.mit.edu	37	chr17	43010183	43010183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgagagccccagctaagCacaggaggggaggggcagac	16	12	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43010183	A	A	43010183	1	1	1	0	1	0	0	0	0	0	0	0	8351	725	25	3		3	KIF18B	17	43010183	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	160072	43010183	38185027	389	389											
COL1A1	1277	broad.mit.edu	37	chr17	48267568	48267568	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaggaagatgcttgggtggGaaacaatcccgtctccaccc	12	12	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48267568	A	A	48267568	1	1	1	0	1	0	0	0	0	0	0	0	3709	1189	41	4		4	COL1A1	17	48267568	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	5257385	48267568	32927642	390	390											
LUC7L3	51747	broad.mit.edu	37	chr17	48823140	48823140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgtctaaaaaaggagaaGcaagaaagagaagaaagaga	13	3	1	5			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48823140	T	T	48823140	3	4	1	1	0	0	0	0	1	0	0	0	9171	962	34	3	783	3	LUC7L3	17	48823140	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	555572	48823140	32372070	391	391											
TOM1L1	10040	broad.mit.edu	37	chr17	53024708	53024708	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttctagcagtgcatctAgtcagcagattattgtagcc	8	9	4	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53024708	G	G	53024708	1	3	1	0	1	0	0	0	0	0	0	0	16475	435	15	5		5	TOM1L1	17	53024708	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	4201568	53024708	28170502	392	392											
C17orf64	124773	broad.mit.edu	37	chr17	58506804	58506804	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcccaagctctgccatgcaTgggggctgcacagcaacatc	11	14	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58506804	C	C	58506804	3	2	1	1	0	0	0	0	1	0	0	0	1888	1464	51	5	529	5	C17orf64	17	58506804	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	5482096	58506804	22688406	393	393											
KCNH6	81033	broad.mit.edu	37	chr17	61619723	61619723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgggcagatctgctggaGgtgctggacatgtacccggc	16	11	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61619723	T	T	61619723	3	4	1	1	0	0	0	0	1	0	0	0	8106	991	35	2	2110	2	KCNH6	17	61619723	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3112919	61619723	19575487	394	394											
LLGL2	3993	broad.mit.edu	37	chr17	73551952	73551953	+	Intron	DEL	AG	-	-													gggcagagtcacaaagggacAgggggtggggcctggtaaat					rs77073190		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73551953	-	-	73551952	6	5	1	0	1	1	0	1	0	0	0	0	8908	203	7	0		0	LLGL2	17	73551952	Intron	DEL	AG	TCGA-05-4244-01A-01D-1105-08	11932229	73551952	7643258	395	395											
UBE2O	63893	broad.mit.edu	37	chr17	74387720	74387720	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggcgggacaccttccctcAgtgggtgagagaggcccaca	15	12	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74387720	G	G	74387720	1	3	1	0	1	0	0	0	0	0	0	0	16994	203	7	5		5	UBE2O	17	74387720	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	835768	74387720	6807490	396	396											
C18orf1	753	broad.mit.edu	37	chr18	13645087	13645087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatttatggtcatcattgcGctcaaactgtcttcaagcct	6	11	5	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645087	T	T	13645087	1	4	1	0	1	0	0	0	0	0	0	0	1912	1102	38	3		3	C18orf1	18	13645087	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08		13645087	64432161	397	397											
MC2R	4158	broad.mit.edu	37	chr18	13884609	13884609	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccatggattctaaaacCagggatcagccattctacca	6	12	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13884609	A	A	13884609	1	1	1	0	1	0	0	0	0	0	0	0	9457	609	21	2		2	MC2R	18	13884609	3'UTR	SNP	C	TCGA-05-4244-01A-01D-1105-08	239522	13884609	64192639	398	398											
TTC39C	125488	broad.mit.edu	37	chr18	21660779	21660779	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctttttcacctttgcataTccatggtgcccccaaacctg	6	15	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21660779	A	A	21660779	3	1	1	1	0	0	0	0	1	0	0	0	16835	1435	50	5	709	5	TTC39C	18	21660779	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	7776170	21660779	56416469	399	399											
C18orf10	25941	broad.mit.edu	37	chr18	34385560	34385560	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaataacctaagcccaggtaTtgtttcgccccatggctgac	9	12	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34385560	C	C	34385560	1	2	1	0	1	0	0	0	0	0	0	0	1913	1508	52	5		5	C18orf10	18	34385560	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	12724781	34385560	43691688	400	400											
DCC	1630	broad.mit.edu	37	chr18	50592285	50592285	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taggacacgtctgcgaggctGagacccctcatggcctctcc	11	15	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50592285	A	A	50592285	1	1	1	0	1	0	0	0	0	0	0	0	4315	1305	45	4		4	DCC	18	50592285	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	16206725	50592285	27484963	401	401											
DCC	1630	broad.mit.edu	37	chr18	50592527	50592527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgcacagctcattgtcCctaagcctggtaagacaatg	9	12	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50592527	A	A	50592527	3	1	1	1	0	0	0	0	1	0	0	0	4315	623	22	2	1278	2	DCC	18	50592527	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	242	50592527	27484721	402	402											
CCBE1	147372	broad.mit.edu	37	chr18	57363928	57363928	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtcgtcgcgattttgctctCtgagcagatttctctatgaa	9	9	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57363928	T	T	57363928	3	4	1	1	0	0	0	0	1	0	0	0	2757	922	32	4	1115	4	CCBE1	18	57363928	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	6771401	57363928	20713320	403	403											
RTTN	25914	broad.mit.edu	37	chr18	67684536	67684536	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgctttgaacacagtGggtgcttaataaatgcctag	10	8	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67684536	A	A	67684536	1	1	1	0	1	0	0	0	0	0	0	0	13848	1363	47	4		4	RTTN	18	67684536	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	10320608	67684536	10392712	404	404											
RTTN	25914	broad.mit.edu	37	chr18	67801779	67801779	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attggaaggattaacagaccTatttcataaaagaaaaacaa	6	5	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67801779	A	A	67801779	5	1	1	1	0	0	0	0	0	0	1	0	13848	1536	53	5	3904	5	RTTN	18	67801779	Splice_Site	SNP	T	TCGA-05-4244-01A-01D-1105-08	117243	67801779	10275469	405	405											
TSHZ1	10194	broad.mit.edu	37	chr18	72999184	72999184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagccgtcctatgctggcGgcgtgaagtcgctgtcttcc	13	13	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72999184	T	T	72999184	3	4	1	1	0	0	0	0	1	0	0	0	16748	1116	39	1	1689	1	TSHZ1	18	72999184	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	5197405	72999184	5078064	406	406											
REXO1	57455	broad.mit.edu	37	chr19	1816518	1816518	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaacggcctggacgtcaCgcagcgtgacacttgtgtcg	14	12	1	2	rs142299409		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1816518	T	T	1816518	3	4	1	1	0	0	0	0	1	0	0	0	13349	536	19	4	309	4	REXO1	19	1816518	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08		1816518	57312465	407	407											
SGTA	6449	broad.mit.edu	37	chr19	2765324	2765324	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accggcccggtgtccacacaGaccggagggggtgtcaggga	17	12	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2765324	A	A	2765324	1	1	1	0	1	0	0	0	0	0	0	0	14338	957	33	4		4	SGTA	19	2765324	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	948806	2765324	56363659	408	408											
DUS3L	56931	broad.mit.edu	37	chr19	5789413	5789413	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgggtgtggggccctggctGaaccggcgcagggcctgctc	19	13	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5789413	A	A	5789413	2	1	1	1	0	0	0	0	0	0	0	1	4847	1281	45	4		4	DUS3L	19	5789413	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	3024089	5789413	53339570	409	409											
ARHGEF18	23370	broad.mit.edu	37	chr19	7532078	7532078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggtgcggctctcactcGcctggccctggccctccgca	12	19	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7532078	T	T	7532078	1	4	1	0	1	0	0	0	0	0	0	0	903	1102	38	3		3	ARHGEF18	19	7532078	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	1742665	7532078	51596905	410	410											
MUC16	94025	broad.mit.edu	37	chr19	9068625	9068625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttaaattttgaggtgaaCgagtcacaggttctaagttt	9	6	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9068625	A	A	9068625	3	1	1	1	0	0	0	0	1	0	0	0	10067	536	19	3	25030	3	MUC16	19	9068625	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1536547	9068625	50060358	411	411											
SLC1A6	6511	broad.mit.edu	37	chr19	15061009	15061009	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcagagctggaggcccctcAcatagcactctcgttgcctc	11	15	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15061009	T	T	15061009	4	4	1	1	0	0	0	0	0	0	0	0	14549	172	6	5	5	5	SLC1A6	19	15061009	Nonstop_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	5992384	15061009	44067974	412	412											
CYP4F22	126410	broad.mit.edu	37	chr19	15626343	15626343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggagttcaagaccagcCtggccaatatggtgacaccc	11	12	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15626343	A	A	15626343	1	1	1	0	1	0	0	0	0	0	0	0	4222	696	24	2		2	CYP4F22	19	15626343	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	565334	15626343	43502640	413	413											
CYP4F2	8529	broad.mit.edu	37	chr19	15989716	15989716	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggaccaccttcatctcCgccatcgcgaacgtctgccc	8	19	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15989716	T	T	15989716	2	4	1	1	0	0	0	0	0	0	0	1	4221	639	23	4		4	CYP4F2	19	15989716	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	363373	15989716	43139267	414	414											
GDF15	9518	broad.mit.edu	37	chr19	18499574	18499574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagttccgggcggcaaaCatgcacgcgcagatcaagac	12	13	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18499574	A	A	18499574	3	1	1	1	0	0	0	0	1	0	0	0	6377	477	17	3	762	3	GDF15	19	18499574	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	2509858	18499574	40629409	415	415											
GMIP	51291	broad.mit.edu	37	chr19	19750925	19750925	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttctgctgggccactGtctccatggccagggttccc	10	15	3	0	rs143480494		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19750925	A	A	19750925	3	1	1	1	0	0	0	0	1	0	0	0	6555	1377	48	4	2466	4	GMIP	19	19750925	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	1251351	19750925	39378058	416	416											
ZNF430	80264	broad.mit.edu	37	chr19	21239980	21239980	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatactggagagaaaccctAcagatgtgaagaatgtggca	11	7	1	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21239980	G	G	21239980	3	3	1	1	0	0	0	0	1	0	0	0	18031	391	14	5	884	5	ZNF430	19	21239980	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	1489055	21239980	37889003	417	417											
ZNF676	163223	broad.mit.edu	37	chr19	22363671	22363671	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctttgccacattcttcaCatttgtagggcttctcttca	6	11	4	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22363671	T	T	22363671	3	4	1	1	0	0	0	0	1	0	0	0	18210	478	17	4	922	4	ZNF676	19	22363671	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1123691	22363671	36765312	418	418											
FXYD1	5348	broad.mit.edu	37	chr19	35631042	35631042	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcaccatggccaaggCaggtgagtgcaggggaggct	15	11	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35631042	T	T	35631042	3	4	1	1	0	0	0	0	1	0	0	0	6177	710	25	4	61	4	FXYD1	19	35631042	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	13267371	35631042	23497941	419	419											
PSG8	440533	broad.mit.edu	37	chr19	43258471	43258471	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccctattgccaaggatacTgggatccgcttaccagagac	9	12	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43258471	G	G	43258471	2	3	1	1	0	0	0	0	0	0	0	1	12767	1567	55	5		5	PSG8	19	43258471	Silent	SNP	T	TCGA-05-4244-01A-01D-1105-08	7627429	43258471	15870512	420	420											
PSG6	5675	broad.mit.edu	37	chr19	43412072	43412072	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccacaggcatccttcattcAgagttggcatctcccacctg	7	15	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43412072	G	G	43412072	1	3	1	0	1	0	0	0	0	0	0	0	12765	203	7	5		5	PSG6	19	43412072	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	153601	43412072	15716911	421	421											
PSG6	5675	broad.mit.edu	37	chr19	43522877	43522878	+	Intron	INS	-	T	T													ctggcctctggccatgtgtaINStttgggatggcagcctggct							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43522878	T	T	43522877	6	5	1	0	1	1	1	0	0	0	0	0	12765	464	16	0		0	PSG6	19	43522877	Intron	INS	-	TCGA-05-4244-01A-01D-1105-08	110805	43522877	15606106	422	422											
PSG4	5672	broad.mit.edu	37	chr19	43698862	43698862	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaccttcaagtcccagccAaactccctctatgttcactg	4	17	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43698862	T	T	43698862	1	4	1	0	1	0	0	0	0	0	0	0	12763	145	5	5		5	PSG4	19	43698862	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	175985	43698862	15430121	423	423											
IRGC	56269	broad.mit.edu	37	chr19	44222905	44222905	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacgggcgagtcgggcgcGggcaagtcctccctcatcaa	14	14	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44222905	A	A	44222905	2	1	1	1	0	0	0	0	0	0	0	1	7908	1103	39	4		4	IRGC	19	44222905	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	524043	44222905	14906078	424	424											
CRX	1406	broad.mit.edu	37	chr19	48342701	48342701	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaggcgggcacgtccccaaGaccctccacagatgtgtgtc	12	14	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48342701	T	T	48342701	3	4	1	1	0	0	0	0	1	0	0	0	3934	942	33	3	387	3	CRX	19	48342701	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	4119796	48342701	10786282	425	425											
KLK7	5650	broad.mit.edu	37	chr19	51483127	51483127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgtaaaccttcgtgcagtCctggggggagatgagcttga	14	8	0	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51483127	A	A	51483127	3	1	1	1	0	0	0	0	1	0	0	0	8480	855	30	3	246	3	KLK7	19	51483127	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	3140426	51483127	7645856	426	426											
CEACAM18	729767	broad.mit.edu	37	chr19	51986168	51986168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggtctaggggttagcCcgaggtgcacaatggggaac	18	8	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51986168	A	A	51986168	1	1	1	0	1	0	0	0	0	0	0	0	3219	638	22	2		2	CEACAM18	19	51986168	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	503041	51986168	7142815	427	427											
ZNF578	147660	broad.mit.edu	37	chr19	52976588	52976588	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taatgtttctcttcagtatgGattctgtgatgatatgcaag	9	5	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52976588	T	T	52976588	1	4	1	0	1	0	0	0	0	0	0	0	18137	1189	41	3		3	ZNF578	19	52976588	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	990420	52976588	6152395	428	428											
ZNF83	55769	broad.mit.edu	37	chr19	53117543	53117543	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgctcactacatttgtagTgttctgtcccaatatttgct	6	11	2	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53117543	C	C	53117543	3	2	1	1	0	0	0	0	1	0	0	0	18312	1696	59	5	1279	5	ZNF83	19	53117543	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	140955	53117543	6011440	429	429											
CPXM1	56265	broad.mit.edu	37	chr20	2776024	2776024	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacagctccacagtgacctCaaagcagttggtgtgtaggt	13	9	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2776024	A	A	2776024	4	1	1	1	0	0	0	0	0	1	0	0	3869	835	29	3	457	3	CPXM1	20	2776024	Nonsense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08		2776024	60249496	430	430											
FASTKD5	60493	broad.mit.edu	37	chr20	3127954	3127954	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagctggacctctaagtcaGaagatcgggtatgaggcaaa	12	8	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3127954	A	A	3127954	3	1	1	1	0	0	0	0	1	0	0	0	5745	942	33	4	535	4	FASTKD5	20	3127954	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	351930	3127954	59897566	431	431											
PLCB1	23236	broad.mit.edu	37	chr20	8720888	8720888	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagtgatttgtttttcatCtaaagtaacctgaaatacat	5	5	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8720888	A	A	8720888	1	1	1	0	1	0	0	0	0	0	0	0	12122	928	32	3		3	PLCB1	20	8720888	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	5592934	8720888	54304632	432	432											
C20orf94	128710	broad.mit.edu	37	chr20	10536779	10536779	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagtgaactttgttgccaTttcatcatgagcaaccacat	7	9	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10536779	G	G	10536779	1	3	1	0	1	0	0	0	0	0	0	0	2143	1508	52	5		5	C20orf94	20	10536779	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	1815891	10536779	52488741	433	433											
SEL1L2	80343	broad.mit.edu	37	chr20	13856519	13856519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaagaaggcaagttgtaGcttcccttactcccatcacc	6	14	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13856519	T	T	13856519	1	4	1	0	1	0	0	0	0	0	0	0	14124	986	34	3		3	SEL1L2	20	13856519	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	3319740	13856519	49169001	434	434											
ENTPD6	955	broad.mit.edu	37	chr20	25187965	25187965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcacgaggtcttctacgGgatcatgtttgatgcaggaa	14	8	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25187965	T	T	25187965	3	4	1	1	0	0	0	0	1	0	0	0	5185	1232	43	2	321	2	ENTPD6	20	25187965	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	11331446	25187965	37837555	435	435											
TPX2	22974	broad.mit.edu	37	chr20	30370042	30370042	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagatgaacatctgtcatctCtgtttacagacctgttaccc	6	11	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30370042	T	T	30370042	1	4	1	0	1	0	0	0	0	0	0	0	16556	928	32	4		4	TPX2	20	30370042	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	5182077	30370042	32655478	436	436											
C20orf152	140894	broad.mit.edu	37	chr20	34572656	34572656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgctaataagctggaCcaggaagttcagaaggatgc	11	7	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34572656	A	A	34572656	3	1	1	1	0	0	0	0	1	0	0	0	2114	506	18	3	694	3	C20orf152	20	34572656	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	4202614	34572656	28452864	437	437											
PTPRT	11122	broad.mit.edu	37	chr20	41101011	41101011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggcgcaggcctcgcaGggtgtagtgggaggaggtct	21	7	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41101011	T	T	41101011	3	4	1	1	0	0	0	0	1	0	0	0	12920	991	35	2	3137	2	PTPRT	20	41101011	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	6528355	41101011	21924509	438	438											
PTPRT	11122	broad.mit.edu	37	chr20	41514452	41514452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggatcacatacctgtgGgcactgcctggtccagcatt	11	11	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41514452	T	T	41514452	3	4	1	1	0	0	0	0	1	0	0	0	12920	1232	43	2	4297	2	PTPRT	20	41514452	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	413441	41514452	21511068	439	439											
TPTE	7179	broad.mit.edu	37	chr21	10944559	10944559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttaaagcaatgtatttGgtatagaatgagaacatttg	8	3	0	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10944559	T	T	10944559	1	4	1	0	1	0	0	0	0	0	0	0	16554	1363	47	2		2	TPTE	21	10944559	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08		10944559	37185336	440	440											
TMPRSS15	5651	broad.mit.edu	37	chr21	19698600	19698600	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacggtactacagatgtaaAggaggaaaaatcatcttcat	8	6	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19698600	G	G	19698600	1	3	1	0	1	0	0	0	0	0	0	0	16369	87	3	5		5	TMPRSS15	21	19698600	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	8754041	19698600	28431295	441	441											
KRTAP21-2	337978	broad.mit.edu	37	chr21	32119384	32119384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacagccatagccacagCcagttccatagccagagcca	7	16	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32119384	A	A	32119384	3	1	1	1	0	0	0	0	1	0	0	0	8610	739	26	3	116	3	KRTAP21-2	21	32119384	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	12420784	32119384	16010511	442	442											
SYNJ1	8867	broad.mit.edu	37	chr21	34004174	34004174	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttaataccccctattcttCctgtctcaattattcttccc	1	15	4	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34004174	A	A	34004174	1	1	1	0	1	0	0	0	0	0	0	0	15571	870	30	3		3	SYNJ1	21	34004174	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	1884790	34004174	14125721	443	443											
UBASH3A	53347	broad.mit.edu	37	chr21	43838767	43838767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctctctctgagttactGtgtgagagtgcccacctgcc	9	13	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43838767	T	T	43838767	1	4	1	0	1	0	0	0	0	0	0	0	16965	1392	48	3		3	UBASH3A	21	43838767	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	9834593	43838767	4291128	444	444											
TRPM2	7226	broad.mit.edu	37	chr21	45826567	45826567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctcatccacaacgagCgccgggtggactggctgttc	11	15	1	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45826567	A	A	45826567	3	1	1	1	0	0	0	0	1	0	0	0	16711	768	27	3	2955	3	TRPM2	21	45826567	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	1987800	45826567	2303328	445	445											
BCR	613	broad.mit.edu	37	chr22	23603509	23603509	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacggatggcagcccctctCacctgtgctacctcacttgt	9	15	2	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23603509	A	A	23603509	1	1	1	0	1	0	0	0	0	0	0	0	1393	841	29	3		3	BCR	22	23603509	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08		23603509	27701057	446	446											
MYO18B	84700	broad.mit.edu	37	chr22	26351348	26351348	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggtgagtcctgtccccatCatgggctcttagcgactgag	12	12	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26351348	T	T	26351348	1	4	1	0	1	0	0	0	0	0	0	0	10160	841	29	4		4	MYO18B	22	26351348	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	2747839	26351348	24953218	447	447											
THOC5	8563	broad.mit.edu	37	chr22	29945181	29945181	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtttttgagattcttctGgagtcataacactgaagtca	8	6	4	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29945181	A	A	29945181	1	1	1	0	1	0	0	0	0	0	0	0	15991	1363	47	4		4	THOC5	22	29945181	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	3593833	29945181	21359385	448	448											
ZMAT5	55954	broad.mit.edu	37	chr22	30144421	30144421	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccacctcggaacatgtcgTaccagaccttcttggccttg	8	15	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30144421	C	C	30144421	3	2	1	1	0	0	0	0	1	0	0	0	17821	1638	57	5	419	5	ZMAT5	22	30144421	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	199240	30144421	21160145	449	449											
TOM1	10043	broad.mit.edu	37	chr22	35723405	35723405	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtggcaccaccccctgGggctcagatgactcctgccc	12	17	1	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35723405	T	T	35723405	1	4	1	0	1	0	0	0	0	0	0	0	16474	1247	43	2		2	TOM1	22	35723405	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	5578984	35723405	15581161	450	450											
APOL5	80831	broad.mit.edu	37	chr22	36123064	36123064	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcagagctggaagcacCtggaggatggggcaaggacg	17	9	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36123064	T	T	36123064	2	4	1	1	0	0	0	0	0	0	0	1	811	680	24	4		4	APOL5	22	36123064	Silent	SNP	C	TCGA-05-4244-01A-01D-1105-08	399659	36123064	15181502	451	451											
ZBED4	9889	broad.mit.edu	37	chr22	50280790	50280790	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgaaaaacttatctttttGaaagtgaatcttcccttaat	4	6	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50280790	A	A	50280790	2	1	1	1	0	0	0	0	0	0	0	1	17646	1281	45	4		4	ZBED4	22	50280790	Silent	SNP	G	TCGA-05-4244-01A-01D-1105-08	14157726	50280790	1023776	452	452											
KLHL34	257240	broad.mit.edu	37	chrX	21675972	21675972	+	5'UTR	DEL	G	-	-													ggcagggccggaggcatcccGgggcacaacactcccgggac							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21675972	-	-	21675972	6	5	1	0	1	1	0	1	0	0	0	0	8458	1131	39	0		0	KLHL34	23	21675972	5'UTR	DEL	G	TCGA-05-4244-01A-01D-1105-08		21675972	133594588	453	453											
POLA1	5422	broad.mit.edu	37	chrX	24844572	24844572	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacctcactgcaagtcagaGggcctatgcgcctgagcagc	11	13	2	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24844572	A	A	24844572	3	1	1	1	0	0	0	0	1	0	0	0	12282	1000	35	4	3698	4	POLA1	23	24844572	Missense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	3168600	24844572	130425988	454	454											
MAGEB6	158809	broad.mit.edu	37	chrX	26211902	26211903	+	Splice_Site	DNP	GG	TT	TT													acgtcactctctcccatccaGgtgccagccttcctagtctt							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26211903	TT	TT	26211902	5	4	1	1	0	0	0	0	0	0	1	0	9271	1014	35	2		2	MAGEB6	23	26211902	Splice_Site	DNP	GG	TCGA-05-4244-01A-01D-1105-08	1367330	26211902	129058658	455	455											
CYBB	1536	broad.mit.edu	37	chrX	37652910	37652910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtttctcttctctgccCttttcagcgattcacaccat	4	14	4	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37652910	A	A	37652910	1	1	1	0	1	0	0	0	0	0	0	0	4166	696	24	2		2	CYBB	23	37652910	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	11441008	37652910	117617650	456	456											
MAOB	4129	broad.mit.edu	37	chrX	43702885	43702885	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaactcagcttcagtcccAcatttgtcctccggattctt	5	15	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43702885	T	T	43702885	1	4	1	0	1	0	0	0	0	0	0	0	9318	174	6	5		5	MAOB	23	43702885	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	6049975	43702885	111567675	457	457											
TIMP1	7076	broad.mit.edu	37	chrX	47444781	47444781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaaccagtccctggggcgCggcctagcaaccacgagggg	14	15	0	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47444781	T	T	47444781	1	4	1	0	1	0	0	0	0	0	0	0	16040	783	27	4		4	TIMP1	23	47444781	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	3741896	47444781	107825779	458	458											
KDM5C	8242	broad.mit.edu	37	chrX	53230770	53230770	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtagacgccgctcttcttGcaccatgatgaacatctcct	7	14	3	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53230770	A	A	53230770	4	1	1	1	0	0	0	0	0	1	0	0	8205	1328	46	4	2809	4	KDM5C	23	53230770	Nonsense_Mutation	SNP	G	TCGA-05-4244-01A-01D-1105-08	5785989	53230770	102039790	459	459											
TAF1	6872	broad.mit.edu	37	chrX	70608725	70608725	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaacgactgaaggtgaacAccttcctcttagacaccact	7	13	1	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70608725	T	T	70608725	1	4	1	0	1	0	0	0	0	0	0	0	15632	174	6	5		5	TAF1	23	70608725	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	17377955	70608725	84661835	460	460											
RPS6KA6	27330	broad.mit.edu	37	chrX	83411048	83411048	+	Intron	DEL	A	-	-													tttttttgctaaatgtttagAagaggaacaaatggggaaaa							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83411048	-	-	83411048	6	5	1	0	1	1	0	1	0	0	0	0	13766	261	9	0		0	RPS6KA6	23	83411048	Intron	DEL	A	TCGA-05-4244-01A-01D-1105-08	12802323	83411048	71859512	461	461											
ZNF711	7552	broad.mit.edu	37	chrX	84510681	84510681	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaggaggttcttgtaactAattcagatacagaaactgtg	10	6	2	3			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84510681	T	T	84510681	3	4	1	1	0	0	0	0	1	0	0	0	18244	362	13	5	502	5	ZNF711	23	84510681	Missense_Mutation	SNP	A	TCGA-05-4244-01A-01D-1105-08	1099633	84510681	70759879	462	462											
CHM	1121	broad.mit.edu	37	chrX	85233802	85233802	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatacttccacatgttgaaTagttttgtccttcctgctaa	5	9	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85233802	C	C	85233802	3	2	1	1	0	0	0	0	1	0	0	0	3381	1406	49	5	1749	5	CHM	23	85233802	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	723121	85233802	70036758	463	463											
PCDH11X	27328	broad.mit.edu	37	chrX	91134263	91134263	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggtacctgtgtccgtacaCaccagaccggtaggtatcca	11	12	0	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91134263	G	G	91134263	3	3	1	1	0	0	0	0	1	0	0	0	11602	477	17	4	3030	4	PCDH11X	23	91134263	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	5900461	91134263	64136297	464	464											
BTK	695	broad.mit.edu	37	chrX	100615032	100615032	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatatatatatagagagagAgagttcctcctggaagattg	10	4	0	4			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100615032	G	G	100615032	1	3	1	0	1	0	0	0	0	0	0	0	1567	319	11	5		5	BTK	23	100615032	Intron	SNP	A	TCGA-05-4244-01A-01D-1105-08	9480769	100615032	54655528	465	465											
DOCK11	139818	broad.mit.edu	37	chrX	117744481	117744481	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagaggctcagctaggtcttCataagactgttggaaaactt	10	7	3	2			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117744481	A	A	117744481	1	1	1	0	1	0	0	0	0	0	0	0	4726	841	29	3		3	DOCK11	23	117744481	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	17129449	117744481	37526079	466	466											
ODZ1	10178	broad.mit.edu	37	chrX	123787312	123787312	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattattctggatatttattCatgacaaatatttttctgtc	4	5	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123787312	A	A	123787312	1	1	1	0	1	0	0	0	0	0	0	0	10929	841	29	3		3	ODZ1	23	123787312	Intron	SNP	C	TCGA-05-4244-01A-01D-1105-08	6042831	123787312	31483248	467	467											
BCORL1	63035	broad.mit.edu	37	chrX	129148736	129148736	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcctctccacagtcctgtCtaggtctcagcgcacaaccc	6	19	3	0			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129148736	G	G	129148736	3	3	1	1	0	0	0	0	1	0	0	0	1392	913	32	4	1998	4	BCORL1	23	129148736	Missense_Mutation	SNP	C	TCGA-05-4244-01A-01D-1105-08	5361424	129148736	26121824	468	468											
SLC9A6	10479	broad.mit.edu	37	chrX	135112287	135112287	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgctctttgtctttctcctTtagggttggtgttgattcag	10	7	4	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135112287	A	A	135112287	1	1	1	0	1	0	0	0	0	0	0	0	14832	1856	64	5		5	SLC9A6	23	135112287	Intron	SNP	T	TCGA-05-4244-01A-01D-1105-08	5963551	135112287	20158273	469	469											
GPR112	139378	broad.mit.edu	37	chrX	135432428	135432428	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgactactacatccactgTtcctggagcctcatttccac	5	14	1	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135432428	C	C	135432428	3	2	1	1	0	0	0	0	1	0	0	0	6694	1725	60	5	6573	5	GPR112	23	135432428	Missense_Mutation	SNP	T	TCGA-05-4244-01A-01D-1105-08	320141	135432428	19838132	470	470											
GPR112	139378	broad.mit.edu	37	chrX	135496185	135496186	+	Intron	DNP	CC	AA	AA													gctggaattacaggcgtgagCcactgcgcctggcctaaact							TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	135496186	AA	AA	135496185	1	1	1	0	1	0	0	0	0	0	0	0	6694	754	26	3		3	GPR112	23	135496185	Intron	DNP	CC	TCGA-05-4244-01A-01D-1105-08	63757	135496185	19774375	471	471											
AFF2	2334	broad.mit.edu	37	chrX	147891534	147891534	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattactgttctgtttcaagGagtttcatgatggggaatcc	10	6	3	1			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147891534	T	T	147891534	1	4	1	0	1	0	0	0	0	0	0	0	357	1189	41	3		3	AFF2	23	147891534	Intron	SNP	G	TCGA-05-4244-01A-01D-1105-08	12395349	147891534	7379026	472	472											
PLEKHN1	84069	broad.mit.edu	37	chr1	905907	905907	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctccccgcgcaggatgtcAgcgactgctacctggagcta	12	14	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	905907	T	T	905907	3	4	2	1	0	0	0	0	1	0	0	0	12178	188	7	5	351	5	PLEKHN1	1	905907	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08		905907	248344714	1	473											
UBE2J2	118424	broad.mit.edu	37	chr1	1192480	1192480	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccgggttccacgtgtcCgggtggaaatccgtgataga	15	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1192480	A	A	1192480	2	1	2	1	0	0	0	0	0	0	0	1	16987	639	23	1		1	UBE2J2	1	1192480	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	286573	1192480	248058141	2	474											
ATAD3A	55210	broad.mit.edu	37	chr1	1458249	1458249	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagacgtcccgcatcacGgtgcttgaggcgctgcggca	16	12	1	2	rs139221376	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1458249	T	T	1458249	2	4	2	1	0	0	0	0	0	0	0	1	1077	1103	39	1		1	ATAD3A	1	1458249	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	265769	1458249	247792372	3	475											
UBE4B	10277	broad.mit.edu	37	chr1	10239470	10239470	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgctttgctttgtccccGcagaccctctgatggacacc	9	14	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10239470	A	A	10239470	1	1	2	0	1	0	0	0	0	0	0	0	17009	1102	38	4		4	UBE4B	1	10239470	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	8781221	10239470	239011151	4	476											
MTOR	2475	broad.mit.edu	37	chr1	11194590	11194590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagaggaagggagctacCgttcatctgataggcatgag	13	8	3	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11194590	A	A	11194590	1	1	2	0	1	0	0	0	0	0	0	0	10048	667	23	1		1	MTOR	1	11194590	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	955120	11194590	238056031	5	477											
PTCHD2	57540	broad.mit.edu	37	chr1	11585379	11585379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttccaggtgagcctgGgctgtcgtgaagtgagccgc	14	13	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11585379	T	T	11585379	1	4	2	0	1	0	0	0	0	0	0	0	12839	1247	43	2		2	PTCHD2	1	11585379	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	390789	11585379	237665242	6	478											
LOC649330	649330	broad.mit.edu	37	chr1	12908093	12908093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagattcccaatgaacacaCgggagttcatggagtgagga	13	7	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12908093	A	A	12908093	3	1	2	1	0	0	0	0	1	0	0	0	8969	536	19	3	835	3	LOC649330	1	12908093	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1322714	12908093	236342528	7	479											
CROCC	9696	broad.mit.edu	37	chr1	17257855	17257855	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcaggtggtggggttcCggcggctggtcagcgaggtg	23	7	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17257855	T	T	17257855	3	4	2	1	0	0	0	0	1	0	0	0	3925	643	23	4	949	4	CROCC	1	17257855	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	4349762	17257855	231992766	8	480											
PAX7	5081	broad.mit.edu	37	chr1	19062359	19062359	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccggctatcagtacggCcagtacggccagagtgagtg	16	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19062359	A	A	19062359	2	1	2	1	0	0	0	0	0	0	0	1	11578	726	26	3		3	PAX7	1	19062359	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	1804504	19062359	230188262	9	481											
TAS1R2	80834	broad.mit.edu	37	chr1	19181144	19181144	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggtcgggcgagaacaCgaccacgacgcgcgctgtgc	16	13	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19181144	T	T	19181144	3	4	2	1	0	0	0	0	1	0	0	0	15682	536	19	4	1715	4	TAS1R2	1	19181144	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	118785	19181144	230069477	10	482											
USP48	84196	broad.mit.edu	37	chr1	22083110	22083110	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacataagtagagtgcctgcCgaagctccaagttgagaaac	11	9	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22083110	T	T	22083110	3	4	2	1	0	0	0	0	1	0	0	0	17206	652	23	4	2874	4	USP48	1	22083110	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2901966	22083110	227167511	11	483											
LDLRAD2	401944	broad.mit.edu	37	chr1	22150748	22150748	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcaggaccggggggtGgggtgctgggaccagggaag	24	7	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22150748	C	C	22150748	1	2	2	0	1	0	0	0	0	0	0	0	8778	1363	47	4		4	LDLRAD2	1	22150748	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	67638	22150748	227099873	12	484											
HSPG2	3339	broad.mit.edu	37	chr1	22178777	22178777	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatgctcctgagatgagaGggcaggggttgcccaccctg	15	10	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22178777	A	A	22178777	1	1	2	0	1	0	0	0	0	0	0	0	7500	1015	35	4		4	HSPG2	1	22178777	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	28029	22178777	227071844	13	485											
EPHB2	2048	broad.mit.edu	37	chr1	23111646	23111646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagactcgggctgcagacttGggcctggcctctgaagctta	13	12	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23111646	T	T	23111646	1	4	2	0	1	0	0	0	0	0	0	0	5217	1363	47	2		2	EPHB2	1	23111646	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	932869	23111646	226138975	14	486											
CNR2	1269	broad.mit.edu	37	chr1	24201556	24201556	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtagtcattggggatcagTgggaaaagctcagagcaggg	17	5	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24201556	A	A	24201556	2	1	2	1	0	0	0	0	0	0	0	1	3664	1683	59	5		5	CNR2	1	24201556	Silent	SNP	T	TCGA-05-4249-01A-01D-1105-08	1089910	24201556	225049065	15	487											
UBXN11	91544	broad.mit.edu	37	chr1	26629269	26629269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatagaagaggatacagaggCggggacagaaagacccctga	15	7	0	6			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26629269	A	A	26629269	1	1	2	0	1	0	0	0	0	0	0	0	17039	783	27	3		3	UBXN11	1	26629269	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	2427713	26629269	222621352	16	488											
PTPRU	10076	broad.mit.edu	37	chr1	29642075	29642075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaggactggagtttctcGtgaaggatcctggagccggc	14	9	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29642075	T	T	29642075	1	4	2	0	1	0	0	0	0	0	0	0	12921	1160	40	3		3	PTPRU	1	29642075	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3012806	29642075	219608546	17	489											
MATN1	4146	broad.mit.edu	37	chr1	31189047	31189047	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccagcttgtctgacacgtCcagcgtatccacgatctgac	10	14	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31189047	T	T	31189047	3	4	2	1	0	0	0	0	1	0	0	0	9425	855	30	4	590	4	MATN1	1	31189047	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1546972	31189047	218061574	18	490											
CSMD2	114784	broad.mit.edu	37	chr1	34191213	34191213	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgacataaagccctgcctGacccagggcttccgaataac	8	13	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34191213	T	T	34191213	1	4	2	0	1	0	0	0	0	0	0	0	3979	1305	45	3		3	CSMD2	1	34191213	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3002166	34191213	215059408	19	491											
ZMYM1	79830	broad.mit.edu	37	chr1	35579110	35579110	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaaagcttataattgaaaAtattttatttcttggaaagc	5	5	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35579110	T	T	35579110	3	4	2	1	0	0	0	0	1	0	0	0	17825	101	4	5	1713	5	ZMYM1	1	35579110	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	1387897	35579110	213671511	20	492											
C1orf216	127703	broad.mit.edu	37	chr1	36181806	36181806	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caattctcgttagcatccttGgcacttgccatgaagttgga	9	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36181806	C	C	36181806	2	2	2	1	0	0	0	0	0	0	0	1	2053	1335	47	4		4	C1orf216	1	36181806	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	602696	36181806	213068815	21	493											
ATP6V0B	533	broad.mit.edu	37	chr1	44441472	44441472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctccctcactgctgcagGagtctgctacaccatttttg	7	13	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44441472	T	T	44441472	3	4	2	1	0	0	0	0	1	0	0	0	1175	1188	41	3	74	3	ATP6V0B	1	44441472	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	8259666	44441472	204809149	22	494											
ZSWIM5	57643	broad.mit.edu	37	chr1	45508890	45508890	+	Splice_Site	DEL	C	-	-													ttagaggagggctagacttaCcaagccacagtggctggcct							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45508890	-	-	45508890	8	5	2	1	0	1	0	1	0	0	1	0	18373	521	18	0	1983	0	ZSWIM5	1	45508890	Splice_Site	DEL	C	TCGA-05-4249-01A-01D-1105-08	1067418	45508890	203741731	23	495											
ZYG11B	79699	broad.mit.edu	37	chr1	53250482	53250482	+	Intron	DEL	A	-	-													ttactatagaccaacaaaatAattctgctctgtgaagaggg							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53250482	-	-	53250482	6	5	2	0	1	1	0	1	0	0	0	0	18382	377	13	0		0	ZYG11B	1	53250482	Intron	DEL	A	TCGA-05-4249-01A-01D-1105-08	7741592	53250482	196000139	24	496											
DMRTB1	63948	broad.mit.edu	37	chr1	53930233	53930233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggagccccccacttcagGggtgagagctatgtttggtc	13	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53930233	T	T	53930233	1	4	2	0	1	0	0	0	0	0	0	0	4630	1247	43	2		2	DMRTB1	1	53930233	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	679751	53930233	195320388	25	497											
C8A	731	broad.mit.edu	37	chr1	57351892	57351892	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcaacacagacaccaggtCatggtttgaagttttctaag	9	8	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57351892	A	A	57351892	1	1	2	0	1	0	0	0	0	0	0	0	2441	841	29	3		3	C8A	1	57351892	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3421659	57351892	191898729	26	498											
JAK1	3716	broad.mit.edu	37	chr1	65325708	65325708	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggtcaactggcctgaccTaaacaatgatgacatgcccc	8	13	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65325708	A	A	65325708	1	1	2	0	1	0	0	0	0	0	0	0	8007	1537	53	5		5	JAK1	1	65325708	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	7973816	65325708	183924913	27	499											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67241985	67241985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaaacattttcctgtgGtcaccgtcaatcatattttg	5	12	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67241985	T	T	67241985	3	4	2	1	0	0	0	0	1	0	0	0	15841	1261	44	3	245	3	TCTEX1D1	1	67241985	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1916277	67241985	182008636	28	500											
WDR78	79819	broad.mit.edu	37	chr1	67299654	67299654	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacgtaacaagaaaaataTaacttgatttttcttttacc	4	7	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67299654	C	C	67299654	1	2	2	0	1	0	0	0	0	0	0	0	17455	1421	49	5		5	WDR78	1	67299654	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	57669	67299654	181950967	29	501											
LHX8	431707	broad.mit.edu	37	chr1	75602950	75602950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaataccttctcaaggtaGgatagggcctcgggtgcgag	13	9	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75602950	T	T	75602950	1	4	2	0	1	0	0	0	0	0	0	0	8848	1015	35	2		2	LHX8	1	75602950	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	8303296	75602950	173647671	30	502											
LPHN2	23266	broad.mit.edu	37	chr1	82409048	82409048	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggaggaaagactgatatcGacctagcagttgatgaaaat	13	5	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82409048	C	C	82409048	3	2	2	1	0	0	0	0	1	0	0	0	9003	1058	37	4	807	4	LPHN2	1	82409048	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	6806098	82409048	166841573	31	503											
LRRC8C	84230	broad.mit.edu	37	chr1	90152311	90152311	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtatttgtaatcatagcaGagaacctgaaacacctattt	6	7	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90152311	C	C	90152311	1	2	2	0	1	0	0	0	0	0	0	0	9110	957	33	4		4	LRRC8C	1	90152311	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	7743263	90152311	159098310	32	504											
RPAP2	79871	broad.mit.edu	37	chr1	92789591	92789591	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acttacttaaagttttgaagGagactttgattgagtggaag	11	3	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92789591	C	C	92789591	3	2	2	1	0	0	0	0	1	0	0	0	13653	1175	41	4	1144	4	RPAP2	1	92789591	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2637280	92789591	156461030	33	505											
RPAP2	79871	broad.mit.edu	37	chr1	92846257	92846257	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatcatttcatggatatgcAtttagtatttttggttgttt	7	3	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92846257	G	G	92846257	1	3	2	0	1	0	0	0	0	0	0	0	13653	232	8	5		5	RPAP2	1	92846257	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	56666	92846257	156404364	34	506											
VCAM1	7412	broad.mit.edu	37	chr1	101185437	101185437	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcctgggaagatggtcgtGatccttggagcctcaaatat	12	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101185437	T	T	101185437	2	4	2	1	0	0	0	0	0	0	0	1	17264	1277	45	3		3	VCAM1	1	101185437	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	8339180	101185437	148065184	35	507											
COL11A1	1301	broad.mit.edu	37	chr1	103491751	103491751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaggacaccacatacaCaggcactgctttgtttttac	7	12	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103491751	A	A	103491751	1	1	2	0	1	0	0	0	0	0	0	0	3699	493	17	3		3	COL11A1	1	103491751	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	2306314	103491751	145758870	36	508											
SEC22B	9554	broad.mit.edu	37	chr1	145115850	145115850	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagcagtagctgtatttttCatcatgttaatagtgtatgt	9	5	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145115850	A	A	145115850	3	1	2	1	0	0	0	0	1	0	0	0	14102	825	29	3	627	3	SEC22B	1	145115850	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	41624099	145115850	104134771	37	509											
FLG	2312	broad.mit.edu	37	chr1	152277110	152277110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctggagctgtctcgtgCctgctcgtggtgggatcctt	15	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152277110	A	A	152277110	3	1	2	1	0	0	0	0	1	0	0	0	5979	739	26	3	1937	3	FLG	1	152277110	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	7161260	152277110	96973511	38	510											
KPRP	448834	broad.mit.edu	37	chr1	152733141	152733141	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctcccagagctgtggcccGcagccctcctggggcgcctc	13	19	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152733141	A	A	152733141	2	1	2	1	0	0	0	0	0	0	0	1	8507	1074	38	4		4	KPRP	1	152733141	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	456031	152733141	96517480	39	511											
TPM3	7170	broad.mit.edu	37	chr1	154166050	154166050	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacataggttgcagctactgGacttttgggggggtcctgga	15	8	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154166050	A	A	154166050	1	1	2	0	1	0	0	0	0	0	0	0	16531	1189	41	4		4	TPM3	1	154166050	5'Flank	SNP	G	TCGA-05-4249-01A-01D-1105-08	1432909	154166050	95084571	40	512											
ATP8B2	57198	broad.mit.edu	37	chr1	154304212	154304212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttctttgtgagaaaaGgatgaatctttcctgattta	7	7	3	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154304212	T	T	154304212	1	4	2	0	1	0	0	0	0	0	0	0	1199	1015	35	2		2	ATP8B2	1	154304212	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	138162	154304212	94946409	41	513											
ATP8B2	57198	broad.mit.edu	37	chr1	154317977	154317977	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaactttgctttcaccAtggtccacttctggtttggc	7	11	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154317977	T	T	154317977	3	4	2	1	0	0	0	0	1	0	0	0	1199	217	8	5	2969	5	ATP8B2	1	154317977	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	13765	154317977	94932644	42	514											
DCST2	127579	broad.mit.edu	37	chr1	155002563	155002563	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcagggccctcacccgGtgggatgtagcgcctggcct	14	15	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155002563	A	A	155002563	3	1	2	1	0	0	0	0	1	0	0	0	4336	1261	44	4	1183	4	DCST2	1	155002563	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	684586	155002563	94248058	43	515											
GON4L	54856	broad.mit.edu	37	chr1	155764977	155764977	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcagatgctcattaacTctgttctcaaacttctaaga	5	9	5	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155764977	A	A	155764977	1	1	2	0	1	0	0	0	0	0	0	0	6636	1566	54	5		5	GON4L	1	155764977	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	762414	155764977	93485644	44	516											
INSRR	3645	broad.mit.edu	37	chr1	156810734	156810734	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagtcaggctctgcatcGgtggtaggcagggagccccg	18	10	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156810734	T	T	156810734	2	4	2	1	0	0	0	0	0	0	0	1	7844	1103	39	1		1	INSRR	1	156810734	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	1045757	156810734	92439887	45	517											
FCRL2	79368	broad.mit.edu	37	chr1	157738300	157738300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcactctctttcacagctgGgatctccagctctgctgaca	7	14	5	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157738300	T	T	157738300	3	4	2	1	0	0	0	0	1	0	0	0	5852	1232	43	2	771	2	FCRL2	1	157738300	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	927566	157738300	91512321	46	518											
SPTA1	6708	broad.mit.edu	37	chr1	158615031	158615031	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgtttttcccaagccttctCcaaatcatctctctctagct	4	15	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158615031	A	A	158615031	4	1	2	1	0	0	0	0	0	1	0	0	15234	864	30	3	3214	3	SPTA1	1	158615031	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	876731	158615031	90635590	47	519											
CADM3	57863	broad.mit.edu	37	chr1	159162339	159162339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaggtgccagtaaaatcCtagctttccattctcttgat	7	9	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159162339	A	A	159162339	1	1	2	0	1	0	0	0	0	0	0	0	2594	696	24	2		2	CADM3	1	159162339	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	547308	159162339	90088282	48	520											
OR10J3	441911	broad.mit.edu	37	chr1	159284169	159284169	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtggcacagctttgggtgGcaatgggctgatgaggattc	17	6	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159284169	A	A	159284169	3	1	2	1	0	0	0	0	1	0	0	0	11005	1203	42	4	710	4	OR10J3	1	159284169	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	121830	159284169	89966452	49	521											
OR10J1	26476	broad.mit.edu	37	chr1	159410018	159410018	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcgtatccaacttgtccTgggggcctgcagcattgggc	14	12	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159410018	A	A	159410018	3	1	2	1	0	0	0	0	1	0	0	0	11004	1580	55	5	472	5	OR10J1	1	159410018	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	125849	159410018	89840603	50	522											
TAGLN2	8407	broad.mit.edu	37	chr1	159888698	159888698	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgccctcttgcagctggttAtccgagaagttccgaggatt	11	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159888698	G	G	159888698	2	3	2	1	0	0	0	0	0	0	0	1	15658	446	16	5		5	TAGLN2	1	159888698	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	478680	159888698	89361923	51	523											
NOS1AP	9722	broad.mit.edu	37	chr1	162313767	162313767	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacagctcaggagacccagGtaggcactgcggcttctgtg	13	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162313767	C	C	162313767	5	2	2	1	0	0	0	0	0	0	1	0	10637	1275	44	4	618	4	NOS1AP	1	162313767	Splice_Site	SNP	G	TCGA-05-4249-01A-01D-1105-08	2425069	162313767	86936854	52	524											
UAP1	6675	broad.mit.edu	37	chr1	162567548	162567548	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaagtaacatgggaagcAaagtctttaacacatacttg	9	7	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162567548	T	T	162567548	1	4	2	0	1	0	0	0	0	0	0	0	16951	145	5	5		5	UAP1	1	162567548	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	253781	162567548	86683073	53	525											
MAEL	84944	broad.mit.edu	37	chr1	166959144	166959144	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctggatgagtgaatgagtGaatgtcaagggtggactgct	17	4	1	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166959144	A	A	166959144	1	1	2	0	1	0	0	0	0	0	0	0	9242	1305	45	4		4	MAEL	1	166959144	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	4391596	166959144	82291477	54	526											
METTL13	51603	broad.mit.edu	37	chr1	171755174	171755174	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaagctgagctgtcggctAgagtcatggagctggcccca	13	12	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171755174	G	G	171755174	3	3	2	1	0	0	0	0	1	0	0	0	9590	412	15	5	1079	5	METTL13	1	171755174	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	4796030	171755174	77495447	55	527											
TNN	63923	broad.mit.edu	37	chr1	175097113	175097113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctgttgacacctagggtGctagtgggtgataaactgag	14	7	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175097113	T	T	175097113	1	4	2	0	1	0	0	0	0	0	0	0	16446	1334	46	3		3	TNN	1	175097113	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3341939	175097113	74153508	56	528											
TNR	7143	broad.mit.edu	37	chr1	175324739	175324739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttgtctggtgacttcaCtggctgtcaggtttgccgga	12	10	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175324739	A	A	175324739	3	1	2	1	0	0	0	0	1	0	0	0	16461	565	20	3	955	3	TNR	1	175324739	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	227626	175324739	73925882	57	529											
TNR	7143	broad.mit.edu	37	chr1	175372653	175372653	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagcgggcagtagggctccGagcaattcttgccaaaccag	12	13	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372653	A	A	175372653	3	1	2	1	0	0	0	0	1	0	0	0	16461	1059	37	4	3557	4	TNR	1	175372653	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	47914	175372653	73877968	58	530											
TNR	7143	broad.mit.edu	37	chr1	175375921	175375921	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttgtgggaatctgcaacGgaaaccaaggaaagagacaa	13	6	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175375921	A	A	175375921	1	1	2	0	1	0	0	0	0	0	0	0	16461	1131	39	4		4	TNR	1	175375921	5'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	3268	175375921	73874700	59	531											
FAM5B	57795	broad.mit.edu	37	chr1	177226496	177226496	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcgacggctgcaccatatCcagatagccacgggggccat	12	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177226496	A	A	177226496	2	1	2	1	0	0	0	0	0	0	0	1	5644	845	30	3		3	FAM5B	1	177226496	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	1850575	177226496	72024125	60	532											
C1orf49	84066	broad.mit.edu	37	chr1	178489756	178489756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggttatctccttgtcatGctgcaaaatgtctccccaac	6	13	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178489756	T	T	178489756	1	4	2	0	1	0	0	0	0	0	0	0	2063	1334	46	3		3	C1orf49	1	178489756	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1263260	178489756	70760865	61	533											
HMCN1	83872	broad.mit.edu	37	chr1	186086738	186086738	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcccaggggagatggctAtagaattctgtcctcaggta	12	9	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186086738	G	G	186086738	3	3	2	1	0	0	0	0	1	0	0	0	7287	449	16	5	12137	5	HMCN1	1	186086738	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	7596982	186086738	63163883	62	534											
CRB1	23418	broad.mit.edu	37	chr1	197411255	197411255	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catttcacaaccaatgtattCaacagggacctgggtttctg	8	10	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197411255	T	T	197411255	1	4	2	0	1	0	0	0	0	0	0	0	3880	841	29	4		4	CRB1	1	197411255	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	11324517	197411255	51839366	63	535											
PTPRC	5788	broad.mit.edu	37	chr1	198721700	198721700	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacttcactccagttaatGctctcttcaattctgatttt	4	10	4	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198721700	A	A	198721700	1	1	2	0	1	0	0	0	0	0	0	0	12905	1334	46	4		4	PTPRC	1	198721700	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1310445	198721700	50528921	64	536											
CHI3L1	1116	broad.mit.edu	37	chr1	203148404	203148404	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccctacctctctgcccaCcagggctgagctcaaatctg	7	17	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203148404	A	A	203148404	1	1	2	0	1	0	0	0	0	0	0	0	3371	522	18	3		3	CHI3L1	1	203148404	3'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	4426704	203148404	46102217	65	537											
ATP2B4	493	broad.mit.edu	37	chr1	203689890	203689890	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagggggtgtgggtgggcTgagacgggagggatgagtca	23	3	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203689890	C	C	203689890	1	2	2	0	1	0	0	0	0	0	0	0	1146	1595	55	5		5	ATP2B4	1	203689890	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	541486	203689890	45560731	66	538											
LRRN2	10446	broad.mit.edu	37	chr1	204588748	204588748	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgggtcagctggttctcctCtaggtgcaggctcagcagct	13	13	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204588748	G	G	204588748	3	3	2	1	0	0	0	0	1	0	0	0	9122	922	32	4	1772	4	LRRN2	1	204588748	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	898858	204588748	44661873	67	539											
NFASC	23114	broad.mit.edu	37	chr1	204917937	204917937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtcccttgtcaggcttGctaaccagggtgagacccca	13	12	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204917937	T	T	204917937	1	4	2	0	1	0	0	0	0	0	0	0	10454	1334	46	3		3	NFASC	1	204917937	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	329189	204917937	44332684	68	540											
CENPF	1063	broad.mit.edu	37	chr1	214791961	214791961	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacaagctgcgcagtctgcAgatgtctctctgaatccatg	9	12	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214791961	T	T	214791961	2	4	2	1	0	0	0	0	0	0	0	1	3261	175	7	5		5	CENPF	1	214791961	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	9874024	214791961	34458660	69	541											
USH2A	7399	broad.mit.edu	37	chr1	215848813	215848813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttcatctgtccacagaGgctgaggcgccgagtgtgca	15	11	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215848813	T	T	215848813	3	4	2	1	0	0	0	0	1	0	0	0	17162	1000	35	2	3208	2	USH2A	1	215848813	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1056852	215848813	33401808	70	542											
EPRS	2058	broad.mit.edu	37	chr1	220178627	220178627	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatcacatatgaagaatcCtcttctctggagttgtataa	7	7	3	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220178627	T	T	220178627	3	4	2	1	0	0	0	0	1	0	0	0	5233	690	24	4	2580	4	EPRS	1	220178627	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	4329814	220178627	29071994	71	543											
TAF1A	9015	broad.mit.edu	37	chr1	222761891	222761891	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaggcccttttaattcttcActgaaatcactcatacctat	3	12	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222761891	T	T	222761891	3	4	2	1	0	0	0	0	1	0	0	0	15638	156	6	5	1377	5	TAF1A	1	222761891	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	2583264	222761891	26488730	72	544											
C1orf55	163859	broad.mit.edu	37	chr1	226183030	226183030	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatgctgcactgtgtcacTggtgttaatgagtgctccat	10	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226183030	C	C	226183030	3	2	2	1	0	0	0	0	1	0	0	0	2069	1580	55	5	1204	5	C1orf55	1	226183030	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	3421139	226183030	23067591	73	545											
PRSS38	339501	broad.mit.edu	37	chr1	228005254	228005254	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagggaagaaaatgctctgCcagctaagggggtccaggtg	15	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228005254	G	G	228005254	1	3	2	0	1	0	0	0	0	0	0	0	12733	754	26	4		4	PRSS38	1	228005254	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1822224	228005254	21245367	74	546											
ARF1	375	broad.mit.edu	37	chr1	228285785	228285785	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaacgtgcggctcgtgGtgtgagtgccagaagctgcc	16	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228285785	T	T	228285785	1	4	2	0	1	0	0	0	0	0	0	0	846	1276	44	3		3	ARF1	1	228285785	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	280531	228285785	20964836	75	547											
OBSCN	84033	broad.mit.edu	37	chr1	228494002	228494002	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagctgggaggagcccaggcCctcatctgctggcctggaga	16	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228494002	G	G	228494002	1	3	2	0	1	0	0	0	0	0	0	0	10907	638	22	4		4	OBSCN	1	228494002	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	208217	228494002	20756619	76	548											
OBSCN	84033	broad.mit.edu	37	chr1	228558786	228558786	+	Frame_Shift_Del	DEL	C	-	-													atccctgagctgctgcggggCccacccgacagcccctccct							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	228558786	-	-	228558786	7	5	2	1	0	1	0	1	0	0	0	0	10907	726	26	0	21887	0	OBSCN	1	228558786	Frame_Shift_Del	DEL	C	TCGA-05-4249-01A-01D-1105-08	64784	228558786	20691835	77	549											
SIPA1L2	57568	broad.mit.edu	37	chr1	232619633	232619633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaaagctggtcccgccGtctcattgttatacatctct	6	13	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232619633	A	A	232619633	3	1	2	1	0	0	0	0	1	0	0	0	14443	1145	40	4	3354	4	SIPA1L2	1	232619633	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	4060847	232619633	16630988	78	550											
TARBP1	6894	broad.mit.edu	37	chr1	234595080	234595080	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgaataacatccctgacatCgaaacacaaaaaatgcagtt	5	9	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234595080	A	A	234595080	1	1	2	0	1	0	0	0	0	0	0	0	15674	899	31	3		3	TARBP1	1	234595080	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1975447	234595080	14655541	79	551											
MTR	4548	broad.mit.edu	37	chr1	236969511	236969511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcactagtattgcccaagCtgactatggccttgaacact	8	12	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236969511	A	A	236969511	3	1	2	1	0	0	0	0	1	0	0	0	10052	797	28	3	327	3	MTR	1	236969511	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2374431	236969511	12281110	80	552											
RYR2	6262	broad.mit.edu	37	chr1	237663945	237663945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcaaatcttttgactttGgctctgaagctgattctctg	7	8	4	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237663945	T	T	237663945	1	4	2	0	1	0	0	0	0	0	0	0	13880	1363	47	2		2	RYR2	1	237663945	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	694434	237663945	11586676	81	553											
RYR2	6262	broad.mit.edu	37	chr1	237713886	237713886	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgccttgttccctacactCttctggatgaccgaaccaag	7	15	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237713886	T	T	237713886	3	4	2	1	0	0	0	0	1	0	0	0	13880	913	32	4	3215	4	RYR2	1	237713886	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	49941	237713886	11536735	82	554											
OR2L13	284521	broad.mit.edu	37	chr1	248247347	248247347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtcagcacaagccaaaCgcaccagcacgggggcctcg	12	14	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247347	A	A	248247347	1	1	2	0	1	0	0	0	0	0	0	0	11100	551	19	3		3	OR2L13	1	248247347	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	10533461	248247347	1003274	83	555											
OR2T33	391195	broad.mit.edu	37	chr1	248436566	248436566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtcagcacaagccaaaCgcaccagcacgggggtctcg	12	13	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436566	A	A	248436566	3	1	2	1	0	0	0	0	1	0	0	0	11118	536	19	3	414	3	OR2T33	1	248436566	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	189219	248436566	814055	84	556											
TPO	7173	broad.mit.edu	37	chr2	1426848	1426848	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtctcgtgtctctagcgtCttggaggaaagcaagcgcct	13	10	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1426848	A	A	1426848	2	1	2	1	0	0	0	0	0	0	0	1	16534	900	32	3		3	TPO	2	1426848	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08		1426848	241772525	85	557											
TPO	7173	broad.mit.edu	37	chr2	1488719	1488719	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaagttctagggtacatgTgcacaacgtgcaggtttgtt	11	6	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1488719	C	C	1488719	1	2	2	0	1	0	0	0	0	0	0	0	16534	1711	59	5		5	TPO	2	1488719	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	61871	1488719	241710654	86	558											
PUM2	23369	broad.mit.edu	37	chr2	20457962	20457962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatgtaataatttaaaaatTgaataaaataatacaaaaat	2	2	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20457962	A	A	20457962	1	1	2	0	1	0	0	0	0	0	0	0	12934	1827	63	5		5	PUM2	2	20457962	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	18969243	20457962	222741411	87	559											
APOB	338	broad.mit.edu	37	chr2	21233375	21233375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaattcagataatcattaGcttgctgtgggagttttccc	9	7	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21233375	T	T	21233375	3	4	2	1	0	0	0	0	1	0	0	0	787	971	34	3	7342	3	APOB	2	21233375	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	775413	21233375	221965998	88	560											
EIF2B4	8890	broad.mit.edu	37	chr2	27590037	27590037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcttctcttgcacatacCgatcaatggctgctcgaagt	7	12	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27590037	A	A	27590037	3	1	2	1	0	0	0	0	1	0	0	0	5043	652	23	1	670	1	EIF2B4	2	27590037	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6356662	27590037	215609336	89	561											
SOS1	6654	broad.mit.edu	37	chr2	39281974	39281974	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccatcaatacctatacagtCagagatataaaaaagtataa	4	7	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39281974	A	A	39281974	1	1	2	0	1	0	0	0	0	0	0	0	15050	841	29	3		3	SOS1	2	39281974	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	11691937	39281974	203917399	90	562											
NRXN1	9378	broad.mit.edu	37	chr2	50318616	50318616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccaacattaaacttaactCcaatttttccctggtgctgt	4	12	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50318616	A	A	50318616	3	1	2	1	0	0	0	0	1	0	0	0	10760	855	30	3	980	3	NRXN1	2	50318616	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	11036642	50318616	192880757	91	563											
UGP2	7360	broad.mit.edu	37	chr2	64069455	64069455	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgagataacatttgcgaAacccttttcgttgaattgtc	7	7	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64069455	T	T	64069455	1	4	2	0	1	0	0	0	0	0	0	0	17069	29	1	5		5	UGP2	2	64069455	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	13750839	64069455	179129918	92	564											
AFTPH	54812	broad.mit.edu	37	chr2	64780685	64780685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgcctgtctgatttgtgGgttggttacatttttcacaa	9	6	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64780685	T	T	64780685	1	4	2	0	1	0	0	0	0	0	0	0	364	1247	43	2		2	AFTPH	2	64780685	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	711230	64780685	178418688	93	565											
PPP3R1	5534	broad.mit.edu	37	chr2	68413773	68413773	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctttatccatgtcatagaTacggaaagcaactaaaaaaa	5	7	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68413773	C	C	68413773	3	2	2	1	0	0	0	0	1	0	0	0	12501	1406	49	5	228	5	PPP3R1	2	68413773	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	3633088	68413773	174785600	94	566											
PLEK	5341	broad.mit.edu	37	chr2	68607985	68607985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggaggccagaaatttgCcaggaaatctaccaggaggt	13	7	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68607985	A	A	68607985	3	1	2	1	0	0	0	0	1	0	0	0	12148	739	26	3	339	3	PLEK	2	68607985	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	194212	68607985	174591388	95	567											
PCBP1	5093	broad.mit.edu	37	chr2	70314810	70314810	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctacacctcccctcccccCgccagccgccaaagacttga	6	22	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70314810	T	T	70314810	1	4	2	0	1	0	0	0	0	0	0	0	11594	667	23	4		4	PCBP1	2	70314810	5'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	1706825	70314810	172884563	96	568											
LRRTM4	80059	broad.mit.edu	37	chr2	77745546	77745546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgtagtccacataataCtcctgtaaaggggaattcat	9	8	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745546	A	A	77745546	3	1	2	1	0	0	0	0	1	0	0	0	9129	564	20	3	337	3	LRRTM4	2	77745546	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	7430736	77745546	165453827	97	569											
REG3G	130120	broad.mit.edu	37	chr2	79253767	79253767	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctccccaagggcagacctaGatattccccaaggtcatctc	7	16	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79253767	T	T	79253767	1	4	2	0	1	0	0	0	0	0	0	0	13321	957	33	3		3	REG3G	2	79253767	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1508221	79253767	163945606	98	570											
REG3G	130120	broad.mit.edu	37	chr2	79254104	79254104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcccacctaccttttccCtgccctccctcagtgggtct	5	20	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79254104	A	A	79254104	1	1	2	0	1	0	0	0	0	0	0	0	13321	696	24	2		2	REG3G	2	79254104	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	337	79254104	163945269	99	571											
REG3A	5068	broad.mit.edu	37	chr2	79384953	79384953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctattccagatgctgcCggtgagtaggaaactcttcc	10	11	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384953	A	A	79384953	1	1	2	0	1	0	0	0	0	0	0	0	13320	667	23	1		1	REG3A	2	79384953	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	130849	79384953	163814420	100	572											
CNGA3	1261	broad.mit.edu	37	chr2	99008299	99008299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagaaacacacgcacagCcatccatctcccacatggct	5	18	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99008299	A	A	99008299	1	1	2	0	1	0	0	0	0	0	0	0	3630	754	26	3		3	CNGA3	2	99008299	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	19623346	99008299	144191074	101	573											
SLC9A4	389015	broad.mit.edu	37	chr2	103095664	103095664	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatctccgccgtggaccCagtggccgtgctagccgtgt	13	15	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103095664	T	T	103095664	3	4	2	1	0	0	0	0	1	0	0	0	14830	594	21	4	629	4	SLC9A4	2	103095664	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	4087365	103095664	140103709	102	574											
SULT1C3	442038	broad.mit.edu	37	chr2	108881745	108881745	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggcccaaaatgaagaaTttgacaaggactaccagaag	10	8	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108881745	C	C	108881745	3	2	2	1	0	0	0	0	1	0	0	0	15496	1493	52	5	879	5	SULT1C3	2	108881745	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	5786081	108881745	134317628	103	575											
MERTK	10461	broad.mit.edu	37	chr2	112751738	112751738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggcctcggacgtgggcgGgatggcttccctcagaagga	16	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112751738	T	T	112751738	1	4	2	0	1	0	0	0	0	0	0	0	9572	1247	43	2		2	MERTK	2	112751738	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3869993	112751738	130447635	104	576											
TMEM87B	84910	broad.mit.edu	37	chr2	112856185	112856185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttaggattggatggaacGctgggttgacgatgcatttt	13	5	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112856185	T	T	112856185	3	4	2	1	0	0	0	0	1	0	0	0	16334	1087	38	3	1340	3	TMEM87B	2	112856185	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	104447	112856185	130343188	105	577											
IL1F5	26525	broad.mit.edu	37	chr2	113819953	113819953	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttgatggcagctttgcctCctccctaaggatcctgccca	9	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113819953	T	T	113819953	1	4	2	0	1	0	0	0	0	0	0	0	7723	870	30	4		4	IL1F5	2	113819953	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	963768	113819953	129379420	106	578											
INSIG2	51141	broad.mit.edu	37	chr2	118860657	118860657	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaataacttttttttttgTttttttttttttaagaatct	3	2	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118860657	G	G	118860657	1	3	2	0	1	0	0	0	0	0	0	0	7836	1740	60	5		5	INSIG2	2	118860657	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	5040704	118860657	124338716	107	579											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521483	125521483	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccctagtcttgaaaattatCcacatgtccagtgctttccc	6	13	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521483	A	A	125521483	1	1	2	0	1	0	0	0	0	0	0	0	3682	870	30	3		3	CNTNAP5	2	125521483	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	6660826	125521483	117677890	108	580											
MAP3K2	10746	broad.mit.edu	37	chr2	128088066	128088066	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccaagtcatcttgagtagTtaatggaattaccaactaaa	7	7	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128088066	C	C	128088066	3	2	2	1	0	0	0	0	1	0	0	0	9342	1725	60	5	1627	5	MAP3K2	2	128088066	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	2566583	128088066	115111307	109	581											
LRP1B	53353	broad.mit.edu	37	chr2	141812830	141812830	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacatgcatggcttctgacTacaacaaataaaaaacagca	5	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141812830	A	A	141812830	5	1	2	1	0	0	0	0	0	0	1	0	9042	1536	53	5	12720	5	LRP1B	2	141812830	Splice_Site	SNP	T	TCGA-05-4249-01A-01D-1105-08	13724764	141812830	101386543	110	582											
NEB	4703	broad.mit.edu	37	chr2	152522052	152522052	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtcagatttgtacagaTtctttacaatgagaaaaaaa	7	4	2	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152522052	A	A	152522052	3	1	2	1	0	0	0	0	1	0	0	0	10397	1507	52	5	21217	5	NEB	2	152522052	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	10709222	152522052	90677321	111	583											
MARCH7	64844	broad.mit.edu	37	chr2	160585777	160585777	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttaaaaaatgtgttagctgGatctgaggcatcctgtaatc	9	6	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160585777	T	T	160585777	1	4	2	0	1	0	0	0	0	0	0	0	9398	1189	41	3		3	MARCH7	2	160585777	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	8063725	160585777	82613596	112	584											
PLA2R1	22925	broad.mit.edu	37	chr2	160806345	160806345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggctggcagcatcacccaGtgttatctgagcatgctaca	10	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160806345	T	T	160806345	1	4	2	0	1	0	0	0	0	0	0	0	12105	1044	36	3		3	PLA2R1	2	160806345	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	220568	160806345	82393028	113	585											
SCN3A	6328	broad.mit.edu	37	chr2	165997321	165997321	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gactaacgttactgttgcgtCgctctccatgtctgtgcggc	11	12	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165997321	T	T	165997321	3	4	2	1	0	0	0	0	1	0	0	0	14031	884	31	4	4207	4	SCN3A	2	165997321	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	5190976	165997321	77202052	114	586											
SCN9A	6335	broad.mit.edu	37	chr2	167142803	167142803	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aataagacatttttctctagCattctgcctcgggtgataca	7	9	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167142803	G	G	167142803	1	3	2	0	1	0	0	0	0	0	0	0	14038	725	25	4		4	SCN9A	2	167142803	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1145482	167142803	76056570	115	587											
DLX2	1746	broad.mit.edu	37	chr2	172966464	172966464	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggcgggggggacttggctTgagcaaagaggtgggtgcac	20	8	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172966464	A	A	172966464	1	1	2	0	1	0	0	0	0	0	0	0	4611	1827	63	5		5	DLX2	2	172966464	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	5823661	172966464	70232909	116	588											
CDCA7	83879	broad.mit.edu	37	chr2	174228252	174228252	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcgactcattacttaaatCtgttccatcacgcaaaagtt	5	10	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174228252	G	G	174228252	1	3	2	0	1	0	0	0	0	0	0	0	3120	928	32	4		4	CDCA7	2	174228252	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1261788	174228252	68971121	117	589											
OLA1	29789	broad.mit.edu	37	chr2	175111467	175111467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttggcaatccaacaataCcaattttcagtgaggttcca	6	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175111467	A	A	175111467	3	1	2	1	0	0	0	0	1	0	0	0	10945	507	18	3	1153	3	OLA1	2	175111467	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	883215	175111467	68087906	118	590											
GPR155	151556	broad.mit.edu	37	chr2	175300882	175300882	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagggtggggatgaatgctCaatttctttatatctttcct	10	6	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175300882	T	T	175300882	3	4	2	1	0	0	0	0	1	0	0	0	6725	835	29	4	41	4	GPR155	2	175300882	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	189415	175300882	67898491	119	591											
TTN	7273	broad.mit.edu	37	chr2	179415733	179415733	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataatgccagaagactgtgAgggcgggcttatagttccaa	12	7	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179415733	T	T	179415733	3	4	2	1	0	0	0	0	1	0	0	0	16861	304	11	5	16562	5	TTN	2	179415733	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	4114851	179415733	63783640	120	592											
TTN	7273	broad.mit.edu	37	chr2	179422644	179422644	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcagttatatcactaataAcaacagggccagttggagga	9	8	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179422644	T	T	179422644	3	4	2	1	0	0	0	0	1	0	0	0	16861	43	2	5	20682	5	TTN	2	179422644	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	6911	179422644	63776729	121	593											
TTN	7273	broad.mit.edu	37	chr2	179474458	179474458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtagcccgagaaggttcaCtaatacccgcggcgttctct	11	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179474458	A	A	179474458	3	1	2	1	0	0	0	0	1	0	0	0	16861	565	20	3	56365	3	TTN	2	179474458	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	51814	179474458	63724915	122	594											
TTN	7273	broad.mit.edu	37	chr2	179610734	179610734	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccatggtgaggaatccccGacagatagcctctcctacac	8	15	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179610734	T	T	179610734	2	4	2	1	0	0	0	0	0	0	0	1	16861	1057	37	3		3	TTN	2	179610734	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	136276	179610734	63588639	123	595											
NCKAP1	10787	broad.mit.edu	37	chr2	183791692	183791692	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggttcatcggttacttAttttaggtatgtttcaactt	7	5	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183791692	G	G	183791692	1	3	2	0	1	0	0	0	0	0	0	0	10316	464	16	5		5	NCKAP1	2	183791692	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	4180958	183791692	59407681	124	596											
MARS2	92935	broad.mit.edu	37	chr2	198571112	198571112	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccttcctgttaggggccgGcatgagcccgccacagcgca	13	15	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198571112	A	A	198571112	3	1	2	1	0	0	0	0	1	0	0	0	9409	1203	42	4	985	4	MARS2	2	198571112	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	14779420	198571112	44628261	125	597											
CLK1	1195	broad.mit.edu	37	chr2	201726365	201726365	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaggtacttattttaagtGatactagttttgtctagtaa	7	4	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201726365	T	T	201726365	1	4	2	0	1	0	0	0	0	0	0	0	3568	1305	45	3		3	CLK1	2	201726365	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3155253	201726365	41473008	126	598											
FAM126B	285172	broad.mit.edu	37	chr2	201931713	201931713	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagagttcaccatgaagaAgatagaagacaacatatttg	8	7	1	6			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201931713	C	C	201931713	1	2	2	0	1	0	0	0	0	0	0	0	5476	87	3	5		5	FAM126B	2	201931713	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	205348	201931713	41267660	127	599											
ALS2CR11	151254	broad.mit.edu	37	chr2	202352274	202352274	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgatattctgactgctGgcctcacatatcattctgag	9	9	4	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202352274	T	T	202352274	1	4	2	0	1	0	0	0	0	0	0	0	552	1363	47	2		2	ALS2CR11	2	202352274	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	420561	202352274	40847099	128	600											
ADAM23	8745	broad.mit.edu	37	chr2	207437900	207437900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgatattactgaatattGtactggagactctggtcagg	12	5	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207437900	T	T	207437900	3	4	2	1	0	0	0	0	1	0	0	0	245	1377	48	3	1788	3	ADAM23	2	207437900	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	5085626	207437900	35761473	129	601											
TNS1	7145	broad.mit.edu	37	chr2	218686682	218686682	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggaaggggcaagaggacaGagacactgagcacagatgca	15	8	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	218686682	C	C	218686682	1	2	2	0	1	0	0	0	0	0	0	0	16466	957	33	4		4	TNS1	2	218686682	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	11248782	218686682	24512691	130	602											
ZNF142	7701	broad.mit.edu	37	chr2	219503486	219503486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacacgcagtgcatcagccCggttggtgcagtactcacac	11	14	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219503486	A	A	219503486	3	1	2	1	0	0	0	0	1	0	0	0	17857	652	23	1	427	1	ZNF142	2	219503486	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	816804	219503486	23695887	131	603											
STK36	27148	broad.mit.edu	37	chr2	219562210	219562210	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagccctgctgagcctggCcatggccacctttacccagg	12	16	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219562210	T	T	219562210	3	4	2	1	0	0	0	0	1	0	0	0	15420	739	26	4	2876	4	STK36	2	219562210	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	58724	219562210	23637163	132	604											
STK36	27148	broad.mit.edu	37	chr2	219563440	219563440	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgaacacagtgtctgcctCccctagaaccatcgtctcgt	8	14	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219563440	T	T	219563440	3	4	2	1	0	0	0	0	1	0	0	0	15420	855	30	4	3271	4	STK36	2	219563440	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1230	219563440	23635933	133	605											
SPEG	10290	broad.mit.edu	37	chr2	220330715	220330715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcatgtgtgtgtgtgcGcgtgcgtgcgcgtatgctgc	18	8	0	0	rs143744745	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220330715	T	T	220330715	1	4	2	0	1	0	0	0	0	0	0	0	15154	1102	38	3		3	SPEG	2	220330715	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	767275	220330715	22868658	134	606											
ACCN4	55515	broad.mit.edu	37	chr2	220379514	220379514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacccaaggagaaggaggCaggggatgagcagagcctcc	16	9	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220379514	A	A	220379514	3	1	2	1	0	0	0	0	1	0	0	0	131	710	25	3	451	3	ACCN4	2	220379514	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	48799	220379514	22819859	135	607											
CUL3	8452	broad.mit.edu	37	chr2	225376300	225376300	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaatttctggctttccatCtgccatttaaaaatatatat	3	7	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225376300	T	T	225376300	5	4	2	1	0	0	0	0	0	0	1	0	4089	927	32	4	1696	4	CUL3	2	225376300	Splice_Site	SNP	C	TCGA-05-4249-01A-01D-1105-08	4996786	225376300	17823073	136	608											
ARMC9	80210	broad.mit.edu	37	chr2	232141472	232141472	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggctttgctcatgaacctCtgcctccgcagcacaggtct	10	14	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232141472	G	G	232141472	2	3	2	1	0	0	0	0	0	0	0	1	962	900	32	4		4	ARMC9	2	232141472	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	6765172	232141472	11057901	137	609											
DIS3L2	129563	broad.mit.edu	37	chr2	233075098	233075098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgatgatgccctctcctGcaagccactcgctgacggta	9	16	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233075098	T	T	233075098	3	4	2	1	0	0	0	0	1	0	0	0	4577	1319	46	3	1221	3	DIS3L2	2	233075098	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	933626	233075098	10124275	138	610											
DGKD	8527	broad.mit.edu	37	chr2	234360762	234360762	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacatggctgctagtgcataGaaaacagatctcaggattaa	9	7	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234360762	C	C	234360762	1	2	2	0	1	0	0	0	0	0	0	0	4507	957	33	4		4	DGKD	2	234360762	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1285664	234360762	8838611	139	611											
SRGAP3	9901	broad.mit.edu	37	chr3	9097848	9097848	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttatgcacttcgtggcacAagtggactccctgggacaag	11	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9097848	T	T	9097848	1	4	2	0	1	0	0	0	0	0	0	0	15265	145	5	5		5	SRGAP3	3	9097848	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08		9097848	188924582	140	612											
KCNH8	131096	broad.mit.edu	37	chr3	19322621	19322621	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggctttattttttattgatGattgagatttccatagagat	9	3	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19322621	T	T	19322621	1	4	2	0	1	0	0	0	0	0	0	0	8108	1305	45	3		3	KCNH8	3	19322621	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	10224773	19322621	178699809	141	613											
ZNF385D	79750	broad.mit.edu	37	chr3	21467189	21467189	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatattgaaatgaaggaaGgaaaggagggaggaaagaag	17	0	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21467189	A	A	21467189	1	1	2	0	1	0	0	0	0	0	0	0	18004	1015	35	4		4	ZNF385D	3	21467189	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	2144568	21467189	176555241	142	614											
TOP2B	7155	broad.mit.edu	37	chr3	25642557	25642557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaatcttttccacacagcaTatgtttaaagggttataaga	6	7	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25642557	A	A	25642557	1	1	2	0	1	0	0	0	0	0	0	0	16490	1421	49	5		5	TOP2B	3	25642557	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	4175368	25642557	172379873	143	615											
SLC4A7	9497	broad.mit.edu	37	chr3	27465719	27465719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgctcacattctgaaaGtgatgatttatgaatattat	6	5	3	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27465719	T	T	27465719	1	4	2	0	1	0	0	0	0	0	0	0	14772	1044	36	3		3	SLC4A7	3	27465719	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1823162	27465719	170556711	144	616											
SLC4A7	9497	broad.mit.edu	37	chr3	27498176	27498176	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagacgaaatctttccataGtaatatagaaatgccttgtt	6	8	1	2	rs73151853	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27498176	A	A	27498176	1	1	2	0	1	0	0	0	0	0	0	0	14772	1044	36	4		4	SLC4A7	3	27498176	5'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	32457	27498176	170524254	145	617											
PFKFB4	5210	broad.mit.edu	37	chr3	48573763	48573763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctcgctctccccgtgccGgcagaggtagatggagcggg	17	12	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48573763	A	A	48573763	3	1	2	1	0	0	0	0	1	0	0	0	11858	1115	39	4	671	4	PFKFB4	3	48573763	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	21075587	48573763	149448667	146	618											
DAG1	1605	broad.mit.edu	37	chr3	49569641	49569641	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcatgtatggccttcccgAcagcagccacgtgggcaaac	11	14	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49569641	G	G	49569641	3	3	2	1	0	0	0	0	1	0	0	0	4258	275	10	5	1703	5	DAG1	3	49569641	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	995878	49569641	148452789	147	619											
DOCK3	1795	broad.mit.edu	37	chr3	51392314	51392314	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcttctgtttgtggcagaAcaaagaatacgtgtgccgtg	12	8	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51392314	G	G	51392314	3	3	2	1	0	0	0	0	1	0	0	0	4728	57	2	5	4271	5	DOCK3	3	51392314	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	1822673	51392314	146630116	148	620											
STAB1	23166	broad.mit.edu	37	chr3	52553536	52553536	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagagaaatgtcaccgccGccgcccagggcttcggttac	11	15	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52553536	A	A	52553536	3	1	2	1	0	0	0	0	1	0	0	0	15355	1087	38	4	5389	4	STAB1	3	52553536	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1161222	52553536	145468894	149	621											
PBRM1	55193	broad.mit.edu	37	chr3	52661508	52661508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatcacatgcaggatgtaCaaaatgaaagagtcattaaa	7	6	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52661508	A	A	52661508	1	1	2	0	1	0	0	0	0	0	0	0	11585	493	17	3		3	PBRM1	3	52661508	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	107972	52661508	145360922	150	622											
FHIT	2272	broad.mit.edu	37	chr3	60718286	60718286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctgctgtctttggaacCtcgtctgcaaacagctcgaa	8	11	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60718286	A	A	60718286	1	1	2	0	1	0	0	0	0	0	0	0	5934	696	24	2		2	FHIT	3	60718286	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	8056778	60718286	137304144	151	623											
LRIG1	26018	broad.mit.edu	37	chr3	66436828	66436828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagacaccaagcaggaaCcagagcttgaggtccctgtg	11	12	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66436828	A	A	66436828	1	1	2	0	1	0	0	0	0	0	0	0	9031	522	18	3		3	LRIG1	3	66436828	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5718542	66436828	131585602	152	624											
ROBO2	6092	broad.mit.edu	37	chr3	77595510	77595510	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccccacagtttgtggttcGgccaagagatcagattgttg	11	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77595510	A	A	77595510	3	1	2	1	0	0	0	0	1	0	0	0	13625	1116	39	4	984	4	ROBO2	3	77595510	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	11158682	77595510	120426920	153	625											
ROBO2	6092	broad.mit.edu	37	chr3	77612382	77612382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggccaccatccaaaccGcaggtcactgatgttactaa	8	14	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77612382	T	T	77612382	2	4	2	1	0	0	0	0	0	0	0	1	13625	1074	38	3		3	ROBO2	3	77612382	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	16872	77612382	120410048	154	626											
ABI3BP	25890	broad.mit.edu	37	chr3	100498978	100498978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgttattacttacctGgctttttagtggggtgggta	12	6	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100498978	T	T	100498978	3	4	2	1	0	0	0	0	1	0	0	0	91	1348	47	2	1166	2	ABI3BP	3	100498978	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	22886596	100498978	97523452	155	627											
IMPG2	50939	broad.mit.edu	37	chr3	100963143	100963143	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccactaagaggctcttcctCtggaaagtgtgtggatctgt	11	10	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100963143	A	A	100963143	4	1	2	1	0	0	0	0	0	1	0	0	7799	922	32	3	1721	3	IMPG2	3	100963143	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	464165	100963143	97059287	156	628											
MYH15	22989	broad.mit.edu	37	chr3	108159970	108159970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttcgagtttccgcccCctggcagtcagctcagaatt	8	14	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108159970	A	A	108159970	3	1	2	1	0	0	0	0	1	0	0	0	10128	622	22	2	3063	2	MYH15	3	108159970	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	7196827	108159970	89862460	157	629											
TMPRSS7	344805	broad.mit.edu	37	chr3	111794427	111794427	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgggaagcagatccctgTtggggacattcaatcaattc	11	8	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111794427	A	A	111794427	1	1	2	0	1	0	0	0	0	0	0	0	16375	1740	60	5		5	TMPRSS7	3	111794427	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	3634457	111794427	86228003	158	630											
ARHGAP31	57514	broad.mit.edu	37	chr3	119134364	119134364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatggtcaaaatgtgccaGgccagggcggtcccagtcat	12	11	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119134364	T	T	119134364	3	4	2	1	0	0	0	0	1	0	0	0	882	991	35	2	3634	2	ARHGAP31	3	119134364	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	7339937	119134364	78888066	159	631											
POLQ	10721	broad.mit.edu	37	chr3	121206886	121206886	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcaaatgatgcccctgacCatatgaatgaatgattttgc	8	8	1	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121206886	G	G	121206886	3	3	2	1	0	0	0	0	1	0	0	0	12303	595	21	4	2940	4	POLQ	3	121206886	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2072522	121206886	76815544	160	632											
PARP14	54625	broad.mit.edu	37	chr3	122420301	122420301	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtatctgagaagactgTtgaggcctttgcagaagctg	14	6	1	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122420301	A	A	122420301	3	1	2	1	0	0	0	0	1	0	0	0	11552	1725	60	5	2922	5	PARP14	3	122420301	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	1213415	122420301	75602129	161	633											
MYLK	4638	broad.mit.edu	37	chr3	123456177	123456177	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcctctaggagggtgCggcaccaggcagggatcgtt	16	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123456177	T	T	123456177	1	4	2	0	1	0	0	0	0	0	0	0	10150	783	27	4		4	MYLK	3	123456177	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1035876	123456177	74566253	162	634											
CCDC37	348807	broad.mit.edu	37	chr3	126135138	126135138	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggagcctgggccccgcccGacttggcccgacgcccccag	15	19	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126135138	A	A	126135138	1	1	2	0	1	0	0	0	0	0	0	0	2836	1073	37	4		4	CCDC37	3	126135138	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	2678961	126135138	71887292	163	635											
CHCHD6	84303	broad.mit.edu	37	chr3	126485328	126485328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgatcttctctttctcGgtctcacttttgtctcttgg	6	11	6	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126485328	T	T	126485328	1	4	2	0	1	0	0	0	0	0	0	0	3351	1131	39	1		1	CHCHD6	3	126485328	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	350190	126485328	71537102	164	636											
COL6A6	131873	broad.mit.edu	37	chr3	130361756	130361756	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgctctgagtgctccattCaatttacttatttttaaacc	5	9	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130361756	A	A	130361756	1	1	2	0	1	0	0	0	0	0	0	0	3735	841	29	3		3	COL6A6	3	130361756	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3876428	130361756	67660674	165	637											
NPHP3	27031	broad.mit.edu	37	chr3	132423266	132423266	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaagaaaataaagatctTacagcggggtcacccaggcc	10	9	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132423266	C	C	132423266	1	2	2	0	1	0	0	0	0	0	0	0	10675	1769	61	5		5	NPHP3	3	132423266	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	2061510	132423266	65599164	166	638											
RASA2	5922	broad.mit.edu	37	chr3	141327427	141327427	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtactctgcagggtgagcCgatgcaatcaaaacaggctc	11	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141327427	T	T	141327427	4	4	2	1	0	0	0	0	0	1	0	0	13169	644	23	4	2195	4	RASA2	3	141327427	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	8904161	141327427	56695003	167	639											
PLSCR4	57088	broad.mit.edu	37	chr3	145913109	145913109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttatgatgattgaaacgCattgaagcatgttttaatgt	8	5	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145913109	A	A	145913109	1	1	2	0	1	0	0	0	0	0	0	0	12207	725	25	3		3	PLSCR4	3	145913109	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	4585682	145913109	52109321	168	640											
SCHIP1	29970	broad.mit.edu	37	chr3	159614441	159614441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcagtttgcaggatgctGtagctattgattgaaaagca	10	6	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159614441	T	T	159614441	1	4	2	0	1	0	0	0	0	0	0	0	14017	1392	48	3		3	SCHIP1	3	159614441	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	13701332	159614441	38407989	169	641											
ZBBX	79740	broad.mit.edu	37	chr3	167068302	167068302	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctccacattcaaggcatAcctaaaaagatattttttaa	3	9	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167068302	T	T	167068302	3	4	2	1	0	0	0	0	1	0	0	0	17643	405	14	5	2020	5	ZBBX	3	167068302	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	7453861	167068302	30954128	170	642											
ZBBX	79740	broad.mit.edu	37	chr3	167086333	167086333	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttctcaaactctaactgtActttctccattcgcagttct	5	12	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167086333	T	T	167086333	3	4	2	1	0	0	0	0	1	0	0	0	17643	391	14	5	2372	5	ZBBX	3	167086333	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	18031	167086333	30936097	171	643											
NLGN1	22871	broad.mit.edu	37	chr3	173323002	173323002	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgttggcatgtagacAtattttacatgcgtgcatgg	10	7	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173323002	T	T	173323002	1	4	2	0	1	0	0	0	0	0	0	0	10556	232	8	5		5	NLGN1	3	173323002	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	6236669	173323002	24699428	172	644											
PIK3CA	5290	broad.mit.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4	rs104886003		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178936091	A	A	178936091	3	1	2	1	0	0	0	0	1	0	0	0	12008	1291	45	4	1667	4	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	5613089	178936091	19086339	173	645											
YEATS2	55689	broad.mit.edu	37	chr3	183432964	183432964	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatcatgtctggaatcaAgcgaaccatcaaagaaaccg	8	10	5	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183432964	T	T	183432964	3	4	2	1	0	0	0	0	1	0	0	0	17599	72	3	5	16	5	YEATS2	3	183432964	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	4496873	183432964	14589466	174	646											
SST	6750	broad.mit.edu	37	chr3	187387109	187387109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagagagaaagagaagtgGggaggacaatggaaaaaatt	14	1	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187387109	T	T	187387109	1	4	2	0	1	0	0	0	0	0	0	0	15314	1247	43	2		2	SST	3	187387109	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3954145	187387109	10635321	175	647											
OSTalpha	200931	broad.mit.edu	37	chr3	195953990	195953990	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagagctcggcacccacGgtgaggcccccggggctgcc	16	15	0	2	rs139345051		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195953990	A	A	195953990	2	1	2	1	0	0	0	0	0	0	0	1	11394	1130	39	4		4	OSTalpha	3	195953990	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	8566881	195953990	2068440	176	648											
LRRC33	375387	broad.mit.edu	37	chr3	196386524	196386524	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatctctagagccatccccGgcggttgcagggacagtctg	12	13	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196386524	C	C	196386524	1	2	2	0	1	0	0	0	0	0	0	0	9075	1131	39	4		4	LRRC33	3	196386524	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	432534	196386524	1635906	177	649											
PDE6B	5158	broad.mit.edu	37	chr4	647926	647926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagccgtactcgggcccaCgcacgcctgatggccgggtg	14	17	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	647926	A	A	647926	3	1	2	1	0	0	0	0	1	0	0	0	11740	536	19	3	928	3	PDE6B	4	647926	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08		647926	190506350	178	650											
DCAF16	54876	broad.mit.edu	37	chr4	17805366	17805366	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcatgatctctagagagCcggctgggacttgtaagagg	16	7	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17805366	A	A	17805366	2	1	2	1	0	0	0	0	0	0	0	1	4301	726	26	3		3	DCAF16	4	17805366	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	17157440	17805366	173348910	179	651											
LCORL	254251	broad.mit.edu	37	chr4	17913742	17913743	+	Intron	DNP	TC	AA	AA													ggacgtgagggctcaaatttTcgcaaatactgtggacaatg							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	17913743	AA	AA	17913742	1	1	2	0	1	0	0	0	0	0	0	0	8762	1798	62	5		5	LCORL	4	17913742	Intron	DNP	TC	TCGA-05-4249-01A-01D-1105-08	108376	17913742	173240534	180	652											
PCDH7	5099	broad.mit.edu	37	chr4	31144129	31144129	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagatgtagccctgactggGaagtgcactcgtgagtgtga	14	9	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31144129	T	T	31144129	2	4	2	1	0	0	0	0	0	0	0	1	11610	1161	41	3		3	PCDH7	4	31144129	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	13230387	31144129	160010147	181	653											
KLB	152831	broad.mit.edu	37	chr4	39408690	39408691	+	Missense_Mutation	DNP	CT	AA	AA													gattgcaaagatctgtcatcCtgtcagcacttattctgcta							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	39408691	AA	AA	39408690	3	1	2	1	0	0	0	0	1	0	0	0	8403	680	24	2	123	2	KLB	4	39408690	Missense_Mutation	DNP	CT	TCGA-05-4249-01A-01D-1105-08	8264561	39408690	151745586	182	654											
UBE2K	3093	broad.mit.edu	37	chr4	39771868	39771868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgagtgcaggttgaggtGgtcgtgcagggtggacttct	17	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39771868	T	T	39771868	1	4	2	0	1	0	0	0	0	0	0	0	16988	1363	47	2		2	UBE2K	4	39771868	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	363178	39771868	151382408	183	655											
APBB2	323	broad.mit.edu	37	chr4	40895191	40895191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgaacacctcggagccCctcagtaccatgtgtcactg	9	14	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40895191	A	A	40895191	1	1	2	0	1	0	0	0	0	0	0	0	763	638	22	2		2	APBB2	4	40895191	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1123323	40895191	150259085	184	656											
ATP10D	57205	broad.mit.edu	37	chr4	47556801	47556801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttagtcagattacacctcGgctctttatgccactagatg	7	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47556801	T	T	47556801	3	4	2	1	0	0	0	0	1	0	0	0	1122	1116	39	1	1732	1	ATP10D	4	47556801	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	6661610	47556801	143597475	185	657											
LPHN3	23284	broad.mit.edu	37	chr4	62598544	62598544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtccgaccaccaatctgGggcgtggtgcaaagaccctc	12	13	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62598544	T	T	62598544	3	4	2	1	0	0	0	0	1	0	0	0	9004	1232	43	2	485	2	LPHN3	4	62598544	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	15041743	62598544	128555732	186	658											
GC	2638	broad.mit.edu	37	chr4	72631270	72631270	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccatgcagagctttcgttCcaggccctctttggtgcagc	11	13	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72631270	A	A	72631270	4	1	2	1	0	0	0	0	0	1	0	0	6344	864	30	3	1108	3	GC	4	72631270	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	10032726	72631270	118523006	187	659											
CCNG2	901	broad.mit.edu	37	chr4	78083007	78083007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggactcttaacttttacActtgttttttttcttatatc	4	7	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78083007	G	G	78083007	1	3	2	0	1	0	0	0	0	0	0	0	2954	174	6	5		5	CCNG2	4	78083007	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	5451737	78083007	113071269	188	660											
HELQ	113510	broad.mit.edu	37	chr4	84348734	84348734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgcctgaagtatatcatCcaatcagggttacactgtga	8	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84348734	A	A	84348734	3	1	2	1	0	0	0	0	1	0	0	0	7114	856	30	3	671	3	HELQ	4	84348734	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6265727	84348734	106805542	189	661											
UNC5C	8633	broad.mit.edu	37	chr4	96106167	96106167	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctctttcttagagatgtctCcagaccttttgttcggcttg	8	11	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96106167	A	A	96106167	1	1	2	0	1	0	0	0	0	0	0	0	17119	870	30	3		3	UNC5C	4	96106167	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	11757433	96106167	95048109	190	662											
CFI	3426	broad.mit.edu	37	chr4	110687980	110687980	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgagatgtataagtgaCctgtaaaatgcaaaataaac	7	6	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110687980	G	G	110687980	3	3	2	1	0	0	0	0	1	0	0	0	3319	521	18	4	1741	4	CFI	4	110687980	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	14581813	110687980	80466296	191	663											
ALPK1	80216	broad.mit.edu	37	chr4	113356422	113356422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaaagaaatgctttttgGgttcatcatcttcatcaaga	7	7	5	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113356422	T	T	113356422	3	4	2	1	0	0	0	0	1	0	0	0	544	1241	43	2	3191	2	ALPK1	4	113356422	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2668442	113356422	77797854	192	664											
FAT4	79633	broad.mit.edu	37	chr4	126239750	126239750	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtactgtcaaatatagcatAtctgctggggacaggtctcg	12	8	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126239750	G	G	126239750	3	3	2	1	0	0	0	0	1	0	0	0	5749	439	16	5	2186	5	FAT4	4	126239750	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	12883328	126239750	64914526	193	665											
GAB1	2549	broad.mit.edu	37	chr4	144359061	144359061	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctaatgagaaaagccctAtcttttgattgcttagcgat	7	7	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144359061	G	G	144359061	1	3	2	0	1	0	0	0	0	0	0	0	6208	464	16	5		5	GAB1	4	144359061	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	18119311	144359061	46795215	194	666											
GYPA	2993	broad.mit.edu	37	chr4	145034897	145034897	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaataaaacaaatgcaatTggctagggatttagacagac	10	5	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145034897	A	A	145034897	1	1	2	0	1	0	0	0	0	0	0	0	6973	1827	63	5		5	GYPA	4	145034897	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	675836	145034897	46119379	195	667											
LRBA	987	broad.mit.edu	37	chr4	151773298	151773298	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagtttctggtgacatagcTgaagaccctgatgctgtcat	11	8	2	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151773298	A	A	151773298	2	1	2	1	0	0	0	0	0	0	0	1	9018	1567	55	5		5	LRBA	4	151773298	Silent	SNP	T	TCGA-05-4249-01A-01D-1105-08	6738401	151773298	39380978	196	668											
FHDC1	85462	broad.mit.edu	37	chr4	153864685	153864685	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaagaactttaaattcatCcttcagagaagctcgagaag	9	7	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153864685	T	T	153864685	3	4	2	1	0	0	0	0	1	0	0	0	5933	855	30	4	478	4	FHDC1	4	153864685	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2091387	153864685	37289591	197	669											
GLRB	2743	broad.mit.edu	37	chr4	157999329	157999329	+	Intron	DEL	G	-	-													catgtcttatattcttatatGgagaaatgttattgcgtgtt							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	157999329	-	-	157999329	6	5	2	0	1	1	0	1	0	0	0	0	6522	1363	47	0		0	GLRB	4	157999329	Intron	DEL	G	TCGA-05-4249-01A-01D-1105-08	4134644	157999329	33154947	198	670											
NAF1	92345	broad.mit.edu	37	chr4	164061566	164061566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacataaaggcctcttttaaCatgtaaaataactatttgaa	4	6	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164061566	A	A	164061566	1	1	2	0	1	0	0	0	0	0	0	0	10234	493	17	3		3	NAF1	4	164061566	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	6062237	164061566	27092710	199	671											
SPOCK3	50859	broad.mit.edu	37	chr4	167656177	167656177	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataatatcgtcttcatcatcCtcatcatcagtccattcatg	3	12	7	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167656177	T	T	167656177	2	4	2	1	0	0	0	0	0	0	0	1	15199	680	24	4		4	SPOCK3	4	167656177	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	3594611	167656177	23498099	200	672											
ASB5	140458	broad.mit.edu	37	chr4	177190270	177190270	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaccgacattgctgcagaaGaatctgcggcggtctttagt	11	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177190270	T	T	177190270	1	4	2	0	1	0	0	0	0	0	0	0	1030	957	33	3		3	ASB5	4	177190270	5'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	9534093	177190270	13964006	201	673											
ODZ3	55714	broad.mit.edu	37	chr4	183676073	183676073	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagttgcgtctccaactgAtcaagaactctacatctttg	7	10	4	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183676073	C	C	183676073	3	2	2	1	0	0	0	0	1	0	0	0	10931	333	12	5	4635	5	ODZ3	4	183676073	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	6485803	183676073	7478203	202	674											
EXOC3	11336	broad.mit.edu	37	chr5	454086	454086	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caccaagccctgagcacgcgGatgcaggacctcgcatcgga	12	15	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	454086	T	T	454086	2	4	2	1	0	0	0	0	0	0	0	1	5345	1161	41	3		3	EXOC3	5	454086	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08		454086	180461174	203	675											
MARCH6	10299	broad.mit.edu	37	chr5	10426693	10426693	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttattaacattggacattctCtttacccctagtaaaaagga	5	8	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10426693	T	T	10426693	1	4	2	0	1	0	0	0	0	0	0	0	9397	928	32	4		4	MARCH6	5	10426693	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	9972607	10426693	170488567	204	676											
TRIO	7204	broad.mit.edu	37	chr5	14471394	14471394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatcatgggctgtgggcaGtaagtgttgttgattatgtc	13	6	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14471394	T	T	14471394	1	4	2	0	1	0	0	0	0	0	0	0	16677	1044	36	3		3	TRIO	5	14471394	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	4044701	14471394	166443866	205	677											
ADAMTS12	81792	broad.mit.edu	37	chr5	33577084	33577084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgggctttagtgttggtGggttttttccattggaaata	14	4	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33577084	T	T	33577084	3	4	2	1	0	0	0	0	1	0	0	0	257	1348	47	2	1761	2	ADAMTS12	5	33577084	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	19105690	33577084	147338176	206	678											
ADAMTS12	81792	broad.mit.edu	37	chr5	33683976	33683976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcataccatgttcatgatGgtgaggatgtaggactccac	12	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33683976	T	T	33683976	2	4	2	1	0	0	0	0	0	0	0	1	257	1335	47	2		2	ADAMTS12	5	33683976	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	106892	33683976	147231284	207	679											
C5orf42	65250	broad.mit.edu	37	chr5	37125560	37125560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttttaaatttgttaagCagataagatatatcatgact	6	4	1	3	rs139274257	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37125560	A	A	37125560	1	1	2	0	1	0	0	0	0	0	0	0	2324	725	25	3		3	C5orf42	5	37125560	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3441584	37125560	143789700	208	680											
HEATR7B2	133558	broad.mit.edu	37	chr5	41004553	41004553	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagagccttcaagctttcAcagacgacttcagtgcgagc	9	11	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41004553	G	G	41004553	2	3	2	1	0	0	0	0	0	0	0	1	7102	157	6	5		5	HEATR7B2	5	41004553	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	3878993	41004553	139910707	209	681											
C6	729	broad.mit.edu	37	chr5	41160203	41160203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttagaatactctttggagGggaaaacttatctacctcac	7	9	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41160203	T	T	41160203	1	4	2	0	1	0	0	0	0	0	0	0	2338	1247	43	2		2	C6	5	41160203	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	155650	41160203	139755057	210	682											
NNT	23530	broad.mit.edu	37	chr5	43704593	43704593	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagtatacatggtgatgtAcatctgtagcaaagctcttg	9	7	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43704593	T	T	43704593	1	4	2	0	1	0	0	0	0	0	0	0	10605	406	14	5		5	NNT	5	43704593	3'UTR	SNP	A	TCGA-05-4249-01A-01D-1105-08	2544390	43704593	137210667	211	683											
ITGA2	3673	broad.mit.edu	37	chr5	52360751	52360751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgcaagggcattttgGgtcagcaccaatttcttgaa	9	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52360751	T	T	52360751	3	4	2	1	0	0	0	0	1	0	0	0	7945	1232	43	2	1666	2	ITGA2	5	52360751	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	8656158	52360751	128554509	212	684											
FST	10468	broad.mit.edu	37	chr5	52778792	52778792	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcaaggaggagtgctgCagcaccggccggctgagcac	16	12	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52778792	A	A	52778792	4	1	2	1	0	0	0	0	0	1	0	0	6136	718	25	3	174	3	FST	5	52778792	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	418041	52778792	128136468	213	685											
GZMA	3001	broad.mit.edu	37	chr5	54401488	54401488	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaagtttgtaaagatactCtaatttggggaaacattaat	7	3	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54401488	A	A	54401488	1	1	2	0	1	0	0	0	0	0	0	0	6980	928	32	3		3	GZMA	5	54401488	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1622696	54401488	126513772	214	686											
SKIV2L2	23517	broad.mit.edu	37	chr5	54654435	54654435	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atacattcagatgtctggtcGtgctggaaggagaggaatgg	15	5	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54654435	C	C	54654435	3	2	2	1	0	0	0	0	1	0	0	0	14473	1145	40	4	1626	4	SKIV2L2	5	54654435	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	252947	54654435	126260825	215	687											
NLN	57486	broad.mit.edu	37	chr5	65029493	65029494	+	Intron	DNP	AT	GC	GC													ttgctcttagggaaggcctgAttagtgggatggatacgctt							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	65029494	GC	GC	65029493	1	3	2	0	1	0	0	0	0	0	0	0	10562	348	12	5		5	NLN	5	65029493	Intron	DNP	AT	TCGA-05-4249-01A-01D-1105-08	10375058	65029493	115885767	216	688											
FAM169A	26049	broad.mit.edu	37	chr5	74091819	74091819	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaggtaaaatttagtttActttttttcattttgctgaa	6	3	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74091819	T	T	74091819	1	4	2	0	1	0	0	0	0	0	0	0	5532	406	14	5		5	FAM169A	5	74091819	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	9062326	74091819	106823441	217	689											
SV2C	22987	broad.mit.edu	37	chr5	75427939	75427939	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagtacaaggaccggcggGagctggaatcagaaaggaga	16	6	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75427939	T	T	75427939	4	4	2	1	0	0	0	0	0	1	0	0	15537	1175	41	3	366	3	SV2C	5	75427939	Nonsense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1336120	75427939	105487321	218	690											
THBS4	7060	broad.mit.edu	37	chr5	79375018	79375018	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcatgtggaagcagacGgagcagacatattggcaagc	15	7	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79375018	A	A	79375018	2	1	2	1	0	0	0	0	0	0	0	1	15979	1103	39	4		4	THBS4	5	79375018	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	3947079	79375018	101540242	219	691											
RPS23	6228	broad.mit.edu	37	chr5	81574063	81574063	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcatcccccgccctactcTattcgcatccgcccgcccgt	7	21	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81574063	C	C	81574063	1	2	2	0	1	0	0	0	0	0	0	0	13745	1537	53	5		5	RPS23	5	81574063	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	2199045	81574063	99341197	220	692											
TTC37	9652	broad.mit.edu	37	chr5	94863722	94863722	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttgacaagtctacctgatCaagcgtacgaattgcttcct	7	11	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94863722	A	A	94863722	3	1	2	1	0	0	0	0	1	0	0	0	16831	826	29	3	3689	3	TTC37	5	94863722	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	13289659	94863722	86051538	221	693											
SLCO6A1	133482	broad.mit.edu	37	chr5	101748939	101748939	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgagatccataaaatatgCttattgaaataatttctttt	5	4	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101748939	G	G	101748939	1	3	2	0	1	0	0	0	0	0	0	0	14846	812	28	4		4	SLCO6A1	5	101748939	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	6885217	101748939	79166321	222	694											
NUDT12	83594	broad.mit.edu	37	chr5	102895641	102895641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaatgagttatttagtaGttcaacaatataaatatgga	7	4	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102895641	T	T	102895641	1	4	2	0	1	0	0	0	0	0	0	0	10823	1044	36	3		3	NUDT12	5	102895641	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1146702	102895641	78019619	223	695											
PCDHA2	56146	broad.mit.edu	37	chr5	140176000	140176000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcgtgggatgcggacgCgcaggagaacgcgctggtgt	19	9	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140176000	A	A	140176000	3	1	2	1	0	0	0	0	1	0	0	0	11618	768	27	3	1453	3	PCDHA2	5	140176000	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	37280359	140176000	40739260	224	696											
PCDHA12	56137	broad.mit.edu	37	chr5	140256796	140256796	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaggcgcagttagcgagtTggtaccgcggtcggtgggtg	20	7	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140256796	A	A	140256796	4	1	2	1	0	0	0	0	0	1	0	0	11616	1821	63	5	1741	5	PCDHA12	5	140256796	Nonsense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	80796	140256796	40658464	225	697											
PCDHB3	56132	broad.mit.edu	37	chr5	140480154	140480154	+	5'Flank	DEL	G	-	-													ctaggccgtctacaaaggttGtggggcaaaagactgtttcc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140480154	-	-	140480154	6	5	2	0	1	1	0	1	0	0	0	0	11637	1392	48	0		0	PCDHB3	5	140480154	5'Flank	DEL	G	TCGA-05-4249-01A-01D-1105-08	223358	140480154	40435106	226	698											
PCDHB16	57717	broad.mit.edu	37	chr5	140564342	140564342	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctttccagggcgtctGgtggacgtaagcggcaccgg	16	13	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140564342	T	T	140564342	2	4	2	1	0	0	0	0	0	0	0	1	11635	1335	47	2		2	PCDHB16	5	140564342	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	84188	140564342	40350918	227	699											
PCDHGA10	56106	broad.mit.edu	37	chr5	140793377	140793377	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcgaggaagaggccattcAccacctggtcctcaccgcct	10	16	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140793377	G	G	140793377	3	3	2	1	0	0	0	0	1	0	0	0	11645	159	6	5	637	5	PCDHGA10	5	140793377	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	229035	140793377	40121883	228	700											
PCDHGB7	56099	broad.mit.edu	37	chr5	140797646	140797646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgagcgcggagaagctgCacttcagcgtagacgcgcag	16	10	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140797646	A	A	140797646	3	1	2	1	0	0	0	0	1	0	0	0	11662	710	25	3	222	3	PCDHGB7	5	140797646	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	4269	140797646	40117614	229	701											
SPINK5	11005	broad.mit.edu	37	chr5	147488428	147488428	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgagatcatcagagccacAtaaatattcaacgatcactc	5	10	4	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147488428	G	G	147488428	1	3	2	0	1	0	0	0	0	0	0	0	15180	232	8	5		5	SPINK5	5	147488428	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	6690782	147488428	33426832	230	702											
FBXO38	81545	broad.mit.edu	37	chr5	147796641	147796641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagaactccaacaatgacGataataatgcccagaataac	5	11	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147796641	T	T	147796641	3	4	2	1	0	0	0	0	1	0	0	0	5803	1058	37	3	1534	3	FBXO38	5	147796641	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	308213	147796641	33118619	231	703											
HTR4	3360	broad.mit.edu	37	chr5	147845314	147845314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcacccttaactttgtccTgtgaggacagaagtataaac	9	9	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147845314	A	A	147845314	1	1	2	0	1	0	0	0	0	0	0	0	7519	1595	55	5		5	HTR4	5	147845314	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	48673	147845314	33069946	232	704											
CSF1R	1436	broad.mit.edu	37	chr5	149435795	149435795	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttacattgcccttgacaAtgtagttggagtcattcatg	8	9	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149435795	G	G	149435795	3	3	2	1	0	0	0	0	1	0	0	0	3966	101	4	5	509	5	CSF1R	5	149435795	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	1590481	149435795	31479465	233	705											
NMUR2	56923	broad.mit.edu	37	chr5	151777533	151777533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcaggataaattggaaCctaccccagcagcatttagt	8	9	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151777533	A	A	151777533	1	1	2	0	1	0	0	0	0	0	0	0	10602	522	18	3		3	NMUR2	5	151777533	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	2341738	151777533	29137727	234	706											
ODZ2	57451	broad.mit.edu	37	chr5	167674480	167674480	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactggatgacggtgcaatAtgacagcatgggcagggtga	16	6	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167674480	G	G	167674480	3	3	2	1	0	0	0	0	1	0	0	0	10930	449	16	5	6615	5	ODZ2	5	167674480	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	15896947	167674480	13240780	235	707											
NSD1	64324	broad.mit.edu	37	chr5	176665401	176665401	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttggctcagtcagaacttgGaggtggacatgctgagttgc	14	8	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176665401	C	C	176665401	3	2	2	1	0	0	0	0	1	0	0	0	10764	1174	41	4	4107	4	NSD1	5	176665401	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	8990921	176665401	4249859	236	708											
HNRNPAB	3182	broad.mit.edu	37	chr5	177632764	177632764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtagacttcgtgagaaCtttgccagggccagtccttt	11	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177632764	A	A	177632764	1	1	2	0	1	0	0	0	0	0	0	0	7328	580	20	3		3	HNRNPAB	5	177632764	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	967363	177632764	3282496	237	709											
GRM6	2916	broad.mit.edu	37	chr5	178424907	178424907	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggcatagaggttgcaccCcaaaacccccgccctagcac	9	17	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178424907	A	A	178424907	1	1	2	0	1	0	0	0	0	0	0	0	6867	638	22	2		2	GRM6	5	178424907	5'Flank	SNP	C	TCGA-05-4249-01A-01D-1105-08	792143	178424907	2490353	238	710											
CANX	821	broad.mit.edu	37	chr5	179149988	179149988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgggccaatgatggatggGgcctgaagaaagctgctgat	15	6	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179149988	T	T	179149988	3	4	2	1	0	0	0	0	1	0	0	0	2644	1232	43	2	1404	2	CANX	5	179149988	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	725081	179149988	1765272	239	711											
RASGEF1C	255426	broad.mit.edu	37	chr5	179564831	179564831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgatgccccccgtgcgtGgtggaggagagcccactctc	13	16	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179564831	T	T	179564831	1	4	2	0	1	0	0	0	0	0	0	0	13179	1363	47	2		2	RASGEF1C	5	179564831	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	414843	179564831	1350429	240	712											
GFPT2	9945	broad.mit.edu	37	chr5	179765436	179765436	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccctgcagtggagatgggtGagaccacagcagcggagccc	15	13	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179765436	A	A	179765436	1	1	2	0	1	0	0	0	0	0	0	0	6410	1305	45	4		4	GFPT2	5	179765436	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	200605	179765436	1149824	241	713											
GFPT2	9945	broad.mit.edu	37	chr5	179765470	179765470	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagcccggtccccagccacGaggcgggcggccgcacaccc	15	19	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179765470	A	A	179765470	1	1	2	0	1	0	0	0	0	0	0	0	6410	1073	37	4		4	GFPT2	5	179765470	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	34	179765470	1149790	242	714											
SERPINB1	1992	broad.mit.edu	37	chr6	2838261	2838265	+	Intron	DEL	ATATA	-	-													aaaaaaggaaaaggaaatatAtatataactcctactacata							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2838265	-	-	2838261	6	5	2	0	1	1	0	1	0	0	0	0	14209	464	16	0		0	SERPINB1	6	2838261	Intron	DEL	ATATA	TCGA-05-4249-01A-01D-1105-08		2838261	168276806	243	715											
F13A1	2162	broad.mit.edu	37	chr6	6182453	6182453	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttaactgtccatagagcagtCgtctagagatctctggagct	10	9	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6182453	T	T	6182453	1	4	2	0	1	0	0	0	0	0	0	0	5383	899	31	4		4	F13A1	6	6182453	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3344192	6182453	164932614	244	716											
GABBR1	2550	broad.mit.edu	37	chr6	29541893	29541893	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcttggacctctgtttcaCcataagttgtgtccccggga	9	12	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29541893	G	G	29541893	1	3	2	0	1	0	0	0	0	0	0	0	6215	522	18	4		4	GABBR1	6	29541893	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	23359440	29541893	141573174	245	717											
GABBR1	2550	broad.mit.edu	37	chr6	29574725	29574725	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccagatggcgagagtgagGacatccatgcccaccagcag	13	12	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29574725	A	A	29574725	2	1	2	1	0	0	0	0	0	0	0	1	6215	1161	41	4		4	GABBR1	6	29574725	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	32832	29574725	141540342	246	718											
SLC44A4	80736	broad.mit.edu	37	chr6	31843659	31843659	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgccacagtaggccccaGtagagttcctggggtagagg	14	11	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31843659	A	A	31843659	3	1	2	1	0	0	0	0	1	0	0	0	14752	1029	36	4	1992	4	SLC44A4	6	31843659	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2268934	31843659	139271408	247	719											
ATF6B	1388	broad.mit.edu	37	chr6	32093856	32093856	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacataacacattctcccgTagtagagccaaggattgggg	10	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32093856	C	C	32093856	1	2	2	0	1	0	0	0	0	0	0	0	1089	1653	57	5		5	ATF6B	6	32093856	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	250197	32093856	139021211	248	720											
PPT2	9374	broad.mit.edu	37	chr6	32123309	32123309	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttggcacagggtgtgcctgCcttctgtaagcctcagtctc	11	12	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32123309	G	G	32123309	1	3	2	0	1	0	0	0	0	0	0	0	12513	754	26	4		4	PPT2	6	32123309	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	29453	32123309	138991758	249	721											
SPDEF	25803	broad.mit.edu	37	chr6	34507190	34507190	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgggtggccagggagGgtggcggtgagtgggaatgg	25	4	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34507190	C	C	34507190	1	2	2	0	1	0	0	0	0	0	0	0	15142	1247	43	4		4	SPDEF	6	34507190	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	2383881	34507190	136607877	250	722											
PPARD	5467	broad.mit.edu	37	chr6	35393441	35393441	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaagtggattaagaccAggggtagggagattagaaca	14	3	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35393441	T	T	35393441	1	4	2	0	1	0	0	0	0	0	0	0	12394	203	7	5		5	PPARD	6	35393441	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	886251	35393441	135721626	251	723											
KCNK17	89822	broad.mit.edu	37	chr6	39278775	39278775	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctccgtttttgtatgcttgGacgacatcctggggaagagg	14	8	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39278775	A	A	39278775	2	1	2	1	0	0	0	0	0	0	0	1	8134	1161	41	4		4	KCNK17	6	39278775	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	3885334	39278775	131836292	252	724											
KIF6	221458	broad.mit.edu	37	chr6	39330242	39330242	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccagttgtgatcgcagCttctcctcctgctggtctgg	10	14	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39330242	A	A	39330242	3	1	2	1	0	0	0	0	1	0	0	0	8378	796	28	3	558	3	KIF6	6	39330242	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	51467	39330242	131784825	253	725											
TREML2	79865	broad.mit.edu	37	chr6	41160566	41160566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtctcttcttccaaaaccCatagaccatgatcagcatca	5	13	4	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41160566	A	A	41160566	3	1	2	1	0	0	0	0	1	0	0	0	16597	594	21	2	114	2	TREML2	6	41160566	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1830324	41160566	129954501	254	726											
TRERF1	55809	broad.mit.edu	37	chr6	42230897	42230897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccctgagagaccaagcCgtatccaagctcaggtcagt	10	13	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42230897	A	A	42230897	1	1	2	0	1	0	0	0	0	0	0	0	16599	667	23	1		1	TRERF1	6	42230897	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1070331	42230897	128884170	255	727											
RUNX2	860	broad.mit.edu	37	chr6	45480163	45480163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaaagaccgtgctttaaCtaaaaatccatccctgcaca	6	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45480163	A	A	45480163	1	1	2	0	1	0	0	0	0	0	0	0	13859	580	20	3		3	RUNX2	6	45480163	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3249266	45480163	125634904	256	728											
RCAN2	10231	broad.mit.edu	37	chr6	46293311	46293311	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgctgtggccaggcctcGgtgctgccttgctctgggga	15	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46293311	T	T	46293311	1	4	2	0	1	0	0	0	0	0	0	0	13277	1131	39	1		1	RCAN2	6	46293311	5'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	813148	46293311	124821756	257	729											
TINAG	27283	broad.mit.edu	37	chr6	54191689	54191689	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactttgccacctagtcccaTgctcctgagcatgaatgaaa	7	13	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54191689	A	A	54191689	3	1	2	1	0	0	0	0	1	0	0	0	16044	1464	51	5	613	5	TINAG	6	54191689	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	7898378	54191689	116923378	258	730											
BAI3	577	broad.mit.edu	37	chr6	69348714	69348714	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaagtgaaatgtttccTaaaaactttacaaactgcac	5	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69348714	A	A	69348714	2	1	2	1	0	0	0	0	0	0	0	1	1305	1509	53	5		5	BAI3	6	69348714	Silent	SNP	T	TCGA-05-4249-01A-01D-1105-08	15157025	69348714	101766353	259	731											
OOEP	441161	broad.mit.edu	37	chr6	74079269	74079269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgtagagagctgctctgCcaagcctctctcagactgga	11	12	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74079269	A	A	74079269	1	1	2	0	1	0	0	0	0	0	0	0	10964	754	26	3		3	OOEP	6	74079269	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	4730555	74079269	97035798	260	732											
COL12A1	1303	broad.mit.edu	37	chr6	75844451	75844451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcacttactggtcttgcCtcttcccgtcatccgacctc	6	16	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75844451	A	A	75844451	3	1	2	1	0	0	0	0	1	0	0	0	3701	681	24	2	3816	2	COL12A1	6	75844451	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1765182	75844451	95270616	261	733											
MDN1	23195	broad.mit.edu	37	chr6	90503894	90503894	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttgtgctcttcattcataCaggtaaccaaagcaagacaa	6	10	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90503894	G	G	90503894	3	3	2	1	0	0	0	0	1	0	0	0	9508	478	17	4	16599	4	MDN1	6	90503894	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	14659443	90503894	80611173	262	734											
CASP8AP2	9994	broad.mit.edu	37	chr6	90576192	90576192	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattcaaggcaaaattttcAttaatacaatttcacagaat	3	6	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90576192	G	G	90576192	2	3	2	1	0	0	0	0	0	0	0	1	2704	204	8	5		5	CASP8AP2	6	90576192	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	72298	90576192	80538875	263	735											
POPDC3	64208	broad.mit.edu	37	chr6	105609367	105609367	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggcataacagtgttcctTttccaaagtaaccacttcag	6	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105609367	G	G	105609367	3	3	2	1	0	0	0	0	1	0	0	0	12351	1850	64	5	469	5	POPDC3	6	105609367	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	15033175	105609367	65505700	264	736											
FRK	2444	broad.mit.edu	37	chr6	116289825	116289827	+	In_Frame_Del	DEL	TTC	-	-													ttcgttcagtgttgaaaagaTtcttcttcgcgtgagaaaaa							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116289827	-	-	116289825	7	5	2	1	0	1	0	1	0	0	0	0	6108	1493	52	0	997	0	FRK	6	116289825	In_Frame_Del	DEL	TTC	TCGA-05-4249-01A-01D-1105-08	10680458	116289825	54825242	265	737											
LAMA2	3908	broad.mit.edu	37	chr6	129649532	129649532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatggacacagcagcctgtGtgaccctgaaacatcgatat	9	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129649532	T	T	129649532	3	4	2	1	0	0	0	0	1	0	0	0	8678	1377	48	3	4400	3	LAMA2	6	129649532	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	13359707	129649532	41465535	266	738											
MOXD1	26002	broad.mit.edu	37	chr6	132695975	132695975	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacagagagaaaagaattcAtaggacctttaaagacaaag	8	5	1	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132695975	T	T	132695975	1	4	2	0	1	0	0	0	0	0	0	0	9814	232	8	5		5	MOXD1	6	132695975	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	3046443	132695975	38419092	267	739											
MAP3K5	4217	broad.mit.edu	37	chr6	136901580	136901580	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttagcctactttaatttTtaattgcaaatagcctagat	4	7	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136901580	G	G	136901580	1	3	2	0	1	0	0	0	0	0	0	0	9345	1856	64	5		5	MAP3K5	6	136901580	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	4205605	136901580	34213487	268	740											
UTRN	7402	broad.mit.edu	37	chr6	144719265	144719265	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtagatggtttgcctgtgtCatcaccacgttttccctgtt	9	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144719265	T	T	144719265	1	4	2	0	1	0	0	0	0	0	0	0	17230	841	29	4		4	UTRN	6	144719265	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	7817685	144719265	26395802	269	741											
UTRN	7402	broad.mit.edu	37	chr6	144719292	144719292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttttccctgttccctggGgtggtgtacctgctcttgca	11	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144719292	T	T	144719292	1	4	2	0	1	0	0	0	0	0	0	0	17230	1247	43	2		2	UTRN	6	144719292	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	27	144719292	26395775	270	742											
UTRN	7402	broad.mit.edu	37	chr6	144844318	144844318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatagaatgtacagtgatcGgaaagggtatgtgtaaatga	12	2	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144844318	T	T	144844318	3	4	2	1	0	0	0	0	1	0	0	0	17230	1116	39	1	6058	1	UTRN	6	144844318	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	125026	144844318	26270749	271	743											
SHPRH	257218	broad.mit.edu	37	chr6	146276182	146276182	+	Frame_Shift_Del	DEL	A	-	-													taactttacagacaaaggggAaaaaataccaacagtctctt							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	146276182	-	-	146276182	7	5	2	1	0	1	0	1	0	0	0	0	14404	246	9	0	4934	0	SHPRH	6	146276182	Frame_Shift_Del	DEL	A	TCGA-05-4249-01A-01D-1105-08	1431864	146276182	24838885	272	744											
GRM1	2911	broad.mit.edu	37	chr6	146720730	146720730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccgcagtgccttcaccaCctctgatgttgtccgcatgc	9	15	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146720730	A	A	146720730	3	1	2	1	0	0	0	0	1	0	0	0	6862	507	18	3	2581	3	GRM1	6	146720730	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	444548	146720730	24394337	273	745											
SYNE1	23345	broad.mit.edu	37	chr6	152655123	152655123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttagcattttggtgaccCatgggagaatttctgttacc	11	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152655123	A	A	152655123	1	1	2	0	1	0	0	0	0	0	0	0	15564	609	21	2		2	SYNE1	6	152655123	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5934393	152655123	18459944	274	746											
NOX3	50508	broad.mit.edu	37	chr6	155761074	155761074	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaaatccttgcagaggagCgcagtatggacttaccccgt	10	10	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155761074	G	G	155761074	1	3	2	0	1	0	0	0	0	0	0	0	10652	783	27	4		4	NOX3	6	155761074	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3105951	155761074	15353993	275	747											
LPA	4018	broad.mit.edu	37	chr6	161027467	161027467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttccatggcttttcatcCcagcatcgaaacgtgtaggt	8	10	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161027467	A	A	161027467	1	1	2	0	1	0	0	0	0	0	0	0	8990	638	22	2		2	LPA	6	161027467	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5266393	161027467	10087600	276	748											
PLG	5340	broad.mit.edu	37	chr6	161135878	161135878	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacggcaaaatttccaagacCatgtctggactggaatgcca	10	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161135878	A	A	161135878	2	1	2	1	0	0	0	0	0	0	0	1	12181	581	21	2		2	PLG	6	161135878	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	108411	161135878	9979189	277	749											
PLG	5340	broad.mit.edu	37	chr6	161173312	161173312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagcaaagatcaagagaCcaaagttagtcttgtgctct	10	7	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161173312	A	A	161173312	1	1	2	0	1	0	0	0	0	0	0	0	12181	522	18	3		3	PLG	6	161173312	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	37434	161173312	9941755	278	750											
C6orf118	168090	broad.mit.edu	37	chr6	165714065	165714065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagtgaggacacagctgCcatcaccctggcgagtgggc	14	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165714065	A	A	165714065	1	1	2	0	1	0	0	0	0	0	0	0	2346	754	26	3		3	C6orf118	6	165714065	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	4540753	165714065	5401002	279	751											
C6orf118	168090	broad.mit.edu	37	chr6	165715841	165715841	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcttagttccacagtaagtCagctggtgcactggctgaga	11	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165715841	T	T	165715841	1	4	2	0	1	0	0	0	0	0	0	0	2346	841	29	4		4	C6orf118	6	165715841	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1776	165715841	5399226	280	752											
TTLL2	83887	broad.mit.edu	37	chr6	167753913	167753913	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatggcacttccctgtaCcagttcatccccctgacgtt	7	14	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167753913	A	A	167753913	4	1	2	1	0	0	0	0	0	1	0	0	16853	518	18	3	535	3	TTLL2	6	167753913	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2038072	167753913	3361154	281	753											
THBS2	7058	broad.mit.edu	37	chr6	169648860	169648860	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcctgcttgagctgggcCgtgaggaagaagccctcctt	13	13	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169648860	A	A	169648860	2	1	2	1	0	0	0	0	0	0	0	1	15977	639	23	1		1	THBS2	6	169648860	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	1894947	169648860	1466207	282	754											
MPP6	51678	broad.mit.edu	37	chr7	24705104	24705104	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatctcaaggttgtttttaaGagcaaatgtgacttttttga	8	4	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24705104	T	T	24705104	1	4	2	0	1	0	0	0	0	0	0	0	9832	957	33	3		3	MPP6	7	24705104	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08		24705104	134433559	283	755											
EEPD1	80820	broad.mit.edu	37	chr7	36320642	36320642	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgactcagaatcatgcaGtgcctggcttctcaggccgc	11	12	3	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36320642	C	C	36320642	1	2	2	0	1	0	0	0	0	0	0	0	4972	1044	36	4		4	EEPD1	7	36320642	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	11615538	36320642	122818021	284	756											
ANLN	54443	broad.mit.edu	37	chr7	36483457	36483457	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttattggacttatccagatGatgagaaacgcaaggtaatt	9	6	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36483457	A	A	36483457	3	1	2	1	0	0	0	0	1	0	0	0	694	1290	45	4	3150	4	ANLN	7	36483457	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	162815	36483457	122655206	285	757											
POLM	27434	broad.mit.edu	37	chr7	44116296	44116296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcggatgatcacccgctcCgggacggtgtggcccatgga	14	13	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44116296	T	T	44116296	1	4	2	0	1	0	0	0	0	0	0	0	12301	667	23	4		4	POLM	7	44116296	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	7632839	44116296	115022367	286	758											
TNS3	64759	broad.mit.edu	37	chr7	47463613	47463613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcatttaggtgtcgggaCagaggagatgcctcttctgt	12	7	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47463613	A	A	47463613	1	1	2	0	1	0	0	0	0	0	0	0	16467	493	17	3		3	TNS3	7	47463613	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3347317	47463613	111675050	287	759											
HIP1	3092	broad.mit.edu	37	chr7	75187579	75187579	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtattgtaaaggaccaaGgtgaggagtctaacctagca	11	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75187579	A	A	75187579	1	1	2	0	1	0	0	0	0	0	0	0	7181	1015	35	4		4	HIP1	7	75187579	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	27723966	75187579	83951084	288	760											
PCLO	27445	broad.mit.edu	37	chr7	82764745	82764745	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatgaagggttggttgtttCactagtggtggtggcttttt	14	5	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82764745	T	T	82764745	2	4	2	1	0	0	0	0	0	0	0	1	11677	813	29	4		4	PCLO	7	82764745	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	7577166	82764745	76373918	289	761											
C7orf64	84060	broad.mit.edu	37	chr7	92164123	92164123	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaactgcaggagcgcaaaAgaagaagagaagatgatcgt	12	7	0	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92164123	G	G	92164123	3	3	2	1	0	0	0	0	1	0	0	0	2435	64	3	5	870	5	C7orf64	7	92164123	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	9399378	92164123	66974540	290	762											
TECPR1	25851	broad.mit.edu	37	chr7	97870673	97870673	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaccgtccagatctcactCcctgccccctaccccggcca	6	22	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97870673	A	A	97870673	1	1	2	0	1	0	0	0	0	0	0	0	15865	870	30	3		3	TECPR1	7	97870673	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5706550	97870673	61267990	291	763											
CYP3A43	64816	broad.mit.edu	37	chr7	99457661	99457661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagaaggtgaagcctcagCaagaatgcctcctcaccact	11	12	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99457661	A	A	99457661	1	1	2	0	1	0	0	0	0	0	0	0	4212	725	25	3		3	CYP3A43	7	99457661	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1586988	99457661	59681002	292	764											
SERPINE1	5054	broad.mit.edu	37	chr7	100771819	100771819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcagcaggtggcgcagGcctccaaggaccgcaacgtg	14	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100771819	T	T	100771819	3	4	2	1	0	0	0	0	1	0	0	0	14224	1203	42	3	147	3	SERPINE1	7	100771819	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1314158	100771819	58366844	293	765											
PRKRIP1	79706	broad.mit.edu	37	chr7	102047968	102047968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtggtgcccacttttcttGgctgtagcttctttcttctt	9	10	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102047968	T	T	102047968	1	4	2	0	1	0	0	0	0	0	0	0	12631	1363	47	2		2	PRKRIP1	7	102047968	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1276149	102047968	57090695	294	766											
RELN	5649	broad.mit.edu	37	chr7	103126853	103126853	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcgtgactgaaaacagaGcagtcatcacctagaggaca	11	9	2	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103126853	T	T	103126853	4	4	2	1	0	0	0	0	0	1	0	0	13328	963	34	3	628	3	RELN	7	103126853	Nonsense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1078885	103126853	56011810	295	767											
GPR22	2845	broad.mit.edu	37	chr7	107115753	107115753	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaacaaaaaaattaccttTgaagatagtgaaataagaga	7	3	0	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107115753	A	A	107115753	3	1	2	1	0	0	0	0	1	0	0	0	6747	1809	63	5	1250	5	GPR22	7	107115753	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	3988900	107115753	52022910	296	768											
PTPRZ1	5803	broad.mit.edu	37	chr7	121684368	121684368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcttgtgtgggtcttcccCcattctgtaaaactctcctt	6	12	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121684368	A	A	121684368	1	1	2	0	1	0	0	0	0	0	0	0	12922	638	22	2		2	PTPRZ1	7	121684368	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	14568615	121684368	37454295	297	769											
PLXNA4	91584	broad.mit.edu	37	chr7	131888169	131888169	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgttgatctccatcccttCataggaatactgcagccagg	9	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131888169	A	A	131888169	4	1	2	1	0	0	0	0	0	1	0	0	12217	835	29	3	3464	3	PLXNA4	7	131888169	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	10203801	131888169	27250494	298	770											
LRGUK	136332	broad.mit.edu	37	chr7	133948536	133948536	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttatatcatgcaacacTtattctctttgtaccaagaa	5	9	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133948536	G	G	133948536	1	3	2	0	1	0	0	0	0	0	0	0	9030	1624	56	5		5	LRGUK	7	133948536	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	2060367	133948536	25190127	299	771											
DENND2A	27147	broad.mit.edu	37	chr7	140301877	140301877	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcctttattcctctccttCtctgtgctctctgttcctgg	6	15	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140301877	T	T	140301877	2	4	2	1	0	0	0	0	0	0	0	1	4469	912	32	4		4	DENND2A	7	140301877	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	6353341	140301877	18836786	300	772											
BRAF	673	broad.mit.edu	37	chr7	140434413	140434413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcagtggacaggaaacGcaccatatccccctgcctgg	10	13	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140434413	T	T	140434413	3	4	2	1	0	0	0	0	1	0	0	0	1505	1087	38	3	19	3	BRAF	7	140434413	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	132536	140434413	18704250	301	773											
GIMAP2	26157	broad.mit.edu	37	chr7	150389570	150389570	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttgcagcaaaagtcagGgaagctggggaaatagagag	15	5	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150389570	T	T	150389570	4	4	2	1	0	0	0	0	0	1	0	0	6444	1233	43	2	202	2	GIMAP2	7	150389570	Nonsense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	9955157	150389570	8749093	302	774											
ABCF2	10061	broad.mit.edu	37	chr7	150916359	150916359	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacttggccctggctctaaGgctgtgcagtaagaagagag	13	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150916359	A	A	150916359	1	1	2	0	1	0	0	0	0	0	0	0	66	1015	35	4		4	ABCF2	7	150916359	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	526789	150916359	8222304	303	775											
MLL3	58508	broad.mit.edu	37	chr7	151962157	151962157	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactttgcactcaggacattGccaacctgcacgttttaatg	7	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151962157	C	C	151962157	3	2	2	1	0	0	0	0	1	0	0	0	9715	1328	46	4	13793	4	MLL3	7	151962157	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1045798	151962157	7176506	304	776											
PTPRN2	5799	broad.mit.edu	37	chr7	157414082	157414082	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggccagggagcggttcttGggcacgttctcctccctctg	13	14	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157414082	T	T	157414082	2	4	2	1	0	0	0	0	0	0	0	1	12916	1335	47	2		2	PTPRN2	7	157414082	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	5451925	157414082	1724581	305	777											
DLGAP2	9228	broad.mit.edu	37	chr8	1497520	1497520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagctggtggagctcggacGacaacctggacagcgacagc	15	12	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1497520	T	T	1497520	3	4	2	1	0	0	0	0	1	0	0	0	4600	1058	37	3	663	3	DLGAP2	8	1497520	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08		1497520	144866502	306	778											
DEFA4	1669	broad.mit.edu	37	chr8	6794176	6794176	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctaagtgacatccaccattGagatgtgattccagagccca	8	12	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6794176	C	C	6794176	1	2	2	0	1	0	0	0	0	0	0	0	4424	1305	45	4		4	DEFA4	8	6794176	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	5296656	6794176	139569846	307	779											
RP1L1	94137	broad.mit.edu	37	chr8	10470214	10470214	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcaggaggactctggctccGagccctcggggaggccggtg	18	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10470214	T	T	10470214	4	4	2	1	0	0	0	0	0	1	0	0	13644	1059	37	3	5812	3	RP1L1	8	10470214	Nonsense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3676038	10470214	135893808	308	780											
C8orf74	203076	broad.mit.edu	37	chr8	10555360	10555360	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagggacttgtggatccacGagcagcaggtggccacactg	14	11	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10555360	T	T	10555360	4	4	2	1	0	0	0	0	0	1	0	0	2462	1059	37	3	503	3	C8orf74	8	10555360	Nonsense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	85146	10555360	135808662	309	781											
FAM86B2	653333	broad.mit.edu	37	chr8	12287848	12287848	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagggggaggagggtgcCtttctcataccagcaaatag	15	7	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12287848	A	A	12287848	1	1	2	0	1	0	0	0	0	0	0	0	5698	696	24	2		2	FAM86B2	8	12287848	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1732488	12287848	134076174	310	782											
FGL1	2267	broad.mit.edu	37	chr8	17726037	17726037	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaactccattacaactAtgctcataagacatcaaacc	2	13	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17726037	G	G	17726037	1	3	2	0	1	0	0	0	0	0	0	0	5929	464	16	5		5	FGL1	8	17726037	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	5438189	17726037	128637985	311	783											
ASAH1	427	broad.mit.edu	37	chr8	17933143	17933143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaataacaaatgcttgcCaacggaataagcaatttcaa	6	7	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17933143	A	A	17933143	1	1	2	0	1	0	0	0	0	0	0	0	1010	609	21	2		2	ASAH1	8	17933143	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	207106	17933143	128430879	312	784											
NEFM	4741	broad.mit.edu	37	chr8	24771756	24771756	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagctgggcgacgcgtaCgaccaggagatccgcgagct	15	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24771756	A	A	24771756	4	1	2	1	0	0	0	0	0	1	0	0	10411	547	19	3	452	3	NEFM	8	24771756	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6838613	24771756	121592266	313	785											
C8orf80	389643	broad.mit.edu	37	chr8	27918183	27918183	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagttcctgaggaccggttCcctaatgtatcccttaagcc	8	13	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27918183	A	A	27918183	1	1	2	0	1	0	0	0	0	0	0	0	2465	870	30	3		3	C8orf80	8	27918183	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3146427	27918183	118445839	314	786											
TEX15	56154	broad.mit.edu	37	chr8	30704102	30704102	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatttctccatcttccttaTttatttccggttttgtggct	6	9	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30704102	A	A	30704102	3	1	2	1	0	0	0	0	1	0	0	0	15901	1493	52	5	5953	5	TEX15	8	30704102	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	2785919	30704102	115659920	315	787											
LETM2	137994	broad.mit.edu	37	chr8	38264754	38264754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaggttccagattttgcCttttgaatcctgtgccagga	9	8	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38264754	A	A	38264754	1	1	2	0	1	0	0	0	0	0	0	0	8807	696	24	2		2	LETM2	8	38264754	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	7560652	38264754	108099268	316	788											
ADAM9	8754	broad.mit.edu	37	chr8	38884248	38884248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgttgctcatgaattggGtcataatcttggaatgaatc	9	6	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38884248	T	T	38884248	3	4	2	1	0	0	0	0	1	0	0	0	253	1261	44	3	1091	3	ADAM9	8	38884248	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	619494	38884248	107479774	317	789											
ADAM2	2515	broad.mit.edu	37	chr8	39624713	39624713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttcagcacagtttgaacCggctttaaatctacatgtgg	8	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39624713	A	A	39624713	3	1	2	1	0	0	0	0	1	0	0	0	241	652	23	1	969	1	ADAM2	8	39624713	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	740465	39624713	106739309	318	790											
CLVS1	157807	broad.mit.edu	37	chr8	62411997	62411997	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtttgtaattctgtctttttCcctcccctcttgttagatct	5	11	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62411997	A	A	62411997	1	1	2	0	1	0	0	0	0	0	0	0	3603	870	30	3		3	CLVS1	8	62411997	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	22787284	62411997	83952025	319	791											
CPA6	57094	broad.mit.edu	37	chr8	68430094	68430094	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgataaataacctaaatAcaactaccatttggttcagt	4	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68430094	G	G	68430094	1	3	2	0	1	0	0	0	0	0	0	0	3826	406	14	5		5	CPA6	8	68430094	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	6018097	68430094	77933928	320	792											
PREX2	80243	broad.mit.edu	37	chr8	69002766	69002766	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatatatcatacaaatgaatCttattcctgaaatttgtttt	3	5	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69002766	A	A	69002766	1	1	2	0	1	0	0	0	0	0	0	0	12583	928	32	3		3	PREX2	8	69002766	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	572672	69002766	77361256	321	793											
SLCO5A1	81796	broad.mit.edu	37	chr8	70585057	70585057	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagttgtttctcaagtcgCcattttcaattcaaccaaca	4	12	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70585057	T	T	70585057	1	4	2	0	1	0	0	0	0	0	0	0	14845	754	26	4		4	SLCO5A1	8	70585057	3'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	1582291	70585057	75778965	322	794											
TRPA1	8989	broad.mit.edu	37	chr8	72967643	72967643	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggctaattaaagaaattaTataaacactccaatcatata	3	6	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72967643	C	C	72967643	1	2	2	0	1	0	0	0	0	0	0	0	16702	1421	49	5		5	TRPA1	8	72967643	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	2382586	72967643	73396379	323	795											
TRPA1	8989	broad.mit.edu	37	chr8	72984007	72984007	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttggccttctgctgcagcAtaatgcaagaagaaggtgtc	11	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72984007	T	T	72984007	4	4	2	1	0	0	0	0	0	1	0	0	16702	224	8	5	3256	5	TRPA1	8	72984007	Nonsense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	16364	72984007	73380015	324	796											
ZNF704	619279	broad.mit.edu	37	chr8	81599369	81599369	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccacagaaagggggtgtaGgtccaaggttaagctcacac	12	9	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81599369	A	A	81599369	1	1	2	0	1	0	0	0	0	0	0	0	18234	1015	35	4		4	ZNF704	8	81599369	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	8615362	81599369	64764653	325	797											
FAM82B	51115	broad.mit.edu	37	chr8	87498776	87498776	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgcatactctagggcttcAtacaccaatagctttttctc	5	11	3	0	rs144513651		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87498776	T	T	87498776	4	4	2	1	0	0	0	0	0	1	0	0	5685	224	8	5	540	5	FAM82B	8	87498776	Nonsense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	5899407	87498776	58865246	326	798											
C8orf38	137682	broad.mit.edu	37	chr8	96064465	96064465	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttcttcagacggtaagtAgattaacagagaaggctgta	10	6	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96064465	T	T	96064465	1	4	2	0	1	0	0	0	0	0	0	0	2450	435	15	5		5	C8orf38	8	96064465	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	8565689	96064465	50299557	327	799											
PGCP	10404	broad.mit.edu	37	chr8	97797349	97797349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttctggttgatactgttgGacccagactgagtggctcca	11	10	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97797349	T	T	97797349	3	4	2	1	0	0	0	0	1	0	0	0	11881	1174	41	3	226	3	PGCP	8	97797349	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1732884	97797349	48566673	328	800											
NIPAL2	79815	broad.mit.edu	37	chr8	99264759	99264759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccataggctgcaaagttcCccgtctctcccacggccatc	7	17	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99264759	A	A	99264759	3	1	2	1	0	0	0	0	1	0	0	0	10520	623	22	2	838	2	NIPAL2	8	99264759	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1467410	99264759	47099263	329	801											
RIMS2	9699	broad.mit.edu	37	chr8	104955095	104955095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattgccacttccccaccCttctccatatatgccacgaa	3	17	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104955095	A	A	104955095	3	1	2	1	0	0	0	0	1	0	0	0	13479	681	24	2	2822	2	RIMS2	8	104955095	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	5690336	104955095	41408927	330	802											
TM7SF4	81501	broad.mit.edu	37	chr8	105360725	105360725	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttacgaaggtcagaggaCattcaaaagtaatttctgac	8	8	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105360725	T	T	105360725	1	4	2	0	1	0	0	0	0	0	0	0	16099	493	17	4		4	TM7SF4	8	105360725	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	405630	105360725	41003297	331	803											
ANGPT1	284	broad.mit.edu	37	chr8	108264099	108264099	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctttcaaaaatctaaaggtCgaatcatcatagttgtggaa	8	6	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108264099	T	T	108264099	3	4	2	1	0	0	0	0	1	0	0	0	610	884	31	4	19	4	ANGPT1	8	108264099	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2903374	108264099	38099923	332	804											
CSMD3	114788	broad.mit.edu	37	chr8	113314033	113314033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgtacctaggcatctgGtttcagattcactccaaaga	7	10	4	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113314033	T	T	113314033	3	4	2	1	0	0	0	0	1	0	0	0	3980	1261	44	3	2770	3	CSMD3	8	113314033	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	5049934	113314033	33049989	333	805											
CSMD3	114788	broad.mit.edu	37	chr8	113648999	113648999	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaaccatgcaactccatGgacagtgactacacatacaa	7	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113648999	T	T	113648999	1	4	2	0	1	0	0	0	0	0	0	0	3980	1363	47	2		2	CSMD3	8	113648999	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	334966	113648999	32715023	334	806											
CSMD3	114788	broad.mit.edu	37	chr8	113702259	113702259	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagggtgtaccaggatcacCacaactttctttctcaattt	6	10	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113702259	G	G	113702259	3	3	2	1	0	0	0	0	1	0	0	0	3980	594	21	4	9362	4	CSMD3	8	113702259	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	53260	113702259	32661763	335	807											
CSMD3	114788	broad.mit.edu	37	chr8	113988072	113988072	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataacatccaatacctctatGagtaacaactgcaagctctt	4	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113988072	T	T	113988072	3	4	2	1	0	0	0	0	1	0	0	0	3980	1290	45	3	10047	3	CSMD3	8	113988072	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	285813	113988072	32375950	336	808											
RAD21	5885	broad.mit.edu	37	chr8	117868465	117868465	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttggaacaagtgttgtttGatcagtcatggttggcattg	12	4	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117868465	C	C	117868465	3	2	2	1	0	0	0	0	1	0	0	0	13089	1299	45	4	1046	4	RAD21	8	117868465	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3880393	117868465	28495557	337	809											
NOV	4856	broad.mit.edu	37	chr8	120431528	120431528	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatgtgagatgctgaaacaGactcggctctgcatggtgcg	13	9	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120431528	T	T	120431528	3	4	2	1	0	0	0	0	1	0	0	0	10648	933	33	3	734	3	NOV	8	120431528	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2563063	120431528	25932494	338	810											
ENPP2	5168	broad.mit.edu	37	chr8	120605878	120605878	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatccccatcttaaagaaagCggggatgaggttaagaatgg	12	6	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120605878	T	T	120605878	1	4	2	0	1	0	0	0	0	0	0	0	5172	783	27	4		4	ENPP2	8	120605878	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	174350	120605878	25758144	339	811											
DEPDC6	64798	broad.mit.edu	37	chr8	120941887	120941887	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactgaggacttactctgtaCcaagtactatgtaactattt	6	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120941887	T	T	120941887	1	4	2	0	1	0	0	0	0	0	0	0	4483	522	18	4		4	DEPDC6	8	120941887	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	336009	120941887	25422135	340	812											
TG	7038	broad.mit.edu	37	chr8	133948143	133948143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggttggcttaggcccgcGgtggcttcacacggtcatgt	15	11	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133948143	T	T	133948143	1	4	2	0	1	0	0	0	0	0	0	0	15936	1131	39	1		1	TG	8	133948143	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	13006256	133948143	12415879	341	813											
FLJ43860	389690	broad.mit.edu	37	chr8	142469694	142469694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataccctactgtgaatggcCacagctgtgaagttaggaaa	10	8	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142469694	A	A	142469694	1	1	2	0	1	0	0	0	0	0	0	0	5987	609	21	2		2	FLJ43860	8	142469694	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	8521551	142469694	3894328	342	814											
SMARCA2	6595	broad.mit.edu	37	chr9	2101582	2101582	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttaaaggaatcctttgctGaacacctaggctattcaaat	6	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2101582	C	C	2101582	3	2	2	1	0	0	0	0	1	0	0	0	14883	1291	45	4	3173	4	SMARCA2	9	2101582	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08		2101582	139111849	343	815											
RFX3	5991	broad.mit.edu	37	chr9	3263012	3263012	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtgttctgaagcactgcacGagctgcctgggccaggtgat	14	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3263012	C	C	3263012	3	2	2	1	0	0	0	0	1	0	0	0	13372	1058	37	4	897	4	RFX3	9	3263012	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1161430	3263012	137950419	344	816											
PTPRD	5789	broad.mit.edu	37	chr9	8484300	8484300	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaaatgaatatgatttctCaggcttcaggttgacaatta	7	7	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8484300	G	G	8484300	3	3	2	1	0	0	0	0	1	0	0	0	12907	835	29	4	2639	4	PTPRD	9	8484300	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	5221288	8484300	132729131	345	817											
MPDZ	8777	broad.mit.edu	37	chr9	13188859	13188859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctacagcttcctcaagaCtgctgttttccaagttaaca	5	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13188859	A	A	13188859	3	1	2	1	0	0	0	0	1	0	0	0	9816	565	20	3	3957	3	MPDZ	9	13188859	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	4704559	13188859	128024572	346	818											
C9orf93	203238	broad.mit.edu	37	chr9	15784550	15784550	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtgcatgtgaagaacTaaataatgcattacttcggg	10	5	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15784550	G	G	15784550	3	3	2	1	0	0	0	0	1	0	0	0	2532	1522	53	5	3203	5	C9orf93	9	15784550	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	2595691	15784550	125428881	347	819											
BNC2	54796	broad.mit.edu	37	chr9	16436214	16436214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagctccaccatcattggGgtcatcatcttcatcatcaa	5	14	7	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16436214	T	T	16436214	3	4	2	1	0	0	0	0	1	0	0	0	1481	1232	43	2	1329	2	BNC2	9	16436214	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	651664	16436214	124777217	348	820											
CNTLN	54875	broad.mit.edu	37	chr9	17395095	17395095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcattaacttagctctgtGgtggggacactgcgcatatg	11	9	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17395095	T	T	17395095	1	4	2	0	1	0	0	0	0	0	0	0	3671	1363	47	2		2	CNTLN	9	17395095	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	958881	17395095	123818336	349	821											
NOL6	65083	broad.mit.edu	37	chr9	33473885	33473885	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttcagattctagccgggTctatacctcatagcttccca	6	14	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33473885	A	A	33473885	1	1	2	0	1	0	0	0	0	0	0	0	10620	1682	58	5		5	NOL6	9	33473885	5'UTR	SNP	T	TCGA-05-4249-01A-01D-1105-08	16078790	33473885	107739546	350	822											
ARID3C	138715	broad.mit.edu	37	chr9	34627853	34627853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttcttcagcatcttcCtcttcctcagccccaacatt	2	17	7	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34627853	A	A	34627853	3	1	2	1	0	0	0	0	1	0	0	0	920	680	24	2	1106	2	ARID3C	9	34627853	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1153968	34627853	106585578	351	823											
PIGO	84720	broad.mit.edu	37	chr9	35093361	35093361	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtattcatgaggatgctgTaatggtaacatgggctgatt	13	4	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35093361	A	A	35093361	1	1	2	0	1	0	0	0	0	0	0	0	11989	1653	57	5		5	PIGO	9	35093361	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	465508	35093361	106120070	352	824											
TRPM3	80036	broad.mit.edu	37	chr9	73151524	73151524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatggtgtggtacatcggaGgctctgagtcccaggggttt	15	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73151524	T	T	73151524	3	4	2	1	0	0	0	0	1	0	0	0	16712	1000	35	2	658	2	TRPM3	9	73151524	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	38058163	73151524	68061907	353	825											
TRPM3	80036	broad.mit.edu	37	chr9	73218374	73218374	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaagagcatcaggtatcCgatatacgccagctgtaagg	12	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73218374	A	A	73218374	4	1	2	1	0	0	0	0	0	1	0	0	16712	661	23	1	2507	1	TRPM3	9	73218374	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	66850	73218374	67995057	354	826											
TMEM2	23670	broad.mit.edu	37	chr9	74313084	74313084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagtaactgtggccatgCctgtggcttttggctttgag	13	8	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74313084	A	A	74313084	3	1	2	1	0	0	0	0	1	0	0	0	16244	738	26	3	757	3	TMEM2	9	74313084	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1094710	74313084	66900347	355	827											
GCNT1	2650	broad.mit.edu	37	chr9	79118029	79118029	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaacaacctggaaacGgagaggatgccatcccataa	11	9	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79118029	T	T	79118029	2	4	2	1	0	0	0	0	0	0	0	1	6362	1103	39	1		1	GCNT1	9	79118029	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	4804945	79118029	62095402	356	828											
C9orf64	84267	broad.mit.edu	37	chr9	86571450	86571450	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggcgggccaaactcttcCcgccctaggcgggtcaaggt	13	16	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86571450	A	A	86571450	1	1	2	0	1	0	0	0	0	0	0	0	2515	638	22	2		2	C9orf64	9	86571450	5'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	7453421	86571450	54641981	357	829											
HNRNPK	3190	broad.mit.edu	37	chr9	86593299	86593299	+	Translation_Start_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaacgtaccagttattataTatccttgcagagcagaactg	8	8	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86593299	C	C	86593299	1	2	2	1	0	0	0	0	0	0	0	0	7336	1421	49	5		5	HNRNPK	9	86593299	Translation_Start_Site	SNP	T	TCGA-05-4249-01A-01D-1105-08	21849	86593299	54620132	358	830											
ISCA1	81689	broad.mit.edu	37	chr9	88881102	88881103	+	Frame_Shift_Ins	INS	-	A	A													tcttttcgatgaatactctgINSactccttggagaaaagaaaa							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88881103	A	A	88881102	7	5	2	1	0	1	1	0	0	0	0	0	7919	1277	45	0	147	0	ISCA1	9	88881102	Frame_Shift_Ins	INS	-	TCGA-05-4249-01A-01D-1105-08	2287803	88881102	52332329	359	831											
FGD3	89846	broad.mit.edu	37	chr9	95773622	95773622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggccaggggcccttgtGggccagcccctttgccgcta	15	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95773622	T	T	95773622	1	4	2	0	1	0	0	0	0	0	0	0	5891	1363	47	2		2	FGD3	9	95773622	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	6892520	95773622	45439809	360	832											
MURC	347273	broad.mit.edu	37	chr9	103348672	103348672	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctttaaaagttacttttaAatctcaggtgaaagtagagg	9	5	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103348672	T	T	103348672	3	4	2	1	0	0	0	0	1	0	0	0	10081	14	1	5	1040	5	MURC	9	103348672	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	7575050	103348672	37864759	361	833											
ALDOB	229	broad.mit.edu	37	chr9	104189921	104189921	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgctctgagaggccatcaAgccctgcaagtcacaaaaga	10	12	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104189921	T	T	104189921	3	4	2	1	0	0	0	0	1	0	0	0	508	72	3	5	731	5	ALDOB	9	104189921	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	841249	104189921	37023510	362	834											
OR13C2	392376	broad.mit.edu	37	chr9	107367202	107367202	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaacaggtagaggaagctTtgcttctcccctcggaagag	12	10	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107367202	A	A	107367202	3	1	2	1	0	0	0	0	1	0	0	0	11028	1841	64	5	252	5	OR13C2	9	107367202	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	3177281	107367202	33846229	363	835											
ZNF483	158399	broad.mit.edu	37	chr9	114305028	114305028	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaattcacactggagaaAaaccatatttgtgtaatgat	8	5	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114305028	G	G	114305028	3	3	2	1	0	0	0	0	1	0	0	0	18063	15	1	5	1831	5	ZNF483	9	114305028	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	6937826	114305028	26908403	364	836											
ASTN2	23245	broad.mit.edu	37	chr9	119770520	119770520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaggtagctcccttcaCtcaccacgaagctgcttcct	7	16	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119770520	T	T	119770520	3	4	2	1	0	0	0	0	1	0	0	0	1069	565	20	4	2877	4	ASTN2	9	119770520	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	5465492	119770520	21442911	365	837											
SPTAN1	6709	broad.mit.edu	37	chr9	131329002	131329002	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attggtacttatctcagcgcAttttgtcatttcagaaaatg	7	7	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131329002	T	T	131329002	1	4	2	0	1	0	0	0	0	0	0	0	15235	232	8	5		5	SPTAN1	9	131329002	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	11558482	131329002	9884429	366	838											
METTL11A	28989	broad.mit.edu	37	chr9	132396294	132396294	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggccgcacgtgcggtgaCagggtccctctgataggtta	15	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132396294	G	G	132396294	1	3	2	0	1	0	0	0	0	0	0	0	9588	493	17	4		4	METTL11A	9	132396294	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1067292	132396294	8817137	367	839											
BAT2L1	84726	broad.mit.edu	37	chr9	134334625	134334625	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcggacgctaagcggactcGagaggaagggaaggactggg	19	7	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134334625	C	C	134334625	3	2	2	1	0	0	0	0	1	0	0	0	1325	1058	37	4	1324	4	BAT2L1	9	134334625	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1938331	134334625	6878806	368	840											
GFI1B	8328	broad.mit.edu	37	chr9	135865099	135865099	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagtcctgagcctgcacctGaccccccggggcctcatttc	9	19	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135865099	C	C	135865099	1	2	2	0	1	0	0	0	0	0	0	0	6404	1305	45	4		4	GFI1B	9	135865099	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1530474	135865099	5348332	369	841											
LCN9	392399	broad.mit.edu	37	chr9	138556120	138556120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacacttgaagaacggcaGcctaatatttgatttcgaat	8	7	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138556120	T	T	138556120	3	4	2	1	0	0	0	0	1	0	0	0	8759	971	34	3	215	3	LCN9	9	138556120	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2691021	138556120	2657311	370	842											
FBXO18	84893	broad.mit.edu	37	chr10	5955787	5955787	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaagttaaagaggagcCatctgtctggccagggtatg	12	8	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5955787	T	T	5955787	3	4	2	1	0	0	0	0	1	0	0	0	5788	594	21	4	1477	4	FBXO18	10	5955787	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08		5955787	129578960	371	843											
ITIH2	3698	broad.mit.edu	37	chr10	7759743	7759743	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctggacggctggccaaaCacttagaggtaagcctggat	12	10	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7759743	T	T	7759743	3	4	2	1	0	0	0	0	1	0	0	0	7974	478	17	4	644	4	ITIH2	10	7759743	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1803956	7759743	127775004	372	844											
MCM10	55388	broad.mit.edu	37	chr10	13251196	13251196	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgctaataatgtggaaccAtctcctattaaaatattttc	4	8	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13251196	T	T	13251196	1	4	2	0	1	0	0	0	0	0	0	0	9478	232	8	5		5	MCM10	10	13251196	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	5491453	13251196	122283551	373	845											
SPAG6	9576	broad.mit.edu	37	chr10	22700146	22700146	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacgttcaatattagaatgtAgtttttctgttttcacatct	5	6	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22700146	T	T	22700146	1	4	2	0	1	0	0	0	0	0	0	0	15098	435	15	5		5	SPAG6	10	22700146	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	9448950	22700146	112834601	374	846											
ARMC3	219681	broad.mit.edu	37	chr10	23270392	23270392	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcagcaatgtgtgagaattCaggcagcaaagattttttca	9	6	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23270392	A	A	23270392	4	1	2	1	0	0	0	0	0	1	0	0	956	838	29	3	1070	3	ARMC3	10	23270392	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	570246	23270392	112264355	375	847											
GAD2	2572	broad.mit.edu	37	chr10	26534843	26534843	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaaatatatatatttttTttacagagtcatttttctct	3	5	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26534843	C	C	26534843	1	2	2	0	1	0	0	0	0	0	0	0	6240	1856	64	5		5	GAD2	10	26534843	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	3264451	26534843	108999904	376	848											
OGDHL	55753	broad.mit.edu	37	chr10	50959844	50959844	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccctggagcaggacctccAgccacttggccctccaggtg	12	16	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50959844	G	G	50959844	1	3	2	0	1	0	0	0	0	0	0	0	10935	203	7	5		5	OGDHL	10	50959844	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	24425001	50959844	84574903	377	849											
A1CF	29974	broad.mit.edu	37	chr10	52580287	52580287	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttggatgtaatctgcaTatttttttctttcttctacc	4	8	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52580287	C	C	52580287	1	2	2	0	1	0	0	0	0	0	0	0	2	1421	49	5		5	A1CF	10	52580287	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	1620443	52580287	82954460	378	850											
PCDH15	65217	broad.mit.edu	37	chr10	56360356	56360356	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtcgaagagcatgaagaGacctttgaggagaaaccagt	13	6	0	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56360356	C	C	56360356	1	2	2	0	1	0	0	0	0	0	0	0	11605	957	33	4		4	PCDH15	10	56360356	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3780069	56360356	79174391	379	851											
ZNF365	22891	broad.mit.edu	37	chr10	64239687	64239687	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtgattctggatgaggActtggatcaagagaatcgca	13	5	2	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64239687	C	C	64239687	1	2	2	0	1	0	0	0	0	0	0	0	17995	290	10	5		5	ZNF365	10	64239687	3'UTR	SNP	A	TCGA-05-4249-01A-01D-1105-08	7879331	64239687	71295060	380	852											
PBLD	64081	broad.mit.edu	37	chr10	70048359	70048375	+	Frame_Shift_Del	DEL	CCTGTGTTTTCAACTTG	-	-													gaataagccctttcaccttcCctgtgttttcaacttgcagc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70048375	-	-	70048359	7	5	2	1	0	1	0	1	0	0	0	0	11583	623	22	0	395	0	PBLD	10	70048359	Frame_Shift_Del	DEL	CCTGTGTTTTCAACTTG	TCGA-05-4249-01A-01D-1105-08	5808672	70048359	65486388	381	853											
HKDC1	80201	broad.mit.edu	37	chr10	71020806	71020806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggatctggatcttgctcCatgcgtagctccaaagcctg	10	12	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71020806	A	A	71020806	1	1	2	0	1	0	0	0	0	0	0	0	7260	609	21	2		2	HKDC1	10	71020806	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	972447	71020806	64513941	382	854											
PSAP	5660	broad.mit.edu	37	chr10	73579275	73579275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttctcaagagcagccaGgatctcctgcttggtgctgt	11	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73579275	T	T	73579275	3	4	2	1	0	0	0	0	1	0	0	0	12749	991	35	2	293	2	PSAP	10	73579275	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2558469	73579275	61955472	383	855											
ECD	11319	broad.mit.edu	37	chr10	74899557	74899557	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagaatagtaatcataaaTacatagtattttaaggttgg	7	3	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74899557	C	C	74899557	1	2	2	0	1	0	0	0	0	0	0	0	4928	1421	49	5		5	ECD	10	74899557	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	1320282	74899557	60635190	384	856											
PPP3CB	5532	broad.mit.edu	37	chr10	75206339	75206339	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgcagctgaacctactttCaatggaataaatagagagaa	9	7	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75206339	G	G	75206339	1	3	2	0	1	0	0	0	0	0	0	0	12499	841	29	4		4	PPP3CB	10	75206339	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	306782	75206339	60328408	385	857											
USP54	159195	broad.mit.edu	37	chr10	75258547	75258547	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggggcatatctactcttCgaggaccaggggttcgggac	15	10	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75258547	T	T	75258547	3	4	2	1	0	0	0	0	1	0	0	0	17212	884	31	4	163	4	USP54	10	75258547	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	52208	75258547	60276200	386	858											
IFIT2	3433	broad.mit.edu	37	chr10	91067141	91067141	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatggggaatgaagaatagaGatgtggtgcccactaggcta	14	5	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91067141	C	C	91067141	1	2	2	0	1	0	0	0	0	0	0	0	7593	957	33	4		4	IFIT2	10	91067141	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	15808594	91067141	44467606	387	859											
MYOF	26509	broad.mit.edu	37	chr10	95082779	95082779	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attcagtaatgaaaactcacGaaggagagagtctgtttccc	9	8	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95082779	A	A	95082779	1	1	2	0	1	0	0	0	0	0	0	0	10183	1073	37	4		4	MYOF	10	95082779	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	4015638	95082779	40451968	388	860											
PLCE1	51196	broad.mit.edu	37	chr10	95791385	95791385	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattttcattatgaagttgaCagaagaatgtcagacacttt	7	6	2	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95791385	T	T	95791385	2	4	2	1	0	0	0	0	0	0	0	1	12129	477	17	4		4	PLCE1	10	95791385	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	708606	95791385	39743362	389	861											
CYP2C8	1558	broad.mit.edu	37	chr10	96827275	96827275	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagctgacacagaaataTgtgcacctaccaagtccttt	6	12	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96827275	C	C	96827275	1	2	2	0	1	0	0	0	0	0	0	0	4200	1479	51	5		5	CYP2C8	10	96827275	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	1035890	96827275	38707472	390	862											
TLL2	7093	broad.mit.edu	37	chr10	98273371	98273371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgggcgctccccgagtccCccggcgccgcgaggcagcgg	16	19	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98273371	A	A	98273371	2	1	2	1	0	0	0	0	0	0	0	1	16069	610	22	2		2	TLL2	10	98273371	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	1446096	98273371	37261376	391	863											
PIK3AP1	118788	broad.mit.edu	37	chr10	98469537	98469537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgctgcaccagctccgCggacagcagcaccacgacac	11	16	0	0	rs146527410	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98469537	T	T	98469537	3	4	2	1	0	0	0	0	1	0	0	0	12003	768	27	4	2264	4	PIK3AP1	10	98469537	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	196166	98469537	37065210	392	864											
SLIT1	6585	broad.mit.edu	37	chr10	98823918	98823918	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgctcccagctgccccggctGactcacaaggtccgtagctt	10	17	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98823918	A	A	98823918	1	1	2	0	1	0	0	0	0	0	0	0	14853	1305	45	4		4	SLIT1	10	98823918	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	354381	98823918	36710829	393	865											
ABCC2	1244	broad.mit.edu	37	chr10	101606844	101606844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggccagcctgcaacttGggttatcccacgaagtgaca	11	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101606844	T	T	101606844	3	4	2	1	0	0	0	0	1	0	0	0	53	1348	47	2	4391	2	ABCC2	10	101606844	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2782926	101606844	33927903	394	866											
NPM3	10360	broad.mit.edu	37	chr10	103541717	103541717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcttacagggaccatgacCtcccagtgcttatgggctag	12	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103541717	A	A	103541717	1	1	2	0	1	0	0	0	0	0	0	0	10684	696	24	2		2	NPM3	10	103541717	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1934873	103541717	31993030	395	867											
NFKB2	4791	broad.mit.edu	37	chr10	104159992	104159992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgggaggggttggaagGcaagtgggtctcgggcctgg	23	5	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104159992	T	T	104159992	1	4	2	0	1	0	0	0	0	0	0	0	10471	1218	42	3		3	NFKB2	10	104159992	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	618275	104159992	31374755	396	868											
NEURL	9148	broad.mit.edu	37	chr10	105330758	105330758	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacccgcacaccaagggctCccagatcctcatggacctca	7	19	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105330758	T	T	105330758	3	4	2	1	0	0	0	0	1	0	0	0	10440	855	30	4	221	4	NEURL	10	105330758	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1170766	105330758	30203989	397	869											
SORCS3	22986	broad.mit.edu	37	chr10	106974167	106974167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacaacaacacaatcaaCacaaaccactatcaattgtc	2	13	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106974167	A	A	106974167	1	1	2	0	1	0	0	0	0	0	0	0	15046	493	17	3		3	SORCS3	10	106974167	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1643409	106974167	28560580	398	870											
XPNPEP1	7511	broad.mit.edu	37	chr10	111628167	111628167	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaggactatctccaccTggaggcccaacaaatacagg	9	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111628167	A	A	111628167	1	1	2	0	1	0	0	0	0	0	0	0	17569	1595	55	5		5	XPNPEP1	10	111628167	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	4654000	111628167	23906580	399	871											
CHST15	51363	broad.mit.edu	37	chr10	125797915	125797915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcatgagccactgtaCccgacctgtttaattttttc	7	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125797915	A	A	125797915	1	1	2	0	1	0	0	0	0	0	0	0	3434	522	18	3		3	CHST15	10	125797915	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	14169748	125797915	9736832	400	872											
ADAM12	8038	broad.mit.edu	37	chr10	127724718	127724718	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtactgaaagcatacctgGgcctgcctaagtgcaggctt	11	10	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127724718	T	T	127724718	2	4	2	1	0	0	0	0	0	0	0	1	236	1219	43	2		2	ADAM12	10	127724718	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	1926803	127724718	7810029	401	873											
C10orf93	255352	broad.mit.edu	37	chr10	134754368	134754368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagatgagggagtgatcaCacgtgcatgaaaatcacaga	12	7	2	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134754368	A	A	134754368	1	1	2	0	1	0	0	0	0	0	0	0	1636	493	17	3		3	C10orf93	10	134754368	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	7029650	134754368	780379	402	874											
KNDC1	85442	broad.mit.edu	37	chr10	134997434	134997434	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctcctgtcgcgtgtgccGgagcctctctgctgtgggga	14	13	1	0	rs144320928		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134997434	A	A	134997434	3	1	2	1	0	0	0	0	1	0	0	0	8497	1116	39	4	584	4	KNDC1	10	134997434	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	243066	134997434	537313	403	875											
B4GALNT4	338707	broad.mit.edu	37	chr11	379830	379830	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccccaccgtagagtcagcGtcggctcagcgccccccccg	12	20	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	379830	A	A	379830	1	1	2	0	1	0	0	0	0	0	0	0	1274	1160	40	4		4	B4GALNT4	11	379830	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08		379830	134626686	404	876											
OR51D1	390038	broad.mit.edu	37	chr11	4661752	4661752	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttggagctgtcctctcgGagggcagcactcaaggcttt	13	10	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4661752	T	T	4661752	2	4	2	1	0	0	0	0	0	0	0	1	11187	1161	41	3		3	OR51D1	11	4661752	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	4281922	4661752	130344764	405	877											
C11orf42	160298	broad.mit.edu	37	chr11	6231940	6231940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgaaggagggagaaggCatgagaattaagtatgtgag	16	1	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6231940	A	A	6231940	1	1	2	0	1	0	0	0	0	0	0	0	1653	725	25	3		3	C11orf42	11	6231940	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1570188	6231940	128774576	406	878											
OR2AG1	144125	broad.mit.edu	37	chr11	6806427	6806428	+	Silent	DNP	CC	AA	AA													ctggctatcaccatggaagcCcggctccacatgcccatgta							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6806428	AA	AA	6806427	2	1	2	1	0	0	0	0	0	0	0	1	11078	610	22	2		2	OR2AG1	11	6806427	Silent	DNP	CC	TCGA-05-4249-01A-01D-1105-08	574487	6806427	128200089	407	879											
SBF2	81846	broad.mit.edu	37	chr11	9874111	9874117	+	Intron	DEL	GGAGTTA	-	-													tttaacatatcattaaaactGgagttagtgtctgtcaaagg							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9874117	-	-	9874111	6	5	2	0	1	1	0	1	0	0	0	0	13971	1363	47	0		0	SBF2	11	9874111	Intron	DEL	GGAGTTA	TCGA-05-4249-01A-01D-1105-08	3067684	9874111	125132405	408	880											
TEAD1	7003	broad.mit.edu	37	chr11	12901386	12901386	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaccttcccaggggcgccGggggtaagtcatgagctcag	15	13	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12901386	A	A	12901386	2	1	2	1	0	0	0	0	0	0	0	1	15860	1103	39	4		4	TEAD1	11	12901386	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	3027275	12901386	122105130	409	881											
INSC	387755	broad.mit.edu	37	chr11	15198538	15198538	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttatattttaactgcCtgttccccaagtcacattaa	5	10	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15198538	G	G	15198538	1	3	2	0	1	0	0	0	0	0	0	0	7834	696	24	4		4	INSC	11	15198538	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	2297152	15198538	119807978	410	882											
PLEKHA7	144100	broad.mit.edu	37	chr11	16838843	16838843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggattggccaggaccctggCgaggaagcgtctggtccaag	17	10	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16838843	A	A	16838843	3	1	2	1	0	0	0	0	1	0	0	0	12156	768	27	3	2047	3	PLEKHA7	11	16838843	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1640305	16838843	118167673	411	883											
ABCC8	6833	broad.mit.edu	37	chr11	17449426	17449426	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccatacctcgggggatacGaatggtgatgttggacagtg	16	7	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17449426	A	A	17449426	3	1	2	1	0	0	0	0	1	0	0	0	58	1058	37	4	2741	4	ABCC8	11	17449426	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	610583	17449426	117557090	412	884											
PRMT3	10196	broad.mit.edu	37	chr11	20486126	20486126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcttttacaaatttcaCtagcagtgcagttgattggc	8	8	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20486126	A	A	20486126	1	1	2	0	1	0	0	0	0	0	0	0	12644	580	20	3		3	PRMT3	11	20486126	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3036700	20486126	114520390	413	885											
NELL1	4745	broad.mit.edu	37	chr11	20982079	20982079	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagagtggttacatctctGtccagggagactctgcctac	11	11	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20982079	A	A	20982079	3	1	2	1	0	0	0	0	1	0	0	0	10428	1377	48	4	1319	4	NELL1	11	20982079	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	495953	20982079	114024437	414	886											
FIBIN	387758	broad.mit.edu	37	chr11	27016285	27016285	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagggggaggggagccAggttggcagcctgctgagcc	18	12	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016285	T	T	27016285	3	4	2	1	0	0	0	0	1	0	0	0	5942	188	7	5	214	5	FIBIN	11	27016285	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	6034206	27016285	107990231	415	887											
WT1	7490	broad.mit.edu	37	chr11	32410792	32410792	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacaagttcaactatcaagGcccgagtgaagtcatcacaa	8	11	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32410792	A	A	32410792	1	1	2	0	1	0	0	0	0	0	0	0	17535	1218	42	4		4	WT1	11	32410792	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	5394507	32410792	102595724	416	888											
PRR5L	79899	broad.mit.edu	37	chr11	36467789	36467789	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgtcttgaaccccacaTggtcggtggcagattcagta	12	9	2	2	rs112588084		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36467789	C	C	36467789	1	2	2	0	1	0	0	0	0	0	0	0	12708	1479	51	5		5	PRR5L	11	36467789	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	4056997	36467789	98538727	417	889											
FOLH1	2346	broad.mit.edu	37	chr11	49227605	49227605	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttgtccatataaactttcGaggatgtacttactataaga	6	7	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49227605	T	T	49227605	1	4	2	0	1	0	0	0	0	0	0	0	6037	1073	37	3		3	FOLH1	11	49227605	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	12759816	49227605	85778911	418	890											
SPRYD5	84767	broad.mit.edu	37	chr11	55656573	55656573	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattgattcagatagtgaTactgccttgtgctggttgta	10	5	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55656573	C	C	55656573	1	2	2	0	1	0	0	0	0	0	0	0	15229	1421	49	5		5	SPRYD5	11	55656573	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	6428968	55656573	79349943	419	891											
SPRYD5	84767	broad.mit.edu	37	chr11	55658605	55658605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttttaaaaattatttttGcagttgattttactctgcag	5	4	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55658605	T	T	55658605	1	4	2	0	1	0	0	0	0	0	0	0	15229	1334	46	3		3	SPRYD5	11	55658605	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	2032	55658605	79347911	420	892											
ZFP91	80829	broad.mit.edu	37	chr11	58385241	58385241	+	3'UTR	DEL	A	-	-													atttaaaagttaaaaaggacAaaaaaaaaatctaaagcatt					rs633713		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58385241	-	-	58385241	6	5	2	0	1	1	0	1	0	0	0	0	17781	145	5	0		0	ZFP91	11	58385241	3'UTR	DEL	A	TCGA-05-4249-01A-01D-1105-08	2726636	58385241	76621275	421	893											
OR5A2	219981	broad.mit.edu	37	chr11	59190046	59190046	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtaaagcaaggggttgcaGattgcagcataccggtcata	13	7	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59190046	C	C	59190046	3	2	2	1	0	0	0	0	1	0	0	0	11234	932	33	4	595	4	OR5A2	11	59190046	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	804805	59190046	75816470	422	894											
MS4A4A	51338	broad.mit.edu	37	chr11	60064740	60064740	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgtatggcatctaataCttatggaagtaaccctattt	8	6	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60064740	T	T	60064740	3	4	2	1	0	0	0	0	1	0	0	0	9956	565	20	4	282	4	MS4A4A	11	60064740	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	874694	60064740	74941776	423	895											
SLC15A3	51296	broad.mit.edu	37	chr11	60714394	60714394	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacttcttgggtcagtggGtggtgggcgttccgacactt	15	9	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60714394	A	A	60714394	1	1	2	0	1	0	0	0	0	0	0	0	14513	1276	44	4		4	SLC15A3	11	60714394	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	649654	60714394	74292122	424	896											
ASRGL1	80150	broad.mit.edu	37	chr11	62139609	62139609	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaagctgtggagctggggtCgaaatgagaaggcgcagctg	18	6	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62139609	A	A	62139609	1	1	2	0	1	0	0	0	0	0	0	0	1064	899	31	3		3	ASRGL1	11	62139609	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1425215	62139609	72866907	425	897											
TUT1	64852	broad.mit.edu	37	chr11	62346199	62346199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccccctctgctttctcctCctttggggtctctgctagtt	8	15	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62346199	T	T	62346199	3	4	2	1	0	0	0	0	1	0	0	0	16906	864	30	4	1650	4	TUT1	11	62346199	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	206590	62346199	72660317	426	898											
SLC3A2	6520	broad.mit.edu	37	chr11	62656234	62656234	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttggcttctgatttttctCttttttaaaaacaaacaaac	3	8	2	1	rs1051290		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62656234	G	G	62656234	1	3	2	0	1	0	0	0	0	0	0	0	14741	928	32	4		4	SLC3A2	11	62656234	3'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	310035	62656234	72350282	427	899											
PLCB3	5331	broad.mit.edu	37	chr11	64026281	64026281	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacctccaaccctgcgaacGgccactgacatgtcccgtag	10	16	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64026281	C	C	64026281	1	2	2	0	1	0	0	0	0	0	0	0	12124	1131	39	4		4	PLCB3	11	64026281	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1370047	64026281	70980235	428	900											
SLC22A11	55867	broad.mit.edu	37	chr11	64331815	64331815	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcccggtggctgattattaAgggcaaaccagaccaagcac	11	12	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64331815	T	T	64331815	3	4	2	1	0	0	0	0	1	0	0	0	14555	72	3	5	875	5	SLC22A11	11	64331815	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	305534	64331815	70674701	429	901											
EHBP1L1	254102	broad.mit.edu	37	chr11	65349621	65349621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcactctgggcaacttgGtgacctcgagggggccaggg	18	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65349621	A	A	65349621	3	1	2	1	0	0	0	0	1	0	0	0	5016	1261	44	4	1512	4	EHBP1L1	11	65349621	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1017806	65349621	69656895	430	902											
MYEOV	26579	broad.mit.edu	37	chr11	69063518	69063518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgtgggcgcgaatggatGtggctctgcgctcacctggg	16	9	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69063518	T	T	69063518	3	4	2	1	0	0	0	0	1	0	0	0	10119	1377	48	3	607	3	MYEOV	11	69063518	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3713897	69063518	65942998	431	903											
PRKRIR	5612	broad.mit.edu	37	chr11	76063505	76063505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgctgtgtttttgaaCaaaacaacgtgttaactgct	8	9	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76063505	A	A	76063505	3	1	2	1	0	0	0	0	1	0	0	0	12632	478	17	3	1600	3	PRKRIR	11	76063505	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6999987	76063505	58943011	432	904											
CCDC83	220047	broad.mit.edu	37	chr11	85606473	85606473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacaaaacaaacattttccCcctattttttctttgggtat	4	9	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85606473	T	T	85606473	1	4	2	0	1	0	0	0	0	0	0	0	2885	638	22	4		4	CCDC83	11	85606473	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	9542968	85606473	49400043	433	905											
GRM5	2915	broad.mit.edu	37	chr11	88323946	88323946	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcatagataaaaatccAacaattctatattccaatgt	3	7	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88323946	G	G	88323946	1	3	2	0	1	0	0	0	0	0	0	0	6866	145	5	5		5	GRM5	11	88323946	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	2717473	88323946	46682570	434	906											
FAT3	120114	broad.mit.edu	37	chr11	92087733	92087733	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatggagactgctgaccAtcaatgtggaggatgctaat	12	8	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92087733	G	G	92087733	3	3	2	1	0	0	0	0	1	0	0	0	5748	217	8	5	2457	5	FAT3	11	92087733	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	3763787	92087733	42918783	435	907											
FAT3	120114	broad.mit.edu	37	chr11	92498063	92498064	+	Missense_Mutation	DNP	GG	TT	TT													agataaaggcagtggacaatGggcgcccacagaaatcctcc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	92498064	TT	TT	92498063	3	4	2	1	0	0	0	0	1	0	0	0	5748	1348	47	2	4021	2	FAT3	11	92498063	Missense_Mutation	DNP	GG	TCGA-05-4249-01A-01D-1105-08	410330	92498063	42508453	436	908											
USP28	57646	broad.mit.edu	37	chr11	113688669	113688669	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggaaaggcttattcctAgaggctatacaatatttaat	7	6	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113688669	G	G	113688669	1	3	2	0	1	0	0	0	0	0	0	0	17185	435	15	5		5	USP28	11	113688669	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	21190606	113688669	21317847	437	909											
BUD13	84811	broad.mit.edu	37	chr11	116628765	116628765	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttggacaatctcctctttCtagtaccctagggcaaatac	7	11	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116628765	G	G	116628765	1	3	2	0	1	0	0	0	0	0	0	0	1583	928	32	4		4	BUD13	11	116628765	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	2940096	116628765	18377751	438	910											
DSCAML1	57453	broad.mit.edu	37	chr11	117395563	117395563	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctctgccgaaccgaaggtGttggtgacctcacaaatgta	11	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117395563	A	A	117395563	2	1	2	1	0	0	0	0	0	0	0	1	4809	1368	48	4		4	DSCAML1	11	117395563	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	766798	117395563	17610953	439	911											
TECTA	7007	broad.mit.edu	37	chr11	120996458	120996458	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttttgtgcacagctgcGtgtatgacctgtgcagtgtg	13	9	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120996458	A	A	120996458	3	1	2	1	0	0	0	0	1	0	0	0	15869	1145	40	4	1677	4	TECTA	11	120996458	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3600895	120996458	14010058	440	912											
SORL1	6653	broad.mit.edu	37	chr11	121403215	121403215	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacatggggagaccacggcGgaatcatcacggctattgcc	12	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121403215	A	A	121403215	3	1	2	1	0	0	0	0	1	0	0	0	15048	1117	39	4	1685	4	SORL1	11	121403215	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	406757	121403215	13603301	441	913											
A2ML1	144568	broad.mit.edu	37	chr12	9021845	9021845	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagctggattgcttacggatCttcatgacttcccttctaat	8	10	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9021845	A	A	9021845	1	1	2	0	1	0	0	0	0	0	0	0	5	928	32	3		3	A2ML1	12	9021845	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08		9021845	124830050	442	914											
A2M	2	broad.mit.edu	37	chr12	9248129	9248129	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccatctgcaacataaggaGtttacctctaggaagctgta	9	9	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9248129	A	A	9248129	1	1	2	0	1	0	0	0	0	0	0	0	4	1044	36	4		4	A2M	12	9248129	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	226284	9248129	124603766	443	915											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	2	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	16150156	25398285	108453610	444	916											
IPO8	10526	broad.mit.edu	37	chr12	30783692	30783692	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatggtaactggcacagcagGagggccctaaaagcagcccc	13	12	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30783692	T	T	30783692	1	4	2	0	1	0	0	0	0	0	0	0	7868	1189	41	3		3	IPO8	12	30783692	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	5385407	30783692	103068203	445	917											
DDX11	1663	broad.mit.edu	37	chr12	31249591	31249592	+	Missense_Mutation	DNP	GT	TA	TA													ctctttggattcactgaacgGtacggagcagtgttctcatc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	31249592	TA	TA	31249591	3	4	2	1	0	0	0	0	1	0	0	0	4376	1248	44	3	1600	3	DDX11	12	31249591	Missense_Mutation	DNP	GT	TCGA-05-4249-01A-01D-1105-08	465899	31249591	102602304	446	918											
PKP2	5318	broad.mit.edu	37	chr12	33021747	33021747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatataggcgtgaaccaccaCgcacggtcccaatttttaaa	7	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33021747	A	A	33021747	1	1	2	0	1	0	0	0	0	0	0	0	12080	551	19	3		3	PKP2	12	33021747	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1772156	33021747	100830148	447	919											
ARID2	196528	broad.mit.edu	37	chr12	46245320	46245320	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaatgccaccctcaggGggagtacaaactgtgcccat	11	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46245320	T	T	46245320	2	4	2	1	0	0	0	0	0	0	0	1	917	1219	43	2		2	ARID2	12	46245320	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	13223573	46245320	87606575	448	920											
SLC38A1	81539	broad.mit.edu	37	chr12	46592316	46592316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caataacccaggaaagttacCtggggcaggctttctctgca	10	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46592316	A	A	46592316	1	1	2	0	1	0	0	0	0	0	0	0	14715	696	24	2		2	SLC38A1	12	46592316	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	346996	46592316	87259579	449	921											
MLL2	8085	broad.mit.edu	37	chr12	49422684	49422684	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttttcccaagttgtgacaGgcagctttccagggacctcc	9	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49422684	A	A	49422684	3	1	2	1	0	0	0	0	1	0	0	0	9714	1000	35	4	2344	4	MLL2	12	49422684	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2830368	49422684	84429211	450	922											
SMARCD1	6602	broad.mit.edu	37	chr12	50480787	50480787	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaattgcatctctcccttcCgcctacaaactgagaattac	4	13	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50480787	T	T	50480787	1	4	2	0	1	0	0	0	0	0	0	0	14891	667	23	4		4	SMARCD1	12	50480787	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1058103	50480787	83371108	451	923											
DIP2B	57609	broad.mit.edu	37	chr12	51065097	51065097	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagggatcgtccacttctTcatccgcatcttctacgctg	7	14	5	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51065097	G	G	51065097	3	3	2	1	0	0	0	0	1	0	0	0	4568	1783	62	5	574	5	DIP2B	12	51065097	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	584310	51065097	82786798	452	924											
KRT76	51350	broad.mit.edu	37	chr12	53166440	53166440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttaacatttcccaggtGgggtggagctgagtcctgag	14	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53166440	T	T	53166440	1	4	2	0	1	0	0	0	0	0	0	0	8560	1363	47	2		2	KRT76	12	53166440	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	2101343	53166440	80685455	453	925											
MARCH9	92979	broad.mit.edu	37	chr12	58149711	58149711	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcggagggtggaggcgcGcacctggggtgtcagcggag	23	9	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58149711	C	C	58149711	1	2	2	0	1	0	0	0	0	0	0	0	9400	1102	38	4		4	MARCH9	12	58149711	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	4983271	58149711	75702184	454	926											
FAM19A2	338811	broad.mit.edu	37	chr12	62628503	62628503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttgcctctgaggagccCcgtctaccagtcctttcctg	10	16	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62628503	A	A	62628503	1	1	2	0	1	0	0	0	0	0	0	0	5579	638	22	2		2	FAM19A2	12	62628503	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	4478792	62628503	71223392	455	927											
USP15	9958	broad.mit.edu	37	chr12	62783190	62783190	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaataataaattcattAcaattttttttgttttttag	2	4	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62783190	G	G	62783190	1	3	2	0	1	0	0	0	0	0	0	0	17172	406	14	5		5	USP15	12	62783190	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	154687	62783190	71068705	456	928											
CCT2	10576	broad.mit.edu	37	chr12	69983267	69983267	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggttggttttatttagttCcgatgaagttaaattccgtc	9	5	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69983267	T	T	69983267	3	4	2	1	0	0	0	0	1	0	0	0	2983	855	30	4	475	4	CCT2	12	69983267	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	7200077	69983267	63868628	457	929											
LGR5	8549	broad.mit.edu	37	chr12	71978333	71978333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaagatcaaaacacccaaGcttgatgtcaattaactctg	6	10	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71978333	T	T	71978333	3	4	2	1	0	0	0	0	1	0	0	0	8829	971	34	3	2613	3	LGR5	12	71978333	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1995066	71978333	61873562	458	930											
KCNC2	3747	broad.mit.edu	37	chr12	75442064	75442064	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgggggtgatagtggcGgctcacttcctgtactgtcg	14	9	2	1	rs142936560	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75442064	A	A	75442064	3	1	2	1	0	0	0	0	1	0	0	0	8085	1116	39	4	341	4	KCNC2	12	75442064	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3463731	75442064	58409831	459	931											
E2F7	144455	broad.mit.edu	37	chr12	77423507	77423507	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcaagtgacatgaaacagctCcatattccagactccattgc	7	12	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77423507	G	G	77423507	1	3	2	0	1	0	0	0	0	0	0	0	4912	870	30	4		4	E2F7	12	77423507	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1981443	77423507	56428388	460	932											
NAV3	89795	broad.mit.edu	37	chr12	78512105	78512105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgtttgccagctgttatGcaaaagtgctttactttatt	8	7	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78512105	T	T	78512105	1	4	2	0	1	0	0	0	0	0	0	0	10279	1334	46	3		3	NAV3	12	78512105	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1088598	78512105	55339790	461	933											
MYF6	4618	broad.mit.edu	37	chr12	81101854	81101854	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcgaggcactgaagcggcGaactgtggccaaccccaacc	11	15	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81101854	A	A	81101854	3	1	2	1	0	0	0	0	1	0	0	0	10122	1058	37	4	358	4	MYF6	12	81101854	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2589749	81101854	52750041	462	934											
C12orf50	160419	broad.mit.edu	37	chr12	88374099	88374099	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatttttctctctctcaaCctccaggtttacttgctccc	3	16	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88374099	A	A	88374099	1	1	2	0	1	0	0	0	0	0	0	0	1708	522	18	3		3	C12orf50	12	88374099	3'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	7272245	88374099	45477796	463	935											
PLXNC1	10154	broad.mit.edu	37	chr12	94603508	94603508	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaagattttaatttgtcctCgttgtattgtctcattttgc	7	6	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94603508	A	A	94603508	1	1	2	0	1	0	0	0	0	0	0	0	12221	899	31	3		3	PLXNC1	12	94603508	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	6229409	94603508	39248387	464	936											
HAL	3034	broad.mit.edu	37	chr12	96374622	96374622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctccagaaactgtctctCccctattggcaaagaccatc	5	15	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96374622	A	A	96374622	3	1	2	1	0	0	0	0	1	0	0	0	7013	855	30	3	690	3	HAL	12	96374622	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1771114	96374622	37477273	465	937											
DEPDC4	120863	broad.mit.edu	37	chr12	100646344	100646344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttacaaagaaaacaaagCataagatgaaaaatggagag	10	3	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100646344	A	A	100646344	1	1	2	0	1	0	0	0	0	0	0	0	4481	725	25	3		3	DEPDC4	12	100646344	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	4271722	100646344	33205551	466	938											
SLC17A8	246213	broad.mit.edu	37	chr12	100796557	100796557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctccaaatatttttgaacTttaaatctcttgattctaca	3	8	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100796557	A	A	100796557	1	1	2	0	1	0	0	0	0	0	0	0	14536	1624	56	5		5	SLC17A8	12	100796557	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	150213	100796557	33055338	467	939											
GAS2L3	283431	broad.mit.edu	37	chr12	101005791	101005791	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttccagaattttccaatgaGaaaagtgccctgtaagaaag	8	7	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101005791	C	C	101005791	3	2	2	1	0	0	0	0	1	0	0	0	6310	942	33	4	331	4	GAS2L3	12	101005791	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	209234	101005791	32846104	468	940											
STAB2	55576	broad.mit.edu	37	chr12	104096858	104096858	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aattgtcctattgctaacctCcacttcctatcttttccata	2	13	1	0	rs144421915	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104096858	G	G	104096858	1	3	2	0	1	0	0	0	0	0	0	0	15356	870	30	4		4	STAB2	12	104096858	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3091067	104096858	29755037	469	941											
TXNRD1	7296	broad.mit.edu	37	chr12	104681198	104681198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacagtttgcagaacagCggagaaaatgggtattgtat	13	4	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104681198	A	A	104681198	1	1	2	0	1	0	0	0	0	0	0	0	16933	783	27	3		3	TXNRD1	12	104681198	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	584340	104681198	29170697	470	942											
TXNRD1	7296	broad.mit.edu	37	chr12	104681321	104681324	+	Intron	DEL	TCTC	-	-													tataactatgtaagaatgctTctctaggaattttcacacca							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104681324	-	-	104681321	6	5	2	0	1	1	0	1	0	0	0	0	16933	1798	62	0		0	TXNRD1	12	104681321	Intron	DEL	TCTC	TCGA-05-4249-01A-01D-1105-08	123	104681321	29170574	471	943											
MYO1H	283446	broad.mit.edu	37	chr12	109841826	109841826	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catccattagtgacaagaatGactggaaaactgtttccaac	7	9	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109841826	T	T	109841826	3	4	2	1	0	0	0	0	1	0	0	0	10169	1290	45	3	764	3	MYO1H	12	109841826	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	5160505	109841826	24010069	472	944											
UBE3B	89910	broad.mit.edu	37	chr12	109926480	109926480	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcggggaaaaggtctgtGggacttgcttcaaaatgttc	12	7	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109926480	A	A	109926480	1	1	2	0	1	0	0	0	0	0	0	0	17006	1363	47	4		4	UBE3B	12	109926480	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	84654	109926480	23925415	473	945											
MYL2	4633	broad.mit.edu	37	chr12	111356969	111356969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgttggagttggcgcccCcggctctcttctttgctttc	10	14	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111356969	A	A	111356969	3	1	2	1	0	0	0	0	1	0	0	0	10141	623	22	2	492	2	MYL2	12	111356969	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1430489	111356969	22494926	474	946											
RPH3A	22895	broad.mit.edu	37	chr12	113303262	113303262	+	Frame_Shift_Del	DEL	G	-	-													acatgaggaagaacgtggctGgagatggggtgaaccgctgc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113303262	-	-	113303262	7	5	2	1	0	1	0	1	0	0	0	0	13662	1349	47	0	288	0	RPH3A	12	113303262	Frame_Shift_Del	DEL	G	TCGA-05-4249-01A-01D-1105-08	1946293	113303262	20548633	475	947											
MED13L	23389	broad.mit.edu	37	chr12	116401214	116401214	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctaggttggtatctacctTaaaacatccgacgtggtttt	9	9	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116401214	A	A	116401214	3	1	2	1	0	0	0	0	1	0	0	0	9524	1751	61	5	142	5	MED13L	12	116401214	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	3097952	116401214	17450681	476	948											
NOS1	4842	broad.mit.edu	37	chr12	117696828	117696828	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaacaggtaaaagctcatctCacctccccattctcaggggg	9	13	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117696828	T	T	117696828	1	4	2	0	1	0	0	0	0	0	0	0	10636	841	29	4		4	NOS1	12	117696828	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1295614	117696828	16155067	477	949											
ORAI1	84876	broad.mit.edu	37	chr12	122079563	122079563	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctaggcccatgtggtctGggcccttccagtgctttggc	13	13	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122079563	T	T	122079563	1	4	2	0	1	0	0	0	0	0	0	0	11351	1363	47	2		2	ORAI1	12	122079563	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	4382735	122079563	11772332	478	950											
TMEM132B	114795	broad.mit.edu	37	chr12	125833842	125833842	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagatcctgaagaccataCtttatataattacagggctt	8	7	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125833842	T	T	125833842	1	4	2	0	1	0	0	0	0	0	0	0	16169	580	20	4		4	TMEM132B	12	125833842	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3754279	125833842	8018053	479	951											
GOLGA3	2802	broad.mit.edu	37	chr12	133368076	133368076	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcagagatgtttcactgAgggctccagaaggggccaca	13	10	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133368076	T	T	133368076	1	4	2	0	1	0	0	0	0	0	0	0	6618	319	11	5		5	GOLGA3	12	133368076	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	7534234	133368076	483819	480	952											
ATP8A2	51761	broad.mit.edu	37	chr13	26148945	26148945	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcctatttttcttcctttaGatgggacaggaacaaacatt	7	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26148945	C	C	26148945	5	2	2	1	0	0	0	0	0	0	1	0	1197	956	33	4	1736	4	ATP8A2	13	26148945	Splice_Site	SNP	G	TCGA-05-4249-01A-01D-1105-08		26148945	89020933	481	953											
RXFP2	122042	broad.mit.edu	37	chr13	32332699	32332699	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgactccccaatgtatttgTgataacgacctgaatttttg	7	8	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32332699	A	A	32332699	1	1	2	0	1	0	0	0	0	0	0	0	13871	1711	59	5		5	RXFP2	13	32332699	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	6183754	32332699	82837179	482	954											
POSTN	10631	broad.mit.edu	37	chr13	38162191	38162191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaagtcttacgatcaccCtatttctactctcttgctat	4	11	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38162191	A	A	38162191	1	1	2	0	1	0	0	0	0	0	0	0	12354	696	24	2		2	POSTN	13	38162191	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5829492	38162191	77007687	483	955											
POSTN	10631	broad.mit.edu	37	chr13	38172804	38172804	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcataatgattgttggcGtttatagggttaacaataag	10	3	1	1	rs138966400	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38172804	A	A	38172804	2	1	2	1	0	0	0	0	0	0	0	1	12354	1136	40	4		4	POSTN	13	38172804	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	10613	38172804	76997074	484	956											
MRPS31	10240	broad.mit.edu	37	chr13	41328102	41328102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagaacactaaggacatcCtggaacgatggaatgtttct	9	7	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41328102	A	A	41328102	1	1	2	0	1	0	0	0	0	0	0	0	9935	696	24	2		2	MRPS31	13	41328102	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3155298	41328102	73841776	485	957											
TNFSF11	8600	broad.mit.edu	37	chr13	43181007	43181007	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctccttactggatccggatCaggatgcaacatactttggg	10	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43181007	T	T	43181007	4	4	2	1	0	0	0	0	0	1	0	0	16425	827	29	4	925	4	TNFSF11	13	43181007	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1852905	43181007	71988871	486	958											
DIAPH3	81624	broad.mit.edu	37	chr13	60582753	60582753	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttttttttcttcaccagcTgaagttaaagcttctaaaac	4	8	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60582753	A	A	60582753	2	1	2	1	0	0	0	0	0	0	0	1	4560	1567	55	5		5	DIAPH3	13	60582753	Silent	SNP	T	TCGA-05-4249-01A-01D-1105-08	17401746	60582753	54587125	487	959											
KLHL1	57626	broad.mit.edu	37	chr13	70413137	70413137	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatccattcctcctacagcaTacaaagttccgactgtagat	5	12	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70413137	C	C	70413137	3	2	2	1	0	0	0	0	1	0	0	0	8436	1406	49	5	885	5	KLHL1	13	70413137	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	9830384	70413137	44756741	488	960											
DACH1	1602	broad.mit.edu	37	chr13	72063035	72063035	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accatgtttcagtcagtctaAtgggattaagtaggaacagt	10	6	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72063035	T	T	72063035	1	4	2	0	1	0	0	0	0	0	0	0	4253	116	4	5		5	DACH1	13	72063035	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	1649898	72063035	43106843	489	961											
SCEL	8796	broad.mit.edu	37	chr13	78146329	78146329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaaccaggagacggtaaGggaaaggtgtcaggcgtaat	16	6	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78146329	T	T	78146329	1	4	2	0	1	0	0	0	0	0	0	0	14000	1015	35	2		2	SCEL	13	78146329	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	6083294	78146329	37023549	490	962											
SLITRK1	114798	broad.mit.edu	37	chr13	84454289	84454289	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgttgtactccacgttcaGgtactctaggttttgcagcc	10	11	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84454289	A	A	84454289	2	1	2	1	0	0	0	0	0	0	0	1	14856	991	35	4		4	SLITRK1	13	84454289	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	6307960	84454289	30715589	491	963											
SLITRK5	26050	broad.mit.edu	37	chr13	88330366	88330366	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcacccgggggcaggggAcagcaggctacgggaaccgg	18	11	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88330366	G	G	88330366	3	3	2	1	0	0	0	0	1	0	0	0	14860	275	10	5	2725	5	SLITRK5	13	88330366	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	3876077	88330366	26839512	492	964											
GPC6	10082	broad.mit.edu	37	chr13	94482405	94482405	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctttctgttttatctgcAgaatttttccgagagctcct	6	10	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94482405	T	T	94482405	5	4	2	1	0	0	0	0	0	0	1	0	6667	202	7	5	328	5	GPC6	13	94482405	Splice_Site	SNP	A	TCGA-05-4249-01A-01D-1105-08	6152039	94482405	20687473	493	965											
GPR180	160897	broad.mit.edu	37	chr13	95271297	95271297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaatgctatgactccaGttaaaaaacaagttctagaa	8	6	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95271297	T	T	95271297	1	4	2	0	1	0	0	0	0	0	0	0	6741	1044	36	3		3	GPR180	13	95271297	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	788892	95271297	19898581	494	966											
NALCN	259232	broad.mit.edu	37	chr13	101755543	101755543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaaatttccttgaagcCgctgaaaagttctcgaacaa	6	9	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101755543	A	A	101755543	3	1	2	1	0	0	0	0	1	0	0	0	10242	652	23	1	2255	1	NALCN	13	101755543	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6484246	101755543	13414335	495	967											
CARS2	79587	broad.mit.edu	37	chr13	111329502	111329502	+	Intron	DEL	C	-	-													gaagctcagtcaccccaccaCggatgctcagacattcaccc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111329502	-	-	111329502	6	5	2	0	1	1	0	1	0	0	0	0	2684	551	19	0		0	CARS2	13	111329502	Intron	DEL	C	TCGA-05-4249-01A-01D-1105-08	9573959	111329502	3840376	496	968											
RNASE11	122651	broad.mit.edu	37	chr14	21052268	21052268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcatcacttctgtggagctGcggatgaagttattgctcca	11	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21052268	T	T	21052268	2	4	2	1	0	0	0	0	0	0	0	1	13512	1306	46	3		3	RNASE11	14	21052268	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08		21052268	86297272	497	969											
FLJ10357	55701	broad.mit.edu	37	chr14	21553834	21553834	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtcttcacccgctgccctCtgctcttcctcagactgctg	7	18	5	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21553834	G	G	21553834	1	3	2	0	1	0	0	0	0	0	0	0	5983	928	32	4		4	FLJ10357	14	21553834	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	501566	21553834	85795706	498	970											
ZNF219	51222	broad.mit.edu	37	chr14	21558621	21558621	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctgccccctgctggcttcTctacccaactacctctagcg	7	19	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21558621	C	C	21558621	1	2	2	0	1	0	0	0	0	0	0	0	17899	1566	54	5		5	ZNF219	14	21558621	3'UTR	SNP	T	TCGA-05-4249-01A-01D-1105-08	4787	21558621	85790919	499	971											
PABPN1	8106	broad.mit.edu	37	chr14	23792382	23792382	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagatgtggttttgggtgtgGagggagtgtgggaaggaggt	22	0	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23792382	A	A	23792382	1	1	2	0	1	0	0	0	0	0	0	0	11462	1189	41	4		4	PABPN1	14	23792382	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	2233761	23792382	83557158	500	972											
CMTM5	116173	broad.mit.edu	37	chr14	23847613	23847613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatctctgcctacatggCcgcggcgctactggagttct	10	15	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847613	A	A	23847613	3	1	2	1	0	0	0	0	1	0	0	0	3618	739	26	3	188	3	CMTM5	14	23847613	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	55231	23847613	83501927	501	973											
FAM158A	51016	broad.mit.edu	37	chr14	24610337	24610337	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggttgagggcgacctccaaCatgacggacagggccaggtg	16	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24610337	G	G	24610337	3	3	2	1	0	0	0	0	1	0	0	0	5513	478	17	4	469	4	FAM158A	14	24610337	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	762724	24610337	82739203	502	974											
TSSK4	283629	broad.mit.edu	37	chr14	24676508	24676508	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctcagccagacttactgTggcagctttgcttacgcttg	9	13	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24676508	A	A	24676508	4	1	2	1	0	0	0	0	0	1	0	0	16796	1702	59	5	637	5	TSSK4	14	24676508	Nonsense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	66171	24676508	82673032	503	975											
CBLN3	643866	broad.mit.edu	37	chr14	24897315	24897315	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccgggagggctgaggggcGgccagcattggactctgcac	17	12	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24897315	A	A	24897315	1	1	2	0	1	0	0	0	0	0	0	0	2732	1131	39	4		4	CBLN3	14	24897315	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	220807	24897315	82452225	504	976											
STRN3	29966	broad.mit.edu	37	chr14	31374709	31374709	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaccagtgttgaaagaggtTaccatatgagctggatcaca	10	8	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31374709	A	A	31374709	2	1	2	1	0	0	0	0	0	0	0	1	15448	1741	61	5		5	STRN3	14	31374709	Silent	SNP	T	TCGA-05-4249-01A-01D-1105-08	6477394	31374709	75974831	505	977											
AKAP6	9472	broad.mit.edu	37	chr14	33294034	33294034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaaaggtacgtatagtcCtcatgccgtatatgtattta	8	7	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33294034	A	A	33294034	1	1	2	0	1	0	0	0	0	0	0	0	455	696	24	2		2	AKAP6	14	33294034	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1919325	33294034	74055506	506	978											
C14orf28	122525	broad.mit.edu	37	chr14	45374763	45374763	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagaaataaatatagattGatgctaaaagttgttttccc	7	5	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45374763	C	C	45374763	1	2	2	0	1	0	0	0	0	0	0	0	1783	1305	45	4		4	C14orf28	14	45374763	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	12080729	45374763	61974777	507	979											
MDGA2	161357	broad.mit.edu	37	chr14	47504503	47504503	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggaacagtcagattgggTggaacttgaaatgggaaaaa	14	3	1	2	rs146423621	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47504503	A	A	47504503	2	1	2	1	0	0	0	0	0	0	0	1	9500	1683	59	5		5	MDGA2	14	47504503	Silent	SNP	T	TCGA-05-4249-01A-01D-1105-08	2129740	47504503	59845037	508	980											
SAV1	60485	broad.mit.edu	37	chr14	51131974	51131974	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataatatctgtagtcttcaTgtgcacgatctccaagtggc	8	10	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51131974	C	C	51131974	3	2	2	1	0	0	0	0	1	0	0	0	13968	1464	51	5	709	5	SAV1	14	51131974	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	3627471	51131974	56217566	509	981											
TBPL2	387332	broad.mit.edu	37	chr14	55895776	55895776	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattggattgttaccatttGtaccacgtttatctttcaat	6	7	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55895776	T	T	55895776	1	4	2	0	1	0	0	0	0	0	0	0	15768	1392	48	3		3	TBPL2	14	55895776	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	4763802	55895776	51453764	510	982											
MTHFD1	4522	broad.mit.edu	37	chr14	64897086	64897086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgcaatggcgcaatctcGgctcactgcaacctctgcct	10	14	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64897086	T	T	64897086	1	4	2	0	1	0	0	0	0	0	0	0	10021	1131	39	1		1	MTHFD1	14	64897086	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	9001310	64897086	42452454	511	983											
SPTB	6710	broad.mit.edu	37	chr14	65216089	65216089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgccgaggctggcgtcggGgccggagagggaaggcaggg	22	9	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65216089	T	T	65216089	3	4	2	1	0	0	0	0	1	0	0	0	15236	1232	43	2	68	2	SPTB	14	65216089	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	319003	65216089	42133451	512	984											
ZFP36L1	677	broad.mit.edu	37	chr14	69256990	69256990	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcagccgctcgcccccttCcgagaaggagcggtctcgga	13	16	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69256990	A	A	69256990	4	1	2	1	0	0	0	0	0	1	0	0	17772	864	30	3	743	3	ZFP36L1	14	69256990	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	4040901	69256990	38092550	513	985											
PCNX	22990	broad.mit.edu	37	chr14	71514586	71514586	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgatcctcttttagcagccCtacatatcagtatgttacag	6	11	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71514586	G	G	71514586	3	3	2	1	0	0	0	0	1	0	0	0	11685	681	24	4	4309	4	PCNX	14	71514586	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2257596	71514586	35834954	514	986											
ACOT2	10965	broad.mit.edu	37	chr14	74042272	74042272	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctcctggaaacatctgcCacatttagtgtgtgtatgtg	9	9	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74042272	T	T	74042272	1	4	2	0	1	0	0	0	0	0	0	0	152	609	21	4		4	ACOT2	14	74042272	3'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	2527686	74042272	33307268	515	987											
NEK9	91754	broad.mit.edu	37	chr14	75573382	75573382	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccataataatctgatcCgaaggcatagagctgaccct	9	11	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75573382	A	A	75573382	4	1	2	1	0	0	0	0	0	1	0	0	10426	661	23	1	1632	1	NEK9	14	75573382	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1531110	75573382	31776158	516	988											
CCDC88C	440193	broad.mit.edu	37	chr14	91779574	91779574	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctccttctcaacggcggaCagtttggcagtgctatcgtc	10	13	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91779574	G	G	91779574	2	3	2	1	0	0	0	0	0	0	0	1	2893	465	17	4		4	CCDC88C	14	91779574	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	16206192	91779574	15569966	517	989											
KIAA1409	57578	broad.mit.edu	37	chr14	94048432	94048432	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgccttggcctctggcctCagcagcatgggacccgagac	14	14	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94048432	T	T	94048432	1	4	2	0	1	0	0	0	0	0	0	0	8300	841	29	4		4	KIAA1409	14	94048432	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	2268858	94048432	13301108	518	990											
KIAA1409	57578	broad.mit.edu	37	chr14	94088409	94088409	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttagatctgatagatctAtcctcagattcaacctcggg	8	9	4	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94088409	G	G	94088409	2	3	2	1	0	0	0	0	0	0	0	1	8300	436	16	5		5	KIAA1409	14	94088409	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	39977	94088409	13261131	519	991											
SERPINA4	5267	broad.mit.edu	37	chr14	95029670	95029670	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtggtgggtgttacattgCctttcacaagcccatctgca	11	10	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95029670	T	T	95029670	1	4	2	0	1	0	0	0	0	0	0	0	14204	754	26	4		4	SERPINA4	14	95029670	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	941261	95029670	12319870	520	992											
SERPINA5	5104	broad.mit.edu	37	chr14	95056656	95056656	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttcaaaaagaggtactttCagactaccccagggccagcc	9	12	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95056656	T	T	95056656	1	4	2	0	1	0	0	0	0	0	0	0	14205	841	29	4		4	SERPINA5	14	95056656	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	26986	95056656	12292884	521	993											
AK7	122481	broad.mit.edu	37	chr14	96871085	96871085	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaaatggctgtcaattttCtttttcaggccatctctcga	7	10	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96871085	T	T	96871085	1	4	2	0	1	0	0	0	0	0	0	0	444	928	32	4		4	AK7	14	96871085	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1814429	96871085	10478455	522	994											
MKRN3	7681	broad.mit.edu	37	chr15	23811308	23811308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttctggtcggaagatgGccactgagggtggcgtttcg	15	9	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23811308	T	T	23811308	3	4	2	1	0	0	0	0	1	0	0	0	9701	1203	42	3	381	3	MKRN3	15	23811308	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08		23811308	78720084	523	995											
HERC2	8924	broad.mit.edu	37	chr15	28413406	28413406	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcactttaaaagctccttTacagagaatattcttctaag	5	8	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28413406	C	C	28413406	1	2	2	0	1	0	0	0	0	0	0	0	7125	1769	61	5		5	HERC2	15	28413406	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	4602098	28413406	74117986	524	996											
HERC2	8924	broad.mit.edu	37	chr15	28414753	28414754	+	Missense_Mutation	DNP	CC	AA	AA													ttggcttagaattacttgcaCcacttattttattactggca							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	28414754	AA	AA	28414753	3	1	2	1	0	0	0	0	1	0	0	0	7125	507	18	3	4510	3	HERC2	15	28414753	Missense_Mutation	DNP	CC	TCGA-05-4249-01A-01D-1105-08	1347	28414753	74116639	525	997											
TJP1	7082	broad.mit.edu	37	chr15	30010701	30010701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagcaccatggagaggCtcaaaatgacctgctctaga	11	11	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30010701	A	A	30010701	3	1	2	1	0	0	0	0	1	0	0	0	16052	796	28	3	1633	3	TJP1	15	30010701	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1595948	30010701	72520691	526	998											
ARHGAP11B	89839	broad.mit.edu	37	chr15	30938486	30938486	+	RNA	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggtggccaccaggcttctCctttccccgctggtaggcct	12	15	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30938486	G	G	30938486	1	3	2	0	1	0	0	0	0	0	0	0	866	870	30	4		4	ARHGAP11B	15	30938486	RNA	SNP	C	TCGA-05-4249-01A-01D-1105-08	927785	30938486	71592906	527	999											
TGM5	9333	broad.mit.edu	37	chr15	43552187	43552187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtctagaaacccttgagCctgtctctctggcagcactg	12	12	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43552187	A	A	43552187	1	1	2	0	1	0	0	0	0	0	0	0	15956	754	26	3		3	TGM5	15	43552187	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	12613701	43552187	58979205	528	1000											
CEP152	22995	broad.mit.edu	37	chr15	49030868	49030868	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggaaggccagcccaagcAgtcactaaggtcccctccat	10	15	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49030868	G	G	49030868	3	3	2	1	0	0	0	0	1	0	0	0	3278	188	7	5	425	5	CEP152	15	49030868	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	5478681	49030868	53500524	529	1001											
COPS2	9318	broad.mit.edu	37	chr15	49431825	49431825	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtcaatagctgcttatatCtattcatcatttctggaaag	7	7	5	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49431825	G	G	49431825	3	3	2	1	0	0	0	0	1	0	0	0	3765	913	32	4	1120	4	COPS2	15	49431825	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	400957	49431825	53099567	530	1002											
MYO5C	55930	broad.mit.edu	37	chr15	52553358	52553358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagccccgtcaggtggcCcagccatccaaagacacaca	8	17	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52553358	A	A	52553358	1	1	2	0	1	0	0	0	0	0	0	0	10174	638	22	2		2	MYO5C	15	52553358	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3121533	52553358	49978034	531	1003											
SLTM	79811	broad.mit.edu	37	chr15	59191867	59191867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttctccgggctctgtgCaatggcgtcctgcccatctt	9	15	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59191867	A	A	59191867	3	1	2	1	0	0	0	0	1	0	0	0	14868	710	25	3	2305	3	SLTM	15	59191867	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6638509	59191867	43339525	532	1004											
SEMA7A	8482	broad.mit.edu	37	chr15	74707315	74707315	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatggagaccagctcaatGgggggcccagaacccaccca	12	14	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74707315	A	A	74707315	1	1	2	0	1	0	0	0	0	0	0	0	14156	1363	47	4		4	SEMA7A	15	74707315	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	15515448	74707315	27824077	533	1005											
SH3GL3	6457	broad.mit.edu	37	chr15	84245579	84245579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcggcatgttgaaaaactcTaaagcaggagtgtccaatct	9	8	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84245579	A	A	84245579	1	1	2	0	1	0	0	0	0	0	0	0	14365	1537	53	5		5	SH3GL3	15	84245579	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	9538264	84245579	18285813	534	1006											
ACAN	176	broad.mit.edu	37	chr15	89415156	89415156	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttcctcctccatcccctCtgcctccgtgagctcaagtt	5	19	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89415156	A	A	89415156	1	1	2	0	1	0	0	0	0	0	0	0	117	928	32	3		3	ACAN	15	89415156	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5169577	89415156	13116236	535	1007											
SYNM	23336	broad.mit.edu	37	chr15	99673193	99673193	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaccaaaggtcggtgatttCagatgaaaagaaagttgccc	11	7	1	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99673193	T	T	99673193	3	4	2	1	0	0	0	0	1	0	0	0	15574	838	29	4	4641	4	SYNM	15	99673193	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	10258037	99673193	2858199	536	1008											
ASB7	140460	broad.mit.edu	37	chr15	101170138	101170138	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacggatgttatataattaCggagcagacacgaacacacg	10	9	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101170138	T	T	101170138	2	4	2	1	0	0	0	0	0	0	0	1	1032	547	19	4		4	ASB7	15	101170138	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	1496945	101170138	1361254	537	1009											
OR4F15	390649	broad.mit.edu	37	chr15	102358761	102358761	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcctttgacagatacatGgccatatgtaaacctctcca	7	11	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102358761	A	A	102358761	3	1	2	1	0	0	0	0	1	0	0	0	11155	1348	47	4	374	4	OR4F15	15	102358761	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1188623	102358761	172631	538	1010											
RHBDL1	9028	broad.mit.edu	37	chr16	727062	727062	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagcccccttgtgtaccAccccgggcaccgtgcccgcg	12	18	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	727062	C	C	727062	3	2	2	1	0	0	0	0	1	0	0	0	13430	159	6	5	723	5	RHBDL1	16	727062	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08		727062	89627691	539	1011											
MSLNL	401827	broad.mit.edu	37	chr16	819649	819649	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctgtagatggaacagGgaggccaccatcagtcccac	12	13	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	819649	C	C	819649	1	2	2	0	1	0	0	0	0	0	0	0	9976	1247	43	4		4	MSLNL	16	819649	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	92587	819649	89535104	540	1012											
CACNA1H	8912	broad.mit.edu	37	chr16	1250434	1250434	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctacacgcagccgcaggccGagggggtgggcgctgcacgc	17	15	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1250434	A	A	1250434	3	1	2	1	0	0	0	0	1	0	0	0	2571	1059	37	4	1004	4	CACNA1H	16	1250434	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	430785	1250434	89104319	541	1013											
MGRN1	23295	broad.mit.edu	37	chr16	4730185	4730185	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggagatcgtttccgccccAggctagtgtctgattcatat	12	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4730185	C	C	4730185	1	2	2	0	1	0	0	0	0	0	0	0	9652	203	7	5		5	MGRN1	16	4730185	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	3479751	4730185	85624568	542	1014											
ALG1	56052	broad.mit.edu	37	chr16	5128065	5128065	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcctgctcgccactgccCtggcctctccccttctcact	5	22	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5128065	T	T	5128065	1	4	2	0	1	0	0	0	0	0	0	0	510	696	24	4		4	ALG1	16	5128065	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	397880	5128065	85226688	543	1015											
ABAT	18	broad.mit.edu	37	chr16	8870076	8870076	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgttcccctgccagccTctggtagatgcccactagat	11	13	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8870076	A	A	8870076	1	1	2	0	1	0	0	0	0	0	0	0	27	1566	54	5		5	ABAT	16	8870076	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	3742011	8870076	81484677	544	1016											
MYH11	4629	broad.mit.edu	37	chr16	15820896	15820896	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcgtctgcttattcttgtCtaggttcgccttggcctggc	11	12	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15820896	T	T	15820896	3	4	2	1	0	0	0	0	1	0	0	0	10125	913	32	4	2342	4	MYH11	16	15820896	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6950820	15820896	74533857	545	1017											
GPR139	124274	broad.mit.edu	37	chr16	20084939	20084939	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggcgtgcgtgtgctccatGagcgcgcccctcgctcccct	13	17	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20084939	T	T	20084939	1	4	2	0	1	0	0	0	0	0	0	0	6713	1305	45	3		3	GPR139	16	20084939	5'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	4264043	20084939	70269814	546	1018											
UMOD	7369	broad.mit.edu	37	chr16	20348852	20348852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcctggattcaaatattGctctgtcacctttcagctgt	6	11	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20348852	T	T	20348852	1	4	2	0	1	0	0	0	0	0	0	0	17105	1334	46	3		3	UMOD	16	20348852	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	263913	20348852	70005901	547	1019											
PDILT	204474	broad.mit.edu	37	chr16	20386369	20386369	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacggcagtggtggctgattCgtctcttcactttttcaagt	11	9	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20386369	T	T	20386369	1	4	2	0	1	0	0	0	0	0	0	0	11768	899	31	4		4	PDILT	16	20386369	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	37517	20386369	69968384	548	1020											
ACSM5	54988	broad.mit.edu	37	chr16	20448524	20448524	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagctgtctgcactttcctCcttcctttgaaatttcatgg	6	12	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20448524	A	A	20448524	1	1	2	0	1	0	0	0	0	0	0	0	187	870	30	3		3	ACSM5	16	20448524	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	62155	20448524	69906229	549	1021											
ACSM2B	348158	broad.mit.edu	37	chr16	20548858	20548858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaggacaataagaggatGgctagaattgggcataaagg	15	3	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20548858	T	T	20548858	1	4	2	0	1	0	0	0	0	0	0	0	184	1363	47	2		2	ACSM2B	16	20548858	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	100334	20548858	69805895	550	1022											
ITGAL	3683	broad.mit.edu	37	chr16	30509426	30509426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaatgggaggcacgggGggcttagtcaggagttcaag	16	7	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30509426	A	A	30509426	1	1	2	0	1	0	0	0	0	0	0	0	7956	1247	43	4		4	ITGAL	16	30509426	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	9960568	30509426	59845327	551	1023											
ZNF646	9726	broad.mit.edu	37	chr16	31092791	31092791	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccaaacttctccctaacCtgctgtctcttaagaaccac	4	16	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31092791	T	T	31092791	2	4	2	1	0	0	0	0	0	0	0	1	18189	680	24	4		4	ZNF646	16	31092791	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	583365	31092791	59261962	552	1024											
ZNF646	9726	broad.mit.edu	37	chr16	31092914	31092914	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgggcgggtccatgcacccCgggaggggcctttcacctgc	15	15	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31092914	T	T	31092914	3	4	2	1	0	0	0	0	1	0	0	0	18189	643	23	4	5271	4	ZNF646	16	31092914	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	123	31092914	59261839	553	1025											
PRSS36	146547	broad.mit.edu	37	chr16	31154786	31154786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctggccgcggggccttcCcgcactctgaggggtgagag	16	15	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31154786	A	A	31154786	3	1	2	1	0	0	0	0	1	0	0	0	12731	623	22	2	1622	2	PRSS36	16	31154786	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	61872	31154786	59199967	554	1026											
ITGAX	3687	broad.mit.edu	37	chr16	31392131	31392131	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagggcctggggaaggagGggagggagttaaaggttggg	23	3	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31392131	T	T	31392131	1	4	2	0	1	0	0	0	0	0	0	0	7959	1247	43	2		2	ITGAX	16	31392131	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	237345	31392131	58962622	555	1027											
ARMC5	79798	broad.mit.edu	37	chr16	31476156	31476156	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggggtggcgcctgacgaTtggccggcaccacgtgcccg	17	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31476156	C	C	31476156	2	2	2	1	0	0	0	0	0	0	0	1	958	1490	52	5		5	ARMC5	16	31476156	Silent	SNP	T	TCGA-05-4249-01A-01D-1105-08	84025	31476156	58878597	556	1028											
SLC6A2	6530	broad.mit.edu	37	chr16	55703417	55703417	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgcagctcttgcagacacgGatccaagactgggaggggca	14	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55703417	C	C	55703417	1	2	2	0	1	0	0	0	0	0	0	0	14797	1189	41	4		4	SLC6A2	16	55703417	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	24227261	55703417	34651336	557	1029											
CES7	221223	broad.mit.edu	37	chr16	55886647	55886647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgacgcaggtccccatggCatgtttccatccaggcacac	9	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55886647	A	A	55886647	1	1	2	0	1	0	0	0	0	0	0	0	3302	725	25	3		3	CES7	16	55886647	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	183230	55886647	34468106	558	1030											
CES8	283848	broad.mit.edu	37	chr16	67035550	67035550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctctgttgagggataGcactgatgagaaaactgagc	12	8	2	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67035550	T	T	67035550	1	4	2	0	1	0	0	0	0	0	0	0	3303	986	34	3		3	CES8	16	67035550	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	11148903	67035550	23319203	559	1031											
MTSS1L	92154	broad.mit.edu	37	chr16	70712199	70712199	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgcagaagcggccccGctcctcgatcagcgcccggc	14	16	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70712199	A	A	70712199	3	1	2	1	0	0	0	0	1	0	0	0	10057	1086	38	4	1695	4	MTSS1L	16	70712199	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3676649	70712199	19642554	560	1032											
HYDIN	54768	broad.mit.edu	37	chr16	70893944	70893944	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagagtgatctaagccttgGgttgagtggttctcatctgc	12	8	3	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70893944	A	A	70893944	1	1	2	0	1	0	0	0	0	0	0	0	7537	1247	43	4		4	HYDIN	16	70893944	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	181745	70893944	19460809	561	1033											
ZNF19	7567	broad.mit.edu	37	chr16	71512893	71512893	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaagtgcacagccacatcctCgaaggtcaccatctcctaaa	7	14	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71512893	G	G	71512893	3	3	2	1	0	0	0	0	1	0	0	0	17881	893	31	4	1339	4	ZNF19	16	71512893	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	618949	71512893	18841860	562	1034											
BCMO1	53630	broad.mit.edu	37	chr16	81320986	81320986	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacccctgtttgtgcccgcGccaggtgccaaggatgagga	14	12	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81320986	A	A	81320986	2	1	2	1	0	0	0	0	0	0	0	1	1389	1074	38	4		4	BCMO1	16	81320986	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	9808093	81320986	9033767	563	1035											
GAN	8139	broad.mit.edu	37	chr16	81388292	81388292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcttgagaagttaaacGttggcaatgaaagatatgtc	9	5	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81388292	T	T	81388292	3	4	2	1	0	0	0	0	1	0	0	0	6294	1145	40	3	575	3	GAN	16	81388292	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	67306	81388292	8966461	564	1036											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2901471	2901471	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccccaaaacatctttcatGattttcctaactggcttata	3	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2901471	T	T	2901471	1	4	2	0	1	0	0	0	0	0	0	0	13146	1305	45	3		3	RAP1GAP2	17	2901471	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08		2901471	78293739	565	1037											
P2RX5	5026	broad.mit.edu	37	chr17	3593568	3593568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccaggacagttaatttGctcatgctggggaggccgtc	13	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3593568	T	T	3593568	1	4	2	0	1	0	0	0	0	0	0	0	11437	1334	46	3		3	P2RX5	17	3593568	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	692097	3593568	77601642	566	1038											
DULLARD	23399	broad.mit.edu	37	chr17	7150664	7150664	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtttggtactgaattaccTacaaatagcacaaaagagga	8	7	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7150664	A	A	7150664	5	1	2	1	0	0	0	0	0	0	1	0	4839	1536	53	5	661	5	DULLARD	17	7150664	Splice_Site	SNP	T	TCGA-05-4249-01A-01D-1105-08	3557096	7150664	74044546	567	1039											
NLGN2	57555	broad.mit.edu	37	chr17	7317981	7317981	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcttctctactcccaGgttttctcagcaccggggac	7	16	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7317981	T	T	7317981	5	4	2	1	0	0	0	0	0	0	1	0	10557	1014	35	2	672	2	NLGN2	17	7317981	Splice_Site	SNP	G	TCGA-05-4249-01A-01D-1105-08	167317	7317981	73877229	568	1040											
C17orf68	80169	broad.mit.edu	37	chr17	8141519	8141519	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaactccaacgggggaaCagaaaaagatggcccaacca	11	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8141519	A	A	8141519	2	1	2	1	0	0	0	0	0	0	0	1	1892	465	17	3		3	C17orf68	17	8141519	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	823538	8141519	73053691	569	1041											
MYH1	4619	broad.mit.edu	37	chr17	10403991	10403991	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgaggtcattgatcaGccgctgctgctcctcttcct	10	13	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10403991	A	A	10403991	2	1	2	1	0	0	0	0	0	0	0	1	10123	962	34	4		4	MYH1	17	10403991	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	2262472	10403991	70791219	570	1042											
MYH1	4619	broad.mit.edu	37	chr17	10405338	10405338	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactatttttctatgaattaGgcagatttgtcccattgatt	6	6	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10405338	A	A	10405338	1	1	2	0	1	0	0	0	0	0	0	0	10123	1015	35	4		4	MYH1	17	10405338	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1347	10405338	70789872	571	1043											
C17orf48	56985	broad.mit.edu	37	chr17	10608454	10608454	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatgccctgttgtgtccttCagcttggagatatcatcgat	10	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10608454	T	T	10608454	4	4	2	1	0	0	0	0	0	1	0	0	1875	827	29	4	213	4	C17orf48	17	10608454	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	203116	10608454	70586756	572	1044											
DNAH9	1770	broad.mit.edu	37	chr17	11805970	11805970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccatctggcccctcaatcCcccaacacaatgcaaatgac	5	17	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11805970	A	A	11805970	1	1	2	0	1	0	0	0	0	0	0	0	4648	638	22	2		2	DNAH9	17	11805970	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1197516	11805970	69389240	573	1045											
MYOCD	93649	broad.mit.edu	37	chr17	12661232	12661232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaccaccaatgaacccaCagtagcattcactactgtta	5	15	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12661232	A	A	12661232	1	1	2	0	1	0	0	0	0	0	0	0	10181	493	17	3		3	MYOCD	17	12661232	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	855262	12661232	68533978	574	1046											
ZNF286A	57335	broad.mit.edu	37	chr17	15620368	15620368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatgagtgtaatgaatgtGggaaaaccttcagccggagc	12	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15620368	T	T	15620368	3	4	2	1	0	0	0	0	1	0	0	0	17949	1348	47	2	1348	2	ZNF286A	17	15620368	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	2959136	15620368	65574842	575	1047											
MYO15A	51168	broad.mit.edu	37	chr17	18023558	18023558	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagttccgcctcttcccgCgaccccaggtgaagctgttt	10	15	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18023558	T	T	18023558	4	4	2	1	0	0	0	0	0	1	0	0	10157	760	27	4	1446	4	MYO15A	17	18023558	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2403190	18023558	63171652	576	1048											
LGALS9C	654346	broad.mit.edu	37	chr17	18394415	18394415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccatctgtcttctccagGgtcctaacctttgcctctcc	5	18	4	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18394415	T	T	18394415	1	4	2	0	1	0	0	0	0	0	0	0	8822	1247	43	2		2	LGALS9C	17	18394415	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	370857	18394415	62800795	577	1049											
CCDC144B	284047	broad.mit.edu	37	chr17	18513266	18513266	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagtaaacacaaagcacaTtttaccagaaaaagttttaa	6	6	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18513266	G	G	18513266	1	3	2	0	1	0	0	0	0	0	0	0	2804	1508	52	5		5	CCDC144B	17	18513266	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	118851	18513266	62681944	578	1050											
CYTSB	92521	broad.mit.edu	37	chr17	20217341	20217341	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgactggcagagtgtgatgcAgtacgtggcccaaatctaca	12	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20217341	T	T	20217341	3	4	2	1	0	0	0	0	1	0	0	0	4243	188	7	5	3294	5	CYTSB	17	20217341	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	1704075	20217341	60977869	579	1051											
KSR1	8844	broad.mit.edu	37	chr17	25948905	25948905	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccgacaggctctgcattgGggctatgattctgatgctgt	12	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25948905	C	C	25948905	1	2	2	0	1	0	0	0	0	0	0	0	8653	1247	43	4		4	KSR1	17	25948905	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	5731564	25948905	55246305	580	1052											
SUPT6H	6830	broad.mit.edu	37	chr17	27011938	27011938	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcgactgccccattttaccAaacggcgaactgcatggaga	9	12	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27011938	T	T	27011938	4	4	2	1	0	0	0	0	0	1	0	0	15518	131	5	5	2516	5	SUPT6H	17	27011938	Nonsense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	1063033	27011938	54183272	581	1053											
FNDC8	54752	broad.mit.edu	37	chr17	33448781	33448781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagaaagaaaacttcaaCatgatgaatgcccttgacca	7	9	1	6			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33448781	A	A	33448781	3	1	2	1	0	0	0	0	1	0	0	0	6032	477	17	3	71	3	FNDC8	17	33448781	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	6436843	33448781	47746429	582	1054											
CCL23	6368	broad.mit.edu	37	chr17	34340789	34340789	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcttggcacctacatgacAcccggcttggagcactcgct	11	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34340789	C	C	34340789	2	2	2	1	0	0	0	0	0	0	0	1	2923	146	6	5		5	CCL23	17	34340789	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	892008	34340789	46854421	583	1055											
ERBB2	2064	broad.mit.edu	37	chr17	37868024	37868024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgctgatcccgtctgGttgttgtgaggggtaaatgg	15	7	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37868024	T	T	37868024	1	4	2	0	1	0	0	0	0	0	0	0	5248	1276	44	3		3	ERBB2	17	37868024	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3527235	37868024	43327186	584	1056											
WIPF2	147179	broad.mit.edu	37	chr17	38416675	38416675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggaactcctgacttcaaGtgatccacctgccttggcct	8	14	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38416675	T	T	38416675	1	4	2	0	1	0	0	0	0	0	0	0	17495	1044	36	3		3	WIPF2	17	38416675	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	548651	38416675	42778535	585	1057											
KRTAP1-1	81851	broad.mit.edu	37	chr17	39197262	39197262	+	Frame_Shift_Del	DEL	G	-	-													caccacgcagcaggggggcaGgcaggtaccctccacacggc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39197262	-	-	39197262	7	5	2	1	0	1	0	1	0	0	0	0	8573	991	35	0	149	0	KRTAP1-1	17	39197262	Frame_Shift_Del	DEL	G	TCGA-05-4249-01A-01D-1105-08	780587	39197262	41997948	586	1058											
KRT33B	3884	broad.mit.edu	37	chr17	39521447	39521447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttgtgctgggcctgcaGctcgatctccagggcattga	14	11	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39521447	T	T	39521447	3	4	2	1	0	0	0	0	1	0	0	0	8541	962	34	3	370	3	KRT33B	17	39521447	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	324185	39521447	41673763	587	1059											
KRT38	8687	broad.mit.edu	37	chr17	39594386	39594386	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggttccggtacgtggcaatCtcattctccagccgggtctt	11	12	3	0	rs72828202	byFrequency;by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39594386	A	A	39594386	3	1	2	1	0	0	0	0	1	0	0	0	8546	912	32	3	178	3	KRT38	17	39594386	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	72939	39594386	41600824	588	1060											
BECN1	8678	broad.mit.edu	37	chr17	40966604	40966604	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaacacagtctggccccaAgcagcattaatctcattcca	6	14	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40966604	G	G	40966604	2	3	2	1	0	0	0	0	0	0	0	1	1401	59	3	5		5	BECN1	17	40966604	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	1372218	40966604	40228606	589	1061											
RUNDC1	146923	broad.mit.edu	37	chr17	41143406	41143406	+	Frame_Shift_Del	DEL	G	-	-													tccttcgcccttcctgttacGggaggcactgttgtcacccc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41143406	-	-	41143406	7	5	2	1	0	1	0	1	0	0	0	0	13853	1103	39	0	1533	0	RUNDC1	17	41143406	Frame_Shift_Del	DEL	G	TCGA-05-4249-01A-01D-1105-08	176802	41143406	40051804	590	1062											
SLC4A1	6521	broad.mit.edu	37	chr17	42340147	42340147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggctcttccacccccaaCgaagataggagtctaggacc	11	13	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42340147	A	A	42340147	1	1	2	0	1	0	0	0	0	0	0	0	14764	551	19	3		3	SLC4A1	17	42340147	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1196741	42340147	38855063	591	1063											
DCAKD	79877	broad.mit.edu	37	chr17	43111525	43111525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggccctggaaggaggccCcgccccccgccccaggccct	12	22	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43111525	A	A	43111525	1	1	2	0	1	0	0	0	0	0	0	0	4312	638	22	2		2	DCAKD	17	43111525	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	771378	43111525	38083685	592	1064											
C17orf46	124783	broad.mit.edu	37	chr17	43331893	43331896	+	Intron	DEL	AGAG	-	-													gcactgagctgcaacacaaaAgagagagtgtcacttgggcc							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43331896	-	-	43331893	6	5	2	0	1	1	0	1	0	0	0	0	1873	87	3	0		0	C17orf46	17	43331893	Intron	DEL	AGAG	TCGA-05-4249-01A-01D-1105-08	220368	43331893	37863317	593	1065											
HOXB4	3214	broad.mit.edu	37	chr17	46655326	46655326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttctgggcgcagggaggcGgcggggggctgctgctgacc	22	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46655326	T	T	46655326	3	4	2	1	0	0	0	0	1	0	0	0	7370	1116	39	1	407	1	HOXB4	17	46655326	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3323433	46655326	34539884	594	1066											
GIP	2695	broad.mit.edu	37	chr17	47041781	47041781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcccttccgcgtacctggGgcctcgaggttgagggctgc	15	13	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47041781	A	A	47041781	3	1	2	1	0	0	0	0	1	0	0	0	6455	1232	43	4	329	4	GIP	17	47041781	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	386455	47041781	34153429	595	1067											
IGF2BP1	10642	broad.mit.edu	37	chr17	47121275	47121275	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggcaggggagtggagggTttctgggccatgctacttgg	18	7	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47121275	G	G	47121275	1	3	2	0	1	0	0	0	0	0	0	0	7643	1740	60	5		5	IGF2BP1	17	47121275	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	79494	47121275	34073935	596	1068											
NGFR	4804	broad.mit.edu	37	chr17	47583901	47583901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgtgtgcgaggagtgccCcgacggcacgtattccgacg	14	14	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47583901	A	A	47583901	3	1	2	1	0	0	0	0	1	0	0	0	10491	623	22	2	459	2	NGFR	17	47583901	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	462626	47583901	33611309	597	1069											
MYCBPAP	84073	broad.mit.edu	37	chr17	48597186	48597186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccagctagcatcttgtgCctggcccggaggcagggtag	15	11	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48597186	T	T	48597186	1	4	2	0	1	0	0	0	0	0	0	0	10113	754	26	4		4	MYCBPAP	17	48597186	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1013285	48597186	32598024	598	1070											
BCAS3	54828	broad.mit.edu	37	chr17	59445833	59445833	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccgagtcacctagccgGgacgtcgtgggatccggaac	15	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59445833	T	T	59445833	2	4	2	1	0	0	0	0	0	0	0	1	1357	1219	43	2		2	BCAS3	17	59445833	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	10848647	59445833	21749377	599	1071											
ICAM2	3384	broad.mit.edu	37	chr17	62081303	62081303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagtgggttgcagtgtcAggatgacctgccttggaggc	15	9	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62081303	T	T	62081303	3	4	2	1	0	0	0	0	1	0	0	0	7550	188	7	5	485	5	ICAM2	17	62081303	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	2635470	62081303	19113907	600	1072											
NAT9	26151	broad.mit.edu	37	chr17	72769927	72769927	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacagggctaacatagggctCaaagaagacccaaagggtta	12	8	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72769927	G	G	72769927	1	3	2	0	1	0	0	0	0	0	0	0	10276	841	29	4		4	NAT9	17	72769927	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	10688624	72769927	8425283	601	1073											
GGA3	23163	broad.mit.edu	37	chr17	73237911	73237911	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccagcaaagctgggatcaCagcgcacgtcttcttgccac	9	14	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73237911	G	G	73237911	1	3	2	0	1	0	0	0	0	0	0	0	6418	493	17	4		4	GGA3	17	73237911	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	467984	73237911	7957299	602	1074											
DNAH17	8632	broad.mit.edu	37	chr17	76567765	76567765	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccatccagcagcgcctgGgctgagtctttgctcagcac	11	15	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76567765	T	T	76567765	1	4	2	0	1	0	0	0	0	0	0	0	4641	1219	43	2		2	DNAH17	17	76567765	5'Flank	SNP	G	TCGA-05-4249-01A-01D-1105-08	3329854	76567765	4627445	603	1075											
LRRC45	201255	broad.mit.edu	37	chr17	79985707	79985707	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtgaacctgtgtgcaagtCctgtttgcaaagcagaggtg	14	7	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79985707	A	A	79985707	1	1	2	0	1	0	0	0	0	0	0	0	9089	870	30	3		3	LRRC45	17	79985707	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3417942	79985707	1209503	604	1076											
GPS1	2873	broad.mit.edu	37	chr17	80011904	80011904	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtacgaggagatccaccGcaagctctcagaggccacca	10	14	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80011904	A	A	80011904	3	1	2	1	0	0	0	0	1	0	0	0	6798	1087	38	4	454	4	GPS1	17	80011904	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	26197	80011904	1183306	605	1077											
PTPRM	5797	broad.mit.edu	37	chr18	8370828	8370829	+	Intron	DNP	TG	AT	AT													aatcatagtgtgacccatcaTgggaggaactccaaaaaaac							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	8370829	AT	AT	8370828	1	1	2	0	1	0	0	0	0	0	0	0	12914	1479	51	5		5	PTPRM	18	8370828	Intron	DNP	TG	TCGA-05-4249-01A-01D-1105-08		8370828	69706420	606	1078											
KIAA1012	22878	broad.mit.edu	37	chr18	29446938	29446938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaagagctttagtcttgCctgtggagatatttaagtca	12	5	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29446938	A	A	29446938	3	1	2	1	0	0	0	0	1	0	0	0	8274	753	26	3	1891	3	KIAA1012	18	29446938	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	21076110	29446938	48630310	607	1079											
SETBP1	26040	broad.mit.edu	37	chr18	42533267	42533267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccttcaagatgaaccGcaaggagagaagttcttatg	10	9	2	3	rs149638556	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42533267	T	T	42533267	3	4	2	1	0	0	0	0	1	0	0	0	14242	1087	38	3	4165	3	SETBP1	18	42533267	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	13086329	42533267	35543981	608	1080											
C18orf54	162681	broad.mit.edu	37	chr18	51892230	51892230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaacttatttaaagatAtatgaataatatgtagatac	4	2	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51892230	G	G	51892230	1	3	2	0	1	0	0	0	0	0	0	0	1922	464	16	5		5	C18orf54	18	51892230	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	9358963	51892230	26185018	609	1081											
CDH7	1005	broad.mit.edu	37	chr18	63511297	63511297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattcttccaatagccctGtgaggtaaaaactcattgtt	7	9	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63511297	T	T	63511297	3	4	2	1	0	0	0	0	1	0	0	0	3145	1377	48	3	1253	3	CDH7	18	63511297	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	11619067	63511297	14565951	610	1082											
PIP5K1C	23396	broad.mit.edu	37	chr19	3642713	3642713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacagaccagagctgccCtggctctggctgtaagaaaa	10	12	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3642713	A	A	3642713	1	1	2	0	1	0	0	0	0	0	0	0	12036	696	24	2		2	PIP5K1C	19	3642713	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08		3642713	55486270	611	1083											
PLIN4	729359	broad.mit.edu	37	chr19	4511380	4511380	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggtcaccccactgccaagGgtgttctttgtacctgttgc	10	14	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4511380	C	C	4511380	2	2	2	1	0	0	0	0	0	0	0	1	12187	1219	43	4		4	PLIN4	19	4511380	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	868667	4511380	54617603	612	1084											
LONP1	9361	broad.mit.edu	37	chr19	5694281	5694281	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagcacaccaccccccGccagaggccgttcagagcca	8	21	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5694281	A	A	5694281	1	1	2	0	1	0	0	0	0	0	0	0	8979	1102	38	4		4	LONP1	19	5694281	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1182901	5694281	53434702	613	1085											
KHSRP	8570	broad.mit.edu	37	chr19	6417152	6417152	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaagaagagcccacccCagagccctgcaacgccgcct	8	16	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6417152	G	G	6417152	1	3	2	0	1	0	0	0	0	0	0	0	8221	609	21	4		4	KHSRP	19	6417152	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	722871	6417152	52711831	614	1086											
TRIP10	9322	broad.mit.edu	37	chr19	6750571	6750571	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggacacccccatttacacGgagtttgatgaggatttcga	10	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6750571	A	A	6750571	2	1	2	1	0	0	0	0	0	0	0	1	16679	1103	39	4		4	TRIP10	19	6750571	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	333419	6750571	52378412	615	1087											
CD209	30835	broad.mit.edu	37	chr19	7805561	7805561	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacatgaggagtggttgctGagagagcagaaggcacaaga	15	5	0	5			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7805561	T	T	7805561	1	4	2	0	1	0	0	0	0	0	0	0	3014	1305	45	3		3	CD209	19	7805561	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	1054990	7805561	51323422	616	1088											
CLEC4M	10332	broad.mit.edu	37	chr19	7830367	7830367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacctggctctccttggcCttctgtgctgccttctccag	9	15	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7830367	A	A	7830367	1	1	2	0	1	0	0	0	0	0	0	0	3550	696	24	2		2	CLEC4M	19	7830367	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	24806	7830367	51298616	617	1089											
MUC16	94025	broad.mit.edu	37	chr19	9062932	9062932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctctggtgacactgtgaGctgagcaaagcctgagatgg	14	8	1	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9062932	T	T	9062932	3	4	2	1	0	0	0	0	1	0	0	0	10067	971	34	3	19337	3	MUC16	19	9062932	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1232565	9062932	50066051	618	1090											
COL5A3	50509	broad.mit.edu	37	chr19	10080331	10080332	+	Frame_Shift_Ins	INS	-	T	T													cccattggacccgtcctcccINStgggggcccatcaggacctg							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10080332	T	T	10080331	7	5	2	1	0	1	1	0	0	0	0	0	3730	681	24	0	1267	0	COL5A3	19	10080331	Frame_Shift_Ins	INS	-	TCGA-05-4249-01A-01D-1105-08	1017399	10080331	49048652	619	1091											
ZNF490	57474	broad.mit.edu	37	chr19	12719994	12719994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgagtcttgatgctttgtCcatggtgttcactgttctgc	10	8	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12719994	T	T	12719994	3	4	2	1	0	0	0	0	1	0	0	0	18068	855	30	4	1465	4	ZNF490	19	12719994	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2639663	12719994	46408989	620	1092											
CYP4F12	66002	broad.mit.edu	37	chr19	15791370	15791370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccagatggagtcttgggGtggagggaccatggacacat	16	8	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15791370	T	T	15791370	1	4	2	0	1	0	0	0	0	0	0	0	4220	1276	44	3		3	CYP4F12	19	15791370	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3071376	15791370	43337613	621	1093											
DDX49	54555	broad.mit.edu	37	chr19	19038921	19038921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagctcagccatcccctgGtcctccctgtgccaggaccc	9	20	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19038921	T	T	19038921	1	4	2	0	1	0	0	0	0	0	0	0	4399	1276	44	3		3	DDX49	19	19038921	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	3247551	19038921	40090062	622	1094											
GATAD2A	54815	broad.mit.edu	37	chr19	19611894	19611894	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgactgtcgtcctggccCtctgacgtgagccatgtgct	11	15	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19611894	T	T	19611894	1	4	2	0	1	0	0	0	0	0	0	0	6322	696	24	4		4	GATAD2A	19	19611894	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	572973	19611894	39517089	623	1095											
ZNF493	284443	broad.mit.edu	37	chr19	21588789	21588789	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccaggactttgggaggccAaggcaggtggatcacctgag	15	10	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21588789	G	G	21588789	1	3	2	0	1	0	0	0	0	0	0	0	18071	145	5	5		5	ZNF493	19	21588789	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	1976895	21588789	37540194	624	1096											
ZNF208	7757	broad.mit.edu	37	chr19	22154366	22154366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaattttcttatgataaCtaagggttgaggaccactta	8	5	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22154366	A	A	22154366	3	1	2	1	0	0	0	0	1	0	0	0	17892	565	20	3	376	3	ZNF208	19	22154366	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	565577	22154366	36974617	625	1097											
POP4	10775	broad.mit.edu	37	chr19	30102776	30102776	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactttgctgcagatacagcCttttcctccctctccatgaa	6	14	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30102776	G	G	30102776	3	3	2	1	0	0	0	0	1	0	0	0	12347	681	24	4	306	4	POP4	19	30102776	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	7948410	30102776	29026207	626	1098											
ZNF536	9745	broad.mit.edu	37	chr19	30935349	30935350	+	Frame_Shift_Ins	INS	-	T	T													ggagctggaccgccacatccINSgcatcttgcacaagccctac							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935350	T	T	30935349	7	5	2	1	0	1	1	0	0	0	0	0	18101	652	23	0	882	0	ZNF536	19	30935349	Frame_Shift_Ins	INS	-	TCGA-05-4249-01A-01D-1105-08	832573	30935349	28193634	627	1099											
ZNF507	22847	broad.mit.edu	37	chr19	32847439	32847439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttgtactaggccatgaaaGcaatgaacctgttcttctac	8	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32847439	T	T	32847439	1	4	2	0	1	0	0	0	0	0	0	0	18080	986	34	3		3	ZNF507	19	32847439	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1912090	32847439	26281544	628	1100											
LIN37	55957	broad.mit.edu	37	chr19	36244981	36244981	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgccacccacacccccgGggccacccggagatgcctgc	11	21	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36244981	A	A	36244981	3	1	2	1	0	0	0	0	1	0	0	0	8880	1232	43	4	534	4	LIN37	19	36244981	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3397542	36244981	22884002	629	1101											
WDR62	284403	broad.mit.edu	37	chr19	36590594	36590594	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggcgccttaggctgaCtcccactccatgggggcagg	15	14	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36590594	T	T	36590594	1	4	2	0	1	0	0	0	0	0	0	0	17440	580	20	4		4	WDR62	19	36590594	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	345613	36590594	22538389	630	1102											
HKR1	284459	broad.mit.edu	37	chr19	37853356	37853356	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtggatatagggtccaGccctgaacggagggcagatc	16	8	0	2	rs143859791		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37853356	T	T	37853356	3	4	2	1	0	0	0	0	1	0	0	0	7261	971	34	3	673	3	HKR1	19	37853356	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1262762	37853356	21275627	631	1103											
ZNF527	84503	broad.mit.edu	37	chr19	37879423	37879423	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctgttaaggaaatctctActgggaaaagagacaatgaa	10	6	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37879423	G	G	37879423	3	3	2	1	0	0	0	0	1	0	0	0	18095	391	14	5	486	5	ZNF527	19	37879423	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	26067	37879423	21249560	632	1104											
FBXO27	126433	broad.mit.edu	37	chr19	39522510	39522510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgagatcccaccttggcCgcaggggttgcgaataaggt	13	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39522510	A	A	39522510	3	1	2	1	0	0	0	0	1	0	0	0	5794	652	23	1	513	1	FBXO27	19	39522510	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1643087	39522510	19606473	633	1105											
ZNF780B	163131	broad.mit.edu	37	chr19	40541960	40541960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttacaccagcatgaataCtttgatgctgagtaaggttt	9	6	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40541960	A	A	40541960	3	1	2	1	0	0	0	0	1	0	0	0	18282	565	20	3	1699	3	ZNF780B	19	40541960	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1019450	40541960	18587023	634	1106											
ZNF780A	284323	broad.mit.edu	37	chr19	40581109	40581109	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacattcatatggttttaTaccagcatgaatactctgat	5	8	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40581109	C	C	40581109	3	2	2	1	0	0	0	0	1	0	0	0	18281	1406	49	5	816	5	ZNF780A	19	40581109	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	39149	40581109	18547874	635	1107											
AKT2	208	broad.mit.edu	37	chr19	40741335	40741335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttcggagcaggcaggcCctgtatggcccttaatgatt	13	10	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40741335	A	A	40741335	1	1	2	0	1	0	0	0	0	0	0	0	480	638	22	2		2	AKT2	19	40741335	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	160226	40741335	18387648	636	1108											
CYP2F1	1572	broad.mit.edu	37	chr19	42027798	42027798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttcacacattcctcaagCgttgtgatgaacgtgttaca	7	10	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42027798	T	T	42027798	1	4	2	0	1	0	0	0	0	0	0	0	4204	783	27	4		4	CYP2F1	19	42027798	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1286463	42027798	17101185	637	1109											
PSG1	5669	broad.mit.edu	37	chr19	43348706	43348706	+	Frame_Shift_Del	DEL	G	-	-													cgcgaagcaggacaagtaaaGgttttgtcctgaacggtaat							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43348706	-	-	43348706	7	5	2	1	0	1	0	1	0	0	0	0	12759	1015	35	0		0	PSG1	19	43348706	Frame_Shift_Del	DEL	G	TCGA-05-4249-01A-01D-1105-08	1320908	43348706	15780277	638	1110											
PSG7	5676	broad.mit.edu	37	chr19	43430068	43430068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaacttcccattaattGtccaagaatactgtgccggt	8	10	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43430068	T	T	43430068	3	4	2	1	0	0	0	0	1	0	0	0	12766	1377	48	3	167	3	PSG7	19	43430068	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	81362	43430068	15698915	639	1111											
ZNF227	7770	broad.mit.edu	37	chr19	44740634	44740634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatcagagaggccacactgGagaaaaaccttacaaatgtg	9	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44740634	T	T	44740634	3	4	2	1	0	0	0	0	1	0	0	0	17907	1174	41	3	2065	3	ZNF227	19	44740634	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	1310566	44740634	14388349	640	1112											
CGB	1082	broad.mit.edu	37	chr19	49539682	49539682	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccggcatcttctattcagGacccaccacccggacacctg	7	18	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49539682	T	T	49539682	1	4	2	0	1	0	0	0	0	0	0	0	3326	1189	41	3		3	CGB	19	49539682	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	4799048	49539682	9589301	641	1113											
MED25	81857	broad.mit.edu	37	chr19	50334694	50334694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaataagcttctggcctgGagcggggtcctggagtggca	15	10	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50334694	T	T	50334694	3	4	2	1	0	0	0	0	1	0	0	0	9536	1183	41	3	1244	3	MED25	19	50334694	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	795012	50334694	8794289	642	1114											
SHANK1	50944	broad.mit.edu	37	chr19	51189549	51189549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggacgcgaggccaccgGgaccagggctttcgcttgca	15	14	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51189549	T	T	51189549	3	4	2	1	0	0	0	0	1	0	0	0	14377	1232	43	2	3979	2	SHANK1	19	51189549	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	854855	51189549	7939434	643	1115											
SIGLEC6	946	broad.mit.edu	37	chr19	52033903	52033903	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccctgtccccccacaccctCagggacccgggcgtcctggc	11	21	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52033903	T	T	52033903	1	4	2	0	1	0	0	0	0	0	0	0	14425	841	29	4		4	SIGLEC6	19	52033903	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	844354	52033903	7095080	644	1116											
SIGLEC6	946	broad.mit.edu	37	chr19	52034721	52034721	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcacagaccctcctgcacCgtcagtgactctggcccctc	8	19	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52034721	A	A	52034721	2	1	2	1	0	0	0	0	0	0	0	1	14425	639	23	1		1	SIGLEC6	19	52034721	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	818	52034721	7094262	645	1117											
ZNF616	90317	broad.mit.edu	37	chr19	52627140	52627140	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatacaaaaatgcacaagGgcgaatctgaacttctagaa	8	7	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52627140	A	A	52627140	1	1	2	0	1	0	0	0	0	0	0	0	18168	1247	43	4		4	ZNF616	19	52627140	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	592419	52627140	6501843	646	1118											
ZNF611	81856	broad.mit.edu	37	chr19	53218914	53218914	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaagttcatgtcactgggtCacaggagatggaatctcaga	11	9	4	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53218914	T	T	53218914	1	4	2	0	1	0	0	0	0	0	0	0	18164	841	29	4		4	ZNF611	19	53218914	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	591774	53218914	5910069	647	1119											
ZNF320	162967	broad.mit.edu	37	chr19	53384141	53384141	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacattcttcacattcgTaaagtttctctccagtatga	5	10	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53384141	C	C	53384141	3	2	2	1	0	0	0	0	1	0	0	0	17965	1638	57	5	295	5	ZNF320	19	53384141	Missense_Mutation	SNP	T	TCGA-05-4249-01A-01D-1105-08	165227	53384141	5744842	648	1120											
LILRB5	10990	broad.mit.edu	37	chr19	54756140	54756140	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccccttggccccagaccCctcccagcctgtgctcctgc	7	23	0	1	rs3889745		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54756140	T	T	54756140	1	4	2	0	1	0	0	0	0	0	0	0	8866	638	22	4		4	LILRB5	19	54756140	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1371999	54756140	4372843	649	1121											
LILRB2	10288	broad.mit.edu	37	chr19	54782754	54782754	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatctgtactggcccccgtAggagcggctcacagggccca	13	15	2	0	rs143661416	byFrequency	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54782754	G	G	54782754	3	3	2	1	0	0	0	0	1	0	0	0	8863	420	15	5	964	5	LILRB2	19	54782754	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	26614	54782754	4346229	650	1122											
LILRA5	353514	broad.mit.edu	37	chr19	54818626	54818626	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggcctcagatggtcttcCcgaacctcctaggaccatca	8	14	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54818626	A	A	54818626	1	1	2	0	1	0	0	0	0	0	0	0	8860	638	22	2		2	LILRA5	19	54818626	3'UTR	SNP	C	TCGA-05-4249-01A-01D-1105-08	35872	54818626	4310357	651	1123											
LILRA2	11027	broad.mit.edu	37	chr19	55086877	55086877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcgccctggttggcaGccccaggctgggctctccca	12	18	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55086877	T	T	55086877	3	4	2	1	0	0	0	0	1	0	0	0	8857	962	34	3	828	3	LILRA2	19	55086877	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	268251	55086877	4042106	652	1124											
LILRA1	11024	broad.mit.edu	37	chr19	55106723	55106723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcctgaactcacagcccCgtacccatgggtggtcccgg	11	15	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55106723	A	A	55106723	3	1	2	1	0	0	0	0	1	0	0	0	8856	652	23	1	531	1	LILRA1	19	55106723	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	19846	55106723	4022260	653	1125											
NLRP7	199713	broad.mit.edu	37	chr19	55450745	55450745	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccctcctccttctccaggGcgtagaacagggcagtgaga	11	15	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55450745	C	C	55450745	3	2	2	1	0	0	0	0	1	0	0	0	10577	1203	42	4	1703	4	NLRP7	19	55450745	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	344022	55450745	3678238	654	1126											
PTPRH	5794	broad.mit.edu	37	chr19	55711567	55711567	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctgctggttcttaacctCtcaccaaaacagggagtggc	9	13	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55711567	A	A	55711567	1	1	2	0	1	0	0	0	0	0	0	0	12911	928	32	3		3	PTPRH	19	55711567	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	260822	55711567	3417416	655	1127											
SUV420H2	84787	broad.mit.edu	37	chr19	55853579	55853579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccaggcatgccctctcccCcagccctgtgccccccctgc	7	24	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55853579	T	T	55853579	1	4	2	0	1	0	0	0	0	0	0	0	15533	638	22	4		4	SUV420H2	19	55853579	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	142012	55853579	3275404	656	1128											
ZNF460	10794	broad.mit.edu	37	chr19	57802481	57802481	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcatgagcagattctccCtcgtgtgaagccctatgatt	9	11	2	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57802481	T	T	57802481	3	4	2	1	0	0	0	0	1	0	0	0	18051	681	24	4	582	4	ZNF460	19	57802481	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1948902	57802481	1326502	657	1129											
ZNF416	55659	broad.mit.edu	37	chr19	58084737	58084737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccaatggggctaggaagtCcttcccaacctcactgctgg	11	14	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58084737	A	A	58084737	3	1	2	1	0	0	0	0	1	0	0	0	18020	855	30	3	1253	3	ZNF416	19	58084737	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	282256	58084737	1044246	658	1130											
A1BG	1	broad.mit.edu	37	chr19	58858921	58858921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaaggtgacgtcggggatGggtccctcgcagcgcaggac	17	11	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58858921	T	T	58858921	2	4	2	1	0	0	0	0	0	0	0	1	1	1335	47	2		2	A1BG	19	58858921	Silent	SNP	G	TCGA-05-4249-01A-01D-1105-08	774184	58858921	270062	659	1131											
NOP56	10528	broad.mit.edu	37	chr20	2638609	2638609	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccaaaaagaagaaaaagcAaaagccccaggaggttcctc	8	11	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2638609	C	C	2638609	3	2	2	1	0	0	0	0	1	0	0	0	10634	130	5	5	1500	5	NOP56	20	2638609	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08		2638609	60386911	660	1132											
VPS16	64601	broad.mit.edu	37	chr20	2846970	2846970	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcttgttgggtgcgtcaActgagggcctgtgggtgctg	17	8	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2846970	T	T	2846970	1	4	2	0	1	0	0	0	0	0	0	0	17320	58	2	5		5	VPS16	20	2846970	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	208361	2846970	60178550	661	1133											
PTPRA	5786	broad.mit.edu	37	chr20	3001866	3001866	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctgggggactttaatctGggctttgtgggctcttcctt	12	9	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3001866	C	C	3001866	1	2	2	0	1	0	0	0	0	0	0	0	12903	1363	47	4		4	PTPRA	20	3001866	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	154896	3001866	60023654	662	1134											
CRNKL1	51340	broad.mit.edu	37	chr20	20031146	20031146	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtttataatcatttaattCttcttcatctgtgatcttct	3	7	7	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20031146	A	A	20031146	4	1	2	1	0	0	0	0	0	1	0	0	3923	922	32	3	1943	3	CRNKL1	20	20031146	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	17029280	20031146	42994374	663	1135											
INSM1	3642	broad.mit.edu	37	chr20	20348899	20348899	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagccagtgccgtgccctcGggccgcgccaacatgccccg	13	19	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20348899	T	T	20348899	1	4	2	0	1	0	0	0	0	0	0	0	7841	1131	39	1		1	INSM1	20	20348899	5'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	317753	20348899	42676621	664	1136											
DEFB119	245932	broad.mit.edu	37	chr20	29978208	29978208	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaccaggaacccagacccccGagagaggttcacgttacctg	11	14	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29978208	A	A	29978208	1	1	2	0	1	0	0	0	0	0	0	0	4446	1073	37	4		4	DEFB119	20	29978208	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	9629309	29978208	33047312	665	1137											
TTLL9	164395	broad.mit.edu	37	chr20	30497492	30497493	+	Intron	DNP	GG	TT	TT													tgtggggctgggaggggagcGgggctgtgagcaggagctaa							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30497493	TT	TT	30497492	1	4	2	0	1	0	0	0	0	0	0	0	16860	1131	39	1		1	TTLL9	20	30497492	Intron	DNP	GG	TCGA-05-4249-01A-01D-1105-08	519284	30497492	32528028	666	1138											
KIF3B	9371	broad.mit.edu	37	chr20	30915258	30915258	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtcccacttacgtcagccTgcagtccagggagttacttg	10	14	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30915258	A	A	30915258	1	1	2	0	1	0	0	0	0	0	0	0	8371	1595	55	5		5	KIF3B	20	30915258	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	417766	30915258	32110262	667	1139											
KIAA1755	85449	broad.mit.edu	37	chr20	36868046	36868046	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctggggagcctgcagaaGcttctggcaaggcagccttt	13	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36868046	A	A	36868046	3	1	2	1	0	0	0	0	1	0	0	0	8327	971	34	4	2015	4	KIAA1755	20	36868046	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	5952788	36868046	26157474	668	1140											
BPI	671	broad.mit.edu	37	chr20	36938802	36938802	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcacctggagtggggataAtaacaaaacccgccttccag	9	13	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36938802	G	G	36938802	1	3	2	0	1	0	0	0	0	0	0	0	1499	116	4	5		5	BPI	20	36938802	Intron	SNP	A	TCGA-05-4249-01A-01D-1105-08	70756	36938802	26086718	669	1141											
LBP	3929	broad.mit.edu	37	chr20	36993140	36993140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagtgttccagccagcGtcccttcatcggactgtgta	11	13	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36993140	T	T	36993140	1	4	2	0	1	0	0	0	0	0	0	0	8723	1160	40	3		3	LBP	20	36993140	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	54338	36993140	26032380	670	1142											
L3MBTL	26013	broad.mit.edu	37	chr20	42162154	42162154	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgccccagtagctggctctCtagggtcagggtgagagaac	15	10	2	2	rs113657496		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42162154	T	T	42162154	1	4	2	0	1	0	0	0	0	0	0	0	8663	928	32	4		4	L3MBTL	20	42162154	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5169014	42162154	20863366	671	1143											
HNF4A	3172	broad.mit.edu	37	chr20	43048493	43048493	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgagtatgcctacctcaAagccatcatcttctttgacc	5	13	4	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43048493	C	C	43048493	3	2	2	1	0	0	0	0	1	0	0	0	7320	14	1	5	948	5	HNF4A	20	43048493	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	886339	43048493	19977027	672	1144											
UBE2C	11065	broad.mit.edu	37	chr20	44443866	44443866	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtctccaccagataagagGaaagcatcaggctaggcata	10	9	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44443866	T	T	44443866	1	4	2	0	1	0	0	0	0	0	0	0	16972	1189	41	3		3	UBE2C	20	44443866	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1395373	44443866	18581654	673	1145											
PLTP	5360	broad.mit.edu	37	chr20	44531074	44531074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcccccactctgggaccCgtaccatagtcatgctggac	10	16	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44531074	A	A	44531074	1	1	2	0	1	0	0	0	0	0	0	0	12209	667	23	1		1	PLTP	20	44531074	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	87208	44531074	18494446	674	1146											
SLC35C2	51006	broad.mit.edu	37	chr20	44983627	44983627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcgggggacaggcacCatcaggtctggtccggccct	17	13	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44983627	A	A	44983627	1	1	2	0	1	0	0	0	0	0	0	0	14694	609	21	2		2	SLC35C2	20	44983627	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	452553	44983627	18041893	675	1147											
PTGIS	5740	broad.mit.edu	37	chr20	48131009	48131009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagggacacagctcgggcCaagacagaggggccagtagg	17	11	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48131009	A	A	48131009	1	1	2	0	1	0	0	0	0	0	0	0	12858	609	21	2		2	PTGIS	20	48131009	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	3147382	48131009	14894511	676	1148											
B4GALT5	9334	broad.mit.edu	37	chr20	48263366	48263366	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttgaagaggagccaggaGcacaactttcacaaaccctg	10	11	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48263366	A	A	48263366	1	1	2	0	1	0	0	0	0	0	0	0	1279	986	34	4		4	B4GALT5	20	48263366	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	132357	48263366	14762154	677	1149											
BIRC7	79444	broad.mit.edu	37	chr20	61870735	61870735	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcagtccagccgaggcccaGagggcgtggtgggttcttga	17	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61870735	T	T	61870735	3	4	2	1	0	0	0	0	1	0	0	0	1445	933	33	3	697	3	BIRC7	20	61870735	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	13607369	61870735	1154785	678	1150											
TPTE	7179	broad.mit.edu	37	chr21	10922019	10922019	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaagaaaagaagttagttCaagaacatacgtggtataaa	9	3	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10922019	A	A	10922019	1	1	2	0	1	0	0	0	0	0	0	0	16554	841	29	3		3	TPTE	21	10922019	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08		10922019	37207876	679	1151											
TPTE	7179	broad.mit.edu	37	chr21	10942681	10942681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaaaaagtgaagtaataCaagtaaatcaacggttaagt	8	4	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10942681	A	A	10942681	1	1	2	0	1	0	0	0	0	0	0	0	16554	493	17	3		3	TPTE	21	10942681	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	20662	10942681	37187214	680	1152											
BAGE2	85319	broad.mit.edu	37	chr21	11038750	11038750	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggaccgaggtctaccaGgagaaaattttctcttagta	10	7	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11038750	T	T	11038750	1	4	2	0	1	0	0	0	0	0	0	0	1297	1015	35	2		2	BAGE2	21	11038750	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	96069	11038750	37091145	681	1153											
BAGE2	85319	broad.mit.edu	37	chr21	11047629	11047629	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagcattaatgatggcttatCtttaaacttatgttttgcaa	6	5	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11047629	A	A	11047629	1	1	2	0	1	0	0	0	0	0	0	0	1297	928	32	3		3	BAGE2	21	11047629	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	8879	11047629	37082266	682	1154											
BAGE2	85319	broad.mit.edu	37	chr21	11049484	11049484	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactttgcactcaggacattGccaacctgcacgttttaatg	7	12	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11049484	C	C	11049484	1	2	2	0	1	0	0	0	0	0	0	0	1297	1334	46	4		4	BAGE2	21	11049484	3'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	1855	11049484	37080411	683	1155											
POTED	317754	broad.mit.edu	37	chr21	14983042	14983042	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgtcatgctcagggacactGacatgaacaagagggacaag	12	9	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14983042	T	T	14983042	3	4	2	1	0	0	0	0	1	0	0	0	12359	1290	45	3	495	3	POTED	21	14983042	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3933558	14983042	33146853	684	1156											
APP	351	broad.mit.edu	37	chr21	27369608	27369608	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaagaaggtgatgatgcTggagttatgtgaaccaagca	13	5	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27369608	A	A	27369608	1	1	2	0	1	0	0	0	0	0	0	0	817	1595	55	5		5	APP	21	27369608	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	12386566	27369608	20760287	685	1157											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296491	28296491	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctggtgtgccaacctgtgtCacaggtcctagagcaggcga	13	11	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28296491	G	G	28296491	3	3	2	1	0	0	0	0	1	0	0	0	269	826	29	4	122	4	ADAMTS5	21	28296491	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	926883	28296491	19833404	686	1158											
GRIK1	2897	broad.mit.edu	37	chr21	30959669	30959669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacacctcttgtgaattcaGtgattctcaaacttaccttg	5	11	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30959669	T	T	30959669	1	4	2	0	1	0	0	0	0	0	0	0	6839	1044	36	3		3	GRIK1	21	30959669	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	2663178	30959669	17170226	687	1159											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31798219	31798219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtttctagagcaacaGttgtaggacatgttgacggg	14	5	1	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31798219	T	T	31798219	3	4	2	1	0	0	0	0	1	0	0	0	8595	1020	36	3	510	3	KRTAP13-3	21	31798219	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	838550	31798219	16331676	688	1160											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253670	32253670	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagtgggctcacagcaggtCtcttgacagtggtccaggag	15	10	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32253670	G	G	32253670	3	3	2	1	0	0	0	0	1	0	0	0	8588	912	32	4	321	4	KRTAP11-1	21	32253670	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	455451	32253670	15876225	689	1161											
TIAM1	7074	broad.mit.edu	37	chr21	32825388	32825388	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctgggagatatattggatCttctgtttggagaggataaa	12	3	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32825388	A	A	32825388	1	1	2	0	1	0	0	0	0	0	0	0	16013	928	32	3		3	TIAM1	21	32825388	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	571718	32825388	15304507	690	1162											
SON	6651	broad.mit.edu	37	chr21	34922564	34922564	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctaagattgccagagcagCctgtagacgtaccatcggag	12	11	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34922564	T	T	34922564	3	4	2	1	0	0	0	0	1	0	0	0	15040	739	26	4	1037	4	SON	21	34922564	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2097176	34922564	13207331	691	1163											
SON	6651	broad.mit.edu	37	chr21	34923302	34923302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagttgtcggggcagcctGtggcaactggggcactagag	18	8	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34923302	T	T	34923302	3	4	2	1	0	0	0	0	1	0	0	0	15040	1377	48	3	1775	3	SON	21	34923302	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	738	34923302	13206593	692	1164											
SETD4	54093	broad.mit.edu	37	chr21	37412861	37412861	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagcttaagaccaacacaTgtgaaacttacaatttctca	4	10	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37412861	G	G	37412861	1	3	2	0	1	0	0	0	0	0	0	0	14246	1479	51	5		5	SETD4	21	37412861	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	2489559	37412861	10717034	693	1165											
DOPEY2	9980	broad.mit.edu	37	chr21	37618548	37618548	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctctttgaggagagtctcAttaacttgggtcaggaccag	12	9	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37618548	T	T	37618548	3	4	2	1	0	0	0	0	1	0	0	0	4748	217	8	5	4340	5	DOPEY2	21	37618548	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	205687	37618548	10511347	694	1166											
HLCS	3141	broad.mit.edu	37	chr21	38137445	38137445	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagaaagagcacatcccacAgggctcagccacacattccc	8	15	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38137445	G	G	38137445	2	3	2	1	0	0	0	0	0	0	0	1	7280	175	7	5		5	HLCS	21	38137445	Silent	SNP	A	TCGA-05-4249-01A-01D-1105-08	518897	38137445	9992450	695	1167											
ETS2	2114	broad.mit.edu	37	chr21	40191577	40191577	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgaagatgactgcagccagtCtctctgcctcaataagccaa	8	13	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40191577	T	T	40191577	3	4	2	1	0	0	0	0	1	0	0	0	5318	913	32	4	988	4	ETS2	21	40191577	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	2054132	40191577	7938318	696	1168											
TRPM2	7226	broad.mit.edu	37	chr21	45815244	45815244	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctgacaggctccgccagTgactctgagccaggcggccc	12	17	2	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45815244	A	A	45815244	1	1	2	0	1	0	0	0	0	0	0	0	16711	1711	59	5		5	TRPM2	21	45815244	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	5623667	45815244	2314651	697	1169											
TRPM2	7226	broad.mit.edu	37	chr21	45821808	45821808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacccgcttttccacgccCcagcccggggccacccactt	7	23	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45821808	A	A	45821808	1	1	2	0	1	0	0	0	0	0	0	0	16711	638	22	2		2	TRPM2	21	45821808	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	6564	45821808	2308087	698	1170											
COL6A2	1292	broad.mit.edu	37	chr21	47541582	47541582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggggttcggggcagctgcCtgaggagcaggacagggggc	21	8	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47541582	A	A	47541582	1	1	2	0	1	0	0	0	0	0	0	0	3732	696	24	2		2	COL6A2	21	47541582	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1719774	47541582	588313	699	1171											
COL6A2	1292	broad.mit.edu	37	chr21	47542430	47542430	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaaaaggcgagcccggCccacgcggccccgaggtatg	16	13	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47542430	G	G	47542430	2	3	2	1	0	0	0	0	0	0	0	1	3732	726	26	4		4	COL6A2	21	47542430	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	848	47542430	587465	700	1172											
CCT8L2	150160	broad.mit.edu	37	chr22	17072057	17072057	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcatttctgccatcacgtCtgagacagctaagcctgcat	7	13	4	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17072057	G	G	17072057	3	3	2	1	0	0	0	0	1	0	0	0	2991	913	32	4	293	4	CCT8L2	22	17072057	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08		17072057	34232509	701	1173			1	1		8	8	1339	N	G_C	6.086942e-15
CCT8L2	150160	broad.mit.edu	37	chr22	17072155	17072155	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccactgggcccttccaatCtgcttcctttatcagaaagc	7	15	2	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17072155	T	T	17072155	3	4	2	1	0	0	0	0	1	0	0	0	2991	913	32	4	391	4	CCT8L2	22	17072155	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	98	17072155	34232411	702	1174			1	1		8	8	1339	N	G_C	6.086942e-15
CCT8L2	150160	broad.mit.edu	37	chr22	17072228	17072228	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctggaatcagtctgggatCttgacatagctggaaatagg	12	7	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17072228	G	G	17072228	3	3	2	1	0	0	0	0	1	0	0	0	2991	913	32	4	464	4	CCT8L2	22	17072228	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	73	17072228	34232338	703	1175			1	1		8	8	1339	N	G_C	6.086942e-15
CCT8L2	150160	broad.mit.edu	37	chr22	17072351	17072351	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgcctgtacattcccattCaaataccacagccaaaccat	4	14	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17072351	G	G	17072351	3	3	2	1	0	0	0	0	1	0	0	0	2991	835	29	4	587	4	CCT8L2	22	17072351	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	123	17072351	34232215	704	1176			1	1		8	8	1339	N	G_C	6.086942e-15
CCT8L2	150160	broad.mit.edu	37	chr22	17072376	17072376	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacagccaaaccatctccCagctcctgcctgtaaaccct	4	19	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17072376	G	G	17072376	2	3	2	1	0	0	0	0	0	0	0	1	2991	581	21	4		4	CCT8L2	22	17072376	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	25	17072376	34232190	705	1177			1	1		8	8	1339	N	G_C	6.086942e-15
CCT8L2	150160	broad.mit.edu	37	chr22	17073279	17073279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggaacttctgccggccGtgggggccatagcaaggccg	15	13	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17073279	T	T	17073279	3	4	2	1	0	0	0	0	1	0	0	0	2991	1136	40	3	1515	3	CCT8L2	22	17073279	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	903	17073279	34231287	706	1178			1	1		8	8	1339	N	G_C	6.086942e-15
CCT8L2	150160	broad.mit.edu	37	chr22	17073380	17073380	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctggactcctcgggctctCccttgggttcagtgccagcc	11	15	3	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17073380	T	T	17073380	3	4	2	1	0	0	0	0	1	0	0	0	2991	864	30	4	1616	4	CCT8L2	22	17073380	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	101	17073380	34231186	707	1179			1	1		8	8	1339	N	G_C	6.086942e-15
CCT8L2	150160	broad.mit.edu	37	chr22	17073395	17073395	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctcccttgggttcagtgCcagccgctggggcagctcca	13	15	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17073395	T	T	17073395	3	4	2	1	0	0	0	0	1	0	0	0	2991	739	26	4	1631	4	CCT8L2	22	17073395	Missense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	15	17073395	34231171	708	1180			1	1		8	8	1339	N	G_C	6.086942e-15
CECR1	51816	broad.mit.edu	37	chr22	17669446	17669446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaccctgccaccactgcCgggacctttgtcacacagcc	8	17	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17669446	A	A	17669446	1	1	2	0	1	0	0	0	0	0	0	0	3235	667	23	1		1	CECR1	22	17669446	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	596051	17669446	33635120	709	1181											
MICAL3	57553	broad.mit.edu	37	chr22	18301671	18301671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagtgggctgggtgggggCgtggaggccgccacgggtgg	26	7	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18301671	A	A	18301671	2	1	2	1	0	0	0	0	0	0	0	1	9664	755	27	3		3	MICAL3	22	18301671	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	632225	18301671	33002895	710	1182											
BPIL2	254240	broad.mit.edu	37	chr22	32841392	32841392	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattagccgggcatggtggCgggcacctgtagtcccagct	14	11	0	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32841392	G	G	32841392	1	3	2	0	1	0	0	0	0	0	0	0	1501	783	27	4		4	BPIL2	22	32841392	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	14539721	32841392	18463174	711	1183											
APOBEC3F	200316	broad.mit.edu	37	chr22	39445556	39445556	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaaagcaccactcacctgtCtcctggaagaggggcgtctt	11	12	3	1	rs34578066	by1000genomes	TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39445556	G	G	39445556	2	3	2	1	0	0	0	0	0	0	0	1	795	900	32	4		4	APOBEC3F	22	39445556	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	6604164	39445556	11859010	712	1184											
L3MBTL2	83746	broad.mit.edu	37	chr22	41615532	41615532	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggatcgcctctgtcatccAgacagcaggtgagtgtttgg	13	10	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41615532	T	T	41615532	3	4	2	1	0	0	0	0	1	0	0	0	8664	188	7	5	732	5	L3MBTL2	22	41615532	Missense_Mutation	SNP	A	TCGA-05-4249-01A-01D-1105-08	2169976	41615532	9689034	713	1185											
WBP2NL	164684	broad.mit.edu	37	chr22	42321608	42321608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtcacagccttccctcCctcccctagaagactcctct	4	20	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42321608	A	A	42321608	1	1	2	0	1	0	0	0	0	0	0	0	17387	638	22	2		2	WBP2NL	22	42321608	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	706076	42321608	8982958	714	1186											
EFCAB6	64800	broad.mit.edu	37	chr22	44168670	44168670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaacttcaactgctcaGtggcaacagtggggacaaag	10	9	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44168670	T	T	44168670	1	4	2	0	1	0	0	0	0	0	0	0	4979	1044	36	3		3	EFCAB6	22	44168670	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	1847062	44168670	7135896	715	1187											
PNPLA5	150379	broad.mit.edu	37	chr22	44276817	44276817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggggctcgggaagggtaGgtgaaaccacgtgggtgcag	19	8	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44276817	T	T	44276817	1	4	2	0	1	0	0	0	0	0	0	0	12263	1015	35	2		2	PNPLA5	22	44276817	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	108147	44276817	7027749	716	1188											
PARVB	29780	broad.mit.edu	37	chr22	44527413	44527413	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgaggtgacacagtcCgaaatagggcagaaacagaa	14	7	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44527413	T	T	44527413	2	4	2	1	0	0	0	0	0	0	0	1	11563	639	23	4		4	PARVB	22	44527413	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	250596	44527413	6777153	717	1189											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45110461	45110461	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgcagtgttttcttccctCtgcccccagcatccacaacg	6	17	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45110461	G	G	45110461	1	3	2	0	1	0	0	0	0	0	0	0	12707	928	32	4		4	PRR5-ARHGAP8	22	45110461	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	583048	45110461	6194105	718	1190											
ARHGAP6	395	broad.mit.edu	37	chrX	11312822	11312822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagactaatgtagattatGtgtgttttatggagcattca	9	3	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11312822	T	T	11312822	1	4	2	0	1	0	0	0	0	0	0	0	889	1392	48	3		3	ARHGAP6	23	11312822	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08		11312822	143957738	719	1191											
TLR8	51311	broad.mit.edu	37	chrX	12938519	12938519	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacgtcatatccggaaaCgacgctcaacagattttgag	8	10	3	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12938519	T	T	12938519	4	4	2	1	0	0	0	0	0	1	0	0	16080	528	19	4	1366	4	TLR8	23	12938519	Nonsense_Mutation	SNP	C	TCGA-05-4249-01A-01D-1105-08	1625697	12938519	142332041	720	1192											
BEND2	139105	broad.mit.edu	37	chrX	18238752	18238752	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgactagccaatcctgcCgcccctgaatggccacctaa	7	16	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18238752	T	T	18238752	1	4	2	0	1	0	0	0	0	0	0	0	1403	667	23	4		4	BEND2	23	18238752	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	5300233	18238752	137031808	721	1193											
GPR64	10149	broad.mit.edu	37	chrX	19012897	19012897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaccacattttgatccaCtagtcatatatgtattaata	6	7	1	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19012897	A	A	19012897	1	1	2	0	1	0	0	0	0	0	0	0	6770	580	20	3		3	GPR64	23	19012897	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	774145	19012897	136257663	722	1194											
FTHL17	53940	broad.mit.edu	37	chrX	31090140	31090140	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgagggcagcagctgaggtGacaagaatggcggatagtga	18	6	0	4			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31090140	T	T	31090140	1	4	2	0	1	0	0	0	0	0	0	0	6143	1305	45	3		3	FTHL17	23	31090140	5'UTR	SNP	G	TCGA-05-4249-01A-01D-1105-08	12077243	31090140	124180420	723	1195											
SSX3	10214	broad.mit.edu	37	chrX	48214519	48214519	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatctcccctgagaccctgcTccttgtctccagtatctctg	7	16	3	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48214519	A	A	48214519	1	1	2	0	1	0	0	0	0	0	0	0	15323	1566	54	5		5	SSX3	23	48214519	Intron	SNP	T	TCGA-05-4249-01A-01D-1105-08	17124379	48214519	107056041	724	1196											
WAS	7454	broad.mit.edu	37	chrX	48546470	48546470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacgtggggtgggacccCcagaatggatttgacgtgag	16	9	0	3			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48546470	A	A	48546470	2	1	2	1	0	0	0	0	0	0	0	1	17378	610	22	2		2	WAS	23	48546470	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	331951	48546470	106724090	725	1197											
FAAH2	158584	broad.mit.edu	37	chrX	57421225	57421225	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaaccaccaggatgtcGcctttatttacctcctcatc	6	14	1	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57421225	A	A	57421225	1	1	2	0	1	0	0	0	0	0	0	0	5400	1102	38	4		4	FAAH2	23	57421225	Intron	SNP	G	TCGA-05-4249-01A-01D-1105-08	8874755	57421225	97849335	726	1198											
OGT	8473	broad.mit.edu	37	chrX	70774416	70774416	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatatcaatttaggaaatgtCttgaaagaggcacgcatttt	8	5	2	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70774416	G	G	70774416	2	3	2	1	0	0	0	0	0	0	0	1	10942	900	32	4		4	OGT	23	70774416	Silent	SNP	C	TCGA-05-4249-01A-01D-1105-08	13353191	70774416	84496144	727	1199											
COL4A5	1287	broad.mit.edu	37	chrX	107814662	107814662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaacgtggatttccagGcagtcccggttttcctggtt	14	9	0	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107814662	T	T	107814662	3	4	2	1	0	0	0	0	1	0	0	0	3726	1203	42	3	430	3	COL4A5	23	107814662	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	37040246	107814662	47455898	728	1200											
ALG13	79868	broad.mit.edu	37	chrX	110988103	110988103	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accacctccaccttattcctGtgatccaagcggcagtgatt	7	14	0	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110988103	A	A	110988103	3	1	2	1	0	0	0	0	1	0	0	0	515	1377	48	4	3139	4	ALG13	23	110988103	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	3173441	110988103	44282457	729	1201											
TRPC5	7224	broad.mit.edu	37	chrX	111020010	111020010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggcaccactggaccttGgcatggttctgatgagaggt	14	9	1	2			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111020010	T	T	111020010	3	4	2	1	0	0	0	0	1	0	0	0	16707	1348	47	2	472	2	TRPC5	23	111020010	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	31907	111020010	44250550	730	1202											
LHFPL1	340596	broad.mit.edu	37	chrX	111874652	111874652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttctttcaaagctcaaGgtttgaggcaatggtcaagc	9	8	5	1			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111874652	T	T	111874652	3	4	2	1	0	0	0	0	1	0	0	0	8836	1000	35	2	7	2	LHFPL1	23	111874652	Missense_Mutation	SNP	G	TCGA-05-4249-01A-01D-1105-08	854642	111874652	43395908	731	1203											
FAM58A	92002	broad.mit.edu	37	chrX	152860006	152860006	+	Frame_Shift_Del	DEL	T	-	-													ccagttccccagtatgtaccTtgtgtggatgctggaaggag							TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152860006	-	-	152860006	7	5	2	1	0	1	0	1	0	0	0	0	5641	1623	56	0	330	0	FAM58A	23	152860006	Frame_Shift_Del	DEL	T	TCGA-05-4249-01A-01D-1105-08	40985354	152860006	2410554	732	1204											
MPP1	4354	broad.mit.edu	37	chrX	154009732	154009732	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaactttccatcattccCagtactactgttcttgttcc	3	13	2	0			TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154009732	T	T	154009732	1	4	2	0	1	0	0	0	0	0	0	0	9827	609	21	4		4	MPP1	23	154009732	Intron	SNP	C	TCGA-05-4249-01A-01D-1105-08	1149726	154009732	1260828	733	1205											
AGRN	375790	broad.mit.edu	37	chr1	957682	957682	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcggctttggagaccccctCatctgtgacaaccaggtgtc	11	13	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	957682	T	T	957682	2	4	3	1	0	0	0	0	0	0	0	1	397	813	29	4		4	AGRN	1	957682	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08		957682	248292939	1	1206											
CHD5	26038	broad.mit.edu	37	chr1	6172549	6172549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtcctagtgctcctccCcgaccacatcaggaccaccc	7	20	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6172549	A	A	6172549	1	1	3	0	1	0	0	0	0	0	0	0	3359	638	22	2		2	CHD5	1	6172549	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	5214867	6172549	243078072	2	1207											
RNF207	388591	broad.mit.edu	37	chr1	6272205	6272205	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcgagttctcccagctgctGaagctgggagccattcctcc	10	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6272205	A	A	6272205	1	1	3	0	1	0	0	0	0	0	0	0	13585	1305	45	4		4	RNF207	1	6272205	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	99656	6272205	242978416	3	1208											
KIF1B	23095	broad.mit.edu	37	chr1	10327434	10327434	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcactttactaatttgttcAtaggtgagctacatggaaat	7	6	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10327434	G	G	10327434	1	3	3	0	1	0	0	0	0	0	0	0	8354	232	8	5		5	KIF1B	1	10327434	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	4055229	10327434	238923187	4	1209											
KIF1B	23095	broad.mit.edu	37	chr1	10364334	10364334	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgagaagtcaagatcacAtccaagttagcaagcagcac	9	9	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10364334	T	T	10364334	1	4	3	0	1	0	0	0	0	0	0	0	8354	217	8	5		5	KIF1B	1	10364334	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	36900	10364334	238886287	5	1210											
MTOR	2475	broad.mit.edu	37	chr1	11290882	11290882	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctacacgagccaatatcctAtaatttctcagtaatccagc	5	12	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11290882	G	G	11290882	1	3	3	0	1	0	0	0	0	0	0	0	10048	464	16	5		5	MTOR	1	11290882	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	926548	11290882	237959739	6	1211											
UBIAD1	29914	broad.mit.edu	37	chr1	11345877	11345877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccattccaacaacaccaggGacatggagtccgaccgggag	11	13	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11345877	A	A	11345877	3	1	3	1	0	0	0	0	1	0	0	0	17011	1174	41	4	712	4	UBIAD1	1	11345877	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	54995	11345877	237904744	7	1212											
PTCHD2	57540	broad.mit.edu	37	chr1	11575322	11575322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtgaatggtgaccaggGttggggagaagagacaggac	19	4	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11575322	T	T	11575322	1	4	3	0	1	0	0	0	0	0	0	0	12839	1276	44	3		3	PTCHD2	1	11575322	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	229445	11575322	237675299	8	1213											
PRDM2	7799	broad.mit.edu	37	chr1	14096547	14096547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatgtcgttcatgctgcGgttgaggcgccttggtaccc	13	12	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14096547	T	T	14096547	1	4	3	0	1	0	0	0	0	0	0	0	12564	1131	39	1		1	PRDM2	1	14096547	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2521225	14096547	235154074	9	1214											
KLHDC7A	127707	broad.mit.edu	37	chr1	18809215	18809215	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgaaccaggcccggccGcactgccggctggtggccct	14	18	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18809215	T	T	18809215	2	4	3	1	0	0	0	0	0	0	0	1	8431	1074	38	3		3	KLHDC7A	1	18809215	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	4712668	18809215	230441406	10	1215											
UBR4	23352	broad.mit.edu	37	chr1	19505708	19505708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactcctagctgctgcaacaGtgtgttctgacaagaaagac	9	11	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19505708	C	C	19505708	3	2	3	1	0	0	0	0	1	0	0	0	17030	1020	36	4	13716	4	UBR4	1	19505708	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	696493	19505708	229744913	11	1216											
HP1BP3	50809	broad.mit.edu	37	chr1	21072173	21072173	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacggggaaaaattagattaAaacacaagtcccatataaaa	6	6	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21072173	G	G	21072173	1	3	3	0	1	0	0	0	0	0	0	0	7395	29	1	5		5	HP1BP3	1	21072173	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1566465	21072173	228178448	12	1217											
HSPG2	3339	broad.mit.edu	37	chr1	22159808	22159808	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgatctcgaacttcctgTaggcatccttgatggtgggc	11	10	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22159808	G	G	22159808	3	3	3	1	0	0	0	0	1	0	0	0	7500	1638	57	5	2199	5	HSPG2	1	22159808	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	1087635	22159808	227090813	13	1218											
AIM1L	55057	broad.mit.edu	37	chr1	26663852	26663852	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggccccggaagccctcCttctcgtagcccacccagct	10	18	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26663852	A	A	26663852	3	1	3	1	0	0	0	0	1	0	0	0	431	680	24	2	1366	2	AIM1L	1	26663852	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	4504044	26663852	222586769	14	1219											
RPS6KA1	6195	broad.mit.edu	37	chr1	26872624	26872624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggctttgggctgtcctgGcccaggcctggccctgcagg	16	14	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26872624	T	T	26872624	1	4	3	0	1	0	0	0	0	0	0	0	13761	1218	42	3		3	RPS6KA1	1	26872624	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	208772	26872624	222377997	15	1220											
COL16A1	1307	broad.mit.edu	37	chr1	32163665	32163665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcagcttgtgccaacGcaagtcgaagagctggggca	13	11	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32163665	T	T	32163665	3	4	3	1	0	0	0	0	1	0	0	0	3705	1087	38	3	4579	3	COL16A1	1	32163665	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	5291041	32163665	217086956	16	1221											
SPOCD1	90853	broad.mit.edu	37	chr1	32262457	32262457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttccgccatacccctcCtctgggaagccctccaccct	5	20	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32262457	A	A	32262457	1	1	3	0	1	0	0	0	0	0	0	0	15196	696	24	2		2	SPOCD1	1	32262457	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	98792	32262457	216988164	17	1222											
GJA4	2701	broad.mit.edu	37	chr1	35260118	35260118	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcatttacctgtctcggCgagaagagcggctgcggcag	14	10	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35260118	A	A	35260118	2	1	3	1	0	0	0	0	0	0	0	1	6467	760	27	3		3	GJA4	1	35260118	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	2997661	35260118	213990503	18	1223											
KIAA0467	23334	broad.mit.edu	37	chr1	43908192	43908192	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttcgcctggtgcagtggcAgaatgcacgagcccatctca	13	12	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43908192	T	T	43908192	3	4	3	1	0	0	0	0	1	0	0	0	8248	188	7	5	5519	5	KIAA0467	1	43908192	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	8648074	43908192	205342429	19	1224											
HECTD3	79654	broad.mit.edu	37	chr1	45476310	45476310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggcgggctccgccctcCgccgggcggcacaccagcag	14	19	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45476310	A	A	45476310	2	1	3	1	0	0	0	0	0	0	0	1	7108	639	23	1		1	HECTD3	1	45476310	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	1568118	45476310	203774311	20	1225											
MOBKL2C	148932	broad.mit.edu	37	chr1	47075248	47075248	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgccttcagattccttcAggctcctgggggtcccctct	10	15	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47075248	T	T	47075248	1	4	3	0	1	0	0	0	0	0	0	0	9780	203	7	5		5	MOBKL2C	1	47075248	3'UTR	SNP	A	TCGA-05-4250-01A-01D-1105-08	1598938	47075248	202175373	21	1226											
EPS15	2060	broad.mit.edu	37	chr1	51937460	51937460	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atattttaaacaaaagtcatCtgaatgataaattaaatctc	3	5	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51937460	A	A	51937460	1	1	3	0	1	0	0	0	0	0	0	0	5234	928	32	3		3	EPS15	1	51937460	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4862212	51937460	197313161	22	1227											
ZYG11B	79699	broad.mit.edu	37	chr1	53245579	53245579	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcactgaagcgttacagtGaacgggcattctttgttcgg	12	8	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53245579	C	C	53245579	3	2	3	1	0	0	0	0	1	0	0	0	18382	1291	45	4	1020	4	ZYG11B	1	53245579	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1308119	53245579	196005042	23	1228											
USP24	23358	broad.mit.edu	37	chr1	55598341	55598341	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagggatggagattttgaGgactgagaacttgattcaga	14	4	1	5			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55598341	A	A	55598341	2	1	3	1	0	0	0	0	0	0	0	1	17181	987	35	4		4	USP24	1	55598341	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	2352762	55598341	193652280	24	1229											
DAB1	1600	broad.mit.edu	37	chr1	57476975	57476975	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaccacagaaaaagagacatCttaagtgcctggctgccatg	10	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57476975	T	T	57476975	1	4	3	0	1	0	0	0	0	0	0	0	4250	928	32	4		4	DAB1	1	57476975	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1878634	57476975	191773646	25	1230											
C1orf87	127795	broad.mit.edu	37	chr1	60463539	60463539	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcaccacccagagcttctCcaatctcttggccaaagatg	6	14	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60463539	A	A	60463539	1	1	3	0	1	0	0	0	0	0	0	0	2086	870	30	3		3	C1orf87	1	60463539	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2986564	60463539	188787082	26	1231											
SGIP1	84251	broad.mit.edu	37	chr1	67099861	67099861	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcaggtactctctgcttcTgtgtctcttctttgcttccg	7	13	5	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67099861	A	A	67099861	1	1	3	0	1	0	0	0	0	0	0	0	14319	1595	55	5		5	SGIP1	1	67099861	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	6636322	67099861	182150760	27	1232											
IL12RB2	3595	broad.mit.edu	37	chr1	67795269	67795269	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtttgtcctggttactaGtgaggcctcttcctccgtgg	11	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67795269	T	T	67795269	5	4	3	1	0	0	0	0	0	0	1	0	7697	1043	36	3	682	3	IL12RB2	1	67795269	Splice_Site	SNP	G	TCGA-05-4250-01A-01D-1105-08	695408	67795269	181455352	28	1233											
IL12RB2	3595	broad.mit.edu	37	chr1	67861719	67861719	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactcaccttctcctgtggtGataagctgactctggatcag	9	12	4	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67861719	C	C	67861719	3	2	3	1	0	0	0	0	1	0	0	0	7697	1290	45	4	2594	4	IL12RB2	1	67861719	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	66450	67861719	181388902	29	1234											
LRRC7	57554	broad.mit.edu	37	chr1	70488727	70488727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactcagagtgaaagaaaaAgagagtagaaaaatgataaa	9	2	1	6			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70488727	G	G	70488727	1	3	3	0	1	0	0	0	0	0	0	0	9107	87	3	5		5	LRRC7	1	70488727	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	2627008	70488727	178761894	30	1235											
CTH	1491	broad.mit.edu	37	chr1	70899568	70899568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgtacaggttgtacagGgatggtcaccttttatatta	10	6	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70899568	T	T	70899568	3	4	3	1	0	0	0	0	1	0	0	0	4043	1232	43	2	969	2	CTH	1	70899568	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	410841	70899568	178351053	31	1236											
ELTD1	64123	broad.mit.edu	37	chr1	79358799	79358799	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttatgttctcaaagcAactaacttctggtttcaacc	4	11	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79358799	C	C	79358799	3	2	3	1	0	0	0	0	1	0	0	0	5126	130	5	5	259	5	ELTD1	1	79358799	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	8459231	79358799	169891822	32	1237											
PRKACB	5567	broad.mit.edu	37	chr1	84610229	84610229	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactgccttatgggacagatCaagtaagttttgttttttaa	8	5	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84610229	G	G	84610229	1	3	3	0	1	0	0	0	0	0	0	0	12604	838	29	4		4	PRKACB	1	84610229	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	5251430	84610229	164640392	33	1238											
VCAM1	7412	broad.mit.edu	37	chr1	101198093	101198093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaaatcctgtggagcaggCagctccctaacggggagcta	13	11	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101198093	A	A	101198093	3	1	3	1	0	0	0	0	1	0	0	0	17264	711	25	3	1671	3	VCAM1	1	101198093	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	16587864	101198093	148052528	34	1239											
COL11A1	1301	broad.mit.edu	37	chr1	103364643	103364644	+	Intron	DNP	CA	AT	AT													cactaaactttagtttgtaaCagatgaataaattgtagttt							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	103364644	AT	AT	103364643	1	1	3	0	1	0	0	0	0	0	0	0	3699	493	17	3		3	COL11A1	1	103364643	Intron	DNP	CA	TCGA-05-4250-01A-01D-1105-08	2166550	103364643	145885978	35	1240											
AMPD2	271	broad.mit.edu	37	chr1	110173098	110173098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcccgggttgggtggggGgcggtggggggggcggtctc	25	8	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110173098	T	T	110173098	1	4	3	0	1	0	0	0	0	0	0	0	586	1247	43	2		2	AMPD2	1	110173098	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	6808455	110173098	139077523	36	1241											
PTGFRN	5738	broad.mit.edu	37	chr1	117504037	117504037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaatgtggtgaccagcgaGctgcttgcagtcatggacgg	15	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117504037	T	T	117504037	3	4	3	1	0	0	0	0	1	0	0	0	12856	962	34	3	1404	3	PTGFRN	1	117504037	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	7330939	117504037	131746584	37	1242											
GDAP2	54834	broad.mit.edu	37	chr1	118461089	118461089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagctttcaaaagcagttTttatttagttttaacaaaag	7	4	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118461089	A	A	118461089	1	1	3	0	1	0	0	0	0	0	0	0	6372	1856	64	5		5	GDAP2	1	118461089	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	957052	118461089	130789532	38	1243											
NBPF10	100132406	broad.mit.edu	37	chr1	145330171	145330171	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgatgacatgttttcagcGaaggctgaattactcctact	8	8	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145330171	A	A	145330171	1	1	3	0	1	0	0	0	0	0	0	0	10287	1073	37	4		4	NBPF10	1	145330171	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	26869082	145330171	103920450	39	1244											
NBPF10	100132406	broad.mit.edu	37	chr1	145362115	145362115	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcttagcagggagctgctGgatgagaaagagcctgaagt	16	6	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145362115	A	A	145362115	2	1	3	1	0	0	0	0	0	0	0	1	10287	1335	47	4		4	NBPF10	1	145362115	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	31944	145362115	103888506	40	1245											
FMO5	2330	broad.mit.edu	37	chr1	146672938	146672938	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctatagcctgtggcaaagaTaacagcatcaatgtcatcct	8	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146672938	A	A	146672938	3	1	3	1	0	0	0	0	1	0	0	0	6016	1406	49	5	777	5	FMO5	1	146672938	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	1310823	146672938	102577683	41	1246											
FMO5	2330	broad.mit.edu	37	chr1	146680354	146680354	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctttactattagccagtgtGaagagtccttattcttgtgc	9	8	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146680354	A	A	146680354	1	1	3	0	1	0	0	0	0	0	0	0	6016	1305	45	4		4	FMO5	1	146680354	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	7416	146680354	102570267	42	1247											
TARS2	80222	broad.mit.edu	37	chr1	150477145	150477145	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgtccagtcctcattcacCgagcagtgctcggttctgtg	11	13	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150477145	T	T	150477145	4	4	3	1	0	0	0	0	0	1	0	0	15679	644	23	4	1814	4	TARS2	1	150477145	Nonsense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	3796791	150477145	98773476	43	1248											
POGZ	23126	broad.mit.edu	37	chr1	151400975	151400975	+	Intron	DEL	C	-	-													ctttactggaaagattatttCcccaaactgatggatgatca							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151400975	-	-	151400975	6	5	3	0	1	1	0	1	0	0	0	0	12281	870	30	0		0	POGZ	1	151400975	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	923830	151400975	97849646	44	1249											
TDRKH	11022	broad.mit.edu	37	chr1	151743591	151743591	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctacatgggctttgagGtggtcagaccagatcaccct	11	11	3	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151743591	A	A	151743591	1	1	3	0	1	0	0	0	0	0	0	0	15859	1261	44	4		4	TDRKH	1	151743591	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	342616	151743591	97507030	45	1250											
HRNR	388697	broad.mit.edu	37	chr1	152192787	152192787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagccagtcccatgttggcCggagctgggagactgccctg	14	12	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152192787	A	A	152192787	3	1	3	1	0	0	0	0	1	0	0	0	7426	652	23	1	7238	1	HRNR	1	152192787	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	449196	152192787	97057834	46	1251											
CRNN	49860	broad.mit.edu	37	chr1	152382438	152382438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgtctgggtctgtccctGttctctagcccctccgtggc	11	16	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152382438	T	T	152382438	3	4	3	1	0	0	0	0	1	0	0	0	3924	1386	48	3	371	3	CRNN	1	152382438	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	189651	152382438	96868183	47	1252											
CRCT1	54544	broad.mit.edu	37	chr1	152487955	152487955	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccggcgcccaccccggcGcccgcctcctcctcctcctg	9	26	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152487955	T	T	152487955	2	4	3	1	0	0	0	0	0	0	0	1	3885	1074	38	3		3	CRCT1	1	152487955	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	105517	152487955	96762666	48	1253											
S100A4	6275	broad.mit.edu	37	chr1	153516469	153516469	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccaggaccagacccagtttCtactcccagaccagagttca	8	15	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153516469	T	T	153516469	1	4	3	0	1	0	0	0	0	0	0	0	13891	928	32	4		4	S100A4	1	153516469	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1028514	153516469	95734152	49	1254											
GATAD2B	57459	broad.mit.edu	37	chr1	153789863	153789863	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaccggttgataattgatGgcgggattcatgttgggtgt	14	5	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153789863	A	A	153789863	2	1	3	1	0	0	0	0	0	0	0	1	6323	1335	47	4		4	GATAD2B	1	153789863	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	273394	153789863	95460758	50	1255											
NUP210L	91181	broad.mit.edu	37	chr1	153968137	153968137	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtttgacataccaacgtagGctttcctacaatacagcctc	6	13	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153968137	A	A	153968137	1	1	3	0	1	0	0	0	0	0	0	0	10856	1218	42	4		4	NUP210L	1	153968137	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	178274	153968137	95282484	51	1256											
CHRNB2	1141	broad.mit.edu	37	chr1	154541836	154541836	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatccttagggatgtagggaGatactggttgggcctggatt	15	5	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154541836	A	A	154541836	1	1	3	0	1	0	0	0	0	0	0	0	3422	957	33	4		4	CHRNB2	1	154541836	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	573699	154541836	94708785	52	1257											
PAQR6	79957	broad.mit.edu	37	chr1	156214029	156214029	+	Frame_Shift_Del	DEL	T	-	-													aagcagcaataatgagtaggTtcccagctgcagccaagacc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156214029	-	-	156214029	7	5	3	1	0	1	0	1	0	0	0	0	11533	1725	60	0	380	0	PAQR6	1	156214029	Frame_Shift_Del	DEL	T	TCGA-05-4250-01A-01D-1105-08	1672193	156214029	93036592	53	1258											
C1orf92	149499	broad.mit.edu	37	chr1	156902558	156902558	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccccagcccctaacccAccctgccccaggaccatttt	5	21	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156902558	C	C	156902558	1	2	3	0	1	0	0	0	0	0	0	0	2091	174	6	5		5	C1orf92	1	156902558	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	688529	156902558	92348063	54	1259											
FCRL3	115352	broad.mit.edu	37	chr1	157660199	157660199	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccccaaggtgtcatcctcGtgataaaaccagtacaggat	8	11	1	1	rs141302640		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157660199	C	C	157660199	3	2	3	1	0	0	0	0	1	0	0	0	5853	1136	40	4	696	4	FCRL3	1	157660199	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	757641	157660199	91590422	55	1260											
SPTA1	6708	broad.mit.edu	37	chr1	158596791	158596791	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgttctgactttcctcctGcaacacctgtgagaagggga	10	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158596791	A	A	158596791	4	1	3	1	0	0	0	0	0	1	0	0	15234	1328	46	4	1636	4	SPTA1	1	158596791	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	936592	158596791	90653830	56	1261											
FCER1A	2205	broad.mit.edu	37	chr1	159272552	159272553	+	Intron	DNP	GG	TT	TT													gttggtccttaaaattccatGgatgtagatcttatccccac							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	159272553	TT	TT	159272552	1	4	3	0	1	0	0	0	0	0	0	0	5831	1363	47	2		2	FCER1A	1	159272552	Intron	DNP	GG	TCGA-05-4250-01A-01D-1105-08	675761	159272552	89978069	57	1262											
SLAMF7	57823	broad.mit.edu	37	chr1	160722056	160722056	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaagaagctttagagcTtaacttcatcttaatggttc	8	6	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160722056	A	A	160722056	1	1	3	0	1	0	0	0	0	0	0	0	14482	1624	56	5		5	SLAMF7	1	160722056	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	1449504	160722056	88528565	58	1263											
KLHDC9	126823	broad.mit.edu	37	chr1	161069916	161069916	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggatgaaacgcatgggccatCgcacctgcctttggaatgat	12	10	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161069916	T	T	161069916	3	4	3	1	0	0	0	0	1	0	0	0	8435	884	31	4	985	4	KLHDC9	1	161069916	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	347860	161069916	88180705	59	1264											
OLFML2B	25903	broad.mit.edu	37	chr1	161990089	161990089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcagagacctcagaaaaCtctgaaccacagagccaata	7	11	3	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161990089	A	A	161990089	1	1	3	0	1	0	0	0	0	0	0	0	10953	580	20	3		3	OLFML2B	1	161990089	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	920173	161990089	87260532	60	1265											
SH2D1B	117157	broad.mit.edu	37	chr1	162372583	162372583	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcggtatgtgtagacaatAtttttaaacctgtggaaaaa	8	4	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162372583	G	G	162372583	2	3	3	1	0	0	0	0	0	0	0	1	14344	446	16	5		5	SH2D1B	1	162372583	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	382494	162372583	86878038	61	1266											
MAEL	84944	broad.mit.edu	37	chr1	166960797	166960797	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaaatattttctgttcAttttgatcctccgtttcaaa	4	7	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166960797	C	C	166960797	1	2	3	0	1	0	0	0	0	0	0	0	9242	232	8	5		5	MAEL	1	166960797	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	4588214	166960797	82289824	62	1267											
ADCY10	55811	broad.mit.edu	37	chr1	167815391	167815391	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcttcatattccaacaggGgagaatctcaaacaacaact	5	11	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167815391	A	A	167815391	3	1	3	1	0	0	0	0	1	0	0	0	293	1232	43	4	2340	4	ADCY10	1	167815391	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	854594	167815391	81435230	63	1268											
FMO1	2326	broad.mit.edu	37	chr1	171250010	171250010	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacatggtgttcatgacacGctttcagaacatgttgagaa	11	7	2	3	rs141233517		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171250010	C	C	171250010	3	2	3	1	0	0	0	0	1	0	0	0	6012	1087	38	4	731	4	FMO1	1	171250010	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3434619	171250010	78000611	64	1269											
C1orf9	51430	broad.mit.edu	37	chr1	172558560	172558560	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagagagttctgttgagatCgataatgaaacagaacaaaa	9	5	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172558560	A	A	172558560	2	1	3	1	0	0	0	0	0	0	0	1	2089	874	31	3		3	C1orf9	1	172558560	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	1308550	172558560	76692061	65	1270											
TNR	7143	broad.mit.edu	37	chr1	175292368	175292368	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcggattcctgcgacatcCctgcttccttcacatactct	6	16	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175292368	G	G	175292368	1	3	3	0	1	0	0	0	0	0	0	0	16461	638	22	4		4	TNR	1	175292368	3'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	2733808	175292368	73958253	66	1271											
FAM5B	57795	broad.mit.edu	37	chr1	177250489	177250490	+	Missense_Mutation	DNP	GG	TT	TT													gctcattgagctcagggaccGggtgaaccagctttctccac							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	177250490	TT	TT	177250489	3	4	3	1	0	0	0	0	1	0	0	0	5644	1116	39	1	2203	1	FAM5B	1	177250489	Missense_Mutation	DNP	GG	TCGA-05-4250-01A-01D-1105-08	1958121	177250489	72000132	67	1272											
SEC16B	89866	broad.mit.edu	37	chr1	177910913	177910913	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catacatggtcaaagatggcCgtgggctccaattttatggc	11	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177910913	T	T	177910913	1	4	3	0	1	0	0	0	0	0	0	0	14100	667	23	4		4	SEC16B	1	177910913	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	660424	177910913	71339708	68	1273											
RASAL2	9462	broad.mit.edu	37	chr1	178442407	178442407	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggaaggagacagaaggaaAttgacccactctcctatctc	10	10	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178442407	G	G	178442407	1	3	3	0	1	0	0	0	0	0	0	0	13172	116	4	5		5	RASAL2	1	178442407	3'UTR	SNP	A	TCGA-05-4250-01A-01D-1105-08	531494	178442407	70808214	69	1274											
TOR1AIP1	26092	broad.mit.edu	37	chr1	179870363	179870363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttaatgttaaattatttGcttggtttttttaaattcag	5	3	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179870363	T	T	179870363	1	4	3	0	1	0	0	0	0	0	0	0	16496	1334	46	3		3	TOR1AIP1	1	179870363	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1427956	179870363	69380258	70	1275											
QSOX1	5768	broad.mit.edu	37	chr1	180159464	180159464	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccttcgaggtgatagactGagggacctcatttgtcttag	11	9	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180159464	A	A	180159464	1	1	3	0	1	0	0	0	0	0	0	0	12991	1305	45	4		4	QSOX1	1	180159464	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	289101	180159464	69091157	71	1276											
QSOX1	5768	broad.mit.edu	37	chr1	180159812	180159812	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcccttgaattgcccCactggctcccagctgccaga	9	16	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180159812	T	T	180159812	1	4	3	0	1	0	0	0	0	0	0	0	12991	609	21	4		4	QSOX1	1	180159812	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	348	180159812	69090809	72	1277											
CACNA1E	777	broad.mit.edu	37	chr1	181680017	181680017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagatgctctctctctGttgcttgattcactctttcc	6	13	5	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181680017	T	T	181680017	1	4	3	0	1	0	0	0	0	0	0	0	2568	1392	48	3		3	CACNA1E	1	181680017	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1520205	181680017	67570604	73	1278											
DHX9	1660	broad.mit.edu	37	chr1	182850644	182850644	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaatgatttctcatgccaAtttattttagaatgggtgga	10	4	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182850644	G	G	182850644	1	3	3	0	1	0	0	0	0	0	0	0	4556	116	4	5		5	DHX9	1	182850644	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1170627	182850644	66399977	74	1279											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185267224	185267241	+	In_Frame_Del	DEL	TTCCACCGTATTCAGAAA	-	-													tttgactcaaggttatagacTtccaccgtattcagaaattc					rs74908023	byFrequency;by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	185267241	-	-	185267224	7	5	3	1	0	1	0	1	0	0	0	0	8000	1606	56	0	60	0	IVNS1ABP	1	185267224	In_Frame_Del	DEL	TTCCACCGTATTCAGAAA	TCGA-05-4250-01A-01D-1105-08	2416580	185267224	63983397	75	1280											
FAM5C	339479	broad.mit.edu	37	chr1	190067753	190067754	+	Nonsense_Mutation	DNP	CC	AA	AA													ataaacagccaacactggctCcaaggtgctgtttttagtta							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	190067754	AA	AA	190067753	4	1	3	1	0	0	0	0	0	1	0	0	5645	864	30	3	608	3	FAM5C	1	190067753	Nonsense_Mutation	DNP	CC	TCGA-05-4250-01A-01D-1105-08	4800529	190067753	59182868	76	1281											
CRB1	23418	broad.mit.edu	37	chr1	197169702	197169702	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacagcttctgaaggggcgTgcccaagggtttcatggtct	13	9	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197169702	C	C	197169702	1	2	3	0	1	0	0	0	0	0	0	0	3880	1711	59	5		5	CRB1	1	197169702	5'Flank	SNP	T	TCGA-05-4250-01A-01D-1105-08	7101949	197169702	52080919	77	1282											
NR5A2	2494	broad.mit.edu	37	chr1	200014483	200014483	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaaatagtgcaatgagagGatttactggtgattttctta	9	5	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200014483	T	T	200014483	1	4	3	0	1	0	0	0	0	0	0	0	10731	1189	41	3		3	NR5A2	1	200014483	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2844781	200014483	49236138	78	1283											
LGR6	59352	broad.mit.edu	37	chr1	202287785	202287785	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcttcgcagacgggctccTctactgtcccgtggccttcc	9	17	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202287785	A	A	202287785	3	1	3	1	0	0	0	0	1	0	0	0	8830	1551	54	5	2571	5	LGR6	1	202287785	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	2273302	202287785	46962836	79	1284											
PIK3C2B	5287	broad.mit.edu	37	chr1	204403679	204403679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatgtcggtcacagatgcCcaagacgtacgtggccacgc	11	12	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204403679	A	A	204403679	3	1	3	1	0	0	0	0	1	0	0	0	12005	623	22	2	1370	2	PIK3C2B	1	204403679	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2115894	204403679	44846942	80	1285											
CNTN2	6900	broad.mit.edu	37	chr1	205033534	205033534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccttatcccctgccagcCccgggcagctccaaaggccg	10	18	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205033534	A	A	205033534	3	1	3	1	0	0	0	0	1	0	0	0	3673	623	22	2	1363	2	CNTN2	1	205033534	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	629855	205033534	44217087	81	1286											
C4BPA	722	broad.mit.edu	37	chr1	207287595	207287595	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagacgcttacctgtaattCtgatggcgaatgggtgtata	11	7	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207287595	A	A	207287595	3	1	3	1	0	0	0	0	1	0	0	0	2272	913	32	3	299	3	C4BPA	1	207287595	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2254061	207287595	41963026	82	1287											
HHAT	55733	broad.mit.edu	37	chr1	210637891	210637891	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctttttctacgtgaagtActtggtgctctttggcgtgc	11	9	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210637891	T	T	210637891	3	4	3	1	0	0	0	0	1	0	0	0	7156	391	14	5	1023	5	HHAT	1	210637891	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	3350296	210637891	38612730	83	1288											
NEK2	4751	broad.mit.edu	37	chr1	211836943	211836943	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgttctctttactttccCcactgaaatgaactttcttc	4	11	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211836943	T	T	211836943	3	4	3	1	0	0	0	0	1	0	0	0	10419	623	22	4	178	4	NEK2	1	211836943	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1199052	211836943	37413678	84	1289											
USH2A	7399	broad.mit.edu	37	chr1	215847654	215847654	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttggaggttccatcccTgagggtgctgaggggctggt	16	7	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215847654	C	C	215847654	2	2	3	1	0	0	0	0	0	0	0	1	17162	1567	55	5		5	USH2A	1	215847654	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	4010711	215847654	33402967	85	1290											
USH2A	7399	broad.mit.edu	37	chr1	216219877	216219877	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctttttgggtgggttccagGagagcagcaaagaactggga	15	7	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216219877	C	C	216219877	3	2	3	1	0	0	0	0	1	0	0	0	17162	1174	41	4	9551	4	USH2A	1	216219877	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	372223	216219877	33030744	86	1291											
USH2A	7399	broad.mit.edu	37	chr1	216420112	216420112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgattacagcgaagacctGttacccctaatttgcaagga	8	10	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216420112	T	T	216420112	3	4	3	1	0	0	0	0	1	0	0	0	17162	1377	48	3	13238	3	USH2A	1	216420112	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	200235	216420112	32830509	87	1292											
HLX	3142	broad.mit.edu	37	chr1	221055381	221055381	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaagggctttctgaatgagGgtggaatcgacagttaacac	13	7	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221055381	A	A	221055381	1	1	3	0	1	0	0	0	0	0	0	0	7283	1247	43	4		4	HLX	1	221055381	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	4635269	221055381	28195240	88	1293											
SUSD4	55061	broad.mit.edu	37	chr1	223396808	223396808	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccggggtatgctggggggctCtggtcgtccacgggtaaggg	20	9	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223396808	G	G	223396808	3	3	3	1	0	0	0	0	1	0	0	0	15528	912	32	4	253	4	SUSD4	1	223396808	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2341427	223396808	25853813	89	1294											
CNIH3	149111	broad.mit.edu	37	chr1	224927216	224927216	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctggaatcacgcagcaGctgggagccgagttaaccct	14	11	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224927216	T	T	224927216	1	4	3	0	1	0	0	0	0	0	0	0	3636	986	34	3		3	CNIH3	1	224927216	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	1530408	224927216	24323405	90	1295											
OBSCN	84033	broad.mit.edu	37	chr1	228462074	228462074	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcactgtgttggggctgcGcgcagaggacgcaggggagt	18	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228462074	A	A	228462074	3	1	3	1	0	0	0	0	1	0	0	0	10907	1087	38	4	5682	4	OBSCN	1	228462074	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3534858	228462074	20788547	91	1296											
OBSCN	84033	broad.mit.edu	37	chr1	228492382	228492382	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccatgtcatcctgttccCataattccccagaatccctt	4	15	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228492382	T	T	228492382	1	4	3	0	1	0	0	0	0	0	0	0	10907	609	21	4		4	OBSCN	1	228492382	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	30308	228492382	20758239	92	1297											
NUP133	55746	broad.mit.edu	37	chr1	229600668	229600668	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttaaagtaagggatctagtGatggctaaaggaaagactaa	12	3	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229600668	A	A	229600668	1	1	3	0	1	0	0	0	0	0	0	0	10849	1305	45	4		4	NUP133	1	229600668	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1108286	229600668	19649953	93	1298											
TAF5L	27097	broad.mit.edu	37	chr1	229738448	229738448	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgttatctaggaatgctcGaagcttgaagttagatagga	11	5	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229738448	A	A	229738448	4	1	3	1	0	0	0	0	0	1	0	0	15648	1066	37	4	1317	4	TAF5L	1	229738448	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	137780	229738448	19512173	94	1299											
URB2	9816	broad.mit.edu	37	chr1	229783584	229783584	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagtggcagcaaaacttTactgttgcaggataataata	9	5	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	229783584	G	G	229783584	1	3	3	0	1	0	0	0	0	0	0	0	17151	1769	61	5		5	URB2	1	229783584	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	45136	229783584	19467037	95	1300											
GALNT2	2590	broad.mit.edu	37	chr1	230378930	230378930	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatccagcaagtttacagtAatgtccgtgcccagaaagca	8	11	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230378930	G	G	230378930	1	3	3	0	1	0	0	0	0	0	0	0	6275	377	13	5		5	GALNT2	1	230378930	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	595346	230378930	18871691	96	1301											
C1orf124	83932	broad.mit.edu	37	chr1	231474384	231474384	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgctggggaaagaggcggGactggcagctttcctgcagc	16	12	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231474384	T	T	231474384	1	4	3	0	1	0	0	0	0	0	0	0	2012	1189	41	3		3	C1orf124	1	231474384	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1095454	231474384	17776237	97	1302											
PCNXL2	80003	broad.mit.edu	37	chr1	233136185	233136185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcgccccgccaggccgggtCgccctcgtggcagatgacca	14	17	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233136185	A	A	233136185	3	1	3	1	0	0	0	0	1	0	0	0	11686	884	31	3	1239	3	PCNXL2	1	233136185	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1661801	233136185	16114436	98	1303											
NID1	4811	broad.mit.edu	37	chr1	236176844	236176844	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcacagtagttgatgggGcgctggtccacgacagcttc	13	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236176844	T	T	236176844	2	4	3	1	0	0	0	0	0	0	0	1	10509	1190	42	3		3	NID1	1	236176844	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	3040659	236176844	13073777	99	1304											
HEATR1	55127	broad.mit.edu	37	chr1	236746143	236746143	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagtccctgctgtcttcttTcagttgttcaggattccacc	7	12	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236746143	C	C	236746143	3	2	3	1	0	0	0	0	1	0	0	0	7094	1792	62	5	4087	5	HEATR1	1	236746143	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	569299	236746143	12504478	100	1305											
HEATR1	55127	broad.mit.edu	37	chr1	236746281	236746281	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattcagttttgcagagtatCacatttaaaagattcacagc	6	8	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236746281	T	T	236746281	1	4	3	0	1	0	0	0	0	0	0	0	7094	841	29	4		4	HEATR1	1	236746281	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	138	236746281	12504340	101	1306											
ACTN2	88	broad.mit.edu	37	chr1	236925911	236925911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgcactctacggggagagcGatctgtgatgctgagcttct	13	11	3	3	rs142646143		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236925911	T	T	236925911	3	4	3	1	0	0	0	0	1	0	0	0	205	1058	37	3	2759	3	ACTN2	1	236925911	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	179630	236925911	12324710	102	1307											
GREM2	64388	broad.mit.edu	37	chr1	240656560	240656560	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcggctgcgtcttgcaCcagtcactcttgaggtactt	11	13	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240656560	G	G	240656560	3	3	3	1	0	0	0	0	1	0	0	0	6828	508	18	4	294	4	GREM2	1	240656560	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	3730649	240656560	8594061	103	1308											
RGS7	6000	broad.mit.edu	37	chr1	241262063	241262063	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtgctatgacgtcttccatCtaaacaataataacataatt	4	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241262063	T	T	241262063	5	4	3	1	0	0	0	0	0	0	1	0	13419	927	32	4	1449	4	RGS7	1	241262063	Splice_Site	SNP	C	TCGA-05-4250-01A-01D-1105-08	605503	241262063	7988558	104	1309											
AHCTF1	25909	broad.mit.edu	37	chr1	247063503	247063503	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacttacaacagactccaaTgaccacagtgcaaaataaga	5	11	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247063503	A	A	247063503	2	1	3	1	0	0	0	0	0	0	0	1	408	1451	51	5		5	AHCTF1	1	247063503	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	5801440	247063503	2187118	105	1310											
OR2G3	81469	broad.mit.edu	37	chr1	247769603	247769603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaggcacaaagccttcaGcacctgctcctcccacctta	7	17	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247769603	T	T	247769603	3	4	3	1	0	0	0	0	1	0	0	0	11093	971	34	3	718	3	OR2G3	1	247769603	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	706100	247769603	1481018	106	1311											
OR6F1	343169	broad.mit.edu	37	chr1	247875300	247875301	+	Missense_Mutation	DNP	CC	AA	AA													cgtgaaggaaaactgtggacCcataccaaatgagcaccacg					rs112992531		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	247875301	AA	AA	247875300	3	1	3	1	0	0	0	0	1	0	0	0	11295	623	22	2	172	2	OR6F1	1	247875300	Missense_Mutation	DNP	CC	TCGA-05-4250-01A-01D-1105-08	105697	247875300	1375321	107	1312											
OR2L3	391192	broad.mit.edu	37	chr1	248224140	248224140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatcttcttggacaccCatctccacacacccatgtat	3	16	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224140	A	A	248224140	3	1	3	1	0	0	0	0	1	0	0	0	11102	594	21	2	159	2	OR2L3	1	248224140	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	348840	248224140	1026481	108	1313											
OR2L13	284521	broad.mit.edu	37	chr1	248247310	248247310	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacacagcagatgtacatGgcgttttcgaagactgaagt	10	8	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247310	A	A	248247310	1	1	3	0	1	0	0	0	0	0	0	0	11100	1363	47	4		4	OR2L13	1	248247310	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	23170	248247310	1003311	109	1314											
OR2M3	127062	broad.mit.edu	37	chr1	248366751	248366751	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgctacactgccatttgcCaccctctaagatacaccaat	4	16	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248366751	G	G	248366751	3	3	3	1	0	0	0	0	1	0	0	0	11105	594	21	4	384	4	OR2M3	1	248366751	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	119441	248366751	883870	110	1315											
OR2T4	127074	broad.mit.edu	37	chr1	248524834	248524834	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacaatttgtttcagaggcTcaaattactttaaccccaag	5	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248524834	A	A	248524834	1	1	3	0	1	0	0	0	0	0	0	0	11121	1566	54	5		5	OR2T4	1	248524834	5'Flank	SNP	T	TCGA-05-4250-01A-01D-1105-08	158083	248524834	725787	111	1316											
ADAM17	6868	broad.mit.edu	37	chr2	9666321	9666321	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaccaccaataatttacaCgtgttcttcatgggatctgg	8	10	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9666321	A	A	9666321	2	1	3	1	0	0	0	0	0	0	0	1	238	523	19	3		3	ADAM17	2	9666321	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08		9666321	233533052	112	1317											
GREB1	9687	broad.mit.edu	37	chr2	11737793	11737793	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattcccctttccctcatcGctttgtgaatggggccgtct	8	13	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11737793	A	A	11737793	1	1	3	0	1	0	0	0	0	0	0	0	6826	1102	38	4		4	GREB1	2	11737793	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2071472	11737793	231461580	113	1318											
RAD51AP2	729475	broad.mit.edu	37	chr2	17696555	17696555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaaataaactttggtgaCttttgcccatattaggacct	6	7	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17696555	A	A	17696555	3	1	3	1	0	0	0	0	1	0	0	0	13095	565	20	3	363	3	RAD51AP2	2	17696555	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	5958762	17696555	225502818	114	1319											
NT5C1B	93034	broad.mit.edu	37	chr2	18770803	18770803	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagctccatttcctgtcacTtcccttgctcagtctagctt	5	16	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18770803	G	G	18770803	1	3	3	0	1	0	0	0	0	0	0	0	10781	1624	56	5		5	NT5C1B	2	18770803	5'UTR	SNP	T	TCGA-05-4250-01A-01D-1105-08	1074248	18770803	224428570	115	1320											
OTOF	9381	broad.mit.edu	37	chr2	26707430	26707430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggcaacgtcacacttcaCgtagcccttcagccccgagg	9	17	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26707430	A	A	26707430	3	1	3	1	0	0	0	0	1	0	0	0	11397	536	19	3	5345	3	OTOF	2	26707430	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	7936627	26707430	216491943	116	1321											
KHK	3795	broad.mit.edu	37	chr2	27317349	27317349	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactccgccctagcagttttGtcctggatgacctccgccgc	9	16	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27317349	C	C	27317349	3	2	3	1	0	0	0	0	1	0	0	0	8219	1377	48	4	224	4	KHK	2	27317349	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	609919	27317349	215882024	117	1322											
CAD	790	broad.mit.edu	37	chr2	27440873	27440873	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatgaaatggatgagttcGgtctctgcaaggtagccaca	12	8	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27440873	C	C	27440873	3	2	3	1	0	0	0	0	1	0	0	0	2591	1116	39	4	217	4	CAD	2	27440873	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	123524	27440873	215758500	118	1323											
ZNF512	84450	broad.mit.edu	37	chr2	27822533	27822533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaatttcctcagaagaagCataagctttatggtaaggca	10	6	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27822533	A	A	27822533	3	1	3	1	0	0	0	0	1	0	0	0	18083	710	25	3	375	3	ZNF512	2	27822533	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	381660	27822533	215376840	119	1324											
NLRC4	58484	broad.mit.edu	37	chr2	32460361	32460361	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attagacatatttatattttAaaaaaaagaggaagcaaaat	5	2	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32460361	T	T	32460361	1	4	3	0	1	0	0	0	0	0	0	0	10564	377	13	5		5	NLRC4	2	32460361	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	4637828	32460361	210739012	120	1325											
ATL2	64225	broad.mit.edu	37	chr2	38542443	38542443	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacttgcaaatgttgaagatCatcttcttgaatattctgag	7	6	4	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38542443	T	T	38542443	3	4	3	1	0	0	0	0	1	0	0	0	1111	826	29	4	1262	4	ATL2	2	38542443	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	6082082	38542443	204656930	121	1326											
KIAA1841	84542	broad.mit.edu	37	chr2	61315481	61315481	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggatgttttttgtatcttCtttgtttatagatgctgttt	8	4	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61315481	T	T	61315481	1	4	3	0	1	0	0	0	0	0	0	0	8331	928	32	4		4	KIAA1841	2	61315481	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	22773038	61315481	181883892	122	1327											
USP34	9736	broad.mit.edu	37	chr2	61459536	61459536	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaattgagaataattaaatTgaaagtaacttcttttccaa	4	5	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61459536	C	C	61459536	1	2	3	0	1	0	0	0	0	0	0	0	17192	1827	63	5		5	USP34	2	61459536	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	144055	61459536	181739837	123	1328											
PELI1	57162	broad.mit.edu	37	chr2	64335187	64335187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttatgtcatatttgagtgCttttaaaagatggcatgaat	9	4	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64335187	A	A	64335187	1	1	3	0	1	0	0	0	0	0	0	0	11815	812	28	3		3	PELI1	2	64335187	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2875651	64335187	178864186	124	1329											
SFXN5	94097	broad.mit.edu	37	chr2	73267911	73267911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagtggttctggctgcaGcgaagggtttgtgaatttct	14	5	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73267911	T	T	73267911	1	4	3	0	1	0	0	0	0	0	0	0	14311	986	34	3		3	SFXN5	2	73267911	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	8932724	73267911	169931462	125	1330											
REG1A	5967	broad.mit.edu	37	chr2	79348663	79348663	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccttaccctgagagcctCctttaattgtctcttctttt	4	12	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79348663	A	A	79348663	1	1	3	0	1	0	0	0	0	0	0	0	13318	870	30	3		3	REG1A	2	79348663	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	6080752	79348663	163850710	126	1331											
CTNNA2	1496	broad.mit.edu	37	chr2	80782968	80782968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggagaactatgaagctgGggtttatactgagaaggtgt	15	3	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80782968	T	T	80782968	3	4	3	1	0	0	0	0	1	0	0	0	4047	1232	43	2	1525	2	CTNNA2	2	80782968	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1434305	80782968	162416405	127	1332											
DNAH6	1768	broad.mit.edu	37	chr2	85004618	85004618	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctgccaaatctgccacaGagggtccaatgtcccagcct	8	14	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85004618	C	C	85004618	1	2	3	0	1	0	0	0	0	0	0	0	4645	957	33	4		4	DNAH6	2	85004618	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	4221650	85004618	158194755	128	1333											
POLR1A	25885	broad.mit.edu	37	chr2	86272899	86272899	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcaggcacgagatctggagGacaggaaatccacaggaaac	13	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86272899	T	T	86272899	1	4	3	0	1	0	0	0	0	0	0	0	12304	1189	41	3		3	POLR1A	2	86272899	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1268281	86272899	156926474	129	1334											
CD8B	926	broad.mit.edu	37	chr2	87073827	87073827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcacaggtggatggccactCccagggaaaccagcagaacc	12	13	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87073827	A	A	87073827	3	1	3	1	0	0	0	0	1	0	0	0	3075	855	30	3	355	3	CD8B	2	87073827	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	800928	87073827	156125546	130	1335											
SMYD1	150572	broad.mit.edu	37	chr2	88387418	88387418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcgggtggagagagaaGgcaccgggctcacggagggc	21	8	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88387418	T	T	88387418	3	4	3	1	0	0	0	0	1	0	0	0	14935	1000	35	2	362	2	SMYD1	2	88387418	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1313591	88387418	154811955	131	1336											
MFSD9	84804	broad.mit.edu	37	chr2	103353306	103353306	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcggacgcagcagcagccGcggacctaccccgggagccc	15	17	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103353306	A	A	103353306	1	1	3	0	1	0	0	0	0	0	0	0	9632	1102	38	4		4	MFSD9	2	103353306	5'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	14965888	103353306	139846067	132	1337											
POLR1B	84172	broad.mit.edu	37	chr2	113310460	113310460	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatggcgtgactttgtccagCagcactgttttctgcatgtt	10	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113310460	T	T	113310460	1	4	3	0	1	0	0	0	0	0	0	0	12305	725	25	4		4	POLR1B	2	113310460	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	9957154	113310460	129888913	133	1338											
MYO7B	4648	broad.mit.edu	37	chr2	128390968	128390968	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctctggtctgcacggcaaGtctcaggcctccagaggcca	12	14	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128390968	C	C	128390968	1	2	3	0	1	0	0	0	0	0	0	0	10177	1044	36	4		4	MYO7B	2	128390968	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	15080508	128390968	114808405	134	1339											
COBLL1	22837	broad.mit.edu	37	chr2	165556062	165556062	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atactattgaaacacacacaTacacacacacacagacacac	2	14	0	2	rs139984226	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165556062	C	C	165556062	1	2	3	0	1	0	0	0	0	0	0	0	3686	1421	49	5		5	COBLL1	2	165556062	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	37165094	165556062	77643311	135	1340											
RAPGEF4	11069	broad.mit.edu	37	chr2	173678841	173678841	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatagaaatgttctgtcttGatctggttggtaattactcc	8	7	4	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173678841	T	T	173678841	1	4	3	0	1	0	0	0	0	0	0	0	13154	1305	45	3		3	RAPGEF4	2	173678841	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	8122779	173678841	69520532	136	1341											
OSBPL6	114880	broad.mit.edu	37	chr2	179253667	179253667	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttggccaaagaatattctCattagcagaaacagttatat	6	7	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179253667	T	T	179253667	1	4	3	0	1	0	0	0	0	0	0	0	11375	841	29	4		4	OSBPL6	2	179253667	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	5574826	179253667	63945706	137	1342											
PRKRA	8575	broad.mit.edu	37	chr2	179306402	179306402	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatttctcagcagcattccTtttggcttgcttttttgatg	7	8	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179306402	A	A	179306402	3	1	3	1	0	0	0	0	1	0	0	0	12630	1608	56	5	409	5	PRKRA	2	179306402	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	52735	179306402	63892971	138	1343											
TTN	7273	broad.mit.edu	37	chr2	179516782	179516783	+	Intron	INS	-	T	T													tttacaacactaaggaaagaINStttttttaaaaaacactaat							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179516783	T	T	179516782	6	5	3	0	1	1	1	0	0	0	0	0	16861	348	12	0		0	TTN	2	179516782	Intron	INS	-	TCGA-05-4250-01A-01D-1105-08	210380	179516782	63682591	139	1344											
ITGA4	3676	broad.mit.edu	37	chr2	182363664	182363664	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttaaggtatgagacaatctCaacccaagtaattcagagtc	8	8	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182363664	A	A	182363664	1	1	3	0	1	0	0	0	0	0	0	0	7948	841	29	3		3	ITGA4	2	182363664	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2846882	182363664	60835709	140	1345											
PPIL3	53938	broad.mit.edu	37	chr2	201746307	201746307	+	Intron	DEL	C	-	-													aatactttatagtttgactgCttaaatatagataaaatttg							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201746307	-	-	201746307	6	5	3	0	1	1	0	1	0	0	0	0	12429	812	28	0		0	PPIL3	2	201746307	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	19382643	201746307	41453066	141	1346											
ALS2CR8	79800	broad.mit.edu	37	chr2	203790001	203790002	+	Intron	DNP	GG	TT	TT													gtagagctggaatctcacctGgaagagctgactgacaagat							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	203790002	TT	TT	203790001	1	4	3	0	1	0	0	0	0	0	0	0	555	1363	47	2		2	ALS2CR8	2	203790001	Intron	DNP	GG	TCGA-05-4250-01A-01D-1105-08	2043694	203790001	39409372	142	1347											
CPS1	1373	broad.mit.edu	37	chr2	211437942	211437942	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcctttatttaatatgTctgtgtattttacctttgga	7	6	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211437942	A	A	211437942	1	1	3	0	1	0	0	0	0	0	0	0	3855	1682	58	5		5	CPS1	2	211437942	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	7647941	211437942	31761431	143	1348											
ABCB6	10058	broad.mit.edu	37	chr2	220077768	220077768	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcatcacagtgaaagacaCgtcctgcagagtctcccgcc	10	14	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220077768	G	G	220077768	3	3	3	1	0	0	0	0	1	0	0	0	45	536	19	4	731	4	ABCB6	2	220077768	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	8639826	220077768	23121605	144	1349											
PSMD1	5707	broad.mit.edu	37	chr2	231951952	231951952	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttttttggaaatgtagtAgtcactaccgaaactaccaa	6	7	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231951952	G	G	231951952	1	3	3	0	1	0	0	0	0	0	0	0	12798	435	15	5		5	PSMD1	2	231951952	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	11874184	231951952	11247421	145	1350											
INPP5D	3635	broad.mit.edu	37	chr2	234103862	234103863	+	Intron	INS	-	A	A													tcctctctgtggatccactgINScaggcataactaatcaatca					rs151215689	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234103863	A	A	234103862	6	5	3	0	1	1	1	0	0	0	0	0	7826	1334	46	0		0	INPP5D	2	234103862	Intron	INS	-	TCGA-05-4250-01A-01D-1105-08	2151910	234103862	9095511	146	1351											
DNAJB3	414061	broad.mit.edu	37	chr2	234652186	234652186	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttccccagcagttcctctGacccccccaaaatattctcc	4	19	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234652186	A	A	234652186	3	1	3	1	0	0	0	0	1	0	0	0	4661	1294	45	4	64	4	DNAJB3	2	234652186	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	548324	234652186	8547187	147	1352											
SPP2	6694	broad.mit.edu	37	chr2	234959606	234959606	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgtgccccatgtgcttgCgtgtccaggtttcccagtgt	11	13	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234959606	T	T	234959606	1	4	3	0	1	0	0	0	0	0	0	0	15205	783	27	4		4	SPP2	2	234959606	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	307420	234959606	8239767	148	1353											
KLHL30	377007	broad.mit.edu	37	chr2	239056488	239056488	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacaggcaccaccctggaCgtggtggaggtggagagcta	15	12	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239056488	T	T	239056488	2	4	3	1	0	0	0	0	0	0	0	1	8455	535	19	4		4	KLHL30	2	239056488	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	4096882	239056488	4142885	149	1354											
KIF1A	547	broad.mit.edu	37	chr2	241661247	241661247	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctcgctggcactgacgcAgacgtggctgtgtgtgtact	14	11	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241661247	T	T	241661247	3	4	3	1	0	0	0	0	1	0	0	0	8353	188	7	5	679	5	KIF1A	2	241661247	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	2604759	241661247	1538126	150	1355											
SUMF1	285362	broad.mit.edu	37	chr3	4452510	4452510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcccagaggacagatgCcaccattccaagacacatgc	9	14	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4452510	A	A	4452510	1	1	3	0	1	0	0	0	0	0	0	0	15503	754	26	3		3	SUMF1	3	4452510	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08		4452510	193569920	151	1356											
SEC13	6396	broad.mit.edu	37	chr3	10347472	10347472	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctccgcttctcaggaCtggagtgtgtgtgaaggctg	13	12	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10347472	T	T	10347472	1	4	3	0	1	0	0	0	0	0	0	0	14093	580	20	4		4	SEC13	3	10347472	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	5894962	10347472	187674958	152	1357											
ATP2B2	491	broad.mit.edu	37	chr3	10419887	10419887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggggcagggctctgcctGgggtccccctgtgagccctg	16	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10419887	T	T	10419887	1	4	3	0	1	0	0	0	0	0	0	0	1144	1363	47	2		2	ATP2B2	3	10419887	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	72415	10419887	187602543	153	1358											
SLC6A11	6538	broad.mit.edu	37	chr3	10975883	10975883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaggagccacctccagcCatctacccacccatctaccc	4	22	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10975883	A	A	10975883	1	1	3	0	1	0	0	0	0	0	0	0	14788	609	21	2		2	SLC6A11	3	10975883	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	555996	10975883	187046547	154	1359											
CAPN7	23473	broad.mit.edu	37	chr3	15260164	15260164	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatcttttaactgtcatcTgaaacaaatctactttctac	2	11	5	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15260164	C	C	15260164	1	2	3	0	1	0	0	0	0	0	0	0	2657	1595	55	5		5	CAPN7	3	15260164	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	4284281	15260164	182762266	155	1360											
STAC	6769	broad.mit.edu	37	chr3	36546004	36546004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtccttagatagacctgCaggtcaccatccaagtgggt	12	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36546004	A	A	36546004	1	1	3	0	1	0	0	0	0	0	0	0	15357	725	25	3		3	STAC	3	36546004	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	21285840	36546004	161476426	156	1361											
HHATL	57467	broad.mit.edu	37	chr3	42738903	42738903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaggtgctgtgccctgCgtgcctcagctcccctgact	10	18	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42738903	A	A	42738903	1	1	3	0	1	0	0	0	0	0	0	0	7157	783	27	3		3	HHATL	3	42738903	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	6192899	42738903	155283527	157	1362											
CCBP2	1238	broad.mit.edu	37	chr3	42931198	42931198	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtccttaaagaagacactgAagaacttcacctaagagatt	7	8	1	5			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42931198	T	T	42931198	1	4	3	0	1	0	0	0	0	0	0	0	2760	261	9	5		5	CCBP2	3	42931198	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	192295	42931198	155091232	158	1363											
ZNF502	91392	broad.mit.edu	37	chr3	44752308	44752308	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taacattttcactacagcttCctccttcatgaccgaagaga	5	12	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44752308	A	A	44752308	1	1	3	0	1	0	0	0	0	0	0	0	18077	870	30	3		3	ZNF502	3	44752308	5'Flank	SNP	C	TCGA-05-4250-01A-01D-1105-08	1821110	44752308	153270122	159	1364											
KIF15	56992	broad.mit.edu	37	chr3	44839184	44839184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgggtaaagtagatccttGggttcctgggctccttttgg	13	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44839184	T	T	44839184	1	4	3	0	1	0	0	0	0	0	0	0	8347	1363	47	2		2	KIF15	3	44839184	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	86876	44839184	153183246	160	1365											
CCR9	10803	broad.mit.edu	37	chr3	45943393	45943393	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcactctccctctgaggGgtcttctctgaggtgcatgg	14	11	4	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45943393	A	A	45943393	1	1	3	0	1	0	0	0	0	0	0	0	2978	1247	43	4		4	CCR9	3	45943393	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	1104209	45943393	152079037	161	1366											
FYCO1	79443	broad.mit.edu	37	chr3	46008032	46008032	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctttggcgtcctggagctCctggacagcacaggccagtg	13	13	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46008032	G	G	46008032	3	3	3	1	0	0	0	0	1	0	0	0	6185	864	30	4	1686	4	FYCO1	3	46008032	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	64639	46008032	152014398	162	1367											
MYL3	4634	broad.mit.edu	37	chr3	46904660	46904660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtcagctcagtgctcaCctccagagcctgacctgcct	9	17	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46904660	A	A	46904660	1	1	3	0	1	0	0	0	0	0	0	0	10142	522	18	3		3	MYL3	3	46904660	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	896628	46904660	151117770	163	1368											
NBEAL2	23218	broad.mit.edu	37	chr3	47045903	47045903	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagagccctgggtgtgaGggatgtgaagtcgggaccct	19	7	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47045903	A	A	47045903	1	1	3	0	1	0	0	0	0	0	0	0	10283	1015	35	4		4	NBEAL2	3	47045903	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	141243	47045903	150976527	164	1369											
SMARCC1	6599	broad.mit.edu	37	chr3	47719886	47719887	+	Intron	DNP	CC	AA	AA													aactcaaaaatcttcagattCcttaaaaatacaacaacaaa							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47719887	AA	AA	47719886	1	1	3	0	1	0	0	0	0	0	0	0	14889	870	30	3		3	SMARCC1	3	47719886	Intron	DNP	CC	TCGA-05-4250-01A-01D-1105-08	673983	47719886	150302544	165	1370											
CDC25A	993	broad.mit.edu	37	chr3	48215895	48215895	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggtctcttcaacactgacCgagtgctggagctacacagg	11	12	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48215895	G	G	48215895	3	3	3	1	0	0	0	0	1	0	0	0	3092	652	23	4	793	4	CDC25A	3	48215895	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	496009	48215895	149806535	166	1371											
COL7A1	1294	broad.mit.edu	37	chr3	48629266	48629266	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctccaagcctgcaagataAcagggtcagaccagcagagg	13	11	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48629266	T	T	48629266	1	4	3	0	1	0	0	0	0	0	0	0	3736	58	2	5		5	COL7A1	3	48629266	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	413371	48629266	149393164	167	1372											
CELSR3	1951	broad.mit.edu	37	chr3	48699962	48699962	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccctggtgcccaccgcCccccagctcctcctggctga	9	22	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48699962	T	T	48699962	3	4	3	1	0	0	0	0	1	0	0	0	3253	623	22	4	9972	4	CELSR3	3	48699962	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	70696	48699962	149322468	168	1373											
LAMB2	3913	broad.mit.edu	37	chr3	49160160	49160160	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaagtccttcacactcTggataagttcttgaagttcc	9	9	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49160160	G	G	49160160	3	3	3	1	0	0	0	0	1	0	0	0	8683	1580	55	5	870	5	LAMB2	3	49160160	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	460198	49160160	148862270	169	1374											
LAMB2	3913	broad.mit.edu	37	chr3	49161963	49161963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattggggaggcatgggcaCtgcccactgcttggatcaca	13	11	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49161963	A	A	49161963	3	1	3	1	0	0	0	0	1	0	0	0	8683	564	20	3	2248	3	LAMB2	3	49161963	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1803	49161963	148860467	170	1375											
ITIH3	3699	broad.mit.edu	37	chr3	52833113	52833113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcaacgtgcaggtaccCgggctggctgattcatcatc	12	13	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52833113	A	A	52833113	1	1	3	0	1	0	0	0	0	0	0	0	7975	667	23	1		1	ITIH3	3	52833113	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	3671150	52833113	145189317	171	1376											
C3orf63	23272	broad.mit.edu	37	chr3	56680580	56680580	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcaattttcagataaatTactggttttggcgagctttc	9	6	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56680580	C	C	56680580	3	2	3	1	0	0	0	0	1	0	0	0	2261	1754	61	5	2931	5	C3orf63	3	56680580	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	3847467	56680580	141341850	172	1377											
FLNB	2317	broad.mit.edu	37	chr3	58120280	58120280	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttatgtgtaagaaaagtCagatgcagctgggttgacat	11	6	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58120280	G	G	58120280	1	3	3	0	1	0	0	0	0	0	0	0	5992	841	29	4		4	FLNB	3	58120280	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1439700	58120280	139902150	173	1378											
CNTN3	5067	broad.mit.edu	37	chr3	74570185	74570185	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatacttctaacctcaacttAgaaaatataggatttttttt	3	6	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74570185	C	C	74570185	1	2	3	0	1	0	0	0	0	0	0	0	3674	435	15	5		5	CNTN3	3	74570185	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	16449905	74570185	123452245	174	1379											
CADM2	253559	broad.mit.edu	37	chr3	86114787	86114787	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggctggccagaatggccctGaccatgctctcataggagga	13	11	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86114787	C	C	86114787	3	2	3	1	0	0	0	0	1	0	0	0	2593	1290	45	4	1201	4	CADM2	3	86114787	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	11544602	86114787	111907643	175	1380											
GPR15	2838	broad.mit.edu	37	chr3	98251438	98251438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatactgtgcagagaaaaaGgcaactccaattaaactcat	6	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98251438	T	T	98251438	3	4	3	1	0	0	0	0	1	0	0	0	6720	991	35	2	563	2	GPR15	3	98251438	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	12136651	98251438	99770992	176	1381											
MORC1	27136	broad.mit.edu	37	chr3	108822893	108822893	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagagttatggcacaaagaTggagcctagagtggagtctt	13	6	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108822893	C	C	108822893	1	2	3	0	1	0	0	0	0	0	0	0	9795	1479	51	5		5	MORC1	3	108822893	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	10571455	108822893	89199537	177	1382											
DPPA4	55211	broad.mit.edu	37	chr3	109050530	109050530	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttactcacttttgaggctAcaataggtaattaggataag	8	6	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109050530	T	T	109050530	1	4	3	0	1	0	0	0	0	0	0	0	4776	406	14	5		5	DPPA4	3	109050530	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	227637	109050530	88971900	178	1383											
PVRL3	25945	broad.mit.edu	37	chr3	110852594	110852594	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttcccattgtcaactttGgcaacaattaaggatgacac	6	12	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110852594	A	A	110852594	2	1	3	1	0	0	0	0	0	0	0	1	12949	1339	47	4		4	PVRL3	3	110852594	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1802064	110852594	87169836	179	1384											
PHLDB2	90102	broad.mit.edu	37	chr3	111637861	111637861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatggtttacaagtcaaGttgggaaattctagaactga	12	4	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111637861	T	T	111637861	1	4	3	0	1	0	0	0	0	0	0	0	11947	1044	36	3		3	PHLDB2	3	111637861	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	785267	111637861	86384569	180	1385											
SLC35A5	55032	broad.mit.edu	37	chr3	112299982	112299982	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgatggcccaggttaccActgtcattatcacaacagtg	8	11	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112299982	G	G	112299982	3	3	3	1	0	0	0	0	1	0	0	0	14688	159	6	5	1036	5	SLC35A5	3	112299982	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	662121	112299982	85722448	181	1386											
SIDT1	54847	broad.mit.edu	37	chr3	113326905	113326905	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctgggtccctttgatggtCttgactctctcatggtctct	9	12	5	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113326905	A	A	113326905	1	1	3	0	1	0	0	0	0	0	0	0	14415	928	32	3		3	SIDT1	3	113326905	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1026923	113326905	84695525	182	1387											
GRAMD1C	54762	broad.mit.edu	37	chr3	113638907	113638907	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttagtgtttgttgatgagGaagactgaaggtacttcaaa	11	3	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113638907	T	T	113638907	1	4	3	0	1	0	0	0	0	0	0	0	6815	1189	41	3		3	GRAMD1C	3	113638907	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	312002	113638907	84383523	183	1388											
C3orf30	152405	broad.mit.edu	37	chr3	118865982	118865982	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtgtacggccaagccactGaactagctgaacaccaggct	10	12	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118865982	A	A	118865982	3	1	3	1	0	0	0	0	1	0	0	0	2242	1291	45	4	948	4	C3orf30	3	118865982	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	5227075	118865982	79156448	184	1389											
CASR	846	broad.mit.edu	37	chr3	122002503	122002503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttagtctgtgccacacaAtaactcactcttcactggga	6	11	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122002503	G	G	122002503	1	3	3	0	1	0	0	0	0	0	0	0	2708	116	4	5		5	CASR	3	122002503	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	3136521	122002503	76019927	185	1390											
SEMA5B	54437	broad.mit.edu	37	chr3	122632547	122632547	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctggggtcgggggagaggCgtcaatccagggagggggac	21	8	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122632547	T	T	122632547	1	4	3	0	1	0	0	0	0	0	0	0	14151	783	27	4		4	SEMA5B	3	122632547	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	630044	122632547	75389883	186	1391											
ITGB5	3693	broad.mit.edu	37	chr3	124485040	124485040	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcagaactgagggctggcTgagtgggccgagcccttgca	15	10	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124485040	A	A	124485040	1	1	3	0	1	0	0	0	0	0	0	0	7968	1595	55	5		5	ITGB5	3	124485040	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	1852493	124485040	73537390	187	1392											
SNX4	8723	broad.mit.edu	37	chr3	125176076	125176076	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaacattccgtgttgctaCagtatcatcagaggccaaaa	9	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125176076	G	G	125176076	1	3	3	0	1	0	0	0	0	0	0	0	15018	493	17	4		4	SNX4	3	125176076	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	691036	125176076	72846354	188	1393											
ROPN1B	152015	broad.mit.edu	37	chr3	125694456	125694456	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctccggtgagagagcggtCtgagcgagtcgctttgtgta	16	9	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125694456	A	A	125694456	3	1	3	1	0	0	0	0	1	0	0	0	13635	913	32	3	173	3	ROPN1B	3	125694456	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	518380	125694456	72327974	189	1394											
KLF15	28999	broad.mit.edu	37	chr3	126070627	126070627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccctgctgcacacccaaGtaagcagacatgagtggctg	12	12	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126070627	T	T	126070627	1	4	3	0	1	0	0	0	0	0	0	0	8414	1044	36	3		3	KLF15	3	126070627	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	376171	126070627	71951803	190	1395											
PLXNA1	5361	broad.mit.edu	37	chr3	126751397	126751397	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactcaccctccaacaagcTgctctacgccaaggacatcc	7	17	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126751397	A	A	126751397	3	1	3	1	0	0	0	0	1	0	0	0	12214	1580	55	5	5513	5	PLXNA1	3	126751397	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	680770	126751397	71271033	191	1396											
GATA2	2624	broad.mit.edu	37	chr3	128200779	128200779	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacaggtgccggctcttctGgcggccgactgggagggcaa	16	12	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128200779	A	A	128200779	2	1	3	1	0	0	0	0	0	0	0	1	6316	1335	47	4		4	GATA2	3	128200779	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1449382	128200779	69821651	192	1397											
NMNAT3	349565	broad.mit.edu	37	chr3	139280150	139280150	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacttctccactatttccTggatgtgcgcatccttccag	6	14	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139280150	C	C	139280150	3	2	3	1	0	0	0	0	1	0	0	0	10595	1580	55	5	301	5	NMNAT3	3	139280150	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	11079371	139280150	58742280	193	1398											
ZIC1	7545	broad.mit.edu	37	chr3	147128524	147128524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacatggccgcgcatcacGgcgccggcgccttcttccgc	12	17	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147128524	T	T	147128524	3	4	3	1	0	0	0	0	1	0	0	0	17804	1116	39	1	627	1	ZIC1	3	147128524	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	7848374	147128524	50893906	194	1399											
COMMD2	51122	broad.mit.edu	37	chr3	149459216	149459216	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatactatgtatttatcatCatgaattaataaaaaattaa	3	3	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149459216	A	A	149459216	1	1	3	0	1	0	0	0	0	0	0	0	3748	841	29	3		3	COMMD2	3	149459216	3'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	2330692	149459216	48563214	195	1400											
GPR149	344758	broad.mit.edu	37	chr3	154145355	154145355	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgttctgcctgcagttgatgAtgcagccacagggcaagtgg	14	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154145355	G	G	154145355	3	3	3	1	0	0	0	0	1	0	0	0	6719	333	12	5	1083	5	GPR149	3	154145355	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	4686139	154145355	43877075	196	1401											
KCNAB1	7881	broad.mit.edu	37	chr3	156009595	156009595	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccccaggaagggggagcaagGagggcttaaaagaaaagcag	16	7	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156009595	C	C	156009595	1	2	3	0	1	0	0	0	0	0	0	0	8079	1189	41	4		4	KCNAB1	3	156009595	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1864240	156009595	42012835	197	1402											
GOLIM4	27333	broad.mit.edu	37	chr3	167761353	167761353	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgagtagaaatatacattCtctgaattatatgagagtct	7	5	2	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167761353	G	G	167761353	1	3	3	0	1	0	0	0	0	0	0	0	6630	928	32	4		4	GOLIM4	3	167761353	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	11751758	167761353	30261077	198	1403											
PHC3	80012	broad.mit.edu	37	chr3	169899543	169899543	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgggctgcgcatgcgccCcccggcggcgggcggagagg	19	14	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169899543	A	A	169899543	1	1	3	0	1	0	0	0	0	0	0	0	11913	638	22	2		2	PHC3	3	169899543	5'Flank	SNP	C	TCGA-05-4250-01A-01D-1105-08	2138190	169899543	28122887	199	1404											
PSMD2	5708	broad.mit.edu	37	chr3	184022010	184022010	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttgttgaaatggtgaaTgaatgaccgattctcctttt	9	5	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184022010	C	C	184022010	1	2	3	0	1	0	0	0	0	0	0	0	12804	1479	51	5		5	PSMD2	3	184022010	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	14122467	184022010	14000420	200	1405											
CHRD	8646	broad.mit.edu	37	chr3	184104849	184104849	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctccacagagaaacaagaTgtcagagacttgccagggct	12	10	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184104849	C	C	184104849	2	2	3	1	0	0	0	0	0	0	0	1	3403	1461	51	5		5	CHRD	3	184104849	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	82839	184104849	13917581	201	1406											
IL1RAP	3556	broad.mit.edu	37	chr3	190327006	190327006	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacattttattctctctaaTggcttataaaatgataatgc	4	7	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190327006	C	C	190327006	1	2	3	0	1	0	0	0	0	0	0	0	7730	1479	51	5		5	IL1RAP	3	190327006	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	6222157	190327006	7695424	202	1407											
WDR53	348793	broad.mit.edu	37	chr3	196281560	196281560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccacagagatagaatggGctagggcagggtttaagagc	15	6	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196281560	T	T	196281560	3	4	3	1	0	0	0	0	1	0	0	0	17432	1203	42	3	481	3	WDR53	3	196281560	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	5954554	196281560	1740870	203	1408											
SENP5	205564	broad.mit.edu	37	chr3	196611993	196611993	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgaccttatttttagataGaaatataacttacttctctt	3	7	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196611993	C	C	196611993	1	2	3	0	1	0	0	0	0	0	0	0	14162	957	33	4		4	SENP5	3	196611993	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	330433	196611993	1410437	204	1409											
SENP5	205564	broad.mit.edu	37	chr3	196612172	196612172	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caccaacacttgtgcattctGaaagctaagctgggaaggcc	10	11	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196612172	T	T	196612172	2	4	3	1	0	0	0	0	0	0	0	1	14162	1277	45	3		3	SENP5	3	196612172	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	179	196612172	1410258	205	1410											
ZNF595	152687	broad.mit.edu	37	chr4	59391	59391	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaatgtctggaccctgcCcagcagaatttgtatagaga	11	8	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59391	A	A	59391	2	1	3	1	0	0	0	0	0	0	0	1	18152	610	22	2		2	ZNF595	4	59391	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08		59391	191094885	206	1411											
PIGG	54872	broad.mit.edu	37	chr4	527726	527726	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtacgcagggcctgtgctGtgggccagccacttagtgca	14	12	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	527726	T	T	527726	2	4	3	1	0	0	0	0	0	0	0	1	11983	1364	48	3		3	PIGG	4	527726	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	468335	527726	190626550	207	1412											
PIGG	54872	broad.mit.edu	37	chr4	532897	532897	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgttgttacatgtgtgatAtgtaagtggcatgtgctaat	12	3	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	532897	G	G	532897	1	3	3	0	1	0	0	0	0	0	0	0	11983	464	16	5		5	PIGG	4	532897	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	5171	532897	190621379	208	1413											
TACC3	10460	broad.mit.edu	37	chr4	1737014	1737014	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcagttctaggcacgggcGcggaggtggattacctggag	16	9	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1737014	A	A	1737014	3	1	3	1	0	0	0	0	1	0	0	0	15622	1087	38	4	1628	4	TACC3	4	1737014	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1204117	1737014	189417262	209	1414											
MFSD10	10227	broad.mit.edu	37	chr4	2934882	2934882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcagtcagaggtggccCcagtgagtggcgcacacaga	14	12	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2934882	A	A	2934882	3	1	3	1	0	0	0	0	1	0	0	0	9621	623	22	2	1084	2	MFSD10	4	2934882	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1197868	2934882	188219394	210	1415											
RGS12	6002	broad.mit.edu	37	chr4	3416626	3416626	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtggcgtgtgagagagacGcatgtgaggggtgtgtgaga	21	3	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3416626	A	A	3416626	1	1	3	0	1	0	0	0	0	0	0	0	13404	1102	38	4		4	RGS12	4	3416626	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	481744	3416626	187737650	211	1416											
STX18	53407	broad.mit.edu	37	chr4	4421841	4421841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccacacgcggaagccagCgttgtttttaatggcctggg	13	10	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4421841	A	A	4421841	3	1	3	1	0	0	0	0	1	0	0	0	15459	768	27	3	83	3	STX18	4	4421841	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1005215	4421841	186732435	212	1417											
JAKMIP1	152789	broad.mit.edu	37	chr4	6042384	6042384	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggtaagcctggtcaagGgcttgcttccggtagtcgag	14	10	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6042384	A	A	6042384	2	1	3	1	0	0	0	0	0	0	0	1	8010	1219	43	4		4	JAKMIP1	4	6042384	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1620543	6042384	185111892	213	1418											
WDR1	9948	broad.mit.edu	37	chr4	10084555	10084555	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaaggagcaagtgaggCgtcctccagaacagtaactg	13	8	0	3	rs139052665	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10084555	G	G	10084555	1	3	3	0	1	0	0	0	0	0	0	0	17399	783	27	4		4	WDR1	4	10084555	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4042171	10084555	181069721	214	1419											
ZCCHC4	29063	broad.mit.edu	37	chr4	25334902	25334902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggggcaacatagtgagCatcaggttctgggtaatgtg	15	6	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25334902	A	A	25334902	3	1	3	1	0	0	0	0	1	0	0	0	17716	710	25	3	441	3	ZCCHC4	4	25334902	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	15250347	25334902	165819374	215	1420											
TBC1D1	23216	broad.mit.edu	37	chr4	38104848	38104848	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaaaatctgaagagactgtCcaagttatgtattgacctgc	9	7	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38104848	T	T	38104848	1	4	3	0	1	0	0	0	0	0	0	0	15716	870	30	4		4	TBC1D1	4	38104848	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	12769946	38104848	153049428	216	1421											
WDR19	57728	broad.mit.edu	37	chr4	39274582	39274582	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgactataagaagagtaaaAtatgtcatttgtttcagatt	7	3	2	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39274582	G	G	39274582	1	3	3	0	1	0	0	0	0	0	0	0	17406	116	4	5		5	WDR19	4	39274582	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1169734	39274582	151879694	217	1422											
N4BP2	55728	broad.mit.edu	37	chr4	40127837	40127837	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaaattactgaagactTtaacagcatctgaaatgcta	6	7	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40127837	G	G	40127837	3	3	3	1	0	0	0	0	1	0	0	0	10204	1838	64	5	4452	5	N4BP2	4	40127837	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	853255	40127837	151026439	218	1423											
COMMD8	54951	broad.mit.edu	37	chr4	47453593	47453593	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcacaaggtttctgaacaCgcagtattcactctgccata	6	12	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47453593	T	T	47453593	1	4	3	0	1	0	0	0	0	0	0	0	3754	551	19	4		4	COMMD8	4	47453593	3'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	7325756	47453593	143700683	219	1424											
STAP1	26228	broad.mit.edu	37	chr4	68447243	68447243	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattgttaaaactaatttctAattataaaggagagttagtc	7	3	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68447243	T	T	68447243	1	4	3	0	1	0	0	0	0	0	0	0	15370	377	13	5		5	STAP1	4	68447243	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	20993650	68447243	122707033	220	1425											
UBA6	55236	broad.mit.edu	37	chr4	68527971	68527971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcttctgaatcttgttggCatctacaactcaaaacagaa	6	9	5	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68527971	A	A	68527971	3	1	3	1	0	0	0	0	1	0	0	0	16958	710	25	3	2202	3	UBA6	4	68527971	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	80728	68527971	122626305	221	1426											
C4orf40	401137	broad.mit.edu	37	chr4	71024063	71024063	+	Frame_Shift_Del	DEL	C	-	-													aggatgacaatgacgatggtCacccacttcatccatctctg							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71024063	-	-	71024063	7	5	3	1	0	1	0	1	0	0	0	0	2292	826	29	0	104	0	C4orf40	4	71024063	Frame_Shift_Del	DEL	C	TCGA-05-4250-01A-01D-1105-08	2496092	71024063	120130213	222	1427											
ANKRD17	26057	broad.mit.edu	37	chr4	74019917	74019917	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacattaagaaaatggaaacAgaagactacaaccataataa	5	6	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74019917	T	T	74019917	1	4	3	0	1	0	0	0	0	0	0	0	646	203	7	5		5	ANKRD17	4	74019917	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	2995854	74019917	117134359	223	1428											
AFM	173	broad.mit.edu	37	chr4	74349697	74349697	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatttatagaagataataTtgaatacatgtgagttgtgc	8	2	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74349697	C	C	74349697	3	2	3	1	0	0	0	0	1	0	0	0	361	1493	52	5	134	5	AFM	4	74349697	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	329780	74349697	116804579	224	1429											
ARHGAP24	83478	broad.mit.edu	37	chr4	86898879	86898879	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcttatacccttatcaaaaGaagaagtaattatctcttga	4	7	3	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86898879	T	T	86898879	1	4	3	0	1	0	0	0	0	0	0	0	875	957	33	3		3	ARHGAP24	4	86898879	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	12549182	86898879	104255397	225	1430											
SNCA	6622	broad.mit.edu	37	chr4	90743427	90743427	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctttttgacaaagccAgtggctgctgcaatgctccc	10	12	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90743427	T	T	90743427	2	4	3	1	0	0	0	0	0	0	0	1	14954	175	7	5		5	SNCA	4	90743427	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	3844548	90743427	100410849	226	1431											
DKK2	27123	broad.mit.edu	37	chr4	107956632	107956632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccccgcccagagaggaCttgatggagttgagtttggc	14	10	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107956632	A	A	107956632	3	1	3	1	0	0	0	0	1	0	0	0	4585	564	20	3	678	3	DKK2	4	107956632	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	17213205	107956632	83197644	227	1432											
COL25A1	84570	broad.mit.edu	37	chr4	109767253	109767253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatttatcttaataagaaCataatataaaaagtataaac	2	3	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109767253	A	A	109767253	1	1	3	0	1	0	0	0	0	0	0	0	3716	493	17	3		3	COL25A1	4	109767253	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1810621	109767253	81387023	228	1433											
CCDC109B	55013	broad.mit.edu	37	chr4	110595086	110595086	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctaaagaggcaccattcGtacccattggaatagcaggt	10	9	0	1	rs10488887	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110595086	A	A	110595086	1	1	3	0	1	0	0	0	0	0	0	0	2771	1160	40	4		4	CCDC109B	4	110595086	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	827833	110595086	80559190	229	1434											
EGF	1950	broad.mit.edu	37	chr4	110925518	110925518	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaacatctaaagttatgttCctagttatcttcatatttct	3	7	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110925518	T	T	110925518	1	4	3	0	1	0	0	0	0	0	0	0	5002	870	30	4		4	EGF	4	110925518	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	330432	110925518	80228758	230	1435											
SEC24D	9871	broad.mit.edu	37	chr4	119666152	119666152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctgtttttgagcttccCtggtgcttcagcagttggca	10	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119666152	A	A	119666152	3	1	3	1	0	0	0	0	1	0	0	0	14110	681	24	2	1367	2	SEC24D	4	119666152	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	8740634	119666152	71488124	231	1436											
MYOZ2	51778	broad.mit.edu	37	chr4	120107204	120107205	+	Frame_Shift_Ins	INS	-	A	A													tttgagctactattgctaacINSagatcccaggtttatgtcct							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120107205	A	A	120107204	7	5	3	1	0	1	1	0	0	0	0	0	10190	478	17	0	662	0	MYOZ2	4	120107204	Frame_Shift_Ins	INS	-	TCGA-05-4250-01A-01D-1105-08	441052	120107204	71047072	232	1437											
SMARCA5	8467	broad.mit.edu	37	chr4	144469215	144469215	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatttgacaaagaaaatgtTtatgatgaattgcgacagtg	11	3	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144469215	C	C	144469215	2	2	3	1	0	0	0	0	0	0	0	1	14885	1828	64	5		5	SMARCA5	4	144469215	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	24362011	144469215	46685061	233	1438											
C4orf51	646603	broad.mit.edu	37	chr4	146617753	146617753	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtcatcttctctgctgGgctggtacccaagagactac	10	13	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146617753	A	A	146617753	4	1	3	1	0	0	0	0	0	1	0	0	2300	1241	43	4	282	4	C4orf51	4	146617753	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2148538	146617753	44536523	234	1439											
DCHS2	54798	broad.mit.edu	37	chr4	155176940	155176940	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaacatattttaaaaacaAcgatgaaatgaaataccaac	3	7	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155176940	T	T	155176940	1	4	3	0	1	0	0	0	0	0	0	0	4321	58	2	5		5	DCHS2	4	155176940	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	8559187	155176940	35977336	235	1440											
RXFP1	59350	broad.mit.edu	37	chr4	159566391	159566391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaattatggaattttaCatttttctcctttttgcttg	7	5	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159566391	A	A	159566391	1	1	3	0	1	0	0	0	0	0	0	0	13870	493	17	3		3	RXFP1	4	159566391	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4389451	159566391	31587885	236	1441											
RXFP1	59350	broad.mit.edu	37	chr4	159567946	159567946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactatgactcctctaggtgCcgactgcttaatgggaatat	9	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159567946	A	A	159567946	3	1	3	1	0	0	0	0	1	0	0	0	13870	739	26	3	1411	3	RXFP1	4	159567946	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1555	159567946	31586330	237	1442											
DDX60L	91351	broad.mit.edu	37	chr4	169294999	169294999	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacgttaggttttaaaaatCagcccaaatgttaacccttt	5	9	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169294999	G	G	169294999	1	3	3	0	1	0	0	0	0	0	0	0	4412	841	29	4		4	DDX60L	4	169294999	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	9727053	169294999	21859277	238	1443											
PALLD	23022	broad.mit.edu	37	chr4	169433085	169433085	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccgaaaggctgaaaagcgtGgtgcaaaaactcccagcaca	10	11	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169433085	C	C	169433085	3	2	3	1	0	0	0	0	1	0	0	0	11501	1348	47	4	432	4	PALLD	4	169433085	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	138086	169433085	21721191	239	1444											
PALLD	23022	broad.mit.edu	37	chr4	169589482	169589482	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttggctacgaatcccagCggctcagacacaacatctgc	9	13	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169589482	G	G	169589482	3	3	3	1	0	0	0	0	1	0	0	0	11501	767	27	4	1056	4	PALLD	4	169589482	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	156397	169589482	21564794	240	1445											
VEGFC	7424	broad.mit.edu	37	chr4	177609075	177609075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggtcttgttcgctgcCtgacacctttggaagaaaca	12	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177609075	A	A	177609075	3	1	3	1	0	0	0	0	1	0	0	0	17279	680	24	2	563	2	VEGFC	4	177609075	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	8019593	177609075	13545201	241	1446											
ODZ3	55714	broad.mit.edu	37	chr4	183594202	183594202	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaataacaccatagattccGgagaacttgatattggccga	8	8	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183594202	T	T	183594202	4	4	3	1	0	0	0	0	0	1	0	0	10931	1117	39	1	1178	1	ODZ3	4	183594202	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	5985127	183594202	7560074	242	1447											
ACSL1	2180	broad.mit.edu	37	chr4	185705088	185705088	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catacaaactcacctgtttaTatgaaagccattcatagggt	6	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185705088	C	C	185705088	3	2	3	1	0	0	0	0	1	0	0	0	177	1406	49	5	1800	5	ACSL1	4	185705088	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	2110886	185705088	5449188	243	1448											
KIAA0947	23379	broad.mit.edu	37	chr5	5463461	5463461	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccatcagcggtatgcctcaGaatgaaaaccctcagagcag	9	13	3	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5463461	A	A	5463461	2	1	3	1	0	0	0	0	0	0	0	1	8272	933	33	4		4	KIAA0947	5	5463461	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08		5463461	175451799	244	1449											
ADCY2	108	broad.mit.edu	37	chr5	7804815	7804815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactcccaggtaagacgcGttggccacttaacggcacag	11	13	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7804815	T	T	7804815	1	4	3	0	1	0	0	0	0	0	0	0	294	1160	40	3		3	ADCY2	5	7804815	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2341354	7804815	173110445	245	1450											
DNAH5	1767	broad.mit.edu	37	chr5	13793973	13793973	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtaaaaacttaaaaaaaaTttttaaaaactcttctaaga	2	4	2	1	rs147234148	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13793973	A	A	13793973	1	1	3	0	1	0	0	0	0	0	0	0	4644	1508	52	5		5	DNAH5	5	13793973	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	5989158	13793973	167121287	246	1451											
TRIO	7204	broad.mit.edu	37	chr5	14498688	14498688	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaagatgacggcatctaCacgtgcatcgctgtcaatga	11	10	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14498688	A	A	14498688	4	1	3	1	0	0	0	0	0	1	0	0	16677	489	17	3	8481	3	TRIO	5	14498688	Nonsense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	704715	14498688	166416572	247	1452											
CDH12	1010	broad.mit.edu	37	chr5	21817018	21817018	+	Intron	SNP	T	A	A													tttatcttctttaattattaTttagtagtcaactgtcccaa							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21817018	A	A	21817018	1	1	3	0	1	0	0	0	0	0	0	0	3128	1508	52	5		5	CDH12	5	21817018	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	7318330	21817018	159098242	248	1453	1	2									
CDH12	1010	broad.mit.edu	37	chr5	21817022	21817022	+	Intron	SNP	G	T	T													tcttctttaattattatttaGtagtcaactgtcccaacatt							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21817022	T	T	21817022	1	4	3	0	1	0	0	0	0	0	0	0	3128	1044	36	3		3	CDH12	5	21817022	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	4	21817022	159098238	249	1454	1	2									
ADAMTS12	81792	broad.mit.edu	37	chr5	33546268	33546268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcctcctggacagaacaCtcctctctcctgaactccac	7	17	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33546268	A	A	33546268	3	1	3	1	0	0	0	0	1	0	0	0	257	565	20	3	454	3	ADAMTS12	5	33546268	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	11729246	33546268	147368992	250	1455											
IL7R	3575	broad.mit.edu	37	chr5	35876564	35876564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagcatatgtcaccatGtccagcttctaccaaaacca	6	12	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35876564	T	T	35876564	3	4	3	1	0	0	0	0	1	0	0	0	7775	1377	48	3	1386	3	IL7R	5	35876564	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2330296	35876564	145038696	251	1456											
NIPBL	25836	broad.mit.edu	37	chr5	36961594	36961594	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgcataggaatgatgAtgtctcagtataaactttct	8	5	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36961594	G	G	36961594	3	3	3	1	0	0	0	0	1	0	0	0	10523	333	12	5	381	5	NIPBL	5	36961594	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	1085030	36961594	143953666	252	1457											
HCN1	348980	broad.mit.edu	37	chr5	45267021	45267021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttcaccatgttggccaGgctggtctcgaactcctgac	12	12	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45267021	T	T	45267021	1	4	3	0	1	0	0	0	0	0	0	0	7062	1015	35	2		2	HCN1	5	45267021	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	8305427	45267021	135648239	253	1458											
ISL1	3670	broad.mit.edu	37	chr5	50689298	50689298	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatgaatactattccagtgtCctttatttatttctcaacct	3	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50689298	T	T	50689298	1	4	3	0	1	0	0	0	0	0	0	0	7926	870	30	4		4	ISL1	5	50689298	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	5422277	50689298	130225962	254	1459											
CDC20B	166979	broad.mit.edu	37	chr5	54429307	54429307	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatggaatcgtttatatcAccagaacttttaagatggaa	8	5	1	2	rs149160251		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54429307	G	G	54429307	2	3	3	1	0	0	0	0	0	0	0	1	3090	146	6	5		5	CDC20B	5	54429307	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	3740009	54429307	126485953	255	1460											
MAP3K1	4214	broad.mit.edu	37	chr5	56177585	56177585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcacttcaccaggatgcGtcgccgtttgatggctattg	10	12	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56177585	T	T	56177585	3	4	3	1	0	0	0	0	1	0	0	0	9335	1145	40	3	2612	3	MAP3K1	5	56177585	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1748278	56177585	124737675	256	1461											
BDP1	55814	broad.mit.edu	37	chr5	70759928	70759928	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaactgaaaagccatcgactCcagtccagacaagagagtaa	8	10	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70759928	G	G	70759928	3	3	3	1	0	0	0	0	1	0	0	0	1400	855	30	4	657	4	BDP1	5	70759928	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	14582343	70759928	110155332	257	1462											
MCCC2	64087	broad.mit.edu	37	chr5	70931014	70931014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagagcctttatttcctGctgatgaattgtatggaata	9	6	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70931014	T	T	70931014	3	4	3	1	0	0	0	0	1	0	0	0	9468	1319	46	3	978	3	MCCC2	5	70931014	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	171086	70931014	109984246	258	1463											
COL4A3BP	10087	broad.mit.edu	37	chr5	74670321	74670321	+	Intron	DEL	A	-	-													gaaggaacaatggttgtgccAaaaagggccacagccacgtg							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74670321	-	-	74670321	6	5	3	0	1	1	0	1	0	0	0	0	3724	145	5	0		0	COL4A3BP	5	74670321	Intron	DEL	A	TCGA-05-4250-01A-01D-1105-08	3739307	74670321	106244939	259	1464											
PDE8B	8622	broad.mit.edu	37	chr5	76713967	76713967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaaaatctcaaatcccCtgacccgaccctccgcacag	5	17	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76713967	A	A	76713967	1	1	3	0	1	0	0	0	0	0	0	0	11748	696	24	2		2	PDE8B	5	76713967	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2043646	76713967	104201293	260	1465											
DHFR	1719	broad.mit.edu	37	chr5	79950397	79950397	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtggccgccccgcccccctCgtccccatttgtgcaggcga	11	19	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79950397	G	G	79950397	1	3	3	0	1	0	0	0	0	0	0	0	4521	899	31	4		4	DHFR	5	79950397	5'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	3236430	79950397	100964863	261	1466											
RASGRF2	5924	broad.mit.edu	37	chr5	80521430	80521430	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgttgaattgtgttagatTccgtcagaaaatgtacgcac	9	6	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80521430	A	A	80521430	1	1	3	0	1	0	0	0	0	0	0	0	13181	1798	62	5		5	RASGRF2	5	80521430	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	571033	80521430	100393830	262	1467											
C5orf36	285600	broad.mit.edu	37	chr5	93856111	93856111	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctttaatgaatttcaccAttgaagatggagctaaaatt	6	5	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93856111	G	G	93856111	3	3	3	1	0	0	0	0	1	0	0	0	2318	217	8	5	3088	5	C5orf36	5	93856111	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	13334681	93856111	87059149	263	1468											
ARSK	153642	broad.mit.edu	37	chr5	94903741	94903741	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggactatacttcaggacAtcactccattaggtaaaaat	6	9	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94903741	T	T	94903741	3	4	3	1	0	0	0	0	1	0	0	0	1000	217	8	5	414	5	ARSK	5	94903741	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	1047630	94903741	86011519	264	1469											
PPIP5K2	23262	broad.mit.edu	37	chr5	102537262	102537262	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcagttgttcctaatacctCatctcggaaaaagaatataa	6	8	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102537262	T	T	102537262	3	4	3	1	0	0	0	0	1	0	0	0	12434	838	29	4	3710	4	PPIP5K2	5	102537262	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	7633521	102537262	78377998	265	1470											
YTHDC2	64848	broad.mit.edu	37	chr5	112878169	112878169	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgatgcctttgctcaggtCtttcatctcattttaactga	6	9	4	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112878169	G	G	112878169	2	3	3	1	0	0	0	0	0	0	0	1	17624	900	32	4		4	YTHDC2	5	112878169	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	10340907	112878169	68037091	266	1471											
FBN2	2201	broad.mit.edu	37	chr5	127627259	127627259	+	Frame_Shift_Del	DEL	G	-	-													tatcagatagtacaaagccaGgggggcagaggcactggaag							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127627259	-	-	127627259	7	5	3	1	0	1	0	1	0	0	0	0	5760	1000	35	0	2552	0	FBN2	5	127627259	Frame_Shift_Del	DEL	G	TCGA-05-4250-01A-01D-1105-08	14749090	127627259	53288001	267	1472											
FBN2	2201	broad.mit.edu	37	chr5	127728739	127728739	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcaagtgtgttcatacaAcccttttgaaaaattaaaat	6	6	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127728739	T	T	127728739	1	4	3	0	1	0	0	0	0	0	0	0	5760	58	2	5		5	FBN2	5	127728739	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	101480	127728739	53186521	268	1473											
FBN2	2201	broad.mit.edu	37	chr5	127800414	127800414	+	Intron	DEL	C	-	-													gcacaggcagacagctgactCaccttggcaagctccagtgc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127800414	-	-	127800414	6	5	3	0	1	1	0	1	0	0	0	0	5760	841	29	0		0	FBN2	5	127800414	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	71675	127800414	53114846	269	1474											
P4HA2	8974	broad.mit.edu	37	chr5	131545977	131545977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccctagaatctccttacCaagggagagcaggcggcggg	13	12	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131545977	A	A	131545977	3	1	3	1	0	0	0	0	1	0	0	0	11451	608	21	2	1002	2	P4HA2	5	131545977	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	3745563	131545977	49369283	270	1475											
CAMLG	819	broad.mit.edu	37	chr5	134074270	134074270	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcgcagcggcggccaacAtcaccgccactgccacccct	8	22	1	0	rs111282208		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134074270	G	G	134074270	1	3	3	0	1	0	0	0	0	0	0	0	2635	232	8	5		5	CAMLG	5	134074270	5'UTR	SNP	A	TCGA-05-4250-01A-01D-1105-08	2528293	134074270	46840990	271	1476											
TXNDC15	79770	broad.mit.edu	37	chr5	134223691	134223691	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttctctctggatggcgctgGagcacacttccctgacagag	11	12	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134223691	A	A	134223691	3	1	3	1	0	0	0	0	1	0	0	0	16920	1174	41	4	416	4	TXNDC15	5	134223691	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	149421	134223691	46691569	272	1477											
TXNDC15	79770	broad.mit.edu	37	chr5	134229390	134229390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccatcctcctggctgatgGttgcagttatttggaggtcc	12	10	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134229390	T	T	134229390	1	4	3	0	1	0	0	0	0	0	0	0	16920	1276	44	3		3	TXNDC15	5	134229390	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	5699	134229390	46685870	273	1478											
PCDHA2	56146	broad.mit.edu	37	chr5	140175812	140175812	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcgagagcgtgtcagcctaTgagctggtggtgaccgcacg	16	11	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140175812	C	C	140175812	2	2	3	1	0	0	0	0	0	0	0	1	11618	1471	51	5		5	PCDHA2	5	140175812	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	5946422	140175812	40739448	274	1479											
PCDHAC1	56135	broad.mit.edu	37	chr5	140308810	140308810	+	Frame_Shift_Del	DEL	C	-	-													gcgtggggagtacaatgctgCcgacctgcgaaatcttgcca							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140308810	-	-	140308810	7	5	3	1	0	1	0	1	0	0	0	0	11626	739	26	0	2335	0	PCDHAC1	5	140308810	Frame_Shift_Del	DEL	C	TCGA-05-4250-01A-01D-1105-08	132998	140308810	40606450	275	1480											
PCDHB9	56127	broad.mit.edu	37	chr5	140567311	140567311	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggcacaaagagatggtctTaaaaatatcagaaaatacag	8	6	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140567311	C	C	140567311	3	2	3	1	0	0	0	0	1	0	0	0	11643	1764	61	5	421	5	PCDHB9	5	140567311	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	258501	140567311	40347949	276	1481											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744565	140744565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcggagacccggtactctCcggcaccacgcacatccgtg	12	16	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140744565	A	A	140744565	3	1	3	1	0	0	0	0	1	0	0	0	11651	855	30	3	670	3	PCDHGA5	5	140744565	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	177254	140744565	40170695	277	1482											
PCDHGC4	56098	broad.mit.edu	37	chr5	140865302	140865302	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaagaagcgcagcgacGgcagcctggtcccagagctg	15	11	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140865302	A	A	140865302	3	1	3	1	0	0	0	0	1	0	0	0	11664	1116	39	4	564	4	PCDHGC4	5	140865302	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	120737	140865302	40049958	278	1483											
ARHGAP26	23092	broad.mit.edu	37	chr5	142437235	142437235	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccaggagtctcgggtctcTgaaatccacagccttgttca	9	12	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142437235	A	A	142437235	2	1	3	1	0	0	0	0	0	0	0	1	877	1567	55	5		5	ARHGAP26	5	142437235	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	1571933	142437235	38478025	279	1484											
PPP2R2B	5521	broad.mit.edu	37	chr5	146085940	146085940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtgaggcccccataggCcaagctcacaccacctgcat	9	17	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146085940	A	A	146085940	1	1	3	0	1	0	0	0	0	0	0	0	12486	754	26	3		3	PPP2R2B	5	146085940	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	3648705	146085940	34829320	280	1485											
SH3TC2	79628	broad.mit.edu	37	chr5	148406292	148406292	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagctgtagaaatggcagaGggatttggtggcctgaagct	16	5	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148406292	A	A	148406292	3	1	3	1	0	0	0	0	1	0	0	0	14375	1000	35	4	994	4	SH3TC2	5	148406292	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2320352	148406292	32508968	281	1486											
PPARGC1B	133522	broad.mit.edu	37	chr5	149216513	149216513	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggggtcagccccacttgctCtgaccactgcccctaccaga	9	17	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149216513	G	G	149216513	3	3	3	1	0	0	0	0	1	0	0	0	12397	913	32	4	2532	4	PPARGC1B	5	149216513	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	810221	149216513	31698747	282	1487											
CSF1R	1436	broad.mit.edu	37	chr5	149449494	149449494	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgctgttgtgggccctgcaCtcgtaggtttggttgtgctc	14	10	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149449494	T	T	149449494	2	4	3	1	0	0	0	0	0	0	0	1	3966	564	20	4		4	CSF1R	5	149449494	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	232981	149449494	31465766	283	1488											
ANXA6	309	broad.mit.edu	37	chr5	150503933	150503933	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacagttcccttcagctgtGagaagcagaaagagactcag	11	10	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150503933	C	C	150503933	1	2	3	0	1	0	0	0	0	0	0	0	722	1305	45	4		4	ANXA6	5	150503933	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1054439	150503933	30411327	284	1489											
SPARC	6678	broad.mit.edu	37	chr5	151051018	151051018	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggactaggtctagcaagggGacttctgagactggcactgc	15	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151051018	A	A	151051018	1	1	3	0	1	0	0	0	0	0	0	0	15111	1189	41	4		4	SPARC	5	151051018	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	547085	151051018	29864242	285	1490											
LARP1	23367	broad.mit.edu	37	chr5	154191175	154191175	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaatacctcggcaaattccGacgtcttgaagacttccgag	9	11	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154191175	A	A	154191175	3	1	3	1	0	0	0	0	1	0	0	0	8700	1058	37	4	2895	4	LARP1	5	154191175	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3140157	154191175	26724085	286	1491											
SGCD	6444	broad.mit.edu	37	chr5	156186311	156186311	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaacgaggcagaaggtcttCgagatctgcgtctgcgccaa	14	10	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156186311	G	G	156186311	3	3	3	1	0	0	0	0	1	0	0	0	14314	883	31	4	885	4	SGCD	5	156186311	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1995136	156186311	24728949	287	1492											
ODZ2	57451	broad.mit.edu	37	chr5	167631743	167631743	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagatatagtccttgtgatCcaaaacctaggcccagaatc	8	10	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167631743	A	A	167631743	1	1	3	0	1	0	0	0	0	0	0	0	10930	870	30	3		3	ODZ2	5	167631743	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	11445432	167631743	13283517	288	1493											
SLIT3	6586	broad.mit.edu	37	chr5	168112682	168112682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaagggcagggcagggCgggacacacctgcagggaga	17	11	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168112682	A	A	168112682	1	1	3	0	1	0	0	0	0	0	0	0	14855	783	27	3		3	SLIT3	5	168112682	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	480939	168112682	12802578	289	1494											
SLIT3	6586	broad.mit.edu	37	chr5	168620627	168620627	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtattcagataccactttAatcaatcagtcaatcaatca	3	10	6	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168620627	C	C	168620627	1	2	3	0	1	0	0	0	0	0	0	0	14855	377	13	5		5	SLIT3	5	168620627	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	507945	168620627	12294633	290	1495											
RANBP17	64901	broad.mit.edu	37	chr5	170341165	170341165	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttagaaaataatttttttTcccagttttcctggaaccag	6	7	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170341165	C	C	170341165	1	2	3	0	1	0	0	0	0	0	0	0	13135	1798	62	5		5	RANBP17	5	170341165	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	1720538	170341165	10574095	291	1496											
STK10	6793	broad.mit.edu	37	chr5	171481838	171481838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacccagcaccacctcaggCtgtgcccgtgttaagtcctc	9	16	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171481838	A	A	171481838	1	1	3	0	1	0	0	0	0	0	0	0	15404	812	28	3		3	STK10	5	171481838	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1140673	171481838	9433422	292	1497											
FAM153B	202134	broad.mit.edu	37	chr5	175530279	175530280	+	Nonsense_Mutation	DNP	GG	AT	AT													tccagttacaacggcgaggaGgaggacccagaggaggtgaa							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	175530280	AT	AT	175530279	4	1	3	1	0	0	0	0	0	1	0	0	5507	991	35	4	764	4	FAM153B	5	175530279	Nonsense_Mutation	DNP	GG	TCGA-05-4250-01A-01D-1105-08	4048441	175530279	5384981	293	1498											
RNF144B	255488	broad.mit.edu	37	chr6	18399744	18399744	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatagggattgaggagactGaagaatgctgaagacaggct	14	5	0	6			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18399744	A	A	18399744	1	1	3	0	1	0	0	0	0	0	0	0	13557	1305	45	4		4	RNF144B	6	18399744	5'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08		18399744	152715323	294	1499											
MBOAT1	154141	broad.mit.edu	37	chr6	20113163	20113163	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtaaaatagtatccagGgtagacaccatgccacaaag	10	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20113163	A	A	20113163	3	1	3	1	0	0	0	0	1	0	0	0	9449	1232	43	4	346	4	MBOAT1	6	20113163	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1713419	20113163	151001904	295	1500											
LRRC16A	55604	broad.mit.edu	37	chr6	25452335	25452335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatcggccagggaaaaaGtatactagctggatatacct	10	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25452335	T	T	25452335	1	4	3	0	1	0	0	0	0	0	0	0	9058	1044	36	3		3	LRRC16A	6	25452335	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	5339172	25452335	145662732	296	1501											
HIST1H2AG	8969	broad.mit.edu	37	chr6	27100922	27100922	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgctcttctagggccggtctCcagttccccgtgggccgagt	13	15	3	0	rs143036813		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27100922	G	G	27100922	2	3	3	1	0	0	0	0	0	0	0	1	7200	842	30	4		4	HIST1H2AG	6	27100922	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	1648587	27100922	144014145	297	1502											
HLA-F	3134	broad.mit.edu	37	chr6	29691944	29691944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggctgactgcggggaccGgctagggtctcacaccctcc	15	15	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29691944	T	T	29691944	1	4	3	0	1	0	0	0	0	0	0	0	7278	1131	39	1		1	HLA-F	6	29691944	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2591022	29691944	141423123	298	1503											
TRIM31	11074	broad.mit.edu	37	chr6	30072985	30072985	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgcttttgaagaatctGttttcatcttttttcctatc	4	8	4	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30072985	C	C	30072985	3	2	3	1	0	0	0	0	1	0	0	0	16629	1368	48	4	371	4	TRIM31	6	30072985	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	381041	30072985	141042082	299	1504											
DDR1	780	broad.mit.edu	37	chr6	30860208	30860208	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcaacctgggggaccccAgagcccgggctgtctcagtg	17	13	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30860208	G	G	30860208	3	3	3	1	0	0	0	0	1	0	0	0	4369	180	7	5	1014	5	DDR1	6	30860208	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	787223	30860208	140254859	300	1505											
TNXB	7148	broad.mit.edu	37	chr6	32018012	32018012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgggggtggcatctgtcaCggtcagctcccccaggcgag	16	13	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32018012	A	A	32018012	3	1	3	1	0	0	0	0	1	0	0	0	16469	536	19	3	5589	3	TNXB	6	32018012	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1157804	32018012	139097055	301	1506											
NOTCH4	4855	broad.mit.edu	37	chr6	32178643	32178643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggaatccaggggggcaGtggcagaaataggaggggcc	18	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32178643	T	T	32178643	3	4	3	1	0	0	0	0	1	0	0	0	10646	1020	36	3	3312	3	NOTCH4	6	32178643	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	160631	32178643	138936424	302	1507											
NOTCH4	4855	broad.mit.edu	37	chr6	32188208	32188208	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtccaggtgggcagaggcagGagaaagagcccacccggtca	16	11	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32188208	C	C	32188208	3	2	3	1	0	0	0	0	1	0	0	0	10646	1174	41	4	4978	4	NOTCH4	6	32188208	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	9565	32188208	138926859	303	1508											
COL11A2	1302	broad.mit.edu	37	chr6	33139750	33139750	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccacagcccctggtggtaTcagaatgccactcccaccct	7	19	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33139750	C	C	33139750	1	2	3	0	1	0	0	0	0	0	0	0	3700	1450	50	5		5	COL11A2	6	33139750	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	951542	33139750	137975317	304	1509											
COL11A2	1302	broad.mit.edu	37	chr6	33142405	33142405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaggaggcccagatgcCactccacccctggagacctc	12	15	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33142405	A	A	33142405	1	1	3	0	1	0	0	0	0	0	0	0	3700	609	21	2		2	COL11A2	6	33142405	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2655	33142405	137972662	305	1510											
C6orf106	64771	broad.mit.edu	37	chr6	34622570	34622570	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taggttcctatagaaaaagaGaaaaggcaacagacttcagt	9	6	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34622570	A	A	34622570	1	1	3	0	1	0	0	0	0	0	0	0	2342	957	33	4		4	C6orf106	6	34622570	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1480165	34622570	136492497	306	1511											
LHFPL5	222662	broad.mit.edu	37	chr6	35773816	35773816	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcttcatctgcaacacGgccacagtctataagatctg	7	12	5	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35773816	T	T	35773816	2	4	3	1	0	0	0	0	0	0	0	1	8840	1103	39	1		1	LHFPL5	6	35773816	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1151246	35773816	135341251	307	1512											
TREML2	79865	broad.mit.edu	37	chr6	41162312	41162312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcattgctgggagacgcGgtcactgtctgggaccccat	14	12	2	1	rs141822677	byFrequency;by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41162312	T	T	41162312	2	4	3	1	0	0	0	0	0	0	0	1	16597	1103	39	1		1	TREML2	6	41162312	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	5388496	41162312	129952755	308	1513											
TRERF1	55809	broad.mit.edu	37	chr6	42211039	42211039	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgtttccgccccagccGcatgatctttttccacgtgt	9	15	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42211039	A	A	42211039	3	1	3	1	0	0	0	0	1	0	0	0	16599	1086	38	4	812	4	TRERF1	6	42211039	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1048727	42211039	128904028	309	1514											
CAPN11	11131	broad.mit.edu	37	chr6	44141031	44141031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcacaggaggcgtggccCagagcttccaactccagagg	12	13	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44141031	A	A	44141031	3	1	3	1	0	0	0	0	1	0	0	0	2650	595	21	2	765	2	CAPN11	6	44141031	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1929992	44141031	126974036	310	1515											
AARS2	57505	broad.mit.edu	37	chr6	44279286	44279286	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcctgcagcagaaacCagcatggggtggggggggaa	16	11	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44279286	T	T	44279286	1	4	3	0	1	0	0	0	0	0	0	0	20	609	21	4		4	AARS2	6	44279286	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	138255	44279286	126835781	311	1516											
SLC25A27	9481	broad.mit.edu	37	chr6	46644292	46644292	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctacctctttaggaagaCacctattccacagagactga	6	11	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46644292	G	G	46644292	1	3	3	0	1	0	0	0	0	0	0	0	14604	493	17	4		4	SLC25A27	6	46644292	3'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	2365006	46644292	124470775	312	1517											
GCLC	2729	broad.mit.edu	37	chr6	53378980	53378980	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggatggaacactttgcctCtctgtatatttgaaactata	7	7	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53378980	G	G	53378980	1	3	3	0	1	0	0	0	0	0	0	0	6357	928	32	4		4	GCLC	6	53378980	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	6734688	53378980	117736087	313	1518											
ZNF451	26036	broad.mit.edu	37	chr6	57015521	57015521	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctctcttctcagaggaAgaaattgttgagcttccaga	8	8	3	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57015521	T	T	57015521	3	4	3	1	0	0	0	0	1	0	0	0	18049	69	3	5	2655	5	ZNF451	6	57015521	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	3636541	57015521	114099546	314	1519											
COL12A1	1303	broad.mit.edu	37	chr6	75823503	75823503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaggagaggaaagaaaAaaagaaaggaagaaagaaag	13	0	0	5			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75823503	G	G	75823503	1	3	3	0	1	0	0	0	0	0	0	0	3701	29	1	5		5	COL12A1	6	75823503	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	18807982	75823503	95291564	315	1520											
ELOVL4	6785	broad.mit.edu	37	chr6	80631256	80631256	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcaagttaaatggtagatCaagtcaaagtcctaggttct	9	6	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80631256	G	G	80631256	1	3	3	0	1	0	0	0	0	0	0	0	5118	841	29	4		4	ELOVL4	6	80631256	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4807753	80631256	90483811	316	1521											
MANEA	79694	broad.mit.edu	37	chr6	96034364	96034364	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcattttggcactttttattCtatttattttctctctgatg	4	7	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96034364	A	A	96034364	3	1	3	1	0	0	0	0	1	0	0	0	9313	912	32	3	51	3	MANEA	6	96034364	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	15403108	96034364	75080703	317	1522											
WISP3	8838	broad.mit.edu	37	chr6	112375623	112375623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaggtaagtcctctcccCcgactctttcccttccggag	8	17	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112375623	A	A	112375623	1	1	3	0	1	0	0	0	0	0	0	0	17501	638	22	2		2	WISP3	6	112375623	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	16341259	112375623	58739444	318	1523											
CLVS2	134829	broad.mit.edu	37	chr6	123319371	123319371	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccattttccagaatttaccCcgagtagtgtcatggttttg	8	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123319371	A	A	123319371	1	1	3	0	1	0	0	0	0	0	0	0	3604	638	22	2		2	CLVS2	6	123319371	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	10943748	123319371	47795696	319	1524											
STXBP5	134957	broad.mit.edu	37	chr6	147556517	147556517	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatccaaaatagggccacTtctagtctttcagatttctt	5	9	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147556517	G	G	147556517	1	3	3	0	1	0	0	0	0	0	0	0	15474	1624	56	5		5	STXBP5	6	147556517	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	24237146	147556517	23558550	320	1525											
MTHFD1L	25902	broad.mit.edu	37	chr6	151330762	151330762	+	Intron	DEL	C	-	-													tcaggcctggcggtgggaagCagaggagggcgcagtctctt							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151330762	-	-	151330762	6	5	3	0	1	1	0	1	0	0	0	0	10022	725	25	0		0	MTHFD1L	6	151330762	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	3774245	151330762	19784305	321	1526											
ZDHHC14	79683	broad.mit.edu	37	chr6	158014043	158014043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcaaacggcaccagttcaGgggggtaccgcccgcctccc	12	17	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158014043	T	T	158014043	3	4	3	1	0	0	0	0	1	0	0	0	17730	1000	35	2	440	2	ZDHHC14	6	158014043	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	6683281	158014043	13101024	322	1527											
WTAP	9589	broad.mit.edu	37	chr6	160157394	160157395	+	Intron	INS	-	A	A													ggggcttttttaagcactttINSaaaaaaaaatagacttgaag							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160157395	A	A	160157394	6	5	3	0	1	1	1	0	0	0	0	0	17536	1769	61	0		0	WTAP	6	160157394	Intron	INS	-	TCGA-05-4250-01A-01D-1105-08	2143351	160157394	10957673	323	1528											
C7orf27	221927	broad.mit.edu	37	chr7	2593887	2593887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctgctccctgtcccagCctctgcgtctggtctctgga	10	18	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2593887	A	A	2593887	1	1	3	0	1	0	0	0	0	0	0	0	2407	754	26	3		3	C7orf27	7	2593887	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08		2593887	156544776	324	1529											
CARD11	84433	broad.mit.edu	37	chr7	2959040	2959040	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatggtgcccatatccaggtCatggtctgtgaaagggtcga	13	8	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2959040	A	A	2959040	3	1	3	1	0	0	0	0	1	0	0	0	2671	826	29	3	1020	3	CARD11	7	2959040	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	365153	2959040	156179623	325	1530											
SDK1	221935	broad.mit.edu	37	chr7	4308337	4308337	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctcctgacgagcaacccGtctgcgtacctaagtgtggc	10	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4308337	A	A	4308337	1	1	3	0	1	0	0	0	0	0	0	0	14081	1160	40	4		4	SDK1	7	4308337	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	1349297	4308337	154830326	326	1531											
DAGLB	221955	broad.mit.edu	37	chr7	6470059	6470059	+	Intron	DEL	T	-	-													ttgaaatatctcaaaatagcTtttttttttaagggaaatat							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6470059	-	-	6470059	6	5	3	0	1	1	0	1	0	0	0	0	4260	1624	56	0		0	DAGLB	7	6470059	Intron	DEL	T	TCGA-05-4250-01A-01D-1105-08	2161722	6470059	152668604	327	1532											
BZW2	28969	broad.mit.edu	37	chr7	16745717	16745717	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgaggaaaattaaatgGctcaacaagcacaataccta	8	7	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16745717	T	T	16745717	1	4	3	0	1	0	0	0	0	0	0	0	1589	1218	42	3		3	BZW2	7	16745717	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	10275658	16745717	142392946	328	1533											
HDAC9	9734	broad.mit.edu	37	chr7	18869084	18869085	+	Missense_Mutation	DNP	GG	TT	TT													tgttcttctctattccgcagGgggttctgcttttttaattc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	18869085	TT	TT	18869084	3	4	3	1	0	0	0	0	1	0	0	0	7081	1246	43	2	2500	2	HDAC9	7	18869084	Missense_Mutation	DNP	GG	TCGA-05-4250-01A-01D-1105-08	2123367	18869084	140269579	329	1534											
ITGB8	3696	broad.mit.edu	37	chr7	20441336	20441336	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatttcctttttcctcctAaatttaggttcttttcaatg	3	8	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20441336	G	G	20441336	1	3	3	0	1	0	0	0	0	0	0	0	7971	377	13	5		5	ITGB8	7	20441336	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1572252	20441336	138697327	330	1535											
ABCB5	340273	broad.mit.edu	37	chr7	20782645	20782645	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcagcggctgtgggaaaaGcacttctgttcaacttctgc	12	10	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20782645	C	C	20782645	3	2	3	1	0	0	0	0	1	0	0	0	44	971	34	4	3305	4	ABCB5	7	20782645	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	341309	20782645	138356018	331	1536											
STK31	56164	broad.mit.edu	37	chr7	23749978	23749978	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtagtagtttttgtggtacGtgcagtggtggccgcttcaa	14	6	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23749978	A	A	23749978	1	1	3	0	1	0	0	0	0	0	0	0	15414	1160	40	4		4	STK31	7	23749978	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2967333	23749978	135388685	332	1537											
C7orf31	136895	broad.mit.edu	37	chr7	25176554	25176554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgctctttgatactaaTttaaagacattgaaatttgg	7	5	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25176554	C	C	25176554	1	2	3	0	1	0	0	0	0	0	0	0	2412	1508	52	5		5	C7orf31	7	25176554	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	1426576	25176554	133962109	333	1538											
NT5C3	51251	broad.mit.edu	37	chr7	33102147	33102147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcccagccggcccctcgCgtgctctgggcgcgccgagc	15	19	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33102147	A	A	33102147	1	1	3	0	1	0	0	0	0	0	0	0	10783	783	27	3		3	NT5C3	7	33102147	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	7925593	33102147	126036516	334	1539											
TXNDC3	51314	broad.mit.edu	37	chr7	37936447	37936447	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagttttcagtaggctgggtCttctgaaagcaccgttcttt	10	9	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37936447	G	G	37936447	1	3	3	0	1	0	0	0	0	0	0	0	16924	928	32	4		4	TXNDC3	7	37936447	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4834300	37936447	121202216	335	1540											
C7orf10	79783	broad.mit.edu	37	chr7	40234473	40234473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaatcaattgtgtaaaGttaaaattctatcatgtggg	11	3	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40234473	T	T	40234473	1	4	3	0	1	0	0	0	0	0	0	0	2401	1044	36	3		3	C7orf10	7	40234473	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2298026	40234473	118904190	336	1541											
C7orf10	79783	broad.mit.edu	37	chr7	40900032	40900032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacgatgacagggccatcgGggagctgctcagcgctggag	16	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40900032	T	T	40900032	3	4	3	1	0	0	0	0	1	0	0	0	2401	1232	43	2	1317	2	C7orf10	7	40900032	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	665559	40900032	118238631	337	1542											
GLI3	2737	broad.mit.edu	37	chr7	42006017	42006017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgctcacgttctgcggcCggccctcggcctgtgacgcc	12	19	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42006017	A	A	42006017	3	1	3	1	0	0	0	0	1	0	0	0	6503	652	23	1	2092	1	GLI3	7	42006017	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1105985	42006017	117132646	338	1543											
HECW1	23072	broad.mit.edu	37	chr7	43592036	43592036	+	Intron	DEL	G	-	-													aattgatgtaaaataaaattGactaaagcgaacaagtcagt							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43592036	-	-	43592036	6	5	3	0	1	1	0	1	0	0	0	0	7109	1305	45	0		0	HECW1	7	43592036	Intron	DEL	G	TCGA-05-4250-01A-01D-1105-08	1586019	43592036	115546627	339	1544											
CAMK2B	816	broad.mit.edu	37	chr7	44323760	44323760	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcttcttggtgttgatgaTcttggctgcatactcatggc	11	9	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44323760	C	C	44323760	3	2	3	1	0	0	0	0	1	0	0	0	2626	1435	50	5	1961	5	CAMK2B	7	44323760	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	731724	44323760	114814903	340	1545											
NPC1L1	29881	broad.mit.edu	37	chr7	44560615	44560615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacatttgatgttgggcCggtcgttcaggaaccaggga	16	7	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44560615	A	A	44560615	3	1	3	1	0	0	0	0	1	0	0	0	10666	652	23	1	1055	1	NPC1L1	7	44560615	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	236855	44560615	114578048	341	1546											
ADCY1	107	broad.mit.edu	37	chr7	45699470	45699470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctactgtatctgcctgGgccctccctcctggcatgga	11	16	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45699470	T	T	45699470	1	4	3	0	1	0	0	0	0	0	0	0	292	1247	43	2		2	ADCY1	7	45699470	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1138855	45699470	113439193	342	1547											
ZNF679	168417	broad.mit.edu	37	chr7	63720730	63720730	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacctggtctccctgggtgaGgataacttcaatacacaatt	8	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63720730	C	C	63720730	1	2	3	0	1	0	0	0	0	0	0	0	18213	1015	35	4		4	ZNF679	7	63720730	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	18021260	63720730	95417933	343	1548											
BAZ1B	9031	broad.mit.edu	37	chr7	72880868	72880868	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatatatcaaatatatcttCatgtataaaagatgctaatt	3	4	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72880868	G	G	72880868	1	3	3	0	1	0	0	0	0	0	0	0	1335	841	29	4		4	BAZ1B	7	72880868	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	9160138	72880868	86257795	344	1549											
ELN	2006	broad.mit.edu	37	chr7	73455693	73455693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcaggccaggttccgtcCtgggcactgacggggactga	17	11	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73455693	A	A	73455693	1	1	3	0	1	0	0	0	0	0	0	0	5113	696	24	2		2	ELN	7	73455693	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	574825	73455693	85682970	345	1550											
GTF2IRD2	84163	broad.mit.edu	37	chr7	74227165	74227165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggcagcatgctagatcCtaggtaaacacacatgggtg	11	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74227165	A	A	74227165	1	1	3	0	1	0	0	0	0	0	0	0	6934	696	24	2		2	GTF2IRD2	7	74227165	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	771472	74227165	84911498	346	1551											
SRRM3	222183	broad.mit.edu	37	chr7	75894605	75894605	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgggatcctggtgggaGgctgggcaacttgggggctg	19	9	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75894605	A	A	75894605	1	1	3	0	1	0	0	0	0	0	0	0	15288	1015	35	4		4	SRRM3	7	75894605	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1667440	75894605	83244058	347	1552											
CD36	948	broad.mit.edu	37	chr7	80302011	80302011	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactaccttctcttctgctgTaagaaaaataagttttgaat	5	7	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80302011	C	C	80302011	1	2	3	0	1	0	0	0	0	0	0	0	3037	1653	57	5		5	CD36	7	80302011	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	4407406	80302011	78836652	348	1553											
GRM3	2913	broad.mit.edu	37	chr7	86468581	86468581	+	Frame_Shift_Del	DEL	C	-	-													cattggcccagtcaccattgCctgtctgggttttatgtgta							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86468581	-	-	86468581	7	5	3	1	0	1	0	1	0	0	0	0	6864	739	26	0	1761	0	GRM3	7	86468581	Frame_Shift_Del	DEL	C	TCGA-05-4250-01A-01D-1105-08	6166570	86468581	72670082	349	1554											
ADAM22	53616	broad.mit.edu	37	chr7	87792285	87792285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatattttcaaaatgaagGtgaattaatagattcatttt	6	3	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87792285	T	T	87792285	1	4	3	0	1	0	0	0	0	0	0	0	244	1276	44	3		3	ADAM22	7	87792285	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1323704	87792285	71346378	350	1555											
ZNF804B	219578	broad.mit.edu	37	chr7	88956742	88956742	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaaacaagaaaaagcaCttaaacgacttcatcagctg	6	8	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88956742	G	G	88956742	3	3	3	1	0	0	0	0	1	0	0	0	18300	565	20	4	344	4	ZNF804B	7	88956742	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1164457	88956742	70181921	351	1556											
SAMD9L	219285	broad.mit.edu	37	chr7	92763290	92763290	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttctcgatgtctgtctcTgtacactcattttcacagag	6	11	6	1	rs142212031	byFrequency	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92763290	C	C	92763290	2	2	3	1	0	0	0	0	0	0	0	1	13938	1567	55	5		5	SAMD9L	7	92763290	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	3806548	92763290	66375373	352	1557											
CASD1	64921	broad.mit.edu	37	chr7	94181710	94181710	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaacaaagcagagtgcaatGaactccatccgtctgtttct	7	10	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94181710	A	A	94181710	3	1	3	1	0	0	0	0	1	0	0	0	2690	1291	45	4	2067	4	CASD1	7	94181710	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1418420	94181710	64956953	353	1558											
TECPR1	25851	broad.mit.edu	37	chr7	97870217	97870217	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcccaccgagatgtgcatGaccccgttttcagatccagg	9	14	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97870217	T	T	97870217	2	4	3	1	0	0	0	0	0	0	0	1	15865	1277	45	3		3	TECPR1	7	97870217	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	3688507	97870217	61268446	354	1559											
CYP3A4	1576	broad.mit.edu	37	chr7	99370101	99370101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgggggggacaggatgaagTggacgtggaaccttcctgga	18	7	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99370101	A	A	99370101	1	1	3	0	1	0	0	0	0	0	0	0	4211	1711	59	5		5	CYP3A4	7	99370101	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	1499884	99370101	59768562	355	1560											
TRIM4	89122	broad.mit.edu	37	chr7	99490024	99490024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccaatagccagcagcaCtccaataaatcgcccagatg	9	13	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99490024	A	A	99490024	3	1	3	1	0	0	0	0	1	0	0	0	16638	565	20	3	241	3	TRIM4	7	99490024	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	119923	99490024	59648639	356	1561											
MUC17	140453	broad.mit.edu	37	chr7	100685193	100685193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccaaccaattcatctcCtacaactgctgaagttacca	3	14	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100685193	A	A	100685193	3	1	3	1	0	0	0	0	1	0	0	0	10068	681	24	2	10506	2	MUC17	7	100685193	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1195169	100685193	58453470	357	1562											
MYL10	93408	broad.mit.edu	37	chr7	101267537	101267539	+	In_Frame_Del	DEL	CTC	-	-													ctgctcttttccgagctcttCtcggtgcctgcgaggtagca							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101267539	-	-	101267537	7	5	3	1	0	1	0	1	0	0	0	0	10138	913	32	0	622	0	MYL10	7	101267537	In_Frame_Del	DEL	CTC	TCGA-05-4250-01A-01D-1105-08	582344	101267537	57871126	358	1563											
PSMC2	5701	broad.mit.edu	37	chr7	102989143	102989143	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaccggcacggtctgatccgGaaatatggcctcaatatgtg	11	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102989143	A	A	102989143	1	1	3	0	1	0	0	0	0	0	0	0	12792	1189	41	4		4	PSMC2	7	102989143	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1721606	102989143	56149520	359	1564											
MLL5	55904	broad.mit.edu	37	chr7	104702637	104702637	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccgtagaagctagccctgTggtagttgagaaatccaaca	10	9	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104702637	C	C	104702637	3	2	3	1	0	0	0	0	1	0	0	0	9717	1696	59	5	104	5	MLL5	7	104702637	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	1713494	104702637	54436026	360	1565											
TMEM168	64418	broad.mit.edu	37	chr7	112407532	112407532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcgtcccttttcagtcCagcagatgttattactggag	10	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112407532	A	A	112407532	3	1	3	1	0	0	0	0	1	0	0	0	16206	595	21	2	283	2	TMEM168	7	112407532	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	7704895	112407532	46731131	361	1566											
PAX4	5078	broad.mit.edu	37	chr7	127251682	127251682	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatagcaggagggacccaGtggttccagggcaggcaggg	18	9	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127251682	A	A	127251682	2	1	3	1	0	0	0	0	0	0	0	1	11575	1020	36	4		4	PAX4	7	127251682	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	14844150	127251682	31886981	362	1567											
FAM71F1	84691	broad.mit.edu	37	chr7	128358754	128358754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaacaattgagcagcaCtgtgctaaagcaccctcttt	6	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128358754	A	A	128358754	1	1	3	0	1	0	0	0	0	0	0	0	5663	580	20	3		3	FAM71F1	7	128358754	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1107072	128358754	30779909	363	1568											
PLXNA4	91584	broad.mit.edu	37	chr7	131878806	131878806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacccagccagatcactgCtggccaagactcaccatgaa	8	15	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131878806	A	A	131878806	1	1	3	0	1	0	0	0	0	0	0	0	12217	812	28	3		3	PLXNA4	7	131878806	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	3520052	131878806	27259857	364	1569											
WDR91	29062	broad.mit.edu	37	chr7	134870995	134870996	+	Frame_Shift_Ins	INS	-	CACGGTGACCACAGGGG	CACGGTGACCACAGGGG													tccatggcagtgctccagtcINScacggtgaccacaggggctc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CACGGTGACCACAGGGG	134870996	CACGGTGACCACAGGGG	CACGGTGACCACAGGGG	134870995	7	5	3	1	0	1	1	0	0	0	0	0	17465	855	30	0	95	0	WDR91	7	134870995	Frame_Shift_Ins	INS	-	TCGA-05-4250-01A-01D-1105-08	2992189	134870995	24267668	365	1570											
CHRM2	1129	broad.mit.edu	37	chr7	136623175	136623175	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctatgaaggaggcaaacTtcttgttgagggtcttgatc	12	6	3	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136623175	G	G	136623175	1	3	3	0	1	0	0	0	0	0	0	0	3408	1624	56	5		5	CHRM2	7	136623175	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	1752180	136623175	22515488	366	1571											
DGKI	9162	broad.mit.edu	37	chr7	137154236	137154236	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagagcccaccctatcaattGatgccttgctcttcaacttc	5	14	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137154236	A	A	137154236	1	1	3	0	1	0	0	0	0	0	0	0	4511	1305	45	4		4	DGKI	7	137154236	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	531061	137154236	21984427	367	1572											
TBXAS1	6916	broad.mit.edu	37	chr7	139611091	139611091	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatcaagcaggtgttggttGagaacttcagtaactttacc	10	7	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139611091	A	A	139611091	3	1	3	1	0	0	0	0	1	0	0	0	15786	1291	45	4	321	4	TBXAS1	7	139611091	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2456855	139611091	19527572	368	1573											
PRSS37	136242	broad.mit.edu	37	chr7	141540759	141540759	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgcaatcctgcctctgtctCaccccatccattaaactgtg	5	16	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141540759	A	A	141540759	1	1	3	0	1	0	0	0	0	0	0	0	12732	841	29	3		3	PRSS37	7	141540759	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1929668	141540759	17597904	369	1574											
EPHB6	2051	broad.mit.edu	37	chr7	142567015	142567015	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcagccggggtgtcatagtCcctgaaaggagggaggctct	15	10	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142567015	T	T	142567015	1	4	3	0	1	0	0	0	0	0	0	0	5220	870	30	4		4	EPHB6	7	142567015	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1026256	142567015	16571648	370	1575											
TRPV6	55503	broad.mit.edu	37	chr7	142569271	142569271	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgggctgggcttcctctGccccagagctgaaggagtaa	14	11	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142569271	A	A	142569271	1	1	3	0	1	0	0	0	0	0	0	0	16725	1334	46	4		4	TRPV6	7	142569271	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	2256	142569271	16569392	371	1576											
KEL	3792	broad.mit.edu	37	chr7	142651458	142651458	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtcaggtattcccgaaagAtctggaggaaggaaatgtca	12	6	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142651458	G	G	142651458	3	3	3	1	0	0	0	0	1	0	0	0	8212	347	12	5	1509	5	KEL	7	142651458	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	82187	142651458	16487205	372	1577											
OR2A25	392138	broad.mit.edu	37	chr7	143771552	143771552	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcacggtgccccagatGctggtgaacctcctgcatcc	11	15	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143771552	A	A	143771552	3	1	3	1	0	0	0	0	1	0	0	0	11072	1319	46	4	242	4	OR2A25	7	143771552	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1120094	143771552	15367111	373	1578											
OR2A12	346525	broad.mit.edu	37	chr7	143792957	143792957	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtggggcttttctttggcAgcgccattgtcatgtacatg	13	8	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143792957	G	G	143792957	3	3	3	1	0	0	0	0	1	0	0	0	11069	188	7	5	759	5	OR2A12	7	143792957	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	21405	143792957	15345706	374	1579											
CUL1	8454	broad.mit.edu	37	chr7	148481087	148481087	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtcgcttcataaacaacAacgcggttaccaagatggcc	10	11	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148481087	C	C	148481087	3	2	3	1	0	0	0	0	1	0	0	0	4087	130	5	5	1254	5	CUL1	7	148481087	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	4688130	148481087	10657576	375	1580											
SSPO	23145	broad.mit.edu	37	chr7	149523945	149523945	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggggtggggagcagggatGaggaagggtagggaggagga	25	2	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149523945	A	A	149523945	1	1	3	0	1	0	0	0	0	0	0	0	15307	1305	45	4		4	SSPO	7	149523945	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1042858	149523945	9614718	376	1581											
ABP1	26	broad.mit.edu	37	chr7	150553664	150553664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaggggtgttttcagacCtaagcaaccaagagctgaag	13	8	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150553664	A	A	150553664	3	1	3	1	0	0	0	0	1	0	0	0	98	680	24	2	108	2	ABP1	7	150553664	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1029719	150553664	8584999	377	1582											
ATG9B	285973	broad.mit.edu	37	chr7	150714102	150714102	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggggtgaaggcagaagggGaggccaggcttgggactcac	20	7	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150714102	A	A	150714102	1	1	3	0	1	0	0	0	0	0	0	0	1107	1189	41	4		4	ATG9B	7	150714102	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	160438	150714102	8424561	378	1583											
RHEB	6009	broad.mit.edu	37	chr7	151164231	151164231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgagcatgaagacttgcCttgtgaagctgccccgtcca	10	14	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151164231	A	A	151164231	3	1	3	1	0	0	0	0	1	0	0	0	13437	681	24	2	29	2	RHEB	7	151164231	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	450129	151164231	7974432	379	1584											
NOM1	64434	broad.mit.edu	37	chr7	156742967	156742967	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgggcgcttttagcggcgaAcgaggaggaggaccgagaga	18	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156742967	G	G	156742967	3	3	3	1	0	0	0	0	1	0	0	0	10625	43	2	5	538	5	NOM1	7	156742967	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	5578736	156742967	2395696	380	1585											
WDR60	55112	broad.mit.edu	37	chr7	158662678	158662678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgctttacctggtacacaAcactgtataactttggttat	6	10	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158662678	G	G	158662678	1	3	3	0	1	0	0	0	0	0	0	0	17438	58	2	5		5	WDR60	7	158662678	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1919711	158662678	475985	381	1586											
WDR60	55112	broad.mit.edu	37	chr7	158695181	158695181	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaaaaaaaggaaatacaaGaaattcaaagagctattaat	5	5	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158695181	A	A	158695181	3	1	3	1	0	0	0	0	1	0	0	0	17438	943	33	4	1290	4	WDR60	7	158695181	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	32503	158695181	443482	382	1587											
ARHGEF10	9639	broad.mit.edu	37	chr8	1808322	1808322	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctactccagcccggtcatCatctgcgccacgtccctgga	9	18	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1808322	T	T	1808322	2	4	3	1	0	0	0	0	0	0	0	1	896	816	29	4		4	ARHGEF10	8	1808322	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08		1808322	144555700	383	1588											
CSMD1	64478	broad.mit.edu	37	chr8	2830668	2830668	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggctgcagtcctgaccatGacccattgagcaaacacgtg	10	14	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2830668	T	T	2830668	4	4	3	1	0	0	0	0	0	1	0	0	3978	1294	45	3	1856	3	CSMD1	8	2830668	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1022346	2830668	143533354	384	1589											
ANGPT2	285	broad.mit.edu	37	chr8	6389879	6389879	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccacatcagttaacttccGcgtttgctccgctgtttggt	8	12	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6389879	A	A	6389879	3	1	3	1	0	0	0	0	1	0	0	0	611	1086	38	4	1104	4	ANGPT2	8	6389879	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3559211	6389879	139974143	385	1590											
PRSS55	203074	broad.mit.edu	37	chr8	10389131	10389131	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaggaagctaaggaaggaGtgaggacaagacttgcattg	17	4	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10389131	A	A	10389131	1	1	3	0	1	0	0	0	0	0	0	0	12740	1044	36	4		4	PRSS55	8	10389131	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	3999252	10389131	135974891	386	1591											
RP1L1	94137	broad.mit.edu	37	chr8	10468624	10468624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccagagaatggtcatccCcagggtccacctcggggcct	11	15	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10468624	A	A	10468624	3	1	3	1	0	0	0	0	1	0	0	0	13644	623	22	2	4222	2	RP1L1	8	10468624	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	79493	10468624	135895398	387	1592											
BLK	640	broad.mit.edu	37	chr8	11407582	11407582	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctagatttttatttcttgggGacaggcagtgcaggagggag	15	5	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11407582	C	C	11407582	1	2	3	0	1	0	0	0	0	0	0	0	1450	1189	41	4		4	BLK	8	11407582	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	938958	11407582	134956440	388	1593											
MTUS1	57509	broad.mit.edu	37	chr8	17507277	17507277	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagttaacccaactccaCagttctaaaatgcagggctc	8	12	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17507277	T	T	17507277	1	4	3	0	1	0	0	0	0	0	0	0	10059	493	17	4		4	MTUS1	8	17507277	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	6099695	17507277	128856745	389	1594											
NAT2	10	broad.mit.edu	37	chr8	18257533	18257533	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggacattgaagcatattTtgaaagaattggctataaga	9	4	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18257533	A	A	18257533	3	1	3	1	0	0	0	0	1	0	0	0	10271	1841	64	5	22	5	NAT2	8	18257533	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	750256	18257533	128106489	390	1595											
SLC25A37	51312	broad.mit.edu	37	chr8	23423746	23423746	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtcaacgtcatgatcatGggtgcagggccggcccatgc	15	12	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23423746	A	A	23423746	3	1	3	1	0	0	0	0	1	0	0	0	14615	1348	47	4	342	4	SLC25A37	8	23423746	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	5166213	23423746	122940276	391	1596											
ADAM28	10863	broad.mit.edu	37	chr8	24207290	24207290	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaaagggtagctggaaTatgtgctaagtaaagaaaca	13	3	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24207290	A	A	24207290	1	1	3	0	1	0	0	0	0	0	0	0	246	1421	49	5		5	ADAM28	8	24207290	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	783544	24207290	122156732	392	1597											
PTK2B	2185	broad.mit.edu	37	chr8	27293395	27293395	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgacaccacagggaacAttcttttcctcctttatcct	6	13	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27293395	G	G	27293395	1	3	3	0	1	0	0	0	0	0	0	0	12869	232	8	5		5	PTK2B	8	27293395	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	3086105	27293395	119070627	393	1598											
ZNF395	55893	broad.mit.edu	37	chr8	28218359	28218359	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accccagccccctaccccaaGactggcaagacgggacacct	8	19	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28218359	C	C	28218359	1	2	3	0	1	0	0	0	0	0	0	0	18008	957	33	4		4	ZNF395	8	28218359	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	924964	28218359	118145663	394	1599											
UNC5D	137970	broad.mit.edu	37	chr8	35406908	35406908	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgatgcttatattatcaagAgcaaccctattgcactcagg	7	9	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35406908	T	T	35406908	3	4	3	1	0	0	0	0	1	0	0	0	17121	304	11	5	208	5	UNC5D	8	35406908	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	7188549	35406908	110957114	395	1600											
KCNU1	157855	broad.mit.edu	37	chr8	36721883	36721883	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccaacaatcccttgtgaaGagatgtgccaactcactgag	8	11	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36721883	A	A	36721883	1	1	3	0	1	0	0	0	0	0	0	0	8163	957	33	4		4	KCNU1	8	36721883	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1314975	36721883	109642139	396	1601											
GPR124	25960	broad.mit.edu	37	chr8	37696652	37696652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaggcatggaaggggcCcctaccctgtccacttcccg	13	15	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37696652	A	A	37696652	1	1	3	0	1	0	0	0	0	0	0	0	6703	638	22	2		2	GPR124	8	37696652	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	974769	37696652	108667370	397	1602											
ADAM2	2515	broad.mit.edu	37	chr8	39627142	39627142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtaagggtttccataaaCtacctacccttagaataaac	5	9	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39627142	A	A	39627142	1	1	3	0	1	0	0	0	0	0	0	0	241	580	20	3		3	ADAM2	8	39627142	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1930490	39627142	106736880	398	1603											
ADAM2	2515	broad.mit.edu	37	chr8	39666959	39666959	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaactataacatgcatttcTatatactttgcaaaatcttg	3	8	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39666959	G	G	39666959	2	3	3	1	0	0	0	0	0	0	0	1	241	1512	53	5		5	ADAM2	8	39666959	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	39817	39666959	106697063	399	1604											
POLB	5423	broad.mit.edu	37	chr8	42207610	42207610	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actattttttaagcagacacAatcgtcagttagtttatttt	5	6	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42207610	G	G	42207610	1	3	3	0	1	0	0	0	0	0	0	0	12284	145	5	5		5	POLB	8	42207610	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	2540651	42207610	104156412	400	1605											
RNF170	81790	broad.mit.edu	37	chr8	42743112	42743112	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataactgacttctaatatatTtggtttctgataggctgcaa	7	6	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42743112	A	A	42743112	1	1	3	0	1	0	0	0	0	0	0	0	13573	1856	64	5		5	RNF170	8	42743112	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	535502	42743112	103620910	401	1606											
PRKDC	5591	broad.mit.edu	37	chr8	48777168	48777168	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcatccaccacaattgtgctGaagaattctctcaaagcatc	6	12	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48777168	A	A	48777168	2	1	3	1	0	0	0	0	0	0	0	1	12627	1281	45	4		4	PRKDC	8	48777168	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	6034056	48777168	97586854	402	1607											
PRKDC	5591	broad.mit.edu	37	chr8	48826536	48826536	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatccaggaaaatgacaggTttcatctctctaaagggcac	8	10	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48826536	A	A	48826536	3	1	3	1	0	0	0	0	1	0	0	0	12627	1722	60	5	9931	5	PRKDC	8	48826536	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	49368	48826536	97537486	403	1608											
SNTG1	54212	broad.mit.edu	37	chr8	51363054	51363054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctttatttaattaaaaGtcctttcatctgcataacaa	2	8	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51363054	T	T	51363054	1	4	3	0	1	0	0	0	0	0	0	0	14988	1044	36	3		3	SNTG1	8	51363054	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2536518	51363054	95000968	404	1609											
ST18	9705	broad.mit.edu	37	chr8	53045646	53045646	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcttctttttcttccttGgtaggggtcattttgacacc	10	9	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53045646	T	T	53045646	2	4	3	1	0	0	0	0	0	0	0	1	15330	1335	47	2		2	ST18	8	53045646	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1682592	53045646	93318376	405	1610											
CYP7A1	1581	broad.mit.edu	37	chr8	59405181	59405181	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgaaggtcatatgataTagagtctgaactacagacag	10	5	2	5			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59405181	C	C	59405181	1	2	3	0	1	0	0	0	0	0	0	0	4229	1421	49	5		5	CYP7A1	8	59405181	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	6359535	59405181	86958841	406	1611											
KCNB2	9312	broad.mit.edu	37	chr8	73849959	73849959	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcccccaggtttcccaAgcagaaactgttccctttct	7	15	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73849959	C	C	73849959	3	2	3	1	0	0	0	0	1	0	0	0	8083	72	3	5	2375	5	KCNB2	8	73849959	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	14444778	73849959	72514063	407	1612											
ZFHX4	79776	broad.mit.edu	37	chr8	77618058	77618058	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccaagtgaaatagccCggggagacgaagacagttca	11	10	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77618058	A	A	77618058	2	1	3	1	0	0	0	0	0	0	0	1	17761	643	23	1		1	ZFHX4	8	77618058	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	3768099	77618058	68745964	408	1613											
CHMP4C	92421	broad.mit.edu	37	chr8	82670559	82670559	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagctcaactacatgtggTcagatagttgcctaaaatga	8	10	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82670559	A	A	82670559	1	1	3	0	1	0	0	0	0	0	0	0	3389	1682	58	5		5	CHMP4C	8	82670559	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	5052501	82670559	63693463	409	1614											
SLC7A13	157724	broad.mit.edu	37	chr8	87242442	87242442	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccaatgatattaataagcAaaaaacttgtgccccaccaa	4	11	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87242442	G	G	87242442	3	3	3	1	0	0	0	0	1	0	0	0	14809	131	5	5	1363	5	SLC7A13	8	87242442	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	4571883	87242442	59121580	410	1615											
CNGB3	54714	broad.mit.edu	37	chr8	87660204	87660204	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtctgtaaaagttgacCaatcacaatatattatttgt	6	5	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87660204	G	G	87660204	1	3	3	0	1	0	0	0	0	0	0	0	3633	609	21	4		4	CNGB3	8	87660204	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	417762	87660204	58703818	411	1616											
CNGB3	54714	broad.mit.edu	37	chr8	87671611	87671611	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acactggcttgaggactattGaagcaggagcttggcctctc	12	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87671611	T	T	87671611	1	4	3	0	1	0	0	0	0	0	0	0	3633	1305	45	3		3	CNGB3	8	87671611	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	11407	87671611	58692411	412	1617											
PGCP	10404	broad.mit.edu	37	chr8	98155450	98155450	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttcatgcttctggccagGaatcctgggtctgcaacttt	10	10	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98155450	T	T	98155450	1	4	3	0	1	0	0	0	0	0	0	0	11881	1189	41	3		3	PGCP	8	98155450	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	10483839	98155450	48208572	413	1618											
RIMS2	9699	broad.mit.edu	37	chr8	104928554	104928554	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatggttattttatcctatgGagtttattgaagtttaagat	8	2	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104928554	T	T	104928554	1	4	3	0	1	0	0	0	0	0	0	0	13479	1189	41	3		3	RIMS2	8	104928554	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	6773104	104928554	41435468	414	1619											
RIMS2	9699	broad.mit.edu	37	chr8	104987541	104987541	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgcaaaggactttgtacaTacataactataatatttatt	5	6	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104987541	A	A	104987541	1	1	3	0	1	0	0	0	0	0	0	0	13479	1421	49	5		5	RIMS2	8	104987541	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	58987	104987541	41376481	415	1620											
DPYS	1807	broad.mit.edu	37	chr8	105405183	105405183	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccctcgaaaatgttgaaGttaacagcctgatgatgagt	10	7	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105405183	A	A	105405183	2	1	3	1	0	0	0	0	0	0	0	1	4786	1020	36	4		4	DPYS	8	105405183	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	417642	105405183	40958839	416	1621											
DPYS	1807	broad.mit.edu	37	chr8	105463529	105463529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtcgcagcaaactttgGgatcagcccagcttcgccag	11	12	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105463529	T	T	105463529	3	4	3	1	0	0	0	0	1	0	0	0	4786	1232	43	2	1223	2	DPYS	8	105463529	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	58346	105463529	40900493	417	1622											
EXT1	2131	broad.mit.edu	37	chr8	119123195	119123195	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccggctgtggctcctcgAtgccctaaactgcaagcctc	9	16	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119123195	G	G	119123195	3	3	3	1	0	0	0	0	1	0	0	0	5366	333	12	5	2193	5	EXT1	8	119123195	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	13659666	119123195	27240827	418	1623											
ENPP2	5168	broad.mit.edu	37	chr8	120594882	120594882	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcaggtgcttcttataTttttttgatgagatatggta	12	3	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120594882	A	A	120594882	1	1	3	0	1	0	0	0	0	0	0	0	5172	1508	52	5		5	ENPP2	8	120594882	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	1471687	120594882	25769140	419	1624											
ENPP2	5168	broad.mit.edu	37	chr8	120613783	120613783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagtgctcgctcttgcacCcaggccaaatgctctctatt	9	13	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120613783	A	A	120613783	1	1	3	0	1	0	0	0	0	0	0	0	5172	638	22	2		2	ENPP2	8	120613783	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	18901	120613783	25750239	420	1625											
HAS2	3037	broad.mit.edu	37	chr8	122641407	122641407	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggcaaacaggctttggatGatgaggtgtgatgccaaaaa	13	5	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122641407	C	C	122641407	3	2	3	1	0	0	0	0	1	0	0	0	7028	1280	45	4	1496	4	HAS2	8	122641407	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2027624	122641407	23722615	421	1626											
WDR67	93594	broad.mit.edu	37	chr8	124152957	124152957	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcatttttgtattctagCgttatataaattagtgattt	6	3	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124152957	T	T	124152957	1	4	3	0	1	0	0	0	0	0	0	0	17445	783	27	4		4	WDR67	8	124152957	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1511550	124152957	22211065	422	1627											
FER1L6	654463	broad.mit.edu	37	chr8	125052358	125052358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaatacctgcatctttgGgtgtgtagatgtttcagact	10	7	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125052358	T	T	125052358	1	4	3	0	1	0	0	0	0	0	0	0	5872	1247	43	2		2	FER1L6	8	125052358	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	899401	125052358	21311664	423	1628											
POU5F1B	5462	broad.mit.edu	37	chr8	128428254	128428254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggagggccaggaatcgGgccgggggttgggccaggct	20	10	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128428254	T	T	128428254	3	4	3	1	0	0	0	0	1	0	0	0	12378	1232	43	2	145	2	POU5F1B	8	128428254	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3375896	128428254	17935768	424	1629											
FLJ43860	389690	broad.mit.edu	37	chr8	142477633	142477635	+	In_Frame_Del	DEL	GCT	-	-													gctcaactctgccagtgtgaGctgctgcatgatatcctgta							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142477635	-	-	142477633	7	5	3	1	0	1	0	1	0	0	0	0	5987	971	34	0	1820	0	FLJ43860	8	142477633	In_Frame_Del	DEL	GCT	TCGA-05-4250-01A-01D-1105-08	14049379	142477633	3886389	425	1630											
JAK2	3717	broad.mit.edu	37	chr9	5081748	5081748	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaactattaacagaaaatGacatgttaccaaatatgagg	7	5	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5081748	T	T	5081748	3	4	3	1	0	0	0	0	1	0	0	0	8008	1290	45	3	2524	3	JAK2	9	5081748	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08		5081748	136131683	426	1631											
FREM1	158326	broad.mit.edu	37	chr9	14748736	14748736	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagcttgtcattaaacctaGatggatggttttcccaccag	9	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14748736	A	A	14748736	1	1	3	0	1	0	0	0	0	0	0	0	6104	957	33	4		4	FREM1	9	14748736	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	9666988	14748736	126464695	427	1632											
C9orf24	84688	broad.mit.edu	37	chr9	34379748	34379748	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctggagaaggaggaagcCgcgagcatggaggggttggg	20	6	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34379748	T	T	34379748	1	4	3	0	1	0	0	0	0	0	0	0	2501	667	23	4		4	C9orf24	9	34379748	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	19631012	34379748	106833683	428	1633											
FLJ46321	389763	broad.mit.edu	37	chr9	84603941	84603941	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaggaactgtgggtgaacaCccaagagagatgccctgttg	13	8	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84603941	T	T	84603941	1	4	3	0	1	0	0	0	0	0	0	0	5990	522	18	4		4	FLJ46321	9	84603941	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	50224193	84603941	56609490	429	1634											
NFIL3	4783	broad.mit.edu	37	chr9	94171718	94171718	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtttgctatcccctgcttCaaatacaagttctctgggtc	7	11	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94171718	T	T	94171718	2	4	3	1	0	0	0	0	0	0	0	1	10468	825	29	4		4	NFIL3	9	94171718	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	9567777	94171718	47041713	430	1635											
CTSL2	1515	broad.mit.edu	37	chr9	99799918	99799918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaggcaaacatatagctGgtggactttatgtctactta	9	7	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99799918	T	T	99799918	1	4	3	0	1	0	0	0	0	0	0	0	4073	1363	47	2		2	CTSL2	9	99799918	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	5628200	99799918	41413513	431	1636											
SVEP1	79987	broad.mit.edu	37	chr9	113169628	113169628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaagccttaagtcagagCctgctagaatgtgtccaggt	11	9	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113169628	A	A	113169628	3	1	3	1	0	0	0	0	1	0	0	0	15538	739	26	3	2507	3	SVEP1	9	113169628	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	13369710	113169628	28043803	432	1637											
AMBP	259	broad.mit.edu	37	chr9	116838847	116838847	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtgggtctctgggtctctCtcagctttccagccccaccc	9	16	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116838847	A	A	116838847	1	1	3	0	1	0	0	0	0	0	0	0	564	928	32	3		3	AMBP	9	116838847	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	3669219	116838847	24374584	433	1638											
COL27A1	85301	broad.mit.edu	37	chr9	116956463	116956463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacttgggatagcagaaGgaggaacttggactttgtca	14	5	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116956463	T	T	116956463	1	4	3	0	1	0	0	0	0	0	0	0	3717	1015	35	2		2	COL27A1	9	116956463	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	117616	116956463	24256968	434	1639											
TLR4	7099	broad.mit.edu	37	chr9	120476467	120476467	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagccaggatgaggactgGgtaaggaatgagctagtaaa	14	5	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476467	A	A	120476467	4	1	3	1	0	0	0	0	0	1	0	0	16076	1241	43	4	2071	4	TLR4	9	120476467	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3520004	120476467	20736964	435	1640											
OR1J2	26740	broad.mit.edu	37	chr9	125273575	125273575	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacccttctcctgacccgGctgtctttctgtgctgcgaa	8	16	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125273575	A	A	125273575	2	1	3	1	0	0	0	0	0	0	0	1	11054	1190	42	4		4	OR1J2	9	125273575	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	4797108	125273575	15939856	436	1641											
GARNL3	84253	broad.mit.edu	37	chr9	130119519	130119519	+	Frame_Shift_Del	DEL	C	-	-													agatctgtctgtctgactctCccatggtgatgaccttagtg							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130119519	-	-	130119519	7	5	3	1	0	1	0	1	0	0	0	0	6303	855	30	0	2039	0	GARNL3	9	130119519	Frame_Shift_Del	DEL	C	TCGA-05-4250-01A-01D-1105-08	4845944	130119519	11093912	437	1642											
SET	6418	broad.mit.edu	37	chr9	131454184	131454184	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaagtagaacagaaatAtaacaaactccgccaaccat	5	9	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131454184	G	G	131454184	3	3	3	1	0	0	0	0	1	0	0	0	14241	449	16	5	305	5	SET	9	131454184	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	1334665	131454184	9759247	438	1643											
EHMT1	79813	broad.mit.edu	37	chr9	140729017	140729017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccatctccgctgccggcGggacggttttaggaacgggg	17	11	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140729017	A	A	140729017	1	1	3	0	1	0	0	0	0	0	0	0	5023	1131	39	4		4	EHMT1	9	140729017	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	9274833	140729017	484414	439	1644											
CACNA1B	774	broad.mit.edu	37	chr9	140809010	140809010	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgcttagcaccttgctgtCcctgctaggttcctgctgtt	9	13	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140809010	A	A	140809010	1	1	3	0	1	0	0	0	0	0	0	0	2565	870	30	3		3	CACNA1B	9	140809010	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	79993	140809010	404421	440	1645											
CACNA1B	774	broad.mit.edu	37	chr9	141010276	141010276	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggaggcacctgaggggcGtgtctgccatccgaccctgc	14	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141010276	A	A	141010276	1	1	3	0	1	0	0	0	0	0	0	0	2565	1160	40	4		4	CACNA1B	9	141010276	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	201266	141010276	203155	441	1646											
ADARB2	105	broad.mit.edu	37	chr10	1599057	1599057	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcacaacccctcctcaTgggggaaggtttggtacctg	11	12	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1599057	C	C	1599057	1	2	3	0	1	0	0	0	0	0	0	0	283	1479	51	5		5	ADARB2	10	1599057	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08		1599057	133935690	442	1647											
SFMBT2	57713	broad.mit.edu	37	chr10	7239387	7239387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacaggatggagagaacGgaggtctcggtaaatgccag	15	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7239387	T	T	7239387	1	4	3	0	1	0	0	0	0	0	0	0	14271	1131	39	1		1	SFMBT2	10	7239387	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	5640330	7239387	128295360	443	1648											
UPF2	26019	broad.mit.edu	37	chr10	12009279	12009280	+	Intron	DNP	CC	AA	AA													aaattatttcactttatccaCcatttataattaaaacttta							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	12009280	AA	AA	12009279	1	1	3	0	1	0	0	0	0	0	0	0	17130	522	18	3		3	UPF2	10	12009279	Intron	DNP	CC	TCGA-05-4250-01A-01D-1105-08	4769892	12009279	123525468	444	1649											
FRMD4A	55691	broad.mit.edu	37	chr10	13702491	13702491	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgttgtgcgacggtggccGaggagggagtcccttgtgag	18	9	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13702491	T	T	13702491	2	4	3	1	0	0	0	0	0	0	0	1	6111	1057	37	3		3	FRMD4A	10	13702491	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1693212	13702491	121832256	445	1650											
HSPA14	51182	broad.mit.edu	37	chr10	14891690	14891690	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacttgtcattttcttctgtCatcagaattttatatttttt	3	7	5	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14891690	G	G	14891690	1	3	3	0	1	0	0	0	0	0	0	0	7476	841	29	4		4	HSPA14	10	14891690	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1189199	14891690	120643057	446	1651											
STAM	8027	broad.mit.edu	37	chr10	17726590	17726590	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcatagtctccctttttatCgtagtcttttgtctataaca	4	9	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17726590	T	T	17726590	1	4	3	0	1	0	0	0	0	0	0	0	15366	899	31	4		4	STAM	10	17726590	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2834900	17726590	117808157	447	1652											
SLC39A12	221074	broad.mit.edu	37	chr10	18250889	18250889	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaagacattcaaggacttCtaagggaggtaagtatttgt	10	5	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18250889	A	A	18250889	1	1	3	0	1	0	0	0	0	0	0	0	14729	928	32	3		3	SLC39A12	10	18250889	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	524299	18250889	117283858	448	1653											
ZEB1	6935	broad.mit.edu	37	chr10	31809098	31809098	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcaagaaacgcttttccCattctggctcctatagctca	6	13	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31809098	T	T	31809098	3	4	3	1	0	0	0	0	1	0	0	0	17749	594	21	4	875	4	ZEB1	10	31809098	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	13558209	31809098	103725649	449	1654											
CUL2	8453	broad.mit.edu	37	chr10	35320562	35320562	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaagctcatgtagaaattGataataaatcttacaaaggg	8	5	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35320562	A	A	35320562	1	1	3	0	1	0	0	0	0	0	0	0	4088	1305	45	4		4	CUL2	10	35320562	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	3511464	35320562	100214185	450	1655											
ANKRD30A	91074	broad.mit.edu	37	chr10	37447428	37447428	+	Intron	DEL	C	-	-													gtatattaattgttttgtttCcaaacccatttaggctacct							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37447428	-	-	37447428	6	5	3	0	1	1	0	1	0	0	0	0	658	870	30	0		0	ANKRD30A	10	37447428	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	2126866	37447428	98087319	451	1656											
RBP3	5949	broad.mit.edu	37	chr10	48387854	48387854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaattccaggaatgcggtcCttggcattctcagggatatg	11	9	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48387854	A	A	48387854	3	1	3	1	0	0	0	0	1	0	0	0	13265	680	24	2	735	2	RBP3	10	48387854	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	10940426	48387854	87146893	452	1657											
FRMPD2	143162	broad.mit.edu	37	chr10	49393811	49393811	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcacacgcacacaatcctGaaaacaaaagtagctcatat	4	11	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49393811	A	A	49393811	1	1	3	0	1	0	0	0	0	0	0	0	6118	1305	45	4		4	FRMPD2	10	49393811	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1005957	49393811	86140936	453	1658											
PCDH15	65217	broad.mit.edu	37	chr10	56128953	56128953	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgtctctcaccactattCgcacttcatggtagataata	5	12	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56128953	T	T	56128953	3	4	3	1	0	0	0	0	1	0	0	0	11605	884	31	4	7226	4	PCDH15	10	56128953	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	6735142	56128953	79405794	454	1659											
FAM13C	220965	broad.mit.edu	37	chr10	61083938	61083938	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagcattattatgctggaaGtgggtctcggggcagggaag	16	5	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61083938	A	A	61083938	1	1	3	0	1	0	0	0	0	0	0	0	5500	1044	36	4		4	FAM13C	10	61083938	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	4954985	61083938	74450809	455	1660											
KIAA1274	27143	broad.mit.edu	37	chr10	72298908	72298908	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggctgcggaaggttgtcTgggtgagccttcgggaggag	21	6	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72298908	C	C	72298908	3	2	3	1	0	0	0	0	1	0	0	0	8290	1580	55	5	1680	5	KIAA1274	10	72298908	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	11214970	72298908	63235839	456	1661											
C10orf105	414152	broad.mit.edu	37	chr10	73472617	73472617	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgggctgggggaggcGgagccacacacggccctgag	21	10	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73472617	A	A	73472617	1	1	3	0	1	0	0	0	0	0	0	0	1591	1131	39	4		4	C10orf105	10	73472617	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	1173709	73472617	62062130	457	1662											
FAM190B	54462	broad.mit.edu	37	chr10	86215678	86215678	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttctatgatttctgttGcatcttgttctggatttctg	7	7	6	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86215678	A	A	86215678	1	1	3	0	1	0	0	0	0	0	0	0	5569	1334	46	4		4	FAM190B	10	86215678	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	12743061	86215678	49319069	458	1663											
ANKRD1	27063	broad.mit.edu	37	chr10	92680175	92680175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattcttcacagacaatgcCgcaggaggctcttggtcctt	9	12	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92680175	A	A	92680175	1	1	3	0	1	0	0	0	0	0	0	0	637	667	23	1		1	ANKRD1	10	92680175	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	6464497	92680175	42854572	459	1664											
BTAF1	9044	broad.mit.edu	37	chr10	93683798	93683804	+	5'UTR	DEL	AGGTCGC	-	-													gcctcagctgcgcggcgcgtAggtcgcggggagctccgaac							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93683804	-	-	93683798	6	5	3	0	1	1	0	1	0	0	0	0	1545	435	15	0		0	BTAF1	10	93683798	5'UTR	DEL	AGGTCGC	TCGA-05-4250-01A-01D-1105-08	1003623	93683798	41850949	460	1665											
CPEB3	22849	broad.mit.edu	37	chr10	93840946	93840946	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttttcaggcagcctagaTgaattcatggactaatgcca	8	9	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93840946	G	G	93840946	1	3	3	0	1	0	0	0	0	0	0	0	3834	1479	51	5		5	CPEB3	10	93840946	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	157148	93840946	41693801	461	1666											
CEP55	55165	broad.mit.edu	37	chr10	95276915	95276916	+	Frame_Shift_Del	DEL	AG	-	-													gaagatgataggcataaaacAgagaagatacaaaaactcag							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95276916	-	-	95276915	7	5	3	1	0	1	0	1	0	0	0	0	3285	175	7	0	921	0	CEP55	10	95276915	Frame_Shift_Del	DEL	AG	TCGA-05-4250-01A-01D-1105-08	1435969	95276915	40257832	462	1667											
TLL2	7093	broad.mit.edu	37	chr10	98155853	98155853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggttggggaggcGgggggaacagcgcttgccac	21	7	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98155853	T	T	98155853	1	4	3	0	1	0	0	0	0	0	0	0	16069	1131	39	1		1	TLL2	10	98155853	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2878938	98155853	37378894	463	1668											
PIK3AP1	118788	broad.mit.edu	37	chr10	98363772	98363772	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcccgctgctcacactgagGaggctccgggtgctggagcg	15	13	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98363772	A	A	98363772	2	1	3	1	0	0	0	0	0	0	0	1	12003	1161	41	4		4	PIK3AP1	10	98363772	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	207919	98363772	37170975	464	1669											
RRP12	23223	broad.mit.edu	37	chr10	99150638	99150638	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatggtcaccccagagggtCcctgaagagcagctggtgca	14	11	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99150638	A	A	99150638	1	1	3	0	1	0	0	0	0	0	0	0	13797	870	30	3		3	RRP12	10	99150638	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	786866	99150638	36384109	465	1670											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118228809	118228810	+	Missense_Mutation	DNP	GG	CT	CT													acattattttttaaacacagGgtccctttccccatttgccc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	118228810	CT	CT	118228809	3	2	3	1	0	0	0	0	1	0	0	0	12247	1232	43	4	1074	4	PNLIPRP3	10	118228809	Missense_Mutation	DNP	GG	TCGA-05-4250-01A-01D-1105-08	19078171	118228809	17305938	466	1671											
C10orf82	143379	broad.mit.edu	37	chr10	118425379	118425379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccttcagcaagactggCcagcaaggaattcagagccc	10	13	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118425379	A	A	118425379	1	1	3	0	1	0	0	0	0	0	0	0	1631	754	26	3		3	C10orf82	10	118425379	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	196570	118425379	17109368	467	1672											
PRLHR	2834	broad.mit.edu	37	chr10	120354273	120354273	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcagcgggtgcaccagcaCgacgtagcggtccactgcga	13	15	1	0	rs144077709		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120354273	G	G	120354273	3	3	3	1	0	0	0	0	1	0	0	0	12636	536	19	4	632	4	PRLHR	10	120354273	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1928894	120354273	15180474	468	1673											
IKZF5	64376	broad.mit.edu	37	chr10	124753980	124753980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgattagtgctcttctGctatagcccagattgcttgt	9	8	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124753980	T	T	124753980	3	4	3	1	0	0	0	0	1	0	0	0	7688	1310	46	3	687	3	IKZF5	10	124753980	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	4399707	124753980	10780767	469	1674											
FANK1	92565	broad.mit.edu	37	chr10	127697497	127697497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgcaggccatgcaaaGccacagtggtcttttggggt	14	10	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127697497	T	T	127697497	1	4	3	0	1	0	0	0	0	0	0	0	5729	986	34	3		3	FANK1	10	127697497	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2943517	127697497	7837250	470	1675											
C10orf90	118611	broad.mit.edu	37	chr10	128118366	128118366	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccaagtacctcttagatcGcatatgcatctccttctctg	5	13	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128118366	A	A	128118366	4	1	3	1	0	0	0	0	0	1	0	0	1634	1095	38	4	160	4	C10orf90	10	128118366	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	420869	128118366	7416381	471	1676											
DOCK1	1793	broad.mit.edu	37	chr10	129152931	129152931	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttttccctgatttccAggtacggagatatgaggaga	10	7	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129152931	G	G	129152931	5	3	3	1	0	0	0	0	0	0	1	0	4724	202	7	5	3286	5	DOCK1	10	129152931	Splice_Site	SNP	A	TCGA-05-4250-01A-01D-1105-08	1034565	129152931	6381816	472	1677											
MKI67	4288	broad.mit.edu	37	chr10	129902310	129902310	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggggcatctctttgtgctCgtggcagtgtctgttagttc	13	8	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129902310	A	A	129902310	2	1	3	1	0	0	0	0	0	0	0	1	9691	871	31	3		3	MKI67	10	129902310	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	749379	129902310	5632437	473	1678											
CD151	977	broad.mit.edu	37	chr11	837379	837379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtggtgctgggagggcGcgtgcatccccagggcctcc	19	12	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	837379	T	T	837379	1	4	3	0	1	0	0	0	0	0	0	0	2995	1102	38	3		3	CD151	11	837379	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08		837379	134169137	474	1679											
MUC2	4583	broad.mit.edu	37	chr11	1102476	1102476	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcgaactcatggaggcCcccggggagtgctgtaagaa	15	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1102476	A	A	1102476	2	1	3	1	0	0	0	0	0	0	0	1	10069	610	22	2		2	MUC2	11	1102476	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	265097	1102476	133904040	475	1680											
MUC5B	727897	broad.mit.edu	37	chr11	1155305	1155305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaggccccagctttccgGgtgaacactgggtgggtatt	15	9	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1155305	T	T	1155305	1	4	3	0	1	0	0	0	0	0	0	0	10073	1247	43	2		2	MUC5B	11	1155305	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	52829	1155305	133851211	476	1681											
BRSK2	9024	broad.mit.edu	37	chr11	1472754	1472754	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggggtgctccttctccacgTggccccacctcccactgcag	10	19	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1472754	A	A	1472754	1	1	3	0	1	0	0	0	0	0	0	0	1533	1711	59	5		5	BRSK2	11	1472754	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	317449	1472754	133533762	477	1682											
ZNF195	7748	broad.mit.edu	37	chr11	3380968	3380968	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcttatgtttagtaaggtCtgagaaccacttgaagatgc	9	7	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3380968	A	A	3380968	3	1	3	1	0	0	0	0	1	0	0	0	17884	913	32	3	623	3	ZNF195	11	3380968	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1908214	3380968	131625548	478	1683											
OR51Q1	390061	broad.mit.edu	37	chr11	5443760	5443760	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccttcatggattctcCtttatggagtcttctgtcct	6	11	5	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5443760	T	T	5443760	2	4	3	1	0	0	0	0	0	0	0	1	11198	668	24	4		4	OR51Q1	11	5443760	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	2062792	5443760	129562756	479	1684											
NAV2	89797	broad.mit.edu	37	chr11	20070465	20070465	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgtggacctcaaccagtCtccgctagcctccagcccca	8	17	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20070465	T	T	20070465	3	4	3	1	0	0	0	0	1	0	0	0	10278	913	32	4	4261	4	NAV2	11	20070465	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	14626705	20070465	114936051	480	1685											
ELP4	26610	broad.mit.edu	37	chr11	31531495	31531495	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cattgcgggcacgcgaccgtCggtgcggaatggacagctgc	16	12	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31531495	T	T	31531495	3	4	3	1	0	0	0	0	1	0	0	0	5124	893	31	4	166	4	ELP4	11	31531495	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	11461030	31531495	103475021	481	1686											
C11orf41	25758	broad.mit.edu	37	chr11	33640201	33640201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgtggaatccgcaacagcgGatacgatgtgagtctctggt	14	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33640201	T	T	33640201	3	4	3	1	0	0	0	0	1	0	0	0	1652	1174	41	3	4587	3	C11orf41	11	33640201	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2108706	33640201	101366315	482	1687											
LDLRAD3	143458	broad.mit.edu	37	chr11	36120153	36120153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcagccttgcagcccttGtacaggtaggtacccgtgtt	10	13	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36120153	T	T	36120153	1	4	3	0	1	0	0	0	0	0	0	0	8779	1392	48	3		3	LDLRAD3	11	36120153	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2479952	36120153	98886363	483	1688											
MYBPC3	4607	broad.mit.edu	37	chr11	47364216	47364216	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcatggcctcgttgatgaTcaggtggtgtctctgcccgt	13	11	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47364216	C	C	47364216	3	2	3	1	0	0	0	0	1	0	0	0	10107	1435	50	5	2359	5	MYBPC3	11	47364216	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	11244063	47364216	87642300	484	1689											
OR4C11	219429	broad.mit.edu	37	chr11	55371295	55371295	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtaagtgtccatgcaggcAagtttcaacaagggctgcaa	11	8	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55371295	T	T	55371295	2	4	3	1	0	0	0	0	0	0	0	1	11139	117	5	5		5	OR4C11	11	55371295	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	8007079	55371295	79635221	485	1690											
OR5L2	26338	broad.mit.edu	37	chr11	55595263	55595263	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcctaagtcttgcttgctCtgatgtcactgtgaatgaga	9	9	4	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595263	A	A	55595263	3	1	3	1	0	0	0	0	1	0	0	0	11265	913	32	3	571	3	OR5L2	11	55595263	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	223968	55595263	79411253	486	1691											
SPRYD5	84767	broad.mit.edu	37	chr11	55648410	55648410	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggtccatgtgggggaCtcttggaattgggcttttgg	18	5	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55648410	A	A	55648410	1	1	3	0	1	0	0	0	0	0	0	0	15229	580	20	3		3	SPRYD5	11	55648410	5'Flank	SNP	C	TCGA-05-4250-01A-01D-1105-08	53147	55648410	79358106	487	1692											
OR5M10	390167	broad.mit.edu	37	chr11	56344619	56344619	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacattgccatctttttgacAcgggtgtcagagcaggccag	11	10	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56344619	T	T	56344619	2	4	3	1	0	0	0	0	0	0	0	1	11267	146	6	5		5	OR5M10	11	56344619	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	696209	56344619	78661897	488	1693											
OR5AP2	338675	broad.mit.edu	37	chr11	56409724	56409724	+	Frame_Shift_Del	DEL	G	-	-													ctactgagaaagaaatacatGggggtgtggagacagagatc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56409724	-	-	56409724	7	5	3	1	0	1	0	1	0	0	0	0	11238	1335	47	0	762	0	OR5AP2	11	56409724	Frame_Shift_Del	DEL	G	TCGA-05-4250-01A-01D-1105-08	65105	56409724	78596792	489	1694											
SLC43A1	8501	broad.mit.edu	37	chr11	57258837	57258837	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acggaggagtagaacccaacTgggcaggatgggaagggcag	18	7	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57258837	A	A	57258837	5	1	3	1	0	0	0	0	0	0	1	0	14746	1594	55	5	646	5	SLC43A1	11	57258837	Splice_Site	SNP	T	TCGA-05-4250-01A-01D-1105-08	849113	57258837	77747679	490	1695											
OR5B17	219965	broad.mit.edu	37	chr11	58126656	58126656	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtatgtgttattttattAtagcaatgatttgttttcta	6	2	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58126656	C	C	58126656	1	2	3	0	1	0	0	0	0	0	0	0	11243	464	16	5		5	OR5B17	11	58126656	5'Flank	SNP	A	TCGA-05-4250-01A-01D-1105-08	867819	58126656	76879860	491	1696											
GPR44	11251	broad.mit.edu	37	chr11	60620811	60620811	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaccacctgcaggcagcGgtccaggctgatggcgctga	14	15	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60620811	A	A	60620811	3	1	3	1	0	0	0	0	1	0	0	0	6760	1116	39	4	806	4	GPR44	11	60620811	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2494155	60620811	74385705	492	1697											
ZP1	22917	broad.mit.edu	37	chr11	60636958	60636958	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcccgtcccctgcctgGgtatgctaggtggcctcacc	14	15	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60636958	A	A	60636958	1	1	3	0	1	0	0	0	0	0	0	0	18344	1247	43	4		4	ZP1	11	60636958	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	16147	60636958	74369558	493	1698											
UBXN1	51035	broad.mit.edu	37	chr11	62444254	62444254	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccctactcccccagtttCtagtcctggtttctagtctt	5	16	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62444254	G	G	62444254	1	3	3	0	1	0	0	0	0	0	0	0	17037	913	32	4		4	UBXN1	11	62444254	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1807296	62444254	72562262	494	1699											
HEPHL1	341208	broad.mit.edu	37	chr11	93778921	93778921	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttacagacgcttcacggatGgaacctactccatagagatc	8	11	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93778921	C	C	93778921	3	2	3	1	0	0	0	0	1	0	0	0	7122	1349	47	4	259	4	HEPHL1	11	93778921	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	31334667	93778921	41227595	495	1700											
MMP13	4322	broad.mit.edu	37	chr11	102816471	102816471	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccataatatggttagtatCatcatatctatttaaagaaa	4	5	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102816471	T	T	102816471	3	4	3	1	0	0	0	0	1	0	0	0	9745	826	29	4	204	4	MMP13	11	102816471	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	9037550	102816471	32190045	496	1701											
ACAT1	38	broad.mit.edu	37	chr11	108016773	108016773	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagagcaagactgttggaAaaaaaaaaaatctgaaaata	8	4	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108016773	G	G	108016773	1	3	3	0	1	0	0	0	0	0	0	0	121	29	1	5		5	ACAT1	11	108016773	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	5200302	108016773	26989743	497	1702											
CRTAM	56253	broad.mit.edu	37	chr11	122741925	122741925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgtttcaagtaaatgGgtgcaatgttattcaaaata	8	4	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122741925	T	T	122741925	1	4	3	0	1	0	0	0	0	0	0	0	3929	1247	43	2		2	CRTAM	11	122741925	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	14725152	122741925	12264591	498	1703											
ZNF202	7753	broad.mit.edu	37	chr11	123597574	123597574	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attaagtctacctggattgtCctcaaagactatttcccaat	5	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123597574	T	T	123597574	3	4	3	1	0	0	0	0	1	0	0	0	17889	855	30	4	872	4	ZNF202	11	123597574	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	855649	123597574	11408942	499	1704											
KDM5A	5927	broad.mit.edu	37	chr12	493005	493005	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcaccacaacctccgcctCctgggttcaagcaattctcc	6	18	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	493005	A	A	493005	1	1	3	0	1	0	0	0	0	0	0	0	8203	870	30	3		3	KDM5A	12	493005	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08		493005	133358890	500	1705											
CACNA1C	775	broad.mit.edu	37	chr12	2704937	2704937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaacaagcacctgttgCcagctgctggggagagctga	14	11	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2704937	A	A	2704937	1	1	3	0	1	0	0	0	0	0	0	0	2566	754	26	3		3	CACNA1C	12	2704937	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2211932	2704937	131146958	501	1706											
NDUFA9	4704	broad.mit.edu	37	chr12	4791405	4791405	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttttccacctggtgaagTacatctttgctgtggctcac	8	12	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4791405	C	C	4791405	3	2	3	1	0	0	0	0	1	0	0	0	10367	1638	57	5	869	5	NDUFA9	12	4791405	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	2086468	4791405	129060490	502	1707											
CLEC12A	160364	broad.mit.edu	37	chr12	10132026	10132026	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatatttctctacaactgatGagtaacatgaatatctccaa	4	8	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10132026	T	T	10132026	3	4	3	1	0	0	0	0	1	0	0	0	3529	1290	45	3	292	3	CLEC12A	12	10132026	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	5340621	10132026	123719869	503	1708											
PIK3C2G	5288	broad.mit.edu	37	chr12	18552547	18552547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatagcaacatttgttaGtgcagcaaactccagtaaat	6	7	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18552547	T	T	18552547	1	4	3	0	1	0	0	0	0	0	0	0	12006	1044	36	3		3	PIK3C2G	12	18552547	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	8420521	18552547	115299348	504	1709											
PDE3A	5139	broad.mit.edu	37	chr12	20704805	20704805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaatgtaccatcatcccGtccaaccactacggacccat	6	15	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20704805	T	T	20704805	1	4	3	0	1	0	0	0	0	0	0	0	11731	1160	40	3		3	PDE3A	12	20704805	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2152258	20704805	113147090	505	1710											
LST-3TM12	338821	broad.mit.edu	37	chr12	21196342	21196342	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttccttgtgtctggaataGtatccattatttcttctata	6	7	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21196342	A	A	21196342	3	1	3	1	0	0	0	0	1	0	0	0	9153	1029	36	4	683	4	LST-3TM12	12	21196342	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	491537	21196342	112655553	506	1711											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	3	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	4201943	25398285	108453610	507	1712											
MRPS35	60488	broad.mit.edu	37	chr12	27907986	27907986	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttggccagggcctctccacAttttgcaaacttctcttccc	7	15	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27907986	G	G	27907986	1	3	3	0	1	0	0	0	0	0	0	0	9938	232	8	5		5	MRPS35	12	27907986	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	2509701	27907986	105943909	508	1713											
TMTC1	83857	broad.mit.edu	37	chr12	29659837	29659837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctaggcgatccaatttgGcaagattttccttcagcagt	8	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29659837	T	T	29659837	3	4	3	1	0	0	0	0	1	0	0	0	16383	1203	42	3	61	3	TMTC1	12	29659837	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1751851	29659837	104192058	509	1714											
TMTC1	83857	broad.mit.edu	37	chr12	29911607	29911607	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacacggcacagttgcgatcAcagagaagggcattcttagc	11	11	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29911607	T	T	29911607	1	4	3	0	1	0	0	0	0	0	0	0	16383	174	6	5		5	TMTC1	12	29911607	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	251770	29911607	103940288	510	1715											
SLC11A2	4891	broad.mit.edu	37	chr12	51386501	51386501	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccaacttgggcgacgagtGagactccatctcaaaaaaaa	8	11	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51386501	C	C	51386501	1	2	3	0	1	0	0	0	0	0	0	0	14494	1305	45	4		4	SLC11A2	12	51386501	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	21474894	51386501	82465394	511	1716											
SLC11A2	4891	broad.mit.edu	37	chr12	51386719	51386719	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccagcacaacaccctgtgaGaggccaagaggaaggatatg	12	11	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51386719	C	C	51386719	1	2	3	0	1	0	0	0	0	0	0	0	14494	957	33	4		4	SLC11A2	12	51386719	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	218	51386719	82465176	512	1717											
SLC11A2	4891	broad.mit.edu	37	chr12	51389289	51389289	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgattttggggggcagacGagaagctagagattatttct	14	4	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51389289	A	A	51389289	1	1	3	0	1	0	0	0	0	0	0	0	14494	1073	37	4		4	SLC11A2	12	51389289	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2570	51389289	82462606	513	1718											
KRT85	3891	broad.mit.edu	37	chr12	52755390	52755390	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgtacagagtctacccctGaaaggcaagaagggctccct	11	11	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52755390	T	T	52755390	1	4	3	0	1	0	0	0	0	0	0	0	8570	1305	45	3		3	KRT85	12	52755390	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1366101	52755390	81096505	514	1719											
KRT5	3852	broad.mit.edu	37	chr12	52910540	52910540	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatgtcctgcttggccttCtgcagggcctcctccagctc	10	17	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52910540	T	T	52910540	2	4	3	1	0	0	0	0	0	0	0	1	8550	912	32	4		4	KRT5	12	52910540	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	155150	52910540	80941355	515	1720											
KRT72	140807	broad.mit.edu	37	chr12	52981431	52981431	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcacctgcactcctcgctctCcagcagcttgcggtaggtgg	11	15	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52981431	G	G	52981431	3	3	3	1	0	0	0	0	1	0	0	0	8556	864	30	4	253	4	KRT72	12	52981431	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	70891	52981431	80870464	516	1721											
EIF4B	1975	broad.mit.edu	37	chr12	53400346	53400346	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctccgagcgtgatccactGatttcctgaagtcggggaat	11	12	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53400346	A	A	53400346	1	1	3	0	1	0	0	0	0	0	0	0	5069	1305	45	4		4	EIF4B	12	53400346	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	418915	53400346	80451549	517	1722											
SP7	121340	broad.mit.edu	37	chr12	53722569	53722569	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggcaagacatgctggggCcctggttgcaagaggtgggg	20	7	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53722569	G	G	53722569	2	3	3	1	0	0	0	0	0	0	0	1	15083	726	26	4		4	SP7	12	53722569	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	322223	53722569	80129326	518	1723											
STAT2	6773	broad.mit.edu	37	chr12	56745374	56745374	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatccaggaagcatataAaggattattcaacatgattc	7	6	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56745374	C	C	56745374	1	2	3	0	1	0	0	0	0	0	0	0	15383	29	1	5		5	STAT2	12	56745374	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	3022805	56745374	77106521	519	1724											
NXPH4	11247	broad.mit.edu	37	chr12	57619152	57619152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctacgctcgccctggaGggggtgcttcctgggctggg	17	12	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57619152	T	T	57619152	3	4	3	1	0	0	0	0	1	0	0	0	10888	991	35	2	555	2	NXPH4	12	57619152	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	873778	57619152	76232743	520	1725											
ARHGAP9	64333	broad.mit.edu	37	chr12	57871282	57871282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggggcttccaggacttgCagccagtcagtgaatttatg	14	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57871282	A	A	57871282	3	1	3	1	0	0	0	0	1	0	0	0	891	710	25	3	1539	3	ARHGAP9	12	57871282	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	252130	57871282	75980613	521	1726											
B4GALNT1	2583	broad.mit.edu	37	chr12	58020640	58020640	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggcgtaagtctctgctcCggcatcccttgatgtccaag	11	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58020640	T	T	58020640	3	4	3	1	0	0	0	0	1	0	0	0	1271	661	23	4	116	4	B4GALNT1	12	58020640	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	149358	58020640	75831255	522	1727											
AGAP2	116986	broad.mit.edu	37	chr12	58131021	58131021	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgcggtcacgagtggatgCtcggcccccctcccggcccc	12	19	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58131021	G	G	58131021	3	3	3	1	0	0	0	0	1	0	0	0	368	797	28	4	2645	4	AGAP2	12	58131021	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	110381	58131021	75720874	523	1728											
SRGAP1	57522	broad.mit.edu	37	chr12	64485100	64485100	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaacacaggaagtccaGgccccgctcacagtataata	8	13	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64485100	T	T	64485100	3	4	3	1	0	0	0	0	1	0	0	0	15263	1000	35	2	1527	2	SRGAP1	12	64485100	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	6354079	64485100	69366795	524	1729											
TBK1	29110	broad.mit.edu	37	chr12	64895307	64895307	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtacaatattgtaaatacAtaaaaaatatacaaattttt	2	3	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64895307	T	T	64895307	1	4	3	0	1	0	0	0	0	0	0	0	15759	232	8	5		5	TBK1	12	64895307	3'UTR	SNP	A	TCGA-05-4250-01A-01D-1105-08	410207	64895307	68956588	525	1730											
MSRB3	253827	broad.mit.edu	37	chr12	65813542	65813542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggccaggcggtcttcagGctttgcatggtctccttctc	12	12	4	0	rs142168683	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65813542	T	T	65813542	1	4	3	0	1	0	0	0	0	0	0	0	9983	1218	42	3		3	MSRB3	12	65813542	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	918235	65813542	68038353	526	1731											
IRAK3	11213	broad.mit.edu	37	chr12	66628923	66628923	+	Intron	SNP	T	G	G													atcccatcctgagttgctgcTgctgctactgttgttattac							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66628923	G	G	66628923	1	3	3	0	1	0	0	0	0	0	0	0	7894	1595	55	5		5	IRAK3	12	66628923	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	815381	66628923	67222972	527	1732	2	2									
IRAK3	11213	broad.mit.edu	37	chr12	66628927	66628927	+	Intron	SNP	G	A	A													catcctgagttgctgctgctGctactgttgttattactgct							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66628927	A	A	66628927	1	1	3	0	1	0	0	0	0	0	0	0	7894	1334	46	4		4	IRAK3	12	66628927	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	4	66628927	67222968	528	1733	2	2									
KCNMB4	27345	broad.mit.edu	37	chr12	70760880	70760880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcgcacccaggggctcCccgcgagggaggtttggagg	17	15	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70760880	A	A	70760880	1	1	3	0	1	0	0	0	0	0	0	0	8147	638	22	2		2	KCNMB4	12	70760880	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4131953	70760880	63091015	529	1734											
LGR5	8549	broad.mit.edu	37	chr12	71978710	71978710	+	RNA	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtctaaatgctgctttgtAtaatttgttcagctaaggga	9	5	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71978710	G	G	71978710	1	3	3	0	1	0	0	0	0	0	0	0	8829	464	16	5		5	LGR5	12	71978710	RNA	SNP	A	TCGA-05-4250-01A-01D-1105-08	1217830	71978710	61873185	530	1735											
TRHDE	29953	broad.mit.edu	37	chr12	72667457	72667457	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgggaagccaggggtgggggGaaggaaacgaaagcggagta	21	5	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667457	A	A	72667457	1	1	3	0	1	0	0	0	0	0	0	0	16603	1189	41	4		4	TRHDE	12	72667457	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	688747	72667457	61184438	531	1736											
CAPS2	84698	broad.mit.edu	37	chr12	75784885	75784885	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgcactggcctgtcagcGgccggtggaccatggaggcc	17	13	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75784885	T	T	75784885	1	4	3	0	1	0	0	0	0	0	0	0	2664	1131	39	1		1	CAPS2	12	75784885	5'Flank	SNP	G	TCGA-05-4250-01A-01D-1105-08	3117428	75784885	58067010	532	1737											
BBS10	79738	broad.mit.edu	37	chr12	76739847	76739847	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttataaaggactttgggaaTgcctaaaagtgcattagcta	9	5	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76739847	A	A	76739847	3	1	3	1	0	0	0	0	1	0	0	0	1341	1464	51	5	257	5	BBS10	12	76739847	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	954962	76739847	57112048	533	1738											
SLC6A15	55117	broad.mit.edu	37	chr12	85255532	85255532	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttttcgataaatatttttaCcaaaatttggagatggcatc	7	5	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85255532	G	G	85255532	3	3	3	1	0	0	0	0	1	0	0	0	14792	507	18	4	124	4	SLC6A15	12	85255532	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	8515685	85255532	48596363	534	1739											
MGAT4C	25834	broad.mit.edu	37	chr12	86373286	86373286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctagggctccatgatgCaaaatatcattttgccgatc	7	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86373286	A	A	86373286	3	1	3	1	0	0	0	0	1	0	0	0	9640	709	25	3	222	3	MGAT4C	12	86373286	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1117754	86373286	47478609	535	1740											
VEZT	55591	broad.mit.edu	37	chr12	95645844	95645844	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctacaagagtcctaccAaaagtaagaacgcatgctca	6	13	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95645844	G	G	95645844	2	3	3	1	0	0	0	0	0	0	0	1	17283	117	5	5		5	VEZT	12	95645844	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	9272558	95645844	38206051	536	1741											
ELK3	2004	broad.mit.edu	37	chr12	96653545	96653545	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgactccgagtccactgCtctccagcatacatttctgg	7	14	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96653545	A	A	96653545	3	1	3	1	0	0	0	0	1	0	0	0	5102	797	28	3	1049	3	ELK3	12	96653545	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1007701	96653545	37198350	537	1742											
ANKS1B	56899	broad.mit.edu	37	chr12	99898388	99898388	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagatggtacaatttccAtagtgtaatttctcttcttt	6	7	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99898388	G	G	99898388	3	3	3	1	0	0	0	0	1	0	0	0	689	217	8	5	2798	5	ANKS1B	12	99898388	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	3244843	99898388	33953507	538	1743											
SCYL2	55681	broad.mit.edu	37	chr12	100717494	100717494	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttattgtttaataacCcttttatagattgttgatgt	5	4	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100717494	G	G	100717494	1	3	3	0	1	0	0	0	0	0	0	0	14061	638	22	4		4	SCYL2	12	100717494	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	819106	100717494	33134401	539	1744											
ANO4	121601	broad.mit.edu	37	chr12	101430689	101430689	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatattttaatttttttaGtgaatttcccagcccttgat	4	7	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101430689	C	C	101430689	1	2	3	0	1	0	0	0	0	0	0	0	699	1044	36	4		4	ANO4	12	101430689	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	713195	101430689	32421206	540	1745											
ANO4	121601	broad.mit.edu	37	chr12	101433709	101433709	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttgtgagtactacctcaCtggcagtggtgtttttatcc	9	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101433709	G	G	101433709	1	3	3	0	1	0	0	0	0	0	0	0	699	580	20	4		4	ANO4	12	101433709	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	3020	101433709	32418186	541	1746											
ANO4	121601	broad.mit.edu	37	chr12	101433907	101433907	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcacagaatgattagggcaGactgtcagctgggacaagct	13	8	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101433907	T	T	101433907	1	4	3	0	1	0	0	0	0	0	0	0	699	957	33	3		3	ANO4	12	101433907	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	198	101433907	32417988	542	1747											
ANO4	121601	broad.mit.edu	37	chr12	101462895	101462895	+	Intron	DEL	G	-	-													agaactgataaatttcaaacGgaagaaagtggcagcattta							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101462895	-	-	101462895	6	5	3	0	1	1	0	1	0	0	0	0	699	1131	39	0		0	ANO4	12	101462895	Intron	DEL	G	TCGA-05-4250-01A-01D-1105-08	28988	101462895	32389000	543	1748											
UTP20	27340	broad.mit.edu	37	chr12	101728221	101728221	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatcagcaggcttggatctGagagtcaatattctcctact	9	9	4	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101728221	C	C	101728221	3	2	3	1	0	0	0	0	1	0	0	0	17226	1291	45	4	3694	4	UTP20	12	101728221	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	265326	101728221	32123674	544	1749											
MYBPC1	4604	broad.mit.edu	37	chr12	102060674	102060674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatactcatcacatacataCacacacacacacacacacac	1	16	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102060674	A	A	102060674	1	1	3	0	1	0	0	0	0	0	0	0	10105	493	17	3		3	MYBPC1	12	102060674	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	332453	102060674	31791221	545	1750											
NT5DC3	51559	broad.mit.edu	37	chr12	104181259	104181259	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcaccaaaatacaacactCtggatcctctccatccagta	5	14	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104181259	A	A	104181259	3	1	3	1	0	0	0	0	1	0	0	0	10787	913	32	3	514	3	NT5DC3	12	104181259	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2120585	104181259	29670636	546	1751											
RIC8B	55188	broad.mit.edu	37	chr12	107209055	107209055	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagctctcttcaatgtgacGgtagacagttggaaggtgca	12	7	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107209055	C	C	107209055	2	2	3	1	0	0	0	0	0	0	0	1	13465	1103	39	4		4	RIC8B	12	107209055	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	3027796	107209055	26642840	547	1752											
WSCD2	9671	broad.mit.edu	37	chr12	108604018	108604018	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagggcgagcgaggcagcgtGtgcggcggcgccaaccgcct	18	13	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108604018	C	C	108604018	2	2	3	1	0	0	0	0	0	0	0	1	17534	1364	48	4		4	WSCD2	12	108604018	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1394963	108604018	25247877	548	1753											
ACACB	32	broad.mit.edu	37	chr12	109617933	109617933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggacttctctgccctGggtcaggggtccatgtgctg	14	13	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109617933	T	T	109617933	1	4	3	0	1	0	0	0	0	0	0	0	107	1363	47	2		2	ACACB	12	109617933	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1013915	109617933	24233962	549	1754											
TBX5	6910	broad.mit.edu	37	chr12	114837405	114837405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttttgggattaaggcccGtcaccttcactttgtaactg	9	10	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114837405	T	T	114837405	3	4	3	1	0	0	0	0	1	0	0	0	15783	1145	40	3	1372	3	TBX5	12	114837405	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	5219472	114837405	19014490	550	1755											
TBX3	6926	broad.mit.edu	37	chr12	115112623	115112623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcggcgtcgctctcacCctcgctgggacataaatcta	10	15	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115112623	T	T	115112623	3	4	3	1	0	0	0	0	1	0	0	0	15781	623	22	4	1122	4	TBX3	12	115112623	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	275218	115112623	18739272	551	1756											
CCDC60	160777	broad.mit.edu	37	chr12	119960726	119960726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctgagcaacttgaaacCatccttttgtgtttcagtga	8	9	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119960726	A	A	119960726	1	1	3	0	1	0	0	0	0	0	0	0	2859	609	21	2		2	CCDC60	12	119960726	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4848103	119960726	13891169	552	1757											
GCN1L1	10985	broad.mit.edu	37	chr12	120578934	120578934	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcccaggctttatctgaatCactgacttaacttccccaaa	4	14	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120578934	T	T	120578934	1	4	3	0	1	0	0	0	0	0	0	0	6361	841	29	4		4	GCN1L1	12	120578934	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	618208	120578934	13272961	553	1758											
NCOR2	9612	broad.mit.edu	37	chr12	124885199	124885199	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcgtcgttgtcctcccctGaggtgtcgtctgtcttctcc	9	15	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124885199	A	A	124885199	3	1	3	1	0	0	0	0	1	0	0	0	10331	1294	45	4	6039	4	NCOR2	12	124885199	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	4306265	124885199	8966696	554	1759											
POLE	5426	broad.mit.edu	37	chr12	133220712	133220712	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagtccacctctctcaaTgattacaactaaaaactctg	3	14	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133220712	C	C	133220712	1	2	3	0	1	0	0	0	0	0	0	0	12291	1479	51	5		5	POLE	12	133220712	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	8335513	133220712	631183	555	1760											
FRY	10129	broad.mit.edu	37	chr13	32698990	32698990	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacctgtatgcagaagtcAttggagtgttggcacaagcc	12	9	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32698990	C	C	32698990	3	2	3	1	0	0	0	0	1	0	0	0	6123	217	8	5	720	5	FRY	13	32698990	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08		32698990	82470888	556	1761											
SOHLH2	54937	broad.mit.edu	37	chr13	36776079	36776079	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcaccttcaagagaaccAtgttgaatatgcaatcatcc	7	10	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36776079	G	G	36776079	3	3	3	1	0	0	0	0	1	0	0	0	15038	217	8	5	1117	5	SOHLH2	13	36776079	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	4077089	36776079	78393799	557	1762											
TRPC4	7223	broad.mit.edu	37	chr13	38266167	38266167	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtaatatcatccactcgacGatggttggtggtggaccttg	13	8	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38266167	T	T	38266167	2	4	3	1	0	0	0	0	0	0	0	1	16705	1048	37	3		3	TRPC4	13	38266167	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1490088	38266167	76903711	558	1763											
KBTBD6	89890	broad.mit.edu	37	chr13	41706687	41706687	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgatggcgagaaacgctgCaggacccggctctggctcct	14	13	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41706687	A	A	41706687	1	1	3	0	1	0	0	0	0	0	0	0	8067	725	25	3		3	KBTBD6	13	41706687	5'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	3440520	41706687	73463191	559	1764											
NUFIP1	26747	broad.mit.edu	37	chr13	45563671	45563671	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagccaaccacaggctttAcgtcatttctcggcgccggg	10	15	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45563671	G	G	45563671	1	3	3	0	1	0	0	0	0	0	0	0	10843	406	14	5		5	NUFIP1	13	45563671	5'Flank	SNP	A	TCGA-05-4250-01A-01D-1105-08	3856984	45563671	69606207	560	1765											
INTS6	26512	broad.mit.edu	37	chr13	51957877	51957877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgagatgtacgaggtgGctaaaggggaaagtcttgta	16	3	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51957877	A	A	51957877	3	1	3	1	0	0	0	0	1	0	0	0	7852	1217	42	4	1812	4	INTS6	13	51957877	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	6394206	51957877	63212001	561	1766											
OLFM4	10562	broad.mit.edu	37	chr13	53624885	53624885	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctgaattatgatctttcTgtcttgcagaagccccagta	7	10	4	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53624885	A	A	53624885	2	1	3	1	0	0	0	0	0	0	0	1	10950	1567	55	5		5	OLFM4	13	53624885	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	1667008	53624885	61544993	562	1767											
DACH1	1602	broad.mit.edu	37	chr13	72440100	72440100	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctcgaagtccttcctggAgatgagtttgcagcggttca	13	9	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72440100	G	G	72440100	3	3	3	1	0	0	0	0	1	0	0	0	4253	304	11	5	1362	5	DACH1	13	72440100	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	18815215	72440100	42729778	563	1768											
DNAJC3	5611	broad.mit.edu	37	chr13	96438214	96438214	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattcaggattatgaaactgCtcaggaacacaatgaaaatg	8	6	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96438214	T	T	96438214	3	4	3	1	0	0	0	0	1	0	0	0	4687	797	28	4	1135	4	DNAJC3	13	96438214	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	23998114	96438214	18731664	564	1769											
C13orf16	121793	broad.mit.edu	37	chr13	111973266	111973266	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtgctggaagtgaagaactCtccgcggcacctcctgaagc	12	13	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111973266	A	A	111973266	3	1	3	1	0	0	0	0	1	0	0	0	1732	913	32	3	31	3	C13orf16	13	111973266	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	15535052	111973266	3196612	565	1770											
ATP11A	23250	broad.mit.edu	37	chr13	113510353	113510353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaaatctgccggagctGcagcgcggtgctctgctgcc	14	14	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113510353	T	T	113510353	3	4	3	1	0	0	0	0	1	0	0	0	1123	1319	46	3	2450	3	ATP11A	13	113510353	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1537087	113510353	1659525	566	1771											
TEP1	7011	broad.mit.edu	37	chr14	20850850	20850850	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtagagcggccggcctgattCccgcttcaccagcagcagtc	12	15	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20850850	A	A	20850850	4	1	3	1	0	0	0	0	0	1	0	0	15881	864	30	3	3923	3	TEP1	14	20850850	Nonsense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08		20850850	86498690	567	1772											
MYH7	4625	broad.mit.edu	37	chr14	23894913	23894913	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttcctcaccttggtgtgGccaaacttgtactggttgtg	10	11	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23894913	A	A	23894913	2	1	3	1	0	0	0	0	0	0	0	1	10133	1190	42	4		4	MYH7	14	23894913	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	3044063	23894913	83454627	568	1773											
MYH7	4625	broad.mit.edu	37	chr14	23901795	23901795	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctcccttccttctccctctCcctcccggcctatcccagtt	3	22	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23901795	T	T	23901795	1	4	3	0	1	0	0	0	0	0	0	0	10133	870	30	4		4	MYH7	14	23901795	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	6882	23901795	83447745	569	1774											
GZMH	2999	broad.mit.edu	37	chr14	25077022	25077022	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccaggagcagtgaagagcAgatgacagctgtggcagggt	17	8	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25077022	T	T	25077022	1	4	3	0	1	0	0	0	0	0	0	0	6982	203	7	5		5	GZMH	14	25077022	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1175227	25077022	82272518	570	1775											
ARHGAP5	394	broad.mit.edu	37	chr14	32563253	32563253	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattcgaaactcatttgtAaataacacccaaggagatga	6	7	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32563253	G	G	32563253	2	3	3	1	0	0	0	0	0	0	0	1	888	349	13	5		5	ARHGAP5	14	32563253	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	7486231	32563253	74786287	571	1776											
EGLN3	112399	broad.mit.edu	37	chr14	34419700	34419701	+	Missense_Mutation	DNP	CC	AA	AA													gaagctgatggcctcgcagcCctcctcgttgcccccgatcc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	34419701	AA	AA	34419700	3	1	3	1	0	0	0	0	1	0	0	0	5010	623	22	2	480	2	EGLN3	14	34419700	Missense_Mutation	DNP	CC	TCGA-05-4250-01A-01D-1105-08	1856447	34419700	72929840	572	1777											
BRMS1L	84312	broad.mit.edu	37	chr14	36336971	36336971	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaataaatctttttattAcattttaggtttgttattta	5	2	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36336971	G	G	36336971	1	3	3	0	1	0	0	0	0	0	0	0	1526	406	14	5		5	BRMS1L	14	36336971	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1917271	36336971	71012569	573	1778											
SLC25A21	89874	broad.mit.edu	37	chr14	37198814	37198814	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatttataacaattttccTgcaacaaactctttaattga	3	8	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37198814	A	A	37198814	1	1	3	0	1	0	0	0	0	0	0	0	14598	1595	55	5		5	SLC25A21	14	37198814	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	861843	37198814	70150726	574	1779											
MDGA2	161357	broad.mit.edu	37	chr14	47670109	47670109	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtccagagcggcctggcctCgcttggtcttgtggggcagc	16	12	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47670109	T	T	47670109	1	4	3	0	1	0	0	0	0	0	0	0	9500	899	31	4		4	MDGA2	14	47670109	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	10471295	47670109	59679431	575	1780											
SDCCAG1	9147	broad.mit.edu	37	chr14	50210531	50210531	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcactactcaggtaagcaAatttaatattttctatatat	3	6	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50210531	C	C	50210531	1	2	3	0	1	0	0	0	0	0	0	0	14070	29	1	5		5	SDCCAG1	14	50210531	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	2540422	50210531	57139009	576	1781											
WDHD1	11169	broad.mit.edu	37	chr14	55471735	55471735	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggagtagtccattcacCctgaaattcctccttggtca	8	12	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55471735	A	A	55471735	1	1	3	0	1	0	0	0	0	0	0	0	17398	638	22	2		2	WDHD1	14	55471735	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	5261204	55471735	51877805	577	1782											
DLGAP5	9787	broad.mit.edu	37	chr14	55621589	55621589	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttttcattataactaggaaTacggtgaaaatcctatcaat	5	7	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55621589	A	A	55621589	1	1	3	0	1	0	0	0	0	0	0	0	4603	1421	49	5		5	DLGAP5	14	55621589	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	149854	55621589	51727951	578	1783											
DAAM1	23002	broad.mit.edu	37	chr14	59793591	59793591	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttgtacctggggagaatGcagttagcagtggacctttt	12	6	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59793591	C	C	59793591	1	2	3	0	1	0	0	0	0	0	0	0	4248	1334	46	4		4	DAAM1	14	59793591	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	4172002	59793591	47555949	579	1784											
PRKCH	5583	broad.mit.edu	37	chr14	61924531	61924531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggcagggtcatatggaGgtattggtgacttctgccaa	13	8	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61924531	T	T	61924531	1	4	3	0	1	0	0	0	0	0	0	0	12619	1015	35	2		2	PRKCH	14	61924531	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2130940	61924531	45425009	580	1785											
KCNH5	27133	broad.mit.edu	37	chr14	63416870	63416870	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccaaccatcatcatagcCaccgaaaacatcttctccac	3	17	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63416870	G	G	63416870	2	3	3	1	0	0	0	0	0	0	0	1	8105	581	21	4		4	KCNH5	14	63416870	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	1492339	63416870	43932670	581	1786											
KIAA0247	9766	broad.mit.edu	37	chr14	70125490	70125490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttaataccattgtttctcTcgaagactaggacaggggac	9	8	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70125490	A	A	70125490	1	1	3	0	1	0	0	0	0	0	0	0	8235	1566	54	5		5	KIAA0247	14	70125490	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	6708620	70125490	37224050	582	1787											
SLC8A3	6547	broad.mit.edu	37	chr14	70634945	70634945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaagggaagggttctcCgggtaccagattggcaggat	14	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70634945	A	A	70634945	2	1	3	1	0	0	0	0	0	0	0	1	14822	639	23	1		1	SLC8A3	14	70634945	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	509455	70634945	36714595	583	1788											
PCNX	22990	broad.mit.edu	37	chr14	71542904	71542904	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttgtcttgttcatgttAgggtatcatttattatgtta	7	3	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71542904	T	T	71542904	5	4	3	1	0	0	0	0	0	0	1	0	11685	434	15	5	5215	5	PCNX	14	71542904	Splice_Site	SNP	A	TCGA-05-4250-01A-01D-1105-08	907959	71542904	35806636	584	1789											
HEATR4	399671	broad.mit.edu	37	chr14	73964837	73964837	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagtataaggtcatggtggGagccagaggtttagtgctta	15	5	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73964837	A	A	73964837	1	1	3	0	1	0	0	0	0	0	0	0	7097	1189	41	4		4	HEATR4	14	73964837	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2421933	73964837	33384703	585	1790											
YLPM1	56252	broad.mit.edu	37	chr14	75248655	75248655	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggaatacctccccctGgagttccacaagggatacct	8	15	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75248655	T	T	75248655	4	4	3	1	0	0	0	0	0	1	0	0	17613	1349	47	2	1923	2	YLPM1	14	75248655	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1283818	75248655	32100885	586	1791											
MLH3	27030	broad.mit.edu	37	chr14	75515150	75515150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttgactgcaaattaaaCatctcataggaatctaaaat	5	7	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75515150	A	A	75515150	3	1	3	1	0	0	0	0	1	0	0	0	9711	478	17	3	3200	3	MLH3	14	75515150	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	266495	75515150	31834390	587	1792											
KCNK10	54207	broad.mit.edu	37	chr14	88658611	88658611	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtggtcagagtgaccacCacaaagtaaatggactccaa	9	11	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88658611	A	A	88658611	2	1	3	1	0	0	0	0	0	0	0	1	8129	581	21	2		2	KCNK10	14	88658611	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	13143461	88658611	18690929	588	1793											
EML5	161436	broad.mit.edu	37	chr14	89087598	89087599	+	Frame_Shift_Ins	INS	-	C	C													tacaagctgcatttttctctINSccaacttcgattatttcagc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89087599	C	C	89087598	7	5	3	1	0	1	1	0	0	0	0	0	5142	1538	54	0	900	0	EML5	14	89087598	Frame_Shift_Ins	INS	-	TCGA-05-4250-01A-01D-1105-08	428987	89087598	18261942	589	1794											
SLC24A4	123041	broad.mit.edu	37	chr14	92922951	92922951	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcccccttctccgtgccGggtgagttctgggggtactg	14	13	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92922951	A	A	92922951	2	1	3	1	0	0	0	0	0	0	0	1	14582	1130	39	4		4	SLC24A4	14	92922951	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	3835353	92922951	14426589	590	1795											
SLC24A4	123041	broad.mit.edu	37	chr14	92959832	92959832	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcccaggtcctcggcatcCacctaaacaagtggcgactg	9	16	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92959832	G	G	92959832	3	3	3	1	0	0	0	0	1	0	0	0	14582	594	21	4	1744	4	SLC24A4	14	92959832	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	36881	92959832	14389708	591	1796											
KIAA1409	57578	broad.mit.edu	37	chr14	93962756	93962756	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attacattttctacattacaGtgtatcattgtcaattactg	4	7	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93962756	A	A	93962756	5	1	3	1	0	0	0	0	0	0	1	0	8300	1043	36	4	191	4	KIAA1409	14	93962756	Splice_Site	SNP	G	TCGA-05-4250-01A-01D-1105-08	1002924	93962756	13386784	592	1797											
KIAA1409	57578	broad.mit.edu	37	chr14	94041586	94041586	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgtcttgcttttaaaaatCttgaaaacccttgtcagtta	5	8	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94041586	T	T	94041586	1	4	3	0	1	0	0	0	0	0	0	0	8300	928	32	4		4	KIAA1409	14	94041586	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	78830	94041586	13307954	593	1798											
AHNAK2	113146	broad.mit.edu	37	chr14	105421237	105421253	+	Intron	DEL	AGCCAGCAGGGTAGTGA	-	-													tgctatcccctcccaggctcAgccagcagggtagtgaagcc					rs66540327		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105421253	-	-	105421237	6	5	3	0	1	1	0	1	0	0	0	0	415	203	7	0		0	AHNAK2	14	105421237	Intron	DEL	AGCCAGCAGGGTAGTGA	TCGA-05-4250-01A-01D-1105-08	11379651	105421237	1928303	594	1799											
BRF1	2972	broad.mit.edu	37	chr14	105685542	105685542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccacagctcggccttcaCgcgggcttccgactcattca	8	17	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105685542	A	A	105685542	3	1	3	1	0	0	0	0	1	0	0	0	1519	536	19	3	652	3	BRF1	14	105685542	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	264305	105685542	1663998	595	1800											
HERC2	8924	broad.mit.edu	37	chr15	28457617	28457617	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcctgtttagtcgatttcTttattttgtgcttttctaac	7	7	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28457617	C	C	28457617	3	2	3	1	0	0	0	0	1	0	0	0	7125	1609	56	5	7809	5	HERC2	15	28457617	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08		28457617	74073775	596	1801											
CHRFAM7A	89832	broad.mit.edu	37	chr15	30663125	30663125	+	Intron	DEL	C	-	-													caaacctcaaagctgaatatCcccttccccttacttgggcc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30663125	-	-	30663125	6	5	3	0	1	1	0	1	0	0	0	0	3406	870	30	0		0	CHRFAM7A	15	30663125	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	2205508	30663125	71868267	597	1802											
MTMR15	22909	broad.mit.edu	37	chr15	31222754	31222754	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgtgttcaggatcttgtCtcctgcctggggggccctgt	13	10	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31222754	T	T	31222754	2	4	3	1	0	0	0	0	0	0	0	1	10037	900	32	4		4	MTMR15	15	31222754	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	559629	31222754	71308638	598	1803											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32917842	32917842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgtaggaggtaagtgGcggtcccattttatggaggt	15	5	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32917842	T	T	32917842	1	4	3	0	1	0	0	0	0	0	0	0	865	1218	42	3		3	ARHGAP11A	15	32917842	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1695088	32917842	69613550	599	1804											
FMN1	342184	broad.mit.edu	37	chr15	33357125	33357125	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agccattgcaggaagagattCattcccgggtccctagcttc	10	12	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33357125	A	A	33357125	1	1	3	0	1	0	0	0	0	0	0	0	6007	841	29	3		3	FMN1	15	33357125	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	439283	33357125	69174267	600	1805											
RYR3	6263	broad.mit.edu	37	chr15	34102736	34102736	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggcggggagacttgtattcCatccagacctccctcatcgt	10	14	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34102736	G	G	34102736	2	3	3	1	0	0	0	0	0	0	0	1	13881	581	21	4		4	RYR3	15	34102736	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	745611	34102736	68428656	601	1806											
RYR3	6263	broad.mit.edu	37	chr15	34117912	34117912	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgtgaaggccattctcttCctgattaaaatctttttttt	5	7	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34117912	A	A	34117912	1	1	3	0	1	0	0	0	0	0	0	0	13881	870	30	3		3	RYR3	15	34117912	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	15176	34117912	68413480	602	1807											
C15orf55	256646	broad.mit.edu	37	chr15	34648156	34648156	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacttcagaggctctgccCctttgttggcagggaggctt	14	10	2	1	rs141659118	byFrequency;by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648156	A	A	34648156	2	1	3	1	0	0	0	0	0	0	0	1	1816	610	22	2		2	C15orf55	15	34648156	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	530244	34648156	67883236	603	1808											
ATPBD4	89978	broad.mit.edu	37	chr15	35746951	35746951	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattaatgttttcttacacaTtttccactcgaatacgctga	4	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35746951	A	A	35746951	3	1	3	1	0	0	0	0	1	0	0	0	1206	1493	52	5	444	5	ATPBD4	15	35746951	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	1098795	35746951	66784441	604	1809											
ZFP106	64397	broad.mit.edu	37	chr15	42729559	42729559	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggttcatcatcatctccTggctctgaagatatttctgg	10	9	6	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42729559	G	G	42729559	2	3	3	1	0	0	0	0	0	0	0	1	17763	1567	55	5		5	ZFP106	15	42729559	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	6982608	42729559	59801833	605	1810											
SLC28A2	9153	broad.mit.edu	37	chr15	45545435	45545435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaagcaagtggaagaCagtccattgctctgtccaca	11	9	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45545435	A	A	45545435	3	1	3	1	0	0	0	0	1	0	0	0	14646	479	17	3	24	3	SLC28A2	15	45545435	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2815876	45545435	56985957	606	1811											
SCG3	29106	broad.mit.edu	37	chr15	52011673	52011673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatgtggagaaaggcatcCttgacaaggaagaagccgag	13	7	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52011673	A	A	52011673	3	1	3	1	0	0	0	0	1	0	0	0	14004	681	24	2	1403	2	SCG3	15	52011673	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	6466238	52011673	50519719	607	1812											
UNC13C	440279	broad.mit.edu	37	chr15	54786899	54786899	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatatgtgcgtgaacttcCtgccttcaaggatgctgttc	10	9	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54786899	T	T	54786899	3	4	3	1	0	0	0	0	1	0	0	0	17112	681	24	4	5097	4	UNC13C	15	54786899	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2775226	54786899	47744493	608	1813											
RPL4	6124	broad.mit.edu	37	chr15	66797176	66797176	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagcccggctgctgccaCaggaaaaggaagtgcttacc	11	13	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66797176	A	A	66797176	1	1	3	0	1	0	0	0	0	0	0	0	13706	493	17	3		3	RPL4	15	66797176	5'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	12010277	66797176	35734216	609	1814											
LBXCOR1	390598	broad.mit.edu	37	chr15	68119430	68119430	+	Frame_Shift_Del	DEL	G	-	-													gcgcgggcgagccaaagggcGgtcctggcactgggagcggc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68119430	-	-	68119430	7	5	3	1	0	1	0	1	0	0	0	0	8727	1116	39	0	1142	0	LBXCOR1	15	68119430	Frame_Shift_Del	DEL	G	TCGA-05-4250-01A-01D-1105-08	1322254	68119430	34411962	610	1815											
TBC1D21	161514	broad.mit.edu	37	chr15	74181384	74181384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacagaccaatgtctgtGcacctcccacctgcctcctc	8	17	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74181384	T	T	74181384	1	4	3	0	1	0	0	0	0	0	0	0	15729	1334	46	3		3	TBC1D21	15	74181384	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	6061954	74181384	28350008	611	1816											
CCDC33	80125	broad.mit.edu	37	chr15	74623141	74623141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggagctatggtgggggaGcatcggggtgagaagagtct	21	4	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74623141	T	T	74623141	1	4	3	0	1	0	0	0	0	0	0	0	2833	986	34	3		3	CCDC33	15	74623141	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	441757	74623141	27908251	612	1817											
SCAPER	49855	broad.mit.edu	37	chr15	76994155	76994155	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtattctctctcacggcttGctggtgttttctccctttaa	8	11	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76994155	A	A	76994155	4	1	3	1	0	0	0	0	0	1	0	0	13990	1328	46	4	1802	4	SCAPER	15	76994155	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2371014	76994155	25537237	613	1818											
CRABP1	1381	broad.mit.edu	37	chr15	78635905	78635905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcttcttgaaggggacgGccccaaaacctactggaccc	9	14	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78635905	T	T	78635905	3	4	3	1	0	0	0	0	1	0	0	0	3875	1203	42	3	324	3	CRABP1	15	78635905	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1641750	78635905	23895487	614	1819											
CHRNB4	1143	broad.mit.edu	37	chr15	78921765	78921765	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatgaggtacttgccgatGagaggcacatcgagggaggt	15	7	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78921765	A	A	78921765	2	1	3	1	0	0	0	0	0	0	0	1	3424	1277	45	4		4	CHRNB4	15	78921765	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	285860	78921765	23609627	615	1820											
CHRNB4	1143	broad.mit.edu	37	chr15	78921903	78921903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagacgaggatggccagCaaggtggtgagcacgcaggg	18	7	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78921903	A	A	78921903	3	1	3	1	0	0	0	0	1	0	0	0	3424	709	25	3	760	3	CHRNB4	15	78921903	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	138	78921903	23609489	616	1821											
EFTUD1	79631	broad.mit.edu	37	chr15	82512058	82512058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttctttcctcttcgagCcacaccactgaacacccgag	5	15	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82512058	A	A	82512058	3	1	3	1	0	0	0	0	1	0	0	0	5000	739	26	3	1844	3	EFTUD1	15	82512058	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	3590155	82512058	20019334	617	1822											
ZNF592	9640	broad.mit.edu	37	chr15	85342529	85342529	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttttctgtgctgcaagatCaggtgtctaagacaagagac	11	8	3	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85342529	T	T	85342529	1	4	3	0	1	0	0	0	0	0	0	0	18149	841	29	4		4	ZNF592	15	85342529	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2830471	85342529	17188863	618	1823											
ALPK3	57538	broad.mit.edu	37	chr15	85400144	85400144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatggaaggtcagtctgaGcaagaggtggcaaccagcct	14	10	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85400144	T	T	85400144	3	4	3	1	0	0	0	0	1	0	0	0	546	962	34	3	2803	3	ALPK3	15	85400144	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	57615	85400144	17131248	619	1824											
AGBL1	123624	broad.mit.edu	37	chr15	86801146	86801146	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatctaaatcctaaatcCcgggcaaaggggaaacttca	8	9	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86801146	G	G	86801146	1	3	3	0	1	0	0	0	0	0	0	0	375	638	22	4		4	AGBL1	15	86801146	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1401002	86801146	15730246	620	1825											
AGBL1	123624	broad.mit.edu	37	chr15	86823106	86823106	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccctgacatcctgatGgggtgcagaggggaatgtag	17	7	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86823106	A	A	86823106	1	1	3	0	1	0	0	0	0	0	0	0	375	1363	47	4		4	AGBL1	15	86823106	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	21960	86823106	15708286	621	1826											
NTRK3	4916	broad.mit.edu	37	chr15	88678594	88678594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagtgctccaggcgcagCtcaggctcctccaggctcac	11	16	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88678594	A	A	88678594	3	1	3	1	0	0	0	0	1	0	0	0	10803	796	28	3	1883	3	NTRK3	15	88678594	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1855488	88678594	13852798	622	1827											
BLM	641	broad.mit.edu	37	chr15	91341467	91341468	+	Frame_Shift_Ins	INS	-	TT	TT													atgtgaaaagtattgtaagaINStttgttcaagaacatagttc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	91341468	TT	TT	91341467	7	5	3	1	0	1	1	0	0	0	0	0	1451	330	12	0	3320	0	BLM	15	91341467	Frame_Shift_Ins	INS	-	TCGA-05-4250-01A-01D-1105-08	2662873	91341467	11189925	623	1828											
PRC1	9055	broad.mit.edu	37	chr15	91512930	91512930	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacaatacctgcactggtCaaaggctgagactatcttta	7	11	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91512930	T	T	91512930	1	4	3	0	1	0	0	0	0	0	0	0	12552	841	29	4		4	PRC1	15	91512930	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	171463	91512930	11018462	624	1829											
PRC1	9055	broad.mit.edu	37	chr15	91517756	91517756	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtccccggcagagactaTgggctgctcagattactttc	11	12	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91517756	A	A	91517756	1	1	3	0	1	0	0	0	0	0	0	0	12552	1479	51	5		5	PRC1	15	91517756	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	4826	91517756	11013636	625	1830											
LUC7L	55692	broad.mit.edu	37	chr16	239065	239065	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaactctgtacacttctaGaaactcacagctagctccaa	5	13	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239065	A	A	239065	1	1	3	0	1	0	0	0	0	0	0	0	9169	957	33	4		4	LUC7L	16	239065	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08		239065	90115688	626	1831											
SOLH	6650	broad.mit.edu	37	chr16	600778	600779	+	Intron	INS	-	C	C													ggtcccctgccggtgagggtINScccggtcggtgagggtcccg					rs146137561	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	600779	C	C	600778	6	5	3	0	1	1	1	0	0	0	0	0	15039	1682	58	0		0	SOLH	16	600778	Intron	INS	-	TCGA-05-4250-01A-01D-1105-08	361713	600778	89753975	627	1832											
MLST8	64223	broad.mit.edu	37	chr16	2258703	2258703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcttcccctctgctgGggccgcctgcttggcctgca	12	17	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2258703	T	T	2258703	1	4	3	0	1	0	0	0	0	0	0	0	9727	1247	43	2		2	MLST8	16	2258703	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1657925	2258703	88096050	628	1833											
ABCA3	21	broad.mit.edu	37	chr16	2376381	2376381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcctctgggctaggcaCgcagctgacctccctccaga	12	15	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2376381	A	A	2376381	1	1	3	0	1	0	0	0	0	0	0	0	33	551	19	3		3	ABCA3	16	2376381	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	117678	2376381	87978372	629	1834											
ZNF434	54925	broad.mit.edu	37	chr16	3434572	3434572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgccatcttctacctccGtgggttccccattctggtga	9	14	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3434572	T	T	3434572	3	4	3	1	0	0	0	0	1	0	0	0	18035	1145	40	3	980	3	ZNF434	16	3434572	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1058191	3434572	86920181	630	1835											
CREBBP	1387	broad.mit.edu	37	chr16	3900576	3900576	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttagcattcatgcagatacCaggtccagtctgtgacgtgg	12	9	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3900576	G	G	3900576	3	3	3	1	0	0	0	0	1	0	0	0	3893	594	21	4	6928	4	CREBBP	16	3900576	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	466004	3900576	86454177	631	1836											
TEKT5	146279	broad.mit.edu	37	chr16	10776156	10776156	+	Intron	DEL	C	-	-													ccaccacatacccagaggctCcccccaatccaaacagattt							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10776156	-	-	10776156	6	5	3	0	1	1	0	1	0	0	0	0	15878	870	30	0		0	TEKT5	16	10776156	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	6875580	10776156	79578597	632	1837											
DNAH3	55567	broad.mit.edu	37	chr16	20944578	20944578	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacatagttggtagagtgGcctgtggtggagagggttcc	18	5	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20944578	A	A	20944578	2	1	3	1	0	0	0	0	0	0	0	1	4643	1190	42	4		4	DNAH3	16	20944578	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	10168422	20944578	69410175	633	1838											
CHP2	63928	broad.mit.edu	37	chr16	23766505	23766505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtctggggctagggaagGggttgggttgaaggatggac	22	4	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23766505	T	T	23766505	1	4	3	0	1	0	0	0	0	0	0	0	3398	1247	43	2		2	CHP2	16	23766505	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2821927	23766505	66588248	634	1839											
PRKCB	5579	broad.mit.edu	37	chr16	24225901	24225901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagcacacccaattatgCtaggttctgttttattttgg	8	7	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24225901	A	A	24225901	1	1	3	0	1	0	0	0	0	0	0	0	12614	812	28	3		3	PRKCB	16	24225901	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	459396	24225901	66128852	635	1840											
SRCAP	10847	broad.mit.edu	37	chr16	30733731	30733731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtgggtggggccaacgGgcatggttggagggatcttg	20	5	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30733731	T	T	30733731	1	4	3	0	1	0	0	0	0	0	0	0	15253	1247	43	2		2	SRCAP	16	30733731	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	6507830	30733731	59621022	636	1841											
SETD1A	9739	broad.mit.edu	37	chr16	30974843	30974843	+	Nonsense_Mutation	SNP	A	T	T													ggggcaaggccctgagtgagAagttccaaggctcgggtgca							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30974843	T	T	30974843	4	4	3	1	0	0	0	0	0	1	0	0	14243	247	9	5	621	5	SETD1A	16	30974843	Nonsense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	241112	30974843	59379910	637	1842	3	2									
SETD1A	9739	broad.mit.edu	37	chr16	30974845	30974845	+	Missense_Mutation	SNP	G	T	T													ggcaaggccctgagtgagaaGttccaaggctcgggtgcagc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30974845	T	T	30974845	3	4	3	1	0	0	0	0	1	0	0	0	14243	1020	36	3	623	3	SETD1A	16	30974845	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	2	30974845	59379908	638	1843	3	2									
ITGAM	3684	broad.mit.edu	37	chr16	31336931	31336931	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaccaccccatcttcccGgaaaactcagaggtcagaac	6	14	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31336931	T	T	31336931	2	4	3	1	0	0	0	0	0	0	0	1	7957	1103	39	1		1	ITGAM	16	31336931	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	362086	31336931	59017822	639	1844											
ITGAX	3687	broad.mit.edu	37	chr16	31391695	31391695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcagctttggctgggtcCgccaggtgtgtgggtgcaac	15	11	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31391695	A	A	31391695	3	1	3	1	0	0	0	0	1	0	0	0	7959	652	23	1	3275	1	ITGAX	16	31391695	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	54764	31391695	58963058	640	1845											
NOD2	64127	broad.mit.edu	37	chr16	50753627	50753627	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgctgtgcaaacagcgtcCcgctgcccctttccctttgc	8	17	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50753627	T	T	50753627	1	4	3	0	1	0	0	0	0	0	0	0	10612	638	22	4		4	NOD2	16	50753627	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	19361932	50753627	39601126	641	1846											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53675021	53675021	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacgttgtcttggtttaggtCttggtgcctaagacaaacca	10	8	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53675021	T	T	53675021	3	4	3	1	0	0	0	0	1	0	0	0	13661	913	32	4	1101	4	RPGRIP1L	16	53675021	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2921394	53675021	36679732	642	1847											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53686548	53686548	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catattctgtgctataagccTggtggacctcaagggtgata	11	8	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53686548	C	C	53686548	3	2	3	1	0	0	0	0	1	0	0	0	13661	1580	55	5	1948	5	RPGRIP1L	16	53686548	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	11527	53686548	36668205	643	1848											
CDH11	1009	broad.mit.edu	37	chr16	65022079	65022079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttttcagctttatcaccCcctcctgtgtttcatagtcc	4	15	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65022079	A	A	65022079	3	1	3	1	0	0	0	0	1	0	0	0	3127	623	22	2	1438	2	CDH11	16	65022079	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	11335531	65022079	25332674	644	1849											
PLEKHG4	25894	broad.mit.edu	37	chr16	67319226	67319226	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagagatggtggccacGgagcgggagtatgtccgggc	19	9	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67319226	T	T	67319226	2	4	3	1	0	0	0	0	0	0	0	1	12166	1103	39	1		1	PLEKHG4	16	67319226	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	2297147	67319226	23035527	645	1850											
CDH3	1001	broad.mit.edu	37	chr16	68714851	68714851	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attaaactcacaatgggcttCccctctcctttctccccaga	4	16	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68714851	G	G	68714851	1	3	3	0	1	0	0	0	0	0	0	0	3141	870	30	4		4	CDH3	16	68714851	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1395625	68714851	21639902	646	1851											
HYDIN	54768	broad.mit.edu	37	chr16	70993478	70993478	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acacagctgatgttgccactCtggaagccgcagagtttaca	10	11	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70993478	G	G	70993478	1	3	3	0	1	0	0	0	0	0	0	0	7537	928	32	4		4	HYDIN	16	70993478	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2278627	70993478	19361275	647	1852											
DYNLRB2	83657	broad.mit.edu	37	chr16	80577307	80577307	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccaggaacctgtttgcCgtgttagtccttaagacaaa	8	11	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80577307	T	T	80577307	1	4	3	0	1	0	0	0	0	0	0	0	4891	667	23	4		4	DYNLRB2	16	80577307	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	9583829	80577307	9777446	648	1853											
PKD1L2	114780	broad.mit.edu	37	chr16	81187865	81187865	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggacgtggctgcccctcGtcggtgtcctgtgtagactg	15	11	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81187865	T	T	81187865	2	4	3	1	0	0	0	0	0	0	0	1	12060	1153	40	3		3	PKD1L2	16	81187865	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	610558	81187865	9166888	649	1854											
PKD1L2	114780	broad.mit.edu	37	chr16	81219212	81219212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacagcagagtcaggcgGcggcaggcaggatgctggaa	19	8	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81219212	T	T	81219212	3	4	3	1	0	0	0	0	1	0	0	0	12060	1203	42	3	5698	3	PKD1L2	16	81219212	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	31347	81219212	9135541	650	1855											
SGSM2	9905	broad.mit.edu	37	chr17	2246985	2246985	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggcctggggccaggaaaaGatgagtcctcaggtgcagta	15	9	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2246985	C	C	2246985	1	2	3	0	1	0	0	0	0	0	0	0	14336	957	33	4		4	SGSM2	17	2246985	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08		2246985	78948225	651	1856											
SHPK	23729	broad.mit.edu	37	chr17	3527580	3527580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaaatgactaggcatggCgcggccttgatactactctg	12	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3527580	A	A	3527580	1	1	3	0	1	0	0	0	0	0	0	0	14403	783	27	3		3	SHPK	17	3527580	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1280595	3527580	77667630	652	1857											
P2RX5	5026	broad.mit.edu	37	chr17	3593191	3593191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcacacacacaaacgcaCgcacacatgcacacagacac	5	18	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3593191	A	A	3593191	1	1	3	0	1	0	0	0	0	0	0	0	11437	551	19	3		3	P2RX5	17	3593191	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	65611	3593191	77602019	653	1858											
ZZEF1	23140	broad.mit.edu	37	chr17	3981186	3981186	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaactcacatttttcaaTaaggtccacggcaagatctt	6	9	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3981186	C	C	3981186	3	2	3	1	0	0	0	0	1	0	0	0	18384	1406	49	5	6053	5	ZZEF1	17	3981186	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	387995	3981186	77214024	654	1859											
UBE2G1	7326	broad.mit.edu	37	chr17	4192814	4192814	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctttatcaaacatgacaCatacgcagaagttaatgtcc	5	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4192814	T	T	4192814	1	4	3	0	1	0	0	0	0	0	0	0	16982	493	17	4		4	UBE2G1	17	4192814	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	211628	4192814	77002396	655	1860											
ALOX15	246	broad.mit.edu	37	chr17	4539076	4539076	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagataggatgtatcgacGgcaggcacctcatggtggcc	14	9	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4539076	A	A	4539076	3	1	3	1	0	0	0	0	1	0	0	0	538	1116	39	4	877	4	ALOX15	17	4539076	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	346262	4539076	76656134	656	1861											
PER1	5187	broad.mit.edu	37	chr17	8048275	8048275	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctgggggctgggcctGgggctaggccaggcaggtcc	21	11	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8048275	C	C	8048275	3	2	3	1	0	0	0	0	1	0	0	0	11823	1348	47	4	1641	4	PER1	17	8048275	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3509199	8048275	73146935	657	1862											
GLP2R	9340	broad.mit.edu	37	chr17	9760757	9760757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaactccactgcacgcGcaactacatccacatgaact	5	15	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9760757	T	T	9760757	3	4	3	1	0	0	0	0	1	0	0	0	6517	1087	38	3	651	3	GLP2R	17	9760757	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1712482	9760757	71434453	658	1863											
KIAA0100	9703	broad.mit.edu	37	chr17	26942855	26942855	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaaagaaaaaaagaggggTggggaatacatcagctgcca	15	5	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26942855	G	G	26942855	1	3	3	0	1	0	0	0	0	0	0	0	8224	1711	59	5		5	KIAA0100	17	26942855	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	17182098	26942855	54252355	659	1864											
RAB34	83871	broad.mit.edu	37	chr17	27041896	27041896	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcagtgctgccacacggaaGaagaattctcggacattctc	10	11	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27041896	C	C	27041896	3	2	3	1	0	0	0	0	1	0	0	0	13032	933	33	4	224	4	RAB34	17	27041896	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	99041	27041896	54153314	660	1865											
SEZ6	124925	broad.mit.edu	37	chr17	27297074	27297074	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccccgggcagatcaatcctCaatgctacttgagcatcgga	10	13	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27297074	G	G	27297074	1	3	3	0	1	0	0	0	0	0	0	0	14255	841	29	4		4	SEZ6	17	27297074	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	255178	27297074	53898136	661	1866											
UNC45B	146862	broad.mit.edu	37	chr17	33510402	33510402	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccctcttcaggctgggcaGattggggacagttttctctg	12	10	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33510402	A	A	33510402	1	1	3	0	1	0	0	0	0	0	0	0	17115	957	33	4		4	UNC45B	17	33510402	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	6213328	33510402	47684808	662	1867											
DDX52	11056	broad.mit.edu	37	chr17	35993383	35993383	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctctctgaacttttttgtCttcaatctttgcttctacag	4	10	6	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35993383	G	G	35993383	3	3	3	1	0	0	0	0	1	0	0	0	4403	913	32	4	1499	4	DDX52	17	35993383	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	2482981	35993383	45201827	663	1868											
CWC25	54883	broad.mit.edu	37	chr17	36965933	36965933	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtcccacagtcactcctTtcaagaagcccacatcccta	4	17	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36965933	G	G	36965933	1	3	3	0	1	0	0	0	0	0	0	0	4102	1856	64	5		5	CWC25	17	36965933	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	972550	36965933	44229277	664	1869											
TOP2A	7153	broad.mit.edu	37	chr17	38564376	38564376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagtggagtttcggcccCctaaaataaaaatatacata	6	9	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38564376	A	A	38564376	3	1	3	1	0	0	0	0	1	0	0	0	16489	637	22	2	3348	2	TOP2A	17	38564376	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1598443	38564376	42630834	665	1870											
KRT33B	3884	broad.mit.edu	37	chr17	39521771	39521771	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtccacctccacgttgaggCggtctccaagctggcagcgc	12	16	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39521771	T	T	39521771	3	4	3	1	0	0	0	0	1	0	0	0	8541	768	27	4	607	4	KRT33B	17	39521771	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	957395	39521771	41673439	666	1871											
KRT35	3886	broad.mit.edu	37	chr17	39633999	39633999	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcatctctctgtgaggGcaagagttgtgtagggagga	15	6	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39633999	T	T	39633999	1	4	3	0	1	0	0	0	0	0	0	0	8543	1218	42	3		3	KRT35	17	39633999	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	112228	39633999	41561211	667	1872											
DHX58	79132	broad.mit.edu	37	chr17	40256702	40256702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagaggggacagggggacGtatgtgtgcagtcagaaacc	17	6	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40256702	T	T	40256702	1	4	3	0	1	0	0	0	0	0	0	0	4554	1160	40	3		3	DHX58	17	40256702	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	622703	40256702	40938508	668	1873											
TUBG1	7283	broad.mit.edu	37	chr17	40764085	40764085	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actctgaccctcccctatgtCtgtacagggagaaaagatcc	8	13	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40764085	G	G	40764085	1	3	3	0	1	0	0	0	0	0	0	0	16890	928	32	4		4	TUBG1	17	40764085	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	507383	40764085	40431125	669	1874											
CNTNAP1	8506	broad.mit.edu	37	chr17	40849561	40849564	+	Intron	DEL	CTCT	-	-													gtccctctttctgggcctgcCtctctctcagagacaggagt							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40849564	-	-	40849561	6	5	3	0	1	1	0	1	0	0	0	0	3678	696	24	0		0	CNTNAP1	17	40849561	Intron	DEL	CTCT	TCGA-05-4250-01A-01D-1105-08	85476	40849561	40345649	670	1875											
LSM12	124801	broad.mit.edu	37	chr17	42114658	42114658	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggaaggcagggaggccaGacagggcctctgctgctaga	17	10	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42114658	C	C	42114658	1	2	3	0	1	0	0	0	0	0	0	0	9140	957	33	4		4	LSM12	17	42114658	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1265097	42114658	39080552	671	1876											
KIF18B	146909	broad.mit.edu	37	chr17	43005458	43005458	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtcccagccaatgcattCatggaaactgggctttgagg	11	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43005458	A	A	43005458	4	1	3	1	0	0	0	0	0	1	0	0	8351	835	29	3	361	3	KIF18B	17	43005458	Nonsense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	890800	43005458	38189752	672	1877											
MAP3K14	9020	broad.mit.edu	37	chr17	43347745	43347746	+	Intron	INS	-	C	C													ctgtccacctctgtcttctgINSccccccgggtcagccagcgt							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43347746	C	C	43347745	6	5	3	0	1	1	1	0	0	0	0	0	9340	1334	46	0		0	MAP3K14	17	43347745	Intron	INS	-	TCGA-05-4250-01A-01D-1105-08	342287	43347745	37847465	673	1878											
CALCOCO2	10241	broad.mit.edu	37	chr17	46930139	46930139	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagctatctgaaatgagatAgctcatggctttcttcagaa	9	7	4	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46930139	T	T	46930139	1	4	3	0	1	0	0	0	0	0	0	0	2604	435	15	5		5	CALCOCO2	17	46930139	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	3582394	46930139	34265071	674	1879											
COL1A1	1277	broad.mit.edu	37	chr17	48275260	48275260	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgggagttcttctataggaGagtctgtgtgtttgtagaag	14	4	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48275260	A	A	48275260	1	1	3	0	1	0	0	0	0	0	0	0	3709	957	33	4		4	COL1A1	17	48275260	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1345121	48275260	32919950	675	1880											
MPO	4353	broad.mit.edu	37	chr17	56356600	56356600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacacggagatcagctggCgcctgggtccgcgcaccgcg	17	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56356600	A	A	56356600	1	1	3	0	1	0	0	0	0	0	0	0	9826	783	27	3		3	MPO	17	56356600	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	8081340	56356600	24838610	676	1881											
BZRAP1	9256	broad.mit.edu	37	chr17	56403172	56403172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagttagcatgaaaacctAggggggtagccacctgcttc	13	9	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56403172	G	G	56403172	1	3	3	0	1	0	0	0	0	0	0	0	1587	435	15	5		5	BZRAP1	17	56403172	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	46572	56403172	24792038	677	1882											
TEX14	56155	broad.mit.edu	37	chr17	56679776	56679776	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgcctttaagtcattcttCagaatataccggatatcttg	6	9	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56679776	G	G	56679776	2	3	3	1	0	0	0	0	0	0	0	1	15900	813	29	4		4	TEX14	17	56679776	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	276604	56679776	24515434	678	1883											
MED13	9969	broad.mit.edu	37	chr17	60028436	60028436	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataaacacagaatggctcaTagcaatcagtctcattatct	5	9	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60028436	C	C	60028436	1	2	3	0	1	0	0	0	0	0	0	0	9523	1421	49	5		5	MED13	17	60028436	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	3348660	60028436	21166774	679	1884											
MED13	9969	broad.mit.edu	37	chr17	60060325	60060325	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtccgaggagtccttggagtCcttggagttggaaaccgagg	16	8	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60060325	G	G	60060325	3	3	3	1	0	0	0	0	1	0	0	0	9523	854	30	4	3545	4	MED13	17	60060325	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	31889	60060325	21134885	680	1885											
MRC2	9902	broad.mit.edu	37	chr17	60767430	60767430	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggttagcagtggtgagtGcccacctgccagggcggggg	20	9	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60767430	T	T	60767430	1	4	3	0	1	0	0	0	0	0	0	0	9852	1334	46	3		3	MRC2	17	60767430	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	707105	60767430	20427780	681	1886											
TANC2	26115	broad.mit.edu	37	chr17	61492904	61492904	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attagaaaggtaaagtaaagGaagctgcccagcgctaccag	11	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61492904	A	A	61492904	3	1	3	1	0	0	0	0	1	0	0	0	15664	1175	41	4	3874	4	TANC2	17	61492904	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	725474	61492904	19702306	682	1887											
C17orf60	284021	broad.mit.edu	37	chr17	62461564	62461564	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgattcctacctatttaCgtaggaaaagctatgagaaa	8	6	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62461564	T	T	62461564	1	4	3	0	1	0	0	0	0	0	0	0	1884	551	19	4		4	C17orf60	17	62461564	5'Flank	SNP	C	TCGA-05-4250-01A-01D-1105-08	968660	62461564	18733646	683	1888											
AXIN2	8313	broad.mit.edu	37	chr17	63554793	63554793	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcttcttccagttcctctCagcaatcggcgtggtctctc	7	14	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63554793	T	T	63554793	1	4	3	0	1	0	0	0	0	0	0	0	1242	841	29	4		4	AXIN2	17	63554793	5'UTR	SNP	C	TCGA-05-4250-01A-01D-1105-08	1093229	63554793	17640417	684	1889											
ARSG	22901	broad.mit.edu	37	chr17	66352735	66352735	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatgtgcatatgcattgttGcattaaagcatttagttctg	8	5	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66352735	C	C	66352735	1	2	3	0	1	0	0	0	0	0	0	0	996	1334	46	4		4	ARSG	17	66352735	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2797942	66352735	14842475	685	1890											
ABCA8	10351	broad.mit.edu	37	chr17	66918397	66918397	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttacctttcaaggcttctAttttatcaggctttccttta	4	9	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66918397	G	G	66918397	3	3	3	1	0	0	0	0	1	0	0	0	38	449	16	5	3370	5	ABCA8	17	66918397	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	565662	66918397	14276813	686	1891											
KIF19	124602	broad.mit.edu	37	chr17	72345451	72345452	+	Missense_Mutation	DNP	GG	TT	TT													actgggcggggccaggcccgGggccggcaggatcggggtga							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	72345452	TT	TT	72345451	3	4	3	1	0	0	0	0	1	0	0	0	8352	1219	43	2	1214	2	KIF19	17	72345451	Missense_Mutation	DNP	GG	TCGA-05-4250-01A-01D-1105-08	5427054	72345451	8849759	687	1892											
CD300LB	124599	broad.mit.edu	37	chr17	72522108	72522108	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcccagcgcacccctcggCaccaccacttaatgtaggtc	7	17	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72522108	T	T	72522108	3	4	3	1	0	0	0	0	1	0	0	0	3029	710	25	4	468	4	CD300LB	17	72522108	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	176657	72522108	8673102	688	1893											
USH1G	124590	broad.mit.edu	37	chr17	72915586	72915586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccggcgggcgctccatcgCctgccgccgcctcctcacgg	14	20	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72915586	A	A	72915586	3	1	3	1	0	0	0	0	1	0	0	0	17161	739	26	3	48	3	USH1G	17	72915586	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	393478	72915586	8279624	689	1894											
CASKIN2	57513	broad.mit.edu	37	chr17	73498744	73498744	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccccctctgtggggccaGggcggcttaggctgtgggac	16	13	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73498744	A	A	73498744	3	1	3	1	0	0	0	0	1	0	0	0	2693	1000	35	4	1209	4	CASKIN2	17	73498744	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	583158	73498744	7696466	690	1895											
ITGB4	3691	broad.mit.edu	37	chr17	73746102	73746102	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagttgaatgcgctgggtaGagcgccctgggtgttgaagt	17	6	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73746102	C	C	73746102	1	2	3	0	1	0	0	0	0	0	0	0	7967	957	33	4		4	ITGB4	17	73746102	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	247358	73746102	7449108	691	1896											
CARD14	79092	broad.mit.edu	37	chr17	78162253	78162253	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaattgcaagagcagtccctGaggacagccagcgaccagga	13	11	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78162253	C	C	78162253	2	2	3	1	0	0	0	0	0	0	0	1	2672	1277	45	4		4	CARD14	17	78162253	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	4416151	78162253	3032957	692	1897											
AZI1	22994	broad.mit.edu	37	chr17	79166471	79166471	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaggtcagcgggtgagggGgcgggggggaggggtcagcc	26	6	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79166471	A	A	79166471	1	1	3	0	1	0	0	0	0	0	0	0	1245	1247	43	4		4	AZI1	17	79166471	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1004218	79166471	2028739	693	1898											
SLC38A10	124565	broad.mit.edu	37	chr17	79219674	79219674	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccagctctggctctggcctCtgcctgggctcctggacagc	12	17	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79219674	T	T	79219674	2	4	3	1	0	0	0	0	0	0	0	1	14716	912	32	4		4	SLC38A10	17	79219674	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	53203	79219674	1975536	694	1899											
SLC38A10	124565	broad.mit.edu	37	chr17	79249934	79249934	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcctcggtgaagctgacGtagccgaaaaaccccacctg	12	13	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79249934	T	T	79249934	4	4	3	1	0	0	0	0	0	1	0	0	14716	1140	40	3	2926	3	SLC38A10	17	79249934	Nonsense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	30260	79249934	1945276	695	1900											
MC5R	4161	broad.mit.edu	37	chr18	13825793	13825793	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatttcacctgcatttctTggatctcaacctgaatgcca	5	13	4	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13825793	C	C	13825793	3	2	3	1	0	0	0	0	1	0	0	0	9460	1821	63	5	31	5	MC5R	18	13825793	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08		13825793	64251455	696	1901											
CTAGE1	64693	broad.mit.edu	37	chr18	19997171	19997171	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcactcacttgttctttccAtacttcagcttcttgcaaaa	3	12	5	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19997171	G	G	19997171	3	3	3	1	0	0	0	0	1	0	0	0	4026	217	8	5	1637	5	CTAGE1	18	19997171	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	6171378	19997171	58080077	697	1902											
C18orf34	374864	broad.mit.edu	37	chr18	30806766	30806766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagtattacctgaagcacCattccagcagccacttcacc	5	15	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30806766	A	A	30806766	3	1	3	1	0	0	0	0	1	0	0	0	1920	594	21	2	988	2	C18orf34	18	30806766	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	10809595	30806766	47270482	698	1903											
ASXL3	80816	broad.mit.edu	37	chr18	31323007	31323007	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgggcccaacaagctcgGgcccagcgagaggctgctgc	15	16	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323007	T	T	31323007	2	4	3	1	0	0	0	0	0	0	0	1	1072	1219	43	2		2	ASXL3	18	31323007	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	516241	31323007	46754241	699	1904											
RNF165	494470	broad.mit.edu	37	chr18	44036010	44036010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgagaaatgcacaatttGtctgtctatgctggaagatg	11	5	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44036010	T	T	44036010	3	4	3	1	0	0	0	0	1	0	0	0	13567	1377	48	3	916	3	RNF165	18	44036010	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	12713003	44036010	34041238	700	1905											
FECH	2235	broad.mit.edu	37	chr18	55233598	55233598	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaaattgcaaataattcatCcttcccttcagtacttagac	3	11	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55233598	A	A	55233598	1	1	3	0	1	0	0	0	0	0	0	0	5865	870	30	3		3	FECH	18	55233598	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	11197588	55233598	22843650	701	1906											
SERPINB3	6317	broad.mit.edu	37	chr18	61323207	61323207	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctctcttccactttgaacCgaggtaagtgtaaatcgaca	8	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61323207	G	G	61323207	3	3	3	1	0	0	0	0	1	0	0	0	14215	652	23	4	319	4	SERPINB3	18	61323207	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	6089609	61323207	16754041	702	1907											
TMX3	54495	broad.mit.edu	37	chr18	66355146	66355146	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaggaatttattgcaagcaTacaatcaaatgtacagaagg	8	5	1	1	rs71945526		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66355146	C	C	66355146	1	2	3	0	1	0	0	0	0	0	0	0	16391	1421	49	5		5	TMX3	18	66355146	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	5031939	66355146	11722102	703	1908											
ADNP2	22850	broad.mit.edu	37	chr18	77894782	77894782	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggccagacagctccgtcaCgggttcttcccccaggccag	12	16	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77894782	T	T	77894782	3	4	3	1	0	0	0	0	1	0	0	0	324	527	19	4	1496	4	ADNP2	18	77894782	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	11539636	77894782	182466	704	1909											
C19orf35	374872	broad.mit.edu	37	chr19	2280966	2280966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaacggggcgtgtgtgggGtgaccgtgtgcacgcacagg	18	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2280966	T	T	2280966	1	4	3	0	1	0	0	0	0	0	0	0	1939	1276	44	3		3	C19orf35	19	2280966	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08		2280966	56848017	705	1910											
DAPK3	1613	broad.mit.edu	37	chr19	3961336	3961336	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcccagacaccacccaagaGgcattcaaaatccacccccc	4	19	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3961336	C	C	3961336	1	2	3	0	1	0	0	0	0	0	0	0	4270	1015	35	4		4	DAPK3	19	3961336	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1680370	3961336	55167647	706	1911											
ZNRF4	148066	broad.mit.edu	37	chr19	5456195	5456195	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgggctgcaacaagtcGgcccacgcgctgctcctgcc	11	17	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5456195	T	T	5456195	2	4	3	1	0	0	0	0	0	0	0	1	18343	1103	39	1		1	ZNRF4	19	5456195	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1494859	5456195	53672788	707	1912											
TMEM146	257062	broad.mit.edu	37	chr19	5748092	5748092	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttgggtggtggcaggggTggctgtggtcccagtagtag	22	5	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5748092	G	G	5748092	1	3	3	0	1	0	0	0	0	0	0	0	16183	1711	59	5		5	TMEM146	19	5748092	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	291897	5748092	53380891	708	1913											
C3	718	broad.mit.edu	37	chr19	6692982	6692982	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atcctcctggaagaccccgtCgggcttctgcttctccagga	10	15	2	1	rs121909585		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6692982	G	G	6692982	3	3	3	1	0	0	0	0	1	0	0	0	2226	884	31	4	1712	4	C3	19	6692982	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	944890	6692982	52436001	709	1914											
CLEC4M	10332	broad.mit.edu	37	chr19	7830189	7830189	+	Intron	SNP	G	C	C													ctgagggtctggggtccccaGgcctggccttttggctatga					rs117140487	by1000genomes	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7830189	C	C	7830189	1	2	3	0	1	0	0	0	0	0	0	0	3550	1015	35	4		4	CLEC4M	19	7830189	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1137207	7830189	51298794	710	1915	4	2									
CLEC4M	10332	broad.mit.edu	37	chr19	7830196	7830196	+	Intron	DEL	C	-	-													tctggggtccccaggcctggCcttttggctatgaacagagc							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7830196	-	-	7830196	6	5	3	0	1	1	0	1	0	0	0	0	3550	754	26	0		0	CLEC4M	19	7830196	Intron	DEL	C	TCGA-05-4250-01A-01D-1105-08	7	7830196	51298787	711	1916	4	2									
ACTL9	284382	broad.mit.edu	37	chr19	8808680	8808680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgccagatgagctcggcGgcatcccagtccacgacgat	13	14	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8808680	T	T	8808680	2	4	3	1	0	0	0	0	0	0	0	1	203	1103	39	1		1	ACTL9	19	8808680	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	978484	8808680	50320303	712	1917											
MUC16	94025	broad.mit.edu	37	chr19	9056608	9056608	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catggcctctgatagagaagGcatcactgtgccagtggaaa	12	9	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9056608	C	C	9056608	3	2	3	1	0	0	0	0	1	0	0	0	10067	1203	42	4	13013	4	MUC16	19	9056608	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	247928	9056608	50072375	713	1918											
CC2D1A	54862	broad.mit.edu	37	chr19	14034501	14034501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgagcagggccctcccaCcggcaggtttgaaaagttgg	13	11	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14034501	A	A	14034501	1	1	3	0	1	0	0	0	0	0	0	0	2752	522	18	3		3	CC2D1A	19	14034501	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4977893	14034501	45094482	714	1919											
CLEC17A	388512	broad.mit.edu	37	chr19	14703196	14703196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggactttttggagtgtgacCtgggggaatacagggaacag	16	5	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14703196	A	A	14703196	1	1	3	0	1	0	0	0	0	0	0	0	3533	696	24	2		2	CLEC17A	19	14703196	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	668695	14703196	44425787	715	1920											
EMR2	30817	broad.mit.edu	37	chr19	14866492	14866492	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaggtgaaggtaactgGggagctgaggttttgggtgt	20	2	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14866492	A	A	14866492	3	1	3	1	0	0	0	0	1	0	0	0	5147	1232	43	4	1117	4	EMR2	19	14866492	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	163296	14866492	44262491	716	1921											
RASAL3	64926	broad.mit.edu	37	chr19	15571845	15571845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttggctctcccctctaCctcccaccttcactggctgc	6	19	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15571845	A	A	15571845	1	1	3	0	1	0	0	0	0	0	0	0	13173	522	18	3		3	RASAL3	19	15571845	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	705353	15571845	43557138	717	1922											
OR10H2	26538	broad.mit.edu	37	chr19	15839102	15839102	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatcccgcgcatgctggcCgacctgctgtccacccagcg	10	18	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15839102	T	T	15839102	2	4	3	1	0	0	0	0	0	0	0	1	11000	639	23	4		4	OR10H2	19	15839102	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	267257	15839102	43289881	718	1923											
OR10H1	26539	broad.mit.edu	37	chr19	15918599	15918599	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgggtggacagcaggtcGgccagcatgcgcgggatgat	18	10	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15918599	A	A	15918599	2	1	3	1	0	0	0	0	0	0	0	1	10999	1103	39	4		4	OR10H1	19	15918599	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	79497	15918599	43210384	719	1924											
CYP4F2	8529	broad.mit.edu	37	chr19	16000218	16000218	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctacttcttgaattcagatCccagagaggcccaccttgct	7	13	3	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16000218	A	A	16000218	1	1	3	0	1	0	0	0	0	0	0	0	4221	870	30	3		3	CYP4F2	19	16000218	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	81619	16000218	43128765	720	1925											
CYP4F11	57834	broad.mit.edu	37	chr19	16025237	16025237	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgctgggtggggtcacCcagttgggtggggtctccca	18	10	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16025237	G	G	16025237	1	3	3	0	1	0	0	0	0	0	0	0	4219	638	22	4		4	CYP4F11	19	16025237	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	25019	16025237	43103746	721	1926											
NCAN	1463	broad.mit.edu	37	chr19	19338712	19338712	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggtctgagtctggggtcttCgacacagcagaaagccccac	13	12	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19338712	T	T	19338712	2	4	3	1	0	0	0	0	0	0	0	1	10299	883	31	4		4	NCAN	19	19338712	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	3313475	19338712	39790271	722	1927											
ZNF536	9745	broad.mit.edu	37	chr19	30935348	30935348	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggagctggaccgccacatCcgcatcttgcacaagcccta	10	15	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935348	T	T	30935348	2	4	3	1	0	0	0	0	0	0	0	1	18101	845	30	4		4	ZNF536	19	30935348	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	11596636	30935348	28193635	723	1928											
ZNF181	339318	broad.mit.edu	37	chr19	35231824	35231824	+	Frame_Shift_Del	DEL	G	-	-													cacaaaaaatttctgctgaaGggaattcacacaaatatgat							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35231824	-	-	35231824	7	5	3	1	0	1	0	1	0	0	0	0	17875	1000	35	0	552	0	ZNF181	19	35231824	Frame_Shift_Del	DEL	G	TCGA-05-4250-01A-01D-1105-08	4296476	35231824	23897159	724	1929											
FXYD5	53827	broad.mit.edu	37	chr19	35660493	35660493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtgcaggcagctgtcccGgttatgccggaatcgttgca	13	11	0	0	rs141471950		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35660493	T	T	35660493	3	4	3	1	0	0	0	0	1	0	0	0	6181	1116	39	1	542	1	FXYD5	19	35660493	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	428669	35660493	23468490	725	1930											
MLL4	9757	broad.mit.edu	37	chr19	36228979	36228979	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagatcagccatccacgggCgaggcctgttctgtaagcgc	13	13	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36228979	T	T	36228979	4	4	3	1	0	0	0	0	0	1	0	0	9716	760	27	4	7901	4	MLL4	19	36228979	Nonsense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	568486	36228979	22900004	726	1931											
ZFP30	22835	broad.mit.edu	37	chr19	38134077	38134077	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagtttcaggtctcttcttCacaattgacatctaaggggt	8	9	5	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38134077	T	T	38134077	1	4	3	0	1	0	0	0	0	0	0	0	17770	841	29	4		4	ZFP30	19	38134077	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1905098	38134077	20994906	727	1932											
RYR1	6261	broad.mit.edu	37	chr19	39018549	39018549	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggcagggcaggaggtggAgcctcgagtttaaggcgagg	21	6	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39018549	T	T	39018549	1	4	3	0	1	0	0	0	0	0	0	0	13879	319	11	5		5	RYR1	19	39018549	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	884472	39018549	20110434	728	1933											
PLEKHG2	64857	broad.mit.edu	37	chr19	39915830	39915830	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcggctgcggccagccAaggcccaggtccggttgaac	17	13	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39915830	G	G	39915830	3	3	3	1	0	0	0	0	1	0	0	0	12164	131	5	5	4127	5	PLEKHG2	19	39915830	Missense_Mutation	SNP	A	TCGA-05-4250-01A-01D-1105-08	897281	39915830	19213153	729	1934											
FCGBP	8857	broad.mit.edu	37	chr19	40368402	40368402	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagaatgtcacggtcccCaccacccatgcagacgtcca	8	16	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40368402	G	G	40368402	3	3	3	1	0	0	0	0	1	0	0	0	5835	594	21	4	3307	4	FCGBP	19	40368402	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	452572	40368402	18760581	730	1935											
SPTBN4	57731	broad.mit.edu	37	chr19	41019339	41019339	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagtggctgcgggacgcgctCgctgtctaccgcatgtttgg	15	12	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41019339	T	T	41019339	2	4	3	1	0	0	0	0	0	0	0	1	15239	871	31	4		4	SPTBN4	19	41019339	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	650937	41019339	18109644	731	1936											
LTBP4	8425	broad.mit.edu	37	chr19	41123169	41123169	+	Intron	DEL	G	-	-													tggatgggaccaaagggggtGggggaggttggtcaggccct							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41123169	-	-	41123169	6	5	3	0	1	1	0	1	0	0	0	0	9163	1363	47	0		0	LTBP4	19	41123169	Intron	DEL	G	TCGA-05-4250-01A-01D-1105-08	103830	41123169	18005814	732	1937											
LIPE	3991	broad.mit.edu	37	chr19	42930740	42930740	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctccctggactggcgttgTttgcttgtctgactgttcag	13	10	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42930740	C	C	42930740	3	2	3	1	0	0	0	0	1	0	0	0	8894	1725	60	5	2708	5	LIPE	19	42930740	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	1807571	42930740	16198243	733	1938											
CEACAM1	634	broad.mit.edu	37	chr19	43026327	43026327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagggttggagttgttgCtggagatggagggcttgggc	19	6	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43026327	A	A	43026327	3	1	3	1	0	0	0	0	1	0	0	0	3217	797	28	3	1253	3	CEACAM1	19	43026327	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	95587	43026327	16102656	734	1939											
CEACAM8	1088	broad.mit.edu	37	chr19	43093466	43093466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctacccatgtttgcctggGgcagaaagtcatgacgagct	12	11	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43093466	T	T	43093466	1	4	3	0	1	0	0	0	0	0	0	0	3228	1247	43	2		2	CEACAM8	19	43093466	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	67139	43093466	16035517	735	1940											
PSG8	440533	broad.mit.edu	37	chr19	43262023	43262023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtttgcctggggcagaaaGtcatggccaggtttgatgtc	15	7	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43262023	A	A	43262023	1	1	3	0	1	0	0	0	0	0	0	0	12767	1044	36	4		4	PSG8	19	43262023	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	168557	43262023	15866960	736	1941											
PSG1	5669	broad.mit.edu	37	chr19	43372791	43372791	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggagtcatggccagctcCgatgtccagaagtaaaggtg	14	9	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43372791	G	G	43372791	1	3	3	0	1	0	0	0	0	0	0	0	12759	667	23	4		4	PSG1	19	43372791	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	110768	43372791	15756192	737	1942											
PSG7	5676	broad.mit.edu	37	chr19	43430163	43430163	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatgaagggtaaattctGgggaggtctggaccatctgg	16	5	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43430163	C	C	43430163	2	2	3	1	0	0	0	0	0	0	0	1	12766	1335	47	4		4	PSG7	19	43430163	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	57372	43430163	15698820	738	1943											
PSG6	5675	broad.mit.edu	37	chr19	43545392	43545392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcctcctcatcctccacGgggttgctggcaacataggg	11	14	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43545392	T	T	43545392	1	4	3	0	1	0	0	0	0	0	0	0	12765	1131	39	1		1	PSG6	19	43545392	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	115229	43545392	15583591	739	1944											
PSG5	5673	broad.mit.edu	37	chr19	43679379	43679379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttaccagagacttcgaCtgtcatggatttggagcttt	9	10	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43679379	A	A	43679379	3	1	3	1	0	0	0	0	1	0	0	0	12764	565	20	3	63	3	PSG5	19	43679379	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	133987	43679379	15449604	740	1945											
ZNF284	342909	broad.mit.edu	37	chr19	44584993	44584993	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacttctggtggagctctgGaaaatcagtgtcattgcgag	13	8	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44584993	T	T	44584993	1	4	3	0	1	0	0	0	0	0	0	0	17947	1189	41	3		3	ZNF284	19	44584993	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	905614	44584993	14543990	741	1946											
ZNF225	7768	broad.mit.edu	37	chr19	44636444	44636444	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaatcttgacatgcaccaGagggtccacaccggagagag	11	10	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44636444	C	C	44636444	3	2	3	1	0	0	0	0	1	0	0	0	17905	933	33	4	1691	4	ZNF225	19	44636444	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	51451	44636444	14492539	742	1947											
SPHK2	56848	broad.mit.edu	37	chr19	49131871	49131871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgccagctgctttcctaCctgtctctttccccaacccc	4	19	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49131871	T	T	49131871	1	4	3	0	1	0	0	0	0	0	0	0	15165	522	18	4		4	SPHK2	19	49131871	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	4495427	49131871	9997112	743	1948											
PRR12	57479	broad.mit.edu	37	chr19	50102993	50102993	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacgctgccctccttctcCtcggatgaggaagactctgt	11	13	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50102993	T	T	50102993	2	4	3	1	0	0	0	0	0	0	0	1	12690	668	24	4		4	PRR12	19	50102993	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	971122	50102993	9025990	744	1949											
KLK2	3817	broad.mit.edu	37	chr19	51379647	51379647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttctttttcttccctttGgagtctcccttatcctcccc	4	15	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51379647	T	T	51379647	1	4	3	0	1	0	0	0	0	0	0	0	8475	1363	47	2		2	KLK2	19	51379647	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1276654	51379647	7749336	745	1950											
KLK14	43847	broad.mit.edu	37	chr19	51582093	51582093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaagagtccttcccgccCtggggaactcctgcacagac	10	15	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51582093	A	A	51582093	3	1	3	1	0	0	0	0	1	0	0	0	8473	680	24	2	181	2	KLK14	19	51582093	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	202446	51582093	7546890	746	1951											
ZNF610	162963	broad.mit.edu	37	chr19	52856949	52856949	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttagggacgcttgacattCatggacgtggccatcgaatt	11	8	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52856949	T	T	52856949	2	4	3	1	0	0	0	0	0	0	0	1	18163	825	29	4		4	ZNF610	19	52856949	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	1274856	52856949	6272034	747	1952											
BIRC8	112401	broad.mit.edu	37	chr19	53792981	53792981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgggacatctgtcaactGcttcagcacattgtttacaa	7	10	3	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53792981	T	T	53792981	3	4	3	1	0	0	0	0	1	0	0	0	1446	1319	46	3	67	3	BIRC8	19	53792981	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	936032	53792981	5336002	748	1953											
NLRP12	91662	broad.mit.edu	37	chr19	54318365	54318365	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccgcaccccagaatgttcAgtagtgactgcataggccgt	10	13	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54318365	T	T	54318365	1	4	3	0	1	0	0	0	0	0	0	0	10569	203	7	5		5	NLRP12	19	54318365	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	525384	54318365	4810618	749	1954											
CACNG8	59283	broad.mit.edu	37	chr19	54481548	54481548	+	Intron	SNP	G	T	T													ggggcctggaaggcgtcgggGtgggtgccgggaaaaggcac							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54481548	T	T	54481548	1	4	3	0	1	0	0	0	0	0	0	0	2589	1276	44	3		3	CACNG8	19	54481548	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	163183	54481548	4647435	750	1955	5	2									
CACNG8	59283	broad.mit.edu	37	chr19	54481550	54481550	+	Intron	SNP	G	T	T													ggcctggaaggcgtcggggtGggtgccgggaaaaggcactg							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54481550	T	T	54481550	1	4	3	0	1	0	0	0	0	0	0	0	2589	1363	47	2		2	CACNG8	19	54481550	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	2	54481550	4647433	751	1956	5	2									
KIR2DL3	3804	broad.mit.edu	37	chr19	55275191	55275191	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctcaagacagtagccgtCacatacaaaaattacggaaa	7	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55275191	T	T	55275191	1	4	3	0	1	0	0	0	0	0	0	0	8388	841	29	4		4	KIR2DL3	19	55275191	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	793641	55275191	3853792	752	1957											
NLRP8	126205	broad.mit.edu	37	chr19	56463807	56463807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagactctgaagccatgtgGctgcttctgtcctaaaaagg	11	9	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56463807	T	T	56463807	1	4	3	0	1	0	0	0	0	0	0	0	10578	1218	42	3		3	NLRP8	19	56463807	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	1188616	56463807	2665176	753	1958											
NLRP5	126206	broad.mit.edu	37	chr19	56539809	56539809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtatttgcggaaaattcGggtggatgtcaaagggatct	13	6	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56539809	T	T	56539809	3	4	3	1	0	0	0	0	1	0	0	0	10575	1116	39	1	2236	1	NLRP5	19	56539809	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	76002	56539809	2589174	754	1959											
NLRP5	126206	broad.mit.edu	37	chr19	56565064	56565064	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtcctgtgtgatctcgagGagcagacacctgaagagcct	12	11	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56565064	A	A	56565064	2	1	3	1	0	0	0	0	0	0	0	1	10575	1165	41	4		4	NLRP5	19	56565064	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	25255	56565064	2563919	755	1960											
ZIM3	114026	broad.mit.edu	37	chr19	57647096	57647096	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttccacttctccccgaaTgctcttccacagctatgaca	5	16	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57647096	C	C	57647096	2	2	3	1	0	0	0	0	0	0	0	1	17811	1451	51	5		5	ZIM3	19	57647096	Silent	SNP	T	TCGA-05-4250-01A-01D-1105-08	1082032	57647096	1481887	756	1961											
ZNF211	10520	broad.mit.edu	37	chr19	58153284	58153284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaccagagagttcacactgGagaaagacctgttgagtgca	11	10	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58153284	T	T	58153284	3	4	3	1	0	0	0	0	1	0	0	0	17893	1174	41	3	1483	3	ZNF211	19	58153284	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	506188	58153284	975699	757	1962											
ZNF324B	388569	broad.mit.edu	37	chr19	58967524	58967524	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgcgcgctctgcggtgctGccttcagccagggctcctcg	13	15	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58967524	C	C	58967524	3	2	3	1	0	0	0	0	1	0	0	0	17971	1319	46	4	1223	4	ZNF324B	19	58967524	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	814240	58967524	161459	758	1963											
C20orf96	140680	broad.mit.edu	37	chr20	257517	257517	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcatagggacgctgggTttcctgtggaggaagaagag	15	7	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	257517	A	A	257517	3	1	3	1	0	0	0	0	1	0	0	0	2144	1725	60	5	274	5	C20orf96	20	257517	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08		257517	62768003	759	1964											
RBCK1	10616	broad.mit.edu	37	chr20	391276	391276	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagctagaattcaggggttCgcttggtaagggaagggaag	16	5	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	391276	T	T	391276	1	4	3	0	1	0	0	0	0	0	0	0	13215	899	31	4		4	RBCK1	20	391276	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	133759	391276	62634244	760	1965											
SIRPA	140885	broad.mit.edu	37	chr20	1917939	1917939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaatgaccttctcatgaCtttctctttgggtatcttaa	6	8	3	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1917939	A	A	1917939	1	1	3	0	1	0	0	0	0	0	0	0	14445	580	20	3		3	SIRPA	20	1917939	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1526663	1917939	61107581	761	1966											
PLCB1	23236	broad.mit.edu	37	chr20	8678571	8678571	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaatttcagaggctaaaAtttggctgtttattcatgaa	8	5	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8678571	C	C	8678571	1	2	3	0	1	0	0	0	0	0	0	0	12122	116	4	5		5	PLCB1	20	8678571	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	6760632	8678571	54346949	762	1967											
POLR3F	10621	broad.mit.edu	37	chr20	18455927	18455927	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagaacagctggtcaaaaaaGacttaaaaatttagctcatg	7	6	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18455927	C	C	18455927	1	2	3	0	1	0	0	0	0	0	0	0	12328	957	33	4		4	POLR3F	20	18455927	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	9777356	18455927	44569593	763	1968											
SLC24A3	57419	broad.mit.edu	37	chr20	19665960	19665960	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgatgaggaggaagaggagGacgaggatgatgatgaagga	19	1	0	6			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19665960	A	A	19665960	3	1	3	1	0	0	0	0	1	0	0	0	14581	1174	41	4	1325	4	SLC24A3	20	19665960	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1210033	19665960	43359560	764	1969											
CST9	128822	broad.mit.edu	37	chr20	23584184	23584184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggaatggctttgtcagctGctcctgtgcccacaccacac	9	15	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23584184	T	T	23584184	3	4	3	1	0	0	0	0	1	0	0	0	4013	1319	46	3	40	3	CST9	20	23584184	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	3918224	23584184	39441336	765	1970											
SUN5	140732	broad.mit.edu	37	chr20	31590750	31590750	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgataagattcatagtcGcattttacaattatgaggaa	9	4	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31590750	A	A	31590750	1	1	3	0	1	0	0	0	0	0	0	0	15512	1102	38	4		4	SUN5	20	31590750	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	8006566	31590750	31434770	766	1971											
E2F1	1869	broad.mit.edu	37	chr20	32265061	32265061	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggtcttcccagggctgaTcccacctacggtctcctcag	11	15	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32265061	C	C	32265061	3	2	3	1	0	0	0	0	1	0	0	0	4906	1435	50	5	405	5	E2F1	20	32265061	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	674311	32265061	30760459	767	1972											
KIAA0406	9675	broad.mit.edu	37	chr20	36611948	36611948	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgcacagggtggaggctGgggtggggaggtgtgaactg	22	5	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36611948	C	C	36611948	2	2	3	1	0	0	0	0	0	0	0	1	8243	1335	47	4		4	KIAA0406	20	36611948	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	4346887	36611948	26413572	768	1973											
BPI	671	broad.mit.edu	37	chr20	36937430	36937430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacgccaatatcaagatcaGcgggaaatggaaggcacaaa	10	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36937430	T	T	36937430	3	4	3	1	0	0	0	0	1	0	0	0	1499	971	34	3	366	3	BPI	20	36937430	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	325482	36937430	26088090	769	1974											
SERINC3	10955	broad.mit.edu	37	chr20	43150551	43150551	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggactcgggaccccgaactCacccagctggcgagggagaa	14	13	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43150551	T	T	43150551	1	4	3	0	1	0	0	0	0	0	0	0	14194	841	29	4		4	SERINC3	20	43150551	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	6213121	43150551	19874969	770	1975											
SLC35C2	51006	broad.mit.edu	37	chr20	44984529	44984529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacctggaagcaaaattaCccacaatgcactgctggagc	9	11	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44984529	A	A	44984529	1	1	3	0	1	0	0	0	0	0	0	0	14694	522	18	3		3	SLC35C2	20	44984529	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1833978	44984529	18040991	771	1976											
SULF2	55959	broad.mit.edu	37	chr20	46318884	46318884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttacatgtgctgagatgcGtttgggaagaggcgtgaata	15	5	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46318884	T	T	46318884	3	4	3	1	0	0	0	0	1	0	0	0	15489	1136	40	3	1957	3	SULF2	20	46318884	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1334355	46318884	16706636	772	1977											
DOK5	55816	broad.mit.edu	37	chr20	53205280	53205280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggagtgtgtaggaacacGgatcaatgacatcagccttg	13	7	2	1	rs148783714	byFrequency	TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53205280	T	T	53205280	3	4	3	1	0	0	0	0	1	0	0	0	4740	1116	39	1	358	1	DOK5	20	53205280	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	6886396	53205280	9820240	773	1978											
PCK1	5105	broad.mit.edu	37	chr20	56138620	56138620	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaatcttgtccccaacaGattctgggtataaccaaccc	6	12	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138620	T	T	56138620	5	4	3	1	0	0	0	0	0	0	1	0	11675	956	33	3	816	3	PCK1	20	56138620	Splice_Site	SNP	G	TCGA-05-4250-01A-01D-1105-08	2933340	56138620	6886900	774	1979											
NPEPL1	79716	broad.mit.edu	37	chr20	57268829	57268829	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcacgctcaaccccaacCccacggacagctgtcccctc	7	20	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57268829	T	T	57268829	3	4	3	1	0	0	0	0	1	0	0	0	10669	623	22	4	39	4	NPEPL1	20	57268829	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	1130209	57268829	5756691	775	1980											
HRH3	11255	broad.mit.edu	37	chr20	60791983	60791983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggcccggtatgagacCtgcagaagggcaggctggtc	17	10	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60791983	A	A	60791983	1	1	3	0	1	0	0	0	0	0	0	0	7424	695	24	2		2	HRH3	20	60791983	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	3523154	60791983	2233537	776	1981											
LAMA5	3911	broad.mit.edu	37	chr20	60902396	60902396	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggagcatctccgtccctgGctgccgctcgtggggcacca	13	16	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60902396	A	A	60902396	3	1	3	1	0	0	0	0	1	0	0	0	8681	1203	42	4	6254	4	LAMA5	20	60902396	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	110413	60902396	2123124	777	1982											
LAMA5	3911	broad.mit.edu	37	chr20	60906119	60906119	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcgccgtggctgctgaTgcagctgacccggggctcca	15	13	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60906119	A	A	60906119	3	1	3	1	0	0	0	0	1	0	0	0	8681	1464	51	5	7676	5	LAMA5	20	60906119	Missense_Mutation	SNP	T	TCGA-05-4250-01A-01D-1105-08	3723	60906119	2119401	778	1983											
CHRNA4	1137	broad.mit.edu	37	chr20	61982414	61982414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaagggtgtgagaccccCacatccatgcccacgtccac	10	16	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61982414	A	A	61982414	1	1	3	0	1	0	0	0	0	0	0	0	3416	609	21	2		2	CHRNA4	20	61982414	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1076295	61982414	1043106	779	1984											
SRMS	6725	broad.mit.edu	37	chr20	62174736	62174736	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgtagtaggtgagcagCtcctccaggccgggaaagag	15	10	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62174736	T	T	62174736	2	4	3	1	0	0	0	0	0	0	0	1	15270	796	28	4		4	SRMS	20	62174736	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	192322	62174736	850784	780	1985											
TPTE	7179	broad.mit.edu	37	chr21	10920051	10920051	+	Intron	DEL	A	-	-													caatctgaacccacacccctAaaaaaactcccatttttaaa							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10920051	-	-	10920051	6	5	3	0	1	1	0	1	0	0	0	0	16554	377	13	0		0	TPTE	21	10920051	Intron	DEL	A	TCGA-05-4250-01A-01D-1105-08		10920051	37209844	781	1986											
TPTE	7179	broad.mit.edu	37	chr21	10973829	10973829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacacaattcaaaatttaCttttctggtaaaactagctt	5	7	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10973829	A	A	10973829	1	1	3	0	1	0	0	0	0	0	0	0	16554	580	20	3		3	TPTE	21	10973829	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	53778	10973829	37156066	782	1987											
GRIK1	2897	broad.mit.edu	37	chr21	31061956	31061956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaaagagcatttttatgCtccatctgatgagtttaatg	7	5	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31061956	A	A	31061956	1	1	3	0	1	0	0	0	0	0	0	0	6839	812	28	3		3	GRIK1	21	31061956	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	20088127	31061956	17067939	783	1988											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31797799	31797799	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagattggatggcagaatctGgatctataactctgggaagg	13	5	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31797799	T	T	31797799	2	4	3	1	0	0	0	0	0	0	0	1	8595	1335	47	2		2	KRTAP13-3	21	31797799	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	735843	31797799	16332096	784	1989											
DSCAM	1826	broad.mit.edu	37	chr21	41559769	41559769	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgaggctgagcatacagctCccatcctgaaatgactgtgt	10	11	0	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41559769	T	T	41559769	1	4	3	0	1	0	0	0	0	0	0	0	4808	870	30	4		4	DSCAM	21	41559769	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	9761970	41559769	6570126	785	1990											
DSCAM	1826	broad.mit.edu	37	chr21	42080837	42080837	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaaataattcaaatttTctgaaaatgctgtgagcaga	6	6	2	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42080837	A	A	42080837	1	1	3	0	1	0	0	0	0	0	0	0	4808	1798	62	5		5	DSCAM	21	42080837	Intron	SNP	T	TCGA-05-4250-01A-01D-1105-08	521068	42080837	6049058	786	1991											
COL6A1	1291	broad.mit.edu	37	chr21	47412102	47412102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgggagagcctgggcccCccggagagaaaggagaggcg	19	11	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47412102	T	T	47412102	3	4	3	1	0	0	0	0	1	0	0	0	3731	623	22	4	1273	4	COL6A1	21	47412102	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	5331265	47412102	717793	787	1992											
DIP2A	23181	broad.mit.edu	37	chr21	47969892	47969892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggttggcttgtcccgcccGgtcctccctggctccagctt	12	16	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47969892	T	T	47969892	1	4	3	0	1	0	0	0	0	0	0	0	4567	1131	39	1		1	DIP2A	21	47969892	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	557790	47969892	160003	788	1993											
GAB4	128954	broad.mit.edu	37	chr22	17446952	17446952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaagcgaatgcagagtccCtggacattgtcaagaaatag	10	9	1	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17446952	A	A	17446952	1	1	3	0	1	0	0	0	0	0	0	0	6211	696	24	2		2	GAB4	22	17446952	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08		17446952	33857614	789	1994											
PRAME	23532	broad.mit.edu	37	chr22	22890696	22890696	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactctccagggggacaggAtacagcacgtgggtcagatt	13	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22890696	G	G	22890696	2	3	3	1	0	0	0	0	0	0	0	1	12525	340	12	5		5	PRAME	22	22890696	Silent	SNP	A	TCGA-05-4250-01A-01D-1105-08	5443744	22890696	28413870	790	1995											
SMARCB1	6598	broad.mit.edu	37	chr22	24129426	24129426	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccagctggaggacgacggcGagttctacatgatcggctcc	13	12	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24129426	C	C	24129426	3	2	3	1	0	0	0	0	1	0	0	0	14888	1059	37	4	72	4	SMARCB1	22	24129426	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	1238730	24129426	27175140	791	1996											
LRP5L	91355	broad.mit.edu	37	chr22	25755958	25755958	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcgatgtcatcggggtcGttgatcttggtgttgatcag	14	7	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25755958	A	A	25755958	2	1	3	1	0	0	0	0	0	0	0	1	9048	1136	40	4		4	LRP5L	22	25755958	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	1626532	25755958	25548608	792	1997											
SEZ6L	23544	broad.mit.edu	37	chr22	26706651	26706651	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggatgacggttcacagCgggcagaccaacaagtcagc	13	12	2	2	rs147328329		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26706651	T	T	26706651	2	4	3	1	0	0	0	0	0	0	0	1	14256	767	27	4		4	SEZ6L	22	26706651	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	950693	26706651	24597915	793	1998											
PES1	23481	broad.mit.edu	37	chr22	30977532	30977532	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccttcgggggatagtggaGgttgagcaactggtaaaggc	16	6	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30977532	A	A	30977532	3	1	3	1	0	0	0	0	1	0	0	0	11827	1000	35	4	1072	4	PES1	22	30977532	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	4270881	30977532	20327034	794	1999											
TOM1	10043	broad.mit.edu	37	chr22	35743195	35743195	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgatgacatgctgtttgCcttatgagtgtggggtctgg	15	5	1	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35743195	T	T	35743195	3	4	3	1	0	0	0	0	1	0	0	0	16474	739	26	4	1533	4	TOM1	22	35743195	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	4765663	35743195	15561371	795	2000											
KDELR3	11015	broad.mit.edu	37	chr22	38878654	38878654	+	3'UTR	DEL	T	-	-													atgttaaaaccagaaaagtgTttagtgtggatttcagcaaa							TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38878654	-	-	38878654	6	5	3	0	1	1	0	1	0	0	0	0	8191	1740	60	0		0	KDELR3	22	38878654	3'UTR	DEL	T	TCGA-05-4250-01A-01D-1105-08	3135459	38878654	12425912	796	2001											
RPL3	6122	broad.mit.edu	37	chr22	39710735	39710735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtagcctttctgcccagCgcgtgccacagagaaggcta	12	12	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39710735	A	A	39710735	3	1	3	1	0	0	0	0	1	0	0	0	13690	768	27	3	426	3	RPL3	22	39710735	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	832081	39710735	11593831	797	2002											
ADSL	158	broad.mit.edu	37	chr22	40759087	40759087	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccccaaagtaagaagcctCaattcaaaagtaaagtacta	5	9	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40759087	A	A	40759087	1	1	3	0	1	0	0	0	0	0	0	0	346	841	29	3		3	ADSL	22	40759087	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	1048352	40759087	10545479	798	2003											
TTLL8	164714	broad.mit.edu	37	chr22	50487531	50487531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagccaggccctgctgccCggtcaaggggccctgctgtg	16	15	1	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50487531	A	A	50487531	1	1	3	0	1	0	0	0	0	0	0	0	16859	667	23	1		1	TTLL8	22	50487531	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	9728444	50487531	817035	799	2004											
MLC1	23209	broad.mit.edu	37	chr22	50512860	50512860	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacccccaggagcagggtccAgtgggctggccccagatcta	14	14	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50512860	C	C	50512860	1	2	3	0	1	0	0	0	0	0	0	0	9705	203	7	5		5	MLC1	22	50512860	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	25329	50512860	791706	800	2005											
MLC1	23209	broad.mit.edu	37	chr22	50515229	50515229	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcctcagtcacccccgaCagagtatgagagaaaagaga	10	12	2	4			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50515229	T	T	50515229	1	4	3	0	1	0	0	0	0	0	0	0	9705	493	17	4		4	MLC1	22	50515229	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	2369	50515229	789337	801	2006											
ARHGAP6	395	broad.mit.edu	37	chrX	11316665	11316665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctctctgtttctcacCagtacccttcctatggttac	5	16	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11316665	A	A	11316665	1	1	3	0	1	0	0	0	0	0	0	0	889	609	21	2		2	ARHGAP6	23	11316665	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08		11316665	143953895	802	2007											
FAM48B2	170067	broad.mit.edu	37	chrX	24329200	24329200	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgccccaagacaaaggGgagctggacaccctgctgag	13	13	0	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24329200	A	A	24329200	3	1	3	1	0	0	0	0	1	0	0	0	5625	1232	43	4	223	4	FAM48B2	23	24329200	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	13012535	24329200	130941360	803	2008											
PCYT1B	9468	broad.mit.edu	37	chrX	24580290	24580290	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcccttagcagagttcagGgtctctctgctgagctgcag	11	12	3	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24580290	C	C	24580290	1	2	3	0	1	0	0	0	0	0	0	0	11705	1247	43	4		4	PCYT1B	23	24580290	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	251090	24580290	130690270	804	2009											
HEPH	9843	broad.mit.edu	37	chrX	65408432	65408432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagggaacattgttggagGgtatccactgggcctagtat	14	7	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65408432	T	T	65408432	1	4	3	0	1	0	0	0	0	0	0	0	7121	1247	43	2		2	HEPH	23	65408432	Intron	SNP	G	TCGA-05-4250-01A-01D-1105-08	40828142	65408432	89862128	805	2010											
SATL1	340562	broad.mit.edu	37	chrX	84363926	84363926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggctggtttatgcctgCttggttcgagtctgataaac	12	8	1	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84363926	A	A	84363926	3	1	3	1	0	0	0	0	1	0	0	0	13967	797	28	3	1869	3	SATL1	23	84363926	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	18955494	84363926	70906634	806	2011											
DACH2	117154	broad.mit.edu	37	chrX	86068012	86068012	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgaccaacattcaggtcaAcaatatttctataaacaaaa	4	8	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86068012	C	C	86068012	1	2	3	0	1	0	0	0	0	0	0	0	4254	58	2	5		5	DACH2	23	86068012	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	1704086	86068012	69202548	807	2012											
PCDH11X	27328	broad.mit.edu	37	chrX	91873723	91873723	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcaggcccaatcatcagtCagtttgcagcaaggttgggt	12	9	4	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873723	A	A	91873723	2	1	3	1	0	0	0	0	0	0	0	1	11602	813	29	3		3	PCDH11X	23	91873723	Silent	SNP	C	TCGA-05-4250-01A-01D-1105-08	5805711	91873723	63396837	808	2013											
SRPX2	27286	broad.mit.edu	37	chrX	99911966	99911966	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagcctcattcttgttgcAcaggctggagtgcagtggcg	15	9	2	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99911966	C	C	99911966	1	2	3	0	1	0	0	0	0	0	0	0	15283	174	6	5		5	SRPX2	23	99911966	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	8038243	99911966	55358594	809	2014											
NXF2B	728343	broad.mit.edu	37	chrX	101615492	101615492	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaacaaagaggatgtgaacGaagacaaagaagacatcgga	12	5	0	5			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101615492	A	A	101615492	1	1	3	0	1	0	0	0	0	0	0	0	10879	1073	37	4		4	NXF2B	23	101615492	3'UTR	SNP	G	TCGA-05-4250-01A-01D-1105-08	1703526	101615492	53655068	810	2015											
CAPN6	827	broad.mit.edu	37	chrX	110492304	110492304	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactaagggaaagagaccacCacagaggtgagttagcattc	11	8	0	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110492304	G	G	110492304	1	3	3	0	1	0	0	0	0	0	0	0	2656	609	21	4		4	CAPN6	23	110492304	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	8876812	110492304	44778256	811	2016											
LAMP2	3920	broad.mit.edu	37	chrX	119565408	119565408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgacagcacttcctaacaCgcatattttggttttttata	5	8	0	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119565408	A	A	119565408	1	1	3	0	1	0	0	0	0	0	0	0	8690	551	19	3		3	LAMP2	23	119565408	Intron	SNP	C	TCGA-05-4250-01A-01D-1105-08	9073104	119565408	35705152	812	2017											
FRMD7	90167	broad.mit.edu	37	chrX	131233313	131233313	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagcagcatgatttctttcAtctcaggcaaaattaaaaca	5	10	3	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131233313	T	T	131233313	1	4	3	0	1	0	0	0	0	0	0	0	6115	232	8	5		5	FRMD7	23	131233313	Intron	SNP	A	TCGA-05-4250-01A-01D-1105-08	11667905	131233313	24037247	813	2018											
GPR112	139378	broad.mit.edu	37	chrX	135439865	135439865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttcttttgcattagttGgaacagagagaaggacaaga	10	5	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135439865	T	T	135439865	3	4	3	1	0	0	0	0	1	0	0	0	6694	1339	47	2	6956	2	GPR112	23	135439865	Missense_Mutation	SNP	G	TCGA-05-4250-01A-01D-1105-08	4206552	135439865	19830695	814	2019											
CDR1	1038	broad.mit.edu	37	chrX	139866270	139866270	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacaaagccatgtcttccaGactatccatgtcttccagaa	5	13	2	2			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139866270	A	A	139866270	2	1	3	1	0	0	0	0	0	0	0	1	3201	933	33	4		4	CDR1	23	139866270	Silent	SNP	G	TCGA-05-4250-01A-01D-1105-08	4426405	139866270	15404290	815	2020											
SLITRK2	84631	broad.mit.edu	37	chrX	144905579	144905579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaaagactggacagaaCatgccaattcccctgtcatc	9	12	1	3			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144905579	A	A	144905579	3	1	3	1	0	0	0	0	1	0	0	0	14857	478	17	3	1638	3	SLITRK2	23	144905579	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	5039309	144905579	10364981	816	2021											
GPR50	9248	broad.mit.edu	37	chrX	150348572	150348572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggcaccatcgagtacgatCctcgcacctacacctgcatc	7	16	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150348572	A	A	150348572	3	1	3	1	0	0	0	0	1	0	0	0	6762	855	30	3	523	3	GPR50	23	150348572	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	5442993	150348572	4921988	817	2022											
MAGEA4	4103	broad.mit.edu	37	chrX	151092768	151092768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgtcctgggcacaattgCaatggagggcgacagcgcct	13	11	0	0			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151092768	A	A	151092768	3	1	3	1	0	0	0	0	1	0	0	0	9258	710	25	3	634	3	MAGEA4	23	151092768	Missense_Mutation	SNP	C	TCGA-05-4250-01A-01D-1105-08	744196	151092768	4177792	818	2023											
MAGEA5	4104	broad.mit.edu	37	chrX	151283365	151283365	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagattttctcctcagggAcgcatttgccctccattgca	7	15	2	1			TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151283365	T	T	151283365	1	4	3	0	1	0	0	0	0	0	0	0	9259	290	10	5		5	MAGEA5	23	151283365	3'UTR	SNP	A	TCGA-05-4250-01A-01D-1105-08	190597	151283365	3987195	819	2024											
KLHL17	339451	broad.mit.edu	37	chr1	900324	900324	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttcctgcagccaggggctCaccccgccttccccccagga	9	21	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	900324	T	T	900324	1	4	4	0	1	0	0	0	0	0	0	0	8443	841	29	4		4	KLHL17	1	900324	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		900324	248350297	1	2025											
UBE2J2	118424	broad.mit.edu	37	chr1	1190769	1190769	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcagctgaatcccgttctgGacgaggtgcgtctccccgtc	12	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1190769	A	A	1190769	2	1	4	1	0	0	0	0	0	0	0	1	16987	1161	41	4		4	UBE2J2	1	1190769	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	290445	1190769	248059852	2	2026											
DVL1	1855	broad.mit.edu	37	chr1	1275302	1275302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcccccgcagacccaccCgcagccgcatgtcccccagc	9	23	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1275302	A	A	1275302	1	1	4	0	1	0	0	0	0	0	0	0	4875	667	23	1		1	DVL1	1	1275302	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	84533	1275302	247975319	3	2027											
KIAA1751	85452	broad.mit.edu	37	chr1	1920390	1920390	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacatttgatgtcaaactcCggatcctctaattcatctct	5	11	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1920390	G	G	1920390	2	3	4	1	0	0	0	0	0	0	0	1	8326	639	23	4		4	KIAA1751	1	1920390	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	645088	1920390	247330231	4	2028											
GABRD	2563	broad.mit.edu	37	chr1	1956518	1956518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcggtccaggcccggcaGgcaggagccgctggagccca	19	14	0	0	rs112537498		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1956518	T	T	1956518	1	4	4	0	1	0	0	0	0	0	0	0	6229	1015	35	2		2	GABRD	1	1956518	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	36128	1956518	247294103	5	2029											
PLCH2	9651	broad.mit.edu	37	chr1	2419254	2419254	+	Intron	DEL	G	-	-													cacccacatgtcctttctttGggagcagtgactgtggtgac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2419254	-	-	2419254	6	5	4	0	1	1	0	1	0	0	0	0	12133	1363	47	0		0	PLCH2	1	2419254	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	462736	2419254	246831367	6	2030											
MMEL1	79258	broad.mit.edu	37	chr1	2535505	2535505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaccggcccacccagcaCcccctcaccttggccagcca	7	22	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2535505	A	A	2535505	1	1	4	0	1	0	0	0	0	0	0	0	9739	522	18	3		3	MMEL1	1	2535505	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	116251	2535505	246715116	7	2031											
ACTRT2	140625	broad.mit.edu	37	chr1	2939410	2939410	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctcgttgggtaccgtgGggggtgaaccctagccccag	15	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2939410	A	A	2939410	1	1	4	0	1	0	0	0	0	0	0	0	219	1247	43	4		4	ACTRT2	1	2939410	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	403905	2939410	246311211	8	2032											
MEGF6	1953	broad.mit.edu	37	chr1	3518973	3518973	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcccagctcccgggtggtCagtgccgccctttgtgtgaa	13	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3518973	A	A	3518973	1	1	4	0	1	0	0	0	0	0	0	0	9555	841	29	3		3	MEGF6	1	3518973	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	579563	3518973	245731648	9	2033											
CCDC27	148870	broad.mit.edu	37	chr1	3669282	3669282	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccagccgggacgcccgGtgcccagaatggaaaccgca	14	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3669282	T	T	3669282	2	4	4	1	0	0	0	0	0	0	0	1	2828	1248	44	3		3	CCDC27	1	3669282	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	150309	3669282	245581339	10	2034											
C1orf174	339448	broad.mit.edu	37	chr1	3807396	3807396	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgcagccaccgagaggaaGacttgcagccccctgctgca	11	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3807396	A	A	3807396	3	1	4	1	0	0	0	0	1	0	0	0	2035	942	33	4	384	4	C1orf174	1	3807396	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	138114	3807396	245443225	11	2035											
NPHP4	261734	broad.mit.edu	37	chr1	5967250	5967250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagtgctgagtcggggaCcgcggggaggccgccagctg	19	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5967250	A	A	5967250	2	1	4	1	0	0	0	0	0	0	0	1	10676	494	18	3		3	NPHP4	1	5967250	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2159854	5967250	243283371	12	2036											
KCNAB2	8514	broad.mit.edu	37	chr1	6147562	6147562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaccaccaagatcttctGgggcggaaagtaggtgcaac	11	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6147562	T	T	6147562	3	4	4	1	0	0	0	0	1	0	0	0	8080	1357	47	2	388	2	KCNAB2	1	6147562	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	180312	6147562	243103059	13	2037											
CHD5	26038	broad.mit.edu	37	chr1	6196657	6196657	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggggtccctgtcagcagCagcttgtaatcaatcttgta	12	9	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6196657	G	G	6196657	2	3	4	1	0	0	0	0	0	0	0	1	3359	697	25	4		4	CHD5	1	6196657	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	49095	6196657	243053964	14	2038											
CHD5	26038	broad.mit.edu	37	chr1	6209508	6209508	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtcatggaagtcctcaTccacactcccagcacacaac	7	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6209508	A	A	6209508	1	1	4	0	1	0	0	0	0	0	0	0	3359	1450	50	5		5	CHD5	1	6209508	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	12851	6209508	243041113	15	2039											
CHD5	26038	broad.mit.edu	37	chr1	6215812	6215812	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagaggtagagttgttgaGgggccttctgacctgcaccc	14	11	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6215812	C	C	6215812	1	2	4	0	1	0	0	0	0	0	0	0	3359	1015	35	4		4	CHD5	1	6215812	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	6304	6215812	243034809	16	2040											
CAMTA1	23261	broad.mit.edu	37	chr1	7202101	7202101	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacctcacgctagcttcctCtgtgctgggaagggcccttg	11	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7202101	T	T	7202101	1	4	4	0	1	0	0	0	0	0	0	0	2639	928	32	4		4	CAMTA1	1	7202101	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	986289	7202101	242048520	17	2041											
CAMTA1	23261	broad.mit.edu	37	chr1	7811134	7811134	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttttgtgattaaaccccgGacagagaatgtgataataga	9	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7811134	T	T	7811134	1	4	4	0	1	0	0	0	0	0	0	0	2639	1189	41	3		3	CAMTA1	1	7811134	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	609033	7811134	241439487	18	2042											
RERE	473	broad.mit.edu	37	chr1	8425871	8425871	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgccaagacccctactcaCagaattcactggacgggggt	11	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8425871	T	T	8425871	5	4	4	1	0	0	0	0	0	0	1	0	13339	492	17	4	3296	4	RERE	1	8425871	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	614737	8425871	240824750	19	2043											
UBE4B	10277	broad.mit.edu	37	chr1	10221161	10221162	+	Intron	DNP	GG	TT	TT													gctgtggcattttgcttcagGgagatgtatgaccatgtaca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10221162	TT	TT	10221161	1	4	4	0	1	0	0	0	0	0	0	0	17009	1247	43	2		2	UBE4B	1	10221161	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	1795290	10221161	239029460	20	2044											
KIF1B	23095	broad.mit.edu	37	chr1	10335490	10335490	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcctttaatagagtaAaaagaagaagaaaacagatt	6	4	1	5	rs141350047	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10335490	T	T	10335490	3	4	4	1	0	0	0	0	1	0	0	0	8354	14	1	5	903	5	KIF1B	1	10335490	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	114329	10335490	238915131	21	2045											
NPPB	4879	broad.mit.edu	37	chr1	11918461	11918461	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgggggctctcctggagGggctccagggatgtctgctc	18	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11918461	A	A	11918461	2	1	4	1	0	0	0	0	0	0	0	1	10687	1219	43	4		4	NPPB	1	11918461	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1582971	11918461	237332160	22	2046											
AADACL3	126767	broad.mit.edu	37	chr1	12785391	12785391	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgccccggatccgggctCagatcctgatctatgccatt	9	14	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12785391	T	T	12785391	4	4	4	1	0	0	0	0	0	1	0	0	12	827	29	4	499	4	AADACL3	1	12785391	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	866930	12785391	236465230	23	2047											
PRAMEF12	390999	broad.mit.edu	37	chr1	12837328	12837328	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagttctgctggagcaagcTgaggccaccctgcagaccct	11	14	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12837328	G	G	12837328	2	3	4	1	0	0	0	0	0	0	0	1	12529	1567	55	5		5	PRAMEF12	1	12837328	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	51937	12837328	236413293	24	2048											
PRAMEF4	400735	broad.mit.edu	37	chr1	12941888	12941888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaaactgtgtcaggatgGgcagtacccacttgcaattc	12	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12941888	T	T	12941888	3	4	4	1	0	0	0	0	1	0	0	0	12541	1232	43	2	782	2	PRAMEF4	1	12941888	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	104560	12941888	236308733	25	2049											
CASP9	842	broad.mit.edu	37	chr1	15831140	15831140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgaaaaagagcttgggCttccctcccaggctggggca	14	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15831140	A	A	15831140	3	1	4	1	0	0	0	0	1	0	0	0	2705	796	28	3	432	3	CASP9	1	15831140	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2889252	15831140	233419481	26	2050											
CROCC	9696	broad.mit.edu	37	chr1	17183313	17183313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcctctgagaggaagccCttggagaatgaactagggaa	13	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17183313	A	A	17183313	1	1	4	0	1	0	0	0	0	0	0	0	3925	696	24	2		2	CROCC	1	17183313	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1352173	17183313	232067308	27	2051											
PADI3	51702	broad.mit.edu	37	chr1	17593246	17593246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggcccagtgggtatggCggcatcttgctggtgaactg	18	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17593246	A	A	17593246	2	1	4	1	0	0	0	0	0	0	0	1	11473	755	27	3		3	PADI3	1	17593246	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	409933	17593246	231657375	28	2052											
PADI6	353238	broad.mit.edu	37	chr1	17720679	17720679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggagagggcccaggtgGcctctgaggggggaggggac	24	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17720679	T	T	17720679	1	4	4	0	1	0	0	0	0	0	0	0	11475	1218	42	3		3	PADI6	1	17720679	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	127433	17720679	231529942	29	2053											
RCC2	55920	broad.mit.edu	37	chr1	17736359	17736359	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagacaccaggaaagccagcTgagatggtaaacaagacaac	11	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17736359	A	A	17736359	1	1	4	0	1	0	0	0	0	0	0	0	13282	1595	55	5		5	RCC2	1	17736359	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	15680	17736359	231514262	30	2054											
PAX7	5081	broad.mit.edu	37	chr1	18961073	18961073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctggcagctggcttcctaTagtcgggggctcctggttgt	16	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18961073	C	C	18961073	1	2	4	0	1	0	0	0	0	0	0	0	11578	1421	49	5		5	PAX7	1	18961073	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1224714	18961073	230289548	31	2055											
TAS1R2	80834	broad.mit.edu	37	chr1	19166909	19166909	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggcggccagcagggccacAgcgatggtgggtgcctcatg	18	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19166909	T	T	19166909	2	4	4	1	0	0	0	0	0	0	0	1	15682	175	7	5		5	TAS1R2	1	19166909	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	205836	19166909	230083712	32	2056											
AKR7A3	22977	broad.mit.edu	37	chr1	19611484	19611484	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtgggtcgggaataggctGagacagggccaggaatgctc	17	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19611484	C	C	19611484	1	2	4	0	1	0	0	0	0	0	0	0	476	1305	45	4		4	AKR7A3	1	19611484	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	444575	19611484	229639137	33	2057											
PLA2G2E	30814	broad.mit.edu	37	chr1	20246811	20246811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatagcctcagcagggcgGggtgggcccggtgcacagct	17	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20246811	T	T	20246811	3	4	4	1	0	0	0	0	1	0	0	0	12093	1232	43	2	14	2	PLA2G2E	1	20246811	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	635327	20246811	229003810	34	2058											
PLA2G2F	64600	broad.mit.edu	37	chr1	20474573	20474573	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccgcccaggtaacacattCcaaggaccactgggctctcc	9	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20474573	A	A	20474573	1	1	4	0	1	0	0	0	0	0	0	0	12094	870	30	3		3	PLA2G2F	1	20474573	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	227762	20474573	228776048	35	2059											
SH2D5	400745	broad.mit.edu	37	chr1	21052590	21052590	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgtgaggcccccatcAgacccaccgggcagccccac	11	18	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21052590	T	T	21052590	1	4	4	0	1	0	0	0	0	0	0	0	14350	203	7	5		5	SH2D5	1	21052590	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	578017	21052590	228198031	36	2060											
EIF4G3	8672	broad.mit.edu	37	chr1	21191656	21191656	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcttctcaaagacatcatCatctgctttatctttttcaa	2	11	7	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21191656	G	G	21191656	3	3	4	1	0	0	0	0	1	0	0	0	5080	826	29	4	2271	4	EIF4G3	1	21191656	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	139066	21191656	228058965	37	2061											
HSPG2	3339	broad.mit.edu	37	chr1	22199989	22199989	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagggctgggctgagggccCcatattgaattcaatggcct	13	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22199989	G	G	22199989	1	3	4	0	1	0	0	0	0	0	0	0	7500	638	22	4		4	HSPG2	1	22199989	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1008333	22199989	227050632	38	2062											
MYOM3	127294	broad.mit.edu	37	chr1	24417265	24417265	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgactgatgttctagaaagtCgcttaggacctctgtaccca	9	10	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24417265	A	A	24417265	1	1	4	0	1	0	0	0	0	0	0	0	10187	899	31	3		3	MYOM3	1	24417265	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2217276	24417265	224833356	39	2063											
C1orf201	90529	broad.mit.edu	37	chr1	24700270	24700270	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccggctcgagtacagacgtTgtttctctgcttgcagcaag	11	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24700270	A	A	24700270	3	1	4	1	0	0	0	0	1	0	0	0	2047	1812	63	5	527	5	C1orf201	1	24700270	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	283005	24700270	224550351	40	2064											
SLC30A2	7780	broad.mit.edu	37	chr1	26370836	26370836	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttggtggctggccgggagGacatccagagggagaagagg	19	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26370836	C	C	26370836	1	2	4	0	1	0	0	0	0	0	0	0	14669	1174	41	4		4	SLC30A2	1	26370836	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1670566	26370836	222879785	41	2065											
CATSPER4	378807	broad.mit.edu	37	chr1	26526438	26526438	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttaccatcttcatcacCatcggtgccttcattggcat	5	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26526438	A	A	26526438	2	1	4	1	0	0	0	0	0	0	0	1	2716	581	21	2		2	CATSPER4	1	26526438	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	155602	26526438	222724183	42	2066											
ARID1A	8289	broad.mit.edu	37	chr1	27105667	27105667	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtctagtccagctcccatgGagggtggggaagaagaagaa	15	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27105667	T	T	27105667	4	4	4	1	0	0	0	0	0	1	0	0	915	1175	41	3	5356	3	ARID1A	1	27105667	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	579229	27105667	222144954	43	2067											
FAM46B	115572	broad.mit.edu	37	chr1	27332971	27332971	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagtccccgtacaggctttCgcctgtgaccgttgggtgga	14	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27332971	T	T	27332971	3	4	4	1	0	0	0	0	1	0	0	0	5617	893	31	4	539	4	FAM46B	1	27332971	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	227304	27332971	221917650	44	2068											
FAM46B	115572	broad.mit.edu	37	chr1	27333053	27333053	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacagggagtccaggatgatCtggaaggagtctatgctgaa	14	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27333053	A	A	27333053	3	1	4	1	0	0	0	0	1	0	0	0	5617	912	32	3	621	3	FAM46B	1	27333053	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	82	27333053	221917568	45	2069											
SPOCD1	90853	broad.mit.edu	37	chr1	32267221	32267221	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccactccaccccacctgAggcaagggagaaagaaaagc	9	15	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32267221	T	T	32267221	1	4	4	0	1	0	0	0	0	0	0	0	15196	319	11	5		5	SPOCD1	1	32267221	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	4934168	32267221	216983400	46	2070											
KPNA6	23633	broad.mit.edu	37	chr1	32626214	32626214	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttcattatccccttttcAggcagtctgggcactgggaa	10	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32626214	T	T	32626214	5	4	4	1	0	0	0	0	0	0	1	0	8505	202	7	5	583	5	KPNA6	1	32626214	Splice_Site	SNP	A	TCGA-05-4382-01A-01D-1265-08	358993	32626214	216624407	47	2071											
AK2	204	broad.mit.edu	37	chr1	33480187	33480187	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaacggccactcttggggTgaatcagcctgaaagacagc	13	10	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33480187	A	A	33480187	3	1	4	1	0	0	0	0	1	0	0	0	440	1696	59	5	302	5	AK2	1	33480187	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	853973	33480187	215770434	48	2072											
C1orf94	84970	broad.mit.edu	37	chr1	34667733	34667733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaacccgaagtacacagGgaatgttttcactccacact	7	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34667733	T	T	34667733	3	4	4	1	0	0	0	0	1	0	0	0	2093	1232	43	2	1333	2	C1orf94	1	34667733	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1187546	34667733	214582888	49	2073											
DLGAP3	58512	broad.mit.edu	37	chr1	35369813	35369813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacccaaccctttccactGctccctagttgacaagactg	5	18	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35369813	T	T	35369813	1	4	4	0	1	0	0	0	0	0	0	0	4601	1334	46	3		3	DLGAP3	1	35369813	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	702080	35369813	213880808	50	2074											
DLGAP3	58512	broad.mit.edu	37	chr1	35370074	35370074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttccgacccgcccgagCgccccttgaagctcaagtcc	10	19	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35370074	A	A	35370074	3	1	4	1	0	0	0	0	1	0	0	0	4601	768	27	3	2068	3	DLGAP3	1	35370074	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	261	35370074	213880547	51	2075											
GRIK3	2899	broad.mit.edu	37	chr1	37267485	37267485	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctaaggatgtgctgcaGgccatgctgtccttgccggg	17	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37267485	T	T	37267485	2	4	4	1	0	0	0	0	0	0	0	1	6841	987	35	2		2	GRIK3	1	37267485	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1897411	37267485	211983136	52	2076											
GRIK3	2899	broad.mit.edu	37	chr1	37291209	37291209	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggaattgccttacctggcGatgacgaagaggacacagct	12	9	0	2	rs138685291	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37291209	A	A	37291209	2	1	4	1	0	0	0	0	0	0	0	1	6841	1048	37	4		4	GRIK3	1	37291209	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	23724	37291209	211959412	53	2077											
GNL2	29889	broad.mit.edu	37	chr1	38034454	38034454	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagatgaaaatattacctGactgctgaaaactttttggc	8	6	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38034454	A	A	38034454	2	1	4	1	0	0	0	0	0	0	0	1	6600	1277	45	4		4	GNL2	1	38034454	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	743245	38034454	211216167	54	2078											
SF3A3	10946	broad.mit.edu	37	chr1	38446452	38446452	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtttctatttttggtatcTtgttattccctgcagaatat	8	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38446452	C	C	38446452	1	2	4	0	1	0	0	0	0	0	0	0	14261	1624	56	5		5	SF3A3	1	38446452	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	411998	38446452	210804169	55	2079											
GJA9	81025	broad.mit.edu	37	chr1	39340852	39340853	+	Nonsense_Mutation	DNP	GG	AA	AA													atgattgtcaggatttggctGgaatacagaagatgaattta							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	39340853	AA	AA	39340852	4	1	4	1	0	0	0	0	0	1	0	0	6470	1357	47	4	632	4	GJA9	1	39340852	Nonsense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	894400	39340852	209909769	56	2080											
MACF1	23499	broad.mit.edu	37	chr1	39888557	39888557	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tataaagtggtgaaagcacaGatccaagaacagaaggtaag	11	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39888557	A	A	39888557	2	1	4	1	0	0	0	0	0	0	0	1	9232	933	33	4		4	MACF1	1	39888557	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	547705	39888557	209362064	57	2081											
EDN2	1907	broad.mit.edu	37	chr1	41946715	41946715	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catagaaaatatgggaaatgTgcaaggcatacaggaggtgc	13	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41946715	A	A	41946715	1	1	4	0	1	0	0	0	0	0	0	0	4957	1711	59	5		5	EDN2	1	41946715	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2058158	41946715	207303906	58	2082											
CCDC30	728621	broad.mit.edu	37	chr1	43111812	43111812	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttttaaacttagaatcttAaggagtttcctgttccaaaa	6	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43111812	T	T	43111812	4	4	4	1	0	0	0	0	0	1	0	0	2832	363	13	5	1947	5	CCDC30	1	43111812	Nonsense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1165097	43111812	206138809	59	2083											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43637203	43637203	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacagctttctggtccttGttctgaggtgctggcgcctc	11	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43637203	A	A	43637203	2	1	4	1	0	0	0	0	0	0	0	1	4925	1368	48	4		4	EBNA1BP2	1	43637203	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	525391	43637203	205613418	60	2084											
MPL	4352	broad.mit.edu	37	chr1	43803815	43803815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagcccctgaagtgtttctCccgaacatttgaggacctca	9	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43803815	A	A	43803815	3	1	4	1	0	0	0	0	1	0	0	0	9824	855	30	3	131	3	MPL	1	43803815	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	166612	43803815	205446806	61	2085											
KDM4A	9682	broad.mit.edu	37	chr1	44133384	44133384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggagctaggacgtggGggtgagttggaagcagcaag	21	4	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44133384	T	T	44133384	1	4	4	0	1	0	0	0	0	0	0	0	8198	1247	43	2		2	KDM4A	1	44133384	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	329569	44133384	205117237	62	2086											
IPO13	9670	broad.mit.edu	37	chr1	44426701	44426701	+	Intron	DEL	G	-	-													gacaggtgggccttctggttGgggcagagatcctgaccctg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44426701	-	-	44426701	6	5	4	0	1	1	0	1	0	0	0	0	7864	1363	47	0		0	IPO13	1	44426701	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	293317	44426701	204823920	63	2087											
IPO13	9670	broad.mit.edu	37	chr1	44429990	44429990	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatttatgcaactcctggcAcaggtgtgttttagttttat	8	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44429990	C	C	44429990	2	2	4	1	0	0	0	0	0	0	0	1	7864	146	6	5		5	IPO13	1	44429990	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	3289	44429990	204820631	64	2088											
KLF17	128209	broad.mit.edu	37	chr1	44569349	44569349	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcacgcagctgccgcgccAtgtcctgcttggccggctgg	13	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44569349	T	T	44569349	1	4	4	0	1	0	0	0	0	0	0	0	8416	232	8	5		5	KLF17	1	44569349	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	139359	44569349	204681272	65	2089											
RPS8	6202	broad.mit.edu	37	chr1	45241098	45241098	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcggcagaggtcagcagCctgcgagaccctcctaggct	15	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45241098	A	A	45241098	1	1	4	0	1	0	0	0	0	0	0	0	13772	754	26	3		3	RPS8	1	45241098	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	671749	45241098	204009523	66	2090											
TSPAN1	10103	broad.mit.edu	37	chr1	46649794	46649794	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctcggctcccatccttctTactcagctgtgtggtagtaa	8	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46649794	A	A	46649794	1	1	4	0	1	0	0	0	0	0	0	0	16758	1769	61	5		5	TSPAN1	1	46649794	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1408696	46649794	202600827	67	2091											
DMBX1	127343	broad.mit.edu	37	chr1	46972667	46972667	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccctctcccttttccgtctGtaggcggatgccgccatgca	9	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46972667	C	C	46972667	1	2	4	0	1	0	0	0	0	0	0	0	4618	1392	48	4		4	DMBX1	1	46972667	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	322873	46972667	202277954	68	2092											
SPATA6	54558	broad.mit.edu	37	chr1	48901970	48901970	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagaaagccgtgattctatCccactttttccggcatccca	6	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48901970	A	A	48901970	1	1	4	0	1	0	0	0	0	0	0	0	15129	870	30	3		3	SPATA6	1	48901970	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1929303	48901970	200348651	69	2093											
ZCCHC11	23318	broad.mit.edu	37	chr1	52961256	52961256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgtaaaaaaacagcgaCgggaaaatttcacacacttc	8	8	1	1	rs114498228	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52961256	A	A	52961256	1	1	4	0	1	0	0	0	0	0	0	0	17706	551	19	3		3	ZCCHC11	1	52961256	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4059286	52961256	196289365	70	2094											
SLC1A7	6512	broad.mit.edu	37	chr1	53556224	53556224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctcaagtctgggagcctGggaatccccaaggcccccag	11	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53556224	T	T	53556224	1	4	4	0	1	0	0	0	0	0	0	0	14550	1363	47	2		2	SLC1A7	1	53556224	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	594968	53556224	195694397	71	2095											
DMRTB1	63948	broad.mit.edu	37	chr1	53925146	53925146	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggccgacaaaatggtgcGcacccccaagtgctcgagat	11	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53925146	T	T	53925146	3	4	4	1	0	0	0	0	1	0	0	0	4630	1087	38	3	22	3	DMRTB1	1	53925146	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	368922	53925146	195325475	72	2096											
DMRTB1	63948	broad.mit.edu	37	chr1	53932273	53932273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtccttcacagatgacCaggatgcagaggtactgtcg	11	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53932273	A	A	53932273	3	1	4	1	0	0	0	0	1	0	0	0	4630	595	21	2	981	2	DMRTB1	1	53932273	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7127	53932273	195318348	73	2097											
TMEM48	55706	broad.mit.edu	37	chr1	54259012	54259012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattctattcaaatataaCacatttcctagttcttccag	2	9	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54259012	A	A	54259012	1	1	4	0	1	0	0	0	0	0	0	0	16295	493	17	3		3	TMEM48	1	54259012	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	326739	54259012	194991609	74	2098											
HSPB11	51668	broad.mit.edu	37	chr1	54405720	54405720	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagctaaaatcacttcggaCccttcagagctcagacagag	9	11	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54405720	A	A	54405720	2	1	4	1	0	0	0	0	0	0	0	1	7488	494	18	3		3	HSPB11	1	54405720	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	146708	54405720	194844901	75	2099											
CDCP2	200008	broad.mit.edu	37	chr1	54610303	54610303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggccccattgtagatctccAgaaagtcgaagctgcaggtg	12	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54610303	T	T	54610303	3	4	4	1	0	0	0	0	1	0	0	0	3124	188	7	5	1098	5	CDCP2	1	54610303	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	204583	54610303	194640318	76	2100											
BSND	7809	broad.mit.edu	37	chr1	55464866	55464866	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggccaggcagccatggctGacgagaagaccttccggatc	13	13	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55464866	T	T	55464866	3	4	4	1	0	0	0	0	1	0	0	0	1540	1290	45	3	9	3	BSND	1	55464866	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	854563	55464866	193785755	77	2101											
C8B	732	broad.mit.edu	37	chr1	57411562	57411562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccccaagcacagcctctGtgatgtagtgggtcccaaaa	10	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57411562	T	T	57411562	3	4	4	1	0	0	0	0	1	0	0	0	2442	1377	48	3	762	3	C8B	1	57411562	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1946696	57411562	191839059	78	2102											
C8B	732	broad.mit.edu	37	chr1	57420643	57420643	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcatcctgtatccagataGattggttatggcactaacag	9	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57420643	A	A	57420643	1	1	4	0	1	0	0	0	0	0	0	0	2442	957	33	4		4	C8B	1	57420643	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	9081	57420643	191829978	79	2103											
DAB1	1600	broad.mit.edu	37	chr1	58514663	58514663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatacctttttcacagttaaGtgggcacctggtctttggga	10	8	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514663	A	A	58514663	1	1	4	0	1	0	0	0	0	0	0	0	4250	1044	36	4		4	DAB1	1	58514663	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1094020	58514663	190735958	80	2104											
HOOK1	51361	broad.mit.edu	37	chr1	60328550	60328550	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtctgaaggcgaaagtGtaagtaacttagaaattata	9	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60328550	T	T	60328550	5	4	4	1	0	0	0	0	0	0	1	0	7349	1391	48	3	1689	3	HOOK1	1	60328550	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	1813887	60328550	188922071	81	2105											
INADL	10207	broad.mit.edu	37	chr1	62582842	62582842	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagctagagattggaagactCcgagctggttcctggacctc	12	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62582842	G	G	62582842	2	3	4	1	0	0	0	0	0	0	0	1	7801	842	30	4		4	INADL	1	62582842	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2254292	62582842	186667779	82	2106											
CACHD1	57685	broad.mit.edu	37	chr1	65142538	65142538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgagtttggaatgtggGcggtggtcgtcttaacctcc	14	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65142538	T	T	65142538	1	4	4	0	1	0	0	0	0	0	0	0	2563	1218	42	3		3	CACHD1	1	65142538	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2559696	65142538	184108083	83	2107											
JAK1	3716	broad.mit.edu	37	chr1	65339033	65339033	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccacaaactccagcttctCctgggcccaaacttcctacc	4	19	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65339033	A	A	65339033	1	1	4	0	1	0	0	0	0	0	0	0	8007	870	30	3		3	JAK1	1	65339033	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	196495	65339033	183911588	84	2108											
LEPR	3953	broad.mit.edu	37	chr1	66036121	66036121	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcttagtcaaaatgattActtttttctatgtgtctttt	5	5	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66036121	T	T	66036121	1	4	4	0	1	0	0	0	0	0	0	0	8800	406	14	5		5	LEPR	1	66036121	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	697088	66036121	183214500	85	2109											
LEPR	3953	broad.mit.edu	37	chr1	66043467	66043467	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattgttttggaaatggtccAtggggtccaggccccttgag	13	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66043467	T	T	66043467	1	4	4	0	1	0	0	0	0	0	0	0	8800	232	8	5		5	LEPR	1	66043467	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	7346	66043467	183207154	86	2110											
SGIP1	84251	broad.mit.edu	37	chr1	67126301	67126301	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgactgactgtgtttaacaCctaaacaaggttttgaactt	7	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67126301	T	T	67126301	1	4	4	0	1	0	0	0	0	0	0	0	14319	522	18	4		4	SGIP1	1	67126301	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1082834	67126301	182124320	87	2111											
SGIP1	84251	broad.mit.edu	37	chr1	67205272	67205272	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcctctgggtcaagaggtCacagactccttagcacttgc	10	13	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67205272	A	A	67205272	1	1	4	0	1	0	0	0	0	0	0	0	14319	841	29	3		3	SGIP1	1	67205272	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	78971	67205272	182045349	88	2112											
IL23R	149233	broad.mit.edu	37	chr1	67705857	67705857	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattatttttctttcctttcAttagacaacagaggagacat	5	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67705857	T	T	67705857	1	4	4	0	1	0	0	0	0	0	0	0	7746	232	8	5		5	IL23R	1	67705857	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	500585	67705857	181544764	89	2113											
IL23R	149233	broad.mit.edu	37	chr1	67705957	67705957	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatatttaacagatcattcCgaactgggtaggtttttgca	10	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67705957	A	A	67705957	2	1	4	1	0	0	0	0	0	0	0	1	7746	644	23	1		1	IL23R	1	67705957	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	100	67705957	181544664	90	2114											
IL12RB2	3595	broad.mit.edu	37	chr1	67816660	67816660	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatcacaggacacacctcCtggaccacagtcattcctag	6	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67816660	T	T	67816660	2	4	4	1	0	0	0	0	0	0	0	1	7697	668	24	4		4	IL12RB2	1	67816660	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	110703	67816660	181433961	91	2115											
RPE65	6121	broad.mit.edu	37	chr1	68896885	68896885	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgagaaagaaaaatcaatCaagcaatcagtcaatatgct	7	6	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68896885	A	A	68896885	1	1	4	0	1	0	0	0	0	0	0	0	13656	841	29	3		3	RPE65	1	68896885	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1080225	68896885	180353736	92	2116											
LRRC7	57554	broad.mit.edu	37	chr1	70460342	70460342	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccaacttttcattccagtCtgcctctcaaaagccagaaa	5	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70460342	A	A	70460342	1	1	4	0	1	0	0	0	0	0	0	0	9107	928	32	3		3	LRRC7	1	70460342	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1563457	70460342	178790279	93	2117											
LRRC7	57554	broad.mit.edu	37	chr1	70502017	70502017	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattctatacaaatgttttAcaaatatgcatttctaacct	2	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70502017	T	T	70502017	1	4	4	0	1	0	0	0	0	0	0	0	9107	406	14	5		5	LRRC7	1	70502017	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	41675	70502017	178748604	94	2118											
TNNI3K	51086	broad.mit.edu	37	chr1	74663917	74663917	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accgggcggaggcgcaccccAgggcgcatgcgtgctgtgcg	18	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74663917	T	T	74663917	1	4	4	0	1	0	0	0	0	0	0	0	16452	203	7	5		5	TNNI3K	1	74663917	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	4161900	74663917	174586704	95	2119											
TNNI3K	51086	broad.mit.edu	37	chr1	74716289	74716289	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatggcatttatcattaggTcaaaaagagtctcaaactca	7	7	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74716289	G	G	74716289	1	3	4	0	1	0	0	0	0	0	0	0	16452	1682	58	5		5	TNNI3K	1	74716289	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	52372	74716289	174534332	96	2120											
TNNI3K	51086	broad.mit.edu	37	chr1	74957895	74957895	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtggcagcattaagaagtCgtttcgaattggaatatgct	11	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74957895	T	T	74957895	3	4	4	1	0	0	0	0	1	0	0	0	16452	884	31	4	2741	4	TNNI3K	1	74957895	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	241606	74957895	174292726	97	2121											
ACADM	34	broad.mit.edu	37	chr1	76205759	76205759	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagtatattattaatggtcAgaagatgtggataaccaacg	10	4	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76205759	T	T	76205759	3	4	4	1	0	0	0	0	1	0	0	0	113	188	7	5	601	5	ACADM	1	76205759	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1247864	76205759	173044862	98	2122											
RABGGTB	5876	broad.mit.edu	37	chr1	76251968	76251968	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgttagacatggtaagtgtGagtttagcgctgctgtccgg	14	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76251968	T	T	76251968	1	4	4	0	1	0	0	0	0	0	0	0	13076	1305	45	3		3	RABGGTB	1	76251968	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	46209	76251968	172998653	99	2123											
RABGGTB	5876	broad.mit.edu	37	chr1	76254898	76254898	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatctattggggtctgacaGtaatggatctcatgggacaa	12	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76254898	A	A	76254898	3	1	4	1	0	0	0	0	1	0	0	0	13076	1029	36	4	176	4	RABGGTB	1	76254898	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2930	76254898	172995723	100	2124											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76779636	76779636	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattctcctacacatacagGcggccccttcgaactcacta	5	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76779636	T	T	76779636	3	4	4	1	0	0	0	0	1	0	0	0	15343	1194	42	3	171	3	ST6GALNAC3	1	76779636	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	524738	76779636	172470985	101	2125											
FAM73A	374986	broad.mit.edu	37	chr1	78277407	78277407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccccaagagtcgaagtcGgcgcctctcctaaaactggc	11	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78277407	T	T	78277407	1	4	4	0	1	0	0	0	0	0	0	0	5668	1131	39	1		1	FAM73A	1	78277407	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1497771	78277407	170973214	102	2126											
ELTD1	64123	broad.mit.edu	37	chr1	79357397	79357397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatcacatatgagaaatgCgtcagtgaagaaagctacgt	9	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79357397	A	A	79357397	1	1	4	0	1	0	0	0	0	0	0	0	5126	783	27	3		3	ELTD1	1	79357397	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1079990	79357397	169893224	103	2127											
LPHN2	23266	broad.mit.edu	37	chr1	81969161	81969161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtccctctgatgggcaGgacccagctttccacttgcc	11	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81969161	T	T	81969161	1	4	4	0	1	0	0	0	0	0	0	0	9003	1015	35	2		2	LPHN2	1	81969161	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2611764	81969161	167281460	104	2128											
LPHN2	23266	broad.mit.edu	37	chr1	82436173	82436173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttcctgccacagtggttgGagtttcagctgctattgact	11	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82436173	T	T	82436173	3	4	4	1	0	0	0	0	1	0	0	0	9003	1174	41	3	2908	3	LPHN2	1	82436173	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	467012	82436173	166814448	105	2129											
LPHN2	23266	broad.mit.edu	37	chr1	82456310	82456310	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcgagctcacgctaccagtCaaacctgtgattggaggtag	11	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82456310	G	G	82456310	2	3	4	1	0	0	0	0	0	0	0	1	9003	813	29	4		4	LPHN2	1	82456310	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	20137	82456310	166794311	106	2130											
SYDE2	84144	broad.mit.edu	37	chr1	85656358	85656358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttaagtggcttatgacCtctgaattcaatattatcct	7	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85656358	A	A	85656358	3	1	4	1	0	0	0	0	1	0	0	0	15555	681	24	2	2785	2	SYDE2	1	85656358	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3200048	85656358	163594263	107	2131											
CLCA2	9635	broad.mit.edu	37	chr1	86894089	86894089	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagtattacaaggcatttCttttaatttaggcaaatgtc	7	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86894089	A	A	86894089	1	1	4	0	1	0	0	0	0	0	0	0	3489	928	32	3		3	CLCA2	1	86894089	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1237731	86894089	162356532	108	2132											
CLCA2	9635	broad.mit.edu	37	chr1	86921274	86921274	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccttcgactacaaaaacatActaacaaagtcaaattaaca	3	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86921274	T	T	86921274	1	4	4	0	1	0	0	0	0	0	0	0	3489	406	14	5		5	CLCA2	1	86921274	3'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	27185	86921274	162329347	109	2133											
SH3GLB1	51100	broad.mit.edu	37	chr1	87208780	87208780	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtttatttttttaatgtAgttaataactggaagtattt	6	2	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87208780	T	T	87208780	1	4	4	0	1	0	0	0	0	0	0	0	14366	435	15	5		5	SH3GLB1	1	87208780	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	287506	87208780	162041841	110	2134											
GBP3	2635	broad.mit.edu	37	chr1	89476451	89476451	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atataacagtctccctccctGcatatgttattgaatgaaag	6	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89476451	C	C	89476451	1	2	4	0	1	0	0	0	0	0	0	0	6337	1334	46	4		4	GBP3	1	89476451	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2267671	89476451	159774170	111	2135											
GBP4	115361	broad.mit.edu	37	chr1	89654458	89654458	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcagcacaaagtctcccTtctttttctctatggtgtcc	6	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89654458	G	G	89654458	3	3	4	1	0	0	0	0	1	0	0	0	6338	1609	56	5	721	5	GBP4	1	89654458	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	178007	89654458	159596163	112	2136											
GBP6	163351	broad.mit.edu	37	chr1	89849270	89849270	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgatagaggaatccatcttGcagtcagataaagccctcac	9	10	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89849270	C	C	89849270	3	2	4	1	0	0	0	0	1	0	0	0	6340	1310	46	4	1455	4	GBP6	1	89849270	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	194812	89849270	159401351	113	2137											
HFM1	164045	broad.mit.edu	37	chr1	91793930	91793930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccagtcatccctcctctGtgttgccatgggtattcaag	10	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91793930	T	T	91793930	1	4	4	0	1	0	0	0	0	0	0	0	7150	1392	48	3		3	HFM1	1	91793930	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1944660	91793930	157456691	114	2138											
HFM1	164045	broad.mit.edu	37	chr1	91818090	91818090	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgaccagctctaccaatcatCtgtagaatatctgtttcact	5	12	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91818090	T	T	91818090	2	4	4	1	0	0	0	0	0	0	0	1	7150	912	32	4		4	HFM1	1	91818090	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	24160	91818090	157432531	115	2139											
GLMN	11146	broad.mit.edu	37	chr1	92756866	92756866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaacgagttcctttctgCatgtactttcatgaaccaaa	5	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92756866	A	A	92756866	1	1	4	0	1	0	0	0	0	0	0	0	6512	725	25	3		3	GLMN	1	92756866	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	938776	92756866	156493755	116	2140											
FAM69A	388650	broad.mit.edu	37	chr1	93341943	93341943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaacaaaaaccactaaCcaggaaaagaaaagatattt	4	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93341943	A	A	93341943	3	1	4	1	0	0	0	0	1	0	0	0	5653	508	18	3	1203	3	FAM69A	1	93341943	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	585077	93341943	155908678	117	2141											
FAM69A	388650	broad.mit.edu	37	chr1	93396969	93396969	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggaaacattttttaaaaCaaaagatgtatttcaattaa	5	3	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93396969	T	T	93396969	1	4	4	0	1	0	0	0	0	0	0	0	5653	493	17	4		4	FAM69A	1	93396969	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	55026	93396969	155853652	118	2142											
CCDC18	343099	broad.mit.edu	37	chr1	93691946	93691946	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagaacttgtcttgcatttGaatcaattggaaggaaataa	9	4	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93691946	C	C	93691946	3	2	4	1	0	0	0	0	1	0	0	0	2821	1281	45	4	2652	4	CCDC18	1	93691946	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	294977	93691946	155558675	119	2143											
ABCA4	24	broad.mit.edu	37	chr1	94574175	94574175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggagggtgtccatgaattGggacaagatgtgtagctctg	15	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94574175	T	T	94574175	3	4	4	1	0	0	0	0	1	0	0	0	34	1357	47	2	6609	2	ABCA4	1	94574175	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	882229	94574175	154676446	120	2144											
LPPR4	9890	broad.mit.edu	37	chr1	99772270	99772270	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacttacgagctcaacgatCtcaacagggactcagaaagc	8	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99772270	G	G	99772270	3	3	4	1	0	0	0	0	1	0	0	0	9014	913	32	4	2022	4	LPPR4	1	99772270	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	5198095	99772270	149478351	121	2145											
FRRS1	391059	broad.mit.edu	37	chr1	100183082	100183082	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacaaacattaaggcacCtacaagtgagataaatgcaa	7	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100183082	A	A	100183082	5	1	4	1	0	0	0	0	0	0	1	0	6120	695	24	2	788	2	FRRS1	1	100183082	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	410812	100183082	149067539	122	2146											
DBT	1629	broad.mit.edu	37	chr1	100676590	100676590	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagattttcaaaataatgatAcagaccagccaaagttccaa	6	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100676590	G	G	100676590	1	3	4	0	1	0	0	0	0	0	0	0	4291	406	14	5		5	DBT	1	100676590	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	493508	100676590	148574031	123	2147											
CDC14A	8556	broad.mit.edu	37	chr1	100961533	100961533	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtgtgccctggtgatatgtGagcatctgtctttgatttcc	11	9	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100961533	T	T	100961533	1	4	4	0	1	0	0	0	0	0	0	0	3086	1305	45	3		3	CDC14A	1	100961533	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	284943	100961533	148289088	124	2148											
COL11A1	1301	broad.mit.edu	37	chr1	103399945	103399945	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactttgttttacatccaccAgaaaacctggtgagaagtag	8	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103399945	C	C	103399945	1	2	4	0	1	0	0	0	0	0	0	0	3699	203	7	5		5	COL11A1	1	103399945	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2438412	103399945	145850676	125	2149											
COL11A1	1301	broad.mit.edu	37	chr1	103453205	103453205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccttttctcctgcttgaCctgaaggacctgggtctcca	8	14	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103453205	A	A	103453205	3	1	4	1	0	0	0	0	1	0	0	0	3699	507	18	3	3086	3	COL11A1	1	103453205	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	53260	103453205	145797416	126	2150											
AMY2B	280	broad.mit.edu	37	chr1	104115874	104115874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcgagaactacaatgatGctactcaggtaaattttttt	6	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104115874	T	T	104115874	3	4	4	1	0	0	0	0	1	0	0	0	595	1319	46	3	515	3	AMY2B	1	104115874	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	662669	104115874	145134747	127	2151											
VAV3	10451	broad.mit.edu	37	chr1	108299900	108299900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttcatggcatcaagagCcagtttcagatttgccttct	7	11	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108299900	A	A	108299900	3	1	4	1	0	0	0	0	1	0	0	0	17260	739	26	3	1567	3	VAV3	1	108299900	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4184026	108299900	140950721	128	2152											
FNDC7	163479	broad.mit.edu	37	chr1	109270513	109270513	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtctcctgtccgtggtgccGaactgtatgaaaccaaggct	12	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109270513	T	T	109270513	4	4	4	1	0	0	0	0	0	1	0	0	6031	1059	37	3	1221	3	FNDC7	1	109270513	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	970613	109270513	139980108	129	2153											
KIAA1324	57535	broad.mit.edu	37	chr1	109714467	109714467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctcctgcctgtgaacCtggttcctgttccttcacag	9	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109714467	A	A	109714467	1	1	4	0	1	0	0	0	0	0	0	0	8293	696	24	2		2	KIAA1324	1	109714467	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	443954	109714467	139536154	130	2154											
ATXN7L2	127002	broad.mit.edu	37	chr1	110033152	110033152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcaggaccccagataGggagtagcatgaaaaggagg	15	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110033152	T	T	110033152	1	4	4	0	1	0	0	0	0	0	0	0	1221	1015	35	2		2	ATXN7L2	1	110033152	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	318685	110033152	139217469	131	2155											
EPS8L3	79574	broad.mit.edu	37	chr1	110294416	110294416	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccagaacctgccaagagtCaccacctcagtcccctgagc	8	17	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110294416	T	T	110294416	1	4	4	0	1	0	0	0	0	0	0	0	5239	841	29	4		4	EPS8L3	1	110294416	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	261264	110294416	138956205	132	2156											
PROK1	84432	broad.mit.edu	37	chr1	110996662	110996662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgagggctgcggatgtgcaCcccgctggggcgggaaggcg	20	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110996662	A	A	110996662	3	1	4	1	0	0	0	0	1	0	0	0	12656	507	18	3	158	3	PROK1	1	110996662	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	702246	110996662	138253959	133	2157											
KCNA10	3744	broad.mit.edu	37	chr1	111060306	111060306	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactcccgcatggacgccttCagtgtttgcccgaggatctg	11	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111060306	T	T	111060306	2	4	4	1	0	0	0	0	0	0	0	1	8072	813	29	4		4	KCNA10	1	111060306	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	63644	111060306	138190315	134	2158											
HIPK1	204851	broad.mit.edu	37	chr1	114508811	114508812	+	Frame_Shift_Ins	INS	-	G	G													caacttggcaacagttgcctINSggggtagctctacacaactc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114508812	G	G	114508811	7	5	4	1	0	1	1	0	0	0	0	0	7183	1567	55	0	2354	0	HIPK1	1	114508811	Frame_Shift_Ins	INS	-	TCGA-05-4382-01A-01D-1265-08	3448505	114508811	134741810	135	2159											
HIPK1	204851	broad.mit.edu	37	chr1	114514364	114514364	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcttgcaaactacatacaGatgtggactaattaatatga	7	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114514364	T	T	114514364	1	4	4	0	1	0	0	0	0	0	0	0	7183	957	33	3		3	HIPK1	1	114514364	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5553	114514364	134736257	136	2160											
OLFML3	56944	broad.mit.edu	37	chr1	114522082	114522082	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagctaaccctcgggcttGaggggaagaggctgactgta	14	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114522082	T	T	114522082	1	4	4	0	1	0	0	0	0	0	0	0	10954	1305	45	3		3	OLFML3	1	114522082	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	7718	114522082	134728539	137	2161											
SYT6	148281	broad.mit.edu	37	chr1	114680353	114680353	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccgggtctgcagcttgcAtttgcggtcaggcaggaggt	15	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114680353	C	C	114680353	3	2	4	1	0	0	0	0	1	0	0	0	15597	217	8	5	717	5	SYT6	1	114680353	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	158271	114680353	134570268	138	2162											
CSDE1	7812	broad.mit.edu	37	chr1	115276249	115276249	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggtccttagttgttccacTaccacattatattaactgaa	6	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115276249	A	A	115276249	1	1	4	0	1	0	0	0	0	0	0	0	3963	1537	53	5		5	CSDE1	1	115276249	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	595896	115276249	133974372	139	2163											
SYCP1	6847	broad.mit.edu	37	chr1	115523985	115523985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatttttattggaaacacCtgaaatttattggaaattgg	7	4	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115523985	A	A	115523985	3	1	4	1	0	0	0	0	1	0	0	0	15550	681	24	2	2521	2	SYCP1	1	115523985	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	247736	115523985	133726636	140	2164											
IGSF3	3321	broad.mit.edu	37	chr1	117131682	117131682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatgggcttgttttccaCcagggtgagggtcctcttcg	13	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117131682	A	A	117131682	3	1	4	1	0	0	0	0	1	0	0	0	7671	507	18	3	1526	3	IGSF3	1	117131682	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1607697	117131682	132118939	141	2165											
IGSF3	3321	broad.mit.edu	37	chr1	117150557	117150557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagcagcacatctctcTacttactgagggggaggact	11	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117150557	A	A	117150557	1	1	4	0	1	0	0	0	0	0	0	0	7671	1537	53	5		5	IGSF3	1	117150557	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	18875	117150557	132100064	142	2166											
PTGFRN	5738	broad.mit.edu	37	chr1	117527322	117527322	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgacatggcctttgatgtgTcctggtttgcggtgcactct	12	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117527322	C	C	117527322	3	2	4	1	0	0	0	0	1	0	0	0	12856	1667	58	5	2218	5	PTGFRN	1	117527322	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	376765	117527322	131723299	143	2167											
MAN1A2	10905	broad.mit.edu	37	chr1	118041958	118041958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagtccttgcaaacaaaCataaatggtttattttgctc	6	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118041958	A	A	118041958	1	1	4	0	1	0	0	0	0	0	0	0	9303	493	17	3		3	MAN1A2	1	118041958	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	514636	118041958	131208663	144	2168											
HSD3B2	3284	broad.mit.edu	37	chr1	119958100	119958100	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggtcagaggatcgtcCgcctgttggtggaagagaag	16	7	2	2	rs139191056		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119958100	T	T	119958100	3	4	4	1	0	0	0	0	1	0	0	0	7458	652	23	4	60	4	HSD3B2	1	119958100	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1916142	119958100	129292521	145	2169											
HSD3B2	3284	broad.mit.edu	37	chr1	119987819	119987819	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgcacttgggagtggggaGtggggcacatggatctgttc	17	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119987819	C	C	119987819	1	2	4	0	1	0	0	0	0	0	0	0	7458	1044	36	4		4	HSD3B2	1	119987819	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	29719	119987819	129262802	146	2170											
NOTCH2	4853	broad.mit.edu	37	chr1	120478159	120478159	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaatacaggtgcctccattCtggcagggctgattctggca	11	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120478159	T	T	120478159	2	4	4	1	0	0	0	0	0	0	0	1	10643	912	32	4		4	NOTCH2	1	120478159	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	490340	120478159	128772462	147	2171											
NBPF9	400818	broad.mit.edu	37	chr1	144815037	144815037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgacaaggacttcttgGgtaagaacggagatgggaaa	14	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144815037	T	T	144815037	1	4	4	0	1	0	0	0	0	0	0	0	10294	1247	43	2		2	NBPF9	1	144815037	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	24336878	144815037	104435584	148	2172											
NBPF9	400818	broad.mit.edu	37	chr1	145075573	145075573	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcaccgtgcgttgccaccCccatcgcgttcctcagcctc	9	20	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145075573	T	T	145075573	1	4	4	0	1	0	0	0	0	0	0	0	10294	638	22	4		4	NBPF9	1	145075573	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	260536	145075573	104175048	149	2173											
TXNIP	10628	broad.mit.edu	37	chr1	145439780	145439780	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcattttcttgacacaggcCtctgggaacatccttcaaag	7	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145439780	G	G	145439780	3	3	4	1	0	0	0	0	1	0	0	0	16929	681	24	4	336	4	TXNIP	1	145439780	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	364207	145439780	103810841	150	2174											
TXNIP	10628	broad.mit.edu	37	chr1	145439809	145439809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccttcaaaggaaaatatGggtgtgtagactactgggtg	12	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145439809	T	T	145439809	3	4	4	1	0	0	0	0	1	0	0	0	16929	1348	47	2	365	2	TXNIP	1	145439809	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	29	145439809	103810812	151	2175											
ITGA10	8515	broad.mit.edu	37	chr1	145538885	145538885	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaaaaggatgggaagggtCtctcttggattttaatggta	15	3	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145538885	G	G	145538885	1	3	4	0	1	0	0	0	0	0	0	0	7943	928	32	4		4	ITGA10	1	145538885	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	99076	145538885	103711736	152	2176											
ITGA10	8515	broad.mit.edu	37	chr1	145539090	145539090	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctcaagtcatcactaaCaatgtgagtctggtctagga	9	9	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145539090	T	T	145539090	2	4	4	1	0	0	0	0	0	0	0	1	7943	477	17	4		4	ITGA10	1	145539090	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	205	145539090	103711531	153	2177											
ANKRD35	148741	broad.mit.edu	37	chr1	145563069	145563069	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagagaagatggagcatctCattggggcttgccgagacaa	13	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145563069	A	A	145563069	2	1	4	1	0	0	0	0	0	0	0	1	664	813	29	3		3	ANKRD35	1	145563069	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	23979	145563069	103687552	154	2178											
SV2A	9900	broad.mit.edu	37	chr1	149879434	149879434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccgtcatcctcatgcccCctccaagactcactctttag	4	20	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149879434	T	T	149879434	1	4	4	0	1	0	0	0	0	0	0	0	15535	638	22	4		4	SV2A	1	149879434	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4316365	149879434	99371187	155	2179											
OTUD7B	56957	broad.mit.edu	37	chr1	149916312	149916312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggctggaggagggccaCcccctattcctccattcatg	10	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149916312	A	A	149916312	3	1	4	1	0	0	0	0	1	0	0	0	11413	507	18	3	559	3	OTUD7B	1	149916312	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	36878	149916312	99334309	156	2180											
VPS45	11311	broad.mit.edu	37	chr1	150040772	150040772	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgcattgattctcaaaatcGagagatcatgaaacacctga	7	9	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150040772	A	A	150040772	3	1	4	1	0	0	0	0	1	0	0	0	17338	1058	37	4	185	4	VPS45	1	150040772	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	124460	150040772	99209849	157	2181											
CTSK	1513	broad.mit.edu	37	chr1	150779315	150779315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagttagggaaaactcttcCatttggcagggaaacagagg	13	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150779315	A	A	150779315	1	1	4	0	1	0	0	0	0	0	0	0	4071	609	21	2		2	CTSK	1	150779315	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	738543	150779315	98471306	158	2182											
SCNM1	79005	broad.mit.edu	37	chr1	151139074	151139074	+	Intron	DEL	T	-	-													cggttagaggctcaatagacTtttttttttttttcctttga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151139074	-	-	151139074	6	5	4	0	1	1	0	1	0	0	0	0	14039	1624	56	0		0	SCNM1	1	151139074	Intron	DEL	T	TCGA-05-4382-01A-01D-1265-08	359759	151139074	98111547	159	2183											
VPS72	6944	broad.mit.edu	37	chr1	151149508	151149508	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgagggagcaggatcaagtCtgaggacaaaagacaaggaa	14	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151149508	A	A	151149508	1	1	4	0	1	0	0	0	0	0	0	0	17344	927	32	3		3	VPS72	1	151149508	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	10434	151149508	98101113	160	2184											
PSMD4	5710	broad.mit.edu	37	chr1	151239025	151239025	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcggaatcagcagacattGatgccagctcagctatggac	12	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151239025	T	T	151239025	3	4	4	1	0	0	0	0	1	0	0	0	12806	1290	45	3	959	3	PSMD4	1	151239025	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	89517	151239025	98011596	161	2185											
THEM4	117145	broad.mit.edu	37	chr1	151867517	151867517	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgaagtcttgaatccattCagtaggtgtacgtttatatg	9	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151867517	T	T	151867517	3	4	4	1	0	0	0	0	1	0	0	0	15981	835	29	4	489	4	THEM4	1	151867517	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	628492	151867517	97383104	162	2186											
TCHH	7062	broad.mit.edu	37	chr1	152080784	152080784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcacgctcttggcggtGcagctgctgttcttcccttt	10	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152080784	T	T	152080784	3	4	4	1	0	0	0	0	1	0	0	0	15822	1319	46	3	926	3	TCHH	1	152080784	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	213267	152080784	97169837	163	2187											
HRNR	388697	broad.mit.edu	37	chr1	152192277	152192277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagaaccatgttgcccatGggtagaggaatgacccgagc	13	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152192277	T	T	152192277	3	4	4	1	0	0	0	0	1	0	0	0	7426	1348	47	2	6728	2	HRNR	1	152192277	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	111493	152192277	97058344	164	2188											
FLG	2312	broad.mit.edu	37	chr1	152279055	152279055	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctggagctgtcttgtgcCtgctcatggcgggatccttg	14	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279055	T	T	152279055	2	4	4	1	0	0	0	0	0	0	0	1	5979	680	24	4		4	FLG	1	152279055	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	86778	152279055	96971566	165	2189											
FLG	2312	broad.mit.edu	37	chr1	152282354	152282354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgaccttgcctgttcctGggatgatgcagcctgtccac	10	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152282354	T	T	152282354	3	4	4	1	0	0	0	0	1	0	0	0	5979	1357	47	2	7181	2	FLG	1	152282354	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3299	152282354	96968267	166	2190											
FLG	2312	broad.mit.edu	37	chr1	152283677	152283677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccctgagtgcctggagcCgtctcctgattgtttgtcct	11	12	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283677	A	A	152283677	3	1	4	1	0	0	0	0	1	0	0	0	5979	652	23	1	8504	1	FLG	1	152283677	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1323	152283677	96966944	167	2191											
FLG2	388698	broad.mit.edu	37	chr1	152326453	152326453	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactgttctcactttggctaGatcttcgtcttctagttacc	6	12	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152326453	T	T	152326453	3	4	4	1	0	0	0	0	1	0	0	0	5980	942	33	3	3370	3	FLG2	1	152326453	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	42776	152326453	96924168	168	2192											
LCE2B	26239	broad.mit.edu	37	chr1	152659626	152659626	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctgggggctctggctgcTgccacagctctgggggctgc	16	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152659626	A	A	152659626	3	1	4	1	0	0	0	0	1	0	0	0	8738	1580	55	5	309	5	LCE2B	1	152659626	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	333173	152659626	96590995	169	2193											
KPRP	448834	broad.mit.edu	37	chr1	152732303	152732303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccagtctaagaccaagcAggtgaagggccaggctcaat	13	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152732303	T	T	152732303	3	4	4	1	0	0	0	0	1	0	0	0	8507	188	7	5	241	5	KPRP	1	152732303	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	72677	152732303	96518318	170	2194											
LCE1E	353135	broad.mit.edu	37	chr1	152759971	152759971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggctccagctctgggGgctgctgcagctctggggga	18	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152759971	T	T	152759971	3	4	4	1	0	0	0	0	1	0	0	0	8735	1232	43	2	198	2	LCE1E	1	152759971	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	27668	152759971	96490650	171	2195											
LCE1C	353133	broad.mit.edu	37	chr1	152777761	152777761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagaactgcagcatcccCcagagctggagccacagctg	10	17	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152777761	A	A	152777761	3	1	4	1	0	0	0	0	1	0	0	0	8733	623	22	2	166	2	LCE1C	1	152777761	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	17790	152777761	96472860	172	2196											
S100A8	6279	broad.mit.edu	37	chr1	153362552	153362552	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtacatgtccagggGcccagcctctgggcccagta	13	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153362552	T	T	153362552	1	4	4	0	1	0	0	0	0	0	0	0	13897	1218	42	3		3	S100A8	1	153362552	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	584791	153362552	95888069	173	2197											
GATAD2B	57459	broad.mit.edu	37	chr1	153800325	153800325	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagcagtttttgaggcaccTggtttcatttggaaataaaa	9	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153800325	A	A	153800325	1	1	4	0	1	0	0	0	0	0	0	0	6323	1595	55	5		5	GATAD2B	1	153800325	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	437773	153800325	95450296	174	2198											
CRTC2	200186	broad.mit.edu	37	chr1	153925976	153925976	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagggccccagaaactacaGataagagatctggcctaaag	11	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153925976	C	C	153925976	1	2	4	0	1	0	0	0	0	0	0	0	3932	957	33	4		4	CRTC2	1	153925976	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	125651	153925976	95324645	175	2199											
NUP210L	91181	broad.mit.edu	37	chr1	154099789	154099789	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaaaagactgactcacatCtgaaatatagacctttgtgc	6	8	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154099789	T	T	154099789	3	4	4	1	0	0	0	0	1	0	0	0	10856	913	32	4	4611	4	NUP210L	1	154099789	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	173813	154099789	95150832	176	2200											
TDRD10	126668	broad.mit.edu	37	chr1	154520070	154520070	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacctggcattcttttagatCaaacgaactggttatctgag	8	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154520070	T	T	154520070	1	4	4	0	1	0	0	0	0	0	0	0	15853	841	29	4		4	TDRD10	1	154520070	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	420281	154520070	94730551	177	2201											
ADAR	103	broad.mit.edu	37	chr1	154561804	154561804	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggcagggaactggagctctCcacagccgggcagccgggcc	17	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154561804	A	A	154561804	1	1	4	0	1	0	0	0	0	0	0	0	281	870	30	3		3	ADAR	1	154561804	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	41734	154561804	94688817	178	2202											
KCNN3	3782	broad.mit.edu	37	chr1	154794758	154794758	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaaggggtggggacacagGagggactgttaccagcccct	17	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154794758	C	C	154794758	1	2	4	0	1	0	0	0	0	0	0	0	8150	1189	41	4		4	KCNN3	1	154794758	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	232954	154794758	94455863	179	2203											
PBXIP1	57326	broad.mit.edu	37	chr1	154919271	154919271	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaggctctgaagctcttcCttttgggcctagaatatggt	10	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154919271	G	G	154919271	3	3	4	1	0	0	0	0	1	0	0	0	11590	680	24	4	1324	4	PBXIP1	1	154919271	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	124513	154919271	94331350	180	2204											
KRTCAP2	200185	broad.mit.edu	37	chr1	155145212	155145212	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccaactgcagggaggatAcagtgagcgagaacacgaag	13	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155145212	G	G	155145212	5	3	4	1	0	0	0	0	0	0	1	0	8650	405	14	5	265	5	KRTCAP2	1	155145212	Splice_Site	SNP	A	TCGA-05-4382-01A-01D-1265-08	225941	155145212	94105409	181	2205											
SCAMP3	10067	broad.mit.edu	37	chr1	155228631	155228631	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcacacatccagaggtagTacatggtggatacagtcttc	9	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155228631	G	G	155228631	3	3	4	1	0	0	0	0	1	0	0	0	13984	1638	57	5	560	5	SCAMP3	1	155228631	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	83419	155228631	94021990	182	2206											
MEF2D	4209	broad.mit.edu	37	chr1	156444857	156444857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctggtcacttgcctgccCcaagcccaagtgcacacatg	9	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156444857	A	A	156444857	1	1	4	0	1	0	0	0	0	0	0	0	9551	638	22	2		2	MEF2D	1	156444857	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1216226	156444857	92805764	183	2207											
BCAN	63827	broad.mit.edu	37	chr1	156622600	156622600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattctggaagaactgccCcagcagggacctcagtgcag	11	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156622600	A	A	156622600	3	1	4	1	0	0	0	0	1	0	0	0	1350	623	22	2	1884	2	BCAN	1	156622600	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	177743	156622600	92628021	184	2208											
HDGF	3068	broad.mit.edu	37	chr1	156714928	156714928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaagaggtctttggggcCcaggaatgccctggtgagag	18	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156714928	A	A	156714928	3	1	4	1	0	0	0	0	1	0	0	0	7085	623	22	2	563	2	HDGF	1	156714928	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	92328	156714928	92535693	185	2209											
INSRR	3645	broad.mit.edu	37	chr1	156818752	156818752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagctgagcaggtcgcggGcctccagtggctcatagcgc	15	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156818752	T	T	156818752	3	4	4	1	0	0	0	0	1	0	0	0	7844	1203	42	3	2424	3	INSRR	1	156818752	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	103824	156818752	92431869	186	2210											
ETV3L	440695	broad.mit.edu	37	chr1	157062580	157062580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctttgcctccatcatgGgagcaggctttacttccagc	8	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157062580	T	T	157062580	3	4	4	1	0	0	0	0	1	0	0	0	5322	1232	43	2	142	2	ETV3L	1	157062580	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	243828	157062580	92188041	187	2211											
FCRL5	83416	broad.mit.edu	37	chr1	157508921	157508921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcgctgggggccaaagcCattgtcagctgtgcagtagt	14	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157508921	A	A	157508921	3	1	4	1	0	0	0	0	1	0	0	0	5855	594	21	2	1620	2	FCRL5	1	157508921	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	446341	157508921	91741700	188	2212											
FCRL4	83417	broad.mit.edu	37	chr1	157555977	157555977	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctctcacagtgacattcagCaccatgctctggacagggcc	9	15	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157555977	G	G	157555977	2	3	4	1	0	0	0	0	0	0	0	1	5854	697	25	4		4	FCRL4	1	157555977	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	47056	157555977	91694644	189	2213											
FCRL3	115352	broad.mit.edu	37	chr1	157665424	157665424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacaaaagggctgtcagaGgattctgacgttgtgacaga	14	6	2	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157665424	T	T	157665424	1	4	4	0	1	0	0	0	0	0	0	0	5853	1015	35	2		2	FCRL3	1	157665424	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	109447	157665424	91585197	190	2214											
FCRL2	79368	broad.mit.edu	37	chr1	157737468	157737468	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttctcaacaatatatttaGacgtttgaggggaatatcag	8	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157737468	C	C	157737468	1	2	4	0	1	0	0	0	0	0	0	0	5852	957	33	4		4	FCRL2	1	157737468	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	72044	157737468	91513153	191	2215											
FCRL1	115350	broad.mit.edu	37	chr1	157771232	157771232	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcacagtaacaaaatgccActctctttaaatactaacct	3	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157771232	T	T	157771232	1	4	4	0	1	0	0	0	0	0	0	0	5851	174	6	5		5	FCRL1	1	157771232	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	33764	157771232	91479389	192	2216											
FCRL1	115350	broad.mit.edu	37	chr1	157771492	157771492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatttatttatttgtctaGggacttgtggcttatcatct	10	5	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157771492	T	T	157771492	1	4	4	0	1	0	0	0	0	0	0	0	5851	1015	35	2		2	FCRL1	1	157771492	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	260	157771492	91479129	193	2217											
CD5L	922	broad.mit.edu	37	chr1	157803248	157803248	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacgcccttgtgcagcaccTccagtcgcccagagcagagg	11	15	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157803248	A	A	157803248	3	1	4	1	0	0	0	0	1	0	0	0	3057	1551	54	5	278	5	CD5L	1	157803248	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	31756	157803248	91447373	194	2218											
CD1C	911	broad.mit.edu	37	chr1	158262614	158262614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcctgctggcctgtcttGtcgagtgagacacagcagtc	14	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158262614	T	T	158262614	3	4	4	1	0	0	0	0	1	0	0	0	3006	1377	48	3	853	3	CD1C	1	158262614	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	459366	158262614	90988007	195	2219											
CD1B	910	broad.mit.edu	37	chr1	158300906	158300906	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagagagaagcaggagacaAttaggaagaatgggaatgaa	14	2	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158300906	C	C	158300906	1	2	4	0	1	0	0	0	0	0	0	0	3005	116	4	5		5	CD1B	1	158300906	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	38292	158300906	90949715	196	2220											
CD1E	913	broad.mit.edu	37	chr1	158324493	158324493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctctaagctgataatttGcctgggaacaccaactattt	7	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158324493	T	T	158324493	1	4	4	0	1	0	0	0	0	0	0	0	3008	1334	46	3		3	CD1E	1	158324493	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	23587	158324493	90926128	197	2221											
OR6Y1	391112	broad.mit.edu	37	chr1	158517593	158517593	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaagttgagtcatgcaGccattgaaggaaatactctt	9	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517593	T	T	158517593	2	4	4	1	0	0	0	0	0	0	0	1	11307	958	34	3		3	OR6Y1	1	158517593	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	193100	158517593	90733028	198	2222											
OR10Z1	128368	broad.mit.edu	37	chr1	158576967	158576967	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgcctcgcaccttacaGtggtcattattcattatggc	8	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158576967	C	C	158576967	3	2	4	1	0	0	0	0	1	0	0	0	11017	1029	36	4	741	4	OR10Z1	1	158576967	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	59374	158576967	90673654	199	2223											
SPTA1	6708	broad.mit.edu	37	chr1	158618162	158618162	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgccttagggacagtgtAcaagaataaatatggcacag	10	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158618162	G	G	158618162	1	3	4	0	1	0	0	0	0	0	0	0	15234	406	14	5		5	SPTA1	1	158618162	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	41195	158618162	90632459	200	2224											
SPTA1	6708	broad.mit.edu	37	chr1	158644206	158644207	+	Nonsense_Mutation	DNP	AG	TT	TT													gattgaaatcggtcatcgtaAgagtcaatctcatgctgtgg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	158644207	TT	TT	158644206	4	4	4	1	0	0	0	0	0	1	0	0	15234	59	3	5	6168	5	SPTA1	1	158644206	Nonsense_Mutation	DNP	AG	TCGA-05-4382-01A-01D-1265-08	26044	158644206	90606415	201	2225											
OR6K2	81448	broad.mit.edu	37	chr1	158669885	158669885	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcgtgtgtctgtgcaggcCagacgcagcactgggaggaa	16	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158669885	G	G	158669885	2	3	4	1	0	0	0	0	0	0	0	1	11296	581	21	4		4	OR6K2	1	158669885	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	25679	158669885	90580736	202	2226											
OR10J3	441911	broad.mit.edu	37	chr1	159283598	159283598	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacacaacagggttcagtAggggagtgatgagtgtaggt	16	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159283598	G	G	159283598	2	3	4	1	0	0	0	0	0	0	0	1	11005	407	15	5		5	OR10J3	1	159283598	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	613713	159283598	89967023	203	2227											
VANGL2	57216	broad.mit.edu	37	chr1	160389247	160389247	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagctaccagggcgtggtGcagttcgccgtgtcgctggt	16	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160389247	T	T	160389247	2	4	4	1	0	0	0	0	0	0	0	1	17247	1306	46	3		3	VANGL2	1	160389247	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1105649	160389247	88861374	204	2228											
SLAMF1	6504	broad.mit.edu	37	chr1	160580639	160580639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggactggatactcacttcaCagaatgcaaatgaaaacagc	9	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160580639	A	A	160580639	1	1	4	0	1	0	0	0	0	0	0	0	14480	493	17	3		3	SLAMF1	1	160580639	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	191392	160580639	88669982	205	2229											
SLAMF1	6504	broad.mit.edu	37	chr1	160594108	160594108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagacgtttgttttcatGgttttagaggtcagctttag	13	4	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160594108	T	T	160594108	1	4	4	0	1	0	0	0	0	0	0	0	14480	1363	47	2		2	SLAMF1	1	160594108	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	13469	160594108	88656513	206	2230											
SLAMF7	57823	broad.mit.edu	37	chr1	160719714	160719714	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacatggggaagaggatgtGatttatacctggaaggccct	14	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160719714	T	T	160719714	2	4	4	1	0	0	0	0	0	0	0	1	14482	1277	45	3		3	SLAMF7	1	160719714	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	125606	160719714	88530907	207	2231											
ITLN1	55600	broad.mit.edu	37	chr1	160849175	160849175	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctcgttattaaatacccTgaactgaacaaatcccgcag	5	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160849175	A	A	160849175	3	1	4	1	0	0	0	0	1	0	0	0	7980	1579	55	5	234	5	ITLN1	1	160849175	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	129461	160849175	88401446	208	2232											
ITLN1	55600	broad.mit.edu	37	chr1	160853328	160853328	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcctcatctagggaatacAcagggtttattctcattccc	7	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160853328	T	T	160853328	1	4	4	0	1	0	0	0	0	0	0	0	7980	174	6	5		5	ITLN1	1	160853328	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	4153	160853328	88397293	209	2233											
F11R	50848	broad.mit.edu	37	chr1	160968656	160968656	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgataggcggtgagccgacCaggctcacaccaggaatgac	13	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160968656	T	T	160968656	1	4	4	0	1	0	0	0	0	0	0	0	5381	609	21	4		4	F11R	1	160968656	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	115328	160968656	88281965	210	2234											
USP21	27005	broad.mit.edu	37	chr1	161133471	161133471	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggggggtacaggcttggggGgaaaaatcgatactatcaag	16	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161133471	C	C	161133471	1	2	4	0	1	0	0	0	0	0	0	0	17179	1247	43	4		4	USP21	1	161133471	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	164815	161133471	88117150	211	2235											
ADAMTS4	9507	broad.mit.edu	37	chr1	161167710	161167710	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaagtgtaagtgggtggaGagagggtgaataggggtcag	20	2	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161167710	T	T	161167710	1	4	4	0	1	0	0	0	0	0	0	0	268	957	33	3		3	ADAMTS4	1	161167710	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	34239	161167710	88082911	212	2236											
OLFML2B	25903	broad.mit.edu	37	chr1	161987227	161987227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgccccaccagtttggtgGtgactgaatgtagcttcagg	12	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161987227	T	T	161987227	3	4	4	1	0	0	0	0	1	0	0	0	10953	1261	44	3	1767	3	OLFML2B	1	161987227	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	819517	161987227	87263394	213	2237											
DDR2	4921	broad.mit.edu	37	chr1	162724443	162724443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagaaggggatggagcctGgtgccctgagattccagtgg	17	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162724443	T	T	162724443	3	4	4	1	0	0	0	0	1	0	0	0	4370	1357	47	2	225	2	DDR2	1	162724443	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	737216	162724443	86526178	214	2238											
DDR2	4921	broad.mit.edu	37	chr1	162745352	162745352	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacaagatttggcataatGtccaggaataggccttggtg	12	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162745352	A	A	162745352	1	1	4	0	1	0	0	0	0	0	0	0	4370	1392	48	4		4	DDR2	1	162745352	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	20909	162745352	86505269	215	2239											
HSD17B7	51478	broad.mit.edu	37	chr1	162766534	162766534	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgcctagttttgatgGcatgttaagttggggggatg	14	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162766534	A	A	162766534	1	1	4	0	1	0	0	0	0	0	0	0	7455	1218	42	4		4	HSD17B7	1	162766534	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	21182	162766534	86484087	216	2240											
RGS5	8490	broad.mit.edu	37	chr1	163122409	163122409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcagccatcttggcaggGgacttgatcttcttgtaatc	9	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163122409	T	T	163122409	2	4	4	1	0	0	0	0	0	0	0	1	13417	1219	43	2		2	RGS5	1	163122409	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	355875	163122409	86128212	217	2241											
LMX1A	4009	broad.mit.edu	37	chr1	165322268	165322268	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaagtcctcgacgcacaCtgatgccagtgcgcggggag	14	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165322268	A	A	165322268	1	1	4	0	1	0	0	0	0	0	0	0	8935	580	20	3		3	LMX1A	1	165322268	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2199859	165322268	83928353	218	2242											
RXRG	6258	broad.mit.edu	37	chr1	165380317	165380317	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcctcactctcagctcgctCtcggctcctctgtctttctt	6	17	6	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165380317	G	G	165380317	3	3	4	1	0	0	0	0	1	0	0	0	13876	922	32	4	763	4	RXRG	1	165380317	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	58049	165380317	83870304	219	2243											
RXRG	6258	broad.mit.edu	37	chr1	165414138	165414138	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatttccatacatgtttactCgtcagttcatgttcctctcc	4	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165414138	A	A	165414138	1	1	4	0	1	0	0	0	0	0	0	0	13876	899	31	3		3	RXRG	1	165414138	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	33821	165414138	83836483	220	2244											
MGST3	4259	broad.mit.edu	37	chr1	165620223	165620223	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaatgctcctcttgaccatCtgatcagtatgtgctttgtt	8	9	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165620223	A	A	165620223	1	1	4	0	1	0	0	0	0	0	0	0	9655	928	32	3		3	MGST3	1	165620223	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	206085	165620223	83630398	221	2245											
UCK2	7371	broad.mit.edu	37	chr1	165877060	165877060	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagcagcaggccgcattgAcccgtctccatcggacccca	9	18	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165877060	T	T	165877060	4	4	4	1	0	0	0	0	0	0	0	0	17050	288	10	5	812	5	UCK2	1	165877060	Nonstop_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	256837	165877060	83373561	222	2246											
ILDR2	387597	broad.mit.edu	37	chr1	166904518	166904518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagacaagcatgggcagggCagtctggaactacatttacc	12	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166904518	A	A	166904518	1	1	4	0	1	0	0	0	0	0	0	0	7780	725	25	3		3	ILDR2	1	166904518	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1027458	166904518	82346103	223	2247											
DUSP27	92235	broad.mit.edu	37	chr1	167086536	167086536	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatgatgttcctaactctCtgatgagaatgctgcctgtc	9	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167086536	A	A	167086536	1	1	4	0	1	0	0	0	0	0	0	0	4864	928	32	3		3	DUSP27	1	167086536	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	182018	167086536	82164085	224	2248											
DCAF6	55827	broad.mit.edu	37	chr1	167974027	167974027	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacaccacacacatcatcaGtctggtgaggataagtatgc	10	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167974027	C	C	167974027	3	2	4	1	0	0	0	0	1	0	0	0	4307	1020	36	4	1412	4	DCAF6	1	167974027	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	887491	167974027	81276594	225	2249											
DCAF6	55827	broad.mit.edu	37	chr1	168025550	168025550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgcgtagcgtacggacGgcgcccacccccagctgcca	12	18	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168025550	T	T	168025550	1	4	4	0	1	0	0	0	0	0	0	0	4307	1131	39	1		1	DCAF6	1	168025550	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	51523	168025550	81225071	226	2250											
F5	2153	broad.mit.edu	37	chr1	169526046	169526046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatggagaataattctgGccccgagctcattcccagca	9	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169526046	T	T	169526046	3	4	4	1	0	0	0	0	1	0	0	0	5391	1203	42	3	5964	3	F5	1	169526046	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1500496	169526046	79724575	227	2251											
C1orf129	80133	broad.mit.edu	37	chr1	170955688	170955688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgaggtcatgattatcCtttgtggttgcagagagtag	14	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170955688	A	A	170955688	1	1	4	0	1	0	0	0	0	0	0	0	2016	696	24	2		2	C1orf129	1	170955688	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1429642	170955688	78294933	228	2252											
FMO2	2327	broad.mit.edu	37	chr1	171168447	171168447	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattagcttgacatagttgcTctggagctcacagacttctc	8	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171168447	A	A	171168447	1	1	4	0	1	0	0	0	0	0	0	0	6013	1566	54	5		5	FMO2	1	171168447	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	212759	171168447	78082174	229	2253											
FMO2	2327	broad.mit.edu	37	chr1	171177857	171177857	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcattccttcattcctttAgcagttttgaatgcctaata	4	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171177857	C	C	171177857	1	2	4	0	1	0	0	0	0	0	0	0	6013	435	15	5		5	FMO2	1	171177857	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	9410	171177857	78072764	230	2254											
FMO1	2326	broad.mit.edu	37	chr1	171221523	171221523	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtcacctctggggtgcCtattggcatcctctccccct	8	17	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171221523	G	G	171221523	1	3	4	0	1	0	0	0	0	0	0	0	6012	696	24	4		4	FMO1	1	171221523	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	43666	171221523	78029098	231	2255											
FMO4	2329	broad.mit.edu	37	chr1	171310836	171310836	+	Frame_Shift_Del	DEL	C	-	-													ctccaagcctgcctccatgtCacattatttaaaagcctggg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171310836	-	-	171310836	7	5	4	1	0	1	0	1	0	0	0	0	6015	838	29	0	1565	0	FMO4	1	171310836	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	89313	171310836	77939785	232	2256											
MYOC	4653	broad.mit.edu	37	chr1	171621555	171621555	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatggatgactgacatggccTggctctgctctgggcagctg	14	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171621555	A	A	171621555	3	1	4	1	0	0	0	0	1	0	0	0	10180	1580	55	5	1329	5	MYOC	1	171621555	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	310719	171621555	77629066	233	2257											
KLHL20	27252	broad.mit.edu	37	chr1	173685210	173685210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagccaatgcgcaggtagGcatttaggaagaaaaccttt	11	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173685210	T	T	173685210	1	4	4	0	1	0	0	0	0	0	0	0	8446	1218	42	3		3	KLHL20	1	173685210	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2063655	173685210	75565411	234	2258											
KLHL20	27252	broad.mit.edu	37	chr1	173702931	173702931	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaccccaacaaactgccaGaaggggttccccaacctgcc	9	16	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173702931	A	A	173702931	3	1	4	1	0	0	0	0	1	0	0	0	8446	943	33	4	109	4	KLHL20	1	173702931	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	17721	173702931	75547690	235	2259											
SERPINC1	462	broad.mit.edu	37	chr1	173883690	173883690	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaagacctttggtcgtaCctccatcagttgctggaggg	13	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173883690	A	A	173883690	5	1	4	1	0	0	0	0	0	0	1	0	14222	521	18	3	1009	3	SERPINC1	1	173883690	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	180759	173883690	75366931	236	2260											
RABGAP1L	9910	broad.mit.edu	37	chr1	174363350	174363350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaatcctagttttcataGctcccataagtcataaatgc	4	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174363350	T	T	174363350	1	4	4	0	1	0	0	0	0	0	0	0	13073	986	34	3		3	RABGAP1L	1	174363350	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	479660	174363350	74887271	237	2261											
TNN	63923	broad.mit.edu	37	chr1	175097675	175097675	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttaaaataggaagaaactCcacctctttcctccttgccc	4	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175097675	A	A	175097675	1	1	4	0	1	0	0	0	0	0	0	0	16446	870	30	3		3	TNN	1	175097675	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	734325	175097675	74152946	238	2262											
TNR	7143	broad.mit.edu	37	chr1	175332037	175332037	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaataaagcacagatgggTgtgggactccgcactcagtg	13	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175332037	A	A	175332037	1	1	4	0	1	0	0	0	0	0	0	0	16461	1711	59	5		5	TNR	1	175332037	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	234362	175332037	73918584	239	2263											
TNR	7143	broad.mit.edu	37	chr1	175333981	175333981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttatctaatgcatcttctGcagcactggaggaagtagct	9	9	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175333981	T	T	175333981	1	4	4	0	1	0	0	0	0	0	0	0	16461	1334	46	3		3	TNR	1	175333981	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1944	175333981	73916640	240	2264											
RFWD2	64326	broad.mit.edu	37	chr1	176118075	176118075	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttttagcctgaaatgcTtttacaaaatgggaacagtt	7	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176118075	C	C	176118075	1	2	4	0	1	0	0	0	0	0	0	0	13368	1624	56	5		5	RFWD2	1	176118075	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	784094	176118075	73132546	241	2265											
PAPPA2	60676	broad.mit.edu	37	chr1	176526098	176526099	+	Missense_Mutation	DNP	GG	TC	TC													aagatgggcagggagactccGgtatctcttcacatttccaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	176526099	TC	TC	176526098	3	4	4	1	0	0	0	0	1	0	0	0	11527	1116	39	1	642	1	PAPPA2	1	176526098	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	408023	176526098	72724523	242	2266											
ASTN1	460	broad.mit.edu	37	chr1	176992707	176992707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaagatgaagcggctcCctgcagggtgagagaaagga	15	9	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176992707	A	A	176992707	3	1	4	1	0	0	0	0	1	0	0	0	1068	637	22	2	2685	2	ASTN1	1	176992707	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	466609	176992707	72257914	243	2267											
ASTN1	460	broad.mit.edu	37	chr1	177001826	177001826	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctctcccgtccgtgccCgccgatcagcacagaaggaa	11	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001826	T	T	177001826	3	4	4	1	0	0	0	0	1	0	0	0	1068	652	23	4	3341	4	ASTN1	1	177001826	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	9119	177001826	72248795	244	2268											
FAM5B	57795	broad.mit.edu	37	chr1	177247804	177247804	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccttcagcaccgctaccAgcagctgggagctggcttga	12	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177247804	T	T	177247804	3	4	4	1	0	0	0	0	1	0	0	0	5644	188	7	5	1140	5	FAM5B	1	177247804	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	245978	177247804	72002817	245	2269											
RASAL2	9462	broad.mit.edu	37	chr1	178414538	178414538	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttttcctttcagatgaatCtgatagctttagttttaaag	6	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178414538	T	T	178414538	1	4	4	0	1	0	0	0	0	0	0	0	13172	928	32	4		4	RASAL2	1	178414538	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1166734	178414538	70836083	246	2270											
RALGPS2	55103	broad.mit.edu	37	chr1	178846684	178846684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcatacccatcaactgGcagcattctagaaaatgagc	7	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178846684	T	T	178846684	3	4	4	1	0	0	0	0	1	0	0	0	13126	1203	42	3	689	3	RALGPS2	1	178846684	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	432146	178846684	70403937	247	2271											
ABL2	27	broad.mit.edu	37	chr1	179078178	179078178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgccagaccacccaccccCagcagtgccactgcccccac	7	22	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179078178	A	A	179078178	3	1	4	1	0	0	0	0	1	0	0	0	93	594	21	2	1328	2	ABL2	1	179078178	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	231494	179078178	70172443	248	2272											
C1orf125	126859	broad.mit.edu	37	chr1	179338107	179338107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaattaaaaccccaaaGgtttgtatgtacatatgtag	7	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179338107	T	T	179338107	3	4	4	1	0	0	0	0	1	0	0	0	2013	1014	35	2	276	2	C1orf125	1	179338107	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	259929	179338107	69912514	249	2273											
NPHS2	7827	broad.mit.edu	37	chr1	179533830	179533830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatggaatctcacctttaCgcagaaccagatggaaaaag	8	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179533830	A	A	179533830	3	1	4	1	0	0	0	0	1	0	0	0	10678	536	19	3	806	3	NPHS2	1	179533830	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	195723	179533830	69716791	250	2274											
TDRD5	163589	broad.mit.edu	37	chr1	179558219	179558219	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctggagtatggctgccCaacgagcactgagtgctcat	12	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179558219	A	A	179558219	1	1	4	0	1	0	0	0	0	0	0	0	15855	609	21	2		2	TDRD5	1	179558219	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	24389	179558219	69692402	251	2275											
TDRD5	163589	broad.mit.edu	37	chr1	179619970	179619970	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taattcatgtttagatctatCacctgaatccaatatcttga	4	8	4	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179619970	T	T	179619970	1	4	4	0	1	0	0	0	0	0	0	0	15855	841	29	4		4	TDRD5	1	179619970	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	61751	179619970	69630651	252	2276											
TDRD5	163589	broad.mit.edu	37	chr1	179631268	179631268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactggaatgccatgcctGgagtcagtgaccataggtga	12	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179631268	T	T	179631268	2	4	4	1	0	0	0	0	0	0	0	1	15855	1335	47	2		2	TDRD5	1	179631268	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	11298	179631268	69619353	253	2277											
TDRD5	163589	broad.mit.edu	37	chr1	179659901	179659901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctattacattgtacaaagaCaagcgtcaagaatctgtaga	8	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179659901	A	A	179659901	3	1	4	1	0	0	0	0	1	0	0	0	15855	477	17	3	2831	3	TDRD5	1	179659901	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	28633	179659901	69590720	254	2278											
TDRD5	163589	broad.mit.edu	37	chr1	179660007	179660007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccactgctgccttaggtGctgccgcacggttagctaca	11	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179660007	T	T	179660007	3	4	4	1	0	0	0	0	1	0	0	0	15855	1319	46	3	2937	3	TDRD5	1	179660007	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	106	179660007	69590614	255	2279											
CACNA1E	777	broad.mit.edu	37	chr1	181705562	181705562	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgttcatcttcagcacCaccaacccgtaagccaccct	4	17	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181705562	T	T	181705562	2	4	4	1	0	0	0	0	0	0	0	1	2568	581	21	4		4	CACNA1E	1	181705562	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2045555	181705562	67545059	256	2280											
CACNA1E	777	broad.mit.edu	37	chr1	181726302	181726302	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtggggagcagcagaggctCcagaaaggattcttgggcca	16	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181726302	A	A	181726302	1	1	4	0	1	0	0	0	0	0	0	0	2568	870	30	3		3	CACNA1E	1	181726302	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	20740	181726302	67524319	257	2281											
RGS8	85397	broad.mit.edu	37	chr1	182635924	182635924	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaggatttttccagtggctCatctggtcagcatctcacta	8	11	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182635924	A	A	182635924	1	1	4	0	1	0	0	0	0	0	0	0	13421	841	29	3		3	RGS8	1	182635924	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	909622	182635924	66614697	258	2282											
LAMC1	3915	broad.mit.edu	37	chr1	183100547	183100547	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtttaatggttaagttGtggcttctgttatggggtgt	13	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183100547	A	A	183100547	1	1	4	0	1	0	0	0	0	0	0	0	8686	1392	48	4		4	LAMC1	1	183100547	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	464623	183100547	66150074	259	2283											
LAMC2	3918	broad.mit.edu	37	chr1	183197879	183197879	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgattctctgaccaaactgGcctgtgagcaccctgggcct	10	13	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183197879	C	C	183197879	1	2	4	0	1	0	0	0	0	0	0	0	8687	1218	42	4		4	LAMC2	1	183197879	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	97332	183197879	66052742	260	2284											
GLT25D2	23127	broad.mit.edu	37	chr1	183909681	183909681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattcatgaagaggctgtgCccaagggaaggcaggcagtt	14	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183909681	A	A	183909681	1	1	4	0	1	0	0	0	0	0	0	0	6531	754	26	3		3	GLT25D2	1	183909681	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	711802	183909681	65340940	261	2285											
GLT25D2	23127	broad.mit.edu	37	chr1	183920378	183920378	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaactgtcgtgaaaattCatttctatctcacatcagtg	7	8	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183920378	G	G	183920378	1	3	4	0	1	0	0	0	0	0	0	0	6531	841	29	4		4	GLT25D2	1	183920378	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	10697	183920378	65330243	262	2286											
GLT25D2	23127	broad.mit.edu	37	chr1	183942644	183942644	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgggaacacaatgacacGcatgtttcaagggagtaaac	10	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183942644	A	A	183942644	1	1	4	0	1	0	0	0	0	0	0	0	6531	1102	38	4		4	GLT25D2	1	183942644	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	22266	183942644	65307977	263	2287											
RNF2	6045	broad.mit.edu	37	chr1	185069342	185069342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttttaggtattaaatgGctctttttctttggaattgg	9	3	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185069342	T	T	185069342	3	4	4	1	0	0	0	0	1	0	0	0	13583	1203	42	3	942	3	RNF2	1	185069342	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1126698	185069342	64181279	264	2288											
HMCN1	83872	broad.mit.edu	37	chr1	185704050	185704050	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacgttggcttttgtgtttGatgtgactggttctatgtat	11	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185704050	T	T	185704050	3	4	4	1	0	0	0	0	1	0	0	0	7287	1290	45	3	141	3	HMCN1	1	185704050	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	634708	185704050	63546571	265	2289											
HMCN1	83872	broad.mit.edu	37	chr1	186062560	186062560	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattgtagtagaaattatttGaactagtattacataataca	5	3	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186062560	T	T	186062560	1	4	4	0	1	0	0	0	0	0	0	0	7287	1305	45	3		3	HMCN1	1	186062560	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	358510	186062560	63188061	266	2290											
HMCN1	83872	broad.mit.edu	37	chr1	186120274	186120274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactggccctcttttctccCatgtaatgttgatgaaattg	7	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186120274	A	A	186120274	1	1	4	0	1	0	0	0	0	0	0	0	7287	609	21	2		2	HMCN1	1	186120274	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	57714	186120274	63130347	267	2291											
PRG4	10216	broad.mit.edu	37	chr1	186266034	186266034	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaacacttcccatttaCctgttgttgctgctgtctgt	8	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186266034	G	G	186266034	4	3	4	1	0	0	0	0	0	1	0	0	12587	518	18	4	29	4	PRG4	1	186266034	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	145760	186266034	62984587	268	2292											
TPR	7175	broad.mit.edu	37	chr1	186295043	186295043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaatatgttaaaaaaacCggacagaataattaaccaaa	4	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186295043	A	A	186295043	1	1	4	0	1	0	0	0	0	0	0	0	16540	667	23	1		1	TPR	1	186295043	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	29009	186295043	62955578	269	2293											
KCNT2	343450	broad.mit.edu	37	chr1	196398799	196398799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgacatccccgaagcccaCagtagaaaacgtcacaatgc	8	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196398799	A	A	196398799	3	1	4	1	0	0	0	0	1	0	0	0	8162	478	17	3	2760	3	KCNT2	1	196398799	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	10103756	196398799	52851822	270	2294											
CFH	3075	broad.mit.edu	37	chr1	196654312	196654312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttttatcctgcaacccgGggaaatacagcaaaatgcac	9	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196654312	T	T	196654312	2	4	4	1	0	0	0	0	0	0	0	1	3313	1219	43	2		2	CFH	1	196654312	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	255513	196654312	52596309	271	2295											
CFHR5	81494	broad.mit.edu	37	chr1	196977662	196977662	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaacaaaaataacatacAgttaaaatggagaaacgatg	7	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196977662	G	G	196977662	3	3	4	1	0	0	0	0	1	0	0	0	3318	188	7	5	1597	5	CFHR5	1	196977662	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	323350	196977662	52272959	272	2296											
ASPM	259266	broad.mit.edu	37	chr1	197072368	197072368	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttccaatactgtaagcccTataatacttttgaatcagaa	4	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197072368	G	G	197072368	2	3	4	1	0	0	0	0	0	0	0	1	1060	1521	53	5		5	ASPM	1	197072368	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	94706	197072368	52178253	273	2297											
ASPM	259266	broad.mit.edu	37	chr1	197094181	197094181	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctactcagtttttaccatgcTcatcacttaattcaattcct	2	12	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197094181	A	A	197094181	3	1	4	1	0	0	0	0	1	0	0	0	1060	1551	54	5	7428	5	ASPM	1	197094181	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	21813	197094181	52156440	274	2298											
CRB1	23418	broad.mit.edu	37	chr1	197396583	197396583	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctctattttgacattgaaGagtatgtggcaggcagattt	10	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197396583	A	A	197396583	5	1	4	1	0	0	0	0	0	0	1	0	3880	956	33	4	2154	4	CRB1	1	197396583	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	302402	197396583	51854038	275	2299											
DENND1B	163486	broad.mit.edu	37	chr1	197479885	197479885	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagtcctgaagtagggtcaCtcacattgtcagcaccgagg	11	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197479885	G	G	197479885	3	3	4	1	0	0	0	0	1	0	0	0	4467	565	20	4	298	4	DENND1B	1	197479885	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	83302	197479885	51770736	276	2300											
ATP6V1G3	127124	broad.mit.edu	37	chr1	198509680	198509680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttatttcgtgacagaccCctcacaggtgagacttactc	8	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198509680	A	A	198509680	1	1	4	0	1	0	0	0	0	0	0	0	1192	638	22	2		2	ATP6V1G3	1	198509680	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1029795	198509680	50740941	277	2301											
PKP1	5317	broad.mit.edu	37	chr1	201289368	201289368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttccccctttctctgcCctcttccaccctcttctctc	1	22	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201289368	A	A	201289368	1	1	4	0	1	0	0	0	0	0	0	0	12079	638	22	2		2	PKP1	1	201289368	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2779688	201289368	47961253	278	2302											
PKP1	5317	broad.mit.edu	37	chr1	201297978	201297978	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctaagaagagactgtccAagcaagttaggcttgcaggt	11	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201297978	T	T	201297978	1	4	4	0	1	0	0	0	0	0	0	0	12079	145	5	5		5	PKP1	1	201297978	3'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	8610	201297978	47952643	279	2303											
PPP1R12B	4660	broad.mit.edu	37	chr1	202394513	202394513	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacctgatgatttaatcctGgtaagaccattaatatgtgt	7	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202394513	A	A	202394513	1	1	4	0	1	0	0	0	0	0	0	0	12456	1363	47	4		4	PPP1R12B	1	202394513	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1096535	202394513	46856108	280	2304											
KDM5B	10765	broad.mit.edu	37	chr1	202715449	202715449	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctttccgaatcaatcacTccctagaataaagtatactt	3	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202715449	A	A	202715449	2	1	4	1	0	0	0	0	0	0	0	1	8204	1538	54	5		5	KDM5B	1	202715449	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	320936	202715449	46535172	281	2305											
KLHL12	59349	broad.mit.edu	37	chr1	202878154	202878154	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacctaggcgagcccttgtCctgggtccctgcatctgact	10	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202878154	T	T	202878154	2	4	4	1	0	0	0	0	0	0	0	1	8439	854	30	4		4	KLHL12	1	202878154	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	162705	202878154	46372467	282	2306											
LAX1	54900	broad.mit.edu	37	chr1	203743105	203743105	+	Frame_Shift_Del	DEL	G	-	-													ccatggtcccccagatgtgtGggaacctcactccctcggca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	203743105	-	-	203743105	7	5	4	1	0	1	0	1	0	0	0	0	8720	1348	47	0	556	0	LAX1	1	203743105	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	864951	203743105	45507516	283	2307											
REN	5972	broad.mit.edu	37	chr1	204136808	204136808	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatacgagcttggactcagCtactcatagccttgaacagt	9	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204136808	G	G	204136808	1	3	4	0	1	0	0	0	0	0	0	0	13332	812	28	4		4	REN	1	204136808	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	393703	204136808	45113813	284	2308											
LRRN2	10446	broad.mit.edu	37	chr1	204587229	204587229	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagagccaggatggcaatgAgcccaggacggtcccctaag	14	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204587229	T	T	204587229	3	4	4	1	0	0	0	0	1	0	0	0	9122	304	11	5	253	5	LRRN2	1	204587229	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	450421	204587229	44663392	285	2309											
LRRN2	10446	broad.mit.edu	37	chr1	204588730	204588730	+	Frame_Shift_Del	DEL	G	-	-													aaagctgtggtcctccagccGggtcagctggttctcctcta					rs148739326		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	204588730	-	-	204588730	7	5	4	1	0	1	0	1	0	0	0	0	9122	1115	39	0	1754	0	LRRN2	1	204588730	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	1501	204588730	44661891	286	2310											
NFASC	23114	broad.mit.edu	37	chr1	204951081	204951081	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgccctatgagatccgagtCcaggctgaaaatgacttcgg	12	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204951081	T	T	204951081	2	4	4	1	0	0	0	0	0	0	0	1	10454	842	30	4		4	NFASC	1	204951081	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	362351	204951081	44299540	287	2311											
CNTN2	6900	broad.mit.edu	37	chr1	205031440	205031440	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcagccctgaggtaggacTggacatataagccatatcct	11	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205031440	A	A	205031440	1	1	4	0	1	0	0	0	0	0	0	0	3673	1595	55	5		5	CNTN2	1	205031440	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	80359	205031440	44219181	288	2312											
DYRK3	8444	broad.mit.edu	37	chr1	206821658	206821658	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctacacatatatccagtCtcggttctacagagctccag	7	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206821658	G	G	206821658	3	3	4	1	0	0	0	0	1	0	0	0	4897	913	32	4	1146	4	DYRK3	1	206821658	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1790218	206821658	42428963	289	2313											
PIGR	5284	broad.mit.edu	37	chr1	207111097	207111097	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttaggagcccaggacCtgcaggatgaggggtgcaag	16	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207111097	A	A	207111097	5	1	4	1	0	0	0	0	0	0	1	0	11992	695	24	2	1938	2	PIGR	1	207111097	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	289439	207111097	42139524	290	2314											
CR1	1378	broad.mit.edu	37	chr1	207782848	207782848	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctccccctcggtgtatttCtactaataaatgcacagctc	5	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207782848	T	T	207782848	3	4	4	1	0	0	0	0	1	0	0	0	3872	913	32	4	6256	4	CR1	1	207782848	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	671751	207782848	41467773	291	2315											
PLXNA2	5362	broad.mit.edu	37	chr1	208200698	208200698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagctgaggagcaaaaaCaaaggcaggaagacttcagg	14	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208200698	A	A	208200698	1	1	4	0	1	0	0	0	0	0	0	0	12215	493	17	3		3	PLXNA2	1	208200698	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	417850	208200698	41049923	292	2316											
PLXNA2	5362	broad.mit.edu	37	chr1	208212308	208212308	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctggactgttctcgttgtCagggttgacgcagttcagga	13	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208212308	A	A	208212308	3	1	4	1	0	0	0	0	1	0	0	0	12215	826	29	3	1194	3	PLXNA2	1	208212308	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	11610	208212308	41038313	293	2317											
PLXNA2	5362	broad.mit.edu	37	chr1	208390214	208390214	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggcacacagggcagagtCatcgggcgggtggtgatact	17	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208390214	A	A	208390214	3	1	4	1	0	0	0	0	1	0	0	0	12215	826	29	3	4754	3	PLXNA2	1	208390214	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	177906	208390214	40860407	294	2318											
LAMB3	3914	broad.mit.edu	37	chr1	209824133	209824133	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacaggtgtccccagtagaCaagtattcccaactgaaggg	10	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209824133	T	T	209824133	1	4	4	0	1	0	0	0	0	0	0	0	8684	493	17	4		4	LAMB3	1	209824133	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1433919	209824133	39426488	295	2319											
SYT14	255928	broad.mit.edu	37	chr1	210273453	210273453	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggatgtgacttttgactatGactcacaagaacagaagctt	9	7	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210273453	T	T	210273453	3	4	4	1	0	0	0	0	1	0	0	0	15589	1290	45	3	972	3	SYT14	1	210273453	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	449320	210273453	38977168	296	2320											
HHAT	55733	broad.mit.edu	37	chr1	210797046	210797046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagtgctgttttcagtcaGtttcttgttttccatgtatg	9	7	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210797046	T	T	210797046	1	4	4	0	1	0	0	0	0	0	0	0	7156	1044	36	3		3	HHAT	1	210797046	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	523593	210797046	38453575	297	2321											
LPGAT1	9926	broad.mit.edu	37	chr1	211956548	211956548	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttaactccaacaaggtaAaaaatgctaaaaaccatcat	3	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211956548	G	G	211956548	1	3	4	0	1	0	0	0	0	0	0	0	9001	29	1	5		5	LPGAT1	1	211956548	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1159502	211956548	37294073	298	2322											
KCNK2	3776	broad.mit.edu	37	chr1	215259913	215259913	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaccgtgttcaaagcattGgagcagcctcatgagatttc	10	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215259913	A	A	215259913	2	1	4	1	0	0	0	0	0	0	0	1	8136	1339	47	4		4	KCNK2	1	215259913	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	3303365	215259913	33990708	299	2323											
USH2A	7399	broad.mit.edu	37	chr1	215807697	215807697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttagtgaaacataacttaCatctaattccttgttaccat	3	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215807697	A	A	215807697	1	1	4	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	215807697	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	547784	215807697	33442924	300	2324											
USH2A	7399	broad.mit.edu	37	chr1	215823926	215823926	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctggatttttagctctgCtgctcaccactgtctcagcc	8	14	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215823926	T	T	215823926	1	4	4	0	1	0	0	0	0	0	0	0	17162	812	28	4		4	USH2A	1	215823926	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	16229	215823926	33426695	301	2325											
USH2A	7399	broad.mit.edu	37	chr1	216370014	216370014	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttctcccaggagatattgaGagagtacgaagagaggggaa	14	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216370014	C	C	216370014	3	2	4	1	0	0	0	0	1	0	0	0	17162	942	33	4	11706	4	USH2A	1	216370014	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	546088	216370014	32880607	302	2326											
GPATCH2	55105	broad.mit.edu	37	chr1	217784288	217784288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaagatactttcaaagaCaggatctggtacatttttgt	8	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217784288	A	A	217784288	3	1	4	1	0	0	0	0	1	0	0	0	6656	478	17	3	653	3	GPATCH2	1	217784288	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1414274	217784288	31466333	303	2327											
TGFB2	7042	broad.mit.edu	37	chr1	218607769	218607769	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatcccaaataaaagtgaaGaactagaagcaagatttgca	7	7	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218607769	T	T	218607769	4	4	4	1	0	0	0	0	0	1	0	0	15941	943	33	3	835	3	TGFB2	1	218607769	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	823481	218607769	30642852	304	2328											
MARK1	4139	broad.mit.edu	37	chr1	220791840	220791840	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagtctgggcgtcattctCtatacattagtcagtggctc	11	9	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220791840	T	T	220791840	2	4	4	1	0	0	0	0	0	0	0	1	9404	900	32	4		4	MARK1	1	220791840	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2184071	220791840	28458781	305	2329											
TAF1A	9015	broad.mit.edu	37	chr1	222757545	222757545	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacatgtattctgcagcTtgctgccattggtgcttcag	10	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222757545	A	A	222757545	3	1	4	1	0	0	0	0	1	0	0	0	15638	1606	56	5	1172	5	TAF1A	1	222757545	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1965705	222757545	26493076	306	2330											
C1orf55	163859	broad.mit.edu	37	chr1	226187095	226187095	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcttgatgacgcgagcatCttccaacgccccgcccctca	7	19	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226187095	T	T	226187095	1	4	4	0	1	0	0	0	0	0	0	0	2069	928	32	4		4	C1orf55	1	226187095	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	3429550	226187095	23063526	307	2331											
PARP1	142	broad.mit.edu	37	chr1	226566929	226566929	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaggccaagggtggcactGaagaccttcccacctttctc	9	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226566929	T	T	226566929	3	4	4	1	0	0	0	0	1	0	0	0	11548	1281	45	3	1433	3	PARP1	1	226566929	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	379834	226566929	22683692	308	2332											
CDC42BPA	8476	broad.mit.edu	37	chr1	227300341	227300341	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctttaatcactatcccaTgggcactacaaaatttgcct	5	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227300341	A	A	227300341	1	1	4	0	1	0	0	0	0	0	0	0	3102	1479	51	5		5	CDC42BPA	1	227300341	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	733412	227300341	21950280	309	2333											
ZNF678	339500	broad.mit.edu	37	chr1	227826879	227826879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagcctggtgggcttaCctgggtttgggcattgtctg	16	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227826879	A	A	227826879	1	1	4	0	1	0	0	0	0	0	0	0	18212	522	18	3		3	ZNF678	1	227826879	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	526538	227826879	21423742	310	2334											
PRSS38	339501	broad.mit.edu	37	chr1	228004076	228004076	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgactcccttcaccactgtcGacccgcgcaaggccaggtcc	9	19	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228004076	C	C	228004076	1	2	4	0	1	0	0	0	0	0	0	0	12733	1073	37	4		4	PRSS38	1	228004076	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	177197	228004076	21246545	311	2335											
OBSCN	84033	broad.mit.edu	37	chr1	228468497	228468497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccgggtccgcgtgcacGgtgtgtggctgcaggcacgg	20	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228468497	T	T	228468497	3	4	4	1	0	0	0	0	1	0	0	0	10907	1130	39	1	8311	1	OBSCN	1	228468497	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	464421	228468497	20782124	312	2336											
OBSCN	84033	broad.mit.edu	37	chr1	228491721	228491721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctacttccaaatgtgGcacccctgtgggaaccctga	8	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228491721	T	T	228491721	1	4	4	0	1	0	0	0	0	0	0	0	10907	1218	42	3		3	OBSCN	1	228491721	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	23224	228491721	20758900	313	2337											
NUP133	55746	broad.mit.edu	37	chr1	229588382	229588382	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtagaaagcgctcctgctCagccatttctagtattcaag	8	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229588382	A	A	229588382	4	1	4	1	0	0	0	0	0	1	0	0	10849	835	29	3	501	3	NUP133	1	229588382	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1096661	229588382	19662239	314	2338											
TAF5L	27097	broad.mit.edu	37	chr1	229730411	229730411	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagagaaagcacggggccaCggtggcctgtgaaaagcctc	15	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	229730411	G	G	229730411	3	3	4	1	0	0	0	0	1	0	0	0	15648	536	19	4	370	4	TAF5L	1	229730411	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	142029	229730411	19520210	315	2339											
URB2	9816	broad.mit.edu	37	chr1	229771777	229771778	+	Frame_Shift_Ins	INS	-	T	T													gccacggttgtttgaagaggINSttttgggggtgatctgtcgt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229771778	T	T	229771777	7	5	4	1	0	1	1	0	0	0	0	0	17151	1261	44	0	1427	0	URB2	1	229771777	Frame_Shift_Ins	INS	-	TCGA-05-4382-01A-01D-1265-08	41366	229771777	19478844	316	2340											
SIPA1L2	57568	broad.mit.edu	37	chr1	232596806	232596806	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcaaagccaaaaggttcCacatctgcgacaattccttc	7	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232596806	A	A	232596806	2	1	4	1	0	0	0	0	0	0	0	1	14443	581	21	2		2	SIPA1L2	1	232596806	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2825029	232596806	16653815	317	2341											
GPR137B	7107	broad.mit.edu	37	chr1	236341796	236341796	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgtgctggtaaagacgGgaaattgggagaggaaggtt	18	3	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236341796	T	T	236341796	4	4	4	1	0	0	0	0	0	1	0	0	6711	1233	43	2	557	2	GPR137B	1	236341796	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3744990	236341796	12908825	318	2342											
RYR2	6262	broad.mit.edu	37	chr1	237620100	237620100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtccataaatggactaGgtgtgatggctcatgcctgt	11	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237620100	T	T	237620100	1	4	4	0	1	0	0	0	0	0	0	0	13880	1015	35	2		2	RYR2	1	237620100	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1278304	237620100	11630521	319	2343											
RYR2	6262	broad.mit.edu	37	chr1	237774140	237774140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgccccccgcgcctccacGtgcagttcctgtcacacgtc	9	19	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237774140	T	T	237774140	3	4	4	1	0	0	0	0	1	0	0	0	13880	1145	40	3	4904	3	RYR2	1	237774140	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	154040	237774140	11476481	320	2344											
RYR2	6262	broad.mit.edu	37	chr1	237798224	237798224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttcaacaccactggatGtggctgcagcttcggtgatg	14	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237798224	T	T	237798224	3	4	4	1	0	0	0	0	1	0	0	0	13880	1377	48	3	6898	3	RYR2	1	237798224	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	24084	237798224	11452397	321	2345											
RYR2	6262	broad.mit.edu	37	chr1	237802371	237802371	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattgctcattcggaggcctGagtgttttggtcctgctttg	13	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237802371	A	A	237802371	3	1	4	1	0	0	0	0	1	0	0	0	13880	1291	45	4	7167	4	RYR2	1	237802371	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4147	237802371	11448250	322	2346											
RYR2	6262	broad.mit.edu	37	chr1	237906912	237906912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttaaggtcacaggatccCaacgcagcaaggtaaaacta	8	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237906912	A	A	237906912	1	1	4	0	1	0	0	0	0	0	0	0	13880	609	21	2		2	RYR2	1	237906912	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	104541	237906912	11343709	323	2347											
ZP4	57829	broad.mit.edu	37	chr1	238050727	238050727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaacagaacaaaagcttGtgttgccatcacagggttac	10	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238050727	T	T	238050727	3	4	4	1	0	0	0	0	1	0	0	0	18347	1386	48	3	966	3	ZP4	1	238050727	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	143815	238050727	11199894	324	2348											
FMN2	56776	broad.mit.edu	37	chr1	240307231	240307231	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaggccaagcctagcccaaAgatggaaccaagtctcatgg	11	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240307231	T	T	240307231	1	4	4	0	1	0	0	0	0	0	0	0	6008	87	3	5		5	FMN2	1	240307231	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2256504	240307231	8943390	325	2349											
FMN2	56776	broad.mit.edu	37	chr1	240492339	240492339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctaagggattcagttggcCagactttgaaaaactatttg	9	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240492339	A	A	240492339	1	1	4	0	1	0	0	0	0	0	0	0	6008	609	21	2		2	FMN2	1	240492339	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	185108	240492339	8758282	326	2350											
FMN2	56776	broad.mit.edu	37	chr1	240497359	240497359	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctgctattattctttttTatattgataaccaatttctt	2	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240497359	C	C	240497359	1	2	4	0	1	0	0	0	0	0	0	0	6008	1769	61	5		5	FMN2	1	240497359	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	5020	240497359	8753262	327	2351											
RGS7	6000	broad.mit.edu	37	chr1	240933205	240933205	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaccagagataagcatttaCgagcttggaggtgctgttct	12	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240933205	G	G	240933205	1	3	4	0	1	0	0	0	0	0	0	0	13419	551	19	4		4	RGS7	1	240933205	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	435846	240933205	8317416	328	2352											
RGS7	6000	broad.mit.edu	37	chr1	240969465	240969465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcttcaaatgtgtatcgtCcaggttccttcacgttctgt	7	11	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240969465	A	A	240969465	3	1	4	1	0	0	0	0	1	0	0	0	13419	855	30	3	235	3	RGS7	1	240969465	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	36260	240969465	8281156	329	2353											
KMO	8564	broad.mit.edu	37	chr1	241752098	241752098	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaatcccagatgatcacgCgatttcagacctatccatgt	8	11	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241752098	G	G	241752098	3	3	4	1	0	0	0	0	1	0	0	0	8495	768	27	4	1110	4	KMO	1	241752098	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	782633	241752098	7498523	330	2354											
WDR64	128025	broad.mit.edu	37	chr1	241953764	241953764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagttgagtgtagagataCtgtcattgggactgatgcca	13	5	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241953764	A	A	241953764	1	1	4	0	1	0	0	0	0	0	0	0	17442	580	20	3		3	WDR64	1	241953764	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	201666	241953764	7296857	331	2355											
EXO1	9156	broad.mit.edu	37	chr1	242016740	242016740	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctcgagagtgtttcacccGgtctatcaatatcacacatg	8	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242016740	C	C	242016740	3	2	4	1	0	0	0	0	1	0	0	0	5342	1116	39	4	372	4	EXO1	1	242016740	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	62976	242016740	7233881	332	2356											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242161977	242161977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtgagtgttaggaacttGgaacagacagagggaagctg	16	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242161977	T	T	242161977	1	4	4	0	1	0	0	0	0	0	0	0	9325	1363	47	2		2	MAP1LC3C	1	242161977	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	145237	242161977	7088644	333	2357											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242162004	242162004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagggaagctgttggctGctcttggtttttcagagaac	13	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242162004	T	T	242162004	1	4	4	0	1	0	0	0	0	0	0	0	9325	1334	46	3		3	MAP1LC3C	1	242162004	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	27	242162004	7088617	334	2358											
PLD5	200150	broad.mit.edu	37	chr1	242511374	242511374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggatttcttgcccgccCcctaaaagagaatttttgtt	7	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242511374	A	A	242511374	1	1	4	0	1	0	0	0	0	0	0	0	12144	638	22	2		2	PLD5	1	242511374	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	349370	242511374	6739247	335	2359											
PLD5	200150	broad.mit.edu	37	chr1	242540453	242540453	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgaggttcctttaacttgTgtacgatgaagaggtgtctg	13	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242540453	A	A	242540453	1	1	4	0	1	0	0	0	0	0	0	0	12144	1711	59	5		5	PLD5	1	242540453	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	29079	242540453	6710168	336	2360											
SDCCAG8	10806	broad.mit.edu	37	chr1	243456367	243456367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaaagttgaattcagttGcagttactggcacattttat	7	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243456367	T	T	243456367	1	4	4	0	1	0	0	0	0	0	0	0	14072	1334	46	3		3	SDCCAG8	1	243456367	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	915914	243456367	5794254	337	2361											
SDCCAG8	10806	broad.mit.edu	37	chr1	243471206	243471206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtacccataaacgataGtagtagttaacattatgatg	9	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243471206	T	T	243471206	1	4	4	0	1	0	0	0	0	0	0	0	14072	1044	36	3		3	SDCCAG8	1	243471206	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	14839	243471206	5779415	338	2362											
ZNF238	10472	broad.mit.edu	37	chr1	244218404	244218404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgagaggactcactcggGggagaagccctacacatgca	12	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244218404	T	T	244218404	3	4	4	1	0	0	0	0	1	0	0	0	17916	1232	43	2	1334	2	ZNF238	1	244218404	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	747198	244218404	5032217	339	2363											
KIF26B	55083	broad.mit.edu	37	chr1	245530532	245530532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtccccaacccaccagGccaaggtcagcctccagatg	11	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245530532	T	T	245530532	3	4	4	1	0	0	0	0	1	0	0	0	8365	1203	42	3	872	3	KIF26B	1	245530532	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1312128	245530532	3720089	340	2364											
SMYD3	64754	broad.mit.edu	37	chr1	246078725	246078725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttatctgtttcctaccaTgtactgagggtcattacttt	6	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	246078725	C	C	246078725	1	2	4	0	1	0	0	0	0	0	0	0	14937	1479	51	5		5	SMYD3	1	246078725	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	548193	246078725	3171896	341	2365											
SMYD3	64754	broad.mit.edu	37	chr1	246672462	246672462	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgtcagcctggtgagcctCggtaagggcacgtgcaggat	17	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246672462	A	A	246672462	1	1	4	0	1	0	0	0	0	0	0	0	14937	899	31	3		3	SMYD3	1	246672462	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	593737	246672462	2578159	342	2366											
CNST	163882	broad.mit.edu	37	chr1	246811284	246811284	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctccaggagaatctgccttCtgatgagagctgtctttctc	9	11	5	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246811284	T	T	246811284	3	4	4	1	0	0	0	0	1	0	0	0	3666	913	32	4	1811	4	CNST	1	246811284	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	138822	246811284	2439337	343	2367											
AHCTF1	25909	broad.mit.edu	37	chr1	247057967	247057967	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctaatacttacatagtcTgtcaaattcctcttttgtga	4	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247057967	C	C	247057967	3	2	4	1	0	0	0	0	1	0	0	0	408	1588	55	5	5094	5	AHCTF1	1	247057967	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	246683	247057967	2192654	344	2368											
ZNF496	84838	broad.mit.edu	37	chr1	247464362	247464362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattttcccacagttcggaCacacgtaggacttcttggag	10	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247464362	A	A	247464362	3	1	4	1	0	0	0	0	1	0	0	0	18072	478	17	3	544	3	ZNF496	1	247464362	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	406395	247464362	1786259	345	2369											
NLRP3	114548	broad.mit.edu	37	chr1	247588039	247588039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggagagtggcaagagcCttgcccagacatccaagacc	12	11	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588039	A	A	247588039	3	1	4	1	0	0	0	0	1	0	0	0	10573	681	24	2	1304	2	NLRP3	1	247588039	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	123677	247588039	1662582	346	2370											
NLRP3	114548	broad.mit.edu	37	chr1	247597508	247597508	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgagtgacaacgccctcGgtgacttcggaatcagactt	10	12	1	4	rs141389711	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247597508	C	C	247597508	3	2	4	1	0	0	0	0	1	0	0	0	10573	1116	39	4	2449	4	NLRP3	1	247597508	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	9469	247597508	1653113	347	2371											
C1orf150	148823	broad.mit.edu	37	chr1	247719786	247719786	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acggtaagaacagagcatctCagagtttttttgttttgttt	9	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247719786	A	A	247719786	1	1	4	0	1	0	0	0	0	0	0	0	2024	841	29	3		3	C1orf150	1	247719786	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	122278	247719786	1530835	348	2372											
OR2G2	81470	broad.mit.edu	37	chr1	247751880	247751880	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatctctccttcctgtaCcgctgcttcaccagcagtgt	6	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247751880	A	A	247751880	4	1	4	1	0	0	0	0	0	1	0	0	11092	518	18	3	221	3	OR2G2	1	247751880	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	32094	247751880	1498741	349	2373											
OR13G1	441933	broad.mit.edu	37	chr1	247835749	247835749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggccagggtaatatcagCaacatacaccatcacctcat	6	12	3	0	rs147056410	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247835749	A	A	247835749	3	1	4	1	0	0	0	0	1	0	0	0	11036	710	25	3	332	3	OR13G1	1	247835749	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	83869	247835749	1414872	350	2374											
OR13G1	441933	broad.mit.edu	37	chr1	247836100	247836101	+	Missense_Mutation	DNP	TG	AT	AT													ggtattttctgatgttagcaTggtccccagcatcttcggta							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	247836101	AT	AT	247836100	3	1	4	1	0	0	0	0	1	0	0	0	11036	1464	51	5	683	5	OR13G1	1	247836100	Missense_Mutation	DNP	TG	TCGA-05-4382-01A-01D-1265-08	351	247836100	1414521	351	2375											
OR13G1	441933	broad.mit.edu	37	chr1	247836345	247836345	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaacgctgtgattcatcCtgcttgggtgattgaatggc	11	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247836345	A	A	247836345	1	1	4	0	1	0	0	0	0	0	0	0	11036	696	24	2		2	OR13G1	1	247836345	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	245	247836345	1414276	352	2376											
OR6F1	343169	broad.mit.edu	37	chr1	247875377	247875377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggccactggcagaggggatCctgaggatggtgctgatgat	17	8	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875377	A	A	247875377	3	1	4	1	0	0	0	0	1	0	0	0	11295	854	30	3	249	3	OR6F1	1	247875377	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	39032	247875377	1375244	353	2377											
OR1C1	26188	broad.mit.edu	37	chr1	247921038	247921038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaggtgatcttcagaacaGtggagaagataagtccataa	11	5	2	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921038	T	T	247921038	3	4	4	1	0	0	0	0	1	0	0	0	11046	1029	36	3	275	3	OR1C1	1	247921038	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	45661	247921038	1329583	354	2378											
OR2W3	343171	broad.mit.edu	37	chr1	248059920	248059920	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgatattagcccacgactCccaacttgcctttttctgga	7	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059920	A	A	248059920	1	1	4	0	1	0	0	0	0	0	0	0	11127	870	30	3		3	OR2W3	1	248059920	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	138882	248059920	1190701	355	2379											
OR2L8	391190	broad.mit.edu	37	chr1	248112310	248112310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgattcttctcatcttcttgGacacccatctccacacaccc	3	17	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112310	T	T	248112310	3	4	4	1	0	0	0	0	1	0	0	0	11103	1174	41	3	153	3	OR2L8	1	248112310	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	52390	248112310	1138311	356	2380											
OR2AK2	391191	broad.mit.edu	37	chr1	248128725	248128725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagattttctacttgttgGtcttttccaatatggctgga	9	7	2	1	rs74153215	byFrequency;by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248128725	T	T	248128725	3	4	4	1	0	0	0	0	1	0	0	0	11080	1261	44	3	94	3	OR2AK2	1	248128725	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	16415	248128725	1121896	357	2381											
OR2L13	284521	broad.mit.edu	37	chr1	248166657	248166657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctaaattacatctccacCattgttcctaagatggcatc	5	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248166657	A	A	248166657	1	1	4	0	1	0	0	0	0	0	0	0	11100	609	21	2		2	OR2L13	1	248166657	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	37932	248166657	1083964	358	2382											
OR2L13	284521	broad.mit.edu	37	chr1	248166731	248166731	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgggtgtgggattcagaGtttcttcttcacgactttag	11	8	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248166731	C	C	248166731	1	2	4	0	1	0	0	0	0	0	0	0	11100	1044	36	4		4	OR2L13	1	248166731	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	74	248166731	1083890	359	2383											
OR2L3	391192	broad.mit.edu	37	chr1	248224093	248224093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttcattttcctaatggCtctaattggaaacctatcca	5	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224093	A	A	248224093	3	1	4	1	0	0	0	0	1	0	0	0	11102	797	28	3	112	3	OR2L3	1	248224093	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	57362	248224093	1026528	360	2384											
OR2L3	391192	broad.mit.edu	37	chr1	248224537	248224537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtcccagcaatggtgaCtctggcctgcatggacacct	11	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224537	A	A	248224537	3	1	4	1	0	0	0	0	1	0	0	0	11102	565	20	3	556	3	OR2L3	1	248224537	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	444	248224537	1026084	361	2385											
OR2M2	391194	broad.mit.edu	37	chr1	248343733	248343733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttatggctaccttctcctGgatcctgggctctacagatg	9	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343733	T	T	248343733	3	4	4	1	0	0	0	0	1	0	0	0	11104	1357	47	2	448	2	OR2M2	1	248343733	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	119196	248343733	906888	362	2386											
OR2M3	127062	broad.mit.edu	37	chr1	248366486	248366486	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatcttttcagtggccttCatgggaaactctgtcatggt	10	10	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248366486	A	A	248366486	3	1	4	1	0	0	0	0	1	0	0	0	11105	825	29	3	119	3	OR2M3	1	248366486	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	22753	248366486	884135	363	2387											
OR2T12	127064	broad.mit.edu	37	chr1	248458331	248458331	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcagcacaagccaaacGcaccaacacgggggcctcgc	11	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458331	A	A	248458331	3	1	4	1	0	0	0	0	1	0	0	0	11113	1087	38	4	415	4	OR2T12	1	248458331	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	91845	248458331	792290	364	2388			1	2		4	4	665	N	G_C	5.482389e-05
OR2T12	127064	broad.mit.edu	37	chr1	248458840	248458840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctggtgtggttaaagagtCctaggagaataaaatctggg	13	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458840	A	A	248458840	3	1	4	1	0	0	0	0	1	0	0	0	11113	855	30	3	924	3	OR2T12	1	248458840	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	509	248458840	791781	365	2389			1	2		4	4	665	N	G_C	5.482389e-05
OR2T12	127064	broad.mit.edu	37	chr1	248458923	248458923	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaatggaaaaatagagaaaGaagaggcttttatggtctga	11	3	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248458923	T	T	248458923	1	4	4	0	1	0	0	0	0	0	0	0	11113	957	33	3		3	OR2T12	1	248458923	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	83	248458923	791698	366	2390			1	2		4	4	665	N	G_C	5.482389e-05
OR2T12	127064	broad.mit.edu	37	chr1	248458995	248458995	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtactggatatgttatccCaggtcgtgattcaaagccct	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458995	A	A	248458995	1	1	4	0	1	0	0	0	0	0	0	0	11113	609	21	2		2	OR2T12	1	248458995	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	72	248458995	791626	367	2391			1	2		4	4	665	N	G_C	5.482389e-05
OR2T4	127074	broad.mit.edu	37	chr1	248524794	248524794	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccatgggcctttctttgGttagaacacacacacacaca	8	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248524794	T	T	248524794	1	4	4	0	1	0	0	0	0	0	0	0	11121	1276	44	3		3	OR2T4	1	248524794	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	65799	248524794	725827	368	2392											
OR2T4	127074	broad.mit.edu	37	chr1	248525336	248525336	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttctagccaccatggccTatgaccgctacgtggccatc	8	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525336	A	A	248525336	3	1	4	1	0	0	0	0	1	0	0	0	11121	1522	53	5	456	5	OR2T4	1	248525336	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	542	248525336	725285	369	2393											
OR2T1	26696	broad.mit.edu	37	chr1	248569885	248569885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttggatgattatagcagGttcctggtttgggggctctt	14	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248569885	T	T	248569885	3	4	4	1	0	0	0	0	1	0	0	0	11110	1261	44	3	592	3	OR2T1	1	248569885	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	44549	248569885	680736	370	2394											
OR2T10	127069	broad.mit.edu	37	chr1	248756307	248756307	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatgtagttgtaaatagCagctccatagaagaggctga	12	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248756307	T	T	248756307	3	4	4	1	0	0	0	0	1	0	0	0	11111	710	25	4	178	4	OR2T10	1	248756307	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	186422	248756307	494314	371	2395											
OR14I1	401994	broad.mit.edu	37	chr1	248845057	248845057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcacaggaaaccagggcCaacacatgagggatgtcacg	11	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248845057	A	A	248845057	3	1	4	1	0	0	0	0	1	0	0	0	11041	593	21	2	390	2	OR14I1	1	248845057	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	88750	248845057	405564	372	2396											
OR14I1	401994	broad.mit.edu	37	chr1	248845196	248845197	+	Missense_Mutation	DNP	CC	AA	AA													ctgccatctgatagcaccctCctgatgtcatcacggctctg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	248845197	AA	AA	248845196	3	1	4	1	0	0	0	0	1	0	0	0	11041	855	30	3	529	3	OR14I1	1	248845196	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	139	248845196	405425	373	2397											
TPO	7173	broad.mit.edu	37	chr2	1507879	1507879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcccctctctctctgtcCgtccatttgcgagtttttgt	7	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1507879	A	A	1507879	1	1	4	0	1	0	0	0	0	0	0	0	16534	667	23	1		1	TPO	2	1507879	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		1507879	241691494	374	2398											
MYT1L	23040	broad.mit.edu	37	chr2	1926489	1926489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgttcatgttctgctgcGgattcctctcctgcgggttg	13	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1926489	T	T	1926489	3	4	4	1	0	0	0	0	1	0	0	0	10201	1116	39	1	2566	1	MYT1L	2	1926489	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	418610	1926489	241272884	375	2399											
MYT1L	23040	broad.mit.edu	37	chr2	1926757	1926757	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatagtttaagggagtccaCtgtttctctaacaacatcac	6	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1926757	G	G	1926757	3	3	4	1	0	0	0	0	1	0	0	0	10201	565	20	4	2834	4	MYT1L	2	1926757	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	268	1926757	241272616	376	2400											
ADI1	55256	broad.mit.edu	37	chr2	3517828	3517828	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttctggatctccaataTgattttatactccaaattta	3	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3517828	C	C	3517828	1	2	4	0	1	0	0	0	0	0	0	0	315	1479	51	5		5	ADI1	2	3517828	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1591071	3517828	239681545	377	2401											
COLEC11	78989	broad.mit.edu	37	chr2	3665311	3665311	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcgaggcgtgcgagaacgAgagaagtctggtctgcgcag	18	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3665311	G	G	3665311	1	3	4	0	1	0	0	0	0	0	0	0	3743	319	11	5		5	COLEC11	2	3665311	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	147483	3665311	239534062	378	2402											
COLEC11	78989	broad.mit.edu	37	chr2	3691447	3691447	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcccaaggacgaggctgcCaatggcctgatggccgcata	13	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3691447	T	T	3691447	2	4	4	1	0	0	0	0	0	0	0	1	3743	581	21	4		4	COLEC11	2	3691447	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	26136	3691447	239507926	379	2403											
ASAP2	8853	broad.mit.edu	37	chr2	9531374	9531375	+	Intron	DNP	GG	CA	CA													cccgtgggctttgtagatctGgatggcggggggtgctctct							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	9531375	CA	CA	9531374	1	2	4	0	1	0	0	0	0	0	0	0	1015	1363	47	4		4	ASAP2	2	9531374	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	5839927	9531374	233667999	380	2404											
CPSF3	51692	broad.mit.edu	37	chr2	9581907	9581907	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgctttgtcagctgctGgtagctaacatacttttccc	8	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9581907	T	T	9581907	1	4	4	0	1	0	0	0	0	0	0	0	3858	1363	47	2		2	CPSF3	2	9581907	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	50533	9581907	233617466	381	2405											
ADAM17	6868	broad.mit.edu	37	chr2	9676905	9676905	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatccaccaccacgacctTgaaattttgtgaaaaacgtt	5	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9676905	G	G	9676905	3	3	4	1	0	0	0	0	1	0	0	0	238	1821	63	5	2259	5	ADAM17	2	9676905	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	94998	9676905	233522468	382	2406											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10912016	10912016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgtgagcaaagaggacttCgtgctggattctgaatatct	11	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10912016	A	A	10912016	3	1	4	1	0	0	0	0	1	0	0	0	1185	883	31	3	544	3	ATP6V1C2	2	10912016	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1235111	10912016	232287357	383	2407											
PDIA6	10130	broad.mit.edu	37	chr2	10929942	10929942	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccgggacacgatgtcggatCttgtccgcccaccgtcataa	10	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10929942	T	T	10929942	3	4	4	1	0	0	0	0	1	0	0	0	11766	913	32	4	573	4	PDIA6	2	10929942	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	17926	10929942	232269431	384	2408											
KCNF1	3754	broad.mit.edu	37	chr2	11053201	11053201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacgccgagggcaaccgcGtggagcacccgacgctggag	17	13	0	0	rs147777200		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11053201	T	T	11053201	3	4	4	1	0	0	0	0	1	0	0	0	8096	1145	40	3	651	3	KCNF1	2	11053201	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	123259	11053201	232146172	385	2409											
DDX1	1653	broad.mit.edu	37	chr2	15760265	15760265	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacactttgtgtttcatatcAgtgtttgtgtgatttattaa	7	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15760265	G	G	15760265	1	3	4	0	1	0	0	0	0	0	0	0	4374	203	7	5		5	DDX1	2	15760265	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	4707064	15760265	227439108	386	2410											
MSGN1	343930	broad.mit.edu	37	chr2	17998056	17998056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtggggccagtggcctgGtagaggtggactacaatatg	17	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17998056	T	T	17998056	3	4	4	1	0	0	0	0	1	0	0	0	9963	1261	44	3	273	3	MSGN1	2	17998056	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2237791	17998056	225201317	387	2411											
NT5C1B	93034	broad.mit.edu	37	chr2	18745191	18745191	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaagatgggacttttgggGgctccagcaaggaaaagagc	14	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18745191	A	A	18745191	2	1	4	1	0	0	0	0	0	0	0	1	10781	1219	43	4		4	NT5C1B	2	18745191	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	747135	18745191	224454182	388	2412											
NT5C1B	93034	broad.mit.edu	37	chr2	18764285	18764285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggttacaaacatgaatGtgtgtaaagaggggcaggca	14	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18764285	T	T	18764285	1	4	4	0	1	0	0	0	0	0	0	0	10781	1392	48	3		3	NT5C1B	2	18764285	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	19094	18764285	224435088	389	2413											
APOB	338	broad.mit.edu	37	chr2	21231857	21231857	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttgaagtttatctgaactGatggaatcctcaaatctgtt	7	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21231857	A	A	21231857	3	1	4	1	0	0	0	0	1	0	0	0	787	1294	45	4	5824	4	APOB	2	21231857	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2467572	21231857	221967516	390	2414											
APOB	338	broad.mit.edu	37	chr2	21234088	21234088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgagtctgaattataGtttgtgctcatgtcaatggc	11	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21234088	T	T	21234088	3	4	4	1	0	0	0	0	1	0	0	0	787	1020	36	3	8055	3	APOB	2	21234088	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2231	21234088	221965285	391	2415											
APOB	338	broad.mit.edu	37	chr2	21235298	21235298	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcaatcttgacttctttgAcaaacaaatgctgtttcttt	4	9	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21235298	T	T	21235298	3	4	4	1	0	0	0	0	1	0	0	0	787	275	10	5	9265	5	APOB	2	21235298	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1210	21235298	221964075	392	2416											
APOB	338	broad.mit.edu	37	chr2	21238276	21238276	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctcttggaaactgtggaGccataagctgtagcagatga	11	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21238276	T	T	21238276	2	4	4	1	0	0	0	0	0	0	0	1	787	958	34	3		3	APOB	2	21238276	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	2978	21238276	221961097	393	2417											
APOB	338	broad.mit.edu	37	chr2	21255456	21255456	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttgtaaagtgatggggctGagaagaaagacatggataaa	14	3	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21255456	T	T	21255456	1	4	4	0	1	0	0	0	0	0	0	0	787	1305	45	3		3	APOB	2	21255456	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	17180	21255456	221943917	394	2418											
C2orf84	653140	broad.mit.edu	37	chr2	24406434	24406434	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgccagctcgccctacttCactttcacttcacactgtgt	5	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24406434	T	T	24406434	2	4	4	1	0	0	0	0	0	0	0	1	2221	825	29	4		4	C2orf84	2	24406434	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	3150978	24406434	218792939	395	2419											
ITSN2	50618	broad.mit.edu	37	chr2	24525023	24525023	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtctatttggagtaaaaTattgccttaaaagttcaatt	6	4	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24525023	C	C	24525023	1	2	4	0	1	0	0	0	0	0	0	0	7997	1421	49	5		5	ITSN2	2	24525023	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	118589	24525023	218674350	396	2420											
HADHB	3032	broad.mit.edu	37	chr2	26502894	26502894	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaccaaagataatggcatcCgtccttcctcactggagcag	8	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26502894	T	T	26502894	3	4	4	1	0	0	0	0	1	0	0	0	7010	652	23	4	878	4	HADHB	2	26502894	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1977871	26502894	216696479	397	2421											
C2orf39	92749	broad.mit.edu	37	chr2	26644177	26644177	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattggctaaacttctgctcTgtggcaccgagttggtgaca	11	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26644177	A	A	26644177	3	1	4	1	0	0	0	0	1	0	0	0	2186	1580	55	5	275	5	C2orf39	2	26644177	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	141283	26644177	216555196	398	2422											
OTOF	9381	broad.mit.edu	37	chr2	26680812	26680812	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgaagagtggacgctgGgctcctcaggctccccaggg	16	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26680812	T	T	26680812	1	4	4	0	1	0	0	0	0	0	0	0	11397	1247	43	2		2	OTOF	2	26680812	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	36635	26680812	216518561	399	2423											
C2orf18	54978	broad.mit.edu	37	chr2	27001138	27001138	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaactgagcgccaccacccGcatggtgttggacagcttgc	13	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27001138	A	A	27001138	3	1	4	1	0	0	0	0	1	0	0	0	2180	1087	38	4	897	4	C2orf18	2	27001138	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	320326	27001138	216198235	400	2424											
CENPA	1058	broad.mit.edu	37	chr2	27016114	27016114	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggatgtgcaactggcccgGaggatccggggccttgagga	17	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016114	T	T	27016114	2	4	4	1	0	0	0	0	0	0	0	1	3256	1161	41	3		3	CENPA	2	27016114	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	14976	27016114	216183259	401	2425											
TMEM214	54867	broad.mit.edu	37	chr2	27263287	27263287	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcccctgcttttccaccaGaatgtgctgctgccactgtg	9	15	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27263287	A	A	27263287	2	1	4	1	0	0	0	0	0	0	0	1	16260	933	33	4		4	TMEM214	2	27263287	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	247173	27263287	215936086	402	2426											
KHK	3795	broad.mit.edu	37	chr2	27322123	27322123	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtcagcagaggaagccttGaggggcttgtatggtcgtgt	16	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27322123	C	C	27322123	3	2	4	1	0	0	0	0	1	0	0	0	8219	1281	45	4	785	4	KHK	2	27322123	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	58836	27322123	215877250	403	2427											
C2orf53	339779	broad.mit.edu	37	chr2	27360383	27360383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggaaagcaagcagccggGgtccagtcctgtacctgggg	17	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27360383	T	T	27360383	3	4	4	1	0	0	0	0	1	0	0	0	2196	1232	43	2	427	2	C2orf53	2	27360383	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	38260	27360383	215838990	404	2428											
CAD	790	broad.mit.edu	37	chr2	27462299	27462299	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagggcaccgtccgccGtgtggtcctgcgaggggagg	19	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462299	A	A	27462299	3	1	4	1	0	0	0	0	1	0	0	0	2591	1145	40	4	5484	4	CAD	2	27462299	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	101916	27462299	215737074	405	2429											
PLB1	151056	broad.mit.edu	37	chr2	28754964	28754964	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttttcatgctgttgccCttttattcagcaacttgact	5	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28754964	T	T	28754964	1	4	4	0	1	0	0	0	0	0	0	0	12119	696	24	4		4	PLB1	2	28754964	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1292665	28754964	214444409	406	2430											
PLB1	151056	broad.mit.edu	37	chr2	28761238	28761238	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgggggtgctggactaccTgcagcaggaggtgaggccac	18	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28761238	A	A	28761238	3	1	4	1	0	0	0	0	1	0	0	0	12119	1580	55	5	679	5	PLB1	2	28761238	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	6274	28761238	214438135	407	2431											
PLB1	151056	broad.mit.edu	37	chr2	28805085	28805085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgctgagacctccttGgcaggtcacctttgttgtgg	11	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28805085	T	T	28805085	1	4	4	0	1	0	0	0	0	0	0	0	12119	1363	47	2		2	PLB1	2	28805085	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	43847	28805085	214394288	408	2432											
C2orf71	388939	broad.mit.edu	37	chr2	29293581	29293581	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggcagagggttgagggCacacagagctgctctccgct	15	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29293581	T	T	29293581	3	4	4	1	0	0	0	0	1	0	0	0	2213	710	25	4	327	4	C2orf71	2	29293581	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	488496	29293581	213905792	409	2433											
ALK	238	broad.mit.edu	37	chr2	29416585	29416585	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagatctctgcagctgtGggtttctttgcagccttgcc	11	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29416585	T	T	29416585	2	4	4	1	0	0	0	0	0	0	0	1	525	1335	47	2		2	ALK	2	29416585	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	123004	29416585	213782788	410	2434											
ALK	238	broad.mit.edu	37	chr2	29551362	29551362	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgttcctggagagcacacaGacacacaaccatggtaagtt	9	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29551362	A	A	29551362	1	1	4	0	1	0	0	0	0	0	0	0	525	957	33	4		4	ALK	2	29551362	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	134777	29551362	213648011	411	2435											
ALK	238	broad.mit.edu	37	chr2	29754890	29754890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgcctgtgcaccgagaCggccagtgtgcagtgctcac	14	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29754890	A	A	29754890	3	1	4	1	0	0	0	0	1	0	0	0	525	536	19	3	3921	3	ALK	2	29754890	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	203528	29754890	213444483	412	2436											
CAPN13	92291	broad.mit.edu	37	chr2	30975918	30975918	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaccagcgtcatgattaCctgcagtgtttcctagaatc	8	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30975918	A	A	30975918	5	1	4	1	0	0	0	0	0	0	1	0	2652	521	18	3	973	3	CAPN13	2	30975918	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	1221028	30975918	212223455	413	2437											
GALNT14	79623	broad.mit.edu	37	chr2	31168704	31168704	+	Missense_Mutation	SNP	A	T	T													aaggtgtccaggttaatgatAtcgatcacagggcacaccac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31168704	T	T	31168704	3	4	4	1	0	0	0	0	1	0	0	0	6274	446	16	5	1007	5	GALNT14	2	31168704	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	192786	31168704	212030669	414	2438	6	2									
GALNT14	79623	broad.mit.edu	37	chr2	31168710	31168710	+	Silent	SNP	C	A	A													tccaggttaatgatatcgatCacagggcacaccacccgcgt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31168710	A	A	31168710	2	1	4	1	0	0	0	0	0	0	0	1	6274	813	29	3		3	GALNT14	2	31168710	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	6	31168710	212030663	415	2439	6	2									
BIRC6	57448	broad.mit.edu	37	chr2	32640813	32640813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataattcagcctgagcagagGaatgttagtggtggatattt	12	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32640813	T	T	32640813	3	4	4	1	0	0	0	0	1	0	0	0	1444	1165	41	3	2492	3	BIRC6	2	32640813	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1472103	32640813	210558560	416	2440											
BIRC6	57448	broad.mit.edu	37	chr2	32740258	32740258	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagcaggatcttagttcAtctttaacagatgactctaa	6	7	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32740258	T	T	32740258	2	4	4	1	0	0	0	0	0	0	0	1	1444	204	8	5		5	BIRC6	2	32740258	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	99445	32740258	210459115	417	2441											
EIF2AK2	5610	broad.mit.edu	37	chr2	37374721	37374721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgtttggtttttttgtcCttgcgatagtttgctgagaa	12	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37374721	A	A	37374721	1	1	4	0	1	0	0	0	0	0	0	0	5037	696	24	2		2	EIF2AK2	2	37374721	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4634463	37374721	205824652	418	2442											
QPCT	25797	broad.mit.edu	37	chr2	37599510	37599510	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catctacagaacatgaacttCatgaattgggtttgctcaag	8	8	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37599510	T	T	37599510	3	4	4	1	0	0	0	0	1	0	0	0	12982	826	29	4	857	4	QPCT	2	37599510	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	224789	37599510	205599863	419	2443											
DHX57	90957	broad.mit.edu	37	chr2	39074228	39074228	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacgacctagaaaaacaaGgagacaaaatagaaagcctg	9	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39074228	A	A	39074228	1	1	4	0	1	0	0	0	0	0	0	0	4553	1015	35	4		4	DHX57	2	39074228	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1474718	39074228	204125145	420	2444											
CDKL4	344387	broad.mit.edu	37	chr2	39405784	39405784	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataacagtcaccatactgttCtgcaatattggcccattggg	8	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39405784	A	A	39405784	1	1	4	0	1	0	0	0	0	0	0	0	3186	928	32	3		3	CDKL4	2	39405784	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	331556	39405784	203793589	421	2445											
KCNG3	170850	broad.mit.edu	37	chr2	42671100	42671100	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggaattcagtggagaggcTcctactatacctagcagatc	10	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42671100	A	A	42671100	3	1	4	1	0	0	0	0	1	0	0	0	8099	1551	54	5	29	5	KCNG3	2	42671100	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	3265316	42671100	200528273	422	2446											
PLEKHH2	130271	broad.mit.edu	37	chr2	43953436	43953436	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaggtcagatcaaactctGggaggctaaagtggaagagg	14	5	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43953436	C	C	43953436	3	2	4	1	0	0	0	0	1	0	0	0	12172	1357	47	4	2629	4	PLEKHH2	2	43953436	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1282336	43953436	199245937	423	2447											
SLC3A1	6519	broad.mit.edu	37	chr2	44527217	44527217	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgagatccaagtaaataaGacccaaatcccggtaaagtt	8	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44527217	T	T	44527217	3	4	4	1	0	0	0	0	1	0	0	0	14740	933	33	3	1017	3	SLC3A1	2	44527217	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	573781	44527217	198672156	424	2448											
SRBD1	55133	broad.mit.edu	37	chr2	45646910	45646910	+	Intron	SNP	C	G	G													caagattctgtgatcttcagCcacatatttgtctcacctta							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45646910	G	G	45646910	1	3	4	0	1	0	0	0	0	0	0	0	15251	754	26	4		4	SRBD1	2	45646910	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1119693	45646910	197552463	425	2449	7	2									
SRBD1	55133	broad.mit.edu	37	chr2	45646913	45646913	+	Intron	SNP	C	A	A													gattctgtgatcttcagccaCatatttgtctcaccttaaca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45646913	A	A	45646913	1	1	4	0	1	0	0	0	0	0	0	0	15251	493	17	3		3	SRBD1	2	45646913	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3	45646913	197552460	426	2450	7	2									
FBXO11	80204	broad.mit.edu	37	chr2	48059590	48059590	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacccaaatcccagctaaCgcattattggaaatttcatt	4	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48059590	A	A	48059590	2	1	4	1	0	0	0	0	0	0	0	1	5784	523	19	3		3	FBXO11	2	48059590	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2412677	48059590	195139783	427	2451											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48896865	48896865	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctttctctttttaggattCtaattctcaggtggatttaa	6	6	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48896865	T	T	48896865	3	4	4	1	0	0	0	0	1	0	0	0	15435	913	32	4	3125	4	STON1-GTF2A1L	2	48896865	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	837275	48896865	194302508	428	2452											
FSHR	2492	broad.mit.edu	37	chr2	49190600	49190600	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagtgtagactgacagctCactggcaaagacagtgaaaa	11	8	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49190600	A	A	49190600	4	1	4	1	0	0	0	0	0	1	0	0	6133	835	29	3	731	3	FSHR	2	49190600	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	293735	49190600	194008773	429	2453											
NRXN1	9378	broad.mit.edu	37	chr2	50149359	50149359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgctgagcctggatacGgctctctgccgcctgctcgg	12	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50149359	T	T	50149359	3	4	4	1	0	0	0	0	1	0	0	0	10760	1116	39	1	280	1	NRXN1	2	50149359	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	958759	50149359	193050014	430	2454											
NRXN1	9378	broad.mit.edu	37	chr2	50847255	50847255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaaaaagtcatcagaccCcagcatggtataatcttctt	6	9	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50847255	A	A	50847255	3	1	4	1	0	0	0	0	1	0	0	0	10760	623	22	2	3625	2	NRXN1	2	50847255	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	697896	50847255	192352118	431	2455											
PSME4	23198	broad.mit.edu	37	chr2	54125016	54125016	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggtatgtacctttcgaacTacaattgcatcatggttgag	9	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54125016	A	A	54125016	2	1	4	1	0	0	0	0	0	0	0	1	12815	1509	53	5		5	PSME4	2	54125016	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	3277761	54125016	189074357	432	2456											
CCDC88A	55704	broad.mit.edu	37	chr2	55522684	55522684	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaagaacctatagtatgtGttgggatgtcaagtatatga	10	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55522684	C	C	55522684	1	2	4	0	1	0	0	0	0	0	0	0	2891	1392	48	4		4	CCDC88A	2	55522684	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1397668	55522684	187676689	433	2457											
C2orf86	51057	broad.mit.edu	37	chr2	63401863	63401863	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtctgtgggttgggcaagAgggagggaggttatctggaa	19	3	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63401863	T	T	63401863	3	4	4	1	0	0	0	0	1	0	0	0	2223	304	11	5	236	5	C2orf86	2	63401863	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	7879179	63401863	179797510	434	2458											
MEIS1	4211	broad.mit.edu	37	chr2	66670112	66670112	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcctatcgatttggtgataGacgatagagaaggaggatca	13	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66670112	T	T	66670112	3	4	4	1	0	0	0	0	1	0	0	0	9560	942	33	3	584	3	MEIS1	2	66670112	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3268249	66670112	176529261	435	2459											
PPP3R1	5534	broad.mit.edu	37	chr2	68415748	68415748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagacatgaactcttccaCactcaaagaaccagaattgt	6	11	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68415748	A	A	68415748	3	1	4	1	0	0	0	0	1	0	0	0	12501	478	17	3	410	3	PPP3R1	2	68415748	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1745636	68415748	174783625	436	2460											
ARHGAP25	9938	broad.mit.edu	37	chr2	69053054	69053054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgagcagcaggttgtgagcAagggggaaggaagagtctag	18	4	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69053054	T	T	69053054	1	4	4	0	1	0	0	0	0	0	0	0	876	145	5	5		5	ARHGAP25	2	69053054	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	637306	69053054	174146319	437	2461											
AAK1	22848	broad.mit.edu	37	chr2	69706164	69706164	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttagagagcagagagcaatCaagcagggaatcttccccgg	13	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69706164	A	A	69706164	3	1	4	1	0	0	0	0	1	0	0	0	16	826	29	3	298	3	AAK1	2	69706164	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	653110	69706164	173493209	438	2462											
PCBP1	5093	broad.mit.edu	37	chr2	70315923	70315923	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaatgccaggctttcctctGagaagggcatggggtgcagc	14	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70315923	C	C	70315923	3	2	4	1	0	0	0	0	1	0	0	0	11594	1291	45	4	1050	4	PCBP1	2	70315923	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	609759	70315923	172883450	439	2463											
ATP6V1B1	525	broad.mit.edu	37	chr2	71190322	71190322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagagaggaggtgcctgggCgccgagggtttcctggatat	17	8	0	1	rs147187470		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71190322	A	A	71190322	3	1	4	1	0	0	0	0	1	0	0	0	1182	768	27	3	978	3	ATP6V1B1	2	71190322	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	874399	71190322	172009051	440	2464											
DYSF	8291	broad.mit.edu	37	chr2	71753139	71753139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcgcacagtcctggaaGgtcagtatcatggtctctgc	10	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71753139	T	T	71753139	1	4	4	0	1	0	0	0	0	0	0	0	4899	1015	35	2		2	DYSF	2	71753139	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	562817	71753139	171446234	441	2465											
DYSF	8291	broad.mit.edu	37	chr2	71816909	71816909	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacgatcagatgtgtatgtgGggctctggggagctgagtct	16	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71816909	C	C	71816909	1	2	4	0	1	0	0	0	0	0	0	0	4899	1247	43	4		4	DYSF	2	71816909	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	63770	71816909	171382464	442	2466											
CYP26B1	56603	broad.mit.edu	37	chr2	72359460	72359460	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatccacggggtgcaggaCggggaccaaggtgatgcggg	19	10	0	1	rs148075682		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72359460	T	T	72359460	3	4	4	1	0	0	0	0	1	0	0	0	4189	536	19	4	107	4	CYP26B1	2	72359460	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	542551	72359460	170839913	443	2467											
ALMS1	7840	broad.mit.edu	37	chr2	73799562	73799562	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttctttcagcatcatccaGacaaacatagagaacacatg	5	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73799562	T	T	73799562	3	4	4	1	0	0	0	0	1	0	0	0	535	942	33	3	10617	3	ALMS1	2	73799562	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1440102	73799562	169399811	444	2468											
ALMS1	7840	broad.mit.edu	37	chr2	73800051	73800051	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagcggtttaaaagcctaGagaaaagccataaaaataca	8	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73800051	C	C	73800051	3	2	4	1	0	0	0	0	1	0	0	0	535	943	33	4	11106	4	ALMS1	2	73800051	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	489	73800051	169399322	445	2469											
ACTG2	72	broad.mit.edu	37	chr2	74140716	74140716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacttggctggccgtgacCtcacggactacctcatgaag	12	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74140716	A	A	74140716	3	1	4	1	0	0	0	0	1	0	0	0	197	681	24	2	574	2	ACTG2	2	74140716	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	340665	74140716	169058657	446	2470											
TET3	200424	broad.mit.edu	37	chr2	74328907	74328907	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagcccacggctccatcctCatcgagtgtgcccggcggga	12	17	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74328907	A	A	74328907	2	1	4	1	0	0	0	0	0	0	0	1	15893	813	29	3		3	TET3	2	74328907	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	188191	74328907	168870466	447	2471											
C2orf3	6936	broad.mit.edu	37	chr2	75928379	75928379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcttgcttttcatcttcCtgactttcttcacttgtttc	4	11	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75928379	A	A	75928379	3	1	4	1	0	0	0	0	1	0	0	0	2184	680	24	2	1747	2	C2orf3	2	75928379	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1599472	75928379	167270994	448	2472											
LRRTM4	80059	broad.mit.edu	37	chr2	77746569	77746569	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaatgtctgaagcttattGtaggagaggtccagattgcg	13	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77746569	T	T	77746569	4	4	4	1	0	0	0	0	0	1	0	0	9129	1372	48	3	1360	3	LRRTM4	2	77746569	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1818190	77746569	165452804	449	2473											
DNAH6	1768	broad.mit.edu	37	chr2	84784942	84784942	+	Silent	SNP	T	G	G													cctgattcgtattttgatgcTttcaccagcccttatattaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84784942	G	G	84784942	2	3	4	1	0	0	0	0	0	0	0	1	4645	1596	56	5		5	DNAH6	2	84784942	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	7038373	84784942	158414431	450	2474	8	2									
DNAH6	1768	broad.mit.edu	37	chr2	84784945	84784945	+	Silent	SNP	C	T	T													gattcgtattttgatgctttCaccagcccttatattaacaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84784945	T	T	84784945	2	4	4	1	0	0	0	0	0	0	0	1	4645	825	29	4		4	DNAH6	2	84784945	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	3	84784945	158414428	451	2475	8	2									
ELMOD3	84173	broad.mit.edu	37	chr2	85590289	85590290	+	Splice_Site	DNP	GG	TT	TT													cttatgaatgggagccacgtGgtaaggttcccttcagggcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	85590290	TT	TT	85590289	5	4	4	1	0	0	0	0	0	0	1	0	5112	1362	47	2	209	2	ELMOD3	2	85590289	Splice_Site	DNP	GG	TCGA-05-4382-01A-01D-1265-08	805344	85590289	157609084	452	2476											
RMND5A	64795	broad.mit.edu	37	chr2	87085159	87085159	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaatcggtgctcactgatAgcattgagcctgcttcttac	8	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87085159	G	G	87085159	1	3	4	0	1	0	0	0	0	0	0	0	13508	435	15	5		5	RMND5A	2	87085159	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1494870	87085159	156114214	453	2477											
CD8B	926	broad.mit.edu	37	chr2	87085311	87085311	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgcatcccgaaacacaGctatcttctcctgttccacc	6	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87085311	T	T	87085311	3	4	4	1	0	0	0	0	1	0	0	0	3075	971	34	3	654	3	CD8B	2	87085311	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	152	87085311	156114062	454	2478											
RMND5A	64795	broad.mit.edu	37	chr2	87400064	87400064	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cataacctagaaacttgtctGagcgtggtgctgctgtctct	10	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87400064	T	T	87400064	1	4	4	0	1	0	0	0	0	0	0	0	13508	1305	45	3		3	RMND5A	2	87400064	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	314753	87400064	155799309	455	2479											
RMND5A	64795	broad.mit.edu	37	chr2	87414230	87414230	+	Intron	DEL	G	-	-													tttgtttttgaattgattttGgaatatactttgtgctacaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87414230	-	-	87414230	6	5	4	0	1	1	0	1	0	0	0	0	13508	1363	47	0		0	RMND5A	2	87414230	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	14166	87414230	155785143	456	2480											
RMND5A	64795	broad.mit.edu	37	chr2	88013512	88013512	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcttctacatgttacaTgttttctttaccaggatgac	6	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88013512	A	A	88013512	1	1	4	0	1	0	0	0	0	0	0	0	13508	1479	51	5		5	RMND5A	2	88013512	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	599282	88013512	155185861	457	2481											
SMYD1	150572	broad.mit.edu	37	chr2	88409926	88409926	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttccgccagaacgaattCatgtactacaagatgcgcga	9	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88409926	A	A	88409926	3	1	4	1	0	0	0	0	1	0	0	0	14935	825	29	3	1406	3	SMYD1	2	88409926	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	396414	88409926	154789447	458	2482											
MRPS5	64969	broad.mit.edu	37	chr2	95774150	95774150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggccatagaaaaccataaCgccctgaaggtttaaaaata	8	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95774150	A	A	95774150	3	1	4	1	0	0	0	0	1	0	0	0	9940	536	19	3	917	3	MRPS5	2	95774150	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7364224	95774150	147425223	459	2483											
ADRA2B	151	broad.mit.edu	37	chr2	96781416	96781416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcactgggggcgcccgcgcGgctgggggccctggtcgccc	19	16	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96781416	T	T	96781416	3	4	4	1	0	0	0	0	1	0	0	0	338	1116	39	1	874	1	ADRA2B	2	96781416	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1007266	96781416	146417957	460	2484											
ARID5A	10865	broad.mit.edu	37	chr2	97218091	97218091	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgtggagtcgacagggGcctacaacaggcaggtactg	14	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97218091	T	T	97218091	1	4	4	0	1	0	0	0	0	0	0	0	923	1218	42	3		3	ARID5A	2	97218091	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	436675	97218091	145981282	461	2485											
ANKRD36	375248	broad.mit.edu	37	chr2	97881328	97881328	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggggttcattgaagttttAtgtttggattcagcatgcct	13	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97881328	G	G	97881328	1	3	4	0	1	0	0	0	0	0	0	0	665	464	16	5		5	ANKRD36	2	97881328	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	663237	97881328	145318045	462	2486											
VWA3B	200403	broad.mit.edu	37	chr2	98709474	98709475	+	Intron	DNP	AG	TT	TT													gccagtcccctgttgacgttAgatgatttccaagtttttag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	98709475	TT	TT	98709474	1	4	4	0	1	0	0	0	0	0	0	0	17368	435	15	5		5	VWA3B	2	98709474	Intron	DNP	AG	TCGA-05-4382-01A-01D-1265-08	828146	98709474	144489899	463	2487											
CNGA3	1261	broad.mit.edu	37	chr2	98996642	98996642	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtcaccttccaggctgTcgcgcctcatcttcttgctg	9	14	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98996642	C	C	98996642	3	2	4	1	0	0	0	0	1	0	0	0	3630	1667	58	5	230	5	CNGA3	2	98996642	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	287168	98996642	144202731	464	2488											
INPP4A	3631	broad.mit.edu	37	chr2	99169339	99169339	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatcaacaccctgaaaacCcaagtgagttactacgcaga	7	12	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99169339	T	T	99169339	2	4	4	1	0	0	0	0	0	0	0	1	7822	610	22	4		4	INPP4A	2	99169339	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	172697	99169339	144030034	465	2489											
C2orf55	343990	broad.mit.edu	37	chr2	99413910	99413910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggctggtccaaggtcCccctccgcttctgccgagtg	14	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99413910	A	A	99413910	3	1	4	1	0	0	0	0	1	0	0	0	2198	623	22	2	393	2	C2orf55	2	99413910	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	244571	99413910	143785463	466	2490											
TSGA10	80705	broad.mit.edu	37	chr2	99721956	99721956	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatccctgaatttgtgtttCacatatattcacgtaaataa	4	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99721956	T	T	99721956	1	4	4	0	1	0	0	0	0	0	0	0	16742	841	29	4		4	TSGA10	2	99721956	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	308046	99721956	143477417	467	2491											
REV1	51455	broad.mit.edu	37	chr2	100052452	100052452	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagctaatttttactattTaaaacatcaggtctagttaa	4	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100052452	G	G	100052452	1	3	4	0	1	0	0	0	0	0	0	0	13347	1769	61	5		5	REV1	2	100052452	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	330496	100052452	143146921	468	2492											
CHST10	9486	broad.mit.edu	37	chr2	101022961	101022961	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactctgtgacagaagtcatCtatgcatgtacctaggaaca	9	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101022961	A	A	101022961	1	1	4	0	1	0	0	0	0	0	0	0	3429	928	32	3		3	CHST10	2	101022961	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	970509	101022961	142176412	469	2493											
NPAS2	4862	broad.mit.edu	37	chr2	101606699	101606699	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtccaagtcttacctttctCattgaaatgatgctccaggg	8	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101606699	A	A	101606699	1	1	4	0	1	0	0	0	0	0	0	0	10658	841	29	3		3	NPAS2	2	101606699	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	583738	101606699	141592674	470	2494											
TBC1D8	11138	broad.mit.edu	37	chr2	101655070	101655070	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgatactgacaatgatGggatgcggcagcaggctcgt	13	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101655070	T	T	101655070	2	4	4	1	0	0	0	0	0	0	0	1	15747	1335	47	2		2	TBC1D8	2	101655070	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	48371	101655070	141544303	471	2495											
IL18R1	8809	broad.mit.edu	37	chr2	103012981	103012981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattaataggggttatcttGcattttcagctgttgttgat	9	4	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103012981	T	T	103012981	1	4	4	0	1	0	0	0	0	0	0	0	7717	1334	46	3		3	IL18R1	2	103012981	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1357911	103012981	140186392	472	2496											
IL18R1	8809	broad.mit.edu	37	chr2	103013214	103013214	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaaatctcacagagttctGaagtggaaggccgataaatc	10	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103013214	A	A	103013214	2	1	4	1	0	0	0	0	0	0	0	1	7717	1277	45	4		4	IL18R1	2	103013214	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	233	103013214	140186159	473	2497											
MFSD9	84804	broad.mit.edu	37	chr2	103353315	103353315	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcagccgcggacctaCcccgggagcccagccccgcc	12	21	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103353315	A	A	103353315	1	1	4	0	1	0	0	0	0	0	0	0	9632	522	18	3		3	MFSD9	2	103353315	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	340101	103353315	139846058	474	2498											
ST6GAL2	84620	broad.mit.edu	37	chr2	107422992	107422992	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catactcaatggcttagaaaGagaaggattatcatgaccac	8	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107422992	A	A	107422992	1	1	4	0	1	0	0	0	0	0	0	0	15340	957	33	4		4	ST6GAL2	2	107422992	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	4069677	107422992	135776381	475	2499											
ST6GAL2	84620	broad.mit.edu	37	chr2	107450570	107450570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcataaccacgtgtaggagCagagttaaatctcaaaaccg	8	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107450570	A	A	107450570	3	1	4	1	0	0	0	0	1	0	0	0	15340	710	25	3	716	3	ST6GAL2	2	107450570	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	27578	107450570	135748803	476	2500											
SLC5A7	60482	broad.mit.edu	37	chr2	108608567	108608567	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcattctgtttcagctaccTgggtcggaggagggtatatc	12	8	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108608567	A	A	108608567	3	1	4	1	0	0	0	0	1	0	0	0	14784	1580	55	5	190	5	SLC5A7	2	108608567	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1157997	108608567	134590806	477	2501											
SLC5A7	60482	broad.mit.edu	37	chr2	108618378	108618378	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcgtcccctttgcattgtCacatcctgcagtcgcagaca	8	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108618378	A	A	108618378	4	1	4	1	0	0	0	0	0	1	0	0	14784	838	29	3	641	3	SLC5A7	2	108618378	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	9811	108618378	134580995	478	2502											
GCC2	9648	broad.mit.edu	37	chr2	109066018	109066018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaggtttttccctgtaaGggttctacgcgttccgtgtg	12	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109066018	T	T	109066018	1	4	4	0	1	0	0	0	0	0	0	0	6348	1015	35	2		2	GCC2	2	109066018	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	447640	109066018	134133355	479	2503											
RANBP2	5903	broad.mit.edu	37	chr2	109352661	109352661	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaatcttatgcttcttacGctttccactagagatgtgca	7	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109352661	T	T	109352661	2	4	4	1	0	0	0	0	0	0	0	1	13136	1074	38	3		3	RANBP2	2	109352661	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	286643	109352661	133846712	480	2504											
SH3RF3	344558	broad.mit.edu	37	chr2	109964320	109964320	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgcatccagcccttgcCacacgccccgccccagggaa	9	20	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109964320	G	G	109964320	3	3	4	1	0	0	0	0	1	0	0	0	14373	594	21	4	770	4	SH3RF3	2	109964320	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	611659	109964320	133235053	481	2505											
ANKRD57	65124	broad.mit.edu	37	chr2	110373544	110373544	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcagggacccagagcAgccgctggagggcagggggg	18	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110373544	T	T	110373544	3	4	4	1	0	0	0	0	1	0	0	0	683	188	7	5	1480	5	ANKRD57	2	110373544	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	409224	110373544	132825829	482	2506											
NPHP1	4867	broad.mit.edu	37	chr2	110881445	110881445	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaggttcatgaactccgtCtggtgacagcagagcttgga	12	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110881445	T	T	110881445	3	4	4	1	0	0	0	0	1	0	0	0	10674	913	32	4	80	4	NPHP1	2	110881445	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	507901	110881445	132317928	483	2507											
TMEM87B	84910	broad.mit.edu	37	chr2	112832511	112832511	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaagaactaataaatatcaGaaatgtttcaaaccaggaaa	5	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112832511	T	T	112832511	3	4	4	1	0	0	0	0	1	0	0	0	16334	942	33	3	491	3	TMEM87B	2	112832511	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1951066	112832511	130366862	484	2508											
CBWD2	150472	broad.mit.edu	37	chr2	114199041	114199042	+	Intron	INS	-	TG	TG													aagttcaataaatgtcatgtINStgcaagattttgtgtgactg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	114199042	TG	TG	114199041	6	5	4	0	1	1	1	0	0	0	0	0	2739	1740	60	0		0	CBWD2	2	114199041	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	1366530	114199041	129000332	485	2509											
ACTR3	10096	broad.mit.edu	37	chr2	114699825	114699825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagtatgatacagatggGtcaaaatggattaaacagta	9	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114699825	T	T	114699825	2	4	4	1	0	0	0	0	0	0	0	1	212	1248	44	3		3	ACTR3	2	114699825	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	500784	114699825	128499548	486	2510											
DPP10	57628	broad.mit.edu	37	chr2	116485342	116485342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatattaaagtttcaaaaGgcatcctaacgtgttggatt	8	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116485342	T	T	116485342	1	4	4	0	1	0	0	0	0	0	0	0	4767	1015	35	2		2	DPP10	2	116485342	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1785517	116485342	126714031	487	2511											
DPP10	57628	broad.mit.edu	37	chr2	116525895	116525895	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggagcccgtgttttctaGagacggcagcaaattcttta	11	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116525895	T	T	116525895	3	4	4	1	0	0	0	0	1	0	0	0	4767	942	33	3	1357	3	DPP10	2	116525895	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	40553	116525895	126673478	488	2512											
MARCO	8685	broad.mit.edu	37	chr2	119729005	119729005	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccactgcagaacctgggCactctcagttggggcttggg	13	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119729005	T	T	119729005	1	4	4	0	1	0	0	0	0	0	0	0	9403	725	25	4		4	MARCO	2	119729005	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3203110	119729005	123470368	489	2513											
MARCO	8685	broad.mit.edu	37	chr2	119734902	119734902	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtgtgtgaaaaagagagaGagagagagagtgagagtgag	18	0	0	7			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119734902	T	T	119734902	1	4	4	0	1	0	0	0	0	0	0	0	9403	957	33	3		3	MARCO	2	119734902	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5897	119734902	123464471	490	2514											
MARCO	8685	broad.mit.edu	37	chr2	119740005	119740005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaacagagggtgcagtgGgtgagtaggtgggcttgctg	20	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119740005	T	T	119740005	1	4	4	0	1	0	0	0	0	0	0	0	9403	1247	43	2		2	MARCO	2	119740005	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5103	119740005	123459368	491	2515											
MARCO	8685	broad.mit.edu	37	chr2	119750717	119750717	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgaaaactcagtgtccGtcaggattgtcggcagtagt	13	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119750717	A	A	119750717	3	1	4	1	0	0	0	0	1	0	0	0	9403	1145	40	4	1332	4	MARCO	2	119750717	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	10712	119750717	123448656	492	2516											
GLI2	2736	broad.mit.edu	37	chr2	121744024	121744024	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggccgacacctcagccctGgctgccccctccgctggtgg	14	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121744024	C	C	121744024	2	2	4	1	0	0	0	0	0	0	0	1	6502	1335	47	4		4	GLI2	2	121744024	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1993307	121744024	121455349	493	2517											
CNTNAP5	129684	broad.mit.edu	37	chr2	125504945	125504945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacttttgcaattgcgaCgctgacaaggatgaatggta	11	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125504945	A	A	125504945	3	1	4	1	0	0	0	0	1	0	0	0	3682	535	19	3	2268	3	CNTNAP5	2	125504945	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3760921	125504945	117694428	494	2518											
CNTNAP5	129684	broad.mit.edu	37	chr2	125547436	125547436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacctaaatgtattgagcCctataataccttacatttgt	4	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125547436	A	A	125547436	1	1	4	0	1	0	0	0	0	0	0	0	3682	638	22	2		2	CNTNAP5	2	125547436	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	42491	125547436	117651937	495	2519											
GYPC	2995	broad.mit.edu	37	chr2	127451549	127451549	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctcatcacagagcccttcAagcagccagggtggggggcc	13	14	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127451549	T	T	127451549	1	4	4	0	1	0	0	0	0	0	0	0	6975	145	5	5		5	GYPC	2	127451549	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1904113	127451549	115747824	496	2520											
MYO7B	4648	broad.mit.edu	37	chr2	128354000	128354000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggggctgtagggtgagGgtgagcagcccagtgacggc	21	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128354000	T	T	128354000	1	4	4	0	1	0	0	0	0	0	0	0	10177	1247	43	2		2	MYO7B	2	128354000	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	902451	128354000	114845373	497	2521											
MYO7B	4648	broad.mit.edu	37	chr2	128387322	128387322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctcggccagaacgacaGgacaggcaagacggggctgg	16	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128387322	T	T	128387322	3	4	4	1	0	0	0	0	1	0	0	0	10177	1000	35	2	4779	2	MYO7B	2	128387322	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	33322	128387322	114812051	498	2522											
UGGT1	56886	broad.mit.edu	37	chr2	128873837	128873837	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtattttctattctttcatAggaactgaggtaaacaccac	6	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128873837	G	G	128873837	5	3	4	1	0	0	0	0	0	0	1	0	17067	434	15	5	822	5	UGGT1	2	128873837	Splice_Site	SNP	A	TCGA-05-4382-01A-01D-1265-08	486515	128873837	114325536	499	2523											
UGGT1	56886	broad.mit.edu	37	chr2	128880772	128880772	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttagagcaataacaaaAacagctgtgagctcagaact	7	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128880772	C	C	128880772	3	2	4	1	0	0	0	0	1	0	0	0	17067	11	1	5	1128	5	UGGT1	2	128880772	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	6935	128880772	114318601	500	2524											
FAM123C	205147	broad.mit.edu	37	chr2	131520421	131520421	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgttcgcagatgagagctCggtgccatctctggagctga	15	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131520421	A	A	131520421	4	1	4	1	0	0	0	0	0	1	0	0	5470	893	31	3	778	3	FAM123C	2	131520421	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2639649	131520421	111678952	501	2525											
PLEKHB2	55041	broad.mit.edu	37	chr2	131949244	131949244	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagggcacaaaggaagccAgtcatgttgatccatgcctg	11	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131949244	C	C	131949244	1	2	4	0	1	0	0	0	0	0	0	0	12160	203	7	5		5	PLEKHB2	2	131949244	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	428823	131949244	111250129	502	2526											
POTEE	445582	broad.mit.edu	37	chr2	132021400	132021400	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctggcaccacaccttctAcaacgagctgcgtgtggctc	10	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132021400	G	G	132021400	3	3	4	1	0	0	0	0	1	0	0	0	12360	391	14	5	2430	5	POTEE	2	132021400	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	72156	132021400	111177973	503	2527											
CCDC74A	90557	broad.mit.edu	37	chr2	132287375	132287375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgtatgccaacccagtGggtacaggttctgggggacc	13	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132287375	T	T	132287375	1	4	4	0	1	0	0	0	0	0	0	0	2875	1363	47	2		2	CCDC74A	2	132287375	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	265975	132287375	110911998	504	2528											
MGAT5	4249	broad.mit.edu	37	chr2	135119873	135119873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagacaacagctttctggGgtttgtggttgagcagcacc	12	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135119873	T	T	135119873	3	4	4	1	0	0	0	0	1	0	0	0	9641	1232	43	2	1312	2	MGAT5	2	135119873	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2832498	135119873	108079500	505	2529											
ACMSD	130013	broad.mit.edu	37	chr2	135628551	135628551	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaatgccagcagagacCaccatagccatttgctccat	8	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135628551	G	G	135628551	2	3	4	1	0	0	0	0	0	0	0	1	144	581	21	4		4	ACMSD	2	135628551	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	508678	135628551	107570822	506	2530											
YSK4	80122	broad.mit.edu	37	chr2	135756664	135756664	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatcactagaaagtttgaaGaactacttccaaatggtgct	7	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135756664	T	T	135756664	1	4	4	0	1	0	0	0	0	0	0	0	17622	957	33	3		3	YSK4	2	135756664	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	128113	135756664	107442709	507	2531											
LCT	3938	broad.mit.edu	37	chr2	136566685	136566685	+	Frame_Shift_Del	DEL	C	-	-													cttcacccctgggggaaattCccctgagccataacctagcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136566685	-	-	136566685	7	5	4	1	0	1	0	1	0	0	0	0	8765	864	30	0	2591	0	LCT	2	136566685	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	810021	136566685	106632688	508	2532											
MCM6	4175	broad.mit.edu	37	chr2	136630466	136630466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaggcagtacaaagaacCtgaatgataattcagaacat	7	8	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136630466	A	A	136630466	1	1	4	0	1	0	0	0	0	0	0	0	9484	696	24	2		2	MCM6	2	136630466	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	63781	136630466	106568907	509	2533											
LRP1B	53353	broad.mit.edu	37	chr2	141032110	141032110	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggacagacacattcaacaCttccatcatccccaatggta	5	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141032110	T	T	141032110	3	4	4	1	0	0	0	0	1	0	0	0	9042	565	20	4	802	4	LRP1B	2	141032110	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4401644	141032110	102167263	510	2534											
LRP1B	53353	broad.mit.edu	37	chr2	141116547	141116547	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagaaaaaacaaagaagctCcttcgagtacattgctttat	7	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141116547	T	T	141116547	1	4	4	0	1	0	0	0	0	0	0	0	9042	870	30	4		4	LRP1B	2	141116547	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	84437	141116547	102082826	511	2535											
LRP1B	53353	broad.mit.edu	37	chr2	141267672	141267672	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagattactctgtgtccactGgaaaatgtctaccatttaca	6	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141267672	A	A	141267672	1	1	4	0	1	0	0	0	0	0	0	0	9042	1363	47	4		4	LRP1B	2	141267672	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	151125	141267672	101931701	512	2536											
LRP1B	53353	broad.mit.edu	37	chr2	141283457	141283457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctccacagtcattagacCcgtcgcatatccaggttggc	9	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141283457	A	A	141283457	3	1	4	1	0	0	0	0	1	0	0	0	9042	623	22	2	5989	2	LRP1B	2	141283457	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	15785	141283457	101915916	513	2537											
LRP1B	53353	broad.mit.edu	37	chr2	141294120	141294120	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaatcagaaaactttatctGaaacgagcaaacccatattg	6	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141294120	A	A	141294120	1	1	4	0	1	0	0	0	0	0	0	0	9042	1305	45	4		4	LRP1B	2	141294120	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	10663	141294120	101905253	514	2538											
LRP1B	53353	broad.mit.edu	37	chr2	141299535	141299535	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccctggcccagatttaacTatcacctgaaataaattaaa	5	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141299535	A	A	141299535	2	1	4	1	0	0	0	0	0	0	0	1	9042	1512	53	5		5	LRP1B	2	141299535	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	5415	141299535	101899838	515	2539											
LRP1B	53353	broad.mit.edu	37	chr2	141440997	141440997	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgggttatcagttgaggtgGatagtgccacctggggtcat	15	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141440997	T	T	141440997	1	4	4	0	1	0	0	0	0	0	0	0	9042	1189	41	3		3	LRP1B	2	141440997	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	141462	141440997	101758376	516	2540											
LRP1B	53353	broad.mit.edu	37	chr2	141459647	141459648	+	Intron	INS	-	T	T													aaatggtaaatcctacaaggINSgtaaagcaactggcactgaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141459648	T	T	141459647	6	5	4	0	1	1	1	0	0	0	0	0	9042	1247	43	0		0	LRP1B	2	141459647	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	18650	141459647	101739726	517	2541											
LRP1B	53353	broad.mit.edu	37	chr2	141473549	141473549	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttaaaattaccctttctCtgggtgcacagctatagatc	6	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141473549	A	A	141473549	4	1	4	1	0	0	0	0	0	1	0	0	9042	922	32	3	8003	3	LRP1B	2	141473549	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	13902	141473549	101725824	518	2542											
LRP1B	53353	broad.mit.edu	37	chr2	141597618	141597618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactgccatccatatttgcCatgttaattgtgtttccatc	5	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141597618	A	A	141597618	3	1	4	1	0	0	0	0	1	0	0	0	9042	594	21	2	8892	2	LRP1B	2	141597618	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	124069	141597618	101601755	519	2543											
LRP1B	53353	broad.mit.edu	37	chr2	141660594	141660594	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacttggctgcactttagatGattgctacaataatccacaa	6	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141660594	T	T	141660594	3	4	4	1	0	0	0	0	1	0	0	0	9042	1290	45	3	10414	3	LRP1B	2	141660594	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	62976	141660594	101538779	520	2544											
LRP1B	53353	broad.mit.edu	37	chr2	141812791	141812791	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtgaacagccccctggCattccatatggatcgacttc	9	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141812791	G	G	141812791	3	3	4	1	0	0	0	0	1	0	0	0	9042	710	25	4	12681	4	LRP1B	2	141812791	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	152197	141812791	101386582	521	2545											
ARHGAP15	55843	broad.mit.edu	37	chr2	143959748	143959748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcatatcttgaaagatGtcattcctccattggaacaa	6	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143959748	T	T	143959748	3	4	4	1	0	0	0	0	1	0	0	0	868	1377	48	3	217	3	ARHGAP15	2	143959748	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2146957	143959748	99239625	522	2546											
ZEB2	9839	broad.mit.edu	37	chr2	145162655	145162655	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctaggatcccaagtccatCtccatcatagccagtgagaa	7	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145162655	T	T	145162655	1	4	4	0	1	0	0	0	0	0	0	0	17750	928	32	4		4	ZEB2	2	145162655	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1202907	145162655	98036718	523	2547											
KIF5C	3800	broad.mit.edu	37	chr2	149806319	149806319	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttgtgcttctgccgtccTgtgctgctcactgctttctt	8	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149806319	A	A	149806319	1	1	4	0	1	0	0	0	0	0	0	0	8377	1595	55	5		5	KIF5C	2	149806319	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4643664	149806319	93393054	524	2548											
LYPD6B	130576	broad.mit.edu	37	chr2	150064991	150064991	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaatctctcctgacttgatGatgttctttaggaatcagat	8	7	3	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150064991	T	T	150064991	1	4	4	0	1	0	0	0	0	0	0	0	9203	1305	45	3		3	LYPD6B	2	150064991	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	258672	150064991	93134382	525	2549											
RIF1	55183	broad.mit.edu	37	chr2	152311424	152311424	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttagcaccacagagaccttCagattggtccaaaaagaaga	8	9	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152311424	T	T	152311424	3	4	4	1	0	0	0	0	1	0	0	0	13468	838	29	4	2442	4	RIF1	2	152311424	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2246433	152311424	90887949	526	2550											
NEB	4703	broad.mit.edu	37	chr2	152524439	152524439	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgagccttcaaaaaagtaGaggttattttattatttgac	7	4	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152524439	A	A	152524439	1	1	4	0	1	0	0	0	0	0	0	0	10397	957	33	4		4	NEB	2	152524439	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	213015	152524439	90674934	527	2551											
KCNJ3	3760	broad.mit.edu	37	chr2	155711146	155711146	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gataaacagtccaaaacctaGataagaaagtgaaatgaatt	7	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155711146	C	C	155711146	1	2	4	0	1	0	0	0	0	0	0	0	8122	957	33	4		4	KCNJ3	2	155711146	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3186707	155711146	87488227	528	2552											
GALNT5	11227	broad.mit.edu	37	chr2	158152845	158152845	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcgtgaagccaaatcgaTaaagtatataaagatgtata	7	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158152845	G	G	158152845	1	3	4	0	1	0	0	0	0	0	0	0	6278	1421	49	5		5	GALNT5	2	158152845	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2441699	158152845	85046528	529	2553											
ACVR1C	130399	broad.mit.edu	37	chr2	158397546	158397546	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaagatagaatatcacatCttgtattcagagtatcaagg	7	5	4	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158397546	A	A	158397546	1	1	4	0	1	0	0	0	0	0	0	0	222	928	32	3		3	ACVR1C	2	158397546	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	244701	158397546	84801827	530	2554											
ACVR1C	130399	broad.mit.edu	37	chr2	158399173	158399173	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggacattcatgcttattGggcactctcacatcttacta	7	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158399173	A	A	158399173	1	1	4	0	1	0	0	0	0	0	0	0	222	1363	47	4		4	ACVR1C	2	158399173	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1627	158399173	84800200	531	2555											
LY75	4065	broad.mit.edu	37	chr2	160706774	160706774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctgttccataacaaaagaAgtttaataagaatttttgta	5	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160706774	T	T	160706774	1	4	4	0	1	0	0	0	0	0	0	0	9187	87	3	5		5	LY75	2	160706774	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2307601	160706774	82492599	532	2556											
SLC4A10	57282	broad.mit.edu	37	chr2	162757507	162757507	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacatagtggacctgaactCcagcgaactggaaggttagt	13	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162757507	A	A	162757507	2	1	4	1	0	0	0	0	0	0	0	1	14765	842	30	3		3	SLC4A10	2	162757507	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2050733	162757507	80441866	533	2557											
SLC4A10	57282	broad.mit.edu	37	chr2	162761161	162761161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctaccccacgtcttgccCagggttgctagacttttcag	8	14	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162761161	A	A	162761161	1	1	4	0	1	0	0	0	0	0	0	0	14765	609	21	2		2	SLC4A10	2	162761161	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3654	162761161	80438212	534	2558											
KCNH7	90134	broad.mit.edu	37	chr2	163241508	163241508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaattaaatgtgagacgGtatgcatattacactaccta	7	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163241508	T	T	163241508	1	4	4	0	1	0	0	0	0	0	0	0	8107	1276	44	3		3	KCNH7	2	163241508	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	480347	163241508	79957865	535	2559											
SCN2A	6326	broad.mit.edu	37	chr2	166226697	166226697	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccatgttagaatatgctgAcaaggttttcacttacatat	7	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166226697	T	T	166226697	3	4	4	1	0	0	0	0	1	0	0	0	14029	275	10	5	3907	5	SCN2A	2	166226697	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2985189	166226697	76972676	536	2560											
CSRNP3	80034	broad.mit.edu	37	chr2	166536110	166536110	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggaatttcactcatacttGaaaggcccctcccaagaagg	9	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166536110	C	C	166536110	3	2	4	1	0	0	0	0	1	0	0	0	3999	1281	45	4	1619	4	CSRNP3	2	166536110	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	309413	166536110	76663263	537	2561											
TTC21B	79809	broad.mit.edu	37	chr2	166737205	166737205	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacctactgccggatttgtCcgattgctatatttccatgc	7	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166737205	A	A	166737205	2	1	4	1	0	0	0	0	0	0	0	1	16814	842	30	3		3	TTC21B	2	166737205	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	201095	166737205	76462168	538	2562											
TTC21B	79809	broad.mit.edu	37	chr2	166788366	166788366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttccagcttggtggaagCctaaaacaaaaggaactggt	11	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166788366	A	A	166788366	3	1	4	1	0	0	0	0	1	0	0	0	16814	753	26	3	3242	3	TTC21B	2	166788366	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	51161	166788366	76411007	539	2563											
SCN9A	6335	broad.mit.edu	37	chr2	167168062	167168062	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggggctctgacaccatgcCgggaggaatgtccccataga	13	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167168062	G	G	167168062	3	3	4	1	0	0	0	0	1	0	0	0	14038	652	23	4	5832	4	SCN9A	2	167168062	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	379696	167168062	76031311	540	2564											
XIRP2	129446	broad.mit.edu	37	chr2	168100460	168100460	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacccagccattagacattcTaaaagaagttcctgatgcag	7	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168100460	A	A	168100460	3	1	4	1	0	0	0	0	1	0	0	0	17557	1522	53	5	2588	5	XIRP2	2	168100460	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	932398	168100460	75098913	541	2565											
XIRP2	129446	broad.mit.edu	37	chr2	168101337	168101337	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaagatgactctgaaacAgcagtcaaattgcaaactgt	7	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168101337	T	T	168101337	2	4	4	1	0	0	0	0	0	0	0	1	17557	175	7	5		5	XIRP2	2	168101337	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	877	168101337	75098036	542	2566											
XIRP2	129446	broad.mit.edu	37	chr2	168107012	168107012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagacagccatgatgtcctCcaaaacaggaaaaccgggaa	9	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168107012	A	A	168107012	3	1	4	1	0	0	0	0	1	0	0	0	17557	855	30	3	9140	3	XIRP2	2	168107012	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	5675	168107012	75092361	543	2567											
XIRP2	129446	broad.mit.edu	37	chr2	168114871	168114871	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgcagccttatctacaGtccacccatgtttgtcagaa	6	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168114871	T	T	168114871	1	4	4	0	1	0	0	0	0	0	0	0	17557	1020	36	3		3	XIRP2	2	168114871	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	7859	168114871	75084502	544	2568											
LRP2	4036	broad.mit.edu	37	chr2	170026392	170026393	+	Intron	DNP	GG	TT	TT													cagacagatattaggtacctGgagtatagtggttactccat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	170026393	TT	TT	170026392	1	4	4	0	1	0	0	0	0	0	0	0	9043	1363	47	2		2	LRP2	2	170026392	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	1911521	170026392	73172981	545	2569											
LRP2	4036	broad.mit.edu	37	chr2	170042197	170042197	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccagtccttccaagatgaGggagtaaaaatagccatcta	9	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170042197	A	A	170042197	3	1	4	1	0	0	0	0	1	0	0	0	9043	1000	35	4	4426	4	LRP2	2	170042197	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	15805	170042197	73157176	546	2570											
LRP2	4036	broad.mit.edu	37	chr2	170055470	170055470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatatatccaccaaatatGtattatgaacagtatccgtg	7	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170055470	T	T	170055470	1	4	4	0	1	0	0	0	0	0	0	0	9043	1392	48	3		3	LRP2	2	170055470	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	13273	170055470	73143903	547	2571											
LRP2	4036	broad.mit.edu	37	chr2	170081744	170081744	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgattccaaaatccacgtGagatctattcctgagactag	7	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170081744	A	A	170081744	1	1	4	0	1	0	0	0	0	0	0	0	9043	1305	45	4		4	LRP2	2	170081744	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	26274	170081744	73117629	548	2572											
KBTBD10	10324	broad.mit.edu	37	chr2	170356090	170356090	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttcacaaagtctattctgCcagtcccatatttggagttg	7	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170356090	G	G	170356090	3	3	4	1	0	0	0	0	1	0	0	0	8060	739	26	4		4	KBTBD10	2	170356090	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	274346	170356090	72843283	549	2573											
RAPGEF4	11069	broad.mit.edu	37	chr2	173916400	173916400	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaagctaataagaaccatCaggatgtccggagttatgta	9	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173916400	G	G	173916400	3	3	4	1	0	0	0	0	1	0	0	0	13154	827	29	4	3079	4	RAPGEF4	2	173916400	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3560310	173916400	69282973	550	2574											
CDCA7	83879	broad.mit.edu	37	chr2	174232056	174232056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccacatctgaattttatAttcatttatgtcttaatgag	4	7	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174232056	G	G	174232056	1	3	4	0	1	0	0	0	0	0	0	0	3120	464	16	5		5	CDCA7	2	174232056	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	315656	174232056	68967317	551	2575											
CHRNA1	1134	broad.mit.edu	37	chr2	175622860	175622860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattataaaagtaaagtctgGgcatggtggctcatgcctgt	11	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175622860	T	T	175622860	1	4	4	0	1	0	0	0	0	0	0	0	3412	1247	43	2		2	CHRNA1	2	175622860	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1390804	175622860	67576513	552	2576											
ATF2	1386	broad.mit.edu	37	chr2	175986270	175986270	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcctcgttggtaaaacgcTgtggcaaaaagttttaaaat	9	6	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175986270	A	A	175986270	5	1	4	1	0	0	0	0	0	0	1	0	1084	1594	55	5	1456	5	ATF2	2	175986270	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	363410	175986270	67213103	553	2577											
HOXD3	3232	broad.mit.edu	37	chr2	177036982	177036982	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggacgactgccggaggctCccaaactgacgcatctgtag	13	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177036982	T	T	177036982	3	4	4	1	0	0	0	0	1	0	0	0	7390	855	30	4	1285	4	HOXD3	2	177036982	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1050712	177036982	66162391	554	2578											
MTX2	10651	broad.mit.edu	37	chr2	177193185	177193185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatataatctttcttatGggttaaagttattgagaaat	6	2	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177193185	T	T	177193185	1	4	4	0	1	0	0	0	0	0	0	0	10062	1363	47	2		2	MTX2	2	177193185	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	156203	177193185	66006188	555	2579											
AGPS	8540	broad.mit.edu	37	chr2	178305762	178305762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgtatcataccaattgGtggtaggtattgtgcctttt	9	6	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178305762	T	T	178305762	3	4	4	1	0	0	0	0	1	0	0	0	394	1261	44	3	729	3	AGPS	2	178305762	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1112577	178305762	64893611	556	2580											
PDE11A	50940	broad.mit.edu	37	chr2	178534306	178534306	+	Intron	DEL	T	-	-													gttctgccacctgaaacataTaaatattttaatctgtgatt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	178534306	-	-	178534306	6	5	4	0	1	1	0	1	0	0	0	0	11725	1421	49	0		0	PDE11A	2	178534306	Intron	DEL	T	TCGA-05-4382-01A-01D-1265-08	228544	178534306	64665067	557	2581											
PDE11A	50940	broad.mit.edu	37	chr2	178592737	178592737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaactgcttggatcaccCaagacagacatcttacctca	8	12	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178592737	A	A	178592737	1	1	4	0	1	0	0	0	0	0	0	0	11725	609	21	2		2	PDE11A	2	178592737	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	58431	178592737	64606636	558	2582											
TTN	7273	broad.mit.edu	37	chr2	179403316	179403316	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctgcgaggtctgctcagCccagtctcattctcagcaaa	9	13	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179403316	T	T	179403316	2	4	4	1	0	0	0	0	0	0	0	1	16861	726	26	4		4	TTN	2	179403316	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	810579	179403316	63796057	559	2583											
TTN	7273	broad.mit.edu	37	chr2	179435496	179435496	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gattcaccagcatgaaccacGattgtgtctttgtattttgg	9	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179435496	T	T	179435496	2	4	4	1	0	0	0	0	0	0	0	1	16861	1048	37	3		3	TTN	2	179435496	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	32180	179435496	63763877	560	2584											
TTN	7273	broad.mit.edu	37	chr2	179457285	179457285	+	Frame_Shift_Del	DEL	G	-	-													cttttttccaagttacttttGggaatggcactcctttgatg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179457285	-	-	179457285	7	5	4	1	0	1	0	1	0	0	0	0	16861	1348	47	0	48780	0	TTN	2	179457285	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	21789	179457285	63742088	561	2585											
TTN	7273	broad.mit.edu	37	chr2	179468758	179468758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccactttggttattggtGctcggctaacacgtgaccaa	9	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179468758	T	T	179468758	3	4	4	1	0	0	0	0	1	0	0	0	16861	1319	46	3	53361	3	TTN	2	179468758	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	11473	179468758	63730615	562	2586											
TTN	7273	broad.mit.edu	37	chr2	179479056	179479056	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatctgtgatgtcaaaggcAgctggtggtccgggtttatc	13	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179479056	T	T	179479056	2	4	4	1	0	0	0	0	0	0	0	1	16861	175	7	5		5	TTN	2	179479056	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	10298	179479056	63720317	563	2587											
TTN	7273	broad.mit.edu	37	chr2	179494224	179494227	+	Intron	DEL	AATA	-	-													tcattttgtaatcccaaaagAataaatagagacttagatat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179494227	-	-	179494224	6	5	4	0	1	1	0	1	0	0	0	0	16861	261	9	0		0	TTN	2	179494224	Intron	DEL	AATA	TCGA-05-4382-01A-01D-1265-08	15168	179494224	63705149	564	2588											
TTN	7273	broad.mit.edu	37	chr2	179500111	179500111	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtgttttggtgtgttaTttggctttacacatacgcaa	9	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179500111	G	G	179500111	1	3	4	0	1	0	0	0	0	0	0	0	16861	1508	52	5		5	TTN	2	179500111	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	5887	179500111	63699262	565	2589											
TTN	7273	broad.mit.edu	37	chr2	179590276	179590276	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttctctttaagccactgGacaaaaataggctgggcgcc	9	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179590276	T	T	179590276	2	4	4	1	0	0	0	0	0	0	0	1	16861	1161	41	3		3	TTN	2	179590276	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	90165	179590276	63609097	566	2590											
TTN	7273	broad.mit.edu	37	chr2	179596304	179596304	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatcttctttatgaaggatGggggttctaacagaagaatg	12	5	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179596304	A	A	179596304	3	1	4	1	0	0	0	0	1	0	0	0	16861	1348	47	4	87556	4	TTN	2	179596304	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6028	179596304	63603069	567	2591											
TTN	7273	broad.mit.edu	37	chr2	179597928	179597928	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaggccatttgttgggtttCaaatgcatatgtagcatcat	9	6	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179597928	G	G	179597928	1	3	4	0	1	0	0	0	0	0	0	0	16861	841	29	4		4	TTN	2	179597928	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1624	179597928	63601445	568	2592											
TTN	7273	broad.mit.edu	37	chr2	179598427	179598427	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctccaaaactaatctgaAcatcagggattatcaagact	6	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179598427	G	G	179598427	3	3	4	1	0	0	0	0	1	0	0	0	16861	43	2	5	89080	5	TTN	2	179598427	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	499	179598427	63600946	569	2593											
TTN	7273	broad.mit.edu	37	chr2	179605626	179605626	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaatggattgcaattcctGagctcccaaaggaagctgac	9	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179605626	C	C	179605626	3	2	4	1	0	0	0	0	1	0	0	0	16861	1299	45	4	92455	4	TTN	2	179605626	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7199	179605626	63593747	570	2594											
TTN	7273	broad.mit.edu	37	chr2	179615422	179615422	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaattctctcaaatcatccTtttttattctttcactagct	2	10	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179615422	A	A	179615422	3	1	4	1	0	0	0	0	1	0	0	0	16861	1609	56	5	98592	5	TTN	2	179615422	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	9796	179615422	63583951	571	2595											
TTN	7273	broad.mit.edu	37	chr2	179633572	179633572	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctttaaccatttgtaagaGatgccttcatagttcactgt	6	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179633572	T	T	179633572	2	4	4	1	0	0	0	0	0	0	0	1	16861	932	33	3		3	TTN	2	179633572	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	18150	179633572	63565801	572	2596											
TTN	7273	broad.mit.edu	37	chr2	179635847	179635847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgaaatgaaaatttatgGtatccaaaatggccatatcg	7	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179635847	T	T	179635847	1	4	4	0	1	0	0	0	0	0	0	0	16861	1276	44	3		3	TTN	2	179635847	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2275	179635847	63563526	573	2597											
TTN	7273	broad.mit.edu	37	chr2	179638849	179638850	+	Intron	DNP	GG	AT	AT													tggggcgggctgtgaaatatGgggagaaaaagaatgttatg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	179638850	AT	AT	179638849	1	1	4	0	1	0	0	0	0	0	0	0	16861	1363	47	4		4	TTN	2	179638849	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	3002	179638849	63560524	574	2598											
TTN	7273	broad.mit.edu	37	chr2	179648929	179648929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctggtgtgtcagcgaagggGaactgtggcaagggtgtggg	20	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179648929	T	T	179648929	3	4	4	1	0	0	0	0	1	0	0	0	16861	1165	41	3	108733	3	TTN	2	179648929	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	10080	179648929	63550444	575	2599											
CCDC141	285025	broad.mit.edu	37	chr2	179718048	179718048	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttaccttgaacattttccCtgaatacactggtgtgctga	7	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179718048	T	T	179718048	1	4	4	0	1	0	0	0	0	0	0	0	2801	696	24	4		4	CCDC141	2	179718048	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	69119	179718048	63481325	576	2600											
CCDC141	285025	broad.mit.edu	37	chr2	179733833	179733833	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggatttttcagacatcccttCtaagccttacctcttccttg	5	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179733833	G	G	179733833	1	3	4	0	1	0	0	0	0	0	0	0	2801	928	32	4		4	CCDC141	2	179733833	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	15785	179733833	63465540	577	2601											
ITGA4	3676	broad.mit.edu	37	chr2	182389954	182389954	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaagaggaaatggacaatCtaaagcacagcagagtgact	11	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182389954	A	A	182389954	3	1	4	1	0	0	0	0	1	0	0	0	7948	912	32	3	2357	3	ITGA4	2	182389954	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2656121	182389954	60809419	578	2602											
CERKL	375298	broad.mit.edu	37	chr2	182423172	182423172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatttgctagtggggatgCcagaagtctggatctttcaa	11	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182423172	A	A	182423172	1	1	4	0	1	0	0	0	0	0	0	0	3298	754	26	3		3	CERKL	2	182423172	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	33218	182423172	60776201	579	2603											
NCKAP1	10787	broad.mit.edu	37	chr2	183902768	183902768	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgccgacgccccggtcgttGaggatggtgagcttctccgc	14	13	1	2	rs138660373	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183902768	A	A	183902768	2	1	4	1	0	0	0	0	0	0	0	1	10316	1277	45	4		4	NCKAP1	2	183902768	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1479596	183902768	59296605	580	2604											
ZNF804A	91752	broad.mit.edu	37	chr2	185800875	185800875	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggatttagcagaaaaagtaGatttgtccccagtgcttgtc	10	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185800875	T	T	185800875	3	4	4	1	0	0	0	0	1	0	0	0	18299	942	33	3	766	3	ZNF804A	2	185800875	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1898107	185800875	57398498	581	2605											
ZNF804A	91752	broad.mit.edu	37	chr2	185803359	185803359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctcccaccccctagcaCacctctgcagcctttgcctt	5	21	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803359	A	A	185803359	3	1	4	1	0	0	0	0	1	0	0	0	18299	478	17	3	3250	3	ZNF804A	2	185803359	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2484	185803359	57396014	582	2606											
ITGAV	3685	broad.mit.edu	37	chr2	187541904	187541904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgatgtgacagtaataatGgtttttcttcaactgacaga	8	6	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187541904	T	T	187541904	1	4	4	0	1	0	0	0	0	0	0	0	7958	1363	47	2		2	ITGAV	2	187541904	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1738545	187541904	55657469	583	2607											
FAM171B	165215	broad.mit.edu	37	chr2	187608278	187608278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggctatttgaagacactGttttaattactggaaaatta	7	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187608278	T	T	187608278	3	4	4	1	0	0	0	0	1	0	0	0	5536	1377	48	3	551	3	FAM171B	2	187608278	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	66374	187608278	55591095	584	2608											
FAM171B	165215	broad.mit.edu	37	chr2	187627476	187627476	+	Frame_Shift_Del	DEL	C	-	-													ctaaaagaaggggcagaccaCcactagccaaaagagatagc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	187627476	-	-	187627476	7	5	4	1	0	1	0	1	0	0	0	0	5536	507	18	0	2437	0	FAM171B	2	187627476	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	19198	187627476	55571897	585	2609											
ZSWIM2	151112	broad.mit.edu	37	chr2	187702135	187702135	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcagctactagtttgctaGagtttttgaattcctccaaa	7	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187702135	T	T	187702135	3	4	4	1	0	0	0	0	1	0	0	0	18370	942	33	3	1280	3	ZSWIM2	2	187702135	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	74659	187702135	55497238	586	2610											
COL3A1	1281	broad.mit.edu	37	chr2	189858694	189858694	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgatacatttattttcacaCaaacaacttcaaatatatac	1	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189858694	G	G	189858694	1	3	4	0	1	0	0	0	0	0	0	0	3720	493	17	4		4	COL3A1	2	189858694	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2156559	189858694	53340679	587	2611											
COL5A2	1290	broad.mit.edu	37	chr2	189898877	189898877	+	Frame_Shift_Del	DEL	G	-	-													acaggagcaagatctatgatGggcaagcgtgccacattctg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	189898877	-	-	189898877	7	5	4	1	0	1	0	1	0	0	0	0	3729	1335	47	0	84	0	COL5A2	2	189898877	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	40183	189898877	53300496	588	2612											
WDR75	84128	broad.mit.edu	37	chr2	190323581	190323582	+	Missense_Mutation	DNP	TG	AT	AT													atcgcatctggtcacatggaTggcaaaattcgtctttggtc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	190323582	AT	AT	190323581	3	1	4	1	0	0	0	0	1	0	0	0	17452	1461	51	5	698	5	WDR75	2	190323581	Missense_Mutation	DNP	TG	TCGA-05-4382-01A-01D-1265-08	424704	190323581	52875792	589	2613											
ANKAR	150709	broad.mit.edu	37	chr2	190554279	190554279	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgatattacaaaggatccaGactttaatgaaatctatgat	6	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190554279	T	T	190554279	3	4	4	1	0	0	0	0	1	0	0	0	623	942	33	3	634	3	ANKAR	2	190554279	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	230698	190554279	52645094	590	2614											
PMS1	5378	broad.mit.edu	37	chr2	190660675	190660675	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtcaatttgttgtatagctGaggtaaggtaattatattgg	12	2	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190660675	T	T	190660675	4	4	4	1	0	0	0	0	0	1	0	0	12237	1291	45	3	319	3	PMS1	2	190660675	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	106396	190660675	52538698	591	2615											
STAT4	6775	broad.mit.edu	37	chr2	191941029	191941029	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataaccacagctacatgcAttggatttccatgaaatttt	5	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191941029	G	G	191941029	3	3	4	1	0	0	0	0	1	0	0	0	15385	217	8	5	2034	5	STAT4	2	191941029	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1280354	191941029	51258344	592	2616											
MYO1B	4430	broad.mit.edu	37	chr2	192194697	192194697	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcatacagatccctacgAgatcaagataaggaccaatg	9	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192194697	T	T	192194697	2	4	4	1	0	0	0	0	0	0	0	1	10163	291	11	5		5	MYO1B	2	192194697	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	253668	192194697	51004676	593	2617											
TMEFF2	23671	broad.mit.edu	37	chr2	193044448	193044448	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaagttatatttgctaGtaaaacatattcaaaaatat	6	3	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193044448	C	C	193044448	1	2	4	0	1	0	0	0	0	0	0	0	16137	1044	36	4		4	TMEFF2	2	193044448	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	849751	193044448	50154925	594	2618											
DNAH7	56171	broad.mit.edu	37	chr2	196746483	196746483	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacattcttaggaagattaTgcacagtttaatacgcagat	7	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196746483	C	C	196746483	1	2	4	0	1	0	0	0	0	0	0	0	4646	1479	51	5		5	DNAH7	2	196746483	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	3702035	196746483	46452890	595	2619											
DNAH7	56171	broad.mit.edu	37	chr2	196859619	196859619	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgacattgggccagcatgtCctcatcctcagacagactgt	9	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196859619	A	A	196859619	1	1	4	0	1	0	0	0	0	0	0	0	4646	870	30	3		3	DNAH7	2	196859619	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	113136	196859619	46339754	596	2620											
CCDC150	284992	broad.mit.edu	37	chr2	197541345	197541345	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgctgaaaagagaacagctGtgcaaaaagagctgctagaa	11	6	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197541345	C	C	197541345	3	2	4	1	0	0	0	0	1	0	0	0	2811	1377	48	4	1376	4	CCDC150	2	197541345	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	681726	197541345	45658028	597	2621											
PGAP1	80055	broad.mit.edu	37	chr2	197784946	197784946	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcctcaccatatgcaattCtgaattacgcaaatttgaaa	5	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197784946	A	A	197784946	1	1	4	0	1	0	0	0	0	0	0	0	11872	928	32	3		3	PGAP1	2	197784946	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	243601	197784946	45414427	598	2622											
PLCL1	5334	broad.mit.edu	37	chr2	198950911	198950912	+	Missense_Mutation	DNP	GG	TT	TT													gatgacatctttaaaatagcGgttcatccattacgagaagc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	198950912	TT	TT	198950911	3	4	4	1	0	0	0	0	1	0	0	0	12134	1103	39	1	2676	1	PLCL1	2	198950911	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	1165965	198950911	44248462	599	2623											
SATB2	23314	broad.mit.edu	37	chr2	200173681	200173681	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagttcacacagccagccCtgtagagagaggaggtcgct	13	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200173681	G	G	200173681	5	3	4	1	0	0	0	0	0	0	1	0	13966	695	24	4	667	4	SATB2	2	200173681	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	1222770	200173681	43025692	600	2624											
SGOL2	151246	broad.mit.edu	37	chr2	201448175	201448175	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttttctactttgcagcaaGatgagaagatgaagtgaatt	9	4	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201448175	A	A	201448175	2	1	4	1	0	0	0	0	0	0	0	1	14330	942	33	4		4	SGOL2	2	201448175	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1274494	201448175	41751198	601	2625											
NRP2	8828	broad.mit.edu	37	chr2	206617571	206617571	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttttagacaaagatttgcAgctcccttcgggattcaatt	7	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206617571	T	T	206617571	3	4	4	1	0	0	0	0	1	0	0	0	10756	188	7	5	1989	5	NRP2	2	206617571	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	5169396	206617571	36581802	602	2626											
NRP2	8828	broad.mit.edu	37	chr2	206631690	206631690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggcactagcaacacctGtagatgcgggaaggggattg	15	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206631690	T	T	206631690	1	4	4	0	1	0	0	0	0	0	0	0	10756	1392	48	3		3	NRP2	2	206631690	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	14119	206631690	36567683	603	2627											
NDUFS1	4719	broad.mit.edu	37	chr2	207008741	207008742	+	Splice_Site	DNP	CC	AA	AA													actatttatttcaaattttaCcattccagctacgcgagaga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	207008742	AA	AA	207008741	5	1	4	1	0	0	0	0	0	0	1	0	10386	521	18	3	1235	3	NDUFS1	2	207008741	Splice_Site	DNP	CC	TCGA-05-4382-01A-01D-1265-08	377051	207008741	36190632	604	2628											
ZDBF2	57683	broad.mit.edu	37	chr2	207176120	207176120	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caagcgctatggcaaatcctCctccaaagcgacctgtgcgg	10	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207176120	G	G	207176120	3	3	4	1	0	0	0	0	1	0	0	0	17725	855	30	4	6878	4	ZDBF2	2	207176120	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	167379	207176120	36023253	605	2629											
ZDBF2	57683	broad.mit.edu	37	chr2	207176151	207176151	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgtgcgggcttcttgccGcgttgcaagaaggaggaaga	15	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207176151	C	C	207176151	3	2	4	1	0	0	0	0	1	0	0	0	17725	1087	38	4	6909	4	ZDBF2	2	207176151	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	31	207176151	36023222	606	2630											
ADAM23	8745	broad.mit.edu	37	chr2	207435397	207435397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacggccattgtatgtggcCcagttgatgtgctgattttc	11	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207435397	A	A	207435397	1	1	4	0	1	0	0	0	0	0	0	0	245	638	22	2		2	ADAM23	2	207435397	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	259246	207435397	35763976	607	2631											
MDH1B	130752	broad.mit.edu	37	chr2	207621882	207621882	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagagacatgagagaatgtCtcagaaagcaagatatttga	10	4	1	6			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207621882	A	A	207621882	1	1	4	0	1	0	0	0	0	0	0	0	9502	928	32	3		3	MDH1B	2	207621882	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	186485	207621882	35577491	608	2632											
CRYGB	1419	broad.mit.edu	37	chr2	209010557	209010557	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccatccattgctggtagtCagggtactccccacgccgca	10	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209010557	A	A	209010557	3	1	4	1	0	0	0	0	1	0	0	0	3947	826	29	3	342	3	CRYGB	2	209010557	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1388675	209010557	34188816	609	2633											
CRYGA	1418	broad.mit.edu	37	chr2	209028143	209028143	+	Frame_Shift_Del	DEL	G	-	-													gcaattgtagcagcgaccctGaaagtctcggtcctcgtaga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	209028143	-	-	209028143	7	5	4	1	0	1	0	1	0	0	0	0	3946	1299	45	0	495	0	CRYGA	2	209028143	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	17586	209028143	34171230	610	2634											
IDH1	3417	broad.mit.edu	37	chr2	209104020	209104020	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatagaggtttccaaatgtCtcatagttccccaaaacaga	6	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209104020	T	T	209104020	1	4	4	0	1	0	0	0	0	0	0	0	7564	928	32	4		4	IDH1	2	209104020	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	75877	209104020	34095353	611	2635											
PIKFYVE	200576	broad.mit.edu	37	chr2	209209793	209209793	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatgatttacttttaaagaaGaagttaatgtttaacgtttt	6	2	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209209793	A	A	209209793	1	1	4	0	1	0	0	0	0	0	0	0	12019	957	33	4		4	PIKFYVE	2	209209793	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	105773	209209793	33989580	612	2636											
PTH2R	5746	broad.mit.edu	37	chr2	209357890	209357890	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagaggaacctcaatcaatGattattgctgtcattgaaat	8	6	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209357890	T	T	209357890	1	4	4	0	1	0	0	0	0	0	0	0	12866	1305	45	3		3	PTH2R	2	209357890	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	148097	209357890	33841483	613	2637											
MYL1	4632	broad.mit.edu	37	chr2	211159216	211159216	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcacaatttaaacttgaaaAgttattctaggttatctgaa	6	5	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211159216	T	T	211159216	1	4	4	0	1	0	0	0	0	0	0	0	10137	87	3	5		5	MYL1	2	211159216	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1801326	211159216	32040157	614	2638											
CPS1	1373	broad.mit.edu	37	chr2	211464252	211464252	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacagccagatgggttaattCtgggcatgggtggccagaca	14	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211464252	A	A	211464252	3	1	4	1	0	0	0	0	1	0	0	0	3855	912	32	3	1592	3	CPS1	2	211464252	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	305036	211464252	31735121	615	2639											
CPS1	1373	broad.mit.edu	37	chr2	211539650	211539650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccggccaagattccttGgtgtggctgaacaattacac	9	11	0	2	rs140578009	byFrequency;by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211539650	T	T	211539650	3	4	4	1	0	0	0	0	1	0	0	0	3855	1348	47	2	4286	2	CPS1	2	211539650	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	75398	211539650	31659723	616	2640											
ERBB4	2066	broad.mit.edu	37	chr2	212288980	212288980	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctcgcgttggaattccAtcatagggttttcctccaaa	7	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212288980	T	T	212288980	3	4	4	1	0	0	0	0	1	0	0	0	5251	214	8	5	1184	5	ERBB4	2	212288980	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	749330	212288980	30910393	617	2641											
ERBB4	2066	broad.mit.edu	37	chr2	212495163	212495163	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaaaatccccaaacacatGaagaggagaaagaaatacct	7	8	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212495163	A	A	212495163	1	1	4	0	1	0	0	0	0	0	0	0	5251	1305	45	4		4	ERBB4	2	212495163	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	206183	212495163	30704210	618	2642											
PECR	55825	broad.mit.edu	37	chr2	216914082	216914082	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagttctccacagcagtctgGgaataaataactccctgtgt	8	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216914082	A	A	216914082	2	1	4	1	0	0	0	0	0	0	0	1	11811	1219	43	4		4	PECR	2	216914082	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	4418919	216914082	26285291	619	2643											
MARCH4	57574	broad.mit.edu	37	chr2	217124200	217124200	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcagggccctgctcaggGgcaggggtgcctgcggtctc	19	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217124200	T	T	217124200	2	4	4	1	0	0	0	0	0	0	0	1	9395	1219	43	2		2	MARCH4	2	217124200	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	210118	217124200	26075173	620	2644											
TNS1	7145	broad.mit.edu	37	chr2	218749786	218749786	+	Frame_Shift_Del	DEL	C	-	-													gcatcatcaaggtcctccttCccaaagacaacccccaggtc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	218749786	-	-	218749786	7	5	4	1	0	1	0	1	0	0	0	0	16466	842	30	0	4444	0	TNS1	2	218749786	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	1625586	218749786	24449587	621	2645											
AAMP	14	broad.mit.edu	37	chr2	219131295	219131295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacaggacaggtgcccgagGatgccactccatccactgga	11	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219131295	A	A	219131295	3	1	4	1	0	0	0	0	1	0	0	0	17	1174	41	4	782	4	AAMP	2	219131295	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	381509	219131295	24068078	622	2646											
TTLL4	9654	broad.mit.edu	37	chr2	219611007	219611007	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactttggactaggccaagaGgagggggatgatgtgagtag	18	4	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219611007	A	A	219611007	1	1	4	0	1	0	0	0	0	0	0	0	16855	1015	35	4		4	TTLL4	2	219611007	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	479712	219611007	23588366	623	2647											
PRKAG3	53632	broad.mit.edu	37	chr2	219695107	219695108	+	Intron	INS	-	T	T													tggcctggaccggggacctgINStttgggggaggaggggaaga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219695108	T	T	219695107	6	5	4	0	1	1	1	0	0	0	0	0	12608	1392	48	0		0	PRKAG3	2	219695107	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	84100	219695107	23504266	624	2648											
CCDC108	255101	broad.mit.edu	37	chr2	219893021	219893021	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtagagcgtcaggccccGggccaggtgtgtgcggtacc	19	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219893021	T	T	219893021	2	4	4	1	0	0	0	0	0	0	0	1	2769	1115	39	1		1	CCDC108	2	219893021	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	197914	219893021	23306352	625	2649											
CCDC108	255101	broad.mit.edu	37	chr2	219894146	219894146	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtggtggatgagacaggcCacacgccgaaagcagatgat	15	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219894146	T	T	219894146	2	4	4	1	0	0	0	0	0	0	0	1	2769	581	21	4		4	CCDC108	2	219894146	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1125	219894146	23305227	626	2650											
FAM134A	79137	broad.mit.edu	37	chr2	220046857	220046857	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgtcctcaagctctgtcaAggcaagccctggactcggag	12	14	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220046857	T	T	220046857	3	4	4	1	0	0	0	0	1	0	0	0	5491	63	3	5	1172	5	FAM134A	2	220046857	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	152711	220046857	23152516	627	2651											
FAM134A	79137	broad.mit.edu	37	chr2	220046971	220046971	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttcaatggggcagggtccCccccagatggagtgaaatgc	13	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220046971	T	T	220046971	3	4	4	1	0	0	0	0	1	0	0	0	5491	623	22	4	1286	4	FAM134A	2	220046971	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	114	220046971	23152402	628	2652											
DNPEP	23549	broad.mit.edu	37	chr2	220238938	220238938	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgacaatccactttaaTaatccagcttcagctcagct	6	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220238938	C	C	220238938	1	2	4	0	1	0	0	0	0	0	0	0	4719	1421	49	5		5	DNPEP	2	220238938	3'UTR	SNP	T	TCGA-05-4382-01A-01D-1265-08	191967	220238938	22960435	629	2653											
SPEG	10290	broad.mit.edu	37	chr2	220352934	220352934	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacttccccccagtcttccAcatcaaactcaaggaccagg	6	16	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220352934	T	T	220352934	3	4	4	1	0	0	0	0	1	0	0	0	15154	159	6	5	7898	5	SPEG	2	220352934	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	113996	220352934	22846439	630	2654											
ACCN4	55515	broad.mit.edu	37	chr2	220399952	220399952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccccctgcaacctgacaCgctatgggaaagagatctcc	8	16	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220399952	A	A	220399952	3	1	4	1	0	0	0	0	1	0	0	0	131	536	19	3	1538	3	ACCN4	2	220399952	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	47018	220399952	22799421	631	2655											
TMEM198	130612	broad.mit.edu	37	chr2	220413975	220413975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacctcctcgggctcccCtcagaggtccccgggctcct	11	18	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220413975	A	A	220413975	3	1	4	1	0	0	0	0	1	0	0	0	16242	681	24	2	854	2	TMEM198	2	220413975	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	14023	220413975	22785398	632	2656											
OBSL1	23363	broad.mit.edu	37	chr2	220418377	220418377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcggtcacctctaggtcGtgtggcccccgcacgatggt	12	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220418377	T	T	220418377	3	4	4	1	0	0	0	0	1	0	0	0	10908	1136	40	3	806	3	OBSL1	2	220418377	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4402	220418377	22780996	633	2657											
EPHA4	2043	broad.mit.edu	37	chr2	222307544	222307544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaaagggggtgacccaCgtacatttagtgaccacgcc	11	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222307544	A	A	222307544	1	1	4	0	1	0	0	0	0	0	0	0	5211	551	19	3		3	EPHA4	2	222307544	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1889167	222307544	20891829	634	2658											
PAX3	5077	broad.mit.edu	37	chr2	223096856	223096856	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctccctagtataaatgtCagggtaatgagttctctcaa	7	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223096856	A	A	223096856	3	1	4	1	0	0	0	0	1	0	0	0	11574	826	29	3	836	3	PAX3	2	223096856	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	789312	223096856	20102517	635	2659											
SGPP2	130367	broad.mit.edu	37	chr2	223317265	223317265	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggcaggagaatttggctgGaactacatgcaggactgtag	14	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223317265	A	A	223317265	1	1	4	0	1	0	0	0	0	0	0	0	14333	1189	41	4		4	SGPP2	2	223317265	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	220409	223317265	19882108	636	2660											
SERPINE2	5270	broad.mit.edu	37	chr2	224842166	224842166	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actattgacattagggaaatGgactatgggcaccactgttg	11	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224842166	C	C	224842166	1	2	4	0	1	0	0	0	0	0	0	0	14225	1363	47	4		4	SERPINE2	2	224842166	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1524901	224842166	18357207	637	2661											
KIAA1486	57624	broad.mit.edu	37	chr2	226378082	226378082	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttttggtctgctttctttTacagcataggtggagaagta	11	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226378082	C	C	226378082	1	2	4	0	1	0	0	0	0	0	0	0	8307	1769	61	5		5	KIAA1486	2	226378082	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1535916	226378082	16821291	638	2662											
IRS1	3667	broad.mit.edu	37	chr2	227663167	227663167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcggcctcgctgtccgcCgcgatggcaaagtgctcgtc	13	15	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227663167	A	A	227663167	2	1	4	1	0	0	0	0	0	0	0	1	7910	639	23	1		1	IRS1	2	227663167	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1285085	227663167	15536206	639	2663											
COL4A4	1286	broad.mit.edu	37	chr2	227954711	227954711	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgggcagagagaatcacAtaatttttctgactgtcttc	11	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227954711	T	T	227954711	1	4	4	0	1	0	0	0	0	0	0	0	3725	232	8	5		5	COL4A4	2	227954711	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	291544	227954711	15244662	640	2664											
SPHKAP	80309	broad.mit.edu	37	chr2	228883020	228883020	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagaggctctgcattcattCtcactgtgatgagggctttt	11	8	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228883020	A	A	228883020	3	1	4	1	0	0	0	0	1	0	0	0	15166	912	32	3	2576	3	SPHKAP	2	228883020	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	928309	228883020	14316353	641	2665											
SPHKAP	80309	broad.mit.edu	37	chr2	228973593	228973593	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacaaaaccaatttggcaGggcatcctctgattctgcaa	7	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228973593	T	T	228973593	2	4	4	1	0	0	0	0	0	0	0	1	15166	987	35	2		2	SPHKAP	2	228973593	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	90573	228973593	14225780	642	2666											
DNER	92737	broad.mit.edu	37	chr2	230456378	230456378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcaccgttgcctgagagCgaggcaggattttgtcaggc	15	9	2	1	rs141603946		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230456378	A	A	230456378	3	1	4	1	0	0	0	0	1	0	0	0	4707	768	27	3	1758	3	DNER	2	230456378	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1482785	230456378	12742995	643	2667											
TRIP12	9320	broad.mit.edu	37	chr2	230701512	230701512	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttccctccctctgcccatCaaatctgtaaaagacagaaa	4	14	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230701512	A	A	230701512	1	1	4	0	1	0	0	0	0	0	0	0	16681	841	29	3		3	TRIP12	2	230701512	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	245134	230701512	12497861	644	2668											
SP140	11262	broad.mit.edu	37	chr2	231112622	231112622	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctcagagatgccttttttGatccctagttctagaaagca	7	10	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231112622	A	A	231112622	1	1	4	0	1	0	0	0	0	0	0	0	15076	1305	45	4		4	SP140	2	231112622	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	411110	231112622	12086751	645	2669											
SP140L	93349	broad.mit.edu	37	chr2	231193546	231193546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagccaaagtctgcaaaGgtgatgaagaattacaattt	8	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231193546	T	T	231193546	3	4	4	1	0	0	0	0	1	0	0	0	15077	1014	35	2	113	2	SP140L	2	231193546	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	80924	231193546	12005827	646	2670											
ARMC9	80210	broad.mit.edu	37	chr2	232141333	232141333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtttgtatttaccgtaGgctctttcttcccaggcgcc	10	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232141333	T	T	232141333	1	4	4	0	1	0	0	0	0	0	0	0	962	1015	35	2		2	ARMC9	2	232141333	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	947787	232141333	11058040	647	2671											
NMUR1	10316	broad.mit.edu	37	chr2	232390050	232390050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaggccaggtgcaggcCatctgtccactgtgacacga	13	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232390050	A	A	232390050	3	1	4	1	0	0	0	0	1	0	0	0	10601	594	21	2	299	2	NMUR1	2	232390050	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	248717	232390050	10809323	648	2672											
PTMA	5757	broad.mit.edu	37	chr2	232577908	232577908	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcggatgaccaaaccagcCttcggagcgttctctgtcct	9	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232577908	T	T	232577908	1	4	4	0	1	0	0	0	0	0	0	0	12872	696	24	4		4	PTMA	2	232577908	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	187858	232577908	10621465	649	2673											
ALPI	248	broad.mit.edu	37	chr2	233322138	233322138	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagcaggttctggaggtgGagttggggatgtagaatgtg	19	3	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233322138	T	T	233322138	1	4	4	0	1	0	0	0	0	0	0	0	543	1189	41	3		3	ALPI	2	233322138	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	744230	233322138	9877235	650	2674											
NEU2	4759	broad.mit.edu	37	chr2	233898903	233898903	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgccccttgtatgacgcGcagacggggaccctcttcct	10	16	1	2	rs2233387		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233898903	T	T	233898903	2	4	4	1	0	0	0	0	0	0	0	1	10437	1074	38	3		3	NEU2	2	233898903	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	576765	233898903	9300470	651	2675											
TRPM8	79054	broad.mit.edu	37	chr2	234835272	234835272	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtactccagcgcgtctcgGagcacagacttgtcttacag	10	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234835272	T	T	234835272	2	4	4	1	0	0	0	0	0	0	0	1	16717	1161	41	3		3	TRPM8	2	234835272	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	936369	234835272	8364101	652	2676											
TRPM8	79054	broad.mit.edu	37	chr2	234851149	234851149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggggcctttattttagGggtctgtgagcccagaatgg	16	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234851149	T	T	234851149	1	4	4	0	1	0	0	0	0	0	0	0	16717	1247	43	2		2	TRPM8	2	234851149	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	15877	234851149	8348224	653	2677											
TRPM8	79054	broad.mit.edu	37	chr2	234904817	234904817	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcactttcacttcctgctgaGttattttggctcgtgtatca	7	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234904817	C	C	234904817	1	2	4	0	1	0	0	0	0	0	0	0	16717	1044	36	4		4	TRPM8	2	234904817	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	53668	234904817	8294556	654	2678											
SH3BP4	23677	broad.mit.edu	37	chr2	235950023	235950023	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggtacatcctccttcaccGaatccagctcagccaccacg	6	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235950023	T	T	235950023	4	4	4	1	0	0	0	0	0	1	0	0	14359	1059	37	3	616	3	SH3BP4	2	235950023	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1045206	235950023	7249350	655	2679											
AGAP1	116987	broad.mit.edu	37	chr2	236708169	236708169	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggtccaacctgttcaccgtGagtgtcaaccctgggtggag	13	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236708169	T	T	236708169	1	4	4	0	1	0	0	0	0	0	0	0	366	1305	45	3		3	AGAP1	2	236708169	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	758146	236708169	6491204	656	2680											
IQCA1	79781	broad.mit.edu	37	chr2	237406078	237406078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcttctgaggctctttatCgagtaaagcaccgagggctt	10	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237406078	A	A	237406078	3	1	4	1	0	0	0	0	1	0	0	0	7872	884	31	3	2476	3	IQCA1	2	237406078	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	697909	237406078	5793295	657	2681											
COL6A3	1293	broad.mit.edu	37	chr2	238249368	238249368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggtcccgtgggtttgGggcactttcaaagacattct	11	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238249368	T	T	238249368	3	4	4	1	0	0	0	0	1	0	0	0	3733	1232	43	2	1370	2	COL6A3	2	238249368	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	843290	238249368	4950005	658	2682											
COL6A3	1293	broad.mit.edu	37	chr2	238303368	238303368	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catatgcatattgagcggttCacttgctatttcttttaacg	7	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238303368	A	A	238303368	4	1	4	1	0	0	0	0	0	1	0	0	3733	835	29	3	9177	3	COL6A3	2	238303368	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	54000	238303368	4896005	659	2683											
MLPH	79083	broad.mit.edu	37	chr2	238419911	238419911	+	Intron	DEL	T	-	-													gaattcctgcttctggctgcTttttttttttttttttaatt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	238419911	-	-	238419911	6	5	4	0	1	1	0	1	0	0	0	0	9726	1624	56	0		0	MLPH	2	238419911	Intron	DEL	T	TCGA-05-4382-01A-01D-1265-08	116543	238419911	4779462	660	2684											
LRRFIP1	9208	broad.mit.edu	37	chr2	238688153	238688153	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatgaaagcaaatcggaGtgcactcttgtcccagcagt	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238688153	A	A	238688153	3	1	4	1	0	0	0	0	1	0	0	0	9114	1029	36	4	3607	4	LRRFIP1	2	238688153	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	268242	238688153	4511220	661	2685											
HDAC4	9759	broad.mit.edu	37	chr2	240056263	240056263	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcccagcgtgatgttgGgcaaggatggcgatgtgtag	18	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240056263	A	A	240056263	3	1	4	1	0	0	0	0	1	0	0	0	7076	1232	43	4	2271	4	HDAC4	2	240056263	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1368110	240056263	3143110	662	2686											
NDUFA10	4705	broad.mit.edu	37	chr2	240951013	240951013	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagttttagccctgtaaaTcagtcgtgtgtttggctcac	10	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240951013	A	A	240951013	1	1	4	0	1	0	0	0	0	0	0	0	10355	1450	50	5		5	NDUFA10	2	240951013	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	894750	240951013	2248360	663	2687											
ANKMY1	51281	broad.mit.edu	37	chr2	241439815	241439815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaatgccccagccgggggCcctgcacgtgacccacactc	11	18	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241439815	A	A	241439815	1	1	4	0	1	0	0	0	0	0	0	0	634	754	26	3		3	ANKMY1	2	241439815	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	488802	241439815	1759558	664	2688											
AQP12A	375318	broad.mit.edu	37	chr2	241631300	241631300	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcccctcaggtgtcctGcaggcacagctcctcggggg	13	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241631300	T	T	241631300	1	4	4	0	1	0	0	0	0	0	0	0	826	1334	46	3		3	AQP12A	2	241631300	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	191485	241631300	1568073	665	2689											
HDLBP	3069	broad.mit.edu	37	chr2	242195624	242195624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcataaatcttcttgatgCgagccacagcctgagccaac	7	14	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242195624	A	A	242195624	3	1	4	1	0	0	0	0	1	0	0	0	7092	768	27	3	3046	3	HDLBP	2	242195624	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	564324	242195624	1003749	666	2690											
ATG4B	23192	broad.mit.edu	37	chr2	242598667	242598667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacatacacacttcctcGcctgagtccccacgggagcc	9	17	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242598667	T	T	242598667	1	4	4	0	1	0	0	0	0	0	0	0	1101	1102	38	3		3	ATG4B	2	242598667	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	403043	242598667	600706	667	2691											
D2HGDH	728294	broad.mit.edu	37	chr2	242707190	242707190	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcgctcctggctgccctgGagccccacgtgtacgagtgg	13	16	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242707190	T	T	242707190	4	4	4	1	0	0	0	0	0	1	0	0	4246	1175	41	3	1406	3	D2HGDH	2	242707190	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	108523	242707190	492183	668	2692											
CHL1	10752	broad.mit.edu	37	chr3	402157	402157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctattttcctaaggaaagtGgtcaaggtcatgttcagaag	11	6	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	402157	T	T	402157	1	4	4	0	1	0	0	0	0	0	0	0	3380	1363	47	2		2	CHL1	3	402157	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08		402157	197620273	669	2693											
CHL1	10752	broad.mit.edu	37	chr3	439902	439902	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatgatttaactgtgtacaTttcttaggtaaaggtatcgg	9	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	439902	A	A	439902	1	1	4	0	1	0	0	0	0	0	0	0	3380	1508	52	5		5	CHL1	3	439902	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	37745	439902	197582528	670	2694											
CNTN4	152330	broad.mit.edu	37	chr3	3083931	3083931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttaccttataatgctaGtatctacaatcctgtcctaa	3	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3083931	T	T	3083931	1	4	4	0	1	0	0	0	0	0	0	0	3675	1044	36	3		3	CNTN4	3	3083931	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2644029	3083931	194938499	671	2695											
IL5RA	3568	broad.mit.edu	37	chr3	3118364	3118364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagtccaagttagaagcaGcaggtaaaagaaatgatgag	11	4	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3118364	T	T	3118364	1	4	4	0	1	0	0	0	0	0	0	0	7770	986	34	3		3	IL5RA	3	3118364	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	34433	3118364	194904066	672	2696											
GRM7	2917	broad.mit.edu	37	chr3	7456833	7456833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcaaaaaaagaagacaCagatcgcaaatgcacaggta	10	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7456833	A	A	7456833	3	1	4	1	0	0	0	0	1	0	0	0	6868	478	17	3	1175	3	GRM7	3	7456833	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4338469	7456833	190565597	673	2697											
C3orf32	51066	broad.mit.edu	37	chr3	8671512	8671512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtggagtggatcaggacCaggataggaagatggcacag	17	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8671512	A	A	8671512	1	1	4	0	1	0	0	0	0	0	0	0	2244	609	21	2		2	C3orf32	3	8671512	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1214679	8671512	189350918	674	2698											
ATP2B2	491	broad.mit.edu	37	chr3	10391822	10391822	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggtatgcttgtccgttGgggaggagcgagccagcacc	16	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10391822	A	A	10391822	3	1	4	1	0	0	0	0	1	0	0	0	1144	1348	47	4	1385	4	ATP2B2	3	10391822	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1720310	10391822	187630608	675	2699											
TSEN2	80746	broad.mit.edu	37	chr3	12545147	12545147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgctctcatcctccagcGtggccttcatcatgaagacg	9	13	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12545147	T	T	12545147	3	4	4	1	0	0	0	0	1	0	0	0	16737	1159	40	3	709	3	TSEN2	3	12545147	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2153325	12545147	185477283	676	2700											
IQSEC1	9922	broad.mit.edu	37	chr3	12944234	12944234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggactggggaaggcgaCacaggacagccagctggaca	16	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12944234	A	A	12944234	1	1	4	0	1	0	0	0	0	0	0	0	7887	493	17	3		3	IQSEC1	3	12944234	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	399087	12944234	185078196	677	2701											
WNT7A	7476	broad.mit.edu	37	chr3	13896298	13896298	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaacgcagcctcccggcTccctgcgaggaggagagaag	16	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13896298	A	A	13896298	3	1	4	1	0	0	0	0	1	0	0	0	17521	1551	54	5	756	5	WNT7A	3	13896298	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	952064	13896298	184126132	678	2702											
GRIP2	80852	broad.mit.edu	37	chr3	14547155	14547155	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaatcatcctcctcctcCtcctctggaaagctctcgtc	4	19	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14547155	T	T	14547155	2	4	4	1	0	0	0	0	0	0	0	1	6854	680	24	4		4	GRIP2	3	14547155	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	650857	14547155	183475275	679	2703											
TBC1D5	9779	broad.mit.edu	37	chr3	17447954	17447954	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcttctcagctgcccatTaatccccttctgccttattg	6	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17447954	A	A	17447954	3	1	4	1	0	0	0	0	1	0	0	0	15745	1754	61	5	2297	5	TBC1D5	3	17447954	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2900799	17447954	180574476	680	2704											
LRRC3B	116135	broad.mit.edu	37	chr3	26751994	26751994	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtagtttgcgattgcaGtagaaataagtggtttactt	11	3	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26751994	T	T	26751994	1	4	4	0	1	0	0	0	0	0	0	0	9083	1044	36	3		3	LRRC3B	3	26751994	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	9304040	26751994	171270436	681	2705											
NEK10	152110	broad.mit.edu	37	chr3	27233852	27233852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtattttcacctaagataaCctgggataagatggatatca	9	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27233852	A	A	27233852	1	1	4	0	1	0	0	0	0	0	0	0	10417	522	18	3		3	NEK10	3	27233852	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	481858	27233852	170788578	682	2706											
PDCD6IP	10015	broad.mit.edu	37	chr3	33866569	33866569	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgcataatataaaaatttAaatatattaactgttcactg	3	4	1	0	rs58066707	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33866569	T	T	33866569	1	4	4	0	1	0	0	0	0	0	0	0	11718	377	13	5		5	PDCD6IP	3	33866569	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	6632717	33866569	164155861	683	2707											
ARPP21	10777	broad.mit.edu	37	chr3	35723372	35723372	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagaaactggaactgcaGgtgagtgagcatgaagagac	16	5	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35723372	A	A	35723372	2	1	4	1	0	0	0	0	0	0	0	1	982	1014	35	4		4	ARPP21	3	35723372	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1856803	35723372	162299058	684	2708											
ARPP21	10777	broad.mit.edu	37	chr3	35724522	35724522	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctgtactggtgctggctGtttttgatggggttatgttt	15	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35724522	A	A	35724522	1	1	4	0	1	0	0	0	0	0	0	0	982	1392	48	4		4	ARPP21	3	35724522	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1150	35724522	162297908	685	2709											
ARPP21	10777	broad.mit.edu	37	chr3	35731613	35731613	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatggagcaggaaattattGatttcattgctgacaacaag	9	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35731613	T	T	35731613	3	4	4	1	0	0	0	0	1	0	0	0	982	1290	45	3	561	3	ARPP21	3	35731613	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7091	35731613	162290817	686	2710											
DCLK3	85443	broad.mit.edu	37	chr3	36779327	36779327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgctctctcaggagcCagccaccatgtttgctcctg	10	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779327	A	A	36779327	3	1	4	1	0	0	0	0	1	0	0	0	4326	595	21	2	1138	2	DCLK3	3	36779327	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1047714	36779327	161243103	687	2711											
GOLGA4	2803	broad.mit.edu	37	chr3	37402901	37402901	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcttgtttaataaatatatGattatgctatgggttaatat	6	3	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37402901	T	T	37402901	1	4	4	0	1	0	0	0	0	0	0	0	6619	1305	45	3		3	GOLGA4	3	37402901	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	623574	37402901	160619529	688	2712											
ACVR2B	93	broad.mit.edu	37	chr3	38519453	38519453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttgccagaggctggggGcccggaaggtaagggggcag	19	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38519453	T	T	38519453	3	4	4	1	0	0	0	0	1	0	0	0	224	1203	42	3	372	3	ACVR2B	3	38519453	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1116552	38519453	159502977	689	2713											
SCN5A	6331	broad.mit.edu	37	chr3	38627390	38627390	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgagtagttcttgccaaagAgctgcatgcccaccacagca	9	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38627390	G	G	38627390	3	3	4	1	0	0	0	0	1	0	0	0	14035	304	11	5	3523	5	SCN5A	3	38627390	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	107937	38627390	159395040	690	2714											
SCN10A	6336	broad.mit.edu	37	chr3	38781225	38781225	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagtgggatctgtggggtcGgaggcaatgataaaaatggc	16	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38781225	C	C	38781225	1	2	4	0	1	0	0	0	0	0	0	0	14025	1131	39	4		4	SCN10A	3	38781225	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	153835	38781225	159241205	691	2715											
XIRP1	165904	broad.mit.edu	37	chr3	39228545	39228545	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggcaagacagagctcccCtggccctcgggcctccatga	11	16	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39228545	T	T	39228545	3	4	4	1	0	0	0	0	1	0	0	0	17556	681	24	4	3143	4	XIRP1	3	39228545	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	447320	39228545	158793885	692	2716											
ZNF502	91392	broad.mit.edu	37	chr3	44751714	44751714	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgggctaaatctgagccaGcaggaaaagggcatttctca	11	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44751714	A	A	44751714	1	1	4	0	1	0	0	0	0	0	0	0	18077	986	34	4		4	ZNF502	3	44751714	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	5523169	44751714	153270716	693	2717											
KIF15	56992	broad.mit.edu	37	chr3	44819546	44819546	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgttacattgtagaatGcaatttaggaaaaatgtttt	8	3	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44819546	C	C	44819546	1	2	4	0	1	0	0	0	0	0	0	0	8347	1334	46	4		4	KIF15	3	44819546	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	67832	44819546	153202884	694	2718											
KIF15	56992	broad.mit.edu	37	chr3	44869649	44869649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaacttgtttatctgtgtGtatggttaactttgcgattt	8	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44869649	A	A	44869649	1	1	4	0	1	0	0	0	0	0	0	0	8347	1392	48	4		4	KIF15	3	44869649	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	50103	44869649	153152781	695	2719											
TGM4	7047	broad.mit.edu	37	chr3	44943247	44943247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagggagggactcccagccCccacagttgccaaccacccc	9	19	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44943247	A	A	44943247	1	1	4	0	1	0	0	0	0	0	0	0	15955	638	22	2		2	TGM4	3	44943247	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	73598	44943247	153079183	696	2720											
LARS2	23395	broad.mit.edu	37	chr3	45500217	45500217	+	Intron	DEL	G	-	-													tcaccagattgtgccattttGtttcatgaattatacaggcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45500217	-	-	45500217	6	5	4	0	1	1	0	1	0	0	0	0	8707	1392	48	0		0	LARS2	3	45500217	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	556970	45500217	152522213	697	2721											
LIMD1	8994	broad.mit.edu	37	chr3	45637310	45637310	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcaaggaggtcttccaagAtcaaactcggggctgggggg	17	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45637310	T	T	45637310	3	4	4	1	0	0	0	0	1	0	0	0	8870	330	12	5	941	5	LIMD1	3	45637310	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	137093	45637310	152385120	698	2722											
LIMD1	8994	broad.mit.edu	37	chr3	45707201	45707201	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaagtgttttgtgaagaaGacttcctggtgagtgtgtca	13	5	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45707201	A	A	45707201	3	1	4	1	0	0	0	0	1	0	0	0	8870	942	33	4	1580	4	LIMD1	3	45707201	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	69891	45707201	152315229	699	2723											
SACM1L	22908	broad.mit.edu	37	chr3	45781032	45781032	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaactgattttgctgccaTtgattagcattcttaaatga	6	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45781032	C	C	45781032	1	2	4	0	1	0	0	0	0	0	0	0	13914	1508	52	5		5	SACM1L	3	45781032	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	73831	45781032	152241398	700	2724											
XCR1	2829	broad.mit.edu	37	chr3	46062476	46062476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcataggcgaaggcaccagGggagtgggggatcgaggctg	19	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46062476	T	T	46062476	3	4	4	1	0	0	0	0	1	0	0	0	17552	1232	43	2	41	2	XCR1	3	46062476	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	281444	46062476	151959954	701	2725											
PRSS45	377047	broad.mit.edu	37	chr3	46784392	46784392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagctaccagaacctccCagaaactcacatagcacaag	7	14	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46784392	A	A	46784392	1	1	4	0	1	0	0	0	0	0	0	0	12735	609	21	2		2	PRSS45	3	46784392	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	721916	46784392	151238038	702	2726											
C3orf75	54859	broad.mit.edu	37	chr3	47543343	47543343	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcccagcattagcctcccTggagagacaggacaaaagtt	10	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47543343	A	A	47543343	5	1	4	1	0	0	0	0	0	0	1	0	2267	1594	55	5	490	5	C3orf75	3	47543343	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	758951	47543343	150479087	703	2727											
SMARCC1	6599	broad.mit.edu	37	chr3	47721866	47721866	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaggaactcaggtggatGcttgaagagcccctaccgca	11	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47721866	A	A	47721866	1	1	4	0	1	0	0	0	0	0	0	0	14889	1334	46	4		4	SMARCC1	3	47721866	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	178523	47721866	150300564	704	2728											
FBXW12	285231	broad.mit.edu	37	chr3	48423159	48423159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacttccttatgtgtgtgtGtatatatatgtgcgttttac	8	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48423159	A	A	48423159	1	1	4	0	1	0	0	0	0	0	0	0	5822	1392	48	4		4	FBXW12	3	48423159	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	701293	48423159	149599271	705	2729											
COL7A1	1294	broad.mit.edu	37	chr3	48606802	48606802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtacaccaccctcttccCtgtaccttgtcaccagggtc	7	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48606802	A	A	48606802	1	1	4	0	1	0	0	0	0	0	0	0	3736	696	24	2		2	COL7A1	3	48606802	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	183643	48606802	149415628	706	2730											
COL7A1	1294	broad.mit.edu	37	chr3	48629273	48629273	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcctgcaagataacagggtCagaccagcagaggccatgcc	12	12	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48629273	A	A	48629273	1	1	4	0	1	0	0	0	0	0	0	0	3736	841	29	3		3	COL7A1	3	48629273	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	22471	48629273	149393157	707	2731											
CELSR3	1951	broad.mit.edu	37	chr3	48677941	48677941	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccaggacagctcagggGcacctcgggtctgtggcacc	15	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48677941	A	A	48677941	3	1	4	1	0	0	0	0	1	0	0	0	3253	1203	42	4	869	4	CELSR3	3	48677941	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	48668	48677941	149344489	708	2732											
NCKIPSD	51517	broad.mit.edu	37	chr3	48716972	48716972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaacaccctccagatagCaggaagttccctcctacccc	7	17	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48716972	T	T	48716972	1	4	4	0	1	0	0	0	0	0	0	0	10320	725	25	4		4	NCKIPSD	3	48716972	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	39031	48716972	149305458	709	2733											
WDR6	11180	broad.mit.edu	37	chr3	49049550	49049550	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acccagcaactgccttagcaGacaacaaacctgtagcacct	6	15	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49049550	C	C	49049550	3	2	4	1	0	0	0	0	1	0	0	0	17437	942	33	4	679	4	WDR6	3	49049550	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	332578	49049550	148972880	710	2734											
MST1	4485	broad.mit.edu	37	chr3	49725033	49725033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagaacgccgcagcctcGtgtggggcgagtgttgagtc	16	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49725033	T	T	49725033	3	4	4	1	0	0	0	0	1	0	0	0	9984	1145	40	3	1930	3	MST1	3	49725033	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	675483	49725033	148297397	711	2735											
RNF123	63891	broad.mit.edu	37	chr3	49738207	49738207	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggactcagcagaggccagGaaggggagtgtcatcaggcc	16	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49738207	C	C	49738207	1	2	4	0	1	0	0	0	0	0	0	0	13544	1189	41	4		4	RNF123	3	49738207	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	13174	49738207	148284223	712	2736											
CDHR4	389118	broad.mit.edu	37	chr3	49836286	49836286	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtggagttctaggcctggGaggagcagagtgtacagccg	17	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49836286	T	T	49836286	2	4	4	1	0	0	0	0	0	0	0	1	3151	1161	41	3		3	CDHR4	3	49836286	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	98079	49836286	148186144	713	2737											
MAPKAPK3	7867	broad.mit.edu	37	chr3	50685560	50685560	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggccaggagggcccagGgtcattcttttaacaaaagg	12	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50685560	T	T	50685560	1	4	4	0	1	0	0	0	0	0	0	0	9382	1247	43	2		2	MAPKAPK3	3	50685560	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	849274	50685560	147336870	714	2738											
PCBP4	57060	broad.mit.edu	37	chr3	51994299	51994299	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagggtcactggaggcctgGagacatttccaccatttgca	12	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51994299	C	C	51994299	3	2	4	1	0	0	0	0	1	0	0	0	11597	1174	41	4	950	4	PCBP4	3	51994299	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1308739	51994299	146028131	715	2739											
PBRM1	55193	broad.mit.edu	37	chr3	52643680	52643680	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatcaaagactccggctcaTtgtatgtacaggcattatta	8	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52643680	C	C	52643680	3	2	4	1	0	0	0	0	1	0	0	0	11585	1493	52	5	2744	5	PBRM1	3	52643680	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	649381	52643680	145378750	716	2740											
NEK4	6787	broad.mit.edu	37	chr3	52787573	52787573	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggagcatgtctacaagctCtacatggaaacgatctgaag	10	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52787573	A	A	52787573	1	1	4	0	1	0	0	0	0	0	0	0	10421	928	32	3		3	NEK4	3	52787573	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	143893	52787573	145234857	717	2741											
ITIH1	3697	broad.mit.edu	37	chr3	52816058	52816058	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtgacctacgatgtcagtCgagacaagatctgcgacctc	11	11	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52816058	A	A	52816058	2	1	4	1	0	0	0	0	0	0	0	1	7973	876	31	3		3	ITIH1	3	52816058	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	28485	52816058	145206372	718	2742											
RFT1	91869	broad.mit.edu	37	chr3	53137994	53137994	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgagctaagcatggtcccTccgtagatatccagagccag	10	13	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53137994	A	A	53137994	2	1	4	1	0	0	0	0	0	0	0	1	13365	1538	54	5		5	RFT1	3	53137994	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	321936	53137994	144884436	719	2743											
CACNA1D	776	broad.mit.edu	37	chr3	53756216	53756216	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccatttgtgctcatctttCtttcctgcactcccacccca	4	17	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53756216	G	G	53756216	1	3	4	0	1	0	0	0	0	0	0	0	2567	928	32	4		4	CACNA1D	3	53756216	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	618222	53756216	144266214	720	2744											
CACNA1D	776	broad.mit.edu	37	chr3	53804326	53804327	+	Intron	INS	-	A	A													atatcatgctttttaagatgINSaaaaggccctagaatcacat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53804327	A	A	53804326	6	5	4	0	1	1	1	0	0	0	0	0	2567	1305	45	0		0	CACNA1D	3	53804326	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	48110	53804326	144218104	721	2745											
CACNA1D	776	broad.mit.edu	37	chr3	53834231	53834231	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacccaggctggccccagGgcccatgtgtggtctaacct	13	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53834231	T	T	53834231	1	4	4	0	1	0	0	0	0	0	0	0	2567	1247	43	2		2	CACNA1D	3	53834231	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	29905	53834231	144188199	722	2746											
IL17RB	55540	broad.mit.edu	37	chr3	53883601	53883601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaatgggggaaggtttgGtgtgagtcactgagaggaga	19	2	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53883601	T	T	53883601	1	4	4	0	1	0	0	0	0	0	0	0	7710	1276	44	3		3	IL17RB	3	53883601	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	49370	53883601	144138829	723	2747											
ARHGEF3	50650	broad.mit.edu	37	chr3	56779328	56779328	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttaccaggcggcttcttgGaatatcgaggaaattccaga	10	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56779328	A	A	56779328	3	1	4	1	0	0	0	0	1	0	0	0	906	1174	41	4	821	4	ARHGEF3	3	56779328	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2895727	56779328	141243102	724	2748											
ARHGEF3	50650	broad.mit.edu	37	chr3	56785317	56785317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacgactcatcctgggaaCaaaattataccttcatgtag	7	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56785317	A	A	56785317	1	1	4	0	1	0	0	0	0	0	0	0	906	493	17	3		3	ARHGEF3	3	56785317	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5989	56785317	141237113	725	2749											
APPL1	26060	broad.mit.edu	37	chr3	57271997	57271997	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttttctgaagttatttaaAaatgtaaattatagtaatgt	6	1	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57271997	T	T	57271997	1	4	4	0	1	0	0	0	0	0	0	0	819	29	1	5		5	APPL1	3	57271997	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	486680	57271997	140750433	726	2750											
DNAH12	201625	broad.mit.edu	37	chr3	57505353	57505353	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacttgataacaagatccaCcaaggctctgaacaactgca	7	12	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57505353	G	G	57505353	1	3	4	0	1	0	0	0	0	0	0	0	4640	522	18	4		4	DNAH12	3	57505353	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	233356	57505353	140517077	727	2751											
FLNB	2317	broad.mit.edu	37	chr3	58062737	58062737	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataatttacacttgtgtaacCcaaaggaatgaccaagcctg	7	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58062737	T	T	58062737	1	4	4	0	1	0	0	0	0	0	0	0	5992	638	22	4		4	FLNB	3	58062737	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	557384	58062737	139959693	728	2752											
CADPS	8618	broad.mit.edu	37	chr3	62485004	62485004	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggctacttttatggccatTagaactagtggataagaaat	9	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62485004	C	C	62485004	1	2	4	0	1	0	0	0	0	0	0	0	2596	1769	61	5		5	CADPS	3	62485004	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4422267	62485004	135537426	729	2753											
CADPS	8618	broad.mit.edu	37	chr3	62751548	62751548	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaacagtgattctcacctCatagtaactctgcacagcgt	7	12	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62751548	A	A	62751548	4	1	4	1	0	0	0	0	0	1	0	0	2596	835	29	3	3697	3	CADPS	3	62751548	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	266544	62751548	135270882	730	2754											
PSMD6	9861	broad.mit.edu	37	chr3	64004980	64004980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagaaagtaccttttggcCttttctgtgtttcgtgtgat	9	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64004980	A	A	64004980	3	1	4	1	0	0	0	0	1	0	0	0	12808	680	24	2	704	2	PSMD6	3	64004980	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1253432	64004980	134017450	731	2755											
ADAMTS9	56999	broad.mit.edu	37	chr3	64526878	64526878	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcgcgccggctcccgttaTagggacattctgttgggttg	13	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64526878	C	C	64526878	3	2	4	1	0	0	0	0	1	0	0	0	273	1406	49	5	409	5	ADAMTS9	3	64526878	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	521898	64526878	133495552	732	2756											
ADAMTS9	56999	broad.mit.edu	37	chr3	64601143	64601143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctcctctgggtcccacCgtcacagctttttgaacact	6	16	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64601143	A	A	64601143	3	1	4	1	0	0	0	0	1	0	0	0	273	652	23	1	2840	1	ADAMTS9	3	64601143	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	74265	64601143	133421287	733	2757											
FOXP1	27086	broad.mit.edu	37	chr3	71008619	71008619	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcactgaaaagtttggggCaacagaaaagccgcactcta	11	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71008619	A	A	71008619	1	1	4	0	1	0	0	0	0	0	0	0	6086	725	25	3		3	FOXP1	3	71008619	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	6407476	71008619	127013811	734	2758											
ROBO2	6092	broad.mit.edu	37	chr3	77645928	77645928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttttttaaaatagtgtTatttgagttctctctctctt	6	5	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77645928	A	A	77645928	1	1	4	0	1	0	0	0	0	0	0	0	13625	1769	61	5		5	ROBO2	3	77645928	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	6637309	77645928	120376502	735	2759											
ROBO1	6091	broad.mit.edu	37	chr3	78683300	78683300	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actaaagaaacaaattggacCatttatttgccttttttctc	4	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78683300	G	G	78683300	1	3	4	0	1	0	0	0	0	0	0	0	13624	609	21	4		4	ROBO1	3	78683300	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1037372	78683300	119339130	736	2760											
CADM2	253559	broad.mit.edu	37	chr3	86063476	86063476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttttacaagagcctttgGggaaaatctccaggggcaaa	10	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86063476	T	T	86063476	1	4	4	0	1	0	0	0	0	0	0	0	2593	1247	43	2		2	CADM2	3	86063476	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	7380176	86063476	111958954	737	2761											
POU1F1	5449	broad.mit.edu	37	chr3	87322487	87322487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caataacatgtaaaagacaaCttttcttacctgccatcact	3	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87322487	A	A	87322487	1	1	4	0	1	0	0	0	0	0	0	0	12365	580	20	3		3	POU1F1	3	87322487	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1259011	87322487	110699943	738	2762											
PROS1	5627	broad.mit.edu	37	chr3	93615551	93615551	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaacctggaataaaagaaaCcaaataaacaacaagaaaat	4	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93615551	T	T	93615551	1	4	4	0	1	0	0	0	0	0	0	0	12664	522	18	4		4	PROS1	3	93615551	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	6293064	93615551	104406879	739	2763											
PROS1	5627	broad.mit.edu	37	chr3	93617218	93617218	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtattttcctgacttagCtatgtgaaaataagtatcta	6	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93617218	T	T	93617218	1	4	4	0	1	0	0	0	0	0	0	0	12664	812	28	4		4	PROS1	3	93617218	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1667	93617218	104405212	740	2764											
EPHA6	285220	broad.mit.edu	37	chr3	97167557	97167557	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacagtcagaaatttgaatTtgaaacaggagatgaaagta	9	4	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97167557	A	A	97167557	3	1	4	1	0	0	0	0	1	0	0	0	5213	1841	64	5	1903	5	EPHA6	3	97167557	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	3550339	97167557	100854873	741	2765											
OR5H15	403274	broad.mit.edu	37	chr3	97887789	97887789	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagtgaccccaaagatgctGaataacttcttagctaagag	8	9	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97887789	A	A	97887789	2	1	4	1	0	0	0	0	0	0	0	1	11255	1277	45	4		4	OR5H15	3	97887789	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	720232	97887789	100134641	742	2766											
OR5H6	79295	broad.mit.edu	37	chr3	97984066	97984066	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcctgagaaacaagcaagTaatagcttcattcacaaaaa	6	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97984066	C	C	97984066	3	2	4	1	0	0	0	0	1	0	0	0	11257	1638	57	5	940	5	OR5H6	3	97984066	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	96277	97984066	100038364	743	2767											
DCBLD2	131566	broad.mit.edu	37	chr3	98530083	98530083	+	Frame_Shift_Del	DEL	T	-	-													agtatttctgatatcaggacTggcagttgtttgttctgtct							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98530083	-	-	98530083	7	5	4	1	0	1	0	1	0	0	0	0	4314	1580	55	0	816	0	DCBLD2	3	98530083	Frame_Shift_Del	DEL	T	TCGA-05-4382-01A-01D-1265-08	546017	98530083	99492347	744	2768											
DPPA2	151871	broad.mit.edu	37	chr3	109027977	109027977	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttgacaaagactcccatAattattcccagcagcagata	6	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109027977	T	T	109027977	1	4	4	0	1	0	0	0	0	0	0	0	4774	377	13	5		5	DPPA2	3	109027977	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	10497894	109027977	88994453	745	2769											
ZBED2	79413	broad.mit.edu	37	chr3	111312388	111312388	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatagattctccaagccCaatttaaacaaaatggaagg	7	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111312388	A	A	111312388	1	1	4	0	1	0	0	0	0	0	0	0	17645	609	21	2		2	ZBED2	3	111312388	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	2284411	111312388	86710042	746	2770											
TMPRSS7	344805	broad.mit.edu	37	chr3	111780676	111780676	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagacaatttttcgagtGcccagccctctggttcacat	7	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111780676	T	T	111780676	2	4	4	1	0	0	0	0	0	0	0	1	16375	1306	46	3		3	TMPRSS7	3	111780676	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	468288	111780676	86241754	747	2771											
CD200R1	131450	broad.mit.edu	37	chr3	112643989	112643989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatggtcaaaataataataGtaaggatgatatatggaata	9	2	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112643989	T	T	112643989	3	4	4	1	0	0	0	0	1	0	0	0	3011	1029	36	3	237	3	CD200R1	3	112643989	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	863313	112643989	85378441	748	2772											
BOC	91653	broad.mit.edu	37	chr3	112989611	112989612	+	Intron	DNP	CC	AA	AA													gcagagtgaagtattctggaCccatcccatcttcccctggc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	112989612	AA	AA	112989611	1	1	4	0	1	0	0	0	0	0	0	0	1487	522	18	3		3	BOC	3	112989611	Intron	DNP	CC	TCGA-05-4382-01A-01D-1265-08	345622	112989611	85032819	749	2773											
BOC	91653	broad.mit.edu	37	chr3	112989746	112989746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctacaacccagtgaccCaggaagtgaaaacctccggc	9	15	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112989746	A	A	112989746	3	1	4	1	0	0	0	0	1	0	0	0	1487	595	21	2	636	2	BOC	3	112989746	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	135	112989746	85032684	750	2774											
BOC	91653	broad.mit.edu	37	chr3	112991432	112991432	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaagacgcgcttcctgctGagcaacctcctcatcgacac	7	16	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112991432	A	A	112991432	2	1	4	1	0	0	0	0	0	0	0	1	1487	1277	45	4		4	BOC	3	112991432	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1686	112991432	85030998	751	2775											
GAP43	2596	broad.mit.edu	37	chr3	115342539	115342539	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaagggacgagacaaccatGctgtgctgtatgagaagaac	13	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115342539	C	C	115342539	3	2	4	1	0	0	0	0	1	0	0	0	6297	1319	46	4	5	4	GAP43	3	115342539	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2351107	115342539	82679891	752	2776											
GAP43	2596	broad.mit.edu	37	chr3	115439562	115439562	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acataaaaagaagaaatgcaTtgcactgttgtatgagcaga	9	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115439562	C	C	115439562	1	2	4	0	1	0	0	0	0	0	0	0	6297	1508	52	5		5	GAP43	3	115439562	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	97023	115439562	82582868	753	2777											
IGSF11	152404	broad.mit.edu	37	chr3	118648857	118648857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacgcacattgacaatgcCaccttattctcgaaaccaaa	4	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118648857	A	A	118648857	1	1	4	0	1	0	0	0	0	0	0	0	7668	609	21	2		2	IGSF11	3	118648857	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3209295	118648857	79373573	754	2778											
C3orf30	152405	broad.mit.edu	37	chr3	118865608	118865608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagtctgagagaagagcttCcgagcagatggaccgcagaa	13	10	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118865608	A	A	118865608	3	1	4	1	0	0	0	0	1	0	0	0	2242	855	30	3	574	3	C3orf30	3	118865608	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	216751	118865608	79156822	755	2779											
GSK3B	2932	broad.mit.edu	37	chr3	119635056	119635056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaattaattaaatacttcCtattctaaacaaatcagaat	2	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119635056	A	A	119635056	1	1	4	0	1	0	0	0	0	0	0	0	6890	696	24	2		2	GSK3B	3	119635056	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	769448	119635056	78387374	756	2780											
HCLS1	3059	broad.mit.edu	37	chr3	121376322	121376322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttcagtctgggtcttTattcacatcccctctatatt	4	13	6	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121376322	A	A	121376322	1	1	4	0	1	0	0	0	0	0	0	0	7061	1769	61	5		5	HCLS1	3	121376322	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1741266	121376322	76646108	757	2781											
CASR	846	broad.mit.edu	37	chr3	121981263	121981263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttgaggcgtggcaggtgCgtccttcacttatatagcaa	12	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121981263	A	A	121981263	1	1	4	0	1	0	0	0	0	0	0	0	2708	783	27	3		3	CASR	3	121981263	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	604941	121981263	76041167	758	2782											
PARP15	165631	broad.mit.edu	37	chr3	122340333	122340333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataattacaccaggtggatGcttaaagtgcaaaataataa	7	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122340333	T	T	122340333	3	4	4	1	0	0	0	0	1	0	0	0	11553	1319	46	3	1205	3	PARP15	3	122340333	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	359070	122340333	75682097	759	2783											
PARP15	165631	broad.mit.edu	37	chr3	122353848	122353848	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtcctttctgaaatatttTgtcttttgttacctgcagat	7	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122353848	A	A	122353848	1	1	4	0	1	0	0	0	0	0	0	0	11553	1827	63	5		5	PARP15	3	122353848	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	13515	122353848	75668582	760	2784											
SEMA5B	54437	broad.mit.edu	37	chr3	122645184	122645184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcccaccaggccatgaGgccaggccagctcctgacat	11	15	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122645184	T	T	122645184	1	4	4	0	1	0	0	0	0	0	0	0	14151	1015	35	2		2	SEMA5B	3	122645184	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	291336	122645184	75377246	761	2785											
ADCY5	111	broad.mit.edu	37	chr3	123021810	123021810	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagtgagctggtgagacccTgtccttcagactgtcctgag	12	11	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123021810	A	A	123021810	1	1	4	0	1	0	0	0	0	0	0	0	297	1595	55	5		5	ADCY5	3	123021810	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	376626	123021810	75000620	762	2786											
MYLK	4638	broad.mit.edu	37	chr3	123452994	123452994	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctccagactgtccagcttCgactcctttgagattacatt	7	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123452994	A	A	123452994	2	1	4	1	0	0	0	0	0	0	0	1	10150	871	31	3		3	MYLK	3	123452994	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	431184	123452994	74569436	763	2787											
MYLK	4638	broad.mit.edu	37	chr3	123456333	123456333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatggatttccagaacctGcatgccgttcttctcagaca	7	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123456333	T	T	123456333	3	4	4	1	0	0	0	0	1	0	0	0	10150	1328	46	3	5206	3	MYLK	3	123456333	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3339	123456333	74566097	764	2788											
KALRN	8997	broad.mit.edu	37	chr3	124237357	124237357	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccgggttagccgtggcAccgttgggacctcccaccag	12	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124237357	T	T	124237357	1	4	4	0	1	0	0	0	0	0	0	0	8045	174	6	5		5	KALRN	3	124237357	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	781024	124237357	73785073	765	2789											
ITGB5	3693	broad.mit.edu	37	chr3	124492670	124492670	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctggccatctctgccccGgcatgtgctgatgtctgtcg	12	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124492670	A	A	124492670	3	1	4	1	0	0	0	0	1	0	0	0	7968	1115	39	4	636	4	ITGB5	3	124492670	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	255313	124492670	73529760	766	2790											
ITGB5	3693	broad.mit.edu	37	chr3	124528086	124528086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggttttctgaggcccaCgtggcttcctctaactcagg	10	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124528086	A	A	124528086	1	1	4	0	1	0	0	0	0	0	0	0	7968	551	19	3		3	ITGB5	3	124528086	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	35416	124528086	73494344	767	2791											
SLC12A8	84561	broad.mit.edu	37	chr3	124829095	124829095	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatgcactgcaggatgcGgggagctccataaagtcctc	13	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124829095	A	A	124829095	3	1	4	1	0	0	0	0	1	0	0	0	14502	1116	39	4	1171	4	SLC12A8	3	124829095	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	301009	124829095	73193335	768	2792											
ALDH1L1	10840	broad.mit.edu	37	chr3	125877313	125877313	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatagatgatggagccatgCcggggggcactgattatctc	14	8	1	4	rs113434283		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125877313	A	A	125877313	2	1	4	1	0	0	0	0	0	0	0	1	494	726	26	3		3	ALDH1L1	3	125877313	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1048218	125877313	72145117	769	2793											
UROC1	131669	broad.mit.edu	37	chr3	126222750	126222750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcattaaacaggcccaCaccaagctgccccatggggg	11	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126222750	A	A	126222750	1	1	4	0	1	0	0	0	0	0	0	0	17154	493	17	3		3	UROC1	3	126222750	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	345437	126222750	71799680	770	2794											
PLXNA1	5361	broad.mit.edu	37	chr3	126735383	126735383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcccgtgagatccggtGcctgacaccccccgggcaga	12	16	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126735383	T	T	126735383	3	4	4	1	0	0	0	0	1	0	0	0	12214	1319	46	3	3096	3	PLXNA1	3	126735383	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	512633	126735383	71287047	771	2795											
TPRA1	131601	broad.mit.edu	37	chr3	127294545	127294545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctacagtggcccggtagaCtccctcccatccccgcctgt	8	19	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127294545	A	A	127294545	1	1	4	0	1	0	0	0	0	0	0	0	16541	580	20	3		3	TPRA1	3	127294545	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	559162	127294545	70727885	772	2796											
MCM2	4171	broad.mit.edu	37	chr3	127336223	127336223	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctgcaggctcgctgcacGgtcattgctgccgccaaccc	10	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127336223	C	C	127336223	2	2	4	1	0	0	0	0	0	0	0	1	9479	1103	39	4		4	MCM2	3	127336223	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	41678	127336223	70686207	773	2797											
ACAD9	28976	broad.mit.edu	37	chr3	128598521	128598521	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agactgaggctgaggctgggGaacatcgggcagcatgagcg	18	8	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128598521	C	C	128598521	1	2	4	0	1	0	0	0	0	0	0	0	111	1189	41	4		4	ACAD9	3	128598521	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	1262298	128598521	69423909	774	2798											
CCDC48	79825	broad.mit.edu	37	chr3	128758527	128758527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgagcagactgatcctGccctccctgcctgctgtttc	10	14	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128758527	T	T	128758527	1	4	4	0	1	0	0	0	0	0	0	0	2847	1334	46	3		3	CCDC48	3	128758527	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	160006	128758527	69263903	775	2799											
RAB43	339122	broad.mit.edu	37	chr3	128813856	128813857	+	Missense_Mutation	DNP	CC	AA	AA													cagctgcacaatgttggagcCcgcatacttcctcacatcct							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	128813857	AA	AA	128813856	3	1	4	1	0	0	0	0	1	0	0	0	13053	623	22	2	285	2	RAB43	3	128813856	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	55329	128813856	69208574	776	2800											
COL6A6	131873	broad.mit.edu	37	chr3	130282042	130282042	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagaggccgacaaataccgTgtggccctggcccagtacag	12	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130282042	C	C	130282042	2	2	4	1	0	0	0	0	0	0	0	1	3735	1683	59	5		5	COL6A6	3	130282042	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	1468186	130282042	67740388	777	2801											
COL6A6	131873	broad.mit.edu	37	chr3	130289604	130289604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttataaaaaggttgaggcGtctcccatgctgtccaaagc	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130289604	T	T	130289604	1	4	4	0	1	0	0	0	0	0	0	0	3735	1160	40	3		3	COL6A6	3	130289604	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	7562	130289604	67732826	778	2802											
DNAJC13	23317	broad.mit.edu	37	chr3	132219600	132219600	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataaggaatgcctatgtgActctactggtttttttgctc	8	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132219600	G	G	132219600	1	3	4	0	1	0	0	0	0	0	0	0	4672	290	10	5		5	DNAJC13	3	132219600	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1929996	132219600	65802830	779	2803											
DNAJC13	23317	broad.mit.edu	37	chr3	132235541	132235541	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcactaattatctttttccTtcataggtgctttgatctat	5	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132235541	A	A	132235541	1	1	4	0	1	0	0	0	0	0	0	0	4672	1624	56	5		5	DNAJC13	3	132235541	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	15941	132235541	65786889	780	2804											
ACAD11	84129	broad.mit.edu	37	chr3	132360962	132360962	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtccaggaattgttaaatCacggaagattcgaccctatg	9	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132360962	T	T	132360962	3	4	4	1	0	0	0	0	1	0	0	0	109	826	29	4	2019	4	ACAD11	3	132360962	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	125421	132360962	65661468	781	2805											
SRPRB	58477	broad.mit.edu	37	chr3	133538673	133538673	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttggaaaaaggtctgtggTagtctggagttgatgaggaa	15	2	2	2	rs114364343	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133538673	C	C	133538673	1	2	4	0	1	0	0	0	0	0	0	0	15281	1653	57	5		5	SRPRB	3	133538673	3'UTR	SNP	T	TCGA-05-4382-01A-01D-1265-08	1177711	133538673	64483757	782	2806											
EPHB1	2047	broad.mit.edu	37	chr3	134898592	134898592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaagttgcagcctggtGtgtaggagagctcctcccag	14	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134898592	T	T	134898592	1	4	4	0	1	0	0	0	0	0	0	0	5216	1392	48	3		3	EPHB1	3	134898592	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1359919	134898592	63123838	783	2807											
EPHB1	2047	broad.mit.edu	37	chr3	134898709	134898709	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctccaacaaggctccccAgggatgaagatctacattga	8	13	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134898709	T	T	134898709	2	4	4	1	0	0	0	0	0	0	0	1	5216	175	7	5		5	EPHB1	3	134898709	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	117	134898709	63123721	784	2808											
EPHB1	2047	broad.mit.edu	37	chr3	134920489	134920489	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactttggcctctcccgctaCctccaggatgacacctcaga	8	16	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134920489	G	G	134920489	4	3	4	1	0	0	0	0	0	1	0	0	5216	518	18	4	2350	4	EPHB1	3	134920489	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	21780	134920489	63101941	785	2809											
PRR23A	729627	broad.mit.edu	37	chr3	138724343	138724343	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgtctgcgggccttgcaCggagggcgtttcgggagcgg	19	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138724343	A	A	138724343	2	1	4	1	0	0	0	0	0	0	0	1	12700	523	19	3		3	PRR23A	3	138724343	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	3803854	138724343	59298087	786	2810											
PRR23C	389152	broad.mit.edu	37	chr3	138762812	138762812	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccagaagatggaattcCaggtcgaagatggggcgtgg	17	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138762812	A	A	138762812	2	1	4	1	0	0	0	0	0	0	0	1	12702	581	21	2		2	PRR23C	3	138762812	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	38469	138762812	59259618	787	2811											
CLSTN2	64084	broad.mit.edu	37	chr3	140123634	140123634	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacctcagaggacccctgtGgggtcaggaaaacaaatcca	11	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140123634	A	A	140123634	1	1	4	0	1	0	0	0	0	0	0	0	3594	1363	47	4		4	CLSTN2	3	140123634	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1360822	140123634	57898796	788	2812											
CLSTN2	64084	broad.mit.edu	37	chr3	140284952	140284952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggagaagaggaggaagaaGccgaggaagaaatgagctcc	17	5	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140284952	A	A	140284952	3	1	4	1	0	0	0	0	1	0	0	0	3594	971	34	4	2791	4	CLSTN2	3	140284952	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	161318	140284952	57737478	789	2813											
TRIM42	287015	broad.mit.edu	37	chr3	140397271	140397271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaactgccattggtgttGctgctcttgggccaatgatc	10	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140397271	T	T	140397271	3	4	4	1	0	0	0	0	1	0	0	0	16641	1319	46	3	202	3	TRIM42	3	140397271	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	112319	140397271	57625159	790	2814											
ATP1B3	483	broad.mit.edu	37	chr3	141626186	141626186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaccaaattgtgggccggGcacggtagctcacgcctgta	13	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141626186	T	T	141626186	1	4	4	0	1	0	0	0	0	0	0	0	1138	1218	42	3		3	ATP1B3	3	141626186	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1228915	141626186	56396244	791	2815											
ATR	545	broad.mit.edu	37	chr3	142204130	142204130	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacgcggtcacatcctataAaaaagaacataggataccta	7	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142204130	G	G	142204130	1	3	4	0	1	0	0	0	0	0	0	0	1208	29	1	5		5	ATR	3	142204130	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	577944	142204130	55818300	792	2816											
ZIC1	7545	broad.mit.edu	37	chr3	147131115	147131115	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcactggctctttatgtccGtaaaaacgcgactttattcc	7	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147131115	A	A	147131115	1	1	4	0	1	0	0	0	0	0	0	0	17804	1160	40	4		4	ZIC1	3	147131115	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4926985	147131115	50891315	793	2817											
HLTF	6596	broad.mit.edu	37	chr3	148759310	148759310	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacttggcaaatacagggTttacaaaatacatgtgcaca	8	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148759310	A	A	148759310	3	1	4	1	0	0	0	0	1	0	0	0	7282	1722	60	5	710	5	HLTF	3	148759310	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1628195	148759310	49263120	794	2818											
HLTF	6596	broad.mit.edu	37	chr3	148791089	148791089	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttccagagccccaaccacTttccaaattgaatcctaaag	4	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148791089	A	A	148791089	3	1	4	1	0	0	0	0	1	0	0	0	7282	1609	56	5	2563	5	HLTF	3	148791089	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	31779	148791089	49231341	795	2819											
MED12L	116931	broad.mit.edu	37	chr3	150908500	150908500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgattgaatttgtttctctAtagcggacccaaacagtgaa	8	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150908500	G	G	150908500	1	3	4	0	1	0	0	0	0	0	0	0	9522	464	16	5		5	MED12L	3	150908500	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2117411	150908500	47113930	796	2820											
IGSF10	285313	broad.mit.edu	37	chr3	151163172	151163172	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggttccaattgtgaactTggcatttgggtgaaccttgg	13	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151163172	A	A	151163172	4	1	4	1	0	0	0	0	0	1	0	0	7667	1821	63	5	3334	5	IGSF10	3	151163172	Nonsense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	254672	151163172	46859258	797	2821											
GMPS	8833	broad.mit.edu	37	chr3	155628452	155628452	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcagcatgaaaaaatTttaatttgtgactattttct	4	5	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155628452	G	G	155628452	1	3	4	0	1	0	0	0	0	0	0	0	6562	1856	64	5		5	GMPS	3	155628452	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4465280	155628452	42393978	798	2822											
GMPS	8833	broad.mit.edu	37	chr3	155649697	155649697	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacaggagctagggtggggGcttgtgtaatggaaggatgt	18	4	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155649697	A	A	155649697	1	1	4	0	1	0	0	0	0	0	0	0	6562	1218	42	4		4	GMPS	3	155649697	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	21245	155649697	42372733	799	2823											
RSRC1	51319	broad.mit.edu	37	chr3	157993769	157993769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggttcggtgatccatggGtgtcaggatttcttctgata	12	7	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157993769	T	T	157993769	1	4	4	0	1	0	0	0	0	0	0	0	13825	1276	44	3		3	RSRC1	3	157993769	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2344072	157993769	40028661	800	2824											
MFSD1	64747	broad.mit.edu	37	chr3	158524936	158524936	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaattcttatctaattaattCcattggcaaagctgtgttta	5	6	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158524936	G	G	158524936	1	3	4	0	1	0	0	0	0	0	0	0	9620	870	30	4		4	MFSD1	3	158524936	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	531167	158524936	39497494	801	2825											
MFSD1	64747	broad.mit.edu	37	chr3	158526893	158526893	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagtgccaacattttaAacctgctgcattgctaactg	9	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158526893	T	T	158526893	1	4	4	0	1	0	0	0	0	0	0	0	9620	29	1	5		5	MFSD1	3	158526893	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1957	158526893	39495537	802	2826											
KPNA4	3840	broad.mit.edu	37	chr3	160233407	160233407	+	Intron	DEL	T	-	-													tgacattctatgtgaaatccTtttttttttttttgagacaa					rs112603907		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160233407	-	-	160233407	6	5	4	0	1	1	0	1	0	0	0	0	8503	1624	56	0		0	KPNA4	3	160233407	Intron	DEL	T	TCGA-05-4382-01A-01D-1265-08	1706514	160233407	37789023	803	2827											
SI	6476	broad.mit.edu	37	chr3	164730802	164730802	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccgttagagttttatctAttgttatgttgggcaaatct	8	6	2	1	rs141495440		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164730802	G	G	164730802	3	3	4	1	0	0	0	0	1	0	0	0	14410	449	16	5	1515	5	SI	3	164730802	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	4497395	164730802	33291628	804	2828											
SI	6476	broad.mit.edu	37	chr3	164739041	164739041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttccactgcttctccgtCgaatctggatgccaaaagga	8	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164739041	A	A	164739041	3	1	4	1	0	0	0	0	1	0	0	0	14410	884	31	3	2341	3	SI	3	164739041	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	8239	164739041	33283389	805	2829											
SI	6476	broad.mit.edu	37	chr3	164792404	164792404	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacattttcctgaatcagaaGgatttgtagtcacacgagta	9	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164792404	A	A	164792404	3	1	4	1	0	0	0	0	1	0	0	0	14410	1000	35	4	5497	4	SI	3	164792404	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	53363	164792404	33230026	806	2830											
ZBBX	79740	broad.mit.edu	37	chr3	167033485	167033485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacagatgattttgtgtGtgtgtcaggagggggctcaa	15	4	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167033485	T	T	167033485	1	4	4	0	1	0	0	0	0	0	0	0	17643	1392	48	3		3	ZBBX	3	167033485	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2241081	167033485	30988945	807	2831											
ZBBX	79740	broad.mit.edu	37	chr3	167045790	167045790	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgatttccggttctccattGacttaacacttcctgaaagg	7	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167045790	T	T	167045790	3	4	4	1	0	0	0	0	1	0	0	0	17643	1299	45	3	1644	3	ZBBX	3	167045790	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	12305	167045790	30976640	808	2832											
SERPINI1	5274	broad.mit.edu	37	chr3	167540929	167540929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaatcttgagtggggagtGgggtcattttcaaaatgaag	14	4	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167540929	T	T	167540929	1	4	4	0	1	0	0	0	0	0	0	0	14231	1363	47	2		2	SERPINI1	3	167540929	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	495139	167540929	30481501	809	2833											
CLDN11	5010	broad.mit.edu	37	chr3	170140990	170140990	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgccctgatgattgctgcctCggtcctgggtctgccggcca	13	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170140990	A	A	170140990	4	1	4	1	0	0	0	0	0	1	0	0	3504	893	31	3	272	3	CLDN11	3	170140990	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2600061	170140990	27881440	810	2834											
SLC7A14	57709	broad.mit.edu	37	chr3	170198101	170198101	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagcaccagaccgcaaacCggatccatgtgatggtggag	12	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170198101	A	A	170198101	3	1	4	1	0	0	0	0	1	0	0	0	14810	652	23	1	353	1	SLC7A14	3	170198101	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	57111	170198101	27824329	811	2835											
SLC2A2	6514	broad.mit.edu	37	chr3	170716031	170716031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaattgcaggtccaattgCtgaatgcagctattgctaaa	9	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170716031	A	A	170716031	3	1	4	1	0	0	0	0	1	0	0	0	14658	797	28	3	257	3	SLC2A2	3	170716031	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	517930	170716031	27306399	812	2836											
SPATA16	83893	broad.mit.edu	37	chr3	172631397	172631397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaacagatttgacccaaaAtggacattttctttgagaat	6	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172631397	T	T	172631397	1	4	4	0	1	0	0	0	0	0	0	0	15117	116	4	5		5	SPATA16	3	172631397	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1915366	172631397	25391033	813	2837											
NLGN1	22871	broad.mit.edu	37	chr3	173997440	173997440	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaaattttgctaaaactgGgtatgtacctaaggaatgaa	9	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173997440	C	C	173997440	3	2	4	1	0	0	0	0	1	0	0	0	10556	1246	43	4	1663	4	NLGN1	3	173997440	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1366043	173997440	24024990	814	2838											
NLGN1	22871	broad.mit.edu	37	chr3	173998184	173998184	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaaagcattgctgagtcatCtatttaattattagatgtta	6	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173998184	A	A	173998184	1	1	4	0	1	0	0	0	0	0	0	0	10556	928	32	3		3	NLGN1	3	173998184	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	744	173998184	24024246	815	2839											
MFN1	55669	broad.mit.edu	37	chr3	179104473	179104473	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttactgaaatatgacatacAtgcagaaaaagcacaaaata	6	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179104473	T	T	179104473	1	4	4	0	1	0	0	0	0	0	0	0	9616	232	8	5		5	MFN1	3	179104473	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	5106289	179104473	18917957	816	2840											
PEX5L	51555	broad.mit.edu	37	chr3	179754551	179754551	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggccggcggccactcggCagcgctgcgggctgccggga	19	16	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179754551	A	A	179754551	1	1	4	0	1	0	0	0	0	0	0	0	11844	725	25	3		3	PEX5L	3	179754551	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	650078	179754551	18267879	817	2841											
CCDC39	339829	broad.mit.edu	37	chr3	180366130	180366130	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcacaccttttatgaggttCagttgaacatctacttcctg	7	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180366130	A	A	180366130	2	1	4	1	0	0	0	0	0	0	0	1	2838	813	29	3		3	CCDC39	3	180366130	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	611579	180366130	17656300	818	2842											
ATP11B	23200	broad.mit.edu	37	chr3	182605388	182605388	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctagacattgtatgacagCgtgtacctgactttatacaa	7	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182605388	T	T	182605388	2	4	4	1	0	0	0	0	0	0	0	1	1124	767	27	4		4	ATP11B	3	182605388	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2239258	182605388	15417042	819	2843											
ABCC5	10057	broad.mit.edu	37	chr3	183639209	183639209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaaaagaaggagacgcCgtcaggacacagctctgggt	13	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183639209	A	A	183639209	1	1	4	0	1	0	0	0	0	0	0	0	56	667	23	1		1	ABCC5	3	183639209	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1033821	183639209	14383221	820	2844											
HTR3C	170572	broad.mit.edu	37	chr3	183770791	183770791	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattcaaaaccagcaaccaGggtgtggtctgagctccttt	10	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183770791	T	T	183770791	1	4	4	0	1	0	0	0	0	0	0	0	7516	1015	35	2		2	HTR3C	3	183770791	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	131582	183770791	14251639	821	2845											
HTR3C	170572	broad.mit.edu	37	chr3	183773093	183773093	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcctgagtggaaatttccTtgtcaggatgcacagctcca	9	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183773093	C	C	183773093	1	2	4	0	1	0	0	0	0	0	0	0	7516	1624	56	5		5	HTR3C	3	183773093	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2302	183773093	14249337	822	2846											
ALG3	10195	broad.mit.edu	37	chr3	183960709	183960709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcggctgaagcagatgCcaatgaagttggaggtgaag	18	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183960709	A	A	183960709	3	1	4	1	0	0	0	0	1	0	0	0	520	739	26	3	278	3	ALG3	3	183960709	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	187616	183960709	14061721	823	2847											
EIF4G1	1981	broad.mit.edu	37	chr3	184043038	184043038	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgagaagttcctggtctgAtgcctttctccttcctagcc	8	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184043038	T	T	184043038	1	4	4	0	1	0	0	0	0	0	0	0	5078	348	12	5		5	EIF4G1	3	184043038	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	82329	184043038	13979392	824	2848											
ETV5	2119	broad.mit.edu	37	chr3	185798879	185798879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatagttagcaccaagagcCtgctcatggctacaagacga	9	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185798879	A	A	185798879	3	1	4	1	0	0	0	0	1	0	0	0	5324	680	24	2	1246	2	ETV5	3	185798879	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1755841	185798879	12223551	825	2849											
DGKG	1608	broad.mit.edu	37	chr3	185969722	185969722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataacctgtggaggacagCactgcatttgccaccacagc	9	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185969722	A	A	185969722	1	1	4	0	1	0	0	0	0	0	0	0	4509	725	25	3		3	DGKG	3	185969722	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	170843	185969722	12052708	826	2850											
AHSG	197	broad.mit.edu	37	chr3	186338719	186338719	+	Nonstop_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagacacttcaaggtctaGgctagacatggcagagatga	11	8	3	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186338719	T	T	186338719	4	4	4	1	0	0	0	0	0	0	0	0	420	995	35	2	1130	2	AHSG	3	186338719	Nonstop_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	368997	186338719	11683711	827	2851											
EIF4A2	1974	broad.mit.edu	37	chr3	186501346	186501346	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacgagcctataaaaaacGggtggttgggcgccgctgtc	14	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186501346	T	T	186501346	1	4	4	0	1	0	0	0	0	0	0	0	5067	1131	39	1		1	EIF4A2	3	186501346	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	162627	186501346	11521084	828	2852											
EIF4A2	1974	broad.mit.edu	37	chr3	186504801	186504801	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctgggctctaagtgctagGatcccaaagggctgggatta	13	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186504801	T	T	186504801	1	4	4	0	1	0	0	0	0	0	0	0	5067	1189	41	3		3	EIF4A2	3	186504801	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3455	186504801	11517629	829	2853											
TP63	8626	broad.mit.edu	37	chr3	189590799	189590799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacagtgagtgtatcaacGtgtcattttaggaggcatga	12	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189590799	T	T	189590799	1	4	4	0	1	0	0	0	0	0	0	0	16516	1160	40	3		3	TP63	3	189590799	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3085998	189590799	8431631	830	2854											
CCDC50	152137	broad.mit.edu	37	chr3	191087848	191087848	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacaattcctgcatcatgatCtattctatccttagactcaa	3	11	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191087848	G	G	191087848	1	3	4	0	1	0	0	0	0	0	0	0	2848	928	32	4		4	CCDC50	3	191087848	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1497049	191087848	6934582	831	2855											
C3orf21	152002	broad.mit.edu	37	chr3	194947589	194947589	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatcgtggaagatgacctgCagcaggtgcaaaaaaaacca	10	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	194947589	G	G	194947589	1	3	4	0	1	0	0	0	0	0	0	0	2236	725	25	4		4	C3orf21	3	194947589	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3859741	194947589	3074841	832	2856											
LRCH3	84859	broad.mit.edu	37	chr3	197544201	197544220	+	Intron	DEL	ATGTGTGTGTGTGTGTCTGT	-	-													aatatttttgattgtccaacAtgtgtgtgtgtgtgtctgtg					rs1273552	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197544220	-	-	197544201	6	5	4	0	1	1	0	1	0	0	0	0	9021	232	8	0		0	LRCH3	3	197544201	Intron	DEL	ATGTGTGTGTGTGTGTCTGT	TCGA-05-4382-01A-01D-1265-08	2596612	197544201	478229	833	2857											
ZNF595	152687	broad.mit.edu	37	chr4	64810	64810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaggtttcacaagtctcCatgtgggtccctgagtgtgt	12	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64810	A	A	64810	1	1	4	0	1	0	0	0	0	0	0	0	18152	609	21	2		2	ZNF595	4	64810	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		64810	191089466	834	2858											
TMEM175	84286	broad.mit.edu	37	chr4	945483	945483	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccaggcctgcatgatgaCcatcaccttcctgccttaca	6	17	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	945483	G	G	945483	3	3	4	1	0	0	0	0	1	0	0	0	16214	507	18	4	374	4	TMEM175	4	945483	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	880673	945483	190208793	835	2859											
POLN	353497	broad.mit.edu	37	chr4	2195097	2195097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaatttgggattttcgacCttggaaaaatattattacta	6	4	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2195097	A	A	2195097	1	1	4	0	1	0	0	0	0	0	0	0	12302	696	24	2		2	POLN	4	2195097	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1249614	2195097	188959179	836	2860											
ADD1	118	broad.mit.edu	37	chr4	2883688	2883689	+	Missense_Mutation	DNP	GG	TT	TT													agaaggggaagaaccccacaGgcctattggcattacagcag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2883689	TT	TT	2883688	3	4	4	1	0	0	0	0	1	0	0	0	304	1000	35	2	265	2	ADD1	4	2883688	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	688591	2883688	188270588	837	2861											
HTT	3064	broad.mit.edu	37	chr4	3211514	3211514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaagtccccttgaacgCcgcccatcatgttcccctta	7	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3211514	T	T	3211514	1	4	4	0	1	0	0	0	0	0	0	0	7527	754	26	4		4	HTT	4	3211514	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	327826	3211514	187942762	838	2862											
C4orf44	345222	broad.mit.edu	37	chr4	3265616	3265616	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttttttccacacagatatCccgttgttacagcaccgttt	5	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3265616	T	T	3265616	3	4	4	1	0	0	0	0	1	0	0	0	2295	870	30	4		4	C4orf44	4	3265616	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	54102	3265616	187888660	839	2863											
HGFAC	3083	broad.mit.edu	37	chr4	3444356	3444356	+	Intron	DEL	G	-	-													tggaacctgctccgagatctGggggccccagtatggaaaca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3444356	-	-	3444356	6	5	4	0	1	1	0	1	0	0	0	0	7153	1363	47	0		0	HGFAC	4	3444356	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	178740	3444356	187709920	840	2864											
ADRA2C	152	broad.mit.edu	37	chr4	3769412	3769412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagttcttcctgtcgcgccGgcgccgggcgcgcagcagcg	16	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3769412	T	T	3769412	3	4	4	1	0	0	0	0	1	0	0	0	339	1116	39	1	1081	1	ADRA2C	4	3769412	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	325056	3769412	187384864	841	2865											
ZBTB49	166793	broad.mit.edu	37	chr4	4304252	4304252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccataaacacgcagctgGtcccagtcaggagagagttg	12	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4304252	T	T	4304252	3	4	4	1	0	0	0	0	1	0	0	0	17676	1261	44	3	695	3	ZBTB49	4	4304252	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	534840	4304252	186850024	842	2866											
STK32B	55351	broad.mit.edu	37	chr4	5332984	5332984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaggacatgttcatggtgGtggacctgctcctgggaggc	17	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5332984	C	C	5332984	3	2	4	1	0	0	0	0	1	0	0	0	15416	1261	44	4	312	4	STK32B	4	5332984	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1028732	5332984	185821292	843	2867											
CRMP1	1400	broad.mit.edu	37	chr4	5827414	5827414	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggaagggagagtgtgattGatcgacactgtgcatgtgtg	17	4	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5827414	C	C	5827414	1	2	4	0	1	0	0	0	0	0	0	0	3922	1305	45	4		4	CRMP1	4	5827414	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	494430	5827414	185326862	844	2868											
CRMP1	1400	broad.mit.edu	37	chr4	5853114	5853114	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcccagacaagagaggagaGagtgagtgtgagggacctac	16	7	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5853114	T	T	5853114	1	4	4	0	1	0	0	0	0	0	0	0	3922	957	33	3		3	CRMP1	4	5853114	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	25700	5853114	185301162	845	2869											
JAKMIP1	152789	broad.mit.edu	37	chr4	6082119	6082119	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgctggagtggagctcaGgggtgcagggacagaaggat	19	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6082119	A	A	6082119	1	1	4	0	1	0	0	0	0	0	0	0	8010	1015	35	4		4	JAKMIP1	4	6082119	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	229005	6082119	185072157	846	2870											
HTRA3	94031	broad.mit.edu	37	chr4	8307701	8307701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctcctgttggcagaggCggcatccaagatggtgacat	13	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8307701	A	A	8307701	2	1	4	1	0	0	0	0	0	0	0	1	7525	755	27	3		3	HTRA3	4	8307701	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2225582	8307701	182846575	847	2871											
ACOX3	8310	broad.mit.edu	37	chr4	8418141	8418141	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctccccttccgtgaacagCgccagctccttccagctgaa	7	19	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8418141	T	T	8418141	2	4	4	1	0	0	0	0	0	0	0	1	160	755	27	4		4	ACOX3	4	8418141	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	110440	8418141	182736135	848	2872											
GPR78	27201	broad.mit.edu	37	chr4	8584301	8584301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaagcggcgccgccacCgcgccaccaggaagattggc	14	15	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8584301	A	A	8584301	3	1	4	1	0	0	0	0	1	0	0	0	6775	652	23	1	718	1	GPR78	4	8584301	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	166160	8584301	182569975	849	2873											
SLC2A9	56606	broad.mit.edu	37	chr4	9836765	9836765	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgtgtagtgggccccagttCctgagtcgccctggtggcat	14	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9836765	A	A	9836765	1	1	4	0	1	0	0	0	0	0	0	0	14666	870	30	3		3	SLC2A9	4	9836765	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1252464	9836765	181317511	850	2874											
SLC2A9	56606	broad.mit.edu	37	chr4	9987248	9987248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacattttgggacaccccCaaggagtatgttactgttcc	8	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9987248	A	A	9987248	1	1	4	0	1	0	0	0	0	0	0	0	14666	609	21	2		2	SLC2A9	4	9987248	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	150483	9987248	181167028	851	2875											
BOD1L	259282	broad.mit.edu	37	chr4	13603176	13603176	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactctcaccttctgtaccaTcattcacagaaccatctcct	2	17	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13603176	C	C	13603176	3	2	4	1	0	0	0	0	1	0	0	0	1489	1435	50	5	3875	5	BOD1L	4	13603176	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	3615928	13603176	177551100	852	2876											
BOD1L	259282	broad.mit.edu	37	chr4	13603372	13603372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttcttttttgggacCcattctcatcatatttccct	4	12	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13603372	A	A	13603372	3	1	4	1	0	0	0	0	1	0	0	0	1489	623	22	2	4071	2	BOD1L	4	13603372	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	196	13603372	177550904	853	2877											
BOD1L	259282	broad.mit.edu	37	chr4	13606630	13606630	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagactctgaaagtctccGggcaggtttacttggttcac	10	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13606630	A	A	13606630	3	1	4	1	0	0	0	0	1	0	0	0	1489	1115	39	4	7329	4	BOD1L	4	13606630	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3258	13606630	177547646	854	2878											
BST1	683	broad.mit.edu	37	chr4	15732624	15732624	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcctatggtgctctcgatAtataaggcccggacattctg	10	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15732624	T	T	15732624	1	4	4	0	1	0	0	0	0	0	0	0	1542	464	16	5		5	BST1	4	15732624	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2125994	15732624	175421652	855	2879											
LDB2	9079	broad.mit.edu	37	chr4	16590406	16590406	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgccatgttttgattctcAtgagatcatcaaaggtgaac	9	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16590406	T	T	16590406	3	4	4	1	0	0	0	0	1	0	0	0	8768	217	8	5	792	5	LDB2	4	16590406	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	857782	16590406	174563870	856	2880											
DCAF16	54876	broad.mit.edu	37	chr4	17805188	17805188	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataagtagtgttgatgggttCagtacgagttgtttccttaa	11	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17805188	G	G	17805188	3	3	4	1	0	0	0	0	1	0	0	0	4301	835	29	4	77	4	DCAF16	4	17805188	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1214782	17805188	173349088	857	2881											
NCAPG	64151	broad.mit.edu	37	chr4	17826562	17826562	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgatatatcaaacatAtattaaagcatgtactctga	5	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17826562	T	T	17826562	1	4	4	0	1	0	0	0	0	0	0	0	10302	464	16	5		5	NCAPG	4	17826562	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	21374	17826562	173327714	858	2882											
SLIT2	9353	broad.mit.edu	37	chr4	20493587	20493587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaaactttgattttctttGggaaattctgagtttatcga	7	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20493587	T	T	20493587	1	4	4	0	1	0	0	0	0	0	0	0	14854	1363	47	2		2	SLIT2	4	20493587	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2667025	20493587	170660689	859	2883											
SLIT2	9353	broad.mit.edu	37	chr4	20552452	20552452	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctttttctttcttttagttCtctacatggaaatgacattt	4	7	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20552452	A	A	20552452	3	1	4	1	0	0	0	0	1	0	0	0	14854	913	32	3	2590	3	SLIT2	4	20552452	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	58865	20552452	170601824	860	2884											
SLIT2	9353	broad.mit.edu	37	chr4	20618454	20618454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggttggcagtgaggtccCaagcatcagtatttctgagt	12	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20618454	A	A	20618454	1	1	4	0	1	0	0	0	0	0	0	0	14854	609	21	2		2	SLIT2	4	20618454	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	66002	20618454	170535822	861	2885											
GPR125	166647	broad.mit.edu	37	chr4	22390299	22390299	+	Frame_Shift_Del	DEL	C	-	-													taagagcaaagtaaggctggCccccaagagctgagaatgaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22390299	-	-	22390299	7	5	4	1	0	1	0	1	0	0	0	0	6704	739	26	0	974	0	GPR125	4	22390299	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	1771845	22390299	168763977	862	2886											
GPR125	166647	broad.mit.edu	37	chr4	22436933	22436933	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgaatttagagaagtaCctcttttgatttttcctcct	5	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22436933	A	A	22436933	5	1	4	1	0	0	0	0	0	0	1	0	6704	521	18	3	2561	3	GPR125	4	22436933	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	46634	22436933	168717343	863	2887											
PPARGC1A	10891	broad.mit.edu	37	chr4	23886328	23886328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaccatgttagtcgggccCaagccaaactcaatgaaaaa	7	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23886328	A	A	23886328	1	1	4	0	1	0	0	0	0	0	0	0	12396	609	21	2		2	PPARGC1A	4	23886328	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1449395	23886328	167267948	864	2888											
ATP8A1	10396	broad.mit.edu	37	chr4	42554681	42554681	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtgaacattttgacacTgacagtaatattacttcatg	6	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42554681	A	A	42554681	1	1	4	0	1	0	0	0	0	0	0	0	1196	1595	55	5		5	ATP8A1	4	42554681	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	18668353	42554681	148599595	865	2889											
ATP8A1	10396	broad.mit.edu	37	chr4	42588499	42588499	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctggtaagccctgttTggaatttttaaataagcaaa	9	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42588499	G	G	42588499	1	3	4	0	1	0	0	0	0	0	0	0	1196	1827	63	5		5	ATP8A1	4	42588499	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	33818	42588499	148565777	866	2890											
GABRG1	2565	broad.mit.edu	37	chr4	46099196	46099196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaatggtcatcaaaatccCagaatggtaactcaagctta	6	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46099196	A	A	46099196	1	1	4	0	1	0	0	0	0	0	0	0	6231	609	21	2		2	GABRG1	4	46099196	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3510697	46099196	145055080	867	2891											
GABRA2	2555	broad.mit.edu	37	chr4	46314638	46314638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtccagattttgctagcCattaaattgtttagtcgaag	10	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46314638	A	A	46314638	3	1	4	1	0	0	0	0	1	0	0	0	6221	594	21	2	1028	2	GABRA2	4	46314638	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	215442	46314638	144839638	868	2892											
ATP10D	57205	broad.mit.edu	37	chr4	47570974	47570974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgtcccccgggactcaGggttacgagctggactcatt	11	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47570974	T	T	47570974	3	4	4	1	0	0	0	0	1	0	0	0	1122	1000	35	2	3032	2	ATP10D	4	47570974	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1256336	47570974	143583302	869	2893											
CORIN	10699	broad.mit.edu	37	chr4	47667122	47667122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaagaaaagaacatgaGgtatttataacagttggttt	11	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47667122	T	T	47667122	3	4	4	1	0	0	0	0	1	0	0	0	3784	1000	35	2	1660	2	CORIN	4	47667122	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	96148	47667122	143487154	870	2894											
FRYL	285527	broad.mit.edu	37	chr4	48621362	48621362	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccctcctttcaagaagatAatctctttcacgttgctgtt	6	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48621362	G	G	48621362	3	3	4	1	0	0	0	0	1	0	0	0	6124	362	13	5	8933	5	FRYL	4	48621362	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	954240	48621362	142532914	871	2895											
OCIAD2	132299	broad.mit.edu	37	chr4	48894769	48894769	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataattacattacaatccctCaaccaaacagattacaaacc	1	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48894769	T	T	48894769	1	4	4	0	1	0	0	0	0	0	0	0	10913	841	29	4		4	OCIAD2	4	48894769	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	273407	48894769	142259507	872	2896											
CWH43	80157	broad.mit.edu	37	chr4	49032794	49032794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgttgctaattgttttttGccttgctgtgattcatcact	8	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49032794	T	T	49032794	1	4	4	0	1	0	0	0	0	0	0	0	4106	1334	46	3		3	CWH43	4	49032794	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	138025	49032794	142121482	873	2897											
CWH43	80157	broad.mit.edu	37	chr4	49032885	49032885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtgatgcttctaagccCtatatggggaacaatgactt	11	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49032885	A	A	49032885	2	1	4	1	0	0	0	0	0	0	0	1	4106	668	24	2		2	CWH43	4	49032885	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	91	49032885	142121391	874	2898											
CWH43	80157	broad.mit.edu	37	chr4	49052637	49052637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactggtttaataacaaagGggtatcacttggatctcgtt	9	6	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49052637	T	T	49052637	1	4	4	0	1	0	0	0	0	0	0	0	4106	1247	43	2		2	CWH43	4	49052637	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	19752	49052637	142101639	875	2899											
LRRC66	339977	broad.mit.edu	37	chr4	52860889	52860889	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagggatcttcttgattctTgcatttccctggaattgttt	8	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52860889	G	G	52860889	3	3	4	1	0	0	0	0	1	0	0	0	9105	1821	63	5	347	5	LRRC66	4	52860889	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	3808252	52860889	138293387	876	2900											
LRRC66	339977	broad.mit.edu	37	chr4	52861975	52861975	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctggcactttttttgccAcagtctgtcaacataaggcc	8	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52861975	G	G	52861975	3	3	4	1	0	0	0	0	1	0	0	0	9105	159	6	5	1433	5	LRRC66	4	52861975	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1086	52861975	138292301	877	2901											
LRRC66	339977	broad.mit.edu	37	chr4	52883214	52883214	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgaacctgaaaacaaatgTggaattcttatgaacatgaa	7	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52883214	A	A	52883214	1	1	4	0	1	0	0	0	0	0	0	0	9105	1711	59	5		5	LRRC66	4	52883214	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	21239	52883214	138271062	878	2902											
PDGFRA	5156	broad.mit.edu	37	chr4	55139722	55139722	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatgtaataatgaaacttcCtggactattttggccaacaa	7	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55139722	G	G	55139722	2	3	4	1	0	0	0	0	0	0	0	1	11755	668	24	4		4	PDGFRA	4	55139722	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2256508	55139722	136014554	879	2903											
PDGFRA	5156	broad.mit.edu	37	chr4	55140699	55140699	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctctcttgtcacgtagcCctgcgttctgaactcacggt	8	14	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55140699	T	T	55140699	2	4	4	1	0	0	0	0	0	0	0	1	11755	637	22	4		4	PDGFRA	4	55140699	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	977	55140699	136013577	880	2904											
PDGFRA	5156	broad.mit.edu	37	chr4	55155037	55155037	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagtgggtaccggatgGccaagcctgaccacgctacc	12	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55155037	A	A	55155037	3	1	4	1	0	0	0	0	1	0	0	0	11755	1203	42	4	2820	4	PDGFRA	4	55155037	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	14338	55155037	135999239	881	2905											
KDR	3791	broad.mit.edu	37	chr4	55968157	55968157	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctccttcctcactctgcGgatagtgaggttccggttcc	10	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55968157	A	A	55968157	3	1	4	1	0	0	0	0	1	0	0	0	8209	1116	39	4	1961	4	KDR	4	55968157	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	813120	55968157	135186119	882	2906											
CEP135	9662	broad.mit.edu	37	chr4	56865740	56865740	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgttattgataaagaaaaaGactttctccaggagactgta	9	5	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56865740	A	A	56865740	3	1	4	1	0	0	0	0	1	0	0	0	3277	942	33	4	2271	4	CEP135	4	56865740	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	897583	56865740	134288536	883	2907											
ARL9	132946	broad.mit.edu	37	chr4	57390053	57390053	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcagtgaccaggactcaGcccactgtgcggctcacgac	12	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57390053	T	T	57390053	1	4	4	0	1	0	0	0	0	0	0	0	952	986	34	3		3	ARL9	4	57390053	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	524313	57390053	133764223	884	2908											
LPHN3	23284	broad.mit.edu	37	chr4	62812745	62812745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaaatcattctgttattGtcaattcccctgttattacg	4	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62812745	T	T	62812745	3	4	4	1	0	0	0	0	1	0	0	0	9004	1377	48	3	2379	3	LPHN3	4	62812745	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	5422692	62812745	128341531	885	2909											
LPHN3	23284	broad.mit.edu	37	chr4	62845250	62845250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaattggttatgcataagcGcaacttatggctttttcatt	8	6	1	0	rs2271337	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62845250	T	T	62845250	1	4	4	0	1	0	0	0	0	0	0	0	9004	1102	38	3		3	LPHN3	4	62845250	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	32505	62845250	128309026	886	2910											
EPHA5	2044	broad.mit.edu	37	chr4	66280039	66280039	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactcaaatcttcgactgaaGacaccatagcctgctgctgt	7	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66280039	T	T	66280039	2	4	4	1	0	0	0	0	0	0	0	1	5212	929	33	3		3	EPHA5	4	66280039	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	3434789	66280039	124874237	887	2911											
UBA6	55236	broad.mit.edu	37	chr4	68504786	68504786	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgttcaggtgtgcatctatCtttatttgagaatttatttt	7	4	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68504786	A	A	68504786	3	1	4	1	0	0	0	0	1	0	0	0	16958	912	32	3	1607	3	UBA6	4	68504786	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2224747	68504786	122649490	888	2912											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68934426	68934426	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accctatgagctggaggctgGcctgccatggccattcccct	11	15	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68934426	C	C	68934426	3	2	4	1	0	0	0	0	1	0	0	0	16366	1203	42	4	667	4	TMPRSS11F	4	68934426	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	429640	68934426	122219850	889	2913											
UGT2B10	7365	broad.mit.edu	37	chr4	69693259	69693259	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactgaagacagtaattaatGatccttcgtgagtagaacaa	8	7	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69693259	T	T	69693259	3	4	4	1	0	0	0	0	1	0	0	0	17082	1290	45	3	1318	3	UGT2B10	4	69693259	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	758833	69693259	121461017	890	2914											
UGT2B10	7365	broad.mit.edu	37	chr4	69870792	69870793	+	Missense_Mutation	DNP	CC	AA	AA													aatccagaagactgctcgatCcaagggcttcactggttgat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	69870793	AA	AA	69870792	3	1	4	1	0	0	0	0	1	0	0	0	17082	855	30	3	1832	3	UGT2B10	4	69870792	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	177533	69870792	121283484	891	2915											
UGT2B7	7364	broad.mit.edu	37	chr4	69962824	69962824	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctccttcctacgtacctGttgttatgtcagaattaact	5	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69962824	A	A	69962824	3	1	4	1	0	0	0	0	1	0	0	0	17088	1377	48	4	588	4	UGT2B7	4	69962824	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	92032	69962824	121191452	892	2916											
SULT1B1	27284	broad.mit.edu	37	chr4	70620591	70620591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaatttattggaaacaCtaccatcttaacacattcta	4	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70620591	A	A	70620591	1	1	4	0	1	0	0	0	0	0	0	0	15494	580	20	3		3	SULT1B1	4	70620591	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	657767	70620591	120533685	893	2917											
CSN1S1	1446	broad.mit.edu	37	chr4	70810635	70810635	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtactatccacaaatcatgcAgtatgttcctttcccaccgt	5	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70810635	T	T	70810635	3	4	4	1	0	0	0	0	1	0	0	0	3981	188	7	5	524	5	CSN1S1	4	70810635	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	190044	70810635	120343641	894	2918											
C4orf40	401137	broad.mit.edu	37	chr4	71027333	71027333	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattctctagaagagtacCatgggttcatttctgtaagt	9	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71027333	A	A	71027333	1	1	4	0	1	0	0	0	0	0	0	0	2292	609	21	2		2	C4orf40	4	71027333	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	216698	71027333	120126943	895	2919											
MUC7	4589	broad.mit.edu	37	chr4	71346841	71346841	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccaaaattactacccttcCaaatgtgacttttcttcccc	2	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71346841	G	G	71346841	3	3	4	1	0	0	0	0	1	0	0	0	10075	594	21	4	386	4	MUC7	4	71346841	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	319508	71346841	119807435	896	2920											
MUC7	4589	broad.mit.edu	37	chr4	71347516	71347516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaccaacttcagctcctgGccaaaataaaatttctcgat	4	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71347516	T	T	71347516	3	4	4	1	0	0	0	0	1	0	0	0	10075	1203	42	3	1061	3	MUC7	4	71347516	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	675	71347516	119806760	897	2921											
AMTN	401138	broad.mit.edu	37	chr4	71384525	71384525	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgattctactgttttgtcttCtaggatcaactcggtcatta	7	9	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71384525	T	T	71384525	2	4	4	1	0	0	0	0	0	0	0	1	590	912	32	4		4	AMTN	4	71384525	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	37009	71384525	119769751	898	2922											
ENAM	10117	broad.mit.edu	37	chr4	71497577	71497577	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttccagatgcacatgccCcgaatgcctggatttagcag	9	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71497577	A	A	71497577	2	1	4	1	0	0	0	0	0	0	0	1	5154	610	22	2		2	ENAM	4	71497577	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	113052	71497577	119656699	899	2923											
GC	2638	broad.mit.edu	37	chr4	72611836	72611836	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacatcctacaatgctggatCcgttggtcctgcatttataa	7	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72611836	A	A	72611836	1	1	4	0	1	0	0	0	0	0	0	0	6344	870	30	3		3	GC	4	72611836	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1114259	72611836	118542440	900	2924											
ADAMTS3	9508	broad.mit.edu	37	chr4	73149155	73149155	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggacctcccactgaagagaTgctactcaaagacatcttct	7	12	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73149155	A	A	73149155	3	1	4	1	0	0	0	0	1	0	0	0	267	1464	51	5	305	5	ADAMTS3	4	73149155	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	537319	73149155	118005121	901	2925											
ANKRD17	26057	broad.mit.edu	37	chr4	74007528	74007528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctgaggtggaacaacCatgggcagtgcttgaactgg	15	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74007528	A	A	74007528	3	1	4	1	0	0	0	0	1	0	0	0	646	594	21	2	5633	2	ANKRD17	4	74007528	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	858373	74007528	117146748	902	2926											
ANKRD17	26057	broad.mit.edu	37	chr4	74026835	74026835	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaggcacaaaataaatgcTcagtaaatgttagctatttg	8	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74026835	A	A	74026835	1	1	4	0	1	0	0	0	0	0	0	0	646	1566	54	5		5	ANKRD17	4	74026835	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	19307	74026835	117127441	903	2927											
AFM	173	broad.mit.edu	37	chr4	74368757	74368757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtttttatttccatccCtcacctcagagtccaaaaat	4	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74368757	T	T	74368757	1	4	4	0	1	0	0	0	0	0	0	0	361	696	24	4		4	AFM	4	74368757	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	341922	74368757	116785519	904	2928											
RASSF6	166824	broad.mit.edu	37	chr4	74447533	74447533	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgatcaagctttcttaCctcctgttgcaaaaataatg	7	8	2	1	rs147074403		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74447533	A	A	74447533	5	1	4	1	0	0	0	0	0	0	1	0	13198	521	18	3	307	3	RASSF6	4	74447533	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	78776	74447533	116706743	905	2929											
CDKL2	8999	broad.mit.edu	37	chr4	76532502	76532502	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagcttgacaacgccagacTgggagactaatatattctct	8	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76532502	A	A	76532502	3	1	4	1	0	0	0	0	1	0	0	0	3184	1580	55	5	1106	5	CDKL2	4	76532502	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2084969	76532502	114621774	906	2930											
PPEF2	5470	broad.mit.edu	37	chr4	76787428	76787428	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagctgttcaccagctgtgGcctcagcatccgccatggca	11	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76787428	A	A	76787428	3	1	4	1	0	0	0	0	1	0	0	0	12404	1203	42	4	439	4	PPEF2	4	76787428	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	254926	76787428	114366848	907	2931											
PPEF2	5470	broad.mit.edu	37	chr4	76793254	76793254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtcagggctggccccaGtttgacataggcccctctgt	14	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76793254	T	T	76793254	3	4	4	1	0	0	0	0	1	0	0	0	12404	1020	36	3	708	3	PPEF2	4	76793254	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	5826	76793254	114361022	908	2932											
NAAA	27163	broad.mit.edu	37	chr4	76857250	76857250	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattttttatcttatatggTacggattatacctgcccatt	6	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76857250	C	C	76857250	1	2	4	0	1	0	0	0	0	0	0	0	10221	1653	57	5		5	NAAA	4	76857250	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	63996	76857250	114297026	909	2933											
ANKRD56	345079	broad.mit.edu	37	chr4	77817798	77817798	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctctcctcactgccatcaCtctcctggtccacaaagtca	5	17	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77817798	G	G	77817798	3	3	4	1	0	0	0	0	1	0	0	0	682	565	20	4	1180	4	ANKRD56	4	77817798	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	960548	77817798	113336478	910	2934											
CXCL13	10563	broad.mit.edu	37	chr4	78527109	78527109	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatttcatttacatttcacTgtttgttgaacagaaatagt	5	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78527109	A	A	78527109	1	1	4	0	1	0	0	0	0	0	0	0	4114	1595	55	5		5	CXCL13	4	78527109	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	709311	78527109	112627167	911	2935											
ANXA3	306	broad.mit.edu	37	chr4	79522677	79522677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttacagttaattgtgtgagGaacacgccggcctttttagc	11	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79522677	T	T	79522677	3	4	4	1	0	0	0	0	1	0	0	0	719	1165	41	3	782	3	ANXA3	4	79522677	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	995568	79522677	111631599	912	2936											
NAA11	84779	broad.mit.edu	37	chr4	80246689	80246689	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgcaaggctggccggtTactcttcctgacgtgcagag	14	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80246689	A	A	80246689	3	1	4	1	0	0	0	0	1	0	0	0	10211	1754	61	5	350	5	NAA11	4	80246689	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	724012	80246689	110907587	913	2937											
PRKG2	5593	broad.mit.edu	37	chr4	82090872	82090872	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggctgtcctcctcattaTattctggaatacctctcgat	7	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82090872	A	A	82090872	3	1	4	1	0	0	0	0	1	0	0	0	12629	1406	49	5	1555	5	PRKG2	4	82090872	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1844183	82090872	109063404	914	2938											
PTPN13	5783	broad.mit.edu	37	chr4	87679886	87679886	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggacctaggcatatttatCagttcagttgcccctggagg	11	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87679886	T	T	87679886	2	4	4	1	0	0	0	0	0	0	0	1	12888	816	29	4		4	PTPN13	4	87679886	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	5589014	87679886	103474390	915	2939											
SLC10A6	345274	broad.mit.edu	37	chr4	87770121	87770121	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggatctccacggaacatcCcaaagagaacatgagcagcc	9	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87770121	A	A	87770121	4	1	4	1	0	0	0	0	0	1	0	0	14491	632	22	2	1009	2	SLC10A6	4	87770121	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	90235	87770121	103384155	916	2940											
MEPE	56955	broad.mit.edu	37	chr4	88767462	88767462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacaaaataattctacacGgaataagggtatgccacaag	8	8	1	1	rs138152179		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88767462	T	T	88767462	3	4	4	1	0	0	0	0	1	0	0	0	9571	1116	39	1	1452	1	MEPE	4	88767462	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	997341	88767462	102386814	917	2941											
FAM13A	10144	broad.mit.edu	37	chr4	89679943	89679943	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacacaatgcagtcaggtccGactggggcacttcggagaca	12	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89679943	C	C	89679943	3	2	4	1	0	0	0	0	1	0	0	0	5498	1059	37	4	1427	4	FAM13A	4	89679943	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	912481	89679943	101474333	918	2942											
SNCA	6622	broad.mit.edu	37	chr4	90743477	90743477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtcttctgggctactgCtgtcacacccgtcaccactg	8	16	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90743477	A	A	90743477	3	1	4	1	0	0	0	0	1	0	0	0	14954	797	28	3	208	3	SNCA	4	90743477	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1063534	90743477	100410799	919	2943											
MMRN1	22915	broad.mit.edu	37	chr4	90844382	90844382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatacagctgttggcagagGagtagctgagcagcagcagc	14	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90844382	T	T	90844382	3	4	4	1	0	0	0	0	1	0	0	0	9764	1174	41	3	928	3	MMRN1	4	90844382	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	100905	90844382	100309894	920	2944											
MMRN1	22915	broad.mit.edu	37	chr4	90856977	90856977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgatgccttagaaagaCgtatcaatgaatatgcctta	9	6	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90856977	A	A	90856977	3	1	4	1	0	0	0	0	1	0	0	0	9764	536	19	3	2168	3	MMRN1	4	90856977	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	12595	90856977	100297299	921	2945											
MMRN1	22915	broad.mit.edu	37	chr4	90857618	90857618	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctccacgaagttttaacAatgtgtcacaatgcttctac	5	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90857618	G	G	90857618	2	3	4	1	0	0	0	0	0	0	0	1	9764	117	5	5		5	MMRN1	4	90857618	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	641	90857618	100296658	922	2946											
MMRN1	22915	broad.mit.edu	37	chr4	90874276	90874276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatggagcttcatataccCcaagaactggaaaatttaga	7	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90874276	A	A	90874276	3	1	4	1	0	0	0	0	1	0	0	0	9764	623	22	2	3424	2	MMRN1	4	90874276	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	16658	90874276	100280000	923	2947											
SMARCAD1	56916	broad.mit.edu	37	chr4	95162122	95162122	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaggaagatgaatttaatGatgatcaatctataaaaaag	8	2	2	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95162122	C	C	95162122	3	2	4	1	0	0	0	0	1	0	0	0	14886	1290	45	4	688	4	SMARCAD1	4	95162122	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4287846	95162122	95992154	924	2948											
BMPR1B	658	broad.mit.edu	37	chr4	96051084	96051084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcgctatggggaagtttgGatgggaaagtggcgtggcga	20	4	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96051084	T	T	96051084	3	4	4	1	0	0	0	0	1	0	0	0	1476	1183	41	3	679	3	BMPR1B	4	96051084	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	888962	96051084	95103192	925	2949											
EIF4E	1977	broad.mit.edu	37	chr4	99806244	99806244	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcccaaattacatttaataGattataaacaagctcattac	2	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99806244	C	C	99806244	1	2	4	0	1	0	0	0	0	0	0	0	5070	957	33	4		4	EIF4E	4	99806244	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3755160	99806244	91348032	926	2950											
C4orf17	84103	broad.mit.edu	37	chr4	100458876	100458876	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgattctctggcagaagtTttacagtggctgcttcatgc	10	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100458876	A	A	100458876	2	1	4	1	0	0	0	0	0	0	0	1	2275	1828	64	5		5	C4orf17	4	100458876	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	652632	100458876	90695400	927	2951											
MTTP	4547	broad.mit.edu	37	chr4	100503252	100503253	+	Intron	DNP	GG	CT	CT													cagttgatccaaataacggtGggcattttctaccagataaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	100503253	CT	CT	100503252	1	2	4	0	1	0	0	0	0	0	0	0	10058	1363	47	4		4	MTTP	4	100503252	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	44376	100503252	90651024	928	2952											
CENPE	1062	broad.mit.edu	37	chr4	104060924	104060924	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttattaatagttactacaCaaaggaagactctgaactca	5	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104060924	T	T	104060924	1	4	4	0	1	0	0	0	0	0	0	0	3260	493	17	4		4	CENPE	4	104060924	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3557672	104060924	87093352	929	2953											
CENPE	1062	broad.mit.edu	37	chr4	104061453	104061453	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatttatctaaatcctttTgaatgtctgaaatttgaatt	5	4	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104061453	G	G	104061453	3	3	4	1	0	0	0	0	1	0	0	0	3260	1812	63	5	2284	5	CENPE	4	104061453	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	529	104061453	87092823	930	2954											
NPNT	255743	broad.mit.edu	37	chr4	106888662	106888662	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttcataggagaactctgGgatctgaatttgaagaagcc	10	8	3	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106888662	A	A	106888662	1	1	4	0	1	0	0	0	0	0	0	0	10685	1247	43	4		4	NPNT	4	106888662	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2827209	106888662	84265614	931	2955											
PAPSS1	9061	broad.mit.edu	37	chr4	108576141	108576141	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctttcacttcaggggacActtttcaaataataaaaggc	6	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108576141	C	C	108576141	1	2	4	0	1	0	0	0	0	0	0	0	11528	174	6	5		5	PAPSS1	4	108576141	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1687479	108576141	82578135	932	2956											
LEF1	51176	broad.mit.edu	37	chr4	108985506	108985506	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctacctgatgcagattccTgtagtttctctctcttcctc	6	14	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108985506	A	A	108985506	3	1	4	1	0	0	0	0	1	0	0	0	8786	1580	55	5	140	5	LEF1	4	108985506	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	409365	108985506	82168770	933	2957											
OSTC	58505	broad.mit.edu	37	chr4	109571951	109571951	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacttcctcatcaccggagGtaactcgggctgtcgggccc	11	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109571951	T	T	109571951	5	4	4	1	0	0	0	0	0	0	1	0	11390	1275	44	3	142	3	OSTC	4	109571951	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	586445	109571951	81582325	934	2958											
AGXT2L1	64850	broad.mit.edu	37	chr4	109672096	109672096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcaagtacatactctgCcactttctggaagtagcctg	8	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109672096	A	A	109672096	3	1	4	1	0	0	0	0	1	0	0	0	406	739	26	3	830	3	AGXT2L1	4	109672096	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	100145	109672096	81482180	935	2959											
COL25A1	84570	broad.mit.edu	37	chr4	109740455	109740455	+	Frame_Shift_Del	DEL	C	-	-													caggccaggctggcctggctCccctttttcccccttaacgc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109740455	-	-	109740455	7	5	4	1	0	1	0	1	0	0	0	0	3716	864	30	0	100	0	COL25A1	4	109740455	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	68359	109740455	81413821	936	2960											
EGF	1950	broad.mit.edu	37	chr4	110915780	110915780	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctagtagttcttctgtcActaaaagatttatgtcacaa	5	8	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110915780	T	T	110915780	1	4	4	0	1	0	0	0	0	0	0	0	5002	174	6	5		5	EGF	4	110915780	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1175325	110915780	80238496	937	2961											
ALPK1	80216	broad.mit.edu	37	chr4	113356453	113356453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcaagaagaaattctgGggaggtattacttaaaaaca	8	5	3	2	rs142605222		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113356453	T	T	113356453	3	4	4	1	0	0	0	0	1	0	0	0	544	1232	43	2	3222	2	ALPK1	4	113356453	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2440673	113356453	77797823	938	2962											
ANK2	287	broad.mit.edu	37	chr4	114278434	114278434	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaacatttgagaacttacCaaaggactgcccctctcaag	7	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114278434	T	T	114278434	3	4	4	1	0	0	0	0	1	0	0	0	621	594	21	4	8875	4	ANK2	4	114278434	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	921981	114278434	76875842	939	2963											
ANK2	287	broad.mit.edu	37	chr4	114279550	114279551	+	Nonsense_Mutation	DNP	CC	AA	AA													acaagtccagttagatttttCcacactcaccaggtctgttt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	114279551	AA	AA	114279550	4	1	4	1	0	0	0	0	0	1	0	0	621	855	30	3	9991	3	ANK2	4	114279550	Nonsense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	1116	114279550	76874726	940	2964											
NDST3	9348	broad.mit.edu	37	chr4	119026344	119026344	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttttcctgcccacactgtCctacattccctatgttcctc	3	17	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119026344	A	A	119026344	1	1	4	0	1	0	0	0	0	0	0	0	10352	870	30	3		3	NDST3	4	119026344	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4746794	119026344	72127932	941	2965											
TRPC3	7222	broad.mit.edu	37	chr4	122824023	122824023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccctggactttgagttaCccattcccatttctatatcc	4	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122824023	A	A	122824023	3	1	4	1	0	0	0	0	1	0	0	0	16704	507	18	3	334	3	TRPC3	4	122824023	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3797679	122824023	68330253	942	2966											
FAT4	79633	broad.mit.edu	37	chr4	126240586	126240586	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaagtcaccctttctgAgtcagaacctgtgaattctc	7	10	4	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126240586	T	T	126240586	3	4	4	1	0	0	0	0	1	0	0	0	5749	304	11	5	3022	5	FAT4	4	126240586	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	3416563	126240586	64913690	943	2967											
PCDH10	57575	broad.mit.edu	37	chr4	134071190	134071190	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacaggagcccccacgtagCgcacttttatttgtattttt	7	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134071190	G	G	134071190	1	3	4	0	1	0	0	0	0	0	0	0	11601	783	27	4		4	PCDH10	4	134071190	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	7830604	134071190	57083086	944	2968											
PCDH10	57575	broad.mit.edu	37	chr4	134072236	134072236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagactggaggtaagcgGcgagttggactatgaagaga	17	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134072236	T	T	134072236	3	4	4	1	0	0	0	0	1	0	0	0	11601	1203	42	3	943	3	PCDH10	4	134072236	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1046	134072236	57082040	945	2969											
PCDH10	57575	broad.mit.edu	37	chr4	134072870	134072870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctgagaacggctacttGtacgccctgcgctccttcga	9	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134072870	T	T	134072870	3	4	4	1	0	0	0	0	1	0	0	0	11601	1368	48	3	1577	3	PCDH10	4	134072870	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	634	134072870	57081406	946	2970											
RNF150	57484	broad.mit.edu	37	chr4	141868777	141868777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgctccacacacacaacCcaatcaaaagcaggcagcct	6	17	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141868777	A	A	141868777	1	1	4	0	1	0	0	0	0	0	0	0	13562	638	22	2		2	RNF150	4	141868777	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	7795907	141868777	49285499	947	2971											
INPP4B	8821	broad.mit.edu	37	chr4	143003332	143003333	+	Nonsense_Mutation	DNP	GG	TT	TT													acgaataccattcagtttgcGgcaaatctgtaacatatgta							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	143003333	TT	TT	143003332	4	4	4	1	0	0	0	0	0	1	0	0	7823	1116	39	1	288	1	INPP4B	4	143003332	Nonsense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	1134555	143003332	48150944	948	2972											
INPP4B	8821	broad.mit.edu	37	chr4	143114397	143114397	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactttgcaaacatttatctCcgtcatgctgtttgcattga	6	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143114397	A	A	143114397	1	1	4	0	1	0	0	0	0	0	0	0	7823	870	30	3		3	INPP4B	4	143114397	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	111065	143114397	48039879	949	2973											
INPP4B	8821	broad.mit.edu	37	chr4	143235915	143235915	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtaggacactggttcgaaCctgtggagaaaaacattttc	11	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143235915	T	T	143235915	3	4	4	1	0	0	0	0	1	0	0	0	7823	521	18	4	2477	4	INPP4B	4	143235915	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	121518	143235915	47918361	950	2974											
C4orf51	646603	broad.mit.edu	37	chr4	146617868	146617868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctttttttttctctcaCtttactgagatatgattgac	6	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146617868	A	A	146617868	1	1	4	0	1	0	0	0	0	0	0	0	2300	580	20	3		3	C4orf51	4	146617868	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3381953	146617868	44536408	951	2975											
TTC29	83894	broad.mit.edu	37	chr4	147830185	147830185	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccaccacttacctttcctCtcagcgtcctcagccctggt	5	19	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147830185	G	G	147830185	3	3	4	1	0	0	0	0	1	0	0	0	16822	912	32	4	1070	4	TTC29	4	147830185	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1212317	147830185	43324091	952	2976											
LRBA	987	broad.mit.edu	37	chr4	151344440	151344440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgtaggggtgtctccCttcaaacattcctaatcatc	6	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151344440	A	A	151344440	1	1	4	0	1	0	0	0	0	0	0	0	9018	696	24	2		2	LRBA	4	151344440	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3514255	151344440	39809836	953	2977											
PET112L	5188	broad.mit.edu	37	chr4	152629137	152629137	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggagcggcagctggcattCacctatggctttggccagga	14	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152629137	T	T	152629137	1	4	4	0	1	0	0	0	0	0	0	0	11828	841	29	4		4	PET112L	4	152629137	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1284697	152629137	38525139	954	2978											
DCHS2	54798	broad.mit.edu	37	chr4	155256115	155256115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcctttcaaactcagcaGgtgccagagttgtctggaaa	11	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155256115	T	T	155256115	3	4	4	1	0	0	0	0	1	0	0	0	4321	1000	35	2	7797	2	DCHS2	4	155256115	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2626978	155256115	35898161	955	2979											
FGB	2244	broad.mit.edu	37	chr4	155487754	155487754	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagctgtttcccagacCtcctcttcttcctttcagta	7	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155487754	T	T	155487754	2	4	4	1	0	0	0	0	0	0	0	1	5888	668	24	4		4	FGB	4	155487754	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	231639	155487754	35666522	956	2980											
LRAT	9227	broad.mit.edu	37	chr4	155665439	155665439	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcccggcccctgccggagTggcaccggcacctctccaag	12	19	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155665439	A	A	155665439	1	1	4	0	1	0	0	0	0	0	0	0	9017	1711	59	5		5	LRAT	4	155665439	5'UTR	SNP	T	TCGA-05-4382-01A-01D-1265-08	177685	155665439	35488837	957	2981											
GUCY1A3	2982	broad.mit.edu	37	chr4	156634168	156634168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacacaaagggtttattaCtgtatctacttccccttctt	4	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156634168	A	A	156634168	1	1	4	0	1	0	0	0	0	0	0	0	6959	580	20	3		3	GUCY1A3	4	156634168	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	968729	156634168	34520108	958	2982											
GUCY1A3	2982	broad.mit.edu	37	chr4	156634571	156634571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcagctgtggcaagggCaagttgtgcaagccaagaag	14	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156634571	A	A	156634571	3	1	4	1	0	0	0	0	1	0	0	0	6959	711	25	3	1441	3	GUCY1A3	4	156634571	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	403	156634571	34519705	959	2983											
GUCY1B3	2983	broad.mit.edu	37	chr4	156711063	156711063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgaaatagacatgaaGgtaacaaacagcaatggaga	11	6	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156711063	T	T	156711063	3	4	4	1	0	0	0	0	1	0	0	0	6960	1014	35	2	513	2	GUCY1B3	4	156711063	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	76492	156711063	34443213	960	2984											
GRIA2	2891	broad.mit.edu	37	chr4	158282139	158282139	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttgctcaccctgtctgaCaagtatgttttatcgtttca	6	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158282139	T	T	158282139	1	4	4	0	1	0	0	0	0	0	0	0	6834	493	17	4		4	GRIA2	4	158282139	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1571076	158282139	32872137	961	2985											
RXFP1	59350	broad.mit.edu	37	chr4	159566095	159566095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtactgtgggtatgcaCcacatgttcgcagctgtaaa	10	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159566095	A	A	159566095	3	1	4	1	0	0	0	0	1	0	0	0	13870	507	18	3	1208	3	RXFP1	4	159566095	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1283956	159566095	31588181	962	2986											
RAPGEF2	9693	broad.mit.edu	37	chr4	160251586	160251586	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacctataggacttttctttCtagcccaatggaagtgggca	10	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160251586	G	G	160251586	3	3	4	1	0	0	0	0	1	0	0	0	13152	913	32	4	946	4	RAPGEF2	4	160251586	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	685491	160251586	30902690	963	2987											
FSTL5	56884	broad.mit.edu	37	chr4	162307027	162307027	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatcaggtattgaccaaAcaagccactgtcctggattt	8	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162307027	G	G	162307027	3	3	4	1	0	0	0	0	1	0	0	0	6140	43	2	5	131	5	FSTL5	4	162307027	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2055441	162307027	28847249	964	2988											
FSTL5	56884	broad.mit.edu	37	chr4	162459314	162459314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgttgggtggttctatacAtacgggtctttctagcagag	13	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162459314	T	T	162459314	1	4	4	0	1	0	0	0	0	0	0	0	6140	232	8	5		5	FSTL5	4	162459314	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	152287	162459314	28694962	965	2989											
MARCH1	55016	broad.mit.edu	37	chr4	164507009	164507009	+	Frame_Shift_Del	DEL	A	-	-													tggaggcaggactggtggacAaagcgcagtgtcccagtgca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164507009	-	-	164507009	7	5	4	1	0	1	0	1	0	0	0	0	9390	127	5	0	566	0	MARCH1	4	164507009	Frame_Shift_Del	DEL	A	TCGA-05-4382-01A-01D-1265-08	2047695	164507009	26647267	966	2990											
MARCH1	55016	broad.mit.edu	37	chr4	165110215	165110215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacctgggtggcagaacCttcaatgcgtctcctctcac	8	15	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165110215	A	A	165110215	1	1	4	0	1	0	0	0	0	0	0	0	9390	696	24	2		2	MARCH1	4	165110215	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	603206	165110215	26044061	967	2991											
ANP32C	23520	broad.mit.edu	37	chr4	165118375	165118375	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccctcctcctcgtcatcCaggccctccacgtggtcctc	6	21	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118375	A	A	165118375	2	1	4	1	0	0	0	0	0	0	0	1	707	581	21	2		2	ANP32C	4	165118375	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	8160	165118375	26035901	968	2992											
TLL1	7092	broad.mit.edu	37	chr4	166976235	166976235	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttctgttgcagattgaaaGacatgacaattgtgcttatg	9	5	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166976235	C	C	166976235	3	2	4	1	0	0	0	0	1	0	0	0	16068	942	33	4	1582	4	TLL1	4	166976235	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1857860	166976235	24178041	969	2993											
TLL1	7092	broad.mit.edu	37	chr4	166999115	166999115	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccagtcccaactggccagAcaagtacccaagcaggaaag	9	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166999115	T	T	166999115	3	4	4	1	0	0	0	0	1	0	0	0	16068	275	10	5	2445	5	TLL1	4	166999115	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	22880	166999115	24155161	970	2994											
PALLD	23022	broad.mit.edu	37	chr4	169432821	169432821	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatagccgactccgaaacaGaagattttgactcggaaaag	9	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169432821	A	A	169432821	3	1	4	1	0	0	0	0	1	0	0	0	11501	943	33	4	168	4	PALLD	4	169432821	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2433706	169432821	21721455	971	2995											
GALNTL6	442117	broad.mit.edu	37	chr4	172735780	172735780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgactttgttgttcacgGtggctttaattttcctgcct	9	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172735780	T	T	172735780	3	4	4	1	0	0	0	0	1	0	0	0	6287	1261	44	3	51	3	GALNTL6	4	172735780	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3302959	172735780	18418496	972	2996											
WDR17	116966	broad.mit.edu	37	chr4	177067216	177067216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccaccagctcagatcaaCcattgaaagtatttagtggg	9	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177067216	A	A	177067216	3	1	4	1	0	0	0	0	1	0	0	0	17404	507	18	3	1718	3	WDR17	4	177067216	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4331436	177067216	14087060	973	2997											
ASB5	140458	broad.mit.edu	37	chr4	177142614	177142614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttacctttactggcggcCtcatgcgttggggatggaag	14	8	1	0	rs140659869		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177142614	A	A	177142614	3	1	4	1	0	0	0	0	1	0	0	0	1030	680	24	2	483	2	ASB5	4	177142614	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	75398	177142614	14011662	974	2998											
VEGFC	7424	broad.mit.edu	37	chr4	177608675	177608675	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggaatccatctgttgagtCtagacaaatagtcagagaat	9	6	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608675	A	A	177608675	5	1	4	1	0	0	0	0	0	0	1	0	17279	927	32	3	459	3	VEGFC	4	177608675	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	466061	177608675	13545601	975	2999											
NEIL3	55247	broad.mit.edu	37	chr4	178272480	178272480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataatcatttctaaaatatcCagacaagaacaaggcaataa	4	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178272480	T	T	178272480	1	4	4	0	1	0	0	0	0	0	0	0	10415	609	21	4		4	NEIL3	4	178272480	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	663805	178272480	12881796	976	3000											
ODZ3	55714	broad.mit.edu	37	chr4	183713386	183713386	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatctgcttttgcatctccCgttcacaaacactgagtaac	5	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183713386	T	T	183713386	1	4	4	0	1	0	0	0	0	0	0	0	10931	667	23	4		4	ODZ3	4	183713386	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5440906	183713386	7440890	977	3001											
ODZ3	55714	broad.mit.edu	37	chr4	183714264	183714264	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtttacctcaatgaaaagAtaatgtggcggtacaactac	8	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183714264	T	T	183714264	3	4	4	1	0	0	0	0	1	0	0	0	10931	333	12	5	6537	5	ODZ3	4	183714264	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	878	183714264	7440012	978	3002											
WWC2	80014	broad.mit.edu	37	chr4	184181991	184181991	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccctctgcagatctgaagGagccagtagagattgtgatt	11	8	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184181991	T	T	184181991	1	4	4	0	1	0	0	0	0	0	0	0	17539	1189	41	3		3	WWC2	4	184181991	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	467727	184181991	6972285	979	3003											
AHRR	57491	broad.mit.edu	37	chr5	427840	427840	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgaattccagccgctgtcGcgcccttgagttctgtgtcc	10	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	427840	A	A	427840	1	1	4	0	1	0	0	0	0	0	0	0	417	1102	38	4		4	AHRR	5	427840	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08		427840	180487420	980	3004											
ZDHHC11	79844	broad.mit.edu	37	chr5	825153	825153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatcattcccatgtgagCagcaccattggacacagagt	8	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	825153	A	A	825153	1	1	4	0	1	0	0	0	0	0	0	0	17727	725	25	3		3	ZDHHC11	5	825153	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	397313	825153	180090107	981	3005											
NKD2	85409	broad.mit.edu	37	chr5	1037896	1037896	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcctgcactcccagggccTcacactctgacctgtgtccg	10	17	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1037896	G	G	1037896	1	3	4	0	1	0	0	0	0	0	0	0	10537	1566	54	5		5	NKD2	5	1037896	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	212743	1037896	179877364	982	3006											
SLC6A18	348932	broad.mit.edu	37	chr5	1225792	1225792	+	Intron	DEL	G	-	-													ctggggcagacccctaagcaGgggaggccgtctccaccctg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1225792	-	-	1225792	6	5	4	0	1	1	0	1	0	0	0	0	14795	1015	35	0		0	SLC6A18	5	1225792	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	187896	1225792	179689468	983	3007											
SLC6A18	348932	broad.mit.edu	37	chr5	1242871	1242871	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttcccagagcagagcatcTccagggacgactacccagcc	9	16	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1242871	C	C	1242871	3	2	4	1	0	0	0	0	1	0	0	0	14795	1551	54	5	1054	5	SLC6A18	5	1242871	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	17079	1242871	179672389	984	3008											
CLPTM1L	81037	broad.mit.edu	37	chr5	1325076	1325076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctaccaggcgaggagaGgacccagaggacggggatcc	16	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1325076	T	T	1325076	1	4	4	0	1	0	0	0	0	0	0	0	3587	1015	35	2		2	CLPTM1L	5	1325076	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	82205	1325076	179590184	985	3009											
LPCAT1	79888	broad.mit.edu	37	chr5	1481216	1481216	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgcagccagggggaagGgaggagggtgctagagctcc	20	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1481216	A	A	1481216	1	1	4	0	1	0	0	0	0	0	0	0	8997	1247	43	4		4	LPCAT1	5	1481216	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	156140	1481216	179434044	986	3010											
IRX1	79192	broad.mit.edu	37	chr5	3601189	3601189	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacttttgcgggggggaggGgggaggagttggggagggag	25	2	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3601189	T	T	3601189	1	4	4	0	1	0	0	0	0	0	0	0	7913	1247	43	2		2	IRX1	5	3601189	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	2119973	3601189	177314071	987	3011											
SEMA5A	9037	broad.mit.edu	37	chr5	9337872	9337872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggtcaaatgttaactgCgagaaatccacagcattctt	8	10	2	1	rs111523371	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9337872	A	A	9337872	2	1	4	1	0	0	0	0	0	0	0	1	14150	755	27	3		3	SEMA5A	5	9337872	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	5736683	9337872	171577388	988	3012											
MARCH6	10299	broad.mit.edu	37	chr5	10423937	10423937	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaactgtaattgaacagGtaagcaaaatcagttttcag	8	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10423937	T	T	10423937	5	4	4	1	0	0	0	0	0	0	1	0	9397	1275	44	3	2464	3	MARCH6	5	10423937	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	1086065	10423937	170491323	989	3013											
CTNND2	1501	broad.mit.edu	37	chr5	11117512	11117512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagctattgttgagtcccGtgggagtctttattctcaaa	10	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11117512	T	T	11117512	1	4	4	0	1	0	0	0	0	0	0	0	4054	1160	40	3		3	CTNND2	5	11117512	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	693575	11117512	169797748	990	3014											
CTNND2	1501	broad.mit.edu	37	chr5	11397016	11397016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaccaaagggcattttcCctcaagttgagggacacacc	9	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11397016	A	A	11397016	1	1	4	0	1	0	0	0	0	0	0	0	4054	638	22	2		2	CTNND2	5	11397016	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	279504	11397016	169518244	991	3015											
FAM105A	54491	broad.mit.edu	37	chr5	14607340	14607340	+	Intron	DEL	A	-	-													cagagtgagattccatctcgAaaaaaaaaaagataaggttg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14607340	-	-	14607340	6	5	4	0	1	1	0	1	0	0	0	0	5433	261	9	0		0	FAM105A	5	14607340	Intron	DEL	A	TCGA-05-4382-01A-01D-1265-08	3210324	14607340	166307920	992	3016											
FAM105B	90268	broad.mit.edu	37	chr5	14687520	14687520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttgcagaattaattctGgaaacaaagttaggttttat	8	3	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14687520	T	T	14687520	1	4	4	0	1	0	0	0	0	0	0	0	5434	1363	47	2		2	FAM105B	5	14687520	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	80180	14687520	166227740	993	3017											
FBXL7	23194	broad.mit.edu	37	chr5	15936789	15936789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacctggtgatctactgcGcctccatcaaggagctgagc	11	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15936789	T	T	15936789	3	4	4	1	0	0	0	0	1	0	0	0	5781	1087	38	3	984	3	FBXL7	5	15936789	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1249269	15936789	164978471	994	3018											
FBXL7	23194	broad.mit.edu	37	chr5	15936818	15936818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagctgagcgtcagcgaCtgccgcttcgtcagcgactt	13	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15936818	A	A	15936818	3	1	4	1	0	0	0	0	1	0	0	0	5781	564	20	3	1013	3	FBXL7	5	15936818	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	29	15936818	164978442	995	3019											
MYO10	4651	broad.mit.edu	37	chr5	16761732	16761732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaacttccctgaaagagCcacaaaaagaaatcattcca	5	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16761732	A	A	16761732	1	1	4	0	1	0	0	0	0	0	0	0	10156	754	26	3		3	MYO10	5	16761732	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	824914	16761732	164153528	996	3020											
CDH12	1010	broad.mit.edu	37	chr5	21756059	21756059	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcttgaatcaggaaaatgGattcttattttttttatttc	5	5	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21756059	T	T	21756059	1	4	4	0	1	0	0	0	0	0	0	0	3128	1189	41	3		3	CDH12	5	21756059	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4994327	21756059	159159201	997	3021											
CDH12	1010	broad.mit.edu	37	chr5	21765193	21765193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtatattgactttgctgGtcaataaagggttacctgtt	9	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21765193	T	T	21765193	3	4	4	1	0	0	0	0	1	0	0	0	3128	1261	44	3	991	3	CDH12	5	21765193	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	9134	21765193	159150067	998	3022											
CDH12	1010	broad.mit.edu	37	chr5	21854814	21854814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagagaaataaggttgtccCtgaagaatgctgtaaacgac	10	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21854814	A	A	21854814	3	1	4	1	0	0	0	0	1	0	0	0	3128	680	24	2	1808	2	CDH12	5	21854814	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	89621	21854814	159060446	999	3023											
CDH12	1010	broad.mit.edu	37	chr5	21883980	21883980	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttacagatgcccttaatgcTacaagagctgctgttgaagg	11	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883980	A	A	21883980	1	1	4	0	1	0	0	0	0	0	0	0	3128	1537	53	5		5	CDH12	5	21883980	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	29166	21883980	159031280	1000	3024											
CDH10	1008	broad.mit.edu	37	chr5	24491830	24491830	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggtcagtgtgcctgtgctGctctgaattgggtaatcatt	12	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24491830	C	C	24491830	3	2	4	1	0	0	0	0	1	0	0	0	3126	1310	46	4	643	4	CDH10	5	24491830	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2607850	24491830	156423430	1001	3025											
CDH10	1008	broad.mit.edu	37	chr5	24509959	24509959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataaatcatcaaattagaGtgagggaaattggatgatat	9	2	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24509959	T	T	24509959	1	4	4	0	1	0	0	0	0	0	0	0	3126	1044	36	3		3	CDH10	5	24509959	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	18129	24509959	156405301	1002	3026											
CDH9	1007	broad.mit.edu	37	chr5	26906170	26906170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacccatgtctttggcctGtataacaacctggtactgct	8	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26906170	T	T	26906170	3	4	4	1	0	0	0	0	1	0	0	0	3147	1386	48	3	1692	3	CDH9	5	26906170	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2396211	26906170	154009090	1003	3027											
PDZD2	23037	broad.mit.edu	37	chr5	31847888	31847888	+	Intron	SNP	C	T	T													gtgaatggaggcttgtctatCccttgcagtaccagacgatt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31847888	T	T	31847888	1	4	4	0	1	0	0	0	0	0	0	0	11795	870	30	4		4	PDZD2	5	31847888	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4941718	31847888	149067372	1004	3028	9	2									
PDZD2	23037	broad.mit.edu	37	chr5	31847890	31847890	+	Intron	SNP	C	T	T													gaatggaggcttgtctatccCttgcagtaccagacgattcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31847890	T	T	31847890	1	4	4	0	1	0	0	0	0	0	0	0	11795	696	24	4		4	PDZD2	5	31847890	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2	31847890	149067370	1005	3029	9	2									
PDZD2	23037	broad.mit.edu	37	chr5	32089569	32089569	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcaggttccacatggctgtCctctctgaacccgacagagg	11	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32089569	A	A	32089569	2	1	4	1	0	0	0	0	0	0	0	1	11795	842	30	3		3	PDZD2	5	32089569	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	241679	32089569	148825691	1006	3030											
ZFR	51663	broad.mit.edu	37	chr5	32355983	32355983	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaacgttggctcatttgCggtaatggatccatgcctag	10	8	1	0	rs139087778	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32355983	G	G	32355983	2	3	4	1	0	0	0	0	0	0	0	1	17785	755	27	4		4	ZFR	5	32355983	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	266414	32355983	148559277	1007	3031											
TARS	6897	broad.mit.edu	37	chr5	33453500	33453500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagcttctcaagtttgagGatgaggaagctcaggcagta	14	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33453500	T	T	33453500	3	4	4	1	0	0	0	0	1	0	0	0	15678	1174	41	3	450	3	TARS	5	33453500	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1097517	33453500	147461760	1008	3032											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576991	33576991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggactagggctgctgattGctggagtgcttgtgctcata	14	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33576991	T	T	33576991	3	4	4	1	0	0	0	0	1	0	0	0	257	1319	46	3	1668	3	ADAMTS12	5	33576991	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	123491	33576991	147338269	1009	3033											
RXFP3	51289	broad.mit.edu	37	chr5	33937208	33937208	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctctatcaacctcttcgtCaccaacctggcgctgacgga	7	16	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33937208	A	A	33937208	2	1	4	1	0	0	0	0	0	0	0	1	13872	813	29	3		3	RXFP3	5	33937208	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	360217	33937208	146978052	1010	3034											
AGXT2	64902	broad.mit.edu	37	chr5	35040923	35040923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttggatttaaaatctgaGtatctcaataatgagttttc	7	4	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35040923	T	T	35040923	1	4	4	0	1	0	0	0	0	0	0	0	405	1044	36	3		3	AGXT2	5	35040923	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1103715	35040923	145874337	1011	3035											
SPEF2	79925	broad.mit.edu	37	chr5	35774235	35774235	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgtctatgagaacatacaGcaaagaggttgaaaagcaca	9	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35774235	C	C	35774235	1	2	4	0	1	0	0	0	0	0	0	0	15153	986	34	4		4	SPEF2	5	35774235	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	733312	35774235	145141025	1012	3036											
SPEF2	79925	broad.mit.edu	37	chr5	35807451	35807451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcatggaagagaaagaaGctgtactctgccaggccagg	14	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35807451	T	T	35807451	1	4	4	0	1	0	0	0	0	0	0	0	15153	986	34	3		3	SPEF2	5	35807451	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	33216	35807451	145107809	1013	3037											
UGT3A1	133688	broad.mit.edu	37	chr5	35991213	35991213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgcggggatccgggaCgcgcctgtctgggaattctc	17	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35991213	A	A	35991213	1	1	4	0	1	0	0	0	0	0	0	0	17089	551	19	3		3	UGT3A1	5	35991213	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	183762	35991213	144924047	1014	3038											
C5orf33	133686	broad.mit.edu	37	chr5	36226716	36226716	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccactaataatatatatAacaggggtatgttttctgag	7	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36226716	T	T	36226716	1	4	4	0	1	0	0	0	0	0	0	0	2315	377	13	5		5	C5orf33	5	36226716	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	235503	36226716	144688544	1015	3039											
EGFLAM	133584	broad.mit.edu	37	chr5	38338726	38338726	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagcctgctgccactgTgagtgcaattacaacctttg	9	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38338726	A	A	38338726	1	1	4	0	1	0	0	0	0	0	0	0	5006	1711	59	5		5	EGFLAM	5	38338726	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2112010	38338726	142576534	1016	3040											
EGFLAM	133584	broad.mit.edu	37	chr5	38407277	38407277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggagaggaagaagtgGtgatgaattggcaccattga	17	3	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38407277	T	T	38407277	1	4	4	0	1	0	0	0	0	0	0	0	5006	1276	44	3		3	EGFLAM	5	38407277	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	68551	38407277	142507983	1017	3041											
OSMR	9180	broad.mit.edu	37	chr5	38922040	38922040	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatgggtgttaggagttcAgatgttacaagaatatgttc	12	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38922040	G	G	38922040	1	3	4	0	1	0	0	0	0	0	0	0	11386	203	7	5		5	OSMR	5	38922040	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	514763	38922040	141993220	1018	3042											
PRKAA1	5562	broad.mit.edu	37	chr5	40775031	40775031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttatatctaattcctaccTccttcgtggagcctgttttt	5	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40775031	C	C	40775031	1	2	4	0	1	0	0	0	0	0	0	0	12599	1565	54	5		5	PRKAA1	5	40775031	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1852991	40775031	140140229	1019	3043											
C7	730	broad.mit.edu	37	chr5	40979846	40979846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccttccttggatgtatgtGctcaagatgagagaagcaaa	11	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40979846	T	T	40979846	3	4	4	1	0	0	0	0	1	0	0	0	2400	1319	46	3	2251	3	C7	5	40979846	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	204815	40979846	139935414	1020	3044											
HEATR7B2	133558	broad.mit.edu	37	chr5	41038867	41038867	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggccatgaagagacaggaCttgggatatgatatcttgat	12	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41038867	T	T	41038867	3	4	4	1	0	0	0	0	1	0	0	0	7102	565	20	4	2660	4	HEATR7B2	5	41038867	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	59021	41038867	139876393	1021	3045											
HEATR7B2	133558	broad.mit.edu	37	chr5	41058151	41058151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgattcagttcctttagGgtatggctcttacctgagtg	10	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41058151	T	T	41058151	1	4	4	0	1	0	0	0	0	0	0	0	7102	1247	43	2		2	HEATR7B2	5	41058151	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	19284	41058151	139857109	1022	3046											
C6	729	broad.mit.edu	37	chr5	41181563	41181563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtacactgaaagagctcccCccctgacttgagaatgagcc	10	13	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41181563	A	A	41181563	2	1	4	1	0	0	0	0	0	0	0	1	2338	610	22	2		2	C6	5	41181563	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	123412	41181563	139733697	1023	3047											
GHR	2690	broad.mit.edu	37	chr5	42465576	42465576	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttggaccctcctcttttaCctcttcaacttcattctcct	2	15	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42465576	T	T	42465576	1	4	4	0	1	0	0	0	0	0	0	0	6435	522	18	4		4	GHR	5	42465576	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1284013	42465576	138449684	1024	3048											
GHR	2690	broad.mit.edu	37	chr5	42467044	42467044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgagttggaaatgaaaGctgcaccacacttcttatat	10	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42467044	T	T	42467044	1	4	4	0	1	0	0	0	0	0	0	0	6435	986	34	3		3	GHR	5	42467044	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1468	42467044	138448216	1025	3049											
GHR	2690	broad.mit.edu	37	chr5	42468123	42468123	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagcctctcttaactcagGtccttaaggatcagctttct	6	12	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42468123	T	T	42468123	1	4	4	0	1	0	0	0	0	0	0	0	6435	1276	44	3		3	GHR	5	42468123	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1079	42468123	138447137	1026	3050											
ZNF131	7690	broad.mit.edu	37	chr5	43174846	43174846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggattcagcacaagtgactGtggaacaagtccatccagat	10	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43174846	T	T	43174846	3	4	4	1	0	0	0	0	1	0	0	0	17847	1377	48	3	1407	3	ZNF131	5	43174846	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	706723	43174846	137740414	1027	3051											
PELO	53918	broad.mit.edu	37	chr5	52097598	52097598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctcagccagttgactgGggtagctgccattctccgct	11	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52097598	T	T	52097598	3	4	4	1	0	0	0	0	1	0	0	0	11818	1232	43	2	1088	2	PELO	5	52097598	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	8922752	52097598	128817662	1028	3052											
ESM1	11082	broad.mit.edu	37	chr5	54280877	54280877	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggtttcagttgctacttGgagctatccttcagtctcta	8	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54280877	A	A	54280877	1	1	4	0	1	0	0	0	0	0	0	0	5294	1363	47	4		4	ESM1	5	54280877	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2183279	54280877	126634383	1029	3053											
GZMA	3001	broad.mit.edu	37	chr5	54401522	54401522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattaataaaaagagtaggcCgggcacagtggcttacacct	10	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54401522	A	A	54401522	1	1	4	0	1	0	0	0	0	0	0	0	6980	667	23	1		1	GZMA	5	54401522	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	120645	54401522	126513738	1030	3054											
GPX8	493869	broad.mit.edu	37	chr5	54456891	54456891	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attacttagggctgaaggaaCtgcacaaagagtttggacca	11	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54456891	T	T	54456891	2	4	4	1	0	0	0	0	0	0	0	1	6812	564	20	4		4	GPX8	5	54456891	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	55369	54456891	126458369	1031	3055											
DHX29	54505	broad.mit.edu	37	chr5	54585879	54585879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaacagaggctgtatggccCatgaagtccacagtatttac	10	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54585879	A	A	54585879	1	1	4	0	1	0	0	0	0	0	0	0	4543	609	21	2		2	DHX29	5	54585879	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	128988	54585879	126329381	1032	3056											
ANKRD55	79722	broad.mit.edu	37	chr5	55489118	55489118	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactggggagatgcatggaAattataaatgtagaagcagg	14	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55489118	G	G	55489118	1	3	4	0	1	0	0	0	0	0	0	0	681	29	1	5		5	ANKRD55	5	55489118	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	903239	55489118	125426142	1033	3057											
SGTB	54557	broad.mit.edu	37	chr5	64976515	64976515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttaacttctgttctgCtattttcagatttgacttat	4	9	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64976515	A	A	64976515	3	1	4	1	0	0	0	0	1	0	0	0	14339	797	28	3	348	3	SGTB	5	64976515	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	9487397	64976515	115938745	1034	3058											
MAST4	375449	broad.mit.edu	37	chr5	66406071	66406071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattatttattgttaactgGgaaagcagttaccatcagaa	7	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66406071	T	T	66406071	1	4	4	0	1	0	0	0	0	0	0	0	9419	1247	43	2		2	MAST4	5	66406071	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1429556	66406071	114509189	1035	3059											
SLC30A5	64924	broad.mit.edu	37	chr5	68399055	68399055	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtacttaatgaatgatttaAgtatgccacagaacaatttt	7	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68399055	T	T	68399055	1	4	4	0	1	0	0	0	0	0	0	0	14672	87	3	5		5	SLC30A5	5	68399055	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1992984	68399055	112516205	1036	3060											
UTP15	84135	broad.mit.edu	37	chr5	72874777	72874777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcaaacttgataatttaGtgcaagacagtgattttttt	6	4	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72874777	T	T	72874777	1	4	4	0	1	0	0	0	0	0	0	0	17224	1044	36	3		3	UTP15	5	72874777	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4475722	72874777	108040483	1037	3061											
POLK	51426	broad.mit.edu	37	chr5	74848200	74848200	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagttttaaatttaatcttCtgtttcctgagtatgtgctc	6	6	2	1	rs5744605		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74848200	A	A	74848200	1	1	4	0	1	0	0	0	0	0	0	0	12299	928	32	3		3	POLK	5	74848200	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1973423	74848200	106067060	1038	3062											
SV2C	22987	broad.mit.edu	37	chr5	75576774	75576774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacagggtctgagcctgccAggatgacaggatcctggtga	15	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75576774	T	T	75576774	1	4	4	0	1	0	0	0	0	0	0	0	15537	203	7	5		5	SV2C	5	75576774	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	728574	75576774	105338486	1039	3063											
IQGAP2	10788	broad.mit.edu	37	chr5	75954354	75954354	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggaccaaagtgatttggaTttccaggaggaactagaggt	13	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75954354	A	A	75954354	3	1	4	1	0	0	0	0	1	0	0	0	7885	1490	52	5	2473	5	IQGAP2	5	75954354	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	377580	75954354	104960906	1040	3064											
CRHBP	1393	broad.mit.edu	37	chr5	76259265	76259265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcctttagctgatctctGctacccctttcatggcccgg	9	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76259265	T	T	76259265	3	4	4	1	0	0	0	0	1	0	0	0	3902	1319	46	3	813	3	CRHBP	5	76259265	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	304911	76259265	104655995	1041	3065											
AGGF1	55109	broad.mit.edu	37	chr5	76355663	76355663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatatatcctgataggtgGcctatttatttgtttattta	7	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76355663	T	T	76355663	1	4	4	0	1	0	0	0	0	0	0	0	382	1218	42	3		3	AGGF1	5	76355663	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	96398	76355663	104559597	1042	3066											
PDE8B	8622	broad.mit.edu	37	chr5	76587071	76587071	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagacttaaaaaggcctacGcacagatccgagttgggaac	10	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76587071	A	A	76587071	1	1	4	0	1	0	0	0	0	0	0	0	11748	1102	38	4		4	PDE8B	5	76587071	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	231408	76587071	104328189	1043	3067											
PDE8B	8622	broad.mit.edu	37	chr5	76627130	76627130	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaagccactcttggagCtaacgctgtgtggcctcatt	11	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76627130	T	T	76627130	1	4	4	0	1	0	0	0	0	0	0	0	11748	812	28	4		4	PDE8B	5	76627130	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	40059	76627130	104288130	1044	3068											
DMGDH	29958	broad.mit.edu	37	chr5	78324471	78324471	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgactgcttcttcttcaatcCatctgcgttttagtcatgaa	6	10	5	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78324471	G	G	78324471	3	3	4	1	0	0	0	0	1	0	0	0	4621	595	21	4	803	4	DMGDH	5	78324471	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1697341	78324471	102590789	1045	3069											
DMGDH	29958	broad.mit.edu	37	chr5	78347268	78347268	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgccatagttagagaaTaaggatcaatgtgaccatct	9	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78347268	C	C	78347268	3	2	4	1	0	0	0	0	1	0	0	0	4621	1406	49	5	2061	5	DMGDH	5	78347268	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	22797	78347268	102567992	1046	3070											
DMGDH	29958	broad.mit.edu	37	chr5	78350088	78350088	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgttgcatgccagccagtCcgagtcatttgatatttaaa	8	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78350088	A	A	78350088	2	1	4	1	0	0	0	0	0	0	0	1	4621	842	30	3		3	DMGDH	5	78350088	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2820	78350088	102565172	1047	3071											
BHMT	635	broad.mit.edu	37	chr5	78423815	78423815	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttagagcaaggtaagcatCtttttactaacccaaactaa	7	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78423815	G	G	78423815	1	3	4	0	1	0	0	0	0	0	0	0	1431	928	32	4		4	BHMT	5	78423815	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	73727	78423815	102491445	1048	3072											
JMY	133746	broad.mit.edu	37	chr5	78573766	78573766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagaatacagagagcatgGtggagcttctggacttgtat	12	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78573766	T	T	78573766	3	4	4	1	0	0	0	0	1	0	0	0	8027	1261	44	3	1072	3	JMY	5	78573766	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	149951	78573766	102341494	1049	3073											
SERINC5	256987	broad.mit.edu	37	chr5	79454738	79454738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctgtacaggtcttgacCaaagtcaggcacacagattg	9	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79454738	A	A	79454738	3	1	4	1	0	0	0	0	1	0	0	0	14196	594	21	2	536	2	SERINC5	5	79454738	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	880972	79454738	101460522	1050	3074											
ACOT12	134526	broad.mit.edu	37	chr5	80655832	80655832	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacatgatcttgttcagttAgaagtgtgactggttttaaa	9	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80655832	G	G	80655832	3	3	4	1	0	0	0	0	1	0	0	0	150	420	15	5	1325	5	ACOT12	5	80655832	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1201094	80655832	100259428	1051	3075											
ATG10	83734	broad.mit.edu	37	chr5	81354221	81354221	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacatttagtttttcactgAtcagtttggaacttatggga	9	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81354221	T	T	81354221	1	4	4	0	1	0	0	0	0	0	0	0	1093	348	12	5		5	ATG10	5	81354221	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	698389	81354221	99561039	1052	3076											
VCAN	1462	broad.mit.edu	37	chr5	82816053	82816053	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaatatctgtctactaCaccttttccatcacagcatc	4	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82816053	T	T	82816053	3	4	4	1	0	0	0	0	1	0	0	0	17265	478	17	4	1950	4	VCAN	5	82816053	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1461832	82816053	98099207	1053	3077											
VCAN	1462	broad.mit.edu	37	chr5	82816423	82816423	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacagaagtaagagatatGgaggaagactttacagcaac	10	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82816423	A	A	82816423	3	1	4	1	0	0	0	0	1	0	0	0	17265	1348	47	4	2320	4	VCAN	5	82816423	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	370	82816423	98098837	1054	3078											
VCAN	1462	broad.mit.edu	37	chr5	82832966	82832966	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccctgacataattgaaataGacctataccacagtgaagaa	6	9	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82832966	C	C	82832966	3	2	4	1	0	0	0	0	1	0	0	0	17265	942	33	4	4170	4	VCAN	5	82832966	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	16543	82832966	98082294	1055	3079											
VCAN	1462	broad.mit.edu	37	chr5	82837427	82837427	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggattcttttaaggaaattCatgtaaatattgaagcgact	8	4	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82837427	G	G	82837427	3	3	4	1	0	0	0	0	1	0	0	0	17265	826	29	4	8631	4	VCAN	5	82837427	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4461	82837427	98077833	1056	3080											
HAPLN1	1404	broad.mit.edu	37	chr5	82937365	82937365	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atacagcttatgctttttatCtgggaaacccacgaagcgca	8	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82937365	A	A	82937365	3	1	4	1	0	0	0	0	1	0	0	0	7020	913	32	3	53	3	HAPLN1	5	82937365	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	99938	82937365	97977895	1057	3081											
HAPLN1	1404	broad.mit.edu	37	chr5	82937398	82937398	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcgcactgcagcctcagTaggactgcagcgccttcttg	12	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82937398	C	C	82937398	3	2	4	1	0	0	0	0	1	0	0	0	7020	1638	57	5	86	5	HAPLN1	5	82937398	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	33	82937398	97977862	1058	3082											
HAPLN1	1404	broad.mit.edu	37	chr5	82948412	82948412	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcctcccttcagaaacactCtaccctggtagcctccatag	6	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82948412	T	T	82948412	3	4	4	1	0	0	0	0	1	0	0	0	7020	913	32	4	744	4	HAPLN1	5	82948412	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	11014	82948412	97966848	1059	3083											
RASA1	5921	broad.mit.edu	37	chr5	86672977	86672977	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattgcaaaataagttattCtgttttccctccttaaaaat	3	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86672977	G	G	86672977	1	3	4	0	1	0	0	0	0	0	0	0	13168	928	32	4		4	RASA1	5	86672977	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3724565	86672977	94242283	1060	3084											
TMEM161B	153396	broad.mit.edu	37	chr5	87494826	87494826	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccgtgcttattcgcccCgcttctttcttcatctgatc	5	15	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87494826	T	T	87494826	2	4	4	1	0	0	0	0	0	0	0	1	16200	639	23	4		4	TMEM161B	5	87494826	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	821849	87494826	93420434	1061	3085											
GPR98	84059	broad.mit.edu	37	chr5	90012412	90012412	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgcagtattgtacattgttCgggaacctgcacaaggattg	11	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90012412	A	A	90012412	2	1	4	1	0	0	0	0	0	0	0	1	6787	875	31	3		3	GPR98	5	90012412	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2517586	90012412	90902848	1062	3086											
C5orf36	285600	broad.mit.edu	37	chr5	93929839	93929839	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccacacttgaatattttcCtgaatatctgctaaaggtaa	7	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93929839	G	G	93929839	1	3	4	0	1	0	0	0	0	0	0	0	2318	696	24	4		4	C5orf36	5	93929839	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3917427	93929839	86985421	1063	3087											
MCTP1	79772	broad.mit.edu	37	chr5	94248658	94248658	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattttctgtgtaggtctgaTaggcgtaaactttgggtctg	13	5	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94248658	A	A	94248658	2	1	4	1	0	0	0	0	0	0	0	1	9493	1393	49	5		5	MCTP1	5	94248658	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	318819	94248658	86666602	1064	3088											
PCSK1	5122	broad.mit.edu	37	chr5	95748019	95748019	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtctgtgtaaagcatctTacctgtttgacaccatattc	8	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95748019	C	C	95748019	1	2	4	0	1	0	0	0	0	0	0	0	11694	1769	61	5		5	PCSK1	5	95748019	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1499361	95748019	85167241	1065	3089											
PAM	5066	broad.mit.edu	37	chr5	102361025	102361025	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttattcggtggaaaaaatcAagggcctttggaggcaagta	12	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102361025	C	C	102361025	2	2	4	1	0	0	0	0	0	0	0	1	11506	117	5	5		5	PAM	5	102361025	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	6613006	102361025	78554235	1066	3090											
STARD4	134429	broad.mit.edu	37	chr5	110842999	110842999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagatagaagatataccCcaaatataagtaattgaact	5	6	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110842999	A	A	110842999	1	1	4	0	1	0	0	0	0	0	0	0	15377	638	22	2		2	STARD4	5	110842999	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	8481974	110842999	70072261	1067	3091											
EPB41L4A	64097	broad.mit.edu	37	chr5	111595539	111595539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcactgacacaggagtccCataagcccaaaacatagaat	6	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111595539	A	A	111595539	1	1	4	0	1	0	0	0	0	0	0	0	5197	609	21	2		2	EPB41L4A	5	111595539	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	752540	111595539	69319721	1068	3092											
APC	324	broad.mit.edu	37	chr5	112175975	112175975	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaactattgattctgaaaagGacctattagatgattcagat	7	5	2	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112175975	A	A	112175975	3	1	4	1	0	0	0	0	1	0	0	0	765	1174	41	4	4742	4	APC	5	112175975	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	580436	112175975	68739285	1069	3093											
MCC	4163	broad.mit.edu	37	chr5	112478886	112478886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggtttagcagaaggggCagagtaaaagccgaatggag	18	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112478886	A	A	112478886	1	1	4	0	1	0	0	0	0	0	0	0	9466	725	25	3		3	MCC	5	112478886	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	302911	112478886	68436374	1070	3094											
AQPEP	206338	broad.mit.edu	37	chr5	115336645	115336645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccccagaggatcacccaCtgcaggactactacataagt	8	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115336645	A	A	115336645	1	1	4	0	1	0	0	0	0	0	0	0	836	580	20	3		3	AQPEP	5	115336645	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2857759	115336645	65578615	1071	3095											
SEMA6A	57556	broad.mit.edu	37	chr5	115813644	115813644	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcaggaagaggatgaccatGagctacctaggactgtttcc	12	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115813644	C	C	115813644	1	2	4	0	1	0	0	0	0	0	0	0	14152	1305	45	4		4	SEMA6A	5	115813644	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	476999	115813644	65101616	1072	3096											
CEP120	153241	broad.mit.edu	37	chr5	122734967	122734967	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggggtcaagtccagccaGgatggcaggtactttacaga	13	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122734967	C	C	122734967	3	2	4	1	0	0	0	0	1	0	0	0	3276	991	35	4	2549	4	CEP120	5	122734967	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6921323	122734967	58180293	1073	3097											
MEGF10	84466	broad.mit.edu	37	chr5	126674906	126674906	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaactggtttaaatgcacgCggcacaggtaatagaagctc	10	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126674906	A	A	126674906	2	1	4	1	0	0	0	0	0	0	0	1	9553	759	27	3		3	MEGF10	5	126674906	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	3939939	126674906	54240354	1074	3098											
SLC12A2	6558	broad.mit.edu	37	chr5	127522368	127522368	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagaatggtacttcagtgcCtagtgtagtaactgaaatct	9	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127522368	G	G	127522368	1	3	4	0	1	0	0	0	0	0	0	0	14496	696	24	4		4	SLC12A2	5	127522368	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	847462	127522368	53392892	1075	3099											
FBN2	2201	broad.mit.edu	37	chr5	127616079	127616079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacaagctatcttctaatGggttatatcttatttaacac	4	7	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127616079	T	T	127616079	1	4	4	0	1	0	0	0	0	0	0	0	5760	1363	47	2		2	FBN2	5	127616079	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	93711	127616079	53299181	1076	3100											
SLC27A6	28965	broad.mit.edu	37	chr5	128302064	128302064	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcatctatgagggagaCatctacacctatcaggatgt	8	9	5	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128302064	T	T	128302064	2	4	4	1	0	0	0	0	0	0	0	1	14644	477	17	4		4	SLC27A6	5	128302064	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	685985	128302064	52613196	1077	3101											
RAPGEF6	51735	broad.mit.edu	37	chr5	131080176	131080176	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttccttctccctcagCcccaattatccagtttgata	4	14	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131080176	A	A	131080176	1	1	4	0	1	0	0	0	0	0	0	0	13156	754	26	3		3	RAPGEF6	5	131080176	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2778112	131080176	49835084	1078	3102											
ACSL6	23305	broad.mit.edu	37	chr5	131296201	131296201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctttcaggagacagcccCaagataccaaccttatttgt	6	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131296201	A	A	131296201	1	1	4	0	1	0	0	0	0	0	0	0	181	609	21	2		2	ACSL6	5	131296201	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	216025	131296201	49619059	1079	3103											
IL3	3562	broad.mit.edu	37	chr5	131398035	131398035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgaaggccaaacctggagGcattcaacagggctgtcaag	12	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131398035	T	T	131398035	3	4	4	1	0	0	0	0	1	0	0	0	7759	1203	42	3	245	3	IL3	5	131398035	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	101834	131398035	49517225	1080	3104											
FSTL4	23105	broad.mit.edu	37	chr5	132939708	132939708	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaagaaatgacaaatgctGagaataaaacattatgagat	8	3	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132939708	A	A	132939708	1	1	4	0	1	0	0	0	0	0	0	0	6139	1305	45	4		4	FSTL4	5	132939708	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1541673	132939708	47975552	1081	3105											
PITX1	5307	broad.mit.edu	37	chr5	134366998	134366998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtgaggttggtccacaCggcgatctcctccctcatgc	11	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134366998	T	T	134366998	3	4	4	1	0	0	0	0	1	0	0	0	12049	536	19	4	582	4	PITX1	5	134366998	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1427290	134366998	46548262	1082	3106											
EGR1	1958	broad.mit.edu	37	chr5	137802346	137802346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactacctcgggagtcaatGgtagccggcccggtctcttg	12	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137802346	T	T	137802346	1	4	4	0	1	0	0	0	0	0	0	0	5011	1363	47	2		2	EGR1	5	137802346	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3435348	137802346	43112914	1083	3107											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139889656	139889656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatacgccactttggctgGcatccaatggaggtcatttt	10	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139889656	T	T	139889656	3	4	4	1	0	0	0	0	1	0	0	0	629	1203	42	3	4080	3	ANKHD1-EIF4EBP3	5	139889656	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2087310	139889656	41025604	1084	3108											
IK	3550	broad.mit.edu	37	chr5	140041211	140041211	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcctgcaacagggtaacAagaaggggcccttaggccgt	13	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140041211	G	G	140041211	3	3	4	1	0	0	0	0	1	0	0	0	7678	131	5	5	1486	5	IK	5	140041211	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	151555	140041211	40874049	1085	3109											
PCDHA2	56146	broad.mit.edu	37	chr5	140175321	140175321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttagagaatacggcaaatGggaccttagtggttaagtta	12	4	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140175321	T	T	140175321	3	4	4	1	0	0	0	0	1	0	0	0	11618	1348	47	2	774	2	PCDHA2	5	140175321	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	134110	140175321	40739939	1086	3110											
PCDHA2	56146	broad.mit.edu	37	chr5	140177024	140177024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagttatttagattcataGttcttcatttattttatatc	3	5	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140177024	T	T	140177024	1	4	4	0	1	0	0	0	0	0	0	0	11618	1024	36	3		3	PCDHA2	5	140177024	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1703	140177024	40738236	1087	3111											
PCDHA3	56145	broad.mit.edu	37	chr5	140182121	140182121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgtgtccgtggaggtggccGacgtgaacgacaatgcgccg	17	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140182121	T	T	140182121	3	4	4	1	0	0	0	0	1	0	0	0	11619	1058	37	3	1341	3	PCDHA3	5	140182121	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	5097	140182121	40733139	1088	3112											
PCDHA8	56140	broad.mit.edu	37	chr5	140222067	140222067	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaacgggcaggtgacctgCtccctgatgccccatgtccc	11	17	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140222067	A	A	140222067	4	1	4	1	0	0	0	0	0	1	0	0	11624	805	28	3	1163	3	PCDHA8	5	140222067	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	39946	140222067	40693193	1089	3113											
PCDHA10	56139	broad.mit.edu	37	chr5	140235754	140235754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacgaggaggccagacacGgcaccttcgtgggccgcatc	13	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140235754	T	T	140235754	3	4	4	1	0	0	0	0	1	0	0	0	11614	1116	39	1	123	1	PCDHA10	5	140235754	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	13687	140235754	40679506	1090	3114											
PCDHA10	56139	broad.mit.edu	37	chr5	140237564	140237564	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagactgactcgccacgccAgcgcctactggtgctggtga	13	13	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140237564	T	T	140237564	3	4	4	1	0	0	0	0	1	0	0	0	11614	188	7	5	1933	5	PCDHA10	5	140237564	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1810	140237564	40677696	1091	3115											
PCDHA1	56147	broad.mit.edu	37	chr5	140242421	140242421	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgagagcgcgcgacgcgggCatgccgcctctgagcagcaa	16	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140242421	G	G	140242421	1	3	4	0	1	0	0	0	0	0	0	0	11613	725	25	4		4	PCDHA1	5	140242421	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4857	140242421	40672839	1092	3116											
PCDHAC2	56134	broad.mit.edu	37	chr5	140347671	140347671	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctacaacatcacggtgacAgccacagatgggggaatacc	11	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140347671	T	T	140347671	2	4	4	1	0	0	0	0	0	0	0	1	11627	175	7	5		5	PCDHAC2	5	140347671	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	105250	140347671	40567589	1093	3117											
PCDHB12	56124	broad.mit.edu	37	chr5	140590170	140590170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcccttcgtgctgtaccCgctgcagaacggctccgcgc	11	18	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140590170	A	A	140590170	3	1	4	1	0	0	0	0	1	0	0	0	11631	652	23	1	1693	1	PCDHB12	5	140590170	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	242499	140590170	40325090	1094	3118											
PCDHB15	56121	broad.mit.edu	37	chr5	140627195	140627195	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccggcccaagcccaggcCgactcgcttaccgtctacct	9	20	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140627195	A	A	140627195	2	1	4	1	0	0	0	0	0	0	0	1	11634	639	23	1		1	PCDHB15	5	140627195	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	37025	140627195	40288065	1095	3119											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720200	140720200	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaagcctgttcgtgctggaCcagaacgacaacgcgcccga	11	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140720200	G	G	140720200	3	3	4	1	0	0	0	0	1	0	0	0	11648	506	18	4	1664	4	PCDHGA2	5	140720200	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	93005	140720200	40195060	1096	3120											
PCDHGA4	56111	broad.mit.edu	37	chr5	140737049	140737049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgaggtctccctcaccgCggactcgcggaagagtcacc	11	17	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140737049	A	A	140737049	3	1	4	1	0	0	0	0	1	0	0	0	11650	768	27	3	2284	3	PCDHGA4	5	140737049	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	16849	140737049	40178211	1097	3121											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740131	140740131	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagattaatttaaaaattggCgaatccactaagccaggtac	7	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140740131	G	G	140740131	2	3	4	1	0	0	0	0	0	0	0	1	11657	755	27	4		4	PCDHGB2	5	140740131	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	3082	140740131	40175129	1098	3122											
PCDHGA6	56109	broad.mit.edu	37	chr5	140753939	140753939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccgcgaggagctctgtGctcagagcccgcggtgtctg	15	12	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140753939	T	T	140753939	3	4	4	1	0	0	0	0	1	0	0	0	11652	1319	46	3	291	3	PCDHGA6	5	140753939	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	13808	140753939	40161321	1099	3123											
RELL2	285613	broad.mit.edu	37	chr5	141018055	141018055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccctgaccaacagacCcaggccaaatcctgatcaaa	6	16	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141018055	A	A	141018055	1	1	4	0	1	0	0	0	0	0	0	0	13327	638	22	2		2	RELL2	5	141018055	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	264116	141018055	39897205	1100	3124											
ARAP3	64411	broad.mit.edu	37	chr5	141041471	141041471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgtctctgcccccttcCcacctccccctgagccaagt	7	19	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141041471	A	A	141041471	1	1	4	0	1	0	0	0	0	0	0	0	842	638	22	2		2	ARAP3	5	141041471	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	23416	141041471	39873789	1101	3125											
ARAP3	64411	broad.mit.edu	37	chr5	141059632	141059632	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgaagactgctcagaggagGaagtggggagaggaggaggc	20	5	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141059632	A	A	141059632	3	1	4	1	0	0	0	0	1	0	0	0	842	1174	41	4	4340	4	ARAP3	5	141059632	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	18161	141059632	39855628	1102	3126											
ARHGAP26	23092	broad.mit.edu	37	chr5	142273824	142273824	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagacagccaagtggacctgGtccggcagcatttctatgaa	11	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142273824	C	C	142273824	3	2	4	1	0	0	0	0	1	0	0	0	877	1261	44	4	530	4	ARHGAP26	5	142273824	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1214192	142273824	38641436	1103	3127											
LARS	51520	broad.mit.edu	37	chr5	145499985	145499985	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgattatggaatcacagtTatctccttgcctgatttcaa	6	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145499985	A	A	145499985	3	1	4	1	0	0	0	0	1	0	0	0	8706	1754	61	5	264	5	LARS	5	145499985	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	3226161	145499985	35415275	1104	3128											
LARS	51520	broad.mit.edu	37	chr5	145508725	145508725	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaccttcagtgagattagaCaatataactattttacggtt	6	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145508725	G	G	145508725	1	3	4	0	1	0	0	0	0	0	0	0	8706	493	17	4		4	LARS	5	145508725	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	8740	145508725	35406535	1105	3129											
TCERG1	10915	broad.mit.edu	37	chr5	145883576	145883576	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtctgacatggtatacGttaatcttttactttttttc	5	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145883576	C	C	145883576	1	2	4	0	1	0	0	0	0	0	0	0	15807	1160	40	4		4	TCERG1	5	145883576	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	374851	145883576	35031684	1106	3130											
PPP2R2B	5521	broad.mit.edu	37	chr5	146257616	146257616	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgttgttgattttgcgggTatcaatgtcctcctccattg	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146257616	C	C	146257616	3	2	4	1	0	0	0	0	1	0	0	0	12486	1638	57	5	1389	5	PPP2R2B	5	146257616	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	374040	146257616	34657644	1107	3131											
SH3TC2	79628	broad.mit.edu	37	chr5	148406410	148406410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatagcttcccagcagcatGggacatacttactctttaga	7	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148406410	T	T	148406410	1	4	4	0	1	0	0	0	0	0	0	0	14375	1363	47	2		2	SH3TC2	5	148406410	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2148794	148406410	32508850	1108	3132											
AFAP1L1	134265	broad.mit.edu	37	chr5	148685935	148685935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagacagcagctaccctgCaaccagggtgaacggcgagc	13	14	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148685935	A	A	148685935	3	1	4	1	0	0	0	0	1	0	0	0	354	710	25	3	525	3	AFAP1L1	5	148685935	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	279525	148685935	32229325	1109	3133											
PDE6A	5145	broad.mit.edu	37	chr5	149264109	149264109	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggatggcatgctcatgctGtcgacgattgaggttttgaa	14	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149264109	A	A	149264109	4	1	4	1	0	0	0	0	0	1	0	0	11739	1386	48	4	650	4	PDE6A	5	149264109	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	578174	149264109	31651151	1110	3134											
PDGFRB	5159	broad.mit.edu	37	chr5	149504984	149504984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttgagtccccacactgcCacatgaggcctctcaggact	8	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149504984	A	A	149504984	1	1	4	0	1	0	0	0	0	0	0	0	11756	609	21	2		2	PDGFRB	5	149504984	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	240875	149504984	31410276	1111	3135											
GLRA1	2741	broad.mit.edu	37	chr5	151304011	151304011	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtagcctccgtactctttccCcccatttccatcagagcgat	6	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151304011	G	G	151304011	1	3	4	0	1	0	0	0	0	0	0	0	6518	638	22	4		4	GLRA1	5	151304011	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1799027	151304011	29611249	1112	3136											
GRIA1	2890	broad.mit.edu	37	chr5	152870273	152870273	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaacgctgcagtttaagtGttcggattccaagggaaaca	11	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152870273	A	A	152870273	1	1	4	0	1	0	0	0	0	0	0	0	6833	1392	48	4		4	GRIA1	5	152870273	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	1566262	152870273	28044987	1113	3137											
GRIA1	2890	broad.mit.edu	37	chr5	153182038	153182038	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaaatcccgtagtgaatcCaagcggatgaaggtggcatc	11	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153182038	T	T	153182038	2	4	4	1	0	0	0	0	0	0	0	1	6833	581	21	4		4	GRIA1	5	153182038	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	311765	153182038	27733222	1114	3138											
LARP1	23367	broad.mit.edu	37	chr5	154169793	154169793	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaacttgcaggttgctaGgtggagtggggacggtgatg	20	4	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154169793	C	C	154169793	1	2	4	0	1	0	0	0	0	0	0	0	8700	1015	35	4		4	LARP1	5	154169793	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	987755	154169793	26745467	1115	3139											
TIMD4	91937	broad.mit.edu	37	chr5	156381395	156381395	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaccactgaatctctcctTccgcaggcatgaggcccttc	7	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156381395	A	A	156381395	1	1	4	0	1	0	0	0	0	0	0	0	16026	1798	62	5		5	TIMD4	5	156381395	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2211602	156381395	24533865	1116	3140											
ADAM19	8728	broad.mit.edu	37	chr5	156899204	156899204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttattaggaagtcatgaaGctgggactggaacccgggtt	14	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156899204	T	T	156899204	1	4	4	0	1	0	0	0	0	0	0	0	240	986	34	3		3	ADAM19	5	156899204	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	517809	156899204	24016056	1117	3141											
ADAM19	8728	broad.mit.edu	37	chr5	156991421	156991421	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcagttctcgcccctcagCcattaccctgagctcagctt	7	16	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156991421	G	G	156991421	3	3	4	1	0	0	0	0	1	0	0	0	240	739	26	4	2629	4	ADAM19	5	156991421	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	92217	156991421	23923839	1118	3142											
CLINT1	9685	broad.mit.edu	37	chr5	157214823	157214823	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgctctggttcatcatcGgagtatttccaagaggggcc	11	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157214823	A	A	157214823	3	1	4	1	0	0	0	0	1	0	0	0	3563	1116	39	4	172	4	CLINT1	5	157214823	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	223402	157214823	23700437	1119	3143											
CLINT1	9685	broad.mit.edu	37	chr5	157233056	157233056	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttgtcgtcacagtctcctCttcatctttgaattcacctt	4	13	6	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157233056	A	A	157233056	4	1	4	1	0	0	0	0	0	1	0	0	3563	922	32	3	1141	3	CLINT1	5	157233056	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	18233	157233056	23682204	1120	3144											
TTC1	7265	broad.mit.edu	37	chr5	159437824	159437824	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaactagatgaagaatacCtaatagaactggaaaaaaac	7	6	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159437824	G	G	159437824	3	3	4	1	0	0	0	0	1	0	0	0	16804	680	24	4	291	4	TTC1	5	159437824	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2204768	159437824	21477436	1121	3145											
GABRB2	2561	broad.mit.edu	37	chr5	160763691	160763691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaatctacaatagagaaCtgtggaagttcaattttcgt	8	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160763691	A	A	160763691	3	1	4	1	0	0	0	0	1	0	0	0	6227	564	20	3	931	3	GABRB2	5	160763691	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1325867	160763691	20151569	1122	3146											
GABRA6	2559	broad.mit.edu	37	chr5	161117146	161117146	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttgtcaagatttatattcAactgcattctttttgcagac	6	7	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161117146	T	T	161117146	1	4	4	0	1	0	0	0	0	0	0	0	6225	145	5	5		5	GABRA6	5	161117146	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	353455	161117146	19798114	1123	3147											
ODZ2	57451	broad.mit.edu	37	chr5	167181955	167181955	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctattatgcttttccttccCagctggagaaggcctcagct	8	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167181955	G	G	167181955	1	3	4	0	1	0	0	0	0	0	0	0	10930	609	21	4		4	ODZ2	5	167181955	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	6064809	167181955	13733305	1124	3148											
RARS	5917	broad.mit.edu	37	chr5	167921539	167921539	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacagtatctgatattttttCtcttctatccattaggtttt	5	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167921539	T	T	167921539	1	4	4	0	1	0	0	0	0	0	0	0	13166	928	32	4		4	RARS	5	167921539	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	739584	167921539	12993721	1125	3149											
SLIT3	6586	broad.mit.edu	37	chr5	168134924	168134924	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgcccctctctagggcCagggctgaaggaggagcctg	16	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168134924	A	A	168134924	1	1	4	0	1	0	0	0	0	0	0	0	14855	609	21	2		2	SLIT3	5	168134924	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	213385	168134924	12780336	1126	3150											
SLIT3	6586	broad.mit.edu	37	chr5	168150089	168150089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaagtatcacacatacCtgccatccacccactcatct	2	18	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168150089	A	A	168150089	1	1	4	0	1	0	0	0	0	0	0	0	14855	696	24	2		2	SLIT3	5	168150089	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	15165	168150089	12765171	1127	3151											
SLIT3	6586	broad.mit.edu	37	chr5	168199770	168199770	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaaagcggggcccagcCccgtaacctgattacctgag	12	13	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168199770	A	A	168199770	1	1	4	0	1	0	0	0	0	0	0	0	14855	638	22	2		2	SLIT3	5	168199770	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	49681	168199770	12715490	1128	3152											
SLIT3	6586	broad.mit.edu	37	chr5	168201430	168201430	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcactaatcctggtaattaCctgcggggcaagggttgcac	11	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168201430	T	T	168201430	1	4	4	0	1	0	0	0	0	0	0	0	14855	522	18	4		4	SLIT3	5	168201430	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1660	168201430	12713830	1129	3153											
CCDC99	54908	broad.mit.edu	37	chr5	169015427	169015427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaaagaacatggagGcagatataatcacaaatctt	7	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169015427	C	C	169015427	3	2	4	1	0	0	0	0	1	0	0	0	2904	1203	42	4	9	4	CCDC99	5	169015427	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	813997	169015427	11899833	1130	3154											
DOCK2	1794	broad.mit.edu	37	chr5	169145853	169145853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaattcctctgggatacaaCagtatttttactgtaggaga	9	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169145853	A	A	169145853	1	1	4	0	1	0	0	0	0	0	0	0	4727	493	17	3		3	DOCK2	5	169145853	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	130426	169145853	11769407	1131	3155											
DOCK2	1794	broad.mit.edu	37	chr5	169445819	169445819	+	Intron	DEL	C	-	-													gttaagtgttcaaaacggtgCctggctcatggtaaacaact							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169445819	-	-	169445819	6	5	4	0	1	1	0	1	0	0	0	0	4727	754	26	0		0	DOCK2	5	169445819	Intron	DEL	C	TCGA-05-4382-01A-01D-1265-08	299966	169445819	11469441	1132	3156											
FOXI1	2299	broad.mit.edu	37	chr5	169535124	169535124	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaaatttccgcaggaaaAggaagagaaaatcagatgtt	11	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169535124	G	G	169535124	3	3	4	1	0	0	0	0	1	0	0	0	6069	63	3	5	652	5	FOXI1	5	169535124	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	89305	169535124	11380136	1133	3157											
KCNIP1	30820	broad.mit.edu	37	chr5	170145847	170145847	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcccagaccaacttcacCaagagggagctgcaggtcct	12	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170145847	T	T	170145847	2	4	4	1	0	0	0	0	0	0	0	1	8109	581	21	4		4	KCNIP1	5	170145847	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	610723	170145847	10769413	1134	3158											
STK10	6793	broad.mit.edu	37	chr5	171479898	171479898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcatggcacagagcagagCccgagactgagcccaccagc	13	14	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171479898	A	A	171479898	1	1	4	0	1	0	0	0	0	0	0	0	15404	754	26	3		3	STK10	5	171479898	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1334051	171479898	9435362	1135	3159											
STK10	6793	broad.mit.edu	37	chr5	171509466	171509466	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacttgctgcttttgctgaCgctccaggttctctaattcc	7	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171509466	T	T	171509466	3	4	4	1	0	0	0	0	1	0	0	0	15404	536	19	4	1085	4	STK10	5	171509466	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	29568	171509466	9405794	1136	3160											
C5orf41	153222	broad.mit.edu	37	chr5	172512764	172512764	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgtgtgagtgtagaacactCcacatacctgatggccttca	9	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172512764	G	G	172512764	1	3	4	0	1	0	0	0	0	0	0	0	2323	870	30	4		4	C5orf41	5	172512764	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1003298	172512764	8402496	1137	3161											
C5orf25	375484	broad.mit.edu	37	chr5	175716848	175716848	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagcctctctggcaaagcGgtgatggaagggcacgtgga	16	10	1	1	rs138928707	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175716848	C	C	175716848	2	2	4	1	0	0	0	0	0	0	0	1	2311	1131	39	4		4	C5orf25	5	175716848	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	3204084	175716848	5198412	1138	3162											
GPRIN1	114787	broad.mit.edu	37	chr5	176024932	176024932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttgtttctgctttgccaCcagactgcggctgtgctttc	10	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176024932	A	A	176024932	3	1	4	1	0	0	0	0	1	0	0	0	6795	507	18	3	1126	3	GPRIN1	5	176024932	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	308084	176024932	4890328	1139	3163											
GPRIN1	114787	broad.mit.edu	37	chr5	176026853	176026853	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgccctcatgaccacgCctgcacccaaggctgctgtc	8	18	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176026853	A	A	176026853	1	1	4	0	1	0	0	0	0	0	0	0	6795	754	26	3		3	GPRIN1	5	176026853	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	1921	176026853	4888407	1140	3164											
HK3	3101	broad.mit.edu	37	chr5	176315748	176315748	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttccaggaggatgctgccTtggctcagcagggcagggga	17	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176315748	A	A	176315748	3	1	4	1	0	0	0	0	1	0	0	0	7259	1606	56	5	1783	5	HK3	5	176315748	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	288895	176315748	4599512	1141	3165											
HK3	3101	broad.mit.edu	37	chr5	176317466	176317466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttttaacctatacaatgGgaatggtagcaacatgtacc	8	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176317466	T	T	176317466	1	4	4	0	1	0	0	0	0	0	0	0	7259	1247	43	2		2	HK3	5	176317466	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1718	176317466	4597794	1142	3166											
FGFR4	2264	broad.mit.edu	37	chr5	176519788	176519788	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctcacggtgctgccaggtGagcacctgaagggccaggag	17	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176519788	T	T	176519788	1	4	4	0	1	0	0	0	0	0	0	0	5925	1305	45	3		3	FGFR4	5	176519788	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	202322	176519788	4395472	1143	3167											
FGFR4	2264	broad.mit.edu	37	chr5	176519884	176519884	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtctctgttggcctgtggGgtctggcctggggggcagtg	19	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176519884	A	A	176519884	1	1	4	0	1	0	0	0	0	0	0	0	5925	1247	43	4		4	FGFR4	5	176519884	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	96	176519884	4395376	1144	3168											
FAM153A	285596	broad.mit.edu	37	chr5	177167641	177167641	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaggctagaatgcagtGccatgatcaaggcttaggtg	13	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177167641	A	A	177167641	1	1	4	0	1	0	0	0	0	0	0	0	5506	1334	46	4		4	FAM153A	5	177167641	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	647757	177167641	3747619	1145	3169											
PROP1	5626	broad.mit.edu	37	chr5	177421183	177421183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcggggtactggttcctcCcaaaggctgactccagctgt	12	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177421183	T	T	177421183	3	4	4	1	0	0	0	0	1	0	0	0	12663	623	22	4	422	4	PROP1	5	177421183	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	253542	177421183	3494077	1146	3170											
COL23A1	91522	broad.mit.edu	37	chr5	177679623	177679623	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgagagtgaagccggtcAgtgtcatgggttaggcaggg	19	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177679623	T	T	177679623	1	4	4	0	1	0	0	0	0	0	0	0	3714	203	7	5		5	COL23A1	5	177679623	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	258440	177679623	3235637	1147	3171											
ADAMTS2	9509	broad.mit.edu	37	chr5	178634575	178634575	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccgtggaactgcaccacaGagtcatccacgcccagcagg	10	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178634575	A	A	178634575	3	1	4	1	0	0	0	0	1	0	0	0	265	942	33	4	2956	4	ADAMTS2	5	178634575	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	954952	178634575	2280685	1148	3172											
RUFY1	80230	broad.mit.edu	37	chr5	179003935	179003935	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttttggtttgttcaattGatttccacttcatagagctg	7	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179003935	C	C	179003935	1	2	4	0	1	0	0	0	0	0	0	0	13849	1305	45	4		4	RUFY1	5	179003935	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	369360	179003935	1911325	1149	3173											
RASGEF1C	255426	broad.mit.edu	37	chr5	179546204	179546204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggacatggggctgccCaggccttcagagagcccggc	18	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179546204	A	A	179546204	1	1	4	0	1	0	0	0	0	0	0	0	13179	609	21	2		2	RASGEF1C	5	179546204	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	542269	179546204	1369056	1150	3174											
MAPK9	5601	broad.mit.edu	37	chr5	179696296	179696296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatttttatgattgacaCattttaagaggacaagttca	6	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179696296	A	A	179696296	3	1	4	1	0	0	0	0	1	0	0	0	9379	478	17	3	1200	3	MAPK9	5	179696296	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	150092	179696296	1218964	1151	3175											
MGAT1	4245	broad.mit.edu	37	chr5	180219359	180219359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcctccaccaccacggCcgcggggaagcgaaactgcc	11	17	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180219359	A	A	180219359	3	1	4	1	0	0	0	0	1	0	0	0	9635	739	26	3	728	3	MGAT1	5	180219359	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	523063	180219359	695901	1152	3176											
BTNL3	10917	broad.mit.edu	37	chr5	180432208	180432208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagaaggtacatggctGgtgggatagtgggactggcc	18	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180432208	T	T	180432208	1	4	4	0	1	0	0	0	0	0	0	0	1576	1363	47	2		2	BTNL3	5	180432208	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	212849	180432208	483052	1153	3177											
MYLK4	340156	broad.mit.edu	37	chr6	2749382	2749382	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgattacctcattatgtccAgatcttgaatcctggtcccc	6	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2749382	G	G	2749382	2	3	4	1	0	0	0	0	0	0	0	1	10153	175	7	5		5	MYLK4	6	2749382	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08		2749382	168365685	1154	3178											
SERPINB6	5269	broad.mit.edu	37	chr6	2953084	2953084	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaagaccttgatcgagcctGagggctgcagcttcagactt	11	10	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2953084	A	A	2953084	1	1	4	0	1	0	0	0	0	0	0	0	14218	1305	45	4		4	SERPINB6	6	2953084	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	203702	2953084	168161983	1155	3179											
RIPK1	8737	broad.mit.edu	37	chr6	3085386	3085386	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccattccactctatggaatGaggcagctgtaccagaggct	11	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3085386	A	A	3085386	1	1	4	0	1	0	0	0	0	0	0	0	13491	1305	45	4		4	RIPK1	6	3085386	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	132302	3085386	168029681	1156	3180											
CDYL	9425	broad.mit.edu	37	chr6	4703736	4703736	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaccaggccgcactggcagGaagatcaagttccccctgcc	11	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4703736	T	T	4703736	1	4	4	0	1	0	0	0	0	0	0	0	3215	1189	41	3		3	CDYL	6	4703736	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	1618350	4703736	166411331	1157	3181											
RREB1	6239	broad.mit.edu	37	chr6	7247517	7247517	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagccgggcacctctcctagGagctcccctgaagcggcgct	13	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7247517	T	T	7247517	1	4	4	0	1	0	0	0	0	0	0	0	13790	1189	41	3		3	RREB1	6	7247517	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2543781	7247517	163867550	1158	3182											
CAGE1	285782	broad.mit.edu	37	chr6	7342415	7342415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctggacagttgggcccCctgcccatatctgacatcac	9	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7342415	A	A	7342415	1	1	4	0	1	0	0	0	0	0	0	0	2598	638	22	2		2	CAGE1	6	7342415	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	94898	7342415	163772652	1159	3183											
CAGE1	285782	broad.mit.edu	37	chr6	7355420	7355420	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttttatgactacaagttGaagcttaattatctgactat	5	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7355420	T	T	7355420	1	4	4	0	1	0	0	0	0	0	0	0	2598	1305	45	3		3	CAGE1	6	7355420	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	13005	7355420	163759647	1160	3184											
BMP6	654	broad.mit.edu	37	chr6	7727594	7727594	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtccgcgcccctcttcAtgctggatctgtacaacgcc	9	15	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7727594	T	T	7727594	3	4	4	1	0	0	0	0	1	0	0	0	1470	217	8	5	408	5	BMP6	6	7727594	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	372174	7727594	163387473	1161	3185											
TXNDC5	81567	broad.mit.edu	37	chr6	7899820	7899820	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacactcaccactggctcctCgttcagtgtctgcagcatcc	8	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7899820	T	T	7899820	3	4	4	1	0	0	0	0	1	0	0	0	16925	893	31	4	822	4	TXNDC5	6	7899820	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	172226	7899820	163215247	1162	3186											
GCNT2	2651	broad.mit.edu	37	chr6	10556854	10556854	+	Intron	DEL	C	-	-													tggaaaaacaaactaatgatCcatgagaagtcttcttgcaa					rs55930620		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10556854	-	-	10556854	6	5	4	0	1	1	0	1	0	0	0	0	6363	845	30	0		0	GCNT2	6	10556854	Intron	DEL	C	TCGA-05-4382-01A-01D-1265-08	2657034	10556854	160558213	1163	3187											
GCNT2	2651	broad.mit.edu	37	chr6	10586723	10586723	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatgcaggcatttccagactCcaggctgacctgaactgtct	9	12	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10586723	T	T	10586723	1	4	4	0	1	0	0	0	0	0	0	0	6363	842	30	4		4	GCNT2	6	10586723	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	29869	10586723	160528344	1164	3188											
SYCP2L	221711	broad.mit.edu	37	chr6	10906329	10906329	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtattagaatattaaatatTggacactgggggttttatga	10	2	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10906329	A	A	10906329	1	1	4	0	1	0	0	0	0	0	0	0	15552	1827	63	5		5	SYCP2L	6	10906329	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	319606	10906329	160208738	1165	3189											
CDKAL1	54901	broad.mit.edu	37	chr6	21065227	21065227	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgtcagggaaatagaAtaattatggcttatagtcaa	8	3	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21065227	T	T	21065227	1	4	4	0	1	0	0	0	0	0	0	0	3182	116	4	5		5	CDKAL1	6	21065227	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	10158898	21065227	150049840	1166	3190											
TDP2	51567	broad.mit.edu	37	chr6	24666674	24666674	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgtccgcccagctccacGgcaggtcccaggacgcgcag	12	18	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24666674	T	T	24666674	1	4	4	0	1	0	0	0	0	0	0	0	15851	1131	39	1		1	TDP2	6	24666674	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3601447	24666674	146448393	1167	3191											
SLC17A4	10050	broad.mit.edu	37	chr6	25777118	25777118	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgaccatgaccttcttggTgctgtcttctgccatcagca	8	13	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25777118	A	A	25777118	3	1	4	1	0	0	0	0	1	0	0	0	14532	1696	59	5	1233	5	SLC17A4	6	25777118	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1110444	25777118	145337949	1168	3192											
SLC17A1	6568	broad.mit.edu	37	chr6	25819932	25819932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggctgctccctgaactgctCgacatacaacgacccaagct	9	15	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25819932	A	A	25819932	3	1	4	1	0	0	0	0	1	0	0	0	14529	884	31	3	1020	3	SLC17A1	6	25819932	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	42814	25819932	145295135	1169	3193											
HIST1H3A	8350	broad.mit.edu	37	chr6	26021048	26021048	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttgaggacactaacctgTgcgccatccacgccaagcgc	9	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26021048	A	A	26021048	3	1	4	1	0	0	0	0	1	0	0	0	7222	1696	59	5	333	5	HIST1H3A	6	26021048	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	201116	26021048	145094019	1170	3194											
HIST1H3B	8358	broad.mit.edu	37	chr6	26032069	26032069	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgaagtcttgggcgatttCtcgcaccaggcgctggaacg	13	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26032069	T	T	26032069	3	4	4	1	0	0	0	0	1	0	0	0	7223	922	32	4	194	4	HIST1H3B	6	26032069	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	11021	26032069	145082998	1171	3195											
HIST1H2AC	8334	broad.mit.edu	37	chr6	26124779	26124779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaccattgctcagggcGgcgtccttcctaacatccag	12	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26124779	T	T	26124779	3	4	4	1	0	0	0	0	1	0	0	0	7197	1116	39	1	321	1	HIST1H2AC	6	26124779	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	92710	26124779	144990288	1172	3196											
HIST1H2BF	8343	broad.mit.edu	37	chr6	26199826	26199826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcctgctccaaaaaagGgctccaaaaaggcggtgacc	10	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26199826	T	T	26199826	3	4	4	1	0	0	0	0	1	0	0	0	7212	1232	43	2	42	2	HIST1H2BF	6	26199826	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	75047	26199826	144915241	1173	3197											
HIST1H2AE	3012	broad.mit.edu	37	chr6	26216315	26216315	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagtagaaacgagatttaAccacgttagccaaactggtc	8	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26216315	G	G	26216315	1	3	4	0	1	0	0	0	0	0	0	0	7199	58	2	5		5	HIST1H2AE	6	26216315	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	16489	26216315	144898752	1174	3198											
HIST1H3G	8355	broad.mit.edu	37	chr6	26271483	26271483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgcagagccacggtgccggGacggtagcgatgaggtttct	17	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26271483	T	T	26271483	3	4	4	1	0	0	0	0	1	0	0	0	7228	1174	41	3	284	3	HIST1H3G	6	26271483	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	55168	26271483	144843584	1175	3199											
BTN2A2	10385	broad.mit.edu	37	chr6	26388252	26388253	+	Missense_Mutation	DNP	AA	TT	TT													cctttccaggccttgggtctAagcccctcattgaaatcaag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26388253	TT	TT	26388252	3	4	4	1	0	0	0	0	1	0	0	0	1571	363	13	5	464	5	BTN2A2	6	26388252	Missense_Mutation	DNP	AA	TCGA-05-4382-01A-01D-1265-08	116769	26388252	144726815	1176	3200											
BTN1A1	696	broad.mit.edu	37	chr6	26501952	26501952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccgaaagaaggtttcgCcggccgtgctggtgcatagg	16	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26501952	A	A	26501952	3	1	4	1	0	0	0	0	1	0	0	0	1569	739	26	3	220	3	BTN1A1	6	26501952	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	113700	26501952	144613115	1177	3201											
BTN1A1	696	broad.mit.edu	37	chr6	26507075	26507075	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaaaggtaaaccatagaatCcacaagggctacgtgtcagg	10	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26507075	A	A	26507075	1	1	4	0	1	0	0	0	0	0	0	0	1569	870	30	3		3	BTN1A1	6	26507075	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5123	26507075	144607992	1178	3202											
TRIM27	5987	broad.mit.edu	37	chr6	28889580	28889580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctacaagttctgggtgaCatgctggacaagtttaaggg	12	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28889580	A	A	28889580	1	1	4	0	1	0	0	0	0	0	0	0	16625	493	17	3		3	TRIM27	6	28889580	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2382505	28889580	142225487	1179	3203											
OR2J3	442186	broad.mit.edu	37	chr6	29079941	29079941	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtcaatctctggggcccgGaaaagaccatctcttatgct	10	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29079941	T	T	29079941	4	4	4	1	0	0	0	0	0	1	0	0	11098	1175	41	3	276	3	OR2J3	6	29079941	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	190361	29079941	142035126	1180	3204											
OR12D3	81797	broad.mit.edu	37	chr6	29343071	29343071	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacattctccattgctctGggaagcaaatttaacaataa	7	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29343071	T	T	29343071	1	4	4	0	1	0	0	0	0	0	0	0	11026	1363	47	2		2	OR12D3	6	29343071	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	263130	29343071	141771996	1181	3205											
OR12D2	26529	broad.mit.edu	37	chr6	29364690	29364690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctacctggatatctgttacTctacggtgacactgccaaaa	7	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29364690	C	C	29364690	3	2	4	1	0	0	0	0	1	0	0	0	11025	1551	54	5	216	5	OR12D2	6	29364690	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	21619	29364690	141750377	1182	3206											
GABBR1	2550	broad.mit.edu	37	chr6	29599290	29599290	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatctcatagtccactgGcaggaagttgatagccttca	8	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599290	A	A	29599290	3	1	4	1	0	0	0	0	1	0	0	0	6215	1203	42	4	2942	4	GABBR1	6	29599290	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	234600	29599290	141515777	1183	3207											
MOG	4340	broad.mit.edu	37	chr6	29633942	29633943	+	Missense_Mutation	DNP	GG	TT	TT													ctttcagatcctttctactgGgtgagccctggagtgctggt					rs143168440		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	29633943	TT	TT	29633942	3	4	4	1	0	0	0	0	1	0	0	0	9787	1241	43	2	544	2	MOG	6	29633942	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	34652	29633942	141481125	1184	3208											
MOG	4340	broad.mit.edu	37	chr6	29637972	29637972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttggtgttctaggacCccaggttaaggaaccaaaaa	10	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29637972	A	A	29637972	1	1	4	0	1	0	0	0	0	0	0	0	9787	623	22	2		2	MOG	6	29637972	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4030	29637972	141477095	1185	3209											
MOG	4340	broad.mit.edu	37	chr6	29638039	29638039	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacacatgttaaccctgtttGttctggtgaacaattcagat	7	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29638039	C	C	29638039	1	2	4	0	1	0	0	0	0	0	0	0	9787	1392	48	4		4	MOG	6	29638039	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	67	29638039	141477028	1186	3210											
TRIM15	89870	broad.mit.edu	37	chr6	30131749	30131749	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctacttcttctgcgagaaCgatgccgagttcctctgtgt	9	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30131749	G	G	30131749	3	3	4	1	0	0	0	0	1	0	0	0	16614	535	19	4	290	4	TRIM15	6	30131749	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	493710	30131749	140983318	1187	3211											
TRIM15	89870	broad.mit.edu	37	chr6	30138348	30138348	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaagatccgtgatttcCacaggaaaatactcaccctc	6	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30138348	T	T	30138348	3	4	4	1	0	0	0	0	1	0	0	0	16614	594	21	4	820	4	TRIM15	6	30138348	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	6599	30138348	140976719	1188	3212											
ABCF1	23	broad.mit.edu	37	chr6	30545359	30545359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagaggagataggcagGgcacggtggcttacacctgt	15	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30545359	T	T	30545359	1	4	4	0	1	0	0	0	0	0	0	0	65	1247	43	2		2	ABCF1	6	30545359	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	407011	30545359	140569708	1189	3213											
VARS2	57176	broad.mit.edu	37	chr6	30889142	30889142	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagcacctagcccaggagtCagagctccgcagggccaagt	13	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30889142	T	T	30889142	1	4	4	0	1	0	0	0	0	0	0	0	17251	841	29	4		4	VARS2	6	30889142	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	343783	30889142	140225925	1190	3214											
HLA-B	3106	broad.mit.edu	37	chr6	31248807	31248807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacaccaagaagctgccCcgcaagacccaccaaggcct	9	17	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31248807	A	A	31248807	1	1	4	0	1	0	0	0	0	0	0	0	7263	638	22	2		2	HLA-B	6	31248807	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	359665	31248807	139866260	1191	3215											
MCCD1	401250	broad.mit.edu	37	chr6	31495959	31495959	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgagctttcttctgagggtCcgctgctggcagtaccacca	11	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31495959	T	T	31495959	1	4	4	0	1	0	0	0	0	0	0	0	9469	870	30	4		4	MCCD1	6	31495959	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	247152	31495959	139619108	1192	3216											
BAT2	7916	broad.mit.edu	37	chr6	31599436	31599436	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagctagggggccccaagGagaccccacccaatggaaat	13	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31599436	T	T	31599436	4	4	4	1	0	0	0	0	0	1	0	0	1324	1175	41	3	3044	3	BAT2	6	31599436	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	103477	31599436	139515631	1193	3217											
LY6G6F	259215	broad.mit.edu	37	chr6	31675821	31675821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctcttggtgtgtcctGgggaggggctttctgagccc	15	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31675821	T	T	31675821	3	4	4	1	0	0	0	0	1	0	0	0	9184	1348	47	2	566	2	LY6G6F	6	31675821	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	76385	31675821	139439246	1194	3218											
HSPA1L	3305	broad.mit.edu	37	chr6	31777852	31777852	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcaattgtggggcctGtggcaggccttccaggcaca	12	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31777852	A	A	31777852	3	1	4	1	0	0	0	0	1	0	0	0	7479	1377	48	4	31	4	HSPA1L	6	31777852	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	102031	31777852	139337215	1195	3219											
SLC44A4	80736	broad.mit.edu	37	chr6	31833995	31833995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtagctcctgcccctcCcagagttgacaggtgggaag	12	14	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31833995	A	A	31833995	1	1	4	0	1	0	0	0	0	0	0	0	14752	638	22	2		2	SLC44A4	6	31833995	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	56143	31833995	139281072	1196	3220											
EHMT2	10919	broad.mit.edu	37	chr6	31855786	31855786	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcaataggggtgggggaggGaacagacagtacagaagggg	20	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31855786	A	A	31855786	1	1	4	0	1	0	0	0	0	0	0	0	5024	1189	41	4		4	EHMT2	6	31855786	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	21791	31855786	139259281	1197	3221											
CYP21A2	1589	broad.mit.edu	37	chr6	32006974	32006974	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagccctgctgctgggcatCcgtgactccatggagccagt	12	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32006974	T	T	32006974	2	4	4	1	0	0	0	0	0	0	0	1	4186	845	30	4		4	CYP21A2	6	32006974	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	151188	32006974	139108093	1198	3222											
PRRT1	80863	broad.mit.edu	37	chr6	32118113	32118113	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcctgtatcgcgtccccctCtttcccatgtccctgtctgc	7	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32118113	T	T	32118113	1	4	4	0	1	0	0	0	0	0	0	0	12715	928	32	4		4	PRRT1	6	32118113	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	111139	32118113	138996954	1199	3223											
EGFL8	80864	broad.mit.edu	37	chr6	32135778	32135778	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctaatttatacagaaaccgGacccactaatcctctgggat	6	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32135778	A	A	32135778	1	1	4	0	1	0	0	0	0	0	0	0	5005	1189	41	4		4	EGFL8	6	32135778	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	17665	32135778	138979289	1200	3224											
C6orf10	10665	broad.mit.edu	37	chr6	32334095	32334095	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatcctaaaagagaagataAaaacataatgagattttact	7	4	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32334095	G	G	32334095	1	3	4	0	1	0	0	0	0	0	0	0	2340	29	1	5		5	C6orf10	6	32334095	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	198317	32334095	138780972	1201	3225											
PSMB8	5696	broad.mit.edu	37	chr6	32811806	32811807	+	5'UTR	DNP	CG	GT	GT													cccagagatctgtccgctctCggaggaggaagtgaaagcga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	32811807	GT	GT	32811806	1	3	4	0	1	0	0	0	0	0	0	0	12789	899	31	4		4	PSMB8	6	32811806	5'UTR	DNP	CG	TCGA-05-4382-01A-01D-1265-08	477711	32811806	138303261	1202	3226											
BRD2	6046	broad.mit.edu	37	chr6	32942346	32942346	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatgagggctttgagagccCcacaatggcttcggtgcctg	14	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32942346	T	T	32942346	3	4	4	1	0	0	0	0	1	0	0	0	1511	623	22	4	143	4	BRD2	6	32942346	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	130540	32942346	138172721	1203	3227											
RXRB	6257	broad.mit.edu	37	chr6	33162717	33162717	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtgccccccagccccatCtcaccgtccctgctgctcag	7	21	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33162717	A	A	33162717	1	1	4	0	1	0	0	0	0	0	0	0	13875	928	32	3		3	RXRB	6	33162717	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	220371	33162717	137952350	1204	3228											
ITPR3	3710	broad.mit.edu	37	chr6	33646533	33646533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccacgcacgggcgccatGtgcagtacctggacttcctg	13	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33646533	T	T	33646533	3	4	4	1	0	0	0	0	1	0	0	0	7992	1377	48	3	4007	3	ITPR3	6	33646533	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	483816	33646533	137468534	1205	3229											
ITPR3	3710	broad.mit.edu	37	chr6	33648392	33648392	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaagtacgtgctgagcGttgtgctggacaccatcaac	13	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33648392	T	T	33648392	3	4	4	1	0	0	0	0	1	0	0	0	7992	1145	40	3	4541	3	ITPR3	6	33648392	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1859	33648392	137466675	1206	3230											
GRM4	2914	broad.mit.edu	37	chr6	33996102	33996102	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccagggacaccgaggcgctCagactcaccgagaccgtcag	12	16	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33996102	G	G	33996102	2	3	4	1	0	0	0	0	0	0	0	1	6865	813	29	4		4	GRM4	6	33996102	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	347710	33996102	137118965	1207	3231											
TCP11	6954	broad.mit.edu	37	chr6	35090037	35090037	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatgttctgcctcctgcttGagcaagtccatgtccagagc	9	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35090037	T	T	35090037	2	4	4	1	0	0	0	0	0	0	0	1	15835	1277	45	3		3	TCP11	6	35090037	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1093935	35090037	136025030	1208	3232											
C6orf222	389384	broad.mit.edu	37	chr6	36294979	36294979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactctttaggccacacaatGgagggaaagcaccacatccc	8	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36294979	A	A	36294979	1	1	4	0	1	0	0	0	0	0	0	0	2379	1363	47	4		4	C6orf222	6	36294979	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1204942	36294979	134820088	1209	3233											
KCTD20	222658	broad.mit.edu	37	chr6	36442578	36442578	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttagacctctcacttgActatgcctctcagccagcaa	5	14	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36442578	C	C	36442578	3	2	4	1	0	0	0	0	1	0	0	0	8178	275	10	5	179	5	KCTD20	6	36442578	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	147599	36442578	134672489	1210	3234											
CDKN1A	1026	broad.mit.edu	37	chr6	36642771	36642771	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcattgaaacaggggaccGtgtctggaggatgcctctct	13	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36642771	T	T	36642771	1	4	4	0	1	0	0	0	0	0	0	0	3188	1160	40	3		3	CDKN1A	6	36642771	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	200193	36642771	134472296	1211	3235											
FGD2	221472	broad.mit.edu	37	chr6	36981295	36981295	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgtggaaagtttgctttgGgggattcagggagcctggcc	17	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36981295	C	C	36981295	1	2	4	0	1	0	0	0	0	0	0	0	5890	1247	43	4		4	FGD2	6	36981295	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	338524	36981295	134133772	1212	3236											
MDGA1	266727	broad.mit.edu	37	chr6	37620025	37620025	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggggcactgcatccacGtggcacgatagcttcaggtc	12	13	1	0	rs2273108		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37620025	A	A	37620025	2	1	4	1	0	0	0	0	0	0	0	1	9499	1136	40	4		4	MDGA1	6	37620025	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	638730	37620025	133495042	1213	3237											
DNAH8	1769	broad.mit.edu	37	chr6	38795910	38795910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcgtctaaatcatttGgcaatggctttcccttgtga	10	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38795910	T	T	38795910	1	4	4	0	1	0	0	0	0	0	0	0	4647	1363	47	2		2	DNAH8	6	38795910	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1175885	38795910	132319157	1214	3238											
DNAH8	1769	broad.mit.edu	37	chr6	38885138	38885138	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgaccctgttactatggatCcagaaaaatcttgctgtaag	8	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38885138	G	G	38885138	3	3	4	1	0	0	0	0	1	0	0	0	4647	855	30	4	9871	4	DNAH8	6	38885138	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	89228	38885138	132229929	1215	3239											
DNAH8	1769	broad.mit.edu	37	chr6	38980322	38980322	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acactgggcttctggttcacTgaacttttggaaagaaatgc	10	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38980322	A	A	38980322	2	1	4	1	0	0	0	0	0	0	0	1	4647	1567	55	5		5	DNAH8	6	38980322	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	95184	38980322	132134745	1216	3240											
TREML4	285852	broad.mit.edu	37	chr6	41196846	41196846	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacctgaaggaaatgtcatGcaccccctcccatgcctcta	8	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41196846	A	A	41196846	1	1	4	0	1	0	0	0	0	0	0	0	16598	1334	46	4		4	TREML4	6	41196846	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2216524	41196846	129918221	1217	3241											
UBR2	23304	broad.mit.edu	37	chr6	42582899	42582899	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacagactgatgcttagtgAttccaaattatggaaaggtg	12	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42582899	T	T	42582899	3	4	4	1	0	0	0	0	1	0	0	0	17028	333	12	5	1110	5	UBR2	6	42582899	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1386053	42582899	128532168	1218	3242											
UBR2	23304	broad.mit.edu	37	chr6	42650816	42650816	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccgtaacagtgaagttaAaagatatctagaaggtgaaa	11	4	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42650816	T	T	42650816	3	4	4	1	0	0	0	0	1	0	0	0	17028	14	1	5	5058	5	UBR2	6	42650816	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	67917	42650816	128464251	1219	3243											
UBR2	23304	broad.mit.edu	37	chr6	42656209	42656209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaactactatattgccaGgaattttgagactactgttc	8	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42656209	T	T	42656209	1	4	4	0	1	0	0	0	0	0	0	0	17028	1015	35	2		2	UBR2	6	42656209	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5393	42656209	128458858	1220	3244											
CUL9	23113	broad.mit.edu	37	chr6	43164071	43164071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctactcctgtgctccaGgctcatgtactccacagaaa	7	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43164071	T	T	43164071	1	4	4	0	1	0	0	0	0	0	0	0	4094	1015	35	2		2	CUL9	6	43164071	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	507862	43164071	127950996	1221	3245											
SLC22A7	10864	broad.mit.edu	37	chr6	43266099	43266099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggtgggtgagcagcatGggctttgaggagctgctgga	18	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43266099	T	T	43266099	3	4	4	1	0	0	0	0	1	0	0	0	14573	1348	47	2	5	2	SLC22A7	6	43266099	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	102028	43266099	127848968	1222	3246											
RSPH9	221421	broad.mit.edu	37	chr6	43624471	43624471	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcccaaaggtaatagtccAttacctggaggccatgggat	10	9	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43624471	T	T	43624471	1	4	4	0	1	0	0	0	0	0	0	0	13819	232	8	5		5	RSPH9	6	43624471	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	358372	43624471	127490596	1223	3247											
MRPL14	64928	broad.mit.edu	37	chr6	44081782	44081782	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgagcgcctttttcttctgtCccttgatggccagtagtatc	9	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44081782	G	G	44081782	3	3	4	1	0	0	0	0	1	0	0	0	9873	855	30	4	205	4	MRPL14	6	44081782	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	457311	44081782	127033285	1224	3248											
TDRD6	221400	broad.mit.edu	37	chr6	46663754	46663754	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagtttaccagactctgtCagactagagaacgcgattga	10	8	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46663754	T	T	46663754	1	4	4	0	1	0	0	0	0	0	0	0	15856	841	29	4		4	TDRD6	6	46663754	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2581972	46663754	124451313	1225	3249											
MEP1A	4224	broad.mit.edu	37	chr6	46806711	46806711	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccttcatgtccttttcCctcaggtgcatctctggaca	6	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46806711	T	T	46806711	1	4	4	0	1	0	0	0	0	0	0	0	9568	638	22	4		4	MEP1A	6	46806711	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	142957	46806711	124308356	1226	3250											
GPR115	221393	broad.mit.edu	37	chr6	47678337	47678337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcttactcattgccgtGgacccagttcaacccaattg	7	14	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47678337	T	T	47678337	1	4	4	0	1	0	0	0	0	0	0	0	6697	1363	47	2		2	GPR115	6	47678337	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	871626	47678337	123436730	1227	3251											
PKHD1	5314	broad.mit.edu	37	chr6	51497480	51497480	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctccttcctagtcacagGcaagacagcaaatggcttgg	9	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51497480	A	A	51497480	3	1	4	1	0	0	0	0	1	0	0	0	12066	1203	42	4	688	4	PKHD1	6	51497480	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3819143	51497480	119617587	1228	3252											
PKHD1	5314	broad.mit.edu	37	chr6	51915060	51915060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgattccaccagattgcccCctgggcgagccgttccagaa	10	15	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51915060	A	A	51915060	3	1	4	1	0	0	0	0	1	0	0	0	12066	623	22	2	10273	2	PKHD1	6	51915060	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	417580	51915060	119200007	1229	3253											
IL17A	3605	broad.mit.edu	37	chr6	52051334	52051334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccgtgggcatgaaacgctGggttctgactatggagatcc	14	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52051334	T	T	52051334	1	4	4	0	1	0	0	0	0	0	0	0	7704	1363	47	2		2	IL17A	6	52051334	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	136274	52051334	119063733	1230	3254											
GSTA1	2938	broad.mit.edu	37	chr6	52662463	52662463	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaacagtaaatacgttcTtgttagttcattctattata	5	6	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52662463	C	C	52662463	1	2	4	0	1	0	0	0	0	0	0	0	6896	1624	56	5		5	GSTA1	6	52662463	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	611129	52662463	118452604	1231	3255											
FAM83B	222584	broad.mit.edu	37	chr6	54791332	54791332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcagttcagcgtctcaGggtaagaattctgttttttt	9	6	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54791332	T	T	54791332	3	4	4	1	0	0	0	0	1	0	0	0	5687	1014	35	2	614	2	FAM83B	6	54791332	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2128869	54791332	116323735	1232	3256											
HCRTR2	3062	broad.mit.edu	37	chr6	55113565	55113565	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactggtcgtggatatcactGagacctggttttttggacag	12	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55113565	C	C	55113565	3	2	4	1	0	0	0	0	1	0	0	0	7069	1291	45	4	358	4	HCRTR2	6	55113565	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	322233	55113565	116001502	1233	3257											
HCRTR2	3062	broad.mit.edu	37	chr6	55120260	55120260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatagccattgtaaagctGggcttatatattttattgac	8	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55120260	T	T	55120260	1	4	4	0	1	0	0	0	0	0	0	0	7069	1363	47	2		2	HCRTR2	6	55120260	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	6695	55120260	115994807	1234	3258											
HCRTR2	3062	broad.mit.edu	37	chr6	55145212	55145212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatatgccaatagtgctGcgaatccaattatttataat	6	6	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55145212	T	T	55145212	3	4	4	1	0	0	0	0	1	0	0	0	7069	1319	46	3	1097	3	HCRTR2	6	55145212	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	24952	55145212	115969855	1235	3259											
HMGCLL1	54511	broad.mit.edu	37	chr6	55406845	55406845	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacagcatttgaagtaaatGatgtaaaactaccttttcat	6	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55406845	T	T	55406845	1	4	4	0	1	0	0	0	0	0	0	0	7297	1305	45	3		3	HMGCLL1	6	55406845	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	261633	55406845	115708222	1236	3260											
COL21A1	81578	broad.mit.edu	37	chr6	55924961	55924961	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggggagccatgttgggaCaggcaatgatcacaatttct	12	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55924961	A	A	55924961	2	1	4	1	0	0	0	0	0	0	0	1	3712	465	17	3		3	COL21A1	6	55924961	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	518116	55924961	115190106	1237	3261											
DST	667	broad.mit.edu	37	chr6	56371471	56371471	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagccagttgtacctcatcTatactcttcttgacaatggg	7	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56371471	A	A	56371471	2	1	4	1	0	0	0	0	0	0	0	1	4823	1512	53	5		5	DST	6	56371471	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	446510	56371471	114743596	1238	3262											
DST	667	broad.mit.edu	37	chr6	56504070	56504070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttacctcaatagttaacCgggctggatgattttctaga	9	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56504070	A	A	56504070	3	1	4	1	0	0	0	0	1	0	0	0	4823	652	23	1	19123	1	DST	6	56504070	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	132599	56504070	114610997	1239	3263											
PRIM2	5558	broad.mit.edu	37	chr6	57512670	57512670	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggaaatggatatggaaGgactagaggattactttagt	12	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512670	A	A	57512670	3	1	4	1	0	0	0	0	1	0	0	0	12597	1001	35	4	1548	4	PRIM2	6	57512670	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1008600	57512670	113602397	1240	3264											
COL9A1	1297	broad.mit.edu	37	chr6	70948970	70948970	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttacagatccctttgggCcaggtaatcctatatctccc	6	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70948970	T	T	70948970	3	4	4	1	0	0	0	0	1	0	0	0	3739	739	26	4	690	4	COL9A1	6	70948970	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	13436300	70948970	100166097	1241	3265											
DDX43	55510	broad.mit.edu	37	chr6	74116137	74116137	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagatcttataggagtagcCcagactggaacaggaaagac	11	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74116137	A	A	74116137	2	1	4	1	0	0	0	0	0	0	0	1	4396	610	22	2		2	DDX43	6	74116137	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	3167167	74116137	96998930	1242	3266											
LCA5	167691	broad.mit.edu	37	chr6	80197277	80197277	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaataatctctctgaggatTcagagaacctgtatgttttg	8	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80197277	A	A	80197277	3	1	4	1	0	0	0	0	1	0	0	0	8728	1783	62	5	559	5	LCA5	6	80197277	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	6081140	80197277	90917790	1243	3267											
TTK	7272	broad.mit.edu	37	chr6	80746240	80746240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taactttctgatagttgatgGaatgctaaagctaattgatt	8	4	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80746240	T	T	80746240	3	4	4	1	0	0	0	0	1	0	0	0	16846	1174	41	3	2035	3	TTK	6	80746240	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	548963	80746240	90368827	1244	3268											
MRAP2	112609	broad.mit.edu	37	chr6	84799172	84799172	+	Frame_Shift_Del	DEL	C	-	-													tctggaaactaagccactttCccagacctcacacaaagacc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84799172	-	-	84799172	7	5	4	1	0	1	0	1	0	0	0	0	9848	855	30	0	600	0	MRAP2	6	84799172	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	4052932	84799172	86315895	1245	3269											
TBX18	9096	broad.mit.edu	37	chr6	85470001	85470001	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgttgtccactggtacaaTatccatggcaatgtaatatt	7	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85470001	A	A	85470001	3	1	4	1	0	0	0	0	1	0	0	0	15775	1406	49	5	1276	5	TBX18	6	85470001	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	670829	85470001	85645066	1246	3270											
HTR1E	3354	broad.mit.edu	37	chr6	87725346	87725346	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttcctctgtgaggtgtgGctgagtgtggacatgacctg	14	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87725346	A	A	87725346	4	1	4	1	0	0	0	0	0	1	0	0	7509	1212	42	4	296	4	HTR1E	6	87725346	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2255345	87725346	83389721	1247	3271											
CGA	1081	broad.mit.edu	37	chr6	87796106	87796106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgaagtattggggcaccCggctgggagaagaatgggtt	16	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87796106	A	A	87796106	2	1	4	1	0	0	0	0	0	0	0	1	3325	639	23	1		1	CGA	6	87796106	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	70760	87796106	83318961	1248	3272											
ZNF292	23036	broad.mit.edu	37	chr6	87969756	87969756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgattctccattaccagGctgtacacaaatcagatcta	5	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87969756	T	T	87969756	3	4	4	1	0	0	0	0	1	0	0	0	17952	1203	42	3	6439	3	ZNF292	6	87969756	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	173650	87969756	83145311	1249	3273											
C6orf165	154313	broad.mit.edu	37	chr6	88154673	88154673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttatttcaatggctctGttacaatatcagatggcagc	9	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88154673	T	T	88154673	1	4	4	0	1	0	0	0	0	0	0	0	2364	1392	48	3		3	C6orf165	6	88154673	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	184917	88154673	82960394	1250	3274											
GABRR1	2569	broad.mit.edu	37	chr6	89913274	89913274	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagatcaaccaagcacccctCtccctccagatttgcttcaa	4	17	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89913274	A	A	89913274	1	1	4	0	1	0	0	0	0	0	0	0	6236	928	32	3		3	GABRR1	6	89913274	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1758601	89913274	81201793	1251	3275											
MDN1	23195	broad.mit.edu	37	chr6	90442244	90442244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcccctctatacgagcCccttgtccccaccagctacc	5	20	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90442244	A	A	90442244	1	1	4	0	1	0	0	0	0	0	0	0	9508	638	22	2		2	MDN1	6	90442244	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	528970	90442244	80672823	1252	3276											
BACH2	60468	broad.mit.edu	37	chr6	90661411	90661411	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccggcacacaaacaggccAtcctcactgttcaggagctg	9	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90661411	G	G	90661411	2	3	4	1	0	0	0	0	0	0	0	1	1289	214	8	5		5	BACH2	6	90661411	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	219167	90661411	80453656	1253	3277											
NDUFAF4	29078	broad.mit.edu	37	chr6	97338933	97338933	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaaaatgagaaaatataCagcaggagggatgaggagta	13	3	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97338933	A	A	97338933	1	1	4	0	1	0	0	0	0	0	0	0	10372	493	17	3		3	NDUFAF4	6	97338933	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	6677522	97338933	73776134	1254	3278											
COQ3	51805	broad.mit.edu	37	chr6	99819233	99819233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaagtgctaggctaagtgCgtaataattactggcatatt	9	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99819233	A	A	99819233	1	1	4	0	1	0	0	0	0	0	0	0	3778	783	27	3		3	COQ3	6	99819233	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2480300	99819233	71295834	1255	3279											
SIM1	6492	broad.mit.edu	37	chr6	100911441	100911441	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcatatttggcaaaaaCataaaacatactttgaataa	5	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100911441	A	A	100911441	1	1	4	0	1	0	0	0	0	0	0	0	14436	493	17	3		3	SIM1	6	100911441	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	1092208	100911441	70203626	1256	3280											
ASCC3	10973	broad.mit.edu	37	chr6	101173671	101173671	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaatattttggccacctCtacataaatcaaataaaaag	4	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101173671	A	A	101173671	1	1	4	0	1	0	0	0	0	0	0	0	1037	928	32	3		3	ASCC3	6	101173671	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	262230	101173671	69941396	1257	3281											
GRIK2	2898	broad.mit.edu	37	chr6	102483357	102483357	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taatggagtcaacaaccatcGagtttgttacccagcggaac	9	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102483357	C	C	102483357	3	2	4	1	0	0	0	0	1	0	0	0	6840	1059	37	4	2281	4	GRIK2	6	102483357	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1309686	102483357	68631710	1258	3282											
LAMA4	3910	broad.mit.edu	37	chr6	112476088	112476088	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcagttctctggcttgaTtgaggaggttctcactttca	10	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112476088	C	C	112476088	3	2	4	1	0	0	0	0	1	0	0	0	8680	1493	52	5	3546	5	LAMA4	6	112476088	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	9992731	112476088	58638979	1259	3283											
GPRC6A	222545	broad.mit.edu	37	chr6	117127521	117127521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagtttttcttggatgtGtgagttagtacctcccatgg	12	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117127521	T	T	117127521	1	4	4	0	1	0	0	0	0	0	0	0	6794	1392	48	3		3	GPRC6A	6	117127521	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4651433	117127521	53987546	1260	3284											
ROS1	6098	broad.mit.edu	37	chr6	117704587	117704587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtagagatatccaccaaCtgaatccaccaccatgtcat	5	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117704587	A	A	117704587	3	1	4	1	0	0	0	0	1	0	0	0	13642	565	20	3	4766	3	ROS1	6	117704587	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	577066	117704587	53410480	1261	3285											
SLC35F1	222553	broad.mit.edu	37	chr6	118228986	118228986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagaacctgccggccgagGgcagcggcggcggcgggagc	20	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118228986	T	T	118228986	3	4	4	1	0	0	0	0	1	0	0	0	14702	1232	43	2	99	2	SLC35F1	6	118228986	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	524399	118228986	52886081	1262	3286											
C6orf204	387119	broad.mit.edu	37	chr6	118805095	118805095	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaccaacactttaataTtagacaccattgaattcacc	2	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118805095	G	G	118805095	1	3	4	0	1	0	0	0	0	0	0	0	2376	1508	52	5		5	C6orf204	6	118805095	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	576109	118805095	52309972	1263	3287											
NKAIN2	154215	broad.mit.edu	37	chr6	124676272	124676272	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagagataaacgtacatcTaatcctgttccttagagaga	7	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124676272	A	A	124676272	1	1	4	0	1	0	0	0	0	0	0	0	10531	1537	53	5		5	NKAIN2	6	124676272	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	5871177	124676272	46438795	1264	3288											
NCOA7	135112	broad.mit.edu	37	chr6	126203632	126203632	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtcttatcgtctacttctGaagaagatgagccaggtgtg	12	7	3	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126203632	A	A	126203632	3	1	4	1	0	0	0	0	1	0	0	0	10329	1291	45	4	656	4	NCOA7	6	126203632	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1527360	126203632	44911435	1265	3289											
ECHDC1	55862	broad.mit.edu	37	chr6	127611311	127611311	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggccccactcaacactttGagagcttgtctacttccgat	8	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127611311	C	C	127611311	2	2	4	1	0	0	0	0	0	0	0	1	4933	1277	45	4		4	ECHDC1	6	127611311	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1407679	127611311	43503756	1266	3290											
C6orf58	352999	broad.mit.edu	37	chr6	127898540	127898540	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tataaaatcatattgaatcaGacagccaggtattttgcaaa	6	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127898540	C	C	127898540	3	2	4	1	0	0	0	0	1	0	0	0	2391	933	33	4	212	4	C6orf58	6	127898540	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	287229	127898540	43216527	1267	3291											
LAMA2	3908	broad.mit.edu	37	chr6	129370954	129370954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattaattatctcatgttGggttactttaatgctccgaa	6	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129370954	T	T	129370954	1	4	4	0	1	0	0	0	0	0	0	0	8678	1363	47	2		2	LAMA2	6	129370954	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1472414	129370954	41744113	1268	3292											
LAMA2	3908	broad.mit.edu	37	chr6	129478691	129478691	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatttttacatcttgggattCaaccatcttggcaagcgtct	8	9	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129478691	T	T	129478691	1	4	4	0	1	0	0	0	0	0	0	0	8678	841	29	4		4	LAMA2	6	129478691	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	107737	129478691	41636376	1269	3293											
LAMA2	3908	broad.mit.edu	37	chr6	129571509	129571509	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtgccactcttttgtTtcactctgagacatatctag	6	9	4	1	rs140467482	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129571509	C	C	129571509	1	2	4	0	1	0	0	0	0	0	0	0	8678	1856	64	5		5	LAMA2	6	129571509	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	92818	129571509	41543558	1270	3294											
LAMA2	3908	broad.mit.edu	37	chr6	129582044	129582044	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataacctattctaataagaGctgttttttttctatcaata	3	6	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129582044	A	A	129582044	1	1	4	0	1	0	0	0	0	0	0	0	8678	986	34	4		4	LAMA2	6	129582044	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	10535	129582044	41533023	1271	3295											
LAMA2	3908	broad.mit.edu	37	chr6	129759733	129759733	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgaaattgcacatccaaGtataagctcagggatgataa	8	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129759733	A	A	129759733	1	1	4	0	1	0	0	0	0	0	0	0	8678	1044	36	4		4	LAMA2	6	129759733	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	177689	129759733	41355334	1272	3296											
L3MBTL3	84456	broad.mit.edu	37	chr6	130454910	130454910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaataactaatgcatatgGgttaaatgttttgaacctgt	8	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130454910	T	T	130454910	1	4	4	0	1	0	0	0	0	0	0	0	8665	1247	43	2		2	L3MBTL3	6	130454910	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	695177	130454910	40660157	1273	3297											
TMEM200A	114801	broad.mit.edu	37	chr6	130761606	130761606	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgataactggcctggccgcCttgaaaaggcaagactctgc	12	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130761606	A	A	130761606	2	1	4	1	0	0	0	0	0	0	0	1	16246	668	24	2		2	TMEM200A	6	130761606	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	306696	130761606	40353461	1274	3298											
TMEM200A	114801	broad.mit.edu	37	chr6	130762699	130762699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcttgtctcctggggctGccagaagacagtttgggtcc	13	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130762699	T	T	130762699	3	4	4	1	0	0	0	0	1	0	0	0	16246	1319	46	3	1134	3	TMEM200A	6	130762699	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1093	130762699	40352368	1275	3299											
EPB41L2	2037	broad.mit.edu	37	chr6	131201331	131201331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaatattatccccttctaCtctcaaggaatttttctgtg	4	9	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131201331	A	A	131201331	3	1	4	1	0	0	0	0	1	0	0	0	5195	565	20	3	1196	3	EPB41L2	6	131201331	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	438632	131201331	39913736	1276	3300											
EPB41L2	2037	broad.mit.edu	37	chr6	131215588	131215588	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaactgttccagctggaaTaaatccgtaaaacaaatcag	6	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131215588	A	A	131215588	1	1	4	0	1	0	0	0	0	0	0	0	5195	1421	49	5		5	EPB41L2	6	131215588	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	14257	131215588	39899479	1277	3301											
MED23	9439	broad.mit.edu	37	chr6	131917827	131917827	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccttcgtgactacgcatgGcctttgaaaaacaacagaaa	7	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131917827	C	C	131917827	3	2	4	1	0	0	0	0	1	0	0	0	9534	1217	42	4	1540	4	MED23	6	131917827	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	702239	131917827	39197240	1278	3302											
ENPP1	5167	broad.mit.edu	37	chr6	132201185	132201185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagaaatgcaagtatttGtcacctctttatgtgtggcc	10	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132201185	T	T	132201185	1	4	4	0	1	0	0	0	0	0	0	0	5171	1392	48	3		3	ENPP1	6	132201185	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	283358	132201185	38913882	1279	3303											
TAAR8	83551	broad.mit.edu	37	chr6	132874334	132874334	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacagcggtgctgtgttctAcacaggtgtcaatgatgatg	13	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132874334	T	T	132874334	3	4	4	1	0	0	0	0	1	0	0	0	15612	391	14	5	505	5	TAAR8	6	132874334	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	673149	132874334	38240733	1280	3304											
C6orf192	116843	broad.mit.edu	37	chr6	133094199	133094199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagagaggccacttacaaCtaatatcagcaccagcagcc	8	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133094199	A	A	133094199	3	1	4	1	0	0	0	0	1	0	0	0	2372	565	20	3	372	3	C6orf192	6	133094199	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	219865	133094199	38020868	1281	3305											
TBPL1	9519	broad.mit.edu	37	chr6	134303865	134303865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattttcctagacttaacaGcaaaatcatatgtaaagttt	4	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134303865	T	T	134303865	1	4	4	0	1	0	0	0	0	0	0	0	15767	986	34	3		3	TBPL1	6	134303865	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1209666	134303865	36811202	1282	3306											
MAP7	9053	broad.mit.edu	37	chr6	136681826	136681826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggcctctctactaagaCgcagctaccttctttctctc	6	17	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136681826	A	A	136681826	1	1	4	0	1	0	0	0	0	0	0	0	9358	551	19	3		3	MAP7	6	136681826	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2377961	136681826	34433241	1283	3307											
MAP7	9053	broad.mit.edu	37	chr6	136686838	136686838	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacagtgcgggagaaaaagaGagagcacccagaccacaggt	13	9	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136686838	A	A	136686838	1	1	4	0	1	0	0	0	0	0	0	0	9358	957	33	4		4	MAP7	6	136686838	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5012	136686838	34428229	1284	3308											
MAP3K5	4217	broad.mit.edu	37	chr6	136977654	136977654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttagaaccacctgttccCatgtatcccagtctaattct	4	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136977654	A	A	136977654	1	1	4	0	1	0	0	0	0	0	0	0	9345	609	21	2		2	MAP3K5	6	136977654	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	290816	136977654	34137413	1285	3309											
ADAT2	134637	broad.mit.edu	37	chr6	143759805	143759805	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataagacagccaacaggaacTtcagtattttcgagggcttc	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143759805	A	A	143759805	3	1	4	1	0	0	0	0	1	0	0	0	285	1606	56	5	472	5	ADAT2	6	143759805	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	6782151	143759805	27355262	1286	3310											
UTRN	7402	broad.mit.edu	37	chr6	144719295	144719295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccctgttccctggggtGgtgtacctgctcttgcaata	10	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144719295	T	T	144719295	1	4	4	0	1	0	0	0	0	0	0	0	17230	1363	47	2		2	UTRN	6	144719295	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	959490	144719295	26395772	1287	3311											
UTRN	7402	broad.mit.edu	37	chr6	144758883	144758883	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatggacagacagtcccgGtgagtggaaagccaagaaat	13	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144758883	T	T	144758883	5	4	4	1	0	0	0	0	0	0	1	0	17230	1275	44	3	1280	3	UTRN	6	144758883	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	39588	144758883	26356184	1288	3312											
UTRN	7402	broad.mit.edu	37	chr6	145172051	145172051	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagcacttttattttcttGaagaattgacagatctctgc	7	7	2	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145172051	C	C	145172051	1	2	4	0	1	0	0	0	0	0	0	0	17230	1305	45	4		4	UTRN	6	145172051	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	413168	145172051	25943016	1289	3313											
GRM1	2911	broad.mit.edu	37	chr6	146720447	146720447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgtggtggcccctttgGgctacaatggactcctcatc	13	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146720447	T	T	146720447	3	4	4	1	0	0	0	0	1	0	0	0	6862	1232	43	2	2298	2	GRM1	6	146720447	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1548396	146720447	24394620	1290	3314											
ULBP1	80329	broad.mit.edu	37	chr6	150289779	150289779	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatgacttcatcatcactcCtaagtccagacctgaaccac	4	15	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150289779	T	T	150289779	3	4	4	1	0	0	0	0	1	0	0	0	17098	681	24	4	128	4	ULBP1	6	150289779	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3569332	150289779	20825288	1291	3315											
MTHFD1L	25902	broad.mit.edu	37	chr6	151265679	151265679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgccaataacttgctgGctgccgccatcgacacgagg	11	15	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151265679	T	T	151265679	3	4	4	1	0	0	0	0	1	0	0	0	10022	1203	42	3	1552	3	MTHFD1L	6	151265679	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	975900	151265679	19849388	1292	3316											
ZBTB2	57621	broad.mit.edu	37	chr6	151694769	151694769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtccatggttggccaaatCcattttttaaaaaatctgca	6	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151694769	A	A	151694769	3	1	4	1	0	0	0	0	1	0	0	0	17654	855	30	3	1548	3	ZBTB2	6	151694769	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	429090	151694769	19420298	1293	3317											
SYNE1	23345	broad.mit.edu	37	chr6	152711599	152711599	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagaatatcctgggaaggaaGaaagaatactcatcagtagg	12	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152711599	C	C	152711599	1	2	4	0	1	0	0	0	0	0	0	0	15564	957	33	4		4	SYNE1	6	152711599	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1016830	152711599	18403468	1294	3318											
RBM16	22828	broad.mit.edu	37	chr6	155129839	155129839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatatggatatagatgaagGgcaagatggagtggaagagg	18	1	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155129839	T	T	155129839	3	4	4	1	0	0	0	0	1	0	0	0	13226	1232	43	2	1175	2	RBM16	6	155129839	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2418240	155129839	15985228	1295	3319											
NOX3	50508	broad.mit.edu	37	chr6	155761165	155761165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagaacaactcataggagGcctgtctgatgaactcagtt	9	10	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155761165	T	T	155761165	3	4	4	1	0	0	0	0	1	0	0	0	10652	1203	42	3	1145	3	NOX3	6	155761165	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	631326	155761165	15353902	1296	3320											
FNDC1	84624	broad.mit.edu	37	chr6	159618734	159618734	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgcattcttaggatgacTgtgagacaacccatggctgg	12	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159618734	A	A	159618734	1	1	4	0	1	0	0	0	0	0	0	0	6026	1595	55	5		5	FNDC1	6	159618734	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	3857569	159618734	11496333	1297	3321											
FNDC1	84624	broad.mit.edu	37	chr6	159651151	159651151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcagatgatttttccagGctaagttgcatattgatttt	8	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159651151	T	T	159651151	1	4	4	0	1	0	0	0	0	0	0	0	6026	1218	42	3		3	FNDC1	6	159651151	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	32417	159651151	11463916	1298	3322											
PNLDC1	154197	broad.mit.edu	37	chr6	160234489	160234489	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcctaactaaggaataagGatggttgcaccatttgaaga	9	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160234489	T	T	160234489	1	4	4	0	1	0	0	0	0	0	0	0	12243	1189	41	3		3	PNLDC1	6	160234489	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	583338	160234489	10880578	1299	3323											
IGF2R	3482	broad.mit.edu	37	chr6	160461834	160461834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtacttttggaaatgcgGttactattttctttgtcagt	9	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160461834	T	T	160461834	1	4	4	0	1	0	0	0	0	0	0	0	7646	1276	44	3		3	IGF2R	6	160461834	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	227345	160461834	10653233	1300	3324											
SLC22A2	6582	broad.mit.edu	37	chr6	160670243	160670243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttttattccaaatggaCttaccagtaatagagcaaga	6	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160670243	A	A	160670243	1	1	4	0	1	0	0	0	0	0	0	0	14564	580	20	3		3	SLC22A2	6	160670243	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	208409	160670243	10444824	1301	3325											
LPA	4018	broad.mit.edu	37	chr6	160963586	160963586	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactttttttaatttttctAtattttttcctccttcagaa	1	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160963586	G	G	160963586	1	3	4	0	1	0	0	0	0	0	0	0	8990	464	16	5		5	LPA	6	160963586	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	293343	160963586	10151481	1302	3326											
LPA	4018	broad.mit.edu	37	chr6	160968737	160968737	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacgcttagcctcctgaagtCtttccagtattttcctctgc	6	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160968737	A	A	160968737	1	1	4	0	1	0	0	0	0	0	0	0	8990	928	32	3		3	LPA	6	160968737	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5151	160968737	10146330	1303	3327											
LPA	4018	broad.mit.edu	37	chr6	160968856	160968856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcccatttatttgtccctgGaatgaacgtgctgtgtctat	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160968856	T	T	160968856	3	4	4	1	0	0	0	0	1	0	0	0	8990	1174	41	3	885	3	LPA	6	160968856	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	119	160968856	10146211	1304	3328											
LPA	4018	broad.mit.edu	37	chr6	161032522	161032522	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagttcggagaactcagcTtgaagcatgtctcttgtcac	10	9	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161032522	A	A	161032522	1	1	4	0	1	0	0	0	0	0	0	0	8990	1624	56	5		5	LPA	6	161032522	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	63666	161032522	10082545	1305	3329											
LPA	4018	broad.mit.edu	37	chr6	161087475	161087475	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggaaactccagaagaaCagagcagtggtgatggacct	12	8	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161087475	A	A	161087475	1	1	4	0	1	0	0	0	0	0	0	0	8990	493	17	3		3	LPA	6	161087475	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	54953	161087475	10027592	1306	3330											
PLG	5340	broad.mit.edu	37	chr6	161123264	161123264	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatctggtttgtggatgcGtttactctcatgtaagtcaa	9	7	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161123264	T	T	161123264	1	4	4	0	1	0	0	0	0	0	0	0	12181	1160	40	3		3	PLG	6	161123264	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	35789	161123264	9991803	1307	3331											
PLG	5340	broad.mit.edu	37	chr6	161160298	161160298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatatttgctttatgtctGggttttatgggccatggcca	11	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161160298	T	T	161160298	1	4	4	0	1	0	0	0	0	0	0	0	12181	1363	47	2		2	PLG	6	161160298	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	37034	161160298	9954769	1308	3332											
MAP3K4	4216	broad.mit.edu	37	chr6	161469311	161469311	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcccatgctgtttcttcctCcttaaattgaaggtgattac	6	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161469311	A	A	161469311	1	1	4	0	1	0	0	0	0	0	0	0	9344	870	30	3		3	MAP3K4	6	161469311	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	309013	161469311	9645756	1309	3333											
PARK2	5071	broad.mit.edu	37	chr6	161990329	161990329	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccctggggagcccaaactgTctcattagcgtctatctttc	8	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161990329	A	A	161990329	1	1	4	0	1	0	0	0	0	0	0	0	11543	1682	58	5		5	PARK2	6	161990329	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	521018	161990329	9124738	1310	3334											
PARK2	5071	broad.mit.edu	37	chr6	162474997	162474997	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctatttaaatatcataaCacttttggcaaacattatta	2	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162474997	G	G	162474997	1	3	4	0	1	0	0	0	0	0	0	0	11543	493	17	4		4	PARK2	6	162474997	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	484668	162474997	8640070	1311	3335											
PARK2	5071	broad.mit.edu	37	chr6	162989902	162989902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgagatcaataagtgtaCagagatggagaatgaattta	12	2	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162989902	A	A	162989902	1	1	4	0	1	0	0	0	0	0	0	0	11543	493	17	3		3	PARK2	6	162989902	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	514905	162989902	8125165	1312	3336											
C6orf118	168090	broad.mit.edu	37	chr6	165711483	165711483	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctatcattctgctccagGgctgcttttgtggctgtcac	9	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165711483	T	T	165711483	2	4	4	1	0	0	0	0	0	0	0	1	2346	1219	43	2		2	C6orf118	6	165711483	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	2721581	165711483	5403584	1313	3337											
PDE10A	10846	broad.mit.edu	37	chr6	165801829	165801829	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtggtgctgctccatGgtggaagtggagtagagagc	18	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165801829	T	T	165801829	2	4	4	1	0	0	0	0	0	0	0	1	11724	1335	47	2		2	PDE10A	6	165801829	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	90346	165801829	5313238	1314	3338											
SFT2D1	113402	broad.mit.edu	37	chr6	166733691	166733691	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcaagtgctcttttccaCaagtttctgattttcaactt	4	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166733691	A	A	166733691	1	1	4	0	1	0	0	0	0	0	0	0	14298	493	17	3		3	SFT2D1	6	166733691	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	931862	166733691	4381376	1315	3339											
FGFR1OP	11116	broad.mit.edu	37	chr6	167447483	167447483	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgttctgcatttcccatAgagtgctttttttttttaac	7	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167447483	G	G	167447483	1	3	4	0	1	0	0	0	0	0	0	0	5921	435	15	5		5	FGFR1OP	6	167447483	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	713792	167447483	3667584	1316	3340											
UNC93A	54346	broad.mit.edu	37	chr6	167711556	167711556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctcctgggcatctacaCtggtacgagctccatcggcc	9	17	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167711556	A	A	167711556	3	1	4	1	0	0	0	0	1	0	0	0	17122	565	20	3	637	3	UNC93A	6	167711556	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	264073	167711556	3403511	1317	3341											
PRKAR1B	5575	broad.mit.edu	37	chr7	591043	591043	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caccgaagtagtcagagggtCccaggcgccccacctccacg	11	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	591043	G	G	591043	3	3	4	1	0	0	0	0	1	0	0	0	12610	855	30	4	197	4	PRKAR1B	7	591043	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08		591043	158547620	1318	3342											
PSMG3	84262	broad.mit.edu	37	chr7	1608771	1608771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactttacctcatcctgccCcagaaggacttttgtggtga	8	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1608771	A	A	1608771	3	1	4	1	0	0	0	0	1	0	0	0	12819	623	22	2	171	2	PSMG3	7	1608771	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1017728	1608771	157529892	1319	3343											
MAD1L1	8379	broad.mit.edu	37	chr7	2257492	2257492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggcagcagctaacctcaCagaaggaccacggagctcgg	13	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2257492	A	A	2257492	1	1	4	0	1	0	0	0	0	0	0	0	9235	493	17	3		3	MAD1L1	7	2257492	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	648721	2257492	156881171	1320	3344											
CHST12	55501	broad.mit.edu	37	chr7	2472659	2472659	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggagcggaggagcgtgctgCggggcttctgcgccaactcc	17	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2472659	T	T	2472659	3	4	4	1	0	0	0	0	1	0	0	0	3431	759	27	4	387	4	CHST12	7	2472659	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	215167	2472659	156666004	1321	3345											
C7orf27	221927	broad.mit.edu	37	chr7	2581099	2581099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtagagacgcctggggcCacggtgaagggcgctggggc	19	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2581099	A	A	2581099	3	1	4	1	0	0	0	0	1	0	0	0	2407	595	21	2	1335	2	C7orf27	7	2581099	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	108440	2581099	156557564	1322	3346											
TTYH3	80727	broad.mit.edu	37	chr7	2687693	2687693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcatcctggtggggtgaGtctgggggtgtcggcccccc	19	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2687693	T	T	2687693	1	4	4	0	1	0	0	0	0	0	0	0	16867	1044	36	3		3	TTYH3	7	2687693	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	106594	2687693	156450970	1323	3347											
CARD11	84433	broad.mit.edu	37	chr7	2951726	2951726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaactcttcatcccaccCttgtccctggcccaggtggc	7	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2951726	A	A	2951726	1	1	4	0	1	0	0	0	0	0	0	0	2671	696	24	2		2	CARD11	7	2951726	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	264033	2951726	156186937	1324	3348											
CARD11	84433	broad.mit.edu	37	chr7	2976598	2976598	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctccacggggaggtggggActggccacagccctcagtgg	17	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2976598	G	G	2976598	1	3	4	0	1	0	0	0	0	0	0	0	2671	290	10	5		5	CARD11	7	2976598	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	24872	2976598	156162065	1325	3349											
SDK1	221935	broad.mit.edu	37	chr7	4026893	4026893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgccgtggtgctctcttgGgtccggccctttgatggaaa	13	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4026893	T	T	4026893	3	4	4	1	0	0	0	0	1	0	0	0	14081	1241	43	2	2124	2	SDK1	7	4026893	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1050295	4026893	155111770	1326	3350											
SDK1	221935	broad.mit.edu	37	chr7	4116809	4116810	+	Missense_Mutation	DNP	GG	TT	TT													cttcatccaccatttcttctGgagtgcccccaggtcagtag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	4116810	TT	TT	4116809	3	4	4	1	0	0	0	0	1	0	0	0	14081	1349	47	2	3272	2	SDK1	7	4116809	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	89916	4116809	155021854	1327	3351											
RADIL	55698	broad.mit.edu	37	chr7	4839071	4839071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtcggacttcgcgaccaGgaaccgcatcttcttcccgc	9	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4839071	T	T	4839071	3	4	4	1	0	0	0	0	1	0	0	0	13105	991	35	2	65	2	RADIL	7	4839071	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	722262	4839071	154299592	1328	3352											
RADIL	55698	broad.mit.edu	37	chr7	4874578	4874578	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggcaggggctgggcctgcGcggggtccttgaatagcagc	19	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4874578	C	C	4874578	3	2	4	1	0	0	0	0	1	0	0	0	13105	1087	38	4	2199	4	RADIL	7	4874578	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	35507	4874578	154264085	1329	3353											
WIPI2	26100	broad.mit.edu	37	chr7	5239262	5239262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttctccctttcttctgtgGataagctggaacagatctat	7	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5239262	T	T	5239262	3	4	4	1	0	0	0	0	1	0	0	0	17498	1174	41	3	194	3	WIPI2	7	5239262	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	364684	5239262	153899401	1330	3354											
TNRC18	84629	broad.mit.edu	37	chr7	5364053	5364053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgccgggttggggaccCtctctggaaacctggagcca	14	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5364053	A	A	5364053	1	1	4	0	1	0	0	0	0	0	0	0	16462	696	24	2		2	TNRC18	7	5364053	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	124791	5364053	153774610	1331	3355											
RSPH10B2	728194	broad.mit.edu	37	chr7	6006407	6006407	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactgcactccagcctgaacGacagagtgaaactctgtctc	8	14	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6006407	A	A	6006407	1	1	4	0	1	0	0	0	0	0	0	0	13815	1073	37	4		4	RSPH10B2	7	6006407	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	642354	6006407	153132256	1332	3356											
RSPH10B2	728194	broad.mit.edu	37	chr7	6006566	6006566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttctgctgaacgttttggCggtcttttttgggtttcact	11	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6006566	A	A	6006566	3	1	4	1	0	0	0	0	1	0	0	0	13815	768	27	3	2506	3	RSPH10B2	7	6006566	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	159	6006566	153132097	1333	3357											
RSPH10B2	728194	broad.mit.edu	37	chr7	6836427	6836427	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtccctcctctccttccCcagctgctcgctctcttcct	6	20	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6836427	A	A	6836427	1	1	4	0	1	0	0	0	0	0	0	0	13815	638	22	2		2	RSPH10B2	7	6836427	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	829861	6836427	152302236	1334	3358											
COL28A1	340267	broad.mit.edu	37	chr7	7413034	7413034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgattatgcctatgcgggCcgtggcaaggtccagagcaa	14	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7413034	A	A	7413034	3	1	4	1	0	0	0	0	1	0	0	0	3718	739	26	3	890	3	COL28A1	7	7413034	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	576607	7413034	151725629	1335	3359											
THSD7A	221981	broad.mit.edu	37	chr7	11468710	11468710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaccactcactgagcttgCagtctgaggggcaggggatg	16	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11468710	A	A	11468710	3	1	4	1	0	0	0	0	1	0	0	0	16002	710	25	3	1922	3	THSD7A	7	11468710	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4055676	11468710	147669953	1336	3360											
TMEM195	392636	broad.mit.edu	37	chr7	15425104	15425104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtctcttcataaaatgcCaacatcagagcaaactgtac	6	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15425104	A	A	15425104	3	1	4	1	0	0	0	0	1	0	0	0	16240	593	21	2	312	2	TMEM195	7	15425104	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3956394	15425104	143713559	1337	3361											
MEOX2	4223	broad.mit.edu	37	chr7	15725505	15725505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgagggtgcctggcgcgcCcttacctgagctgtcgcttt	13	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15725505	A	A	15725505	1	1	4	0	1	0	0	0	0	0	0	0	9567	638	22	2		2	MEOX2	7	15725505	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	300401	15725505	143413158	1338	3362											
SOSTDC1	25928	broad.mit.edu	37	chr7	16502317	16502317	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacttgcaggcagtgacTactgtgattttgtaggtgcg	13	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16502317	A	A	16502317	2	1	4	1	0	0	0	0	0	0	0	1	15053	1509	53	5		5	SOSTDC1	7	16502317	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	776812	16502317	142636346	1339	3363											
ANKMY2	57037	broad.mit.edu	37	chr7	16666731	16666731	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacaatttacatcggctcCatgtcgcagtagtaatttgc	8	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16666731	A	A	16666731	4	1	4	1	0	0	0	0	0	1	0	0	635	603	21	2	1152	2	ANKMY2	7	16666731	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	164414	16666731	142471932	1340	3364											
TMEM196	256130	broad.mit.edu	37	chr7	19761705	19761705	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaaaacattgattacactCttccattaaatatcagctgt	3	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19761705	A	A	19761705	3	1	4	1	0	0	0	0	1	0	0	0	16241	913	32	3	10	3	TMEM196	7	19761705	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3094974	19761705	139376958	1341	3365											
ITGB8	3696	broad.mit.edu	37	chr7	20438362	20438362	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttttattcatccttttatAgaaacagactctttgatcta	4	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20438362	G	G	20438362	1	3	4	0	1	0	0	0	0	0	0	0	7971	435	15	5		5	ITGB8	7	20438362	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	676657	20438362	138700301	1342	3366											
ABCB5	340273	broad.mit.edu	37	chr7	20668259	20668259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgcttgGtgtgtttgtttgttttacag	15	2	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20668259	T	T	20668259	1	4	4	0	1	0	0	0	0	0	0	0	44	1276	44	3		3	ABCB5	7	20668259	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	229897	20668259	138470404	1343	3367											
ABCB5	340273	broad.mit.edu	37	chr7	20698651	20698651	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgcttcttctacatacacCtgtgggattctcttctctga	6	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20698651	G	G	20698651	1	3	4	0	1	0	0	0	0	0	0	0	44	696	24	4		4	ABCB5	7	20698651	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	30392	20698651	138440012	1344	3368											
ABCB5	340273	broad.mit.edu	37	chr7	20784905	20784906	+	Missense_Mutation	DNP	CC	AA	AA													aatgtacagtggctccgttcCcaaatagcaatcgttcctca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20784906	AA	AA	20784905	3	1	4	1	0	0	0	0	1	0	0	0	44	610	22	2	3412	2	ABCB5	7	20784905	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	86254	20784905	138353758	1345	3369											
DNAH11	8701	broad.mit.edu	37	chr7	21789247	21789247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacacacaacctctcaaCgccgcatcagcattttaaca	3	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21789247	A	A	21789247	1	1	4	0	1	0	0	0	0	0	0	0	4639	551	19	3		3	DNAH11	7	21789247	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1004342	21789247	137349416	1346	3370											
KLHL7	55975	broad.mit.edu	37	chr7	23180421	23180421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggagtgtctagattgtcCtgaattgaaagcaactgcag	12	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23180421	A	A	23180421	3	1	4	1	0	0	0	0	1	0	0	0	8465	681	24	2	557	2	KLHL7	7	23180421	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1391174	23180421	135958242	1347	3371											
KLHL7	55975	broad.mit.edu	37	chr7	23180432	23180432	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagattgtcctgaattgaaaGcaactgcagatgactttatt	8	6	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23180432	A	A	23180432	3	1	4	1	0	0	0	0	1	0	0	0	8465	971	34	4	568	4	KLHL7	7	23180432	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	11	23180432	135958231	1348	3372											
KLHL7	55975	broad.mit.edu	37	chr7	23205441	23205441	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaataaagcgaatggactGctataatgtagtgaaggata	10	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23205441	C	C	23205441	3	2	4	1	0	0	0	0	1	0	0	0	8465	1319	46	4	1154	4	KLHL7	7	23205441	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	25009	23205441	135933222	1349	3373											
STK31	56164	broad.mit.edu	37	chr7	23808851	23808851	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccagggaatatatattttAaaaatcacgcgctttgttca	6	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23808851	T	T	23808851	1	4	4	0	1	0	0	0	0	0	0	0	15414	377	13	5		5	STK31	7	23808851	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	603410	23808851	135329812	1350	3374											
NPY	4852	broad.mit.edu	37	chr7	24324910	24324910	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactgaccctcgccctgtcCctgctcgtgtgcctgggtgc	13	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24324910	T	T	24324910	2	4	4	1	0	0	0	0	0	0	0	1	10702	610	22	4		4	NPY	7	24324910	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	516059	24324910	134813753	1351	3375											
OSBPL3	26031	broad.mit.edu	37	chr7	24870410	24870410	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaaaaaaactggaagcCcttgtcctcccgaatacatt	6	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24870410	T	T	24870410	3	4	4	1	0	0	0	0	1	0	0	0	11373	623	22	4	834	4	OSBPL3	7	24870410	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	545500	24870410	134268253	1352	3376											
HOXA1	3198	broad.mit.edu	37	chr7	27134253	27134253	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaccagatcttcacttGggtctcgttgagctgcaggg	13	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27134253	C	C	27134253	3	2	4	1	0	0	0	0	1	0	0	0	7355	1357	47	4	197	4	HOXA1	7	27134253	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2263843	27134253	132004410	1353	3377											
HOXA4	3201	broad.mit.edu	37	chr7	27168603	27168603	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtatccacacctggcagccTtgtttcgggccagcaggttg	13	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27168603	A	A	27168603	1	1	4	0	1	0	0	0	0	0	0	0	7361	1624	56	5		5	HOXA4	7	27168603	3'UTR	SNP	T	TCGA-05-4382-01A-01D-1265-08	34350	27168603	131970060	1354	3378											
TAX1BP1	8887	broad.mit.edu	37	chr7	27827145	27827145	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgattactcatttcaaagaaGagattggcaggctgcagtta	10	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27827145	T	T	27827145	4	4	4	1	0	0	0	0	0	1	0	0	15713	943	33	3	987	3	TAX1BP1	7	27827145	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	658542	27827145	131311518	1355	3379											
PLEKHA8	84725	broad.mit.edu	37	chr7	30092445	30092445	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagagatagactgcagCatatcaagtgaggaaaatac	10	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30092445	T	T	30092445	2	4	4	1	0	0	0	0	0	0	0	1	12157	709	25	4		4	PLEKHA8	7	30092445	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2265300	30092445	129046218	1356	3380											
CRHR2	1395	broad.mit.edu	37	chr7	30695457	30695457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccctgggtgaggcctggGgcagagggctctgccaggaa	18	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30695457	T	T	30695457	1	4	4	0	1	0	0	0	0	0	0	0	3904	1247	43	2		2	CRHR2	7	30695457	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	603012	30695457	128443206	1357	3381											
INMT	11185	broad.mit.edu	37	chr7	30795470	30795470	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaagcctgggccctgagcCaggagggccagccagaggtc	16	12	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30795470	T	T	30795470	1	4	4	0	1	0	0	0	0	0	0	0	7815	609	21	4		4	INMT	7	30795470	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	100013	30795470	128343193	1358	3382											
GHRHR	2692	broad.mit.edu	37	chr7	31014634	31014634	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactggtggatcatcaaaggGcccattgtcctctcggtcgg	12	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31014634	T	T	31014634	2	4	4	1	0	0	0	0	0	0	0	1	6437	1190	42	3		3	GHRHR	7	31014634	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	219164	31014634	128124029	1359	3383											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31146224	31146224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggtgaatgggggcaccCagctctccatcctgagcaag	15	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31146224	A	A	31146224	3	1	4	1	0	0	0	0	1	0	0	0	303	595	21	2	1391	2	ADCYAP1R1	7	31146224	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	131590	31146224	127992439	1360	3384											
CCDC129	223075	broad.mit.edu	37	chr7	31592660	31592660	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggcacagaaatcacaaGgatctgacaaccttcaggaa	9	9	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31592660	T	T	31592660	4	4	4	1	0	0	0	0	0	1	0	0	2790	1001	35	2	24	2	CCDC129	7	31592660	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	446436	31592660	127546003	1361	3385											
CCDC129	223075	broad.mit.edu	37	chr7	31617853	31617853	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagcctgtgatgatttgctAccttatcctcctcatggtct	7	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31617853	G	G	31617853	2	3	4	1	0	0	0	0	0	0	0	1	2790	378	14	5		5	CCDC129	7	31617853	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	25193	31617853	127520810	1362	3386											
PDE1C	5137	broad.mit.edu	37	chr7	31792857	31792857	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcacatacaactttcaTttcaccttggtggagtcaac	5	10	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31792857	A	A	31792857	1	1	4	0	1	0	0	0	0	0	0	0	11729	1508	52	5		5	PDE1C	7	31792857	3'UTR	SNP	T	TCGA-05-4382-01A-01D-1265-08	175004	31792857	127345806	1363	3387											
PDE1C	5137	broad.mit.edu	37	chr7	31887551	31887551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaaagttccttccctggCctacaaatctctctcttttc	3	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31887551	A	A	31887551	1	1	4	0	1	0	0	0	0	0	0	0	11729	754	26	3		3	PDE1C	7	31887551	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	94694	31887551	127251112	1364	3388											
AVL9	23080	broad.mit.edu	37	chr7	32756305	32756305	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaattataatttatttgCctttgttttataaatcgaag	4	4	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32756305	T	T	32756305	1	4	4	0	1	0	0	0	0	0	0	0	1233	754	26	4		4	AVL9	7	32756305	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	868754	32756305	126382358	1365	3389											
BMPER	168667	broad.mit.edu	37	chr7	33945247	33945247	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctctggttctccggcgtcGgggctctggctgagcgttac	15	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33945247	A	A	33945247	3	1	4	1	0	0	0	0	1	0	0	0	1474	1116	39	4	24	4	BMPER	7	33945247	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1188942	33945247	125193416	1366	3390											
BMPER	168667	broad.mit.edu	37	chr7	34091682	34091682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatggtgtgttatttattGggaggaagcattaacaatgc	11	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34091682	T	T	34091682	1	4	4	0	1	0	0	0	0	0	0	0	1474	1363	47	2		2	BMPER	7	34091682	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	146435	34091682	125046981	1367	3391											
BMPER	168667	broad.mit.edu	37	chr7	34125411	34125412	+	Missense_Mutation	DNP	GG	TT	TT													gacagttttgtagaagtcatGgctgcgccgcatctcaaggg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	34125412	TT	TT	34125411	3	4	4	1	0	0	0	0	1	0	0	0	1474	1348	47	2	1502	2	BMPER	7	34125411	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	33729	34125411	125013252	1368	3392											
BMPER	168667	broad.mit.edu	37	chr7	34182962	34182962	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccactgggagcctcagcaGaattgtgcaggtaagaaagt	13	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34182962	A	A	34182962	2	1	4	1	0	0	0	0	0	0	0	1	1474	933	33	4		4	BMPER	7	34182962	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	57551	34182962	124955701	1369	3393											
SEPT7	989	broad.mit.edu	37	chr7	35841910	35841910	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataagcaaccgagatttttCtaggacatttccatttgctg	7	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35841910	T	T	35841910	1	4	4	0	1	0	0	0	0	0	0	0	14182	928	32	4		4	SEPT7	7	35841910	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1658948	35841910	123296753	1370	3394											
ELMO1	9844	broad.mit.edu	37	chr7	37172661	37172661	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcactcatctaaaggtaatcCctccgtatttgtgagtttga	7	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37172661	G	G	37172661	1	3	4	0	1	0	0	0	0	0	0	0	5107	638	22	4		4	ELMO1	7	37172661	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1330751	37172661	121966002	1371	3395											
ELMO1	9844	broad.mit.edu	37	chr7	37253043	37253043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctcattgttgatggccCgctgggctcggatgacatgc	12	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37253043	A	A	37253043	3	1	4	1	0	0	0	0	1	0	0	0	5107	652	23	1	1376	1	ELMO1	7	37253043	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	80382	37253043	121885620	1372	3396											
TXNDC3	51314	broad.mit.edu	37	chr7	37890184	37890184	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagattgggataactgctatCctagattggtagactttgtt	10	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37890184	A	A	37890184	1	1	4	0	1	0	0	0	0	0	0	0	16924	870	30	3		3	TXNDC3	7	37890184	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	637141	37890184	121248479	1373	3397											
TXNDC3	51314	broad.mit.edu	37	chr7	37905093	37905093	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgttttacatgtgatcccacGacacctggatttgaccttac	7	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37905093	A	A	37905093	1	1	4	0	1	0	0	0	0	0	0	0	16924	1073	37	4		4	TXNDC3	7	37905093	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	14909	37905093	121233570	1374	3398											
TXNDC3	51314	broad.mit.edu	37	chr7	37936532	37936532	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttgcagaatggagacgattGatgggcccaacagacccaga	13	9	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37936532	T	T	37936532	3	4	4	1	0	0	0	0	1	0	0	0	16924	1281	45	3	1663	3	TXNDC3	7	37936532	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	31439	37936532	121202131	1375	3399											
AMPH	273	broad.mit.edu	37	chr7	38500951	38500951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactgatgatgttctcctGctgcagttcctttgtcgggg	12	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38500951	T	T	38500951	3	4	4	1	0	0	0	0	1	0	0	0	588	1328	46	3	1182	3	AMPH	7	38500951	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	564419	38500951	120637712	1376	3400											
AMPH	273	broad.mit.edu	37	chr7	38543334	38543335	+	Intron	DNP	TC	CA	CA													acaagcacagatgctaaataTctagtctatattctgcatga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	38543335	CA	CA	38543334	1	2	4	0	1	0	0	0	0	0	0	0	588	1450	50	5		5	AMPH	7	38543334	Intron	DNP	TC	TCGA-05-4382-01A-01D-1265-08	42383	38543334	120595329	1377	3401											
C7orf36	57002	broad.mit.edu	37	chr7	39610208	39610208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtcattttaaactatggacGactccgaggaacattgaggt	10	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39610208	T	T	39610208	3	4	4	1	0	0	0	0	1	0	0	0	2415	1058	37	3	239	3	C7orf36	7	39610208	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1066874	39610208	119528455	1378	3402											
CDK13	8621	broad.mit.edu	37	chr7	40085426	40085426	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaatgtattaattattctCattcttaggtgcattttatc	4	6	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40085426	G	G	40085426	1	3	4	0	1	0	0	0	0	0	0	0	3159	841	29	4		4	CDK13	7	40085426	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	475218	40085426	119053237	1379	3403											
C7orf25	79020	broad.mit.edu	37	chr7	42971829	42971829	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttcatttccccgcccCtcacctttcctttactctct	1	19	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42971829	A	A	42971829	1	1	4	0	1	0	0	0	0	0	0	0	2405	696	24	2		2	C7orf25	7	42971829	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	2886403	42971829	116166834	1380	3404											
HECW1	23072	broad.mit.edu	37	chr7	43436462	43436462	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtccaaggacaaggaagtcGgaggctgatcagcttctctc	12	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43436462	C	C	43436462	3	2	4	1	0	0	0	0	1	0	0	0	7109	1116	39	4	623	4	HECW1	7	43436462	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	464633	43436462	115702201	1381	3405											
HECW1	23072	broad.mit.edu	37	chr7	43484004	43484004	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggaaccaaagcatagaGctttccagaccagctgagga	11	11	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43484004	A	A	43484004	2	1	4	1	0	0	0	0	0	0	0	1	7109	962	34	4		4	HECW1	7	43484004	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	47542	43484004	115654659	1382	3406											
HECW1	23072	broad.mit.edu	37	chr7	43505959	43505959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgtgggtgaaggcttGtgtgctgccactgtcaggag	17	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43505959	T	T	43505959	1	4	4	0	1	0	0	0	0	0	0	0	7109	1392	48	3		3	HECW1	7	43505959	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	21955	43505959	115632704	1383	3407											
HECW1	23072	broad.mit.edu	37	chr7	43547716	43547716	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaagctctacgtcaccttTgttggagaggaggggtgagg	15	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43547716	A	A	43547716	3	1	4	1	0	0	0	0	1	0	0	0	7109	1809	63	5	3934	5	HECW1	7	43547716	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	41757	43547716	115590947	1384	3408											
AEBP1	165	broad.mit.edu	37	chr7	44150429	44150429	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgggcaccatgcccaggctCttggctctgctcccattgtc	11	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44150429	T	T	44150429	1	4	4	0	1	0	0	0	0	0	0	0	349	928	32	4		4	AEBP1	7	44150429	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	602713	44150429	114988234	1385	3409											
MYL7	58498	broad.mit.edu	37	chr7	44179508	44179508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgtctccagcatcccaGgtcccccgcaggaggaactg	10	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44179508	T	T	44179508	1	4	4	0	1	0	0	0	0	0	0	0	10147	1015	35	2		2	MYL7	7	44179508	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	29079	44179508	114959155	1386	3410											
YKT6	10652	broad.mit.edu	37	chr7	44244335	44244335	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagctttctcctttctacTgggaccctactcctcctcta	4	18	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44244335	A	A	44244335	1	1	4	0	1	0	0	0	0	0	0	0	17612	1595	55	5		5	YKT6	7	44244335	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	64827	44244335	114894328	1387	3411											
NUDCD3	23386	broad.mit.edu	37	chr7	44507863	44507863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaactggccatcagagtcaCcaaccccaatgccaggctgc	8	17	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44507863	A	A	44507863	1	1	4	0	1	0	0	0	0	0	0	0	10819	522	18	3		3	NUDCD3	7	44507863	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	263528	44507863	114630800	1388	3412											
MYO1G	64005	broad.mit.edu	37	chr7	45010694	45010694	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatgaacagtccgggctccAtgtctcaaaagagcctggac	10	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45010694	T	T	45010694	1	4	4	0	1	0	0	0	0	0	0	0	10168	232	8	5		5	MYO1G	7	45010694	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	502831	45010694	114127969	1389	3413											
IGFBP1	3484	broad.mit.edu	37	chr7	45930211	45930212	+	Missense_Mutation	DNP	CC	GA	GA													gaggagctcctggataatttCcatctgatggccccttctga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	45930212	GA	GA	45930211	3	3	4	1	0	0	0	0	1	0	0	0	7648	854	30	4	420	4	IGFBP1	7	45930211	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	919517	45930211	113208452	1390	3414											
IGFBP1	3484	broad.mit.edu	37	chr7	45931685	45931685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccttgccagtgtgcgtcGtcagggtgaaagggactact	15	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45931685	T	T	45931685	1	4	4	0	1	0	0	0	0	0	0	0	7648	1160	40	3		3	IGFBP1	7	45931685	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1474	45931685	113206978	1391	3415											
TNS3	64759	broad.mit.edu	37	chr7	47342932	47342932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggccacttcccactggggCggtgccgaagcccaggaagg	15	13	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47342932	A	A	47342932	3	1	4	1	0	0	0	0	1	0	0	0	16467	768	27	3	1304	3	TNS3	7	47342932	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1411247	47342932	111795731	1392	3416											
PKD1L1	168507	broad.mit.edu	37	chr7	47897495	47897495	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacaaactgtcttgaatccaGactaggagagaggggaaaag	12	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47897495	T	T	47897495	1	4	4	0	1	0	0	0	0	0	0	0	12059	957	33	3		3	PKD1L1	7	47897495	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	554563	47897495	111241168	1393	3417											
PKD1L1	168507	broad.mit.edu	37	chr7	47942094	47942094	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggcaaggacctccactGtaaattctccttccctggga	9	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47942094	C	C	47942094	3	2	4	1	0	0	0	0	1	0	0	0	12059	1377	48	4	6783	4	PKD1L1	7	47942094	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	44599	47942094	111196569	1394	3418											
UPP1	7378	broad.mit.edu	37	chr7	48146928	48146928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggagcttctcacatgcatGtggttctcatgtctccatgt	9	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48146928	T	T	48146928	1	4	4	0	1	0	0	0	0	0	0	0	17138	1392	48	3		3	UPP1	7	48146928	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	204834	48146928	110991735	1395	3419											
ABCA13	154664	broad.mit.edu	37	chr7	48349530	48349530	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatactcacctctaatctctGtgctttgaaacaggttctct	5	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48349530	A	A	48349530	1	1	4	0	1	0	0	0	0	0	0	0	31	1392	48	4		4	ABCA13	7	48349530	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	202602	48349530	110789133	1396	3420											
ABCA13	154664	broad.mit.edu	37	chr7	48415951	48415951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgttcaacttcacttgaGcttccagaagtaatgaactc	6	10	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48415951	T	T	48415951	1	4	4	0	1	0	0	0	0	0	0	0	31	986	34	3		3	ABCA13	7	48415951	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	66421	48415951	110722712	1397	3421											
IKZF1	10320	broad.mit.edu	37	chr7	50444306	50444306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaatggggaagaatgtgCggaggatttacgaatgcttg	15	3	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50444306	A	A	50444306	3	1	4	1	0	0	0	0	1	0	0	0	7684	768	27	3	246	3	IKZF1	7	50444306	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2028355	50444306	108694357	1398	3422											
POM121L12	285877	broad.mit.edu	37	chr7	53103526	53103526	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgccagagtccctggccCctgaggtccctgactcagag	13	15	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53103526	G	G	53103526	2	3	4	1	0	0	0	0	0	0	0	1	12336	610	22	4		4	POM121L12	7	53103526	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2659220	53103526	106035137	1399	3423											
EGFR	1956	broad.mit.edu	37	chr7	55214220	55214220	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctctttagcagaacataaAtgcgaagagcacatgcatcc	7	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55214220	T	T	55214220	1	4	4	0	1	0	0	0	0	0	0	0	5007	116	4	5		5	EGFR	7	55214220	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2110694	55214220	103924443	1400	3424											
EGFR	1956	broad.mit.edu	37	chr7	55231427	55231427	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctcttcctcctctcagtGagccaagggagtttgtggag	11	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55231427	C	C	55231427	3	2	4	1	0	0	0	0	1	0	0	0	5007	1304	45	4	1698	4	EGFR	7	55231427	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	17207	55231427	103907236	1401	3425											
ZNF679	168417	broad.mit.edu	37	chr7	63709635	63709635	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcctcgcagtcagctccgGagtctgaggacccaaatcct	9	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63709635	T	T	63709635	1	4	4	0	1	0	0	0	0	0	0	0	18213	1189	41	3		3	ZNF679	7	63709635	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	8478208	63709635	95429028	1402	3426											
ASL	435	broad.mit.edu	37	chr7	65552346	65552346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgcaggcaatcccctgGgtgtggaccgagagctgctc	13	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65552346	T	T	65552346	3	4	4	1	0	0	0	0	1	0	0	0	1048	1232	43	2	658	2	ASL	7	65552346	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1842711	65552346	93586317	1403	3427											
RABGEF1	27342	broad.mit.edu	37	chr7	66262555	66262556	+	Intron	DNP	GG	TT	TT													aatggaagaacacactggggGgaaaataatgcacctgtgtt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	66262556	TT	TT	66262555	1	4	4	0	1	0	0	0	0	0	0	0	13074	1247	43	2		2	RABGEF1	7	66262555	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	710209	66262555	92876108	1404	3428											
AUTS2	26053	broad.mit.edu	37	chr7	69900705	69900705	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacatactcagttcttgCactaacccttattctcttgt	3	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69900705	T	T	69900705	1	4	4	0	1	0	0	0	0	0	0	0	1230	725	25	4		4	AUTS2	7	69900705	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3638150	69900705	89237958	1405	3429											
WBSCR17	64409	broad.mit.edu	37	chr7	70853231	70853231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccccaggtgtaaggagCtcaagtactccaaggacctg	10	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70853231	A	A	70853231	3	1	4	1	0	0	0	0	1	0	0	0	17391	797	28	3	443	3	WBSCR17	7	70853231	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	952526	70853231	88285432	1406	3430											
CALN1	83698	broad.mit.edu	37	chr7	71571324	71571324	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtggtcacatggctggcTttattgcactgcagttattg	11	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71571324	A	A	71571324	1	1	4	0	1	0	0	0	0	0	0	0	2617	1624	56	5		5	CALN1	7	71571324	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	718093	71571324	87567339	1407	3431											
CALN1	83698	broad.mit.edu	37	chr7	71571365	71571365	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgattgcctactgagaactCctaactgctttaaaaacagt	7	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71571365	A	A	71571365	1	1	4	0	1	0	0	0	0	0	0	0	2617	870	30	3		3	CALN1	7	71571365	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	41	71571365	87567298	1408	3432											
TYW1B	441250	broad.mit.edu	37	chr7	72286021	72286021	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aataatggccacaggcagatCcagggacgtaactgcttcag	11	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72286021	G	G	72286021	3	3	4	1	0	0	0	0	1	0	0	0	16945	855	30	4	2001	4	TYW1B	7	72286021	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	714656	72286021	86852642	1409	3433											
FKBP6	8468	broad.mit.edu	37	chr7	72470126	72470126	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacgcccattccaaatattCtgttctcttagaatcagagc	5	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72470126	A	A	72470126	1	1	4	0	1	0	0	0	0	0	0	0	5969	928	32	3		3	FKBP6	7	72470126	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	184105	72470126	86668537	1410	3434											
FKBP6	8468	broad.mit.edu	37	chr7	72744205	72744205	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcatgcggagaggagaGctggccaggtttctgttcaa	15	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72744205	C	C	72744205	3	2	4	1	0	0	0	0	1	0	0	0	5969	962	34	4	378	4	FKBP6	7	72744205	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	274079	72744205	86394458	1411	3435											
WBSCR22	114049	broad.mit.edu	37	chr7	73101311	73101311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttctctttctctgactGccttttctctaatgtagatg	6	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73101311	T	T	73101311	1	4	4	0	1	0	0	0	0	0	0	0	17392	1334	46	3		3	WBSCR22	7	73101311	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	357106	73101311	86037352	1412	3436											
LIMK1	3984	broad.mit.edu	37	chr7	73535415	73535415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggcctgggagacggtgGggccgattcccgggacagcc	17	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73535415	T	T	73535415	1	4	4	0	1	0	0	0	0	0	0	0	8873	1247	43	2		2	LIMK1	7	73535415	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	434104	73535415	85603248	1413	3437											
CLIP2	7461	broad.mit.edu	37	chr7	73811375	73811375	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagccagggctgagtgCagtggttctgtgcccgcctc	17	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73811375	T	T	73811375	1	4	4	0	1	0	0	0	0	0	0	0	3565	725	25	4		4	CLIP2	7	73811375	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	275960	73811375	85327288	1414	3438											
GTF2I	2969	broad.mit.edu	37	chr7	74119614	74119614	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagttttagttgttagatAattgagatatcagaatatta	7	1	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74119614	T	T	74119614	1	4	4	0	1	0	0	0	0	0	0	0	6932	377	13	5		5	GTF2I	7	74119614	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	308239	74119614	85019049	1415	3439											
HIP1	3092	broad.mit.edu	37	chr7	75203140	75203140	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagatgacctggatcagcGgggcgaggcggcactgccct	15	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75203140	A	A	75203140	3	1	4	1	0	0	0	0	1	0	0	0	7181	1116	39	4	2538	4	HIP1	7	75203140	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1083526	75203140	83935523	1416	3440											
RHBDD2	57414	broad.mit.edu	37	chr7	75517556	75517556	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctgcgggcacctccctGggcatccagccccccacgcc	10	21	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75517556	A	A	75517556	2	1	4	1	0	0	0	0	0	0	0	1	13426	1335	47	4		4	RHBDD2	7	75517556	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	314416	75517556	83621107	1417	3441											
POMZP3	22932	broad.mit.edu	37	chr7	76254966	76254966	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctggggcattacttgatgGtgaggacagtgttgagctga	16	5	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76254966	T	T	76254966	3	4	4	1	0	0	0	0	1	0	0	0	12342	1261	44	3	486	3	POMZP3	7	76254966	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	737410	76254966	82883697	1418	3442											
RSBN1L	222194	broad.mit.edu	37	chr7	77402527	77402527	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgagccccgtgagatgctCtttgaagacaggacaagagc	13	9	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77402527	G	G	77402527	2	3	4	1	0	0	0	0	0	0	0	1	13808	900	32	4		4	RSBN1L	7	77402527	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1147561	77402527	81736136	1419	3443											
MAGI2	9863	broad.mit.edu	37	chr7	77756539	77756539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtctgtagtccgacagaGggtactgcctggtgtcgggg	17	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77756539	T	T	77756539	3	4	4	1	0	0	0	0	1	0	0	0	9283	1000	35	2	985	2	MAGI2	7	77756539	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	354012	77756539	81382124	1420	3444											
MAGI2	9863	broad.mit.edu	37	chr7	79082779	79082779	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctctattcggtgctttccCtcttctttggatggagtgtg	10	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79082779	T	T	79082779	1	4	4	0	1	0	0	0	0	0	0	0	9283	696	24	4		4	MAGI2	7	79082779	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	1326240	79082779	80055884	1421	3445											
HGF	3082	broad.mit.edu	37	chr7	81335050	81335050	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatcaatcgtactaacaaAatcatccaggacagcaggcc	6	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81335050	C	C	81335050	3	2	4	1	0	0	0	0	1	0	0	0	7152	14	1	5	421	5	HGF	7	81335050	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2252271	81335050	77803613	1422	3446											
HGF	3082	broad.mit.edu	37	chr7	81346533	81346533	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatttcacaagacaccaatcCctaactgtacttacaacgag	4	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81346533	G	G	81346533	1	3	4	0	1	0	0	0	0	0	0	0	7152	638	22	4		4	HGF	7	81346533	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	11483	81346533	77792130	1423	3447											
HGF	3082	broad.mit.edu	37	chr7	81355333	81355333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaattttctcgtaggtcCctattgagaataagcatgtt	8	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81355333	A	A	81355333	3	1	4	1	0	0	0	0	1	0	0	0	7152	637	22	2	1185	2	HGF	7	81355333	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	8800	81355333	77783330	1424	3448											
CACNA2D1	781	broad.mit.edu	37	chr7	81611853	81611853	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggcctagctactgatagAagatgtatcaaaaatacaac	8	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81611853	T	T	81611853	1	4	4	0	1	0	0	0	0	0	0	0	2574	261	9	5		5	CACNA2D1	7	81611853	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	256520	81611853	77526810	1425	3449											
CACNA2D1	781	broad.mit.edu	37	chr7	81689893	81689893	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactcatcatgtatttaatCaagaacatcataaggaaaga	5	6	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81689893	A	A	81689893	1	1	4	0	1	0	0	0	0	0	0	0	2574	841	29	3		3	CACNA2D1	7	81689893	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	78040	81689893	77448770	1426	3450											
PCLO	27445	broad.mit.edu	37	chr7	82474642	82474642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaccctggttgcccagggCtgggaacggaactggatcct	16	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82474642	A	A	82474642	3	1	4	1	0	0	0	0	1	0	0	0	11677	797	28	3	1506	3	PCLO	7	82474642	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	784749	82474642	76664021	1427	3451											
PCLO	27445	broad.mit.edu	37	chr7	82476482	82476482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatatttctgcttccccaCtttgctgactaatgatactc	4	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82476482	A	A	82476482	3	1	4	1	0	0	0	0	1	0	0	0	11677	565	20	3	1769	3	PCLO	7	82476482	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1840	82476482	76662181	1428	3452											
PCLO	27445	broad.mit.edu	37	chr7	82579983	82579983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgaatcttttgctcctcCagctgctggtgaagctgttg	11	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82579983	A	A	82579983	2	1	4	1	0	0	0	0	0	0	0	1	11677	581	21	2		2	PCLO	7	82579983	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	103501	82579983	76558680	1429	3453											
SEMA3A	10371	broad.mit.edu	37	chr7	83689790	83689790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactacgcacctattaaaaGggatgctgtcagcagcttag	10	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83689790	T	T	83689790	3	4	4	1	0	0	0	0	1	0	0	0	14137	1000	35	2	1829	2	SEMA3A	7	83689790	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1109807	83689790	75448873	1430	3454											
DMTF1	9988	broad.mit.edu	37	chr7	86815334	86815334	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttaagctcctccccttttCttaccatatttactccttag	2	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86815334	G	G	86815334	1	3	4	0	1	0	0	0	0	0	0	0	4632	928	32	4		4	DMTF1	7	86815334	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3125544	86815334	72323329	1431	3455											
ABCB1	5243	broad.mit.edu	37	chr7	87215004	87215004	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaatagcgaaactaaaaaGagagaaaaaagaatagcaga	9	3	0	5	rs34455904		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87215004	C	C	87215004	1	2	4	0	1	0	0	0	0	0	0	0	40	957	33	4		4	ABCB1	7	87215004	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	399670	87215004	71923659	1432	3456											
ADAM22	53616	broad.mit.edu	37	chr7	87746190	87746190	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtaatttatttaatgcCttagaactaatctatatttg	4	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87746190	T	T	87746190	1	4	4	0	1	0	0	0	0	0	0	0	244	696	24	4		4	ADAM22	7	87746190	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	531186	87746190	71392473	1433	3457											
ADAM22	53616	broad.mit.edu	37	chr7	87755088	87755088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtttgggaatttgtcaGggtgtgataaaccgtaaggg	14	3	1	1	rs138665210	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87755088	T	T	87755088	1	4	4	0	1	0	0	0	0	0	0	0	244	1015	35	2		2	ADAM22	7	87755088	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	8898	87755088	71383575	1434	3458											
MGC26647	219557	broad.mit.edu	37	chr7	88424345	88424345	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacctctttactgatgaactCgtgtttttatttcttctgac	5	9	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88424345	G	G	88424345	1	3	4	0	1	0	0	0	0	0	0	0	9643	899	31	4		4	MGC26647	7	88424345	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	669257	88424345	70714318	1435	3459											
ANKIB1	54467	broad.mit.edu	37	chr7	91974260	91974260	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctttcagaagtacatttCtgtttaaatcattgttcttc	4	8	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91974260	G	G	91974260	1	3	4	0	1	0	0	0	0	0	0	0	630	928	32	4		4	ANKIB1	7	91974260	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3549915	91974260	67164403	1436	3460											
GATAD1	57798	broad.mit.edu	37	chr7	92083958	92083958	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggctcattcctaccctctCtagccccagagaccaatttg	7	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92083958	G	G	92083958	3	3	4	1	0	0	0	0	1	0	0	0	6321	913	32	4	592	4	GATAD1	7	92083958	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	109698	92083958	67054705	1437	3461											
CALCR	799	broad.mit.edu	37	chr7	93067561	93067561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggtaatagcatggataGtggttggcaccagcgggaac	14	9	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93067561	T	T	93067561	3	4	4	1	0	0	0	0	1	0	0	0	2605	1029	36	3	620	3	CALCR	7	93067561	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	983603	93067561	66071102	1438	3462											
CALCR	799	broad.mit.edu	37	chr7	93116194	93116194	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactcaaaacattcctccttAttcagcattcttcattagca	2	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93116194	T	T	93116194	1	4	4	0	1	0	0	0	0	0	0	0	2605	464	16	5		5	CALCR	7	93116194	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	48633	93116194	66022469	1439	3463											
CASD1	64921	broad.mit.edu	37	chr7	94185070	94185070	+	Frame_Shift_Del	DEL	G	-	-													caagataaatcaaaacattaGgttccaaaaattctaaaaaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94185070	-	-	94185070	7	5	4	1	0	1	0	1	0	0	0	0	2690	995	35	0	2464	0	CASD1	7	94185070	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	1068876	94185070	64953593	1440	3464											
SLC25A13	10165	broad.mit.edu	37	chr7	95799303	95799303	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctgttgaccatggtagtGatatatatgtgaaacaagtc	9	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95799303	A	A	95799303	1	1	4	0	1	0	0	0	0	0	0	0	14589	1305	45	4		4	SLC25A13	7	95799303	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1614233	95799303	63339360	1441	3465											
SHFM1	7979	broad.mit.edu	37	chr7	96324041	96324041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttaagaggttaatcatcTatgtaaattacatattccat	4	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96324041	C	C	96324041	1	2	4	0	1	0	0	0	0	0	0	0	14391	1537	53	5		5	SHFM1	7	96324041	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	524738	96324041	62814622	1442	3466											
DLX6	1750	broad.mit.edu	37	chr7	96637038	96637038	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcctcggaccatttattcCagcctgcagctccaggcttt	8	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96637038	G	G	96637038	2	3	4	1	0	0	0	0	0	0	0	1	4615	581	21	4		4	DLX6	7	96637038	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	312997	96637038	62501625	1443	3467											
ASNS	440	broad.mit.edu	37	chr7	97488585	97488585	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtacatcccgacagtgatGatatttaaccatttccacgg	9	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97488585	C	C	97488585	3	2	4	1	0	0	0	0	1	0	0	0	1052	1290	45	4	1108	4	ASNS	7	97488585	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	851547	97488585	61650078	1444	3468											
TRRAP	8295	broad.mit.edu	37	chr7	98589832	98589833	+	Missense_Mutation	DNP	CG	AT	AT													tgaccctgaaaatagaacagCgggaacgctacaagagcggt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	98589833	AT	AT	98589832	3	1	4	1	0	0	0	0	1	0	0	0	16726	759	27	3	10000	3	TRRAP	7	98589832	Missense_Mutation	DNP	CG	TCGA-05-4382-01A-01D-1265-08	1101247	98589832	60548831	1445	3469											
TRRAP	8295	broad.mit.edu	37	chr7	98596555	98596555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggtcagtctgcacaagGtacagaaggcaaagttacag	13	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98596555	T	T	98596555	1	4	4	0	1	0	0	0	0	0	0	0	16726	1276	44	3		3	TRRAP	7	98596555	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	6723	98596555	60542108	1446	3470											
AZGP1	563	broad.mit.edu	37	chr7	99573496	99573496	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctgcatccagcctgtctCccagccacatgtcctgttcc	7	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99573496	A	A	99573496	1	1	4	0	1	0	0	0	0	0	0	0	1244	870	30	3		3	AZGP1	7	99573496	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	976941	99573496	59565167	1447	3471											
GAL3ST4	79690	broad.mit.edu	37	chr7	99764641	99764641	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagtgcaaagccaatggtCatgaagactcccagagccac	11	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99764641	T	T	99764641	3	4	4	1	0	0	0	0	1	0	0	0	6262	826	29	4	1394	4	GAL3ST4	7	99764641	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	191145	99764641	59374022	1448	3472											
STAG3	10734	broad.mit.edu	37	chr7	99795007	99795007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatattttacctagtgacCaatgatgaacccatcaaggc	8	9	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99795007	A	A	99795007	1	1	4	0	1	0	0	0	0	0	0	0	15362	609	21	2		2	STAG3	7	99795007	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	30366	99795007	59343656	1449	3473											
TSC22D4	81628	broad.mit.edu	37	chr7	100075602	100075602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctgggctcccagggccCtcatagtccgtggtgacgct	13	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100075602	A	A	100075602	3	1	4	1	0	0	0	0	1	0	0	0	16735	680	24	2	1143	2	TSC22D4	7	100075602	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	280595	100075602	59063061	1450	3474											
FBXO24	26261	broad.mit.edu	37	chr7	100190547	100190547	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgcagtctagtgggcagCgggtcttcaagatgacattc	12	9	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100190547	T	T	100190547	3	4	4	1	0	0	0	0	1	0	0	0	5792	759	27	4	875	4	FBXO24	7	100190547	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	114945	100190547	58948116	1451	3475											
ZAN	7455	broad.mit.edu	37	chr7	100349995	100349995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaacccaccatctcccCagaaaaacccaccaccccca	2	20	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349995	A	A	100349995	3	1	4	1	0	0	0	0	1	0	0	0	17640	594	21	2	2317	2	ZAN	7	100349995	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	159448	100349995	58788668	1452	3476											
MUC17	140453	broad.mit.edu	37	chr7	100675863	100675863	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgctaacctcaactcttaGtgaaggaagcactccattaa	6	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100675863	C	C	100675863	3	2	4	1	0	0	0	0	1	0	0	0	10068	1029	36	4	1176	4	MUC17	7	100675863	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	325868	100675863	58462800	1453	3477											
MYL10	93408	broad.mit.edu	37	chr7	101256815	101256815	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtagtccaggttgccGcacacatctgggggaaatgc	12	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101256815	A	A	101256815	2	1	4	1	0	0	0	0	0	0	0	1	10138	1079	38	4		4	MYL10	7	101256815	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	580952	101256815	57881848	1454	3478											
RELN	5649	broad.mit.edu	37	chr7	103138649	103138649	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccaccttctaaggacatCcataagtcaggtttgatttc	6	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103138649	T	T	103138649	4	4	4	1	0	0	0	0	0	1	0	0	13328	856	30	4	1712	4	RELN	7	103138649	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1881834	103138649	56000014	1455	3479											
RELN	5649	broad.mit.edu	37	chr7	103162509	103162509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccgacgccacggctccaCacactgtactcaatttccct	5	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103162509	A	A	103162509	3	1	4	1	0	0	0	0	1	0	0	0	13328	478	17	3	2826	3	RELN	7	103162509	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	23860	103162509	55976154	1456	3480											
RELN	5649	broad.mit.edu	37	chr7	103252227	103252227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatagcgcatacttgagGcaagtttagaatctcctgta	8	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103252227	T	T	103252227	3	4	4	1	0	0	0	0	1	0	0	0	13328	1203	42	3	7836	3	RELN	7	103252227	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	89718	103252227	55886436	1457	3481											
RELN	5649	broad.mit.edu	37	chr7	103368501	103368501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataagaaaaacttttgttgGcaaaaagctcagtaaatact	6	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103368501	T	T	103368501	1	4	4	0	1	0	0	0	0	0	0	0	13328	1218	42	3		3	RELN	7	103368501	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	116274	103368501	55770162	1458	3482											
SRPK2	6733	broad.mit.edu	37	chr7	104785767	104785767	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtactcactaaaataaaaTcaaacaaaatctgtatttag	3	8	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104785767	C	C	104785767	1	2	4	0	1	0	0	0	0	0	0	0	15278	1450	50	5		5	SRPK2	7	104785767	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1417266	104785767	54352896	1459	3483											
CDHR3	222256	broad.mit.edu	37	chr7	105663038	105663038	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaatggcaaccatgggctgGactggagtagctgcagggtg	16	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105663038	T	T	105663038	1	4	4	0	1	0	0	0	0	0	0	0	3150	1189	41	3		3	CDHR3	7	105663038	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	877271	105663038	53475625	1460	3484											
PIK3CG	5294	broad.mit.edu	37	chr7	106522623	106522623	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatctatgcctcctgccatAtggttgcatttcaactggtg	10	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106522623	G	G	106522623	3	3	4	1	0	0	0	0	1	0	0	0	12011	449	16	5	2622	5	PIK3CG	7	106522623	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	859585	106522623	52616040	1461	3485											
GPR22	2845	broad.mit.edu	37	chr7	107114721	107114721	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgcatgaaatccaacttAatcaactctgtcagtaacat	4	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107114721	T	T	107114721	3	4	4	1	0	0	0	0	1	0	0	0	6747	359	13	5	218	5	GPR22	7	107114721	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	592098	107114721	52023942	1462	3486											
BCAP29	55973	broad.mit.edu	37	chr7	107224400	107224400	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaggctttccttaccattAtcatcctattgattgttcta	4	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107224400	T	T	107224400	3	4	4	1	0	0	0	0	1	0	0	0	1351	449	16	5	172	5	BCAP29	7	107224400	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	109679	107224400	51914263	1463	3487											
SLC26A3	1811	broad.mit.edu	37	chr7	107431449	107431449	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagagatgtgtaacagtcaaGatgaacagattgaggtgggc	15	4	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107431449	T	T	107431449	1	4	4	0	1	0	0	0	0	0	0	0	14632	957	33	3		3	SLC26A3	7	107431449	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	207049	107431449	51707214	1464	3488											
LAMB4	22798	broad.mit.edu	37	chr7	107671272	107671272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaagactcccagcctgGtgttgggcagattcagcctg	11	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107671272	T	T	107671272	3	4	4	1	0	0	0	0	1	0	0	0	8685	1252	44	3	326	3	LAMB4	7	107671272	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	239823	107671272	51467391	1465	3489											
LAMB4	22798	broad.mit.edu	37	chr7	107732065	107732065	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagggaaagtaaatgaaatAcgaaccaaaggcgccagtcc	11	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107732065	T	T	107732065	1	4	4	0	1	0	0	0	0	0	0	0	8685	406	14	5		5	LAMB4	7	107732065	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	60793	107732065	51406598	1466	3490											
NRCAM	4897	broad.mit.edu	37	chr7	107822224	107822224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaagtggcattcgctgcaGcccttactaaataaagccac	8	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107822224	T	T	107822224	1	4	4	0	1	0	0	0	0	0	0	0	10739	986	34	3		3	NRCAM	7	107822224	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	90159	107822224	51316439	1467	3491											
NRCAM	4897	broad.mit.edu	37	chr7	107880434	107880434	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttccagtgcactaatcatCtggcacaggaagagaatcag	9	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107880434	G	G	107880434	3	3	4	1	0	0	0	0	1	0	0	0	10739	912	32	4	3989	4	NRCAM	7	107880434	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	58210	107880434	51258229	1468	3492											
IMMP2L	83943	broad.mit.edu	37	chr7	110526731	110526731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgggggactttgacatacCggtttttgtgtcctatggtt	12	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110526731	A	A	110526731	3	1	4	1	0	0	0	0	1	0	0	0	7787	652	23	1	209	1	IMMP2L	7	110526731	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2646297	110526731	48611932	1469	3493											
LRRN3	54674	broad.mit.edu	37	chr7	110764016	110764016	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccagattcactgttttgCgtggacccacctgaattcca	9	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110764016	G	G	110764016	3	3	4	1	0	0	0	0	1	0	0	0	9123	776	27	4	1190	4	LRRN3	7	110764016	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	237285	110764016	48374647	1470	3494											
IMMP2L	83943	broad.mit.edu	37	chr7	111161579	111161579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagacataaaaacagtacaTgaaaagtaagagttaccgaa	7	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111161579	A	A	111161579	1	1	4	0	1	0	0	0	0	0	0	0	7787	1479	51	5		5	IMMP2L	7	111161579	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	397563	111161579	47977084	1471	3495											
GPR85	54329	broad.mit.edu	37	chr7	112723879	112723879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacaggccaccaggtaggGgccccacaaggttagaaaca	11	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112723879	T	T	112723879	3	4	4	1	0	0	0	0	1	0	0	0	6780	1232	43	2	218	2	GPR85	7	112723879	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1562300	112723879	46414784	1472	3496											
TFEC	22797	broad.mit.edu	37	chr7	115614261	115614261	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggagagtctgctccttccTctttaaaacttgattccata	7	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115614261	A	A	115614261	3	1	4	1	0	0	0	0	1	0	0	0	15925	1551	54	5	837	5	TFEC	7	115614261	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2890382	115614261	43524402	1473	3497											
PTPRZ1	5803	broad.mit.edu	37	chr7	121650958	121650958	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acccagagacaataacatatGatgtccttataccagaatct	5	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121650958	C	C	121650958	3	2	4	1	0	0	0	0	1	0	0	0	12922	1290	45	4	1904	4	PTPRZ1	7	121650958	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6036697	121650958	37487705	1474	3498											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651806	121651806	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtgttctttataaaacGcttatgttttctcaagttga	7	6	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121651806	T	T	121651806	2	4	4	1	0	0	0	0	0	0	0	1	12922	1074	38	3		3	PTPRZ1	7	121651806	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	848	121651806	37486857	1475	3499											
PTPRZ1	5803	broad.mit.edu	37	chr7	121676791	121676791	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catattagactgaattattaTaccataatgccatacatgca	4	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121676791	C	C	121676791	1	2	4	0	1	0	0	0	0	0	0	0	12922	1421	49	5		5	PTPRZ1	7	121676791	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	24985	121676791	37461872	1476	3500											
PTPRZ1	5803	broad.mit.edu	37	chr7	121693935	121693935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaggcatacgccagtgCtgtttttgtcttctctttgg	9	8	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121693935	A	A	121693935	1	1	4	0	1	0	0	0	0	0	0	0	12922	812	28	3		3	PTPRZ1	7	121693935	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	17144	121693935	37444728	1477	3501											
FEZF1	389549	broad.mit.edu	37	chr7	121942191	121942191	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgccagctggcgtgcgggCcagccccaggctgctgtcgt	15	15	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121942191	T	T	121942191	3	4	4	1	0	0	0	0	1	0	0	0	5882	739	26	4	143	4	FEZF1	7	121942191	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	248256	121942191	37196472	1478	3502											
RNF133	168433	broad.mit.edu	37	chr7	122338605	122338605	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agatgatcactccactggctCccttctcagttgccacttta	6	14	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122338605	G	G	122338605	3	3	4	1	0	0	0	0	1	0	0	0	13550	855	30	4	766	4	RNF133	7	122338605	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	396414	122338605	36800058	1479	3503											
TAS2R16	50833	broad.mit.edu	37	chr7	122635593	122635593	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgcagccattctctgccCagcactgcaacaattaggct	7	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122635593	A	A	122635593	2	1	4	1	0	0	0	0	0	0	0	1	15688	581	21	2		2	TAS2R16	7	122635593	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	296988	122635593	36503070	1480	3504											
LMOD2	442721	broad.mit.edu	37	chr7	123302840	123302841	+	Missense_Mutation	DNP	CC	AA	AA													aggcactcaccctggtcatcCccaaaactccccaaaaaagt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	123302841	AA	AA	123302840	3	1	4	1	0	0	0	0	1	0	0	0	8931	610	22	2	1206	2	LMOD2	7	123302840	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	667247	123302840	35835823	1481	3505											
POT1	25913	broad.mit.edu	37	chr7	124467351	124467351	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatattggaggggtacaaTacccagtgctagtgaaggaa	12	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124467351	A	A	124467351	3	1	4	1	0	0	0	0	1	0	0	0	12355	1406	49	5	313	5	POT1	7	124467351	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1164511	124467351	34671312	1482	3506											
POT1	25913	broad.mit.edu	37	chr7	124532324	124532324	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttttaatacctaccagtTcctttgcttagatatggggg	9	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124532324	A	A	124532324	2	1	4	1	0	0	0	0	0	0	0	1	12355	1770	62	5		5	POT1	7	124532324	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	64973	124532324	34606339	1483	3507											
GRM8	2918	broad.mit.edu	37	chr7	126249334	126249334	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttatggggaaaacctattCtagcaaaagttatacactta	6	6	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126249334	A	A	126249334	1	1	4	0	1	0	0	0	0	0	0	0	6869	928	32	3		3	GRM8	7	126249334	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1717010	126249334	32889329	1484	3508											
IMPDH1	3614	broad.mit.edu	37	chr7	128033139	128033139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtggaccctgctccttcCcaaaaccctttccccagggc	8	17	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128033139	A	A	128033139	1	1	4	0	1	0	0	0	0	0	0	0	7796	638	22	2		2	IMPDH1	7	128033139	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1783805	128033139	31105524	1485	3509											
FLNC	2318	broad.mit.edu	37	chr7	128489091	128489091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccagcccctcaaagcccCtccagaaccctggcctggtc	7	21	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128489091	A	A	128489091	1	1	4	0	1	0	0	0	0	0	0	0	5993	696	24	2		2	FLNC	7	128489091	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	455952	128489091	30649572	1486	3510											
FLNC	2318	broad.mit.edu	37	chr7	128494826	128494826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactaccttgcctgtcccCagccgagttcagcatctgga	8	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128494826	A	A	128494826	1	1	4	0	1	0	0	0	0	0	0	0	5993	609	21	2		2	FLNC	7	128494826	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5735	128494826	30643837	1487	3511											
TNPO3	23534	broad.mit.edu	37	chr7	128622270	128622270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcatttgagcctttaacCcaagtaaggcatccagagtc	8	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128622270	A	A	128622270	1	1	4	0	1	0	0	0	0	0	0	0	16460	638	22	2		2	TNPO3	7	128622270	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	127444	128622270	30516393	1488	3512											
TNPO3	23534	broad.mit.edu	37	chr7	128629892	128629892	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacaacatattgtttactctCagtttctataaacactccgt	3	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128629892	G	G	128629892	1	3	4	0	1	0	0	0	0	0	0	0	16460	841	29	4		4	TNPO3	7	128629892	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	7622	128629892	30508771	1489	3513											
AHCYL2	23382	broad.mit.edu	37	chr7	129050057	129050057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcccggctcttgggatcaCtgctaagcccaatggctcct	10	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129050057	A	A	129050057	1	1	4	0	1	0	0	0	0	0	0	0	411	580	20	3		3	AHCYL2	7	129050057	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	420165	129050057	30088606	1490	3514											
ZC3HC1	51530	broad.mit.edu	37	chr7	129688778	129688778	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcttaccaaggttttattCttaagtttaaagcatcacag	5	7	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129688778	G	G	129688778	1	3	4	0	1	0	0	0	0	0	0	0	17703	928	32	4		4	ZC3HC1	7	129688778	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	638721	129688778	29449885	1491	3515											
C7orf45	136263	broad.mit.edu	37	chr7	129855823	129855823	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggttgttagcaagcaaagAgacttcctgtaagcggcaaa	11	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129855823	T	T	129855823	3	4	4	1	0	0	0	0	1	0	0	0	2420	304	11	5	258	5	C7orf45	7	129855823	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	167045	129855823	29282840	1492	3516											
KLF14	136259	broad.mit.edu	37	chr7	130418206	130418206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagggcgctcacccgtgtGggtgcgctggtgggacttga	18	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130418206	T	T	130418206	3	4	4	1	0	0	0	0	1	0	0	0	8413	1348	47	2	320	2	KLF14	7	130418206	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	562383	130418206	28720457	1493	3517											
PLXNA4	91584	broad.mit.edu	37	chr7	131849037	131849037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggagaagaggggctccCcagcacactcctggaggtga	15	11	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131849037	A	A	131849037	3	1	4	1	0	0	0	0	1	0	0	0	12217	623	22	2	1356	2	PLXNA4	7	131849037	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1430831	131849037	27289626	1494	3518											
PLXNA4	91584	broad.mit.edu	37	chr7	131866287	131866288	+	Missense_Mutation	DNP	GG	TT	TT													aggatgaagccaaactcctcGggcctctcggtcaggtctga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	131866288	TT	TT	131866287	3	4	4	1	0	0	0	0	1	0	0	0	12217	1103	39	1	2399	1	PLXNA4	7	131866287	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	17250	131866287	27272376	1495	3519											
PLXNA4	91584	broad.mit.edu	37	chr7	131913153	131913153	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgggatggaccgtcagCcggacacactgcttcatctc	11	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131913153	A	A	131913153	2	1	4	1	0	0	0	0	0	0	0	1	12217	726	26	3		3	PLXNA4	7	131913153	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	46866	131913153	27225510	1496	3520											
AKR1B10	57016	broad.mit.edu	37	chr7	134223072	134223072	+	Intron	DEL	G	-	-													ctggtattcctcagtggagtGggggacaggcagaccttctc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134223072	-	-	134223072	6	5	4	0	1	1	0	1	0	0	0	0	467	1363	47	0		0	AKR1B10	7	134223072	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	2309919	134223072	24915591	1497	3521											
STRA8	346673	broad.mit.edu	37	chr7	134928142	134928142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagaaagaatatgccagCatgtattctggaaatgacag	10	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134928142	A	A	134928142	3	1	4	1	0	0	0	0	1	0	0	0	15441	709	25	3	413	3	STRA8	7	134928142	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	705070	134928142	24210521	1498	3522											
SLC13A4	26266	broad.mit.edu	37	chr7	135390716	135390716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtccaagagctgggatGggaaagaggagagagggaag	19	4	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135390716	T	T	135390716	1	4	4	0	1	0	0	0	0	0	0	0	14507	1363	47	2		2	SLC13A4	7	135390716	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	462574	135390716	23747947	1499	3523											
DGKI	9162	broad.mit.edu	37	chr7	137293720	137293720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattactcacctggttgcCtccactcttgggattcacaa	6	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137293720	A	A	137293720	3	1	4	1	0	0	0	0	1	0	0	0	4511	681	24	2	2138	2	DGKI	7	137293720	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1903004	137293720	21844943	1500	3524											
DGKI	9162	broad.mit.edu	37	chr7	137406807	137406807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggctgatgctggtggCaaggtgaaaaagggtaacct	15	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137406807	A	A	137406807	1	1	4	0	1	0	0	0	0	0	0	0	4511	725	25	3		3	DGKI	7	137406807	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	113087	137406807	21731856	1501	3525											
CREB3L2	64764	broad.mit.edu	37	chr7	137613183	137613183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagataccctacgcacatacCaaatacctcatccactgctc	3	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137613183	A	A	137613183	1	1	4	0	1	0	0	0	0	0	0	0	3889	609	21	2		2	CREB3L2	7	137613183	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	206376	137613183	21525480	1502	3526											
AKR1D1	6718	broad.mit.edu	37	chr7	137732499	137732499	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggaagatctgtttcctgGtcagtctggtggaataagaa	12	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137732499	A	A	137732499	1	1	4	0	1	0	0	0	0	0	0	0	473	1276	44	4		4	AKR1D1	7	137732499	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	119316	137732499	21406164	1503	3527											
TRIM24	8805	broad.mit.edu	37	chr7	138235712	138235712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatatgattgtttattgtGtattgatgtacataccagag	8	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138235712	T	T	138235712	1	4	4	0	1	0	0	0	0	0	0	0	16622	1392	48	3		3	TRIM24	7	138235712	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	503213	138235712	20902951	1504	3528											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138429863	138429863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccatctctgtctgtcaaCtcacttccatgtgccgtttc	5	15	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138429863	A	A	138429863	1	1	4	0	1	0	0	0	0	0	0	0	1174	580	20	3		3	ATP6V0A4	7	138429863	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	194151	138429863	20708800	1505	3529											
KIAA1549	57670	broad.mit.edu	37	chr7	138536986	138536986	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccttggcaatggacccgtCgggggagtcattccatagtc	12	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138536986	A	A	138536986	2	1	4	1	0	0	0	0	0	0	0	1	8314	871	31	3		3	KIAA1549	7	138536986	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	107123	138536986	20601677	1506	3530											
KIAA1549	57670	broad.mit.edu	37	chr7	138593715	138593715	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagggctaaagccttctgctCtgcattcagtgatattctca	8	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138593715	T	T	138593715	1	4	4	0	1	0	0	0	0	0	0	0	8314	928	32	4		4	KIAA1549	7	138593715	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	56729	138593715	20544948	1507	3531											
HIPK2	28996	broad.mit.edu	37	chr7	139416276	139416276	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagcacctcatgctgcacCagctgatagtcgccctcgct	8	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139416276	G	G	139416276	2	3	4	1	0	0	0	0	0	0	0	1	7184	581	21	4		4	HIPK2	7	139416276	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	822561	139416276	19722387	1508	3532											
BRAF	673	broad.mit.edu	37	chr7	140453096	140453096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacaaaatggatccagaCaactgttcaaactgatggga	8	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140453096	A	A	140453096	3	1	4	1	0	0	0	0	1	0	0	0	1505	477	17	3	477	3	BRAF	7	140453096	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1036820	140453096	18685567	1509	3533											
BRAF	673	broad.mit.edu	37	chr7	140501433	140501433	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaactgacgtatctactctCttgtttaaaataacaaagtt	5	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140501433	A	A	140501433	1	1	4	0	1	0	0	0	0	0	0	0	1505	928	32	3		3	BRAF	7	140501433	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	48337	140501433	18637230	1510	3534											
WEE2	494551	broad.mit.edu	37	chr7	141430062	141430062	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctaatgccactgatcaatAacttatttacttctcacact	2	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141430062	G	G	141430062	1	3	4	0	1	0	0	0	0	0	0	0	17472	377	13	5		5	WEE2	7	141430062	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	928629	141430062	17708601	1511	3535											
MGAM	8972	broad.mit.edu	37	chr7	141756746	141756746	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagcagtacactgaggtaGggggaaatccaattgtttat	11	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141756746	A	A	141756746	1	1	4	0	1	0	0	0	0	0	0	0	9634	1015	35	4		4	MGAM	7	141756746	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	326684	141756746	17381917	1512	3536											
TRYX3	136541	broad.mit.edu	37	chr7	141955042	141955042	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtgactgagaagtgtggaTgatgaatcatcttctcatag	11	5	3	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141955042	A	A	141955042	3	1	4	1	0	0	0	0	1	0	0	0	16729	1464	51	5	468	5	TRYX3	7	141955042	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	198296	141955042	17183621	1513	3537											
OR6V1	346517	broad.mit.edu	37	chr7	142749798	142749798	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagacatggcccttgatcgcTttgtggccatctgccaccca	9	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142749798	A	A	142749798	3	1	4	1	0	0	0	0	1	0	0	0	11305	1609	56	5	363	5	OR6V1	7	142749798	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	794756	142749798	16388865	1514	3538											
PIP	5304	broad.mit.edu	37	chr7	142836648	142836648	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtcgttgatgttattcgGgaattaggcatctgccctga	12	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142836648	T	T	142836648	2	4	4	1	0	0	0	0	0	0	0	1	12030	1219	43	2		2	PIP	7	142836648	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	86850	142836648	16302015	1515	3539											
TMEM139	135932	broad.mit.edu	37	chr7	142983814	142983814	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgatctgcagagcttggcGgcagtccccacattagagcc	11	14	1	3	rs146576406		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142983814	A	A	142983814	2	1	4	1	0	0	0	0	0	0	0	1	16177	1103	39	4		4	TMEM139	7	142983814	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	147166	142983814	16154849	1516	3540											
CLCN1	1180	broad.mit.edu	37	chr7	143028259	143028259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaatcctgaaaactgccCacctctgtttccctgttggg	7	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143028259	A	A	143028259	1	1	4	0	1	0	0	0	0	0	0	0	3493	609	21	2		2	CLCN1	7	143028259	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	44445	143028259	16110404	1517	3541											
EPHA1	2041	broad.mit.edu	37	chr7	143092462	143092462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcgggtggctaaactggCccatgatagttgcctctcga	12	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143092462	A	A	143092462	3	1	4	1	0	0	0	0	1	0	0	0	5207	739	26	3	925	3	EPHA1	7	143092462	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	64203	143092462	16046201	1518	3542											
OR2F2	135948	broad.mit.edu	37	chr7	143632310	143632310	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctttctacagattaataTtcctcacatttttaaatgga	3	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143632310	A	A	143632310	1	1	4	0	1	0	0	0	0	0	0	0	11091	1508	52	5		5	OR2F2	7	143632310	5'Flank	SNP	T	TCGA-05-4382-01A-01D-1265-08	539848	143632310	15506353	1519	3543											
OR2A5	393046	broad.mit.edu	37	chr7	143748015	143748015	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtgggccccatgaaaTcaaccacttcttctgtgaaa	7	12	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143748015	A	A	143748015	3	1	4	1	0	0	0	0	1	0	0	0	11075	1435	50	5	523	5	OR2A5	7	143748015	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	115705	143748015	15390648	1520	3544											
OR2A25	392138	broad.mit.edu	37	chr7	143771324	143771324	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagggaaatggggggaaaTcagacttccatcacagagtt	12	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143771324	A	A	143771324	3	1	4	1	0	0	0	0	1	0	0	0	11072	1432	50	5	14	5	OR2A25	7	143771324	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	23309	143771324	15367339	1521	3545											
TPK1	27010	broad.mit.edu	37	chr7	144344907	144344907	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaataccaccaattttgTagaccccctggaggggcagg	10	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144344907	C	C	144344907	1	2	4	0	1	0	0	0	0	0	0	0	16528	1653	57	5		5	TPK1	7	144344907	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	573583	144344907	14793756	1522	3546											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741063	146741063	+	Frame_Shift_Del	DEL	C	-	-													attacagcatccgattattgCccgctatgtgcgcatagtgc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	146741063	-	-	146741063	7	5	4	1	0	1	0	1	0	0	0	0	3679	739	26	0	481	0	CNTNAP2	7	146741063	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	2396156	146741063	12397600	1523	3547											
SSPO	23145	broad.mit.edu	37	chr7	149509779	149509779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacccaaggcccactttgcGggagggcagggtgtggattt	16	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149509779	T	T	149509779	1	4	4	0	1	0	0	0	0	0	0	0	15307	1131	39	1		1	SSPO	7	149509779	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2768716	149509779	9628884	1524	3548											
ZNF862	643641	broad.mit.edu	37	chr7	149557754	149557754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccatgataaatcatctcGgttagtcagaggttacacgg	9	9	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149557754	T	T	149557754	3	4	4	1	0	0	0	0	1	0	0	0	18324	1116	39	1	1531	1	ZNF862	7	149557754	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	47975	149557754	9580909	1525	3549											
GIMAP1	170575	broad.mit.edu	37	chr7	150416163	150416163	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaggaagatggcgacagatGaagaaaatgtctatggtaag	14	3	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150416163	T	T	150416163	4	4	4	1	0	0	0	0	0	1	0	0	6443	1291	45	3	30	3	GIMAP1	7	150416163	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	858409	150416163	8722500	1526	3550											
GIMAP1	170575	broad.mit.edu	37	chr7	150417496	150417496	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagcaggcggtgaggcaggTgagggacatgttcggggagg	21	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150417496	A	A	150417496	3	1	4	1	0	0	0	0	1	0	0	0	6443	1696	59	5	410	5	GIMAP1	7	150417496	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1333	150417496	8721167	1527	3551											
KCNH2	3757	broad.mit.edu	37	chr7	150647499	150647499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggcactcagggaagcCcttcagcacctgggggcagg	15	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150647499	A	A	150647499	3	1	4	1	0	0	0	0	1	0	0	0	8102	623	22	2	1621	2	KCNH2	7	150647499	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	230003	150647499	8491164	1528	3552											
NOS3	4846	broad.mit.edu	37	chr7	150696468	150696468	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtgaggtgcgggatgGggctcgggcaccgaatgcac	20	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150696468	T	T	150696468	1	4	4	0	1	0	0	0	0	0	0	0	10639	1247	43	2		2	NOS3	7	150696468	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	48969	150696468	8442195	1529	3553											
ABCB8	11194	broad.mit.edu	37	chr7	150731543	150731543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggagtggggctggggaccGccgaggagccacccgaggca	20	12	0	0	rs149180972	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150731543	T	T	150731543	1	4	4	0	1	0	0	0	0	0	0	0	47	1102	38	3		3	ABCB8	7	150731543	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	35075	150731543	8407120	1530	3554											
TMUB1	83590	broad.mit.edu	37	chr7	150779566	150779566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcggtgtgcgttgagaCccaggcaagggccagcacca	14	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150779566	A	A	150779566	3	1	4	1	0	0	0	0	1	0	0	0	16387	507	18	3	663	3	TMUB1	7	150779566	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	48023	150779566	8359097	1531	3555											
MLL3	58508	broad.mit.edu	37	chr7	151902375	151902375	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacatttccacagtacacagGataaaactgctttatcttga	5	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151902375	C	C	151902375	1	2	4	0	1	0	0	0	0	0	0	0	9715	1189	41	4		4	MLL3	7	151902375	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1122809	151902375	7236288	1532	3556											
MLL3	58508	broad.mit.edu	37	chr7	152012126	152012126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaggagaaactgttcaaCaagaacaatcccatttgaaa	7	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152012126	A	A	152012126	1	1	4	0	1	0	0	0	0	0	0	0	9715	493	17	3		3	MLL3	7	152012126	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	109751	152012126	7126537	1533	3557											
XRCC2	7516	broad.mit.edu	37	chr7	152373292	152373292	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgcgccaggccgcggcCggggaggcgggagcatgcgc	20	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152373292	A	A	152373292	1	1	4	0	1	0	0	0	0	0	0	0	17580	667	23	1		1	XRCC2	7	152373292	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	361166	152373292	6765371	1534	3558											
DPP6	1804	broad.mit.edu	37	chr7	154379755	154379755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccggggataatgcacagCagctacaggcagatttcggg	13	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154379755	A	A	154379755	1	1	4	0	1	0	0	0	0	0	0	0	4770	725	25	3		3	DPP6	7	154379755	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2006463	154379755	4758908	1535	3559											
DPP6	1804	broad.mit.edu	37	chr7	154379774	154379774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctacaggcagatttcgGgccagagagcaaccgagtga	14	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154379774	T	T	154379774	1	4	4	0	1	0	0	0	0	0	0	0	4770	1247	43	2		2	DPP6	7	154379774	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	19	154379774	4758889	1536	3560											
DPP6	1804	broad.mit.edu	37	chr7	154677481	154677481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctgcaggaccaagcgaCgggctctgctcccgccccgc	12	19	1	0	rs142797584	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154677481	A	A	154677481	1	1	4	0	1	0	0	0	0	0	0	0	4770	551	19	3		3	DPP6	7	154677481	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	297707	154677481	4461182	1537	3561											
DPP6	1804	broad.mit.edu	37	chr7	154679411	154679411	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgttttccgagaggtacttGggcctccatggacttgacaa	12	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154679411	C	C	154679411	3	2	4	1	0	0	0	0	1	0	0	0	4770	1339	47	4	2477	4	DPP6	7	154679411	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1930	154679411	4459252	1538	3562											
SHH	6469	broad.mit.edu	37	chr7	155596253	155596253	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcttggcgccgtcgtcgcGgtccaggaaagtgaggaagt	15	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155596253	A	A	155596253	3	1	4	1	0	0	0	0	1	0	0	0	14392	1116	39	4	662	4	SHH	7	155596253	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	916842	155596253	3542410	1539	3563											
LMBR1	64327	broad.mit.edu	37	chr7	156518501	156518501	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcccacaaaaccaaacgTagaaagagaggcatttccta	7	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156518501	C	C	156518501	3	2	4	1	0	0	0	0	1	0	0	0	8914	1638	57	5	468	5	LMBR1	7	156518501	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	922248	156518501	2620162	1540	3564											
DNAJB6	10049	broad.mit.edu	37	chr7	157174883	157174883	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcttactgtagctatcacAtgaggaaaaaaacttgaaaa	6	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157174883	T	T	157174883	1	4	4	0	1	0	0	0	0	0	0	0	4664	232	8	5		5	DNAJB6	7	157174883	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	656382	157174883	1963780	1541	3565											
PTPRN2	5799	broad.mit.edu	37	chr7	157931306	157931306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggcgtctgcggcgtccCaaggcagtggccacctaggg	18	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157931306	A	A	157931306	1	1	4	0	1	0	0	0	0	0	0	0	12916	609	21	2		2	PTPRN2	7	157931306	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	756423	157931306	1207357	1542	3566											
NCAPG2	54892	broad.mit.edu	37	chr7	158482646	158482646	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgacatacgtctgcaccCtaggaatgacacaaaaaatg	8	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158482646	T	T	158482646	5	4	4	1	0	0	0	0	0	0	1	0	10303	695	24	4	2986	4	NCAPG2	7	158482646	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	551340	158482646	656017	1543	3567											
WDR60	55112	broad.mit.edu	37	chr7	158669353	158669353	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actctgaaagaggagatgaaGatagagaaagaagataccga	12	4	1	8			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158669353	A	A	158669353	3	1	4	1	0	0	0	0	1	0	0	0	17438	942	33	4	558	4	WDR60	7	158669353	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	186707	158669353	469310	1544	3568											
MYOM2	9172	broad.mit.edu	37	chr8	2072039	2072039	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtaatggtgcgtatcccTtctcattttcagtgtatgat	9	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2072039	A	A	2072039	1	1	4	0	1	0	0	0	0	0	0	0	10186	1624	56	5		5	MYOM2	8	2072039	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08		2072039	144291983	1545	3569											
CSMD1	64478	broad.mit.edu	37	chr8	4645293	4645293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaattttgcttcgctGgacttgttacaggccagact	9	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4645293	T	T	4645293	1	4	4	0	1	0	0	0	0	0	0	0	3978	1363	47	2		2	CSMD1	8	4645293	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2573254	4645293	141718729	1546	3570											
PRSS55	203074	broad.mit.edu	37	chr8	10387228	10387228	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaagtaccatgggcctcCcactgccacctctcagggcg	10	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10387228	G	G	10387228	1	3	4	0	1	0	0	0	0	0	0	0	12740	638	22	4		4	PRSS55	8	10387228	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5741935	10387228	135976794	1547	3571											
RP1L1	94137	broad.mit.edu	37	chr8	10465408	10465408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctggacctccccttcaGcctcctgtgcctcctcttct	5	21	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10465408	T	T	10465408	3	4	4	1	0	0	0	0	1	0	0	0	13644	971	34	3	1006	3	RP1L1	8	10465408	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	78180	10465408	135898614	1548	3572											
RP1L1	94137	broad.mit.edu	37	chr8	10465814	10465814	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcaccttctgactctggctCgtcctccccttcagtctcca	6	18	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10465814	A	A	10465814	4	1	4	1	0	0	0	0	0	1	0	0	13644	893	31	3	1412	3	RP1L1	8	10465814	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	406	10465814	135898208	1549	3573											
RP1L1	94137	broad.mit.edu	37	chr8	10473840	10473840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccaaaatgactgggataCccaagatctggggccaaagg	11	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10473840	A	A	10473840	1	1	4	0	1	0	0	0	0	0	0	0	13644	522	18	3		3	RP1L1	8	10473840	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	8026	10473840	135890182	1550	3574											
RP1L1	94137	broad.mit.edu	37	chr8	10480766	10480766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaggggtcagagagcaGcttgggggattggcatttcc	18	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10480766	T	T	10480766	1	4	4	0	1	0	0	0	0	0	0	0	13644	986	34	3		3	RP1L1	8	10480766	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	6926	10480766	135883256	1551	3575											
XKR6	286046	broad.mit.edu	37	chr8	10782407	10782407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctccagaggacccttgcCatccccctaaaaccaagaga	9	15	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10782407	A	A	10782407	1	1	4	0	1	0	0	0	0	0	0	0	17562	609	21	2		2	XKR6	8	10782407	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	301641	10782407	135581615	1552	3576											
XKR6	286046	broad.mit.edu	37	chr8	11058274	11058274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctccacggcgcccagcCcgccgcccgtgtagtcctgc	11	22	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11058274	A	A	11058274	3	1	4	1	0	0	0	0	1	0	0	0	17562	623	22	2	1362	2	XKR6	8	11058274	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	275867	11058274	135305748	1553	3577											
SGCZ	137868	broad.mit.edu	37	chr8	13959863	13959863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggcagtatagggcgagGgtccaactttctgggactca	15	8	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13959863	T	T	13959863	1	4	4	0	1	0	0	0	0	0	0	0	14317	1247	43	2		2	SGCZ	8	13959863	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2901589	13959863	132404159	1554	3578											
MSR1	4481	broad.mit.edu	37	chr8	15967521	15967521	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttaaatattgattaaatgGattttacaggaacaaggtaa	7	3	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15967521	T	T	15967521	1	4	4	0	1	0	0	0	0	0	0	0	9980	1189	41	3		3	MSR1	8	15967521	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	2007658	15967521	130396501	1555	3579											
NAT2	10	broad.mit.edu	37	chr8	18257576	18257576	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaggaacaaattggacttGgaaacattaactgacattct	7	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18257576	C	C	18257576	3	2	4	1	0	0	0	0	1	0	0	0	10271	1339	47	4	65	4	NAT2	8	18257576	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2290055	18257576	128106446	1556	3580											
SH2D4A	63898	broad.mit.edu	37	chr8	19192395	19192395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttactgtctgtagacgtgCggaatttcatcatgggggag	13	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19192395	T	T	19192395	1	4	4	0	1	0	0	0	0	0	0	0	14348	783	27	4		4	SH2D4A	8	19192395	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	934819	19192395	127171627	1557	3581											
HR	55806	broad.mit.edu	37	chr8	21986489	21986489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtccttggggccctggggGaagccagggggaagccagga	19	9	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21986489	T	T	21986489	3	4	4	1	0	0	0	0	1	0	0	0	7414	1165	41	3	3446	3	HR	8	21986489	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2794094	21986489	124377533	1558	3582											
PIWIL2	55124	broad.mit.edu	37	chr8	22210598	22210598	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaagcttttgagaattatCagcccaagatggtggtgttt	11	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22210598	T	T	22210598	4	4	4	1	0	0	0	0	0	1	0	0	12053	827	29	4	2608	4	PIWIL2	8	22210598	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	224109	22210598	124153424	1559	3583											
TNFRSF10B	8795	broad.mit.edu	37	chr8	22881808	22881808	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaatgtcctggtcagagCcaggagtcctacagtccagt	14	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22881808	T	T	22881808	1	4	4	0	1	0	0	0	0	0	0	0	16404	754	26	4		4	TNFRSF10B	8	22881808	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	671210	22881808	123482214	1560	3584											
ADRA1A	148	broad.mit.edu	37	chr8	26721659	26721659	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggacgaagcagccgaccacGatgcccagcgttttggccgc	13	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26721659	T	T	26721659	2	4	4	1	0	0	0	0	0	0	0	1	334	1048	37	3		3	ADRA1A	8	26721659	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	3839851	26721659	119642363	1561	3585											
TMEM66	51669	broad.mit.edu	37	chr8	29927087	29927087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaatgcaacgattttctaTttcagaaccaagcacaggat	6	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29927087	C	C	29927087	1	2	4	0	1	0	0	0	0	0	0	0	16318	1508	52	5		5	TMEM66	8	29927087	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	3205428	29927087	116436935	1562	3586											
UNC5D	137970	broad.mit.edu	37	chr8	35425773	35425773	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcctgtaagtacattctGggtgaccttgtcttgtagga	11	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35425773	T	T	35425773	1	4	4	0	1	0	0	0	0	0	0	0	17121	1363	47	2		2	UNC5D	8	35425773	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5498686	35425773	110938249	1563	3587											
UNC5D	137970	broad.mit.edu	37	chr8	35543998	35543998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagaacaacagcagtcctGgggtgagtctcctgaccgct	11	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35543998	T	T	35543998	1	4	4	0	1	0	0	0	0	0	0	0	17121	1363	47	2		2	UNC5D	8	35543998	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	118225	35543998	110820024	1564	3588											
UNC5D	137970	broad.mit.edu	37	chr8	35624702	35624702	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcttcaaaatgcacaaactCttcatcttcattactgatga	4	10	5	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35624702	T	T	35624702	1	4	4	0	1	0	0	0	0	0	0	0	17121	928	32	4		4	UNC5D	8	35624702	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	80704	35624702	110739320	1565	3589											
KCNU1	157855	broad.mit.edu	37	chr8	36793116	36793116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacccttcagcactgcttGttataaaaggaatgaagagt	8	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36793116	T	T	36793116	3	4	4	1	0	0	0	0	1	0	0	0	8163	1377	48	3	3234	3	KCNU1	8	36793116	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1168414	36793116	109570906	1566	3590											
ADAM2	2515	broad.mit.edu	37	chr8	39613231	39613231	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattaggaaattatttgggaAtaaaagactacctaccttat	6	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39613231	G	G	39613231	1	3	4	0	1	0	0	0	0	0	0	0	241	116	4	5		5	ADAM2	8	39613231	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2820115	39613231	106750791	1567	3591											
ADAM2	2515	broad.mit.edu	37	chr8	39624857	39624857	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaagacaacatattatataAcatacacataggtgcttaac	4	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39624857	T	T	39624857	1	4	4	0	1	0	0	0	0	0	0	0	241	58	2	5		5	ADAM2	8	39624857	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	11626	39624857	106739165	1568	3592											
AGPAT6	137964	broad.mit.edu	37	chr8	41456634	41456634	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcttagggaggcaggtGctggcctggcctggatcttc	15	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41456634	T	T	41456634	1	4	4	0	1	0	0	0	0	0	0	0	391	1334	46	3		3	AGPAT6	8	41456634	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	1831777	41456634	104907388	1569	3593											
ANK1	286	broad.mit.edu	37	chr8	41543692	41543692	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgcgttttggccttcacgGatgacccagaggttcagcaa	11	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41543692	T	T	41543692	2	4	4	1	0	0	0	0	0	0	0	1	620	1164	41	3		3	ANK1	8	41543692	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	87058	41543692	104820330	1570	3594											
ANK1	286	broad.mit.edu	37	chr8	41557133	41557133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctctttttttaaaaaaGctctgttcccgctccgcctc	5	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41557133	T	T	41557133	1	4	4	0	1	0	0	0	0	0	0	0	620	986	34	3		3	ANK1	8	41557133	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	13441	41557133	104806889	1571	3595											
ANK1	286	broad.mit.edu	37	chr8	41558046	41558046	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagcgagaggcatatattatCcaaaggagcaccagaagctc	10	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41558046	G	G	41558046	1	3	4	0	1	0	0	0	0	0	0	0	620	870	30	4		4	ANK1	8	41558046	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	913	41558046	104805976	1572	3596											
ANK1	286	broad.mit.edu	37	chr8	41585608	41585608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctgtggacaggtgctgCttgagggacccgggggcttt	18	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41585608	A	A	41585608	1	1	4	0	1	0	0	0	0	0	0	0	620	812	28	3		3	ANK1	8	41585608	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	27562	41585608	104778414	1573	3597											
PLAT	5327	broad.mit.edu	37	chr8	42038086	42038087	+	Missense_Mutation	DNP	GG	TT	TT													cgcacaggaaccgctctccgGgcgacctcctgtgcttggca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42038087	TT	TT	42038086	3	4	4	1	0	0	0	0	1	0	0	0	12116	1232	43	2	701	2	PLAT	8	42038086	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	452478	42038086	104325936	1574	3598											
HGSNAT	138050	broad.mit.edu	37	chr8	43037331	43037331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgtgctgcagcgattGggagtgacatactttgtggt	15	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43037331	T	T	43037331	3	4	4	1	0	0	0	0	1	0	0	0	7155	1339	47	2	1098	2	HGSNAT	8	43037331	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	999245	43037331	103326691	1575	3599											
PRKDC	5591	broad.mit.edu	37	chr8	48711843	48711843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcatgtaagcatcaatcaCcccagctgcaggcccacagc	8	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48711843	A	A	48711843	3	1	4	1	0	0	0	0	1	0	0	0	12627	507	18	3	2221	3	PRKDC	8	48711843	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	5674512	48711843	97652179	1576	3600											
C8orf22	492307	broad.mit.edu	37	chr8	49985312	49985312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaactccctgttattcAtatcaatgtctcttttctct	4	10	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49985312	G	G	49985312	1	3	4	0	1	0	0	0	0	0	0	0	2444	232	8	5		5	C8orf22	8	49985312	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1273469	49985312	96378710	1577	3601											
C8orf22	492307	broad.mit.edu	37	chr8	49986504	49986504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaattcatgaattcacaaGccaggaataaatgatttcaa	5	7	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49986504	T	T	49986504	1	4	4	0	1	0	0	0	0	0	0	0	2444	986	34	3		3	C8orf22	8	49986504	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1192	49986504	96377518	1578	3602											
PXDNL	137902	broad.mit.edu	37	chr8	52321213	52321213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccgtgtttccctcccagtGggggttcagggcggacagct	14	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52321213	T	T	52321213	3	4	4	1	0	0	0	0	1	0	0	0	12956	1348	47	2	1448	2	PXDNL	8	52321213	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2334709	52321213	94042809	1579	3603											
ST18	9705	broad.mit.edu	37	chr8	53030987	53030987	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccaaatgcctaatttcttCatcactctctattcctgtaa	2	12	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53030987	T	T	53030987	3	4	4	1	0	0	0	0	1	0	0	0	15330	835	29	4	385	4	ST18	8	53030987	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	709774	53030987	93333035	1580	3604											
TGS1	96764	broad.mit.edu	37	chr8	56711824	56711824	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaatggatttagataaaaTtttttttgttaatatgtttt	6	1	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56711824	A	A	56711824	1	1	4	0	1	0	0	0	0	0	0	0	15960	1508	52	5		5	TGS1	8	56711824	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	3680837	56711824	89652198	1581	3605											
TGS1	96764	broad.mit.edu	37	chr8	56723472	56723472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcgatcctgttaagattGcccttgctcgcaataatgca	7	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56723472	T	T	56723472	3	4	4	1	0	0	0	0	1	0	0	0	15960	1319	46	3	2218	3	TGS1	8	56723472	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	11648	56723472	89640550	1582	3606											
LYN	4067	broad.mit.edu	37	chr8	56866543	56866543	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttggggaagtctggatgGgtaagtgtgcggctcgggga	20	4	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56866543	A	A	56866543	3	1	4	1	0	0	0	0	1	0	0	0	9195	1246	43	4	816	4	LYN	8	56866543	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	143071	56866543	89497479	1583	3607											
CYP7A1	1581	broad.mit.edu	37	chr8	59404216	59404216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatagcgaacaatcttccagGacatattgtagctcccgatc	8	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59404216	T	T	59404216	3	4	4	1	0	0	0	0	1	0	0	0	4229	1174	41	3	185	3	CYP7A1	8	59404216	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2537673	59404216	86959806	1584	3608											
CYP7B1	9420	broad.mit.edu	37	chr8	65537045	65537045	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttcgtaagttcaggacCactccaagataaggaagcca	8	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65537045	A	A	65537045	2	1	4	1	0	0	0	0	0	0	0	1	4230	581	21	2		2	CYP7B1	8	65537045	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	6132829	65537045	80826977	1585	3609											
ADHFE1	137872	broad.mit.edu	37	chr8	67352472	67352472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaactagccacaattttgGtttctgcatttggcattata	6	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67352472	T	T	67352472	1	4	4	0	1	0	0	0	0	0	0	0	314	1276	44	3		3	ADHFE1	8	67352472	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1815427	67352472	79011550	1586	3610											
MYBL1	4603	broad.mit.edu	37	chr8	67479100	67479100	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttttattaacaataatacTagaagattacctcttgtttg	4	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67479100	A	A	67479100	1	1	4	0	1	0	0	0	0	0	0	0	10103	1537	53	5		5	MYBL1	8	67479100	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	126628	67479100	78884922	1587	3611											
SULF1	23213	broad.mit.edu	37	chr8	70540211	70540211	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctatagaatgtattgtcataGagtacgataacctaagctat	7	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70540211	C	C	70540211	1	2	4	0	1	0	0	0	0	0	0	0	15488	957	33	4		4	SULF1	8	70540211	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3061111	70540211	75823811	1588	3612											
SLCO5A1	81796	broad.mit.edu	37	chr8	70585465	70585465	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacgaaacgacgtcacgttgTactcccagcaagaaccctgc	8	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70585465	C	C	70585465	3	2	4	1	0	0	0	0	1	0	0	0	14845	1638	57	5	364	5	SLCO5A1	8	70585465	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	45254	70585465	75778557	1589	3613											
EYA1	2138	broad.mit.edu	37	chr8	72129173	72129173	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaactataaaagggagatGgtcacttcacattcaagggt	9	6	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72129173	C	C	72129173	1	2	4	0	1	0	0	0	0	0	0	0	5371	1363	47	4		4	EYA1	8	72129173	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1543708	72129173	74234849	1590	3614											
EYA1	2138	broad.mit.edu	37	chr8	72184101	72184101	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaatctgaatctttaatGggtgttgatgggctgtggat	13	4	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72184101	T	T	72184101	2	4	4	1	0	0	0	0	0	0	0	1	5371	1335	47	2		2	EYA1	8	72184101	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	54928	72184101	74179921	1591	3615											
TRPA1	8989	broad.mit.edu	37	chr8	72958754	72958754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattgaacttacgttgagGgctgtaagcggttcatatat	10	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72958754	T	T	72958754	2	4	4	1	0	0	0	0	0	0	0	1	16702	1219	43	2		2	TRPA1	8	72958754	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	774653	72958754	73405268	1592	3616											
ZFHX4	79776	broad.mit.edu	37	chr8	77619978	77619978	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtgagcagtgagcgctctCtccctgaagaggaatggagg	15	8	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77619978	G	G	77619978	3	3	4	1	0	0	0	0	1	0	0	0	17761	913	32	4	2794	4	ZFHX4	8	77619978	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4661224	77619978	68744044	1593	3617											
ZFHX4	79776	broad.mit.edu	37	chr8	77763587	77763587	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcagagagcgaaactatgtCccaggatgaccatggcctag	13	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77763587	G	G	77763587	3	3	4	1	0	0	0	0	1	0	0	0	17761	855	30	4	4464	4	ZFHX4	8	77763587	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	143609	77763587	68600435	1594	3618											
ZFHX4	79776	broad.mit.edu	37	chr8	77764096	77764096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgtcaacagccctggcCaggggatgttagattccatg	11	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764096	A	A	77764096	3	1	4	1	0	0	0	0	1	0	0	0	17761	595	21	2	4973	2	ZFHX4	8	77764096	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	509	77764096	68599926	1595	3619											
STMN2	11075	broad.mit.edu	37	chr8	80577013	80577013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaggaccagacaaaaagGgcctgtgacatttcttcttc	9	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80577013	T	T	80577013	1	4	4	0	1	0	0	0	0	0	0	0	15427	1247	43	2		2	STMN2	8	80577013	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2812917	80577013	65787009	1596	3620											
RALYL	138046	broad.mit.edu	37	chr8	85441701	85441701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaagtatggaaaaataGttggatgttccgttcacaaa	8	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85441701	T	T	85441701	3	4	4	1	0	0	0	0	1	0	0	0	13128	1029	36	3	190	3	RALYL	8	85441701	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4864688	85441701	60922321	1597	3621											
RALYL	138046	broad.mit.edu	37	chr8	85799896	85799896	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatccaagaggaatgtgtgtCagagattgcagatcactcta	11	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85799896	A	A	85799896	4	1	4	1	0	0	0	0	0	1	0	0	13128	838	29	3	812	3	RALYL	8	85799896	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	358195	85799896	60564126	1598	3622											
CA1	759	broad.mit.edu	37	chr8	86250404	86250404	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagacttagaatgggtgtcAtatttctcgagcactatttt	8	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86250404	T	T	86250404	1	4	4	0	1	0	0	0	0	0	0	0	2536	232	8	5		5	CA1	8	86250404	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	450508	86250404	60113618	1599	3623											
CA2	760	broad.mit.edu	37	chr8	86389284	86389284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacctatttgtgtctgctgCtctcctaccttcctcctact	4	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86389284	A	A	86389284	1	1	4	0	1	0	0	0	0	0	0	0	2542	812	28	3		3	CA2	8	86389284	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	138880	86389284	59974738	1600	3624											
PSKH2	85481	broad.mit.edu	37	chr8	87076623	87076623	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatcaaagagctcccctccGgtagccagctccattaccat	7	16	1	1	rs139789006	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87076623	T	T	87076623	2	4	4	1	0	0	0	0	0	0	0	1	12771	1103	39	1		1	PSKH2	8	87076623	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	687339	87076623	59287399	1601	3625											
CALB1	793	broad.mit.edu	37	chr8	91094979	91094979	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcgtgtgtctgtgtccgcGcgagggggagtgagcaaaag	18	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91094979	C	C	91094979	1	2	4	0	1	0	0	0	0	0	0	0	2599	1102	38	4		4	CALB1	8	91094979	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	4018356	91094979	55269043	1602	3626											
RUNX1T1	862	broad.mit.edu	37	chr8	93026760	93026760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtctgagtctcccacccaCactatcccttacaccaagaa	4	16	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93026760	A	A	93026760	1	1	4	0	1	0	0	0	0	0	0	0	13858	493	17	3		3	RUNX1T1	8	93026760	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1931781	93026760	53337262	1603	3627											
CDH17	1015	broad.mit.edu	37	chr8	95177971	95177971	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgatttgcactcaagacGgtggatatgatactaacctt	8	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95177971	A	A	95177971	1	1	4	0	1	0	0	0	0	0	0	0	3132	1131	39	4		4	CDH17	8	95177971	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2151211	95177971	51186051	1604	3628											
KIAA1429	25962	broad.mit.edu	37	chr8	95508630	95508630	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtagaagctgttttaactCtgcagcattaatactcatcg	7	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95508630	A	A	95508630	4	1	4	1	0	0	0	0	0	1	0	0	8301	922	32	3	1157	3	KIAA1429	8	95508630	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	330659	95508630	50855392	1605	3629											
PGCP	10404	broad.mit.edu	37	chr8	97847138	97847138	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatgtatgtgacctttccTgtgccaattcaacccagctg	8	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97847138	C	C	97847138	1	2	4	0	1	0	0	0	0	0	0	0	11881	1595	55	5		5	PGCP	8	97847138	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2338508	97847138	48516884	1606	3630											
MATN2	4147	broad.mit.edu	37	chr8	99019735	99019735	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactgcctgctgagtgaccaTggttgtgaatactcctgtgt	11	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99019735	A	A	99019735	3	1	4	1	0	0	0	0	1	0	0	0	9426	1461	51	5	1513	5	MATN2	8	99019735	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1172597	99019735	47344287	1607	3631											
VPS13B	157680	broad.mit.edu	37	chr8	100245269	100245269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttttgctgatgcctgtGggaggcctcacttgctgcgc	14	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100245269	T	T	100245269	1	4	4	0	1	0	0	0	0	0	0	0	17317	1363	47	2		2	VPS13B	8	100245269	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1225534	100245269	46118753	1608	3632											
RGS22	26166	broad.mit.edu	37	chr8	101075090	101075090	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagttaaagactttcctaAaacagggttctcttaaggtt	7	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101075090	G	G	101075090	1	3	4	0	1	0	0	0	0	0	0	0	13414	29	1	5		5	RGS22	8	101075090	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	829821	101075090	45288932	1609	3633											
RGS22	26166	broad.mit.edu	37	chr8	101075759	101075759	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaaatctttcaaactcctTtctattgccaatgtcataag	3	10	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101075759	C	C	101075759	3	2	4	1	0	0	0	0	1	0	0	0	13414	1850	64	5	2637	5	RGS22	8	101075759	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	669	101075759	45288263	1610	3634											
RGS22	26166	broad.mit.edu	37	chr8	101083735	101083735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaattcatgccggacttgctCcatcttacttgtgagaccaa	7	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101083735	A	A	101083735	3	1	4	1	0	0	0	0	1	0	0	0	13414	856	30	3	3426	3	RGS22	8	101083735	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7976	101083735	45280287	1611	3635											
RNF19A	25897	broad.mit.edu	37	chr8	101299593	101299593	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taacacctagcatagtgcctGacatatggtgtgcactcaac	8	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101299593	A	A	101299593	1	1	4	0	1	0	0	0	0	0	0	0	13581	1305	45	4		4	RNF19A	8	101299593	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	215858	101299593	45064429	1612	3636											
UBR5	51366	broad.mit.edu	37	chr8	103301722	103301722	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatatcatcctgttcttcatCtctgccccgaacgggctgtg	8	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103301722	A	A	103301722	3	1	4	1	0	0	0	0	1	0	0	0	17031	913	32	3	3827	3	UBR5	8	103301722	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2002129	103301722	43062300	1613	3637											
UBR5	51366	broad.mit.edu	37	chr8	103317410	103317410	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacatctgtggctgatgaaTgtctgcagcatctgtagatt	10	8	4	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103317410	C	C	103317410	2	2	4	1	0	0	0	0	0	0	0	1	17031	1451	51	5		5	UBR5	8	103317410	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	15688	103317410	43046612	1614	3638											
UBR5	51366	broad.mit.edu	37	chr8	103327008	103327008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctggcaattgaggatgCatcactacacgtggatgctg	12	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103327008	A	A	103327008	3	1	4	1	0	0	0	0	1	0	0	0	17031	710	25	3	6721	3	UBR5	8	103327008	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	9598	103327008	43037014	1615	3639											
CTHRC1	115908	broad.mit.edu	37	chr8	104390389	104390389	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagctgaatgttcaggaccTcttcccattgaagctataat	9	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104390389	A	A	104390389	2	1	4	1	0	0	0	0	0	0	0	1	4044	1538	54	5		5	CTHRC1	8	104390389	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	1063381	104390389	41973633	1616	3640											
RIMS2	9699	broad.mit.edu	37	chr8	104513164	104513165	+	Missense_Mutation	DNP	CC	AA	AA													cctggctcccatcccggcggCctctcagccgcctctgcagc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	104513165	AA	AA	104513164	3	1	4	1	0	0	0	0	1	0	0	0	13479	739	26	3	52	3	RIMS2	8	104513164	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	122775	104513164	41850858	1617	3641											
RIMS2	9699	broad.mit.edu	37	chr8	104672414	104672414	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagtagactctgccagtgtCtggtggaactgtccttccag	12	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104672414	G	G	104672414	1	3	4	0	1	0	0	0	0	0	0	0	13479	928	32	4		4	RIMS2	8	104672414	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	159250	104672414	41691608	1618	3642											
RIMS2	9699	broad.mit.edu	37	chr8	104928902	104928902	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactttttctctttccttaaCaaaagcaccacaccaaaaat	1	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104928902	G	G	104928902	1	3	4	0	1	0	0	0	0	0	0	0	13479	493	17	4		4	RIMS2	8	104928902	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	256488	104928902	41435120	1619	3643											
DPYS	1807	broad.mit.edu	37	chr8	105441800	105441800	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagattcatgaggaagtcgGgtgttgaggggtctggtcgc	17	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105441800	T	T	105441800	3	4	4	1	0	0	0	0	1	0	0	0	4786	1232	43	2	656	2	DPYS	8	105441800	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	512898	105441800	40922222	1620	3644											
LRP12	29967	broad.mit.edu	37	chr8	105510277	105510277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccacaacgaaactgatcaCaagcacaatttggttcctca	5	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105510277	A	A	105510277	3	1	4	1	0	0	0	0	1	0	0	0	9041	478	17	3	2088	3	LRP12	8	105510277	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	68477	105510277	40853745	1621	3645											
OXR1	55074	broad.mit.edu	37	chr8	107710016	107710016	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcctggatcttctttactggGacctgccccttggggtacag	12	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107710016	C	C	107710016	1	2	4	0	1	0	0	0	0	0	0	0	11428	1189	41	4		4	OXR1	8	107710016	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2199739	107710016	38654006	1622	3646											
RSPO2	340419	broad.mit.edu	37	chr8	109001230	109001230	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaaaatcttcaacttagctCctctcctaagttgcatatcc	3	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109001230	A	A	109001230	1	1	4	0	1	0	0	0	0	0	0	0	13821	870	30	3		3	RSPO2	8	109001230	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1291214	109001230	37362792	1623	3647											
PKHD1L1	93035	broad.mit.edu	37	chr8	110394763	110394763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttacggaaaataacacctGcaaaggtcacatcaacagct	7	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110394763	A	A	110394763	3	1	4	1	0	0	0	0	1	0	0	0	12067	1319	46	4	394	4	PKHD1L1	8	110394763	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1393533	110394763	35969259	1624	3648											
CSMD3	114788	broad.mit.edu	37	chr8	113304930	113304930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggactaccagggtgaccaCagctaacagctaataagatg	10	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113304930	A	A	113304930	3	1	4	1	0	0	0	0	1	0	0	0	3980	478	17	3	2567	3	CSMD3	8	113304930	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2910167	113304930	33059092	1625	3649											
CSMD3	114788	broad.mit.edu	37	chr8	113317037	113317037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctagtccatgataaccagGgtcacagctgaaaactactt	7	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113317037	T	T	113317037	3	4	4	1	0	0	0	0	1	0	0	0	3980	1232	43	2	3024	2	CSMD3	8	113317037	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	12107	113317037	33046985	1626	3650											
CSMD3	114788	broad.mit.edu	37	chr8	113326690	113326690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaacatcaaattcctttTctgtctggaagaattctaca	6	8	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113326690	C	C	113326690	3	2	4	1	0	0	0	0	1	0	0	0	3980	1783	62	5	3702	5	CSMD3	8	113326690	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	9653	113326690	33037332	1627	3651											
CSMD3	114788	broad.mit.edu	37	chr8	113933969	113933969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcacaagagaactgcacaGttgatccaaggctaaagtta	8	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113933969	T	T	113933969	3	4	4	1	0	0	0	0	1	0	0	0	3980	1029	36	3	9851	3	CSMD3	8	113933969	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	607279	113933969	32430053	1628	3652											
CSMD3	114788	broad.mit.edu	37	chr8	114186168	114186168	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaaaaaggaggaaaaggaGagtttacagttatttcaata	9	2	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114186168	A	A	114186168	1	1	4	0	1	0	0	0	0	0	0	0	3980	957	33	4		4	CSMD3	8	114186168	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	252199	114186168	32177854	1629	3653											
COL14A1	7373	broad.mit.edu	37	chr8	121262964	121262964	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagatatttgcctcccaggCctcaggcttcagcgacgccc	10	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121262964	G	G	121262964	3	3	4	1	0	0	0	0	1	0	0	0	3703	739	26	4	2793	4	COL14A1	8	121262964	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7076796	121262964	25101058	1630	3654											
COL14A1	7373	broad.mit.edu	37	chr8	121267700	121267700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattagacaacagccctcttGtcaaggaagcaatttgtatt	7	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121267700	T	T	121267700	1	4	4	0	1	0	0	0	0	0	0	0	3703	1392	48	3		3	COL14A1	8	121267700	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4736	121267700	25096322	1631	3655											
COL14A1	7373	broad.mit.edu	37	chr8	121295855	121295855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggatacaatgaaacatGgttttctttctatgttcagg	10	5	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121295855	T	T	121295855	1	4	4	0	1	0	0	0	0	0	0	0	3703	1363	47	2		2	COL14A1	8	121295855	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	28155	121295855	25068167	1632	3656											
C8orf76	84933	broad.mit.edu	37	chr8	124232296	124232296	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgaagtaaacaaggaCaattaatacagtacaagata	7	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124232296	T	T	124232296	1	4	4	0	1	0	0	0	0	0	0	0	2463	493	17	4		4	C8orf76	8	124232296	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	2936441	124232296	22131726	1633	3657											
C8orf76	84933	broad.mit.edu	37	chr8	124249311	124249311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgaggtggcattactgagCcttccctccgccagctcgcc	11	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124249311	A	A	124249311	1	1	4	0	1	0	0	0	0	0	0	0	2463	754	26	3		3	C8orf76	8	124249311	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	17015	124249311	22114711	1634	3658											
ATAD2	29028	broad.mit.edu	37	chr8	124413899	124413899	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggtgtgcccatcatagcCgatggtggcatcctgactgt	12	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124413899	T	T	124413899	1	4	4	0	1	0	0	0	0	0	0	0	1075	667	23	4		4	ATAD2	8	124413899	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	164588	124413899	21950123	1635	3659											
WDYHV1	55093	broad.mit.edu	37	chr8	124449469	124449469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatttagagtgatccgtGcagattcatatttgaagaac	10	5	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124449469	T	T	124449469	3	4	4	1	0	0	0	0	1	0	0	0	17470	1319	46	3	421	3	WDYHV1	8	124449469	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	35570	124449469	21914553	1636	3660											
FER1L6	654463	broad.mit.edu	37	chr8	124978581	124978581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactaagattctcttcaccaCcattctgcaggatccttcag	5	14	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124978581	T	T	124978581	1	4	4	0	1	0	0	0	0	0	0	0	5872	522	18	4		4	FER1L6	8	124978581	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	529112	124978581	21385441	1637	3661											
FER1L6	654463	broad.mit.edu	37	chr8	125113558	125113558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttgggattttgaaaggCtgtcctcagatgacttcctg	12	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125113558	A	A	125113558	3	1	4	1	0	0	0	0	1	0	0	0	5872	796	28	3	5250	3	FER1L6	8	125113558	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	134977	125113558	21250464	1638	3662											
NDUFB9	4715	broad.mit.edu	37	chr8	125555397	125555397	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cataagaatgaaaaggatatGgcgaaggccacccagctgct	11	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125555397	A	A	125555397	3	1	4	1	0	0	0	0	1	0	0	0	10383	1348	47	4	177	4	NDUFB9	8	125555397	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	441839	125555397	20808625	1639	3663											
ADCY8	114	broad.mit.edu	37	chr8	131826197	131826197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagtgttaggagtttctcCattctcatgcactcacatga	7	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131826197	A	A	131826197	1	1	4	0	1	0	0	0	0	0	0	0	300	609	21	2		2	ADCY8	8	131826197	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	6270800	131826197	14537825	1640	3664											
ADCY8	114	broad.mit.edu	37	chr8	131949374	131949374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcagtgggcatggtcctGgcggggctcaggaagtccag	17	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131949374	T	T	131949374	3	4	4	1	0	0	0	0	1	0	0	0	300	1357	47	2	2385	2	ADCY8	8	131949374	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	123177	131949374	14414648	1641	3665											
LRRC6	23639	broad.mit.edu	37	chr8	133644985	133644985	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaactaataatttacataCagagtagcattgatgtctgt	7	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133644985	A	A	133644985	5	1	4	1	0	0	0	0	0	0	1	0	9103	492	17	3	778	3	LRRC6	8	133644985	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	1695611	133644985	12719037	1642	3666											
TG	7038	broad.mit.edu	37	chr8	133973164	133973164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggcctaggaagagcctGtgtcaagggagatggggcta	16	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133973164	T	T	133973164	1	4	4	0	1	0	0	0	0	0	0	0	15936	1392	48	3		3	TG	8	133973164	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	328179	133973164	12390858	1643	3667											
TG	7038	broad.mit.edu	37	chr8	133995688	133995688	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctttttatctcttggatGagagtaccccctcattcatc	6	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133995688	T	T	133995688	1	4	4	0	1	0	0	0	0	0	0	0	15936	1305	45	3		3	TG	8	133995688	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	22524	133995688	12368334	1644	3668											
KHDRBS3	10656	broad.mit.edu	37	chr8	136637778	136637778	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctagaactgagaggtttcTtgggtgtattcagagctgga	14	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136637778	G	G	136637778	1	3	4	0	1	0	0	0	0	0	0	0	8218	1624	56	5		5	KHDRBS3	8	136637778	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2642090	136637778	9726244	1645	3669											
FAM135B	51059	broad.mit.edu	37	chr8	139163907	139163907	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagcagctgacgtacagctCaattcaggcacctgatgttg	10	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139163907	A	A	139163907	3	1	4	1	0	0	0	0	1	0	0	0	5495	825	29	3	1441	3	FAM135B	8	139163907	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2526129	139163907	7200115	1646	3670											
FAM135B	51059	broad.mit.edu	37	chr8	139180119	139180119	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttattcctgagtctttcCaaaacaaaacagacaaacct	4	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139180119	G	G	139180119	1	3	4	0	1	0	0	0	0	0	0	0	5495	609	21	4		4	FAM135B	8	139180119	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	16212	139180119	7183903	1647	3671											
COL22A1	169044	broad.mit.edu	37	chr8	139768047	139768047	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgagcctggtacaccaGgtggccccgcaggtcccacg	12	17	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139768047	A	A	139768047	3	1	4	1	0	0	0	0	1	0	0	0	3713	1000	35	4	3140	4	COL22A1	8	139768047	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	587928	139768047	6595975	1648	3672											
COL22A1	169044	broad.mit.edu	37	chr8	139838846	139838846	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtggtgccatccactgTgagaggggaacagaaagctc	16	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139838846	G	G	139838846	1	3	4	0	1	0	0	0	0	0	0	0	3713	1711	59	5		5	COL22A1	8	139838846	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	70799	139838846	6525176	1649	3673											
CYP11B1	1584	broad.mit.edu	37	chr8	143956441	143956442	+	Frame_Shift_Ins	INS	-	T	T													cactggcgcatgccaaagccINSaaagggcacgtggtagaagt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143956442	T	T	143956441	7	5	4	1	0	1	1	0	0	0	0	0	4178	594	21	0	189	0	CYP11B1	8	143956441	Frame_Shift_Ins	INS	-	TCGA-05-4382-01A-01D-1265-08	4117595	143956441	2407581	1650	3674											
PYCRL	65263	broad.mit.edu	37	chr8	144687783	144687783	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtaggagaccctcatgCaggagggagggagccgcagt	17	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144687783	A	A	144687783	1	1	4	0	1	0	0	0	0	0	0	0	12965	725	25	3		3	PYCRL	8	144687783	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	731342	144687783	1676239	1651	3675											
PLEC	5339	broad.mit.edu	37	chr8	145003952	145003952	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggtagtgcagctccaGgctgtgcagggcttggcgct	17	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145003952	A	A	145003952	2	1	4	1	0	0	0	0	0	0	0	1	12147	991	35	4		4	PLEC	8	145003952	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	316169	145003952	1360070	1652	3676											
PLEC	5339	broad.mit.edu	37	chr8	145008696	145008696	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagaccccagcccaccagaCctgggacagccctggtccca	9	19	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145008696	G	G	145008696	1	3	4	0	1	0	0	0	0	0	0	0	12147	522	18	4		4	PLEC	8	145008696	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4744	145008696	1355326	1653	3677											
PLEC	5339	broad.mit.edu	37	chr8	145008751	145008751	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcggctccggaagaacctttCaggcctggggcgttccagga	14	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145008751	G	G	145008751	1	3	4	0	1	0	0	0	0	0	0	0	12147	841	29	4		4	PLEC	8	145008751	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	55	145008751	1355271	1654	3678											
PLEC	5339	broad.mit.edu	37	chr8	145012823	145012823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggtgcttgttgacccaCttggtgaaggttttcttctg	12	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145012823	A	A	145012823	3	1	4	1	0	0	0	0	1	0	0	0	12147	564	20	3	13617	3	PLEC	8	145012823	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4072	145012823	1351199	1655	3679											
PLEC	5339	broad.mit.edu	37	chr8	145028017	145028017	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcactgcccaggccagcgcCgcagccgggggaggagcccg	17	17	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145028017	G	G	145028017	1	3	4	0	1	0	0	0	0	0	0	0	12147	667	23	4		4	PLEC	8	145028017	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	15194	145028017	1336005	1656	3680											
SPATC1	375686	broad.mit.edu	37	chr8	145095278	145095278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtcctgccagaggcccCaaggctgcggctggctgagc	15	15	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145095278	A	A	145095278	3	1	4	1	0	0	0	0	1	0	0	0	15133	594	21	2	686	2	SPATC1	8	145095278	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	67261	145095278	1268744	1657	3681											
HEATR7A	727957	broad.mit.edu	37	chr8	145218704	145218705	+	5'UTR	DNP	GG	TT	TT													aagttgtccatgttcacactGggtgaaggaagctgaaacca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	145218705	TT	TT	145218704	1	4	4	0	1	0	0	0	0	0	0	0	7101	1363	47	2		2	HEATR7A	8	145218704	5'UTR	DNP	GG	TCGA-05-4382-01A-01D-1265-08	123426	145218704	1145318	1658	3682											
VPS28	51160	broad.mit.edu	37	chr8	145649195	145649195	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtgccccgggctcaggcaTgcaggaagcggttgaaggcg	17	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145649195	A	A	145649195	3	1	4	1	0	0	0	0	1	0	0	0	17326	1464	51	5	10	5	VPS28	8	145649195	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	430491	145649195	714827	1659	3683											
DMRT1	1761	broad.mit.edu	37	chr9	847035	847035	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccactgcccagtgcggccGagctgcttgtcaaaagagag	12	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	847035	T	T	847035	4	4	4	1	0	0	0	0	0	1	0	0	4625	1059	37	3	436	3	DMRT1	9	847035	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08		847035	140366396	1660	3684											
C9orf68	55064	broad.mit.edu	37	chr9	4618941	4618941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaatgactcattattacCatttagccttaaaactgcca	3	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4618941	A	A	4618941	1	1	4	0	1	0	0	0	0	0	0	0	2517	609	21	2		2	C9orf68	9	4618941	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3771906	4618941	136594490	1661	3685											
INSL4	3641	broad.mit.edu	37	chr9	5231742	5231742	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagccctggactaccaaaCaatcagaatgaggcctgaaa	10	10	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5231742	G	G	5231742	1	3	4	0	1	0	0	0	0	0	0	0	7838	493	17	4		4	INSL4	9	5231742	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	612801	5231742	135981689	1662	3686											
PTPRD	5789	broad.mit.edu	37	chr9	8376609	8376609	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagatgaaaagcaaacctTgtaaagtgcaaatgttcgaa	8	5	0	2	rs144200611		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8376609	A	A	8376609	4	1	4	1	0	0	0	0	0	1	0	0	12907	1821	63	5	1270	5	PTPRD	9	8376609	Nonsense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	3144867	8376609	132836822	1663	3687											
PTPRD	5789	broad.mit.edu	37	chr9	8460523	8460523	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtgattggctgcggatccaGatccattgacaccacggggt	13	11	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8460523	T	T	8460523	3	4	4	1	0	0	0	0	1	0	0	0	12907	933	33	3	2096	3	PTPRD	9	8460523	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	83914	8460523	132752908	1664	3688											
PTPRD	5789	broad.mit.edu	37	chr9	8524867	8524867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaacacggaccctgcggcGtctcaactccccctgagcct	8	18	1	1	rs75123693	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8524867	T	T	8524867	1	4	4	0	1	0	0	0	0	0	0	0	12907	1160	40	3		3	PTPRD	9	8524867	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	64344	8524867	132688564	1665	3689											
PTPRD	5789	broad.mit.edu	37	chr9	8524977	8524977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagtgcccgcgctgttggtGgcaacacactcatattttcc	10	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8524977	T	T	8524977	2	4	4	1	0	0	0	0	0	0	0	1	12907	1335	47	2		2	PTPRD	9	8524977	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	110	8524977	132688454	1666	3690											
MPDZ	8777	broad.mit.edu	37	chr9	13109921	13109921	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgattcataagtgaaaaaTgatacactaatcatcatgta	5	6	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13109921	C	C	13109921	1	2	4	0	1	0	0	0	0	0	0	0	9816	1479	51	5		5	MPDZ	9	13109921	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4584944	13109921	128103510	1667	3691											
FREM1	158326	broad.mit.edu	37	chr9	14747250	14747250	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgagtaagaaggaacaaAgattttcatacctgtctggg	12	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14747250	C	C	14747250	1	2	4	0	1	0	0	0	0	0	0	0	6104	87	3	5		5	FREM1	9	14747250	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1637329	14747250	126466181	1668	3692											
FREM1	158326	broad.mit.edu	37	chr9	14851592	14851592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgatatagacaggcagcCacgcactctctgacttttga	8	12	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14851592	A	A	14851592	3	1	4	1	0	0	0	0	1	0	0	0	6104	595	21	2	5875	2	FREM1	9	14851592	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	104342	14851592	126361839	1669	3693											
FREM1	158326	broad.mit.edu	37	chr9	14868959	14868959	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacggcattcgcagcccccCaactcagagagttcatgctg	10	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14868959	T	T	14868959	4	4	4	1	0	0	0	0	0	1	0	0	6104	595	21	4	6716	4	FREM1	9	14868959	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	17367	14868959	126344472	1670	3694											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18635882	18635882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcctttatttagaaggCaatcaataattttgtgtcaa	7	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18635882	A	A	18635882	1	1	4	0	1	0	0	0	0	0	0	0	274	725	25	3		3	ADAMTSL1	9	18635882	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3766923	18635882	122577549	1671	3695											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18681698	18681698	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccaggagtcctcgtgtggGgggggggggcggggaaaaag	22	6	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18681698	A	A	18681698	1	1	4	0	1	0	0	0	0	0	0	0	274	1247	43	4		4	ADAMTSL1	9	18681698	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	45816	18681698	122531733	1672	3696											
HAUS6	54801	broad.mit.edu	37	chr9	19058167	19058167	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acattttggggagtagggctCaattctggtttgtgtctttc	12	6	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19058167	G	G	19058167	3	3	4	1	0	0	0	0	1	0	0	0	7036	825	29	4	277	4	HAUS6	9	19058167	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	376469	19058167	122155264	1673	3697											
ACER2	340485	broad.mit.edu	37	chr9	19423792	19423792	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcaaggacatacttggaaGaggccactttattttttgcc	9	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19423792	C	C	19423792	1	2	4	0	1	0	0	0	0	0	0	0	139	957	33	4		4	ACER2	9	19423792	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	365625	19423792	121789639	1674	3698											
SLC24A2	25769	broad.mit.edu	37	chr9	19516285	19516285	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagagggcgatagagaggaTgacgaagagcagcatgatga	17	5	0	6			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19516285	A	A	19516285	3	1	4	1	0	0	0	0	1	0	0	0	14580	1464	51	5	137	5	SLC24A2	9	19516285	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	92493	19516285	121697146	1675	3699											
TEK	7010	broad.mit.edu	37	chr9	27185502	27185502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaagactttaaccataCggatcatttctcagtagcca	6	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27185502	A	A	27185502	3	1	4	1	0	0	0	0	1	0	0	0	15873	536	19	3	1236	3	TEK	9	27185502	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7669217	27185502	114027929	1676	3700											
NDUFB6	4712	broad.mit.edu	37	chr9	32572861	32572861	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatgtgttgggggggaccgGagaggtctgtcactcaccat	17	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32572861	A	A	32572861	1	1	4	0	1	0	0	0	0	0	0	0	10380	1189	41	4		4	NDUFB6	9	32572861	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5387359	32572861	108640570	1677	3701											
DNAI1	27019	broad.mit.edu	37	chr9	34512327	34512327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacatccctctgtctgtGgctacagagaaagctggttc	9	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34512327	T	T	34512327	1	4	4	0	1	0	0	0	0	0	0	0	4649	1363	47	2		2	DNAI1	9	34512327	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1939466	34512327	106701104	1678	3702											
PIGO	84720	broad.mit.edu	37	chr9	35091221	35091221	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattgtctttaagtgaatcaGagctgagatatttaccaggg	10	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35091221	C	C	35091221	1	2	4	0	1	0	0	0	0	0	0	0	11989	957	33	4		4	PIGO	9	35091221	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	578894	35091221	106122210	1679	3703											
PIGO	84720	broad.mit.edu	37	chr9	35092199	35092199	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagctacaacaaaactatcaGagaagaacacagccaagcga	7	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35092199	C	C	35092199	3	2	4	1	0	0	0	0	1	0	0	0	11989	942	33	4	1604	4	PIGO	9	35092199	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	978	35092199	106121232	1680	3704											
GBA2	57704	broad.mit.edu	37	chr9	35738836	35738836	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcagcacaaacttcaggttCaggtccttccaatcagcagt	8	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35738836	T	T	35738836	2	4	4	1	0	0	0	0	0	0	0	1	6329	813	29	4		4	GBA2	9	35738836	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	646637	35738836	105474595	1681	3705											
NPR2	4882	broad.mit.edu	37	chr9	35801591	35801591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccctgctgttggcttgggGgtggcaggattcggcttgcc	16	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35801591	T	T	35801591	1	4	4	0	1	0	0	0	0	0	0	0	10690	1247	43	2		2	NPR2	9	35801591	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	62755	35801591	105411840	1682	3706											
PAX5	5079	broad.mit.edu	37	chr9	36966733	36966733	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgaatacctttgatgagcAggagagaggaagggtgagtg	16	5	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36966733	T	T	36966733	1	4	4	0	1	0	0	0	0	0	0	0	11576	203	7	5		5	PAX5	9	36966733	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1165142	36966733	104246698	1683	3707											
FAM75A6	389730	broad.mit.edu	37	chr9	43627457	43627457	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaaaagctggctataattCttccaaaaactttcctgcaa	5	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627457	A	A	43627457	3	1	4	1	0	0	0	0	1	0	0	0	5674	912	32	3	2805	3	FAM75A6	9	43627457	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	6660724	43627457	97585974	1684	3708											
PIP5K1B	8395	broad.mit.edu	37	chr9	71404112	71404112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttatccagtgggaagttGgtcacccacattggtgcttc	11	10	1	0	rs12336421	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71404112	T	T	71404112	1	4	4	0	1	0	0	0	0	0	0	0	12035	1363	47	2		2	PIP5K1B	9	71404112	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	27776655	71404112	69809319	1685	3709											
FXN	2395	broad.mit.edu	37	chr9	71686180	71686180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgaccctgatggtttgGttcactcatttttatctcca	7	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71686180	T	T	71686180	1	4	4	0	1	0	0	0	0	0	0	0	6174	1276	44	3		3	FXN	9	71686180	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	282068	71686180	69527251	1686	3710											
TMEM2	23670	broad.mit.edu	37	chr9	74331502	74331502	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaatgaagaacattttaaTttaccatattatgtaaaaag	6	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74331502	A	A	74331502	1	1	4	0	1	0	0	0	0	0	0	0	16244	1508	52	5		5	TMEM2	9	74331502	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2645322	74331502	66881929	1687	3711											
GDA	9615	broad.mit.edu	37	chr9	74764488	74764488	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgctgacatgtgtgccgctCagatgccgcccctggcgcac	12	17	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74764488	A	A	74764488	3	1	4	1	0	0	0	0	1	0	0	0	6369	827	29	3	15	3	GDA	9	74764488	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	432986	74764488	66448943	1688	3712											
GDA	9615	broad.mit.edu	37	chr9	74865578	74865578	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttgcctttgcctaatGtaggttgactttctgaattg	9	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74865578	T	T	74865578	1	4	4	0	1	0	0	0	0	0	0	0	6369	1392	48	3		3	GDA	9	74865578	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	101090	74865578	66347853	1689	3713											
TRPM6	140803	broad.mit.edu	37	chr9	77407756	77407756	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgacaagcatgaacatccAaaaaatatcataaataatat	4	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77407756	T	T	77407756	1	4	4	0	1	0	0	0	0	0	0	0	16715	145	5	5		5	TRPM6	9	77407756	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2542178	77407756	63805675	1690	3714											
TRPM6	140803	broad.mit.edu	37	chr9	77442874	77442874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcacaccacctgagagaCagcaaggacaagggagggtc	14	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77442874	T	T	77442874	1	4	4	0	1	0	0	0	0	0	0	0	16715	493	17	4		4	TRPM6	9	77442874	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	35118	77442874	63770557	1691	3715											
VPS13A	23230	broad.mit.edu	37	chr9	79971823	79971823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaagttttaattttttGcctgtcgtagtttggtgaat	10	3	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79971823	T	T	79971823	1	4	4	0	1	0	0	0	0	0	0	0	17316	1334	46	3		3	VPS13A	9	79971823	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2528949	79971823	61241608	1692	3716											
TLE4	7091	broad.mit.edu	37	chr9	82319826	82319826	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagctcgttatgtaagttcAttcacctttgtgttagggga	11	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82319826	T	T	82319826	1	4	4	0	1	0	0	0	0	0	0	0	16064	232	8	5		5	TLE4	9	82319826	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2348003	82319826	58893605	1693	3717											
FLJ46321	389763	broad.mit.edu	37	chr9	84604788	84604788	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggggtgaccctttctgtctCtttcatgatgactcagtccc	9	12	4	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84604788	T	T	84604788	1	4	4	0	1	0	0	0	0	0	0	0	5990	928	32	4		4	FLJ46321	9	84604788	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2284962	84604788	56608643	1694	3718											
FLJ46321	389763	broad.mit.edu	37	chr9	84609178	84609178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggaggacagcggaatcCgtgtggcacagaagcaggag	16	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84609178	A	A	84609178	3	1	4	1	0	0	0	0	1	0	0	0	5990	652	23	1	3807	1	FLJ46321	9	84609178	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4390	84609178	56604253	1695	3719											
RASEF	158158	broad.mit.edu	37	chr9	85622420	85622420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcggattatttccagatcCctgtaaaattgtattttatg	7	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85622420	A	A	85622420	3	1	4	1	0	0	0	0	1	0	0	0	13176	637	22	2	1306	2	RASEF	9	85622420	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1013242	85622420	55591011	1696	3720											
FRMD3	257019	broad.mit.edu	37	chr9	85913604	85913604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacaaagggatgttatagGggatttggaaaagccagctt	12	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85913604	T	T	85913604	1	4	4	0	1	0	0	0	0	0	0	0	6110	1247	43	2		2	FRMD3	9	85913604	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	291184	85913604	55299827	1697	3721											
FRMD3	257019	broad.mit.edu	37	chr9	85926728	85926728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctacctgacacttgccCgagaagccaaggaggggacg	12	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85926728	A	A	85926728	1	1	4	0	1	0	0	0	0	0	0	0	6110	667	23	1		1	FRMD3	9	85926728	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	13124	85926728	55286703	1698	3722											
GKAP1	80318	broad.mit.edu	37	chr9	86399575	86399575	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagacatttacaactgaagTataaaacagatgtagaatag	7	4	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86399575	A	A	86399575	1	1	4	0	1	0	0	0	0	0	0	0	6487	1653	57	5		5	GKAP1	9	86399575	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	472847	86399575	54813856	1699	3723											
SECISBP2	79048	broad.mit.edu	37	chr9	91943595	91943595	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggttaccataagcgaacaGacaggaaatccagaatcatt	8	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91943595	T	T	91943595	3	4	4	1	0	0	0	0	1	0	0	0	14119	942	33	3	613	3	SECISBP2	9	91943595	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	5544020	91943595	49269836	1700	3724											
SEMA4D	10507	broad.mit.edu	37	chr9	92006263	92006264	+	Missense_Mutation	DNP	CC	AA	AA													tccgtgaagaagaagtagacCctgtcatcctcgccgtcggg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	92006264	AA	AA	92006263	3	1	4	1	0	0	0	0	1	0	0	0	14147	622	22	2	2500	2	SEMA4D	9	92006263	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	62668	92006263	49207168	1701	3725											
IARS	3376	broad.mit.edu	37	chr9	95004448	95004448	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactcacctgtgttttttcTtgaataaggactttatccga	8	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95004448	A	A	95004448	3	1	4	1	0	0	0	0	1	0	0	0	7543	1606	56	5	647	5	IARS	9	95004448	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2998185	95004448	46208983	1702	3726											
WNK2	65268	broad.mit.edu	37	chr9	96054484	96054484	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccattgtcctgcctgtctGgaggcactcccatgggatca	10	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96054484	A	A	96054484	1	1	4	0	1	0	0	0	0	0	0	0	17505	1363	47	4		4	WNK2	9	96054484	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1050036	96054484	45158947	1703	3727											
PHF2	5253	broad.mit.edu	37	chr9	96416860	96416860	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctcttcatcccctcaggtGagtgcgggcagctttgggga	13	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96416860	T	T	96416860	1	4	4	0	1	0	0	0	0	0	0	0	11925	1305	45	3		3	PHF2	9	96416860	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	362376	96416860	44796571	1704	3728											
PTCH1	5727	broad.mit.edu	37	chr9	98220410	98220410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggccgatgtactgctccCagaagaggaaggggtagccg	17	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98220410	A	A	98220410	3	1	4	1	0	0	0	0	1	0	0	0	12836	595	21	2	1314	2	PTCH1	9	98220410	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1803550	98220410	42993021	1705	3729											
KIAA1529	57653	broad.mit.edu	37	chr9	100090327	100090327	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgttttcacaccctcctgAcaaaggaagtgatggagtac	9	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100090327	G	G	100090327	3	3	4	1	0	0	0	0	1	0	0	0	8310	275	10	5	2310	5	KIAA1529	9	100090327	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1869917	100090327	41123104	1706	3730											
ANKS6	203286	broad.mit.edu	37	chr9	101552507	101552507	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtggtcagggttggcgccCttctccaccagctgctgggc	15	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101552507	T	T	101552507	2	4	4	1	0	0	0	0	0	0	0	1	692	680	24	4		4	ANKS6	9	101552507	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1462180	101552507	39660924	1707	3731											
COL15A1	1306	broad.mit.edu	37	chr9	101832185	101832185	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaatggccttctgatgattCttaaagagttttcaattttt	7	5	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101832185	T	T	101832185	1	4	4	0	1	0	0	0	0	0	0	0	3704	928	32	4		4	COL15A1	9	101832185	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	279678	101832185	39381246	1708	3732											
ALG2	85365	broad.mit.edu	37	chr9	101980872	101980872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatttagagatggatagaGgacatcagggtctatgtgag	14	4	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101980872	A	A	101980872	3	1	4	1	0	0	0	0	1	0	0	0	519	1000	35	4	659	4	ALG2	9	101980872	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	148687	101980872	39232559	1709	3733											
TEX10	54881	broad.mit.edu	37	chr9	103092305	103092305	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagagccatcttcaagggtcTctgttacaaatttccttatc	6	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103092305	A	A	103092305	3	1	4	1	0	0	0	0	1	0	0	0	15894	1551	54	5	1432	5	TEX10	9	103092305	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1111433	103092305	38121126	1710	3734											
C9orf125	84302	broad.mit.edu	37	chr9	104238432	104238432	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggactcagccgccgcagttCcaggaaatagtgccgaccca	11	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104238432	A	A	104238432	4	1	4	1	0	0	0	0	0	1	0	0	2480	864	30	3	272	3	C9orf125	9	104238432	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1146127	104238432	36974999	1711	3735											
PPP3R2	5535	broad.mit.edu	37	chr9	104357038	104357038	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacgtcgatcactcgccGcaccaacgggttgtggcgca	13	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104357038	T	T	104357038	2	4	4	1	0	0	0	0	0	0	0	1	12502	1086	38	3		3	PPP3R2	9	104357038	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	118606	104357038	36856393	1712	3736											
SMC2	10592	broad.mit.edu	37	chr9	106889740	106889740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagcaaacataaacgggaGgctgaagatggtgctgcaaa	12	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106889740	T	T	106889740	3	4	4	1	0	0	0	0	1	0	0	0	14897	991	35	2	2843	2	SMC2	9	106889740	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2532702	106889740	34323691	1713	3737											
OR13C5	138799	broad.mit.edu	37	chr9	107360884	107360884	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcagtggcatccaagtcatCtgaattaagtgtctcttgag	10	8	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107360884	A	A	107360884	3	1	4	1	0	0	0	0	1	0	0	0	11031	913	32	3	147	3	OR13C5	9	107360884	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	471144	107360884	33852547	1714	3738											
OR13C2	392376	broad.mit.edu	37	chr9	107367473	107367473	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctatgatccaggacccagCtgccatgggtacataggcat	10	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107367473	T	T	107367473	3	4	4	1	0	0	0	0	1	0	0	0	11028	797	28	4	523	4	OR13C2	9	107367473	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	6589	107367473	33845958	1715	3739											
ABCA1	19	broad.mit.edu	37	chr9	107591340	107591340	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccttctcatacacgatgcCcttgatgatcacagccactg	6	15	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107591340	G	G	107591340	3	3	4	1	0	0	0	0	1	0	0	0	28	623	22	4	4957	4	ABCA1	9	107591340	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	223867	107591340	33622091	1716	3740											
ZNF462	58499	broad.mit.edu	37	chr9	109692040	109692040	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagatttcaaacaagagagGgtaaggatatgttttgattt	11	3	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109692040	A	A	109692040	2	1	4	1	0	0	0	0	0	0	0	1	18053	1246	43	4		4	ZNF462	9	109692040	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	2100700	109692040	31521391	1717	3741											
SVEP1	79987	broad.mit.edu	37	chr9	113148238	113148239	+	Missense_Mutation	DNP	GG	TT	TT													gttgcaggtaatgatgccgtGgccctgcagcagaaaacctt					rs10817003	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	113148239	TT	TT	113148238	3	4	4	1	0	0	0	0	1	0	0	0	15538	1348	47	2	562	2	SVEP1	9	113148238	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	3456198	113148238	28065193	1718	3742											
SVEP1	79987	broad.mit.edu	37	chr9	113208289	113208289	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccatagatgccagaaacttCaaaatccaggttaaagcctg	7	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113208289	A	A	113208289	4	1	4	1	0	0	0	0	0	1	0	0	15538	835	29	3	6516	3	SVEP1	9	113208289	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	60051	113208289	28005142	1719	3743											
SVEP1	79987	broad.mit.edu	37	chr9	113234499	113234499	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcacttcttttaatccGtgaggacttggcattgccga	12	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113234499	T	T	113234499	2	4	4	1	0	0	0	0	0	0	0	1	15538	1144	40	3		3	SVEP1	9	113234499	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	26210	113234499	27978932	1720	3744											
MUSK	4593	broad.mit.edu	37	chr9	113562997	113562997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattttttataaccgctacaCtacagagtctgatgtgtggg	9	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113562997	T	T	113562997	3	4	4	1	0	0	0	0	1	0	0	0	10083	565	20	4	2429	4	MUSK	9	113562997	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	328498	113562997	27650434	1721	3745											
C9orf43	257169	broad.mit.edu	37	chr9	116191477	116191477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattgtatgaaacagaaccCactaacaaggacattagtgc	8	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116191477	A	A	116191477	2	1	4	1	0	0	0	0	0	0	0	1	2509	581	21	2		2	C9orf43	9	116191477	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2628480	116191477	25021954	1722	3746											
RGS3	5998	broad.mit.edu	37	chr9	116299126	116299126	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactcgcaggagcagaagaaGagagtgtgctggtgcctgtc	15	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116299126	T	T	116299126	3	4	4	1	0	0	0	0	1	0	0	0	13415	933	33	3	2180	3	RGS3	9	116299126	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	107649	116299126	24914305	1723	3747											
COL27A1	85301	broad.mit.edu	37	chr9	116931016	116931016	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacccagaaaacagctccatCttcatttacaaagtcagccc	4	14	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116931016	G	G	116931016	3	3	4	1	0	0	0	0	1	0	0	0	3717	913	32	4	1191	4	COL27A1	9	116931016	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	631890	116931016	24282415	1724	3748											
COL27A1	85301	broad.mit.edu	37	chr9	116984441	116984441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtgtggaggatgacatGgagggaggggccctggaggg	22	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116984441	T	T	116984441	1	4	4	0	1	0	0	0	0	0	0	0	3717	1363	47	2		2	COL27A1	9	116984441	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	53425	116984441	24228990	1725	3749											
COL27A1	85301	broad.mit.edu	37	chr9	117012824	117012824	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgggagatgagcttcaGgggaaggagcgggagggctg	20	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117012824	A	A	117012824	1	1	4	0	1	0	0	0	0	0	0	0	3717	1015	35	4		4	COL27A1	9	117012824	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	28383	117012824	24200607	1726	3750											
TNC	3371	broad.mit.edu	37	chr9	117783521	117783521	+	Frame_Shift_Del	DEL	C	-	-													actggattgagtgttcgtggCccttccagtggaaccagtta							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117783521	-	-	117783521	7	5	4	1	0	1	0	1	0	0	0	0	16393	739	26	0	88	0	TNC	9	117783521	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	770697	117783521	23429910	1727	3751											
TRIM32	22954	broad.mit.edu	37	chr9	119460463	119460463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagctgaggagcggcgtcggGactttggagagaagttaact	16	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119460463	T	T	119460463	3	4	4	1	0	0	0	0	1	0	0	0	16630	1174	41	3	444	3	TRIM32	9	119460463	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1676942	119460463	21752968	1728	3752											
ASTN2	23245	broad.mit.edu	37	chr9	119582809	119582810	+	Intron	INS	-	T	T													ttgaaggtcaaggttcagccINSttgctgagctgtagtgtctg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119582810	T	T	119582809	6	5	4	0	1	1	1	0	0	0	0	0	1069	696	24	0		0	ASTN2	9	119582809	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	122346	119582809	21630622	1729	3753											
TLR4	7099	broad.mit.edu	37	chr9	120474737	120474737	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctaccttaatattgacaGgaaaccccatccagagttta	5	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120474737	T	T	120474737	4	4	4	1	0	0	0	0	0	1	0	0	16076	1001	35	2	341	2	TLR4	9	120474737	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	891928	120474737	20738694	1730	3754											
TLR4	7099	broad.mit.edu	37	chr9	120476443	120476443	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctatgatgcctttgttatCtactcaagccaggatgagga	9	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476443	A	A	120476443	2	1	4	1	0	0	0	0	0	0	0	1	16076	903	32	3		3	TLR4	9	120476443	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1706	120476443	20736988	1731	3755											
FBXW2	26190	broad.mit.edu	37	chr9	123526797	123526797	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacccaaaacccgcagcCccggcacccaaagtcagtca	7	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123526797	A	A	123526797	1	1	4	0	1	0	0	0	0	0	0	0	5823	638	22	2		2	FBXW2	9	123526797	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	3050354	123526797	17686634	1732	3756											
NDUFA8	4702	broad.mit.edu	37	chr9	124910370	124910370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaatcagaaagtgagacCtccagcagaagcctttttac	8	11	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124910370	A	A	124910370	1	1	4	0	1	0	0	0	0	0	0	0	10366	696	24	2		2	NDUFA8	9	124910370	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1383573	124910370	16303061	1733	3757											
PTGS1	5742	broad.mit.edu	37	chr9	125140094	125140094	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacttaagtccatgcctctGgcccctcattcccccatcag	6	18	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125140094	T	T	125140094	1	4	4	0	1	0	0	0	0	0	0	0	12861	1363	47	2		2	PTGS1	9	125140094	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	229724	125140094	16073337	1734	3758											
OR1J2	26740	broad.mit.edu	37	chr9	125273139	125273139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgggcctccccatccGgccagagcagcaggctgtgt	12	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125273139	T	T	125273139	3	4	4	1	0	0	0	0	1	0	0	0	11054	1116	39	1	61	1	OR1J2	9	125273139	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	133045	125273139	15940292	1735	3759											
OR1Q1	158131	broad.mit.edu	37	chr9	125377563	125377564	+	Missense_Mutation	DNP	GC	TT	TT													acttcttctgtgacctctacGctctgatgaagatctcctgc					rs116701890	byFrequency;by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	125377564	TT	TT	125377563	3	4	4	1	0	0	0	0	1	0	0	0	11065	1087	38	3	549	3	OR1Q1	9	125377563	Missense_Mutation	DNP	GC	TCGA-05-4382-01A-01D-1265-08	104424	125377563	15835868	1736	3760											
RC3H2	54542	broad.mit.edu	37	chr9	125617621	125617621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatcttcttcttttgtcCttctctgggtttcaaataaa	6	8	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125617621	A	A	125617621	3	1	4	1	0	0	0	0	1	0	0	0	13275	681	24	2	1024	2	RC3H2	9	125617621	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	240058	125617621	15595810	1737	3761											
DENND1A	57706	broad.mit.edu	37	chr9	126146038	126146038	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcggcctccatgtccaGgttgctgaagacgtcttcca	11	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126146038	C	C	126146038	3	2	4	1	0	0	0	0	1	0	0	0	4466	991	35	4	1305	4	DENND1A	9	126146038	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	528417	126146038	15067393	1738	3762											
GOLGA1	2800	broad.mit.edu	37	chr9	127660853	127660853	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttctttagttcaaattggTgattttgtaaagaacgttca	8	5	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127660853	A	A	127660853	3	1	4	1	0	0	0	0	1	0	0	0	6615	1696	59	5	957	5	GOLGA1	9	127660853	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1514815	127660853	13552578	1739	3763											
GAPVD1	26130	broad.mit.edu	37	chr9	128061359	128061359	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgcgaagcaacagagaatCaatttggatcggcttatcat	9	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128061359	A	A	128061359	2	1	4	1	0	0	0	0	0	0	0	1	6301	816	29	3		3	GAPVD1	9	128061359	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	400506	128061359	13152072	1740	3764											
PTRH1	138428	broad.mit.edu	37	chr9	130478320	130478320	+	5'Flank	SNP	G	A	A													ggttcccgggggcgtggccaGaggggtggggcctgtgggcg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130478320	A	A	130478320	1	1	4	0	1	0	0	0	0	0	0	0	12924	957	33	4		4	PTRH1	9	130478320	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	2416961	130478320	10735111	1741	3765	10	2									
PTRH1	138428	broad.mit.edu	37	chr9	130478322	130478322	+	5'Flank	SNP	G	T	T													ttcccgggggcgtggccagaGgggtggggcctgtgggcgtc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130478322	T	T	130478322	1	4	4	0	1	0	0	0	0	0	0	0	12924	1015	35	2		2	PTRH1	9	130478322	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	2	130478322	10735109	1742	3766	10	2									
SH2D3C	10044	broad.mit.edu	37	chr9	130511788	130511789	+	Frame_Shift_Del	DEL	TG	-	-													ctgctcaaacaggtactggaTgtgtgtgtagctctcgcctg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130511789	-	-	130511788	7	5	4	1	0	1	0	1	0	0	0	0	14347	1464	51	0	1773	0	SH2D3C	9	130511788	Frame_Shift_Del	DEL	TG	TCGA-05-4382-01A-01D-1265-08	33466	130511788	10701643	1743	3767											
CIZ1	25792	broad.mit.edu	37	chr9	130941553	130941553	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgcaggacccgtggctgGaatcgtggcagcacttgggc	15	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130941553	A	A	130941553	2	1	4	1	0	0	0	0	0	0	0	1	3472	1165	41	4		4	CIZ1	9	130941553	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	429765	130941553	10271878	1744	3768											
DNM1	1759	broad.mit.edu	37	chr9	131001614	131001614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagggactatatttattatGgatactaacctcctatatgt	7	6	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131001614	T	T	131001614	1	4	4	0	1	0	0	0	0	0	0	0	4710	1363	47	2		2	DNM1	9	131001614	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	60061	131001614	10211817	1745	3769											
CERCAM	51148	broad.mit.edu	37	chr9	131186560	131186560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaccccccaggtgaggccGggatgggggccttgggtgga	18	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131186560	T	T	131186560	1	4	4	0	1	0	0	0	0	0	0	0	3296	1131	39	1		1	CERCAM	9	131186560	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	184946	131186560	10026871	1746	3770											
NUP188	23511	broad.mit.edu	37	chr9	131744890	131744890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaatgttggatgataggGcatacctggtacgctgggaa	14	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131744890	T	T	131744890	3	4	4	1	0	0	0	0	1	0	0	0	10853	1203	42	3	1641	3	NUP188	9	131744890	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	558330	131744890	9468541	1747	3771											
ASB6	140459	broad.mit.edu	37	chr9	132400147	132400147	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgggcagaggcagggctttGaccttcacatccacaggcca	12	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132400147	C	C	132400147	2	2	4	1	0	0	0	0	0	0	0	1	1031	1277	45	4		4	ASB6	9	132400147	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	655257	132400147	8813284	1748	3772											
USP20	10868	broad.mit.edu	37	chr9	132620472	132620472	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccaccttcccactctggGcctaaatggctggggcaata	10	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132620472	A	A	132620472	1	1	4	0	1	0	0	0	0	0	0	0	17178	1218	42	4		4	USP20	9	132620472	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	220325	132620472	8592959	1749	3773											
NCS1	23413	broad.mit.edu	37	chr9	132984887	132984887	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgaagacccctccccacTgccccagcccaggatcactc	7	19	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132984887	A	A	132984887	1	1	4	0	1	0	0	0	0	0	0	0	10335	1595	55	5		5	NCS1	9	132984887	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	364415	132984887	8228544	1750	3774											
ASS1	445	broad.mit.edu	37	chr9	133342122	133342122	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtccaggtcattgctcCctggaggatgcctgaattct	10	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133342122	G	G	133342122	3	3	4	1	0	0	0	0	1	0	0	0	1065	623	22	4	449	4	ASS1	9	133342122	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	357235	133342122	7871309	1751	3775											
ASS1	445	broad.mit.edu	37	chr9	133365013	133365013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtgcaggccaaaggggGttgagggaaagtgcagggca	19	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133365013	T	T	133365013	1	4	4	0	1	0	0	0	0	0	0	0	1065	1276	44	3		3	ASS1	9	133365013	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	22891	133365013	7848418	1752	3776											
LAMC3	10319	broad.mit.edu	37	chr9	133927853	133927853	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctaaccatatgaagactgtCaaagccttcttctcttgtct	6	11	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133927853	A	A	133927853	1	1	4	0	1	0	0	0	0	0	0	0	8688	841	29	3		3	LAMC3	9	133927853	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	562840	133927853	7285578	1753	3777											
LAMC3	10319	broad.mit.edu	37	chr9	133928036	133928036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtctggcccccaggatGccgggcatcccagggaggta	15	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133928036	T	T	133928036	3	4	4	1	0	0	0	0	1	0	0	0	8688	1319	46	3	1827	3	LAMC3	9	133928036	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	183	133928036	7285395	1754	3778											
BAT2L1	84726	broad.mit.edu	37	chr9	134353267	134353267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaaaggcagagaaggagGccaagttggctgctccgagg	16	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134353267	T	T	134353267	3	4	4	1	0	0	0	0	1	0	0	0	1325	1203	42	3	4605	3	BAT2L1	9	134353267	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	425231	134353267	6860164	1755	3779											
POMT1	10585	broad.mit.edu	37	chr9	134394319	134394319	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgggagcacggtgtggaaCgtggaggagcaccgatacgg	18	9	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134394319	T	T	134394319	2	4	4	1	0	0	0	0	0	0	0	1	12340	535	19	4		4	POMT1	9	134394319	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	41052	134394319	6819112	1756	3780											
C9orf96	169436	broad.mit.edu	37	chr9	136260790	136260790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcagcctgaaggccgtcCtgaagacaatggaggagaag	15	9	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136260790	A	A	136260790	3	1	4	1	0	0	0	0	1	0	0	0	2534	680	24	2	800	2	C9orf96	9	136260790	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1866471	136260790	4952641	1757	3781											
DBH	1621	broad.mit.edu	37	chr9	136501727	136501727	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccatttccagctcctggtGcggaggctcaaggctggcgt	13	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136501727	T	T	136501727	2	4	4	1	0	0	0	0	0	0	0	1	4283	1306	46	3		3	DBH	9	136501727	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	240937	136501727	4711704	1758	3782											
RXRA	6256	broad.mit.edu	37	chr9	137313435	137313435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtcctgcatgggcccaGcgtgtggcagggcctggtct	16	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137313435	T	T	137313435	1	4	4	0	1	0	0	0	0	0	0	0	13874	986	34	3		3	RXRA	9	137313435	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	811708	137313435	3899996	1759	3783											
COL5A1	1289	broad.mit.edu	37	chr9	137664635	137664635	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcttcttcttttgtgacaGggacaccctggcaaagaagg	11	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137664635	A	A	137664635	5	1	4	1	0	0	0	0	0	0	1	0	3728	1014	35	4	2388	4	COL5A1	9	137664635	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	351200	137664635	3548796	1760	3784											
COL5A1	1289	broad.mit.edu	37	chr9	137708881	137708882	+	Missense_Mutation	DNP	GG	TT	TT													cccaataccagggatcccccGgccctactggtgaaccaggt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	137708882	TT	TT	137708881	3	4	4	1	0	0	0	0	1	0	0	0	3728	1116	39	1	4342	1	COL5A1	9	137708881	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	44246	137708881	3504550	1761	3785											
FCN1	2219	broad.mit.edu	37	chr9	137801875	137801875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagaagttgttgttgtgGcccgttagagaattacctgc	13	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137801875	T	T	137801875	2	4	4	1	0	0	0	0	0	0	0	1	5848	1190	42	3		3	FCN1	9	137801875	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	92994	137801875	3411556	1762	3786											
FCN1	2219	broad.mit.edu	37	chr9	137809691	137809691	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggacagcgagcccccgGgccatggtggctccactcag	14	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137809691	T	T	137809691	2	4	4	1	0	0	0	0	0	0	0	1	5848	1219	43	2		2	FCN1	9	137809691	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	7816	137809691	3403740	1763	3787											
OBP2A	29991	broad.mit.edu	37	chr9	138439723	138439723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcatctacagatggggGcaggaagctcatatacctgc	11	10	4	1	rs144739878		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138439723	T	T	138439723	3	4	4	1	0	0	0	0	1	0	0	0	10905	1203	42	3	298	3	OBP2A	9	138439723	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	630032	138439723	2773708	1764	3788											
KCNT1	57582	broad.mit.edu	37	chr9	138669205	138669205	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgcaagcacaacagctatGaagacgccaaggcctacggg	12	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138669205	A	A	138669205	3	1	4	1	0	0	0	0	1	0	0	0	8161	1291	45	4	2453	4	KCNT1	9	138669205	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	229482	138669205	2544226	1765	3789											
KIAA1984	84960	broad.mit.edu	37	chr9	139694873	139694873	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggagaacaacatcgagaaGacaatgatcaagatcatcac	8	9	3	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139694873	C	C	139694873	3	2	4	1	0	0	0	0	1	0	0	0	8336	933	33	4	489	4	KIAA1984	9	139694873	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1025668	139694873	1518558	1766	3790											
PTGDS	5730	broad.mit.edu	37	chr9	139873716	139873716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccatgctgctgcagcccgCggggtccctcggctcctaca	11	17	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139873716	A	A	139873716	3	1	4	1	0	0	0	0	1	0	0	0	12848	768	27	3	306	3	PTGDS	9	139873716	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	178843	139873716	1339715	1767	3791											
ABCA2	20	broad.mit.edu	37	chr9	139906938	139906938	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcccgcagcctcgctcaccTgggcagccctgcgcaccgcg	13	20	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139906938	A	A	139906938	3	1	4	1	0	0	0	0	1	0	0	0	32	1594	55	5	2196	5	ABCA2	9	139906938	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	33222	139906938	1306493	1768	3792											
C9orf139	401563	broad.mit.edu	37	chr9	139929087	139929087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcacaccaccccatctcTtctccttgaaacagacaccc	3	20	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139929087	C	C	139929087	1	2	4	0	1	0	0	0	0	0	0	0	2485	1624	56	5		5	C9orf139	9	139929087	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	22149	139929087	1284344	1769	3793											
EXD3	54932	broad.mit.edu	37	chr9	140249228	140249228	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgcgttgggacacagcgctGaaaggaaaggccagctcagc	14	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140249228	A	A	140249228	1	1	4	0	1	0	0	0	0	0	0	0	5341	1305	45	4		4	EXD3	9	140249228	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	320141	140249228	964203	1770	3794											
CACNA1B	774	broad.mit.edu	37	chr9	140811693	140811693	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcattctccttcttgcagAtgcggagcccgtgggtgact	11	12	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140811693	T	T	140811693	3	4	4	1	0	0	0	0	1	0	0	0	2565	347	12	5	798	5	CACNA1B	9	140811693	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	562465	140811693	401738	1771	3795											
DIP2C	22982	broad.mit.edu	37	chr10	387305	387305	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttaaacgcatcggacCtgacaccctcagacacccgg	9	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	387305	T	T	387305	1	4	4	0	1	0	0	0	0	0	0	0	4569	696	24	4		4	DIP2C	10	387305	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		387305	135147442	1772	3796											
WDR37	22884	broad.mit.edu	37	chr10	1170222	1170222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagcgatgaccgcacgGtgaaagtctgggacttgaaa	14	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1170222	T	T	1170222	3	4	4	1	0	0	0	0	1	0	0	0	17418	1261	44	3	1210	3	WDR37	10	1170222	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	782917	1170222	134364525	1773	3797											
TUBAL3	79861	broad.mit.edu	37	chr10	5442724	5442724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgattccattcagatagacCtgtataatctgctaatccca	6	10	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5442724	A	A	5442724	1	1	4	0	1	0	0	0	0	0	0	0	16877	696	24	2		2	TUBAL3	10	5442724	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4272502	5442724	130092023	1774	3798											
FBXO18	84893	broad.mit.edu	37	chr10	5947987	5947987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgtccatcctgtttggGttctctctacaggtcaggga	10	10	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5947987	T	T	5947987	1	4	4	0	1	0	0	0	0	0	0	0	5788	1276	44	3		3	FBXO18	10	5947987	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	505263	5947987	129586760	1775	3799											
PFKFB3	5209	broad.mit.edu	37	chr10	6268373	6268373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgggggacgcatgccgGgcgtgatgccacagatctgg	17	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6268373	T	T	6268373	1	4	4	0	1	0	0	0	0	0	0	0	11857	1247	43	2		2	PFKFB3	10	6268373	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	320386	6268373	129266374	1776	3800											
ITIH2	3698	broad.mit.edu	37	chr10	7786920	7786920	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcacctaaagcccacggaCtaataggtaaagtgtctatt	7	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7786920	T	T	7786920	2	4	4	1	0	0	0	0	0	0	0	1	7974	564	20	4		4	ITIH2	10	7786920	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1518547	7786920	127747827	1777	3801											
GATA3	2625	broad.mit.edu	37	chr10	8100193	8100193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcgaggtagagattcccCaggtgtccctgacggcctcc	13	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8100193	A	A	8100193	1	1	4	0	1	0	0	0	0	0	0	0	6317	609	21	2		2	GATA3	10	8100193	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	313273	8100193	127434554	1778	3802											
ITGA8	8516	broad.mit.edu	37	chr10	15714798	15714798	+	Intron	DEL	C	-	-													gaatgaaagcaagaggcaggCcctccatgagcagacccaca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15714798	-	-	15714798	6	5	4	0	1	1	0	1	0	0	0	0	7952	754	26	0		0	ITGA8	10	15714798	Intron	DEL	C	TCGA-05-4382-01A-01D-1265-08	7614605	15714798	119819949	1779	3803											
FAM188A	80013	broad.mit.edu	37	chr10	15831173	15831173	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagatttttaaaaaggcaaAaaatgtacaatatgtcttaa	5	3	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15831173	G	G	15831173	1	3	4	0	1	0	0	0	0	0	0	0	5560	29	1	5		5	FAM188A	10	15831173	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	116375	15831173	119703574	1780	3804											
VIM	7431	broad.mit.edu	37	chr10	17278464	17278464	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatctgaatctcagatacaGctggctaatttgagaggttc	10	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17278464	C	C	17278464	1	2	4	0	1	0	0	0	0	0	0	0	17293	986	34	4		4	VIM	10	17278464	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1447291	17278464	118256283	1781	3805											
SLC39A12	221074	broad.mit.edu	37	chr10	18250693	18250693	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttacctacacagcctactgAgcctcaggcaggatgaagat	9	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18250693	T	T	18250693	3	4	4	1	0	0	0	0	1	0	0	0	14729	304	11	5	451	5	SLC39A12	10	18250693	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	972229	18250693	117284054	1782	3806											
SLC39A12	221074	broad.mit.edu	37	chr10	18276596	18276597	+	Intron	DNP	CC	AA	AA													ctcaggtaatctggtcttttCcatttcagataaagttcact							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18276597	AA	AA	18276596	1	1	4	0	1	0	0	0	0	0	0	0	14729	870	30	3		3	SLC39A12	10	18276596	Intron	DNP	CC	TCGA-05-4382-01A-01D-1265-08	25903	18276596	117258151	1783	3807											
CACNB2	783	broad.mit.edu	37	chr10	18827336	18827336	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctatatatacaatcttcaTagaaaaaaggttgcctatgg	6	6	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18827336	C	C	18827336	1	2	4	0	1	0	0	0	0	0	0	0	2579	1421	49	5		5	CACNB2	10	18827336	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	550740	18827336	116707411	1784	3808											
PLXDC2	84898	broad.mit.edu	37	chr10	20432250	20432250	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatacactggagaagtcgtaCatcgaatgctaacagccaca	8	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20432250	T	T	20432250	3	4	4	1	0	0	0	0	1	0	0	0	12213	478	17	4	586	4	PLXDC2	10	20432250	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1604914	20432250	115102497	1785	3809											
NEBL	10529	broad.mit.edu	37	chr10	21098859	21098859	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaagaaatcaacactcatCaagaaggaatttaaaaaagg	8	5	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21098859	T	T	21098859	1	4	4	0	1	0	0	0	0	0	0	0	10398	841	29	4		4	NEBL	10	21098859	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	666609	21098859	114435888	1786	3810											
C10orf114	399726	broad.mit.edu	37	chr10	21784772	21784772	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcggctgcggaggcgccCggcacctgcagggggcgctg	20	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21784772	A	A	21784772	2	1	4	1	0	0	0	0	0	0	0	1	1596	639	23	1		1	C10orf114	10	21784772	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	685913	21784772	113749975	1787	3811											
DNAJC1	64215	broad.mit.edu	37	chr10	22048630	22048630	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagctgccgggcacagaGcaggcagcgcactaggcatt	14	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22048630	A	A	22048630	1	1	4	0	1	0	0	0	0	0	0	0	4668	986	34	4		4	DNAJC1	10	22048630	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	263858	22048630	113486117	1788	3812											
COMMD3	23412	broad.mit.edu	37	chr10	22607350	22607350	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagaaaaggagccaaagGgcatgtcaagcaattgaagt	11	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22607350	C	C	22607350	1	2	4	0	1	0	0	0	0	0	0	0	3749	1247	43	4		4	COMMD3	10	22607350	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	558720	22607350	112927397	1789	3813											
MSRB2	22921	broad.mit.edu	37	chr10	23399200	23399200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatctacctgaataacaaGgaagcaggaatgtatcattg	11	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23399200	T	T	23399200	3	4	4	1	0	0	0	0	1	0	0	0	9982	991	35	2	259	2	MSRB2	10	23399200	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	791850	23399200	112135547	1790	3814											
ARHGAP21	57584	broad.mit.edu	37	chr10	24959289	24959289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttcagacagtgatacaGtttcactttgttcttttcca	5	10	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24959289	T	T	24959289	3	4	4	1	0	0	0	0	1	0	0	0	873	1029	36	3	5871	3	ARHGAP21	10	24959289	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1560089	24959289	110575458	1791	3815											
GPR158	57512	broad.mit.edu	37	chr10	25840010	25840010	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaactgtcactctcaaacttCacaggtatatacattttatt	4	9	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25840010	T	T	25840010	3	4	4	1	0	0	0	0	1	0	0	0	6728	826	29	4	1532	4	GPR158	10	25840010	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	880721	25840010	109694737	1792	3816											
GAD2	2572	broad.mit.edu	37	chr10	26569879	26569879	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaactgaagctcagttgcGcatgccctgagcctgtcagg	12	11	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26569879	C	C	26569879	1	2	4	0	1	0	0	0	0	0	0	0	6240	1102	38	4		4	GAD2	10	26569879	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	729869	26569879	108964868	1793	3817											
ANKRD26	22852	broad.mit.edu	37	chr10	27355368	27355368	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctctttatgttttaacatCactcaatgcttatattttaa	2	7	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27355368	T	T	27355368	1	4	4	0	1	0	0	0	0	0	0	0	654	841	29	4		4	ANKRD26	10	27355368	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	785489	27355368	108179379	1794	3818											
ACBD5	91452	broad.mit.edu	37	chr10	27508851	27508851	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatgtcataatttccaagTaatactaataaaatttacaa	2	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27508851	A	A	27508851	1	1	4	0	1	0	0	0	0	0	0	0	125	1653	57	5		5	ACBD5	10	27508851	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	153483	27508851	108025896	1795	3819											
SVIL	6840	broad.mit.edu	37	chr10	29775094	29775094	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtttgtcatccatgagacGgtaaatgcagttagtttcta	9	6	2	1	rs149082592	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29775094	A	A	29775094	3	1	4	1	0	0	0	0	1	0	0	0	15539	1116	39	4	1997	4	SVIL	10	29775094	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2266243	29775094	105759653	1796	3820											
SVIL	6840	broad.mit.edu	37	chr10	29812654	29812654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaggacccatacttctcCatcccactgtctcgacctgt	5	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29812654	A	A	29812654	3	1	4	1	0	0	0	0	1	0	0	0	15539	594	21	2	3851	2	SVIL	10	29812654	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	37560	29812654	105722093	1797	3821											
MTPAP	55149	broad.mit.edu	37	chr10	30602883	30602883	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagaggagaagaatcaggTttgttttgctcccttcccta	9	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30602883	C	C	30602883	2	2	4	1	0	0	0	0	0	0	0	1	10050	1722	60	5		5	MTPAP	10	30602883	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	790229	30602883	104931864	1798	3822											
MTPAP	55149	broad.mit.edu	37	chr10	30645129	30645129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggattcctggagcctggCtgcatggcctggccactctg	15	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30645129	A	A	30645129	1	1	4	0	1	0	0	0	0	0	0	0	10050	812	28	3		3	MTPAP	10	30645129	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	42246	30645129	104889618	1799	3823											
MTPAP	55149	broad.mit.edu	37	chr10	30658258	30658258	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttaagggtcaggtctcacctCctctgacattttccataccc	6	14	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30658258	A	A	30658258	1	1	4	0	1	0	0	0	0	0	0	0	10050	870	30	3		3	MTPAP	10	30658258	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	13129	30658258	104876489	1800	3824											
NRP1	8829	broad.mit.edu	37	chr10	33481480	33481480	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtctgtttgaaaattccagGaaagccaggattaccaagaa	9	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33481480	C	C	33481480	1	2	4	0	1	0	0	0	0	0	0	0	10755	1189	41	4		4	NRP1	10	33481480	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2823222	33481480	102053267	1801	3825											
PARD3	56288	broad.mit.edu	37	chr10	34690798	34690798	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaacccgtgtcagcatgTccaacaggttcaacacgact	7	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34690798	C	C	34690798	2	2	4	1	0	0	0	0	0	0	0	1	11537	1654	58	5		5	PARD3	10	34690798	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	1209318	34690798	100843949	1802	3826											
ANKRD30A	91074	broad.mit.edu	37	chr10	37508094	37508094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttcagatgaccctaaaaCtgaaagaggaatcattaact	6	8	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37508094	A	A	37508094	3	1	4	1	0	0	0	0	1	0	0	0	658	564	20	3	3420	3	ANKRD30A	10	37508094	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2817296	37508094	98026653	1803	3827											
ZNF33A	7581	broad.mit.edu	37	chr10	38345076	38345076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgtggaaaatctttctGtgtaaaatcaggacttattt	8	4	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38345076	T	T	38345076	3	4	4	1	0	0	0	0	1	0	0	0	17980	1377	48	3	2038	3	ZNF33A	10	38345076	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	836982	38345076	97189671	1804	3828											
ZNF37A	7587	broad.mit.edu	37	chr10	38403744	38403744	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggagtggcagcatctggAccctgctcagaggaccctgt	14	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38403744	G	G	38403744	3	3	4	1	0	0	0	0	1	0	0	0	17998	275	10	5	83	5	ZNF37A	10	38403744	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	58668	38403744	97131003	1805	3829											
BMS1	9790	broad.mit.edu	37	chr10	43288497	43288497	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgctgtttaaatgagaagGagaagctggtttatgcgcct	13	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43288497	T	T	43288497	4	4	4	1	0	0	0	0	0	1	0	0	1478	1175	41	3	1020	3	BMS1	10	43288497	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4884753	43288497	92246250	1806	3830											
FXYD4	53828	broad.mit.edu	37	chr10	43871373	43871373	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgggaagtgaccatggaagGagagcaaggacttgcactcc	15	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43871373	A	A	43871373	1	1	4	0	1	0	0	0	0	0	0	0	6180	1189	41	4		4	FXYD4	10	43871373	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	582876	43871373	91663374	1807	3831											
TMEM72	643236	broad.mit.edu	37	chr10	45430239	45430239	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctgtgagcaccaccggctCtggggacacagagcaaacct	12	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45430239	T	T	45430239	3	4	4	1	0	0	0	0	1	0	0	0	16324	913	32	4	503	4	TMEM72	10	45430239	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1558866	45430239	90104508	1808	3832											
FAM21C	253725	broad.mit.edu	37	chr10	46222982	46222982	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggtcgctggcggccgacGcgggcgtgagaggcgggccc	21	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46222982	C	C	46222982	3	2	4	1	0	0	0	0	1	0	0	0	5589	1087	38	4	127	4	FAM21C	10	46222982	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	792743	46222982	89311765	1809	3833											
GPRIN2	9721	broad.mit.edu	37	chr10	47000059	47000059	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcatgacatgggaggtGtacggagctgcggtggacct	19	7	0	1	rs138975211		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47000059	T	T	47000059	2	4	4	1	0	0	0	0	0	0	0	1	6796	1364	48	3		3	GPRIN2	10	47000059	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	777077	47000059	88534688	1810	3834											
FRMPD2	143162	broad.mit.edu	37	chr10	49376600	49376600	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaaggggggcccaaccAgagccaggtagagagagtag	17	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49376600	T	T	49376600	1	4	4	0	1	0	0	0	0	0	0	0	6118	203	7	5		5	FRMPD2	10	49376600	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2376541	49376600	86158147	1811	3835											
C10orf71	118461	broad.mit.edu	37	chr10	50532407	50532407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccccttctatgtcaatgGggaggctgctgagagaagca	13	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50532407	T	T	50532407	3	4	4	1	0	0	0	0	1	0	0	0	1625	1232	43	2	1819	2	C10orf71	10	50532407	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1155807	50532407	85002340	1812	3836											
ERCC6	2074	broad.mit.edu	37	chr10	50736571	50736571	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatcttttttagctgttgttCcttgaatggtaaatatagaa	8	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50736571	A	A	50736571	4	1	4	1	0	0	0	0	0	1	0	0	5259	869	30	3	4009	3	ERCC6	10	50736571	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	204164	50736571	84798176	1813	3837											
SLC18A3	6572	broad.mit.edu	37	chr10	50818978	50818978	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgactacatcgcccacatGcgcgggggcggcgagggccc	15	17	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50818978	C	C	50818978	3	2	4	1	0	0	0	0	1	0	0	0	14540	1319	46	4	194	4	SLC18A3	10	50818978	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	82407	50818978	84715769	1814	3838											
CHAT	1103	broad.mit.edu	37	chr10	50835857	50835857	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgcagtgcccagcacatctCcatgcccatctcatgctcgt	7	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50835857	T	T	50835857	1	4	4	0	1	0	0	0	0	0	0	0	3344	870	30	4		4	CHAT	10	50835857	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	16879	50835857	84698890	1815	3839											
CHAT	1103	broad.mit.edu	37	chr10	50857733	50857733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctagggaccaccccgcCcttgcctactagctcccaag	7	20	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50857733	A	A	50857733	1	1	4	0	1	0	0	0	0	0	0	0	3344	638	22	2		2	CHAT	10	50857733	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	21876	50857733	84677014	1816	3840											
CHAT	1103	broad.mit.edu	37	chr10	50863408	50863408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagccttttaaaccccgcGctgcctctgtgttctgttga	9	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50863408	T	T	50863408	1	4	4	0	1	0	0	0	0	0	0	0	3344	1102	38	3		3	CHAT	10	50863408	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5675	50863408	84671339	1817	3841											
A1CF	29974	broad.mit.edu	37	chr10	52566492	52566492	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatttaaaaaagcatcttcaGaaggtgccatatccatcccc	5	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52566492	T	T	52566492	3	4	4	1	0	0	0	0	1	0	0	0	2	933	33	3	6	3	A1CF	10	52566492	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1703084	52566492	82968255	1818	3842											
PCDH15	65217	broad.mit.edu	37	chr10	55626410	55626410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttatctacttacgagtacatCggctttgccgctcagtccct	7	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55626410	A	A	55626410	3	1	4	1	0	0	0	0	1	0	0	0	11605	884	31	3	3805	3	PCDH15	10	55626410	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3059918	55626410	79908337	1819	3843											
ZWINT	11130	broad.mit.edu	37	chr10	58117794	58117794	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatagttgttcctgccagcaTatgaagatgaacaaatacac	7	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58117794	A	A	58117794	1	1	4	0	1	0	0	0	0	0	0	0	18378	1421	49	5		5	ZWINT	10	58117794	3'UTR	SNP	T	TCGA-05-4382-01A-01D-1265-08	2491384	58117794	77416953	1820	3844											
BICC1	80114	broad.mit.edu	37	chr10	60573624	60573624	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctttcacggtccaacagtcGtgagcacttgggaggtggaa	13	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60573624	C	C	60573624	3	2	4	1	0	0	0	0	1	0	0	0	1433	1145	40	4	2481	4	BICC1	10	60573624	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2455830	60573624	74961123	1821	3845											
SLC16A9	220963	broad.mit.edu	37	chr10	61432492	61432492	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaatgatgtgtatctcttGaaggttaggaaagtcatagt	11	3	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61432492	T	T	61432492	1	4	4	0	1	0	0	0	0	0	0	0	14528	1305	45	3		3	SLC16A9	10	61432492	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	858868	61432492	74102255	1822	3846											
ZNF365	22891	broad.mit.edu	37	chr10	64429928	64429928	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacaaggaactccagttAttgaatctaatctttctccc	4	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64429928	G	G	64429928	1	3	4	0	1	0	0	0	0	0	0	0	17995	464	16	5		5	ZNF365	10	64429928	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2997436	64429928	71104819	1823	3847											
HKDC1	80201	broad.mit.edu	37	chr10	71009880	71009880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacgcaggctcaagatgcCtgcccggggcccgggcactg	14	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71009880	A	A	71009880	1	1	4	0	1	0	0	0	0	0	0	0	7260	696	24	2		2	HKDC1	10	71009880	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	6579952	71009880	64524867	1824	3848											
KIAA1274	27143	broad.mit.edu	37	chr10	72285877	72285878	+	Missense_Mutation	DNP	CC	AA	AA													catcatccccaacaaggtggCccctgttgtgatcacgtgag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72285878	AA	AA	72285877	3	1	4	1	0	0	0	0	1	0	0	0	8290	739	26	3	172	3	KIAA1274	10	72285877	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	1275997	72285877	63248870	1825	3849											
ADAMTS14	140766	broad.mit.edu	37	chr10	72493775	72493775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagctggagctcagccGctacctcccgtaggtcattc	10	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72493775	T	T	72493775	3	4	4	1	0	0	0	0	1	0	0	0	259	1087	38	3	1382	3	ADAMTS14	10	72493775	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	207898	72493775	63040972	1826	3850											
UNC5B	219699	broad.mit.edu	37	chr10	73051452	73051452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgatttcgcccgggacaccCacttcctgcacctgcgcagc	10	18	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73051452	A	A	73051452	3	1	4	1	0	0	0	0	1	0	0	0	17118	594	21	2	1596	2	UNC5B	10	73051452	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	557677	73051452	62483295	1827	3851											
ECD	11319	broad.mit.edu	37	chr10	74912287	74912287	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttataagcttcatattcaTatgaaatgcaaagaagattc	5	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74912287	C	C	74912287	1	2	4	0	1	0	0	0	0	0	0	0	4928	1421	49	5		5	ECD	10	74912287	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1860835	74912287	60622460	1828	3852											
KCNMA1	3778	broad.mit.edu	37	chr10	78649330	78649330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accataacaaccaccatcctGggagacagcaaaagaacaga	7	12	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78649330	T	T	78649330	1	4	4	0	1	0	0	0	0	0	0	0	8143	1363	47	2		2	KCNMA1	10	78649330	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3737043	78649330	56885417	1829	3853											
KCNMA1	3778	broad.mit.edu	37	chr10	78850213	78850214	+	Missense_Mutation	DNP	CC	AA	AA													ccggtccttgtgcagaaagtCcttcaggaagttggaaacac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	78850214	AA	AA	78850213	3	1	4	1	0	0	0	0	1	0	0	0	8143	855	30	3	2679	3	KCNMA1	10	78850213	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	200883	78850213	56684534	1830	3854											
DLG5	9231	broad.mit.edu	37	chr10	79565393	79565393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagccccatctggagaGcccactggaaaatgagctca	10	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79565393	A	A	79565393	1	1	4	0	1	0	0	0	0	0	0	0	4598	986	34	4		4	DLG5	10	79565393	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	715180	79565393	55969354	1831	3855											
DLG5	9231	broad.mit.edu	37	chr10	79576624	79576624	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccctaccccccacaccaCcaggcctactgctgggctca	7	22	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79576624	A	A	79576624	1	1	4	0	1	0	0	0	0	0	0	0	4598	522	18	3		3	DLG5	10	79576624	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	11231	79576624	55958123	1832	3856											
C10orf57	80195	broad.mit.edu	37	chr10	81841801	81841801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtatctaagagtagtgtcGgttcaccttaaggcactttt	10	7	2	1	rs113339188		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81841801	A	A	81841801	1	1	4	0	1	0	0	0	0	0	0	0	1620	1131	39	4		4	C10orf57	10	81841801	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2265177	81841801	53692946	1833	3857											
NRG3	10718	broad.mit.edu	37	chr10	84733612	84733612	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcaagttttgtcggcccCcagtcattccctgaggtccc	10	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84733612	A	A	84733612	2	1	4	1	0	0	0	0	0	0	0	1	10744	610	22	2		2	NRG3	10	84733612	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2891811	84733612	50801135	1834	3858											
CDHR1	92211	broad.mit.edu	37	chr10	85970622	85970622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgacccttacaggaataGctggttggcagctgcgagga	15	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85970622	T	T	85970622	1	4	4	0	1	0	0	0	0	0	0	0	3148	986	34	3		3	CDHR1	10	85970622	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1237010	85970622	49564125	1835	3859											
LRIT2	340745	broad.mit.edu	37	chr10	85985202	85985202	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagcaagtgcatcctggCagacagaaaggctgagctgc	13	10	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85985202	A	A	85985202	2	1	4	1	0	0	0	0	0	0	0	1	9035	697	25	3		3	LRIT2	10	85985202	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	14580	85985202	49549545	1836	3860											
RGR	5995	broad.mit.edu	37	chr10	86007432	86007432	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccctgccacctactggtGctgagcttggctcttgcgga	11	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86007432	T	T	86007432	2	4	4	1	0	0	0	0	0	0	0	1	13400	1306	46	3		3	RGR	10	86007432	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	22230	86007432	49527315	1837	3861											
GRID1	2894	broad.mit.edu	37	chr10	87628918	87628918	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactatggaccagatccaggAtctccgggtcactgatttcc	9	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87628918	G	G	87628918	3	3	4	1	0	0	0	0	1	0	0	0	6837	333	12	5	2273	5	GRID1	10	87628918	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1621486	87628918	47905829	1838	3862											
AGAP11	119385	broad.mit.edu	37	chr10	88767359	88767359	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtattttactaaacaaatAttatactaagatattaacag	3	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88767359	T	T	88767359	1	4	4	0	1	0	0	0	0	0	0	0	367	464	16	5		5	AGAP11	10	88767359	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1138441	88767359	46767388	1839	3863											
IFIT1B	439996	broad.mit.edu	37	chr10	91144107	91144107	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagatggcctatgttgaccTggctgaaacgtatgcagaaa	12	7	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91144107	A	A	91144107	3	1	4	1	0	0	0	0	1	0	0	0	7592	1580	55	5	1043	5	IFIT1B	10	91144107	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2376748	91144107	44390640	1840	3864											
BTAF1	9044	broad.mit.edu	37	chr10	93716298	93716298	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttttagcaatgatagcactGatggggagccagaagaaaag	12	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93716298	T	T	93716298	3	4	4	1	0	0	0	0	1	0	0	0	1545	1290	45	3	741	3	BTAF1	10	93716298	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2572191	93716298	41818449	1841	3865											
MYOF	26509	broad.mit.edu	37	chr10	95088795	95088795	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaaaatctgcgctacactCtgactttggcctagaaatct	7	11	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95088795	T	T	95088795	1	4	4	0	1	0	0	0	0	0	0	0	10183	928	32	4		4	MYOF	10	95088795	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1372497	95088795	40445952	1842	3866											
PLCE1	51196	broad.mit.edu	37	chr10	96025811	96025811	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaccccagactcctttgaaGagcttatagagtaagctatt	8	9	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96025811	T	T	96025811	1	4	4	0	1	0	0	0	0	0	0	0	12129	957	33	3		3	PLCE1	10	96025811	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	937016	96025811	39508936	1843	3867											
PLCE1	51196	broad.mit.edu	37	chr10	96058058	96058058	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgctatgactgtttactggGatgttgttcaggtttatctt	10	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96058058	C	C	96058058	1	2	4	0	1	0	0	0	0	0	0	0	12129	1189	41	4		4	PLCE1	10	96058058	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	32247	96058058	39476689	1844	3868											
PLCE1	51196	broad.mit.edu	37	chr10	96081748	96081748	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccaagtgcatgatgttTctccagagcaacctcgaaca	8	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96081748	A	A	96081748	3	1	4	1	0	0	0	0	1	0	0	0	12129	1783	62	5	6833	5	PLCE1	10	96081748	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	23690	96081748	39452999	1845	3869											
SORBS1	10580	broad.mit.edu	37	chr10	97170585	97170585	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaaatataaaaagctagTgttaatgttttttaaaaaga	6	2	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97170585	C	C	97170585	1	2	4	0	1	0	0	0	0	0	0	0	15041	1711	59	5		5	SORBS1	10	97170585	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1088837	97170585	38364162	1846	3870											
TLL2	7093	broad.mit.edu	37	chr10	98165037	98165037	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcccggacctccacgtaatCataccagcacagtcggcttt	7	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98165037	A	A	98165037	3	1	4	1	0	0	0	0	1	0	0	0	16069	826	29	3	1876	3	TLL2	10	98165037	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	994452	98165037	37369710	1847	3871											
SLIT1	6585	broad.mit.edu	37	chr10	98820417	98820417	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccgtcatggtctcgggCaggttggccgggatggcagt	16	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98820417	A	A	98820417	2	1	4	1	0	0	0	0	0	0	0	1	14853	697	25	3		3	SLIT1	10	98820417	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	655380	98820417	36714330	1848	3872											
ARHGAP19	84986	broad.mit.edu	37	chr10	99019108	99019108	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtacagccatagaatgaGgcccagcccaagaaaaccaa	8	11	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99019108	A	A	99019108	1	1	4	0	1	0	0	0	0	0	0	0	871	1015	35	4		4	ARHGAP19	10	99019108	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	198691	99019108	36515639	1849	3873											
RRP12	23223	broad.mit.edu	37	chr10	99133323	99133323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcccccactcccacagccCacacgtacctgcctggcagc	7	22	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99133323	T	T	99133323	1	4	4	0	1	0	0	0	0	0	0	0	13797	609	21	4		4	RRP12	10	99133323	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	114215	99133323	36401424	1850	3874											
PI4K2A	55361	broad.mit.edu	37	chr10	99344715	99344715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctggggagatgtgagtgGccctttagccagagaccaag	15	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99344715	T	T	99344715	1	4	4	0	1	0	0	0	0	0	0	0	11966	1218	42	3		3	PI4K2A	10	99344715	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	211392	99344715	36190032	1851	3875											
C10orf28	27291	broad.mit.edu	37	chr10	99968101	99968101	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actaaatatcaatcctgataGaaaggagcataattgtagag	8	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99968101	T	T	99968101	3	4	4	1	0	0	0	0	1	0	0	0	1612	942	33	3	232	3	C10orf28	10	99968101	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	623386	99968101	35566646	1852	3876											
HPS1	3257	broad.mit.edu	37	chr10	100182214	100182214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaggcgccaccatctgcCcagtggtgcggtccacatag	14	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100182214	A	A	100182214	3	1	4	1	0	0	0	0	1	0	0	0	7406	623	22	2	463	2	HPS1	10	100182214	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	214113	100182214	35352533	1853	3877											
WNT8B	7479	broad.mit.edu	37	chr10	102238745	102238745	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtaattcttaccactcttGgaagcagaaacaagttggtg	9	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102238745	A	A	102238745	1	1	4	0	1	0	0	0	0	0	0	0	17524	1363	47	4		4	WNT8B	10	102238745	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2056531	102238745	33296002	1854	3878											
PAX2	5076	broad.mit.edu	37	chr10	102541090	102541090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatcctggggattcctcGctccaatggtgagaagagga	15	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102541090	T	T	102541090	3	4	4	1	0	0	0	0	1	0	0	0	11573	1087	38	3	602	3	PAX2	10	102541090	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	302345	102541090	32993657	1855	3879											
PPRC1	23082	broad.mit.edu	37	chr10	103899654	103899654	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaaagggcaggaagaagaaGagcaaggagcagccagcagc	16	8	0	3	rs148379078		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103899654	T	T	103899654	3	4	4	1	0	0	0	0	1	0	0	0	12511	933	33	3	1407	3	PPRC1	10	103899654	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1358564	103899654	31635093	1856	3880											
NFKB2	4791	broad.mit.edu	37	chr10	104160161	104160161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatctggcgctgcgggcaGgcgctggtgctcctgagctg	17	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104160161	T	T	104160161	3	4	4	1	0	0	0	0	1	0	0	0	10471	1000	35	2	1769	2	NFKB2	10	104160161	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	260507	104160161	31374586	1857	3881											
PDCD11	22984	broad.mit.edu	37	chr10	105162908	105162908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcgtattttgggttgcGtgaaagaggtgaatgaactg	15	3	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105162908	T	T	105162908	3	4	4	1	0	0	0	0	1	0	0	0	11711	1145	40	3	278	3	PDCD11	10	105162908	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1002747	105162908	30371839	1858	3882											
CALHM1	255022	broad.mit.edu	37	chr10	105217931	105217931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgccagggagacccagCgtgaagccatgcggcccctc	13	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105217931	A	A	105217931	1	1	4	0	1	0	0	0	0	0	0	0	2608	783	27	3		3	CALHM1	10	105217931	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	55023	105217931	30316816	1859	3883											
CCDC147	159686	broad.mit.edu	37	chr10	106118310	106118310	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcagagattgtagtgaAttctgcgaaggtcgccactg	12	7	1	2	rs139964001		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106118310	T	T	106118310	3	4	4	1	0	0	0	0	1	0	0	0	2807	101	4	5	227	5	CCDC147	10	106118310	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	900379	106118310	29416437	1860	3884											
SORCS3	22986	broad.mit.edu	37	chr10	106802769	106802769	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatctgtattcatgcccagCagtggttccttgagacttac	8	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106802769	G	G	106802769	1	3	4	0	1	0	0	0	0	0	0	0	15046	725	25	4		4	SORCS3	10	106802769	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	684459	106802769	28731978	1861	3885											
SORCS1	114815	broad.mit.edu	37	chr10	108447959	108447959	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagactcaccagcaagcaGtgcacggggtccccccttag	12	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108447959	C	C	108447959	3	2	4	1	0	0	0	0	1	0	0	0	15044	1020	36	4	2257	4	SORCS1	10	108447959	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1645190	108447959	27086788	1862	3886											
C10orf81	79949	broad.mit.edu	37	chr10	115526214	115526214	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatgaagtctgcaaacaaGattactttattaaatcacca	4	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115526214	A	A	115526214	3	1	4	1	0	0	0	0	1	0	0	0	1630	942	33	4	79	4	C10orf81	10	115526214	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7078255	115526214	20008533	1863	3887											
ATRNL1	26033	broad.mit.edu	37	chr10	117094016	117094016	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgtggagaatatatacTactacagaaaattttttact	6	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117094016	A	A	117094016	1	1	4	0	1	0	0	0	0	0	0	0	1211	1537	53	5		5	ATRNL1	10	117094016	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1567802	117094016	18440731	1864	3888											
ATRNL1	26033	broad.mit.edu	37	chr10	117221380	117221380	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcagtgtacaatatattgTaacctaaattttgcttttta	4	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117221380	A	A	117221380	1	1	4	0	1	0	0	0	0	0	0	0	1211	1653	57	5		5	ATRNL1	10	117221380	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	127364	117221380	18313367	1865	3889											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118196348	118196348	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacactcgtttcctgctcTacactatacacaatcccaat	2	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118196348	C	C	118196348	3	2	4	1	0	0	0	0	1	0	0	0	12247	1522	53	5	181	5	PNLIPRP3	10	118196348	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	974968	118196348	17338399	1866	3890											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118364828	118364828	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatctagaagagaaaacagCagcctggcattgtatggtaa	10	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118364828	G	G	118364828	1	3	4	0	1	0	0	0	0	0	0	0	12245	725	25	4		4	PNLIPRP1	10	118364828	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	168480	118364828	17169919	1867	3891											
VAX1	11023	broad.mit.edu	37	chr10	118896283	118896283	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagttttggggatggggGgcggggtgcggagcgcgacc	23	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118896283	A	A	118896283	1	1	4	0	1	0	0	0	0	0	0	0	17261	1247	43	4		4	VAX1	10	118896283	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	531455	118896283	16638464	1868	3892											
KCNK18	338567	broad.mit.edu	37	chr10	118960625	118960625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcggggcttgtctttaCcagcagaaccttttcctcaa	11	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118960625	A	A	118960625	1	1	4	0	1	0	0	0	0	0	0	0	8135	522	18	3		3	KCNK18	10	118960625	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	64342	118960625	16574122	1869	3893											
PDZD8	118987	broad.mit.edu	37	chr10	119043130	119043130	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctgtagcttatccaacatGaactctagtttctggatcct	6	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119043130	A	A	119043130	2	1	4	1	0	0	0	0	0	0	0	1	11799	1281	45	4		4	PDZD8	10	119043130	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	82505	119043130	16491617	1870	3894											
SFXN4	119559	broad.mit.edu	37	chr10	120920407	120920407	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcttcccaacccacttctGaaaattagaaccaactcacc	2	16	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120920407	A	A	120920407	1	1	4	0	1	0	0	0	0	0	0	0	14310	1305	45	4		4	SFXN4	10	120920407	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1877277	120920407	14614340	1871	3895											
TIAL1	7073	broad.mit.edu	37	chr10	121337349	121337349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatgcctcaggccgggcaCccagcactttgggaggctga	14	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121337349	A	A	121337349	1	1	4	0	1	0	0	0	0	0	0	0	16012	522	18	3		3	TIAL1	10	121337349	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	416942	121337349	14197398	1872	3896											
INPP5F	22876	broad.mit.edu	37	chr10	121557178	121557178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcaattattgggtttgCaaatgatgatttcagagaga	11	4	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121557178	A	A	121557178	1	1	4	0	1	0	0	0	0	0	0	0	7828	725	25	3		3	INPP5F	10	121557178	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	219829	121557178	13977569	1873	3897											
WDR11	55717	broad.mit.edu	37	chr10	122660514	122660514	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacgtggttttaagtgaagaGataatgaactcattcaaaat	8	4	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122660514	T	T	122660514	1	4	4	0	1	0	0	0	0	0	0	0	17400	957	33	3		3	WDR11	10	122660514	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1103336	122660514	12874233	1874	3898											
TACC2	10579	broad.mit.edu	37	chr10	123989798	123989798	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtggcacgttcatttctcgGatgtggaaaccattgacgtc	11	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123989798	T	T	123989798	1	4	4	0	1	0	0	0	0	0	0	0	15621	1189	41	3		3	TACC2	10	123989798	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1329284	123989798	11544949	1875	3899											
C10orf120	399814	broad.mit.edu	37	chr10	124457441	124457441	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctgcgatggaccgttcCggtttctttgcggggaggaa	16	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124457441	A	A	124457441	2	1	4	1	0	0	0	0	0	0	0	1	1601	639	23	1		1	C10orf120	10	124457441	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	467643	124457441	11077306	1876	3900											
OAT	4942	broad.mit.edu	37	chr10	126091575	126091575	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cataatcaacagccagccatCtaccagttctggccaatcct	5	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126091575	T	T	126091575	3	4	4	1	0	0	0	0	1	0	0	0	10898	913	32	4	514	4	OAT	10	126091575	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1634134	126091575	9443172	1877	3901											
PTPRE	5791	broad.mit.edu	37	chr10	129854559	129854559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctccccgtgactgcaGgccattcctggtgctcagag	12	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129854559	T	T	129854559	1	4	4	0	1	0	0	0	0	0	0	0	12908	1015	35	2		2	PTPRE	10	129854559	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3762984	129854559	5680188	1878	3902											
MKI67	4288	broad.mit.edu	37	chr10	129901357	129901357	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggaagctggccagatctTccaggggttgggccttttcc	13	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129901357	A	A	129901357	3	1	4	1	0	0	0	0	1	0	0	0	9691	1783	62	5	1035	5	MKI67	10	129901357	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	46798	129901357	5633390	1879	3903											
EBF3	253738	broad.mit.edu	37	chr10	131755543	131755543	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcaatgattacagggtctGagggcgtttcgtttctattg	12	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131755543	C	C	131755543	4	2	4	1	0	0	0	0	0	1	0	0	4922	1294	45	4	1166	4	EBF3	10	131755543	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1854186	131755543	3779204	1880	3904											
STK32C	282974	broad.mit.edu	37	chr10	134041649	134041649	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacctggagggcacagggcTgttcggcaggacgcctgagg	17	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134041649	A	A	134041649	1	1	4	0	1	0	0	0	0	0	0	0	15417	1595	55	5		5	STK32C	10	134041649	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2286106	134041649	1493098	1881	3905											
ADAM8	101	broad.mit.edu	37	chr10	135080912	135080912	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagggtgggctggacacagTgaccggaggctggaggagac	20	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135080912	G	G	135080912	3	3	4	1	0	0	0	0	1	0	0	0	252	1696	59	5	141	5	ADAM8	10	135080912	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1039263	135080912	453835	1882	3906											
B4GALNT4	338707	broad.mit.edu	37	chr11	376378	376378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgcagcgcccctggcccGcacccacctgcgcagggagc	13	20	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	376378	T	T	376378	1	4	4	0	1	0	0	0	0	0	0	0	1274	1102	38	3		3	B4GALNT4	11	376378	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08		376378	134630138	1883	3907											
C11orf35	256329	broad.mit.edu	37	chr11	557581	557581	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctagctcacctccccggtGggggcctgaatgttttcaga	12	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	557581	A	A	557581	2	1	4	1	0	0	0	0	0	0	0	1	1650	1335	47	4		4	C11orf35	11	557581	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	181203	557581	134448935	1884	3908											
PHRF1	57661	broad.mit.edu	37	chr11	607913	607913	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctcacccctcttctccatCaagaagacgaagcagctgcg	7	17	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	607913	G	G	607913	3	3	4	1	0	0	0	0	1	0	0	0	11956	816	29	4	2504	4	PHRF1	11	607913	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	50332	607913	134398603	1885	3909											
TMEM80	283232	broad.mit.edu	37	chr11	702964	702964	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaccaggggcaacctgacAgaggctgagaggccgctggc	17	12	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	702964	G	G	702964	2	3	4	1	0	0	0	0	0	0	0	1	16327	175	7	5		5	TMEM80	11	702964	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	95051	702964	134303552	1886	3910											
LRDD	55367	broad.mit.edu	37	chr11	799386	799386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggggccaagcccatgcgtCggatgctgtcctggtacttg	15	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	799386	A	A	799386	3	1	4	1	0	0	0	0	1	0	0	0	9023	884	31	3	82	3	LRDD	11	799386	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	96422	799386	134207130	1887	3911											
MUC2	4583	broad.mit.edu	37	chr11	1085878	1085878	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgctgctggccctggggaCgcgtgagccctgcgggaccc	17	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1085878	G	G	1085878	1	3	4	0	1	0	0	0	0	0	0	0	10069	551	19	4		4	MUC2	11	1085878	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	286492	1085878	133920638	1888	3912											
MUC2	4583	broad.mit.edu	37	chr11	1099680	1099680	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtgtccatggaggctgGgaccaggaggctgaccaccc	16	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1099680	C	C	1099680	1	2	4	0	1	0	0	0	0	0	0	0	10069	1247	43	4		4	MUC2	11	1099680	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	13802	1099680	133906836	1889	3913											
MUC2	4583	broad.mit.edu	37	chr11	1101705	1101705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggaggaggctgccgccCggggtggggtggctgtaagg	23	8	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1101705	A	A	1101705	1	1	4	0	1	0	0	0	0	0	0	0	10069	667	23	1		1	MUC2	11	1101705	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2025	1101705	133904811	1890	3914											
CARS	833	broad.mit.edu	37	chr11	3026715	3026715	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctctgtgggccgtccccActgcggggccagccctgccc	15	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3026715	C	C	3026715	1	2	4	0	1	0	0	0	0	0	0	0	2683	174	6	5		5	CARS	11	3026715	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1925010	3026715	131979801	1891	3915											
CARS	833	broad.mit.edu	37	chr11	3047864	3047864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacacaacccaggctgggcCaggagggagagcccacatgc	13	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3047864	A	A	3047864	1	1	4	0	1	0	0	0	0	0	0	0	2683	609	21	2		2	CARS	11	3047864	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	21149	3047864	131958652	1892	3916											
ART1	417	broad.mit.edu	37	chr11	3682645	3682645	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccatctggataattcaggTaagggctgcaggcacctgtg	13	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3682645	A	A	3682645	5	1	4	1	0	0	0	0	0	0	1	0	1001	1652	57	5	898	5	ART1	11	3682645	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	634781	3682645	131323871	1893	3917											
NUP98	4928	broad.mit.edu	37	chr11	3781911	3781911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattaagacacacaccaaaCtaaatacaggttacctcagg	5	10	1	1	rs16929774	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3781911	A	A	3781911	1	1	4	0	1	0	0	0	0	0	0	0	10868	580	20	3		3	NUP98	11	3781911	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	99266	3781911	131224605	1894	3918											
TRIM21	6737	broad.mit.edu	37	chr11	4409789	4409789	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagggaaagggagaggtgGtttttatgaaaatctcccaa	12	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4409789	A	A	4409789	1	1	4	0	1	0	0	0	0	0	0	0	16619	1276	44	4		4	TRIM21	11	4409789	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	627878	4409789	130596727	1895	3919											
OR52K1	390036	broad.mit.edu	37	chr11	4510987	4510987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttctatctccttttccCacccatggtcaatcctatca	2	14	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4510987	A	A	4510987	3	1	4	1	0	0	0	0	1	0	0	0	11217	594	21	2	859	2	OR52K1	11	4510987	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	101198	4510987	130495529	1896	3920											
OR51S1	119692	broad.mit.edu	37	chr11	4869790	4869790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagaaaataagcagggggtCcaaacccatggctgaaagaa	12	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4869790	A	A	4869790	3	1	4	1	0	0	0	0	1	0	0	0	11199	855	30	3	325	3	OR51S1	11	4869790	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	358803	4869790	130136726	1897	3921											
OR51A7	119687	broad.mit.edu	37	chr11	4928835	4928835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtccctctcctcccttcCtaccatgttgagggtcttct	6	17	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4928835	A	A	4928835	3	1	4	1	0	0	0	0	1	0	0	0	11182	681	24	2	238	2	OR51A7	11	4928835	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	59045	4928835	130077681	1898	3922											
OR51G1	79324	broad.mit.edu	37	chr11	4945678	4945678	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagatcagccagtaaggaAgcatctgcagatggcatagg	12	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4945678	C	C	4945678	1	2	4	0	1	0	0	0	0	0	0	0	11192	87	3	5		5	OR51G1	11	4945678	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	16843	4945678	130060838	1899	3923											
MMP26	56547	broad.mit.edu	37	chr11	5013214	5013214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatataatctgttcctggttGcaactcatgagattgggcat	10	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5013214	A	A	5013214	3	1	4	1	0	0	0	0	1	0	0	0	9757	1319	46	4	634	4	MMP26	11	5013214	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	67536	5013214	129993302	1900	3924											
HBD	3045	broad.mit.edu	37	chr11	5255522	5255522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttctctgtctacacatgCccagtttccatttgcctcct	5	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5255522	A	A	5255522	1	1	4	0	1	0	0	0	0	0	0	0	7045	754	26	3		3	HBD	11	5255522	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	242308	5255522	129750994	1901	3925											
HBE1	3046	broad.mit.edu	37	chr11	5290849	5290849	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggatggcagagggagaCgacaggtttccaaagctgtc	14	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5290849	A	A	5290849	2	1	4	1	0	0	0	0	0	0	0	1	7046	523	19	3		3	HBE1	11	5290849	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	35327	5290849	129715667	1902	3926											
TRIM6-TRIM34	445372	broad.mit.edu	37	chr11	5653697	5653697	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactgtgagcaacaaggagGcagtgaccagcatgggagga	15	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5653697	A	A	5653697	3	1	4	1	0	0	0	0	1	0	0	0	16659	1203	42	4	1228	4	TRIM6-TRIM34	11	5653697	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	362848	5653697	129352819	1903	3927											
TRIM22	10346	broad.mit.edu	37	chr11	5740815	5740815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatcagctatgaaggatGcctggttcagctgttcttca	11	8	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5740815	T	T	5740815	1	4	4	0	1	0	0	0	0	0	0	0	16620	1334	46	3		3	TRIM22	11	5740815	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	87118	5740815	129265701	1904	3928											
OR52N5	390075	broad.mit.edu	37	chr11	5799384	5799384	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaatcatcagcaatacacCcctcaggaaggtggcaagct	10	11	3	0	rs143269628		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5799384	T	T	5799384	3	4	4	1	0	0	0	0	1	0	0	0	11224	623	22	4	497	4	OR52N5	11	5799384	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	58569	5799384	129207132	1905	3929											
OR52E4	390081	broad.mit.edu	37	chr11	5906024	5906024	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtgtttctcattctgcgtCtgccattctgtgggcataac	9	10	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5906024	A	A	5906024	3	1	4	1	0	0	0	0	1	0	0	0	11210	912	32	3	504	3	OR52E4	11	5906024	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	106640	5906024	129100492	1906	3930											
OR56A4	120793	broad.mit.edu	37	chr11	6023680	6023680	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacacagacaggttactgcaGatgcagttcttgattatgtt	10	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6023680	C	C	6023680	3	2	4	1	0	0	0	0	1	0	0	0	11229	932	33	4	400	4	OR56A4	11	6023680	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	117656	6023680	128982836	1907	3931											
CCKBR	887	broad.mit.edu	37	chr11	6292387	6292387	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgggatccggctcccggCccacccaggccaagctgctg	14	18	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6292387	T	T	6292387	3	4	4	1	0	0	0	0	1	0	0	0	2909	739	26	4	976	4	CCKBR	11	6292387	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	268707	6292387	128714129	1908	3932											
DCHS1	8642	broad.mit.edu	37	chr11	6662548	6662548	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgggctgtacggacgacCccactgtgttcgtcaatggc	12	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6662548	A	A	6662548	2	1	4	1	0	0	0	0	0	0	0	1	4320	610	22	2		2	DCHS1	11	6662548	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	370161	6662548	128343968	1909	3933											
OR6A2	8590	broad.mit.edu	37	chr11	6816982	6816982	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcaggagatgagagtagaGagtcttcagtaggccacaac	12	8	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6816982	T	T	6816982	1	4	4	0	1	0	0	0	0	0	0	0	11280	957	33	3		3	OR6A2	11	6816982	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	154434	6816982	128189534	1910	3934											
OR10A4	283297	broad.mit.edu	37	chr11	6898191	6898191	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccactcagatgtatttcTtcttcttttttggggctgct	9	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6898191	G	G	6898191	3	3	4	1	0	0	0	0	1	0	0	0	10986	1609	56	5	315	5	OR10A4	11	6898191	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	81209	6898191	128108325	1911	3935											
OR2D3	120775	broad.mit.edu	37	chr11	6942258	6942258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttttcttgtgccaaaCaggtaaacaggcaaaaatat	6	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6942258	A	A	6942258	3	1	4	1	0	0	0	0	1	0	0	0	11089	478	17	3	28	3	OR2D3	11	6942258	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	44067	6942258	128064258	1912	3936											
NLRP14	338323	broad.mit.edu	37	chr11	7060938	7060938	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatgatcctatcggaacctGttgcagggtcggcccagact	11	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7060938	C	C	7060938	1	2	4	0	1	0	0	0	0	0	0	0	10571	1392	48	4		4	NLRP14	11	7060938	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	118680	7060938	127945578	1913	3937											
NLRP14	338323	broad.mit.edu	37	chr11	7064401	7064401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtacttgtctgaagcagCaaatggagaagggtggtgat	14	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7064401	A	A	7064401	3	1	4	1	0	0	0	0	1	0	0	0	10571	711	25	3	1154	3	NLRP14	11	7064401	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3463	7064401	127942115	1914	3938											
OR5P2	120065	broad.mit.edu	37	chr11	7818246	7818246	+	Frame_Shift_Del	DEL	G	-	-													gactgtatttctctccaccaGgaagtttacaagcatgttgg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7818246	-	-	7818246	7	5	4	1	0	1	0	1	0	0	0	0	11272	991	35	0	728	0	OR5P2	11	7818246	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	753845	7818246	127188270	1915	3939											
NLRP10	338322	broad.mit.edu	37	chr11	7982364	7982364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccttgggactcaaaccCctcttcttcaacttttcttc	3	16	6	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7982364	A	A	7982364	3	1	4	1	0	0	0	0	1	0	0	0	10567	622	22	2	1176	2	NLRP10	11	7982364	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	164118	7982364	127024152	1916	3940											
NLRP10	338322	broad.mit.edu	37	chr11	7982526	7982526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctctccagcagcaggacCacttctttgcagcttacata	7	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7982526	A	A	7982526	2	1	4	1	0	0	0	0	0	0	0	1	10567	581	21	2		2	NLRP10	11	7982526	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	162	7982526	127023990	1917	3941											
RIC3	79608	broad.mit.edu	37	chr11	8132302	8132302	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgtatatgctttatcGgtgctgatgcccaacccttc	8	13	0	1	rs17852022	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8132302	A	A	8132302	2	1	4	1	0	0	0	0	0	0	0	1	13463	1103	39	4		4	RIC3	11	8132302	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	149776	8132302	126874214	1918	3942											
RPL27A	6157	broad.mit.edu	37	chr11	8704488	8704488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcgcatggccgcctgcGgggcagggtggccggcgcgg	22	13	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8704488	T	T	8704488	1	4	4	0	1	0	0	0	0	0	0	0	13687	1131	39	1		1	RPL27A	11	8704488	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	572186	8704488	126302028	1919	3943											
C11orf17	56672	broad.mit.edu	37	chr11	8938818	8938818	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgggcacaaatcagtgttCtacttgtctcttcagagaaa	8	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8938818	G	G	8938818	1	3	4	0	1	0	0	0	0	0	0	0	1643	928	32	4		4	C11orf17	11	8938818	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	234330	8938818	126067698	1920	3944											
ASCL3	56676	broad.mit.edu	37	chr11	8959435	8959435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttccgggtgaaggctgGcccgtaggagtactcgcacc	13	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8959435	T	T	8959435	3	4	4	1	0	0	0	0	1	0	0	0	1039	1203	42	3	275	3	ASCL3	11	8959435	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	20617	8959435	126047081	1921	3945											
GALNTL4	374378	broad.mit.edu	37	chr11	11314629	11314629	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctttggcgtagctgcattCgatgagccggggccggctgt	17	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11314629	A	A	11314629	4	1	4	1	0	0	0	0	0	1	0	0	6285	893	31	3	207	3	GALNTL4	11	11314629	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2355194	11314629	123691887	1922	3946											
USP47	55031	broad.mit.edu	37	chr11	11957904	11957904	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgtcgccttgttaaatatGatgagtttcatgattatcta	8	6	2	3	rs36096029		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11957904	T	T	11957904	3	4	4	1	0	0	0	0	1	0	0	0	17205	1290	45	3	1782	3	USP47	11	11957904	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	643275	11957904	123048612	1923	3947											
MICALCL	84953	broad.mit.edu	37	chr11	12341401	12341401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggccttggctggtgggGgctgcttaccatccagattt	15	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12341401	T	T	12341401	1	4	4	0	1	0	0	0	0	0	0	0	9665	1247	43	2		2	MICALCL	11	12341401	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	383497	12341401	122665115	1924	3948											
SPON1	10418	broad.mit.edu	37	chr11	14282211	14282211	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggaagggcatgcgaaccCgacagcggatgctcaagtct	15	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14282211	A	A	14282211	2	1	4	1	0	0	0	0	0	0	0	1	15200	644	23	1		1	SPON1	11	14282211	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1940810	14282211	120724305	1925	3949											
CALCA	796	broad.mit.edu	37	chr11	14992806	14992806	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaagttctaggagcccacaGaccttggctcctatcctggt	10	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14992806	T	T	14992806	1	4	4	0	1	0	0	0	0	0	0	0	2601	957	33	3		3	CALCA	11	14992806	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	710595	14992806	120013710	1926	3950											
SOX6	55553	broad.mit.edu	37	chr11	16117639	16117640	+	Frame_Shift_Ins	INS	-	T	T													gccctttagcctttggttaaINStttgtgggtgggagacatga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16117640	T	T	16117639	7	5	4	1	0	1	1	0	0	0	0	0	15069	101	4	0	1556	0	SOX6	11	16117639	Frame_Shift_Ins	INS	-	TCGA-05-4382-01A-01D-1265-08	1124833	16117639	118888877	1927	3951											
SOX6	55553	broad.mit.edu	37	chr11	16133313	16133313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaacatgcagatctgagCatttggaaaagaatgttaaa	8	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16133313	A	A	16133313	1	1	4	0	1	0	0	0	0	0	0	0	15069	725	25	3		3	SOX6	11	16133313	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	15674	16133313	118873203	1928	3952											
SOX6	55553	broad.mit.edu	37	chr11	16340125	16340125	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcacggtcccgactcccTtcgtcaggcttatgtggtga	10	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16340125	G	G	16340125	3	3	4	1	0	0	0	0	1	0	0	0	15069	1606	56	5	2272	5	SOX6	11	16340125	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	206812	16340125	118666391	1929	3953											
PIK3C2A	5286	broad.mit.edu	37	chr11	17172116	17172116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttcacactagcattttctCcgcatatgtttctttgtgct	5	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17172116	A	A	17172116	3	1	4	1	0	0	0	0	1	0	0	0	12004	855	30	3	3924	3	PIK3C2A	11	17172116	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	831991	17172116	117834400	1930	3954											
ABCC8	6833	broad.mit.edu	37	chr11	17428936	17428936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctgcagaaggccatccCtcgaggacatggcacgagat	11	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17428936	A	A	17428936	3	1	4	1	0	0	0	0	1	0	0	0	58	681	24	2	1924	2	ABCC8	11	17428936	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	256820	17428936	117577580	1931	3955											
TPH1	7166	broad.mit.edu	37	chr11	18048061	18048061	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggggtatagaagggatctGaactgtgtctcacatattga	12	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18048061	A	A	18048061	3	1	4	1	0	0	0	0	1	0	0	0	16525	1294	45	4	575	4	TPH1	11	18048061	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	619125	18048061	116958455	1932	3956											
GTF2H1	2965	broad.mit.edu	37	chr11	18369250	18369250	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccatggtcctggcagctgGactcagaaaacagttaagta	11	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18369250	C	C	18369250	3	2	4	1	0	0	0	0	1	0	0	0	6925	1174	41	4	979	4	GTF2H1	11	18369250	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	321189	18369250	116637266	1933	3957											
LDHC	3948	broad.mit.edu	37	chr11	18436751	18436751	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatttggctgatgaacttgcCcttgttgatgttgcattgga	12	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18436751	G	G	18436751	2	3	4	1	0	0	0	0	0	0	0	1	8774	610	22	4		4	LDHC	11	18436751	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	67501	18436751	116569765	1934	3958											
LDHC	3948	broad.mit.edu	37	chr11	18467701	18467701	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcttgaagaatattatGttttctctgggttgacttat	10	4	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18467701	A	A	18467701	1	1	4	0	1	0	0	0	0	0	0	0	8774	1392	48	4		4	LDHC	11	18467701	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	30950	18467701	116538815	1935	3959											
PRMT3	10196	broad.mit.edu	37	chr11	20429516	20429516	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttgctgctaaagctggGgcgaagaaggttcttggagt	15	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20429516	T	T	20429516	2	4	4	1	0	0	0	0	0	0	0	1	12644	1219	43	2		2	PRMT3	11	20429516	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1961815	20429516	114577000	1936	3960											
SLC6A5	9152	broad.mit.edu	37	chr11	20639475	20639475	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagctgtgagacacccagGggcggttgctttggggagca	17	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20639475	A	A	20639475	1	1	4	0	1	0	0	0	0	0	0	0	14801	1247	43	4		4	SLC6A5	11	20639475	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	209959	20639475	114367041	1937	3961											
SLC6A5	9152	broad.mit.edu	37	chr11	20673895	20673896	+	Missense_Mutation	DNP	CC	AA	AA													cctatggctcttaccgctatCctaactggtccatggtgctc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20673896	AA	AA	20673895	3	1	4	1	0	0	0	0	1	0	0	0	14801	855	30	3	2189	3	SLC6A5	11	20673895	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	34420	20673895	114332621	1938	3962											
ANO5	203859	broad.mit.edu	37	chr11	22296138	22296138	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattgttgcatttacgtcAgacatcattccccgtctagt	6	10	3	1	rs61746201	byFrequency;by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22296138	T	T	22296138	2	4	4	1	0	0	0	0	0	0	0	1	700	175	7	5		5	ANO5	11	22296138	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	1622243	22296138	112710378	1939	3963											
SLC17A6	57084	broad.mit.edu	37	chr11	22397614	22397614	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcttggtacttgcagtgGgattcagtggatttgctata	11	6	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22397614	T	T	22397614	4	4	4	1	0	0	0	0	0	1	0	0	14534	1233	43	2	1299	2	SLC17A6	11	22397614	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	101476	22397614	112608902	1940	3964											
ANO3	63982	broad.mit.edu	37	chr11	26463539	26463539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatccctgccttgcctcGcccagagctacgcttactca	9	16	1	2	rs150999282		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26463539	T	T	26463539	3	4	4	1	0	0	0	0	1	0	0	0	698	1087	38	3	127	3	ANO3	11	26463539	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4065925	26463539	108542977	1941	3965											
ANO3	63982	broad.mit.edu	37	chr11	26538272	26538272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagtgtcagtgatcatgCatagtcaaggggacaatgtt	11	6	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26538272	A	A	26538272	1	1	4	0	1	0	0	0	0	0	0	0	698	725	25	3		3	ANO3	11	26538272	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	74733	26538272	108468244	1942	3966											
ANO3	63982	broad.mit.edu	37	chr11	26552826	26552826	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgacaagtcagcttttcCagacctagaggagtcagact	9	10	3	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26552826	G	G	26552826	3	3	4	1	0	0	0	0	1	0	0	0	698	594	21	4	842	4	ANO3	11	26552826	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	14554	26552826	108453690	1943	3967											
ANO3	63982	broad.mit.edu	37	chr11	26612914	26612914	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacatcagagcatgggctagCaggctggtccaggggtctgc	15	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26612914	G	G	26612914	1	3	4	0	1	0	0	0	0	0	0	0	698	725	25	4		4	ANO3	11	26612914	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	60088	26612914	108393602	1944	3968											
ANO3	63982	broad.mit.edu	37	chr11	26669343	26669343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattacttctgattacatccCacgttttgtttatgaataca	4	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26669343	A	A	26669343	3	1	4	1	0	0	0	0	1	0	0	0	698	594	21	2	2610	2	ANO3	11	26669343	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	56429	26669343	108337173	1945	3969											
LIN7C	55327	broad.mit.edu	37	chr11	27523283	27523283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttaagaaatgttgaaccCaaatttagagtattatctga	6	5	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27523283	A	A	27523283	1	1	4	0	1	0	0	0	0	0	0	0	8885	609	21	2		2	LIN7C	11	27523283	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	853940	27523283	107483233	1946	3970											
KIF18A	81930	broad.mit.edu	37	chr11	28058003	28058003	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatggtttcattaaggttacTgtagacggattttgaaaagc	11	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28058003	A	A	28058003	2	1	4	1	0	0	0	0	0	0	0	1	8350	1567	55	5		5	KIF18A	11	28058003	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	534720	28058003	106948513	1947	3971											
METT5D1	196074	broad.mit.edu	37	chr11	28135249	28135249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacaattcagtggcctttaGtatacagatgaatcccaact	6	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28135249	T	T	28135249	1	4	4	0	1	0	0	0	0	0	0	0	9585	1044	36	3		3	METT5D1	11	28135249	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	77246	28135249	106871267	1948	3972											
DCDC1	341019	broad.mit.edu	37	chr11	31327816	31327816	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaactctggcaaagactGttctagatccatttttgtaa	7	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31327816	A	A	31327816	3	1	4	1	0	0	0	0	1	0	0	0	4317	1377	48	4	530	4	DCDC1	11	31327816	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3192567	31327816	103678700	1949	3973											
PAX6	5080	broad.mit.edu	37	chr11	31812322	31812322	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtctgcatatgtgggggGgtgtaggtatcataactccg	15	6	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31812322	T	T	31812322	2	4	4	1	0	0	0	0	0	0	0	1	11577	1219	43	2		2	PAX6	11	31812322	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	484506	31812322	103194194	1950	3974											
PAX6	5080	broad.mit.edu	37	chr11	31822341	31822341	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttagtttatcatacatgcCgtctgcgcccatctgttgct	7	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31822341	T	T	31822341	3	4	4	1	0	0	0	0	1	0	0	0	11577	652	23	4	875	4	PAX6	11	31822341	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	10019	31822341	103184175	1951	3975											
WT1	7490	broad.mit.edu	37	chr11	32413568	32413568	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttcaggtggtcggaccggGagaactttcgctgacaagtt	13	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32413568	A	A	32413568	3	1	4	1	0	0	0	0	1	0	0	0	17535	1174	41	4	179	4	WT1	11	32413568	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	591227	32413568	102592948	1952	3976											
DEPDC7	91614	broad.mit.edu	37	chr11	33055090	33055090	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtaagcgtggaagctctAaatttgaaactgtacttaat	8	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33055090	T	T	33055090	1	4	4	0	1	0	0	0	0	0	0	0	4484	377	13	5		5	DEPDC7	11	33055090	3'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	641522	33055090	101951426	1953	3977											
HIPK3	10114	broad.mit.edu	37	chr11	33360519	33360519	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtttttaagtttttcaaatGaaactgattctattttcaac	4	5	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33360519	T	T	33360519	1	4	4	0	1	0	0	0	0	0	0	0	7185	1305	45	3		3	HIPK3	11	33360519	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	305429	33360519	101645997	1954	3978											
FBXO3	26273	broad.mit.edu	37	chr11	33792333	33792333	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtcttctccacagcggatCatgacttgatagctggctaa	9	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33792333	A	A	33792333	3	1	4	1	0	0	0	0	1	0	0	0	5796	826	29	3	1316	3	FBXO3	11	33792333	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	431814	33792333	101214183	1955	3979											
LMO2	4005	broad.mit.edu	37	chr11	33881003	33881003	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctacacagaaatgcttctGacaggcggcgcatttgaaac	9	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33881003	C	C	33881003	3	2	4	1	0	0	0	0	1	0	0	0	8926	1299	45	4	104	4	LMO2	11	33881003	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	88670	33881003	101125513	1956	3980											
TRAF6	7189	broad.mit.edu	37	chr11	36518591	36518591	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatctactgctaacccccTcaagtacacatttaagaaca	3	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36518591	C	C	36518591	1	2	4	0	1	0	0	0	0	0	0	0	16569	1566	54	5		5	TRAF6	11	36518591	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2637588	36518591	98487925	1957	3981											
RAG2	5897	broad.mit.edu	37	chr11	36614951	36614951	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggattgcactggagacagaGattcctcctggcaagactgt	12	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36614951	T	T	36614951	2	4	4	1	0	0	0	0	0	0	0	1	13113	932	33	3		3	RAG2	11	36614951	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	96360	36614951	98391565	1958	3982											
CHST1	8534	broad.mit.edu	37	chr11	45671848	45671848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgttcacctcgggcacgCgcaccgtcttgatggccacg	13	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45671848	A	A	45671848	3	1	4	1	0	0	0	0	1	0	0	0	3428	768	27	3	613	3	CHST1	11	45671848	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	9056897	45671848	89334668	1959	3983											
DGKZ	8525	broad.mit.edu	37	chr11	46393118	46393118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgcagccgtggtcatcCcgcccacctggatcctccgc	9	20	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46393118	A	A	46393118	3	1	4	1	0	0	0	0	1	0	0	0	4514	623	22	2	1765	2	DGKZ	11	46393118	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	721270	46393118	88613398	1960	3984											
CKAP5	9793	broad.mit.edu	37	chr11	46786657	46786657	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatacaagcaaaaatctccTgacgattcttaatccttcct	3	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46786657	C	C	46786657	1	2	4	0	1	0	0	0	0	0	0	0	3476	1595	55	5		5	CKAP5	11	46786657	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	393539	46786657	88219859	1961	3985											
LRP4	4038	broad.mit.edu	37	chr11	46907542	46907542	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacttgaagtgaagacagaaGtggtccaggagagacactgg	15	6	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46907542	C	C	46907542	1	2	4	0	1	0	0	0	0	0	0	0	9046	1044	36	4		4	LRP4	11	46907542	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	120885	46907542	88098974	1962	3986											
LRP4	4038	broad.mit.edu	37	chr11	46921855	46921855	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctcacagtcgttgtcccCgtcacacacccaggagcggc	9	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46921855	T	T	46921855	3	4	4	1	0	0	0	0	1	0	0	0	9046	652	23	4	5587	4	LRP4	11	46921855	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	14313	46921855	88084661	1963	3987											
MYBPC3	4607	broad.mit.edu	37	chr11	47367733	47367733	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctagcctgtgccctctcCtctcccctctgaggaagggc	12	16	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47367733	G	G	47367733	1	3	4	0	1	0	0	0	0	0	0	0	10107	696	24	4		4	MYBPC3	11	47367733	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	445878	47367733	87638783	1964	3988											
NDUFS3	4722	broad.mit.edu	37	chr11	47605770	47605770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtaaccgagaggaatggGctggggaagtcaccaatagc	14	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47605770	T	T	47605770	1	4	4	0	1	0	0	0	0	0	0	0	10388	1218	42	3		3	NDUFS3	11	47605770	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	238037	47605770	87400746	1965	3989											
OR4X1	390113	broad.mit.edu	37	chr11	48285915	48285915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccagctcccgttctgtgGccccaacatcatggaccact	7	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48285915	T	T	48285915	3	4	4	1	0	0	0	0	1	0	0	0	11178	1203	42	3	505	3	OR4X1	11	48285915	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	680145	48285915	86720601	1966	3990											
OR4A47	403253	broad.mit.edu	37	chr11	48510574	48510574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattcttcatccatttcccCcagattgatttcaggcttgt	5	11	3	2	rs150039172		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48510574	A	A	48510574	3	1	4	1	0	0	0	0	1	0	0	0	11136	623	22	2	232	2	OR4A47	11	48510574	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	224659	48510574	86495942	1967	3991											
OR4A16	81327	broad.mit.edu	37	chr11	55110916	55110916	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccatgtcacccaaattgatGatagacttactctgtgataa	7	9	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55110916	T	T	55110916	3	4	4	1	0	0	0	0	1	0	0	0	11135	1290	45	3	242	3	OR4A16	11	55110916	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6600342	55110916	79895600	1968	3992											
OR4A15	81328	broad.mit.edu	37	chr11	55136382	55136382	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttagctgggaaatggctGtatcactcatgagaatgtga	12	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55136382	A	A	55136382	2	1	4	1	0	0	0	0	0	0	0	1	11134	1364	48	4		4	OR4A15	11	55136382	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	25466	55136382	79870134	1969	3993											
OR4C16	219428	broad.mit.edu	37	chr11	55339919	55339919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttcatcccatgtctttGgctgcctggagatcttcatc	7	12	5	1	rs144938325		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55339919	T	T	55339919	3	4	4	1	0	0	0	0	1	0	0	0	11143	1348	47	2	318	2	OR4C16	11	55339919	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	203537	55339919	79666597	1970	3994											
OR4P4	81300	broad.mit.edu	37	chr11	55405850	55405850	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccatggaaaaaagcaataAtagcactttgtttattctct	6	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55405850	G	G	55405850	3	3	4	1	0	0	0	0	1	0	0	0	11174	101	4	5	19	5	OR4P4	11	55405850	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	65931	55405850	79600666	1971	3995											
OR4P4	81300	broad.mit.edu	37	chr11	55406188	55406188	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctcacagggatggcctatGaccgctatgtggccatttgc	11	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55406188	T	T	55406188	3	4	4	1	0	0	0	0	1	0	0	0	11174	1290	45	3	357	3	OR4P4	11	55406188	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	338	55406188	79600328	1972	3996											
OR4P4	81300	broad.mit.edu	37	chr11	55406302	55406302	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttatacattctgccagtCagtttcttctcaccatcttt	4	11	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55406302	G	G	55406302	3	3	4	1	0	0	0	0	1	0	0	0	11174	827	29	4	471	4	OR4P4	11	55406302	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	114	55406302	79600214	1973	3997											
OR4C6	219432	broad.mit.edu	37	chr11	55433201	55433202	+	Missense_Mutation	DNP	TG	CT	CT													ttcagttgttgacacttgccTgcacggacacccacatcctg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	55433202	CT	CT	55433201	3	2	4	1	0	0	0	0	1	0	0	0	11146	1580	55	5	561	5	OR4C6	11	55433201	Missense_Mutation	DNP	TG	TCGA-05-4382-01A-01D-1265-08	26899	55433201	79573315	1974	3998											
OR5D13	390142	broad.mit.edu	37	chr11	55541279	55541279	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttagcagcgatggcttaTgaccgttttgtggcagtttg	13	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55541279	C	C	55541279	2	2	4	1	0	0	0	0	0	0	0	1	11248	1471	51	5		5	OR5D13	11	55541279	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	108078	55541279	79465237	1975	3999											
OR5D14	219436	broad.mit.edu	37	chr11	55563543	55563543	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctctccggttaaacttctCtggacctaatgtaatcaacc	6	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563543	A	A	55563543	3	1	4	1	0	0	0	0	1	0	0	0	11249	913	32	3	514	3	OR5D14	11	55563543	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	22264	55563543	79442973	1976	4000											
OR5D16	390144	broad.mit.edu	37	chr11	55606961	55606961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtcttctccacctgtgcctCccacctgactgccatcacca	5	19	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55606961	A	A	55606961	3	1	4	1	0	0	0	0	1	0	0	0	11250	855	30	3	736	3	OR5D16	11	55606961	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	43418	55606961	79399555	1977	4001											
SPRYD5	84767	broad.mit.edu	37	chr11	55648317	55648317	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtgaccgtccaaatccGccccatatcactgcaacacc	7	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55648317	C	C	55648317	1	2	4	0	1	0	0	0	0	0	0	0	15229	1102	38	4		4	SPRYD5	11	55648317	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	41356	55648317	79358199	1978	4002											
SPRYD5	84767	broad.mit.edu	37	chr11	55653030	55653030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccctgtttgtacctcaaCtggcaagacacggcagttct	10	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55653030	A	A	55653030	3	1	4	1	0	0	0	0	1	0	0	0	15229	564	20	3	128	3	SPRYD5	11	55653030	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4713	55653030	79353486	1979	4003											
SPRYD5	84767	broad.mit.edu	37	chr11	55653337	55653337	+	Intron	SNP	C	A	A													taagtgatgcctctgaagatCtatttctatacaggacacat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55653337	A	A	55653337	1	1	4	0	1	0	0	0	0	0	0	0	15229	928	32	3		3	SPRYD5	11	55653337	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	307	55653337	79353179	1980	4004	11	2									
SPRYD5	84767	broad.mit.edu	37	chr11	55653339	55653339	+	Intron	SNP	A	T	T													agtgatgcctctgaagatctAtttctatacaggacacatga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55653339	T	T	55653339	1	4	4	0	1	0	0	0	0	0	0	0	15229	464	16	5		5	SPRYD5	11	55653339	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2	55653339	79353177	1981	4005	11	2									
SPRYD5	84767	broad.mit.edu	37	chr11	55659225	55659225	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttaatgtctttagttgCattctaatgtcatcaaaact	4	6	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55659225	A	A	55659225	1	1	4	0	1	0	0	0	0	0	0	0	15229	725	25	3		3	SPRYD5	11	55659225	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	5886	55659225	79347291	1982	4006											
OR5W2	390148	broad.mit.edu	37	chr11	55681905	55681905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgtgtgaagttggtaatCcattctgattaaaactatca	9	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55681905	A	A	55681905	3	1	4	1	0	0	0	0	1	0	0	0	11279	855	30	3	780	3	OR5W2	11	55681905	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	22680	55681905	79324611	1983	4007											
OR5AS1	219447	broad.mit.edu	37	chr11	55798241	55798241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagtgccttatcctggCagcaatggcttatgaccgct	11	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55798241	A	A	55798241	3	1	4	1	0	0	0	0	1	0	0	0	11240	710	25	3	349	3	OR5AS1	11	55798241	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	116336	55798241	79208275	1984	4008											
OR8J3	81168	broad.mit.edu	37	chr11	55904794	55904794	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagccgccgagacaccaccAccatgtagagcagagggtta	12	12	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55904794	G	G	55904794	3	3	4	1	0	0	0	0	1	0	0	0	11336	159	6	5	548	5	OR8J3	11	55904794	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	106553	55904794	79101722	1985	4009											
OR8K5	219453	broad.mit.edu	37	chr11	55926935	55926935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaagctgtaaatcaaagGgttaagcatggggattacta	10	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55926935	T	T	55926935	3	4	4	1	0	0	0	0	1	0	0	0	11339	1232	43	2	67	2	OR8K5	11	55926935	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	22141	55926935	79079581	1986	4010											
OR5J2	282775	broad.mit.edu	37	chr11	55944330	55944330	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcatctgcaattgcaccCaaaatgctggtgaacctcct	6	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944330	A	A	55944330	2	1	4	1	0	0	0	0	0	0	0	1	11259	581	21	2		2	OR5J2	11	55944330	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	17395	55944330	79062186	1987	4011											
OR5J2	282775	broad.mit.edu	37	chr11	55944912	55944912	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggaacaagagaaagtGgtttctatgttctatacgct	10	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55944912	T	T	55944912	2	4	4	1	0	0	0	0	0	0	0	1	11259	1335	47	2		2	OR5J2	11	55944912	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	582	55944912	79061604	1988	4012											
OR9I1	219954	broad.mit.edu	37	chr11	57886814	57886814	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaagaagggtgactaggtAgaaactcagaaacaccagaa	10	9	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57886814	G	G	57886814	3	3	4	1	0	0	0	0	1	0	0	0	11347	420	15	5	845	5	OR9I1	11	57886814	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1941902	57886814	77119702	1989	4013											
OR1S2	219958	broad.mit.edu	37	chr11	57970994	57970994	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgagtacaaaggggaagatGataactgataaacccacaat	9	6	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57970994	C	C	57970994	3	2	4	1	0	0	0	0	1	0	0	0	11067	1280	45	4	320	4	OR1S2	11	57970994	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	84180	57970994	77035522	1990	4014											
OR1S2	219958	broad.mit.edu	37	chr11	57971380	57971380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattcaccagcattttggGgactgagttggaaatggagg	13	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57971380	T	T	57971380	3	4	4	1	0	0	0	0	1	0	0	0	11067	1232	43	2	706	2	OR1S2	11	57971380	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	386	57971380	77035136	1991	4015											
OR5B12	390191	broad.mit.edu	37	chr11	58207340	58207340	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaagaagaattgtgtggcAcaagcattatataatatgaa	9	3	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58207340	C	C	58207340	3	2	4	1	0	0	0	0	1	0	0	0	11242	157	6	5	663	5	OR5B12	11	58207340	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	235960	58207340	76799176	1992	4016											
MS4A10	341116	broad.mit.edu	37	chr11	60558592	60558592	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaaggcaaaacacagaccGggtgtgggagtctgcaaggc	15	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60558592	A	A	60558592	1	1	4	0	1	0	0	0	0	0	0	0	9949	1131	39	4		4	MS4A10	11	60558592	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2351252	60558592	74447924	1993	4017											
CD6	923	broad.mit.edu	37	chr11	60781206	60781206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcatggacgcaccagcgGggagaaccagactgtgcatg	14	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60781206	T	T	60781206	1	4	4	0	1	0	0	0	0	0	0	0	3058	1247	43	2		2	CD6	11	60781206	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	222614	60781206	74225310	1994	4018											
CD5	921	broad.mit.edu	37	chr11	60885946	60885946	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcactctctgggcctgaccTgcttaggtgggtaactagcc	12	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60885946	A	A	60885946	3	1	4	1	0	0	0	0	1	0	0	0	3051	1580	55	5	404	5	CD5	11	60885946	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	104740	60885946	74120570	1995	4019											
VWCE	220001	broad.mit.edu	37	chr11	61045799	61045799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaacatccggtcttttccCcttcctctaaaacccccaaa	2	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61045799	A	A	61045799	1	1	4	0	1	0	0	0	0	0	0	0	17372	638	22	2		2	VWCE	11	61045799	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	159853	61045799	73960717	1996	4020											
FADS2	9415	broad.mit.edu	37	chr11	61632457	61632457	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccctcccctccacacaCgtggcaccccactgggcaca	7	21	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61632457	T	T	61632457	1	4	4	0	1	0	0	0	0	0	0	0	5412	551	19	4		4	FADS2	11	61632457	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	586658	61632457	73374059	1997	4021											
INTS5	80789	broad.mit.edu	37	chr11	62417535	62417535	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaggcaacttacctttccTgtatgagctttgccttttat	7	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62417535	A	A	62417535	1	1	4	0	1	0	0	0	0	0	0	0	7851	1595	55	5		5	INTS5	11	62417535	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	785078	62417535	72588981	1998	4022											
NXF1	10482	broad.mit.edu	37	chr11	62572875	62572875	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcgctggccgctacgccGgcaaacaacctaactcccaa	9	17	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62572875	A	A	62572875	1	1	4	0	1	0	0	0	0	0	0	0	10877	1131	39	4		4	NXF1	11	62572875	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	155340	62572875	72433641	1999	4023											
RASGRP2	10235	broad.mit.edu	37	chr11	64503151	64503151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttggctatggaaatggtcGggcctgagctagggccagag	18	7	0	2	rs112436682		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64503151	T	T	64503151	1	4	4	0	1	0	0	0	0	0	0	0	13183	1131	39	1		1	RASGRP2	11	64503151	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1930276	64503151	70503365	2000	4024											
ARL2	402	broad.mit.edu	37	chr11	64789247	64789247	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcatccagggctgcagcGccgtcaccggggagaacctg	16	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64789247	A	A	64789247	3	1	4	1	0	0	0	0	1	0	0	0	937	1087	38	4	493	4	ARL2	11	64789247	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	286096	64789247	70217269	2001	4025											
CAPN1	823	broad.mit.edu	37	chr11	64977757	64977757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaacccctcccccatcctGttgggcaggggctgcgcctc	10	20	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64977757	T	T	64977757	1	4	4	0	1	0	0	0	0	0	0	0	2648	1392	48	3		3	CAPN1	11	64977757	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	188510	64977757	70028759	2002	4026											
PCNXL3	399909	broad.mit.edu	37	chr11	65402380	65402380	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcctctgcttggatcactCtgaagccttacccctgggtc	10	14	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65402380	G	G	65402380	1	3	4	0	1	0	0	0	0	0	0	0	11687	928	32	4		4	PCNXL3	11	65402380	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	424623	65402380	69604136	2003	4027											
OVOL1	5017	broad.mit.edu	37	chr11	65554911	65554911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggaactggagcgagctcCccgacgaggagcgcggcgag	18	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65554911	A	A	65554911	3	1	4	1	0	0	0	0	1	0	0	0	11420	623	22	2	69	2	OVOL1	11	65554911	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	152531	65554911	69451605	2004	4028											
SNX32	254122	broad.mit.edu	37	chr11	65618895	65618895	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggactccccccaccccTaccctctccctgtgcctgta	7	20	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65618895	A	A	65618895	1	1	4	0	1	0	0	0	0	0	0	0	15016	1537	53	5		5	SNX32	11	65618895	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	63984	65618895	69387621	2005	4029											
CATSPER1	117144	broad.mit.edu	37	chr11	65793261	65793261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttggagcccgctaaggtggGaagcctcgctgtggtggaag	18	8	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65793261	T	T	65793261	3	4	4	1	0	0	0	0	1	0	0	0	2713	1174	41	3	1800	3	CATSPER1	11	65793261	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	174366	65793261	69213255	2006	4030											
NPAS4	266743	broad.mit.edu	37	chr11	66190662	66190662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtatggactgctgcaccCcgaggacctggcccacgctt	12	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66190662	A	A	66190662	3	1	4	1	0	0	0	0	1	0	0	0	10660	623	22	2	785	2	NPAS4	11	66190662	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	397401	66190662	68815854	2007	4031											
SYT12	91683	broad.mit.edu	37	chr11	66797764	66797764	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgccattaatgtcttcaCtgtcaaggacagtcagtgac	8	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66797764	G	G	66797764	1	3	4	0	1	0	0	0	0	0	0	0	15587	580	20	4		4	SYT12	11	66797764	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	607102	66797764	68208752	2008	4032											
KDM2A	22992	broad.mit.edu	37	chr11	66947681	66947681	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttgttacttttatggaAggaaaaggtcagtattgttt	9	2	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66947681	C	C	66947681	3	2	4	1	0	0	0	0	1	0	0	0	8194	69	3	5	180	5	KDM2A	11	66947681	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	149917	66947681	68058835	2009	4033											
CABP4	57010	broad.mit.edu	37	chr11	67226161	67226161	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatatctgttgcccctgCggccccagacaccagccaga	11	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67226161	A	A	67226161	1	1	4	0	1	0	0	0	0	0	0	0	2559	783	27	3		3	CABP4	11	67226161	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	278480	67226161	67780355	2010	4034											
TBX10	347853	broad.mit.edu	37	chr11	67402363	67402363	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagtccatgcccaggatctTcacctggaagggggggaaca	15	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67402363	C	C	67402363	3	2	4	1	0	0	0	0	1	0	0	0	15773	1792	62	5	880	5	TBX10	11	67402363	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	176202	67402363	67604153	2011	4035											
CTTN	2017	broad.mit.edu	37	chr11	70255878	70255878	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttcttatttatcataccagGaggcaaagctgcacgtctgt	9	9	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70255878	T	T	70255878	1	4	4	0	1	0	0	0	0	0	0	0	4078	1189	41	3		3	CTTN	11	70255878	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2853515	70255878	64750638	2012	4036											
DHCR7	1717	broad.mit.edu	37	chr11	71150017	71150017	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggttgatgagggtccaggCgacgatcccggggcgcccat	16	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71150017	G	G	71150017	3	3	4	1	0	0	0	0	1	0	0	0	4517	768	27	4	700	4	DHCR7	11	71150017	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	894139	71150017	63856499	2013	4037											
PDE2A	5138	broad.mit.edu	37	chr11	72308502	72308502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacctggagtgcaggggcCacagtccctccctgcccctg	12	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72308502	A	A	72308502	1	1	4	0	1	0	0	0	0	0	0	0	11730	609	21	2		2	PDE2A	11	72308502	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1158485	72308502	62698014	2014	4038											
C2CD3	26005	broad.mit.edu	37	chr11	73814209	73814209	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaccggttgtgttgtgccCcatgcgatgacagatctggt	13	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73814209	G	G	73814209	3	3	4	1	0	0	0	0	1	0	0	0	2176	624	22	4	3416	4	C2CD3	11	73814209	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1505707	73814209	61192307	2015	4039											
PGM2L1	283209	broad.mit.edu	37	chr11	74058429	74058429	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattacaaaacctcttacCtttgatataattaaaaacaa	2	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74058429	A	A	74058429	1	1	4	0	1	0	0	0	0	0	0	0	11894	696	24	2		2	PGM2L1	11	74058429	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	244220	74058429	60948087	2016	4040											
OR2AT4	341152	broad.mit.edu	37	chr11	74799863	74799863	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctgcctttacatccctgTttctcagcgtgtaaatgagg	10	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74799863	A	A	74799863	3	1	4	1	0	0	0	0	1	0	0	0	11081	1725	60	5	69	5	OR2AT4	11	74799863	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	741434	74799863	60206653	2017	4041											
SLCO2B1	11309	broad.mit.edu	37	chr11	74842614	74842614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggttcatgagaacaggGtattgcagtgggtggcagat	17	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74842614	T	T	74842614	1	4	4	0	1	0	0	0	0	0	0	0	14841	1276	44	3		3	SLCO2B1	11	74842614	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	42751	74842614	60163902	2018	4042											
MOGAT2	80168	broad.mit.edu	37	chr11	75431352	75431352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggaggcaggagctaggGcttccgctactatgtgacct	15	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75431352	T	T	75431352	1	4	4	0	1	0	0	0	0	0	0	0	9789	1218	42	3		3	MOGAT2	11	75431352	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	588738	75431352	59575164	2019	4043											
UVRAG	7405	broad.mit.edu	37	chr11	75718702	75718702	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaaaatatttttcgttttGaaaagatgatttctgtatga	7	3	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75718702	A	A	75718702	1	1	4	0	1	0	0	0	0	0	0	0	17235	1305	45	4		4	UVRAG	11	75718702	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	287350	75718702	59287814	2020	4044											
MYO7A	4647	broad.mit.edu	37	chr11	76869483	76869483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagtatgagggtgaggCtgcgccacactcgccctgcc	13	15	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76869483	A	A	76869483	1	1	4	0	1	0	0	0	0	0	0	0	10176	812	28	3		3	MYO7A	11	76869483	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1150781	76869483	58137033	2021	4045											
MYO7A	4647	broad.mit.edu	37	chr11	76900538	76900538	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggtgcctggcctcctGgagtgggaaggggagctagg	20	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76900538	A	A	76900538	1	1	4	0	1	0	0	0	0	0	0	0	10176	1363	47	4		4	MYO7A	11	76900538	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	31055	76900538	58105978	2022	4046											
INTS4	92105	broad.mit.edu	37	chr11	77671418	77671419	+	Missense_Mutation	DNP	CC	AA	AA													ttgtttggtgtaatttcagtCctctttcatggagctgcaac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	77671419	AA	AA	77671418	3	1	4	1	0	0	0	0	1	0	0	0	7850	855	30	3	2286	3	INTS4	11	77671418	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	770880	77671418	57335098	2023	4047											
ODZ4	26011	broad.mit.edu	37	chr11	78413441	78413441	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaagtctgtgggccactccAggtgaacctgacaatgaaga	11	10	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78413441	T	T	78413441	3	4	4	1	0	0	0	0	1	0	0	0	10932	188	7	5	4120	5	ODZ4	11	78413441	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	742023	78413441	56593075	2024	4048											
ODZ4	26011	broad.mit.edu	37	chr11	78437147	78437147	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgaatgttgagggcatgaTgtttgtctaggctccatcct	11	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78437147	A	A	78437147	3	1	4	1	0	0	0	0	1	0	0	0	10932	1464	51	5	4830	5	ODZ4	11	78437147	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	23706	78437147	56569369	2025	4049											
DLG2	1740	broad.mit.edu	37	chr11	83180436	83180436	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttataaaacaaaaaatgAtaaaattaaggtgcatttat	4	3	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83180436	T	T	83180436	1	4	4	0	1	0	0	0	0	0	0	0	4595	348	12	5		5	DLG2	11	83180436	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	4743289	83180436	51826080	2026	4050											
DLG2	1740	broad.mit.edu	37	chr11	83878159	83878159	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catagacttggagagtcagtCaaatagattaaacttttcag	8	6	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83878159	A	A	83878159	1	1	4	0	1	0	0	0	0	0	0	0	4595	841	29	3		3	DLG2	11	83878159	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	697723	83878159	51128357	2027	4051											
DLG2	1740	broad.mit.edu	37	chr11	84028240	84028240	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctctgcacagaaatgtctCctccctcacacccctttctt	4	17	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84028240	A	A	84028240	1	1	4	0	1	0	0	0	0	0	0	0	4595	870	30	3		3	DLG2	11	84028240	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	150081	84028240	50978276	2028	4052											
SYTL2	54843	broad.mit.edu	37	chr11	85456886	85456886	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctacaactctcttatcagctCttatcactgaagccttgaac	4	13	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85456886	A	A	85456886	1	1	4	0	1	0	0	0	0	0	0	0	15602	928	32	3		3	SYTL2	11	85456886	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1428646	85456886	49549630	2029	4053											
SYTL2	54843	broad.mit.edu	37	chr11	85468567	85468567	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccataaattcagtcttcgAgtcagaactaccacttatag	5	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85468567	T	T	85468567	1	4	4	0	1	0	0	0	0	0	0	0	15602	319	11	5		5	SYTL2	11	85468567	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	11681	85468567	49537949	2030	4054											
TMEM135	65084	broad.mit.edu	37	chr11	86802403	86802403	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttttaaaattatttgcaGgagagggctgctcacaattt	8	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86802403	T	T	86802403	5	4	4	1	0	0	0	0	0	0	1	0	16174	1014	35	2	376	2	TMEM135	11	86802403	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	1333836	86802403	48204113	2031	4055											
GRM5	2915	broad.mit.edu	37	chr11	88330421	88330421	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttttcttggaccatacTtcatcatcatccatttttaa	3	10	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88330421	C	C	88330421	2	2	4	1	0	0	0	0	0	0	0	1	6866	1606	56	5		5	GRM5	11	88330421	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	1528018	88330421	46676095	2032	4056											
FOLH1B	219595	broad.mit.edu	37	chr11	89403612	89403612	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgacgagaatttacaatgtGataggtactctcagaggagc	12	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89403612	A	A	89403612	2	1	4	1	0	0	0	0	0	0	0	1	6038	1277	45	4		4	FOLH1B	11	89403612	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1073191	89403612	45602904	2033	4057											
FOLH1B	219595	broad.mit.edu	37	chr11	89405207	89405207	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagcaaaaaaaccaacctAtctgagtctcagtttagtct	5	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89405207	T	T	89405207	1	4	4	0	1	0	0	0	0	0	0	0	6038	464	16	5		5	FOLH1B	11	89405207	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1595	89405207	45601309	2034	4058											
FOLH1B	219595	broad.mit.edu	37	chr11	89424067	89424067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaaacaaacaaattcagCggctatccactgtatcacag	7	10	2	0	rs145208476		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89424067	A	A	89424067	3	1	4	1	0	0	0	0	1	0	0	0	6038	767	27	3	751	3	FOLH1B	11	89424067	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	18860	89424067	45582449	2035	4059											
NAALAD2	10003	broad.mit.edu	37	chr11	89882210	89882210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgaaccaccaccagatGgctatgagaatgttacaaat	7	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89882210	T	T	89882210	3	4	4	1	0	0	0	0	1	0	0	0	10222	1348	47	2	432	2	NAALAD2	11	89882210	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	458143	89882210	45124306	2036	4060											
NAALAD2	10003	broad.mit.edu	37	chr11	89907012	89907012	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccccagccctgatgatggGtttgagagtaaatcactgta	10	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89907012	T	T	89907012	2	4	4	1	0	0	0	0	0	0	0	1	10222	1248	44	3		3	NAALAD2	11	89907012	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	24802	89907012	45099504	2037	4061											
C11orf75	56935	broad.mit.edu	37	chr11	93268772	93268772	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccaaagaaaggtactgtgGagggctttgagcctgcagac	13	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93268772	A	A	93268772	1	1	4	0	1	0	0	0	0	0	0	0	1675	1189	41	4		4	C11orf75	11	93268772	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3361760	93268772	41737744	2038	4062											
HEPHL1	341208	broad.mit.edu	37	chr11	93796927	93796927	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaactagggagttgaaatgTgaataagattcaggtcttat	11	3	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93796927	A	A	93796927	1	1	4	0	1	0	0	0	0	0	0	0	7122	1711	59	5		5	HEPHL1	11	93796927	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	528155	93796927	41209589	2039	4063											
HEPHL1	341208	broad.mit.edu	37	chr11	93800625	93800625	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtcccagtcgcctctgcAggggagtctcttccactagc	11	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93800625	T	T	93800625	1	4	4	0	1	0	0	0	0	0	0	0	7122	203	7	5		5	HEPHL1	11	93800625	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	3698	93800625	41205891	2040	4064											
HEPHL1	341208	broad.mit.edu	37	chr11	93839147	93839147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggttattttcttatcaCcttttaaagccattaatgga	5	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93839147	A	A	93839147	1	1	4	0	1	0	0	0	0	0	0	0	7122	522	18	3		3	HEPHL1	11	93839147	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	38522	93839147	41167369	2041	4065											
GPR83	10888	broad.mit.edu	37	chr11	94129655	94129655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctgacatggcacatgccCttcccaaatatccatgtgct	8	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94129655	A	A	94129655	3	1	4	1	0	0	0	0	1	0	0	0	6778	680	24	2	860	2	GPR83	11	94129655	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	290508	94129655	40876861	2042	4066											
KDM4D	55693	broad.mit.edu	37	chr11	94731346	94731346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataactcaggaggctggagaGttcatggtgacctttcccta	11	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731346	T	T	94731346	3	4	4	1	0	0	0	0	1	0	0	0	8201	1020	36	3	812	3	KDM4D	11	94731346	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	601691	94731346	40275170	2043	4067											
KDM4D	55693	broad.mit.edu	37	chr11	94731482	94731482	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgtagctgtggggaggcaAgggtgaccttttccatggat	16	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731482	T	T	94731482	3	4	4	1	0	0	0	0	1	0	0	0	8201	63	3	5	948	5	KDM4D	11	94731482	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	136	94731482	40275034	2044	4068											
CNTN5	53942	broad.mit.edu	37	chr11	99715818	99715818	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcttctgattttttcctaaGatggcttcgaaatggaacag	9	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99715818	T	T	99715818	5	4	4	1	0	0	0	0	0	0	1	0	3676	956	33	3	415	3	CNTN5	11	99715818	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	4984336	99715818	35290698	2045	4069											
TRPC6	7225	broad.mit.edu	37	chr11	101353888	101353888	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaatggtccacgcattatCttccccatctgccacaacac	5	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101353888	A	A	101353888	3	1	4	1	0	0	0	0	1	0	0	0	16708	912	32	3	1529	3	TRPC6	11	101353888	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1638070	101353888	33652628	2046	4070											
TRPC6	7225	broad.mit.edu	37	chr11	101374853	101374853	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agacaatgacaggtaagccgGacttgccaggcctttatagg	12	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101374853	T	T	101374853	3	4	4	1	0	0	0	0	1	0	0	0	16708	1174	41	3	1996	3	TRPC6	11	101374853	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	20965	101374853	33631663	2047	4071											
DYNC2H1	79659	broad.mit.edu	37	chr11	102992159	102992159	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggtgatgcatctggaccActttctggcaaaaatctttc	8	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102992159	T	T	102992159	2	4	4	1	0	0	0	0	0	0	0	1	4886	146	6	5		5	DYNC2H1	11	102992159	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	1617306	102992159	32014357	2048	4072											
DYNC2H1	79659	broad.mit.edu	37	chr11	102992199	102992199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagttgtcaacagtataGtttgggttcgccagttggaa	12	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102992199	T	T	102992199	3	4	4	1	0	0	0	0	1	0	0	0	4886	1029	36	3	1497	3	DYNC2H1	11	102992199	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	40	102992199	32014317	2049	4073											
DYNC2H1	79659	broad.mit.edu	37	chr11	103270430	103270430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaagtgcctcctcctaacGatcgacaaggatctccaata	7	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103270430	T	T	103270430	3	4	4	1	0	0	0	0	1	0	0	0	4886	1058	37	3	12555	3	DYNC2H1	11	103270430	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	278231	103270430	31736086	2050	4074											
DDI1	414301	broad.mit.edu	37	chr11	103908038	103908038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtccctgctcaaggaacGcaaccctcccttggcggaag	10	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103908038	T	T	103908038	3	4	4	1	0	0	0	0	1	0	0	0	4361	1087	38	3	490	3	DDI1	11	103908038	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	637608	103908038	31098478	2051	4075											
CASP4	837	broad.mit.edu	37	chr11	104815446	104815446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactctcttatttatttcaCataccaccaacaactctcaa	0	14	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104815446	A	A	104815446	1	1	4	0	1	0	0	0	0	0	0	0	2699	493	17	3		3	CASP4	11	104815446	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	907408	104815446	30191070	2052	4076											
CASP4	837	broad.mit.edu	37	chr11	104817989	104817989	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgttcatatttttgttttGagaatgtttttaaaaagaaa	6	1	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104817989	C	C	104817989	1	2	4	0	1	0	0	0	0	0	0	0	2699	1305	45	4		4	CASP4	11	104817989	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2543	104817989	30188527	2053	4077											
CASP4	837	broad.mit.edu	37	chr11	104821732	104821732	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catccctgtgatgtcaaagtCagctccattcctcggaggca	9	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104821732	A	A	104821732	3	1	4	1	0	0	0	0	1	0	0	0	2699	826	29	3	687	3	CASP4	11	104821732	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3743	104821732	30184784	2054	4078											
CASP1	834	broad.mit.edu	37	chr11	104972166	104972166	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctcctcccttcttgtGtaagctgaaactgaaagcat	6	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104972166	T	T	104972166	1	4	4	0	1	0	0	0	0	0	0	0	2694	1392	48	3		3	CASP1	11	104972166	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	150434	104972166	30034350	2055	4079											
CARD18	59082	broad.mit.edu	37	chr11	105010532	105010532	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatccttttaggcagggcGtgtacacagatcaatgaaca	9	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105010532	A	A	105010532	1	1	4	0	1	0	0	0	0	0	0	0	2675	1160	40	4		4	CARD18	11	105010532	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	38366	105010532	29995984	2056	4080											
NPAT	4863	broad.mit.edu	37	chr11	108044227	108044227	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtaactgagattcactcGgtacatttgaagacaaagag	10	7	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108044227	C	C	108044227	3	2	4	1	0	0	0	0	1	0	0	0	10661	1116	39	4	2823	4	NPAT	11	108044227	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3033695	108044227	26962289	2057	4081											
ATM	472	broad.mit.edu	37	chr11	108153533	108153533	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttggaatggctaaatcttCaagatactgaatacaactta	6	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108153533	T	T	108153533	4	4	4	1	0	0	0	0	0	1	0	0	1113	827	29	4	3767	4	ATM	11	108153533	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	109306	108153533	26852983	2058	4082											
EXPH5	23086	broad.mit.edu	37	chr11	108383973	108383973	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcattaaaaccaaacccgTtgctcttggctgagtcctgg	9	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108383973	C	C	108383973	3	2	4	1	0	0	0	0	1	0	0	0	5365	1725	60	5	3712	5	EXPH5	11	108383973	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	230440	108383973	26622543	2059	4083											
RDX	5962	broad.mit.edu	37	chr11	110128497	110128497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactaatttacttacttgtcGtcatgctcataaatattcag	4	8	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110128497	T	T	110128497	3	4	4	1	0	0	0	0	1	0	0	0	13306	1136	40	3	1090	3	RDX	11	110128497	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1744524	110128497	24878019	2060	4084											
SDHD	6392	broad.mit.edu	37	chr11	111957821	111957821	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagcaatgaccactgtagtCtaggggtccagatgtttacc	10	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111957821	G	G	111957821	1	3	4	0	1	0	0	0	0	0	0	0	14080	928	32	4		4	SDHD	11	111957821	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1829324	111957821	23048695	2061	4085											
BCO2	83875	broad.mit.edu	37	chr11	112050130	112050130	+	Frame_Shift_Del	DEL	G	-	-													gggcatctctgctcgagtctGgggacattttcctaagtggc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112050130	-	-	112050130	7	5	4	1	0	1	0	1	0	0	0	0	1390	1357	47	0	224	0	BCO2	11	112050130	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	92309	112050130	22956386	2062	4086											
DRD2	1813	broad.mit.edu	37	chr11	113287585	113287585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaaaagcagaatgtacCtgcgttattgagtccgaaga	9	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113287585	A	A	113287585	3	1	4	1	0	0	0	0	1	0	0	0	4797	695	24	2	819	2	DRD2	11	113287585	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1237455	113287585	21718931	2063	4087											
HTR3A	3359	broad.mit.edu	37	chr11	113860404	113860404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccgtgctggacaagctGctattccacatttacctgct	9	13	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113860404	T	T	113860404	2	4	4	1	0	0	0	0	0	0	0	1	7514	1306	46	3		3	HTR3A	11	113860404	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	572819	113860404	21146112	2064	4088											
CEP164	22897	broad.mit.edu	37	chr11	117257898	117257898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaaccctgtgatgatatGccattccccacccatggtag	7	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117257898	T	T	117257898	1	4	4	0	1	0	0	0	0	0	0	0	3279	1334	46	3		3	CEP164	11	117257898	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3397494	117257898	17748618	2065	4089											
CEP164	22897	broad.mit.edu	37	chr11	117261501	117261501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccatctcagttccttgaGggagcggctgcagaaagcca	11	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117261501	T	T	117261501	3	4	4	1	0	0	0	0	1	0	0	0	3279	1000	35	2	1997	2	CEP164	11	117261501	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3603	117261501	17745015	2066	4090											
FXYD6	53826	broad.mit.edu	37	chr11	117711949	117711949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctggcttggccacagCagggccaagggtctgtgcag	16	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117711949	A	A	117711949	1	1	4	0	1	0	0	0	0	0	0	0	6182	725	25	3		3	FXYD6	11	117711949	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	450448	117711949	17294567	2067	4091											
SCN2B	6327	broad.mit.edu	37	chr11	118037853	118037853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggaaaggggcctcccCcatcaccccactacccgtgg	12	17	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118037853	A	A	118037853	1	1	4	0	1	0	0	0	0	0	0	0	14030	638	22	2		2	SCN2B	11	118037853	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	325904	118037853	16968663	2068	4092											
CD3G	917	broad.mit.edu	37	chr11	118223284	118223284	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaagtctagctcccttccCtaagcggctataagcatcag	7	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118223284	T	T	118223284	1	4	4	0	1	0	0	0	0	0	0	0	3043	696	24	4		4	CD3G	11	118223284	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	185431	118223284	16783232	2069	4093											
ABCG4	64137	broad.mit.edu	37	chr11	119027493	119027493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagagatctcaccgtcgcCtgccttccccacacacccaa	7	18	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119027493	A	A	119027493	1	1	4	0	1	0	0	0	0	0	0	0	70	696	24	2		2	ABCG4	11	119027493	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	804209	119027493	15979023	2070	4094											
CCDC153	283152	broad.mit.edu	37	chr11	119063892	119063892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaggcctttgacttcttcCtccagctgcttgctgcgggt	11	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119063892	A	A	119063892	3	1	4	1	0	0	0	0	1	0	0	0	2814	680	24	2	326	2	CCDC153	11	119063892	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	36399	119063892	15942624	2071	4095											
PVRL1	5818	broad.mit.edu	37	chr11	119549087	119549087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgccccgaggtcacaggCctctggatgaacagggaggg	15	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119549087	A	A	119549087	1	1	4	0	1	0	0	0	0	0	0	0	12947	754	26	3		3	PVRL1	11	119549087	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	485195	119549087	15457429	2072	4096											
OAF	220323	broad.mit.edu	37	chr11	120097704	120097704	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccggttctggctggagcaAggtcagctgggagctgggca	18	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120097704	G	G	120097704	2	3	4	1	0	0	0	0	0	0	0	1	10893	86	3	5		5	OAF	11	120097704	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	548617	120097704	14908812	2073	4097											
BLID	414899	broad.mit.edu	37	chr11	121986441	121986441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccttttaagagaaagcaCtgtttccttaggcaacatag	8	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121986441	A	A	121986441	3	1	4	1	0	0	0	0	1	0	0	0	1449	565	20	3	140	3	BLID	11	121986441	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1888737	121986441	13020075	2074	4098											
UBASH3B	84959	broad.mit.edu	37	chr11	122653623	122653623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttattctactgctgtgaaGgagagaaacgtcttttgtct	9	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122653623	T	T	122653623	1	4	4	0	1	0	0	0	0	0	0	0	16966	1015	35	2		2	UBASH3B	11	122653623	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	667182	122653623	12352893	2075	4099											
GRAMD1B	57476	broad.mit.edu	37	chr11	123471265	123471265	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccttgaaaaggtaagtacGgccgagtttgcttttactgt	10	8	0	1	rs141277803	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123471265	C	C	123471265	1	2	4	0	1	0	0	0	0	0	0	0	6814	1131	39	4		4	GRAMD1B	11	123471265	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	817642	123471265	11535251	2076	4100											
ZNF202	7753	broad.mit.edu	37	chr11	123601052	123601052	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacacacacatccccctaatCcatggggctcatggtatatg	7	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123601052	G	G	123601052	1	3	4	0	1	0	0	0	0	0	0	0	17889	870	30	4		4	ZNF202	11	123601052	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	129787	123601052	11405464	2077	4101											
OR6X1	390260	broad.mit.edu	37	chr11	123625061	123625061	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaaaggaagaagtacattgGaatttgtagcctgggctcag	12	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123625061	C	C	123625061	3	2	4	1	0	0	0	0	1	0	0	0	11306	1174	41	4	774	4	OR6X1	11	123625061	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	24009	123625061	11381455	2078	4102											
OR10G4	390264	broad.mit.edu	37	chr11	123886909	123886909	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatagtggcctcaggctgcTttgtcctgatagtgctgtcc	13	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123886909	A	A	123886909	3	1	4	1	0	0	0	0	1	0	0	0	10995	1609	56	5	630	5	OR10G4	11	123886909	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	261848	123886909	11119607	2079	4103											
OR10G4	390264	broad.mit.edu	37	chr11	123886968	123886968	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatcctgcggatccgcacCtcagatgggaggcgcagagc	13	14	1	2	rs116021926	byFrequency;by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123886968	A	A	123886968	2	1	4	1	0	0	0	0	0	0	0	1	10995	668	24	2		2	OR10G4	11	123886968	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	59	123886968	11119548	2080	4104											
OR10G8	219869	broad.mit.edu	37	chr11	123901162	123901162	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccgttttctacactgtgcTgacgccccttctcaaccctg	8	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123901162	C	C	123901162	3	2	4	1	0	0	0	0	1	0	0	0	10997	1580	55	5	835	5	OR10G8	11	123901162	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	14194	123901162	11105354	2081	4105											
OR8G2	26492	broad.mit.edu	37	chr11	124095877	124095877	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttctggctcacagtgggAgtttacattttaggcatcct	10	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124095877	G	G	124095877	2	3	4	1	0	0	0	0	0	0	0	1	11329	291	11	5		5	OR8G2	11	124095877	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	194715	124095877	10910639	2082	4106											
OR8B12	219858	broad.mit.edu	37	chr11	124413356	124413356	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacagaaatctattaaagaGaggttaaaaaggaagaagta	9	2	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124413356	C	C	124413356	2	2	4	1	0	0	0	0	0	0	0	1	11320	929	33	4		4	OR8B12	11	124413356	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	317479	124413356	10593160	2083	4107											
PKNOX2	63876	broad.mit.edu	37	chr11	125298883	125298883	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcagcatatgcccagccctCactagtctccacctctcgtt	5	17	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298883	A	A	125298883	1	1	4	0	1	0	0	0	0	0	0	0	12078	841	29	3		3	PKNOX2	11	125298883	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	885527	125298883	9707633	2084	4108											
FEZ1	9638	broad.mit.edu	37	chr11	125325645	125325645	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgctcggtaaacgttgatGagtcccctgcagggttggta	13	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125325645	T	T	125325645	1	4	4	0	1	0	0	0	0	0	0	0	5880	1305	45	3		3	FEZ1	11	125325645	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	26762	125325645	9680871	2085	4109											
CDON	50937	broad.mit.edu	37	chr11	125873991	125873991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccaagagaaaacacaCcagaaaagaaaagcaggaga	10	9	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125873991	A	A	125873991	1	1	4	0	1	0	0	0	0	0	0	0	3200	522	18	3		3	CDON	11	125873991	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	548346	125873991	9132525	2086	4110											
KCNJ1	3758	broad.mit.edu	37	chr11	128708958	128708958	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaaattgttgactgcttcAtaatgcttctaggtactagg	8	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128708958	G	G	128708958	1	3	4	0	1	0	0	0	0	0	0	0	8113	232	8	5		5	KCNJ1	11	128708958	3'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	2834967	128708958	6297558	2087	4111											
KCNJ1	3758	broad.mit.edu	37	chr11	128709558	128709558	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcttcctgagattagccActcggattaggaggcaaagc	12	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128709558	G	G	128709558	3	3	4	1	0	0	0	0	1	0	0	0	8113	159	6	5	541	5	KCNJ1	11	128709558	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	600	128709558	6296958	2088	4112											
ARHGAP32	9743	broad.mit.edu	37	chr11	128839671	128839671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagaagtccagttttccCaggatctgatttactacgca	9	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128839671	A	A	128839671	3	1	4	1	0	0	0	0	1	0	0	0	883	594	21	2	872	2	ARHGAP32	11	128839671	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	130113	128839671	6166845	2089	4113											
NTM	50863	broad.mit.edu	37	chr11	132184660	132184660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaacgggagagctgggtGggagggcccctcaaggccag	19	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132184660	T	T	132184660	1	4	4	0	1	0	0	0	0	0	0	0	10794	1363	47	2		2	NTM	11	132184660	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3344989	132184660	2821856	2090	4114											
NTM	50863	broad.mit.edu	37	chr11	132204892	132204892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcaaccaccgggctttcCttccattttctcccagacca	6	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132204892	A	A	132204892	1	1	4	0	1	0	0	0	0	0	0	0	10794	696	24	2		2	NTM	11	132204892	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	20232	132204892	2801624	2091	4115											
SPATA19	219938	broad.mit.edu	37	chr11	133715240	133715240	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatatgaaaaattattccaTgtgactaccaccaagctgct	5	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133715240	C	C	133715240	1	2	4	0	1	0	0	0	0	0	0	0	15120	1479	51	5		5	SPATA19	11	133715240	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1510348	133715240	1291276	2092	4116											
JAM3	83700	broad.mit.edu	37	chr11	134014360	134014360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttagtgtcttggtttcttTccttctagaactgtatccct	7	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134014360	A	A	134014360	1	1	4	0	1	0	0	0	0	0	0	0	8014	1798	62	5		5	JAM3	11	134014360	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	299120	134014360	992156	2093	4117											
GLB1L3	112937	broad.mit.edu	37	chr11	134147856	134147856	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgttaccctacaagtgcatCctggccgggaacctgagcct	10	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134147856	T	T	134147856	1	4	4	0	1	0	0	0	0	0	0	0	6494	870	30	4		4	GLB1L3	11	134147856	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	133496	134147856	858660	2094	4118											
GLB1L3	112937	broad.mit.edu	37	chr11	134163121	134163121	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtaagacatttcagacaGgcagggttttacagctcctc	10	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134163121	A	A	134163121	1	1	4	0	1	0	0	0	0	0	0	0	6494	1015	35	4		4	GLB1L3	11	134163121	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	15265	134163121	843395	2095	4119											
IQSEC3	440073	broad.mit.edu	37	chr12	247571	247571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttctggagagccgcctgCcacggcggatctccctgcgc	13	17	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247571	A	A	247571	3	1	4	1	0	0	0	0	1	0	0	0	7889	739	26	3	1056	3	IQSEC3	12	247571	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08		247571	133604324	2096	4120											
SLC6A13	6540	broad.mit.edu	37	chr12	333247	333247	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcttcttgcggaacacgtGagggtacatgtccaccagcg	12	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	333247	T	T	333247	3	4	4	1	0	0	0	0	1	0	0	0	14790	1290	45	3	606	3	SLC6A13	12	333247	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	85676	333247	133518648	2097	4121											
WNK1	65125	broad.mit.edu	37	chr12	994341	994341	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaacagtttcagcaacttcAgcctctgcagggggcagtac	11	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	994341	C	C	994341	2	2	4	1	0	0	0	0	0	0	0	1	17504	175	7	5		5	WNK1	12	994341	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	661094	994341	132857554	2098	4122											
CACNA2D4	93589	broad.mit.edu	37	chr12	1949897	1949897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaacaccacaagggccGttcctacctgcagcaatggc	9	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1949897	T	T	1949897	1	4	4	0	1	0	0	0	0	0	0	0	2577	1160	40	3		3	CACNA2D4	12	1949897	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	955556	1949897	131901998	2099	4123											
CACNA2D4	93589	broad.mit.edu	37	chr12	1995215	1995215	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtcattgtactgcagttgCagtgagttgaggggaggtgg	17	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1995215	T	T	1995215	1	4	4	0	1	0	0	0	0	0	0	0	2577	725	25	4		4	CACNA2D4	12	1995215	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	45318	1995215	131856680	2100	4124											
TEAD4	7004	broad.mit.edu	37	chr12	3120265	3120265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagacgggtaggggtcccgGgggtggtaccccagcaccag	18	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3120265	T	T	3120265	1	4	4	0	1	0	0	0	0	0	0	0	15863	1247	43	2		2	TEAD4	12	3120265	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1125050	3120265	130731630	2101	4125											
KCNA1	3736	broad.mit.edu	37	chr12	5021978	5021978	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatcagaactgccaattgCaccactgctaaccaaaactg	5	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5021978	A	A	5021978	4	1	4	1	0	0	0	0	0	1	0	0	8071	718	25	3	1436	3	KCNA1	12	5021978	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1901713	5021978	128829917	2102	4126											
KCNA1	3736	broad.mit.edu	37	chr12	5022022	5022022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taataagagcaagctactgaCcgatgtttaaaaaacaaagg	8	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5022022	A	A	5022022	3	1	4	1	0	0	0	0	1	0	0	0	8071	507	18	3	1480	3	KCNA1	12	5022022	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	44	5022022	128829873	2103	4127											
KCNA5	3741	broad.mit.edu	37	chr12	5153695	5153695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtccacatcaacatctccGggctgcgctttgagacgcag	11	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5153695	T	T	5153695	3	4	4	1	0	0	0	0	1	0	0	0	8076	1116	39	1	384	1	KCNA5	12	5153695	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	131673	5153695	128698200	2104	4128											
ANO2	57101	broad.mit.edu	37	chr12	5724381	5724381	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggccacatagaagatGggggagtaggcattgacaaa	13	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5724381	T	T	5724381	2	4	4	1	0	0	0	0	0	0	0	1	697	1335	47	2		2	ANO2	12	5724381	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	570686	5724381	128127514	2105	4129											
VWF	7450	broad.mit.edu	37	chr12	6125812	6125812	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagcactgacacctgagtGagacgaggccctaaacggaa	12	11	0	3	rs61750602		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6125812	A	A	6125812	2	1	4	1	0	0	0	0	0	0	0	1	17373	1277	45	4		4	VWF	12	6125812	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	401431	6125812	127726083	2106	4130											
CHD4	1108	broad.mit.edu	37	chr12	6710533	6710533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaacctcagtggctgtcaCcatgctctccaccacagcta	7	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6710533	A	A	6710533	3	1	4	1	0	0	0	0	1	0	0	0	3358	507	18	3	5157	3	CHD4	12	6710533	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	584721	6710533	127141362	2107	4131											
ING4	51147	broad.mit.edu	37	chr12	6760616	6760616	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaaggagagaaagcccctCcagattccttaggaacatcc	10	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6760616	A	A	6760616	1	1	4	0	1	0	0	0	0	0	0	0	7808	870	30	3		3	ING4	12	6760616	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	50083	6760616	127091279	2108	4132											
LEPREL2	10536	broad.mit.edu	37	chr12	6948076	6948076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagctgatcctctctgtgCccctgtccccatcctgctct	8	17	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6948076	T	T	6948076	1	4	4	0	1	0	0	0	0	0	0	0	8803	754	26	4		4	LEPREL2	12	6948076	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	187460	6948076	126903819	2109	4133											
GNB3	2784	broad.mit.edu	37	chr12	6952808	6952808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccaggttatctctcctGctgccgcttcctggatgaca	9	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6952808	T	T	6952808	3	4	4	1	0	0	0	0	1	0	0	0	6583	1319	46	3	465	3	GNB3	12	6952808	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4732	6952808	126899087	2110	4134											
USP5	8078	broad.mit.edu	37	chr12	6969609	6969609	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaattctccaccaaccggcAgcaggatgcccaggagttct	10	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6969609	T	T	6969609	3	4	4	1	0	0	0	0	1	0	0	0	17208	188	7	5	1340	5	USP5	12	6969609	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	16801	6969609	126882286	2111	4135											
CLSTN3	9746	broad.mit.edu	37	chr12	7290632	7290632	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgcttgagagtgcccGcccagtcaagttcctctgga	11	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7290632	A	A	7290632	3	1	4	1	0	0	0	0	1	0	0	0	3595	1087	38	4	1322	4	CLSTN3	12	7290632	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	321023	7290632	126561263	2112	4136											
CD163	9332	broad.mit.edu	37	chr12	7649500	7649500	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatagcaggttcatgtccCtggcaagaaacgctgtcaag	11	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7649500	G	G	7649500	3	3	4	1	0	0	0	0	1	0	0	0	2997	680	24	4	2510	4	CD163	12	7649500	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	358868	7649500	126202395	2113	4137											
DPPA3	359787	broad.mit.edu	37	chr12	7867599	7867599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattacaggcgtgagccaccGcgctgggctaactttgcgat	13	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7867599	T	T	7867599	1	4	4	0	1	0	0	0	0	0	0	0	4775	1102	38	3		3	DPPA3	12	7867599	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	218099	7867599	125984296	2114	4138											
CLEC6A	93978	broad.mit.edu	37	chr12	8612117	8612117	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggggtcagaggtaagccaGcactgtacagatatagagcc	14	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8612117	A	A	8612117	1	1	4	0	1	0	0	0	0	0	0	0	3552	986	34	4		4	CLEC6A	12	8612117	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	744518	8612117	125239778	2115	4139											
CLEC4E	26253	broad.mit.edu	37	chr12	8687230	8687230	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatttgagttgtgccttctGttcttaaagagattttcctt	7	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8687230	T	T	8687230	1	4	4	0	1	0	0	0	0	0	0	0	3547	1392	48	3		3	CLEC4E	12	8687230	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	75113	8687230	125164665	2116	4140											
MFAP5	8076	broad.mit.edu	37	chr12	8804350	8804350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttactacttctgtaactgcCacactgcctcacttaggacc	6	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8804350	A	A	8804350	1	1	4	0	1	0	0	0	0	0	0	0	9611	609	21	2		2	MFAP5	12	8804350	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	117120	8804350	125047545	2117	4141											
A2ML1	144568	broad.mit.edu	37	chr12	8982314	8982314	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttgctaatgatgcctgttCctttccagtgtatttccgca	7	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8982314	A	A	8982314	1	1	4	0	1	0	0	0	0	0	0	0	5	870	30	3		3	A2ML1	12	8982314	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	177964	8982314	124869581	2118	4142											
A2ML1	144568	broad.mit.edu	37	chr12	8994177	8994177	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctagaaaggaaggcttccCtgaaggaaaacttcagaatt	9	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8994177	T	T	8994177	1	4	4	0	1	0	0	0	0	0	0	0	5	696	24	4		4	A2ML1	12	8994177	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	11863	8994177	124857718	2119	4143											
A2M	2	broad.mit.edu	37	chr12	9260366	9260366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctctgctctctgctgggCtcacacaatattgaagacaa	7	13	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9260366	A	A	9260366	1	1	4	0	1	0	0	0	0	0	0	0	4	812	28	3		3	A2M	12	9260366	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	266189	9260366	124591529	2120	4144											
CLEC1A	51267	broad.mit.edu	37	chr12	10226012	10226012	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgagacgcggcaaattccTgtgaaaagcacataagaaaa	9	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10226012	A	A	10226012	5	1	4	1	0	0	0	0	0	0	1	0	3537	1594	55	5	308	5	CLEC1A	12	10226012	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	965646	10226012	123625883	2121	4145											
CLEC1A	51267	broad.mit.edu	37	chr12	10226078	10226078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacatgtacagacatgcatGggccagccagcacttttctc	8	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10226078	T	T	10226078	1	4	4	0	1	0	0	0	0	0	0	0	3537	1363	47	2		2	CLEC1A	12	10226078	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	66	10226078	123625817	2122	4146											
OLR1	4973	broad.mit.edu	37	chr12	10321772	10321772	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagagtaaagaaactgaaGacctagagtgacagaggata	13	4	0	7			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10321772	T	T	10321772	3	4	4	1	0	0	0	0	1	0	0	0	10957	942	33	3	762	3	OLR1	12	10321772	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	95694	10321772	123530123	2123	4147											
C12orf59	120939	broad.mit.edu	37	chr12	10342590	10342590	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccctcctctttggacaccCtcccagggtatgaagaagct	9	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10342590	T	T	10342590	3	4	4	1	0	0	0	0	1	0	0	0	1715	681	24	4	357	4	C12orf59	12	10342590	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	20818	10342590	123509305	2124	4148											
KLRK1	22914	broad.mit.edu	37	chr12	10541490	10541490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcctgaataaaataaaaCtgggcatttgttttttgttc	7	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10541490	A	A	10541490	1	1	4	0	1	0	0	0	0	0	0	0	8494	580	20	3		3	KLRK1	12	10541490	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	198900	10541490	123310405	2125	4149											
STYK1	55359	broad.mit.edu	37	chr12	10786572	10786572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagcccctgcccagcccCaaagtttgagctttaccttg	7	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10786572	A	A	10786572	1	1	4	0	1	0	0	0	0	0	0	0	15477	609	21	2		2	STYK1	12	10786572	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	245082	10786572	123065323	2126	4150											
GSG1	83445	broad.mit.edu	37	chr12	13243462	13243462	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttccacagtttcctcacaGgatagccacatgccactccg	6	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13243462	A	A	13243462	2	1	4	1	0	0	0	0	0	0	0	1	6886	987	35	4		4	GSG1	12	13243462	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	2456890	13243462	120608433	2127	4151											
GRIN2B	2904	broad.mit.edu	37	chr12	13719974	13719974	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttactctgctgatggagaaGaccatgccaggcttgccaga	11	11	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13719974	T	T	13719974	2	4	4	1	0	0	0	0	0	0	0	1	6846	929	33	3		3	GRIN2B	12	13719974	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	476512	13719974	120131921	2128	4152											
GRIN2B	2904	broad.mit.edu	37	chr12	14018915	14018915	+	Frame_Shift_Del	DEL	G	-	-													gtgatgatgctctttgggtcGgtctcattcatggctaccag					rs77299791	byFrequency;by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14018915	-	-	14018915	7	5	4	1	0	1	0	1	0	0	0	0	6846	1103	39	0	4274	0	GRIN2B	12	14018915	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	298941	14018915	119832980	2129	4153											
GUCY2C	2984	broad.mit.edu	37	chr12	14778850	14778850	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttttggtcatgaaaaagtCtgtaggtagtaatagataaa	9	2	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14778850	T	T	14778850	5	4	4	1	0	0	0	0	0	0	1	0	6961	927	32	4	1000	4	GUCY2C	12	14778850	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	759935	14778850	119073045	2130	4154											
DERA	51071	broad.mit.edu	37	chr12	16189280	16189280	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagaactctttcgaataGgtgccagtactctgctctcg	9	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16189280	A	A	16189280	3	1	4	1	0	0	0	0	1	0	0	0	4485	1000	35	4	895	4	DERA	12	16189280	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1410430	16189280	117662615	2131	4155											
CAPZA3	93661	broad.mit.edu	37	chr12	18891977	18891977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagaaaaattctacgaaggGatcttccagtgacccgcact	9	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18891977	T	T	18891977	3	4	4	1	0	0	0	0	1	0	0	0	2668	1174	41	3	777	3	CAPZA3	12	18891977	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2702697	18891977	114959918	2132	4156											
PDE3A	5139	broad.mit.edu	37	chr12	20766631	20766631	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagacaagcttgctattccAaaggtaggtagtaatgacat	9	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20766631	T	T	20766631	2	4	4	1	0	0	0	0	0	0	0	1	11731	117	5	5		5	PDE3A	12	20766631	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	1874654	20766631	113085264	2133	4157											
SLCO1B1	10599	broad.mit.edu	37	chr12	21391984	21391984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatattatattaatttatgCcatgaagaaaaaatatcaag	4	3	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21391984	A	A	21391984	3	1	4	1	0	0	0	0	1	0	0	0	14837	739	26	3	1991	3	SLCO1B1	12	21391984	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	625353	21391984	112459911	2134	4158											
ABCC9	10060	broad.mit.edu	37	chr12	22004998	22004998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctaactcttctgaattgGgctctgaactcttctgaact	6	10	6	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22004998	T	T	22004998	1	4	4	0	1	0	0	0	0	0	0	0	59	1247	43	2		2	ABCC9	12	22004998	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	613014	22004998	111846897	2135	4159											
KIAA0528	9847	broad.mit.edu	37	chr12	22624354	22624354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattaattcatcttcaggCagagatactgtaaaatttac	6	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22624354	A	A	22624354	2	1	4	1	0	0	0	0	0	0	0	1	8252	697	25	3		3	KIAA0528	12	22624354	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	619356	22624354	111227541	2136	4160											
ETNK1	55500	broad.mit.edu	37	chr12	22837317	22837317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaacagcaagaaagtgtGgtgcatggagttgatttaga	13	3	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22837317	T	T	22837317	1	4	4	0	1	0	0	0	0	0	0	0	5315	1363	47	2		2	ETNK1	12	22837317	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	212963	22837317	111014578	2137	4161											
CASC1	55259	broad.mit.edu	37	chr12	25347895	25347895	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggtatgagttatttccCaaaccgacccgcttcgctgt	8	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25347895	G	G	25347895	1	3	4	0	1	0	0	0	0	0	0	0	2686	593	21	4		4	CASC1	12	25347895	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2510578	25347895	108504000	2138	4162											
IFLTD1	160492	broad.mit.edu	37	chr12	25699239	25699239	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atataactacagattagaacTttgttttctgctgatttatt	5	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25699239	A	A	25699239	1	1	4	0	1	0	0	0	0	0	0	0	7600	1624	56	5		5	IFLTD1	12	25699239	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	351344	25699239	108152656	2139	4163											
ITPR2	3709	broad.mit.edu	37	chr12	26835587	26835587	+	Frame_Shift_Del	DEL	T	-	-													tgtgttggtgcataaatgccTtaaccgaacatatgagttcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26835587	-	-	26835587	7	5	4	1	0	1	0	1	0	0	0	0	7991	1608	56	0	7121	0	ITPR2	12	26835587	Frame_Shift_Del	DEL	T	TCGA-05-4382-01A-01D-1265-08	1136348	26835587	107016308	2140	4164											
C12orf71	728858	broad.mit.edu	37	chr12	27234183	27234183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagtcttttcgttggtGctgaccgatggggacttttg	14	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27234183	T	T	27234183	3	4	4	1	0	0	0	0	1	0	0	0	1725	1319	46	3	79	3	C12orf71	12	27234183	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	398596	27234183	106617712	2141	4165											
PPFIBP1	8496	broad.mit.edu	37	chr12	27745621	27745621	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcatccttctccggctgctCtgacaggattgagatctctg	10	12	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27745621	A	A	27745621	1	1	4	0	1	0	0	0	0	0	0	0	12409	928	32	3		3	PPFIBP1	12	27745621	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	511438	27745621	106106274	2142	4166											
MRPS35	60488	broad.mit.edu	37	chr12	27876883	27876883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttctttcatgtaacttGgtgatgctctcagtaatttg	8	7	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27876883	T	T	27876883	1	4	4	0	1	0	0	0	0	0	0	0	9938	1363	47	2		2	MRPS35	12	27876883	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	131262	27876883	105975012	2143	4167											
CCDC91	55297	broad.mit.edu	37	chr12	28605394	28605394	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctttcaaatttgttctggtCtttatttattttgaagcttg	6	5	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28605394	G	G	28605394	1	3	4	0	1	0	0	0	0	0	0	0	2898	928	32	4		4	CCDC91	12	28605394	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	728511	28605394	105246501	2144	4168											
FAR2	55711	broad.mit.edu	37	chr12	29460819	29460819	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttccaaactaaggttcttCtagtccaattactttctgat	5	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29460819	A	A	29460819	1	1	4	0	1	0	0	0	0	0	0	0	5732	928	32	3		3	FAR2	12	29460819	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	855425	29460819	104391076	2145	4169											
OVCH1	341350	broad.mit.edu	37	chr12	29617680	29617680	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacaacgtaagaaagtcaaAgaatccagcaacttccttgt	6	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29617680	T	T	29617680	1	4	4	0	1	0	0	0	0	0	0	0	11417	87	3	5		5	OVCH1	12	29617680	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	156861	29617680	104234215	2146	4170											
OVCH1	341350	broad.mit.edu	37	chr12	29624839	29624839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacctgccatggccaacaGtgggggcaggcttcttcccc	11	17	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29624839	T	T	29624839	3	4	4	1	0	0	0	0	1	0	0	0	11417	1020	36	3	1704	3	OVCH1	12	29624839	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7159	29624839	104227056	2147	4171											
OVCH1	341350	broad.mit.edu	37	chr12	29629149	29629149	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctacctacctaacttgtgCttttcttcagaatcaccgta	5	12	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29629149	G	G	29629149	3	3	4	1	0	0	0	0	1	0	0	0	11417	796	28	4	2007	4	OVCH1	12	29629149	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4310	29629149	104222746	2148	4172											
OVCH1	341350	broad.mit.edu	37	chr12	29640733	29640733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggaactgaacctccagcaCaaccagctacccaggaagtt	9	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29640733	A	A	29640733	3	1	4	1	0	0	0	0	1	0	0	0	11417	478	17	3	2707	3	OVCH1	12	29640733	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	11584	29640733	104211162	2149	4173											
OVCH1	341350	broad.mit.edu	37	chr12	29648356	29648356	+	Frame_Shift_Del	DEL	C	-	-													cttctgaaagaggctgtactCcccagaagtcacagttatat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29648356	-	-	29648356	7	5	4	1	0	1	0	1	0	0	0	0	11417	864	30	0	3188	0	OVCH1	12	29648356	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	7623	29648356	104203539	2150	4174											
DENND5B	160518	broad.mit.edu	37	chr12	31566471	31566471	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgagctcgtccaacatcagtCttgatctcactcatgttttg	7	12	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31566471	T	T	31566471	2	4	4	1	0	0	0	0	0	0	0	1	4477	912	32	4		4	DENND5B	12	31566471	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1918115	31566471	102285424	2151	4175											
PKP2	5318	broad.mit.edu	37	chr12	33030954	33030954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctgatgccaggaggacCtggaagccctgttctgagtg	14	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33030954	A	A	33030954	3	1	4	1	0	0	0	0	1	0	0	0	12080	681	24	2	1833	2	PKP2	12	33030954	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1464483	33030954	100820941	2152	4176											
CPNE8	144402	broad.mit.edu	37	chr12	39161627	39161627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagacttgacaagaaaaCatatttgctattttaatgca	5	6	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39161627	A	A	39161627	1	1	4	0	1	0	0	0	0	0	0	0	3850	493	17	3		3	CPNE8	12	39161627	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	6130673	39161627	94690268	2153	4177											
KIF21A	55605	broad.mit.edu	37	chr12	39751055	39751055	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accctacccacatacctgctCtggcaagaacatggttggcc	8	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39751055	A	A	39751055	3	1	4	1	0	0	0	0	1	0	0	0	8358	913	32	3	3744	3	KIF21A	12	39751055	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	589428	39751055	94100840	2154	4178											
C12orf40	283461	broad.mit.edu	37	chr12	40110668	40110668	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcttgtttcacttattaaTacatgctatattaataatta	3	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40110668	A	A	40110668	1	1	4	0	1	0	0	0	0	0	0	0	1699	1421	49	5		5	C12orf40	12	40110668	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	359613	40110668	93741227	2155	4179											
LRRK2	120892	broad.mit.edu	37	chr12	40693140	40693140	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatggaccctttagttgtGgatttaaaagtggcatttca	9	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40693140	A	A	40693140	1	1	4	0	1	0	0	0	0	0	0	0	9120	1363	47	4		4	LRRK2	12	40693140	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	582472	40693140	93158755	2156	4180											
CNTN1	1272	broad.mit.edu	37	chr12	41316138	41316138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccttgttatcaacaaccCtgacaaacagaaagatgctg	6	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41316138	A	A	41316138	3	1	4	1	0	0	0	0	1	0	0	0	3672	681	24	2	322	2	CNTN1	12	41316138	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	622998	41316138	92535757	2157	4181											
CNTN1	1272	broad.mit.edu	37	chr12	41337686	41337686	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggaatttggaagtgaaaAcatcttattattttgcacaa	7	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41337686	G	G	41337686	1	3	4	0	1	0	0	0	0	0	0	0	3672	58	2	5		5	CNTN1	12	41337686	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	21548	41337686	92514209	2158	4182											
PDZRN4	29951	broad.mit.edu	37	chr12	41957328	41957328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaaatggaaactaatgtGccactctcatttgttttcta	8	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41957328	T	T	41957328	1	4	4	0	1	0	0	0	0	0	0	0	11804	1334	46	3		3	PDZRN4	12	41957328	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	619642	41957328	91894567	2159	4183											
PRICKLE1	144165	broad.mit.edu	37	chr12	42860072	42860072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagaaggggcggccgtcCttcatgatatacctctgtcc	11	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42860072	A	A	42860072	3	1	4	1	0	0	0	0	1	0	0	0	12592	680	24	2	1808	2	PRICKLE1	12	42860072	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	902744	42860072	90991823	2160	4184											
ADAMTS20	80070	broad.mit.edu	37	chr12	43833653	43833653	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcacttaaccagtagtttaCtaatataattaaatccaagt	4	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43833653	G	G	43833653	1	3	4	0	1	0	0	0	0	0	0	0	266	580	20	4		4	ADAMTS20	12	43833653	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	973581	43833653	90018242	2161	4185											
ADAMTS20	80070	broad.mit.edu	37	chr12	43945608	43945608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcgcccccacttagccgCtgaaggcgtctcgcggtgac	12	18	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43945608	A	A	43945608	1	1	4	0	1	0	0	0	0	0	0	0	266	812	28	3		3	ADAMTS20	12	43945608	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	111955	43945608	89906287	2162	4186											
ANO6	196527	broad.mit.edu	37	chr12	45771878	45771878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaccctggtctttgcaGtatttatgggagtatggggt	14	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45771878	T	T	45771878	3	4	4	1	0	0	0	0	1	0	0	0	701	1029	36	3	1205	3	ANO6	12	45771878	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1826270	45771878	88080017	2163	4187											
ANO6	196527	broad.mit.edu	37	chr12	45771893	45771893	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagtatttatgggagtaTggggtaagtttttttttttt	11	1	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45771893	A	A	45771893	3	1	4	1	0	0	0	0	1	0	0	0	701	1464	51	5	1220	5	ANO6	12	45771893	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	15	45771893	88080002	2164	4188											
ARID2	196528	broad.mit.edu	37	chr12	46285546	46285546	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacatccaagtgtctactActtttattttttataggtgg	6	6	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46285546	G	G	46285546	1	3	4	0	1	0	0	0	0	0	0	0	917	406	14	5		5	ARID2	12	46285546	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	513653	46285546	87566349	2165	4189											
ARID2	196528	broad.mit.edu	37	chr12	46289928	46289928	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgcagtttcctgttttcatCgtatagacagggcagctctg	10	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46289928	T	T	46289928	1	4	4	0	1	0	0	0	0	0	0	0	917	899	31	4		4	ARID2	12	46289928	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4382	46289928	87561967	2166	4190											
FAM113B	91523	broad.mit.edu	37	chr12	47529467	47529467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaatgctatgaagtccGggcagcaggaattcttgaag	13	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47529467	T	T	47529467	1	4	4	0	1	0	0	0	0	0	0	0	5448	1131	39	1		1	FAM113B	12	47529467	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1239539	47529467	86322428	2167	4191											
RAPGEF3	10411	broad.mit.edu	37	chr12	48134466	48134466	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgagcagctgggcccgGgggccgggcacggggcagag	20	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48134466	C	C	48134466	2	2	4	1	0	0	0	0	0	0	0	1	13153	1219	43	4		4	RAPGEF3	12	48134466	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	604999	48134466	85717429	2168	4192											
HDAC7	51564	broad.mit.edu	37	chr12	48188756	48188756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagaagccatggtggagCgaggggcatggggtgggagg	23	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48188756	A	A	48188756	1	1	4	0	1	0	0	0	0	0	0	0	7079	783	27	3		3	HDAC7	12	48188756	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	54290	48188756	85663139	2169	4193											
COL2A1	1280	broad.mit.edu	37	chr12	48379225	48379225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaattcacagtacttcaGgcctccctaacccaaactcc	3	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48379225	T	T	48379225	1	4	4	0	1	0	0	0	0	0	0	0	3719	1015	35	2		2	COL2A1	12	48379225	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	190469	48379225	85472670	2170	4194											
SENP1	29843	broad.mit.edu	37	chr12	48440265	48440265	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacaacaaaaaaaatgacatCtttccaagcttctttccttc	2	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48440265	G	G	48440265	1	3	4	0	1	0	0	0	0	0	0	0	14159	928	32	4		4	SENP1	12	48440265	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	61040	48440265	85411630	2171	4195											
CCNT1	904	broad.mit.edu	37	chr12	49110580	49110580	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttccgctaagcgtcgacCgccgggttgttacttgcctc	10	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49110580	A	A	49110580	1	1	4	0	1	0	0	0	0	0	0	0	2964	667	23	1		1	CCNT1	12	49110580	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	670315	49110580	84741315	2172	4196											
DDX23	9416	broad.mit.edu	37	chr12	49239371	49239371	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttacctttctgcagatttGgaacgggaacgagagcgaga	12	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49239371	A	A	49239371	2	1	4	1	0	0	0	0	0	0	0	1	4383	1335	47	4		4	DDX23	12	49239371	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	128791	49239371	84612524	2173	4197											
LMBR1L	55716	broad.mit.edu	37	chr12	49491726	49491726	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccctcactccctctcaCcaaaggcccggatcagctct	6	19	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49491726	A	A	49491726	5	1	4	1	0	0	0	0	0	0	1	0	8915	521	18	3	74	3	LMBR1L	12	49491726	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	252355	49491726	84360169	2174	4198											
LMBR1L	55716	broad.mit.edu	37	chr12	49504188	49504188	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcatggtttgacggcactCtgagaccaggtgggctcgga	16	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49504188	A	A	49504188	1	1	4	0	1	0	0	0	0	0	0	0	8915	928	32	3		3	LMBR1L	12	49504188	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	12462	49504188	84347707	2175	4199											
TUBA1B	10376	broad.mit.edu	37	chr12	49521755	49521755	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggataattagtattcctctcCttcttcctcaccctctcctt	3	15	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49521755	A	A	49521755	4	1	4	1	0	0	0	0	0	1	0	0	16870	690	24	2	17	2	TUBA1B	12	49521755	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	17567	49521755	84330140	2176	4200											
KCNH3	23416	broad.mit.edu	37	chr12	49944157	49944157	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgggggcacgtgtgtgtgaGaccatggccctgatctgtgg	18	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49944157	A	A	49944157	1	1	4	0	1	0	0	0	0	0	0	0	8103	957	33	4		4	KCNH3	12	49944157	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	422402	49944157	83907738	2177	4201											
KCNH3	23416	broad.mit.edu	37	chr12	49951180	49951180	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagatgcgggaaggacTgcagtcacttcgccaggctg	15	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49951180	G	G	49951180	3	3	4	1	0	0	0	0	1	0	0	0	8103	1580	55	5	2754	5	KCNH3	12	49951180	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	7023	49951180	83900715	2178	4202											
KCNH3	23416	broad.mit.edu	37	chr12	49951281	49951281	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcccagccagcacctccGggcttctgcagcctctgtgt	11	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49951281	A	A	49951281	3	1	4	1	0	0	0	0	1	0	0	0	8103	1116	39	4	2855	4	KCNH3	12	49951281	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	101	49951281	83900614	2179	4203											
AQP2	359	broad.mit.edu	37	chr12	50344476	50344477	+	5'Flank	DNP	GG	TT	TT													cccgccacgtgcccagatccGggatggaaggaccctataaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50344477	TT	TT	50344476	1	4	4	0	1	0	0	0	0	0	0	0	828	1131	39	1		1	AQP2	12	50344476	5'Flank	DNP	GG	TCGA-05-4382-01A-01D-1265-08	393195	50344476	83507419	2180	4204											
LASS5	91012	broad.mit.edu	37	chr12	50529760	50529760	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagacatcatgtagacacatGatcagagttcccactcgaac	8	11	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50529760	A	A	50529760	2	1	4	1	0	0	0	0	0	0	0	1	8714	1280	45	4		4	LASS5	12	50529760	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	185284	50529760	83322135	2181	4205											
LARP4	113251	broad.mit.edu	37	chr12	50824402	50824402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattagtagatgtaaaatacGtgtgaaatagagcgcaagga	11	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50824402	T	T	50824402	1	4	4	0	1	0	0	0	0	0	0	0	8702	1160	40	3		3	LARP4	12	50824402	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	294642	50824402	83027493	2182	4206											
SLC11A2	4891	broad.mit.edu	37	chr12	51385987	51385987	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcacctgtaagctctgtaGaacattcagaaagtcattca	6	11	5	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51385987	A	A	51385987	2	1	4	1	0	0	0	0	0	0	0	1	14494	933	33	4		4	SLC11A2	12	51385987	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	561585	51385987	82465908	2183	4207											
SLC11A2	4891	broad.mit.edu	37	chr12	51390650	51390650	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggcatgatgacagctcCcacgatgcccacagcctgtt	11	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51390650	A	A	51390650	4	1	4	1	0	0	0	0	0	1	0	0	14494	632	22	2	1018	2	SLC11A2	12	51390650	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4663	51390650	82461245	2184	4208											
TFCP2	7024	broad.mit.edu	37	chr12	51502724	51502725	+	Intron	DNP	CG	AA	AA													tccaagttcctattatcctaCgaccatgtaaatttctttac					rs116962528	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	51502725	AA	AA	51502724	1	1	4	0	1	0	0	0	0	0	0	0	15918	551	19	3		3	TFCP2	12	51502724	Intron	DNP	CG	TCGA-05-4382-01A-01D-1265-08	112074	51502724	82349171	2185	4209											
BIN2	51411	broad.mit.edu	37	chr12	51696465	51696465	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttgtaaaactcaagccactCttacccatacgatggccttc	6	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51696465	G	G	51696465	1	3	4	0	1	0	0	0	0	0	0	0	1439	928	32	4		4	BIN2	12	51696465	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	193741	51696465	82155430	2186	4210											
GALNT6	11226	broad.mit.edu	37	chr12	51752153	51752153	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagtgcagtggtgcaatctCggctcactgcaaccttcccc	11	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51752153	G	G	51752153	1	3	4	0	1	0	0	0	0	0	0	0	6279	899	31	4		4	GALNT6	12	51752153	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	55688	51752153	82099742	2187	4211											
SCN8A	6334	broad.mit.edu	37	chr12	52139889	52139889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcatggtaaatataatccCtgtcccttggtctgagtttt	9	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52139889	A	A	52139889	1	1	4	0	1	0	0	0	0	0	0	0	14037	696	24	2		2	SCN8A	12	52139889	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	387736	52139889	81712006	2188	4212											
SCN8A	6334	broad.mit.edu	37	chr12	52168053	52168053	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaaagtcttcacctatatCttcatcctggagatgttgct	7	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52168053	G	G	52168053	3	3	4	1	0	0	0	0	1	0	0	0	14037	903	32	4	3800	4	SCN8A	12	52168053	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	28164	52168053	81683842	2189	4213											
KRT86	3892	broad.mit.edu	37	chr12	52647092	52647092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcgcagggtctccccgtGcctgatcaccgtggccttca	13	16	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52647092	T	T	52647092	1	4	4	0	1	0	0	0	0	0	0	0	8571	1334	46	3		3	KRT86	12	52647092	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	479039	52647092	81204803	2190	4214											
KRT75	9119	broad.mit.edu	37	chr12	52825467	52825467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgagtctgcagccccaaGtatctagtccaaaagaagct	8	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825467	T	T	52825467	1	4	4	0	1	0	0	0	0	0	0	0	8559	1044	36	3		3	KRT75	12	52825467	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	178375	52825467	81026428	2191	4215											
KRT6B	3854	broad.mit.edu	37	chr12	52845379	52845379	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgatctgctcacgctcctCggcccgcacccgctggatgg	11	17	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52845379	A	A	52845379	4	1	4	1	0	0	0	0	0	1	0	0	8552	893	31	3	1246	3	KRT6B	12	52845379	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	19912	52845379	81006516	2192	4216											
KRT5	3852	broad.mit.edu	37	chr12	52911461	52911461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcagcgatgatgctatcCaggtccaggttgcggttgtt	12	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52911461	A	A	52911461	2	1	4	1	0	0	0	0	0	0	0	1	8550	581	21	2		2	KRT5	12	52911461	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	66082	52911461	80940434	2193	4217											
KRT71	112802	broad.mit.edu	37	chr12	52943891	52943891	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtccccagacagcgtcTccagctgcttccgcaggttg	10	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52943891	C	C	52943891	3	2	4	1	0	0	0	0	1	0	0	0	8555	1551	54	5	1025	5	KRT71	12	52943891	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	32430	52943891	80908004	2194	4218											
KRT74	121391	broad.mit.edu	37	chr12	52965275	52965275	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtcattgggggatgcaacCctcatcccacagctgccctg	11	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52965275	T	T	52965275	1	4	4	0	1	0	0	0	0	0	0	0	8558	638	22	4		4	KRT74	12	52965275	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	21384	52965275	80886620	2195	4219											
KRT72	140807	broad.mit.edu	37	chr12	52992867	52992867	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttccacttggtctctagCacctgattctgctgctccag	9	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52992867	A	A	52992867	2	1	4	1	0	0	0	0	0	0	0	1	8556	697	25	3		3	KRT72	12	52992867	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	27592	52992867	80859028	2196	4220											
KRT73	319101	broad.mit.edu	37	chr12	53004692	53004692	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctctcccatgctctcaatGgttgagccctcctctgtcct	6	17	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53004692	A	A	53004692	1	1	4	0	1	0	0	0	0	0	0	0	8557	1363	47	4		4	KRT73	12	53004692	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	11825	53004692	80847203	2197	4221											
KRT2	3849	broad.mit.edu	37	chr12	53039430	53039430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttttaccacttccaccCgcaaatgtgcagtttagcct	7	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53039430	A	A	53039430	1	1	4	0	1	0	0	0	0	0	0	0	8528	667	23	1		1	KRT2	12	53039430	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	34738	53039430	80812465	2198	4222											
KRT3	3850	broad.mit.edu	37	chr12	53184900	53184900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctctctttatacagcaGggctccatccccagttactt	7	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53184900	T	T	53184900	1	4	4	0	1	0	0	0	0	0	0	0	8537	1015	35	2		2	KRT3	12	53184900	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	145470	53184900	80666995	2199	4223											
KRT4	3851	broad.mit.edu	37	chr12	53201415	53201415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctcatgttcacaccctgCctaacccctcacctgtactc	4	20	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53201415	A	A	53201415	1	1	4	0	1	0	0	0	0	0	0	0	8548	754	26	3		3	KRT4	12	53201415	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	16515	53201415	80650480	2200	4224											
TENC1	23371	broad.mit.edu	37	chr12	53449057	53449057	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccaaccattaaaccaaGccaccccaaccccagaagcc	4	20	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53449057	T	T	53449057	1	4	4	0	1	0	0	0	0	0	0	0	15880	986	34	3		3	TENC1	12	53449057	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	247642	53449057	80402838	2201	4225											
AMHR2	269	broad.mit.edu	37	chr12	53818000	53818000	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaacatgttttgtctattCttttggccagttttttgcct	8	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53818000	G	G	53818000	1	3	4	0	1	0	0	0	0	0	0	0	573	928	32	4		4	AMHR2	12	53818000	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	368943	53818000	80033895	2202	4226											
HOXC12	3228	broad.mit.edu	37	chr12	54350313	54350313	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccggagaatgaaaaagaaaaGacttctgttgagggagcaag	13	5	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54350313	C	C	54350313	3	2	4	1	0	0	0	0	1	0	0	0	7378	942	33	4	818	4	HOXC12	12	54350313	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	532313	54350313	79501582	2203	4227											
HOXC4	3221	broad.mit.edu	37	chr12	54422766	54422766	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actggctttatgaccggcttCcctagaagaacgggcggaga	13	10	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54422766	A	A	54422766	1	1	4	0	1	0	0	0	0	0	0	0	7380	870	30	3		3	HOXC4	12	54422766	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	72453	54422766	79429129	2204	4228											
PDE1B	5153	broad.mit.edu	37	chr12	54963069	54963070	+	Missense_Mutation	DNP	GG	TT	TT													caccttcacccagcaggcccGggccaaaggccgccgagcag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54963070	TT	TT	54963069	3	4	4	1	0	0	0	0	1	0	0	0	11728	1116	39	1	396	1	PDE1B	12	54963069	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	540303	54963069	78888826	2205	4229											
LACRT	90070	broad.mit.edu	37	chr12	55025397	55025397	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtcttcaacagcaggggcTgtggcaattccaagtctcat	12	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55025397	A	A	55025397	1	1	4	0	1	0	0	0	0	0	0	0	8668	1595	55	5		5	LACRT	12	55025397	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	62328	55025397	78826498	2206	4230											
ITGA7	3679	broad.mit.edu	37	chr12	56088218	56088218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcacccttccggccccgcCtggcttacgtggccaacagc	9	20	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56088218	A	A	56088218	1	1	4	0	1	0	0	0	0	0	0	0	7951	696	24	2		2	ITGA7	12	56088218	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1062821	56088218	77763677	2207	4231											
ITGA7	3679	broad.mit.edu	37	chr12	56097047	56097047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagctgcccaggcccaacCcctcagtactaaagagagtg	10	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56097047	A	A	56097047	1	1	4	0	1	0	0	0	0	0	0	0	7951	638	22	2		2	ITGA7	12	56097047	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	8829	56097047	77754848	2208	4232											
PAN2	9924	broad.mit.edu	37	chr12	56711296	56711296	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgagcacgtccagtactgGaagtggacaaggtatagcca	12	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56711296	C	C	56711296	1	2	4	0	1	0	0	0	0	0	0	0	11508	1189	41	4		4	PAN2	12	56711296	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	614249	56711296	77140599	2209	4233											
NACA	4666	broad.mit.edu	37	chr12	57106635	57106635	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgcctttgctctcgacaCatttgcttgtgacatgacca	8	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57106635	G	G	57106635	3	3	4	1	0	0	0	0	1	0	0	0	10227	478	17	4	87	4	NACA	12	57106635	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	395339	57106635	76745260	2210	4234											
SDR9C7	121214	broad.mit.edu	37	chr12	57317743	57317743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttgtagcggatgcgaggGctccgggaaacaatagcatg	17	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57317743	T	T	57317743	3	4	4	1	0	0	0	0	1	0	0	0	14087	1194	42	3	129	3	SDR9C7	12	57317743	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	211108	57317743	76534152	2211	4235											
MYO1A	4640	broad.mit.edu	37	chr12	57430240	57430240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgtactatttttcaacCacgcaaagacctgagtaaga	8	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57430240	A	A	57430240	1	1	4	0	1	0	0	0	0	0	0	0	10162	609	21	2		2	MYO1A	12	57430240	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	112497	57430240	76421655	2212	4236											
MYO1A	4640	broad.mit.edu	37	chr12	57431662	57431662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtcttaccggtctcccCcattccagtgaggccaggtg	13	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57431662	A	A	57431662	3	1	4	1	0	0	0	0	1	0	0	0	10162	623	22	2	1223	2	MYO1A	12	57431662	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1422	57431662	76420233	2213	4237											
STAT6	6778	broad.mit.edu	37	chr12	57496082	57496082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaatgaccttgttgaaCtgcgaccaggacacagaacg	12	9	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57496082	A	A	57496082	3	1	4	1	0	0	0	0	1	0	0	0	15388	564	20	3	1080	3	STAT6	12	57496082	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	64420	57496082	76355813	2214	4238											
LRP1	4035	broad.mit.edu	37	chr12	57559898	57559898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccctcggaccgattcaaGtgcgagaacaaccggtgcat	11	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57559898	T	T	57559898	3	4	4	1	0	0	0	0	1	0	0	0	9038	1020	36	3	2769	3	LRP1	12	57559898	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	63816	57559898	76291997	2215	4239											
LRP1	4035	broad.mit.edu	37	chr12	57571101	57571101	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcctggccagggacacCttactcctcagtgccatctg	9	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57571101	T	T	57571101	1	4	4	0	1	0	0	0	0	0	0	0	9038	696	24	4		4	LRP1	12	57571101	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	11203	57571101	76280794	2216	4240											
GLI1	2735	broad.mit.edu	37	chr12	57861912	57861912	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtggggatggccccctgcctCgggcaccatccatttctaca	11	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57861912	G	G	57861912	3	3	4	1	0	0	0	0	1	0	0	0	6501	875	31	4	1247	4	GLI1	12	57861912	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	290811	57861912	75989983	2217	4241											
MARS	4141	broad.mit.edu	37	chr12	57881835	57881835	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgaactcagaagcgggaGgccggttccggttgcatcag	15	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57881835	T	T	57881835	1	4	4	0	1	0	0	0	0	0	0	0	9408	1015	35	2		2	MARS	12	57881835	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	19923	57881835	75970060	2218	4242											
KIF5A	3798	broad.mit.edu	37	chr12	57965898	57965898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcgggagctgagccacCtgcaatcagagaacgatgcc	12	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57965898	A	A	57965898	3	1	4	1	0	0	0	0	1	0	0	0	8375	680	24	2	1471	2	KIF5A	12	57965898	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	84063	57965898	75885997	2219	4243											
KIF5A	3798	broad.mit.edu	37	chr12	57969239	57969239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtaaaggctcagggcggGtactgccccctgagccatgg	14	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57969239	T	T	57969239	1	4	4	0	1	0	0	0	0	0	0	0	8375	1276	44	3		3	KIF5A	12	57969239	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3341	57969239	75882656	2220	4244											
PIP4K2C	79837	broad.mit.edu	37	chr12	57987870	57987870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgactttaaggccagCtccaagatcaaggtcaacaa	8	11	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57987870	A	A	57987870	3	1	4	1	0	0	0	0	1	0	0	0	12033	796	28	3	243	3	PIP4K2C	12	57987870	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	18631	57987870	75864025	2221	4245											
PIP4K2C	79837	broad.mit.edu	37	chr12	57994485	57994485	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgcaacctcaatttttAtacttcctttccccagaagg	5	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57994485	C	C	57994485	1	2	4	0	1	0	0	0	0	0	0	0	12033	464	16	5		5	PIP4K2C	12	57994485	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	6615	57994485	75857410	2222	4246											
DTX3	196403	broad.mit.edu	37	chr12	58000747	58000747	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgagcaaagagacccCagcccggctggcccggcttc	11	17	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58000747	T	T	58000747	3	4	4	1	0	0	0	0	1	0	0	0	4835	594	21	4	107	4	DTX3	12	58000747	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	6262	58000747	75851148	2223	4247											
AVPR1A	552	broad.mit.edu	37	chr12	63543865	63543865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctctggcgcgacgccGtcttcccgcggacgttgcac	12	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63543865	T	T	63543865	3	4	4	1	0	0	0	0	1	0	0	0	1236	1145	40	3	512	3	AVPR1A	12	63543865	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	5543118	63543865	70308030	2224	4248											
C12orf66	144577	broad.mit.edu	37	chr12	64609540	64609540	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtgtgctgagggtgtAcatcttctcatagaagtctg	11	8	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64609540	T	T	64609540	3	4	4	1	0	0	0	0	1	0	0	0	1722	391	14	5	906	5	C12orf66	12	64609540	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1065675	64609540	69242355	2225	4249											
CAND1	55832	broad.mit.edu	37	chr12	67675866	67675866	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttactggttgagtctttcttCctgctcccccaaccctgttt	6	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67675866	G	G	67675866	1	3	4	0	1	0	0	0	0	0	0	0	2641	870	30	4		4	CAND1	12	67675866	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3066326	67675866	66176029	2226	4250											
CPSF6	11052	broad.mit.edu	37	chr12	69656269	69656269	+	Missense_Mutation	SNP	A	G	G													agagagaagcagagaacgagAgaggcaccgggatcgtgacc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69656269	G	G	69656269	3	3	4	1	0	0	0	0	1	0	0	0	3861	304	11	5	1620	5	CPSF6	12	69656269	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1980403	69656269	64195626	2227	4251	12	2									
CPSF6	11052	broad.mit.edu	37	chr12	69656271	69656271	+	Missense_Mutation	SNP	A	G	G													agagaagcagagaacgagagAggcaccgggatcgtgaccga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69656271	G	G	69656271	3	3	4	1	0	0	0	0	1	0	0	0	3861	295	11	5	1622	5	CPSF6	12	69656271	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2	69656271	64195624	2228	4252	12	2									
CNOT2	4848	broad.mit.edu	37	chr12	70713103	70713103	+	Missense_Mutation	SNP	G	T	T													ggcatcaccatctacatcagGtcagctgtctcagtttgggg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70713103	T	T	70713103	3	4	4	1	0	0	0	0	1	0	0	0	3651	1261	44	3	207	3	CNOT2	12	70713103	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1056832	70713103	63138792	2229	4253	13	2									
CNOT2	4848	broad.mit.edu	37	chr12	70713110	70713110	+	Silent	SNP	G	T	T													ccatctacatcaggtcagctGtctcagtttggggcaagttt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70713110	T	T	70713110	2	4	4	1	0	0	0	0	0	0	0	1	3651	1364	48	3		3	CNOT2	12	70713110	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	7	70713110	63138785	2230	4254	13	2									
PTPRR	5801	broad.mit.edu	37	chr12	71065710	71065711	+	Intron	DNP	GG	TT	TT													aggctctgatgctggtctctGgtagaagaaggttgctcaca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	71065711	TT	TT	71065710	1	4	4	0	1	0	0	0	0	0	0	0	12918	1363	47	2		2	PTPRR	12	71065710	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	352600	71065710	62786185	2231	4255											
TSPAN8	7103	broad.mit.edu	37	chr12	71531812	71531812	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaagctttgtgttttcaTagagagtttcattcacaatg	7	6	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71531812	C	C	71531812	3	2	4	1	0	0	0	0	1	0	0	0	16778	1406	49	5	364	5	TSPAN8	12	71531812	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	466102	71531812	62320083	2232	4256											
TMEM19	55266	broad.mit.edu	37	chr12	72094844	72094844	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccaactttcatcctAagaataataactgtaatggc	5	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72094844	C	C	72094844	1	2	4	0	1	0	0	0	0	0	0	0	16236	377	13	5		5	TMEM19	12	72094844	3'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	563032	72094844	61757051	2233	4257											
TRHDE	29953	broad.mit.edu	37	chr12	72680634	72680634	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaagatggatgggttaCggatcacttttcacagaccc	12	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72680634	T	T	72680634	3	4	4	1	0	0	0	0	1	0	0	0	16603	536	19	4	959	4	TRHDE	12	72680634	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	585790	72680634	61171261	2234	4258											
TRHDE	29953	broad.mit.edu	37	chr12	73012840	73012840	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagatataatttttctTtctaatttttagaagataca	3	3	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73012840	C	C	73012840	1	2	4	0	1	0	0	0	0	0	0	0	16603	1856	64	5		5	TRHDE	12	73012840	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	332206	73012840	60839055	2235	4259											
GLIPR1L2	144321	broad.mit.edu	37	chr12	75785217	75785217	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagttggggccactgctctGaggctgaaggatcgcggaga	17	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75785217	A	A	75785217	1	1	4	0	1	0	0	0	0	0	0	0	6507	1305	45	4		4	GLIPR1L2	12	75785217	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2772377	75785217	58066678	2236	4260											
BBS10	79738	broad.mit.edu	37	chr12	76742009	76742009	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attccggctgagaagcacctCgccagtgggcttcgtacaca	11	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76742009	A	A	76742009	4	1	4	1	0	0	0	0	0	1	0	0	1341	893	31	3	2049	3	BBS10	12	76742009	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	956792	76742009	57109886	2237	4261											
NAV3	89795	broad.mit.edu	37	chr12	78400265	78400265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcctcccagtactgctgGgcagcctcctgcctctgcca	10	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78400265	T	T	78400265	3	4	4	1	0	0	0	0	1	0	0	0	10279	1232	43	2	977	2	NAV3	12	78400265	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1658256	78400265	55451630	2238	4262											
NAV3	89795	broad.mit.edu	37	chr12	78510671	78510671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatcaccgtcccctctaGgaagaatactcaggtgagaa	8	12	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78510671	T	T	78510671	3	4	4	1	0	0	0	0	1	0	0	0	10279	1000	35	2	2806	2	NAV3	12	78510671	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	110406	78510671	55341224	2239	4263											
NAV3	89795	broad.mit.edu	37	chr12	78513204	78513204	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtggagtagggtcatcTgccatgatcaccagcagtgg	13	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78513204	A	A	78513204	2	1	4	1	0	0	0	0	0	0	0	1	10279	1567	55	5		5	NAV3	12	78513204	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	2533	78513204	55338691	2240	4264											
NAV3	89795	broad.mit.edu	37	chr12	78542637	78542637	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcaaatccataaactgCggagagagctggttgcatca	10	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78542637	G	G	78542637	3	3	4	1	0	0	0	0	1	0	0	0	10279	759	27	4	4809	4	NAV3	12	78542637	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	29433	78542637	55309258	2241	4265											
MYF6	4618	broad.mit.edu	37	chr12	81102490	81102490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgagagcagggacgcgccCtgcgaaaagggcgctctttg	16	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81102490	T	T	81102490	1	4	4	0	1	0	0	0	0	0	0	0	10122	696	24	4		4	MYF6	12	81102490	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2559853	81102490	52749405	2242	4266											
ACSS3	79611	broad.mit.edu	37	chr12	81568762	81568762	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgacattagaaagtgcaaTcaaaatgaataagtgaacat	7	4	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81568762	A	A	81568762	1	1	4	0	1	0	0	0	0	0	0	0	190	1450	50	5		5	ACSS3	12	81568762	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	466272	81568762	52283133	2243	4267											
PPFIA2	8499	broad.mit.edu	37	chr12	81741174	81741174	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgtactgatcacataggGatgttgtgaataagaaaata	9	3	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81741174	T	T	81741174	1	4	4	0	1	0	0	0	0	0	0	0	12406	1189	41	3		3	PPFIA2	12	81741174	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	172412	81741174	52110721	2244	4268											
PPFIA2	8499	broad.mit.edu	37	chr12	81747008	81747008	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgagctaaaaattgtttcTctgtcatcatcatcaatatc	4	8	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81747008	A	A	81747008	3	1	4	1	0	0	0	0	1	0	0	0	12406	1548	54	5	1953	5	PPFIA2	12	81747008	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	5834	81747008	52104887	2245	4269											
C12orf26	84190	broad.mit.edu	37	chr12	82824651	82824651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattttatttaaataatccGtatttttcccccatctgcag	4	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82824651	T	T	82824651	1	4	4	0	1	0	0	0	0	0	0	0	1692	1160	40	3		3	C12orf26	12	82824651	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1077643	82824651	51027244	2246	4270											
SLC6A15	55117	broad.mit.edu	37	chr12	85285975	85285975	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaactctatttttcaaaAcaatgttacttgataggaag	6	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85285975	G	G	85285975	1	3	4	0	1	0	0	0	0	0	0	0	14792	58	2	5		5	SLC6A15	12	85285975	5'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	2461324	85285975	48565920	2247	4271											
ALX1	8092	broad.mit.edu	37	chr12	85677430	85677430	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacaactgtaacagtctcCgaatgtctcccgtgaaaggg	11	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85677430	A	A	85677430	2	1	4	1	0	0	0	0	0	0	0	1	556	644	23	1		1	ALX1	12	85677430	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	391455	85677430	48174465	2248	4272											
PLXNC1	10154	broad.mit.edu	37	chr12	94618082	94618082	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caactttaccaactgctcatCattaaaagagtaagatttta	4	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94618082	T	T	94618082	3	4	4	1	0	0	0	0	1	0	0	0	12221	838	29	4	1807	4	PLXNC1	12	94618082	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	8940652	94618082	39233813	2249	4273											
PLXNC1	10154	broad.mit.edu	37	chr12	94654449	94654449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccttcctaaccattgcaCtgcaaaccaagctggtctac	5	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94654449	A	A	94654449	3	1	4	1	0	0	0	0	1	0	0	0	12221	564	20	3	3361	3	PLXNC1	12	94654449	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	36367	94654449	39197446	2250	4274											
NDUFA12	55967	broad.mit.edu	37	chr12	95397411	95397411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcggagaccgccgtggcCggtgatctgctgcagcccgc	15	16	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95397411	A	A	95397411	3	1	4	1	0	0	0	0	1	0	0	0	10357	652	23	1	407	1	NDUFA12	12	95397411	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	742962	95397411	38454484	2251	4275											
LTA4H	4048	broad.mit.edu	37	chr12	96415878	96415878	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatgtgtacaagctaactGtagtttaccgccaatgaaaa	9	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96415878	A	A	96415878	1	1	4	0	1	0	0	0	0	0	0	0	9156	1392	48	4		4	LTA4H	12	96415878	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1018467	96415878	37436017	2252	4276											
ANKS1B	56899	broad.mit.edu	37	chr12	99548047	99548047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacaaaaggcagctccgtGgacacagagagcttcttacc	10	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99548047	T	T	99548047	1	4	4	0	1	0	0	0	0	0	0	0	689	1363	47	2		2	ANKS1B	12	99548047	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3132169	99548047	34303848	2253	4277											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100444090	100444090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaattttaaataccacaaCggacatctattaatgattgc	5	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100444090	T	T	100444090	3	4	4	1	0	0	0	0	1	0	0	0	17095	536	19	4	840	4	UHRF1BP1L	12	100444090	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	896043	100444090	33407805	2254	4278											
SCYL2	55681	broad.mit.edu	37	chr12	100660957	100660957	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggccggcaggtcttttagTctttttccccctcccttact	7	16	2	0	rs112573754		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100660957	G	G	100660957	1	3	4	0	1	0	0	0	0	0	0	0	14061	1682	58	5		5	SCYL2	12	100660957	5'Flank	SNP	T	TCGA-05-4382-01A-01D-1265-08	216867	100660957	33190938	2255	4279											
ANO4	121601	broad.mit.edu	37	chr12	101336246	101336246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtacagaaaatccaaccCccagactgaaaagagagaag	9	9	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101336246	A	A	101336246	3	1	4	1	0	0	0	0	1	0	0	0	699	623	22	2	294	2	ANO4	12	101336246	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	675289	101336246	32515649	2256	4280											
SLC5A8	160728	broad.mit.edu	37	chr12	101555862	101555862	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatcagtggagtcctaagaGagcaaaaacacaacggtaag	10	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101555862	T	T	101555862	1	4	4	0	1	0	0	0	0	0	0	0	14785	957	33	3		3	SLC5A8	12	101555862	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	219616	101555862	32296033	2257	4281											
PAH	5053	broad.mit.edu	37	chr12	103271254	103271254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcacagggtggtcagcatCcagttccgctccatagctga	10	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103271254	A	A	103271254	3	1	4	1	0	0	0	0	1	0	0	0	11488	855	30	3	971	3	PAH	12	103271254	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1715392	103271254	30580641	2258	4282											
STAB2	55576	broad.mit.edu	37	chr12	104015988	104015988	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgaatagttatgtgtgaTaaaaaagaaatttcagcaga	8	4	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104015988	C	C	104015988	1	2	4	0	1	0	0	0	0	0	0	0	15356	1421	49	5		5	STAB2	12	104015988	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	744734	104015988	29835907	2259	4283											
STAB2	55576	broad.mit.edu	37	chr12	104099529	104099529	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtacaataattgaatcataCtaactactgcagcaccattg	5	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104099529	T	T	104099529	1	4	4	0	1	0	0	0	0	0	0	0	15356	580	20	4		4	STAB2	12	104099529	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	83541	104099529	29752366	2260	4284											
STAB2	55576	broad.mit.edu	37	chr12	104122871	104122871	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcctcagcaaactaatgCaggaacagaaaacccaatgc	6	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104122871	G	G	104122871	1	3	4	0	1	0	0	0	0	0	0	0	15356	725	25	4		4	STAB2	12	104122871	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	23342	104122871	29729024	2261	4285											
NT5DC3	51559	broad.mit.edu	37	chr12	104186774	104186774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgcaaactgtctgttaCgtgctcatgtcactctcctc	7	13	4	0	rs114191905	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104186774	A	A	104186774	1	1	4	0	1	0	0	0	0	0	0	0	10787	551	19	3		3	NT5DC3	12	104186774	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	63903	104186774	29665121	2262	4286											
CHST11	50515	broad.mit.edu	37	chr12	105151598	105151598	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataaagggggtggggagaggGagagaatcatgctttttaat	16	2	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105151598	T	T	105151598	1	4	4	0	1	0	0	0	0	0	0	0	3430	1189	41	3		3	CHST11	12	105151598	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	964824	105151598	28700297	2263	4287											
ALDH1L2	160428	broad.mit.edu	37	chr12	105467714	105467714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccctctttgcggaggtGgctatagacttcttgtccaa	12	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105467714	T	T	105467714	3	4	4	1	0	0	0	0	1	0	0	0	495	1348	47	2	2741	2	ALDH1L2	12	105467714	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	316116	105467714	28384181	2264	4288											
KIAA1033	23325	broad.mit.edu	37	chr12	105543557	105543557	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctattctttttaaggtatttGattaagctattgagtatatg	7	3	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105543557	C	C	105543557	1	2	4	0	1	0	0	0	0	0	0	0	8276	1305	45	4		4	KIAA1033	12	105543557	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	75843	105543557	28308338	2265	4289											
NUAK1	9891	broad.mit.edu	37	chr12	106477483	106477483	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgtcgcatttaattgtttGaactggacttggagctcaag	10	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106477483	A	A	106477483	1	1	4	0	1	0	0	0	0	0	0	0	10807	1305	45	4		4	NUAK1	12	106477483	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	933926	106477483	27374412	2266	4290											
NUAK1	9891	broad.mit.edu	37	chr12	106480519	106480519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcagccataccttgtgaCaatagtgcacagcagagacg	12	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106480519	A	A	106480519	3	1	4	1	0	0	0	0	1	0	0	0	10807	478	17	3	1499	3	NUAK1	12	106480519	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3036	106480519	27371376	2267	4291											
POLR3B	55703	broad.mit.edu	37	chr12	106763069	106763069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatatcttaatatctatGttgggcttcctgatgttgaa	8	6	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106763069	T	T	106763069	3	4	4	1	0	0	0	0	1	0	0	0	12324	1377	48	3	262	3	POLR3B	12	106763069	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	282550	106763069	27088826	2268	4292											
RFX4	5992	broad.mit.edu	37	chr12	107113822	107113822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataccatggttgaccgctGtgttgtgaaggttggtaaac	14	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107113822	T	T	107113822	3	4	4	1	0	0	0	0	1	0	0	0	13373	1377	48	3	1442	3	RFX4	12	107113822	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	350753	107113822	26738073	2269	4293											
BTBD11	121551	broad.mit.edu	37	chr12	108045420	108045420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttccatccacctcccaGcctctaacagactctttttg	3	17	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108045420	T	T	108045420	1	4	4	0	1	0	0	0	0	0	0	0	1548	986	34	3		3	BTBD11	12	108045420	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	931598	108045420	25806475	2270	4294											
WSCD2	9671	broad.mit.edu	37	chr12	108589794	108589794	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggcccagctgagggtgCtgagctgtccttcttgggtg	17	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108589794	T	T	108589794	3	4	4	1	0	0	0	0	1	0	0	0	17534	797	28	4	187	4	WSCD2	12	108589794	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	544374	108589794	25262101	2271	4295											
WSCD2	9671	broad.mit.edu	37	chr12	108641840	108641840	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactggctcaagtttggcaAgaaggtgctggtggtgcact	16	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108641840	C	C	108641840	3	2	4	1	0	0	0	0	1	0	0	0	17534	72	3	5	1448	5	WSCD2	12	108641840	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	52046	108641840	25210055	2272	4296											
DAO	1610	broad.mit.edu	37	chr12	109288032	109288032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccactaccctgttggttgCtaccaggtggcaagagaagg	12	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109288032	A	A	109288032	1	1	4	0	1	0	0	0	0	0	0	0	4264	812	28	3		3	DAO	12	109288032	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	646192	109288032	24563863	2273	4297											
SVOP	55530	broad.mit.edu	37	chr12	109306216	109306216	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcatactcttgggtgagttCttgatgtcggcagtgacaat	12	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109306216	A	A	109306216	1	1	4	0	1	0	0	0	0	0	0	0	15541	928	32	3		3	SVOP	12	109306216	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	18184	109306216	24545679	2274	4298											
TRPV4	59341	broad.mit.edu	37	chr12	110230345	110230345	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgtccagaccatgcctccTgcccccacggtacccagcat	8	18	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110230345	A	A	110230345	1	1	4	0	1	0	0	0	0	0	0	0	16723	1595	55	5		5	TRPV4	12	110230345	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	924129	110230345	23621550	2275	4299											
PPTC7	160760	broad.mit.edu	37	chr12	110976020	110976020	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttgggtcataggccagcTcatgagcttgctcagcaatg	11	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110976020	C	C	110976020	3	2	4	1	0	0	0	0	1	0	0	0	12514	1551	54	5	137	5	PPTC7	12	110976020	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	745675	110976020	22875875	2276	4300											
CCDC63	160762	broad.mit.edu	37	chr12	111290845	111290845	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccactttacacgttagctCgtctcatcctgacaaacaga	5	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111290845	T	T	111290845	1	4	4	0	1	0	0	0	0	0	0	0	2862	899	31	4		4	CCDC63	12	111290845	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	314825	111290845	22561050	2277	4301											
CUX2	23316	broad.mit.edu	37	chr12	111744654	111744654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattctgcttgggattcagGggtggggaggccagacctgt	17	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111744654	T	T	111744654	1	4	4	0	1	0	0	0	0	0	0	0	4098	1247	43	2		2	CUX2	12	111744654	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	453809	111744654	22107241	2278	4302											
ACAD10	80724	broad.mit.edu	37	chr12	112194110	112194110	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaagggctgacccagggcCgcctccctccactctgtgtc	11	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112194110	T	T	112194110	1	4	4	0	1	0	0	0	0	0	0	0	108	667	23	4		4	ACAD10	12	112194110	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	449456	112194110	21657785	2279	4303											
C12orf51	283450	broad.mit.edu	37	chr12	112600732	112600732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgatgtctgagttttggCacgtggggctcctgttcatt	12	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112600732	A	A	112600732	1	1	4	0	1	0	0	0	0	0	0	0	1709	725	25	3		3	C12orf51	12	112600732	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	406622	112600732	21251163	2280	4304											
OAS3	4940	broad.mit.edu	37	chr12	113384680	113384680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcctccgaactgtcctgGgcctgatccaacagcatcag	10	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113384680	T	T	113384680	3	4	4	1	0	0	0	0	1	0	0	0	10896	1232	43	2	783	2	OAS3	12	113384680	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	783948	113384680	20467215	2281	4305											
SLC24A6	80024	broad.mit.edu	37	chr12	113758051	113758051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagcccccactgaccaccCctcacacctctctgtcccag	4	22	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113758051	T	T	113758051	1	4	4	0	1	0	0	0	0	0	0	0	14584	638	22	4		4	SLC24A6	12	113758051	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	373371	113758051	20093844	2282	4306											
PLBD2	196463	broad.mit.edu	37	chr12	113822701	113822701	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacaaggcgttcatcccGggtgggcccagccccgggag	15	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113822701	T	T	113822701	2	4	4	1	0	0	0	0	0	0	0	1	12121	1103	39	1		1	PLBD2	12	113822701	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	64650	113822701	20029194	2283	4307											
MED13L	23389	broad.mit.edu	37	chr12	116428865	116428865	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacagtggcacttctcacCagagcttcgtccacttttcc	7	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116428865	A	A	116428865	2	1	4	1	0	0	0	0	0	0	0	1	9524	581	21	2		2	MED13L	12	116428865	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2606164	116428865	17423030	2284	4308											
FBXO21	23014	broad.mit.edu	37	chr12	117593705	117593705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccggatccactcgtgtccCatcatgcaggtggggtccca	11	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117593705	A	A	117593705	3	1	4	1	0	0	0	0	1	0	0	0	5790	594	21	2	307	2	FBXO21	12	117593705	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1164840	117593705	16258190	2285	4309											
WSB2	55884	broad.mit.edu	37	chr12	118480496	118480496	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggggcgggcaggggcgatTaggaaaaaactgtctaaaag	16	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118480496	A	A	118480496	1	1	4	0	1	0	0	0	0	0	0	0	17532	1769	61	5		5	WSB2	12	118480496	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	886791	118480496	15371399	2286	4310											
VSIG10	54621	broad.mit.edu	37	chr12	118533308	118533308	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaaggctccgagcacctctCcagccccggtccctgccagc	9	21	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118533308	G	G	118533308	1	3	4	0	1	0	0	0	0	0	0	0	17350	870	30	4		4	VSIG10	12	118533308	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	52812	118533308	15318587	2287	4311											
TAOK3	51347	broad.mit.edu	37	chr12	118599963	118599963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacccattagtgtttggCagcaggacttaatgagatta	9	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118599963	A	A	118599963	1	1	4	0	1	0	0	0	0	0	0	0	15668	725	25	3		3	TAOK3	12	118599963	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	66655	118599963	15251932	2288	4312											
CIT	11113	broad.mit.edu	37	chr12	120146113	120146113	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtccacaagacacagtgcCcgctcttctcctgaacagga	8	15	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120146113	A	A	120146113	2	1	4	1	0	0	0	0	0	0	0	1	3469	610	22	2		2	CIT	12	120146113	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1546150	120146113	13705782	2289	4313											
CIT	11113	broad.mit.edu	37	chr12	120221783	120221783	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtctcagaggccttcagctCcacctccttctgactaagca	7	15	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120221783	A	A	120221783	4	1	4	1	0	0	0	0	0	1	0	0	3469	864	30	3	4753	3	CIT	12	120221783	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	75670	120221783	13630112	2290	4314											
GCN1L1	10985	broad.mit.edu	37	chr12	120599243	120599243	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgggaaaagccaccagcttGaggccaccaagctcagcagc	12	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120599243	C	C	120599243	1	2	4	0	1	0	0	0	0	0	0	0	6361	1305	45	4		4	GCN1L1	12	120599243	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	377460	120599243	13252652	2291	4315											
GCN1L1	10985	broad.mit.edu	37	chr12	120628063	120628063	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaagaaagaaaaacaaTgaatattgtccagggtatgt	9	3	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120628063	A	A	120628063	1	1	4	0	1	0	0	0	0	0	0	0	6361	1479	51	5		5	GCN1L1	12	120628063	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	28820	120628063	13223832	2292	4316											
RNF10	9921	broad.mit.edu	37	chr12	121004691	121004691	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccttcaattcttatacctGctcctctgattctgctttgg	6	12	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121004691	C	C	121004691	3	2	4	1	0	0	0	0	1	0	0	0	13533	1319	46	4	1999	4	RNF10	12	121004691	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	376628	121004691	12847204	2293	4317											
RHOF	54509	broad.mit.edu	37	chr12	122217461	122217461	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcgccttcttcagagcgctGagagccaccttggcggcctc	12	15	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122217461	C	C	122217461	2	2	4	1	0	0	0	0	0	0	0	1	13447	1277	45	4		4	RHOF	12	122217461	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1212770	122217461	11634434	2294	4318											
RSRC2	65117	broad.mit.edu	37	chr12	123011385	123011385	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctggctttaaactcagattCggtacctaccgccatagttc	7	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123011385	G	G	123011385	1	3	4	0	1	0	0	0	0	0	0	0	13826	899	31	4		4	RSRC2	12	123011385	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	793924	123011385	10840510	2295	4319											
KNTC1	9735	broad.mit.edu	37	chr12	123041816	123041816	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatctcattcctggagcGcatgaggattcacctttttg	8	9	2	1	rs145524830	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123041816	C	C	123041816	1	2	4	0	1	0	0	0	0	0	0	0	8499	1102	38	4		4	KNTC1	12	123041816	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	30431	123041816	10810079	2296	4320											
KNTC1	9735	broad.mit.edu	37	chr12	123070121	123070121	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctataagccatagaccaGaagaaacaatgtgttgtgca	8	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123070121	A	A	123070121	1	1	4	0	1	0	0	0	0	0	0	0	8499	957	33	4		4	KNTC1	12	123070121	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	28305	123070121	10781774	2297	4321											
KNTC1	9735	broad.mit.edu	37	chr12	123105090	123105090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtatatccagttagaacttCcggcttttgcattagcttgt	8	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123105090	T	T	123105090	3	4	4	1	0	0	0	0	1	0	0	0	8499	855	30	4	6448	4	KNTC1	12	123105090	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	34969	123105090	10746805	2298	4322											
SBNO1	55206	broad.mit.edu	37	chr12	123815810	123815810	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatgctcgttttctactcAacaaataattttcatagatg	4	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123815810	C	C	123815810	3	2	4	1	0	0	0	0	1	0	0	0	13974	131	5	5	3259	5	SBNO1	12	123815810	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	710720	123815810	10036085	2299	4323											
TCTN2	79867	broad.mit.edu	37	chr12	124171699	124171699	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccctctccagaggttccGtgcctaaagggttcaattct	8	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124171699	T	T	124171699	1	4	4	0	1	0	0	0	0	0	0	0	15845	1160	40	3		3	TCTN2	12	124171699	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	355889	124171699	9680196	2300	4324											
DNAH10	196385	broad.mit.edu	37	chr12	124325847	124325847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccgtgcaggtcttacagGgctgcctctccctgtttgca	10	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124325847	T	T	124325847	1	4	4	0	1	0	0	0	0	0	0	0	4638	1247	43	2		2	DNAH10	12	124325847	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	154148	124325847	9526048	2301	4325											
ZNF664	144348	broad.mit.edu	37	chr12	124497156	124497156	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaaggccttcaggcacacCtccagcctctgcatgcatca	10	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124497156	T	T	124497156	2	4	4	1	0	0	0	0	0	0	0	1	18199	668	24	4		4	ZNF664	12	124497156	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	171309	124497156	9354739	2302	4326											
TMEM132B	114795	broad.mit.edu	37	chr12	125834246	125834246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagataatcccccaggagCtcctgttgacatctacagcc	8	13	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125834246	A	A	125834246	3	1	4	1	0	0	0	0	1	0	0	0	16169	797	28	3	307	3	TMEM132B	12	125834246	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1337090	125834246	8017649	2303	4327											
TMEM132B	114795	broad.mit.edu	37	chr12	126135350	126135350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgagtcacctgacttaGggcagctgacctacatgctg	12	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126135350	T	T	126135350	3	4	4	1	0	0	0	0	1	0	0	0	16169	1000	35	2	1776	2	TMEM132B	12	126135350	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	301104	126135350	7716545	2304	4328											
TMEM132B	114795	broad.mit.edu	37	chr12	126139132	126139132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctcccagaggacggcgGcccatacaccaactccatcc	7	19	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126139132	T	T	126139132	3	4	4	1	0	0	0	0	1	0	0	0	16169	1203	42	3	3147	3	TMEM132B	12	126139132	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3782	126139132	7712763	2305	4329											
RIMBP2	23504	broad.mit.edu	37	chr12	130892065	130892065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggacagggcttgtcaggGgctggccatgtccctgggaa	18	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130892065	T	T	130892065	1	4	4	0	1	0	0	0	0	0	0	0	13472	1247	43	2		2	RIMBP2	12	130892065	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4752933	130892065	2959830	2306	4330											
EP400	57634	broad.mit.edu	37	chr12	132470975	132470975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagtgcgcgtctctggtGctgtgggcgctcaggtattt	16	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132470975	T	T	132470975	1	4	4	0	1	0	0	0	0	0	0	0	5191	1334	46	3		3	EP400	12	132470975	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1578910	132470975	1380920	2307	4331											
EP400	57634	broad.mit.edu	37	chr12	132476070	132476070	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagtagagtgggccttttCattcttatccagaggaattt	9	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132476070	A	A	132476070	1	1	4	0	1	0	0	0	0	0	0	0	5191	841	29	3		3	EP400	12	132476070	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5095	132476070	1375825	2308	4332											
EP400	57634	broad.mit.edu	37	chr12	132535320	132535320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaggcatcagctggacGtggcagtgcgcagaacctgc	14	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132535320	T	T	132535320	1	4	4	0	1	0	0	0	0	0	0	0	5191	1160	40	3		3	EP400	12	132535320	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	59250	132535320	1316575	2309	4333											
POLE	5426	broad.mit.edu	37	chr12	133241100	133241100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcatggctcctccagggGgtatcagaggcagtgaggag	17	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133241100	A	A	133241100	1	1	4	0	1	0	0	0	0	0	0	0	12291	1247	43	4		4	POLE	12	133241100	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	705780	133241100	610795	2310	4334											
TUBA3C	7278	broad.mit.edu	37	chr13	19753702	19753702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggatagagatacactcaCgctgtgaaccagaacataaa	9	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19753702	A	A	19753702	3	1	4	1	0	0	0	0	1	0	0	0	16872	550	19	3	1363	3	TUBA3C	13	19753702	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08		19753702	95416176	2311	4335											
TPTE2	93492	broad.mit.edu	37	chr13	20039416	20039416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaacgtaagtgaggtctaGgtcaaatccatcccttgtgt	10	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20039416	T	T	20039416	3	4	4	1	0	0	0	0	1	0	0	0	16555	991	35	2	961	2	TPTE2	13	20039416	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	285714	20039416	95130462	2312	4336											
SACS	26278	broad.mit.edu	37	chr13	23915735	23915735	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatggataccattgaacaatCaattctctgccaggccagaa	7	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23915735	A	A	23915735	3	1	4	1	0	0	0	0	1	0	0	0	13915	825	29	3	11463	3	SACS	13	23915735	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3876319	23915735	91254143	2313	4337											
MIPEP	4285	broad.mit.edu	37	chr13	24380111	24380112	+	Missense_Mutation	DNP	CC	AA	AA													tatttggaacatatggtaggCcatagaatttctcttgtgtt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24380112	AA	AA	24380111	3	1	4	1	0	0	0	0	1	0	0	0	9685	739	26	3	331	3	MIPEP	13	24380111	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	464376	24380111	90789767	2314	4338											
ATP12A	479	broad.mit.edu	37	chr13	25266991	25266991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gataataacattgtgtaaccGagcagagttcaagccaggac	10	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25266991	T	T	25266991	3	4	4	1	0	0	0	0	1	0	0	0	1126	1058	37	3	1390	3	ATP12A	13	25266991	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	886880	25266991	89902887	2315	4339											
RNF17	56163	broad.mit.edu	37	chr13	25348978	25348978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtaaatactagacaaCgctactacccaatggctgga	8	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25348978	A	A	25348978	3	1	4	1	0	0	0	0	1	0	0	0	13572	536	19	3	263	3	RNF17	13	25348978	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	81987	25348978	89820900	2316	4340											
RNF17	56163	broad.mit.edu	37	chr13	25419089	25419089	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtagacttaaagttattAttttcttaggtcttgctgta	7	5	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25419089	G	G	25419089	1	3	4	0	1	0	0	0	0	0	0	0	13572	464	16	5		5	RNF17	13	25419089	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	70111	25419089	89750789	2317	4341											
NUPL1	9818	broad.mit.edu	37	chr13	25901257	25901257	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataggtattttggataactActggtagcccctttaagaaa	8	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25901257	T	T	25901257	1	4	4	0	1	0	0	0	0	0	0	0	10869	406	14	5		5	NUPL1	13	25901257	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	482168	25901257	89268621	2318	4342											
ATP8A2	51761	broad.mit.edu	37	chr13	26413610	26413610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggatccttcacaatgtGgcgtttgttgagagtttcac	11	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26413610	T	T	26413610	1	4	4	0	1	0	0	0	0	0	0	0	1197	1363	47	2		2	ATP8A2	13	26413610	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	512353	26413610	88756268	2319	4343											
USP12	219333	broad.mit.edu	37	chr13	27664409	27664409	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagtaaacaattcttttccCtcaagttcaaaagagaacta	4	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27664409	T	T	27664409	1	4	4	0	1	0	0	0	0	0	0	0	17169	696	24	4		4	USP12	13	27664409	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1250799	27664409	87505469	2320	4344											
RASL11A	387496	broad.mit.edu	37	chr13	27847369	27847369	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaccttttgcatgcccggcAggtgcagacacaggacggta	14	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27847369	T	T	27847369	3	4	4	1	0	0	0	0	1	0	0	0	13189	188	7	5	481	5	RASL11A	13	27847369	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	182960	27847369	87322509	2321	4345											
FLT1	2321	broad.mit.edu	37	chr13	28893703	28893703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggggccttgagcagaaGggcatgaaaacaaagcacat	13	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28893703	T	T	28893703	1	4	4	0	1	0	0	0	0	0	0	0	5999	1015	35	2		2	FLT1	13	28893703	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1046334	28893703	86276175	2322	4346											
FLT1	2321	broad.mit.edu	37	chr13	28959104	28959104	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcatgacagtctaaagtGgtggaactgctgatggccac	12	8	1	2	rs146170931		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28959104	T	T	28959104	2	4	4	1	0	0	0	0	0	0	0	1	5999	1335	47	2		2	FLT1	13	28959104	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	65401	28959104	86210774	2323	4347											
MTUS2	23281	broad.mit.edu	37	chr13	29598795	29598795	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcagcccatttccattaAgtaggactgcatggcaagca	10	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29598795	C	C	29598795	1	2	4	0	1	0	0	0	0	0	0	0	10060	87	3	5		5	MTUS2	13	29598795	5'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	639691	29598795	85571083	2324	4348											
MTUS2	23281	broad.mit.edu	37	chr13	30062173	30062173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgtgtgcagcaggcagGggtgggtggtgcaatccgag	19	9	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30062173	T	T	30062173	1	4	4	0	1	0	0	0	0	0	0	0	10060	1247	43	2		2	MTUS2	13	30062173	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	463378	30062173	85107705	2325	4349											
SLC7A1	6541	broad.mit.edu	37	chr13	30110070	30110070	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggacccgagcaccaaactCgccatagcacaggccagcca	11	16	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30110070	A	A	30110070	4	1	4	1	0	0	0	0	0	1	0	0	14806	893	31	3	1677	3	SLC7A1	13	30110070	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	47897	30110070	85059808	2326	4350											
B3GALTL	145173	broad.mit.edu	37	chr13	31891838	31891838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggtaactatgatcacaGctttcttcaactactttaaa	7	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31891838	T	T	31891838	1	4	4	0	1	0	0	0	0	0	0	0	1257	986	34	3		3	B3GALTL	13	31891838	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1781768	31891838	83278040	2327	4351											
B3GALTL	145173	broad.mit.edu	37	chr13	31903674	31903674	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accctaaggactacctttctCatcaagttcccatatcgttc	4	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31903674	T	T	31903674	3	4	4	1	0	0	0	0	1	0	0	0	1257	826	29	4	1424	4	B3GALTL	13	31903674	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	11836	31903674	83266204	2328	4352											
RXFP2	122042	broad.mit.edu	37	chr13	32339338	32339338	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcacatgaaaaccaagaaAaaacccaatagtgttgcttg	7	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32339338	G	G	32339338	1	3	4	0	1	0	0	0	0	0	0	0	13871	29	1	5		5	RXFP2	13	32339338	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	435664	32339338	82830540	2329	4353											
RXFP2	122042	broad.mit.edu	37	chr13	32352591	32352591	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattttaaaataataaaaaGactgtcctaaaagtgtcata	4	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32352591	T	T	32352591	1	4	4	0	1	0	0	0	0	0	0	0	13871	957	33	3		3	RXFP2	13	32352591	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	13253	32352591	82817287	2330	4354											
RXFP2	122042	broad.mit.edu	37	chr13	32360555	32360555	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgataacggaactatcacCtcacctttttaaagacttga	5	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32360555	T	T	32360555	3	4	4	1	0	0	0	0	1	0	0	0	13871	681	24	4	1011	4	RXFP2	13	32360555	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7964	32360555	82809323	2331	4355											
FRY	10129	broad.mit.edu	37	chr13	32783213	32783213	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccagaagccacgtcactGgtcctgaacaacctcatgta	7	14	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32783213	T	T	32783213	2	4	4	1	0	0	0	0	0	0	0	1	6123	1335	47	2		2	FRY	13	32783213	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	422658	32783213	82386665	2332	4356											
FRY	10129	broad.mit.edu	37	chr13	32805373	32805373	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaaaaatcaaaattcaaaGagtgctgaacagctcactaa	5	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32805373	T	T	32805373	3	4	4	1	0	0	0	0	1	0	0	0	6123	933	33	3	5625	3	FRY	13	32805373	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	22160	32805373	82364505	2333	4357											
FRY	10129	broad.mit.edu	37	chr13	32868765	32868765	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcacacctggttgttactCtgtcatggttggagtctagc	11	9	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32868765	A	A	32868765	1	1	4	0	1	0	0	0	0	0	0	0	6123	928	32	3		3	FRY	13	32868765	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	63392	32868765	82301113	2334	4358											
BRCA2	675	broad.mit.edu	37	chr13	32913803	32913803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaataaacttgattctGgtattgagccagtattgaag	8	5	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32913803	T	T	32913803	3	4	4	1	0	0	0	0	1	0	0	0	1508	1348	47	2	5349	2	BRCA2	13	32913803	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	45038	32913803	82256075	2335	4359											
BRCA2	675	broad.mit.edu	37	chr13	32960195	32960195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctagagtactgtgagtGggccctgagactggctgctg	15	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32960195	T	T	32960195	1	4	4	0	1	0	0	0	0	0	0	0	1508	1363	47	2		2	BRCA2	13	32960195	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	46392	32960195	82209683	2336	4360											
STARD13	90627	broad.mit.edu	37	chr13	33686831	33686831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgcctgctttgggattaCtgttgttactgagaaaaaaa	10	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33686831	A	A	33686831	1	1	4	0	1	0	0	0	0	0	0	0	15374	580	20	3		3	STARD13	13	33686831	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	726636	33686831	81483047	2337	4361											
NBEA	26960	broad.mit.edu	37	chr13	36241515	36241515	+	Frame_Shift_Del	DEL	C	-	-													tgtccccactttgcagagggCccttgccttgtccacaccat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36241515	-	-	36241515	7	5	4	1	0	1	0	1	0	0	0	0	10281	726	26	0	8628	0	NBEA	13	36241515	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	2554684	36241515	78928363	2338	4362											
SOHLH2	54937	broad.mit.edu	37	chr13	36748843	36748843	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaggataaaattcaaagcTttgggagtcaaatacctggg	10	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36748843	A	A	36748843	1	1	4	0	1	0	0	0	0	0	0	0	15038	1624	56	5		5	SOHLH2	13	36748843	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	507328	36748843	78421035	2339	4363											
SPG20	23111	broad.mit.edu	37	chr13	36888510	36888510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctttctggattgccttaCcagtaatctcagcacctttg	6	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36888510	A	A	36888510	3	1	4	1	0	0	0	0	1	0	0	0	15160	507	18	3	679	3	SPG20	13	36888510	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	139667	36888510	78281368	2340	4364											
FREM2	341640	broad.mit.edu	37	chr13	39435606	39435606	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctggggttgttggagcaGagccgttctcagctaaattg	13	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39435606	T	T	39435606	4	4	4	1	0	0	0	0	0	1	0	0	6105	943	33	3	7616	3	FREM2	13	39435606	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2547096	39435606	75734272	2341	4365											
STOML3	161003	broad.mit.edu	37	chr13	39564698	39564698	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctataaatgaaattgaggccGatttctgcaaatatatctca	6	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39564698	T	T	39564698	1	4	4	0	1	0	0	0	0	0	0	0	15433	1073	37	3		3	STOML3	13	39564698	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	129092	39564698	75605180	2342	4366											
COG6	57511	broad.mit.edu	37	chr13	40293979	40293979	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcaggtaaatttttctatAaaatgactattgactatgat	5	4	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40293979	T	T	40293979	1	4	4	0	1	0	0	0	0	0	0	0	3694	377	13	5		5	COG6	13	40293979	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	729281	40293979	74875899	2343	4367											
AKAP11	11215	broad.mit.edu	37	chr13	42876961	42876961	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaggaaggtggtaataGtgagttgataatggatcagt	13	2	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42876961	A	A	42876961	3	1	4	1	0	0	0	0	1	0	0	0	447	1029	36	4	4101	4	AKAP11	13	42876961	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2582982	42876961	72292917	2344	4368											
EPSTI1	94240	broad.mit.edu	37	chr13	43462494	43462494	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagaagccagtcactcctGactgcacggtcaagtgtgtg	13	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43462494	T	T	43462494	2	4	4	1	0	0	0	0	0	0	0	1	5240	1277	45	3		3	EPSTI1	13	43462494	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	585533	43462494	71707384	2345	4369											
ENOX1	55068	broad.mit.edu	37	chr13	43930241	43930241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaagtccacatgaaggcGgcctgaatcctttttgtcgg	12	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43930241	T	T	43930241	3	4	4	1	0	0	0	0	1	0	0	0	5168	1116	39	1	1334	1	ENOX1	13	43930241	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	467747	43930241	71239637	2346	4370											
LCP1	3936	broad.mit.edu	37	chr13	46721268	46721268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggatgtctcagggctgGgtcaaggctctccatgcaca	12	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46721268	T	T	46721268	1	4	4	0	1	0	0	0	0	0	0	0	8763	1247	43	2		2	LCP1	13	46721268	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2791027	46721268	68448610	2347	4371											
RCBTB2	1102	broad.mit.edu	37	chr13	49086998	49086998	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccattgcccagctggctaTaagcattatgaccccaggta	8	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49086998	C	C	49086998	3	2	4	1	0	0	0	0	1	0	0	0	13280	1406	49	5	1308	5	RCBTB2	13	49086998	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2365730	49086998	66082880	2348	4372											
UTP14C	9724	broad.mit.edu	37	chr13	52598371	52598371	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagctctaatgcagtgtgttCctgatgtttacattgattca	8	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52598371	G	G	52598371	1	3	4	0	1	0	0	0	0	0	0	0	17223	855	30	4		4	UTP14C	13	52598371	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3511373	52598371	62571507	2349	4373											
VPS36	51028	broad.mit.edu	37	chr13	53007779	53007779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctggaatagatggagagCcagaatttaacagttacctc	11	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53007779	A	A	53007779	1	1	4	0	1	0	0	0	0	0	0	0	17331	754	26	3		3	VPS36	13	53007779	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	409408	53007779	62162099	2350	4374											
CKAP2	26586	broad.mit.edu	37	chr13	53030734	53030734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaagcaggaaaatgagatGttatccaggtaaggtcaagt	11	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53030734	T	T	53030734	3	4	4	1	0	0	0	0	1	0	0	0	3473	1377	48	3	153	3	CKAP2	13	53030734	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	22955	53030734	62139144	2351	4375											
OLFM4	10562	broad.mit.edu	37	chr13	53625103	53625103	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatcatctgcctcttcagGcgcattttgcaataaagtct	8	10	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53625103	A	A	53625103	1	1	4	0	1	0	0	0	0	0	0	0	10950	1218	42	4		4	OLFM4	13	53625103	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	594369	53625103	61544775	2352	4376											
PCDH20	64881	broad.mit.edu	37	chr13	61985498	61985498	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttcccctttccttaaacAgatgtatatgcccatccctg	4	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61985498	T	T	61985498	3	4	4	1	0	0	0	0	1	0	0	0	11609	188	7	5	125	5	PCDH20	13	61985498	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	8360395	61985498	53184380	2353	4377											
PCDH20	64881	broad.mit.edu	37	chr13	61985943	61985943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcatagacttctgtaacCggggagcctggcagagtaga	13	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61985943	A	A	61985943	2	1	4	1	0	0	0	0	0	0	0	1	11609	639	23	1		1	PCDH20	13	61985943	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	445	61985943	53183935	2354	4378											
PCDH9	5101	broad.mit.edu	37	chr13	67801880	67801880	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtatggccgtactggatttCtgtggagtgcctccatcctc	11	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67801880	A	A	67801880	3	1	4	1	0	0	0	0	1	0	0	0	11612	912	32	3	3036	3	PCDH9	13	67801880	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	5815937	67801880	47367998	2355	4379											
DACH1	1602	broad.mit.edu	37	chr13	72049909	72049909	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttgttcacgccgtttcGtctcaaactcaagtgcttcc	7	14	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72049909	A	A	72049909	3	1	4	1	0	0	0	0	1	0	0	0	4253	1145	40	4	189	4	DACH1	13	72049909	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4248029	72049909	43119969	2356	4380											
DACH1	1602	broad.mit.edu	37	chr13	72050030	72050030	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattatttttaaattttcatAatgctgctaatttccaaatg	3	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72050030	T	T	72050030	1	4	4	0	1	0	0	0	0	0	0	0	4253	377	13	5		5	DACH1	13	72050030	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	121	72050030	43119848	2357	4381											
COMMD6	170622	broad.mit.edu	37	chr13	76112043	76112043	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggcgcatggggcggaCgtagcaggggaagctgaaaa	19	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76112043	A	A	76112043	1	1	4	0	1	0	0	0	0	0	0	0	3752	551	19	3		3	COMMD6	13	76112043	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	4062013	76112043	39057835	2358	4382											
LMO7	4008	broad.mit.edu	37	chr13	76375185	76375185	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttatttttttctccttcAtgatggtgatagtttcattt	6	5	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76375185	G	G	76375185	1	3	4	0	1	0	0	0	0	0	0	0	8929	232	8	5		5	LMO7	13	76375185	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	263142	76375185	38794693	2359	4383											
MYCBP2	23077	broad.mit.edu	37	chr13	77625305	77625305	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttgggacacatctatagcAaaagagaagagacagacaca	10	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77625305	G	G	77625305	1	3	4	0	1	0	0	0	0	0	0	0	10112	145	5	5		5	MYCBP2	13	77625305	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1250120	77625305	37544573	2360	4384											
MYCBP2	23077	broad.mit.edu	37	chr13	77632489	77632489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttcgtttttaacacccCcgcatggatggccacaagga	9	13	1	0	rs147594639		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77632489	A	A	77632489	3	1	4	1	0	0	0	0	1	0	0	0	10112	623	22	2	867	2	MYCBP2	13	77632489	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7184	77632489	37537389	2361	4385											
MYCBP2	23077	broad.mit.edu	37	chr13	77669711	77669711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgaggggtcttgacttgCattggttttctcctagattg	12	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77669711	A	A	77669711	3	1	4	1	0	0	0	0	1	0	0	0	10112	710	25	3	4159	3	MYCBP2	13	77669711	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	37222	77669711	37500167	2362	4386											
EDNRB	1910	broad.mit.edu	37	chr13	78493460	78493460	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttaaaatcccaaactaGtaagccaaaccgaagcccca	4	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78493460	T	T	78493460	1	4	4	0	1	0	0	0	0	0	0	0	4960	1044	36	3		3	EDNRB	13	78493460	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	823749	78493460	36676418	2363	4387											
SLITRK1	114798	broad.mit.edu	37	chr13	84453896	84453896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacgtgggcgagatcctagCgtacagctgagggcagatct	14	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84453896	A	A	84453896	3	1	4	1	0	0	0	0	1	0	0	0	14856	768	27	3	347	3	SLITRK1	13	84453896	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	5960436	84453896	30715982	2364	4388											
DCT	1638	broad.mit.edu	37	chr13	95121216	95121216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaggaatggatgttctgccGaatcactggtggtttcttcc	11	9	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95121216	A	A	95121216	3	1	4	1	0	0	0	0	1	0	0	0	4337	1057	37	4	1315	4	DCT	13	95121216	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	10667320	95121216	20048662	2365	4389											
SOX21	11166	broad.mit.edu	37	chr13	95364147	95364147	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcgatgaacggccgcttctCcgactctgtgagcagtttcc	11	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95364147	A	A	95364147	4	1	4	1	0	0	0	0	0	1	0	0	15064	864	30	3	677	3	SOX21	13	95364147	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	242931	95364147	19805731	2366	4390											
CLDN10	9071	broad.mit.edu	37	chr13	96212832	96212832	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaagacatactgataaAtggtaactgatgacatcatt	7	5	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96212832	C	C	96212832	1	2	4	0	1	0	0	0	0	0	0	0	3503	116	4	5		5	CLDN10	13	96212832	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	848685	96212832	18957046	2367	4391											
DOCK9	23348	broad.mit.edu	37	chr13	99520503	99520503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgatgaagacagcaagGctatgattcgcgttcttaga	10	8	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99520503	T	T	99520503	3	4	4	1	0	0	0	0	1	0	0	0	4734	1194	42	3	3311	3	DOCK9	13	99520503	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3307671	99520503	15649375	2368	4392											
CLYBL	171425	broad.mit.edu	37	chr13	100543590	100543590	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggggcctttactttccaaGggagtatgatcgacatgcca	12	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100543590	A	A	100543590	3	1	4	1	0	0	0	0	1	0	0	0	3605	1000	35	4	976	4	CLYBL	13	100543590	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1023087	100543590	14626288	2369	4393											
NALCN	259232	broad.mit.edu	37	chr13	101712383	101712383	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcctgccccaccgccacAcaaatcttattttcttctcc	3	19	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101712383	T	T	101712383	1	4	4	0	1	0	0	0	0	0	0	0	10242	174	6	5		5	NALCN	13	101712383	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1168793	101712383	13457495	2370	4394											
NALCN	259232	broad.mit.edu	37	chr13	101717915	101717915	+	Splice_Site	SNP	T	C	C													ggaacgtggggatcacccccTgcggggcagagcacaagaag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101717915	C	C	101717915	5	2	4	1	0	0	0	0	0	0	1	0	10242	1594	55	5	791	5	NALCN	13	101717915	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	5532	101717915	13451963	2371	4395	14	2									
NALCN	259232	broad.mit.edu	37	chr13	101717919	101717919	+	Intron	SNP	G	C	C													cgtggggatcaccccctgcgGggcagagcacaagaagtagc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101717919	C	C	101717919	1	2	4	0	1	0	0	0	0	0	0	0	10242	1247	43	4		4	NALCN	13	101717919	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4	101717919	13451959	2372	4396	14	2									
NALCN	259232	broad.mit.edu	37	chr13	101756829	101756829	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaacggaaaaacagcaggtCagtattttacctcctagttg	9	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101756829	A	A	101756829	1	1	4	0	1	0	0	0	0	0	0	0	10242	841	29	3		3	NALCN	13	101756829	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	38910	101756829	13413049	2373	4397											
NALCN	259232	broad.mit.edu	37	chr13	101763040	101763040	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatccatgtcttagtgacCtaaaacaaccacaggcactg	7	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101763040	A	A	101763040	5	1	4	1	0	0	0	0	0	0	1	0	10242	695	24	2	3022	2	NALCN	13	101763040	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	6211	101763040	13406838	2374	4398											
NALCN	259232	broad.mit.edu	37	chr13	101944674	101944674	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacatgaggaacacccaGccttcctgtgaggcggcctc	11	14	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101944674	C	C	101944674	2	2	4	1	0	0	0	0	0	0	0	1	10242	958	34	4		4	NALCN	13	101944674	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	181634	101944674	13225204	2375	4399											
NALCN	259232	broad.mit.edu	37	chr13	102029341	102029341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgctcggatcataatcaGtggccgtggaatccgcaaca	11	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102029341	T	T	102029341	3	4	4	1	0	0	0	0	1	0	0	0	10242	1020	36	3	4934	3	NALCN	13	102029341	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	84667	102029341	13140537	2376	4400											
ITGBL1	9358	broad.mit.edu	37	chr13	102344976	102344976	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcacctgctatcctccaggaGatcgccgggtgtatggcaag	13	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102344976	T	T	102344976	3	4	4	1	0	0	0	0	1	0	0	0	7972	942	33	3	1087	3	ITGBL1	13	102344976	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	315635	102344976	12824902	2377	4401											
FGF14	2259	broad.mit.edu	37	chr13	102375185	102375185	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgtgaggatctggctatGttgtcttactcttgttgact	10	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102375185	C	C	102375185	3	2	4	1	0	0	0	0	1	0	0	0	5900	1377	48	4	7	4	FGF14	13	102375185	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	30209	102375185	12794693	2378	4402											
C13orf39	196541	broad.mit.edu	37	chr13	103338686	103338686	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagttctttcacttcaggcaGatgtgctgtacattgtagtg	10	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103338686	A	A	103338686	2	1	4	1	0	0	0	0	0	0	0	1	1745	933	33	4		4	C13orf39	13	103338686	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	963501	103338686	11831192	2379	4403											
ERCC5	2073	broad.mit.edu	37	chr13	103506511	103506511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagcagccccgccaagGttccttcctttctctcggct	10	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103506511	T	T	103506511	1	4	4	0	1	0	0	0	0	0	0	0	5258	1276	44	3		3	ERCC5	13	103506511	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	167825	103506511	11663367	2380	4404											
ERCC5	2073	broad.mit.edu	37	chr13	103514736	103514736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgatgtgcagacgggaGggccaggagcagaagaaatg	19	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103514736	T	T	103514736	3	4	4	1	0	0	0	0	1	0	0	0	5258	1000	35	2	1267	2	ERCC5	13	103514736	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	8225	103514736	11655142	2381	4405											
SLC10A2	6555	broad.mit.edu	37	chr13	103703537	103703537	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgtggttctgtcttatggCacctctagcaaaggaataca	9	8	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103703537	G	G	103703537	1	3	4	0	1	0	0	0	0	0	0	0	14487	725	25	4		4	SLC10A2	13	103703537	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	188801	103703537	11466341	2382	4406											
LIG4	3981	broad.mit.edu	37	chr13	108863343	108863343	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attaagcaactcaatataaaGcttagcaagcatagtttctt	5	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108863343	C	C	108863343	3	2	4	1	0	0	0	0	1	0	0	0	8855	971	34	4	2465	4	LIG4	13	108863343	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	5159806	108863343	6306535	2383	4407											
MYO16	23026	broad.mit.edu	37	chr13	109699140	109699140	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatgtaacgtgaactgtaaGacctgaagacacttctttta	8	8	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109699140	T	T	109699140	1	4	4	0	1	0	0	0	0	0	0	0	10158	957	33	3		3	MYO16	13	109699140	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	835797	109699140	5470738	2384	4408											
COL4A1	1282	broad.mit.edu	37	chr13	110833579	110833579	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttcacaacctgcattttttCcatccaactaataacaagga	4	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110833579	T	T	110833579	1	4	4	0	1	0	0	0	0	0	0	0	3721	870	30	4		4	COL4A1	13	110833579	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1134439	110833579	4336299	2385	4409											
COL4A2	1284	broad.mit.edu	37	chr13	111121563	111121563	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtttatttggttatttaGgtgccaaaggcctccgagga	13	6	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111121563	T	T	111121563	5	4	4	1	0	0	0	0	0	0	1	0	3722	1014	35	2	2201	2	COL4A2	13	111121563	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	287984	111121563	4048315	2386	4410											
ATP11A	23250	broad.mit.edu	37	chr13	113470275	113470275	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagtcttttcctgaaaccGtgtccacatccccgtgtctt	7	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113470275	A	A	113470275	1	1	4	0	1	0	0	0	0	0	0	0	1123	1160	40	4		4	ATP11A	13	113470275	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2348712	113470275	1699603	2387	4411											
PROZ	8858	broad.mit.edu	37	chr13	113825800	113825800	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcggtgagcctgcgggtcctCcagggccggtctctccctcc	14	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113825800	A	A	113825800	1	1	4	0	1	0	0	0	0	0	0	0	12668	870	30	3		3	PROZ	13	113825800	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	355525	113825800	1344078	2388	4412											
GAS6	2621	broad.mit.edu	37	chr13	114551168	114551168	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaactgaggggaagtgacCggggcacgactgctgtgaga	19	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114551168	T	T	114551168	1	4	4	0	1	0	0	0	0	0	0	0	6311	667	23	4		4	GAS6	13	114551168	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	725368	114551168	618710	2389	4413											
RASA3	22821	broad.mit.edu	37	chr13	114766479	114766479	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtgaaaaaccacaccCcccactttctgcgttctgag	7	15	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114766479	T	T	114766479	1	4	4	0	1	0	0	0	0	0	0	0	13170	638	22	4		4	RASA3	13	114766479	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	215311	114766479	403399	2390	4414											
RASA3	22821	broad.mit.edu	37	chr13	114782839	114782839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtccctgggaaatggCgatggggacagcgtttgtct	17	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114782839	A	A	114782839	1	1	4	0	1	0	0	0	0	0	0	0	13170	783	27	3		3	RASA3	13	114782839	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	16360	114782839	387039	2391	4415											
RASA3	22821	broad.mit.edu	37	chr13	114784225	114784225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacacccacaggccacgGcgtggacaagcacctccaca	9	19	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114784225	T	T	114784225	1	4	4	0	1	0	0	0	0	0	0	0	13170	1218	42	3		3	RASA3	13	114784225	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1386	114784225	385653	2392	4416											
RASA3	22821	broad.mit.edu	37	chr13	114789879	114789879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaccgcggtgccaccaggCgggggtatatgcggacctag	17	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114789879	A	A	114789879	1	1	4	0	1	0	0	0	0	0	0	0	13170	783	27	3		3	RASA3	13	114789879	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5654	114789879	379999	2393	4417											
ZNF828	283489	broad.mit.edu	37	chr13	115089271	115089271	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttattgcagcagtattgAaagtttttaaagaatataac	6	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115089271	T	T	115089271	1	4	4	0	1	0	0	0	0	0	0	0	18310	261	9	5		5	ZNF828	13	115089271	5'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	299392	115089271	80607	2394	4418											
OR4Q3	441669	broad.mit.edu	37	chr14	20216346	20216346	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcagcctgatcttcgtgCcatgcgtattcatctatttg	9	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20216346	T	T	20216346	3	4	4	1	0	0	0	0	1	0	0	0	11175	739	26	4	762	4	OR4Q3	14	20216346	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08		20216346	87133194	2395	4419											
OR4M1	441670	broad.mit.edu	37	chr14	20248994	20248994	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacttcctttctgtgggccCaatgagttagacagttactt	9	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20248994	A	A	20248994	2	1	4	1	0	0	0	0	0	0	0	1	11169	581	21	2		2	OR4M1	14	20248994	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	32648	20248994	87100546	2396	4420											
OR4K2	390431	broad.mit.edu	37	chr14	20344996	20344996	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgttccagttggcttgtgtGgatacttatgttctgggcct	13	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20344996	C	C	20344996	2	2	4	1	0	0	0	0	0	0	0	1	11166	1335	47	4		4	OR4K2	14	20344996	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	96002	20344996	87004544	2397	4421											
OR4K1	79544	broad.mit.edu	37	chr14	20404275	20404275	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgtctatttcctgggcGgtgggcgttcttcattctgt	12	8	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20404275	A	A	20404275	2	1	4	1	0	0	0	0	0	0	0	1	11161	1103	39	4		4	OR4K1	14	20404275	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	59279	20404275	86945265	2398	4422											
OR11G2	390439	broad.mit.edu	37	chr14	20666364	20666364	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtggtttcactgttctaCggctcagtactggtcatgta	11	9	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20666364	A	A	20666364	4	1	4	1	0	0	0	0	0	1	0	0	11019	547	19	3	872	3	OR11G2	14	20666364	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	262089	20666364	86683176	2399	4423											
RNASE10	338879	broad.mit.edu	37	chr14	20979139	20979139	+	Frame_Shift_Del	DEL	C	-	-													gggaaaatgtcacaaaagctCccgaccttttgatttgacat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20979139	-	-	20979139	7	5	4	1	0	1	0	1	0	0	0	0	13511	855	30	0	511	0	RNASE10	14	20979139	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	312775	20979139	86370401	2400	4424											
OR6S1	341799	broad.mit.edu	37	chr14	21109500	21109500	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatccgcagacatgacagcCaacagtaagaactcggaggc	11	12	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21109500	T	T	21109500	2	4	4	1	0	0	0	0	0	0	0	1	11303	593	21	4		4	OR6S1	14	21109500	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	130361	21109500	86240040	2401	4425											
PSMB11	122706	broad.mit.edu	37	chr14	23512073	23512073	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccgtggcccacgccacCcaccgtgatgcctattcagg	11	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23512073	A	A	23512073	2	1	4	1	0	0	0	0	0	0	0	1	12782	610	22	2		2	PSMB11	14	23512073	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2402573	23512073	83837467	2402	4426											
MYH6	4624	broad.mit.edu	37	chr14	23862067	23862067	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcagcaccctgcactctAtctaccaggccagacacctc	8	18	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23862067	G	G	23862067	1	3	4	0	1	0	0	0	0	0	0	0	10132	464	16	5		5	MYH6	14	23862067	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	349994	23862067	83487473	2403	4427											
NRL	4901	broad.mit.edu	37	chr14	24551747	24551747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcccatcaacagggactGggccctgaccctgcagcagc	14	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24551747	T	T	24551747	3	4	4	1	0	0	0	0	1	0	0	0	10751	1348	47	2	410	2	NRL	14	24551747	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	689680	24551747	82797793	2404	4428											
CTSG	1511	broad.mit.edu	37	chr14	25043876	25043876	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagagggccaggtaggtGgtacctgcaataacatgatg	14	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25043876	A	A	25043876	1	1	4	0	1	0	0	0	0	0	0	0	4069	1363	47	4		4	CTSG	14	25043876	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	492129	25043876	82305664	2405	4429											
GZMH	2999	broad.mit.edu	37	chr14	25077440	25077440	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagggtccctgtagggggaActcaggaggtgagctggtgc	18	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25077440	T	T	25077440	1	4	4	0	1	0	0	0	0	0	0	0	6982	58	2	5		5	GZMH	14	25077440	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	33564	25077440	82272100	2406	4430											
GZMB	3002	broad.mit.edu	37	chr14	25101090	25101090	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtctttttaatctctgGgtcccccacgcacaactcaa	7	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25101090	C	C	25101090	3	2	4	1	0	0	0	0	1	0	0	0	6981	1232	43	4	177	4	GZMB	14	25101090	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	23650	25101090	82248450	2407	4431											
NUBPL	80224	broad.mit.edu	37	chr14	32068652	32068652	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatacttactgggtgtcagAcattatgctagatgcaatgt	9	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32068652	G	G	32068652	1	3	4	0	1	0	0	0	0	0	0	0	10812	290	10	5		5	NUBPL	14	32068652	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	6967562	32068652	75280888	2408	4432											
SRP54	6729	broad.mit.edu	37	chr14	35468640	35468640	+	Intron	SNP	T	C	C													aaaattatctctccaagaacTaactgaaaaacccagtagtg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35468640	C	C	35468640	1	2	4	0	1	0	0	0	0	0	0	0	15273	1537	53	5		5	SRP54	14	35468640	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	3399988	35468640	71880900	2409	4433	15	2									
SRP54	6729	broad.mit.edu	37	chr14	35468642	35468642	+	Intron	SNP	A	G	G													aattatctctccaagaactaActgaaaaacccagtagtgtg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35468642	G	G	35468642	1	3	4	0	1	0	0	0	0	0	0	0	15273	58	2	5		5	SRP54	14	35468642	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2	35468642	71880898	2410	4434	15	2									
FAM177A1	283635	broad.mit.edu	37	chr14	35522515	35522515	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaggctttgaaaatgtagAactgggagtcataggaaaaa	12	3	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35522515	G	G	35522515	3	3	4	1	0	0	0	0	1	0	0	0	5546	246	9	5	203	5	FAM177A1	14	35522515	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	53873	35522515	71827025	2411	4435											
FSCB	84075	broad.mit.edu	37	chr14	44975581	44975581	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccaatttcttcattgcTgtttgttgctggttgaaatt	8	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44975581	A	A	44975581	3	1	4	1	0	0	0	0	1	0	0	0	6126	1580	55	5	1871	5	FSCB	14	44975581	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	9453066	44975581	62373959	2412	4436											
FAM179B	23116	broad.mit.edu	37	chr14	45495057	45495057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctttatcagaagactcaGtagtagttgttggaaaaggt	12	4	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45495057	T	T	45495057	3	4	4	1	0	0	0	0	1	0	0	0	5551	1029	36	3	3340	3	FAM179B	14	45495057	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	519476	45495057	61854483	2413	4437											
FANCM	57697	broad.mit.edu	37	chr14	45644869	45644869	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagagctttatattgttaGaacagatgaccaattttata	7	4	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45644869	A	A	45644869	3	1	4	1	0	0	0	0	1	0	0	0	5728	942	33	4	2966	4	FANCM	14	45644869	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	149812	45644869	61704671	2414	4438											
SDCCAG1	9147	broad.mit.edu	37	chr14	50319518	50319518	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcctctactgcccggccGgactcgacgccacttctcct	8	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50319518	A	A	50319518	1	1	4	0	1	0	0	0	0	0	0	0	14070	1131	39	4		4	SDCCAG1	14	50319518	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	4674649	50319518	57030022	2415	4439											
C14orf183	196913	broad.mit.edu	37	chr14	50550444	50550444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgttcctggaggggtgtgGgaggagactggcatccattc	17	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50550444	A	A	50550444	2	1	4	1	0	0	0	0	0	0	0	1	1779	1219	43	4		4	C14orf183	14	50550444	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	230926	50550444	56799096	2416	4440											
DDHD1	80821	broad.mit.edu	37	chr14	53529766	53529766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcaactgttcatacagcCgaactggattccagccagtc	9	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53529766	A	A	53529766	3	1	4	1	0	0	0	0	1	0	0	0	4359	652	23	1	1069	1	DDHD1	14	53529766	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2979322	53529766	53819774	2417	4441											
DDHD1	80821	broad.mit.edu	37	chr14	53619576	53619576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgtcactgaggcaggggtCcagcgcgaggtggtggttgt	18	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53619576	A	A	53619576	3	1	4	1	0	0	0	0	1	0	0	0	4359	855	30	3	2538	3	DDHD1	14	53619576	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	89810	53619576	53729964	2418	4442											
BMP4	652	broad.mit.edu	37	chr14	54418875	54418875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtatcaaactagcatgGctcgcgcctcctagcaggac	10	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54418875	T	T	54418875	3	4	4	1	0	0	0	0	1	0	0	0	1468	1194	42	3	1168	3	BMP4	14	54418875	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	799299	54418875	52930665	2419	4443											
EXOC5	10640	broad.mit.edu	37	chr14	57688935	57688935	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaactgaatttgagacacaGagatgattataagcaaaaca	8	6	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57688935	C	C	57688935	1	2	4	0	1	0	0	0	0	0	0	0	5349	957	33	4		4	EXOC5	14	57688935	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3270060	57688935	49660605	2420	4444											
C14orf135	64430	broad.mit.edu	37	chr14	60591258	60591258	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacactgaaaataaagggaAagcacctctaatgttgcctg	8	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60591258	T	T	60591258	3	4	4	1	0	0	0	0	1	0	0	0	1758	14	1	5	1693	5	C14orf135	14	60591258	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2902323	60591258	46758282	2421	4445											
SLC38A6	145389	broad.mit.edu	37	chr14	61447792	61447792	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcgggtggatgggcgggtcTtctatgacatcatcactgtt	14	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61447792	A	A	61447792	1	1	4	0	1	0	0	0	0	0	0	0	14722	1624	56	5		5	SLC38A6	14	61447792	5'Flank	SNP	T	TCGA-05-4382-01A-01D-1265-08	856534	61447792	45901748	2422	4446											
SNAPC1	6617	broad.mit.edu	37	chr14	62233743	62233743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatacccaactgtgtcaacCaaaacaaaaggtaatactta	4	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62233743	A	A	62233743	3	1	4	1	0	0	0	0	1	0	0	0	14948	594	21	2	284	2	SNAPC1	14	62233743	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	785951	62233743	45115797	2423	4447											
SYNE2	23224	broad.mit.edu	37	chr14	64408830	64408830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacccatccattatccttgGcctaatttggacaattatcc	4	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64408830	T	T	64408830	3	4	4	1	0	0	0	0	1	0	0	0	15565	1203	42	3	395	3	SYNE2	14	64408830	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2175087	64408830	42940710	2424	4448											
SYNE2	23224	broad.mit.edu	37	chr14	64635688	64635688	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacaacagaaatagagaacAggtgagctgtctgggcctca	11	9	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64635688	C	C	64635688	2	2	4	1	0	0	0	0	0	0	0	1	15565	202	7	5		5	SYNE2	14	64635688	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	226858	64635688	42713852	2425	4449											
ESR2	2100	broad.mit.edu	37	chr14	64746747	64746747	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatccttcacacgaccagaCtccatagtgatatcccgatg	6	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64746747	T	T	64746747	3	4	4	1	0	0	0	0	1	0	0	0	5299	565	20	4	1219	4	ESR2	14	64746747	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	111059	64746747	42602793	2426	4450											
ZBTB25	7597	broad.mit.edu	37	chr14	64916151	64916159	+	3'UTR	DEL	CTTCCTTTA	-	-													ccatgctttgatatgaaatgCttcctttataggacggatac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64916159	-	-	64916151	6	5	4	0	1	1	0	1	0	0	0	0	17658	812	28	0		0	ZBTB25	14	64916151	3'UTR	DEL	CTTCCTTTA	TCGA-05-4382-01A-01D-1265-08	169404	64916151	42433389	2427	4451											
PLEKHG3	26030	broad.mit.edu	37	chr14	65209851	65209851	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggaccacctcgcctggGggccggccctccgcccggag	15	18	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65209851	T	T	65209851	2	4	4	1	0	0	0	0	0	0	0	1	12165	1219	43	2		2	PLEKHG3	14	65209851	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	293700	65209851	42139689	2428	4452											
MAX	4149	broad.mit.edu	37	chr14	65544194	65544194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattgagaacagcatgggCctagcccataggctgccctg	12	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65544194	A	A	65544194	1	1	4	0	1	0	0	0	0	0	0	0	9431	754	26	3		3	MAX	14	65544194	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	334343	65544194	41805346	2429	4453											
DCAF5	8816	broad.mit.edu	37	chr14	69585059	69585059	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatagtgcagagtcccagCactttggtaccgagggtgcc	13	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69585059	T	T	69585059	1	4	4	0	1	0	0	0	0	0	0	0	4306	725	25	4		4	DCAF5	14	69585059	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4040865	69585059	37764481	2430	4454											
GALNTL1	57452	broad.mit.edu	37	chr14	69806305	69806305	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaatactactatgaggccCggccctcggccatcgggaag	12	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69806305	T	T	69806305	3	4	4	1	0	0	0	0	1	0	0	0	6283	643	23	4	1198	4	GALNTL1	14	69806305	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	221246	69806305	37543235	2431	4455											
SMOC1	64093	broad.mit.edu	37	chr14	70460998	70460998	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaggagtggatgtgggagaGagctgaagcctcaatgcctc	17	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70460998	T	T	70460998	1	4	4	0	1	0	0	0	0	0	0	0	14915	957	33	3		3	SMOC1	14	70460998	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	654693	70460998	36888542	2432	4456											
PCNX	22990	broad.mit.edu	37	chr14	71489744	71489744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatgtttttaatatcacaGtgacactggtatctggagct	9	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71489744	T	T	71489744	1	4	4	0	1	0	0	0	0	0	0	0	11685	1044	36	3		3	PCNX	14	71489744	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1028746	71489744	35859796	2433	4457											
DPF3	8110	broad.mit.edu	37	chr14	73219915	73219915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccttgtcctgggcccaGcccagtcctcccacctttcc	6	21	0	0	rs34679400		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73219915	T	T	73219915	1	4	4	0	1	0	0	0	0	0	0	0	4758	986	34	3		3	DPF3	14	73219915	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1730171	73219915	34129625	2434	4458											
DPF3	8110	broad.mit.edu	37	chr14	73219972	73219972	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctccagagggcactgacCaggttttatctccagcagcc	10	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73219972	A	A	73219972	4	1	4	1	0	0	0	0	0	1	0	0	4758	608	21	2	800	2	DPF3	14	73219972	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	57	73219972	34129568	2435	4459											
ZFYVE1	53349	broad.mit.edu	37	chr14	73464512	73464512	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgtgacactgtaccccatCtctcaccagagcccagtagc	8	16	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73464512	G	G	73464512	1	3	4	0	1	0	0	0	0	0	0	0	17789	928	32	4		4	ZFYVE1	14	73464512	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	244540	73464512	33885028	2436	4460											
ACOT6	641372	broad.mit.edu	37	chr14	74086095	74086096	+	Missense_Mutation	DNP	CT	GA	GA													ttacaaggatatgattattcCtaaacttgtcgatgatctag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	74086096	GA	GA	74086095	3	3	4	1	0	0	0	0	1	0	0	0	154	681	24	4	182	4	ACOT6	14	74086095	Missense_Mutation	DNP	CT	TCGA-05-4382-01A-01D-1265-08	621583	74086095	33263445	2437	4461											
ALDH6A1	4329	broad.mit.edu	37	chr14	74551586	74551586	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaatgagactgggctgcgAgttggggatagggtttctct	18	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74551586	G	G	74551586	1	3	4	0	1	0	0	0	0	0	0	0	503	319	11	5		5	ALDH6A1	14	74551586	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	465491	74551586	32797954	2438	4462											
PROX2	283571	broad.mit.edu	37	chr14	75330424	75330424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgactccagggaaacggGgagtctctatccagctctgg	12	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75330424	T	T	75330424	2	4	4	1	0	0	0	0	0	0	0	1	12667	1219	43	2		2	PROX2	14	75330424	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	778838	75330424	32019116	2439	4463											
NRXN3	9369	broad.mit.edu	37	chr14	79117522	79117522	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccaggtgacaatctctgtGgatggcattcttaccacgac	9	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79117522	A	A	79117522	1	1	4	0	1	0	0	0	0	0	0	0	10762	1363	47	4		4	NRXN3	14	79117522	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	3787098	79117522	28232018	2440	4464											
NRXN3	9369	broad.mit.edu	37	chr14	79117635	79117635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgacttgcctggctcccCtgtcagcaacaacttcatgg	9	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79117635	A	A	79117635	3	1	4	1	0	0	0	0	1	0	0	0	10762	681	24	2	70	2	NRXN3	14	79117635	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	113	79117635	28231905	2441	4465											
NRXN3	9369	broad.mit.edu	37	chr14	79270162	79270162	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtcaagctcatggttaaCttaggtatcgtatgaagtac	10	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79270162	T	T	79270162	2	4	4	1	0	0	0	0	0	0	0	1	10762	564	20	4		4	NRXN3	14	79270162	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	152527	79270162	28079378	2442	4466											
DIO2	1734	broad.mit.edu	37	chr14	80677676	80677676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgccgccactctccgcgaGtggacttggagcggctcaac	13	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80677676	T	T	80677676	3	4	4	1	0	0	0	0	1	0	0	0	4565	1029	36	3	801	3	DIO2	14	80677676	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1407514	80677676	26671864	2443	4467											
C14orf143	90141	broad.mit.edu	37	chr14	90263537	90263537	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagagtcgagtctgctgaCattacaatctattgatctcc	8	9	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90263537	A	A	90263537	1	1	4	0	1	0	0	0	0	0	0	0	1761	493	17	3		3	C14orf143	14	90263537	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	9585861	90263537	17086003	2444	4468											
TDP1	55775	broad.mit.edu	37	chr14	90485646	90485646	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagtcagccctatctgtgtCcttgtctctgcagcgcaaat	9	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90485646	T	T	90485646	1	4	4	0	1	0	0	0	0	0	0	0	15850	870	30	4		4	TDP1	14	90485646	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	222109	90485646	16863894	2445	4469											
TRIP11	9321	broad.mit.edu	37	chr14	92480596	92480596	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtctgaacacttcttccacTgatgcactctgggcaagaat	8	11	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92480596	A	A	92480596	2	1	4	1	0	0	0	0	0	0	0	1	16680	1567	55	5		5	TRIP11	14	92480596	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	1994950	92480596	14868944	2446	4470											
SLC24A4	123041	broad.mit.edu	37	chr14	92909198	92909198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccggcagatgcatgccCtgaagcgtgggggatgagcc	18	11	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92909198	A	A	92909198	1	1	4	0	1	0	0	0	0	0	0	0	14582	696	24	2		2	SLC24A4	14	92909198	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	428602	92909198	14440342	2447	4471											
KIAA1409	57578	broad.mit.edu	37	chr14	94120419	94120419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagccgaaactctaagcCccagcacaactgtgggctgt	9	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120419	A	A	94120419	1	1	4	0	1	0	0	0	0	0	0	0	8300	638	22	2		2	KIAA1409	14	94120419	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1211221	94120419	13229121	2448	4472											
SERPINA6	866	broad.mit.edu	37	chr14	94772489	94772489	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtctgcaatgcccatttcCtccagcacatctccgaggtc	7	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94772489	T	T	94772489	2	4	4	1	0	0	0	0	0	0	0	1	14206	680	24	4		4	SERPINA6	14	94772489	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	652070	94772489	12577051	2449	4473											
SERPINA11	256394	broad.mit.edu	37	chr14	94915071	94915071	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgacagtggacagaggccAggatccctgttcccagtagc	13	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94915071	T	T	94915071	3	4	4	1	0	0	0	0	1	0	0	0	14201	188	7	5	1243	5	SERPINA11	14	94915071	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	142582	94915071	12434469	2450	4474											
CLMN	79789	broad.mit.edu	37	chr14	95663070	95663070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatccaagtcagtatgtcaCgctgcagtgtaaagtaggtg	11	7	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95663070	A	A	95663070	1	1	4	0	1	0	0	0	0	0	0	0	3574	551	19	3		3	CLMN	14	95663070	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	747999	95663070	11686470	2451	4475											
ATG2B	55102	broad.mit.edu	37	chr14	96756722	96756722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaacaaaaggacccaaCcatttcacaatggctctttt	4	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96756722	A	A	96756722	1	1	4	0	1	0	0	0	0	0	0	0	1098	522	18	3		3	ATG2B	14	96756722	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1093652	96756722	10592818	2452	4476											
ATG2B	55102	broad.mit.edu	37	chr14	96781496	96781496	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taacagctctcttacctgctCatgccagctaagcccagaag	7	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96781496	G	G	96781496	3	3	4	1	0	0	0	0	1	0	0	0	1098	835	29	4	2679	4	ATG2B	14	96781496	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	24774	96781496	10568044	2453	4477											
C14orf177	283598	broad.mit.edu	37	chr14	99183589	99183589	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctgttcaaaggaactgTagaacagatgtcacagatgt	11	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99183589	C	C	99183589	3	2	4	1	0	0	0	0	1	0	0	0	1773	1638	57	5	362	5	C14orf177	14	99183589	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2402093	99183589	8165951	2454	4478											
HHIPL1	84439	broad.mit.edu	37	chr14	100118789	100118790	+	Frame_Shift_Ins	INS	-	T	T													ctactgcttcccttacctgcINStggtcaacaagaacctcaac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100118790	T	T	100118789	7	5	4	1	0	1	1	0	0	0	0	0	7160	796	28	0	490	0	HHIPL1	14	100118789	Frame_Shift_Ins	INS	-	TCGA-05-4382-01A-01D-1265-08	935200	100118789	7230751	2455	4479											
WARS	7453	broad.mit.edu	37	chr14	100803386	100803387	+	Intron	INS	-	T	T													gcggctgtgggcccttggggINSttccctgctcaccttcctga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100803387	T	T	100803386	6	5	4	0	1	1	1	0	0	0	0	0	17376	1276	44	0		0	WARS	14	100803386	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	684597	100803386	6546154	2456	4480											
DLK1	8788	broad.mit.edu	37	chr14	101194828	101194828	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcctcagaggcagcttgtAggggccacgcagaagcctgg	15	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101194828	T	T	101194828	1	4	4	0	1	0	0	0	0	0	0	0	4604	435	15	5		5	DLK1	14	101194828	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	391442	101194828	6154712	2457	4481											
DYNC1H1	1778	broad.mit.edu	37	chr14	102446176	102446176	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgccgattcatccaatgatCacaaatgttgcaaaacagtg	7	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102446176	T	T	102446176	2	4	4	1	0	0	0	0	0	0	0	1	4881	816	29	4		4	DYNC1H1	14	102446176	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1251348	102446176	4903364	2458	4482											
ASPG	374569	broad.mit.edu	37	chr14	104561841	104561841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcttgcgaggggctggcCtgcctgagcatgcgcccctc	14	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104561841	A	A	104561841	1	1	4	0	1	0	0	0	0	0	0	0	1056	696	24	2		2	ASPG	14	104561841	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2115665	104561841	2787699	2459	4483											
PLD4	122618	broad.mit.edu	37	chr14	105396256	105396256	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagcttggggtcaggctcAccatgaagctagcacttagc	12	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105396256	T	T	105396256	1	4	4	0	1	0	0	0	0	0	0	0	12143	174	6	5		5	PLD4	14	105396256	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	834415	105396256	1953284	2460	4484											
MAGEL2	54551	broad.mit.edu	37	chr15	23890547	23890547	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgaggagggagcaaaggtCtccggtgtggcaggcaggtt	18	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23890547	A	A	23890547	3	1	4	1	0	0	0	0	1	0	0	0	9281	912	32	3	1410	3	MAGEL2	15	23890547	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08		23890547	78640845	2461	4485											
UBE3A	7337	broad.mit.edu	37	chr15	25585362	25585362	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgtaaatgaatgaacgaTttcccagaactccctaatga	6	9	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25585362	A	A	25585362	3	1	4	1	0	0	0	0	1	0	0	0	17005	1493	52	5	258	5	UBE3A	15	25585362	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1694815	25585362	76946030	2462	4486											
ATP10A	57194	broad.mit.edu	37	chr15	25940272	25940272	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacgtagcataggcactggtCtagcagggctgcacacgcct	12	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25940272	A	A	25940272	3	1	4	1	0	0	0	0	1	0	0	0	1120	913	32	3	1749	3	ATP10A	15	25940272	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	354910	25940272	76591120	2463	4487											
GABRB3	2562	broad.mit.edu	37	chr15	26806283	26806283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcaaggtctcccgaagGtgggtgttgatggttgtcat	16	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806283	T	T	26806283	3	4	4	1	0	0	0	0	1	0	0	0	6228	1252	44	3	553	3	GABRB3	15	26806283	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	866011	26806283	75725109	2464	4488											
GABRB3	2562	broad.mit.edu	37	chr15	26806345	26806345	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagaaaagaaacaaagtggtGagaggctgaaactttgccac	11	6	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806345	T	T	26806345	1	4	4	0	1	0	0	0	0	0	0	0	6228	1305	45	3		3	GABRB3	15	26806345	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	62	26806345	75725047	2465	4489											
HERC2	8924	broad.mit.edu	37	chr15	28389206	28389206	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaagacagatgtaactGtaatggtggcatttacctag	12	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28389206	A	A	28389206	1	1	4	0	1	0	0	0	0	0	0	0	7125	1392	48	4		4	HERC2	15	28389206	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1582861	28389206	74142186	2466	4490											
CHRFAM7A	89832	broad.mit.edu	37	chr15	30659662	30659662	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcggggtcgtggtggtggtActgcagcacgatcaccgtca	16	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30659662	G	G	30659662	3	3	4	1	0	0	0	0	1	0	0	0	3406	391	14	5	567	5	CHRFAM7A	15	30659662	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2270456	30659662	71871730	2467	4491											
TRPM1	4308	broad.mit.edu	37	chr15	31320594	31320594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaccagtagatagcacgcCatgagtgctggagtgagcca	14	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31320594	A	A	31320594	3	1	4	1	0	0	0	0	1	0	0	0	16710	594	21	2	1659	2	TRPM1	15	31320594	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	660932	31320594	71210798	2468	4492											
TRPM1	4308	broad.mit.edu	37	chr15	31329943	31329943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaacttgacaatgggcgCgttatagaattcacagatct	9	9	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31329943	A	A	31329943	3	1	4	1	0	0	0	0	1	0	0	0	16710	768	27	3	2371	3	TRPM1	15	31329943	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	9349	31329943	71201449	2469	4493											
TRPM1	4308	broad.mit.edu	37	chr15	31355409	31355409	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccacagggatgggaggctCttcttgcaggtattccaaga	12	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31355409	A	A	31355409	4	1	4	1	0	0	0	0	0	1	0	0	16710	922	32	3	4084	3	TRPM1	15	31355409	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	25466	31355409	71175983	2470	4494											
OTUD7A	161725	broad.mit.edu	37	chr15	31779707	31779707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccactcccagtccttgcCagggtccactgcaaagtgca	8	18	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31779707	A	A	31779707	3	1	4	1	0	0	0	0	1	0	0	0	11412	594	21	2	1579	2	OTUD7A	15	31779707	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	424298	31779707	70751685	2471	4495											
RYR3	6263	broad.mit.edu	37	chr15	33941313	33941313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctttgctggacaggatcCatcctgtgtctgggtcggat	12	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33941313	A	A	33941313	3	1	4	1	0	0	0	0	1	0	0	0	13881	594	21	2	4141	2	RYR3	15	33941313	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2161606	33941313	68590079	2472	4496											
RYR3	6263	broad.mit.edu	37	chr15	34105630	34105630	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcttctgccaccagaagatCagcctaatgtgcaccaaccg	8	14	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34105630	A	A	34105630	1	1	4	0	1	0	0	0	0	0	0	0	13881	841	29	3		3	RYR3	15	34105630	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	164317	34105630	68425762	2473	4497											
C15orf24	56851	broad.mit.edu	37	chr15	34376541	34376541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctggacggcctgactacctCcttttgccagccccactttt	7	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34376541	A	A	34376541	3	1	4	1	0	0	0	0	1	0	0	0	1799	854	30	3	9	3	C15orf24	15	34376541	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	270911	34376541	68154851	2474	4498											
C15orf41	84529	broad.mit.edu	37	chr15	36906401	36906401	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgacctgaatgagctgtaGaatgccccattcccaccctg	9	14	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36906401	C	C	36906401	1	2	4	0	1	0	0	0	0	0	0	0	1808	957	33	4		4	C15orf41	15	36906401	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2529860	36906401	65624991	2475	4499											
C15orf41	84529	broad.mit.edu	37	chr15	36910902	36910902	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcacttctgcccagcaacTcagtatgagtaccagttctc	7	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36910902	A	A	36910902	1	1	4	0	1	0	0	0	0	0	0	0	1808	1566	54	5		5	C15orf41	15	36910902	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4501	36910902	65620490	2476	4500											
TMCO5A	145942	broad.mit.edu	37	chr15	38229100	38229100	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtggaagatgaagagtggGagaaggagaaccgcaccacg	17	6	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38229100	A	A	38229100	3	1	4	1	0	0	0	0	1	0	0	0	16122	1175	41	4	199	4	TMCO5A	15	38229100	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1318198	38229100	64302292	2477	4501											
DISP2	85455	broad.mit.edu	37	chr15	40659862	40659862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcacgctcatggtgCtgctgggggtgctgggctca	14	12	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40659862	A	A	40659862	3	1	4	1	0	0	0	0	1	0	0	0	4580	796	28	3	1579	3	DISP2	15	40659862	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2430762	40659862	61871530	2478	4502											
C15orf23	90417	broad.mit.edu	37	chr15	40678594	40678594	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgggccacttctaagagtctCttacctgttaggtccaaaga	9	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40678594	A	A	40678594	2	1	4	1	0	0	0	0	0	0	0	1	1798	900	32	3		3	C15orf23	15	40678594	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	18732	40678594	61852798	2479	4503											
BAHD1	22893	broad.mit.edu	37	chr15	40751731	40751731	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcagctgtcgccgctgccGatgcctggcaaccccgccga	11	19	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40751731	T	T	40751731	2	4	4	1	0	0	0	0	0	0	0	1	1302	1045	37	3		3	BAHD1	15	40751731	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	73137	40751731	61779661	2480	4504											
TYRO3	7301	broad.mit.edu	37	chr15	41865772	41865772	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggggtttggttgccccctGatgaggccctgagccccagg	15	13	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41865772	T	T	41865772	1	4	4	0	1	0	0	0	0	0	0	0	16940	1305	45	3		3	TYRO3	15	41865772	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1114041	41865772	60665620	2481	4505											
TMEM87A	25963	broad.mit.edu	37	chr15	42529730	42529730	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaatccaaaactgaattctCaggagatctctccagtagca	6	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42529730	G	G	42529730	2	3	4	1	0	0	0	0	0	0	0	1	16333	813	29	4		4	TMEM87A	15	42529730	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	663958	42529730	60001662	2482	4506											
GANC	2595	broad.mit.edu	37	chr15	42644222	42644222	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcttttattgtcttgctAtttagatggtaaagatcagc	7	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42644222	G	G	42644222	1	3	4	0	1	0	0	0	0	0	0	0	6296	464	16	5		5	GANC	15	42644222	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	114492	42644222	59887170	2483	4507											
UBR1	197131	broad.mit.edu	37	chr15	43352417	43352417	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttaactgagctctaatcgCgtgttgactaaaagttgtaa	8	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43352417	G	G	43352417	1	3	4	0	1	0	0	0	0	0	0	0	17027	783	27	4		4	UBR1	15	43352417	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	708195	43352417	59178975	2484	4508											
TP53BP1	7158	broad.mit.edu	37	chr15	43749322	43749322	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttcaatctctgaagttttaGaacactcaactgtcaaagat	6	8	4	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43749322	A	A	43749322	3	1	4	1	0	0	0	0	1	0	0	0	16507	942	33	4	4517	4	TP53BP1	15	43749322	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	396905	43749322	58782070	2485	4509											
DUOX2	50506	broad.mit.edu	37	chr15	45386463	45386463	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcagctgaacaccccgatcTtgcgcacctgtcaggagatt	10	14	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45386463	A	A	45386463	3	1	4	1	0	0	0	0	1	0	0	0	4841	1609	56	5	118	5	DUOX2	15	45386463	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1637141	45386463	57144929	2486	4510											
DUOX2	50506	broad.mit.edu	37	chr15	45387703	45387703	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaggatggaggcaaaggGggtgaccccaatgccccctc	14	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45387703	A	A	45387703	3	1	4	1	0	0	0	0	1	0	0	0	4841	1232	43	4	491	4	DUOX2	15	45387703	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1240	45387703	57143689	2487	4511											
DUOX2	50506	broad.mit.edu	37	chr15	45400285	45400285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtagcggtcaccatcccGcagccgtacaaactggtcga	10	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45400285	T	T	45400285	2	4	4	1	0	0	0	0	0	0	0	1	4841	1086	38	3		3	DUOX2	15	45400285	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	12582	45400285	57131107	2488	4512											
SEMA6D	80031	broad.mit.edu	37	chr15	48056062	48056062	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggctgtgtattcccgcGtggcccgcatatgtaaaaac	12	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48056062	T	T	48056062	3	4	4	1	0	0	0	0	1	0	0	0	14155	1145	40	3	797	3	SEMA6D	15	48056062	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2655777	48056062	54475330	2489	4513											
SEMA6D	80031	broad.mit.edu	37	chr15	48060965	48060965	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaggcctcagcagggacCtcatctctaactgcgtggaa	12	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48060965	G	G	48060965	1	3	4	0	1	0	0	0	0	0	0	0	14155	696	24	4		4	SEMA6D	15	48060965	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4903	48060965	54470427	2490	4514											
HDC	3067	broad.mit.edu	37	chr15	50546735	50546735	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggcaactcacctggtcagAggcataggccacgagtcggg	15	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50546735	T	T	50546735	3	4	4	1	0	0	0	0	1	0	0	0	7082	304	11	5	1452	5	HDC	15	50546735	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2485770	50546735	51984657	2491	4515											
TRPM7	54822	broad.mit.edu	37	chr15	50854097	50854097	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggagaattaggaacctttTattttcttttcaagacggag	9	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50854097	C	C	50854097	1	2	4	0	1	0	0	0	0	0	0	0	16716	1769	61	5		5	TRPM7	15	50854097	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	307362	50854097	51677295	2492	4516											
SPPL2A	84888	broad.mit.edu	37	chr15	51031986	51031986	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattcttccttctttttcctCatttctctatcttcagttgt	2	11	6	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51031986	A	A	51031986	3	1	4	1	0	0	0	0	1	0	0	0	15206	826	29	3	978	3	SPPL2A	15	51031986	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	177889	51031986	51499406	2493	4517											
SCG3	29106	broad.mit.edu	37	chr15	52011538	52011538	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaatgcttctcagttaatGgtaatcactgtaatgggatt	8	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52011538	A	A	52011538	1	1	4	0	1	0	0	0	0	0	0	0	14004	1363	47	4		4	SCG3	15	52011538	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	979552	52011538	50519854	2494	4518											
LEO1	123169	broad.mit.edu	37	chr15	52246795	52246795	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcacaacacaagtacttTagaaaattatagtttaaatg	5	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52246795	C	C	52246795	1	2	4	0	1	0	0	0	0	0	0	0	8798	1769	61	5		5	LEO1	15	52246795	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	235257	52246795	50284597	2495	4519											
MAPK6	5597	broad.mit.edu	37	chr15	52351036	52351036	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcacgttaatgcctgtgtGtgaggcagaatctgtgtagg	13	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52351036	C	C	52351036	1	2	4	0	1	0	0	0	0	0	0	0	9373	1392	48	4		4	MAPK6	15	52351036	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	104241	52351036	50180356	2496	4520											
UNC13C	440279	broad.mit.edu	37	chr15	54306042	54306042	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatattaagcacttaggtcaTatgggtagcaaggcaagcct	10	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54306042	A	A	54306042	3	1	4	1	0	0	0	0	1	0	0	0	17112	1403	49	5	944	5	UNC13C	15	54306042	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1955006	54306042	48225350	2497	4521											
UNC13C	440279	broad.mit.edu	37	chr15	54793234	54793234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggcaatctgaaaaatgCtattgttttgtggtgttagt	11	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54793234	A	A	54793234	1	1	4	0	1	0	0	0	0	0	0	0	17112	812	28	3		3	UNC13C	15	54793234	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	487192	54793234	47738158	2498	4522											
UNC13C	440279	broad.mit.edu	37	chr15	54914548	54914548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctccaaagatgccgtgGgtcagatatctgttcatgtg	11	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54914548	T	T	54914548	3	4	4	1	0	0	0	0	1	0	0	0	17112	1232	43	2	6244	2	UNC13C	15	54914548	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	121314	54914548	47616844	2499	4523											
CCPG1	9236	broad.mit.edu	37	chr15	55783208	55783208	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctatataacatagtaagtcCtctaaacaaagtatgaagaa	5	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55783208	G	G	55783208	1	3	4	0	1	0	0	0	0	0	0	0	2968	696	24	4		4	CCPG1	15	55783208	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	868660	55783208	46748184	2500	4524											
PRTG	283659	broad.mit.edu	37	chr15	56032678	56032678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggactgctctcctcgcctgCcttccacctcactgatgtat	7	17	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56032678	A	A	56032678	3	1	4	1	0	0	0	0	1	0	0	0	12744	739	26	3	3229	3	PRTG	15	56032678	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	249470	56032678	46498714	2501	4525											
ALDH1A2	8854	broad.mit.edu	37	chr15	58257929	58257929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagttgacttacagtcagCatcagcaaaaataatattag	7	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58257929	A	A	58257929	3	1	4	1	0	0	0	0	1	0	0	0	491	710	25	3	685	3	ALDH1A2	15	58257929	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2225251	58257929	44273463	2502	4526											
MYO1E	4643	broad.mit.edu	37	chr15	59494607	59494607	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaagactttatgaaaggcCtggaaaaggagaaagagaat	11	3	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59494607	A	A	59494607	5	1	4	1	0	0	0	0	0	0	1	0	10166	695	24	2	1762	2	MYO1E	15	59494607	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	1236678	59494607	43036785	2503	4527											
VPS13C	54832	broad.mit.edu	37	chr15	62168014	62168014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccaagtacatctaaccCcaatacaaggacatacatct	4	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62168014	A	A	62168014	3	1	4	1	0	0	0	0	1	0	0	0	17318	623	22	2	1074	2	VPS13C	15	62168014	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2673407	62168014	40363378	2504	4528											
VPS13C	54832	broad.mit.edu	37	chr15	62320619	62320620	+	Splice_Site	DNP	CC	AA	AA													tgaactcccctgaatgtgtgCctgcatcccacatggcagca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	62320620	AA	AA	62320619	5	1	4	1	0	0	0	0	0	0	1	0	17318	753	26	3	11223	3	VPS13C	15	62320619	Splice_Site	DNP	CC	TCGA-05-4382-01A-01D-1265-08	152605	62320619	40210773	2505	4529											
TLN2	83660	broad.mit.edu	37	chr15	62989842	62989842	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtctcctcattgcactccAcatggctggtgttctctcag	10	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62989842	T	T	62989842	1	4	4	0	1	0	0	0	0	0	0	0	16071	174	6	5		5	TLN2	15	62989842	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	669223	62989842	39541550	2506	4530											
CA12	771	broad.mit.edu	37	chr15	63619260	63619260	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtccaggtgactgcggctCttcatgccacaaagctgcct	11	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63619260	A	A	63619260	1	1	4	0	1	0	0	0	0	0	0	0	2539	928	32	3		3	CA12	15	63619260	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	629418	63619260	38912132	2507	4531											
HERC1	8925	broad.mit.edu	37	chr15	63930837	63930837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatgggagacaccagggCacaaacacacaagcatttag	10	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63930837	A	A	63930837	1	1	4	0	1	0	0	0	0	0	0	0	7124	725	25	3		3	HERC1	15	63930837	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	311577	63930837	38600555	2508	4532											
RBPMS2	348093	broad.mit.edu	37	chr15	65041694	65041694	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatcacaaaaccaacaggcTagtaggaaaaagagagaaca	9	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65041694	A	A	65041694	5	1	4	1	0	0	0	0	0	0	1	0	13272	1536	53	5	442	5	RBPMS2	15	65041694	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	1110857	65041694	37489698	2509	4533											
PIF1	80119	broad.mit.edu	37	chr15	65112219	65112219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcagggcagagcccacCtgtgcagcaggggaggtggg	18	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65112219	A	A	65112219	1	1	4	0	1	0	0	0	0	0	0	0	11978	696	24	2		2	PIF1	15	65112219	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	70525	65112219	37419173	2510	4534											
RASL12	51285	broad.mit.edu	37	chr15	65351719	65351719	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaccctcaggtggacaggCtggtggtccacagtctcctc	12	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65351719	T	T	65351719	2	4	4	1	0	0	0	0	0	0	0	1	13191	796	28	4		4	RASL12	15	65351719	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	239500	65351719	37179673	2511	4535											
IGDCC4	57722	broad.mit.edu	37	chr15	65686622	65686622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtttttcaggttcaccCttccccaacccctactctgc	4	19	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65686622	A	A	65686622	1	1	4	0	1	0	0	0	0	0	0	0	7639	696	24	2		2	IGDCC4	15	65686622	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	334903	65686622	36844770	2512	4536											
IGDCC4	57722	broad.mit.edu	37	chr15	65686760	65686760	+	Frame_Shift_Del	DEL	A	-	-													cccactcaccttcctttcccAaaccgtattctatcttgtac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65686760	-	-	65686760	7	5	4	1	0	1	0	1	0	0	0	0	7639	131	5	0	2097	0	IGDCC4	15	65686760	Frame_Shift_Del	DEL	A	TCGA-05-4382-01A-01D-1265-08	138	65686760	36844632	2513	4537											
ITGA11	22801	broad.mit.edu	37	chr15	68643001	68643001	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggcatcgacaatgtccttCaaggcagcctcatcagtgac	10	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68643001	G	G	68643001	3	3	4	1	0	0	0	0	1	0	0	0	7944	825	29	4	2640	4	ITGA11	15	68643001	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2956241	68643001	33888391	2514	4538											
NOX5	79400	broad.mit.edu	37	chr15	69334910	69334910	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggacttggagggctgaGgcccagcagcaatccctcca	12	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69334910	A	A	69334910	1	1	4	0	1	0	0	0	0	0	0	0	10654	1015	35	4		4	NOX5	15	69334910	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	691909	69334910	33196482	2515	4539											
UACA	55075	broad.mit.edu	37	chr15	70980055	70980055	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtagaagttagaatgcatGagttgaaatgagaataaaca	10	2	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70980055	C	C	70980055	1	2	4	0	1	0	0	0	0	0	0	0	16950	1305	45	4		4	UACA	15	70980055	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1645145	70980055	31551337	2516	4540											
MYO9A	4649	broad.mit.edu	37	chr15	72186037	72186037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctctctttggcctggccCagctaacttcacaggtttcc	7	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72186037	A	A	72186037	3	1	4	1	0	0	0	0	1	0	0	0	10178	594	21	2	2589	2	MYO9A	15	72186037	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1205982	72186037	30345355	2517	4541											
GOLGA6B	55889	broad.mit.edu	37	chr15	72957470	72957470	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcccaccttctgattgctCtggcccctcaccccttccgg	6	19	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72957470	G	G	72957470	1	3	4	0	1	0	0	0	0	0	0	0	6622	928	32	4		4	GOLGA6B	15	72957470	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	771433	72957470	29573922	2518	4542											
HCN4	10021	broad.mit.edu	37	chr15	73659811	73659811	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagggcacccacaggatcatCgctgtggccccttacctgaa	10	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73659811	A	A	73659811	1	1	4	0	1	0	0	0	0	0	0	0	7065	899	31	3		3	HCN4	15	73659811	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	702341	73659811	28871581	2519	4543											
UBL7	84993	broad.mit.edu	37	chr15	74738690	74738690	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagcaaagctgctgatgctGagttccacagaacacggtgc	11	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74738690	C	C	74738690	1	2	4	0	1	0	0	0	0	0	0	0	17016	1305	45	4		4	UBL7	15	74738690	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1078879	74738690	27792702	2520	4544											
LMAN1L	79748	broad.mit.edu	37	chr15	75116016	75116016	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaggaggagcttcgggGcccggcggtgaggggaaagt	20	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75116016	A	A	75116016	3	1	4	1	0	0	0	0	1	0	0	0	8911	1203	42	4	1362	4	LMAN1L	15	75116016	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	377326	75116016	27415376	2521	4545											
SCAMP2	10066	broad.mit.edu	37	chr15	75146479	75146479	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctacatggaacaaatcaaAagacagaattgagtgggact	10	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75146479	G	G	75146479	1	3	4	0	1	0	0	0	0	0	0	0	13983	29	1	5		5	SCAMP2	15	75146479	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	30463	75146479	27384913	2522	4546											
MAN2C1	4123	broad.mit.edu	37	chr15	75648219	75648219	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaggagtccccagagccttCtacaaacaaaaccccagccc	6	16	1	1	rs1128987		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75648219	T	T	75648219	1	4	4	0	1	0	0	0	0	0	0	0	9310	928	32	4		4	MAN2C1	15	75648219	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	501740	75648219	26883173	2523	4547											
NRG4	145957	broad.mit.edu	37	chr15	76254245	76254245	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcttcaaacaggttacTtttagtttggatgctggagc	10	6	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76254245	C	C	76254245	3	2	4	1	0	0	0	0	1	0	0	0	10745	1609	56	5	184	5	NRG4	15	76254245	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	606026	76254245	26277147	2524	4548											
ETFA	2108	broad.mit.edu	37	chr15	76523756	76523756	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcctgaaataaaagaggtCacattattaatatgtattta	6	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76523756	A	A	76523756	1	1	4	0	1	0	0	0	0	0	0	0	5311	841	29	3		3	ETFA	15	76523756	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	269511	76523756	26007636	2525	4549											
LINGO1	84894	broad.mit.edu	37	chr15	77907381	77907381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggagaggttgaggaagcGgagatagactaggtggcgga	20	3	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77907381	T	T	77907381	3	4	4	1	0	0	0	0	1	0	0	0	8887	1116	39	1	998	1	LINGO1	15	77907381	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1383625	77907381	24624011	2526	4550											
WDR61	80349	broad.mit.edu	37	chr15	78584957	78584957	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctacaagtaaaactcttaCcaggtcctgcatctatggac	6	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78584957	A	A	78584957	5	1	4	1	0	0	0	0	0	0	1	0	17439	521	18	3	625	3	WDR61	15	78584957	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	677576	78584957	23946435	2527	4551											
WDR61	80349	broad.mit.edu	37	chr15	78587947	78587947	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttcttgactacacatcCagaaaacctactggacttga	6	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78587947	A	A	78587947	1	1	4	0	1	0	0	0	0	0	0	0	17439	609	21	2		2	WDR61	15	78587947	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2990	78587947	23943445	2528	4552											
IREB2	3658	broad.mit.edu	37	chr15	78764260	78764260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatggtttagggattctgGggtggggtaagtaaatgact	16	2	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78764260	T	T	78764260	3	4	4	1	0	0	0	0	1	0	0	0	7896	1232	43	2	903	2	IREB2	15	78764260	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	176313	78764260	23767132	2529	4553											
PSMA4	5685	broad.mit.edu	37	chr15	78836662	78836662	+	Intron	DEL	T	-	-													gaaattagttttgatgtttcTtttttttttttttgagacag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78836662	-	-	78836662	6	5	4	0	1	1	0	1	0	0	0	0	12775	1624	56	0		0	PSMA4	15	78836662	Intron	DEL	T	TCGA-05-4382-01A-01D-1265-08	72402	78836662	23694730	2530	4554											
CHRNB4	1143	broad.mit.edu	37	chr15	78917435	78917435	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagcaaagtgcccaccCggccactcacatcctctcac	7	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78917435	A	A	78917435	1	1	4	0	1	0	0	0	0	0	0	0	3424	667	23	1		1	CHRNB4	15	78917435	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	80773	78917435	23613957	2531	4555											
EFTUD1	79631	broad.mit.edu	37	chr15	82422983	82422983	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgagctccccaatttataTagtcttagctaatgaaaaaa	5	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82422983	A	A	82422983	1	1	4	0	1	0	0	0	0	0	0	0	5000	1421	49	5		5	EFTUD1	15	82422983	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	3505548	82422983	20108409	2532	4556											
CPEB1	64506	broad.mit.edu	37	chr15	83224530	83224530	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgcaaccaagcctcctctAgacagttcacaagtgtgtga	8	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83224530	G	G	83224530	1	3	4	0	1	0	0	0	0	0	0	0	3832	435	15	5		5	CPEB1	15	83224530	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	801547	83224530	19306862	2533	4557											
BNC1	646	broad.mit.edu	37	chr15	83931751	83931751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcattacagccctccactGtgcatgtgtgcatttctttg	8	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83931751	T	T	83931751	3	4	4	1	0	0	0	0	1	0	0	0	1480	1377	48	3	740	3	BNC1	15	83931751	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	707221	83931751	18599641	2534	4558											
SH3GL3	6457	broad.mit.edu	37	chr15	84286744	84286744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaaggcctgctgttaaGggtctctctgagcttttcca	11	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84286744	T	T	84286744	1	4	4	0	1	0	0	0	0	0	0	0	14365	1015	35	2		2	SH3GL3	15	84286744	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	354993	84286744	18244648	2535	4559											
AGBL1	123624	broad.mit.edu	37	chr15	86940755	86940755	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcatacccatgctcaacCcagatggtgtcatcaacggc	8	13	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86940755	T	T	86940755	3	4	4	1	0	0	0	0	1	0	0	0	375	623	22	4	2457	4	AGBL1	15	86940755	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2654011	86940755	15590637	2536	4560											
AGBL1	123624	broad.mit.edu	37	chr15	87531247	87531247	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccaatttcctgccaaagcAtatttggtttgcttaccact	5	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87531247	T	T	87531247	3	4	4	1	0	0	0	0	1	0	0	0	375	217	8	5	3199	5	AGBL1	15	87531247	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	590492	87531247	15000145	2537	4561											
NTRK3	4916	broad.mit.edu	37	chr15	88679078	88679078	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggcccctctccagcctccTatgccagttgcccctcacac	6	20	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88679078	A	A	88679078	1	1	4	0	1	0	0	0	0	0	0	0	10803	1537	53	5		5	NTRK3	15	88679078	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	1147831	88679078	13852314	2538	4562											
ACAN	176	broad.mit.edu	37	chr15	89382423	89382423	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacttcagctgcttcctctGtgacatggagctggtaatat	9	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89382423	C	C	89382423	1	2	4	0	1	0	0	0	0	0	0	0	117	1392	48	4		4	ACAN	15	89382423	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	703345	89382423	13148969	2539	4563											
ANPEP	290	broad.mit.edu	37	chr15	90347593	90347593	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggtaggtcaccagtcccCagttctccatggcgccggcg	12	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90347593	T	T	90347593	4	4	4	1	0	0	0	0	0	1	0	0	710	595	21	4	1897	4	ANPEP	15	90347593	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	965170	90347593	12183799	2540	4564											
ANPEP	290	broad.mit.edu	37	chr15	90349243	90349243	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcgctgcggtagaagcccGccaggtcatctgccaactcc	10	16	2	1	rs148796695		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90349243	A	A	90349243	3	1	4	1	0	0	0	0	1	0	0	0	710	1087	38	4	2411	4	ANPEP	15	90349243	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1650	90349243	12182149	2541	4565											
FURIN	5045	broad.mit.edu	37	chr15	91423004	91423004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatggtgtgggccggaaaGgtgagggcaggctggcccgg	20	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91423004	T	T	91423004	3	4	4	1	0	0	0	0	1	0	0	0	6159	1014	35	2	1296	2	FURIN	15	91423004	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1073761	91423004	11108388	2542	4566											
VPS33B	26276	broad.mit.edu	37	chr15	91549109	91549109	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catccatgagaaaggacaggGaacctgtcatagtattagaa	10	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91549109	C	C	91549109	1	2	4	0	1	0	0	0	0	0	0	0	17329	1189	41	4		4	VPS33B	15	91549109	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	126105	91549109	10982283	2543	4567											
ST8SIA2	8128	broad.mit.edu	37	chr15	92981651	92981651	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaagggaaccctgaagcctgGagatattattcattacatct	8	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92981651	C	C	92981651	3	2	4	1	0	0	0	0	1	0	0	0	15350	1174	41	4	373	4	ST8SIA2	15	92981651	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1432542	92981651	9549741	2544	4568											
LRRC28	123355	broad.mit.edu	37	chr15	99798493	99798493	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacgatacccagtacatctGggagtctgaatccaatgaat	8	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99798493	A	A	99798493	1	1	4	0	1	0	0	0	0	0	0	0	9069	1363	47	4		4	LRRC28	15	99798493	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	6816842	99798493	2732899	2545	4569											
OR4F6	390648	broad.mit.edu	37	chr15	102345915	102345915	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagagttgtcacagccgaCagaggcaatggatgaagcca	13	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102345915	T	T	102345915	1	4	4	0	1	0	0	0	0	0	0	0	11160	493	17	4		4	OR4F6	15	102345915	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	2547422	102345915	185477	2546	4570											
OR4F15	390649	broad.mit.edu	37	chr15	102358680	102358680	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatctcctttcggggatgTattactcagatcttctttag	8	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102358680	A	A	102358680	4	1	4	1	0	0	0	0	0	1	0	0	11155	1644	57	5	293	5	OR4F15	15	102358680	Nonsense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	12765	102358680	172712	2547	4571											
PDIA2	64714	broad.mit.edu	37	chr16	335744	335744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaaggggaaccctgacCtcatcccaccagcttggcag	11	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	335744	A	A	335744	1	1	4	0	1	0	0	0	0	0	0	0	11762	696	24	2		2	PDIA2	16	335744	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		335744	90019009	2548	4572											
TMEM8A	58986	broad.mit.edu	37	chr16	424493	424493	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcagagaagccccttcctCacccaggagcaagcagggta	11	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	424493	A	A	424493	1	1	4	0	1	0	0	0	0	0	0	0	16337	841	29	3		3	TMEM8A	16	424493	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	88749	424493	89930260	2549	4573											
RAB11FIP3	9727	broad.mit.edu	37	chr16	511444	511444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggatcccagtgggctcgGcgtgatcagctttgaagact	13	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	511444	T	T	511444	3	4	4	1	0	0	0	0	1	0	0	0	13003	1203	42	3	761	3	RAB11FIP3	16	511444	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	86951	511444	89843309	2550	4574											
HN1L	90861	broad.mit.edu	37	chr16	1748976	1748976	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaacccaccgggaggcAaatccagcatctccttctac	7	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1748976	T	T	1748976	4	4	4	1	0	0	0	0	0	1	0	0	7317	131	5	5	568	5	HN1L	16	1748976	Nonsense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1237532	1748976	88605777	2551	4575											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1812586	1812586	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctggggggactgaagtgCgctgggtgcttcctggcggg	19	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1812586	T	T	1812586	1	4	4	0	1	0	0	0	0	0	0	0	9378	783	27	4		4	MAPK8IP3	16	1812586	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	63610	1812586	88542167	2552	4576											
PKD1	5310	broad.mit.edu	37	chr16	2168792	2168792	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgctgctcctccgcccaTcgcggcagccacgccaggcc	10	21	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2168792	A	A	2168792	2	1	4	1	0	0	0	0	0	0	0	1	12058	1422	50	5		5	PKD1	16	2168792	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	356206	2168792	88185961	2553	4577											
SRRM2	23524	broad.mit.edu	37	chr16	2812973	2812973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaacgccacccagacgcaGtcgctccagttcttctccgc	8	17	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2812973	T	T	2812973	3	4	4	1	0	0	0	0	1	0	0	0	15287	1029	36	3	2482	3	SRRM2	16	2812973	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	644181	2812973	87541780	2554	4578											
ZNF500	26048	broad.mit.edu	37	chr16	4815411	4815411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtggacacccattagCcaaggctgagaaatcttttg	11	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4815411	A	A	4815411	1	1	4	0	1	0	0	0	0	0	0	0	18075	754	26	3		3	ZNF500	16	4815411	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2002438	4815411	85539342	2555	4579											
PPL	5493	broad.mit.edu	37	chr16	4933740	4933740	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacggccacggagcccaggCgcttctgcagctcgtcgatc	13	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4933740	T	T	4933740	3	4	4	1	0	0	0	0	1	0	0	0	12435	768	27	4	358	4	PPL	16	4933740	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	118329	4933740	85421013	2556	4580											
A2BP1	54715	broad.mit.edu	37	chr16	7382881	7382881	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcgttgatgagtgcttggCtcctgacagaagggatttgg	16	7	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7382881	T	T	7382881	1	4	4	0	1	0	0	0	0	0	0	0	3	812	28	4		4	A2BP1	16	7382881	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2449141	7382881	82971872	2557	4581											
A2BP1	54715	broad.mit.edu	37	chr16	7680787	7680787	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctccctctgccccaccctCtcttgtggctctctctgagg	7	20	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7680787	A	A	7680787	1	1	4	0	1	0	0	0	0	0	0	0	3	928	32	3		3	A2BP1	16	7680787	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	297906	7680787	82673966	2558	4582											
USP7	7874	broad.mit.edu	37	chr16	9004656	9004656	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccccatcgagctgttctacTgccacataatccacaaatga	5	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9004656	A	A	9004656	2	1	4	1	0	0	0	0	0	0	0	1	17215	1567	55	5		5	USP7	16	9004656	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	1323869	9004656	81350097	2559	4583											
GRIN2A	2903	broad.mit.edu	37	chr16	9857738	9857738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggcctgaataggtgggCatgttggaaaggcagcttct	15	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9857738	A	A	9857738	3	1	4	1	0	0	0	0	1	0	0	0	6845	710	25	3	735	3	GRIN2A	16	9857738	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	853082	9857738	80497015	2560	4584											
GRIN2A	2903	broad.mit.edu	37	chr16	9857801	9857801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcgctcgctggtctcactGtgcggggaacccttgtcttt	11	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9857801	T	T	9857801	3	4	4	1	0	0	0	0	1	0	0	0	6845	1368	48	3	798	3	GRIN2A	16	9857801	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	63	9857801	80496952	2561	4585											
GRIN2A	2903	broad.mit.edu	37	chr16	9858253	9858253	+	Frame_Shift_Del	DEL	T	-	-													catctcttctggaagataccTagggctctttagggagtggg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9858253	-	-	9858253	7	5	4	1	0	1	0	1	0	0	0	0	6845	1521	53	0	1250	0	GRIN2A	16	9858253	Frame_Shift_Del	DEL	T	TCGA-05-4382-01A-01D-1265-08	452	9858253	80496500	2562	4586											
ATF7IP2	80063	broad.mit.edu	37	chr16	10574812	10574812	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaccccattggcacaaaaTgcagtccaggtactgaatca	7	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10574812	C	C	10574812	2	2	4	1	0	0	0	0	0	0	0	1	1092	1461	51	5		5	ATF7IP2	16	10574812	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	716559	10574812	79779941	2563	4587											
CPPED1	55313	broad.mit.edu	37	chr16	12897540	12897540	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgcagccccagagtcccctCcccgggtgaggggcgggcag	16	17	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12897540	A	A	12897540	1	1	4	0	1	0	0	0	0	0	0	0	3854	870	30	3		3	CPPED1	16	12897540	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2322728	12897540	77457213	2564	4588											
NOMO1	23420	broad.mit.edu	37	chr16	14951535	14951535	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcttatcgtgtggatttgGaagcgccagtaaatatgctg	12	6	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14951535	T	T	14951535	1	4	4	0	1	0	0	0	0	0	0	0	10626	1189	41	3		3	NOMO1	16	14951535	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2053995	14951535	75403218	2565	4589											
PDXDC1	23042	broad.mit.edu	37	chr16	15126927	15126927	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcatcccttagcgggctaGcgcctctcgggctgggttcc	13	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15126927	A	A	15126927	1	1	4	0	1	0	0	0	0	0	0	0	11790	986	34	4		4	PDXDC1	16	15126927	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	175392	15126927	75227826	2566	4590											
PDXDC1	23042	broad.mit.edu	37	chr16	15224349	15224349	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtggacgtgagcccaggctCcgccaggttggatatcggag	16	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15224349	A	A	15224349	1	1	4	0	1	0	0	0	0	0	0	0	11790	870	30	3		3	PDXDC1	16	15224349	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	97422	15224349	75130404	2567	4591											
NDE1	54820	broad.mit.edu	37	chr16	15790760	15790760	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctggcggggagaacccGcctgccccaggcaagagaca	14	15	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15790760	T	T	15790760	2	4	4	1	0	0	0	0	0	0	0	1	10338	1102	38	3		3	NDE1	16	15790760	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	566411	15790760	74563993	2568	4592											
MYH11	4629	broad.mit.edu	37	chr16	15892574	15892574	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaagaaaaaagagccaTgaattaaaatgagctctgag	10	4	1	6			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15892574	C	C	15892574	1	2	4	0	1	0	0	0	0	0	0	0	10125	1479	51	5		5	MYH11	16	15892574	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	101814	15892574	74462179	2569	4593											
TMC5	79838	broad.mit.edu	37	chr16	19474774	19474774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggactcagggggaagatgAaccaaaaatcagagcaattt	13	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19474774	T	T	19474774	1	4	4	0	1	0	0	0	0	0	0	0	16111	261	9	5		5	TMC5	16	19474774	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	3582200	19474774	70879979	2570	4594											
GPR139	124274	broad.mit.edu	37	chr16	20043324	20043324	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgttggcaatgtcggacatGatgtgtaccagccagcggtt	13	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043324	T	T	20043324	2	4	4	1	0	0	0	0	0	0	0	1	6713	1280	45	3		3	GPR139	16	20043324	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	568550	20043324	70311429	2571	4595											
UMOD	7369	broad.mit.edu	37	chr16	20352561	20352561	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctcagtggacagtgtcaCggaggagccttggtagggct	16	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20352561	T	T	20352561	3	4	4	1	0	0	0	0	1	0	0	0	17105	536	19	4	513	4	UMOD	16	20352561	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	309237	20352561	70002192	2572	4596											
UMOD	7369	broad.mit.edu	37	chr16	20362003	20362003	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtcagtggctgcagttgtGatgaaccaagaggccaccac	13	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20362003	A	A	20362003	2	1	4	1	0	0	0	0	0	0	0	1	17105	1280	45	4		4	UMOD	16	20362003	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	9442	20362003	69992750	2573	4597											
PDILT	204474	broad.mit.edu	37	chr16	20386220	20386220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcgttatgactccaaacGttagctctggaaagtctttg	8	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20386220	T	T	20386220	3	4	4	1	0	0	0	0	1	0	0	0	11768	1145	40	3	1181	3	PDILT	16	20386220	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	24217	20386220	69968533	2574	4598											
ACSM5	54988	broad.mit.edu	37	chr16	20429668	20429668	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagtgtccacagggtcttGaagatggagcaaaaataaac	11	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20429668	T	T	20429668	1	4	4	0	1	0	0	0	0	0	0	0	187	1305	45	3		3	ACSM5	16	20429668	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	43448	20429668	69925085	2575	4599											
ACSM5	54988	broad.mit.edu	37	chr16	20448431	20448431	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttacatcacaggggacCgagctcgcatggacaaggat	11	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20448431	A	A	20448431	2	1	4	1	0	0	0	0	0	0	0	1	187	644	23	1		1	ACSM5	16	20448431	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	18763	20448431	69906322	2576	4600											
ACSM2A	123876	broad.mit.edu	37	chr16	20471598	20471598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgtgttggatcactgGgctgacatggagaaggtaat	15	4	1	3	rs147663018		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20471598	T	T	20471598	3	4	4	1	0	0	0	0	1	0	0	0	183	1241	43	2	164	2	ACSM2A	16	20471598	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	23167	20471598	69883155	2577	4601											
ACSM2A	123876	broad.mit.edu	37	chr16	20498058	20498058	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctttcttttccctttgGgcccttggccttcctatgat	6	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20498058	T	T	20498058	1	4	4	0	1	0	0	0	0	0	0	0	183	1247	43	2		2	ACSM2A	16	20498058	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	26460	20498058	69856695	2578	4602											
ACSM2B	348158	broad.mit.edu	37	chr16	20559428	20559428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggatgtccagtcctgtctGggccctccagttctccagag	11	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20559428	T	T	20559428	3	4	4	1	0	0	0	0	1	0	0	0	184	1357	47	2	707	2	ACSM2B	16	20559428	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	61370	20559428	69795325	2579	4603											
ACSM2B	348158	broad.mit.edu	37	chr16	20563433	20563433	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaacctcgggctcactcTgaataactgctgcaaactgg	9	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20563433	A	A	20563433	1	1	4	0	1	0	0	0	0	0	0	0	184	1595	55	5		5	ACSM2B	16	20563433	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4005	20563433	69791320	2580	4604											
ACSM1	116285	broad.mit.edu	37	chr16	20681341	20681341	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagtggcctcagctgtgtGatcatggctgatgtgatgaa	14	7	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20681341	T	T	20681341	1	4	4	0	1	0	0	0	0	0	0	0	182	1305	45	3		3	ACSM1	16	20681341	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	117908	20681341	69673412	2581	4605											
LOC81691	81691	broad.mit.edu	37	chr16	20833145	20833145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgatcccatcattcaaaaGtatggctctaagaaagtggg	10	7	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20833145	T	T	20833145	3	4	4	1	0	0	0	0	1	0	0	0	8977	1020	36	3	555	3	LOC81691	16	20833145	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	151804	20833145	69521608	2582	4606											
DNAH3	55567	broad.mit.edu	37	chr16	21038383	21038383	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggagaggcttgctcgaggtCggcgggctcgaagatcaggc	18	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21038383	T	T	21038383	3	4	4	1	0	0	0	0	1	0	0	0	4643	884	31	4	6943	4	DNAH3	16	21038383	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	205238	21038383	69316370	2583	4607											
DNAH3	55567	broad.mit.edu	37	chr16	21045250	21045250	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatggagccagccaactgAgcgaggagttctgtcctccc	11	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21045250	G	G	21045250	1	3	4	0	1	0	0	0	0	0	0	0	4643	319	11	5		5	DNAH3	16	21045250	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	6867	21045250	69309503	2584	4608											
ZP2	7783	broad.mit.edu	37	chr16	21210996	21210996	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggaagtagacctggagacAgaagagagttacatggaatc	14	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21210996	C	C	21210996	1	2	4	0	1	0	0	0	0	0	0	0	18345	203	7	5		5	ZP2	16	21210996	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	165746	21210996	69143757	2585	4609											
ZP2	7783	broad.mit.edu	37	chr16	21217083	21217083	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccaagccagagaagaccCgtggcaaggaaaactggaag	13	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21217083	T	T	21217083	3	4	4	1	0	0	0	0	1	0	0	0	18345	652	23	4	1796	4	ZP2	16	21217083	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	6087	21217083	69137670	2586	4610											
OTOA	146183	broad.mit.edu	37	chr16	21690437	21690437	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttctaagaatttcaaacaGaatgtagctgtgatctctct	6	8	5	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21690437	T	T	21690437	1	4	4	0	1	0	0	0	0	0	0	0	11396	957	33	3		3	OTOA	16	21690437	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	473354	21690437	68664316	2587	4611											
OTOA	146183	broad.mit.edu	37	chr16	21726422	21726422	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgagaagtgccgtctcCcagtatgtatccgacttgtc	10	12	1	1	rs151328702		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21726422	A	A	21726422	2	1	4	1	0	0	0	0	0	0	0	1	11396	610	22	2		2	OTOA	16	21726422	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	35985	21726422	68628331	2588	4612											
OTOA	146183	broad.mit.edu	37	chr16	21737753	21737753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatttaaagaatgtctttGggatgagctcttgggcaggc	12	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21737753	T	T	21737753	1	4	4	0	1	0	0	0	0	0	0	0	11396	1363	47	2		2	OTOA	16	21737753	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	11331	21737753	68617000	2589	4613											
OTOA	146183	broad.mit.edu	37	chr16	21747674	21747675	+	Frame_Shift_Ins	INS	-	A	A													tctttcagtctgttcggaacINSagcagtgataagatccccag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21747675	A	A	21747674	7	5	4	1	0	1	1	0	0	0	0	0	11396	477	17	0	2522	0	OTOA	16	21747674	Frame_Shift_Ins	INS	-	TCGA-05-4382-01A-01D-1265-08	9921	21747674	68607079	2590	4614											
SCNN1G	6340	broad.mit.edu	37	chr16	23197833	23197833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcttctccttctatactGtctcagtttccatcaaagtc	4	13	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23197833	T	T	23197833	3	4	4	1	0	0	0	0	1	0	0	0	14043	1377	48	3	243	3	SCNN1G	16	23197833	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1450159	23197833	67156920	2591	4615											
GGA2	23062	broad.mit.edu	37	chr16	23494216	23494216	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcttgcacctgggctgcTagctacacccaaggaaagaa	10	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23494216	C	C	23494216	1	2	4	0	1	0	0	0	0	0	0	0	6417	1537	53	5		5	GGA2	16	23494216	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	296383	23494216	66860537	2592	4616											
PRKCB	5579	broad.mit.edu	37	chr16	23999801	23999802	+	Intron	DNP	CC	TT	TT													tccgctttccttcttcccttCctcccaccctgattttctct							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	23999802	TT	TT	23999801	1	4	4	0	1	0	0	0	0	0	0	0	12614	870	30	4		4	PRKCB	16	23999801	Intron	DNP	CC	TCGA-05-4382-01A-01D-1265-08	505585	23999801	66354952	2593	4617											
PRKCB	5579	broad.mit.edu	37	chr16	24196717	24196717	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaggagggtctgccagttGaggggagctagggggagggt	24	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24196717	C	C	24196717	1	2	4	0	1	0	0	0	0	0	0	0	12614	1305	45	4		4	PRKCB	16	24196717	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	196916	24196717	66158036	2594	4618											
CACNG3	10368	broad.mit.edu	37	chr16	24366100	24366100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgcgcttgcaatgggaGgaccccaggggctggctggg	17	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24366100	T	T	24366100	1	4	4	0	1	0	0	0	0	0	0	0	2584	1015	35	2		2	CACNG3	16	24366100	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	169383	24366100	65988653	2595	4619											
CACNG3	10368	broad.mit.edu	37	chr16	24373044	24373044	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgatgttcaccctctcccggGacccctcaaagatcaccatg	7	17	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24373044	A	A	24373044	3	1	4	1	0	0	0	0	1	0	0	0	2584	1174	41	4	822	4	CACNG3	16	24373044	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6944	24373044	65981709	2596	4620											
TNRC6A	27327	broad.mit.edu	37	chr16	24801619	24801619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatgcaactctaatgcaGcctggcgtaaatggtcctat	10	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24801619	T	T	24801619	3	4	4	1	0	0	0	0	1	0	0	0	16463	962	34	3	1678	3	TNRC6A	16	24801619	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	428575	24801619	65553134	2597	4621											
SLC5A11	115584	broad.mit.edu	37	chr16	24888676	24888676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatcactgctgtatacaCggttgctggtaagactgaac	11	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24888676	A	A	24888676	3	1	4	1	0	0	0	0	1	0	0	0	14777	536	19	3	597	3	SLC5A11	16	24888676	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	87057	24888676	65466077	2598	4622											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25264435	25264435	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctctctttttaagagatGagtatgtattgaaacaccaa	7	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25264435	T	T	25264435	1	4	4	0	1	0	0	0	0	0	0	0	17813	1305	45	3		3	ZKSCAN2	16	25264435	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	375759	25264435	65090318	2599	4623											
IL4R	3566	broad.mit.edu	37	chr16	27373906	27373906	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggctaacagagagcctgttCctggacctgctcggagagga	14	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27373906	T	T	27373906	2	4	4	1	0	0	0	0	0	0	0	1	7768	854	30	4		4	IL4R	16	27373906	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2109471	27373906	62980847	2600	4624											
IL21R	50615	broad.mit.edu	37	chr16	27460382	27460382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctgggggactgccctgGggtggccggtcacctggagg	21	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27460382	T	T	27460382	3	4	4	1	0	0	0	0	1	0	0	0	7741	1241	43	2	1425	2	IL21R	16	27460382	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	86476	27460382	62894371	2601	4625											
GTF3C1	2975	broad.mit.edu	37	chr16	27476638	27476638	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgccttctccaaggccgaGaaccgtctgcgcagctcctc	9	18	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27476638	A	A	27476638	2	1	4	1	0	0	0	0	0	0	0	1	6937	933	33	4		4	GTF3C1	16	27476638	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	16256	27476638	62878115	2602	4626											
SULT1A2	6799	broad.mit.edu	37	chr16	28603402	28603402	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccatcttcttcgcatagtCcgcatcgaagcgctcattct	7	14	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28603402	T	T	28603402	3	4	4	1	0	0	0	0	1	0	0	0	15491	855	30	4	56	4	SULT1A2	16	28603402	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1126764	28603402	61751351	2603	4627											
SPN	6693	broad.mit.edu	37	chr16	29675184	29675184	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctgagctcaaagatgtaCaccacttcaataacaagtga	6	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29675184	A	A	29675184	4	1	4	1	0	0	0	0	0	1	0	0	15191	489	17	3	137	3	SPN	16	29675184	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1071782	29675184	60679569	2604	4628											
SEZ6L2	26470	broad.mit.edu	37	chr16	29884746	29884746	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgggttcaggcacggctcgTacttcactgcggggagcatg	15	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29884746	A	A	29884746	3	1	4	1	0	0	0	0	1	0	0	0	14257	1638	57	5	488	5	SEZ6L2	16	29884746	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	209562	29884746	60470007	2605	4629											
TAOK2	9344	broad.mit.edu	37	chr16	29990035	29990035	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatcaccccggggacatAgcttgagtacaggacagtca	11	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29990035	T	T	29990035	1	4	4	0	1	0	0	0	0	0	0	0	15667	435	15	5		5	TAOK2	16	29990035	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	105289	29990035	60364718	2606	4630											
TAOK2	9344	broad.mit.edu	37	chr16	29998855	29998855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctcgactctggttgcggGttctgctgcgcctgtcaccc	11	14	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29998855	T	T	29998855	3	4	4	1	0	0	0	0	1	0	0	0	15667	1261	44	3	3320	3	TAOK2	16	29998855	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	8820	29998855	60355898	2607	4631											
DOC2A	8448	broad.mit.edu	37	chr16	30021412	30021412	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccgccgcccccgccgccCccttcaggtcctggtccccg	9	25	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30021412	T	T	30021412	2	4	4	1	0	0	0	0	0	0	0	1	4723	610	22	4		4	DOC2A	16	30021412	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	22557	30021412	60333341	2608	4632											
FAM57B	83723	broad.mit.edu	37	chr16	30038201	30038201	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggggtgggggagcaaggagGaaaggggacaccagtgattg	21	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30038201	A	A	30038201	1	1	4	0	1	0	0	0	0	0	0	0	5640	1189	41	4		4	FAM57B	16	30038201	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	16789	30038201	60316552	2609	4633											
ITGAL	3683	broad.mit.edu	37	chr16	30495130	30495130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggggagtctctcatctcCtcctttcctggacacaggac	10	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30495130	A	A	30495130	1	1	4	0	1	0	0	0	0	0	0	0	7956	696	24	2		2	ITGAL	16	30495130	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	456929	30495130	59859623	2610	4634											
ITGAL	3683	broad.mit.edu	37	chr16	30507518	30507518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagacatcaacggcgatgGgctggtagacgtggctgtgg	17	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30507518	T	T	30507518	3	4	4	1	0	0	0	0	1	0	0	0	7956	1232	43	2	1658	2	ITGAL	16	30507518	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	12388	30507518	59847235	2611	4635											
ITGAL	3683	broad.mit.edu	37	chr16	30510525	30510525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatatcacaatctgtttcCagatcaagtctctcatcccc	3	13	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30510525	A	A	30510525	3	1	4	1	0	0	0	0	1	0	0	0	7956	595	21	2	2025	2	ITGAL	16	30510525	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3007	30510525	59844228	2612	4636											
SRCAP	10847	broad.mit.edu	37	chr16	30724540	30724540	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccctcagggctggaccaaGcccaatgcctttcatgtgtg	10	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30724540	A	A	30724540	2	1	4	1	0	0	0	0	0	0	0	1	15253	962	34	4		4	SRCAP	16	30724540	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	214015	30724540	59630213	2613	4637											
HSD3B7	80270	broad.mit.edu	37	chr16	30998105	30998105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcccaaggaggccggGgccgagagcaagctgtcggg	18	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30998105	T	T	30998105	1	4	4	0	1	0	0	0	0	0	0	0	7459	1247	43	2		2	HSD3B7	16	30998105	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	273565	30998105	59356648	2614	4638											
PRSS36	146547	broad.mit.edu	37	chr16	31157042	31157042	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgaggcttggagagatGtcctttatctatttgtcact	10	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31157042	A	A	31157042	1	1	4	0	1	0	0	0	0	0	0	0	12731	1392	48	4		4	PRSS36	16	31157042	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	158937	31157042	59197711	2615	4639											
PRSS36	146547	broad.mit.edu	37	chr16	31157193	31157193	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaggttgaagggaccggGctggctgtagagacattgac	17	6	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31157193	A	A	31157193	3	1	4	1	0	0	0	0	1	0	0	0	12731	1203	42	4	1970	4	PRSS36	16	31157193	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	151	31157193	59197560	2616	4640											
ITGAX	3687	broad.mit.edu	37	chr16	31374570	31374570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggctctgacagtgctgGgggatgtgaatggggacaag	20	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31374570	T	T	31374570	3	4	4	1	0	0	0	0	1	0	0	0	7959	1232	43	2	1639	2	ITGAX	16	31374570	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	217377	31374570	58980183	2617	4641											
NETO2	81831	broad.mit.edu	37	chr16	47163110	47163110	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaataaagtaaaaattcatCcaataaaagaaatcgttcaa	3	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47163110	A	A	47163110	1	1	4	0	1	0	0	0	0	0	0	0	10435	870	30	3		3	NETO2	16	47163110	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	15788540	47163110	43191643	2618	4642											
ABCC12	94160	broad.mit.edu	37	chr16	48130772	48130772	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgaggacatccattctcAgcgcaaaccacctgagagca	8	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48130772	T	T	48130772	3	4	4	1	0	0	0	0	1	0	0	0	52	188	7	5	1031	5	ABCC12	16	48130772	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	967662	48130772	42223981	2619	4643											
ABCC12	94160	broad.mit.edu	37	chr16	48138953	48138953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctatgagggctctggctGtccccagagcccagcaccat	11	15	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48138953	T	T	48138953	1	4	4	0	1	0	0	0	0	0	0	0	52	1392	48	3		3	ABCC12	16	48138953	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	8181	48138953	42215800	2620	4644											
ABCC12	94160	broad.mit.edu	37	chr16	48162380	48162380	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacacccacctttctcaccAcaaagcttatgctgtgcaga	5	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48162380	T	T	48162380	3	4	4	1	0	0	0	0	1	0	0	0	52	159	6	5	2658	5	ABCC12	16	48162380	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	23427	48162380	42192373	2621	4645											
ABCC12	94160	broad.mit.edu	37	chr16	48162469	48162469	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtggactcctctcactGtatgcctctgacctctgttt	9	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48162469	T	T	48162469	4	4	4	1	0	0	0	0	0	1	0	0	52	1372	48	3	2747	3	ABCC12	16	48162469	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	89	48162469	42192284	2622	4646											
ABCC11	85320	broad.mit.edu	37	chr16	48210806	48210806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggcaaaggaggagctgGggacgctcgcccaggaagct	17	9	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48210806	T	T	48210806	1	4	4	0	1	0	0	0	0	0	0	0	51	1247	43	2		2	ABCC11	16	48210806	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	48337	48210806	42143947	2623	4647											
C16orf78	123970	broad.mit.edu	37	chr16	49433192	49433192	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagcatggccctctaaatAgctcctctcgccaccacctt	5	19	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49433192	T	T	49433192	1	4	4	0	1	0	0	0	0	0	0	0	1849	435	15	5		5	C16orf78	16	49433192	3'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	1222386	49433192	40921561	2624	4648											
CHD9	80205	broad.mit.edu	37	chr16	53331002	53331002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acataagaaaactgatgataGtttggaaaaatatttgtacg	8	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53331002	T	T	53331002	3	4	4	1	0	0	0	0	1	0	0	0	3363	1029	36	3	5759	3	CHD9	16	53331002	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3897810	53331002	37023751	2625	4649											
MMP2	4313	broad.mit.edu	37	chr16	55525859	55525859	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgacatcaagggcattcagGagctctatggtaaacctccg	10	10	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55525859	T	T	55525859	4	4	4	1	0	0	0	0	0	1	0	0	9751	1175	41	3	1364	3	MMP2	16	55525859	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2194857	55525859	34828894	2626	4650											
MMP2	4313	broad.mit.edu	37	chr16	55530859	55530859	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttggcggactgtgacGccacgtgacaagcccatggg	13	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55530859	A	A	55530859	2	1	4	1	0	0	0	0	0	0	0	1	9751	1074	38	4		4	MMP2	16	55530859	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	5000	55530859	34823894	2627	4651											
LPCAT2	54947	broad.mit.edu	37	chr16	55562356	55562356	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaatgggatttatagttGctgtaaaaggaaagattgca	10	3	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55562356	T	T	55562356	3	4	4	1	0	0	0	0	1	0	0	0	8998	1319	46	3	389	3	LPCAT2	16	55562356	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	31497	55562356	34792397	2628	4652											
GNAO1	2775	broad.mit.edu	37	chr16	56388845	56388845	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcaaaaaccgctcaccCaacaaagaaatatattgtca	5	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56388845	A	A	56388845	2	1	4	1	0	0	0	0	0	0	0	1	6572	581	21	2		2	GNAO1	16	56388845	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	826489	56388845	33965908	2629	4653											
SLC12A3	6559	broad.mit.edu	37	chr16	56938513	56938513	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaaagttcccataaacaTagccctggcgattcttagca	8	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56938513	C	C	56938513	1	2	4	0	1	0	0	0	0	0	0	0	14497	1421	49	5		5	SLC12A3	16	56938513	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	549668	56938513	33416240	2630	4654											
NLRC5	84166	broad.mit.edu	37	chr16	57099105	57099105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgggggggccttatctGtgtccccttctgtgacaggg	14	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57099105	T	T	57099105	1	4	4	0	1	0	0	0	0	0	0	0	10565	1392	48	3		3	NLRC5	16	57099105	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	160592	57099105	33255648	2631	4655											
GPR56	9289	broad.mit.edu	37	chr16	57695812	57695812	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgggccttgatcttcttctCctttgcttctggcaccttcc	7	15	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57695812	G	G	57695812	3	3	4	1	0	0	0	0	1	0	0	0	6765	855	30	4	1947	4	GPR56	16	57695812	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	596707	57695812	32658941	2632	4656											
GPR56	9289	broad.mit.edu	37	chr16	57697456	57697456	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcagacagcgccaggctcCccatcagctcgggcagcacc	10	18	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57697456	T	T	57697456	3	4	4	1	0	0	0	0	1	0	0	0	6765	623	22	4	2109	4	GPR56	16	57697456	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1644	57697456	32657297	2633	4657											
C16orf80	29105	broad.mit.edu	37	chr16	58148824	58148824	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgcgacaatttgcatggaTctgtcaaggcaatgcttctt	10	8	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58148824	C	C	58148824	3	2	4	1	0	0	0	0	1	0	0	0	1851	1449	50	5	123	5	C16orf80	16	58148824	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	451368	58148824	32205929	2634	4658											
NDRG4	65009	broad.mit.edu	37	chr16	58541757	58541757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaacggtgcccaatgcCaagacgctccggtgagtggc	14	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58541757	A	A	58541757	2	1	4	1	0	0	0	0	0	0	0	1	10349	581	21	2		2	NDRG4	16	58541757	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	392933	58541757	31812996	2635	4659											
CNOT1	23019	broad.mit.edu	37	chr16	58572800	58572800	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcagcaccacttgtggcatCtagtaagccctctacagcct	7	14	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58572800	A	A	58572800	3	1	4	1	0	0	0	0	1	0	0	0	3649	913	32	3	2175	3	CNOT1	16	58572800	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	31043	58572800	31781953	2636	4660											
CDH8	1006	broad.mit.edu	37	chr16	61851501	61851501	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaagagaagaccggaggctCatcagcatcttcaaccacga	10	11	4	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61851501	G	G	61851501	3	3	4	1	0	0	0	0	1	0	0	0	3146	835	29	4	1264	4	CDH8	16	61851501	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3278701	61851501	28503252	2637	4661											
CDH8	1006	broad.mit.edu	37	chr16	62055384	62055384	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggtctgcagccatccaattCatcatgcagtgccgagcatt	9	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62055384	T	T	62055384	1	4	4	0	1	0	0	0	0	0	0	0	3146	841	29	4		4	CDH8	16	62055384	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	203883	62055384	28299369	2638	4662											
CDH11	1009	broad.mit.edu	37	chr16	65005524	65005524	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttggattgtgaatgatttCagggggtaggctgaagataa	14	2	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65005524	T	T	65005524	3	4	4	1	0	0	0	0	1	0	0	0	3127	835	29	4	802	4	CDH11	16	65005524	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2950140	65005524	25349229	2639	4663											
EXOC3L	283849	broad.mit.edu	37	chr16	67223470	67223470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattacaggcgtgagccactGcgcccagccagtcccatctt	10	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67223470	T	T	67223470	1	4	4	0	1	0	0	0	0	0	0	0	5346	1334	46	3		3	EXOC3L	16	67223470	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2217946	67223470	23131283	2640	4664											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67861260	67861260	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagacttgctcaactaCcgctcactgtttatggaggt	9	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67861260	A	A	67861260	4	1	4	1	0	0	0	0	0	1	0	0	16757	518	18	3	1657	3	TSNAXIP1	16	67861260	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	637790	67861260	22493493	2641	4665											
NFATC3	4775	broad.mit.edu	37	chr16	68248276	68248276	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accagccatcaggttcagcaGagaaatggcctaaccacagt	9	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68248276	C	C	68248276	1	2	4	0	1	0	0	0	0	0	0	0	10459	943	33	4		4	NFATC3	16	68248276	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	387016	68248276	22106477	2642	4666											
CIRH1A	84916	broad.mit.edu	37	chr16	69167644	69167644	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcccctctgaagttgcttaGaactaccaaacttctgagat	7	11	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69167644	A	A	69167644	1	1	4	0	1	0	0	0	0	0	0	0	3465	957	33	4		4	CIRH1A	16	69167644	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	919368	69167644	21187109	2643	4667											
PDPR	55066	broad.mit.edu	37	chr16	70154618	70154618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattgtccttttggagcagGgcaggtaaggatcagactgc	13	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70154618	T	T	70154618	3	4	4	1	0	0	0	0	1	0	0	0	11783	1232	43	2	225	2	PDPR	16	70154618	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	986974	70154618	20200135	2644	4668											
DDX19A	55308	broad.mit.edu	37	chr16	70398906	70398906	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctaaactcatcctttatGatttttctgtcagtgtctgt	5	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70398906	A	A	70398906	1	1	4	0	1	0	0	0	0	0	0	0	4379	1305	45	4		4	DDX19A	16	70398906	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	244288	70398906	19955847	2645	4669											
SF3B3	23450	broad.mit.edu	37	chr16	70564530	70564530	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcctgagtttttatacttGtagagttactgctgttaata	7	5	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70564530	A	A	70564530	1	1	4	0	1	0	0	0	0	0	0	0	14265	1392	48	4		4	SF3B3	16	70564530	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	165624	70564530	19790223	2646	4670											
VAC14	55697	broad.mit.edu	37	chr16	70815929	70815929	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaggggaatcagggggttCagaggggccagcacacgcag	19	8	2	1	rs117267381	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70815929	A	A	70815929	1	1	4	0	1	0	0	0	0	0	0	0	17238	841	29	3		3	VAC14	16	70815929	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	251399	70815929	19538824	2647	4671											
HYDIN	54768	broad.mit.edu	37	chr16	70900088	70900088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactcaaacactcgggtctGgtaaaccaaggtttccttaa	7	11	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70900088	T	T	70900088	3	4	4	1	0	0	0	0	1	0	0	0	7537	1357	47	2	3990	2	HYDIN	16	70900088	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	84159	70900088	19454665	2648	4672											
HYDIN	54768	broad.mit.edu	37	chr16	71015470	71015470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatgtgaactgataaagCcctacgcggtagaaagacca	10	9	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71015470	A	A	71015470	3	1	4	1	0	0	0	0	1	0	0	0	7537	753	26	3	11263	3	HYDIN	16	71015470	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	115382	71015470	19339283	2649	4673											
CALB2	794	broad.mit.edu	37	chr16	71417234	71417234	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatgagggaccgaatgcacGagtcaggagtactaaagagg	15	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71417234	T	T	71417234	1	4	4	0	1	0	0	0	0	0	0	0	2600	1073	37	3		3	CALB2	16	71417234	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	401764	71417234	18937519	2650	4674											
PHLPP2	23035	broad.mit.edu	37	chr16	71697944	71697944	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catactcaaactctcctctcCagtgcaggcggatggtaaag	9	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71697944	A	A	71697944	4	1	4	1	0	0	0	0	0	1	0	0	11950	603	21	2	2156	2	PHLPP2	16	71697944	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	280710	71697944	18656809	2651	4675											
RFWD3	55159	broad.mit.edu	37	chr16	74662537	74662537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgaggcagctctgggCatgtatgacagggagaccag	16	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74662537	T	T	74662537	3	4	4	1	0	0	0	0	1	0	0	0	13369	710	25	4	554	4	RFWD3	16	74662537	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2964593	74662537	15692216	2652	4676											
WDR59	79726	broad.mit.edu	37	chr16	74976635	74976635	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaaaaaagagattactcaCcctcttatcccatatccgca	5	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74976635	T	T	74976635	5	4	4	1	0	0	0	0	0	0	1	0	17435	521	18	4	2469	4	WDR59	16	74976635	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	314098	74976635	15378118	2653	4677											
TMEM231	79583	broad.mit.edu	37	chr16	75576504	75576504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctacctgtgactcaccgttCctctcctggtaggcagcaac	8	15	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75576504	A	A	75576504	3	1	4	1	0	0	0	0	1	0	0	0	16272	854	30	3	302	3	TMEM231	16	75576504	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	599869	75576504	14778249	2654	4678											
MON1B	22879	broad.mit.edu	37	chr16	77228148	77228148	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggtgtgtgtatggtaGgagagggcagaagagcccca	18	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77228148	A	A	77228148	1	1	4	0	1	0	0	0	0	0	0	0	9793	1015	35	4		4	MON1B	16	77228148	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1651644	77228148	13126605	2655	4679											
ADAMTS18	170692	broad.mit.edu	37	chr16	77359870	77359870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagctattttcattgcaaGggttaatattgcacagctga	8	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77359870	T	T	77359870	3	4	4	1	0	0	0	0	1	0	0	0	263	1000	35	2	1784	2	ADAMTS18	16	77359870	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	131722	77359870	12994883	2656	4680											
VAT1L	57687	broad.mit.edu	37	chr16	77896678	77896678	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctgtgttccactgtcCccaacgtgactgtctttgga	9	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77896678	G	G	77896678	3	3	4	1	0	0	0	0	1	0	0	0	17257	623	22	4	627	4	VAT1L	16	77896678	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	536808	77896678	12458075	2657	4681											
CDYL2	124359	broad.mit.edu	37	chr16	80638384	80638384	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaggcattccttctcgttCacgtcttccagcactgattt	7	12	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80638384	T	T	80638384	2	4	4	1	0	0	0	0	0	0	0	1	3216	813	29	4		4	CDYL2	16	80638384	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2741706	80638384	9716369	2658	4682											
PLCG2	5336	broad.mit.edu	37	chr16	81916772	81916772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacagtgccagactaagtGgggcgttctgggtggcaggc	16	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81916772	T	T	81916772	1	4	4	0	1	0	0	0	0	0	0	0	12131	1363	47	2		2	PLCG2	16	81916772	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1278388	81916772	8437981	2659	4683											
OSGIN1	29948	broad.mit.edu	37	chr16	83992864	83992864	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctccaccctctctccccaGgtaacggcccctctggtatc	6	20	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83992864	T	T	83992864	5	4	4	1	0	0	0	0	0	0	1	0	11383	1014	35	2	330	2	OSGIN1	16	83992864	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	2076092	83992864	6361889	2660	4684											
SLC38A8	146167	broad.mit.edu	37	chr16	84063088	84063088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggctgcaacacagatGctaaaattacctgaaacccg	7	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84063088	T	T	84063088	1	4	4	0	1	0	0	0	0	0	0	0	14724	1334	46	3		3	SLC38A8	16	84063088	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	70224	84063088	6291665	2661	4685											
LRRC50	123872	broad.mit.edu	37	chr16	84189346	84189346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcattctggaaagcatgCccgatttggtaaaaaacaaa	9	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84189346	A	A	84189346	3	1	4	1	0	0	0	0	1	0	0	0	9096	739	26	3	751	3	LRRC50	16	84189346	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	126258	84189346	6165407	2662	4686											
WFDC1	58189	broad.mit.edu	37	chr16	84352936	84352936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctctctgggtgaggtgCgttccctgcacccgtcccgg	13	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84352936	A	A	84352936	1	1	4	0	1	0	0	0	0	0	0	0	17473	783	27	3		3	WFDC1	16	84352936	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	163590	84352936	6001817	2663	4687											
KIAA0513	9764	broad.mit.edu	37	chr16	85112585	85112585	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagatctacctgtacaCgcacctgaagcaacagccca	9	13	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85112585	T	T	85112585	3	4	4	1	0	0	0	0	1	0	0	0	8251	536	19	4	904	4	KIAA0513	16	85112585	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	759649	85112585	5242168	2664	4688											
JPH3	57338	broad.mit.edu	37	chr16	87677997	87677997	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgcgcagcgagcacacCaacggcacggcgctgcatcc	11	18	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87677997	T	T	87677997	2	4	4	1	0	0	0	0	0	0	0	1	8032	581	21	4		4	JPH3	16	87677997	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2565412	87677997	2676756	2665	4689											
JPH3	57338	broad.mit.edu	37	chr16	87678562	87678562	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcgggccagcaagatccgcGagaaggtggaccgcgccgtt	16	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87678562	T	T	87678562	4	4	4	1	0	0	0	0	0	1	0	0	8032	1059	37	3	1087	3	JPH3	16	87678562	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	565	87678562	2676191	2666	4690											
KLHDC4	54758	broad.mit.edu	37	chr16	87742113	87742113	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatacacgtcagcgcagcTgaggcaggtgggggaggctg	17	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87742113	A	A	87742113	1	1	4	0	1	0	0	0	0	0	0	0	8429	1595	55	5		5	KLHDC4	16	87742113	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	63551	87742113	2612640	2667	4691											
CA5A	763	broad.mit.edu	37	chr16	87921828	87921828	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgatagttgttcaccatcatCttctcctcttcaccaagtgc	5	14	6	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87921828	T	T	87921828	2	4	4	1	0	0	0	0	0	0	0	1	2545	912	32	4		4	CA5A	16	87921828	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	179715	87921828	2432925	2668	4692											
CDH15	1013	broad.mit.edu	37	chr16	89246675	89246675	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggacccggcgtggatgaggAgccccggggcgtcttctcta	17	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89246675	T	T	89246675	3	4	4	1	0	0	0	0	1	0	0	0	3130	304	11	5	279	5	CDH15	16	89246675	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1324847	89246675	1108078	2669	4693											
TCF25	22980	broad.mit.edu	37	chr16	89965309	89965309	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagcctggtgaggccccgtgGagggacggacacctgcttct	16	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89965309	C	C	89965309	1	2	4	0	1	0	0	0	0	0	0	0	15815	1189	41	4		4	TCF25	16	89965309	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	718634	89965309	389444	2670	4694											
C17orf97	400566	broad.mit.edu	37	chr17	263129	263129	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atagagaaccttgcgaatcgGatcaacgaaagtctgcgttg	11	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	263129	A	A	263129	2	1	4	1	0	0	0	0	0	0	0	1	1910	1161	41	4		4	C17orf97	17	263129	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08		263129	80932081	2671	4695											
KIAA0664	23277	broad.mit.edu	37	chr17	2604050	2604050	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcaatccatggcatgctcCgcctggggggctgtccagct	13	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2604050	A	A	2604050	2	1	4	1	0	0	0	0	0	0	0	1	8259	639	23	1		1	KIAA0664	17	2604050	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2340921	2604050	78591160	2672	4696											
OR1E2	8388	broad.mit.edu	37	chr17	3337147	3337147	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccatcatgctctgtctccAgtatctttaagagaatataa	5	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3337147	T	T	3337147	1	4	4	0	1	0	0	0	0	0	0	0	11049	203	7	5		5	OR1E2	17	3337147	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	733097	3337147	77858063	2673	4697											
TRPV3	162514	broad.mit.edu	37	chr17	3430103	3430104	+	Intron	INS	-	A	A													cagccaccatacaggacgtcINSaaccctgcctgtgaggcgat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3430104	A	A	3430103	6	5	4	0	1	1	1	0	0	0	0	0	16722	841	29	0		0	TRPV3	17	3430103	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	92956	3430103	77765107	2674	4698											
P2RX1	5023	broad.mit.edu	37	chr17	3806697	3806697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggagggtgcccaccacgCcccaaagcctggggacccct	13	18	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3806697	A	A	3806697	1	1	4	0	1	0	0	0	0	0	0	0	11433	754	26	3		3	P2RX1	17	3806697	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	376594	3806697	77388513	2675	4699											
ZZEF1	23140	broad.mit.edu	37	chr17	3917580	3917580	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctccagtaagttcccttctCaatattaagtttaaacactg	4	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3917580	A	A	3917580	1	1	4	0	1	0	0	0	0	0	0	0	18384	841	29	3		3	ZZEF1	17	3917580	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	110883	3917580	77277630	2676	4700											
ZZEF1	23140	broad.mit.edu	37	chr17	3975803	3975803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagctaactgcttaataCgggtagtaagatagaaacac	10	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3975803	A	A	3975803	1	1	4	0	1	0	0	0	0	0	0	0	18384	551	19	3		3	ZZEF1	17	3975803	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	58223	3975803	77219407	2677	4701											
MYBBP1A	10514	broad.mit.edu	37	chr17	4443107	4443107	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcccgccggtggctgcaGgtgtgccatcctccgctggc	15	16	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4443107	A	A	4443107	3	1	4	1	0	0	0	0	1	0	0	0	10102	1000	35	4	440	4	MYBBP1A	17	4443107	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	467304	4443107	76752103	2678	4702											
PLD2	5338	broad.mit.edu	37	chr17	4722217	4722217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaggctgtcactcctGtgagcctctgacgctacgca	13	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4722217	T	T	4722217	1	4	4	0	1	0	0	0	0	0	0	0	12141	1392	48	3		3	PLD2	17	4722217	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	279110	4722217	76472993	2679	4703											
GPR172B	55065	broad.mit.edu	37	chr17	4937715	4937715	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggacaaagagctgccacAggccacctttctgggcatac	11	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4937715	T	T	4937715	1	4	4	0	1	0	0	0	0	0	0	0	6735	203	7	5		5	GPR172B	17	4937715	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	215498	4937715	76257495	2680	4704											
USP6	9098	broad.mit.edu	37	chr17	5041121	5041121	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccaagggcagcttcctcAcactgtcctcatgatcctct	8	16	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5041121	G	G	5041121	1	3	4	0	1	0	0	0	0	0	0	0	17213	174	6	5		5	USP6	17	5041121	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	103406	5041121	76154089	2681	4705											
NLRP1	22861	broad.mit.edu	37	chr17	5424835	5424835	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagcctttctggctctTagtgtcaccttccgaatgga	10	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5424835	C	C	5424835	1	2	4	0	1	0	0	0	0	0	0	0	10566	1769	61	5		5	NLRP1	17	5424835	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	383714	5424835	75770375	2682	4706											
MED31	51003	broad.mit.edu	37	chr17	6554904	6554904	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcaaaagcccagagacgCgggcgaagttccggaaacca	13	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6554904	A	A	6554904	1	1	4	0	1	0	0	0	0	0	0	0	9542	783	27	3		3	MED31	17	6554904	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	1130069	6554904	74640306	2683	4707											
BCL6B	255877	broad.mit.edu	37	chr17	6929781	6929781	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattccccttcccaggaagtGaatttttcagctgccagaac	7	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6929781	T	T	6929781	4	4	4	1	0	0	0	0	0	1	0	0	1382	1291	45	3	913	3	BCL6B	17	6929781	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	374877	6929781	74265429	2684	4708											
C17orf81	23587	broad.mit.edu	37	chr17	7158125	7158125	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcaggactcttgtcctggtGagacccctccttcattgttt	8	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7158125	A	A	7158125	1	1	4	0	1	0	0	0	0	0	0	0	1903	1305	45	4		4	C17orf81	17	7158125	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	228344	7158125	74037085	2685	4709											
TP53	7157	broad.mit.edu	37	chr17	7577123	7577123	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggacaggcacaaacacgcAcctcaaagctgttccgtccc	8	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7577123	C	C	7577123	3	2	4	1	0	0	0	0	1	0	0	0	16505	159	6	5	471	5	TP53	17	7577123	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	418998	7577123	73618087	2686	4710											
DNAH2	146754	broad.mit.edu	37	chr17	7722377	7722377	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatcaacactgacttggcgcGggaggtaagctcccggccct	13	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7722377	C	C	7722377	3	2	4	1	0	0	0	0	1	0	0	0	4642	1116	39	4	11089	4	DNAH2	17	7722377	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	145254	7722377	73472833	2687	4711											
SPDYE4	388333	broad.mit.edu	37	chr17	8659652	8659652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgcacccttccccaggaCgtgtgttaaagcaggaacac	10	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8659652	A	A	8659652	1	1	4	0	1	0	0	0	0	0	0	0	15149	551	19	3		3	SPDYE4	17	8659652	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	937275	8659652	72535558	2688	4712											
PIK3R6	146850	broad.mit.edu	37	chr17	8706526	8706526	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggccttgctctggctgttGgtgtgagtgtttggagttgg	18	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8706526	A	A	8706526	1	1	4	0	1	0	0	0	0	0	0	0	12018	1363	47	4		4	PIK3R6	17	8706526	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	46874	8706526	72488684	2689	4713											
PIK3R5	23533	broad.mit.edu	37	chr17	8814703	8814703	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctccccggctcccttggAccgacctgaccaggaggtgg	12	17	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8814703	T	T	8814703	1	4	4	0	1	0	0	0	0	0	0	0	12017	290	10	5		5	PIK3R5	17	8814703	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	108177	8814703	72380507	2690	4714											
NTN1	9423	broad.mit.edu	37	chr17	9124293	9124293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggtgggtgggtcggacGggggccctttgtccctcagg	21	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9124293	T	T	9124293	1	4	4	0	1	0	0	0	0	0	0	0	10795	1131	39	1		1	NTN1	17	9124293	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	309590	9124293	72070917	2691	4715											
GAS7	8522	broad.mit.edu	37	chr17	9821265	9821265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacggcctagcgccaggcGgctctccccaggccccgtgt	13	19	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9821265	T	T	9821265	1	4	4	0	1	0	0	0	0	0	0	0	6312	1131	39	1		1	GAS7	17	9821265	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	696972	9821265	71373945	2692	4716											
GAS7	8522	broad.mit.edu	37	chr17	9830018	9830018	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcggcaatgtggtggtcGcacttcttcatgtctttctt	11	9	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9830018	T	T	9830018	4	4	4	1	0	0	0	0	0	1	0	0	6312	1079	38	3	496	3	GAS7	17	9830018	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	8753	9830018	71365192	2693	4717											
GAS7	8522	broad.mit.edu	37	chr17	9837476	9837476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagggtggctgcagggagGggttaccttggcagagaact	18	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9837476	T	T	9837476	1	4	4	0	1	0	0	0	0	0	0	0	6312	1247	43	2		2	GAS7	17	9837476	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	7458	9837476	71357734	2694	4718											
GAS7	8522	broad.mit.edu	37	chr17	9846424	9846424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccccagggctgggaggGgcccaggcttcacctttccc	14	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9846424	T	T	9846424	1	4	4	0	1	0	0	0	0	0	0	0	6312	1247	43	2		2	GAS7	17	9846424	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	8948	9846424	71348786	2695	4719											
MYH13	8735	broad.mit.edu	37	chr17	10209868	10209868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtccttcaccgtctGctccaggttcttcttcatcc	7	16	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10209868	T	T	10209868	3	4	4	1	0	0	0	0	1	0	0	0	10126	1328	46	3	462	3	MYH13	17	10209868	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	363444	10209868	70985342	2696	4720											
MYH4	4622	broad.mit.edu	37	chr17	10359111	10359112	+	Intron	DNP	GG	TT	TT													acacacactggagcttgtctGgatatcagaaatgtcttacc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10359112	TT	TT	10359111	1	4	4	0	1	0	0	0	0	0	0	0	10131	1363	47	2		2	MYH4	17	10359111	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	149243	10359111	70836099	2697	4721											
MYH1	4619	broad.mit.edu	37	chr17	10409387	10409387	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtgggggtgagtgctcctCaagttggtcatcagcttatt	13	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10409387	A	A	10409387	3	1	4	1	0	0	0	0	1	0	0	0	10123	825	29	3	3913	3	MYH1	17	10409387	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	50276	10409387	70785823	2698	4722											
MYH1	4619	broad.mit.edu	37	chr17	10411224	10411224	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaagagagcagacacagtCtggaaagaagaacccttctt	10	9	2	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10411224	G	G	10411224	3	3	4	1	0	0	0	0	1	0	0	0	10123	912	32	4	3968	4	MYH1	17	10411224	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1837	10411224	70783986	2699	4723											
MYH3	4621	broad.mit.edu	37	chr17	10547773	10547773	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccatccacaagaacaaCttttcataaactgattttga	5	9	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10547773	T	T	10547773	2	4	4	1	0	0	0	0	0	0	0	1	10130	564	20	4		4	MYH3	17	10547773	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	136549	10547773	70647437	2700	4724											
DNAH9	1770	broad.mit.edu	37	chr17	11593083	11593083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattggaatggtgacctccaGcatccatgcctgggagacca	11	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11593083	T	T	11593083	3	4	4	1	0	0	0	0	1	0	0	0	4648	971	34	3	4022	3	DNAH9	17	11593083	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1045310	11593083	69602127	2701	4725											
DNAH9	1770	broad.mit.edu	37	chr17	11738155	11738155	+	Frame_Shift_Del	DEL	C	-	-													cagaaggactgtgaggaggaCctggcaaaggctgagccagc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11738155	-	-	11738155	7	5	4	1	0	1	0	1	0	0	0	0	4648	506	18	0	9641	0	DNAH9	17	11738155	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	145072	11738155	69457055	2702	4726											
RICH2	9912	broad.mit.edu	37	chr17	12846933	12846933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaagctgaataccacaGgaagtccctgacactattgc	9	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12846933	T	T	12846933	3	4	4	1	0	0	0	0	1	0	0	0	13466	1000	35	2	714	2	RICH2	17	12846933	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1108778	12846933	68348277	2703	4727											
ELAC2	60528	broad.mit.edu	37	chr17	12915089	12915089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catggttggtgctttcccctCctctgttcacctggtcagta	9	13	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12915089	A	A	12915089	3	1	4	1	0	0	0	0	1	0	0	0	5089	854	30	3	1982	3	ELAC2	17	12915089	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	68156	12915089	68280121	2704	4728											
NCOR1	9611	broad.mit.edu	37	chr17	15989745	15989745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttatcacttgatgtggagCaggctgaaggacttttaaaa	11	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15989745	A	A	15989745	3	1	4	1	0	0	0	0	1	0	0	0	10330	710	25	3	4390	3	NCOR1	17	15989745	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3074656	15989745	65205465	2705	4729											
TRPV2	51393	broad.mit.edu	37	chr17	16330853	16330853	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggggggatctacctcctcGtgggccaggtgagtgcccct	15	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16330853	T	T	16330853	3	4	4	1	0	0	0	0	1	0	0	0	16721	1145	40	3	1368	3	TRPV2	17	16330853	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	341108	16330853	64864357	2706	4730											
FBXW10	10517	broad.mit.edu	37	chr17	18675739	18675739	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggatggtggtcaacaCagagagcaatgttctcatgt	11	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18675739	T	T	18675739	3	4	4	1	0	0	0	0	1	0	0	0	5820	478	17	4	2067	4	FBXW10	17	18675739	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2344886	18675739	62519471	2707	4731											
CYTSB	92521	broad.mit.edu	37	chr17	20140022	20140022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcttccaaaaaattggaAcagtaggacttaaaatctgt	8	6	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20140022	G	G	20140022	1	3	4	0	1	0	0	0	0	0	0	0	4243	58	2	5		5	CYTSB	17	20140022	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	1464283	20140022	61055188	2708	4732											
KCNJ12	3768	broad.mit.edu	37	chr17	21319454	21319454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcatctttctggtgtcgcCcatcaccatcttgcatgaga	8	14	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21319454	A	A	21319454	3	1	4	1	0	0	0	0	1	0	0	0	8116	623	22	2	802	2	KCNJ12	17	21319454	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1179432	21319454	59875756	2709	4733											
NOS2	4843	broad.mit.edu	37	chr17	26087296	26087296	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcacttcactcccactaGctatttaatagcattatccc	2	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26087296	A	A	26087296	1	1	4	0	1	0	0	0	0	0	0	0	10638	986	34	4		4	NOS2	17	26087296	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4767842	26087296	55107914	2710	4734											
FOXN1	8456	broad.mit.edu	37	chr17	26857695	26857695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatagagcctctcaccagGggtggggggcttggggtggg	19	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26857695	T	T	26857695	1	4	4	0	1	0	0	0	0	0	0	0	6079	1247	43	2		2	FOXN1	17	26857695	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	770399	26857695	54337515	2711	4735											
SUPT6H	6830	broad.mit.edu	37	chr17	27005252	27005252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccattggtgagaaatttaGttaggggatgagggaaaaga	15	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27005252	T	T	27005252	1	4	4	0	1	0	0	0	0	0	0	0	15518	1044	36	3		3	SUPT6H	17	27005252	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	147557	27005252	54189958	2712	4736											
SUPT6H	6830	broad.mit.edu	37	chr17	27017260	27017260	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacattggtaaattctgggGtcatttttttattgggggca	11	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27017260	C	C	27017260	1	2	4	0	1	0	0	0	0	0	0	0	15518	1276	44	4		4	SUPT6H	17	27017260	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	12008	27017260	54177950	2713	4737											
MYO18A	399687	broad.mit.edu	37	chr17	27419580	27419580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccctccttctcctcctcCattcacttcagaccccaggg	5	19	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27419580	A	A	27419580	1	1	4	0	1	0	0	0	0	0	0	0	10159	609	21	2		2	MYO18A	17	27419580	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	402320	27419580	53775630	2714	4738											
EFCAB5	374786	broad.mit.edu	37	chr17	28410128	28410128	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctagatgttatttcttgctAatatttgaaaaccatattaa	4	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28410128	T	T	28410128	1	4	4	0	1	0	0	0	0	0	0	0	4978	377	13	5		5	EFCAB5	17	28410128	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	990548	28410128	52785082	2715	4739											
EFCAB5	374786	broad.mit.edu	37	chr17	28435016	28435016	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attatatgtatgcaaaaatgCcaggggaaggtttgcaagag	12	4	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28435016	G	G	28435016	3	3	4	1	0	0	0	0	1	0	0	0	4978	739	26	4	4743	4	EFCAB5	17	28435016	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	24888	28435016	52760194	2716	4740											
PSMD11	5717	broad.mit.edu	37	chr17	30806346	30806346	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaagttgtatgataacttActagaacagaatctgatccg	8	8	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30806346	T	T	30806346	3	4	4	1	0	0	0	0	1	0	0	0	12800	388	14	5	1028	5	PSMD11	17	30806346	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2371330	30806346	50388864	2717	4741											
ACCN1	40	broad.mit.edu	37	chr17	31415952	31415952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagctcttggatgaaagGtggctcagactgactgtgga	14	9	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31415952	T	T	31415952	3	4	4	1	0	0	0	0	1	0	0	0	128	1261	44	3	807	3	ACCN1	17	31415952	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	609606	31415952	49779258	2718	4742											
ACCN1	40	broad.mit.edu	37	chr17	32365531	32365531	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttagatcaaatgccttgtaAacttcactgaaacctcctct	5	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32365531	T	T	32365531	1	4	4	0	1	0	0	0	0	0	0	0	128	29	1	5		5	ACCN1	17	32365531	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	949579	32365531	48829679	2719	4743											
TMEM132E	124842	broad.mit.edu	37	chr17	32957256	32957256	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccagagtccaggtggctgActcttactcatcctctaaca	7	13	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32957256	T	T	32957256	1	4	4	0	1	0	0	0	0	0	0	0	16171	290	10	5		5	TMEM132E	17	32957256	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	591725	32957256	48237954	2720	4744											
TMEM132E	124842	broad.mit.edu	37	chr17	32964379	32964379	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaggggagctgcttcgcGcagagctaaccatcgctgag	15	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32964379	C	C	32964379	3	2	4	1	0	0	0	0	1	0	0	0	16171	1087	38	4	2121	4	TMEM132E	17	32964379	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7123	32964379	48230831	2721	4745											
RAD51L3	5892	broad.mit.edu	37	chr17	33428230	33428230	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctggctcacctgtcgggaaGatttggccagacacgccatg	13	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33428230	T	T	33428230	3	4	4	1	0	0	0	0	1	0	0	0	13098	942	33	3	101	3	RAD51L3	17	33428230	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	463851	33428230	47766980	2722	4746											
LYZL6	57151	broad.mit.edu	37	chr17	34263782	34263782	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcatcccccgtgctccGgacacaatcctttttgcgca	7	15	1	0	rs148658809		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34263782	A	A	34263782	2	1	4	1	0	0	0	0	0	0	0	1	9222	1103	39	4		4	LYZL6	17	34263782	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	835552	34263782	46931428	2723	4747											
LYZL6	57151	broad.mit.edu	37	chr17	34266291	34266291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacctgggccaagtcacagcGactgatgaggctggcctgat	13	12	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34266291	T	T	34266291	3	4	4	1	0	0	0	0	1	0	0	0	9222	1058	37	3	392	3	LYZL6	17	34266291	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2509	34266291	46928919	2724	4748											
ZNHIT3	9326	broad.mit.edu	37	chr17	34842745	34842745	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggccggggaccctcgGggctgacgcggcctgtggcc	21	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34842745	A	A	34842745	1	1	4	0	1	0	0	0	0	0	0	0	18337	1247	43	4		4	ZNHIT3	17	34842745	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	576454	34842745	46352465	2725	4749											
LHX1	3975	broad.mit.edu	37	chr17	35297818	35297818	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagccttcactcgggtgaGgccccaattcctggctggct	11	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35297818	T	T	35297818	1	4	4	0	1	0	0	0	0	0	0	0	8842	1015	35	2		2	LHX1	17	35297818	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	455073	35297818	45897392	2726	4750											
TADA2A	6871	broad.mit.edu	37	chr17	35797731	35797731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgacctcaggtgatccGcccgcctccgccttccaaag	8	19	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35797731	T	T	35797731	1	4	4	0	1	0	0	0	0	0	0	0	15629	1102	38	3		3	TADA2A	17	35797731	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	499913	35797731	45397479	2727	4751											
PCGF2	7703	broad.mit.edu	37	chr17	36895940	36895940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaggttttgcagacttgGgggtgtggagagagagagga	19	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36895940	A	A	36895940	1	1	4	0	1	0	0	0	0	0	0	0	11669	1247	43	4		4	PCGF2	17	36895940	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1098209	36895940	44299270	2728	4752											
ERBB2	2064	broad.mit.edu	37	chr17	37868064	37868064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcaggtgctgatgcgtGgtagggcatttaagtattgg	16	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37868064	T	T	37868064	1	4	4	0	1	0	0	0	0	0	0	0	5248	1363	47	2		2	ERBB2	17	37868064	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	972124	37868064	43327146	2729	4753											
IKZF3	22806	broad.mit.edu	37	chr17	37995691	37995691	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgattttattaccagttttCatctaaatccactgcggaat	5	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37995691	T	T	37995691	1	4	4	0	1	0	0	0	0	0	0	0	7686	841	29	4		4	IKZF3	17	37995691	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	127627	37995691	43199519	2730	4754											
GSDMB	55876	broad.mit.edu	37	chr17	38065181	38065181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggtgtgtttagggccccCcatcctgttctccatctgcc	9	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38065181	A	A	38065181	1	1	4	0	1	0	0	0	0	0	0	0	6883	638	22	2		2	GSDMB	17	38065181	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	69490	38065181	43130029	2731	4755											
TNS4	84951	broad.mit.edu	37	chr17	38641291	38641291	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagaagggggaccctgtaGgctggacagacgggagctga	18	8	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38641291	A	A	38641291	1	1	4	0	1	0	0	0	0	0	0	0	16468	1015	35	4		4	TNS4	17	38641291	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	576110	38641291	42553919	2732	4756											
KRT28	162605	broad.mit.edu	37	chr17	38953456	38953456	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatgttgttcaacaaaacCgcgaggtctacccccggggc	11	14	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38953456	A	A	38953456	2	1	4	1	0	0	0	0	0	0	0	1	8536	639	23	1		1	KRT28	17	38953456	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	312165	38953456	42241754	2733	4757											
KRTAP4-4	84616	broad.mit.edu	37	chr17	39316800	39316800	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtggtctggcagcactgGggtctgcagcagctggacac	16	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39316800	A	A	39316800	2	1	4	1	0	0	0	0	0	0	0	1	8625	1219	43	4		4	KRTAP4-4	17	39316800	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	363344	39316800	41878410	2734	4758											
KRT9	3857	broad.mit.edu	37	chr17	39726288	39726288	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcagaccagccagggttaGaaaacaatcaagagggaacc	11	10	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39726288	T	T	39726288	1	4	4	0	1	0	0	0	0	0	0	0	8572	957	33	3		3	KRT9	17	39726288	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	409488	39726288	41468922	2735	4759											
KRT17	3872	broad.mit.edu	37	chr17	39775829	39775829	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctcctgggtggccggCcggggtagctgagtcctcag	16	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39775829	A	A	39775829	1	1	4	0	1	0	0	0	0	0	0	0	8525	754	26	3		3	KRT17	17	39775829	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	49541	39775829	41419381	2736	4760											
TUBG1	7283	broad.mit.edu	37	chr17	40766531	40766531	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggtccacaagagcttgcaGaggatccgggaacgcaagtt	13	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40766531	C	C	40766531	3	2	4	1	0	0	0	0	1	0	0	0	16890	933	33	4	1052	4	TUBG1	17	40766531	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	990702	40766531	40428679	2737	4761											
AOC2	314	broad.mit.edu	37	chr17	40997103	40997103	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatgcgggatgtgactgtgGagcgtcacggcgggcccctg	17	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40997103	T	T	40997103	4	4	4	1	0	0	0	0	0	1	0	0	729	1175	41	3	462	3	AOC2	17	40997103	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	230572	40997103	40198107	2738	4762											
AOC2	314	broad.mit.edu	37	chr17	41001305	41001305	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgcgtggggtcaccagcgCgggtaccgaatccagatcca	13	12	1	1	rs33923044	byFrequency;by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41001305	G	G	41001305	2	3	4	1	0	0	0	0	0	0	0	1	729	755	27	4		4	AOC2	17	41001305	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	4202	41001305	40193905	2739	4763											
BRCA1	672	broad.mit.edu	37	chr17	41246314	41246314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatttagaacgtccaataCatcagctactttggcatttg	6	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41246314	A	A	41246314	3	1	4	1	0	0	0	0	1	0	0	0	1507	478	17	3	4483	3	BRCA1	17	41246314	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	245009	41246314	39948896	2740	4764											
NBR1	4077	broad.mit.edu	37	chr17	41345412	41345412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcttccacagaaaagaaGgatgttttggttccctgcct	10	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41345412	T	T	41345412	3	4	4	1	0	0	0	0	1	0	0	0	10295	991	35	2	1323	2	NBR1	17	41345412	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	99098	41345412	39849798	2741	4765											
HDAC5	10014	broad.mit.edu	37	chr17	42155769	42155769	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggctcctgctccatgGgctcctctgccggcctgtgg	15	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42155769	C	C	42155769	3	2	4	1	0	0	0	0	1	0	0	0	7077	1232	43	4	28	4	HDAC5	17	42155769	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	810357	42155769	39039441	2742	4766											
ASB16	92591	broad.mit.edu	37	chr17	42249398	42249398	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatacaccacctcccaaaacTatttgctctccctagggttc	4	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42249398	C	C	42249398	1	2	4	0	1	0	0	0	0	0	0	0	1024	1537	53	5		5	ASB16	17	42249398	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	93629	42249398	38945812	2743	4767											
ATXN7L3	56970	broad.mit.edu	37	chr17	42275573	42275573	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaccttccctccccacctCgctgcccaaagctcagtcct	5	22	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42275573	A	A	42275573	1	1	4	0	1	0	0	0	0	0	0	0	1222	899	31	3		3	ATXN7L3	17	42275573	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	26175	42275573	38919637	2744	4768											
ITGA2B	3674	broad.mit.edu	37	chr17	42457234	42457234	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaccatacacatcccacctTctcctggccagtaggcaccg	6	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42457234	A	A	42457234	1	1	4	0	1	0	0	0	0	0	0	0	7946	1798	62	5		5	ITGA2B	17	42457234	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	181661	42457234	38737976	2745	4769											
ADAM11	4185	broad.mit.edu	37	chr17	42837203	42837203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctggttagggagagctccGggggagaggtccgaaagcag	19	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42837203	T	T	42837203	3	4	4	1	0	0	0	0	1	0	0	0	235	1116	39	1	181	1	ADAM11	17	42837203	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	379969	42837203	38358007	2746	4770											
GJC1	10052	broad.mit.edu	37	chr17	42882703	42882703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccgtcgtcggccatcatgCttaggtttgggttggctctg	13	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42882703	A	A	42882703	3	1	4	1	0	0	0	0	1	0	0	0	6478	796	28	3	711	3	GJC1	17	42882703	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	45500	42882703	38312507	2747	4771											
PLEKHM1	9842	broad.mit.edu	37	chr17	43535874	43535874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagacggagtctcgctctgTtgcccaggctggagtgcaat	14	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43535874	A	A	43535874	1	1	4	0	1	0	0	0	0	0	0	0	12175	1740	60	5		5	PLEKHM1	17	43535874	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	653171	43535874	37659336	2748	4772											
CRHR1	1394	broad.mit.edu	37	chr17	43910880	43910880	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaagctccgggcatccacCacgtctgagaccattcagta	8	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43910880	A	A	43910880	2	1	4	1	0	0	0	0	0	0	0	1	3903	581	21	2		2	CRHR1	17	43910880	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	375006	43910880	37284330	2749	4773											
WNT9B	7484	broad.mit.edu	37	chr17	44950057	44950057	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgagggatgctgcgcacctCggcctgcttgagtgccagtt	14	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44950057	G	G	44950057	2	3	4	1	0	0	0	0	0	0	0	1	17526	871	31	4		4	WNT9B	17	44950057	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1039177	44950057	36245153	2750	4774											
CDC27	996	broad.mit.edu	37	chr17	45206824	45206824	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatagagggttcttgggatCaatgacaatggctttgttta	12	5	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45206824	A	A	45206824	3	1	4	1	0	0	0	0	1	0	0	0	3096	826	29	3	395	3	CDC27	17	45206824	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	256767	45206824	35988386	2751	4775											
OSBPL7	114881	broad.mit.edu	37	chr17	45885789	45885789	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgggagaaggcggtggcagTgaggggtgaacatctagaag	20	4	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45885789	A	A	45885789	1	1	4	0	1	0	0	0	0	0	0	0	11376	1711	59	5		5	OSBPL7	17	45885789	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	678965	45885789	35309421	2752	4776											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46058714	46058714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctggtgagatgggaaaGggaggcctgccagtgggagg	21	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46058714	T	T	46058714	1	4	4	0	1	0	0	0	0	0	0	0	3177	1015	35	2		2	CDK5RAP3	17	46058714	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	172925	46058714	35136496	2753	4777											
HOXB3	3213	broad.mit.edu	37	chr17	46628019	46628019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctcatactcgggcgccgGggtcggagggtacttctgcg	17	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46628019	T	T	46628019	3	4	4	1	0	0	0	0	1	0	0	0	7369	1232	43	2	326	2	HOXB3	17	46628019	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	569305	46628019	34567191	2754	4778											
TTLL6	284076	broad.mit.edu	37	chr17	46863380	46863381	+	Intron	DNP	CC	GG	GG													ctgtgtgccttcagggctccCcgcaccgccccgtcgttgcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	46863381	GG	GG	46863380	1	3	4	0	1	0	0	0	0	0	0	0	16857	638	22	4		4	TTLL6	17	46863380	Intron	DNP	CC	TCGA-05-4382-01A-01D-1265-08	235361	46863380	34331830	2755	4779											
CALCOCO2	10241	broad.mit.edu	37	chr17	46939476	46939476	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accttatcattgacctagatCccctctatcagaagtaacgg	6	12	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46939476	A	A	46939476	1	1	4	0	1	0	0	0	0	0	0	0	2604	870	30	3		3	CALCOCO2	17	46939476	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	76096	46939476	34255734	2756	4780											
IGF2BP1	10642	broad.mit.edu	37	chr17	47117225	47117225	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcaagaagagcaggttcTatgcctttgactgaggaggg	14	6	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47117225	C	C	47117225	1	2	4	0	1	0	0	0	0	0	0	0	7643	1537	53	5		5	IGF2BP1	17	47117225	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	177749	47117225	34077985	2757	4781											
IGF2BP1	10642	broad.mit.edu	37	chr17	47118740	47118740	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctttgtcttcccaagGgctgacgaggttcccctgaa	9	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47118740	C	C	47118740	2	2	4	1	0	0	0	0	0	0	0	1	7643	1246	43	4		4	IGF2BP1	17	47118740	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1515	47118740	34076470	2758	4782											
IGF2BP1	10642	broad.mit.edu	37	chr17	47118892	47118892	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttctatttccctgtttatGagtgggggatgcatgggggc	14	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47118892	T	T	47118892	1	4	4	0	1	0	0	0	0	0	0	0	7643	1305	45	3		3	IGF2BP1	17	47118892	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	152	47118892	34076318	2759	4783											
CA10	56934	broad.mit.edu	37	chr17	49713160	49713160	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggcactccacatttcagtGatttttttttaacatcattc	4	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49713160	C	C	49713160	1	2	4	0	1	0	0	0	0	0	0	0	2537	1305	45	4		4	CA10	17	49713160	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2594268	49713160	31482050	2760	4784											
AKAP1	8165	broad.mit.edu	37	chr17	55187280	55187280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaagcttgaggagcggGtgtggggcagggcctcctgg	19	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55187280	T	T	55187280	1	4	4	0	1	0	0	0	0	0	0	0	445	1276	44	3		3	AKAP1	17	55187280	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5474120	55187280	26007930	2761	4785											
AKAP1	8165	broad.mit.edu	37	chr17	55189395	55189395	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataggaaaccctgcttctcAtcccagggaagggagcatta	10	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55189395	C	C	55189395	1	2	4	0	1	0	0	0	0	0	0	0	445	232	8	5		5	AKAP1	17	55189395	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2115	55189395	26005815	2762	4786											
MPO	4353	broad.mit.edu	37	chr17	56357346	56357346	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataggagttccatggggctgGctgagccgctgcgaagccgc	16	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56357346	C	C	56357346	3	2	4	1	0	0	0	0	1	0	0	0	9826	1203	42	4	1999	4	MPO	17	56357346	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1167951	56357346	24837864	2763	4787											
TEX14	56155	broad.mit.edu	37	chr17	56729334	56729334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccaagttgaacaggacagGggactggaagacgaacagcc	13	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56729334	T	T	56729334	3	4	4	1	0	0	0	0	1	0	0	0	15900	1232	43	2	4574	2	TEX14	17	56729334	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	371988	56729334	24465876	2764	4788											
BRIP1	83990	broad.mit.edu	37	chr17	59820497	59820497	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaccaggagagctccatcTtaaacaacagaaaaaagcat	7	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59820497	A	A	59820497	5	1	4	1	0	0	0	0	0	0	1	0	1523	1623	56	5	1513	5	BRIP1	17	59820497	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	3091163	59820497	21374713	2765	4789											
MRC2	9902	broad.mit.edu	37	chr17	60754627	60754627	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtctcccttccctctccttCagggtacagccgtgggggct	12	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60754627	T	T	60754627	1	4	4	0	1	0	0	0	0	0	0	0	9852	841	29	4		4	MRC2	17	60754627	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	934130	60754627	20440583	2766	4790											
ACE	1636	broad.mit.edu	37	chr17	61558508	61558508	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatggtggtgcctttcccaGacaagcccaacctcgatgtc	9	14	0	1	rs139813210		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61558508	A	A	61558508	3	1	4	1	0	0	0	0	1	0	0	0	136	942	33	4	926	4	ACE	17	61558508	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	803881	61558508	19636702	2767	4791											
ACE	1636	broad.mit.edu	37	chr17	61568155	61568155	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggctggatatgcacaccAaagatgatgtgtgcctcaaa	11	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61568155	T	T	61568155	1	4	4	0	1	0	0	0	0	0	0	0	136	145	5	5		5	ACE	17	61568155	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	9647	61568155	19627055	2768	4792											
ACE	1636	broad.mit.edu	37	chr17	61568643	61568643	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgctgcccgtgcctcCtgagttctggaacaagtcga	14	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61568643	G	G	61568643	3	3	4	1	0	0	0	0	1	0	0	0	136	681	24	4	3090	4	ACE	17	61568643	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	488	61568643	19626567	2769	4793											
FTSJ3	117246	broad.mit.edu	37	chr17	61902562	61902562	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaaaaagtgtgctttgggAgttgggagcctggatcaaga	14	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61902562	T	T	61902562	1	4	4	0	1	0	0	0	0	0	0	0	6149	319	11	5		5	FTSJ3	17	61902562	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	333919	61902562	19292648	2770	4794											
GH1	2688	broad.mit.edu	37	chr17	61994595	61994595	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttattaggacaaggctgGtgggcactggagtggcaact	14	6	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61994595	T	T	61994595	1	4	4	0	1	0	0	0	0	0	0	0	6431	1276	44	3		3	GH1	17	61994595	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	92033	61994595	19200615	2771	4795											
SCN4A	6329	broad.mit.edu	37	chr17	62025295	62025295	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaggcgttggtgaagtaCaccttaaagccgtaggccac	11	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62025295	A	A	62025295	2	1	4	1	0	0	0	0	0	0	0	1	14033	465	17	3		3	SCN4A	17	62025295	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	30700	62025295	19169915	2772	4796											
RGS9	8787	broad.mit.edu	37	chr17	63156638	63156638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttttaaagcgtggtttccCtggtttcttttgcagacacc	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63156638	A	A	63156638	1	1	4	0	1	0	0	0	0	0	0	0	13422	696	24	2		2	RGS9	17	63156638	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1131343	63156638	18038572	2773	4797											
CCDC46	201134	broad.mit.edu	37	chr17	63957745	63957745	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcagagaagcttcagagtTaaaatataaaagagctaggc	10	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63957745	C	C	63957745	1	2	4	0	1	0	0	0	0	0	0	0	2845	1769	61	5		5	CCDC46	17	63957745	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	801107	63957745	17237465	2774	4798											
BPTF	2186	broad.mit.edu	37	chr17	65940369	65940369	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtactcccaggcccaggccAgcagctaatgcaagctgcaa	10	14	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65940369	T	T	65940369	3	4	4	1	0	0	0	0	1	0	0	0	1504	188	7	5	7045	5	BPTF	17	65940369	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1982624	65940369	15254841	2775	4799											
SLC16A6	9120	broad.mit.edu	37	chr17	66267479	66267479	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttcttttcgcttggcctGgggctggtcttcaccaggac	12	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66267479	T	T	66267479	2	4	4	1	0	0	0	0	0	0	0	1	14525	1335	47	2		2	SLC16A6	17	66267479	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	327110	66267479	14927731	2776	4800											
ABCA9	10350	broad.mit.edu	37	chr17	66980199	66980199	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttggacaggcactcacctCagccttcctgacaccatgat	8	15	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66980199	A	A	66980199	2	1	4	1	0	0	0	0	0	0	0	1	39	813	29	3		3	ABCA9	17	66980199	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	712720	66980199	14215011	2777	4801											
ABCA9	10350	broad.mit.edu	37	chr17	67016492	67016492	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttaaatttatttttagttCacagacaaaacaaatctgaa	3	6	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67016492	A	A	67016492	1	1	4	0	1	0	0	0	0	0	0	0	39	841	29	3		3	ABCA9	17	67016492	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	36293	67016492	14178718	2778	4802											
ABCA10	10349	broad.mit.edu	37	chr17	67197468	67197468	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtctcttaaattttactgTtgatagtatcaacagtattc	6	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67197468	C	C	67197468	1	2	4	0	1	0	0	0	0	0	0	0	29	1740	60	5		5	ABCA10	17	67197468	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	180976	67197468	13997742	2779	4803											
KCNJ2	3759	broad.mit.edu	37	chr17	68171958	68171958	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtttgacagtggaatcgatCgtatatttctggtgtcccca	11	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68171958	G	G	68171958	3	3	4	1	0	0	0	0	1	0	0	0	8121	884	31	4	780	4	KCNJ2	17	68171958	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	974490	68171958	13023252	2780	4804											
CDC42EP4	23580	broad.mit.edu	37	chr17	71281533	71281533	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggggcagggagaagatgCagccaagagctcccggtggc	19	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71281533	A	A	71281533	1	1	4	0	1	0	0	0	0	0	0	0	3108	725	25	3		3	CDC42EP4	17	71281533	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	3109575	71281533	9913677	2781	4805											
SDK2	54549	broad.mit.edu	37	chr17	71335117	71335117	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgtgtcagtggccccGtagggacaggccattgtggt	17	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71335117	A	A	71335117	1	1	4	0	1	0	0	0	0	0	0	0	14082	1160	40	4		4	SDK2	17	71335117	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	53584	71335117	9860093	2782	4806											
SDK2	54549	broad.mit.edu	37	chr17	71348585	71348585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgctgtggggctcccCcactccctcagcccccaggc	11	20	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71348585	A	A	71348585	1	1	4	0	1	0	0	0	0	0	0	0	14082	638	22	2		2	SDK2	17	71348585	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	13468	71348585	9846625	2783	4807											
TTYH2	94015	broad.mit.edu	37	chr17	72218757	72218757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcagcaccactcctgctGcatcacctggacggccgtgg	11	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72218757	T	T	72218757	3	4	4	1	0	0	0	0	1	0	0	0	16866	1319	46	3	269	3	TTYH2	17	72218757	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	870172	72218757	8976453	2784	4808											
CD300LD	100131439	broad.mit.edu	37	chr17	72578327	72578327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatggggccaggcctgtGcgaaagtggtgggacctggc	19	10	0	0	rs141286243	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72578327	T	T	72578327	1	4	4	0	1	0	0	0	0	0	0	0	3030	1334	46	3		3	CD300LD	17	72578327	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	359570	72578327	8616883	2785	4809											
CD300E	342510	broad.mit.edu	37	chr17	72608712	72608712	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagtccacaggtctctcGcatccagtctgaaaggttga	10	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72608712	T	T	72608712	1	4	4	0	1	0	0	0	0	0	0	0	3028	1101	38	3		3	CD300E	17	72608712	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	30385	72608712	8586498	2786	4810											
GRIN2C	2905	broad.mit.edu	37	chr17	72851274	72851274	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaccagaacaagcacaggGagagagacagaggtttggag	16	6	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72851274	T	T	72851274	1	4	4	0	1	0	0	0	0	0	0	0	6847	1189	41	3		3	GRIN2C	17	72851274	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	242562	72851274	8343936	2787	4811											
LLGL2	3993	broad.mit.edu	37	chr17	73569076	73569076	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttggccatgggcatgaacAaccaccccacgcccccaggt	10	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73569076	T	T	73569076	1	4	4	0	1	0	0	0	0	0	0	0	8908	145	5	5		5	LLGL2	17	73569076	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	717802	73569076	7626134	2788	4812											
LLGL2	3993	broad.mit.edu	37	chr17	73571096	73571096	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcttccacaatgcagctGctctgggcctcgggagagga	14	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73571096	T	T	73571096	1	4	4	0	1	0	0	0	0	0	0	0	8908	1334	46	3		3	LLGL2	17	73571096	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	2020	73571096	7624114	2789	4813											
ITGB4	3691	broad.mit.edu	37	chr17	73727093	73727093	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcccttctggggcagggcAggaagtgggcagggtgggca	21	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73727093	C	C	73727093	1	2	4	0	1	0	0	0	0	0	0	0	7967	203	7	5		5	ITGB4	17	73727093	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	155997	73727093	7468117	2790	4814											
EVPL	2125	broad.mit.edu	37	chr17	74015578	74015578	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaccaattcccagaagtgGggtgcagacggcctggtggg	17	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74015578	A	A	74015578	1	1	4	0	1	0	0	0	0	0	0	0	5334	1247	43	4		4	EVPL	17	74015578	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	288485	74015578	7179632	2791	4815											
AFMID	125061	broad.mit.edu	37	chr17	76202119	76202119	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctgacccagaaggacaaCgtgctcacccaggtggggcc	12	13	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76202119	T	T	76202119	2	4	4	1	0	0	0	0	0	0	0	1	362	535	19	4		4	AFMID	17	76202119	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2186541	76202119	4993091	2792	4816											
USP36	57602	broad.mit.edu	37	chr17	76794348	76794348	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcgcccacaccacacacaCcacccaacacacatgtgcca	4	21	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76794348	T	T	76794348	1	4	4	0	1	0	0	0	0	0	0	0	17194	522	18	4		4	USP36	17	76794348	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	592229	76794348	4400862	2793	4817											
C1QTNF1	114897	broad.mit.edu	37	chr17	77042887	77042887	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagcagaatggctccctcGggacagggagcagaggcagg	18	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77042887	A	A	77042887	1	1	4	0	1	0	0	0	0	0	0	0	1982	1131	39	4		4	C1QTNF1	17	77042887	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	248539	77042887	4152323	2794	4818											
TBC1D16	125058	broad.mit.edu	37	chr17	77923505	77923505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggtgggccgggctggccCcggcggttaccttttctgct	17	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77923505	A	A	77923505	1	1	4	0	1	0	0	0	0	0	0	0	15724	638	22	2		2	TBC1D16	17	77923505	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	880618	77923505	3271705	2795	4819											
RNF213	57674	broad.mit.edu	37	chr17	78328162	78328162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacggacttcccttcctgGgggaggtgggacagaagcac	14	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78328162	T	T	78328162	1	4	4	0	1	0	0	0	0	0	0	0	13588	1247	43	2		2	RNF213	17	78328162	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	404657	78328162	2867048	2796	4820											
RNF213	57674	broad.mit.edu	37	chr17	78363553	78363553	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcctgtgtggagagcactCaggctccctggtgcacgaca	13	12	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78363553	G	G	78363553	1	3	4	0	1	0	0	0	0	0	0	0	13588	841	29	4		4	RNF213	17	78363553	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	35391	78363553	2831657	2797	4821											
AZI1	22994	broad.mit.edu	37	chr17	79177294	79177294	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctccccagaagaccttacTtgagggagggggcagtctgg	15	11	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79177294	C	C	79177294	3	2	4	1	0	0	0	0	1	0	0	0	1245	1623	56	5	2697	5	AZI1	17	79177294	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	813741	79177294	2017916	2798	4822											
SLC38A10	124565	broad.mit.edu	37	chr17	79244680	79244680	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctccccagcccagacccaTcagccctcgtccaggccacc	6	23	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79244680	A	A	79244680	1	1	4	0	1	0	0	0	0	0	0	0	14716	1450	50	5		5	SLC38A10	17	79244680	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	67386	79244680	1950530	2799	4823											
C17orf70	80233	broad.mit.edu	37	chr17	79514829	79514829	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacacggtgggtgtggagcCacgccagagagtgagccccc	16	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79514829	T	T	79514829	1	4	4	0	1	0	0	0	0	0	0	0	1893	609	21	4		4	C17orf70	17	79514829	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	270149	79514829	1680381	2800	4824											
EPB41L3	23136	broad.mit.edu	37	chr18	5406747	5406747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcgggtaaacagaataCgagtctgaccacaaacctga	11	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5406747	A	A	5406747	1	1	4	0	1	0	0	0	0	0	0	0	5196	551	19	3		3	EPB41L3	18	5406747	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		5406747	72670501	2801	4825											
LAMA1	284217	broad.mit.edu	37	chr18	6961756	6961756	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagctaacactccggatGggctggacacagaggagatg	15	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6961756	T	T	6961756	2	4	4	1	0	0	0	0	0	0	0	1	8677	1335	47	2		2	LAMA1	18	6961756	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1555009	6961756	71115492	2802	4826											
LAMA1	284217	broad.mit.edu	37	chr18	6966160	6966160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttactgtgccgtatgaacCcaggtagagaagaagtccat	10	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6966160	A	A	6966160	3	1	4	1	0	0	0	0	1	0	0	0	8677	623	22	2	2251	2	LAMA1	18	6966160	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4404	6966160	71111088	2803	4827											
LAMA1	284217	broad.mit.edu	37	chr18	7079972	7079972	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggttctgggctcacctAcctgtcttaagtccagagtg	10	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7079972	G	G	7079972	5	3	4	1	0	0	0	0	0	0	1	0	8677	405	14	5	9124	5	LAMA1	18	7079972	Splice_Site	SNP	A	TCGA-05-4382-01A-01D-1265-08	113812	7079972	70997276	2804	4828											
KIAA0802	23255	broad.mit.edu	37	chr18	8824925	8824925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgacaggaccgaggtgggGcgggcagggcacgaggacag	21	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8824925	T	T	8824925	2	4	4	1	0	0	0	0	0	0	0	1	8264	1190	42	3		3	KIAA0802	18	8824925	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1744953	8824925	69252323	2805	4829											
KIAA0802	23255	broad.mit.edu	37	chr18	8829122	8829122	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctaaacccaggaacagattGataaggccagagactcatct	8	11	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8829122	C	C	8829122	1	2	4	0	1	0	0	0	0	0	0	0	8264	1305	45	4		4	KIAA0802	18	8829122	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4197	8829122	69248126	2806	4830											
NAPG	8774	broad.mit.edu	37	chr18	10548349	10548349	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgactatgtagctgcAgaaagatgtgtccgggagag	14	5	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10548349	G	G	10548349	2	3	4	1	0	0	0	0	0	0	0	1	10258	175	7	5		5	NAPG	18	10548349	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	1719227	10548349	67528899	2807	4831											
GNAL	2774	broad.mit.edu	37	chr18	11867257	11867257	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgctctctcaagaaaatagGagtgaattctaacactcagc	7	9	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11867257	T	T	11867257	1	4	4	0	1	0	0	0	0	0	0	0	6571	1189	41	3		3	GNAL	18	11867257	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1318908	11867257	66209991	2808	4832											
SLMO1	10650	broad.mit.edu	37	chr18	12427200	12427202	+	Intron	DEL	TTC	-	-													tcagggctggtcagccccttTtcttcttgctcttttgcagg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12427202	-	-	12427200	6	5	4	0	1	1	0	1	0	0	0	0	14864	1856	64	0		0	SLMO1	18	12427200	Intron	DEL	TTC	TCGA-05-4382-01A-01D-1265-08	559943	12427200	65650048	2809	4833											
ZNF521	25925	broad.mit.edu	37	chr18	22806833	22806833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggacacggaggtatagCccaccgtgaccagggaaggg	15	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22806833	A	A	22806833	3	1	4	1	0	0	0	0	1	0	0	0	18092	739	26	3	2906	3	ZNF521	18	22806833	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	10379633	22806833	55270415	2810	4834											
ZNF521	25925	broad.mit.edu	37	chr18	22807008	22807008	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcatgagggaggtctcctCtacgaagagctcgtggcagt	14	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22807008	A	A	22807008	4	1	4	1	0	0	0	0	0	1	0	0	18092	922	32	3	3081	3	ZNF521	18	22807008	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	175	22807008	55270240	2811	4835											
ZNF521	25925	broad.mit.edu	37	chr18	22807248	22807248	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtaaggaactagaggacaGaaacccacggcgacaaatgg	13	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22807248	T	T	22807248	3	4	4	1	0	0	0	0	1	0	0	0	18092	933	33	3	3321	3	ZNF521	18	22807248	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	240	22807248	55270000	2812	4836											
ZNF521	25925	broad.mit.edu	37	chr18	22902179	22902179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatcaacactgtaagtatgGggtttaaagacaggttcttt	9	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22902179	A	A	22902179	1	1	4	0	1	0	0	0	0	0	0	0	18092	1247	43	4		4	ZNF521	18	22902179	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	94931	22902179	55175069	2813	4837											
ZNF521	25925	broad.mit.edu	37	chr18	22907627	22907627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattattttgtgctttctGggctctagatatgcattcta	7	7	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22907627	T	T	22907627	1	4	4	0	1	0	0	0	0	0	0	0	18092	1363	47	2		2	ZNF521	18	22907627	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5448	22907627	55169621	2814	4838											
CDH2	1000	broad.mit.edu	37	chr18	25532249	25532249	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggacccagcagtggagccActgccttcatagtcaaacac	9	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25532249	T	T	25532249	3	4	4	1	0	0	0	0	1	0	0	0	3135	156	6	5	135	5	CDH2	18	25532249	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2624622	25532249	52544999	2815	4839											
CDH2	1000	broad.mit.edu	37	chr18	25585756	25585756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcttgctcatataacagGgctggttacaccatactttc	6	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25585756	T	T	25585756	1	4	4	0	1	0	0	0	0	0	0	0	3135	1247	43	2		2	CDH2	18	25585756	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	53507	25585756	52491492	2816	4840											
DSC2	1824	broad.mit.edu	37	chr18	28662236	28662236	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaactccttcattggtttTggcatctgttacaattttaa	6	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28662236	A	A	28662236	4	1	4	1	0	0	0	0	0	1	0	0	4806	1821	63	5	1546	5	DSC2	18	28662236	Nonsense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	3076480	28662236	49415012	2817	4841											
DSG1	1828	broad.mit.edu	37	chr18	28916564	28916564	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggacacaggtagaccttCaacgactgttaggtaagaat	10	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28916564	T	T	28916564	3	4	4	1	0	0	0	0	1	0	0	0	4816	838	29	4	1287	4	DSG1	18	28916564	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	254328	28916564	49160684	2818	4842											
DSG1	1828	broad.mit.edu	37	chr18	28918286	28918286	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaatacaggtatgtaaTgggaaataatccagctgacc	8	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28918286	C	C	28918286	3	2	4	1	0	0	0	0	1	0	0	0	4816	1464	51	5	1312	5	DSG1	18	28918286	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1722	28918286	49158962	2819	4843											
DSG4	147409	broad.mit.edu	37	chr18	28971189	28971189	+	Intron	DEL	C	-	-													aacttcagtaagtttgtattCttatcttcctttttccataa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28971189	-	-	28971189	6	5	4	0	1	1	0	1	0	0	0	0	4819	928	32	0		0	DSG4	18	28971189	Intron	DEL	C	TCGA-05-4382-01A-01D-1265-08	52903	28971189	49106059	2820	4844											
DSG3	1830	broad.mit.edu	37	chr18	29055792	29055792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccaaatttaaaaaacttGcagagataagccttggtgtt	8	7	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29055792	T	T	29055792	3	4	4	1	0	0	0	0	1	0	0	0	4818	1319	46	3	2631	3	DSG3	18	29055792	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	84603	29055792	49021456	2821	4845											
DSG2	1829	broad.mit.edu	37	chr18	29125888	29125888	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggtcaaaaaatagatAtaaataaggaaattgagcag	10	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29125888	T	T	29125888	3	4	4	1	0	0	0	0	1	0	0	0	4817	449	16	5	2597	5	DSG2	18	29125888	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	70096	29125888	48951360	2822	4846											
DSG2	1829	broad.mit.edu	37	chr18	29125986	29125986	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaactatggttaattcagaGaatacctactcctctggcag	7	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29125986	C	C	29125986	3	2	4	1	0	0	0	0	1	0	0	0	4817	933	33	4	2695	4	DSG2	18	29125986	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	98	29125986	48951262	2823	4847											
KLHL14	57565	broad.mit.edu	37	chr18	30350629	30350629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggggatgggagggagGggagcagggtggtggagcgg	29	2	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30350629	A	A	30350629	1	1	4	0	1	0	0	0	0	0	0	0	8441	1247	43	4		4	KLHL14	18	30350629	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1224643	30350629	47726619	2824	4848											
C18orf34	374864	broad.mit.edu	37	chr18	30926193	30926193	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctttctgcacagccaatgGgagttcttgaagtttccaga	9	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30926193	A	A	30926193	3	1	4	1	0	0	0	0	1	0	0	0	1920	1232	43	4	2023	4	C18orf34	18	30926193	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	575564	30926193	47151055	2825	4849											
C18orf34	374864	broad.mit.edu	37	chr18	30928890	30928890	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgacctctttcactggtgTagttacactccaatcttctt	5	11	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30928890	A	A	30928890	3	1	4	1	0	0	0	0	1	0	0	0	1920	1638	57	5	2246	5	C18orf34	18	30928890	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	2697	30928890	47148358	2826	4850											
ASXL3	80816	broad.mit.edu	37	chr18	31314266	31314266	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attcaatacattagcattttCtttttaggagagtttacccc	5	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31314266	G	G	31314266	1	3	4	0	1	0	0	0	0	0	0	0	1072	928	32	4		4	ASXL3	18	31314266	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	385376	31314266	46762982	2827	4851											
ASXL3	80816	broad.mit.edu	37	chr18	31325263	31325263	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggcagggactctggcaccActccaaatgagaaagcgaga	12	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31325263	T	T	31325263	2	4	4	1	0	0	0	0	0	0	0	1	1072	146	6	5		5	ASXL3	18	31325263	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	10997	31325263	46751985	2828	4852											
DTNA	1837	broad.mit.edu	37	chr18	32459515	32459515	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaattgtatctgctagAggttgggagtgaaacagaga	12	5	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32459515	T	T	32459515	3	4	4	1	0	0	0	0	1	0	0	0	4828	318	11	5	2077	5	DTNA	18	32459515	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1134252	32459515	45617733	2829	4853											
ELP2	55250	broad.mit.edu	37	chr18	33724961	33724961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccggtcatgaaaactggGtaaatgcagttcactggcaa	11	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33724961	T	T	33724961	3	4	4	1	0	0	0	0	1	0	0	0	5122	1261	44	3	890	3	ELP2	18	33724961	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1265446	33724961	44352287	2830	4854											
FHOD3	80206	broad.mit.edu	37	chr18	34092555	34092555	+	Intron	SNP	C	A	A													gccccagctgcaggggggatCtgggttcaccttcaggaact							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34092555	A	A	34092555	1	1	4	0	1	0	0	0	0	0	0	0	5940	928	32	3		3	FHOD3	18	34092555	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	367594	34092555	43984693	2831	4855	16	2									
FHOD3	80206	broad.mit.edu	37	chr18	34092557	34092557	+	Intron	SNP	G	T	T													cccagctgcaggggggatctGggttcaccttcaggaactta							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34092557	T	T	34092557	1	4	4	0	1	0	0	0	0	0	0	0	5940	1363	47	2		2	FHOD3	18	34092557	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2	34092557	43984691	2832	4856	16	2									
FHOD3	80206	broad.mit.edu	37	chr18	34322886	34322886	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccctgcccagcaattgctGatgaaggttgtacctcaggt	10	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34322886	A	A	34322886	1	1	4	0	1	0	0	0	0	0	0	0	5940	1305	45	4		4	FHOD3	18	34322886	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	230329	34322886	43754362	2833	4857											
PIK3C3	5289	broad.mit.edu	37	chr18	39637788	39637788	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatcaattgtgtgacatatCacctacccagttctttaaga	5	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39637788	T	T	39637788	1	4	4	0	1	0	0	0	0	0	0	0	12007	841	29	4		4	PIK3C3	18	39637788	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5314902	39637788	38439460	2834	4858											
SYT4	6860	broad.mit.edu	37	chr18	40853820	40853820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcgtcattttgatatatgGgtcagaggtcatcgactgct	11	7	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853820	T	T	40853820	3	4	4	1	0	0	0	0	1	0	0	0	15595	1232	43	2	715	2	SYT4	18	40853820	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1216032	40853820	37223428	2835	4859											
SETBP1	26040	broad.mit.edu	37	chr18	42643085	42643085	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggttcaagcggcgggagatcGaagccatccagtgcgaagtg	16	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42643085	C	C	42643085	3	2	4	1	0	0	0	0	1	0	0	0	14242	1059	37	4	4424	4	SETBP1	18	42643085	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1789265	42643085	35434163	2836	4860											
SLC14A2	8170	broad.mit.edu	37	chr18	43247780	43247780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcacttgcctacttcctGccccggttccatttcagaca	7	15	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43247780	T	T	43247780	1	4	4	0	1	0	0	0	0	0	0	0	14510	1334	46	3		3	SLC14A2	18	43247780	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	604695	43247780	34829468	2837	4861											
SLC14A2	8170	broad.mit.edu	37	chr18	43249357	43249357	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaatatcactgtgacttTgtacctggcagccacgggcc	9	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43249357	C	C	43249357	3	2	4	1	0	0	0	0	1	0	0	0	14510	1821	63	5	2181	5	SLC14A2	18	43249357	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1577	43249357	34827891	2838	4862											
HAUS1	115106	broad.mit.edu	37	chr18	43698210	43698210	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgccaatctctctagcaCtggttccaggtatctgaatg	8	14	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43698210	T	T	43698210	3	4	4	1	0	0	0	0	1	0	0	0	7031	565	20	4	279	4	HAUS1	18	43698210	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	448853	43698210	34379038	2839	4863											
ST8SIA5	29906	broad.mit.edu	37	chr18	44260275	44260275	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccccaggctgagccagtaGcgcgacacgttgaccaggta	12	14	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44260275	T	T	44260275	2	4	4	1	0	0	0	0	0	0	0	1	15353	958	34	3		3	ST8SIA5	18	44260275	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	562065	44260275	33816973	2840	4864											
ST8SIA5	29906	broad.mit.edu	37	chr18	44268653	44268653	+	Intron	DEL	C	-	-													aggaccgtgagtgagtcaggCaaaaccccagggacattgcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44268653	-	-	44268653	6	5	4	0	1	1	0	1	0	0	0	0	15353	725	25	0		0	ST8SIA5	18	44268653	Intron	DEL	C	TCGA-05-4382-01A-01D-1265-08	8378	44268653	33808595	2841	4865											
SMAD2	4087	broad.mit.edu	37	chr18	45368312	45368312	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaggagtacttgttacCgtctgccttctgtttaaaag	9	9	2	0	rs148531026		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45368312	A	A	45368312	2	1	4	1	0	0	0	0	0	0	0	1	14872	639	23	1		1	SMAD2	18	45368312	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1099659	45368312	32708936	2842	4866											
MEX3C	51320	broad.mit.edu	37	chr18	48702765	48702765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaacagctgtctggcaaaCtggacatgatggcgttctct	11	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48702765	A	A	48702765	3	1	4	1	0	0	0	0	1	0	0	0	9604	565	20	3	47	3	MEX3C	18	48702765	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3334453	48702765	29374483	2843	4867											
DCC	1630	broad.mit.edu	37	chr18	50742070	50742070	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagtacaggatagtggcttCcatgtgcagaaatgttctgg	13	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50742070	T	T	50742070	1	4	4	0	1	0	0	0	0	0	0	0	4315	870	30	4		4	DCC	18	50742070	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2039305	50742070	27335178	2844	4868											
DCC	1630	broad.mit.edu	37	chr18	50936982	50936982	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcaaaaggagtggggccActctctgatcctatcctctt	8	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50936982	C	C	50936982	2	2	4	1	0	0	0	0	0	0	0	1	4315	146	6	5		5	DCC	18	50936982	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	194912	50936982	27140266	2845	4869											
WDR7	23335	broad.mit.edu	37	chr18	54385314	54385314	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttttcctattcaagtaatCaaatggaggccttctgatga	7	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54385314	G	G	54385314	3	3	4	1	0	0	0	0	1	0	0	0	17447	816	29	4	1744	4	WDR7	18	54385314	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3448332	54385314	23691934	2846	4870											
WDR7	23335	broad.mit.edu	37	chr18	54688166	54688166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttgagcctacctgccgGccctccttcctgtcctccct	7	20	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54688166	T	T	54688166	1	4	4	0	1	0	0	0	0	0	0	0	17447	1218	42	3		3	WDR7	18	54688166	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	302852	54688166	23389082	2847	4871											
CCBE1	147372	broad.mit.edu	37	chr18	57107102	57107102	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgagaaggacaaagggcCctggctaacaagagtccagg	13	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57107102	T	T	57107102	1	4	4	0	1	0	0	0	0	0	0	0	2757	638	22	4		4	CCBE1	18	57107102	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2418936	57107102	20970146	2848	4872											
CCBE1	147372	broad.mit.edu	37	chr18	57115198	57115198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgatcaccctcctgtgCcctcttccacactcaccggg	8	17	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57115198	A	A	57115198	1	1	4	0	1	0	0	0	0	0	0	0	2757	754	26	3		3	CCBE1	18	57115198	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	8096	57115198	20962050	2849	4873											
CDH20	28316	broad.mit.edu	37	chr18	59170182	59170182	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacaaagtcatttctatcctCcaggtgtaattaggacagcg	8	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59170182	A	A	59170182	1	1	4	0	1	0	0	0	0	0	0	0	3136	870	30	3		3	CDH20	18	59170182	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2054984	59170182	18907066	2850	4874											
CDH20	28316	broad.mit.edu	37	chr18	59203752	59203752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgatagaagcagtgaccCtggaagatttttctatgttg	10	6	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59203752	A	A	59203752	3	1	4	1	0	0	0	0	1	0	0	0	3136	681	24	2	1324	2	CDH20	18	59203752	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	33570	59203752	18873496	2851	4875											
CDH20	28316	broad.mit.edu	37	chr18	59206354	59206354	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agattctatgaagcttttgtCtgtgagaacgccaaggcagg	12	7	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59206354	A	A	59206354	2	1	4	1	0	0	0	0	0	0	0	1	3136	900	32	3		3	CDH20	18	59206354	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2602	59206354	18870894	2852	4876											
CDH20	28316	broad.mit.edu	37	chr18	59217507	59217507	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggagtcctgccagtgcGcactcagacatttgttcatt	10	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59217507	A	A	59217507	1	1	4	0	1	0	0	0	0	0	0	0	3136	1102	38	4		4	CDH20	18	59217507	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	11153	59217507	18859741	2853	4877											
ZCCHC2	54877	broad.mit.edu	37	chr18	60241759	60241759	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcttacagttcagaggctAaagttgccaccaccacaggg	9	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60241759	G	G	60241759	2	3	4	1	0	0	0	0	0	0	0	1	17713	349	13	5		5	ZCCHC2	18	60241759	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	1024252	60241759	17835489	2854	4878											
PHLPP1	23239	broad.mit.edu	37	chr18	60506077	60506077	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctctggaccccaaagcCagacttactacatttgcttt	6	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60506077	T	T	60506077	4	4	4	1	0	0	0	0	0	1	0	0	11949	595	21	4	1844	4	PHLPP1	18	60506077	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	264318	60506077	17571171	2855	4879											
PHLPP1	23239	broad.mit.edu	37	chr18	60570143	60570143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatattagggtgtgccCatttacttatagcattgcag	8	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60570143	A	A	60570143	1	1	4	0	1	0	0	0	0	0	0	0	11949	609	21	2		2	PHLPP1	18	60570143	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	64066	60570143	17507105	2856	4880											
PHLPP1	23239	broad.mit.edu	37	chr18	60609095	60609095	+	Frame_Shift_Del	DEL	C	-	-													gtgcccttgttaacgggacaCccccatttgaagatccttca							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60609095	-	-	60609095	7	5	4	1	0	1	0	1	0	0	0	0	11949	506	18	0	3147	0	PHLPP1	18	60609095	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	38952	60609095	17468153	2857	4881											
PHLPP1	23239	broad.mit.edu	37	chr18	60639711	60639711	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggcctggagcaggaggatGagtggactcagcacagaagt	17	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60639711	A	A	60639711	1	1	4	0	1	0	0	0	0	0	0	0	11949	1305	45	4		4	PHLPP1	18	60639711	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	30616	60639711	17437537	2858	4882											
SERPINB12	89777	broad.mit.edu	37	chr18	61223253	61223253	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgaccttagttttccaGttcttaatagcatactgaat	5	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61223253	T	T	61223253	1	4	4	0	1	0	0	0	0	0	0	0	14212	1044	36	3		3	SERPINB12	18	61223253	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	583542	61223253	16853995	2859	4883											
SERPINB12	89777	broad.mit.edu	37	chr18	61228253	61228253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttctcaggagagtctcaCtcctaactacgagcatcact	7	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61228253	A	A	61228253	1	1	4	0	1	0	0	0	0	0	0	0	14212	580	20	3		3	SERPINB12	18	61228253	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	5000	61228253	16848995	2860	4884											
SERPINB12	89777	broad.mit.edu	37	chr18	61234147	61234147	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcggaaaggtcactacgatCttgggtggagtttaatgcca	12	8	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61234147	T	T	61234147	3	4	4	1	0	0	0	0	1	0	0	0	14212	913	32	4	1147	4	SERPINB12	18	61234147	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	5894	61234147	16843101	2861	4885											
SERPINB4	6318	broad.mit.edu	37	chr18	61307106	61307106	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgactgatcgttaattattGacccaaatccctgcttgaga	8	9	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61307106	T	T	61307106	1	4	4	0	1	0	0	0	0	0	0	0	14216	1305	45	3		3	SERPINB4	18	61307106	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	72959	61307106	16770142	2862	4886											
SERPINB7	8710	broad.mit.edu	37	chr18	61463708	61463708	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcttttgtacatacaaGgaacagctcctcctagttca	8	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61463708	C	C	61463708	1	2	4	0	1	0	0	0	0	0	0	0	14219	1015	35	4		4	SERPINB7	18	61463708	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	156602	61463708	16613540	2863	4887											
SERPINB7	8710	broad.mit.edu	37	chr18	61471509	61471509	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttcagaatctaatggaatgGaccaatccaaggcgaatgac	9	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61471509	C	C	61471509	3	2	4	1	0	0	0	0	1	0	0	0	14219	1183	41	4	809	4	SERPINB7	18	61471509	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7801	61471509	16605739	2864	4888											
DOK6	220164	broad.mit.edu	37	chr18	67425125	67425125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggcaagtcactttaatGtaagaaagcagtgcctccat	9	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67425125	T	T	67425125	1	4	4	0	1	0	0	0	0	0	0	0	4741	1392	48	3		3	DOK6	18	67425125	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5953616	67425125	10652123	2865	4889											
CBLN2	147381	broad.mit.edu	37	chr18	70209226	70209226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgccctccagcacgatgGgctccgtgtcgttctgcgcc	11	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70209226	T	T	70209226	3	4	4	1	0	0	0	0	1	0	0	0	2731	1232	43	2	516	2	CBLN2	18	70209226	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2784101	70209226	7868022	2866	4890											
MBP	4155	broad.mit.edu	37	chr18	74778254	74778254	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatatctgcgtcacctacCgaacacttcgttgtcctctg	7	15	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74778254	A	A	74778254	4	1	4	1	0	0	0	0	0	1	0	0	9452	666	23	1	903	1	MBP	18	74778254	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4569028	74778254	3298994	2867	4891											
GALR1	2587	broad.mit.edu	37	chr18	74963220	74963220	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgagggagggcggagggccgGtgggggccctggggtctcag	24	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74963220	C	C	74963220	1	2	4	0	1	0	0	0	0	0	0	0	6289	1276	44	4		4	GALR1	18	74963220	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	184966	74963220	3114028	2868	4892											
SALL3	27164	broad.mit.edu	37	chr18	76753279	76753279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctgcgccaaggtcttcGgcagcgacagcgcgctccag	13	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76753279	T	T	76753279	3	4	4	1	0	0	0	0	1	0	0	0	13923	1116	39	1	1294	1	SALL3	18	76753279	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1790059	76753279	1323969	2869	4893											
SALL3	27164	broad.mit.edu	37	chr18	76757283	76757283	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccagccgcccattcacGcggtttatcgaggataacaa	10	13	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76757283	T	T	76757283	2	4	4	1	0	0	0	0	0	0	0	1	13923	1074	38	3		3	SALL3	18	76757283	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	4004	76757283	1319965	2870	4894											
NFATC1	4772	broad.mit.edu	37	chr18	77210885	77210885	+	Intron	DEL	G	-	-													ggatgagggccagagggtctGgggggccaggcctttacgct							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77210885	-	-	77210885	6	5	4	0	1	1	0	1	0	0	0	0	10456	1363	47	0		0	NFATC1	18	77210885	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	453602	77210885	866363	2871	4895											
PALM	5064	broad.mit.edu	37	chr19	734062	734062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggatgagaagcgggtgcGtatgacgtcacccactgtgc	14	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	734062	T	T	734062	1	4	4	0	1	0	0	0	0	0	0	0	11502	1160	40	3		3	PALM	19	734062	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08		734062	58394921	2872	4896											
MUM1	84939	broad.mit.edu	37	chr19	1373031	1373031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccacttggggccagttgGgcagtgcctgctgctattga	15	10	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1373031	T	T	1373031	1	4	4	0	1	0	0	0	0	0	0	0	10079	1247	43	2		2	MUM1	19	1373031	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	638969	1373031	57755952	2873	4897											
UQCR11	10975	broad.mit.edu	37	chr19	1599497	1599497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtccaggatcagccgcCaatcggtggcccacaccagc	10	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1599497	A	A	1599497	3	1	4	1	0	0	0	0	1	0	0	0	17143	595	21	2	61	2	UQCR11	19	1599497	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	226466	1599497	57529486	2874	4898											
SGTA	6449	broad.mit.edu	37	chr19	2759331	2759331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaggaagacaaagctcCcagcgcatcattctctttca	7	12	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2759331	A	A	2759331	1	1	4	0	1	0	0	0	0	0	0	0	14338	638	22	2		2	SGTA	19	2759331	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1159834	2759331	56369652	2875	4899											
MATK	4145	broad.mit.edu	37	chr19	3778468	3778468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccacagcctctggacCtgcccggaacccagtgcctc	11	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3778468	A	A	3778468	1	1	4	0	1	0	0	0	0	0	0	0	9424	696	24	2		2	MATK	19	3778468	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1019137	3778468	55350515	2876	4900											
ZFR2	23217	broad.mit.edu	37	chr19	3816658	3816658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagcagcgatgagcagGgccctgaccttacctggagc	13	13	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3816658	T	T	3816658	1	4	4	0	1	0	0	0	0	0	0	0	17786	1247	43	2		2	ZFR2	19	3816658	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	38190	3816658	55312325	2877	4901											
CHAF1A	10036	broad.mit.edu	37	chr19	4433496	4433496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtcagcgggcagcatgtGcatcacccaattcatgaaga	11	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4433496	T	T	4433496	3	4	4	1	0	0	0	0	1	0	0	0	3342	1319	46	3	2683	3	CHAF1A	19	4433496	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	616838	4433496	54695487	2878	4902											
CCL25	6370	broad.mit.edu	37	chr19	8127168	8127168	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggatctttctccgataaaaCcgtcgccctacagacccagc	7	16	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8127168	A	A	8127168	1	1	4	0	1	0	0	0	0	0	0	0	2925	522	18	3		3	CCL25	19	8127168	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	3693672	8127168	51001815	2879	4903											
FBN3	84467	broad.mit.edu	37	chr19	8196580	8196580	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccatagcaggtgctgcgCacgtgggtgtccacgcacac	13	15	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8196580	A	A	8196580	2	1	4	1	0	0	0	0	0	0	0	1	5761	697	25	3		3	FBN3	19	8196580	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	69412	8196580	50932403	2880	4904											
FBN3	84467	broad.mit.edu	37	chr19	8201467	8201467	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggctggccccgccccagTctggagcctgggcttcacct	13	16	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8201467	A	A	8201467	1	1	4	0	1	0	0	0	0	0	0	0	5761	1682	58	5		5	FBN3	19	8201467	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4887	8201467	50927516	2881	4905											
ACTL9	284382	broad.mit.edu	37	chr19	8807930	8807930	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacggagaaattcctggtGggctgggcagccaccaccac	12	13	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8807930	T	T	8807930	2	4	4	1	0	0	0	0	0	0	0	1	203	1335	47	2		2	ACTL9	19	8807930	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	606463	8807930	50321053	2882	4906											
MUC16	94025	broad.mit.edu	37	chr19	9018138	9018138	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctaaagtctcacctgagCaaggtcagtctgcagccaga	9	12	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9018138	G	G	9018138	3	3	4	1	0	0	0	0	1	0	0	0	10067	709	25	4	5963	4	MUC16	19	9018138	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	210208	9018138	50110845	2883	4907											
MUC16	94025	broad.mit.edu	37	chr19	9018239	9018239	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgagtagtggggctaaGgtgtgtgtgtgtcggggcag	22	3	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9018239	A	A	9018239	1	1	4	0	1	0	0	0	0	0	0	0	10067	1015	35	4		4	MUC16	19	9018239	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	101	9018239	50110744	2884	4908											
MUC16	94025	broad.mit.edu	37	chr19	9056877	9056877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaaggtgagtggacccaGgagaagaaggtgtatttgtt	15	3	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9056877	T	T	9056877	3	4	4	1	0	0	0	0	1	0	0	0	10067	1000	35	2	13282	2	MUC16	19	9056877	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	38638	9056877	50072106	2885	4909											
MUC16	94025	broad.mit.edu	37	chr19	9065903	9065903	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctccacattggacgctgcTgtgtttgtggaaggatgcac	12	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9065903	A	A	9065903	2	1	4	1	0	0	0	0	0	0	0	1	10067	1567	55	5		5	MUC16	19	9065903	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	9026	9065903	50063080	2886	4910											
ZNF317	57693	broad.mit.edu	37	chr19	9269576	9269576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaacgcccagtggtGtgacgatggtaagatttccg	15	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9269576	T	T	9269576	3	4	4	1	0	0	0	0	1	0	0	0	17961	1377	48	3	478	3	ZNF317	19	9269576	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	203673	9269576	49859407	2887	4911											
OR7E24	26648	broad.mit.edu	37	chr19	9362498	9362498	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaagccttctccacctgtgGctctcacctggcagttgttt	8	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9362498	C	C	9362498	3	2	4	1	0	0	0	0	1	0	0	0	11315	1203	42	4	781	4	OR7E24	19	9362498	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	92922	9362498	49766485	2888	4912											
ZNF426	79088	broad.mit.edu	37	chr19	9643518	9643518	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttgttcttcatgaacactCaccttggagaactcctccct	6	13	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9643518	G	G	9643518	1	3	4	0	1	0	0	0	0	0	0	0	18027	841	29	4		4	ZNF426	19	9643518	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	281020	9643518	49485465	2889	4913											
COL5A3	50509	broad.mit.edu	37	chr19	10099904	10099904	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacagtcccttccacattcTaagagccctcatctctctcc	4	17	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10099904	C	C	10099904	1	2	4	0	1	0	0	0	0	0	0	0	3730	1537	53	5		5	COL5A3	19	10099904	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	456386	10099904	49029079	2890	4914											
DNM2	1785	broad.mit.edu	37	chr19	10934371	10934371	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttgggttcctgatcaGtcagaaagacccctagagcc	12	10	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934371	A	A	10934371	1	1	4	0	1	0	0	0	0	0	0	0	4712	1044	36	4		4	DNM2	19	10934371	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	834467	10934371	48194612	2891	4915											
ZNF491	126069	broad.mit.edu	37	chr19	11917808	11917808	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtacattcgaatacatggaaGgactcacactggtgagaaac	10	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11917808	C	C	11917808	3	2	4	1	0	0	0	0	1	0	0	0	18069	1000	35	4	1042	4	ZNF491	19	11917808	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	983437	11917808	47211175	2892	4916											
ZNF700	90592	broad.mit.edu	37	chr19	12060814	12060814	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgcgaaaaagcattctgtAaattctcttcttttcaaata	4	7	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12060814	G	G	12060814	3	3	4	1	0	0	0	0	1	0	0	0	18231	363	13	5	1989	5	ZNF700	19	12060814	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	143006	12060814	47068169	2893	4917											
ZNF763	284390	broad.mit.edu	37	chr19	12087964	12087964	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctggaaactttcaggAacctgacctctataggtaag	10	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12087964	T	T	12087964	3	4	4	1	0	0	0	0	1	0	0	0	18266	246	9	5	130	5	ZNF763	19	12087964	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	27150	12087964	47041019	2894	4918											
CLEC17A	388512	broad.mit.edu	37	chr19	14694031	14694031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggtaaggccccggccaGgctggggctggggcctaggt	18	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14694031	T	T	14694031	1	4	4	0	1	0	0	0	0	0	0	0	3533	1015	35	2		2	CLEC17A	19	14694031	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2606067	14694031	44434952	2895	4919											
CLEC17A	388512	broad.mit.edu	37	chr19	14694178	14694178	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccctggaagggaccatggAggaggaggaggaggatgatg	19	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14694178	C	C	14694178	3	2	4	1	0	0	0	0	1	0	0	0	3533	304	11	5	59	5	CLEC17A	19	14694178	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	147	14694178	44434805	2896	4920											
EMR3	84658	broad.mit.edu	37	chr19	14765950	14765950	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctgattggtgagaagtgActcaaatttgtccacaatct	9	7	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14765950	T	T	14765950	3	4	4	1	0	0	0	0	1	0	0	0	5148	275	10	5	1581	5	EMR3	19	14765950	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	71772	14765950	44363033	2897	4921											
SLC1A6	6511	broad.mit.edu	37	chr19	15075228	15075228	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccatggaagggcatctagGgtgataacagtaatactaac	11	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15075228	T	T	15075228	1	4	4	0	1	0	0	0	0	0	0	0	14549	1247	43	2		2	SLC1A6	19	15075228	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	309278	15075228	44053755	2898	4922											
EPHX3	79852	broad.mit.edu	37	chr19	15341721	15341721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaacacagacacatgtcCctgcccccttgcacataagt	6	14	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15341721	T	T	15341721	1	4	4	0	1	0	0	0	0	0	0	0	5223	638	22	4		4	EPHX3	19	15341721	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	266493	15341721	43787262	2899	4923											
AKAP8	10270	broad.mit.edu	37	chr19	15483986	15483986	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccatcaagggagccccgCtcccgggctgggtctcggca	14	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15483986	T	T	15483986	2	4	4	1	0	0	0	0	0	0	0	1	457	796	28	4		4	AKAP8	19	15483986	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	142265	15483986	43644997	2900	4924											
CYP4F22	126410	broad.mit.edu	37	chr19	15651462	15651463	+	Missense_Mutation	DNP	CG	GA	GA													gcactgcgtcagcagggggcCgaggcctggcttaaggccaa					rs139163760		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	15651463	GA	GA	15651462	3	3	4	1	0	0	0	0	1	0	0	0	4222	639	23	4	895	4	CYP4F22	19	15651462	Missense_Mutation	DNP	CG	TCGA-05-4382-01A-01D-1265-08	167476	15651462	43477521	2901	4925											
CYP4F3	4051	broad.mit.edu	37	chr19	15763586	15763586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggttgctgtacaccctcgGgtgctgaagcagcccagaga	13	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15763586	T	T	15763586	1	4	4	0	1	0	0	0	0	0	0	0	4223	1247	43	2		2	CYP4F3	19	15763586	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	112124	15763586	43365397	2902	4926											
AP1M1	8907	broad.mit.edu	37	chr19	16338502	16338502	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaccgtctcaacacccacGtgagtgcgccaccctggggc	10	18	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16338502	T	T	16338502	5	4	4	1	0	0	0	0	0	0	1	0	736	1159	40	3	883	3	AP1M1	19	16338502	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	574916	16338502	42790481	2903	4927											
OCEL1	79629	broad.mit.edu	37	chr19	17339818	17339818	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcttttcctcttgcagCtccccctaccaggggtcgct	8	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17339818	G	G	17339818	1	3	4	0	1	0	0	0	0	0	0	0	10911	812	28	4		4	OCEL1	19	17339818	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	1001316	17339818	41789165	2904	4928											
JAK3	3718	broad.mit.edu	37	chr19	17937597	17937597	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgccctctgggtgagcagtGaaggcatgagtctcacaccc	12	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17937597	A	A	17937597	2	1	4	1	0	0	0	0	0	0	0	1	8009	1281	45	4		4	JAK3	19	17937597	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	597779	17937597	41191386	2905	4929											
RPL18A	6142	broad.mit.edu	37	chr19	17973501	17973501	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggggctgtggccgtgcccCtcaaagtgaatttggaggtt	17	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17973501	T	T	17973501	1	4	4	0	1	0	0	0	0	0	0	0	13676	696	24	4		4	RPL18A	19	17973501	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	35904	17973501	41155482	2906	4930											
SLC5A5	6528	broad.mit.edu	37	chr19	18004489	18004489	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagggtggggacagggtctCtgatggggtctctttttccc	15	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18004489	G	G	18004489	1	3	4	0	1	0	0	0	0	0	0	0	14782	928	32	4		4	SLC5A5	19	18004489	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	30988	18004489	41124494	2907	4931											
PDE4C	5143	broad.mit.edu	37	chr19	18329183	18329184	+	Missense_Mutation	DNP	GG	TT	TT													agcagcacatgcgtggactgGgccacgtcggcggcatgtag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	18329184	TT	TT	18329183	3	4	4	1	0	0	0	0	1	0	0	0	11735	1219	43	2	971	2	PDE4C	19	18329183	Missense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	324694	18329183	40799800	2908	4932											
UBA52	7311	broad.mit.edu	37	chr19	18685981	18685981	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggttctttccttgaaggGcagcctcctgcccaggcccc	12	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18685981	C	C	18685981	1	2	4	0	1	0	0	0	0	0	0	0	16957	1218	42	4		4	UBA52	19	18685981	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	356798	18685981	40443002	2909	4933											
TMEM59L	25789	broad.mit.edu	37	chr19	18731227	18731227	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctgcagcctctgaccCtggagcagcacaagggcttc	10	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18731227	T	T	18731227	2	4	4	1	0	0	0	0	0	0	0	1	16309	680	24	4		4	TMEM59L	19	18731227	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	45246	18731227	40397756	2910	4934											
KLHL26	55295	broad.mit.edu	37	chr19	18780069	18780069	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtagcccccaagaccccCgggaccctggcctgaccgca	12	18	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18780069	T	T	18780069	1	4	4	0	1	0	0	0	0	0	0	0	8452	667	23	4		4	KLHL26	19	18780069	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	48842	18780069	40348914	2911	4935											
SFRS14	10147	broad.mit.edu	37	chr19	19142077	19142077	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggctgggtgtggtggcTcacacctgtaatcccaggac	13	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19142077	A	A	19142077	1	1	4	0	1	0	0	0	0	0	0	0	14283	1566	54	5		5	SFRS14	19	19142077	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	362008	19142077	39986906	2912	4936											
MEF2B	100271849	broad.mit.edu	37	chr19	19258352	19258352	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccccagctacagtgcccaCttctcaaagaagcctttcct	6	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19258352	T	T	19258352	1	4	4	0	1	0	0	0	0	0	0	0	9549	580	20	4		4	MEF2B	19	19258352	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	116275	19258352	39870631	2913	4937											
CILP2	148113	broad.mit.edu	37	chr19	19655944	19655944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcttccgcatcaacctcGccaagcccaggccaggtgac	10	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19655944	T	T	19655944	3	4	4	1	0	0	0	0	1	0	0	0	3461	1087	38	3	2620	3	CILP2	19	19655944	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	397592	19655944	39473039	2914	4938											
ZNF486	90649	broad.mit.edu	37	chr19	20308560	20308560	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaagattcatacgggagaGaaaccctacaaatgtgaaga	11	6	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20308560	A	A	20308560	2	1	4	1	0	0	0	0	0	0	0	1	18066	933	33	4		4	ZNF486	19	20308560	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	652616	20308560	38820423	2915	4939											
ZNF431	170959	broad.mit.edu	37	chr19	21366002	21366002	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtggcaaagccttcaaccGgtcctcacaccttactacac	6	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21366002	C	C	21366002	3	2	4	1	0	0	0	0	1	0	0	0	18032	1116	39	4	914	4	ZNF431	19	21366002	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1057442	21366002	37762981	2916	4940											
ZNF493	284443	broad.mit.edu	37	chr19	21587848	21587848	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgaattttctttactttctCatttgaccttaattcaaatg	3	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21587848	T	T	21587848	1	4	4	0	1	0	0	0	0	0	0	0	18071	841	29	4		4	ZNF493	19	21587848	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	221846	21587848	37541135	2917	4941											
ZNF493	284443	broad.mit.edu	37	chr19	21607028	21607028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacaaatgtgaagaatgtGgcaaagcttttaaacgatct	8	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21607028	T	T	21607028	3	4	4	1	0	0	0	0	1	0	0	0	18071	1348	47	2	1644	2	ZNF493	19	21607028	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	19180	21607028	37521955	2918	4942											
ZNF208	7757	broad.mit.edu	37	chr19	22153619	22153619	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttatgtttactaaagacTgagaaccagctgaaggcttt	8	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22153619	A	A	22153619	1	1	4	0	1	0	0	0	0	0	0	0	17892	1595	55	5		5	ZNF208	19	22153619	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	546591	22153619	36975364	2919	4943											
ZNF676	163223	broad.mit.edu	37	chr19	22363680	22363680	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacattcttcacatttgtagGgcttctcttcagcatgaatt	6	10	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22363680	C	C	22363680	3	2	4	1	0	0	0	0	1	0	0	0	18210	1232	43	4	931	4	ZNF676	19	22363680	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	210061	22363680	36765303	2920	4944											
ZNF99	7652	broad.mit.edu	37	chr19	22939970	22939970	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctttatgtctagtaaggtgTgaggactgcttaaaagcttt	11	5	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22939970	A	A	22939970	2	1	4	1	0	0	0	0	0	0	0	1	18333	1683	59	5		5	ZNF99	19	22939970	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	576290	22939970	36189013	2921	4945											
ZNF99	7652	broad.mit.edu	37	chr19	22940130	22940130	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgaattatctcatgttttCtaagggctgagaaatgttta	8	4	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22940130	G	G	22940130	3	3	4	1	0	0	0	0	1	0	0	0	18333	913	32	4	919	4	ZNF99	19	22940130	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	160	22940130	36188853	2922	4946											
POP4	10775	broad.mit.edu	37	chr19	30099608	30099608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaagaggcgaatgactccGatgtccaggtcagttcttgg	13	8	2	3	rs144806266		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30099608	T	T	30099608	3	4	4	1	0	0	0	0	1	0	0	0	12347	1058	37	3	58	3	POP4	19	30099608	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7159478	30099608	29029375	2923	4947											
ZNF536	9745	broad.mit.edu	37	chr19	30935448	30935448	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaggcacacatcacggccGagtcggcccagggccagggc	15	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935448	T	T	30935448	4	4	4	1	0	0	0	0	0	1	0	0	18101	1059	37	3	981	3	ZNF536	19	30935448	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	835840	30935448	28193535	2924	4948											
ZNF536	9745	broad.mit.edu	37	chr19	31039574	31039574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtcctccatggagctcatGgcccttcatctccaggccaa	8	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039574	T	T	31039574	3	4	4	1	0	0	0	0	1	0	0	0	18101	1348	47	2	3058	2	ZNF536	19	31039574	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	104126	31039574	28089409	2925	4949											
ZNF536	9745	broad.mit.edu	37	chr19	31039763	31039763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactctgcttctgagaagatGgcccaaggtcagctcaagga	12	10	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039763	T	T	31039763	3	4	4	1	0	0	0	0	1	0	0	0	18101	1348	47	2	3247	2	ZNF536	19	31039763	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	189	31039763	28089220	2926	4950											
TSHZ3	57616	broad.mit.edu	37	chr19	31769068	31769068	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgctgggatagccccccCagctaggagtgccgttctgg	15	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31769068	T	T	31769068	4	4	4	1	0	0	0	0	0	1	0	0	16750	595	21	4	1618	4	TSHZ3	19	31769068	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	729305	31769068	27359915	2927	4951											
ANKRD27	84079	broad.mit.edu	37	chr19	33098606	33098606	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcgttcctggcacctgCgttggccccgtgcttcagca	12	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33098606	T	T	33098606	3	4	4	1	0	0	0	0	1	0	0	0	655	768	27	4	872	4	ANKRD27	19	33098606	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1329538	33098606	26030377	2928	4952											
CCDC123	84902	broad.mit.edu	37	chr19	33417013	33417013	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataatatgctgggtataccTacattcaaaatgtttttata	5	5	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33417013	A	A	33417013	1	1	4	0	1	0	0	0	0	0	0	0	2785	1537	53	5		5	CCDC123	19	33417013	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	318407	33417013	25711970	2929	4953											
WDR88	126248	broad.mit.edu	37	chr19	33663231	33663231	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacagcctgttttgtgacCgctggtttgctatttgtttt	9	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33663231	G	G	33663231	1	3	4	0	1	0	0	0	0	0	0	0	17462	667	23	4		4	WDR88	19	33663231	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	246218	33663231	25465752	2930	4954											
GPI	2821	broad.mit.edu	37	chr19	34884875	34884875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccgtcttgctggccctGctgggtatctggtacatcaa	11	14	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34884875	T	T	34884875	2	4	4	1	0	0	0	0	0	0	0	1	6676	1306	46	3		3	GPI	19	34884875	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1221644	34884875	24244108	2931	4955											
UBA2	10054	broad.mit.edu	37	chr19	34951384	34951384	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttttttgtagatagtgaaaGaaaaatttgctatggtagca	9	2	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34951384	T	T	34951384	4	4	4	1	0	0	0	0	0	1	0	0	16954	943	33	3	1465	3	UBA2	19	34951384	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	66509	34951384	24177599	2932	4956											
UBA2	10054	broad.mit.edu	37	chr19	34957912	34957912	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggagctcagccctccacCtccacaggtgagtatggccc	11	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34957912	G	G	34957912	2	3	4	1	0	0	0	0	0	0	0	1	16954	668	24	4		4	UBA2	19	34957912	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	6528	34957912	24171071	2933	4957											
ZNF792	126375	broad.mit.edu	37	chr19	35451811	35451812	+	Missense_Mutation	DNP	CG	AA	AA													aaagttttccagcatcacatCgcagtacaggagtctctgag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	35451812	AA	AA	35451811	3	1	4	1	0	0	0	0	1	0	0	0	18293	884	31	3	1789	3	ZNF792	19	35451811	Missense_Mutation	DNP	CG	TCGA-05-4382-01A-01D-1265-08	493899	35451811	23677172	2934	4958											
CD22	933	broad.mit.edu	37	chr19	35837280	35837280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttggagacggttgctcCggcagagctggccagagcca	17	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35837280	A	A	35837280	1	1	4	0	1	0	0	0	0	0	0	0	3015	667	23	1		1	CD22	19	35837280	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	385469	35837280	23291703	2935	4959											
GAPDHS	26330	broad.mit.edu	37	chr19	36027810	36027811	+	Missense_Mutation	DNP	CC	AA	AA													gggaggaaataaagccaccaCcgccaccactgcctcctcac							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36027811	AA	AA	36027810	3	1	4	1	0	0	0	0	1	0	0	0	6299	507	18	3	169	3	GAPDHS	19	36027810	Missense_Mutation	DNP	CC	TCGA-05-4382-01A-01D-1265-08	190530	36027810	23101173	2936	4960											
TMEM147	10430	broad.mit.edu	37	chr19	36038152	36038152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttatggagtgagttggGtggggtttagggctgggtcc	19	3	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36038152	T	T	36038152	1	4	4	0	1	0	0	0	0	0	0	0	16184	1276	44	3		3	TMEM147	19	36038152	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	10342	36038152	23090831	2937	4961											
ATP4A	495	broad.mit.edu	37	chr19	36050770	36050770	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggccatgaagaagaccatGgcccgcaggaaggtgtagcc	14	10	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36050770	A	A	36050770	2	1	4	1	0	0	0	0	0	0	0	1	1149	1335	47	4		4	ATP4A	19	36050770	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	12618	36050770	23078213	2938	4962											
TMEM149	79713	broad.mit.edu	37	chr19	36236460	36236460	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccatagactccccggtagGagttcttttaacagcgcatg	9	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36236460	T	T	36236460	1	4	4	0	1	0	0	0	0	0	0	0	16185	1189	41	3		3	TMEM149	19	36236460	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	185690	36236460	22892523	2939	4963											
KIRREL2	84063	broad.mit.edu	37	chr19	36350479	36350479	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctttgtctgccgggccCggagccaggccctgcccaca	11	19	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36350479	A	A	36350479	2	1	4	1	0	0	0	0	0	0	0	1	8396	643	23	1		1	KIRREL2	19	36350479	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	114019	36350479	22778504	2940	4964											
KIRREL2	84063	broad.mit.edu	37	chr19	36352122	36352122	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggctatcgggcctgcgGggcggcgccgcggaggctcg	21	13	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36352122	T	T	36352122	2	4	4	1	0	0	0	0	0	0	0	1	8396	1219	43	2		2	KIRREL2	19	36352122	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1643	36352122	22776861	2941	4965											
HCST	10870	broad.mit.edu	37	chr19	36394806	36394806	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgccgcagccccgcccaagGtgagggcggagatgggcggg	19	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36394806	T	T	36394806	5	4	4	1	0	0	0	0	0	0	1	0	7070	1275	44	3	252	3	HCST	19	36394806	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	42684	36394806	22734177	2942	4966											
CLIP3	25999	broad.mit.edu	37	chr19	36517911	36517911	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtcatgtcggtcagccCgtcacgatcgttcacatggc	11	13	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36517911	T	T	36517911	3	4	4	1	0	0	0	0	1	0	0	0	3566	652	23	4	1344	4	CLIP3	19	36517911	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	123105	36517911	22611072	2943	4967											
ZNF420	147923	broad.mit.edu	37	chr19	37580121	37580121	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaaacttcattcctaaCtgacctcactcaggaatgtg	6	12	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37580121	G	G	37580121	1	3	4	0	1	0	0	0	0	0	0	0	18024	580	20	4		4	ZNF420	19	37580121	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1062210	37580121	21548862	2944	4968											
SIPA1L3	23094	broad.mit.edu	37	chr19	38600700	38600700	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtcctttatcctgaatgaGagggaaccacaggaaggttt	11	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38600700	C	C	38600700	1	2	4	0	1	0	0	0	0	0	0	0	14444	957	33	4		4	SIPA1L3	19	38600700	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1020579	38600700	20528283	2945	4969											
FAM98C	147965	broad.mit.edu	37	chr19	38899416	38899416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgggcaacgttccagaccGggggggccgcccaaatgagc	15	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38899416	T	T	38899416	3	4	4	1	0	0	0	0	1	0	0	0	5715	1116	39	1	974	1	FAM98C	19	38899416	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	298716	38899416	20229567	2946	4970											
SIRT2	22933	broad.mit.edu	37	chr19	39371598	39371598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccaccgctccctccccCgcccccagcagcaaacctcc	6	25	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39371598	A	A	39371598	1	1	4	0	1	0	0	0	0	0	0	0	14451	667	23	1		1	SIRT2	19	39371598	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	472182	39371598	19757385	2947	4971											
PSMC4	5704	broad.mit.edu	37	chr19	40477037	40477037	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagaagcctcctcagcCagggacttccgttgtcgtca	9	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40477037	A	A	40477037	1	1	4	0	1	0	0	0	0	0	0	0	12795	609	21	2		2	PSMC4	19	40477037	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	1105439	40477037	18651946	2948	4972											
CEACAM5	1048	broad.mit.edu	37	chr19	42221645	42221645	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgacccagtcatcctgaaTgtcctctgtgagtatcttct	8	12	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42221645	G	G	42221645	3	3	4	1	0	0	0	0	1	0	0	0	3225	1461	51	5	1248	5	CEACAM5	19	42221645	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1744608	42221645	16907338	2949	4973											
ATP1A3	478	broad.mit.edu	37	chr19	42474237	42474237	+	Intron	DEL	C	-	-													tggtcctgcccacgtctgctCccctgagtcaatgccagggt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42474237	-	-	42474237	6	5	4	0	1	1	0	1	0	0	0	0	1134	870	30	0		0	ATP1A3	19	42474237	Intron	DEL	C	TCGA-05-4382-01A-01D-1265-08	252592	42474237	16654746	2950	4974											
PSG8	440533	broad.mit.edu	37	chr19	43259086	43259086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgagaggcctggcctctgGtcgttttgatttaagctggt	14	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43259086	T	T	43259086	1	4	4	0	1	0	0	0	0	0	0	0	12767	1276	44	3		3	PSG8	19	43259086	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	784849	43259086	15869897	2951	4975											
PSG8	440533	broad.mit.edu	37	chr19	43268410	43268410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttgggcagtcgtgggtgGgttccagaagtttaaaagtg	16	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43268410	T	T	43268410	3	4	4	1	0	0	0	0	1	0	0	0	12767	1232	43	2	1229	2	PSG8	19	43268410	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	9324	43268410	15860573	2952	4976											
PSG1	5669	broad.mit.edu	37	chr19	43343331	43343331	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attagtgctgagaagcaggaGtttagtggaggaaggaggag	18	2	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43343331	A	A	43343331	1	1	4	0	1	0	0	0	0	0	0	0	12759	1044	36	4		4	PSG1	19	43343331	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	74921	43343331	15785652	2953	4977											
PSG8	440533	broad.mit.edu	37	chr19	43349343	43349343	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccatttagccaccacgtGtaggtgtagttctcactttt	8	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43349343	T	T	43349343	1	4	4	0	1	0	0	0	0	0	0	0	12767	1392	48	3		3	PSG8	19	43349343	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	6012	43349343	15779640	2954	4978											
PSG6	5675	broad.mit.edu	37	chr19	43575651	43575651	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctttctcaggcgagacaCaaggtcagccatgagaaaac	9	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43575651	T	T	43575651	1	4	4	0	1	0	0	0	0	0	0	0	12765	493	17	4		4	PSG6	19	43575651	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	226308	43575651	15553332	2955	4979											
PSG5	5673	broad.mit.edu	37	chr19	43680093	43680093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatttcacattcatagggtCctgtttcatttctcgtgaca	7	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43680093	A	A	43680093	3	1	4	1	0	0	0	0	1	0	0	0	12764	855	30	3	381	3	PSG5	19	43680093	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	104442	43680093	15448890	2956	4980											
PSG9	5678	broad.mit.edu	37	chr19	43757746	43757746	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgttctttttctcagtgTctcagttgttgcagtcatga	9	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43757746	A	A	43757746	1	1	4	0	1	0	0	0	0	0	0	0	12768	1682	58	5		5	PSG9	19	43757746	3'UTR	SNP	T	TCGA-05-4382-01A-01D-1265-08	77653	43757746	15371237	2957	4981											
PSG9	5678	broad.mit.edu	37	chr19	43773392	43773392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgaactcctgatctcGtgatccacccacctcagcct	6	16	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43773392	T	T	43773392	1	4	4	0	1	0	0	0	0	0	0	0	12768	1160	40	3		3	PSG9	19	43773392	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	15646	43773392	15355591	2958	4982											
CD177	57126	broad.mit.edu	37	chr19	43857713	43857713	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggggtccctgataggccActgcggccattgagacttgg	15	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43857713	T	T	43857713	1	4	4	0	1	0	0	0	0	0	0	0	3001	174	6	5		5	CD177	19	43857713	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	84321	43857713	15271270	2959	4983											
CD177	57126	broad.mit.edu	37	chr19	43859777	43859777	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgatcaaatccagtgccctCtcagtgccccctcactctgt	6	17	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43859777	A	A	43859777	1	1	4	0	1	0	0	0	0	0	0	0	3001	928	32	3		3	CD177	19	43859777	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2064	43859777	15269206	2960	4984											
XRCC1	7515	broad.mit.edu	37	chr19	44058904	44058904	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcgaacgcggttggggtttGagccactgcggctctcggaa	16	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44058904	C	C	44058904	4	2	4	1	0	0	0	0	0	1	0	0	17579	1294	45	4	1649	4	XRCC1	19	44058904	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	199127	44058904	15070079	2961	4985											
IRGC	56269	broad.mit.edu	37	chr19	44222873	44222873	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccacggaaagcatccgcCtggaggtgggcgtcacgggc	15	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44222873	G	G	44222873	3	3	4	1	0	0	0	0	1	0	0	0	7908	680	24	4	165	4	IRGC	19	44222873	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	163969	44222873	14906110	2962	4986											
ZNF404	342908	broad.mit.edu	37	chr19	44377026	44377026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgagaattaagtctaaagGtttttccacattccttacat	6	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44377026	T	T	44377026	3	4	4	1	0	0	0	0	1	0	0	0	18013	1261	44	3	322	3	ZNF404	19	44377026	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	154153	44377026	14751957	2963	4987											
ZNF155	7711	broad.mit.edu	37	chr19	44500732	44500732	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcaatgtgggaaaggtttCagtcgtagatcagcacttaa	12	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44500732	G	G	44500732	3	3	4	1	0	0	0	0	1	0	0	0	17862	825	29	4	737	4	ZNF155	19	44500732	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	123706	44500732	14628251	2964	4988											
ZNF234	10780	broad.mit.edu	37	chr19	44661726	44661726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtgaggagtgtgggaaGgtcttcagtcaggcctcgca	15	7	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44661726	T	T	44661726	3	4	4	1	0	0	0	0	1	0	0	0	17913	991	35	2	1571	2	ZNF234	19	44661726	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	160994	44661726	14467257	2965	4989											
ZNF229	7772	broad.mit.edu	37	chr19	44936498	44936498	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccagcagctctagctccTcctcagtgaagaccacagcc	8	16	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44936498	G	G	44936498	3	3	4	1	0	0	0	0	1	0	0	0	17908	1551	54	5	2348	5	ZNF229	19	44936498	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	274772	44936498	14192485	2966	4990											
HIF3A	64344	broad.mit.edu	37	chr19	46808466	46808466	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataattcagaccataactgaCtagagatgcccccatccccc	5	15	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46808466	T	T	46808466	1	4	4	0	1	0	0	0	0	0	0	0	7172	580	20	4		4	HIF3A	19	46808466	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1871968	46808466	12320517	2967	4991											
ZC3H4	23211	broad.mit.edu	37	chr19	47584717	47584717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcactgaggcaatggaGtgcgcatgtcccagttcctg	12	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47584717	A	A	47584717	1	1	4	0	1	0	0	0	0	0	0	0	17696	1044	36	4		4	ZC3H4	19	47584717	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	776251	47584717	11544266	2968	4992											
CABP5	56344	broad.mit.edu	37	chr19	48542528	48542528	+	Frame_Shift_Del	DEL	G	-	-													gctgtttctgcaagcaatttGggggtcatcagctccacaaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48542528	-	-	48542528	7	5	4	1	0	1	0	1	0	0	0	0	2560	1335	47	0	248	0	CABP5	19	48542528	Frame_Shift_Del	DEL	G	TCGA-05-4382-01A-01D-1265-08	957811	48542528	10586455	2969	4993											
LIG1	3978	broad.mit.edu	37	chr19	48646673	48646673	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatgtctgacatccatgatCatacgcccgagcggggtcag	11	13	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48646673	A	A	48646673	1	1	4	0	1	0	0	0	0	0	0	0	8853	841	29	3		3	LIG1	19	48646673	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	104145	48646673	10482310	2970	4994											
GRWD1	83743	broad.mit.edu	37	chr19	48954149	48954149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggtctgagggaaaagagGgctgggagcctgacggaggt	19	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48954149	T	T	48954149	1	4	4	0	1	0	0	0	0	0	0	0	6877	1247	43	2		2	GRWD1	19	48954149	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	307476	48954149	10174834	2971	4995											
PPP1R15A	23645	broad.mit.edu	37	chr19	49376908	49376908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgcagatggccagcgtGctcccctgtctcccagcctt	9	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49376908	T	T	49376908	3	4	4	1	0	0	0	0	1	0	0	0	12464	1319	46	3	420	3	PPP1R15A	19	49376908	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	422759	49376908	9752075	2972	4996											
CGB2	114336	broad.mit.edu	37	chr19	49535344	49535344	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcggaagatatcccgctaaGagagagacatgtcaaaggta	12	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49535344	C	C	49535344	1	2	4	0	1	0	0	0	0	0	0	0	3328	957	33	4		4	CGB2	19	49535344	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	158436	49535344	9593639	2973	4997											
CGB	1082	broad.mit.edu	37	chr19	49539626	49539626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcctggccttcccatccCgcatggtacaccacccacaa	6	19	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49539626	A	A	49539626	1	1	4	0	1	0	0	0	0	0	0	0	3326	667	23	1		1	CGB	19	49539626	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4282	49539626	9589357	2974	4998											
TRPM4	54795	broad.mit.edu	37	chr19	49703734	49703734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggggacatagggaaagGggtggggccagggagggagt	25	4	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49703734	T	T	49703734	1	4	4	0	1	0	0	0	0	0	0	0	16713	1247	43	2		2	TRPM4	19	49703734	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	164108	49703734	9425249	2975	4999											
ALDH16A1	126133	broad.mit.edu	37	chr19	49964950	49964950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagctggcgggggagctgGgccccttcccgggaatcctg	16	15	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49964950	T	T	49964950	3	4	4	1	0	0	0	0	1	0	0	0	488	1232	43	2	674	2	ALDH16A1	19	49964950	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	261216	49964950	9164033	2976	5000											
NUP62	23636	broad.mit.edu	37	chr19	50412420	50412420	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggctgggcccagtgctGgtgatggtggctgtgggtgt	20	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50412420	T	T	50412420	2	4	4	1	0	0	0	0	0	0	0	1	10863	1335	47	2		2	NUP62	19	50412420	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	447470	50412420	8716563	2977	5001											
SYT3	84258	broad.mit.edu	37	chr19	51132540	51132540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggaaggtcaggggagaGggccactgaccgagccgccc	18	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51132540	T	T	51132540	1	4	4	0	1	0	0	0	0	0	0	0	15594	1015	35	2		2	SYT3	19	51132540	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	720120	51132540	7996443	2978	5002											
GPR32	2854	broad.mit.edu	37	chr19	51274316	51274316	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgggccctgaaccaccgCactgtgcagcgggcgagctg	15	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51274316	T	T	51274316	2	4	4	1	0	0	0	0	0	0	0	1	6753	697	25	4		4	GPR32	19	51274316	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	141776	51274316	7854667	2979	5003											
GPR32	2854	broad.mit.edu	37	chr19	51274424	51274424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaatggaatggctgtacGcactgctacttggcgttcaa	11	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51274424	T	T	51274424	2	4	4	1	0	0	0	0	0	0	0	1	6753	1074	38	3		3	GPR32	19	51274424	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	108	51274424	7854559	2980	5004											
KLK4	9622	broad.mit.edu	37	chr19	51412842	51412842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggctcttgggggagGggttaccgagcaggggcgtg	21	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51412842	T	T	51412842	1	4	4	0	1	0	0	0	0	0	0	0	8477	1247	43	2		2	KLK4	19	51412842	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	138418	51412842	7716141	2981	5005											
C19orf75	284369	broad.mit.edu	37	chr19	51767524	51767524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcagattttgacagggCtggtgtgtctgaagcaaata	13	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51767524	A	A	51767524	1	1	4	0	1	0	0	0	0	0	0	0	1969	812	28	3		3	C19orf75	19	51767524	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	354682	51767524	7361459	2982	5006											
SIGLEC8	27181	broad.mit.edu	37	chr19	51960689	51960689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcccaacccatgagggaCctgggcatcttggtccagca	10	15	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51960689	A	A	51960689	1	1	4	0	1	0	0	0	0	0	0	0	14427	522	18	3		3	SIGLEC8	19	51960689	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	193165	51960689	7168294	2983	5007											
FPR2	2358	broad.mit.edu	37	chr19	52272029	52272029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggtcacctttgtcctcGgggtcctgggcaatgggctt	15	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52272029	T	T	52272029	3	4	4	1	0	0	0	0	1	0	0	0	6099	1116	39	1	120	1	FPR2	19	52272029	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	311340	52272029	6856954	2984	5008											
FPR2	2358	broad.mit.edu	37	chr19	52272799	52272799	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccttcttcaacagctgCctcaaccccatgctttacgt	6	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52272799	A	A	52272799	4	1	4	1	0	0	0	0	0	1	0	0	6099	747	26	3	890	3	FPR2	19	52272799	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	770	52272799	6856184	2985	5009											
ZNF649	65251	broad.mit.edu	37	chr19	52394293	52394293	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtctttcctgtatgatatcTctgatgtgctacaaggcaag	9	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52394293	A	A	52394293	4	1	4	1	0	0	0	0	0	1	0	0	18191	1559	54	5	425	5	ZNF649	19	52394293	Nonsense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	121494	52394293	6734690	2986	5010											
ZNF649	65251	broad.mit.edu	37	chr19	52399823	52399823	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgccggcttgataccctGtttgtgggaaatgggagaag	15	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52399823	A	A	52399823	1	1	4	0	1	0	0	0	0	0	0	0	18191	1392	48	4		4	ZNF649	19	52399823	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	5530	52399823	6729160	2987	5011											
ZNF432	9668	broad.mit.edu	37	chr19	52537917	52537917	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagggcttctctcctgtatGagttcgctgatgtataataa	10	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52537917	C	C	52537917	3	2	4	1	0	0	0	0	1	0	0	0	18033	1290	45	4	947	4	ZNF432	19	52537917	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	138094	52537917	6591066	2988	5012											
ZNF480	147657	broad.mit.edu	37	chr19	52825630	52825630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttacaaatgtaatgaatGtggaaaggtctttattcaaa	7	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825630	T	T	52825630	3	4	4	1	0	0	0	0	1	0	0	0	18062	1377	48	3	1141	3	ZNF480	19	52825630	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	287713	52825630	6303353	2989	5013											
ZNF320	162967	broad.mit.edu	37	chr19	53368655	53368655	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctcccaaatcacggccCtgtataaagcgttctgtgca	8	12	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53368655	G	G	53368655	1	3	4	0	1	0	0	0	0	0	0	0	17965	696	24	4		4	ZNF320	19	53368655	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	543025	53368655	5760328	2990	5014											
VN1R4	317703	broad.mit.edu	37	chr19	53770647	53770647	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgccaatggacactcccCtgcccactctatggagatag	10	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53770647	T	T	53770647	3	4	4	1	0	0	0	0	1	0	0	0	17307	681	24	4	636	4	VN1R4	19	53770647	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	401992	53770647	5358336	2991	5015											
DPRX	503834	broad.mit.edu	37	chr19	54137695	54137695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcacttgatcatcacgttGtacctcagtggaaaggaaag	10	8	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54137695	T	T	54137695	1	4	4	0	1	0	0	0	0	0	0	0	4778	1392	48	3		3	DPRX	19	54137695	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	367048	54137695	4991288	2992	5016											
VSTM1	284415	broad.mit.edu	37	chr19	54545341	54545341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggggtgggggctcagGgtgccaatcccggatgtgcc	20	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54545341	T	T	54545341	1	4	4	0	1	0	0	0	0	0	0	0	17355	1247	43	2		2	VSTM1	19	54545341	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	407646	54545341	4583642	2993	5017											
LILRB2	10288	broad.mit.edu	37	chr19	54784267	54784268	+	Intron	DNP	GG	TT	TT													agggaccagagtttggctgtGgggtgaggtccctcctaggt							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54784268	TT	TT	54784267	1	4	4	0	1	0	0	0	0	0	0	0	8863	1363	47	2		2	LILRB2	19	54784267	Intron	DNP	GG	TCGA-05-4382-01A-01D-1265-08	238926	54784267	4344716	2994	5018											
LENG8	114823	broad.mit.edu	37	chr19	54968892	54968892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccacgctacctgagttGtactccgagtgtgaattcag	11	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54968892	T	T	54968892	1	4	4	0	1	0	0	0	0	0	0	0	8796	1392	48	3		3	LENG8	19	54968892	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	184625	54968892	4160091	2995	5019											
LILRA1	11024	broad.mit.edu	37	chr19	55112134	55112134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagttgatctgccctgacCtctgtgacctctttgcccac	8	14	3	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55112134	A	A	55112134	1	1	4	0	1	0	0	0	0	0	0	0	8856	696	24	2		2	LILRA1	19	55112134	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	143242	55112134	4016849	2996	5020											
LILRB1	10859	broad.mit.edu	37	chr19	55146831	55146831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaaaggggcgctggctGgaaagggtctggggctcagg	22	6	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55146831	T	T	55146831	1	4	4	0	1	0	0	0	0	0	0	0	8862	1363	47	2		2	LILRB1	19	55146831	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	34697	55146831	3982152	2997	5021											
LILRB4	11006	broad.mit.edu	37	chr19	55175709	55175709	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaaagagcgtgaccctgcTgtgtcagtcacggagcccaa	13	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55175709	A	A	55175709	3	1	4	1	0	0	0	0	1	0	0	0	8865	1580	55	5	442	5	LILRB4	19	55175709	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	28878	55175709	3953274	2998	5022											
LILRB4	11006	broad.mit.edu	37	chr19	55177841	55177841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccttacactcccgtatcCtcccccaggtccagcccagc	5	22	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55177841	A	A	55177841	1	1	4	0	1	0	0	0	0	0	0	0	8865	696	24	2		2	LILRB4	19	55177841	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2132	55177841	3951142	2999	5023											
PTPRH	5794	broad.mit.edu	37	chr19	55697269	55697269	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcaccgtccagttctccatCacttcctcacctaccagggt	6	18	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55697269	G	G	55697269	2	3	4	1	0	0	0	0	0	0	0	1	12911	813	29	4		4	PTPRH	19	55697269	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	519428	55697269	3431714	3000	5024											
PTPRH	5794	broad.mit.edu	37	chr19	55708390	55708390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgaagtcatggcctgtGgcctgatggaatttgtattc	11	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55708390	T	T	55708390	1	4	4	0	1	0	0	0	0	0	0	0	12911	1363	47	2		2	PTPRH	19	55708390	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	11121	55708390	3420593	3001	5025											
NLRP4	147945	broad.mit.edu	37	chr19	56369120	56369120	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctgtcactgagattcacCtatactttgaggaggaagtc	10	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56369120	T	T	56369120	2	4	4	1	0	0	0	0	0	0	0	1	10574	680	24	4		4	NLRP4	19	56369120	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	660730	56369120	2759863	3002	5026											
NLRP4	147945	broad.mit.edu	37	chr19	56369305	56369305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagatctttcgggataggttCctgtacacgttctatttctg	9	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56369305	A	A	56369305	3	1	4	1	0	0	0	0	1	0	0	0	10574	854	30	3	552	3	NLRP4	19	56369305	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	185	56369305	2759678	3003	5027											
NLRP13	126204	broad.mit.edu	37	chr19	56422991	56422991	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatacataacgacaacacatCcctggttttgcatgaaagaa	6	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56422991	A	A	56422991	1	1	4	0	1	0	0	0	0	0	0	0	10570	870	30	3		3	NLRP13	19	56422991	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	53686	56422991	2705992	3004	5028											
NLRP13	126204	broad.mit.edu	37	chr19	56443578	56443578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggggttccaagcaaaGcttgaattcctccagctgat	10	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56443578	T	T	56443578	3	4	4	1	0	0	0	0	1	0	0	0	10570	971	34	3	3073	3	NLRP13	19	56443578	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	20587	56443578	2685405	3005	5029											
NLRP8	126205	broad.mit.edu	37	chr19	56473435	56473435	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcccttccatgtagagCgccagagagcaatgggctgc	11	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56473435	T	T	56473435	3	4	4	1	0	0	0	0	1	0	0	0	10578	768	27	4	2059	4	NLRP8	19	56473435	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	29857	56473435	2655548	3006	5030											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701251	56701251	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgcttgaatgtccccagcTgacggaaggccttttgacag	12	11	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701251	A	A	56701251	3	1	4	1	0	0	0	0	1	0	0	0	18368	1580	55	5	58	5	ZSCAN5B	19	56701251	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	227816	56701251	2427732	3007	5031											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701293	56701293	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggacatttgtagggcttcTctccggagtgggtgcgctgg	17	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701293	A	A	56701293	3	1	4	1	0	0	0	0	1	0	0	0	18368	1551	54	5	100	5	ZSCAN5B	19	56701293	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	42	56701293	2427690	3008	5032											
ZNF667	63934	broad.mit.edu	37	chr19	56953439	56953439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggccttcgcattttcagGgattttctctccagcatgaa	8	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56953439	T	T	56953439	3	4	4	1	0	0	0	0	1	0	0	0	18201	1232	43	2	911	2	ZNF667	19	56953439	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	252146	56953439	2175544	3009	5033											
PEG3	5178	broad.mit.edu	37	chr19	57328676	57328676	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctggaaacaagggttgaAttaaacctaaagcctcccct	7	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57328676	G	G	57328676	2	3	4	1	0	0	0	0	0	0	0	1	11814	98	4	5		5	PEG3	19	57328676	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	375237	57328676	1800307	3010	5034											
PEG3	5178	broad.mit.edu	37	chr19	57333091	57333091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagcttgttttcgccacCacaggaagggaaagatcccg	10	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57333091	A	A	57333091	2	1	4	1	0	0	0	0	0	0	0	1	11814	581	21	2		2	PEG3	19	57333091	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	4415	57333091	1795892	3011	5035											
DUXA	503835	broad.mit.edu	37	chr19	57678864	57678864	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgggagacaagtcactctGcgcagagactgggttttata	12	8	3	2	rs114993682	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57678864	C	C	57678864	1	2	4	0	1	0	0	0	0	0	0	0	4874	1334	46	4		4	DUXA	19	57678864	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	345773	57678864	1450119	3012	5036											
ZNF460	10794	broad.mit.edu	37	chr19	57802137	57802137	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgcctgaggaagtctcactCcaggaacagctggcacaggg	13	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57802137	T	T	57802137	2	4	4	1	0	0	0	0	0	0	0	1	18051	842	30	4		4	ZNF460	19	57802137	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	123273	57802137	1326846	3013	5037											
ZNF134	7693	broad.mit.edu	37	chr19	58132534	58132534	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtttgagtgcattgaatgCgggaaattctttagtcgaag	12	6	1	2	rs34357677	by1000genomes	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58132534	G	G	58132534	3	3	4	1	0	0	0	0	1	0	0	0	17850	776	27	4	1053	4	ZNF134	19	58132534	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	330397	58132534	996449	3014	5038											
ZNF135	7694	broad.mit.edu	37	chr19	58579104	58579104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggtgagtgtgggaaaGccttcagtcagagcacactc	14	8	2	2	rs148350290		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58579104	T	T	58579104	3	4	4	1	0	0	0	0	1	0	0	0	17851	971	34	3	1455	3	ZNF135	19	58579104	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	446570	58579104	549879	3015	5039											
ZNF274	10782	broad.mit.edu	37	chr19	58718367	58718367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggtccccgggagccctgGaccagctccgagagctgtgt	14	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58718367	T	T	58718367	3	4	4	1	0	0	0	0	1	0	0	0	17935	1183	41	3	551	3	ZNF274	19	58718367	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	139263	58718367	410616	3016	5040											
ANGPT4	51378	broad.mit.edu	37	chr20	865663	865663	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctggagggtgagcagggtCtcccctcccctctcctgccc	11	19	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	865663	T	T	865663	1	4	4	0	1	0	0	0	0	0	0	0	612	928	32	4		4	ANGPT4	20	865663	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		865663	62159857	3017	5041											
SIRPD	128646	broad.mit.edu	37	chr20	1517713	1517713	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctaggacaacagagattcatCcgccccactgcaggtggcga	11	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1517713	G	G	1517713	1	3	4	0	1	0	0	0	0	0	0	0	14448	870	30	4		4	SIRPD	20	1517713	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	652050	1517713	61507807	3018	5042											
VPS16	64601	broad.mit.edu	37	chr20	2843379	2843379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctggatggccgggccgGggagggtggggctgggaggg	26	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2843379	T	T	2843379	1	4	4	0	1	0	0	0	0	0	0	0	17320	1247	43	2		2	VPS16	20	2843379	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1325666	2843379	60182141	3019	5043											
ADAM33	80332	broad.mit.edu	37	chr20	3651812	3651812	+	Intron	DEL	G	-	-													tgtcatggtctgcggggattGggggaaggggcgctgagtcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3651812	-	-	3651812	6	5	4	0	1	1	0	1	0	0	0	0	250	1363	47	0		0	ADAM33	20	3651812	Intron	DEL	G	TCGA-05-4382-01A-01D-1265-08	808433	3651812	59373708	3020	5044											
PROKR2	128674	broad.mit.edu	37	chr20	5294854	5294854	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccagtgcaatgccaatgacGatcttggctgcgaagaaggt	13	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5294854	A	A	5294854	2	1	4	1	0	0	0	0	0	0	0	1	12659	1048	37	4		4	PROKR2	20	5294854	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1643042	5294854	57730666	3021	5045											
TRMT6	51605	broad.mit.edu	37	chr20	5922757	5922757	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgctctggcctgtcaAaacatttcaacaatatttat	6	8	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5922757	G	G	5922757	1	3	4	0	1	0	0	0	0	0	0	0	16693	29	1	5		5	TRMT6	20	5922757	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	627903	5922757	57102763	3022	5046											
ISM1	140862	broad.mit.edu	37	chr20	13260326	13260326	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgactctgaagcagataaaGatcagcatccggagaataag	10	8	2	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13260326	A	A	13260326	3	1	4	1	0	0	0	0	1	0	0	0	7930	942	33	4	434	4	ISM1	20	13260326	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7337569	13260326	49765194	3023	5047											
ISM1	140862	broad.mit.edu	37	chr20	13260371	13260371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggtcagtcccatcccccGactggcgggcctggtggcag	15	15	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13260371	A	A	13260371	3	1	4	1	0	0	0	0	1	0	0	0	7930	1058	37	4	479	4	ISM1	20	13260371	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	45	13260371	49765149	3024	5048											
C20orf26	26074	broad.mit.edu	37	chr20	20234372	20234372	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagatactgggtggctcttGatatatgcataccctgacgg	11	9	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20234372	C	C	20234372	1	2	4	0	1	0	0	0	0	0	0	0	2128	1305	45	4		4	C20orf26	20	20234372	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	6974001	20234372	42791148	3025	5049											
CD93	22918	broad.mit.edu	37	chr20	23066263	23066263	+	Silent	SNP	C	T	T													gggccccccagggccagaggCcggcacatgcctttgaagct							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23066263	T	T	23066263	2	4	4	1	0	0	0	0	0	0	0	1	3077	726	26	4		4	CD93	20	23066263	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2831891	23066263	39959257	3026	5050	17	2									
CD93	22918	broad.mit.edu	37	chr20	23066266	23066266	+	Nonsense_Mutation	SNP	G	T	T													ccccccagggccagaggccgGcacatgcctttgaagctgaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23066266	T	T	23066266	4	4	4	1	0	0	0	0	0	1	0	0	3077	1195	42	3	1402	3	CD93	20	23066266	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3	23066266	39959254	3027	5051	17	2									
CST9L	128821	broad.mit.edu	37	chr20	23549098	23549098	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagcatggtgctgactGtaggcaccgctgactttgct	13	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23549098	T	T	23549098	1	4	4	0	1	0	0	0	0	0	0	0	4014	1392	48	3		3	CST9L	20	23549098	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	482832	23549098	39476422	3028	5052											
DEFB115	245929	broad.mit.edu	37	chr20	29847348	29847348	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagaaagaaaaatgtggGgaaaaacatatttgctgtgt	12	2	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29847348	T	T	29847348	2	4	4	1	0	0	0	0	0	0	0	1	4443	1219	43	2		2	DEFB115	20	29847348	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	6298250	29847348	33178172	3029	5053											
REM1	28954	broad.mit.edu	37	chr20	30060867	30060867	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagcacaagaggaaagacCcgagcaggctgagcctcgct	14	11	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30060867	A	A	30060867	1	1	4	0	1	0	0	0	0	0	0	0	13330	638	22	2		2	REM1	20	30060867	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	213519	30060867	32964653	3030	5054											
REM1	28954	broad.mit.edu	37	chr20	30060898	30060898	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctcgctgcttccagccCaggctttattgagctgcaga	11	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30060898	A	A	30060898	1	1	4	0	1	0	0	0	0	0	0	0	13330	609	21	2		2	REM1	20	30060898	5'Flank	SNP	C	TCGA-05-4382-01A-01D-1265-08	31	30060898	32964622	3031	5055											
REM1	28954	broad.mit.edu	37	chr20	30065698	30065698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggtcgtggacacctgGgaggccgagaaactggtatg	17	8	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30065698	T	T	30065698	3	4	4	1	0	0	0	0	1	0	0	0	13330	1241	43	2	414	2	REM1	20	30065698	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	4800	30065698	32959822	3032	5056											
REM1	28954	broad.mit.edu	37	chr20	30070104	30070104	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggataaaagctggagCcaggagtcatgcctgcaggg	15	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30070104	G	G	30070104	3	3	4	1	0	0	0	0	1	0	0	0	13330	738	26	4	448	4	REM1	20	30070104	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4406	30070104	32955416	3033	5057											
XKR7	343702	broad.mit.edu	37	chr20	30584558	30584558	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttctgggtcatccaaggGgagacggacttctgcatgtc	12	11	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30584558	A	A	30584558	2	1	4	1	0	0	0	0	0	0	0	1	17563	1219	43	4		4	XKR7	20	30584558	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	514454	30584558	32440962	3034	5058											
HCK	3055	broad.mit.edu	37	chr20	30659585	30659585	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacatccaccatcaagccGgtgagtaggggaggtcccag	12	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30659585	A	A	30659585	2	1	4	1	0	0	0	0	0	0	0	1	7060	1130	39	4		4	HCK	20	30659585	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	75027	30659585	32365935	3035	5059											
ASXL1	171023	broad.mit.edu	37	chr20	31021302	31021302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggagtcagaacaagcagGggttgctaaggatgcaaaat	13	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31021302	T	T	31021302	3	4	4	1	0	0	0	0	1	0	0	0	1070	1232	43	2	1353	2	ASXL1	20	31021302	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	361717	31021302	32004218	3036	5060											
BPIL1	80341	broad.mit.edu	37	chr20	31611278	31611278	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaaactgaggcaaaaCcatacttagtcatcaccaac	8	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31611278	T	T	31611278	1	4	4	0	1	0	0	0	0	0	0	0	1500	522	18	4		4	BPIL1	20	31611278	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	589976	31611278	31414242	3037	5061											
C20orf114	92747	broad.mit.edu	37	chr20	31876462	31876462	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctcagggagcctcgagtGatacccctccccagcctgga	10	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31876462	T	T	31876462	1	4	4	0	1	0	0	0	0	0	0	0	2104	1305	45	3		3	C20orf114	20	31876462	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	265184	31876462	31149058	3038	5062											
NCOA6	23054	broad.mit.edu	37	chr20	33337364	33337364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcgttagcgtgacatcCttattgactgggaagcctgg	14	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33337364	A	A	33337364	3	1	4	1	0	0	0	0	1	0	0	0	10328	680	24	2	3585	2	NCOA6	20	33337364	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1460902	33337364	29688156	3039	5063											
MYH7B	57644	broad.mit.edu	37	chr20	33568209	33568209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatacaaaaattagccGgtcgtggtggcacgcgcttg	11	8	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33568209	T	T	33568209	1	4	4	0	1	0	0	0	0	0	0	0	10134	1131	39	1		1	MYH7B	20	33568209	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	230845	33568209	29457311	3040	5064											
EIF6	3692	broad.mit.edu	37	chr20	33867799	33867799	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctggtcttcaattgaagtCttgggatgcaccagccctcc	9	13	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33867799	A	A	33867799	3	1	4	1	0	0	0	0	1	0	0	0	5087	912	32	3	257	3	EIF6	20	33867799	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	299590	33867799	29157721	3041	5065											
CEP250	11190	broad.mit.edu	37	chr20	34092529	34092529	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaggaacaggagattcTggagctgagggagacccagc	14	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34092529	A	A	34092529	3	1	4	1	0	0	0	0	1	0	0	0	3282	1580	55	5	6438	5	CEP250	20	34092529	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	224730	34092529	28932991	3042	5066											
VSTM2L	128434	broad.mit.edu	37	chr20	36560130	36560130	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcagcggctccccctcctActcgctggagatccagtggt	12	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36560130	G	G	36560130	3	3	4	1	0	0	0	0	1	0	0	0	17357	391	14	5	221	5	VSTM2L	20	36560130	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2467601	36560130	26465390	3043	5067											
KIAA1755	85449	broad.mit.edu	37	chr20	36841717	36841717	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcccctctggggggcccAggaggccaataggactttgg	15	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36841717	T	T	36841717	2	4	4	1	0	0	0	0	0	0	0	1	8327	175	7	5		5	KIAA1755	20	36841717	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	281587	36841717	26183803	3044	5068											
BPI	671	broad.mit.edu	37	chr20	36940272	36940272	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtccctacttgttcatctCtaggtggctgatccaactct	7	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36940272	A	A	36940272	1	1	4	0	1	0	0	0	0	0	0	0	1499	928	32	3		3	BPI	20	36940272	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	98555	36940272	26085248	3045	5069											
RALGAPB	57148	broad.mit.edu	37	chr20	37163979	37163979	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagtttatattatatccaAagtgtacaaaatttagcctc	4	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37163979	T	T	37163979	1	4	4	0	1	0	0	0	0	0	0	0	13123	29	1	5		5	RALGAPB	20	37163979	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	223707	37163979	25861541	3046	5070											
PTPRT	11122	broad.mit.edu	37	chr20	40757458	40757458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaccagcagcctcaccCgggaatggtcgtctgcagag	12	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40757458	A	A	40757458	3	1	4	1	0	0	0	0	1	0	0	0	12920	652	23	1	1594	1	PTPRT	20	40757458	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3593479	40757458	22268062	3047	5071											
PTPRT	11122	broad.mit.edu	37	chr20	40790177	40790178	+	Missense_Mutation	DNP	CA	AT	AT													ggaaagctccccgcggctgcCatctgcttcgaaaagaagga							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	40790178	AT	AT	40790177	3	1	4	1	0	0	0	0	1	0	0	0	12920	594	21	2	1888	2	PTPRT	20	40790177	Missense_Mutation	DNP	CA	TCGA-05-4382-01A-01D-1265-08	32719	40790177	22235343	3048	5072											
MYBL2	4605	broad.mit.edu	37	chr20	42302339	42302339	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaaaaagtaagagcctctCtcccccagacctttccctag	6	14	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42302339	G	G	42302339	1	3	4	0	1	0	0	0	0	0	0	0	10104	928	32	4		4	MYBL2	20	42302339	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1512162	42302339	20723181	3049	5073											
RIMS4	140730	broad.mit.edu	37	chr20	43386739	43386739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggtggccagggtctggCggcccacaaactgtgccggc	17	12	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43386739	A	A	43386739	3	1	4	1	0	0	0	0	1	0	0	0	13481	768	27	3	502	3	RIMS4	20	43386739	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1084400	43386739	19638781	3050	5074											
RIMS4	140730	broad.mit.edu	37	chr20	43386832	43386832	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccatagttaaggctgcaaGaggaaaaggtgagacaaagc	12	7	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43386832	T	T	43386832	1	4	4	0	1	0	0	0	0	0	0	0	13481	957	33	3		3	RIMS4	20	43386832	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	93	43386832	19638688	3051	5075											
STK4	6789	broad.mit.edu	37	chr20	43629814	43629814	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtatccttttacaggaagagGatgaaatggattctggcacg	12	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43629814	A	A	43629814	3	1	4	1	0	0	0	0	1	0	0	0	15424	1174	41	4	1001	4	STK4	20	43629814	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	242982	43629814	19395706	3052	5076											
WFDC5	149708	broad.mit.edu	37	chr20	43739421	43739421	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccccccgatttctctgtAagagaatctcctaatattgc	6	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43739421	G	G	43739421	1	3	4	0	1	0	0	0	0	0	0	0	17481	377	13	5		5	WFDC5	20	43739421	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	109607	43739421	19286099	3053	5077											
RBPJL	11317	broad.mit.edu	37	chr20	43941003	43941003	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caaggtcatctcgaagccctCgcagaagaagcagtcgctga	11	12	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43941003	G	G	43941003	3	3	4	1	0	0	0	0	1	0	0	0	13270	893	31	4	609	4	RBPJL	20	43941003	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	201582	43941003	19084517	3054	5078											
SPINLW1	57119	broad.mit.edu	37	chr20	44171509	44171509	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcatttcgcatacatctGcagagagactccagagttga	10	9	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44171509	A	A	44171509	1	1	4	0	1	0	0	0	0	0	0	0	15185	1334	46	4		4	SPINLW1	20	44171509	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	230506	44171509	18854011	3055	5079											
TNNC2	7125	broad.mit.edu	37	chr20	44455854	44455854	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtccagagtgctcccgtgaGtaaaggcacaaagtcccctc	11	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44455854	C	C	44455854	1	2	4	0	1	0	0	0	0	0	0	0	16448	1044	36	4		4	TNNC2	20	44455854	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	284345	44455854	18569666	3056	5080											
ZSWIM1	90204	broad.mit.edu	37	chr20	44512223	44512223	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacatccagcactccctcaAtgccatctgcacagggccag	7	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44512223	G	G	44512223	3	3	4	1	0	0	0	0	1	0	0	0	18369	101	4	5	994	5	ZSWIM1	20	44512223	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	56369	44512223	18513297	3057	5081											
ZNF335	63925	broad.mit.edu	37	chr20	44588902	44588902	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctctcggaaggtgcggtaGggacaaaagctgcatttgaa	13	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44588902	C	C	44588902	2	2	4	1	0	0	0	0	0	0	0	1	17978	987	35	4		4	ZNF335	20	44588902	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	76679	44588902	18436618	3058	5082											
MMP9	4318	broad.mit.edu	37	chr20	44642321	44642321	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggcgattctctgagggcAgggggagccggccgcagggc	19	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44642321	T	T	44642321	3	4	4	1	0	0	0	0	1	0	0	0	9763	179	7	5	1674	5	MMP9	20	44642321	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	53419	44642321	18383199	3059	5083											
SLC12A5	57468	broad.mit.edu	37	chr20	44675157	44675157	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttactccagtccatcccctCtgggtctaaggaccccaaac	6	17	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44675157	A	A	44675157	1	1	4	0	1	0	0	0	0	0	0	0	14499	928	32	3		3	SLC12A5	20	44675157	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	32836	44675157	18350363	3060	5084											
CDH22	64405	broad.mit.edu	37	chr20	44845433	44845433	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtaacagacagacacacaGacgcgccttcctctgggaag	12	12	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44845433	T	T	44845433	1	4	4	0	1	0	0	0	0	0	0	0	3137	957	33	3		3	CDH22	20	44845433	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	170276	44845433	18180087	3061	5085											
SLC35C2	51006	broad.mit.edu	37	chr20	44983640	44983640	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggcaccatcaggtctggtCcggccctgccctgcctccgc	11	19	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44983640	A	A	44983640	1	1	4	0	1	0	0	0	0	0	0	0	14694	870	30	3		3	SLC35C2	20	44983640	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	138207	44983640	18041880	3062	5086											
PREX1	57580	broad.mit.edu	37	chr20	47268094	47268094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctcacacaggctcagcCggggacccagggacagcagt	13	14	2	0	rs138988694		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47268094	A	A	47268094	3	1	4	1	0	0	0	0	1	0	0	0	12582	652	23	1	2560	1	PREX1	20	47268094	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2284454	47268094	15757426	3063	5087											
STAU1	6780	broad.mit.edu	37	chr20	47734826	47734826	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcaggacccatgcaaatcCcagaatcacgttcagaggaa	8	11	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47734826	G	G	47734826	1	3	4	0	1	0	0	0	0	0	0	0	15390	638	22	4		4	STAU1	20	47734826	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	466732	47734826	15290694	3064	5088											
PARD6B	84612	broad.mit.edu	37	chr20	49366767	49366767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccaagctttgagccagaGgatgaagacagcgaagaaga	13	7	0	6			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49366767	T	T	49366767	3	4	4	1	0	0	0	0	1	0	0	0	11540	991	35	2	871	2	PARD6B	20	49366767	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1631941	49366767	13658753	3065	5089											
ATP9A	10079	broad.mit.edu	37	chr20	50225013	50225013	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagggaaggaagggaaaagCaaaggaggaaaggaggaagg	21	1	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50225013	G	G	50225013	1	3	4	0	1	0	0	0	0	0	0	0	1202	725	25	4		4	ATP9A	20	50225013	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	858246	50225013	12800507	3066	5090											
TSHZ2	128553	broad.mit.edu	37	chr20	51870276	51870276	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgccagtgatcaggtgtcGgacatcaagagtgtctgcgg	15	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51870276	T	T	51870276	2	4	4	1	0	0	0	0	0	0	0	1	16749	1103	39	1		1	TSHZ2	20	51870276	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1645263	51870276	11155244	3067	5091											
TSHZ2	128553	broad.mit.edu	37	chr20	51871406	51871406	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtaaaaaagaaaggccagAggaaaccagcaaggatgaga	13	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51871406	T	T	51871406	3	4	4	1	0	0	0	0	1	0	0	0	16749	304	11	5	1415	5	TSHZ2	20	51871406	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	1130	51871406	11154114	3068	5092											
MC3R	4159	broad.mit.edu	37	chr20	54823861	54823861	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagcttcctacggaccCtgctggagccccagctcgga	12	16	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54823861	A	A	54823861	1	1	4	1	0	0	0	0	0	0	0	0	9458	696	24	2		2	MC3R	20	54823861	Translation_Start_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	2952455	54823861	8201659	3069	5093											
C20orf106	200232	broad.mit.edu	37	chr20	55100027	55100028	+	Missense_Mutation	DNP	TG	CT	CT													taccagagcacacccaaggcTggcttgggagcaaatggctc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	55100028	CT	CT	55100027	3	2	4	1	0	0	0	0	1	0	0	0	2098	1580	55	5	165	5	C20orf106	20	55100027	Missense_Mutation	DNP	TG	TCGA-05-4382-01A-01D-1265-08	276166	55100027	7925493	3070	5094											
SPO11	23626	broad.mit.edu	37	chr20	55910525	55910525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcggagtatcctttaagtGggaaaactatttaaactttt	7	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55910525	T	T	55910525	1	4	4	0	1	0	0	0	0	0	0	0	15195	1363	47	2		2	SPO11	20	55910525	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	810498	55910525	7114995	3071	5095											
GNAS	2778	broad.mit.edu	37	chr20	57430252	57430252	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtacccctggcggagaaGcgcagacagatgcgcaaaga	14	10	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57430252	A	A	57430252	2	1	4	1	0	0	0	0	0	0	0	1	6574	971	34	4		4	GNAS	20	57430252	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1519727	57430252	5595268	3072	5096											
ZNF831	128611	broad.mit.edu	37	chr20	57765979	57765979	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttggtgcagggtaggcaaGatttactgcatgaggagaga	16	5	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57765979	T	T	57765979	1	4	4	0	1	0	0	0	0	0	0	0	18314	957	33	3		3	ZNF831	20	57765979	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	335727	57765979	5259541	3073	5097											
ZNF831	128611	broad.mit.edu	37	chr20	57769381	57769381	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggtacccaactgggagCtgggggagcctcctgggaat	16	11	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57769381	T	T	57769381	2	4	4	1	0	0	0	0	0	0	0	1	18314	796	28	4		4	ZNF831	20	57769381	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	3402	57769381	5256139	3074	5098											
ZNF831	128611	broad.mit.edu	37	chr20	57771065	57771065	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatcaaccctaaaaggtagGatgagtggccacctctgtca	10	10	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57771065	T	T	57771065	1	4	4	0	1	0	0	0	0	0	0	0	18314	1189	41	3		3	ZNF831	20	57771065	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1684	57771065	5254455	3075	5099											
OSBPL2	9885	broad.mit.edu	37	chr20	60848469	60848469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaattaatcaggtaaggGgggaaaggcccatcataaat	11	5	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60848469	T	T	60848469	1	4	4	0	1	0	0	0	0	0	0	0	11372	1247	43	2		2	OSBPL2	20	60848469	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3077404	60848469	2177051	3076	5100											
LAMA5	3911	broad.mit.edu	37	chr20	60892796	60892796	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcatgcagagtggcctgCagggtggcattgtcccggga	17	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60892796	A	A	60892796	2	1	4	1	0	0	0	0	0	0	0	1	8681	697	25	3		3	LAMA5	20	60892796	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	44327	60892796	2132724	3077	5101											
COL20A1	57642	broad.mit.edu	37	chr20	61943434	61943434	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagagccctccgggggcccGagtgtcttgagggaccacag	16	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61943434	T	T	61943434	1	4	4	0	1	0	0	0	0	0	0	0	3711	1073	37	3		3	COL20A1	20	61943434	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1050638	61943434	1082086	3078	5102											
COL20A1	57642	broad.mit.edu	37	chr20	61943875	61943875	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaccctgggggtggctcctCtacgctgactggccgggtga	15	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61943875	G	G	61943875	3	3	4	1	0	0	0	0	1	0	0	0	3711	913	32	4	1961	4	COL20A1	20	61943875	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	441	61943875	1081645	3079	5103											
COL20A1	57642	broad.mit.edu	37	chr20	61951687	61951687	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcagtgacacctgggcCgatgaggaccggtgctgtga	17	9	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61951687	A	A	61951687	2	1	4	1	0	0	0	0	0	0	0	1	3711	639	23	1		1	COL20A1	20	61951687	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	7812	61951687	1073833	3080	5104											
CHRNA4	1137	broad.mit.edu	37	chr20	61990856	61990856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacccctgtgctccttgcaGggcgacctcagtcacagtgc	11	15	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61990856	T	T	61990856	1	4	4	0	1	0	0	0	0	0	0	0	3416	1015	35	2		2	CHRNA4	20	61990856	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	39169	61990856	1034664	3081	5105											
EEF1A2	1917	broad.mit.edu	37	chr20	62127098	62127098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgaggggtcccctgccCtcacaggaagcacaggagac	14	13	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62127098	A	A	62127098	1	1	4	0	1	0	0	0	0	0	0	0	4964	696	24	2		2	EEF1A2	20	62127098	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	136242	62127098	898422	3082	5106											
PTK6	5753	broad.mit.edu	37	chr20	62162090	62162090	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccagccacgccctctgaGggccctaccttgataagcct	8	18	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62162090	A	A	62162090	1	1	4	0	1	0	0	0	0	0	0	0	12870	1015	35	4		4	PTK6	20	62162090	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	34992	62162090	863430	3083	5107											
PTK6	5753	broad.mit.edu	37	chr20	62164113	62164113	+	Intron	DEL	C	-	-													aggaagaggccaaggccctgCccccacacacagcagccatc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62164113	-	-	62164113	6	5	4	0	1	1	0	1	0	0	0	0	12870	754	26	0		0	PTK6	20	62164113	Intron	DEL	C	TCGA-05-4382-01A-01D-1265-08	2023	62164113	861407	3084	5108											
PRIC285	85441	broad.mit.edu	37	chr20	62192885	62192885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcagagctcagtgagaCccacctacacaggactgtct	13	12	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62192885	A	A	62192885	1	1	4	0	1	0	0	0	0	0	0	0	12591	522	18	3		3	PRIC285	20	62192885	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	28772	62192885	832635	3085	5109											
ZNF512B	57473	broad.mit.edu	37	chr20	62596021	62596021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtactccccattctctggCctggcctgcttgggtggaat	11	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62596021	A	A	62596021	3	1	4	1	0	0	0	0	1	0	0	0	18084	738	26	3	1643	3	ZNF512B	20	62596021	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	403136	62596021	429499	3086	5110											
BAGE2	85319	broad.mit.edu	37	chr21	11098884	11098884	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcccccttctcctggtcctCtaagccgggaacagagcagc	9	17	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11098884	A	A	11098884	1	1	4	0	1	0	0	0	0	0	0	0	1297	928	32	3		3	BAGE2	21	11098884	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08		11098884	37031011	3087	5111											
USP25	29761	broad.mit.edu	37	chr21	17197314	17197314	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaaacagagaaataacaaGaattaagagggaagagatca	10	4	1	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17197314	A	A	17197314	3	1	4	1	0	0	0	0	1	0	0	0	17182	942	33	4	1284	4	USP25	21	17197314	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6098430	17197314	30932581	3088	5112											
CHODL	140578	broad.mit.edu	37	chr21	19632483	19632483	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcaattctcttgtttaatCattatatatgatggtggttc	6	5	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19632483	A	A	19632483	1	1	4	0	1	0	0	0	0	0	0	0	3395	841	29	3		3	CHODL	21	19632483	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2435169	19632483	28497412	3089	5113											
TMPRSS15	5651	broad.mit.edu	37	chr21	19701475	19701475	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctttacaatattcagatTgcagacttacctaagagcaa	5	9	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19701475	C	C	19701475	1	2	4	0	1	0	0	0	0	0	0	0	16369	1827	63	5		5	TMPRSS15	21	19701475	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	68992	19701475	28428420	3090	5114											
NCAM2	4685	broad.mit.edu	37	chr21	22370902	22370902	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgagcctcctcctctccttCtacctgctggggttgcttgt	9	14	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22370902	T	T	22370902	2	4	4	1	0	0	0	0	0	0	0	1	10298	912	32	4		4	NCAM2	21	22370902	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	2669427	22370902	25758993	3091	5115											
ADAMTS1	9510	broad.mit.edu	37	chr21	28210056	28210056	+	Frame_Shift_Del	DEL	C	-	-													cttagaacatgatgaccactCccccagctgccactgggggc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28210056	-	-	28210056	7	5	4	1	0	1	0	1	0	0	0	0	255	864	30	0	161	0	ADAMTS1	21	28210056	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	5839154	28210056	19919839	3092	5116											
ADAMTS1	9510	broad.mit.edu	37	chr21	28216549	28216549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaattcttctacctgtgGgctgtcctacgccttgcagt	10	12	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28216549	T	T	28216549	3	4	4	1	0	0	0	0	1	0	0	0	255	1232	43	2	2214	2	ADAMTS1	21	28216549	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6493	28216549	19913346	3093	5117											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296484	28296484	+	Frame_Shift_Del	DEL	C	-	-													gcaccgttctggtgtgccaaCctgtgtcacaggtcctagag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28296484	-	-	28296484	7	5	4	1	0	1	0	1	0	0	0	0	269	507	18	0	115	0	ADAMTS5	21	28296484	Frame_Shift_Del	DEL	C	TCGA-05-4382-01A-01D-1265-08	79935	28296484	19833411	3094	5118											
N6AMT1	29104	broad.mit.edu	37	chr21	30260040	30260040	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacagcagctcttgtagcAttaagggcatctgtaactct	8	10	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30260040	T	T	30260040	1	4	4	0	1	0	0	0	0	0	0	0	10208	232	8	5		5	N6AMT1	21	30260040	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	1963556	30260040	17869855	3095	5119											
RNF160	26046	broad.mit.edu	37	chr21	30303583	30303583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcatgcaatcttcaacaCcctcaaaacgtttgtctacg	5	12	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30303583	A	A	30303583	3	1	4	1	0	0	0	0	1	0	0	0	13566	507	18	3	176	3	RNF160	21	30303583	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	43543	30303583	17826312	3096	5120											
RNF160	26046	broad.mit.edu	37	chr21	30318348	30318348	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaagtatgctactttaaatCttacatacttatttataact	3	6	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30318348	G	G	30318348	1	3	4	0	1	0	0	0	0	0	0	0	13566	928	32	4		4	RNF160	21	30318348	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	14765	30318348	17811547	3097	5121											
CLDN17	26285	broad.mit.edu	37	chr21	31538373	31538373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccttgcttctttctgttgCagcagcaaaatccacaaagc	6	13	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31538373	A	A	31538373	3	1	4	1	0	0	0	0	1	0	0	0	3509	710	25	3	115	3	CLDN17	21	31538373	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1220025	31538373	16591522	3098	5122											
KRTAP6-2	337967	broad.mit.edu	37	chr21	31971073	31971073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggagccgtagccatgacCatagccacagcaggagctat	13	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31971073	A	A	31971073	3	1	4	1	0	0	0	0	1	0	0	0	8642	594	21	2	70	2	KRTAP6-2	21	31971073	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	432700	31971073	16158822	3099	5123											
KRTAP20-1	337975	broad.mit.edu	37	chr21	31988931	31988931	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatggaagatattggtcatAtggtttctactgaacaattc	8	6	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31988931	T	T	31988931	3	4	4	1	0	0	0	0	1	0	0	0	8607	449	16	5	160	5	KRTAP20-1	21	31988931	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	17858	31988931	16140964	3100	5124											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127867	32127867	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attatgtgccagtcactgttGaccatcaataatattttgct	6	8	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32127867	T	T	32127867	1	4	4	0	1	0	0	0	0	0	0	0	8609	1305	45	3		3	KRTAP21-1	21	32127867	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	138936	32127867	16002028	3101	5125											
TIAM1	7074	broad.mit.edu	37	chr21	32585807	32585807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgcatatacaaaagtacCaccttaaaaaggaatctggg	7	9	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32585807	A	A	32585807	1	1	4	0	1	0	0	0	0	0	0	0	16013	609	21	2		2	TIAM1	21	32585807	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	457940	32585807	15544088	3102	5126											
TIAM1	7074	broad.mit.edu	37	chr21	32589888	32589888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgattgatgcttggccgtCcctgcttctttttggaggta	11	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32589888	A	A	32589888	3	1	4	1	0	0	0	0	1	0	0	0	16013	855	30	3	2732	3	TIAM1	21	32589888	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4081	32589888	15540007	3103	5127											
TIAM1	7074	broad.mit.edu	37	chr21	32825349	32825349	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactggatcttctcattggaGatcttctggatccaatgtat	8	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32825349	C	C	32825349	1	2	4	0	1	0	0	0	0	0	0	0	16013	957	33	4		4	TIAM1	21	32825349	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	235461	32825349	15304546	3104	5128											
SON	6651	broad.mit.edu	37	chr21	34922655	34922655	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccacagcgttggagctgcAggagtcgtcggtggcctcag	16	11	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34922655	G	G	34922655	3	3	4	1	0	0	0	0	1	0	0	0	15040	188	7	5	1128	5	SON	21	34922655	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	2097306	34922655	13207240	3105	5129											
ITSN1	6453	broad.mit.edu	37	chr21	35183306	35183306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccaaactggagaacccGgctggcttggaggagaatta	13	8	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35183306	T	T	35183306	3	4	4	1	0	0	0	0	1	0	0	0	7996	1116	39	1	2425	1	ITSN1	21	35183306	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	260651	35183306	12946589	3106	5130											
ITSN1	6453	broad.mit.edu	37	chr21	35199148	35199148	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaactgctgggaaaacaggGagtttaggaaaaaaacctgg	14	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35199148	T	T	35199148	2	4	4	1	0	0	0	0	0	0	0	1	7996	1161	41	3		3	ITSN1	21	35199148	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	15842	35199148	12930747	3107	5131											
MORC3	23515	broad.mit.edu	37	chr21	37742247	37742247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaagctgccagttggctGggcgcggtggctcatacctg	15	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37742247	T	T	37742247	1	4	4	0	1	0	0	0	0	0	0	0	9797	1363	47	2		2	MORC3	21	37742247	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2543099	37742247	10387648	3108	5132											
SIM2	6493	broad.mit.edu	37	chr21	38095501	38095501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttttcaagagcgtctgCagaaaggaaggcacgggagc	15	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38095501	A	A	38095501	1	1	4	0	1	0	0	0	0	0	0	0	14437	725	25	3		3	SIM2	21	38095501	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	353254	38095501	10034394	3109	5133											
DSCAM	1826	broad.mit.edu	37	chr21	41561185	41561185	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgaaaaagcaaaagggacAcaacttgttcagcaaagcag	9	8	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41561185	G	G	41561185	1	3	4	0	1	0	0	0	0	0	0	0	4808	174	6	5		5	DSCAM	21	41561185	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	3465684	41561185	6568710	3110	5134											
RRP1B	23076	broad.mit.edu	37	chr21	45094467	45094468	+	Intron	INS	-	T	T													ttaatatttcttacctttccINStttttttttttttttttttt					rs66506749		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45094468	T	T	45094467	6	5	4	0	1	1	1	0	0	0	0	0	13799	696	24	0		0	RRP1B	21	45094467	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	3533282	45094467	3035428	3111	5135											
AGPAT3	56894	broad.mit.edu	37	chr21	45402211	45402211	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagttcgcagactgataGgagtaactgagatagaaaaa	12	4	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45402211	T	T	45402211	4	4	4	1	0	0	0	0	0	1	0	0	388	1001	35	2	1099	2	AGPAT3	21	45402211	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	307744	45402211	2727684	3112	5136											
PFKL	5211	broad.mit.edu	37	chr21	45745937	45745937	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaagctgcgcgaggtttacCgcaagggtaggtggtgggtg	19	6	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45745937	T	T	45745937	3	4	4	1	0	0	0	0	1	0	0	0	11859	652	23	4	2161	4	PFKL	21	45745937	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	343726	45745937	2383958	3113	5137											
TRPM2	7226	broad.mit.edu	37	chr21	45825683	45825683	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccaccagagccctttgcctCcagggcccacctgggctagg	11	18	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45825683	G	G	45825683	1	3	4	0	1	0	0	0	0	0	0	0	16711	870	30	4		4	TRPM2	21	45825683	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	79746	45825683	2304212	3114	5138											
KRTAP10-1	386677	broad.mit.edu	37	chr21	45960051	45960051	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctggggtggggaggagGtgagctgcgggaggtgtgag	24	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45960051	T	T	45960051	1	4	4	0	1	0	0	0	0	0	0	0	8576	1276	44	3		3	KRTAP10-1	21	45960051	5'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	134368	45960051	2169844	3115	5139											
C21orf29	54084	broad.mit.edu	37	chr21	46046972	46046972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccctggaacaacaaggcCaggaggggtataaaagcctg	15	9	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46046972	A	A	46046972	1	1	4	0	1	0	0	0	0	0	0	0	2146	609	21	2		2	C21orf29	21	46046972	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	86921	46046972	2082923	3116	5140											
C21orf29	54084	broad.mit.edu	37	chr21	46057233	46057233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggaaaacacaggccctGggcatataaaagccccagca	11	12	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46057233	T	T	46057233	1	4	4	0	1	0	0	0	0	0	0	0	2146	1363	47	2		2	C21orf29	21	46057233	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	10261	46057233	2072662	3117	5141											
KRTAP10-10	353333	broad.mit.edu	37	chr21	46057504	46057504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgctgccagacggcctGtgagcccagcgcctgccaat	11	18	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46057504	T	T	46057504	3	4	4	1	0	0	0	0	1	0	0	0	8577	1377	48	3	172	3	KRTAP10-10	21	46057504	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	271	46057504	2072391	3118	5142											
KRTAP12-4	386684	broad.mit.edu	37	chr21	46074485	46074485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggacacagcacggggagCcagggcaggccattgggcag	19	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46074485	A	A	46074485	3	1	4	1	0	0	0	0	1	0	0	0	8592	739	26	3	295	3	KRTAP12-4	21	46074485	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	16981	46074485	2055410	3119	5143											
COL18A1	80781	broad.mit.edu	37	chr21	46888096	46888096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcctctccaggccgcGtcggtggcccctggttccgt	14	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46888096	T	T	46888096	1	4	4	0	1	0	0	0	0	0	0	0	3707	1160	40	3		3	COL18A1	21	46888096	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	813611	46888096	1241799	3120	5144											
COL18A1	80781	broad.mit.edu	37	chr21	46888412	46888412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaggccatggtcttgctGggcgtgaagctctctggggt	17	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46888412	T	T	46888412	2	4	4	1	0	0	0	0	0	0	0	1	3707	1335	47	2		2	COL18A1	21	46888412	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	316	46888412	1241483	3121	5145											
COL18A1	80781	broad.mit.edu	37	chr21	46898158	46898158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgtggggacttggagcGtggggtgcatttccatgtag	17	8	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46898158	T	T	46898158	1	4	4	0	1	0	0	0	0	0	0	0	3707	1160	40	3		3	COL18A1	21	46898158	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	9746	46898158	1231737	3122	5146											
PCBP3	54039	broad.mit.edu	37	chr21	47359930	47359930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctctaagaaatccccccGtccttgtttctagctaatag	6	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47359930	T	T	47359930	1	4	4	0	1	0	0	0	0	0	0	0	11596	1160	40	3		3	PCBP3	21	47359930	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	461772	47359930	769965	3123	5147											
PCNT	5116	broad.mit.edu	37	chr21	47754562	47754562	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacagcgtgggatgttcacAatcagtgaccaccaaccgga	11	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47754562	T	T	47754562	2	4	4	1	0	0	0	0	0	0	0	1	11684	117	5	5		5	PCNT	21	47754562	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	394632	47754562	375333	3124	5148											
PCNT	5116	broad.mit.edu	37	chr21	47832711	47832711	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggcagccccagcaacagCctcctgcatgctcagctttc	10	16	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47832711	G	G	47832711	1	3	4	0	1	0	0	0	0	0	0	0	11684	754	26	4		4	PCNT	21	47832711	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	78149	47832711	297184	3125	5149											
PCNT	5116	broad.mit.edu	37	chr21	47851463	47851463	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagctgcgggcgtctttggaGacacagcgtgctcagagcag	16	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47851463	A	A	47851463	2	1	4	1	0	0	0	0	0	0	0	1	11684	933	33	4		4	PCNT	21	47851463	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	18752	47851463	278432	3126	5150											
DIP2A	23181	broad.mit.edu	37	chr21	47987386	47987386	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtgaccaacgtggtgctgGaggagcactacctggtcgtg	16	9	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47987386	T	T	47987386	4	4	4	1	0	0	0	0	0	1	0	0	4567	1175	41	3	4830	3	DIP2A	21	47987386	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	135923	47987386	142509	3127	5151											
PRMT2	3275	broad.mit.edu	37	chr21	48084334	48084334	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctgcacactcctgcgAaagtcggtgaacattcactc	9	13	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48084334	G	G	48084334	1	3	4	0	1	0	0	0	0	0	0	0	12643	261	9	5		5	PRMT2	21	48084334	3'UTR	SNP	A	TCGA-05-4382-01A-01D-1265-08	96948	48084334	45561	3128	5152											
SLC25A18	83733	broad.mit.edu	37	chr22	18062751	18062751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagctcggctggggcagcCtgaggccctgggccctgggc	19	13	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18062751	A	A	18062751	1	1	4	0	1	0	0	0	0	0	0	0	14594	696	24	2		2	SLC25A18	22	18062751	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08		18062751	33241815	3129	5153											
DGCR2	9993	broad.mit.edu	37	chr22	19077012	19077012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccgcagctctgtgggaCcaaagggtgagaggccattg	15	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19077012	A	A	19077012	1	1	4	0	1	0	0	0	0	0	0	0	4501	522	18	3		3	DGCR2	22	19077012	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1014261	19077012	32227554	3130	5154											
TRMT2A	27037	broad.mit.edu	37	chr22	20100126	20100126	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtttcttgtagggtgttaTctgggggtcctggtgtgggt	17	5	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20100126	C	C	20100126	3	2	4	1	0	0	0	0	1	0	0	0	16690	1435	50	5	43	5	TRMT2A	22	20100126	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1023114	20100126	31204440	3131	5155											
PI4KA	5297	broad.mit.edu	37	chr22	21157610	21157610	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcacaggcggcccaaacccTgcaacacaccatcaacctgt	7	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21157610	A	A	21157610	5	1	4	1	0	0	0	0	0	0	1	0	11968	1594	55	5	5020	5	PI4KA	22	21157610	Splice_Site	SNP	T	TCGA-05-4382-01A-01D-1265-08	1057484	21157610	30146956	3132	5156											
PRAME	23532	broad.mit.edu	37	chr22	22890546	22890546	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcatagaaggttctgtcCccacagtgaggacaggggtt	15	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22890546	A	A	22890546	2	1	4	1	0	0	0	0	0	0	0	1	12525	610	22	2		2	PRAME	22	22890546	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1732936	22890546	28414020	3133	5157											
PRAME	23532	broad.mit.edu	37	chr22	22892504	22892504	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtacatttttctttcgcttCactttctcaatgaggtagga	7	8	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22892504	T	T	22892504	2	4	4	1	0	0	0	0	0	0	0	1	12525	813	29	4		4	PRAME	22	22892504	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1958	22892504	28412062	3134	5158											
PRAME	23532	broad.mit.edu	37	chr22	22899246	22899246	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttacccacaaacgccttcGttccattttgaagcgactta	5	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22899246	A	A	22899246	4	1	4	1	0	0	0	0	0	1	0	0	12525	1153	40	4	1538	4	PRAME	22	22899246	Nonsense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6742	22899246	28405320	3135	5159											
BCR	613	broad.mit.edu	37	chr22	23541479	23541479	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctagaaaggaatgtctgAggaagcatcggagactgggt	15	6	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23541479	T	T	23541479	1	4	4	0	1	0	0	0	0	0	0	0	1393	319	11	5		5	BCR	22	23541479	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	642233	23541479	27763087	3136	5160											
RGL4	266747	broad.mit.edu	37	chr22	24036526	24036526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcacagctcattcttccCtctccaggagtgcctaagcc	7	17	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24036526	A	A	24036526	1	1	4	0	1	0	0	0	0	0	0	0	13387	696	24	2		2	RGL4	22	24036526	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	495047	24036526	27268040	3137	5161											
MYO18B	84700	broad.mit.edu	37	chr22	26400910	26400910	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcaagtctttcattgtctCtggcataggcaaaaacaagc	8	9	4	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26400910	G	G	26400910	1	3	4	0	1	0	0	0	0	0	0	0	10160	928	32	4		4	MYO18B	22	26400910	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2364384	26400910	24903656	3138	5162											
SEZ6L	23544	broad.mit.edu	37	chr22	26688679	26688679	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaggaagcagctgaggccCaaggccacctccgcagccac	12	17	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26688679	G	G	26688679	2	3	4	1	0	0	0	0	0	0	0	1	14256	581	21	4		4	SEZ6L	22	26688679	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	287769	26688679	24615887	3139	5163											
CRYBB1	1414	broad.mit.edu	37	chr22	26995455	26995455	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcagagtgaggtgtggactCacttggggggctctgtggcc	18	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26995455	T	T	26995455	2	4	4	1	0	0	0	0	0	0	0	1	3942	837	29	4		4	CRYBB1	22	26995455	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	306776	26995455	24309111	3140	5164											
CRYBB1	1414	broad.mit.edu	37	chr22	27008146	27008146	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaagttttccagttcgaaGaccaccagctgcaggagaga	12	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27008146	A	A	27008146	2	1	4	1	0	0	0	0	0	0	0	1	3942	929	33	4		4	CRYBB1	22	27008146	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	12691	27008146	24296420	3141	5165											
SEC14L3	266629	broad.mit.edu	37	chr22	30857304	30857304	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagacttacagacgccGgcctctgagcaggtgaggtt	16	10	1	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30857304	A	A	30857304	2	1	4	1	0	0	0	0	0	0	0	1	14096	1103	39	4		4	SEC14L3	22	30857304	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	3849158	30857304	20447262	3142	5166											
GAL3ST1	9514	broad.mit.edu	37	chr22	30951365	30951365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagccgcggcacgggcgagtCgcggcgggcgttgagcttga	20	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30951365	A	A	30951365	3	1	4	1	0	0	0	0	1	0	0	0	6259	884	31	3	428	3	GAL3ST1	22	30951365	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	94061	30951365	20353201	3143	5167											
PLA2G3	50487	broad.mit.edu	37	chr22	31533822	31533822	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcttggaccctttctgatGtggtggccccttccgaaggt	13	12	1	1	rs149172730		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31533822	C	C	31533822	3	2	4	1	0	0	0	0	1	0	0	0	12095	1377	48	4	605	4	PLA2G3	22	31533822	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	582457	31533822	19770744	3144	5168											
LIMK2	3985	broad.mit.edu	37	chr22	31664206	31664206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtcccaccaacaaacCtgccagcagggcgagagtag	13	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31664206	A	A	31664206	1	1	4	0	1	0	0	0	0	0	0	0	8874	696	24	2		2	LIMK2	22	31664206	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	130384	31664206	19640360	3145	5169											
C22orf42	150297	broad.mit.edu	37	chr22	32546305	32546305	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaaagaaatgcatcttaCcatctccggtgtcatgaggt	9	9	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32546305	A	A	32546305	5	1	4	1	0	0	0	0	0	0	1	0	2171	521	18	3	112	3	C22orf42	22	32546305	Splice_Site	SNP	C	TCGA-05-4382-01A-01D-1265-08	882099	32546305	18758261	3146	5170											
SYN3	8224	broad.mit.edu	37	chr22	32909546	32909546	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagataatcggttcctggGtcaaaggcatttagaaagta	10	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32909546	T	T	32909546	1	4	4	0	1	0	0	0	0	0	0	0	15561	1276	44	3		3	SYN3	22	32909546	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	363241	32909546	18395020	3147	5171											
ISX	91464	broad.mit.edu	37	chr22	35481642	35481642	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctatgcatccttccaCctccacaccccaaatggggc	7	17	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35481642	T	T	35481642	3	4	4	1	0	0	0	0	1	0	0	0	7935	507	18	4	708	4	ISX	22	35481642	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2572096	35481642	15822924	3148	5172											
HMGXB4	10042	broad.mit.edu	37	chr22	35679974	35679974	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaaaaaagaagaacatgtCggcctaccaggtgttctgta	10	9	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35679974	T	T	35679974	3	4	4	1	0	0	0	0	1	0	0	0	7306	893	31	4	1253	4	HMGXB4	22	35679974	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	198332	35679974	15624592	3149	5173											
MCM5	4174	broad.mit.edu	37	chr22	35808696	35808696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggggcttgagttcccttgGgtttggggaggcggctgatg	19	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35808696	T	T	35808696	1	4	4	0	1	0	0	0	0	0	0	0	9483	1247	43	2		2	MCM5	22	35808696	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	128722	35808696	15495870	3150	5174											
APOL6	80830	broad.mit.edu	37	chr22	36052632	36052632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggattagctgttaagtggGccttatcttaccgctggtct	11	8	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36052632	T	T	36052632	1	4	4	0	1	0	0	0	0	0	0	0	812	1218	42	3		3	APOL6	22	36052632	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	243936	36052632	15251934	3151	5175											
MYH9	4627	broad.mit.edu	37	chr22	36696851	36696851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgctcctccgccccgcCctgcccctccggcgccaccc	7	26	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36696851	T	T	36696851	1	4	4	0	1	0	0	0	0	0	0	0	10136	638	22	4		4	MYH9	22	36696851	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	644219	36696851	14607715	3152	5176											
CSF2RB	1439	broad.mit.edu	37	chr22	37332548	37332548	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgccttgcccccacctcgGacctcctgatgctcaccggc	8	20	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37332548	T	T	37332548	1	4	4	0	1	0	0	0	0	0	0	0	3969	1189	41	3		3	CSF2RB	22	37332548	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	635697	37332548	13972018	3153	5177											
C1QTNF6	114904	broad.mit.edu	37	chr22	37578327	37578327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctggcgcttgaagagccgCacccagacgcggtccccgta	13	16	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37578327	A	A	37578327	2	1	4	1	0	0	0	0	0	0	0	1	1987	697	25	3		3	C1QTNF6	22	37578327	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	245779	37578327	13726239	3154	5178											
POLR2F	5435	broad.mit.edu	37	chr22	38355308	38355308	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcactctccctgtaacccaAaagtgccacctgagtctttc	5	15	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38355308	G	G	38355308	1	3	4	0	1	0	0	0	0	0	0	0	12314	29	1	5		5	POLR2F	22	38355308	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	776981	38355308	12949258	3155	5179											
GTPBP1	9567	broad.mit.edu	37	chr22	39112749	39112749	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatggccgaggctttgcccGccagaaactcttccgccaca	9	16	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39112749	A	A	39112749	3	1	4	1	0	0	0	0	1	0	0	0	6943	1087	38	4	592	4	GTPBP1	22	39112749	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	757441	39112749	12191817	3156	5180											
APOBEC3A	200315	broad.mit.edu	37	chr22	39355504	39355504	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaggcagggcagtccaGgagggctcttcctcctctgg	17	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39355504	C	C	39355504	1	2	4	0	1	0	0	0	0	0	0	0	791	1015	35	4		4	APOBEC3A	22	39355504	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	242755	39355504	11949062	3157	5181											
TAB1	10454	broad.mit.edu	37	chr22	39813767	39813767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagaagatccttgagagaCtcaagacgttagagagggaa	12	6	2	6			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39813767	A	A	39813767	3	1	4	1	0	0	0	0	1	0	0	0	15614	565	20	3	481	3	TAB1	22	39813767	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	458263	39813767	11490799	3158	5182											
TAB1	10454	broad.mit.edu	37	chr22	39813912	39813912	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaggtcagccacaggggtCggtgcattatttgacaatct	13	8	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39813912	A	A	39813912	1	1	4	0	1	0	0	0	0	0	0	0	15614	899	31	3		3	TAB1	22	39813912	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	145	39813912	11490654	3159	5183											
CACNA1I	8911	broad.mit.edu	37	chr22	40037036	40037036	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccaaggacgacgtctacgActttggggcggggcgccagg	17	11	1	0	rs59635914		TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40037036	T	T	40037036	3	4	4	1	0	0	0	0	1	0	0	0	2572	275	10	5	927	5	CACNA1I	22	40037036	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	223124	40037036	11267530	3160	5184											
MKL1	57591	broad.mit.edu	37	chr22	40827566	40827566	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcacaacagcagccttggCcatggtagctgctgaccacc	10	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40827566	G	G	40827566	1	3	4	0	1	0	0	0	0	0	0	0	9694	754	26	4		4	MKL1	22	40827566	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	790530	40827566	10477000	3161	5185											
PMM1	5372	broad.mit.edu	37	chr22	41982110	41982110	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcacccagctgctcagcgaTcttacagtagtcagagccgc	10	14	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41982110	A	A	41982110	3	1	4	1	0	0	0	0	1	0	0	0	12231	1435	50	5	641	5	PMM1	22	41982110	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1154544	41982110	9322456	3162	5186											
WBP2NL	164684	broad.mit.edu	37	chr22	42205007	42205007	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagatctgtatcctttGgggttgtagttaatgagctg	13	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42205007	T	T	42205007	1	4	4	0	1	0	0	0	0	0	0	0	17387	1363	47	2		2	WBP2NL	22	42205007	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	222897	42205007	9099559	3163	5187											
SEPT3	55964	broad.mit.edu	37	chr22	42383628	42383628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttccctccccatcagctGggagcccattgagaagtaca	8	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42383628	T	T	42383628	3	4	4	1	0	0	0	0	1	0	0	0	14178	1357	47	2	434	2	SEPT3	22	42383628	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	178621	42383628	8920938	3164	5188											
SEPT3	55964	broad.mit.edu	37	chr22	42393004	42393004	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgctgcttctcactccattCctctcagctgttattgctgc	7	15	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42393004	A	A	42393004	1	1	4	0	1	0	0	0	0	0	0	0	14178	870	30	3		3	SEPT3	22	42393004	3'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	9376	42393004	8911562	3165	5189											
TCF20	6942	broad.mit.edu	37	chr22	42609766	42609766	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctccatctaatgactctgCcataggggacttcagctgtt	9	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42609766	G	G	42609766	3	3	4	1	0	0	0	0	1	0	0	0	15812	739	26	4	4374	4	TCF20	22	42609766	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	216762	42609766	8694800	3166	5190											
PNPLA5	150379	broad.mit.edu	37	chr22	44285403	44285403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaagttgttgctcagagCcccatcgatgtagcgctgca	13	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44285403	A	A	44285403	3	1	4	1	0	0	0	0	1	0	0	0	12263	739	26	3	805	3	PNPLA5	22	44285403	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1675637	44285403	7019163	3167	5191											
PARVB	29780	broad.mit.edu	37	chr22	44527328	44527328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcgcctggcccttccaGctttttctgaccctcttctc	6	18	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44527328	T	T	44527328	1	4	4	0	1	0	0	0	0	0	0	0	11563	986	34	3		3	PARVB	22	44527328	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	241925	44527328	6777238	3168	5192											
ARHGAP8	23779	broad.mit.edu	37	chr22	45245091	45245091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcagggcaagagaggggGttgttggggctgcccccacc	17	11	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45245091	T	T	45245091	1	4	4	0	1	0	0	0	0	0	0	0	890	1276	44	3		3	ARHGAP8	22	45245091	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	717763	45245091	6059475	3169	5193											
SMC1B	27127	broad.mit.edu	37	chr22	45768189	45768189	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccctaaaaggaaagaaaaAcatgagaatattttatgata	6	4	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45768189	T	T	45768189	1	4	4	0	1	0	0	0	0	0	0	0	14896	58	2	5		5	SMC1B	22	45768189	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	523098	45768189	5536377	3170	5194											
FBLN1	2192	broad.mit.edu	37	chr22	45939456	45939456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggtcaccttcctcctGgggaagccacccttctgcag	9	18	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45939456	T	T	45939456	1	4	4	0	1	0	0	0	0	0	0	0	5755	1363	47	2		2	FBLN1	22	45939456	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	171267	45939456	5365110	3171	5195											
FBLN1	2192	broad.mit.edu	37	chr22	45943050	45943050	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttactgccggcgaggctaCcagctcagcgatgtggatgg	15	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45943050	A	A	45943050	4	1	4	1	0	0	0	0	0	1	0	0	5755	518	18	3	1453	3	FBLN1	22	45943050	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	3594	45943050	5361516	3172	5196											
BRD1	23774	broad.mit.edu	37	chr22	50170589	50170589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccacacagggcaccatgCtccctgagccggagtccagt	11	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50170589	A	A	50170589	1	1	4	0	1	0	0	0	0	0	0	0	1510	812	28	3		3	BRD1	22	50170589	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	4227539	50170589	1133977	3173	5197											
BRD1	23774	broad.mit.edu	37	chr22	50180893	50180893	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttttcaaagaaaacactGcactgttgtcttctctggaa	8	9	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50180893	C	C	50180893	1	2	4	0	1	0	0	0	0	0	0	0	1510	1334	46	4		4	BRD1	22	50180893	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	10304	50180893	1123673	3174	5198											
ZBED4	9889	broad.mit.edu	37	chr22	50278436	50278436	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagctctgtgtcctcgtctCcagtaaagccggtcagagag	11	12	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50278436	T	T	50278436	3	4	4	1	0	0	0	0	1	0	0	0	17646	855	30	4	1128	4	ZBED4	22	50278436	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	97543	50278436	1026130	3175	5199											
TTLL8	164714	broad.mit.edu	37	chr22	50485773	50485773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcattcaaggttcacaCcagccaggatgggatggagt	12	11	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50485773	A	A	50485773	1	1	4	0	1	0	0	0	0	0	0	0	16859	522	18	3		3	TTLL8	22	50485773	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	207337	50485773	818793	3176	5200											
NCAPH2	29781	broad.mit.edu	37	chr22	50960104	50960104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggggcatgaggtgggGgggtgggagtgggctttgca	22	5	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50960104	T	T	50960104	1	4	4	0	1	0	0	0	0	0	0	0	10305	1247	43	2		2	NCAPH2	22	50960104	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	474331	50960104	344462	3177	5201											
SHOX	6473	broad.mit.edu	37	chrX	601698	601698	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggtgctggctacacccagGaccaccacactgacacctgc	10	16	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	601698	C	C	601698	1	2	4	0	1	0	0	0	0	0	0	0	14401	1189	41	4		4	SHOX	23	601698	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08		601698	154668862	3178	5202											
IL3RA	3563	broad.mit.edu	37	chrX	1467573	1467574	+	Intron	INS	-	TC	TC													tctttctttctttctttcttINStctttctttctttttctttc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	1467574	TC	TC	1467573	6	5	4	0	1	1	1	0	0	0	0	0	7765	1856	64	0		0	IL3RA	23	1467573	Intron	INS	-	TCGA-05-4382-01A-01D-1265-08	865875	1467573	153802987	3179	5203											
IL3RA	3563	broad.mit.edu	37	chrX	1471274	1471274	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagggaacacgtatcgGgtgtcgtttcgatgacatct	12	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1471274	C	C	1471274	3	2	4	1	0	0	0	0	1	0	0	0	7765	1232	43	4	509	4	IL3RA	23	1471274	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3701	1471274	153799286	3180	5204											
MXRA5	25878	broad.mit.edu	37	chrX	3228223	3228223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccagatgcatgccattgGggagcgtccaggagaaacgt	13	11	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3228223	T	T	3228223	3	4	4	1	0	0	0	0	1	0	0	0	10097	1232	43	2	469	2	MXRA5	23	3228223	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1756949	3228223	152042337	3181	5205											
MXRA5	25878	broad.mit.edu	37	chrX	3238801	3238801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttccggtttgttggtcCagtgacgaggtgactgggaa	14	6	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3238801	A	A	3238801	3	1	4	1	0	0	0	0	1	0	0	0	10097	595	21	2	3573	2	MXRA5	23	3238801	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	10578	3238801	152031759	3182	5206											
TBL1X	6907	broad.mit.edu	37	chrX	9684332	9684332	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaattctaatgaccagccGtgaatgtgtagggttgcagc	12	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9684332	C	C	9684332	1	2	4	0	1	0	0	0	0	0	0	0	15761	1160	40	4		4	TBL1X	23	9684332	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	6445531	9684332	145586228	3183	5207											
TLR8	51311	broad.mit.edu	37	chrX	12939284	12939284	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttaactgatagcctatctGactttacatcttcccttcgg	5	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12939284	A	A	12939284	3	1	4	1	0	0	0	0	1	0	0	0	16080	1290	45	4	2131	4	TLR8	23	12939284	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	3254952	12939284	142331276	3184	5208											
EGFL6	25975	broad.mit.edu	37	chrX	13642113	13642113	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagccctccatgagtgatgGgttgttattcccattactca	8	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13642113	A	A	13642113	1	1	4	0	1	0	0	0	0	0	0	0	5003	1247	43	4		4	EGFL6	23	13642113	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	702829	13642113	141628447	3185	5209											
OFD1	8481	broad.mit.edu	37	chrX	13785314	13785314	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaacagcaagtgaaagaaCgaaggcagagagaagaaaga	15	4	0	6			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13785314	T	T	13785314	4	4	4	1	0	0	0	0	0	1	0	0	10933	528	19	4	2746	4	OFD1	23	13785314	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	143201	13785314	141485246	3186	5210											
GLRA2	2742	broad.mit.edu	37	chrX	14625417	14625417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttttttttttttcaGctgttaaacacaagtgagcg	6	6	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14625417	T	T	14625417	1	4	4	0	1	0	0	0	0	0	0	0	6519	986	34	3		3	GLRA2	23	14625417	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	840103	14625417	140645143	3187	5211											
FIGF	2277	broad.mit.edu	37	chrX	15376214	15376214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggaacacgttcacacaagGgggcttgaagaatgtgttgg	14	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15376214	T	T	15376214	3	4	4	1	0	0	0	0	1	0	0	0	5946	1232	43	2	681	2	FIGF	23	15376214	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	750797	15376214	139894346	3188	5212											
PIR	8544	broad.mit.edu	37	chrX	15408252	15408252	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaatagtatacatgtatacTgttttcaaagaaaaggaaaa	6	4	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15408252	A	A	15408252	1	1	4	0	1	0	0	0	0	0	0	0	12039	1595	55	5		5	PIR	23	15408252	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	32038	15408252	139862308	3189	5213											
NHS	4810	broad.mit.edu	37	chrX	17744755	17744755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaccaagcatctctttcagGaaaccaaaggcaaagccgac	8	12	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17744755	T	T	17744755	3	4	4	1	0	0	0	0	1	0	0	0	10506	1165	41	3	2593	3	NHS	23	17744755	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2336503	17744755	137525805	3190	5214											
NHS	4810	broad.mit.edu	37	chrX	17745107	17745107	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaacaaatgatccttatAgatctctatctaattcaagc	4	8	3	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17745107	G	G	17745107	3	3	4	1	0	0	0	0	1	0	0	0	10506	412	15	5	2945	5	NHS	23	17745107	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	352	17745107	137525453	3191	5215											
PPEF1	5475	broad.mit.edu	37	chrX	18796964	18796964	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttgcaggagatgcctgcCgtggaagagtaaaactggct	13	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18796964	T	T	18796964	1	4	4	0	1	0	0	0	0	0	0	0	12403	667	23	4		4	PPEF1	23	18796964	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	1051857	18796964	136473596	3192	5216											
MAP3K15	389840	broad.mit.edu	37	chrX	19389161	19389161	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtggggcctaattaagtGgttcctcaaaattttattta	8	7	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19389161	A	A	19389161	3	1	4	1	0	0	0	0	1	0	0	0	9341	1348	47	4	649	4	MAP3K15	23	19389161	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	592197	19389161	135881399	3193	5217											
MAP7D2	256714	broad.mit.edu	37	chrX	20062499	20062499	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccagagaggcctctcctcCtgaaagggcttctttcccaa	8	14	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20062499	A	A	20062499	4	1	4	1	0	0	0	0	0	1	0	0	9360	690	24	2	1499	2	MAP7D2	23	20062499	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	673338	20062499	135208061	3194	5218											
PHEX	5251	broad.mit.edu	37	chrX	22237202	22237202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcggacatgaatttacaCatggatttgataataatggt	9	4	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22237202	A	A	22237202	3	1	4	1	0	0	0	0	1	0	0	0	11914	478	17	3	1816	3	PHEX	23	22237202	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2174703	22237202	133033358	3195	5219											
MAGEB6	158809	broad.mit.edu	37	chrX	26213127	26213127	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accagtcccggtttatacccAcatctgtatgaagacgcttt	7	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26213127	T	T	26213127	2	4	4	1	0	0	0	0	0	0	0	1	9271	146	6	5		5	MAGEB6	23	26213127	Silent	SNP	A	TCGA-05-4382-01A-01D-1265-08	3975925	26213127	129057433	3196	5220											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29959652	29959652	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaggaaaggggttgtgtCaacccgttaacccacatctg	10	9	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29959652	T	T	29959652	1	4	4	0	1	0	0	0	0	0	0	0	7731	841	29	4		4	IL1RAPL1	23	29959652	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3746525	29959652	125310908	3197	5221											
DMD	1756	broad.mit.edu	37	chrX	32398633	32398633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatataggttttacctttccCcaggcaacttcagaatccaa	6	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32398633	A	A	32398633	3	1	4	1	0	0	0	0	1	0	0	0	4620	624	22	2	6550	2	DMD	23	32398633	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2438981	32398633	122871927	3198	5222											
DMD	1756	broad.mit.edu	37	chrX	32486670	32486670	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttttgacaatgctcaaccAgctgggaggagagcttcttc	11	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32486670	T	T	32486670	3	4	4	1	0	0	0	0	1	0	0	0	4620	188	7	5	8421	5	DMD	23	32486670	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	88037	32486670	122783890	3199	5223											
CXorf59	286464	broad.mit.edu	37	chrX	36122805	36122805	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatatggaaaaactgtcacAaaggtgagaagtgatatttt	10	3	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36122805	T	T	36122805	4	4	4	1	0	0	0	0	0	1	0	0	4148	131	5	5	1068	5	CXorf59	23	36122805	Nonsense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	3636135	36122805	119147755	3200	5224											
FAM47C	442444	broad.mit.edu	37	chrX	37027144	37027144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagagactggagtgtccCatctccgcccacagcctccc	8	19	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37027144	A	A	37027144	3	1	4	1	0	0	0	0	1	0	0	0	5622	594	21	2	663	2	FAM47C	23	37027144	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	904339	37027144	118243416	3201	5225											
FAM47C	442444	broad.mit.edu	37	chrX	37028190	37028190	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaagactcggatgtacagTctccgcccggagcctcccga	10	17	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37028190	C	C	37028190	2	2	4	1	0	0	0	0	0	0	0	1	5622	1664	58	5		5	FAM47C	23	37028190	Silent	SNP	T	TCGA-05-4382-01A-01D-1265-08	1046	37028190	118242370	3202	5226											
FAM47C	442444	broad.mit.edu	37	chrX	37029325	37029325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacctcaagcctaagttgGggaaaaagctaagaagtgat	12	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37029325	T	T	37029325	3	4	4	1	0	0	0	0	1	0	0	0	5622	1232	43	2	2844	2	FAM47C	23	37029325	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1135	37029325	118241235	3203	5227											
CYBB	1536	broad.mit.edu	37	chrX	37651347	37651347	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacttggaaccagggagTtccctctattcatagatacc	8	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37651347	A	A	37651347	1	1	4	0	1	0	0	0	0	0	0	0	4166	1740	60	5		5	CYBB	23	37651347	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	622022	37651347	117619213	3204	5228											
USP9X	8239	broad.mit.edu	37	chrX	41047386	41047386	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaggtaagaattatcacaGaactatattccttgtaaaca	6	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41047386	T	T	41047386	1	4	4	0	1	0	0	0	0	0	0	0	17217	957	33	3		3	USP9X	23	41047386	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	3396039	41047386	114223174	3205	5229											
USP9X	8239	broad.mit.edu	37	chrX	41055726	41055726	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagtctatatttaataaatGaagtactactttatttcccg	4	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41055726	C	C	41055726	1	2	4	0	1	0	0	0	0	0	0	0	17217	1305	45	4		4	USP9X	23	41055726	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	8340	41055726	114214834	3206	5230											
GPR82	27197	broad.mit.edu	37	chrX	41586498	41586498	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatgcctttcatgagtatCtatttcctgaaaggtttcca	7	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41586498	T	T	41586498	2	4	4	1	0	0	0	0	0	0	0	1	6777	903	32	4		4	GPR82	23	41586498	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	530772	41586498	113684062	3207	5231											
DUSP21	63904	broad.mit.edu	37	chrX	44703497	44703497	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtggccgccaacgacaAactccttctgtccagcaatc	9	14	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44703497	G	G	44703497	3	3	4	1	0	0	0	0	1	0	0	0	4860	14	1	5	121	5	DUSP21	23	44703497	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	3116999	44703497	110567063	3208	5232											
CXorf36	79742	broad.mit.edu	37	chrX	45013396	45013397	+	Nonsense_Mutation	DNP	GG	TT	TT													ctgacgaggaatctgccacaGgagcccaggtacttgggcag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	45013397	TT	TT	45013396	4	4	4	1	0	0	0	0	0	1	0	0	4139	987	35	2	589	2	CXorf36	23	45013396	Nonsense_Mutation	DNP	GG	TCGA-05-4382-01A-01D-1265-08	309899	45013396	110257164	3209	5233											
CXorf36	79742	broad.mit.edu	37	chrX	45051245	45051245	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtccaaggtgggaagcCagccagttgtcagatctgtt	14	9	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45051245	T	T	45051245	2	4	4	1	0	0	0	0	0	0	0	1	4139	581	21	4		4	CXorf36	23	45051245	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	37849	45051245	110219315	3210	5234											
USP11	8237	broad.mit.edu	37	chrX	47103906	47103906	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgttgcagacgctacgtGaccaaacccaactcagatga	8	13	2	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47103906	T	T	47103906	2	4	4	1	0	0	0	0	0	0	0	1	17168	1277	45	3		3	USP11	23	47103906	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	2052661	47103906	108166654	3211	5235											
SSX5	6758	broad.mit.edu	37	chrX	48046184	48046184	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcactgttgtgaacacttGctttcacttgctatacacct	5	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48046184	T	T	48046184	1	4	4	0	1	0	0	0	0	0	0	0	15326	1334	46	3		3	SSX5	23	48046184	3'UTR	SNP	G	TCGA-05-4382-01A-01D-1265-08	942278	48046184	107224376	3212	5236											
SSX1	6756	broad.mit.edu	37	chrX	48123044	48123044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaactgcattcatttaGgccattccttttgcttctaa	6	10	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48123044	T	T	48123044	1	4	4	0	1	0	0	0	0	0	0	0	15321	1015	35	2		2	SSX1	23	48123044	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	76860	48123044	107147516	3213	5237											
PPP1R3F	89801	broad.mit.edu	37	chrX	49143232	49143232	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatatctggcaaggagccaGcctctcccgtccttctgcag	9	16	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49143232	C	C	49143232	3	2	4	1	0	0	0	0	1	0	0	0	12476	971	34	4	2094	4	PPP1R3F	23	49143232	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1020188	49143232	106127328	3214	5238											
CLCN5	1184	broad.mit.edu	37	chrX	49778054	49778054	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacagtgtctctctccggGacttcctatctagtggaggt	12	10	3	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49778054	T	T	49778054	1	4	4	0	1	0	0	0	0	0	0	0	3497	1189	41	3		3	CLCN5	23	49778054	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	634822	49778054	105492506	3215	5239											
DGKK	139189	broad.mit.edu	37	chrX	50129634	50129634	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttatgagggacccatgcttGagaggacagaatgaggagtg	16	5	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50129634	T	T	50129634	1	4	4	0	1	0	0	0	0	0	0	0	4512	1305	45	3		3	DGKK	23	50129634	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	351580	50129634	105140926	3216	5240											
TSPYL2	64061	broad.mit.edu	37	chrX	53111967	53111967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcggtgctgagtgtcccgGctgggattctaccatcgagt	14	11	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53111967	T	T	53111967	3	4	4	1	0	0	0	0	1	0	0	0	16785	1203	42	3	289	3	TSPYL2	23	53111967	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	2982333	53111967	102158593	3217	5241											
HUWE1	10075	broad.mit.edu	37	chrX	53574724	53574724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgtggcagcaaccagggCtggagcagaagtgacagggg	18	9	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53574724	A	A	53574724	3	1	4	1	0	0	0	0	1	0	0	0	7531	797	28	3	2646	3	HUWE1	23	53574724	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	462757	53574724	101695836	3218	5242											
HUWE1	10075	broad.mit.edu	37	chrX	53644083	53644083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatacatttgggagggagCcaaggacttcacgggtagca	14	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53644083	A	A	53644083	3	1	4	1	0	0	0	0	1	0	0	0	7531	739	26	3	11575	3	HUWE1	23	53644083	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	69359	53644083	101626477	3219	5243											
MAGEH1	28986	broad.mit.edu	37	chrX	55479419	55479419	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattcggacgatgatgcagaGgttgaggctatcctcaattc	12	8	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55479419	C	C	55479419	3	2	4	1	0	0	0	0	1	0	0	0	9280	991	35	4	614	4	MAGEH1	23	55479419	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1835336	55479419	99791141	3220	5244											
MTMR8	55613	broad.mit.edu	37	chrX	63445161	63445161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccagcttccaaaagcaCacgtacacagtccagatggc	9	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63445161	A	A	63445161	3	1	4	1	0	0	0	0	1	0	0	0	10043	478	17	3		3	MTMR8	23	63445161	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	7965742	63445161	91825399	3221	5245											
OPHN1	4983	broad.mit.edu	37	chrX	67291000	67291000	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagaatggccaggaagggtCgctatgggctctccaagacc	13	12	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67291000	A	A	67291000	1	1	4	0	1	0	0	0	0	0	0	0	10969	899	31	3		3	OPHN1	23	67291000	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	3845839	67291000	87979560	3222	5246											
PDZD11	51248	broad.mit.edu	37	chrX	69508377	69508377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccctctgcaagacacagCaaccccagaaattttaccag	6	14	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69508377	A	A	69508377	1	1	4	0	1	0	0	0	0	0	0	0	11794	725	25	3		3	PDZD11	23	69508377	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2217377	69508377	85762183	3223	5247											
GDPD2	54857	broad.mit.edu	37	chrX	69646190	69646190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccatgagcccaaattgacCaagaggcctcattcatccct	6	14	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69646190	A	A	69646190	1	1	4	0	1	0	0	0	0	0	0	0	6388	609	21	2		2	GDPD2	23	69646190	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	137813	69646190	85624370	3224	5248											
CXorf65	158830	broad.mit.edu	37	chrX	70326516	70326516	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctatagggttggtggactaGagaggcagatggatttcata	14	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70326516	T	T	70326516	1	4	4	0	1	0	0	0	0	0	0	0	4150	957	33	3		3	CXorf65	23	70326516	5'Flank	SNP	G	TCGA-05-4382-01A-01D-1265-08	680326	70326516	84944044	3225	5249											
ITGB1BP2	26548	broad.mit.edu	37	chrX	70522270	70522271	+	Frame_Shift_Ins	INS	-	T	T													tctatactagggctgtactaINStgggaccacactgtgctgag							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70522271	T	T	70522270	7	5	4	1	0	1	1	0	0	0	0	0	7962	449	16	0	195	0	ITGB1BP2	23	70522270	Frame_Shift_Ins	INS	-	TCGA-05-4382-01A-01D-1265-08	195754	70522270	84748290	3226	5250											
MAGEE2	139599	broad.mit.edu	37	chrX	75003725	75003725	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctagcatcacttgctcttCctctgattctggttgctgga	8	12	5	1	rs150866998	byFrequency	TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75003725	T	T	75003725	3	4	4	1	0	0	0	0	1	0	0	0	9278	864	30	4	413	4	MAGEE2	23	75003725	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	4481455	75003725	80266835	3227	5251											
PGK1	5230	broad.mit.edu	37	chrX	77372919	77372919	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagagcccacaggtaccaAgaaccttgtagactaccaca	7	14	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77372919	T	T	77372919	1	4	4	0	1	0	0	0	0	0	0	0	11885	87	3	5		5	PGK1	23	77372919	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	2369194	77372919	77897641	3228	5252											
TBX22	50945	broad.mit.edu	37	chrX	79286474	79286474	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttcctatgacttttataGatacaatttctctatgccat	3	10	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79286474	T	T	79286474	3	4	4	1	0	0	0	0	1	0	0	0	15780	942	33	3	1457	3	TBX22	23	79286474	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	1913555	79286474	75984086	3229	5253											
FAM46D	169966	broad.mit.edu	37	chrX	79698553	79698553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacggcagtttgaatttaGtgtagattcctttcaaattg	9	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79698553	T	T	79698553	3	4	4	1	0	0	0	0	1	0	0	0	5619	1029	36	3	517	3	FAM46D	23	79698553	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	412079	79698553	75572007	3230	5254											
PCDH11X	27328	broad.mit.edu	37	chrX	91134268	91134268	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgtgtccgtacacaccaGaccggtaggtatccaagttt	9	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91134268	T	T	91134268	3	4	4	1	0	0	0	0	1	0	0	0	11602	942	33	3	3035	3	PCDH11X	23	91134268	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	11435715	91134268	64136292	3231	5255											
PCDH11X	27328	broad.mit.edu	37	chrX	91368705	91368705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccactcctctcgttccacGttgatgtagaattggcggat	9	11	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91368705	T	T	91368705	1	4	4	0	1	0	0	0	0	0	0	0	11602	1160	40	3		3	PCDH11X	23	91368705	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	234437	91368705	63901855	3232	5256											
PCDH11X	27328	broad.mit.edu	37	chrX	91369355	91369355	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggactccgagaggttcatgtCatcaaagctgtcaacaatct	9	10	5	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91369355	A	A	91369355	1	1	4	0	1	0	0	0	0	0	0	0	11602	841	29	3		3	PCDH11X	23	91369355	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	650	91369355	63901205	3233	5257											
NAP1L3	4675	broad.mit.edu	37	chrX	92927735	92927735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggttttcttcttcctcaCcctctaagggaggcatttca	8	11	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92927735	A	A	92927735	3	1	4	1	0	0	0	0	1	0	0	0	10252	507	18	3	955	3	NAP1L3	23	92927735	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1558380	92927735	62342825	3234	5258											
SRPX2	27286	broad.mit.edu	37	chrX	99921831	99921831	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacaactatggtgccaccTgtgaataccactgtgatggc	12	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99921831	C	C	99921831	3	2	4	1	0	0	0	0	1	0	0	0	15283	1580	55	5	888	5	SRPX2	23	99921831	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	6994096	99921831	55348729	3235	5259											
CENPI	2491	broad.mit.edu	37	chrX	100417903	100417903	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttataagaagtagtgttCatcattcttccattcccaga	5	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100417903	T	T	100417903	3	4	4	1	0	0	0	0	1	0	0	0	3263	826	29	4	2296	4	CENPI	23	100417903	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	496072	100417903	54852657	3236	5260											
DRP2	1821	broad.mit.edu	37	chrX	100503543	100503543	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcattgtcttttaagactGgcattgcatgcttgtgtggc	13	7	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100503543	C	C	100503543	3	2	4	1	0	0	0	0	1	0	0	0	4804	1348	47	4	1541	4	DRP2	23	100503543	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	85640	100503543	54767017	3237	5261											
DRP2	1821	broad.mit.edu	37	chrX	100515651	100515652	+	3'UTR	DNP	GG	TT	TT													atagttcatagtcctctcctGgttccggtcaaagcctttcc							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	100515652	TT	TT	100515651	1	4	4	0	1	0	0	0	0	0	0	0	4804	1363	47	2		2	DRP2	23	100515651	3'UTR	DNP	GG	TCGA-05-4382-01A-01D-1265-08	12108	100515651	54754909	3238	5262											
BTK	695	broad.mit.edu	37	chrX	100613310	100613310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcacctgcagagttgtGctgatggtagttaatgagct	12	7	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100613310	T	T	100613310	3	4	4	1	0	0	0	0	1	0	0	0	1567	1319	46	3	921	3	BTK	23	100613310	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	97659	100613310	54657250	3239	5263											
NXF5	55998	broad.mit.edu	37	chrX	101093962	101093962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaagcagcactgggagcCcaggctccagggctttcttc	12	13	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101093962	A	A	101093962	1	1	4	0	1	0	0	0	0	0	0	0	10881	638	22	2		2	NXF5	23	101093962	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	480652	101093962	54176598	3240	5264											
GLRA4	441509	broad.mit.edu	37	chrX	102977233	102977233	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagccaactgaaagtgacaGagatggcagagggctgcaga	15	7	0	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102977233	T	T	102977233	1	4	4	0	1	0	0	0	0	0	0	0	6521	957	33	3		3	GLRA4	23	102977233	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1883271	102977233	52293327	3241	5265											
GLRA4	441509	broad.mit.edu	37	chrX	102978817	102978817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcgtgcaggtctggatgtCcatggggaagttcttgaggt	15	7	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102978817	A	A	102978817	3	1	4	1	0	0	0	0	1	0	0	0	6521	855	30	3	824	3	GLRA4	23	102978817	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1584	102978817	52291743	3242	5266											
CXorf57	55086	broad.mit.edu	37	chrX	105879769	105879769	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcataagtgtttttgttctCtagtggcatattttgtgtgt	9	4	2	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105879769	A	A	105879769	1	1	4	0	1	0	0	0	0	0	0	0	4146	928	32	3		3	CXorf57	23	105879769	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2900952	105879769	49390791	3243	5267											
IRS4	8471	broad.mit.edu	37	chrX	107977664	107977664	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttcctccagctggtggGggtggaggaggaggtggtgg	21	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107977664	T	T	107977664	2	4	4	1	0	0	0	0	0	0	0	1	7912	1219	43	2		2	IRS4	23	107977664	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	2097895	107977664	47292896	3244	5268											
AMMECR1	9949	broad.mit.edu	37	chrX	109507780	109507780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaaaaagtacctatgcatCcacgtaatcttttgtctcga	6	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109507780	A	A	109507780	3	1	4	1	0	0	0	0	1	0	0	0	578	855	30	3	500	3	AMMECR1	23	109507780	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1530116	109507780	45762780	3245	5269											
CHRDL1	91851	broad.mit.edu	37	chrX	109964796	109964796	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccacactgagtattggCatcattgacaagaatttcat	6	8	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109964796	A	A	109964796	1	1	4	0	1	0	0	0	0	0	0	0	3404	725	25	3		3	CHRDL1	23	109964796	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	457016	109964796	45305764	3246	5270											
DCX	1641	broad.mit.edu	37	chrX	110574132	110574132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaggaaaagagcactcacCgtcttggtcgttacctgagt	11	9	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110574132	A	A	110574132	1	1	4	0	1	0	0	0	0	0	0	0	4351	666	23	1		1	DCX	23	110574132	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	609336	110574132	44696428	3247	5271											
LONRF3	79836	broad.mit.edu	37	chrX	118151596	118151596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcaatgaggtccttaaaGgacagactgaatggtattcg	11	7	0	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118151596	T	T	118151596	3	4	4	1	0	0	0	0	1	0	0	0	8983	991	35	2	2265	2	LONRF3	23	118151596	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	7577464	118151596	37118964	3248	5272											
THOC2	57187	broad.mit.edu	37	chrX	122758527	122758527	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtcagagaaaacctacagGagaaaaatgtttaaaaaata	7	4	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122758527	A	A	122758527	1	1	4	0	1	0	0	0	0	0	0	0	15988	1189	41	4		4	THOC2	23	122758527	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	4606931	122758527	32512033	3249	5273											
THOC2	57187	broad.mit.edu	37	chrX	122760538	122760538	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaattcaattagacactTttctaactatatgcacatta	3	7	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122760538	C	C	122760538	1	2	4	0	1	0	0	0	0	0	0	0	15988	1856	64	5		5	THOC2	23	122760538	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	2011	122760538	32510022	3250	5274											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685886	125685886	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atatacggggagacccacctCgctatgccaggcaacagtgt	11	12	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125685886	A	A	125685886	4	1	4	1	0	0	0	0	0	1	0	0	4297	893	31	3	689	3	DCAF12L1	23	125685886	Nonsense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	2925348	125685886	29584674	3251	5275											
ACTRT1	139741	broad.mit.edu	37	chrX	127185556	127185556	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgatgttatttaccacGgccttgttgagtatgcaagg	10	7	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127185556	T	T	127185556	2	4	4	1	0	0	0	0	0	0	0	1	218	1103	39	1		1	ACTRT1	23	127185556	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	1499670	127185556	28085004	3252	5276											
BCORL1	63035	broad.mit.edu	37	chrX	129171314	129171314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaattagacctctctttGctcatggagttgtccctgtc	8	11	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129171314	T	T	129171314	1	4	4	0	1	0	0	0	0	0	0	0	1392	1334	46	3		3	BCORL1	23	129171314	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1985758	129171314	26099246	3253	5277											
ARHGAP36	158763	broad.mit.edu	37	chrX	130218249	130218249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccctgctgctgcagaccCtgcagctttcaaaaatttcc	8	14	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130218249	A	A	130218249	3	1	4	1	0	0	0	0	1	0	0	0	885	680	24	2	630	2	ARHGAP36	23	130218249	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	1046935	130218249	25052311	3254	5278											
FRMD7	90167	broad.mit.edu	37	chrX	131214011	131214011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattacatttatctaaagaaGtagaaattttcagaaacctt	4	5	2	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131214011	T	T	131214011	1	4	4	0	1	0	0	0	0	0	0	0	6115	1044	36	3		3	FRMD7	23	131214011	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	995762	131214011	24056549	3255	5279											
GPC3	2719	broad.mit.edu	37	chrX	132834060	132834060	+	Intron	DEL	A	-	-													gcacataacttgccaatctgAaaaaagaaatgcaatataat							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132834060	-	-	132834060	6	5	4	0	1	1	0	1	0	0	0	0	6664	261	9	0		0	GPC3	23	132834060	Intron	DEL	A	TCGA-05-4382-01A-01D-1265-08	1620049	132834060	22436500	3256	5280											
DDX26B	203522	broad.mit.edu	37	chrX	134703357	134703357	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctccatactacctattaGtatgtatttgtgtgtatata	6	7	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134703357	T	T	134703357	5	4	4	1	0	0	0	0	0	0	1	0	4386	1043	36	3	1326	3	DDX26B	23	134703357	Splice_Site	SNP	G	TCGA-05-4382-01A-01D-1265-08	1869297	134703357	20567203	3257	5281											
SAGE1	55511	broad.mit.edu	37	chrX	134983643	134983643	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatataaatgcatggctgtGtatgcatatgaagactgtga	11	4	0	4			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134983643	C	C	134983643	1	2	4	0	1	0	0	0	0	0	0	0	13920	1392	48	4		4	SAGE1	23	134983643	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	280286	134983643	20286917	3258	5282											
SAGE1	55511	broad.mit.edu	37	chrX	134991278	134991278	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaacctcaatttgagggatCtcagttgtccacatggcata	8	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134991278	G	G	134991278	1	3	4	0	1	0	0	0	0	0	0	0	13920	928	32	4		4	SAGE1	23	134991278	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	7635	134991278	20279282	3259	5283											
SLC9A6	10479	broad.mit.edu	37	chrX	135112295	135112295	+	Missense_Mutation	SNP	G	T	T													tgtctttctcctttagggttGgtgttgattcagaccaagaa							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135112295	T	T	135112295	3	4	4	1	0	0	0	0	1	0	0	0	14832	1348	47	2	1671	2	SLC9A6	23	135112295	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	121017	135112295	20158265	3260	5284	18	2									
SLC9A6	10479	broad.mit.edu	37	chrX	135112301	135112301	+	Missense_Mutation	SNP	G	C	C													tctcctttagggttggtgttGattcagaccaagaacacttg							TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135112301	C	C	135112301	3	2	4	1	0	0	0	0	1	0	0	0	14832	1290	45	4	1677	4	SLC9A6	23	135112301	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	6	135112301	20158259	3261	5285	18	2									
GPR112	139378	broad.mit.edu	37	chrX	135427823	135427823	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatctgttctccagcaatgAgaccatttggacttctaggc	8	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135427823	T	T	135427823	3	4	4	1	0	0	0	0	1	0	0	0	6694	304	11	5	1968	5	GPR112	23	135427823	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	315522	135427823	19842737	3262	5286											
GPR112	139378	broad.mit.edu	37	chrX	135455194	135455194	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggcatggctttcagcattCactcctatgaagaaggcaca	9	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135455194	G	G	135455194	3	3	4	1	0	0	0	0	1	0	0	0	6694	826	29	4	7793	4	GPR112	23	135455194	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	27371	135455194	19815366	3263	5287											
GPR112	139378	broad.mit.edu	37	chrX	135469826	135469826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatattctgaggctgagctgGggtgggaggtgggcaggact	20	5	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135469826	T	T	135469826	1	4	4	0	1	0	0	0	0	0	0	0	6694	1247	43	2		2	GPR112	23	135469826	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	14632	135469826	19800734	3264	5288											
GPR112	139378	broad.mit.edu	37	chrX	135485335	135485335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttaatgtatcatcaccCacagtcattgattaggttgc	7	9	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135485335	A	A	135485335	1	1	4	0	1	0	0	0	0	0	0	0	6694	609	21	2		2	GPR112	23	135485335	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	15509	135485335	19785225	3265	5289											
GPR112	139378	broad.mit.edu	37	chrX	135487778	135487778	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtgaaataaaattgactaGatgatcttcagtctctgaga	10	5	3	5			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135487778	T	T	135487778	1	4	4	0	1	0	0	0	0	0	0	0	6694	957	33	3		3	GPR112	23	135487778	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2443	135487778	19782782	3266	5290											
HTATSF1	27336	broad.mit.edu	37	chrX	135592434	135592434	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcattaccaacaaatactGatccttcagatctaaatttt	2	9	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135592434	A	A	135592434	1	1	4	0	1	0	0	0	0	0	0	0	7503	1305	45	4		4	HTATSF1	23	135592434	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	104656	135592434	19678126	3267	5291											
FGF13	2258	broad.mit.edu	37	chrX	137715148	137715148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctccttgtacatggccaCtgaaaagcacacaaagatgg	10	10	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137715148	A	A	137715148	1	1	4	0	1	0	0	0	0	0	0	0	5899	579	20	3		3	FGF13	23	137715148	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2122714	137715148	17555412	3268	5292											
MCF2	4168	broad.mit.edu	37	chrX	138679031	138679031	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctactcaaaccctgaagAataatttatgtttttttaaa	4	6	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138679031	C	C	138679031	1	2	4	0	1	0	0	0	0	0	0	0	9471	261	9	5		5	MCF2	23	138679031	Intron	SNP	A	TCGA-05-4382-01A-01D-1265-08	963883	138679031	16591529	3269	5293											
CDR1	1038	broad.mit.edu	37	chrX	139866670	139866670	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgctcgtcttccaacatCtccacgtcttccagcatctc	4	17	5	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139866670	T	T	139866670	1	4	4	0	1	0	0	0	0	0	0	0	3201	928	32	4		4	CDR1	23	139866670	5'UTR	SNP	C	TCGA-05-4382-01A-01D-1265-08	1187639	139866670	15403890	3270	5294											
MAGEC3	139081	broad.mit.edu	37	chrX	140967167	140967167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaggctacaccctttcCcttcctgccgtcagccctgg	9	18	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140967167	A	A	140967167	2	1	4	1	0	0	0	0	0	0	0	1	9274	610	22	2		2	MAGEC3	23	140967167	Silent	SNP	C	TCGA-05-4382-01A-01D-1265-08	1100497	140967167	14303393	3271	5295											
MAGEC1	9947	broad.mit.edu	37	chrX	140995493	140995493	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtcctcagagtcctcctgAggggcctgctcagtctcctc	11	15	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140995493	T	T	140995493	3	4	4	1	0	0	0	0	1	0	0	0	9272	304	11	5	2309	5	MAGEC1	23	140995493	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	28326	140995493	14275067	3272	5296											
SPANXN3	139067	broad.mit.edu	37	chrX	142605327	142605327	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagctcttgccctccctAtatataccctcctggtgaca	6	16	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142605327	G	G	142605327	1	3	4	0	1	0	0	0	0	0	0	0	15108	464	16	5		5	SPANXN3	23	142605327	5'Flank	SNP	A	TCGA-05-4382-01A-01D-1265-08	1609834	142605327	12665233	3273	5297											
SLITRK4	139065	broad.mit.edu	37	chrX	142717696	142717696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcactgtaatttgattgCtgcctaaatgaagcaaatcc	6	8	1	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142717696	A	A	142717696	3	1	4	1	0	0	0	0	1	0	0	0	14859	797	28	3	1288	3	SLITRK4	23	142717696	Missense_Mutation	SNP	C	TCGA-05-4382-01A-01D-1265-08	112369	142717696	12552864	3274	5298											
SLITRK4	139065	broad.mit.edu	37	chrX	142718102	142718102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagctgagatggaggcaGgatgcgcacgtcaaaatcac	12	10	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142718102	T	T	142718102	3	4	4	1	0	0	0	0	1	0	0	0	14859	991	35	2	1694	2	SLITRK4	23	142718102	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	406	142718102	12552458	3275	5299											
FMR1	2332	broad.mit.edu	37	chrX	147022058	147022058	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagattaatctatcatTacttttataggatcattgtt	4	5	4	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147022058	G	G	147022058	1	3	4	0	1	0	0	0	0	0	0	0	6018	1769	61	5		5	FMR1	23	147022058	Intron	SNP	T	TCGA-05-4382-01A-01D-1265-08	4303956	147022058	8248502	3276	5300											
AFF2	2334	broad.mit.edu	37	chrX	147967296	147967296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatcttggttccctctacaCctttgaaggatttgcagctg	8	11	2	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147967296	T	T	147967296	1	4	4	0	1	0	0	0	0	0	0	0	357	522	18	4		4	AFF2	23	147967296	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	945238	147967296	7303264	3277	5301											
AFF2	2334	broad.mit.edu	37	chrX	148044518	148044518	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtagaaacaagttaacCagctcatctaacttgatcat	6	9	4	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148044518	T	T	148044518	1	4	4	0	1	0	0	0	0	0	0	0	357	609	21	4		4	AFF2	23	148044518	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	77222	148044518	7226042	3278	5302											
CXorf40A	91966	broad.mit.edu	37	chrX	148627288	148627288	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcagccagcggaactgtAccatcgccgtccacattgct	10	14	0	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148627288	G	G	148627288	3	3	4	1	0	0	0	0	1	0	0	0	4141	391	14	5	114	5	CXorf40A	23	148627288	Missense_Mutation	SNP	A	TCGA-05-4382-01A-01D-1265-08	582770	148627288	6643272	3279	5303											
PASD1	139135	broad.mit.edu	37	chrX	150840308	150840308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattttgttttcttgaggaCtttgactcacttggttctcc	9	8	3	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150840308	A	A	150840308	1	1	4	0	1	0	0	0	0	0	0	0	11565	580	20	3		3	PASD1	23	150840308	Intron	SNP	C	TCGA-05-4382-01A-01D-1265-08	2213020	150840308	4430252	3280	5304											
MAGEA5	4104	broad.mit.edu	37	chrX	151284099	151284099	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggagagagagggagcatgtGagaagcctcagctaaaaact	14	6	1	3			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151284099	A	A	151284099	1	1	4	0	1	0	0	0	0	0	0	0	9259	1305	45	4		4	MAGEA5	23	151284099	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	443791	151284099	3986461	3281	5305											
ZNF185	7739	broad.mit.edu	37	chrX	152083041	152083041	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagcaatcaccatgagtaTctcagctcttggaggccgca	11	12	3	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152083041	G	G	152083041	3	3	4	1	0	0	0	0	1	0	0	0	17878	1435	50	5	10	5	ZNF185	23	152083041	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	798942	152083041	3187519	3282	5306											
SSR4	6748	broad.mit.edu	37	chrX	153062964	153062964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaattccctgtcactcgaGgccaggatgtggggcgttat	12	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153062964	T	T	153062964	3	4	4	1	0	0	0	0	1	0	0	0	15311	1000	35	2	248	2	SSR4	23	153062964	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	979923	153062964	2207596	3283	5307											
L1CAM	3897	broad.mit.edu	37	chrX	153130872	153130872	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgaggatgacactggtGgtgttggcgggcaccaccac	14	12	0	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153130872	T	T	153130872	2	4	4	1	0	0	0	0	0	0	0	1	8660	1335	47	2		2	L1CAM	23	153130872	Silent	SNP	G	TCGA-05-4382-01A-01D-1265-08	67908	153130872	2139688	3284	5308											
L1CAM	3897	broad.mit.edu	37	chrX	153132065	153132065	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggctggggtggaagcaggcGagctcaaccgtgggcgaggg	22	8	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153132065	A	A	153132065	1	1	4	0	1	0	0	0	0	0	0	0	8660	1073	37	4		4	L1CAM	23	153132065	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	1193	153132065	2138495	3285	5309											
MECP2	4204	broad.mit.edu	37	chrX	153297886	153297886	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggctcagcagagtggtggGctgatggctgcacgggctca	18	10	2	2			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153297886	C	C	153297886	3	2	4	1	0	0	0	0	1	0	0	0	9516	1203	42	4	1319	4	MECP2	23	153297886	Missense_Mutation	SNP	G	TCGA-05-4382-01A-01D-1265-08	165821	153297886	1972674	3286	5310											
FLNA	2316	broad.mit.edu	37	chrX	153588029	153588029	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcctggaggagtgcagGccaggtcaggaggagcccgg	19	10	1	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153588029	A	A	153588029	1	1	4	0	1	0	0	0	0	0	0	0	5991	1218	42	4		4	FLNA	23	153588029	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	290143	153588029	1682531	3287	5311											
PLXNA3	55558	broad.mit.edu	37	chrX	153696945	153696945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacacctttgtcctgcctGggcctgccccctgtccaagc	9	19	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153696945	T	T	153696945	1	4	4	0	1	0	0	0	0	0	0	0	12216	1363	47	2		2	PLXNA3	23	153696945	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	108916	153696945	1573615	3288	5312											
DKC1	1736	broad.mit.edu	37	chrX	153993990	153993990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttaaaaaattggcagtGcactcaacactgttgtagaa	8	6	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153993990	T	T	153993990	1	4	4	0	1	0	0	0	0	0	0	0	4582	1334	46	3		3	DKC1	23	153993990	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	297045	153993990	1276570	3289	5313											
SPRY3	10251	broad.mit.edu	37	chrX	155004396	155004396	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggcccaggaaaagtctgTatgaccttccaacaaggtgg	11	10	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155004396	A	A	155004396	3	1	4	1	0	0	0	0	1	0	0	0	15225	1638	57	5	865	5	SPRY3	23	155004396	Missense_Mutation	SNP	T	TCGA-05-4382-01A-01D-1265-08	1010406	155004396	266164	3290	5314											
IL9R	3581	broad.mit.edu	37	chrX	155231119	155231119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcagagaacttgccacGgtgtttcatgctgtggctgg	14	9	1	1			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155231119	T	T	155231119	1	4	4	0	1	0	0	0	0	0	0	0	7778	1131	39	1		1	IL9R	23	155231119	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	226723	155231119	39441	3291	5315											
IL9R	3581	broad.mit.edu	37	chrX	155233587	155233587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggctgcttgggggtttGgagcagggccttgcagcctg	17	10	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155233587	T	T	155233587	1	4	4	0	1	0	0	0	0	0	0	0	7778	1363	47	2		2	IL9R	23	155233587	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08	2468	155233587	36973	3292	5316											
USP9Y	8287	broad.mit.edu	37	chrY	14833971	14833971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaacagtaactatggtagGtaacttatttatagtgttcc	8	5	0	0			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14833971	T	T	14833971	1	4	4	0	1	0	0	0	0	0	0	0	17218	1276	44	3		3	USP9Y	24	14833971	Intron	SNP	G	TCGA-05-4382-01A-01D-1265-08		14833971	44539595	3293	5317											
TPRG1L	127262	broad.mit.edu	37	chr1	3543892	3543892	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaaaaataaaaataaatAaaaacaaaaataaaaactac	0	5	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3543892	C	C	3543892	1	2	5	0	1	0	0	0	0	0	0	0	16543	377	13	5		5	TPRG1L	1	3543892	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08		3543892	245706729	1	5318											
EXOSC10	5394	broad.mit.edu	37	chr1	11151600	11151600	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggacctgcaagccggcagGgaggacaggctgttgattct	17	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11151600	A	A	11151600	3	1	5	1	0	0	0	0	1	0	0	0	5356	1232	43	4	2318	4	EXOSC10	1	11151600	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	7607708	11151600	238099021	2	5319											
TNFRSF8	943	broad.mit.edu	37	chr1	12164594	12164594	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaagttcccaggtcagTgtccccacccttaactcagg	8	14	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12164594	C	C	12164594	1	2	5	0	1	0	0	0	0	0	0	0	16422	1711	59	5		5	TNFRSF8	1	12164594	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	1012994	12164594	237086027	3	5320											
AADACL4	343066	broad.mit.edu	37	chr1	12711299	12711299	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagccgaaggcagcatcctCcagaccccggcgaggcatca	11	17	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12711299	T	T	12711299	3	4	5	1	0	0	0	0	1	0	0	0	13	855	30	4	332	4	AADACL4	1	12711299	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	546705	12711299	236539322	4	5321											
PADI4	23569	broad.mit.edu	37	chr1	17668890	17668890	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccccgcaggaggtgtacGcgtgcaggtgagaggtcctg	17	11	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17668890	A	A	17668890	3	1	5	1	0	0	0	0	1	0	0	0	11474	1087	38	4	958	4	PADI4	1	17668890	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	4957591	17668890	231581731	5	5322											
RHCE	6006	broad.mit.edu	37	chr1	25729034	25729034	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccggaagccccaccaaaTggagcttttggcccttttct	8	15	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25729034	C	C	25729034	1	2	5	0	1	0	0	0	0	0	0	0	13434	1479	51	5		5	RHCE	1	25729034	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	8060144	25729034	223521587	6	5323											
CSMD2	114784	broad.mit.edu	37	chr1	34006261	34006261	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtcagaccccaccaccttCccattggggatgagcggagg	12	13	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34006261	T	T	34006261	2	4	5	1	0	0	0	0	0	0	0	1	3979	842	30	4		4	CSMD2	1	34006261	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	8277227	34006261	215244360	7	5324											
HMGB4	127540	broad.mit.edu	37	chr1	34330081	34330081	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccaggaacccagacggcctCcatcatccttcctactcttc	5	19	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34330081	T	T	34330081	3	4	5	1	0	0	0	0	1	0	0	0	7295	855	30	4	291	4	HMGB4	1	34330081	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	323820	34330081	214920540	8	5325											
CTPS	1503	broad.mit.edu	37	chr1	41456895	41456895	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatagtgttcgggaacttaGaggacttgggctttccccag	13	8	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41456895	A	A	41456895	3	1	5	1	0	0	0	0	1	0	0	0	4056	942	33	4	632	4	CTPS	1	41456895	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	7126814	41456895	207793726	9	5326											
B4GALT2	8704	broad.mit.edu	37	chr1	44450632	44450632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgactgcttcatcttcagCgatgtggacctggtccccat	9	12	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44450632	A	A	44450632	3	1	5	1	0	0	0	0	1	0	0	0	1276	767	27	3	655	3	B4GALT2	1	44450632	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	2993737	44450632	204799989	10	5327											
RNF220	55182	broad.mit.edu	37	chr1	45088523	45088523	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcctacccagaactggttCctcctgagaaaaaggagctt	10	11	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45088523	T	T	45088523	1	4	5	0	1	0	0	0	0	0	0	0	13594	870	30	4		4	RNF220	1	45088523	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	637891	45088523	204162098	11	5328											
CC2D1B	200014	broad.mit.edu	37	chr1	52824928	52824928	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcctgccctacctggggTtgctgggacgtcaggggcca	14	14	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52824928	A	A	52824928	3	1	5	1	0	0	0	0	1	0	0	0	2753	1725	60	5	1516	5	CC2D1B	1	52824928	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	7736405	52824928	196425693	12	5329											
PTGFR	5737	broad.mit.edu	37	chr1	78959135	78959135	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttaaatttaaaagtcagcAgcacagacaaggcagatctc	8	8	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78959135	T	T	78959135	3	4	5	1	0	0	0	0	1	0	0	0	12855	188	7	5	709	5	PTGFR	1	78959135	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	26134207	78959135	170291486	13	5330											
CNN3	1266	broad.mit.edu	37	chr1	95368591	95368591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaaaaaaaaaaaaaacaCaaaaccaaaaaaccaaacct	1	8	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95368591	A	A	95368591	1	1	5	0	1	0	0	0	0	0	0	0	3643	493	17	3		3	CNN3	1	95368591	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	16409456	95368591	153882030	14	5331											
LPPR5	163404	broad.mit.edu	37	chr1	99380525	99380525	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcaaactgtgctcactgtGactttcagccttttgaggag	10	9	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99380525	T	T	99380525	1	4	5	0	1	0	0	0	0	0	0	0	9015	1305	45	3		3	LPPR5	1	99380525	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	4011934	99380525	149870096	15	5332											
PHTF1	10745	broad.mit.edu	37	chr1	114246798	114246798	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcccccgtctctgtggagTgagacacatgtgttaatgtt	12	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114246798	A	A	114246798	1	1	5	0	1	0	0	0	0	0	0	0	11957	1711	59	5		5	PHTF1	1	114246798	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	14866273	114246798	135003823	16	5333											
SYT6	148281	broad.mit.edu	37	chr1	114680333	114680333	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttcagggtcttgcggtgCacccgggtctgcagcttgca	16	11	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114680333	A	A	114680333	2	1	5	1	0	0	0	0	0	0	0	1	15597	697	25	3		3	SYT6	1	114680333	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	433535	114680333	134570288	17	5334											
SPAG17	200162	broad.mit.edu	37	chr1	118539502	118539502	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttatttgcaaggtattgTttactaagtagagactgcat	9	4	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118539502	C	C	118539502	1	2	5	0	1	0	0	0	0	0	0	0	15095	1740	60	5		5	SPAG17	1	118539502	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	3859169	118539502	130711119	18	5335											
PDE4DIP	9659	broad.mit.edu	37	chr1	144860001	144860001	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcatccaggctgtaagctGagagagaaggagtctggtaa	15	6	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144860001	A	A	144860001	1	1	5	0	1	0	0	0	0	0	0	0	11737	1305	45	4		4	PDE4DIP	1	144860001	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	26320499	144860001	104390620	19	5336											
NBPF10	100132406	broad.mit.edu	37	chr1	146252887	146252887	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagagaaacatgacagctgTcacaccctgtgtctaagctg	9	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146252887	C	C	146252887	1	2	5	0	1	0	0	0	0	0	0	0	10287	1682	58	5		5	NBPF10	1	146252887	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	1392886	146252887	102997734	20	5337											
PRKAB2	5565	broad.mit.edu	37	chr1	146639438	146639438	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccagcggataacagtgggCcgggcctgctgtgtgggctt	17	10	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146639438	T	T	146639438	2	4	5	1	0	0	0	0	0	0	0	1	12602	726	26	4		4	PRKAB2	1	146639438	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	386551	146639438	102611183	21	5338											
FMO5	2330	broad.mit.edu	37	chr1	146676269	146676269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattacagtcatttttgcaGcaggatgctgtacttctagt	8	9	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146676269	T	T	146676269	1	4	5	0	1	0	0	0	0	0	0	0	6016	986	34	3		3	FMO5	1	146676269	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	36831	146676269	102574352	22	5339											
RIT1	6016	broad.mit.edu	37	chr1	155874261	155874261	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaacccttctcctgccctCatatactggtcccgcatggc	6	16	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155874261	A	A	155874261	3	1	5	1	0	0	0	0	1	0	0	0	13497	826	29	3	397	3	RIT1	1	155874261	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	9197992	155874261	93376360	23	5340											
PMF1	11243	broad.mit.edu	37	chr1	156203573	156203573	+	Intron	DEL	T	-	-													gaaagaggcagcaattaagcTttttttttttttttctagag					rs72288194		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156203573	-	-	156203573	6	5	5	0	1	1	0	1	0	0	0	0	12228	1624	56	0		0	PMF1	1	156203573	Intron	DEL	T	TCGA-05-4384-01A-01D-1753-08	329312	156203573	93047048	24	5341											
AIM2	9447	broad.mit.edu	37	chr1	159042943	159042944	+	Intron	DNP	GG	TT	TT													attccaacaatgtgcactggGggtcatatcccagggatgcc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	159042944	TT	TT	159042943	1	4	5	0	1	0	0	0	0	0	0	0	432	1247	43	2		2	AIM2	1	159042943	Intron	DNP	GG	TCGA-05-4384-01A-01D-1753-08	2839370	159042943	90207678	25	5342											
ATF6	22926	broad.mit.edu	37	chr1	161928472	161928472	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctatgctggaaaactgaGcgtgggaccctgccagactg	13	11	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161928472	T	T	161928472	1	4	5	0	1	0	0	0	0	0	0	0	1088	986	34	3		3	ATF6	1	161928472	3'UTR	SNP	G	TCGA-05-4384-01A-01D-1753-08	2885529	161928472	87322149	26	5343											
TNN	63923	broad.mit.edu	37	chr1	175046454	175046455	+	Intron	INS	-	A	A													ttgggctcttagaatctggtINSaaaaaaaaagccagcttccc					rs140606928	by1000genomes	TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175046455	A	A	175046454	6	5	5	0	1	1	1	0	0	0	0	0	16446	1653	57	0		0	TNN	1	175046454	Intron	INS	-	TCGA-05-4384-01A-01D-1753-08	13117982	175046454	74204167	27	5344											
PAPPA2	60676	broad.mit.edu	37	chr1	176811543	176811543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttgctgctgactgtgacCtggatgagtgcacctgccgg	13	11	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176811543	A	A	176811543	3	1	5	1	0	0	0	0	1	0	0	0	11527	680	24	2	5468	2	PAPPA2	1	176811543	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	1765089	176811543	72439078	28	5345											
FAM5B	57795	broad.mit.edu	37	chr1	177249934	177249934	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacatgcggctgggcagctGgtttgacccttcctggagga	15	10	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177249934	A	A	177249934	4	1	5	1	0	0	0	0	0	1	0	0	5644	1357	47	4	1648	4	FAM5B	1	177249934	Nonsense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	438391	177249934	72000687	29	5346											
KCNT2	343450	broad.mit.edu	37	chr1	196458832	196458832	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatgtagtgcctgtaaatcGatcaattttatttgtgacaa	7	5	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196458832	T	T	196458832	1	4	5	0	1	0	0	0	0	0	0	0	8162	1073	37	3		3	KCNT2	1	196458832	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	19208898	196458832	52791789	30	5347											
KIF21B	23046	broad.mit.edu	37	chr1	200969648	200969648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccggggcggctggagaagCacccagggagtaggggctcc	20	11	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200969648	A	A	200969648	3	1	5	1	0	0	0	0	1	0	0	0	8359	710	25	3	3415	3	KIF21B	1	200969648	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	4510816	200969648	48280973	31	5348											
IPO9	55705	broad.mit.edu	37	chr1	201843200	201843200	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcttctgaactgttacaAtaccaaacaataaagttatt	4	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201843200	G	G	201843200	1	3	5	0	1	0	0	0	0	0	0	0	7869	116	4	5		5	IPO9	1	201843200	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	873552	201843200	47407421	32	5349											
PPFIA4	8497	broad.mit.edu	37	chr1	203020922	203020922	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatgggcagtgcagcagacGtgcggttctccctgggcaca	14	12	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203020922	C	C	203020922	3	2	5	1	0	0	0	0	1	0	0	0	12408	1145	40	4	21	4	PPFIA4	1	203020922	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	1177722	203020922	46229699	33	5350											
SRGAP2	23380	broad.mit.edu	37	chr1	206610485	206610485	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaagaggtccccagaggtCaggaagccaacttccctgtc	10	13	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206610485	G	G	206610485	1	3	5	0	1	0	0	0	0	0	0	0	15264	841	29	4		4	SRGAP2	1	206610485	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	3589563	206610485	42640136	34	5351											
CR1	1378	broad.mit.edu	37	chr1	207737275	207737275	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacaaggacaacttttcacCcgggcaggaagtgttctaca	11	10	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207737275	T	T	207737275	3	4	5	1	0	0	0	0	1	0	0	0	3872	623	22	4	3739	4	CR1	1	207737275	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	1126790	207737275	41513346	35	5352											
PLXNA2	5362	broad.mit.edu	37	chr1	208216417	208216417	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcattacctccagctcccGcaggacggggtggtcctcga	13	14	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208216417	A	A	208216417	3	1	5	1	0	0	0	0	1	0	0	0	12215	1086	38	4	1726	4	PLXNA2	1	208216417	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	479142	208216417	41034204	36	5353											
FLVCR1	28982	broad.mit.edu	37	chr1	213036939	213036939	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctcaaaaaaaaaaaaaaGaacataatagtttaattttc	3	4	1	1	rs72363399		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213036939	A	A	213036939	1	1	5	0	1	0	0	0	0	0	0	0	6003	957	33	4		4	FLVCR1	1	213036939	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	4820522	213036939	36213682	37	5354											
DISC1	27185	broad.mit.edu	37	chr1	231858458	231858458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacccacgtggaagaatacGctcatttatgatcagggtag	12	8	2	2	rs140257794	by1000genomes	TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231858458	T	T	231858458	1	4	5	0	1	0	0	0	0	0	0	0	4578	1102	38	3		3	DISC1	1	231858458	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	18821519	231858458	17392163	38	5355											
RYR2	6262	broad.mit.edu	37	chr1	237765338	237765338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcaggtggaaccgagtaCaaaattatttcctgcggttt	9	7	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237765338	A	A	237765338	3	1	5	1	0	0	0	0	1	0	0	0	13880	478	17	3	4748	3	RYR2	1	237765338	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	5906880	237765338	11485283	39	5356											
FMN2	56776	broad.mit.edu	37	chr1	240255621	240255621	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagagcaagtccgactccaGagcctcggtgttttccaacc	10	13	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240255621	A	A	240255621	3	1	5	1	0	0	0	0	1	0	0	0	6008	942	33	4	214	4	FMN2	1	240255621	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	2490283	240255621	8995000	40	5357											
CHML	1122	broad.mit.edu	37	chr1	241797243	241797243	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttctggatttggaggtGgagggcagaattcttcagtt	14	5	4	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241797243	A	A	241797243	3	1	5	1	0	0	0	0	1	0	0	0	3382	1348	47	4	148	4	CHML	1	241797243	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	1541622	241797243	7453378	41	5358											
CEP170	9859	broad.mit.edu	37	chr1	243354382	243354382	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttagaatcctcttctgttCtttcccatagcatttgagga	6	9	3	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243354382	A	A	243354382	3	1	5	1	0	0	0	0	1	0	0	0	3280	913	32	3	3790	3	CEP170	1	243354382	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	1557139	243354382	5896239	42	5359											
OR2B11	127623	broad.mit.edu	37	chr1	247615143	247615143	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggatgccaggatgatggCgacgttccccaacatggcca	13	13	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247615143	T	T	247615143	3	4	5	1	0	0	0	0	1	0	0	0	11082	768	27	4	814	4	OR2B11	1	247615143	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	4260761	247615143	1635478	43	5360											
OR2C3	81472	broad.mit.edu	37	chr1	247695442	247695442	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggcctgcagatggcagcGtagcggtcataggacatggt	16	8	1	1	rs148160393	byFrequency	TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247695442	A	A	247695442	2	1	5	1	0	0	0	0	0	0	0	1	11087	1140	40	4		4	OR2C3	1	247695442	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	80299	247695442	1555179	44	5361											
OR14A16	284532	broad.mit.edu	37	chr1	247978952	247978952	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaatcaacaagaagagaAtcgaatgcaaaatgcacata	6	6	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247978952	G	G	247978952	3	3	5	1	0	0	0	0	1	0	0	0	11039	101	4	5	853	5	OR14A16	1	247978952	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	283510	247978952	1271669	45	5362											
TRIM58	25893	broad.mit.edu	37	chr1	248039183	248039183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttcctttcacctggtcCaccacattctttccgcagtg	5	15	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248039183	A	A	248039183	1	1	5	0	1	0	0	0	0	0	0	0	16656	609	21	2		2	TRIM58	1	248039183	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	60231	248039183	1211438	46	5363											
OR14C36	127066	broad.mit.edu	37	chr1	248512808	248512808	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcatccctcacatcctGgtggtgtcagtcttcctcag	8	15	4	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248512808	T	T	248512808	2	4	5	1	0	0	0	0	0	0	0	1	11040	1335	47	2		2	OR14C36	1	248512808	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	473625	248512808	737813	47	5364											
OR2T6	254879	broad.mit.edu	37	chr1	248550951	248550951	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaccagaggctttaccctCatggggctcttcactcacaa	8	13	4	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248550951	T	T	248550951	2	4	5	1	0	0	0	0	0	0	0	1	11123	813	29	4		4	OR2T6	1	248550951	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	38143	248550951	699670	48	5365											
CAD	790	broad.mit.edu	37	chr2	27459779	27459779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggtgaaggatggctgGggggcccactctttgtcctg	17	8	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27459779	A	A	27459779	1	1	5	0	1	0	0	0	0	0	0	0	2591	1247	43	4		4	CAD	2	27459779	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08		27459779	215739594	49	5366											
SLC30A6	55676	broad.mit.edu	37	chr2	32422894	32422894	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catatatgctcattgaaattAagtgagtattttttattgtt	6	3	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32422894	G	G	32422894	3	3	5	1	0	0	0	0	1	0	0	0	14673	376	13	5	702	5	SLC30A6	2	32422894	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	4963115	32422894	210776479	50	5367											
CRIPT	9419	broad.mit.edu	37	chr2	46846903	46846903	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtgaatttgatgtgcatcAttccatttgcaataaaacag	8	6	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46846903	T	T	46846903	1	4	5	0	1	0	0	0	0	0	0	0	3910	232	8	5		5	CRIPT	2	46846903	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	14424009	46846903	196352470	51	5368											
TTC7A	57217	broad.mit.edu	37	chr2	47233194	47233195	+	Frame_Shift_Del	DEL	CG	-	-													gggacagtacgtcatgctctCggaggtacggccggccatgc					rs142616749		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47233195	-	-	47233194	7	5	5	1	0	1	0	1	0	0	0	0	16838	893	31	0	1233	0	TTC7A	2	47233194	Frame_Shift_Del	DEL	CG	TCGA-05-4384-01A-01D-1753-08	386291	47233194	195966179	52	5369											
GFPT1	2673	broad.mit.edu	37	chr2	69581806	69581806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtttaaatcatcctccCcaagctcaacttcagatata	3	11	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69581806	A	A	69581806	1	1	5	0	1	0	0	0	0	0	0	0	6409	638	22	2		2	GFPT1	2	69581806	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	22348612	69581806	173617567	53	5370											
DYSF	8291	broad.mit.edu	37	chr2	71791121	71791121	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtcagaggtcagctcaCggtgtggctgtggggcgtgg	19	8	3	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71791121	G	G	71791121	1	3	5	0	1	0	0	0	0	0	0	0	4899	551	19	4		4	DYSF	2	71791121	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	2209315	71791121	171408252	54	5371											
ALMS1	7840	broad.mit.edu	37	chr2	73676086	73676093	+	Frame_Shift_Del	DEL	ACTCACAC	-	-													aacagtaccctctagtgcatActcacacagagagaagctcc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73676093	-	-	73676086	7	5	5	1	0	1	0	1	0	0	0	0	535	391	14	0	2459	0	ALMS1	2	73676086	Frame_Shift_Del	DEL	ACTCACAC	TCGA-05-4384-01A-01D-1753-08	1884965	73676086	169523287	55	5372											
USP39	10713	broad.mit.edu	37	chr2	85868039	85868039	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaaatgaaaaactcatgcCcctgctctaatactactgaa	5	11	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85868039	T	T	85868039	1	4	5	0	1	0	0	0	0	0	0	0	17197	638	22	4		4	USP39	2	85868039	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	12191953	85868039	157331334	56	5373											
VPS24	51652	broad.mit.edu	37	chr2	86734733	86734733	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcctaaacagaataaataTgtcacttcggtcaactgtta	6	9	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86734733	C	C	86734733	1	2	5	0	1	0	0	0	0	0	0	0	17322	1479	51	5		5	VPS24	2	86734733	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	866694	86734733	156464640	57	5374											
MYO7B	4648	broad.mit.edu	37	chr2	128347795	128347795	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcaaacctaatgagtacaaGaagccgctggtaatgacagg	10	8	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128347795	A	A	128347795	2	1	5	1	0	0	0	0	0	0	0	1	10177	933	33	4		4	MYO7B	2	128347795	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	41613062	128347795	114851578	58	5375											
PDE11A	50940	broad.mit.edu	37	chr2	178883208	178883208	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgaccttttagacttaacAccttaaaaagtaattcttaa	3	8	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178883208	T	T	178883208	1	4	5	0	1	0	0	0	0	0	0	0	11725	174	6	5		5	PDE11A	2	178883208	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	50535413	178883208	64316165	59	5376											
ZNF804A	91752	broad.mit.edu	37	chr2	185802719	185802719	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacaagaagttgcaaaaatcGaaaggaactcagaacaaaca	7	8	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185802719	T	T	185802719	4	4	5	1	0	0	0	0	0	1	0	0	18299	1059	37	3	2610	3	ZNF804A	2	185802719	Nonsense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	6919511	185802719	57396654	60	5377											
FAM117B	150864	broad.mit.edu	37	chr2	203630353	203630353	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccactggcatgacaaccactCtgctgcagcctattgctgtg	9	14	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203630353	T	T	203630353	2	4	5	1	0	0	0	0	0	0	0	1	5456	912	32	4		4	FAM117B	2	203630353	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	17827634	203630353	39569020	61	5378											
PIKFYVE	200576	broad.mit.edu	37	chr2	209219394	209219394	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatttttgttttgtttaaaTtgttcacatgtatttcttat	5	3	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209219394	G	G	209219394	1	3	5	0	1	0	0	0	0	0	0	0	12019	1508	52	5		5	PIKFYVE	2	209219394	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	5589041	209219394	33979979	62	5379											
CPS1	1373	broad.mit.edu	37	chr2	211452744	211452744	+	Intron	DEL	G	-	-													ttggtctgttgcccatagctGggacttccctctcattctct							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	211452744	-	-	211452744	6	5	5	0	1	1	0	1	0	0	0	0	3855	1363	47	0		0	CPS1	2	211452744	Intron	DEL	G	TCGA-05-4384-01A-01D-1753-08	2233350	211452744	31746629	63	5380											
TNP1	7141	broad.mit.edu	37	chr2	217724644	217724644	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgccccgtttcctacttttCaggttgcccttacggtattt	7	13	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217724644	T	T	217724644	2	4	5	1	0	0	0	0	0	0	0	1	16456	813	29	4		4	TNP1	2	217724644	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	6271900	217724644	25474729	64	5381											
TNS1	7145	broad.mit.edu	37	chr2	218669198	218669198	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttcatctcttttggccgGcattcagcatgaccttggag	12	10	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218669198	A	A	218669198	3	1	5	1	0	0	0	0	1	0	0	0	16466	1203	42	4	19	4	TNS1	2	218669198	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	944554	218669198	24530175	65	5382											
CCDC108	255101	broad.mit.edu	37	chr2	219873855	219873855	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctccttgtgatactgccTcatgagctgctgcgagtaca	10	12	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219873855	A	A	219873855	3	1	5	1	0	0	0	0	1	0	0	0	2769	1550	54	5	1217	5	CCDC108	2	219873855	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	1204657	219873855	23325518	66	5383											
ABCB6	10058	broad.mit.edu	37	chr2	220085073	220085073	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccacacacgtggggccaGggaacactcagaggagccgt	13	13	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220085073	T	T	220085073	1	4	5	0	1	0	0	0	0	0	0	0	45	1015	35	2		2	ABCB6	2	220085073	5'Flank	SNP	G	TCGA-05-4384-01A-01D-1753-08	211218	220085073	23114300	67	5384											
COL6A3	1293	broad.mit.edu	37	chr2	238243546	238243546	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttaactgaaagatagatCagagcgtgaagataaaaaat	8	4	2	6			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238243546	A	A	238243546	1	1	5	0	1	0	0	0	0	0	0	0	3733	841	29	3		3	COL6A3	2	238243546	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	18158473	238243546	4955827	68	5385											
PPARG	5468	broad.mit.edu	37	chr3	12458450	12458450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccacgagatcatttacaCaatgctggcctccttgatga	8	11	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12458450	A	A	12458450	3	1	5	1	0	0	0	0	1	0	0	0	12395	478	17	3	1089	3	PPARG	3	12458450	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08		12458450	185563980	69	5386											
CTNNB1	1499	broad.mit.edu	37	chr3	41280817	41280817	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaatcagctggcctggtTtgatactgacctgtaaatca	9	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41280817	C	C	41280817	3	2	5	1	0	0	0	0	1	0	0	0	4050	1841	64	5	2384	5	CTNNB1	3	41280817	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	28822367	41280817	156741613	70	5387											
ALCAM	214	broad.mit.edu	37	chr3	105271223	105271223	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttactgtagtgagctttagtCatttttaatacaaagtaata	6	4	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105271223	T	T	105271223	1	4	5	0	1	0	0	0	0	0	0	0	487	841	29	4		4	ALCAM	3	105271223	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	63990406	105271223	92751207	71	5388											
ARGFX	503582	broad.mit.edu	37	chr3	121305205	121305205	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatcatagaactgtacaatCttcctgatgagaatgagata	7	6	2	4			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121305205	A	A	121305205	3	1	5	1	0	0	0	0	1	0	0	0	861	913	32	3	720	3	ARGFX	3	121305205	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	16033982	121305205	76717225	72	5389											
ITGB5	3693	broad.mit.edu	37	chr3	124515196	124515196	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtcctaacggcatcttgGcctggctcagagctaaagtg	13	10	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124515196	A	A	124515196	1	1	5	0	1	0	0	0	0	0	0	0	7968	1218	42	4		4	ITGB5	3	124515196	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	3209991	124515196	73507234	73	5390											
ZNF148	7707	broad.mit.edu	37	chr3	125007095	125007095	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaaaaaagaaaagccaAttttagacataaataaaaag	5	3	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125007095	C	C	125007095	1	2	5	0	1	0	0	0	0	0	0	0	17860	116	4	5		5	ZNF148	3	125007095	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	491899	125007095	73015335	74	5391											
UROC1	131669	broad.mit.edu	37	chr3	126229455	126229455	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccccagcacagtcccttgCgggagctgcctgcccctcgg	12	19	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126229455	T	T	126229455	1	4	5	0	1	0	0	0	0	0	0	0	17154	783	27	4		4	UROC1	3	126229455	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	1222360	126229455	71792975	75	5392											
ALG1L2	644974	broad.mit.edu	37	chr3	129817138	129817138	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttccggaagaacctgcgGgagtcgcagcagctctgatg	14	11	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129817138	A	A	129817138	1	1	5	0	1	0	0	0	0	0	0	0	518	1247	43	4		4	ALG1L2	3	129817138	3'UTR	SNP	G	TCGA-05-4384-01A-01D-1753-08	3587683	129817138	68205292	76	5393											
TRPC1	7220	broad.mit.edu	37	chr3	142496497	142496497	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcttgatatatatcgatGtttggccagtccagctctaa	8	9	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142496497	A	A	142496497	3	1	5	1	0	0	0	0	1	0	0	0	16703	1377	48	4	568	4	TRPC1	3	142496497	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	12679359	142496497	55525933	77	5394											
PLSCR4	57088	broad.mit.edu	37	chr3	145918800	145918800	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgattaaaatactgctgaGcactacaaaaattatacata	4	7	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145918800	A	A	145918800	1	1	5	0	1	0	0	0	0	0	0	0	12207	986	34	4		4	PLSCR4	3	145918800	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	3422303	145918800	52103630	78	5395											
SHOX2	6474	broad.mit.edu	37	chr3	157823827	157823827	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttccatcgccgccgcacgtCagcccggcgctcaacctctg	9	20	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157823827	T	T	157823827	1	4	5	0	1	0	0	0	0	0	0	0	14402	841	29	4		4	SHOX2	3	157823827	5'UTR	SNP	C	TCGA-05-4384-01A-01D-1753-08	11905027	157823827	40198603	79	5396											
DGKG	1608	broad.mit.edu	37	chr3	186006463	186006463	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accccagatccttctctaggAaaaagctgaagccccttgac	7	14	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186006463	T	T	186006463	1	4	5	0	1	0	0	0	0	0	0	0	4509	261	9	5		5	DGKG	3	186006463	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	28182636	186006463	12015967	80	5397											
LRRC33	375387	broad.mit.edu	37	chr3	196386667	196386667	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagagcctcgcttcggtGcccagcagcctcccgcccca	12	19	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196386667	T	T	196386667	2	4	5	1	0	0	0	0	0	0	0	1	9075	1306	46	3		3	LRRC33	3	196386667	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	10380204	196386667	1635763	81	5398											
PDGFRA	5156	broad.mit.edu	37	chr4	55156542	55156542	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgtggcacgcatgcgTgtggactcagacaatgcata	12	11	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55156542	A	A	55156542	2	1	5	1	0	0	0	0	0	0	0	1	11755	1683	59	5		5	PDGFRA	4	55156542	Silent	SNP	T	TCGA-05-4384-01A-01D-1753-08		55156542	135997734	82	5399											
KDR	3791	broad.mit.edu	37	chr4	55968660	55968660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccaggtttcctgtgatcGtgggtgccacacgctctaga	11	12	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55968660	T	T	55968660	3	4	5	1	0	0	0	0	1	0	0	0	8209	1145	40	3	2135	3	KDR	4	55968660	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	812118	55968660	135185616	83	5400											
AMTN	401138	broad.mit.edu	37	chr4	71388390	71388390	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagatagacatgtttgcaTtggtggcaacctggatataa	10	5	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71388390	A	A	71388390	1	1	5	0	1	0	0	0	0	0	0	0	590	1508	52	5		5	AMTN	4	71388390	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	15419730	71388390	119765886	84	5401											
SHROOM3	57619	broad.mit.edu	37	chr4	77675651	77675651	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggccaccactggcaggaAcgcaagggctggtcacagac	13	14	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77675651	T	T	77675651	3	4	5	1	0	0	0	0	1	0	0	0	14408	43	2	5	4041	5	SHROOM3	4	77675651	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	6287261	77675651	113478625	85	5402											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99341345	99341345	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatatgatagtcttaaTgtgcctctagttgaaaaagg	8	5	3	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99341345	C	C	99341345	1	2	5	0	1	0	0	0	0	0	0	0	13147	1479	51	5		5	RAP1GDS1	4	99341345	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	21665694	99341345	91812931	86	5403											
QRFPR	84109	broad.mit.edu	37	chr4	122261661	122261661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttcattttaaaaggatGcacaagtccctggtgccttt	7	11	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122261661	T	T	122261661	3	4	5	1	0	0	0	0	1	0	0	0	12986	1319	46	3	870	3	QRFPR	4	122261661	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	22920316	122261661	68892615	87	5404											
BBS7	55212	broad.mit.edu	37	chr4	122774156	122774156	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcattatcaaaactataCacttccaccattccgtcatc	2	13	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122774156	T	T	122774156	2	4	5	1	0	0	0	0	0	0	0	1	1346	465	17	4		4	BBS7	4	122774156	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	512495	122774156	68380120	88	5405											
LRBA	987	broad.mit.edu	37	chr4	151826924	151826924	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaatcctcttaattaTcactctcctcacgcacaaaa	2	12	4	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151826924	A	A	151826924	1	1	5	0	1	0	0	0	0	0	0	0	9018	1450	50	5		5	LRBA	4	151826924	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	29052768	151826924	39327352	89	5406											
CYP4V2	285440	broad.mit.edu	37	chr4	187130126	187130126	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctgttcctttatttgccCgtagtgttagtgaagattgt	9	7	1	2	rs138444697		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187130126	T	T	187130126	3	4	5	1	0	0	0	0	1	0	0	0	4225	652	23	4	1232	4	CYP4V2	4	187130126	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	35303202	187130126	4024150	90	5407											
BRD9	65980	broad.mit.edu	37	chr5	865601	865602	+	Missense_Mutation	DNP	GC	AA	AA													cgacggccgagagccgccgcGctccgcctgtgcttcgtgca							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	865602	AA	AA	865601	3	1	5	1	0	0	0	0	1	0	0	0	1516	1087	38	4	180	4	BRD9	5	865601	Missense_Mutation	DNP	GC	TCGA-05-4384-01A-01D-1753-08		865601	180049659	91	5408											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239103	5239103	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggtaacactgtagccccGctgtgcacatattaggtatc	10	10	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5239103	A	A	5239103	1	1	5	0	1	0	0	0	0	0	0	0	261	1102	38	4		4	ADAMTS16	5	5239103	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	4373502	5239103	175676157	92	5409											
CDH10	1008	broad.mit.edu	37	chr5	24493114	24493114	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttaagatcttcattttgtCtgaagttgttcaaaataatt	5	5	4	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24493114	A	A	24493114	1	1	5	0	1	0	0	0	0	0	0	0	3126	928	32	3		3	CDH10	5	24493114	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	19254011	24493114	156422146	93	5410											
PDZD2	23037	broad.mit.edu	37	chr5	32074612	32074612	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgcaagagatccgaggctGaggccaagcccagtggctca	13	12	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32074612	A	A	32074612	3	1	5	1	0	0	0	0	1	0	0	0	11795	1291	45	4	3466	4	PDZD2	5	32074612	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	7581498	32074612	148840648	94	5411											
NUP155	9631	broad.mit.edu	37	chr5	37327889	37327889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtataccttgtacacaCataagaaaaacaaatctctt	5	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37327889	A	A	37327889	1	1	5	0	1	0	0	0	0	0	0	0	10851	493	17	3		3	NUP155	5	37327889	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	5253277	37327889	143587371	95	5412											
ISL1	3670	broad.mit.edu	37	chr5	50683340	50683340	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggttgtacgggatcaaaTgcgccaagtgcagcatcggc	13	10	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683340	A	A	50683340	3	1	5	1	0	0	0	0	1	0	0	0	7926	1464	51	5	245	5	ISL1	5	50683340	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	13355451	50683340	130231920	96	5413											
HTR1A	3350	broad.mit.edu	37	chr5	63257560	63257560	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccatgcctgcgcgcccgGcgcgggaagggggagggaag	19	12	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63257560	T	T	63257560	1	4	5	0	1	0	0	0	0	0	0	0	7506	1218	42	3		3	HTR1A	5	63257560	5'Flank	SNP	G	TCGA-05-4384-01A-01D-1753-08	12574220	63257560	117657700	97	5414											
VCAN	1462	broad.mit.edu	37	chr5	82838147	82838147	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacagtcccttggtgctaaCgtttatatgtatgtaatttt	7	6	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82838147	G	G	82838147	1	3	5	0	1	0	0	0	0	0	0	0	17265	551	19	4		4	VCAN	5	82838147	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	19580587	82838147	98077113	98	5415											
GLRX	2745	broad.mit.edu	37	chr5	95152247	95152247	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccaatctgctttagccgCgtcagcagttccccactctg	8	16	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95152247	A	A	95152247	2	1	5	1	0	0	0	0	0	0	0	1	6523	755	27	3		3	GLRX	5	95152247	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	12314100	95152247	85763013	99	5416											
ACSL6	23305	broad.mit.edu	37	chr5	131329711	131329711	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccgcagtggaacgtctcCtatcctgctcacctctactt	6	15	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131329711	T	T	131329711	1	4	5	0	1	0	0	0	0	0	0	0	181	696	24	4		4	ACSL6	5	131329711	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	36177464	131329711	49585549	100	5417											
SLC22A4	6583	broad.mit.edu	37	chr5	131679507	131679507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacagaagaaaatcccaaGgttctaataactgcattctg	8	8	2	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131679507	T	T	131679507	3	4	5	1	0	0	0	0	1	0	0	0	14570	991	35	2	1673	2	SLC22A4	5	131679507	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	349796	131679507	49235753	101	5418											
FBXL21	26223	broad.mit.edu	37	chr5	135273121	135273121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtctgtctaggttgacaGtagcgctgagtcagcagaag	13	7	3	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135273121	T	T	135273121	3	4	5	1	0	0	0	0	1	0	0	0	5775	1029	36	3	380	3	FBXL21	5	135273121	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	3593614	135273121	45642139	102	5419											
PCDHGA6	56109	broad.mit.edu	37	chr5	140755360	140755360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccccgccctccccacagaCggttccactggcgtggagct	10	18	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140755360	A	A	140755360	3	1	5	1	0	0	0	0	1	0	0	0	11652	535	19	3	1712	3	PCDHGA6	5	140755360	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	5482239	140755360	40159900	103	5420											
TCERG1	10915	broad.mit.edu	37	chr5	145857963	145857963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatgtcgttcttcagtacCctcatctccctacttgtaac	4	14	4	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145857963	T	T	145857963	1	4	5	0	1	0	0	0	0	0	0	0	15807	638	22	4		4	TCERG1	5	145857963	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	5102603	145857963	35057297	104	5421											
SLC36A2	153201	broad.mit.edu	37	chr5	150722498	150722498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgttggggttggcttctaGtccatgcatcaccgtgtccc	13	12	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150722498	T	T	150722498	3	4	5	1	0	0	0	0	1	0	0	0	14708	1020	36	3	1088	3	SLC36A2	5	150722498	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	4864535	150722498	30192762	105	5422											
EBF1	1879	broad.mit.edu	37	chr5	158422210	158422211	+	Intron	INS	-	T	T													atgccaggtgctaccccagaINSttttcctttttctacttctc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158422211	T	T	158422210	6	5	5	0	1	1	1	0	0	0	0	0	4920	348	12	0		0	EBF1	5	158422210	Intron	INS	-	TCGA-05-4384-01A-01D-1753-08	7699712	158422210	22493050	106	5423											
SLIT3	6586	broad.mit.edu	37	chr5	168176728	168176728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagcccagctctcctagcCaggaaggaggaggtctcagg	14	12	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168176728	A	A	168176728	1	1	5	0	1	0	0	0	0	0	0	0	14855	609	21	2		2	SLIT3	5	168176728	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	9754518	168176728	12738532	107	5424											
FAM153B	202134	broad.mit.edu	37	chr5	175528434	175528434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaatgtcttctagatatcGgggccattgtctcaagtact	9	9	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175528434	T	T	175528434	1	4	5	0	1	0	0	0	0	0	0	0	5507	1131	39	1		1	FAM153B	5	175528434	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	7351706	175528434	5386826	108	5425											
GPRIN1	114787	broad.mit.edu	37	chr5	176023823	176023823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagatcactcggccgtggGtcccgcccgcgagcagcacc	14	17	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176023823	T	T	176023823	3	4	5	1	0	0	0	0	1	0	0	0	6795	1261	44	3	17	3	GPRIN1	5	176023823	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	495389	176023823	4891437	109	5426											
SQSTM1	8878	broad.mit.edu	37	chr5	179260106	179260106	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtctctccagagagttccAgcacagaggagaagagcagc	12	12	1	4			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179260106	G	G	179260106	3	3	5	1	0	0	0	0	1	0	0	0	15248	188	7	5	851	5	SQSTM1	5	179260106	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	3236283	179260106	1655154	110	5427											
SLC17A2	10246	broad.mit.edu	37	chr6	25914763	25914763	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtgtatctccaacacctAaaacaatacctgccacttga	5	13	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25914763	G	G	25914763	1	3	5	0	1	0	0	0	0	0	0	0	14530	377	13	5		5	SLC17A2	6	25914763	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08		25914763	145200304	111	5428											
HIST1H2BJ	8970	broad.mit.edu	37	chr6	27100390	27100390	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggtgtcagggtggacctgcTtcagaaccttgtacacatag	12	10	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27100390	G	G	27100390	3	3	5	1	0	0	0	0	1	0	0	0	7216	1609	56	5	244	5	HIST1H2BJ	6	27100390	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	1185627	27100390	144014677	112	5429											
SKIV2L	6499	broad.mit.edu	37	chr6	31930285	31930285	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacttccgaaacacattcggGgatgtggggctgctcaccgg	14	11	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31930285	C	C	31930285	2	2	5	1	0	0	0	0	0	0	0	1	14472	1219	43	4		4	SKIV2L	6	31930285	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	4829895	31930285	139184782	113	5430											
SLC26A8	116369	broad.mit.edu	37	chr6	35945219	35945219	+	Intron	DEL	C	-	-													aacactgggctgtcctgattCttttttttttttttttaata							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35945219	-	-	35945219	6	5	5	0	1	1	0	1	0	0	0	0	14637	928	32	0		0	SLC26A8	6	35945219	Intron	DEL	C	TCGA-05-4384-01A-01D-1753-08	4014934	35945219	135169848	114	5431											
CUL7	9820	broad.mit.edu	37	chr6	43017790	43017790	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagaggagttcccaccActcagccagggtcaggtgtt	13	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43017790	G	G	43017790	3	3	5	1	0	0	0	0	1	0	0	0	4093	159	6	5	3700	5	CUL7	6	43017790	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	7072571	43017790	128097277	115	5432											
DST	667	broad.mit.edu	37	chr6	56418066	56418066	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatggccagagagtctctActtgctctttatacttaagg	8	10	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56418066	G	G	56418066	3	3	5	1	0	0	0	0	1	0	0	0	4823	391	14	5	8032	5	DST	6	56418066	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	13400276	56418066	114697001	116	5433											
TTK	7272	broad.mit.edu	37	chr6	80746173	80746173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcattgtttaatattacaGtggatttttattttaaaggc	7	3	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80746173	T	T	80746173	1	4	5	0	1	0	0	0	0	0	0	0	16846	1044	36	3		3	TTK	6	80746173	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	24328107	80746173	90368894	117	5434											
FAM46A	55603	broad.mit.edu	37	chr6	82461603	82461603	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtggggaagttgccgcgccCgtgaatcggaatggtctcgc	16	11	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82461603	G	G	82461603	3	3	5	1	0	0	0	0	1	0	0	0	5616	652	23	4	1080	4	FAM46A	6	82461603	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	1715430	82461603	88653464	118	5435											
GRIK2	2898	broad.mit.edu	37	chr6	102250223	102250223	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taggcacattgggaaggcctCacaggcagaataactttcaa	10	9	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102250223	G	G	102250223	2	3	5	1	0	0	0	0	0	0	0	1	6840	813	29	4		4	GRIK2	6	102250223	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	19788620	102250223	68864844	119	5436											
SCML4	256380	broad.mit.edu	37	chr6	108076719	108076719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagcacggatatgagccCactggctagaagctttgctc	12	10	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108076719	A	A	108076719	1	1	5	0	1	0	0	0	0	0	0	0	14024	609	21	2		2	SCML4	6	108076719	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	5826496	108076719	63038348	120	5437											
ARMC2	84071	broad.mit.edu	37	chr6	109249196	109249196	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttgcttagctactgatAtaaggaaatttatgaaatga	8	4	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109249196	G	G	109249196	1	3	5	0	1	0	0	0	0	0	0	0	955	464	16	5		5	ARMC2	6	109249196	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	1172477	109249196	61865871	121	5438											
HS3ST5	222537	broad.mit.edu	37	chr6	114405781	114405781	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagaattgttacagagcaAtgctaggtaggttaacataa	11	4	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114405781	T	T	114405781	1	4	5	0	1	0	0	0	0	0	0	0	7435	116	4	5		5	HS3ST5	6	114405781	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	5156585	114405781	56709286	122	5439											
C6orf170	221322	broad.mit.edu	37	chr6	121411927	121411927	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattaaatgagtgcctagaaAaagtatctaatattaagcaa	7	4	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121411927	G	G	121411927	1	3	5	0	1	0	0	0	0	0	0	0	2367	29	1	5		5	C6orf170	6	121411927	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	7006146	121411927	49703140	123	5440											
ECT2L	345930	broad.mit.edu	37	chr6	139135693	139135693	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggactaacaagcaacgtcaAgaattcttattcgcaatttt	6	8	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139135693	G	G	139135693	2	3	5	1	0	0	0	0	0	0	0	1	4942	69	3	5		5	ECT2L	6	139135693	Silent	SNP	A	TCGA-05-4384-01A-01D-1753-08	17723766	139135693	31979374	124	5441											
C6orf211	79624	broad.mit.edu	37	chr6	151789411	151789411	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcaatgtccccccatcccGctacataatggagttttgtt	7	12	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151789411	A	A	151789411	1	1	5	0	1	0	0	0	0	0	0	0	2377	1102	38	4		4	C6orf211	6	151789411	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	12653718	151789411	19325656	125	5442											
HOXA3	3200	broad.mit.edu	37	chr7	27147494	27147494	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccaaagaaaaaaggtgggTggggggagactctcctggcg	16	7	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27147494	G	G	27147494	1	3	5	0	1	0	0	0	0	0	0	0	7360	1711	59	5		5	HOXA3	7	27147494	3'UTR	SNP	T	TCGA-05-4384-01A-01D-1753-08		27147494	131991169	126	5443											
CRHR2	1395	broad.mit.edu	37	chr7	30721669	30721669	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagggacctggcggcgggaGagagcgcagtagggctcaga	20	8	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30721669	T	T	30721669	1	4	5	0	1	0	0	0	0	0	0	0	3904	957	33	3		3	CRHR2	7	30721669	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	3574175	30721669	128416994	127	5444											
ZNF804B	219578	broad.mit.edu	37	chr7	88964342	88964342	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttgaagagtaaccacatCagcatgaccagcaaggtttc	8	9	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88964342	A	A	88964342	2	1	5	1	0	0	0	0	0	0	0	1	18300	816	29	3		3	ZNF804B	7	88964342	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	58242673	88964342	70174321	128	5445											
ZAN	7455	broad.mit.edu	37	chr7	100349509	100349509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaaaagcccaccattcCcacagaaaaacccaccatct	3	16	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349509	A	A	100349509	3	1	5	1	0	0	0	0	1	0	0	0	17640	623	22	2	1831	2	ZAN	7	100349509	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	11385167	100349509	58789154	129	5446											
CDHR3	222256	broad.mit.edu	37	chr7	105653218	105653218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttgaattgcagttaaaGtagaggtgtctagcccaggg	12	6	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105653218	T	T	105653218	1	4	5	0	1	0	0	0	0	0	0	0	3150	1044	36	3		3	CDHR3	7	105653218	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	5303709	105653218	53485445	130	5447											
LAMB1	3912	broad.mit.edu	37	chr7	107601973	107601973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgaagcccgttgagctgCcaaaccaccgtcacactgac	8	14	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107601973	A	A	107601973	1	1	5	0	1	0	0	0	0	0	0	0	8682	754	26	3		3	LAMB1	7	107601973	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	1948755	107601973	51536690	131	5448											
FAM71F1	84691	broad.mit.edu	37	chr7	128371179	128371179	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatttgagccacccttccGcactggggagaatctatgca	9	12	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128371179	A	A	128371179	1	1	5	0	1	0	0	0	0	0	0	0	5663	1102	38	4		4	FAM71F1	7	128371179	3'UTR	SNP	G	TCGA-05-4384-01A-01D-1753-08	20769206	128371179	30767484	132	5449											
SMO	6608	broad.mit.edu	37	chr7	128846405	128846405	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcggcctggtgctcatcgTgggaggctacttcctcatcc	11	13	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128846405	C	C	128846405	3	2	5	1	0	0	0	0	1	0	0	0	14914	1696	59	5	1263	5	SMO	7	128846405	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	475226	128846405	30292258	133	5450											
PLXNA4	91584	broad.mit.edu	37	chr7	131887475	131887475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactggctctcctgggcaGggcagtgctggcgcagggtg	18	12	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131887475	T	T	131887475	3	4	5	1	0	0	0	0	1	0	0	0	12217	1000	35	2	3252	2	PLXNA4	7	131887475	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	3041070	131887475	27251188	134	5451											
CHRM2	1129	broad.mit.edu	37	chr7	136623313	136623313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctcccatgccgctggcCccaccatagccgctgcccag	8	21	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136623313	A	A	136623313	1	1	5	0	1	0	0	0	0	0	0	0	3408	638	22	2		2	CHRM2	7	136623313	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	4735838	136623313	22515350	135	5452											
TRPV5	56302	broad.mit.edu	37	chr7	142630623	142630623	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacaggtctaggatgacagCaactgagcaagagatggggt	14	6	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142630623	G	G	142630623	1	3	5	0	1	0	0	0	0	0	0	0	16724	725	25	4		4	TRPV5	7	142630623	5'UTR	SNP	C	TCGA-05-4384-01A-01D-1753-08	6007310	142630623	16508040	136	5453											
KEL	3792	broad.mit.edu	37	chr7	142641808	142641808	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgatgagggcatcccggatCgcagtgaataatttcatggc	13	8	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142641808	A	A	142641808	2	1	5	1	0	0	0	0	0	0	0	1	8212	871	31	3		3	KEL	7	142641808	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	11185	142641808	16496855	137	5454											
CLCN1	1180	broad.mit.edu	37	chr7	143029825	143029825	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctcccagttgatgccCcgcgaagccatcagtacttt	7	15	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143029825	A	A	143029825	2	1	5	1	0	0	0	0	0	0	0	1	3493	610	22	2		2	CLCN1	7	143029825	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	388017	143029825	16108838	138	5455											
SSPO	23145	broad.mit.edu	37	chr7	149480000	149480000	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgagggcctcagtgtgCgccgagcttcctctgccttt	13	14	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149480000	T	T	149480000	3	4	5	1	0	0	0	0	1	0	0	0	15307	768	27	4	2022	4	SSPO	7	149480000	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	6450175	149480000	9658663	139	5456											
SSPO	23145	broad.mit.edu	37	chr7	149480793	149480793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcccagccaaccccaCccaggctcctcccctcctcc	5	25	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149480793	T	T	149480793	1	4	5	0	1	0	0	0	0	0	0	0	15307	522	18	4		4	SSPO	7	149480793	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	793	149480793	9657870	140	5457											
ACCN3	9311	broad.mit.edu	37	chr7	150746514	150746514	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacttcaccacggtgagctGacctccctacctatcctgcc	7	17	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150746514	T	T	150746514	1	4	5	0	1	0	0	0	0	0	0	0	130	1305	45	3		3	ACCN3	7	150746514	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	1265721	150746514	8392149	141	5458											
MLL3	58508	broad.mit.edu	37	chr7	151962175	151962175	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccaacctgcacgttttaAtggagtaaccgctatatcca	7	11	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151962175	C	C	151962175	3	2	5	1	0	0	0	0	1	0	0	0	9715	98	4	5	13811	5	MLL3	7	151962175	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	1215661	151962175	7176488	142	5459											
CSMD1	64478	broad.mit.edu	37	chr8	2813348	2813348	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtaaagttagcacatgtgtCtagagaaattaatagattaa	8	3	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2813348	T	T	2813348	1	4	5	0	1	0	0	0	0	0	0	0	3978	928	32	4		4	CSMD1	8	2813348	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08		2813348	143550674	143	5460											
DEFA5	1670	broad.mit.edu	37	chr8	6913943	6913943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggtccaggaagattaaGtaaagtcactcaagtgaggt	11	6	3	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6913943	T	T	6913943	1	4	5	0	1	0	0	0	0	0	0	0	4425	1044	36	3		3	DEFA5	8	6913943	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	4100595	6913943	139450079	144	5461											
KCNB2	9312	broad.mit.edu	37	chr8	73531146	73531146	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgataccgctactagGgactgatgaaatggagaagc	11	8	1	4	rs142309394	by1000genomes	TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73531146	T	T	73531146	1	4	5	0	1	0	0	0	0	0	0	0	8083	1247	43	2		2	KCNB2	8	73531146	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	66617203	73531146	72832876	145	5462											
ZFHX4	79776	broad.mit.edu	37	chr8	77763345	77763345	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaccgtcatgtctacaaGtatcgctgtaaccattgtag	8	10	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763345	A	A	77763345	2	1	5	1	0	0	0	0	0	0	0	1	17761	1020	36	4		4	ZFHX4	8	77763345	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	4232199	77763345	68600677	146	5463											
ZFHX4	79776	broad.mit.edu	37	chr8	77776174	77776174	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttatatgcagaaagtgCcagatgatgtttactgatga	11	4	0	5			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77776174	A	A	77776174	4	1	5	1	0	0	0	0	0	1	0	0	17761	747	26	3	10262	3	ZFHX4	8	77776174	Nonsense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	12829	77776174	68587848	147	5464											
CA2	760	broad.mit.edu	37	chr8	86386486	86386486	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattgtgagaaaaagaccAttgaataaaatctgtcagct	7	5	2	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86386486	G	G	86386486	1	3	5	0	1	0	0	0	0	0	0	0	2542	232	8	5		5	CA2	8	86386486	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	8610312	86386486	59977536	148	5465											
SLC7A13	157724	broad.mit.edu	37	chr8	87242172	87242172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtactcagcaaggagcagaGcttggccagcaactacccct	10	13	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87242172	T	T	87242172	3	4	5	1	0	0	0	0	1	0	0	0	14809	971	34	3	1093	3	SLC7A13	8	87242172	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	855686	87242172	59121850	149	5466											
CSMD3	114788	broad.mit.edu	37	chr8	114388914	114388914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatgggagttgacacccGccacaaggaccgaaaggttc	11	12	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114388914	T	T	114388914	1	4	5	0	1	0	0	0	0	0	0	0	3980	1102	38	3		3	CSMD3	8	114388914	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	27146742	114388914	31975108	150	5467											
FER1L6	654463	broad.mit.edu	37	chr8	125047562	125047562	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtctgtgcaagcaaaagtCgacgtgtacctgtggctggg	15	8	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125047562	A	A	125047562	2	1	5	1	0	0	0	0	0	0	0	1	5872	871	31	3		3	FER1L6	8	125047562	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	10658648	125047562	21316460	151	5468											
FAM135B	51059	broad.mit.edu	37	chr8	139255166	139255166	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaagttttgaagcaacTgccccacacaggccttacct	7	12	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139255166	A	A	139255166	1	1	5	0	1	0	0	0	0	0	0	0	5495	1595	55	5		5	FAM135B	8	139255166	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	14207604	139255166	7108856	152	5469											
TRAPPC9	83696	broad.mit.edu	37	chr8	141285635	141285635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccctcgcctgacttctaCtgacttcaactgaatccaca	5	15	2	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141285635	A	A	141285635	1	1	5	0	1	0	0	0	0	0	0	0	16589	580	20	3		3	TRAPPC9	8	141285635	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	2030469	141285635	5078387	153	5470											
PARP10	84875	broad.mit.edu	37	chr8	145058247	145058247	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggcgttgccagggagcActgggagggcctcggtaggg	21	8	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145058247	G	G	145058247	3	3	5	1	0	0	0	0	1	0	0	0	11549	159	6	5	1391	5	PARP10	8	145058247	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	3772612	145058247	1305775	154	5471											
TAF1L	138474	broad.mit.edu	37	chr9	32633525	32633525	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagatcctgaggtgtgcGcataaaaaacaactctccac	9	10	1	2	rs147409173		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32633525	A	A	32633525	3	1	5	1	0	0	0	0	1	0	0	0	15642	1087	38	4	3431	4	TAF1L	9	32633525	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08		32633525	108579906	155	5472											
CHMP5	51510	broad.mit.edu	37	chr9	33267931	33267931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatttctacctctagcagGtttaactaaaagagaaatgg	7	7	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33267931	T	T	33267931	1	4	5	0	1	0	0	0	0	0	0	0	3390	1276	44	3		3	CHMP5	9	33267931	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	634406	33267931	107945500	156	5473											
TRPM3	80036	broad.mit.edu	37	chr9	73213257	73213257	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactttgatagcaggcccaaAtgaattatttccctctatct	6	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73213257	T	T	73213257	1	4	5	0	1	0	0	0	0	0	0	0	16712	116	4	5		5	TRPM3	9	73213257	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	39945326	73213257	68000174	157	5474											
TRPM6	140803	broad.mit.edu	37	chr9	77377455	77377455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaacctcagtctggatgtCctgttcagttgccagcacat	9	11	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377455	A	A	77377455	3	1	5	1	0	0	0	0	1	0	0	0	16715	855	30	3	1992	3	TRPM6	9	77377455	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	4164198	77377455	63835976	158	5475											
SEMA4D	10507	broad.mit.edu	37	chr9	91995956	91995956	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccaaaggaaatgggacgtcGaggagtcactcacccgggca	13	12	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91995956	A	A	91995956	1	1	5	0	1	0	0	0	0	0	0	0	14147	1073	37	4		4	SEMA4D	9	91995956	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	14618501	91995956	49217475	159	5476											
PTCH1	5727	broad.mit.edu	37	chr9	98268935	98268935	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagtcgcggcccgcgcgCccacgcccgcttgcgcgcac	16	19	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98268935	T	T	98268935	1	4	5	0	1	0	0	0	0	0	0	0	12836	754	26	4		4	PTCH1	9	98268935	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	6272979	98268935	42944496	160	5477											
GPR107	57720	broad.mit.edu	37	chr9	132841832	132841832	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggactgcatgagcttggcaCagggcctacacgcagcgtgc	14	12	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132841832	T	T	132841832	1	4	5	0	1	0	0	0	0	0	0	0	6688	493	17	4		4	GPR107	9	132841832	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	34572897	132841832	8371599	161	5478											
LAMC3	10319	broad.mit.edu	37	chr9	133946977	133946977	+	Frame_Shift_Del	DEL	G	-	-													tctgctgggagaggccccaaGgggggacgtctaccagggcc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133946977	-	-	133946977	7	5	5	1	0	1	0	1	0	0	0	0	8688	1000	35	0	3246	0	LAMC3	9	133946977	Frame_Shift_Del	DEL	G	TCGA-05-4384-01A-01D-1753-08	1105145	133946977	7266454	162	5479											
DIP2C	22982	broad.mit.edu	37	chr10	436609	436609	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggattgaaaccgaggcggggTgacgtattcccgcacccgtc	14	12	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	436609	G	G	436609	1	3	5	0	1	0	0	0	0	0	0	0	4569	1711	59	5		5	DIP2C	10	436609	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08		436609	135098138	163	5480											
KIF5B	3799	broad.mit.edu	37	chr10	32307277	32307277	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagccaggtcctgaacaaaGagtttgcgcaggttgtgtaa	13	7	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32307277	C	C	32307277	2	2	5	1	0	0	0	0	0	0	0	1	8376	929	33	4		4	KIF5B	10	32307277	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	31870668	32307277	103227470	164	5481											
PARD3	56288	broad.mit.edu	37	chr10	34400444	34400444	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccccaggggagtagttctGctcccaagagtcctgggaga	13	11	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34400444	A	A	34400444	4	1	5	1	0	0	0	0	0	1	0	0	11537	1328	46	4	350	4	PARD3	10	34400444	Nonsense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	2093167	34400444	101134303	165	5482											
CCNY	219771	broad.mit.edu	37	chr10	35855135	35855135	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagatggtttaaaacagcgTtttgtggtgcagtgttgcca	12	5	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35855135	G	G	35855135	1	3	5	0	1	0	0	0	0	0	0	0	2966	1740	60	5		5	CCNY	10	35855135	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	1454691	35855135	99679612	166	5483											
PCDH15	65217	broad.mit.edu	37	chr10	55599954	55599954	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtatttcaggttctttgCttacacttcactttcagtaa	6	8	4	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55599954	A	A	55599954	1	1	5	0	1	0	0	0	0	0	0	0	11605	812	28	3		3	PCDH15	10	55599954	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	19744819	55599954	79934793	167	5484											
ANKRD1	27063	broad.mit.edu	37	chr10	92680840	92680840	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaatccctggagttgGccctgctgggcccctccaca	13	14	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92680840	C	C	92680840	1	2	5	0	1	0	0	0	0	0	0	0	637	1218	42	4		4	ANKRD1	10	92680840	5'UTR	SNP	G	TCGA-05-4384-01A-01D-1753-08	37080886	92680840	42853907	168	5485											
TNKS2	80351	broad.mit.edu	37	chr10	93621874	93621874	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaggcccagtgtaaatggcCtagcattagctgaatatgtt	11	7	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93621874	G	G	93621874	3	3	5	1	0	0	0	0	1	0	0	0	16444	680	24	4	3502	4	TNKS2	10	93621874	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	941034	93621874	41912873	169	5486											
TLL2	7093	broad.mit.edu	37	chr10	98129785	98129785	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caactcctgctgtgaatcatCacactctgccccggccccag	7	18	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98129785	T	T	98129785	1	4	5	0	1	0	0	0	0	0	0	0	16069	841	29	4		4	TLL2	10	98129785	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	4507911	98129785	37404962	170	5487											
PDCD11	22984	broad.mit.edu	37	chr10	105166430	105166430	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgaaaggcaacggaggAgttgttagtctgtctgttgg	16	4	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105166430	G	G	105166430	2	3	5	1	0	0	0	0	0	0	0	1	11711	291	11	5		5	PDCD11	10	105166430	Silent	SNP	A	TCGA-05-4384-01A-01D-1753-08	7036645	105166430	30368317	171	5488											
C10orf118	55088	broad.mit.edu	37	chr10	115917245	115917245	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggcatgagctgccacaaTcggctgccaggaatgtattt	11	10	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115917245	A	A	115917245	1	1	5	0	1	0	0	0	0	0	0	0	1598	1450	50	5		5	C10orf118	10	115917245	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	10750815	115917245	19617502	172	5489											
PDZD8	118987	broad.mit.edu	37	chr10	119044992	119044992	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattttcacacctggtttaaGattttaaaagggaaaacatg	8	5	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119044992	A	A	119044992	1	1	5	0	1	0	0	0	0	0	0	0	11799	957	33	4		4	PDZD8	10	119044992	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	3127747	119044992	16489755	173	5490											
DMBT1	1755	broad.mit.edu	37	chr10	124392870	124392870	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtccagtaagtgtgcgcCcagaagaatgccttggggcc	14	10	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124392870	A	A	124392870	1	1	5	0	1	0	0	0	0	0	0	0	4617	638	22	2		2	DMBT1	10	124392870	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	5347878	124392870	11141877	174	5491											
SCGB1C1	147199	broad.mit.edu	37	chr11	194334	194334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgccagacccccccccaCtgagggccttgcttgcctga	9	17	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194334	A	A	194334	1	1	5	0	1	0	0	0	0	0	0	0	14007	580	20	3		3	SCGB1C1	11	194334	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08		194334	134812182	175	5492											
IRF7	3665	broad.mit.edu	37	chr11	614252	614252	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggactggatctgccccccAtgacgctgtcagcagatggt	13	12	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	614252	G	G	614252	3	3	5	1	0	0	0	0	1	0	0	0	7905	217	8	5	934	5	IRF7	11	614252	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	419918	614252	134392264	176	5493											
MUC5B	727897	broad.mit.edu	37	chr11	1216417	1216417	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtctaccacggtcgggCccaccacagttgggtctacc	12	14	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1216417	T	T	1216417	1	4	5	0	1	0	0	0	0	0	0	0	10073	754	26	4		4	MUC5B	11	1216417	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	602165	1216417	133790099	177	5494											
TRPM5	29850	broad.mit.edu	37	chr11	2433606	2433606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccagggccgaggctacCagtgggactaggggtccact	15	11	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2433606	A	A	2433606	1	1	5	0	1	0	0	0	0	0	0	0	16714	609	21	2		2	TRPM5	11	2433606	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	1217189	2433606	132572910	178	5495											
ZNF195	7748	broad.mit.edu	37	chr11	3380496	3380496	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagttttttccacattcgTcacatttgtagggtttctct	6	8	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3380496	C	C	3380496	3	2	5	1	0	0	0	0	1	0	0	0	17884	1667	58	5	151	5	ZNF195	11	3380496	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	946890	3380496	131626020	179	5496											
OR52N2	390077	broad.mit.edu	37	chr11	5841596	5841596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacagctccagcctgaccCcaggattctttatcttgaat	6	13	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5841596	A	A	5841596	3	1	5	1	0	0	0	0	1	0	0	0	11222	623	22	2	33	2	OR52N2	11	5841596	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	2461100	5841596	129164920	180	5497											
C11orf17	56672	broad.mit.edu	37	chr11	8933196	8933196	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagccggcagccggccCgcagcgcgttctcccgggag	15	16	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8933196	G	G	8933196	3	3	5	1	0	0	0	0	1	0	0	0	1643	652	23	4	202	4	C11orf17	11	8933196	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	3091600	8933196	126073320	181	5498											
SYT13	57586	broad.mit.edu	37	chr11	45274336	45274336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtggagggggcagaagCacgccttgcttagggctgtg	17	8	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45274336	A	A	45274336	1	1	5	0	1	0	0	0	0	0	0	0	15588	725	25	3		3	SYT13	11	45274336	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	36341140	45274336	89732180	182	5499											
F2	2147	broad.mit.edu	37	chr11	46748375	46748375	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctcggatgcagagatcgGcatgtcaccttggtgtgtcc	15	10	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46748375	A	A	46748375	3	1	5	1	0	0	0	0	1	0	0	0	5385	1203	42	4	1152	4	F2	11	46748375	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	1474039	46748375	88258141	183	5500											
FOLH1	2346	broad.mit.edu	37	chr11	49196359	49196359	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttgtttgtttgttttgAttcactttgcactcccagag	8	7	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49196359	G	G	49196359	1	3	5	0	1	0	0	0	0	0	0	0	6037	348	12	5		5	FOLH1	11	49196359	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	2447984	49196359	85810157	184	5501											
OR10AG1	282770	broad.mit.edu	37	chr11	55735567	55735567	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactttgtggttcatcactaGaggatactgcaaaggcttac	10	8	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55735567	C	C	55735567	3	2	5	1	0	0	0	0	1	0	0	0	10991	933	33	4	535	4	OR10AG1	11	55735567	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	6539208	55735567	79270949	185	5502											
OR8H1	219469	broad.mit.edu	37	chr11	56057967	56057967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgatttcaatgtcgtatGtgtccatgcaggacagagct	10	8	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56057967	T	T	56057967	3	4	5	1	0	0	0	0	1	0	0	0	11331	1377	48	3	365	3	OR8H1	11	56057967	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	322400	56057967	78948549	186	5503											
OSBP	5007	broad.mit.edu	37	chr11	59376080	59376080	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagagaacgctgcagagcTgtgccatgcttagctatcaa	11	10	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59376080	A	A	59376080	2	1	5	1	0	0	0	0	0	0	0	1	11367	1567	55	5		5	OSBP	11	59376080	Silent	SNP	T	TCGA-05-4384-01A-01D-1753-08	3318113	59376080	75630436	187	5504											
MS4A15	219995	broad.mit.edu	37	chr11	60531432	60531432	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcccaaagttttggggGtaagaacagcctctctgcac	12	10	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60531432	T	T	60531432	5	4	5	1	0	0	0	0	0	0	1	0	9953	1275	44	3	228	3	MS4A15	11	60531432	Splice_Site	SNP	G	TCGA-05-4384-01A-01D-1753-08	1155352	60531432	74475084	188	5505											
FADS2	9415	broad.mit.edu	37	chr11	61624391	61624391	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggtgtgccctgagcagaTagaagggatggtggctgcag	18	6	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61624391	A	A	61624391	1	1	5	0	1	0	0	0	0	0	0	0	5412	1421	49	5		5	FADS2	11	61624391	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	1092959	61624391	73382125	189	5506											
SPTBN2	6712	broad.mit.edu	37	chr11	66476531	66476531	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcagaattaaagcccaCgagggtcacaaggactcttt	12	9	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66476531	T	T	66476531	1	4	5	0	1	0	0	0	0	0	0	0	15238	551	19	4		4	SPTBN2	11	66476531	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	4852140	66476531	68529985	190	5507											
PC	5091	broad.mit.edu	37	chr11	66637675	66637675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatccccagtccccagaagGggactcagggtccccttccc	9	19	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66637675	A	A	66637675	1	1	5	0	1	0	0	0	0	0	0	0	11591	1247	43	4		4	PC	11	66637675	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	161144	66637675	68368841	191	5508											
CLPB	81570	broad.mit.edu	37	chr11	72006575	72006575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacggctcatctccaaagCttcctgcctcagctgcagcg	9	15	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72006575	A	A	72006575	3	1	5	1	0	0	0	0	1	0	0	0	3583	797	28	3	606	3	CLPB	11	72006575	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	5368900	72006575	62999941	192	5509											
PLEKHB1	58473	broad.mit.edu	37	chr11	73372729	73372729	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatcctctaccatccaaGccctgtcccactttggccct	4	21	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73372729	T	T	73372729	1	4	5	0	1	0	0	0	0	0	0	0	12159	986	34	3		3	PLEKHB1	11	73372729	3'UTR	SNP	G	TCGA-05-4384-01A-01D-1753-08	1366154	73372729	61633787	193	5510											
P4HA3	283208	broad.mit.edu	37	chr11	73997455	73997455	+	Intron	DEL	G	-	-													gcctggaagaaatcagagcaGggaatataaaatagggatta							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73997455	-	-	73997455	6	5	5	0	1	1	0	1	0	0	0	0	11452	1015	35	0		0	P4HA3	11	73997455	Intron	DEL	G	TCGA-05-4384-01A-01D-1753-08	624726	73997455	61009061	194	5511											
FAT3	120114	broad.mit.edu	37	chr11	92531077	92531077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaaccagacatgacgaCgatgggtcagtttgtcctat	10	9	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531077	A	A	92531077	3	1	5	1	0	0	0	0	1	0	0	0	5748	536	19	3	4932	3	FAT3	11	92531077	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	18533622	92531077	42475439	195	5512											
KDM4D	55693	broad.mit.edu	37	chr11	94731100	94731100	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttggcatgtggaaaaccacGtttgcttggcatacagagga	12	7	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94731100	C	C	94731100	2	2	5	1	0	0	0	0	0	0	0	1	8201	1132	40	4		4	KDM4D	11	94731100	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	2200023	94731100	40275416	196	5513											
MMP12	4321	broad.mit.edu	37	chr11	102743653	102743653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcatttccctgaaatgatGgacatcggggactccacatc	10	11	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102743653	T	T	102743653	3	4	5	1	0	0	0	0	1	0	0	0	9744	1348	47	2	1155	2	MMP12	11	102743653	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	8012553	102743653	32262863	197	5514											
PDGFD	80310	broad.mit.edu	37	chr11	103780477	103780477	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgttcatggtgatccaacTggatgtcaactagagccatg	10	9	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103780477	C	C	103780477	3	2	5	1	0	0	0	0	1	0	0	0	11754	1580	55	5	58	5	PDGFD	11	103780477	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	1036824	103780477	31226039	198	5515											
IFT46	56912	broad.mit.edu	37	chr11	118422914	118422914	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttactgttgcaaagaaTgtggtatttcttacctggtg	11	5	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118422914	C	C	118422914	1	2	5	0	1	0	0	0	0	0	0	0	7630	1479	51	5		5	IFT46	11	118422914	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	14642437	118422914	16583602	199	5516											
FGF23	8074	broad.mit.edu	37	chr12	4479687	4479687	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatccgggcccggggcttcAgcacgttcagggggtcccgc	15	15	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4479687	T	T	4479687	3	4	5	1	0	0	0	0	1	0	0	0	5909	188	7	5	181	5	FGF23	12	4479687	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08		4479687	129372208	200	5517											
KCNA1	3736	broad.mit.edu	37	chr12	5021401	5021401	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagggcgagcaggccaCctccctggccatcctcaggg	13	16	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021401	T	T	5021401	3	4	5	1	0	0	0	0	1	0	0	0	8071	507	18	4	859	4	KCNA1	12	5021401	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	541714	5021401	128830494	201	5518											
NCAPD2	9918	broad.mit.edu	37	chr12	6638877	6638877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggactggggaggctgatGgggaaggttgagcctttact	18	6	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6638877	T	T	6638877	1	4	5	0	1	0	0	0	0	0	0	0	10300	1363	47	2		2	NCAPD2	12	6638877	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	1617476	6638877	127213018	202	5519											
SLCO1B3	28234	broad.mit.edu	37	chr12	21069235	21069235	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgttcctggtctttcactGacaattccaacattctttac	6	11	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21069235	T	T	21069235	1	4	5	0	1	0	0	0	0	0	0	0	14838	1305	45	3		3	SLCO1B3	12	21069235	3'UTR	SNP	G	TCGA-05-4384-01A-01D-1753-08	14430358	21069235	112782660	203	5520											
PUS7L	83448	broad.mit.edu	37	chr12	44148626	44148626	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttctctcttacatcacaGgcaaaattattcagtaactc	3	12	4	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44148626	A	A	44148626	2	1	5	1	0	0	0	0	0	0	0	1	12942	987	35	4		4	PUS7L	12	44148626	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	23079391	44148626	89703269	204	5521											
KCNH3	23416	broad.mit.edu	37	chr12	49934649	49934649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcctcctgccccttcacCccacgcctcctctgagaagt	7	19	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49934649	A	A	49934649	1	1	5	0	1	0	0	0	0	0	0	0	8103	638	22	2		2	KCNH3	12	49934649	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	5786023	49934649	83917246	205	5522											
DIP2B	57609	broad.mit.edu	37	chr12	51086653	51086653	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaacatcaaatcagttgTttataagaggcaagtgacat	7	6	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51086653	C	C	51086653	1	2	5	0	1	0	0	0	0	0	0	0	4568	1740	60	5		5	DIP2B	12	51086653	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	1152004	51086653	82765242	206	5523											
ERBB3	2065	broad.mit.edu	37	chr12	56488356	56488356	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggggtcagtgatgggataAtaaggagagggggtcaggtg	20	3	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56488356	C	C	56488356	1	2	5	0	1	0	0	0	0	0	0	0	5250	116	4	5		5	ERBB3	12	56488356	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	5401703	56488356	77363539	207	5524											
BAZ2A	11176	broad.mit.edu	37	chr12	57003980	57003980	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctcggcggacactgtgtAccacgttgcggctcaggtac	13	13	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57003980	T	T	57003980	3	4	5	1	0	0	0	0	1	0	0	0	1336	391	14	5	3996	5	BAZ2A	12	57003980	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	515624	57003980	76847915	208	5525											
KIF5A	3798	broad.mit.edu	37	chr12	57974844	57974844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagggtgcactgaaggagGccaaggagggcgccatgaag	19	7	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57974844	A	A	57974844	3	1	5	1	0	0	0	0	1	0	0	0	8375	1203	42	4	2738	4	KIF5A	12	57974844	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	970864	57974844	75877051	209	5526											
C12orf56	115749	broad.mit.edu	37	chr12	64746630	64746630	+	Intron	DEL	T	-	-													taagaaatatatatatatacTtttttttttgccttagatcc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64746630	-	-	64746630	6	5	5	0	1	1	0	1	0	0	0	0	1713	1624	56	0		0	C12orf56	12	64746630	Intron	DEL	T	TCGA-05-4384-01A-01D-1753-08	6771786	64746630	69105265	210	5527											
NAV3	89795	broad.mit.edu	37	chr12	78570239	78570239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaactctagaggaagtgaGgtgaatataaaccgtggaca	13	5	1	4			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78570239	T	T	78570239	3	4	5	1	0	0	0	0	1	0	0	0	10279	1014	35	2	5226	2	NAV3	12	78570239	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	13823609	78570239	55281656	211	5528											
SYT1	6857	broad.mit.edu	37	chr12	79689917	79689917	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcacatctgatccttaCgtgaaagtgtttctgctacc	11	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79689917	A	A	79689917	4	1	5	1	0	0	0	0	0	1	0	0	15584	547	19	3	557	3	SYT1	12	79689917	Nonsense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	1119678	79689917	54161978	212	5529											
EEA1	8411	broad.mit.edu	37	chr12	93253031	93253031	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcttcccatgggaagtgCccaaaaagcttaaatattga	8	9	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93253031	T	T	93253031	1	4	5	0	1	0	0	0	0	0	0	0	4961	754	26	4		4	EEA1	12	93253031	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	13563114	93253031	40598864	213	5530											
TCP11L2	255394	broad.mit.edu	37	chr12	106708350	106708350	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgtgtgTgtgtgagagagagagagaga	20	0	0	4			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106708350	A	A	106708350	1	1	5	0	1	0	0	0	0	0	0	0	15837	1711	59	5		5	TCP11L2	12	106708350	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	13455319	106708350	27143545	214	5531											
TCP11L2	255394	broad.mit.edu	37	chr12	106708377	106708377	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagagagagagagagagagaGagacagagagagagatagac	18	2	0	10			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106708377	C	C	106708377	1	2	5	0	1	0	0	0	0	0	0	0	15837	957	33	4		4	TCP11L2	12	106708377	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	27	106708377	27143518	215	5532											
RBM19	9904	broad.mit.edu	37	chr12	114362369	114362369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtctgaggctgaccatgCttcagaaaaaagagaacctt	10	8	2	5			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114362369	A	A	114362369	1	1	5	0	1	0	0	0	0	0	0	0	13229	812	28	3		3	RBM19	12	114362369	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	7653992	114362369	19489526	216	5533											
NOS1	4842	broad.mit.edu	37	chr12	117726019	117726019	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgtactcagtgcatccCgtttcctggaagatcaagag	10	10	2	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117726019	A	A	117726019	2	1	5	1	0	0	0	0	0	0	0	1	10636	639	23	1		1	NOS1	12	117726019	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	3363650	117726019	16125876	217	5534											
PIWIL1	9271	broad.mit.edu	37	chr12	130851855	130851855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctccttggtggtggtttcTttagcatggcccctatgctt	10	10	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130851855	A	A	130851855	1	1	5	0	1	0	0	0	0	0	0	0	12052	1624	56	5		5	PIWIL1	12	130851855	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	13125836	130851855	3000040	218	5535											
PARP4	143	broad.mit.edu	37	chr13	25067944	25067944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaacttacatgggccaaCgaacagaggtgtgaggagaa	13	6	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25067944	A	A	25067944	1	1	5	0	1	0	0	0	0	0	0	0	11557	551	19	3		3	PARP4	13	25067944	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08		25067944	90101934	219	5536											
KBTBD7	84078	broad.mit.edu	37	chr13	41766583	41766583	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccagagtcaaactgcaaaAggcctaacatggtacctata	8	10	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41766583	G	G	41766583	3	3	5	1	0	0	0	0	1	0	0	0	8068	72	3	5	247	5	KBTBD7	13	41766583	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	16698639	41766583	73403295	220	5537											
DGKH	160851	broad.mit.edu	37	chr13	42729599	42729599	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaccaaagggctagagctCtaccgtgcaaacataagtat	8	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42729599	G	G	42729599	1	3	5	0	1	0	0	0	0	0	0	0	4510	928	32	4		4	DGKH	13	42729599	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	963016	42729599	72440279	221	5538											
DGKH	160851	broad.mit.edu	37	chr13	42729680	42729680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcttatcttaaagcaaaGtgctttggttttaaaaatga	6	4	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42729680	T	T	42729680	1	4	5	0	1	0	0	0	0	0	0	0	4510	1044	36	3		3	DGKH	13	42729680	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	81	42729680	72440198	222	5539											
PCDH8	5100	broad.mit.edu	37	chr13	53418865	53418865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttctcatagacgctctGcagccccactgtcttgggca	8	14	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53418865	T	T	53418865	3	4	5	1	0	0	0	0	1	0	0	0	11611	1328	46	3	173	3	PCDH8	13	53418865	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	10689185	53418865	61751013	223	5540											
DIAPH3	81624	broad.mit.edu	37	chr13	60554834	60554834	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacacctgaagcagataaaGaagaaagaacgaataacaag	8	7	0	5			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60554834	C	C	60554834	1	2	5	0	1	0	0	0	0	0	0	0	4560	957	33	4		4	DIAPH3	13	60554834	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	7135969	60554834	54615044	224	5541											
DACH1	1602	broad.mit.edu	37	chr13	72278737	72278737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactttatgagaacccatGgcagggagcctgagctgctg	12	11	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72278737	T	T	72278737	1	4	5	0	1	0	0	0	0	0	0	0	4253	1363	47	2		2	DACH1	13	72278737	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	11723903	72278737	42891141	225	5542											
SLITRK1	114798	broad.mit.edu	37	chr13	84454982	84454982	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccattctttcagggagaGcagatcacaggtgcagtccc	11	12	3	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84454982	C	C	84454982	3	2	5	1	0	0	0	0	1	0	0	0	14856	971	34	4	1433	4	SLITRK1	13	84454982	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	12176245	84454982	30714896	226	5543											
CDH24	64403	broad.mit.edu	37	chr14	23517504	23517504	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgtctcggcgcgcgggaggGccgggcgccgggggggccgc	23	14	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23517504	C	C	23517504	2	2	5	1	0	0	0	0	0	0	0	1	3139	1190	42	4		4	CDH24	14	23517504	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08		23517504	83832036	227	5544											
DHRS2	10202	broad.mit.edu	37	chr14	24114489	24114489	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggggcggctgcgtagctgTggtcccaggcccaggagcct	18	12	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24114489	A	A	24114489	3	1	5	1	0	0	0	0	1	0	0	0	4530	1696	59	5	911	5	DHRS2	14	24114489	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	596985	24114489	83235051	228	5545											
GZMH	2999	broad.mit.edu	37	chr14	25075882	25075882	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagactcctggaggtgtcCcttttttgtttccataggag	11	8	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25075882	T	T	25075882	3	4	5	1	0	0	0	0	1	0	0	0	6982	623	22	4	76	4	GZMH	14	25075882	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	961393	25075882	82273658	229	5546											
PRKD1	5587	broad.mit.edu	37	chr14	30066795	30066795	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcattaaatgggaatgtgCcgcttaggcttacatagatg	10	7	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30066795	T	T	30066795	3	4	5	1	0	0	0	0	1	0	0	0	12624	739	26	4	414	4	PRKD1	14	30066795	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	4990913	30066795	77282745	230	5547											
SLC25A21	89874	broad.mit.edu	37	chr14	37198701	37198701	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatttaagtataataaataCtctcacttaccaatgctggt	4	8	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37198701	T	T	37198701	1	4	5	0	1	0	0	0	0	0	0	0	14598	580	20	4		4	SLC25A21	14	37198701	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	7131906	37198701	70150839	231	5548											
WDR89	112840	broad.mit.edu	37	chr14	64066555	64066555	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagttttcctttcctgcttGgacagtctttgatgtgtcta	8	9	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64066555	A	A	64066555	4	1	5	1	0	0	0	0	0	1	0	0	17463	1357	47	4	1061	4	WDR89	14	64066555	Nonsense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	26867854	64066555	43282985	232	5549											
GPHN	10243	broad.mit.edu	37	chr14	66975144	66975144	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctcgcgcttctctggctCcctagctgtcgcgctctcct	8	19	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66975144	T	T	66975144	1	4	5	0	1	0	0	0	0	0	0	0	6675	870	30	4		4	GPHN	14	66975144	5'UTR	SNP	C	TCGA-05-4384-01A-01D-1753-08	2908589	66975144	40374396	233	5550											
DCAF5	8816	broad.mit.edu	37	chr14	69520532	69520532	+	3'UTR	DEL	G	-	-													taaacaatttttttttttttGtaaggctacttttgtagctt							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69520532	-	-	69520532	6	5	5	0	1	1	0	1	0	0	0	0	4306	1392	48	0		0	DCAF5	14	69520532	3'UTR	DEL	G	TCGA-05-4384-01A-01D-1753-08	2545388	69520532	37829008	234	5551											
TTLL5	23093	broad.mit.edu	37	chr14	76231102	76231102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagattgagggcaatgagGccaaaatacccaggtacctg	12	9	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76231102	T	T	76231102	3	4	5	1	0	0	0	0	1	0	0	0	16856	1194	42	3	1765	3	TTLL5	14	76231102	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	6710570	76231102	31118438	235	5552											
ISM2	145501	broad.mit.edu	37	chr14	77944899	77944899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagccactcctatgcagGggtaggggctcatctcacca	10	15	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77944899	T	T	77944899	1	4	5	0	1	0	0	0	0	0	0	0	7931	1247	43	2		2	ISM2	14	77944899	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	1713797	77944899	29404641	236	5553											
NRXN3	9369	broad.mit.edu	37	chr14	80130126	80130126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctttattataggaacaGgggaaaattggagttgtctt	11	3	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80130126	T	T	80130126	3	4	5	1	0	0	0	0	1	0	0	0	10762	991	35	2	2628	2	NRXN3	14	80130126	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	2185227	80130126	27219414	237	5554											
OR4N4	283694	broad.mit.edu	37	chr15	22332776	22332776	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacagttatggcctatgacaGgtatgttgccatctgtaacc	10	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22332776	C	C	22332776	1	2	5	0	1	0	0	0	0	0	0	0	11172	1015	35	4		4	OR4N4	15	22332776	5'UTR	SNP	G	TCGA-05-4384-01A-01D-1753-08		22332776	80198616	238	5555											
APBA2	321	broad.mit.edu	37	chr15	29390729	29390729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagacgctgacggaagtgGacctcttcatttccacccag	9	15	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29390729	T	T	29390729	3	4	5	1	0	0	0	0	1	0	0	0	759	1174	41	3	1310	3	APBA2	15	29390729	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	7057953	29390729	73140663	239	5556											
RYR3	6263	broad.mit.edu	37	chr15	33603318	33603318	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtctccgcggcgggggCgaggccgtgggcaggtgggg	24	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33603318	T	T	33603318	1	4	5	0	1	0	0	0	0	0	0	0	13881	783	27	4		4	RYR3	15	33603318	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	4212589	33603318	68928074	240	5557											
RYR3	6263	broad.mit.edu	37	chr15	33962735	33962735	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagagaaggagcagccgacGgaggaggaggagagatgccc	18	9	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33962735	A	A	33962735	2	1	5	1	0	0	0	0	0	0	0	1	13881	1103	39	4		4	RYR3	15	33962735	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	359417	33962735	68568657	241	5558											
MAPKBP1	23005	broad.mit.edu	37	chr15	42103010	42103010	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgggtgactggaagtcCtgggtggcctggagggctcc	18	11	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42103010	T	T	42103010	1	4	5	0	1	0	0	0	0	0	0	0	9384	696	24	4		4	MAPKBP1	15	42103010	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	8140275	42103010	60428382	242	5559											
EPB42	2038	broad.mit.edu	37	chr15	43512848	43512848	+	Intron	DEL	C	-	-													accagcacccacctaccacaCcccccccccacagccacctc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43512848	-	-	43512848	6	5	5	0	1	1	0	1	0	0	0	0	5200	522	18	0		0	EPB42	15	43512848	Intron	DEL	C	TCGA-05-4384-01A-01D-1753-08	1409838	43512848	59018544	243	5560											
SERINC4	619189	broad.mit.edu	37	chr15	44087738	44087738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcagccccacccctttgCcctggagagaggaaatggct	11	15	0	1	rs74494149		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44087738	T	T	44087738	2	4	5	1	0	0	0	0	0	0	0	1	14195	753	26	4		4	SERINC4	15	44087738	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	574890	44087738	58443654	244	5561											
MYO5A	4644	broad.mit.edu	37	chr15	52606127	52606127	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctactaaaatttctaccctCaaattctcaactaatgaaga	2	10	4	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52606127	G	G	52606127	1	3	5	0	1	0	0	0	0	0	0	0	10172	841	29	4		4	MYO5A	15	52606127	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	8518389	52606127	49925265	245	5562											
PIGB	9488	broad.mit.edu	37	chr15	55611455	55611455	+	Silent	SNP	A	C	C													ggtggcggccagggatgaggAggcccctaagcaagtgcgga							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55611455	C	C	55611455	2	2	5	1	0	0	0	0	0	0	0	1	11980	295	11	5		5	PIGB	15	55611455	Silent	SNP	A	TCGA-05-4384-01A-01D-1753-08	3005328	55611455	46919937	246	5563	19	2									
PIGB	9488	broad.mit.edu	37	chr15	55611459	55611459	+	Missense_Mutation	SNP	C	A	A													gcggccagggatgaggaggcCcctaagcaagtgcggaatgg							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55611459	A	A	55611459	3	1	5	1	0	0	0	0	1	0	0	0	11980	623	22	2	13	2	PIGB	15	55611459	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	4	55611459	46919933	247	5564	19	2									
CILP	8483	broad.mit.edu	37	chr15	65497554	65497554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatcagtctcaaactgacCctctaactccctcctcattc	2	18	4	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65497554	A	A	65497554	1	1	5	0	1	0	0	0	0	0	0	0	3460	638	22	2		2	CILP	15	65497554	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	9886095	65497554	37033838	248	5565											
THSD4	79875	broad.mit.edu	37	chr15	71457100	71457100	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaaaaaaaaactgcgctAgaaccaacttattcatcatc	4	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71457100	G	G	71457100	1	3	5	0	1	0	0	0	0	0	0	0	16001	435	15	5		5	THSD4	15	71457100	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	5959546	71457100	31074292	249	5566											
TMEM202	338949	broad.mit.edu	37	chr15	72698971	72698971	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatattccagggccttcttTctcatctctgtctttaccat	4	13	4	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72698971	C	C	72698971	2	2	5	1	0	0	0	0	0	0	0	1	16250	1780	62	5		5	TMEM202	15	72698971	Silent	SNP	T	TCGA-05-4384-01A-01D-1753-08	1241871	72698971	29832421	250	5567											
HCN4	10021	broad.mit.edu	37	chr15	73617828	73617828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagctccaccccaccagggGgcgtcagcagccagccccac	10	20	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73617828	T	T	73617828	1	4	5	0	1	0	0	0	0	0	0	0	7065	1247	43	2		2	HCN4	15	73617828	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	918857	73617828	28913564	251	5568											
FBXO22	26263	broad.mit.edu	37	chr15	76222283	76222283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggttataattgctgtaaGgtgggagccagtaattatct	11	4	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76222283	T	T	76222283	3	4	5	1	0	0	0	0	1	0	0	0	5791	991	35	2	709	2	FBXO22	15	76222283	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	2604455	76222283	26309109	252	5569											
AKAP13	11214	broad.mit.edu	37	chr15	86266516	86266516	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcttgtacgtgatgggaGtgtgtttctgaagaatgcag	15	4	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86266516	A	A	86266516	3	1	5	1	0	0	0	0	1	0	0	0	449	1029	36	4	6878	4	AKAP13	15	86266516	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	10044233	86266516	16264876	253	5570											
ACAN	176	broad.mit.edu	37	chr15	89382102	89382102	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggccactgaagggcgCgtgcgggtcaacagtgccta	16	11	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89382102	A	A	89382102	2	1	5	1	0	0	0	0	0	0	0	1	117	755	27	3		3	ACAN	15	89382102	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	3115586	89382102	13149290	254	5571											
TM2D3	80213	broad.mit.edu	37	chr15	102191956	102191956	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccggatcctttattgactGagccagcgcctgcgattgct	11	13	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102191956	A	A	102191956	4	1	5	1	0	0	0	0	0	1	0	0	16088	1299	45	4	651	4	TM2D3	15	102191956	Nonsense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	12809854	102191956	339436	255	5572											
SNRNP25	79622	broad.mit.edu	37	chr16	104099	104100	+	Intron	INS	-	G	G													gggcgcgggagtcgttccccINSggggtccgggcatccgggcg					rs150776529	by1000genomes	TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104100	G	G	104099	6	5	5	0	1	1	1	0	0	0	0	0	14967	667	23	0		0	SNRNP25	16	104099	Intron	INS	-	TCGA-05-4384-01A-01D-1753-08		104099	90250654	256	5573											
MMP25	64386	broad.mit.edu	37	chr16	3107615	3107615	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaactttcttcttcaaagGtgagtcatttcacttggcct	8	9	5	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3107615	A	A	3107615	5	1	5	1	0	0	0	0	0	0	1	0	9756	1275	44	4	1033	4	MMP25	16	3107615	Splice_Site	SNP	G	TCGA-05-4384-01A-01D-1753-08	3003516	3107615	87247138	257	5574											
A2BP1	54715	broad.mit.edu	37	chr16	7680728	7680728	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttgttttgtgacataaatCtgagtccaatcaccttccct	5	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7680728	A	A	7680728	1	1	5	0	1	0	0	0	0	0	0	0	3	928	32	3		3	A2BP1	16	7680728	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	4573113	7680728	82674025	258	5575											
XYLT1	64131	broad.mit.edu	37	chr16	17211541	17211541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcgagaaggtcagaggcGcaacgaggaatttggtctct	14	7	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17211541	T	T	17211541	3	4	5	1	0	0	0	0	1	0	0	0	17590	1087	38	3	368	3	XYLT1	16	17211541	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	9530813	17211541	73143212	259	5576											
TMC5	79838	broad.mit.edu	37	chr16	19451966	19451967	+	Nonsense_Mutation	DNP	GG	TT	TT													aatccatacgcagactctctGggaaagcctgattatccagg							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	19451967	TT	TT	19451966	4	4	5	1	0	0	0	0	0	1	0	0	16111	1335	47	2	608	2	TMC5	16	19451966	Nonsense_Mutation	DNP	GG	TCGA-05-4384-01A-01D-1753-08	2240425	19451966	70902787	260	5577											
BOLA2	552900	broad.mit.edu	37	chr16	29571557	29571557	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaaagaaaacacatttAtaaaaacttcaaattcctat	1	7	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29571557	T	T	29571557	1	4	5	0	1	0	0	0	0	0	0	0	1492	464	16	5		5	BOLA2	16	29571557	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	10119591	29571557	60783196	261	5578											
FUS	2521	broad.mit.edu	37	chr16	31199641	31199641	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctttttttccatgtcacTaaaggccctcgggaccaagg	9	11	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31199641	G	G	31199641	1	3	5	0	1	0	0	0	0	0	0	0	6160	1537	53	5		5	FUS	16	31199641	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	1628084	31199641	59155112	262	5579											
ITGAX	3687	broad.mit.edu	37	chr16	31382711	31382711	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttcatacctgccgagatccCcaggtctgcgtttgagtgtc	11	12	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31382711	G	G	31382711	3	3	5	1	0	0	0	0	1	0	0	0	7959	623	22	4	1960	4	ITGAX	16	31382711	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	183070	31382711	58972042	263	5580											
CNGB1	1258	broad.mit.edu	37	chr16	57996564	57996564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagcgggagacctgccCcagccccctgggcagcctgg	14	17	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57996564	T	T	57996564	1	4	5	0	1	0	0	0	0	0	0	0	3632	638	22	4		4	CNGB1	16	57996564	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	26613853	57996564	32358189	264	5581											
SLC38A7	55238	broad.mit.edu	37	chr16	58710188	58710188	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaccttgcaactggcactGgcacctgaaatccgaagcag	12	12	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58710188	A	A	58710188	1	1	5	0	1	0	0	0	0	0	0	0	14723	1363	47	4		4	SLC38A7	16	58710188	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	713624	58710188	31644565	265	5582											
CDH8	1006	broad.mit.edu	37	chr16	61687897	61687897	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctctgtgtcctcctcccctCctccttcatcatcgtagcga	5	19	3	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61687897	T	T	61687897	3	4	5	1	0	0	0	0	1	0	0	0	3146	855	30	4	388	4	CDH8	16	61687897	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	2977709	61687897	28666856	266	5583											
FUK	197258	broad.mit.edu	37	chr16	70497537	70497537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccctagaactggaagtgCggcagaagcgggagcagatc	15	9	0	4			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70497537	T	T	70497537	3	4	5	1	0	0	0	0	1	0	0	0	6156	759	27	4	100	4	FUK	16	70497537	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	8809640	70497537	19857216	267	5584											
SPG7	6687	broad.mit.edu	37	chr16	89603223	89603223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccatgaggaagctcagaGgaaagacccccgcctgctcc	12	14	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89603223	T	T	89603223	1	4	5	0	1	0	0	0	0	0	0	0	15162	1001	35	2		2	SPG7	16	89603223	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	19105686	89603223	751530	268	5585											
TAX1BP3	30851	broad.mit.edu	37	chr17	3568740	3568740	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatgctgttggcattgttgTaaacaaacaagttaagggca	11	6	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3568740	A	A	3568740	1	1	5	0	1	0	0	0	0	0	0	0	15714	1653	57	5		5	TAX1BP3	17	3568740	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08		3568740	77626470	269	5586											
TP53	7157	broad.mit.edu	37	chr17	7578235	7578235	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtgtttctgtcatccaaaTactccacacgcaaatttcct	4	12	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578235	C	C	7578235	3	2	5	1	0	0	0	0	1	0	0	0	16505	1406	49	5	680	5	TP53	17	7578235	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	4009495	7578235	73616975	270	5587											
VAMP2	6844	broad.mit.edu	37	chr17	8064056	8064057	+	3'UTR	DEL	AC	-	-													acagggggacacacacacggAcacacacacacacggatcca							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8064057	-	-	8064056	6	5	5	0	1	1	0	1	0	0	0	0	17240	290	10	0		0	VAMP2	17	8064056	3'UTR	DEL	AC	TCGA-05-4384-01A-01D-1753-08	485821	8064056	73131154	271	5588											
MYH8	4626	broad.mit.edu	37	chr17	10303575	10303575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagcattttaaaaaatacCatagaatgggatatatttgg	7	5	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10303575	A	A	10303575	1	1	5	0	1	0	0	0	0	0	0	0	10135	609	21	2		2	MYH8	17	10303575	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	2239519	10303575	70891635	272	5589											
CYTSB	92521	broad.mit.edu	37	chr17	20134957	20134957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatttagagtagaatggatGgatttggatgcctgttgtgg	15	3	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20134957	T	T	20134957	1	4	5	0	1	0	0	0	0	0	0	0	4243	1363	47	2		2	CYTSB	17	20134957	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	9831382	20134957	61060253	273	5590											
LRRC37B	114659	broad.mit.edu	37	chr17	30349931	30349931	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgggccttctttatcTccccaagccatactgacaag	6	15	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30349931	C	C	30349931	1	2	5	0	1	0	0	0	0	0	0	0	9081	1566	54	5		5	LRRC37B	17	30349931	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	10214974	30349931	50845279	274	5591											
ERBB2	2064	broad.mit.edu	37	chr17	37876038	37876038	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgagactgtttctcctgcAgctgtgtggacctggatgac	13	9	1	2	rs112734930		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37876038	T	T	37876038	5	4	5	1	0	0	0	0	0	0	1	0	5248	202	7	5	1959	5	ERBB2	17	37876038	Splice_Site	SNP	A	TCGA-05-4384-01A-01D-1753-08	7526107	37876038	43319172	275	5592											
IKZF3	22806	broad.mit.edu	37	chr17	37944531	37944531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtcccctgggtcagtgCtctgaagaaatgtacggcag	13	10	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37944531	A	A	37944531	3	1	5	1	0	0	0	0	1	0	0	0	7686	797	28	3	852	3	IKZF3	17	37944531	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	68493	37944531	43250679	276	5593											
KRT40	125115	broad.mit.edu	37	chr17	39140015	39140015	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtaaaacagccccttcTagtagaaagataaagcaaac	6	9	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39140015	A	A	39140015	1	1	5	0	1	0	0	0	0	0	0	0	8549	1537	53	5		5	KRT40	17	39140015	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	1195484	39140015	42055195	277	5594											
KLHL11	55175	broad.mit.edu	37	chr17	40010662	40010662	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcgaagaatctttggtgccGattccaagttgtgccattta	9	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40010662	A	A	40010662	3	1	5	1	0	0	0	0	1	0	0	0	8438	1059	37	4	673	4	KLHL11	17	40010662	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	870647	40010662	41184548	278	5595											
NMT1	4836	broad.mit.edu	37	chr17	43175845	43175846	+	Missense_Mutation	DNP	GG	TT	TT													gatccgagagatcaccaggcGggttcacctggagggcatct							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43175846	TT	TT	43175845	3	4	5	1	0	0	0	0	1	0	0	0	10598	1116	39	1	835	1	NMT1	17	43175845	Missense_Mutation	DNP	GG	TCGA-05-4384-01A-01D-1753-08	3165183	43175845	38019365	279	5596											
SFRS1	6426	broad.mit.edu	37	chr17	56083844	56083844	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacccgcagacggtacccaTcgtaatcatagccgtcgcga	9	16	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56083844	C	C	56083844	3	2	5	1	0	0	0	0	1	0	0	0	14278	1435	50	5	573	5	SFRS1	17	56083844	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	12907999	56083844	25111366	280	5597											
SAP30BP	29115	broad.mit.edu	37	chr17	73702103	73702103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagattgagtttgtgacgGgcaccaaaaaaggcaccacg	11	10	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73702103	T	T	73702103	3	4	5	1	0	0	0	0	1	0	0	0	13946	1232	43	2	714	2	SAP30BP	17	73702103	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	17618259	73702103	7493107	281	5598											
RNF213	57674	broad.mit.edu	37	chr17	78324034	78324034	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttatgtttcccatcacttTggggaattttcttttccatt	5	9	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78324034	C	C	78324034	1	2	5	0	1	0	0	0	0	0	0	0	13588	1827	63	5		5	RNF213	17	78324034	Intron	SNP	T	TCGA-05-4384-01A-01D-1753-08	4621931	78324034	2871176	282	5599											
TXNDC2	84203	broad.mit.edu	37	chr18	9886910	9886910	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaagccatccagcccaAagagagtaacatccccaagt	7	12	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9886910	T	T	9886910	3	4	5	1	0	0	0	0	1	0	0	0	16923	14	1	5	440	5	TXNDC2	18	9886910	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08		9886910	68190338	283	5600											
DSC2	1824	broad.mit.edu	37	chr18	28650692	28650692	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaagccagactacttacCactttgtcatctccaggagc	6	12	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28650692	A	A	28650692	2	1	5	1	0	0	0	0	0	0	0	1	4806	608	21	2		2	DSC2	18	28650692	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	18763782	28650692	49426556	284	5601											
CELF4	56853	broad.mit.edu	37	chr18	34853003	34853003	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttggggtcataggtgcggCcgccaggccattcatgttga	16	9	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34853003	G	G	34853003	3	3	5	1	0	0	0	0	1	0	0	0	3248	739	26	4	559	4	CELF4	18	34853003	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	6202311	34853003	43224245	285	5602											
GALR1	2587	broad.mit.edu	37	chr18	74980579	74980579	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtggttgtggtgtttggAatctcctggctgccgcacca	15	9	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74980579	G	G	74980579	2	3	5	1	0	0	0	0	0	0	0	1	6289	233	9	5		5	GALR1	18	74980579	Silent	SNP	A	TCGA-05-4384-01A-01D-1753-08	40127576	74980579	3096669	286	5603											
GALR1	2587	broad.mit.edu	37	chr18	74980858	74980858	+	Nonstop_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaattgtactcatgtgtgAtaaaagatagagtatcctta	7	6	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74980858	C	C	74980858	4	2	5	1	0	0	0	0	0	0	0	0	6289	346	12	5	1060	5	GALR1	18	74980858	Nonstop_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	279	74980858	3096390	287	5604											
ATP9B	374868	broad.mit.edu	37	chr18	77108009	77108009	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagggtccgggagtgggGgtgctgagtgctgccggaag	23	7	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77108009	A	A	77108009	1	1	5	0	1	0	0	0	0	0	0	0	1203	1247	43	4		4	ATP9B	18	77108009	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	2127151	77108009	969239	288	5605											
DOT1L	84444	broad.mit.edu	37	chr19	2213544	2213544	+	Frame_Shift_Del	DEL	A	-	-													tgtttgtcctacaggagaagAacgcccagctcctgggtgcg							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2213544	-	-	2213544	7	5	5	1	0	1	0	1	0	0	0	0	4749	246	9	0	1630	0	DOT1L	19	2213544	Frame_Shift_Del	DEL	A	TCGA-05-4384-01A-01D-1753-08		2213544	56915439	289	5606											
XAB2	56949	broad.mit.edu	37	chr19	7687539	7687539	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccggcgggcaggcagcgcCgtggccttctgcaggggcag	19	14	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7687539	A	A	7687539	2	1	5	1	0	0	0	0	0	0	0	1	17545	639	23	1		1	XAB2	19	7687539	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	5473995	7687539	51441444	290	5607											
KEAP1	9817	broad.mit.edu	37	chr19	10600006	10600006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcctgaccatcatagcCcccagcagcatagatacagt	8	14	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10600006	A	A	10600006	3	1	5	1	0	0	0	0	1	0	0	0	8211	623	22	2	312	2	KEAP1	19	10600006	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	2912467	10600006	48528977	291	5608											
CD22	933	broad.mit.edu	37	chr19	35829190	35829190	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaattacacgtggtaccacAatgggaaagaaatgcaggga	11	7	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35829190	C	C	35829190	3	2	5	1	0	0	0	0	1	0	0	0	3015	130	5	5	1123	5	CD22	19	35829190	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	25229184	35829190	23299793	292	5609											
NPHS1	4868	broad.mit.edu	37	chr19	36339102	36339102	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggaagaatgactttttctCtgtgctgggtcctgaggctt	12	7	1	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36339102	T	T	36339102	1	4	5	0	1	0	0	0	0	0	0	0	10677	928	32	4		4	NPHS1	19	36339102	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	509912	36339102	22789881	293	5610											
RASGRP4	115727	broad.mit.edu	37	chr19	38901508	38901508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtatccacttgggggtaGgggcggtttctcctcaccgt	13	12	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38901508	T	T	38901508	1	4	5	0	1	0	0	0	0	0	0	0	13185	1015	35	2		2	RASGRP4	19	38901508	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	2562406	38901508	20227475	294	5611											
HNRNPUL1	11100	broad.mit.edu	37	chr19	41807447	41807447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttacccttagacaaatGtttatgggtcagcccagaga	8	10	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41807447	T	T	41807447	3	4	5	1	0	0	0	0	1	0	0	0	7341	1377	48	3	1567	3	HNRNPUL1	19	41807447	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	2905939	41807447	17321536	295	5612											
ZNF285	26974	broad.mit.edu	37	chr19	44896581	44896581	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctttatccaatagtgccAgctcttccttggtgaagaca	10	10	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44896581	T	T	44896581	3	4	5	1	0	0	0	0	1	0	0	0	17948	188	7	5	1715	5	ZNF285	19	44896581	Missense_Mutation	SNP	A	TCGA-05-4384-01A-01D-1753-08	3089134	44896581	14232402	296	5613											
KIR2DL4	3805	broad.mit.edu	37	chr19	55325133	55325133	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgttttgattgcttcCgtctcctacagatgctgctg	9	12	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55325133	T	T	55325133	1	4	5	0	1	0	0	0	0	0	0	0	8389	667	23	4		4	KIR2DL4	19	55325133	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	10428552	55325133	3803850	297	5614											
NLRP7	199713	broad.mit.edu	37	chr19	55445884	55445884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaggaagtgttttgggCgtgtcatggtcttgtacagc	14	7	3	0	rs150034626	byFrequency	TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55445884	A	A	55445884	3	1	5	1	0	0	0	0	1	0	0	0	10577	768	27	3	689	3	NLRP7	19	55445884	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	120751	55445884	3683099	298	5615											
TNNI3	7137	broad.mit.edu	37	chr19	55666180	55666180	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccttgtccacacgggcgtGgagctgtcggcacaagtcct	12	14	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55666180	A	A	55666180	3	1	5	1	0	0	0	0	1	0	0	0	16451	1348	47	4	343	4	TNNI3	19	55666180	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	220296	55666180	3462803	299	5616											
ZFP28	140612	broad.mit.edu	37	chr19	57066566	57066566	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggacaccttaatcaacataaGagagttcatactggagagag	10	7	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57066566	A	A	57066566	2	1	5	1	0	0	0	0	0	0	0	1	17768	933	33	4		4	ZFP28	19	57066566	Silent	SNP	G	TCGA-05-4384-01A-01D-1753-08	1400386	57066566	2062417	300	5617											
CST11	140880	broad.mit.edu	37	chr20	23432392	23432392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcccaactcattctaaaGccacagaaaaacctcactga	3	14	4	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23432392	T	T	23432392	1	4	5	0	1	0	0	0	0	0	0	0	4005	986	34	3		3	CST11	20	23432392	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08		23432392	39593128	301	5618											
CST2	1470	broad.mit.edu	37	chr20	23805985	23805985	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacatgagaaaacaggatgCacggacagcgcccccatcag	10	13	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23805985	T	T	23805985	1	4	5	0	1	0	0	0	0	0	0	0	4006	725	25	4		4	CST2	20	23805985	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	373593	23805985	39219535	302	5619											
TSHZ2	128553	broad.mit.edu	37	chr20	51871865	51871865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaagtccccacgaagaggCctcatctttcagccacagtg	9	13	3	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51871865	A	A	51871865	3	1	5	1	0	0	0	0	1	0	0	0	16749	739	26	3	1874	3	TSHZ2	20	51871865	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	28065880	51871865	11153655	303	5620											
GNAS	2778	broad.mit.edu	37	chr20	57485281	57485281	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacgcactcccactaattctCatatggaaaaatcagggttt	6	10	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57485281	T	T	57485281	1	4	5	0	1	0	0	0	0	0	0	0	6574	841	29	4		4	GNAS	20	57485281	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	5613416	57485281	5540239	304	5621											
CTSZ	1522	broad.mit.edu	37	chr20	57576645	57576645	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccgcagtcgatgacgttcTgcacggacaggagggtggag	16	9	1	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57576645	A	A	57576645	3	1	5	1	0	0	0	0	1	0	0	0	4077	1580	55	5	565	5	CTSZ	20	57576645	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	91364	57576645	5448875	305	5622											
LAMA5	3911	broad.mit.edu	37	chr20	60911316	60911316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccaggaaccctgcaccCcaacactccctccaggatat	5	20	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60911316	A	A	60911316	1	1	5	0	1	0	0	0	0	0	0	0	8681	638	22	2		2	LAMA5	20	60911316	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	3334671	60911316	2114204	306	5623											
CHRNA4	1137	broad.mit.edu	37	chr20	61982143	61982144	+	Missense_Mutation	DNP	CC	TT	TT													catccacgatgacccactcgCcactctcccagaagtccagc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	61982144	TT	TT	61982143	3	4	5	1	0	0	0	0	1	0	0	0	3416	739	26	4	1271	4	CHRNA4	20	61982143	Missense_Mutation	DNP	CC	TCGA-05-4384-01A-01D-1753-08	1070827	61982143	1043377	307	5624											
KCNQ2	3785	broad.mit.edu	37	chr20	62062654	62062655	+	Intron	DEL	CA	-	-													tccagacacagaactagaacCacacacacacacagggcttc							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62062655	-	-	62062654	6	5	5	0	1	1	0	1	0	0	0	0	8153	609	21	0		0	KCNQ2	20	62062654	Intron	DEL	CA	TCGA-05-4384-01A-01D-1753-08	80511	62062654	962866	308	5625											
TPTE	7179	broad.mit.edu	37	chr21	10921840	10921840	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaattttactaagcaccatGactaaaataatcatcttaat	2	8	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10921840	T	T	10921840	1	4	5	0	1	0	0	0	0	0	0	0	16554	1305	45	3		3	TPTE	21	10921840	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08		10921840	37208055	309	5626											
BAGE2	85319	broad.mit.edu	37	chr21	11049502	11049502	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccaacctgcacgttttaAtggagtaaccgctgtatcca	8	11	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11049502	C	C	11049502	1	2	5	0	1	0	0	0	0	0	0	0	1297	116	4	5		5	BAGE2	21	11049502	3'UTR	SNP	A	TCGA-05-4384-01A-01D-1753-08	127662	11049502	37080393	310	5627											
SAMSN1	64092	broad.mit.edu	37	chr21	15889331	15889331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgaagttttactttgttctCcacttccatttgtgggatct	7	8	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15889331	A	A	15889331	3	1	5	1	0	0	0	0	1	0	0	0	13941	855	30	3	984	3	SAMSN1	21	15889331	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	4839829	15889331	32240564	311	5628											
KRTAP6-3	337968	broad.mit.edu	37	chr21	31964831	31964831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatggtggccatggctatGggtgctgtggctacggaggc	17	8	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31964831	T	T	31964831	3	4	5	1	0	0	0	0	1	0	0	0	8643	1348	47	2	69	2	KRTAP6-3	21	31964831	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	16075500	31964831	16165064	312	5629											
LSS	4047	broad.mit.edu	37	chr21	47642572	47642573	+	Missense_Mutation	DNP	CT	AA	AA													gccaccgtcagggagctgcaCtgaccgcaggtaccgcacaa							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47642573	AA	AA	47642572	3	1	5	1	0	0	0	0	1	0	0	0	9152	565	20	3	1874	3	LSS	21	47642572	Missense_Mutation	DNP	CT	TCGA-05-4384-01A-01D-1753-08	15677741	47642572	487323	313	5630											
EIF3D	8664	broad.mit.edu	37	chr22	36914664	36914672	+	Intron	DEL	AAGAGTGTG	-	-													gtctcttctcctaacctctaAagagtgtgggagattcagac							TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36914672	-	-	36914664	6	5	5	0	1	1	0	1	0	0	0	0	5056	29	1	0		0	EIF3D	22	36914664	Intron	DEL	AAGAGTGTG	TCGA-05-4384-01A-01D-1753-08		36914664	14389902	314	5631											
IL2RB	3560	broad.mit.edu	37	chr22	37533447	37533447	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatccccaggattaaggggGctagataaggacgtggaagt	16	6	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37533447	C	C	37533447	1	2	5	0	1	0	0	0	0	0	0	0	7757	1218	42	4		4	IL2RB	22	37533447	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	618783	37533447	13771119	315	5632											
CDC42EP1	11135	broad.mit.edu	37	chr22	37962886	37962886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccagaggggttcagtgGctcctccaagctccaagtga	13	12	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37962886	T	T	37962886	1	4	5	0	1	0	0	0	0	0	0	0	3105	1218	42	3		3	CDC42EP1	22	37962886	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	429439	37962886	13341680	316	5633											
APOBEC3D	140564	broad.mit.edu	37	chr22	39410436	39410436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgccacttcctgccaggCggtcctgctgggcctcagcc	11	18	1	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39410436	T	T	39410436	1	4	5	0	1	0	0	0	0	0	0	0	794	783	27	4		4	APOBEC3D	22	39410436	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	1447550	39410436	11894130	317	5634											
CSDC2	27254	broad.mit.edu	37	chr22	41969838	41969838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagtgtccccaatggtgcCtcaaaaatggctctccaggc	9	14	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41969838	A	A	41969838	1	1	5	0	1	0	0	0	0	0	0	0	3962	696	24	2		2	CSDC2	22	41969838	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	2559402	41969838	9334728	318	5635											
PNPLA3	80339	broad.mit.edu	37	chr22	44328953	44328953	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcgagagcttttgtcCccccggatctcaaggtgagt	10	12	2	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44328953	T	T	44328953	3	4	5	1	0	0	0	0	1	0	0	0	12261	623	22	4	696	4	PNPLA3	22	44328953	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	2359115	44328953	6975613	319	5636											
NUP50	10762	broad.mit.edu	37	chr22	45574368	45574368	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaatatttagcaaacaTtgaacagcaacacgggaaca	8	7	0	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45574368	C	C	45574368	3	2	5	1	0	0	0	0	1	0	0	0	10861	1493	52	5	604	5	NUP50	22	45574368	Missense_Mutation	SNP	T	TCGA-05-4384-01A-01D-1753-08	1245415	45574368	5730198	320	5637											
ALG12	79087	broad.mit.edu	37	chr22	50302947	50302947	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaaagcacctttccttccGgccaagtgagctgccgccaa	8	16	0	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50302947	A	A	50302947	3	1	5	1	0	0	0	0	1	0	0	0	514	1116	39	4	773	4	ALG12	22	50302947	Missense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	4728579	50302947	1001619	321	5638											
CRELD2	79174	broad.mit.edu	37	chr22	50313909	50313909	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctcggtgcgtttctcctCagggaaatcccatctcctac	8	14	4	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50313909	A	A	50313909	1	1	5	0	1	0	0	0	0	0	0	0	3899	841	29	3		3	CRELD2	22	50313909	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	10962	50313909	990657	322	5639											
CHKB	1120	broad.mit.edu	37	chr22	51020255	51020255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaccgctccgcaagtatggCgaacatcacgctttctagca	9	14	2	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51020255	A	A	51020255	3	1	5	1	0	0	0	0	1	0	0	0	3379	768	27	3	853	3	CHKB	22	51020255	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	706346	51020255	284311	323	5640											
CHKB	1120	broad.mit.edu	37	chr22	51021107	51021107	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcgacgaggcgcgccgcCgttttggggtagtgtccggg	18	11	0	0			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51021107	T	T	51021107	3	4	5	1	0	0	0	0	1	0	0	0	3379	652	23	4	1127	4	CHKB	22	51021107	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	852	51021107	283459	324	5641											
PPP2R3B	28227	broad.mit.edu	37	chrX	307900	307900	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagacgccggccctcccatGaggcatgcggtgtagacgcg	15	13	0	3			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	307900	A	A	307900	1	1	5	0	1	0	0	0	0	0	0	0	12490	1305	45	4		4	PPP2R3B	23	307900	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08		307900	154962660	325	5642											
MXRA5	25878	broad.mit.edu	37	chrX	3240769	3240769	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttatcctcatctggttgtGacttagtctccaaatctggg	8	10	5	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3240769	C	C	3240769	4	2	5	1	0	0	0	0	0	1	0	0	10097	1294	45	4	5541	4	MXRA5	23	3240769	Nonsense_Mutation	SNP	G	TCGA-05-4384-01A-01D-1753-08	2932869	3240769	152029791	326	5643											
PRKX	5613	broad.mit.edu	37	chrX	3573373	3573373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaagcgcccccggttgCgcaggtagctgaagagctcg	16	11	0	3	rs145956134		TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3573373	A	A	3573373	3	1	5	1	0	0	0	0	1	0	0	0	12633	768	27	3	684	3	PRKX	23	3573373	Missense_Mutation	SNP	C	TCGA-05-4384-01A-01D-1753-08	332604	3573373	151697187	327	5644											
SCML2	10389	broad.mit.edu	37	chrX	18259507	18259507	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccatcaatttcctacagaGagaaggaaatcataatcatt	5	9	3	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18259507	C	C	18259507	1	2	5	0	1	0	0	0	0	0	0	0	14023	957	33	4		4	SCML2	23	18259507	Intron	SNP	G	TCGA-05-4384-01A-01D-1753-08	14686134	18259507	137011053	328	5645											
FAM47C	442444	broad.mit.edu	37	chrX	37028496	37028496	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctccccccggagcccccCgagactggagtgtcccatct	10	18	2	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37028496	T	T	37028496	2	4	5	1	0	0	0	0	0	0	0	1	5622	639	23	4		4	FAM47C	23	37028496	Silent	SNP	C	TCGA-05-4384-01A-01D-1753-08	18768989	37028496	118242064	329	5646											
ATP7A	538	broad.mit.edu	37	chrX	77271196	77271196	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actaaagagcttacatggagAggtcagggtaggaagcatat	13	5	1	2			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77271196	C	C	77271196	1	2	5	0	1	0	0	0	0	0	0	0	1194	319	11	5		5	ATP7A	23	77271196	Intron	SNP	A	TCGA-05-4384-01A-01D-1753-08	40242700	77271196	77999364	330	5647											
CNGA2	1260	broad.mit.edu	37	chrX	150909128	150909128	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctgaaaaatgtggccctCagccaacccatctttcaccc	5	17	3	1			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150909128	T	T	150909128	1	4	5	0	1	0	0	0	0	0	0	0	3629	841	29	4		4	CNGA2	23	150909128	Intron	SNP	C	TCGA-05-4384-01A-01D-1753-08	73637932	150909128	4361432	331	5648											
LRRC47	57470	broad.mit.edu	37	chr1	3699302	3699302	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaagacacgggtaattttCatttccatccagcaagtgaa	7	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3699302	A	A	3699302	4	1	6	1	0	0	0	0	0	1	0	0	9091	835	29	3	427	3	LRRC47	1	3699302	Nonsense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08		3699302	245551319	1	5649											
PIK3CD	5293	broad.mit.edu	37	chr1	9782275	9782275	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccggtagaggagcccctgCtgactgcccgctctctggcc	14	16	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9782275	T	T	9782275	1	4	6	0	1	0	0	0	0	0	0	0	12010	812	28	4		4	PIK3CD	1	9782275	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	6082973	9782275	239468346	2	5650											
KIF1B	23095	broad.mit.edu	37	chr1	10436630	10436630	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttcccgcagatgcccgagCcagtcgaaatactaagtgac	9	13	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10436630	G	G	10436630	3	3	6	1	0	0	0	0	1	0	0	0	8354	738	26	4	6969	4	KIF1B	1	10436630	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	654355	10436630	238813991	3	5651											
TMCO4	255104	broad.mit.edu	37	chr1	20073736	20073736	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccggttttctttcttctttCgggatgcctcggccattctg	9	12	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20073736	T	T	20073736	3	4	6	1	0	0	0	0	1	0	0	0	16121	884	31	4	1407	4	TMCO4	1	20073736	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	9637106	20073736	229176885	4	5652											
SNRNP40	9410	broad.mit.edu	37	chr1	31769485	31769485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggctcccggcgtcgcCtgctgctgcccggctcctgg	14	17	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31769485	A	A	31769485	3	1	6	1	0	0	0	0	1	0	0	0	14970	680	24	2	999	2	SNRNP40	1	31769485	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	11695749	31769485	217481136	5	5653											
CSMD2	114784	broad.mit.edu	37	chr1	34189951	34189951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcagtgaaagaccagagGgcctcaggggagcacccccg	16	12	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34189951	T	T	34189951	1	4	6	0	1	0	0	0	0	0	0	0	3979	1247	43	2		2	CSMD2	1	34189951	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2420466	34189951	215060670	6	5654											
GRIK3	2899	broad.mit.edu	37	chr1	37271696	37271696	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccctcccacaggcagcccCtcgctcacccatgggcgtgc	9	21	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37271696	T	T	37271696	1	4	6	0	1	0	0	0	0	0	0	0	6841	696	24	4		4	GRIK3	1	37271696	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	3081745	37271696	211978925	7	5655											
PABPC4	8761	broad.mit.edu	37	chr1	40035231	40035231	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccatactctggggcaacctCttaaaagcttttcccaatct	5	14	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40035231	G	G	40035231	1	3	6	0	1	0	0	0	0	0	0	0	11460	928	32	4		4	PABPC4	1	40035231	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2763535	40035231	209215390	8	5656											
C1orf175	374977	broad.mit.edu	37	chr1	55161185	55161185	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccaacgggggcagcgggtAcacagcgggagctcctcccg	15	14	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55161185	T	T	55161185	1	4	6	0	1	0	0	0	0	0	0	0	2036	406	14	5		5	C1orf175	1	55161185	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	15125954	55161185	194089436	9	5657											
SGIP1	84251	broad.mit.edu	37	chr1	67101732	67101732	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttagtttaaaatttccaaAgggttataaaaaacagtgag	7	3	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67101732	G	G	67101732	1	3	6	0	1	0	0	0	0	0	0	0	14319	87	3	5		5	SGIP1	1	67101732	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	11940547	67101732	182148889	10	5658											
LRRC7	57554	broad.mit.edu	37	chr1	70541760	70541760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagattatcttctccacagGcaggcagccacatccagacg	8	14	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70541760	T	T	70541760	3	4	6	1	0	0	0	0	1	0	0	0	9107	1217	42	3	4203	3	LRRC7	1	70541760	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	3440028	70541760	178708861	11	5659											
USP33	23032	broad.mit.edu	37	chr1	78194222	78194222	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agccattttcattttctgctCtatcactgttgctacaagat	5	10	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78194222	A	A	78194222	3	1	6	1	0	0	0	0	1	0	0	0	17191	913	32	3	1914	3	USP33	1	78194222	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	7652462	78194222	171056399	12	5660											
LPHN2	23266	broad.mit.edu	37	chr1	82409320	82409320	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccgaggagaatatgtagaTgttcccttccccaaccagta	8	11	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82409320	G	G	82409320	3	3	6	1	0	0	0	0	1	0	0	0	9003	1461	51	5	1079	5	LPHN2	1	82409320	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	4215098	82409320	166841301	13	5661											
LPHN2	23266	broad.mit.edu	37	chr1	82432241	82432241	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtttcaatcaataaagagtCcagccgagtatacctgactg	8	9	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82432241	T	T	82432241	3	4	6	1	0	0	0	0	1	0	0	0	9003	855	30	4	2284	4	LPHN2	1	82432241	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	22921	82432241	166818380	14	5662											
EVI5	7813	broad.mit.edu	37	chr1	93113127	93113127	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtttctcttatgttcttCtctgcatgtctgcacaaaga	8	9	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93113127	T	T	93113127	1	4	6	0	1	0	0	0	0	0	0	0	5331	928	32	4		4	EVI5	1	93113127	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	10680886	93113127	156137494	15	5663											
SLC6A17	388662	broad.mit.edu	37	chr1	110735252	110735252	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgtacaatgtcatcatgAccgtgaaggaggaccagttc	11	8	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110735252	G	G	110735252	3	3	6	1	0	0	0	0	1	0	0	0	14794	275	10	5	1257	5	SLC6A17	1	110735252	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	17622125	110735252	138515369	16	5664											
PDE4DIP	9659	broad.mit.edu	37	chr1	144902975	144902975	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaatcagacaaggatctttCtggttagtgcaaacaaggtt	9	6	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144902975	T	T	144902975	1	4	6	0	1	0	0	0	0	0	0	0	11737	928	32	4		4	PDE4DIP	1	144902975	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	34167723	144902975	104347646	17	5665											
ITGA10	8515	broad.mit.edu	37	chr1	145525061	145525061	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catactggacagaaaccgatCaggcatggaactccccttcg	9	13	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145525061	T	T	145525061	1	4	6	0	1	0	0	0	0	0	0	0	7943	841	29	4		4	ITGA10	1	145525061	5'UTR	SNP	C	TCGA-05-4389-01A-01D-1265-08	622086	145525061	103725560	18	5666											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858806	149858806	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccgcaacgacgaggaactGaacaagctgctgggcaaagt	12	10	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149858806	A	A	149858806	2	1	6	1	0	0	0	0	0	0	0	1	7245	1277	45	4		4	HIST2H2AC	1	149858806	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	4333745	149858806	99391815	19	5667											
SV2A	9900	broad.mit.edu	37	chr1	149885007	149885007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccccagggggaccctccCcatcactcaagccccccctt	8	22	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149885007	A	A	149885007	3	1	6	1	0	0	0	0	1	0	0	0	15535	623	22	2	1890	2	SV2A	1	149885007	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	26201	149885007	99365614	20	5668											
TARS2	80222	broad.mit.edu	37	chr1	150464139	150464139	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacagcaacagtatatggGtaagagttgtcaagattaag	10	6	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150464139	A	A	150464139	5	1	6	1	0	0	0	0	0	0	1	0	15679	1275	44	4	718	4	TARS2	1	150464139	Splice_Site	SNP	G	TCGA-05-4389-01A-01D-1265-08	579132	150464139	98786482	21	5669											
SCNM1	79005	broad.mit.edu	37	chr1	151138584	151138584	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggtggcctggaggagtggcGaaaccggaacagagaattta	16	7	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151138584	A	A	151138584	1	1	6	0	1	0	0	0	0	0	0	0	14039	1073	37	4		4	SCNM1	1	151138584	5'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08	674445	151138584	98112037	22	5670											
SPRR4	163778	broad.mit.edu	37	chr1	152944717	152944717	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaccctcctctcacatctcCtcctgcccaagatgtaagga	5	17	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152944717	T	T	152944717	1	4	6	0	1	0	0	0	0	0	0	0	15222	696	24	4		4	SPRR4	1	152944717	3'UTR	SNP	C	TCGA-05-4389-01A-01D-1265-08	1806133	152944717	96305904	23	5671											
S100A13	6284	broad.mit.edu	37	chr1	153598847	153598847	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctctttgaactcgttgacGctgaggctatccttccggcc	10	13	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153598847	A	A	153598847	2	1	6	1	0	0	0	0	0	0	0	1	13886	1078	38	4		4	S100A13	1	153598847	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	654130	153598847	95651774	24	5672											
INTS3	65123	broad.mit.edu	37	chr1	153713683	153713683	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttccttaggagtcccatGttttctgggagaaactgagt	10	8	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153713683	A	A	153713683	1	1	6	0	1	0	0	0	0	0	0	0	7849	1392	48	4		4	INTS3	1	153713683	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	114836	153713683	95536938	25	5673											
GATAD2B	57459	broad.mit.edu	37	chr1	153831142	153831142	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcacttgggtctatgtaaaGgctgaagtgagccatgactg	12	7	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153831142	C	C	153831142	1	2	6	0	1	0	0	0	0	0	0	0	6323	1015	35	4		4	GATAD2B	1	153831142	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	117459	153831142	95419479	26	5674											
IL6R	3570	broad.mit.edu	37	chr1	154422396	154422396	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctcttttaggcacttactActaataaagacgatgataat	6	7	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154422396	T	T	154422396	3	4	6	1	0	0	0	0	1	0	0	0	7772	391	14	5	1036	5	IL6R	1	154422396	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	591254	154422396	94828225	27	5675											
CLK2	1196	broad.mit.edu	37	chr1	155234395	155234395	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcttaggtggccccaccctCacatcatctcacacacttgg	8	16	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155234395	T	T	155234395	1	4	6	0	1	0	0	0	0	0	0	0	3569	841	29	4		4	CLK2	1	155234395	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	811999	155234395	94016226	28	5676											
ASH1L	55870	broad.mit.edu	37	chr1	155448829	155448829	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctgtctatttcgaagctGgggatatttctttttccgtt	8	8	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155448829	A	A	155448829	4	1	6	1	0	0	0	0	0	1	0	0	1045	1357	47	4	5166	4	ASH1L	1	155448829	Nonsense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	214434	155448829	93801792	29	5677											
FCRL5	83416	broad.mit.edu	37	chr1	157509129	157509129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcctcaggagagctgagGttgaggacaggatgagacac	16	7	1	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157509129	T	T	157509129	3	4	6	1	0	0	0	0	1	0	0	0	5855	1252	44	3	1828	3	FCRL5	1	157509129	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2060300	157509129	91741492	30	5678											
SPTA1	6708	broad.mit.edu	37	chr1	158584068	158584068	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattgtgctaaattcctttaGagtctcttcactcacacctt	5	11	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158584068	A	A	158584068	2	1	6	1	0	0	0	0	0	0	0	1	15234	933	33	4		4	SPTA1	1	158584068	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1074939	158584068	90666553	31	5679											
SPTA1	6708	broad.mit.edu	37	chr1	158596512	158596512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagaaaggataggaatgGgtagtgatggaaacacctcc	13	7	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158596512	T	T	158596512	1	4	6	0	1	0	0	0	0	0	0	0	15234	1247	43	2		2	SPTA1	1	158596512	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	12444	158596512	90654109	32	5680											
SPTA1	6708	broad.mit.edu	37	chr1	158596650	158596650	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatccaagcctctaccacatCagccttccagttgaattcct	4	15	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158596650	T	T	158596650	3	4	6	1	0	0	0	0	1	0	0	0	15234	826	29	4	1495	4	SPTA1	1	158596650	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	138	158596650	90653971	33	5681											
ATF6	22926	broad.mit.edu	37	chr1	161833091	161833091	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagacacattttatgttgtgTcatttcgaagggtaagttca	10	5	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161833091	G	G	161833091	3	3	6	1	0	0	0	0	1	0	0	0	1088	1667	58	5	1762	5	ATF6	1	161833091	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	3236441	161833091	87417530	34	5682											
TBX19	9095	broad.mit.edu	37	chr1	168266910	168266910	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagacaaagggttctgttTgcccatgtgtatcctacttt	9	8	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168266910	C	C	168266910	1	2	6	0	1	0	0	0	0	0	0	0	15776	1827	63	5		5	TBX19	1	168266910	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	6433819	168266910	80983711	35	5683											
TNN	63923	broad.mit.edu	37	chr1	175063094	175063094	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgactaaccaactggtttctCtgatttttctttctcatgtg	6	9	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175063094	T	T	175063094	1	4	6	0	1	0	0	0	0	0	0	0	16446	928	32	4		4	TNN	1	175063094	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	6796184	175063094	74187527	36	5684											
TNR	7143	broad.mit.edu	37	chr1	175325656	175325656	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctactcagtttaggaaagatCtaccaaatccaaaggtattt	6	8	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175325656	A	A	175325656	1	1	6	0	1	0	0	0	0	0	0	0	16461	928	32	3		3	TNR	1	175325656	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	262562	175325656	73924965	37	5685											
TNR	7143	broad.mit.edu	37	chr1	175360440	175360440	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgtggagacgctggcCgaggtaggggggctgcgggc	20	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175360440	A	A	175360440	2	1	6	1	0	0	0	0	0	0	0	1	16461	639	23	1		1	TNR	1	175360440	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	34784	175360440	73890181	38	5686											
TDRD5	163589	broad.mit.edu	37	chr1	179631407	179631407	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcagtattcatcatgtaaaGaaatgccacagaaggttaga	8	6	3	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179631407	C	C	179631407	3	2	6	1	0	0	0	0	1	0	0	0	15855	943	33	4	2379	4	TDRD5	1	179631407	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	4270967	179631407	69619214	39	5687											
CACNA1E	777	broad.mit.edu	37	chr1	181759695	181759695	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagaacggcagtctctggtGaatgcatgagttatatgacc	11	8	1	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181759695	A	A	181759695	1	1	6	0	1	0	0	0	0	0	0	0	2568	1305	45	4		4	CACNA1E	1	181759695	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2128288	181759695	67490926	40	5688											
RGS8	85397	broad.mit.edu	37	chr1	182640801	182640801	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatactcactgtctttggCcagtcctcatggcctgaggg	11	12	3	1	rs141271906	by1000genomes	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182640801	A	A	182640801	1	1	6	0	1	0	0	0	0	0	0	0	13421	739	26	3		3	RGS8	1	182640801	5'UTR	SNP	C	TCGA-05-4389-01A-01D-1265-08	881106	182640801	66609820	41	5689											
DHX9	1660	broad.mit.edu	37	chr1	182852799	182852799	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcagatgtgaactccaaaCtgaattcttagaattacaat	5	7	2	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182852799	G	G	182852799	1	3	6	0	1	0	0	0	0	0	0	0	4556	580	20	4		4	DHX9	1	182852799	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	211998	182852799	66397822	42	5690											
GLT25D2	23127	broad.mit.edu	37	chr1	183908081	183908081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcactcaggtaccccggCtggcctgtgtagtgcgtagg	15	11	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183908081	A	A	183908081	3	1	6	1	0	0	0	0	1	0	0	0	6531	796	28	3	189	3	GLT25D2	1	183908081	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1055282	183908081	65342540	43	5691											
PLEKHA6	22874	broad.mit.edu	37	chr1	204228701	204228702	+	Missense_Mutation	DNP	TC	AA	AA													cattggctttcaccggaggcTctttcttgacttctggcctc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	204228702	AA	AA	204228701	3	1	6	1	0	0	0	0	1	0	0	0	12155	1551	54	5	2514	5	PLEKHA6	1	204228701	Missense_Mutation	DNP	TC	TCGA-05-4389-01A-01D-1265-08	20320620	204228701	45021920	44	5692											
CNTN2	6900	broad.mit.edu	37	chr1	205041749	205041749	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagcaatcagctaggcccaGaatgggaaggaacagctcct	12	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205041749	A	A	205041749	1	1	6	0	1	0	0	0	0	0	0	0	3673	957	33	4		4	CNTN2	1	205041749	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	813048	205041749	44208872	45	5693											
NUCKS1	64710	broad.mit.edu	37	chr1	205689671	205689671	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctcttcttgttcttcctCactgcccacatcttccatga	3	17	5	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205689671	T	T	205689671	3	4	6	1	0	0	0	0	1	0	0	0	10815	835	29	4	403	4	NUCKS1	1	205689671	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	647922	205689671	43560950	46	5694											
RAB7L1	8934	broad.mit.edu	37	chr1	205740776	205740776	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtcatagaggtgaagcgctCctgccctggggagaaagggg	17	8	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205740776	G	G	205740776	3	3	6	1	0	0	0	0	1	0	0	0	13063	864	30	4	421	4	RAB7L1	1	205740776	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	51105	205740776	43509845	47	5695											
USH2A	7399	broad.mit.edu	37	chr1	215848937	215848937	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagagtactccaggaaccCgtcactgaagatgttgtatg	10	10	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215848937	T	T	215848937	3	4	6	1	0	0	0	0	1	0	0	0	17162	652	23	4	3332	4	USH2A	1	215848937	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	10108161	215848937	33401684	48	5696											
CDC42BPA	8476	broad.mit.edu	37	chr1	227441855	227441855	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttagaagtaaatggtttAgctgaaatgaaagagcaata	9	3	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227441855	G	G	227441855	2	3	6	1	0	0	0	0	0	0	0	1	3102	434	15	5		5	CDC42BPA	1	227441855	Silent	SNP	A	TCGA-05-4389-01A-01D-1265-08	11592918	227441855	21808766	49	5697											
KIAA1804	84451	broad.mit.edu	37	chr1	233514864	233514864	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccacagtctccattgagatGactcctacgaatagtctgag	9	11	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233514864	T	T	233514864	3	4	6	1	0	0	0	0	1	0	0	0	8329	1290	45	3	2146	3	KIAA1804	1	233514864	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	6073009	233514864	15735757	50	5698											
SLC35F3	148641	broad.mit.edu	37	chr1	234367568	234367568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagctgcccctggtgGcaggcgctgggatgagccgg	18	12	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234367568	T	T	234367568	1	4	6	0	1	0	0	0	0	0	0	0	14704	1218	42	3		3	SLC35F3	1	234367568	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	852704	234367568	14883053	51	5699											
RYR2	6262	broad.mit.edu	37	chr1	237774276	237774276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcatgtctcttcatatccCtgaggaaaacaggtcagccc	8	12	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237774276	A	A	237774276	3	1	6	1	0	0	0	0	1	0	0	0	13880	681	24	2	5040	2	RYR2	1	237774276	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	3406708	237774276	11476345	52	5700											
CHRM3	1131	broad.mit.edu	37	chr1	240071333	240071333	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgatcggtctggcttgggtCatctcctttgtcctttgggc	12	10	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240071333	A	A	240071333	2	1	6	1	0	0	0	0	0	0	0	1	3409	813	29	3		3	CHRM3	1	240071333	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2297057	240071333	9179288	53	5701											
ZNF669	79862	broad.mit.edu	37	chr1	247265290	247265290	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgttgtcattcttaccTacagaagccaggttcctgca	8	10	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247265290	C	C	247265290	2	2	6	1	0	0	0	0	0	0	0	1	18203	1536	53	5		5	ZNF669	1	247265290	Silent	SNP	T	TCGA-05-4389-01A-01D-1265-08	7193957	247265290	1985331	54	5702											
OR2B11	127623	broad.mit.edu	37	chr1	247615310	247615310	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattttctggcacttgtgGcaaattgagaaaattggaat	11	5	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247615310	T	T	247615310	1	4	6	0	1	0	0	0	0	0	0	0	11082	1218	42	3		3	OR2B11	1	247615310	5'Flank	SNP	G	TCGA-05-4389-01A-01D-1265-08	350020	247615310	1635311	55	5703											
OR2C3	81472	broad.mit.edu	37	chr1	247695011	247695011	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaacttgccctgctcatggGaggtgctcttggctggctgg	15	10	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247695011	C	C	247695011	3	2	6	1	0	0	0	0	1	0	0	0	11087	1174	41	4	163	4	OR2C3	1	247695011	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	79701	247695011	1555610	56	5704											
OR2M3	127062	broad.mit.edu	37	chr1	248366369	248366369	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggtaaaaagcatacacatCatggcaagggagaattcgac	10	7	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366369	T	T	248366369	1	4	6	0	1	0	0	0	0	0	0	0	11105	841	29	4		4	OR2M3	1	248366369	5'Flank	SNP	C	TCGA-05-4389-01A-01D-1265-08	671358	248366369	884252	57	5705											
ACP1	52	broad.mit.edu	37	chr2	277226	277226	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttcctgtccatttaGgggaatgactctgactttga	8	8	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	277226	T	T	277226	5	4	6	1	0	0	0	0	0	0	1	0	162	1014	35	2	576	2	ACP1	2	277226	Splice_Site	SNP	G	TCGA-05-4389-01A-01D-1265-08		277226	242922147	58	5706											
PXDN	7837	broad.mit.edu	37	chr2	1652006	1652006	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggtcctcgaacgtgtgTgccgccgatagattgcagta	12	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1652006	A	A	1652006	2	1	6	1	0	0	0	0	0	0	0	1	12955	1683	59	5		5	PXDN	2	1652006	Silent	SNP	T	TCGA-05-4389-01A-01D-1265-08	1374780	1652006	241547367	59	5707											
ITGB1BP1	9270	broad.mit.edu	37	chr2	9552681	9552681	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaatatttttatgtaatGgggaagaacttaaaatttca	6	4	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9552681	A	A	9552681	1	1	6	0	1	0	0	0	0	0	0	0	7961	1363	47	4		4	ITGB1BP1	2	9552681	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	7900675	9552681	233646692	60	5708											
C2orf44	80304	broad.mit.edu	37	chr2	24260579	24260579	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgaacataaggaagatcttGagagagtggatacactgaag	13	4	1	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24260579	C	C	24260579	3	2	6	1	0	0	0	0	1	0	0	0	2190	1299	45	4	391	4	C2orf44	2	24260579	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	14707898	24260579	218938794	61	5709											
C2orf39	92749	broad.mit.edu	37	chr2	26624954	26624954	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggtccactccgacaactctCaggagcgcatccaggcccgg	11	17	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26624954	G	G	26624954	3	3	6	1	0	0	0	0	1	0	0	0	2186	827	29	4	99	4	C2orf39	2	26624954	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2364375	26624954	216574419	62	5710											
PLB1	151056	broad.mit.edu	37	chr2	28766143	28766143	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggaataggatggtgagtaGatggggcctggggtggggcc	21	5	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28766143	T	T	28766143	1	4	6	0	1	0	0	0	0	0	0	0	12119	957	33	3		3	PLB1	2	28766143	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2141189	28766143	214433230	63	5711											
EHD3	30845	broad.mit.edu	37	chr2	31489172	31489172	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccaggaggagtcacagCggcccatccagatggtgaag	15	11	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31489172	T	T	31489172	3	4	6	1	0	0	0	0	1	0	0	0	5019	759	27	4	1232	4	EHD3	2	31489172	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2723029	31489172	211710201	64	5712											
SLC8A1	6546	broad.mit.edu	37	chr2	40402034	40402034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatttgacactctacataaCaaataccagtgacatcagac	4	10	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40402034	A	A	40402034	1	1	6	0	1	0	0	0	0	0	0	0	14820	493	17	3		3	SLC8A1	2	40402034	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	8912862	40402034	202797339	65	5713											
ASPRV1	151516	broad.mit.edu	37	chr2	70188284	70188284	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctctttgggcaggtggctGggggcagccccagggacccc	16	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70188284	A	A	70188284	2	1	6	1	0	0	0	0	0	0	0	1	1062	1335	47	4		4	ASPRV1	2	70188284	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	29786250	70188284	173011089	66	5714											
FAM136A	84908	broad.mit.edu	37	chr2	70528037	70528037	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagaggcacatggcagcgctCgatgcactggtgcacctgct	13	13	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70528037	G	G	70528037	3	3	6	1	0	0	0	0	1	0	0	0	5496	893	31	4	261	4	FAM136A	2	70528037	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	339753	70528037	172671336	67	5715											
CTNNA2	1496	broad.mit.edu	37	chr2	80101241	80101241	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgggatgagatggcagccGcccgaggggctctgaagaag	18	9	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80101241	A	A	80101241	3	1	6	1	0	0	0	0	1	0	0	0	4047	1087	38	4	643	4	CTNNA2	2	80101241	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	9573204	80101241	163098132	68	5716											
ZNF514	84874	broad.mit.edu	37	chr2	95815560	95815560	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttctccagtgtgacatcGctgatggcgcctaagttctg	10	11	2	2	rs144989588		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95815560	T	T	95815560	2	4	6	1	0	0	0	0	0	0	0	1	18086	1095	38	3		3	ZNF514	2	95815560	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	15714319	95815560	147383813	69	5717											
SNRNP200	23020	broad.mit.edu	37	chr2	96949642	96949642	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccagtgggccacatccTtggcattggagagcgaagag	14	11	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96949642	C	C	96949642	3	2	6	1	0	0	0	0	1	0	0	0	14966	1609	56	5	1973	5	SNRNP200	2	96949642	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	1134082	96949642	146249731	70	5718											
SULT1C3	442038	broad.mit.edu	37	chr2	108869110	108869110	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactctagattgggtcttcAgggcttcctcctgttcttag	9	10	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108869110	G	G	108869110	1	3	6	0	1	0	0	0	0	0	0	0	15496	203	7	5		5	SULT1C3	2	108869110	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	11919468	108869110	134330263	71	5719											
GCC2	9648	broad.mit.edu	37	chr2	109116083	109116083	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagctaacctggaatacttGaagaacgtcttgctgcagtt	10	9	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109116083	C	C	109116083	3	2	6	1	0	0	0	0	1	0	0	0	6348	1281	45	4	4943	4	GCC2	2	109116083	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	246973	109116083	134083290	72	5720											
ANAPC1	64682	broad.mit.edu	37	chr2	112625797	112625797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacctactatctcaaaatgCaatcttctaaactttgtaca	2	10	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112625797	A	A	112625797	1	1	6	0	1	0	0	0	0	0	0	0	598	725	25	3		3	ANAPC1	2	112625797	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	3509714	112625797	130573576	73	5721											
SLC20A1	6574	broad.mit.edu	37	chr2	113414815	113414815	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaggatgaagagaaaaattGaacgtaagtaataactaaac	8	5	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113414815	A	A	113414815	3	1	6	1	0	0	0	0	1	0	0	0	14551	1291	45	4	793	4	SLC20A1	2	113414815	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	789018	113414815	129784558	74	5722											
ERCC3	2071	broad.mit.edu	37	chr2	128018852	128018852	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatctctgccgcttggttgaGtaagccatttcctgtgtgtc	10	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128018852	A	A	128018852	2	1	6	1	0	0	0	0	0	0	0	1	5256	1024	36	4		4	ERCC3	2	128018852	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	14604037	128018852	115180521	75	5723											
SMPD4	55627	broad.mit.edu	37	chr2	130918865	130918865	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgagataagaaacagagaGatgccggaagaggccgaaga	15	6	0	6			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130918865	T	T	130918865	1	4	6	0	1	0	0	0	0	0	0	0	14921	957	33	3		3	SMPD4	2	130918865	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2900013	130918865	112280508	76	5724											
TUBA3E	112714	broad.mit.edu	37	chr2	130951907	130951907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggggctgggtaaatggCaaactctagcttggacttct	14	8	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130951907	A	A	130951907	3	1	6	1	0	0	0	0	1	0	0	0	16874	710	25	3	852	3	TUBA3E	2	130951907	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	33042	130951907	112247466	77	5725											
TUBA3D	113457	broad.mit.edu	37	chr2	132237774	132237774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagtccaagctagagtttGccatttacccagccccccag	8	14	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132237774	T	T	132237774	3	4	6	1	0	0	0	0	1	0	0	0	16873	1319	46	3	522	3	TUBA3D	2	132237774	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1285867	132237774	110961599	78	5726											
LRP1B	53353	broad.mit.edu	37	chr2	140992396	140992396	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatcagagtttaggtagaTgggcggcgctgtgtgtggaa	16	5	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140992396	C	C	140992396	3	2	6	1	0	0	0	0	1	0	0	0	9042	1464	51	5	189	5	LRP1B	2	140992396	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	8754622	140992396	102206977	79	5727											
SLC4A10	57282	broad.mit.edu	37	chr2	162735721	162735721	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagaactggagttcttggaTcgaacagtagttgcgtttgt	14	5	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162735721	A	A	162735721	3	1	6	1	0	0	0	0	1	0	0	0	14765	1432	50	5	1148	5	SLC4A10	2	162735721	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	21743325	162735721	80463652	80	5728											
KBTBD10	10324	broad.mit.edu	37	chr2	170366206	170366206	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctgggcaaagcacactgAtctgcctttttacagctaga	9	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170366206	G	G	170366206	1	3	6	0	1	0	0	0	0	0	0	0	8060	348	12	5		5	KBTBD10	2	170366206	5'Flank	SNP	A	TCGA-05-4389-01A-01D-1265-08	7630485	170366206	72833167	81	5729											
GPR155	151556	broad.mit.edu	37	chr2	175301048	175301048	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accagcctgtctccgtatatCacagcttcaccacggtcgga	8	15	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175301048	G	G	175301048	2	3	6	1	0	0	0	0	0	0	0	1	6725	813	29	4		4	GPR155	2	175301048	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	4934842	175301048	67898325	82	5730											
TTN	7273	broad.mit.edu	37	chr2	179425729	179425729	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctgcaatgtctgcatttAtcttaaggacctctccagct	7	13	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179425729	G	G	179425729	3	3	6	1	0	0	0	0	1	0	0	0	16861	449	16	5	22997	5	TTN	2	179425729	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	4124681	179425729	63773644	83	5731											
COL3A1	1281	broad.mit.edu	37	chr2	189854795	189854795	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttctcatacatgagcacCtacgtattctttatttctct	3	10	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189854795	T	T	189854795	1	4	6	0	1	0	0	0	0	0	0	0	3720	696	24	4		4	COL3A1	2	189854795	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	10429066	189854795	53344578	84	5732											
SDPR	8436	broad.mit.edu	37	chr2	192700900	192700900	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttccaccagagcgctggCgagggacgcttcggaatgac	13	14	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192700900	T	T	192700900	3	4	6	1	0	0	0	0	1	0	0	0	14083	768	27	4	254	4	SDPR	2	192700900	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2846105	192700900	50498473	85	5733											
SF3B1	23451	broad.mit.edu	37	chr2	198269790	198269790	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatgacaatttaacaaacTgggacttacctttctcattg	5	9	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198269790	A	A	198269790	1	1	6	0	1	0	0	0	0	0	0	0	14262	1595	55	5		5	SF3B1	2	198269790	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	5568890	198269790	44929583	86	5734											
CLK1	1195	broad.mit.edu	37	chr2	201718134	201718134	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attttctgaatgaggtcaaaGagacgctcatgttcaacatc	8	8	4	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201718134	C	C	201718134	2	2	6	1	0	0	0	0	0	0	0	1	3568	929	33	4		4	CLK1	2	201718134	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	3448344	201718134	41481239	87	5735											
CDK15	65061	broad.mit.edu	37	chr2	202687730	202687730	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaacttttattataatgtGaaaagtatcatggaaatttt	5	2	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202687730	A	A	202687730	1	1	6	0	1	0	0	0	0	0	0	0	3161	1305	45	4		4	CDK15	2	202687730	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	969596	202687730	40511643	88	5736											
CDK15	65061	broad.mit.edu	37	chr2	202737000	202737000	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgccctctgtatgcttcccaGaatggttcccactgcctacg	8	16	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202737000	A	A	202737000	5	1	6	1	0	0	0	0	0	0	1	0	3161	956	33	4	894	4	CDK15	2	202737000	Splice_Site	SNP	G	TCGA-05-4389-01A-01D-1265-08	49270	202737000	40462373	89	5737											
FASTKD2	22868	broad.mit.edu	37	chr2	207634985	207634985	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatatctggaataaaaaaaTtgagatgaaaactaaactcc	5	5	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207634985	A	A	207634985	1	1	6	0	1	0	0	0	0	0	0	0	5743	1508	52	5		5	FASTKD2	2	207634985	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	4897985	207634985	35564388	90	5738											
MAP2	4133	broad.mit.edu	37	chr2	210557842	210557842	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattctcccatgccaagtccCtttcaagggggaagcttcac	9	13	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210557842	T	T	210557842	2	4	6	1	0	0	0	0	0	0	0	1	9327	668	24	4		4	MAP2	2	210557842	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2922857	210557842	32641531	91	5739											
MAP2	4133	broad.mit.edu	37	chr2	210570428	210570428	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctctcaacagttctatctCttcttcagcacggcggacca	6	15	6	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210570428	T	T	210570428	3	4	6	1	0	0	0	0	1	0	0	0	9327	913	32	4	4914	4	MAP2	2	210570428	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	12586	210570428	32628945	92	5740											
CCDC108	255101	broad.mit.edu	37	chr2	219896286	219896286	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgcagggatggtgggCggcagatcagcctgtggcag	19	9	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219896286	T	T	219896286	3	4	6	1	0	0	0	0	1	0	0	0	2769	768	27	4	5153	4	CCDC108	2	219896286	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	9325858	219896286	23303087	93	5741											
PTPRN	5798	broad.mit.edu	37	chr2	220164554	220164554	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaagtggggcaaccctctCagtcactttcttaaaacagg	10	10	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220164554	A	A	220164554	1	1	6	0	1	0	0	0	0	0	0	0	12915	841	29	3		3	PTPRN	2	220164554	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	268268	220164554	23034819	94	5742											
CHRNG	1146	broad.mit.edu	37	chr2	233404296	233404296	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaacagctgacaacgCtgtggtcagacagctggtgg	14	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233404296	A	A	233404296	1	1	6	0	1	0	0	0	0	0	0	0	3427	812	28	3		3	CHRNG	2	233404296	5'Flank	SNP	C	TCGA-05-4389-01A-01D-1265-08	13239742	233404296	9795077	95	5743											
UGT1A5	54579	broad.mit.edu	37	chr2	234663814	234663814	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctccctgtcctcggggttTttgtcggggtgccacttgag	13	12	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234663814	A	A	234663814	1	1	6	0	1	0	0	0	0	0	0	0	17074	1856	64	5		5	UGT1A5	2	234663814	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	1259518	234663814	8535559	96	5744											
COL6A3	1293	broad.mit.edu	37	chr2	238249550	238249550	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccacggactcagagggcGcgtgctgcacaactgccact	12	14	1	1	rs142851023	byFrequency	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238249550	A	A	238249550	3	1	6	1	0	0	0	0	1	0	0	0	3733	1087	38	4	1552	4	COL6A3	2	238249550	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	3585736	238249550	4949823	97	5745											
C2orf54	79919	broad.mit.edu	37	chr2	241826542	241826542	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagatgctctgcatggcaGagatccggtccttatcctgg	13	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241826542	A	A	241826542	3	1	6	1	0	0	0	0	1	0	0	0	2197	942	33	4	58	4	C2orf54	2	241826542	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	3576992	241826542	1372831	98	5746											
HDLBP	3069	broad.mit.edu	37	chr2	242192195	242192195	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatccaaccactgcaccaAagggaaaaggaaaagtggcc	9	11	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242192195	C	C	242192195	1	2	6	0	1	0	0	0	0	0	0	0	7092	29	1	5		5	HDLBP	2	242192195	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	365653	242192195	1007178	99	5747											
C3orf19	51244	broad.mit.edu	37	chr3	14712462	14712462	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccgggctgagagagatcctGagtttgccccgccgtcagat	13	12	1	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14712462	C	C	14712462	3	2	6	1	0	0	0	0	1	0	0	0	2234	1291	45	4	1207	4	C3orf19	3	14712462	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08		14712462	183309968	100	5748											
COLQ	8292	broad.mit.edu	37	chr3	15515524	15515524	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactttctgccccaacattcCaggaaatcctgggaaaccct	6	14	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15515524	T	T	15515524	3	4	6	1	0	0	0	0	1	0	0	0	3745	603	21	4	780	4	COLQ	3	15515524	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	803062	15515524	182506906	101	5749											
GADL1	339896	broad.mit.edu	37	chr3	30842577	30842577	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagtagcattttttaagaaGatccttcgaaaaagaaaaga	8	4	0	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30842577	T	T	30842577	3	4	6	1	0	0	0	0	1	0	0	0	6245	942	33	3	527	3	GADL1	3	30842577	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	15327053	30842577	167179853	102	5750											
CTNNB1	1499	broad.mit.edu	37	chr3	41266124	41266124	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatccattctggtgccactAccacagctccttctctgagt	7	14	2	1	rs121913412		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41266124	G	G	41266124	3	3	6	1	0	0	0	0	1	0	0	0	4050	391	14	5	127	5	CTNNB1	3	41266124	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	10423547	41266124	156756306	103	5751											
RBM6	10180	broad.mit.edu	37	chr3	50098365	50098365	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacttggtagcagccttaaGaattgttgtgttatctgttg	10	7	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50098365	C	C	50098365	1	2	6	0	1	0	0	0	0	0	0	0	13252	957	33	4		4	RBM6	3	50098365	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	8832241	50098365	147924065	104	5752											
ITIH4	3700	broad.mit.edu	37	chr3	52848161	52848161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacgcaggggaggggcgCtgcctgttcccaagcacagc	14	14	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52848161	A	A	52848161	1	1	6	0	1	0	0	0	0	0	0	0	7976	812	28	3		3	ITIH4	3	52848161	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2749796	52848161	145174269	105	5753											
SHQ1	55164	broad.mit.edu	37	chr3	72866403	72866403	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttctctccttcagtgacaCgggtttcatagcaatatgcc	7	12	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72866403	T	T	72866403	3	4	6	1	0	0	0	0	1	0	0	0	14405	536	19	4	893	4	SHQ1	3	72866403	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	20018242	72866403	125156027	106	5754											
FSTL1	11167	broad.mit.edu	37	chr3	120115919	120115919	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatctgttcctcaagactaTatagcattggcatttacaag	6	8	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120115919	C	C	120115919	1	2	6	0	1	0	0	0	0	0	0	0	6137	1421	49	5		5	FSTL1	3	120115919	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	47249516	120115919	77906511	107	5755											
STXBP5L	9515	broad.mit.edu	37	chr3	120760697	120760697	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgaatcagttaatgtaatCttttaaatactgtgattcta	6	4	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120760697	A	A	120760697	1	1	6	0	1	0	0	0	0	0	0	0	15475	928	32	3		3	STXBP5L	3	120760697	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	644778	120760697	77261733	108	5756											
MYLK	4638	broad.mit.edu	37	chr3	123366001	123366001	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggggcagaggtggctgggGtagggcagtaggggagacac	22	5	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123366001	A	A	123366001	1	1	6	0	1	0	0	0	0	0	0	0	10150	1276	44	4		4	MYLK	3	123366001	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2605304	123366001	74656429	109	5757											
KALRN	8997	broad.mit.edu	37	chr3	123947015	123947015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggggagaagtaggggtgGggaagttatgcttggggcag	22	2	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123947015	T	T	123947015	1	4	6	0	1	0	0	0	0	0	0	0	8045	1247	43	2		2	KALRN	3	123947015	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	581014	123947015	74075415	110	5758											
PODXL2	50512	broad.mit.edu	37	chr3	127358110	127358110	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgttcctgggtgcctgtgtGgctgggtctgatgagcctgg	18	9	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127358110	T	T	127358110	2	4	6	1	0	0	0	0	0	0	0	1	12276	1335	47	2		2	PODXL2	3	127358110	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	3411095	127358110	70664320	111	5759											
PODXL2	50512	broad.mit.edu	37	chr3	127381120	127381120	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatctggctgggaaaaactAcatcattctgaacatgacag	8	9	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127381120	G	G	127381120	3	3	6	1	0	0	0	0	1	0	0	0	12276	391	14	5	1186	5	PODXL2	3	127381120	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	23010	127381120	70641310	112	5760											
IFT122	55764	broad.mit.edu	37	chr3	129183488	129183488	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtacacagctggacaaatGatggtcagtacctggcgctg	13	9	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129183488	T	T	129183488	3	4	6	1	0	0	0	0	1	0	0	0	7625	1290	45	3	610	3	IFT122	3	129183488	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1802368	129183488	68838942	113	5761											
ACPL2	92370	broad.mit.edu	37	chr3	141006210	141006210	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcacatgtcaaaaggatcCggagcctctttcgaaagccc	9	12	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141006210	T	T	141006210	2	4	6	1	0	0	0	0	0	0	0	1	166	639	23	4		4	ACPL2	3	141006210	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	11822722	141006210	57016220	114	5762											
P2RY14	9934	broad.mit.edu	37	chr3	150932033	150932033	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atacagtacagcacaggaatGatctgctgagtgatcaggag	12	7	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150932033	T	T	150932033	2	4	6	1	0	0	0	0	0	0	0	1	11445	1280	45	3		3	P2RY14	3	150932033	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	9925823	150932033	47090397	115	5763											
EIF2B5	8893	broad.mit.edu	37	chr3	183855277	183855277	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcataatactctttgaagttGaagacgctggcaagaaccca	8	9	2	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183855277	C	C	183855277	1	2	6	0	1	0	0	0	0	0	0	0	5044	1305	45	4		4	EIF2B5	3	183855277	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	32923244	183855277	14167153	116	5764											
VPS8	23355	broad.mit.edu	37	chr3	184633343	184633343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtggtggctcacccctGtaatcccaacactttggccg	12	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184633343	T	T	184633343	1	4	6	0	1	0	0	0	0	0	0	0	17345	1392	48	3		3	VPS8	3	184633343	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	778066	184633343	13389087	117	5765											
MASP1	5648	broad.mit.edu	37	chr3	186968386	186968386	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaacggtaagcattgactCctttttcagagcagtgcttc	9	9	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186968386	A	A	186968386	1	1	6	0	1	0	0	0	0	0	0	0	9414	870	30	3		3	MASP1	3	186968386	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2335043	186968386	11054044	118	5766											
LEPREL1	55214	broad.mit.edu	37	chr3	189675648	189675648	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtacaaaaataaaaaggttCtcataagattaacaatttaa	4	4	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189675648	T	T	189675648	1	4	6	0	1	0	0	0	0	0	0	0	8802	928	32	4		4	LEPREL1	3	189675648	3'UTR	SNP	C	TCGA-05-4389-01A-01D-1265-08	2707262	189675648	8346782	119	5767											
LMLN	89782	broad.mit.edu	37	chr3	197703465	197703465	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttgatgtacaaatggactGaagacaatgtgcaacaaacc	8	8	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197703465	A	A	197703465	1	1	6	0	1	0	0	0	0	0	0	0	8921	1305	45	4		4	LMLN	3	197703465	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	8027817	197703465	318965	120	5768											
WHSC1	7468	broad.mit.edu	37	chr4	1976612	1976612	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtataatagacgctggccCcaaaggaaactactctcgat	8	12	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1976612	T	T	1976612	3	4	6	1	0	0	0	0	1	0	0	0	17489	623	22	4	3541	4	WHSC1	4	1976612	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08		1976612	189177664	121	5769											
NOP14	8602	broad.mit.edu	37	chr4	2944170	2944170	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcctgtggaagttcaccctCtaacagacgcacaccgattt	8	13	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2944170	G	G	2944170	1	3	6	0	1	0	0	0	0	0	0	0	10631	928	32	4		4	NOP14	4	2944170	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	967558	2944170	188210106	122	5770											
ZCCHC4	29063	broad.mit.edu	37	chr4	25370866	25370866	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgccacactggacttaAattcagctgcttccagaggt	9	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25370866	G	G	25370866	1	3	6	0	1	0	0	0	0	0	0	0	17716	29	1	5		5	ZCCHC4	4	25370866	3'UTR	SNP	A	TCGA-05-4389-01A-01D-1265-08	22426696	25370866	165783410	123	5771											
ATP8A1	10396	broad.mit.edu	37	chr4	42416783	42416783	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaattatcaactcggcagaGaccccagtgtgcccacagga	10	12	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42416783	A	A	42416783	1	1	6	0	1	0	0	0	0	0	0	0	1196	957	33	4		4	ATP8A1	4	42416783	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	17045917	42416783	148737493	124	5772											
LPHN3	23284	broad.mit.edu	37	chr4	62863911	62863911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttaatgtaatcttccttgGgattgctttatataaaatgt	7	5	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62863911	T	T	62863911	3	4	6	1	0	0	0	0	1	0	0	0	9004	1232	43	2	3189	2	LPHN3	4	62863911	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	20447128	62863911	128290365	125	5773											
UGT2A1	10941	broad.mit.edu	37	chr4	70462176	70462176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacttacacatttaagtaGgtaaaattaagatatatgtc	5	4	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70462176	T	T	70462176	1	4	6	0	1	0	0	0	0	0	0	0	17079	1015	35	2		2	UGT2A1	4	70462176	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	7598265	70462176	120692100	126	5774											
NPFFR2	10886	broad.mit.edu	37	chr4	73012878	73012878	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aataaaaccagtccagtctaCtggtgccgggaagactggcc	11	11	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73012878	G	G	73012878	4	3	6	1	0	0	0	0	0	1	0	0	10673	576	20	4	938	4	NPFFR2	4	73012878	Nonsense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2550702	73012878	118141398	127	5775											
SCARB2	950	broad.mit.edu	37	chr4	77116918	77116918	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcccctctgaggatctcctCtggattggtgacattgaaga	10	11	3	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77116918	G	G	77116918	3	3	6	1	0	0	0	0	1	0	0	0	13994	922	32	4	1263	4	SCARB2	4	77116918	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	4104040	77116918	114037358	128	5776											
CNOT6L	246175	broad.mit.edu	37	chr4	78652569	78652569	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatagttctttgtggacctcTaataccacagcgacaccaat	6	11	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78652569	G	G	78652569	3	3	6	1	0	0	0	0	1	0	0	0	3655	1519	53	5	687	5	CNOT6L	4	78652569	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	1535651	78652569	112501707	129	5777											
GK2	2712	broad.mit.edu	37	chr4	80329119	80329119	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgttggatatatcaataTtcagttcgtcaagtttctca	6	6	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80329119	C	C	80329119	3	2	6	1	0	0	0	0	1	0	0	0	6485	1493	52	5	1429	5	GK2	4	80329119	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	1676550	80329119	110825157	130	5778											
WDFY3	23001	broad.mit.edu	37	chr4	85630298	85630298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttaacagatttcagaaCaatgaaatacttttttttct	3	6	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85630298	A	A	85630298	1	1	6	0	1	0	0	0	0	0	0	0	17397	493	17	3		3	WDFY3	4	85630298	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	5301179	85630298	105523978	131	5779											
WDFY3	23001	broad.mit.edu	37	chr4	85716110	85716111	+	Missense_Mutation	DNP	CC	AG	AG													tgtaggagcattatgaggggCcaaactgggcaaaaaaagac							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	85716111	AG	AG	85716110	3	1	6	1	0	0	0	0	1	0	0	0	17397	739	26	3	7586	3	WDFY3	4	85716110	Missense_Mutation	DNP	CC	TCGA-05-4389-01A-01D-1265-08	85812	85716110	105438166	132	5780											
HERC6	55008	broad.mit.edu	37	chr4	89334306	89334306	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagaagctttatcagttttCctcctgctcccagaatgtcc	6	13	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89334306	T	T	89334306	2	4	6	1	0	0	0	0	0	0	0	1	7129	854	30	4		4	HERC6	4	89334306	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	3618196	89334306	101819970	133	5781											
GRID2	2895	broad.mit.edu	37	chr4	93225765	93225765	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtttgaaaaaaaaaaaaTtggaagaaaatccatcctcc	5	7	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93225765	A	A	93225765	1	1	6	1	0	0	0	0	0	0	0	0	6838	1508	52	5		5	GRID2	4	93225765	Translation_Start_Site	SNP	T	TCGA-05-4389-01A-01D-1265-08	3891459	93225765	97928511	134	5782											
MTTP	4547	broad.mit.edu	37	chr4	100518415	100518415	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttgtgtggggttgtctgTcagaaacatttctggattgt	12	6	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100518415	C	C	100518415	1	2	6	0	1	0	0	0	0	0	0	0	10058	1682	58	5		5	MTTP	4	100518415	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	7292650	100518415	90635861	135	5783											
AGXT2L1	64850	broad.mit.edu	37	chr4	109671950	109671950	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggctgagagagcatccagGagtcctgggttggcaggcac	16	9	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109671950	A	A	109671950	1	1	6	0	1	0	0	0	0	0	0	0	406	1189	41	4		4	AGXT2L1	4	109671950	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	9153535	109671950	81482326	136	5784											
ANK2	287	broad.mit.edu	37	chr4	114278661	114278661	+	Frame_Shift_Del	DEL	A	-	-													cttctgaagtgtattctgttAccatcacatcccctgttgaa							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114278661	-	-	114278661	7	5	6	1	0	1	0	1	0	0	0	0	621	391	14	0	9102	0	ANK2	4	114278661	Frame_Shift_Del	DEL	A	TCGA-05-4389-01A-01D-1265-08	4606711	114278661	76875615	137	5785											
FAT4	79633	broad.mit.edu	37	chr4	126240611	126240611	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaacctgtgaattctcgattCtttaaagtacaagcttctga	7	8	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126240611	T	T	126240611	2	4	6	1	0	0	0	0	0	0	0	1	5749	912	32	4		4	FAT4	4	126240611	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	11961950	126240611	64913665	138	5786											
SCLT1	132320	broad.mit.edu	37	chr4	129925026	129925026	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcatcttttaattcactgTgcaacctttgaaacaaatag	5	9	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129925026	C	C	129925026	3	2	6	1	0	0	0	0	1	0	0	0	14019	1696	59	5	1834	5	SCLT1	4	129925026	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	3684415	129925026	61229250	139	5787											
NAA15	80155	broad.mit.edu	37	chr4	140270690	140270690	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattgcaagagagaaatcctGaaaactgggcctattacaaa	9	7	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140270690	A	A	140270690	3	1	6	1	0	0	0	0	1	0	0	0	10212	1291	45	4	792	4	NAA15	4	140270690	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	10345664	140270690	50883586	140	5788											
INPP4B	8821	broad.mit.edu	37	chr4	143081533	143081533	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actcttcctcatcatagtctGaatgatgtggtatggagtcc	9	9	4	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143081533	A	A	143081533	3	1	6	1	0	0	0	0	1	0	0	0	7823	1294	45	4	1273	4	INPP4B	4	143081533	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2810843	143081533	48072743	141	5789											
RPS3A	6189	broad.mit.edu	37	chr4	152021755	152021755	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaccagtaagtagcttattCttggtttgtattttccttaa	7	6	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152021755	G	G	152021755	1	3	6	0	1	0	0	0	0	0	0	0	13755	928	32	4		4	RPS3A	4	152021755	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	8940222	152021755	39132521	142	5790											
MARCH1	55016	broad.mit.edu	37	chr4	164534638	164534638	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catatttaaaaaattacaacAaacgtggctgctggtcatgt	7	7	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164534638	T	T	164534638	1	4	6	0	1	0	0	0	0	0	0	0	9390	130	5	5		5	MARCH1	4	164534638	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	12512883	164534638	26619638	143	5791											
AGA	175	broad.mit.edu	37	chr4	178358704	178358704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttaagttttatttcttaCaaagggtatttttagaaatt	6	2	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178358704	A	A	178358704	1	1	6	0	1	0	0	0	0	0	0	0	365	493	17	3		3	AGA	4	178358704	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	13824066	178358704	12795572	144	5792											
FAT1	2195	broad.mit.edu	37	chr4	187627769	187627769	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagagccatctctaatggaGtatcggatctccccatctct	7	14	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187627769	A	A	187627769	2	1	6	1	0	0	0	0	0	0	0	1	5746	1024	36	4		4	FAT1	4	187627769	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	9269065	187627769	3526507	145	5793											
CEP72	55722	broad.mit.edu	37	chr5	639206	639206	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgtttccatcacagccGtctcccgggtcacactcggc	9	16	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	639206	A	A	639206	2	1	6	1	0	0	0	0	0	0	0	1	3290	1132	40	4		4	CEP72	5	639206	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08		639206	180276054	146	5794											
MED10	84246	broad.mit.edu	37	chr5	6378737	6378737	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcgagctcttgggggcggAgcctcgttatcgggacgggc	20	10	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6378737	G	G	6378737	1	3	6	0	1	0	0	0	0	0	0	0	9519	319	11	5		5	MED10	5	6378737	5'Flank	SNP	A	TCGA-05-4389-01A-01D-1265-08	5739531	6378737	174536523	147	5795											
CTNND2	1501	broad.mit.edu	37	chr5	11564973	11564973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgttccaattccaccaCcgggttggaaagaagagaaa	10	8	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11564973	A	A	11564973	1	1	6	0	1	0	0	0	0	0	0	0	4054	522	18	3		3	CTNND2	5	11564973	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	5186236	11564973	169350287	148	5796											
FBXL7	23194	broad.mit.edu	37	chr5	15937008	15937008	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaccacggtgtggagtacCtcgccaagaactgcaccaaa	11	13	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15937008	T	T	15937008	3	4	6	1	0	0	0	0	1	0	0	0	5781	681	24	4	1203	4	FBXL7	5	15937008	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	4372035	15937008	164978252	149	5797											
CDH10	1008	broad.mit.edu	37	chr5	24537720	24537720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaataataaaaagagtacCagctccatctccagataaga	5	9	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24537720	A	A	24537720	3	1	6	1	0	0	0	0	1	0	0	0	3126	594	21	2	2111	2	CDH10	5	24537720	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	8600712	24537720	156377540	150	5798											
CDH9	1007	broad.mit.edu	37	chr5	26906156	26906156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctcccatctggccaccCatgtctttggcctgtataac	8	15	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906156	A	A	26906156	3	1	6	1	0	0	0	0	1	0	0	0	3147	594	21	2	1678	2	CDH9	5	26906156	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2368436	26906156	154009104	151	5799											
NPR3	4883	broad.mit.edu	37	chr5	32780752	32780752	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaaaaatcctgccaatTcattttcttgtttttgttgg	6	6	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32780752	A	A	32780752	1	1	6	0	1	0	0	0	0	0	0	0	10691	1798	62	5		5	NPR3	5	32780752	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	5874596	32780752	148134508	152	5800											
RAI14	26064	broad.mit.edu	37	chr5	34824141	34824141	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaactctgtctctatcacaGaacatttgcaagtgataacc	6	10	3	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34824141	C	C	34824141	3	2	6	1	0	0	0	0	1	0	0	0	13116	943	33	4	2313	4	RAI14	5	34824141	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2043389	34824141	146091119	153	5801											
PRLR	5618	broad.mit.edu	37	chr5	35065370	35065370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agccacgtttttagcatgtgGatctggcaccaacaccagga	10	11	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35065370	T	T	35065370	3	4	6	1	0	0	0	0	1	0	0	0	12637	1174	41	3	182	3	PRLR	5	35065370	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	241229	35065370	145849890	154	5802											
PRKAA1	5562	broad.mit.edu	37	chr5	40764982	40764982	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggtgtttggatttctgtgGatttaattcatcaagggtat	11	3	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40764982	C	C	40764982	3	2	6	1	0	0	0	0	1	0	0	0	12599	1174	41	4	511	4	PRKAA1	5	40764982	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	5699612	40764982	140150278	155	5803											
RAD17	5884	broad.mit.edu	37	chr5	68670478	68670478	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaacttgctgtgcataaaaaGaaaattgaagaagtcgaaac	9	5	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68670478	A	A	68670478	2	1	6	1	0	0	0	0	0	0	0	1	13087	933	33	4		4	RAD17	5	68670478	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	27905496	68670478	112244782	156	5804											
FAM172A	83989	broad.mit.edu	37	chr5	93159718	93159718	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaactattttcaaacatcaTaaaattatttactcaaaata	0	6	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93159718	A	A	93159718	1	1	6	0	1	0	0	0	0	0	0	0	5537	1421	49	5		5	FAM172A	5	93159718	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	24489240	93159718	87755542	157	5805											
FER	2241	broad.mit.edu	37	chr5	108133869	108133869	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcagtgtggaggataaCcagtgccttacaaaatgggg	14	6	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108133869	T	T	108133869	1	4	6	0	1	0	0	0	0	0	0	0	5870	522	18	4		4	FER	5	108133869	5'UTR	SNP	C	TCGA-05-4389-01A-01D-1265-08	14974151	108133869	72781391	158	5806											
SHROOM1	134549	broad.mit.edu	37	chr5	132160138	132160138	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagaaaagacactgaatcaGaaaaagctccagccacaaac	7	11	1	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132160138	A	A	132160138	1	1	6	0	1	0	0	0	0	0	0	0	14406	957	33	4		4	SHROOM1	5	132160138	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	24026269	132160138	48755122	159	5807											
PCDHB12	56124	broad.mit.edu	37	chr5	140589829	140589829	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaatgacaacgcccccgcCttcacccaaacttcctacgc	5	19	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140589829	T	T	140589829	2	4	6	1	0	0	0	0	0	0	0	1	11631	668	24	4		4	PCDHB12	5	140589829	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	8429691	140589829	40325431	160	5808											
PCDHGB5	56101	broad.mit.edu	37	chr5	140777700	140777700	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagagcaagagggatgggGagcggcgccggggagctggg	24	6	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140777700	T	T	140777700	2	4	6	1	0	0	0	0	0	0	0	1	11660	1161	41	3		3	PCDHGB5	5	140777700	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	187871	140777700	40137560	161	5809											
ANXA6	309	broad.mit.edu	37	chr5	150502606	150502606	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacatgcctcagaagaagGcctgtggctctcggctttcc	11	14	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150502606	A	A	150502606	1	1	6	0	1	0	0	0	0	0	0	0	722	1218	42	4		4	ANXA6	5	150502606	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	9724906	150502606	30412654	162	5810											
GABRB2	2561	broad.mit.edu	37	chr5	160972192	160972192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccttcctgtccccaaaCgaaagtttgcaaagaagtag	7	11	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160972192	T	T	160972192	1	4	6	0	1	0	0	0	0	0	0	0	6227	551	19	4		4	GABRB2	5	160972192	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	10469586	160972192	19943068	163	5811											
HK3	3101	broad.mit.edu	37	chr5	176323031	176323031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcttgaaggccttagaCaagcatgaaacaggaaccca	9	11	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176323031	A	A	176323031	1	1	6	0	1	0	0	0	0	0	0	0	7259	493	17	3		3	HK3	5	176323031	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	15350839	176323031	4592229	164	5812											
F13A1	2162	broad.mit.edu	37	chr6	6266700	6266700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgatcctcccatcttggcCtcccaaagagctgggagtat	10	13	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6266700	A	A	6266700	1	1	6	0	1	0	0	0	0	0	0	0	5383	696	24	2		2	F13A1	6	6266700	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08		6266700	164848367	165	5813											
GPLD1	2822	broad.mit.edu	37	chr6	24475328	24475328	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactcccataaagtcattcCccataaagggatgtactcac	5	13	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24475328	T	T	24475328	1	4	6	0	1	0	0	0	0	0	0	0	6679	638	22	4		4	GPLD1	6	24475328	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	18208628	24475328	146639739	166	5814											
SLC17A2	10246	broad.mit.edu	37	chr6	25917311	25917311	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacagcagacacagccagtGctacctgggaagaagggata	13	9	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25917311	A	A	25917311	2	1	6	1	0	0	0	0	0	0	0	1	14530	1310	46	4		4	SLC17A2	6	25917311	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1441983	25917311	145197756	167	5815											
OR2J3	442186	broad.mit.edu	37	chr6	29080183	29080183	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accttctgggtacctctgtgTggacaccgccaagtagatca	10	12	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29080183	A	A	29080183	4	1	6	1	0	0	0	0	0	1	0	0	11098	1702	59	5	518	5	OR2J3	6	29080183	Nonsense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	3162872	29080183	142034884	168	5816											
PBX2	5089	broad.mit.edu	37	chr6	32156269	32156270	+	Missense_Mutation	DNP	CG	GA	GA													gctcctcctcctgggagctcCgaatgctgaggcctagcatg							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	32156270	GA	GA	32156269	3	3	6	1	0	0	0	0	1	0	0	0	11587	652	23	4	1012	4	PBX2	6	32156269	Missense_Mutation	DNP	CG	TCGA-05-4389-01A-01D-1265-08	3076086	32156269	138958798	169	5817											
KIF6	221458	broad.mit.edu	37	chr6	39512386	39512386	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctttctatattcttcttcTtttaatggttcttgacaatc	4	8	5	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39512386	C	C	39512386	2	2	6	1	0	0	0	0	0	0	0	1	8378	1606	56	5		5	KIF6	6	39512386	Silent	SNP	T	TCGA-05-4389-01A-01D-1265-08	7356117	39512386	131602681	170	5818											
FRS3	10817	broad.mit.edu	37	chr6	41743230	41743230	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagccatagcgccgcaagcaGagataaggccagcggacggc	14	12	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41743230	T	T	41743230	2	4	6	1	0	0	0	0	0	0	0	1	6122	929	33	3		3	FRS3	6	41743230	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	2230844	41743230	129371837	171	5819											
TJAP1	93643	broad.mit.edu	37	chr6	43471447	43471447	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccacaagtttgccgatgtGagtagaactcaccccctccc	7	15	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43471447	T	T	43471447	1	4	6	0	1	0	0	0	0	0	0	0	16051	1305	45	3		3	TJAP1	6	43471447	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1728217	43471447	127643620	172	5820											
MAD2L1BP	9587	broad.mit.edu	37	chr6	43604479	43604479	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaagaaatcttcaaagcctGagagaataagcagcttccag	8	9	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43604479	C	C	43604479	1	2	6	0	1	0	0	0	0	0	0	0	9237	1305	45	4		4	MAD2L1BP	6	43604479	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	133032	43604479	127510588	173	5821											
TCTE1	202500	broad.mit.edu	37	chr6	44253686	44253686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggtggggggaaggctGggagcagacagtaccttgag	21	5	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44253686	A	A	44253686	1	1	6	0	1	0	0	0	0	0	0	0	15839	1363	47	4		4	TCTE1	6	44253686	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	649207	44253686	126861381	174	5822											
AARS2	57505	broad.mit.edu	37	chr6	44274243	44274243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccagtacctgggctgagttCctttgcagttctggataagc	11	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44274243	A	A	44274243	3	1	6	1	0	0	0	0	1	0	0	0	20	854	30	3	1841	3	AARS2	6	44274243	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	20557	44274243	126840824	175	5823											
MEP1A	4224	broad.mit.edu	37	chr6	46777134	46777134	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtccaaataatgctcattGatatttttactgatttctgc	6	7	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46777134	C	C	46777134	1	2	6	0	1	0	0	0	0	0	0	0	9568	1305	45	4		4	MEP1A	6	46777134	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2502891	46777134	124337933	176	5824											
OPN5	221391	broad.mit.edu	37	chr6	47776233	47776233	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttagggttaaagctcaTcgcctaggagtagtgtagga	12	7	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47776233	A	A	47776233	1	1	6	0	1	0	0	0	0	0	0	0	10977	1450	50	5		5	OPN5	6	47776233	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	999099	47776233	123338834	177	5825											
PGK2	5232	broad.mit.edu	37	chr6	49753774	49753774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggcacagcaagtagcaGtgtctccaccccctataaca	7	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49753774	T	T	49753774	3	4	6	1	0	0	0	0	1	0	0	0	11886	1029	36	3	130	3	PGK2	6	49753774	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1977541	49753774	121361293	178	5826											
ICK	22858	broad.mit.edu	37	chr6	52883108	52883108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggctttggcccactggCctttgttttgtatcattacc	9	10	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52883108	A	A	52883108	1	1	6	0	1	0	0	0	0	0	0	0	7554	754	26	3		3	ICK	6	52883108	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	3129334	52883108	118231959	179	5827											
ME1	4199	broad.mit.edu	37	chr6	84025049	84025049	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggaagaaactgcctccatGaattcgtccaaaaaatcatc	6	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84025049	A	A	84025049	2	1	6	1	0	0	0	0	0	0	0	1	9510	1281	45	4		4	ME1	6	84025049	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	31141941	84025049	87090018	180	5828											
MDN1	23195	broad.mit.edu	37	chr6	90438775	90438775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttcttcagtttggtagCtcttaagagcctctgtgcat	11	9	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90438775	A	A	90438775	3	1	6	1	0	0	0	0	1	0	0	0	9508	797	28	3	11834	3	MDN1	6	90438775	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	6413726	90438775	80676292	181	5829											
MDN1	23195	broad.mit.edu	37	chr6	90503650	90503650	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggccttctccaagtccTgcaactgggcctcttctaat	7	15	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90503650	A	A	90503650	3	1	6	1	0	0	0	0	1	0	0	0	9508	1580	55	5	16496	5	MDN1	6	90503650	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	64875	90503650	80611417	182	5830											
BEND3	57673	broad.mit.edu	37	chr6	107420645	107420645	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggaagctatgtgtcctccTaatcttgtctgcagacactc	9	11	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107420645	A	A	107420645	1	1	6	0	1	0	0	0	0	0	0	0	1404	1537	53	5		5	BEND3	6	107420645	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	16916995	107420645	63694422	183	5831											
SCML4	256380	broad.mit.edu	37	chr6	108041921	108041921	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattaccacatctgtttcctTcaagagaggtcgtgtttctc	7	11	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108041921	A	A	108041921	3	1	6	1	0	0	0	0	1	0	0	0	14024	1783	62	5	297	5	SCML4	6	108041921	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	621276	108041921	63073146	184	5832											
KIAA1919	91749	broad.mit.edu	37	chr6	111583650	111583652	+	Intron	DEL	CTT	-	-													taagtaaatgctaattttagCttctttatgactgtcaagtg							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111583652	-	-	111583650	6	5	6	0	1	1	0	1	0	0	0	0	8332	812	28	0		0	KIAA1919	6	111583650	Intron	DEL	CTT	TCGA-05-4389-01A-01D-1265-08	3541729	111583650	59531417	185	5833											
LAMA4	3910	broad.mit.edu	37	chr6	112437004	112437004	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataattctgtgaaataaatcTgcttcagatctagaatccaa	5	7	4	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112437004	A	A	112437004	1	1	6	0	1	0	0	0	0	0	0	0	8680	1595	55	5		5	LAMA4	6	112437004	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	853354	112437004	58678063	186	5834											
LAMA4	3910	broad.mit.edu	37	chr6	112522902	112522902	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaactaaaattggaaGcaaatattggaagtcaattc	7	6	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112522902	A	A	112522902	1	1	6	0	1	0	0	0	0	0	0	0	8680	986	34	4		4	LAMA4	6	112522902	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	85898	112522902	58592165	187	5835											
LAMA2	3908	broad.mit.edu	37	chr6	129601110	129601110	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accagcctgtactcttttgtCagagcagtagtggagagaga	12	8	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129601110	A	A	129601110	1	1	6	0	1	0	0	0	0	0	0	0	8678	841	29	3		3	LAMA2	6	129601110	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	17078208	129601110	41513957	188	5836											
LAMA2	3908	broad.mit.edu	37	chr6	129762061	129762061	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagagctccaccagaacctCgatggcctgaagaagaatta	9	11	0	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129762061	T	T	129762061	2	4	6	1	0	0	0	0	0	0	0	1	8678	871	31	4		4	LAMA2	6	129762061	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	160951	129762061	41353006	189	5837											
AHI1	54806	broad.mit.edu	37	chr6	135763829	135763829	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcatttagtgagaagagGtgtttgtttgggatacggca	14	5	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135763829	C	C	135763829	3	2	6	1	0	0	0	0	1	0	0	0	413	1252	44	4	1908	4	AHI1	6	135763829	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	6001768	135763829	35351238	190	5838											
NUP43	348995	broad.mit.edu	37	chr6	150064778	150064778	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactaaagttctttacctggTtatttggatggtgaaggaaa	10	4	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150064778	A	A	150064778	3	1	6	1	0	0	0	0	1	0	0	0	10860	1725	60	5	849	5	NUP43	6	150064778	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	14300949	150064778	21050289	191	5839											
MTHFD1L	25902	broad.mit.edu	37	chr6	151420809	151420809	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagggttcgtagaagattcAgggtccagatcttgatgccc	12	9	2	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151420809	G	G	151420809	1	3	6	0	1	0	0	0	0	0	0	0	10022	203	7	5		5	MTHFD1L	6	151420809	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	1356031	151420809	19694258	192	5840											
TULP4	56995	broad.mit.edu	37	chr6	158924616	158924616	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccacttgggcacagaggtGatggtagagactgcagacaa	14	8	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158924616	A	A	158924616	2	1	6	1	0	0	0	0	0	0	0	1	16902	1277	45	4		4	TULP4	6	158924616	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	7503807	158924616	12190451	193	5841											
PDGFA	5154	broad.mit.edu	37	chr7	552037	552037	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccgcttctcgggcacatgCttagtggcatggaccccgtg	14	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	552037	G	G	552037	3	3	6	1	0	0	0	0	1	0	0	0	11751	796	28	4	450	4	PDGFA	7	552037	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08		552037	158586626	194	5842											
IQCE	23288	broad.mit.edu	37	chr7	2632920	2632920	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtcacccagcccgggaCtaacctcttggtgctgagca	10	14	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2632920	T	T	2632920	1	4	6	0	1	0	0	0	0	0	0	0	7876	580	20	4		4	IQCE	7	2632920	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2080883	2632920	156505743	195	5843											
RAPGEF5	9771	broad.mit.edu	37	chr7	22259492	22259492	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaaaggcttacgtgttcaGacttctcctgttcttttttg	8	9	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22259492	A	A	22259492	3	1	6	1	0	0	0	0	1	0	0	0	13155	942	33	4	1734	4	RAPGEF5	7	22259492	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	19626572	22259492	136879171	196	5844											
GARS	2617	broad.mit.edu	37	chr7	30662100	30662100	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taagatatcagatgtttactCttccatgggctccagtcagt	8	9	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30662100	G	G	30662100	1	3	6	0	1	0	0	0	0	0	0	0	6304	928	32	4		4	GARS	7	30662100	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	8402608	30662100	128476563	197	5845											
AQP1	358	broad.mit.edu	37	chr7	30963178	30963178	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggtgtggaccagcggCcaggtggaggagtatgacct	18	7	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30963178	T	T	30963178	2	4	6	1	0	0	0	0	0	0	0	1	823	726	26	4		4	AQP1	7	30963178	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	301078	30963178	128175485	198	5846											
KIAA0895	23366	broad.mit.edu	37	chr7	36366473	36366473	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggaaatgagggacccTcatgttttcggtaactgcca	11	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36366473	C	C	36366473	3	2	6	1	0	0	0	0	1	0	0	0	8267	1550	54	5	107	5	KIAA0895	7	36366473	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	5403295	36366473	122772190	199	5847											
SEC61G	23480	broad.mit.edu	37	chr7	54823477	54823477	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataaagtttacttacacaatGatgttattaataggaatatg	6	3	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54823477	A	A	54823477	2	1	6	1	0	0	0	0	0	0	0	1	14116	1280	45	4		4	SEC61G	7	54823477	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	18457004	54823477	104315186	200	5848											
ZNF479	90827	broad.mit.edu	37	chr7	57188723	57188723	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttgtgcacctcatattcAcccacacttttacagcattt	3	15	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188723	T	T	57188723	2	4	6	1	0	0	0	0	0	0	0	1	18060	146	6	5		5	ZNF479	7	57188723	Silent	SNP	A	TCGA-05-4389-01A-01D-1265-08	2365246	57188723	101949940	201	5849											
ZNF92	168374	broad.mit.edu	37	chr7	64852924	64852924	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgatgttagagaactacaGaaacctggtcttccttggtg	11	7	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64852924	A	A	64852924	3	1	6	1	0	0	0	0	1	0	0	0	18330	942	33	4	119	4	ZNF92	7	64852924	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	7664201	64852924	94285739	202	5850											
TMEM120A	83862	broad.mit.edu	37	chr7	75621696	75621696	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggggcggtgcccagggtctCacagcgccagccctcccacc	13	18	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75621696	G	G	75621696	1	3	6	0	1	0	0	0	0	0	0	0	16156	841	29	4		4	TMEM120A	7	75621696	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	10768772	75621696	83516967	203	5851											
PHTF2	57157	broad.mit.edu	37	chr7	77538221	77538221	+	Frame_Shift_Del	DEL	T	-	-													gggaactgtgcattgccagaTtgtttccacaagaacaccca							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77538221	-	-	77538221	7	5	6	1	0	1	0	1	0	0	0	0	11958	1493	52	0	477	0	PHTF2	7	77538221	Frame_Shift_Del	DEL	T	TCGA-05-4389-01A-01D-1265-08	1916525	77538221	81600442	204	5852											
C7orf63	79846	broad.mit.edu	37	chr7	89927177	89927177	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataacaatcataagacaaaaGacaaatatgtctattaaagg	5	5	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89927177	C	C	89927177	1	2	6	0	1	0	0	0	0	0	0	0	2434	957	33	4		4	C7orf63	7	89927177	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	12388956	89927177	69211486	205	5853											
AKAP9	10142	broad.mit.edu	37	chr7	91737903	91737903	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctaacagattatatcaCtcggctagaggcactgcaaa	8	11	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91737903	T	T	91737903	3	4	6	1	0	0	0	0	1	0	0	0	459	565	20	4	11836	4	AKAP9	7	91737903	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1810726	91737903	67400760	206	5854											
ALKBH4	54784	broad.mit.edu	37	chr7	102100302	102100302	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacagcgagacccggtcccTacgaaaagttaaaacaggcc	9	13	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102100302	C	C	102100302	1	2	6	0	1	0	0	0	0	0	0	0	529	1537	53	5		5	ALKBH4	7	102100302	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	10362399	102100302	57038361	207	5855											
PIK3CG	5294	broad.mit.edu	37	chr7	106508499	106508499	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggctatgacgtcactgacGtcagcaacgtgcacgacgat	11	11	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106508499	A	A	106508499	3	1	6	1	0	0	0	0	1	0	0	0	12011	1145	40	4	495	4	PIK3CG	7	106508499	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	4408197	106508499	52630164	208	5856											
DOCK4	9732	broad.mit.edu	37	chr7	111617307	111617307	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgactgctggcctgcaccGgggtgtctttcttccgatgt	14	11	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111617307	A	A	111617307	3	1	6	1	0	0	0	0	1	0	0	0	4729	1116	39	4	5499	4	DOCK4	7	111617307	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	5108808	111617307	47521356	209	5857											
DOCK4	9732	broad.mit.edu	37	chr7	111634226	111634226	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatggttccccagtctctTaatgttgatgtcatttctgt	7	10	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111634226	C	C	111634226	2	2	6	1	0	0	0	0	0	0	0	1	4729	1751	61	5		5	DOCK4	7	111634226	Silent	SNP	T	TCGA-05-4389-01A-01D-1265-08	16919	111634226	47504437	210	5858											
KCND2	3751	broad.mit.edu	37	chr7	119915637	119915637	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgcatcctggggtacacactGaagagttgtgcctcagaatt	11	10	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119915637	A	A	119915637	2	1	6	1	0	0	0	0	0	0	0	1	8089	1277	45	4		4	KCND2	7	119915637	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	8281411	119915637	39223026	211	5859											
AASS	10157	broad.mit.edu	37	chr7	121718105	121718105	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataagtaaaaataccactatCattacaactcaaatattgtc	2	8	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121718105	A	A	121718105	1	1	6	0	1	0	0	0	0	0	0	0	24	841	29	3		3	AASS	7	121718105	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	1802468	121718105	37420558	212	5860											
GRM8	2918	broad.mit.edu	37	chr7	126173585	126173585	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtaactaagttcgcgtccTgaagccctcacgataggtgt	10	11	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126173585	C	C	126173585	2	2	6	1	0	0	0	0	0	0	0	1	6869	1567	55	5		5	GRM8	7	126173585	Silent	SNP	T	TCGA-05-4389-01A-01D-1265-08	4455480	126173585	32965078	213	5861											
CCDC136	64753	broad.mit.edu	37	chr7	128457828	128457828	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtcatcccctacccccaAtccccccatcttctccttgc	3	22	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128457828	G	G	128457828	3	3	6	1	0	0	0	0	1	0	0	0	2796	101	4	5	3446	5	CCDC136	7	128457828	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	2284243	128457828	30680835	214	5862											
KLHDC10	23008	broad.mit.edu	37	chr7	129736765	129736765	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataattgtggtaacaggtaaGaagaaaatacgatgggaccc	11	5	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129736765	C	C	129736765	3	2	6	1	0	0	0	0	1	0	0	0	8426	933	33	4	177	4	KLHDC10	7	129736765	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1278937	129736765	29401898	215	5863											
COPG2	26958	broad.mit.edu	37	chr7	130294947	130294948	+	Intron	INS	-	T	T													aagtcagcttctactgactaINStttttttccctcttgtttat							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130294948	T	T	130294947	6	5	6	0	1	1	1	0	0	0	0	0	3764	464	16	0		0	COPG2	7	130294947	Intron	INS	-	TCGA-05-4389-01A-01D-1265-08	558182	130294947	28843716	216	5864											
DGKI	9162	broad.mit.edu	37	chr7	137076124	137076124	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaagagagagagagaTagacacaagcgctagtcgtg	12	5	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137076124	A	A	137076124	1	1	6	0	1	0	0	0	0	0	0	0	4511	1421	49	5		5	DGKI	7	137076124	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	6781177	137076124	22062539	217	5865											
DGKI	9162	broad.mit.edu	37	chr7	137128894	137128894	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatattttatatgataattaTaatgataatcaagaataatt	3	1	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137128894	C	C	137128894	1	2	6	0	1	0	0	0	0	0	0	0	4511	1421	49	5		5	DGKI	7	137128894	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	52770	137128894	22009769	218	5866											
BRAF	673	broad.mit.edu	37	chr7	140481402	140481402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttcccttgtagactgttCcaaatgatccagatccaatt	5	11	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481402	A	A	140481402	3	1	6	1	0	0	0	0	1	0	0	0	1505	855	30	3	926	3	BRAF	7	140481402	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	3352508	140481402	18657261	219	5867											
MGAM	8972	broad.mit.edu	37	chr7	141765661	141765661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcttctacctccactgttTtatgtcacttgaaagacagt	7	10	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141765661	A	A	141765661	1	1	6	0	1	0	0	0	0	0	0	0	9634	1856	64	5		5	MGAM	7	141765661	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	1284259	141765661	17373002	220	5868											
TRPV5	56302	broad.mit.edu	37	chr7	142626486	142626486	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctctgccttgcccgcctctCcagccaaccatccttcaagc	5	21	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142626486	G	G	142626486	1	3	6	0	1	0	0	0	0	0	0	0	16724	870	30	4		4	TRPV5	7	142626486	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	860825	142626486	16512177	221	5869											
TPK1	27010	broad.mit.edu	37	chr7	144345875	144345875	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccatatgagaaagatcttGaacaaaaaaatgtttataat	5	4	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144345875	A	A	144345875	1	1	6	0	1	0	0	0	0	0	0	0	16528	1305	45	4		4	TPK1	7	144345875	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1719389	144345875	14792788	222	5870											
CNTNAP2	26047	broad.mit.edu	37	chr7	146825955	146825955	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attttcacccgcaaaatattGgtctataaaatatcaagtaa	4	7	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146825955	C	C	146825955	1	2	6	0	1	0	0	0	0	0	0	0	3679	1363	47	4		4	CNTNAP2	7	146825955	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2480080	146825955	12312708	223	5871											
ESYT2	57488	broad.mit.edu	37	chr7	158555808	158555808	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccttgtctgggtcttcatCaaagagctcaatctctaatt	6	10	6	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158555808	T	T	158555808	3	4	6	1	0	0	0	0	1	0	0	0	5307	826	29	4	1439	4	ESYT2	7	158555808	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	11729853	158555808	582855	224	5872											
PRSS55	203074	broad.mit.edu	37	chr8	10390337	10390337	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggctgggggacacagggccGagggcacagtcagctgcatc	18	11	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10390337	A	A	10390337	1	1	6	0	1	0	0	0	0	0	0	0	12740	1073	37	4		4	PRSS55	8	10390337	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08		10390337	135973685	225	5873											
LOXL2	4017	broad.mit.edu	37	chr8	23191185	23191185	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggcatcatgacgcctacCccgattccttctgcaacgag	9	15	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23191185	T	T	23191185	1	4	6	0	1	0	0	0	0	0	0	0	8987	638	22	4		4	LOXL2	8	23191185	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	12800848	23191185	123172837	226	5874											
INTS9	55756	broad.mit.edu	37	chr8	28654152	28654152	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaagaacatcgctgtttttGagagaagcttggtccatggg	12	7	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28654152	C	C	28654152	2	2	6	1	0	0	0	0	0	0	0	1	7855	1277	45	4		4	INTS9	8	28654152	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	5462967	28654152	117709870	227	5875											
WRN	7486	broad.mit.edu	37	chr8	30924661	30924661	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggagtaaatttcctctcaCtgaggaccagaaactgtatg	9	8	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30924661	T	T	30924661	3	4	6	1	0	0	0	0	1	0	0	0	17529	565	20	4	635	4	WRN	8	30924661	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2270509	30924661	115439361	228	5876											
UNC5D	137970	broad.mit.edu	37	chr8	35584047	35584047	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttagtaatgccaaatacaGgtgggtggtaagtgtgtgtt	14	4	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35584047	A	A	35584047	3	1	6	1	0	0	0	0	1	0	0	0	17121	1014	35	4	1719	4	UNC5D	8	35584047	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	4659386	35584047	110779975	229	5877											
HTRA4	203100	broad.mit.edu	37	chr8	38839335	38839335	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtttcgtcttgtgcttttCaggaacactcaatcttttgt	8	8	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38839335	G	G	38839335	1	3	6	0	1	0	0	0	0	0	0	0	7526	841	29	4		4	HTRA4	8	38839335	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	3255288	38839335	107524687	230	5878											
PLAT	5327	broad.mit.edu	37	chr8	42036400	42036400	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtgcccagcatgggcgcGccactcctggttacctggca	13	14	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42036400	A	A	42036400	1	1	6	0	1	0	0	0	0	0	0	0	12116	1102	38	4		4	PLAT	8	42036400	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	3197065	42036400	104327622	231	5879											
SGK196	84197	broad.mit.edu	37	chr8	42977285	42977285	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaggagcacaaagttgcActctcacagctcaccagcct	9	13	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42977285	G	G	42977285	2	3	6	1	0	0	0	0	0	0	0	1	14321	146	6	5		5	SGK196	8	42977285	Silent	SNP	A	TCGA-05-4389-01A-01D-1265-08	940885	42977285	103386737	232	5880											
POTEA	340441	broad.mit.edu	37	chr8	43159972	43159972	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaaccttttcgccttcttGgcagcagggaccagttttgt	9	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43159972	C	C	43159972	1	2	6	0	1	0	0	0	0	0	0	0	12356	1363	47	4		4	POTEA	8	43159972	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	182687	43159972	103204050	233	5881											
MRPL15	29088	broad.mit.edu	37	chr8	55050033	55050033	+	Intron	DEL	T	-	-													tttggtgttatataggaggaTtttttttttagacagagtct							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55050033	-	-	55050033	6	5	6	0	1	1	0	1	0	0	0	0	9874	1508	52	0		0	MRPL15	8	55050033	Intron	DEL	T	TCGA-05-4389-01A-01D-1265-08	11890061	55050033	91313989	234	5882											
ARFGEF1	10565	broad.mit.edu	37	chr8	68112721	68112721	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttctgatgttagagtgagGaagtaacttagtgcttcact	10	6	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68112721	A	A	68112721	2	1	6	1	0	0	0	0	0	0	0	1	854	1165	41	4		4	ARFGEF1	8	68112721	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	13062688	68112721	78251301	235	5883											
DCAF4L2	138009	broad.mit.edu	37	chr8	88886032	88886032	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctatgaatctggacctttttCctctgcatgcagcttacacg	7	12	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88886032	G	G	88886032	3	3	6	1	0	0	0	0	1	0	0	0	4305	854	30	4	1023	4	DCAF4L2	8	88886032	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	20773311	88886032	57477990	236	5884											
KIAA1429	25962	broad.mit.edu	37	chr8	95521993	95521993	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacactgtctccaggagaccGcaccaaagctaaaagatcct	7	13	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95521993	A	A	95521993	3	1	6	1	0	0	0	0	1	0	0	0	8301	1086	38	4	1676	4	KIAA1429	8	95521993	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	6635961	95521993	50842029	237	5885											
PTDSS1	9791	broad.mit.edu	37	chr8	97342402	97342402	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgaagttctgggaaattGaacttttttgtgcagcatca	9	8	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97342402	A	A	97342402	1	1	6	0	1	0	0	0	0	0	0	0	12842	1305	45	4		4	PTDSS1	8	97342402	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1820409	97342402	49021620	238	5886											
KCNS2	3788	broad.mit.edu	37	chr8	99440859	99440859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccaaatccctgacagcCagggcaaccctggcgaggac	10	14	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99440859	A	A	99440859	3	1	6	1	0	0	0	0	1	0	0	0	8159	595	21	2	654	2	KCNS2	8	99440859	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2098457	99440859	46923163	239	5887											
RGS22	26166	broad.mit.edu	37	chr8	101105679	101105679	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataataataaactcactggaAggcttaggaattcattaaag	7	5	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101105679	C	C	101105679	3	2	6	1	0	0	0	0	1	0	0	0	13414	72	3	5	3781	5	RGS22	8	101105679	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	1664820	101105679	45258343	240	5888											
SNX31	169166	broad.mit.edu	37	chr8	101608886	101608886	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaggaaagtgacctgccagCacttcaccctgctcatctgg	9	14	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101608886	G	G	101608886	3	3	6	1	0	0	0	0	1	0	0	0	15015	710	25	4	383	4	SNX31	8	101608886	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	503207	101608886	44755136	241	5889											
CSMD3	114788	broad.mit.edu	37	chr8	114290863	114290863	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgagcactaactgcaaaatCactggtcaaacgtagtgaga	9	8	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114290863	A	A	114290863	3	1	6	1	0	0	0	0	1	0	0	0	3980	826	29	3	10927	3	CSMD3	8	114290863	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	12681977	114290863	32073159	242	5890											
ENPP2	5168	broad.mit.edu	37	chr8	120570028	120570028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaaatgacctctgtgcaCtcttgcacacagagccaacg	7	15	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120570028	A	A	120570028	1	1	6	0	1	0	0	0	0	0	0	0	5172	580	20	3		3	ENPP2	8	120570028	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	6279165	120570028	25793994	243	5891											
DEPDC6	64798	broad.mit.edu	37	chr8	121019198	121019198	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatgggtagcttatagactGaaatgaaaactacttttcta	7	6	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121019198	A	A	121019198	1	1	6	0	1	0	0	0	0	0	0	0	4483	1305	45	4		4	DEPDC6	8	121019198	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	449170	121019198	25344824	244	5892											
ANXA13	312	broad.mit.edu	37	chr8	124724863	124724863	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcatggggaagttggacatGagaccaagtttaatcaactt	10	6	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124724863	A	A	124724863	1	1	6	0	1	0	0	0	0	0	0	0	717	1305	45	4		4	ANXA13	8	124724863	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	3705665	124724863	21639159	245	5893											
GSDMC	56169	broad.mit.edu	37	chr8	130760993	130760993	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgctccttacctagaaGaaagatgatcaggttctaca	9	8	2	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130760993	A	A	130760993	1	1	6	0	1	0	0	0	0	0	0	0	6884	957	33	4		4	GSDMC	8	130760993	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	6036130	130760993	15603029	246	5894											
ADCY8	114	broad.mit.edu	37	chr8	132002591	132002591	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtagctccatataatttaGagactggctaggtgataact	9	7	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132002591	C	C	132002591	1	2	6	0	1	0	0	0	0	0	0	0	300	957	33	4		4	ADCY8	8	132002591	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1241598	132002591	14361431	247	5895											
PUF60	22827	broad.mit.edu	37	chr8	144902889	144902889	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgtcactgctgccatctGaaagacagtaaagacagagt	9	9	2	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144902889	T	T	144902889	1	4	6	0	1	0	0	0	0	0	0	0	12932	1305	45	3		3	PUF60	8	144902889	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	12900298	144902889	1461133	248	5896											
ZNF16	7564	broad.mit.edu	37	chr8	146156370	146156370	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaccacattcaacacaggtGtagggtttttccccagtatg	8	10	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146156370	A	A	146156370	2	1	6	1	0	0	0	0	0	0	0	1	17864	1372	48	4		4	ZNF16	8	146156370	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1253481	146156370	207652	249	5897											
PTPRD	5789	broad.mit.edu	37	chr9	8465635	8465635	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaattcaacttctctcccaTaacggatgcttctgcgcttc	5	13	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8465635	A	A	8465635	3	1	6	1	0	0	0	0	1	0	0	0	12907	1406	49	5	2318	5	PTPRD	9	8465635	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08		8465635	132747796	250	5898											
ACER2	340485	broad.mit.edu	37	chr9	19435085	19435085	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcgcagagctaaagaggtAggtgccatcattcctgccta	10	11	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19435085	G	G	19435085	1	3	6	0	1	0	0	0	0	0	0	0	139	435	15	5		5	ACER2	9	19435085	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	10969450	19435085	121778346	251	5899											
ACER2	340485	broad.mit.edu	37	chr9	19446453	19446453	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggtggccggggacagGtgtgtttgcacttgctgttg	20	6	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19446453	A	A	19446453	1	1	6	0	1	0	0	0	0	0	0	0	139	1276	44	4		4	ACER2	9	19446453	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	11368	19446453	121766978	252	5900											
ACO1	48	broad.mit.edu	37	chr9	32424685	32424685	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggggcctgcgggaagaggTtgaatcctctcaactctacc	12	11	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32424685	A	A	32424685	1	1	6	0	1	0	0	0	0	0	0	0	146	1740	60	5		5	ACO1	9	32424685	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	12978232	32424685	108788746	253	5901											
NUDT2	318	broad.mit.edu	37	chr9	34339067	34339067	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagcatgtggcttgatcatCttccgaagatgcctcattcc	9	11	3	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34339067	G	G	34339067	3	3	6	1	0	0	0	0	1	0	0	0	10832	903	32	4	32	4	NUDT2	9	34339067	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1914382	34339067	106874364	254	5902											
ARID3C	138715	broad.mit.edu	37	chr9	34625717	34625717	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggcaattccagggccctTcccccacatcatgccactca	9	17	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34625717	A	A	34625717	1	1	6	0	1	0	0	0	0	0	0	0	920	1798	62	5		5	ARID3C	9	34625717	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	286650	34625717	106587714	255	5903											
TESK1	7016	broad.mit.edu	37	chr9	35607349	35607349	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctagtccgacgggaagatcGaggcttcaccgctgtcgtgg	14	11	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35607349	C	C	35607349	3	2	6	1	0	0	0	0	1	0	0	0	15889	1058	37	4	581	4	TESK1	9	35607349	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	981632	35607349	105606082	256	5904											
TLE4	7091	broad.mit.edu	37	chr9	82324521	82324521	+	Intron	SNP	C	T	T													gtgcttatttctgttgtttgCttgggaaaaattctaggtgg							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82324521	T	T	82324521	1	4	6	0	1	0	0	0	0	0	0	0	16064	812	28	4		4	TLE4	9	82324521	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	46717172	82324521	58888910	257	5905	20	2									
TLE4	7091	broad.mit.edu	37	chr9	82324529	82324529	+	Intron	SNP	A	C	C													ttctgttgtttgcttgggaaAaattctaggtgggatttgat							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82324529	C	C	82324529	1	2	6	0	1	0	0	0	0	0	0	0	16064	29	1	5		5	TLE4	9	82324529	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	8	82324529	58888902	258	5906	20	2									
FLJ46321	389763	broad.mit.edu	37	chr9	84603711	84603711	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcagtgctcagttgcttCaggcagctgagctattcaga	10	12	4	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84603711	T	T	84603711	1	4	6	0	1	0	0	0	0	0	0	0	5990	841	29	4		4	FLJ46321	9	84603711	5'UTR	SNP	C	TCGA-05-4389-01A-01D-1265-08	2279182	84603711	56609720	259	5907											
SHC3	53358	broad.mit.edu	37	chr9	91660680	91660680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgccttaaaggtgtttgCtgccagtcttcgccaaaagt	9	11	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91660680	A	A	91660680	3	1	6	1	0	0	0	0	1	0	0	0	14385	796	28	3	618	3	SHC3	9	91660680	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	7056969	91660680	49552751	260	5908											
SECISBP2	79048	broad.mit.edu	37	chr9	91949686	91949686	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaggatggtggttgccAggggctcagtagagtgggga	19	4	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91949686	T	T	91949686	1	4	6	0	1	0	0	0	0	0	0	0	14119	203	7	5		5	SECISBP2	9	91949686	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	289006	91949686	49263745	261	5909											
NOL8	55035	broad.mit.edu	37	chr9	95062098	95062098	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatgtgaagagaagctaAaatatttctaaagtatgtct	8	4	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95062098	T	T	95062098	1	4	6	0	1	0	0	0	0	0	0	0	10622	29	1	5		5	NOL8	9	95062098	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	3112412	95062098	46151333	262	5910											
BICD2	23299	broad.mit.edu	37	chr9	95481798	95481798	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctgacagggagccccGcgtgtgctccagctgcttct	12	14	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95481798	A	A	95481798	3	1	6	1	0	0	0	0	1	0	0	0	1435	1086	38	4	1460	4	BICD2	9	95481798	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	419700	95481798	45731633	263	5911											
FAM120AOS	158293	broad.mit.edu	37	chr9	96215112	96215112	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaggcaggatacagagtaAtagagggggtttcgccagag	16	6	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96215112	G	G	96215112	1	3	6	0	1	0	0	0	0	0	0	0	5462	116	4	5		5	FAM120AOS	9	96215112	5'UTR	SNP	A	TCGA-05-4389-01A-01D-1265-08	733314	96215112	44998319	264	5912											
HIATL1	84641	broad.mit.edu	37	chr9	97195133	97195133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtcttataactccatgGcattcagagaactgtcctgg	10	9	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97195133	T	T	97195133	1	4	6	0	1	0	0	0	0	0	0	0	7165	1218	42	3		3	HIATL1	9	97195133	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	980021	97195133	44018298	265	5913											
C9orf3	84909	broad.mit.edu	37	chr9	97555120	97555120	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaattgcagtgggatgctgGacagaaatgaagatggagac	14	5	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97555120	C	C	97555120	3	2	6	1	0	0	0	0	1	0	0	0	2503	1183	41	4	1048	4	C9orf3	9	97555120	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	359987	97555120	43658311	266	5914											
ZNF782	158431	broad.mit.edu	37	chr9	99581987	99581987	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagtcaataatttattggtGaataaaacttgcaacaaatg	7	4	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99581987	A	A	99581987	2	1	6	1	0	0	0	0	0	0	0	1	18284	1281	45	4		4	ZNF782	9	99581987	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	2026867	99581987	41631444	267	5915											
ABCA1	19	broad.mit.edu	37	chr9	107571867	107571867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggtacatgagaggcagCcagcttagtaattcattaaa	11	6	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107571867	A	A	107571867	1	1	6	0	1	0	0	0	0	0	0	0	28	754	26	3		3	ABCA1	9	107571867	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	7989880	107571867	33641564	268	5916											
ZBTB34	403341	broad.mit.edu	37	chr9	129642401	129642401	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaccgaggtgaaagtgaaGatggagaagtccgaccggcc	14	9	1	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129642401	C	C	129642401	3	2	6	1	0	0	0	0	1	0	0	0	17663	933	33	4	713	4	ZBTB34	9	129642401	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	22070534	129642401	11571030	269	5917											
ODF2	4957	broad.mit.edu	37	chr9	131262373	131262373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctaccagagccggctgCaagacctgaaagatcgcctg	12	14	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131262373	A	A	131262373	3	1	6	1	0	0	0	0	1	0	0	0	10922	711	25	3	2525	3	ODF2	9	131262373	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1619972	131262373	9951058	270	5918											
SETX	23064	broad.mit.edu	37	chr9	135203286	135203286	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagaaactggaactttcctGatgggttctgtacaagtaca	9	7	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135203286	C	C	135203286	3	2	6	1	0	0	0	0	1	0	0	0	14254	1280	45	4	4402	4	SETX	9	135203286	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	3940913	135203286	6010145	271	5919											
UBAC1	10422	broad.mit.edu	37	chr9	138836749	138836749	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaccccttccccagcttctCtctctcctgggacaggagcc	7	18	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138836749	G	G	138836749	1	3	6	0	1	0	0	0	0	0	0	0	16960	928	32	4		4	UBAC1	9	138836749	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	3633463	138836749	2376682	272	5920											
UBAC1	10422	broad.mit.edu	37	chr9	138837002	138837002	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcagctgctgtggccccctCggcctctgggggagcttggc	17	14	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138837002	T	T	138837002	3	4	6	1	0	0	0	0	1	0	0	0	16960	893	31	4	485	4	UBAC1	9	138837002	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	253	138837002	2376429	273	5921											
GDI2	2665	broad.mit.edu	37	chr10	5855243	5855243	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggggcaggcgcggacgcaGgacccgagcaaggaaaaggc	19	11	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5855243	C	C	5855243	1	2	6	0	1	0	0	0	0	0	0	0	6385	1015	35	4		4	GDI2	10	5855243	5'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08		5855243	129679504	274	5922											
ITIH2	3698	broad.mit.edu	37	chr10	7755192	7755192	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctattaaggagaaaactgtGggccgagctctttatgcaca	10	8	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7755192	A	A	7755192	2	1	6	1	0	0	0	0	0	0	0	1	7974	1335	47	4		4	ITIH2	10	7755192	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1899949	7755192	127779555	275	5923											
ITGA8	8516	broad.mit.edu	37	chr10	15561227	15561227	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaaatccctaactgtaTccctctaaattccctcaaca	1	13	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15561227	A	A	15561227	1	1	6	0	1	0	0	0	0	0	0	0	7952	1450	50	5		5	ITGA8	10	15561227	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	7806035	15561227	119973520	276	5924											
CUBN	8029	broad.mit.edu	37	chr10	16955722	16955722	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttgcatagatggcaattttCctgacctagttttctgacta	8	8	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16955722	G	G	16955722	1	3	6	0	1	0	0	0	0	0	0	0	4084	870	30	4		4	CUBN	10	16955722	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	1394495	16955722	118579025	277	5925											
ANKRD26	22852	broad.mit.edu	37	chr10	27303585	27303585	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttccatctgacttttcattGaagcaaaattattctctcta	4	9	4	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27303585	T	T	27303585	4	4	6	1	0	0	0	0	0	1	0	0	654	1294	45	3	586	3	ANKRD26	10	27303585	Nonsense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	10347863	27303585	108231162	278	5926											
ACBD5	91452	broad.mit.edu	37	chr10	27512279	27512279	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtccaacctgaggttatatCagaactcctgccactctttt	6	12	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27512279	T	T	27512279	3	4	6	1	0	0	0	0	1	0	0	0	125	826	29	4	1135	4	ACBD5	10	27512279	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	208694	27512279	108022468	279	5927											
WAC	51322	broad.mit.edu	37	chr10	28905133	28905133	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccatcacctggtcccaatCatacttctaatagtagtaat	5	11	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28905133	T	T	28905133	3	4	6	1	0	0	0	0	1	0	0	0	17374	826	29	4	1634	4	WAC	10	28905133	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1392854	28905133	106629614	280	5928											
ZNF248	57209	broad.mit.edu	37	chr10	38108110	38108110	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggttttattttatttaagTactttaaagcatttacagtc	6	4	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38108110	A	A	38108110	1	1	6	0	1	0	0	0	0	0	0	0	17919	1653	57	5		5	ZNF248	10	38108110	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	9202977	38108110	97426637	281	5929											
C10orf25	220979	broad.mit.edu	37	chr10	45496131	45496131	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctcaaaatttgtggaaaGtatgcagtttctaggttgga	10	4	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45496131	T	T	45496131	4	4	6	1	0	0	0	0	0	1	0	0	1609	1024	36	3	199	3	C10orf25	10	45496131	Nonsense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	7388021	45496131	90038616	282	5930											
CHAT	1103	broad.mit.edu	37	chr10	50830338	50830338	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtccctgccccaacccactCccccaccatcaggatgacct	5	21	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50830338	A	A	50830338	1	1	6	0	1	0	0	0	0	0	0	0	3344	870	30	3		3	CHAT	10	50830338	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	5334207	50830338	84704409	283	5931											
CHAT	1103	broad.mit.edu	37	chr10	50901652	50901652	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgcttcccagcaaagGtgagggcacctggggccaac	15	12	0	1	rs80150524		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50901652	C	C	50901652	1	2	6	0	1	0	0	0	0	0	0	0	3344	1276	44	4		4	CHAT	10	50901652	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	71314	50901652	84633095	284	5932											
LRRTM3	347731	broad.mit.edu	37	chr10	68686790	68686790	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgccctaagggctgtaGgtgtgaaggcaaaatggtat	15	5	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68686790	A	A	68686790	3	1	6	1	0	0	0	0	1	0	0	0	9128	1000	35	4	122	4	LRRTM3	10	68686790	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	17785138	68686790	66847957	285	5933											
TTC18	118491	broad.mit.edu	37	chr10	75036904	75036904	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcatatttgatttctgtttCacaaatatggaagcttgaaa	7	5	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75036904	G	G	75036904	1	3	6	0	1	0	0	0	0	0	0	0	16811	841	29	4		4	TTC18	10	75036904	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	6350114	75036904	60497843	286	5934											
PPP3CB	5532	broad.mit.edu	37	chr10	75198098	75198098	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagcatctttccgaggtgGcattctctcattgatcctat	7	11	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75198098	A	A	75198098	3	1	6	1	0	0	0	0	1	0	0	0	12499	1203	42	4	101	4	PPP3CB	10	75198098	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	161194	75198098	60336649	287	5935											
SEC24C	9632	broad.mit.edu	37	chr10	75526064	75526064	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcatgaagttgtgggtgGtggaaaaggtggcaagtcta	17	3	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75526064	A	A	75526064	1	1	6	0	1	0	0	0	0	0	0	0	14109	1276	44	4		4	SEC24C	10	75526064	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	327966	75526064	60008683	288	5936											
DYDC2	84332	broad.mit.edu	37	chr10	82126613	82126613	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctgctggccagattgaccAgaacttcaaaatgccacaag	9	11	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82126613	T	T	82126613	3	4	6	1	0	0	0	0	1	0	0	0	4879	188	7	5	450	5	DYDC2	10	82126613	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	6600549	82126613	53408134	289	5937											
NRG3	10718	broad.mit.edu	37	chr10	84118468	84118468	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagaatgtactgctgacagCgtttccccctgtgctttccc	8	14	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84118468	G	G	84118468	1	3	6	0	1	0	0	0	0	0	0	0	10744	783	27	4		4	NRG3	10	84118468	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	1991855	84118468	51416279	290	5938											
RNLS	55328	broad.mit.edu	37	chr10	90332672	90332672	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agactcacaggtggtgatgtCaccttgaagctgcagaatct	11	9	3	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90332672	A	A	90332672	3	1	6	1	0	0	0	0	1	0	0	0	13616	826	29	3	606	3	RNLS	10	90332672	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	6214204	90332672	45202075	291	5939											
HECTD2	143279	broad.mit.edu	37	chr10	93238018	93238018	+	Frame_Shift_Del	DEL	A	-	-													acagcctgttacgagaatggAaagggtaaactaatattttc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93238018	-	-	93238018	7	5	6	1	0	1	0	1	0	0	0	0	7107	247	9	0	707	0	HECTD2	10	93238018	Frame_Shift_Del	DEL	A	TCGA-05-4389-01A-01D-1265-08	2905346	93238018	42296729	292	5940											
SORBS1	10580	broad.mit.edu	37	chr10	97174268	97174269	+	Nonsense_Mutation	DNP	CC	AA	AA													tacggtactcgaaacagctcCcgtgaggtcaggctccgaga					rs11188316	byFrequency;by1000genomes	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	97174269	AA	AA	97174268	4	1	6	1	0	0	0	0	0	1	0	0	15041	632	22	2	3382	2	SORBS1	10	97174268	Nonsense_Mutation	DNP	CC	TCGA-05-4389-01A-01D-1265-08	3936250	97174268	38360479	293	5941											
DNTT	1791	broad.mit.edu	37	chr10	98088417	98088417	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagggcatagaaacaaaggTgattttttaaaaatgaagac	9	3	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98088417	C	C	98088417	1	2	6	0	1	0	0	0	0	0	0	0	4720	1711	59	5		5	DNTT	10	98088417	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	914149	98088417	37446330	294	5942											
LOXL4	84171	broad.mit.edu	37	chr10	100021845	100021845	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtagccacgatggcgccGggggtggcatatcaccccta	14	12	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100021845	A	A	100021845	3	1	6	1	0	0	0	0	1	0	0	0	8989	1115	39	4	1919	4	LOXL4	10	100021845	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1933428	100021845	35512902	295	5943											
HPSE2	60495	broad.mit.edu	37	chr10	100249801	100249801	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttctgccatctttctgagGacttacttgtggtggtttgt	10	8	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100249801	T	T	100249801	1	4	6	0	1	0	0	0	0	0	0	0	7412	1189	41	3		3	HPSE2	10	100249801	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	227956	100249801	35284946	296	5944											
C10orf26	54838	broad.mit.edu	37	chr10	104573073	104573073	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcccaactcccagagcagCagctcccccagctagagcag	8	18	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104573073	G	G	104573073	3	3	6	1	0	0	0	0	1	0	0	0	1610	709	25	4	1122	4	C10orf26	10	104573073	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	4323272	104573073	30961674	297	5945											
NT5C2	22978	broad.mit.edu	37	chr10	104866518	104866518	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaacagccaattaaaacaGaatgcaaatgaatgaatttc	6	6	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104866518	C	C	104866518	1	2	6	0	1	0	0	0	0	0	0	0	10782	957	33	4		4	NT5C2	10	104866518	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	293445	104866518	30668229	298	5946											
SORCS1	114815	broad.mit.edu	37	chr10	108431055	108431055	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatagctcctgcatattttCcttgcatacacttccgctct	4	15	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108431055	T	T	108431055	3	4	6	1	0	0	0	0	1	0	0	0	15044	855	30	4	1655	4	SORCS1	10	108431055	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	3564537	108431055	27103692	299	5947											
TCF7L2	6934	broad.mit.edu	37	chr10	114849310	114849310	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtattgaggtaggtctcgGagcagaatcacggtatgaga	15	5	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114849310	T	T	114849310	1	4	6	0	1	0	0	0	0	0	0	0	15820	1189	41	3		3	TCF7L2	10	114849310	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	6418255	114849310	20685437	300	5948											
C10orf119	79892	broad.mit.edu	37	chr10	121591603	121591603	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgcatttccacaaagtcatCttcaactgcctttatcaaaa	3	13	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121591603	G	G	121591603	3	3	6	1	0	0	0	0	1	0	0	0	1599	913	32	4	213	4	C10orf119	10	121591603	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	6742293	121591603	13943144	301	5949											
FGFR2	2263	broad.mit.edu	37	chr10	123247480	123247481	+	Intron	INS	-	A	A													cctcacccccgcccctgcccINSactgtgttactgccatcgac					rs67358011		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123247481	A	A	123247480	6	5	6	0	1	1	1	0	0	0	0	0	5923	609	21	0		0	FGFR2	10	123247480	Intron	INS	-	TCGA-05-4389-01A-01D-1265-08	1655877	123247480	12287267	302	5950											
MUC2	4583	broad.mit.edu	37	chr11	1078320	1078320	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcagaagatcaaccagcccGatgtggtgtgtgaggatccc	13	10	1	3	rs72652894		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1078320	A	A	1078320	3	1	6	1	0	0	0	0	1	0	0	0	10069	1058	37	4	625	4	MUC2	11	1078320	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08		1078320	133928196	303	5951											
MUC5B	727897	broad.mit.edu	37	chr11	1265896	1265896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccggctctgtggccaccCcctcctccaccccaggaaca	7	22	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1265896	T	T	1265896	3	4	6	1	0	0	0	0	1	0	0	0	10073	623	22	4	7917	4	MUC5B	11	1265896	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	187576	1265896	133740620	304	5952											
MUC5B	727897	broad.mit.edu	37	chr11	1273700	1273700	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccagtgtcctccgccccGctgtcctcgccctcccctgc	8	24	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1273700	A	A	1273700	2	1	6	1	0	0	0	0	0	0	0	1	10073	1074	38	4		4	MUC5B	11	1273700	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	7804	1273700	133732816	305	5953											
ZNF195	7748	broad.mit.edu	37	chr11	3381328	3381328	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaatgacgttgttacattCttgacacttgtaaggtttct	7	6	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3381328	A	A	3381328	4	1	6	1	0	0	0	0	0	1	0	0	17884	922	32	3	983	3	ZNF195	11	3381328	Nonsense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2107628	3381328	131625188	306	5954											
ART5	116969	broad.mit.edu	37	chr11	3661475	3661475	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggattcccgcagcagggCatggtgggccatttcctcct	12	14	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3661475	T	T	3661475	3	4	6	1	0	0	0	0	1	0	0	0	1004	710	25	4	703	4	ART5	11	3661475	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	280147	3661475	131345041	307	5955											
OR2AG2	338755	broad.mit.edu	37	chr11	6789999	6789999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgagagagagctgccCaagcaggaggtacatgggca	15	9	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6789999	A	A	6789999	3	1	6	1	0	0	0	0	1	0	0	0	11079	594	21	2	764	2	OR2AG2	11	6789999	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	3128524	6789999	128216517	308	5956											
OR10A4	283297	broad.mit.edu	37	chr11	6898297	6898297	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagtcatcatgggccacaTatcctgtgcccagctggcag	10	15	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6898297	A	A	6898297	3	1	6	1	0	0	0	0	1	0	0	0	10986	1406	49	5	421	5	OR10A4	11	6898297	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	108298	6898297	128108219	309	5957											
CYB5R2	51700	broad.mit.edu	37	chr11	7687611	7687617	+	Intron	DEL	CAGAGAC	-	-													actaaaacaaaacaaagagaCagagaccagtcctcaaagtg							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7687617	-	-	7687611	6	5	6	0	1	1	0	1	0	0	0	0	4160	493	17	0		0	CYB5R2	11	7687611	Intron	DEL	CAGAGAC	TCGA-05-4389-01A-01D-1265-08	789314	7687611	127318905	310	5958											
NLRP10	338322	broad.mit.edu	37	chr11	7982783	7982784	+	Missense_Mutation	DNP	GG	CT	CT													tgagctgggcttggccaccaGgagcacctggttgtatctgc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	7982784	CT	CT	7982783	3	2	6	1	0	0	0	0	1	0	0	0	10567	991	35	4	1595	4	NLRP10	11	7982783	Missense_Mutation	DNP	GG	TCGA-05-4389-01A-01D-1265-08	295172	7982783	127023733	311	5959											
RIC3	79608	broad.mit.edu	37	chr11	8159825	8159825	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggggcacttactaatttTcctgtgggtgtttccaggca	12	8	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8159825	C	C	8159825	3	2	6	1	0	0	0	0	1	0	0	0	13463	1792	62	5	701	5	RIC3	11	8159825	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	177042	8159825	126846691	312	5960											
ST5	6764	broad.mit.edu	37	chr11	8720469	8720469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaactctagcaagcaccCaccctcttacctgtcggatg	7	17	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8720469	A	A	8720469	1	1	6	0	1	0	0	0	0	0	0	0	15338	609	21	2		2	ST5	11	8720469	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	560644	8720469	126286047	313	5961											
EIF4G2	1982	broad.mit.edu	37	chr11	10821641	10821641	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtcagcattctcttacctggGagcattttctgcatattgac	8	10	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10821641	C	C	10821641	2	2	6	1	0	0	0	0	0	0	0	1	5079	1161	41	4		4	EIF4G2	11	10821641	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	2101172	10821641	124184875	314	5962											
INSC	387755	broad.mit.edu	37	chr11	15261954	15261954	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcaggcctggctgggcCctgtcctgggcctgaggctc	17	13	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15261954	G	G	15261954	1	3	6	0	1	0	0	0	0	0	0	0	7834	638	22	4		4	INSC	11	15261954	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	4440313	15261954	119744562	315	5963											
SOX6	55553	broad.mit.edu	37	chr11	16010477	16010477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagttatccccttgcttccCaccctggtggcactcatggg	9	15	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16010477	A	A	16010477	1	1	6	0	1	0	0	0	0	0	0	0	15069	609	21	2		2	SOX6	11	16010477	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	748523	16010477	118996039	316	5964											
LDHAL6A	160287	broad.mit.edu	37	chr11	18497989	18497989	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaggatctgaacccagaTataggaactgataaagatcc	9	8	1	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18497989	C	C	18497989	2	2	6	1	0	0	0	0	0	0	0	1	8771	1403	49	5		5	LDHAL6A	11	18497989	Silent	SNP	T	TCGA-05-4389-01A-01D-1265-08	2487512	18497989	116508527	317	5965											
LIN7C	55327	broad.mit.edu	37	chr11	27528274	27528274	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcactcacctctctccagcCgcacgggttcccctagcgcc	8	20	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27528274	G	G	27528274	3	3	6	1	0	0	0	0	1	0	0	0	8885	652	23	4	587	4	LIN7C	11	27528274	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	9030285	27528274	107478242	318	5966											
C11orf46	120534	broad.mit.edu	37	chr11	30352809	30352809	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttttctgagtgctaaatTtggaagacagcttgtacctg	9	8	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30352809	C	C	30352809	3	2	6	1	0	0	0	0	1	0	0	0	1655	1841	64	5	316	5	C11orf46	11	30352809	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	2824535	30352809	104653707	319	5967											
TTC17	55761	broad.mit.edu	37	chr11	43411267	43411267	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagacacaggactggaacaGagacataataaagaagaccc	10	8	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43411267	C	C	43411267	3	2	6	1	0	0	0	0	1	0	0	0	16810	933	33	4	325	4	TTC17	11	43411267	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	13058458	43411267	91595249	320	5968											
TTC17	55761	broad.mit.edu	37	chr11	43411289	43411289	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacataataaagaagacccaGactgcatcaaagccaaggtg	9	9	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43411289	A	A	43411289	3	1	6	1	0	0	0	0	1	0	0	0	16810	942	33	4	347	4	TTC17	11	43411289	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	22	43411289	91595227	321	5969											
C11orf94	143678	broad.mit.edu	37	chr11	45928262	45928262	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagagagaaaagagggcAtgggtggtagggggcagctg	19	4	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45928262	G	G	45928262	1	3	6	0	1	0	0	0	0	0	0	0	1686	232	8	5		5	C11orf94	11	45928262	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	2516973	45928262	89078254	322	5970											
CKAP5	9793	broad.mit.edu	37	chr11	46799028	46799029	+	Frame_Shift_Ins	INS	-	T	T													tgatgatagggatgcctaaaINSttttttacatgttgcttaat							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46799029	T	T	46799028	7	5	6	1	0	1	1	0	0	0	0	0	3476	98	4	0	3363	0	CKAP5	11	46799028	Frame_Shift_Ins	INS	-	TCGA-05-4389-01A-01D-1265-08	870766	46799028	88207488	323	5971											
MYBPC3	4607	broad.mit.edu	37	chr11	47364614	47364614	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacttctcgccacccaccaCgcactggtaggctgcgtcgt	9	17	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47364614	T	T	47364614	3	4	6	1	0	0	0	0	1	0	0	0	10107	536	19	4	2595	4	MYBPC3	11	47364614	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	565586	47364614	87641902	324	5972											
OR4A15	81328	broad.mit.edu	37	chr11	55136023	55136023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttgcaccaatacctatGtcactgggctttctatgata	7	10	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55136023	T	T	55136023	3	4	6	1	0	0	0	0	1	0	0	0	11134	1377	48	3	666	3	OR4A15	11	55136023	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	7771409	55136023	79870493	325	5973											
OR5M9	390162	broad.mit.edu	37	chr11	56230488	56230488	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctagacattttactgccAtaaagcagagggttgcagcc	10	10	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56230488	G	G	56230488	2	3	6	1	0	0	0	0	0	0	0	1	11271	224	8	5		5	OR5M9	11	56230488	Silent	SNP	A	TCGA-05-4389-01A-01D-1265-08	1094465	56230488	78776028	326	5974											
AHNAK	79026	broad.mit.edu	37	chr11	62300197	62300197	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagagatcctacaggttccGgttttcccggaaggactgcc	11	11	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62300197	A	A	62300197	2	1	6	1	0	0	0	0	0	0	0	1	414	1103	39	4		4	AHNAK	11	62300197	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	6069709	62300197	72706319	327	5975											
POLR2G	5436	broad.mit.edu	37	chr11	62532822	62532822	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctttcagtccatcccttCagagatggagtttgatccta	7	11	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62532822	T	T	62532822	3	4	6	1	0	0	0	0	1	0	0	0	12315	838	29	4	362	4	POLR2G	11	62532822	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	232625	62532822	72473694	328	5976											
GPR137	56834	broad.mit.edu	37	chr11	64056845	64056845	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtccccctaggatggggGgcatggccctggctgccaga	16	14	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64056845	T	T	64056845	1	4	6	0	1	0	0	0	0	0	0	0	6710	1247	43	2		2	GPR137	11	64056845	3'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08	1524023	64056845	70949671	329	5977											
CAPN1	823	broad.mit.edu	37	chr11	64973314	64973314	+	Intron	DEL	A	-	-													tcaccttgtttcactgcttgAaaaatgcttctccccacctg							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64973314	-	-	64973314	6	5	6	0	1	1	0	1	0	0	0	0	2648	261	9	0		0	CAPN1	11	64973314	Intron	DEL	A	TCGA-05-4389-01A-01D-1265-08	916469	64973314	70033202	330	5978											
SART1	9092	broad.mit.edu	37	chr11	65732040	65732040	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggttaatgccatcaagaaGggtgagtatggggctgagga	17	4	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65732040	C	C	65732040	3	2	6	1	0	0	0	0	1	0	0	0	13958	1014	35	4	436	4	SART1	11	65732040	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	758726	65732040	69274476	331	5979											
EIF1AD	84285	broad.mit.edu	37	chr11	65766818	65766818	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaccccaaggcttgttcctCacctgttcctgttgttgtgt	8	14	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65766818	T	T	65766818	1	4	6	0	1	0	0	0	0	0	0	0	5031	841	29	4		4	EIF1AD	11	65766818	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	34778	65766818	69239698	332	5980											
MTL5	9633	broad.mit.edu	37	chr11	68483453	68483453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggcacagacggcacagTgagtagtgaaaagaagagca	15	7	0	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68483453	C	C	68483453	1	2	6	0	1	0	0	0	0	0	0	0	10030	1711	59	5		5	MTL5	11	68483453	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	2716635	68483453	66523063	333	5981											
PPFIA1	8500	broad.mit.edu	37	chr11	70184483	70184483	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttgcttttctgtaggatCagcttgtcctaaacattgaa	7	8	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70184483	G	G	70184483	3	3	6	1	0	0	0	0	1	0	0	0	12405	827	29	4	1541	4	PPFIA1	11	70184483	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1701030	70184483	64822033	334	5982											
PPFIA1	8500	broad.mit.edu	37	chr11	70185240	70185240	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagagtttattttcttttCttctaataatgatcattctt	4	5	5	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70185240	T	T	70185240	1	4	6	0	1	0	0	0	0	0	0	0	12405	928	32	4		4	PPFIA1	11	70185240	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	757	70185240	64821276	335	5983											
PDE2A	5138	broad.mit.edu	37	chr11	72288643	72288643	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtcctgcaacagcctgcGggtgcatggggggcagaggg	19	10	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72288643	A	A	72288643	1	1	6	0	1	0	0	0	0	0	0	0	11730	1131	39	4		4	PDE2A	11	72288643	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2103403	72288643	62717873	336	5984											
PDE2A	5138	broad.mit.edu	37	chr11	72290425	72290425	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatccagcatgcgctgataGtcctgaggcgagggcagggg	17	9	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72290425	A	A	72290425	2	1	6	1	0	0	0	0	0	0	0	1	11730	1020	36	4		4	PDE2A	11	72290425	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1782	72290425	62716091	337	5985											
TSKU	25987	broad.mit.edu	37	chr11	76507537	76507537	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcgggcaccaacctggtgCccctgcctgaggcgctgctc	12	16	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76507537	G	G	76507537	3	3	6	1	0	0	0	0	1	0	0	0	16752	739	26	4	879	4	TSKU	11	76507537	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	4217112	76507537	58498979	338	5986											
NOX4	50507	broad.mit.edu	37	chr11	89133582	89133582	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaatatacttcaagaaaTactcatattgtagaaatcta	4	5	3	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89133582	C	C	89133582	1	2	6	0	1	0	0	0	0	0	0	0	10653	1421	49	5		5	NOX4	11	89133582	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	12626045	89133582	45872934	339	5987											
FAT3	120114	broad.mit.edu	37	chr11	92534374	92534374	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagtggacaccctgaggaTtttgcccagtcagaatgtct	10	10	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92534374	C	C	92534374	3	2	6	1	0	0	0	0	1	0	0	0	5748	1493	52	5	8229	5	FAT3	11	92534374	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	3400792	92534374	42472142	340	5988											
DSCAML1	57453	broad.mit.edu	37	chr11	117647510	117647510	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgggacgcttcttacctggGatgatggagactgtgtcttt	13	9	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117647510	A	A	117647510	2	1	6	1	0	0	0	0	0	0	0	1	4809	1164	41	4		4	DSCAML1	11	117647510	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	25113136	117647510	17359006	341	5989											
FXYD6	53826	broad.mit.edu	37	chr11	117712384	117712384	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgggtcgtgaagataacaCggagggcaggcagcctcctt	14	10	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117712384	T	T	117712384	1	4	6	0	1	0	0	0	0	0	0	0	6182	551	19	4		4	FXYD6	11	117712384	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	64874	117712384	17294132	342	5990											
ATP5L	10632	broad.mit.edu	37	chr11	118279753	118279753	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggtggccactgaggtgttGatgtggttttatgtcggaga	16	4	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118279753	T	T	118279753	3	4	6	1	0	0	0	0	1	0	0	0	1164	1281	45	3	262	3	ATP5L	11	118279753	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	567369	118279753	16726763	343	5991											
TECTA	7007	broad.mit.edu	37	chr11	120996139	120996139	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttttgatggccagcactaCgcctccatttccgtcccagg	8	15	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120996139	T	T	120996139	2	4	6	1	0	0	0	0	0	0	0	1	15869	547	19	4		4	TECTA	11	120996139	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2716386	120996139	14010377	344	5992											
VWA5A	4013	broad.mit.edu	37	chr11	124007327	124007327	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaatatacactccaggGcaagacttttgaggataagg	9	9	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124007327	C	C	124007327	3	2	6	1	0	0	0	0	1	0	0	0	17369	1203	42	4	1621	4	VWA5A	11	124007327	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	3011188	124007327	10999189	345	5993											
ROBO3	64221	broad.mit.edu	37	chr11	124740078	124740078	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagcgtccctcattcctgCgcagaccagtgaatcaggtg	11	12	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124740078	T	T	124740078	3	4	6	1	0	0	0	0	1	0	0	0	13626	768	27	4	802	4	ROBO3	11	124740078	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	732751	124740078	10266438	346	5994											
HEPACAM	220296	broad.mit.edu	37	chr11	124793377	124793377	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagggacttcaaaggggcaAgatgtggtgagcagaacttc	16	6	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124793377	T	T	124793377	1	4	6	0	1	0	0	0	0	0	0	0	7119	87	3	5		5	HEPACAM	11	124793377	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	53299	124793377	10213139	347	5995											
IQSEC3	440073	broad.mit.edu	37	chr12	248332	248332	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcagctgagcagcagcagCacgtccaccaagtccgccaa	11	15	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248332	G	G	248332	3	3	6	1	0	0	0	0	1	0	0	0	7889	709	25	4	1817	4	IQSEC3	12	248332	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08		248332	133603563	348	5996											
CACNA1C	775	broad.mit.edu	37	chr12	2614019	2614019	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccaggtcaatgatgcCgtaggaagggactggccctg	13	10	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2614019	G	G	2614019	2	3	6	1	0	0	0	0	0	0	0	1	2566	639	23	4		4	CACNA1C	12	2614019	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2365687	2614019	131237876	349	5997											
PRMT8	56341	broad.mit.edu	37	chr12	3701558	3701558	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacataagggagaagggcCccacagagctggctcgctca	14	11	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3701558	T	T	3701558	1	4	6	0	1	0	0	0	0	0	0	0	12648	638	22	4		4	PRMT8	12	3701558	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	1087539	3701558	130150337	350	5998											
GALNT8	26290	broad.mit.edu	37	chr12	4872447	4872447	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatagattttggagacgtttCttccagaatggcactccggg	11	8	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4872447	G	G	4872447	3	3	6	1	0	0	0	0	1	0	0	0	6281	913	32	4	1418	4	GALNT8	12	4872447	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1170889	4872447	128979448	351	5999											
PRB4	5545	broad.mit.edu	37	chr12	11035557	11035557	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttggggcattggtattagCcaattcctgacaagaaaatg	10	7	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11035557	G	G	11035557	1	3	6	0	1	0	0	0	0	0	0	0	12551	754	26	4		4	PRB4	12	11035557	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	6163110	11035557	122816338	352	6000											
GRIN2B	2904	broad.mit.edu	37	chr12	13769645	13769645	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggccacaacataacaaacAgcctgtcccagtattgtctg	7	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13769645	C	C	13769645	1	2	6	0	1	0	0	0	0	0	0	0	6846	203	7	5		5	GRIN2B	12	13769645	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	2734088	13769645	120082250	353	6001											
PLEKHA5	54477	broad.mit.edu	37	chr12	19501350	19501350	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagggtccagattatagactCtacaagagtgaaccagagtt	10	7	1	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19501350	G	G	19501350	2	3	6	1	0	0	0	0	0	0	0	1	12154	900	32	4		4	PLEKHA5	12	19501350	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	5731705	19501350	114350545	354	6002											
PYROXD1	79912	broad.mit.edu	37	chr12	21614019	21614019	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaatctaccttcaggatGagtttagaattttgaagaaa	8	4	2	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21614019	A	A	21614019	3	1	6	1	0	0	0	0	1	0	0	0	12974	1291	45	4	841	4	PYROXD1	12	21614019	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2112669	21614019	112237876	355	6003											
TMTC1	83857	broad.mit.edu	37	chr12	29811576	29811576	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggaaacatttgtggggCcttccttttcgaacaggaac	10	11	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29811576	T	T	29811576	1	4	6	0	1	0	0	0	0	0	0	0	16383	754	26	4		4	TMTC1	12	29811576	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	8197557	29811576	104040319	356	6004											
KIF21A	55605	broad.mit.edu	37	chr12	39711857	39711857	+	Intron	DEL	T	-	-													tatataaataattggggctcTtttccataatgacttactta							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39711857	-	-	39711857	6	5	6	0	1	1	0	1	0	0	0	0	8358	1624	56	0		0	KIF21A	12	39711857	Intron	DEL	T	TCGA-05-4389-01A-01D-1265-08	9900281	39711857	94140038	357	6005											
NELL2	4753	broad.mit.edu	37	chr12	45169914	45169914	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actgatccaatctattcattCgctgttcagctcgagacagc	7	12	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45169914	T	T	45169914	3	4	6	1	0	0	0	0	1	0	0	0	10429	884	31	4	1720	4	NELL2	12	45169914	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	5458057	45169914	88681981	358	6006											
DDX23	9416	broad.mit.edu	37	chr12	49231355	49231355	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccttctcttcccggatcttCtgccgcccttcctcatcctc	4	20	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49231355	T	T	49231355	2	4	6	1	0	0	0	0	0	0	0	1	4383	912	32	4		4	DDX23	12	49231355	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	4061441	49231355	84620540	359	6007											
RHEBL1	121268	broad.mit.edu	37	chr12	49462658	49462658	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcttgcaaaatccatacTctagccatccatcgaacagg	5	12	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49462658	C	C	49462658	1	2	6	0	1	0	0	0	0	0	0	0	13438	1566	54	5		5	RHEBL1	12	49462658	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	231303	49462658	84389237	360	6008											
LARP4	113251	broad.mit.edu	37	chr12	50829374	50829374	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaataaaaaagttgactAcagaccctgatctaattctt	5	7	2	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50829374	G	G	50829374	3	3	6	1	0	0	0	0	1	0	0	0	8702	391	14	5	520	5	LARP4	12	50829374	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	1366716	50829374	83022521	361	6009											
KRT7	3855	broad.mit.edu	37	chr12	52628896	52628896	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatcccgctgtgggtggcaCgctctggctcctcttgagtt	12	13	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52628896	T	T	52628896	1	4	6	0	1	0	0	0	0	0	0	0	8554	551	19	4		4	KRT7	12	52628896	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	1799522	52628896	81222999	362	6010											
KRT73	319101	broad.mit.edu	37	chr12	53012171	53012171	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccccccaggctgtaaaggctCcgactgctgaagcctccact	9	17	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53012171	G	G	53012171	2	3	6	1	0	0	0	0	0	0	0	1	8557	842	30	4		4	KRT73	12	53012171	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	383275	53012171	80839724	363	6011											
KRT4	3851	broad.mit.edu	37	chr12	53202129	53202129	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcctctggatcatcctgttGagctctgcaatttcactctt	7	12	5	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53202129	A	A	53202129	2	1	6	1	0	0	0	0	0	0	0	1	8548	1277	45	4		4	KRT4	12	53202129	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	189958	53202129	80649766	364	6012											
OR6C1	390321	broad.mit.edu	37	chr12	55714574	55714574	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatttcttcctcagaaattTctccatattagaaatttcgt	4	8	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55714574	C	C	55714574	3	2	6	1	0	0	0	0	1	0	0	0	11284	1783	62	5	193	5	OR6C1	12	55714574	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	2512445	55714574	78137321	365	6013											
NUP107	57122	broad.mit.edu	37	chr12	69082675	69082675	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctttactccaactgtgAtgataaaattctttataaat	5	7	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69082675	T	T	69082675	1	4	6	0	1	0	0	0	0	0	0	0	10848	348	12	5		5	NUP107	12	69082675	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	13368101	69082675	64769220	366	6014											
ZFC3H1	196441	broad.mit.edu	37	chr12	72036255	72036255	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgtatccatagcaacttCttcatagttatcatactgat	4	9	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72036255	T	T	72036255	3	4	6	1	0	0	0	0	1	0	0	0	17759	922	32	4	4501	4	ZFC3H1	12	72036255	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2953580	72036255	61815640	367	6015											
ZFC3H1	196441	broad.mit.edu	37	chr12	72050808	72050808	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaaaagttttgacttgtGttttctcctcaggagctact	8	9	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72050808	A	A	72050808	3	1	6	1	0	0	0	0	1	0	0	0	17759	1377	48	4	5233	4	ZFC3H1	12	72050808	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	14553	72050808	61801087	368	6016											
NAV3	89795	broad.mit.edu	37	chr12	78562616	78562616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggcggctattcagggaGcactgaatggtccagaccat	12	12	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78562616	T	T	78562616	3	4	6	1	0	0	0	0	1	0	0	0	10279	971	34	3	5045	3	NAV3	12	78562616	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	6511808	78562616	55289279	369	6017											
CCDC41	51134	broad.mit.edu	37	chr12	94772534	94772534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcactttaaaaaagtatgCcatactctactgggaagtaa	7	8	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94772534	A	A	94772534	1	1	6	0	1	0	0	0	0	0	0	0	2840	754	26	3		3	CCDC41	12	94772534	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	16209918	94772534	39079361	370	6018											
CCDC41	51134	broad.mit.edu	37	chr12	94818718	94818718	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagccaaaagtagaaatcccGggcctggaagtcacggatag	12	9	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94818718	A	A	94818718	1	1	6	0	1	0	0	0	0	0	0	0	2840	1131	39	4		4	CCDC41	12	94818718	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	46184	94818718	39033177	371	6019											
NDUFA12	55967	broad.mit.edu	37	chr12	95365555	95365555	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgccttagattttttccaTctgaacatccctactcctca	3	13	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95365555	C	C	95365555	1	2	6	0	1	0	0	0	0	0	0	0	10357	1450	50	5		5	NDUFA12	12	95365555	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	546837	95365555	38486340	372	6020											
ANKS1B	56899	broad.mit.edu	37	chr12	99640700	99640700	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctgaaagccacgatataAtagcagtgcccttatgaaca	8	9	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99640700	G	G	99640700	1	3	6	0	1	0	0	0	0	0	0	0	689	116	4	5		5	ANKS1B	12	99640700	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	4275145	99640700	34211195	373	6021											
HVCN1	84329	broad.mit.edu	37	chr12	111099152	111099152	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattctcccatttcttgtaGttgatgttccaggcatggta	8	9	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111099152	A	A	111099152	2	1	6	1	0	0	0	0	0	0	0	1	7532	1020	36	4		4	HVCN1	12	111099152	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	11458452	111099152	22752743	374	6022											
RBM19	9904	broad.mit.edu	37	chr12	114358414	114358414	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctgagaatcttcactttAcctggagctgcttgagagct	10	10	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114358414	C	C	114358414	5	2	6	1	0	0	0	0	0	0	1	0	13229	405	14	5	519	5	RBM19	12	114358414	Splice_Site	SNP	A	TCGA-05-4389-01A-01D-1265-08	3259262	114358414	19493481	375	6023											
GCN1L1	10985	broad.mit.edu	37	chr12	120607839	120607839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaccatgaggttcatcctGcagatgacaagcaaacctgt	9	11	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120607839	A	A	120607839	1	1	6	0	1	0	0	0	0	0	0	0	6361	1334	46	4		4	GCN1L1	12	120607839	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	6249425	120607839	13244056	376	6024											
CABP1	9478	broad.mit.edu	37	chr12	121098634	121098634	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaggaactgcgagatgcTttccgagaggtaacggacag	14	7	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121098634	A	A	121098634	2	1	6	1	0	0	0	0	0	0	0	1	2557	1596	56	5		5	CABP1	12	121098634	Silent	SNP	T	TCGA-05-4389-01A-01D-1265-08	490795	121098634	12753261	377	6025											
ABCB9	23457	broad.mit.edu	37	chr12	123430863	123430863	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtttttccacccttcGctggcaccagctatatgcaa	8	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123430863	A	A	123430863	1	1	6	0	1	0	0	0	0	0	0	0	48	1102	38	4		4	ABCB9	12	123430863	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2332229	123430863	10421032	378	6026											
TMEM132B	114795	broad.mit.edu	37	chr12	126138528	126138528	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatggttccaccgtggcacaCctgttggccaagaggaaagt	12	10	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126138528	T	T	126138528	3	4	6	1	0	0	0	0	1	0	0	0	16169	507	18	4	2543	4	TMEM132B	12	126138528	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2707665	126138528	7713367	379	6027											
ANKLE2	23141	broad.mit.edu	37	chr12	133317938	133317939	+	Intron	INS	-	C	C													aaagcaaagctctgctgtgtINScccccaacgctccaaggccc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133317939	C	C	133317938	6	5	6	0	1	1	1	0	0	0	0	0	633	1682	58	0		0	ANKLE2	12	133317938	Intron	INS	-	TCGA-05-4389-01A-01D-1265-08	7179410	133317938	533957	380	6028											
PARP4	143	broad.mit.edu	37	chr13	25052097	25052097	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgctaatttagaaaatgTtgaattaattcatgcagtaa	7	3	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25052097	C	C	25052097	1	2	6	0	1	0	0	0	0	0	0	0	11557	1740	60	5		5	PARP4	13	25052097	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08		25052097	90117781	381	6029											
FLT1	2321	broad.mit.edu	37	chr13	28903894	28903894	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcaaggaagagtcagggCgacaggacaatggggctcct	16	8	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28903894	T	T	28903894	1	4	6	0	1	0	0	0	0	0	0	0	5999	783	27	4		4	FLT1	13	28903894	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	3851797	28903894	86265984	382	6030											
RXFP2	122042	broad.mit.edu	37	chr13	32366242	32366242	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcactagacatatatatgtAtttattggctttcaacaaat	5	6	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32366242	G	G	32366242	1	3	6	0	1	0	0	0	0	0	0	0	13871	464	16	5		5	RXFP2	13	32366242	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	3462348	32366242	82803636	383	6031											
ATP7B	540	broad.mit.edu	37	chr13	52541044	52541044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaacctcaccacaaaaaCcgagagcactttgaaaacaa	5	12	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52541044	A	A	52541044	1	1	6	0	1	0	0	0	0	0	0	0	1195	522	18	3		3	ATP7B	13	52541044	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	20174802	52541044	62628834	384	6032											
GPC6	10082	broad.mit.edu	37	chr13	94482698	94482698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccatttggagacgtgcCccggaaactgaagattcagg	12	10	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94482698	A	A	94482698	3	1	6	1	0	0	0	0	1	0	0	0	6667	623	22	2	621	2	GPC6	13	94482698	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	41941654	94482698	20687180	385	6033											
ABCC4	10257	broad.mit.edu	37	chr13	95724037	95724037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccaggctggtggtgggCgtttctgatattcccaaggt	17	8	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95724037	A	A	95724037	3	1	6	1	0	0	0	0	1	0	0	0	55	768	27	3	916	3	ABCC4	13	95724037	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1241339	95724037	19445841	386	6034											
TMTC4	84899	broad.mit.edu	37	chr13	101257341	101257341	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggggtcaagctgcaaggaGatttcatagtgtttcttggc	14	6	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101257341	C	C	101257341	3	2	6	1	0	0	0	0	1	0	0	0	16386	932	33	4	96	4	TMTC4	13	101257341	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	5533304	101257341	13912537	387	6035											
TMCO3	55002	broad.mit.edu	37	chr13	114164516	114164516	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtggtcattgcctgttgtCactaaaaagtgtgtgactca	11	7	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114164516	T	T	114164516	1	4	6	0	1	0	0	0	0	0	0	0	16120	841	29	4		4	TMCO3	13	114164516	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	12907175	114164516	1005362	388	6036											
OR4K15	81127	broad.mit.edu	37	chr14	20444056	20444057	+	Frame_Shift_Ins	INS	-	C	C													ctgcctggcccagattttctINSttgttcatctcttcactggc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20444057	C	C	20444056	7	5	6	1	0	1	1	0	0	0	0	0	11164	1609	56	0	381	0	OR4K15	14	20444056	Frame_Shift_Ins	INS	-	TCGA-05-4389-01A-01D-1265-08		20444056	86905484	389	6037											
OR4E2	26686	broad.mit.edu	37	chr14	22134212	22134213	+	Frame_Shift_Ins	INS	-	T	T													gcagctcaggcagagacaagINStttttttcacgaaatcatat							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22134213	T	T	22134212	7	5	6	1	0	1	1	0	0	0	0	0	11154	1029	36	0	918	0	OR4E2	14	22134212	Frame_Shift_Ins	INS	-	TCGA-05-4389-01A-01D-1265-08	1690156	22134212	85215328	390	6038											
MMP14	4323	broad.mit.edu	37	chr14	23306043	23306043	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaccatgtctcccgccccaaGacccccccgttgtctcctgc	7	21	2	1	rs17884647		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23306043	A	A	23306043	3	1	6	1	0	0	0	0	1	0	0	0	9746	942	33	4	19	4	MMP14	14	23306043	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1171831	23306043	84043497	391	6039											
MYH6	4624	broad.mit.edu	37	chr14	23858486	23858486	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagggcagaacctagacTggagggtctttcccttgcag	13	11	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23858486	A	A	23858486	1	1	6	0	1	0	0	0	0	0	0	0	10132	1595	55	5		5	MYH6	14	23858486	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	552443	23858486	83491054	392	6040											
MYH7	4625	broad.mit.edu	37	chr14	23900998	23900998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctggtccttcttgctgCggtccccaatggctgcaata	11	13	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23900998	T	T	23900998	3	4	6	1	0	0	0	0	1	0	0	0	10133	768	27	4	5332	4	MYH7	14	23900998	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	42512	23900998	83448542	393	6041											
NFKBIA	4792	broad.mit.edu	37	chr14	35873088	35873088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggctgcgggggattgcgCaaggccggggtttctggagg	22	8	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35873088	A	A	35873088	1	1	6	0	1	0	0	0	0	0	0	0	10472	725	25	3		3	NFKBIA	14	35873088	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	11972090	35873088	71476452	394	6042											
LRFN5	145581	broad.mit.edu	37	chr14	42355929	42355929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattttgtctcctaatcttgCaaccctttgtgccaagaaag	7	10	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42355929	A	A	42355929	3	1	6	1	0	0	0	0	1	0	0	0	9028	710	25	3	103	3	LRFN5	14	42355929	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	6482841	42355929	64993611	395	6043											
FAM179B	23116	broad.mit.edu	37	chr14	45490359	45490359	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaactccacgcccatcagAcatactggtatgggtgaagt	10	10	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45490359	T	T	45490359	1	4	6	0	1	0	0	0	0	0	0	0	5551	290	10	5		5	FAM179B	14	45490359	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	3134430	45490359	61859181	396	6044											
SDCCAG1	9147	broad.mit.edu	37	chr14	50307515	50307515	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacagcaaatttaacatcatCtgcctcatcagttcgaaacc	4	12	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50307515	T	T	50307515	3	4	6	1	0	0	0	0	1	0	0	0	14070	913	32	4	2919	4	SDCCAG1	14	50307515	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	4817156	50307515	57042025	397	6045											
KIAA0586	9786	broad.mit.edu	37	chr14	58896211	58896211	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtattgtcaaataatgCattcttaaattatgtttgat	5	4	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58896211	T	T	58896211	1	4	6	0	1	0	0	0	0	0	0	0	8256	725	25	4		4	KIAA0586	14	58896211	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	8588696	58896211	48453329	398	6046											
RBM25	58517	broad.mit.edu	37	chr14	73554904	73554904	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgttatcttttctaggccaGactgtgctatttcagtgtag	10	7	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73554904	A	A	73554904	1	1	6	0	1	0	0	0	0	0	0	0	13233	957	33	4		4	RBM25	14	73554904	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	14658693	73554904	33794636	399	6047											
PSEN1	5663	broad.mit.edu	37	chr14	73653563	73653563	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgctttcttttctaggtCatccatgcctggcttattat	6	9	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73653563	T	T	73653563	2	4	6	1	0	0	0	0	0	0	0	1	12756	813	29	4		4	PSEN1	14	73653563	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	98659	73653563	33695977	400	6048											
ZDHHC22	283576	broad.mit.edu	37	chr14	77599975	77599975	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaggctgccatggttttatGctcaggaggagtcaagacag	13	8	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77599975	C	C	77599975	1	2	6	0	1	0	0	0	0	0	0	0	17739	1334	46	4		4	ZDHHC22	14	77599975	3'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08	3946412	77599975	29749565	401	6049											
VIPAR	63894	broad.mit.edu	37	chr14	77910745	77910745	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctttattcctttgttgcTggatactaaagaataagcaa	6	6	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77910745	G	G	77910745	1	3	6	0	1	0	0	0	0	0	0	0	17295	1595	55	5		5	VIPAR	14	77910745	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	310770	77910745	29438795	402	6050											
ADCK1	57143	broad.mit.edu	37	chr14	78392424	78392424	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggctgtgtgttgggggAggggaagaattggagctata	21	2	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78392424	G	G	78392424	1	3	6	0	1	0	0	0	0	0	0	0	288	319	11	5		5	ADCK1	14	78392424	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	481679	78392424	28957116	403	6051											
TTC8	123016	broad.mit.edu	37	chr14	89343673	89343673	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagctatgttgctgcgcaGaagtctgaagcagcatttcc	11	9	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89343673	T	T	89343673	3	4	6	1	0	0	0	0	1	0	0	0	16840	933	33	3	1525	3	TTC8	14	89343673	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	10951249	89343673	18005867	404	6052											
TC2N	123036	broad.mit.edu	37	chr14	92249542	92249542	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaatgttattactgtcttCacttatccaaatctgtaaag	4	8	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92249542	T	T	92249542	3	4	6	1	0	0	0	0	1	0	0	0	15787	835	29	4	101	4	TC2N	14	92249542	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2905869	92249542	15099998	405	6053											
TC2N	123036	broad.mit.edu	37	chr14	92249555	92249555	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtcttcacttatccaaatCtgtaaaggaaagtatgtaca	6	8	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92249555	T	T	92249555	1	4	6	0	1	0	0	0	0	0	0	0	15787	927	32	4		4	TC2N	14	92249555	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	13	92249555	15099985	406	6054											
FBLN5	10516	broad.mit.edu	37	chr14	92357437	92357437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtagtaatggggatgggCgggcagtggcaaggaatggg	20	4	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92357437	A	A	92357437	1	1	6	0	1	0	0	0	0	0	0	0	5757	783	27	3		3	FBLN5	14	92357437	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	107882	92357437	14992103	407	6055											
SERPINA11	256394	broad.mit.edu	37	chr14	94909287	94909287	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaagagatgccttaaagActgtggtattaaatagtctg	10	5	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94909287	G	G	94909287	1	3	6	0	1	0	0	0	0	0	0	0	14201	290	10	5		5	SERPINA11	14	94909287	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	2551850	94909287	12440253	408	6056											
SERPINA4	5267	broad.mit.edu	37	chr14	95034512	95034512	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttcccaagttctccattTctggctcctatgtattagat	5	11	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95034512	G	G	95034512	3	3	6	1	0	0	0	0	1	0	0	0	14204	1783	62	5	980	5	SERPINA4	14	95034512	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	125225	95034512	12315028	409	6057											
AK7	122481	broad.mit.edu	37	chr14	96949491	96949491	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggccagggaggctgctgagGaagcagaacgcgagcaccag	17	10	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96949491	A	A	96949491	3	1	6	1	0	0	0	0	1	0	0	0	444	1175	41	4	1971	4	AK7	14	96949491	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1914979	96949491	10400049	410	6058											
CCNK	8812	broad.mit.edu	37	chr14	99962098	99962098	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctaagagggccttctgtaGaagttacttgatgcttttgt	10	7	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99962098	A	A	99962098	1	1	6	0	1	0	0	0	0	0	0	0	2960	957	33	4		4	CCNK	14	99962098	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	3012607	99962098	7387442	411	6059											
WARS	7453	broad.mit.edu	37	chr14	100820874	100820874	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataaaatggcttcttatttTcataggcatcaagaacctga	7	7	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100820874	G	G	100820874	3	3	6	1	0	0	0	0	1	0	0	0	17376	1783	62	5	991	5	WARS	14	100820874	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	858776	100820874	6528666	412	6060											
AHNAK2	113146	broad.mit.edu	37	chr14	105415206	105415206	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcagtggtcttgaggtcCccctgcatggaggggagact	16	9	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105415206	T	T	105415206	2	4	6	1	0	0	0	0	0	0	0	1	415	610	22	4		4	AHNAK2	14	105415206	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	4594332	105415206	1934334	413	6061											
AHNAK2	113146	broad.mit.edu	37	chr14	105417681	105417681	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcagtggtcttgaggtcCccctgcatggaggggaggct	17	9	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105417681	T	T	105417681	2	4	6	1	0	0	0	0	0	0	0	1	415	610	22	4		4	AHNAK2	14	105417681	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2475	105417681	1931859	414	6062											
GPR132	29933	broad.mit.edu	37	chr14	105517957	105517957	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaacaccgggtagtgaaCgatcccgacgaggatgaaga	14	9	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105517957	T	T	105517957	3	4	6	1	0	0	0	0	1	0	0	0	6707	536	19	4	629	4	GPR132	14	105517957	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	100276	105517957	1831583	415	6063											
C15orf2	23742	broad.mit.edu	37	chr15	24922224	24922224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccccttctttctcccaaCctgtgcagaccacagactcc	5	19	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922224	A	A	24922224	3	1	6	1	0	0	0	0	1	0	0	0	1797	507	18	3	1212	3	C15orf2	15	24922224	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08		24922224	77609168	416	6064											
TRPM1	4308	broad.mit.edu	37	chr15	31355390	31355390	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccgctgccatcacaaatcAccacagggatgggaggctct	11	13	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31355390	T	T	31355390	3	4	6	1	0	0	0	0	1	0	0	0	16710	159	6	5	4065	5	TRPM1	15	31355390	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	6433166	31355390	71176002	417	6065											
RYR3	6263	broad.mit.edu	37	chr15	33941470	33941470	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagtggcagggttagccatCgggcttctcagtccctcccc	11	15	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33941470	T	T	33941470	1	4	6	0	1	0	0	0	0	0	0	0	13881	899	31	4		4	RYR3	15	33941470	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2586080	33941470	68589922	418	6066											
AQR	9716	broad.mit.edu	37	chr15	35235361	35235361	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cataaagtgacacagtacaaGaagggcaaggattctctgta	10	7	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35235361	C	C	35235361	1	2	6	0	1	0	0	0	0	0	0	0	837	957	33	4		4	AQR	15	35235361	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1293891	35235361	67296031	419	6067											
BUB1B	701	broad.mit.edu	37	chr15	40492620	40492620	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcatttagaaccaacctttGactctctagtgccttgaagt	8	10	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40492620	C	C	40492620	1	2	6	0	1	0	0	0	0	0	0	0	1581	1305	45	4		4	BUB1B	15	40492620	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	5257259	40492620	62038772	420	6068											
GANC	2595	broad.mit.edu	37	chr15	42621684	42621684	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattaaactgggcttgtgtGacccaccttttggctgaagg	12	8	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42621684	T	T	42621684	1	4	6	0	1	0	0	0	0	0	0	0	6296	1305	45	3		3	GANC	15	42621684	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2129064	42621684	59909708	421	6069											
DUOX2	50506	broad.mit.edu	37	chr15	45387213	45387213	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaccaggtcctggtggtcgTtctcctccacctcttggatg	10	14	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45387213	A	A	45387213	3	1	6	1	0	0	0	0	1	0	0	0	4841	1725	60	5	342	5	DUOX2	15	45387213	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	2765529	45387213	57144179	422	6070											
GNB5	10681	broad.mit.edu	37	chr15	52418243	52418243	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtcatagaggcgacacTggggagcaaataaataaaga	13	6	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52418243	C	C	52418243	5	2	6	1	0	0	0	0	0	0	1	0	6585	1594	55	5	288	5	GNB5	15	52418243	Splice_Site	SNP	T	TCGA-05-4389-01A-01D-1265-08	7031030	52418243	50113149	423	6071											
ALDH1A2	8854	broad.mit.edu	37	chr15	58247323	58247323	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctcaactttgtattcctgaGagctgggccctacagagaaa	10	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58247323	C	C	58247323	1	2	6	0	1	0	0	0	0	0	0	0	491	957	33	4		4	ALDH1A2	15	58247323	3'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08	5829080	58247323	44284069	424	6072											
VPS13C	54832	broad.mit.edu	37	chr15	62176562	62176562	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattgtaactattattttccTatgaaaattacattggtata	4	4	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62176562	A	A	62176562	1	1	6	0	1	0	0	0	0	0	0	0	17318	1537	53	5		5	VPS13C	15	62176562	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	3929239	62176562	40354830	425	6073											
ZNF609	23060	broad.mit.edu	37	chr15	64970196	64970196	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtagaggccaaaatcctActctgccccaggtgtctagt	9	12	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64970196	T	T	64970196	1	4	6	0	1	0	0	0	0	0	0	0	18162	406	14	5		5	ZNF609	15	64970196	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	2793634	64970196	37561196	426	6074											
MORF4L1	10933	broad.mit.edu	37	chr15	79186452	79186452	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaagaatacttcaacgtaAtgttgggtacccagctactc	7	9	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79186452	G	G	79186452	3	3	6	1	0	0	0	0	1	0	0	0	9800	101	4	5	841	5	MORF4L1	15	79186452	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	14216256	79186452	23344940	427	6075											
C15orf42	90381	broad.mit.edu	37	chr15	90128895	90128895	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactacattcttctttaggcAtattgacaataatattctca	3	9	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90128895	G	G	90128895	1	3	6	0	1	0	0	0	0	0	0	0	1809	232	8	5		5	C15orf42	15	90128895	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	10942443	90128895	12402497	428	6076											
CRTC3	64784	broad.mit.edu	37	chr15	91172586	91172586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcatctgctcttcacccttCgctccgtctgttttccctta	5	17	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91172586	T	T	91172586	3	4	6	1	0	0	0	0	1	0	0	0	3933	893	31	4	1130	4	CRTC3	15	91172586	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1043691	91172586	11358806	429	6077											
IGF1R	3480	broad.mit.edu	37	chr15	99478247	99478247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattgagtttctcaacgaaGcttctgtgatgaaggagttc	12	6	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99478247	T	T	99478247	3	4	6	1	0	0	0	0	1	0	0	0	7641	971	34	3	3213	3	IGF1R	15	99478247	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	8305661	99478247	3053145	430	6078											
AXIN1	8312	broad.mit.edu	37	chr16	354475	354475	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactgtgaggcacgggggttGaaaggtcacaggctaaacat	15	7	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	354475	C	C	354475	1	2	6	0	1	0	0	0	0	0	0	0	1241	1305	45	4		4	AXIN1	16	354475	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08		354475	90000278	431	6079											
WDR90	197335	broad.mit.edu	37	chr16	708613	708613	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccgccggccggaccatcaAggtgtgggactacgccacac	13	15	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	708613	G	G	708613	3	3	6	1	0	0	0	0	1	0	0	0	17464	72	3	5	2945	5	WDR90	16	708613	Missense_Mutation	SNP	A	TCGA-05-4389-01A-01D-1265-08	354138	708613	89646140	432	6080											
C16orf91	283951	broad.mit.edu	37	chr16	1470042	1470042	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgatggaatccttggacatCaagagccaggcgaggagcag	14	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1470042	G	G	1470042	1	3	6	0	1	0	0	0	0	0	0	0	1858	826	29	4		4	C16orf91	16	1470042	3'UTR	SNP	C	TCGA-05-4389-01A-01D-1265-08	761429	1470042	88884711	433	6081											
PKD1	5310	broad.mit.edu	37	chr16	2155892	2155892	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacggtgaccagggccaAcgagtactcgatgacgtgct	13	12	0	2	rs149467954	by1000genomes	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2155892	G	G	2155892	2	3	6	1	0	0	0	0	0	0	0	1	12058	40	2	5		5	PKD1	16	2155892	Silent	SNP	A	TCGA-05-4389-01A-01D-1265-08	685850	2155892	88198861	434	6082											
GLIS2	84662	broad.mit.edu	37	chr16	4382451	4382451	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctccaggctccccgccctCaggtactggccctgggcagg	12	18	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4382451	G	G	4382451	4	3	6	1	0	0	0	0	0	1	0	0	6510	838	29	4	172	4	GLIS2	16	4382451	Nonsense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2226559	4382451	85972302	435	6083											
ANKS3	124401	broad.mit.edu	37	chr16	4779940	4779940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatcgaagccatcactgcGctgctcaaaatgtgagagga	13	9	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4779940	T	T	4779940	1	4	6	0	1	0	0	0	0	0	0	0	690	1102	38	3		3	ANKS3	16	4779940	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	397489	4779940	85574813	436	6084											
NAGPA	51172	broad.mit.edu	37	chr16	5075361	5075362	+	3'UTR	DNP	CC	AA	AA													ctatcaggaacttggctgccCcacaggggctgaggacaccc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	5075362	AA	AA	5075361	1	1	6	0	1	0	0	0	0	0	0	0	10238	638	22	2		2	NAGPA	16	5075361	3'UTR	DNP	CC	TCGA-05-4389-01A-01D-1265-08	295421	5075361	85279392	437	6085											
MYH11	4629	broad.mit.edu	37	chr16	15813432	15813432	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaggctctcctagcaaggcGaggctttacctcttgtagct	11	11	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15813432	A	A	15813432	1	1	6	0	1	0	0	0	0	0	0	0	10125	1073	37	4		4	MYH11	16	15813432	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	10738071	15813432	74541321	438	6086											
PRKCB	5579	broad.mit.edu	37	chr16	23847552	23847552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgaggagagcaccgtgcGcttcgcccgcaaaggcgccc	16	15	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23847552	T	T	23847552	3	4	6	1	0	0	0	0	1	0	0	0	12614	1087	38	3	58	3	PRKCB	16	23847552	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	8034120	23847552	66507201	439	6087											
GTF3C1	2975	broad.mit.edu	37	chr16	27487750	27487750	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcccacatccccgctgtgCtgccgggcagccgacaccca	12	19	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27487750	T	T	27487750	1	4	6	0	1	0	0	0	0	0	0	0	6937	812	28	4		4	GTF3C1	16	27487750	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	3640198	27487750	62867003	440	6088											
ATP2A1	487	broad.mit.edu	37	chr16	28914369	28914369	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtccgagaaccagtcCctgctgcggatgccaccctg	11	16	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28914369	A	A	28914369	2	1	6	1	0	0	0	0	0	0	0	1	1140	610	22	2		2	ATP2A1	16	28914369	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	1426619	28914369	61440384	441	6089											
ABCC12	94160	broad.mit.edu	37	chr16	48119701	48119701	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattgattgcccccttctctTgcattcatcagcttgcttta	5	12	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48119701	A	A	48119701	1	1	6	0	1	0	0	0	0	0	0	0	52	1827	63	5		5	ABCC12	16	48119701	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	19205332	48119701	42235052	442	6090											
TK2	7084	broad.mit.edu	37	chr16	66551169	66551169	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actctgctcatggcttggaaGcaaagcaggcacacaggcaa	11	11	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66551169	A	A	66551169	1	1	6	0	1	0	0	0	0	0	0	0	16056	986	34	4		4	TK2	16	66551169	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	18431468	66551169	23803584	443	6091											
PLEKHG4	25894	broad.mit.edu	37	chr16	67314355	67314355	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacccaggtccaagcagggcGatgccatctggcttgagccc	13	14	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67314355	A	A	67314355	2	1	6	1	0	0	0	0	0	0	0	1	12166	1045	37	4		4	PLEKHG4	16	67314355	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	763186	67314355	23040398	444	6092											
ACD	65057	broad.mit.edu	37	chr16	67692308	67692308	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taggcacagccctctccgctCagggcagctgagtggcctgc	13	15	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67692308	G	G	67692308	1	3	6	0	1	0	0	0	0	0	0	0	135	841	29	4		4	ACD	16	67692308	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	377953	67692308	22662445	445	6093											
PMFBP1	83449	broad.mit.edu	37	chr16	72158704	72158704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttctcttttaaggcggCcatctcctcctggaactccc	9	14	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72158704	A	A	72158704	3	1	6	1	0	0	0	0	1	0	0	0	12229	739	26	3	552	3	PMFBP1	16	72158704	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	4466396	72158704	18196049	446	6094											
WWOX	51741	broad.mit.edu	37	chr16	78458910	78458910	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggatgttttgtgccgctCagctcctgcccgtgtcattg	11	13	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78458910	G	G	78458910	4	3	6	1	0	0	0	0	0	1	0	0	17541	838	29	4	837	4	WWOX	16	78458910	Nonsense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	6300206	78458910	11895843	447	6095											
OR1A1	8383	broad.mit.edu	37	chr17	3119530	3119530	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacctaggggttggcattTtctctgtgccattactatgc	10	9	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3119530	G	G	3119530	3	3	6	1	0	0	0	0	1	0	0	0	11043	1841	64	5	618	5	OR1A1	17	3119530	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08		3119530	78075680	448	6096											
VMO1	284013	broad.mit.edu	37	chr17	4689248	4689248	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaccttccagactgggactCtaccacgtgcgtattgccta	8	15	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4689248	G	G	4689248	3	3	6	1	0	0	0	0	1	0	0	0	17304	922	32	4	355	4	VMO1	17	4689248	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1569718	4689248	76505962	449	6097											
DNAH2	146754	broad.mit.edu	37	chr17	7636522	7636522	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctatatcccggccctgcttCggctgctcggtggagtcttt	11	14	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7636522	T	T	7636522	3	4	6	1	0	0	0	0	1	0	0	0	4642	875	31	4	531	4	DNAH2	17	7636522	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2947274	7636522	73558688	450	6098											
DNAH2	146754	broad.mit.edu	37	chr17	7640477	7640477	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcatgaagcccaaggacatCtctagcaagctccctaagct	7	13	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7640477	T	T	7640477	2	4	6	1	0	0	0	0	0	0	0	1	4642	903	32	4		4	DNAH2	17	7640477	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	3955	7640477	73554733	451	6099											
DNAH2	146754	broad.mit.edu	37	chr17	7644211	7644211	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccctggtgaaccgtgaacgGaacaagaaatggccagacct	12	11	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7644211	A	A	7644211	2	1	6	1	0	0	0	0	0	0	0	1	4642	1161	41	4		4	DNAH2	17	7644211	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	3734	7644211	73550999	452	6100											
DNAH2	146754	broad.mit.edu	37	chr17	7646444	7646444	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggagaaggcgggcatgctgGatgtcaactttgacaagtac	14	7	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7646444	C	C	7646444	3	2	6	1	0	0	0	0	1	0	0	0	4642	1174	41	4	1930	4	DNAH2	17	7646444	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2233	7646444	73548766	453	6101											
DHRS7C	201140	broad.mit.edu	37	chr17	9684874	9684874	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttctttccacacagcacCagccttgccccacctgtgtg	7	17	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9684874	T	T	9684874	2	4	6	1	0	0	0	0	0	0	0	1	4537	581	21	4		4	DHRS7C	17	9684874	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2038430	9684874	71510336	454	6102											
MYH8	4626	broad.mit.edu	37	chr17	10298621	10298621	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgctctgcattgtctcCacgactctagtgtggtttct	10	11	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10298621	A	A	10298621	2	1	6	1	0	0	0	0	0	0	0	1	10135	581	21	2		2	MYH8	17	10298621	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	613747	10298621	70896589	455	6103											
DNAH9	1770	broad.mit.edu	37	chr17	11597208	11597208	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctaaaaggtttgaaggcatCgacattgactttaaagagct	9	6	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11597208	T	T	11597208	2	4	6	1	0	0	0	0	0	0	0	1	4648	874	31	4		4	DNAH9	17	11597208	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	1298587	11597208	69598002	456	6104											
KSR1	8844	broad.mit.edu	37	chr17	25950344	25950344	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcctctttgcagcattAacagcagcaaagttgtaccc	7	11	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25950344	C	C	25950344	1	2	6	0	1	0	0	0	0	0	0	0	8653	377	13	5		5	KSR1	17	25950344	3'UTR	SNP	A	TCGA-05-4389-01A-01D-1265-08	14353136	25950344	55244866	457	6105											
TNFAIP1	7126	broad.mit.edu	37	chr17	26668549	26668549	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtactgcctgtactcccAgcacggtcggcgtgggtctg	15	12	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26668549	T	T	26668549	1	4	6	0	1	0	0	0	0	0	0	0	16395	203	7	5		5	TNFAIP1	17	26668549	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	718205	26668549	54526661	458	6106											
ANKRD13B	124930	broad.mit.edu	37	chr17	27936421	27936421	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgaaaagacggagatggtGaatgggtatgaagctaaggt	16	2	0	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27936421	A	A	27936421	2	1	6	1	0	0	0	0	0	0	0	1	642	1277	45	4		4	ANKRD13B	17	27936421	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1267872	27936421	53258789	459	6107											
CPD	1362	broad.mit.edu	37	chr17	28766191	28766191	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttagttttgaggaataAtaattatttttaaaacatgg	6	2	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28766191	G	G	28766191	1	3	6	0	1	0	0	0	0	0	0	0	3830	116	4	5		5	CPD	17	28766191	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	829770	28766191	52429019	460	6108											
ADAP2	55803	broad.mit.edu	37	chr17	29283319	29283319	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcagggatatgaagcctacGaagacctgcccaagggcatc	12	11	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29283319	A	A	29283319	3	1	6	1	0	0	0	0	1	0	0	0	280	1059	37	4	981	4	ADAP2	17	29283319	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	517128	29283319	51911891	461	6109											
NLE1	54475	broad.mit.edu	37	chr17	33462471	33462471	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcctctctggaccctggccCtaggggaggcagaaagcaca	13	13	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33462471	G	G	33462471	5	3	6	1	0	0	0	0	0	0	1	0	10555	695	24	4	462	4	NLE1	17	33462471	Splice_Site	SNP	C	TCGA-05-4389-01A-01D-1265-08	4179152	33462471	47732739	462	6110											
GAS2L2	246176	broad.mit.edu	37	chr17	34077194	34077197	+	Frame_Shift_Del	DEL	CCTC	-	-													cagctcccgccgcacctcctCctcgatctcctcctccagct							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34077197	-	-	34077194	7	5	6	1	0	1	0	1	0	0	0	0	6309	864	30	0	2133	0	GAS2L2	17	34077194	Frame_Shift_Del	DEL	CCTC	TCGA-05-4389-01A-01D-1265-08	614723	34077194	47118016	463	6111											
PLXDC1	57125	broad.mit.edu	37	chr17	37239790	37239790	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagctcctatgctgcaggCaggctgcaagagagaaggca	13	11	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37239790	G	G	37239790	3	3	6	1	0	0	0	0	1	0	0	0	12212	710	25	4	615	4	PLXDC1	17	37239790	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	3162596	37239790	43955420	464	6112											
KRT26	353288	broad.mit.edu	37	chr17	38926018	38926018	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacgtaccacagccatgagGgactgaagttctatttccag	9	11	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38926018	A	A	38926018	2	1	6	1	0	0	0	0	0	0	0	1	8534	1219	43	4		4	KRT26	17	38926018	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1686228	38926018	42269192	465	6113											
AARSD1	80755	broad.mit.edu	37	chr17	41131099	41131099	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaggacttgttgagtgattGaatattggctggaaaggagg	16	3	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41131099	A	A	41131099	1	1	6	0	1	0	0	0	0	0	0	0	21	1305	45	4		4	AARSD1	17	41131099	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2205081	41131099	40064111	466	6114											
KPNB1	3837	broad.mit.edu	37	chr17	45730302	45730302	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagaaatcgctttctcagAtcttttgctatttgcatggg	8	8	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45730302	G	G	45730302	1	3	6	0	1	0	0	0	0	0	0	0	8506	348	12	5		5	KPNB1	17	45730302	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	4599203	45730302	35464908	467	6115											
TAC4	255061	broad.mit.edu	37	chr17	47921423	47921423	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctccattgtcattgtcactCacctcccactcgcttcccca	4	19	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47921423	A	A	47921423	1	1	6	0	1	0	0	0	0	0	0	0	15619	841	29	3		3	TAC4	17	47921423	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2191121	47921423	33273787	468	6116											
TAC4	255061	broad.mit.edu	37	chr17	47925475	47925475	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttggctccttgagtgtaGataggggaaactccccctgt	11	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47925475	A	A	47925475	1	1	6	0	1	0	0	0	0	0	0	0	15619	957	33	4		4	TAC4	17	47925475	5'Flank	SNP	G	TCGA-05-4389-01A-01D-1265-08	4052	47925475	33269735	469	6117											
CA10	56934	broad.mit.edu	37	chr17	50212231	50212231	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaaccctgggctccttcTgactcaccattctccctcac	5	19	4	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50212231	G	G	50212231	1	3	6	0	1	0	0	0	0	0	0	0	2537	1595	55	5		5	CA10	17	50212231	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	2286756	50212231	30982979	470	6118											
ACE	1636	broad.mit.edu	37	chr17	61559074	61559074	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtgccacgcctcggcttggGacttctacaacaggaaagac	11	12	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61559074	C	C	61559074	3	2	6	1	0	0	0	0	1	0	0	0	136	1174	41	4	1119	4	ACE	17	61559074	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	11346843	61559074	19636136	471	6119											
ERN1	2081	broad.mit.edu	37	chr17	62130599	62130599	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccactgattctccccacccGggccgctggcctggtaaagt	11	16	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62130599	C	C	62130599	1	2	6	0	1	0	0	0	0	0	0	0	5279	1131	39	4		4	ERN1	17	62130599	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	571525	62130599	19064611	472	6120											
APOH	350	broad.mit.edu	37	chr17	64224325	64224325	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggacaggctgaaagaggGcacaaagcagatggttaaca	14	6	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64224325	A	A	64224325	1	1	6	0	1	0	0	0	0	0	0	0	806	1218	42	4		4	APOH	17	64224325	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	2093726	64224325	16970885	473	6121											
CACNG1	786	broad.mit.edu	37	chr17	65052056	65052056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttgaggcagcttttcCcccaaggcaaggtcaccgcc	10	16	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65052056	A	A	65052056	1	1	6	0	1	0	0	0	0	0	0	0	2582	638	22	2		2	CACNG1	17	65052056	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	827731	65052056	16143154	474	6122											
ABCA8	10351	broad.mit.edu	37	chr17	66883575	66883575	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagaagtacagggaaacatCcaccagcgcctgcccaaacc	8	15	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66883575	T	T	66883575	3	4	6	1	0	0	0	0	1	0	0	0	38	855	30	4	1712	4	ABCA8	17	66883575	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1831519	66883575	14311635	475	6123											
OTOP2	92736	broad.mit.edu	37	chr17	72921880	72921880	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggagacctgagctccatcCgcctcgtatcctgagctatt	9	14	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72921880	T	T	72921880	1	4	6	0	1	0	0	0	0	0	0	0	11400	667	23	4		4	OTOP2	17	72921880	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	6038305	72921880	8273330	476	6124											
ST6GALNAC2	10610	broad.mit.edu	37	chr17	74570505	74570505	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttggctcaggcggtcccaGagcgctggggtgaagaggtc	18	9	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74570505	C	C	74570505	2	2	6	1	0	0	0	0	0	0	0	1	15342	929	33	4		4	ST6GALNAC2	17	74570505	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	1648625	74570505	6624705	477	6125											
ENGASE	64772	broad.mit.edu	37	chr17	77073539	77073539	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgaagaagaagagacagtCtttcgagaggtggtcagttt	14	4	2	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77073539	G	G	77073539	2	3	6	1	0	0	0	0	0	0	0	1	5160	900	32	4		4	ENGASE	17	77073539	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2503034	77073539	4121671	478	6126											
GAA	2548	broad.mit.edu	37	chr17	78085902	78085902	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccatcgcctcccacaggtGagggccacgtcccgccccac	10	20	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78085902	A	A	78085902	1	1	6	0	1	0	0	0	0	0	0	0	6207	1305	45	4		4	GAA	17	78085902	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1012363	78085902	3109308	479	6127											
RPTOR	57521	broad.mit.edu	37	chr17	78857325	78857325	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccccagagctcacccttGgcattgcagaggagctgggc	13	14	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78857325	A	A	78857325	1	1	6	0	1	0	0	0	0	0	0	0	13776	1363	47	4		4	RPTOR	17	78857325	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	771423	78857325	2337885	480	6128											
CSNK1D	1453	broad.mit.edu	37	chr17	80223453	80223453	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggagaacacttccctcCcttttgcccagaaccagttt	8	13	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80223453	T	T	80223453	1	4	6	0	1	0	0	0	0	0	0	0	3986	638	22	4		4	CSNK1D	17	80223453	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	1366128	80223453	971757	481	6129											
DLGAP1	9229	broad.mit.edu	37	chr18	3977814	3977814	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtcagaggcgacaacctgGtgctcagtgtagcccaggat	13	10	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3977814	A	A	3977814	1	1	6	0	1	0	0	0	0	0	0	0	4599	1276	44	4		4	DLGAP1	18	3977814	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08		3977814	74099434	482	6130											
CEP192	55125	broad.mit.edu	37	chr18	13049425	13049425	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataacagtgcagtagttgatGtgaagacatgttccattgac	10	6	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13049425	A	A	13049425	3	1	6	1	0	0	0	0	1	0	0	0	3281	1377	48	4	2693	4	CEP192	18	13049425	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	9071611	13049425	65027823	483	6131											
ABHD3	171586	broad.mit.edu	37	chr18	19263385	19263385	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacatacaaaattgtttcaTgacaaatgtaaatttcataa	4	5	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19263385	A	A	19263385	1	1	6	0	1	0	0	0	0	0	0	0	83	1479	51	5		5	ABHD3	18	19263385	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	6213960	19263385	58813863	484	6132											
TTC39C	125488	broad.mit.edu	37	chr18	21644065	21644065	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaaattttacagtgaaaaTaattgtattttgtgtgtgtg	8	1	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21644065	A	A	21644065	1	1	6	0	1	0	0	0	0	0	0	0	16835	1421	49	5		5	TTC39C	18	21644065	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	2380680	21644065	56433183	485	6133											
OSBPL1A	114876	broad.mit.edu	37	chr18	21747192	21747192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctcaggatgccaacctgCctgtctccatgctgcctggg	13	14	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21747192	T	T	21747192	1	4	6	0	1	0	0	0	0	0	0	0	11371	754	26	4		4	OSBPL1A	18	21747192	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	103127	21747192	56330056	486	6134											
IMPACT	55364	broad.mit.edu	37	chr18	22010467	22010467	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagctacttctgctttaAcaaaaaggactcacttgaag	6	8	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22010467	T	T	22010467	1	4	6	0	1	0	0	0	0	0	0	0	7794	58	2	5		5	IMPACT	18	22010467	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	263275	22010467	56066781	487	6135											
KIAA1012	22878	broad.mit.edu	37	chr18	29437671	29437671	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctctggttgacttcctgtgCcaatgccaaagtctacagaa	8	12	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29437671	G	G	29437671	3	3	6	1	0	0	0	0	1	0	0	0	8274	739	26	4	1327	4	KIAA1012	18	29437671	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	7427204	29437671	48639577	488	6136											
PIK3C3	5289	broad.mit.edu	37	chr18	39535150	39535151	+	5'Flank	INS	-	G	G													tggattggcggcttgctggcINSgggggcggaaccggaagttc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39535151	G	G	39535150	6	5	6	0	1	1	1	0	0	0	0	0	12007	783	27	0		0	PIK3C3	18	39535150	5'Flank	INS	-	TCGA-05-4389-01A-01D-1265-08	10097479	39535150	38542098	489	6137											
SYT4	6860	broad.mit.edu	37	chr18	40850212	40850212	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacaacaacaaaaaggtaGcttgatttcccaagcttgca	6	10	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40850212	A	A	40850212	1	1	6	0	1	0	0	0	0	0	0	0	15595	986	34	4		4	SYT4	18	40850212	3'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08	1315062	40850212	37227036	490	6138											
SLC14A1	6563	broad.mit.edu	37	chr18	43329695	43329695	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgccttgtgcagctcagcTgtcagatgggatctgaaagg	14	8	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43329695	A	A	43329695	1	1	6	0	1	0	0	0	0	0	0	0	14509	1595	55	5		5	SLC14A1	18	43329695	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	2479483	43329695	34747553	491	6139											
ST8SIA5	29906	broad.mit.edu	37	chr18	44268875	44268875	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcgttgcagcacctggacaGagtagacctgccaggcaggg	16	11	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44268875	C	C	44268875	3	2	6	1	0	0	0	0	1	0	0	0	15353	933	33	4	827	4	ST8SIA5	18	44268875	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	939180	44268875	33808373	492	6140											
TCEB3C	162699	broad.mit.edu	37	chr18	44555306	44555306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttcctcctggagcgctGgcgcggagagtgcttctggg	16	12	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44555306	T	T	44555306	3	4	6	1	0	0	0	0	1	0	0	0	15805	1348	47	2	2379	2	TCEB3C	18	44555306	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	286431	44555306	33521942	493	6141											
DYM	54808	broad.mit.edu	37	chr18	46956785	46956785	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctagcttaagcagataaTttgtccttaaacctgcattt	5	9	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46956785	A	A	46956785	1	1	6	0	1	0	0	0	0	0	0	0	4880	1508	52	5		5	DYM	18	46956785	5'UTR	SNP	T	TCGA-05-4389-01A-01D-1265-08	2401479	46956785	31120463	494	6142											
RTTN	25914	broad.mit.edu	37	chr18	67697257	67697257	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaatgttaccttttttttCaatgctgctttcccaggcct	6	11	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67697257	T	T	67697257	2	4	6	1	0	0	0	0	0	0	0	1	13848	825	29	4		4	RTTN	18	67697257	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	20740472	67697257	10379991	495	6143											
CNDP1	84735	broad.mit.edu	37	chr18	72238504	72238504	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgatctggttgctcttctCggtaatgccttattttgttt	9	8	3	1	rs148458615	byFrequency	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72238504	T	T	72238504	2	4	6	1	0	0	0	0	0	0	0	1	3625	898	31	4		4	CNDP1	18	72238504	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	4541247	72238504	5838744	496	6144											
ZNF559	84527	broad.mit.edu	37	chr19	9452759	9452759	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaatttatggtggagagaGaccatatactcataaggagt	11	4	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9452759	C	C	9452759	3	2	6	1	0	0	0	0	1	0	0	0	18117	942	33	4	646	4	ZNF559	19	9452759	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08		9452759	49676224	497	6145											
ZNF560	147741	broad.mit.edu	37	chr19	9583939	9583939	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaagagctgaaatccttTacatgaagaaatgatacatt	6	5	0	5			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9583939	C	C	9583939	1	2	6	0	1	0	0	0	0	0	0	0	18118	1769	61	5		5	ZNF560	19	9583939	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	131180	9583939	49545044	498	6146											
ZNF562	54811	broad.mit.edu	37	chr19	9771350	9771350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcttatgttgtggagggCgacctaaagcagaatctctg	12	8	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9771350	A	A	9771350	1	1	6	0	1	0	0	0	0	0	0	0	18120	783	27	3		3	ZNF562	19	9771350	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	187411	9771350	49357633	499	6147											
COL5A3	50509	broad.mit.edu	37	chr19	10108655	10108655	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggaaacacagccatgaCttacttggggtcctggggct	13	9	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10108655	T	T	10108655	1	4	6	0	1	0	0	0	0	0	0	0	3730	580	20	4		4	COL5A3	19	10108655	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	337305	10108655	49020328	500	6148											
CDC37	11140	broad.mit.edu	37	chr19	10503746	10503746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgccgggaaggcatggggCgcgggggttactcacggtgg	20	11	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10503746	A	A	10503746	1	1	6	0	1	0	0	0	0	0	0	0	3098	783	27	3		3	CDC37	19	10503746	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	395091	10503746	48625237	501	6149											
KEAP1	9817	broad.mit.edu	37	chr19	10602840	10602840	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acccagttgatgcaggcgtgGaagacctcggactcgcagcg	14	12	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10602840	C	C	10602840	3	2	6	1	0	0	0	0	1	0	0	0	8211	1165	41	4	1152	4	KEAP1	19	10602840	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	99094	10602840	48526143	502	6150											
CARM1	10498	broad.mit.edu	37	chr19	11022908	11022908	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatcctgtcgttttttgccGcccaagctggagcacggaaa	12	11	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11022908	C	C	11022908	3	2	6	1	0	0	0	0	1	0	0	0	2681	1087	38	4	625	4	CARM1	19	11022908	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	420068	11022908	48106075	503	6151											
CC2D1A	54862	broad.mit.edu	37	chr19	14024056	14024056	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgctctatcagacagcaattGaaagcgccagacaagctgga	10	11	2	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14024056	A	A	14024056	3	1	6	1	0	0	0	0	1	0	0	0	2752	1291	45	4	472	4	CC2D1A	19	14024056	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	3001148	14024056	45104927	504	6152											
AKAP8	10270	broad.mit.edu	37	chr19	15469932	15469932	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagattaaggaagagaataaAccagccaggctctgccgagt	11	8	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15469932	C	C	15469932	1	2	6	0	1	0	0	0	0	0	0	0	457	58	2	5		5	AKAP8	19	15469932	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	1445876	15469932	43659051	505	6153											
GPI	2821	broad.mit.edu	37	chr19	34868423	34868423	+	Missense_Mutation	SNP	G	T	T													gccagcgtgtccggagcggtGactggaaggggtacacaggc							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34868423	T	T	34868423	3	4	6	1	0	0	0	0	1	0	0	0	6676	1290	45	3	557	3	GPI	19	34868423	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	19398491	34868423	24260560	506	6154	21	2									
GPI	2821	broad.mit.edu	37	chr19	34868425	34868425	+	Silent	SNP	C	T	T													cagcgtgtccggagcggtgaCtggaaggggtacacaggcaa					rs11548997		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34868425	T	T	34868425	2	4	6	1	0	0	0	0	0	0	0	1	6676	564	20	4		4	GPI	19	34868425	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2	34868425	24260558	507	6155	21	2									
MAG	4099	broad.mit.edu	37	chr19	35803291	35803291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggccctggggttggcgtGcatgtccgtgtgtccctgtc	16	11	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35803291	T	T	35803291	1	4	6	0	1	0	0	0	0	0	0	0	9250	1334	46	3		3	MAG	19	35803291	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	934866	35803291	23325692	508	6156											
ARHGAP33	115703	broad.mit.edu	37	chr19	36272255	36272255	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacagttaccaggagtcagGagtggcaggatcaaggctgg	15	8	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36272255	T	T	36272255	1	4	6	0	1	0	0	0	0	0	0	0	884	1189	41	3		3	ARHGAP33	19	36272255	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	468964	36272255	22856728	509	6157											
KCNK6	9424	broad.mit.edu	37	chr19	38817502	38817502	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcccacctcgaggagGcctggagcttcttggatgcc	12	13	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38817502	A	A	38817502	3	1	6	1	0	0	0	0	1	0	0	0	8140	1203	42	4	598	4	KCNK6	19	38817502	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2545247	38817502	20311481	510	6158											
RYR1	6261	broad.mit.edu	37	chr19	39023335	39023335	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccacctggaggagggagggGagaacggtgaagctgaagag	20	6	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39023335	A	A	39023335	3	1	6	1	0	0	0	0	1	0	0	0	13879	1175	41	4	11528	4	RYR1	19	39023335	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	205833	39023335	20105648	511	6159											
LGALS14	56891	broad.mit.edu	37	chr19	40197357	40197357	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggggtggaggagagaaggGagaatatttgctaagggttt	19	1	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40197357	A	A	40197357	1	1	6	0	1	0	0	0	0	0	0	0	8813	1189	41	4		4	LGALS14	19	40197357	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1174022	40197357	18931626	512	6160											
C19orf61	56006	broad.mit.edu	37	chr19	44237005	44237005	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaccccctctgcaaagagctCttaccagttcttctcggtga	8	14	4	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44237005	G	G	44237005	1	3	6	0	1	0	0	0	0	0	0	0	1962	928	32	4		4	C19orf61	19	44237005	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	4039648	44237005	14891978	513	6161											
ERCC2	2068	broad.mit.edu	37	chr19	45867916	45867916	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcacaggcagacacagGccaggcagaagtatgagcag	14	11	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45867916	A	A	45867916	1	1	6	0	1	0	0	0	0	0	0	0	5255	1218	42	4		4	ERCC2	19	45867916	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1630911	45867916	13261067	514	6162											
MEIS3	56917	broad.mit.edu	37	chr19	47912846	47912846	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagtgccaaggcggccgggCgcagtggctcacgcctgtaa	15	12	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47912846	T	T	47912846	1	4	6	0	1	0	0	0	0	0	0	0	9562	783	27	4		4	MEIS3	19	47912846	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2044930	47912846	11216137	515	6163											
FAM83E	54854	broad.mit.edu	37	chr19	49116501	49116501	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcaggtctggaacgcctcCgcgcccttgctcaacagagc	11	16	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49116501	T	T	49116501	2	4	6	1	0	0	0	0	0	0	0	1	5690	639	23	4		4	FAM83E	19	49116501	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	1203655	49116501	10012482	516	6164											
DHDH	27294	broad.mit.edu	37	chr19	49447491	49447491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctccccggggatggacaGggcaagctcttagccaccag	13	13	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49447491	T	T	49447491	1	4	6	0	1	0	0	0	0	0	0	0	4519	1015	35	2		2	DHDH	19	49447491	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	330990	49447491	9681492	517	6165											
NTF4	4909	broad.mit.edu	37	chr19	49564715	49564715	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggccctgggcatcagcggtCaatgcccgcacataggactg	13	14	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49564715	G	G	49564715	3	3	6	1	0	0	0	0	1	0	0	0	10792	825	29	4	96	4	NTF4	19	49564715	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	117224	49564715	9564268	518	6166											
MYH14	79784	broad.mit.edu	37	chr19	50720868	50720868	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctcccctctcacccactGcagacgtactccggcctttt	5	20	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50720868	A	A	50720868	1	1	6	0	1	0	0	0	0	0	0	0	10127	1334	46	4		4	MYH14	19	50720868	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1156153	50720868	8408115	519	6167											
PPP2R1A	5518	broad.mit.edu	37	chr19	52719224	52719224	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaactagcacatcaggtctCacttccctttgcctccctct	6	16	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52719224	G	G	52719224	1	3	6	0	1	0	0	0	0	0	0	0	12483	841	29	4		4	PPP2R1A	19	52719224	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	1998356	52719224	6409759	520	6168											
LENG1	79165	broad.mit.edu	37	chr19	54663367	54663367	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcccgggcctgggcctcgtCacgccgcacgcgggcgacat	14	18	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54663367	T	T	54663367	3	4	6	1	0	0	0	0	1	0	0	0	8795	826	29	4	743	4	LENG1	19	54663367	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1944143	54663367	4465616	521	6169											
LILRA6	79168	broad.mit.edu	37	chr19	54751042	54751042	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtgccctgatcccaccctCggtgggcccacaggttcccc	11	18	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54751042	T	T	54751042	1	4	6	0	1	0	0	0	0	0	0	0	8861	899	31	4		4	LILRA6	19	54751042	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	87675	54751042	4377941	522	6170											
EPS8L1	54869	broad.mit.edu	37	chr19	55591235	55591235	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggtgccggggggcacgTgggtgggaggagtgtctggg	23	7	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55591235	A	A	55591235	1	1	6	0	1	0	0	0	0	0	0	0	5237	1711	59	5		5	EPS8L1	19	55591235	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	840193	55591235	3537748	523	6171											
TMEM190	147744	broad.mit.edu	37	chr19	55889574	55889574	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggaagaggaggattagggGagtccccgggggactgctca	19	7	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55889574	C	C	55889574	1	2	6	0	1	0	0	0	0	0	0	0	16237	1189	41	4		4	TMEM190	19	55889574	3'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08	298339	55889574	3239409	524	6172											
ZNF544	27300	broad.mit.edu	37	chr19	58773673	58773673	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaacctcgtcatacatcaGagaattcatactggagagaa	7	9	4	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58773673	C	C	58773673	3	2	6	1	0	0	0	0	1	0	0	0	18104	933	33	4	1715	4	ZNF544	19	58773673	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2884099	58773673	355310	525	6173											
ZNF324	25799	broad.mit.edu	37	chr19	58983439	58983439	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtctgttgccggggcatCatcagaaggtgcgccagcga	15	11	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58983439	T	T	58983439	3	4	6	1	0	0	0	0	1	0	0	0	17970	838	29	4	1590	4	ZNF324	19	58983439	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	209766	58983439	145544	526	6174											
HSPA12B	116835	broad.mit.edu	37	chr20	3726567	3726567	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccctcctgtaccaggagctGagggagcagagcccatcgct	12	15	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3726567	T	T	3726567	2	4	6	1	0	0	0	0	0	0	0	1	7474	1277	45	3		3	HSPA12B	20	3726567	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08		3726567	59298953	527	6175											
MAVS	57506	broad.mit.edu	37	chr20	3845224	3845224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaagtgcctgccaaccCagcatctgtcagcacagtgc	9	15	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3845224	T	T	3845224	3	4	6	1	0	0	0	0	1	0	0	0	9430	594	21	4	965	4	MAVS	20	3845224	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	118657	3845224	59180296	528	6176											
GPCPD1	56261	broad.mit.edu	37	chr20	5539550	5539550	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttagaaaacactgaaagtAtaaagaaaacaaacgaggcc	7	6	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5539550	T	T	5539550	1	4	6	0	1	0	0	0	0	0	0	0	6668	464	16	5		5	GPCPD1	20	5539550	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	1694326	5539550	57485970	529	6177											
SPTLC3	55304	broad.mit.edu	37	chr20	13053003	13053003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccatctgcagtgccccaGggcctctgtttgatttgatg	12	12	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13053003	T	T	13053003	3	4	6	1	0	0	0	0	1	0	0	0	15243	1000	35	2	413	2	SPTLC3	20	13053003	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	7513453	13053003	49972517	530	6178											
SLC24A3	57419	broad.mit.edu	37	chr20	19566233	19566233	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcaaaatgtgacattgggGaaaggggaggcatggagttt	17	3	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19566233	A	A	19566233	1	1	6	0	1	0	0	0	0	0	0	0	14581	1189	41	4		4	SLC24A3	20	19566233	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	6513230	19566233	43459287	531	6179											
PXMP4	11264	broad.mit.edu	37	chr20	32302524	32302525	+	Missense_Mutation	DNP	CC	AA	AA													atgaccagcgcgtgaggggcCcggattttggctccatagct					rs142263400		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32302525	AA	AA	32302524	3	1	6	1	0	0	0	0	1	0	0	0	12959	610	22	2	518	2	PXMP4	20	32302524	Missense_Mutation	DNP	CC	TCGA-05-4389-01A-01D-1265-08	12736291	32302524	30722996	532	6180											
GSS	2937	broad.mit.edu	37	chr20	33523460	33523460	+	Intron	SNP	G	A	A													ccatccctggaacacaggatGgagaaggctgctgtgttaaa							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33523460	A	A	33523460	1	1	6	0	1	0	0	0	0	0	0	0	6895	1363	47	4		4	GSS	20	33523460	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1220936	33523460	29502060	533	6181	22	2									
GSS	2937	broad.mit.edu	37	chr20	33523462	33523462	+	Intron	SNP	A	G	G													atccctggaacacaggatggAgaaggctgctgtgttaaatt							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33523462	G	G	33523462	1	3	6	0	1	0	0	0	0	0	0	0	6895	319	11	5		5	GSS	20	33523462	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	2	33523462	29502058	534	6182	22	2									
CEP250	11190	broad.mit.edu	37	chr20	34082306	34082306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggagcatcttcccaccgGccccctgccctgccatcttg	9	18	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34082306	T	T	34082306	1	4	6	0	1	0	0	0	0	0	0	0	3282	1218	42	3		3	CEP250	20	34082306	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	558844	34082306	28943214	535	6183											
RBM12	10137	broad.mit.edu	37	chr20	34240421	34240421	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacagcaatatgaagatctAccctataaaaaatgatgtga	6	7	2	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34240421	C	C	34240421	1	2	6	0	1	0	0	0	0	0	0	0	13221	406	14	5		5	RBM12	20	34240421	3'UTR	SNP	A	TCGA-05-4389-01A-01D-1265-08	158115	34240421	28785099	536	6184											
KIAA0406	9675	broad.mit.edu	37	chr20	36641892	36641892	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacagccgcaggtttttgGgagctgggtgaatacagaca	14	8	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36641892	A	A	36641892	2	1	6	1	0	0	0	0	0	0	0	1	8243	1219	43	4		4	KIAA0406	20	36641892	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	2401471	36641892	26383628	537	6185											
SFRS6	6431	broad.mit.edu	37	chr20	42088436	42088436	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaggtggatacagcagtcgGagaacatctggcagagacaa	15	7	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42088436	C	C	42088436	2	2	6	1	0	0	0	0	0	0	0	1	14294	1161	41	4		4	SFRS6	20	42088436	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	5446544	42088436	20937084	538	6186											
WFDC12	128488	broad.mit.edu	37	chr20	43752329	43752329	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtaccgtccctggggtctgGactttttgtgactcttccct	10	12	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43752329	T	T	43752329	1	4	6	0	1	0	0	0	0	0	0	0	17477	1189	41	3		3	WFDC12	20	43752329	3'UTR	SNP	G	TCGA-05-4389-01A-01D-1265-08	1663893	43752329	19273191	539	6187											
MMP9	4318	broad.mit.edu	37	chr20	44644771	44644771	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggggatggaggtgatatgTgaaaaccttagaaagttcta	15	3	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44644771	A	A	44644771	1	1	6	0	1	0	0	0	0	0	0	0	9763	1711	59	5		5	MMP9	20	44644771	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	892442	44644771	18380749	540	6188											
SULF2	55959	broad.mit.edu	37	chr20	46319006	46319006	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacgtgcggaagaagctcaCgctgtcattggtgatgaggt	16	7	2	3	rs149783473		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46319006	T	T	46319006	3	4	6	1	0	0	0	0	1	0	0	0	15489	536	19	4	2079	4	SULF2	20	46319006	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	1674235	46319006	16706514	541	6189											
SPATA2	9825	broad.mit.edu	37	chr20	48523254	48523254	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accatcttcacctggagggtCtccacgagctctctgagctt	9	14	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48523254	T	T	48523254	2	4	6	1	0	0	0	0	0	0	0	1	15121	912	32	4		4	SPATA2	20	48523254	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	2204248	48523254	14502266	542	6190											
ZFP64	55734	broad.mit.edu	37	chr20	50705467	50705467	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagtggttatagaagtactCaggataagaagtggcagctg	14	5	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50705467	A	A	50705467	1	1	6	0	1	0	0	0	0	0	0	0	17778	841	29	3		3	ZFP64	20	50705467	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	2182213	50705467	12320053	543	6191											
CYP24A1	1591	broad.mit.edu	37	chr20	52788039	52788039	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttttcctttgttcttTgtagctgtgacttgaagctc	7	8	2	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52788039	C	C	52788039	1	2	6	0	1	0	0	0	0	0	0	0	4187	1827	63	5		5	CYP24A1	20	52788039	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	2082572	52788039	10237481	544	6192											
PHACTR3	116154	broad.mit.edu	37	chr20	58330098	58330098	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacttggagagggactccTagggtgtgtggtgaggggga	20	5	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58330098	C	C	58330098	1	2	6	0	1	0	0	0	0	0	0	0	11906	1537	53	5		5	PHACTR3	20	58330098	Intron	SNP	T	TCGA-05-4389-01A-01D-1265-08	5542059	58330098	4695422	545	6193											
KCNQ2	3785	broad.mit.edu	37	chr20	62073780	62073780	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccccaccagagtgcatcCgcgtaggtgtcaaagtggtc	13	12	1	1	rs148654588		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62073780	T	T	62073780	2	4	6	1	0	0	0	0	0	0	0	1	8153	639	23	4		4	KCNQ2	20	62073780	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	3743682	62073780	951740	546	6194											
TPTE	7179	broad.mit.edu	37	chr21	10934006	10934006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcccaatatatttagccCtcttctgatagtcaatttag	5	10	3	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934006	A	A	10934006	1	1	6	0	1	0	0	0	0	0	0	0	16554	696	24	2		2	TPTE	21	10934006	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08		10934006	37195889	547	6195											
TPTE	7179	broad.mit.edu	37	chr21	10951323	10951323	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaataaggcaatagctagaGaaatagaacgatactccaaa	7	6	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10951323	A	A	10951323	3	1	6	1	0	0	0	0	1	0	0	0	16554	942	33	4	1326	4	TPTE	21	10951323	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	17317	10951323	37178572	548	6196											
LIPI	149998	broad.mit.edu	37	chr21	15558463	15558463	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcatgcccccctcatatatCgacatttcaaaattcattat	2	12	4	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15558463	T	T	15558463	1	4	6	0	1	0	0	0	0	0	0	0	8898	899	31	4		4	LIPI	21	15558463	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	4607140	15558463	32571432	549	6197											
TMPRSS15	5651	broad.mit.edu	37	chr21	19737487	19737487	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actggcagacaacacttgttTcagaaggttttggataatga	10	6	1	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19737487	A	A	19737487	3	1	6	1	0	0	0	0	1	0	0	0	16369	1783	62	5	2392	5	TMPRSS15	21	19737487	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	4179024	19737487	28392408	550	6198											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31812989	31812989	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcactggcttccaatctcTggactgtgggtccagcttct	10	12	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31812989	C	C	31812989	3	2	6	1	0	0	0	0	1	0	0	0	8597	1580	55	5	346	5	KRTAP15-1	21	31812989	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	12075502	31812989	16316906	551	6199											
SMTN	6525	broad.mit.edu	37	chr22	31486831	31486831	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccaacgctccctgtcGgtgctcagcccccgccaacc	8	22	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31486831	T	T	31486831	2	4	6	1	0	0	0	0	0	0	0	1	14928	1103	39	1		1	SMTN	22	31486831	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08		31486831	19817735	552	6200											
LIMK2	3985	broad.mit.edu	37	chr22	31658126	31658126	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgtctggcccagggtcaaCcggatgcacatcagtcccaa	10	14	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31658126	G	G	31658126	3	3	6	1	0	0	0	0	1	0	0	0	8874	506	18	4	637	4	LIMK2	22	31658126	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	171295	31658126	19646440	553	6201											
LARGE	9215	broad.mit.edu	37	chr22	33700318	33700318	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgttgcgcagcaggttcaCggggtagaactggccctcct	13	13	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33700318	T	T	33700318	3	4	6	1	0	0	0	0	1	0	0	0	8699	536	19	4	659	4	LARGE	22	33700318	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	2042192	33700318	17604248	554	6202											
ISX	91464	broad.mit.edu	37	chr22	35463277	35463277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcggcctcaggctctgGgctagaaaagcctccaaagg	13	12	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35463277	T	T	35463277	3	4	6	1	0	0	0	0	1	0	0	0	7935	1232	43	2	199	2	ISX	22	35463277	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	1762959	35463277	15841289	555	6203											
APOL3	80833	broad.mit.edu	37	chr22	36541433	36541433	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagagggggctgcctggagGaggtgtgcctgccagagaaa	19	8	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36541433	A	A	36541433	1	1	6	0	1	0	0	0	0	0	0	0	809	1189	41	4		4	APOL3	22	36541433	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	1078156	36541433	14763133	556	6204											
MPPED1	758	broad.mit.edu	37	chr22	43831155	43831155	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggtccctcctgccccgGgcgggcggctgtgctgagca	17	14	0	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43831155	A	A	43831155	1	1	6	0	1	0	0	0	0	0	0	0	9835	1247	43	4		4	MPPED1	22	43831155	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	7289722	43831155	7473411	557	6205											
EFCAB6	64800	broad.mit.edu	37	chr22	43933318	43933318	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttctccttgcattctttCaggagctggcgccagcagcc	9	15	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43933318	G	G	43933318	2	3	6	1	0	0	0	0	0	0	0	1	4979	813	29	4		4	EFCAB6	22	43933318	Silent	SNP	C	TCGA-05-4389-01A-01D-1265-08	102163	43933318	7371248	558	6206											
KIAA1644	85352	broad.mit.edu	37	chr22	44692714	44692714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggaagccaaagtggtagCggcctttgtggtctgtgtat	15	6	1	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44692714	T	T	44692714	3	4	6	1	0	0	0	0	1	0	0	0	8320	768	27	4	492	4	KIAA1644	22	44692714	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	759396	44692714	6611852	559	6207											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45244880	45244880	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcctgaagaccttcctgCgagagctgccccagccgctt	10	15	0	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45244880	T	T	45244880	4	4	6	1	0	0	0	0	0	1	0	0	12707	760	27	4	1233	4	PRR5-ARHGAP8	22	45244880	Nonsense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	552166	45244880	6059686	560	6208											
PHF21B	112885	broad.mit.edu	37	chr22	45289361	45289361	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccaggaggccgctgtaGgcagggttggctgtgcttct	16	10	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45289361	T	T	45289361	2	4	6	1	0	0	0	0	0	0	0	1	11929	987	35	2		2	PHF21B	22	45289361	Silent	SNP	G	TCGA-05-4389-01A-01D-1265-08	44481	45289361	6015205	561	6209											
PPP2R3B	28227	broad.mit.edu	37	chrX	307653	307653	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcccgtgagggatgaggcGtatggtgtagacgccggccc	16	12	0	3			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	307653	A	A	307653	1	1	6	0	1	0	0	0	0	0	0	0	12490	1160	40	4		4	PPP2R3B	23	307653	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08		307653	154962907	562	6210											
CD99	4267	broad.mit.edu	37	chrX	2640679	2640679	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttcctaggtagcttttcaGatgctgaccttgcggatggc	11	10	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2640679	T	T	2640679	3	4	6	1	0	0	0	0	1	0	0	0	3080	942	33	3	296	3	CD99	23	2640679	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	2333026	2640679	152629881	563	6211											
FRMPD4	9758	broad.mit.edu	37	chrX	12601557	12601557	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatggcttccagcagccgcGtctggacctggaacacctct	10	15	2	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12601557	A	A	12601557	1	1	6	0	1	0	0	0	0	0	0	0	6119	1160	40	4		4	FRMPD4	23	12601557	Intron	SNP	G	TCGA-05-4389-01A-01D-1265-08	9960878	12601557	142669003	564	6212											
CXorf58	254158	broad.mit.edu	37	chrX	23945586	23945586	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttttattatggtaaaatAtaacacaatataaaatttat	2	3	0	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23945586	G	G	23945586	1	3	6	0	1	0	0	0	0	0	0	0	4147	464	16	5		5	CXorf58	23	23945586	Intron	SNP	A	TCGA-05-4389-01A-01D-1265-08	11344029	23945586	131324974	565	6213											
DMD	1756	broad.mit.edu	37	chrX	32563307	32563307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaatccacagtaatctGcctcttcttttggggaggtg	10	9	4	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32563307	T	T	32563307	3	4	6	1	0	0	0	0	1	0	0	0	4620	1328	46	3	9415	3	DMD	23	32563307	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	8617721	32563307	122707253	566	6214											
CACNA1F	778	broad.mit.edu	37	chrX	49070609	49070609	+	Intron	DEL	G	-	-													tggtgggtggggctagagaaGgggggccaccttgggcttga							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49070609	-	-	49070609	6	5	6	0	1	1	0	1	0	0	0	0	2569	1015	35	0		0	CACNA1F	23	49070609	Intron	DEL	G	TCGA-05-4389-01A-01D-1265-08	16507302	49070609	106199951	567	6215											
PJA1	64219	broad.mit.edu	37	chrX	68382049	68382049	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaagtcagggtcggccaTggtgcgtcgtcgtctcggca	15	12	2	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68382049	G	G	68382049	3	3	6	1	0	0	0	0	1	0	0	0	12056	1464	51	5	902	5	PJA1	23	68382049	Missense_Mutation	SNP	T	TCGA-05-4389-01A-01D-1265-08	19311440	68382049	86888511	568	6216											
CDX4	1046	broad.mit.edu	37	chrX	72667133	72667133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaagcaggcatgtaccCgggcactctcatgagccctg	12	12	1	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667133	A	A	72667133	3	1	6	1	0	0	0	0	1	0	0	0	3214	652	23	1	46	1	CDX4	23	72667133	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	4285084	72667133	82603427	569	6217											
TBX22	50945	broad.mit.edu	37	chrX	79283520	79283520	+	Frame_Shift_Del	DEL	C	-	-													gatgggcttttagagacctaCccatggaggccttctttcac							TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79283520	-	-	79283520	7	5	6	1	0	1	0	1	0	0	0	0	15780	518	18	0	920	0	TBX22	23	79283520	Frame_Shift_Del	DEL	C	TCGA-05-4389-01A-01D-1265-08	6616387	79283520	75987040	570	6218											
CENPI	2491	broad.mit.edu	37	chrX	100416449	100416449	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgtactaaccaagtatttCtatcaccatatctccccact	2	13	3	0			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100416449	G	G	100416449	1	3	6	0	1	0	0	0	0	0	0	0	3263	928	32	4		4	CENPI	23	100416449	Intron	SNP	C	TCGA-05-4389-01A-01D-1265-08	21132929	100416449	54854111	571	6219											
GPRASP1	9737	broad.mit.edu	37	chrX	101909099	101909099	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaaggcaatacctgtttcAcgatttaaggaagaagccca	9	10	1	1			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101909099	C	C	101909099	2	2	6	1	0	0	0	0	0	0	0	1	6788	146	6	5		5	GPRASP1	23	101909099	Silent	SNP	A	TCGA-05-4389-01A-01D-1265-08	1492650	101909099	53361461	572	6220											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685831	125685831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggttgatgatggccctgGggatggcctccacatccctc	14	12	0	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125685831	T	T	125685831	3	4	6	1	0	0	0	0	1	0	0	0	4297	1232	43	2	634	2	DCAF12L1	23	125685831	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	23776732	125685831	29584729	573	6221											
GPR112	139378	broad.mit.edu	37	chrX	135433623	135433623	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtttccttctacaatgttGaaatgagcttctctgtcttt	6	9	3	2			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135433623	C	C	135433623	3	2	6	1	0	0	0	0	1	0	0	0	6694	1291	45	4	6759	4	GPR112	23	135433623	Missense_Mutation	SNP	G	TCGA-05-4389-01A-01D-1265-08	9747792	135433623	19836937	574	6222											
MAGEC1	9947	broad.mit.edu	37	chrX	140993904	140993906	+	In_Frame_Del	DEL	CCC	-	-													cctctccagattcctgtgagCccctcctcctcctccacttt					rs176040	byFrequency	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140993906	-	-	140993904	7	5	6	1	0	1	0	1	0	0	0	0	9272	738	26	0	720	0	MAGEC1	23	140993904	In_Frame_Del	DEL	CCC	TCGA-05-4389-01A-01D-1265-08	5560281	140993904	14276656	575	6223											
MAGEA8	4107	broad.mit.edu	37	chrX	149013194	149013194	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactctgatcatgggaaccCttgaggaggtgactgattct	11	9	3	4			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149013194	A	A	149013194	3	1	6	1	0	0	0	0	1	0	0	0	9261	681	24	2	150	2	MAGEA8	23	149013194	Missense_Mutation	SNP	C	TCGA-05-4389-01A-01D-1265-08	8019290	149013194	6257366	576	6224											
CHD5	26038	broad.mit.edu	37	chr1	6185286	6185287	+	Missense_Mutation	DNP	CC	AA	AA													tccgctgtcgggcattgaagCccagcacctgggcgagtgga							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6185287	AA	AA	6185286	3	1	7	1	0	0	0	0	1	0	0	0	3359	739	26	3	1648	3	CHD5	1	6185286	Missense_Mutation	DNP	CC	TCGA-05-4390-01A-02D-1753-08		6185286	243065335	1	6225											
CHD5	26038	broad.mit.edu	37	chr1	6214773	6214773	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacaggctggggcacctgcGgggggctgacggctagcgga	20	11	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6214773	A	A	6214773	3	1	7	1	0	0	0	0	1	0	0	0	3359	1116	39	4	5320	4	CHD5	1	6214773	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	29487	6214773	243035848	2	6226											
PTCHD2	57540	broad.mit.edu	37	chr1	11574331	11574331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattttgatatccaaccaaGgtagagtcacaggtgaagtg	11	6	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11574331	T	T	11574331	1	4	7	0	1	0	0	0	0	0	0	0	12839	1015	35	2		2	PTCHD2	1	11574331	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	5359558	11574331	237676290	3	6227											
AADACL3	126767	broad.mit.edu	37	chr1	12785996	12785996	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgctggtactgcggtgtgGattccactggcatccagcct	12	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12785996	A	A	12785996	1	1	7	0	1	0	0	0	0	0	0	0	12	1189	41	4		4	AADACL3	1	12785996	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	1211665	12785996	236464625	4	6228											
LOC649330	649330	broad.mit.edu	37	chr1	12908066	12908066	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catccgatttcttgacaacaAgagtgttgagattcccaatg	8	9	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12908066	G	G	12908066	3	3	7	1	0	0	0	0	1	0	0	0	8969	72	3	5	808	5	LOC649330	1	12908066	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	122070	12908066	236342555	5	6229											
PRAMEF18	391003	broad.mit.edu	37	chr1	13695833	13695833	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagcagaaagtggtgaggtTggagcagcggctcagggcag	18	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13695833	A	A	13695833	3	1	7	1	0	0	0	0	1	0	0	0	12535	1812	63	5	1763	5	PRAMEF18	1	13695833	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	787767	13695833	235554788	6	6230											
ATP13A2	23400	broad.mit.edu	37	chr1	17330859	17330859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggcttgctgggtctcgatCcagatatagcgctggccctg	13	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17330859	A	A	17330859	3	1	7	1	0	0	0	0	1	0	0	0	1128	856	30	3	3349	3	ATP13A2	1	17330859	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3635026	17330859	231919762	7	6231											
PADI2	11240	broad.mit.edu	37	chr1	17398019	17398019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggacaggggatggtcaagCtttagatacccaggctgagt	14	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17398019	A	A	17398019	1	1	7	0	1	0	0	0	0	0	0	0	11472	812	28	3		3	PADI2	1	17398019	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	67160	17398019	231852602	8	6232											
CELA3A	10136	broad.mit.edu	37	chr1	22332066	22332066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaccctgtccctgcctgtGgccctgggcagcgggggaga	15	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22332066	A	A	22332066	1	1	7	0	1	0	0	0	0	0	0	0	3243	1363	47	4		4	CELA3A	1	22332066	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4934047	22332066	226918555	9	6233											
RPS6KA1	6195	broad.mit.edu	37	chr1	26887125	26887125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctggcccttccctggtGctgtctctactgagccaaga	9	15	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26887125	T	T	26887125	1	4	7	0	1	0	0	0	0	0	0	0	13761	1334	46	3		3	RPS6KA1	1	26887125	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4555059	26887125	222363496	10	6234											
RPS6KA1	6195	broad.mit.edu	37	chr1	26898594	26898594	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatctgagggggagacacAgtctcccaccgcagccccag	11	17	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26898594	T	T	26898594	1	4	7	0	1	0	0	0	0	0	0	0	13761	203	7	5		5	RPS6KA1	1	26898594	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	11469	26898594	222352027	11	6235											
PIGV	55650	broad.mit.edu	37	chr1	27117369	27117369	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtcagctgccgtatcctGactctgatgctgcaggtcag	12	12	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27117369	T	T	27117369	2	4	7	1	0	0	0	0	0	0	0	1	11996	1277	45	3		3	PIGV	1	27117369	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	218775	27117369	222133252	12	6236											
RCC1	1104	broad.mit.edu	37	chr1	28864429	28864429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagccctgtggagatgatGggcaaacagctggagaaccg	16	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28864429	T	T	28864429	3	4	7	1	0	0	0	0	1	0	0	0	13281	1348	47	2	1307	2	RCC1	1	28864429	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1747060	28864429	220386192	13	6237											
PUM1	9698	broad.mit.edu	37	chr1	31439146	31439146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgaagaagaaagcaaacCgtttggctatgaaagggact	11	6	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31439146	A	A	31439146	1	1	7	0	1	0	0	0	0	0	0	0	12933	667	23	1		1	PUM1	1	31439146	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2574717	31439146	217811475	14	6238											
CSMD2	114784	broad.mit.edu	37	chr1	34112407	34112407	+	Missense_Mutation	SNP	G	A	A													ccgtccgtcgtagatatggaGgaagtcatagccaggctcca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34112407	A	A	34112407	3	1	7	1	0	0	0	0	1	0	0	0	3979	1000	35	4	6132	4	CSMD2	1	34112407	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2673261	34112407	215138214	15	6239	23	2									
CSMD2	114784	broad.mit.edu	37	chr1	34112410	34112410	+	Missense_Mutation	SNP	A	C	C													tccgtcgtagatatggaggaAgtcatagccaggctccaggt							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34112410	C	C	34112410	3	2	7	1	0	0	0	0	1	0	0	0	3979	72	3	5	6135	5	CSMD2	1	34112410	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	3	34112410	215138211	16	6240	23	2									
C1orf212	113444	broad.mit.edu	37	chr1	35320621	35320621	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagaagacccccaaatacCacctggatgataagattcga	7	11	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35320621	A	A	35320621	1	1	7	0	1	0	0	0	0	0	0	0	2051	609	21	2		2	C1orf212	1	35320621	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	1208211	35320621	213930000	17	6241											
CTPS	1503	broad.mit.edu	37	chr1	41461722	41461722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaatgctgatgaaatGgaaagagatggctgacaggt	13	3	0	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41461722	T	T	41461722	3	4	7	1	0	0	0	0	1	0	0	0	4056	1357	47	2	880	2	CTPS	1	41461722	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	6141101	41461722	207788899	18	6242											
HIVEP3	59269	broad.mit.edu	37	chr1	42047134	42047134	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtagggcacagtgggcCccaatgggggcctgtcctgc	16	12	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42047134	G	G	42047134	3	3	7	1	0	0	0	0	1	0	0	0	7255	623	22	4	3909	4	HIVEP3	1	42047134	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	585412	42047134	207203487	19	6243											
ZMYND12	84217	broad.mit.edu	37	chr1	42898742	42898742	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctattggaattgggcaaaaCacaaattttgagttcaacta	8	6	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42898742	G	G	42898742	1	3	7	0	1	0	0	0	0	0	0	0	17833	493	17	4		4	ZMYND12	1	42898742	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	851608	42898742	206351879	20	6244											
RNF220	55182	broad.mit.edu	37	chr1	45098068	45098068	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgactgaatggtgagtcctgCccggcccctccctccgcccc	10	20	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45098068	T	T	45098068	1	4	7	0	1	0	0	0	0	0	0	0	13594	754	26	4		4	RNF220	1	45098068	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2199326	45098068	204152553	21	6245											
TAL1	6886	broad.mit.edu	37	chr1	47685389	47685389	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcctggtggcccagacCcatcaccgagggccggctcc	12	17	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47685389	A	A	47685389	1	1	7	0	1	0	0	0	0	0	0	0	15660	638	22	2		2	TAL1	1	47685389	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	2587321	47685389	201565232	22	6246											
GLIS1	148979	broad.mit.edu	37	chr1	53986457	53986457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggggagcaagcagagGgaaaggaggtgttagtgtga	19	4	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53986457	T	T	53986457	1	4	7	0	1	0	0	0	0	0	0	0	6509	1247	43	2		2	GLIS1	1	53986457	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	6301068	53986457	195264164	23	6247											
INADL	10207	broad.mit.edu	37	chr1	62593775	62593775	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaagcttaaagtaaacgaGagaactggttgaaagactaa	10	5	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62593775	T	T	62593775	1	4	7	0	1	0	0	0	0	0	0	0	7801	957	33	3		3	INADL	1	62593775	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	8607318	62593775	186656846	24	6248											
IL12RB2	3595	broad.mit.edu	37	chr1	67804386	67804386	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatttctcttttctggaaGgtgagttttaagcgtcaact	9	7	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67804386	A	A	67804386	2	1	7	1	0	0	0	0	0	0	0	1	7697	1014	35	4		4	IL12RB2	1	67804386	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	5210611	67804386	181446235	25	6249											
C1orf173	127254	broad.mit.edu	37	chr1	75037360	75037360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctgccgtttcaccacctCcgtgtagaacttccacagcc	6	16	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037360	A	A	75037360	3	1	7	1	0	0	0	0	1	0	0	0	2034	855	30	3	562	3	C1orf173	1	75037360	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	7232974	75037360	174213261	26	6250											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77094408	77094408	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccatatgggggtcataggTttatcactgaaaagaaagtg	11	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77094408	G	G	77094408	3	3	7	1	0	0	0	0	1	0	0	0	15343	1725	60	5	867	5	ST6GALNAC3	1	77094408	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	2057048	77094408	172156213	27	6251											
PTGFR	5737	broad.mit.edu	37	chr1	79002220	79002220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatattcttctacgaaagGctgtccttaagaatctctat	5	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79002220	T	T	79002220	3	4	7	1	0	0	0	0	1	0	0	0	12855	1203	42	3	1009	3	PTGFR	1	79002220	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1907812	79002220	170248401	28	6252											
WDR63	126820	broad.mit.edu	37	chr1	85547062	85547062	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctgcgcaacagagctgcAgtatctgatttccacccagt	9	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85547062	T	T	85547062	2	4	7	1	0	0	0	0	0	0	0	1	17441	175	7	5		5	WDR63	1	85547062	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	6544842	85547062	163703559	29	6253											
COL24A1	255631	broad.mit.edu	37	chr1	86210400	86210400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttgcagattcgtgctgGgttatctcgtgtgccaagag	12	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86210400	T	T	86210400	3	4	7	1	0	0	0	0	1	0	0	0	3715	1232	43	2	539	2	COL24A1	1	86210400	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	663338	86210400	163040221	30	6254											
HFM1	164045	broad.mit.edu	37	chr1	91818925	91818925	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactctgaaacagtttatTattttaaaacttagagatat	5	4	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91818925	C	C	91818925	1	2	7	0	1	0	0	0	0	0	0	0	7150	1769	61	5		5	HFM1	1	91818925	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	5608525	91818925	157431696	31	6255											
VCAM1	7412	broad.mit.edu	37	chr1	101185341	101185341	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcttcaggagctgaatacCctcccaggcacacacaggtg	11	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101185341	T	T	101185341	1	4	7	0	1	0	0	0	0	0	0	0	17264	638	22	4		4	VCAM1	1	101185341	5'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	9366416	101185341	148065280	32	6256											
COL11A1	1301	broad.mit.edu	37	chr1	103449751	103449751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactccaagttttccctaCagttaaaatatataataatc	4	8	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103449751	A	A	103449751	1	1	7	0	1	0	0	0	0	0	0	0	3699	493	17	3		3	COL11A1	1	103449751	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2264410	103449751	145800870	33	6257											
COL11A1	1301	broad.mit.edu	37	chr1	103479953	103479953	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccaagtaagtttaacacAgtattcggaagtaaatattc	6	6	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103479953	T	T	103479953	1	4	7	0	1	0	0	0	0	0	0	0	3699	203	7	5		5	COL11A1	1	103479953	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	30202	103479953	145770668	34	6258											
VAV3	10451	broad.mit.edu	37	chr1	108152626	108152626	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacagattaagtttacatAagggaagcttttagaaatca	7	4	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108152626	T	T	108152626	1	4	7	0	1	0	0	0	0	0	0	0	17260	377	13	5		5	VAV3	1	108152626	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	4672673	108152626	141097995	35	6259											
STXBP3	6814	broad.mit.edu	37	chr1	109315285	109315285	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtttttttgtcttaacttAggtgtatactcttgatgtac	8	5	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109315285	T	T	109315285	5	4	7	1	0	0	0	0	0	0	1	0	15472	434	15	5	463	5	STXBP3	1	109315285	Splice_Site	SNP	A	TCGA-05-4390-01A-02D-1753-08	1162659	109315285	139935336	36	6260											
GPR61	83873	broad.mit.edu	37	chr1	110087022	110087022	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccgctggacactcggagGgatatggggctggggccagt	20	9	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110087022	A	A	110087022	1	1	7	0	1	0	0	0	0	0	0	0	6767	1247	43	4		4	GPR61	1	110087022	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	771737	110087022	139163599	37	6261											
AMPD2	271	broad.mit.edu	37	chr1	110169256	110169256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtcagggcctgtgggaGgtggggatagtttgggttct	22	4	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110169256	T	T	110169256	1	4	7	0	1	0	0	0	0	0	0	0	586	1015	35	2		2	AMPD2	1	110169256	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	82234	110169256	139081365	38	6262											
AMPD1	270	broad.mit.edu	37	chr1	115222181	115222181	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgcccaggaattacccctGagcaactaaaatgtttacct	6	11	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115222181	C	C	115222181	1	2	7	0	1	0	0	0	0	0	0	0	585	1305	45	4		4	AMPD1	1	115222181	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	5052925	115222181	134028440	39	6263											
CASQ2	845	broad.mit.edu	37	chr1	116287460	116287460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacttacccagtttcttgGcaagcttggcttctttcttg	7	12	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116287460	T	T	116287460	3	4	7	1	0	0	0	0	1	0	0	0	2707	1203	42	3	931	3	CASQ2	1	116287460	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1065279	116287460	132963161	40	6264											
TTF2	8458	broad.mit.edu	37	chr1	117605061	117605061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgtggtagagcttcagGgtttgcttctgccacaggac	12	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117605061	T	T	117605061	3	4	7	1	0	0	0	0	1	0	0	0	16845	1232	43	2	194	2	TTF2	1	117605061	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1317601	117605061	131645560	41	6265											
SPAG17	200162	broad.mit.edu	37	chr1	118550797	118550797	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcatacacttcacctgcCtggtgacagtccgaggaccc	9	17	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118550797	T	T	118550797	3	4	7	1	0	0	0	0	1	0	0	0	15095	681	24	4	2286	4	SPAG17	1	118550797	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	945736	118550797	130699824	42	6266											
HSD3B2	3284	broad.mit.edu	37	chr1	119977629	119977629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgaaggggtcatcgatGgcgataatatccactttacc	9	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119977629	T	T	119977629	1	4	7	0	1	0	0	0	0	0	0	0	7458	1363	47	2		2	HSD3B2	1	119977629	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1426832	119977629	129272992	43	6267											
HSD3B2	3284	broad.mit.edu	37	chr1	119985605	119985605	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggtcgtcatccacaccgccTgtatcattgatgtcttcgga	9	13	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119985605	A	A	119985605	3	1	7	1	0	0	0	0	1	0	0	0	7458	1595	55	5		5	HSD3B2	1	119985605	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	7976	119985605	129265016	44	6268											
HSD3B2	3284	broad.mit.edu	37	chr1	119985679	119985679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaaggtagggtagcctgGggaggagataaagcaaggtg	19	3	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119985679	T	T	119985679	3	4	7	1	0	0	0	0	1	0	0	0	7458	1247	43	2		2	HSD3B2	1	119985679	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	74	119985679	129264942	45	6269											
HMGCS2	3158	broad.mit.edu	37	chr1	120293372	120293372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgtgttgttactcagaGgaagacattagggttttatg	11	5	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120293372	T	T	120293372	1	4	7	0	1	0	0	0	0	0	0	0	7300	1015	35	2		2	HMGCS2	1	120293372	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	307693	120293372	128957249	46	6270											
HMGCS2	3158	broad.mit.edu	37	chr1	120301895	120301895	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacacattctccatatgggtTcccctcagccctggaaaggc	8	14	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120301895	A	A	120301895	2	1	7	1	0	0	0	0	0	0	0	1	7300	1770	62	5		5	HMGCS2	1	120301895	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	8523	120301895	128948726	47	6271											
NBPF10	100132406	broad.mit.edu	37	chr1	145311315	145311315	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcattagagtaaatgtttAggtttccatttcttcctacc	5	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145311315	C	C	145311315	1	2	7	0	1	0	0	0	0	0	0	0	10287	435	15	5		5	NBPF10	1	145311315	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	25009420	145311315	103939306	48	6272											
NBPF10	100132406	broad.mit.edu	37	chr1	145747270	145747270	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgaatgagacatttgGggcttttcttccaggatctc	12	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145747270	A	A	145747270	1	1	7	0	1	0	0	0	0	0	0	0	10287	1247	43	4		4	NBPF10	1	145747270	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	435955	145747270	103503351	49	6273											
BCL9	607	broad.mit.edu	37	chr1	147092304	147092304	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagtatggcatgggcccCagaccattccttcccatgtc	10	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147092304	A	A	147092304	2	1	7	1	0	0	0	0	0	0	0	1	1386	581	21	2		2	BCL9	1	147092304	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1345034	147092304	102158317	50	6274											
ECM1	1893	broad.mit.edu	37	chr1	150483881	150483882	+	Intron	DNP	GG	TT	TT													agtgtcctttcctggagcctGggaggaaggcaggaatgtgg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	150483882	TT	TT	150483881	1	4	7	0	1	0	0	0	0	0	0	0	4937	1363	47	2		2	ECM1	1	150483881	Intron	DNP	GG	TCGA-05-4390-01A-02D-1753-08	3391577	150483881	98766740	51	6275											
S100A11	6282	broad.mit.edu	37	chr1	152005093	152005093	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagatgatgacagaaaggCtggaaggaaagggggtgggt	20	2	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152005093	T	T	152005093	1	4	7	0	1	0	0	0	0	0	0	0	13884	812	28	4		4	S100A11	1	152005093	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	1521212	152005093	97245528	52	6276											
CRNN	49860	broad.mit.edu	37	chr1	152384671	152384671	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgcatagcgcctgaaggcCtcgatgatcccattaatgtt	9	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152384671	G	G	152384671	3	3	7	1	0	0	0	0	1	0	0	0	3924	680	24	4	1456	4	CRNN	1	152384671	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	379578	152384671	96865950	53	6277											
SPRR2F	6705	broad.mit.edu	37	chr1	153085168	153085168	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcggggcacacaggaggTggctggcagggctgcttgca	20	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153085168	C	C	153085168	2	2	7	1	0	0	0	0	0	0	0	1	15219	1683	59	5		5	SPRR2F	1	153085168	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	700497	153085168	96165453	54	6278											
CRTC2	200186	broad.mit.edu	37	chr1	153923727	153923727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatgcagggaaggcagcCacgcatacctgagtgatgga	14	9	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153923727	A	A	153923727	1	1	7	0	1	0	0	0	0	0	0	0	3932	609	21	2		2	CRTC2	1	153923727	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	838559	153923727	95326894	55	6279											
CHRNB2	1141	broad.mit.edu	37	chr1	154542142	154542142	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagccccgccaaaatgtgTtaatgcttgtgtgcttcctc	8	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154542142	G	G	154542142	1	3	7	0	1	0	0	0	0	0	0	0	3422	1740	60	5		5	CHRNB2	1	154542142	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	618415	154542142	94708479	56	6280											
FAM189B	10712	broad.mit.edu	37	chr1	155220391	155220391	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataggagcgggcagcccgtgGggggcgccgtggcagggggc	23	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155220391	A	A	155220391	3	1	7	1	0	0	0	0	1	0	0	0	5564	1232	43	4	836	4	FAM189B	1	155220391	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	678249	155220391	94030230	57	6281											
GON4L	54856	broad.mit.edu	37	chr1	155737191	155737191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaccttctgcctcctaCagacttcgaggaagagggct	11	12	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155737191	A	A	155737191	1	1	7	0	1	0	0	0	0	0	0	0	6636	493	17	3		3	GON4L	1	155737191	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	516800	155737191	93513430	58	6282											
C1orf85	112770	broad.mit.edu	37	chr1	156264478	156264478	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacccacccccagtctttAgttccaccctctaattggga	5	16	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156264478	C	C	156264478	1	2	7	0	1	0	0	0	0	0	0	0	2084	435	15	5		5	C1orf85	1	156264478	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	527287	156264478	92986143	59	6283											
RHBG	57127	broad.mit.edu	37	chr1	156346992	156346992	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctcggctcaaggcagcccTggctggtgagagccaggggc	18	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156346992	A	A	156346992	1	1	7	0	1	0	0	0	0	0	0	0	13433	1595	55	5		5	RHBG	1	156346992	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	82514	156346992	92903629	60	6284											
BCAN	63827	broad.mit.edu	37	chr1	156622549	156622549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacacgggcccctgagGgtaccagggagctggaggcc	16	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156622549	T	T	156622549	3	4	7	1	0	0	0	0	1	0	0	0	1350	1232	43	2	1833	2	BCAN	1	156622549	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	275557	156622549	92628072	61	6285											
FCRL1	115350	broad.mit.edu	37	chr1	157772484	157772484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaagatgacataggaagaCcctgtgcagggagagtttca	12	8	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157772484	T	T	157772484	1	4	7	0	1	0	0	0	0	0	0	0	5851	522	18	4		4	FCRL1	1	157772484	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1149935	157772484	91478137	62	6286											
CD1B	910	broad.mit.edu	37	chr1	158299405	158299405	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagacggccaggtccaggaCtggggccactggacagccag	16	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158299405	T	T	158299405	3	4	7	1	0	0	0	0	1	0	0	0	3005	565	20	4	372	4	CD1B	1	158299405	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	526921	158299405	90951216	63	6287											
SPTA1	6708	broad.mit.edu	37	chr1	158607998	158607998	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcccgctggagagcaaatCttcagccaatgtattcaggt	10	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158607998	G	G	158607998	3	3	7	1	0	0	0	0	1	0	0	0	15234	913	32	4	2313	4	SPTA1	1	158607998	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	308593	158607998	90642623	64	6288											
SPTA1	6708	broad.mit.edu	37	chr1	158622905	158622905	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttcctcaaaaagaaacCgaaacatttaaaagattcta	4	9	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158622905	A	A	158622905	1	1	7	0	1	0	0	0	0	0	0	0	15234	667	23	1		1	SPTA1	1	158622905	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	14907	158622905	90627716	65	6289											
SPTA1	6708	broad.mit.edu	37	chr1	158644338	158644339	+	Nonsense_Mutation	DNP	GC	AA	AA													tttcttctctaccttatgctGctgatgcctgtccagcagaa							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	158644339	AA	AA	158644338	4	1	7	1	0	0	0	0	0	1	0	0	15234	1328	46	4	6195	4	SPTA1	1	158644338	Nonsense_Mutation	DNP	GC	TCGA-05-4390-01A-02D-1753-08	21433	158644338	90606283	66	6290											
OR6N1	128372	broad.mit.edu	37	chr1	158736290	158736290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagagaatgctgacaaaGtggtacatgggtgtgtgaag	16	3	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158736290	T	T	158736290	3	4	7	1	0	0	0	0	1	0	0	0	11300	1020	36	3	758	3	OR6N1	1	158736290	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	91952	158736290	90514331	67	6291											
APCS	325	broad.mit.edu	37	chr1	159558097	159558097	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagagttggagagtatAgtctatacattggaagacac	11	4	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159558097	T	T	159558097	3	4	7	1	0	0	0	0	1	0	0	0	769	420	15	5	277	5	APCS	1	159558097	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	821807	159558097	89692524	68	6292											
CCDC19	25790	broad.mit.edu	37	chr1	159860505	159860505	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagagcagcgtgatgccctgTatctgagcatggctggatgt	14	8	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159860505	C	C	159860505	1	2	7	0	1	0	0	0	0	0	0	0	2822	1653	57	5		5	CCDC19	1	159860505	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	302408	159860505	89390116	69	6293											
VANGL2	57216	broad.mit.edu	37	chr1	160390211	160390211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccacagcatccagcgcGtggcagtgtggatcctggag	13	14	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160390211	T	T	160390211	3	4	7	1	0	0	0	0	1	0	0	0	17247	1145	40	3	825	3	VANGL2	1	160390211	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	529706	160390211	88860410	70	6294											
CD48	962	broad.mit.edu	37	chr1	160654604	160654604	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccgagagtgccccatgccTcccaggaagccctacagtgg	11	17	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160654604	A	A	160654604	1	1	7	0	1	0	0	0	0	0	0	0	3050	1566	54	5		5	CD48	1	160654604	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	264393	160654604	88596017	71	6295											
SLAMF7	57823	broad.mit.edu	37	chr1	160709145	160709145	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatcctttggcagctcacAggtgagtccggccggattct	11	11	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160709145	T	T	160709145	2	4	7	1	0	0	0	0	0	0	0	1	14482	202	7	5		5	SLAMF7	1	160709145	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	54541	160709145	88541476	72	6296											
SLAMF7	57823	broad.mit.edu	37	chr1	160722829	160722829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagtttcctggatgtcagGgtctccatggacgatccaga	11	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160722829	T	T	160722829	1	4	7	0	1	0	0	0	0	0	0	0	14482	1247	43	2		2	SLAMF7	1	160722829	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	13684	160722829	88527792	73	6297											
F11R	50848	broad.mit.edu	37	chr1	160970596	160970596	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaggaggcaagagcaaggaCagagtgaactggagagctaa	16	5	0	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160970596	G	G	160970596	1	3	7	0	1	0	0	0	0	0	0	0	5381	493	17	4		4	F11R	1	160970596	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	247767	160970596	88280025	74	6298											
SDHC	6391	broad.mit.edu	37	chr1	161310484	161310484	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacacacatatgtgcttctTtgaaaaacttggctgtttca	6	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161310484	C	C	161310484	1	2	7	0	1	0	0	0	0	0	0	0	14079	1856	64	5		5	SDHC	1	161310484	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	339888	161310484	87940137	75	6299											
SDHC	6391	broad.mit.edu	37	chr1	161332332	161332332	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctccttatttgtttagaTccttttgtattttcagatct	5	7	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161332332	A	A	161332332	1	1	7	0	1	0	0	0	0	0	0	0	14079	1450	50	5		5	SDHC	1	161332332	3'UTR	SNP	T	TCGA-05-4390-01A-02D-1753-08	21848	161332332	87918289	76	6300											
FCGR2A	2212	broad.mit.edu	37	chr1	161479908	161479908	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaggggagaagaggggaTggacaagggctgaggtcaca	21	4	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161479908	C	C	161479908	1	2	7	0	1	0	0	0	0	0	0	0	5838	1479	51	5		5	FCGR2A	1	161479908	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	147576	161479908	87770713	77	6301											
OLFML2B	25903	broad.mit.edu	37	chr1	161953809	161953809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggctgaagccctcatcgtCcagggccgggtagatgagcc	14	13	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161953809	A	A	161953809	3	1	7	1	0	0	0	0	1	0	0	0	10953	855	30	3	347	3	OLFML2B	1	161953809	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	473901	161953809	87296812	78	6302											
LMX1A	4009	broad.mit.edu	37	chr1	165179843	165179843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactctatccaatgagctaaGgcgagaaaacctggcagcaa	9	10	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165179843	T	T	165179843	1	4	7	0	1	0	0	0	0	0	0	0	8935	1015	35	2		2	LMX1A	1	165179843	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3226034	165179843	84070778	79	6303											
ALDH9A1	223	broad.mit.edu	37	chr1	165636479	165636479	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgagagaataggatcaatTaaatatctaagcagatactg	9	4	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165636479	C	C	165636479	1	2	7	0	1	0	0	0	0	0	0	0	506	1769	61	5		5	ALDH9A1	1	165636479	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	456636	165636479	83614142	80	6304											
UCK2	7371	broad.mit.edu	37	chr1	165876981	165876982	+	Missense_Mutation	DNP	GG	TT	TT													gaatggagggccctccaaacGgcagaccaatggctgtctca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	165876982	TT	TT	165876981	3	4	7	1	0	0	0	0	1	0	0	0	17050	1116	39	1	733	1	UCK2	1	165876981	Missense_Mutation	DNP	GG	TCGA-05-4390-01A-02D-1753-08	240502	165876981	83373640	81	6305											
TNR	7143	broad.mit.edu	37	chr1	175375584	175375584	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcttctgcactcacctcCtgctcagcagaggcctctag	8	16	5	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175375584	T	T	175375584	2	4	7	1	0	0	0	0	0	0	0	1	16461	680	24	4		4	TNR	1	175375584	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	9498603	175375584	73875037	82	6306											
PAPPA2	60676	broad.mit.edu	37	chr1	176525976	176525976	+	Frame_Shift_Del	DEL	C	-	-													agccatggctgccactactaCcaccgccattttcacaaccc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176525976	-	-	176525976	7	5	7	1	0	1	0	1	0	0	0	0	11527	507	18	0	520	0	PAPPA2	1	176525976	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	1150392	176525976	72724645	83	6307											
ASTN1	460	broad.mit.edu	37	chr1	176903321	176903321	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatactccagccagagtcGccgctggacctgcttgtttg	10	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176903321	A	A	176903321	4	1	7	1	0	0	0	0	0	1	0	0	1068	1095	38	4	1282	4	ASTN1	1	176903321	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	377345	176903321	72347300	84	6308											
FAM5B	57795	broad.mit.edu	37	chr1	177198961	177198962	+	5'UTR	DNP	GG	TT	TT													gagccctggaggagcagcacGgagcgggagagcgtggcgag							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	177198962	TT	TT	177198961	1	4	7	0	1	0	0	0	0	0	0	0	5644	1131	39	1		1	FAM5B	1	177198961	5'UTR	DNP	GG	TCGA-05-4390-01A-02D-1753-08	295640	177198961	72051660	85	6309											
RALGPS2	55103	broad.mit.edu	37	chr1	178858873	178858873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactacttggagtttattttGtctgggttaaataatataat	7	3	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178858873	T	T	178858873	1	4	7	0	1	0	0	0	0	0	0	0	13126	1392	48	3		3	RALGPS2	1	178858873	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1659912	178858873	70391748	86	6310											
ABL2	27	broad.mit.edu	37	chr1	179102287	179102287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacgtgagccaccacaccCagccaggccaacttattttt	6	15	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179102287	A	A	179102287	1	1	7	0	1	0	0	0	0	0	0	0	93	609	21	2		2	ABL2	1	179102287	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	243414	179102287	70148334	87	6311											
CACNA1E	777	broad.mit.edu	37	chr1	181727186	181727186	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcactttgtggtgtctcCgtcctttgagtacaccatta	10	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181727186	T	T	181727186	3	4	7	1	0	0	0	0	1	0	0	0	2568	652	23	4	4555	4	CACNA1E	1	181727186	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2624899	181727186	67523435	88	6312											
HMCN1	83872	broad.mit.edu	37	chr1	185986324	185986324	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaaattgtattctttatattCctcttttaaaagacatgctc	4	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185986324	G	G	185986324	1	3	7	0	1	0	0	0	0	0	0	0	7287	870	30	4		4	HMCN1	1	185986324	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4259138	185986324	63264297	89	6313											
PTGS2	5743	broad.mit.edu	37	chr1	186643683	186643683	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgatttgaaaacccacTtctccaccaaaagtgcttgg	7	10	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186643683	G	G	186643683	3	3	7	1	0	0	0	0	1	0	0	0	12862	1606	56	5	201	5	PTGS2	1	186643683	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	657359	186643683	62606938	90	6314											
FAM5C	339479	broad.mit.edu	37	chr1	190067374	190067374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatcctgggatccctgaGtataggggtagtccagctgc	13	10	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067374	T	T	190067374	3	4	7	1	0	0	0	0	1	0	0	0	5645	1029	36	3	229	3	FAM5C	1	190067374	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3423691	190067374	59183247	91	6315											
KCNT2	343450	broad.mit.edu	37	chr1	196288762	196288762	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctagggaaaggaagtaagttGacttagtttgcatttccaaa	10	5	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196288762	C	C	196288762	1	2	7	0	1	0	0	0	0	0	0	0	8162	1305	45	4		4	KCNT2	1	196288762	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	6221388	196288762	52961859	92	6316											
KCNT2	343450	broad.mit.edu	37	chr1	196296075	196296075	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggatacttcattaaaatttgGagaaaatttaagctatagga	8	3	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196296075	C	C	196296075	1	2	7	0	1	0	0	0	0	0	0	0	8162	1189	41	4		4	KCNT2	1	196296075	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	7313	196296075	52954546	93	6317											
KCNT2	343450	broad.mit.edu	37	chr1	196392181	196392181	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagattttagaaacttacaGatgatgtcctatccacttca	5	8	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196392181	T	T	196392181	3	4	7	1	0	0	0	0	1	0	0	0	8162	956	33	3	2291	3	KCNT2	1	196392181	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	96106	196392181	52858440	94	6318											
ZBTB41	360023	broad.mit.edu	37	chr1	197169211	197169211	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgaaaaactgaatgtgtTacgtgatccagggtgacaac	11	7	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197169211	A	A	197169211	2	1	7	1	0	0	0	0	0	0	0	1	17669	1741	61	5		5	ZBTB41	1	197169211	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	777030	197169211	52081410	95	6319											
ATP6V1G3	127124	broad.mit.edu	37	chr1	198509685	198509685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcgtgacagacccctcaCaggtgagacttactcttctt	7	12	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198509685	A	A	198509685	1	1	7	0	1	0	0	0	0	0	0	0	1192	493	17	3		3	ATP6V1G3	1	198509685	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1340474	198509685	50740936	96	6320											
KIF14	9928	broad.mit.edu	37	chr1	200587437	200587437	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtgtcattttgacagaatCtatttcagctgttttccact	6	9	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200587437	A	A	200587437	3	1	7	1	0	0	0	0	1	0	0	0	8346	913	32	3	4647	3	KIF14	1	200587437	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2077752	200587437	48663184	97	6321											
KIF21B	23046	broad.mit.edu	37	chr1	200945835	200945835	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttttcatgggtactcccaGggcaacagagggcaaagatt	11	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200945835	A	A	200945835	1	1	7	0	1	0	0	0	0	0	0	0	8359	1015	35	4		4	KIF21B	1	200945835	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	358398	200945835	48304786	98	6322											
CACNA1S	779	broad.mit.edu	37	chr1	201042863	201042863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggatcccacaccaagGgctccaggggatctgtagga	14	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201042863	T	T	201042863	1	4	7	0	1	0	0	0	0	0	0	0	2573	1247	43	2		2	CACNA1S	1	201042863	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	97028	201042863	48207758	99	6323											
CACNA1S	779	broad.mit.edu	37	chr1	201061212	201061212	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtggctttggatgacGttaacctgttccagaatcac	11	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201061212	C	C	201061212	3	2	7	1	0	0	0	0	1	0	0	0	2573	1136	40	4	5356	4	CACNA1S	1	201061212	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	18349	201061212	48189409	100	6324											
CR1L	1379	broad.mit.edu	37	chr1	207871334	207871334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacagacacacacacacaCacacacaatcagagagatga	6	13	1	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207871334	A	A	207871334	1	1	7	0	1	0	0	0	0	0	0	0	3873	493	17	3		3	CR1L	1	207871334	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	6810122	207871334	41379287	101	6325											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209935992	209935992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactcccatcaagaagccaCccaaacaccaccgtggtaag	6	16	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209935992	A	A	209935992	3	1	7	1	0	0	0	0	1	0	0	0	16566	507	18	3	484	3	TRAF3IP3	1	209935992	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2064658	209935992	39314629	102	6326											
KCNH1	3756	broad.mit.edu	37	chr1	211035281	211035281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataatcacgtttggtgatGtgatgaatgcatgtagtaag	13	3	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211035281	T	T	211035281	1	4	7	0	1	0	0	0	0	0	0	0	8101	1392	48	3		3	KCNH1	1	211035281	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1099289	211035281	38215340	103	6327											
KCNH1	3756	broad.mit.edu	37	chr1	211192199	211192199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggatcacccataaaggCactaacctcatccacgttct	5	16	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211192199	A	A	211192199	3	1	7	1	0	0	0	0	1	0	0	0	8101	710	25	3	2035	3	KCNH1	1	211192199	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	156918	211192199	38058422	104	6328											
USH2A	7399	broad.mit.edu	37	chr1	216262470	216262470	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattagttgtagttacttcCactggtgaccccttaaggga	9	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216262470	T	T	216262470	2	4	7	1	0	0	0	0	0	0	0	1	17162	581	21	4		4	USH2A	1	216262470	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	5070271	216262470	32988151	105	6329											
USH2A	7399	broad.mit.edu	37	chr1	216465702	216465702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcattataaagaggcaagCagcgatcacactagaacaaa	8	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216465702	A	A	216465702	3	1	7	1	0	0	0	0	1	0	0	0	17162	710	25	3	14219	3	USH2A	1	216465702	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	203232	216465702	32784919	106	6330											
USH2A	7399	broad.mit.edu	37	chr1	216538348	216538348	+	Frame_Shift_Del	DEL	C	-	-													atgcaaaatctgtaattgaaCcacttagagttcttgcattg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216538348	-	-	216538348	7	5	7	1	0	1	0	1	0	0	0	0	17162	507	18	0	15167	0	USH2A	1	216538348	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	72646	216538348	32712273	107	6331											
MOSC1	64757	broad.mit.edu	37	chr1	220978313	220978313	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggtgacatcgttaggtgcGagggctcctgggaaatctct	15	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220978313	T	T	220978313	1	4	7	0	1	0	0	0	0	0	0	0	9807	1073	37	3		3	MOSC1	1	220978313	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4439965	220978313	28272308	108	6332											
C1orf69	200205	broad.mit.edu	37	chr1	228362629	228362629	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgacccgcgaacagcacGcatggggtggcggctcctca	14	16	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228362629	C	C	228362629	3	2	7	1	0	0	0	0	1	0	0	0	2079	1087	38	4	584	4	C1orf69	1	228362629	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	7384316	228362629	20887992	109	6333											
HIST3H2A	92815	broad.mit.edu	37	chr1	228645527	228645527	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgaccggacatttccgagtCaaggaaaaaagacaacggca	10	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228645527	A	A	228645527	1	1	7	0	1	0	0	0	0	0	0	0	7249	841	29	3		3	HIST3H2A	1	228645527	5'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	282898	228645527	20605094	110	6334											
GNPAT	8443	broad.mit.edu	37	chr1	231401300	231401300	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgcttataacctcagcaAttggtttaatctgtgtgact	7	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231401300	G	G	231401300	1	3	7	0	1	0	0	0	0	0	0	0	6605	116	4	5		5	GNPAT	1	231401300	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2755773	231401300	17849321	111	6335											
ZP4	57829	broad.mit.edu	37	chr1	238053432	238053432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttttcttatccaggtgcCacagtcggagtcattctgca	8	12	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238053432	A	A	238053432	3	1	7	1	0	0	0	0	1	0	0	0	18347	594	21	2	1446	2	ZP4	1	238053432	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	6652132	238053432	11197189	112	6336											
HNRNPU	3192	broad.mit.edu	37	chr1	245018956	245018956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgtatattgtaccctaCttatacagaagacttaggat	6	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245018956	A	A	245018956	1	1	7	0	1	0	0	0	0	0	0	0	7340	580	20	3		3	HNRNPU	1	245018956	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	6965524	245018956	4231665	113	6337											
OR2B11	127623	broad.mit.edu	37	chr1	247614730	247614730	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcttgatcacggccggCacctcacagaaaaagttgtt	10	11	2	2	rs140643495		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614730	A	A	247614730	2	1	7	1	0	0	0	0	0	0	0	1	11082	697	25	3		3	OR2B11	1	247614730	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2595774	247614730	1635891	114	6338											
OR2W3	343171	broad.mit.edu	37	chr1	248059435	248059435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcctgcgtgagatgcccGccctgatccggatggcctgc	12	15	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059435	T	T	248059435	3	4	7	1	0	0	0	0	1	0	0	0	11127	1087	38	3	549	3	OR2W3	1	248059435	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	444705	248059435	1191186	115	6339											
OR2AK2	391191	broad.mit.edu	37	chr1	248128993	248128993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaaacgtatgtgttcttGgcccttggtggaactgaagc	11	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248128993	T	T	248128993	3	4	7	1	0	0	0	0	1	0	0	0	11080	1339	47	2	362	2	OR2AK2	1	248128993	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	69558	248128993	1121628	116	6340											
OR2AK2	391191	broad.mit.edu	37	chr1	248129570	248129570	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctgagaaataaggaagtgAcgggggcagtgaggagactg	18	5	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248129570	T	T	248129570	3	4	7	1	0	0	0	0	1	0	0	0	11080	275	10	5	939	5	OR2AK2	1	248129570	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	577	248129570	1121051	117	6341											
OR2L2	26246	broad.mit.edu	37	chr1	248202292	248202292	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggcctattcaacctgtagCacccacctcactgtagtgtc	7	14	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248202292	G	G	248202292	3	3	7	1	0	0	0	0	1	0	0	0	11101	709	25	4	725	4	OR2L2	1	248202292	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	72722	248202292	1048329	118	6342											
OR2L13	284521	broad.mit.edu	37	chr1	248247843	248247843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggacttggtgggctctgGtgtggttaaagagtcccagg	17	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247843	T	T	248247843	1	4	7	0	1	0	0	0	0	0	0	0	11100	1276	44	3		3	OR2L13	1	248247843	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	45551	248247843	1002778	119	6343											
RRM2	6241	broad.mit.edu	37	chr2	10269234	10269234	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactctaatgaagcaatacAttgagtttgtggcagacaga	10	7	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10269234	G	G	10269234	3	3	7	1	0	0	0	0	1	0	0	0	13793	217	8	5	1184	5	RRM2	2	10269234	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08		10269234	232930139	120	6344											
WDR35	57539	broad.mit.edu	37	chr2	20180465	20180465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtatacctttatataacatCcacacaatgataagcccgtt	4	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20180465	A	A	20180465	3	1	7	1	0	0	0	0	1	0	0	0	17416	856	30	3	3351	3	WDR35	2	20180465	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	9911231	20180465	223018908	121	6345											
APOB	338	broad.mit.edu	37	chr2	21233989	21233989	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtatgttctccccagagagcGagtttcccattgccatttgt	9	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21233989	C	C	21233989	2	2	7	1	0	0	0	0	0	0	0	1	787	1045	37	4		4	APOB	2	21233989	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	1053524	21233989	221965384	122	6346											
C2orf39	92749	broad.mit.edu	37	chr2	26637394	26637394	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaagaaatcatgtggtccAtgttgctgtctctaggcaga	12	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26637394	G	G	26637394	1	3	7	0	1	0	0	0	0	0	0	0	2186	232	8	5		5	C2orf39	2	26637394	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	5403405	26637394	216561979	123	6347											
OTOF	9381	broad.mit.edu	37	chr2	26702462	26702462	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcttcctcatcccccggctCcttccggggccgaggccgct	10	19	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26702462	G	G	26702462	3	3	7	1	0	0	0	0	1	0	0	0	11397	864	30	4	4470	4	OTOF	2	26702462	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	65068	26702462	216496911	124	6348											
CAD	790	broad.mit.edu	37	chr2	27456644	27456644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtctccaaagagcatcccGtggtcatctccaagttcatc	7	15	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27456644	T	T	27456644	3	4	7	1	0	0	0	0	1	0	0	0	2591	1145	40	3	3449	3	CAD	2	27456644	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	754182	27456644	215742729	125	6349											
PLB1	151056	broad.mit.edu	37	chr2	28718959	28718959	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagctcttccagaggccCgagtcacctggagcattctg	12	13	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28718959	A	A	28718959	1	1	7	0	1	0	0	0	0	0	0	0	12119	667	23	1		1	PLB1	2	28718959	5'Flank	SNP	C	TCGA-05-4390-01A-02D-1753-08	1262315	28718959	214480414	126	6350											
BIRC6	57448	broad.mit.edu	37	chr2	32724814	32724814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatagctccgtgggtgctcGagcatgctttgggggactct	15	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32724814	T	T	32724814	3	4	7	1	0	0	0	0	1	0	0	0	1444	1058	37	3	8851	3	BIRC6	2	32724814	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4005855	32724814	210474559	127	6351											
LTBP1	4052	broad.mit.edu	37	chr2	33585790	33585790	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaagaatgctgctgtacatCaggcgtgggatggggagata	15	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33585790	A	A	33585790	4	1	7	1	0	0	0	0	0	1	0	0	9160	838	29	3	4288	3	LTBP1	2	33585790	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	860976	33585790	209613583	128	6352											
RASGRP3	25780	broad.mit.edu	37	chr2	33745418	33745418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagagaggctatgagtgGgagcggttttagattgaagg	17	2	0	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33745418	T	T	33745418	1	4	7	0	1	0	0	0	0	0	0	0	13184	1247	43	2		2	RASGRP3	2	33745418	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	159628	33745418	209453955	129	6353											
DHX57	90957	broad.mit.edu	37	chr2	39083645	39083645	+	Intron	DEL	C	-	-													tatcagttgggttactttttCtttttttttttttttttttg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39083645	-	-	39083645	6	5	7	0	1	1	0	1	0	0	0	0	4553	928	32	0		0	DHX57	2	39083645	Intron	DEL	C	TCGA-05-4390-01A-02D-1753-08	5338227	39083645	204115728	130	6354											
TMEM178	130733	broad.mit.edu	37	chr2	39931220	39931220	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtttcttatttccttcaaGgtattgcgcagcgatgcacg	10	10	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39931220	T	T	39931220	5	4	7	1	0	0	0	0	0	0	1	0	16218	1014	35	2	406	2	TMEM178	2	39931220	Splice_Site	SNP	G	TCGA-05-4390-01A-02D-1753-08	847575	39931220	203268153	131	6355											
PLEKHH2	130271	broad.mit.edu	37	chr2	43970957	43970957	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttattaagagaactgcttTgttatttctgtctaggtagt	8	5	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43970957	C	C	43970957	1	2	7	0	1	0	0	0	0	0	0	0	12172	1827	63	5		5	PLEKHH2	2	43970957	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	4039737	43970957	199228416	132	6356											
SLC3A1	6519	broad.mit.edu	37	chr2	44508764	44508764	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttagtaaaacccttttgaggGaaaaatgaatgaatatagtt	8	3	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44508764	T	T	44508764	1	4	7	0	1	0	0	0	0	0	0	0	14740	1189	41	3		3	SLC3A1	2	44508764	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	537807	44508764	198690609	133	6357											
SIX2	10736	broad.mit.edu	37	chr2	45236176	45236176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccagccgctcgatgttgCcgccctgctgcagcacctcg	12	18	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45236176	A	A	45236176	3	1	7	1	0	0	0	0	1	0	0	0	14460	739	26	3	809	3	SIX2	2	45236176	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	727412	45236176	197963197	134	6358											
LHCGR	3973	broad.mit.edu	37	chr2	48950749	48950749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttatgcatagcaatcagCctggtacttacagaatgaaa	8	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48950749	A	A	48950749	1	1	7	0	1	0	0	0	0	0	0	0	8834	754	26	3		3	LHCGR	2	48950749	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3714573	48950749	194248624	135	6359											
PSME4	23198	broad.mit.edu	37	chr2	54127178	54127178	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaaaaagaaaaaagcaggAaaaaaaatgaagttctgatg	9	2	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54127178	G	G	54127178	1	3	7	0	1	0	0	0	0	0	0	0	12815	261	9	5		5	PSME4	2	54127178	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	5176429	54127178	189072195	136	6360											
KIAA1841	84542	broad.mit.edu	37	chr2	61331223	61331223	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccaaatcagcaacgtcagTcctcaagtagttttcattat	5	12	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61331223	A	A	61331223	1	1	7	0	1	0	0	0	0	0	0	0	8331	1682	58	5		5	KIAA1841	2	61331223	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	7204045	61331223	181868150	137	6361											
PLEK	5341	broad.mit.edu	37	chr2	68615506	68615506	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgatgttagcttgctgtttGattttccaacagccagacag	10	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68615506	T	T	68615506	1	4	7	0	1	0	0	0	0	0	0	0	12148	1305	45	3		3	PLEK	2	68615506	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	7284283	68615506	174583867	138	6362											
ANTXR1	84168	broad.mit.edu	37	chr2	69379400	69379400	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctctgctgcactgtggtaAgtgccccaaacctcaggcca	9	16	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69379400	T	T	69379400	1	4	7	0	1	0	0	0	0	0	0	0	711	87	3	5		5	ANTXR1	2	69379400	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	763894	69379400	173819973	139	6363											
FIGLA	344018	broad.mit.edu	37	chr2	71012401	71012401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaaataatctcccaaaCtagtaaaccccactgcccca	2	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71012401	A	A	71012401	1	1	7	0	1	0	0	0	0	0	0	0	5947	580	20	3		3	FIGLA	2	71012401	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1633001	71012401	172186972	140	6364											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71376643	71376643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggggaagtggatagcaaGtgctgggtgactggaatgtc	19	4	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71376643	T	T	71376643	1	4	7	0	1	0	0	0	0	0	0	0	9819	1044	36	3		3	MPHOSPH10	2	71376643	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	364242	71376643	171822730	141	6365											
ZNF638	27332	broad.mit.edu	37	chr2	71591170	71591170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctagaagatcaagctcaaGtcacagattccgtcggtctc	8	11	5	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71591170	T	T	71591170	3	4	7	1	0	0	0	0	1	0	0	0	18182	1029	36	3	1519	3	ZNF638	2	71591170	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	214527	71591170	171608203	142	6366											
DYSF	8291	broad.mit.edu	37	chr2	71892480	71892480	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggtgggctctcgctgtatCcctccctctctcatcagacc	8	16	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71892480	A	A	71892480	1	1	7	0	1	0	0	0	0	0	0	0	4899	870	30	3		3	DYSF	2	71892480	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	301310	71892480	171306893	143	6367											
ALMS1	7840	broad.mit.edu	37	chr2	73675761	73675761	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagctgtgtctggaccagctGaccagaagactgggacagca	13	11	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73675761	T	T	73675761	3	4	7	1	0	0	0	0	1	0	0	0	535	1290	45	3	2134	3	ALMS1	2	73675761	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1783281	73675761	169523612	144	6368											
C2orf78	388960	broad.mit.edu	37	chr2	74041468	74041468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagtcctgagacttcaaCcactattctttggcagtgct	7	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74041468	A	A	74041468	1	1	7	0	1	0	0	0	0	0	0	0	2217	522	18	3		3	C2orf78	2	74041468	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	365707	74041468	169157905	145	6369											
REG3G	130120	broad.mit.edu	37	chr2	79253910	79253910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccaaggcctatggctccCcctgctatgccttgtttttg	9	14	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79253910	A	A	79253910	3	1	7	1	0	0	0	0	1	0	0	0	13321	623	22	2	154	2	REG3G	2	79253910	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	5212442	79253910	163945463	146	6370											
CTNNA2	1496	broad.mit.edu	37	chr2	79878763	79878763	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctaacagtggaaaggctGttggagccacttgttacaca	11	9	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79878763	T	T	79878763	2	4	7	1	0	0	0	0	0	0	0	1	4047	1364	48	3		3	CTNNA2	2	79878763	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	624853	79878763	163320610	147	6371											
CTNNA2	1496	broad.mit.edu	37	chr2	80816498	80816498	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtggagatattccatcaaGagaaaagcaagctggatgca	12	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80816498	C	C	80816498	3	2	7	1	0	0	0	0	1	0	0	0	4047	943	33	4	1923	4	CTNNA2	2	80816498	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	937735	80816498	162382875	148	6372											
DNAH6	1768	broad.mit.edu	37	chr2	84804345	84804345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttttaaaatccaatatgGtatattttatgctttatgtg	5	4	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84804345	T	T	84804345	1	4	7	0	1	0	0	0	0	0	0	0	4645	1276	44	3		3	DNAH6	2	84804345	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3987847	84804345	158395028	149	6373											
SNRNP200	23020	broad.mit.edu	37	chr2	96945230	96945230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgacacagcgcccctcatCgtcctgcaaagggcggttgg	13	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96945230	A	A	96945230	3	1	7	1	0	0	0	0	1	0	0	0	14966	884	31	3	1358	3	SNRNP200	2	96945230	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	12140885	96945230	146254143	150	6374											
RGPD3	653489	broad.mit.edu	37	chr2	107049613	107049613	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtaggagatggtgtagaAtgttttatttctgaatccgc	12	4	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107049613	C	C	107049613	3	2	7	1	0	0	0	0	1	0	0	0	13395	98	4	5	2974	5	RGPD3	2	107049613	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	10104383	107049613	136149760	151	6375											
ST6GAL2	84620	broad.mit.edu	37	chr2	107459835	107459835	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccggtacaggaaggccctgGacatggaggagtacagcctg	16	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107459835	A	A	107459835	3	1	7	1	0	0	0	0	1	0	0	0	15340	1174	41	4	1097	4	ST6GAL2	2	107459835	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	410222	107459835	135739538	152	6376											
LIMS1	3987	broad.mit.edu	37	chr2	109297056	109297056	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaagtgccacagacacAgtcgtagttctgttttggag	10	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109297056	T	T	109297056	1	4	7	0	1	0	0	0	0	0	0	0	8875	203	7	5		5	LIMS1	2	109297056	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1837221	109297056	133902317	153	6377											
EDAR	10913	broad.mit.edu	37	chr2	109545663	109545663	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgcttacccagggaggCaagggccacactcagcgtca	12	14	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109545663	T	T	109545663	3	4	7	1	0	0	0	0	1	0	0	0	4945	710	25	4	1035	4	EDAR	2	109545663	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	248607	109545663	133653710	154	6378											
CCDC93	54520	broad.mit.edu	37	chr2	118698795	118698795	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagttcaataaatctcttctGatactgtattagctcggcac	7	9	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118698795	C	C	118698795	3	2	7	1	0	0	0	0	1	0	0	0	2900	1299	45	4	427	4	CCDC93	2	118698795	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	9153132	118698795	124500578	155	6379											
PCDP1	200373	broad.mit.edu	37	chr2	120388542	120388542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcaattactctataggAaacagagcactcattgggaa	8	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120388542	G	G	120388542	1	3	7	0	1	0	0	0	0	0	0	0	11666	261	9	5		5	PCDP1	2	120388542	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1689747	120388542	122810831	156	6380											
PTPN4	5775	broad.mit.edu	37	chr2	120712719	120712719	+	Intron	DEL	T	-	-													acgttttggggtttgtttgaTtttttttttttagctgtata							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120712719	-	-	120712719	6	5	7	0	1	1	0	1	0	0	0	0	12898	1508	52	0		0	PTPN4	2	120712719	Intron	DEL	T	TCGA-05-4390-01A-02D-1753-08	324177	120712719	122486654	157	6381											
IWS1	55677	broad.mit.edu	37	chr2	128252492	128252492	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagtaaagttaattttttCagtgctggctttttttgatt	9	4	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128252492	A	A	128252492	2	1	7	1	0	0	0	0	0	0	0	1	8001	813	29	3		3	IWS1	2	128252492	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	7539773	128252492	114946881	158	6382											
MYO7B	4648	broad.mit.edu	37	chr2	128322932	128322933	+	Missense_Mutation	DNP	TG	CT	CT													aggcatggtgcacaacctccTgatccgctaccagcagcaca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	128322933	CT	CT	128322932	3	2	7	1	0	0	0	0	1	0	0	0	10177	1580	55	5	267	5	MYO7B	2	128322932	Missense_Mutation	DNP	TG	TCGA-05-4390-01A-02D-1753-08	70440	128322932	114876441	159	6383											
SMPD4	55627	broad.mit.edu	37	chr2	130912841	130912841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagggtgccctggggacCgaggtggcaggttggggcca	19	9	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130912841	A	A	130912841	1	1	7	0	1	0	0	0	0	0	0	0	14921	667	23	1		1	SMPD4	2	130912841	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2589909	130912841	112286532	160	6384											
POTEE	445582	broad.mit.edu	37	chr2	131984447	131984447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagcaaaaacagcaagtcGtgaaatttttaatcaagaaa	7	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131984447	A	A	131984447	3	1	7	1	0	0	0	0	1	0	0	0	12360	1145	40	4	876	4	POTEE	2	131984447	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1071606	131984447	111214926	161	6385											
YSK4	80122	broad.mit.edu	37	chr2	135745412	135745412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaatatcctcttccctaaCtgcaggaatattgccttcct	5	13	2	0	rs145468662		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135745412	A	A	135745412	3	1	7	1	0	0	0	0	1	0	0	0	17622	565	20	3	2972	3	YSK4	2	135745412	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3760965	135745412	107453961	162	6386											
TANC1	85461	broad.mit.edu	37	chr2	160020007	160020007	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagatggtccagtcccttAttctcagggctccagctcac	10	13	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160020007	T	T	160020007	3	4	7	1	0	0	0	0	1	0	0	0	15663	449	16	5	918	5	TANC1	2	160020007	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	24274595	160020007	83179366	163	6387											
TANC1	85461	broad.mit.edu	37	chr2	160028721	160028721	+	Frame_Shift_Del	DEL	G	-	-													gcacagctaaaacacctcttGggtctatcagtgctgaaaac							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160028721	-	-	160028721	7	5	7	1	0	1	0	1	0	0	0	0	15663	1348	47	0	1475	0	TANC1	2	160028721	Frame_Shift_Del	DEL	G	TCGA-05-4390-01A-02D-1753-08	8714	160028721	83170652	164	6388											
BAZ2B	29994	broad.mit.edu	37	chr2	160287467	160287467	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcaggagcagagcctgGggcttttgctatgtggaggt	18	7	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160287467	A	A	160287467	3	1	7	1	0	0	0	0	1	0	0	0	1337	1232	43	4	4517	4	BAZ2B	2	160287467	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	258746	160287467	82911906	165	6389											
SCN7A	6332	broad.mit.edu	37	chr2	167334168	167334168	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttcaaaagactctttagtGaagggaacaaggcccttagg	11	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167334168	T	T	167334168	3	4	7	1	0	0	0	0	1	0	0	0	14036	1281	45	3	5105	3	SCN7A	2	167334168	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	7046701	167334168	75865205	166	6390											
XIRP2	129446	broad.mit.edu	37	chr2	168101499	168101499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctggagatgtttccagCatgaggtataaatttgaaaa	10	5	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168101499	A	A	168101499	3	1	7	1	0	0	0	0	1	0	0	0	17557	709	25	3	3627	3	XIRP2	2	168101499	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	767331	168101499	75097874	167	6391											
STK39	27347	broad.mit.edu	37	chr2	168996894	168996894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagccttgaagtcatagcCtctcacctaagaaagaaagc	8	11	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168996894	A	A	168996894	3	1	7	1	0	0	0	0	1	0	0	0	15423	681	24	2	940	2	STK39	2	168996894	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	895395	168996894	74202479	168	6392											
DHRS9	10170	broad.mit.edu	37	chr2	169938082	169938082	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgtacctatcacacacAgggggaaaaatgctcttttg	11	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169938082	T	T	169938082	1	4	7	0	1	0	0	0	0	0	0	0	4538	203	7	5		5	DHRS9	2	169938082	5'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	941188	169938082	73261291	169	6393											
ATP5G3	518	broad.mit.edu	37	chr2	176049379	176049379	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgcctcatggactctgGtgctaaaagaaaaaaaagaa	8	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176049379	T	T	176049379	1	4	7	0	1	0	0	0	0	0	0	0	1159	1276	44	3		3	ATP5G3	2	176049379	5'Flank	SNP	G	TCGA-05-4390-01A-02D-1753-08	6111297	176049379	67149994	170	6394											
HOXD10	3236	broad.mit.edu	37	chr2	176982209	176982209	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccaaagtctcccaggtGgagagccccgaggccaaagg	12	15	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176982209	A	A	176982209	2	1	7	1	0	0	0	0	0	0	0	1	7386	1335	47	4		4	HOXD10	2	176982209	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	932830	176982209	66217164	171	6395											
TTN	7273	broad.mit.edu	37	chr2	179396978	179396978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgacatgaagtcaagttcGcttttgtattctgagagatg	10	5	2	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179396978	T	T	179396978	3	4	7	1	0	0	0	0	1	0	0	0	16861	1078	38	3	3635	3	TTN	2	179396978	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2414769	179396978	63802395	172	6396											
TTN	7273	broad.mit.edu	37	chr2	179459155	179459155	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacagcactgacacggtactCataggtatcaccttctttta	7	11	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179459155	A	A	179459155	4	1	7	1	0	0	0	0	0	1	0	0	16861	835	29	3	50181	3	TTN	2	179459155	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	62177	179459155	63740218	173	6397											
TTN	7273	broad.mit.edu	37	chr2	179460446	179460446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattggtgattggagagcctCcatcatcttctggagaaaac	10	8	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179460446	A	A	179460446	3	1	7	1	0	0	0	0	1	0	0	0	16861	855	30	3	50616	3	TTN	2	179460446	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1291	179460446	63738927	174	6398											
TTN	7273	broad.mit.edu	37	chr2	179536845	179536845	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctacttcatgaaactcgcCttcttcaaaatattcttcaa	2	11	6	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179536845	A	A	179536845	1	1	7	1	0	0	0	0	0	0	0	0	16861	681	24	2		2	TTN	2	179536845	Translation_Start_Site	SNP	C	TCGA-05-4390-01A-02D-1753-08	76399	179536845	63662528	175	6399											
TTN	7273	broad.mit.edu	37	chr2	179546142	179546142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttcttaggaatgggcaCtggtactttttcttcaggga	12	6	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179546142	A	A	179546142	3	1	7	1	0	0	0	0	1	0	0	0	16861	565	20	3	71225	3	TTN	2	179546142	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	9297	179546142	63653231	176	6400											
DNAH7	56171	broad.mit.edu	37	chr2	196913024	196913024	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattgaagttcttaccatgGgactgttcatttttaacact	6	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196913024	A	A	196913024	2	1	7	1	0	0	0	0	0	0	0	1	4646	1219	43	4		4	DNAH7	2	196913024	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	17366882	196913024	46286349	177	6401											
ICA1L	130026	broad.mit.edu	37	chr2	203644316	203644316	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgggtttgaaagtggatcCaagtctgcaaacagattgaa	11	6	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203644316	T	T	203644316	2	4	7	1	0	0	0	0	0	0	0	1	7548	593	21	4		4	ICA1L	2	203644316	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	6731292	203644316	39555057	178	6402											
CD28	940	broad.mit.edu	37	chr2	204599581	204599581	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccccgggcccacccgCaagcattaccagccctatgc	9	21	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204599581	G	G	204599581	2	3	7	1	0	0	0	0	0	0	0	1	3023	697	25	4		4	CD28	2	204599581	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	955265	204599581	38599792	179	6403											
NRP2	8828	broad.mit.edu	37	chr2	206617504	206617504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatagtaccactgtggctGttctctgaacccatttcatt	6	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206617504	T	T	206617504	1	4	7	0	1	0	0	0	0	0	0	0	10756	1392	48	3		3	NRP2	2	206617504	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2017923	206617504	36581869	180	6404											
DYTN	391475	broad.mit.edu	37	chr2	207527692	207527692	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcttgcagttcctcttccTccagctcatcctttctctcc	4	17	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207527692	C	C	207527692	3	2	7	1	0	0	0	0	1	0	0	0	4901	1551	54	5	176	5	DYTN	2	207527692	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	910188	207527692	35671681	181	6405											
MAP2	4133	broad.mit.edu	37	chr2	210558179	210558179	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagggatactttcacccccAgtggacaggaacctatactt	8	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210558179	T	T	210558179	3	4	7	1	0	0	0	0	1	0	0	0	9327	188	7	5	1299	5	MAP2	2	210558179	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	3030487	210558179	32641194	182	6406											
LANCL1	10314	broad.mit.edu	37	chr2	211336397	211336397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatctgcaaattaactatGtaatattgaaaatcaatttt	3	5	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211336397	A	A	211336397	1	1	7	0	1	0	0	0	0	0	0	0	8692	1392	48	4		4	LANCL1	2	211336397	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	778218	211336397	31862976	183	6407											
XRCC5	7520	broad.mit.edu	37	chr2	217070015	217070015	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggatgcggccattcaagggGagccaaaatctcaagaaatt	11	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217070015	T	T	217070015	1	4	7	0	1	0	0	0	0	0	0	0	17583	1189	41	3		3	XRCC5	2	217070015	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	5733618	217070015	26129358	184	6408											
MRPL44	65080	broad.mit.edu	37	chr2	224828609	224828609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacttactaggcagtctgGtggcaccacagctttgcctt	10	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224828609	A	A	224828609	3	1	7	1	0	0	0	0	1	0	0	0	9902	1261	44	4	795	4	MRPL44	2	224828609	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	7758594	224828609	18370764	185	6409											
DGKD	8527	broad.mit.edu	37	chr2	234370997	234370997	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttctcttcctctctagtatCcgagaaatagctcagtctca	5	13	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234370997	A	A	234370997	2	1	7	1	0	0	0	0	0	0	0	1	4507	845	30	3		3	DGKD	2	234370997	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	9542388	234370997	8828376	186	6410											
HDAC4	9759	broad.mit.edu	37	chr2	240097963	240097963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcacccctccctctgcCcggcctccctccctctgccc	6	27	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240097963	A	A	240097963	1	1	7	0	1	0	0	0	0	0	0	0	7076	638	22	2		2	HDAC4	2	240097963	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	5726966	240097963	3101410	187	6411											
PRR21	643905	broad.mit.edu	37	chr2	240982289	240982289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggatgaagggccatggGtgaagagccgtggatgagcc	18	8	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240982289	T	T	240982289	3	4	7	1	0	0	0	0	1	0	0	0	12698	1252	44	3	1061	3	PRR21	2	240982289	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	884326	240982289	2217084	188	6412											
ANKMY1	51281	broad.mit.edu	37	chr2	241463637	241463637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcctggaagtggccgccCtcgtggctgcctgagacgcg	16	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241463637	A	A	241463637	3	1	7	1	0	0	0	0	1	0	0	0	634	680	24	2	1639	2	ANKMY1	2	241463637	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	481348	241463637	1735736	189	6413											
CAPN10	11132	broad.mit.edu	37	chr2	241530258	241530258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccgggacagccgagctgGgccgaccaggagtaccgggg	17	14	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241530258	T	T	241530258	3	4	7	1	0	0	0	0	1	0	0	0	2649	1241	43	2	310	2	CAPN10	2	241530258	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	66621	241530258	1669115	190	6414											
KIF1A	547	broad.mit.edu	37	chr2	241725747	241725747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccagtgagtccctccaCccacctggccttgttccctg	9	17	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241725747	A	A	241725747	1	1	7	0	1	0	0	0	0	0	0	0	8353	522	18	3		3	KIF1A	2	241725747	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	195489	241725747	1473626	191	6415											
PASK	23178	broad.mit.edu	37	chr2	242066563	242066563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcttggccacggcagcCccagcccaaaggtctgaacc	13	15	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242066563	A	A	242066563	2	1	7	1	0	0	0	0	0	0	0	1	11566	610	22	2		2	PASK	2	242066563	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	340816	242066563	1132810	192	6416											
ITPR1	3708	broad.mit.edu	37	chr3	4695532	4695532	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctttttcatcaggtagacCctgactttgaggaagaatgc	9	8	3	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4695532	T	T	4695532	3	4	7	1	0	0	0	0	1	0	0	0	7990	623	22	4	996	4	ITPR1	3	4695532	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08		4695532	193326898	193	6417											
C3orf24	115795	broad.mit.edu	37	chr3	10145908	10145908	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatggtgtgagtaaatgggGatcaaatgaggaccctttac	13	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10145908	T	T	10145908	1	4	7	0	1	0	0	0	0	0	0	0	2239	1189	41	3		3	C3orf24	3	10145908	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	5450376	10145908	187876522	194	6418											
FGD5	152273	broad.mit.edu	37	chr3	14861826	14861826	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgatgtggtggtcgtGctggaggaggaggccttgga	19	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14861826	A	A	14861826	2	1	7	1	0	0	0	0	0	0	0	1	5893	1306	46	4		4	FGD5	3	14861826	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	4715918	14861826	183160604	195	6419											
TOP2B	7155	broad.mit.edu	37	chr3	25665829	25665829	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgagggcttgcagcatctttGccaccatgaagccgagttcc	11	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25665829	C	C	25665829	2	2	7	1	0	0	0	0	0	0	0	1	16490	1306	46	4		4	TOP2B	3	25665829	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	10804003	25665829	172356601	196	6420											
LRRFIP2	9209	broad.mit.edu	37	chr3	37114278	37114278	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagcccaatttcatttcaTaccccaatttttttatcttt	1	11	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37114278	G	G	37114278	1	3	7	0	1	0	0	0	0	0	0	0	9115	1421	49	5		5	LRRFIP2	3	37114278	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	11448449	37114278	160908152	197	6421											
VILL	50853	broad.mit.edu	37	chr3	38044020	38044022	+	In_Frame_Del	DEL	TCT	-	-													atccctcaactccagtgacaTcttcttgctggtcacagcca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38044022	-	-	38044020	7	5	7	1	0	1	0	1	0	0	0	0	17292	1435	50	0	1663	0	VILL	3	38044020	In_Frame_Del	DEL	TCT	TCGA-05-4390-01A-02D-1753-08	929742	38044020	159978410	198	6422											
SCN5A	6331	broad.mit.edu	37	chr3	38662466	38662466	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcggtgaaggtgtacctgGgcaggagaggccggtggggt	22	6	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38662466	C	C	38662466	1	2	7	0	1	0	0	0	0	0	0	0	14035	1247	43	4		4	SCN5A	3	38662466	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	618446	38662466	159359964	199	6423											
SCN10A	6336	broad.mit.edu	37	chr3	38798142	38798142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtctgcaaccttcttcaCaaagcttccactcctcacaa	3	16	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38798142	A	A	38798142	1	1	7	0	1	0	0	0	0	0	0	0	14025	493	17	3		3	SCN10A	3	38798142	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	135676	38798142	159224288	200	6424											
ZNF445	353274	broad.mit.edu	37	chr3	44541551	44541551	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attacatttatagggtttctCcccattatggagtctctggt	8	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44541551	A	A	44541551	1	1	7	0	1	0	0	0	0	0	0	0	18045	870	30	3		3	ZNF445	3	44541551	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	5743409	44541551	153480879	201	6425											
MAP4	4134	broad.mit.edu	37	chr3	47908590	47908590	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaacatgggagcatcaagGtcccctcactttgctagtct	8	12	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47908590	C	C	47908590	1	2	7	0	1	0	0	0	0	0	0	0	9350	1276	44	4		4	MAP4	3	47908590	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3367039	47908590	150113840	202	6426											
COL7A1	1294	broad.mit.edu	37	chr3	48605909	48605909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctggggacagggggcccCtgtgggagcaggggcatctt	18	11	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48605909	A	A	48605909	1	1	7	0	1	0	0	0	0	0	0	0	3736	696	24	2		2	COL7A1	3	48605909	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	697319	48605909	149416521	203	6427											
COL7A1	1294	broad.mit.edu	37	chr3	48628841	48628841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggaggtacactcagacCcctcaggctggaacttcagt	12	12	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48628841	A	A	48628841	1	1	7	0	1	0	0	0	0	0	0	0	3736	638	22	2		2	COL7A1	3	48628841	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	22932	48628841	149393589	204	6428											
USP4	7375	broad.mit.edu	37	chr3	49343230	49343230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataggcttctgcaatttccCctttcatccccagagggttg	8	13	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49343230	A	A	49343230	3	1	7	1	0	0	0	0	1	0	0	0	17198	623	22	2	1901	2	USP4	3	49343230	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	714389	49343230	148679200	205	6429											
SEMA3F	6405	broad.mit.edu	37	chr3	50225348	50225348	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccccgccacccccaggcGcaggccccccaacgcctcct	9	25	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50225348	A	A	50225348	3	1	7	1	0	0	0	0	1	0	0	0	14142	1087	38	4	2228	4	SEMA3F	3	50225348	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	882118	50225348	147797082	206	6430											
RAD54L2	23132	broad.mit.edu	37	chr3	51679122	51679122	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacccttgccatgatgccCaggcagtatgtcgggtatac	12	11	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51679122	T	T	51679122	4	4	7	1	0	0	0	0	0	1	0	0	13102	595	21	4	2591	4	RAD54L2	3	51679122	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1453774	51679122	146343308	207	6431											
IQCF1	132141	broad.mit.edu	37	chr3	51895639	51895639	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttactcatgccagaccttgGgaagcagagaaatcagggct	12	9	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51895639	A	A	51895639	1	1	7	0	1	0	0	0	0	0	0	0	7877	1247	43	4		4	IQCF1	3	51895639	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	216517	51895639	146126791	208	6432											
IQCF2	389123	broad.mit.edu	37	chr3	51897343	51897343	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggccactgtgtggtcaCagccactcacctgcagttcc	10	16	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51897343	T	T	51897343	3	4	7	1	0	0	0	0	1	0	0	0	7878	478	17	4	462	4	IQCF2	3	51897343	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1704	51897343	146125087	209	6433											
RFT1	91869	broad.mit.edu	37	chr3	53156537	53156537	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttcaagcagctgcaaccaGatccagcccaggaataagga	9	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53156537	T	T	53156537	2	4	7	1	0	0	0	0	0	0	0	1	13365	932	33	3		3	RFT1	3	53156537	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	1259194	53156537	144865893	210	6434											
CACNA2D3	55799	broad.mit.edu	37	chr3	54786654	54786654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcacatacctcattggacGagaggctgcgtttgcagaca	10	11	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54786654	T	T	54786654	3	4	7	1	0	0	0	0	1	0	0	0	2576	1058	37	3	1242	3	CACNA2D3	3	54786654	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1630117	54786654	143235776	211	6435											
ERC2	26059	broad.mit.edu	37	chr3	56044363	56044363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacaaaagaaaggttactaCattccccaagccttcataca	4	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56044363	T	T	56044363	1	4	7	0	1	0	0	0	0	0	0	0	5253	493	17	4		4	ERC2	3	56044363	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1257709	56044363	141978067	212	6436											
PTPRG	5793	broad.mit.edu	37	chr3	62257223	62257223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgggccctgtgttggtgCactgcaggtagggtctagga	16	8	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62257223	A	A	62257223	3	1	7	1	0	0	0	0	1	0	0	0	12910	710	25	3	3257	3	PTPRG	3	62257223	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	6212860	62257223	135765207	213	6437											
CADPS	8618	broad.mit.edu	37	chr3	62502333	62502333	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatacctaaaaaagacaaaAttcttcaggttgcctaaatt	4	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62502333	G	G	62502333	1	3	7	0	1	0	0	0	0	0	0	0	2596	116	4	5		5	CADPS	3	62502333	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	245110	62502333	135520097	214	6438											
ADAMTS9	56999	broad.mit.edu	37	chr3	64672544	64672544	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagttaatgctccgtcgCgttcttttgaagtggacgtt	12	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64672544	T	T	64672544	2	4	7	1	0	0	0	0	0	0	0	1	273	755	27	4		4	ADAMTS9	3	64672544	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2170211	64672544	133349886	215	6439											
EIF4E3	317649	broad.mit.edu	37	chr3	71748851	71748851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggatattattgtatacactCcaaaatatctttaaaagaaa	5	5	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71748851	A	A	71748851	3	1	7	1	0	0	0	0	1	0	0	0	5073	856	30	3	436	3	EIF4E3	3	71748851	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	7076307	71748851	126273579	216	6440											
HTR1F	3355	broad.mit.edu	37	chr3	88040284	88040284	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgagcaatcacagatgctGttgagtatgccaggaaaagg	12	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88040284	A	A	88040284	3	1	7	1	0	0	0	0	1	0	0	0	7510	1377	48	4	387	4	HTR1F	3	88040284	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	16291433	88040284	109982146	217	6441											
EPHA3	2042	broad.mit.edu	37	chr3	89478173	89478173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacatctctataatcctcaGgtaaatccaactatattata	2	9	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89478173	T	T	89478173	1	4	7	0	1	0	0	0	0	0	0	0	5210	1015	35	2		2	EPHA3	3	89478173	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1437889	89478173	108544257	218	6442											
EPHA6	285220	broad.mit.edu	37	chr3	97202955	97202955	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattccttaatttctttgtaActggtttatcaacatactat	3	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97202955	T	T	97202955	1	4	7	0	1	0	0	0	0	0	0	0	5213	58	2	5		5	EPHA6	3	97202955	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	7724782	97202955	100819475	219	6443											
EPHA6	285220	broad.mit.edu	37	chr3	97329564	97329564	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataatttagttgccacagcTgggtatctcttaactgcagc	8	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97329564	A	A	97329564	1	1	7	0	1	0	0	0	0	0	0	0	5213	1595	55	5		5	EPHA6	3	97329564	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	126609	97329564	100692866	220	6444											
ABI3BP	25890	broad.mit.edu	37	chr3	100617486	100617486	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggcccctgactttgttcCcctcacacctagaacaggct	8	16	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100617486	T	T	100617486	1	4	7	0	1	0	0	0	0	0	0	0	91	638	22	4		4	ABI3BP	3	100617486	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3287922	100617486	97404944	221	6445											
IMPG2	50939	broad.mit.edu	37	chr3	100963380	100963380	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaccctgaacctaaaccacCgtcaaatattaactcttttt	3	12	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100963380	T	T	100963380	3	4	7	1	0	0	0	0	1	0	0	0	7799	652	23	4	1958	4	IMPG2	3	100963380	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	345894	100963380	97059050	222	6446											
ZPLD1	131368	broad.mit.edu	37	chr3	102157407	102157407	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagttcaacggctacaacTgtgatgccaacctccacagt	7	14	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102157407	A	A	102157407	3	1	7	1	0	0	0	0	1	0	0	0	18350	1580	55	5	130	5	ZPLD1	3	102157407	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	1194027	102157407	95865023	223	6447											
TRAT1	50852	broad.mit.edu	37	chr3	108549715	108549715	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatggaagcagacaattttaTgaaatgtcattcaacaggat	8	5	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108549715	A	A	108549715	1	1	7	0	1	0	0	0	0	0	0	0	16590	1479	51	5		5	TRAT1	3	108549715	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	6392308	108549715	89472715	224	6448											
MORC1	27136	broad.mit.edu	37	chr3	108698419	108698419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgtgctttgagaagacGctggcgaagaagcaacttta	13	7	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108698419	T	T	108698419	3	4	7	1	0	0	0	0	1	0	0	0	9795	1087	38	3	554	3	MORC1	3	108698419	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	148704	108698419	89324011	225	6449											
CCDC80	151887	broad.mit.edu	37	chr3	112358661	112358661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccgtcctccgtggctgCctctaatagtggcatggggg	13	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112358661	A	A	112358661	3	1	7	1	0	0	0	0	1	0	0	0	2882	739	26	3	2788	3	CCDC80	3	112358661	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3660242	112358661	85663769	226	6450											
WDR52	55779	broad.mit.edu	37	chr3	113084979	113084979	+	Silent	SNP	C	A	A													ttgccatctgctccagcagtCaccaagaaacgatcatcaaa							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113084979	A	A	113084979	2	1	7	1	0	0	0	0	0	0	0	1	17431	813	29	3		3	WDR52	3	113084979	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	726318	113084979	84937451	227	6451	24	2									
WDR52	55779	broad.mit.edu	37	chr3	113084981	113084981	+	Missense_Mutation	SNP	C	A	A													gccatctgctccagcagtcaCcaagaaacgatcatcaaagc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113084981	A	A	113084981	3	1	7	1	0	0	0	0	1	0	0	0	17431	507	18	3	3027	3	WDR52	3	113084981	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2	113084981	84937449	228	6452	24	2									
KIAA1407	57577	broad.mit.edu	37	chr3	113724429	113724429	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctctgtgcttctgtgacTgctaaggcatgctctgctgc	12	11	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113724429	A	A	113724429	2	1	7	1	0	0	0	0	0	0	0	1	8299	1567	55	5		5	KIAA1407	3	113724429	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	639448	113724429	84298001	229	6453											
DRD3	1814	broad.mit.edu	37	chr3	113890579	113890579	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtctactcacctccaggtaTaccacccagggcatcaccaa	6	16	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113890579	A	A	113890579	2	1	7	1	0	0	0	0	0	0	0	1	4798	1393	49	5		5	DRD3	3	113890579	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	166150	113890579	84131851	230	6454											
IGSF11	152404	broad.mit.edu	37	chr3	118648842	118648842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggccttaaaagagtacacGcacattgacaatgccacctt	7	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118648842	T	T	118648842	1	4	7	0	1	0	0	0	0	0	0	0	7668	1102	38	3		3	IGSF11	3	118648842	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4758263	118648842	79373588	231	6455											
C3orf15	89876	broad.mit.edu	37	chr3	119462963	119462963	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggctgagcgccagcggCgggtacgagaggctgaagag	19	9	0	4	rs139653997		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119462963	T	T	119462963	3	4	7	1	0	0	0	0	1	0	0	0	2231	759	27	4	1876	4	C3orf15	3	119462963	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	814121	119462963	78559467	232	6456											
IQCB1	9657	broad.mit.edu	37	chr3	121491396	121491396	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaacgaaagtaaaatgaGcacatactcattagctgttc	8	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121491396	A	A	121491396	1	1	7	0	1	0	0	0	0	0	0	0	7873	986	34	4		4	IQCB1	3	121491396	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2028433	121491396	76531034	233	6457											
CD86	942	broad.mit.edu	37	chr3	121828008	121828008	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaggcttctctggccttaGagccctggggagaggctggc	15	11	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121828008	A	A	121828008	1	1	7	0	1	0	0	0	0	0	0	0	3073	957	33	4		4	CD86	3	121828008	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	336612	121828008	76194422	234	6458											
CASR	846	broad.mit.edu	37	chr3	121973135	121973135	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaagaagggggacattatCcttggggggctctttcctat	12	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121973135	A	A	121973135	2	1	7	1	0	0	0	0	0	0	0	1	2708	845	30	3		3	CASR	3	121973135	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	145127	121973135	76049295	235	6459											
PARP14	54625	broad.mit.edu	37	chr3	122446791	122446791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccggctccgtgccacacGtcaatcgaaatggctttaac	9	13	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122446791	T	T	122446791	3	4	7	1	0	0	0	0	1	0	0	0	11552	1145	40	3	5136	3	PARP14	3	122446791	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	473656	122446791	75575639	236	6460											
CCDC14	64770	broad.mit.edu	37	chr3	123634422	123634422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatttagatagctcattatgGaagtgtgagcaggagctggg	14	4	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123634422	T	T	123634422	3	4	7	1	0	0	0	0	1	0	0	0	2799	1174	41	3	799	3	CCDC14	3	123634422	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1187631	123634422	74388008	237	6461											
ALDH1L1	10840	broad.mit.edu	37	chr3	125877523	125877523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggcccctctccataacCcacccacacgcagccacctc	4	22	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125877523	A	A	125877523	1	1	7	0	1	0	0	0	0	0	0	0	494	638	22	2		2	ALDH1L1	3	125877523	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2243101	125877523	72144907	238	6462											
CHCHD6	84303	broad.mit.edu	37	chr3	126485925	126485925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtagttgtactctgtccGccgtgcccgggcgatgaact	12	12	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126485925	T	T	126485925	1	4	7	0	1	0	0	0	0	0	0	0	3351	1102	38	3		3	CHCHD6	3	126485925	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	608402	126485925	71536505	239	6463											
PLXND1	23129	broad.mit.edu	37	chr3	129293305	129293305	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcactgggaacagtcgggGctgcccatggcacagttata	14	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129293305	T	T	129293305	3	4	7	1	0	0	0	0	1	0	0	0	12222	1194	42	3	3318	3	PLXND1	3	129293305	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2807380	129293305	68729125	240	6464											
ATP2C1	27032	broad.mit.edu	37	chr3	130713029	130713029	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaattcaactggaaaagAattagtatttaaacattagg	8	3	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130713029	T	T	130713029	1	4	7	0	1	0	0	0	0	0	0	0	1147	261	9	5		5	ATP2C1	3	130713029	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1419724	130713029	67309401	241	6465											
PIK3CB	5291	broad.mit.edu	37	chr3	138461382	138461382	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattacaaaatatttcttAaaaaaatataatcctacctg	1	6	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138461382	T	T	138461382	1	4	7	0	1	0	0	0	0	0	0	0	12009	377	13	5		5	PIK3CB	3	138461382	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	7748353	138461382	59561048	242	6466											
CLSTN2	64084	broad.mit.edu	37	chr3	140251280	140251280	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaccaacgactggcccattCatccatctcacatagccatg	6	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140251280	A	A	140251280	3	1	7	1	0	0	0	0	1	0	0	0	3594	826	29	3	1493	3	CLSTN2	3	140251280	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1789898	140251280	57771150	243	6467											
CLSTN2	64084	broad.mit.edu	37	chr3	140277558	140277558	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccaggccatcgagcccCggatcaccctccggggcaca	10	19	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140277558	A	A	140277558	2	1	7	1	0	0	0	0	0	0	0	1	3594	643	23	1		1	CLSTN2	3	140277558	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	26278	140277558	57744872	244	6468											
TRIM42	287015	broad.mit.edu	37	chr3	140419870	140419870	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacaaagtagacatatacaCacacatatatgtatgtatat	4	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140419870	T	T	140419870	1	4	7	0	1	0	0	0	0	0	0	0	16641	493	17	4		4	TRIM42	3	140419870	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	142312	140419870	57602560	245	6469											
CHST2	9435	broad.mit.edu	37	chr3	142840944	142840944	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcggtacgaggacctggTgggagaccccgtcaagacac	16	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142840944	A	A	142840944	3	1	7	1	0	0	0	0	1	0	0	0	3435	1696	59	5	1288	5	CHST2	3	142840944	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	2421074	142840944	55181486	246	6470											
GPR149	344758	broad.mit.edu	37	chr3	154055976	154055976	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttacctcataggtagaaaGagatagggttttccctgtag	11	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154055976	A	A	154055976	3	1	7	1	0	0	0	0	1	0	0	0	6719	942	33	4	491	4	GPR149	3	154055976	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	11215032	154055976	43966454	247	6471											
GMPS	8833	broad.mit.edu	37	chr3	155632279	155632279	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgaagatagaaccccaCggaaaagaattagcaaaacg	9	8	0	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155632279	A	A	155632279	2	1	7	1	0	0	0	0	0	0	0	1	6562	527	19	3		3	GMPS	3	155632279	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1576303	155632279	42390151	248	6472											
PPM1L	151742	broad.mit.edu	37	chr3	160783208	160783208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcacaacgtgtttgattGctctgctatcagataaagac	9	9	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160783208	T	T	160783208	3	4	7	1	0	0	0	0	1	0	0	0	12445	1319	46	3	602	3	PPM1L	3	160783208	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	5150929	160783208	37239222	249	6473											
OTOL1	131149	broad.mit.edu	37	chr3	161215026	161215026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgagaggtaggttgtcGggtgaaattgccccaggagt	17	5	0	2	rs140387418	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161215026	T	T	161215026	1	4	7	0	1	0	0	0	0	0	0	0	11398	1131	39	1		1	OTOL1	3	161215026	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	431818	161215026	36807404	250	6474											
SI	6476	broad.mit.edu	37	chr3	164700716	164700716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaatgaactaggattacaGgcatgagccaccccacccag	8	15	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164700716	T	T	164700716	1	4	7	0	1	0	0	0	0	0	0	0	14410	1015	35	2		2	SI	3	164700716	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3485690	164700716	33321714	251	6475											
SI	6476	broad.mit.edu	37	chr3	164700883	164700883	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatatattgttatttccaaaGaagaaccatagtaaatacct	5	6	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164700883	T	T	164700883	1	4	7	0	1	0	0	0	0	0	0	0	14410	957	33	3		3	SI	3	164700883	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	167	164700883	33321547	252	6476											
SI	6476	broad.mit.edu	37	chr3	164738908	164738908	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatttaacacgtcttaaatTtttttgtgtgatgctactct	5	6	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164738908	A	A	164738908	1	1	7	0	1	0	0	0	0	0	0	0	14410	1856	64	5		5	SI	3	164738908	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	38025	164738908	33283522	253	6477											
SI	6476	broad.mit.edu	37	chr3	164758880	164758880	+	Frame_Shift_Del	DEL	A	-	-													ccaaaaaatgcaggatcctgAtgctgtgagatagaaagaga							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164758880	-	-	164758880	7	5	7	1	0	1	0	1	0	0	0	0	14410	330	12	0	3600	0	SI	3	164758880	Frame_Shift_Del	DEL	A	TCGA-05-4390-01A-02D-1753-08	19972	164758880	33263550	254	6478											
SI	6476	broad.mit.edu	37	chr3	164792458	164792458	+	Intron	DEL	G	-	-													aagtagaatcactaatttctGggggaggaaaaaactcaata							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164792458	-	-	164792458	6	5	7	0	1	1	0	1	0	0	0	0	14410	1363	47	0		0	SI	3	164792458	Intron	DEL	G	TCGA-05-4390-01A-02D-1753-08	33578	164792458	33229972	255	6479											
SLITRK3	22865	broad.mit.edu	37	chr3	164906717	164906717	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatgcactggttggtgcCccaataaggtgagaatctcc	13	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164906717	A	A	164906717	2	1	7	1	0	0	0	0	0	0	0	1	14858	610	22	2		2	SLITRK3	3	164906717	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	114259	164906717	33115713	256	6480											
SAMD7	344658	broad.mit.edu	37	chr3	169637321	169637322	+	Missense_Mutation	DNP	AG	TT	TT													tttattgacaccaacagggcAgcagacaatcccactgatcc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	169637322	TT	TT	169637321	3	4	7	1	0	0	0	0	1	0	0	0	13935	188	7	5	37	5	SAMD7	3	169637321	Missense_Mutation	DNP	AG	TCGA-05-4390-01A-02D-1753-08	4730604	169637321	28385109	257	6481											
NLGN1	22871	broad.mit.edu	37	chr3	173322536	173322536	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctatcacaaaaattggatGatgtggacccactggtggct	11	8	1	1	rs79808130		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173322536	T	T	173322536	3	4	7	1	0	0	0	0	1	0	0	0	10556	1290	45	3	150	3	NLGN1	3	173322536	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3685215	173322536	24699894	258	6482											
MCF2L2	23101	broad.mit.edu	37	chr3	182947468	182947468	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatacctgttgtgaaattcGtaaagttctctaatattccc	5	8	1	1	rs149684646	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182947468	T	T	182947468	4	4	7	1	0	0	0	0	0	1	0	0	9473	1140	40	3	1369	3	MCF2L2	3	182947468	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	9624932	182947468	15074962	259	6483											
MAP6D1	79929	broad.mit.edu	37	chr3	183535700	183535700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcataattgcattttacaCcatgaaaatctggctcctaa	6	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183535700	A	A	183535700	1	1	7	0	1	0	0	0	0	0	0	0	9357	522	18	3		3	MAP6D1	3	183535700	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	588232	183535700	14486730	260	6484											
HTR3D	200909	broad.mit.edu	37	chr3	183754160	183754160	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtccttctcccacacagcatCagtgtggatcagacacctgc	8	15	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183754160	A	A	183754160	1	1	7	0	1	0	0	0	0	0	0	0	7517	841	29	3		3	HTR3D	3	183754160	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	218460	183754160	14268270	261	6485											
EPHB3	2049	broad.mit.edu	37	chr3	184290644	184290644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtcaacaccaaggtgcGcagctttgggccactttcca	10	14	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184290644	T	T	184290644	3	4	7	1	0	0	0	0	1	0	0	0	5218	1087	38	3	546	3	EPHB3	3	184290644	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	536484	184290644	13731786	262	6486											
SENP2	59343	broad.mit.edu	37	chr3	185339769	185339769	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatcctaggaagctgtgtgGatggtagtctaatgtgtagt	13	5	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185339769	T	T	185339769	1	4	7	0	1	0	0	0	0	0	0	0	14160	1189	41	3		3	SENP2	3	185339769	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1049125	185339769	12682661	263	6487											
ATP13A5	344905	broad.mit.edu	37	chr3	193036894	193036894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctgtgggaaattcttgGgcactgccagggtagaagaa	14	7	1	2	rs74371245	byFrequency;by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193036894	T	T	193036894	3	4	7	1	0	0	0	0	1	0	0	0	1131	1232	43	2	1791	2	ATP13A5	3	193036894	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	7697125	193036894	4985536	264	6488											
LRRC15	131578	broad.mit.edu	37	chr3	194080235	194080236	+	Missense_Mutation	DNP	TC	AT	AT													tagtcagatcagtgtagtctTccacagggctggttagctca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	194080236	AT	AT	194080235	3	1	7	1	0	0	0	0	1	0	0	0	9057	1783	62	5	211	5	LRRC15	3	194080235	Missense_Mutation	DNP	TC	TCGA-05-4390-01A-02D-1753-08	1043341	194080235	3942195	265	6489											
TFRC	7037	broad.mit.edu	37	chr3	195794416	195794416	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttttctgcagcagctctgGagattgtctggacaggtata	12	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195794416	C	C	195794416	3	2	7	1	0	0	0	0	1	0	0	0	15935	1174	41	4	1313	4	TFRC	3	195794416	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1714181	195794416	2228014	266	6490											
ZNF595	152687	broad.mit.edu	37	chr4	53452	53452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccggcgggaaatggcggCggcgggaccgagtctgcgaa	19	10	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53452	A	A	53452	1	1	7	0	1	0	0	0	0	0	0	0	18152	783	27	3		3	ZNF595	4	53452	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08		53452	191100824	267	6491											
RNF212	285498	broad.mit.edu	37	chr4	1066813	1066813	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggaagtgttttagagttgGtgagttccccgtgccttcca	12	8	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1066813	A	A	1066813	3	1	7	1	0	0	0	0	1	0	0	0	13587	1261	44	4	154	4	RNF212	4	1066813	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1013361	1066813	190087463	268	6492											
MAEA	10296	broad.mit.edu	37	chr4	1316333	1316333	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgggagtgggtcggggccGaggctgcgccacctgccctg	20	12	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1316333	T	T	1316333	1	4	7	0	1	0	0	0	0	0	0	0	9241	1073	37	3		3	MAEA	4	1316333	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	249520	1316333	189837943	269	6493											
TACC3	10460	broad.mit.edu	37	chr4	1733067	1733067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtcacacacagtctgcccGgaggggatcccgtgagcact	12	14	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1733067	T	T	1733067	1	4	7	0	1	0	0	0	0	0	0	0	15622	1131	39	1		1	TACC3	4	1733067	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	416734	1733067	189421209	270	6494											
EVC	2121	broad.mit.edu	37	chr4	5746827	5746827	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaactattgtttaaaaatAttttgtgaaatttgaaaaat	4	1	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5746827	G	G	5746827	1	3	7	0	1	0	0	0	0	0	0	0	5327	464	16	5		5	EVC	4	5746827	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	4013760	5746827	185407449	271	6495											
HS3ST1	9957	broad.mit.edu	37	chr4	11401268	11401268	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgacgtgaaatacgcgGgggtcttctccactgtgagc	15	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11401268	A	A	11401268	3	1	7	1	0	0	0	0	1	0	0	0	7430	1232	43	4	565	4	HS3ST1	4	11401268	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	5654441	11401268	179753008	272	6496											
LDB2	9079	broad.mit.edu	37	chr4	16597466	16597466	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctccttcaaacacagtgcTaaagtaacgggggatgaggg	12	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16597466	C	C	16597466	3	2	7	1	0	0	0	0	1	0	0	0	8768	1522	53	5	986	5	LDB2	4	16597466	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	5196198	16597466	174556810	273	6497											
CHRNA9	55584	broad.mit.edu	37	chr4	40355911	40355911	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgactaatacctttctcagAatgtatccctgttgttaagt	6	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40355911	C	C	40355911	1	2	7	0	1	0	0	0	0	0	0	0	3420	261	9	5		5	CHRNA9	4	40355911	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	23758445	40355911	150798365	274	6498											
BEND4	389206	broad.mit.edu	37	chr4	42145907	42145907	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgctttacgcaagaaaTcatggactgagaatggttgg	11	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42145907	A	A	42145907	3	1	7	1	0	0	0	0	1	0	0	0	1405	1435	50	5	1028	5	BEND4	4	42145907	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	1789996	42145907	149008369	275	6499											
GABRB1	2560	broad.mit.edu	37	chr4	47428053	47428053	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaggtctgttctaatggttCcatttagactactttcctct	7	9	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47428053	A	A	47428053	1	1	7	0	1	0	0	0	0	0	0	0	6226	870	30	3		3	GABRB1	4	47428053	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	5282146	47428053	143726223	276	6500											
SRP72	6731	broad.mit.edu	37	chr4	57333788	57333788	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtctccccgccccgccccTcgtctcctccaagatggcga	9	20	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57333788	A	A	57333788	1	1	7	0	1	0	0	0	0	0	0	0	15275	1566	54	5		5	SRP72	4	57333788	5'UTR	SNP	T	TCGA-05-4390-01A-02D-1753-08	9905735	57333788	133820488	277	6501											
EPHA5	2044	broad.mit.edu	37	chr4	66535311	66535311	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggctggccaggagggtccgGagtgcggcgcacaggagaag	21	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66535311	T	T	66535311	2	4	7	1	0	0	0	0	0	0	0	1	5212	1161	41	3		3	EPHA5	4	66535311	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	9201523	66535311	124618965	278	6502											
UBA6	55236	broad.mit.edu	37	chr4	68562390	68562390	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcatcatcgatttccacaGatgctgttgacataatgggc	9	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68562390	C	C	68562390	3	2	7	1	0	0	0	0	1	0	0	0	16958	942	33	4	3179	4	UBA6	4	68562390	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2027079	68562390	122591886	279	6503											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68935753	68935753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaaaacatgaattagttGgcagaagaatatattcccat	7	6	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68935753	T	T	68935753	1	4	7	0	1	0	0	0	0	0	0	0	16366	1363	47	2		2	TMPRSS11F	4	68935753	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	373363	68935753	122218523	280	6504											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68938049	68938049	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaaagacttacgtgtgagtCtaaatgatggtttgtttatg	10	3	1	3	rs150716612	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68938049	G	G	68938049	3	3	7	1	0	0	0	0	1	0	0	0	16366	913	32	4	834	4	TMPRSS11F	4	68938049	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2296	68938049	122216227	281	6505											
UGT2B15	7366	broad.mit.edu	37	chr4	69513061	69513061	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggggcttcattggttggtCatgatgaattcttgataatt	11	5	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69513061	T	T	69513061	3	4	7	1	0	0	0	0	1	0	0	0	17084	826	29	4	1859	4	UGT2B15	4	69513061	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	575012	69513061	121641215	282	6506											
SULT1B1	27284	broad.mit.edu	37	chr4	70620409	70620409	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatgttcttaatccagggaGagtcatttccaacattggaa	9	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70620409	T	T	70620409	3	4	7	1	0	0	0	0	1	0	0	0	15494	942	33	3	658	3	SULT1B1	4	70620409	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1107348	70620409	120533867	283	6507											
CSN1S1	1446	broad.mit.edu	37	chr4	70800003	70800003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagaactcactctaattGtgaagcacaaactccaaatg	5	11	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70800003	T	T	70800003	1	4	7	0	1	0	0	0	0	0	0	0	3981	1392	48	3		3	CSN1S1	4	70800003	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	179594	70800003	120354273	284	6508											
C4orf7	260436	broad.mit.edu	37	chr4	71099959	71099959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacatagttacaatcatagTttattttaagtttgcagatt	5	5	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71099959	C	C	71099959	1	2	7	0	1	0	0	0	0	0	0	0	2302	1740	60	5		5	C4orf7	4	71099959	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	299956	71099959	120054317	285	6509											
SMR3B	10879	broad.mit.edu	37	chr4	71255577	71255577	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaccctaaggtccaccactCcatcctgatgccccaggtta	6	17	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71255577	A	A	71255577	1	1	7	0	1	0	0	0	0	0	0	0	14926	870	30	3		3	SMR3B	4	71255577	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	155618	71255577	119898699	286	6510											
MUC7	4589	broad.mit.edu	37	chr4	71347137	71347137	+	Frame_Shift_Del	DEL	C	-	-													ctgcaactacaccagctccaCcatcttcctcagctccacca					rs144213977		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71347137	-	-	71347137	7	5	7	1	0	1	0	1	0	0	0	0	10075	507	18	0	682	0	MUC7	4	71347137	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	91560	71347137	119807139	287	6511											
IGJ	3512	broad.mit.edu	37	chr4	71532144	71532144	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttctaaatatcacatacCtttcacatgaacagccttaa	2	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71532144	G	G	71532144	3	3	7	1	0	0	0	0	1	0	0	0	7662	695	24	4	431	4	IGJ	4	71532144	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	185007	71532144	119622132	288	6512											
AFP	174	broad.mit.edu	37	chr4	74313357	74313357	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagatagagattttaaccAattttcttcaggggaaaaaa	9	4	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74313357	G	G	74313357	3	3	7	1	0	0	0	0	1	0	0	0	363	130	5	5	1052	5	AFP	4	74313357	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	2781213	74313357	116840919	289	6513											
WDFY3	23001	broad.mit.edu	37	chr4	85724621	85724621	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagaatgatatgcatgcCtataaaaaaagaaagagtaa	7	4	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85724621	A	A	85724621	5	1	7	1	0	0	0	0	0	0	1	0	17397	695	24	2	8363	2	WDFY3	4	85724621	Splice_Site	SNP	C	TCGA-05-4390-01A-02D-1753-08	11411264	85724621	105429655	290	6514											
UNC5C	8633	broad.mit.edu	37	chr4	96140382	96140382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttggtcattgggattttGtctgagacgtcatgcagggc	15	6	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96140382	T	T	96140382	3	4	7	1	0	0	0	0	1	0	0	0	17119	1368	48	3	1444	3	UNC5C	4	96140382	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	10415761	96140382	95013894	291	6515											
NHEDC1	150159	broad.mit.edu	37	chr4	103911057	103911057	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtatctgataagacagtTttagtttcttcctgtgcagt	8	7	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103911057	A	A	103911057	3	1	7	1	0	0	0	0	1	0	0	0	10495	1838	64	5	1576	5	NHEDC1	4	103911057	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	7770675	103911057	87243219	292	6516											
CENPE	1062	broad.mit.edu	37	chr4	104066135	104066135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaattaataaaacttaaCatgaacaccgtcattatcac	4	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104066135	A	A	104066135	1	1	7	0	1	0	0	0	0	0	0	0	3260	493	17	3		3	CENPE	4	104066135	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	155078	104066135	87088141	293	6517											
CENPE	1062	broad.mit.edu	37	chr4	104104108	104104108	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtttatataataaagtagTtggtttttaatgcagaactc	7	4	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104104108	A	A	104104108	1	1	7	0	1	0	0	0	0	0	0	0	3260	1740	60	5		5	CENPE	4	104104108	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	37973	104104108	87050168	294	6518											
DKK2	27123	broad.mit.edu	37	chr4	108124770	108124770	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgatgggagtgttgggacAgtggtgctccacctcaggat	16	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108124770	G	G	108124770	1	3	7	0	1	0	0	0	0	0	0	0	4585	203	7	5		5	DKK2	4	108124770	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	4020662	108124770	83029506	295	6519											
C4orf21	55345	broad.mit.edu	37	chr4	113468320	113468320	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacttactttccagacaactCcaattatacattattttaag	2	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113468320	A	A	113468320	1	1	7	0	1	0	0	0	0	0	0	0	2277	870	30	3		3	C4orf21	4	113468320	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	5343550	113468320	77685956	296	6520											
ARSJ	79642	broad.mit.edu	37	chr4	114823441	114823441	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttgtgcttatccacaagTaacacctgaatggcaagttg	8	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114823441	A	A	114823441	3	1	7	1	0	0	0	0	1	0	0	0	999	1638	57	5	14	5	ARSJ	4	114823441	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	1355121	114823441	76330835	297	6521											
UGT8	7368	broad.mit.edu	37	chr4	115597059	115597059	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attataagcatcatcattctGtgttttgtcccctctccata	4	11	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115597059	A	A	115597059	1	1	7	0	1	0	0	0	0	0	0	0	17091	1392	48	4		4	UGT8	4	115597059	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	773618	115597059	75557217	298	6522											
NDST3	9348	broad.mit.edu	37	chr4	119115454	119115454	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccgcaagtctgtaattcTgtagatgattccgccatctt	7	11	4	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119115454	C	C	119115454	1	2	7	0	1	0	0	0	0	0	0	0	10352	1595	55	5		5	NDST3	4	119115454	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	3518395	119115454	72038822	299	6523											
SEC24D	9871	broad.mit.edu	37	chr4	119686060	119686060	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtccagatgttggaaaTagaatggtggaactaataaa	12	3	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119686060	C	C	119686060	3	2	7	1	0	0	0	0	1	0	0	0	14110	1406	49	5	1961	5	SEC24D	4	119686060	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	570606	119686060	71468216	300	6524											
TNIP3	79931	broad.mit.edu	37	chr4	122075623	122075623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggacccacactgcagcCtagattttgttgcgactgtc	11	12	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122075623	A	A	122075623	1	1	7	0	1	0	0	0	0	0	0	0	16439	696	24	2		2	TNIP3	4	122075623	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2389563	122075623	69078653	301	6525											
TRPC3	7222	broad.mit.edu	37	chr4	122853835	122853835	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagggtggttgaggatgGcctctacgatgcgcacgtag	16	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122853835	A	A	122853835	3	1	7	1	0	0	0	0	1	0	0	0	16704	1203	42	4	2231	4	TRPC3	4	122853835	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	778212	122853835	68300441	302	6526											
KIAA1109	84162	broad.mit.edu	37	chr4	123140465	123140465	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttacatacctcttttgaCagcaatttgtgttttcttaa	4	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123140465	T	T	123140465	1	4	7	0	1	0	0	0	0	0	0	0	8278	493	17	4		4	KIAA1109	4	123140465	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	286630	123140465	68013811	303	6527											
FAT4	79633	broad.mit.edu	37	chr4	126240058	126240058	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacatcagttatctcattaCtactggggatcagaaaggta	8	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126240058	G	G	126240058	3	3	7	1	0	0	0	0	1	0	0	0	5749	565	20	4	2494	4	FAT4	4	126240058	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3099593	126240058	64914218	304	6528											
FAT4	79633	broad.mit.edu	37	chr4	126242180	126242181	+	Frame_Shift_Ins	INS	-	CCATCAG	CCATCAG													aaaacgcccttgctgcagacINSccatcagctgtgattggttc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CCATCAG	126242181	CCATCAG	CCATCAG	126242180	7	5	7	1	0	1	1	0	0	0	0	0	5749	506	18	0	4616	0	FAT4	4	126242180	Frame_Shift_Ins	INS	-	TCGA-05-4390-01A-02D-1753-08	2122	126242180	64912096	305	6529											
LARP1B	55132	broad.mit.edu	37	chr4	129012285	129012285	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggggaagaggacgaggcaGaggaaatcctcgatgtatga	16	6	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129012285	T	T	129012285	3	4	7	1	0	0	0	0	1	0	0	0	8701	942	33	3	502	3	LARP1B	4	129012285	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2770105	129012285	62141991	306	6530											
C4orf33	132321	broad.mit.edu	37	chr4	130024030	130024030	+	Intron	DEL	G	-	-													tattattttatcttgctgttGggaagtaagtgcttctgagc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130024030	-	-	130024030	6	5	7	0	1	1	0	1	0	0	0	0	2286	1363	47	0		0	C4orf33	4	130024030	Intron	DEL	G	TCGA-05-4390-01A-02D-1753-08	1011745	130024030	61130246	307	6531											
NDUFC1	4717	broad.mit.edu	37	chr4	140213593	140213593	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaatgtataaacctaataCaaaacaaacaacaagcttgt	3	7	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140213593	G	G	140213593	1	3	7	0	1	0	0	0	0	0	0	0	10384	493	17	4		4	NDUFC1	4	140213593	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	10189563	140213593	50940683	308	6532											
IL15	3600	broad.mit.edu	37	chr4	142640615	142640615	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatttaccgtggctttgaGtaatgagaatttcggtaaga	12	4	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142640615	T	T	142640615	1	4	7	0	1	0	0	0	0	0	0	0	7701	1044	36	3		3	IL15	4	142640615	5'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	2427022	142640615	48513661	309	6533											
GAB1	2549	broad.mit.edu	37	chr4	144359508	144359508	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaacacctggtaatacttAtcagattccacgaacatttc	4	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144359508	G	G	144359508	3	3	7	1	0	0	0	0	1	0	0	0	6208	449	16	5	964	5	GAB1	4	144359508	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1718893	144359508	46794768	310	6534											
GYPA	2993	broad.mit.edu	37	chr4	145032616	145032616	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaaatatgagacatagttaTgtttaaacacaacaggaaat	7	5	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145032616	A	A	145032616	1	1	7	0	1	0	0	0	0	0	0	0	6973	1479	51	5		5	GYPA	4	145032616	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	673108	145032616	46121660	311	6535											
PRMT10	90826	broad.mit.edu	37	chr4	148589703	148589703	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttacctatgatgtcttcTtatctctgcacattctactg	4	12	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148589703	C	C	148589703	3	2	7	1	0	0	0	0	1	0	0	0	12642	1617	56	5	1625	5	PRMT10	4	148589703	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	3557087	148589703	42564573	312	6536											
LRBA	987	broad.mit.edu	37	chr4	151411967	151411967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactagaacagaaggtgggCtacaaataactatctaaatt	7	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151411967	A	A	151411967	1	1	7	0	1	0	0	0	0	0	0	0	9018	812	28	3		3	LRBA	4	151411967	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2822264	151411967	39742309	313	6537											
KIAA0922	23240	broad.mit.edu	37	chr4	154548817	154548817	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagccttcctgccgggccCacaggtgttgaagaagataa	11	13	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154548817	T	T	154548817	2	4	7	1	0	0	0	0	0	0	0	1	8271	581	21	4		4	KIAA0922	4	154548817	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	3136850	154548817	36605459	314	6538											
TMEM144	55314	broad.mit.edu	37	chr4	159174649	159174649	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcatcatcttgactggAgccttatgcactgctttttc	7	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159174649	G	G	159174649	2	3	7	1	0	0	0	0	0	0	0	1	16181	291	11	5		5	TMEM144	4	159174649	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	4625832	159174649	31979627	315	6539											
RXFP1	59350	broad.mit.edu	37	chr4	159493819	159493819	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctttgtattaaccaccttCaaactttgtgtcttctcccc	4	14	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159493819	A	A	159493819	1	1	7	0	1	0	0	0	0	0	0	0	13870	841	29	3		3	RXFP1	4	159493819	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	319170	159493819	31660457	316	6540											
RXFP1	59350	broad.mit.edu	37	chr4	159566140	159566140	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acactgatggaatttcatctCtagagaatctcttggcaagc	8	9	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159566140	A	A	159566140	3	1	7	1	0	0	0	0	1	0	0	0	13870	912	32	3	1253	3	RXFP1	4	159566140	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	72321	159566140	31588136	317	6541											
C4orf45	152940	broad.mit.edu	37	chr4	159928756	159928756	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagctttccagacaacCatttccaagtacttctcaga	7	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159928756	T	T	159928756	1	4	7	0	1	0	0	0	0	0	0	0	2296	609	21	4		4	C4orf45	4	159928756	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	362616	159928756	31225520	318	6542											
FSTL5	56884	broad.mit.edu	37	chr4	162380415	162380415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcttagcacccagacCtgatcatgtgatttgtcata	7	13	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162380415	A	A	162380415	3	1	7	1	0	0	0	0	1	0	0	0	6140	680	24	2	890	2	FSTL5	4	162380415	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2451659	162380415	28773861	319	6543											
C4orf43	55319	broad.mit.edu	37	chr4	164435356	164435356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggtcagaaaagggaattGtccagcctggttctttaaga	12	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164435356	T	T	164435356	1	4	7	0	1	0	0	0	0	0	0	0	2294	1392	48	3		3	C4orf43	4	164435356	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2054941	164435356	26718920	320	6544											
ANP32C	23520	broad.mit.edu	37	chr4	165118707	165118707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgagattgaggtgaggcCtccgttgattttacttaaga	12	6	1	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118707	A	A	165118707	3	1	7	1	0	0	0	0	1	0	0	0	707	681	24	2	550	2	ANP32C	4	165118707	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	683351	165118707	26035569	321	6545											
CPE	1363	broad.mit.edu	37	chr4	166326330	166326330	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtcctcagcctaacccAgtgagtgtggcatctttaag	10	11	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166326330	G	G	166326330	1	3	7	0	1	0	0	0	0	0	0	0	3831	203	7	5		5	CPE	4	166326330	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1207623	166326330	24827946	322	6546											
ANXA10	11199	broad.mit.edu	37	chr4	169105768	169105768	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgccagaagtgaaatagAcctgctgaccataaggaaac	9	9	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169105768	T	T	169105768	3	4	7	1	0	0	0	0	1	0	0	0	715	275	10	5	884	5	ANXA10	4	169105768	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	2779438	169105768	22048508	323	6547											
DDX60L	91351	broad.mit.edu	37	chr4	169353735	169353735	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatcactgtaaaaataaaTacataatttttttaaatttt	1	4	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169353735	G	G	169353735	1	3	7	0	1	0	0	0	0	0	0	0	4412	1421	49	5		5	DDX60L	4	169353735	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	247967	169353735	21800541	324	6548											
PALLD	23022	broad.mit.edu	37	chr4	169632955	169632955	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacgaacggagtccatccCagccgtggagtaaatggact	12	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169632955	T	T	169632955	2	4	7	1	0	0	0	0	0	0	0	1	11501	581	21	4		4	PALLD	4	169632955	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	279220	169632955	21521321	325	6549											
CLCN3	1182	broad.mit.edu	37	chr4	170557250	170557250	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcagttggtaagttcagCatgacagcctaatgtttgta	10	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170557250	G	G	170557250	1	3	7	0	1	0	0	0	0	0	0	0	3495	725	25	4		4	CLCN3	4	170557250	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	924295	170557250	20597026	326	6550											
NEIL3	55247	broad.mit.edu	37	chr4	178274885	178274885	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctggatattctaacaggtAtgatgcttttaaccttggtc	8	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178274885	C	C	178274885	1	2	7	0	1	0	0	0	0	0	0	0	10415	464	16	5		5	NEIL3	4	178274885	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	7717635	178274885	12879391	327	6551											
WWC2	80014	broad.mit.edu	37	chr4	184114711	184114711	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttgacatatgcggtttgAcggaaagaatcactggtgtg	12	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184114711	T	T	184114711	1	4	7	0	1	0	0	0	0	0	0	0	17539	290	10	5		5	WWC2	4	184114711	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	5839826	184114711	7039565	328	6552											
FRG1	2483	broad.mit.edu	37	chr4	190878613	190878613	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcaatgaagcaggggacAtagaagcaaaaagtaaaaca	11	5	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190878613	G	G	190878613	3	3	7	1	0	0	0	0	1	0	0	0	6106	217	8	5	515	5	FRG1	4	190878613	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	6763902	190878613	275663	329	6553											
NSUN2	54888	broad.mit.edu	37	chr5	6609900	6609900	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttgtcttaaatgtacaaGatcaaatgttatgtcatttt	5	4	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6609900	C	C	6609900	1	2	7	0	1	0	0	0	0	0	0	0	10773	957	33	4		4	NSUN2	5	6609900	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08		6609900	174305360	330	6554											
FBXL7	23194	broad.mit.edu	37	chr5	15928457	15928457	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccgtaactgtcagtggcTgcaggcggctcacagaccga	12	12	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928457	A	A	15928457	3	1	7	1	0	0	0	0	1	0	0	0	5781	1580	55	5	596	5	FBXL7	5	15928457	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	9318557	15928457	164986803	331	6555											
CDH9	1007	broad.mit.edu	37	chr5	26881466	26881466	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttcttttaatcttcgatGgataaaatcttgtacatcaa	5	6	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881466	A	A	26881466	3	1	7	1	0	0	0	0	1	0	0	0	3147	1348	47	4	224	4	CDH9	5	26881466	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	10953009	26881466	154033794	332	6556											
SLC45A2	51151	broad.mit.edu	37	chr5	33947361	33947361	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaacaggctgcacaggacCagggtggagtagacattcgg	14	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33947361	A	A	33947361	2	1	7	1	0	0	0	0	0	0	0	1	14755	581	21	2		2	SLC45A2	5	33947361	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	7065895	33947361	146967899	333	6557											
UGT3A2	167127	broad.mit.edu	37	chr5	36038112	36038112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaaacagacggatgcttGggtgagctgttgtaaataag	13	5	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36038112	T	T	36038112	3	4	7	1	0	0	0	0	1	0	0	0	17090	1348	47	2	497	2	UGT3A2	5	36038112	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2090751	36038112	144877148	334	6558											
HEATR7B2	133558	broad.mit.edu	37	chr5	41019043	41019043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagattttccagaggtGgaaggggcagcagcctccga	13	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41019043	T	T	41019043	3	4	7	1	0	0	0	0	1	0	0	0	7102	1348	47	2	2310	2	HEATR7B2	5	41019043	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4980931	41019043	139896217	335	6559											
PDE4D	5144	broad.mit.edu	37	chr5	59726227	59726227	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccagccccttggccttgcTtctttccctgagggcctcga	9	17	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59726227	G	G	59726227	1	3	7	0	1	0	0	0	0	0	0	0	11736	1624	56	5		5	PDE4D	5	59726227	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	18707184	59726227	121189033	336	6560											
ERBB2IP	55914	broad.mit.edu	37	chr5	65346652	65346652	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttatcagatgaagttacaCacaatagcaatcagaataac	5	8	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65346652	T	T	65346652	3	4	7	1	0	0	0	0	1	0	0	0	5249	478	17	4	2015	4	ERBB2IP	5	65346652	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	5620425	65346652	115568608	337	6561											
MAST4	375449	broad.mit.edu	37	chr5	66255082	66255082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatataacaaccatgaaaGcccagcgggaaaggctacag	9	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66255082	T	T	66255082	1	4	7	0	1	0	0	0	0	0	0	0	9419	986	34	3		3	MAST4	5	66255082	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	908430	66255082	114660178	338	6562											
FAM169A	26049	broad.mit.edu	37	chr5	74130289	74130289	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacccaatggcctctcctTtcttccacagaatcttagca	4	14	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74130289	G	G	74130289	3	3	7	1	0	0	0	0	1	0	0	0	5532	1841	64	5	1596	5	FAM169A	5	74130289	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	7875207	74130289	106784971	339	6563											
SLCO6A1	133482	broad.mit.edu	37	chr5	101834447	101834447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcggggttcccttggcCctcctgtccttagcaggctg	12	14	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101834447	A	A	101834447	3	1	7	1	0	0	0	0	1	0	0	0	14846	622	22	2	2109	2	SLCO6A1	5	101834447	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	27704158	101834447	79080813	340	6564											
NUDT12	83594	broad.mit.edu	37	chr5	102895744	102895744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacagcctaaaatgtttacCctttctcaagcagaaattgg	7	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102895744	A	A	102895744	3	1	7	1	0	0	0	0	1	0	0	0	10823	637	22	2	1206	2	NUDT12	5	102895744	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1061297	102895744	78019516	341	6565											
WDR36	134430	broad.mit.edu	37	chr5	110439831	110439831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattcttgtttattttggGggatctagaagtatttttct	9	3	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110439831	T	T	110439831	1	4	7	0	1	0	0	0	0	0	0	0	17417	1247	43	2		2	WDR36	5	110439831	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	7544087	110439831	70475429	342	6566											
FBN2	2201	broad.mit.edu	37	chr5	127666358	127666358	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcattgatgctacactGgtgggttccattagaacatt	10	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127666358	A	A	127666358	4	1	7	1	0	0	0	0	0	1	0	0	5760	1357	47	4	4618	4	FBN2	5	127666358	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	17226527	127666358	53248902	343	6567											
FBN2	2201	broad.mit.edu	37	chr5	127681204	127681204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcagcaggcatccatgCggaactttccaggaacgggg	13	12	0	0	rs139620380	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127681204	A	A	127681204	3	1	7	1	0	0	0	0	1	0	0	0	5760	768	27	3	5844	3	FBN2	5	127681204	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	14846	127681204	53234056	344	6568											
ISOC1	51015	broad.mit.edu	37	chr5	128440707	128440707	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttttctgctgtgatatgcAggaaaggttcagaccagcca	11	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128440707	T	T	128440707	3	4	7	1	0	0	0	0	1	0	0	0	7932	188	7	5	374	5	ISOC1	5	128440707	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	759503	128440707	52474553	345	6569											
RAPGEF6	51735	broad.mit.edu	37	chr5	130799906	130799906	+	Frame_Shift_Del	DEL	C	-	-													tacttctttagctgtggtgtCtttactgatgataatgtagc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130799906	-	-	130799906	7	5	7	1	0	1	0	1	0	0	0	0	13156	913	32	0	3008	0	RAPGEF6	5	130799906	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	2359199	130799906	50115354	346	6570											
PCDHB7	56129	broad.mit.edu	37	chr5	140552337	140552337	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctattattcagctcatttCaaaggattccgctgctgcca	7	11	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140552337	A	A	140552337	1	1	7	0	1	0	0	0	0	0	0	0	11641	841	29	3		3	PCDHB7	5	140552337	5'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	9752431	140552337	40362923	347	6571											
PCDHGB3	56102	broad.mit.edu	37	chr5	140752309	140752309	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accacaagatcttctatgtgAtgaagcctcttggtttgaaa	8	8	3	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140752309	C	C	140752309	3	2	7	1	0	0	0	0	1	0	0	0	11658	333	12	5	2350	5	PCDHGB3	5	140752309	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	199972	140752309	40162951	348	6572											
PCDHGA7	56108	broad.mit.edu	37	chr5	140762984	140762984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccagagttaccagctcaGccccaatcgccacttctccc	5	20	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140762984	T	T	140762984	3	4	7	1	0	0	0	0	1	0	0	0	11653	971	34	3	520	3	PCDHGA7	5	140762984	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	10675	140762984	40152276	349	6573											
PCDHGB7	56099	broad.mit.edu	37	chr5	140798154	140798154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaaccccccagtgttcaGccaggacgtgtacagggtta	11	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140798154	T	T	140798154	3	4	7	1	0	0	0	0	1	0	0	0	11662	971	34	3	730	3	PCDHGB7	5	140798154	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	35170	140798154	40117106	350	6574											
PCDHGC5	56097	broad.mit.edu	37	chr5	140874355	140874355	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacgggtactcagcccctttCcctctgttttctccacagca	6	17	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140874355	A	A	140874355	1	1	7	0	1	0	0	0	0	0	0	0	11665	870	30	3		3	PCDHGC5	5	140874355	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	76201	140874355	40040905	351	6575											
STK32A	202374	broad.mit.edu	37	chr5	146752642	146752642	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctattttccttcagtcctAcagttgaaagcatttagagg	8	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146752642	G	G	146752642	1	3	7	0	1	0	0	0	0	0	0	0	15415	406	14	5		5	STK32A	5	146752642	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	5878287	146752642	34162618	352	6576											
PDGFRB	5159	broad.mit.edu	37	chr5	149515331	149515331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacccgagcaggtcagaaCgaaggtgctggagacattga	14	8	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149515331	A	A	149515331	3	1	7	1	0	0	0	0	1	0	0	0	11756	536	19	3	3253	3	PDGFRB	5	149515331	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2762689	149515331	31399929	353	6577											
GLRA1	2741	broad.mit.edu	37	chr5	151231087	151231087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggatgacaatgagcaggCtgggaatatacatctgaatc	12	6	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151231087	A	A	151231087	3	1	7	1	0	0	0	0	1	0	0	0	6518	797	28	3	609	3	GLRA1	5	151231087	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1715756	151231087	29684173	354	6578											
NMUR2	56923	broad.mit.edu	37	chr5	151783845	151783845	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattctattttccctctgttCccttccatttctgaatttcc	2	14	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151783845	A	A	151783845	1	1	7	0	1	0	0	0	0	0	0	0	10602	870	30	3		3	NMUR2	5	151783845	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	552758	151783845	29131415	355	6579											
KIF4B	285643	broad.mit.edu	37	chr5	154395645	154395645	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaggtattgcagctcgAgtgaggaattggcttggaaa	15	4	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154395645	T	T	154395645	2	4	7	1	0	0	0	0	0	0	0	1	8374	291	11	5		5	KIF4B	5	154395645	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	2611800	154395645	26519615	356	6580											
FAM71B	153745	broad.mit.edu	37	chr5	156589909	156589909	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgattcttgtcccccgctCtcctgcggtgactttcacct	7	16	4	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156589909	A	A	156589909	3	1	7	1	0	0	0	0	1	0	0	0	5659	913	32	3	454	3	FAM71B	5	156589909	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2194264	156589909	24325351	357	6581											
ADAM19	8728	broad.mit.edu	37	chr5	156918640	156918640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctcagggggcataggcCcactgtcgatactgcccccg	11	16	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156918640	A	A	156918640	3	1	7	1	0	0	0	0	1	0	0	0	240	623	22	2	702	2	ADAM19	5	156918640	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	328731	156918640	23996620	358	6582											
ATP10B	23120	broad.mit.edu	37	chr5	160047239	160047239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtaggtctgtattccaGttgggacctgccataccagg	11	10	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160047239	T	T	160047239	1	4	7	0	1	0	0	0	0	0	0	0	1121	1044	36	3		3	ATP10B	5	160047239	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3128599	160047239	20868021	359	6583											
ATP10B	23120	broad.mit.edu	37	chr5	160047932	160047932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccagggacgtccccagaGccttgcttgagggtttgatg	13	11	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160047932	T	T	160047932	3	4	7	1	0	0	0	0	1	0	0	0	1121	971	34	3	2595	3	ATP10B	5	160047932	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	693	160047932	20867328	360	6584											
RARS	5917	broad.mit.edu	37	chr5	167933892	167933892	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgatcccaagaggctactTttcatttgataccatattag	6	9	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167933892	A	A	167933892	1	1	7	0	1	0	0	0	0	0	0	0	13166	1856	64	5		5	RARS	5	167933892	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	7885960	167933892	12981368	361	6585											
CCDC99	54908	broad.mit.edu	37	chr5	169015591	169015591	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgactgaggtaggactctgGactcctctgtctgcaagagt	12	9	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169015591	T	T	169015591	1	4	7	0	1	0	0	0	0	0	0	0	2904	1189	41	3		3	CCDC99	5	169015591	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1081699	169015591	11899669	362	6586											
DOCK2	1794	broad.mit.edu	37	chr5	169267762	169267762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctgactgttttacaggCcttcacctaccaccatatcc	5	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169267762	A	A	169267762	3	1	7	1	0	0	0	0	1	0	0	0	4727	753	26	3	2811	3	DOCK2	5	169267762	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	252171	169267762	11647498	363	6587											
DOCK2	1794	broad.mit.edu	37	chr5	169469016	169469016	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtgtcttctcttcacaGtggtcggatgagcagtgtgc	12	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169469016	A	A	169469016	5	1	7	1	0	0	0	0	0	0	1	0	4727	1043	36	4	3906	4	DOCK2	5	169469016	Splice_Site	SNP	G	TCGA-05-4390-01A-02D-1753-08	201254	169469016	11446244	364	6588											
DOCK2	1794	broad.mit.edu	37	chr5	169474591	169474591	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttgctgttggatactaCggccagggattcccctcctt	9	12	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169474591	A	A	169474591	4	1	7	1	0	0	0	0	0	1	0	0	4727	547	19	3	4202	3	DOCK2	5	169474591	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	5575	169474591	11440669	365	6589											
GABRP	2568	broad.mit.edu	37	chr5	170216248	170216248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttctcaggcccaattttGgtggtaggtcatcctctgtg	10	9	3	0	rs146765294	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170216248	T	T	170216248	3	4	7	1	0	0	0	0	1	0	0	0	6234	1348	47	2	175	2	GABRP	5	170216248	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	741657	170216248	10699012	366	6590											
DRD1	1812	broad.mit.edu	37	chr5	174869090	174869090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagggttgaaaatgccttcCgaaaatcagcattaaaggca	10	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174869090	T	T	174869090	3	4	7	1	0	0	0	0	1	0	0	0	4796	652	23	4	331	4	DRD1	5	174869090	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	4652842	174869090	6046170	367	6591											
CDHR2	54825	broad.mit.edu	37	chr5	176017225	176017225	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgctgggtgatccaggctCctgactcttcaactctgtcc	9	15	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176017225	T	T	176017225	1	4	7	0	1	0	0	0	0	0	0	0	3149	870	30	4		4	CDHR2	5	176017225	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1148135	176017225	4898035	368	6592											
TSPAN17	26262	broad.mit.edu	37	chr5	176084785	176084785	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcggtggcaacactacctggGacactgcctccccagtcacc	9	17	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176084785	A	A	176084785	1	1	7	0	1	0	0	0	0	0	0	0	16766	1189	41	4		4	TSPAN17	5	176084785	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	67560	176084785	4830475	369	6593											
ZNF454	285676	broad.mit.edu	37	chr5	178391974	178391974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaagtcttctctaagaGttcaactcttaataaacatc	5	8	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178391974	T	T	178391974	3	4	7	1	0	0	0	0	1	0	0	0	18050	1029	36	3	583	3	ZNF454	5	178391974	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2307189	178391974	2523286	370	6594											
ADAMTS2	9509	broad.mit.edu	37	chr5	178555076	178555076	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagtcctcatggatcatgTatttgtacgtcagtgagacc	11	8	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178555076	A	A	178555076	3	1	7	1	0	0	0	0	1	0	0	0	265	1638	57	5	1158	5	ADAMTS2	5	178555076	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	163102	178555076	2360184	371	6595											
GFPT2	9945	broad.mit.edu	37	chr5	179752007	179752007	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccctttcccagtggtggaGgatcctgtttaggtcccaca	11	12	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179752007	A	A	179752007	1	1	7	0	1	0	0	0	0	0	0	0	6410	1015	35	4		4	GFPT2	5	179752007	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1196931	179752007	1163253	372	6596											
RIPK1	8737	broad.mit.edu	37	chr6	3105766	3105766	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccagggacttgggatgggtCctgtggaggagtcctggttt	17	8	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3105766	G	G	3105766	3	3	7	1	0	0	0	0	1	0	0	0	13491	855	30	4	1087	4	RIPK1	6	3105766	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08		3105766	168009301	373	6597											
CDKAL1	54901	broad.mit.edu	37	chr6	20722602	20722602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttcttttctcctcccGgttcaaaatgcttgcttctc	4	14	5	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20722602	T	T	20722602	1	4	7	0	1	0	0	0	0	0	0	0	3182	1131	39	1		1	CDKAL1	6	20722602	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	17616836	20722602	150392465	374	6598											
SLC17A1	6568	broad.mit.edu	37	chr6	25813478	25813478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttagaattggaagtctctGtttgtagtggatctctttcc	10	6	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25813478	T	T	25813478	1	4	7	0	1	0	0	0	0	0	0	0	14529	1392	48	3		3	SLC17A1	6	25813478	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	5090876	25813478	145301589	375	6599											
BTN2A1	11120	broad.mit.edu	37	chr6	26468137	26468137	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accacacaatccccagggttCctgagaccccaggcctaaac	7	17	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26468137	T	T	26468137	1	4	7	0	1	0	0	0	0	0	0	0	1570	870	30	4		4	BTN2A1	6	26468137	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	654659	26468137	144646930	376	6600											
OR2W1	26692	broad.mit.edu	37	chr6	29012657	29012657	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgtaaacatagagttggAtgatacaacccacatagctg	8	8	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29012657	G	G	29012657	3	3	7	1	0	0	0	0	1	0	0	0	11126	333	12	5	670	5	OR2W1	6	29012657	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	2544520	29012657	142102410	377	6601											
OR2B3	442184	broad.mit.edu	37	chr6	29054921	29054921	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaaatatggtgattgtGtatgatattaacaggaccac	9	6	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29054921	A	A	29054921	2	1	7	1	0	0	0	0	0	0	0	1	11084	1372	48	4		4	OR2B3	6	29054921	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	42264	29054921	142060146	378	6602											
GABBR1	2550	broad.mit.edu	37	chr6	29574341	29574342	+	Intron	INS	-	A	A													cttctcagtctctggcttccINSaactgttttcctatgagacc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29574342	A	A	29574341	6	5	7	0	1	1	1	0	0	0	0	0	6215	609	21	0		0	GABBR1	6	29574341	Intron	INS	-	TCGA-05-4390-01A-02D-1753-08	519420	29574341	141540726	379	6603											
TNXB	7148	broad.mit.edu	37	chr6	32011608	32011608	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctcatagcgagcgcctggGatcagcccctggagtttctg	12	13	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32011608	A	A	32011608	2	1	7	1	0	0	0	0	0	0	0	1	16469	1164	41	4		4	TNXB	6	32011608	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	2437267	32011608	139103459	380	6604											
TNXB	7148	broad.mit.edu	37	chr6	32024666	32024666	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggcactgcttgggtggTctcggcttcatcctctggag	15	10	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32024666	A	A	32024666	3	1	7	1	0	0	0	0	1	0	0	0	16469	1667	58	5	6961	5	TNXB	6	32024666	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	13058	32024666	139090401	381	6605											
ATF6B	1388	broad.mit.edu	37	chr6	32087558	32087558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcaagacttccctcttcCcttcccatcactcgccctac	4	19	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32087558	A	A	32087558	1	1	7	0	1	0	0	0	0	0	0	0	1089	638	22	2		2	ATF6B	6	32087558	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	62892	32087558	139027509	382	6606											
TAP2	6891	broad.mit.edu	37	chr6	32797760	32797760	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcatctgcgtgggcagccTgggcagccgccatcacctta	12	14	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32797760	A	A	32797760	3	1	7	1	0	0	0	0	1	0	0	0	15670	1580	55	5	415	5	TAP2	6	32797760	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	710202	32797760	138317307	383	6607											
RXRB	6257	broad.mit.edu	37	chr6	33163824	33163824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatttggctgcaggggaCgggggtaagagttatggaag	19	4	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33163824	A	A	33163824	1	1	7	0	1	0	0	0	0	0	0	0	13875	551	19	3		3	RXRB	6	33163824	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	366064	33163824	137951243	384	6608											
TREM1	54210	broad.mit.edu	37	chr6	41250567	41250567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaaaggagaggagcccCctgtttttcttgtccaacca	11	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41250567	A	A	41250567	1	1	7	0	1	0	0	0	0	0	0	0	16594	638	22	2		2	TREM1	6	41250567	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	8086743	41250567	129864500	385	6609											
YIPF3	25844	broad.mit.edu	37	chr6	43484785	43484786	+	5'Flank	DNP	CG	TT	TT													gcggtgcgttgccacggagaCggagcagggctactaggacg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43484786	TT	TT	43484785	1	4	7	0	1	0	0	0	0	0	0	0	17606	551	19	4		4	YIPF3	6	43484785	5'Flank	DNP	CG	TCGA-05-4390-01A-02D-1753-08	2234218	43484785	127630282	386	6610											
RHAG	6005	broad.mit.edu	37	chr6	49578635	49578635	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctccagtaaagacaatacAaaccatggccagaacagcta	8	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49578635	G	G	49578635	1	3	7	0	1	0	0	0	0	0	0	0	13424	145	5	5		5	RHAG	6	49578635	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	6093850	49578635	121536432	387	6611											
CRISP1	167	broad.mit.edu	37	chr6	49806062	49806063	+	Intron	DNP	GC	TT	TT													gatgaaagttgtagaaaagtGcgatgttttttaatgcttaa							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	49806063	TT	TT	49806062	1	4	7	0	1	0	0	0	0	0	0	0	3911	1334	46	3		3	CRISP1	6	49806062	Intron	DNP	GC	TCGA-05-4390-01A-02D-1753-08	227427	49806062	121309005	388	6612											
COL19A1	1310	broad.mit.edu	37	chr6	70647991	70647991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagggcataaaggagagcCggtaagaaaaaaacaaatac	11	5	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70647991	A	A	70647991	3	1	7	1	0	0	0	0	1	0	0	0	3708	666	23	1	965	1	COL19A1	6	70647991	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	20841929	70647991	100467076	389	6613											
RIPPLY2	134701	broad.mit.edu	37	chr6	84563492	84563492	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaccacgccgcggaggcGgtgagtgagccacgcgtctc	15	15	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84563492	T	T	84563492	2	4	7	1	0	0	0	0	0	0	0	1	13496	1130	39	1		1	RIPPLY2	6	84563492	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	13915501	84563492	86551575	390	6614											
RIPPLY2	134701	broad.mit.edu	37	chr6	84563752	84563752	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgaggaacactgggtcGtgcacgtttccactttctag	12	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84563752	T	T	84563752	1	4	7	0	1	0	0	0	0	0	0	0	13496	1160	40	3		3	RIPPLY2	6	84563752	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	260	84563752	86551315	391	6615											
TBX18	9096	broad.mit.edu	37	chr6	85446500	85446500	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacccccactgctaagcaggTgcactccttccacagggggc	11	16	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85446500	A	A	85446500	3	1	7	1	0	0	0	0	1	0	0	0	15775	1696	59	5	100	5	TBX18	6	85446500	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	882748	85446500	85668567	392	6616											
MDN1	23195	broad.mit.edu	37	chr6	90468063	90468063	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaagtcaggatgccgaacCagtggctctgttaagagaaa	13	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90468063	A	A	90468063	2	1	7	1	0	0	0	0	0	0	0	1	9508	581	21	2		2	MDN1	6	90468063	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	5021563	90468063	80647004	393	6617											
GRIK2	2898	broad.mit.edu	37	chr6	102074407	102074407	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagacaacaaagattccttcTatgtcagtctctacccagac	5	13	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102074407	A	A	102074407	3	1	7	1	0	0	0	0	1	0	0	0	6840	1522	53	5	446	5	GRIK2	6	102074407	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	11606344	102074407	69040660	394	6618											
AIM1	202	broad.mit.edu	37	chr6	106987153	106987153	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctaacacctgagtccaacCattcattatgtaggtccgta	6	11	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106987153	T	T	106987153	1	4	7	0	1	0	0	0	0	0	0	0	430	609	21	4		4	AIM1	6	106987153	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4912746	106987153	64127914	395	6619											
SCML4	256380	broad.mit.edu	37	chr6	108070755	108070755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcatcctgtctgctgcCtagctagcacactaaatcgc	8	14	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108070755	A	A	108070755	1	1	7	0	1	0	0	0	0	0	0	0	14024	696	24	2		2	SCML4	6	108070755	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1083602	108070755	63044312	396	6620											
SLC22A16	85413	broad.mit.edu	37	chr6	110764010	110764011	+	Intron	DNP	AG	TT	TT													ataatagggatttatattcaAggtcacatttataactattg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	110764011	TT	TT	110764010	1	4	7	0	1	0	0	0	0	0	0	0	14560	87	3	5		5	SLC22A16	6	110764010	Intron	DNP	AG	TCGA-05-4390-01A-02D-1753-08	2693255	110764010	60351057	397	6621											
ROS1	6098	broad.mit.edu	37	chr6	117622401	117622402	+	Intron	DNP	CC	AG	AG													ggaaagaatctgagttattgCcagttttccttaattaatat					rs118136866	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	117622402	AG	AG	117622401	1	1	7	0	1	0	0	0	0	0	0	0	13642	754	26	3		3	ROS1	6	117622401	Intron	DNP	CC	TCGA-05-4390-01A-02D-1753-08	6858391	117622401	53492666	398	6622											
GOPC	57120	broad.mit.edu	37	chr6	117753608	117753608	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtcagctgctttaataTactaaatgcactgtagctct	6	9	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117753608	C	C	117753608	1	2	7	0	1	0	0	0	0	0	0	0	6637	1421	49	5		5	GOPC	6	117753608	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	131207	117753608	53361459	399	6623											
LAMA2	3908	broad.mit.edu	37	chr6	129649594	129649594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgaacaaggtccatgtGctcattcctctttacacatg	6	12	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129649594	T	T	129649594	1	4	7	0	1	0	0	0	0	0	0	0	8678	1334	46	3		3	LAMA2	6	129649594	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	11895986	129649594	41465473	400	6624											
LAMA2	3908	broad.mit.edu	37	chr6	129835715	129835715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcagctgacacaaatgaCcctgtgtttgttggaggctt	10	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129835715	A	A	129835715	3	1	7	1	0	0	0	0	1	0	0	0	8678	506	18	3	9440	3	LAMA2	6	129835715	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	186121	129835715	41279352	401	6625											
TMEM200A	114801	broad.mit.edu	37	chr6	130761637	130761637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagactctgccagatcacagCagcatgtcaacctcagcccg	8	15	4	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130761637	A	A	130761637	3	1	7	1	0	0	0	0	1	0	0	0	16246	711	25	3	72	3	TMEM200A	6	130761637	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	925922	130761637	40353430	402	6626											
ENPP1	5167	broad.mit.edu	37	chr6	132148858	132148858	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcaaagatggctgtggcCtcttgcccctccttcttgtc	8	13	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132148858	T	T	132148858	1	4	7	0	1	0	0	0	0	0	0	0	5171	696	24	4		4	ENPP1	6	132148858	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1387221	132148858	38966209	403	6627											
HBS1L	10767	broad.mit.edu	37	chr6	135318512	135318512	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggcatggctggctgacgaTccagagggacaaagagcatt	14	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135318512	A	A	135318512	1	1	7	0	1	0	0	0	0	0	0	0	7053	1450	50	5		5	HBS1L	6	135318512	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	3169654	135318512	35796555	404	6628											
SLC35D3	340146	broad.mit.edu	37	chr6	137245704	137245704	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggagtcccgctggtggCtgggagctctgaagaaggga	18	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137245704	T	T	137245704	3	4	7	1	0	0	0	0	1	0	0	0	14697	797	28	4	1127	4	SLC35D3	6	137245704	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1927192	137245704	33869363	405	6629											
IL22RA2	116379	broad.mit.edu	37	chr6	137479601	137479602	+	Frame_Shift_Ins	INS	-	C	C													cctctgaggcttcagagactINScatgcgttgactgagttcct							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137479602	C	C	137479601	7	5	7	1	0	1	1	0	0	0	0	0	7744	1551	54	0	731	0	IL22RA2	6	137479601	Frame_Shift_Ins	INS	-	TCGA-05-4390-01A-02D-1753-08	233897	137479601	33635466	406	6630											
GPR126	57211	broad.mit.edu	37	chr6	142725021	142725021	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atattacaactcggaacttgGctctcagcgtatcatccctg	7	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142725021	C	C	142725021	3	2	7	1	0	0	0	0	1	0	0	0	6705	1203	42	4	2092	4	GPR126	6	142725021	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	5245420	142725021	28390046	407	6631											
UTRN	7402	broad.mit.edu	37	chr6	144744614	144744614	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcttcacttctgtgtgtatCtcagtgctagtgttagtcag	10	8	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144744614	G	G	144744614	1	3	7	0	1	0	0	0	0	0	0	0	17230	928	32	4		4	UTRN	6	144744614	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2019593	144744614	26370453	408	6632											
SHPRH	257218	broad.mit.edu	37	chr6	146262953	146262953	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataggtaatgataactatatCctgttctgccaaaaaatgag	7	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146262953	G	G	146262953	3	3	7	1	0	0	0	0	1	0	0	0	14404	855	30	4	2883	4	SHPRH	6	146262953	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1518339	146262953	24852114	409	6633											
IYD	389434	broad.mit.edu	37	chr6	150690185	150690185	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatgtatttcctgactccCatcttggtagccattctctg	6	13	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150690185	T	T	150690185	2	4	7	1	0	0	0	0	0	0	0	1	8002	581	21	4		4	IYD	6	150690185	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	4427232	150690185	20424882	410	6634											
PARK2	5071	broad.mit.edu	37	chr6	161771171	161771171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccatgcagacgcggttcCactcgcagccacagttccag	9	18	0	1	rs137853056		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161771171	A	A	161771171	3	1	7	1	0	0	0	0	1	0	0	0	11543	595	21	2	43	2	PARK2	6	161771171	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	11080986	161771171	9343896	411	6635											
C6orf118	168090	broad.mit.edu	37	chr6	165715541	165715541	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctcccacctcagaggcGcgctcccccttgggccggtg	13	18	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165715541	T	T	165715541	2	4	7	1	0	0	0	0	0	0	0	1	2346	1074	38	3		3	C6orf118	6	165715541	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	3944370	165715541	5399526	412	6636											
T	6862	broad.mit.edu	37	chr6	166574359	166574359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctggcattgtggctcaCggggagcatgctgggatggg	20	7	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166574359	A	A	166574359	3	1	7	1	0	0	0	0	1	0	0	0	15607	536	19	3	315	3	T	6	166574359	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	858818	166574359	4540708	413	6637											
C6orf70	55780	broad.mit.edu	37	chr6	170155236	170155236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttccaacaatataaaaGtatatcatatgttcaatggt	4	5	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170155236	T	T	170155236	1	4	7	0	1	0	0	0	0	0	0	0	2394	1044	36	3		3	C6orf70	6	170155236	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3580877	170155236	959831	414	6638											
SDK1	221935	broad.mit.edu	37	chr7	4002486	4002486	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctacctggatgtaaccagtGagtacacccaggcccacagc	9	15	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4002486	T	T	4002486	1	4	7	0	1	0	0	0	0	0	0	0	14081	1305	45	3		3	SDK1	7	4002486	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08		4002486	155136177	415	6639											
RSPH10B2	728194	broad.mit.edu	37	chr7	5984566	5984566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgccactgcactccagCctgggcgacagagcaagact	11	13	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5984566	A	A	5984566	1	1	7	0	1	0	0	0	0	0	0	0	13815	754	26	3		3	RSPH10B2	7	5984566	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1982080	5984566	153154097	416	6640											
PMS2	5395	broad.mit.edu	37	chr7	6048746	6048746	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccattggctgctttcgaCgttgtgctccaccctttccg	8	16	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6048746	A	A	6048746	1	1	7	0	1	0	0	0	0	0	0	0	12238	551	19	3		3	PMS2	7	6048746	5'Flank	SNP	C	TCGA-05-4390-01A-02D-1753-08	64180	6048746	153089917	417	6641											
PHF14	9678	broad.mit.edu	37	chr7	11022896	11022896	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatcctatttatagacgGctgtgggatgaatgagcacc	11	7	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11022896	A	A	11022896	1	1	7	0	1	0	0	0	0	0	0	0	11920	1218	42	4		4	PHF14	7	11022896	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4974150	11022896	148115767	418	6642											
THSD7A	221981	broad.mit.edu	37	chr7	11676130	11676130	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaccacatgacgcgtccGgtgctggagcccgctgccgc	13	18	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11676130	T	T	11676130	2	4	7	1	0	0	0	0	0	0	0	1	16002	1115	39	1		1	THSD7A	7	11676130	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	653234	11676130	147462533	419	6643											
TMEM195	392636	broad.mit.edu	37	chr7	15424945	15424945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctatttaaatgtgagaCgttgccaaaattacagcaga	7	7	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15424945	A	A	15424945	1	1	7	0	1	0	0	0	0	0	0	0	16240	551	19	3		3	TMEM195	7	15424945	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3748815	15424945	143713718	420	6644											
ITGB8	3696	broad.mit.edu	37	chr7	20441685	20441685	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattaagcttggaaaagtGtatggaaaatactgtgaaaa	9	2	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20441685	T	T	20441685	2	4	7	1	0	0	0	0	0	0	0	1	7971	1364	48	3		3	ITGB8	7	20441685	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	5016740	20441685	138696978	421	6645											
DNAH11	8701	broad.mit.edu	37	chr7	21788210	21788210	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcaggtgtcgcatcagCcggatcttacgaacccctca	8	15	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21788210	T	T	21788210	2	4	7	1	0	0	0	0	0	0	0	1	4639	738	26	4		4	DNAH11	7	21788210	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1346525	21788210	137350453	422	6646											
OSBPL3	26031	broad.mit.edu	37	chr7	24903001	24903001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtgaccacctccatccCcttgactttggctgaagcaa	7	14	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24903001	A	A	24903001	1	1	7	0	1	0	0	0	0	0	0	0	11373	638	22	2		2	OSBPL3	7	24903001	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3114791	24903001	134235662	423	6647											
AVL9	23080	broad.mit.edu	37	chr7	32591090	32591090	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagatagactcatgaatcaAgtaaatattgtcagtaatac	7	5	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32591090	T	T	32591090	1	4	7	0	1	0	0	0	0	0	0	0	1233	87	3	5		5	AVL9	7	32591090	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	7688089	32591090	126547573	424	6648											
POU6F2	11281	broad.mit.edu	37	chr7	39247226	39247226	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaatctacaaggtaatcCataatgtccatgcgccacgt	7	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39247226	T	T	39247226	1	4	7	0	1	0	0	0	0	0	0	0	12381	609	21	4		4	POU6F2	7	39247226	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	6656136	39247226	119891437	425	6649											
C7orf10	79783	broad.mit.edu	37	chr7	40193523	40193523	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaaccttcatccaccttgCctatgggagatgagttgcgt	11	10	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40193523	G	G	40193523	1	3	7	0	1	0	0	0	0	0	0	0	2401	754	26	4		4	C7orf10	7	40193523	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	946297	40193523	118945140	426	6650											
MYL7	58498	broad.mit.edu	37	chr7	44179470	44179470	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtctgtccctggaaggccGaggcagccaggtgagcatcc	16	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44179470	T	T	44179470	1	4	7	0	1	0	0	0	0	0	0	0	10147	1073	37	3		3	MYL7	7	44179470	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3985947	44179470	114959193	427	6651											
DDC	1644	broad.mit.edu	37	chr7	50607692	50607692	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgagctggcagtggggaagTaggcgaagaagtaggggctg	20	5	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50607692	A	A	50607692	3	1	7	1	0	0	0	0	1	0	0	0	4358	1638	57	5	1254	5	DDC	7	50607692	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	6428222	50607692	108530971	428	6652											
EGFR	1956	broad.mit.edu	37	chr7	55240877	55240877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgacaggaacaagggccaGccccgagaacgggccattag	13	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55240877	T	T	55240877	1	4	7	0	1	0	0	0	0	0	0	0	5007	986	34	3		3	EGFR	7	55240877	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4633185	55240877	103897786	429	6653											
ZNF680	340252	broad.mit.edu	37	chr7	63982531	63982531	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctctagtgtgaattcttaTatgttgtgttagatgtgaaa	9	4	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63982531	C	C	63982531	3	2	7	1	0	0	0	0	1	0	0	0	18214	1406	49	5	995	5	ZNF680	7	63982531	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	8741654	63982531	95156132	430	6654											
ZNF107	51427	broad.mit.edu	37	chr7	64166746	64166746	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctttggccagagcagaacAtaaaagattctttccagaaa	7	9	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64166746	G	G	64166746	3	3	7	1	0	0	0	0	1	0	0	0	17841	217	8	5	70	5	ZNF107	7	64166746	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	184215	64166746	94971917	431	6655											
TYW1B	441250	broad.mit.edu	37	chr7	72281203	72281203	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactttcggttggtaggcCgtcagtgtatgtcgcaacca	12	10	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72281203	A	A	72281203	3	1	7	1	0	0	0	0	1	0	0	0	16945	652	23	1	1886	1	TYW1B	7	72281203	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	8114457	72281203	86857460	432	6656											
CLIP2	7461	broad.mit.edu	37	chr7	73800978	73800978	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgcggggggctttcactgGggccgtgccattcagctgcc	16	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73800978	C	C	73800978	1	2	7	0	1	0	0	0	0	0	0	0	3565	1247	43	4		4	CLIP2	7	73800978	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1519775	73800978	85337685	433	6657											
CACNA2D1	781	broad.mit.edu	37	chr7	81964610	81964610	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtaagaacaatagttactTatttggcttacaagttccca	6	7	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81964610	C	C	81964610	1	2	7	0	1	0	0	0	0	0	0	0	2574	1769	61	5		5	CACNA2D1	7	81964610	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	8163632	81964610	77174053	434	6658											
CACNA2D1	781	broad.mit.edu	37	chr7	81978766	81978766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcagaatttcaccacCagatccacatgagaaatcat	4	12	4	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81978766	A	A	81978766	1	1	7	0	1	0	0	0	0	0	0	0	2574	609	21	2		2	CACNA2D1	7	81978766	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	14156	81978766	77159897	435	6659											
PCLO	27445	broad.mit.edu	37	chr7	82579765	82579765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaatgtactgagtaacaCcatcagactgaacggtgtac	11	9	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82579765	A	A	82579765	3	1	7	1	0	0	0	0	1	0	0	0	11677	507	18	3	5386	3	PCLO	7	82579765	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	600999	82579765	76558898	436	6660											
PCLO	27445	broad.mit.edu	37	chr7	82582433	82582433	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggttcaacagaaaccagAtctttggagggtgatcccaa	10	9	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82582433	G	G	82582433	2	3	7	1	0	0	0	0	0	0	0	1	11677	330	12	5		5	PCLO	7	82582433	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	2668	82582433	76556230	437	6661											
SEMA3D	223117	broad.mit.edu	37	chr7	84702465	84702465	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatattatcatttatgccAcctgttttccaagtagatca	5	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84702465	G	G	84702465	1	3	7	0	1	0	0	0	0	0	0	0	14140	174	6	5		5	SEMA3D	7	84702465	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2120032	84702465	74436198	438	6662											
SEMA3D	223117	broad.mit.edu	37	chr7	84751060	84751060	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatgtatatatttaccttTgtaggttagcttgagtcttg	8	4	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84751060	A	A	84751060	4	1	7	1	0	0	0	0	0	1	0	0	14140	1821	63	5	2253	5	SEMA3D	7	84751060	Nonsense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	48595	84751060	74387603	439	6663											
ABCB1	5243	broad.mit.edu	37	chr7	87135292	87135292	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctaacaagggcacgagctAtggcaatgcgttgtttctgg	13	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87135292	G	G	87135292	3	3	7	1	0	0	0	0	1	0	0	0	40	449	16	5	293	5	ABCB1	7	87135292	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	2384232	87135292	72003371	440	6664											
ABCB1	5243	broad.mit.edu	37	chr7	87173393	87173393	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaagcactttattcgttcAttcttccatcaggattcaca	4	12	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87173393	G	G	87173393	1	3	7	0	1	0	0	0	0	0	0	0	40	232	8	5		5	ABCB1	7	87173393	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	38101	87173393	71965270	441	6665											
DBF4	10926	broad.mit.edu	37	chr7	87536810	87536811	+	Missense_Mutation	DNP	CT	GA	GA													agaattttacacagctacctCtacataaaaacaaacaggaa							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	87536811	GA	GA	87536810	3	3	7	1	0	0	0	0	1	0	0	0	4281	912	32	4	1403	4	DBF4	7	87536810	Missense_Mutation	DNP	CT	TCGA-05-4390-01A-02D-1753-08	363417	87536810	71601853	442	6666											
C7orf63	79846	broad.mit.edu	37	chr7	89900854	89900854	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttaggttaccagcaagcgAgttcatcatacaagattcaa	8	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89900854	T	T	89900854	3	4	7	1	0	0	0	0	1	0	0	0	2434	304	11	5	573	5	C7orf63	7	89900854	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	2364044	89900854	69237809	443	6667											
COL1A2	1278	broad.mit.edu	37	chr7	94054961	94054961	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcccccaggtcgcgatggtCaacccggacacaaggtcagt	12	14	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94054961	T	T	94054961	4	4	7	1	0	0	0	0	0	1	0	0	3710	827	29	4	2991	4	COL1A2	7	94054961	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	4154107	94054961	65083702	444	6668											
COL1A2	1278	broad.mit.edu	37	chr7	94057222	94057222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagatgtccagaccagaCtgacccttctcacaagttga	8	12	2	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94057222	A	A	94057222	1	1	7	0	1	0	0	0	0	0	0	0	3710	580	20	3		3	COL1A2	7	94057222	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2261	94057222	65081441	445	6669											
PON3	5446	broad.mit.edu	37	chr7	94991730	94991730	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcttcataggattaggatGgcatcctgccaaaatgtctc	9	9	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94991730	A	A	94991730	3	1	7	1	0	0	0	0	1	0	0	0	12345	1348	47	4	222	4	PON3	7	94991730	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	934508	94991730	64146933	446	6670											
SHFM1	7979	broad.mit.edu	37	chr7	96318269	96318269	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcttataaccatgtttctcTagttcagctctaagataaaa	4	8	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96318269	C	C	96318269	2	2	7	1	0	0	0	0	0	0	0	1	14391	1509	53	5		5	SHFM1	7	96318269	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	1326539	96318269	62820394	447	6671											
TAC1	6863	broad.mit.edu	37	chr7	97363482	97363482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagagtacatttgtcttGggatagaaatatcgtttcct	11	5	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97363482	T	T	97363482	1	4	7	0	1	0	0	0	0	0	0	0	15617	1363	47	2		2	TAC1	7	97363482	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1045213	97363482	61775181	448	6672											
PILRB	29990	broad.mit.edu	37	chr7	99956677	99956677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagttgcagtccatcaaGgggaccaaactcaccatcac	8	14	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99956677	T	T	99956677	3	4	7	1	0	0	0	0	1	0	0	0	12021	1000	35	2	435	2	PILRB	7	99956677	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2593195	99956677	59181986	449	6673											
MUC17	140453	broad.mit.edu	37	chr7	100685329	100685329	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacaactcctgttgactcCaacacttttgttaccagttc	4	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100685329	A	A	100685329	2	1	7	1	0	0	0	0	0	0	0	1	10068	581	21	2		2	MUC17	7	100685329	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	728652	100685329	58453334	450	6674											
CUX1	1523	broad.mit.edu	37	chr7	101916724	101916724	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcgcccgcctggagcaggAcctgagcatcattcagtcca	11	14	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101916724	T	T	101916724	3	4	7	1	0	0	0	0	1	0	0	0	4097	275	10	5	4771	5	CUX1	7	101916724	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1231395	101916724	57221939	451	6675											
RELN	5649	broad.mit.edu	37	chr7	103151432	103151433	+	Missense_Mutation	DNP	GG	CT	CT													ttctactgtacaatcatcatGgaatagccagtgctcattca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	103151433	CT	CT	103151432	3	2	7	1	0	0	0	0	1	0	0	0	13328	1348	47	4	2302	4	RELN	7	103151432	Missense_Mutation	DNP	GG	TCGA-05-4390-01A-02D-1753-08	1234708	103151432	55987231	452	6676											
CDHR3	222256	broad.mit.edu	37	chr7	105672970	105672970	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtcactgctggggaaGggatggggtcactgagaagt	18	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105672970	A	A	105672970	3	1	7	1	0	0	0	0	1	0	0	0	3150	1000	35	4	2559	4	CDHR3	7	105672970	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2521538	105672970	53465693	453	6677											
PIK3CG	5294	broad.mit.edu	37	chr7	106508039	106508039	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactataaacagcccgtggtGctgagagaggacaactgccg	12	10	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106508039	C	C	106508039	2	2	7	1	0	0	0	0	0	0	0	1	12011	1306	46	4		4	PIK3CG	7	106508039	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	835069	106508039	52630624	454	6678											
LAMB4	22798	broad.mit.edu	37	chr7	107674697	107674697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttatattggcagtcagctGtgtaatggtagagtttgccc	12	6	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107674697	T	T	107674697	3	4	7	1	0	0	0	0	1	0	0	0	8685	1386	48	3	527	3	LAMB4	7	107674697	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1166658	107674697	51463966	455	6679											
LRRN3	54674	broad.mit.edu	37	chr7	110763692	110763692	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatgctacacttaaaagaGttggggataaataatatgcc	8	5	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763692	A	A	110763692	2	1	7	1	0	0	0	0	0	0	0	1	9123	1020	36	4		4	LRRN3	7	110763692	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	3088995	110763692	48374971	456	6680											
ZNF277	11179	broad.mit.edu	37	chr7	111976278	111976278	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgttccaagagtaagaagAcaatgctttagtttggttta	10	4	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111976278	G	G	111976278	1	3	7	0	1	0	0	0	0	0	0	0	17938	290	10	5		5	ZNF277	7	111976278	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1212586	111976278	47162385	457	6681											
WNT2	7472	broad.mit.edu	37	chr7	116962943	116962943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccaaaatcccccgcgcCcgtgcgcgtggacttaccac	8	18	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116962943	A	A	116962943	1	1	7	0	1	0	0	0	0	0	0	0	17513	638	22	2		2	WNT2	7	116962943	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4986665	116962943	42175720	458	6682											
WNT16	51384	broad.mit.edu	37	chr7	120969762	120969762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcccggctgggcattcaGgagtgcgggagccagttcag	18	11	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120969762	T	T	120969762	3	4	7	1	0	0	0	0	1	0	0	0	17512	991	35	2	312	2	WNT16	7	120969762	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4006819	120969762	38168901	459	6683											
PTPRZ1	5803	broad.mit.edu	37	chr7	121693795	121693795	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatagtgtcacacctaacAtacaaagtgcccagtaagca	6	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121693795	C	C	121693795	1	2	7	0	1	0	0	0	0	0	0	0	12922	232	8	5		5	PTPRZ1	7	121693795	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	724033	121693795	37444868	460	6684											
HYAL4	23553	broad.mit.edu	37	chr7	123508325	123508325	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacgtaacatttttatcttAccatgaaagtattatctgaa	4	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123508325	C	C	123508325	1	2	7	0	1	0	0	0	0	0	0	0	7536	406	14	5		5	HYAL4	7	123508325	5'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	1814530	123508325	35630338	461	6685											
TSPAN33	340348	broad.mit.edu	37	chr7	128801519	128801519	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttttcctgtctccacaGgtgatttccatggtgatggt	10	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128801519	T	T	128801519	5	4	7	1	0	0	0	0	0	0	1	0	16773	1014	35	2	108	2	TSPAN33	7	128801519	Splice_Site	SNP	G	TCGA-05-4390-01A-02D-1753-08	5293194	128801519	30337144	462	6686											
FAM40B	57464	broad.mit.edu	37	chr7	129104018	129104018	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagctgctggatactaGctgtcttatctgcaggctct	13	10	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129104018	C	C	129104018	1	2	7	0	1	0	0	0	0	0	0	0	5612	986	34	4		4	FAM40B	7	129104018	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	302499	129104018	30034645	463	6687											
LRGUK	136332	broad.mit.edu	37	chr7	133812369	133812370	+	Frame_Shift_Ins	INS	-	T	T													atgaggaccagggcgagggcINSgaggcgggatccgaggagtc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133812370	T	T	133812369	7	5	7	1	0	1	1	0	0	0	0	0	9030	755	27	0	251	0	LRGUK	7	133812369	Frame_Shift_Ins	INS	-	TCGA-05-4390-01A-02D-1753-08	4708351	133812369	25326294	464	6688											
DGKI	9162	broad.mit.edu	37	chr7	137341270	137341270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttacagactgcacacttcCtcctgagagctgatttctac	6	12	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137341270	A	A	137341270	3	1	7	1	0	0	0	0	1	0	0	0	4511	681	24	2	2698	2	DGKI	7	137341270	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3528901	137341270	21797393	465	6689											
PRSS37	136242	broad.mit.edu	37	chr7	141537550	141537550	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcaggtagcatctctattGggtctcctttcactctcctt	6	13	5	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141537550	C	C	141537550	1	2	7	0	1	0	0	0	0	0	0	0	12732	1363	47	4		4	PRSS37	7	141537550	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4196280	141537550	17601113	466	6690											
C7orf34	135927	broad.mit.edu	37	chr7	142637544	142637544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaccagtcgtccaagaCggcagctgttcacaagcact	10	12	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142637544	A	A	142637544	3	1	7	1	0	0	0	0	1	0	0	0	2414	536	19	3	320	3	C7orf34	7	142637544	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1099994	142637544	16501119	467	6691											
CLCN1	1180	broad.mit.edu	37	chr7	143017055	143017055	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcatcccattgcacgtacGtactccctgccctgctacaa	8	16	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143017055	A	A	143017055	1	1	7	0	1	0	0	0	0	0	0	0	3493	1160	40	4		4	CLCN1	7	143017055	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	379511	143017055	16121608	468	6692											
CNTNAP2	26047	broad.mit.edu	37	chr7	147336050	147336050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttagggatgagcaaagagCagggggttttaaggattgct	15	4	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147336050	A	A	147336050	1	1	7	0	1	0	0	0	0	0	0	0	3679	725	25	3		3	CNTNAP2	7	147336050	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4318995	147336050	11802613	469	6693											
SSPO	23145	broad.mit.edu	37	chr7	149484826	149484826	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccgctcttcacattatgCcacgcggaggtccccccgca	9	18	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149484826	G	G	149484826	3	3	7	1	0	0	0	0	1	0	0	0	15307	747	26	4	3742	4	SSPO	7	149484826	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2148776	149484826	9653837	470	6694											
ZNF862	643641	broad.mit.edu	37	chr7	149561358	149561358	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacaccagccaggaggcCcccgggatgtcctgagggac	13	17	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149561358	T	T	149561358	2	4	7	1	0	0	0	0	0	0	0	1	18324	610	22	4		4	ZNF862	7	149561358	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	76532	149561358	9577305	471	6695											
ZNF775	285971	broad.mit.edu	37	chr7	150094431	150094431	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatctgcaacgagtgtggcAagagcttcacctggtggtcg	13	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150094431	C	C	150094431	3	2	7	1	0	0	0	0	1	0	0	0	18277	131	5	5	868	5	ZNF775	7	150094431	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	533073	150094431	9044232	472	6696											
GIMAP6	474344	broad.mit.edu	37	chr7	150324760	150324761	+	3'UTR	DNP	GG	TT	TT													aaacagagggctggacacagGggggtgcaaaggctgatggt					rs114252711	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	150324761	TT	TT	150324760	1	4	7	0	1	0	0	0	0	0	0	0	6447	1247	43	2		2	GIMAP6	7	150324760	3'UTR	DNP	GG	TCGA-05-4390-01A-02D-1753-08	230329	150324760	8813903	473	6697											
TMEM176B	28959	broad.mit.edu	37	chr7	150488658	150488658	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtctgctccctagagggCgaagggggcactgaattctc	15	10	2	2	rs146845592	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150488658	A	A	150488658	2	1	7	1	0	0	0	0	0	0	0	1	16216	755	27	3		3	TMEM176B	7	150488658	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	163898	150488658	8650005	474	6698											
ABP1	26	broad.mit.edu	37	chr7	150553761	150553761	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccaccatggccaagaacaCcgtgtttctcatcgagatgc	8	14	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150553761	G	G	150553761	3	3	7	1	0	0	0	0	1	0	0	0	98	507	18	4	205	4	ABP1	7	150553761	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	65103	150553761	8584902	475	6699											
PRKAG2	51422	broad.mit.edu	37	chr7	151261007	151261007	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcgcctatatgccaagtagTgtgccaggttctgggacagg	13	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151261007	A	A	151261007	1	1	7	0	1	0	0	0	0	0	0	0	12607	1711	59	5		5	PRKAG2	7	151261007	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	707246	151261007	7877656	476	6700											
DPP6	1804	broad.mit.edu	37	chr7	154172174	154172174	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttccccatgcctcaccccCactttcaataggttgggtct	7	16	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154172174	G	G	154172174	1	3	7	0	1	0	0	0	0	0	0	0	4770	609	21	4		4	DPP6	7	154172174	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2911167	154172174	4966489	477	6701											
PTPRN2	5799	broad.mit.edu	37	chr7	158109546	158109546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaacgccacgcgcaggCgctgcagggccacgggcgac	15	16	1	0	rs145815332		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158109546	A	A	158109546	3	1	7	1	0	0	0	0	1	0	0	0	12916	768	27	3	2889	3	PTPRN2	7	158109546	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3937372	158109546	1029117	478	6702											
MYOM2	9172	broad.mit.edu	37	chr8	2027544	2027544	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcacaggttgtagtcctaAtgcagaggagatgcagagct	12	8	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2027544	G	G	2027544	1	3	7	0	1	0	0	0	0	0	0	0	10186	116	4	5		5	MYOM2	8	2027544	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08		2027544	144336478	479	6703											
MCPH1	79648	broad.mit.edu	37	chr8	6296380	6296380	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaagggaagaaggaaaAcggggtgtggggggttgttc	20	2	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6296380	T	T	6296380	1	4	7	0	1	0	0	0	0	0	0	0	9491	58	2	5		5	MCPH1	8	6296380	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	4268836	6296380	140067642	480	6704											
PRSS55	203074	broad.mit.edu	37	chr8	10389062	10389062	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagaccaatgctggtatgtGactgctcagcttcccctggg	11	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10389062	T	T	10389062	1	4	7	0	1	0	0	0	0	0	0	0	12740	1305	45	3		3	PRSS55	8	10389062	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4092682	10389062	135974960	481	6705											
MTMR9	66036	broad.mit.edu	37	chr8	11174138	11174138	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtagaatgctctgtcatgtGatctcaccaggatatgactg	11	8	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11174138	C	C	11174138	1	2	7	0	1	0	0	0	0	0	0	0	10044	1305	45	4		4	MTMR9	8	11174138	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	785076	11174138	135189884	482	6706											
SGCZ	137868	broad.mit.edu	37	chr8	13965682	13965682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccttacctgagatcttGggatggctctgctctgatgt	11	10	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13965682	T	T	13965682	3	4	7	1	0	0	0	0	1	0	0	0	14317	1357	47	2	340	2	SGCZ	8	13965682	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2791544	13965682	132398340	483	6707											
BMP1	649	broad.mit.edu	37	chr8	22053224	22053224	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggaagtacagtggctcaAtcttagctcaccatagcctc	9	12	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22053224	T	T	22053224	1	4	7	0	1	0	0	0	0	0	0	0	1462	116	4	5		5	BMP1	8	22053224	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	8087542	22053224	124310798	484	6708											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24254778	24254778	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatataagtctctatatctCccagaggatacttcacacat	4	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24254778	A	A	24254778	1	1	7	0	1	0	0	0	0	0	0	0	254	870	30	3		3	ADAMDEC1	8	24254778	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2201554	24254778	122109244	485	6709											
CLU	1191	broad.mit.edu	37	chr8	27466505	27466505	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgagcagtgtcttgcgctCttcgtttgttttttctatga	10	8	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27466505	T	T	27466505	3	4	7	1	0	0	0	0	1	0	0	0	3600	922	32	4	1181	4	CLU	8	27466505	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3211727	27466505	118897517	486	6710											
TEX15	56154	broad.mit.edu	37	chr8	30695124	30695124	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaattggctttgagagcacCgacgcatcaggcacaagaga	11	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30695124	T	T	30695124	2	4	7	1	0	0	0	0	0	0	0	1	15901	639	23	4		4	TEX15	8	30695124	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	3228619	30695124	115668898	487	6711											
UNC5D	137970	broad.mit.edu	37	chr8	35608282	35608282	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtaactccctggattaCaacttgagagtttactgtgt	8	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35608282	A	A	35608282	4	1	7	1	0	0	0	0	0	1	0	0	17121	489	17	3	2168	3	UNC5D	8	35608282	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	4913158	35608282	110755740	488	6712											
GOT1L1	137362	broad.mit.edu	37	chr8	37794932	37794932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacagccccccactagctGgtacatgggaaacagagaga	10	12	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37794932	T	T	37794932	1	4	7	0	1	0	0	0	0	0	0	0	6644	1363	47	2		2	GOT1L1	8	37794932	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2186650	37794932	108569090	489	6713											
ANK1	286	broad.mit.edu	37	chr8	41548121	41548121	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattccttccaacacctgCaggagaggaaaagcagatac	9	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41548121	A	A	41548121	1	1	7	0	1	0	0	0	0	0	0	0	620	725	25	3		3	ANK1	8	41548121	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3753189	41548121	104815901	490	6714											
HOOK3	84376	broad.mit.edu	37	chr8	42823402	42823402	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatggtttcaggcaagctctCagttatgacatgtagcttac	10	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42823402	T	T	42823402	1	4	7	0	1	0	0	0	0	0	0	0	7351	841	29	4		4	HOOK3	8	42823402	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1275281	42823402	103540620	491	6715											
SNTG1	54212	broad.mit.edu	37	chr8	51664619	51664619	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcagatgatggcaagaGcaaaatcaaatttttgtttc	7	6	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51664619	C	C	51664619	3	2	7	1	0	0	0	0	1	0	0	0	14988	971	34	4	1405	4	SNTG1	8	51664619	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	8841217	51664619	94699403	492	6716											
NSMAF	8439	broad.mit.edu	37	chr8	59502547	59502547	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacgtcgaatcacagagcAgggtgcacagatacatacac	10	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59502547	G	G	59502547	1	3	7	0	1	0	0	0	0	0	0	0	10769	203	7	5		5	NSMAF	8	59502547	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	7837928	59502547	86861475	493	6717											
CLVS1	157807	broad.mit.edu	37	chr8	62289043	62289043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctttgggtacaggacgcCagtgtgaccctccaggcggg	14	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62289043	A	A	62289043	1	1	7	0	1	0	0	0	0	0	0	0	3603	609	21	2		2	CLVS1	8	62289043	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2786496	62289043	84074979	494	6718											
ASPH	444	broad.mit.edu	37	chr8	62491157	62491158	+	Intron	DNP	CA	AG	AG													agaccaagtggagcctcctgCagcagcagaagatggctcgg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	62491158	AG	AG	62491157	1	1	7	0	1	0	0	0	0	0	0	0	1057	725	25	3		3	ASPH	8	62491157	Intron	DNP	CA	TCGA-05-4390-01A-02D-1753-08	202114	62491157	83872865	495	6719											
ASPH	444	broad.mit.edu	37	chr8	62550537	62550537	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgtgaatcttctacaggAttatcctcagggggagcagt	11	9	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62550537	G	G	62550537	2	3	7	1	0	0	0	0	0	0	0	1	1057	330	12	5		5	ASPH	8	62550537	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	59380	62550537	83813485	496	6720											
NKAIN3	286183	broad.mit.edu	37	chr8	63768798	63768798	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcactggttcatttgtttCccaatagagctttattggag	8	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63768798	A	A	63768798	1	1	7	0	1	0	0	0	0	0	0	0	10532	870	30	3		3	NKAIN3	8	63768798	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1218261	63768798	82595224	497	6721											
SGK3	23678	broad.mit.edu	37	chr8	67710699	67710699	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaattaaaacAggtttcatgtatttaagtag	5	2	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67710699	T	T	67710699	1	4	7	0	1	0	0	0	0	0	0	0	14325	203	7	5		5	SGK3	8	67710699	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	3941901	67710699	78653323	498	6722											
ARFGEF1	10565	broad.mit.edu	37	chr8	68131718	68131718	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaagattctgaaaacaattCtaaataaatcctgccaccag	4	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68131718	A	A	68131718	3	1	7	1	0	0	0	0	1	0	0	0	854	913	32	3	1303	3	ARFGEF1	8	68131718	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	421019	68131718	78232304	499	6723											
PREX2	80243	broad.mit.edu	37	chr8	69015185	69015185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaagtaaaattatgccctGttgggaggaacactttctcc	10	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69015185	T	T	69015185	1	4	7	0	1	0	0	0	0	0	0	0	12583	1392	48	3		3	PREX2	8	69015185	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	883467	69015185	77348837	500	6724											
TRPA1	8989	broad.mit.edu	37	chr8	72967563	72967563	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaataaattggataaaagtaCttagtgagatataaagttag	8	1	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72967563	T	T	72967563	1	4	7	0	1	0	0	0	0	0	0	0	16702	580	20	4		4	TRPA1	8	72967563	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3952378	72967563	73396459	501	6725											
JPH1	56704	broad.mit.edu	37	chr8	75227183	75227183	+	Missense_Mutation	SNP	T	A	A													tgtccaccttctccctagttTttgtatgtcttattggtata							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75227183	A	A	75227183	3	1	7	1	0	0	0	0	1	0	0	0	8030	1841	64	5	949	5	JPH1	8	75227183	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	2259620	75227183	71136839	502	6726	25	3									
JPH1	56704	broad.mit.edu	37	chr8	75227185	75227185	+	Silent	SNP	T	G	G													tccaccttctccctagttttTgtatgtcttattggtataag							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75227185	G	G	75227185	2	3	7	1	0	0	0	0	0	0	0	1	8030	1799	63	5		5	JPH1	8	75227185	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	2	75227185	71136837	503	6727	25	3									
JPH1	56704	broad.mit.edu	37	chr8	75227187	75227187	+	Missense_Mutation	SNP	T	A	A													caccttctccctagtttttgTatgtcttattggtataagct							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75227187	A	A	75227187	3	1	7	1	0	0	0	0	1	0	0	0	8030	1638	57	5	953	5	JPH1	8	75227187	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	2	75227187	71136835	504	6728	25	3									
WWP1	11059	broad.mit.edu	37	chr8	87439718	87439718	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatattagtggtagaatgggAaggtaatttaggtaaaataa	12	0	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87439718	T	T	87439718	1	4	7	0	1	0	0	0	0	0	0	0	17542	261	9	5		5	WWP1	8	87439718	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	12212531	87439718	58924304	505	6729											
WWP1	11059	broad.mit.edu	37	chr8	87479135	87479135	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgaatgtggcttcttAttttggaggagctcttgcat	11	5	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87479135	G	G	87479135	1	3	7	0	1	0	0	0	0	0	0	0	17542	464	16	5		5	WWP1	8	87479135	3'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	39417	87479135	58884887	506	6730											
FAM82B	51115	broad.mit.edu	37	chr8	87516524	87516524	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacccaggatgtatcccaaGacaaccaggagatgcaagat	10	11	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87516524	A	A	87516524	1	1	7	0	1	0	0	0	0	0	0	0	5685	957	33	4		4	FAM82B	8	87516524	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	37389	87516524	58847498	507	6731											
CNGB3	54714	broad.mit.edu	37	chr8	87755645	87755645	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaactactaaacaatcaTatatcgtagcagtgattaaa	5	6	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87755645	C	C	87755645	1	2	7	0	1	0	0	0	0	0	0	0	3633	1421	49	5		5	CNGB3	8	87755645	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	239121	87755645	58608377	508	6732											
CNBD1	168975	broad.mit.edu	37	chr8	88218342	88218342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttagtaagactgtcttttccGaaacctggttgaaaggcagc	10	8	1	2	rs114439288	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88218342	C	C	88218342	3	2	7	1	0	0	0	0	1	0	0	0	3623	1059	37	4	571	4	CNBD1	8	88218342	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	462697	88218342	58145680	509	6733											
SLC26A7	115111	broad.mit.edu	37	chr8	92401799	92401799	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccattatttacaaaggacgTagaactttgcctaccatcac	5	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92401799	A	A	92401799	1	1	7	0	1	0	0	0	0	0	0	0	14636	1653	57	5		5	SLC26A7	8	92401799	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	4183457	92401799	53962223	510	6734											
RUNX1T1	862	broad.mit.edu	37	chr8	93026724	93026724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattataacaaaatacttgCgagaacggtgtctacatgtc	7	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93026724	A	A	93026724	1	1	7	0	1	0	0	0	0	0	0	0	13858	783	27	3		3	RUNX1T1	8	93026724	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	624925	93026724	53337298	511	6735											
UQCRB	7381	broad.mit.edu	37	chr8	97247898	97247898	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacgactgccgttcagcaCctgcgtaagcacctctcggc	10	16	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97247898	A	A	97247898	1	1	7	0	1	0	0	0	0	0	0	0	17144	522	18	3		3	UQCRB	8	97247898	5'Flank	SNP	C	TCGA-05-4390-01A-02D-1753-08	4221174	97247898	49116124	512	6736											
LAPTM4B	55353	broad.mit.edu	37	chr8	98837176	98837176	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagctgttataatatgtgcAtttattgcttatgtcaataa	7	4	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98837176	G	G	98837176	1	3	7	0	1	0	0	0	0	0	0	0	8697	232	8	5		5	LAPTM4B	8	98837176	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1589278	98837176	47526846	513	6737											
RIMS2	9699	broad.mit.edu	37	chr8	104948734	104948734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaaattttaggacaaaaCttatagttctatgtaagttc	5	4	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104948734	A	A	104948734	1	1	7	0	1	0	0	0	0	0	0	0	13479	580	20	3		3	RIMS2	8	104948734	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	6111558	104948734	41415288	514	6738											
DPYS	1807	broad.mit.edu	37	chr8	105393434	105393434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcacacacttcaggggtGggcctgtttcctggtccctg	13	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105393434	T	T	105393434	3	4	7	1	0	0	0	0	1	0	0	0	4786	1348	47	2	11	2	DPYS	8	105393434	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	444700	105393434	40970588	515	6739											
ZFPM2	23414	broad.mit.edu	37	chr8	106801085	106801085	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtaccctgcacgcctgctGgactcaattcagctgcttcc	8	15	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106801085	C	C	106801085	2	2	7	1	0	0	0	0	0	0	0	1	17784	1335	47	4		4	ZFPM2	8	106801085	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	1407651	106801085	39562937	516	6740											
ZFPM2	23414	broad.mit.edu	37	chr8	106814109	106814109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttgagtcccaacactgGccaaacctccataaaccttc	5	15	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106814109	T	T	106814109	3	4	7	1	0	0	0	0	1	0	0	0	17784	1203	42	3	1829	3	ZFPM2	8	106814109	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	13024	106814109	39549913	517	6741											
CSMD3	114788	broad.mit.edu	37	chr8	113293448	113293448	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgttccattggctgtgcActgtctaactgaaggtccag	10	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113293448	C	C	113293448	3	2	7	1	0	0	0	0	1	0	0	0	3980	159	6	5	1712	5	CSMD3	8	113293448	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	6479339	113293448	33070574	518	6742											
CSMD3	114788	broad.mit.edu	37	chr8	113293554	113293554	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagactttcccattggctgtGgttcctgggttaccacactg	10	11	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113293554	A	A	113293554	2	1	7	1	0	0	0	0	0	0	0	1	3980	1335	47	4		4	CSMD3	8	113293554	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	106	113293554	33070468	519	6743											
CSMD3	114788	broad.mit.edu	37	chr8	113694845	113694845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggtattccaggatcagGgcattcattatgtccaaatg	10	7	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113694845	T	T	113694845	3	4	7	1	0	0	0	0	1	0	0	0	3980	1232	43	2	8844	2	CSMD3	8	113694845	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	401291	113694845	32669177	520	6744											
EIF3H	8667	broad.mit.edu	37	chr8	117658943	117658943	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaccccactgctctgaAttccaacctcagtttttatc	5	14	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117658943	T	T	117658943	1	4	7	0	1	0	0	0	0	0	0	0	5060	116	4	5		5	EIF3H	8	117658943	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	3964098	117658943	28705079	521	6745											
SLC30A8	169026	broad.mit.edu	37	chr8	118174144	118174144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggtgagtttgagtttacCcaccatcctagtacttatgt	8	8	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118174144	A	A	118174144	1	1	7	0	1	0	0	0	0	0	0	0	14675	638	22	2		2	SLC30A8	8	118174144	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	515201	118174144	28189878	522	6746											
ENPP2	5168	broad.mit.edu	37	chr8	120602768	120602768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagcattgttgctaaatttgGatcgaattcttcctagagtt	8	6	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120602768	T	T	120602768	3	4	7	1	0	0	0	0	1	0	0	0	5172	1174	41	3	1538	3	ENPP2	8	120602768	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2428624	120602768	25761254	523	6747											
COL14A1	7373	broad.mit.edu	37	chr8	121209921	121209921	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaaatctttttgaaaaTttatagccaggccaaaataa	5	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121209921	C	C	121209921	1	2	7	0	1	0	0	0	0	0	0	0	3703	1508	52	5		5	COL14A1	8	121209921	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	607153	121209921	25154101	524	6748											
COL14A1	7373	broad.mit.edu	37	chr8	121216170	121216170	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtgcacaagcctattgtGaattgggaaaattcttttca	9	6	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121216170	T	T	121216170	1	4	7	0	1	0	0	0	0	0	0	0	3703	1305	45	3		3	COL14A1	8	121216170	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	6249	121216170	25147852	525	6749											
COL22A1	169044	broad.mit.edu	37	chr8	139648980	139648980	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttccttataaagtaaattTttacctgatcacctttctgc	5	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139648980	G	G	139648980	1	3	7	0	1	0	0	0	0	0	0	0	3713	1856	64	5		5	COL22A1	8	139648980	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	18432810	139648980	6715042	526	6750											
BAI1	575	broad.mit.edu	37	chr8	143614706	143614706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgctgctggcgctgacctGgatgtcggctgtgctcgccg	16	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143614706	T	T	143614706	3	4	7	1	0	0	0	0	1	0	0	0	1303	1357	47	2	3543	2	BAI1	8	143614706	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3965726	143614706	2749316	527	6751											
SLC39A4	55630	broad.mit.edu	37	chr8	145638799	145638799	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcgcagaggcccgtgggttCgcgtggcctgtcgcctaccg	17	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145638799	A	A	145638799	1	1	7	0	1	0	0	0	0	0	0	0	14734	899	31	3		3	SLC39A4	8	145638799	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2024093	145638799	725223	528	6752											
SMARCA2	6595	broad.mit.edu	37	chr9	2097338	2097338	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaaggatctgaaatgtctGaccagttaataattaattct	8	5	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2097338	T	T	2097338	1	4	7	0	1	0	0	0	0	0	0	0	14883	1305	45	3		3	SMARCA2	9	2097338	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08		2097338	139116093	529	6753											
KIAA2026	158358	broad.mit.edu	37	chr9	5968614	5968614	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggatcaaaattattttcCtgctctttcttgaaggaaga	8	7	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5968614	T	T	5968614	2	4	7	1	0	0	0	0	0	0	0	1	8340	680	24	4		4	KIAA2026	9	5968614	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	3871276	5968614	135244817	530	6754											
PTPRD	5789	broad.mit.edu	37	chr9	8527333	8527333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgaagtgcgcttcagaaCtaagcacttaccaatagatt	9	8	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8527333	A	A	8527333	1	1	7	0	1	0	0	0	0	0	0	0	12907	580	20	3		3	PTPRD	9	8527333	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2558719	8527333	132686098	531	6755											
C9orf150	286343	broad.mit.edu	37	chr9	12821241	12821242	+	Intron	INS	-	A	A													accatcagtcagcaattatcINSaaaaagttcctgacaaccag							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12821242	A	A	12821241	6	5	7	0	1	1	1	0	0	0	0	0	2488	841	29	0		0	C9orf150	9	12821241	Intron	INS	-	TCGA-05-4390-01A-02D-1753-08	4293908	12821241	128392190	532	6756											
FREM1	158326	broad.mit.edu	37	chr9	14813122	14813122	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgacaaattctttgacAggtaatccattgctcatagt	7	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14813122	T	T	14813122	1	4	7	0	1	0	0	0	0	0	0	0	6104	203	7	5		5	FREM1	9	14813122	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1991881	14813122	126400309	533	6757											
C9orf93	203238	broad.mit.edu	37	chr9	15971692	15971692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtattggggatttcttacCattgaaagctgaacttgata	10	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15971692	A	A	15971692	3	1	7	1	0	0	0	0	1	0	0	0	2532	594	21	2	3937	2	C9orf93	9	15971692	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1158570	15971692	125241739	534	6758											
DENND4C	55667	broad.mit.edu	37	chr9	19296314	19296314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatacatttgtttgtgtaAtttttagcagcaaagttgga	8	3	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19296314	T	T	19296314	1	4	7	0	1	0	0	0	0	0	0	0	4475	116	4	5		5	DENND4C	9	19296314	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	3324622	19296314	121917117	535	6759											
MTAP	4507	broad.mit.edu	37	chr9	21811756	21811756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatccatgccctcgcccGtgtaccagtacaggaaagct	8	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21811756	T	T	21811756	1	4	7	0	1	0	0	0	0	0	0	0	10005	1160	40	3		3	MTAP	9	21811756	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2515442	21811756	119401675	536	6760											
LINGO2	158038	broad.mit.edu	37	chr9	27949528	27949528	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtctgggccagcacacAtaggttgctggccaccaaac	12	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27949528	C	C	27949528	3	2	7	1	0	0	0	0	1	0	0	0	8888	217	8	5	682	5	LINGO2	9	27949528	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	6137772	27949528	113263903	537	6761											
CD72	971	broad.mit.edu	37	chr9	35618283	35618283	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaacctcagatctgcataGgtgatggcctcagccatggt	10	11	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35618283	T	T	35618283	2	4	7	1	0	0	0	0	0	0	0	1	3064	987	35	2		2	CD72	9	35618283	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	7668755	35618283	105595148	538	6762											
GBA2	57704	broad.mit.edu	37	chr9	35741095	35741095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attagactcagacggtcccaGtagagcgcctcctgacccca	9	15	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35741095	A	A	35741095	1	1	7	0	1	0	0	0	0	0	0	0	6329	1044	36	4		4	GBA2	9	35741095	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	122812	35741095	105472336	539	6763											
PAX5	5079	broad.mit.edu	37	chr9	37014885	37014885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcagtaacccctaaggGgccttggtgaaaaaagagac	11	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37014885	T	T	37014885	1	4	7	0	1	0	0	0	0	0	0	0	11576	1247	43	2		2	PAX5	9	37014885	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1273790	37014885	104198546	540	6764											
ALDH1B1	219	broad.mit.edu	37	chr9	38396132	38396132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaccttggacaatgggaaGcctttccaagagtcttacgc	11	10	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38396132	T	T	38396132	3	4	7	1	0	0	0	0	1	0	0	0	493	962	34	3	389	3	ALDH1B1	9	38396132	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1381247	38396132	102817299	541	6765											
FAM75A6	389730	broad.mit.edu	37	chr9	43626635	43626635	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagaaccttccgtgggaaGcttttcatgtccctggatag	10	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43626635	C	C	43626635	3	2	7	1	0	0	0	0	1	0	0	0	5674	962	34	4	1983	4	FAM75A6	9	43626635	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	5230503	43626635	97586796	542	6766											
TRPM3	80036	broad.mit.edu	37	chr9	73253968	73253968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaaagtgccttagtttGgccctaccgtattgtacaat	7	8	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73253968	T	T	73253968	1	4	7	0	1	0	0	0	0	0	0	0	16712	1363	47	2		2	TRPM3	9	73253968	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	29627333	73253968	67959463	543	6767											
GDA	9615	broad.mit.edu	37	chr9	74828893	74828893	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagaccactgaggaatcgatCaaggaaactgagaggtaaaa	12	6	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74828893	G	G	74828893	3	3	7	1	0	0	0	0	1	0	0	0	6369	816	29	4	582	4	GDA	9	74828893	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1574925	74828893	66384538	544	6768											
RASEF	158158	broad.mit.edu	37	chr9	85619415	85619415	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagacgagttaacatacctGtcatagcctagaggttgagg	11	7	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85619415	A	A	85619415	2	1	7	1	0	0	0	0	0	0	0	1	13176	1368	48	4		4	RASEF	9	85619415	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	10790522	85619415	55594016	545	6769											
NTRK2	4915	broad.mit.edu	37	chr9	87342645	87342645	+	Frame_Shift_Del	DEL	C	-	-													ccattcactgtgaaaggcaaCcccaaaccagcgcttcagtg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87342645	-	-	87342645	7	5	7	1	0	1	0	1	0	0	0	0	10802	506	18	0	960	0	NTRK2	9	87342645	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	1723230	87342645	53870786	546	6770											
CDK20	23552	broad.mit.edu	37	chr9	90588866	90588866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccatctcctgcagagCcttaatctcccgcagggcct	8	17	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90588866	A	A	90588866	3	1	7	1	0	0	0	0	1	0	0	0	3167	739	26	3	908	3	CDK20	9	90588866	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3246221	90588866	50624565	547	6771											
NXNL2	158046	broad.mit.edu	37	chr9	91150599	91150599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagatgctggacttcatgCgcgagctgcatggcgcctgg	16	10	1	1	rs146062765		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91150599	A	A	91150599	3	1	7	1	0	0	0	0	1	0	0	0	10884	768	27	3	252	3	NXNL2	9	91150599	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	561733	91150599	50062832	548	6772											
ROR2	4920	broad.mit.edu	37	chr9	94484942	94484942	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaaataggaccaacaatGtgtgcggggcacagacggct	12	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94484942	T	T	94484942	1	4	7	0	1	0	0	0	0	0	0	0	13638	1392	48	3		3	ROR2	9	94484942	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	3334343	94484942	46728489	549	6773											
SUSD3	203328	broad.mit.edu	37	chr9	95840308	95840308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgatctcagggtcctcccGggaggcgcctcttggcacca	12	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95840308	T	T	95840308	1	4	7	0	1	0	0	0	0	0	0	0	15527	1131	39	1		1	SUSD3	9	95840308	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1355366	95840308	45373123	550	6774											
CDC14B	8555	broad.mit.edu	37	chr9	99296851	99296851	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagaccagcacaattcGtttttaaatgtattctcccc	8	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99296851	A	A	99296851	1	1	7	0	1	0	0	0	0	0	0	0	3087	1160	40	4		4	CDC14B	9	99296851	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3456543	99296851	41916580	551	6775											
KIAA1529	57653	broad.mit.edu	37	chr9	100057180	100057180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accattatcacatcaaccctGtgcttgtcagcttttgccac	5	14	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100057180	T	T	100057180	3	4	7	1	0	0	0	0	1	0	0	0	8310	1377	48	3	314	3	KIAA1529	9	100057180	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	760329	100057180	41156251	552	6776											
HEMGN	55363	broad.mit.edu	37	chr9	100692396	100692396	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggcccacctgtttcttgGtgtggttctggaaagcattc	13	9	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100692396	C	C	100692396	3	2	7	1	0	0	0	0	1	0	0	0	7117	1252	44	4	181	4	HEMGN	9	100692396	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	635216	100692396	40521035	553	6777											
GABBR2	9568	broad.mit.edu	37	chr9	101147903	101147903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctatcatataccactggCttatgcagaatgacttacgg	7	9	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101147903	A	A	101147903	1	1	7	0	1	0	0	0	0	0	0	0	6216	812	28	3		3	GABBR2	9	101147903	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	455507	101147903	40065528	554	6778											
COL15A1	1306	broad.mit.edu	37	chr9	101796806	101796806	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatatgcattaattggtccAtgtttttgtttttgtttttt	6	4	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101796806	G	G	101796806	1	3	7	0	1	0	0	0	0	0	0	0	3704	232	8	5		5	COL15A1	9	101796806	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	648903	101796806	39416625	555	6779											
COL15A1	1306	broad.mit.edu	37	chr9	101797398	101797398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcctggaccccctgggCccccaggccctggatgcaca	12	19	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101797398	A	A	101797398	3	1	7	1	0	0	0	0	1	0	0	0	3704	739	26	3	2252	3	COL15A1	9	101797398	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	592	101797398	39416033	556	6780											
TMEFF1	8577	broad.mit.edu	37	chr9	103279053	103279053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatgcagaaaatgttgGgtgagttggttgaggggaag	18	1	0	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103279053	T	T	103279053	3	4	7	1	0	0	0	0	1	0	0	0	16136	1246	43	2	578	2	TMEFF1	9	103279053	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1481655	103279053	37934378	557	6781											
TMEFF1	8577	broad.mit.edu	37	chr9	103310025	103310025	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttttgtcttttccaacaGgtgtgtatgtaatatagatt	7	4	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103310025	T	T	103310025	5	4	7	1	0	0	0	0	0	0	1	0	16136	1014	35	2	582	2	TMEFF1	9	103310025	Splice_Site	SNP	G	TCGA-05-4390-01A-02D-1753-08	30972	103310025	37903406	558	6782											
BAAT	570	broad.mit.edu	37	chr9	104125073	104125073	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacttgagttgtctcaaaAgtgcgatagagctctagtaa	9	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104125073	C	C	104125073	2	2	7	1	0	0	0	0	0	0	0	1	1285	59	3	5		5	BAAT	9	104125073	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	815048	104125073	37088358	559	6783											
C9orf125	84302	broad.mit.edu	37	chr9	104238293	104238293	+	Frame_Shift_Del	DEL	C	-	-													agtacagtgccatgtccttgCcaaagcccttgtggcagtac							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104238293	-	-	104238293	7	5	7	1	0	1	0	1	0	0	0	0	2480	739	26	0	133	0	C9orf125	9	104238293	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	113220	104238293	36975138	560	6784											
GRIN3A	116443	broad.mit.edu	37	chr9	104385694	104385694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgtccatgatgaaggcGtctagtttctctggatcatt	10	8	3	2	rs143827340		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104385694	T	T	104385694	3	4	7	1	0	0	0	0	1	0	0	0	6849	1136	40	3	847	3	GRIN3A	9	104385694	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	147401	104385694	36827737	561	6785											
GRIN3A	116443	broad.mit.edu	37	chr9	104433358	104433358	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttactctgatggaaccacTgaggcctctgaaagtggtat	10	8	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104433358	C	C	104433358	3	2	7	1	0	0	0	0	1	0	0	0	6849	1580	55	5	2039	5	GRIN3A	9	104433358	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	47664	104433358	36780073	562	6786											
GRIN3A	116443	broad.mit.edu	37	chr9	104449552	104449552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaacatagggtacttttGctttcttatgaggcttaatc	7	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104449552	T	T	104449552	1	4	7	0	1	0	0	0	0	0	0	0	6849	1334	46	3		3	GRIN3A	9	104449552	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	16194	104449552	36763879	563	6787											
CYLC2	1539	broad.mit.edu	37	chr9	105768052	105768052	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgaatttgtgagaaaacAagaggcctcaaagaattaaa	9	5	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105768052	C	C	105768052	1	2	7	0	1	0	0	0	0	0	0	0	4175	145	5	5		5	CYLC2	9	105768052	3'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	1318500	105768052	35445379	564	6788											
FKTN	2218	broad.mit.edu	37	chr9	108337293	108337293	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagatactttcaaaagacaaCcaagtgagcagcacagacta	8	9	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108337293	G	G	108337293	1	3	7	0	1	0	0	0	0	0	0	0	5976	522	18	4		4	FKTN	9	108337293	5'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	2569241	108337293	32876138	565	6789											
ZNF618	114991	broad.mit.edu	37	chr9	116811732	116811732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgcgagttctacagccGggccaagaagatgaacctca	11	11	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116811732	T	T	116811732	3	4	7	1	0	0	0	0	1	0	0	0	18169	1116	39	1	1925	1	ZNF618	9	116811732	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	8474439	116811732	24401699	566	6790											
TLR4	7099	broad.mit.edu	37	chr9	120476380	120476380	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataagttctattttcacctGatgcttcttgctggctgcat	7	9	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120476380	T	T	120476380	2	4	7	1	0	0	0	0	0	0	0	1	16076	1277	45	3		3	TLR4	9	120476380	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	3664648	120476380	20737051	567	6791											
RABGAP1	23637	broad.mit.edu	37	chr9	125796810	125796811	+	Intron	DNP	GG	TT	TT													actgttggcagcagccaagcGgcagcatgaagtgacagatc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	125796811	TT	TT	125796810	1	4	7	0	1	0	0	0	0	0	0	0	13072	1131	39	1		1	RABGAP1	9	125796810	Intron	DNP	GG	TCGA-05-4390-01A-02D-1753-08	5320430	125796810	15416621	568	6792											
MAPKAP1	79109	broad.mit.edu	37	chr9	128434679	128434679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatagccctgagtctcacCattgcttccctgaatttctg	6	13	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128434679	A	A	128434679	3	1	7	1	0	0	0	0	1	0	0	0	9380	594	21	2	1455	2	MAPKAP1	9	128434679	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2637869	128434679	12778752	569	6793											
ZNF79	7633	broad.mit.edu	37	chr9	130206726	130206726	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactggagagaagccttaCaagtgcagtgaatgtggaag	13	7	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130206726	A	A	130206726	4	1	7	1	0	0	0	0	0	1	0	0	18290	489	17	3	765	3	ZNF79	9	130206726	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1772047	130206726	11006705	570	6794											
ODF2	4957	broad.mit.edu	37	chr9	131262412	131262412	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagcagtccgagagcaccAaccgcagcatgcagaactac	11	13	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131262412	C	C	131262412	3	2	7	1	0	0	0	0	1	0	0	0	10922	130	5	5	2564	5	ODF2	9	131262412	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1055686	131262412	9951019	571	6795											
SETX	23064	broad.mit.edu	37	chr9	135152556	135152556	+	Intron	DEL	G	-	-													ctgtctgtaaaaaaaaaaaaGcagtcaacattcagaataaa							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135152556	-	-	135152556	6	5	7	0	1	1	0	1	0	0	0	0	14254	986	34	0		0	SETX	9	135152556	Intron	DEL	G	TCGA-05-4390-01A-02D-1753-08	3890144	135152556	6060875	572	6796											
TMEM8C	389827	broad.mit.edu	37	chr9	136384205	136384205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgctcctcctggctacCcccccaccccccagccccca	4	26	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136384205	A	A	136384205	1	1	7	0	1	0	0	0	0	0	0	0	16339	638	22	2		2	TMEM8C	9	136384205	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1231649	136384205	4829226	573	6797											
FCN1	2219	broad.mit.edu	37	chr9	137805417	137805417	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtaccgaggtcagggtgtGatcagtcacctgtcgcacac	14	11	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137805417	T	T	137805417	1	4	7	0	1	0	0	0	0	0	0	0	5848	1305	45	3		3	FCN1	9	137805417	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1421212	137805417	3408014	574	6798											
ANAPC2	29882	broad.mit.edu	37	chr9	140075172	140075172	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcacggcgtcagggccCtgtcccgagagaggctgggc	17	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140075172	T	T	140075172	1	4	7	0	1	0	0	0	0	0	0	0	603	696	24	4		4	ANAPC2	9	140075172	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2269755	140075172	1138259	575	6799											
TAF3	83860	broad.mit.edu	37	chr10	7866336	7866336	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctttccagctgatgggGgttagtctacatgaactaga	12	7	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7866336	T	T	7866336	2	4	7	1	0	0	0	0	0	0	0	1	15644	1219	43	2		2	TAF3	10	7866336	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08		7866336	127668411	576	6800											
ACBD7	414149	broad.mit.edu	37	chr10	15063970	15063970	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaagtttcagactctctAtataaacaattccgattaca	5	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15063970	G	G	15063970	1	3	7	0	1	0	0	0	0	0	0	0	127	464	16	5		5	ACBD7	10	15063970	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	7197634	15063970	120470777	577	6801											
OLAH	55301	broad.mit.edu	37	chr10	15103797	15103797	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacatctcccagttagttGatgaagttgtttgtgctctg	10	7	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15103797	C	C	15103797	3	2	7	1	0	0	0	0	1	0	0	0	10946	1290	45	4	411	4	OLAH	10	15103797	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	39827	15103797	120430950	578	6802											
STAM	8027	broad.mit.edu	37	chr10	17737165	17737166	+	Missense_Mutation	DNP	TA	AT	AT													aggccgaaaagttcgtgctaTatatgactttgaagctgctg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	17737166	AT	AT	17737165	3	1	7	1	0	0	0	0	1	0	0	0	15366	1406	49	5	679	5	STAM	10	17737165	Missense_Mutation	DNP	TA	TCGA-05-4390-01A-02D-1753-08	2633368	17737165	117797582	579	6803											
NEBL	10529	broad.mit.edu	37	chr10	21158739	21158739	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagttctgcactgtacgtgTgggtgtcctgcacgtctttc	11	11	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21158739	A	A	21158739	3	1	7	1	0	0	0	0	1	0	0	0	10398	1696	59	5	2624	5	NEBL	10	21158739	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	3421574	21158739	114376008	580	6804											
C10orf140	387640	broad.mit.edu	37	chr10	21805106	21805106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgtaatctcagataccCtatcgttccttatctcagcg	7	11	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21805106	A	A	21805106	3	1	7	1	0	0	0	0	1	0	0	0	1606	681	24	2	1084	2	C10orf140	10	21805106	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	646367	21805106	113729641	581	6805											
SVIL	6840	broad.mit.edu	37	chr10	29813491	29813491	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attctgttccgggtagaaatCgcttttgagactggctggga	13	7	1	2	rs113842540	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29813491	A	A	29813491	2	1	7	1	0	0	0	0	0	0	0	1	15539	871	31	3		3	SVIL	10	29813491	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	8008385	29813491	105721256	582	6806											
MTPAP	55149	broad.mit.edu	37	chr10	30630353	30630353	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatggagacctccaccctTgaaaagcataaacgttaagt	7	10	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30630353	C	C	30630353	1	2	7	0	1	0	0	0	0	0	0	0	10050	1827	63	5		5	MTPAP	10	30630353	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	816862	30630353	104904394	583	6807											
ZNF438	220929	broad.mit.edu	37	chr10	31138643	31138643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagagctgtgaggtcctGcttggcaggctcctctggtg	15	9	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31138643	T	T	31138643	3	4	7	1	0	0	0	0	1	0	0	0	18037	1328	46	3	1803	3	ZNF438	10	31138643	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	508290	31138643	104396104	584	6808											
ANKRD30A	91074	broad.mit.edu	37	chr10	37506819	37506819	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaatcaggtaaatcaatctCtgataaaaattttatatttc	4	5	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37506819	T	T	37506819	1	4	7	0	1	0	0	0	0	0	0	0	658	928	32	4		4	ANKRD30A	10	37506819	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	6368176	37506819	98027928	585	6809											
GDF10	2662	broad.mit.edu	37	chr10	48428949	48428949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagtgctgtgcgtgggCgcgcggcggcctctcatcca	17	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48428949	A	A	48428949	3	1	7	1	0	0	0	0	1	0	0	0	6375	768	27	3	507	3	GDF10	10	48428949	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	10922130	48428949	87105798	586	6810											
CHAT	1103	broad.mit.edu	37	chr10	50856530	50856530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgactctcccatgatcgcCcactccctctttcctgttgc	6	18	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50856530	A	A	50856530	1	1	7	0	1	0	0	0	0	0	0	0	3344	638	22	2		2	CHAT	10	50856530	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2427581	50856530	84678217	587	6811											
OGDHL	55753	broad.mit.edu	37	chr10	50958893	50958893	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggggacccacctgtgtggCatccccaagatgacattctc	11	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50958893	G	G	50958893	3	3	7	1	0	0	0	0	1	0	0	0	10935	710	25	4	2212	4	OGDHL	10	50958893	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	102363	50958893	84575854	588	6812											
CSTF2T	23283	broad.mit.edu	37	chr10	53458690	53458690	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggccagagacagacacaGactgagatttgcctgggatc	13	10	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53458690	A	A	53458690	3	1	7	1	0	0	0	0	1	0	0	0	4019	942	33	4	1234	4	CSTF2T	10	53458690	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2499797	53458690	82076057	589	6813											
BICC1	80114	broad.mit.edu	37	chr10	60566396	60566396	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaaaggtatgtaatacaCtaataacttacacttgacta	4	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60566396	T	T	60566396	1	4	7	0	1	0	0	0	0	0	0	0	1433	580	20	4		4	BICC1	10	60566396	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	7107706	60566396	74968351	590	6814											
RHOBTB1	9886	broad.mit.edu	37	chr10	62631915	62631915	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgagaggtgaggagagctgGatgaatgggggcctcacaca	17	6	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62631915	C	C	62631915	1	2	7	0	1	0	0	0	0	0	0	0	13442	1189	41	4		4	RHOBTB1	10	62631915	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2065519	62631915	72902832	591	6815											
HERC4	26091	broad.mit.edu	37	chr10	69700696	69700696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttttttttccaactaacCtcccaacatcaggcattagt	4	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69700696	A	A	69700696	3	1	7	1	0	0	0	0	1	0	0	0	7127	695	24	2	669	2	HERC4	10	69700696	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	7068781	69700696	65834051	592	6816											
DDX50	79009	broad.mit.edu	37	chr10	70670281	70670281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgattctcctacctcagcctGctgagtagttgggattatag	10	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70670281	T	T	70670281	1	4	7	0	1	0	0	0	0	0	0	0	4401	1334	46	3		3	DDX50	10	70670281	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	969585	70670281	64864466	593	6817											
C10orf27	219793	broad.mit.edu	37	chr10	72539382	72539382	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggttccgattagactgtgGgtctccaatggggacagaga	16	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72539382	A	A	72539382	3	1	7	1	0	0	0	0	1	0	0	0	1611	1232	43	4	689	4	C10orf27	10	72539382	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1869101	72539382	62995365	594	6818											
SPOCK2	9806	broad.mit.edu	37	chr10	73824036	73824036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgatgggactgtcccCtggtgctggggggatgcact	16	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73824036	A	A	73824036	1	1	7	0	1	0	0	0	0	0	0	0	15198	696	24	2		2	SPOCK2	10	73824036	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1284654	73824036	61710711	595	6819											
KCNMA1	3778	broad.mit.edu	37	chr10	78646790	78646790	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctttgggttatttttcCcccagaatcataaataactt	5	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78646790	A	A	78646790	1	1	7	0	1	0	0	0	0	0	0	0	8143	638	22	2		2	KCNMA1	10	78646790	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	4822754	78646790	56887957	596	6820											
OPN4	94233	broad.mit.edu	37	chr10	88417664	88417664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtgcctgtttgcttgccCatgtgtgtgtgcatgtgtaa	12	9	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88417664	T	T	88417664	1	4	7	0	1	0	0	0	0	0	0	0	10976	609	21	4		4	OPN4	10	88417664	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	9770874	88417664	47117083	597	6821											
ANKRD1	27063	broad.mit.edu	37	chr10	92678499	92678499	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggctcctggcatacacaGcaacagctggggaaactgtt	11	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92678499	A	A	92678499	1	1	7	0	1	0	0	0	0	0	0	0	637	986	34	4		4	ANKRD1	10	92678499	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4260835	92678499	42856248	598	6822											
BTAF1	9044	broad.mit.edu	37	chr10	93776187	93776187	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactttctgaagaaactgaaAaaccaaagcttaaagctaca	5	9	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93776187	T	T	93776187	4	4	7	1	0	0	0	0	0	1	0	0	1545	15	1	5	4805	5	BTAF1	10	93776187	Nonsense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1097688	93776187	41758560	599	6823											
MYOF	26509	broad.mit.edu	37	chr10	95126072	95126072	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actattatcaagatgatgacGgagatataatatatttagca	7	4	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95126072	A	A	95126072	1	1	7	0	1	0	0	0	0	0	0	0	10183	1131	39	4		4	MYOF	10	95126072	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1349885	95126072	40408675	600	6824											
MYOF	26509	broad.mit.edu	37	chr10	95169426	95169426	+	Frame_Shift_Del	DEL	C	-	-													tccgacaccgtcccaactggCcccttgggcccagggcccct							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95169426	-	-	95169426	7	5	7	1	0	1	0	1	0	0	0	0	10183	726	26	0	5877	0	MYOF	10	95169426	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	43354	95169426	40365321	601	6825											
PLCE1	51196	broad.mit.edu	37	chr10	96018635	96018635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcatggtttcagatagCaacatgagttttgttgaatt	9	5	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96018635	A	A	96018635	3	1	7	1	0	0	0	0	1	0	0	0	12129	709	25	3	3961	3	PLCE1	10	96018635	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	849209	96018635	39516112	602	6826											
CYP2C9	1559	broad.mit.edu	37	chr10	96698261	96698261	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgaaggagaacaagaccaAaggacattttatttttatct	7	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96698261	G	G	96698261	1	3	7	0	1	0	0	0	0	0	0	0	4201	29	1	5		5	CYP2C9	10	96698261	5'Flank	SNP	A	TCGA-05-4390-01A-02D-1753-08	679626	96698261	38836486	603	6827											
DHDPSL	112817	broad.mit.edu	37	chr10	99359590	99359590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgagtggcagcagctccGgggctggggtcctctcctcc	15	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99359590	A	A	99359590	1	1	7	0	1	0	0	0	0	0	0	0	4520	1131	39	4		4	DHDPSL	10	99359590	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2661329	99359590	36175157	604	6828											
NOLC1	9221	broad.mit.edu	37	chr10	103919024	103919024	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagcagcagcagtagcagtGatgactcagaggaggagaag	16	7	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103919024	T	T	103919024	3	4	7	1	0	0	0	0	1	0	0	0	10624	1290	45	3	704	3	NOLC1	10	103919024	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4559434	103919024	31615723	605	6829											
NFKB2	4791	broad.mit.edu	37	chr10	104157797	104157797	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagacagcaggctctgtgCggggtggagatgaagtttat	15	6	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104157797	T	T	104157797	3	4	7	1	0	0	0	0	1	0	0	0	10471	759	27	4	751	4	NFKB2	10	104157797	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	238773	104157797	31376950	606	6830											
INA	9118	broad.mit.edu	37	chr10	105048089	105048089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaagttattgacttccTaagagtttttctctgttgaa	9	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105048089	A	A	105048089	1	1	7	0	1	0	0	0	0	0	0	0	7800	1537	53	5		5	INA	10	105048089	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	890292	105048089	30486658	607	6831											
SORCS3	22986	broad.mit.edu	37	chr10	106907476	106907476	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacatctcagacacgcgtggGatttacttcactctggccat	8	12	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106907476	A	A	106907476	2	1	7	1	0	0	0	0	0	0	0	1	15046	1161	41	4		4	SORCS3	10	106907476	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	1859387	106907476	28627271	608	6832											
SORCS1	114815	broad.mit.edu	37	chr10	108923816	108923816	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtgctggtcagtctcagctCctccatccggaagcgggtgg	15	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108923816	G	G	108923816	3	3	7	1	0	0	0	0	1	0	0	0	15044	864	30	4	3375	4	SORCS1	10	108923816	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2016340	108923816	26610931	609	6833											
GPAM	57678	broad.mit.edu	37	chr10	113917214	113917214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaactgcccagtggagCcaggacaaggcagtcctctt	10	13	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113917214	A	A	113917214	1	1	7	0	1	0	0	0	0	0	0	0	6653	754	26	3		3	GPAM	10	113917214	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4993398	113917214	21617533	610	6834											
HABP2	3026	broad.mit.edu	37	chr10	115338350	115338350	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggagtggcatgccaatggCtgttggttctcacattgcta	13	8	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115338350	T	T	115338350	1	4	7	0	1	0	0	0	0	0	0	0	7004	812	28	4		4	HABP2	10	115338350	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1421136	115338350	20196397	611	6835											
ATRNL1	26033	broad.mit.edu	37	chr10	117001387	117001387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaagaaagtgggtttgcCagataccttcattcagctgt	10	7	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117001387	A	A	117001387	2	1	7	1	0	0	0	0	0	0	0	1	1211	581	21	2		2	ATRNL1	10	117001387	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1663037	117001387	18533360	612	6836											
ATRNL1	26033	broad.mit.edu	37	chr10	117704361	117704361	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaaagctgttctatggccTtggattttatggaggcagat	12	5	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117704361	A	A	117704361	1	1	7	0	1	0	0	0	0	0	0	0	1211	1624	56	5		5	ATRNL1	10	117704361	3'UTR	SNP	T	TCGA-05-4390-01A-02D-1753-08	702974	117704361	17830386	613	6837											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199090	118199090	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttactttcgacttatagtcaGcaacatccttctcatacttt	3	11	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118199090	C	C	118199090	1	2	7	0	1	0	0	0	0	0	0	0	12247	986	34	4		4	PNLIPRP3	10	118199090	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	494729	118199090	17335657	614	6838											
HSPA12A	259217	broad.mit.edu	37	chr10	118460383	118460383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgggaggacatcccttccCcaccccaaggctggaggaag	13	13	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118460383	A	A	118460383	1	1	7	0	1	0	0	0	0	0	0	0	7473	638	22	2		2	HSPA12A	10	118460383	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	261293	118460383	17074364	615	6839											
VAX1	11023	broad.mit.edu	37	chr10	118896174	118896174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggaccccttggcatctgGggaaggggagatgtcagccg	17	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118896174	T	T	118896174	1	4	7	0	1	0	0	0	0	0	0	0	17261	1247	43	2		2	VAX1	10	118896174	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	435791	118896174	16638573	616	6840											
SLC18A2	6571	broad.mit.edu	37	chr10	119012799	119012799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaattttcagaaaagtcCaccaaacacttatctgtctg	5	9	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119012799	A	A	119012799	1	1	7	0	1	0	0	0	0	0	0	0	14539	609	21	2		2	SLC18A2	10	119012799	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	116625	119012799	16521948	617	6841											
SLC18A2	6571	broad.mit.edu	37	chr10	119017345	119017345	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatgggcatcgccatgctGgagccagccctgcccatctg	11	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119017345	T	T	119017345	2	4	7	1	0	0	0	0	0	0	0	1	14539	1335	47	2		2	SLC18A2	10	119017345	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	4546	119017345	16517402	618	6842											
PDZD8	118987	broad.mit.edu	37	chr10	119044378	119044378	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacaagaggaggtggcacCaccttctctggcttttcaac	9	12	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119044378	A	A	119044378	2	1	7	1	0	0	0	0	0	0	0	1	11799	581	21	2		2	PDZD8	10	119044378	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	27033	119044378	16490369	619	6843											
TACC2	10579	broad.mit.edu	37	chr10	123975001	123975001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcttgatggttttatgcCccccccgggggaggttttct	12	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123975001	A	A	123975001	1	1	7	0	1	0	0	0	0	0	0	0	15621	638	22	2		2	TACC2	10	123975001	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4930623	123975001	11559746	620	6844											
DMBT1	1755	broad.mit.edu	37	chr10	124377525	124377525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagggttcttgtgttcCcctgtaggatctgaatccac	11	9	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124377525	A	A	124377525	1	1	7	0	1	0	0	0	0	0	0	0	4617	638	22	2		2	DMBT1	10	124377525	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	402524	124377525	11157222	621	6845											
HMX2	3167	broad.mit.edu	37	chr10	124909093	124909093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgctcctcaggtaccccCaagggcagcggaggctcggg	14	15	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124909093	A	A	124909093	2	1	7	1	0	0	0	0	0	0	0	1	7314	581	21	2		2	HMX2	10	124909093	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	531568	124909093	10625654	622	6846											
PTPRE	5791	broad.mit.edu	37	chr10	129839291	129839291	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggctgcctcccctactacCtcctcctaagctcctgggac	7	19	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129839291	G	G	129839291	1	3	7	0	1	0	0	0	0	0	0	0	12908	696	24	4		4	PTPRE	10	129839291	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4930198	129839291	5695456	623	6847											
GLRX3	10539	broad.mit.edu	37	chr10	131943655	131943655	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttagattagggctgggtgcGgtagctcacacctgtaatcc	13	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131943655	A	A	131943655	1	1	7	0	1	0	0	0	0	0	0	0	6525	1131	39	4		4	GLRX3	10	131943655	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2104364	131943655	3591092	624	6848											
DPYSL4	10570	broad.mit.edu	37	chr10	134006275	134006275	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggctgcagatgcctgtccTgggcatgacaccggctgacg	14	12	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134006275	A	A	134006275	3	1	7	1	0	0	0	0	1	0	0	0	4789	1580	55	5	252	5	DPYSL4	10	134006275	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	2062620	134006275	1528472	625	6849											
KNDC1	85442	broad.mit.edu	37	chr10	134999589	134999589	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgccgacccccgaaggccCggagtctgagacgagccggg	15	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134999589	T	T	134999589	3	4	7	1	0	0	0	0	1	0	0	0	8497	652	23	4	759	4	KNDC1	10	134999589	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	993314	134999589	535158	626	6850											
FRG2B	441581	broad.mit.edu	37	chr10	135438789	135438789	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtctgcacctgggcacaCagaggcccccggagccgagt	14	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135438789	T	T	135438789	2	4	7	1	0	0	0	0	0	0	0	1	6107	465	17	4		4	FRG2B	10	135438789	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	439200	135438789	95958	627	6851											
MUC2	4583	broad.mit.edu	37	chr11	1104231	1104231	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcacctcccgccgggccCggcgctcccctaggcatctg	12	21	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1104231	T	T	1104231	3	4	7	1	0	0	0	0	1	0	0	0	10069	643	23	4	8608	4	MUC2	11	1104231	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08		1104231	133902285	628	6852											
MUC5B	727897	broad.mit.edu	37	chr11	1269245	1269245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggatccacggccacccCgtcctccaccccagggacca	8	21	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1269245	A	A	1269245	3	1	7	1	0	0	0	0	1	0	0	0	10073	652	23	1	11266	1	MUC5B	11	1269245	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	165014	1269245	133737271	629	6853											
BRSK2	9024	broad.mit.edu	37	chr11	1471120	1471120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagaggccccaaccctcCcagtcagcgtgtgccagggt	12	16	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1471120	A	A	1471120	1	1	7	0	1	0	0	0	0	0	0	0	1533	638	22	2		2	BRSK2	11	1471120	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	201875	1471120	133535396	630	6854											
LSP1	4046	broad.mit.edu	37	chr11	1905043	1905043	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctccagaactggagcacgTcagggccacagagaacctgg	13	12	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1905043	C	C	1905043	1	2	7	0	1	0	0	0	0	0	0	0	9150	1682	58	5		5	LSP1	11	1905043	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	433923	1905043	133101473	631	6855											
OR52K2	119774	broad.mit.edu	37	chr11	4471398	4471398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccctcatgtccacatcCtccttgccaatttctatctg	4	17	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4471398	A	A	4471398	3	1	7	1	0	0	0	0	1	0	0	0	11218	681	24	2	831	2	OR52K2	11	4471398	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2566355	4471398	130535118	632	6856											
TRIM68	55128	broad.mit.edu	37	chr11	4626875	4626875	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggaataattaatttctgGgggaaaaccaccttcctttt	7	8	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4626875	A	A	4626875	1	1	7	0	1	0	0	0	0	0	0	0	16666	1247	43	4		4	TRIM68	11	4626875	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	155477	4626875	130379641	633	6857											
OR51F2	119694	broad.mit.edu	37	chr11	4843368	4843368	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagagaggcggaaagcCttcaacacctgcacatccca	9	13	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4843368	A	A	4843368	2	1	7	1	0	0	0	0	0	0	0	1	11191	668	24	2		2	OR51F2	11	4843368	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	216493	4843368	130163148	634	6858											
OR52A4	390053	broad.mit.edu	37	chr11	5142424	5142424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagaggataacagatcgCtacacagcggtccagagcca	10	13	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5142424	A	A	5142424	3	1	7	1	0	0	0	0	1	0	0	0	11203	797	28	3	533	3	OR52A4	11	5142424	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	299056	5142424	129864092	635	6859											
OR52A5	390054	broad.mit.edu	37	chr11	5153746	5153746	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactaaaattagggaatttcCaatcacaccaataagataca	4	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5153746	T	T	5153746	3	4	7	1	0	0	0	0	1	0	0	0	11204	603	21	4	826	4	OR52A5	11	5153746	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	11322	5153746	129852770	636	6860											
OR51Q1	390061	broad.mit.edu	37	chr11	5444219	5444219	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggttggtgtatctatgacTcatcgctttgccaagcatgc	10	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5444219	A	A	5444219	2	1	7	1	0	0	0	0	0	0	0	1	11198	1538	54	5		5	OR51Q1	11	5444219	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	290473	5444219	129562297	637	6861											
OR56A1	120796	broad.mit.edu	37	chr11	6048764	6048764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcagagaggcctccagCtggatggtgatcaggagggt	18	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6048764	A	A	6048764	3	1	7	1	0	0	0	0	1	0	0	0	11227	796	28	3	789	3	OR56A1	11	6048764	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	604545	6048764	128957752	638	6862											
ZNF214	7761	broad.mit.edu	37	chr11	7022736	7022736	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaggaaaaattttcatattCtaagtatctgaatttttctt	5	4	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7022736	A	A	7022736	4	1	7	1	0	0	0	0	0	1	0	0	17896	922	32	3	1646	3	ZNF214	11	7022736	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	973972	7022736	127983780	639	6863											
RBMXL2	27288	broad.mit.edu	37	chr11	7111241	7111242	+	Missense_Mutation	DNP	GG	TT	TT													cggcgccgccccaggacgggGgacaccgccatcttacggag							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	7111242	TT	TT	7111241	3	4	7	1	0	0	0	0	1	0	0	0	13262	1232	43	2	892	2	RBMXL2	11	7111241	Missense_Mutation	DNP	GG	TCGA-05-4390-01A-02D-1753-08	88505	7111241	127895275	640	6864											
SYT9	143425	broad.mit.edu	37	chr11	7335047	7335047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggaagcttcacttctctGtgtacgactttgacaggttc	9	11	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7335047	T	T	7335047	3	4	7	1	0	0	0	0	1	0	0	0	15600	1377	48	3	929	3	SYT9	11	7335047	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	223806	7335047	127671469	641	6865											
OR5P2	120065	broad.mit.edu	37	chr11	7818288	7818288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacagaagatgaataggCcatgtcagcaaaagccaagt	11	7	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7818288	A	A	7818288	3	1	7	1	0	0	0	0	1	0	0	0	11272	739	26	3	770	3	OR5P2	11	7818288	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	483241	7818288	127188228	642	6866											
INSC	387755	broad.mit.edu	37	chr11	15197461	15197461	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccccctgcagctgctGctcaaacggggttgggtcat	14	12	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15197461	T	T	15197461	2	4	7	1	0	0	0	0	0	0	0	1	7834	1306	46	3		3	INSC	11	15197461	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	7379173	15197461	119809055	643	6867											
INSC	387755	broad.mit.edu	37	chr11	15261953	15261953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtcaggcctggctgggCcctgtcctgggcctgaggct	17	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15261953	A	A	15261953	1	1	7	0	1	0	0	0	0	0	0	0	7834	754	26	3		3	INSC	11	15261953	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	64492	15261953	119744563	644	6868											
IGSF22	283284	broad.mit.edu	37	chr11	18740135	18740135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaagagatattgccaaGgtggaccctggctaggcatc	14	8	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18740135	T	T	18740135	1	4	7	0	1	0	0	0	0	0	0	0	7670	1015	35	2		2	IGSF22	11	18740135	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3478182	18740135	116266381	645	6869											
SLC6A5	9152	broad.mit.edu	37	chr11	20668432	20668432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattggattccagcctaaCatcttctggaaagtctgctg	9	9	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20668432	A	A	20668432	3	1	7	1	0	0	0	0	1	0	0	0	14801	477	17	3	2076	3	SLC6A5	11	20668432	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1928297	20668432	114338084	646	6870											
NELL1	4745	broad.mit.edu	37	chr11	20950015	20950015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgctggccagtgctgtaaGgtctgccgacgtaagtactg	13	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20950015	T	T	20950015	3	4	7	1	0	0	0	0	1	0	0	0	10428	991	35	2	1021	2	NELL1	11	20950015	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	281583	20950015	114056501	647	6871											
NELL1	4745	broad.mit.edu	37	chr11	21555993	21555993	+	Frame_Shift_Del	DEL	C	-	-													gttaacctgccagggtggtaCcactgtgagtgcagaagcgg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21555993	-	-	21555993	7	5	7	1	0	1	0	1	0	0	0	0	10428	518	18	0	1781	0	NELL1	11	21555993	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	605978	21555993	113450523	648	6872											
LUZP2	338645	broad.mit.edu	37	chr11	24927594	24927594	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctctgtggcattcacgcaGaagaggtgagtaaatttttg	12	6	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24927594	T	T	24927594	4	4	7	1	0	0	0	0	0	1	0	0	9174	943	33	3	476	3	LUZP2	11	24927594	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3371601	24927594	110078922	649	6873											
PAX6	5080	broad.mit.edu	37	chr11	31822198	31822198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggggacaggcaaagggatGcacatatggagagctgcgtg	17	6	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31822198	T	T	31822198	1	4	7	0	1	0	0	0	0	0	0	0	11577	1334	46	3		3	PAX6	11	31822198	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	6894604	31822198	103184318	650	6874											
WT1	7490	broad.mit.edu	37	chr11	32414198	32414198	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagctgccagcaatgagaaGtgaacctacaaacctgtatg	9	10	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32414198	A	A	32414198	1	1	7	0	1	0	0	0	0	0	0	0	17535	1044	36	4		4	WT1	11	32414198	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	592000	32414198	102592318	651	6875											
CCDC73	493860	broad.mit.edu	37	chr11	32724364	32724364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccataatattcataggagGgggaggaaatgcaatattta	11	4	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32724364	T	T	32724364	1	4	7	0	1	0	0	0	0	0	0	0	2874	1247	43	2		2	CCDC73	11	32724364	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	310166	32724364	102282152	652	6876											
TCP11L1	55346	broad.mit.edu	37	chr11	33094290	33094290	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgttctgtactctaatgtTgcattggaaaatggctatat	8	7	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33094290	A	A	33094290	1	1	7	0	1	0	0	0	0	0	0	0	15836	1827	63	5		5	TCP11L1	11	33094290	3'UTR	SNP	T	TCGA-05-4390-01A-02D-1753-08	369926	33094290	101912226	653	6877											
RAG1	5896	broad.mit.edu	37	chr11	36597180	36597180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtctgtggaagaactgCgggatcgggtgaaaggggtc	18	5	1	3	rs121918572		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36597180	A	A	36597180	2	1	7	1	0	0	0	0	0	0	0	1	13111	759	27	3		3	RAG1	11	36597180	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	3502890	36597180	98409336	654	6878											
LRRC4C	57689	broad.mit.edu	37	chr11	40136851	40136851	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttagattgggaggagtgTtacaccgggcacaacaagct	12	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40136851	C	C	40136851	3	2	7	1	0	0	0	0	1	0	0	0	9095	1725	60	5	934	5	LRRC4C	11	40136851	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	3539671	40136851	94869665	655	6879											
SLC39A13	91252	broad.mit.edu	37	chr11	47380577	47380577	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctggacggtgggggaaggaGatcagagtcaggaagggcca	19	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47380577	A	A	47380577	1	1	7	0	1	0	0	0	0	0	0	0	14730	957	33	4		4	SLC39A13	11	47380577	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	7243726	47380577	87625939	656	6880											
MTCH2	23788	broad.mit.edu	37	chr11	47653150	47653150	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccacgtcaacctatctaaGtggtcaggagagatcaggtt	10	10	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47653150	A	A	47653150	1	1	7	0	1	0	0	0	0	0	0	0	10008	1044	36	4		4	MTCH2	11	47653150	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	272573	47653150	87353366	657	6881											
OR4C46	119749	broad.mit.edu	37	chr11	51515237	51515237	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaattcaaagttgtattaaTaaaaaatttttacaggtaat	4	2	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51515237	G	G	51515237	1	3	7	0	1	0	0	0	0	0	0	0	11145	1421	49	5		5	OR4C46	11	51515237	5'Flank	SNP	T	TCGA-05-4390-01A-02D-1753-08	3862087	51515237	83491279	658	6882											
OR4C46	119749	broad.mit.edu	37	chr11	51515433	51515433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaccatcactgccagccCatcactggggtcccccatgt	9	17	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515433	A	A	51515433	3	1	7	1	0	0	0	0	1	0	0	0	11145	594	21	2	154	2	OR4C46	11	51515433	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	196	51515433	83491083	659	6883											
TRIM48	79097	broad.mit.edu	37	chr11	55032363	55032363	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccaaaatgacatgctgctCtttcttcctcagaaacatga	5	13	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55032363	A	A	55032363	1	1	7	0	1	0	0	0	0	0	0	0	16648	928	32	3		3	TRIM48	11	55032363	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3516930	55032363	79974153	660	6884											
TRIM48	79097	broad.mit.edu	37	chr11	55038260	55038260	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattacactgcagtatgtcCcaagacctaccaaccatgta	5	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55038260	A	A	55038260	1	1	7	0	1	0	0	0	0	0	0	0	16648	638	22	2		2	TRIM48	11	55038260	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	5897	55038260	79968256	661	6885											
OR5T2	219464	broad.mit.edu	37	chr11	55999938	55999938	+	Frame_Shift_Del	DEL	C	-	-													gaccagctcgatagagcccaCaaagtagaagagtagaagct							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55999938	-	-	55999938	7	5	7	1	0	1	0	1	0	0	0	0	11276	478	17	0	354	0	OR5T2	11	55999938	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	961678	55999938	79006578	662	6886											
PRG3	10394	broad.mit.edu	37	chr11	57144461	57144461	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttccctcctcaggggccCcctatgtccccatctatggc	7	18	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57144461	G	G	57144461	1	3	7	0	1	0	0	0	0	0	0	0	12586	638	22	4		4	PRG3	11	57144461	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1144523	57144461	77862055	663	6887											
OR5B12	390191	broad.mit.edu	37	chr11	58206722	58206722	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctttgccttccctacagtCtttttaaaggcactcttaac	5	13	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58206722	A	A	58206722	3	1	7	1	0	0	0	0	1	0	0	0	11242	912	32	3	45	3	OR5B12	11	58206722	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1062261	58206722	76799794	664	6888											
MS4A6A	64231	broad.mit.edu	37	chr11	59947445	59947445	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagatctggatagtctgtggGaagagaaagtgagattgagg	16	2	2	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59947445	T	T	59947445	1	4	7	0	1	0	0	0	0	0	0	0	9958	1189	41	3		3	MS4A6A	11	59947445	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1740723	59947445	75059071	665	6889											
MS4A4A	51338	broad.mit.edu	37	chr11	60059882	60059882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcaaatctaggggaagaCcaatggtgttgcaaactcat	11	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60059882	A	A	60059882	1	1	7	0	1	0	0	0	0	0	0	0	9956	522	18	3		3	MS4A4A	11	60059882	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	112437	60059882	74946634	666	6890											
MS4A1	931	broad.mit.edu	37	chr11	60230298	60230298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgctccctggaaatgccCcatgtggttgaggaaacaga	11	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60230298	A	A	60230298	1	1	7	0	1	0	0	0	0	0	0	0	9948	638	22	2		2	MS4A1	11	60230298	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	170416	60230298	74776218	667	6891											
MS4A8B	83661	broad.mit.edu	37	chr11	60482612	60482612	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcaatcaagcaatgtgaGtcccagggttcctcagtggg	12	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60482612	C	C	60482612	1	2	7	0	1	0	0	0	0	0	0	0	9961	1044	36	4		4	MS4A8B	11	60482612	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	252314	60482612	74523904	668	6892											
CPSF7	79869	broad.mit.edu	37	chr11	61183865	61183865	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagggccgaaggaggacgaTtgaagtagggcagcacactg	17	7	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61183865	C	C	61183865	3	2	7	1	0	0	0	0	1	0	0	0	3862	1493	52	5	754	5	CPSF7	11	61183865	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	701253	61183865	73822651	669	6893											
DAGLA	747	broad.mit.edu	37	chr11	61498689	61498689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaacccctccctgccaGgggttgggtccgcaggctcc	12	18	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61498689	T	T	61498689	1	4	7	0	1	0	0	0	0	0	0	0	4259	1015	35	2		2	DAGLA	11	61498689	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	314824	61498689	73507827	670	6894											
PLCB3	5331	broad.mit.edu	37	chr11	64023163	64023163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacggggctgcccgcccctgGcttctcaccccacactcctc	8	21	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64023163	T	T	64023163	1	4	7	0	1	0	0	0	0	0	0	0	12124	1218	42	3		3	PLCB3	11	64023163	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2524474	64023163	70983353	671	6895											
SLC22A12	116085	broad.mit.edu	37	chr11	64366303	64366303	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttcagccatgcgggaGgagctgagcatgggccagcc	15	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64366303	A	A	64366303	2	1	7	1	0	0	0	0	0	0	0	1	14556	991	35	4		4	SLC22A12	11	64366303	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	343140	64366303	70640213	672	6896											
NRXN2	9379	broad.mit.edu	37	chr11	64390268	64390268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggagcggccccggcgcGtggtggtagtggccatggtg	22	9	0	0	rs144512935		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64390268	T	T	64390268	3	4	7	1	0	0	0	0	1	0	0	0	10761	1145	40	3	1020	3	NRXN2	11	64390268	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	23965	64390268	70616248	673	6897											
ACTN3	89	broad.mit.edu	37	chr11	66329720	66329720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcctgataaccactcaccCcctacagaagcagaatggga	8	13	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66329720	A	A	66329720	1	1	7	0	1	0	0	0	0	0	0	0	206	638	22	2		2	ACTN3	11	66329720	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1939452	66329720	68676796	674	6898											
SPTBN2	6712	broad.mit.edu	37	chr11	66472300	66472300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgggcgtgcggctcagtGtggggggcagggctgctgcc	20	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66472300	T	T	66472300	3	4	7	1	0	0	0	0	1	0	0	0	15238	1377	48	3	4821	3	SPTBN2	11	66472300	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	142580	66472300	68534216	675	6899											
DHCR7	1717	broad.mit.edu	37	chr11	71146589	71146589	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggccgccgccacaggcCaggcagtaggccaggctgcc	16	15	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71146589	A	A	71146589	2	1	7	1	0	0	0	0	0	0	0	1	4517	581	21	2		2	DHCR7	11	71146589	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	4674289	71146589	63859927	676	6900											
KRTAP5-11	440051	broad.mit.edu	37	chr11	71293805	71293805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccacagcccccacagcCagagccacagcccccactgc	9	21	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71293805	A	A	71293805	3	1	7	1	0	0	0	0	1	0	0	0	8632	594	21	2	395	2	KRTAP5-11	11	71293805	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	147216	71293805	63712711	677	6901											
PPME1	51400	broad.mit.edu	37	chr11	73933310	73933310	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcattgggaattgggtgaaAtttgttatcctagatgtgtc	11	4	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73933310	G	G	73933310	1	3	7	0	1	0	0	0	0	0	0	0	12448	116	4	5		5	PPME1	11	73933310	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2639505	73933310	61073206	678	6902											
USP35	57558	broad.mit.edu	37	chr11	77916913	77916913	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgttcccaatgaggaccGcatcaagcagctgctggggc	12	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77916913	A	A	77916913	3	1	7	1	0	0	0	0	1	0	0	0	17193	1087	38	4	1245	4	USP35	11	77916913	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3983603	77916913	57089603	679	6903											
RAB30	27314	broad.mit.edu	37	chr11	82698724	82698724	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcctcacaggtaatgtcaTaggtgaggatcaaggcattg	11	7	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82698724	C	C	82698724	3	2	7	1	0	0	0	0	1	0	0	0	13027	1406	49	5	353	5	RAB30	11	82698724	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	4781811	82698724	52307792	680	6904											
PICALM	8301	broad.mit.edu	37	chr11	85737453	85737453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaggtactgccatctcaCcaactctaattcgaaaatta	4	10	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85737453	A	A	85737453	1	1	7	0	1	0	0	0	0	0	0	0	11975	522	18	3		3	PICALM	11	85737453	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3038729	85737453	49269063	681	6905											
ME3	10873	broad.mit.edu	37	chr11	86160921	86160921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacctccaggtctccagaCtgacagtaccttgacaatga	8	12	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86160921	A	A	86160921	1	1	7	0	1	0	0	0	0	0	0	0	9512	580	20	3		3	ME3	11	86160921	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	423468	86160921	48845595	682	6906											
RAB38	23682	broad.mit.edu	37	chr11	87847406	87847406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatttaaatattccttcCtatatgctacatatgcatcc	2	10	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87847406	A	A	87847406	1	1	7	0	1	0	0	0	0	0	0	0	13036	696	24	2		2	RAB38	11	87847406	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1686485	87847406	47159110	683	6907											
FAT3	120114	broad.mit.edu	37	chr11	92086050	92086050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttatgttcacattgagCgcataaatgaacatgcccca	7	10	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92086050	A	A	92086050	3	1	7	1	0	0	0	0	1	0	0	0	5748	768	27	3	774	3	FAT3	11	92086050	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	4238644	92086050	42920466	684	6908											
GUCY1A2	2977	broad.mit.edu	37	chr11	106694736	106694736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttataaatttgttttcCgtgattccttcaaaagcttt	5	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106694736	A	A	106694736	1	1	7	0	1	0	0	0	0	0	0	0	6958	667	23	1		1	GUCY1A2	11	106694736	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	14608686	106694736	28311780	685	6909											
GUCY1A2	2977	broad.mit.edu	37	chr11	106849510	106849510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggagaaatttttgaaagCatctgcgaatgcaactcata	8	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106849510	A	A	106849510	1	1	7	0	1	0	0	0	0	0	0	0	6958	725	25	3		3	GUCY1A2	11	106849510	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	154774	106849510	28157006	686	6910											
ATM	472	broad.mit.edu	37	chr11	108122517	108122517	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatagataaagtctttgCccctccaatagcttgctttt	6	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108122517	T	T	108122517	1	4	7	0	1	0	0	0	0	0	0	0	1113	754	26	4		4	ATM	11	108122517	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1273007	108122517	26883999	687	6911											
ATM	472	broad.mit.edu	37	chr11	108183154	108183154	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagaagtcttgcatttgaaGaaggaagccagaatacaact	9	7	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108183154	T	T	108183154	4	4	7	1	0	0	0	0	0	1	0	0	1113	943	33	3	6089	3	ATM	11	108183154	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	60637	108183154	26823362	688	6912											
ATM	472	broad.mit.edu	37	chr11	108205768	108205768	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaatttcgcttagcaggaGgtgtaaatttaccaaaaata	8	6	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108205768	A	A	108205768	3	1	7	1	0	0	0	0	1	0	0	0	1113	1000	35	4	8297	4	ATM	11	108205768	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	22614	108205768	26800748	689	6913											
KDELC2	143888	broad.mit.edu	37	chr11	108351866	108351866	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtagacttttaatacaatTttatcgcttcatatccatag	5	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108351866	C	C	108351866	1	2	7	0	1	0	0	0	0	0	0	0	8188	1856	64	5		5	KDELC2	11	108351866	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	146098	108351866	26654650	690	6914											
ARHGAP20	57569	broad.mit.edu	37	chr11	110461533	110461533	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attaagaaagaaaagcatatCctatggggaagcaaaggaaa	10	4	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110461533	G	G	110461533	3	3	7	1	0	0	0	0	1	0	0	0	872	869	30	4	2451	4	ARHGAP20	11	110461533	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2109667	110461533	24544983	691	6915											
TTC12	54970	broad.mit.edu	37	chr11	113235676	113235676	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgtcttccctgctaaagacgGaccttttgcaggtcttgtta	9	11	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113235676	C	C	113235676	3	2	7	1	0	0	0	0	1	0	0	0	16805	1174	41	4	2014	4	TTC12	11	113235676	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2774143	113235676	21770840	692	6916											
REXO2	25996	broad.mit.edu	37	chr11	114320703	114320703	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccgtgagttgatgccaGttatcatgctgccactacat	9	10	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114320703	T	T	114320703	1	4	7	0	1	0	0	0	0	0	0	0	13350	1044	36	3		3	REXO2	11	114320703	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	1085027	114320703	20685813	693	6917											
APOA4	337	broad.mit.edu	37	chr11	116692768	116692768	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggagaggatgggtgtcacaGactaagttacgatgctgaat	14	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116692768	C	C	116692768	1	2	7	0	1	0	0	0	0	0	0	0	785	957	33	4		4	APOA4	11	116692768	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2372065	116692768	18313748	694	6918											
ABCG4	64137	broad.mit.edu	37	chr11	119029525	119029525	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccgggtgtgcctaagcaGcctgtgtcctcagtcccctt	12	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119029525	A	A	119029525	1	1	7	0	1	0	0	0	0	0	0	0	70	986	34	4		4	ABCG4	11	119029525	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2336757	119029525	15976991	695	6919											
TRIM29	23650	broad.mit.edu	37	chr11	119996462	119996462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccttgcacatcttctcaaCgtggcgcatgcatacattga	8	13	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119996462	A	A	119996462	3	1	7	1	0	0	0	0	1	0	0	0	16627	536	19	3	520	3	TRIM29	11	119996462	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	966937	119996462	15010054	696	6920											
SCN3B	55800	broad.mit.edu	37	chr11	123504806	123504806	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatccacatctgccttccCctcccatgttcctgtaggtc	6	18	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123504806	T	T	123504806	1	4	7	0	1	0	0	0	0	0	0	0	14032	638	22	4		4	SCN3B	11	123504806	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3508344	123504806	11501710	697	6921											
ROBO4	54538	broad.mit.edu	37	chr11	124756669	124756669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgggacgctgatgtaccCataggtggtggggggtgaag	19	5	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124756669	A	A	124756669	3	1	7	1	0	0	0	0	1	0	0	0	13627	594	21	2	550	2	ROBO4	11	124756669	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1251863	124756669	10249847	698	6922											
PKNOX2	63876	broad.mit.edu	37	chr11	125255501	125255501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaatgtgaacaggccacCcagggctctgagtgcatcac	12	11	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125255501	A	A	125255501	2	1	7	1	0	0	0	0	0	0	0	1	12078	610	22	2		2	PKNOX2	11	125255501	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	498832	125255501	9751015	699	6923											
ADIPOR2	79602	broad.mit.edu	37	chr12	1895226	1895226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggggctgcagtgaagaGgatgcactgtgatacctacc	16	9	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1895226	T	T	1895226	3	4	7	1	0	0	0	0	1	0	0	0	319	991	35	2	1175	2	ADIPOR2	12	1895226	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08		1895226	131956669	700	6924											
CACNA2D4	93589	broad.mit.edu	37	chr12	1994281	1994281	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagagaagcatcagggggttGagtgggccagtggagcttca	17	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1994281	T	T	1994281	1	4	7	0	1	0	0	0	0	0	0	0	2577	1305	45	3		3	CACNA2D4	12	1994281	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	99055	1994281	131857614	701	6925											
CACNA2D4	93589	broad.mit.edu	37	chr12	2016649	2016649	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgcactgccaaaatattgCcaggtcaacgttgggtctct	10	10	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2016649	T	T	2016649	4	4	7	1	0	0	0	0	0	1	0	0	2577	740	26	4	2807	4	CACNA2D4	12	2016649	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	22368	2016649	131835246	702	6926											
CACNA1C	775	broad.mit.edu	37	chr12	2613739	2613739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatgtcctctccacaacGcagccgagcaaggtctcagg	9	14	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2613739	T	T	2613739	1	4	7	0	1	0	0	0	0	0	0	0	2566	1102	38	3		3	CACNA1C	12	2613739	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	597090	2613739	131238156	703	6927											
FGF23	8074	broad.mit.edu	37	chr12	4479725	4479725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctccgagtcgtcctcggcGctccgggtgtgccgccgtgg	16	16	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4479725	T	T	4479725	3	4	7	1	0	0	0	0	1	0	0	0	5909	1078	38	3	219	3	FGF23	12	4479725	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1865986	4479725	129372170	704	6928											
CHD4	1108	broad.mit.edu	37	chr12	6702648	6702648	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaggagaactcattctctcgGatgatggcacggctgtcctt	11	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6702648	C	C	6702648	3	2	7	1	0	0	0	0	1	0	0	0	3358	1164	41	4	3390	4	CHD4	12	6702648	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2222923	6702648	127149247	705	6929											
PEX5	5830	broad.mit.edu	37	chr12	7354787	7354787	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggcatggttgagagtgcAcacctggaagtcctttccca	12	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7354787	T	T	7354787	1	4	7	0	1	0	0	0	0	0	0	0	11843	174	6	5		5	PEX5	12	7354787	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	652139	7354787	126497108	706	6930											
KLRF1	51348	broad.mit.edu	37	chr12	9997030	9997030	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctagattcttcataaagGgaccagctaaagaaaacagc	7	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9997030	T	T	9997030	4	4	7	1	0	0	0	0	0	1	0	0	8491	1233	43	2	626	2	KLRF1	12	9997030	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2642243	9997030	123854865	707	6931											
PRB4	5545	broad.mit.edu	37	chr12	11188920	11188920	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacataagtagactttaagtCccatggaaacaaaactgaat	7	7	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11188920	G	G	11188920	1	3	7	0	1	0	0	0	0	0	0	0	12551	870	30	4		4	PRB4	12	11188920	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1191890	11188920	122662975	708	6932											
GRIN2B	2904	broad.mit.edu	37	chr12	13724849	13724849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctctgtgctgccgttgGgcacggtcccaaagcggaaa	12	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13724849	T	T	13724849	3	4	7	1	0	0	0	0	1	0	0	0	6846	1232	43	2	2410	2	GRIN2B	12	13724849	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2535929	13724849	120127046	709	6933											
GUCY2C	2984	broad.mit.edu	37	chr12	14827805	14827805	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactggaaagttaaagggatAtcaggggaattgaagggatg	15	2	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14827805	G	G	14827805	1	3	7	0	1	0	0	0	0	0	0	0	6961	464	16	5		5	GUCY2C	12	14827805	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1102956	14827805	119024090	710	6934											
WBP11	51729	broad.mit.edu	37	chr12	14943703	14943703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaagaaattttaaaccCagtaaatggagttgattcat	7	6	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14943703	A	A	14943703	1	1	7	0	1	0	0	0	0	0	0	0	17385	609	21	2		2	WBP11	12	14943703	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	115898	14943703	118908192	711	6935											
SLCO1B3	28234	broad.mit.edu	37	chr12	21032388	21032388	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaatcataaccattcctaCggttgcaactggaatgtttt	8	8	1	0	rs138702607		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21032388	G	G	21032388	3	3	7	1	0	0	0	0	1	0	0	0	14838	536	19	4	1188	4	SLCO1B3	12	21032388	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	6088685	21032388	112819507	712	6936											
SLCO1B3	28234	broad.mit.edu	37	chr12	21036660	21036660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaattctttgagaatgCattttcttagaattattttg	5	3	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21036660	A	A	21036660	1	1	7	0	1	0	0	0	0	0	0	0	14838	725	25	3		3	SLCO1B3	12	21036660	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4272	21036660	112815235	713	6937											
SLCO1B3	28234	broad.mit.edu	37	chr12	21196529	21196529	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtaagtattttacattcaTtgtcaacttggagttgttaa	8	4	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21196529	A	A	21196529	1	1	7	0	1	0	0	0	0	0	0	0	14838	1508	52	5		5	SLCO1B3	12	21196529	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	159869	21196529	112655366	714	6938											
SLCO1B3	28234	broad.mit.edu	37	chr12	21229503	21229503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataattccacatatttggGgtaagttgtcataaatatat	6	4	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21229503	T	T	21229503	3	4	7	1	0	0	0	0	1	0	0	0	14838	1246	43	2		2	SLCO1B3	12	21229503	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	32974	21229503	112622392	715	6939											
KCNJ8	3764	broad.mit.edu	37	chr12	21919111	21919111	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgtcatacaggggactgCgcttgtcaatcacgtggcag	13	9	3	1	rs149127157		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21919111	T	T	21919111	3	4	7	1	0	0	0	0	1	0	0	0	8126	768	27	4	457	4	KCNJ8	12	21919111	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	689608	21919111	111932784	716	6940											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	7	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3479173	25398284	108453611	717	6941											
TMTC1	83857	broad.mit.edu	37	chr12	29669326	29669326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atagatggctgacaagaggcGatagcattcaaggcatccgg	13	8	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29669326	T	T	29669326	3	4	7	1	0	0	0	0	1	0	0	0	16383	1058	37	3	401	3	TMTC1	12	29669326	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4271042	29669326	104182569	718	6942											
TMTC1	83857	broad.mit.edu	37	chr12	29904683	29904683	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggagagtggcagccacccCaagctcctttgtgagggaac	14	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29904683	T	T	29904683	4	4	7	1	0	0	0	0	0	1	0	0	16383	595	21	4	1850	4	TMTC1	12	29904683	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	235357	29904683	103947212	719	6943											
IPO8	10526	broad.mit.edu	37	chr12	30816432	30816432	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttggctttaccttgtatctGgttagaaattaaagactgaa	8	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30816432	C	C	30816432	3	2	7	1	0	0	0	0	1	0	0	0	7868	1357	47	4	1576	4	IPO8	12	30816432	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	911749	30816432	103035463	720	6944											
DENND5B	160518	broad.mit.edu	37	chr12	31540729	31540729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggcgatccctacagacCcaaacagaaacaattcctga	7	13	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31540729	A	A	31540729	1	1	7	0	1	0	0	0	0	0	0	0	4477	638	22	2		2	DENND5B	12	31540729	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	724297	31540729	102311166	721	6945											
DENND5B	160518	broad.mit.edu	37	chr12	31576610	31576610	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccacaaagccgacttcccCtgaaagtacaagatgtgtaa	8	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31576610	A	A	31576610	5	1	7	1	0	0	0	0	0	0	1	0	4477	695	24	2	1477	2	DENND5B	12	31576610	Splice_Site	SNP	C	TCGA-05-4390-01A-02D-1753-08	35881	31576610	102275285	722	6946											
H3F3C	440093	broad.mit.edu	37	chr12	31944715	31944715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctctctctccccgtatcCggcgagccaactggatgtct	9	15	3	0	rs147097287		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31944715	A	A	31944715	3	1	7	1	0	0	0	0	1	0	0	0	7001	652	23	1	25	1	H3F3C	12	31944715	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	368105	31944715	101907180	723	6947											
DNM1L	10059	broad.mit.edu	37	chr12	32871528	32871528	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctaaatagttgtatttaatgGatcattttctttcttttctt	4	5	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32871528	A	A	32871528	1	1	7	0	1	0	0	0	0	0	0	0	4711	1189	41	4		4	DNM1L	12	32871528	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	926813	32871528	100980367	724	6948											
ABCD2	225	broad.mit.edu	37	chr12	39967542	39967542	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaaggtctgtgtgttataGacagtaaggaaattccagcc	12	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39967542	T	T	39967542	3	4	7	1	0	0	0	0	1	0	0	0	61	942	33	3	251	3	ABCD2	12	39967542	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	7096014	39967542	93884353	725	6949											
CNTN1	1272	broad.mit.edu	37	chr12	41337488	41337488	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgctttgcagaaaataacaGagggaaagctaatagcactg	10	6	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41337488	T	T	41337488	3	4	7	1	0	0	0	0	1	0	0	0	3672	942	33	3	1515	3	CNTN1	12	41337488	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1369946	41337488	92514407	726	6950											
CNTN1	1272	broad.mit.edu	37	chr12	41410654	41410654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatttcaagttaaagtcaaGgccttcaacaacaaaggaga	8	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41410654	T	T	41410654	3	4	7	1	0	0	0	0	1	0	0	0	3672	991	35	2	2425	2	CNTN1	12	41410654	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	73166	41410654	92441241	727	6951											
DBX2	440097	broad.mit.edu	37	chr12	45429822	45429822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaaagcagtggaggatGcagggcgccgacaggaccca	16	9	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45429822	T	T	45429822	3	4	7	1	0	0	0	0	1	0	0	0	4293	1319	46	3	552	3	DBX2	12	45429822	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4019168	45429822	88422073	728	6952											
C12orf41	54934	broad.mit.edu	37	chr12	49073534	49073534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacaggagtgtttcacCcacaggccctgggttggtct	13	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49073534	A	A	49073534	3	1	7	1	0	0	0	0	1	0	0	0	1700	623	22	2	1176	2	C12orf41	12	49073534	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3643712	49073534	84778361	729	6953											
KRT86	3892	broad.mit.edu	37	chr12	52646152	52646152	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcaggcaggccatgtcCtgcttggccttctgcagggc	13	13	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52646152	T	T	52646152	1	4	7	0	1	0	0	0	0	0	0	0	8571	696	24	4		4	KRT86	12	52646152	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3572618	52646152	81205743	730	6954											
KRT84	3890	broad.mit.edu	37	chr12	52778922	52778922	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcaatctccaggttgaGgggggtcagtaggctcttgt	17	7	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52778922	A	A	52778922	3	1	7	1	0	0	0	0	1	0	0	0	8569	1000	35	4	1390	4	KRT84	12	52778922	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	132770	52778922	81072973	731	6955											
KRT5	3852	broad.mit.edu	37	chr12	52908997	52908997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccactgccactgccatatCcagaggaaacactgcttgtg	9	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52908997	A	A	52908997	3	1	7	1	0	0	0	0	1	0	0	0	8550	855	30	3	274	3	KRT5	12	52908997	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	130075	52908997	80942898	732	6956											
KRT5	3852	broad.mit.edu	37	chr12	52910836	52910836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaaataaaacaaagtaGgtgtttcttttagaactcag	6	5	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52910836	T	T	52910836	1	4	7	0	1	0	0	0	0	0	0	0	8550	1015	35	2		2	KRT5	12	52910836	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1839	52910836	80941059	733	6957											
KRT2	3849	broad.mit.edu	37	chr12	53045306	53045306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctggaagtgaagtggcCtgagcatcagtgggagccgt	17	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53045306	A	A	53045306	1	1	7	0	1	0	0	0	0	0	0	0	8528	696	24	2		2	KRT2	12	53045306	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	134470	53045306	80806589	734	6958											
SOAT2	8435	broad.mit.edu	37	chr12	53514665	53514665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggagacaggatgttctacCgggtggggcctggacctagg	17	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53514665	A	A	53514665	2	1	7	1	0	0	0	0	0	0	0	1	15025	643	23	1		1	SOAT2	12	53514665	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	469359	53514665	80337230	735	6959											
GPR84	53831	broad.mit.edu	37	chr12	54757386	54757386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccggtgcgccagtgcaGgtggaggtaggtgtccacag	18	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54757386	T	T	54757386	3	4	7	1	0	0	0	0	1	0	0	0	6779	991	35	2	944	2	GPR84	12	54757386	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1242721	54757386	79094509	736	6960											
ERBB3	2065	broad.mit.edu	37	chr12	56495883	56495883	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcatttaatggcagctaGtgcctttagagggtaccgtc	13	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56495883	T	T	56495883	1	4	7	0	1	0	0	0	0	0	0	0	5250	1044	36	3		3	ERBB3	12	56495883	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	1738497	56495883	77356012	737	6961											
STAT2	6773	broad.mit.edu	37	chr12	56743829	56743829	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggacagagtgagactccgTctcaaaaaaataaaaatagt	10	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56743829	A	A	56743829	1	1	7	0	1	0	0	0	0	0	0	0	15383	1682	58	5		5	STAT2	12	56743829	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	247946	56743829	77108066	738	6962											
TIMELESS	8914	broad.mit.edu	37	chr12	56814763	56814763	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccttcctgatgcaggctTtgaccaaggttttcatttga	8	10	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56814763	A	A	56814763	3	1	7	1	0	0	0	0	1	0	0	0	16027	1838	64	5	626	5	TIMELESS	12	56814763	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	70934	56814763	77037132	739	6963											
TAC3	6866	broad.mit.edu	37	chr12	57406247	57406247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggagagtctagggtaaaGcgaacagtgtaagtaagagg	16	3	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57406247	T	T	57406247	1	4	7	0	1	0	0	0	0	0	0	0	15618	986	34	3		3	TAC3	12	57406247	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	591484	57406247	76445648	740	6964											
MYO1A	4640	broad.mit.edu	37	chr12	57435356	57435356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccttctggagcggatgGggttggagtagggggcaaac	19	6	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57435356	T	T	57435356	1	4	7	0	1	0	0	0	0	0	0	0	10162	1247	43	2		2	MYO1A	12	57435356	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	29109	57435356	76416539	741	6965											
PTPRB	5787	broad.mit.edu	37	chr12	70974892	70974892	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaccacggagtacaggctGccggacttgagagagtggaa	14	10	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70974892	A	A	70974892	2	1	7	1	0	0	0	0	0	0	0	1	12904	1306	46	4		4	PTPRB	12	70974892	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	13539536	70974892	62877003	742	6966											
PTPRB	5787	broad.mit.edu	37	chr12	70983910	70983910	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagaatcattgaagagtagGatccgatactgctcccagtc	9	10	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70983910	T	T	70983910	2	4	7	1	0	0	0	0	0	0	0	1	12904	1164	41	3		3	PTPRB	12	70983910	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	9018	70983910	62867985	743	6967											
NAV3	89795	broad.mit.edu	37	chr12	78579461	78579461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatagtctccataagcaagGgctatggtcgagcaaaggta	11	7	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78579461	T	T	78579461	3	4	7	1	0	0	0	0	1	0	0	0	10279	1232	43	2	5825	2	NAV3	12	78579461	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	7595551	78579461	55272434	744	6968											
NAV3	89795	broad.mit.edu	37	chr12	78592349	78592349	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaattaatcacttttacctCcagtaaattaaaattttcta	2	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78592349	A	A	78592349	1	1	7	0	1	0	0	0	0	0	0	0	10279	870	30	3		3	NAV3	12	78592349	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	12888	78592349	55259546	745	6969											
MYF6	4618	broad.mit.edu	37	chr12	81102680	81102680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgcctttcttccatcgtgGacagtatttcctcggaggaa	10	10	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81102680	T	T	81102680	3	4	7	1	0	0	0	0	1	0	0	0	10122	1174	41	3	680	3	MYF6	12	81102680	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2510331	81102680	52749215	746	6970											
LUM	4060	broad.mit.edu	37	chr12	91502248	91502248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagcatcctctttcagcCgattgtgctggagatggatg	11	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91502248	A	A	91502248	3	1	7	1	0	0	0	0	1	0	0	0	9172	652	23	1	515	1	LUM	12	91502248	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	10399568	91502248	42349647	747	6971											
PLEKHG7	440107	broad.mit.edu	37	chr12	93131352	93131352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattaatttgtttttttgGgcacttgttttcctcttctg	6	6	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93131352	T	T	93131352	1	4	7	0	1	0	0	0	0	0	0	0	12170	1247	43	2		2	PLEKHG7	12	93131352	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1629104	93131352	40720543	748	6972											
PLXNC1	10154	broad.mit.edu	37	chr12	94641610	94641610	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttaagttgctcaggtcacTtagctcttagagatcacagc	9	9	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94641610	A	A	94641610	1	1	7	0	1	0	0	0	0	0	0	0	12221	1624	56	5		5	PLXNC1	12	94641610	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	1510258	94641610	39210285	749	6973											
FAM71C	196472	broad.mit.edu	37	chr12	100042084	100042084	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatattcaggtatgcaccCatgtttgagagcgactttat	8	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100042084	A	A	100042084	2	1	7	1	0	0	0	0	0	0	0	1	5660	581	21	2		2	FAM71C	12	100042084	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	5400474	100042084	33809811	750	6974											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100451549	100451549	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacaaaattattagaaaatTattacatatagagaaaagaa	4	2	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100451549	A	A	100451549	1	1	7	0	1	0	0	0	0	0	0	0	17095	1769	61	5		5	UHRF1BP1L	12	100451549	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	409465	100451549	33400346	751	6975											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100453575	100453575	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catacatatacgcacaaatcAtaaaataaaaagaacaaaat	2	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100453575	C	C	100453575	1	2	7	0	1	0	0	0	0	0	0	0	17095	232	8	5		5	UHRF1BP1L	12	100453575	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2026	100453575	33398320	752	6976											
GOLGA2B	55592	broad.mit.edu	37	chr12	100551393	100551393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggggctggggctgctgcCtcaggttccttctgggccga	16	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100551393	A	A	100551393	3	1	7	1	0	0	0	0	1	0	0	0	6617	681	24	2	243	2	GOLGA2B	12	100551393	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	97818	100551393	33300502	753	6977											
UTP20	27340	broad.mit.edu	37	chr12	101689353	101689353	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggccattctggccaagctCattctgaacaaagcagcacc	8	14	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101689353	A	A	101689353	2	1	7	1	0	0	0	0	0	0	0	1	17226	813	29	3		3	UTP20	12	101689353	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1137960	101689353	32162542	754	6978											
SYCP3	50511	broad.mit.edu	37	chr12	102131607	102131607	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacatcttcctctgatccaCtcagatctttcttatcttca	2	13	7	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102131607	G	G	102131607	3	3	7	1	0	0	0	0	1	0	0	0	15553	565	20	4	635	4	SYCP3	12	102131607	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	442254	102131607	31720288	755	6979											
C12orf42	374470	broad.mit.edu	37	chr12	103696403	103696403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggaccacaccgcacccCcgcgacaactggacgtctga	11	17	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103696403	A	A	103696403	1	1	7	0	1	0	0	0	0	0	0	0	1701	638	22	2		2	C12orf42	12	103696403	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1564796	103696403	30155492	756	6980											
HCFC2	29915	broad.mit.edu	37	chr12	104480726	104480726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttgagggctatcttttgCagttgagtacagacttgcca	11	8	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104480726	A	A	104480726	3	1	7	1	0	0	0	0	1	0	0	0	7059	711	25	3	1195	3	HCFC2	12	104480726	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	784323	104480726	29371169	757	6981											
KIAA1033	23325	broad.mit.edu	37	chr12	105514228	105514228	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactagagccttaataaagaTaaatattaaaattccaagat	4	5	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105514228	G	G	105514228	1	3	7	0	1	0	0	0	0	0	0	0	8276	1421	49	5		5	KIAA1033	12	105514228	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	1033502	105514228	28337667	758	6982											
BTBD11	121551	broad.mit.edu	37	chr12	108010922	108010922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagcatggcgaggagaaCtactcggaaacacccctcca	12	12	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108010922	A	A	108010922	3	1	7	1	0	0	0	0	1	0	0	0	1548	564	20	3	2193	3	BTBD11	12	108010922	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2496694	108010922	25840973	759	6983											
SSH1	54434	broad.mit.edu	37	chr12	109205139	109205139	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagacatgtggagtcagcGtctacccacctacgtgtaca	10	11	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109205139	A	A	109205139	1	1	7	0	1	0	0	0	0	0	0	0	15302	1160	40	4		4	SSH1	12	109205139	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1194217	109205139	24646756	760	6984											
CUX2	23316	broad.mit.edu	37	chr12	111729244	111729244	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgtgcctgtgtttgaggcGgcacgcagcctagacgacag	14	13	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111729244	A	A	111729244	2	1	7	1	0	0	0	0	0	0	0	1	4098	1103	39	4		4	CUX2	12	111729244	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	2524105	111729244	22122651	761	6985											
NAA25	80018	broad.mit.edu	37	chr12	112516017	112516017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttccctctgatgacatcCaaggcctcctggtactttcc	6	14	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112516017	A	A	112516017	3	1	7	1	0	0	0	0	1	0	0	0	10215	593	21	2	2351	2	NAA25	12	112516017	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	786773	112516017	21335878	762	6986											
C12orf51	283450	broad.mit.edu	37	chr12	112681285	112681285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagtgtttccccgccgccaCcttgtctgtgcagccaaaag	10	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112681285	A	A	112681285	3	1	7	1	0	0	0	0	1	0	0	0	1709	506	18	3	8606	3	C12orf51	12	112681285	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	165268	112681285	21170610	763	6987											
NOS1	4842	broad.mit.edu	37	chr12	117681107	117681107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgggaggtaccttgtGtgagttctggagcttcggcc	18	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117681107	T	T	117681107	3	4	7	1	0	0	0	0	1	0	0	0	10636	1377	48	3	1391	3	NOS1	12	117681107	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4999822	117681107	16170788	764	6988											
KSR2	283455	broad.mit.edu	37	chr12	118105261	118105261	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagcgttcccagtgcagCccggcagggtgacttacttg	14	12	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118105261	G	G	118105261	1	3	7	0	1	0	0	0	0	0	0	0	8654	754	26	4		4	KSR2	12	118105261	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	424154	118105261	15746634	765	6989											
HNF1A	6927	broad.mit.edu	37	chr12	121434314	121434314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtggggaccccggccCcccggacacagcttggcttc	13	18	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121434314	A	A	121434314	1	1	7	0	1	0	0	0	0	0	0	0	7318	638	22	2		2	HNF1A	12	121434314	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3329053	121434314	12417581	766	6990											
KDM2B	84678	broad.mit.edu	37	chr12	122018776	122018777	+	Missense_Mutation	DNP	GG	AA	AA													ctgcatgtctttttcgtgggGggtgatcctctgcagatccc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	122018777	AA	AA	122018776	3	1	7	1	0	0	0	0	1	0	0	0	8195	1232	43	4	4150	4	KDM2B	12	122018776	Missense_Mutation	DNP	GG	TCGA-05-4390-01A-02D-1753-08	584462	122018776	11833119	767	6991											
RILPL1	353116	broad.mit.edu	37	chr12	123983919	123983919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctggtctctggctggcaCctactggctgggagggtgga	18	9	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123983919	A	A	123983919	1	1	7	0	1	0	0	0	0	0	0	0	13470	522	18	3		3	RILPL1	12	123983919	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1965143	123983919	9867976	768	6992											
GALNT9	50614	broad.mit.edu	37	chr12	132685783	132685783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggccagcctctcagacacGtccccgaagtccacccctgg	10	18	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132685783	T	T	132685783	3	4	7	1	0	0	0	0	1	0	0	0	6282	1136	40	3	540	3	GALNT9	12	132685783	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	8701864	132685783	1166112	769	6993											
RNF17	56163	broad.mit.edu	37	chr13	25416251	25416251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaaatgactactactaGtattaatgaccagctagtta	6	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25416251	T	T	25416251	3	4	7	1	0	0	0	0	1	0	0	0	13572	1029	36	3	2629	3	RNF17	13	25416251	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08		25416251	89753627	770	6994											
PABPC3	5042	broad.mit.edu	37	chr13	25671243	25671243	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttatgtgaaaaatcttgatGatggtattgatgatgaacgt	10	2	1	6			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25671243	A	A	25671243	3	1	7	1	0	0	0	0	1	0	0	0	11459	1290	45	4	909	4	PABPC3	13	25671243	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	254992	25671243	89498635	771	6995											
WASF3	10810	broad.mit.edu	37	chr13	27255238	27255238	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttacccggctactcccaAccattctctgcacccccagc	4	21	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27255238	G	G	27255238	3	3	7	1	0	0	0	0	1	0	0	0	17381	43	2	5	786	5	WASF3	13	27255238	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1583995	27255238	87914640	772	6996											
GPR12	2835	broad.mit.edu	37	chr13	27333098	27333098	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatggaattgtaggtggcGggcaggagggtggcgtaggt	21	3	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27333098	T	T	27333098	2	4	7	1	0	0	0	0	0	0	0	1	6700	1103	39	1		1	GPR12	13	27333098	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	77860	27333098	87836780	773	6997											
FLT1	2321	broad.mit.edu	37	chr13	28964084	28964084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtgatggccattttttgCttgctaatactgtagtgcat	9	6	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28964084	A	A	28964084	3	1	7	1	0	0	0	0	1	0	0	0	5999	796	28	3	2455	3	FLT1	13	28964084	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1630986	28964084	86205794	774	6998											
B3GALTL	145173	broad.mit.edu	37	chr13	31834963	31834963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctagaaatatttaatctGtgctaataactctttatcac	3	8	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31834963	T	T	31834963	1	4	7	0	1	0	0	0	0	0	0	0	1257	1392	48	3		3	B3GALTL	13	31834963	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2870879	31834963	83334915	775	6999											
FRY	10129	broad.mit.edu	37	chr13	32745165	32745165	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaggctctctattcatatgGatgatgaattgcgacatatt	8	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32745165	A	A	32745165	3	1	7	1	0	0	0	0	1	0	0	0	6123	1174	41	4	1979	4	FRY	13	32745165	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	910202	32745165	82424713	776	7000											
KL	9365	broad.mit.edu	37	chr13	33635064	33635064	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgaaccacaccatcctGcagtactatcgctgcatggc	9	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33635064	A	A	33635064	2	1	7	1	0	0	0	0	0	0	0	1	8402	1306	46	4		4	KL	13	33635064	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	889899	33635064	81534814	777	7001											
DCLK1	9201	broad.mit.edu	37	chr13	36686012	36686012	+	Frame_Shift_Del	DEL	C	-	-													aatatgtctcttacctgtttCccatccaacgtgtacaggcg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36686012	-	-	36686012	7	5	7	1	0	1	0	1	0	0	0	0	4324	842	30	0	1536	0	DCLK1	13	36686012	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	3050948	36686012	78483866	778	7002											
C13orf23	80209	broad.mit.edu	37	chr13	39596315	39596315	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaagactatgaaaactgtcCcacattaccaaggattcact	5	11	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39596315	G	G	39596315	1	3	7	0	1	0	0	0	0	0	0	0	1734	638	22	4		4	C13orf23	13	39596315	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2910303	39596315	75573563	779	7003											
AKAP11	11215	broad.mit.edu	37	chr13	42869861	42869861	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggttttaatgaagagacaGatgctgctcatatacaggta	11	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42869861	T	T	42869861	3	4	7	1	0	0	0	0	1	0	0	0	447	942	33	3	209	3	AKAP11	13	42869861	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3273546	42869861	72300017	780	7004											
ZC3H13	23091	broad.mit.edu	37	chr13	46559672	46559672	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaccgagaatctctgggatCacggctctctttggtatctc	11	11	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46559672	T	T	46559672	3	4	7	1	0	0	0	0	1	0	0	0	17691	826	29	4	3246	4	ZC3H13	13	46559672	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3689811	46559672	68610206	781	7005											
VPS36	51028	broad.mit.edu	37	chr13	53008884	53008884	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttaatgaagatgtaagTacagagttgaaaatactgga	9	3	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53008884	C	C	53008884	1	2	7	0	1	0	0	0	0	0	0	0	17331	1653	57	5		5	VPS36	13	53008884	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	6449212	53008884	62160994	782	7006											
PCDH17	27253	broad.mit.edu	37	chr13	58207805	58207805	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtcatcgccctggtgcgGgtcactgaccgggactctgg	14	14	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207805	T	T	58207805	2	4	7	1	0	0	0	0	0	0	0	1	11606	1219	43	2		2	PCDH17	13	58207805	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	5198921	58207805	56962073	783	7007											
PCDH9	5101	broad.mit.edu	37	chr13	67800609	67800609	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacttttgcagtagaggaaCgaggtggttgtcctccatca	11	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67800609	G	G	67800609	3	3	7	1	0	0	0	0	1	0	0	0	11612	536	19	4	1765	4	PCDH9	13	67800609	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	9592804	67800609	47369269	784	7008											
KLHL1	57626	broad.mit.edu	37	chr13	70456619	70456619	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttctgataacttccatTatgttttcctgcagggagaa	8	7	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70456619	A	A	70456619	2	1	7	1	0	0	0	0	0	0	0	1	8436	1744	61	5		5	KLHL1	13	70456619	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	2656010	70456619	44713259	785	7009											
LMO7	4008	broad.mit.edu	37	chr13	76397701	76397701	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgatgttttcttatttagAtggatgatgcttggaagtat	10	2	1	3	rs151245949		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76397701	G	G	76397701	3	3	7	1	0	0	0	0	1	0	0	0	8929	347	12	5	2859	5	LMO7	13	76397701	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	5941082	76397701	38772177	786	7010											
SLITRK1	114798	broad.mit.edu	37	chr13	84455264	84455264	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccagatcgtccagccccaGaaaagtctgctttcgaaaag	8	12	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84455264	A	A	84455264	2	1	7	1	0	0	0	0	0	0	0	1	14856	933	33	4		4	SLITRK1	13	84455264	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	8057563	84455264	30714614	787	7011											
GPC6	10082	broad.mit.edu	37	chr13	94482692	94482704	+	Frame_Shift_Del	DEL	ACGTGCCCCGGAA	-	-													ccagctcaagccatttggagAcgtgccccggaaactgaaga					rs143089233		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94482704	-	-	94482692	7	5	7	1	0	1	0	1	0	0	0	0	6667	275	10	0	615	0	GPC6	13	94482692	Frame_Shift_Del	DEL	ACGTGCCCCGGAA	TCGA-05-4390-01A-02D-1753-08	10027428	94482692	20687186	788	7012											
GPC6	10082	broad.mit.edu	37	chr13	94958471	94958471	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctggaaaagtttgttatAagagtcatctcatgcttata	7	5	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94958471	T	T	94958471	1	4	7	0	1	0	0	0	0	0	0	0	6667	377	13	5		5	GPC6	13	94958471	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	475779	94958471	20211407	789	7013											
UGGT2	55757	broad.mit.edu	37	chr13	96622634	96622634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtatcttcattaatagCaggaaaaatatattaaactc	5	5	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96622634	A	A	96622634	1	1	7	0	1	0	0	0	0	0	0	0	17068	725	25	3		3	UGGT2	13	96622634	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1664163	96622634	18547244	790	7014											
HS6ST3	266722	broad.mit.edu	37	chr13	97226626	97226626	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatccaattaccagtgaattTggaaaaatggtcaaactcac	7	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97226626	C	C	97226626	1	2	7	0	1	0	0	0	0	0	0	0	7439	1827	63	5		5	HS6ST3	13	97226626	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	603992	97226626	17943252	791	7015											
IPO5	3843	broad.mit.edu	37	chr13	98658478	98658478	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaatttgtcccctactAtgatttatttatgccatcac	4	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98658478	T	T	98658478	3	4	7	1	0	0	0	0	1	0	0	0	7866	449	16	5	1704	5	IPO5	13	98658478	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1431852	98658478	16511400	792	7016											
FARP1	10160	broad.mit.edu	37	chr13	99092992	99092992	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagcgcctcgcgcacatcgCtggagcgccaggccccgcac	13	18	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99092992	G	G	99092992	3	3	7	1	0	0	0	0	1	0	0	0	5733	796	28	4	3011	4	FARP1	13	99092992	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	434514	99092992	16076886	793	7017											
DOCK9	23348	broad.mit.edu	37	chr13	99554495	99554495	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggtgcatttaggtagcaTgcaaagtgagtctgagtagt	13	4	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99554495	A	A	99554495	1	1	7	0	1	0	0	0	0	0	0	0	4734	1479	51	5		5	DOCK9	13	99554495	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	461503	99554495	15615383	794	7018											
PCCA	5095	broad.mit.edu	37	chr13	101121723	101121723	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacattccttggcctttcTtgtacgtatcaaaaggattg	7	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101121723	C	C	101121723	1	2	7	0	1	0	0	0	0	0	0	0	11598	1624	56	5		5	PCCA	13	101121723	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	1567228	101121723	14048155	795	7019											
SLC10A2	6555	broad.mit.edu	37	chr13	103718088	103718088	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctagaaggcacgggaatgcAtttattctctcctgtttgat	10	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103718088	G	G	103718088	1	3	7	0	1	0	0	0	0	0	0	0	14487	232	8	5		5	SLC10A2	13	103718088	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2596365	103718088	11451790	796	7020											
DAOA	267012	broad.mit.edu	37	chr13	106119586	106119586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttgacatattttcaagCgtagacaaacttcaattaat	4	7	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106119586	A	A	106119586	1	1	7	0	1	0	0	0	0	0	0	0	4265	783	27	3		3	DAOA	13	106119586	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2401498	106119586	9050292	797	7021											
MYO16	23026	broad.mit.edu	37	chr13	109518439	109518439	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttattatttatatttcatAcactggtttttaaattgtat	3	4	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109518439	T	T	109518439	1	4	7	0	1	0	0	0	0	0	0	0	10158	406	14	5		5	MYO16	13	109518439	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	3398853	109518439	5651439	798	7022											
MYO16	23026	broad.mit.edu	37	chr13	109699389	109699389	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttaaaatgccatgcatcCgttatttctttatctctgaa	6	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109699389	T	T	109699389	1	4	7	0	1	0	0	0	0	0	0	0	10158	667	23	4		4	MYO16	13	109699389	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	180950	109699389	5470489	799	7023											
F10	2159	broad.mit.edu	37	chr13	113803179	113803179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaaagcaacggatgtgCgagagcatgtccctggctga	12	9	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113803179	A	A	113803179	1	1	7	0	1	0	0	0	0	0	0	0	5379	783	27	3		3	F10	13	113803179	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4103790	113803179	1366699	800	7024											
ZNF828	283489	broad.mit.edu	37	chr13	115090570	115090570	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcccccagtgtctccagAgcttcgcaaacccggcccac	8	18	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115090570	C	C	115090570	3	2	7	1	0	0	0	0	1	0	0	0	18310	304	11	5	1255	5	ZNF828	13	115090570	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1287391	115090570	79308	801	7025											
OR4N5	390437	broad.mit.edu	37	chr14	20612049	20612049	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattttcaccataaagtcagAccctgggctcacagcccccc	6	17	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20612049	T	T	20612049	3	4	7	1	0	0	0	0	1	0	0	0	11173	275	10	5	157	5	OR4N5	14	20612049	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08		20612049	86737491	802	7026											
TEP1	7011	broad.mit.edu	37	chr14	20857351	20857351	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagataatctcctaaaaaCtttccaacaaagtatccaac	3	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20857351	T	T	20857351	1	4	7	0	1	0	0	0	0	0	0	0	15881	580	20	4		4	TEP1	14	20857351	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	245302	20857351	86492189	803	7027											
TEP1	7011	broad.mit.edu	37	chr14	20869772	20869772	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccccaagtcccacaggggtCctttcatccatgaccatggg	9	15	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20869772	A	A	20869772	1	1	7	0	1	0	0	0	0	0	0	0	15881	870	30	3		3	TEP1	14	20869772	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	12421	20869772	86479768	804	7028											
PNP	4860	broad.mit.edu	37	chr14	20943064	20943064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccatatcaacctacctGgtttcagtggtcagaaccct	8	12	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20943064	T	T	20943064	3	4	7	1	0	0	0	0	1	0	0	0	12258	1348	47	2	432	2	PNP	14	20943064	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	73292	20943064	86406476	805	7029											
RNASE2	6036	broad.mit.edu	37	chr14	21388012	21388013	+	Intron	INS	-	A	A													caaaatacttttcttcttgcINSaacttttgctaatgtagtta							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21388013	A	A	21388012	6	5	7	0	1	1	1	0	0	0	0	0	13515	725	25	0		0	RNASE2	14	21388012	Intron	INS	-	TCGA-05-4390-01A-02D-1753-08	444948	21388012	85961528	806	7030											
MYH7	4625	broad.mit.edu	37	chr14	23888295	23888295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaactgttggtccacagCcagccttattgctgggaagg	14	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23888295	A	A	23888295	1	1	7	0	1	0	0	0	0	0	0	0	10133	754	26	3		3	MYH7	14	23888295	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2500283	23888295	83461245	807	7031											
AKAP6	9472	broad.mit.edu	37	chr14	33147707	33147708	+	Intron	INS	-	T	T													gttttattctcactaatctaINSttttttcaatgattttccac							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33147708	T	T	33147707	6	5	7	0	1	1	1	0	0	0	0	0	455	464	16	0		0	AKAP6	14	33147707	Intron	INS	-	TCGA-05-4390-01A-02D-1753-08	9259412	33147707	74201833	808	7032											
NPAS3	64067	broad.mit.edu	37	chr14	34204396	34204396	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaagatctaaatcgtgtgTgtctgtatttttgtattcct	8	6	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34204396	A	A	34204396	1	1	7	0	1	0	0	0	0	0	0	0	10659	1711	59	5		5	NPAS3	14	34204396	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	1056689	34204396	73145144	809	7033											
FANCM	57697	broad.mit.edu	37	chr14	45657134	45657134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatttctggatgatgatGttgaaatatgttcctgttag	11	3	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45657134	T	T	45657134	1	4	7	0	1	0	0	0	0	0	0	0	5728	1392	48	3		3	FANCM	14	45657134	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	11452738	45657134	61692406	810	7034											
MDGA2	161357	broad.mit.edu	37	chr14	47504082	47504082	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatgtagaaatagttcattCaatccaatgtagaaatgtag	8	4	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47504082	G	G	47504082	1	3	7	0	1	0	0	0	0	0	0	0	9500	841	29	4		4	MDGA2	14	47504082	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1846948	47504082	59845458	811	7035											
SDCCAG1	9147	broad.mit.edu	37	chr14	50053136	50053136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcttcaaatttttgagaCagtttacccagaatgcagtg	8	9	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50053136	A	A	50053136	1	1	7	0	1	0	0	0	0	0	0	0	14070	493	17	3		3	SDCCAG1	14	50053136	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2549054	50053136	57296404	812	7036											
ATL1	51062	broad.mit.edu	37	chr14	51087337	51087337	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatagatgatgaattcatcAaaaacttgaaaatactgatt	5	4	2	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51087337	T	T	51087337	4	4	7	1	0	0	0	0	0	1	0	0	1110	131	5	5	917	5	ATL1	14	51087337	Nonsense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1034201	51087337	56262203	813	7037											
NID2	22795	broad.mit.edu	37	chr14	52509170	52509170	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttccaaaactcactcttTagcaagtcactttaatgatt	3	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52509170	C	C	52509170	1	2	7	0	1	0	0	0	0	0	0	0	10510	1769	61	5		5	NID2	14	52509170	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	1421833	52509170	54840370	814	7038											
SAMD4A	23034	broad.mit.edu	37	chr14	55243227	55243227	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgcccgtgcacacttcCccacagaacatgctgatgtt	8	15	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55243227	G	G	55243227	2	3	7	1	0	0	0	0	0	0	0	1	13932	610	22	4		4	SAMD4A	14	55243227	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2734057	55243227	52106313	815	7039											
DACT1	51339	broad.mit.edu	37	chr14	59112601	59112601	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccccaccgaagcagtggtcGaaagaatcaaaggccgaaca	10	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59112601	A	A	59112601	2	1	7	1	0	0	0	0	0	0	0	1	4255	1045	37	4		4	DACT1	14	59112601	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	3869374	59112601	48236939	816	7040											
MNAT1	4331	broad.mit.edu	37	chr14	61246835	61246835	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatctttactcgagtgcAgaaatacggactcaccttgc	8	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61246835	C	C	61246835	1	2	7	0	1	0	0	0	0	0	0	0	9768	203	7	5		5	MNAT1	14	61246835	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2134234	61246835	46102705	817	7041											
PRKCH	5583	broad.mit.edu	37	chr14	61915900	61915900	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgcacctgtgtcgtccAtaaacgctgccatcatctaa	8	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61915900	G	G	61915900	3	3	7	1	0	0	0	0	1	0	0	0	12619	217	8	5	650	5	PRKCH	14	61915900	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	669065	61915900	45433640	818	7042											
SYT16	83851	broad.mit.edu	37	chr14	62567160	62567160	+	Frame_Shift_Del	DEL	C	-	-													ttctgtgggtcaagagatgtCccgttgcaagacgtccattc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62567160	-	-	62567160	7	5	7	1	0	1	0	1	0	0	0	0	15591	855	30	0	1695	0	SYT16	14	62567160	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	651260	62567160	44782380	819	7043											
SYNE2	23224	broad.mit.edu	37	chr14	64586402	64586403	+	Intron	DNP	GG	TT	TT													gccagaagagaactctggttGgaagtgatgaaccagctaca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	64586403	TT	TT	64586402	1	4	7	0	1	0	0	0	0	0	0	0	15565	1363	47	2		2	SYNE2	14	64586402	Intron	DNP	GG	TCGA-05-4390-01A-02D-1753-08	2019242	64586402	42763138	820	7044											
SYNE2	23224	broad.mit.edu	37	chr14	64676862	64676862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagctcctctgcacctgGctcgggtgtagattttccag	13	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64676862	T	T	64676862	1	4	7	0	1	0	0	0	0	0	0	0	15565	1218	42	3		3	SYNE2	14	64676862	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	90460	64676862	42672678	821	7045											
FAM71D	161142	broad.mit.edu	37	chr14	67666417	67666417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcagctgtttgcagatGcacctccttcaccctctgcc	6	17	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67666417	A	A	67666417	1	1	7	0	1	0	0	0	0	0	0	0	5661	1334	46	4		4	FAM71D	14	67666417	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2989555	67666417	39683123	822	7046											
PCNX	22990	broad.mit.edu	37	chr14	71518828	71518828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatggttcataatttattGtgttgaaatatttatttttg	6	1	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71518828	T	T	71518828	1	4	7	0	1	0	0	0	0	0	0	0	11685	1392	48	3		3	PCNX	14	71518828	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3852411	71518828	35830712	823	7047											
C14orf179	112752	broad.mit.edu	37	chr14	76548500	76548500	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacctttgatcctacccctaGtttgtatctgagtgtccttc	6	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76548500	C	C	76548500	1	2	7	0	1	0	0	0	0	0	0	0	1775	1044	36	4		4	C14orf179	14	76548500	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	5029672	76548500	30801040	824	7048											
NRXN3	9369	broad.mit.edu	37	chr14	79180975	79180975	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattgtcttgtaacatctaAttctcttgcttacattgttc	4	10	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79180975	T	T	79180975	1	4	7	0	1	0	0	0	0	0	0	0	10762	116	4	5		5	NRXN3	14	79180975	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2632475	79180975	28168565	825	7049											
NRXN3	9369	broad.mit.edu	37	chr14	79181120	79181120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactatatcagtgaacagcaGgcgcacgccattcaccgcca	8	14	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79181120	T	T	79181120	3	4	7	1	0	0	0	0	1	0	0	0	10762	1000	35	2	573	2	NRXN3	14	79181120	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	145	79181120	28168420	826	7050											
IFI27L1	122509	broad.mit.edu	37	chr14	94568239	94568239	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcgccgcatcctccatagcAgccaagatgatgtctacagc	8	14	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94568239	T	T	94568239	2	4	7	1	0	0	0	0	0	0	0	1	7583	175	7	5		5	IFI27L1	14	94568239	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	15387119	94568239	12781301	827	7051											
SERPINA11	256394	broad.mit.edu	37	chr14	94912611	94912611	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcagctggagttgatcaAgacctgctggggttcttgag	14	7	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94912611	C	C	94912611	1	2	7	0	1	0	0	0	0	0	0	0	14201	87	3	5		5	SERPINA11	14	94912611	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	344372	94912611	12436929	828	7052											
SERPINA5	5104	broad.mit.edu	37	chr14	95057199	95057199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccatgctgatctgtccgGcatcagcaaccactcaaata	6	15	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95057199	T	T	95057199	3	4	7	1	0	0	0	0	1	0	0	0	14205	1203	42	3	1014	3	SERPINA5	14	95057199	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	144588	95057199	12292341	829	7053											
TCL1A	8115	broad.mit.edu	37	chr14	96178706	96178706	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtcttcccgacgcaagaGcacccgtaactgtaacctat	8	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96178706	A	A	96178706	3	1	7	1	0	0	0	0	1	0	0	0	15826	971	34	4	204	4	TCL1A	14	96178706	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1121507	96178706	11170834	830	7054											
SETD3	84193	broad.mit.edu	37	chr14	99865538	99865538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagagggcacaacggctgGggatggggacatgagggaac	19	7	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99865538	T	T	99865538	1	4	7	0	1	0	0	0	0	0	0	0	14245	1247	43	2		2	SETD3	14	99865538	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3686832	99865538	7484002	831	7055											
SETD3	84193	broad.mit.edu	37	chr14	99925494	99925494	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caacagtcattagcaattttCgtggaacccataaaaacaat	5	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99925494	T	T	99925494	3	4	7	1	0	0	0	0	1	0	0	0	14245	884	31	4	1492	4	SETD3	14	99925494	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	59956	99925494	7424046	832	7056											
TDRD9	122402	broad.mit.edu	37	chr14	104492517	104492517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaatgctgcatgctggaCaggattcctgggtggattcc	13	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104492517	A	A	104492517	1	1	7	0	1	0	0	0	0	0	0	0	15858	493	17	3		3	TDRD9	14	104492517	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4567023	104492517	2857023	833	7057											
OR4N4	283694	broad.mit.edu	37	chr15	22332708	22332708	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttttcaggatgcctggcCcagatctacttcctccactt	6	14	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22332708	A	A	22332708	1	1	7	0	1	0	0	0	0	0	0	0	11172	638	22	2		2	OR4N4	15	22332708	5'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08		22332708	80198684	834	7058											
RYR3	6263	broad.mit.edu	37	chr15	34064146	34064146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaagtcaggctcagagCtggtgaaggctgggttacga	15	7	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34064146	A	A	34064146	3	1	7	1	0	0	0	0	1	0	0	0	13881	796	28	3	9092	3	RYR3	15	34064146	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	11731438	34064146	68467246	835	7059											
SLC12A6	9990	broad.mit.edu	37	chr15	34530465	34530465	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtaggaatggtagtagcaTaagcatccccccatcatgca	9	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34530465	A	A	34530465	3	1	7	1	0	0	0	0	1	0	0	0	14500	1406	49	5	706	5	SLC12A6	15	34530465	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	466319	34530465	68000927	836	7060											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42137530	42137530	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttgggggtgagtggcccAagagctgagacctgtgccct	15	9	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42137530	G	G	42137530	1	3	7	0	1	0	0	0	0	0	0	0	8025	145	5	5		5	JMJD7-PLA2G4B	15	42137530	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	7607065	42137530	60393862	837	7061											
SPTBN5	51332	broad.mit.edu	37	chr15	42168805	42168805	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcactcctcccctggagccTggtccactgtgcctggatac	9	17	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42168805	A	A	42168805	3	1	7	1	0	0	0	0	1	0	0	0	15240	1579	55	5	7328	5	SPTBN5	15	42168805	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	31275	42168805	60362587	838	7062											
TP53BP1	7158	broad.mit.edu	37	chr15	43771675	43771676	+	Missense_Mutation	DNP	CT	TA	TA													acagggatgtccttgctggaCtgttctgctatggggatatc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	43771676	TA	TA	43771675	3	4	7	1	0	0	0	0	1	0	0	0	16507	564	20	4	5313	4	TP53BP1	15	43771675	Missense_Mutation	DNP	CT	TCGA-05-4390-01A-02D-1753-08	1602870	43771675	58759717	839	7063											
TRIM69	140691	broad.mit.edu	37	chr15	45047534	45047534	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtctgtggggcagtctaAggagttcctgcaaatctctg	13	8	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45047534	G	G	45047534	3	3	7	1	0	0	0	0	1	0	0	0	16667	72	3	5	449	5	TRIM69	15	45047534	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1275859	45047534	57483858	840	7064											
SEMA6D	80031	broad.mit.edu	37	chr15	48022593	48022593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgccttccccttgataatGcagtaagggacccccatttt	7	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48022593	T	T	48022593	1	4	7	0	1	0	0	0	0	0	0	0	14155	1334	46	3		3	SEMA6D	15	48022593	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2975059	48022593	54508799	841	7065											
SLC24A5	283652	broad.mit.edu	37	chr15	48427124	48427124	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctattcagagactgtgcagCgtacacaattagtgcagcag	10	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48427124	G	G	48427124	3	3	7	1	0	0	0	0	1	0	0	0	14583	768	27	4	551	4	SLC24A5	15	48427124	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	404531	48427124	54104268	842	7066											
ATP8B4	79895	broad.mit.edu	37	chr15	50193542	50193542	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttatttcaccactattcaGagagaatatggcataagacc	6	8	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50193542	T	T	50193542	1	4	7	0	1	0	0	0	0	0	0	0	1201	957	33	3		3	ATP8B4	15	50193542	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1766418	50193542	52337850	843	7067											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51397328	51397328	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctttggctctgcctcacAgagtgtggaaaccagtgtgc	11	13	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51397328	G	G	51397328	3	3	7	1	0	0	0	0	1	0	0	0	16402	188	7	5	844	5	TNFAIP8L3	15	51397328	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1203786	51397328	51134064	844	7068											
MYO5A	4644	broad.mit.edu	37	chr15	52613419	52613419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttctgggattcctcggCtaattttagccctgtatctt	10	9	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52613419	A	A	52613419	1	1	7	0	1	0	0	0	0	0	0	0	10172	812	28	3		3	MYO5A	15	52613419	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1216091	52613419	49917973	845	7069											
UNC13C	440279	broad.mit.edu	37	chr15	54817797	54817797	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacttcaggttaagctcagTggggtcctggatgagctcag	14	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54817797	C	C	54817797	2	2	7	1	0	0	0	0	0	0	0	1	17112	1693	59	5		5	UNC13C	15	54817797	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	2204378	54817797	47713595	846	7070											
VPS13C	54832	broad.mit.edu	37	chr15	62160902	62160902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcctgtctgtcataaggacGaatgatgccatcttcatgga	9	9	4	1	rs149574145		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62160902	A	A	62160902	3	1	7	1	0	0	0	0	1	0	0	0	17318	1058	37	4	490	4	VPS13C	15	62160902	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	7343105	62160902	40370490	847	7071											
ZNF609	23060	broad.mit.edu	37	chr15	64821726	64821726	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccatgtgtagaatcataCaggaacatgtagaccatgta	9	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64821726	T	T	64821726	1	4	7	0	1	0	0	0	0	0	0	0	18162	493	17	4		4	ZNF609	15	64821726	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2660824	64821726	37709666	848	7072											
IGDCC3	9543	broad.mit.edu	37	chr15	65625516	65625517	+	Intron	DNP	CC	AA	AA													agactggggtgggacagggcCctggggttgggcctgggctg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	65625517	AA	AA	65625516	1	1	7	0	1	0	0	0	0	0	0	0	7638	638	22	2		2	IGDCC3	15	65625516	Intron	DNP	CC	TCGA-05-4390-01A-02D-1753-08	803790	65625516	36905876	849	7073											
TIPIN	54962	broad.mit.edu	37	chr15	66639603	66639603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaccctgtcggcaggaaCcatctgttttaatgtgtgtg	11	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66639603	A	A	66639603	1	1	7	0	1	0	0	0	0	0	0	0	16048	522	18	3		3	TIPIN	15	66639603	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1014087	66639603	35891789	850	7074											
ZWILCH	55055	broad.mit.edu	37	chr15	66797595	66797595	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaatagtcccggcgggGcggggccatgacccctgacg	15	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66797595	C	C	66797595	1	2	7	0	1	0	0	0	0	0	0	0	18377	1218	42	4		4	ZWILCH	15	66797595	5'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	157992	66797595	35733797	851	7075											
ZWILCH	55055	broad.mit.edu	37	chr15	66811350	66811350	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaggtacttgttggctaGgagctgagcttatcacaaca	11	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66811350	T	T	66811350	4	4	7	1	0	0	0	0	0	1	0	0	18377	1001	35	2	472	2	ZWILCH	15	66811350	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	13755	66811350	35720042	852	7076											
ITGA11	22801	broad.mit.edu	37	chr15	68657091	68657091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcgagactaaggccgaggCgcatgttgtctttccgctcg	14	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68657091	A	A	68657091	3	1	7	1	0	0	0	0	1	0	0	0	7944	768	27	3	3363	3	ITGA11	15	68657091	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1845741	68657091	33874301	853	7077											
LRRC49	54839	broad.mit.edu	37	chr15	71193205	71193205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatataagatgactttaGtttcagacttcgaaggtttt	7	6	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71193205	T	T	71193205	1	4	7	0	1	0	0	0	0	0	0	0	9093	1044	36	3		3	LRRC49	15	71193205	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2536114	71193205	31338187	854	7078											
MYO9A	4649	broad.mit.edu	37	chr15	72190736	72190736	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgagggcattgtcccGtgaatcaaattttggactgc	12	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72190736	A	A	72190736	3	1	7	1	0	0	0	0	1	0	0	0	10178	1144	40	4	3610	4	MYO9A	15	72190736	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	997531	72190736	30340656	855	7079											
EFTUD1	79631	broad.mit.edu	37	chr15	82520722	82520722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatatgcagatataaacagGcagtggaacccaacattatt	7	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82520722	T	T	82520722	1	4	7	0	1	0	0	0	0	0	0	0	5000	1218	42	3		3	EFTUD1	15	82520722	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	10329986	82520722	20010670	856	7080											
AP3B2	8120	broad.mit.edu	37	chr15	83333005	83333005	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtgagctgacagccccacCcagctcacgaggggctcagg	13	14	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83333005	G	G	83333005	1	3	7	0	1	0	0	0	0	0	0	0	747	638	22	4		4	AP3B2	15	83333005	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	812283	83333005	19198387	857	7081											
PGPEP1L	145814	broad.mit.edu	37	chr15	99514313	99514313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccctccgcttagcctcCctgtaatctacaggcagctc	8	16	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99514313	A	A	99514313	3	1	7	1	0	0	0	0	1	0	0	0	11899	622	22	2	506	2	PGPEP1L	15	99514313	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	16181308	99514313	3017079	858	7082											
LUC7L	55692	broad.mit.edu	37	chr16	242747	242747	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgacctcaagtgttctgcCcgcctcagcctcccaaactg	7	18	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242747	T	T	242747	1	4	7	0	1	0	0	0	0	0	0	0	9169	638	22	4		4	LUC7L	16	242747	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08		242747	90112006	859	7083											
WDR90	197335	broad.mit.edu	37	chr16	705382	705382	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgttcctgccccgtggaCttaggggagcaccacgcgct	13	15	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	705382	T	T	705382	2	4	7	1	0	0	0	0	0	0	0	1	17464	564	20	4		4	WDR90	16	705382	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	462635	705382	89649371	860	7084											
TSC2	7249	broad.mit.edu	37	chr16	2134791	2134791	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcctcacttgccccaggccGagcgggctggggtggggtcc	17	14	1	0	rs147608899	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2134791	A	A	2134791	1	1	7	0	1	0	0	0	0	0	0	0	16731	1073	37	4		4	TSC2	16	2134791	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1429409	2134791	88219962	861	7085											
NPIP	9284	broad.mit.edu	37	chr16	15029321	15029322	+	5'Flank	DNP	GG	TT	TT													ctggagtgccgggggtgtgcGggctgcgtgtccttgctggg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15029322	TT	TT	15029321	1	4	7	0	1	0	0	0	0	0	0	0	10679	1131	39	1		1	NPIP	16	15029321	5'Flank	DNP	GG	TCGA-05-4390-01A-02D-1753-08	12894530	15029321	75325432	862	7086											
PDXDC1	23042	broad.mit.edu	37	chr16	15125479	15125479	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttaaatctccatggctccCggtaactggagtacctcgag	10	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15125479	T	T	15125479	1	4	7	0	1	0	0	0	0	0	0	0	11790	667	23	4		4	PDXDC1	16	15125479	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	96158	15125479	75229274	863	7087											
MYH11	4629	broad.mit.edu	37	chr16	15813418	15813418	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacacccgcatctgaggcTctcctagcaaggcgaggctt	12	13	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15813418	G	G	15813418	1	3	7	0	1	0	0	0	0	0	0	0	10125	1566	54	5		5	MYH11	16	15813418	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	687939	15813418	74541335	864	7088											
MYH11	4629	broad.mit.edu	37	chr16	15818582	15818582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctggtcttgcaggctGttccgctcctcctccagctg	10	16	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15818582	T	T	15818582	3	4	7	1	0	0	0	0	1	0	0	0	10125	1368	48	3	1963	3	MYH11	16	15818582	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	5164	15818582	74536171	865	7089											
GPRC5B	51704	broad.mit.edu	37	chr16	19873217	19873217	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatacacgttgcttctaaacGgagcgctgggtcttttcccc	10	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19873217	C	C	19873217	3	2	7	1	0	0	0	0	1	0	0	0	6791	1116	39	4	110	4	GPRC5B	16	19873217	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4054635	19873217	70481536	866	7090											
GP2	2813	broad.mit.edu	37	chr16	20329502	20329502	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgataattccagaattgctcGttacctgtttctgatgatga	8	7	1	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20329502	A	A	20329502	1	1	7	0	1	0	0	0	0	0	0	0	6647	1160	40	4		4	GP2	16	20329502	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	456285	20329502	70025251	867	7091											
ACSM2A	123876	broad.mit.edu	37	chr16	20487119	20487119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttcccaggggaaccatGggctgtgtgcactttttggg	14	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20487119	T	T	20487119	1	4	7	0	1	0	0	0	0	0	0	0	183	1363	47	2		2	ACSM2A	16	20487119	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	157617	20487119	69867634	868	7092											
ACSM2B	348158	broad.mit.edu	37	chr16	20563612	20563612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatcagaggcttgcaggcCtgtccaactgaaaacacaga	9	10	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20563612	A	A	20563612	3	1	7	1	0	0	0	0	1	0	0	0	184	681	24	2	1021	2	ACSM2B	16	20563612	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	76493	20563612	69791141	869	7093											
DNAH3	55567	broad.mit.edu	37	chr16	21078598	21078598	+	Intron	DEL	G	-	-													ccaaataaaagaacaatgctGgatacctggggaagaatagt							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21078598	-	-	21078598	6	5	7	0	1	1	0	1	0	0	0	0	4643	1363	47	0		0	DNAH3	16	21078598	Intron	DEL	G	TCGA-05-4390-01A-02D-1753-08	514986	21078598	69276155	870	7094											
UQCRC2	7385	broad.mit.edu	37	chr16	21991823	21991823	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accactcagaaaaaaaaaatAattgccttgctctctaaaac	3	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21991823	T	T	21991823	1	4	7	0	1	0	0	0	0	0	0	0	17146	377	13	5		5	UQCRC2	16	21991823	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	913225	21991823	68362930	871	7095											
GGA2	23062	broad.mit.edu	37	chr16	23502983	23502983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaggaaataagacacagTaaggcaagtcagaccttgtt	10	7	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23502983	C	C	23502983	1	2	7	0	1	0	0	0	0	0	0	0	6417	1653	57	5		5	GGA2	16	23502983	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	1511160	23502983	66851770	872	7096											
EARS2	124454	broad.mit.edu	37	chr16	23540900	23540900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgacctactgcagggcgagtCcacaggtaagagtatactgg	13	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23540900	A	A	23540900	3	1	7	1	0	0	0	0	1	0	0	0	4918	856	30	3	308	3	EARS2	16	23540900	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	37917	23540900	66813853	873	7097											
PALB2	79728	broad.mit.edu	37	chr16	23637683	23637683	+	Frame_Shift_Del	DEL	G	-	-													ccggctctttcccaaaacatGgcactcacatctacggaaca							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23637683	-	-	23637683	7	5	7	1	0	1	0	1	0	0	0	0	11500	1335	47	0	966	0	PALB2	16	23637683	Frame_Shift_Del	DEL	G	TCGA-05-4390-01A-02D-1753-08	96783	23637683	66717070	874	7098											
CHP2	63928	broad.mit.edu	37	chr16	23766948	23766948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggagctggccctgcagaGtcacacacccccaccccact	8	19	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23766948	T	T	23766948	1	4	7	0	1	0	0	0	0	0	0	0	3398	1044	36	3		3	CHP2	16	23766948	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	129265	23766948	66587805	875	7099											
SLC5A11	115584	broad.mit.edu	37	chr16	24888526	24888526	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctgtgctgcaaatgtccActcattcattcattcgttca	5	12	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24888526	C	C	24888526	1	2	7	0	1	0	0	0	0	0	0	0	14777	174	6	5		5	SLC5A11	16	24888526	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1121578	24888526	65466227	876	7100											
ARHGAP17	55114	broad.mit.edu	37	chr16	24979910	24979910	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaaagccagcaactactgTtaaaattttaacactcactg	5	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24979910	A	A	24979910	1	1	7	0	1	0	0	0	0	0	0	0	869	1740	60	5		5	ARHGAP17	16	24979910	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	91384	24979910	65374843	877	7101											
GTF3C1	2975	broad.mit.edu	37	chr16	27523148	27523148	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtcttggagatgacctcctCgtcctcgtcatcatcatggt	9	12	4	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27523148	G	G	27523148	3	3	7	1	0	0	0	0	1	0	0	0	6937	893	31	4	5405	4	GTF3C1	16	27523148	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2543238	27523148	62831605	878	7102											
CD19	930	broad.mit.edu	37	chr16	28948466	28948466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgggagtgggtgaatgaCtgggagagggaagggtcgtt	21	5	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28948466	A	A	28948466	1	1	7	0	1	0	0	0	0	0	0	0	3003	580	20	3		3	CD19	16	28948466	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1425318	28948466	61406287	879	7103											
TRIM72	493829	broad.mit.edu	37	chr16	31230652	31230652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgtgggggagcagctgGgcaagatgcgggtgttcctg	21	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31230652	T	T	31230652	3	4	7	1	0	0	0	0	1	0	0	0	16670	1232	43	2	539	2	TRIM72	16	31230652	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2282186	31230652	59124101	880	7104											
ITGAX	3687	broad.mit.edu	37	chr16	31373541	31373541	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggtgagaaacagccagGggttggggacaggtgggaga	20	6	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31373541	T	T	31373541	1	4	7	0	1	0	0	0	0	0	0	0	7959	1247	43	2		2	ITGAX	16	31373541	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	142889	31373541	58981212	881	7105											
ABCC11	85320	broad.mit.edu	37	chr16	48248819	48248819	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgagtttcagctttaaGgatgtgtggatgagaaccca	13	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48248819	T	T	48248819	2	4	7	1	0	0	0	0	0	0	0	1	51	987	35	2		2	ABCC11	16	48248819	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	16875278	48248819	42105934	882	7106											
ZNF423	23090	broad.mit.edu	37	chr16	49670060	49670060	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcagtgctcaataaactcCtcctcgctctgcaggggcat	10	13	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49670060	G	G	49670060	3	3	7	1	0	0	0	0	1	0	0	0	18025	680	24	4	871	4	ZNF423	16	49670060	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1421241	49670060	40684693	883	7107											
FTO	79068	broad.mit.edu	37	chr16	53967990	53967990	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgcctcgctcactgcaCgccagaacctgaggagagaa	10	14	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53967990	T	T	53967990	3	4	7	1	0	0	0	0	1	0	0	0	6146	536	19	4	1363	4	FTO	16	53967990	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	4297930	53967990	36386763	884	7108											
MMP2	4313	broad.mit.edu	37	chr16	55519237	55519237	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgatggatacccctttgacGgtaaggacggactcctggct	13	11	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55519237	C	C	55519237	3	2	7	1	0	0	0	0	1	0	0	0	9751	1116	39	4	577	4	MMP2	16	55519237	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1551247	55519237	34835516	885	7109											
NLRC5	84166	broad.mit.edu	37	chr16	57111715	57111715	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgcctggaggagttgatGtgagtgtctgcccaggtggc	18	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57111715	T	T	57111715	5	4	7	1	0	0	0	0	0	0	1	0	10565	1391	48	3	5162	3	NLRC5	16	57111715	Splice_Site	SNP	G	TCGA-05-4390-01A-02D-1753-08	1592478	57111715	33243038	886	7110											
CDH8	1006	broad.mit.edu	37	chr16	61890960	61890960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttcataacccaaatccCaagaaaagcatttccctgaa	3	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61890960	A	A	61890960	1	1	7	0	1	0	0	0	0	0	0	0	3146	609	21	2		2	CDH8	16	61890960	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4779245	61890960	28463793	887	7111											
CES3	23491	broad.mit.edu	37	chr16	66998348	66998348	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaacatcgcccccttcGggggtgacctcaactgtgtc	10	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66998348	A	A	66998348	3	1	7	1	0	0	0	0	1	0	0	0	3301	1116	39	4	667	4	CES3	16	66998348	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	5107388	66998348	23356405	888	7112											
SLC9A5	6553	broad.mit.edu	37	chr16	67289214	67289214	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatgctgtctgctttcacCctgctctcccagcagtctgt	7	14	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67289214	T	T	67289214	1	4	7	0	1	0	0	0	0	0	0	0	14831	638	22	4		4	SLC9A5	16	67289214	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	290866	67289214	23065539	889	7113											
RANBP10	57610	broad.mit.edu	37	chr16	67763766	67763766	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcaataatgctctggttgTggtccaggttgacgttccca	12	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67763766	C	C	67763766	1	2	7	0	1	0	0	0	0	0	0	0	13134	1711	59	5		5	RANBP10	16	67763766	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	474552	67763766	22590987	890	7114											
ZFHX3	463	broad.mit.edu	37	chr16	72993847	72993847	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggaggggggcccggccgaCgcggtgctctccgcgaggcg	20	14	1	0	rs143119253	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72993847	A	A	72993847	2	1	7	1	0	0	0	0	0	0	0	1	17760	523	19	3		3	ZFHX3	16	72993847	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	5230081	72993847	17360906	891	7115											
CNTNAP4	85445	broad.mit.edu	37	chr16	76513239	76513239	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttaaatttcaagatttgCggtatttcatgtccaaatta	5	5	2	1	rs150568908	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76513239	T	T	76513239	1	4	7	0	1	0	0	0	0	0	0	0	3681	783	27	4		4	CNTNAP4	16	76513239	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3519392	76513239	13841514	892	7116											
ADAMTS18	170692	broad.mit.edu	37	chr16	77317892	77317892	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttgcagcattgttttccGtaaaacttgtggttgcagac	10	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77317892	T	T	77317892	4	4	7	1	0	0	0	0	0	1	0	0	263	1140	40	3	42	3	ADAMTS18	16	77317892	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	804653	77317892	13036861	893	7117											
VAT1L	57687	broad.mit.edu	37	chr16	78005613	78005614	+	Intron	INS	-	A	A													gcaccccagcgtccaacagcINSaacctcttagccactaaact							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78005614	A	A	78005613	6	5	7	0	1	1	1	0	0	0	0	0	17257	725	25	0		0	VAT1L	16	78005613	Intron	INS	-	TCGA-05-4390-01A-02D-1753-08	687721	78005613	12349140	894	7118											
ZC3H18	124245	broad.mit.edu	37	chr16	88666115	88666115	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagggctgctgcggtcGggtgggacggctccctttgt	17	12	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88666115	C	C	88666115	1	2	7	0	1	0	0	0	0	0	0	0	17694	1131	39	4		4	ZC3H18	16	88666115	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	10660502	88666115	1688638	895	7119											
FBXO39	162517	broad.mit.edu	37	chr17	6690699	6690699	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaggaagtacagaaagctGatcgaatcagagcttagcta	10	7	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6690699	T	T	6690699	2	4	7	1	0	0	0	0	0	0	0	1	5804	1277	45	3		3	FBXO39	17	6690699	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08		6690699	74504511	896	7120											
DLG4	1742	broad.mit.edu	37	chr17	7094195	7094195	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaggacacctggccaaggGggttgcaccagcccagagga	15	12	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7094195	A	A	7094195	1	1	7	0	1	0	0	0	0	0	0	0	4597	1247	43	4		4	DLG4	17	7094195	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	403496	7094195	74101015	897	7121											
ACAP1	9744	broad.mit.edu	37	chr17	7245801	7245801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggtcaaggagtgagatGgggccgggcgcagtggctca	18	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7245801	T	T	7245801	1	4	7	0	1	0	0	0	0	0	0	0	118	1363	47	2		2	ACAP1	17	7245801	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	151606	7245801	73949409	898	7122											
ACAP1	9744	broad.mit.edu	37	chr17	7246801	7246801	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggttcccaggcgccgggccCaggaggcagaagaggcagga	18	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7246801	G	G	7246801	3	3	7	1	0	0	0	0	1	0	0	0	118	595	21	4	470	4	ACAP1	17	7246801	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1000	7246801	73948409	899	7123											
C17orf74	201243	broad.mit.edu	37	chr17	7330846	7330846	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtggggtgtggggcagGgcatggagggagaggaataa	23	2	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7330846	T	T	7330846	1	4	7	0	1	0	0	0	0	0	0	0	1896	1247	43	2		2	C17orf74	17	7330846	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	84045	7330846	73864364	900	7124											
DNAH2	146754	broad.mit.edu	37	chr17	7638002	7638002	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcctacttggcgcccttTatgaaactggcacagcagat	9	12	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7638002	C	C	7638002	2	2	7	1	0	0	0	0	0	0	0	1	4642	1751	61	5		5	DNAH2	17	7638002	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	307156	7638002	73557208	901	7125											
DNAH2	146754	broad.mit.edu	37	chr17	7701348	7701348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcctgggccttgggcacCaacttcttctcatacctctt	7	16	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7701348	A	A	7701348	1	1	7	0	1	0	0	0	0	0	0	0	4642	609	21	2		2	DNAH2	17	7701348	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	63346	7701348	73493862	902	7126											
MYH13	8735	broad.mit.edu	37	chr17	10206386	10206386	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagggcagttgtctctgtgtTtatagcctgcaaatacaaac	10	8	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10206386	A	A	10206386	1	1	7	0	1	0	0	0	0	0	0	0	10126	1856	64	5		5	MYH13	17	10206386	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	2505038	10206386	70988824	903	7127											
MYH1	4619	broad.mit.edu	37	chr17	10397671	10397671	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggggttgtgaactcacCgcttcttcagcttgtctctt	9	12	4	1	rs145273788	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10397671	T	T	10397671	2	4	7	1	0	0	0	0	0	0	0	1	10123	666	23	4		4	MYH1	17	10397671	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	191285	10397671	70797539	904	7128											
MYH1	4619	broad.mit.edu	37	chr17	10402323	10402323	+	Frame_Shift_Del	DEL	C	-	-													ttcaagttgccttttcagttCctcaatctgttgtgtaaagg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10402323	-	-	10402323	7	5	7	1	0	1	0	1	0	0	0	0	10123	864	30	0	1915	0	MYH1	17	10402323	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	4652	10402323	70792887	905	7129											
MYH2	4620	broad.mit.edu	37	chr17	10424853	10424853	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatggagaagcaacatctAgggattatcattgaaattaa	8	5	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10424853	G	G	10424853	1	3	7	0	1	0	0	0	0	0	0	0	10129	435	15	5		5	MYH2	17	10424853	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	22530	10424853	70770357	906	7130											
MYH2	4620	broad.mit.edu	37	chr17	10426621	10426621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgctaaaaactactggctGtacctggtaagtgagttcct	10	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10426621	T	T	10426621	1	4	7	0	1	0	0	0	0	0	0	0	10129	1392	48	3		3	MYH2	17	10426621	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1768	10426621	70768589	907	7131											
DNAH9	1770	broad.mit.edu	37	chr17	11837221	11837221	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctatgatgatttgcgctacCtgtttggagagatcatgtat	10	7	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11837221	T	T	11837221	2	4	7	1	0	0	0	0	0	0	0	1	4648	680	24	4		4	DNAH9	17	11837221	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1410600	11837221	69357989	908	7132											
ZNF18	7566	broad.mit.edu	37	chr17	11894233	11894233	+	Intron	SNP	C	A	A													accatttcaactcacttaggCctactaatcacaatcccaaa							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11894233	A	A	11894233	1	1	7	0	1	0	0	0	0	0	0	0	17873	754	26	3		3	ZNF18	17	11894233	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	57012	11894233	69300977	909	7133	26	2									
ZNF18	7566	broad.mit.edu	37	chr17	11894237	11894237	+	Intron	SNP	C	A	A													tttcaactcacttaggcctaCtaatcacaatcccaaaatct							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11894237	A	A	11894237	1	1	7	0	1	0	0	0	0	0	0	0	17873	580	20	3		3	ZNF18	17	11894237	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4	11894237	69300973	910	7134	26	2									
MYOCD	93649	broad.mit.edu	37	chr17	12656400	12656400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcagagtgtcacccaCcggcttgtgaagctgctcaa	11	13	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12656400	A	A	12656400	3	1	7	1	0	0	0	0	1	0	0	0	10181	507	18	3	1833	3	MYOCD	17	12656400	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	762163	12656400	68538810	911	7135											
LGALS9C	654346	broad.mit.edu	37	chr17	18395712	18395712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactggtacaatcttcccCttccatgtggcggctgccct	10	14	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18395712	A	A	18395712	1	1	7	0	1	0	0	0	0	0	0	0	8822	696	24	2		2	LGALS9C	17	18395712	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	5739312	18395712	62799498	912	7136											
SLC47A1	55244	broad.mit.edu	37	chr17	19480964	19480964	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagttaatgtcattcaGgtgtgcccatggattttgag	12	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19480964	T	T	19480964	1	4	7	0	1	0	0	0	0	0	0	0	14761	1015	35	2		2	SLC47A1	17	19480964	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	1085252	19480964	61714246	913	7137											
PIGS	94005	broad.mit.edu	37	chr17	26883184	26883184	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatcatccaggacctcacCgcaactgtgccaggaacacc	9	15	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26883184	A	A	26883184	3	1	7	1	0	0	0	0	1	0	0	0	11993	666	23	1	498	1	PIGS	17	26883184	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	7402220	26883184	54312026	914	7138											
MYO18A	399687	broad.mit.edu	37	chr17	27438410	27438410	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcaaaacagtcctgggtaCagaacaggggcggagggagt	15	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27438410	G	G	27438410	1	3	7	0	1	0	0	0	0	0	0	0	10159	493	17	4		4	MYO18A	17	27438410	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	555226	27438410	53756800	915	7139											
CORO6	84940	broad.mit.edu	37	chr17	27948283	27948283	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcacccccgcctccagCctccacaataatggccagga	9	17	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27948283	G	G	27948283	3	3	7	1	0	0	0	0	1	0	0	0	3790	739	26	4	1301	4	CORO6	17	27948283	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	509873	27948283	53246927	916	7140											
AMAC1	146861	broad.mit.edu	37	chr17	33520262	33520262	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgtcttcagtctttgcCtttatttatccctgtccctc	5	12	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33520262	A	A	33520262	1	1	7	0	1	0	0	0	0	0	0	0	559	696	24	2		2	AMAC1	17	33520262	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	5571979	33520262	47674948	917	7141											
SLFN5	162394	broad.mit.edu	37	chr17	33585721	33585721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgagaagatgagtcttagGattgatgtggatacaaactt	12	4	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33585721	T	T	33585721	3	4	7	1	0	0	0	0	1	0	0	0	14851	1165	41	3	14	3	SLFN5	17	33585721	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	65459	33585721	47609489	918	7142											
KRT28	162605	broad.mit.edu	37	chr17	38955966	38955966	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagggcaccaccagcatgGctcccaccaggaacactgcc	9	18	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38955966	A	A	38955966	2	1	7	1	0	0	0	0	0	0	0	1	8536	1194	42	4		4	KRT28	17	38955966	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	5370245	38955966	42239244	919	7143											
ACLY	47	broad.mit.edu	37	chr17	40054107	40054107	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtctggggtgagataaGgagagagtgtaagaggtaag	19	2	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40054107	A	A	40054107	1	1	7	0	1	0	0	0	0	0	0	0	143	1015	35	4		4	ACLY	17	40054107	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1098141	40054107	41141103	920	7144											
BECN1	8678	broad.mit.edu	37	chr17	40962758	40962758	+	3'UTR	DEL	C	-	-													ttaaaagcctttaaggcaaaCctccccctaaggaaaaaagt							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40962758	-	-	40962758	6	5	7	0	1	1	0	1	0	0	0	0	1401	522	18	0		0	BECN1	17	40962758	3'UTR	DEL	C	TCGA-05-4390-01A-02D-1753-08	908651	40962758	40232452	921	7145											
BRCA1	672	broad.mit.edu	37	chr17	41203207	41203207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttataaaagaatattggCttttattcaaaaaacagact	5	4	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41203207	A	A	41203207	1	1	7	0	1	0	0	0	0	0	0	0	1507	812	28	3		3	BRCA1	17	41203207	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	240449	41203207	39992003	922	7146											
NBR1	4077	broad.mit.edu	37	chr17	41346273	41346273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttttaaaatatggagGtacagcagcgtttttatttt	8	3	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41346273	T	T	41346273	1	4	7	0	1	0	0	0	0	0	0	0	10295	1276	44	3		3	NBR1	17	41346273	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	143066	41346273	39848937	923	7147											
C17orf53	78995	broad.mit.edu	37	chr17	42232034	42232034	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttcaaggaccccacgggTaaggaattaggtcctaggtt	12	8	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42232034	A	A	42232034	5	1	7	1	0	0	0	0	0	0	1	0	1878	1652	57	5	1585	5	C17orf53	17	42232034	Splice_Site	SNP	T	TCGA-05-4390-01A-02D-1753-08	885761	42232034	38963176	924	7148											
ATXN7L3	56970	broad.mit.edu	37	chr17	42274678	42274678	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcgggaggcggcaatgcTgcgactgcaattggggcaaa	16	8	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42274678	C	C	42274678	3	2	7	1	0	0	0	0	1	0	0	0	1222	1580	55	5	830	5	ATXN7L3	17	42274678	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	42644	42274678	38920532	925	7149											
FMNL1	752	broad.mit.edu	37	chr17	43321390	43321390	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacagcccagctgctcatgCcggtgtgggcggagcgggca	16	13	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43321390	T	T	43321390	3	4	7	1	0	0	0	0	1	0	0	0	6009	739	26	4	2516	4	FMNL1	17	43321390	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1046712	43321390	37873820	926	7150											
OSBPL7	114881	broad.mit.edu	37	chr17	45890824	45890824	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acggggccgccaccccaagcAagcaaagtatgggatcttgg	13	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45890824	T	T	45890824	1	4	7	0	1	0	0	0	0	0	0	0	11376	145	5	5		5	OSBPL7	17	45890824	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2569434	45890824	35304386	927	7151											
HOXB2	3212	broad.mit.edu	37	chr17	46622233	46622233	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcggcgagcgacggctggCtgtttataaacccaatctcc	10	13	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46622233	T	T	46622233	3	4	7	1	0	0	0	0	1	0	0	0	7368	797	28	4	1037	4	HOXB2	17	46622233	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	731409	46622233	34572977	928	7152											
HOXB13	10481	broad.mit.edu	37	chr17	46804458	46804458	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtcagatacccacccatGcagacccaggccttgcaagc	9	15	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46804458	A	A	46804458	1	1	7	0	1	0	0	0	0	0	0	0	7367	1334	46	4		4	HOXB13	17	46804458	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	182225	46804458	34390752	929	7153											
SLC35B1	10237	broad.mit.edu	37	chr17	47785174	47785174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgcagccggtcgggcaCcagggagctgctagaggcca	17	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47785174	A	A	47785174	3	1	7	1	0	0	0	0	1	0	0	0	14689	507	18	3	982	3	SLC35B1	17	47785174	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	980716	47785174	33410036	930	7154											
BRIP1	83990	broad.mit.edu	37	chr17	59760697	59760697	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcctttatttttggaaggaGatggtttaaagttctttatt	9	3	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59760697	A	A	59760697	3	1	7	1	0	0	0	0	1	0	0	0	1523	942	33	4	43	4	BRIP1	17	59760697	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	11975523	59760697	21434513	931	7155											
TTYH2	94015	broad.mit.edu	37	chr17	72218552	72218552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggggcactcagggccCaagggcagggcacttccaga	16	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72218552	A	A	72218552	1	1	7	0	1	0	0	0	0	0	0	0	16866	609	21	2		2	TTYH2	17	72218552	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	12457855	72218552	8976658	932	7156											
KIF19	124602	broad.mit.edu	37	chr17	72337971	72337971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgacctcatcagggcccGgggttcccaggtgaccgtgg	16	12	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72337971	T	T	72337971	1	4	7	0	1	0	0	0	0	0	0	0	8352	1131	39	1		1	KIF19	17	72337971	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	119419	72337971	8857239	933	7157											
USP36	57602	broad.mit.edu	37	chr17	76831480	76831480	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggagtcctgcgcccacGcggaagacccgctcccacct	11	17	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76831480	A	A	76831480	2	1	7	1	0	0	0	0	0	0	0	1	17194	1074	38	4		4	USP36	17	76831480	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	4493509	76831480	4363730	934	7158											
BAHCC1	57597	broad.mit.edu	37	chr17	79419698	79419698	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcggctggaaccttgtcGgggagctgggttgtgcatga	16	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79419698	T	T	79419698	1	4	7	0	1	0	0	0	0	0	0	0	1301	1131	39	1		1	BAHCC1	17	79419698	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2588218	79419698	1775512	935	7159											
NPLOC4	55666	broad.mit.edu	37	chr17	79564458	79564458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccgaggcaggagaatcaCgaggttaagagatcgagacc	15	8	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79564458	A	A	79564458	1	1	7	0	1	0	0	0	0	0	0	0	10681	551	19	3		3	NPLOC4	17	79564458	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	144760	79564458	1630752	936	7160											
HEXDC	284004	broad.mit.edu	37	chr17	80399861	80399861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactagagagcagagggtgaGcccctagttgtaaaaggccc	13	9	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80399861	T	T	80399861	1	4	7	0	1	0	0	0	0	0	0	0	7142	986	34	3		3	HEXDC	17	80399861	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	835403	80399861	795349	937	7161											
LAMA1	284217	broad.mit.edu	37	chr18	6986440	6986440	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatttttacgtatttatgcCtagtctctttttgaaattgt	5	5	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6986440	T	T	6986440	1	4	7	0	1	0	0	0	0	0	0	0	8677	696	24	4		4	LAMA1	18	6986440	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08		6986440	71090808	938	7162											
LAMA1	284217	broad.mit.edu	37	chr18	7008579	7008579	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagcttttcagcctttcTgccaacctccattgaaatgt	7	12	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7008579	A	A	7008579	4	1	7	1	0	0	0	0	0	1	0	0	8677	1588	55	5	5341	5	LAMA1	18	7008579	Nonsense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	22139	7008579	71068669	939	7163											
LAMA1	284217	broad.mit.edu	37	chr18	7023336	7023336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagggaacacaagattcgCcaggcactgttgggtttcca	11	11	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7023336	A	A	7023336	3	1	7	1	0	0	0	0	1	0	0	0	8677	739	26	3	6879	3	LAMA1	18	7023336	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	14757	7023336	71053912	940	7164											
CEP192	55125	broad.mit.edu	37	chr18	13030600	13030600	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatgaatgaagacttcagAtctggttgtaagtatatgga	12	3	2	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13030600	T	T	13030600	3	4	7	1	0	0	0	0	1	0	0	0	3281	330	12	5	1565	5	CEP192	18	13030600	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	6007264	13030600	65046648	941	7165											
C18orf1	753	broad.mit.edu	37	chr18	13612659	13612659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggatgctttgaacgtggGggggctgcgtcacagttgga	18	6	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13612659	T	T	13612659	1	4	7	0	1	0	0	0	0	0	0	0	1912	1247	43	2		2	C18orf1	18	13612659	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	582059	13612659	64464589	942	7166											
C18orf1	753	broad.mit.edu	37	chr18	13645402	13645402	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatttaatagacattgctAtgtatagcgggggtccatgc	12	6	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13645402	C	C	13645402	3	2	7	1	0	0	0	0	1	0	0	0	1912	449	16	5	766	5	C18orf1	18	13645402	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	32743	13645402	64431846	943	7167											
RNMT	8731	broad.mit.edu	37	chr18	13731472	13731484	+	Splice_Site	DEL	TAGTGTTGGTTCA	-	-													taccaatttttttcctattcTagtgttggttcatgaagttt							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13731484	-	-	13731472	8	5	7	1	0	1	0	1	0	0	1	0	13617	1537	53	0		0	RNMT	18	13731472	Splice_Site	DEL	TAGTGTTGGTTCA	TCGA-05-4390-01A-02D-1753-08	86070	13731472	64345776	944	7168											
POTEC	388468	broad.mit.edu	37	chr18	14523296	14523296	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctagggtttgtatctcttGaaaactcaatgtacagaact	7	8	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14523296	C	C	14523296	1	2	7	0	1	0	0	0	0	0	0	0	12358	1305	45	4		4	POTEC	18	14523296	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	791824	14523296	63553952	945	7169											
LAMA3	3909	broad.mit.edu	37	chr18	21508618	21508618	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcctcattctccagaggAggacaattgagtttcactga	9	10	4	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21508618	C	C	21508618	2	2	7	1	0	0	0	0	0	0	0	1	8679	291	11	5		5	LAMA3	18	21508618	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	6985322	21508618	56568630	946	7170											
ZNF521	25925	broad.mit.edu	37	chr18	22805191	22805191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattctgcagcaaagtttcCatagtgtaggctgccccaca	9	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805191	A	A	22805191	3	1	7	1	0	0	0	0	1	0	0	0	18092	594	21	2	1264	2	ZNF521	18	22805191	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1296573	22805191	55272057	947	7171											
DSG2	1829	broad.mit.edu	37	chr18	29099836	29099836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcggcaaaagcgcgcctGgatcaccgcccccgtggctc	13	16	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29099836	T	T	29099836	3	4	7	1	0	0	0	0	1	0	0	0	4817	1357	47	2	162	2	DSG2	18	29099836	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	6294645	29099836	48977412	948	7172											
ASXL3	80816	broad.mit.edu	37	chr18	31323007	31323007	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgggcccaacaagctcgGgcccagcgagaggctgctgc	15	16	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323007	T	T	31323007	2	4	7	1	0	0	0	0	0	0	0	1	1072	1219	43	2		2	ASXL3	18	31323007	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	2223171	31323007	46754241	949	7173											
C18orf21	83608	broad.mit.edu	37	chr18	33552791	33552791	+	Intron	DEL	G	-	-													aagaggactggaggggaagcGggaggcgagcgggtaggtgt							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33552791	-	-	33552791	6	5	7	0	1	1	0	1	0	0	0	0	1915	1131	39	0		0	C18orf21	18	33552791	Intron	DEL	G	TCGA-05-4390-01A-02D-1753-08	2229784	33552791	44524457	950	7174											
SLC14A2	8170	broad.mit.edu	37	chr18	43247835	43247835	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagttctttgactgggtcctCcgaggcacatctcaagtgat	10	11	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43247835	A	A	43247835	2	1	7	1	0	0	0	0	0	0	0	1	14510	842	30	3		3	SLC14A2	18	43247835	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	9695044	43247835	34829413	951	7175											
SMAD2	4087	broad.mit.edu	37	chr18	45395559	45395559	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacaagagtacttaaatatActgaagttcaggcatttaat	6	6	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45395559	T	T	45395559	1	4	7	0	1	0	0	0	0	0	0	0	14872	406	14	5		5	SMAD2	18	45395559	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2147724	45395559	32681689	952	7176											
LIPG	9388	broad.mit.edu	37	chr18	47108730	47108730	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgttctgctgtcactgcAgtttaccattatcagatgaa	7	9	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47108730	T	T	47108730	5	4	7	1	0	0	0	0	0	0	1	0	8896	202	7	5	1061	5	LIPG	18	47108730	Splice_Site	SNP	A	TCGA-05-4390-01A-02D-1753-08	1713171	47108730	30968518	953	7177											
MYO5B	4645	broad.mit.edu	37	chr18	47455928	47455928	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgaatcgtctccaacacccCgcaggctctgagttgctgca	9	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47455928	G	G	47455928	3	3	7	1	0	0	0	0	1	0	0	0	10173	652	23	4	3598	4	MYO5B	18	47455928	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	347198	47455928	30621320	954	7178											
MAPK4	5596	broad.mit.edu	37	chr18	48256146	48256147	+	Missense_Mutation	DNP	CG	TC	TC													ctgccggacaataaactgggCgacctcaatggtgcgtgcat							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	48256147	TC	TC	48256146	3	4	7	1	0	0	0	0	1	0	0	0	9372	755	27	4	1704	4	MAPK4	18	48256146	Missense_Mutation	DNP	CG	TCGA-05-4390-01A-02D-1753-08	800218	48256146	29821102	955	7179											
DCC	1630	broad.mit.edu	37	chr18	50589497	50589497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgtttaactgcatttggGggaacaaaagatttgtttta	9	4	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50589497	T	T	50589497	1	4	7	0	1	0	0	0	0	0	0	0	4315	1247	43	2		2	DCC	18	50589497	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2333351	50589497	27487751	956	7180											
TCF4	6925	broad.mit.edu	37	chr18	52943004	52943004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaaaggacaaagacaacCatgactttctgaggcattca	8	9	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52943004	A	A	52943004	1	1	7	0	1	0	0	0	0	0	0	0	15817	609	21	2		2	TCF4	18	52943004	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2353507	52943004	25134244	957	7181											
TCF4	6925	broad.mit.edu	37	chr18	53018002	53018002	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccaaattttatggttttcTtggggtgggaggtaggatgg	16	3	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53018002	C	C	53018002	1	2	7	0	1	0	0	0	0	0	0	0	15817	1624	56	5		5	TCF4	18	53018002	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	74998	53018002	25059246	958	7182											
ALPK2	115701	broad.mit.edu	37	chr18	56184325	56184325	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgcagctcctccgtggCgatctgaccacgcaggcggc	13	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56184325	T	T	56184325	3	4	7	1	0	0	0	0	1	0	0	0	545	768	27	4	777	4	ALPK2	18	56184325	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3166323	56184325	21892923	959	7183											
CCBE1	147372	broad.mit.edu	37	chr18	57103004	57103004	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgtatttggaagaagaggAgtggagagacgtcaggagaa	16	3	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57103004	C	C	57103004	1	2	7	0	1	0	0	0	0	0	0	0	2757	319	11	5		5	CCBE1	18	57103004	3'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	918679	57103004	20974244	960	7184											
CDH20	28316	broad.mit.edu	37	chr18	59170467	59170467	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattcaattatccatagAttcctttcttacattcatca	1	9	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59170467	T	T	59170467	1	4	7	0	1	0	0	0	0	0	0	0	3136	348	12	5		5	CDH20	18	59170467	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2067463	59170467	18906781	961	7185											
CDH20	28316	broad.mit.edu	37	chr18	59195340	59195340	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagacgtggacgagccCcctgtgtttgaacctggctt	14	10	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59195340	A	A	59195340	2	1	7	1	0	0	0	0	0	0	0	1	3136	610	22	2		2	CDH20	18	59195340	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	24873	59195340	18881908	962	7186											
SERPINB4	6318	broad.mit.edu	37	chr18	61328204	61328204	+	Intron	DEL	C	-	-													ctgtgctacccatcagaccaCcacatctattaccatctgcg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61328204	-	-	61328204	6	5	7	0	1	1	0	1	0	0	0	0	14216	522	18	0		0	SERPINB4	18	61328204	Intron	DEL	C	TCGA-05-4390-01A-02D-1753-08	2132864	61328204	16749044	963	7187											
SERPINB7	8710	broad.mit.edu	37	chr18	61460397	61460397	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatctttttaataacagtcAgggctccagtctcaactgaa	6	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61460397	T	T	61460397	2	4	7	1	0	0	0	0	0	0	0	1	14219	175	7	5		5	SERPINB7	18	61460397	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	132193	61460397	16616851	964	7188											
SERPINB2	5055	broad.mit.edu	37	chr18	61568874	61568874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgaagattaacaactctGcaatttgaagaatttagttt	7	5	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61568874	T	T	61568874	1	4	7	0	1	0	0	0	0	0	0	0	14214	1334	46	3		3	SERPINB2	18	61568874	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	108477	61568874	16508374	965	7189											
DOK6	220164	broad.mit.edu	37	chr18	67406372	67406372	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtaacctatcagcttGgaaatgaatgtcactgggat	10	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67406372	A	A	67406372	1	1	7	0	1	0	0	0	0	0	0	0	4741	1363	47	4		4	DOK6	18	67406372	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	5837498	67406372	10670876	966	7190											
NETO1	81832	broad.mit.edu	37	chr18	70417782	70417782	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgataatgaggatgatcacGatgcaggaagtcacgccaat	11	7	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70417782	C	C	70417782	3	2	7	1	0	0	0	0	1	0	0	0	10434	1048	37	4	553	4	NETO1	18	70417782	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3011410	70417782	7659466	967	7191											
CTDP1	9150	broad.mit.edu	37	chr18	77455387	77455388	+	Intron	DNP	GG	TT	TT													ggagtccgagaagctgtgctGggaacacagtgaggcccttg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	77455388	TT	TT	77455387	1	4	7	0	1	0	0	0	0	0	0	0	4036	1363	47	2		2	CTDP1	18	77455387	Intron	DNP	GG	TCGA-05-4390-01A-02D-1753-08	7037605	77455387	621861	968	7192											
CTDP1	9150	broad.mit.edu	37	chr18	77513613	77513613	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacccggcgttgtgcgtTtgccacaagcatctcacacc	11	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77513613	C	C	77513613	1	2	7	0	1	0	0	0	0	0	0	0	4036	1856	64	5		5	CTDP1	18	77513613	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	58226	77513613	563635	969	7193											
MIER2	54531	broad.mit.edu	37	chr19	336131	336131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcacaggctgtgctcgaGgcaggagaccacgcgaggac	17	11	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	336131	T	T	336131	3	4	7	1	0	0	0	0	1	0	0	0	9674	1000	35	2	1637	2	MIER2	19	336131	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08		336131	58792852	970	7194											
MED16	10025	broad.mit.edu	37	chr19	881589	881589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaactgtgtgtcgctggCcaccttgaggtcggtgttgg	16	8	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	881589	A	A	881589	3	1	7	1	0	0	0	0	1	0	0	0	9527	739	26	3	1562	3	MED16	19	881589	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	545458	881589	58247394	971	7195											
SEMA6B	10501	broad.mit.edu	37	chr19	4551004	4551004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccccatctcggacaagtgCgtgcaggagcctctgtctgc	13	14	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4551004	G	G	4551004	1	3	7	0	1	0	0	0	0	0	0	0	14153	783	27	4		4	SEMA6B	19	4551004	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3669415	4551004	54577979	972	7196											
KDM4B	23030	broad.mit.edu	37	chr19	5070977	5070977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggacacccccttgcgtgGctgccaccgatcttgcctct	10	17	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5070977	T	T	5070977	1	4	7	0	1	0	0	0	0	0	0	0	8199	1218	42	3		3	KDM4B	19	5070977	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	519973	5070977	54058006	973	7197											
GTF2F1	2962	broad.mit.edu	37	chr19	6380419	6380419	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcttcttggtctggaacTttttcagcaggtccttagtg	10	9	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6380419	G	G	6380419	3	3	7	1	0	0	0	0	1	0	0	0	6923	1609	56	5	130	5	GTF2F1	19	6380419	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	1309442	6380419	52748564	974	7198											
VAV1	7409	broad.mit.edu	37	chr19	6773061	6773061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgctgagggttggagaCgggggtcctccccggggctg	21	9	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6773061	A	A	6773061	1	1	7	0	1	0	0	0	0	0	0	0	17258	551	19	3		3	VAV1	19	6773061	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	392642	6773061	52355922	975	7199											
FBN3	84467	broad.mit.edu	37	chr19	8167876	8167876	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agattactggcttgtccaggCacagtggctcatgcctgtaa	11	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8167876	G	G	8167876	1	3	7	0	1	0	0	0	0	0	0	0	5761	725	25	4		4	FBN3	19	8167876	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1394815	8167876	50961107	976	7200											
ADAMTS10	81794	broad.mit.edu	37	chr19	8656874	8656875	+	Frame_Shift_Ins	INS	-	G	G													agtgacggctagaagaggacINSacgccgccgccacaggtccg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8656875	G	G	8656874	7	5	7	1	0	1	1	0	0	0	0	0	256	465	17	0	1662	0	ADAMTS10	19	8656874	Frame_Shift_Ins	INS	-	TCGA-05-4390-01A-02D-1753-08	488998	8656874	50472109	977	7201											
KEAP1	9817	broad.mit.edu	37	chr19	10602235	10602235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaccctccgagcccacccCcaggccctgccactcacctc	7	23	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602235	A	A	10602235	1	1	7	0	1	0	0	0	0	0	0	0	8211	638	22	2		2	KEAP1	19	10602235	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1945361	10602235	48526748	978	7202											
MAST1	22983	broad.mit.edu	37	chr19	12963015	12963015	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgaagacggacatcccCcgctacatcatccgccagct	8	16	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12963015	A	A	12963015	2	1	7	1	0	0	0	0	0	0	0	1	9416	610	22	2		2	MAST1	19	12963015	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2360780	12963015	46165968	979	7203											
BST2	684	broad.mit.edu	37	chr19	17515091	17515091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagaacctcccccttaccCcaacctccagccctggtctc	5	21	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17515091	A	A	17515091	1	1	7	0	1	0	0	0	0	0	0	0	1543	638	22	2		2	BST2	19	17515091	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4552076	17515091	41613892	980	7204											
FAM129C	199786	broad.mit.edu	37	chr19	17644372	17644372	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttcagacctgtcccaggtTggttctctgggtaccttttg	11	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17644372	A	A	17644372	1	1	7	0	1	0	0	0	0	0	0	0	5484	1827	63	5		5	FAM129C	19	17644372	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	129281	17644372	41484611	981	7205											
ZNF90	7643	broad.mit.edu	37	chr19	20235986	20235986	+	RNA	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagatgactgagccgcGcatgctacaatacgagctgc	12	12	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20235986	T	T	20235986	1	4	7	0	1	0	0	0	0	0	0	0	18328	1102	38	3		3	ZNF90	19	20235986	RNA	SNP	G	TCGA-05-4390-01A-02D-1753-08	2591614	20235986	38892997	982	7206											
ZNF626	199777	broad.mit.edu	37	chr19	20808333	20808333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacactcatccacacttataCatcctttttttaactgtaaa	1	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20808333	A	A	20808333	3	1	7	1	0	0	0	0	1	0	0	0	18177	478	17	3	1240	3	ZNF626	19	20808333	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	572347	20808333	38320650	983	7207											
ZNF100	163227	broad.mit.edu	37	chr19	21909726	21909726	+	Frame_Shift_Del	DEL	C	-	-													aggaccggttaaaggctttgCcacattcgtcacatttgtag							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21909726	-	-	21909726	7	5	7	1	0	1	0	1	0	0	0	0	17839	739	26	0	244	0	ZNF100	19	21909726	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	1101393	21909726	37219257	984	7208											
CD22	933	broad.mit.edu	37	chr19	35832490	35832499	+	Frame_Shift_Del	DEL	CTGGACACTT	-	-													ggacagacagcgtccaaggcCtggacacttgaagtgctgtg					rs141451390		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35832499	-	-	35832490	7	5	7	1	0	1	0	1	0	0	0	0	3015	668	24	0	1778	0	CD22	19	35832490	Frame_Shift_Del	DEL	CTGGACACTT	TCGA-05-4390-01A-02D-1753-08	13922764	35832490	23296493	985	7209											
ATP4A	495	broad.mit.edu	37	chr19	36046249	36046249	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcgcaccctgcaggcagtgGgtgcaggtggtgggtgggtg	20	8	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36046249	C	C	36046249	1	2	7	0	1	0	0	0	0	0	0	0	1149	1247	43	4		4	ATP4A	19	36046249	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	213759	36046249	23082734	986	7210											
KIRREL2	84063	broad.mit.edu	37	chr19	36357499	36357499	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accttactcctccaaaactgAacacaaggggagggaaagat	9	10	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36357499	T	T	36357499	1	4	7	0	1	0	0	0	0	0	0	0	8396	261	9	5		5	KIRREL2	19	36357499	3'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	311250	36357499	22771484	987	7211											
ZFP30	22835	broad.mit.edu	37	chr19	38126960	38126960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagccttcccacattccCcacattcgtagggtttctct	5	14	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38126960	A	A	38126960	3	1	7	1	0	0	0	0	1	0	0	0	17770	623	22	2	1081	2	ZFP30	19	38126960	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1769461	38126960	21002023	988	7212											
ZNF607	84775	broad.mit.edu	37	chr19	38200828	38200828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactttgggaggccgaggCgggcagatcatgaggtcaag	17	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38200828	A	A	38200828	1	1	7	0	1	0	0	0	0	0	0	0	18160	783	27	3		3	ZNF607	19	38200828	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	73868	38200828	20928155	989	7213											
RYR1	6261	broad.mit.edu	37	chr19	38995661	38995661	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgatcatcccggagaaGctggactccttcattaacaa	9	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38995661	A	A	38995661	2	1	7	1	0	0	0	0	0	0	0	1	13879	962	34	4		4	RYR1	19	38995661	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	794833	38995661	20133322	990	7214											
MAP3K10	4294	broad.mit.edu	37	chr19	40710446	40710446	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggtcccctaccgtgagatCgacgccttggccgtggcgta	14	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40710446	T	T	40710446	2	4	7	1	0	0	0	0	0	0	0	1	9336	874	31	4		4	MAP3K10	19	40710446	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1714785	40710446	18418537	991	7215											
HNRNPUL1	11100	broad.mit.edu	37	chr19	41812558	41812558	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctgcccccgccagatccCgtggtgctggggatggggtc	15	15	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41812558	T	T	41812558	1	4	7	0	1	0	0	0	0	0	0	0	7341	667	23	4		4	HNRNPUL1	19	41812558	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	1102112	41812558	17316425	992	7216											
PSG1	5669	broad.mit.edu	37	chr19	43348611	43348611	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctttgtagtaatttggggGataaagagcttttgttctga	12	3	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43348611	A	A	43348611	1	1	7	0	1	0	0	0	0	0	0	0	12759	1189	41	4		4	PSG1	19	43348611	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	1536053	43348611	15780372	993	7217											
PSG6	5675	broad.mit.edu	37	chr19	43430241	43430241	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggggatgctcctggtcTcttaaagggacagagtgacc	15	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43430241	C	C	43430241	1	2	7	0	1	0	0	0	0	0	0	0	12765	1566	54	5		5	PSG6	19	43430241	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	81630	43430241	15698742	994	7218											
PSG9	5678	broad.mit.edu	37	chr19	43763045	43763045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgggttactgcggaggcCaccatatcggtcccgtattt	12	11	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43763045	A	A	43763045	3	1	7	1	0	0	0	0	1	0	0	0	12768	594	21	2	340	2	PSG9	19	43763045	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	332804	43763045	15365938	995	7219											
CD177	57126	broad.mit.edu	37	chr19	43865557	43865557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtggccagctgctctgaGcacaaagtcatgtaccccca	10	13	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43865557	T	T	43865557	1	4	7	0	1	0	0	0	0	0	0	0	3001	986	34	3		3	CD177	19	43865557	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	102512	43865557	15263426	996	7220											
PLAUR	5329	broad.mit.edu	37	chr19	44171830	44171830	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttacactgcatgcaccgCaggccccaagaggctggggg	14	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44171830	A	A	44171830	2	1	7	1	0	0	0	0	0	0	0	1	12118	697	25	3		3	PLAUR	19	44171830	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	306273	44171830	14957153	997	7221											
ZNF223	7766	broad.mit.edu	37	chr19	44570525	44570525	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattcctgtgatgagtgtGgaaaaagcttctgttacatc	9	8	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44570525	T	T	44570525	4	4	7	1	0	0	0	0	0	1	0	0	17903	1349	47	2	558	2	ZNF223	19	44570525	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	398695	44570525	14558458	998	7222											
ZNF234	10780	broad.mit.edu	37	chr19	44662182	44662182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaatcttgtaagtcatcaCaaaattcatgctgctggtac	6	9	5	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44662182	A	A	44662182	3	1	7	1	0	0	0	0	1	0	0	0	17913	477	17	3	2027	3	ZNF234	19	44662182	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	91657	44662182	14466801	999	7223											
ZNF227	7770	broad.mit.edu	37	chr19	44739572	44739572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatagatgcgacagttgcgGcaagggattcagtagcagca	13	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44739572	T	T	44739572	3	4	7	1	0	0	0	0	1	0	0	0	17907	1203	42	3	1003	3	ZNF227	19	44739572	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	77390	44739572	14389411	1000	7224											
EXOC3L2	90332	broad.mit.edu	37	chr19	45731047	45731047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctggtgggaggaaaggGgacagatagggcgccactgg	20	6	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45731047	T	T	45731047	1	4	7	0	1	0	0	0	0	0	0	0	5347	1247	43	2		2	EXOC3L2	19	45731047	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	991475	45731047	13397936	1001	7225											
GIPR	2696	broad.mit.edu	37	chr19	46173868	46173868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgggggtcggtctgggggGgtcctcccttctttcttttc	15	11	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46173868	T	T	46173868	1	4	7	0	1	0	0	0	0	0	0	0	6459	1247	43	2		2	GIPR	19	46173868	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	442821	46173868	12955115	1002	7226											
PGLYRP1	8993	broad.mit.edu	37	chr19	46526132	46526132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcgtaagggcaggctcaGgtgctgggcgcactctgatg	16	9	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46526132	T	T	46526132	3	4	7	1	0	0	0	0	1	0	0	0	11888	991	35	2	454	2	PGLYRP1	19	46526132	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	352264	46526132	12602851	1003	7227											
DHX34	9704	broad.mit.edu	37	chr19	47879067	47879067	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcctcatttcaggagcCgggtttccatggacggtgct	12	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47879067	T	T	47879067	1	4	7	0	1	0	0	0	0	0	0	0	4547	667	23	4		4	DHX34	19	47879067	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1352935	47879067	11249916	1004	7228											
GRWD1	83743	broad.mit.edu	37	chr19	48956135	48956135	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgacgtggaggccgacccCggactggccgacctcccgca	15	17	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48956135	T	T	48956135	2	4	7	1	0	0	0	0	0	0	0	1	6877	639	23	4		4	GRWD1	19	48956135	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	1077068	48956135	10172848	1005	7229											
PPP1R15A	23645	broad.mit.edu	37	chr19	49376608	49376608	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagccgcctgaggggcctgGgacctctagagccctggctg	17	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49376608	T	T	49376608	4	4	7	1	0	0	0	0	0	1	0	0	12464	1233	43	2	120	2	PPP1R15A	19	49376608	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	420473	49376608	9752375	1006	7230											
MYH14	79784	broad.mit.edu	37	chr19	50721154	50721154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactctgtagggcttcttaGggggctggagggagcacaag	17	7	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50721154	T	T	50721154	1	4	7	0	1	0	0	0	0	0	0	0	10127	1015	35	2		2	MYH14	19	50721154	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1344546	50721154	8407829	1007	7231											
KLK1	3816	broad.mit.edu	37	chr19	51323520	51323520	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catctgtgatggtatcagcaGgctctgtcaggcggagcagc	14	10	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51323520	C	C	51323520	3	2	7	1	0	0	0	0	1	0	0	0	8468	1000	35	4	414	4	KLK1	19	51323520	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	602366	51323520	7805463	1008	7232											
KLK2	3817	broad.mit.edu	37	chr19	51377941	51377941	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcccctatccaattcttttGggtctgatccccctgaccca	5	17	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51377941	C	C	51377941	1	2	7	0	1	0	0	0	0	0	0	0	8475	1363	47	4		4	KLK2	19	51377941	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	54421	51377941	7751042	1009	7233											
KLK2	3817	broad.mit.edu	37	chr19	51380061	51380061	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggagcccagatgcctgggtCtgagggaagtggggccaaag	19	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51380061	A	A	51380061	1	1	7	0	1	0	0	0	0	0	0	0	8475	928	32	3		3	KLK2	19	51380061	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2120	51380061	7748922	1010	7234											
SIGLEC6	946	broad.mit.edu	37	chr19	52023450	52023450	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgctcatcttctgagatGgggccagcctcagcagggtg	13	12	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52023450	T	T	52023450	2	4	7	1	0	0	0	0	0	0	0	1	14425	1335	47	2		2	SIGLEC6	19	52023450	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	643389	52023450	7105533	1011	7235											
SIGLEC6	946	broad.mit.edu	37	chr19	52031048	52031048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcatccgtgttttgcaCtggctgggctgctttcttcc	9	13	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52031048	A	A	52031048	3	1	7	1	0	0	0	0	1	0	0	0	14425	565	20	3	228	3	SIGLEC6	19	52031048	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	7598	52031048	7097935	1012	7236											
ZNF614	80110	broad.mit.edu	37	chr19	52521542	52521542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaacaccacagtgactgtAaagctttgattaggtgagca	9	9	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52521542	G	G	52521542	1	3	7	0	1	0	0	0	0	0	0	0	18166	377	13	5		5	ZNF614	19	52521542	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	490494	52521542	6607441	1013	7237											
VN1R2	317701	broad.mit.edu	37	chr19	53762292	53762292	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctgggccttccacatgCtggtaaatgccatttttcct	9	11	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53762292	G	G	53762292	3	3	7	1	0	0	0	0	1	0	0	0	17306	796	28	4	666	4	VN1R2	19	53762292	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1240750	53762292	5366691	1014	7238											
CACNG6	59285	broad.mit.edu	37	chr19	54515480	54515480	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctaagcaaccaccgagcCctttgaccttctccattgta	5	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54515480	G	G	54515480	1	3	7	0	1	0	0	0	0	0	0	0	2587	638	22	4		4	CACNG6	19	54515480	3'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	753188	54515480	4613503	1015	7239											
LILRB2	10288	broad.mit.edu	37	chr19	54778967	54778967	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccttgagtccccctgacctCctggagtcaattttcctcac	6	16	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54778967	G	G	54778967	1	3	7	0	1	0	0	0	0	0	0	0	8863	870	30	4		4	LILRB2	19	54778967	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	263487	54778967	4350016	1016	7240											
LILRB2	10288	broad.mit.edu	37	chr19	54783311	54783311	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcgggctcacggggcccaCggagaagatggcgcgggacg	18	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54783311	T	T	54783311	3	4	7	1	0	0	0	0	1	0	0	0	8863	536	19	4	1289	4	LILRB2	19	54783311	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	4344	54783311	4345672	1017	7241											
LAIR1	3903	broad.mit.edu	37	chr19	54868260	54868260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacaggatttcagcagtGtgcatttattgagcacctac	9	8	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54868260	T	T	54868260	1	4	7	0	1	0	0	0	0	0	0	0	8674	1392	48	3		3	LAIR1	19	54868260	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	84949	54868260	4260723	1018	7242											
LAIR2	3904	broad.mit.edu	37	chr19	55014160	55014160	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacacctcactgctctccTgggcctaggtgagtcctgga	10	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55014160	C	C	55014160	3	2	7	1	0	0	0	0	1	0	0	0	8675	1580	55	5	28	5	LAIR2	19	55014160	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	145900	55014160	4114823	1019	7243											
KIR3DL1	3811	broad.mit.edu	37	chr19	55340893	55340893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcttctttctcCttcatctctggtgctccaac	3	18	5	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55340893	A	A	55340893	3	1	7	1	0	0	0	0	1	0	0	0	8391	681	24	2	1104	2	KIR3DL1	19	55340893	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	326733	55340893	3788090	1020	7244											
KIR3DL1	3811	broad.mit.edu	37	chr19	55346505	55346505	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgtttgcctgcaaatGgatcttccatcatgatcttt	8	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55346505	C	C	55346505	1	2	7	0	1	0	0	0	0	0	0	0	8391	1363	47	4		4	KIR3DL1	19	55346505	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	5612	55346505	3782478	1021	7245											
NLRP7	199713	broad.mit.edu	37	chr19	55452723	55452723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagccttacactccagcCtgggcgacagaacgagactc	9	16	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55452723	A	A	55452723	1	1	7	0	1	0	0	0	0	0	0	0	10577	696	24	2		2	NLRP7	19	55452723	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	106218	55452723	3676260	1022	7246											
SAPS1	22870	broad.mit.edu	37	chr19	55753604	55753604	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgacagactggctctgctCcccctcgaacatgttgctta	9	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55753604	A	A	55753604	4	1	7	1	0	0	0	0	0	1	0	0	13948	864	30	3	1942	3	SAPS1	19	55753604	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	300881	55753604	3375379	1023	7247											
NLRP13	126204	broad.mit.edu	37	chr19	56410252	56410252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattatgattatggctgagGgcattagccagctctccaca	9	10	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56410252	T	T	56410252	2	4	7	1	0	0	0	0	0	0	0	1	10570	1219	43	2		2	NLRP13	19	56410252	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	656648	56410252	2718731	1024	7248											
NLRP13	126204	broad.mit.edu	37	chr19	56424608	56424608	+	Nonsense_Mutation	SNP	C	T	T													taggccaactgatgttgtccCatgtctccagtagttcagcc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56424608	T	T	56424608	4	4	7	1	0	0	0	0	0	1	0	0	10570	595	21	4	2582	4	NLRP13	19	56424608	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	14356	56424608	2704375	1025	7249	27	2									
NLRP13	126204	broad.mit.edu	37	chr19	56424611	56424611	+	Missense_Mutation	SNP	G	T	T													gccaactgatgttgtcccatGtctccagtagttcagccttc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56424611	T	T	56424611	3	4	7	1	0	0	0	0	1	0	0	0	10570	1377	48	3	2585	3	NLRP13	19	56424611	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3	56424611	2704372	1026	7250	27	2									
NLRP8	126205	broad.mit.edu	37	chr19	56459432	56459432	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccatgaggagctacaacGgttcaagcagctcttactga	11	10	2	2	rs145268550		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56459432	A	A	56459432	3	1	7	1	0	0	0	0	1	0	0	0	10578	1116	39	4	166	4	NLRP8	19	56459432	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	34821	56459432	2669551	1027	7251											
NLRP5	126206	broad.mit.edu	37	chr19	56539728	56539728	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaacagcttccaagaagTgtggcttccgattaaccaga	8	9	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56539728	G	G	56539728	3	3	7	1	0	0	0	0	1	0	0	0	10575	1696	59	5	2155	5	NLRP5	19	56539728	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	80296	56539728	2589255	1028	7252											
NLRP5	126206	broad.mit.edu	37	chr19	56544988	56544988	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgtaacctaagatccctcaActtgggaggcacccacctga	8	15	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56544988	T	T	56544988	3	4	7	1	0	0	0	0	1	0	0	0	10575	43	2	5	2562	5	NLRP5	19	56544988	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	5260	56544988	2583995	1029	7253											
PEG3	5178	broad.mit.edu	37	chr19	57330040	57330040	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtttcctgtcctcagcgaGgtccaccacattttggtatg	10	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57330040	A	A	57330040	3	1	7	1	0	0	0	0	1	0	0	0	11814	1000	35	4	4081	4	PEG3	19	57330040	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	785052	57330040	1798943	1030	7254											
ZIM3	114026	broad.mit.edu	37	chr19	57649750	57649750	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgcgaagtgaggagcaccTctgtgccaaccctatttggc	11	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57649750	A	A	57649750	1	1	7	0	1	0	0	0	0	0	0	0	17811	1566	54	5		5	ZIM3	19	57649750	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	319710	57649750	1479233	1031	7255											
ZSCAN22	342945	broad.mit.edu	37	chr19	58849788	58849788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaggtctggactatcagGggagatctggacaaagtctg	15	6	4	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58849788	T	T	58849788	3	4	7	1	0	0	0	0	1	0	0	0	18363	1232	43	2	578	2	ZSCAN22	19	58849788	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1200038	58849788	279195	1032	7256											
ZCCHC3	85364	broad.mit.edu	37	chr20	278867	278867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccgggcagccgcgaattcGacgtgagcttccgctcagcg	13	15	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	278867	T	T	278867	3	4	7	1	0	0	0	0	1	0	0	0	17715	1058	37	3	642	3	ZCCHC3	20	278867	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08		278867	62746653	1033	7257											
TGM3	7053	broad.mit.edu	37	chr20	2321104	2321104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaccctagggcccaaggaGgggtcccgggtccgttttga	15	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2321104	T	T	2321104	3	4	7	1	0	0	0	0	1	0	0	0	15954	991	35	2	2009	2	TGM3	20	2321104	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2042237	2321104	60704416	1034	7258											
IDH3B	3420	broad.mit.edu	37	chr20	2641599	2641599	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctcccccttatactccatCggggtatgaatctttcctgt	7	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2641599	A	A	2641599	2	1	7	1	0	0	0	0	0	0	0	1	7567	871	31	3		3	IDH3B	20	2641599	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	320495	2641599	60383921	1035	7259											
PROKR2	128674	broad.mit.edu	37	chr20	5283097	5283097	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgccttgaaccagagctcCcgggagatcctggcatagca	11	13	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5283097	A	A	5283097	2	1	7	1	0	0	0	0	0	0	0	1	12659	610	22	2		2	PROKR2	20	5283097	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2641498	5283097	57742423	1036	7260											
HAO1	54363	broad.mit.edu	37	chr20	7915017	7915017	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgatagagtccatgagcTtaatgtttctgagtgtaaaa	10	4	1	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7915017	A	A	7915017	1	1	7	0	1	0	0	0	0	0	0	0	7017	1624	56	5		5	HAO1	20	7915017	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	2631920	7915017	55110503	1037	7261											
PLCB4	5332	broad.mit.edu	37	chr20	9459601	9459601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagatggtgaaattggaaGccgagatggaccgcagacca	14	8	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9459601	T	T	9459601	3	4	7	1	0	0	0	0	1	0	0	0	12125	971	34	3	3712	3	PLCB4	20	9459601	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1544584	9459601	53565919	1038	7262											
PAK7	57144	broad.mit.edu	37	chr20	9525048	9525048	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtagcctagaaatcacctCaggggccatccagtagggag	13	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9525048	A	A	9525048	4	1	7	1	0	0	0	0	0	1	0	0	11499	835	29	3	334	3	PAK7	20	9525048	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	65447	9525048	53500472	1039	7263											
PAK7	57144	broad.mit.edu	37	chr20	9560737	9560737	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaaaaggtcgtgccagcAccacccctgtggaggttttt	10	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9560737	G	G	9560737	1	3	7	0	1	0	0	0	0	0	0	0	11499	174	6	5		5	PAK7	20	9560737	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	35689	9560737	53464783	1040	7264											
TMEM90B	79953	broad.mit.edu	37	chr20	24523590	24523590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagtctgaaacaatgtggGtctgggtgattagcttgttt	12	5	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24523590	T	T	24523590	1	4	7	0	1	0	0	0	0	0	0	0	16342	1276	44	3		3	TMEM90B	20	24523590	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	14962853	24523590	38501930	1041	7265											
NINL	22981	broad.mit.edu	37	chr20	25485607	25485607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccgctgctgcccacccCcagctcttcccacacgcccc	7	23	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25485607	A	A	25485607	3	1	7	1	0	0	0	0	1	0	0	0	10515	623	22	2	3599	2	NINL	20	25485607	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	962017	25485607	37539913	1042	7266											
DEFB115	245929	broad.mit.edu	37	chr20	29845536	29845536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggccttagttgtccttGtggtcctggctcagactgcc	11	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29845536	T	T	29845536	3	4	7	1	0	0	0	0	1	0	0	0	4443	1377	48	3	72	3	DEFB115	20	29845536	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	4359929	29845536	33179984	1043	7267											
UQCC	55245	broad.mit.edu	37	chr20	33999771	33999771	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccagcaacgccatgttcCtcaataaccatttccgggtg	8	14	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33999771	A	A	33999771	1	1	7	1	0	0	0	0	0	0	0	0	17141	696	24	2		2	UQCC	20	33999771	Translation_Start_Site	SNP	C	TCGA-05-4390-01A-02D-1753-08	4154235	33999771	29025749	1044	7268											
C20orf152	140894	broad.mit.edu	37	chr20	34564066	34564066	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcaccctgggttggccacttCgtttcctcatcaataaaata	6	12	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34564066	G	G	34564066	1	3	7	0	1	0	0	0	0	0	0	0	2114	899	31	4		4	C20orf152	20	34564066	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	564295	34564066	28461454	1045	7269											
C20orf117	140710	broad.mit.edu	37	chr20	35444016	35444016	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcatgggccgcgtactcTggcaggaggcgaggtcacag	16	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35444016	G	G	35444016	3	3	7	1	0	0	0	0	1	0	0	0	2105	1580	55	5	3262	5	C20orf117	20	35444016	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	879950	35444016	27581504	1046	7270											
BLCAP	10904	broad.mit.edu	37	chr20	36158975	36158975	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgttttatcttcaccaccaGaccattccttctgtagctca	5	13	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36158975	A	A	36158975	1	1	7	0	1	0	0	0	0	0	0	0	1448	957	33	4		4	BLCAP	20	36158975	5'Flank	SNP	G	TCGA-05-4390-01A-02D-1753-08	714959	36158975	26866545	1047	7271											
PTPRT	11122	broad.mit.edu	37	chr20	40789929	40789929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatactttttgtagcaagGctttagtgcccaaataagcc	8	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40789929	T	T	40789929	1	4	7	0	1	0	0	0	0	0	0	0	12920	1218	42	3		3	PTPRT	20	40789929	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4630954	40789929	22235591	1048	7272											
GTSF1L	149699	broad.mit.edu	37	chr20	42355414	42355414	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagcccttttgtaagaagGatggagttgtcctctgccca	11	9	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42355414	A	A	42355414	1	1	7	0	1	0	0	0	0	0	0	0	6952	1189	41	4		4	GTSF1L	20	42355414	5'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	1565485	42355414	20670106	1049	7273											
ZNF335	63925	broad.mit.edu	37	chr20	44589559	44589559	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaattagaccagagcttcCccaagcccactctagaccct	7	15	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44589559	A	A	44589559	1	1	7	0	1	0	0	0	0	0	0	0	17978	638	22	2		2	ZNF335	20	44589559	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2234145	44589559	18435961	1050	7274											
SLC12A5	57468	broad.mit.edu	37	chr20	44684841	44684841	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccggagaaagaatccagCcaacacgcggctccgcctga	10	14	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44684841	T	T	44684841	3	4	7	1	0	0	0	0	1	0	0	0	14499	739	26	4	3051	4	SLC12A5	20	44684841	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	95282	44684841	18340679	1051	7275											
KCNB1	3745	broad.mit.edu	37	chr20	47989700	47989700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggtgggtaaaggggaGctttcaaagtggtttttctc	17	4	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47989700	T	T	47989700	3	4	7	1	0	0	0	0	1	0	0	0	8082	962	34	3	183	3	KCNB1	20	47989700	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3304859	47989700	15035820	1052	7276											
B4GALT5	9334	broad.mit.edu	37	chr20	48263586	48263586	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtagtttgcaggaaggTttcactgtggttcaagtcaa	12	5	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48263586	A	A	48263586	3	1	7	1	0	0	0	0	1	0	0	0	1279	1725	60	5	914	5	B4GALT5	20	48263586	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	273886	48263586	14761934	1053	7277											
FAM65C	140876	broad.mit.edu	37	chr20	49225333	49225333	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgtccccttgctgtccGcccagggccctccctgccag	12	18	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49225333	A	A	49225333	1	1	7	0	1	0	0	0	0	0	0	0	5652	1102	38	4		4	FAM65C	20	49225333	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	961747	49225333	13800187	1054	7278											
ADNP	23394	broad.mit.edu	37	chr20	49510039	49510039	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagactttaactggccCgatgagagagaagaggcatt	14	6	0	4	rs139951165		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49510039	T	T	49510039	2	4	7	1	0	0	0	0	0	0	0	1	323	639	23	4		4	ADNP	20	49510039	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	284706	49510039	13515481	1055	7279											
NFATC2	4773	broad.mit.edu	37	chr20	50139662	50139662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcggcttgggccaagtgGgcggaaccagcaggatggat	17	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50139662	T	T	50139662	3	4	7	1	0	0	0	0	1	0	0	0	10457	1232	43	2	1743	2	NFATC2	20	50139662	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	629623	50139662	12885858	1056	7280											
PFDN4	5203	broad.mit.edu	37	chr20	52831753	52831753	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgagagggtccctcagAgagttgctgtccccaaatta	11	9	1	2	rs111475492		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52831753	G	G	52831753	1	3	7	0	1	0	0	0	0	0	0	0	11852	319	11	5		5	PFDN4	20	52831753	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2692091	52831753	10193767	1057	7281											
SPO11	23626	broad.mit.edu	37	chr20	55913980	55913980	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattatagatagataaaattTgagagtgcaaattaacctgt	7	3	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55913980	C	C	55913980	1	2	7	0	1	0	0	0	0	0	0	0	15195	1827	63	5		5	SPO11	20	55913980	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	3082227	55913980	7111540	1058	7282											
CTCFL	140690	broad.mit.edu	37	chr20	56078430	56078430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagtaacactcggcaccCaggatagtcacaaccagaaa	9	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56078430	A	A	56078430	1	1	7	0	1	0	0	0	0	0	0	0	4035	609	21	2		2	CTCFL	20	56078430	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	164450	56078430	6947090	1059	7283											
CTCFL	140690	broad.mit.edu	37	chr20	56098871	56098871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaatggccacacactgctGcaggctctgccggggccctt	11	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56098871	T	T	56098871	3	4	7	1	0	0	0	0	1	0	0	0	4035	1328	46	3	1640	3	CTCFL	20	56098871	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	20441	56098871	6926649	1060	7284											
ZNF831	128611	broad.mit.edu	37	chr20	57829372	57829372	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacagcaaagtcacagaagaGggcagagcacagaccctctt	11	11	2	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57829372	C	C	57829372	3	2	7	1	0	0	0	0	1	0	0	0	18314	991	35	4	4626	4	ZNF831	20	57829372	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1730501	57829372	5196148	1061	7285											
GTPBP5	26164	broad.mit.edu	37	chr20	60776117	60776117	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagctgggccagggccgccAgccgctcaggtggtagccac	16	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60776117	T	T	60776117	3	4	7	1	0	0	0	0	1	0	0	0	6948	188	7	5	1227	5	GTPBP5	20	60776117	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	2946745	60776117	2249403	1062	7286											
TCEA2	6919	broad.mit.edu	37	chr20	62703650	62703650	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcaacctgcctgcctggAttgcacctttctgccctttc	6	18	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62703650	G	G	62703650	1	3	7	0	1	0	0	0	0	0	0	0	15790	348	12	5		5	TCEA2	20	62703650	3'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	1927533	62703650	321870	1063	7287											
TPTE	7179	broad.mit.edu	37	chr21	10916334	10916334	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagtggggacattggccctCctgcccaattcttcaattat	9	11	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10916334	T	T	10916334	1	4	7	0	1	0	0	0	0	0	0	0	16554	870	30	4		4	TPTE	21	10916334	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08		10916334	37213561	1064	7288											
TPTE	7179	broad.mit.edu	37	chr21	10971592	10971592	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtaagggtatctacacctCaaggtgtaacagcatttttg	9	7	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971592	T	T	10971592	1	4	7	0	1	0	0	0	0	0	0	0	16554	841	29	4		4	TPTE	21	10971592	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	55258	10971592	37158303	1065	7289											
BAGE2	85319	broad.mit.edu	37	chr21	11039181	11039181	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactaaggtttctagtggaaGagtgacagattcaatgacaa	10	6	2	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039181	A	A	11039181	1	1	7	0	1	0	0	0	0	0	0	0	1297	957	33	4		4	BAGE2	21	11039181	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	67589	11039181	37090714	1066	7290											
NCAM2	4685	broad.mit.edu	37	chr21	22838976	22838976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacaacttatgaaatcagGgttgcagctgtaaatggaaa	9	5	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22838976	T	T	22838976	3	4	7	1	0	0	0	0	1	0	0	0	10298	1223	43	2	1754	2	NCAM2	21	22838976	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	11799795	22838976	25290919	1067	7291											
ADAMTS5	11096	broad.mit.edu	37	chr21	28306969	28306969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacacggagtactcaggcCcgaatgtcaggttgcactgc	12	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28306969	A	A	28306969	3	1	7	1	0	0	0	0	1	0	0	0	269	623	22	2	1307	2	ADAMTS5	21	28306969	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	5467993	28306969	19822926	1068	7292											
RNF160	26046	broad.mit.edu	37	chr21	30313517	30313517	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatattaggacagaactatCgaaagttgtcacatatttat	7	6	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30313517	A	A	30313517	1	1	7	0	1	0	0	0	0	0	0	0	13566	899	31	3		3	RNF160	21	30313517	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2006548	30313517	17816378	1069	7293											
RNF160	26046	broad.mit.edu	37	chr21	30343757	30343757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagactaactcaaaataagCtgagcgaatctaaaagaatg	8	6	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30343757	A	A	30343757	3	1	7	1	0	0	0	0	1	0	0	0	13566	797	28	3	4576	3	RNF160	21	30343757	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	30240	30343757	17786138	1070	7294											
GRIK1	2897	broad.mit.edu	37	chr21	31023388	31023388	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatacgtgagatcttaacccCgaaggcattcaaatattctt	7	9	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31023388	T	T	31023388	1	4	7	0	1	0	0	0	0	0	0	0	6839	667	23	4		4	GRIK1	21	31023388	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	679631	31023388	17106507	1071	7295											
TIAM1	7074	broad.mit.edu	37	chr21	32537342	32537342	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcggtctcctctggagcGgtctcagcactgctgccctg	11	17	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32537342	A	A	32537342	2	1	7	1	0	0	0	0	0	0	0	1	16013	1103	39	4		4	TIAM1	21	32537342	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	1513954	32537342	15592553	1072	7296											
SETD4	54093	broad.mit.edu	37	chr21	37425823	37425823	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattcacttcgtttgaaccGcaaaaacaaagcagcaaaat	5	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37425823	A	A	37425823	1	1	7	0	1	0	0	0	0	0	0	0	14246	1102	38	4		4	SETD4	21	37425823	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	4888481	37425823	10704072	1073	7297											
SIM2	6493	broad.mit.edu	37	chr21	38114105	38114105	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcagagctacgccaccgTggtgcacaacagccgctcgt	13	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38114105	C	C	38114105	3	2	7	1	0	0	0	0	1	0	0	0	14437	1696	59	5	968	5	SIM2	21	38114105	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	688282	38114105	10015790	1074	7298											
TTC3	7267	broad.mit.edu	37	chr21	38459658	38459658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctgctgaatttatgaGcaatgattatgttcgtgtga	10	5	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38459658	T	T	38459658	3	4	7	1	0	0	0	0	1	0	0	0	16823	971	34	3	103	3	TTC3	21	38459658	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	345553	38459658	9670237	1075	7299											
ABCG1	9619	broad.mit.edu	37	chr21	43707973	43707973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccttcctggagcccgggCtgacccccgtctgtgtctcc	11	17	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43707973	A	A	43707973	1	1	7	0	1	0	0	0	0	0	0	0	68	812	28	3		3	ABCG1	21	43707973	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	5248315	43707973	4421922	1076	7300											
UBASH3A	53347	broad.mit.edu	37	chr21	43833217	43833217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccttccccacggccgtgCctctggctctccactcctcc	7	22	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43833217	A	A	43833217	3	1	7	1	0	0	0	0	1	0	0	0	16965	739	26	3	453	3	UBASH3A	21	43833217	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	125244	43833217	4296678	1077	7301											
RRP1B	23076	broad.mit.edu	37	chr21	45106693	45106693	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggcatctaggaagcagtAtatctcaactcagttttgcg	9	9	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45106693	G	G	45106693	3	3	7	1	0	0	0	0	1	0	0	0	13799	449	16	5	1064	5	RRP1B	21	45106693	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	1273476	45106693	3023202	1078	7302											
TRPM2	7226	broad.mit.edu	37	chr21	45815319	45815320	+	Nonsense_Mutation	DNP	CC	AA	AA													gcagggagtgagcctccggtCcctctacaagcgttcctcag					rs144976050	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	45815320	AA	AA	45815319	4	1	7	1	0	0	0	0	0	1	0	0	16711	855	30	3	1863	3	TRPM2	21	45815319	Nonsense_Mutation	DNP	CC	TCGA-05-4390-01A-02D-1753-08	708626	45815319	2314576	1079	7303											
TRPM2	7226	broad.mit.edu	37	chr21	45819256	45819256	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgtccgaggcctgggggAagaccacctgcctgcagctc	15	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45819256	T	T	45819256	4	4	7	1	0	0	0	0	0	1	0	0	16711	247	9	5	2194	5	TRPM2	21	45819256	Nonsense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	3937	45819256	2310639	1080	7304											
ITGB2	3689	broad.mit.edu	37	chr21	46330570	46330570	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttctgtctatgggaaagtGagggcaggccctgttctccc	12	11	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46330570	A	A	46330570	1	1	7	0	1	0	0	0	0	0	0	0	7964	1305	45	4		4	ITGB2	21	46330570	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	511314	46330570	1799325	1081	7305											
PRMT2	3275	broad.mit.edu	37	chr21	48080566	48080566	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtctgggtcttctcagagcGggaggcacccagggcctgtg	16	11	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48080566	A	A	48080566	1	1	7	0	1	0	0	0	0	0	0	0	12643	1131	39	4		4	PRMT2	21	48080566	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1749996	48080566	49329	1082	7306											
POTEH	23784	broad.mit.edu	37	chr22	16287715	16287715	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacttgcccatcttgctcctGagtgtcttcatagcagaatc	7	13	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287715	T	T	16287715	2	4	7	1	0	0	0	0	0	0	0	1	12363	1277	45	3		3	POTEH	22	16287715	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08		16287715	35016851	1083	7307											
MICAL3	57553	broad.mit.edu	37	chr22	18301459	18301459	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatccagaactcctccaccAggtcgctccgtctgagggcc	9	17	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18301459	C	C	18301459	3	2	7	1	0	0	0	0	1	0	0	0	9664	188	7	5	2068	5	MICAL3	22	18301459	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	2013744	18301459	33003107	1084	7308											
HIRA	7290	broad.mit.edu	37	chr22	19318997	19318997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtcgagctgttcctgaCactcggtgaagaggcgctgg	16	9	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19318997	A	A	19318997	3	1	7	1	0	0	0	0	1	0	0	0	7187	478	17	3	37	3	HIRA	22	19318997	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1017538	19318997	31985569	1085	7309											
MED15	51586	broad.mit.edu	37	chr22	20937232	20937232	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaacttcagtgtcccctcAcctggacctttaaacacacc	5	16	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20937232	T	T	20937232	2	4	7	1	0	0	0	0	0	0	0	1	9526	146	6	5		5	MED15	22	20937232	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	1618235	20937232	30367334	1086	7310											
PRAME	23532	broad.mit.edu	37	chr22	22891032	22891032	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgaaagccggcagttagtTattgagagggtttccaaggg	14	7	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22891032	A	A	22891032	2	1	7	1	0	0	0	0	0	0	0	1	12525	1744	61	5		5	PRAME	22	22891032	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	1953800	22891032	28413534	1087	7311											
CRYBB2	1415	broad.mit.edu	37	chr22	25627657	25627657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagcagcgactttggggCccctcacccccaggtgcagt	13	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25627657	A	A	25627657	3	1	7	1	0	0	0	0	1	0	0	0	3943	739	26	3	554	3	CRYBB2	22	25627657	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2736625	25627657	25676909	1088	7312											
OSM	5008	broad.mit.edu	37	chr22	30660280	30660281	+	Frame_Shift_Ins	INS	-	T	T													ccaaatcctgggccttggggINSaggcgctgctctaagtcggc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30660281	T	T	30660280	7	5	7	1	0	1	1	0	0	0	0	0	11385	1161	41	0	411	0	OSM	22	30660280	Frame_Shift_Ins	INS	-	TCGA-05-4390-01A-02D-1753-08	5032623	30660280	20644286	1089	7313											
SF3A1	10291	broad.mit.edu	37	chr22	30738254	30738254	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgccagtcgatctgagcaTaggccacccgctccttctcc	8	17	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30738254	C	C	30738254	3	2	7	1	0	0	0	0	1	0	0	0	14259	1406	49	5	1613	5	SF3A1	22	30738254	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	77974	30738254	20566312	1090	7314											
DEPDC5	9681	broad.mit.edu	37	chr22	32188128	32188128	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacagttatgtttttgttaAgcttcccccaaccccacccc	4	16	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32188128	T	T	32188128	1	4	7	0	1	0	0	0	0	0	0	0	4482	87	3	5		5	DEPDC5	22	32188128	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	1449874	32188128	19116438	1091	7315											
DEPDC5	9681	broad.mit.edu	37	chr22	32233048	32233048	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactactccggcgtgcctccCccttaccaccgactacttcc	5	21	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32233048	T	T	32233048	3	4	7	1	0	0	0	0	1	0	0	0	4482	623	22	4	2350	4	DEPDC5	22	32233048	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	44920	32233048	19071518	1092	7316											
MYH9	4627	broad.mit.edu	37	chr22	36708078	36708078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctggccagcacctcccCgtgagcgctcctcaccttgc	9	18	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36708078	A	A	36708078	1	1	7	0	1	0	0	0	0	0	0	0	10136	667	23	1		1	MYH9	22	36708078	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	4475030	36708078	14596488	1093	7317											
IFT27	11020	broad.mit.edu	37	chr22	37159884	37159884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccttctccacccacagCtacctctgcaatgcccttgt	6	19	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37159884	A	A	37159884	1	1	7	0	1	0	0	0	0	0	0	0	7629	812	28	3		3	IFT27	22	37159884	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	451806	37159884	14144682	1094	7318											
TMPRSS6	164656	broad.mit.edu	37	chr22	37462912	37462912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagccggcacacagcatgCgtggcgtcacctggtagcga	15	12	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37462912	A	A	37462912	3	1	7	1	0	0	0	0	1	0	0	0	16374	768	27	3	212	3	TMPRSS6	22	37462912	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	303028	37462912	13841654	1095	7319											
DDX17	10521	broad.mit.edu	37	chr22	38884180	38884180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagggaaagagaaggtaaaGgacatgccaacaacaggtgg	15	6	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38884180	A	A	38884180	1	1	7	0	1	0	0	0	0	0	0	0	4377	1015	35	4		4	DDX17	22	38884180	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1421268	38884180	12420386	1096	7320											
SULT4A1	25830	broad.mit.edu	37	chr22	44237642	44237642	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtaacggtagaaataccCtaaagaggtgctgggacagg	15	6	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44237642	T	T	44237642	1	4	7	0	1	0	0	0	0	0	0	0	15501	696	24	4		4	SULT4A1	22	44237642	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	5353462	44237642	7066924	1097	7321											
SHOX	6473	broad.mit.edu	37	chrX	601506	601506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggatgctccctggggaggCtgggctgggttcacagggct	18	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	601506	A	A	601506	1	1	7	0	1	0	0	0	0	0	0	0	14401	812	28	3		3	SHOX	23	601506	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08		601506	154669054	1098	7322											
IL3RA	3563	broad.mit.edu	37	chrX	1460546	1460546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaccaggctctggaagGggcaagcatccttcattacc	11	12	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1460546	T	T	1460546	1	4	7	0	1	0	0	0	0	0	0	0	7765	1247	43	2		2	IL3RA	23	1460546	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	859040	1460546	153810014	1099	7323											
ARSF	416	broad.mit.edu	37	chrX	3007790	3007790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcctatgggacagagtgGtctgagacattaatgaggta	13	5	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3007790	T	T	3007790	1	4	7	0	1	0	0	0	0	0	0	0	995	1276	44	3		3	ARSF	23	3007790	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1547244	3007790	152262770	1100	7324											
MXRA5	25878	broad.mit.edu	37	chrX	3228241	3228241	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggagcgtccaggagaaaCgtccctgcccagccccggga	15	14	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3228241	G	G	3228241	3	3	7	1	0	0	0	0	1	0	0	0	10097	536	19	4	487	4	MXRA5	23	3228241	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	220451	3228241	152042319	1101	7325											
MXRA5	25878	broad.mit.edu	37	chrX	3261777	3261777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacctcgctggggacgtagCaggcacaaggatgcgggcag	18	10	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3261777	A	A	3261777	3	1	7	1	0	0	0	0	1	0	0	0	10097	710	25	3	8412	3	MXRA5	23	3261777	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	33536	3261777	152008783	1102	7326											
NLGN4X	57502	broad.mit.edu	37	chrX	5811257	5811257	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatgttgaggaagaggagCgacgccccgacggcaatggt	16	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5811257	T	T	5811257	2	4	7	1	0	0	0	0	0	0	0	1	10559	755	27	4		4	NLGN4X	23	5811257	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2549480	5811257	149459303	1103	7327											
KAL1	3730	broad.mit.edu	37	chrX	8503631	8503631	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacaagaggtgggacctaCggaaggcaggatctgggact	16	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8503631	A	A	8503631	5	1	7	1	0	0	0	0	0	0	1	0	8044	550	19	3	211	3	KAL1	23	8503631	Splice_Site	SNP	C	TCGA-05-4390-01A-02D-1753-08	2692374	8503631	146766929	1104	7328											
FAM9B	171483	broad.mit.edu	37	chrX	9001045	9001045	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaattgagcctccaactGggccttggcagccctcctgc	9	15	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9001045	T	T	9001045	1	4	7	0	1	0	0	0	0	0	0	0	5717	1363	47	2		2	FAM9B	23	9001045	5'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	497414	9001045	146269515	1105	7329											
TBL1X	6907	broad.mit.edu	37	chrX	9660312	9660312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtaagcatcttccacccCctgggcactttgaaattggt	8	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9660312	A	A	9660312	1	1	7	0	1	0	0	0	0	0	0	0	15761	638	22	2		2	TBL1X	23	9660312	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	659267	9660312	145610248	1106	7330											
MID1	4281	broad.mit.edu	37	chrX	10437651	10437651	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgttctttccttccttgTcttcctttgaagtttaaatt	6	8	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10437651	A	A	10437651	1	1	7	0	1	0	0	0	0	0	0	0	9669	1682	58	5		5	MID1	23	10437651	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	777339	10437651	144832909	1107	7331											
FRMPD4	9758	broad.mit.edu	37	chrX	12734134	12734134	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagcctcccacccccgcccCacccaaaaccagacagtaca	5	22	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12734134	G	G	12734134	1	3	7	0	1	0	0	0	0	0	0	0	6119	609	21	4		4	FRMPD4	23	12734134	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	2296483	12734134	142536426	1108	7332											
TLR7	51284	broad.mit.edu	37	chrX	12905272	12905272	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagctgagatatttggacTtctccaacaaccggcttgat	9	10	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12905272	A	A	12905272	3	1	7	1	0	0	0	0	1	0	0	0	16079	1609	56	5	1651	5	TLR7	23	12905272	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	171138	12905272	142365288	1109	7333											
GLRA2	2742	broad.mit.edu	37	chrX	14627195	14627195	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtacatcccaagcctGcttatagtaattttgtcctg	7	10	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14627195	T	T	14627195	2	4	7	1	0	0	0	0	0	0	0	1	6519	1306	46	3		3	GLRA2	23	14627195	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	1721923	14627195	140643365	1110	7334											
GRPR	2925	broad.mit.edu	37	chrX	16142118	16142118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgaacttggaggtggaCcatttcatgcactgcaacat	9	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16142118	A	A	16142118	3	1	7	1	0	0	0	0	1	0	0	0	6874	506	18	3	44	3	GRPR	23	16142118	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1514923	16142118	139128442	1111	7335											
REPS2	9185	broad.mit.edu	37	chrX	17151833	17151833	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttaagcattcttggctgCaacttggcctaaatcagttt	8	9	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17151833	T	T	17151833	1	4	7	0	1	0	0	0	0	0	0	0	13337	725	25	4		4	REPS2	23	17151833	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	1009715	17151833	138118727	1112	7336											
FAM48B1	100130302	broad.mit.edu	37	chrX	24380716	24380716	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaacagattgggtagcGcttccctgggggcgggtttc	14	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24380716	A	A	24380716	1	1	7	0	1	0	0	0	0	0	0	0	5624	1102	38	4		4	FAM48B1	23	24380716	5'Flank	SNP	G	TCGA-05-4390-01A-02D-1753-08	7228883	24380716	130889844	1113	7337											
PCYT1B	9468	broad.mit.edu	37	chrX	24593481	24593481	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaacagatttatccaagagGacatgagagagatcaatcat	8	6	2	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24593481	C	C	24593481	1	2	7	0	1	0	0	0	0	0	0	0	11705	1189	41	4		4	PCYT1B	23	24593481	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	212765	24593481	130677079	1114	7338											
POLA1	5422	broad.mit.edu	37	chrX	24806706	24806706	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgaatgcttctgacgcGctcctctaatttcgccatat	7	12	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24806706	C	C	24806706	1	2	7	0	1	0	0	0	0	0	0	0	12282	1102	38	4		4	POLA1	23	24806706	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	213225	24806706	130463854	1115	7339											
DCAF8L2	347442	broad.mit.edu	37	chrX	27766660	27766660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctaaagctgccactgagCttactgggttaaagaaggtg	12	8	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27766660	A	A	27766660	3	1	7	1	0	0	0	0	1	0	0	0	4311	797	28	3	1650	3	DCAF8L2	23	27766660	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2959954	27766660	127503900	1116	7340											
MAGEB10	139422	broad.mit.edu	37	chrX	27839829	27839829	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagagcccattacaaaggcaGatatgctgagaaatgtaacc	9	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27839829	T	T	27839829	3	4	7	1	0	0	0	0	1	0	0	0	9265	942	33	3	408	3	MAGEB10	23	27839829	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	73169	27839829	127430731	1117	7341											
MAGEB2	4113	broad.mit.edu	37	chrX	30237448	30237448	+	Frame_Shift_Del	DEL	G	-	-													cctggaagctcatcaccaaaGatctggtgcaggaaaaatat							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30237448	-	-	30237448	7	5	7	1	0	1	0	1	0	0	0	0	9268	942	33	0	753	0	MAGEB2	23	30237448	Frame_Shift_Del	DEL	G	TCGA-05-4390-01A-02D-1753-08	2397619	30237448	125033112	1118	7342											
MAGEB3	4114	broad.mit.edu	37	chrX	30254366	30254366	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccactgtgcagtctcgcacaGaccctctaatcatgaagaca	7	14	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30254366	T	T	30254366	3	4	7	1	0	0	0	0	1	0	0	0	9269	942	33	3	327	3	MAGEB3	23	30254366	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	16918	30254366	125016194	1119	7343											
TAB3	257397	broad.mit.edu	37	chrX	30864563	30864563	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggattgtaatcttacGgataaaaactgtctcttaaa	6	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30864563	A	A	30864563	1	1	7	0	1	0	0	0	0	0	0	0	15616	1131	39	4		4	TAB3	23	30864563	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	610197	30864563	124405997	1120	7344											
DMD	1756	broad.mit.edu	37	chrX	31462617	31462617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagaagcttccatctgGtgttcaggtcttccagagtg	11	11	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31462617	T	T	31462617	3	4	7	1	0	0	0	0	1	0	0	0	4620	1261	44	3	2186	3	DMD	23	31462617	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	598054	31462617	123807943	1121	7345											
DMD	1756	broad.mit.edu	37	chrX	32502979	32502980	+	Intron	DNP	CC	AA	AA													gttagtaccttctggatttcCccacaaataaccattttgga							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32502980	AA	AA	32502979	1	1	7	0	1	0	0	0	0	0	0	0	4620	638	22	2		2	DMD	23	32502979	Intron	DNP	CC	TCGA-05-4390-01A-02D-1753-08	1040362	32502979	122767581	1122	7346											
OTC	5009	broad.mit.edu	37	chrX	38271170	38271170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgcttgcccagaaagcCagaagaagtggatgatgaag	12	8	0	5			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38271170	A	A	38271170	3	1	7	1	0	0	0	0	1	0	0	0	11395	594	21	2	957	2	OTC	23	38271170	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	5768191	38271170	116999390	1123	7347											
USP9X	8239	broad.mit.edu	37	chrX	41048422	41048422	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactattccaaaggggcctcAagagttaacatgcagccatg	10	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41048422	T	T	41048422	1	4	7	0	1	0	0	0	0	0	0	0	17217	145	5	5		5	USP9X	23	41048422	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	2777252	41048422	114222138	1124	7348											
RP2	6102	broad.mit.edu	37	chrX	46713296	46713296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccagttcaaagatgcagGgctaagtatcttcaacaata	7	8	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46713296	T	T	46713296	3	4	7	1	0	0	0	0	1	0	0	0	13645	1232	43	2	494	2	RP2	23	46713296	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	5664874	46713296	108557264	1125	7349											
ZNF157	7712	broad.mit.edu	37	chrX	47272883	47272883	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacaggagagagaccctttGagtgtcaagaatgtgggaaa	13	6	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47272883	T	T	47272883	4	4	7	1	0	0	0	0	0	1	0	0	17863	1291	45	3	1425	3	ZNF157	23	47272883	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	559587	47272883	107997677	1126	7350											
SSX1	6756	broad.mit.edu	37	chrX	48126274	48126274	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcacttactttccttccCtcttctcgcctcagcctggg	6	17	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48126274	T	T	48126274	1	4	7	0	1	0	0	0	0	0	0	0	15321	696	24	4		4	SSX1	23	48126274	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	853391	48126274	107144286	1127	7351											
EBP	10682	broad.mit.edu	37	chrX	48386709	48386709	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccaccctctctacttctGgttttactttgtcttcatga	7	12	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48386709	A	A	48386709	4	1	7	1	0	0	0	0	0	1	0	0	4926	1357	47	4	571	4	EBP	23	48386709	Nonsense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	260435	48386709	106883851	1128	7352											
WAS	7454	broad.mit.edu	37	chrX	48547115	48547115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccggccccctattgtggGgggtaacaagggtcgttctg	14	13	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48547115	T	T	48547115	3	4	7	1	0	0	0	0	1	0	0	0	17378	1232	43	2	1036	2	WAS	23	48547115	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	160406	48547115	106723445	1129	7353											
ERAS	3266	broad.mit.edu	37	chrX	48687822	48687822	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaatgtgctggacacaGcagggcaggccatccatagg	13	10	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48687822	A	A	48687822	3	1	7	1	0	0	0	0	1	0	0	0	5247	971	34	4	291	4	ERAS	23	48687822	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	140707	48687822	106582738	1130	7354											
GRIPAP1	56850	broad.mit.edu	37	chrX	48847300	48847300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtagaacatctgccctGccttctggcattccagctcc	9	14	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48847300	T	T	48847300	1	4	7	0	1	0	0	0	0	0	0	0	6855	1334	46	3		3	GRIPAP1	23	48847300	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	159478	48847300	106423260	1131	7355											
PPP1R3F	89801	broad.mit.edu	37	chrX	49142649	49142649	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctcacctgagccgcctAcgggctgctgtggctgcggg	15	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49142649	T	T	49142649	2	4	7	1	0	0	0	0	0	0	0	1	12476	378	14	5		5	PPP1R3F	23	49142649	Silent	SNP	A	TCGA-05-4390-01A-02D-1753-08	295349	49142649	106127911	1132	7356											
CCNB3	85417	broad.mit.edu	37	chrX	50053545	50053545	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtatcccagcattgcGgagggggagaccctcttcaa	15	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50053545	A	A	50053545	2	1	7	1	0	0	0	0	0	0	0	1	2944	1103	39	4		4	CCNB3	23	50053545	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	910896	50053545	105217015	1133	7357											
SHROOM4	57477	broad.mit.edu	37	chrX	50377002	50377002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaaagaggactggccagGcctctggccagggcttattc	13	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50377002	T	T	50377002	3	4	7	1	0	0	0	0	1	0	0	0	14409	1203	42	3	2434	3	SHROOM4	23	50377002	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	323457	50377002	104893558	1134	7358											
MAGED1	9500	broad.mit.edu	37	chrX	51641289	51641289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcaaccgtgccagtgagGgtgagtggctggacctgcag	17	9	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51641289	T	T	51641289	3	4	7	1	0	0	0	0	1	0	0	0	9275	1246	43	2	1936	2	MAGED1	23	51641289	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1264287	51641289	103629271	1135	7359											
MAGED1	9500	broad.mit.edu	37	chrX	51641678	51641678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttttttaccttcaggGtgagacatcccctccttgga	7	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51641678	T	T	51641678	3	4	7	1	0	0	0	0	1	0	0	0	9275	1275	44	3	1989	3	MAGED1	23	51641678	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	389	51641678	103628882	1136	7360											
TSPYL2	64061	broad.mit.edu	37	chrX	53114989	53114989	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacaatgagataactgacaTcaatgagaacatctgcgaca	8	8	2	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53114989	G	G	53114989	3	3	7	1	0	0	0	0	1	0	0	0	16785	1435	50	5	1437	5	TSPYL2	23	53114989	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	1473311	53114989	102155571	1137	7361											
KDM5C	8242	broad.mit.edu	37	chrX	53245063	53245063	+	Frame_Shift_Del	DEL	C	-	-													actcagctcctccttgctctCcaggaaggtcttaggcgatg							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53245063	-	-	53245063	7	5	7	1	0	1	0	1	0	0	0	0	8205	864	30	0	3983	0	KDM5C	23	53245063	Frame_Shift_Del	DEL	C	TCGA-05-4390-01A-02D-1753-08	130074	53245063	102025497	1138	7362											
SMC1A	8243	broad.mit.edu	37	chrX	53423085	53423085	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcccttcctggtcactttCactccccatccctggttaat	5	17	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53423085	A	A	53423085	1	1	7	0	1	0	0	0	0	0	0	0	14895	841	29	3		3	SMC1A	23	53423085	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	178022	53423085	101847475	1139	7363											
SMC1A	8243	broad.mit.edu	37	chrX	53440455	53440455	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaccttacccatttccactCcttcacccagaaaaagttac	2	16	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53440455	A	A	53440455	1	1	7	0	1	0	0	0	0	0	0	0	14895	870	30	3		3	SMC1A	23	53440455	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	17370	53440455	101830105	1140	7364											
WNK3	65267	broad.mit.edu	37	chrX	54337611	54337611	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatacatttctttcctttTaatatagattcccaggaatc	3	9	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54337611	C	C	54337611	2	2	7	1	0	0	0	0	0	0	0	1	17506	1751	61	5		5	WNK3	23	54337611	Silent	SNP	T	TCGA-05-4390-01A-02D-1753-08	897156	54337611	100932949	1141	7365											
TRO	7216	broad.mit.edu	37	chrX	54950180	54950180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcccacaaccaggacCcggggcaaaagaaaccgaaa	11	13	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54950180	A	A	54950180	2	1	7	1	0	0	0	0	0	0	0	1	16699	610	22	2		2	TRO	23	54950180	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	612569	54950180	100320380	1142	7366											
ALAS2	212	broad.mit.edu	37	chrX	55035570	55035570	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggagtaggcctggacccAagtgaagcgcaggtggggtg	18	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55035570	C	C	55035570	1	2	7	0	1	0	0	0	0	0	0	0	485	145	5	5		5	ALAS2	23	55035570	3'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	85390	55035570	100234990	1143	7367											
ZXDB	158586	broad.mit.edu	37	chrX	57618742	57618742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagcggcggcggcggcggCggcggcgacgacttcttcct	17	15	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57618742	A	A	57618742	2	1	7	1	0	0	0	0	0	0	0	1	18380	755	27	3		3	ZXDB	23	57618742	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2583172	57618742	97651818	1144	7368											
MTMR8	55613	broad.mit.edu	37	chrX	63490885	63490885	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttcttaatttccaggAggctctctagcatactctgc	7	11	4	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63490885	T	T	63490885	3	4	7	1	0	0	0	0	1	0	0	0	10043	304	11	5	572	5	MTMR8	23	63490885	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	5872143	63490885	91779675	1145	7369											
PJA1	64219	broad.mit.edu	37	chrX	68381543	68381543	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatctgcaaatccatcaaaGaggctccaatccacttctag	5	14	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68381543	A	A	68381543	2	1	7	1	0	0	0	0	0	0	0	1	12056	929	33	4		4	PJA1	23	68381543	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	4890658	68381543	86889017	1146	7370											
PJA1	64219	broad.mit.edu	37	chrX	68381584	68381584	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcttcgctcacactggagtCatcttcaaggttgttgtttc	9	10	5	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68381584	T	T	68381584	3	4	7	1	0	0	0	0	1	0	0	0	12056	826	29	4	437	4	PJA1	23	68381584	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	41	68381584	86888976	1147	7371											
MED12	9968	broad.mit.edu	37	chrX	70345279	70345279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgagatgatgcccgcCatgccatcaagaaaatcacc	9	13	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70345279	A	A	70345279	3	1	7	1	0	0	0	0	1	0	0	0	9521	594	21	2	2367	2	MED12	23	70345279	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	1963695	70345279	84925281	1148	7372											
NLGN3	54413	broad.mit.edu	37	chrX	70389915	70389915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggttcaacagtaccgggCtgccccactcacactccact	8	17	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70389915	A	A	70389915	3	1	7	1	0	0	0	0	1	0	0	0	10558	796	28	3	2541	3	NLGN3	23	70389915	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	44636	70389915	84880645	1149	7373											
ZMYM3	9203	broad.mit.edu	37	chrX	70471214	70471214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtggggacccttggccCagcccttaggaggagggaag	18	9	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70471214	A	A	70471214	1	1	7	0	1	0	0	0	0	0	0	0	17827	609	21	2		2	ZMYM3	23	70471214	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	81299	70471214	84799346	1150	7374											
PHKA1	5255	broad.mit.edu	37	chrX	71915536	71915536	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatgctcaggggctcccaGcacttctctccttgtactga	8	15	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71915536	A	A	71915536	1	1	7	0	1	0	0	0	0	0	0	0	11938	986	34	4		4	PHKA1	23	71915536	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1444322	71915536	83355024	1151	7375											
RLIM	51132	broad.mit.edu	37	chrX	73811157	73811157	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgattccttcagaaagcaatGactcaattcaggttgttact	7	8	3	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73811157	A	A	73811157	1	1	7	0	1	0	0	0	0	0	0	0	13501	1305	45	4		4	RLIM	23	73811157	3'UTR	SNP	G	TCGA-05-4390-01A-02D-1753-08	1895621	73811157	81459403	1152	7376											
ATRX	546	broad.mit.edu	37	chrX	76845435	76845435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacagattagtgtttatGgattagaagattcctagtaa	8	3	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76845435	T	T	76845435	1	4	7	0	1	0	0	0	0	0	0	0	1212	1363	47	2		2	ATRX	23	76845435	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	3034278	76845435	78425125	1153	7377											
MAGT1	84061	broad.mit.edu	37	chrX	77086275	77086275	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccaggtattggtaatcacTgtataaacaaaaaataagaa	6	5	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77086275	A	A	77086275	1	1	7	0	1	0	0	0	0	0	0	0	9288	1595	55	5		5	MAGT1	23	77086275	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	240840	77086275	78184285	1154	7378											
ATP7A	538	broad.mit.edu	37	chrX	77218100	77218100	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacagccctacttcctctCtcttctccctcattttcaga	2	17	6	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77218100	A	A	77218100	1	1	7	0	1	0	0	0	0	0	0	0	1194	928	32	3		3	ATP7A	23	77218100	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	131825	77218100	78052460	1155	7379											
ATP7A	538	broad.mit.edu	37	chrX	77284981	77284981	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaacctgtaccaccaaacTatcaatagcacccctcacat	2	15	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77284981	A	A	77284981	1	1	7	0	1	0	0	0	0	0	0	0	1194	1537	53	5		5	ATP7A	23	77284981	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	66881	77284981	77985579	1156	7380											
PGK1	5230	broad.mit.edu	37	chrX	77380234	77380234	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtataaagggcatgaacaGgtttataaagactgaagggt	13	3	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77380234	C	C	77380234	1	2	7	0	1	0	0	0	0	0	0	0	11885	1015	35	4		4	PGK1	23	77380234	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	95253	77380234	77890326	1157	7381											
TAF9B	51616	broad.mit.edu	37	chrX	77387317	77387317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccaagctatgaattacCcagaatctgaaacatatgat	5	8	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77387317	A	A	77387317	1	1	7	0	1	0	0	0	0	0	0	0	15655	638	22	2		2	TAF9B	23	77387317	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	7083	77387317	77883243	1158	7382											
TAF9B	51616	broad.mit.edu	37	chrX	77395237	77395237	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttacgtgccagccgccgGgggcgggagtttcagcaagc	18	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77395237	T	T	77395237	1	4	7	0	1	0	0	0	0	0	0	0	15655	1247	43	2		2	TAF9B	23	77395237	5'Flank	SNP	G	TCGA-05-4390-01A-02D-1753-08	7920	77395237	77875323	1159	7383											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912725	77912725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttttccctaatggattgGgatcaggcttctcttccagg	9	10	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77912725	T	T	77912725	3	4	7	1	0	0	0	0	1	0	0	0	17717	1232	43	2	238	2	ZCCHC5	23	77912725	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	517488	77912725	77357835	1160	7384											
ITM2A	9452	broad.mit.edu	37	chrX	78616925	78616925	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatcacgaatttcctccaCagcaactaggtcttctcgaa	5	13	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78616925	T	T	78616925	3	4	7	1	0	0	0	0	1	0	0	0	7982	478	17	4	195	4	ITM2A	23	78616925	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	704200	78616925	76653635	1161	7385											
FAM46D	169966	broad.mit.edu	37	chrX	79698012	79698012	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcccaatattttgtttGctgtctagtgatctactgac	6	9	3	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79698012	C	C	79698012	1	2	7	0	1	0	0	0	0	0	0	0	5619	1334	46	4		4	FAM46D	23	79698012	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1081087	79698012	75572548	1162	7386											
HDX	139324	broad.mit.edu	37	chrX	83599332	83599332	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctcctacttcaggcccaGcttcctctcctggtgtgagt	8	16	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83599332	C	C	83599332	3	2	7	1	0	0	0	0	1	0	0	0	7093	971	34	4	506	4	HDX	23	83599332	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3901320	83599332	71671228	1163	7387											
PCDH11X	27328	broad.mit.edu	37	chrX	91369310	91369310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagagggcttctcaaaacCataggcatagatgtcacgga	12	9	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91369310	A	A	91369310	1	1	7	0	1	0	0	0	0	0	0	0	11602	609	21	2		2	PCDH11X	23	91369310	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	7769978	91369310	63901250	1164	7388											
NAP1L3	4675	broad.mit.edu	37	chrX	92927894	92927894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaggcttgttgagttcaGcatattttctttcaagatca	8	7	4	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92927894	T	T	92927894	3	4	7	1	0	0	0	0	1	0	0	0	10252	971	34	3	1114	3	NAP1L3	23	92927894	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	1558584	92927894	62342666	1165	7389											
PCDH19	57526	broad.mit.edu	37	chrX	99657617	99657617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggttagcactggtgttgcGggtattctggttctccacat	13	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99657617	T	T	99657617	3	4	7	1	0	0	0	0	1	0	0	0	11608	1116	39	1	941	1	PCDH19	23	99657617	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	6729723	99657617	55612943	1166	7390											
CSTF2	1478	broad.mit.edu	37	chrX	100075538	100075538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatctcatgaatcgctaccGgagccgctgacggttcggac	11	13	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100075538	T	T	100075538	1	4	7	0	1	0	0	0	0	0	0	0	4018	1131	39	1		1	CSTF2	23	100075538	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	417921	100075538	55195022	1167	7391											
NOX1	27035	broad.mit.edu	37	chrX	100110949	100110950	+	Intron	INS	-	T	T													aaagccccttttcttgccacINStgcctcagtcatgatttcaa							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100110950	T	T	100110949	6	5	7	0	1	1	1	0	0	0	0	0	10651	580	20	0		0	NOX1	23	100110949	Intron	INS	-	TCGA-05-4390-01A-02D-1753-08	35411	100110949	55159611	1168	7392											
CENPI	2491	broad.mit.edu	37	chrX	100365074	100365074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgcttcagtgtgctacaCaatatgtttttccttatttt	5	7	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100365074	A	A	100365074	1	1	7	0	1	0	0	0	0	0	0	0	3263	493	17	3		3	CENPI	23	100365074	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	254125	100365074	54905486	1169	7393											
BTK	695	broad.mit.edu	37	chrX	100626677	100626677	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctccatttcactggactCttcacctcttctctgtaatg	5	13	5	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100626677	A	A	100626677	4	1	7	1	0	0	0	0	0	1	0	0	1567	922	32	3	1790	3	BTK	23	100626677	Nonsense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	261603	100626677	54643883	1170	7394											
ARMCX2	9823	broad.mit.edu	37	chrX	100911043	100911043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcaaacggaaaaagtttGcaatggaattgacaagcagg	11	5	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100911043	T	T	100911043	3	4	7	1	0	0	0	0	1	0	0	0	964	1319	46	3	370	3	ARMCX2	23	100911043	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	284366	100911043	54359517	1171	7395											
MORF4L2	9643	broad.mit.edu	37	chrX	102931676	102931676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccgagggggctgaggtgCttcgctggtactgccaccat	14	12	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102931676	A	A	102931676	3	1	7	1	0	0	0	0	1	0	0	0	9801	797	28	3	590	3	MORF4L2	23	102931676	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	2020633	102931676	52338884	1172	7396											
ESX1	80712	broad.mit.edu	37	chrX	103495020	103495020	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcagaggcgccatgggCggcccgggtggcagaggcgc	22	11	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103495020	G	G	103495020	2	3	7	1	0	0	0	0	0	0	0	1	5305	755	27	4		4	ESX1	23	103495020	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	563344	103495020	51775540	1173	7397											
CLDN2	9075	broad.mit.edu	37	chrX	106171518	106171518	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttctggggcttttgggCacactggttgccatgctgct	14	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106171518	A	A	106171518	2	1	7	1	0	0	0	0	0	0	0	1	3512	697	25	3		3	CLDN2	23	106171518	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	2676498	106171518	49099042	1174	7398											
ATG4A	115201	broad.mit.edu	37	chrX	107380532	107380532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcttaggggagcacaggGctctgattctctttcttttc	12	9	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107380532	T	T	107380532	1	4	7	0	1	0	0	0	0	0	0	0	1100	1218	42	3		3	ATG4A	23	107380532	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1209014	107380532	47890028	1175	7399											
COL4A6	1288	broad.mit.edu	37	chrX	107402768	107402768	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgatgtcctggctgtgcAcagcaatggcttgcgagggt	16	8	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107402768	T	T	107402768	3	4	7	1	0	0	0	0	1	0	0	0	3727	159	6	5	344	5	COL4A6	23	107402768	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	22236	107402768	47867792	1176	7400											
COL4A5	1287	broad.mit.edu	37	chrX	107807133	107807133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgatggaattccagggCcaccaggaccaaaaggaatc	12	9	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107807133	A	A	107807133	3	1	7	1	0	0	0	0	1	0	0	0	3726	739	26	3	267	3	COL4A5	23	107807133	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	404365	107807133	47463427	1177	7401											
COL4A5	1287	broad.mit.edu	37	chrX	107935990	107935990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctagggacggctggcaGctgccttcgtcgctttagta	12	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107935990	T	T	107935990	3	4	7	1	0	0	0	0	1	0	0	0	3726	971	34	3	4724	3	COL4A5	23	107935990	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	128857	107935990	47334570	1178	7402											
IRS4	8471	broad.mit.edu	37	chrX	107979482	107979482	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgaggaaagaagcggggtGgtcaccactgctgctagagc	15	11	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107979482	T	T	107979482	2	4	7	1	0	0	0	0	0	0	0	1	7912	1335	47	2		2	IRS4	23	107979482	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	43492	107979482	47291078	1179	7403											
PAK3	5063	broad.mit.edu	37	chrX	110459869	110459869	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgacagagagctctgtcaaGagatgtctagagttaggcta	13	6	3	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110459869	A	A	110459869	1	1	7	0	1	0	0	0	0	0	0	0	11496	957	33	4		4	PAK3	23	110459869	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	2480387	110459869	44810691	1180	7404											
TRPC5	7224	broad.mit.edu	37	chrX	111025234	111025234	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcagaaggtgttgttgaAccagttaccaaggtatagaa	14	5	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111025234	G	G	111025234	3	3	7	1	0	0	0	0	1	0	0	0	16707	43	2	5	908	5	TRPC5	23	111025234	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	565365	111025234	44245326	1181	7405											
PLS3	5358	broad.mit.edu	37	chrX	114856611	114856611	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacttcatgagctcttcaagGaagctaatatgccattacca	6	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114856611	C	C	114856611	3	2	7	1	0	0	0	0	1	0	0	0	12203	1175	41	4	133	4	PLS3	23	114856611	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3831377	114856611	40413949	1182	7406											
WDR44	54521	broad.mit.edu	37	chrX	117480358	117480358	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctccctcagcctcgccCgagacccacttccccagtct	6	21	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117480358	A	A	117480358	1	1	7	0	1	0	0	0	0	0	0	0	17423	667	23	1		1	WDR44	23	117480358	5'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	2623747	117480358	37790202	1183	7407											
UPF3B	65109	broad.mit.edu	37	chrX	118979170	118979170	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatactgtaccatcatcgaTagtcccgactttggtatctc	6	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118979170	A	A	118979170	3	1	7	1	0	0	0	0	1	0	0	0	17132	1406	49	5	1023	5	UPF3B	23	118979170	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	1498812	118979170	36291390	1184	7408											
RNF113A	7737	broad.mit.edu	37	chrX	119004598	119004598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggcaagtcggaagcacCaccctctcctgtagctcgat	9	14	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119004598	A	A	119004598	3	1	7	1	0	0	0	0	1	0	0	0	13538	594	21	2	56	2	RNF113A	23	119004598	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	25428	119004598	36265962	1185	7409											
ATP1B4	23439	broad.mit.edu	37	chrX	119510427	119510427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataactacacctctctttaGttccttcaggttttcctctt	3	13	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119510427	T	T	119510427	1	4	7	0	1	0	0	0	0	0	0	0	1139	1044	36	3		3	ATP1B4	23	119510427	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	505829	119510427	35760133	1186	7410											
CUL4B	8450	broad.mit.edu	37	chrX	119694176	119694176	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaccctacaaactccagGgtgtcttcaaaacgcagctt	6	13	3	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119694176	T	T	119694176	2	4	7	1	0	0	0	0	0	0	0	1	4091	1219	43	2		2	CUL4B	23	119694176	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	183749	119694176	35576384	1187	7411											
THOC2	57187	broad.mit.edu	37	chrX	122840794	122840794	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactcatagagagcttgctGgaaatctgttgaacataaga	9	7	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122840794	T	T	122840794	3	4	7	1	0	0	0	0	1	0	0	0	15988	1357	47	2	4789	2	THOC2	23	122840794	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3146618	122840794	32429766	1188	7412											
STAG2	10735	broad.mit.edu	37	chrX	123183918	123183918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctattttttaatccctaGtaataagataatgtcatatt	3	5	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123183918	T	T	123183918	1	4	7	0	1	0	0	0	0	0	0	0	15361	1044	36	3		3	STAG2	23	123183918	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	343124	123183918	32086642	1189	7413											
SH2D1A	4068	broad.mit.edu	37	chrX	123503938	123503938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagttacacaaatgttaCttctcttagcatccctagca	4	11	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123503938	A	A	123503938	1	1	7	0	1	0	0	0	0	0	0	0	14343	580	20	3		3	SH2D1A	23	123503938	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	320020	123503938	31766622	1190	7414											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686305	125686305	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgcgaacaccttgttgaccGtgcccagctccagttggcgc	11	15	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125686305	C	C	125686305	3	2	7	1	0	0	0	0	1	0	0	0	4297	1145	40	4	1108	4	DCAF12L1	23	125686305	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	2182367	125686305	29584255	1191	7415											
OCRL	4952	broad.mit.edu	37	chrX	128699806	128699806	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatgcctgatgccaatgaGgtgaaaagtcttattaataa	9	6	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128699806	A	A	128699806	2	1	7	1	0	0	0	0	0	0	0	1	10918	991	35	4		4	OCRL	23	128699806	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	3013501	128699806	26570754	1192	7416											
ZDHHC9	51114	broad.mit.edu	37	chrX	128946887	128946887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagtcagaccatctttaCctcctggaacgtatatcaca	5	14	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128946887	A	A	128946887	1	1	7	0	1	0	0	0	0	0	0	0	17748	522	18	3		3	ZDHHC9	23	128946887	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	247081	128946887	26323673	1193	7417											
RAB33A	9363	broad.mit.edu	37	chrX	129318489	129318489	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagatccaggtgccctcCaacttagccctgaaatttgc	8	13	0	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129318489	A	A	129318489	2	1	7	1	0	0	0	0	0	0	0	1	13030	581	21	2		2	RAB33A	23	129318489	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	371602	129318489	25952071	1194	7418											
GPR119	139760	broad.mit.edu	37	chrX	129518863	129518863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggcaatcttgagcatgtCgcagtagaagaagacaaaga	13	6	1	5	rs142057970		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129518863	A	A	129518863	3	1	7	1	0	0	0	0	1	0	0	0	6699	884	31	3	452	3	GPR119	23	129518863	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	200374	129518863	25751697	1195	7419											
RBMX2	51634	broad.mit.edu	37	chrX	129536369	129536369	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtccacatctttcttcctcAgtgctctccagattctcctg	6	15	5	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129536369	T	T	129536369	1	4	7	0	1	0	0	0	0	0	0	0	13260	203	7	5		5	RBMX2	23	129536369	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	17506	129536369	25734191	1196	7420											
ENOX2	10495	broad.mit.edu	37	chrX	129813734	129813734	+	Intron	DEL	G	-	-													gtgggagatctaagttgtaaGggcaaaaacatttgaaatta							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129813734	-	-	129813734	6	5	7	0	1	1	0	1	0	0	0	0	5169	1015	35	0		0	ENOX2	23	129813734	Intron	DEL	G	TCGA-05-4390-01A-02D-1753-08	277365	129813734	25456826	1197	7421											
ARHGAP36	158763	broad.mit.edu	37	chrX	130215907	130215907	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaggtaagctgtaccccGgattgtggcatcctcgcctt	11	12	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130215907	T	T	130215907	1	4	7	0	1	0	0	0	0	0	0	0	885	1131	39	1		1	ARHGAP36	23	130215907	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	402173	130215907	25054653	1198	7422											
TFDP3	51270	broad.mit.edu	37	chrX	132350996	132350996	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaagaaacagaaaaccTcacattaaaaaaaaaaaaaa	2	6	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132350996	A	A	132350996	1	1	7	0	1	0	0	0	0	0	0	0	15922	1566	54	5		5	TFDP3	23	132350996	3'UTR	SNP	T	TCGA-05-4390-01A-02D-1753-08	2135089	132350996	22919564	1199	7423											
CCDC160	347475	broad.mit.edu	37	chrX	133378823	133378823	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatattggaagaggtgcCtggagaaatggatgctagaa	14	4	1	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133378823	A	A	133378823	1	1	7	1	0	0	0	0	0	0	0	0	2819	696	24	2		2	CCDC160	23	133378823	Translation_Start_Site	SNP	C	TCGA-05-4390-01A-02D-1753-08	1027827	133378823	21891737	1200	7424											
ZNF449	203523	broad.mit.edu	37	chrX	134481012	134481012	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaatctgagaagtgaggctCcagataaactgtaaactgct	11	7	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134481012	A	A	134481012	1	1	7	0	1	0	0	0	0	0	0	0	18047	870	30	3		3	ZNF449	23	134481012	5'UTR	SNP	C	TCGA-05-4390-01A-02D-1753-08	1102189	134481012	20789548	1201	7425											
GPR112	139378	broad.mit.edu	37	chrX	135428831	135428831	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacagacaggacagctacgtCcttgtctgatggtatcttac	9	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135428831	A	A	135428831	3	1	7	1	0	0	0	0	1	0	0	0	6694	855	30	3	2976	3	GPR112	23	135428831	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	947819	135428831	19841729	1202	7426											
BRS3	680	broad.mit.edu	37	chrX	135574143	135574143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatcccgaaagagaattgCcagaacggtattggtgttgg	13	6	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135574143	A	A	135574143	3	1	7	1	0	0	0	0	1	0	0	0	1531	739	26	3	819	3	BRS3	23	135574143	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	145312	135574143	19696417	1203	7427											
RBMX	27316	broad.mit.edu	37	chrX	135961336	135961336	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctaggtcaaatgaaataaCcaaagtaaatgtgtaaacag	7	7	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135961336	G	G	135961336	1	3	7	0	1	0	0	0	0	0	0	0	13259	522	18	4		4	RBMX	23	135961336	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	387193	135961336	19309224	1204	7428											
GPR101	83550	broad.mit.edu	37	chrX	136112902	136112902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgccgtcgctggccaccGtgctgctctctctgacctcc	10	18	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136112902	T	T	136112902	3	4	7	1	0	0	0	0	1	0	0	0	6687	1145	40	3	597	3	GPR101	23	136112902	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	151566	136112902	19157658	1205	7429											
ZIC3	7547	broad.mit.edu	37	chrX	136652125	136652125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccactccacccgctataGcttctgcaaacagtaaagat	5	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136652125	T	T	136652125	3	4	7	1	0	0	0	0	1	0	0	0	17806	971	34	3	1310	3	ZIC3	23	136652125	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	539223	136652125	18618435	1206	7430											
FGF13	2258	broad.mit.edu	37	chrX	137785277	137785277	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaagaaaatgaaaacaGtgttacaattctgaatttca	5	4	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137785277	C	C	137785277	1	2	7	0	1	0	0	0	0	0	0	0	5899	1044	36	4		4	FGF13	23	137785277	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	1133152	137785277	17485283	1207	7431											
FGF13	2258	broad.mit.edu	37	chrX	137939714	137939714	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggtgtacttgcttcagCgggcagcagaagatttcgtg	14	7	1	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137939714	A	A	137939714	2	1	7	1	0	0	0	0	0	0	0	1	5899	755	27	3		3	FGF13	23	137939714	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	154437	137939714	17330846	1208	7432											
FGF13	2258	broad.mit.edu	37	chrX	137939775	137939775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcttttttctttaattccGcagattggatggaatcttgt	7	7	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137939775	A	A	137939775	3	1	7	1	0	0	0	0	1	0	0	0	5899	1087	38	4	894	4	FGF13	23	137939775	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	61	137939775	17330785	1209	7433											
ATP11C	286410	broad.mit.edu	37	chrX	138908907	138908907	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaatctttgtgcaatgtAagcttctgtttccgaaactg	7	8	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138908907	T	T	138908907	3	4	7	1	0	0	0	0	1	0	0	0	1125	362	13	5	3465	5	ATP11C	23	138908907	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	969132	138908907	16361653	1210	7434											
SPANXN2	494119	broad.mit.edu	37	chrX	142795404	142795404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgtgaagatccttcagCtgagtctaggccttcgtcct	9	13	2	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142795404	A	A	142795404	3	1	7	1	0	0	0	0	1	0	0	0	15107	797	28	3	272	3	SPANXN2	23	142795404	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	3886497	142795404	12475156	1211	7435											
AFF2	2334	broad.mit.edu	37	chrX	148039860	148039860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgtatttttttccctGttaaagccaatagaagttgc	7	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148039860	T	T	148039860	1	4	7	0	1	0	0	0	0	0	0	0	357	1392	48	3		3	AFF2	23	148039860	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	5244456	148039860	7230700	1212	7436											
AFF2	2334	broad.mit.edu	37	chrX	148072807	148072807	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcatgaccaatcttgTccgctacgttcgccaaggac	9	14	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148072807	A	A	148072807	3	1	7	1	0	0	0	0	1	0	0	0	357	1667	58	5	4018	5	AFF2	23	148072807	Missense_Mutation	SNP	T	TCGA-05-4390-01A-02D-1753-08	32947	148072807	7197753	1213	7437											
IDS	3423	broad.mit.edu	37	chrX	148579886	148579886	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttttaagtgcaagaaatGaagccatgaaggctacacac	9	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148579886	T	T	148579886	1	4	7	0	1	0	0	0	0	0	0	0	7573	1305	45	3		3	IDS	23	148579886	Intron	SNP	G	TCGA-05-4390-01A-02D-1753-08	507079	148579886	6690674	1214	7438											
MTMR1	8776	broad.mit.edu	37	chrX	149905222	149905222	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcggtggctctccaatgtGgatgggacgcattggctgga	17	9	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149905222	C	C	149905222	2	2	7	1	0	0	0	0	0	0	0	1	10032	1335	47	4		4	MTMR1	23	149905222	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	1325336	149905222	5365338	1215	7439											
HMGB3	3149	broad.mit.edu	37	chrX	150156302	150156302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtgcaaagggtcctgCtaaagttgcccggaaaaagg	14	7	0	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150156302	A	A	150156302	3	1	7	1	0	0	0	0	1	0	0	0	7294	797	28	3	532	3	HMGB3	23	150156302	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	251080	150156302	5114258	1216	7440											
PASD1	139135	broad.mit.edu	37	chrX	150817161	150817161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgctgctgctgctgctgCtgctatctcagacgtatgta	11	12	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150817161	A	A	150817161	3	1	7	1	0	0	0	0	1	0	0	0	11565	797	28	3	734	3	PASD1	23	150817161	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	660859	150817161	4453399	1217	7441											
GABRA3	2556	broad.mit.edu	37	chrX	151514097	151514097	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatagccgtccagaagaCgatccaagattctggtgaag	11	9	2	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151514097	T	T	151514097	3	4	7	1	0	0	0	0	1	0	0	0	6222	536	19	4	1292	4	GABRA3	23	151514097	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	696936	151514097	3756463	1218	7442											
GABRQ	55879	broad.mit.edu	37	chrX	151821209	151821209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcctgagcgatctcccctCcacctcagagcaggcccggc	10	18	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151821209	A	A	151821209	3	1	7	1	0	0	0	0	1	0	0	0	6235	855	30	3	1398	3	GABRQ	23	151821209	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	307112	151821209	3449351	1219	7443											
CETN2	1069	broad.mit.edu	37	chrX	151996243	151996243	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaacacttccaaacggctAaaataggctcaaggtcacta	7	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151996243	G	G	151996243	1	3	7	0	1	0	0	0	0	0	0	0	3305	377	13	5		5	CETN2	23	151996243	3'UTR	SNP	A	TCGA-05-4390-01A-02D-1753-08	175034	151996243	3274317	1220	7444											
ATP2B3	492	broad.mit.edu	37	chrX	152825205	152825205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggactctcctctcaaagccGtgcagatgttgtgggtgaac	12	10	2	2			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152825205	T	T	152825205	3	4	7	1	0	0	0	0	1	0	0	0	1145	1145	40	3	2706	3	ATP2B3	23	152825205	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	828962	152825205	2445355	1221	7445											
DUSP9	1852	broad.mit.edu	37	chrX	152914962	152914962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctatctgggcagtgccCgggattccgccaatttggag	12	12	2	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152914962	A	A	152914962	2	1	7	1	0	0	0	0	0	0	0	1	4872	643	23	1		1	DUSP9	23	152914962	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	89757	152914962	2355598	1222	7446											
PLXNB3	5365	broad.mit.edu	37	chrX	153039215	153039215	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtccccgaccatgcccAtgcccagtggggaggaggag	16	13	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153039215	G	G	153039215	1	3	7	0	1	0	0	0	0	0	0	0	12220	232	8	5		5	PLXNB3	23	153039215	Intron	SNP	A	TCGA-05-4390-01A-02D-1753-08	124253	153039215	2231345	1223	7447											
AVPR2	554	broad.mit.edu	37	chrX	153171777	153171777	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccaagactgtgaggatgAcgctagtgattgtggtcgtc	15	7	0	4			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153171777	G	G	153171777	3	3	7	1	0	0	0	0	1	0	0	0	1238	275	10	5	823	5	AVPR2	23	153171777	Missense_Mutation	SNP	A	TCGA-05-4390-01A-02D-1753-08	132562	153171777	2098783	1224	7448											
RENBP	5973	broad.mit.edu	37	chrX	153209095	153209095	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaccttgaccgggcggCcgtcccgagtcagcacaaag	13	15	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153209095	T	T	153209095	3	4	7	1	0	0	0	0	1	0	0	0	13333	739	26	4	946	4	RENBP	23	153209095	Missense_Mutation	SNP	C	TCGA-05-4390-01A-02D-1753-08	37318	153209095	2061465	1225	7449											
HCFC1	3054	broad.mit.edu	37	chrX	153217335	153217335	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgccacagtgctggggacCgtgccggccagctcattgag	15	13	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153217335	A	A	153217335	2	1	7	1	0	0	0	0	0	0	0	1	7057	639	23	1		1	HCFC1	23	153217335	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	8240	153217335	2053225	1226	7450											
HCFC1	3054	broad.mit.edu	37	chrX	153222985	153222985	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggcaggggccctttggtCtgaaagggggaagcaggtgc	19	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153222985	T	T	153222985	5	4	7	1	0	0	0	0	0	0	1	0	7057	927	32	4	4030	4	HCFC1	23	153222985	Splice_Site	SNP	C	TCGA-05-4390-01A-02D-1753-08	5650	153222985	2047575	1227	7451											
FLNA	2316	broad.mit.edu	37	chrX	153581773	153581773	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtctctgagatgttgatgggGatgtcggcagcagagccgac	16	8	1	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153581773	C	C	153581773	3	2	7	1	0	0	0	0	1	0	0	0	5991	1164	41	4	2078	4	FLNA	23	153581773	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	358788	153581773	1688787	1228	7452											
FLNA	2316	broad.mit.edu	37	chrX	153590330	153590332	+	Intron	DEL	GTG	-	-													ctggggactcggtgactgtaGtggagggtgtggctacctgc							TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153590332	-	-	153590330	6	5	7	0	1	1	0	1	0	0	0	0	5991	1044	36	0		0	FLNA	23	153590330	Intron	DEL	GTG	TCGA-05-4390-01A-02D-1753-08	8557	153590330	1680230	1229	7453											
FLNA	2316	broad.mit.edu	37	chrX	153593925	153593925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttgcctcccacagggcCgggctgtcaggattggtggg	15	13	1	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153593925	A	A	153593925	1	1	7	0	1	0	0	0	0	0	0	0	5991	667	23	1		1	FLNA	23	153593925	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	3595	153593925	1676635	1230	7454											
TAZ	6901	broad.mit.edu	37	chrX	153641776	153641776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggggcagggtggtggagCggggtgcagggggcaggact	25	6	0	0			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153641776	A	A	153641776	1	1	7	0	1	0	0	0	0	0	0	0	15715	783	27	3		3	TAZ	23	153641776	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	47851	153641776	1628784	1231	7455											
SLC10A3	8273	broad.mit.edu	37	chrX	153716929	153716929	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttatagcactcacgttcttGatggtcagcacctctgtgtc	9	11	4	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153716929	T	T	153716929	2	4	7	1	0	0	0	0	0	0	0	1	14488	1280	45	3		3	SLC10A3	23	153716929	Silent	SNP	G	TCGA-05-4390-01A-02D-1753-08	75153	153716929	1553631	1232	7456											
IKBKG	8517	broad.mit.edu	37	chrX	153780355	153780355	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgccttcagaacagggCgctcctgagaccctccagcg	10	17	1	2	rs149511938	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153780355	A	A	153780355	2	1	7	1	0	0	0	0	0	0	0	1	7683	755	27	3		3	IKBKG	23	153780355	Silent	SNP	C	TCGA-05-4390-01A-02D-1753-08	63426	153780355	1490205	1233	7457											
GAB3	139716	broad.mit.edu	37	chrX	153927787	153927787	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcggggagaacctgcatGgctgcaaaagaatagataca	11	8	0	3			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153927787	T	T	153927787	3	4	7	1	0	0	0	0	1	0	0	0	6210	1362	47	2	656	2	GAB3	23	153927787	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	147432	153927787	1342773	1234	7458											
DKC1	1736	broad.mit.edu	37	chrX	154001249	154001249	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttctcataatggagtatttCctccatatgcacatcctgag	6	11	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154001249	A	A	154001249	1	1	7	0	1	0	0	0	0	0	0	0	4582	870	30	3		3	DKC1	23	154001249	Intron	SNP	C	TCGA-05-4390-01A-02D-1753-08	73462	154001249	1269311	1235	7459											
DKC1	1736	broad.mit.edu	37	chrX	154004598	154004598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggccgagcctggagatgGggtgtgtggaaacacgttca	18	8	1	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154004598	T	T	154004598	3	4	7	1	0	0	0	0	1	0	0	0	4582	1246	43	2	1529	2	DKC1	23	154004598	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	3349	154004598	1265962	1236	7460											
F8	2157	broad.mit.edu	37	chrX	154065972	154065972	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtagcgagtcagtaacGgtgggtctagagagttcacc	15	7	3	1	rs137852472		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154065972	C	C	154065972	3	2	7	1	0	0	0	0	1	0	0	0	5393	1116	39	4	103	4	F8	23	154065972	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	61374	154065972	1204588	1237	7461											
F8	2157	broad.mit.edu	37	chrX	154090221	154090221	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagcttccactgatattcTagggctactgtcatcataat	7	10	3	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154090221	C	C	154090221	1	2	7	0	1	0	0	0	0	0	0	0	5393	1537	53	5		5	F8	23	154090221	Intron	SNP	T	TCGA-05-4390-01A-02D-1753-08	24249	154090221	1180339	1238	7462											
F8	2157	broad.mit.edu	37	chrX	154225253	154225253	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtattttactcaccctcaGaagctttccagtaggataca	8	10	2	1			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154225253	A	A	154225253	3	1	7	1	0	0	0	0	1	0	0	0	5393	942	33	4	6796	4	F8	23	154225253	Missense_Mutation	SNP	G	TCGA-05-4390-01A-02D-1753-08	135032	154225253	1045307	1239	7463											
C1orf187	374946	broad.mit.edu	37	chr1	11766418	11766418	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacctgggacccctgccCggaacctccctgagaatcac	9	17	1	1	rs150554919		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11766418	A	A	11766418	2	1	8	1	0	0	0	0	0	0	0	1	2041	643	23	1		1	C1orf187	1	11766418	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08		11766418	237484203	1	7464											
TNFRSF8	943	broad.mit.edu	37	chr1	12140164	12140164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcatgcaccaccatgCccggcttatttttgtatttt	7	11	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12140164	A	A	12140164	1	1	8	0	1	0	0	0	0	0	0	0	16422	754	26	3		3	TNFRSF8	1	12140164	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	373746	12140164	237110457	2	7465											
C1orf158	93190	broad.mit.edu	37	chr1	12815789	12815789	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggagtggcaactgggacaCtcaggcctggaccccaccca	13	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12815789	G	G	12815789	1	3	8	0	1	0	0	0	0	0	0	0	2027	580	20	4		4	C1orf158	1	12815789	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	675625	12815789	236434832	3	7466											
KAZ	23254	broad.mit.edu	37	chr1	15361393	15361394	+	Intron	DEL	CC	-	-													caccgcaaggtcagccgccgCcctgccctcccctcccctcc							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15361394	-	-	15361393	6	5	8	0	1	1	0	1	0	0	0	0	8058	754	26	0		0	KAZ	1	15361393	Intron	DEL	CC	TCGA-05-4395-01A-01D-1265-08	2545604	15361393	233889228	4	7467											
KAZ	23254	broad.mit.edu	37	chr1	15420685	15420685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgttgcagactcggacaGccagtgcagccccacgcggc	14	14	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15420685	T	T	15420685	3	4	8	1	0	0	0	0	1	0	0	0	8058	971	34	3	1522	3	KAZ	1	15420685	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	59292	15420685	233829936	5	7468											
DDI2	84301	broad.mit.edu	37	chr1	15964985	15964985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacatctttacctgacacGggagaaggggaggctcaagc	12	11	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15964985	T	T	15964985	1	4	8	0	1	0	0	0	0	0	0	0	4362	1131	39	1		1	DDI2	1	15964985	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	544300	15964985	233285636	6	7469											
FBLIM1	54751	broad.mit.edu	37	chr1	16091771	16091771	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagaccacgtcagaggcaGaggtggggaggaaagggcag	20	6	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16091771	C	C	16091771	1	2	8	0	1	0	0	0	0	0	0	0	5754	957	33	4		4	FBLIM1	1	16091771	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	126786	16091771	233158850	7	7470											
SPEN	23013	broad.mit.edu	37	chr1	16261724	16261724	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcccagcaaactgcctacaGaagtcaaccatgtcccctcg	7	16	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16261724	A	A	16261724	3	1	8	1	0	0	0	0	1	0	0	0	15156	943	33	4	9031	4	SPEN	1	16261724	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	169953	16261724	232988897	8	7471											
ZBTB40	9923	broad.mit.edu	37	chr1	22853015	22853015	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttagcaccaaccaacacAgtctcacctagaaaacagat	5	13	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22853015	T	T	22853015	1	4	8	0	1	0	0	0	0	0	0	0	17668	203	7	5		5	ZBTB40	1	22853015	3'UTR	SNP	A	TCGA-05-4395-01A-01D-1265-08	6591291	22853015	226397606	9	7472											
NIPAL3	57185	broad.mit.edu	37	chr1	24776161	24776161	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctgagatggcaggagggaGatcaagtcctagaaaccaga	13	9	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24776161	T	T	24776161	1	4	8	0	1	0	0	0	0	0	0	0	10521	957	33	3		3	NIPAL3	1	24776161	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1923146	24776161	224474460	10	7473											
SLC30A2	7780	broad.mit.edu	37	chr1	26372278	26372278	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaccactgctaggatggcaAatgcggaggtgcgtcggctg	15	10	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26372278	T	T	26372278	1	4	8	0	1	0	0	0	0	0	0	0	14669	29	1	5		5	SLC30A2	1	26372278	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	1596117	26372278	222878343	11	7474											
SYTL1	84958	broad.mit.edu	37	chr1	27679907	27679907	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgcgccaggcttgtgccGagctctccctctgggaccat	11	16	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27679907	A	A	27679907	3	1	8	1	0	0	0	0	1	0	0	0	15601	1059	37	4	1491	4	SYTL1	1	27679907	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1307629	27679907	221570714	12	7475											
S100PBP	64766	broad.mit.edu	37	chr1	33292039	33292039	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagctgagactcctgacctCttcaaactacctcagctaag	7	13	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33292039	G	G	33292039	2	3	8	1	0	0	0	0	0	0	0	1	13902	900	32	4		4	S100PBP	1	33292039	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	5612132	33292039	215958582	13	7476											
ADC	113451	broad.mit.edu	37	chr1	33585818	33585818	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccggagaatcccagcgggGcctcagagatgcatctggga	14	13	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33585818	C	C	33585818	1	2	8	0	1	0	0	0	0	0	0	0	287	1218	42	4		4	ADC	1	33585818	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	293779	33585818	215664803	14	7477											
CSMD2	114784	broad.mit.edu	37	chr1	34180202	34180202	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaccaacacaccttggcaGaggcgagctccacaggcgcc	10	17	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34180202	T	T	34180202	3	4	8	1	0	0	0	0	1	0	0	0	3979	933	33	3	7388	3	CSMD2	1	34180202	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	594384	34180202	215070419	15	7478											
GJB4	127534	broad.mit.edu	37	chr1	35227576	35227576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaccatatgtcctctccCagggagggcaccctgaggat	11	15	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35227576	A	A	35227576	3	1	8	1	0	0	0	0	1	0	0	0	6474	595	21	2	723	2	GJB4	1	35227576	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1047374	35227576	214023045	16	7479											
ZMYM6	9204	broad.mit.edu	37	chr1	35477543	35477543	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgtatatagttccatttGacatggctaggtgatactga	10	6	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35477543	C	C	35477543	4	2	8	1	0	0	0	0	0	1	0	0	17830	1294	45	4	3003	4	ZMYM6	1	35477543	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	249967	35477543	213773078	17	7480											
GRIK3	2899	broad.mit.edu	37	chr1	37346036	37346036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggtgcgctggggctgaGtgagatatgagtgccgctgg	20	6	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37346036	T	T	37346036	1	4	8	0	1	0	0	0	0	0	0	0	6841	1044	36	3		3	GRIK3	1	37346036	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1868493	37346036	211904585	18	7481											
MEAF6	64769	broad.mit.edu	37	chr1	37979055	37979075	+	In_Frame_Del	DEL	GAATAATATTGCCATACATCT	-	-													cagataccgatcccagccacGaataatattgccatacatct							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37979075	-	-	37979055	7	5	8	1	0	1	0	1	0	0	0	0	9514	1058	37	0	458	0	MEAF6	1	37979055	In_Frame_Del	DEL	GAATAATATTGCCATACATCT	TCGA-05-4395-01A-01D-1265-08	633019	37979055	211271566	19	7482											
MACF1	23499	broad.mit.edu	37	chr1	39844179	39844179	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaggcagtgtaaacggAtaccacacctgcaaaggtga	11	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39844179	G	G	39844179	2	3	8	1	0	0	0	0	0	0	0	1	9232	320	12	5		5	MACF1	1	39844179	Silent	SNP	A	TCGA-05-4395-01A-01D-1265-08	1865124	39844179	209406442	20	7483											
MYCL1	4610	broad.mit.edu	37	chr1	40363447	40363447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacctcttcttggggacccCtctctgaagcctcttcttgg	9	14	5	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40363447	A	A	40363447	3	1	8	1	0	0	0	0	1	0	0	0	10114	681	24	2	406	2	MYCL1	1	40363447	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	519268	40363447	208887174	21	7484											
KIF2C	11004	broad.mit.edu	37	chr1	45220380	45220380	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggggtctgagagcacttaTatcttaacagtctgcccttt	9	9	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45220380	A	A	45220380	1	1	8	0	1	0	0	0	0	0	0	0	8369	1421	49	5		5	KIF2C	1	45220380	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	4856933	45220380	204030241	22	7485											
ZCCHC11	23318	broad.mit.edu	37	chr1	52901105	52901105	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctgaaccagccacctgttGagcatttacaaggttgcgga	11	10	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52901105	A	A	52901105	4	1	8	1	0	0	0	0	0	1	0	0	17706	1299	45	4	758	4	ZCCHC11	1	52901105	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	7680725	52901105	196349516	23	7486											
PODN	127435	broad.mit.edu	37	chr1	53535678	53535678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgcggaggaggagccgGtgctggtactgagccctgag	17	8	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53535678	T	T	53535678	3	4	8	1	0	0	0	0	1	0	0	0	12273	1261	44	3	301	3	PODN	1	53535678	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	634573	53535678	195714943	24	7487											
PPAP2B	8613	broad.mit.edu	37	chr1	57004312	57004312	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaccatggctaaactggaaGagtctgcagtgttccccagc	10	11	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57004312	A	A	57004312	1	1	8	0	1	0	0	0	0	0	0	0	12387	957	33	4		4	PPAP2B	1	57004312	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3468634	57004312	192246309	25	7488											
ITGB3BP	23421	broad.mit.edu	37	chr1	63955734	63955734	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaaaccttacaataagtaGaaaagaatgttcaactaacc	5	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63955734	C	C	63955734	1	2	8	0	1	0	0	0	0	0	0	0	7966	957	33	4		4	ITGB3BP	1	63955734	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6951422	63955734	185294887	26	7489											
CACHD1	57685	broad.mit.edu	37	chr1	64936557	64936557	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgacttctccatcctggacGaggcgcaagtgctggcgagc	13	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64936557	A	A	64936557	1	1	8	0	1	0	0	0	0	0	0	0	2563	1073	37	4		4	CACHD1	1	64936557	5'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	980823	64936557	184314064	27	7490											
PDE4B	5142	broad.mit.edu	37	chr1	66833286	66833286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggttcttgaaataatttGgagagaactaggtctgattt	12	3	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66833286	T	T	66833286	1	4	8	0	1	0	0	0	0	0	0	0	11734	1363	47	2		2	PDE4B	1	66833286	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1896729	66833286	182417335	28	7491											
MSH4	4438	broad.mit.edu	37	chr1	76344974	76344974	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtactaatctaagagtgAtttagatgcttttgcagaaa	8	4	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76344974	T	T	76344974	1	4	8	0	1	0	0	0	0	0	0	0	9966	348	12	5		5	MSH4	1	76344974	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	9511688	76344974	172905647	29	7492											
LPHN2	23266	broad.mit.edu	37	chr1	82452662	82452662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctataacacattgctcGctgaaacagttgtatgtaat	6	10	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82452662	T	T	82452662	1	4	8	0	1	0	0	0	0	0	0	0	9003	1102	38	3		3	LPHN2	1	82452662	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6107688	82452662	166797959	30	7493											
GBP6	163351	broad.mit.edu	37	chr1	89834209	89834209	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctatacagattcttgaaaaGatttctcagccagtggtggt	10	7	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89834209	C	C	89834209	3	2	8	1	0	0	0	0	1	0	0	0	6340	933	33	4	101	4	GBP6	1	89834209	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	7381547	89834209	159416412	31	7494											
HFM1	164045	broad.mit.edu	37	chr1	91727809	91727809	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcttacctgaaatcaacTtcctttttacattcactgtt	3	10	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91727809	C	C	91727809	2	2	8	1	0	0	0	0	0	0	0	1	7150	1606	56	5		5	HFM1	1	91727809	Silent	SNP	T	TCGA-05-4395-01A-01D-1265-08	1893600	91727809	157522812	32	7495											
HFM1	164045	broad.mit.edu	37	chr1	91841230	91841230	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcactggtctatggctctCatccattttcagacacacag	6	12	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91841230	T	T	91841230	3	4	8	1	0	0	0	0	1	0	0	0	7150	835	29	4	2969	4	HFM1	1	91841230	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	113421	91841230	157409391	33	7496											
COL11A1	1301	broad.mit.edu	37	chr1	103354041	103354041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagcacttttggcagaatGtgctttttgtctatcttata	7	7	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103354041	A	A	103354041	1	1	8	0	1	0	0	0	0	0	0	0	3699	1392	48	4		4	COL11A1	1	103354041	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	11512811	103354041	145896580	34	7497											
COL11A1	1301	broad.mit.edu	37	chr1	103379181	103379181	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacttaaaaataaattagtGcatttactcaccggttgacc	5	8	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103379181	C	C	103379181	1	2	8	0	1	0	0	0	0	0	0	0	3699	1334	46	4		4	COL11A1	1	103379181	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	25140	103379181	145871440	35	7498											
COL11A1	1301	broad.mit.edu	37	chr1	103427520	103427520	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatgaatccatatgaattGaataccaataggaggagata	8	4	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103427520	T	T	103427520	1	4	8	0	1	0	0	0	0	0	0	0	3699	1305	45	3		3	COL11A1	1	103427520	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	48339	103427520	145823101	36	7499											
PRPF38B	55119	broad.mit.edu	37	chr1	109241695	109241695	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttaagcttgaggacatgAataaataatgctgttgaaag	10	5	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109241695	G	G	109241695	1	3	8	0	1	0	0	0	0	0	0	0	12674	261	9	5		5	PRPF38B	1	109241695	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	5814175	109241695	140008926	37	7500											
FNDC7	163479	broad.mit.edu	37	chr1	109276198	109276198	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaaaactaaccctgaactCatatctgtgaattaagatgc	5	9	3	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109276198	G	G	109276198	1	3	8	0	1	0	0	0	0	0	0	0	6031	841	29	4		4	FNDC7	1	109276198	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	34503	109276198	139974423	38	7501											
EPS8L3	79574	broad.mit.edu	37	chr1	110293406	110293406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcagggacccaagtgtcCtcaccgtgctgtgaacaaaa	10	13	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110293406	A	A	110293406	3	1	8	1	0	0	0	0	1	0	0	0	5239	681	24	2	143	2	EPS8L3	1	110293406	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1017208	110293406	138957215	39	7502											
FAM40A	85369	broad.mit.edu	37	chr1	110596155	110596155	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggatctaggaaggaattcCtggcatctttctgaggatga	12	6	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110596155	T	T	110596155	1	4	8	0	1	0	0	0	0	0	0	0	5611	696	24	4		4	FAM40A	1	110596155	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	302749	110596155	138654466	40	7503											
SLC6A17	388662	broad.mit.edu	37	chr1	110709673	110709673	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagtgtactgaatgtggCtggtgaggcaggcggcaagc	18	7	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110709673	T	T	110709673	3	4	8	1	0	0	0	0	1	0	0	0	14794	797	28	4	124	4	SLC6A17	1	110709673	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	113518	110709673	138540948	41	7504											
CASQ2	845	broad.mit.edu	37	chr1	116247745	116247745	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctgcctatttcacctcctCagatgctgaacgcaatcatg	6	15	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116247745	G	G	116247745	1	3	8	0	1	0	0	0	0	0	0	0	2707	841	29	4		4	CASQ2	1	116247745	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5538072	116247745	133002876	42	7505											
TRIM45	80263	broad.mit.edu	37	chr1	117654812	117654812	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacttgaactccagtgcaaGataaggcactttgtttttaa	8	8	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117654812	C	C	117654812	1	2	8	0	1	0	0	0	0	0	0	0	16645	957	33	4		4	TRIM45	1	117654812	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	1407067	117654812	131595809	43	7506											
TBX15	6913	broad.mit.edu	37	chr1	119427674	119427674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctgcatgtggctgcccCcgaacatgtgtggtgatgag	14	10	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119427674	A	A	119427674	3	1	8	1	0	0	0	0	1	0	0	0	15774	623	22	2	322	2	TBX15	1	119427674	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1772862	119427674	129822947	44	7507											
HMGCS2	3158	broad.mit.edu	37	chr1	120298351	120298351	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatatttggaaatacagaaCagtacagaggagaacatacc	8	7	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120298351	G	G	120298351	1	3	8	0	1	0	0	0	0	0	0	0	7300	493	17	4		4	HMGCS2	1	120298351	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	870677	120298351	128952270	45	7508											
NBPF9	400818	broad.mit.edu	37	chr1	144621558	144621558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaatgagaaattgcaccCccagctggcagagaagaaac	9	10	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144621558	A	A	144621558	3	1	8	1	0	0	0	0	1	0	0	0	10294	623	22	2	910	2	NBPF9	1	144621558	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	24323207	144621558	104629063	46	7509											
NBPF10	100132406	broad.mit.edu	37	chr1	145281882	145281882	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgtggtccataaactgaGcaggggataatttagcatgt	11	7	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145281882	A	A	145281882	1	1	8	0	1	0	0	0	0	0	0	0	10287	986	34	4		4	NBPF10	1	145281882	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	660324	145281882	103968739	47	7510											
NBPF10	100132406	broad.mit.edu	37	chr1	145359298	145359298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtcattgccacagggaGgacctataggcatatgtagg	13	7	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145359298	T	T	145359298	1	4	8	0	1	0	0	0	0	0	0	0	10287	1015	35	2		2	NBPF10	1	145359298	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	77416	145359298	103891323	48	7511											
HIST2H2BE	8349	broad.mit.edu	37	chr1	149858184	149858184	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggagcggattttgccggttCaggcatggtaagacacagta	14	8	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149858184	G	G	149858184	3	3	8	1	0	0	0	0	1	0	0	0	7246	835	29	4	377	4	HIST2H2BE	1	149858184	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4498886	149858184	99392437	49	7512											
HRNR	388697	broad.mit.edu	37	chr1	152187998	152187998	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtggctggaagactgacctGagctagctccatgttggcca	13	11	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152187998	C	C	152187998	4	2	8	1	0	0	0	0	0	1	0	0	7426	1294	45	4	2449	4	HRNR	1	152187998	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2329814	152187998	97062623	50	7513											
NUP210L	91181	broad.mit.edu	37	chr1	154034178	154034178	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgcagaaaaataccctgtGagaaacaataacatgtagaa	7	7	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154034178	T	T	154034178	1	4	8	0	1	0	0	0	0	0	0	0	10856	1305	45	3		3	NUP210L	1	154034178	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1846180	154034178	95216443	51	7514											
PBXIP1	57326	broad.mit.edu	37	chr1	154923837	154923837	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tactgtgtctcctgggccagGaggctccacaccacaaacat	9	14	1	0	rs144138798		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154923837	A	A	154923837	3	1	8	1	0	0	0	0	1	0	0	0	11590	1174	41	4	1943	4	PBXIP1	1	154923837	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	889659	154923837	94326784	52	7515											
RIT1	6016	broad.mit.edu	37	chr1	155870156	155870156	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atacagcactgcagttcacaGataaacacttcacatcttct	4	12	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155870156	C	C	155870156	1	2	8	0	1	0	0	0	0	0	0	0	13497	957	33	4		4	RIT1	1	155870156	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	946319	155870156	93380465	53	7516											
BCAN	63827	broad.mit.edu	37	chr1	156626175	156626175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctatgggggggacctgtgcGatgttggtgagtgttgaggg	21	4	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156626175	T	T	156626175	3	4	8	1	0	0	0	0	1	0	0	0	1350	1058	37	3	2148	3	BCAN	1	156626175	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	756019	156626175	92624446	54	7517											
OR10K2	391107	broad.mit.edu	37	chr1	158389727	158389727	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagattaattttacaacagGgaaattgttcttctcacaat	5	7	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158389727	A	A	158389727	2	1	8	1	0	0	0	0	0	0	0	1	11008	1219	43	4		4	OR10K2	1	158389727	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	1763552	158389727	90860894	55	7518											
SPTA1	6708	broad.mit.edu	37	chr1	158618419	158618419	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctggcatttcttctcaatCtgctccttcgtgtcatctgc	7	14	5	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158618419	T	T	158618419	2	4	8	1	0	0	0	0	0	0	0	1	15234	912	32	4		4	SPTA1	1	158618419	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	228692	158618419	90632202	56	7519											
B4GALT3	8703	broad.mit.edu	37	chr1	161141691	161141691	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgttgcagcatctcttgaCggaaggcttgggaggaacca	15	9	1	1	rs111614721	byFrequency;by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161141691	T	T	161141691	3	4	8	1	0	0	0	0	1	0	0	0	1277	536	19	4	88	4	B4GALT3	1	161141691	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2523272	161141691	88108930	57	7520											
NR1I3	9970	broad.mit.edu	37	chr1	161207899	161207899	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaatgcctctccccaaactCccacgctgttgctggttttc	8	15	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161207899	A	A	161207899	1	1	8	0	1	0	0	0	0	0	0	0	10716	870	30	3		3	NR1I3	1	161207899	5'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	66208	161207899	88042722	58	7521											
NUF2	83540	broad.mit.edu	37	chr1	163317686	163317686	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcacaattcaaaataaataAgaagcatgaagatgttaagc	7	5	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163317686	T	T	163317686	3	4	8	1	0	0	0	0	1	0	0	0	10842	72	3	5	1124	5	NUF2	1	163317686	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	2109787	163317686	85932935	59	7522											
PRRX1	5396	broad.mit.edu	37	chr1	170699562	170699562	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattcagagtgtttaagaaAgtgggggttgcagttctaga	14	3	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170699562	G	G	170699562	1	3	8	0	1	0	0	0	0	0	0	0	12718	87	3	5		5	PRRX1	1	170699562	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	7381876	170699562	78551059	60	7523											
RC3H1	149041	broad.mit.edu	37	chr1	173934332	173934332	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactaaaatgtacttaataTtattttctagaaatattctc	3	5	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173934332	A	A	173934332	1	1	8	0	1	0	0	0	0	0	0	0	13274	1508	52	5		5	RC3H1	1	173934332	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	3234770	173934332	75316289	61	7524											
C1orf49	84066	broad.mit.edu	37	chr1	178490351	178490351	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttgtgccgtttctgtcctCtgcaggagaaatgtttgttg	11	8	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178490351	A	A	178490351	1	1	8	0	1	0	0	0	0	0	0	0	2063	928	32	3		3	C1orf49	1	178490351	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	4556019	178490351	70760270	62	7525											
CACNA1E	777	broad.mit.edu	37	chr1	181707613	181707613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttagatgggtcacctGtctgctccttaggctagagc	13	9	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181707613	T	T	181707613	1	4	8	0	1	0	0	0	0	0	0	0	2568	1392	48	3		3	CACNA1E	1	181707613	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3217262	181707613	67543008	63	7526											
C1orf14	81626	broad.mit.edu	37	chr1	182869054	182869054	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaactaccatttcagtggGgtatgagaatcatgtattaa	9	5	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182869054	T	T	182869054	1	4	8	0	1	0	0	0	0	0	0	0	2020	1247	43	2		2	C1orf14	1	182869054	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	1161441	182869054	66381567	64	7527											
EDEM3	80267	broad.mit.edu	37	chr1	184681006	184681006	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccagttctgtatattcCgaggtctacaagagaaaaac	7	9	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184681006	A	A	184681006	2	1	8	1	0	0	0	0	0	0	0	1	4953	639	23	1		1	EDEM3	1	184681006	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	1811952	184681006	64569615	65	7528											
CFH	3075	broad.mit.edu	37	chr1	196694524	196694524	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggctcccattgcctgtaatCtaatgaattaagtcaaatat	7	8	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196694524	A	A	196694524	1	1	8	0	1	0	0	0	0	0	0	0	3313	928	32	3		3	CFH	1	196694524	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	12013518	196694524	52556097	66	7529											
CFHR5	81494	broad.mit.edu	37	chr1	196946660	196946660	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actttgatgttttccacaaaGggctttactaaactagcttc	6	9	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196946660	C	C	196946660	1	2	8	0	1	0	0	0	0	0	0	0	3318	1015	35	4		4	CFHR5	1	196946660	5'Flank	SNP	G	TCGA-05-4395-01A-01D-1265-08	252136	196946660	52303961	67	7530											
F13B	2165	broad.mit.edu	37	chr1	197021763	197021763	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagaacattattattttaCcttttctagtacataaagga	5	6	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197021763	T	T	197021763	5	4	8	1	0	0	0	0	0	0	1	0	5384	521	18	4	445	4	F13B	1	197021763	Splice_Site	SNP	C	TCGA-05-4395-01A-01D-1265-08	75103	197021763	52228858	68	7531											
ASPM	259266	broad.mit.edu	37	chr1	197101454	197101454	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaggattgtaggacaaCagccaattcaggactttctg	9	9	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197101454	G	G	197101454	2	3	8	1	0	0	0	0	0	0	0	1	1060	465	17	4		4	ASPM	1	197101454	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	79691	197101454	52149167	69	7532											
CRB1	23418	broad.mit.edu	37	chr1	197446916	197446916	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaacaaaagggcaactcaGggaacctacagccccagccg	9	15	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197446916	A	A	197446916	2	1	8	1	0	0	0	0	0	0	0	1	3880	991	35	4		4	CRB1	1	197446916	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	345462	197446916	51803705	70	7533											
FAM58B	339521	broad.mit.edu	37	chr1	200182760	200182760	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggacgccagagagggtgcCgcagcgccggcagccagggt	19	12	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200182760	T	T	200182760	2	4	8	1	0	0	0	0	0	0	0	1	5642	639	23	4		4	FAM58B	1	200182760	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	2735844	200182760	49067861	71	7534											
KIF21B	23046	broad.mit.edu	37	chr1	200943165	200943165	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcagatcgaagtggggaaaGagagggaaaaggaaagaggg	18	3	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200943165	C	C	200943165	1	2	8	0	1	0	0	0	0	0	0	0	8359	957	33	4		4	KIF21B	1	200943165	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	760405	200943165	48307456	72	7535											
ATP2B4	493	broad.mit.edu	37	chr1	203669175	203669175	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcccagattgtacagagctGaagacttgtaaagagtctcc	9	10	1	5			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203669175	C	C	203669175	1	2	8	0	1	0	0	0	0	0	0	0	1146	1305	45	4		4	ATP2B4	1	203669175	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2726010	203669175	45581446	73	7536											
HHAT	55733	broad.mit.edu	37	chr1	210847693	210847693	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctactcccacgtgggcattgCctgggcccagacctacgcca	10	17	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210847693	T	T	210847693	3	4	8	1	0	0	0	0	1	0	0	0	7156	739	26	4	1594	4	HHAT	1	210847693	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	7178518	210847693	38402928	74	7537											
KCNH1	3756	broad.mit.edu	37	chr1	211035408	211035408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggatatatacttttgtGctgtttcttgaccaggccaa	10	7	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211035408	T	T	211035408	1	4	8	0	1	0	0	0	0	0	0	0	8101	1334	46	3		3	KCNH1	1	211035408	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	187715	211035408	38215213	75	7538											
USH2A	7399	broad.mit.edu	37	chr1	215802231	215802231	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcttgtcttgaatgtccatGagctggctgacgctgcggtg	13	9	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215802231	A	A	215802231	2	1	8	1	0	0	0	0	0	0	0	1	17162	1277	45	4		4	USH2A	1	215802231	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	4766823	215802231	33448390	76	7539											
EPHX1	2052	broad.mit.edu	37	chr1	226032757	226032757	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtgggtgggccagctgatCtcacccccaggcgctttaac	12	13	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226032757	G	G	226032757	1	3	8	0	1	0	0	0	0	0	0	0	5221	928	32	4		4	EPHX1	1	226032757	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	10230526	226032757	23217864	77	7540											
PYCR2	29920	broad.mit.edu	37	chr1	226110141	226110141	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctggctatgccaaggcctCccagggagcagctgaacccc	12	16	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226110141	T	T	226110141	1	4	8	0	1	0	0	0	0	0	0	0	12964	870	30	4		4	PYCR2	1	226110141	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	77384	226110141	23140480	78	7541											
C1orf35	79169	broad.mit.edu	37	chr1	228289088	228289093	+	In_Frame_Del	DEL	TCTTTG	-	-													cctcagctggccgcctgtgcTctttgtctttcttcttcttc							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	228289093	-	-	228289088	7	5	8	1	0	1	0	1	0	0	0	0	2060	1551	54	0	179	0	C1orf35	1	228289088	In_Frame_Del	DEL	TCTTTG	TCGA-05-4395-01A-01D-1265-08	2178947	228289088	20961533	79	7542											
GUK1	2987	broad.mit.edu	37	chr1	228333279	228333279	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaagagcaccctgctgaaGaggctgctccaggagcacag	15	11	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228333279	A	A	228333279	2	1	8	1	0	0	0	0	0	0	0	1	6965	933	33	4		4	GUK1	1	228333279	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	44191	228333279	20917342	80	7543											
RHOU	58480	broad.mit.edu	37	chr1	228873641	228873641	+	Intron	DEL	T	-	-													gagggtgggcaggggccaggTtattggccggcaggaagcag					rs35672194		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	228873641	-	-	228873641	6	5	8	0	1	1	0	1	0	0	0	0	13454	1740	60	0		0	RHOU	1	228873641	Intron	DEL	T	TCGA-05-4395-01A-01D-1265-08	540362	228873641	20376980	81	7544											
SLC35F3	148641	broad.mit.edu	37	chr1	234454683	234454683	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtggattttcagttcttTtattgagtaagtgctaatca	8	4	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234454683	C	C	234454683	2	2	8	1	0	0	0	0	0	0	0	1	14704	1838	64	5		5	SLC35F3	1	234454683	Silent	SNP	T	TCGA-05-4395-01A-01D-1265-08	5581042	234454683	14795938	82	7545											
OR11L1	391189	broad.mit.edu	37	chr1	248004695	248004695	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaatctgattgcgcccacaGaagtccaacctggaaatcat	7	11	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248004695	A	A	248004695	2	1	8	1	0	0	0	0	0	0	0	1	11024	933	33	4		4	OR11L1	1	248004695	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	13550012	248004695	1245926	83	7546											
OR2T4	127074	broad.mit.edu	37	chr1	248525769	248525769	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctacatgctccccagctCctaccacacccctgagaagg	6	19	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248525769	T	T	248525769	3	4	8	1	0	0	0	0	1	0	0	0	11121	855	30	4	889	4	OR2T4	1	248525769	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	521074	248525769	724852	84	7547											
ZNF692	55657	broad.mit.edu	37	chr1	249150836	249150836	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacataaagttctaaggtctGaagtgatgggagactcctct	10	8	3	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249150836	A	A	249150836	1	1	8	0	1	0	0	0	0	0	0	0	18224	1305	45	4		4	ZNF692	1	249150836	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	625067	249150836	99785	85	7548											
NBAS	51594	broad.mit.edu	37	chr2	15519895	15519895	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagcactgcagtgcatcaTctgtccagccaggtggatgt	11	11	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15519895	C	C	15519895	3	2	8	1	0	0	0	0	1	0	0	0	10280	1435	50	5	3786	5	NBAS	2	15519895	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08		15519895	227679478	86	7549											
APOB	338	broad.mit.edu	37	chr2	21224558	21224558	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttctgtgctatgtgaaaGttcaattggaaaagaagaat	9	3	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21224558	T	T	21224558	1	4	8	0	1	0	0	0	0	0	0	0	787	1044	36	3		3	APOB	2	21224558	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	5704663	21224558	221974815	87	7550											
APOB	338	broad.mit.edu	37	chr2	21235078	21235078	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggaagcagtatttttaatGatgccactttgcagatcaga	10	6	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21235078	T	T	21235078	2	4	8	1	0	0	0	0	0	0	0	1	787	1280	45	3		3	APOB	2	21235078	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	10520	21235078	221964295	88	7551											
WDR43	23160	broad.mit.edu	37	chr2	29136679	29136679	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcaagaatgtaagaaacaAaggtgcggagtggtagggtc	14	4	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29136679	G	G	29136679	1	3	8	0	1	0	0	0	0	0	0	0	17422	29	1	5		5	WDR43	2	29136679	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	7901601	29136679	214062694	89	7552											
GALNT14	79623	broad.mit.edu	37	chr2	31154839	31154839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcacacaggcagcctaaCagagcaccagggacggctgc	11	13	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31154839	A	A	31154839	1	1	8	0	1	0	0	0	0	0	0	0	6274	493	17	3		3	GALNT14	2	31154839	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2018160	31154839	212044534	90	7553											
GALNT14	79623	broad.mit.edu	37	chr2	31215591	31215591	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagtgttcaactggcagcaGatggtccagcccggttctta	11	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31215591	T	T	31215591	1	4	8	0	1	0	0	0	0	0	0	0	6274	957	33	3		3	GALNT14	2	31215591	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	60752	31215591	211983782	91	7554											
CRIM1	51232	broad.mit.edu	37	chr2	36706813	36706813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaccctgtgaaagtgcctGgggagtgttgccctgtgtgc	14	10	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36706813	T	T	36706813	3	4	8	1	0	0	0	0	1	0	0	0	3905	1348	47	2	1374	2	CRIM1	2	36706813	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	5491222	36706813	206492560	92	7555											
GALM	130589	broad.mit.edu	37	chr2	38958889	38958889	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaccagggtgcatcatgcTgcaagcgggcgggtactaga	14	10	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38958889	A	A	38958889	2	1	8	1	0	0	0	0	0	0	0	1	6267	1567	55	5		5	GALM	2	38958889	Silent	SNP	T	TCGA-05-4395-01A-01D-1265-08	2252076	38958889	204240484	93	7556											
SLC8A1	6546	broad.mit.edu	37	chr2	40402082	40402082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccacccaaggtacttgCcaaattatatttacaattaa	3	11	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40402082	A	A	40402082	1	1	8	0	1	0	0	0	0	0	0	0	14820	754	26	3		3	SLC8A1	2	40402082	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1443193	40402082	202797291	94	7557											
EML4	27436	broad.mit.edu	37	chr2	42531598	42531598	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactttctcatgtactccCcaacagctgtctgtctcttt	6	13	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42531598	T	T	42531598	1	4	8	0	1	0	0	0	0	0	0	0	5141	638	22	4		4	EML4	2	42531598	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2129516	42531598	200667775	95	7558											
ARHGAP25	9938	broad.mit.edu	37	chr2	69045161	69045161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagtgaaagcaggtacccaGgaaataacaattacaacatt	8	7	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69045161	A	A	69045161	1	1	8	0	1	0	0	0	0	0	0	0	876	1015	35	4		4	ARHGAP25	2	69045161	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	26513563	69045161	174154212	96	7559											
CLEC4F	165530	broad.mit.edu	37	chr2	71043249	71043249	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatcccctcttaacctctGgatctcggcactggccttct	7	15	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71043249	A	A	71043249	4	1	8	1	0	0	0	0	0	1	0	0	3548	1357	47	4	521	4	CLEC4F	2	71043249	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1998088	71043249	172156124	97	7560											
DYSF	8291	broad.mit.edu	37	chr2	71795525	71795525	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctgcccaccatggacTgcaccctccttttggaggca	10	16	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71795525	A	A	71795525	1	1	8	0	1	0	0	0	0	0	0	0	4899	1595	55	5		5	DYSF	2	71795525	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	752276	71795525	171403848	98	7561											
CCT7	10574	broad.mit.edu	37	chr2	73479685	73479685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagtctgcgggttcctaGcagtgtcttttggagtacca	13	8	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73479685	T	T	73479685	1	4	8	0	1	0	0	0	0	0	0	0	2989	986	34	3		3	CCT7	2	73479685	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1684160	73479685	169719688	99	7562											
LOXL3	84695	broad.mit.edu	37	chr2	74763216	74763216	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgttcttgtgggggcaCttccagagggagagctcctg	16	8	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74763216	T	T	74763216	2	4	8	1	0	0	0	0	0	0	0	1	8988	564	20	4		4	LOXL3	2	74763216	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	1283531	74763216	168436157	100	7563											
GGCX	2677	broad.mit.edu	37	chr2	85781125	85781125	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcctcttatccccattTatgcctacttcatagtgact	4	14	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85781125	G	G	85781125	1	3	8	0	1	0	0	0	0	0	0	0	6420	1769	61	5		5	GGCX	2	85781125	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	11017909	85781125	157418248	101	7564											
FAHD2B	151313	broad.mit.edu	37	chr2	97749675	97749675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctctctttgcttttcGctaacctaccttgagaaaga	6	12	1	2	rs140595149	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97749675	A	A	97749675	1	1	8	0	1	0	0	0	0	0	0	0	5420	1102	38	4		4	FAHD2B	2	97749675	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	11968550	97749675	145449698	102	7565											
TSGA10	80705	broad.mit.edu	37	chr2	99697698	99697698	+	Intron	DEL	C	-	-													aagaaaatacatctttgctaCcaaacttaagaaaaactaaa							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99697698	-	-	99697698	6	5	8	0	1	1	0	1	0	0	0	0	16742	522	18	0		0	TSGA10	2	99697698	Intron	DEL	C	TCGA-05-4395-01A-01D-1265-08	1948023	99697698	143501675	103	7566											
TSGA10	80705	broad.mit.edu	37	chr2	99720657	99720657	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctgaagggcatactccctCtgtacaaactggtttatggc	9	11	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99720657	A	A	99720657	1	1	8	0	1	0	0	0	0	0	0	0	16742	928	32	3		3	TSGA10	2	99720657	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	22959	99720657	143478716	104	7567											
LYG2	254773	broad.mit.edu	37	chr2	99863100	99863100	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaagaaagaatctgaaaacGatgaaagggggaagccagtc	12	6	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99863100	T	T	99863100	1	4	8	0	1	0	0	0	0	0	0	0	9193	1073	37	3		3	LYG2	2	99863100	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	142443	99863100	143336273	105	7568											
AFF3	3899	broad.mit.edu	37	chr2	100217876	100217876	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtgggcagaggagaggCctgagccaggcagcgcttac	17	9	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100217876	A	A	100217876	1	1	8	0	1	0	0	0	0	0	0	0	358	754	26	3		3	AFF3	2	100217876	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	354776	100217876	142981497	106	7569											
SLC9A2	6549	broad.mit.edu	37	chr2	103317603	103317603	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaaagtcaagtattgtatCtttatataaaaagcttgaaa	5	5	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103317603	G	G	103317603	3	3	8	1	0	0	0	0	1	0	0	0	14826	913	32	4	1691	4	SLC9A2	2	103317603	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	3099727	103317603	139881770	107	7570											
EDAR	10913	broad.mit.edu	37	chr2	109547432	109547432	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacttaccaccaggacgggGagccagggcgtctgcgtgca	14	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109547432	T	T	109547432	2	4	8	1	0	0	0	0	0	0	0	1	4945	1161	41	3		3	EDAR	2	109547432	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	6229829	109547432	133651941	108	7571											
POLR1B	84172	broad.mit.edu	37	chr2	113310160	113310160	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttggggatcttggttaataGaatattaagtagtattacca	10	3	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113310160	A	A	113310160	1	1	8	0	1	0	0	0	0	0	0	0	12305	957	33	4		4	POLR1B	2	113310160	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3762728	113310160	129889213	109	7572											
PCDP1	200373	broad.mit.edu	37	chr2	120387532	120387532	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attccttcttcaatctgcagGtcagacctgtcacataaatt	5	11	5	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120387532	A	A	120387532	5	1	8	1	0	0	0	0	0	0	1	0	11666	1275	44	4	908	4	PCDP1	2	120387532	Splice_Site	SNP	G	TCGA-05-4395-01A-01D-1265-08	7077372	120387532	122811841	110	7573											
CCDC74B	91409	broad.mit.edu	37	chr2	130899687	130899687	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcacccctgtgagcacaTggacgccagcctgctcacct	8	18	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130899687	C	C	130899687	1	2	8	0	1	0	0	0	0	0	0	0	2876	1479	51	5		5	CCDC74B	2	130899687	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	10512155	130899687	112299686	111	7574											
ARHGEF4	50649	broad.mit.edu	37	chr2	131803548	131803548	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggaccccatgctgtcccCaacagctggggtggcactct	12	15	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131803548	T	T	131803548	1	4	8	0	1	0	0	0	0	0	0	0	910	609	21	4		4	ARHGEF4	2	131803548	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	903861	131803548	111395825	112	7575											
PLEKHB2	55041	broad.mit.edu	37	chr2	131951237	131951237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggagaacctgataagccCcacccaaaaggcagagtagg	11	10	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131951237	A	A	131951237	1	1	8	0	1	0	0	0	0	0	0	0	12160	638	22	2		2	PLEKHB2	2	131951237	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	147689	131951237	111248136	113	7576											
LCT	3938	broad.mit.edu	37	chr2	136594656	136594656	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggaccagcggtggaaatGaaatttctatcagactccca	10	9	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136594656	A	A	136594656	2	1	8	1	0	0	0	0	0	0	0	1	8765	1281	45	4		4	LCT	2	136594656	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	4643419	136594656	106604717	114	7577											
LRP1B	53353	broad.mit.edu	37	chr2	141110564	141110564	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctttcttgaaaattctggtCacacacacatttatatgatc	4	9	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141110564	T	T	141110564	3	4	8	1	0	0	0	0	1	0	0	0	9042	826	29	4	2255	4	LRP1B	2	141110564	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4515908	141110564	102088809	115	7578											
LRP1B	53353	broad.mit.edu	37	chr2	141110653	141110653	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattaaggtctagaaaagaaGagctcaaaatagcatcatca	7	7	4	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141110653	C	C	141110653	1	2	8	0	1	0	0	0	0	0	0	0	9042	957	33	4		4	LRP1B	2	141110653	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	89	141110653	102088720	116	7579											
LRP1B	53353	broad.mit.edu	37	chr2	141128318	141128318	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcactgccatccacacagtCatgaattccatcacacagcc	4	16	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141128318	A	A	141128318	3	1	8	1	0	0	0	0	1	0	0	0	9042	826	29	3	2914	3	LRP1B	2	141128318	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	17665	141128318	102071055	117	7580											
LRP1B	53353	broad.mit.edu	37	chr2	142237928	142237928	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcattactatgtaaaattTaatatttcagttgcattgtt	4	4	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142237928	C	C	142237928	1	2	8	0	1	0	0	0	0	0	0	0	9042	1769	61	5		5	LRP1B	2	142237928	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	1109610	142237928	100961445	118	7581											
TNFAIP6	7130	broad.mit.edu	37	chr2	152220649	152220649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttggaggaaaaaaatcCatctttcctaagccctagta	6	10	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152220649	A	A	152220649	1	1	8	0	1	0	0	0	0	0	0	0	16398	609	21	2		2	TNFAIP6	2	152220649	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	9982721	152220649	90978724	119	7582											
TANC1	85461	broad.mit.edu	37	chr2	160031569	160031569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggtcccatcagctggccGcctacagagaccttctgata	10	15	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160031569	T	T	160031569	3	4	8	1	0	0	0	0	1	0	0	0	15663	1087	38	3	1647	3	TANC1	2	160031569	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	7810920	160031569	83167804	120	7583											
CSRNP3	80034	broad.mit.edu	37	chr2	166451720	166451720	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catccacttctagtcattttAcccgtgagtactgaaatcag	6	11	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166451720	C	C	166451720	3	2	8	1	0	0	0	0	1	0	0	0	3999	391	14	5	147	5	CSRNP3	2	166451720	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	6420151	166451720	76747653	121	7584											
SCN9A	6335	broad.mit.edu	37	chr2	167141098	167141098	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcattttcccgttcacCggcagcattggtggggacct	12	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167141098	T	T	167141098	2	4	8	1	0	0	0	0	0	0	0	1	14038	639	23	4		4	SCN9A	2	167141098	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	689378	167141098	76058275	122	7585											
XIRP2	129446	broad.mit.edu	37	chr2	168105626	168105626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacattgttaaaactcaaaGccaaaatcaacacataacag	3	10	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168105626	A	A	168105626	3	1	8	1	0	0	0	0	1	0	0	0	17557	971	34	4	7754	4	XIRP2	2	168105626	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	964528	168105626	75093747	123	7586											
LASS6	253782	broad.mit.edu	37	chr2	169547564	169547564	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accccctggttgtggaatacGaggcattgctggtacaacta	11	10	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169547564	C	C	169547564	2	2	8	1	0	0	0	0	0	0	0	1	8715	1045	37	4		4	LASS6	2	169547564	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	1441938	169547564	73651809	124	7587											
LRP2	4036	broad.mit.edu	37	chr2	170151164	170151164	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aactttccaatcacacttctGactggtgttatagcaggccc	7	12	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170151164	C	C	170151164	3	2	8	1	0	0	0	0	1	0	0	0	9043	1299	45	4	13783	4	LRP2	2	170151164	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	603600	170151164	73048209	125	7588											
C2orf77	129881	broad.mit.edu	37	chr2	170505760	170505760	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgcattttttctccttttCatgttcccagaaaatctgat	4	9	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170505760	T	T	170505760	3	4	8	1	0	0	0	0	1	0	0	0	2216	835	29	4	417	4	C2orf77	2	170505760	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	354596	170505760	72693613	126	7589											
CHRNA1	1134	broad.mit.edu	37	chr2	175622651	175622651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtcctcacaacaatcccGtgaggggagggtgattactg	12	9	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175622651	T	T	175622651	1	4	8	0	1	0	0	0	0	0	0	0	3412	1160	40	3		3	CHRNA1	2	175622651	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	5116891	175622651	67576722	127	7590											
EVX2	344191	broad.mit.edu	37	chr2	176947278	176947278	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccccgtcaggaaggagagtCgctgccggaattgatggggt	17	9	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176947278	T	T	176947278	1	4	8	0	1	0	0	0	0	0	0	0	5337	899	31	4		4	EVX2	2	176947278	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1324627	176947278	66252095	128	7591											
COL3A1	1281	broad.mit.edu	37	chr2	189854960	189854960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaattaaacttaaaaaCagaaagtgttttactactag	6	4	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189854960	A	A	189854960	1	1	8	0	1	0	0	0	0	0	0	0	3720	493	17	3		3	COL3A1	2	189854960	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	12907682	189854960	53344413	129	7592											
COL3A1	1281	broad.mit.edu	37	chr2	189861882	189861882	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtaaataccgaccacttCttctttagggtgctcctggt	8	10	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189861882	A	A	189861882	1	1	8	0	1	0	0	0	0	0	0	0	3720	928	32	3		3	COL3A1	2	189861882	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	6922	189861882	53337491	130	7593											
COL5A2	1290	broad.mit.edu	37	chr2	189925458	189925458	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattatttaaacacttacttGatcacctggttttccacctt	3	10	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189925458	C	C	189925458	3	2	8	1	0	0	0	0	1	0	0	0	3729	1299	45	4	2512	4	COL5A2	2	189925458	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	63576	189925458	53273915	131	7594											
WDR75	84128	broad.mit.edu	37	chr2	190331122	190331122	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcactttgtcctcatgcaaGaataaatttgtggtttcctt	6	8	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190331122	C	C	190331122	1	2	8	0	1	0	0	0	0	0	0	0	17452	957	33	4		4	WDR75	2	190331122	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	405664	190331122	52868251	132	7595											
MYO1B	4430	broad.mit.edu	37	chr2	192275861	192275861	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagagaaactagaagccagtGaactcttcaaagacaagaag	9	7	2	5			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192275861	C	C	192275861	3	2	8	1	0	0	0	0	1	0	0	0	10163	1291	45	4	2938	4	MYO1B	2	192275861	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1944739	192275861	50923512	133	7596											
MYO1B	4430	broad.mit.edu	37	chr2	192275912	192275912	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctaggtattatggctttGctttacccataaaattcagg	7	8	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192275912	A	A	192275912	1	1	8	0	1	0	0	0	0	0	0	0	10163	1334	46	4		4	MYO1B	2	192275912	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	51	192275912	50923461	134	7597											
PGAP1	80055	broad.mit.edu	37	chr2	197784557	197784557	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtatttctcacattattctCtctcagagaaaatattatat	3	7	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197784557	G	G	197784557	1	3	8	0	1	0	0	0	0	0	0	0	11872	928	32	4		4	PGAP1	2	197784557	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5508645	197784557	45414816	135	7598											
CFLAR	8837	broad.mit.edu	37	chr2	202002426	202002426	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtagggcacgaacttctgaAtggaccctttgtcctggatg	13	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202002426	C	C	202002426	1	2	8	0	1	0	0	0	0	0	0	0	3322	116	4	5		5	CFLAR	2	202002426	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	4217869	202002426	41196947	136	7599											
CASP8	841	broad.mit.edu	37	chr2	202131579	202131579	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacagcctctgagctgatTggggcttttttttgtggtac	13	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202131579	C	C	202131579	1	2	8	0	1	0	0	0	0	0	0	0	2703	1827	63	5		5	CASP8	2	202131579	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	129153	202131579	41067794	137	7600											
ERBB4	2066	broad.mit.edu	37	chr2	212566539	212566539	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttattctgattattttatacCatgttggtaattgtaacaac	5	5	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212566539	G	G	212566539	1	3	8	0	1	0	0	0	0	0	0	0	5251	609	21	4		4	ERBB4	2	212566539	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	10434960	212566539	30632834	138	7601											
ABCA12	26154	broad.mit.edu	37	chr2	215874970	215874970	+	Intron	DEL	C	-	-													taggtaagatagaaagaaatCagtcagctaaagtaaatttg							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	215874970	-	-	215874970	6	5	8	0	1	1	0	1	0	0	0	0	30	841	29	0		0	ABCA12	2	215874970	Intron	DEL	C	TCGA-05-4395-01A-01D-1265-08	3308431	215874970	27324403	139	7602											
CCDC108	255101	broad.mit.edu	37	chr2	219892544	219892544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccatgatcttgcccttgGtgtggttcatcaggcacagg	11	12	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219892544	T	T	219892544	3	4	8	1	0	0	0	0	1	0	0	0	2769	1261	44	3	3830	3	CCDC108	2	219892544	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	4017574	219892544	23306829	140	7603											
PTPRN	5798	broad.mit.edu	37	chr2	220166166	220166166	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttgctccctgccttgctGgcaatgaccctatgtctcaa	7	16	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220166166	A	A	220166166	1	1	8	0	1	0	0	0	0	0	0	0	12915	1363	47	4		4	PTPRN	2	220166166	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	273622	220166166	23033207	141	7604											
PTPRN	5798	broad.mit.edu	37	chr2	220167287	220167287	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttggggtgggaccagagtCaaggacttacctggtggaac	17	7	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220167287	G	G	220167287	1	3	8	0	1	0	0	0	0	0	0	0	12915	841	29	4		4	PTPRN	2	220167287	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1121	220167287	23032086	142	7605											
STK11IP	114790	broad.mit.edu	37	chr2	220477819	220477819	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacctccccaggcctctcatCaggtttctcaccaacttcct	4	19	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220477819	T	T	220477819	1	4	8	0	1	0	0	0	0	0	0	0	15406	841	29	4		4	STK11IP	2	220477819	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	310532	220477819	22721554	143	7606											
EPHA4	2043	broad.mit.edu	37	chr2	222308421	222308421	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattaccaaacataggaaaaGtcaagttagctgtacggtct	8	7	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222308421	A	A	222308421	1	1	8	0	1	0	0	0	0	0	0	0	5211	1044	36	4		4	EPHA4	2	222308421	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1830602	222308421	20890952	144	7607											
FARSB	10056	broad.mit.edu	37	chr2	223484533	223484533	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaaagtaatgctgtaagtCaacttctaagagcaatttat	6	5	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223484533	A	A	223484533	1	1	8	0	1	0	0	0	0	0	0	0	5737	841	29	3		3	FARSB	2	223484533	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1176112	223484533	19714840	145	7608											
WDR69	164781	broad.mit.edu	37	chr2	228786358	228786358	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgaatactaacaggagttCatccccattccctacctctt	5	14	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228786358	T	T	228786358	1	4	8	0	1	0	0	0	0	0	0	0	17446	841	29	4		4	WDR69	2	228786358	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5301825	228786358	14413015	146	7609											
TRIP12	9320	broad.mit.edu	37	chr2	230675910	230675910	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaggcaagtgctttctactGactttttatcctattttttt	5	7	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230675910	A	A	230675910	3	1	8	1	0	0	0	0	1	0	0	0	16681	1294	45	4	4241	4	TRIP12	2	230675910	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1889552	230675910	12523463	147	7610											
ALPP	250	broad.mit.edu	37	chr2	233244592	233244592	+	Frame_Shift_Del	DEL	C	-	-													gacgtgcctgcctccgcccgCcaggaggggtgccaggacat							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	233244592	-	-	233244592	7	5	8	1	0	1	0	1	0	0	0	0	548	726	26	0	621	0	ALPP	2	233244592	Frame_Shift_Del	DEL	C	TCGA-05-4395-01A-01D-1265-08	2568682	233244592	9954781	148	7611											
ATG16L1	55054	broad.mit.edu	37	chr2	234201865	234201865	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgctgaattgggggtgggGaattgacaacctttcttttc	13	6	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234201865	T	T	234201865	1	4	8	0	1	0	0	0	0	0	0	0	1095	1189	41	3		3	ATG16L1	2	234201865	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	957273	234201865	8997508	149	7612											
HDAC4	9759	broad.mit.edu	37	chr2	240097978	240097978	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgcccggcctccctccctCtgcccggcctccctccctct	6	25	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240097978	G	G	240097978	1	3	8	0	1	0	0	0	0	0	0	0	7076	928	32	4		4	HDAC4	2	240097978	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5896113	240097978	3101395	150	7613											
NEU4	129807	broad.mit.edu	37	chr2	242756197	242756197	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcttcctcttcttcatcGcggtgctgggccacacgcct	9	17	4	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242756197	A	A	242756197	3	1	8	1	0	0	0	0	1	0	0	0	10439	1087	38	4	359	4	NEU4	2	242756197	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2658219	242756197	443176	151	7614											
GRM7	2917	broad.mit.edu	37	chr3	7620469	7620469	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccattgtccgggcatctgggCgggaactcagctatgttctt	12	11	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7620469	G	G	7620469	3	3	8	1	0	0	0	0	1	0	0	0	6868	759	27	4	1906	4	GRM7	3	7620469	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08		7620469	190401961	152	7615											
ZNF385D	79750	broad.mit.edu	37	chr3	21465382	21465382	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggttaaaggtggcaaaAtgccagaacaaatcaagaaa	10	6	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21465382	T	T	21465382	1	4	8	0	1	0	0	0	0	0	0	0	18004	116	4	5		5	ZNF385D	3	21465382	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	13844913	21465382	176557048	153	7616											
OSBPL10	114884	broad.mit.edu	37	chr3	31871646	31871646	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccccacactgaggtgtctCtggctacagggagacgcaga	13	13	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31871646	A	A	31871646	3	1	8	1	0	0	0	0	1	0	0	0	11369	912	32	3	1715	3	OSBPL10	3	31871646	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	10406264	31871646	166150784	154	7617											
WDR48	57599	broad.mit.edu	37	chr3	39108230	39108230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcatagtatgtctgttctAttacaggattacgtaaaggc	9	6	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39108230	G	G	39108230	1	3	8	0	1	0	0	0	0	0	0	0	17428	464	16	5		5	WDR48	3	39108230	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	7236584	39108230	158914200	155	7618											
MAP4	4134	broad.mit.edu	37	chr3	47957470	47957470	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatgaaagtaggtgcagctGactgccccacatcctgcaga	10	12	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47957470	C	C	47957470	4	2	8	1	0	0	0	0	0	1	0	0	9350	1294	45	4	3022	4	MAP4	3	47957470	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	8849240	47957470	150064960	156	7619											
CELSR3	1951	broad.mit.edu	37	chr3	48697690	48697690	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgggtgttgccgcctgtgAtctggtagctgatggcactg	15	10	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48697690	G	G	48697690	3	3	8	1	0	0	0	0	1	0	0	0	3253	333	12	5	7700	5	CELSR3	3	48697690	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	740220	48697690	149324740	157	7620											
PBRM1	55193	broad.mit.edu	37	chr3	52668615	52668615	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataatgtagaagacatctTaccggatctgttgtagtgat	10	5	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52668615	G	G	52668615	1	3	8	0	1	0	0	0	0	0	0	0	11585	1769	61	5		5	PBRM1	3	52668615	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	3970925	52668615	145353815	158	7621											
CACNA2D3	55799	broad.mit.edu	37	chr3	55003941	55003941	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatggtgctttatgaccgaGggaatgcccttataaacaag	11	7	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55003941	C	C	55003941	1	2	8	0	1	0	0	0	0	0	0	0	2576	1015	35	4		4	CACNA2D3	3	55003941	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2335326	55003941	143018489	159	7622											
CNTN3	5067	broad.mit.edu	37	chr3	74344240	74344240	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaaagtggcacggtaacaCacatacacaatttaatcgga	8	9	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74344240	T	T	74344240	1	4	8	0	1	0	0	0	0	0	0	0	3674	493	17	4		4	CNTN3	3	74344240	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	19340299	74344240	123678190	160	7623											
EPHA6	285220	broad.mit.edu	37	chr3	97200415	97200415	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggggcgcggcgcgtccggcGctgggggactgttgggtcag	22	11	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97200415	C	C	97200415	1	2	8	0	1	0	0	0	0	0	0	0	5213	1102	38	4		4	EPHA6	3	97200415	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	22856175	97200415	100822015	161	7624											
OR5H15	403274	broad.mit.edu	37	chr3	97887574	97887574	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatgcaacattgctgacaGagtttgttctcacaggattt	8	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97887574	T	T	97887574	4	4	8	1	0	0	0	0	0	1	0	0	11255	943	33	3	33	3	OR5H15	3	97887574	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	687159	97887574	100134856	162	7625											
CPOX	1371	broad.mit.edu	37	chr3	98309400	98309400	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actattctttctcgcttttaGatgttatgccctcttatctg	5	10	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98309400	C	C	98309400	1	2	8	0	1	0	0	0	0	0	0	0	3853	957	33	4		4	CPOX	3	98309400	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	421826	98309400	99713030	163	7626											
SENP7	57337	broad.mit.edu	37	chr3	101176517	101176517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttcctttcccaccaatGcacacttgtgcctgcagttt	7	14	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101176517	T	T	101176517	1	4	8	0	1	0	0	0	0	0	0	0	14164	1334	46	3		3	SENP7	3	101176517	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2867117	101176517	96845913	164	7627											
CD47	961	broad.mit.edu	37	chr3	107799048	107799048	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccatcaaaggtgtaaatatCtcttcctttaaatttccact	3	10	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107799048	G	G	107799048	3	3	8	1	0	0	0	0	1	0	0	0	3049	913	32	4	825	4	CD47	3	107799048	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	6622531	107799048	90223382	165	7628											
CHCHD6	84303	broad.mit.edu	37	chr3	126485666	126485666	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaaggagcaggtgtaacCagtatagatctgggacaccc	13	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126485666	T	T	126485666	1	4	8	0	1	0	0	0	0	0	0	0	3351	609	21	4		4	CHCHD6	3	126485666	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	18686618	126485666	71536764	166	7629											
COL6A6	131873	broad.mit.edu	37	chr3	130290238	130290238	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaactcttcaaaagtagGtaagttttgccaactaagtt	7	8	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130290238	T	T	130290238	5	4	8	1	0	0	0	0	0	0	1	0	3735	1275	44	3	3000	3	COL6A6	3	130290238	Splice_Site	SNP	G	TCGA-05-4395-01A-01D-1265-08	3804572	130290238	67732192	167	7630											
CLSTN2	64084	broad.mit.edu	37	chr3	140185616	140185616	+	Intron	DEL	G	-	-													gctgctactcatgcctctgcGggggtggccagtccaatcca							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140185616	-	-	140185616	6	5	8	0	1	1	0	1	0	0	0	0	3594	1131	39	0		0	CLSTN2	3	140185616	Intron	DEL	G	TCGA-05-4395-01A-01D-1265-08	9895378	140185616	57836814	168	7631											
MME	4311	broad.mit.edu	37	chr3	154861315	154861315	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatatggaaaatgctgtgggGaggctttatgtggaagcagc	15	4	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154861315	A	A	154861315	2	1	8	1	0	0	0	0	0	0	0	1	9738	1161	41	4		4	MME	3	154861315	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	14675699	154861315	43161115	169	7632											
SLITRK3	22865	broad.mit.edu	37	chr3	164906989	164906989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttccaggacaccagccaCgggaagatagaggaagtagt	14	8	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164906989	A	A	164906989	3	1	8	1	0	0	0	0	1	0	0	0	14858	536	19	3	1307	3	SLITRK3	3	164906989	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	10045674	164906989	33115441	170	7633											
CLDN1	9076	broad.mit.edu	37	chr3	190027981	190027981	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattgactggggtcataggGtcatagaattcttgaacgat	12	6	3	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190027981	A	A	190027981	2	1	8	1	0	0	0	0	0	0	0	1	3502	1252	44	4		4	CLDN1	3	190027981	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	25120992	190027981	7994449	171	7634											
TNK2	10188	broad.mit.edu	37	chr3	195610174	195610174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggcacttcacagccaCactcacctgcccagagcggg	9	17	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195610174	A	A	195610174	3	1	8	1	0	0	0	0	1	0	0	0	16441	478	17	3	2746	3	TNK2	3	195610174	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	5582193	195610174	2412256	172	7635											
LRCH3	84859	broad.mit.edu	37	chr3	197554103	197554103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcatcaggtaaaccatgGtggaagcatcagataaatca	10	7	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197554103	T	T	197554103	1	4	8	0	1	0	0	0	0	0	0	0	9021	1276	44	3		3	LRCH3	3	197554103	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1943929	197554103	468327	173	7636											
IDUA	3425	broad.mit.edu	37	chr4	997367	997367	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcgccctgcccctgaccCaagggcagctggttctggtc	12	17	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	997367	T	T	997367	4	4	8	1	0	0	0	0	0	1	0	0	7574	595	21	4	1727	4	IDUA	4	997367	Nonsense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08		997367	190156909	174	7637											
KIAA1530	57654	broad.mit.edu	37	chr4	1369427	1369427	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggaagccttgggtgtgtAcccccggccgggtgagcagt	18	10	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1369427	C	C	1369427	1	2	8	0	1	0	0	0	0	0	0	0	8311	406	14	5		5	KIAA1530	4	1369427	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	372060	1369427	189784849	175	7638											
TACC3	10460	broad.mit.edu	37	chr4	1725333	1725333	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtgacctgtacagtgtGtggctggccaggttgcccta	14	9	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1725333	A	A	1725333	1	1	8	0	1	0	0	0	0	0	0	0	15622	1392	48	4		4	TACC3	4	1725333	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	355906	1725333	189428943	176	7639											
EVC	2121	broad.mit.edu	37	chr4	5810099	5810099	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaagcagtggtttaaagAggagcagaaatagctgaagc	12	6	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5810099	G	G	5810099	1	3	8	0	1	0	0	0	0	0	0	0	5327	319	11	5		5	EVC	4	5810099	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	4084766	5810099	185344177	177	7640											
SH3TC1	54436	broad.mit.edu	37	chr4	8220037	8220037	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaccccatcgacgatgcCatgggtggccctgtgatgcc	13	14	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8220037	T	T	8220037	2	4	8	1	0	0	0	0	0	0	0	1	14374	581	21	4		4	SH3TC1	4	8220037	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	2409938	8220037	182934239	178	7641											
CD38	952	broad.mit.edu	37	chr4	15818314	15818314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggggataaaagccaatggTaacaattcataggtccaaat	9	7	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15818314	A	A	15818314	1	1	8	0	1	0	0	0	0	0	0	0	3039	1653	57	5		5	CD38	4	15818314	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	7598277	15818314	175335962	179	7642											
SLIT2	9353	broad.mit.edu	37	chr4	20568941	20568941	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcctatcaaatccgtgtAaaaatgatggcacatgtaat	7	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20568941	T	T	20568941	4	4	8	1	0	0	0	0	0	1	0	0	14854	363	13	5	2888	5	SLIT2	4	20568941	Nonsense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	4750627	20568941	170585335	180	7643											
GABRA4	2557	broad.mit.edu	37	chr4	46981053	46981053	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcgaaaatacctaccatttCaacatcagaaacaggtccaa	4	11	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46981053	T	T	46981053	3	4	8	1	0	0	0	0	1	0	0	0	6223	835	29	4	1424	4	GABRA4	4	46981053	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	26412112	46981053	144173223	181	7644											
NAAA	27163	broad.mit.edu	37	chr4	76851519	76851519	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaggacccaggagagcaatCtgagaacttcctctcccact	8	14	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76851519	G	G	76851519	1	3	8	0	1	0	0	0	0	0	0	0	10221	928	32	4		4	NAAA	4	76851519	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	29870466	76851519	114302757	182	7645											
FRAS1	80144	broad.mit.edu	37	chr4	79205794	79205794	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaactgaggctcagtattgtCaaggagggggtcatgcatgc	14	7	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79205794	T	T	79205794	1	4	8	0	1	0	0	0	0	0	0	0	6102	841	29	4		4	FRAS1	4	79205794	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2354275	79205794	111948482	183	7646											
ABCG2	9429	broad.mit.edu	37	chr4	89018790	89018790	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagaagaagtagttaaccCaactgcctaggtcaccgtat	9	9	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89018790	T	T	89018790	1	4	8	0	1	0	0	0	0	0	0	0	69	609	21	4		4	ABCG2	4	89018790	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	9812996	89018790	102135486	184	7647											
C4orf3	401152	broad.mit.edu	37	chr4	120221638	120221638	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccctccctcgctaaagcctCgccgctcccggagaccatct	7	20	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120221638	T	T	120221638	3	4	8	1	0	0	0	0	1	0	0	0	2283	884	31	4	155	4	C4orf3	4	120221638	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	31202848	120221638	70932638	185	7648											
PDE5A	8654	broad.mit.edu	37	chr4	120488144	120488144	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgaccaacaatttcaGcaacagctaaacctagaggt	8	9	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120488144	A	A	120488144	1	1	8	0	1	0	0	0	0	0	0	0	11738	986	34	4		4	PDE5A	4	120488144	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	266506	120488144	70666132	186	7649											
INPP4B	8821	broad.mit.edu	37	chr4	143235948	143235948	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acattttctgtaagactttgGagtagaaactagtgcagaag	10	5	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143235948	A	A	143235948	1	1	8	0	1	0	0	0	0	0	0	0	7823	1189	41	4		4	INPP4B	4	143235948	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	22747804	143235948	47918328	187	7650											
USP38	84640	broad.mit.edu	37	chr4	144118998	144118998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaatcgactttggtttcCtcttgtgagacctggtgctc	9	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144118998	T	T	144118998	3	4	8	1	0	0	0	0	1	0	0	0	17196	681	24	4	985	4	USP38	4	144118998	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	883050	144118998	47035278	188	7651											
GUCY1A3	2982	broad.mit.edu	37	chr4	156643013	156643013	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtgactgttgattctgCactagtaatttttaattgca	8	5	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156643013	T	T	156643013	1	4	8	0	1	0	0	0	0	0	0	0	6959	725	25	4		4	GUCY1A3	4	156643013	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	12524015	156643013	34511263	189	7652											
MARCH1	55016	broad.mit.edu	37	chr4	164449921	164449921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagactgatacaacttcaggGgggccaccctctgcagatgg	12	12	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164449921	T	T	164449921	2	4	8	1	0	0	0	0	0	0	0	1	9390	1219	43	2		2	MARCH1	4	164449921	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	7806908	164449921	26704355	190	7653											
TLL1	7092	broad.mit.edu	37	chr4	166981071	166981071	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggattttaaaatccagaaGatagttgaaatttagtgctg	9	4	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166981071	T	T	166981071	1	4	8	0	1	0	0	0	0	0	0	0	16068	957	33	3		3	TLL1	4	166981071	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2531150	166981071	24173205	191	7654											
SPOCK3	50859	broad.mit.edu	37	chr4	167983618	167983618	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaacatgtaaaggttttTattttaaaatagttagattc	6	2	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167983618	C	C	167983618	1	2	8	0	1	0	0	0	0	0	0	0	15199	1769	61	5		5	SPOCK3	4	167983618	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	1002547	167983618	23170658	192	7655											
SPOCK3	50859	broad.mit.edu	37	chr4	167983777	167983777	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaattaaatatgaaacacaGaagctgtatacaaacctcta	4	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167983777	A	A	167983777	1	1	8	0	1	0	0	0	0	0	0	0	15199	957	33	4		4	SPOCK3	4	167983777	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	159	167983777	23170499	193	7656											
PLEKHG4B	153478	broad.mit.edu	37	chr5	182248	182248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcctcctccatcctggggtCgctgggcctgcttgtgtcct	12	15	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182248	T	T	182248	3	4	8	1	0	0	0	0	1	0	0	0	12167	893	31	4	3696	4	PLEKHG4B	5	182248	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08		182248	180733012	194	7657											
SLC6A19	340024	broad.mit.edu	37	chr5	1219834	1219834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaagccaggtcacaggGcgttcctgtgagggaggacc	15	10	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1219834	T	T	1219834	1	4	8	0	1	0	0	0	0	0	0	0	14796	1218	42	3		3	SLC6A19	5	1219834	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1037586	1219834	179695426	195	7658											
TRIO	7204	broad.mit.edu	37	chr5	14359323	14359323	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcctaatattgttttgcagGagagcagcccgttccatttt	9	9	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14359323	T	T	14359323	1	4	8	0	1	0	0	0	0	0	0	0	16677	1189	41	3		3	TRIO	5	14359323	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	13139489	14359323	166555937	196	7659											
FBXL7	23194	broad.mit.edu	37	chr5	15928526	15928526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaactgaggcgactggaaGtctcaggctgttacaatatc	11	10	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928526	T	T	15928526	3	4	8	1	0	0	0	0	1	0	0	0	5781	1029	36	3	665	3	FBXL7	5	15928526	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1569203	15928526	164986734	197	7660											
FBXL7	23194	broad.mit.edu	37	chr5	15936487	15936487	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgagggtcaggaatgcCccagggcatccccaggcgtg	17	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15936487	G	G	15936487	1	3	8	0	1	0	0	0	0	0	0	0	5781	638	22	4		4	FBXL7	5	15936487	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	7961	15936487	164978773	198	7661											
CDH18	1016	broad.mit.edu	37	chr5	19473316	19473316	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaagcaaattccacaaGgttgcaagaactgaccccct	8	12	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19473316	C	C	19473316	1	2	8	0	1	0	0	0	0	0	0	0	3133	1015	35	4		4	CDH18	5	19473316	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	3536829	19473316	161441944	199	7662											
PRDM9	56979	broad.mit.edu	37	chr5	23517871	23517871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccactgcactccagcctGggcgacagagggagactccg	14	14	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23517871	T	T	23517871	1	4	8	0	1	0	0	0	0	0	0	0	12569	1363	47	2		2	PRDM9	5	23517871	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4044555	23517871	157397389	200	7663											
SLC45A2	51151	broad.mit.edu	37	chr5	33947450	33947450	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtaaagaccctttaatcCaatgtaggataccaaaactt	6	8	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33947450	A	A	33947450	4	1	8	1	0	0	0	0	0	1	0	0	14755	603	21	2	429	2	SLC45A2	5	33947450	Nonsense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	10429579	33947450	146967810	201	7664											
UGT3A1	133688	broad.mit.edu	37	chr5	35955676	35955676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctattattgtgaaaaataCatacacagtatcccttgtgt	6	7	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35955676	A	A	35955676	1	1	8	0	1	0	0	0	0	0	0	0	17089	493	17	3		3	UGT3A1	5	35955676	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2008226	35955676	144959584	202	7665											
OSMR	9180	broad.mit.edu	37	chr5	38919157	38919157	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagtcatctctgcagacccCgaaaacagtgagtttgtttt	8	9	2	2	rs61734274	byFrequency	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38919157	T	T	38919157	2	4	8	1	0	0	0	0	0	0	0	1	11386	639	23	4		4	OSMR	5	38919157	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	2963481	38919157	141996103	203	7666											
C7	730	broad.mit.edu	37	chr5	40979921	40979921	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctccactgtcagggtagaAattacacccttactggtagg	9	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40979921	T	T	40979921	3	4	8	1	0	0	0	0	1	0	0	0	2400	14	1	5	2326	5	C7	5	40979921	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	2060764	40979921	139935339	204	7667											
NLN	57486	broad.mit.edu	37	chr5	65084484	65084484	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accagcctgggcaacatagtGaggccctgtctctacaaaaa	9	12	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65084484	A	A	65084484	1	1	8	0	1	0	0	0	0	0	0	0	10562	1305	45	4		4	NLN	5	65084484	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	24104563	65084484	115830776	205	7668											
NAIP	4671	broad.mit.edu	37	chr5	70308281	70308281	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctcctcttcttggtacctCattttacctcctctcagcct	4	17	4	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70308281	A	A	70308281	3	1	8	1	0	0	0	0	1	0	0	0	10241	826	29	3	3805	3	NAIP	5	70308281	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	5223797	70308281	110606979	206	7669											
VCAN	1462	broad.mit.edu	37	chr5	82786237	82786237	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcgggtctttaccgctgtGacgtcatgtacgggattgaa	13	8	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82786237	T	T	82786237	3	4	8	1	0	0	0	0	1	0	0	0	17265	1290	45	3	397	3	VCAN	5	82786237	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	12477956	82786237	98129023	207	7670											
VCAN	1462	broad.mit.edu	37	chr5	82833543	82833543	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaacatttggtgaagaggTagaaaaaagtacttctgtca	10	4	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82833543	A	A	82833543	3	1	8	1	0	0	0	0	1	0	0	0	17265	1638	57	5	4747	5	VCAN	5	82833543	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	47306	82833543	98081717	208	7671											
RASA1	5921	broad.mit.edu	37	chr5	86628288	86628288	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttttaaaattggctgtaaaGatttttttatactgtatttt	5	2	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86628288	T	T	86628288	1	4	8	0	1	0	0	0	0	0	0	0	13168	957	33	3		3	RASA1	5	86628288	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3794745	86628288	94286972	209	7672											
PJA2	9867	broad.mit.edu	37	chr5	108704449	108704449	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccatcactgcattcagaacTgcaaatcagaagagaaataa	6	10	3	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108704449	A	A	108704449	5	1	8	1	0	0	0	0	0	0	1	0	12057	1594	55	5	868	5	PJA2	5	108704449	Splice_Site	SNP	T	TCGA-05-4395-01A-01D-1265-08	22076161	108704449	72210811	210	7673											
AQPEP	206338	broad.mit.edu	37	chr5	115361596	115361596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatttacaaactcatgttGctacttagcatttagacatt	4	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115361596	T	T	115361596	1	4	8	0	1	0	0	0	0	0	0	0	836	1334	46	3		3	AQPEP	5	115361596	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6657147	115361596	65553664	211	7674											
FBXL21	26223	broad.mit.edu	37	chr5	135272539	135272539	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgacctttggagaaagtttGaatttgaactgaaccagtca	9	7	1	5			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135272539	A	A	135272539	3	1	8	1	0	0	0	0	1	0	0	0	5775	1291	45	4	258	4	FBXL21	5	135272539	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	19910943	135272539	45642721	212	7675											
BRD8	10902	broad.mit.edu	37	chr5	137475737	137475738	+	3'UTR	INS	-	A	A													gggagagattcaaactctagINSaaaaagtcaggatagcagct							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137475738	A	A	137475737	6	5	8	0	1	1	1	0	0	0	0	0	1515	957	33	0		0	BRD8	5	137475737	3'UTR	INS	-	TCGA-05-4395-01A-01D-1265-08	2203198	137475737	43439523	213	7676											
PPARGC1B	133522	broad.mit.edu	37	chr5	149216087	149216087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccttctcctgttcctttgGagaccatgactactgccagg	8	14	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149216087	T	T	149216087	3	4	8	1	0	0	0	0	1	0	0	0	12397	1174	41	3	2106	3	PPARGC1B	5	149216087	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	11740350	149216087	31699173	214	7677											
PDE6A	5145	broad.mit.edu	37	chr5	149312169	149312169	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaacttttctgggaccctCattcgctgactaatgccttc	6	12	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149312169	T	T	149312169	1	4	8	0	1	0	0	0	0	0	0	0	11739	841	29	4		4	PDE6A	5	149312169	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	96082	149312169	31603091	215	7678											
GLRA1	2741	broad.mit.edu	37	chr5	151266343	151266343	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcagctcacgttcactGggggacctgccaatcaagag	12	11	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151266343	A	A	151266343	3	1	8	1	0	0	0	0	1	0	0	0	6518	1348	47	4	1210	4	GLRA1	5	151266343	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1954174	151266343	29648917	216	7679											
NMUR2	56923	broad.mit.edu	37	chr5	151784223	151784223	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagtttggcgcggaacGggtgtaggatggccacgtag	17	8	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151784223	C	C	151784223	3	2	8	1	0	0	0	0	1	0	0	0	10602	1116	39	4	811	4	NMUR2	5	151784223	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	517880	151784223	29131037	217	7680											
EBF1	1879	broad.mit.edu	37	chr5	158266893	158266893	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctaatctaaacaactgctaGattgcagatacctgggggac	9	9	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158266893	T	T	158266893	1	4	8	0	1	0	0	0	0	0	0	0	4920	957	33	3		3	EBF1	5	158266893	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6482670	158266893	22648367	218	7681											
ATP10B	23120	broad.mit.edu	37	chr5	160039758	160039758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacctcacctgattctctGtattgatggtataaacagtg	7	9	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160039758	T	T	160039758	3	4	8	1	0	0	0	0	1	0	0	0	1121	1377	48	3	1593	3	ATP10B	5	160039758	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1772865	160039758	20875502	219	7682											
GABRG2	2566	broad.mit.edu	37	chr5	161580589	161580589	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttgctgtgtttcaaacCtgcaaggcaaagtaaaatta	8	6	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161580589	A	A	161580589	1	1	8	0	1	0	0	0	0	0	0	0	6232	696	24	2		2	GABRG2	5	161580589	3'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	1540831	161580589	19334671	220	7683											
KCNIP1	30820	broad.mit.edu	37	chr5	170159686	170159686	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctatcacctgctaaagaagGacctcaccttttaatcactt	4	13	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170159686	A	A	170159686	1	1	8	0	1	0	0	0	0	0	0	0	8109	1189	41	4		4	KCNIP1	5	170159686	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	8579097	170159686	10755574	221	7684											
UBTD2	92181	broad.mit.edu	37	chr5	171682218	171682218	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggggtgcaaattcccagcaGaaggaggtgaactccgcttg	14	9	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171682218	C	C	171682218	1	2	8	0	1	0	0	0	0	0	0	0	17034	957	33	4		4	UBTD2	5	171682218	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1522532	171682218	9233042	222	7685											
HK3	3101	broad.mit.edu	37	chr5	176315903	176315903	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctggaggaagccttttctAagccctcagtccacctggcc	11	14	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176315903	C	C	176315903	1	2	8	0	1	0	0	0	0	0	0	0	7259	377	13	5		5	HK3	5	176315903	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	4633685	176315903	4599357	223	7686											
DBN1	1627	broad.mit.edu	37	chr5	176885526	176885526	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcgtcagctgtggcaggctCcacgggagcagccaggacag	17	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176885526	A	A	176885526	4	1	8	1	0	0	0	0	0	1	0	0	4285	864	30	3	652	3	DBN1	5	176885526	Nonsense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	569623	176885526	4029734	224	7687											
DBN1	1627	broad.mit.edu	37	chr5	176894024	176894024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgagcctctcatccagggCcttcttccgctcctcctcct	6	20	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176894024	T	T	176894024	3	4	8	1	0	0	0	0	1	0	0	0	4285	739	26	4	1386	4	DBN1	5	176894024	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	8498	176894024	4021236	225	7688											
PROP1	5626	broad.mit.edu	37	chr5	177421277	177421277	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctctgtcctccttgcgGggagaaccttgatctccccc	9	18	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177421277	A	A	177421277	3	1	8	1	0	0	0	0	1	0	0	0	12663	1232	43	4	516	4	PROP1	5	177421277	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	527253	177421277	3493983	226	7689											
ADAMTS2	9509	broad.mit.edu	37	chr5	178555091	178555091	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatgtatttgtacgtcagtGagacccgggtgtctcccacc	10	12	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178555091	A	A	178555091	3	1	8	1	0	0	0	0	1	0	0	0	265	1294	45	4	1173	4	ADAMTS2	5	178555091	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1133814	178555091	2360169	227	7690											
RNF130	55819	broad.mit.edu	37	chr5	179467544	179467544	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagcggcccgtgatattttCtctttaaacgtgcagtttcc	8	10	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179467544	G	G	179467544	3	3	8	1	0	0	0	0	1	0	0	0	13549	912	32	4	940	4	RNF130	5	179467544	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	912453	179467544	1447716	228	7691											
CNOT6	57472	broad.mit.edu	37	chr5	179991787	179991787	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgttatttttgctcagtctCtataagcctaacagtattgt	6	8	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179991787	G	G	179991787	1	3	8	0	1	0	0	0	0	0	0	0	3654	928	32	4		4	CNOT6	5	179991787	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	524243	179991787	923473	229	7692											
TRIM7	81786	broad.mit.edu	37	chr5	180625764	180625764	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agactttattcttcatctcaGaagagactgtggttggcttg	10	7	3	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180625764	C	C	180625764	3	2	8	1	0	0	0	0	1	0	0	0	16668	942	33	4	633	4	TRIM7	5	180625764	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	633977	180625764	289496	230	7693											
SLC17A2	10246	broad.mit.edu	37	chr6	25915958	25915958	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaatgggcccacacgcttatCcttaccaagagatgaaaaga	8	10	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25915958	T	T	25915958	1	4	8	0	1	0	0	0	0	0	0	0	14530	870	30	4		4	SLC17A2	6	25915958	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08		25915958	145199109	231	7694											
SCAND3	114821	broad.mit.edu	37	chr6	28540528	28540528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgcttatgatcagcttcCatattatcacataataaaga	5	7	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28540528	A	A	28540528	3	1	8	1	0	0	0	0	1	0	0	0	13988	594	21	2	843	2	SCAND3	6	28540528	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2624570	28540528	142574539	232	7695											
OR12D2	26529	broad.mit.edu	37	chr6	29364792	29364792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttcttccactccctgGgcagcacggagtccatgttg	9	13	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29364792	T	T	29364792	3	4	8	1	0	0	0	0	1	0	0	0	11025	1232	43	2	318	2	OR12D2	6	29364792	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	824264	29364792	141750275	233	7696											
DEFB112	245915	broad.mit.edu	37	chr6	50016193	50016193	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagaatatttacttcatttCagtcaaaaagtattgattaa	4	5	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50016193	T	T	50016193	1	4	8	0	1	0	0	0	0	0	0	0	4440	841	29	4		4	DEFB112	6	50016193	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	20651401	50016193	121098874	234	7697											
GSTA5	221357	broad.mit.edu	37	chr6	52713848	52713848	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccattgctctttaagaCgtcgagaattggaggaatca	10	7	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52713848	A	A	52713848	1	1	8	0	1	0	0	0	0	0	0	0	6900	551	19	3		3	GSTA5	6	52713848	5'Flank	SNP	C	TCGA-05-4395-01A-01D-1265-08	2697655	52713848	118401219	235	7698											
DST	667	broad.mit.edu	37	chr6	56471080	56471080	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcatagaatctaaatgatcAgtatcggagtgaaattcctg	9	6	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56471080	G	G	56471080	1	3	8	0	1	0	0	0	0	0	0	0	4823	203	7	5		5	DST	6	56471080	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	3757232	56471080	114643987	236	7699											
PRIM2	5558	broad.mit.edu	37	chr6	57467240	57467240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatatgttggccaagtaCagaaatccaagagctctgtt	10	8	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57467240	A	A	57467240	1	1	8	0	1	0	0	0	0	0	0	0	12597	493	17	3		3	PRIM2	6	57467240	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	996160	57467240	113647827	237	7700											
SIM1	6492	broad.mit.edu	37	chr6	100838959	100838959	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacactatcttcatcccaatGacctcgccctaaaaattaga	3	14	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100838959	T	T	100838959	3	4	8	1	0	0	0	0	1	0	0	0	14436	1290	45	3	725	3	SIM1	6	100838959	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	43371719	100838959	70276108	238	7701											
ASCC3	10973	broad.mit.edu	37	chr6	101109602	101109603	+	Intron	INS	-	A	A													cctaaacactacaaaacagcINSaaccaactcaatcttcatct							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101109603	A	A	101109602	6	5	8	0	1	1	1	0	0	0	0	0	1037	725	25	0		0	ASCC3	6	101109602	Intron	INS	-	TCGA-05-4395-01A-01D-1265-08	270643	101109602	70005465	239	7702											
C6orf174	387104	broad.mit.edu	37	chr6	127768137	127768137	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacagttctgttaaattcatCagtctttgctgccagcttct	6	10	5	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127768137	T	T	127768137	1	4	8	0	1	0	0	0	0	0	0	0	2368	826	29	4		4	C6orf174	6	127768137	3'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	26658535	127768137	43346930	240	7703											
TIAM2	26230	broad.mit.edu	37	chr6	155465668	155465668	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtttttaaaaaagtgtgtCacttaccctcccagtccttt	6	10	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155465668	G	G	155465668	1	3	8	0	1	0	0	0	0	0	0	0	16014	841	29	4		4	TIAM2	6	155465668	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	27697531	155465668	15649399	241	7704											
TIAM2	26230	broad.mit.edu	37	chr6	155465909	155465909	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttggagatgtctaccttttCcaggtactgctggtactttg	10	8	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155465909	T	T	155465909	2	4	8	1	0	0	0	0	0	0	0	1	16014	854	30	4		4	TIAM2	6	155465909	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	241	155465909	15649158	242	7705											
TULP4	56995	broad.mit.edu	37	chr6	158919876	158919876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatcaacgtgtttgtcacGgtccctctgtcagtagatca	8	11	5	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158919876	T	T	158919876	1	4	8	0	1	0	0	0	0	0	0	0	16902	1131	39	1		1	TULP4	6	158919876	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3453967	158919876	12195191	243	7706											
LPA	4018	broad.mit.edu	37	chr6	160953584	160953584	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcaactgtcagtgcctctGgccaaatgctcagcacaaat	9	12	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160953584	A	A	160953584	2	1	8	1	0	0	0	0	0	0	0	1	8990	1335	47	4		4	LPA	6	160953584	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	2033708	160953584	10161483	244	7707											
LPA	4018	broad.mit.edu	37	chr6	161011910	161011910	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaaggcttctgtatcacTaagattttgcaactcttttt	7	7	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161011910	A	A	161011910	1	1	8	0	1	0	0	0	0	0	0	0	8990	1537	53	5		5	LPA	6	161011910	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	58326	161011910	10103157	245	7708											
PDE10A	10846	broad.mit.edu	37	chr6	165808736	165808736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacatgttttcaaaaggaCcaatgtcaaagtggaatctg	9	8	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165808736	A	A	165808736	3	1	8	1	0	0	0	0	1	0	0	0	11724	507	18	3	962	3	PDE10A	6	165808736	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4796826	165808736	5306331	246	7709											
RPS6KA2	6196	broad.mit.edu	37	chr6	166952376	166952376	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacgagctgggtctgttacaGattttagcgctggagtttga	13	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166952376	C	C	166952376	1	2	8	0	1	0	0	0	0	0	0	0	13762	957	33	4		4	RPS6KA2	6	166952376	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1143640	166952376	4162691	247	7710											
SMOC2	64094	broad.mit.edu	37	chr6	169067092	169067092	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgtctcttttttgttttttCcttttcagccaaggaaacaa	5	8	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169067092	G	G	169067092	1	3	8	0	1	0	0	0	0	0	0	0	14916	870	30	4		4	SMOC2	6	169067092	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2114716	169067092	2047975	248	7711											
SNX8	29886	broad.mit.edu	37	chr7	2297597	2297597	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagggggcccccttccccAccagcccacccattaccagg	9	20	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2297597	C	C	2297597	1	2	8	0	1	0	0	0	0	0	0	0	15022	174	6	5		5	SNX8	7	2297597	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08		2297597	156841066	249	7712											
CARD11	84433	broad.mit.edu	37	chr7	2963094	2963094	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctgtggtcatcaggcGcctgggtgtcctggctccga	14	14	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2963094	A	A	2963094	1	1	8	0	1	0	0	0	0	0	0	0	2671	1102	38	4		4	CARD11	7	2963094	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	665497	2963094	156175569	250	7713											
CARD11	84433	broad.mit.edu	37	chr7	2978556	2978556	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacagaagaaccagcaacaGatacggacagagcagaaggt	13	8	0	5			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2978556	C	C	2978556	1	2	8	0	1	0	0	0	0	0	0	0	2671	957	33	4		4	CARD11	7	2978556	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	15462	2978556	156160107	251	7714											
SDK1	221935	broad.mit.edu	37	chr7	4153810	4153810	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattcaccatcgaggagctgGaggagtggatggaatacgag	15	6	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4153810	A	A	4153810	3	1	8	1	0	0	0	0	1	0	0	0	14081	1175	41	4	3825	4	SDK1	7	4153810	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1175254	4153810	154984853	252	7715											
SCIN	85477	broad.mit.edu	37	chr7	12680151	12680151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaattgtggaggtaatgtcAtgcattccataaaacatgcc	9	7	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12680151	G	G	12680151	1	3	8	0	1	0	0	0	0	0	0	0	14018	232	8	5		5	SCIN	7	12680151	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	8526341	12680151	146458512	253	7716											
CREB5	9586	broad.mit.edu	37	chr7	28844166	28844166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttccgtgatctctttccCcttcttattctccttcttaa	2	14	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28844166	A	A	28844166	1	1	8	0	1	0	0	0	0	0	0	0	3892	638	22	2		2	CREB5	7	28844166	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	16164015	28844166	130294497	254	7717											
CPVL	54504	broad.mit.edu	37	chr7	29070207	29070207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctacctgatggaagtcacCcgcttgccggatgtaaccag	10	13	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29070207	A	A	29070207	3	1	8	1	0	0	0	0	1	0	0	0	3867	623	22	2	132	2	CPVL	7	29070207	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	226041	29070207	130068456	255	7718											
BBS9	27241	broad.mit.edu	37	chr7	33397600	33397600	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagtcagtcttcttagtctCttcccaggtaagactgttga	8	11	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33397600	A	A	33397600	2	1	8	1	0	0	0	0	0	0	0	1	1347	900	32	3		3	BBS9	7	33397600	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	4327393	33397600	125741063	256	7719											
ELMO1	9844	broad.mit.edu	37	chr7	37415212	37415212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaaggatgtcccccatGcctaagcaccaggagctggc	11	14	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37415212	T	T	37415212	1	4	8	0	1	0	0	0	0	0	0	0	5107	1334	46	3		3	ELMO1	7	37415212	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4017612	37415212	121723451	257	7720											
PKD1L1	168507	broad.mit.edu	37	chr7	47853457	47853457	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaaatgatctgccagggtCctgccccaatgttgcctaga	9	12	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47853457	T	T	47853457	1	4	8	0	1	0	0	0	0	0	0	0	12059	870	30	4		4	PKD1L1	7	47853457	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	10438245	47853457	111285206	258	7721											
PKD1L1	168507	broad.mit.edu	37	chr7	47866869	47866869	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagaacaatctcccaggaGgaccagcggcagtggggtac	15	10	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47866869	A	A	47866869	1	1	8	0	1	0	0	0	0	0	0	0	12059	1015	35	4		4	PKD1L1	7	47866869	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	13412	47866869	111271794	259	7722											
ABCA13	154664	broad.mit.edu	37	chr7	48266982	48266982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgatcatgtggaagatGgcatggatgttgcagtgaac	14	6	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48266982	T	T	48266982	3	4	8	1	0	0	0	0	1	0	0	0	31	1348	47	2	443	2	ABCA13	7	48266982	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	400113	48266982	110871681	260	7723											
ZNF735	730291	broad.mit.edu	37	chr7	63667629	63667629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgagaaatggtgagtgctGggtctgtcatcgtgagagag	17	6	2	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63667629	T	T	63667629	1	4	8	0	1	0	0	0	0	0	0	0	18253	1363	47	2		2	ZNF735	7	63667629	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	15400647	63667629	95471034	261	7724											
ZNF138	7697	broad.mit.edu	37	chr7	64275283	64275284	+	Intron	DEL	GC	-	-													gtgtgtgtgtgtttgtgtgtGcgtgtttttcagggaccact					rs7809431	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64275284	-	-	64275283	6	5	8	0	1	1	0	1	0	0	0	0	17853	1334	46	0		0	ZNF138	7	64275283	Intron	DEL	GC	TCGA-05-4395-01A-01D-1265-08	607654	64275283	94863380	262	7725											
HIP1	3092	broad.mit.edu	37	chr7	75221203	75221203	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaccccaggcaagactaTggatatcatggtactctttg	10	9	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75221203	C	C	75221203	1	2	8	0	1	0	0	0	0	0	0	0	7181	1479	51	5		5	HIP1	7	75221203	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	10945920	75221203	83917460	263	7726											
SEMA3D	223117	broad.mit.edu	37	chr7	84658570	84658570	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgccaagggcatcctcaAtgtctactctcactgatgac	7	12	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84658570	G	G	84658570	1	3	8	0	1	0	0	0	0	0	0	0	14140	116	4	5		5	SEMA3D	7	84658570	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	9437367	84658570	74480093	264	7727											
AKAP9	10142	broad.mit.edu	37	chr7	91632583	91632583	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatatatggtaaagcacaAtgaaaaaaatgtacatttca	5	5	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91632583	G	G	91632583	1	3	8	0	1	0	0	0	0	0	0	0	459	116	4	5		5	AKAP9	7	91632583	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	6974013	91632583	67506080	265	7728											
ZNF655	79027	broad.mit.edu	37	chr7	99161786	99161786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatttcaaatgttagggtcCaaggaagccctctgttgcaa	9	8	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99161786	A	A	99161786	1	1	8	0	1	0	0	0	0	0	0	0	18195	609	21	2		2	ZNF655	7	99161786	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	7529203	99161786	59976877	266	7729											
ACHE	43	broad.mit.edu	37	chr7	100490353	100490353	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccaggaactcggcccggctGatgagagactcgttgtcttt	13	11	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100490353	A	A	100490353	2	1	8	1	0	0	0	0	0	0	0	1	141	1280	45	4		4	ACHE	7	100490353	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	1328567	100490353	58648310	267	7730											
MUC17	140453	broad.mit.edu	37	chr7	100695337	100695337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcattgcctggagaccaaGgtcatgggactaggtcccag	14	10	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100695337	T	T	100695337	1	4	8	0	1	0	0	0	0	0	0	0	10068	1015	35	2		2	MUC17	7	100695337	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	204984	100695337	58443326	268	7731											
CLDN15	24146	broad.mit.edu	37	chr7	100877770	100877770	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccatctcccctctgcgaCggagccagcccaacagcccc	7	21	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100877770	T	T	100877770	1	4	8	0	1	0	0	0	0	0	0	0	3507	551	19	4		4	CLDN15	7	100877770	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	182433	100877770	58260893	269	7732											
DNAJC2	27000	broad.mit.edu	37	chr7	102968127	102968127	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttatgcaagtgaagtagtCattatctccttcttttattg	7	6	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102968127	G	G	102968127	3	3	8	1	0	0	0	0	1	0	0	0	4679	826	29	4	1515	4	DNAJC2	7	102968127	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2090357	102968127	56170536	270	7733											
SLC26A5	375611	broad.mit.edu	37	chr7	103006517	103006517	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattaataaatcatttttctCattagggggctcgaatggtt	8	5	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103006517	T	T	103006517	1	4	8	0	1	0	0	0	0	0	0	0	14634	841	29	4		4	SLC26A5	7	103006517	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	38390	103006517	56132146	271	7734											
WNT2	7472	broad.mit.edu	37	chr7	116937675	116937675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaacttacctgcctctcGgtccctgatacagtagtctg	8	12	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116937675	T	T	116937675	2	4	8	1	0	0	0	0	0	0	0	1	17513	1124	39	1		1	WNT2	7	116937675	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	13931158	116937675	42200988	272	7735											
FEZF1	389549	broad.mit.edu	37	chr7	121943805	121943805	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgggcgctttctttcatGtaatgctgcagctgagcctg	12	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121943805	T	T	121943805	4	4	8	1	0	0	0	0	0	1	0	0	5882	1372	48	3	756	3	FEZF1	7	121943805	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	5006130	121943805	37194858	273	7736											
FLNC	2318	broad.mit.edu	37	chr7	128475757	128475757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccaggatcccctgcagGgtttgtcctcctccagctgt	13	14	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128475757	A	A	128475757	1	1	8	0	1	0	0	0	0	0	0	0	5993	1247	43	4		4	FLNC	7	128475757	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6531952	128475757	30662906	274	7737											
FAM40B	57464	broad.mit.edu	37	chr7	129100269	129100269	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaacctgtcttcagtgTtgtcacagagcatgtgtgca	10	8	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129100269	G	G	129100269	1	3	8	0	1	0	0	0	0	0	0	0	5612	1740	60	5		5	FAM40B	7	129100269	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	624512	129100269	30038394	275	7738											
EXOC4	60412	broad.mit.edu	37	chr7	133749316	133749316	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttggtgacgggggtcccctCagtcacactcacttttttcc	10	13	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133749316	T	T	133749316	1	4	8	0	1	0	0	0	0	0	0	0	5348	841	29	4		4	EXOC4	7	133749316	3'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	4649047	133749316	25389347	276	7739											
AKR1B15	441282	broad.mit.edu	37	chr7	134253052	134253052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagaaggctgtgatgcGggaggacctgttcatcgtca	14	9	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134253052	T	T	134253052	3	4	8	1	0	0	0	0	1	0	0	0	468	1116	39	1	299	1	AKR1B15	7	134253052	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	503736	134253052	24885611	277	7740											
TPK1	27010	broad.mit.edu	37	chr7	144288333	144288333	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgaaaactttcaggattCtccttcacatttttgctggt	6	8	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144288333	T	T	144288333	1	4	8	0	1	0	0	0	0	0	0	0	16528	928	32	4		4	TPK1	7	144288333	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	10035281	144288333	14850330	278	7741											
CNTNAP2	26047	broad.mit.edu	37	chr7	146536794	146536794	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccatcttacctctgccCatcttcaggtgctgggggat	9	13	4	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146536794	A	A	146536794	1	1	8	0	1	0	0	0	0	0	0	0	3679	609	21	2		2	CNTNAP2	7	146536794	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2248461	146536794	12601869	279	7742											
CUL1	8454	broad.mit.edu	37	chr7	148497615	148497615	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgcattgacattctaattGagaaagaatatttggagcga	9	4	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148497615	C	C	148497615	3	2	8	1	0	0	0	0	1	0	0	0	4087	1291	45	4	2354	4	CUL1	7	148497615	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1960821	148497615	10641048	280	7743											
ZNF746	155061	broad.mit.edu	37	chr7	149191267	149191267	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgggtttggccgcttgggctCccacaccccaaggcgtccca	12	17	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149191267	G	G	149191267	1	3	8	0	1	0	0	0	0	0	0	0	18258	870	30	4		4	ZNF746	7	149191267	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	693652	149191267	9947396	281	7744											
NOS3	4846	broad.mit.edu	37	chr7	150703845	150703845	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accccagggatgctggccctCagcccctcccaagggcaggg	13	17	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150703845	T	T	150703845	1	4	8	0	1	0	0	0	0	0	0	0	10639	841	29	4		4	NOS3	7	150703845	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1512578	150703845	8434818	282	7745											
CSMD1	64478	broad.mit.edu	37	chr8	3063038	3063038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccttaccgaattcctttgGtaccgtgatggaatagaggc	10	9	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3063038	T	T	3063038	3	4	8	1	0	0	0	0	1	0	0	0	3978	1261	44	3	5882	3	CSMD1	8	3063038	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08		3063038	143300984	283	7746											
DLC1	10395	broad.mit.edu	37	chr8	12957250	12957250	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggagctggaagaattgcGtctcttcagttccttggggc	13	9	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12957250	A	A	12957250	3	1	8	1	0	0	0	0	1	0	0	0	4590	1145	40	4	2030	4	DLC1	8	12957250	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	9894212	12957250	133406772	284	7747											
SH2D4A	63898	broad.mit.edu	37	chr8	19192164	19192164	+	Intron	DEL	T	-	-													gctcttcctgttgaagaatgTtttttgagaatttcactttt							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19192164	-	-	19192164	6	5	8	0	1	1	0	1	0	0	0	0	14348	1740	60	0		0	SH2D4A	8	19192164	Intron	DEL	T	TCGA-05-4395-01A-01D-1265-08	6234914	19192164	127171858	285	7748											
XPO7	23039	broad.mit.edu	37	chr8	21856831	21856831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttggtaagccttacgctGcattgccacaatcttgttcc	7	13	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21856831	T	T	21856831	1	4	8	0	1	0	0	0	0	0	0	0	17576	1334	46	3		3	XPO7	8	21856831	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2664667	21856831	124507191	286	7749											
DOCK5	80005	broad.mit.edu	37	chr8	25182907	25182907	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaaaatggaagatgctAaattctacctgaccctgcct	6	10	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25182907	G	G	25182907	3	3	8	1	0	0	0	0	1	0	0	0	4730	363	13	5	1817	5	DOCK5	8	25182907	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	3326076	25182907	121181115	287	7750											
C8orf80	389643	broad.mit.edu	37	chr8	27880986	27880986	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcactcccgacatctacagGagagcagaaagctcacatca	7	13	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27880986	C	C	27880986	1	2	8	0	1	0	0	0	0	0	0	0	2465	1189	41	4		4	C8orf80	8	27880986	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2698079	27880986	118483036	288	7751											
TEX15	56154	broad.mit.edu	37	chr8	30705190	30705190	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgatcctgacccctatcTtcaacataagcagtttcttt	5	11	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30705190	A	A	30705190	3	1	8	1	0	0	0	0	1	0	0	0	15901	1606	56	5	7041	5	TEX15	8	30705190	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	2824204	30705190	115658832	289	7752											
NRG1	3084	broad.mit.edu	37	chr8	32472118	32472118	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggcaaattttactaaccaGaatgacaaccataactgctg	6	10	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32472118	C	C	32472118	1	2	8	0	1	0	0	0	0	0	0	0	10742	957	33	4		4	NRG1	8	32472118	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1766928	32472118	113891904	290	7753											
HTRA4	203100	broad.mit.edu	37	chr8	38831817	38831817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgcggaccgcggggctggGacgatgcctcctgccggggc	19	14	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38831817	T	T	38831817	3	4	8	1	0	0	0	0	1	0	0	0	7526	1174	41	3	37	3	HTRA4	8	38831817	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	6359699	38831817	107532205	291	7754											
PRKDC	5591	broad.mit.edu	37	chr8	48701460	48701460	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatagcaggctgtgccagTccatacctgaataaacttcc	7	11	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48701460	C	C	48701460	1	2	8	0	1	0	0	0	0	0	0	0	12627	1682	58	5		5	PRKDC	8	48701460	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	9869643	48701460	97662562	292	7755											
SNTG1	54212	broad.mit.edu	37	chr8	51449322	51449322	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcagactgatccctctaCttcattcgcgcttctctcag	5	16	5	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51449322	T	T	51449322	3	4	8	1	0	0	0	0	1	0	0	0	14988	565	20	4	668	4	SNTG1	8	51449322	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2747862	51449322	94914700	293	7756											
TRPA1	8989	broad.mit.edu	37	chr8	72967855	72967855	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttggaaaaaattaggtttCatattttcaaggcaaatatt	6	4	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72967855	T	T	72967855	1	4	8	0	1	0	0	0	0	0	0	0	16702	841	29	4		4	TRPA1	8	72967855	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	21518533	72967855	73396167	294	7757											
LY96	23643	broad.mit.edu	37	chr8	74903787	74903787	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtatttcatacacctactGtggtaagtaaaaccgcaaaa	6	8	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74903787	T	T	74903787	3	4	8	1	0	0	0	0	1	0	0	0	9190	1377	48	3	112	3	LY96	8	74903787	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1935932	74903787	71460235	295	7758											
HNF4G	3174	broad.mit.edu	37	chr8	76463821	76463821	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctaagttttttcaaaggTgctcattactaaaataagtt	5	5	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76463821	C	C	76463821	1	2	8	0	1	0	0	0	0	0	0	0	7321	1711	59	5		5	HNF4G	8	76463821	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	1560034	76463821	69900201	296	7759											
ZBTB10	65986	broad.mit.edu	37	chr8	81426180	81426180	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactctcggggccagatggtGataggaatgtgaatgcaaat	13	6	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81426180	C	C	81426180	3	2	8	1	0	0	0	0	1	0	0	0	17649	1290	45	4	1907	4	ZBTB10	8	81426180	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	4962359	81426180	64937842	297	7760											
CNGB3	54714	broad.mit.edu	37	chr8	87683357	87683357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatggcaatagagatGggcccatgaagaaatagata	10	4	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87683357	T	T	87683357	1	4	8	0	1	0	0	0	0	0	0	0	3633	1363	47	2		2	CNGB3	8	87683357	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6257177	87683357	58680665	298	7761											
RUNX1T1	862	broad.mit.edu	37	chr8	92983040	92983040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacggccttctgcagctccGtcatcgcctggcgcttcacc	9	18	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92983040	T	T	92983040	3	4	8	1	0	0	0	0	1	0	0	0	13858	1145	40	3	437	3	RUNX1T1	8	92983040	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	5299683	92983040	53380982	299	7762											
RAD54B	25788	broad.mit.edu	37	chr8	95411503	95411503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagattcagaatcctacCaagagttaattaacacaggt	7	7	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95411503	A	A	95411503	1	1	8	0	1	0	0	0	0	0	0	0	13100	609	21	2		2	RAD54B	8	95411503	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2428463	95411503	50952519	300	7763											
VPS13B	157680	broad.mit.edu	37	chr8	100587852	100587852	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaattgtctttgaaaataatGaaatggctaataatctttta	5	3	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100587852	A	A	100587852	1	1	8	0	1	0	0	0	0	0	0	0	17317	1305	45	4		4	VPS13B	8	100587852	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	5176349	100587852	45776170	301	7764											
KIAA0196	9897	broad.mit.edu	37	chr8	126091004	126091004	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtaaatatcatcagatctCagtcgaccaatgaccatact	5	10	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126091004	G	G	126091004	2	3	8	1	0	0	0	0	0	0	0	1	8231	813	29	4		4	KIAA0196	8	126091004	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	25503152	126091004	20273018	302	7765											
COL22A1	169044	broad.mit.edu	37	chr8	139614416	139614416	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaccccctgcaaggagaaaGaaaggacagtcattgccccg	12	12	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139614416	C	C	139614416	1	2	8	0	1	0	0	0	0	0	0	0	3713	957	33	4		4	COL22A1	8	139614416	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	13523412	139614416	6749606	303	7766											
JRK	8629	broad.mit.edu	37	chr8	143747207	143747207	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccactcgtacaggacgcGgtccaggtgctccagcttgg	13	13	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143747207	A	A	143747207	3	1	8	1	0	0	0	0	1	0	0	0	8034	1116	39	4	1535	4	JRK	8	143747207	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	4132791	143747207	2616815	304	7767											
PYCRL	65263	broad.mit.edu	37	chr8	144689070	144689070	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctgcctgccgcccaagcCtggccagcagagcctatact	12	16	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144689070	T	T	144689070	1	4	8	0	1	0	0	0	0	0	0	0	12965	696	24	4		4	PYCRL	8	144689070	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	941863	144689070	1674952	305	7768											
ZNF623	9831	broad.mit.edu	37	chr8	144733027	144733027	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgagtgtgggaaagcctttAttcggagttcaaagctcatt	11	6	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144733027	T	T	144733027	3	4	8	1	0	0	0	0	1	0	0	0	18174	449	16	5	987	5	ZNF623	8	144733027	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	43957	144733027	1630995	306	7769											
DMRT3	58524	broad.mit.edu	37	chr9	990765	990765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatgtcaccctgtggaaCaccatgacgctgcagcagca	10	12	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	990765	A	A	990765	3	1	8	1	0	0	0	0	1	0	0	0	4627	477	17	3	1185	3	DMRT3	9	990765	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08		990765	140222666	307	7770											
ZCCHC7	84186	broad.mit.edu	37	chr9	37305697	37305697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccgatgtcatatgctaGgccactatacagatgtgagt	11	8	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37305697	T	T	37305697	3	4	8	1	0	0	0	0	1	0	0	0	17719	1000	35	2	951	2	ZCCHC7	9	37305697	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	36314932	37305697	103907734	308	7771											
ROR2	4920	broad.mit.edu	37	chr9	94484653	94484653	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaccatcttcacaccatcTgcaattaactaacctgcatt	3	13	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94484653	A	A	94484653	1	1	8	0	1	0	0	0	0	0	0	0	13638	1595	55	5		5	ROR2	9	94484653	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	57178956	94484653	46728778	309	7772											
PHF2	5253	broad.mit.edu	37	chr9	96392140	96392140	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgcacagctgtgctccatCtggcccaggttcccagacaa	9	16	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96392140	G	G	96392140	1	3	8	0	1	0	0	0	0	0	0	0	11925	928	32	4		4	PHF2	9	96392140	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1907487	96392140	44821291	310	7773											
GABBR2	9568	broad.mit.edu	37	chr9	101258801	101258801	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaggtcattccgcacctgtCagcaaagagaaagcagaggg	12	10	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101258801	G	G	101258801	1	3	8	0	1	0	0	0	0	0	0	0	6216	841	29	4		4	GABBR2	9	101258801	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	4866661	101258801	39954630	311	7774											
C9orf30	91283	broad.mit.edu	37	chr9	103213223	103213223	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcctgtttcctcatttaAccggccctttcccaattcgc	6	15	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103213223	G	G	103213223	3	3	8	1	0	0	0	0	1	0	0	0	2504	43	2	5	809	5	C9orf30	9	103213223	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	1954422	103213223	38000208	312	7775											
ABCA1	19	broad.mit.edu	37	chr9	107550287	107550287	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actatagttaccagcatattTttctccatacttcacgaggc	5	11	2	0	rs150283412		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107550287	G	G	107550287	3	3	8	1	0	0	0	0	1	0	0	0	28	1850	64	5	687	5	ABCA1	9	107550287	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	4337064	107550287	33663144	313	7776											
SVEP1	79987	broad.mit.edu	37	chr9	113194786	113194786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagctcccattatctgtaCagaacatccttgagtcaccc	5	15	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113194786	A	A	113194786	3	1	8	1	0	0	0	0	1	0	0	0	15538	478	17	3	5598	3	SVEP1	9	113194786	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	5644499	113194786	28018645	314	7777											
KIAA0368	23392	broad.mit.edu	37	chr9	114155912	114155912	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatccaggtttttgaacattTaaaatacaagttcaattaag	5	5	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114155912	A	A	114155912	1	1	8	0	1	0	0	0	0	0	0	0	8241	1769	61	5		5	KIAA0368	9	114155912	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	961126	114155912	27057519	315	7778											
PPP6C	5537	broad.mit.edu	37	chr9	127920340	127920340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagatctagaaagatgcaCaccaaaaagttaacagtggt	8	8	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127920340	A	A	127920340	1	1	8	0	1	0	0	0	0	0	0	0	12508	493	17	3		3	PPP6C	9	127920340	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	13764428	127920340	13293091	316	7779											
STXBP1	6812	broad.mit.edu	37	chr9	130428493	130428493	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatcctggatcgaggctttGaccccagctcccctgtgctc	10	15	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130428493	C	C	130428493	3	2	8	1	0	0	0	0	1	0	0	0	15470	1290	45	4	746	4	STXBP1	9	130428493	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2508153	130428493	10784938	317	7780											
USP20	10868	broad.mit.edu	37	chr9	132623374	132623374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccctcatctggaggctGgaaaccgccagagtcttggt	15	11	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132623374	T	T	132623374	1	4	8	0	1	0	0	0	0	0	0	0	17178	1363	47	2		2	USP20	9	132623374	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2194881	132623374	8590057	318	7781											
AIF1L	83543	broad.mit.edu	37	chr9	133995667	133995667	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacgagagcagccccaagccAgttggcccccctccagagag	11	16	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133995667	T	T	133995667	2	4	8	1	0	0	0	0	0	0	0	1	425	175	7	5		5	AIF1L	9	133995667	Silent	SNP	A	TCGA-05-4395-01A-01D-1265-08	1372293	133995667	7217764	319	7782											
RPL7A	6130	broad.mit.edu	37	chr9	136216155	136216155	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacagtagcagtgtcgcagcGaggtactaggactgcaattc	12	9	0	0	rs147366255	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136216155	A	A	136216155	1	1	8	0	1	0	0	0	0	0	0	0	13711	1073	37	4		4	RPL7A	9	136216155	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2220488	136216155	4997276	320	7783											
ADAMTS13	11093	broad.mit.edu	37	chr9	136282577	136282577	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctttcaagcaaacaagttcGagacctccctcaacaggcca	6	14	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136282577	C	C	136282577	1	2	8	0	1	0	0	0	0	0	0	0	258	1073	37	4		4	ADAMTS13	9	136282577	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	66422	136282577	4930854	321	7784											
EHMT1	79813	broad.mit.edu	37	chr9	140611349	140611349	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactttgtgcagacttctgtCatcggcagcaacggatacat	10	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140611349	G	G	140611349	2	3	8	1	0	0	0	0	0	0	0	1	5023	813	29	4		4	EHMT1	9	140611349	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	4328772	140611349	602082	322	7785											
DIP2C	22982	broad.mit.edu	37	chr10	464974	464975	+	Intron	INS	-	A	A													cagcacaaaccgtttaccagINSaaaaaaacgcatctctcctt							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	464975	A	A	464974	6	5	8	0	1	1	1	0	0	0	0	0	4569	957	33	0		0	DIP2C	10	464974	Intron	INS	-	TCGA-05-4395-01A-01D-1265-08		464974	135069773	323	7786											
GDI2	2665	broad.mit.edu	37	chr10	5827422	5827422	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctcggctccccacaacttCcacctcccaggctcaagtga	6	18	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827422	A	A	5827422	1	1	8	0	1	0	0	0	0	0	0	0	6385	870	30	3		3	GDI2	10	5827422	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5362448	5827422	129707325	324	7787											
FBXO18	84893	broad.mit.edu	37	chr10	5955790	5955790	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagttaaagaggagccatCtgtctggccagggtatgtgt	13	6	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5955790	T	T	5955790	3	4	8	1	0	0	0	0	1	0	0	0	5788	913	32	4	1480	4	FBXO18	10	5955790	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	128368	5955790	129578957	325	7788											
OLAH	55301	broad.mit.edu	37	chr10	15107658	15107658	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattaccttatggaatttGgaggcacccccaagcatttt	8	10	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15107658	T	T	15107658	4	4	8	1	0	0	0	0	0	1	0	0	10946	1349	47	2	659	2	OLAH	10	15107658	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	9151868	15107658	120427089	326	7789											
ARMC3	219681	broad.mit.edu	37	chr10	23250786	23250786	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtattttgcttaaaaaaaTtattgatcatctgtattttg	5	3	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23250786	A	A	23250786	1	1	8	0	1	0	0	0	0	0	0	0	956	1508	52	5		5	ARMC3	10	23250786	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	8143128	23250786	112283961	327	7790											
SYT15	83849	broad.mit.edu	37	chr10	46964083	46964083	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcagagcccctgcctgtggGaggtccggctaggagggcac	17	12	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46964083	C	C	46964083	1	2	8	0	1	0	0	0	0	0	0	0	15590	1189	41	4		4	SYT15	10	46964083	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	23713297	46964083	88570664	328	7791											
OGDHL	55753	broad.mit.edu	37	chr10	50966404	50966404	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagggcttccctcccttgCggtggcccagggtagggtgg	17	13	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50966404	T	T	50966404	1	4	8	0	1	0	0	0	0	0	0	0	10935	783	27	4		4	OGDHL	10	50966404	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	4002321	50966404	84568343	329	7792											
PCDH15	65217	broad.mit.edu	37	chr10	55700697	55700697	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagaaattacaccaaccAtggtccctttggtggcaagt	9	11	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55700697	G	G	55700697	3	3	8	1	0	0	0	0	1	0	0	0	11605	217	8	5	4365	5	PCDH15	10	55700697	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	4734293	55700697	79834050	330	7793											
PCDH15	65217	broad.mit.edu	37	chr10	55755635	55755636	+	Intron	DNP	CC	AA	AA													aacttatttaccactgtcagCcttccatcctctcaattcca							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55755636	AA	AA	55755635	1	1	8	0	1	0	0	0	0	0	0	0	11605	754	26	3		3	PCDH15	10	55755635	Intron	DNP	CC	TCGA-05-4395-01A-01D-1265-08	54938	55755635	79779112	331	7794											
IPMK	253430	broad.mit.edu	37	chr10	59975836	59975836	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatatattagtactacaatGacatccataattttcaaggg	6	6	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59975836	A	A	59975836	1	1	8	0	1	0	0	0	0	0	0	0	7862	1305	45	4		4	IPMK	10	59975836	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4220201	59975836	75558911	332	7795											
BICC1	80114	broad.mit.edu	37	chr10	60588570	60588570	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcgccaaatgcacgcacCtctttcctggaaggtggagc	11	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60588570	T	T	60588570	2	4	8	1	0	0	0	0	0	0	0	1	1433	668	24	4		4	BICC1	10	60588570	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	612734	60588570	74946177	333	7796											
CDK1	983	broad.mit.edu	37	chr10	62547906	62547906	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacctcaaaatctcttgaTtgatgacaaaggaacaatta	5	7	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62547906	A	A	62547906	3	1	8	1	0	0	0	0	1	0	0	0	3154	1493	52	5	433	5	CDK1	10	62547906	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	1959336	62547906	72986841	334	7797											
CTNNA3	29119	broad.mit.edu	37	chr10	68280485	68280485	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccatggtgtttttgaccGcttgacttttgggtcttgca	10	8	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68280485	A	A	68280485	3	1	8	1	0	0	0	0	1	0	0	0	4048	1087	38	4	1298	4	CTNNA3	10	68280485	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	5732579	68280485	67254262	335	7798											
SLC29A3	55315	broad.mit.edu	37	chr10	73121984	73121984	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaagtttttcatccccctCactaccttcctcctgtacaa	2	17	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73121984	T	T	73121984	2	4	8	1	0	0	0	0	0	0	0	1	14650	813	29	4		4	SLC29A3	10	73121984	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	4841499	73121984	62412763	336	7799											
CDH23	64072	broad.mit.edu	37	chr10	73548819	73548819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggtgctgggcccacccGggagctcctgctgttgccag	16	13	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73548819	T	T	73548819	1	4	8	0	1	0	0	0	0	0	0	0	3138	1131	39	1		1	CDH23	10	73548819	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	426835	73548819	61985928	337	7800											
TTC18	118491	broad.mit.edu	37	chr10	75051834	75051834	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttttatgcatacgacatCacatggtaaacactgtaaat	5	7	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75051834	T	T	75051834	1	4	8	0	1	0	0	0	0	0	0	0	16811	841	29	4		4	TTC18	10	75051834	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1503015	75051834	60482913	338	7801											
SEC24C	9632	broad.mit.edu	37	chr10	75528692	75528692	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgattgaagagcaggttggGgggctaaatatggaagggag	18	3	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75528692	A	A	75528692	1	1	8	0	1	0	0	0	0	0	0	0	14109	1247	43	4		4	SEC24C	10	75528692	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	476858	75528692	60006055	339	7802											
CYP26A1	1592	broad.mit.edu	37	chr10	94836570	94836570	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttctgccctatatggagaTatgtttcagcaacctggatc	9	9	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94836570	C	C	94836570	1	2	8	0	1	0	0	0	0	0	0	0	4188	1421	49	5		5	CYP26A1	10	94836570	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	19307878	94836570	40698177	340	7803											
CC2D2B	387707	broad.mit.edu	37	chr10	97769676	97769676	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctgctcttctgcaacaatCtgaggtaagagaaaatgctt	8	8	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97769676	A	A	97769676	3	1	8	1	0	0	0	0	1	0	0	0	2755	913	32	3	122	3	CC2D2B	10	97769676	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2933106	97769676	37765071	341	7804											
SLIT1	6585	broad.mit.edu	37	chr10	98770956	98770956	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggccaggggagcgcaCcagggatcccccacacagtc	15	14	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98770956	T	T	98770956	1	4	8	0	1	0	0	0	0	0	0	0	14853	522	18	4		4	SLIT1	10	98770956	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1001280	98770956	36763791	342	7805											
DNMBP	23268	broad.mit.edu	37	chr10	101646282	101646282	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcccgttctgtacagttataGaagtccaggagcttgtcaaa	10	9	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101646282	C	C	101646282	3	2	8	1	0	0	0	0	1	0	0	0	4714	933	33	4	1360	4	DNMBP	10	101646282	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2875326	101646282	33888465	343	7806											
PDCD11	22984	broad.mit.edu	37	chr10	105191887	105191887	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttcctttctgcaaacagtGagctggaggatggccacact	10	10	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105191887	C	C	105191887	3	2	8	1	0	0	0	0	1	0	0	0	11711	1304	45	4	3452	4	PDCD11	10	105191887	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	3545605	105191887	30342860	344	7807											
SORCS3	22986	broad.mit.edu	37	chr10	106970956	106970956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctttctggtacaatccaGcatccccatcaaaggactgc	7	14	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106970956	T	T	106970956	3	4	8	1	0	0	0	0	1	0	0	0	15046	971	34	3	2389	3	SORCS3	10	106970956	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1779069	106970956	28563791	345	7808											
XPNPEP1	7511	broad.mit.edu	37	chr10	111633292	111633292	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccccatacaatgctggtggGcatgtaaaatagcacagcca	10	11	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111633292	C	C	111633292	1	2	8	0	1	0	0	0	0	0	0	0	17569	1218	42	4		4	XPNPEP1	10	111633292	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4662336	111633292	23901455	346	7809											
ZDHHC6	64429	broad.mit.edu	37	chr10	114192186	114192186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgcagctgtattcgagGctcttcggtgcagggacttg	13	8	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114192186	T	T	114192186	3	4	8	1	0	0	0	0	1	0	0	0	17745	1203	42	3	214	3	ZDHHC6	10	114192186	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2558894	114192186	21342561	347	7810											
NRAP	4892	broad.mit.edu	37	chr10	115422452	115422452	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttaccccactgatggcctCtggaaatgtcctcacattta	6	13	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115422452	G	G	115422452	3	3	8	1	0	0	0	0	1	0	0	0	10733	922	32	4	5111	4	NRAP	10	115422452	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1230266	115422452	20112295	348	7811											
ATRNL1	26033	broad.mit.edu	37	chr10	117704368	117704368	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttctatggccttggattTtatggaggcagatctctgta	11	7	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117704368	A	A	117704368	1	1	8	0	1	0	0	0	0	0	0	0	1211	1856	64	5		5	ATRNL1	10	117704368	3'UTR	SNP	T	TCGA-05-4395-01A-01D-1265-08	2281916	117704368	17830379	349	7812											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118360714	118360714	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggctagcaatttcgctcGtaagttgcactttgactacc	9	10	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118360714	T	T	118360714	5	4	8	1	0	0	0	0	0	0	1	0	12245	1159	40	3	1098	3	PNLIPRP1	10	118360714	Splice_Site	SNP	G	TCGA-05-4395-01A-01D-1265-08	656346	118360714	17174033	350	7813											
PRDX3	10935	broad.mit.edu	37	chr10	120933463	120933463	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtggtctaacaactagttCaacttgctaagggtaaaaaa	8	6	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120933463	T	T	120933463	1	4	8	0	1	0	0	0	0	0	0	0	12572	841	29	4		4	PRDX3	10	120933463	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2572749	120933463	14601284	351	7814											
RGS10	6001	broad.mit.edu	37	chr10	121275047	121275047	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggagtttctggaacatcaGagggtgcggttcttccagga	14	8	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121275047	A	A	121275047	2	1	8	1	0	0	0	0	0	0	0	1	13402	933	33	4		4	RGS10	10	121275047	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	341584	121275047	14259700	352	7815											
BTBD16	118663	broad.mit.edu	37	chr10	124043431	124043431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaggacatccaaagtgGggaagcaggtgagtttgtgt	15	5	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124043431	T	T	124043431	3	4	8	1	0	0	0	0	1	0	0	0	1550	1232	43	2	243	2	BTBD16	10	124043431	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2768384	124043431	11491316	353	7816											
DMBT1	1755	broad.mit.edu	37	chr10	124395614	124395614	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccagaggctccttcacttCttcctccaacttcatgtcca	6	16	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124395614	T	T	124395614	3	4	8	1	0	0	0	0	1	0	0	0	4617	913	32	4	6467	4	DMBT1	10	124395614	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	352183	124395614	11139133	354	7817											
GPR26	2849	broad.mit.edu	37	chr10	125426265	125426265	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcttcccgctgagctaCcgggccaagatgcgcctccg	13	15	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125426265	A	A	125426265	4	1	8	1	0	0	0	0	0	1	0	0	6749	518	18	3	344	3	GPR26	10	125426265	Nonsense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1030651	125426265	10108482	355	7818											
CTBP2	1488	broad.mit.edu	37	chr10	126716241	126716241	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccagaggccgcagggactCggcgttctcccaggggccct	14	17	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126716241	T	T	126716241	1	4	8	0	1	0	0	0	0	0	0	0	4032	893	31	4		4	CTBP2	10	126716241	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1289976	126716241	8818506	356	7819											
FANK1	92565	broad.mit.edu	37	chr10	127697946	127697946	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgtttatctagagtgTagtctccttattagaagaaa	8	4	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127697946	C	C	127697946	3	2	8	1	0	0	0	0	1	0	0	0	5729	1638	57	5	1019	5	FANK1	10	127697946	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	981705	127697946	7836801	357	7820											
ADAM12	8038	broad.mit.edu	37	chr10	127708205	127708205	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctggcttggattagtcGtggttggtcccacaagagtt	13	8	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127708205	A	A	127708205	1	1	8	0	1	0	0	0	0	0	0	0	236	1160	40	4		4	ADAM12	10	127708205	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	10259	127708205	7826542	358	7821											
DOCK1	1793	broad.mit.edu	37	chr10	128841103	128841103	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttcagttgtaaatccaatCagagatgaattggggtggca	11	5	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128841103	T	T	128841103	1	4	8	0	1	0	0	0	0	0	0	0	4724	841	29	4		4	DOCK1	10	128841103	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1132898	128841103	6693644	359	7822											
FOXI2	399823	broad.mit.edu	37	chr10	129536807	129536807	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggcaattactggaccctgGaccccaactgcgagaagatg	11	11	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129536807	A	A	129536807	3	1	8	1	0	0	0	0	1	0	0	0	6070	1174	41	4	541	4	FOXI2	10	129536807	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	695704	129536807	5997940	360	7823											
EBF3	253738	broad.mit.edu	37	chr10	131665592	131665592	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctatgagaggcggacacttGccagttggatataattacca	11	8	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131665592	C	C	131665592	1	2	8	0	1	0	0	0	0	0	0	0	4922	1334	46	4		4	EBF3	10	131665592	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2128785	131665592	3869155	361	7824											
JAKMIP3	282973	broad.mit.edu	37	chr10	133958651	133958651	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaagtgcagagggcacaggCgcggatagaggacctggaga	18	8	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133958651	T	T	133958651	3	4	8	1	0	0	0	0	1	0	0	0	8012	768	27	4	1685	4	JAKMIP3	10	133958651	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2293059	133958651	1576096	362	7825											
ATHL1	80162	broad.mit.edu	37	chr11	292927	292927	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggtggctgggacgtggtCagggctgtggccgagttttg	20	7	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	292927	T	T	292927	2	4	8	1	0	0	0	0	0	0	0	1	1108	813	29	4		4	ATHL1	11	292927	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08		292927	134713589	363	7826											
SIGIRR	59307	broad.mit.edu	37	chr11	407965	407965	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcttgtagggcctgcggaTgggttgcctgagccgctgcc	17	11	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	407965	C	C	407965	1	2	8	0	1	0	0	0	0	0	0	0	14417	1479	51	5		5	SIGIRR	11	407965	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	115038	407965	134598551	364	7827											
TNNT3	7140	broad.mit.edu	37	chr11	1955113	1955113	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggggctggtggactccctCggaggagccggggacagggc	20	11	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1955113	T	T	1955113	1	4	8	0	1	0	0	0	0	0	0	0	16455	899	31	4		4	TNNT3	11	1955113	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1547148	1955113	133051403	365	7828											
CD81	975	broad.mit.edu	37	chr11	2404476	2404476	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgctgccttttcgcccctgGaggccacaacggggtcagag	13	13	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2404476	A	A	2404476	1	1	8	0	1	0	0	0	0	0	0	0	3069	1189	41	4		4	CD81	11	2404476	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	449363	2404476	132602040	366	7829											
OSBPL5	114879	broad.mit.edu	37	chr11	3147662	3147662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgctgtccccagagcCaggctctggctcatggatcc	10	15	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3147662	A	A	3147662	1	1	8	0	1	0	0	0	0	0	0	0	11374	609	21	2		2	OSBPL5	11	3147662	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	743186	3147662	131858854	367	7830											
OR52E4	390081	broad.mit.edu	37	chr11	5905694	5905694	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaactgaacatagtctaCaccagcccatgttctacttc	4	13	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5905694	G	G	5905694	3	3	8	1	0	0	0	0	1	0	0	0	11210	478	17	4	174	4	OR52E4	11	5905694	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2758032	5905694	129100822	368	7831											
OR56A1	120796	broad.mit.edu	37	chr11	6048374	6048374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggacacagacaagttGgcacagatgcagttctcaat	10	10	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6048374	T	T	6048374	2	4	8	1	0	0	0	0	0	0	0	1	11227	1335	47	2		2	OR56A1	11	6048374	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	142680	6048374	128958142	369	7832											
OR2AG2	338755	broad.mit.edu	37	chr11	6789756	6789756	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggatccaggatgtggccaCcatgatccagcagactcttg	11	12	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6789756	T	T	6789756	3	4	8	1	0	0	0	0	1	0	0	0	11079	507	18	4	521	4	OR2AG2	11	6789756	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	741382	6789756	128216760	370	7833											
ZNF214	7761	broad.mit.edu	37	chr11	7022088	7022088	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgtcaacttcatcacatcCgtacagcttcttacctatgt	4	14	4	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7022088	T	T	7022088	3	4	8	1	0	0	0	0	1	0	0	0	17896	661	23	4	998	4	ZNF214	11	7022088	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	232332	7022088	127984428	371	7834											
STK33	65975	broad.mit.edu	37	chr11	8578924	8578924	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatggaaggaaggaaggaagGaaggaaaaaaggaggggaaa	19	0	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8578924	C	C	8578924	1	2	8	0	1	0	0	0	0	0	0	0	15418	1189	41	4		4	STK33	11	8578924	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1556836	8578924	126427592	372	7835											
SLC17A6	57084	broad.mit.edu	37	chr11	22396178	22396178	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgagtaagtgatcatttgGaaagattatttttccttcct	7	5	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22396178	A	A	22396178	1	1	8	0	1	0	0	0	0	0	0	0	14534	1189	41	4		4	SLC17A6	11	22396178	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	13817254	22396178	112610338	373	7836											
QSER1	79832	broad.mit.edu	37	chr11	32990614	32990614	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagctacttttacctcatatGaaaaaaatagatggcatgct	7	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32990614	T	T	32990614	3	4	8	1	0	0	0	0	1	0	0	0	12990	1290	45	3	4773	3	QSER1	11	32990614	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	10594436	32990614	102015902	374	7837											
C11orf41	25758	broad.mit.edu	37	chr11	33566049	33566049	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccaagtagtcacctcattGatcctgtgcccacctgagct	7	16	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33566049	C	C	33566049	1	2	8	0	1	0	0	0	0	0	0	0	1652	1305	45	4		4	C11orf41	11	33566049	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	575435	33566049	101440467	375	7838											
TRAF6	7189	broad.mit.edu	37	chr11	36520017	36520017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttttatacatgtgctaaCagctagaaaagaactttaat	5	7	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36520017	A	A	36520017	1	1	8	0	1	0	0	0	0	0	0	0	16569	493	17	3		3	TRAF6	11	36520017	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2953968	36520017	98486499	376	7839											
EXT2	2132	broad.mit.edu	37	chr11	44165921	44165921	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagaaaaccgggcccagcaGaaatgaatctctagtctctt	8	10	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44165921	A	A	44165921	1	1	8	0	1	0	0	0	0	0	0	0	5367	957	33	4		4	EXT2	11	44165921	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	7645904	44165921	90840595	377	7840											
ALX4	60529	broad.mit.edu	37	chr11	44286612	44286612	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtcggtgacgctgctgGccccagagccaggggggtgg	20	10	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44286612	A	A	44286612	3	1	8	1	0	0	0	0	1	0	0	0	558	1203	42	4	211	4	ALX4	11	44286612	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	120691	44286612	90719904	378	7841											
TRIM48	79097	broad.mit.edu	37	chr11	55034988	55034988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagatgctgaaaaagaagGgaaaagatatttttcatcaa	10	3	2	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55034988	T	T	55034988	1	4	8	0	1	0	0	0	0	0	0	0	16648	1247	43	2		2	TRIM48	11	55034988	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	10748376	55034988	79971528	379	7842											
OR8I2	120586	broad.mit.edu	37	chr11	55860777	55860777	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaagtcaaaggcctgagttGatgtaaatggctggcaacaa	12	6	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55860777	T	T	55860777	1	4	8	0	1	0	0	0	0	0	0	0	11334	1305	45	3		3	OR8I2	11	55860777	5'Flank	SNP	G	TCGA-05-4395-01A-01D-1265-08	825789	55860777	79145739	380	7843											
OR5M9	390162	broad.mit.edu	37	chr11	56230566	56230566	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacctccacgtggacaacGgcaatgaaaaagtagcactg	10	10	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56230566	T	T	56230566	2	4	8	1	0	0	0	0	0	0	0	1	11271	1103	39	1		1	OR5M9	11	56230566	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	369789	56230566	78775950	381	7844											
OR5AN1	390195	broad.mit.edu	37	chr11	59132388	59132388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgggagcctacatgactGgcctcactgcttctttattc	8	12	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59132388	A	A	59132388	3	1	8	1	0	0	0	0	1	0	0	0	11237	1348	47	4	459	4	OR5AN1	11	59132388	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2901822	59132388	75874128	382	7845											
MS4A6E	245802	broad.mit.edu	37	chr11	60105568	60105568	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtaaatcaaaggggggctGcatggatgagattaagggga	16	3	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60105568	A	A	60105568	1	1	8	0	1	0	0	0	0	0	0	0	9959	1334	46	4		4	MS4A6E	11	60105568	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	973180	60105568	74900948	383	7846											
CD6	923	broad.mit.edu	37	chr11	60785317	60785317	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catccctgggccctcagtatCacccgaggagcaacagtgag	11	14	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60785317	T	T	60785317	3	4	8	1	0	0	0	0	1	0	0	0	3058	826	29	4	1711	4	CD6	11	60785317	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	679749	60785317	74221199	384	7847											
GANAB	23193	broad.mit.edu	37	chr11	62400265	62400265	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaactggccccaggctgcGttatatgctaacaccactcc	8	15	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62400265	A	A	62400265	1	1	8	0	1	0	0	0	0	0	0	0	6295	1160	40	4		4	GANAB	11	62400265	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1614948	62400265	72606251	385	7848											
ATG2A	23130	broad.mit.edu	37	chr11	64665699	64665699	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcctggagacagtggggtCaccctaggctctgccctcac	13	14	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64665699	T	T	64665699	1	4	8	0	1	0	0	0	0	0	0	0	1097	841	29	4		4	ATG2A	11	64665699	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2265434	64665699	70340817	386	7849											
C11orf85	283129	broad.mit.edu	37	chr11	64722102	64722102	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttcctttgcaaaggagaTgtagcaggaggaagccaagt	13	6	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64722102	C	C	64722102	1	2	8	0	1	0	0	0	0	0	0	0	1680	1479	51	5		5	C11orf85	11	64722102	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	56403	64722102	70284414	387	7850											
SYVN1	84447	broad.mit.edu	37	chr11	64900727	64900727	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggatgtacaggacctaGgagtggggagaggctgtggt	19	6	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64900727	A	A	64900727	1	1	8	0	1	0	0	0	0	0	0	0	15606	1015	35	4		4	SYVN1	11	64900727	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	178625	64900727	70105789	388	7851											
DPF2	5977	broad.mit.edu	37	chr11	65113779	65113779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgaagacataccgctgGcagtgcatcgagtgcaaatg	13	9	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65113779	T	T	65113779	3	4	8	1	0	0	0	0	1	0	0	0	4757	1212	42	3	1000	3	DPF2	11	65113779	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	213052	65113779	69892737	389	7852											
CARNS1	57571	broad.mit.edu	37	chr11	67191644	67191644	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agctgaccggggctgggcctCggcttatcgagatcaacccc	13	14	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67191644	T	T	67191644	3	4	8	1	0	0	0	0	1	0	0	0	2682	875	31	4	2459	4	CARNS1	11	67191644	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2077865	67191644	67814872	390	7853											
TPCN2	219931	broad.mit.edu	37	chr11	68835056	68835056	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctggtgctgctgaccaCggccaacaaccccgatggtg	11	16	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68835056	T	T	68835056	3	4	8	1	0	0	0	0	1	0	0	0	16520	536	19	4	842	4	TPCN2	11	68835056	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1643412	68835056	66171460	391	7854											
SLCO2B1	11309	broad.mit.edu	37	chr11	74914095	74914095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggggcacaggcatgagcGgaattcaatccctgatctta	11	11	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74914095	A	A	74914095	1	1	8	0	1	0	0	0	0	0	0	0	14841	1131	39	4		4	SLCO2B1	11	74914095	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6079039	74914095	60092421	392	7855											
ODZ4	26011	broad.mit.edu	37	chr11	78433860	78433860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaggccgttgcagctgGggcaggagatgcttctccgg	16	11	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78433860	T	T	78433860	3	4	8	1	0	0	0	0	1	0	0	0	10932	1232	43	2	4700	2	ODZ4	11	78433860	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	3519765	78433860	56572656	393	7856											
SYTL2	54843	broad.mit.edu	37	chr11	85428555	85428555	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcattcatttgtaactggcTtctgatctggtttctcatct	7	10	5	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85428555	C	C	85428555	1	2	8	0	1	0	0	0	0	0	0	0	15602	1609	56	5		5	SYTL2	11	85428555	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	6994695	85428555	49577961	394	7857											
CCDC83	220047	broad.mit.edu	37	chr11	85568543	85568543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccccaccaacctcatcCacaccaagtacccacagctc	5	21	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85568543	A	A	85568543	1	1	8	0	1	0	0	0	0	0	0	0	2885	609	21	2		2	CCDC83	11	85568543	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	139988	85568543	49437973	395	7858											
FAT3	120114	broad.mit.edu	37	chr11	92534618	92534618	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgaatgacaacaagccagtCtttgaaacttcaagctatga	7	8	2	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92534618	G	G	92534618	2	3	8	1	0	0	0	0	0	0	0	1	5748	900	32	4		4	FAT3	11	92534618	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	6966075	92534618	42471898	396	7859											
DYNC2H1	79659	broad.mit.edu	37	chr11	103191726	103191726	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttagttaatattttagaaaTgaaattaatgagtgtttttt	6	0	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103191726	A	A	103191726	1	1	8	0	1	0	0	0	0	0	0	0	4886	1479	51	5		5	DYNC2H1	11	103191726	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	10657108	103191726	31814790	397	7860											
CASP1	834	broad.mit.edu	37	chr11	104903742	104903742	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatcctacaaaattaatgtCaaggaagatgtgggtcaaag	10	5	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104903742	G	G	104903742	1	3	8	0	1	0	0	0	0	0	0	0	2694	841	29	4		4	CASP1	11	104903742	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1712016	104903742	30102774	398	7861											
FAM55A	120400	broad.mit.edu	37	chr11	114401171	114401171	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagagagccgacgccccttCactggggtggatgagcagca	14	13	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114401171	G	G	114401171	3	3	8	1	0	0	0	0	1	0	0	0	5635	835	29	4	1100	4	FAM55A	11	114401171	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	9497429	114401171	20605345	399	7862											
UBE4A	9354	broad.mit.edu	37	chr11	118250358	118250358	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcctaaacttgcaggtgtCcatggctgttctactggttc	10	11	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118250358	T	T	118250358	3	4	8	1	0	0	0	0	1	0	0	0	17008	855	30	4	1828	4	UBE4A	11	118250358	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	3849187	118250358	16756158	400	7863											
DPAGT1	1798	broad.mit.edu	37	chr11	118969218	118969218	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttggaagcaaggaagaaaGaaggaaaagttaatacccac	10	6	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118969218	C	C	118969218	1	2	8	0	1	0	0	0	0	0	0	0	4750	957	33	4		4	DPAGT1	11	118969218	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	718860	118969218	16037298	401	7864											
GRAMD1B	57476	broad.mit.edu	37	chr11	123479337	123479337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccctccgctgtcactGtctacttcctgatcctctct	4	20	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123479337	T	T	123479337	1	4	8	0	1	0	0	0	0	0	0	0	6814	1392	48	3		3	GRAMD1B	11	123479337	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4510119	123479337	11527179	402	7865											
OR6T1	219874	broad.mit.edu	37	chr11	123814374	123814374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaggaagaagtacatctGtatgtgcaggcgttggtcta	13	8	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123814374	T	T	123814374	3	4	8	1	0	0	0	0	1	0	0	0	11304	1386	48	3	802	3	OR6T1	11	123814374	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	335037	123814374	11192142	403	7866											
VSIG2	23584	broad.mit.edu	37	chr11	124621476	124621476	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcacctccacggccagcCctggggccggggaccagagg	14	17	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124621476	T	T	124621476	3	4	8	1	0	0	0	0	1	0	0	0	17351	637	22	4	945	4	VSIG2	11	124621476	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	807102	124621476	10385040	404	7867											
PRDM10	56980	broad.mit.edu	37	chr11	129814846	129814846	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agcaccggccggttggggatCgggtgcaaggggccgtgctt	19	10	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129814846	G	G	129814846	2	3	8	1	0	0	0	0	0	0	0	1	12557	871	31	4		4	PRDM10	11	129814846	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	5193370	129814846	5191670	405	7868											
CACNA1C	775	broad.mit.edu	37	chr12	2742684	2742684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagggcgtccggaactcCagaggcaacacggaggtgcc	17	11	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2742684	A	A	2742684	1	1	8	0	1	0	0	0	0	0	0	0	2566	609	21	2		2	CACNA1C	12	2742684	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08		2742684	131109211	406	7869											
NRIP2	83714	broad.mit.edu	37	chr12	2936904	2936904	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtcactgctgccctcCtcttagccgttgctccttct	8	16	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2936904	T	T	2936904	1	4	8	0	1	0	0	0	0	0	0	0	10748	696	24	4		4	NRIP2	12	2936904	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	194220	2936904	130914991	407	7870											
NRIP2	83714	broad.mit.edu	37	chr12	2943997	2943997	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggcctcctgcttggtgctCatggcccctgctggaggagt	14	13	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2943997	G	G	2943997	3	3	8	1	0	0	0	0	1	0	0	0	10748	826	29	4	716	4	NRIP2	12	2943997	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	7093	2943997	130907898	408	7871											
PRMT8	56341	broad.mit.edu	37	chr12	3686040	3686040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctctgctcccacagggtGggagaatgtctatggctttg	13	9	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3686040	T	T	3686040	3	4	8	1	0	0	0	0	1	0	0	0	12648	1357	47	2	742	2	PRMT8	12	3686040	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	742043	3686040	130165855	409	7872											
RAD51AP1	10635	broad.mit.edu	37	chr12	4648105	4648105	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccaagccttgaaagggacCatggtgcggcctgtgaggtg	15	9	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4648105	T	T	4648105	1	4	8	0	1	0	0	0	0	0	0	0	13094	609	21	4		4	RAD51AP1	12	4648105	5'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	962065	4648105	129203790	410	7873											
AKAP3	10566	broad.mit.edu	37	chr12	4745055	4745055	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctggctaagaaccaccactCttagatctctccattttttc	4	13	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4745055	T	T	4745055	1	4	8	0	1	0	0	0	0	0	0	0	452	928	32	4		4	AKAP3	12	4745055	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	96950	4745055	129106840	411	7874											
ANO2	57101	broad.mit.edu	37	chr12	5672774	5672774	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggctgagttggagaggCccggcctggggaggtggcgg	24	7	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5672774	T	T	5672774	1	4	8	0	1	0	0	0	0	0	0	0	697	754	26	4		4	ANO2	12	5672774	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	927719	5672774	128179121	412	7875											
IFFO1	25900	broad.mit.edu	37	chr12	6658970	6658970	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgctgctgagccacatcGcagagcttggcggtgatgtc	14	11	0	3	rs138562505		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6658970	A	A	6658970	2	1	8	1	0	0	0	0	0	0	0	1	7580	1079	38	4		4	IFFO1	12	6658970	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	986196	6658970	127192925	413	7876											
NOP2	4839	broad.mit.edu	37	chr12	6675688	6675688	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcatccagctcttagtttCacggaccttttggtagcttt	8	10	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6675688	T	T	6675688	1	4	8	0	1	0	0	0	0	0	0	0	10633	841	29	4		4	NOP2	12	6675688	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	16718	6675688	127176207	414	7877											
PTMS	5763	broad.mit.edu	37	chr12	6879667	6879668	+	3'UTR	INS	-	C	C													cctggaggtgggggtgggggINScagccaagtccagccactct					rs141146858	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6879668	C	C	6879667	6	5	8	0	1	1	1	0	0	0	0	0	12873	1218	42	0		0	PTMS	12	6879667	3'UTR	INS	-	TCGA-05-4395-01A-01D-1265-08	203979	6879667	126972228	415	7878											
CLEC12B	387837	broad.mit.edu	37	chr12	10167429	10167429	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accacctaagagtattgagaGagttatgtcatccagtgaac	9	8	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10167429	C	C	10167429	1	2	8	0	1	0	0	0	0	0	0	0	3530	957	33	4		4	CLEC12B	12	10167429	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3287762	10167429	123684466	416	7879											
KLRD1	3824	broad.mit.edu	37	chr12	10460674	10460674	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgctcttggaacataatttCtcatggcaggtatgtgtgat	10	7	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10460674	G	G	10460674	1	3	8	0	1	0	0	0	0	0	0	0	8490	928	32	4		4	KLRD1	12	10460674	5'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	293245	10460674	123391221	417	7880											
KLRC4	8302	broad.mit.edu	37	chr12	10560232	10560232	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgaaacatttacgtctTaccatttcttcctcattatc	4	10	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10560232	C	C	10560232	1	2	8	0	1	0	0	0	0	0	0	0	8489	1769	61	5		5	KLRC4	12	10560232	3'UTR	SNP	T	TCGA-05-4395-01A-01D-1265-08	99558	10560232	123291663	418	7881											
KLRC3	3823	broad.mit.edu	37	chr12	10584686	10584686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatatattttttatatagcGccatacaaaagaacttactt	3	6	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10584686	A	A	10584686	1	1	8	0	1	0	0	0	0	0	0	0	8488	1102	38	4		4	KLRC3	12	10584686	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	24454	10584686	123267209	419	7882											
TAS2R13	50838	broad.mit.edu	37	chr12	11061032	11061032	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaccaaaagaaaggcctgtCttaacttagcgtttcctaga	7	11	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11061032	G	G	11061032	3	3	8	1	0	0	0	0	1	0	0	0	15686	913	32	4	49	4	TAS2R13	12	11061032	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	476346	11061032	122790863	420	7883											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	8	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	14337252	25398284	108453611	421	7884											
ITPR2	3709	broad.mit.edu	37	chr12	26749907	26749907	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagtgtagacatttttcCcctctgtgcatgctgccagc	8	12	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26749907	T	T	26749907	3	4	8	1	0	0	0	0	1	0	0	0	7991	623	22	4	4050	4	ITPR2	12	26749907	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1351623	26749907	107101988	422	7885											
OVCH1	341350	broad.mit.edu	37	chr12	29650551	29650551	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgcccaggtccctaggCtcacctaggcttctggggtg	14	13	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29650551	T	T	29650551	1	4	8	0	1	0	0	0	0	0	0	0	11417	812	28	4		4	OVCH1	12	29650551	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2900644	29650551	104201344	423	7886											
LRRK2	120892	broad.mit.edu	37	chr12	40702895	40702895	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattaaaaaaatttgtctctAatctttatttaggtcgtgag	7	4	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40702895	T	T	40702895	1	4	8	0	1	0	0	0	0	0	0	0	9120	377	13	5		5	LRRK2	12	40702895	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	11052344	40702895	93149000	424	7887											
CNTN1	1272	broad.mit.edu	37	chr12	41303990	41303990	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctttaaactattaactctCtaaactttaaggcaaatggt	5	7	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41303990	A	A	41303990	1	1	8	0	1	0	0	0	0	0	0	0	3672	928	32	3		3	CNTN1	12	41303990	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	601095	41303990	92547905	425	7888											
ADAMTS20	80070	broad.mit.edu	37	chr12	43846211	43846211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacaacgatcctttgtgcCaactgtaaaaaagaaaaagg	7	7	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43846211	A	A	43846211	3	1	8	1	0	0	0	0	1	0	0	0	266	594	21	2	3890	2	ADAMTS20	12	43846211	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2542221	43846211	90005684	426	7889											
NELL2	4753	broad.mit.edu	37	chr12	45105228	45105228	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttatcattaggacttgtTaagaagtttccagatccagc	7	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45105228	A	A	45105228	1	1	8	0	1	0	0	0	0	0	0	0	10429	1769	61	5		5	NELL2	12	45105228	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	1259017	45105228	88746667	427	7890											
OR10AD1	121275	broad.mit.edu	37	chr12	48596695	48596695	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatagttaagtgggtagcaGatagcaacataacggtcata	10	6	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48596695	A	A	48596695	2	1	8	1	0	0	0	0	0	0	0	1	10990	932	33	4		4	OR10AD1	12	48596695	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	3491467	48596695	85255200	428	7891											
GRASP	160622	broad.mit.edu	37	chr12	52402862	52402862	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaaaacaggtgtggatgtgGagctgggaaggggcagacag	18	6	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52402862	C	C	52402862	1	2	8	0	1	0	0	0	0	0	0	0	6821	1189	41	4		4	GRASP	12	52402862	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3806167	52402862	81449033	429	7892											
KRT6B	3854	broad.mit.edu	37	chr12	52843064	52843064	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctatcgtagcttgcctcctGcattgggttgtttttcctcc	8	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52843064	C	C	52843064	1	2	8	0	1	0	0	0	0	0	0	0	8552	1334	46	4		4	KRT6B	12	52843064	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	440202	52843064	81008831	430	7893											
KRT2	3849	broad.mit.edu	37	chr12	53041648	53041648	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctcctcatactgatatgGggagaagaggacagtttgca	13	7	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53041648	A	A	53041648	1	1	8	0	1	0	0	0	0	0	0	0	8528	1247	43	4		4	KRT2	12	53041648	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	198584	53041648	80810247	431	7894											
MMP19	4327	broad.mit.edu	37	chr12	56230818	56230818	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattgtgtctgtgggtgagcAgtcagtattcaaacgtggtt	14	5	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56230818	T	T	56230818	1	4	8	0	1	0	0	0	0	0	0	0	9750	203	7	5		5	MMP19	12	56230818	3'UTR	SNP	A	TCGA-05-4395-01A-01D-1265-08	3189170	56230818	77621077	432	7895											
GLS2	27165	broad.mit.edu	37	chr12	56881845	56881845	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggtgaccccagcctcctcGcccgcagtgactgccagccc	11	20	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56881845	C	C	56881845	3	2	8	1	0	0	0	0	1	0	0	0	6528	1095	38	4	1822	4	GLS2	12	56881845	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	651027	56881845	76970050	433	7896											
ATP5B	506	broad.mit.edu	37	chr12	57037225	57037225	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagttgataacaccagattCaatcatttcatggtataaat	5	6	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57037225	T	T	57037225	3	4	8	1	0	0	0	0	1	0	0	0	1152	835	29	4	859	4	ATP5B	12	57037225	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	155380	57037225	76814670	434	7897											
PRIM1	5557	broad.mit.edu	37	chr12	57136825	57136825	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctttattttcgagaatatCttgattaaccaaggcatatt	5	6	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57136825	T	T	57136825	3	4	8	1	0	0	0	0	1	0	0	0	12596	913	32	4	596	4	PRIM1	12	57136825	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	99600	57136825	76715070	435	7898											
GLI1	2735	broad.mit.edu	37	chr12	57863398	57863398	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtccactcttcgccgccTtgagaacctcaggctggacc	9	16	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57863398	G	G	57863398	3	3	8	1	0	0	0	0	1	0	0	0	6501	1609	56	5	1531	5	GLI1	12	57863398	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	726573	57863398	75988497	436	7899											
PPM1H	57460	broad.mit.edu	37	chr12	63225839	63225839	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctaatgtcttccagtgggaCcaaagtgtgtgccattcttc	9	11	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63225839	G	G	63225839	1	3	8	0	1	0	0	0	0	0	0	0	12442	522	18	4		4	PPM1H	12	63225839	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5362441	63225839	70626056	437	7900											
PTPRB	5787	broad.mit.edu	37	chr12	71016248	71016249	+	Missense_Mutation	DNP	GG	AT	AT													attccagtcatgtgcagattGggatgctgcctctcgctgct							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	71016249	AT	AT	71016248	3	1	8	1	0	0	0	0	1	0	0	0	12904	1335	47	4	6203	4	PTPRB	12	71016248	Missense_Mutation	DNP	GG	TCGA-05-4395-01A-01D-1265-08	7790409	71016248	62835647	438	7901											
LGR5	8549	broad.mit.edu	37	chr12	71971889	71971889	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgcacagattacctgcctCtgtgttctccatgcctagag	8	12	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71971889	T	T	71971889	1	4	8	0	1	0	0	0	0	0	0	0	8829	928	32	4		4	LGR5	12	71971889	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	955641	71971889	61880006	439	7902											
LGR5	8549	broad.mit.edu	37	chr12	71978259	71978259	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccttctctacatcttgttCaatcctcactttaaggagga	5	13	4	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71978259	T	T	71978259	2	4	8	1	0	0	0	0	0	0	0	1	8829	825	29	4		4	LGR5	12	71978259	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	6370	71978259	61873636	440	7903											
E2F7	144455	broad.mit.edu	37	chr12	77419217	77419217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataactctaggtctacaacGgaagccaggtggagcctgac	12	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77419217	T	T	77419217	1	4	8	0	1	0	0	0	0	0	0	0	4912	1131	39	1		1	E2F7	12	77419217	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	5440958	77419217	56432678	441	7904											
PPFIA2	8499	broad.mit.edu	37	chr12	82070623	82070623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgttagggattcgatatCctgaaaaggggagaggtgtt	14	5	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82070623	A	A	82070623	3	1	8	1	0	0	0	0	1	0	0	0	12406	869	30	3	3639	3	PPFIA2	12	82070623	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4651406	82070623	51781272	442	7905											
APAF1	317	broad.mit.edu	37	chr12	99059100	99059100	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttagccagatttgatctAtgttattttgacttaataaa	5	5	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99059100	T	T	99059100	1	4	8	0	1	0	0	0	0	0	0	0	757	464	16	5		5	APAF1	12	99059100	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	16988477	99059100	34792795	443	7906											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100451895	100451895	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagagtgaagctgcttctgGaagcaaatcttcagctttaa	10	7	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100451895	A	A	100451895	3	1	8	1	0	0	0	0	1	0	0	0	17095	1174	41	4	1266	4	UHRF1BP1L	12	100451895	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1392795	100451895	33400000	444	7907											
DEPDC4	120863	broad.mit.edu	37	chr12	100660779	100660779	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggcccggaagctcgttctGactgacaagtctacggaacc	12	12	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100660779	A	A	100660779	4	1	8	1	0	0	0	0	0	1	0	0	4481	1299	45	4	828	4	DEPDC4	12	100660779	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	208884	100660779	33191116	445	7908											
UTP20	27340	broad.mit.edu	37	chr12	101702085	101702085	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaactaagacatgatgtGgtacagactgctgtccctga	10	8	0	5			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101702085	A	A	101702085	2	1	8	1	0	0	0	0	0	0	0	1	17226	1335	47	4		4	UTP20	12	101702085	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	1041306	101702085	32149810	446	7909											
C12orf42	374470	broad.mit.edu	37	chr12	103700057	103700057	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcttacagaacacctggggActatgtactggcaagtatga	11	8	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103700057	T	T	103700057	3	4	8	1	0	0	0	0	1	0	0	0	1701	275	10	5	764	5	C12orf42	12	103700057	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	1997972	103700057	30151838	447	7910											
TXNRD1	7296	broad.mit.edu	37	chr12	104709747	104709747	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caatttttgtgatgcgtcgtCcattttcatgaagatagcaa	8	7	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104709747	T	T	104709747	1	4	8	0	1	0	0	0	0	0	0	0	16933	870	30	4		4	TXNRD1	12	104709747	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1009690	104709747	29142148	448	7911											
SLC41A2	84102	broad.mit.edu	37	chr12	105321916	105321916	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagatatatcttcatcttgTaacatggcagtggtttctga	8	7	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105321916	A	A	105321916	3	1	8	1	0	0	0	0	1	0	0	0	14744	1635	57	5	1371	5	SLC41A2	12	105321916	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	612169	105321916	28529979	449	7912											
CMKLR1	1240	broad.mit.edu	37	chr12	108685534	108685534	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaattggtggatgctaaaGaggttcttgccttgatcttc	11	6	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108685534	A	A	108685534	1	1	8	0	1	0	0	0	0	0	0	0	3611	957	33	4		4	CMKLR1	12	108685534	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	3363618	108685534	25166361	450	7913											
ISCU	23479	broad.mit.edu	37	chr12	108959109	108959109	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttctagattcaagtggatGaaaaggggaagattgtggat	13	2	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108959109	A	A	108959109	3	1	8	1	0	0	0	0	1	0	0	0	7922	1291	45	4	176	4	ISCU	12	108959109	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	273575	108959109	24892786	451	7914											
MYO1H	283446	broad.mit.edu	37	chr12	109853404	109853404	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactcctccactatgcaggaGaggtcacatactgcaccaag	9	13	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109853404	T	T	109853404	4	4	8	1	0	0	0	0	0	1	0	0	10169	943	33	3	1582	3	MYO1H	12	109853404	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	894295	109853404	23998491	452	7915											
C12orf51	283450	broad.mit.edu	37	chr12	112622801	112622801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactggcgcttgcccgacgaGgaggccttttcccgcttcat	12	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112622801	T	T	112622801	2	4	8	1	0	0	0	0	0	0	0	1	1709	987	35	2		2	C12orf51	12	112622801	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	2769397	112622801	21229094	453	7916											
RASAL1	8437	broad.mit.edu	37	chr12	113543702	113543702	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccagcttctaggagatgGgagaagagagcggtggacag	16	7	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113543702	A	A	113543702	1	1	8	0	1	0	0	0	0	0	0	0	13171	1247	43	4		4	RASAL1	12	113543702	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	920901	113543702	20308193	454	7917											
MED13L	23389	broad.mit.edu	37	chr12	116413452	116413452	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacattgtatttctggctcGcctcaccaaacgtctctccc	6	16	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116413452	A	A	116413452	3	1	8	1	0	0	0	0	1	0	0	0	9524	1087	38	4	1208	4	MED13L	12	116413452	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2869750	116413452	17438443	455	7918											
RFC5	5985	broad.mit.edu	37	chr12	118465911	118465911	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttaaggatggttaggacagGaggcttcattcttgaagcaa	13	5	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118465911	A	A	118465911	1	1	8	0	1	0	0	0	0	0	0	0	13356	1189	41	4		4	RFC5	12	118465911	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2052459	118465911	15385984	456	7919											
MLXIP	22877	broad.mit.edu	37	chr12	122625515	122625515	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcagttcagcatcatcatCaagccgctgtttgagtcgtt	9	11	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122625515	G	G	122625515	3	3	8	1	0	0	0	0	1	0	0	0	9729	816	29	4	2585	4	MLXIP	12	122625515	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4159604	122625515	11226380	457	7920											
IL31	386653	broad.mit.edu	37	chr12	122657100	122657100	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgtttgtttctggtgcAtcttgaaatatgagtttgtc	10	4	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122657100	T	T	122657100	3	4	8	1	0	0	0	0	1	0	0	0	7760	214	8	5	144	5	IL31	12	122657100	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	31585	122657100	11194795	458	7921											
RSRC2	65117	broad.mit.edu	37	chr12	123005861	123005861	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accttgacaacgtcttatatTcatacaaatctttctaccag	3	11	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123005861	G	G	123005861	1	3	8	0	1	0	0	0	0	0	0	0	13826	1798	62	5		5	RSRC2	12	123005861	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	348761	123005861	10846034	459	7922											
TMEM132B	114795	broad.mit.edu	37	chr12	126138085	126138085	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaatctgattataacaTaatgctttggtttcattttc	7	5	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126138085	C	C	126138085	1	2	8	0	1	0	0	0	0	0	0	0	16169	1421	49	5		5	TMEM132B	12	126138085	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	3132224	126138085	7713810	460	7923											
POLE	5426	broad.mit.edu	37	chr12	133237666	133237666	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacaccgaggattggaagatCttaatcagctgcagttcccc	9	11	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133237666	G	G	133237666	3	3	8	1	0	0	0	0	1	0	0	0	12291	912	32	4	4011	4	POLE	12	133237666	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	7099581	133237666	614229	461	7924											
ZNF268	10795	broad.mit.edu	37	chr12	133732053	133732053	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcattctcaccttaatactCtgtttagttacacaaacatt	3	10	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133732053	G	G	133732053	1	3	8	0	1	0	0	0	0	0	0	0	17933	928	32	4		4	ZNF268	12	133732053	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	494387	133732053	119842	462	7925											
TPTE2	93492	broad.mit.edu	37	chr13	20126703	20126703	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttataaccccctgaaattaAcacttacctgcttcattgtt	3	11	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20126703	G	G	20126703	1	3	8	0	1	0	0	0	0	0	0	0	16555	58	2	5		5	TPTE2	13	20126703	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08		20126703	95043175	463	7926											
SKA3	221150	broad.mit.edu	37	chr13	21729744	21729744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtagagacgaggtttcaCcatgttggtcaggatggtca	13	6	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21729744	A	A	21729744	1	1	8	0	1	0	0	0	0	0	0	0	14467	522	18	3		3	SKA3	13	21729744	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1603041	21729744	93440134	464	7927											
DGKH	160851	broad.mit.edu	37	chr13	42739585	42739585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatggtatgtagcagtagtGtaagtacgtatatttctggt	12	4	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42739585	T	T	42739585	1	4	8	0	1	0	0	0	0	0	0	0	4510	1392	48	3		3	DGKH	13	42739585	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	21009841	42739585	72430293	465	7928											
TNFSF11	8600	broad.mit.edu	37	chr13	43175189	43175189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatttcaatactgaaacCtatttttagtctgtcactga	5	10	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43175189	A	A	43175189	1	1	8	0	1	0	0	0	0	0	0	0	16425	696	24	2		2	TNFSF11	13	43175189	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	435604	43175189	71994689	466	7929											
CDADC1	81602	broad.mit.edu	37	chr13	49860298	49860298	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatatttaaaatcaatgtGctggaatgctatgtattaaa	7	3	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49860298	A	A	49860298	1	1	8	0	1	0	0	0	0	0	0	0	3083	1334	46	4		4	CDADC1	13	49860298	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6685109	49860298	65309580	467	7930											
KLHL1	57626	broad.mit.edu	37	chr13	70535587	70535587	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaacaagcctgaaagagtCacaggttctaatttaggtcg	10	8	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70535587	A	A	70535587	1	1	8	0	1	0	0	0	0	0	0	0	8436	841	29	3		3	KLHL1	13	70535587	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	20675289	70535587	44634291	468	7931											
DACH1	1602	broad.mit.edu	37	chr13	72147228	72147228	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaagttttctaataatGgtagtcaaagaaacaatatt	6	4	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72147228	T	T	72147228	1	4	8	0	1	0	0	0	0	0	0	0	4253	1363	47	2		2	DACH1	13	72147228	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1611641	72147228	43022650	469	7932											
DIS3	22894	broad.mit.edu	37	chr13	73346338	73346338	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctcgacaatgtagagcatCgtctatatcagtacatcctg	7	10	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73346338	T	T	73346338	3	4	8	1	0	0	0	0	1	0	0	0	4575	884	31	4	1462	4	DIS3	13	73346338	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1199110	73346338	41823540	470	7933											
TMTC4	84899	broad.mit.edu	37	chr13	101286989	101286989	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgcgcgacaggaaatgttCttattcagcccaagaactta	8	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101286989	G	G	101286989	1	3	8	0	1	0	0	0	0	0	0	0	16386	928	32	4		4	TMTC4	13	101286989	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	27940651	101286989	13882889	471	7934											
TPP2	7174	broad.mit.edu	37	chr13	103297230	103297230	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttatttttagtaaagtttGagaaagtaatttgagaaatc	8	2	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103297230	C	C	103297230	1	2	8	0	1	0	0	0	0	0	0	0	16536	1305	45	4		4	TPP2	13	103297230	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2010241	103297230	11872648	472	7935											
COL4A2	1284	broad.mit.edu	37	chr13	111153944	111153944	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaccacaggtgatggtgtGgagggaaaatagtagatttg	14	5	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111153944	A	A	111153944	1	1	8	0	1	0	0	0	0	0	0	0	3722	1363	47	4		4	COL4A2	13	111153944	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	7856714	111153944	4015934	473	7936											
RASA3	22821	broad.mit.edu	37	chr13	114782654	114782654	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcccagtgcagtgccctcTgttgggggaaatcctcccca	11	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114782654	A	A	114782654	1	1	8	0	1	0	0	0	0	0	0	0	13170	1595	55	5		5	RASA3	13	114782654	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	3628710	114782654	387224	474	7937											
OR4K14	122740	broad.mit.edu	37	chr14	20483365	20483365	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtccattgcctcaggtttCagactttgtttgtaatctaa	9	8	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20483365	A	A	20483365	1	1	8	0	1	0	0	0	0	0	0	0	11163	841	29	3		3	OR4K14	14	20483365	5'Flank	SNP	C	TCGA-05-4395-01A-01D-1265-08		20483365	86866175	475	7938											
OR11H6	122748	broad.mit.edu	37	chr14	20692096	20692096	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaggcggctccacacaccCatgtacatccttctgggaaa	9	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20692096	A	A	20692096	2	1	8	1	0	0	0	0	0	0	0	1	11023	581	21	2		2	OR11H6	14	20692096	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	208731	20692096	86657444	476	7939											
TEP1	7011	broad.mit.edu	37	chr14	20871686	20871686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcaatagccctgaaggtGcatctctaccaaaaaggaag	9	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20871686	T	T	20871686	1	4	8	0	1	0	0	0	0	0	0	0	15881	1334	46	3		3	TEP1	14	20871686	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	179590	20871686	86477854	477	7940											
RNASE12	493901	broad.mit.edu	37	chr14	21058864	21058864	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacagaagcaccaagaaaaTtatcaccattattatcatca	4	9	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21058864	C	C	21058864	3	2	8	1	0	0	0	0	1	0	0	0	13513	1493	52	5	428	5	RNASE12	14	21058864	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	187178	21058864	86290676	478	7941											
EDDM3B	64184	broad.mit.edu	37	chr14	21238647	21238647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagaattccaaaaataGctacacagagagcaggagct	10	9	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21238647	T	T	21238647	3	4	8	1	0	0	0	0	1	0	0	0	4950	971	34	3	340	3	EDDM3B	14	21238647	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	179783	21238647	86110893	479	7942											
RAB2B	84932	broad.mit.edu	37	chr14	21930621	21930621	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcagtctcaagttcaggtaGagaaatgagggaaagagaat	12	4	3	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21930621	A	A	21930621	1	1	8	0	1	0	0	0	0	0	0	0	13026	957	33	4		4	RAB2B	14	21930621	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	691974	21930621	85418919	480	7943											
OXA1L	5018	broad.mit.edu	37	chr14	23240211	23240211	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagcttctgagtcccttctCtgtgttctcacccaggcagt	8	14	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23240211	G	G	23240211	1	3	8	0	1	0	0	0	0	0	0	0	11422	928	32	4		4	OXA1L	14	23240211	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1309590	23240211	84109329	481	7944											
LRP10	26020	broad.mit.edu	37	chr14	23344228	23344228	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaagccagcagcagtcaaGagtatctcatgtcctgctct	9	11	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23344228	A	A	23344228	1	1	8	0	1	0	0	0	0	0	0	0	9039	957	33	4		4	LRP10	14	23344228	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	104017	23344228	84005312	482	7945											
MYH7	4625	broad.mit.edu	37	chr14	23883231	23883231	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccgcctcctcggcctgGcgcttgtaggccttgacctt	10	17	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23883231	C	C	23883231	2	2	8	1	0	0	0	0	0	0	0	1	10133	1190	42	4		4	MYH7	14	23883231	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	539003	23883231	83466309	483	7946											
DHRS4	10901	broad.mit.edu	37	chr14	24424420	24424420	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggagcggctggtggccaCggtgagctgcagggaaatgg	20	9	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24424420	T	T	24424420	3	4	8	1	0	0	0	0	1	0	0	0	4532	550	19	4	311	4	DHRS4	14	24424420	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	541189	24424420	82925120	484	7947											
RABGGTA	5875	broad.mit.edu	37	chr14	24735807	24735807	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagctcagggtgacgggtCcacagagcacagaggggctc	17	10	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24735807	A	A	24735807	1	1	8	0	1	0	0	0	0	0	0	0	13075	870	30	3		3	RABGGTA	14	24735807	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	311387	24735807	82613733	485	7948											
NYNRIN	57523	broad.mit.edu	37	chr14	24884150	24884150	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagcttctccctacctGggcatcccctgggatggaaa	13	13	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24884150	T	T	24884150	2	4	8	1	0	0	0	0	0	0	0	1	10891	1335	47	2		2	NYNRIN	14	24884150	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	148343	24884150	82465390	486	7949											
GZMB	3002	broad.mit.edu	37	chr14	25100341	25100341	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactttggtgcaggctcgtGgaggcatgccattgtttcgt	14	8	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25100341	A	A	25100341	3	1	8	1	0	0	0	0	1	0	0	0	6981	1348	47	4	67	4	GZMB	14	25100341	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	216191	25100341	82249199	487	7950											
CTAGE5	4253	broad.mit.edu	37	chr14	39769164	39769164	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtacatgcagaacaagttCtaaatgataaagaaagtcac	7	6	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39769164	G	G	39769164	3	3	8	1	0	0	0	0	1	0	0	0	4028	912	32	4	834	4	CTAGE5	14	39769164	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	14668823	39769164	67580376	488	7951											
CTAGE5	4253	broad.mit.edu	37	chr14	39796151	39796151	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgataggttaaccgatcctCatagggctccctctgacact	9	12	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39796151	T	T	39796151	3	4	8	1	0	0	0	0	1	0	0	0	4028	826	29	4	1865	4	CTAGE5	14	39796151	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	26987	39796151	67553389	489	7952											
LRFN5	145581	broad.mit.edu	37	chr14	42356779	42356779	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggagaccctgagcctgcAattcactggatttctcctga	11	11	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42356779	T	T	42356779	2	4	8	1	0	0	0	0	0	0	0	1	9028	117	5	5		5	LRFN5	14	42356779	Silent	SNP	A	TCGA-05-4395-01A-01D-1265-08	2560628	42356779	64992761	490	7953											
TRIM9	114088	broad.mit.edu	37	chr14	51561379	51561379	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggacgccgttgggggacttCtggcacggggtagtgggggc	21	9	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51561379	T	T	51561379	2	4	8	1	0	0	0	0	0	0	0	1	16674	912	32	4		4	TRIM9	14	51561379	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	9204600	51561379	55788161	491	7954											
TXNDC16	57544	broad.mit.edu	37	chr14	52936818	52936818	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatacaagatgaggtcttTatataattccccacttaaat	5	7	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52936818	A	A	52936818	4	1	8	1	0	0	0	0	0	1	0	0	16921	1763	61	5	946	5	TXNDC16	14	52936818	Nonsense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	1375439	52936818	54412722	492	7955											
PSMC6	5706	broad.mit.edu	37	chr14	53177706	53177706	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtttataatctgatatttGtgttctctctggagggtaaa	10	4	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53177706	A	A	53177706	1	1	8	0	1	0	0	0	0	0	0	0	12797	1392	48	4		4	PSMC6	14	53177706	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	240888	53177706	54171834	493	7956											
DDHD1	80821	broad.mit.edu	37	chr14	53570350	53570350	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaccactctaaactttatCaacaacttacttggtttgta	3	10	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53570350	G	G	53570350	1	3	8	0	1	0	0	0	0	0	0	0	4359	841	29	4		4	DDHD1	14	53570350	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	392644	53570350	53779190	494	7957											
WDHD1	11169	broad.mit.edu	37	chr14	55429914	55429914	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccaaaaagggggggggggGggagatcaaataacatcaag	16	5	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55429914	A	A	55429914	1	1	8	0	1	0	0	0	0	0	0	0	17398	1247	43	4		4	WDHD1	14	55429914	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1859564	55429914	51919626	495	7958											
PPM1A	5494	broad.mit.edu	37	chr14	60759220	60759220	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaactgctcatctagccatgGagtttaccttcacctccaaa	5	13	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60759220	T	T	60759220	1	4	8	0	1	0	0	0	0	0	0	0	12436	1189	41	3		3	PPM1A	14	60759220	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	5329306	60759220	46590320	496	7959											
C14orf39	317761	broad.mit.edu	37	chr14	60938435	60938435	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaacttctttatactgacAtatataatcatgatacattt	2	7	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60938435	G	G	60938435	3	3	8	1	0	0	0	0	1	0	0	0	1785	217	8	5	1469	5	C14orf39	14	60938435	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	179215	60938435	46411105	497	7960											
FUT8	2530	broad.mit.edu	37	chr14	66082912	66082912	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttggaaatgctacaactctCtattctttgactacaggtct	7	9	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66082912	G	G	66082912	1	3	8	0	1	0	0	0	0	0	0	0	6170	928	32	4		4	FUT8	14	66082912	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5144477	66082912	41266628	498	7961											
ZFYVE26	23503	broad.mit.edu	37	chr14	68273500	68273500	+	Intron	DEL	A	-	-													gtttgctcttttaaaaacttAggctgggttttccatacttt							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68273500	-	-	68273500	6	5	8	0	1	1	0	1	0	0	0	0	17794	435	15	0		0	ZFYVE26	14	68273500	Intron	DEL	A	TCGA-05-4395-01A-01D-1265-08	2190588	68273500	39076040	499	7962											
SLC39A9	55334	broad.mit.edu	37	chr14	69908952	69908952	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcatgttgctggtggaccaGattggtaactcccatgtgca	11	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69908952	A	A	69908952	2	1	8	1	0	0	0	0	0	0	0	1	14739	933	33	4		4	SLC39A9	14	69908952	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	1635452	69908952	37440588	500	7963											
KIAA0317	9870	broad.mit.edu	37	chr14	75142577	75142577	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctacagttggtagcattaTaaagataagcctcaaagtaa	8	6	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75142577	C	C	75142577	3	2	8	1	0	0	0	0	1	0	0	0	8237	1406	49	5	1618	5	KIAA0317	14	75142577	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	5233625	75142577	32206963	501	7964											
TSHR	7253	broad.mit.edu	37	chr14	81610058	81610058	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggtttgctgcttccttctCgccctgcttcctttggtggg	12	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81610058	T	T	81610058	2	4	8	1	0	0	0	0	0	0	0	1	16747	871	31	4		4	TSHR	14	81610058	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	6467481	81610058	25739482	502	7965											
SETD3	84193	broad.mit.edu	37	chr14	99879343	99879343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcagagccagggtcacgCgggaaccatcctctgtggga	14	11	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99879343	A	A	99879343	3	1	8	1	0	0	0	0	1	0	0	0	14245	768	27	3	1060	3	SETD3	14	99879343	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	18269285	99879343	7470197	503	7966											
ZFYVE21	79038	broad.mit.edu	37	chr14	104192963	104192963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattggctctggagcctgggCacaggcggccagtccaccgt	14	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104192963	T	T	104192963	1	4	8	0	1	0	0	0	0	0	0	0	17793	725	25	4		4	ZFYVE21	14	104192963	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	4313620	104192963	3156577	504	7967											
AHNAK2	113146	broad.mit.edu	37	chr14	105411354	105411354	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accccgaaggagggcatcttGaacttgggcattttgaactt	11	9	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105411354	C	C	105411354	3	2	8	1	0	0	0	0	1	0	0	0	415	1281	45	4	6957	4	AHNAK2	14	105411354	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1218391	105411354	1938186	505	7968											
C15orf2	23742	broad.mit.edu	37	chr15	24922567	24922567	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaagggagtccccaatatCtatgtgtgtggattcccctc	9	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922567	A	A	24922567	3	1	8	1	0	0	0	0	1	0	0	0	1797	913	32	3	1555	3	C15orf2	15	24922567	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08		24922567	77608825	506	7969											
OCA2	4948	broad.mit.edu	37	chr15	28267587	28267587	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcacaaccgtctgcaagtgTctccttgtgtttcagatctc	8	12	5	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28267587	A	A	28267587	1	1	8	0	1	0	0	0	0	0	0	0	10910	1682	58	5		5	OCA2	15	28267587	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	3345020	28267587	74263805	507	7970											
ATPBD4	89978	broad.mit.edu	37	chr15	35814402	35814402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaaacaatcgcctggctGcccactttcaaatgcatgtg	8	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35814402	T	T	35814402	1	4	8	0	1	0	0	0	0	0	0	0	1206	1306	46	3		3	ATPBD4	15	35814402	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	7546815	35814402	66716990	508	7971											
DLL4	54567	broad.mit.edu	37	chr15	41222082	41222082	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcttccagctgcagctgcAggagttcatcaacgagcgcg	12	13	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41222082	G	G	41222082	3	3	8	1	0	0	0	0	1	0	0	0	4608	188	7	5	110	5	DLL4	15	41222082	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	5407680	41222082	61309310	509	7972											
DUOX2	50506	broad.mit.edu	37	chr15	45394042	45394042	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagctgcgtgaagcggagctCgctgtcatggtcccgcagca	15	12	1	1	rs148333059		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45394042	A	A	45394042	4	1	8	1	0	0	0	0	0	1	0	0	4841	893	31	3	1902	3	DUOX2	15	45394042	Nonsense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4171960	45394042	57137350	510	7973											
BNIP2	663	broad.mit.edu	37	chr15	59961004	59961004	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagttataaaatataataCataaagaatgagtattgaaa	5	3	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59961004	T	T	59961004	1	4	8	0	1	0	0	0	0	0	0	0	1483	493	17	4		4	BNIP2	15	59961004	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	14566962	59961004	42570388	511	7974											
TLN2	83660	broad.mit.edu	37	chr15	63054226	63054226	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatgtagagaacaatcttActgcctaggtttggggcgat	11	6	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63054226	G	G	63054226	1	3	8	0	1	0	0	0	0	0	0	0	16071	406	14	5		5	TLN2	15	63054226	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	3093222	63054226	39477166	512	7975											
IGDCC3	9543	broad.mit.edu	37	chr15	65622919	65622919	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggttgtaggaggagacggtTccaggcagcaggatggggcc	19	7	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65622919	C	C	65622919	2	2	8	1	0	0	0	0	0	0	0	1	7638	1770	62	5		5	IGDCC3	15	65622919	Silent	SNP	T	TCGA-05-4395-01A-01D-1265-08	2568693	65622919	36908473	513	7976											
MAN2C1	4123	broad.mit.edu	37	chr15	75651770	75651770	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcactgtcaccagggctgGgggtgaggcctgggcatcag	19	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75651770	A	A	75651770	1	1	8	0	1	0	0	0	0	0	0	0	9310	1247	43	4		4	MAN2C1	15	75651770	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	10028851	75651770	26879622	514	7977											
MAN2C1	4123	broad.mit.edu	37	chr15	75654158	75654158	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagtcgagcgccagcccCactcgcccacagcctggtgt	10	18	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75654158	A	A	75654158	1	1	8	0	1	0	0	0	0	0	0	0	9310	609	21	2		2	MAN2C1	15	75654158	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2388	75654158	26877234	515	7978											
TMED3	23423	broad.mit.edu	37	chr15	79606204	79606204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgacagcttcacgtaccggGctgaagtcaagggcgtttat	12	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79606204	T	T	79606204	3	4	8	1	0	0	0	0	1	0	0	0	16128	1203	42	3	280	3	TMED3	15	79606204	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	3952046	79606204	22925188	516	7979											
EFTUD1	79631	broad.mit.edu	37	chr15	82456214	82456214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggatgttttggttcaacaGcaactctcacaataggagtg	10	7	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456214	T	T	82456214	3	4	8	1	0	0	0	0	1	0	0	0	5000	971	34	3	1520	3	EFTUD1	15	82456214	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2850010	82456214	20075178	517	7980											
ALPK3	57538	broad.mit.edu	37	chr15	85401093	85401093	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacctcccgccgcctcaccGgcctcctggaccgtgaggtg	12	18	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85401093	A	A	85401093	3	1	8	1	0	0	0	0	1	0	0	0	546	1116	39	4	3752	4	ALPK3	15	85401093	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	2944879	85401093	17130299	518	7981											
SLC28A1	9154	broad.mit.edu	37	chr15	85487954	85487954	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactttctggctagcccgggGgccctgccccacccaccact	10	19	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85487954	A	A	85487954	1	1	8	0	1	0	0	0	0	0	0	0	14645	1247	43	4		4	SLC28A1	15	85487954	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	86861	85487954	17043438	519	7982											
AGBL1	123624	broad.mit.edu	37	chr15	87531207	87531207	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgtaccactcatttatctGaacattacagattaaaatca	3	9	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87531207	A	A	87531207	1	1	8	0	1	0	0	0	0	0	0	0	375	1305	45	4		4	AGBL1	15	87531207	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2043253	87531207	15000185	520	7983											
NTRK3	4916	broad.mit.edu	37	chr15	88678610	88678610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcaggctcctccaggCtcaccacacgtgggggatct	12	15	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88678610	A	A	88678610	3	1	8	1	0	0	0	0	1	0	0	0	10803	797	28	3	1899	3	NTRK3	15	88678610	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1147403	88678610	13852782	521	7984											
ACAN	176	broad.mit.edu	37	chr15	89386649	89386649	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcagccaatgagtgccGgcggctgggtgcccggctgg	19	11	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89386649	A	A	89386649	3	1	8	1	0	0	0	0	1	0	0	0	117	1116	39	4	839	4	ACAN	15	89386649	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	708039	89386649	13144743	522	7985											
SV2B	9899	broad.mit.edu	37	chr15	91827441	91827441	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggatagaattggaaggctCaagatgattggtgagttgcc	14	4	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91827441	G	G	91827441	2	3	8	1	0	0	0	0	0	0	0	1	15536	813	29	4		4	SV2B	15	91827441	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	2440792	91827441	10703951	523	7986											
ST8SIA2	8128	broad.mit.edu	37	chr15	92973239	92973239	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagagggctttgcaaagatGagctgggtttataaataatg	13	3	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92973239	C	C	92973239	1	2	8	0	1	0	0	0	0	0	0	0	15350	1305	45	4		4	ST8SIA2	15	92973239	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1145798	92973239	9558153	524	7987											
ABCA3	21	broad.mit.edu	37	chr16	2347904	2347904	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacttcttcagggcacttctGacgtgacaggcccttcagct	10	13	4	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2347904	A	A	2347904	4	1	8	1	0	0	0	0	0	1	0	0	33	1299	45	4	3271	4	ABCA3	16	2347904	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08		2347904	88006849	525	7988											
CORO7	79585	broad.mit.edu	37	chr16	4408121	4408121	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgcagagggagaaacGggctgtcctgagacattgac	13	9	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4408121	A	A	4408121	1	1	8	0	1	0	0	0	0	0	0	0	3791	1131	39	4		4	CORO7	16	4408121	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	2060217	4408121	85946632	526	7989											
ZNF500	26048	broad.mit.edu	37	chr16	4815539	4815539	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagggccccatttcctcaCctgagggtcaaaatgccccc	9	16	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4815539	G	G	4815539	1	3	8	0	1	0	0	0	0	0	0	0	18075	522	18	4		4	ZNF500	16	4815539	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	407418	4815539	85539214	527	7990											
A2BP1	54715	broad.mit.edu	37	chr16	7703845	7703845	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccgtatccagcagccacCgccgcggccgcctaccgagg	11	19	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7703845	A	A	7703845	2	1	8	1	0	0	0	0	0	0	0	1	3	639	23	1		1	A2BP1	16	7703845	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	2888306	7703845	82650908	528	7991											
A2BP1	54715	broad.mit.edu	37	chr16	7715154	7715154	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacttgtggcagacatcacTggctgtttagtggggtggaa	15	6	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7715154	G	G	7715154	1	3	8	0	1	0	0	0	0	0	0	0	3	1595	55	5		5	A2BP1	16	7715154	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	11309	7715154	82639599	529	7992											
USP7	7874	broad.mit.edu	37	chr16	8993022	8993022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattggatctgtgttgagCctctgtgcaactgtctttgc	10	9	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8993022	A	A	8993022	3	1	8	1	0	0	0	0	1	0	0	0	17215	738	26	3	857	3	USP7	16	8993022	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1277868	8993022	81361731	530	7993											
C16orf45	89927	broad.mit.edu	37	chr16	15661933	15661933	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaccatttgcaacttcaCcttgtgctaaacaggtgctt	8	10	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15661933	T	T	15661933	1	4	8	0	1	0	0	0	0	0	0	0	1828	522	18	4		4	C16orf45	16	15661933	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	6668911	15661933	74692820	531	7994											
PDILT	204474	broad.mit.edu	37	chr16	20373709	20373709	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgttttcagccatgtgcgTcccaagagcccctcacttgt	8	13	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20373709	A	A	20373709	1	1	8	0	1	0	0	0	0	0	0	0	11768	1682	58	5		5	PDILT	16	20373709	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	4711776	20373709	69981044	532	7995											
PDILT	204474	broad.mit.edu	37	chr16	20380967	20380967	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccggaagtacttgaagacAcgtccatttctgggttcgtc	10	11	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20380967	T	T	20380967	2	4	8	1	0	0	0	0	0	0	0	1	11768	146	6	5		5	PDILT	16	20380967	Silent	SNP	A	TCGA-05-4395-01A-01D-1265-08	7258	20380967	69973786	533	7996											
ACSM5	54988	broad.mit.edu	37	chr16	20430688	20430688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcagtgccgaatgcccctCcctccagaccaagctgctgg	9	17	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20430688	A	A	20430688	3	1	8	1	0	0	0	0	1	0	0	0	187	855	30	3	564	3	ACSM5	16	20430688	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	49721	20430688	69924065	534	7997											
ACSM2A	123876	broad.mit.edu	37	chr16	20476767	20476767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcaccaacttggcaatcCcaagacttggaatttatcct	6	11	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20476767	A	A	20476767	1	1	8	0	1	0	0	0	0	0	0	0	183	638	22	2		2	ACSM2A	16	20476767	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	46079	20476767	69877986	535	7998											
ACSM2B	348158	broad.mit.edu	37	chr16	20551901	20551901	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattagaaggctgtcctcctCctgaagaagataaatataac	7	8	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20551901	A	A	20551901	1	1	8	0	1	0	0	0	0	0	0	0	184	870	30	3		3	ACSM2B	16	20551901	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	75134	20551901	69802852	536	7999											
ACSM3	6296	broad.mit.edu	37	chr16	20788795	20788795	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatcaccaatgatgttttAgccccagcagtagacgctgt	8	10	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20788795	G	G	20788795	2	3	8	1	0	0	0	0	0	0	0	1	185	417	15	5		5	ACSM3	16	20788795	Silent	SNP	A	TCGA-05-4395-01A-01D-1265-08	236894	20788795	69565958	537	8000											
CD19	930	broad.mit.edu	37	chr16	28948703	28948703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctctcccagggtaaggCtgccctcccccgtggccccc	10	21	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28948703	T	T	28948703	1	4	8	0	1	0	0	0	0	0	0	0	3003	812	28	4		4	CD19	16	28948703	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	8159908	28948703	61406050	538	8001											
SEPT1	1731	broad.mit.edu	37	chr16	30391340	30391340	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtggatctcctcttccttCaactgatcccggatctcagg	8	13	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30391340	T	T	30391340	2	4	8	1	0	0	0	0	0	0	0	1	14172	825	29	4		4	SEPT1	16	30391340	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	1442637	30391340	59963413	539	8002											
NETO2	81831	broad.mit.edu	37	chr16	47163342	47163342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattcttctctttcccccaCcactttccaaacgattgctc	2	17	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47163342	A	A	47163342	1	1	8	0	1	0	0	0	0	0	0	0	10435	522	18	3		3	NETO2	16	47163342	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	16772002	47163342	43191411	540	8003											
ITFG1	81533	broad.mit.edu	37	chr16	47488232	47488232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccatcatgtatttagacCtctttggtctaaaaaagagt	6	8	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47488232	A	A	47488232	1	1	8	0	1	0	0	0	0	0	0	0	7939	696	24	2		2	ITFG1	16	47488232	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	324890	47488232	42866521	541	8004											
CHD9	80205	broad.mit.edu	37	chr16	53276709	53276709	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaggaataaaaaatatgcAattaaaatattccagcaaat	5	5	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53276709	T	T	53276709	1	4	8	0	1	0	0	0	0	0	0	0	3363	145	5	5		5	CHD9	16	53276709	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	5788477	53276709	37078044	542	8005											
BBS2	583	broad.mit.edu	37	chr16	56535181	56535193	+	Intron	DEL	AAGACTCTGTCTC	-	-													gcagtgagccaagacagaggAagactctgtctcaaaaaaaa					rs150693766		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56535193	-	-	56535181	6	5	8	0	1	1	0	1	0	0	0	0	1343	261	9	0		0	BBS2	16	56535181	Intron	DEL	AAGACTCTGTCTC	TCGA-05-4395-01A-01D-1265-08	3258472	56535181	33819572	543	8006											
NLRC5	84166	broad.mit.edu	37	chr16	57113062	57113062	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtaagtaggggctgccCagcccaggcacggggacagt	16	11	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57113062	T	T	57113062	1	4	8	0	1	0	0	0	0	0	0	0	10565	609	21	4		4	NLRC5	16	57113062	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	577881	57113062	33241691	544	8007											
PDP2	57546	broad.mit.edu	37	chr16	66918316	66918316	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaatggaggctcttttcCcgggtgccacccaccctaaa	8	13	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66918316	T	T	66918316	2	4	8	1	0	0	0	0	0	0	0	1	11780	610	22	4		4	PDP2	16	66918316	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	9805254	66918316	23436437	545	8008											
CTCF	10664	broad.mit.edu	37	chr16	67645894	67645894	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagctttgcagttacacGtgtccacggcgttcaaattt	10	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67645894	C	C	67645894	2	2	8	1	0	0	0	0	0	0	0	1	4034	1132	40	4		4	CTCF	16	67645894	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	727578	67645894	22708859	546	8009											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67858717	67858717	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatgatgaccaagtcccCgaattcctgccaactccacg	8	14	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67858717	T	T	67858717	1	4	8	0	1	0	0	0	0	0	0	0	16757	667	23	4		4	TSNAXIP1	16	67858717	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	212823	67858717	22496036	547	8010											
EDC4	23644	broad.mit.edu	37	chr16	67910950	67910950	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttccaacatcaggccactCaggccttaggggtacaatgg	11	11	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67910950	T	T	67910950	1	4	8	0	1	0	0	0	0	0	0	0	4948	841	29	4		4	EDC4	16	67910950	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	52233	67910950	22443803	548	8011			1	3		3	3	371	C		3.34377e-05
EDC4	23644	broad.mit.edu	37	chr16	67911274	67911274	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgaggcaggcaacctgttCgtgtggcgcttggctctggt	16	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67911274	T	T	67911274	2	4	8	1	0	0	0	0	0	0	0	1	4948	883	31	4		4	EDC4	16	67911274	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	324	67911274	22443479	549	8012			1	3		3	3	371	C		3.34377e-05
EDC4	23644	broad.mit.edu	37	chr16	67911320	67911320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaattcagtatccattcCttcctgtgggtggtgggact	11	9	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67911320	A	A	67911320	1	1	8	0	1	0	0	0	0	0	0	0	4948	696	24	2		2	EDC4	16	67911320	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	46	67911320	22443433	550	8013			1	3		3	3	371	C		3.34377e-05
SF3B3	23450	broad.mit.edu	37	chr16	70573038	70573039	+	Missense_Mutation	DNP	CT	AA	AA													ccggctcaaatattttgataCtgtacccgttgctgctgcca							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70573039	AA	AA	70573038	3	1	8	1	0	0	0	0	1	0	0	0	14265	565	20	3	1021	3	SF3B3	16	70573038	Missense_Mutation	DNP	CT	TCGA-05-4395-01A-01D-1265-08	2661718	70573038	19781715	551	8014											
HYDIN	54768	broad.mit.edu	37	chr16	70995855	70995855	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatcaaaacactaaaatgctCggttactttggaaaatgatt	6	6	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70995855	T	T	70995855	1	4	8	0	1	0	0	0	0	0	0	0	7537	899	31	4		4	HYDIN	16	70995855	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	422817	70995855	19358898	552	8015											
WDR59	79726	broad.mit.edu	37	chr16	74943862	74943862	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagaggaacacatttctctGataggttttttttttttttt	7	4	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74943862	C	C	74943862	1	2	8	0	1	0	0	0	0	0	0	0	17435	1305	45	4		4	WDR59	16	74943862	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3948007	74943862	15410891	553	8016											
CHST5	23563	broad.mit.edu	37	chr16	75563008	75563008	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcgcctcctgggcctgGcgaccacagttcggggcctg	15	15	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75563008	A	A	75563008	1	1	8	0	1	0	0	0	0	0	0	0	3438	1218	42	4		4	CHST5	16	75563008	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	619146	75563008	14791745	554	8017											
CHST5	23563	broad.mit.edu	37	chr16	75563474	75563474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcggcgatgcgcacgtggCtgcggcacacctcgcgaatc	13	16	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75563474	A	A	75563474	3	1	8	1	0	0	0	0	1	0	0	0	3438	797	28	3	430	3	CHST5	16	75563474	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	466	75563474	14791279	555	8018											
ADAMTS18	170692	broad.mit.edu	37	chr16	77354871	77354871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgccaccatcactagtgtGtccagtgaactagtaaaagg	9	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77354871	T	T	77354871	1	4	8	0	1	0	0	0	0	0	0	0	263	1392	48	3		3	ADAMTS18	16	77354871	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1791397	77354871	12999882	556	8019											
ADAMTS18	170692	broad.mit.edu	37	chr16	77401460	77401460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggataattccggccagagCcggggtagccacggtaccgc	14	13	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77401460	A	A	77401460	3	1	8	1	0	0	0	0	1	0	0	0	263	739	26	3	3089	3	ADAMTS18	16	77401460	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	46589	77401460	12953293	557	8020											
CENPN	55839	broad.mit.edu	37	chr16	81056525	81056525	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataccactcattagtcactgGagtctgtgttgtagatctca	8	9	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81056525	T	T	81056525	1	4	8	0	1	0	0	0	0	0	0	0	3268	1189	41	3		3	CENPN	16	81056525	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	3655065	81056525	9298228	558	8021											
CYBA	1535	broad.mit.edu	37	chr16	88713266	88713266	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgggggagggaggaaggcGagacggcgcggctgggcctc	22	10	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88713266	A	A	88713266	1	1	8	0	1	0	0	0	0	0	0	0	4164	1073	37	4		4	CYBA	16	88713266	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	7656741	88713266	1641487	559	8022											
SRR	63826	broad.mit.edu	37	chr17	2224940	2224940	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctggaggattccctgcttCaagcagaggatttactttac	9	9	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2224940	G	G	2224940	1	3	8	0	1	0	0	0	0	0	0	0	15284	841	29	4		4	SRR	17	2224940	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08		2224940	78970270	560	8023											
DLG4	1742	broad.mit.edu	37	chr17	7111464	7111464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggacaagttcctctccGccacgtgcaccagctcgggg	14	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7111464	T	T	7111464	1	4	8	0	1	0	0	0	0	0	0	0	4597	1102	38	3		3	DLG4	17	7111464	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4886524	7111464	74083746	561	8024											
TP53	7157	broad.mit.edu	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578403	T	T	7578403	3	4	8	1	0	0	0	0	1	0	0	0	16505	710	25	4	771	4	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	466939	7578403	73616807	562	8025											
MYH1	4619	broad.mit.edu	37	chr17	10419599	10419599	+	Nonsense_Mutation	SNP	C	A	A													agtcatcatggccatgtcctCgatcttgtcatatttgggag					rs149095511		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10419599	A	A	10419599	4	1	8	1	0	0	0	0	0	1	0	0	10123	893	31	3	5702	3	MYH1	17	10419599	Nonsense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	2841196	10419599	70775611	563	8026	28	2									
MYH1	4619	broad.mit.edu	37	chr17	10419608	10419608	+	Missense_Mutation	SNP	C	A	A													ggccatgtcctcgatcttgtCatatttgggagggttcatgg							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10419608	A	A	10419608	3	1	8	1	0	0	0	0	1	0	0	0	10123	826	29	3	5711	3	MYH1	17	10419608	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	9	10419608	70775602	564	8027	28	2									
DNAH9	1770	broad.mit.edu	37	chr17	11725838	11725838	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgtgaactgcacagccatCcactggttccacgagtggcc	10	13	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11725838	A	A	11725838	2	1	8	1	0	0	0	0	0	0	0	1	4648	845	30	3		3	DNAH9	17	11725838	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	1306230	11725838	69469372	565	8028											
TEKT3	64518	broad.mit.edu	37	chr17	15211833	15211833	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcccacactgaaactcttcTgcattcaacatctccccatt	2	16	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15211833	G	G	15211833	1	3	8	0	1	0	0	0	0	0	0	0	15876	1595	55	5		5	TEKT3	17	15211833	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	3485995	15211833	65983377	566	8029											
ZNF624	57547	broad.mit.edu	37	chr17	16527059	16527059	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtttctctccagtttgaaTtctctggtgctgattaagac	10	8	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16527059	C	C	16527059	3	2	8	1	0	0	0	0	1	0	0	0	18175	1493	52	5	1460	5	ZNF624	17	16527059	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	1315226	16527059	64668151	567	8030											
FLCN	201163	broad.mit.edu	37	chr17	17125724	17125724	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagcaaacacggctaaGgactgttctcccaaatccat	7	13	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17125724	A	A	17125724	1	1	8	0	1	0	0	0	0	0	0	0	5978	1015	35	4		4	FLCN	17	17125724	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	598665	17125724	64069486	568	8031											
DRG2	1819	broad.mit.edu	37	chr17	18007331	18007331	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctagacacacctcagctCttttcccttctcagcactgg	6	15	4	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18007331	A	A	18007331	1	1	8	0	1	0	0	0	0	0	0	0	4802	928	32	3		3	DRG2	17	18007331	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	881607	18007331	63187879	569	8032											
MYO15A	51168	broad.mit.edu	37	chr17	18023155	18023155	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactacctggatccctatgcGccgtacgacgcgccataccc	8	17	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18023155	A	A	18023155	2	1	8	1	0	0	0	0	0	0	0	1	10157	1074	38	4		4	MYO15A	17	18023155	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	15824	18023155	63172055	570	8033											
EPN2	22905	broad.mit.edu	37	chr17	19232056	19232056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctccattgacccatggGgggtgcccactggagccacc	12	16	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19232056	T	T	19232056	3	4	8	1	0	0	0	0	1	0	0	0	5228	1232	43	2	1202	2	EPN2	17	19232056	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1208901	19232056	61963154	571	8034											
GIT1	28964	broad.mit.edu	37	chr17	27905964	27905964	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttcaggcctgctgccccGgcaggcaccatatacctctg	9	17	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27905964	A	A	27905964	1	1	8	0	1	0	0	0	0	0	0	0	6460	1131	39	4		4	GIT1	17	27905964	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	8673908	27905964	53289246	572	8035											
GRB7	2886	broad.mit.edu	37	chr17	37901389	37901389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataggaagtgcccatcgaaGgcagaaacacagccctggtc	11	11	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37901389	T	T	37901389	1	4	8	0	1	0	0	0	0	0	0	0	6825	1015	35	2		2	GRB7	17	37901389	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	9995425	37901389	43293821	573	8036											
MSL1	339287	broad.mit.edu	37	chr17	38287837	38287837	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaaacttcagtcttggctGgtgagtagaataggaattgt	13	4	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38287837	A	A	38287837	3	1	8	1	0	0	0	0	1	0	0	0	9971	1362	47	4	644	4	MSL1	17	38287837	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	386448	38287837	42907373	574	8037											
MPP2	4355	broad.mit.edu	37	chr17	41958159	41958159	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaatcagtaccagggttttCcggcggaacgggggcatgcg	15	11	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41958159	A	A	41958159	2	1	8	1	0	0	0	0	0	0	0	1	9828	842	30	3		3	MPP2	17	41958159	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	3670322	41958159	39237051	575	8038											
TTLL6	284076	broad.mit.edu	37	chr17	46867264	46867264	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggagtcagagagagagCcccgcaaggctggggagtgc	19	9	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46867264	A	A	46867264	1	1	8	0	1	0	0	0	0	0	0	0	16857	754	26	3		3	TTLL6	17	46867264	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	4909105	46867264	34327946	576	8039											
CACNA1G	8913	broad.mit.edu	37	chr17	48681721	48681721	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcccctgggtcctatggctCaagctgctgttgctgccttc	12	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48681721	T	T	48681721	1	4	8	0	1	0	0	0	0	0	0	0	2570	841	29	4		4	CACNA1G	17	48681721	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1814457	48681721	32513489	577	8040											
KIF2B	84643	broad.mit.edu	37	chr17	51901812	51901812	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggggcagagattaacaAgagtcttctagccctcaaag	12	8	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51901812	G	G	51901812	3	3	8	1	0	0	0	0	1	0	0	0	8368	72	3	5	1420	5	KIF2B	17	51901812	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	3220091	51901812	29293398	578	8041											
ANKFN1	162282	broad.mit.edu	37	chr17	54230835	54230835	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccctccaccccccaggtCctctttcaactcaagagctc	4	19	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54230835	A	A	54230835	1	1	8	0	1	0	0	0	0	0	0	0	625	870	30	3		3	ANKFN1	17	54230835	5'Flank	SNP	C	TCGA-05-4395-01A-01D-1265-08	2329023	54230835	26964375	579	8042											
MRC2	9902	broad.mit.edu	37	chr17	60744608	60744608	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaccccgtggtctggggcgGagctggagctgagcaccagg	19	11	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60744608	T	T	60744608	1	4	8	0	1	0	0	0	0	0	0	0	9852	1189	41	3		3	MRC2	17	60744608	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6513773	60744608	20450602	580	8043											
PRKCA	5578	broad.mit.edu	37	chr17	64299089	64299089	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaaggaccacaaattcatCgcgcgcttcttcaagcagcc	9	13	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64299089	A	A	64299089	2	1	8	1	0	0	0	0	0	0	0	1	12613	874	31	3		3	PRKCA	17	64299089	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	3554481	64299089	16896121	581	8044											
BPTF	2186	broad.mit.edu	37	chr17	65850144	65850144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttcccaagtcctctgaGgatttaatggtgcctaatga	9	8	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65850144	T	T	65850144	3	4	8	1	0	0	0	0	1	0	0	0	1504	991	35	2	708	2	BPTF	17	65850144	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1551055	65850144	15345066	582	8045											
ABCA10	10349	broad.mit.edu	37	chr17	67148168	67148168	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatacttgtcactcaaacCgaaaacatcctttacctttc	2	14	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67148168	T	T	67148168	1	4	8	0	1	0	0	0	0	0	0	0	29	667	23	4		4	ABCA10	17	67148168	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	1298024	67148168	14047042	583	8046											
AZI1	22994	broad.mit.edu	37	chr17	79171723	79171723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcatcgggggctgtcaGggcagcctgaggacttgggt	17	11	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79171723	T	T	79171723	1	4	8	0	1	0	0	0	0	0	0	0	1245	1015	35	2		2	AZI1	17	79171723	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	12023555	79171723	2023487	584	8047											
FOXK2	3607	broad.mit.edu	37	chr17	80544225	80544225	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccacagggaggtcaaaggTaggcggaggggaaaggagga	20	5	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80544225	C	C	80544225	1	2	8	0	1	0	0	0	0	0	0	0	6075	1653	57	5		5	FOXK2	17	80544225	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	1372502	80544225	650985	585	8048											
LAMA3	3909	broad.mit.edu	37	chr18	21474925	21474925	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggccaccatgggcgagcAgctccgcctggtcaagtctc	12	16	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21474925	C	C	21474925	3	2	8	1	0	0	0	0	1	0	0	0	8679	188	7	5	5865	5	LAMA3	18	21474925	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08		21474925	56602323	586	8049											
ASXL3	80816	broad.mit.edu	37	chr18	31325019	31325019	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtccctggtgcagggagctCaggctgtcgtctgtcctctg	14	12	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31325019	A	A	31325019	4	1	8	1	0	0	0	0	0	1	0	0	1072	838	29	3	5253	3	ASXL3	18	31325019	Nonsense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	9850094	31325019	46752229	587	8050											
SETBP1	26040	broad.mit.edu	37	chr18	42532073	42532073	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaccggcaaaagcatctcaTtgtggacaactttctggccc	8	14	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42532073	A	A	42532073	3	1	8	1	0	0	0	0	1	0	0	0	14242	1493	52	5	2971	5	SETBP1	18	42532073	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	11207054	42532073	35545175	588	8051											
SIGLEC15	284266	broad.mit.edu	37	chr18	43421949	43421949	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcatctctgagccctgcCggttccagccgcactgctcc	8	18	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43421949	T	T	43421949	1	4	8	0	1	0	0	0	0	0	0	0	14423	667	23	4		4	SIGLEC15	18	43421949	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	889876	43421949	34655299	589	8052											
DCC	1630	broad.mit.edu	37	chr18	50942621	50942621	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattcctcttttcacctggaCcatacacctgatgaagcaga	6	12	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50942621	G	G	50942621	1	3	8	0	1	0	0	0	0	0	0	0	4315	522	18	4		4	DCC	18	50942621	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	7520672	50942621	27134627	590	8053											
TCF4	6925	broad.mit.edu	37	chr18	52927128	52927128	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatcaggaagtacaagggggGaatcattcttataaactgtt	10	5	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52927128	A	A	52927128	1	1	8	0	1	0	0	0	0	0	0	0	15817	1189	41	4		4	TCF4	18	52927128	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1984507	52927128	25150120	591	8054											
HMHA1	23526	broad.mit.edu	37	chr19	1080588	1080588	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctggggtgtggagctgcctCctctcctgagcctcagggtt	15	12	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1080588	T	T	1080588	1	4	8	0	1	0	0	0	0	0	0	0	7307	870	30	4		4	HMHA1	19	1080588	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08		1080588	58048395	592	8055											
STK11	6794	broad.mit.edu	37	chr19	1207078	1207078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgatgggggacctgctgGgggaaggctcttacggcaag	17	9	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1207078	T	T	1207078	3	4	8	1	0	0	0	0	1	0	0	0	15405	1232	43	2	168	2	STK11	19	1207078	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	126490	1207078	57921905	593	8056											
HNRNPM	4670	broad.mit.edu	37	chr19	8550658	8550658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcatgggctccgtggagcGcatgggctccggcattgagc	16	13	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8550658	T	T	8550658	3	4	8	1	0	0	0	0	1	0	0	0	7338	1087	38	3	1400	3	HNRNPM	19	8550658	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	7343580	8550658	50578325	594	8057											
MUC16	94025	broad.mit.edu	37	chr19	9086155	9086155	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgagtgctgtttcccataGacagggacttagaagaggta	13	6	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9086155	C	C	9086155	3	2	8	1	0	0	0	0	1	0	0	0	10067	942	33	4	38199	4	MUC16	19	9086155	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	535497	9086155	50042828	595	8058											
OR7E24	26648	broad.mit.edu	37	chr19	9361887	9361887	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccatgtacctggtcacGgtgctggggaacctgctcat	12	12	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9361887	A	A	9361887	2	1	8	1	0	0	0	0	0	0	0	1	11315	1103	39	4		4	OR7E24	19	9361887	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	275732	9361887	49767096	596	8059											
KEAP1	9817	broad.mit.edu	37	chr19	10600419	10600419	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaaggcggtttgtcccgTcaaagccccccacggcataa	9	13	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10600419	C	C	10600419	3	2	8	1	0	0	0	0	1	0	0	0	8211	1667	58	5	450	5	KEAP1	19	10600419	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	1238532	10600419	48528564	597	8060											
CLEC17A	388512	broad.mit.edu	37	chr19	14710915	14710915	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactacttctccccaagcaCcaagtcatgggatgaggccc	8	14	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14710915	T	T	14710915	3	4	8	1	0	0	0	0	1	0	0	0	3533	507	18	4	806	4	CLEC17A	19	14710915	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4110496	14710915	44418068	598	8061											
EMR2	30817	broad.mit.edu	37	chr19	14875215	14875215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacagaaaacatgcagagCtggagtctggggcagaccca	14	9	1	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14875215	A	A	14875215	1	1	8	0	1	0	0	0	0	0	0	0	5147	812	28	3		3	EMR2	19	14875215	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	164300	14875215	44253768	599	8062											
SLC1A6	6511	broad.mit.edu	37	chr19	15083694	15083694	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgctggccgctctcccgcAggaacaggctgttgccatgg	14	15	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15083694	G	G	15083694	3	3	8	1	0	0	0	0	1	0	0	0	14549	188	7	5	1701	5	SLC1A6	19	15083694	Missense_Mutation	SNP	A	TCGA-05-4395-01A-01D-1265-08	208479	15083694	44045289	600	8063											
PLVAP	83483	broad.mit.edu	37	chr19	17476412	17476412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatccgcccggaggctccGggccagctcctccaccttgg	12	17	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17476412	T	T	17476412	2	4	8	1	0	0	0	0	0	0	0	1	12211	1115	39	1		1	PLVAP	19	17476412	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	2392718	17476412	41652571	601	8064											
ZNF85	7639	broad.mit.edu	37	chr19	21132566	21132566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttcaacccttactaaaCataagataattcatactgga	3	10	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21132566	A	A	21132566	3	1	8	1	0	0	0	0	1	0	0	0	18322	478	17	3	1260	3	ZNF85	19	21132566	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	3656154	21132566	37996417	602	8065											
TSHZ3	57616	broad.mit.edu	37	chr19	31768902	31768902	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcttgggcatgggggaCgtctggctgctgggtggaga	19	6	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768902	T	T	31768902	2	4	8	1	0	0	0	0	0	0	0	1	16750	523	19	4		4	TSHZ3	19	31768902	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	10636336	31768902	27360081	603	8066											
MAG	4099	broad.mit.edu	37	chr19	35804024	35804024	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcagaagctccagagtggGacctggtgaccgcagggctc	16	11	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35804024	T	T	35804024	1	4	8	0	1	0	0	0	0	0	0	0	9250	1189	41	3		3	MAG	19	35804024	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4035122	35804024	23324959	604	8067											
PRODH2	58510	broad.mit.edu	37	chr19	36302983	36302983	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtaggcggggtggtgagggGagcccgatgggcagccgcgc	23	9	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36302983	A	A	36302983	1	1	8	0	1	0	0	0	0	0	0	0	12655	1189	41	4		4	PRODH2	19	36302983	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	498959	36302983	22826000	605	8068											
ZNF566	84924	broad.mit.edu	37	chr19	36963677	36963677	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggggaaaggtaggatcatTtgaaagctcatgtagaaaag	13	3	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36963677	C	C	36963677	1	2	8	0	1	0	0	0	0	0	0	0	18124	1856	64	5		5	ZNF566	19	36963677	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	660694	36963677	22165306	606	8069											
SARS2	54938	broad.mit.edu	37	chr19	39409051	39409051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctccccaccacccacaCaggtcctcacctgcaagccc	5	23	1	0	rs60352446		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39409051	T	T	39409051	1	4	8	0	1	0	0	0	0	0	0	0	13957	493	17	4		4	SARS2	19	39409051	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	2445374	39409051	19719932	607	8070											
FCGBP	8857	broad.mit.edu	37	chr19	40419930	40419930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggccagtgcattggcagCttgacccccaccccgcagag	11	15	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40419930	A	A	40419930	3	1	8	1	0	0	0	0	1	0	0	0	5835	797	28	3	13277	3	FCGBP	19	40419930	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1010879	40419930	18709053	608	8071											
ZNF780A	284323	broad.mit.edu	37	chr19	40581599	40581599	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacttcccacattccttacaTtcaaacagtttctcacctgt	3	14	2	0	rs140183562	byFrequency	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40581599	A	A	40581599	3	1	8	1	0	0	0	0	1	0	0	0	18281	1490	52	5	1306	5	ZNF780A	19	40581599	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	161669	40581599	18547384	609	8072											
LTBP4	8425	broad.mit.edu	37	chr19	41114293	41114293	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggtgagctggctctggcaGaagtgggtgccatcttcaag	15	9	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41114293	C	C	41114293	1	2	8	0	1	0	0	0	0	0	0	0	9163	957	33	4		4	LTBP4	19	41114293	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	532694	41114293	18014690	610	8073											
POU2F2	5452	broad.mit.edu	37	chr19	42600252	42600252	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgcgtgaagcccagcttGatgcggcgttgcttgaaggt	14	10	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42600252	C	C	42600252	3	2	8	1	0	0	0	0	1	0	0	0	12368	1280	45	4	822	4	POU2F2	19	42600252	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1485959	42600252	16528731	611	8074											
PSG1	5669	broad.mit.edu	37	chr19	43383759	43383759	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgcttgtgtgttctccTctgtggagataagcctagga	12	9	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43383759	A	A	43383759	1	1	8	0	1	0	0	0	0	0	0	0	12759	1566	54	5		5	PSG1	19	43383759	5'UTR	SNP	T	TCGA-05-4395-01A-01D-1265-08	783507	43383759	15745224	612	8075											
ZNF224	7767	broad.mit.edu	37	chr19	44605073	44605073	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagaacttcaggaacctgctCtcagtgggtgaggacaggca	14	9	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44605073	T	T	44605073	2	4	8	1	0	0	0	0	0	0	0	1	17904	900	32	4		4	ZNF224	19	44605073	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	1221314	44605073	14523910	613	8076											
APOE	348	broad.mit.edu	37	chr19	45411925	45411925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaggcccggctgggcgcGgacatggaggacgtgtgcgg	21	11	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45411925	T	T	45411925	2	4	8	1	0	0	0	0	0	0	0	1	804	1103	39	1		1	APOE	19	45411925	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	806852	45411925	13717058	614	8077											
EML2	24139	broad.mit.edu	37	chr19	46124826	46124826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaccagcgtcccgtccCgcagggcgcagagcccaaac	11	18	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46124826	A	A	46124826	3	1	8	1	0	0	0	0	1	0	0	0	5139	652	23	1	1078	1	EML2	19	46124826	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	712901	46124826	13004157	615	8078											
SYMPK	8189	broad.mit.edu	37	chr19	46357804	46357804	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggatggatcaagctcaggGaaccagcggatgggctgggc	18	8	2	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46357804	T	T	46357804	1	4	8	0	1	0	0	0	0	0	0	0	15558	1189	41	3		3	SYMPK	19	46357804	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	232978	46357804	12771179	616	8079											
CEACAM18	729767	broad.mit.edu	37	chr19	51986489	51986489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccgttaccgatgcactGtggagaaccccgtgacacag	13	12	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51986489	T	T	51986489	3	4	8	1	0	0	0	0	1	0	0	0	3219	1377	48	3	1093	3	CEACAM18	19	51986489	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	5628685	51986489	7142494	617	8080											
ZNF665	79788	broad.mit.edu	37	chr19	53668506	53668506	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgctaagtgtgaatactGagtgaaaaccttgacgcatt	9	6	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53668506	A	A	53668506	4	1	8	1	0	0	0	0	0	1	0	0	18200	1299	45	4	803	4	ZNF665	19	53668506	Nonsense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	1682017	53668506	5460477	618	8081											
PRKCG	5582	broad.mit.edu	37	chr19	54395925	54395925	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggctggggcctggggaTggagcgcaatattaccatct	16	9	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54395925	C	C	54395925	1	2	8	0	1	0	0	0	0	0	0	0	12618	1479	51	5		5	PRKCG	19	54395925	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	727419	54395925	4733058	619	8082											
LILRB5	10990	broad.mit.edu	37	chr19	54761086	54761087	+	5'UTR	INS	-	A	A													cccactggactcagctgtgcINSaggcggatgagaccacggtg							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54761087	A	A	54761086	6	5	8	0	1	1	1	0	0	0	0	0	8866	725	25	0		0	LILRB5	19	54761086	5'UTR	INS	-	TCGA-05-4395-01A-01D-1265-08	365161	54761086	4367897	620	8083											
LILRB1	10859	broad.mit.edu	37	chr19	55145225	55145225	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaatcccattcccctcaAagactcgagcttccctccag	6	16	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55145225	T	T	55145225	1	4	8	0	1	0	0	0	0	0	0	0	8862	29	1	5		5	LILRB1	19	55145225	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	384139	55145225	3983758	621	8084											
KIR2DL3	3804	broad.mit.edu	37	chr19	55270251	55270251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggccaacttctccatcGgtcccatgatggaagacctg	9	14	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55270251	T	T	55270251	1	4	8	0	1	0	0	0	0	0	0	0	8388	1131	39	1		1	KIR2DL3	19	55270251	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	125026	55270251	3858732	622	8085											
KIR2DL1	3802	broad.mit.edu	37	chr19	55281414	55281414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggagatataggcctggaGgtggagttatgggcctggag	20	4	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55281414	T	T	55281414	1	4	8	0	1	0	0	0	0	0	0	0	8387	1015	35	2		2	KIR2DL1	19	55281414	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	11163	55281414	3847569	623	8086											
NLRP5	126206	broad.mit.edu	37	chr19	56538866	56538867	+	Frame_Shift_Ins	INS	-	CC	CC													gctcaagtcagaggtcgtgtINSctccccgttacctgttagtt							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	56538867	CC	CC	56538866	7	5	8	1	0	1	1	0	0	0	0	0	10575	1667	58	0	1293	0	NLRP5	19	56538866	Frame_Shift_Ins	INS	-	TCGA-05-4395-01A-01D-1265-08	1257452	56538866	2590117	624	8087											
DUXA	503835	broad.mit.edu	37	chr19	57669873	57669873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaaagatggaggggggcGgtcaaggaatattgcaaggg	19	3	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57669873	T	T	57669873	1	4	8	0	1	0	0	0	0	0	0	0	4874	1131	39	1		1	DUXA	19	57669873	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1131007	57669873	1459110	625	8088											
SIRPB1	10326	broad.mit.edu	37	chr20	1552325	1552325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggggagtgggcttggCagccaggtgtgggcttgggc	23	6	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1552325	A	A	1552325	1	1	8	0	1	0	0	0	0	0	0	0	14446	725	25	3		3	SIRPB1	20	1552325	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08		1552325	61473195	626	8089											
PLCB4	5332	broad.mit.edu	37	chr20	9343696	9343696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaagagatgaaggctaGgtggttccttcctccaaatt	11	7	0	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9343696	T	T	9343696	1	4	8	0	1	0	0	0	0	0	0	0	12125	1015	35	2		2	PLCB4	20	9343696	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	7791371	9343696	53681824	627	8090											
ISM1	140862	broad.mit.edu	37	chr20	13280019	13280019	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcaggtataacgaggcCcggcctcccaacaacggaca	12	13	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13280019	A	A	13280019	2	1	8	1	0	0	0	0	0	0	0	1	7930	610	22	2		2	ISM1	20	13280019	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	3936323	13280019	49745501	628	8091											
ID1	3397	broad.mit.edu	37	chr20	30193153	30193153	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcttccacctcatttttttCgctttgcccattctgtttca	5	13	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30193153	T	T	30193153	1	4	8	0	1	0	0	0	0	0	0	0	7559	899	31	4		4	ID1	20	30193153	5'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	16913134	30193153	32832367	629	8092											
TPX2	22974	broad.mit.edu	37	chr20	30388637	30388637	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgttgccccccaggcccCactccccacacctgaaacta	6	21	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30388637	T	T	30388637	1	4	8	0	1	0	0	0	0	0	0	0	16556	609	21	4		4	TPX2	20	30388637	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	195484	30388637	32636883	630	8093											
ZNF341	84905	broad.mit.edu	37	chr20	32368854	32368854	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgcccctggccaccctgtgGagaatggactacaggaggca	14	12	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32368854	C	C	32368854	1	2	8	0	1	0	0	0	0	0	0	0	17983	1189	41	4		4	ZNF341	20	32368854	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1980217	32368854	30656666	631	8094											
DYNLRB1	83658	broad.mit.edu	37	chr20	33122702	33122702	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctccagaggatccaagcAgggcccgaggagttgaagga	15	9	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33122702	G	G	33122702	1	3	8	0	1	0	0	0	0	0	0	0	4890	203	7	5		5	DYNLRB1	20	33122702	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	753848	33122702	29902818	632	8095											
NCOA6	23054	broad.mit.edu	37	chr20	33330706	33330706	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagctggaaggattctgCgggctctcctgatagaccat	14	10	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33330706	T	T	33330706	2	4	8	1	0	0	0	0	0	0	0	1	10328	755	27	4		4	NCOA6	20	33330706	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	208004	33330706	29694814	633	8096											
UQCC	55245	broad.mit.edu	37	chr20	33891776	33891776	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtcggagaatggggctTcaggatgctctgaggattct	15	6	3	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33891776	G	G	33891776	3	3	8	1	0	0	0	0	1	0	0	0	17141	1792	62	5	41	5	UQCC	20	33891776	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	561070	33891776	29133744	634	8097											
PLCG1	5335	broad.mit.edu	37	chr20	39794177	39794177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accagggcaacgaggatgagGaggagcccaaggaggtgagg	19	7	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39794177	A	A	39794177	3	1	8	1	0	0	0	0	1	0	0	0	12130	1175	41	4	1655	4	PLCG1	20	39794177	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	5902401	39794177	23231343	635	8098											
PLCG1	5335	broad.mit.edu	37	chr20	39795098	39795098	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtggtgctggccgggcctGactctgcctgttctcaggtg	17	11	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39795098	A	A	39795098	1	1	8	0	1	0	0	0	0	0	0	0	12130	1305	45	4		4	PLCG1	20	39795098	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	921	39795098	23230422	636	8099											
PTPRT	11122	broad.mit.edu	37	chr20	40714510	40714510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactgagataaggaaagaGgtcacagaaggagctcaaag	13	5	2	4			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40714510	T	T	40714510	1	4	8	0	1	0	0	0	0	0	0	0	12920	1015	35	2		2	PTPRT	20	40714510	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	919412	40714510	22311010	637	8100											
GTSF1L	149699	broad.mit.edu	37	chr20	42355398	42355398	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgcttcttgtggagaaGcccttttgtaagaaggatgg	13	5	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42355398	T	T	42355398	1	4	8	0	1	0	0	0	0	0	0	0	6952	986	34	3		3	GTSF1L	20	42355398	5'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	1640888	42355398	20670122	638	8101											
KCNK15	60598	broad.mit.edu	37	chr20	43378633	43378633	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttggggtgatgaatgacctAgttaggactagtatttggag	14	3	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43378633	T	T	43378633	1	4	8	0	1	0	0	0	0	0	0	0	8132	435	15	5		5	KCNK15	20	43378633	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	1023235	43378633	19646887	639	8102											
PLTP	5360	broad.mit.edu	37	chr20	44538120	44538120	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagatgagctgtggggctcGaaaagggtgagctggggttg	20	5	0	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44538120	T	T	44538120	1	4	8	0	1	0	0	0	0	0	0	0	12209	1073	37	3		3	PLTP	20	44538120	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1159487	44538120	18487400	640	8103											
ZNF335	63925	broad.mit.edu	37	chr20	44578472	44578472	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaccaggtgctgtacggtCtggccatctgccgtggtgat	14	11	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44578472	T	T	44578472	2	4	8	1	0	0	0	0	0	0	0	1	17978	912	32	4		4	ZNF335	20	44578472	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	40352	44578472	18447048	641	8104											
NCOA3	8202	broad.mit.edu	37	chr20	46254147	46254147	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaactatttccaatgatgaTgatgttcaaaaagccgatgt	7	6	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46254147	C	C	46254147	2	2	8	1	0	0	0	0	0	0	0	1	10325	1461	51	5		5	NCOA3	20	46254147	Silent	SNP	T	TCGA-05-4395-01A-01D-1265-08	1675675	46254147	16771373	642	8105											
TMEM189	387521	broad.mit.edu	37	chr20	48741560	48741560	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcggtttgggggctagGgaaggttggcaaccaggtag	19	6	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48741560	A	A	48741560	1	1	8	0	1	0	0	0	0	0	0	0	16234	1247	43	4		4	TMEM189	20	48741560	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	2487413	48741560	14283960	643	8106											
ZNF831	128611	broad.mit.edu	37	chr20	57769595	57769595	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacagcacccaaaacccctTtccctcactgaaggctgagc	6	18	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57769595	G	G	57769595	3	3	8	1	0	0	0	0	1	0	0	0	18314	1841	64	5	3523	5	ZNF831	20	57769595	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	9028035	57769595	5255925	644	8107											
PHACTR3	116154	broad.mit.edu	37	chr20	58349576	58349576	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatggcccattaagtgtgggGatctcggccagaggtctagt	15	8	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58349576	T	T	58349576	1	4	8	0	1	0	0	0	0	0	0	0	11906	1189	41	3		3	PHACTR3	20	58349576	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	579981	58349576	4675944	645	8108											
COL20A1	57642	broad.mit.edu	37	chr20	61929352	61929352	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcggcctcggctacctggTgcaggtgaagcccatggcag	16	12	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61929352	A	A	61929352	3	1	8	1	0	0	0	0	1	0	0	0	3711	1696	59	5	179	5	COL20A1	20	61929352	Missense_Mutation	SNP	T	TCGA-05-4395-01A-01D-1265-08	3579776	61929352	1096168	646	8109											
KCNQ2	3785	broad.mit.edu	37	chr20	62076578	62076578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctagcaataccaccccCaccaggcctcaccaatcaca	4	18	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62076578	A	A	62076578	1	1	8	0	1	0	0	0	0	0	0	0	8153	609	21	2		2	KCNQ2	20	62076578	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	147226	62076578	948942	647	8110											
C20orf195	79025	broad.mit.edu	37	chr20	62187844	62187844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccgaaacctgctgcccaaCcgatcctataagttcaccat	6	15	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62187844	A	A	62187844	3	1	8	1	0	0	0	0	1	0	0	0	2122	506	18	3	830	3	C20orf195	20	62187844	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	111266	62187844	837676	648	8111											
TPD52L2	7165	broad.mit.edu	37	chr20	62517464	62517464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggtggactccggcagGgcccttgggcggctgtgcta	19	11	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62517464	T	T	62517464	1	4	8	0	1	0	0	0	0	0	0	0	16523	1247	43	2		2	TPD52L2	20	62517464	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	329620	62517464	508056	649	8112											
MYT1	4661	broad.mit.edu	37	chr20	62871864	62871864	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctccctcgccctgccccgCaccgtggggatgcccaactc	9	21	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62871864	T	T	62871864	1	4	8	0	1	0	0	0	0	0	0	0	10200	725	25	4		4	MYT1	20	62871864	3'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	354400	62871864	153656	650	8113											
TPTE	7179	broad.mit.edu	37	chr21	10906860	10906860	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaacatgtggcagggttGgaaagaacataattctttcc	10	6	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10906860	T	T	10906860	1	4	8	0	1	0	0	0	0	0	0	0	16554	1363	47	2		2	TPTE	21	10906860	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08		10906860	37223035	651	8114											
GABPA	2551	broad.mit.edu	37	chr21	27135424	27135424	+	Intron	DEL	T	-	-													tctcttaatatccatctccaTtttcatgtcatcttttccat							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27135424	-	-	27135424	6	5	8	0	1	1	0	1	0	0	0	0	6217	1508	52	0		0	GABPA	21	27135424	Intron	DEL	T	TCGA-05-4395-01A-01D-1265-08	16228564	27135424	20994471	652	8115											
SON	6651	broad.mit.edu	37	chr21	34918600	34918600	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatgcagctgcctctgcCaggagtctaccaaatgaaga	12	10	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34918600	T	T	34918600	2	4	8	1	0	0	0	0	0	0	0	1	15040	581	21	4		4	SON	21	34918600	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	7783176	34918600	13211295	653	8116											
BRWD1	54014	broad.mit.edu	37	chr21	40630279	40630279	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctcataaagctaccttcAgactactaattaagttgtaa	4	10	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40630279	C	C	40630279	1	2	8	0	1	0	0	0	0	0	0	0	1534	203	7	5		5	BRWD1	21	40630279	Intron	SNP	A	TCGA-05-4395-01A-01D-1265-08	5711679	40630279	7499616	654	8117											
DSCAM	1826	broad.mit.edu	37	chr21	42080523	42080523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgttggggtggacgtggCggatcccggggacatcgtag	19	9	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42080523	A	A	42080523	3	1	8	1	0	0	0	0	1	0	0	0	4808	768	27	3	5948	3	DSCAM	21	42080523	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	1450244	42080523	6049372	655	8118											
COL6A1	1291	broad.mit.edu	37	chr21	47410821	47410821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgttttgacttctgtctgGgcggtctggggctgctgcca	14	11	3	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47410821	T	T	47410821	1	4	8	0	1	0	0	0	0	0	0	0	3731	1247	43	2		2	COL6A1	21	47410821	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	5330298	47410821	719074	656	8119											
COL6A2	1292	broad.mit.edu	37	chr21	47545874	47545874	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgcctacgaccgcctcatCaaggagagccggcgccagaa	11	14	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47545874	G	G	47545874	3	3	8	1	0	0	0	0	1	0	0	0	3732	816	29	4	2243	4	COL6A2	21	47545874	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	135053	47545874	584021	657	8120											
PCNT	5116	broad.mit.edu	37	chr21	47810811	47810811	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagcaggcctggcctcactGagggaaggaagccttcagaa	15	10	2	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47810811	A	A	47810811	1	1	8	0	1	0	0	0	0	0	0	0	11684	1305	45	4		4	PCNT	21	47810811	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	264937	47810811	319084	658	8121											
CCT8L2	150160	broad.mit.edu	37	chr22	17076272	17076272	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatctggcttggccattgCgcccattttttgcaaagcta	8	11	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17076272	T	T	17076272	1	4	8	0	1	0	0	0	0	0	0	0	2991	783	27	4		4	CCT8L2	22	17076272	5'Flank	SNP	C	TCGA-05-4395-01A-01D-1265-08		17076272	34228294	659	8122											
SUSD2	56241	broad.mit.edu	37	chr22	24584423	24584423	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgggagcagcttggctgtGagcaccaggccaagactcct	14	11	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24584423	C	C	24584423	1	2	8	0	1	0	0	0	0	0	0	0	15526	1305	45	4		4	SUSD2	22	24584423	3'UTR	SNP	G	TCGA-05-4395-01A-01D-1265-08	7508151	24584423	26720143	660	8123											
MYO18B	84700	broad.mit.edu	37	chr22	26294576	26294576	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcccgtcacaccttatTcctgtatggttctcccaaga	6	15	2	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26294576	C	C	26294576	1	2	8	0	1	0	0	0	0	0	0	0	10160	1798	62	5		5	MYO18B	22	26294576	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	1710153	26294576	25009990	661	8124											
CRYBB1	1414	broad.mit.edu	37	chr22	26995496	26995496	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggacagggaaggacccctcGaggtgccactgcttgtcacg	14	12	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26995496	A	A	26995496	2	1	8	1	0	0	0	0	0	0	0	1	3942	1045	37	4		4	CRYBB1	22	26995496	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	700920	26995496	24309070	662	8125											
DEPDC5	9681	broad.mit.edu	37	chr22	32302347	32302347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctcaccaaaacatggcGctccagcgccacaggggatg	11	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32302347	T	T	32302347	3	4	8	1	0	0	0	0	1	0	0	0	4482	1087	38	3	4833	3	DEPDC5	22	32302347	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	5306851	32302347	19002219	663	8126											
SYN3	8224	broad.mit.edu	37	chr22	33265054	33265054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctgcggtagtcttcccCcagggccatgctgtaggcat	13	13	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33265054	A	A	33265054	3	1	8	1	0	0	0	0	1	0	0	0	15561	623	22	2	1262	2	SYN3	22	33265054	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	962707	33265054	18039512	664	8127											
LARGE	9215	broad.mit.edu	37	chr22	34046288	34046288	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgtttccaggaggcatTtgcaaggggtgagggcaatc	16	7	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34046288	A	A	34046288	1	1	8	0	1	0	0	0	0	0	0	0	8699	1856	64	5		5	LARGE	22	34046288	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	781234	34046288	17258278	665	8128											
SOX10	6663	broad.mit.edu	37	chr22	38379591	38379591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcggatgcacacggggaaCttgtcatcgtccgcctcgcc	12	15	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38379591	A	A	38379591	3	1	8	1	0	0	0	0	1	0	0	0	15055	564	20	3	1211	3	SOX10	22	38379591	Missense_Mutation	SNP	C	TCGA-05-4395-01A-01D-1265-08	4333303	38379591	12924975	666	8129											
APOBEC3F	200316	broad.mit.edu	37	chr22	39441197	39441197	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggctgagtcaggcaggGgcccgcgtgaagattatgga	17	8	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39441197	A	A	39441197	2	1	8	1	0	0	0	0	0	0	0	1	795	1219	43	4		4	APOBEC3F	22	39441197	Silent	SNP	G	TCGA-05-4395-01A-01D-1265-08	1061606	39441197	11863369	667	8130											
NUP50	10762	broad.mit.edu	37	chr22	45580629	45580629	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttctcttctttgacattCtaagaacttatagataactt	3	8	4	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45580629	G	G	45580629	1	3	8	0	1	0	0	0	0	0	0	0	10861	928	32	4		4	NUP50	22	45580629	3'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08	6139432	45580629	5723937	668	8131											
PIM3	415116	broad.mit.edu	37	chr22	50356528	50356528	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctccaggtgcgtggtggctcGaggcgggggtgggggcctcg	22	10	0	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50356528	C	C	50356528	1	2	8	0	1	0	0	0	0	0	0	0	12024	1073	37	4		4	PIM3	22	50356528	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	4775899	50356528	948038	669	8132											
PIM3	415116	broad.mit.edu	37	chr22	50356707	50356707	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggcgtcccggagagctgtGacctgcggctgtgcaccctc	16	14	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50356707	A	A	50356707	3	1	8	1	0	0	0	0	1	0	0	0	12024	1290	45	4	935	4	PIM3	22	50356707	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	179	50356707	947859	670	8133											
CPT1B	1375	broad.mit.edu	37	chr22	51014842	51014842	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcctcttcccacctctcccTcctcacccagccccattatt	1	22	3	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51014842	A	A	51014842	1	1	8	0	1	0	0	0	0	0	0	0	3864	1566	54	5		5	CPT1B	22	51014842	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	658135	51014842	289724	671	8134											
IL3RA	3563	broad.mit.edu	37	chrX	1499841	1499841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctggcactgtctgtcCtggacacgctgtgtcccaga	11	14	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1499841	A	A	1499841	1	1	8	0	1	0	0	0	0	0	0	0	7765	696	24	2		2	IL3RA	23	1499841	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08		1499841	153770719	672	8135											
CD99	4267	broad.mit.edu	37	chrX	2635785	2635785	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcaactagaaagaagacaGaagtgatttgagtgctccgg	13	6	0	6			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2635785	T	T	2635785	1	4	8	0	1	0	0	0	0	0	0	0	3080	957	33	3		3	CD99	23	2635785	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	1135944	2635785	152634775	673	8136											
MXRA5	25878	broad.mit.edu	37	chrX	3242083	3242083	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actggtacaagcctgagtcaGatggctccatggacttgatc	11	10	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3242083	A	A	3242083	3	1	8	1	0	0	0	0	1	0	0	0	10097	942	33	4	6855	4	MXRA5	23	3242083	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	606298	3242083	152028477	674	8137											
MID1	4281	broad.mit.edu	37	chrX	10535644	10535644	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaggaagctgatcagctatCtggaaacaagaatgtaagat	10	6	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10535644	T	T	10535644	5	4	8	1	0	0	0	0	0	0	1	0	9669	927	32	4		4	MID1	23	10535644	Splice_Site	SNP	C	TCGA-05-4395-01A-01D-1265-08	7293561	10535644	144734916	675	8138											
MAGEB3	4114	broad.mit.edu	37	chrX	30254710	30254710	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgccactgaggagaagatCtgggaattcctgaataagat	12	6	1	5			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30254710	A	A	30254710	2	1	8	1	0	0	0	0	0	0	0	1	9269	903	32	3		3	MAGEB3	23	30254710	Silent	SNP	C	TCGA-05-4395-01A-01D-1265-08	19719066	30254710	125015850	676	8139											
MAGEB1	4112	broad.mit.edu	37	chrX	30268769	30268769	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatactcccacaagctccccTgctgctggcattccccagaa	7	17	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30268769	A	A	30268769	2	1	8	1	0	0	0	0	0	0	0	1	9264	1567	55	5		5	MAGEB1	23	30268769	Silent	SNP	T	TCGA-05-4395-01A-01D-1265-08	14059	30268769	125001791	677	8140											
RBM10	8241	broad.mit.edu	37	chrX	47044476	47044477	+	Missense_Mutation	DNP	GG	AT	AT													tgccaaggacatggaacgctGggcccgcagtctcaacaaac							TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	47044477	AT	AT	47044476	3	1	8	1	0	0	0	0	1	0	0	0	13219	1357	47	4	2039	4	RBM10	23	47044476	Missense_Mutation	DNP	GG	TCGA-05-4395-01A-01D-1265-08	16775707	47044476	108226084	678	8141											
SSX3	10214	broad.mit.edu	37	chrX	48216750	48216750	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgtagccctggagagagGaaaatgtatttacttatggg	12	6	0	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48216750	A	A	48216750	1	1	8	0	1	0	0	0	0	0	0	0	15323	1189	41	4		4	SSX3	23	48216750	5'Flank	SNP	G	TCGA-05-4395-01A-01D-1265-08	1172274	48216750	107053810	679	8142											
GLOD5	392465	broad.mit.edu	37	chrX	48629475	48629475	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgatcacagaggtgcctttgGaggaaatgatccagcacctc	11	10	1	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48629475	C	C	48629475	3	2	8	1	0	0	0	0	1	0	0	0	6515	1175	41	4	344	4	GLOD5	23	48629475	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	412725	48629475	106641085	680	8143											
ITIH5L	347365	broad.mit.edu	37	chrX	54780413	54780413	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtgcctgcaaaggagagaGagactgtgttgggaagggac	17	5	0	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54780413	C	C	54780413	1	2	8	0	1	0	0	0	0	0	0	0	7978	957	33	4		4	ITIH5L	23	54780413	Intron	SNP	G	TCGA-05-4395-01A-01D-1265-08	6150938	54780413	100490147	681	8144											
OPHN1	4983	broad.mit.edu	37	chrX	67331626	67331626	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagctgagaggcagttTctgtgtagtccaaccacatg	12	8	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67331626	A	A	67331626	1	1	8	0	1	0	0	0	0	0	0	0	10969	1798	62	5		5	OPHN1	23	67331626	Intron	SNP	T	TCGA-05-4395-01A-01D-1265-08	12551213	67331626	87938934	682	8145											
BRWD3	254065	broad.mit.edu	37	chrX	79999808	79999808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaattcacaataccccCacccaaaaaatagccaaaaa	3	13	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79999808	A	A	79999808	1	1	8	0	1	0	0	0	0	0	0	0	1535	609	21	2		2	BRWD3	23	79999808	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	12668182	79999808	75270752	683	8146											
NRK	203447	broad.mit.edu	37	chrX	105167242	105167242	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctgtcattcagccacctGaagaggatggtgattatgtt	10	9	2	3			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105167242	A	A	105167242	3	1	8	1	0	0	0	0	1	0	0	0	10750	1291	45	4	2813	4	NRK	23	105167242	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	25167434	105167242	50103318	684	8147											
MBNL3	55796	broad.mit.edu	37	chrX	131573492	131573492	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcaaaacaggccaccacacGaccattttccacatggcaaa	5	14	1	0			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131573492	A	A	131573492	3	1	8	1	0	0	0	0	1	0	0	0	9448	1058	37	4	1040	4	MBNL3	23	131573492	Missense_Mutation	SNP	G	TCGA-05-4395-01A-01D-1265-08	26406250	131573492	23697068	685	8148											
FMR1	2332	broad.mit.edu	37	chrX	147013849	147013854	+	Intron	DEL	CATATA	-	-													ttaataatttatggacccctCatatacagggtcaagataat					rs73606781	by1000genomes	TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147013854	-	-	147013849	6	5	8	0	1	1	0	1	0	0	0	0	6018	841	29	0		0	FMR1	23	147013849	Intron	DEL	CATATA	TCGA-05-4395-01A-01D-1265-08	15440357	147013849	8256711	686	8149											
FAM58A	92002	broad.mit.edu	37	chrX	152859976	152859976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccatggcttgagcctctcCaaacaggcaccagttcccca	8	16	1	1			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152859976	A	A	152859976	1	1	8	0	1	0	0	0	0	0	0	0	5641	609	21	2		2	FAM58A	23	152859976	Intron	SNP	C	TCGA-05-4395-01A-01D-1265-08	5846127	152859976	2410584	687	8150											
UTY	7404	broad.mit.edu	37	chrY	15361647	15361647	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatagacatagcttttagtCaacagttttatgaaacagct	7	7	1	2			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15361647	T	T	15361647	1	4	8	0	1	0	0	0	0	0	0	0	17234	841	29	4		4	UTY	24	15361647	3'UTR	SNP	C	TCGA-05-4395-01A-01D-1265-08		15361647	44011919	688	8151											
OR4F5	79501	broad.mit.edu	37	chr1	69537	69537	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaattggctttctccattcGgtgagccagttggcgtttgc	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69537	T	T	69537	2	4	9	1	0	0	0	0	0	0	0	1	11159	1103	39	1		1	OR4F5	1	69537	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08		69537	249181084	1	8152											
UBE2J2	118424	broad.mit.edu	37	chr1	1190786	1190786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacgaggtgcgtctcccCgtctggaaccacgtctggca	13	14	3	0	rs147742881		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1190786	A	A	1190786	3	1	9	1	0	0	0	0	1	0	0	0	16987	652	23	1	206	1	UBE2J2	1	1190786	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1121249	1190786	248059835	2	8153											
CPSF3L	54973	broad.mit.edu	37	chr1	1255879	1255879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgttaggcggccgttctGggtgatgtaggagaagtcag	17	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1255879	T	T	1255879	3	4	9	1	0	0	0	0	1	0	0	0	3859	1357	47	2	1705	2	CPSF3L	1	1255879	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65093	1255879	247994742	3	8154											
MRPL20	55052	broad.mit.edu	37	chr1	1342361	1342361	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgaatcacggttctgacCgccaacctgtagcagcgatt	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1342361	A	A	1342361	2	1	9	1	0	0	0	0	0	0	0	1	9880	639	23	1		1	MRPL20	1	1342361	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	86482	1342361	247908260	4	8155											
MRPL20	55052	broad.mit.edu	37	chr1	1342392	1342392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgatttttccttcccCggaagtgctgggacagaaaa	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1342392	A	A	1342392	3	1	9	1	0	0	0	0	1	0	0	0	9880	652	23	1	366	1	MRPL20	1	1342392	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	1342392	247908229	5	8156											
ATAD3A	55210	broad.mit.edu	37	chr1	1459309	1459309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggaacatcctgatgtacGggccaccaggcaccgggaag	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1459309	T	T	1459309	3	4	9	1	0	0	0	0	1	0	0	0	1077	1116	39	1	1236	1	ATAD3A	1	1459309	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	116917	1459309	247791312	6	8157											
GNB1	2782	broad.mit.edu	37	chr1	1756837	1756837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcacacacaactacatactCgaatctggttcttaagttgc	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1756837	A	A	1756837	3	1	9	1	0	0	0	0	1	0	0	0	6579	898	31	3	1002	3	GNB1	1	1756837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	297528	1756837	247493784	7	8158											
PRKCZ	5590	broad.mit.edu	37	chr1	2087418	2087418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcctcattaccactccCtggtttctatttcaggatat	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2087418	A	A	2087418	1	1	9	0	1	0	0	0	0	0	0	0	12623	696	24	2		2	PRKCZ	1	2087418	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	330581	2087418	247163203	8	8159											
C1orf93	127281	broad.mit.edu	37	chr1	2519977	2519977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattgactcaggctgtaccCactcctgacaggccaaggct	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2519977	A	A	2519977	1	1	9	0	1	0	0	0	0	0	0	0	2092	609	21	2		2	C1orf93	1	2519977	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	432559	2519977	246730644	9	8160											
ACTRT2	140625	broad.mit.edu	37	chr1	2938728	2938728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcctggtggtggacagcGgggatgcggtcacctgcact	18	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2938728	T	T	2938728	3	4	9	1	0	0	0	0	1	0	0	0	219	1116	39	1	480	1	ACTRT2	1	2938728	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	418751	2938728	246311893	10	8161											
MEGF6	1953	broad.mit.edu	37	chr1	3424408	3424408	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggggcagcggcaggccccCgtgacagagtcgcaggtccc	18	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3424408	A	A	3424408	2	1	9	1	0	0	0	0	0	0	0	1	9555	639	23	1		1	MEGF6	1	3424408	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	485680	3424408	245826213	11	8162											
KIAA0562	9731	broad.mit.edu	37	chr1	3750458	3750458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctgtgacgcggaggcGggcagaagaatctccagttc	15	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3750458	T	T	3750458	3	4	9	1	0	0	0	0	1	0	0	0	8254	1116	39	1	1194	1	KIAA0562	1	3750458	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	326050	3750458	245500163	12	8163											
KIAA0562	9731	broad.mit.edu	37	chr1	3756242	3756242	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccttttggacagcttccCgttttctttcatctaatttt	5	10	3	0	rs150150041		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3756242	A	A	3756242	3	1	9	1	0	0	0	0	1	0	0	0	8254	652	23	1	2176	1	KIAA0562	1	3756242	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5784	3756242	245494379	13	8164											
C1orf174	339448	broad.mit.edu	37	chr1	3807169	3807169	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccaaagaaccggctcacGggcattggctgattgctgtc	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3807169	T	T	3807169	2	4	9	1	0	0	0	0	0	0	0	1	2035	1103	39	1		1	C1orf174	1	3807169	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50927	3807169	245443452	14	8165											
CHD5	26038	broad.mit.edu	37	chr1	6196482	6196482	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgatgaggaagcaacggccGagcaggtctcacagccagga	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6196482	T	T	6196482	1	4	9	0	1	0	0	0	0	0	0	0	3359	1073	37	3		3	CHD5	1	6196482	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2389313	6196482	243054139	15	8166											
RNF207	388591	broad.mit.edu	37	chr1	6272764	6272764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgggaggaagcctatcagcGagtggctaatgagcaggaga	16	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6272764	T	T	6272764	3	4	9	1	0	0	0	0	1	0	0	0	13585	1058	37	3	1559	3	RNF207	1	6272764	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	76282	6272764	242977857	16	8167											
TNFRSF25	8718	broad.mit.edu	37	chr1	6524642	6524642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtggcggtgcagggcccCgcagtctaggcatggttggc	18	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6524642	A	A	6524642	3	1	9	1	0	0	0	0	1	0	0	0	16419	652	23	1	879	1	TNFRSF25	1	6524642	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	251878	6524642	242725979	17	8168											
PLEKHG5	57449	broad.mit.edu	37	chr1	6531636	6531636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcgccatcacgctagccCacagcctgcggtgcagctgc	12	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6531636	A	A	6531636	3	1	9	1	0	0	0	0	1	0	0	0	12168	595	21	2	1867	2	PLEKHG5	1	6531636	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6994	6531636	242718985	18	8169											
NOL9	79707	broad.mit.edu	37	chr1	6604941	6604941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgactttccaacatcctGggatccacaaactagaatga	7	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6604941	T	T	6604941	3	4	9	1	0	0	0	0	1	0	0	0	10623	1357	47	2	1218	2	NOL9	1	6604941	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73305	6604941	242645680	19	8170											
NOL9	79707	broad.mit.edu	37	chr1	6610486	6610486	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagatttgagcaaattccGggcttcccttttcagttcct	8	10	1	2	rs148133108		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6610486	T	T	6610486	2	4	9	1	0	0	0	0	0	0	0	1	10623	1115	39	1		1	NOL9	1	6610486	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5545	6610486	242640135	20	8171											
DNAJC11	55735	broad.mit.edu	37	chr1	6705987	6705987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaggacagtggtcaggccGggtcggattccacgggatga	17	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6705987	T	T	6705987	2	4	9	1	0	0	0	0	0	0	0	1	4670	1103	39	1		1	DNAJC11	1	6705987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	95501	6705987	242544634	21	8172											
CAMTA1	23261	broad.mit.edu	37	chr1	7724953	7724953	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcaacgacttcatctcCgtggaggggggcagcagcac	13	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7724953	A	A	7724953	2	1	9	1	0	0	0	0	0	0	0	1	2639	639	23	1		1	CAMTA1	1	7724953	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1018966	7724953	241525668	22	8173											
CAMTA1	23261	broad.mit.edu	37	chr1	7811313	7811313	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttatccagagcaaattcCgaagttactatgaacaaaaa	5	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7811313	A	A	7811313	2	1	9	1	0	0	0	0	0	0	0	1	2639	644	23	1		1	CAMTA1	1	7811313	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	86360	7811313	241439308	23	8174											
UTS2	10911	broad.mit.edu	37	chr1	7913446	7913446	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agacgtggatttatgagtccGagcagaagtgacgcagagca	14	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7913446	T	T	7913446	1	4	9	0	1	0	0	0	0	0	0	0	17231	1057	37	3		3	UTS2	1	7913446	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	102133	7913446	241337175	24	8175											
UTS2	10911	broad.mit.edu	37	chr1	7913587	7913587	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggattaaaacgtaaaacCagctatttcctttaaaacag	6	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7913587	A	A	7913587	1	1	9	0	1	0	0	0	0	0	0	0	17231	609	21	2		2	UTS2	1	7913587	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	141	7913587	241337034	25	8176											
SLC45A1	50651	broad.mit.edu	37	chr1	8397957	8397957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggggaccccaaggcccCgcacacatcagaggcgtatc	12	15	2	1	rs145885405		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8397957	A	A	8397957	3	1	9	1	0	0	0	0	1	0	0	0	14754	652	23	1	1701	1	SLC45A1	1	8397957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	484370	8397957	240852664	26	8177											
SLC45A1	50651	broad.mit.edu	37	chr1	8399690	8399690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgctctgcataacctacGggattttattttccaccctg	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8399690	T	T	8399690	3	4	9	1	0	0	0	0	1	0	0	0	14754	1116	39	1	1938	1	SLC45A1	1	8399690	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1733	8399690	240850931	27	8178											
RERE	473	broad.mit.edu	37	chr1	8420755	8420755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgtggcgccggcagctGggggatgggagtggtaggcg	23	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8420755	T	T	8420755	3	4	9	1	0	0	0	0	1	0	0	0	13339	1357	47	2	1912	2	RERE	1	8420755	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21065	8420755	240829866	28	8179											
RERE	473	broad.mit.edu	37	chr1	8684418	8684418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacggtgtgtttggcctcCgactctcgatatacacacag	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8684418	A	A	8684418	3	1	9	1	0	0	0	0	1	0	0	0	13339	652	23	1	4437	1	RERE	1	8684418	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	263663	8684418	240566203	29	8180											
RERE	473	broad.mit.edu	37	chr1	8716118	8716118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataacgagacttttttttcGgtggtttcttcttattcttc	6	8	3	1	rs139888880	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8716118	T	T	8716118	3	4	9	1	0	0	0	0	1	0	0	0	13339	1116	39	1	4549	1	RERE	1	8716118	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31700	8716118	240534503	30	8181											
RERE	473	broad.mit.edu	37	chr1	8716400	8716400	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcacggctaggcctcCgtgaaaggtagacagtaagc	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8716400	A	A	8716400	1	1	9	0	1	0	0	0	0	0	0	0	13339	667	23	1		1	RERE	1	8716400	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	282	8716400	240534221	31	8182											
ENO1	2023	broad.mit.edu	37	chr1	8924043	8924043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccttggcgatcctctttGggttggtcactgtgagatca	13	10	3	1	rs11544514		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8924043	T	T	8924043	3	4	9	1	0	0	0	0	1	0	0	0	5163	1348	47	2	346	2	ENO1	1	8924043	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	207643	8924043	240326578	32	8183											
ENO1	2023	broad.mit.edu	37	chr1	8927384	8927384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgctgtactgccctgaGggttgtattctgcaccatct	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8927384	T	T	8927384	1	4	9	0	1	0	0	0	0	0	0	0	5163	1015	35	2		2	ENO1	1	8927384	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3341	8927384	240323237	33	8184											
SLC2A7	155184	broad.mit.edu	37	chr1	9064776	9064776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttactccctggaggccCggtggagcgggttggggaag	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9064776	A	A	9064776	1	1	9	0	1	0	0	0	0	0	0	0	14664	667	23	1		1	SLC2A7	1	9064776	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	137392	9064776	240185845	34	8185											
H6PD	9563	broad.mit.edu	37	chr1	9323916	9323916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagccctgtgcgggagcGggacgcccactccgtcctct	12	17	1	0	rs148202091		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9323916	T	T	9323916	3	4	9	1	0	0	0	0	1	0	0	0	7002	1116	39	1	1378	1	H6PD	1	9323916	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	259140	9323916	239926705	35	8186											
CLSTN1	22883	broad.mit.edu	37	chr1	9795622	9795622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggccttatccaattcccCgaggtcttctccctccaagg	7	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9795622	A	A	9795622	3	1	9	1	0	0	0	0	1	0	0	0	3593	652	23	1	1187	1	CLSTN1	1	9795622	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	471706	9795622	239454999	36	8187											
UBE4B	10277	broad.mit.edu	37	chr1	10190527	10190527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccaccggcctgttcagcGgcttgactggctcttccatc	9	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10190527	T	T	10190527	1	4	9	0	1	0	0	0	0	0	0	0	17009	1131	39	1		1	UBE4B	1	10190527	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	394905	10190527	239060094	37	8188											
KIF1B	23095	broad.mit.edu	37	chr1	10394611	10394611	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcaatctgctgtatccCgtgcccctgatccacagggt	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10394611	A	A	10394611	2	1	9	1	0	0	0	0	0	0	0	1	8354	639	23	1		1	KIF1B	1	10394611	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	204084	10394611	238856010	38	8189											
PGD	5226	broad.mit.edu	37	chr1	10479705	10479705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctcagcgggattacttcGgggctcacacctatgaactc	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10479705	T	T	10479705	3	4	9	1	0	0	0	0	1	0	0	0	11882	1116	39	1	1401	1	PGD	1	10479705	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85094	10479705	238770916	39	8190											
CASZ1	54897	broad.mit.edu	37	chr1	10725314	10725314	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagctccaggccctcgcGggcaatccgccccaacacgg	12	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10725314	T	T	10725314	3	4	9	1	0	0	0	0	1	0	0	0	2711	1116	39	1	5020	1	CASZ1	1	10725314	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	245609	10725314	238525307	40	8191											
TARDBP	23435	broad.mit.edu	37	chr1	11080565	11080565	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgactgaggatgagctgcGggagttcttctctcagtacg	13	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11080565	C	C	11080565	3	2	9	1	0	0	0	0	1	0	0	0	15676	1116	39	4	637	4	TARDBP	1	11080565	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	355251	11080565	238170056	41	8192											
TARDBP	23435	broad.mit.edu	37	chr1	11082645	11082645	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcatccaatgcagggtcGggcagtggttttaatggagg	15	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11082645	T	T	11082645	2	4	9	1	0	0	0	0	0	0	0	1	15676	1103	39	1		1	TARDBP	1	11082645	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2080	11082645	238167976	42	8193											
EXOSC10	5394	broad.mit.edu	37	chr1	11131024	11131024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcctcctttgcctgttccCgggcagctgcaagggagaga	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11131024	A	A	11131024	3	1	9	1	0	0	0	0	1	0	0	0	5356	652	23	1	428	1	EXOSC10	1	11131024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48379	11131024	238119597	43	8194											
EXOSC10	5394	broad.mit.edu	37	chr1	11134326	11134326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggactccatgatgttctGggcttttttctgtgcaactg	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11134326	T	T	11134326	3	4	9	1	0	0	0	0	1	0	0	0	5356	1357	47	2	645	2	EXOSC10	1	11134326	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3302	11134326	238116295	44	8195											
EXOSC10	5394	broad.mit.edu	37	chr1	11142887	11142887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtttactacatacaaccCaaagtctttctgtagccatt	4	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11142887	A	A	11142887	3	1	9	1	0	0	0	0	1	0	0	0	5356	594	21	2	1583	2	EXOSC10	1	11142887	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8561	11142887	238107734	45	8196											
EXOSC10	5394	broad.mit.edu	37	chr1	11151013	11151013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagacctgtacacccttcCtggtttttgcatcaaataaa	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11151013	A	A	11151013	1	1	9	0	1	0	0	0	0	0	0	0	5356	696	24	2		2	EXOSC10	1	11151013	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8126	11151013	238099608	46	8197											
EXOSC10	5394	broad.mit.edu	37	chr1	11151170	11151170	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaaacttgagctgaggtcGgatgatattttttgcatgaa	11	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11151170	T	T	11151170	2	4	9	1	0	0	0	0	0	0	0	1	5356	1124	39	1		1	EXOSC10	1	11151170	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	157	11151170	238099451	47	8198											
MTOR	2475	broad.mit.edu	37	chr1	11174840	11174840	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taactgtcctgatcccatttGgaagcagctcgttcccgata	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11174840	C	C	11174840	1	2	9	0	1	0	0	0	0	0	0	0	10048	1363	47	4		4	MTOR	1	11174840	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23670	11174840	238075781	48	8199											
MTOR	2475	broad.mit.edu	37	chr1	11273616	11273616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattgaggtgttcatgaccCagaattcctacaaagagaga	10	7	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11273616	A	A	11273616	3	1	9	1	0	0	0	0	1	0	0	0	10048	595	21	2	4676	2	MTOR	1	11273616	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98776	11273616	237977005	49	8200											
CLCN6	1185	broad.mit.edu	37	chr1	11888644	11888644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagaggcttgcaaagtacCgtatgcgaaacgtgcacccg	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11888644	A	A	11888644	3	1	9	1	0	0	0	0	1	0	0	0	3498	652	23	1	1140	1	CLCN6	1	11888644	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	615028	11888644	237361977	50	8201											
PLOD1	5351	broad.mit.edu	37	chr1	12030751	12030751	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accgcatccagggtggctacGagaacgtgccgactattgac	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12030751	T	T	12030751	4	4	9	1	0	0	0	0	0	1	0	0	12196	1059	37	3	1846	3	PLOD1	1	12030751	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	142107	12030751	237219870	51	8202											
VPS13D	55187	broad.mit.edu	37	chr1	12387911	12387911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgaactcaccttttccCgtgagtgttgtactggtttt	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12387911	A	A	12387911	3	1	9	1	0	0	0	0	1	0	0	0	17319	666	23	1	8335	1	VPS13D	1	12387911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	357160	12387911	236862710	52	8203											
VPS13D	55187	broad.mit.edu	37	chr1	12416658	12416658	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaaaggctataatatatcCgtgtaagtagaaatatactg	8	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12416658	G	G	12416658	1	3	9	0	1	0	0	0	0	0	0	0	17319	667	23	4		4	VPS13D	1	12416658	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28747	12416658	236833963	53	8204											
VPS13D	55187	broad.mit.edu	37	chr1	12429617	12429617	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattatgcctgggacgaaccCaccttgccaccttttatcac	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12429617	A	A	12429617	2	1	9	1	0	0	0	0	0	0	0	1	17319	581	21	2		2	VPS13D	1	12429617	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12959	12429617	236821004	54	8205											
DHRS3	9249	broad.mit.edu	37	chr1	12628303	12628303	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccaatggacaggtgctcGggtgtgtgcccaggtgctgt	16	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12628303	T	T	12628303	1	4	9	0	1	0	0	0	0	0	0	0	4531	1131	39	1		1	DHRS3	1	12628303	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	198686	12628303	236622318	55	8206											
PRAMEF1	65121	broad.mit.edu	37	chr1	12854285	12854285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagatacctcttccagtGggtttaccaaaggagaggtt	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12854285	T	T	12854285	3	4	9	1	0	0	0	0	1	0	0	0	12526	1357	47	2	515	2	PRAMEF1	1	12854285	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	225982	12854285	236396336	56	8207											
PRAMEF11	440560	broad.mit.edu	37	chr1	12884887	12884887	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacagaacaagatcctcttGgggtgccttaagtgcctcac	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12884887	T	T	12884887	2	4	9	1	0	0	0	0	0	0	0	1	12528	1335	47	2		2	PRAMEF11	1	12884887	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30602	12884887	236365734	57	8208											
PRAMEF11	440560	broad.mit.edu	37	chr1	12887382	12887382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctaggttcaccattttcaGgatgcttctgatattgcgga	10	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12887382	T	T	12887382	3	4	9	1	0	0	0	0	1	0	0	0	12528	991	35	2	843	2	PRAMEF11	1	12887382	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2495	12887382	236363239	58	8209											
LOC649330	649330	broad.mit.edu	37	chr1	12908011	12908011	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttatgaacagagcagccCgcaattttgccatacttgga	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12908011	A	A	12908011	2	1	9	1	0	0	0	0	0	0	0	1	8969	639	23	1		1	LOC649330	1	12908011	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20629	12908011	236342610	59	8210											
PRAMEF2	65122	broad.mit.edu	37	chr1	12919114	12919114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgaaagcattgctggaaGggcttcatatgctgcttaca	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12919114	T	T	12919114	3	4	9	1	0	0	0	0	1	0	0	0	12537	1000	35	2	252	2	PRAMEF2	1	12919114	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11103	12919114	236331507	60	8211											
PRAMEF2	65122	broad.mit.edu	37	chr1	12921167	12921167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccagttcccaagcctcGgttacctaaagcatctgaat	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12921167	T	T	12921167	3	4	9	1	0	0	0	0	1	0	0	0	12537	1116	39	1	968	1	PRAMEF2	1	12921167	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2053	12921167	236329454	61	8212											
PRAMEF4	400735	broad.mit.edu	37	chr1	12943249	12943249	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacttccagaggacaaaccCagagaaaaggcatctctctc	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12943249	G	G	12943249	1	3	9	0	1	0	0	0	0	0	0	0	12541	609	21	4		4	PRAMEF4	1	12943249	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22082	12943249	236307372	62	8213											
PRAMEF6	440561	broad.mit.edu	37	chr1	13001267	13001267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgtcctctcatccttGgacagtcctgcactggtgtt	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13001267	T	T	13001267	3	4	9	1	0	0	0	0	1	0	0	0	12543	1348	47	2	1022	2	PRAMEF6	1	13001267	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58018	13001267	236249354	63	8214											
PRAMEF6	440561	broad.mit.edu	37	chr1	13001316	13001316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggcattgaggaagcaccCacgggccatagcttcagacc	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13001316	A	A	13001316	3	1	9	1	0	0	0	0	1	0	0	0	12543	594	21	2	1071	2	PRAMEF6	1	13001316	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	13001316	236249305	64	8215											
PRAMEF5	343068	broad.mit.edu	37	chr1	13052829	13052829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttggggtgccttaagtccCtcactctgttcatcagctca	8	13	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13052829	A	A	13052829	1	1	9	0	1	0	0	0	0	0	0	0	12542	696	24	2		2	PRAMEF5	1	13052829	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	51513	13052829	236197792	65	8216											
PRDM2	7799	broad.mit.edu	37	chr1	14107077	14107077	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatcctgacctcggtccGggctctggtttccctgcccc	10	18	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14107077	T	T	14107077	2	4	9	1	0	0	0	0	0	0	0	1	12564	1103	39	1		1	PRDM2	1	14107077	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1054248	14107077	235143544	66	8217											
CTRC	11330	broad.mit.edu	37	chr1	15769844	15769844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgactcccaactcacagccCgagccccttagcctgagctt	7	18	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15769844	A	A	15769844	1	1	9	0	1	0	0	0	0	0	0	0	4061	667	23	1		1	CTRC	1	15769844	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1662767	15769844	233480777	67	8218											
CTRC	11330	broad.mit.edu	37	chr1	15770006	15770006	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagaaggactccctgctccCcaaggactacccctgctatg	9	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15770006	G	G	15770006	3	3	9	1	0	0	0	0	1	0	0	0	4061	623	22	4	467	4	CTRC	1	15770006	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	162	15770006	233480615	68	8219											
DNAJC16	23341	broad.mit.edu	37	chr1	15890475	15890475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggtggtgtataaaaccCtggaagacccttggattggg	15	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15890475	A	A	15890475	3	1	9	1	0	0	0	0	1	0	0	0	4675	680	24	2	1424	2	DNAJC16	1	15890475	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120469	15890475	233360146	69	8220											
DNAJC16	23341	broad.mit.edu	37	chr1	15890494	15890494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaagacccttggattgGgagtgagagtgacaaattta	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15890494	T	T	15890494	3	4	9	1	0	0	0	0	1	0	0	0	4675	1232	43	2	1443	2	DNAJC16	1	15890494	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	15890494	233360127	70	8221											
DNAJC16	23341	broad.mit.edu	37	chr1	15890604	15890604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaccgatgaacttgccCctgtgagcatcggggctggg	14	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15890604	A	A	15890604	3	1	9	1	0	0	0	0	1	0	0	0	4675	623	22	2	1553	2	DNAJC16	1	15890604	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110	15890604	233360017	71	8222											
DDI2	84301	broad.mit.edu	37	chr1	15960018	15960018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtctgttttctgctgatcCctttgaccttgaagctcagg	9	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15960018	A	A	15960018	3	1	9	1	0	0	0	0	1	0	0	0	4362	623	22	2	604	2	DDI2	1	15960018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69414	15960018	233290603	72	8223											
RSC1A1	6248	broad.mit.edu	37	chr1	15986489	15986489	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtctgccctatcaagccCagtgactcagatcgcattga	8	13	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15986489	A	A	15986489	2	1	9	1	0	0	0	0	0	0	0	1	13809	581	21	2		2	RSC1A1	1	15986489	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26471	15986489	233264132	73	8224											
SPEN	23013	broad.mit.edu	37	chr1	16256528	16256528	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggttctcccagtgtcCgacatggttccttccatgaa	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16256528	A	A	16256528	2	1	9	1	0	0	0	0	0	0	0	1	15156	644	23	1		1	SPEN	1	16256528	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	270039	16256528	232994093	74	8225											
SPEN	23013	broad.mit.edu	37	chr1	16257949	16257949	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgccaagcctccaactccCggggcctcgttttcccaggc	10	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16257949	G	G	16257949	2	3	9	1	0	0	0	0	0	0	0	1	15156	639	23	4		4	SPEN	1	16257949	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1421	16257949	232992672	75	8226											
SPEN	23013	broad.mit.edu	37	chr1	16260261	16260261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaggcaggaggagccacGggctcagtctactccatctc	11	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16260261	T	T	16260261	3	4	9	1	0	0	0	0	1	0	0	0	15156	1116	39	1	7568	1	SPEN	1	16260261	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2312	16260261	232990360	76	8227											
ZBTB17	7709	broad.mit.edu	37	chr1	16268518	16268518	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggtctctgccagtgcGggctggccctcagccccgtc	16	15	2	0	rs148195969		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16268518	T	T	16268518	2	4	9	1	0	0	0	0	0	0	0	1	17653	1103	39	1		1	ZBTB17	1	16268518	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8257	16268518	232982103	77	8228											
CLCNKA	1187	broad.mit.edu	37	chr1	16352615	16352615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctaaggttctggaatccCggagctgaagaccatgttgg	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16352615	A	A	16352615	3	1	9	1	0	0	0	0	1	0	0	0	3500	652	23	1	385	1	CLCNKA	1	16352615	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84097	16352615	232898006	78	8229											
NBPF1	55672	broad.mit.edu	37	chr1	16891304	16891304	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaattgctgaaagttacctGgggcatggtgggttttgatc	13	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16891304	T	T	16891304	2	4	9	1	0	0	0	0	0	0	0	1	10286	1335	47	2		2	NBPF1	1	16891304	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	538689	16891304	232359317	79	8230											
NBPF1	55672	broad.mit.edu	37	chr1	16891654	16891654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcccaatatcatttgtccCgagtttgtgcaaacagttat	6	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16891654	A	A	16891654	1	1	9	0	1	0	0	0	0	0	0	0	10286	667	23	1		1	NBPF1	1	16891654	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	350	16891654	232358967	80	8231											
NBPF1	55672	broad.mit.edu	37	chr1	16893597	16893597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatctctcagctcagtaaGggccatttgcagtaggaata	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16893597	T	T	16893597	1	4	9	0	1	0	0	0	0	0	0	0	10286	1015	35	2		2	NBPF1	1	16893597	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1943	16893597	232357024	81	8232											
NBPF1	55672	broad.mit.edu	37	chr1	16893665	16893665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttatcaccttcatagaaaGgtactcaccatccatgtcaa	4	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16893665	T	T	16893665	1	4	9	0	1	0	0	0	0	0	0	0	10286	1015	35	2		2	NBPF1	1	16893665	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	68	16893665	232356956	82	8233											
NBPF1	55672	broad.mit.edu	37	chr1	16893745	16893745	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacttctgtagggctggcatGagtcagtcagttcaagataa	11	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16893745	T	T	16893745	4	4	9	1	0	0	0	0	0	1	0	0	10286	1294	45	3	676	3	NBPF1	1	16893745	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	16893745	232356876	83	8234											
NBPF1	55672	broad.mit.edu	37	chr1	16894602	16894602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacattcctctgtccaatcCtaacacaggtacatcagtct	4	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16894602	A	A	16894602	1	1	9	0	1	0	0	0	0	0	0	0	10286	696	24	2		2	NBPF1	1	16894602	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	857	16894602	232356019	84	8235											
NBPF1	55672	broad.mit.edu	37	chr1	16895523	16895523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagattatggggtctacctGggccatgaactggagcttta	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16895523	T	T	16895523	1	4	9	0	1	0	0	0	0	0	0	0	10286	1363	47	2		2	NBPF1	1	16895523	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	921	16895523	232355098	85	8236											
NBPF1	55672	broad.mit.edu	37	chr1	16902734	16902734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcataagcctggggttttGggtcatcagggcctatggcc	13	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902734	T	T	16902734	1	4	9	0	1	0	0	0	0	0	0	0	10286	1363	47	2		2	NBPF1	1	16902734	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7211	16902734	232347887	86	8237											
NBPF1	55672	broad.mit.edu	37	chr1	16902777	16902777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacctgggctgagcttttGgacaaggtgctgtgccagtc	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902777	T	T	16902777	3	4	9	1	0	0	0	0	1	0	0	0	10286	1357	47	2	1364	2	NBPF1	1	16902777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43	16902777	232347844	87	8238											
NBPF1	55672	broad.mit.edu	37	chr1	16902857	16902857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacttgtctggctcatccGgagtgaggagggcctggaga	18	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902857	T	T	16902857	3	4	9	1	0	0	0	0	1	0	0	0	10286	1116	39	1	1444	1	NBPF1	1	16902857	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	16902857	232347764	88	8239											
NBPF1	55672	broad.mit.edu	37	chr1	16902914	16902914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggcatctctcccttccCgtaacttctcccttaactgg	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16902914	A	A	16902914	3	1	9	1	0	0	0	0	1	0	0	0	10286	652	23	1	1501	1	NBPF1	1	16902914	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	16902914	232347707	89	8240											
NBPF1	55672	broad.mit.edu	37	chr1	16908261	16908261	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcagcctctctctggaCtttggcagctgtctccccca	9	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16908261	T	T	16908261	1	4	9	0	1	0	0	0	0	0	0	0	10286	580	20	4		4	NBPF1	1	16908261	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5347	16908261	232342360	90	8241											
NBPF1	55672	broad.mit.edu	37	chr1	16913610	16913610	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgtctacaaccagagttGagttgactttgtcttcctca	7	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16913610	T	T	16913610	4	4	9	1	0	0	0	0	0	1	0	0	10286	1294	45	3	2787	3	NBPF1	1	16913610	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5349	16913610	232337011	91	8242											
NBPF1	55672	broad.mit.edu	37	chr1	16914204	16914204	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accacccattacttgctcccGagtattcagtgttacctggg	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16914204	T	T	16914204	1	4	9	0	1	0	0	0	0	0	0	0	10286	1073	37	3		3	NBPF1	1	16914204	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	594	16914204	232336417	92	8243											
NBPF1	55672	broad.mit.edu	37	chr1	16914355	16914355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcaagcacagtcagccCaatgtgcacagagacatgaa	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16914355	A	A	16914355	1	1	9	0	1	0	0	0	0	0	0	0	10286	609	21	2		2	NBPF1	1	16914355	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	151	16914355	232336266	93	8244											
NBPF1	55672	broad.mit.edu	37	chr1	16918357	16918357	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactgtatttcttctgtcGgttggccaggaagccggcca	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16918357	T	T	16918357	2	4	9	1	0	0	0	0	0	0	0	1	10286	1124	39	1		1	NBPF1	1	16918357	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4002	16918357	232332264	94	8245											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17958913	17958913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaagtccaaggagcgtcGggtcttcctgctcaacgaca	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17958913	T	T	17958913	3	4	9	1	0	0	0	0	1	0	0	0	897	1116	39	1	1740	1	ARHGEF10L	1	17958913	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1040556	17958913	231291708	95	8246											
IGSF21	84966	broad.mit.edu	37	chr1	18618247	18618247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaccttattctcaggatGggggctgtccttcttctggg	11	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18618247	T	T	18618247	1	4	9	0	1	0	0	0	0	0	0	0	7669	1363	47	2		2	IGSF21	1	18618247	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	659334	18618247	230632374	96	8247											
UBR4	23352	broad.mit.edu	37	chr1	19444333	19444333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacacagaacggtacttccGggttattacacaccaggcag	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19444333	T	T	19444333	3	4	9	1	0	0	0	0	1	0	0	0	17030	1116	39	1	5078	1	UBR4	1	19444333	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	826086	19444333	229806288	97	8248											
UBR4	23352	broad.mit.edu	37	chr1	19468194	19468194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcctggctttcctgacGgatgtgaccaccattcggga	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19468194	T	T	19468194	3	4	9	1	0	0	0	0	1	0	0	0	17030	1116	39	1	7498	1	UBR4	1	19468194	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23861	19468194	229782427	98	8249											
KIAA0090	23065	broad.mit.edu	37	chr1	19563614	19563614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggggaaataaaaaaatGggttgaatgaggtctactta	12	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19563614	T	T	19563614	1	4	9	0	1	0	0	0	0	0	0	0	8223	1363	47	2		2	KIAA0090	1	19563614	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	95420	19563614	229687007	99	8250											
AKR7L	246181	broad.mit.edu	37	chr1	19596038	19596038	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctgggcatctgtgggtcGggaataggctgagtcagggc	20	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19596038	C	C	19596038	1	2	9	0	1	0	0	0	0	0	0	0	477	1131	39	4		4	AKR7L	1	19596038	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32424	19596038	229654583	100	8251											
CAPZB	832	broad.mit.edu	37	chr1	19683221	19683221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggaggtcaacttgtaatGggcggtgcgaccgctggatt	16	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19683221	T	T	19683221	3	4	9	1	0	0	0	0	1	0	0	0	2669	1348	47	2	338	2	CAPZB	1	19683221	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87183	19683221	229567400	101	8252											
HTR6	3362	broad.mit.edu	37	chr1	20005500	20005500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaaccccatcatctaccCactcttcatgcgggacttca	5	16	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20005500	A	A	20005500	3	1	9	1	0	0	0	0	1	0	0	0	7521	594	21	2	972	2	HTR6	1	20005500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	322279	20005500	229245121	102	8253											
PLA2G5	5322	broad.mit.edu	37	chr1	20411378	20411378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtagtaagtgctggcccCgtgaccttcgaatgaacttt	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20411378	A	A	20411378	1	1	9	0	1	0	0	0	0	0	0	0	12102	667	23	1		1	PLA2G5	1	20411378	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	405878	20411378	228839243	103	8254											
MUL1	79594	broad.mit.edu	37	chr1	20828588	20828588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggttcgattccacacCatcttgtgctcctgaagtgt	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20828588	A	A	20828588	3	1	9	1	0	0	0	0	1	0	0	0	10078	594	21	2	763	2	MUL1	1	20828588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	417210	20828588	228422033	104	8255											
EIF4G3	8672	broad.mit.edu	37	chr1	21183896	21183896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttaaatgtcagactcacCttagtgatttttaggaattt	6	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21183896	A	A	21183896	3	1	9	1	0	0	0	0	1	0	0	0	5080	695	24	2	1638	2	EIF4G3	1	21183896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	355308	21183896	228066725	105	8256											
EIF4G3	8672	broad.mit.edu	37	chr1	21191284	21191284	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgagattcatggggtcaGaatccccgtgagaatctgat	11	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21191284	A	A	21191284	1	1	9	0	1	0	0	0	0	0	0	0	5080	957	33	4		4	EIF4G3	1	21191284	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7388	21191284	228059337	106	8257											
ECE1	1889	broad.mit.edu	37	chr1	21563331	21563331	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttaatctccaggatgatctCggtggcctgaggagatacac	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21563331	A	A	21563331	4	1	9	1	0	0	0	0	0	1	0	0	4929	893	31	3	948	3	ECE1	1	21563331	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	372047	21563331	227687290	107	8258											
ECE1	1889	broad.mit.edu	37	chr1	21586832	21586832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcgttcatgcacgcacGgtagtatacttgcgcctttc	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21586832	T	T	21586832	3	4	9	1	0	0	0	0	1	0	0	0	4929	1116	39	1	1825	1	ECE1	1	21586832	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23501	21586832	227663789	108	8259											
NBPF3	84224	broad.mit.edu	37	chr1	21798144	21798144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagggagagatgcctccCgctcattgaatcagcatctc	11	11	3	2	rs142355608	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21798144	A	A	21798144	3	1	9	1	0	0	0	0	1	0	0	0	10292	652	23	1	543	1	NBPF3	1	21798144	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	211312	21798144	227452477	109	8260											
USP48	84196	broad.mit.edu	37	chr1	22056409	22056409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctatagaaaacaatttcCaaaatatacacccaagacac	5	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22056409	A	A	22056409	1	1	9	0	1	0	0	0	0	0	0	0	17206	609	21	2		2	USP48	1	22056409	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	258265	22056409	227194212	110	8261											
HSPG2	3339	broad.mit.edu	37	chr1	22173921	22173921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgatgttgttgttggccCggcacacatactcgcccgag	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22173921	A	A	22173921	3	1	9	1	0	0	0	0	1	0	0	0	7500	652	23	1	5229	1	HSPG2	1	22173921	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117512	22173921	227076700	111	8262											
HSPG2	3339	broad.mit.edu	37	chr1	22202203	22202203	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccatcagcaggtgctccCgtgtggctggctgcccatcg	14	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22202203	A	A	22202203	3	1	9	1	0	0	0	0	1	0	0	0	7500	652	23	1	10246	1	HSPG2	1	22202203	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28282	22202203	227048418	112	8263											
CELA3B	23436	broad.mit.edu	37	chr1	22310846	22310846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcagctcttacctgccCgaggtggtgctgggtgtgca	15	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22310846	A	A	22310846	1	1	9	0	1	0	0	0	0	0	0	0	3244	667	23	1		1	CELA3B	1	22310846	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	108643	22310846	226939775	113	8264											
CELA3A	10136	broad.mit.edu	37	chr1	22328210	22328210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctccttgtggccgttGgtaagaccccaacctgtctg	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22328210	T	T	22328210	3	4	9	1	0	0	0	0	1	0	0	0	3243	1362	47	2	45	2	CELA3A	1	22328210	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17364	22328210	226922411	114	8265											
CDC42	998	broad.mit.edu	37	chr1	22408189	22408189	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactctctccttgcacactaAcagtgttgtatttttttgtt	5	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22408189	G	G	22408189	1	3	9	0	1	0	0	0	0	0	0	0	3101	58	2	5		5	CDC42	1	22408189	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	79979	22408189	226842432	115	8266											
CDC42	998	broad.mit.edu	37	chr1	22413312	22413312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactgctgaaaagctggccCgtgacctgaaggctgtcaag	13	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22413312	A	A	22413312	3	1	9	1	0	0	0	0	1	0	0	0	3101	652	23	1	453	1	CDC42	1	22413312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5123	22413312	226837309	116	8267											
CDC42	998	broad.mit.edu	37	chr1	22413338	22413338	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaggctgtcaagtatgtGgagtgttctgcacttacaca	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22413338	T	T	22413338	2	4	9	1	0	0	0	0	0	0	0	1	3101	1335	47	2		2	CDC42	1	22413338	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	22413338	226837283	117	8268											
EPHB2	2048	broad.mit.edu	37	chr1	23111544	23111544	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaagcaggcttcgaggcCgttgagaatggcaccgtctg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23111544	A	A	23111544	2	1	9	1	0	0	0	0	0	0	0	1	5217	639	23	1		1	EPHB2	1	23111544	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	698206	23111544	226139077	118	8269											
KDM1A	23028	broad.mit.edu	37	chr1	23405509	23405509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgatagctgtgaataccCgctccacgagtcaaaccttt	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23405509	A	A	23405509	3	1	9	1	0	0	0	0	1	0	0	0	8192	652	23	1	1960	1	KDM1A	1	23405509	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	293965	23405509	225845112	119	8270											
KDM1A	23028	broad.mit.edu	37	chr1	23409764	23409764	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtgggctgcgagaagcGggaagaattgcagaccagtt	16	7	0	4	rs148163048		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23409764	T	T	23409764	2	4	9	1	0	0	0	0	0	0	0	1	8192	1103	39	1		1	KDM1A	1	23409764	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4255	23409764	225840857	120	8271											
HNRNPR	10236	broad.mit.edu	37	chr1	23640160	23640160	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaatatttcttctgtcacCgtagtagccaagtttctcac	5	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23640160	A	A	23640160	2	1	9	1	0	0	0	0	0	0	0	1	7339	639	23	1		1	HNRNPR	1	23640160	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	230396	23640160	225610461	121	8272											
TCEB3	6924	broad.mit.edu	37	chr1	24078931	24078931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtgttgccagacctccCgttacccgcgatacaggcca	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24078931	A	A	24078931	3	1	9	1	0	0	0	0	1	0	0	0	15803	652	23	1	1556	1	TCEB3	1	24078931	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	438771	24078931	225171690	122	8273											
LYPLA2	11313	broad.mit.edu	37	chr1	24120585	24120585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcatgaaatgaagaacGggatccctgccaatcgaatc	10	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24120585	T	T	24120585	3	4	9	1	0	0	0	0	1	0	0	0	9205	1116	39	1	350	1	LYPLA2	1	24120585	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41654	24120585	225130036	123	8274											
MYOM3	127294	broad.mit.edu	37	chr1	24388573	24388573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggtgcccgtccttatcCgatcaccactctccagacgt	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24388573	A	A	24388573	3	1	9	1	0	0	0	0	1	0	0	0	10187	652	23	1	536	1	MYOM3	1	24388573	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	267988	24388573	224862048	124	8275											
MYOM3	127294	broad.mit.edu	37	chr1	24392408	24392408	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagagaagtcccgttccCgtctctgggtcatactgacc	10	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24392408	A	A	24392408	2	1	9	1	0	0	0	0	0	0	0	1	10187	639	23	1		1	MYOM3	1	24392408	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3835	24392408	224858213	125	8276											
MYOM3	127294	broad.mit.edu	37	chr1	24394771	24394771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccatcttggagttgagcGgtgtacgaccctttgtcctc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24394771	T	T	24394771	2	4	9	1	0	0	0	0	0	0	0	1	10187	1103	39	1		1	MYOM3	1	24394771	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2363	24394771	224855850	126	8277											
MYOM3	127294	broad.mit.edu	37	chr1	24401774	24401774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgacagtatttgggtccCgttgagcagttgtttctcct	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24401774	A	A	24401774	1	1	9	0	1	0	0	0	0	0	0	0	10187	667	23	1		1	MYOM3	1	24401774	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7003	24401774	224848847	127	8278											
IL28RA	163702	broad.mit.edu	37	chr1	24484300	24484300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctggtcagttccttttGgggacagaggaacaagtcat	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24484300	T	T	24484300	3	4	9	1	0	0	0	0	1	0	0	0	7754	1357	47	2	683	2	IL28RA	1	24484300	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82526	24484300	224766321	128	8279											
C1orf201	90529	broad.mit.edu	37	chr1	24700252	24700252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtttttgacataaaccCggctcgagtacagacgttgt	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24700252	A	A	24700252	3	1	9	1	0	0	0	0	1	0	0	0	2047	652	23	1	509	1	C1orf201	1	24700252	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	215952	24700252	224550369	129	8280											
SRRM1	10250	broad.mit.edu	37	chr1	24975466	24975466	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcacaagaaaacatcgcGggaatcccttctgctttcct	8	12	1	1	rs144244065		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24975466	T	T	24975466	2	4	9	1	0	0	0	0	0	0	0	1	15286	1103	39	1		1	SRRM1	1	24975466	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	275214	24975466	224275155	130	8281											
SRRM1	10250	broad.mit.edu	37	chr1	24979112	24979112	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagacggcgccatagatccCgatcaaggtgagttgtggct	13	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24979112	A	A	24979112	2	1	9	1	0	0	0	0	0	0	0	1	15286	644	23	1		1	SRRM1	1	24979112	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3646	24979112	224271509	131	8282											
CLIC4	25932	broad.mit.edu	37	chr1	25167381	25167381	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atacctgtcccagtgataagGaggttgaaatagcatatagt	10	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25167381	T	T	25167381	4	4	9	1	0	0	0	0	0	1	0	0	3560	1175	41	3	737	3	CLIC4	1	25167381	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	188269	25167381	224083240	132	8283											
SYF2	25949	broad.mit.edu	37	chr1	25549896	25549896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcattataaggacgtctcCggctatatttgtctcgtttt	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25549896	A	A	25549896	3	1	9	1	0	0	0	0	1	0	0	0	15556	652	23	1	142	1	SYF2	1	25549896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	382515	25549896	223700725	133	8284											
SYF2	25949	broad.mit.edu	37	chr1	25549911	25549911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctccggctatatttgtctCgtttttcaatcctggggaaa	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25549911	A	A	25549911	3	1	9	1	0	0	0	0	1	0	0	0	15556	884	31	3	157	3	SYF2	1	25549911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	25549911	223700710	134	8285											
RHCE	6006	broad.mit.edu	37	chr1	25718646	25718646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgtctgcaataaaaccCagtaagagcagtgagtgtcg	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25718646	A	A	25718646	1	1	9	0	1	0	0	0	0	0	0	0	13434	609	21	2		2	RHCE	1	25718646	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	168735	25718646	223531975	135	8286											
C1orf135	79000	broad.mit.edu	37	chr1	26161671	26161671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgttgtgggcaatgaccCgctggccttgagaatcttca	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26161671	A	A	26161671	3	1	9	1	0	0	0	0	1	0	0	0	2019	652	23	1	190	1	C1orf135	1	26161671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	443025	26161671	223088950	136	8287											
PDIK1L	149420	broad.mit.edu	37	chr1	26448529	26448529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaaccagatcatccacCgagatcttaagcctgataac	5	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26448529	A	A	26448529	2	1	9	1	0	0	0	0	0	0	0	1	11767	644	23	1		1	PDIK1L	1	26448529	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	286858	26448529	222802092	137	8288											
CATSPER4	378807	broad.mit.edu	37	chr1	26524750	26524750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccctttggtgaagtcGgggtggggctcttttctctc	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26524750	T	T	26524750	1	4	9	0	1	0	0	0	0	0	0	0	2716	1131	39	1		1	CATSPER4	1	26524750	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	76221	26524750	222725871	138	8289											
CATSPER4	378807	broad.mit.edu	37	chr1	26524785	26524785	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctctgacaggttttttcCgtgtttggagtaacactctt	8	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26524785	A	A	26524785	2	1	9	1	0	0	0	0	0	0	0	1	2716	639	23	1		1	CATSPER4	1	26524785	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	26524785	222725836	139	8290											
DHDDS	79947	broad.mit.edu	37	chr1	26769333	26769333	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggcttatggatctggccCggcagaagttcagccgcttg	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26769333	A	A	26769333	2	1	9	1	0	0	0	0	0	0	0	1	4518	643	23	1		1	DHDDS	1	26769333	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	244548	26769333	222481288	140	8291											
ZDHHC18	84243	broad.mit.edu	37	chr1	27158891	27158891	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtagccctgtgccgcaGggagcccttggggtgtctgc	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27158891	C	C	27158891	1	2	9	0	1	0	0	0	0	0	0	0	17734	1015	35	4		4	ZDHHC18	1	27158891	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	389558	27158891	222091730	141	8292											
GPATCH3	63906	broad.mit.edu	37	chr1	27219262	27219262	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcatttggacagagtctcGggcatccttgtctccaccat	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27219262	T	T	27219262	2	4	9	1	0	0	0	0	0	0	0	1	6657	1124	39	1		1	GPATCH3	1	27219262	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60371	27219262	222031359	142	8293											
GPATCH3	63906	broad.mit.edu	37	chr1	27219899	27219899	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctctgtcatagtacacactCatgtccacatcccagtcatc	4	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27219899	A	A	27219899	3	1	9	1	0	0	0	0	1	0	0	0	6657	826	29	3	501	3	GPATCH3	1	27219899	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	637	27219899	222030722	143	8294											
GPATCH3	63906	broad.mit.edu	37	chr1	27223672	27223672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccttcttggactccttGgaaccctcctgaggacccca	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27223672	T	T	27223672	1	4	9	0	1	0	0	0	0	0	0	0	6657	1363	47	2		2	GPATCH3	1	27223672	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3773	27223672	222026949	144	8295											
GPATCH3	63906	broad.mit.edu	37	chr1	27223996	27223996	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggaggaacctgtcttGgggaactggagctgcagctg	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27223996	T	T	27223996	2	4	9	1	0	0	0	0	0	0	0	1	6657	1335	47	2		2	GPATCH3	1	27223996	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	324	27223996	222026625	145	8296											
C1orf172	126695	broad.mit.edu	37	chr1	27278386	27278386	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctttgagcttaacatcGgggtagctgaagctgctgcc	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27278386	T	T	27278386	2	4	9	1	0	0	0	0	0	0	0	1	2033	1103	39	1		1	C1orf172	1	27278386	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	54390	27278386	221972235	146	8297											
FAM46B	115572	broad.mit.edu	37	chr1	27332524	27332524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtggctggcacaacccCgtcagtgcctggagggcgcc	15	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27332524	A	A	27332524	3	1	9	1	0	0	0	0	1	0	0	0	5617	652	23	1	92	1	FAM46B	1	27332524	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54138	27332524	221918097	147	8298											
MAP3K6	9064	broad.mit.edu	37	chr1	27682187	27682187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtgtagatgaggtcatctCgagtggcataggtgagcaga	17	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27682187	A	A	27682187	3	1	9	1	0	0	0	0	1	0	0	0	9346	884	31	3	113	3	MAP3K6	1	27682187	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	349663	27682187	221568434	148	8299											
WASF2	10163	broad.mit.edu	37	chr1	27739101	27739101	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaggcaagttgtcctcGgagaaggaaggagaaggtga	19	4	0	3	rs138227175		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27739101	T	T	27739101	2	4	9	1	0	0	0	0	0	0	0	1	17380	1103	39	1		1	WASF2	1	27739101	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56914	27739101	221511520	149	8300											
AHDC1	27245	broad.mit.edu	37	chr1	27878163	27878163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggtggcggtgcaggcGggcggctcagtcggagccca	20	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27878163	T	T	27878163	3	4	9	1	0	0	0	0	1	0	0	0	412	1116	39	1	4351	1	AHDC1	1	27878163	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139062	27878163	221372458	150	8301											
STX12	23673	broad.mit.edu	37	chr1	28148860	28148860	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcctccgatcgttctccCgctgagctgttttcaagggc	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28148860	A	A	28148860	1	1	9	0	1	0	0	0	0	0	0	0	15456	667	23	1		1	STX12	1	28148860	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	270697	28148860	221101761	151	8302											
RPA2	6118	broad.mit.edu	37	chr1	28233734	28233734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgaacacttcatcaacCaaagtggcagaaagcagctg	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28233734	A	A	28233734	3	1	9	1	0	0	0	0	1	0	0	0	13648	593	21	2	663	2	RPA2	1	28233734	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84874	28233734	221016887	152	8303											
EYA3	2140	broad.mit.edu	37	chr1	28369004	28369004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacaaacaaggcaattaCgaaaaaccaactctataaga	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28369004	A	A	28369004	1	1	9	0	1	0	0	0	0	0	0	0	5373	551	19	3		3	EYA3	1	28369004	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	135270	28369004	220881617	153	8304											
PTAFR	5724	broad.mit.edu	37	chr1	28476561	28476561	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaaccacttcagtgacCgtatccgtggtggcccggga	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28476561	A	A	28476561	2	1	9	1	0	0	0	0	0	0	0	1	12829	639	23	1		1	PTAFR	1	28476561	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	107557	28476561	220774060	154	8305											
DNAJC8	22826	broad.mit.edu	37	chr1	28527753	28527753	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttctgtgcctgtgaccttGggcggtcactcacgttgctc	13	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28527753	T	T	28527753	1	4	9	0	1	0	0	0	0	0	0	0	4695	1363	47	2		2	DNAJC8	1	28527753	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	51192	28527753	220722868	155	8306											
DNAJC8	22826	broad.mit.edu	37	chr1	28527818	28527818	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggtccgatttttcttctCtttcttccccttcgtattgg	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28527818	A	A	28527818	4	1	9	1	0	0	0	0	0	1	0	0	4695	922	32	3	62	3	DNAJC8	1	28527818	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	28527818	220722803	156	8307											
SESN2	83667	broad.mit.edu	37	chr1	28598804	28598804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctccgcaggctgccgccCgccatcagtgttcttacctg	9	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28598804	A	A	28598804	3	1	9	1	0	0	0	0	1	0	0	0	14238	652	23	1	378	1	SESN2	1	28598804	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70986	28598804	220651817	157	8308											
PHACTR4	65979	broad.mit.edu	37	chr1	28800092	28800092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccaagcaataaacagtGgtacattgttatcaaaaccg	7	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28800092	T	T	28800092	3	4	9	1	0	0	0	0	1	0	0	0	11907	1348	47	2	922	2	PHACTR4	1	28800092	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	201288	28800092	220450529	158	8309											
PHACTR4	65979	broad.mit.edu	37	chr1	28800624	28800624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagcagtacgctgggtcGgaccaggtctcttcccatca	12	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28800624	T	T	28800624	3	4	9	1	0	0	0	0	1	0	0	0	11907	1116	39	1	1454	1	PHACTR4	1	28800624	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	532	28800624	220449997	159	8310											
PHACTR4	65979	broad.mit.edu	37	chr1	28807115	28807115	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattggaaacacactgatcCggtaggcctttgcttagatt	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28807115	A	A	28807115	2	1	9	1	0	0	0	0	0	0	0	1	11907	666	23	1		1	PHACTR4	1	28807115	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6491	28807115	220443506	160	8311											
TRNAU1AP	54952	broad.mit.edu	37	chr1	28903985	28903985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgtccctagacttccCtgaccccatccttgcttgct	7	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28903985	A	A	28903985	1	1	9	0	1	0	0	0	0	0	0	0	16697	696	24	2		2	TRNAU1AP	1	28903985	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96870	28903985	220346636	161	8312											
YTHDF2	51441	broad.mit.edu	37	chr1	29070055	29070055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgaggacgatattcacCgttccattaagtataatatt	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29070055	A	A	29070055	3	1	9	1	0	0	0	0	1	0	0	0	17626	652	23	1	1287	1	YTHDF2	1	29070055	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	166070	29070055	220180566	162	8313											
EPB41	2035	broad.mit.edu	37	chr1	29314164	29314164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaccaagaacaaggagcGgacatcagaaagcagaggac	12	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29314164	T	T	29314164	3	4	9	1	0	0	0	0	1	0	0	0	5193	1116	39	1	217	1	EPB41	1	29314164	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	244109	29314164	219936457	163	8314											
EPB41	2035	broad.mit.edu	37	chr1	29319859	29319859	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagcctgctcaggaagaactCagagaagatccagattttga	10	8	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29319859	A	A	29319859	2	1	9	1	0	0	0	0	0	0	0	1	5193	813	29	3		3	EPB41	1	29319859	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5695	29319859	219930762	164	8315											
SFRS4	6429	broad.mit.edu	37	chr1	29475182	29475182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcctttgacacggagcGggatggagatctggactggg	16	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29475182	T	T	29475182	3	4	9	1	0	0	0	0	1	0	0	0	14292	1116	39	1	263	1	SFRS4	1	29475182	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	155323	29475182	219775439	165	8316											
SFRS4	6429	broad.mit.edu	37	chr1	29475505	29475505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcctgactcctgctcCgacttttgctcttactttta	4	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29475505	A	A	29475505	3	1	9	1	0	0	0	0	1	0	0	0	14292	652	23	1	586	1	SFRS4	1	29475505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	323	29475505	219775116	166	8317											
SFRS4	6429	broad.mit.edu	37	chr1	29476679	29476679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcggcttctgctcttacGggaatgtctgcttcgagagc	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29476679	T	T	29476679	3	4	9	1	0	0	0	0	1	0	0	0	14292	1116	39	1	888	1	SFRS4	1	29476679	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1174	29476679	219773942	167	8318											
MECR	51102	broad.mit.edu	37	chr1	29543234	29543234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggagatgttcatgtcatcCaggctagaatgggtgtttcg	13	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29543234	A	A	29543234	1	1	9	0	1	0	0	0	0	0	0	0	9517	609	21	2		2	MECR	1	29543234	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66555	29543234	219707387	168	8319											
PTPRU	10076	broad.mit.edu	37	chr1	29585137	29585137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctacttcctgtacagccGggacgggcacagcccgggca	13	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29585137	T	T	29585137	3	4	9	1	0	0	0	0	1	0	0	0	12921	1116	39	1	336	1	PTPRU	1	29585137	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41903	29585137	219665484	169	8320											
PTPRU	10076	broad.mit.edu	37	chr1	29638197	29638197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaggactcagacacctacGgggacatcaagattatgctg	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29638197	T	T	29638197	3	4	9	1	0	0	0	0	1	0	0	0	12921	1116	39	1	3136	1	PTPRU	1	29638197	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53060	29638197	219612424	170	8321											
PUM1	9698	broad.mit.edu	37	chr1	31426612	31426612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatatgtccagcaatctccCgcagttgtaaattggggtac	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31426612	A	A	31426612	3	1	9	1	0	0	0	0	1	0	0	0	12933	652	23	1	1058	1	PUM1	1	31426612	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1788415	31426612	217824009	171	8322											
PUM1	9698	broad.mit.edu	37	chr1	31440090	31440090	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagctccaagaccatttctCgcgcctgcattcactacaag	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31440090	A	A	31440090	2	1	9	1	0	0	0	0	0	0	0	1	12933	871	31	3		3	PUM1	1	31440090	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13478	31440090	217810531	172	8323											
PUM1	9698	broad.mit.edu	37	chr1	31479924	31479924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggattcatctgtttccCaaaactttttacctggcaag	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31479924	A	A	31479924	3	1	9	1	0	0	0	0	1	0	0	0	12933	595	21	2	3184	2	PUM1	1	31479924	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39834	31479924	217770697	173	8324											
SNRNP40	9410	broad.mit.edu	37	chr1	31742056	31742056	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttacacatctctctttGggggcaaatggccggacatc	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31742056	T	T	31742056	2	4	9	1	0	0	0	0	0	0	0	1	14970	1335	47	2		2	SNRNP40	1	31742056	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	262132	31742056	217508565	174	8325											
TINAGL1	64129	broad.mit.edu	37	chr1	32044850	32044850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtcttgggaacgtactGggacaactgtaaccgttggt	12	9	1	0	rs144415175	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32044850	T	T	32044850	3	4	9	1	0	0	0	0	1	0	0	0	16045	1357	47	2	362	2	TINAGL1	1	32044850	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	302794	32044850	217205771	175	8326											
COL16A1	1307	broad.mit.edu	37	chr1	32150514	32150514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagccaccccaaagtgccCggcaccacatcaggctgggg	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32150514	A	A	32150514	1	1	9	0	1	0	0	0	0	0	0	0	3705	667	23	1		1	COL16A1	1	32150514	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	105664	32150514	217100107	176	8327											
COL16A1	1307	broad.mit.edu	37	chr1	32154164	32154164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacctctccaaggctcccCgggtcccagtgtccaaccag	8	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32154164	A	A	32154164	1	1	9	0	1	0	0	0	0	0	0	0	3705	667	23	1		1	COL16A1	1	32154164	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3650	32154164	217096457	177	8328											
BAI2	576	broad.mit.edu	37	chr1	32201935	32201935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtactagctggatgtacCgtatcctttcgttcgggtaa	10	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32201935	A	A	32201935	3	1	9	1	0	0	0	0	1	0	0	0	1304	652	23	1	1618	1	BAI2	1	32201935	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47771	32201935	217048686	178	8329											
SPOCD1	90853	broad.mit.edu	37	chr1	32262253	32262253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctccacttcgcccttgtGggtcattttggaggctggaa	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32262253	T	T	32262253	3	4	9	1	0	0	0	0	1	0	0	0	15196	1348	47	2	1469	2	SPOCD1	1	32262253	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60318	32262253	216988368	179	8330											
KHDRBS1	10657	broad.mit.edu	37	chr1	32497293	32497293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaatgccttctacttgccCagaatgcagtatggatgtct	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32497293	A	A	32497293	1	1	9	0	1	0	0	0	0	0	0	0	8216	609	21	2		2	KHDRBS1	1	32497293	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	235040	32497293	216753328	180	8331											
KHDRBS1	10657	broad.mit.edu	37	chr1	32508209	32508209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcatacagagagcaccCatatggacgttattaaaaac	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32508209	A	A	32508209	3	1	9	1	0	0	0	0	1	0	0	0	8216	594	21	2	1350	2	KHDRBS1	1	32508209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10916	32508209	216742412	181	8332											
KPNA6	23633	broad.mit.edu	37	chr1	32628012	32628012	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactcttcagcagcgactcGgacttgctggcagatgcttg	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32628012	T	T	32628012	2	4	9	1	0	0	0	0	0	0	0	1	8505	1103	39	1		1	KPNA6	1	32628012	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	119803	32628012	216622609	182	8333											
KPNA6	23633	broad.mit.edu	37	chr1	32636463	32636463	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagttcatcttccagcagCctgaggcccccatggagggc	12	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32636463	T	T	32636463	3	4	9	1	0	0	0	0	1	0	0	0	8505	739	26	4	1633	4	KPNA6	1	32636463	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8451	32636463	216614158	183	8334											
CCDC28B	79140	broad.mit.edu	37	chr1	32670101	32670101	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggatccaagagctctGggcccctcaacctccccaga	9	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32670101	T	T	32670101	1	4	9	0	1	0	0	0	0	0	0	0	2830	1363	47	2		2	CCDC28B	1	32670101	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	33638	32670101	216580520	184	8335											
EIF3I	8668	broad.mit.edu	37	chr1	32694367	32694368	+	Missense_Mutation	DNP	CG	AT	AT													ttgaacatcagaagactttcCggacagaacgtcctgtcaac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	32694368	AT	AT	32694367	3	1	9	1	0	0	0	0	1	0	0	0	5061	643	23	1	709	1	EIF3I	1	32694367	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	24266	32694367	216556254	185	8336											
LCK	3932	broad.mit.edu	37	chr1	32745271	32745271	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactcttgcttctgcccacaGggagtctagtggattttctc	9	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32745271	C	C	32745271	5	2	9	1	0	0	0	0	0	0	1	0	8748	1014	35	4	998	4	LCK	1	32745271	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	50904	32745271	216505350	186	8337											
LCK	3932	broad.mit.edu	37	chr1	32745346	32745346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcctggacatggcagccCaagtaaggagactggggagg	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32745346	A	A	32745346	3	1	9	1	0	0	0	0	1	0	0	0	8748	595	21	2	1073	2	LCK	1	32745346	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	32745346	216505275	187	8338											
LCK	3932	broad.mit.edu	37	chr1	32751110	32751110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctttcacccatcaaccCgtagggatgaccaacccgga	8	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32751110	A	A	32751110	1	1	9	0	1	0	0	0	0	0	0	0	8748	667	23	1		1	LCK	1	32751110	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5764	32751110	216499511	188	8339											
HDAC1	3065	broad.mit.edu	37	chr1	32790093	32790093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaagtcaacgttggtgaGgactgtccagtattcgatgg	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32790093	T	T	32790093	3	4	9	1	0	0	0	0	1	0	0	0	7071	991	35	2	308	2	HDAC1	1	32790093	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38983	32790093	216460528	189	8340											
TSSK3	81629	broad.mit.edu	37	chr1	32829294	32829294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgctggagtctgccgacGggaaaatctgcctggtgatg	15	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32829294	T	T	32829294	3	4	9	1	0	0	0	0	1	0	0	0	16795	1116	39	1	250	1	TSSK3	1	32829294	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39201	32829294	216421327	190	8341											
BSDC1	55108	broad.mit.edu	37	chr1	32834141	32834141	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagtcctcactgatgtcCgtgcttgagcctggaaccac	9	15	1	2	rs147779640	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32834141	A	A	32834141	2	1	9	1	0	0	0	0	0	0	0	1	1537	639	23	1		1	BSDC1	1	32834141	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4847	32834141	216416480	191	8342											
ZBTB8OS	339487	broad.mit.edu	37	chr1	33087491	33087491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgatcacaaaaacttccGggttctcttcattatagacc	5	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33087491	T	T	33087491	3	4	9	1	0	0	0	0	1	0	0	0	17683	1116	39	1	31	1	ZBTB8OS	1	33087491	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	253350	33087491	216163130	192	8343											
ZBTB8OS	339487	broad.mit.edu	37	chr1	33116183	33116183	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccaccggacttcggccCggagttactacttccgctct	8	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33116183	A	A	33116183	1	1	9	0	1	0	0	0	0	0	0	0	17683	667	23	1		1	ZBTB8OS	1	33116183	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	28692	33116183	216134438	193	8344											
RBBP4	5928	broad.mit.edu	37	chr1	33149530	33149530	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgtgagccaccccgtccGgcctgtttttaaggcattaa	11	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33149530	T	T	33149530	1	4	9	0	1	0	0	0	0	0	0	0	13209	1131	39	1		1	RBBP4	1	33149530	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	33347	33149530	216101091	194	8345											
SYNC	81493	broad.mit.edu	37	chr1	33149648	33149648	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccacctgcctgagaagtGggagcatcagcctgttccag	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33149648	T	T	33149648	2	4	9	1	0	0	0	0	0	0	0	1	15562	1335	47	2		2	SYNC	1	33149648	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	118	33149648	216100973	195	8346											
YARS	8565	broad.mit.edu	37	chr1	33246611	33246611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacagacaaacctgaccCcaatctgcctctctgagatg	8	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33246611	A	A	33246611	1	1	9	0	1	0	0	0	0	0	0	0	17594	638	22	2		2	YARS	1	33246611	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96963	33246611	216004010	196	8347											
YARS	8565	broad.mit.edu	37	chr1	33256827	33256827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggattcatcagatggaccCgttttgaatagccaagtgca	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33256827	A	A	33256827	3	1	9	1	0	0	0	0	1	0	0	0	17594	652	23	1	998	1	YARS	1	33256827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10216	33256827	215993794	197	8348											
S100PBP	64766	broad.mit.edu	37	chr1	33291714	33291714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaaatgatgtgctcacGggtgccctctgaacagtctt	10	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33291714	T	T	33291714	3	4	9	1	0	0	0	0	1	0	0	0	13902	1116	39	1	16	1	S100PBP	1	33291714	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34887	33291714	215958907	198	8349											
RNF19B	127544	broad.mit.edu	37	chr1	33402616	33402616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactctctaggtcactgcGgatgctttcaggctgggcca	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33402616	T	T	33402616	3	4	9	1	0	0	0	0	1	0	0	0	13582	1116	39	1	212	1	RNF19B	1	33402616	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110902	33402616	215848005	199	8350											
RNF19B	127544	broad.mit.edu	37	chr1	33415238	33415238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactcgtaaagtctgggccCtctgttgacgggccatatcg	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33415238	A	A	33415238	3	1	9	1	0	0	0	0	1	0	0	0	13582	681	24	2	1483	2	RNF19B	1	33415238	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12622	33415238	215835383	200	8351											
AK2	204	broad.mit.edu	37	chr1	33480173	33480173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcctcgtggtaggaacGgccactcttggggtgaatca	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33480173	T	T	33480173	3	4	9	1	0	0	0	0	1	0	0	0	440	1116	39	1	288	1	AK2	1	33480173	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64935	33480173	215770448	201	8352											
PHC2	1912	broad.mit.edu	37	chr1	33832979	33832979	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgagtgggggtggggccCgaggctgctgccgctggtgt	22	9	0	1	rs142225642		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33832979	A	A	33832979	2	1	9	1	0	0	0	0	0	0	0	1	11912	639	23	1		1	PHC2	1	33832979	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	352806	33832979	215417642	202	8353											
PHC2	1912	broad.mit.edu	37	chr1	33840786	33840786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctccaaactccttgattGggccattttgcatccttcac	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33840786	T	T	33840786	1	4	9	0	1	0	0	0	0	0	0	0	11912	1363	47	2		2	PHC2	1	33840786	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7807	33840786	215409835	203	8354											
ZSCAN20	7579	broad.mit.edu	37	chr1	33957296	33957296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccagctctgttccagagtCgtattggtaagaacatgggg	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33957296	A	A	33957296	3	1	9	1	0	0	0	0	1	0	0	0	18361	884	31	3	1456	3	ZSCAN20	1	33957296	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116510	33957296	215293325	204	8355											
ZSCAN20	7579	broad.mit.edu	37	chr1	33960638	33960638	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaccaaagaatccatacGggagagaaaccatatgaatg	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33960638	T	T	33960638	2	4	9	1	0	0	0	0	0	0	0	1	18361	1103	39	1		1	ZSCAN20	1	33960638	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3342	33960638	215289983	205	8356											
CSMD2	114784	broad.mit.edu	37	chr1	33985221	33985221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggttctcaaatgtggccCgaacattggtgttctcgtgg	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33985221	A	A	33985221	3	1	9	1	0	0	0	0	1	0	0	0	3979	652	23	1	106	1	CSMD2	1	33985221	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24583	33985221	215265400	206	8357											
CSMD2	114784	broad.mit.edu	37	chr1	34068135	34068135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggaagaagtgatgttccCgccacaagggactgccaggg	15	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34068135	A	A	34068135	3	1	9	1	0	0	0	0	1	0	0	0	3979	652	23	1	4017	1	CSMD2	1	34068135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82914	34068135	215182486	207	8358											
CSMD2	114784	broad.mit.edu	37	chr1	34123701	34123701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactccgactcccattctgcGggatcccagggtcattgcag	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34123701	T	T	34123701	3	4	9	1	0	0	0	0	1	0	0	0	3979	1116	39	1	6463	1	CSMD2	1	34123701	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55566	34123701	215126920	208	8359											
CSMD2	114784	broad.mit.edu	37	chr1	34286102	34286102	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagtcttttgcccctttcGggtatgccagggtctggaca	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34286102	T	T	34286102	2	4	9	1	0	0	0	0	0	0	0	1	3979	1103	39	1		1	CSMD2	1	34286102	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	162401	34286102	214964519	209	8360											
CSMD2	114784	broad.mit.edu	37	chr1	34286137	34286137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacacatattatgtccttGggacacaccaacctgagtta	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34286137	T	T	34286137	3	4	9	1	0	0	0	0	1	0	0	0	3979	1357	47	2	9699	2	CSMD2	1	34286137	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	34286137	214964484	210	8361											
HMGB4	127540	broad.mit.edu	37	chr1	34330000	34330000	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaaactcgacaaagccCgataccaggaagaaatgatg	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34330000	A	A	34330000	2	1	9	1	0	0	0	0	0	0	0	1	7295	644	23	1		1	HMGB4	1	34330000	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43863	34330000	214920621	211	8362											
CSMD2	114784	broad.mit.edu	37	chr1	34383875	34383875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgatgccactctggcccCgcagggtcccaccacaggca	11	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34383875	A	A	34383875	3	1	9	1	0	0	0	0	1	0	0	0	3979	652	23	1	10103	1	CSMD2	1	34383875	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53875	34383875	214866746	212	8363											
GJB3	2707	broad.mit.edu	37	chr1	35250679	35250679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcgggagcgccggcacCgccagaaacacggggaccag	17	13	0	1	rs147106166	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35250679	A	A	35250679	3	1	9	1	0	0	0	0	1	0	0	0	6473	652	23	1	318	1	GJB3	1	35250679	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	866804	35250679	213999942	213	8364											
DLGAP3	58512	broad.mit.edu	37	chr1	35333203	35333203	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaagttgtgtgctgccCacagcactgcggatcttctc	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35333203	A	A	35333203	2	1	9	1	0	0	0	0	0	0	0	1	4601	581	21	2		2	DLGAP3	1	35333203	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82524	35333203	213917418	214	8365											
ZMYM6	9204	broad.mit.edu	37	chr1	35457949	35457949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaaggctgggaagattGggaagatggaaatttcatag	15	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35457949	T	T	35457949	3	4	9	1	0	0	0	0	1	0	0	0	17830	1357	47	2	1953	2	ZMYM6	1	35457949	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	124746	35457949	213792672	215	8366											
ZMYM6	9204	broad.mit.edu	37	chr1	35496150	35496150	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaagatgaaatgcttacttGagcattgtctggttcttctt	9	6	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35496150	T	T	35496150	3	4	9	1	0	0	0	0	1	0	0	0	17830	1299	45	3	3946	3	ZMYM6	1	35496150	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38201	35496150	213754471	216	8367											
ZMYM4	9202	broad.mit.edu	37	chr1	35862196	35862196	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attattgtggtgccagttccCgtaccagtgtttgttcccat	9	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35862196	A	A	35862196	2	1	9	1	0	0	0	0	0	0	0	1	17828	639	23	1		1	ZMYM4	1	35862196	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	366046	35862196	213388425	217	8368											
ZMYM4	9202	broad.mit.edu	37	chr1	35885133	35885133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgagcgctcctgtgtccCgaatagccccatgtggtact	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35885133	A	A	35885133	3	1	9	1	0	0	0	0	1	0	0	0	17828	652	23	1	4620	1	ZMYM4	1	35885133	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22937	35885133	213365488	218	8369											
KIAA0319L	79932	broad.mit.edu	37	chr1	35906654	35906654	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagggcccctacctgctcGggaggttggcttcagctcca	12	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35906654	T	T	35906654	2	4	9	1	0	0	0	0	0	0	0	1	8239	1124	39	1		1	KIAA0319L	1	35906654	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21521	35906654	213343967	219	8370											
KIAA0319L	79932	broad.mit.edu	37	chr1	35913726	35913726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagctcattcaagaagcccGggggcccctggtctttcctt	10	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35913726	T	T	35913726	1	4	9	0	1	0	0	0	0	0	0	0	8239	1131	39	1		1	KIAA0319L	1	35913726	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7072	35913726	213336895	220	8371											
KIAA0319L	79932	broad.mit.edu	37	chr1	35921581	35921581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagctctacttctcttGggcaagaaaaaataggaacc	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35921581	T	T	35921581	1	4	9	0	1	0	0	0	0	0	0	0	8239	1363	47	2		2	KIAA0319L	1	35921581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7855	35921581	213329040	221	8372											
KIAA0319L	79932	broad.mit.edu	37	chr1	35921601	35921601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaagaaaaaataggaacCattccctcctacctgcatct	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35921601	A	A	35921601	1	1	9	0	1	0	0	0	0	0	0	0	8239	609	21	2		2	KIAA0319L	1	35921601	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	35921601	213329020	222	8373											
KIAA0319L	79932	broad.mit.edu	37	chr1	35921699	35921699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatcagtgctctggttcCcaaagagggtgatggagttt	13	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35921699	A	A	35921699	3	1	9	1	0	0	0	0	1	0	0	0	8239	623	22	2	1626	2	KIAA0319L	1	35921699	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	35921699	213328922	223	8374											
NCDN	23154	broad.mit.edu	37	chr1	36024710	36024710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctcttgtgttcacagttGggcaaggcgagcatcatggc	12	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36024710	T	T	36024710	3	4	9	1	0	0	0	0	1	0	0	0	10309	1339	47	2	42	2	NCDN	1	36024710	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	103011	36024710	213225911	224	8375											
PSMB2	5690	broad.mit.edu	37	chr1	36070783	36070783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaacaggaacaacactGgcaaacagagagacaaacat	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36070783	T	T	36070783	1	4	9	0	1	0	0	0	0	0	0	0	12783	1363	47	2		2	PSMB2	1	36070783	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46073	36070783	213179838	225	8376											
CLSPN	63967	broad.mit.edu	37	chr1	36205057	36205057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattcatcaatttcttcccCatcatactcatcttcgcttc	1	14	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36205057	A	A	36205057	3	1	9	1	0	0	0	0	1	0	0	0	3592	594	21	2	830	2	CLSPN	1	36205057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134274	36205057	213045564	226	8377											
CLSPN	63967	broad.mit.edu	37	chr1	36209118	36209118	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctccaaattcctcctcctCgtcttcctcttccctaaaat	2	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36209118	A	A	36209118	4	1	9	1	0	0	0	0	0	1	0	0	3592	893	31	3	1075	3	CLSPN	1	36209118	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4061	36209118	213041503	227	8378											
CLSPN	63967	broad.mit.edu	37	chr1	36213595	36213595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagtgtcttaggctctGgggaggcgttatacagatcc	14	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36213595	T	T	36213595	3	4	9	1	0	0	0	0	1	0	0	0	3592	1348	47	2	1527	2	CLSPN	1	36213595	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4477	36213595	213037026	228	8379											
EIF2C4	192670	broad.mit.edu	37	chr1	36298207	36298207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcagcttagtaatatccCttccagatatgaaaatactg	5	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36298207	A	A	36298207	1	1	9	0	1	0	0	0	0	0	0	0	5048	696	24	2		2	EIF2C4	1	36298207	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	84612	36298207	212952414	229	8380											
EIF2C4	192670	broad.mit.edu	37	chr1	36315796	36315796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccagcaggcactacagtGgatagtaccatcacacatcc	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36315796	T	T	36315796	2	4	9	1	0	0	0	0	0	0	0	1	5048	1335	47	2		2	EIF2C4	1	36315796	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17589	36315796	212934825	230	8381											
EIF2C1	26523	broad.mit.edu	37	chr1	36372720	36372720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggaagacgccggtgtatGgtacagttctcttgggacag	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36372720	T	T	36372720	3	4	9	1	0	0	0	0	1	0	0	0	5045	1362	47	2	1628	2	EIF2C1	1	36372720	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56924	36372720	212877901	231	8382											
EIF2C1	26523	broad.mit.edu	37	chr1	36379846	36379846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttacacaccccccagcaGgggatgggaaaaaaccttct	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36379846	T	T	36379846	3	4	9	1	0	0	0	0	1	0	0	0	5045	1000	35	2	1858	2	EIF2C1	1	36379846	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7126	36379846	212870775	232	8383											
EIF2C1	26523	broad.mit.edu	37	chr1	36380998	36380998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgatactgtgctactgtgcGggtacagcgaccacggcaag	13	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36380998	T	T	36380998	3	4	9	1	0	0	0	0	1	0	0	0	5045	1116	39	1	1941	1	EIF2C1	1	36380998	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1152	36380998	212869623	233	8384											
EIF2C1	26523	broad.mit.edu	37	chr1	36383299	36383299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaaacgccatcacaccCgccttttctgtgctgacaag	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36383299	A	A	36383299	3	1	9	1	0	0	0	0	1	0	0	0	5045	652	23	1	2196	1	EIF2C1	1	36383299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2301	36383299	212867322	234	8385											
THRAP3	9967	broad.mit.edu	37	chr1	36754831	36754831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattctgagaagccttttcGgggcagtcagtctcccaaaa	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36754831	T	T	36754831	3	4	9	1	0	0	0	0	1	0	0	0	15997	1116	39	1	1221	1	THRAP3	1	36754831	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	371532	36754831	212495790	235	8386											
THRAP3	9967	broad.mit.edu	37	chr1	36755184	36755184	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcctgagaagaatttcCgagtgactgcttataaagca	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36755184	A	A	36755184	2	1	9	1	0	0	0	0	0	0	0	1	15997	644	23	1		1	THRAP3	1	36755184	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	353	36755184	212495437	236	8387											
OSCP1	127700	broad.mit.edu	37	chr1	36886091	36886091	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatactcctcttcttcatcGgtggtaaagagattcaaccg	7	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36886091	T	T	36886091	2	4	9	1	0	0	0	0	0	0	0	1	11380	1103	39	1		1	OSCP1	1	36886091	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	130907	36886091	212364530	237	8388											
OSCP1	127700	broad.mit.edu	37	chr1	36886197	36886197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagctcttctttagcaagaGggtttggagcaatgctttcc	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36886197	T	T	36886197	3	4	9	1	0	0	0	0	1	0	0	0	11380	1000	35	2	312	2	OSCP1	1	36886197	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106	36886197	212364424	238	8389											
MRPS15	64960	broad.mit.edu	37	chr1	36929807	36929807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcccaccgcccggcagccCgggtactaggacctgggtaa	13	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36929807	A	A	36929807	3	1	9	1	0	0	0	0	1	0	0	0	9919	652	23	1	735	1	MRPS15	1	36929807	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43610	36929807	212320814	239	8390											
CSF3R	1441	broad.mit.edu	37	chr1	36937817	36937817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatactgttggctgctccCagcctctcatcacctcctta	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36937817	A	A	36937817	1	1	9	0	1	0	0	0	0	0	0	0	3971	609	21	2		2	CSF3R	1	36937817	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8010	36937817	212312804	240	8391											
CSF3R	1441	broad.mit.edu	37	chr1	36939419	36939419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctcaggtcctggctccCactggcagatgaggctgctg	15	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36939419	A	A	36939419	3	1	9	1	0	0	0	0	1	0	0	0	3971	595	21	2	2321	2	CSF3R	1	36939419	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1602	36939419	212311202	241	8392											
CSF3R	1441	broad.mit.edu	37	chr1	36941126	36941126	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacgctgctgcctgcccccGggctgaagctctgctcccag	12	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36941126	T	T	36941126	2	4	9	1	0	0	0	0	0	0	0	1	3971	1103	39	1		1	CSF3R	1	36941126	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1707	36941126	212309495	242	8393											
ZC3H12A	80149	broad.mit.edu	37	chr1	37948795	37948795	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaggccctggtgagccGggcccaccccgagcccctta	15	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37948795	T	T	37948795	2	4	9	1	0	0	0	0	0	0	0	1	17687	1103	39	1		1	ZC3H12A	1	37948795	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1007669	37948795	211301826	243	8394											
SNIP1	79753	broad.mit.edu	37	chr1	38006338	38006338	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgatcctcccgtcctctccGgggatgatcctcacgctcct	8	19	2	1	rs139950676	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38006338	T	T	38006338	2	4	9	1	0	0	0	0	0	0	0	1	14962	1115	39	1		1	SNIP1	1	38006338	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57543	38006338	211244283	244	8395											
SNIP1	79753	broad.mit.edu	37	chr1	38018281	38018281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgagtggtgaggacttcGgtttctcttactgcgaggag	15	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38018281	T	T	38018281	2	4	9	1	0	0	0	0	0	0	0	1	14962	1124	39	1		1	SNIP1	1	38018281	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11943	38018281	211232340	245	8396											
MTF1	4520	broad.mit.edu	37	chr1	38280884	38280884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgggaatcagattggacGgggtgtccaggctctggagg	17	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38280884	T	T	38280884	3	4	9	1	0	0	0	0	1	0	0	0	10016	1116	39	1	79	1	MTF1	1	38280884	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	262603	38280884	210969737	246	8397											
MTF1	4520	broad.mit.edu	37	chr1	38281017	38281017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtagaggatgatgaccCgggaacaggggctgaagaga	17	6	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38281017	A	A	38281017	3	1	9	1	0	0	0	0	1	0	0	0	10016	652	23	1	212	1	MTF1	1	38281017	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133	38281017	210969604	247	8398											
SF3A3	10946	broad.mit.edu	37	chr1	38433641	38433641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttaaccctggatacacaGggtattaggatgctgaattg	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38433641	T	T	38433641	1	4	9	0	1	0	0	0	0	0	0	0	14261	1015	35	2		2	SF3A3	1	38433641	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	152624	38433641	210816980	248	8399											
RHBDL2	54933	broad.mit.edu	37	chr1	39384720	39384720	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgttcctcgggacttttcGggcagcatccattttgagac	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39384720	T	T	39384720	2	4	9	1	0	0	0	0	0	0	0	1	13431	1103	39	1		1	RHBDL2	1	39384720	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	951079	39384720	209865901	249	8400											
MACF1	23499	broad.mit.edu	37	chr1	39753218	39753218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtatgaactactgtcttGggtagaagagatgcaggtgg	15	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39753218	T	T	39753218	3	4	9	1	0	0	0	0	1	0	0	0	9232	1357	47	2	1838	2	MACF1	1	39753218	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	368498	39753218	209497403	250	8401											
MACF1	23499	broad.mit.edu	37	chr1	39852900	39852900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagctcttgccagcaccCagcagttccagcaaatgttt	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39852900	A	A	39852900	3	1	9	1	0	0	0	0	1	0	0	0	9232	595	21	2	14561	2	MACF1	1	39852900	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99682	39852900	209397721	251	8402											
MACF1	23499	broad.mit.edu	37	chr1	39852976	39852976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaagcaaaaaactgccCaatttctgcaaaattggagc	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39852976	A	A	39852976	3	1	9	1	0	0	0	0	1	0	0	0	9232	594	21	2	14637	2	MACF1	1	39852976	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	39852976	209397645	252	8403											
MACF1	23499	broad.mit.edu	37	chr1	39852997	39852997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttctgcaaaattggagcGgctacagtctcagctacagg	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39852997	T	T	39852997	3	4	9	1	0	0	0	0	1	0	0	0	9232	1116	39	1	14658	1	MACF1	1	39852997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	39852997	209397624	253	8404											
MACF1	23499	broad.mit.edu	37	chr1	39910525	39910525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtacagtgtatgatcccCatgtttgagtaatttgctga	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39910525	A	A	39910525	1	1	9	0	1	0	0	0	0	0	0	0	9232	609	21	2		2	MACF1	1	39910525	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57528	39910525	209340096	254	8405											
MACF1	23499	broad.mit.edu	37	chr1	39950202	39950202	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atataaggaggtgtaaggagAccttttaaagttgaatttct	10	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39950202	G	G	39950202	1	3	9	0	1	0	0	0	0	0	0	0	9232	290	10	5		5	MACF1	1	39950202	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	39677	39950202	209300419	255	8406											
NT5C1A	84618	broad.mit.edu	37	chr1	40131358	40131358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccccccagcttagaccccCaaggattgatacctgaagtt	7	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40131358	A	A	40131358	1	1	9	0	1	0	0	0	0	0	0	0	10780	609	21	2		2	NT5C1A	1	40131358	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	181156	40131358	209119263	256	8407											
MFSD2A	84879	broad.mit.edu	37	chr1	40432296	40432296	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcatacctgctggcagcGggggtcattgtctgtatcta	13	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40432296	T	T	40432296	2	4	9	1	0	0	0	0	0	0	0	1	9623	1103	39	1		1	MFSD2A	1	40432296	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	300938	40432296	208818325	257	8408											
CAP1	10487	broad.mit.edu	37	chr1	40527409	40527409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcttctttctggcaggcGgagatggtccacacaggttt	12	9	3	1	rs34497744	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40527409	T	T	40527409	2	4	9	1	0	0	0	0	0	0	0	1	2645	1103	39	1		1	CAP1	1	40527409	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	95113	40527409	208723212	258	8409											
PPT1	5538	broad.mit.edu	37	chr1	40539705	40539705	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaagagttaggggctccCtgagctctattgtgaactat	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40539705	A	A	40539705	1	1	9	0	1	0	0	0	0	0	0	0	12512	696	24	2		2	PPT1	1	40539705	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	12296	40539705	208710916	259	8410											
PPT1	5538	broad.mit.edu	37	chr1	40539728	40539728	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctattgtgaactatacGggtttcatccaaggaatggt	10	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40539728	T	T	40539728	1	4	9	0	1	0	0	0	0	0	0	0	12512	1131	39	1		1	PPT1	1	40539728	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	40539728	208710893	260	8411											
PPT1	5538	broad.mit.edu	37	chr1	40546070	40546070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccggtttgggtgcttaccCgctcctgatttatatctgcc	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40546070	A	A	40546070	3	1	9	1	0	0	0	0	1	0	0	0	12512	666	23	1	310	1	PPT1	1	40546070	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6342	40546070	208704551	261	8412											
PPT1	5538	broad.mit.edu	37	chr1	40562846	40562846	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtccagatgctgcagcgccCgagaagcgcaggtccatggc	15	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40562846	G	G	40562846	3	3	9	1	0	0	0	0	1	0	0	0	12512	652	23	4	891	4	PPT1	1	40562846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16776	40562846	208687775	262	8413											
RLF	6018	broad.mit.edu	37	chr1	40701758	40701758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttactagctttaaaagccCactggccttttgatcctgag	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40701758	A	A	40701758	3	1	9	1	0	0	0	0	1	0	0	0	13500	594	21	2	1414	2	RLF	1	40701758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138912	40701758	208548863	263	8414											
RLF	6018	broad.mit.edu	37	chr1	40702059	40702059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtttgttatgtaagcGggaatgtatagaggctagaa	12	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40702059	T	T	40702059	3	4	9	1	0	0	0	0	1	0	0	0	13500	1116	39	1	1715	1	RLF	1	40702059	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	301	40702059	208548562	264	8415											
RLF	6018	broad.mit.edu	37	chr1	40702412	40702412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccggtacagactgttccCgtgtgtttaagcaatttaaa	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702412	A	A	40702412	3	1	9	1	0	0	0	0	1	0	0	0	13500	652	23	1	2068	1	RLF	1	40702412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	353	40702412	208548209	265	8416											
ZNF643	65243	broad.mit.edu	37	chr1	40928563	40928563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacatgagaattcataccGgggagaaacctttcagatgt	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40928563	T	T	40928563	3	4	9	1	0	0	0	0	1	0	0	0	18186	1116	39	1	925	1	ZNF643	1	40928563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	226151	40928563	208322058	266	8417											
CTPS	1503	broad.mit.edu	37	chr1	41450444	41450444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggattgcagttgtgccatGgtataggtatttttcactta	10	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41450444	T	T	41450444	1	4	9	0	1	0	0	0	0	0	0	0	4056	1363	47	2		2	CTPS	1	41450444	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	521881	41450444	207800177	267	8418											
CTPS	1503	broad.mit.edu	37	chr1	41471763	41471763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccctacgaccagtcatccCgtggtgagtcaagtgtttga	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41471763	A	A	41471763	2	1	9	1	0	0	0	0	0	0	0	1	4056	639	23	1		1	CTPS	1	41471763	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21319	41471763	207778858	268	8419											
HIVEP3	59269	broad.mit.edu	37	chr1	41978945	41978945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggttagcgagtgtttgcGggctagtggtggacggctgc	18	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41978945	T	T	41978945	3	4	9	1	0	0	0	0	1	0	0	0	7255	1116	39	1	1281	1	HIVEP3	1	41978945	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	507182	41978945	207271676	269	8420											
HIVEP3	59269	broad.mit.edu	37	chr1	41979091	41979091	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggaggcccggcatgctcTggctggacatggagcagctg	18	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41979091	C	C	41979091	3	2	9	1	0	0	0	0	1	0	0	0	7255	1580	55	5	1427	5	HIVEP3	1	41979091	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	146	41979091	207271530	270	8421											
HIVEP3	59269	broad.mit.edu	37	chr1	42041146	42041146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaactgagccactgctgccCgtgaacaccaatgggcacca	9	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42041146	A	A	42041146	1	1	9	0	1	0	0	0	0	0	0	0	7255	667	23	1		1	HIVEP3	1	42041146	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62055	42041146	207209475	271	8422											
HIVEP3	59269	broad.mit.edu	37	chr1	42041159	42041159	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcccgtgaacaccaatGggcaccagctcttattccac	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42041159	T	T	42041159	1	4	9	0	1	0	0	0	0	0	0	0	7255	1363	47	2		2	HIVEP3	1	42041159	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	42041159	207209462	272	8423											
HIVEP3	59269	broad.mit.edu	37	chr1	42048229	42048229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactccaggggaaggttcCgagcagcatcagatggcccg	15	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42048229	A	A	42048229	3	1	9	1	0	0	0	0	1	0	0	0	7255	652	23	1	5004	1	HIVEP3	1	42048229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7070	42048229	207202392	273	8424											
HIVEP3	59269	broad.mit.edu	37	chr1	42050302	42050302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcccgggaagggctgcGgggctaagagctcttgggcg	21	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42050302	T	T	42050302	3	4	9	1	0	0	0	0	1	0	0	0	7255	1116	39	1	7077	1	HIVEP3	1	42050302	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2073	42050302	207200319	274	8425											
HIVEP3	59269	broad.mit.edu	37	chr1	42050410	42050410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctctcctttggtcagcCgcttccggggacttccctca	10	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42050410	A	A	42050410	3	1	9	1	0	0	0	0	1	0	0	0	7255	652	23	1	7185	1	HIVEP3	1	42050410	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	42050410	207200211	275	8426											
FOXJ3	22887	broad.mit.edu	37	chr1	42730882	42730882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaattaaagaagaaaagcCataaggtcaataaaatccaa	7	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42730882	A	A	42730882	1	1	9	0	1	0	0	0	0	0	0	0	6073	609	21	2		2	FOXJ3	1	42730882	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	680472	42730882	206519739	276	8427											
ZMYND12	84217	broad.mit.edu	37	chr1	42898905	42898905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttgtcagatgtagattctCgaatgttcaagattgaagtc	9	6	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42898905	A	A	42898905	3	1	9	1	0	0	0	0	1	0	0	0	17833	884	31	3	221	3	ZMYND12	1	42898905	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168023	42898905	206351716	277	8428											
ZMYND12	84217	broad.mit.edu	37	chr1	42905547	42905547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattggccagatgataacGggcctcttcatagtttttct	8	9	4	2	rs139202265	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42905547	T	T	42905547	3	4	9	1	0	0	0	0	1	0	0	0	17833	1116	39	1	543	1	ZMYND12	1	42905547	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6642	42905547	206345074	278	8429											
CCDC30	728621	broad.mit.edu	37	chr1	43011225	43011225	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaacagaaattcaaagcCgaaaggaagagacagaggaa	12	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43011225	A	A	43011225	2	1	9	1	0	0	0	0	0	0	0	1	2832	644	23	1		1	CCDC30	1	43011225	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105678	43011225	206239396	279	8430											
CCDC30	728621	broad.mit.edu	37	chr1	43108174	43108174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggaccagatcactgccCaaaatgataccctgcttcta	6	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43108174	A	A	43108174	3	1	9	1	0	0	0	0	1	0	0	0	2832	595	21	2	1711	2	CCDC30	1	43108174	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	96949	43108174	206142447	280	8431											
PPIH	10465	broad.mit.edu	37	chr1	43124892	43124892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcattcattttttgtccCtttcaggcagttctgcaccg	7	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43124892	A	A	43124892	1	1	9	0	1	0	0	0	0	0	0	0	12426	696	24	2		2	PPIH	1	43124892	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16718	43124892	206125729	281	8432											
PPIH	10465	broad.mit.edu	37	chr1	43131614	43131614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttcagctaacatggccGgggaaacttactgcaggtat	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43131614	T	T	43131614	1	4	9	0	1	0	0	0	0	0	0	0	12426	1131	39	1		1	PPIH	1	43131614	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6722	43131614	206119007	282	8433											
LEPRE1	64175	broad.mit.edu	37	chr1	43223459	43223459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagtctctcacctcacGggggccgatggatctggtgt	14	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43223459	T	T	43223459	3	4	9	1	0	0	0	0	1	0	0	0	8801	1116	39	1	1198	1	LEPRE1	1	43223459	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91845	43223459	206027162	283	8434											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43630148	43630148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttcatcttctctcttgttCgttttccaggtctcttctac	4	13	7	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43630148	A	A	43630148	3	1	9	1	0	0	0	0	1	0	0	0	4925	884	31	3	37	3	EBNA1BP2	1	43630148	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	406689	43630148	205620473	284	8435											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43634550	43634550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggaccaagtcagaccacGgcaatctcatctaacacaca	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43634550	T	T	43634550	1	4	9	0	1	0	0	0	0	0	0	0	4925	1131	39	1		1	EBNA1BP2	1	43634550	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4402	43634550	205616071	285	8436											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43634574	43634574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcatctaacacacactcCgcctcttcctgttccctgca	3	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43634574	A	A	43634574	1	1	9	0	1	0	0	0	0	0	0	0	4925	667	23	1		1	EBNA1BP2	1	43634574	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	43634574	205616047	286	8437											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43634618	43634618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttctcaccttcttccCgtatttcctaagtgctcgca	4	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43634618	A	A	43634618	3	1	9	1	0	0	0	0	1	0	0	0	4925	652	23	1	411	1	EBNA1BP2	1	43634618	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	43634618	205616003	287	8438											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43636510	43636510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttgagctgatggaggcGgggtaagactgcaagcactg	16	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43636510	T	T	43636510	3	4	9	1	0	0	0	0	1	0	0	0	4925	1116	39	1	580	1	EBNA1BP2	1	43636510	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1892	43636510	205614111	288	8439											
WDR65	149465	broad.mit.edu	37	chr1	43650907	43650907	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagccagatgtccatgccCcaggtgtttgccattgcagc	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43650907	A	A	43650907	2	1	9	1	0	0	0	0	0	0	0	1	17443	610	22	2		2	WDR65	1	43650907	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14397	43650907	205599714	289	8440											
WDR65	149465	broad.mit.edu	37	chr1	43663196	43663196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccttttgcttactctgcGggatcttgttctgtgtgatt	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43663196	T	T	43663196	1	4	9	0	1	0	0	0	0	0	0	0	17443	1131	39	1		1	WDR65	1	43663196	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12289	43663196	205587425	290	8441											
TIE1	7075	broad.mit.edu	37	chr1	43772858	43772858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgtaccaaggagtgccCaggttgcctacatggaggtg	15	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43772858	A	A	43772858	3	1	9	1	0	0	0	0	1	0	0	0	16016	594	21	2	704	2	TIE1	1	43772858	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109662	43772858	205477763	291	8442											
TIE1	7075	broad.mit.edu	37	chr1	43777408	43777408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccagcttgtggtctcccCgctggtctcgttctctgggg	13	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43777408	A	A	43777408	3	1	9	1	0	0	0	0	1	0	0	0	16016	652	23	1	1438	1	TIE1	1	43777408	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4550	43777408	205473213	292	8443											
TIE1	7075	broad.mit.edu	37	chr1	43778157	43778157	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatccccccaggcccgcacTgccctcctgacgggactcac	8	21	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43778157	A	A	43778157	2	1	9	1	0	0	0	0	0	0	0	1	16016	1567	55	5		5	TIE1	1	43778157	Silent	SNP	T	TCGA-05-4396-01A-21D-1855-08	749	43778157	205472464	293	8444											
TIE1	7075	broad.mit.edu	37	chr1	43783588	43783588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattgaatatgccccctacGggaacctgctagattttctg	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43783588	T	T	43783588	3	4	9	1	0	0	0	0	1	0	0	0	16016	1116	39	1	2833	1	TIE1	1	43783588	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5431	43783588	205467033	294	8445											
CDC20	991	broad.mit.edu	37	chr1	43826224	43826224	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgaccagtcactctgccCgagtgggctccctaagctgg	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43826224	A	A	43826224	2	1	9	1	0	0	0	0	0	0	0	1	3089	644	23	1		1	CDC20	1	43826224	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42636	43826224	205424397	295	8446											
CDC20	991	broad.mit.edu	37	chr1	43828680	43828680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggggccacagtggcatcCgcagcagcagatgagaccct	14	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43828680	A	A	43828680	2	1	9	1	0	0	0	0	0	0	0	1	3089	639	23	1		1	CDC20	1	43828680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2456	43828680	205421941	296	8447											
MED8	112950	broad.mit.edu	37	chr1	43852653	43852653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggctgaaaacaggcaccCgtccttcagtctgccgctgt	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43852653	A	A	43852653	3	1	9	1	0	0	0	0	1	0	0	0	9546	652	23	1	642	1	MED8	1	43852653	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23973	43852653	205397968	297	8448											
KIAA0467	23334	broad.mit.edu	37	chr1	43890040	43890040	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctggctttggagtgtccCgtcaggactggcccctgcgc	15	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43890040	A	A	43890040	1	1	9	0	1	0	0	0	0	0	0	0	8248	667	23	1		1	KIAA0467	1	43890040	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	37387	43890040	205360581	298	8449											
KIAA0467	23334	broad.mit.edu	37	chr1	43891516	43891516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgtagctccacccacGggatgctgcctgcataggct	10	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43891516	T	T	43891516	3	4	9	1	0	0	0	0	1	0	0	0	8248	1116	39	1	313	1	KIAA0467	1	43891516	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1476	43891516	205359105	299	8450											
KIAA0467	23334	broad.mit.edu	37	chr1	43893037	43893037	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggattggagtggggctccCagtctgaaagatctaggagg	18	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43893037	A	A	43893037	2	1	9	1	0	0	0	0	0	0	0	1	8248	581	21	2		2	KIAA0467	1	43893037	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1521	43893037	205357584	300	8451											
KIAA0467	23334	broad.mit.edu	37	chr1	43895383	43895383	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccattcagcatagagacCgaggacctaagcgagcctga	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43895383	A	A	43895383	2	1	9	1	0	0	0	0	0	0	0	1	8248	639	23	1		1	KIAA0467	1	43895383	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2346	43895383	205355238	301	8452											
KIAA0467	23334	broad.mit.edu	37	chr1	43895770	43895770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgccctccatccagcaggcGagaagtgagtggctctcttc	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43895770	T	T	43895770	3	4	9	1	0	0	0	0	1	0	0	0	8248	1058	37	3	1750	3	KIAA0467	1	43895770	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	387	43895770	205354851	302	8453											
KIAA0467	23334	broad.mit.edu	37	chr1	43897965	43897965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccgccgcctccatctccCtggccatgttcttcttgaag	8	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43897965	A	A	43897965	3	1	9	1	0	0	0	0	1	0	0	0	8248	681	24	2	2678	2	KIAA0467	1	43897965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2195	43897965	205352656	303	8454											
KIAA0467	23334	broad.mit.edu	37	chr1	43898033	43898033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggccaacagccaggtGggtcccatggggagccttct	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43898033	T	T	43898033	3	4	9	1	0	0	0	0	1	0	0	0	8248	1348	47	2	2746	2	KIAA0467	1	43898033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68	43898033	205352588	304	8455											
KIAA0467	23334	broad.mit.edu	37	chr1	43898710	43898710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagggtcccaatgacaccCttggtgagaaggcccccttc	12	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43898710	A	A	43898710	3	1	9	1	0	0	0	0	1	0	0	0	8248	681	24	2	3046	2	KIAA0467	1	43898710	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	677	43898710	205351911	305	8456											
KIAA0467	23334	broad.mit.edu	37	chr1	43903434	43903434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactttgctctctggaaccGgggccctgaccacagttttc	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43903434	T	T	43903434	1	4	9	0	1	0	0	0	0	0	0	0	8248	1131	39	1		1	KIAA0467	1	43903434	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4724	43903434	205347187	306	8457											
KIAA0467	23334	broad.mit.edu	37	chr1	43914303	43914303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgcttcctatccatgacGgtctcctggtaccagagcct	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43914303	T	T	43914303	2	4	9	1	0	0	0	0	0	0	0	1	8248	1103	39	1		1	KIAA0467	1	43914303	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10869	43914303	205336318	307	8458											
KIAA0467	23334	broad.mit.edu	37	chr1	43916550	43916550	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgtcccttgagccttcGggtcttcacttcccacttgg	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43916550	T	T	43916550	1	4	9	0	1	0	0	0	0	0	0	0	8248	1131	39	1		1	KIAA0467	1	43916550	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	2247	43916550	205334071	308	8459											
PTPRF	5792	broad.mit.edu	37	chr1	44058257	44058257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccccaccattgaggccCgcacagcccagtccagtaag	8	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44058257	A	A	44058257	3	1	9	1	0	0	0	0	1	0	0	0	12909	652	23	1	1832	1	PTPRF	1	44058257	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	141707	44058257	205192364	309	8460											
KDM4A	9682	broad.mit.edu	37	chr1	44132727	44132727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctaccaattttgctaccCgtcggtggattgagtacggc	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44132727	A	A	44132727	3	1	9	1	0	0	0	0	1	0	0	0	8198	652	23	1	906	1	KDM4A	1	44132727	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74470	44132727	205117894	310	8461											
KDM4A	9682	broad.mit.edu	37	chr1	44135021	44135021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaactcatatatgtgtccCgtgttagatgccatattgag	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44135021	A	A	44135021	1	1	9	0	1	0	0	0	0	0	0	0	8198	667	23	1		1	KDM4A	1	44135021	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2294	44135021	205115600	311	8462											
KDM4A	9682	broad.mit.edu	37	chr1	44137365	44137365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggctctggctcttcacGggattctatctcttctgatt	9	12	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44137365	T	T	44137365	3	4	9	1	0	0	0	0	1	0	0	0	8198	1116	39	1	1591	1	KDM4A	1	44137365	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2344	44137365	205113256	312	8463											
KDM4A	9682	broad.mit.edu	37	chr1	44156652	44156652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacatcaacctttctactcCttatcttgaggaggatggca	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44156652	A	A	44156652	3	1	9	1	0	0	0	0	1	0	0	0	8198	681	24	2	2224	2	KDM4A	1	44156652	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19287	44156652	205093969	313	8464											
KDM4A	9682	broad.mit.edu	37	chr1	44156683	44156683	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggatggcaccagcatactCgtttcctgcaagaagtgcag	12	10	0	1	rs35964309	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44156683	A	A	44156683	2	1	9	1	0	0	0	0	0	0	0	1	8198	871	31	3		3	KDM4A	1	44156683	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	44156683	205093938	314	8465											
ST3GAL3	6487	broad.mit.edu	37	chr1	44386084	44386084	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtccacagagtgcatcGgatggcttctggaaatctgt	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44386084	T	T	44386084	2	4	9	1	0	0	0	0	0	0	0	1	15334	1103	39	1		1	ST3GAL3	1	44386084	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	229401	44386084	204864537	315	8466											
IPO13	9670	broad.mit.edu	37	chr1	44423149	44423149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actattctgatgtggtgcctGggctcattggcctcatccca	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44423149	T	T	44423149	3	4	9	1	0	0	0	0	1	0	0	0	7864	1348	47	2	1494	2	IPO13	1	44423149	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37065	44423149	204827472	316	8467											
IPO13	9670	broad.mit.edu	37	chr1	44424086	44424086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcattttccttcctacccCacaactagatgtggccagga	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44424086	A	A	44424086	1	1	9	0	1	0	0	0	0	0	0	0	7864	609	21	2		2	IPO13	1	44424086	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	937	44424086	204826535	317	8468											
IPO13	9670	broad.mit.edu	37	chr1	44425815	44425815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcctcaatgtgtgttctGgggtaataggtctgaactgc	14	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44425815	T	T	44425815	1	4	9	0	1	0	0	0	0	0	0	0	7864	1363	47	2		2	IPO13	1	44425815	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1729	44425815	204824806	318	8469											
IPO13	9670	broad.mit.edu	37	chr1	44425870	44425870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaagtcctcctcaagtGggtcacagtgatggatagca	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44425870	T	T	44425870	1	4	9	0	1	0	0	0	0	0	0	0	7864	1363	47	2		2	IPO13	1	44425870	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	55	44425870	204824751	319	8470											
DPH2	1802	broad.mit.edu	37	chr1	44437603	44437603	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgctattagcctgtcctctGggtgctctagccccccagct	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44437603	C	C	44437603	2	2	9	1	0	0	0	0	0	0	0	1	4760	1335	47	4		4	DPH2	1	44437603	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11733	44437603	204813018	320	8471											
ATP6V0B	533	broad.mit.edu	37	chr1	44443691	44443691	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgactagatgatatgtgtGggtggggccgtgcctcactt	16	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44443691	T	T	44443691	1	4	9	0	1	0	0	0	0	0	0	0	1175	1363	47	2		2	ATP6V0B	1	44443691	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	6088	44443691	204806930	321	8472											
B4GALT2	8704	broad.mit.edu	37	chr1	44455900	44455900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtccatttagttggttGgggggtgtaggattttattt	17	2	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44455900	T	T	44455900	1	4	9	0	1	0	0	0	0	0	0	0	1276	1363	47	2		2	B4GALT2	1	44455900	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12209	44455900	204794721	322	8473											
B4GALT2	8704	broad.mit.edu	37	chr1	44456008	44456008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgaagctgaccatgaagcGggacggcattgggtcagtgc	15	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44456008	T	T	44456008	3	4	9	1	0	0	0	0	1	0	0	0	1276	1116	39	1	1029	1	B4GALT2	1	44456008	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108	44456008	204794613	323	8474											
CCDC24	149473	broad.mit.edu	37	chr1	44457897	44457897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcaggtggcgatgttacGggcactgctccaagaggctc	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44457897	T	T	44457897	3	4	9	1	0	0	0	0	1	0	0	0	2826	1116	39	1	146	1	CCDC24	1	44457897	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1889	44457897	204792724	324	8475											
SLC6A9	6536	broad.mit.edu	37	chr1	44468548	44468548	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaagacttgacccctcGgatgaggcagaggaagacga	13	11	0	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44468548	T	T	44468548	2	4	9	1	0	0	0	0	0	0	0	1	14805	1124	39	1		1	SLC6A9	1	44468548	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10651	44468548	204782073	325	8476											
SLC6A9	6536	broad.mit.edu	37	chr1	44475727	44475727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaagaagagggggatccCgcagaagatgagcatgatga	15	6	0	8			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44475727	A	A	44475727	3	1	9	1	0	0	0	0	1	0	0	0	14805	652	23	1	1716	1	SLC6A9	1	44475727	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7179	44475727	204774894	326	8477											
SLC6A9	6536	broad.mit.edu	37	chr1	44489887	44489887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagggcttgggactccCgttccttcccgcagtctggc	15	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44489887	A	A	44489887	1	1	9	0	1	0	0	0	0	0	0	0	14805	667	23	1		1	SLC6A9	1	44489887	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14160	44489887	204760734	327	8478											
KLF17	128209	broad.mit.edu	37	chr1	44569284	44569284	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcctgtaggtggcgatctCgatctcgatgtccagggcca	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44569284	T	T	44569284	1	4	9	0	1	0	0	0	0	0	0	0	8416	899	31	4		4	KLF17	1	44569284	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	79397	44569284	204681337	328	8479											
KLF17	128209	broad.mit.edu	37	chr1	44588045	44588045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaggttctctgttcttcGgggtcattttcacagcttta	9	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44588045	T	T	44588045	1	4	9	0	1	0	0	0	0	0	0	0	8416	1131	39	1		1	KLF17	1	44588045	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18761	44588045	204662576	329	8480											
DMAP1	55929	broad.mit.edu	37	chr1	44680066	44680066	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgactttcaagaggccCgagggcatgcaccgggaagt	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44680066	A	A	44680066	2	1	9	1	0	0	0	0	0	0	0	1	4616	639	23	1		1	DMAP1	1	44680066	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92021	44680066	204570555	330	8481											
DMAP1	55929	broad.mit.edu	37	chr1	44685589	44685589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatagggtgtacccaccCgaggctgtggatataggttg	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44685589	A	A	44685589	1	1	9	0	1	0	0	0	0	0	0	0	4616	667	23	1		1	DMAP1	1	44685589	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5523	44685589	204565032	331	8482											
ERI3	79033	broad.mit.edu	37	chr1	44774060	44774060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggccttccttcgccatcCattcatcgaccctctgaaaa	6	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44774060	A	A	44774060	3	1	9	1	0	0	0	0	1	0	0	0	5271	595	21	2	349	2	ERI3	1	44774060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88471	44774060	204476561	332	8483											
ERI3	79033	broad.mit.edu	37	chr1	44804706	44804706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttttctaaagcaatgatGgaacagttacctgaggatga	9	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44804706	T	T	44804706	1	4	9	0	1	0	0	0	0	0	0	0	5271	1363	47	2		2	ERI3	1	44804706	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30646	44804706	204445915	333	8484											
RNF220	55182	broad.mit.edu	37	chr1	44877962	44877962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatattcctttcaccaacGgttcctatacctttgcctct	4	14	2	0	rs147759221		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44877962	T	T	44877962	3	4	9	1	0	0	0	0	1	0	0	0	13594	1116	39	1	195	1	RNF220	1	44877962	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73256	44877962	204372659	334	8485											
RNF220	55182	broad.mit.edu	37	chr1	44878001	44878001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgtaccatcggcaaggtGgggtgccaggcacttttgcc	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44878001	T	T	44878001	3	4	9	1	0	0	0	0	1	0	0	0	13594	1348	47	2	234	2	RNF220	1	44878001	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	44878001	204372620	335	8486											
KIF2C	11004	broad.mit.edu	37	chr1	45205545	45205545	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcgttaagacttcgtaGggttagcgaaattgaggttt	14	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45205545	T	T	45205545	1	4	9	1	0	0	0	0	0	0	0	0	8369	1015	35	2		2	KIF2C	1	45205545	Translation_Start_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	327544	45205545	204045076	336	8487			1	4		4	4	99	N	G_C	2.860768e-05
KIF2C	11004	broad.mit.edu	37	chr1	45205603	45205603	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcttccttgctgactctccGaatggccatggactcgtcgc	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45205603	T	T	45205603	1	4	9	0	1	0	0	0	0	0	0	0	8369	1073	37	3		3	KIF2C	1	45205603	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	58	45205603	204045018	337	8488			1	4		4	4	99	N	G_C	2.860768e-05
KIF2C	11004	broad.mit.edu	37	chr1	45205618	45205618	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctccgaatggccatggactCgtcgcttcaggcccgcctgt	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45205618	A	A	45205618	4	1	9	1	0	0	0	0	0	1	0	0	8369	893	31	3	16	3	KIF2C	1	45205618	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	45205618	204045003	338	8489			1	4		4	4	99	N	G_C	2.860768e-05
KIF2C	11004	broad.mit.edu	37	chr1	45205643	45205643	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggcccgcctgtttccCggtctcgctatcaagatcca	8	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45205643	A	A	45205643	2	1	9	1	0	0	0	0	0	0	0	1	8369	639	23	1		1	KIF2C	1	45205643	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	45205643	204044978	339	8490			1	4		4	4	99	N	G_C	2.860768e-05
KIF2C	11004	broad.mit.edu	37	chr1	45220458	45220458	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaactgggaatttgccCgaatgattaaagaatttcgg	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45220458	A	A	45220458	2	1	9	1	0	0	0	0	0	0	0	1	8369	644	23	1		1	KIF2C	1	45220458	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14815	45220458	204030163	340	8491											
KIF2C	11004	broad.mit.edu	37	chr1	45221698	45221698	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcttcagactgactaatGggccttctgtttccagggag	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45221698	T	T	45221698	1	4	9	0	1	0	0	0	0	0	0	0	8369	1363	47	2		2	KIF2C	1	45221698	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1240	45221698	204028923	341	8492											
KIF2C	11004	broad.mit.edu	37	chr1	45232751	45232751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactaaccccatatgtacCgctaccctttcttccagatg	4	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45232751	A	A	45232751	1	1	9	0	1	0	0	0	0	0	0	0	8369	667	23	1		1	KIF2C	1	45232751	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11053	45232751	204017870	342	8493											
PLK3	1263	broad.mit.edu	37	chr1	45270367	45270367	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagcacttctccttctcCgtgggtgctgtgccccgggc	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45270367	A	A	45270367	2	1	9	1	0	0	0	0	0	0	0	1	12192	639	23	1		1	PLK3	1	45270367	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37616	45270367	203980254	343	8494											
PLK3	1263	broad.mit.edu	37	chr1	45271231	45271231	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtgacttttgtggccCgaaatcgtagtgcttgtact	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45271231	A	A	45271231	2	1	9	1	0	0	0	0	0	0	0	1	12192	644	23	1		1	PLK3	1	45271231	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	864	45271231	203979390	344	8495											
PTCH2	8643	broad.mit.edu	37	chr1	45292590	45292590	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgcgaaggttctccccCgtggtgtcgtatttgtcgtg	12	11	2	0	rs113617379	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45292590	A	A	45292590	2	1	9	1	0	0	0	0	0	0	0	1	12837	639	23	1		1	PTCH2	1	45292590	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21359	45292590	203958031	345	8496											
PTCH2	8643	broad.mit.edu	37	chr1	45297648	45297648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctctcaggacacttaccCgctcaatcattccattttca	3	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45297648	A	A	45297648	3	1	9	1	0	0	0	0	1	0	0	0	12837	666	23	1	3183	1	PTCH2	1	45297648	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5058	45297648	203952973	346	8497											
EIF2B3	8891	broad.mit.edu	37	chr1	45340362	45340362	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacatacccttcctccacaGtgactgagttcatgagaagg	8	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45340362	C	C	45340362	3	2	9	1	0	0	0	0	1	0	0	0	5042	1029	36	4	217	4	EIF2B3	1	45340362	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42714	45340362	203910259	347	8498											
EIF2B3	8891	broad.mit.edu	37	chr1	45347335	45347335	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctttttcttcttgtcCctgttgtgaggaagctgagg	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45347335	A	A	45347335	4	1	9	1	0	0	0	0	0	1	0	0	5042	632	22	2	686	2	EIF2B3	1	45347335	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6973	45347335	203903286	348	8499											
EIF2B3	8891	broad.mit.edu	37	chr1	45446797	45446797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagttaggtctgtcatcCgagatcctccacctactgcc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45446797	A	A	45446797	3	1	9	1	0	0	0	0	1	0	0	0	5042	652	23	1	1395	1	EIF2B3	1	45446797	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99462	45446797	203803824	349	8500											
HECTD3	79654	broad.mit.edu	37	chr1	45471766	45471766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgggtacatacatgtccCgagcctcaccagtgccattg	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45471766	A	A	45471766	3	1	9	1	0	0	0	0	1	0	0	0	7108	652	23	1	869	1	HECTD3	1	45471766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24969	45471766	203778855	350	8501											
HECTD3	79654	broad.mit.edu	37	chr1	45474368	45474368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggagacgaacatcaatccCatcatctgggggaaggggtc	13	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45474368	A	A	45474368	3	1	9	1	0	0	0	0	1	0	0	0	7108	594	21	2	1563	2	HECTD3	1	45474368	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2602	45474368	203776253	351	8502											
HECTD3	79654	broad.mit.edu	37	chr1	45475081	45475081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttcttcaggttgtcccCttcacccccatagaccacca	5	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45475081	A	A	45475081	3	1	9	1	0	0	0	0	1	0	0	0	7108	681	24	2	1700	2	HECTD3	1	45475081	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	713	45475081	203775540	352	8503											
ZSWIM5	57643	broad.mit.edu	37	chr1	45486261	45486261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactgtcactaggtcagcGgtctaaactgtggatggcct	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45486261	T	T	45486261	1	4	9	0	1	0	0	0	0	0	0	0	18373	1131	39	1		1	ZSWIM5	1	45486261	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11180	45486261	203764360	353	8504											
ZSWIM5	57643	broad.mit.edu	37	chr1	45501684	45501684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcatgggccaaagacacCgtgacaagagactcttttct	11	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45501684	A	A	45501684	1	1	9	0	1	0	0	0	0	0	0	0	18373	667	23	1		1	ZSWIM5	1	45501684	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15423	45501684	203748937	354	8505											
MUTYH	4595	broad.mit.edu	37	chr1	45795072	45795072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccatgcggggctttttcCgactgcacggagaggacacc	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45795072	A	A	45795072	3	1	9	1	0	0	0	0	1	0	0	0	10087	652	23	1	97	1	MUTYH	1	45795072	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	293388	45795072	203455549	355	8506											
MUTYH	4595	broad.mit.edu	37	chr1	45797851	45797851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttactctctggcgtgccCggcacaggctctccacaggg	13	15	2	0	rs140156029		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45797851	A	A	45797851	3	1	9	1	0	0	0	0	1	0	0	0	10087	652	23	1	757	1	MUTYH	1	45797851	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2779	45797851	203452770	356	8507											
MUTYH	4595	broad.mit.edu	37	chr1	45798839	45798839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcatgacctctgagaccCacactgggggaaaggggttg	15	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45798839	A	A	45798839	3	1	9	1	0	0	0	0	1	0	0	0	10087	595	21	2	1305	2	MUTYH	1	45798839	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	988	45798839	203451782	357	8508											
TOE1	114034	broad.mit.edu	37	chr1	45808275	45808275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgctgagtttcatgccCgtttcgtggcctcctactta	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45808275	A	A	45808275	3	1	9	1	0	0	0	0	1	0	0	0	16472	652	23	1	734	1	TOE1	1	45808275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9436	45808275	203442346	358	8509											
TESK2	10420	broad.mit.edu	37	chr1	45810718	45810718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggcttgagcagctggtaGggcagatgcccggaatggtg	18	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45810718	T	T	45810718	3	4	9	1	0	0	0	0	1	0	0	0	15890	991	35	2	209	2	TESK2	1	45810718	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2443	45810718	203439903	359	8510											
TESK2	10420	broad.mit.edu	37	chr1	45813598	45813598	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctacacacctgacatcGgggatcttctcagccaggcc	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45813598	T	T	45813598	2	4	9	1	0	0	0	0	0	0	0	1	15890	1103	39	1		1	TESK2	1	45813598	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2880	45813598	203437023	360	8511											
TMEM69	51249	broad.mit.edu	37	chr1	46158899	46158899	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagtactctttcccagtGggactaagaaccagcagaac	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46158899	T	T	46158899	2	4	9	1	0	0	0	0	0	0	0	1	16321	1335	47	2		2	TMEM69	1	46158899	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	345301	46158899	203091722	361	8512											
TMEM69	51249	broad.mit.edu	37	chr1	46159628	46159628	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgcccagctgctgcccCgtctgggaagtgaggagcgc	14	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46159628	A	A	46159628	1	1	9	0	1	0	0	0	0	0	0	0	16321	667	23	1		1	TMEM69	1	46159628	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	729	46159628	203090993	362	8513											
MAST2	23139	broad.mit.edu	37	chr1	46487611	46487611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccactgactatctctctcCcttggtacaggagtttgacc	7	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46487611	A	A	46487611	1	1	9	0	1	0	0	0	0	0	0	0	9417	638	22	2		2	MAST2	1	46487611	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	327983	46487611	202763010	363	8514											
MAST2	23139	broad.mit.edu	37	chr1	46487708	46487709	+	Missense_Mutation	DNP	CC	GA	GA													gggattaaatgtgacattccCcgctacatcgttagccagct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	46487709	GA	GA	46487708	3	3	9	1	0	0	0	0	1	0	0	0	9417	610	22	4	1423	4	MAST2	1	46487708	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	97	46487708	202762913	364	8515											
MAST2	23139	broad.mit.edu	37	chr1	46493515	46493515	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatattgaaaaggatgccCgggaattcctggacaagcag	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46493515	A	A	46493515	2	1	9	1	0	0	0	0	0	0	0	1	9417	643	23	1		1	MAST2	1	46493515	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5807	46493515	202757106	365	8516											
PIK3R3	8503	broad.mit.edu	37	chr1	46597412	46597412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgcaaatctcctcatccCgaacctagcgcacccaggaa	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46597412	A	A	46597412	1	1	9	0	1	0	0	0	0	0	0	0	12015	667	23	1		1	PIK3R3	1	46597412	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103897	46597412	202653209	366	8517											
FAAH	2166	broad.mit.edu	37	chr1	46874161	46874161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctcagcccctgcgtgtgGggtactatgagactgacaac	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46874161	T	T	46874161	3	4	9	1	0	0	0	0	1	0	0	0	5399	1232	43	2	1012	2	FAAH	1	46874161	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	276749	46874161	202376460	367	8518											
ATPAF1	64756	broad.mit.edu	37	chr1	47101570	47101570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaaggtctccactaaccCgtaggtctctttccgatcag	8	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47101570	A	A	47101570	3	1	9	1	0	0	0	0	1	0	0	0	1204	652	23	1	125	1	ATPAF1	1	47101570	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	227409	47101570	202149051	368	8519											
CYP4A11	1579	broad.mit.edu	37	chr1	47398375	47398375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggctcacaaagatcagaGggttgaccagagacttccct	10	11	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47398375	T	T	47398375	1	4	9	0	1	0	0	0	0	0	0	0	4216	1015	35	2		2	CYP4A11	1	47398375	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	296805	47398375	201852246	369	8520											
CYP4A22	284541	broad.mit.edu	37	chr1	47611506	47611506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccccatgcaaatgatcGgtcttctctctctttccaac	5	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47611506	T	T	47611506	1	4	9	0	1	0	0	0	0	0	0	0	4217	1131	39	1		1	CYP4A22	1	47611506	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	213131	47611506	201639115	370	8521											
CYP4A22	284541	broad.mit.edu	37	chr1	47611901	47611901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgatctttgtgagccCgatgttcatatgtggcatct	9	11	4	2	rs911906	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47611901	A	A	47611901	1	1	9	0	1	0	0	0	0	0	0	0	4217	667	23	1		1	CYP4A22	1	47611901	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	395	47611901	201638720	371	8522											
SPATA6	54558	broad.mit.edu	37	chr1	48764355	48764355	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcattgagaaattgacacGgacactaatgaggtttatca	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48764355	T	T	48764355	1	4	9	0	1	0	0	0	0	0	0	0	15129	1131	39	1		1	SPATA6	1	48764355	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1152454	48764355	200486266	372	8523											
SPATA6	54558	broad.mit.edu	37	chr1	48865184	48865184	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaagaaattgtaggctgttCgtagttttttgcatttatac	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48865184	A	A	48865184	4	1	9	1	0	0	0	0	0	1	0	0	15129	893	31	3	875	3	SPATA6	1	48865184	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100829	48865184	200385437	373	8524											
ELAVL4	1996	broad.mit.edu	37	chr1	50610427	50610427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgtgttcaaaatctatGggctggcctaaaaatagaaa	9	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50610427	T	T	50610427	1	4	9	0	1	0	0	0	0	0	0	0	5094	1363	47	2		2	ELAVL4	1	50610427	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1745243	50610427	198640194	374	8525											
FAF1	11124	broad.mit.edu	37	chr1	51267282	51267282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctaagtcatcttaactGgtaagcactttataacatac	5	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51267282	T	T	51267282	1	4	9	0	1	0	0	0	0	0	0	0	5415	1363	47	2		2	FAF1	1	51267282	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	656855	51267282	197983339	375	8526											
FAF1	11124	broad.mit.edu	37	chr1	51425534	51425534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagcgcgcacctgggaggCagacggcacctcctgcgacc	14	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51425534	A	A	51425534	1	1	9	0	1	0	0	0	0	0	0	0	5415	725	25	3		3	FAF1	1	51425534	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	158252	51425534	197825087	376	8527											
EPS15	2060	broad.mit.edu	37	chr1	51826958	51826958	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggggctatcgttgcctGggaaaggctgaaatggatca	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51826958	T	T	51826958	3	4	9	1	0	0	0	0	1	0	0	0	5234	1348	47	2	269	2	EPS15	1	51826958	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	401424	51826958	197423663	377	8528											
EPS15	2060	broad.mit.edu	37	chr1	51937405	51937405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgtgtcggctaaatccCaaatctgaaatttaggggga	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51937405	A	A	51937405	3	1	9	1	0	0	0	0	1	0	0	0	5234	595	21	2	2706	2	EPS15	1	51937405	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110447	51937405	197313216	378	8529											
NRD1	4898	broad.mit.edu	37	chr1	52260317	52260317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgggtcactgaggcaccCaaaaactataagaagctagg	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52260317	A	A	52260317	1	1	9	0	1	0	0	0	0	0	0	0	10740	609	21	2		2	NRD1	1	52260317	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	322912	52260317	196990304	379	8530											
NRD1	4898	broad.mit.edu	37	chr1	52303327	52303327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacttgagaattttctacCtaaaaaattcagacctgaga	5	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52303327	A	A	52303327	1	1	9	0	1	0	0	0	0	0	0	0	10740	696	24	2		2	NRD1	1	52303327	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43010	52303327	196947294	380	8531											
ZFYVE9	9372	broad.mit.edu	37	chr1	52645974	52645974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcaacaacctgcataccCagttatcctgataggaatct	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52645974	A	A	52645974	1	1	9	0	1	0	0	0	0	0	0	0	17797	609	21	2		2	ZFYVE9	1	52645974	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	342647	52645974	196604647	381	8532											
ZFYVE9	9372	broad.mit.edu	37	chr1	52719470	52719470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggcaatcagatggctccCagcctcatttagtgaacatc	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52719470	A	A	52719470	1	1	9	0	1	0	0	0	0	0	0	0	17797	609	21	2		2	ZFYVE9	1	52719470	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	73496	52719470	196531151	382	8533											
ZFYVE9	9372	broad.mit.edu	37	chr1	52769579	52769579	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactagcatcaaaattccCagcaacagatacaatgaggt	6	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52769579	A	A	52769579	2	1	9	1	0	0	0	0	0	0	0	1	17797	581	21	2		2	ZFYVE9	1	52769579	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50109	52769579	196481042	383	8534											
CC2D1B	200014	broad.mit.edu	37	chr1	52834757	52834757	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcctctccaagatctgccGagaagtacagaaaacactag	8	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52834757	T	T	52834757	1	4	9	0	1	0	0	0	0	0	0	0	2753	1073	37	3		3	CC2D1B	1	52834757	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	65178	52834757	196415864	384	8535											
ORC1L	4998	broad.mit.edu	37	chr1	52850843	52850843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgactcaccctccggtatGgtcaaggagtttgctttcca	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52850843	T	T	52850843	3	4	9	1	0	0	0	0	1	0	0	0	11355	1348	47	2	1044	2	ORC1L	1	52850843	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16086	52850843	196399778	385	8536											
ORC1L	4998	broad.mit.edu	37	chr1	52863505	52863505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcggacaaaccactgtactCgagcacgtttcttaggagga	10	10	1	0	rs147105653		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52863505	A	A	52863505	3	1	9	1	0	0	0	0	1	0	0	0	11355	884	31	3	2387	3	ORC1L	1	52863505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12662	52863505	196387116	386	8537											
ZCCHC11	23318	broad.mit.edu	37	chr1	52902451	52902451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactgctattcctctgacGggccagcttgacctctgggc	10	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52902451	T	T	52902451	3	4	9	1	0	0	0	0	1	0	0	0	17706	1116	39	1	819	1	ZCCHC11	1	52902451	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38946	52902451	196348170	387	8538											
FAM159A	348378	broad.mit.edu	37	chr1	53122828	53122828	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcttctcccagcaaagatAcccagccctgctgtggaccc	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53122828	C	C	53122828	1	2	9	0	1	0	0	0	0	0	0	0	5514	406	14	5		5	FAM159A	1	53122828	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	220377	53122828	196127793	388	8539											
ZYG11B	79699	broad.mit.edu	37	chr1	53245583	53245583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaagcgttacagtgaacGggcattctttgttcgggaag	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53245583	T	T	53245583	3	4	9	1	0	0	0	0	1	0	0	0	18382	1116	39	1	1024	1	ZYG11B	1	53245583	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	122755	53245583	196005038	389	8540											
SCP2	6342	broad.mit.edu	37	chr1	53453728	53453728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaacgctggttgatagagGagataatacatatggaggaa	13	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53453728	T	T	53453728	3	4	9	1	0	0	0	0	1	0	0	0	14047	1174	41	3	1043	3	SCP2	1	53453728	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	208145	53453728	195796893	390	8541											
SCP2	6342	broad.mit.edu	37	chr1	53458911	53458911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcttgtctttttctttcCgtgttggttctggtgaagga	10	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53458911	A	A	53458911	1	1	9	0	1	0	0	0	0	0	0	0	14047	667	23	1		1	SCP2	1	53458911	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5183	53458911	195791710	391	8542											
LRP8	7804	broad.mit.edu	37	chr1	53728134	53728134	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccagggtgattccgttGggccattcaatattgtctga	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53728134	T	T	53728134	2	4	9	1	0	0	0	0	0	0	0	1	9050	1335	47	2		2	LRP8	1	53728134	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	269223	53728134	195522487	392	8543											
MRPL37	51253	broad.mit.edu	37	chr1	54681840	54681840	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggtcttggagcagccCgtggtggtgcagagcgtggg	19	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54681840	A	A	54681840	2	1	9	1	0	0	0	0	0	0	0	1	9894	639	23	1		1	MRPL37	1	54681840	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	953706	54681840	194568781	393	8544											
SSBP3	23648	broad.mit.edu	37	chr1	54692791	54692791	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgctctctcagcgtctcGgagaaggggggatcacacac	13	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54692791	T	T	54692791	1	4	9	0	1	0	0	0	0	0	0	0	15299	1131	39	1		1	SSBP3	1	54692791	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	10951	54692791	194557830	394	8545											
SSBP3	23648	broad.mit.edu	37	chr1	54693963	54693963	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtggaggaagttccctcCtagctcgccgtcatctcgag	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54693963	A	A	54693963	4	1	9	1	0	0	0	0	0	1	0	0	15299	690	24	2	72	2	SSBP3	1	54693963	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1172	54693963	194556658	395	8546											
C1orf175	374977	broad.mit.edu	37	chr1	55174763	55174763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctggtaagtcatgcccCgcattggtgaaatttcaggg	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55174763	A	A	55174763	1	1	9	0	1	0	0	0	0	0	0	0	2036	667	23	1		1	C1orf175	1	55174763	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	480800	55174763	194075858	396	8547											
DHCR24	1718	broad.mit.edu	37	chr1	55341814	55341814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcatctcaaaccttccCaaacactcactgcagggatt	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55341814	A	A	55341814	1	1	9	0	1	0	0	0	0	0	0	0	4516	609	21	2		2	DHCR24	1	55341814	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	167051	55341814	193908807	397	8548											
USP24	23358	broad.mit.edu	37	chr1	55547007	55547007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcttaccaacattcctttGggatgagacatctgaatgca	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55547007	T	T	55547007	3	4	9	1	0	0	0	0	1	0	0	0	17181	1357	47	2	836	2	USP24	1	55547007	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	205193	55547007	193703614	398	8549											
USP24	23358	broad.mit.edu	37	chr1	55622695	55622695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaataattccctttatacGgtcacagtattgtgcttggt	7	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55622695	T	T	55622695	3	4	9	1	0	0	0	0	1	0	0	0	17181	1116	39	1	6718	1	USP24	1	55622695	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75688	55622695	193627926	399	8550											
C1orf168	199920	broad.mit.edu	37	chr1	57216751	57216751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctggccagctttgggccCtcagggcagggatttgtctg	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57216751	A	A	57216751	3	1	9	1	0	0	0	0	1	0	0	0	2032	680	24	2	881	2	C1orf168	1	57216751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1594056	57216751	192033870	400	8551											
DAB1	1600	broad.mit.edu	37	chr1	57480707	57480707	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgagggagggctggtcGggtttgcgggagggcacggg	24	6	0	1	rs139347835		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57480707	T	T	57480707	2	4	9	1	0	0	0	0	0	0	0	1	4250	1103	39	1		1	DAB1	1	57480707	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	263956	57480707	191769914	401	8552											
FGGY	55277	broad.mit.edu	37	chr1	59787238	59787238	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaatgtctggtggagaacAgaaaccagagaggtactatg	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59787238	T	T	59787238	3	4	9	1	0	0	0	0	1	0	0	0	5928	188	7	5	19	5	FGGY	1	59787238	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	2306531	59787238	189463383	402	8553											
FGGY	55277	broad.mit.edu	37	chr1	59844450	59844450	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatttgctgggataaggcGggacatttctttgatctccc	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59844450	T	T	59844450	2	4	9	1	0	0	0	0	0	0	0	1	5928	1103	39	1		1	FGGY	1	59844450	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57212	59844450	189406171	403	8554											
FGGY	55277	broad.mit.edu	37	chr1	59978144	59978144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgcctacagccaaaacCgtattcaaatggaatattcc	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59978144	A	A	59978144	1	1	9	0	1	0	0	0	0	0	0	0	5928	667	23	1		1	FGGY	1	59978144	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	133694	59978144	189272477	404	8555											
FGGY	55277	broad.mit.edu	37	chr1	60133044	60133044	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcctcagcaagaatccCctttttgtgcaaatgcatgc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60133044	A	A	60133044	2	1	9	1	0	0	0	0	0	0	0	1	5928	610	22	2		2	FGGY	1	60133044	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	154900	60133044	189117577	405	8556											
FGGY	55277	broad.mit.edu	37	chr1	60133065	60133065	+	Silent	SNP	G	T	T													ctttttgtgcaaatgcatgcGgacattactggtaagtctgg					rs149200798	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60133065	T	T	60133065	2	4	9	1	0	0	0	0	0	0	0	1	5928	1103	39	1		1	FGGY	1	60133065	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	60133065	189117556	406	8557	29	2									
FGGY	55277	broad.mit.edu	37	chr1	60133075	60133075	+	Missense_Mutation	SNP	G	T	T													aaatgcatgcggacattactGgtaagtctgggaaagaggag					rs115318188	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60133075	T	T	60133075	3	4	9	1	0	0	0	0	1	0	0	0	5928	1362	47	2	1539	2	FGGY	1	60133075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	60133075	189117546	407	8558	29	2									
FGGY	55277	broad.mit.edu	37	chr1	60133135	60133135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagcaaatgggcatggcCaagttctgggtgaagtgaga	16	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60133135	A	A	60133135	1	1	9	0	1	0	0	0	0	0	0	0	5928	609	21	2		2	FGGY	1	60133135	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	60133135	189117486	408	8559											
FGGY	55277	broad.mit.edu	37	chr1	60223646	60223646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgggaaagttgtgttccCgagactacaggataaaaagt	12	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60223646	A	A	60223646	3	1	9	1	0	0	0	0	1	0	0	0	5928	652	23	1	1686	1	FGGY	1	60223646	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90511	60223646	189026975	409	8560											
HOOK1	51361	broad.mit.edu	37	chr1	60299082	60299082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttaatattgtagtttttGgggcagcagatttcagaagc	10	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60299082	T	T	60299082	3	4	9	1	0	0	0	0	1	0	0	0	7349	1339	47	2	297	2	HOOK1	1	60299082	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75436	60299082	188951539	410	8561											
HOOK1	51361	broad.mit.edu	37	chr1	60299111	60299111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttcagaagcacttatccCtgatttaaaccaaataaccg	5	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60299111	A	A	60299111	3	1	9	1	0	0	0	0	1	0	0	0	7349	681	24	2	326	2	HOOK1	1	60299111	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	60299111	188951510	411	8562											
HOOK1	51361	broad.mit.edu	37	chr1	60299130	60299130	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatttaaaccaaataacCgaatgttcagatccagtgga	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60299130	A	A	60299130	2	1	9	1	0	0	0	0	0	0	0	1	7349	639	23	1		1	HOOK1	1	60299130	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	60299130	188951491	412	8563											
HOOK1	51361	broad.mit.edu	37	chr1	60325969	60325969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagctagaacagaaacacCgtaaaatgaatgaactggaa	9	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60325969	A	A	60325969	3	1	9	1	0	0	0	0	1	0	0	0	7349	652	23	1	1559	1	HOOK1	1	60325969	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26839	60325969	188924652	413	8564											
HOOK1	51361	broad.mit.edu	37	chr1	60328443	60328443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtaaatgcttatgaccCatcttacaataggctgagca	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60328443	A	A	60328443	1	1	9	0	1	0	0	0	0	0	0	0	7349	609	21	2		2	HOOK1	1	60328443	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2474	60328443	188922178	414	8565											
HOOK1	51361	broad.mit.edu	37	chr1	60330334	60330334	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagcagaagttggaagctCatatgtaagtaaaactgata	9	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60330334	A	A	60330334	3	1	9	1	0	0	0	0	1	0	0	0	7349	826	29	3	1723	3	HOOK1	1	60330334	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1891	60330334	188920287	415	8566											
CYP2J2	1573	broad.mit.edu	37	chr1	60359349	60359349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaacagcgcagaggcGgtgactgactggggaaatgg	18	7	0	4	rs144581123		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60359349	T	T	60359349	3	4	9	1	0	0	0	0	1	0	0	0	4205	1116	39	1	29	1	CYP2J2	1	60359349	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29015	60359349	188891272	416	8567			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60359376	60359376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactggggaaatggtgatacCcattctaaacttcaggctca	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60359376	A	A	60359376	3	1	9	1	0	0	0	0	1	0	0	0	4205	623	22	2	56	2	CYP2J2	1	60359376	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	60359376	188891245	417	8568			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60359411	60359411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcagcttctcattgtttGggggcctgaaggtaaatttt	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60359411	T	T	60359411	3	4	9	1	0	0	0	0	1	0	0	0	4205	1348	47	2	91	2	CYP2J2	1	60359411	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	60359411	188891210	418	8569			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60359439	60359439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtaaatttttgcataaGggaagtgaagaaaataaaca	10	2	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60359439	T	T	60359439	3	4	9	1	0	0	0	0	1	0	0	0	4205	1000	35	2	119	2	CYP2J2	1	60359439	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	60359439	188891182	419	8570			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60359468	60359468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaataaacagctcagtcCtggccaactgttctccgagg	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60359468	A	A	60359468	3	1	9	1	0	0	0	0	1	0	0	0	4205	681	24	2	148	2	CYP2J2	1	60359468	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	60359468	188891153	420	8571			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60359484	60359484	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcctggccaactgttctcCgaggcatgcccgctttcctg	10	15	1	0	rs143299525		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60359484	A	A	60359484	4	1	9	1	0	0	0	0	0	1	0	0	4205	661	23	1	164	1	CYP2J2	1	60359484	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	60359484	188891137	421	8572			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60359495	60359495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttctccgaggcatgccCgctttcctgtaagacaaaat	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60359495	A	A	60359495	3	1	9	1	0	0	0	0	1	0	0	0	4205	652	23	1	175	1	CYP2J2	1	60359495	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	60359495	188891126	422	8573			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60359524	60359524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagacaaaatcaaaagacGggttatcttctcaggtggca	10	7	3	2	rs11572326	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60359524	T	T	60359524	1	4	9	0	1	0	0	0	0	0	0	0	4205	1131	39	1		1	CYP2J2	1	60359524	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29	60359524	188891097	423	8574			2	5	15153706	8	8	176	N	G_C	1.810248e-11
CYP2J2	1573	broad.mit.edu	37	chr1	60377372	60377372	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtactcaaagcgttctcCgaaggtgatggagcaaatga	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60377372	A	A	60377372	4	1	9	1	0	0	0	0	0	1	0	0	4205	661	23	1	940	1	CYP2J2	1	60377372	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17848	60377372	188873249	424	8575											
CYP2J2	1573	broad.mit.edu	37	chr1	60377879	60377879	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggtgttgggcctcctcctGaatgcgttcctctaagctct	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60377879	T	T	60377879	3	4	9	1	0	0	0	0	1	0	0	0	4205	1299	45	3	1058	3	CYP2J2	1	60377879	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	507	60377879	188872742	425	8576											
CYP2J2	1573	broad.mit.edu	37	chr1	60392200	60392200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgctaggcaccttctccCactcctaccagctgaacctc	5	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60392200	A	A	60392200	1	1	9	0	1	0	0	0	0	0	0	0	4205	609	21	2		2	CYP2J2	1	60392200	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14321	60392200	188858421	426	8577											
C1orf87	127795	broad.mit.edu	37	chr1	60456364	60456364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatagctcctttaagtacCgcagtgctggctccaagagc	9	12	1	1	rs138699493		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60456364	A	A	60456364	3	1	9	1	0	0	0	0	1	0	0	0	2086	652	23	1	22	1	C1orf87	1	60456364	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64164	60456364	188794257	427	8578											
C1orf87	127795	broad.mit.edu	37	chr1	60456440	60456440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgattttctgagggctcaGggacaggttgtaaatgagat	14	5	2	2	rs146782679		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60456440	T	T	60456440	3	4	9	1	0	0	0	0	1	0	0	0	2086	991	35	2	98	2	C1orf87	1	60456440	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	76	60456440	188794181	428	8579											
C1orf87	127795	broad.mit.edu	37	chr1	60456492	60456492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggcgtctggctcgttcCttctccagaactcctgtgat	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60456492	A	A	60456492	3	1	9	1	0	0	0	0	1	0	0	0	2086	680	24	2	150	2	C1orf87	1	60456492	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	60456492	188794129	429	8580											
C1orf87	127795	broad.mit.edu	37	chr1	60499359	60499359	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgaaaaggttatccaccCaaggcagctgcatgctttcc	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60499359	A	A	60499359	1	1	9	0	1	0	0	0	0	0	0	0	2086	609	21	2		2	C1orf87	1	60499359	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42867	60499359	188751262	430	8581											
C1orf87	127795	broad.mit.edu	37	chr1	60506761	60506761	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggataaggactggtctcCggttggtacagagctgcagt	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60506761	A	A	60506761	4	1	9	1	0	0	0	0	0	1	0	0	2086	661	23	1	1291	1	C1orf87	1	60506761	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7402	60506761	188743860	431	8582											
C1orf87	127795	broad.mit.edu	37	chr1	60520856	60520856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaattatcaagataaacgtGggtattttttgtcactcaca	6	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60520856	T	T	60520856	1	4	9	0	1	0	0	0	0	0	0	0	2086	1363	47	2		2	C1orf87	1	60520856	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14095	60520856	188729765	432	8583											
C1orf87	127795	broad.mit.edu	37	chr1	60538291	60538291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcattgcatctgatccacGgggagtcttccaggctgaag	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60538291	T	T	60538291	3	4	9	1	0	0	0	0	1	0	0	0	2086	1116	39	1	1659	1	C1orf87	1	60538291	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17435	60538291	188712330	433	8584											
NFIA	4774	broad.mit.edu	37	chr1	61553820	61553820	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttttgttcattttcctaGgatgaatttcatcctttcat	4	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61553820	T	T	61553820	5	4	9	1	0	0	0	0	0	0	1	0	10465	1014	35	2	179	2	NFIA	1	61553820	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	1015529	61553820	187696801	434	8585			3	6	1194296	7	7	595	N	G_C	1.707007e-06
NFIA	4774	broad.mit.edu	37	chr1	61553899	61553899	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggttcaacctgcaggccCgaaaacgaaaatacttcaaa	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61553899	A	A	61553899	2	1	9	1	0	0	0	0	0	0	0	1	10465	644	23	1		1	NFIA	1	61553899	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	61553899	187696722	435	8586			3	6	1194296	7	7	595	N	G_C	1.707007e-06
NFIA	4774	broad.mit.edu	37	chr1	61554048	61554048	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcggaaagatatccgaccCgaatatcgagaggattttgt	11	7	0	2	rs41289414	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61554048	A	A	61554048	2	1	9	1	0	0	0	0	0	0	0	1	10465	639	23	1		1	NFIA	1	61554048	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	61554048	187696573	436	8587			3	6	1194296	7	7	595	N	G_C	1.707007e-06
NFIA	4774	broad.mit.edu	37	chr1	61554116	61554116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttgtgttctttccaaccCagaccagaaaggcaagatgc	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61554116	A	A	61554116	3	1	9	1	0	0	0	0	1	0	0	0	10465	594	21	2	475	2	NFIA	1	61554116	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	61554116	187696505	437	8588			3	6	1194296	7	7	595	N	G_C	1.707007e-06
NFIA	4774	broad.mit.edu	37	chr1	61554215	61554215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattttgtttaaaggtattcCgctggaaagtactgatggcg	12	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61554215	A	A	61554215	3	1	9	1	0	0	0	0	1	0	0	0	10465	652	23	1	574	1	NFIA	1	61554215	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99	61554215	187696406	438	8589			3	6	1194296	7	7	595	N	G_C	1.707007e-06
NFIA	4774	broad.mit.edu	37	chr1	61554289	61554289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggctctgtgtccaacccCatcacataggggtttctgtt	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61554289	A	A	61554289	3	1	9	1	0	0	0	0	1	0	0	0	10465	594	21	2	648	2	NFIA	1	61554289	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74	61554289	187696332	439	8590			3	6	1194296	7	7	595	N	G_C	1.707007e-06
NFIA	4774	broad.mit.edu	37	chr1	61554414	61554414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctttcctgatggcctcCgcgttatgccggattcttcc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61554414	A	A	61554414	1	1	9	0	1	0	0	0	0	0	0	0	10465	667	23	1		1	NFIA	1	61554414	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	125	61554414	187696207	440	8591			3	6	1194296	7	7	595	N	G_C	1.707007e-06
NFIA	4774	broad.mit.edu	37	chr1	61818146	61818146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagctgcaggaactggccCaaatttttctctctcagatt	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61818146	A	A	61818146	3	1	9	1	0	0	0	0	1	0	0	0	10465	594	21	2	889	2	NFIA	1	61818146	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	263732	61818146	187432475	441	8592											
NFIA	4774	broad.mit.edu	37	chr1	61818168	61818168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttttctctctcagatttGgaaagttcttcatactacag	5	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61818168	T	T	61818168	3	4	9	1	0	0	0	0	1	0	0	0	10465	1339	47	2	911	2	NFIA	1	61818168	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	61818168	187432453	442	8593											
NFIA	4774	broad.mit.edu	37	chr1	61848940	61848940	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccacactgaagaagtcGgagaagtctggtttcagcag	11	10	2	3	rs148640543	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61848940	T	T	61848940	2	4	9	1	0	0	0	0	0	0	0	1	10465	1103	39	1		1	NFIA	1	61848940	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30772	61848940	187401681	443	8594											
NFIA	4774	broad.mit.edu	37	chr1	61849013	61849013	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgttcacacagcatcacCgacctgtcattacaggaccc	8	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61849013	A	A	61849013	2	1	9	1	0	0	0	0	0	0	0	1	10465	644	23	1		1	NFIA	1	61849013	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	73	61849013	187401608	444	8595											
NFIA	4774	broad.mit.edu	37	chr1	61849033	61849033	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacctgtcattacaggaccCagaggtgagctgctccacag	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61849033	A	A	61849033	2	1	9	1	0	0	0	0	0	0	0	1	10465	581	21	2		2	NFIA	1	61849033	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	61849033	187401588	445	8596											
NFIA	4774	broad.mit.edu	37	chr1	61869714	61869714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaggaggaagttgaatcGggttcagctatgacaaagca	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61869714	T	T	61869714	1	4	9	0	1	0	0	0	0	0	0	0	10465	1131	39	1		1	NFIA	1	61869714	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20681	61869714	187380907	446	8597											
INADL	10207	broad.mit.edu	37	chr1	62232077	62232077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaataactcgactgtatctGggttatttccgtggaccccg	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62232077	T	T	62232077	3	4	9	1	0	0	0	0	1	0	0	0	7801	1348	47	2	326	2	INADL	1	62232077	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	362363	62232077	187018544	447	8598											
INADL	10207	broad.mit.edu	37	chr1	62232096	62232096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttatttccgtggacccCgaagttgggaaatgaagact	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62232096	A	A	62232096	3	1	9	1	0	0	0	0	1	0	0	0	7801	652	23	1	345	1	INADL	1	62232096	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	62232096	187018525	448	8599											
INADL	10207	broad.mit.edu	37	chr1	62240886	62240886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaatttgtaggtttgttgGggccatgttgaagaggttga	14	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62240886	T	T	62240886	3	4	9	1	0	0	0	0	1	0	0	0	7801	1241	43	2	751	2	INADL	1	62240886	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8790	62240886	187009735	449	8600											
INADL	10207	broad.mit.edu	37	chr1	62241005	62241005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctggaggattagcagatcGagtaagtcaaccttccttgt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62241005	T	T	62241005	3	4	9	1	0	0	0	0	1	0	0	0	7801	1072	37	3	870	3	INADL	1	62241005	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119	62241005	187009616	450	8601											
INADL	10207	broad.mit.edu	37	chr1	62288555	62288555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcaaaatagcactggatGgaggatgaatagccggatgt	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62288555	T	T	62288555	1	4	9	0	1	0	0	0	0	0	0	0	7801	1363	47	2		2	INADL	1	62288555	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47550	62288555	186962066	451	8602											
INADL	10207	broad.mit.edu	37	chr1	62288674	62288674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattcctttgatgggcacCattatatttcttcaattgtt	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62288674	A	A	62288674	3	1	9	1	0	0	0	0	1	0	0	0	7801	594	21	2	1795	2	INADL	1	62288674	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	119	62288674	186961947	452	8603											
INADL	10207	broad.mit.edu	37	chr1	62330249	62330249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctcaagaggcaagaaccGggaggactgtctattcccag	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62330249	T	T	62330249	3	4	9	1	0	0	0	0	1	0	0	0	7801	1116	39	1	2853	1	INADL	1	62330249	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41575	62330249	186920372	453	8604											
INADL	10207	broad.mit.edu	37	chr1	62349918	62349918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcttcaggcatgatccCgaatgatgtccaaggtccta	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62349918	A	A	62349918	3	1	9	1	0	0	0	0	1	0	0	0	7801	652	23	1	3051	1	INADL	1	62349918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19669	62349918	186900703	454	8605											
INADL	10207	broad.mit.edu	37	chr1	62349975	62349975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttgtggctcaaaggaGggagcaagaagatttgcctt	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62349975	T	T	62349975	3	4	9	1	0	0	0	0	1	0	0	0	7801	1000	35	2	3108	2	INADL	1	62349975	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	57	62349975	186900646	455	8606											
INADL	10207	broad.mit.edu	37	chr1	62365247	62365247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtatttttttctttctccCtctgtagtgagttacctgag	8	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62365247	A	A	62365247	1	1	9	0	1	0	0	0	0	0	0	0	7801	696	24	2		2	INADL	1	62365247	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15272	62365247	186885374	456	8607											
INADL	10207	broad.mit.edu	37	chr1	62365320	62365320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagccactggggtccacCgagaatgtatgtggatgaca	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62365320	A	A	62365320	3	1	9	1	0	0	0	0	1	0	0	0	7801	652	23	1	3283	1	INADL	1	62365320	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73	62365320	186885301	457	8608											
INADL	10207	broad.mit.edu	37	chr1	62393501	62393501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagatgcctttaccgacCgtgagtgccttttcactatt	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62393501	A	A	62393501	3	1	9	1	0	0	0	0	1	0	0	0	7801	666	23	1	3772	1	INADL	1	62393501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28181	62393501	186857120	458	8609											
INADL	10207	broad.mit.edu	37	chr1	62455981	62455981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgtggtgggaattaaccCggaaggacctgctgccgcag	14	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62455981	A	A	62455981	3	1	9	1	0	0	0	0	1	0	0	0	7801	652	23	1	3918	1	INADL	1	62455981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62480	62455981	186794640	459	8610											
INADL	10207	broad.mit.edu	37	chr1	62545166	62545166	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatccaacaaaagtctcCttcagttcacaagagatacc	4	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62545166	A	A	62545166	2	1	9	1	0	0	0	0	0	0	0	1	7801	668	24	2		2	INADL	1	62545166	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	89185	62545166	186705455	460	8611											
INADL	10207	broad.mit.edu	37	chr1	62550218	62550218	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctctgtcagtggacccCgcaacgtgtcccattgtccc	9	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62550218	A	A	62550218	2	1	9	1	0	0	0	0	0	0	0	1	7801	639	23	1		1	INADL	1	62550218	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5052	62550218	186700403	461	8612											
INADL	10207	broad.mit.edu	37	chr1	62550317	62550317	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaggaaaagacacaccCttggtaagtttctagaaata	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62550317	A	A	62550317	2	1	9	1	0	0	0	0	0	0	0	1	7801	668	24	2		2	INADL	1	62550317	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	99	62550317	186700304	462	8613											
INADL	10207	broad.mit.edu	37	chr1	62586802	62586802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggataagtatgcatttaGggggtcaagtcagtgtctgc	13	5	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62586802	T	T	62586802	1	4	9	0	1	0	0	0	0	0	0	0	7801	1015	35	2		2	INADL	1	62586802	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36485	62586802	186663819	463	8614											
INADL	10207	broad.mit.edu	37	chr1	62586852	62586852	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctgggtctttctttcaGggtagtcagcagagtgcaca	11	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62586852	T	T	62586852	5	4	9	1	0	0	0	0	0	0	1	0	7801	1014	35	2	5036	2	INADL	1	62586852	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	62586852	186663769	464	8615											
INADL	10207	broad.mit.edu	37	chr1	62586955	62586955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagtttcagatccttccCagaaaaattcaggtattaca	6	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62586955	A	A	62586955	3	1	9	1	0	0	0	0	1	0	0	0	7801	595	21	2	5139	2	INADL	1	62586955	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	62586955	186663666	465	8616											
INADL	10207	broad.mit.edu	37	chr1	62593709	62593709	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccttaggagatatcccCgtatttattgccatgattca	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62593709	A	A	62593709	2	1	9	1	0	0	0	0	0	0	0	1	7801	639	23	1		1	INADL	1	62593709	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6754	62593709	186656912	466	8617											
INADL	10207	broad.mit.edu	37	chr1	62594540	62594540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcggattgtcagcattaacGggcaacctttggatgggctg	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62594540	T	T	62594540	3	4	9	1	0	0	0	0	1	0	0	0	7801	1116	39	1	5352	1	INADL	1	62594540	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	831	62594540	186656081	467	8618											
INADL	10207	broad.mit.edu	37	chr1	62613951	62613951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctttttttcactttttcCccaggttgtagcagatacca	5	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62613951	A	A	62613951	1	1	9	0	1	0	0	0	0	0	0	0	7801	638	22	2		2	INADL	1	62613951	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19411	62613951	186636670	468	8619											
INADL	10207	broad.mit.edu	37	chr1	62614033	62614033	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaccaccttggttcgccCactgctgaacaccatccaga	8	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62614033	A	A	62614033	2	1	9	1	0	0	0	0	0	0	0	1	7801	581	21	2		2	INADL	1	62614033	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	62614033	186636588	469	8620											
INADL	10207	broad.mit.edu	37	chr1	62614065	62614065	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatccagaagacacagagtGagtatttcagatgcagaggg	12	8	1	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62614065	T	T	62614065	1	4	9	0	1	0	0	0	0	0	0	0	7801	1305	45	3		3	INADL	1	62614065	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	62614065	186636556	470	8621											
INADL	10207	broad.mit.edu	37	chr1	62626548	62626548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatataaactgtgttttaccCtggattaaactgaaatgttt	6	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62626548	A	A	62626548	1	1	9	0	1	0	0	0	0	0	0	0	7801	696	24	2		2	INADL	1	62626548	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12483	62626548	186624073	471	8622											
L1TD1	54596	broad.mit.edu	37	chr1	62675464	62675464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaactttcaggataaaaccCtaatagactcaaagcataga	5	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62675464	A	A	62675464	3	1	9	1	0	0	0	0	1	0	0	0	8661	680	24	2	1024	2	L1TD1	1	62675464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48916	62675464	186575157	472	8623											
L1TD1	54596	broad.mit.edu	37	chr1	62675592	62675592	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaagaggaagagttttcCgagctagaggagctggatga	14	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62675592	A	A	62675592	2	1	9	1	0	0	0	0	0	0	0	1	8661	639	23	1		1	L1TD1	1	62675592	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	128	62675592	186575029	473	8624											
L1TD1	54596	broad.mit.edu	37	chr1	62676001	62676001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatttggttggggactctGggaagaaaaagttggtgaaa	15	2	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62676001	T	T	62676001	3	4	9	1	0	0	0	0	1	0	0	0	8661	1348	47	2	1561	2	L1TD1	1	62676001	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	409	62676001	186574620	474	8625											
L1TD1	54596	broad.mit.edu	37	chr1	62676069	62676069	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggaaacagctgtgccCacaagtcaaggaactggcac	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62676069	A	A	62676069	2	1	9	1	0	0	0	0	0	0	0	1	8661	581	21	2		2	L1TD1	1	62676069	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	62676069	186574552	475	8626											
L1TD1	54596	broad.mit.edu	37	chr1	62677131	62677131	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgaaaatacacttctaccCagaaggatggacagctaata	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62677131	A	A	62677131	1	1	9	0	1	0	0	0	0	0	0	0	8661	609	21	2		2	L1TD1	1	62677131	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1062	62677131	186573490	476	8627											
KANK4	163782	broad.mit.edu	37	chr1	62718688	62718688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccactagcagaataaagcGggaggtgcccctgcatttac	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62718688	T	T	62718688	1	4	9	0	1	0	0	0	0	0	0	0	8049	1131	39	1		1	KANK4	1	62718688	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41557	62718688	186531933	477	8628											
KANK4	163782	broad.mit.edu	37	chr1	62718770	62718770	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatgttcacatttccttctCttaagagcttccagacaaca	5	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62718770	A	A	62718770	3	1	9	1	0	0	0	0	1	0	0	0	8049	913	32	3	348	3	KANK4	1	62718770	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	62718770	186531851	478	8629											
KANK4	163782	broad.mit.edu	37	chr1	62718838	62718838	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaagggagtgatcattacGgcagtgtagccagctttgtt	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62718838	T	T	62718838	2	4	9	1	0	0	0	0	0	0	0	1	8049	1103	39	1		1	KANK4	1	62718838	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68	62718838	186531783	479	8630											
KANK4	163782	broad.mit.edu	37	chr1	62732456	62732456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatgctggctcagtgccCggcatgcattaagaaattct	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62732456	A	A	62732456	3	1	9	1	0	0	0	0	1	0	0	0	8049	652	23	1	740	1	KANK4	1	62732456	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13618	62732456	186518165	480	8631											
KANK4	163782	broad.mit.edu	37	chr1	62734130	62734130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtcagacaagtcctctGgggtgctgtcctcaccgctg	12	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62734130	T	T	62734130	3	4	9	1	0	0	0	0	1	0	0	0	8049	1348	47	2	951	2	KANK4	1	62734130	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1674	62734130	186516491	481	8632											
KANK4	163782	broad.mit.edu	37	chr1	62734158	62734158	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcctcaccgctggtctcctCacttgaggtggtctcatacc	9	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62734158	A	A	62734158	4	1	9	1	0	0	0	0	0	1	0	0	8049	835	29	3	979	3	KANK4	1	62734158	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	62734158	186516463	482	8633											
KANK4	163782	broad.mit.edu	37	chr1	62737141	62737141	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagtctgagcttcacaagcGatgcttacccaccgttaacc	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62737141	T	T	62737141	1	4	9	0	1	0	0	0	0	0	0	0	8049	1073	37	3		3	KANK4	1	62737141	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2983	62737141	186513480	483	8634											
KANK4	163782	broad.mit.edu	37	chr1	62737154	62737154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagcgatgcttacccacCgttaaccccaacaaactgaa	5	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62737154	A	A	62737154	3	1	9	1	0	0	0	0	1	0	0	0	8049	652	23	1	1007	1	KANK4	1	62737154	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	62737154	186513467	484	8635											
KANK4	163782	broad.mit.edu	37	chr1	62737190	62737190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaggttctttttggtccCattacctcctgcacggaagc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62737190	A	A	62737190	3	1	9	1	0	0	0	0	1	0	0	0	8049	594	21	2	1043	2	KANK4	1	62737190	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	62737190	186513431	485	8636											
KANK4	163782	broad.mit.edu	37	chr1	62737205	62737205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccattacctcctgcacGgaagccatagtctttctttt	7	13	2	0	rs139344628	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62737205	T	T	62737205	3	4	9	1	0	0	0	0	1	0	0	0	8049	1116	39	1	1058	1	KANK4	1	62737205	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	62737205	186513416	486	8637											
KANK4	163782	broad.mit.edu	37	chr1	62737252	62737252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatttaaggctggtcgatGgggagatctctaggcagaca	15	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62737252	T	T	62737252	3	4	9	1	0	0	0	0	1	0	0	0	8049	1348	47	2	1105	2	KANK4	1	62737252	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47	62737252	186513369	487	8638											
KANK4	163782	broad.mit.edu	37	chr1	62739028	62739028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggcgctggccagctccGggtacccatgctccaggcag	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739028	T	T	62739028	3	4	9	1	0	0	0	0	1	0	0	0	8049	1116	39	1	1271	1	KANK4	1	62739028	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1776	62739028	186511593	488	8639											
KANK4	163782	broad.mit.edu	37	chr1	62739327	62739327	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggtaaggacctgctcGggtccctgtggcagtgacag	17	9	0	1	rs111315510		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739327	T	T	62739327	2	4	9	1	0	0	0	0	0	0	0	1	8049	1103	39	1		1	KANK4	1	62739327	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	299	62739327	186511294	489	8640											
KANK4	163782	broad.mit.edu	37	chr1	62739373	62739373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagcacacgttctgctGggctctgattcccttgttta	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739373	T	T	62739373	3	4	9	1	0	0	0	0	1	0	0	0	8049	1348	47	2	1616	2	KANK4	1	62739373	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46	62739373	186511248	490	8641											
KANK4	163782	broad.mit.edu	37	chr1	62739546	62739546	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgttcaccatcacgtcCgtctggccctgagtgtcttt	9	13	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62739546	A	A	62739546	2	1	9	1	0	0	0	0	0	0	0	1	8049	639	23	1		1	KANK4	1	62739546	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	173	62739546	186511075	491	8642											
KANK4	163782	broad.mit.edu	37	chr1	62739622	62739622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctacagtgaactccagctctCgaattctttgctccctagct	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62739622	A	A	62739622	3	1	9	1	0	0	0	0	1	0	0	0	8049	884	31	3	1865	3	KANK4	1	62739622	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	62739622	186510999	492	8643											
KANK4	163782	broad.mit.edu	37	chr1	62740565	62740565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggaaggctgaagtttcGgggcagagtgctaaatttgg	16	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62740565	T	T	62740565	2	4	9	1	0	0	0	0	0	0	0	1	8049	1124	39	1		1	KANK4	1	62740565	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	943	62740565	186510056	493	8644											
KANK4	163782	broad.mit.edu	37	chr1	62740597	62740597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatttggcctgcttggccCttctgtggataggaattctt	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62740597	A	A	62740597	3	1	9	1	0	0	0	0	1	0	0	0	8049	681	24	2	2840	2	KANK4	1	62740597	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	62740597	186510024	494	8645											
KANK4	163782	broad.mit.edu	37	chr1	62740632	62740632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttttgatagtgtttccCttctcgatgtcatccacata	5	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62740632	A	A	62740632	3	1	9	1	0	0	0	0	1	0	0	0	8049	680	24	2	2875	2	KANK4	1	62740632	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	62740632	186509989	495	8646											
KANK4	163782	broad.mit.edu	37	chr1	62740717	62740717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaataagggtggctcttcGgagggtctttctcttcatcc	11	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62740717	T	T	62740717	3	4	9	1	0	0	0	0	1	0	0	0	8049	1116	39	1	2960	1	KANK4	1	62740717	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85	62740717	186509904	496	8647											
KANK4	163782	broad.mit.edu	37	chr1	62740738	62740738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggtctttctcttcatccCcctgagaggactggtctttg	11	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62740738	A	A	62740738	3	1	9	1	0	0	0	0	1	0	0	0	8049	623	22	2	2981	2	KANK4	1	62740738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	62740738	186509883	497	8648											
KANK4	163782	broad.mit.edu	37	chr1	62747172	62747172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggcaacaattctttccCagcccaagtgcttatcttaa	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62747172	A	A	62747172	1	1	9	0	1	0	0	0	0	0	0	0	8049	609	21	2		2	KANK4	1	62747172	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6434	62747172	186503449	498	8649											
KANK4	163782	broad.mit.edu	37	chr1	62747253	62747253	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctttggagcgctgaccCtcagtgtctcaggcactctt	9	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62747253	A	A	62747253	1	1	9	1	0	0	0	0	0	0	0	0	8049	696	24	2		2	KANK4	1	62747253	Translation_Start_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	62747253	186503368	499	8650											
USP1	7398	broad.mit.edu	37	chr1	62905588	62905588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactttcaagaggtagccCttcaaagaaaaacagacttt	8	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62905588	A	A	62905588	3	1	9	1	0	0	0	0	1	0	0	0	17166	681	24	2	52	2	USP1	1	62905588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158335	62905588	186345033	500	8651											
USP1	7398	broad.mit.edu	37	chr1	62910540	62910540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaatgtggcagaattacCtactaaggtagaagaaatac	8	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62910540	A	A	62910540	3	1	9	1	0	0	0	0	1	0	0	0	17166	681	24	2	707	2	USP1	1	62910540	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4952	62910540	186340081	501	8652											
USP1	7398	broad.mit.edu	37	chr1	62910567	62910567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaagaaatacctcatcCgaaagaggaaatgaatggta	11	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62910567	A	A	62910567	3	1	9	1	0	0	0	0	1	0	0	0	17166	652	23	1	734	1	USP1	1	62910567	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	62910567	186340054	502	8653											
USP1	7398	broad.mit.edu	37	chr1	62910808	62910808	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcctcctaaaataattccCaagtatatttctgaaaatga	4	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62910808	A	A	62910808	2	1	9	1	0	0	0	0	0	0	0	1	17166	581	21	2		2	USP1	1	62910808	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	241	62910808	186339813	503	8654											
USP1	7398	broad.mit.edu	37	chr1	62915994	62915994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaattgtcactagaagaatGgagcacaaagccaactaacg	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62915994	T	T	62915994	3	4	9	1	0	0	0	0	1	0	0	0	17166	1357	47	2	1730	2	USP1	1	62915994	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5186	62915994	186334627	504	8655											
DOCK7	85440	broad.mit.edu	37	chr1	62923248	62923248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactgccttgtataactgaGggatctttctgttgatcagt	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62923248	T	T	62923248	3	4	9	1	0	0	0	0	1	0	0	0	4732	1000	35	2	89	2	DOCK7	1	62923248	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7254	62923248	186327373	505	8656											
DOCK7	85440	broad.mit.edu	37	chr1	62923389	62923389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacacctaggaaaaacaGgatgttatcaagatattact	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62923389	T	T	62923389	1	4	9	0	1	0	0	0	0	0	0	0	4732	1015	35	2		2	DOCK7	1	62923389	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	141	62923389	186327232	506	8657											
DOCK7	85440	broad.mit.edu	37	chr1	62939602	62939602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccttatgtcatactgtGgtattggacagtctcaattt	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62939602	T	T	62939602	1	4	9	0	1	0	0	0	0	0	0	0	4732	1363	47	2		2	DOCK7	1	62939602	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16213	62939602	186311019	507	8658											
DOCK7	85440	broad.mit.edu	37	chr1	62939710	62939710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgatgtctgaagagctttGggtcactaggtatttcagac	11	6	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62939710	T	T	62939710	3	4	9	1	0	0	0	0	1	0	0	0	4732	1348	47	2	279	2	DOCK7	1	62939710	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108	62939710	186310911	508	8659											
DOCK7	85440	broad.mit.edu	37	chr1	62939759	62939759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcaacttccaaaggccCctgcaaaataagaaaataag	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62939759	A	A	62939759	3	1	9	1	0	0	0	0	1	0	0	0	4732	637	22	2	328	2	DOCK7	1	62939759	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	62939759	186310862	509	8660											
DOCK7	85440	broad.mit.edu	37	chr1	62940939	62940939	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcattttggggtctgcGggatcctgatgtgttgcaaa	14	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62940939	T	T	62940939	2	4	9	1	0	0	0	0	0	0	0	1	4732	1103	39	1		1	DOCK7	1	62940939	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1180	62940939	186309682	510	8661											
DOCK7	85440	broad.mit.edu	37	chr1	62941284	62941284	+	Intron	SNP	G	T	T													tctaatatgttatggtataaGggatggtacatatcttctgg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62941284	T	T	62941284	1	4	9	0	1	0	0	0	0	0	0	0	4732	1015	35	2		2	DOCK7	1	62941284	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	345	62941284	186309337	511	8662	30	2									
DOCK7	85440	broad.mit.edu	37	chr1	62941289	62941289	+	Intron	SNP	G	T	T													tatgttatggtataagggatGgtacatatcttctggtacat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62941289	T	T	62941289	1	4	9	0	1	0	0	0	0	0	0	0	4732	1363	47	2		2	DOCK7	1	62941289	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5	62941289	186309332	512	8663	30	2									
DOCK7	85440	broad.mit.edu	37	chr1	62941312	62941312	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatatcttctggtacatctGagttgttgttacatggcttg	9	7	3	1	rs138064438	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62941312	T	T	62941312	1	4	9	0	1	0	0	0	0	0	0	0	4732	1305	45	3		3	DOCK7	1	62941312	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	62941312	186309309	513	8664											
DOCK7	85440	broad.mit.edu	37	chr1	62941403	62941403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttatgagtgacattgaccCttgttttaatataaggaaag	8	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62941403	A	A	62941403	3	1	9	1	0	0	0	0	1	0	0	0	4732	681	24	2	506	2	DOCK7	1	62941403	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	91	62941403	186309218	514	8665											
DOCK7	85440	broad.mit.edu	37	chr1	62941501	62941501	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacggccatctaaagtaaaGggtgtacagtacatgaatcg	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62941501	T	T	62941501	2	4	9	1	0	0	0	0	0	0	0	1	4732	987	35	2		2	DOCK7	1	62941501	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	98	62941501	186309120	515	8666											
DOCK7	85440	broad.mit.edu	37	chr1	62941633	62941633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctaggaaagaaaaaagtcCttcatttcctcactgttaag	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62941633	A	A	62941633	1	1	9	0	1	0	0	0	0	0	0	0	4732	696	24	2		2	DOCK7	1	62941633	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	132	62941633	186308988	516	8667											
DOCK7	85440	broad.mit.edu	37	chr1	62941806	62941806	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcaaccacatcctctcCaaatctttctccgtaaaatc	1	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62941806	A	A	62941806	4	1	9	1	0	0	0	0	0	1	0	0	4732	603	21	2	790	2	DOCK7	1	62941806	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	173	62941806	186308815	517	8668											
DOCK7	85440	broad.mit.edu	37	chr1	62941818	62941818	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctctccaaatctttctcCgtaaaatccctacaataaag	2	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62941818	A	A	62941818	4	1	9	1	0	0	0	0	0	1	0	0	4732	661	23	1	802	1	DOCK7	1	62941818	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	62941818	186308803	518	8669											
DOCK7	85440	broad.mit.edu	37	chr1	62943253	62943253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtccttattctctaacGgagtagtttacttggcaaga	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62943253	T	T	62943253	1	4	9	0	1	0	0	0	0	0	0	0	4732	1131	39	1		1	DOCK7	1	62943253	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1435	62943253	186307368	519	8670											
DOCK7	85440	broad.mit.edu	37	chr1	62943374	62943374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccacagcattcacctcCaatctgtgagatatctctgc	5	15	3	1	rs147582756		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62943374	A	A	62943374	3	1	9	1	0	0	0	0	1	0	0	0	4732	593	21	2	819	2	DOCK7	1	62943374	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	121	62943374	186307247	520	8671											
DOCK7	85440	broad.mit.edu	37	chr1	62943448	62943448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgttcatccaaatcccCgaacttggttccataaaaac	4	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62943448	A	A	62943448	3	1	9	1	0	0	0	0	1	0	0	0	4732	652	23	1	893	1	DOCK7	1	62943448	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74	62943448	186307173	521	8672											
DOCK7	85440	broad.mit.edu	37	chr1	62943495	62943495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaataggtgccaaacatcCgcttaccatcctaggtttag	8	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62943495	A	A	62943495	3	1	9	1	0	0	0	0	1	0	0	0	4732	666	23	1	940	1	DOCK7	1	62943495	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	62943495	186307126	522	8673											
DOCK7	85440	broad.mit.edu	37	chr1	62952938	62952938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttaacaaaatttctttGgttaatgaattcagttgata	5	3	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62952938	T	T	62952938	1	4	9	0	1	0	0	0	0	0	0	0	4732	1363	47	2		2	DOCK7	1	62952938	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9443	62952938	186297683	523	8674											
DOCK7	85440	broad.mit.edu	37	chr1	62952995	62952995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccacagctagcacatgtGggcaaagcattggcataaga	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62952995	T	T	62952995	1	4	9	0	1	0	0	0	0	0	0	0	4732	1363	47	2		2	DOCK7	1	62952995	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57	62952995	186297626	524	8675											
DOCK7	85440	broad.mit.edu	37	chr1	62953156	62953156	+	Intron	SNP	C	A	A													acaaaaaaggccaaaggcacCatataccataaattcttctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62953156	A	A	62953156	1	1	9	0	1	0	0	0	0	0	0	0	4732	609	21	2		2	DOCK7	1	62953156	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	161	62953156	186297465	525	8676	31	2									
DOCK7	85440	broad.mit.edu	37	chr1	62953163	62953163	+	Intron	SNP	C	A	A													aggccaaaggcaccatatacCataaattcttctccacaaac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62953163	A	A	62953163	1	1	9	0	1	0	0	0	0	0	0	0	4732	609	21	2		2	DOCK7	1	62953163	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	62953163	186297458	526	8677	31	2									
DOCK7	85440	broad.mit.edu	37	chr1	62954515	62954515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattaaaatggtcatttcacGggatctagtttgacatcagt	9	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62954515	T	T	62954515	1	4	9	0	1	0	0	0	0	0	0	0	4732	1131	39	1		1	DOCK7	1	62954515	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1352	62954515	186296106	527	8678											
DOCK7	85440	broad.mit.edu	37	chr1	62954672	62954672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatagtttctttgcatccCgattagcttcatgaatagga	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62954672	A	A	62954672	3	1	9	1	0	0	0	0	1	0	0	0	4732	652	23	1	1032	1	DOCK7	1	62954672	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	157	62954672	186295949	528	8679											
DOCK7	85440	broad.mit.edu	37	chr1	62958347	62958347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattagaggtatgaaactgtGggaaaagaattaacaagagt	11	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62958347	T	T	62958347	1	4	9	0	1	0	0	0	0	0	0	0	4732	1363	47	2		2	DOCK7	1	62958347	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3675	62958347	186292274	529	8680											
DOCK7	85440	broad.mit.edu	37	chr1	62958411	62958411	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcttgttccagtaatccCacaagtcctgactcagtaaa	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62958411	A	A	62958411	2	1	9	1	0	0	0	0	0	0	0	1	4732	581	21	2		2	DOCK7	1	62958411	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	62958411	186292210	530	8681											
DOCK7	85440	broad.mit.edu	37	chr1	62958463	62958463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagataccttcttcatctGgagataccacatcatctgag	7	11	5	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62958463	T	T	62958463	3	4	9	1	0	0	0	0	1	0	0	0	4732	1348	47	2	1189	2	DOCK7	1	62958463	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	62958463	186292158	531	8682											
DOCK7	85440	broad.mit.edu	37	chr1	62958486	62958486	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataccacatcatctgagacCgcagattcttctaaaacatt	5	11	4	2	rs146098559	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62958486	A	A	62958486	2	1	9	1	0	0	0	0	0	0	0	1	4732	639	23	1		1	DOCK7	1	62958486	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	62958486	186292135	532	8683											
DOCK7	85440	broad.mit.edu	37	chr1	62960129	62960129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggagaggtctggtaaccCttggcaattctaattagaac	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62960129	A	A	62960129	3	1	9	1	0	0	0	0	1	0	0	0	4732	680	24	2	1432	2	DOCK7	1	62960129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1643	62960129	186290492	533	8684											
DOCK7	85440	broad.mit.edu	37	chr1	62960180	62960180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccattagtatgtgcttccCaagctgggagggagtttaga	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62960180	A	A	62960180	1	1	9	0	1	0	0	0	0	0	0	0	4732	609	21	2		2	DOCK7	1	62960180	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	62960180	186290441	534	8685											
DOCK7	85440	broad.mit.edu	37	chr1	62962017	62962017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatttctgacctgatcaGgaaatgttgtttccctcaat	7	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62962017	T	T	62962017	3	4	9	1	0	0	0	0	1	0	0	0	4732	1000	35	2	1558	2	DOCK7	1	62962017	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1837	62962017	186288604	535	8686											
DOCK7	85440	broad.mit.edu	37	chr1	62970359	62970359	+	Missense_Mutation	SNP	C	A	A													gggaggcactggcgtgtgacCgtattgtaccgatgctactg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62970359	A	A	62970359	3	1	9	1	0	0	0	0	1	0	0	0	4732	652	23	1	1772	1	DOCK7	1	62970359	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8342	62970359	186280262	536	8687	32	2									
DOCK7	85440	broad.mit.edu	37	chr1	62970369	62970369	+	Missense_Mutation	SNP	C	A	A													ggcgtgtgaccgtattgtacCgatgctactgctacagtgtc					rs147103646	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62970369	A	A	62970369	3	1	9	1	0	0	0	0	1	0	0	0	4732	652	23	1	1782	1	DOCK7	1	62970369	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	62970369	186280252	537	8688	32	2									
DOCK7	85440	broad.mit.edu	37	chr1	62970390	62970390	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctactgctacagtgtcGgagaagcctgaggcataaat	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62970390	T	T	62970390	2	4	9	1	0	0	0	0	0	0	0	1	4732	1124	39	1		1	DOCK7	1	62970390	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	62970390	186280231	538	8689											
DOCK7	85440	broad.mit.edu	37	chr1	63008322	63008322	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgttgcaaagctgattccCgaacgctgccactgcaaaca	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63008322	G	G	63008322	3	3	9	1	0	0	0	0	1	0	0	0	4732	652	23	4	3524	4	DOCK7	1	63008322	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37932	63008322	186242299	539	8690											
PGM1	5236	broad.mit.edu	37	chr1	64095713	64095713	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtagaccttggtgttctGggaaagcagcagtttgactt	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64095713	T	T	64095713	2	4	9	1	0	0	0	0	0	0	0	1	11892	1335	47	2		2	PGM1	1	64095713	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1087391	64095713	185154908	540	8691											
PGM1	5236	broad.mit.edu	37	chr1	64102029	64102029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtccgcggctttgcacGgagcatgcccacgagtggtg	17	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64102029	T	T	64102029	3	4	9	1	0	0	0	0	1	0	0	0	11892	1116	39	1	1324	1	PGM1	1	64102029	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6316	64102029	185148592	541	8692											
ROR1	4919	broad.mit.edu	37	chr1	64516433	64516433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttctaagtgtttctcCgtggttttctagggcaaaag	10	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64516433	A	A	64516433	1	1	9	0	1	0	0	0	0	0	0	0	13637	667	23	1		1	ROR1	1	64516433	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	414404	64516433	184734188	542	8693											
CACHD1	57685	broad.mit.edu	37	chr1	65129510	65129510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccgcctcattgctaaccCgggcctcaaagtaagcattg	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65129510	A	A	65129510	3	1	9	1	0	0	0	0	1	0	0	0	2563	652	23	1	1985	1	CACHD1	1	65129510	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	613077	65129510	184121111	543	8694											
JAK1	3716	broad.mit.edu	37	chr1	65307212	65307212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcatagttcatgcagcGggtcatgaggtcagccagct	15	9	4	1	rs150021823	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65307212	T	T	65307212	3	4	9	1	0	0	0	0	1	0	0	0	8007	1116	39	1	1020	1	JAK1	1	65307212	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	177702	65307212	183943409	544	8695											
DNAJC6	9829	broad.mit.edu	37	chr1	65845180	65845180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggctactgcagaatccCaaaaatgtctgtgttgtcca	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65845180	A	A	65845180	2	1	9	1	0	0	0	0	0	0	0	1	4693	581	21	2		2	DNAJC6	1	65845180	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	537968	65845180	183405441	545	8696											
SGIP1	84251	broad.mit.edu	37	chr1	67155814	67155814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagacattaaaaatatGgagcaaaaatactgcaacct	8	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67155814	T	T	67155814	1	4	9	0	1	0	0	0	0	0	0	0	14319	1363	47	2		2	SGIP1	1	67155814	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1310634	67155814	182094807	546	8697											
SGIP1	84251	broad.mit.edu	37	chr1	67155934	67155934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatagcacccttagcgcGggctgaaagcacttcttcaa	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67155934	T	T	67155934	3	4	9	1	0	0	0	0	1	0	0	0	14319	1116	39	1	1571	1	SGIP1	1	67155934	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	120	67155934	182094687	547	8698											
IL12RB2	3595	broad.mit.edu	37	chr1	67852300	67852300	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtttgtggcaccaagcattTgcattgctatcatcatggtg	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67852300	A	A	67852300	3	1	9	1	0	0	0	0	1	0	0	0	7697	1812	63	5	1944	5	IL12RB2	1	67852300	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	696366	67852300	181398321	548	8699											
SERBP1	26135	broad.mit.edu	37	chr1	67895690	67895690	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctttcttaagcgccacGggcggctgcgtctcctcttt	9	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67895690	T	T	67895690	2	4	9	1	0	0	0	0	0	0	0	1	14188	1103	39	1		1	SERBP1	1	67895690	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43390	67895690	181354931	549	8700											
RPE65	6121	broad.mit.edu	37	chr1	68910211	68910211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacctagcactgtgtccCacctgcttaattgtctccaa	5	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68910211	A	A	68910211	1	1	9	0	1	0	0	0	0	0	0	0	13656	609	21	2		2	RPE65	1	68910211	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1014521	68910211	180340410	550	8701											
LRRC7	57554	broad.mit.edu	37	chr1	70339303	70339303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtagaggtagttctccCaaactatattatgaaaccaa	6	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70339303	A	A	70339303	1	1	9	0	1	0	0	0	0	0	0	0	9107	609	21	2		2	LRRC7	1	70339303	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1429092	70339303	178911318	551	8702											
SFRS11	9295	broad.mit.edu	37	chr1	70687376	70687376	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggccccagcggcgggccCggtggcggaggtggtggtgg	23	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70687376	A	A	70687376	2	1	9	1	0	0	0	0	0	0	0	1	14279	639	23	1		1	SFRS11	1	70687376	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	348073	70687376	178563245	552	8703											
SFRS11	9295	broad.mit.edu	37	chr1	70700478	70700478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgaactctcaggtatacCttagtaacttcaaatttttc	4	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70700478	A	A	70700478	1	1	9	0	1	0	0	0	0	0	0	0	14279	696	24	2		2	SFRS11	1	70700478	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13102	70700478	178550143	553	8704											
ANKRD13C	81573	broad.mit.edu	37	chr1	70761826	70761826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatactgttttatcttccCgaaaaagccatcctgtctgg	6	12	2	0	rs34940869		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70761826	A	A	70761826	3	1	9	1	0	0	0	0	1	0	0	0	643	652	23	1	609	1	ANKRD13C	1	70761826	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61348	70761826	178488795	554	8705											
PTGER3	5733	broad.mit.edu	37	chr1	71437403	71437403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaataaaatgtccaactcCgttctttcattatctgttag	5	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71437403	A	A	71437403	1	1	9	0	1	0	0	0	0	0	0	0	12850	667	23	1		1	PTGER3	1	71437403	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	675577	71437403	177813218	555	8706											
ZRANB2	9406	broad.mit.edu	37	chr1	71532432	71532432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacacacttaagaacaccCattcttatttctacagaaac	2	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71532432	A	A	71532432	1	1	9	0	1	0	0	0	0	0	0	0	18352	609	21	2		2	ZRANB2	1	71532432	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	95029	71532432	177718189	556	8707											
ZRANB2	9406	broad.mit.edu	37	chr1	71546648	71546648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagggcaaatccagtcccCgtcactgactcggaaattct	9	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71546648	A	A	71546648	3	1	9	1	0	0	0	0	1	0	0	0	18352	652	23	1	1039	1	ZRANB2	1	71546648	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14216	71546648	177703973	557	8708											
LRRIQ3	127255	broad.mit.edu	37	chr1	74648380	74648380	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagaacatgtctatatcCttttttaaggcttactggac	6	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74648380	A	A	74648380	4	1	9	1	0	0	0	0	0	1	0	0	9117	690	24	2	1483	2	LRRIQ3	1	74648380	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3101732	74648380	174602241	558	8709											
FPGT	8790	broad.mit.edu	37	chr1	74671075	74671075	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaacaaaagctgccctcccCgcacattcttttgtatgttc	5	14	1	0	rs145079613		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74671075	A	A	74671075	2	1	9	1	0	0	0	0	0	0	0	1	6097	639	23	1		1	FPGT	1	74671075	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22695	74671075	174579546	559	8710											
TNNI3K	51086	broad.mit.edu	37	chr1	74737345	74737345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatacagcaggttggatacGgtggcctcactgccctccat	10	12	1	0	rs145498815	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74737345	T	T	74737345	3	4	9	1	0	0	0	0	1	0	0	0	16452	1116	39	1	770	1	TNNI3K	1	74737345	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66270	74737345	174513276	560	8711											
C1orf173	127254	broad.mit.edu	37	chr1	75055426	75055426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcagaaacatgtttccCggacttctcagataaaccct	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75055426	A	A	75055426	3	1	9	1	0	0	0	0	1	0	0	0	2034	652	23	1	2539	1	C1orf173	1	75055426	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	318081	75055426	174195195	561	8712											
C1orf173	127254	broad.mit.edu	37	chr1	75065525	75065525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcatccaaaggtgactgcGgtattccattcatttgaaca	7	9	2	2	rs137958677	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75065525	T	T	75065525	3	4	9	1	0	0	0	0	1	0	0	0	2034	1116	39	1	3028	1	C1orf173	1	75065525	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10099	75065525	174185096	562	8713											
C1orf173	127254	broad.mit.edu	37	chr1	75102103	75102103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatatttcctggagcaGtatatggtcgaggggctgtc	14	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75102103	T	T	75102103	3	4	9	1	0	0	0	0	1	0	0	0	2034	1029	36	3	4164	3	C1orf173	1	75102103	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36578	75102103	174148518	563	8714											
C1orf173	127254	broad.mit.edu	37	chr1	75102193	75102193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagaaccaattaataaccCaataaattgcctagagtaat	4	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75102193	A	A	75102193	1	1	9	0	1	0	0	0	0	0	0	0	2034	609	21	2		2	C1orf173	1	75102193	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	75102193	174148428	564	8715											
TYW3	127253	broad.mit.edu	37	chr1	75229635	75229635	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgatgactaacttacatccCaagatcaaagagaaaaataa	5	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75229635	A	A	75229635	2	1	9	1	0	0	0	0	0	0	0	1	16946	581	21	2		2	TYW3	1	75229635	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	127442	75229635	174020986	565	8716											
SLC44A5	204962	broad.mit.edu	37	chr1	75684360	75684360	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagggatgtactgatggtaCaagctctttccaccatagaa	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75684360	T	T	75684360	2	4	9	1	0	0	0	0	0	0	0	1	14753	477	17	4		4	SLC44A5	1	75684360	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	454725	75684360	173566261	566	8717											
SLC44A5	204962	broad.mit.edu	37	chr1	75708606	75708606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtcttacagaactgacGgtagtcttcccagtagcttt	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75708606	T	T	75708606	3	4	9	1	0	0	0	0	1	0	0	0	14753	1116	39	1	1902	1	SLC44A5	1	75708606	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24246	75708606	173542015	567	8718											
SLC44A5	204962	broad.mit.edu	37	chr1	75805249	75805249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaaaaaagcatattcccCaaaaaataattgcttacctg	4	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75805249	A	A	75805249	1	1	9	0	1	0	0	0	0	0	0	0	14753	609	21	2		2	SLC44A5	1	75805249	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96643	75805249	173445372	568	8719											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77093219	77093219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatggcattcacgtctacGggatgataaatgacacctac	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77093219	T	T	77093219	3	4	9	1	0	0	0	0	1	0	0	0	15343	1116	39	1	734	1	ST6GALNAC3	1	77093219	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1287970	77093219	172157402	569	8720											
AK5	26289	broad.mit.edu	37	chr1	77752679	77752679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatccagtagaatacttGgaaagttgtttacaaaaagt	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77752679	T	T	77752679	3	4	9	1	0	0	0	0	1	0	0	0	443	1339	47	2	120	2	AK5	1	77752679	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	659460	77752679	171497942	570	8721											
ZZZ3	26009	broad.mit.edu	37	chr1	78098305	78098305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattgaagtttgggtatcCgtatccccattttcagctac	7	10	1	1	rs146593009	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78098305	A	A	78098305	2	1	9	1	0	0	0	0	0	0	0	1	18385	639	23	1		1	ZZZ3	1	78098305	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	345626	78098305	171152316	571	8722											
FAM73A	374986	broad.mit.edu	37	chr1	78332046	78332046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcttcaagttgttggtcGgtgctgaaacagaaaagaca	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78332046	T	T	78332046	2	4	9	1	0	0	0	0	0	0	0	1	5668	1103	39	1		1	FAM73A	1	78332046	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	233741	78332046	170918575	572	8723											
NEXN	91624	broad.mit.edu	37	chr1	78383891	78383891	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacggaggaggaacgaaaacGcagaattgagcaggatatgt	14	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78383891	A	A	78383891	3	1	9	1	0	0	0	0	1	0	0	0	10450	1087	38	4	394	4	NEXN	1	78383891	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51845	78383891	170866730	573	8724											
NEXN	91624	broad.mit.edu	37	chr1	78383979	78383979	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatcactgaagattaagttCgtatttgtttctgaaactaa	7	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78383979	A	A	78383979	1	1	9	0	1	0	0	0	0	0	0	0	10450	899	31	3		3	NEXN	1	78383979	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	78383979	170866642	574	8725											
IFI44L	10964	broad.mit.edu	37	chr1	79094070	79094070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggaatgtgaagtttttcGagttgaaggtttgtaaaatt	11	1	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79094070	T	T	79094070	3	4	9	1	0	0	0	0	1	0	0	0	7588	1058	37	3	472	3	IFI44L	1	79094070	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	710091	79094070	170156551	575	8726											
IFI44L	10964	broad.mit.edu	37	chr1	79107250	79107250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcactgaggcagatgctgcGggctgcagatgattttttag	14	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79107250	T	T	79107250	3	4	9	1	0	0	0	0	1	0	0	0	7588	1116	39	1	1306	1	IFI44L	1	79107250	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13180	79107250	170143371	576	8727											
ELTD1	64123	broad.mit.edu	37	chr1	79404935	79404935	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctaaatggcagtttgcatTcacattttctgtaaaaaaag	6	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79404935	C	C	79404935	3	2	9	1	0	0	0	0	1	0	0	0	5126	1783	62	5	1786	5	ELTD1	1	79404935	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	297685	79404935	169845686	577	8728											
LPHN2	23266	broad.mit.edu	37	chr1	82402446	82402446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgtatagtagttactGggtcagatgtgtttcctgat	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82402446	T	T	82402446	3	4	9	1	0	0	0	0	1	0	0	0	9003	1348	47	2	332	2	LPHN2	1	82402446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2997511	82402446	166848175	578	8729											
LPHN2	23266	broad.mit.edu	37	chr1	82446537	82446537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctgggtaaggtagaaccCtacattaacaaatttatggc	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82446537	A	A	82446537	1	1	9	0	1	0	0	0	0	0	0	0	9003	696	24	2		2	LPHN2	1	82446537	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44091	82446537	166804084	579	8730											
SAMD13	148418	broad.mit.edu	37	chr1	84791387	84791387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgtcgtcaattatttcCgaaccgtgggatttgaggag	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84791387	A	A	84791387	2	1	9	1	0	0	0	0	0	0	0	1	13929	644	23	1		1	SAMD13	1	84791387	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2344850	84791387	164459234	580	8731											
SSX2IP	117178	broad.mit.edu	37	chr1	85124125	85124125	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctgcttagttccccGgcatcttcttcaacatcgga	6	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85124125	A	A	85124125	2	1	9	1	0	0	0	0	0	0	0	1	15322	1103	39	4		4	SSX2IP	1	85124125	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	332738	85124125	164126496	581	8732											
SSX2IP	117178	broad.mit.edu	37	chr1	85128190	85128190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttttccatcagctctccCgacataattcaaaatgtcca	3	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85128190	A	A	85128190	3	1	9	1	0	0	0	0	1	0	0	0	15322	652	23	1	1179	1	SSX2IP	1	85128190	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4065	85128190	164122431	582	8733											
SSX2IP	117178	broad.mit.edu	37	chr1	85135458	85135458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagctagaaggttcttcCgctgaagcacaagcagctca	10	12	2	3	rs143554238		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85135458	A	A	85135458	3	1	9	1	0	0	0	0	1	0	0	0	15322	652	23	1	1556	1	SSX2IP	1	85135458	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7268	85135458	164115163	583	8734											
LPAR3	23566	broad.mit.edu	37	chr1	85331400	85331400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaggttgctatggaccCgcatcctcatgattgacatg	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85331400	A	A	85331400	3	1	9	1	0	0	0	0	1	0	0	0	8993	652	23	1	665	1	LPAR3	1	85331400	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	195942	85331400	163919221	584	8735											
LPAR3	23566	broad.mit.edu	37	chr1	85331695	85331695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaggcagaaaaacgtccCaacacacaaaacaatcacaa	4	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85331695	A	A	85331695	3	1	9	1	0	0	0	0	1	0	0	0	8993	594	21	2	960	2	LPAR3	1	85331695	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	295	85331695	163918926	585	8736											
MCOLN2	255231	broad.mit.edu	37	chr1	85403685	85403685	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatatgcctggaaataaccCaggtatctgatgactccaac	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85403685	A	A	85403685	2	1	9	1	0	0	0	0	0	0	0	1	9489	581	21	2		2	MCOLN2	1	85403685	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71990	85403685	163846936	586	8737											
MCOLN3	55283	broad.mit.edu	37	chr1	85486994	85486994	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaagttcactttattcCatgttccttcccattggaga	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85486994	G	G	85486994	1	3	9	0	1	0	0	0	0	0	0	0	9490	609	21	4		4	MCOLN3	1	85486994	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	83309	85486994	163763627	587	8738											
WDR63	126820	broad.mit.edu	37	chr1	85559270	85559270	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagtaccagtcctttacCgaccttcatagcccaacgga	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85559270	A	A	85559270	2	1	9	1	0	0	0	0	0	0	0	1	17441	639	23	1		1	WDR63	1	85559270	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72276	85559270	163691351	588	8739											
WDR63	126820	broad.mit.edu	37	chr1	85595854	85595854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccagtggaaatatatttGtttggcttaatccacagttt	7	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85595854	T	T	85595854	1	4	9	0	1	0	0	0	0	0	0	0	17441	1392	48	3		3	WDR63	1	85595854	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36584	85595854	163654767	589	8740											
DDAH1	23576	broad.mit.edu	37	chr1	85787216	85787216	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagttcagacatgctcacGgggatcagcatatggtcctt	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85787216	T	T	85787216	2	4	9	1	0	0	0	0	0	0	0	1	4354	1103	39	1		1	DDAH1	1	85787216	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	191362	85787216	163463405	590	8741											
COL24A1	255631	broad.mit.edu	37	chr1	86241324	86241324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttatagcctagtgtcagGgttactataatcacaaattt	7	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86241324	T	T	86241324	1	4	9	0	1	0	0	0	0	0	0	0	3715	1247	43	2		2	COL24A1	1	86241324	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	454108	86241324	163009297	591	8742											
COL24A1	255631	broad.mit.edu	37	chr1	86375653	86375653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataacacctttttctccctGcggacctagtgggcctggac	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86375653	T	T	86375653	3	4	9	1	0	0	0	0	1	0	0	0	3715	1328	46	3	2634	3	COL24A1	1	86375653	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	134329	86375653	162874968	592	8743											
COL24A1	255631	broad.mit.edu	37	chr1	86515808	86515808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagggaatggacttaccCgttctccttcaggtcccagt	10	11	2	1	rs75596213	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86515808	A	A	86515808	3	1	9	1	0	0	0	0	1	0	0	0	3715	666	23	1	3440	1	COL24A1	1	86515808	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140155	86515808	162734813	593	8744											
COL24A1	255631	broad.mit.edu	37	chr1	86622095	86622095	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatttgtatgcatttgtcCgtgcagcaaagcgctaacgg	11	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86622095	A	A	86622095	1	1	9	0	1	0	0	0	0	0	0	0	3715	667	23	1		1	COL24A1	1	86622095	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	106287	86622095	162628526	594	8745											
CLCA4	22802	broad.mit.edu	37	chr1	87025534	87025534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtccactcttaagttGggaaatgcctgtcacaaaac	7	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87025534	T	T	87025534	1	4	9	0	1	0	0	0	0	0	0	0	3490	1363	47	2		2	CLCA4	1	87025534	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	403439	87025534	162225087	595	8746											
SH3GLB1	51100	broad.mit.edu	37	chr1	87188316	87188316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttaaattttcttactcCtttaagaaactttatagaag	4	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87188316	A	A	87188316	3	1	9	1	0	0	0	0	1	0	0	0	14366	681	24	2	451	2	SH3GLB1	1	87188316	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	162782	87188316	162062305	596	8747											
HS2ST1	9653	broad.mit.edu	37	chr1	87380690	87380690	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccgctccccgccccccgcGgtatgtcttgatcccgagca	9	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87380690	C	C	87380690	1	2	9	0	1	0	0	0	0	0	0	0	7429	1131	39	4		4	HS2ST1	1	87380690	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	192374	87380690	161869931	597	8748											
PKN2	5586	broad.mit.edu	37	chr1	89273442	89273442	+	Silent	SNP	C	A	A													agaaaggagatattgtggctCgagatgaagtagacaggtta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89273442	A	A	89273442	2	1	9	1	0	0	0	0	0	0	0	1	12075	876	31	3		3	PKN2	1	89273442	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1892752	89273442	159977179	598	8749	33	2									
PKN2	5586	broad.mit.edu	37	chr1	89273449	89273449	+	Missense_Mutation	SNP	A	T	T													agatattgtggctcgagatgAagtagacaggttagttttta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89273449	T	T	89273449	3	4	9	1	0	0	0	0	1	0	0	0	12075	246	9	5	2151	5	PKN2	1	89273449	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	7	89273449	159977172	599	8750	33	2									
GTF2B	2959	broad.mit.edu	37	chr1	89352964	89352964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaccaagccacattcaGgacagatcatatcaccggct	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89352964	T	T	89352964	3	4	9	1	0	0	0	0	1	0	0	0	6920	1000	35	2	870	2	GTF2B	1	89352964	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	79515	89352964	159897657	600	8751											
RBMXL1	494115	broad.mit.edu	37	chr1	89449067	89449067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggtcctctttttactGggagtggtcccctggaagaa	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89449067	T	T	89449067	3	4	9	1	0	0	0	0	1	0	0	0	13261	1348	47	2	733	2	RBMXL1	1	89449067	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96103	89449067	159801554	601	8752											
GBP2	2634	broad.mit.edu	37	chr1	89583306	89583306	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtagtcatcagcagtgatGggttctccatctacttccag	9	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89583306	T	T	89583306	2	4	9	1	0	0	0	0	0	0	0	1	6336	1335	47	2		2	GBP2	1	89583306	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	134239	89583306	159667315	602	8753											
GBP4	115361	broad.mit.edu	37	chr1	89654280	89654280	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccttaactccttttctGggcactagcttatagtccca	5	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89654280	T	T	89654280	2	4	9	1	0	0	0	0	0	0	0	1	6338	1335	47	2		2	GBP4	1	89654280	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70974	89654280	159596341	603	8754											
GBP5	115362	broad.mit.edu	37	chr1	89729594	89729594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggatgcttccaggttcCgtttacaaatgtcattctgt	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89729594	A	A	89729594	3	1	9	1	0	0	0	0	1	0	0	0	6339	652	23	1	589	1	GBP5	1	89729594	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75314	89729594	159521027	604	8755											
ZNF326	284695	broad.mit.edu	37	chr1	90473106	90473106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggaagcaccttactccCgttcaaaattgaggcctggg	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90473106	A	A	90473106	3	1	9	1	0	0	0	0	1	0	0	0	17972	652	23	1	434	1	ZNF326	1	90473106	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	743512	90473106	158777515	605	8756											
BARHL2	343472	broad.mit.edu	37	chr1	91180282	91180282	+	Silent	SNP	C	A	A													gggggactctcacggctactCgtaatctcccggtctccttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91180282	A	A	91180282	2	1	9	1	0	0	0	0	0	0	0	1	1319	871	31	3		3	BARHL2	1	91180282	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	707176	91180282	158070339	606	8757	34	2									
BARHL2	343472	broad.mit.edu	37	chr1	91180292	91180292	+	Missense_Mutation	SNP	C	G	G													cacggctactcgtaatctccCggtctccttcctcctttgtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91180292	G	G	91180292	3	3	9	1	0	0	0	0	1	0	0	0	1319	652	23	4	524	4	BARHL2	1	91180292	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	91180292	158070329	607	8758	34	2									
BARHL2	343472	broad.mit.edu	37	chr1	91182731	91182731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctattccaaaactcgaccCgctggccccttccattgtca	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91182731	A	A	91182731	3	1	9	1	0	0	0	0	1	0	0	0	1319	652	23	1	1153	1	BARHL2	1	91182731	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2439	91182731	158067890	608	8759											
ZNF644	84146	broad.mit.edu	37	chr1	91403086	91403086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggctgatacatcaacGgactatcctcatttaatgga	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91403086	T	T	91403086	3	4	9	1	0	0	0	0	1	0	0	0	18187	1116	39	1	351	1	ZNF644	1	91403086	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	220355	91403086	157847535	609	8760											
ZNF644	84146	broad.mit.edu	37	chr1	91403345	91403345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtctttaggccattacGgtatgcttcaagaggtataa	9	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91403345	T	T	91403345	3	4	9	1	0	0	0	0	1	0	0	0	18187	1116	39	1	610	1	ZNF644	1	91403345	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	259	91403345	157847276	610	8761											
ZNF644	84146	broad.mit.edu	37	chr1	91403421	91403421	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgagctacaaatggtctGggaataatacgacgactgtt	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91403421	T	T	91403421	2	4	9	1	0	0	0	0	0	0	0	1	18187	1335	47	2		2	ZNF644	1	91403421	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76	91403421	157847200	611	8762											
ZNF644	84146	broad.mit.edu	37	chr1	91403840	91403840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaacttaccttttctaactCgtttaacaggtgttcctgtg	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91403840	A	A	91403840	3	1	9	1	0	0	0	0	1	0	0	0	18187	884	31	3	928	3	ZNF644	1	91403840	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	419	91403840	157846781	612	8763											
ZNF644	84146	broad.mit.edu	37	chr1	91403925	91403925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggtgatacaacatgacGggcttcatagcttaatcctg	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91403925	T	T	91403925	3	4	9	1	0	0	0	0	1	0	0	0	18187	1116	39	1	1013	1	ZNF644	1	91403925	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85	91403925	157846696	613	8764											
ZNF644	84146	broad.mit.edu	37	chr1	91405096	91405096	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgatgaatgcaagtactcCgtgtgcttttttaaaacact	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91405096	A	A	91405096	2	1	9	1	0	0	0	0	0	0	0	1	18187	639	23	1		1	ZNF644	1	91405096	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1171	91405096	157845525	614	8765											
ZNF644	84146	broad.mit.edu	37	chr1	91405547	91405547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgcgatctcgaaatgtcCgtccacattctctacaagca	6	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91405547	A	A	91405547	3	1	9	1	0	0	0	0	1	0	0	0	18187	652	23	1	2635	1	ZNF644	1	91405547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	451	91405547	157845074	615	8766											
ZNF644	84146	broad.mit.edu	37	chr1	91406748	91406748	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttttggcttatgaactcCgctctctttgtctgagataa	7	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91406748	A	A	91406748	4	1	9	1	0	0	0	0	0	1	0	0	18187	661	23	1	3836	1	ZNF644	1	91406748	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1201	91406748	157843873	616	8767											
ZNF644	84146	broad.mit.edu	37	chr1	91406850	91406850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatattgttggcaagccCatttaacacatttagtctag	6	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91406850	A	A	91406850	3	1	9	1	0	0	0	0	1	0	0	0	18187	594	21	2	3938	2	ZNF644	1	91406850	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	91406850	157843771	617	8768											
ZNF644	84146	broad.mit.edu	37	chr1	91447951	91447951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaatacacacaatgacCaaggtttaattttttgtttc	5	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91447951	A	A	91447951	1	1	9	0	1	0	0	0	0	0	0	0	18187	609	21	2		2	ZNF644	1	91447951	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	41101	91447951	157802670	618	8769											
HFM1	164045	broad.mit.edu	37	chr1	91727870	91727870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttataatttgaagaatttGggtttttttcagagaaagta	8	1	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91727870	T	T	91727870	3	4	9	1	0	0	0	0	1	0	0	0	7150	1348	47	2	149	2	HFM1	1	91727870	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	279919	91727870	157522751	619	8770											
HFM1	164045	broad.mit.edu	37	chr1	91727996	91727996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgaaagtttaagcactcGggcaaaatttaaaagaaaaa	7	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91727996	T	T	91727996	1	4	9	0	1	0	0	0	0	0	0	0	7150	1131	39	1		1	HFM1	1	91727996	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	126	91727996	157522625	620	8771											
HFM1	164045	broad.mit.edu	37	chr1	91728125	91728125	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatttgataaagaaatatcCgacatctcatgtgatgaaac	7	6	1	4	rs148254635		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91728125	A	A	91728125	2	1	9	1	0	0	0	0	0	0	0	1	7150	639	23	1		1	HFM1	1	91728125	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	129	91728125	157522496	621	8772											
HFM1	164045	broad.mit.edu	37	chr1	91779588	91779588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagcaatctttttagccCaacttccagcttttagcaaa	4	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91779588	A	A	91779588	3	1	9	1	0	0	0	0	1	0	0	0	7150	595	21	2	1181	2	HFM1	1	91779588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51463	91779588	157471033	622	8773											
HFM1	164045	broad.mit.edu	37	chr1	91781683	91781683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactttaagttcatattttGgtagatacatcacagtttct	5	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91781683	T	T	91781683	3	4	9	1	0	0	0	0	1	0	0	0	7150	1348	47	2	1402	2	HFM1	1	91781683	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2095	91781683	157468938	623	8774											
HFM1	164045	broad.mit.edu	37	chr1	91788779	91788779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacatttcagtagttgtcCatttaatgaagtctattttt	5	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91788779	A	A	91788779	1	1	9	0	1	0	0	0	0	0	0	0	7150	609	21	2		2	HFM1	1	91788779	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7096	91788779	157461842	624	8775											
HFM1	164045	broad.mit.edu	37	chr1	91817086	91817086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagcattagtatctttttGgaacttttttttatactacc	4	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91817086	T	T	91817086	1	4	9	0	1	0	0	0	0	0	0	0	7150	1363	47	2		2	HFM1	1	91817086	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28307	91817086	157433535	625	8776											
HFM1	164045	broad.mit.edu	37	chr1	91841143	91841143	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcaattttgtagttgaGggttaaatcaaacttaaact	8	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91841143	T	T	91841143	3	4	9	1	0	0	0	0	1	0	0	0	7150	1000	35	2	2882	2	HFM1	1	91841143	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24057	91841143	157409478	626	8777											
HFM1	164045	broad.mit.edu	37	chr1	91841263	91841263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacagctggtctttcacCatctgaaagccattctgcaa	6	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91841263	A	A	91841263	3	1	9	1	0	0	0	0	1	0	0	0	7150	594	21	2	3002	2	HFM1	1	91841263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120	91841263	157409358	627	8778											
HFM1	164045	broad.mit.edu	37	chr1	91843969	91843969	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcattcattacctcatcaatGagaaacagtcgaaccagctg	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91843969	T	T	91843969	2	4	9	1	0	0	0	0	0	0	0	1	7150	1277	45	3		3	HFM1	1	91843969	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2706	91843969	157406652	628	8779											
HFM1	164045	broad.mit.edu	37	chr1	91844009	91844009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccaaagagttgtctctcCatttcctagtcatgctatcc	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91844009	A	A	91844009	3	1	9	1	0	0	0	0	1	0	0	0	7150	595	21	2	3240	2	HFM1	1	91844009	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	91844009	157406612	629	8780											
CDC7	8317	broad.mit.edu	37	chr1	91967308	91967308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggattcagatggatgagcCaatggctttttctccccagc	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91967308	A	A	91967308	3	1	9	1	0	0	0	0	1	0	0	0	3114	594	21	2	37	2	CDC7	1	91967308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123299	91967308	157283313	630	8781											
CDC7	8317	broad.mit.edu	37	chr1	91967324	91967324	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccaatggctttttctccCcagcgtgaccggtttcaggc	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91967324	G	G	91967324	2	3	9	1	0	0	0	0	0	0	0	1	3114	610	22	4		4	CDC7	1	91967324	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	91967324	157283297	631	8782											
CDC7	8317	broad.mit.edu	37	chr1	91973450	91973450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctttatgaagctgtacCacagcttagtaatgtgttta	9	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91973450	A	A	91973450	3	1	9	1	0	0	0	0	1	0	0	0	3114	594	21	2	161	2	CDC7	1	91973450	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6126	91973450	157277171	632	8783											
CDC7	8317	broad.mit.edu	37	chr1	91989686	91989686	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatggattctagcactccCaagttaacaagtgatataca	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91989686	A	A	91989686	2	1	9	1	0	0	0	0	0	0	0	1	3114	581	21	2		2	CDC7	1	91989686	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16236	91989686	157260935	633	8784											
TGFBR3	7049	broad.mit.edu	37	chr1	92182151	92182151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttcaggtcgggtgaacaGggaagcatctccttcatcca	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92182151	T	T	92182151	3	4	9	1	0	0	0	0	1	0	0	0	15946	991	35	2	902	2	TGFBR3	1	92182151	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	192465	92182151	157068470	634	8785											
TGFBR3	7049	broad.mit.edu	37	chr1	92182163	92182163	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaacagggaagcatctcCttcatccatatctcccggaa	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92182163	A	A	92182163	4	1	9	1	0	0	0	0	0	1	0	0	15946	690	24	2	914	2	TGFBR3	1	92182163	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	92182163	157068458	635	8786											
TGFBR3	7049	broad.mit.edu	37	chr1	92182240	92182240	+	Missense_Mutation	SNP	C	A	A													ctggccaaccactactgtccCcaagggctggaacctgtatc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92182240	A	A	92182240	3	1	9	1	0	0	0	0	1	0	0	0	15946	623	22	2	991	2	TGFBR3	1	92182240	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	92182240	157068381	636	8787	35	2									
TGFBR3	7049	broad.mit.edu	37	chr1	92182244	92182244	+	Missense_Mutation	SNP	G	T	T													ccaaccactactgtccccaaGggctggaacctgtatcacaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92182244	T	T	92182244	3	4	9	1	0	0	0	0	1	0	0	0	15946	1000	35	2	995	2	TGFBR3	1	92182244	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	92182244	157068377	637	8788	35	2									
TGFBR3	7049	broad.mit.edu	37	chr1	92182289	92182289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcaaagaaagcacagcCaatgttataaaaacaccaaa	6	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92182289	A	A	92182289	1	1	9	0	1	0	0	0	0	0	0	0	15946	609	21	2		2	TGFBR3	1	92182289	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	92182289	157068332	638	8789											
TGFBR3	7049	broad.mit.edu	37	chr1	92184906	92184907	+	Missense_Mutation	DNP	CG	AT	AT													caccatcaagggctgaccacCggggccgagtaccgcagcca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	92184907	AT	AT	92184906	3	1	9	1	0	0	0	0	1	0	0	0	15946	652	23	1	1058	1	TGFBR3	1	92184906	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	2617	92184906	157065715	639	8790											
TGFBR3	7049	broad.mit.edu	37	chr1	92185007	92185007	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagggtgacgtccatcccCgagtagccactggcctaaaa	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92185007	A	A	92185007	2	1	9	1	0	0	0	0	0	0	0	1	15946	639	23	1		1	TGFBR3	1	92185007	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	101	92185007	157065614	640	8791											
TGFBR3	7049	broad.mit.edu	37	chr1	92185583	92185583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtatgctgggaatgacaGggtcctttggccgagggagc	17	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92185583	T	T	92185583	3	4	9	1	0	0	0	0	1	0	0	0	15946	1000	35	2	1311	2	TGFBR3	1	92185583	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	576	92185583	157065038	641	8792											
TGFBR3	7049	broad.mit.edu	37	chr1	92262915	92262915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcacctcctgtggcagccCagttgtgcctctgctggcac	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92262915	A	A	92262915	3	1	9	1	0	0	0	0	1	0	0	0	15946	594	21	2	2440	2	TGFBR3	1	92262915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77332	92262915	156987706	642	8793											
BRDT	676	broad.mit.edu	37	chr1	92428464	92428464	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcatagtttttcatggccCtttcaacgtcctgtggatgc	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92428464	A	A	92428464	2	1	9	1	0	0	0	0	0	0	0	1	1517	668	24	2		2	BRDT	1	92428464	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	165549	92428464	156822157	643	8794											
BRDT	676	broad.mit.edu	37	chr1	92445157	92445157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgcatttttcaaagatccCgattgaacctgttgagagta	8	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92445157	A	A	92445157	3	1	9	1	0	0	0	0	1	0	0	0	1517	652	23	1	1156	1	BRDT	1	92445157	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16693	92445157	156805464	644	8795											
BRDT	676	broad.mit.edu	37	chr1	92445252	92445252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatgaagcctcctctgaaGggaactcttctgatgattct	8	10	4	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92445252	T	T	92445252	3	4	9	1	0	0	0	0	1	0	0	0	1517	1000	35	2	1251	2	BRDT	1	92445252	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95	92445252	156805369	645	8796											
BRDT	676	broad.mit.edu	37	chr1	92446421	92446421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagacaataacgataagttGgactaaatttagtttttgtt	7	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92446421	T	T	92446421	1	4	9	0	1	0	0	0	0	0	0	0	1517	1363	47	2		2	BRDT	1	92446421	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1169	92446421	156804200	646	8797											
BRDT	676	broad.mit.edu	37	chr1	92470045	92470045	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaggtgtaatgaaatcCtcagatgagctcttcaacca	7	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92470045	A	A	92470045	2	1	9	1	0	0	0	0	0	0	0	1	1517	668	24	2		2	BRDT	1	92470045	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23624	92470045	156780576	647	8798											
BRDT	676	broad.mit.edu	37	chr1	92470103	92470104	+	Missense_Mutation	DNP	CG	AT	AT													tagaaaaggaagtaaaagctCggacacaggaactcatacgg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	92470104	AT	AT	92470103	3	1	9	1	0	0	0	0	1	0	0	0	1517	875	31	3	2583	3	BRDT	1	92470103	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	58	92470103	156780518	648	8799											
BRDT	676	broad.mit.edu	37	chr1	92470787	92470787	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagctcaagataaatcCaaactctggcttctcaaaga	6	10	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92470787	A	A	92470787	2	1	9	1	0	0	0	0	0	0	0	1	1517	581	21	2		2	BRDT	1	92470787	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	684	92470787	156779834	649	8800											
EPHX4	253152	broad.mit.edu	37	chr1	92511161	92511161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaattgccatctgttatcCtgaaatggtgatgaagctta	9	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92511161	A	A	92511161	3	1	9	1	0	0	0	0	1	0	0	0	5224	681	24	2	562	2	EPHX4	1	92511161	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40374	92511161	156739460	650	8801											
EPHX4	253152	broad.mit.edu	37	chr1	92515842	92515842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtaatttataccccttGgataaggtctaacatggcat	8	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92515842	T	T	92515842	1	4	9	0	1	0	0	0	0	0	0	0	5224	1363	47	2		2	EPHX4	1	92515842	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4681	92515842	156734779	651	8802											
BTBD8	284697	broad.mit.edu	37	chr1	92612794	92612794	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattattgctcattcagttGgagtggaaagtctttttgct	10	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92612794	T	T	92612794	4	4	9	1	0	0	0	0	0	1	0	0	1557	1349	47	2	1018	2	BTBD8	1	92612794	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96952	92612794	156637827	652	8803											
GLMN	11146	broad.mit.edu	37	chr1	92712574	92712574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaagatagcaagacccCgtttctaaagaagaaaaagg	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92712574	A	A	92712574	1	1	9	0	1	0	0	0	0	0	0	0	6512	667	23	1		1	GLMN	1	92712574	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	99780	92712574	156538047	653	8804											
RPAP2	79871	broad.mit.edu	37	chr1	92767136	92767136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatattacagaagagttcCtaatggagtgtgtatgtgtt	11	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92767136	A	A	92767136	3	1	9	1	0	0	0	0	1	0	0	0	13653	680	24	2	233	2	RPAP2	1	92767136	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54562	92767136	156483485	654	8805											
RPAP2	79871	broad.mit.edu	37	chr1	92788948	92788948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacttttctattgttttcGggttttatttgctatttttt	5	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92788948	T	T	92788948	1	4	9	0	1	0	0	0	0	0	0	0	13653	1131	39	1		1	RPAP2	1	92788948	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21812	92788948	156461673	655	8806											
RPAP2	79871	broad.mit.edu	37	chr1	92789671	92789671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctgtgtgtctgaaaccCgaagcctctctggttaaaga	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92789671	A	A	92789671	2	1	9	1	0	0	0	0	0	0	0	1	13653	639	23	1		1	RPAP2	1	92789671	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	723	92789671	156460950	656	8807											
RPAP2	79871	broad.mit.edu	37	chr1	92798983	92798983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactgatagactcaagttcCcagaaccagattagaaaacg	7	11	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92798983	A	A	92798983	2	1	9	1	0	0	0	0	0	0	0	1	13653	610	22	2		2	RPAP2	1	92798983	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9312	92798983	156451638	657	8808											
RPAP2	79871	broad.mit.edu	37	chr1	92846326	92846326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacattctcaggaaggtatGgtgtttacacggtttctaga	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92846326	T	T	92846326	3	4	9	1	0	0	0	0	1	0	0	0	13653	1348	47	2	1780	2	RPAP2	1	92846326	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47343	92846326	156404295	658	8809											
RPAP2	79871	broad.mit.edu	37	chr1	92846490	92846490	+	Intron	DEL	T	-	-													tttgttgcctatgtggattcTttttttttttaattggaaat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92846490	-	-	92846490	6	5	9	0	1	1	0	1	0	0	0	0	13653	1624	56	0		0	RPAP2	1	92846490	Intron	DEL	T	TCGA-05-4396-01A-21D-1855-08	164	92846490	156404131	659	8810											
EVI5	7813	broad.mit.edu	37	chr1	93070859	93070859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactttattattttcatatGgtacctggatttcaagctca	6	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93070859	T	T	93070859	1	4	9	0	1	0	0	0	0	0	0	0	5331	1363	47	2		2	EVI5	1	93070859	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	224369	93070859	156179762	660	8811											
EVI5	7813	broad.mit.edu	37	chr1	93101827	93101827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactcagcttcactcagtcGggcttggaccaattccttct	8	13	4	1	rs143887144		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93101827	T	T	93101827	2	4	9	1	0	0	0	0	0	0	0	1	5331	1124	39	1		1	EVI5	1	93101827	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30968	93101827	156148794	661	8812											
EVI5	7813	broad.mit.edu	37	chr1	93159515	93159515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgttaatagtgaaatcCaaagacattcaagaaattat	7	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93159515	A	A	93159515	1	1	9	0	1	0	0	0	0	0	0	0	5331	609	21	2		2	EVI5	1	93159515	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57688	93159515	156091106	662	8813											
EVI5	7813	broad.mit.edu	37	chr1	93202138	93202138	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgatactgtgttcttcaccCatgagagagtagagctcagc	11	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93202138	G	G	93202138	3	3	9	1	0	0	0	0	1	0	0	0	5331	595	21	4	2402	4	EVI5	1	93202138	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42623	93202138	156048483	663	8814											
MTF2	22823	broad.mit.edu	37	chr1	93545060	93545060	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttttcctgtatgaagcGgttggcaccactgaagtgac	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93545060	T	T	93545060	1	4	9	0	1	0	0	0	0	0	0	0	10017	1131	39	1		1	MTF2	1	93545060	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	342922	93545060	155705561	664	8815											
MTF2	22823	broad.mit.edu	37	chr1	93575854	93575854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgtcgaaaccaaaagaccCcaacatccttgaccaagctg	6	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93575854	A	A	93575854	3	1	9	1	0	0	0	0	1	0	0	0	10017	623	22	2	79	2	MTF2	1	93575854	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30794	93575854	155674767	665	8816											
MTF2	22823	broad.mit.edu	37	chr1	93586208	93586208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatacattaatgaaaactgGgatagattgcaccctggaga	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93586208	T	T	93586208	3	4	9	1	0	0	0	0	1	0	0	0	10017	1241	43	2	934	2	MTF2	1	93586208	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10354	93586208	155664413	666	8817											
MTF2	22823	broad.mit.edu	37	chr1	93599536	93599536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatttaccttgttctataGggtaaatagaaagttatttt	8	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93599536	T	T	93599536	3	4	9	1	0	0	0	0	1	0	0	0	10017	1014	35	2	1368	2	MTF2	1	93599536	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13328	93599536	155651085	667	8818											
TMED5	50999	broad.mit.edu	37	chr1	93625810	93625810	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagcatacatgagaaaaaCatatattacaaattctggaa	5	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93625810	G	G	93625810	1	3	9	0	1	0	0	0	0	0	0	0	16130	493	17	4		4	TMED5	1	93625810	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26274	93625810	155624811	668	8819											
CCDC18	343099	broad.mit.edu	37	chr1	93646319	93646319	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccggggttcgctggttctccGagttgtgtccgaggcttcca	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93646319	T	T	93646319	4	4	9	1	0	0	0	0	0	1	0	0	2821	1059	37	3	234	3	CCDC18	1	93646319	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20509	93646319	155604302	669	8820											
CCDC18	343099	broad.mit.edu	37	chr1	93683390	93683390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcaaagaaaattcacttGgaacagcataaagaaatgga	8	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93683390	T	T	93683390	3	4	9	1	0	0	0	0	1	0	0	0	2821	1339	47	2	2334	2	CCDC18	1	93683390	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37071	93683390	155567231	670	8821											
CCDC18	343099	broad.mit.edu	37	chr1	93687225	93687225	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaagaaaagactatgtcCatgttgcaacaagatataat	7	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93687225	A	A	93687225	2	1	9	1	0	0	0	0	0	0	0	1	2821	581	21	2		2	CCDC18	1	93687225	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3835	93687225	155563396	671	8822											
CCDC18	343099	broad.mit.edu	37	chr1	93687288	93687288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactagatagactcttgacGgaaagcaaaggggtaaaatc	10	7	2	3	rs138388409	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93687288	T	T	93687288	2	4	9	1	0	0	0	0	0	0	0	1	2821	1103	39	1		1	CCDC18	1	93687288	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	93687288	155563333	672	8823											
CCDC18	343099	broad.mit.edu	37	chr1	93687312	93687312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaggggtaaaatcatcCttataaaagtgctatttaga	8	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93687312	A	A	93687312	1	1	9	0	1	0	0	0	0	0	0	0	2821	696	24	2		2	CCDC18	1	93687312	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	93687312	155563309	673	8824											
CCDC18	343099	broad.mit.edu	37	chr1	93698130	93698130	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggagagctagaagatactCaaactaaacttgaaaaacag	8	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93698130	A	A	93698130	3	1	9	1	0	0	0	0	1	0	0	0	2821	827	29	3	2864	3	CCDC18	1	93698130	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10818	93698130	155552491	674	8825											
CCDC18	343099	broad.mit.edu	37	chr1	93705303	93705303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaagccttgcaaaaacGggaagtacttgagactgaac	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93705303	T	T	93705303	3	4	9	1	0	0	0	0	1	0	0	0	2821	1116	39	1	3267	1	CCDC18	1	93705303	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7173	93705303	155545318	675	8826											
CCDC18	343099	broad.mit.edu	37	chr1	93711736	93711736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacttaaagagagaaattGggaactaaagcaaagagcag	12	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93711736	T	T	93711736	3	4	9	1	0	0	0	0	1	0	0	0	2821	1357	47	2	3496	2	CCDC18	1	93711736	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6433	93711736	155538885	676	8827											
FNBP1L	54874	broad.mit.edu	37	chr1	94014920	94014920	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accacaatgagtttgatgatGaatttgaggatgatgatccc	10	6	0	7			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94014920	A	A	94014920	3	1	9	1	0	0	0	0	1	0	0	0	6024	1291	45	4	1646	4	FNBP1L	1	94014920	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	303184	94014920	155235701	677	8828											
FNBP1L	54874	broad.mit.edu	37	chr1	94017906	94017906	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactttaaactgaacacccCttttggttttaccaaaggtc	6	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94017906	A	A	94017906	1	1	9	0	1	0	0	0	0	0	0	0	6024	696	24	2		2	FNBP1L	1	94017906	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	2986	94017906	155232715	678	8829											
FNBP1L	54874	broad.mit.edu	37	chr1	94017977	94017977	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgcaggttcctgaagaGggtttctgaggaaatgggca	16	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94017977	T	T	94017977	1	4	9	0	1	0	0	0	0	0	0	0	6024	1015	35	2		2	FNBP1L	1	94017977	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	71	94017977	155232644	679	8830											
BCAR3	8412	broad.mit.edu	37	chr1	94033261	94033261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtactccactccccagcGgggtagccccatgcttgctc	9	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94033261	T	T	94033261	1	4	9	0	1	0	0	0	0	0	0	0	1354	1131	39	1		1	BCAR3	1	94033261	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15284	94033261	155217360	680	8831											
BCAR3	8412	broad.mit.edu	37	chr1	94037350	94037350	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcggtcctccaaagtgccCgtgcatcccagaatgtccac	9	16	0	1	rs138631396	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94037350	A	A	94037350	2	1	9	1	0	0	0	0	0	0	0	1	1354	639	23	1		1	BCAR3	1	94037350	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4089	94037350	155213271	681	8832											
BCAR3	8412	broad.mit.edu	37	chr1	94047989	94047989	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggaactttgactcaaactCgttgggcctgaaggaggaga	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94047989	A	A	94047989	4	1	9	1	0	0	0	0	0	1	0	0	1354	893	31	3	946	3	BCAR3	1	94047989	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10639	94047989	155202632	682	8833											
BCAR3	8412	broad.mit.edu	37	chr1	94048440	94048440	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagggcaggctcgcttccCgtcctgaacacaggtgagtt	12	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94048440	A	A	94048440	2	1	9	1	0	0	0	0	0	0	0	1	1354	639	23	1		1	BCAR3	1	94048440	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	451	94048440	155202181	683	8834											
BCAR3	8412	broad.mit.edu	37	chr1	94049651	94049651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatgtgatccaggcaggcGggctggctaccactcttttc	12	12	1	1	rs143814614		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94049651	T	T	94049651	2	4	9	1	0	0	0	0	0	0	0	1	1354	1103	39	1		1	BCAR3	1	94049651	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1211	94049651	155200970	684	8835											
BCAR3	8412	broad.mit.edu	37	chr1	94057972	94057972	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaacacagagtcaaccatGagctcaccctgcccaggcca	8	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94057972	T	T	94057972	1	4	9	0	1	0	0	0	0	0	0	0	1354	1305	45	3		3	BCAR3	1	94057972	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8321	94057972	155192649	685	8836											
BCAR3	8412	broad.mit.edu	37	chr1	94107879	94107879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcacatattccacagttGggtccagaagatgtggatcc	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94107879	T	T	94107879	3	4	9	1	0	0	0	0	1	0	0	0	1354	1348	47	2	2179	2	BCAR3	1	94107879	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49907	94107879	155142742	686	8837											
DNTTIP2	30836	broad.mit.edu	37	chr1	94337581	94337581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaacactacagtgctttcCaaactaaaattcacagatca	4	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94337581	A	A	94337581	1	1	9	0	1	0	0	0	0	0	0	0	4722	609	21	2		2	DNTTIP2	1	94337581	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	229702	94337581	154913040	687	8838											
DNTTIP2	30836	broad.mit.edu	37	chr1	94342244	94342245	+	Missense_Mutation	DNP	CC	AA	AA													cacattcaaaatctacattcCcttcactgttcatgtcttca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	94342245	AA	AA	94342244	3	1	9	1	0	0	0	0	1	0	0	0	4722	623	22	2	1047	2	DNTTIP2	1	94342244	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	4663	94342244	154908377	688	8839											
DNTTIP2	30836	broad.mit.edu	37	chr1	94342367	94342367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctttttgttgttattcCatctgcctacttccacagtt	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94342367	A	A	94342367	3	1	9	1	0	0	0	0	1	0	0	0	4722	595	21	2	1170	2	DNTTIP2	1	94342367	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	94342367	154908254	689	8840											
DNTTIP2	30836	broad.mit.edu	37	chr1	94342755	94342755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagatcttgcttgtaaatGggaagtttgtctggtatctg	12	4	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94342755	T	T	94342755	3	4	9	1	0	0	0	0	1	0	0	0	4722	1348	47	2	1558	2	DNTTIP2	1	94342755	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	388	94342755	154907866	690	8841											
DNTTIP2	30836	broad.mit.edu	37	chr1	94343264	94343264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatggttcagtcccctttGgtagtgagcctgtagttctg	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94343264	T	T	94343264	3	4	9	1	0	0	0	0	1	0	0	0	4722	1348	47	2	2067	2	DNTTIP2	1	94343264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	509	94343264	154907357	691	8842											
GCLM	2730	broad.mit.edu	37	chr1	94362274	94362274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagttttctaattcctccCagtaaggctgtaaatgctcc	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94362274	A	A	94362274	3	1	9	1	0	0	0	0	1	0	0	0	6358	595	21	2	396	2	GCLM	1	94362274	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19010	94362274	154888347	692	8843											
ABCA4	24	broad.mit.edu	37	chr1	94463625	94463625	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaagcaggtcgtccttcGgggatttgatcttcattgtg	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94463625	T	T	94463625	3	4	9	1	0	0	0	0	1	0	0	0	34	1116	39	1	312	1	ABCA4	1	94463625	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101351	94463625	154786996	693	8844											
ABCA4	24	broad.mit.edu	37	chr1	94471032	94471032	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggtacacctcgaagccGggcataaaggtaaagatgtt	12	8	0	1	rs61750643		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94471032	T	T	94471032	2	4	9	1	0	0	0	0	0	0	0	1	34	1115	39	1		1	ABCA4	1	94471032	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7407	94471032	154779589	694	8845											
ABCA4	24	broad.mit.edu	37	chr1	94473282	94473282	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccggcaccattcactccCaggaggccaaagcactagga	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94473282	A	A	94473282	2	1	9	1	0	0	0	0	0	0	0	1	34	581	21	2		2	ABCA4	1	94473282	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2250	94473282	154777339	695	8846											
ABCA4	24	broad.mit.edu	37	chr1	94476879	94476879	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcaatgaggccccggccCaggcagaagtgggggaagac	17	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94476879	A	A	94476879	2	1	9	1	0	0	0	0	0	0	0	1	34	581	21	2		2	ABCA4	1	94476879	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3597	94476879	154773742	696	8847											
ABCA4	24	broad.mit.edu	37	chr1	94476982	94476982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggaaacggggcaaaccCcaccccccctctcttcagca	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94476982	A	A	94476982	1	1	9	0	1	0	0	0	0	0	0	0	34	638	22	2		2	ABCA4	1	94476982	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	94476982	154773639	697	8848											
ABCA4	24	broad.mit.edu	37	chr1	94480052	94480052	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgctcgaccaacacatactCtactatcctactaatcaaac	2	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94480052	A	A	94480052	1	1	9	0	1	0	0	0	0	0	0	0	34	928	32	3		3	ABCA4	1	94480052	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3070	94480052	154770569	698	8849											
ABCA4	24	broad.mit.edu	37	chr1	94486715	94486715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccaaatcagcacttcgcGgtggtgagaatcctctcagg	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94486715	T	T	94486715	1	4	9	0	1	0	0	0	0	0	0	0	34	1131	39	1		1	ABCA4	1	94486715	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6663	94486715	154763906	699	8850											
ABCA4	24	broad.mit.edu	37	chr1	94486895	94486895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccttaggcaggctggccCgtaagatggcgttgtgggcc	16	10	0	1	rs61751403		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94486895	A	A	94486895	3	1	9	1	0	0	0	0	1	0	0	0	34	652	23	1	1966	1	ABCA4	1	94486895	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	180	94486895	154763726	700	8851											
ABCA4	24	broad.mit.edu	37	chr1	94490566	94490566	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcggagatgttcctgtcCgtcaggtcttgtagaatttc	11	8	2	2	rs138831474	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94490566	A	A	94490566	2	1	9	1	0	0	0	0	0	0	0	1	34	639	23	1		1	ABCA4	1	94490566	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3671	94490566	154760055	701	8852											
ABCA4	24	broad.mit.edu	37	chr1	94502297	94502297	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggctccagcaccataccCgcaaacagaggtcctgaatc	8	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94502297	A	A	94502297	2	1	9	1	0	0	0	0	0	0	0	1	34	666	23	1		1	ABCA4	1	94502297	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11731	94502297	154748324	702	8853											
ABCA4	24	broad.mit.edu	37	chr1	94502327	94502327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctgaatcagaatcctcCgtgaccttcagaaaaatctg	8	11	3	4	rs75092434	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94502327	A	A	94502327	2	1	9	1	0	0	0	0	0	0	0	1	34	639	23	1		1	ABCA4	1	94502327	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	94502327	154748294	703	8854											
ABCA4	24	broad.mit.edu	37	chr1	94512509	94512509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagctccattgtggcccaGgaatgcggtgatctggttct	12	12	2	1	rs61750203		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94512509	T	T	94512509	3	4	9	1	0	0	0	0	1	0	0	0	34	991	35	2	4065	2	ABCA4	1	94512509	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10182	94512509	154738112	704	8855											
ABCA4	24	broad.mit.edu	37	chr1	94512619	94512619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacgcataccccaggaaccCaccctggatgctcacgttca	7	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94512619	A	A	94512619	3	1	9	1	0	0	0	0	1	0	0	0	34	595	21	2	4175	2	ABCA4	1	94512619	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110	94512619	154738002	705	8856											
ABCA4	24	broad.mit.edu	37	chr1	94528754	94528754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtagagagctggtccaGggatacatgtcagggaatac	16	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94528754	T	T	94528754	2	4	9	1	0	0	0	0	0	0	0	1	34	987	35	2		2	ABCA4	1	94528754	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16135	94528754	154721867	706	8857											
ABCA4	24	broad.mit.edu	37	chr1	94543340	94543340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgtcagcctggctttccCgagggcccttgtagaggaag	14	11	1	1	rs145614671		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94543340	A	A	94543340	3	1	9	1	0	0	0	0	1	0	0	0	34	652	23	1	5521	1	ABCA4	1	94543340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14586	94543340	154707281	707	8858											
ABCA4	24	broad.mit.edu	37	chr1	94543433	94543433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttttactgttgggttcCccagggtatccttgggaaga	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94543433	A	A	94543433	3	1	9	1	0	0	0	0	1	0	0	0	34	623	22	2	5614	2	ABCA4	1	94543433	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	94543433	154707188	708	8859											
ABCA4	24	broad.mit.edu	37	chr1	94543454	94543454	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagggtatccttgggaagaAgaaatacagtcactgctctg	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94543454	C	C	94543454	1	2	9	0	1	0	0	0	0	0	0	0	34	87	3	5		5	ABCA4	1	94543454	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	21	94543454	154707167	709	8860											
ABCA4	24	broad.mit.edu	37	chr1	94544209	94544209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctggggccctacttcttcCcaggctttgaccaacttcct	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94544209	A	A	94544209	3	1	9	1	0	0	0	0	1	0	0	0	34	624	22	2	5692	2	ABCA4	1	94544209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	755	94544209	154706412	710	8861											
ABCA4	24	broad.mit.edu	37	chr1	94564355	94564355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacccctcccttaccacacGgaagagcttgaagaagtcca	7	14	0	3	rs116819096	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94564355	T	T	94564355	3	4	9	1	0	0	0	0	1	0	0	0	34	1116	39	1	6238	1	ABCA4	1	94564355	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20146	94564355	154686266	711	8862											
ABCA4	24	broad.mit.edu	37	chr1	94564457	94564457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcgcaccgtctttgcccCgcgtctctggctgaagatga	11	13	2	3	rs61748539		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94564457	A	A	94564457	3	1	9	1	0	0	0	0	1	0	0	0	34	652	23	1	6340	1	ABCA4	1	94564457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	94564457	154686164	712	8863											
ABCA4	24	broad.mit.edu	37	chr1	94568582	94568582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccctacctgctctggacGgacttgagagttgatcagaa	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94568582	T	T	94568582	3	4	9	1	0	0	0	0	1	0	0	0	34	1116	39	1	6446	1	ABCA4	1	94568582	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4125	94568582	154682039	713	8864											
ABCA4	24	broad.mit.edu	37	chr1	94568627	94568627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccactgagtcagacaggcCgatgtttttaatgagaaata	10	7	1	3	rs61748532	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94568627	A	A	94568627	3	1	9	1	0	0	0	0	1	0	0	0	34	652	23	1	6491	1	ABCA4	1	94568627	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	94568627	154681994	714	8865											
ABCA4	24	broad.mit.edu	37	chr1	94568724	94568724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaataagagaaagaacaGggtgttgaaggggaaatggg	16	1	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94568724	T	T	94568724	1	4	9	0	1	0	0	0	0	0	0	0	34	1015	35	2		2	ABCA4	1	94568724	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	97	94568724	154681897	715	8866											
ARHGAP29	9411	broad.mit.edu	37	chr1	94639425	94639425	+	Nonstop_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccctgaaatttgacatccCtacacaaattgtggaatttc	5	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94639425	A	A	94639425	4	1	9	1	0	0	0	0	0	0	0	0	880	692	24	2	3	2	ARHGAP29	1	94639425	Nonstop_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70701	94639425	154611196	716	8867											
ARHGAP29	9411	broad.mit.edu	37	chr1	94639839	94639839	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgcatatggcttactGggttgagtggcattgataga	14	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94639839	T	T	94639839	2	4	9	1	0	0	0	0	0	0	0	1	880	1335	47	2		2	ARHGAP29	1	94639839	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	414	94639839	154610782	717	8868											
ARHGAP29	9411	broad.mit.edu	37	chr1	94643639	94643639	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgataggagcagttgtGggccttggcctaatgagact	15	6	0	2	rs34014249		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94643639	T	T	94643639	2	4	9	1	0	0	0	0	0	0	0	1	880	1335	47	2		2	ARHGAP29	1	94643639	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3800	94643639	154606982	718	8869											
ARHGAP29	9411	broad.mit.edu	37	chr1	94649691	94649691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttaatggtgggtttcaaGggtaaaaatttttacctgcc	9	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94649691	T	T	94649691	1	4	9	0	1	0	0	0	0	0	0	0	880	1015	35	2		2	ARHGAP29	1	94649691	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6052	94649691	154600930	719	8870											
ARHGAP29	9411	broad.mit.edu	37	chr1	94649770	94649770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaattctgaaatatctacCaagtgcattccattttccaa	3	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94649770	A	A	94649770	3	1	9	1	0	0	0	0	1	0	0	0	880	593	21	2	1621	2	ARHGAP29	1	94649770	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	94649770	154600851	720	8871											
ARHGAP29	9411	broad.mit.edu	37	chr1	94668295	94668295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgcttcaagctacacCgaaaagagtattaaacacag	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94668295	A	A	94668295	1	1	9	0	1	0	0	0	0	0	0	0	880	667	23	1		1	ARHGAP29	1	94668295	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18525	94668295	154582326	721	8872											
ABCD3	5825	broad.mit.edu	37	chr1	94930410	94930410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctgaaaatcatggtccCtagaacattttgtaaagagg	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94930410	A	A	94930410	3	1	9	1	0	0	0	0	1	0	0	0	62	681	24	2	237	2	ABCD3	1	94930410	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	262115	94930410	154320211	722	8873											
ABCD3	5825	broad.mit.edu	37	chr1	94933551	94933551	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggatgattcaaaatgggaCactaattgaaaggtactttt	9	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94933551	T	T	94933551	3	4	9	1	0	0	0	0	1	0	0	0	62	478	17	4	337	4	ABCD3	1	94933551	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3141	94933551	154317070	723	8874											
ABCD3	5825	broad.mit.edu	37	chr1	94946085	94946085	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaactcgacttcgaagaccCattggtaagatgacaataac	7	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94946085	A	A	94946085	2	1	9	1	0	0	0	0	0	0	0	1	62	581	21	2		2	ABCD3	1	94946085	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12534	94946085	154304536	724	8875											
ABCD3	5825	broad.mit.edu	37	chr1	94955483	94955483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggagtacaagtcattcCcttgatacctggtgctggag	12	8	1	2	rs148848670		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94955483	A	A	94955483	3	1	9	1	0	0	0	0	1	0	0	0	62	623	22	2	1363	2	ABCD3	1	94955483	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9398	94955483	154295138	725	8876											
ABCD3	5825	broad.mit.edu	37	chr1	94964529	94964529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgacccttggaacacttcGagatcaagtgatatatccag	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94964529	T	T	94964529	3	4	9	1	0	0	0	0	1	0	0	0	62	1058	37	3	1664	3	ABCD3	1	94964529	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9046	94964529	154286092	726	8877											
F3	2152	broad.mit.edu	37	chr1	94998710	94998710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccttgccaaaaacatccCggaggcttaggaaagtgttg	11	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94998710	A	A	94998710	3	1	9	1	0	0	0	0	1	0	0	0	5390	652	23	1	372	1	F3	1	94998710	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34181	94998710	154251911	727	8878											
F3	2152	broad.mit.edu	37	chr1	94998816	94998816	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgaattgttggctgtcCgaggtttgctgaaacaaagg	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94998816	A	A	94998816	4	1	9	1	0	0	0	0	0	1	0	0	5390	661	23	1	478	1	F3	1	94998816	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	94998816	154251805	728	8879											
F3	2152	broad.mit.edu	37	chr1	95001588	95001588	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagaaccggtgctctcCacattccctgcagggtagga	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95001588	A	A	95001588	2	1	9	1	0	0	0	0	0	0	0	1	5390	581	21	2		2	F3	1	95001588	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2772	95001588	154249033	729	8880											
F3	2152	broad.mit.edu	37	chr1	95001616	95001616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagggtaggagaagaccCgtgccaagtacgtctgcttc	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95001616	A	A	95001616	3	1	9	1	0	0	0	0	1	0	0	0	5390	652	23	1	586	1	F3	1	95001616	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	95001616	154249005	730	8881											
F3	2152	broad.mit.edu	37	chr1	95001642	95001642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtacgtctgcttcacatcCttcacaatctcgtcggtgag	8	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95001642	A	A	95001642	3	1	9	1	0	0	0	0	1	0	0	0	5390	680	24	2	612	2	F3	1	95001642	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	95001642	154248979	731	8882											
F3	2152	broad.mit.edu	37	chr1	95005860	95005861	+	Frame_Shift_Del	DEL	CA	-	-													acgggtttgggttcccactcCaaaattgtcttgaaattagt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95005861	-	-	95005860	7	5	9	1	0	1	0	1	0	0	0	0	5390	593	21	0	742	0	F3	1	95005860	Frame_Shift_Del	DEL	CA	TCGA-05-4396-01A-21D-1855-08	4218	95005860	154244761	732	8883											
SLC44A3	126969	broad.mit.edu	37	chr1	95290147	95290147	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcaagaagaactccccCgtggaaggggcccctctttc	12	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95290147	A	A	95290147	2	1	9	1	0	0	0	0	0	0	0	1	14751	639	23	1		1	SLC44A3	1	95290147	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	284287	95290147	153960474	733	8884											
SLC44A3	126969	broad.mit.edu	37	chr1	95303387	95303387	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctaagtggaatcatgtcGggaagagatacaatccttgg	11	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95303387	T	T	95303387	2	4	9	1	0	0	0	0	0	0	0	1	14751	1103	39	1		1	SLC44A3	1	95303387	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13240	95303387	153947234	734	8885											
SLC44A3	126969	broad.mit.edu	37	chr1	95358113	95358113	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaattgcaatctccatgctCgcaatcttgaaagttttgta	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95358113	A	A	95358113	1	1	9	0	1	0	0	0	0	0	0	0	14751	899	31	3		3	SLC44A3	1	95358113	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54726	95358113	153892508	735	8886											
CNN3	1266	broad.mit.edu	37	chr1	95363504	95363504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatacttgccgcccaagccCatacacactcattcctttct	3	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95363504	A	A	95363504	3	1	9	1	0	0	0	0	1	0	0	0	3643	594	21	2	209	2	CNN3	1	95363504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5391	95363504	153887117	736	8887											
CNN3	1266	broad.mit.edu	37	chr1	95365028	95365028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaagatgcctcctagtccCgtaagctgtcatacctgcct	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95365028	A	A	95365028	3	1	9	1	0	0	0	0	1	0	0	0	3643	652	23	1	450	1	CNN3	1	95365028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1524	95365028	153885593	737	8888											
CNN3	1266	broad.mit.edu	37	chr1	95367712	95367712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagagtagtctgaacctGggtcatgtttccattctcaa	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95367712	T	T	95367712	3	4	9	1	0	0	0	0	1	0	0	0	3643	1357	47	2	656	2	CNN3	1	95367712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2684	95367712	153882909	738	8889											
CNN3	1266	broad.mit.edu	37	chr1	95369001	95369001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagcccagctggaagttgGggccaatgctcatgcctgtc	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95369001	T	T	95369001	3	4	9	1	0	0	0	0	1	0	0	0	3643	1232	43	2	876	2	CNN3	1	95369001	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1289	95369001	153881620	739	8890											
ALG14	199857	broad.mit.edu	37	chr1	95492779	95492779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggactgctgaacctccCggcttcttggaattcggtga	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95492779	A	A	95492779	3	1	9	1	0	0	0	0	1	0	0	0	516	652	23	1	332	1	ALG14	1	95492779	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123778	95492779	153757842	740	8891											
TMEM56	148534	broad.mit.edu	37	chr1	95639430	95639430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgcagagctttccagccCgtttgtgaatcagcggtatg	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95639430	A	A	95639430	3	1	9	1	0	0	0	0	1	0	0	0	16306	652	23	1	476	1	TMEM56	1	95639430	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146651	95639430	153611191	741	8892											
TMEM56	148534	broad.mit.edu	37	chr1	95657235	95657235	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattatggcttcatgtattcCgtgtatggaacagaacccta	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95657235	A	A	95657235	2	1	9	1	0	0	0	0	0	0	0	1	16306	639	23	1		1	TMEM56	1	95657235	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17805	95657235	153593386	742	8893											
TMEM56	148534	broad.mit.edu	37	chr1	95657253	95657253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtgtatggaacagaaccCtacataaggcttggagtttt	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95657253	A	A	95657253	2	1	9	1	0	0	0	0	0	0	0	1	16306	668	24	2		2	TMEM56	1	95657253	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	95657253	153593368	743	8894											
RWDD3	25950	broad.mit.edu	37	chr1	95709822	95709822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaggatttatggatgtGgatatacctctggaattggt	13	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95709822	T	T	95709822	2	4	9	1	0	0	0	0	0	0	0	1	13868	1335	47	2		2	RWDD3	1	95709822	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	52569	95709822	153540799	744	8895											
PTBP2	58155	broad.mit.edu	37	chr1	97216980	97216980	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatttgtttttgttttcataGagaggatctgacgaactact	8	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97216980	T	T	97216980	5	4	9	1	0	0	0	0	0	0	1	0	12832	956	33	3	49	3	PTBP2	1	97216980	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	1507158	97216980	152033641	745	8896											
PTBP2	58155	broad.mit.edu	37	chr1	97217024	97217024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagtgttctcagtagtcCgaactctaatatgagcagca	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97217024	A	A	97217024	3	1	9	1	0	0	0	0	1	0	0	0	12832	652	23	1	93	1	PTBP2	1	97217024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	97217024	152033597	746	8897											
PTBP2	58155	broad.mit.edu	37	chr1	97271977	97271977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctctccttctaaagatGgttacgccccaaagtctgtt	6	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97271977	T	T	97271977	3	4	9	1	0	0	0	0	1	0	0	0	12832	1348	47	2	1085	2	PTBP2	1	97271977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54953	97271977	151978644	747	8898											
DPYD	1806	broad.mit.edu	37	chr1	97564173	97564173	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgttccagataaggtcCaaaacttggcagtttctaaa	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97564173	A	A	97564173	4	1	9	1	0	0	0	0	0	1	0	0	4785	603	21	2	451	2	DPYD	1	97564173	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	292196	97564173	151686448	748	8899											
DPYD	1806	broad.mit.edu	37	chr1	97700551	97700551	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataggtctgattgctgtccCtacacaaaatcagaataatc	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97700551	A	A	97700551	5	1	9	1	0	0	0	0	0	0	1	0	4785	695	24	2	798	2	DPYD	1	97700551	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	136378	97700551	151550070	749	8900											
DPYD	1806	broad.mit.edu	37	chr1	97770802	97770802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcacaatgcaagaagtGggcaacacctaccagacact	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97770802	T	T	97770802	1	4	9	0	1	0	0	0	0	0	0	0	4785	1363	47	2		2	DPYD	1	97770802	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	70251	97770802	151479819	750	8901											
DPYD	1806	broad.mit.edu	37	chr1	97771666	97771666	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtaggaaaagacatacttGagtatggctacataatgtgg	11	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97771666	T	T	97771666	1	4	9	0	1	0	0	0	0	0	0	0	4785	1305	45	3		3	DPYD	1	97771666	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	864	97771666	151478955	751	8902											
DPYD	1806	broad.mit.edu	37	chr1	97771685	97771685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtatggctacataatgtGggccaatatttacaatagcg	10	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97771685	T	T	97771685	1	4	9	0	1	0	0	0	0	0	0	0	4785	1363	47	2		2	DPYD	1	97771685	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	97771685	151478936	752	8903											
DPYD	1806	broad.mit.edu	37	chr1	97771705	97771705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccaatatttacaatagcGggcaactgattcaagtcaag	10	8	2	1	rs55846082		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97771705	T	T	97771705	1	4	9	0	1	0	0	0	0	0	0	0	4785	1131	39	1		1	DPYD	1	97771705	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	97771705	151478916	753	8904											
DPYD	1806	broad.mit.edu	37	chr1	97981388	97981388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgctagcaagaccaaaaGgatttataaacttcaatccg	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97981388	T	T	97981388	3	4	9	1	0	0	0	0	1	0	0	0	4785	1000	35	2	1487	2	DPYD	1	97981388	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	209683	97981388	151269233	754	8905											
DPYD	1806	broad.mit.edu	37	chr1	98015216	98015216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaccacctgcaaataccCatgcttcactagtttgcata	4	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98015216	A	A	98015216	3	1	9	1	0	0	0	0	1	0	0	0	4785	595	21	2	1701	2	DPYD	1	98015216	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33828	98015216	151235405	755	8906											
DPYD	1806	broad.mit.edu	37	chr1	98058907	98058907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtacaatcacgactcccCgtatcgatggcaatggagag	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98058907	A	A	98058907	3	1	9	1	0	0	0	0	1	0	0	0	4785	652	23	1	2138	1	DPYD	1	98058907	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43691	98058907	151191714	756	8907											
DPYD	1806	broad.mit.edu	37	chr1	98060655	98060655	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtggcaaaaagtctttGgatgtataaaacccctggtc	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98060655	T	T	98060655	2	4	9	1	0	0	0	0	0	0	0	1	4785	1335	47	2		2	DPYD	1	98060655	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1748	98060655	151189966	757	8908											
DPYD	1806	broad.mit.edu	37	chr1	98293683	98293683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttacctcattgcttctcGgagagctcctcgctcaccaa	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98293683	T	T	98293683	2	4	9	1	0	0	0	0	0	0	0	1	4785	1124	39	1		1	DPYD	1	98293683	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	233028	98293683	150956938	758	8909											
SNX7	51375	broad.mit.edu	37	chr1	99204006	99204006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctcatttacttttggtcCgtccaatgttgaaagagtgt	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99204006	A	A	99204006	1	1	9	0	1	0	0	0	0	0	0	0	15021	667	23	1		1	SNX7	1	99204006	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	910323	99204006	150046615	759	8910											
LPPR4	9890	broad.mit.edu	37	chr1	99753706	99753706	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctggacctgcaattacGgtaagaattacccccaaaat	7	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99753706	T	T	99753706	2	4	9	1	0	0	0	0	0	0	0	1	9014	1130	39	1		1	LPPR4	1	99753706	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	549700	99753706	149496915	760	8911											
LPPR4	9890	broad.mit.edu	37	chr1	99762249	99762249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatacctgttggcttaataGgtattccaacatgcctcttc	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99762249	T	T	99762249	1	4	9	0	1	0	0	0	0	0	0	0	9014	1015	35	2		2	LPPR4	1	99762249	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8543	99762249	149488372	761	8912											
LPPR4	9890	broad.mit.edu	37	chr1	99767303	99767303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcaattccacattaacGgattcctctaagcttctgaa	4	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99767303	T	T	99767303	2	4	9	1	0	0	0	0	0	0	0	1	9014	1103	39	1		1	LPPR4	1	99767303	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5054	99767303	149483318	762	8913											
LPPR4	9890	broad.mit.edu	37	chr1	99771171	99771171	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctatgtatgtacttcagtGggtactctaaggaaacccta	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771171	T	T	99771171	1	4	9	0	1	0	0	0	0	0	0	0	9014	1363	47	2		2	LPPR4	1	99771171	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3868	99771171	149479450	763	8914											
LPPR4	9890	broad.mit.edu	37	chr1	99771804	99771804	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagcctggcgctgtcccCggatgtaacaacagcatgcc	10	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771804	A	A	99771804	2	1	9	1	0	0	0	0	0	0	0	1	9014	639	23	1		1	LPPR4	1	99771804	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	633	99771804	149478817	764	8915											
LPPR4	9890	broad.mit.edu	37	chr1	99771853	99771853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagtgtccattcagtccCgtcctgggtcctcacagttg	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771853	A	A	99771853	3	1	9	1	0	0	0	0	1	0	0	0	9014	652	23	1	1605	1	LPPR4	1	99771853	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	99771853	149478768	765	8916											
LPPR4	9890	broad.mit.edu	37	chr1	99772550	99772550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggaacctcccccacacGggcttataaggattgagtga	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99772550	T	T	99772550	3	4	9	1	0	0	0	0	1	0	0	0	9014	1116	39	1	2302	1	LPPR4	1	99772550	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	697	99772550	149478071	766	8917											
PALMD	54873	broad.mit.edu	37	chr1	100127903	100127903	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaatacaggaagaaatctCacagaagcgtctgaaaatag	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100127903	A	A	100127903	4	1	9	1	0	0	0	0	0	1	0	0	11505	838	29	3	80	3	PALMD	1	100127903	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	355353	100127903	149122718	767	8918											
PALMD	54873	broad.mit.edu	37	chr1	100133211	100133211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcagaaaaaggccttgaGggagaaatggcttctagatg	12	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100133211	T	T	100133211	3	4	9	1	0	0	0	0	1	0	0	0	11505	1000	35	2	150	2	PALMD	1	100133211	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5308	100133211	149117410	768	8919											
PALMD	54873	broad.mit.edu	37	chr1	100152359	100152359	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttataagagtgagcattaacCaattttaaaactgtaattct	5	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100152359	A	A	100152359	1	1	9	0	1	0	0	0	0	0	0	0	11505	609	21	2		2	PALMD	1	100152359	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19148	100152359	149098262	769	8920											
PALMD	54873	broad.mit.edu	37	chr1	100152395	100152395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctctctcaaaatgaatcCacaaatactatataattttt	1	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100152395	A	A	100152395	1	1	9	0	1	0	0	0	0	0	0	0	11505	609	21	2		2	PALMD	1	100152395	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	100152395	149098226	770	8921											
PALMD	54873	broad.mit.edu	37	chr1	100154804	100154804	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgccagtgcctcatcccCgatcagtgattcaacaagca	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100154804	A	A	100154804	2	1	9	1	0	0	0	0	0	0	0	1	11505	644	23	1		1	PALMD	1	100154804	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2409	100154804	149095817	771	8922											
FRRS1	391059	broad.mit.edu	37	chr1	100183025	100183025	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaactggcttgaagaaccGggcaaccagtacacctatgc	9	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100183025	T	T	100183025	2	4	9	1	0	0	0	0	0	0	0	1	6120	1115	39	1		1	FRRS1	1	100183025	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28221	100183025	149067596	772	8923											
FRRS1	391059	broad.mit.edu	37	chr1	100203711	100203711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgctcatttcaaccatcacCgattggtcatctcttgtgaa	6	13	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100203711	A	A	100203711	2	1	9	1	0	0	0	0	0	0	0	1	6120	639	23	1		1	FRRS1	1	100203711	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20686	100203711	149046910	773	8924											
FRRS1	391059	broad.mit.edu	37	chr1	100203806	100203806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacagaacttcttgttccCacaatctgaggcactgaact	6	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100203806	A	A	100203806	3	1	9	1	0	0	0	0	1	0	0	0	6120	594	21	2	1329	2	FRRS1	1	100203806	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	100203806	149046815	774	8925											
FRRS1	391059	broad.mit.edu	37	chr1	100206370	100206370	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttggttaagtgggaaacGggaggtaacgttggcaaagg	18	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100206370	T	T	100206370	2	4	9	1	0	0	0	0	0	0	0	1	6120	1103	39	1		1	FRRS1	1	100206370	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2564	100206370	149044251	775	8926											
FRRS1	391059	broad.mit.edu	37	chr1	100212975	100212975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcctttaaatggatgccCtgacaaagtaactgagaaaa	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100212975	A	A	100212975	3	1	9	1	0	0	0	0	1	0	0	0	6120	681	24	2	1728	2	FRRS1	1	100212975	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6605	100212975	149037646	776	8927											
AGL	178	broad.mit.edu	37	chr1	100327111	100327111	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagggaaaagcagttacCgtgtatacaaattacccatt	7	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100327111	A	A	100327111	2	1	9	1	0	0	0	0	0	0	0	1	384	639	23	1		1	AGL	1	100327111	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	114136	100327111	148923510	777	8928											
AGL	178	broad.mit.edu	37	chr1	100327852	100327852	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttacatagttgtggacccCattttacgtgttggtgctga	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100327852	A	A	100327852	2	1	9	1	0	0	0	0	0	0	0	1	384	581	21	2		2	AGL	1	100327852	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	741	100327852	148922769	778	8929											
AGL	178	broad.mit.edu	37	chr1	100327865	100327865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaccccattttacgtgttGgtgctgataatcatgtgcta	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100327865	T	T	100327865	3	4	9	1	0	0	0	0	1	0	0	0	384	1348	47	2	425	2	AGL	1	100327865	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	100327865	148922756	779	8930											
AGL	178	broad.mit.edu	37	chr1	100330004	100330004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctaggtcatgctactccCttgccaatcagttagaatta	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100330004	A	A	100330004	3	1	9	1	0	0	0	0	1	0	0	0	384	681	24	2	606	2	AGL	1	100330004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2139	100330004	148920617	780	8931											
AGL	178	broad.mit.edu	37	chr1	100346235	100346235	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagggcagattagtttacCgatatggaggagaacctgtt	13	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100346235	A	A	100346235	2	1	9	1	0	0	0	0	0	0	0	1	384	644	23	1		1	AGL	1	100346235	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16231	100346235	148904386	781	8932											
AGL	178	broad.mit.edu	37	chr1	100346261	100346261	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagaacctgttggatcCtttgttcagccctgtttgag	13	8	1	2	rs111918608		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100346261	A	A	100346261	2	1	9	1	0	0	0	0	0	0	0	1	384	668	24	2		2	AGL	1	100346261	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	100346261	148904360	782	8933											
AGL	178	broad.mit.edu	37	chr1	100347201	100347201	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactgctttcaggaatccCaagacttcattttacagcaa	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100347201	A	A	100347201	2	1	9	1	0	0	0	0	0	0	0	1	384	581	21	2		2	AGL	1	100347201	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	940	100347201	148903420	783	8934											
AGL	178	broad.mit.edu	37	chr1	100356937	100356937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagagctatattatcgtccCaaaaaatcaaggacataata	6	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100356937	A	A	100356937	1	1	9	0	1	0	0	0	0	0	0	0	384	609	21	2		2	AGL	1	100356937	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9736	100356937	148893684	784	8935											
AGL	178	broad.mit.edu	37	chr1	100366213	100366213	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattattttagcatttgcGggtaccctgaggcatggtct	10	7	1	1	rs149393587	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100366213	T	T	100366213	2	4	9	1	0	0	0	0	0	0	0	1	384	1103	39	1		1	AGL	1	100366213	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9276	100366213	148884408	785	8936											
AGL	178	broad.mit.edu	37	chr1	100366249	100366249	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcattcctaatctactGggtgaaggaatttatgccag	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100366249	T	T	100366249	2	4	9	1	0	0	0	0	0	0	0	1	384	1335	47	2		2	AGL	1	100366249	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	100366249	148884372	786	8937											
AGL	178	broad.mit.edu	37	chr1	100366281	100366281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgccagatacaattgtcGggatgctgtgtggtggtggc	15	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100366281	T	T	100366281	3	4	9	1	0	0	0	0	1	0	0	0	384	1116	39	1	3619	1	AGL	1	100366281	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	100366281	148884340	787	8938											
AGL	178	broad.mit.edu	37	chr1	100368302	100368302	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgcagggcatacagttcCgagaaaggaatgctggtccc	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100368302	A	A	100368302	2	1	9	1	0	0	0	0	0	0	0	1	384	644	23	1		1	AGL	1	100368302	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2021	100368302	148882319	788	8939											
AGL	178	broad.mit.edu	37	chr1	100368323	100368323	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaggaatgctggtcccCagatagatcgaaacatgaag	12	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100368323	A	A	100368323	3	1	9	1	0	0	0	0	1	0	0	0	384	595	21	2	3844	2	AGL	1	100368323	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	100368323	148882298	789	8940											
AGL	178	broad.mit.edu	37	chr1	100379248	100379248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatggagcttcaagtccttGgtgtgactatcagctcaggc	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100379248	T	T	100379248	3	4	9	1	0	0	0	0	1	0	0	0	384	1357	47	2	4298	2	AGL	1	100379248	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10925	100379248	148871373	790	8941											
SLC35A3	23443	broad.mit.edu	37	chr1	100472677	100472677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtataccagtggctgtccCtagtaattttgatgacagga	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100472677	A	A	100472677	3	1	9	1	0	0	0	0	1	0	0	0	14686	680	24	2	440	2	SLC35A3	1	100472677	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93429	100472677	148777944	791	8942											
HIAT1	64645	broad.mit.edu	37	chr1	100524241	100524241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtattacatgaaacctttcCtaaacatacatttctgatga	5	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100524241	A	A	100524241	3	1	9	1	0	0	0	0	1	0	0	0	7164	681	24	2	210	2	HIAT1	1	100524241	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51564	100524241	148726380	792	8943											
HIAT1	64645	broad.mit.edu	37	chr1	100525403	100525403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcatgctcatagatgtgtGgtattcatttttttcattta	7	5	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100525403	T	T	100525403	1	4	9	0	1	0	0	0	0	0	0	0	7164	1363	47	2		2	HIAT1	1	100525403	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1162	100525403	148725218	793	8944											
HIAT1	64645	broad.mit.edu	37	chr1	100525433	100525433	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcatttaatttttttaGggtttgttgtcattccttag	6	4	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100525433	T	T	100525433	5	4	9	1	0	0	0	0	0	0	1	0	7164	1014	35	2	257	2	HIAT1	1	100525433	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	100525433	148725188	794	8945											
HIAT1	64645	broad.mit.edu	37	chr1	100525486	100525486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgctctttctgatgtttGgggccgaaaatccttcttgc	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100525486	T	T	100525486	3	4	9	1	0	0	0	0	1	0	0	0	7164	1357	47	2	310	2	HIAT1	1	100525486	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	100525486	148725135	795	8946											
HIAT1	64645	broad.mit.edu	37	chr1	100525514	100525514	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatccttcttgctgctaacGgtgtttttcacatgtgcccc	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100525514	T	T	100525514	2	4	9	1	0	0	0	0	0	0	0	1	7164	1103	39	1		1	HIAT1	1	100525514	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	100525514	148725107	796	8947											
HIAT1	64645	broad.mit.edu	37	chr1	100534151	100534151	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctcagacaggtaaaatcCtcttccactaaggtggactt	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100534151	A	A	100534151	1	1	9	0	1	0	0	0	0	0	0	0	7164	696	24	2		2	HIAT1	1	100534151	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8637	100534151	148716470	797	8948											
SASS6	163786	broad.mit.edu	37	chr1	100591403	100591403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaattgtctacaatgtacCgaaatgatatttcaaaaaag	5	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100591403	A	A	100591403	1	1	9	0	1	0	0	0	0	0	0	0	13962	667	23	1		1	SASS6	1	100591403	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57252	100591403	148659218	798	8949											
SASS6	163786	broad.mit.edu	37	chr1	100598339	100598339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgcatttcacctgcaacGggactagttggtggaacagc	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100598339	T	T	100598339	3	4	9	1	0	0	0	0	1	0	0	0	13962	1116	39	1	2009	1	SASS6	1	100598339	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6936	100598339	148652282	799	8950											
SASS6	163786	broad.mit.edu	37	chr1	100598407	100598407	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggtgtgcagaaaagccCaacaggcccggccctcggga	15	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100598407	A	A	100598407	1	1	9	0	1	0	0	0	0	0	0	0	13962	609	21	2		2	SASS6	1	100598407	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	100598407	148652214	800	8951											
CCDC76	54482	broad.mit.edu	37	chr1	100602451	100602451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattaggaagaagatgctcGgaaaagaatcctgtgtcctt	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100602451	T	T	100602451	3	4	9	1	0	0	0	0	1	0	0	0	2878	1116	39	1	167	1	CCDC76	1	100602451	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4044	100602451	148648170	801	8952											
LRRC39	127495	broad.mit.edu	37	chr1	100617952	100617952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttatacctgctcttctcCgtgactcttgtatgtatgtg	7	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100617952	A	A	100617952	3	1	9	1	0	0	0	0	1	0	0	0	9082	652	23	1	74	1	LRRC39	1	100617952	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15501	100617952	148632669	802	8953											
LRRC39	127495	broad.mit.edu	37	chr1	100618000	100618000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaaggccaaataattccCgttcctcttcttcatctgtg	6	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100618000	A	A	100618000	3	1	9	1	0	0	0	0	1	0	0	0	9082	652	23	1	122	1	LRRC39	1	100618000	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	100618000	148632621	803	8954											
DBT	1629	broad.mit.edu	37	chr1	100672084	100672084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcccaatttctggaggcGgttcagttcagtggcgatgt	14	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100672084	T	T	100672084	3	4	9	1	0	0	0	0	1	0	0	0	4291	1116	39	1	334	1	DBT	1	100672084	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54084	100672084	148578537	804	8955			4	7	39117670	4	4	94	N	G_C	2.446073e-05
DBT	1629	broad.mit.edu	37	chr1	100672140	100672140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaacatttttcacattaGggacaatcaaaccctgctca	5	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100672140	T	T	100672140	3	4	9	1	0	0	0	0	1	0	0	0	4291	1000	35	2	390	2	DBT	1	100672140	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	100672140	148578481	805	8956			4	7	39117670	4	4	94	N	G_C	2.446073e-05
DBT	1629	broad.mit.edu	37	chr1	100672154	100672154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattagggacaatcaaaccCtgctcagtatccattgctat	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100672154	A	A	100672154	3	1	9	1	0	0	0	0	1	0	0	0	4291	680	24	2	404	2	DBT	1	100672154	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	100672154	148578467	806	8957			4	7	39117670	4	4	94	N	G_C	2.446073e-05
DBT	1629	broad.mit.edu	37	chr1	100672177	100672177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtatccattgctatccCaatgttatgagaagcctaaa	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100672177	A	A	100672177	3	1	9	1	0	0	0	0	1	0	0	0	4291	594	21	2	427	2	DBT	1	100672177	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	100672177	148578444	807	8958			4	7	39117670	4	4	94	N	G_C	2.446073e-05
DBT	1629	broad.mit.edu	37	chr1	100684236	100684236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgccagtgtttttcggccCtttatctcttggtgtgtatg	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100684236	A	A	100684236	3	1	9	1	0	0	0	0	1	0	0	0	4291	680	24	2	975	2	DBT	1	100684236	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12059	100684236	148566385	808	8959											
DBT	1629	broad.mit.edu	37	chr1	100706343	100706343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttcaggaagtgatgtGgatgactatacttgaatgaa	11	3	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100706343	T	T	100706343	3	4	9	1	0	0	0	0	1	0	0	0	4291	1348	47	2	1339	2	DBT	1	100706343	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22107	100706343	148544278	809	8960											
RTCD1	8634	broad.mit.edu	37	chr1	100733654	100733654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatttgtcataaaatgtGgggatgtaggcagtctgaat	11	3	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100733654	T	T	100733654	1	4	9	0	1	0	0	0	0	0	0	0	13829	1363	47	2		2	RTCD1	1	100733654	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27311	100733654	148516967	810	8961											
RTCD1	8634	broad.mit.edu	37	chr1	100740445	100740445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagttaaacaattgaaccCtataaatttaactgagcgtg	6	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100740445	A	A	100740445	3	1	9	1	0	0	0	0	1	0	0	0	13829	681	24	2	604	2	RTCD1	1	100740445	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6791	100740445	148510176	811	8962											
CDC14A	8556	broad.mit.edu	37	chr1	100933520	100933520	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcttacagctggtcttGgaagaacagggacattgata	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100933520	T	T	100933520	4	4	9	1	0	0	0	0	0	1	0	0	3086	1349	47	2	885	2	CDC14A	1	100933520	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	193075	100933520	148317101	812	8963											
CDC14A	8556	broad.mit.edu	37	chr1	100933543	100933543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacagggacattgatagcCtgttatgtaatgaaacacta	9	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100933543	A	A	100933543	2	1	9	1	0	0	0	0	0	0	0	1	3086	668	24	2		2	CDC14A	1	100933543	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	100933543	148317078	813	8964											
CDC14A	8556	broad.mit.edu	37	chr1	100961605	100961605	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtgtcccagcctttcaGgtactgccaatgaggttgaa	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100961605	T	T	100961605	3	4	9	1	0	0	0	0	1	0	0	0	3086	1014	35	2	1363	2	CDC14A	1	100961605	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28062	100961605	148289016	814	8965											
CDC14A	8556	broad.mit.edu	37	chr1	100963713	100963713	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgtccccttcagcaacGgccaagaggatcaacagaac	9	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100963713	T	T	100963713	2	4	9	1	0	0	0	0	0	0	0	1	3086	1103	39	1		1	CDC14A	1	100963713	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2108	100963713	148286908	815	8966											
CDC14A	8556	broad.mit.edu	37	chr1	100963779	100963779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggtaatttttctctccCtcttctaaggtgctggtttg	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100963779	A	A	100963779	1	1	9	0	1	0	0	0	0	0	0	0	3086	696	24	2		2	CDC14A	1	100963779	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	100963779	148286842	816	8967											
CDC14A	8556	broad.mit.edu	37	chr1	100964774	100964774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccgaccctcctacaccGggctttcttcttcttcagcg	6	18	4	0	rs61752469	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100964774	T	T	100964774	3	4	9	1	0	0	0	0	1	0	0	0	3086	1116	39	1	1784	1	CDC14A	1	100964774	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	995	100964774	148285847	817	8968											
CDC14A	8556	broad.mit.edu	37	chr1	100983731	100983731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagctgtcttgtgtggaaGggagaagctgcatgacttgc	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100983731	T	T	100983731	1	4	9	0	1	0	0	0	0	0	0	0	3086	1015	35	2		2	CDC14A	1	100983731	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18957	100983731	148266890	818	8969											
VCAM1	7412	broad.mit.edu	37	chr1	101188666	101188666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagttgctgatgtataccCatttgacaggctggagatag	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101188666	A	A	101188666	3	1	9	1	0	0	0	0	1	0	0	0	17264	594	21	2	441	2	VCAM1	1	101188666	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	204935	101188666	148061955	819	8970											
VCAM1	7412	broad.mit.edu	37	chr1	101197993	101197993	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcccccagagatacaacCgtcttggtcagcccttcctc	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101197993	A	A	101197993	2	1	9	1	0	0	0	0	0	0	0	1	17264	639	23	1		1	VCAM1	1	101197993	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9327	101197993	148052628	820	8971											
VCAM1	7412	broad.mit.edu	37	chr1	101198100	101198100	+	Missense_Mutation	SNP	C	A	A													cctgtggagcaggcagctccCtaacggggagctacagcctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101198100	A	A	101198100	3	1	9	1	0	0	0	0	1	0	0	0	17264	681	24	2	1678	2	VCAM1	1	101198100	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107	101198100	148052521	821	8972	36	2									
VCAM1	7412	broad.mit.edu	37	chr1	101198105	101198105	+	Missense_Mutation	SNP	G	T	T													ggagcaggcagctccctaacGgggagctacagcctctttct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101198105	T	T	101198105	3	4	9	1	0	0	0	0	1	0	0	0	17264	1116	39	1	1683	1	VCAM1	1	101198105	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5	101198105	148052516	822	8973	36	2									
VCAM1	7412	broad.mit.edu	37	chr1	101203711	101203711	+	Nonsense_Mutation	SNP	G	T	T													acaaagactatttttctcctGagcttctcgtgctctatttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101203711	T	T	101203711	4	4	9	1	0	0	0	0	0	1	0	0	17264	1291	45	3	2126	3	VCAM1	1	101203711	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5606	101203711	148046910	823	8974	37	2									
VCAM1	7412	broad.mit.edu	37	chr1	101203719	101203719	+	Silent	SNP	C	A	A													tatttttctcctgagcttctCgtgctctattttgcatcctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101203719	A	A	101203719	2	1	9	1	0	0	0	0	0	0	0	1	17264	871	31	3		3	VCAM1	1	101203719	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	101203719	148046902	824	8975	37	2									
EXTL2	2135	broad.mit.edu	37	chr1	101339567	101339567	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgttggagtatcttaaGggcatgctatcatagatatt	9	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101339567	T	T	101339567	2	4	9	1	0	0	0	0	0	0	0	1	5369	987	35	2		2	EXTL2	1	101339567	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	135848	101339567	147911054	825	8976											
EXTL2	2135	broad.mit.edu	37	chr1	101342383	101342383	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcaaaaacaaggtctggGgtgctgatgagtgtgtcatc	13	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101342383	T	T	101342383	2	4	9	1	0	0	0	0	0	0	0	1	5369	1219	43	2		2	EXTL2	1	101342383	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2816	101342383	147908238	826	8977											
SLC30A7	148867	broad.mit.edu	37	chr1	101377692	101377692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagcccctccagatgtcCaccatgagagactgcttctt	7	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101377692	A	A	101377692	3	1	9	1	0	0	0	0	1	0	0	0	14674	594	21	2	427	2	SLC30A7	1	101377692	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35309	101377692	147872929	827	8978											
SLC30A7	148867	broad.mit.edu	37	chr1	101377725	101377725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcttgtttccattcttGggtttgtggtaaacctaata	8	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101377725	T	T	101377725	3	4	9	1	0	0	0	0	1	0	0	0	14674	1348	47	2	460	2	SLC30A7	1	101377725	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33	101377725	147872896	828	8979											
SLC30A7	148867	broad.mit.edu	37	chr1	101427373	101427373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaataaattgttgtcttcCttttccttagtgttattcct	4	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101427373	A	A	101427373	1	1	9	0	1	0	0	0	0	0	0	0	14674	696	24	2		2	SLC30A7	1	101427373	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49648	101427373	147823248	829	8980											
SLC30A7	148867	broad.mit.edu	37	chr1	101431276	101431276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataataacttaagtaaaagGgagtgcttaacttgattatg	8	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101431276	T	T	101431276	1	4	9	0	1	0	0	0	0	0	0	0	14674	1247	43	2		2	SLC30A7	1	101431276	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3903	101431276	147819345	830	8981											
SLC30A7	148867	broad.mit.edu	37	chr1	101431369	101431369	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtttacaggaacagcacttCtggactttatgttctgacgt	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101431369	A	A	101431369	3	1	9	1	0	0	0	0	1	0	0	0	14674	912	32	3	1016	3	SLC30A7	1	101431369	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	101431369	147819252	831	8982											
SLC30A7	148867	broad.mit.edu	37	chr1	101431422	101431422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaattaatagtagcacCtgatgctgatgctaggtgga	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101431422	A	A	101431422	3	1	9	1	0	0	0	0	1	0	0	0	14674	681	24	2	1069	2	SLC30A7	1	101431422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	101431422	147819199	832	8983											
DPH5	51611	broad.mit.edu	37	chr1	101458297	101458297	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcatagatcttccttcccCtataggcagaaaactagatg	7	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101458297	A	A	101458297	5	1	9	1	0	0	0	0	0	0	1	0	4763	695	24	2	335	2	DPH5	1	101458297	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	26875	101458297	147792324	833	8984											
DPH5	51611	broad.mit.edu	37	chr1	101479375	101479375	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcactgtgtgttgtggccCtgtagtgagaaaagattaga	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101479375	A	A	101479375	5	1	9	1	0	0	0	0	0	0	1	0	4763	695	24	2	617	2	DPH5	1	101479375	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	21078	101479375	147771246	834	8985											
S1PR1	1901	broad.mit.edu	37	chr1	101704636	101704636	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccggcattacaactacacGggaaagctgaatatcagcgc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101704636	T	T	101704636	2	4	9	1	0	0	0	0	0	0	0	1	13904	1103	39	1		1	S1PR1	1	101704636	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	225261	101704636	147545985	835	8986											
S1PR1	1901	broad.mit.edu	37	chr1	101704882	101704882	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacctacaagctcactccCgcccagtggtttctgcggga	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101704882	A	A	101704882	2	1	9	1	0	0	0	0	0	0	0	1	13904	639	23	1		1	S1PR1	1	101704882	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	246	101704882	147545739	836	8987											
S1PR1	1901	broad.mit.edu	37	chr1	101705000	101705000	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaatgaaactccacaacGggagcaataacttccgcctc	7	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101705000	T	T	101705000	3	4	9	1	0	0	0	0	1	0	0	0	13904	1116	39	1	462	1	S1PR1	1	101705000	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	118	101705000	147545621	837	8988											
S1PR1	1901	broad.mit.edu	37	chr1	101705419	101705419	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacatcctcttcagagcGgagtacttcctggtgttagc	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101705419	T	T	101705419	2	4	9	1	0	0	0	0	0	0	0	1	13904	1103	39	1		1	S1PR1	1	101705419	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	419	101705419	147545202	838	8989											
S1PR1	1901	broad.mit.edu	37	chr1	101705569	101705569	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggcaaattcaagcgaccCatcatcgccggcatggaatt	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101705569	A	A	101705569	2	1	9	1	0	0	0	0	0	0	0	1	13904	581	21	2		2	S1PR1	1	101705569	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	150	101705569	147545052	839	8990											
OLFM3	118427	broad.mit.edu	37	chr1	102270027	102270027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggtgacatacagtgtccCacagatcatgaaagattccc	9	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102270027	A	A	102270027	3	1	9	1	0	0	0	0	1	0	0	0	10949	594	21	2	236	2	OLFM3	1	102270027	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	564458	102270027	146980594	840	8991											
OLFM3	118427	broad.mit.edu	37	chr1	102290760	102290760	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgtactgttccagcacGgggatcaaaggcaggagctc	13	9	1	0	rs138105539		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102290760	T	T	102290760	2	4	9	1	0	0	0	0	0	0	0	1	10949	1103	39	1		1	OLFM3	1	102290760	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20733	102290760	146959861	841	8992											
OLFM3	118427	broad.mit.edu	37	chr1	102302475	102302475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcctgcttttggcatccCgggaacacaggttttgttct	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102302475	A	A	102302475	3	1	9	1	0	0	0	0	1	0	0	0	10949	652	23	1	1220	1	OLFM3	1	102302475	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11715	102302475	146948146	842	8993											
COL11A1	1301	broad.mit.edu	37	chr1	103352363	103352363	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgtattatttacatacCatctgggaagtcaggatggc	10	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103352363	A	A	103352363	3	1	9	1	0	0	0	0	1	0	0	0	3699	608	21	2	582	2	COL11A1	1	103352363	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1049888	103352363	145898258	843	8994											
COL11A1	1301	broad.mit.edu	37	chr1	103352408	103352408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaggtctttacaagttcGggctggattggtctgagtac	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103352408	T	T	103352408	2	4	9	1	0	0	0	0	0	0	0	1	3699	1124	39	1		1	COL11A1	1	103352408	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	103352408	145898213	844	8995											
COL11A1	1301	broad.mit.edu	37	chr1	103354432	103354432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtacttactggtaaacctGgaggaccaggtggacctaag	12	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103354432	T	T	103354432	3	4	9	1	0	0	0	0	1	0	0	0	3699	1348	47	2	944	2	COL11A1	1	103354432	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2024	103354432	145896189	845	8996											
COL11A1	1301	broad.mit.edu	37	chr1	103379220	103379220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggatctccatcttcaccCttgtcaccaccaacaccatc	3	19	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103379220	A	A	103379220	3	1	9	1	0	0	0	0	1	0	0	0	3699	680	24	2	1475	2	COL11A1	1	103379220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24788	103379220	145871401	846	8997											
COL11A1	1301	broad.mit.edu	37	chr1	103379284	103379284	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatgaagcaagatatatctCagtatcaataaatcacacta	4	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103379284	A	A	103379284	1	1	9	0	1	0	0	0	0	0	0	0	3699	841	29	3		3	COL11A1	1	103379284	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	103379284	145871337	847	8998											
COL11A1	1301	broad.mit.edu	37	chr1	103404581	103404581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctctcagtaagaagtaGgaaactcacattttctccct	6	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103404581	T	T	103404581	1	4	9	0	1	0	0	0	0	0	0	0	3699	1015	35	2		2	COL11A1	1	103404581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25297	103404581	145846040	848	8999											
COL11A1	1301	broad.mit.edu	37	chr1	103430982	103430982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagattttacacaacttaGgaaggttaaaatgtaaacaa	7	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103430982	T	T	103430982	1	4	9	0	1	0	0	0	0	0	0	0	3699	1015	35	2		2	COL11A1	1	103430982	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26401	103430982	145819639	849	9000											
COL11A1	1301	broad.mit.edu	37	chr1	103444353	103444353	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcagtttgaattctttctCatagcatctgcctggaaaaa	6	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103444353	A	A	103444353	1	1	9	0	1	0	0	0	0	0	0	0	3699	841	29	3		3	COL11A1	1	103444353	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13371	103444353	145806268	850	9001											
COL11A1	1301	broad.mit.edu	37	chr1	103462591	103462591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattaaggcattttctcttGgaaatttattaataggacat	6	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103462591	T	T	103462591	1	4	9	0	1	0	0	0	0	0	0	0	3699	1363	47	2		2	COL11A1	1	103462591	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18238	103462591	145788030	851	9002											
COL11A1	1301	broad.mit.edu	37	chr1	103462606	103462606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttggaaatttattaataGgacatttaaatggatacttt	6	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103462606	T	T	103462606	1	4	9	0	1	0	0	0	0	0	0	0	3699	1015	35	2		2	COL11A1	1	103462606	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	103462606	145788015	852	9003											
COL11A1	1301	broad.mit.edu	37	chr1	103462618	103462618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaataggacatttaaatGgatactttggaacctaccag	7	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103462618	T	T	103462618	1	4	9	0	1	0	0	0	0	0	0	0	3699	1363	47	2		2	COL11A1	1	103462618	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	103462618	145788003	853	9004											
COL11A1	1301	broad.mit.edu	37	chr1	103471421	103471421	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgtcacctggcagaccCggaagtccatcaaaccctcg	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103471421	A	A	103471421	2	1	9	1	0	0	0	0	0	0	0	1	3699	639	23	1		1	COL11A1	1	103471421	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8803	103471421	145779200	854	9005											
COL11A1	1301	broad.mit.edu	37	chr1	103483430	103483430	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtagacctggaggaccCataataccctatagagaaac	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103483430	G	G	103483430	3	3	9	1	0	0	0	0	1	0	0	0	3699	594	21	4	4289	4	COL11A1	1	103483430	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12009	103483430	145767191	855	9006											
COL11A1	1301	broad.mit.edu	37	chr1	103491243	103491243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaaatcatgatttaattGggttatagtattagccaagt	9	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103491243	T	T	103491243	1	4	9	0	1	0	0	0	0	0	0	0	3699	1363	47	2		2	COL11A1	1	103491243	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7813	103491243	145759378	856	9007											
COL11A1	1301	broad.mit.edu	37	chr1	103491407	103491407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataacttttcttcttcttGgatgaaaatttttcagattt	5	5	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103491407	T	T	103491407	1	4	9	0	1	0	0	0	0	0	0	0	3699	1335	47	2		2	COL11A1	1	103491407	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	164	103491407	145759214	857	9008											
COL11A1	1301	broad.mit.edu	37	chr1	103491428	103491428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaaatttttcagatttGgggggtgtaaactttttgga	12	2	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103491428	T	T	103491428	1	4	9	0	1	0	0	0	0	0	0	0	3699	1335	47	2		2	COL11A1	1	103491428	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	103491428	145759193	858	9009											
COL11A1	1301	broad.mit.edu	37	chr1	103491775	103491775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgctttgtttttacctcCgtctgtgctattgtctcctc	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103491775	A	A	103491775	2	1	9	1	0	0	0	0	0	0	0	1	3699	639	23	1		1	COL11A1	1	103491775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	347	103491775	145758846	859	9010											
COL11A1	1301	broad.mit.edu	37	chr1	103544218	103544218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattttgttacttacttccCgtcagcgatgttaacagttc	6	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103544218	A	A	103544218	3	1	9	1	0	0	0	0	1	0	0	0	3699	652	23	1	5353	1	COL11A1	1	103544218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52443	103544218	145706403	860	9011											
COL11A1	1301	broad.mit.edu	37	chr1	103548363	103548363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataataaagtgaatatacctGgaaataactgttttgttggg	9	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103548363	T	T	103548363	3	4	9	1	0	0	0	0	1	0	0	0	3699	1348	47	2	5569	2	COL11A1	1	103548363	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4145	103548363	145702258	861	9012											
COL11A1	1301	broad.mit.edu	37	chr1	103548381	103548381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaataactgttttgttGgggcactgagttgtgcttgc	13	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103548381	T	T	103548381	3	4	9	1	0	0	0	0	1	0	0	0	3699	1348	47	2	5587	2	COL11A1	1	103548381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18	103548381	145702240	862	9013											
COL11A1	1301	broad.mit.edu	37	chr1	103548461	103548461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtttgtgcaaaatccCgttgtttttgatattccctc	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103548461	A	A	103548461	2	1	9	1	0	0	0	0	0	0	0	1	3699	639	23	1		1	COL11A1	1	103548461	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	103548461	145702160	863	9014											
COL11A1	1301	broad.mit.edu	37	chr1	103573681	103573681	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgcgagggttgttacGgtgaaatcccagagccaccg	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103573681	T	T	103573681	2	4	9	1	0	0	0	0	0	0	0	1	3699	1103	39	1		1	COL11A1	1	103573681	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25220	103573681	145676940	864	9015											
AMY2B	280	broad.mit.edu	37	chr1	104114769	104114769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgttgcaattcacaaccCtttcagaccttggtgggaaa	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104114769	A	A	104114769	3	1	9	1	0	0	0	0	1	0	0	0	595	681	24	2	212	2	AMY2B	1	104114769	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	541088	104114769	145135852	865	9016											
AMY2B	280	broad.mit.edu	37	chr1	104115802	104115802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggactttccagcagtcCcatattctggatgggatttt	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104115802	A	A	104115802	3	1	9	1	0	0	0	0	1	0	0	0	595	623	22	2	443	2	AMY2B	1	104115802	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1033	104115802	145134819	866	9017											
AMY2B	280	broad.mit.edu	37	chr1	104115880	104115880	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaactacaatgatgctactCaggtaaatttttttatgaga	7	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104115880	A	A	104115880	3	1	9	1	0	0	0	0	1	0	0	0	595	827	29	3	521	3	AMY2B	1	104115880	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	104115880	145134741	867	9018											
AMY2B	280	broad.mit.edu	37	chr1	104116351	104116351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagattgtcgtctggttGgtcttcttgatcttgcactg	11	8	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104116351	T	T	104116351	3	4	9	1	0	0	0	0	1	0	0	0	595	1348	47	2	549	2	AMY2B	1	104116351	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	471	104116351	145134270	868	9019											
AMY2B	280	broad.mit.edu	37	chr1	104116937	104116937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactactttggaaatggccGggtgacagaattcaagtatg	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104116937	T	T	104116937	3	4	9	1	0	0	0	0	1	0	0	0	595	1116	39	1	818	1	AMY2B	1	104116937	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	586	104116937	145133684	869	9020											
AMY2B	280	broad.mit.edu	37	chr1	104116968	104116968	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcaagtatggtgcaaaactCggcacagttattcgcaagtg	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104116968	A	A	104116968	2	1	9	1	0	0	0	0	0	0	0	1	595	871	31	3		3	AMY2B	1	104116968	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	104116968	145133653	870	9021											
AMY2B	280	broad.mit.edu	37	chr1	104116981	104116981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaactcggcacagttattCgcaagtggaatggagagaag	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104116981	A	A	104116981	3	1	9	1	0	0	0	0	1	0	0	0	595	884	31	3	862	3	AMY2B	1	104116981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	104116981	145133640	871	9022											
AMY2B	280	broad.mit.edu	37	chr1	104117906	104117906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgtctttgtggataacCatgacaatcaacgaggacat	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104117906	A	A	104117906	3	1	9	1	0	0	0	0	1	0	0	0	595	594	21	2	962	2	AMY2B	1	104117906	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	925	104117906	145132715	872	9023											
AMY2B	280	broad.mit.edu	37	chr1	104117958	104117958	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctctattcttaccttctGggatgctaggtagaaaacca	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104117958	T	T	104117958	3	4	9	1	0	0	0	0	1	0	0	0	595	1357	47	2	1014	2	AMY2B	1	104117958	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	104117958	145132663	873	9024											
AMY2B	280	broad.mit.edu	37	chr1	104118133	104118133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgagtaatgtcaagctacCgttggccaagacagtttcaa	9	10	2	1	rs147059247	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104118133	A	A	104118133	3	1	9	1	0	0	0	0	1	0	0	0	595	652	23	1	1098	1	AMY2B	1	104118133	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175	104118133	145132488	874	9025											
AMY2B	280	broad.mit.edu	37	chr1	104120274	104120274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctaatagtaaactttcCattgcattttatttaaaaca	2	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104120274	A	A	104120274	1	1	9	0	1	0	0	0	0	0	0	0	595	609	21	2		2	AMY2B	1	104120274	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2141	104120274	145130347	875	9026											
AMY2B	280	broad.mit.edu	37	chr1	104121994	104121994	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catactgtgatgtcatttctGgagataaaattaatggcaat	8	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104121994	T	T	104121994	4	4	9	1	0	0	0	0	0	1	0	0	595	1349	47	2	1446	2	AMY2B	1	104121994	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1720	104121994	145128627	876	9027											
AMY2B	280	broad.mit.edu	37	chr1	104122088	104122088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaactctgctgaggatcCatttattgcaattcatgctg	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104122088	A	A	104122088	3	1	9	1	0	0	0	0	1	0	0	0	595	594	21	2	1540	2	AMY2B	1	104122088	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	104122088	145128533	877	9028											
AMY2A	279	broad.mit.edu	37	chr1	104160136	104160136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaatacacaacaaggacGgacatctattgttcatctgt	6	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104160136	T	T	104160136	3	4	9	1	0	0	0	0	1	0	0	0	594	1116	39	1	76	1	AMY2A	1	104160136	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38048	104160136	145090485	878	9029											
AMY2A	279	broad.mit.edu	37	chr1	104160208	104160208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgagcgatatttagctcCgaagggatttggaggggttc	15	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104160208	A	A	104160208	3	1	9	1	0	0	0	0	1	0	0	0	594	652	23	1	148	1	AMY2A	1	104160208	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	104160208	145090413	879	9030											
AMY2A	279	broad.mit.edu	37	chr1	104160613	104160613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgttgcaatttacaaccCtttcagaccttggtgggaaa	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104160613	A	A	104160613	3	1	9	1	0	0	0	0	1	0	0	0	594	681	24	2	212	2	AMY2A	1	104160613	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	405	104160613	145090008	880	9031											
AMY2A	279	broad.mit.edu	37	chr1	104163172	104163172	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcctaaatttctactaGgtaattgatctgggtggtga	10	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104163172	T	T	104163172	5	4	9	1	0	0	0	0	0	0	1	0	594	1014	35	2	762	2	AMY2A	1	104163172	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	2559	104163172	145087449	881	9032											
NTNG1	22854	broad.mit.edu	37	chr1	107867462	107867462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggataaggctgttaagaCcagccgttggggaaatattt	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107867462	A	A	107867462	3	1	9	1	0	0	0	0	1	0	0	0	10799	507	18	3	811	3	NTNG1	1	107867462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3704290	107867462	141383159	882	9033											
VAV3	10451	broad.mit.edu	37	chr1	108315357	108315357	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaagtaaaagtcctacGggctgatgtgcttcctctgc	9	10	1	1	rs150482374		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108315357	T	T	108315357	2	4	9	1	0	0	0	0	0	0	0	1	17260	1130	39	1		1	VAV3	1	108315357	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	447895	108315357	140935264	883	9034											
AKNAD1	254268	broad.mit.edu	37	chr1	109395299	109395299	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccatgtgtgtgcagccCgatcgctctcgtcctctgcc	9	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109395299	A	A	109395299	1	1	9	0	1	0	0	0	0	0	0	0	464	667	23	1		1	AKNAD1	1	109395299	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1079942	109395299	139855322	884	9035											
C1orf194	127003	broad.mit.edu	37	chr1	109650546	109650546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcaatgctaggtacctcGggatcaaaatagtaggcatc	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109650546	T	T	109650546	2	4	9	1	0	0	0	0	0	0	0	1	2045	1103	39	1		1	C1orf194	1	109650546	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	255247	109650546	139600075	885	9036											
KIAA1324	57535	broad.mit.edu	37	chr1	109714584	109714584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgaagcaatctggcacCgttaacttcgaatactacta	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109714584	A	A	109714584	2	1	9	1	0	0	0	0	0	0	0	1	8293	639	23	1		1	KIAA1324	1	109714584	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64038	109714584	139536037	886	9037											
SARS	6301	broad.mit.edu	37	chr1	109771946	109771946	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taccacaagggctatctttaGagcacaacagggttagggca	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109771946	T	T	109771946	1	4	9	0	1	0	0	0	0	0	0	0	13956	957	33	3		3	SARS	1	109771946	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57362	109771946	139478675	887	9038											
CELSR2	1952	broad.mit.edu	37	chr1	109808480	109808480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcaagccaggtgtcatcGggcgtcagtgtgaccgctgt	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109808480	T	T	109808480	3	4	9	1	0	0	0	0	1	0	0	0	3252	1116	39	1	5905	1	CELSR2	1	109808480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36534	109808480	139442141	888	9039											
PSRC1	84722	broad.mit.edu	37	chr1	109824278	109824278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctttccagatgtagccCggagagccctgactgacccc	10	16	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109824278	A	A	109824278	3	1	9	1	0	0	0	0	1	0	0	0	12825	652	23	1	600	1	PSRC1	1	109824278	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15798	109824278	139426343	889	9040											
MYBPHL	343263	broad.mit.edu	37	chr1	109840823	109840823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaggttcactgtgtcccCaaccttccggatgtaggtct	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109840823	A	A	109840823	3	1	9	1	0	0	0	0	1	0	0	0	10109	594	21	2	890	2	MYBPHL	1	109840823	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16545	109840823	139409798	890	9041											
MYBPHL	343263	broad.mit.edu	37	chr1	109840855	109840855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggtctgcctcagggccCgaggtagccagatcttgggg	16	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109840855	A	A	109840855	3	1	9	1	0	0	0	0	1	0	0	0	10109	652	23	1	922	1	MYBPHL	1	109840855	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	109840855	139409766	891	9042											
SYPL2	284612	broad.mit.edu	37	chr1	110022032	110022032	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaacttcttcctgtgggcCgggaactgttggtttgtgtt	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110022032	A	A	110022032	2	1	9	1	0	0	0	0	0	0	0	1	15582	639	23	1		1	SYPL2	1	110022032	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	181177	110022032	139228589	892	9043											
GPR61	83873	broad.mit.edu	37	chr1	110085733	110085733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccctctactgccagtgGggtcccggaggtggggctac	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110085733	T	T	110085733	3	4	9	1	0	0	0	0	1	0	0	0	6767	1232	43	2	91	2	GPR61	1	110085733	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63701	110085733	139164888	893	9044											
GSTM4	2948	broad.mit.edu	37	chr1	110201724	110201724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgaaggacttcatctccCgctttgaggtgatgccccca	9	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110201724	A	A	110201724	3	1	9	1	0	0	0	0	1	0	0	0	6906	652	23	1	585	1	GSTM4	1	110201724	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115991	110201724	139048897	894	9045											
GSTM5	2949	broad.mit.edu	37	chr1	110260053	110260053	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaacagcaaatagggccCagtgatgccagaagatggga	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110260053	A	A	110260053	1	1	9	0	1	0	0	0	0	0	0	0	6907	609	21	2		2	GSTM5	1	110260053	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	58329	110260053	138990568	895	9046											
RBM15	64783	broad.mit.edu	37	chr1	110884553	110884553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttggaccagcccaagttGgatgaagtaactcgacgcat	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110884553	T	T	110884553	3	4	9	1	0	0	0	0	1	0	0	0	13224	1339	47	2	2528	2	RBM15	1	110884553	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	624500	110884553	138366068	896	9047											
DRAM2	128338	broad.mit.edu	37	chr1	111660876	111660876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtaaattggcttccaccCgtaaagaaattttctggaac	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111660876	A	A	111660876	3	1	9	1	0	0	0	0	1	0	0	0	4794	652	23	1	97	1	DRAM2	1	111660876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	776323	111660876	137589745	897	9048											
DENND2D	79961	broad.mit.edu	37	chr1	111741263	111741263	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaattacctgggatactcGgtgagtgatgcccactcatt	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111741263	T	T	111741263	2	4	9	1	0	0	0	0	0	0	0	1	4471	1103	39	1		1	DENND2D	1	111741263	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	80387	111741263	137509358	898	9049											
CHI3L2	1117	broad.mit.edu	37	chr1	111778326	111778326	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggcttctcttgactgcGggcgtatctgcagggaggca	15	9	2	1	rs143811682	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111778326	T	T	111778326	2	4	9	1	0	0	0	0	0	0	0	1	3372	1103	39	1		1	CHI3L2	1	111778326	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37063	111778326	137472295	899	9050											
CHIA	27159	broad.mit.edu	37	chr1	111854263	111854263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcagaattagattctacGgggtacagacaatcggttca	9	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111854263	T	T	111854263	1	4	9	0	1	0	0	0	0	0	0	0	3373	1131	39	1		1	CHIA	1	111854263	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	75937	111854263	137396358	900	9051											
CHIA	27159	broad.mit.edu	37	chr1	111857218	111857218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaacttcgggactgcccCgtaagtcttctatggagagc	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111857218	A	A	111857218	3	1	9	1	0	0	0	0	1	0	0	0	3373	666	23	1	328	1	CHIA	1	111857218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2955	111857218	137393403	901	9052											
CHIA	27159	broad.mit.edu	37	chr1	111861280	111861280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctatgccaaggagtctGggatctgggcttactacgag	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111861280	T	T	111861280	3	4	9	1	0	0	0	0	1	0	0	0	3373	1348	47	2	925	2	CHIA	1	111861280	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4062	111861280	137389341	902	9053											
C1orf88	128344	broad.mit.edu	37	chr1	111891247	111891247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgatttaagaactaccCaaaggacacttactatccca	5	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111891247	A	A	111891247	3	1	9	1	0	0	0	0	1	0	0	0	2087	594	21	2	382	2	C1orf88	1	111891247	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29967	111891247	137359374	903	9054											
C1orf88	128344	broad.mit.edu	37	chr1	111891266	111891266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaggacacttactatccCaggtatgtctcctccctttt	5	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111891266	A	A	111891266	2	1	9	1	0	0	0	0	0	0	0	1	2087	581	21	2		2	C1orf88	1	111891266	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	111891266	137359355	904	9055											
OVGP1	5016	broad.mit.edu	37	chr1	111957010	111957010	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgatgcctgctttgcccCgggatgagaaggcttccaac	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111957010	A	A	111957010	1	1	9	0	1	0	0	0	0	0	0	0	11419	667	23	1		1	OVGP1	1	111957010	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	65744	111957010	137293611	905	9056											
OVGP1	5016	broad.mit.edu	37	chr1	111957412	111957412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacagtcaccttttcacGggccacagccttccttctag	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111957412	T	T	111957412	3	4	9	1	0	0	0	0	1	0	0	0	11419	1116	39	1	329	1	OVGP1	1	111957412	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	402	111957412	137293209	906	9057											
ATP5F1	515	broad.mit.edu	37	chr1	111999320	111999320	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagaatgcaattgatacGgagaagtcacaacaggcact	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111999320	T	T	111999320	2	4	9	1	0	0	0	0	0	0	0	1	1156	1103	39	1		1	ATP5F1	1	111999320	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41908	111999320	137251301	907	9058											
RAP1A	5906	broad.mit.edu	37	chr1	112238006	112238006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgttgaaaaatatgaccCaacgatagaagattcctaca	6	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112238006	A	A	112238006	3	1	9	1	0	0	0	0	1	0	0	0	13143	594	21	2	107	2	RAP1A	1	112238006	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	238686	112238006	137012615	908	9059											
KCND3	3752	broad.mit.edu	37	chr1	112524907	112524907	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccgagtcgttgtcgtccaTgagccgctcggcgttctccc	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112524907	A	A	112524907	3	1	9	1	0	0	0	0	1	0	0	0	8090	1464	51	5	1553	5	KCND3	1	112524907	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	286901	112524907	136725714	909	9060											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	112999238	112999238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaccaggtgcctccacGggaaaaatctgtggcattgg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112999238	T	T	112999238	3	4	9	1	0	0	0	0	1	0	0	0	4080	1116	39	1	1138	1	CTTNBP2NL	1	112999238	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	474331	112999238	136251383	910	9061											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	112999429	112999429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcactaagcgtttattgGggtcatcagctagcagccct	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112999429	T	T	112999429	3	4	9	1	0	0	0	0	1	0	0	0	4080	1232	43	2	1329	2	CTTNBP2NL	1	112999429	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	191	112999429	136251192	911	9062											
WNT2B	7482	broad.mit.edu	37	chr1	113057614	113057614	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcagtgggcgagggtgccCgagaatggatccgagagtgt	18	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113057614	A	A	113057614	2	1	9	1	0	0	0	0	0	0	0	1	17514	644	23	1		1	WNT2B	1	113057614	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58185	113057614	136193007	912	9063											
CAPZA1	829	broad.mit.edu	37	chr1	113201665	113201665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgctaaaactatcgatGggcaacagactattattgca	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113201665	T	T	113201665	3	4	9	1	0	0	0	0	1	0	0	0	2666	1348	47	2	470	2	CAPZA1	1	113201665	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	144051	113201665	136048956	913	9064											
MOV10	4343	broad.mit.edu	37	chr1	113231637	113231637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctacgtcaccaagactcGggtcaggttcttcagactcg	11	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113231637	T	T	113231637	3	4	9	1	0	0	0	0	1	0	0	0	9812	1116	39	1	224	1	MOV10	1	113231637	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29972	113231637	136018984	914	9065											
MOV10	4343	broad.mit.edu	37	chr1	113234345	113234345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacatactacccacctcccCgcctcaggcagctgctcccc	7	21	1	0	rs148870988		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113234345	A	A	113234345	3	1	9	1	0	0	0	0	1	0	0	0	9812	652	23	1	913	1	MOV10	1	113234345	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2708	113234345	136016276	915	9066											
MOV10	4343	broad.mit.edu	37	chr1	113241349	113241349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccaggtggagaaaatcCgttactgcatcaccaaactt	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113241349	A	A	113241349	3	1	9	1	0	0	0	0	1	0	0	0	9812	652	23	1	2583	1	MOV10	1	113241349	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7004	113241349	136009272	916	9067											
RHOC	389	broad.mit.edu	37	chr1	113244241	113244241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccatctcaaacacctccCgcactccctccttggtcttg	6	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113244241	A	A	113244241	3	1	9	1	0	0	0	0	1	0	0	0	13445	652	23	1	82	1	RHOC	1	113244241	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2892	113244241	136006380	917	9068											
SLC16A1	6566	broad.mit.edu	37	chr1	113464670	113464670	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgttacagaaagaagctgcAatcaagccacagcctgacaa	9	10	1	3	rs148691598	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113464670	T	T	113464670	2	4	9	1	0	0	0	0	0	0	0	1	14515	126	5	5		5	SLC16A1	1	113464670	Silent	SNP	A	TCGA-05-4396-01A-21D-1855-08	220429	113464670	135785951	918	9069											
LRIG2	9860	broad.mit.edu	37	chr1	113638869	113638869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctataaccagctgaccCgcctggatgaatctgccttt	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113638869	A	A	113638869	3	1	9	1	0	0	0	0	1	0	0	0	9032	652	23	1	1003	1	LRIG2	1	113638869	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	174199	113638869	135611752	919	9070											
LRIG2	9860	broad.mit.edu	37	chr1	113638892	113638892	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgaatctgcctttgtGggtctgagcttattggagag	14	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113638892	T	T	113638892	2	4	9	1	0	0	0	0	0	0	0	1	9032	1335	47	2		2	LRIG2	1	113638892	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	113638892	135611729	920	9071											
MAGI3	260425	broad.mit.edu	37	chr1	114123293	114123293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatatgatggtatgtcccCaaataacatcactaccaccc	5	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114123293	A	A	114123293	1	1	9	0	1	0	0	0	0	0	0	0	9284	609	21	2		2	MAGI3	1	114123293	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	484401	114123293	135127328	921	9072											
MAGI3	260425	broad.mit.edu	37	chr1	114215327	114215327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttgcacagcctgacacCgcagtaatttcagttgtagg	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114215327	A	A	114215327	2	1	9	1	0	0	0	0	0	0	0	1	9284	639	23	1		1	MAGI3	1	114215327	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92034	114215327	135035294	922	9073											
MAGI3	260425	broad.mit.edu	37	chr1	114223974	114223974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggtaagtaaagtagccCactagtagctgaaaagttgt	10	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114223974	A	A	114223974	1	1	9	0	1	0	0	0	0	0	0	0	9284	609	21	2		2	MAGI3	1	114223974	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8647	114223974	135026647	923	9074											
MAGI3	260425	broad.mit.edu	37	chr1	114225853	114225853	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttacacgaagaggtagatcGgttagtcccaaaaagccagc	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114225853	T	T	114225853	2	4	9	1	0	0	0	0	0	0	0	1	9284	1103	39	1		1	MAGI3	1	114225853	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1879	114225853	135024768	924	9075											
MAGI3	260425	broad.mit.edu	37	chr1	114226173	114226173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaatgctgagcagatccCagatgggaaggaaaaatcag	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114226173	A	A	114226173	3	1	9	1	0	0	0	0	1	0	0	0	9284	594	21	2	4119	2	MAGI3	1	114226173	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	320	114226173	135024448	925	9076											
PHTF1	10745	broad.mit.edu	37	chr1	114281395	114281395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtctggctttatgtggccCatctttttcggtttgttttt	9	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114281395	A	A	114281395	3	1	9	1	0	0	0	0	1	0	0	0	11957	594	21	2	2223	2	PHTF1	1	114281395	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55222	114281395	134969226	926	9077											
BCL2L15	440603	broad.mit.edu	37	chr1	114429228	114429228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccgttgaactggtcaccCaacatccgaaggcgaccagc	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114429228	A	A	114429228	3	1	9	1	0	0	0	0	1	0	0	0	1378	593	21	2	323	2	BCL2L15	1	114429228	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147833	114429228	134821393	927	9078											
AP4B1	10717	broad.mit.edu	37	chr1	114438877	114438877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttccttctgaaaaaccCacctatgcagtaatacaaca	3	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114438877	A	A	114438877	1	1	9	0	1	0	0	0	0	0	0	0	753	609	21	2		2	AP4B1	1	114438877	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9649	114438877	134811744	928	9079											
AP4B1	10717	broad.mit.edu	37	chr1	114439051	114439051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattaggaattctttcccCatggacaccaagtagccaaa	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114439051	A	A	114439051	3	1	9	1	0	0	0	0	1	0	0	0	753	594	21	2	892	2	AP4B1	1	114439051	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	174	114439051	134811570	929	9080											
AP4B1	10717	broad.mit.edu	37	chr1	114442813	114442813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagcaaaggtcccttgaccCgcacaaggacatcagtttgt	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114442813	A	A	114442813	3	1	9	1	0	0	0	0	1	0	0	0	753	652	23	1	1416	1	AP4B1	1	114442813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3762	114442813	134807808	930	9081											
AP4B1	10717	broad.mit.edu	37	chr1	114444280	114444280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagatatgtacagaactGgggccacattattattttct	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114444280	T	T	114444280	1	4	9	0	1	0	0	0	0	0	0	0	753	1363	47	2		2	AP4B1	1	114444280	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1467	114444280	134806341	931	9082											
DCLRE1B	64858	broad.mit.edu	37	chr1	114454476	114454476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtgagtctcaaaagaGggtgactatgttgacggccc	12	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114454476	T	T	114454476	3	4	9	1	0	0	0	0	1	0	0	0	4328	1000	35	2	1276	2	DCLRE1B	1	114454476	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10196	114454476	134796145	932	9083											
HIPK1	204851	broad.mit.edu	37	chr1	114483108	114483108	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctggctgggatgtttcaGgacagagtagcaacgacaaa	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114483108	T	T	114483108	4	4	9	1	0	0	0	0	0	1	0	0	7183	1001	35	2	105	2	HIPK1	1	114483108	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28632	114483108	134767513	933	9084											
HIPK1	204851	broad.mit.edu	37	chr1	114483762	114483762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgagtataattttgtcCgttcatacgagtgctttcag	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114483762	A	A	114483762	3	1	9	1	0	0	0	0	1	0	0	0	7183	652	23	1	759	1	HIPK1	1	114483762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	654	114483762	134766859	934	9085											
HIPK1	204851	broad.mit.edu	37	chr1	114506077	114506077	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatcacaccgcagtatgcGgtgccctttactctgagctg	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114506077	T	T	114506077	2	4	9	1	0	0	0	0	0	0	0	1	7183	1103	39	1		1	HIPK1	1	114506077	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22315	114506077	134744544	935	9086											
OLFML3	56944	broad.mit.edu	37	chr1	114523756	114523756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccttgccatggctgccCggaaagcttcccgagtccgg	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114523756	A	A	114523756	2	1	9	1	0	0	0	0	0	0	0	1	10954	643	23	1		1	OLFML3	1	114523756	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17679	114523756	134726865	936	9087											
TRIM33	51592	broad.mit.edu	37	chr1	114940317	114940317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactttaggcgttttctgcGgggctgtataaagtcttcat	11	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114940317	T	T	114940317	3	4	9	1	0	0	0	0	1	0	0	0	16631	1116	39	1	50	1	TRIM33	1	114940317	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	416561	114940317	134310304	937	9088											
TRIM33	51592	broad.mit.edu	37	chr1	114949554	114949554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctgtcagactccagtgGgagcttaccatgcaagcact	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114949554	T	T	114949554	1	4	9	0	1	0	0	0	0	0	0	0	16631	1247	43	2		2	TRIM33	1	114949554	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9237	114949554	134301067	938	9089											
BCAS2	10286	broad.mit.edu	37	chr1	115110661	115110661	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaaacatcaatggttttGggaagatgctgttgtccttc	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115110661	T	T	115110661	1	4	9	0	1	0	0	0	0	0	0	0	1356	1363	47	2		2	BCAS2	1	115110661	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	161107	115110661	134139960	939	9090											
BCAS2	10286	broad.mit.edu	37	chr1	115110765	115110765	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttttcagaagtcttgccGgatgttttctttgtttgcct	9	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115110765	T	T	115110765	2	4	9	1	0	0	0	0	0	0	0	1	1356	1115	39	1		1	BCAS2	1	115110765	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	104	115110765	134139856	940	9091											
BCAS2	10286	broad.mit.edu	37	chr1	115123939	115123939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaaggcagaataatccGgggctgtcaggtagctcagg	13	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115123939	T	T	115123939	3	4	9	1	0	0	0	0	1	0	0	0	1356	1116	39	1	534	1	BCAS2	1	115123939	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13174	115123939	134126682	941	9092											
DENND2C	163259	broad.mit.edu	37	chr1	115130079	115130079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccaaatactggatggccCggatctcaaacaaacctaca	6	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115130079	A	A	115130079	3	1	9	1	0	0	0	0	1	0	0	0	4470	652	23	1	110	1	DENND2C	1	115130079	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6140	115130079	134120542	942	9093											
DENND2C	163259	broad.mit.edu	37	chr1	115144034	115144034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcctagtttactaatagGgaacctttctgaagtaacat	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115144034	T	T	115144034	1	4	9	0	1	0	0	0	0	0	0	0	4470	1247	43	2		2	DENND2C	1	115144034	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13955	115144034	134106587	943	9094											
AMPD1	270	broad.mit.edu	37	chr1	115216583	115216583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagtgagatcattagccCtttctgaaggaaatccaaaa	8	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115216583	A	A	115216583	3	1	9	1	0	0	0	0	1	0	0	0	585	681	24	2	334	2	AMPD1	1	115216583	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72549	115216583	134034038	944	9095											
AMPD1	270	broad.mit.edu	37	chr1	115220592	115220592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttcaagtagaggtccCgtagctcacttgctcctaca	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115220592	A	A	115220592	3	1	9	1	0	0	0	0	1	0	0	0	585	652	23	1	1112	1	AMPD1	1	115220592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4009	115220592	134030029	945	9096											
AMPD1	270	broad.mit.edu	37	chr1	115222356	115222356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaataaaatcacataattcCaaaaagtttcaggcattcaa	3	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115222356	A	A	115222356	1	1	9	0	1	0	0	0	0	0	0	0	585	609	21	2		2	AMPD1	1	115222356	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1764	115222356	134028265	946	9097											
AMPD1	270	broad.mit.edu	37	chr1	115223035	115223035	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattttgaggtgatagccCaggttttcaggaaggttgtc	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115223035	A	A	115223035	2	1	9	1	0	0	0	0	0	0	0	1	585	581	21	2		2	AMPD1	1	115223035	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	679	115223035	134027586	947	9098											
AMPD1	270	broad.mit.edu	37	chr1	115237966	115237966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaaagctatcacgaaccCtaaatgaatgatcaaagctg	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115237966	A	A	115237966	1	1	9	0	1	0	0	0	0	0	0	0	585	696	24	2		2	AMPD1	1	115237966	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14931	115237966	134012655	948	9099											
AMPD1	270	broad.mit.edu	37	chr1	115238051	115238051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacaacaactgagctctcCaaacactttgtacacctacc	3	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115238051	A	A	115238051	1	1	9	0	1	0	0	0	0	0	0	0	585	609	21	2		2	AMPD1	1	115238051	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	85	115238051	134012570	949	9100											
AMPD1	270	broad.mit.edu	37	chr1	115238073	115238073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacactttgtacacctacctGggagtttgaacagaggcatt	9	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115238073	T	T	115238073	3	4	9	1	0	0	0	0	1	0	0	0	585	1348	47	2	2287	2	AMPD1	1	115238073	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	115238073	134012548	950	9101											
NRAS	4893	broad.mit.edu	37	chr1	115251227	115251227	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttgagttttttcattcGgtactggcgtatttctctta	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115251227	T	T	115251227	2	4	9	1	0	0	0	0	0	0	0	1	10735	1124	39	1		1	NRAS	1	115251227	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13154	115251227	133999394	951	9102											
CSDE1	7812	broad.mit.edu	37	chr1	115267908	115267908	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctttggacaagctatactCgaccatgtcccccagttcca	7	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115267908	A	A	115267908	4	1	9	1	0	0	0	0	0	1	0	0	3963	893	31	3	733	3	CSDE1	1	115267908	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16681	115267908	133982713	952	9103											
CSDE1	7812	broad.mit.edu	37	chr1	115272948	115272948	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctttttctaccgtgccCagaaaacggtgatctgaatg	9	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115272948	A	A	115272948	2	1	9	1	0	0	0	0	0	0	0	1	3963	581	21	2		2	CSDE1	1	115272948	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5040	115272948	133977673	953	9104											
CSDE1	7812	broad.mit.edu	37	chr1	115272968	115272968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaacggtgatctgaatGggaatgaaatgaaaccgtgc	12	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115272968	T	T	115272968	3	4	9	1	0	0	0	0	1	0	0	0	3963	1348	47	2	1165	2	CSDE1	1	115272968	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	115272968	133977653	954	9105											
CSDE1	7812	broad.mit.edu	37	chr1	115275286	115275286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaacttctatattggttgctCgctctaatttgtcacgtcgg	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115275286	A	A	115275286	3	1	9	1	0	0	0	0	1	0	0	0	3963	884	31	3	1451	3	CSDE1	1	115275286	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2318	115275286	133975335	955	9106											
CSDE1	7812	broad.mit.edu	37	chr1	115280606	115280606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccattcattcgttcttcaGggaggatttcttgttttatc	8	8	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115280606	T	T	115280606	3	4	9	1	0	0	0	0	1	0	0	0	3963	1000	35	2	2177	2	CSDE1	1	115280606	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5320	115280606	133970015	956	9107											
CSDE1	7812	broad.mit.edu	37	chr1	115280660	115280660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaatgggtttcccagtcCgtcggtccgatgatacttca	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115280660	A	A	115280660	3	1	9	1	0	0	0	0	1	0	0	0	3963	652	23	1	2231	1	CSDE1	1	115280660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	115280660	133969961	957	9108											
CSDE1	7812	broad.mit.edu	37	chr1	115282358	115282358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccattatactgtgaacagtGgaagaaaagtctagcttgac	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115282358	T	T	115282358	3	4	9	1	0	0	0	0	1	0	0	0	3963	1348	47	2	2314	2	CSDE1	1	115282358	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1698	115282358	133968263	958	9109											
CSDE1	7812	broad.mit.edu	37	chr1	115282400	115282400	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaacactgaataaatcCgtaagaggttaacagttttt	7	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115282400	A	A	115282400	4	1	9	1	0	0	0	0	0	1	0	0	3963	661	23	1	2356	1	CSDE1	1	115282400	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	115282400	133968221	959	9110											
CSDE1	7812	broad.mit.edu	37	chr1	115282478	115282478	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagggtacccattatgtcCattgttgtggagaaggtttg	12	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115282478	A	A	115282478	4	1	9	1	0	0	0	0	0	1	0	0	3963	603	21	2	2434	2	CSDE1	1	115282478	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	115282478	133968143	960	9111											
SIKE1	80143	broad.mit.edu	37	chr1	115318922	115318922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcatatcttccagactcGgaaaactatgaaatactgtg	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115318922	T	T	115318922	1	4	9	0	1	0	0	0	0	0	0	0	14433	1131	39	1		1	SIKE1	1	115318922	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36444	115318922	133931699	961	9112											
SIKE1	80143	broad.mit.edu	37	chr1	115321741	115321741	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttcaatttggttcatttcGaatttattcaaagtttctta	4	5	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115321741	T	T	115321741	1	4	9	0	1	0	0	0	0	0	0	0	14433	1073	37	3		3	SIKE1	1	115321741	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2819	115321741	133928880	962	9113											
SIKE1	80143	broad.mit.edu	37	chr1	115321845	115321845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaactgtaacatctgtttcCgatatttgctcatgataagt	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115321845	A	A	115321845	3	1	9	1	0	0	0	0	1	0	0	0	14433	652	23	1	309	1	SIKE1	1	115321845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	115321845	133928776	963	9114											
SIKE1	80143	broad.mit.edu	37	chr1	115322975	115322975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgccgccctctgagaccGggaataaattccaggccgag	11	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115322975	T	T	115322975	1	4	9	0	1	0	0	0	0	0	0	0	14433	1131	39	1		1	SIKE1	1	115322975	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1130	115322975	133927646	964	9115											
SYCP1	6847	broad.mit.edu	37	chr1	115417139	115417139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatagatgaatatgaacGggaagaaaccaggcaagttt	10	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115417139	T	T	115417139	3	4	9	1	0	0	0	0	1	0	0	0	15550	1116	39	1	641	1	SYCP1	1	115417139	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	94164	115417139	133833482	965	9116											
TSHB	7252	broad.mit.edu	37	chr1	115576620	115576620	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcaaactgtttcttccCaaatatgctctgtcccagga	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115576620	A	A	115576620	2	1	9	1	0	0	0	0	0	0	0	1	16746	581	21	2		2	TSHB	1	115576620	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	159481	115576620	133674001	966	9117											
TSHB	7252	broad.mit.edu	37	chr1	115576710	115576710	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccactccatgttgctccCtatttttcctatcctgttgc	5	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115576710	A	A	115576710	2	1	9	1	0	0	0	0	0	0	0	1	16746	668	24	2		2	TSHB	1	115576710	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	115576710	133673911	967	9118											
TSPAN2	10100	broad.mit.edu	37	chr1	115600202	115600202	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatgtaggttggacctgttCggagctttcttttccacagc	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115600202	A	A	115600202	4	1	9	1	0	0	0	0	0	1	0	0	16769	893	31	3	205	3	TSPAN2	1	115600202	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23492	115600202	133650419	968	9119											
TSPAN2	10100	broad.mit.edu	37	chr1	115600264	115600264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagacttcaggaccaggcGggaggagtagcagctacaag	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115600264	T	T	115600264	1	4	9	0	1	0	0	0	0	0	0	0	16769	1131	39	1		1	TSPAN2	1	115600264	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	62	115600264	133650357	969	9120											
TSPAN2	10100	broad.mit.edu	37	chr1	115615685	115615685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagagcatgcacagatcCgagagcaggctctaggcaca	13	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115615685	A	A	115615685	1	1	9	0	1	0	0	0	0	0	0	0	16769	667	23	1		1	TSPAN2	1	115615685	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15421	115615685	133634936	970	9121											
VANGL1	81839	broad.mit.edu	37	chr1	116202214	116202214	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacattttgataaacccagaGagttaattaacatggcataa	6	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116202214	T	T	116202214	1	4	9	0	1	0	0	0	0	0	0	0	17246	957	33	3		3	VANGL1	1	116202214	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	586529	116202214	133048407	971	9122											
VANGL1	81839	broad.mit.edu	37	chr1	116202292	116202293	+	Silent	DNP	CC	GA	GA													agagagagacacaagtcaccCcggaataaagacggcagagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	116202293	GA	GA	116202292	2	3	9	1	0	0	0	0	0	0	0	1	17246	610	22	4		4	VANGL1	1	116202292	Silent	DNP	CC	TCGA-05-4396-01A-21D-1855-08	78	116202292	133048329	972	9123											
VANGL1	81839	broad.mit.edu	37	chr1	116206326	116206326	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggccatcacaggcacctcGgagcacagcatatcccaaga	9	15	1	1	rs146495414		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116206326	T	T	116206326	2	4	9	1	0	0	0	0	0	0	0	1	17246	1103	39	1		1	VANGL1	1	116206326	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4034	116206326	133044295	973	9124											
VANGL1	81839	broad.mit.edu	37	chr1	116206580	116206580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctgctcatagggacctGggcactttttttccgcaagc	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116206580	T	T	116206580	3	4	9	1	0	0	0	0	1	0	0	0	17246	1357	47	2	513	2	VANGL1	1	116206580	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	254	116206580	133044041	974	9125											
VANGL1	81839	broad.mit.edu	37	chr1	116206690	116206690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctattggcttttttacGgggtccgcattttggactct	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116206690	T	T	116206690	3	4	9	1	0	0	0	0	1	0	0	0	17246	1116	39	1	623	1	VANGL1	1	116206690	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110	116206690	133043931	975	9126											
VANGL1	81839	broad.mit.edu	37	chr1	116233994	116233994	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttacagtctgagacatcCgtttaaaagttctatatttg	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116233994	A	A	116233994	2	1	9	1	0	0	0	0	0	0	0	1	17246	639	23	1		1	VANGL1	1	116233994	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27304	116233994	133016627	976	9127											
CASQ2	845	broad.mit.edu	37	chr1	116245602	116245602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatcttgaaagtcttctcCcagtaggcaacgagctgcag	9	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116245602	A	A	116245602	3	1	9	1	0	0	0	0	1	0	0	0	2707	624	22	2	253	2	CASQ2	1	116245602	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11608	116245602	133005019	977	9128											
CASQ2	845	broad.mit.edu	37	chr1	116268050	116268050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaacttggtttgagtttGgggacttaatctaagaagca	10	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116268050	T	T	116268050	1	4	9	0	1	0	0	0	0	0	0	0	2707	1363	47	2		2	CASQ2	1	116268050	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22448	116268050	132982571	978	9129											
CASQ2	845	broad.mit.edu	37	chr1	116280939	116280939	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgctgctgatgatctcCactgggtcttcaattagctg	10	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116280939	A	A	116280939	2	1	9	1	0	0	0	0	0	0	0	1	2707	581	21	2		2	CASQ2	1	116280939	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12889	116280939	132969682	979	9130											
SLC22A15	55356	broad.mit.edu	37	chr1	116563487	116563487	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatgaatgtgtgggcacCgcctactgggcacttgcagg	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116563487	A	A	116563487	2	1	9	1	0	0	0	0	0	0	0	1	14559	639	23	1		1	SLC22A15	1	116563487	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	282548	116563487	132687134	980	9131											
SLC22A15	55356	broad.mit.edu	37	chr1	116563529	116563529	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actacttaaatcatgcagctCtggactgggtgagcagctcc	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116563529	A	A	116563529	1	1	9	0	1	0	0	0	0	0	0	0	14559	928	32	3		3	SLC22A15	1	116563529	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	116563529	132687092	981	9132											
SLC22A15	55356	broad.mit.edu	37	chr1	116569552	116569552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgcagttggcattgccCaatatgccctgttaggatac	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116569552	A	A	116569552	3	1	9	1	0	0	0	0	1	0	0	0	14559	595	21	2	655	2	SLC22A15	1	116569552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6023	116569552	132681069	982	9133											
SLC22A15	55356	broad.mit.edu	37	chr1	116569579	116569579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgttaggatacttcatcCgctcctggaggaccctagcc	9	15	1	0	rs146210337		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116569579	A	A	116569579	3	1	9	1	0	0	0	0	1	0	0	0	14559	652	23	1	682	1	SLC22A15	1	116569579	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	116569579	132681042	983	9134											
SLC22A15	55356	broad.mit.edu	37	chr1	116577850	116577850	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggcctaactctgagtgcGggtgatctaggtggaagtat	14	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116577850	T	T	116577850	2	4	9	1	0	0	0	0	0	0	0	1	14559	1103	39	1		1	SLC22A15	1	116577850	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8271	116577850	132672771	984	9135											
SLC22A15	55356	broad.mit.edu	37	chr1	116577887	116577887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttatgccaacctggccCtgtctggcctcatagagatt	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116577887	A	A	116577887	3	1	9	1	0	0	0	0	1	0	0	0	14559	680	24	2	1050	2	SLC22A15	1	116577887	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	116577887	132672734	985	9136											
SLC22A15	55356	broad.mit.edu	37	chr1	116579932	116579932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctattgtttaggtttggtcGgaagcgaacattatcagcat	10	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116579932	T	T	116579932	3	4	9	1	0	0	0	0	1	0	0	0	14559	1116	39	1	1124	1	SLC22A15	1	116579932	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2045	116579932	132670689	986	9137											
SLC22A15	55356	broad.mit.edu	37	chr1	116605402	116605402	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacaggtgtgtttgcagtGgtgaacagccattccttgtc	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116605402	T	T	116605402	2	4	9	1	0	0	0	0	0	0	0	1	14559	1335	47	2		2	SLC22A15	1	116605402	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25470	116605402	132645219	987	9138											
SLC22A15	55356	broad.mit.edu	37	chr1	116605429	116605430	+	Missense_Mutation	DNP	GG	TT	TT													agccattccttgtccttgctGgggaagctgaccatcagtgc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	116605430	TT	TT	116605429	3	4	9	1	0	0	0	0	1	0	0	0	14559	1335	47	2	1252	2	SLC22A15	1	116605429	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	27	116605429	132645192	988	9139											
SLC22A15	55356	broad.mit.edu	37	chr1	116605491	116605491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacacctctgagctttaccCtacagtcatcaggtacgtgt	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116605491	A	A	116605491	3	1	9	1	0	0	0	0	1	0	0	0	14559	681	24	2	1314	2	SLC22A15	1	116605491	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	116605491	132645130	989	9140											
SLC22A15	55356	broad.mit.edu	37	chr1	116605583	116605583	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaacagaggtgtggtactCatttcatctgcttctggagt	10	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116605583	A	A	116605583	1	1	9	0	1	0	0	0	0	0	0	0	14559	841	29	3		3	SLC22A15	1	116605583	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	116605583	132645038	990	9141											
SLC22A15	55356	broad.mit.edu	37	chr1	116607091	116607091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacttgttccatgttctccCgagttggtgggattattgct	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116607091	A	A	116607091	2	1	9	1	0	0	0	0	0	0	0	1	14559	644	23	1		1	SLC22A15	1	116607091	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1508	116607091	132643530	991	9142											
C1orf161	126868	broad.mit.edu	37	chr1	116663588	116663588	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagatttcccaggctgtGgaggaggtgcagaaagtcgt	15	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116663588	T	T	116663588	2	4	9	1	0	0	0	0	0	0	0	1	2029	1335	47	2		2	C1orf161	1	116663588	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56497	116663588	132587033	992	9143											
C1orf161	126868	broad.mit.edu	37	chr1	116670104	116670104	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtaaggtcagcctgctaGgaaaccgctctgcagtttgg	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116670104	T	T	116670104	4	4	9	1	0	0	0	0	0	1	0	0	2029	1001	35	2	513	2	C1orf161	1	116670104	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6516	116670104	132580517	993	9144											
C1orf161	126868	broad.mit.edu	37	chr1	116670172	116670172	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaactggagctggtcccCgcagtggagatccccaccac	13	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116670172	A	A	116670172	2	1	9	1	0	0	0	0	0	0	0	1	2029	639	23	1		1	C1orf161	1	116670172	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	116670172	132580449	994	9145											
C1orf161	126868	broad.mit.edu	37	chr1	116670823	116670823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggcagctgagcttcctcCgtgctgagcaggtgttactg	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116670823	A	A	116670823	3	1	9	1	0	0	0	0	1	0	0	0	2029	652	23	1	736	1	C1orf161	1	116670823	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	651	116670823	132579798	995	9146											
ATP1A1	476	broad.mit.edu	37	chr1	116927462	116927462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatggaacagacttgagcCgggtatgttctagtttgaaa	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116927462	A	A	116927462	2	1	9	1	0	0	0	0	0	0	0	1	1132	643	23	1		1	ATP1A1	1	116927462	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	256639	116927462	132323159	996	9147											
ATP1A1	476	broad.mit.edu	37	chr1	116930761	116930761	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccttccagctgtacctGggtgtggtgctatcagccgt	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116930761	T	T	116930761	2	4	9	1	0	0	0	0	0	0	0	1	1132	1335	47	2		2	ATP1A1	1	116930761	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3299	116930761	132319860	997	9148											
ATP1A1	476	broad.mit.edu	37	chr1	116931266	116931266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttttccaaagcaagccCttgtgattcgaaatggtgag	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116931266	A	A	116931266	3	1	9	1	0	0	0	0	1	0	0	0	1132	681	24	2	546	2	ATP1A1	1	116931266	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	505	116931266	132319355	998	9149											
ATP1A1	476	broad.mit.edu	37	chr1	116931440	116931440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagctagctctgctgttcGggcagcttgatttgaggggt	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931440	T	T	116931440	1	4	9	0	1	0	0	0	0	0	0	0	1132	1131	39	1		1	ATP1A1	1	116931440	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	174	116931440	132319181	999	9150											
ATP1A1	476	broad.mit.edu	37	chr1	116931470	116931470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgaggggtacagtagccCatgataaggctggtgtattc	13	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116931470	A	A	116931470	1	1	9	0	1	0	0	0	0	0	0	0	1132	609	21	2		2	ATP1A1	1	116931470	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	116931470	132319151	1000	9151											
ATP1A1	476	broad.mit.edu	37	chr1	116932065	116932065	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccttctttttaaggcacCgcacgtggtattgttgtcta	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116932065	A	A	116932065	2	1	9	1	0	0	0	0	0	0	0	1	1132	639	23	1		1	ATP1A1	1	116932065	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	595	116932065	132318556	1001	9152											
ATP1A1	476	broad.mit.edu	37	chr1	116935595	116935595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgagatacccttcaactcCaccaacaagtaccaggtctg	7	14	2	1	rs144387508		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116935595	A	A	116935595	2	1	9	1	0	0	0	0	0	0	0	1	1132	581	21	2		2	ATP1A1	1	116935595	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3530	116935595	132315026	1002	9153											
ATP1A1	476	broad.mit.edu	37	chr1	116937655	116937655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactccagagaaaggtaggcGggctgaataggctgctgttg	15	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116937655	T	T	116937655	1	4	9	0	1	0	0	0	0	0	0	0	1132	1131	39	1		1	ATP1A1	1	116937655	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2060	116937655	132312966	1003	9154											
ATP1A1	476	broad.mit.edu	37	chr1	116941344	116941344	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgctggctcagatgtgtcCaagcaagctgctgacatgat	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116941344	A	A	116941344	2	1	9	1	0	0	0	0	0	0	0	1	1132	581	21	2		2	ATP1A1	1	116941344	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3689	116941344	132309277	1004	9155											
ATP1A1	476	broad.mit.edu	37	chr1	116941595	116941595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatccattgcttatacCttaaccagtaacattcccga	4	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116941595	A	A	116941595	2	1	9	1	0	0	0	0	0	0	0	1	1132	668	24	2		2	ATP1A1	1	116941595	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	251	116941595	132309026	1005	9156											
ATP1A1	476	broad.mit.edu	37	chr1	116943569	116943569	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattcacctgttgggcctcCgagtggactgggatgaccgc	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116943569	A	A	116943569	2	1	9	1	0	0	0	0	0	0	0	1	1132	644	23	1		1	ATP1A1	1	116943569	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1974	116943569	132307052	1006	9157											
ATP1A1	476	broad.mit.edu	37	chr1	116944175	116944175	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccctactttgattttaGgaacaagatcttgatatttg	6	8	2	3	rs112412203		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116944175	T	T	116944175	5	4	9	1	0	0	0	0	0	0	1	0	1132	1014	35	2	2947	2	ATP1A1	1	116944175	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	606	116944175	132306446	1007	9158											
ATP1A1	476	broad.mit.edu	37	chr1	116944241	116944241	+	Missense_Mutation	SNP	C	A	A													tgctttcctttcctactgccCtggaatgggtgttgctctta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116944241	A	A	116944241	3	1	9	1	0	0	0	0	1	0	0	0	1132	681	24	2	3013	2	ATP1A1	1	116944241	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	116944241	132306380	1008	9159	38	3									
ATP1A1	476	broad.mit.edu	37	chr1	116944248	116944248	+	Missense_Mutation	SNP	G	T	T													ctttcctactgccctggaatGggtgttgctcttaggatgta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116944248	T	T	116944248	3	4	9	1	0	0	0	0	1	0	0	0	1132	1348	47	2	3020	2	ATP1A1	1	116944248	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	116944248	132306373	1009	9160	38	3									
ATP1A1	476	broad.mit.edu	37	chr1	116944258	116944258	+	Missense_Mutation	SNP	C	A	A													gccctggaatgggtgttgctCttaggatgtatcccctcaag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116944258	A	A	116944258	3	1	9	1	0	0	0	0	1	0	0	0	1132	913	32	3	3030	3	ATP1A1	1	116944258	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	116944258	132306363	1010	9161	38	3									
ATP1A1	476	broad.mit.edu	37	chr1	116944301	116944301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgatcctctggtagctcCaaaaagtatgaaatagtatg	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116944301	A	A	116944301	1	1	9	0	1	0	0	0	0	0	0	0	1132	609	21	2		2	ATP1A1	1	116944301	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	116944301	132306320	1011	9162											
IGSF3	3321	broad.mit.edu	37	chr1	117142963	117142963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctgtgactgcgaagccCatttctggagagaaagcaga	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117142963	A	A	117142963	3	1	9	1	0	0	0	0	1	0	0	0	7671	594	21	2	1975	2	IGSF3	1	117142963	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	198662	117142963	132107658	1012	9163											
IGSF3	3321	broad.mit.edu	37	chr1	117146466	117146466	+	Silent	SNP	G	T	T													taggacgagcctggctgcacGgtgccatcccggtctagcca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117146466	T	T	117146466	2	4	9	1	0	0	0	0	0	0	0	1	7671	1103	39	1		1	IGSF3	1	117146466	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3503	117146466	132104155	1013	9164	39	2									
IGSF3	3321	broad.mit.edu	37	chr1	117146476	117146476	+	Missense_Mutation	SNP	C	A	A													ctggctgcacggtgccatccCggtctagccacatgatattg					rs148790256		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117146476	A	A	117146476	3	1	9	1	0	0	0	0	1	0	0	0	7671	652	23	1	2214	1	IGSF3	1	117146476	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	117146476	132104145	1014	9165	39	2									
IGSF3	3321	broad.mit.edu	37	chr1	117150584	117150584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggggaggactatgatgGggatgttcttgggacgcttg	19	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117150584	T	T	117150584	3	4	9	1	0	0	0	0	1	0	0	0	7671	1232	43	2	2474	2	IGSF3	1	117150584	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4108	117150584	132100037	1015	9166											
IGSF3	3321	broad.mit.edu	37	chr1	117150656	117150656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctctcgctcagtcaccCggcagttgtatttcccgcta	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117150656	A	A	117150656	3	1	9	1	0	0	0	0	1	0	0	0	7671	652	23	1	2546	1	IGSF3	1	117150656	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	117150656	132099965	1016	9167											
IGSF3	3321	broad.mit.edu	37	chr1	117150672	117150672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccggcagttgtatttccCgctatcttcctggcggaggt	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117150672	A	A	117150672	3	1	9	1	0	0	0	0	1	0	0	0	7671	652	23	1	2562	1	IGSF3	1	117150672	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	117150672	132099949	1017	9168											
IGSF3	3321	broad.mit.edu	37	chr1	117156621	117156621	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgaagcatgaaatctcGgctcagggagatgacctcca	13	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117156621	T	T	117156621	2	4	9	1	0	0	0	0	0	0	0	1	7671	1124	39	1		1	IGSF3	1	117156621	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5949	117156621	132094000	1018	9169											
CD2	914	broad.mit.edu	37	chr1	117311242	117311242	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctagtcatcgtccccCgcctcctggacaccgtgttc	9	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117311242	A	A	117311242	3	1	9	1	0	0	0	0	1	0	0	0	3009	652	23	1	911	1	CD2	1	117311242	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154621	117311242	131939379	1019	9170											
CD2	914	broad.mit.edu	37	chr1	117311326	117311326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcaccagcagaaaggccCgcccctccccagacctcgag	9	18	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117311326	A	A	117311326	3	1	9	1	0	0	0	0	1	0	0	0	3009	652	23	1	995	1	CD2	1	117311326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	117311326	131939295	1020	9171											
PTGFRN	5738	broad.mit.edu	37	chr1	117484714	117484714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggttaaaggtacagtcCtcacatgggcttgttatgcc	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117484714	A	A	117484714	1	1	9	0	1	0	0	0	0	0	0	0	12856	696	24	2		2	PTGFRN	1	117484714	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	173388	117484714	131765907	1021	9172											
PTGFRN	5738	broad.mit.edu	37	chr1	117491894	117491894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtaacatcacaacagacCgagccgatgacgtccggccc	9	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117491894	A	A	117491894	2	1	9	1	0	0	0	0	0	0	0	1	12856	644	23	1		1	PTGFRN	1	117491894	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7180	117491894	131758727	1022	9173											
PTGFRN	5738	broad.mit.edu	37	chr1	117491966	117491966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaccctacctggctccCgcgtgttggcgcggcttgac	12	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117491966	A	A	117491966	3	1	9	1	0	0	0	0	1	0	0	0	12856	652	23	1	999	1	PTGFRN	1	117491966	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	117491966	131758655	1023	9174											
PTGFRN	5738	broad.mit.edu	37	chr1	117509537	117509537	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcattcattccagattcCgtgcttgtggtgaaggcgag	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117509537	A	A	117509537	2	1	9	1	0	0	0	0	0	0	0	1	12856	639	23	1		1	PTGFRN	1	117509537	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17571	117509537	131741084	1024	9175											
PTGFRN	5738	broad.mit.edu	37	chr1	117509764	117509764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattggacagatgcatcacGggtggatggcgttgttttag	15	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117509764	T	T	117509764	3	4	9	1	0	0	0	0	1	0	0	0	12856	1116	39	1	1893	1	PTGFRN	1	117509764	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	227	117509764	131740857	1025	9176											
PTGFRN	5738	broad.mit.edu	37	chr1	117509808	117509808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgcaggaggatgagttcCgctatcgaatgtaccagact	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117509808	A	A	117509808	3	1	9	1	0	0	0	0	1	0	0	0	12856	652	23	1	1937	1	PTGFRN	1	117509808	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	117509808	131740813	1026	9177											
PTGFRN	5738	broad.mit.edu	37	chr1	117516886	117516886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacacaccatcagtaattcGgggagatctgatcaaattgt	9	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117516886	T	T	117516886	3	4	9	1	0	0	0	0	1	0	0	0	12856	1116	39	1	2134	1	PTGFRN	1	117516886	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7078	117516886	131733735	1027	9178											
PTGFRN	5738	broad.mit.edu	37	chr1	117516908	117516908	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagatctgatcaaattgttCtgtatcatcactgtcgaggg	11	7	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117516908	A	A	117516908	3	1	9	1	0	0	0	0	1	0	0	0	12856	912	32	3	2156	3	PTGFRN	1	117516908	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	117516908	131733713	1028	9179											
PTGFRN	5738	broad.mit.edu	37	chr1	117516974	117516974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatcctcaccccttcacCatgttgctttctgtaaatgt	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117516974	A	A	117516974	1	1	9	0	1	0	0	0	0	0	0	0	12856	609	21	2		2	PTGFRN	1	117516974	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	117516974	131733647	1029	9180											
PTGFRN	5738	broad.mit.edu	37	chr1	117527516	117527516	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggcaactactactgttcCgtgactccatgggtgaagtc	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117527516	A	A	117527516	2	1	9	1	0	0	0	0	0	0	0	1	12856	639	23	1		1	PTGFRN	1	117527516	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10542	117527516	131723105	1030	9181											
PTGFRN	5738	broad.mit.edu	37	chr1	117529500	117529500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcctgtcctgtctcatcGggtactgcagctcccactgg	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117529500	T	T	117529500	3	4	9	1	0	0	0	0	1	0	0	0	12856	1116	39	1	2585	1	PTGFRN	1	117529500	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1984	117529500	131721121	1031	9182											
CD101	9398	broad.mit.edu	37	chr1	117552513	117552513	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtaacagttcagaaaGgaccactgtttagagctgaa	11	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117552513	T	T	117552513	4	4	9	1	0	0	0	0	0	1	0	0	2992	1001	35	2	91	2	CD101	1	117552513	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23013	117552513	131698108	1032	9183											
CD101	9398	broad.mit.edu	37	chr1	117556075	117556075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacagcttgtttgctgaaGggaaacccttagaactggtt	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117556075	T	T	117556075	3	4	9	1	0	0	0	0	1	0	0	0	2992	1000	35	2	903	2	CD101	1	117556075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3562	117556075	131694546	1033	9184											
CD101	9398	broad.mit.edu	37	chr1	117556436	117556436	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacgtaaagtcaaggccaggCatgcattgggctgctttcag	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117556436	G	G	117556436	1	3	9	0	1	0	0	0	0	0	0	0	2992	725	25	4		4	CD101	1	117556436	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	361	117556436	131694185	1034	9185											
CD101	9398	broad.mit.edu	37	chr1	117561132	117561132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatacaacaaccgcccccCgagggcttctgccatctctc	6	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117561132	A	A	117561132	3	1	9	1	0	0	0	0	1	0	0	0	2992	652	23	1	1989	1	CD101	1	117561132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4696	117561132	131689489	1035	9186											
CD101	9398	broad.mit.edu	37	chr1	117564449	117564449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatactgagaaggtttccCaagacttatttcagctgcac	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117564449	A	A	117564449	3	1	9	1	0	0	0	0	1	0	0	0	2992	595	21	2	2298	2	CD101	1	117564449	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3317	117564449	131686172	1036	9187											
TTF2	8458	broad.mit.edu	37	chr1	117603116	117603116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccggcgtccgcgatggccCgaataaaggaaagagcttct	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117603116	A	A	117603116	3	1	9	1	0	0	0	0	1	0	0	0	16845	652	23	1	74	1	TTF2	1	117603116	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38667	117603116	131647505	1037	9188											
TTF2	8458	broad.mit.edu	37	chr1	117617984	117617984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagagaaaaggttaccCagcttttgcctcaaaatgtt	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117617984	A	A	117617984	3	1	9	1	0	0	0	0	1	0	0	0	16845	595	21	2	796	2	TTF2	1	117617984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14868	117617984	131632637	1038	9189											
TTF2	8458	broad.mit.edu	37	chr1	117618443	117618443	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccctcagacccagtagccCggcgtgtctaccttacaaca	7	16	2	1	rs148191511		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117618443	A	A	117618443	2	1	9	1	0	0	0	0	0	0	0	1	16845	643	23	1		1	TTF2	1	117618443	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	459	117618443	131632178	1039	9190											
TTF2	8458	broad.mit.edu	37	chr1	117631543	117631543	+	Missense_Mutation	SNP	C	A	A													gtaagctacaagcctgtgccCgttgggctgtcactggaacc					rs35565289	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117631543	A	A	117631543	3	1	9	1	0	0	0	0	1	0	0	0	16845	652	23	1	2331	1	TTF2	1	117631543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13100	117631543	131619078	1040	9191	40	2									
TTF2	8458	broad.mit.edu	37	chr1	117631547	117631547	+	Missense_Mutation	SNP	G	T	T													gctacaagcctgtgcccgttGggctgtcactggaaccccca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117631547	T	T	117631547	3	4	9	1	0	0	0	0	1	0	0	0	16845	1357	47	2	2335	2	TTF2	1	117631547	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	117631547	131619074	1041	9192	40	2									
TTF2	8458	broad.mit.edu	37	chr1	117632790	117632790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaagagccttttgctgaGgagaacaaaagaccagctgg	11	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117632790	T	T	117632790	3	4	9	1	0	0	0	0	1	0	0	0	16845	1000	35	2	2510	2	TTF2	1	117632790	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1243	117632790	131617831	1042	9193											
TTF2	8458	broad.mit.edu	37	chr1	117634012	117634012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccaatctggaagaagccCtaataatccattcagtagag	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117634012	A	A	117634012	3	1	9	1	0	0	0	0	1	0	0	0	16845	681	24	2	2713	2	TTF2	1	117634012	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1222	117634012	131616609	1043	9194											
TTF2	8458	broad.mit.edu	37	chr1	117634522	117634522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccgtccacatactgtccCagttgctgagactccgccag	9	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117634522	A	A	117634522	3	1	9	1	0	0	0	0	1	0	0	0	16845	595	21	2	2821	2	TTF2	1	117634522	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	510	117634522	131616099	1044	9195											
TTF2	8458	broad.mit.edu	37	chr1	117635398	117635398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggtcttgtcctttccCtggaagaacagctcagtgct	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117635398	A	A	117635398	3	1	9	1	0	0	0	0	1	0	0	0	16845	680	24	2	2921	2	TTF2	1	117635398	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	876	117635398	131615223	1045	9196											
TTF2	8458	broad.mit.edu	37	chr1	117639997	117639997	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaatctctctcttggccGgaggtgttggtctaaacctg	11	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117639997	T	T	117639997	4	4	9	1	0	0	0	0	0	1	0	0	16845	1117	39	1	3293	1	TTF2	1	117639997	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4599	117639997	131610624	1046	9197											
TTF2	8458	broad.mit.edu	37	chr1	117641501	117641501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccgaatttaccgagtaGggcagcagaaagatgttgtc	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117641501	T	T	117641501	3	4	9	1	0	0	0	0	1	0	0	0	16845	1000	35	2	3402	2	TTF2	1	117641501	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1504	117641501	131609120	1047	9198											
TTF2	8458	broad.mit.edu	37	chr1	117644015	117644015	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttagatttgtttgtgagGgaacagtagaagaaaagatc	11	2	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117644015	T	T	117644015	4	4	9	1	0	0	0	0	0	1	0	0	16845	1233	43	2	3448	2	TTF2	1	117644015	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2514	117644015	131606606	1048	9199											
TTF2	8458	broad.mit.edu	37	chr1	117644104	117644104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctggagaatctgtcacCaagctcaccttggctgacct	11	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117644104	A	A	117644104	2	1	9	1	0	0	0	0	0	0	0	1	16845	581	21	2		2	TTF2	1	117644104	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	89	117644104	131606517	1049	9200											
TTF2	8458	broad.mit.edu	37	chr1	117644166	117644166	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctcctgtggataagggctCagaatagcaccattgctggt	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117644166	A	A	117644166	1	1	9	0	1	0	0	0	0	0	0	0	16845	841	29	3		3	TTF2	1	117644166	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	117644166	131606455	1050	9201											
TTF2	8458	broad.mit.edu	37	chr1	117644177	117644177	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagggctcagaatagcacCattgctggtttgtattagga	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117644177	A	A	117644177	1	1	9	0	1	0	0	0	0	0	0	0	16845	609	21	2		2	TTF2	1	117644177	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	117644177	131606444	1051	9202											
TRIM45	80263	broad.mit.edu	37	chr1	117655924	117655924	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtggtagggaagggccCgtcgcttgattcccactgct	14	11	0	1	rs141109343	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117655924	A	A	117655924	1	1	9	0	1	0	0	0	0	0	0	0	16645	667	23	1		1	TRIM45	1	117655924	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11747	117655924	131594697	1052	9203											
TRIM45	80263	broad.mit.edu	37	chr1	117658277	117658277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggaaatgtagtatgtccCatccttgttatcctggacca	9	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117658277	A	A	117658277	3	1	9	1	0	0	0	0	1	0	0	0	16645	594	21	2	367	2	TRIM45	1	117658277	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2353	117658277	131592344	1053	9204											
TRIM45	80263	broad.mit.edu	37	chr1	117659386	117659386	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctgaaaaagataaacactCggtcctcacctcgaatgtaa	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117659386	A	A	117659386	1	1	9	0	1	0	0	0	0	0	0	0	16645	899	31	3		3	TRIM45	1	117659386	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1109	117659386	131591235	1054	9205											
TRIM45	80263	broad.mit.edu	37	chr1	117660696	117660696	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctggatcaacctctttGgtattaatcgtaccataaat	7	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117660696	T	T	117660696	2	4	9	1	0	0	0	0	0	0	0	1	16645	1335	47	2		2	TRIM45	1	117660696	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1310	117660696	131589925	1055	9206											
TRIM45	80263	broad.mit.edu	37	chr1	117661003	117661003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcttcagcagcttgtccCgatgctcctcaatggcctta	9	14	2	0	rs142291178	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117661003	A	A	117661003	3	1	9	1	0	0	0	0	1	0	0	0	16645	652	23	1	887	1	TRIM45	1	117661003	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	307	117661003	131589618	1056	9207											
VTCN1	79679	broad.mit.edu	37	chr1	117690400	117690400	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactccgccttttgatctcCgattctgtgaagtgagagaa	10	9	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117690400	A	A	117690400	2	1	9	1	0	0	0	0	0	0	0	1	17361	639	23	1		1	VTCN1	1	117690400	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29397	117690400	131560221	1057	9208											
VTCN1	79679	broad.mit.edu	37	chr1	117699505	117699505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatcctccccaatgttccCagctgaggcgacagtagtga	9	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117699505	A	A	117699505	3	1	9	1	0	0	0	0	1	0	0	0	17361	594	21	2	724	2	VTCN1	1	117699505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9105	117699505	131551116	1058	9209											
VTCN1	79679	broad.mit.edu	37	chr1	117714969	117714969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgaagctttaaataataGggcatctgctaaattgattc	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117714969	T	T	117714969	1	4	9	0	1	0	0	0	0	0	0	0	17361	1015	35	2		2	VTCN1	1	117714969	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15464	117714969	131535652	1059	9210											
MAN1A2	10905	broad.mit.edu	37	chr1	117910821	117910821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgatgactaccccagccCtgctgcccctctctggacgt	8	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117910821	A	A	117910821	3	1	9	1	0	0	0	0	1	0	0	0	9303	680	24	2	18	2	MAN1A2	1	117910821	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	195852	117910821	131339800	1060	9211											
MAN1A2	10905	broad.mit.edu	37	chr1	117910959	117910959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatcactctgtgttttGgggcattctttttccttcca	6	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117910959	T	T	117910959	3	4	9	1	0	0	0	0	1	0	0	0	9303	1348	47	2	156	2	MAN1A2	1	117910959	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138	117910959	131339662	1061	9212											
MAN1A2	10905	broad.mit.edu	37	chr1	117948187	117948187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatgatgaaacatgcttGggataactataggacatatg	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117948187	T	T	117948187	3	4	9	1	0	0	0	0	1	0	0	0	9303	1357	47	2	585	2	MAN1A2	1	117948187	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37228	117948187	131302434	1062	9213											
MAN1A2	10905	broad.mit.edu	37	chr1	117948213	117948213	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actataggacatatgggtggGgacataatgaactcagacct	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117948213	T	T	117948213	4	4	9	1	0	0	0	0	0	1	0	0	9303	1233	43	2	611	2	MAN1A2	1	117948213	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	117948213	131302408	1063	9214											
MAN1A2	10905	broad.mit.edu	37	chr1	118042090	118042090	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaagtattatatcctcCgtccagaagtaattgaaacc	6	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118042090	A	A	118042090	3	1	9	1	0	0	0	0	1	0	0	0	9303	652	23	1	1633	1	MAN1A2	1	118042090	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93877	118042090	131208531	1064	9215											
MAN1A2	10905	broad.mit.edu	37	chr1	118057395	118057395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagatgaggggaaaaaacGgttagagaagactgaaaaac	12	5	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118057395	T	T	118057395	1	4	9	0	1	0	0	0	0	0	0	0	9303	1131	39	1		1	MAN1A2	1	118057395	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15305	118057395	131193226	1065	9216											
MAN1A2	10905	broad.mit.edu	37	chr1	118057532	118057532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagagtagcatcaagtccCctattctgctgttttctgct	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118057532	A	A	118057532	1	1	9	0	1	0	0	0	0	0	0	0	9303	638	22	2		2	MAN1A2	1	118057532	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	137	118057532	131193089	1066	9217											
FAM46C	54855	broad.mit.edu	37	chr1	118165836	118165836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgtggttctgtgttccCttctgaacttcctgccagag	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118165836	A	A	118165836	3	1	9	1	0	0	0	0	1	0	0	0	5618	681	24	2	348	2	FAM46C	1	118165836	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108304	118165836	131084785	1067	9218			5	8	17493659	6	6	491	N	G_C	1.207253e-05
FAM46C	54855	broad.mit.edu	37	chr1	118166117	118166117	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagcacttccaccccacCgtgattggggagagcatgta	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118166117	A	A	118166117	2	1	9	1	0	0	0	0	0	0	0	1	5618	639	23	1		1	FAM46C	1	118166117	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	281	118166117	131084504	1068	9219			5	8	17493659	6	6	491	N	G_C	1.207253e-05
FAM46C	54855	broad.mit.edu	37	chr1	118166139	118166139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattggggagagcatgtacGgggactttgaggaagctttt	16	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118166139	T	T	118166139	3	4	9	1	0	0	0	0	1	0	0	0	5618	1116	39	1	651	1	FAM46C	1	118166139	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	118166139	131084482	1069	9220			5	8	17493659	6	6	491	N	G_C	1.207253e-05
FAM46C	54855	broad.mit.edu	37	chr1	118166214	118166214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagaagaaatcagaggcGggggacttctcaagtacagc	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118166214	T	T	118166214	3	4	9	1	0	0	0	0	1	0	0	0	5618	1116	39	1	726	1	FAM46C	1	118166214	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75	118166214	131084407	1070	9221			5	8	17493659	6	6	491	N	G_C	1.207253e-05
FAM46C	54855	broad.mit.edu	37	chr1	118166248	118166248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacagcaaccttcttgtgcGggacttcaggcccacagacc	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118166248	T	T	118166248	3	4	9	1	0	0	0	0	1	0	0	0	5618	1116	39	1	760	1	FAM46C	1	118166248	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	118166248	131084373	1071	9222			5	8	17493659	6	6	491	N	G_C	1.207253e-05
FAM46C	54855	broad.mit.edu	37	chr1	118166326	118166326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttcttcatcgacttccCggacatccttgaacagcaga	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118166326	A	A	118166326	3	1	9	1	0	0	0	0	1	0	0	0	5618	652	23	1	838	1	FAM46C	1	118166326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	118166326	131084295	1072	9223			5	8	17493659	6	6	491	N	G_C	1.207253e-05
GDAP2	54834	broad.mit.edu	37	chr1	118430400	118430400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaccagcgattataactaGggaaataaatgatataatca	6	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118430400	T	T	118430400	1	4	9	0	1	0	0	0	0	0	0	0	6372	1015	35	2		2	GDAP2	1	118430400	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	264074	118430400	130820221	1073	9224											
GDAP2	54834	broad.mit.edu	37	chr1	118441646	118441646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatttttggccctaagagGgagatttaaaaagttagagc	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118441646	T	T	118441646	1	4	9	0	1	0	0	0	0	0	0	0	6372	1247	43	2		2	GDAP2	1	118441646	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11246	118441646	130808975	1074	9225											
GDAP2	54834	broad.mit.edu	37	chr1	118449231	118449231	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagaatagaaagattactCaataaataaaaaattactta	3	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118449231	A	A	118449231	1	1	9	0	1	0	0	0	0	0	0	0	6372	841	29	3		3	GDAP2	1	118449231	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7585	118449231	130801390	1075	9226											
GDAP2	54834	broad.mit.edu	37	chr1	118455255	118455255	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgtgaatgatgaaccGggcagctagattgaatcctt	11	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118455255	T	T	118455255	2	4	9	1	0	0	0	0	0	0	0	1	6372	1115	39	1		1	GDAP2	1	118455255	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6024	118455255	130795366	1076	9227											
GDAP2	54834	broad.mit.edu	37	chr1	118462867	118462867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatcgaacagtgtcttcCtgaaatatttcagctgtagt	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118462867	A	A	118462867	3	1	9	1	0	0	0	0	1	0	0	0	6372	680	24	2	1476	2	GDAP2	1	118462867	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7612	118462867	130787754	1077	9228											
WDR3	10885	broad.mit.edu	37	chr1	118481203	118481203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtgtagggtcatgggccCagggaaataatgggaaggca	16	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118481203	A	A	118481203	1	1	9	0	1	0	0	0	0	0	0	0	17412	609	21	2		2	WDR3	1	118481203	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18336	118481203	130769418	1078	9229											
WDR3	10885	broad.mit.edu	37	chr1	118482015	118482015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgctagacattttactacGgtgtaacagacttttggaat	8	6	0	2	rs75472846	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118482015	T	T	118482015	1	4	9	0	1	0	0	0	0	0	0	0	17412	1131	39	1		1	WDR3	1	118482015	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	812	118482015	130768606	1079	9230											
WDR3	10885	broad.mit.edu	37	chr1	118483460	118483460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaaacagattgaagaccCggaagaaccagaccccaaga	8	10	0	6	rs113562447	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118483460	A	A	118483460	3	1	9	1	0	0	0	0	1	0	0	0	17412	652	23	1	708	1	WDR3	1	118483460	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1445	118483460	130767161	1080	9231											
WDR3	10885	broad.mit.edu	37	chr1	118483476	118483476	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccggaagaaccagacccCaagaaaatcaaaggatcttc	8	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118483476	A	A	118483476	2	1	9	1	0	0	0	0	0	0	0	1	17412	581	21	2		2	WDR3	1	118483476	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	118483476	130767145	1081	9232											
WDR3	10885	broad.mit.edu	37	chr1	118483784	118483784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagctggttccataatgcGggaaggaagagacagagttg	14	5	0	2	rs144505423	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118483784	T	T	118483784	3	4	9	1	0	0	0	0	1	0	0	0	17412	1116	39	1	853	1	WDR3	1	118483784	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	308	118483784	130766837	1082	9233											
WDR3	10885	broad.mit.edu	37	chr1	118488845	118488845	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatctggatcttttctactCaaaattcataaagttaagaa	4	6	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118488845	A	A	118488845	1	1	9	0	1	0	0	0	0	0	0	0	17412	841	29	3		3	WDR3	1	118488845	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5061	118488845	130761776	1083	9234											
WDR3	10885	broad.mit.edu	37	chr1	118492637	118492637	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttctgtgaagcaaaccCgaactttgcaactagatgaa	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118492637	A	A	118492637	2	1	9	1	0	0	0	0	0	0	0	1	17412	644	23	1		1	WDR3	1	118492637	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3792	118492637	130757984	1084	9235											
WDR3	10885	broad.mit.edu	37	chr1	118492684	118492684	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgtcagttactctccCaatcaaaagctattggctgt	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118492684	A	A	118492684	2	1	9	1	0	0	0	0	0	0	0	1	17412	581	21	2		2	WDR3	1	118492684	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	118492684	130757937	1085	9236											
WDR3	10885	broad.mit.edu	37	chr1	118493536	118493536	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtagtttaaatagtgtctCagtaatatgttgtctttttt	7	3	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118493536	A	A	118493536	1	1	9	0	1	0	0	0	0	0	0	0	17412	841	29	3		3	WDR3	1	118493536	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	852	118493536	130757085	1086	9237											
WDR3	10885	broad.mit.edu	37	chr1	118494625	118494625	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactcatagcaactggctcCgctgataggaatgtgaaaat	10	9	1	2	rs140893583	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118494625	A	A	118494625	2	1	9	1	0	0	0	0	0	0	0	1	17412	639	23	1		1	WDR3	1	118494625	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1089	118494625	130755996	1087	9238											
WDR3	10885	broad.mit.edu	37	chr1	118494727	118494727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcttttcaaatgtctccCtttgagtcacctgtaagtta	6	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118494727	A	A	118494727	1	1	9	0	1	0	0	0	0	0	0	0	17412	696	24	2		2	WDR3	1	118494727	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	118494727	130755894	1088	9239											
WDR3	10885	broad.mit.edu	37	chr1	118496663	118496663	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctattgagttgtacCgagaagaaactgcaaaaatg	12	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118496663	A	A	118496663	2	1	9	1	0	0	0	0	0	0	0	1	17412	644	23	1		1	WDR3	1	118496663	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1936	118496663	130753958	1089	9240											
WDR3	10885	broad.mit.edu	37	chr1	118499735	118499735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcctttctcttatgtccCagacattcttaaactcttta	4	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118499735	A	A	118499735	3	1	9	1	0	0	0	0	1	0	0	0	17412	594	21	2	2592	2	WDR3	1	118499735	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3072	118499735	130750886	1090	9241											
SPAG17	200162	broad.mit.edu	37	chr1	118516126	118516126	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttttcttgtttgtccCgcaacatcctgcagcaagga	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118516126	A	A	118516126	2	1	9	1	0	0	0	0	0	0	0	1	15095	639	23	1		1	SPAG17	1	118516126	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16391	118516126	130734495	1091	9242											
SPAG17	200162	broad.mit.edu	37	chr1	118530716	118530716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaattagaacacattattGgattagcttacctccatgtc	5	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118530716	T	T	118530716	1	4	9	0	1	0	0	0	0	0	0	0	15095	1363	47	2		2	SPAG17	1	118530716	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14590	118530716	130719905	1092	9243											
SPAG17	200162	broad.mit.edu	37	chr1	118548187	118548187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtacacagctgaacaatcCttgtcaatataaagagagcc	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118548187	A	A	118548187	3	1	9	1	0	0	0	0	1	0	0	0	15095	680	24	2	2113	2	SPAG17	1	118548187	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17471	118548187	130702434	1093	9244											
SPAG17	200162	broad.mit.edu	37	chr1	118554809	118554809	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctatctaacttacgctaaaGagttataaaatattgtcatg	5	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118554809	T	T	118554809	1	4	9	0	1	0	0	0	0	0	0	0	15095	957	33	3		3	SPAG17	1	118554809	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6622	118554809	130695812	1094	9245											
SPAG17	200162	broad.mit.edu	37	chr1	118555044	118555044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggccacatggttcatccCaagtgtacttatttttatcc	6	10	1	0	rs140156731	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118555044	A	A	118555044	1	1	9	0	1	0	0	0	0	0	0	0	15095	609	21	2		2	SPAG17	1	118555044	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	235	118555044	130695577	1095	9246											
SPAG17	200162	broad.mit.edu	37	chr1	118574429	118574429	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtcactataacaggaacCactgttggagtgagtgctga	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118574429	A	A	118574429	2	1	9	1	0	0	0	0	0	0	0	1	15095	581	21	2		2	SPAG17	1	118574429	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19385	118574429	130676192	1096	9247											
SPAG17	200162	broad.mit.edu	37	chr1	118581856	118581856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccattcatttaatggagtGgagtggacagagacaggagt	14	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118581856	T	T	118581856	1	4	9	0	1	0	0	0	0	0	0	0	15095	1363	47	2		2	SPAG17	1	118581856	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7427	118581856	130668765	1097	9248											
SPAG17	200162	broad.mit.edu	37	chr1	118581916	118581916	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactaaacagcagcttaccCgtttcaagactttgttcctc	5	14	1	1	rs139693849	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118581916	A	A	118581916	2	1	9	1	0	0	0	0	0	0	0	1	15095	666	23	1		1	SPAG17	1	118581916	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	118581916	130668705	1098	9249											
SPAG17	200162	broad.mit.edu	37	chr1	118584392	118584392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacaattaggaatagccCaaagagactaagttttacag	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118584392	A	A	118584392	1	1	9	0	1	0	0	0	0	0	0	0	15095	609	21	2		2	SPAG17	1	118584392	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2476	118584392	130666229	1099	9250											
SPAG17	200162	broad.mit.edu	37	chr1	118584427	118584427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagaattggagtttaccGggtaagttatcttaggttct	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118584427	T	T	118584427	3	4	9	1	0	0	0	0	1	0	0	0	15095	1130	39	1	3730	1	SPAG17	1	118584427	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	118584427	130666194	1100	9251											
SPAG17	200162	broad.mit.edu	37	chr1	118584619	118584619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgctttcttttcttccCttaagcgctcctcttctgct	4	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118584619	A	A	118584619	3	1	9	1	0	0	0	0	1	0	0	0	15095	681	24	2	3922	2	SPAG17	1	118584619	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	192	118584619	130666002	1101	9252											
SPAG17	200162	broad.mit.edu	37	chr1	118624124	118624124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggcagggttgtcccacGgtatgttgaacatttcagaa	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118624124	T	T	118624124	3	4	9	1	0	0	0	0	1	0	0	0	15095	1116	39	1	4907	1	SPAG17	1	118624124	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39505	118624124	130626497	1102	9253											
SPAG17	200162	broad.mit.edu	37	chr1	118629272	118629272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccacatcggttttccttGggctaacctgattattatta	6	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118629272	T	T	118629272	1	4	9	0	1	0	0	0	0	0	0	0	15095	1363	47	2		2	SPAG17	1	118629272	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5148	118629272	130621349	1103	9254											
SPAG17	200162	broad.mit.edu	37	chr1	118634485	118634485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgaaagtaatatggaGggcagtcattatctcttaaa	11	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118634485	T	T	118634485	1	4	9	0	1	0	0	0	0	0	0	0	15095	1015	35	2		2	SPAG17	1	118634485	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5213	118634485	130616136	1104	9255											
SPAG17	200162	broad.mit.edu	37	chr1	118657949	118657949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccttcttttcattttccCgtcgctgttggtccttaaat	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118657949	A	A	118657949	3	1	9	1	0	0	0	0	1	0	0	0	15095	652	23	1	6420	1	SPAG17	1	118657949	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23464	118657949	130592672	1105	9256											
SPAG17	200162	broad.mit.edu	37	chr1	118727659	118727659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggcctctggcattgccGggggcagggagggcttaaag	19	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118727659	T	T	118727659	1	4	9	0	1	0	0	0	0	0	0	0	15095	1131	39	1		1	SPAG17	1	118727659	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	69710	118727659	130522962	1106	9257											
TBX15	6913	broad.mit.edu	37	chr1	119427370	119427370	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctttaaaccatgtgcacGgacatctgggaggaggagcc	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119427370	T	T	119427370	2	4	9	1	0	0	0	0	0	0	0	1	15774	1103	39	1		1	TBX15	1	119427370	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	699711	119427370	129823251	1107	9258											
TBX15	6913	broad.mit.edu	37	chr1	119441615	119441615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccactctgtccctggccCtatcactaagcagaggcctt	7	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119441615	A	A	119441615	1	1	9	0	1	0	0	0	0	0	0	0	15774	696	24	2		2	TBX15	1	119441615	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14245	119441615	129809006	1108	9259											
TBX15	6913	broad.mit.edu	37	chr1	119467381	119467381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgtatataaactcttGggggcacaggggaatcagca	14	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119467381	T	T	119467381	3	4	9	1	0	0	0	0	1	0	0	0	15774	1348	47	2	1247	2	TBX15	1	119467381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25766	119467381	129783240	1109	9260											
WARS2	10352	broad.mit.edu	37	chr1	119575670	119575670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaatttcacgcttaattGgggcaaacttctcaatcaca	5	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119575670	T	T	119575670	3	4	9	1	0	0	0	0	1	0	0	0	17377	1348	47	2	139	2	WARS2	1	119575670	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108289	119575670	129674951	1110	9261											
WARS2	10352	broad.mit.edu	37	chr1	119575732	119575732	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcgagcagtgttcatgccCgcgctgcggcgcaccacttc	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119575732	A	A	119575732	2	1	9	1	0	0	0	0	0	0	0	1	17377	639	23	1		1	WARS2	1	119575732	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	119575732	129674889	1111	9262											
WARS2	10352	broad.mit.edu	37	chr1	119575922	119575922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacggtggccagtttgtcaGggtctgatttcgacattttg	14	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119575922	T	T	119575922	3	4	9	1	0	0	0	0	1	0	0	0	17377	1000	35	2	391	2	WARS2	1	119575922	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	190	119575922	129674699	1112	9263											
WARS2	10352	broad.mit.edu	37	chr1	119575959	119575959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcagaaggatcacgtaGggattttaccttcttcatgg	11	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119575959	T	T	119575959	3	4	9	1	0	0	0	0	1	0	0	0	17377	991	35	2	428	2	WARS2	1	119575959	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	119575959	129674662	1113	9264											
WARS2	10352	broad.mit.edu	37	chr1	119576013	119576013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaccaacacacacataccCaaaacaaaaacaaaacaaac	0	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119576013	A	A	119576013	1	1	9	0	1	0	0	0	0	0	0	0	17377	608	21	2		2	WARS2	1	119576013	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	119576013	129674608	1114	9265											
WARS2	10352	broad.mit.edu	37	chr1	119576065	119576065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtacacacagacagttccCaacttgcaatggtttgaatt	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119576065	A	A	119576065	1	1	9	0	1	0	0	0	0	0	0	0	17377	609	21	2		2	WARS2	1	119576065	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	119576065	129674556	1115	9266											
WARS2	10352	broad.mit.edu	37	chr1	119576751	119576751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcactggaaagaactcccCatacttcttgttgaaacctt	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119576751	A	A	119576751	3	1	9	1	0	0	0	0	1	0	0	0	17377	594	21	2	518	2	WARS2	1	119576751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	686	119576751	129673870	1116	9267											
WARS2	10352	broad.mit.edu	37	chr1	119584867	119584867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgagtatgtataagactGggctgaactctcttcttact	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119584867	T	T	119584867	1	4	9	0	1	0	0	0	0	0	0	0	17377	1363	47	2		2	WARS2	1	119584867	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8116	119584867	129665754	1117	9268											
WARS2	10352	broad.mit.edu	37	chr1	119619214	119619214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgaatgccggaaaatactCgcttcttgctgtctttctgg	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119619214	A	A	119619214	3	1	9	1	0	0	0	0	1	0	0	0	17377	884	31	3	1024	3	WARS2	1	119619214	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34347	119619214	129631407	1118	9269											
WARS2	10352	broad.mit.edu	37	chr1	119619276	119619276	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttttgaggcagaatccCatgaatcctatgcccatgtt	8	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119619276	A	A	119619276	1	1	9	0	1	0	0	0	0	0	0	0	17377	609	21	2		2	WARS2	1	119619276	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	119619276	129631345	1119	9270											
WARS2	10352	broad.mit.edu	37	chr1	119627754	119627754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagaacgcccgttgtacGggctagaaagtgtgcctgag	13	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119627754	T	T	119627754	1	4	9	0	1	0	0	0	0	0	0	0	17377	1131	39	1		1	WARS2	1	119627754	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8478	119627754	129622867	1120	9271											
WARS2	10352	broad.mit.edu	37	chr1	119628458	119628458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcataaggaagccctccCaggaagatccaggcactgtc	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119628458	A	A	119628458	1	1	9	0	1	0	0	0	0	0	0	0	17377	609	21	2		2	WARS2	1	119628458	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	704	119628458	129622163	1121	9272											
HAO2	51179	broad.mit.edu	37	chr1	119923430	119923430	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctaaggtggtgtgtgtacAgtggaggagaagatataaga	16	2	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119923430	T	T	119923430	1	4	9	0	1	0	0	0	0	0	0	0	7018	203	7	5		5	HAO2	1	119923430	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	294972	119923430	129327191	1122	9273											
HAO2	51179	broad.mit.edu	37	chr1	119923668	119923668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctgaagtgttctcactGggtttggtttggttttgttt	12	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119923668	T	T	119923668	1	4	9	0	1	0	0	0	0	0	0	0	7018	1363	47	2		2	HAO2	1	119923668	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	238	119923668	129326953	1123	9274											
HAO2	51179	broad.mit.edu	37	chr1	119923714	119923714	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaaggtccagaaatgtcCttggtgtgtttgacagactt	12	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119923714	A	A	119923714	2	1	9	1	0	0	0	0	0	0	0	1	7018	668	24	2		2	HAO2	1	119923714	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	46	119923714	129326907	1124	9275											
HAO2	51179	broad.mit.edu	37	chr1	119923742	119923742	+	Missense_Mutation	SNP	C	A	A													gtttgacagactttcaggccCatgcgcgagagcagctgtct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119923742	A	A	119923742	3	1	9	1	0	0	0	0	1	0	0	0	7018	594	21	2	36	2	HAO2	1	119923742	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	119923742	129326879	1125	9276	41	2									
HAO2	51179	broad.mit.edu	37	chr1	119923749	119923749	+	Missense_Mutation	SNP	G	T	T													agactttcaggcccatgcgcGagagcagctgtctaagtcaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119923749	T	T	119923749	3	4	9	1	0	0	0	0	1	0	0	0	7018	1058	37	3	43	3	HAO2	1	119923749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	119923749	129326872	1126	9277	41	2									
HAO2	51179	broad.mit.edu	37	chr1	119923773	119923773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgtctaagtcaactcGggattttattgaaggtggag	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119923773	T	T	119923773	3	4	9	1	0	0	0	0	1	0	0	0	7018	1116	39	1	67	1	HAO2	1	119923773	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	119923773	129326848	1127	9278											
HAO2	51179	broad.mit.edu	37	chr1	119923812	119923812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagatgacagcatcacgcGggatgacaacattgcagcat	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119923812	T	T	119923812	3	4	9	1	0	0	0	0	1	0	0	0	7018	1116	39	1	106	1	HAO2	1	119923812	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	119923812	129326809	1128	9279											
HAO2	51179	broad.mit.edu	37	chr1	119929425	119929425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgtttccaaccatggtGggaggcagcttgatgaggtt	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119929425	T	T	119929425	3	4	9	1	0	0	0	0	1	0	0	0	7018	1348	47	2	756	2	HAO2	1	119929425	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5613	119929425	129321196	1129	9280											
HAO2	51179	broad.mit.edu	37	chr1	119929478	119929478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaggattacttcagagaaGggtgtgtttgtgagtgctgt	15	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119929478	T	T	119929478	1	4	9	0	1	0	0	0	0	0	0	0	7018	1015	35	2		2	HAO2	1	119929478	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	119929478	129321143	1130	9281											
HAO2	51179	broad.mit.edu	37	chr1	119935233	119935233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctgtctgtctgcctcGggagcagggtgaacatggtg	15	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119935233	T	T	119935233	1	4	9	0	1	0	0	0	0	0	0	0	7018	1131	39	1		1	HAO2	1	119935233	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5755	119935233	129315388	1131	9282											
HSD3B2	3284	broad.mit.edu	37	chr1	119964426	119964426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcatcatgctcttcgtGggcaggtacccagctactgt	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119964426	T	T	119964426	1	4	9	0	1	0	0	0	0	0	0	0	7458	1363	47	2		2	HSD3B2	1	119964426	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29193	119964426	129286195	1132	9283			6	9	1798100	6	6	733	N	G_C	8.05134e-05
HSD3B2	3284	broad.mit.edu	37	chr1	119964448	119964448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtacccagctactgttGgaggcctgtgtccaagccag	13	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119964448	T	T	119964448	3	4	9	1	0	0	0	0	1	0	0	0	7458	1339	47	2	334	2	HSD3B2	1	119964448	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	119964448	129286173	1133	9284			6	9	1798100	6	6	733	N	G_C	8.05134e-05
HSD3B2	3284	broad.mit.edu	37	chr1	119964588	119964588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatggcccactccataccCgtacagcaaaaagcttgctg	7	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119964588	A	A	119964588	3	1	9	1	0	0	0	0	1	0	0	0	7458	652	23	1	474	1	HSD3B2	1	119964588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140	119964588	129286033	1134	9285			6	9	1798100	6	6	733	N	G_C	8.05134e-05
HSD3B2	3284	broad.mit.edu	37	chr1	119964695	119964695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagacccacatatatctatGgggaaggaggcccattcctt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119964695	T	T	119964695	3	4	9	1	0	0	0	0	1	0	0	0	7458	1348	47	2	581	2	HSD3B2	1	119964695	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107	119964695	129285926	1135	9286			6	9	1798100	6	6	733	N	G_C	8.05134e-05
HSD3B2	3284	broad.mit.edu	37	chr1	119964956	119964956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcaaagagtttggcctcCgccttgattccagatggagc	12	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119964956	A	A	119964956	3	1	9	1	0	0	0	0	1	0	0	0	7458	652	23	1	842	1	HSD3B2	1	119964956	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	261	119964956	129285665	1136	9287			6	9	1798100	6	6	733	N	G_C	8.05134e-05
HSD3B2	3284	broad.mit.edu	37	chr1	119965158	119965158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtataagccactctacagctGggaggaagccaagcagaaaa	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119965158	T	T	119965158	3	4	9	1	0	0	0	0	1	0	0	0	7458	1357	47	2	1044	2	HSD3B2	1	119965158	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	202	119965158	129285463	1137	9288			6	9	1798100	6	6	733	N	G_C	8.05134e-05
HSD3B2	3284	broad.mit.edu	37	chr1	119977697	119977697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacccaatacagccaaatcCgttgactcaggccctcaact	5	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119977697	A	A	119977697	1	1	9	0	1	0	0	0	0	0	0	0	7458	667	23	1		1	HSD3B2	1	119977697	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12539	119977697	129272924	1138	9289											
HSD3B1	3283	broad.mit.edu	37	chr1	120050160	120050160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggacagaggatcatcCgcctcttggtgaaggagaag	14	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120050160	A	A	120050160	3	1	9	1	0	0	0	0	1	0	0	0	7457	652	23	1	63	1	HSD3B1	1	120050160	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72463	120050160	129200461	1139	9290											
HSD3B1	3283	broad.mit.edu	37	chr1	120054211	120054211	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcctgccaggacgtctcGgtcatcatccacaccgcctg	10	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120054211	T	T	120054211	2	4	9	1	0	0	0	0	0	0	0	1	7457	1103	39	1		1	HSD3B1	1	120054211	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4051	120054211	129196410	1140	9291											
HSD3B1	3283	broad.mit.edu	37	chr1	120056462	120056462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttcatggacaggtaccCagctcctgttagaggcctgt	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120056462	A	A	120056462	3	1	9	1	0	0	0	0	1	0	0	0	7457	595	21	2	326	2	HSD3B1	1	120056462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2251	120056462	129194159	1141	9292											
HSD3B1	3283	broad.mit.edu	37	chr1	120056657	120056657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtactggcggctaacGggtggaatctgaaaaacggc	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120056657	T	T	120056657	3	4	9	1	0	0	0	0	1	0	0	0	7457	1116	39	1	521	1	HSD3B1	1	120056657	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	195	120056657	129193964	1142	9293											
HSD3B1	3283	broad.mit.edu	37	chr1	120057014	120057014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggagctttcctttatccCtgatgtattggattggcttc	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120057014	A	A	120057014	3	1	9	1	0	0	0	0	1	0	0	0	7457	680	24	2	878	2	HSD3B1	1	120057014	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	357	120057014	129193607	1143	9294											
ZNF697	90874	broad.mit.edu	37	chr1	120168767	120168767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccaggaatccctgctcCagaaaaacacaaagaaaggt	9	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120168767	A	A	120168767	1	1	9	0	1	0	0	0	0	0	0	0	18227	609	21	2		2	ZNF697	1	120168767	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	111753	120168767	129081854	1144	9295											
PHGDH	26227	broad.mit.edu	37	chr1	120263834	120263834	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctctgccaccaaggtgacCgctgatgtcatcaacgcagc	10	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120263834	A	A	120263834	2	1	9	1	0	0	0	0	0	0	0	1	11936	639	23	1		1	PHGDH	1	120263834	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95067	120263834	128986787	1145	9296											
PHGDH	26227	broad.mit.edu	37	chr1	120284386	120284386	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtagcttctctctgtccCcaggaacatccctgaagaat	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120284386	G	G	120284386	1	3	9	0	1	0	0	0	0	0	0	0	11936	638	22	4		4	PHGDH	1	120284386	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20552	120284386	128966235	1146	9297											
HMGCS2	3158	broad.mit.edu	37	chr1	120298101	120298101	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgaggtgtacatgttcCcattgtgagtggagaggtaa	16	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120298101	A	A	120298101	3	1	9	1	0	0	0	0	1	0	0	0	7300	623	22	2	406	2	HMGCS2	1	120298101	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13715	120298101	128952520	1147	9298											
HMGCS2	3158	broad.mit.edu	37	chr1	120298220	120298221	+	Splice_Site	DNP	CC	AA	AA													gtgtcttccagctttagcccCctgtgaggtagccagaggta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	120298221	AA	AA	120298220	5	1	9	1	0	0	0	0	0	0	1	0	7300	637	22	2	525	2	HMGCS2	1	120298220	Splice_Site	DNP	CC	TCGA-05-4396-01A-21D-1855-08	119	120298220	128952401	1148	9299											
REG4	83998	broad.mit.edu	37	chr1	120337203	120337203	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcagaaaggaagaggacGgggctgtgcaggagttagca	17	6	0	2	rs80287294		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120337203	T	T	120337203	1	4	9	0	1	0	0	0	0	0	0	0	13322	1131	39	1		1	REG4	1	120337203	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	38983	120337203	128913418	1149	9300											
REG4	83998	broad.mit.edu	37	chr1	120337249	120337249	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattcttgctctatggtcGgtacttgcacaggaagtgtt	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120337249	T	T	120337249	2	4	9	1	0	0	0	0	0	0	0	1	13322	1124	39	1		1	REG4	1	120337249	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46	120337249	128913372	1150	9301											
REG4	83998	broad.mit.edu	37	chr1	120337296	120337296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcattcgttgctgctcCaagttaaaaagtctgtaaga	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120337296	A	A	120337296	3	1	9	1	0	0	0	0	1	0	0	0	13322	595	21	2	58	2	REG4	1	120337296	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	120337296	128913325	1151	9302											
REG4	83998	broad.mit.edu	37	chr1	120341200	120341200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtacagatacatggccCcatcaatccactgccactgc	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120341200	A	A	120341200	3	1	9	1	0	0	0	0	1	0	0	0	13322	623	22	2	155	2	REG4	1	120341200	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3904	120341200	128909421	1152	9303											
REG4	83998	broad.mit.edu	37	chr1	120342355	120342355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgaggttaccttctgtGggtcgtgcaggccaatccat	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120342355	T	T	120342355	3	4	9	1	0	0	0	0	1	0	0	0	13322	1348	47	2	192	2	REG4	1	120342355	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1155	120342355	128908266	1153	9304											
REG4	83998	broad.mit.edu	37	chr1	120342455	120342455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaggatagatgccaggtGggctccgtttccgtaagact	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120342455	T	T	120342455	3	4	9	1	0	0	0	0	1	0	0	0	13322	1348	47	2	292	2	REG4	1	120342455	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	100	120342455	128908166	1154	9305											
NBPF7	343505	broad.mit.edu	37	chr1	120381935	120381935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgggttggagtcagaaGggccatggctatttgaataa	16	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120381935	T	T	120381935	3	4	9	1	0	0	0	0	1	0	0	0	10293	1000	35	2	570	2	NBPF7	1	120381935	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39480	120381935	128868686	1155	9306											
NBPF7	343505	broad.mit.edu	37	chr1	120381994	120381994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagtcctcagggacttcCttttcttcagccttctgctc	8	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120381994	A	A	120381994	3	1	9	1	0	0	0	0	1	0	0	0	10293	680	24	2	629	2	NBPF7	1	120381994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	120381994	128868627	1156	9307											
NBPF7	343505	broad.mit.edu	37	chr1	120382882	120382882	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattattcagtcttacctGggagcaggtgattcctgtac	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120382882	T	T	120382882	2	4	9	1	0	0	0	0	0	0	0	1	10293	1335	47	2		2	NBPF7	1	120382882	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	888	120382882	128867739	1157	9308											
NBPF7	343505	broad.mit.edu	37	chr1	120384011	120384011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgtggccaccttacctGggctgagcttgtggacaagg	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120384011	T	T	120384011	3	4	9	1	0	0	0	0	1	0	0	0	10293	1348	47	2	737	2	NBPF7	1	120384011	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1129	120384011	128866610	1158	9309											
NBPF7	343505	broad.mit.edu	37	chr1	120384161	120384161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggcatctctcccttccCgtaacttctcccttaactgg	8	15	2	0	rs111518894	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120384161	A	A	120384161	3	1	9	1	0	0	0	0	1	0	0	0	10293	652	23	1	887	1	NBPF7	1	120384161	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	150	120384161	128866460	1159	9310											
NBPF7	343505	broad.mit.edu	37	chr1	120385043	120385043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccacctgcctgtcccacGgggccccctcacctgagctc	9	21	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120385043	T	T	120385043	1	4	9	0	1	0	0	0	0	0	0	0	10293	1131	39	1		1	NBPF7	1	120385043	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	882	120385043	128865578	1160	9311											
ADAM30	11085	broad.mit.edu	37	chr1	120436570	120436570	+	3'UTR	SNP	G	T	T													atgagcctgtgttactgaatGagtatggattgcccggttac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120436570	T	T	120436570	1	4	9	0	1	0	0	0	0	0	0	0	248	1305	45	3		3	ADAM30	1	120436570	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	51527	120436570	128814051	1161	9312	42	2									
ADAM30	11085	broad.mit.edu	37	chr1	120436576	120436576	+	3'UTR	SNP	G	T	T													ctgtgttactgaatgagtatGgattgcccggttactttttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120436576	T	T	120436576	1	4	9	0	1	0	0	0	0	0	0	0	248	1363	47	2		2	ADAM30	1	120436576	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	120436576	128814045	1162	9313	42	2									
ADAM30	11085	broad.mit.edu	37	chr1	120436737	120436737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgttttagattcttcCtgtacagtttttgttttaga	7	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120436737	A	A	120436737	3	1	9	1	0	0	0	0	1	0	0	0	248	680	24	2	153	2	ADAM30	1	120436737	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	161	120436737	128813884	1163	9314											
ADAM30	11085	broad.mit.edu	37	chr1	120437808	120437808	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttagacatgttgctccCgaagagatatgtttaaaaaa	7	5	0	2	rs141390897	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120437808	A	A	120437808	2	1	9	1	0	0	0	0	0	0	0	1	248	639	23	1		1	ADAM30	1	120437808	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1071	120437808	128812813	1164	9315											
ADAM30	11085	broad.mit.edu	37	chr1	120438458	120438458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagccacaaacctgattccCaaactgctctttcttcagga	5	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120438458	A	A	120438458	3	1	9	1	0	0	0	0	1	0	0	0	248	594	21	2	1874	2	ADAM30	1	120438458	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	650	120438458	128812163	1165	9316											
NOTCH2	4853	broad.mit.edu	37	chr1	120457987	120457987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtgtgtcccaggtcccCgctgacctcctccagcaccc	8	19	0	1	rs145366664		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120457987	A	A	120457987	3	1	9	1	0	0	0	0	1	0	0	0	10643	652	23	1	61	1	NOTCH2	1	120457987	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19529	120457987	128792634	1166	9317											
NOTCH2	4853	broad.mit.edu	37	chr1	120458306	120458306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagccacactgggcaaacGggccatttctggaatctggt	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120458306	T	T	120458306	3	4	9	1	0	0	0	0	1	0	0	0	10643	1116	39	1	380	1	NOTCH2	1	120458306	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	319	120458306	128792315	1167	9318											
NOTCH2	4853	broad.mit.edu	37	chr1	120458346	120458346	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatggtgggcagggggccCgcaacagctggagggcaggt	19	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120458346	A	A	120458346	2	1	9	1	0	0	0	0	0	0	0	1	10643	639	23	1		1	NOTCH2	1	120458346	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	120458346	128792275	1168	9319											
NOTCH2	4853	broad.mit.edu	37	chr1	120458452	120458452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatggggggcaagggctccCgaggggtggttatgtgcttc	18	8	0	0	rs140832430		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120458452	A	A	120458452	3	1	9	1	0	0	0	0	1	0	0	0	10643	652	23	1	526	1	NOTCH2	1	120458452	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	120458452	128792169	1169	9320											
NOTCH2	4853	broad.mit.edu	37	chr1	120460223	120460223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagctgtaaggagaaacGggaatgggcttataactgag	15	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120460223	T	T	120460223	1	4	9	0	1	0	0	0	0	0	0	0	10643	1131	39	1		1	NOTCH2	1	120460223	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1771	120460223	128790398	1170	9321											
NOTCH2	4853	broad.mit.edu	37	chr1	120460308	120460308	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttgtcctgcatgtctcGgttggccccatttttcaaca	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120460308	T	T	120460308	2	4	9	1	0	0	0	0	0	0	0	1	10643	1124	39	1		1	NOTCH2	1	120460308	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85	120460308	128790313	1171	9322											
NOTCH2	4853	broad.mit.edu	37	chr1	120460367	120460367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattattgacagcagctgccCagtgaagagcagattttcct	9	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120460367	A	A	120460367	3	1	9	1	0	0	0	0	1	0	0	0	10643	595	21	2	1475	2	NOTCH2	1	120460367	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	120460367	128790254	1172	9323											
NOTCH2	4853	broad.mit.edu	37	chr1	120462050	120462050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgcttggcagcatcagccCgtgagtagcgggctgcaagg	16	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120462050	A	A	120462050	3	1	9	1	0	0	0	0	1	0	0	0	10643	652	23	1	1765	1	NOTCH2	1	120462050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1683	120462050	128788571	1173	9324											
NOTCH2	4853	broad.mit.edu	37	chr1	120467868	120467868	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtggttaggagcaagaacGagaaactgaagtgtgttagt	15	3	0	3	rs142118472	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120467868	T	T	120467868	1	4	9	0	1	0	0	0	0	0	0	0	10643	1073	37	3		3	NOTCH2	1	120467868	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5818	120467868	128782753	1174	9325											
NOTCH2	4853	broad.mit.edu	37	chr1	120467898	120467898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgttagtgacagtcccCttcagttctggaaaacgtga	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120467898	A	A	120467898	1	1	9	0	1	0	0	0	0	0	0	0	10643	696	24	2		2	NOTCH2	1	120467898	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	120467898	128782723	1175	9326											
NOTCH2	4853	broad.mit.edu	37	chr1	120467981	120467981	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaaacaggcactcgacCgtgttgcacagctcatcaca	8	13	3	0	rs61756001		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120467981	A	A	120467981	2	1	9	1	0	0	0	0	0	0	0	1	10643	639	23	1		1	NOTCH2	1	120467981	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	120467981	128782640	1176	9327											
NOTCH2	4853	broad.mit.edu	37	chr1	120478038	120478038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccctgaacactaagaatGgatttataacttaagacaat	5	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120478038	T	T	120478038	1	4	9	0	1	0	0	0	0	0	0	0	10643	1363	47	2		2	NOTCH2	1	120478038	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10057	120478038	128772583	1177	9328											
NOTCH2	4853	broad.mit.edu	37	chr1	120478075	120478075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgccctggatggaaaatGgataaggatgatttcatacc	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120478075	T	T	120478075	1	4	9	0	1	0	0	0	0	0	0	0	10643	1363	47	2		2	NOTCH2	1	120478075	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	120478075	128772546	1178	9329											
NOTCH2	4853	broad.mit.edu	37	chr1	120478097	120478097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggatgatttcatacccCgagtgcctggtgggcaagag	13	8	1	2	rs138122751		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120478097	A	A	120478097	3	1	9	1	0	0	0	0	1	0	0	0	10643	652	23	1	3814	1	NOTCH2	1	120478097	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	120478097	128772524	1179	9330											
NOTCH2	4853	broad.mit.edu	37	chr1	120479946	120479946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcactgcatgttgcccCgtgctggcaggggttggacg	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120479946	A	A	120479946	3	1	9	1	0	0	0	0	1	0	0	0	10643	652	23	1	3990	1	NOTCH2	1	120479946	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1849	120479946	128770675	1180	9331											
NOTCH2	4853	broad.mit.edu	37	chr1	120483192	120483192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattacctgacagtttttccCagtgtagcccagggggcagc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120483192	A	A	120483192	3	1	9	1	0	0	0	0	1	0	0	0	10643	594	21	2	4310	2	NOTCH2	1	120483192	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3246	120483192	128767429	1181	9332											
NOTCH2	4853	broad.mit.edu	37	chr1	120483250	120483250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccatcaacacacgttccCtcattcaggcatggatgaga	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120483250	A	A	120483250	3	1	9	1	0	0	0	0	1	0	0	0	10643	680	24	2	4368	2	NOTCH2	1	120483250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	120483250	128767371	1182	9333											
NOTCH2	4853	broad.mit.edu	37	chr1	120506189	120506189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccaaacataaacagagtGggcttacctgacgtgcctgg	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120506189	T	T	120506189	1	4	9	0	1	0	0	0	0	0	0	0	10643	1363	47	2		2	NOTCH2	1	120506189	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22939	120506189	128744432	1183	9334											
NOTCH2	4853	broad.mit.edu	37	chr1	120506321	120506321	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatggcgcccatgtacccGggattgcagatgcaggtgta	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120506321	T	T	120506321	2	4	9	1	0	0	0	0	0	0	0	1	10643	1103	39	1		1	NOTCH2	1	120506321	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	132	120506321	128744300	1184	9335											
NOTCH2	4853	broad.mit.edu	37	chr1	120508127	120508127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcgatacactttgcccCattcagacacggagtactgg	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120508127	A	A	120508127	3	1	9	1	0	0	0	0	1	0	0	0	10643	594	21	2	5885	2	NOTCH2	1	120508127	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1806	120508127	128742494	1185	9336											
NOTCH2	4853	broad.mit.edu	37	chr1	120508138	120508138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgccccattcagacacGgagtactggaacagtcatca	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120508138	T	T	120508138	3	4	9	1	0	0	0	0	1	0	0	0	10643	1116	39	1	5896	1	NOTCH2	1	120508138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	120508138	128742483	1186	9337											
NOTCH2	4853	broad.mit.edu	37	chr1	120508181	120508181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaatctggcaaactggccCagtgaaacctcaaaaaggga	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120508181	A	A	120508181	3	1	9	1	0	0	0	0	1	0	0	0	10643	594	21	2	5939	2	NOTCH2	1	120508181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	120508181	128742440	1187	9338											
NOTCH2	4853	broad.mit.edu	37	chr1	120509047	120509047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttatccacacactgccCattgttcacacaagggttgc	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120509047	A	A	120509047	3	1	9	1	0	0	0	0	1	0	0	0	10643	594	21	2	6000	2	NOTCH2	1	120509047	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	866	120509047	128741574	1188	9339											
NOTCH2	4853	broad.mit.edu	37	chr1	120510201	120510201	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagtggaaggcgccatcCgtgttcacacattttcctgc	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120510201	A	A	120510201	2	1	9	1	0	0	0	0	0	0	0	1	10643	639	23	1		1	NOTCH2	1	120510201	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1154	120510201	128740420	1189	9340											
NOTCH2	4853	broad.mit.edu	37	chr1	120547961	120547961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattagttacctgtaaaccCgacttgacaggtgcactcat	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120547961	A	A	120547961	3	1	9	1	0	0	0	0	1	0	0	0	10643	652	23	1	7137	1	NOTCH2	1	120547961	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37760	120547961	128702660	1190	9341											
NOTCH2	4853	broad.mit.edu	37	chr1	120547990	120547990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcactcataggtatccCggctgagcatatggcatgtg	13	9	1	1	rs141031381	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120547990	A	A	120547990	3	1	9	1	0	0	0	0	1	0	0	0	10643	652	23	1	7166	1	NOTCH2	1	120547990	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	120547990	128702631	1191	9342											
FAM72B	653820	broad.mit.edu	37	chr1	120845996	120845996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttactttcttttctagtGggaacattgtaggttatcat	7	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120845996	T	T	120845996	3	4	9	1	0	0	0	0	1	0	0	0	5666	1362	47	2	242	2	FAM72B	1	120845996	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	298006	120845996	128404625	1192	9343											
FAM72B	653820	broad.mit.edu	37	chr1	120846027	120846027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttatcatgtgattgttcCatgtagttcctgtcttcctt	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120846027	A	A	120846027	3	1	9	1	0	0	0	0	1	0	0	0	5666	594	21	2	273	2	FAM72B	1	120846027	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	120846027	128404594	1193	9344											
FCGR1B	2210	broad.mit.edu	37	chr1	120927151	120927151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgctacgtggccccctGgggctccttccggtgcaccc	12	19	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120927151	T	T	120927151	3	4	9	1	0	0	0	0	1	0	0	0	5837	1357	47	2	17	2	FCGR1B	1	120927151	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81124	120927151	128323470	1194	9345											
PPIAL4G	644591	broad.mit.edu	37	chr1	143767732	143767732	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcctttctctccagtgctCagagcacgaaagttttctgc	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143767732	A	A	143767732	2	1	9	1	0	0	0	0	0	0	0	1	12419	813	29	3		3	PPIAL4G	1	143767732	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22840581	143767732	105482889	1195	9346											
NBPF9	400818	broad.mit.edu	37	chr1	144615209	144615209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacgagaaattgcgccccCagttggcagagaacaaacag	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144615209	A	A	144615209	3	1	9	1	0	0	0	0	1	0	0	0	10294	595	21	2	81	2	NBPF9	1	144615209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	847477	144615209	104635412	1196	9347											
NBPF9	400818	broad.mit.edu	37	chr1	144617265	144617265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcaggtgaggggaaccCgtagggggaggcaggcgggt	22	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144617265	A	A	144617265	1	1	9	0	1	0	0	0	0	0	0	0	10294	667	23	1		1	NBPF9	1	144617265	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2056	144617265	104633356	1197	9348											
NBPF9	400818	broad.mit.edu	37	chr1	144618031	144618031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgttgcaatatttgaacGgatcactcaaccctttctac	5	12	4	1	rs75744363	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144618031	T	T	144618031	1	4	9	0	1	0	0	0	0	0	0	0	10294	1131	39	1		1	NBPF9	1	144618031	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	766	144618031	104632590	1198	9349											
NBPF9	400818	broad.mit.edu	37	chr1	144618114	144618114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggttcactctcaggaacGagagctgacgcagttaaagg	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144618114	T	T	144618114	3	4	9	1	0	0	0	0	1	0	0	0	10294	1058	37	3	319	3	NBPF9	1	144618114	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	144618114	104632507	1199	9350											
NBPF9	400818	broad.mit.edu	37	chr1	144619435	144619435	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccaggtaacactgaatactCaggagcaagtaatgggtggt	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144619435	A	A	144619435	1	1	9	0	1	0	0	0	0	0	0	0	10294	841	29	3		3	NBPF9	1	144619435	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1321	144619435	104631186	1200	9351											
NBPF9	400818	broad.mit.edu	37	chr1	144619449	144619449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactcaggagcaagtaatGggtggtaacatatgaaaatg	11	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144619449	T	T	144619449	1	4	9	0	1	0	0	0	0	0	0	0	10294	1363	47	2		2	NBPF9	1	144619449	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	144619449	104631172	1201	9352											
NBPF9	400818	broad.mit.edu	37	chr1	144619825	144619825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccagctaggactccctGgggtccaatccctctgtgtt	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144619825	T	T	144619825	1	4	9	0	1	0	0	0	0	0	0	0	10294	1363	47	2		2	NBPF9	1	144619825	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	376	144619825	104630796	1202	9353											
NBPF9	400818	broad.mit.edu	37	chr1	144828482	144828482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttacttctgaaatctagtGgggctctgtggtgtctgatt	12	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144828482	T	T	144828482	1	4	9	0	1	0	0	0	0	0	0	0	10294	1363	47	2		2	NBPF9	1	144828482	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	208657	144828482	104422139	1203	9354											
PDE4DIP	9659	broad.mit.edu	37	chr1	144854472	144854472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcacaagtggggcatcGggaagactgcctgtttcttc	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144854472	T	T	144854472	1	4	9	0	1	0	0	0	0	0	0	0	11737	1131	39	1		1	PDE4DIP	1	144854472	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25990	144854472	104396149	1204	9355											
PDE4DIP	9659	broad.mit.edu	37	chr1	144854618	144854618	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctcctgtttggatactttGgttctcagttccagaagttc	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144854618	T	T	144854618	2	4	9	1	0	0	0	0	0	0	0	1	11737	1335	47	2		2	PDE4DIP	1	144854618	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	146	144854618	104396003	1205	9356											
PDE4DIP	9659	broad.mit.edu	37	chr1	144854657	144854657	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctttctgttgattctccCtggataagaggaacagactc	8	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144854657	A	A	144854657	5	1	9	1	0	0	0	0	0	0	1	0	11737	695	24	2	239	2	PDE4DIP	1	144854657	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	144854657	104395964	1206	9357											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857647	144857647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgggcgtttctgagccaGgagtagaggaagcagagctg	16	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144857647	T	T	144857647	3	4	9	1	0	0	0	0	1	0	0	0	11737	1000	35	2	657	2	PDE4DIP	1	144857647	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2990	144857647	104392974	1207	9358											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857696	144857696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagctggggaattcatacCaacatcccggactggagggg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144857696	A	A	144857696	3	1	9	1	0	0	0	0	1	0	0	0	11737	594	21	2	706	2	PDE4DIP	1	144857696	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	144857696	104392925	1208	9359											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857764	144857764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccacagttttcaggagccCtggaacacactgcacatgaa	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144857764	A	A	144857764	1	1	9	0	1	0	0	0	0	0	0	0	11737	696	24	2		2	PDE4DIP	1	144857764	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	144857764	104392857	1209	9360											
PDE4DIP	9659	broad.mit.edu	37	chr1	144860030	144860030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtctggtaacattgaccCaagtatttccaagcacttgt	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144860030	A	A	144860030	1	1	9	0	1	0	0	0	0	0	0	0	11737	609	21	2		2	PDE4DIP	1	144860030	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2266	144860030	104390591	1210	9361											
PDE4DIP	9659	broad.mit.edu	37	chr1	144863293	144863293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagggcaaaaagctcatGgggtgaggggagaagaacac	16	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144863293	T	T	144863293	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	144863293	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3263	144863293	104387328	1211	9362											
PDE4DIP	9659	broad.mit.edu	37	chr1	144863465	144863465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagggagaggcaaggccCactgagatggcagagctact	15	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144863465	A	A	144863465	1	1	9	0	1	0	0	0	0	0	0	0	11737	609	21	2		2	PDE4DIP	1	144863465	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	172	144863465	104387156	1212	9363											
PDE4DIP	9659	broad.mit.edu	37	chr1	144864121	144864121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctaccttctctgtcaatGggtcccctcttacctggagt	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144864121	T	T	144864121	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	144864121	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	656	144864121	104386500	1213	9364											
PDE4DIP	9659	broad.mit.edu	37	chr1	144864155	144864155	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagtcgttttcctggagGgaaagacgttcctccctgaa	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144864155	T	T	144864155	2	4	9	1	0	0	0	0	0	0	0	1	11737	1219	43	2		2	PDE4DIP	1	144864155	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	144864155	104386466	1214	9365											
PDE4DIP	9659	broad.mit.edu	37	chr1	144865857	144865857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcttcgattgtcttccCtgaggactctgttctcattg	9	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144865857	A	A	144865857	3	1	9	1	0	0	0	0	1	0	0	0	11737	681	24	2	1357	2	PDE4DIP	1	144865857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1702	144865857	104384764	1215	9366											
PDE4DIP	9659	broad.mit.edu	37	chr1	144865925	144865925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtagaagttagaagtGgatcctgtcccagaaagtag	12	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144865925	T	T	144865925	2	4	9	1	0	0	0	0	0	0	0	1	11737	1335	47	2		2	PDE4DIP	1	144865925	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68	144865925	104384696	1216	9367											
PDE4DIP	9659	broad.mit.edu	37	chr1	144866012	144866012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagatactgccccaaccCagcagaaaaccccaaggact	6	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144866012	A	A	144866012	1	1	9	0	1	0	0	0	0	0	0	0	11737	609	21	2		2	PDE4DIP	1	144866012	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	144866012	104384609	1217	9368											
PDE4DIP	9659	broad.mit.edu	37	chr1	144867925	144867925	+	Silent	SNP	G	T	T													ctgctttgtgctttacctgtGggtttggagttaagctggta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144867925	T	T	144867925	2	4	9	1	0	0	0	0	0	0	0	1	11737	1335	47	2		2	PDE4DIP	1	144867925	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1913	144867925	104382696	1218	9369	43	2									
PDE4DIP	9659	broad.mit.edu	37	chr1	144867931	144867931	+	Silent	SNP	G	T	T													tgtgctttacctgtgggtttGgagttaagctggtacacaga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144867931	T	T	144867931	2	4	9	1	0	0	0	0	0	0	0	1	11737	1335	47	2		2	PDE4DIP	1	144867931	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	144867931	104382690	1219	9370	43	2									
PDE4DIP	9659	broad.mit.edu	37	chr1	144873859	144873859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagatgaagcttctgccCcattggctgttgcatacctg	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144873859	A	A	144873859	1	1	9	0	1	0	0	0	0	0	0	0	11737	638	22	2		2	PDE4DIP	1	144873859	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5928	144873859	104376762	1220	9371											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874655	144874655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcagcctagacaaagatGgtaccacccagaaagtggag	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144874655	T	T	144874655	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	144874655	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	796	144874655	104375966	1221	9372											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874691	144874691	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggctacctgagtgactGggagaagctttcttctcttc	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144874691	T	T	144874691	2	4	9	1	0	0	0	0	0	0	0	1	11737	1335	47	2		2	PDE4DIP	1	144874691	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	144874691	104375930	1222	9373											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874726	144874726	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttcatagtgtgtgtactCgctgactatgtccatgtcag	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144874726	A	A	144874726	4	1	9	1	0	0	0	0	0	1	0	0	11737	893	31	3	2218	3	PDE4DIP	1	144874726	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	144874726	104375895	1223	9374											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874798	144874798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctgggagagcggtGggagtcagacaaggcatggc	20	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144874798	T	T	144874798	3	4	9	1	0	0	0	0	1	0	0	0	11737	1348	47	2	2290	2	PDE4DIP	1	144874798	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	72	144874798	104375823	1224	9375											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874839	144874839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggagggtgtgagggacCgagcatccagcttggcctgc	17	10	0	1	rs112593076	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144874839	A	A	144874839	3	1	9	1	0	0	0	0	1	0	0	0	11737	652	23	1	2331	1	PDE4DIP	1	144874839	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	144874839	104375782	1225	9376											
PDE4DIP	9659	broad.mit.edu	37	chr1	144875940	144875940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgaccctttgggcctcGgtcccaatctctttcccaga	7	17	1	2	rs79858727	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144875940	T	T	144875940	1	4	9	0	1	0	0	0	0	0	0	0	11737	1131	39	1		1	PDE4DIP	1	144875940	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1101	144875940	104374681	1226	9377											
PDE4DIP	9659	broad.mit.edu	37	chr1	144875981	144875981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctctgaattacctgaGggccagtggctcaagtccag	10	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144875981	T	T	144875981	3	4	9	1	0	0	0	0	1	0	0	0	11737	1000	35	2	2405	2	PDE4DIP	1	144875981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41	144875981	104374640	1227	9378											
PDE4DIP	9659	broad.mit.edu	37	chr1	144876075	144876075	+	Intron	SNP	C	A	A													ataagaaattaggctggtccCacttcccgcattacaaatgc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144876075	A	A	144876075	1	1	9	0	1	0	0	0	0	0	0	0	11737	609	21	2		2	PDE4DIP	1	144876075	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	144876075	104374546	1228	9379	44	2									
PDE4DIP	9659	broad.mit.edu	37	chr1	144876082	144876082	+	Intron	SNP	C	A	A													attaggctggtcccacttccCgcattacaaatgcaggagcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144876082	A	A	144876082	1	1	9	0	1	0	0	0	0	0	0	0	11737	667	23	1		1	PDE4DIP	1	144876082	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	144876082	104374539	1229	9380	44	2									
PDE4DIP	9659	broad.mit.edu	37	chr1	144877240	144877240	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtaggtaagacagttcccGggcctgatcctgaatcaggg	13	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144877240	T	T	144877240	2	4	9	1	0	0	0	0	0	0	0	1	11737	1115	39	1		1	PDE4DIP	1	144877240	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1158	144877240	104373381	1230	9381											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879084	144879084	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagcttctcttctagtcCattttttgggagctgggcct	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144879084	A	A	144879084	4	1	9	1	0	0	0	0	0	1	0	0	11737	603	21	2	2746	2	PDE4DIP	1	144879084	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1844	144879084	104371537	1231	9382											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879422	144879422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgactttccatataccCggaactcttcctgcttccct	4	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144879422	A	A	144879422	3	1	9	1	0	0	0	0	1	0	0	0	11737	652	23	1	3084	1	PDE4DIP	1	144879422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	338	144879422	104371199	1232	9383											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879440	144879440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggaactcttcctgcttcCctagctggttctccaagggc	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144879440	A	A	144879440	3	1	9	1	0	0	0	0	1	0	0	0	11737	623	22	2	3102	2	PDE4DIP	1	144879440	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	144879440	104371181	1233	9384											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879457	144879457	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctagctggttctccaaGggcttcctctcagaggaact	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144879457	T	T	144879457	2	4	9	1	0	0	0	0	0	0	0	1	11737	987	35	2		2	PDE4DIP	1	144879457	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17	144879457	104371164	1234	9385											
PDE4DIP	9659	broad.mit.edu	37	chr1	144880709	144880709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtgacagctgactccaGggaggggtgagccccacacc	13	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144880709	T	T	144880709	1	4	9	0	1	0	0	0	0	0	0	0	11737	1015	35	2		2	PDE4DIP	1	144880709	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1252	144880709	104369912	1235	9386											
PDE4DIP	9659	broad.mit.edu	37	chr1	144880778	144880778	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcccgttcagcctcattctCgcttcggccacaagtctcat	6	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144880778	A	A	144880778	4	1	9	1	0	0	0	0	0	1	0	0	11737	893	31	3	3266	3	PDE4DIP	1	144880778	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69	144880778	104369843	1236	9387											
PDE4DIP	9659	broad.mit.edu	37	chr1	144881484	144881484	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgagcaaagacagtggcttCtgatagcagcagcttctcct	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144881484	A	A	144881484	4	1	9	1	0	0	0	0	0	1	0	0	11737	922	32	3	3408	3	PDE4DIP	1	144881484	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	706	144881484	104369137	1237	9388											
PDE4DIP	9659	broad.mit.edu	37	chr1	144882848	144882848	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatctgctctttcagctcCgcattctcaaggcaaaggct	7	15	4	0	rs146547581	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144882848	A	A	144882848	2	1	9	1	0	0	0	0	0	0	0	1	11737	639	23	1		1	PDE4DIP	1	144882848	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1364	144882848	104367773	1238	9389											
PDE4DIP	9659	broad.mit.edu	37	chr1	144886114	144886114	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgatgtgggacactgaGgagaatcctgcttcctcaat	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144886114	T	T	144886114	2	4	9	1	0	0	0	0	0	0	0	1	11737	987	35	2		2	PDE4DIP	1	144886114	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3266	144886114	104364507	1239	9390											
PDE4DIP	9659	broad.mit.edu	37	chr1	144886256	144886256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttactgtcccctcccatcGgagaaggaggggaaaaagat	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144886256	T	T	144886256	3	4	9	1	0	0	0	0	1	0	0	0	11737	1116	39	1	4150	1	PDE4DIP	1	144886256	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	142	144886256	104364365	1240	9391											
PDE4DIP	9659	broad.mit.edu	37	chr1	144886377	144886377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggccattaaagaggaccCaagagaaacatgagattgca	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144886377	A	A	144886377	1	1	9	0	1	0	0	0	0	0	0	0	11737	609	21	2		2	PDE4DIP	1	144886377	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	121	144886377	104364244	1241	9392											
PDE4DIP	9659	broad.mit.edu	37	chr1	144892567	144892567	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcagtgcttgtatcttcGgtgtcatcccctgcagctgc	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144892567	T	T	144892567	2	4	9	1	0	0	0	0	0	0	0	1	11737	1103	39	1		1	PDE4DIP	1	144892567	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6190	144892567	104358054	1242	9393											
PDE4DIP	9659	broad.mit.edu	37	chr1	144903021	144903021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggctgcagtctgaccCgccagtgctcagtaggcatg	13	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144903021	A	A	144903021	1	1	9	0	1	0	0	0	0	0	0	0	11737	667	23	1		1	PDE4DIP	1	144903021	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10454	144903021	104347600	1243	9394											
PDE4DIP	9659	broad.mit.edu	37	chr1	144903191	144903191	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttccacctgcagagttcGgtctctctcagagctgatta	9	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144903191	T	T	144903191	2	4	9	1	0	0	0	0	0	0	0	1	11737	1124	39	1		1	PDE4DIP	1	144903191	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	170	144903191	104347430	1244	9395											
PDE4DIP	9659	broad.mit.edu	37	chr1	144904703	144904703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctcattgagccgactcCgttcatctactagtccttct	7	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144904703	A	A	144904703	3	1	9	1	0	0	0	0	1	0	0	0	11737	652	23	1	4541	1	PDE4DIP	1	144904703	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1512	144904703	104345918	1245	9396											
PDE4DIP	9659	broad.mit.edu	37	chr1	144904719	144904719	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccgttcatctactagtcCttctagcatcagcagcaact	5	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144904719	A	A	144904719	4	1	9	1	0	0	0	0	0	1	0	0	11737	690	24	2	4557	2	PDE4DIP	1	144904719	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	144904719	104345902	1246	9397											
PDE4DIP	9659	broad.mit.edu	37	chr1	144906120	144906120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgaagcaactttttccCgaagaagtaagacttcctgg	8	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144906120	A	A	144906120	3	1	9	1	0	0	0	0	1	0	0	0	11737	652	23	1	4641	1	PDE4DIP	1	144906120	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1401	144906120	104344501	1247	9398											
PDE4DIP	9659	broad.mit.edu	37	chr1	144916477	144916477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatgaaattaaagacttGggtcacagtcctcccaatct	7	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144916477	T	T	144916477	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	144916477	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10357	144916477	104334144	1248	9399											
PDE4DIP	9659	broad.mit.edu	37	chr1	144916792	144916792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagtcaaaatgattaccCcatactcctcaggataaaca	4	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144916792	A	A	144916792	1	1	9	0	1	0	0	0	0	0	0	0	11737	638	22	2		2	PDE4DIP	1	144916792	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	315	144916792	104333829	1249	9400											
PDE4DIP	9659	broad.mit.edu	37	chr1	144917557	144917557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctctctaagtcatgatctCgctctctcacagcaagacga	7	13	6	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144917557	A	A	144917557	3	1	9	1	0	0	0	0	1	0	0	0	11737	884	31	3	5635	3	PDE4DIP	1	144917557	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	765	144917557	104333064	1250	9401											
PDE4DIP	9659	broad.mit.edu	37	chr1	144917635	144917635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatttttcatctatagccCgctgcaaggaaaggaagact	9	8	2	2	rs148853334		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144917635	A	A	144917635	3	1	9	1	0	0	0	0	1	0	0	0	11737	666	23	1	5713	1	PDE4DIP	1	144917635	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	144917635	104332986	1251	9402											
PDE4DIP	9659	broad.mit.edu	37	chr1	144918865	144918865	+	Missense_Mutation	SNP	G	T	T													ctccttgtgactcagactatGgtttaggtgctggatgtttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144918865	T	T	144918865	3	4	9	1	0	0	0	0	1	0	0	0	11737	1348	47	2	5869	2	PDE4DIP	1	144918865	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1230	144918865	104331756	1252	9403	45	2									
PDE4DIP	9659	broad.mit.edu	37	chr1	144918871	144918871	+	Missense_Mutation	SNP	G	T	T													gtgactcagactatggtttaGgtgctggatgttttgttcct					rs146116377		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144918871	T	T	144918871	3	4	9	1	0	0	0	0	1	0	0	0	11737	991	35	2	5875	2	PDE4DIP	1	144918871	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	144918871	104331750	1253	9404	45	2									
PDE4DIP	9659	broad.mit.edu	37	chr1	144921837	144921837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatagttaatgatttacctGgttatgtttccaagaagcct	7	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144921837	T	T	144921837	3	4	9	1	0	0	0	0	1	0	0	0	11737	1357	47	2	6002	2	PDE4DIP	1	144921837	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2966	144921837	104328784	1254	9405											
PDE4DIP	9659	broad.mit.edu	37	chr1	144922473	144922473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacttgtctactttgaaGggaccaattgtttccacaca	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144922473	T	T	144922473	1	4	9	0	1	0	0	0	0	0	0	0	11737	1015	35	2		2	PDE4DIP	1	144922473	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	636	144922473	104328148	1255	9406											
PDE4DIP	9659	broad.mit.edu	37	chr1	144922505	144922505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacacaggtccttgattGgtaaatatgttacctcacgt	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144922505	T	T	144922505	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	144922505	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	144922505	104328116	1256	9407											
PDE4DIP	9659	broad.mit.edu	37	chr1	144922590	144922590	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcttttgagacgactcctGagcacactttagttcatagc	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144922590	T	T	144922590	3	4	9	1	0	0	0	0	1	0	0	0	11737	1299	45	3	6385	3	PDE4DIP	1	144922590	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85	144922590	104328031	1257	9408											
PDE4DIP	9659	broad.mit.edu	37	chr1	144923771	144923771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagactgctgagttatagtGgtctcatgtgaattcagctt	10	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144923771	T	T	144923771	2	4	9	1	0	0	0	0	0	0	0	1	11737	1335	47	2		2	PDE4DIP	1	144923771	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1181	144923771	104326850	1258	9409											
PDE4DIP	9659	broad.mit.edu	37	chr1	144930591	144930591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgttttgtatacctggaccCggagcggcaaataatcttca	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144930591	A	A	144930591	1	1	9	0	1	0	0	0	0	0	0	0	11737	652	23	1		1	PDE4DIP	1	144930591	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6820	144930591	104320030	1259	9410											
PDE4DIP	9659	broad.mit.edu	37	chr1	144931355	144931355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctcgcatcgggtaagacGgacatgtcaaccgtcccatt	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144931355	T	T	144931355	1	4	9	0	1	0	0	0	0	0	0	0	11737	1103	39	1		1	PDE4DIP	1	144931355	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	764	144931355	104319266	1260	9411											
PDE4DIP	9659	broad.mit.edu	37	chr1	144946708	144946708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctacaagcctctcctGggcagccaggctctgattca	9	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144946708	T	T	144946708	3	4	9	1	0	0	0	0	1	0	0	0	11737	1357	47	2	7786	2	PDE4DIP	1	144946708	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15353	144946708	104303913	1261	9412											
PDE4DIP	9659	broad.mit.edu	37	chr1	144952075	144952075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaatgtcttcggttgtGggcccataaagtcttagaaa	10	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144952075	T	T	144952075	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	144952075	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5367	144952075	104298546	1262	9413											
PDE4DIP	9659	broad.mit.edu	37	chr1	144994610	144994610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcttgtagatgtcctccCggctggcctcatacttctgt	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144994610	A	A	144994610	3	1	9	1	0	0	0	0	1	0	0	0	11737	652	23	1	8237	1	PDE4DIP	1	144994610	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42535	144994610	104256011	1263	9414											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015768	145015768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataataccatccataatccGgaccaatccatgggtcatat	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145015768	T	T	145015768	1	4	9	0	1	0	0	0	0	0	0	0	11737	1131	39	1		1	PDE4DIP	1	145015768	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21158	145015768	104234853	1264	9415											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015780	145015780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataatccggaccaatccatGggtcatatttttatcaggca	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145015780	T	T	145015780	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	145015780	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	145015780	104234841	1265	9416											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015829	145015829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatagtactgcttctaattGggataacaattatccactca	5	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145015829	T	T	145015829	1	4	9	0	1	0	0	0	0	0	0	0	11737	1363	47	2		2	PDE4DIP	1	145015829	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49	145015829	104234792	1266	9417											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015873	145015873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacttaccttctcaaagtctCgaagagcctgggtctgtacc	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145015873	A	A	145015873	3	1	9	1	0	0	0	0	1	0	0	0	11737	884	31	3	8376	3	PDE4DIP	1	145015873	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	145015873	104234748	1267	9418											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015960	145015960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccttttcaccacttctcCagatctgtgactgcactgga	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145015960	A	A	145015960	3	1	9	1	0	0	0	0	1	0	0	0	11737	595	21	2	8463	2	PDE4DIP	1	145015960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	145015960	104234661	1268	9419											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015981	145015981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctgtgactgcactggaGggcctcgatctttagtgtca	12	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145015981	T	T	145015981	3	4	9	1	0	0	0	0	1	0	0	0	11737	1000	35	2	8484	2	PDE4DIP	1	145015981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	145015981	104234640	1269	9420											
PDE4DIP	9659	broad.mit.edu	37	chr1	145021125	145021125	+	Silent	SNP	C	A	A													tccttacctgctgtgtgactCgttctgggtaccatctcccc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145021125	A	A	145021125	2	1	9	1	0	0	0	0	0	0	0	1	11737	871	31	3		3	PDE4DIP	1	145021125	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5144	145021125	104229496	1270	9421	46	2									
PDE4DIP	9659	broad.mit.edu	37	chr1	145021132	145021132	+	Missense_Mutation	SNP	G	T	T													ctgctgtgtgactcgttctgGgtaccatctccccatcatcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145021132	T	T	145021132	3	4	9	1	0	0	0	0	1	0	0	0	11737	1232	43	2	8539	2	PDE4DIP	1	145021132	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	145021132	104229489	1271	9422	46	2									
SEC22B	9554	broad.mit.edu	37	chr1	145109577	145109577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtgaagctgccttccCtaagacgttggcttttgcct	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145109577	A	A	145109577	3	1	9	1	0	0	0	0	1	0	0	0	14102	681	24	2	249	2	SEC22B	1	145109577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88445	145109577	104141044	1272	9423											
SEC22B	9554	broad.mit.edu	37	chr1	145109644	145109644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaacagcatggaaagaaGgtgcccactgtgtcccgacc	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145109644	T	T	145109644	3	4	9	1	0	0	0	0	1	0	0	0	14102	991	35	2	316	2	SEC22B	1	145109644	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67	145109644	104140977	1273	9424											
SEC22B	9554	broad.mit.edu	37	chr1	145112437	145112437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgaagaaacctaggctcCatcaacactgaattgcaaga	8	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145112437	A	A	145112437	2	1	9	1	0	0	0	0	0	0	0	1	14102	581	21	2		2	SEC22B	1	145112437	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2793	145112437	104138184	1274	9425											
NBPF9	400818	broad.mit.edu	37	chr1	145115682	145115682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaatgccttaatactttcGgtaaaatacttccagggact	6	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145115682	T	T	145115682	1	4	9	0	1	0	0	0	0	0	0	0	10294	1131	39	1		1	NBPF9	1	145115682	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3245	145115682	104134939	1275	9426											
NOTCH2NL	388677	broad.mit.edu	37	chr1	145273406	145273406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgccatatgctcagccGggatacctatgagtgcacct	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145273406	T	T	145273406	3	4	9	1	0	0	0	0	1	0	0	0	10644	1116	39	1	266	1	NOTCH2NL	1	145273406	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	157724	145273406	103977215	1276	9427											
NBPF10	100132406	broad.mit.edu	37	chr1	145281373	145281373	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatccttcctttaggtaaGgagtgccaatggaccgatgc	11	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145281373	T	T	145281373	1	4	9	1	0	0	0	0	0	0	0	0	10287	991	35	2		2	NBPF10	1	145281373	Translation_Start_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	7967	145281373	103969248	1277	9428											
NBPF10	100132406	broad.mit.edu	37	chr1	145281726	145281726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggagctccctagtgtccCaggattaggggacaaacccc	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145281726	A	A	145281726	1	1	9	0	1	0	0	0	0	0	0	0	10287	609	21	2		2	NBPF10	1	145281726	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	353	145281726	103968895	1278	9429											
NBPF10	100132406	broad.mit.edu	37	chr1	145293354	145293354	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaacccatcatatgtttGggtttcttctccccagtccc	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145293354	T	T	145293354	1	4	9	0	1	0	0	0	0	0	0	0	10287	1363	47	2		2	NBPF10	1	145293354	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	11628	145293354	103957267	1279	9430											
NBPF10	100132406	broad.mit.edu	37	chr1	145293368	145293368	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttgggtttcttctcccCagtccctgactccacctctt	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145293368	A	A	145293368	1	1	9	0	1	0	0	0	0	0	0	0	10287	609	21	2		2	NBPF10	1	145293368	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	145293368	103957253	1280	9431											
NBPF10	100132406	broad.mit.edu	37	chr1	145297585	145297585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttgcagaatgtgaagtGggaaatatctgaacgaacat	12	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145297585	T	T	145297585	1	4	9	0	1	0	0	0	0	0	0	0	10287	1363	47	2		2	NBPF10	1	145297585	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4217	145297585	103953036	1281	9432											
NBPF10	100132406	broad.mit.edu	37	chr1	145301728	145301728	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcttttctcagaatatgaaGagtgcaaagacctcataaaa	7	7	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145301728	T	T	145301728	4	4	9	1	0	0	0	0	0	1	0	0	10287	943	33	3	1023	3	NBPF10	1	145301728	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4143	145301728	103948893	1282	9433											
NBPF10	100132406	broad.mit.edu	37	chr1	145301759	145301759	+	Missense_Mutation	SNP	G	T	T													cctcataaaatttatgctgaGgaatgagcgacagttcaagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145301759	T	T	145301759	3	4	9	1	0	0	0	0	1	0	0	0	10287	1000	35	2	1054	2	NBPF10	1	145301759	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	145301759	103948862	1283	9434	47	2									
NBPF10	100132406	broad.mit.edu	37	chr1	145301764	145301764	+	Nonsense_Mutation	SNP	G	T	T													taaaatttatgctgaggaatGagcgacagttcaaggaggag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145301764	T	T	145301764	4	4	9	1	0	0	0	0	0	1	0	0	10287	1291	45	3	1059	3	NBPF10	1	145301764	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5	145301764	103948857	1284	9435	47	2									
NBPF10	100132406	broad.mit.edu	37	chr1	145304626	145304626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcctctcatgttgaatGggaggatgctgtacacatta	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145304626	T	T	145304626	3	4	9	1	0	0	0	0	1	0	0	0	10287	1357	47	2	1597	2	NBPF10	1	145304626	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2862	145304626	103945995	1285	9436											
NBPF10	100132406	broad.mit.edu	37	chr1	145323617	145323617	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatgggtgtaggtgaattGgcttattttgtctgtccctg	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145323617	T	T	145323617	1	4	9	0	1	0	0	0	0	0	0	0	10287	1363	47	2		2	NBPF10	1	145323617	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18991	145323617	103927004	1286	9437											
NBPF10	100132406	broad.mit.edu	37	chr1	145328323	145328323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagacagtggactgttatGggtgtaggtgaattggctta	14	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145328323	T	T	145328323	1	4	9	0	1	0	0	0	0	0	0	0	10287	1363	47	2		2	NBPF10	1	145328323	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4706	145328323	103922298	1287	9438											
NBPF10	100132406	broad.mit.edu	37	chr1	145368663	145368663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacctggtgttccagatGggagtcatattcccacaata	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145368663	T	T	145368663	3	4	9	1	0	0	0	0	1	0	0	0	10287	1348	47	2	10975	2	NBPF10	1	145368663	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40340	145368663	103881958	1288	9439											
NBPF10	100132406	broad.mit.edu	37	chr1	145368691	145368691	+	Intron	SNP	C	A	A													tattcccacaataagcagccCttagtaatccgagagatgtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145368691	A	A	145368691	1	1	9	0	1	0	0	0	0	0	0	0	10287	696	24	2		2	NBPF10	1	145368691	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	145368691	103881930	1289	9440	48	2									
NBPF10	100132406	broad.mit.edu	37	chr1	145368701	145368701	+	Intron	SNP	C	A	A													ataagcagcccttagtaatcCgagagatgtcattcctgcag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145368701	A	A	145368701	1	1	9	0	1	0	0	0	0	0	0	0	10287	667	23	1		1	NBPF10	1	145368701	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	145368701	103881920	1290	9441	48	2									
TXNIP	10628	broad.mit.edu	37	chr1	145438920	145438920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggaggtgtgtgaagttactCgtgtcaaagccgttaggatc	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145438920	A	A	145438920	3	1	9	1	0	0	0	0	1	0	0	0	16929	884	31	3	120	3	TXNIP	1	145438920	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70219	145438920	103811701	1291	9442											
TXNIP	10628	broad.mit.edu	37	chr1	145440096	145440096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgttcattcctgatgggcGggtgtctgtctctgctcgaa	12	10	3	1	rs6674773	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145440096	T	T	145440096	3	4	9	1	0	0	0	0	1	0	0	0	16929	1116	39	1	544	1	TXNIP	1	145440096	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1176	145440096	103810525	1292	9443											
LIX1L	128077	broad.mit.edu	37	chr1	145492260	145492260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacaaaagctgaggcccGgaggagtgctgcaaagattg	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145492260	T	T	145492260	3	4	9	1	0	0	0	0	1	0	0	0	8906	1116	39	1	492	1	LIX1L	1	145492260	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52164	145492260	103758361	1293	9444											
PEX11B	8799	broad.mit.edu	37	chr1	145518176	145518176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cactgttagtcacctcaatcGagccttgtacttcgcctgtg	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145518176	T	T	145518176	3	4	9	1	0	0	0	0	1	0	0	0	11833	1058	37	3	306	3	PEX11B	1	145518176	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25916	145518176	103732445	1294	9445											
ITGA10	8515	broad.mit.edu	37	chr1	145527555	145527555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcctcacagcttctctcGggctgtgcctctagccattc	8	16	3	0	rs34996146		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145527555	T	T	145527555	1	4	9	0	1	0	0	0	0	0	0	0	7943	1131	39	1		1	ITGA10	1	145527555	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9379	145527555	103723066	1295	9446											
ITGA10	8515	broad.mit.edu	37	chr1	145528543	145528543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtgccctcccaagcctGggagtaactatttcccccat	10	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145528543	T	T	145528543	1	4	9	0	1	0	0	0	0	0	0	0	7943	1363	47	2		2	ITGA10	1	145528543	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	988	145528543	103722078	1296	9447											
ITGA10	8515	broad.mit.edu	37	chr1	145530283	145530283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggctgcccaacatacatGgatgttgtcattgtcttgga	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145530283	T	T	145530283	3	4	9	1	0	0	0	0	1	0	0	0	7943	1348	47	2	520	2	ITGA10	1	145530283	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1740	145530283	103720338	1297	9448											
ITGA10	8515	broad.mit.edu	37	chr1	145532151	145532151	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcccatgggggccgaccCgaggctgccaggctactggt	15	14	0	0	rs145526374	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145532151	A	A	145532151	2	1	9	1	0	0	0	0	0	0	0	1	7943	639	23	1		1	ITGA10	1	145532151	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1868	145532151	103718470	1298	9449											
ITGA10	8515	broad.mit.edu	37	chr1	145542170	145542170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctactggcaaggttccCagtctaggcatttggcagtg	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145542170	A	A	145542170	1	1	9	0	1	0	0	0	0	0	0	0	7943	609	21	2		2	ITGA10	1	145542170	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10019	145542170	103708451	1299	9450											
ANKRD35	148741	broad.mit.edu	37	chr1	145561840	145561840	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagaaaaggatgctgccCggggggctttgtcaagaccg	17	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145561840	A	A	145561840	2	1	9	1	0	0	0	0	0	0	0	1	664	643	23	1		1	ANKRD35	1	145561840	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19670	145561840	103688781	1300	9451											
PIAS3	10401	broad.mit.edu	37	chr1	145578221	145578221	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagatcaaagagctttacCgacgacgctttccccggaag	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145578221	A	A	145578221	2	1	9	1	0	0	0	0	0	0	0	1	11972	644	23	1		1	PIAS3	1	145578221	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16381	145578221	103672400	1301	9452											
PIAS3	10401	broad.mit.edu	37	chr1	145581407	145581407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttgcttctcctcagctaGggaagatgcgcctgactgtc	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145581407	T	T	145581407	3	4	9	1	0	0	0	0	1	0	0	0	11972	1000	35	2	1022	2	PIAS3	1	145581407	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3186	145581407	103669214	1302	9453											
PIAS3	10401	broad.mit.edu	37	chr1	145585655	145585655	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaacttcgctgtccccCaacactgagcaagtatgctg	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145585655	A	A	145585655	1	1	9	0	1	0	0	0	0	0	0	0	11972	609	21	2		2	PIAS3	1	145585655	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	4248	145585655	103664966	1303	9454											
POLR3C	10623	broad.mit.edu	37	chr1	145592705	145592705	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatcactgtctcttcatGgtgcactcaatgtaagactc	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145592705	T	T	145592705	2	4	9	1	0	0	0	0	0	0	0	1	12325	1335	47	2		2	POLR3C	1	145592705	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7050	145592705	103657916	1304	9455											
POLR3C	10623	broad.mit.edu	37	chr1	145594058	145594058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttgacattacgtttcaGggtctctagctgctgacgtt	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145594058	T	T	145594058	3	4	9	1	0	0	0	0	1	0	0	0	12325	991	35	2	108	2	POLR3C	1	145594058	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1353	145594058	103656563	1305	9456											
POLR3C	10623	broad.mit.edu	37	chr1	145595145	145595145	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctgtgcaacaacattcGggcagctgacaggatgttca	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145595145	T	T	145595145	2	4	9	1	0	0	0	0	0	0	0	1	12325	1124	39	1		1	POLR3C	1	145595145	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1087	145595145	103655476	1306	9457											
POLR3C	10623	broad.mit.edu	37	chr1	145601837	145601837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggcctgccaataaatccCatcatctggaatgggctgag	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145601837	A	A	145601837	3	1	9	1	0	0	0	0	1	0	0	0	12325	594	21	2	950	2	POLR3C	1	145601837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6692	145601837	103648784	1307	9458											
NBPF10	100132406	broad.mit.edu	37	chr1	145608090	145608090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggcaagtcacagttccaGgggttaaaattccttaccta	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145608090	T	T	145608090	1	4	9	0	1	0	0	0	0	0	0	0	10287	1015	35	2		2	NBPF10	1	145608090	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6253	145608090	103642531	1308	9459											
POLR3C	10623	broad.mit.edu	37	chr1	145608142	145608142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaaccaggtacatgtcCttttcattaatgacaagtgt	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145608142	A	A	145608142	3	1	9	1	0	0	0	0	1	0	0	0	12325	680	24	2	1097	2	POLR3C	1	145608142	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	145608142	103642479	1309	9460											
RNF115	27246	broad.mit.edu	37	chr1	145687078	145687078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagcagttgtattgtgcCgtggctagaactggtgagta	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145687078	A	A	145687078	3	1	9	1	0	0	0	0	1	0	0	0	13541	652	23	1	800	1	RNF115	1	145687078	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78936	145687078	103563543	1310	9461											
PDZK1	5174	broad.mit.edu	37	chr1	145747066	145747066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacctccaccttcaacccccGagaatgtaaactgtccaagc	6	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145747066	T	T	145747066	3	4	9	1	0	0	0	0	1	0	0	0	11801	1058	37	3	25	3	PDZK1	1	145747066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59988	145747066	103503555	1311	9462											
NBPF10	100132406	broad.mit.edu	37	chr1	145769568	145769568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagggctaagctatatccCgatcatttacatgactgtga	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145769568	A	A	145769568	1	1	9	0	1	0	0	0	0	0	0	0	10287	667	23	1		1	NBPF10	1	145769568	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22502	145769568	103481053	1312	9463											
GPR89A	653519	broad.mit.edu	37	chr1	145811902	145811902	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaaatacttacgtagtcGgatattgctcacaataaaat	7	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145811902	T	T	145811902	2	4	9	1	0	0	0	0	0	0	0	1	6783	1124	39	1		1	GPR89A	1	145811902	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	42334	145811902	103438719	1313	9464											
NBPF10	100132406	broad.mit.edu	37	chr1	146398375	146398375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagggagagatgcctccCgctcattgaatgagcatctc	13	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146398375	A	A	146398375	3	1	9	1	0	0	0	0	1	0	0	0	10287	667	23	1		1	NBPF10	1	146398375	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	586473	146398375	102852246	1314	9465											
FMO5	2330	broad.mit.edu	37	chr1	146661741	146661741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaaccatatatcttcctGggagagtttcttaccttttg	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146661741	T	T	146661741	1	4	9	0	1	0	0	0	0	0	0	0	6016	1363	47	2		2	FMO5	1	146661741	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	263366	146661741	102588880	1315	9466											
FMO5	2330	broad.mit.edu	37	chr1	146684985	146684985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattcagtgaccacttccCattggcctgaagtggcaaaa	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146684985	A	A	146684985	3	1	9	1	0	0	0	0	1	0	0	0	6016	595	21	2	1391	2	FMO5	1	146684985	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23244	146684985	102565636	1316	9467											
FMO5	2330	broad.mit.edu	37	chr1	146696507	146696507	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaacctccagagccctcCgatgtcatcagtcctttcaa	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146696507	A	A	146696507	4	1	9	1	0	0	0	0	0	1	0	0	6016	661	23	1	1661	1	FMO5	1	146696507	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11522	146696507	102554114	1317	9468											
CHD1L	9557	broad.mit.edu	37	chr1	146747900	146747900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgggagcccagaaaccCgctgccgatgctgacctcca	10	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146747900	A	A	146747900	2	1	9	1	0	0	0	0	0	0	0	1	3355	639	23	1		1	CHD1L	1	146747900	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51393	146747900	102502721	1318	9469											
CHD1L	9557	broad.mit.edu	37	chr1	146756158	146756158	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagagggccgatcactcCgaaataaaggcagtgtaaga	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146756158	A	A	146756158	2	1	9	1	0	0	0	0	0	0	0	1	3355	644	23	1		1	CHD1L	1	146756158	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8258	146756158	102494463	1319	9470											
BCL9	607	broad.mit.edu	37	chr1	147090644	147090644	+	Missense_Mutation	SNP	G	T	T													cacacagatatctgcccttcGgaatgatccgaaacctctcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147090644	T	T	147090644	3	4	9	1	0	0	0	0	1	0	0	0	1386	1116	39	1	701	1	BCL9	1	147090644	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	334486	147090644	102159977	1320	9471	49	2									
BCL9	607	broad.mit.edu	37	chr1	147090653	147090653	+	Missense_Mutation	SNP	C	A	A													atctgcccttcggaatgatcCgaaacctctcccacaacagc					rs151130866		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147090653	A	A	147090653	3	1	9	1	0	0	0	0	1	0	0	0	1386	652	23	1	710	1	BCL9	1	147090653	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	147090653	102159968	1321	9472	49	2									
BCL9	607	broad.mit.edu	37	chr1	147091362	147091362	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttgaccatatgactccCgagcagatagcgtggctgaa	10	12	0	4	rs141096605	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147091362	A	A	147091362	2	1	9	1	0	0	0	0	0	0	0	1	1386	639	23	1		1	BCL9	1	147091362	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	709	147091362	102159259	1322	9473											
BCL9	607	broad.mit.edu	37	chr1	147092747	147092747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccatcacttcctgcccCgtcacctggatggacctctt	7	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147092747	A	A	147092747	3	1	9	1	0	0	0	0	1	0	0	0	1386	652	23	1	2804	1	BCL9	1	147092747	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1385	147092747	102157874	1323	9474											
BCL9	607	broad.mit.edu	37	chr1	147096118	147096118	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggaacagcatgccttcGgtgtttacagacccagatct	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147096118	T	T	147096118	2	4	9	1	0	0	0	0	0	0	0	1	1386	1103	39	1		1	BCL9	1	147096118	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3371	147096118	102154503	1324	9475											
NBPF14	25832	broad.mit.edu	37	chr1	148004531	148004531	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggaatgacacctctcGgcttagtaagggctgcttat	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148004531	T	T	148004531	1	4	9	0	1	0	0	0	0	0	0	0	10289	1131	39	1		1	NBPF14	1	148004531	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	908413	148004531	101246090	1325	9476											
NBPF14	25832	broad.mit.edu	37	chr1	148004555	148004555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaagggctgcttattgtGggaatatgactcccatctgg	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148004555	T	T	148004555	3	4	9	1	0	0	0	0	1	0	0	0	10289	1348	47	2	10	2	NBPF14	1	148004555	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	148004555	101246066	1326	9477											
LOC200030	200030	broad.mit.edu	37	chr1	148008554	148008554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacacagaattcagcatcCataattgctcaaagttacct	4	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148008554	A	A	148008554	1	1	9	0	1	0	0	0	0	0	0	0	8950	609	21	2		2	LOC200030	1	148008554	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3999	148008554	101242067	1327	9478											
LOC200030	200030	broad.mit.edu	37	chr1	148008669	148008669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatattaagctggttctcCtacacacataacaatccact	4	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148008669	A	A	148008669	1	1	9	0	1	0	0	0	0	0	0	0	8950	696	24	2		2	LOC200030	1	148008669	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	115	148008669	101241952	1328	9479											
LOC200030	200030	broad.mit.edu	37	chr1	148009267	148009267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatccctcagctcagtaaGggccacttgcagtaggaata	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148009267	T	T	148009267	1	4	9	0	1	0	0	0	0	0	0	0	8950	1015	35	2		2	LOC200030	1	148009267	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	598	148009267	101241354	1329	9480											
NBPF14	25832	broad.mit.edu	37	chr1	148009442	148009442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttcaagacaacctgaaGgagttgaatagcatctatcc	8	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148009442	T	T	148009442	3	4	9	1	0	0	0	0	1	0	0	0	10289	1000	35	2	928	2	NBPF14	1	148009442	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	175	148009442	101241179	1330	9481											
LOC200030	200030	broad.mit.edu	37	chr1	148009527	148009527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctgagcctggaaaagtGggaaaaagtaaagaataagc	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148009527	T	T	148009527	1	4	9	0	1	0	0	0	0	0	0	0	8950	1363	47	2		2	LOC200030	1	148009527	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	85	148009527	101241094	1331	9482											
LOC200030	200030	broad.mit.edu	37	chr1	148009575	148009575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagaaaccacacagctcCagctagatttcatggctaag	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148009575	A	A	148009575	1	1	9	0	1	0	0	0	0	0	0	0	8950	609	21	2		2	LOC200030	1	148009575	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	148009575	101241046	1332	9483											
LOC200030	200030	broad.mit.edu	37	chr1	148011662	148011662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacacagaattaagcatcCacaattgcgaaagtcacctg	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148011662	A	A	148011662	1	1	9	0	1	0	0	0	0	0	0	0	8950	609	21	2		2	LOC200030	1	148011662	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2087	148011662	101238959	1333	9484											
NBPF14	25832	broad.mit.edu	37	chr1	148011692	148011692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcacctggggcatggtGggttttgatcttcttcccct	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148011692	T	T	148011692	3	4	9	1	0	0	0	0	1	0	0	0	10289	1348	47	2	1252	2	NBPF14	1	148011692	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	148011692	101238929	1334	9485											
NBPF14	25832	broad.mit.edu	37	chr1	148011711	148011711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttttgatcttcttcccCttcttttcttccccttcttc	4	14	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148011711	A	A	148011711	3	1	9	1	0	0	0	0	1	0	0	0	10289	681	24	2	1271	2	NBPF14	1	148011711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	148011711	101238910	1335	9486											
NBPF14	25832	broad.mit.edu	37	chr1	148012540	148012540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccaacatgcttttcctcCaatgcataaaaggaacttcc	5	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148012540	A	A	148012540	3	1	9	1	0	0	0	0	1	0	0	0	10289	593	21	2	1390	2	NBPF14	1	148012540	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	829	148012540	101238081	1336	9487											
LOC200030	200030	broad.mit.edu	37	chr1	148016432	148016432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacctgttgcctcgtggtcCtcctttttcacttgatccca	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148016432	A	A	148016432	3	1	9	1	0	0	0	0	1	0	0	0	8950	680	24	2		2	LOC200030	1	148016432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3892	148016432	101234189	1337	9488											
LOC200030	200030	broad.mit.edu	37	chr1	148016451	148016451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctttttcacttgatccCaccgatgtcctgcaaataaa	4	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148016451	A	A	148016451	3	1	9	1	0	0	0	0	1	0	0	0	8950	595	21	2		2	LOC200030	1	148016451	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	148016451	101234170	1338	9489											
LOC200030	200030	broad.mit.edu	37	chr1	148016484	148016484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaataaattcagatgggccCtcttacattaagcagttctt	6	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148016484	A	A	148016484	1	1	9	0	1	0	0	0	0	0	0	0	8950	696	24	2		2	LOC200030	1	148016484	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	148016484	101234137	1339	9490											
LOC200030	200030	broad.mit.edu	37	chr1	148021579	148021579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaattccacaacattacctGggagacactggtcctttttc	6	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148021579	T	T	148021579	3	4	9	1	0	0	0	0	1	0	0	0	8950	1335	47	2		2	LOC200030	1	148021579	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5095	148021579	101229042	1340	9491											
LOC200030	200030	broad.mit.edu	37	chr1	148024938	148024938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattgcctaaggtgagacGgtagagaaaatttaagagta	11	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148024938	T	T	148024938	1	4	9	0	1	0	0	0	0	0	0	0	8950	1131	39	1		1	LOC200030	1	148024938	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3359	148024938	101225683	1341	9492											
LOC200030	200030	broad.mit.edu	37	chr1	148024976	148024976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaagagttgagtgatcCgctcaaatattgcaacagag	11	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148024976	A	A	148024976	1	1	9	0	1	0	0	0	0	0	0	0	8950	667	23	1		1	LOC200030	1	148024976	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	148024976	101225645	1342	9493											
LOC200030	200030	broad.mit.edu	37	chr1	148251781	148251781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgacccatcctatgtctGggcttccaaatggaactgta	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148251781	T	T	148251781	1	4	9	0	1	0	0	0	0	0	0	0	8950	1363	47	2		2	LOC200030	1	148251781	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	226805	148251781	100998840	1343	9494											
LOC200030	200030	broad.mit.edu	37	chr1	148251868	148251868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatctctcggcttagtaaGggctgtttattgtgggaata	12	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148251868	T	T	148251868	1	4	9	0	1	0	0	0	0	0	0	0	8950	1015	35	2		2	LOC200030	1	148251868	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	87	148251868	100998753	1344	9495											
LOC200030	200030	broad.mit.edu	37	chr1	148252064	148252064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtagaataacatccatcCagtgagtcctgtaagacttc	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148252064	A	A	148252064	1	1	9	0	1	0	0	0	0	0	0	0	8950	609	21	2		2	LOC200030	1	148252064	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	196	148252064	100998557	1345	9496											
LOC200030	200030	broad.mit.edu	37	chr1	148342472	148342472	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtattcagtgttacctGggggcagatgatttctgcac	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148342472	T	T	148342472	2	4	9	1	0	0	0	0	0	0	0	1	8950	1363	47	2		2	LOC200030	1	148342472	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	90408	148342472	100908149	1346	9497											
LOC200030	200030	broad.mit.edu	37	chr1	148344628	148344628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcctgcctccccctacgGggtcccctcacctgagctcc	8	23	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148344628	T	T	148344628	1	4	9	0	1	0	0	0	0	0	0	0	8950	1247	43	2		2	LOC200030	1	148344628	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2156	148344628	100905993	1347	9498											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149399063	149399063	+	RNA	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacctcctacacgtaaacGgagtagctctccttgcggct	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149399063	T	T	149399063	1	4	9	0	1	0	0	0	0	0	0	0	7247	1103	39	1		1	HIST2H2BF	1	149399063	RNA	SNP	G	TCGA-05-4396-01A-21D-1855-08	1054435	149399063	99851558	1348	9499											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149783726	149783726	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggacgagatgccggtgtcGgggtggacctgcttcagcac	16	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149783726	T	T	149783726	2	4	9	1	0	0	0	0	0	0	0	1	7247	1103	39	1		1	HIST2H2BF	1	149783726	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	384663	149783726	99466895	1349	9500											
HIST2H2BE	8349	broad.mit.edu	37	chr1	149858024	149858024	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatgcccatggccttggacGagatgccggtgtcggggtgg	18	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149858024	T	T	149858024	4	4	9	1	0	0	0	0	0	1	0	0	7246	1059	37	3	217	3	HIST2H2BE	1	149858024	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74298	149858024	99392597	1350	9501											
BOLA1	51027	broad.mit.edu	37	chr1	149871704	149871704	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggatccggggccatcggtcCggtggaggccgccattcgca	17	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149871704	G	G	149871704	3	3	9	1	0	0	0	0	1	0	0	0	1491	652	23	4	94	4	BOLA1	1	149871704	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13680	149871704	99378917	1351	9502											
SV2A	9900	broad.mit.edu	37	chr1	149877449	149877449	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctcttgtctgaggggtaGagttcaacagtcaacacgtc	10	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149877449	T	T	149877449	2	4	9	1	0	0	0	0	0	0	0	1	15535	929	33	3		3	SV2A	1	149877449	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5745	149877449	99373172	1352	9503											
SV2A	9900	broad.mit.edu	37	chr1	149879244	149879244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacacccaccagccacccCgccttaccagtgttatagaa	6	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149879244	A	A	149879244	1	1	9	0	1	0	0	0	0	0	0	0	15535	667	23	1		1	SV2A	1	149879244	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1795	149879244	99371377	1353	9504											
MTMR11	10903	broad.mit.edu	37	chr1	149902351	149902351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgctataacgtaaatccCagtcccagacagacagctgc	7	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149902351	A	A	149902351	3	1	9	1	0	0	0	0	1	0	0	0	10034	595	21	2	627	2	MTMR11	1	149902351	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23107	149902351	99348270	1354	9505											
MTMR11	10903	broad.mit.edu	37	chr1	149902734	149902734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatttctcaggaaggtaaGggtgtcaggaaccctgacac	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149902734	T	T	149902734	3	4	9	1	0	0	0	0	1	0	0	0	10034	1000	35	2	770	2	MTMR11	1	149902734	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	383	149902734	99347887	1355	9506											
OTUD7B	56957	broad.mit.edu	37	chr1	149915753	149915753	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccttcagtgttccaccCgttcagaacctgtgcaccag	8	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149915753	A	A	149915753	1	1	9	0	1	0	0	0	0	0	0	0	11413	667	23	1		1	OTUD7B	1	149915753	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	13019	149915753	99334868	1356	9507											
OTUD7B	56957	broad.mit.edu	37	chr1	149916261	149916261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgctgggggaccggtcGgctgctcttccctagcatct	12	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149916261	T	T	149916261	3	4	9	1	0	0	0	0	1	0	0	0	11413	1116	39	1	508	1	OTUD7B	1	149916261	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	508	149916261	99334360	1357	9508											
OTUD7B	56957	broad.mit.edu	37	chr1	149936055	149936055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagtcacactgacctaaaCacttggaaatattttctact	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149936055	A	A	149936055	1	1	9	0	1	0	0	0	0	0	0	0	11413	493	17	3		3	OTUD7B	1	149936055	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19794	149936055	99314566	1358	9509											
OTUD7B	56957	broad.mit.edu	37	chr1	149937788	149937788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgggatccacactcaccCaccagttcaaacgccctgta	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149937788	A	A	149937788	3	1	9	1	0	0	0	0	1	0	0	0	11413	595	21	2	2045	2	OTUD7B	1	149937788	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1733	149937788	99312833	1359	9510											
OTUD7B	56957	broad.mit.edu	37	chr1	149949211	149949211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaatttctaattatgacGggttatacacaaagtatatc	5	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149949211	T	T	149949211	1	4	9	0	1	0	0	0	0	0	0	0	11413	1131	39	1		1	OTUD7B	1	149949211	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11423	149949211	99301410	1360	9511											
CA14	23632	broad.mit.edu	37	chr1	150234601	150234601	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatctgggtggacttcccCgaaaatatgtagctgcccag	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150234601	A	A	150234601	2	1	9	1	0	0	0	0	0	0	0	1	2541	644	23	1		1	CA14	1	150234601	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	285390	150234601	99016020	1361	9512											
CA14	23632	broad.mit.edu	37	chr1	150236104	150236104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccttataagataatgcGgggaggggaggtgtcctcac	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150236104	T	T	150236104	1	4	9	0	1	0	0	0	0	0	0	0	2541	1131	39	1		1	CA14	1	150236104	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1503	150236104	99014517	1362	9513											
CA14	23632	broad.mit.edu	37	chr1	150236224	150236224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctaggtgtaggaatcttGgttggctgtctctgccttct	12	8	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150236224	T	T	150236224	3	4	9	1	0	0	0	0	1	0	0	0	2541	1339	47	2	932	2	CA14	1	150236224	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	120	150236224	99014397	1363	9514											
C1orf54	79630	broad.mit.edu	37	chr1	150252032	150252032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacaccagcctactgtgtGgggatgtcggtattttagca	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150252032	T	T	150252032	1	4	9	0	1	0	0	0	0	0	0	0	2068	1363	47	2		2	C1orf54	1	150252032	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15808	150252032	98998589	1364	9515											
PRPF3	9129	broad.mit.edu	37	chr1	150298113	150298113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaatttgtttcactcctGggaataaaattccagtgttg	7	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150298113	T	T	150298113	1	4	9	0	1	0	0	0	0	0	0	0	12671	1363	47	2		2	PRPF3	1	150298113	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46081	150298113	98952508	1365	9516											
PRPF3	9129	broad.mit.edu	37	chr1	150318926	150318926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcgtcttatgctgcatcGgataaagtgggatgaacaga	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150318926	T	T	150318926	3	4	9	1	0	0	0	0	1	0	0	0	12671	1116	39	1	1852	1	PRPF3	1	150318926	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20813	150318926	98931695	1366	9517											
PRPF3	9129	broad.mit.edu	37	chr1	150319031	150319031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggatggtgcatctgtcCgttcatcttatttcctccct	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150319031	A	A	150319031	1	1	9	0	1	0	0	0	0	0	0	0	12671	667	23	1		1	PRPF3	1	150319031	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	150319031	98931590	1367	9518											
RPRD2	23248	broad.mit.edu	37	chr1	150390155	150390155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaatgcaatcatattcCgtgaatcatttgctgatgta	8	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150390155	A	A	150390155	3	1	9	1	0	0	0	0	1	0	0	0	13728	652	23	1	295	1	RPRD2	1	150390155	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71124	150390155	98860466	1368	9519											
RPRD2	23248	broad.mit.edu	37	chr1	150444026	150444026	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaagctgtctgataccaccGagtaccagccaattctgtcc	8	14	2	1	rs117341696	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150444026	T	T	150444026	4	4	9	1	0	0	0	0	0	1	0	0	13728	1059	37	3	2644	3	RPRD2	1	150444026	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53871	150444026	98806595	1369	9520											
RPRD2	23248	broad.mit.edu	37	chr1	150444194	150444194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaagagggaatgaacctGggtctgaccggtcaccatca	13	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150444194	T	T	150444194	3	4	9	1	0	0	0	0	1	0	0	0	13728	1348	47	2	2812	2	RPRD2	1	150444194	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	168	150444194	98806427	1370	9521											
RPRD2	23248	broad.mit.edu	37	chr1	150444217	150444217	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgaccggtcaccatcaccGagtaagaatgattcattttt	7	10	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150444217	T	T	150444217	2	4	9	1	0	0	0	0	0	0	0	1	13728	1045	37	3		3	RPRD2	1	150444217	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	150444217	98806404	1371	9522											
RPRD2	23248	broad.mit.edu	37	chr1	150444379	150444379	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacccttgccgctcccacGggtcacccacccacgtcagg	8	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150444379	T	T	150444379	2	4	9	1	0	0	0	0	0	0	0	1	13728	1103	39	1		1	RPRD2	1	150444379	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	162	150444379	98806242	1372	9523											
TARS2	80222	broad.mit.edu	37	chr1	150460296	150460296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattctaagaaagaatgatGggacgtgtgttacctgctaa	10	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150460296	T	T	150460296	1	4	9	0	1	0	0	0	0	0	0	0	15679	1363	47	2		2	TARS2	1	150460296	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15917	150460296	98790325	1373	9524											
TARS2	80222	broad.mit.edu	37	chr1	150464868	150464868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctgaaaatcactaactGgcctcttctttctcctaggt	6	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150464868	T	T	150464868	1	4	9	0	1	0	0	0	0	0	0	0	15679	1363	47	2		2	TARS2	1	150464868	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4572	150464868	98785753	1374	9525											
TARS2	80222	broad.mit.edu	37	chr1	150471414	150471414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgatttcctccgttcCgtctatgccgttcttggctt	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150471414	A	A	150471414	2	1	9	1	0	0	0	0	0	0	0	1	15679	639	23	1		1	TARS2	1	150471414	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6546	150471414	98779207	1375	9526											
ECM1	1893	broad.mit.edu	37	chr1	150483621	150483621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggagattggatattccCgctgctgccactgccgcagc	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150483621	A	A	150483621	3	1	9	1	0	0	0	0	1	0	0	0	4937	652	23	1	677	1	ECM1	1	150483621	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12207	150483621	98767000	1376	9527											
ECM1	1893	broad.mit.edu	37	chr1	150483716	150483716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggggtgtcctttaacccCagacagtatgtgtgttttaa	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150483716	A	A	150483716	1	1	9	0	1	0	0	0	0	0	0	0	4937	609	21	2		2	ECM1	1	150483716	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	150483716	98766905	1377	9528											
MCL1	4170	broad.mit.edu	37	chr1	150550650	150550650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaacctttagatatcccCacctctctaaaaaaaatcct	1	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150550650	A	A	150550650	1	1	9	0	1	0	0	0	0	0	0	0	9477	609	21	2		2	MCL1	1	150550650	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66934	150550650	98699971	1378	9529											
MCL1	4170	broad.mit.edu	37	chr1	150550748	150550748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtttaactagccagtccCgttttgtccttacgagaacg	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150550748	A	A	150550748	3	1	9	1	0	0	0	0	1	0	0	0	9477	652	23	1	163	1	MCL1	1	150550748	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	150550748	98699873	1379	9530											
ENSA	2029	broad.mit.edu	37	chr1	150599748	150599748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggccttaatttcctacatGggaaatcaggagggaattga	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150599748	T	T	150599748	1	4	9	0	1	0	0	0	0	0	0	0	5178	1363	47	2		2	ENSA	1	150599748	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49000	150599748	98650873	1380	9531											
ENSA	2029	broad.mit.edu	37	chr1	150599780	150599780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaattgataccacatcagGgatttacattaatttgactt	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150599780	T	T	150599780	1	4	9	0	1	0	0	0	0	0	0	0	5178	1247	43	2		2	ENSA	1	150599780	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	150599780	98650841	1381	9532											
GOLPH3L	55204	broad.mit.edu	37	chr1	150667295	150667295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttcagtgcgacgggccCggtgagttaaagtggtcatt	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150667295	A	A	150667295	3	1	9	1	0	0	0	0	1	0	0	0	6633	652	23	1	853	1	GOLPH3L	1	150667295	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67515	150667295	98583326	1382	9533											
CTSS	1520	broad.mit.edu	37	chr1	150727538	150727538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaatcaggcaatatcCgattagggtttgacttatat	8	8	1	2	rs140031053	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150727538	A	A	150727538	3	1	9	1	0	0	0	0	1	0	0	0	4075	652	23	1	677	1	CTSS	1	150727538	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60243	150727538	98523083	1383	9534											
ARNT	405	broad.mit.edu	37	chr1	150799035	150799035	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacctgttggaagctgtctCttagaagctgctggtcttca	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150799035	A	A	150799035	3	1	9	1	0	0	0	0	1	0	0	0	969	913	32	3	1183	3	ARNT	1	150799035	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71497	150799035	98451586	1384	9535											
ARNT	405	broad.mit.edu	37	chr1	150814941	150814941	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagctctgctcatcatcCgacctaaaaatagaattaat	6	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150814941	A	A	150814941	2	1	9	1	0	0	0	0	0	0	0	1	969	639	23	1		1	ARNT	1	150814941	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15906	150814941	98435680	1385	9536											
SETDB1	9869	broad.mit.edu	37	chr1	150916444	150916444	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcctatgtcacacagtcGgaactgtatcccatttgccg	8	13	1	0	rs138641374		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150916444	T	T	150916444	2	4	9	1	0	0	0	0	0	0	0	1	14251	1103	39	1		1	SETDB1	1	150916444	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101503	150916444	98334177	1386	9537											
SETDB1	9869	broad.mit.edu	37	chr1	150936041	150936041	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggcagtaaaatcaaccCgaggctttgctcttaaatca	8	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150936041	A	A	150936041	2	1	9	1	0	0	0	0	0	0	0	1	14251	644	23	1		1	SETDB1	1	150936041	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19597	150936041	98314580	1387	9538											
LASS2	29956	broad.mit.edu	37	chr1	150939315	150939315	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaggtgttcttccatccCgcgtagttaaacatcttggc	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150939315	A	A	150939315	2	1	9	1	0	0	0	0	0	0	0	1	8711	639	23	1		1	LASS2	1	150939315	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3274	150939315	98311306	1388	9539											
ANXA9	8416	broad.mit.edu	37	chr1	150955597	150955597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccatgtctgtgactggcGggaagatggcaccgtccctc	13	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150955597	T	T	150955597	3	4	9	1	0	0	0	0	1	0	0	0	727	1116	39	1	18	1	ANXA9	1	150955597	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16282	150955597	98295024	1389	9540											
FAM63A	55793	broad.mit.edu	37	chr1	150970624	150970624	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccaggccccttgcccagGgaatgactcaggtgaaagtc	12	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150970624	T	T	150970624	2	4	9	1	0	0	0	0	0	0	0	1	5647	1219	43	2		2	FAM63A	1	150970624	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15027	150970624	98279997	1390	9541											
FAM63A	55793	broad.mit.edu	37	chr1	150971837	150971837	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcacgccacccccaaactCgcattaccttatgcttagtc	5	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150971837	A	A	150971837	1	1	9	0	1	0	0	0	0	0	0	0	5647	899	31	3		3	FAM63A	1	150971837	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1213	150971837	98278784	1391	9542											
FAM63A	55793	broad.mit.edu	37	chr1	150973086	150973086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgtcattgcatcatcCacattctgggggtagaaaaa	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150973086	A	A	150973086	2	1	9	1	0	0	0	0	0	0	0	1	5647	581	21	2		2	FAM63A	1	150973086	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1249	150973086	98277535	1392	9543											
PRUNE	58497	broad.mit.edu	37	chr1	150990294	150990294	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttctctccaggagtccCgacctctacatgttgtgctg	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150990294	A	A	150990294	2	1	9	1	0	0	0	0	0	0	0	1	12746	644	23	1		1	PRUNE	1	150990294	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17208	150990294	98260327	1393	9544											
PRUNE	58497	broad.mit.edu	37	chr1	150998032	150998032	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacatggaccttaaaattGgaaaggcaaccccaaaggac	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150998032	T	T	150998032	4	4	9	1	0	0	0	0	0	1	0	0	12746	1349	47	2	580	2	PRUNE	1	150998032	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7738	150998032	98252589	1394	9545											
BNIPL	149428	broad.mit.edu	37	chr1	151016187	151016187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggatacgtcagtgttacCgtaccctggatcggcggtga	14	10	1	1	rs150118714		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151016187	A	A	151016187	3	1	9	1	0	0	0	0	1	0	0	0	1486	652	23	1	861	1	BNIPL	1	151016187	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18155	151016187	98234434	1395	9546											
BNIPL	149428	broad.mit.edu	37	chr1	151018351	151018351	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctggcactgcttcggccCttcatcaggtactagttcta	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151018351	A	A	151018351	2	1	9	1	0	0	0	0	0	0	0	1	1486	668	24	2		2	BNIPL	1	151018351	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2164	151018351	98232270	1396	9547											
SEMA6C	10500	broad.mit.edu	37	chr1	151108119	151108119	+	Missense_Mutation	SNP	C	A	A													gaggatgggctcaggtccccCggatcgcccacctggggtca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151108119	A	A	151108119	3	1	9	1	0	0	0	0	1	0	0	0	14154	652	23	1	1535	1	SEMA6C	1	151108119	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89768	151108119	98142502	1397	9548	50	2									
SEMA6C	10500	broad.mit.edu	37	chr1	151108128	151108128	+	Missense_Mutation	SNP	C	A	A													ctcaggtcccccggatcgccCacctggggtcagcaccttca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151108128	A	A	151108128	3	1	9	1	0	0	0	0	1	0	0	0	14154	594	21	2	1544	2	SEMA6C	1	151108128	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	151108128	98142493	1398	9549	50	2									
SCNM1	79005	broad.mit.edu	37	chr1	151140558	151140558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactgttttaagaggttgGgagtcataggagagttggcc	15	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151140558	T	T	151140558	1	4	9	0	1	0	0	0	0	0	0	0	14039	1247	43	2		2	SCNM1	1	151140558	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32430	151140558	98110063	1399	9550											
TMOD4	29765	broad.mit.edu	37	chr1	151143010	151143010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacgtagttcattgtttcGggtcatggcctgggctgccc	12	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151143010	T	T	151143010	2	4	9	1	0	0	0	0	0	0	0	1	16359	1124	39	1		1	TMOD4	1	151143010	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2452	151143010	98107611	1400	9551											
VPS72	6944	broad.mit.edu	37	chr1	151149078	151149078	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacggaacagcaagagcccCaatcagggcaggaaagaagt	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151149078	A	A	151149078	1	1	9	0	1	0	0	0	0	0	0	0	17344	609	21	2		2	VPS72	1	151149078	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	6068	151149078	98101543	1401	9552											
VPS72	6944	broad.mit.edu	37	chr1	151156801	151156801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagacttacccagtgacCgtaaattaagctcttctgtg	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151156801	A	A	151156801	3	1	9	1	0	0	0	0	1	0	0	0	17344	652	23	1	552	1	VPS72	1	151156801	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7723	151156801	98093820	1402	9553											
VPS72	6944	broad.mit.edu	37	chr1	151157965	151157965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaattttgccaattgaccCtaacatccctactcactgtc	3	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151157965	A	A	151157965	1	1	9	0	1	0	0	0	0	0	0	0	17344	696	24	2		2	VPS72	1	151157965	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1164	151157965	98092656	1403	9554											
VPS72	6944	broad.mit.edu	37	chr1	151157991	151157991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctactcactgtcagagcCgtcatcttgtagttctaatg	7	12	5	1	rs148105499		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151157991	A	A	151157991	3	1	9	1	0	0	0	0	1	0	0	0	17344	652	23	1	734	1	VPS72	1	151157991	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	151157991	98092630	1404	9555											
PIP5K1A	8394	broad.mit.edu	37	chr1	151171529	151171529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttttcatcctttgatccCgcggtcccttcctgtacctt	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151171529	A	A	151171529	2	1	9	1	0	0	0	0	0	0	0	1	12034	639	23	1		1	PIP5K1A	1	151171529	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13538	151171529	98079092	1405	9556											
PIP5K1A	8394	broad.mit.edu	37	chr1	151196905	151196905	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggctagaaattatgcaactCatcttttattgtagtttatt	6	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151196905	A	A	151196905	1	1	9	0	1	0	0	0	0	0	0	0	12034	841	29	3		3	PIP5K1A	1	151196905	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25376	151196905	98053716	1406	9557											
PIP5K1A	8394	broad.mit.edu	37	chr1	151214502	151214502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttttcagaccaactttGggtgtgtgttggggatacta	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151214502	T	T	151214502	1	4	9	0	1	0	0	0	0	0	0	0	12034	1363	47	2		2	PIP5K1A	1	151214502	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17597	151214502	98036119	1407	9558											
PIP5K1A	8394	broad.mit.edu	37	chr1	151214513	151214513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaactttgggtgtgtgttGgggatactagcaattatttg	12	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151214513	T	T	151214513	1	4	9	0	1	0	0	0	0	0	0	0	12034	1363	47	2		2	PIP5K1A	1	151214513	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	151214513	98036108	1408	9559											
PSMD4	5710	broad.mit.edu	37	chr1	151239681	151239681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgacgtgatgcaggacccCgagttccttcagagtgtcct	11	12	1	2	rs1802788		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151239681	A	A	151239681	2	1	9	1	0	0	0	0	0	0	0	1	12806	639	23	1		1	PSMD4	1	151239681	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25168	151239681	98010940	1409	9560											
PI4KB	5298	broad.mit.edu	37	chr1	151282627	151282627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcagaagacctggggacGgagaggaaatgcggccactg	17	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151282627	T	T	151282627	1	4	9	0	1	0	0	0	0	0	0	0	11969	1131	39	1		1	PI4KB	1	151282627	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42946	151282627	97967994	1410	9561											
RFX5	5993	broad.mit.edu	37	chr1	151316261	151316261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacgatggaactgaaggacCgtttcaggatccgctctgcc	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151316261	A	A	151316261	3	1	9	1	0	0	0	0	1	0	0	0	13374	652	23	1	1209	1	RFX5	1	151316261	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33634	151316261	97934360	1411	9562											
RFX5	5993	broad.mit.edu	37	chr1	151318392	151318392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctcttgccctcttcccCaacacacttaccaggatccc	3	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151318392	A	A	151318392	1	1	9	0	1	0	0	0	0	0	0	0	13374	609	21	2		2	RFX5	1	151318392	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2131	151318392	97932229	1412	9563											
SELENBP1	8991	broad.mit.edu	37	chr1	151338176	151338176	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggcctgtgggcagggggcGagtagagcctttaaggactc	17	9	0	1	rs75460835	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151338176	T	T	151338176	1	4	9	0	1	0	0	0	0	0	0	0	14127	1073	37	3		3	SELENBP1	1	151338176	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19784	151338176	97912445	1413	9564											
SELENBP1	8991	broad.mit.edu	37	chr1	151338254	151338254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcactcacctggcatttcGggcagcagccagcccttcac	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151338254	T	T	151338254	2	4	9	1	0	0	0	0	0	0	0	1	14127	1103	39	1		1	SELENBP1	1	151338254	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	78	151338254	97912367	1414	9565											
SELENBP1	8991	broad.mit.edu	37	chr1	151338921	151338921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatacatataagtggctccCgtacagtcctggggtgggag	13	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151338921	A	A	151338921	3	1	9	1	0	0	0	0	1	0	0	0	14127	652	23	1	769	1	SELENBP1	1	151338921	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	667	151338921	97911700	1415	9566											
SELENBP1	8991	broad.mit.edu	37	chr1	151340567	151340567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctcactggttctccttGggaagtcattccaaccctcc	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151340567	T	T	151340567	1	4	9	0	1	0	0	0	0	0	0	0	14127	1363	47	2		2	SELENBP1	1	151340567	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1646	151340567	97910054	1416	9567											
PSMB4	5692	broad.mit.edu	37	chr1	151372054	151372054	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttcattttttctgctacCgtgactaagatggaagcgtt	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151372054	A	A	151372054	1	1	9	0	1	0	0	0	0	0	0	0	12785	667	23	1		1	PSMB4	1	151372054	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	31487	151372054	97878567	1417	9568											
PSMB4	5692	broad.mit.edu	37	chr1	151373007	151373007	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccatgtacagccggcgctCgaagatgaaccctttgtgga	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151373007	A	A	151373007	4	1	9	1	0	0	0	0	0	1	0	0	12785	893	31	3	447	3	PSMB4	1	151373007	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	953	151373007	97877614	1418	9569											
PSMB4	5692	broad.mit.edu	37	chr1	151373247	151373247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcctgttagcttcctcGgttatgtggacatgcttggt	12	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151373247	T	T	151373247	3	4	9	1	0	0	0	0	1	0	0	0	12785	1116	39	1	516	1	PSMB4	1	151373247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	240	151373247	97877374	1419	9570											
PSMB4	5692	broad.mit.edu	37	chr1	151374064	151374064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgttgaaatagagggacCattgtctacagagaccaact	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151374064	A	A	151374064	3	1	9	1	0	0	0	0	1	0	0	0	12785	594	21	2	762	2	PSMB4	1	151374064	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	817	151374064	97876557	1420	9571											
POGZ	23126	broad.mit.edu	37	chr1	151377880	151377880	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgtgcttctgccacactcGagttgaccacagctccatga	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151377880	T	T	151377880	2	4	9	1	0	0	0	0	0	0	0	1	12281	1066	37	3		3	POGZ	1	151377880	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3816	151377880	97872741	1421	9572											
POGZ	23126	broad.mit.edu	37	chr1	151378841	151378841	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagctggggtggccccCgcagatttcacagtggcagc	15	13	2	1	rs143626108		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151378841	A	A	151378841	2	1	9	1	0	0	0	0	0	0	0	1	12281	639	23	1		1	POGZ	1	151378841	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	961	151378841	97871780	1422	9573											
POGZ	23126	broad.mit.edu	37	chr1	151381203	151381203	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagccctccagctgcttGggtttacggaaggttttatg	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151381203	T	T	151381203	2	4	9	1	0	0	0	0	0	0	0	1	12281	1335	47	2		2	POGZ	1	151381203	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2362	151381203	97869418	1423	9574											
POGZ	23126	broad.mit.edu	37	chr1	151413464	151413464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcgctgttctgtgcccCgctgctactaacggtggtgg	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151413464	A	A	151413464	3	1	9	1	0	0	0	0	1	0	0	0	12281	652	23	1	4091	1	POGZ	1	151413464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32261	151413464	97837157	1424	9575											
CGN	57530	broad.mit.edu	37	chr1	151491657	151491657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggacagccgcctcccacGggacacctttgaggaacggg	13	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151491657	T	T	151491657	3	4	9	1	0	0	0	0	1	0	0	0	3333	1116	39	1	664	1	CGN	1	151491657	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78193	151491657	97758964	1425	9576											
CGN	57530	broad.mit.edu	37	chr1	151504890	151504890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcagttggagaagatcGgggaggactctaagcaagcc	14	7	2	2	rs142577828		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151504890	T	T	151504890	3	4	9	1	0	0	0	0	1	0	0	0	3333	1116	39	1	2634	1	CGN	1	151504890	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13233	151504890	97745731	1426	9577											
TUFT1	7286	broad.mit.edu	37	chr1	151530016	151530016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccacatgcctaagcaccGggagctggcagacaaggatg	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151530016	T	T	151530016	1	4	9	0	1	0	0	0	0	0	0	0	16898	1131	39	1		1	TUFT1	1	151530016	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25126	151530016	97720605	1427	9578											
TUFT1	7286	broad.mit.edu	37	chr1	151553371	151553371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagctgaacgtggcacccGggaagccagaaaaaggccaa	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151553371	T	T	151553371	1	4	9	0	1	0	0	0	0	0	0	0	16898	1131	39	1		1	TUFT1	1	151553371	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23355	151553371	97697250	1428	9579											
CELF3	11189	broad.mit.edu	37	chr1	151681451	151681451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgggaaggagaggcccGggggcaggggagtggggctc	25	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151681451	T	T	151681451	1	4	9	0	1	0	0	0	0	0	0	0	3247	1131	39	1		1	CELF3	1	151681451	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	128080	151681451	97569170	1429	9580											
MRPL9	65005	broad.mit.edu	37	chr1	151734909	151734909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcatatacagccagtccCtgaggaaggagtcgattccg	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151734909	A	A	151734909	3	1	9	1	0	0	0	0	1	0	0	0	9914	680	24	2	445	2	MRPL9	1	151734909	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53458	151734909	97515712	1430	9581											
MRPL9	65005	broad.mit.edu	37	chr1	151735506	151735506	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagctccaggttttctttGggccgatgcttcgtgtcctc	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151735506	T	T	151735506	2	4	9	1	0	0	0	0	0	0	0	1	9914	1335	47	2		2	MRPL9	1	151735506	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	597	151735506	97515115	1431	9582											
TDRKH	11022	broad.mit.edu	37	chr1	151751632	151751632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttttataagtcttgataGtagtaatgtcccttctgatt	7	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151751632	T	T	151751632	3	4	9	1	0	0	0	0	1	0	0	0	15859	1020	36	3	1213	3	TDRKH	1	151751632	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16126	151751632	97498989	1432	9583											
LINGO4	339398	broad.mit.edu	37	chr1	151774876	151774876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaggccatggaaggccCcaggctcaagggttgagagc	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151774876	A	A	151774876	3	1	9	1	0	0	0	0	1	0	0	0	8890	623	22	2	1480	2	LINGO4	1	151774876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23244	151774876	97475745	1433	9584											
RORC	6097	broad.mit.edu	37	chr1	151785724	151785724	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccctcacccaaggctcGgaacagctccatgccaccgt	8	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151785724	T	T	151785724	2	4	9	1	0	0	0	0	0	0	0	1	13641	1124	39	1		1	RORC	1	151785724	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10848	151785724	97464897	1434	9585											
RORC	6097	broad.mit.edu	37	chr1	151785742	151785742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggaacagctccatgccacCgtatttgccttcaaaaaaga	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151785742	A	A	151785742	3	1	9	1	0	0	0	0	1	0	0	0	13641	652	23	1	425	1	RORC	1	151785742	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	151785742	97464879	1435	9586											
THEM4	117145	broad.mit.edu	37	chr1	151847334	151847334	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgcttcttctggaggggcGagaatgagatggagttcacc	14	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151847334	T	T	151847334	1	4	9	0	1	0	0	0	0	0	0	0	15981	1073	37	3		3	THEM4	1	151847334	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	61592	151847334	97403287	1436	9587											
S100A10	6281	broad.mit.edu	37	chr1	151955571	151955571	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctatgggggaagctgtGgggcagattccttaagcgac	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151955571	T	T	151955571	1	4	9	0	1	0	0	0	0	0	0	0	13883	1363	47	2		2	S100A10	1	151955571	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	108237	151955571	97295050	1437	9588											
S100A10	6281	broad.mit.edu	37	chr1	151955702	151955702	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatgcaatggtgaggccCgcaattagggaaaagaagct	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151955702	G	G	151955702	2	3	9	1	0	0	0	0	0	0	0	1	13883	639	23	4		4	S100A10	1	151955702	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	131	151955702	97294919	1438	9589											
S100A10	6281	broad.mit.edu	37	chr1	151958751	151958751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaggatgtaaagtaacaGggtctacattaacttttttt	7	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151958751	T	T	151958751	1	4	9	0	1	0	0	0	0	0	0	0	13883	1015	35	2		2	S100A10	1	151958751	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3049	151958751	97291870	1439	9590											
TCHHL1	126637	broad.mit.edu	37	chr1	152058102	152058102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccagggagctgcattaGggaaagctggtcagtgaagt	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152058102	T	T	152058102	3	4	9	1	0	0	0	0	1	0	0	0	15823	991	35	2	662	2	TCHHL1	1	152058102	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99351	152058102	97192519	1440	9591											
TCHHL1	126637	broad.mit.edu	37	chr1	152058383	152058383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctgcctctgggtatctGggttattattgtgacctcct	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152058383	T	T	152058383	3	4	9	1	0	0	0	0	1	0	0	0	15823	1348	47	2	943	2	TCHHL1	1	152058383	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	281	152058383	97192238	1441	9592											
TCHHL1	126637	broad.mit.edu	37	chr1	152059108	152059108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataatcctcaggttcaccCaaattctttgttttagctgg	6	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152059108	A	A	152059108	3	1	9	1	0	0	0	0	1	0	0	0	15823	593	21	2	1668	2	TCHHL1	1	152059108	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	725	152059108	97191513	1442	9593											
TCHHL1	126637	broad.mit.edu	37	chr1	152060547	152060547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccagtcagtgttgcccCgttactgtcctcactggcat	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152060547	A	A	152060547	3	1	9	1	0	0	0	0	1	0	0	0	15823	652	23	1	2649	1	TCHHL1	1	152060547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1439	152060547	97190074	1443	9594											
TCHH	7062	broad.mit.edu	37	chr1	152080066	152080066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccgtaatttcctttccCgttcctggcgacgtttctgc	7	15	1	0	rs140720320	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152080066	A	A	152080066	3	1	9	1	0	0	0	0	1	0	0	0	15822	652	23	1	208	1	TCHH	1	152080066	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19519	152080066	97170555	1444	9595											
TCHH	7062	broad.mit.edu	37	chr1	152081255	152081255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgtcacgctcttggcGgtgcagctgctgttcttccc	10	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152081255	T	T	152081255	3	4	9	1	0	0	0	0	1	0	0	0	15822	1116	39	1	1397	1	TCHH	1	152081255	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1189	152081255	97169366	1445	9596											
TCHH	7062	broad.mit.edu	37	chr1	152081650	152081650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcagcggctgttcctccCtttcctggagcagctgttcc	12	15	0	0	rs112406611		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152081650	A	A	152081650	3	1	9	1	0	0	0	0	1	0	0	0	15822	681	24	2	1792	2	TCHH	1	152081650	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	395	152081650	97168971	1446	9597											
TCHH	7062	broad.mit.edu	37	chr1	152083165	152083165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgttgggcacgctccCgccgctggagctgctcctct	14	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152083165	A	A	152083165	3	1	9	1	0	0	0	0	1	0	0	0	15822	652	23	1	3307	1	TCHH	1	152083165	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1515	152083165	97167456	1447	9598											
TCHH	7062	broad.mit.edu	37	chr1	152084220	152084220	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgcgcctctcctcctcctcGagcttcagccaacgttcgcg	8	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152084220	T	T	152084220	2	4	9	1	0	0	0	0	0	0	0	1	15822	1045	37	3		3	TCHH	1	152084220	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1055	152084220	97166401	1448	9599											
TCHH	7062	broad.mit.edu	37	chr1	152086420	152086420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttgttagttcttaccCgaagcacagctccaaattcc	5	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152086420	A	A	152086420	3	1	9	1	0	0	0	0	1	0	0	0	15822	666	23	1	5702	1	TCHH	1	152086420	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2200	152086420	97164201	1449	9600											
RPTN	126638	broad.mit.edu	37	chr1	152127961	152127961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactctggccttgtctgtcCatctgactgtagtgggaact	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152127961	A	A	152127961	3	1	9	1	0	0	0	0	1	0	0	0	13775	594	21	2	744	2	RPTN	1	152127961	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41541	152127961	97122660	1450	9601			7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152128191	152128191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtctgtctgaccatagtGggaactctggccttgtctgt	11	10	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152128191	T	T	152128191	3	4	9	1	0	0	0	0	1	0	0	0	13775	1348	47	2	974	2	RPTN	1	152128191	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	230	152128191	97122430	1451	9602			7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152128272	152128272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccatagtgggaactctGgccttgtctgtctgtctgac	11	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152128272	T	T	152128272	3	4	9	1	0	0	0	0	1	0	0	0	13775	1357	47	2	1055	2	RPTN	1	152128272	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81	152128272	97122349	1452	9603			7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152128299	152128299	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtctgtctgaccgtagtGagaaccctggccttgtcggt	12	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152128299	T	T	152128299	3	4	9	1	0	0	0	0	1	0	0	0	13775	1290	45	3	1082	3	RPTN	1	152128299	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	152128299	97122322	1453	9604			7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152128537	152128537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacactggccttttctgtcCatttgaccatagtgggaact	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152128537	A	A	152128537	3	1	9	1	0	0	0	0	1	0	0	0	13775	594	21	2	1320	2	RPTN	1	152128537	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	238	152128537	97122084	1454	9605			7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152128587	152128587	+	Missense_Mutation	SNP	G	T	T													tctgtctggctgactgtagtGggaactctggccttgtctgt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152128587	T	T	152128587	3	4	9	1	0	0	0	0	1	0	0	0	13775	1348	47	2	1370	2	RPTN	1	152128587	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	152128587	97122034	1455	9606	51	2	7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152128594	152128594	+	Missense_Mutation	SNP	C	A	A													ggctgactgtagtgggaactCtggccttgtctgtccgtctg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152128594	A	A	152128594	3	1	9	1	0	0	0	0	1	0	0	0	13775	912	32	3	1377	3	RPTN	1	152128594	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	152128594	97122027	1456	9607	51	2	7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152128761	152128761	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctagcctctcagactgtcCacaataagagcctgatttct	6	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152128761	A	A	152128761	4	1	9	1	0	0	0	0	0	1	0	0	13775	603	21	2	1544	2	RPTN	1	152128761	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	167	152128761	97121860	1457	9608			7	10	32162803	9	8	1191	N	G_C	8.082454e-06
RPTN	126638	broad.mit.edu	37	chr1	152129151	152129151	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccatggtgggaatctcCgtcttgtctctcaggctgac	11	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152129151	A	A	152129151	4	1	9	1	0	0	0	0	0	1	0	0	13775	661	23	1	1934	1	RPTN	1	152129151	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	390	152129151	97121470	1458	9609			7	10	32162803	9	8	1191	N	G_C	8.082454e-06
HRNR	388697	broad.mit.edu	37	chr1	152186041	152186041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagacagaagagtgaccCaagcgagactcatatgggcc	11	11	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152186041	A	A	152186041	3	1	9	1	0	0	0	0	1	0	0	0	7426	593	21	2	492	2	HRNR	1	152186041	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56890	152186041	97064580	1459	9610			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152187540	152187540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgccccgaaccggaccCatgtcggccgcggctagggg	17	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152187540	A	A	152187540	3	1	9	1	0	0	0	0	1	0	0	0	7426	594	21	2	1991	2	HRNR	1	152187540	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1499	152187540	97063081	1460	9611			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152187579	152187579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatggccagatccagaccCttgtcggccgtggcccgaag	14	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152187579	A	A	152187579	3	1	9	1	0	0	0	0	1	0	0	0	7426	681	24	2	2030	2	HRNR	1	152187579	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	152187579	97063042	1461	9612			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152187657	152187657	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacgaacctgagctagatcCgtgtcgttcacccctagatg	10	12	1	4	rs61814937		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152187657	A	A	152187657	4	1	9	1	0	0	0	0	0	1	0	0	7426	661	23	1	2108	1	HRNR	1	152187657	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	152187657	97062964	1462	9613			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152187696	152187696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgtcctgatctagagcCgtgttgtccgtagccagagg	13	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152187696	A	A	152187696	3	1	9	1	0	0	0	0	1	0	0	0	7426	652	23	1	2147	1	HRNR	1	152187696	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	152187696	97062925	1463	9614			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188014	152188014	+	Missense_Mutation	SNP	G	T	T													acctgagctagctccatgttGgccacagctcgatgactgtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152188014	T	T	152188014	3	4	9	1	0	0	0	0	1	0	0	0	7426	1357	47	2	2465	2	HRNR	1	152188014	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	318	152188014	97062607	1464	9615	52	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188024	152188024	+	Silent	SNP	C	A	A													gctccatgttggccacagctCgatgactgtcctgatgcaga					rs142170860		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152188024	A	A	152188024	2	1	9	1	0	0	0	0	0	0	0	1	7426	871	31	3		3	HRNR	1	152188024	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	152188024	97062597	1465	9616	52	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188153	152188153	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaagccagaagagtgaccGgagccagactcatatgggcc	12	12	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152188153	T	T	152188153	2	4	9	1	0	0	0	0	0	0	0	1	7426	1103	39	1		1	HRNR	1	152188153	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	129	152188153	97062468	1466	9617			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188355	152188355	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catagctggaagatgaacctGagctagatccgtgttgttca	11	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152188355	T	T	152188355	4	4	9	1	0	0	0	0	0	1	0	0	7426	1294	45	3	2806	3	HRNR	1	152188355	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	202	152188355	97062266	1467	9618			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188413	152188413	+	Nonsense_Mutation	SNP	C	A	A													tgacctagagccgtgttgttCgtagctggaggagtgacctg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152188413	A	A	152188413	4	1	9	1	0	0	0	0	0	1	0	0	7426	893	31	3	2864	3	HRNR	1	152188413	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	152188413	97062208	1468	9619	53	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188420	152188420	+	Silent	SNP	G	T	T													gagccgtgttgttcgtagctGgaggagtgacctgagccaga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152188420	T	T	152188420	2	4	9	1	0	0	0	0	0	0	0	1	7426	1335	47	2		2	HRNR	1	152188420	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	152188420	97062201	1469	9620	53	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188472	152188472	+	Nonsense_Mutation	SNP	G	T	T													tgtaaccagaggactgccatGagctagactcatggtgacca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152188472	T	T	152188472	4	4	9	1	0	0	0	0	0	1	0	0	7426	1294	45	3	2923	3	HRNR	1	152188472	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	152188472	97062149	1470	9621	54	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152188482	152188482	+	Nonsense_Mutation	SNP	C	A	A													ggactgccatgagctagactCatggtgaccaaatccagaag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152188482	A	A	152188482	4	1	9	1	0	0	0	0	0	1	0	0	7426	835	29	3	2933	3	HRNR	1	152188482	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	152188482	97062139	1471	9622	54	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152191050	152191050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatagctggaagactgccCggaaccagacccatgtcggc	12	14	0	2	rs150117899	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152191050	A	A	152191050	3	1	9	1	0	0	0	0	1	0	0	0	7426	652	23	1	5501	1	HRNR	1	152191050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2568	152191050	97059571	1472	9623			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152191146	152191146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactgacgggagccagaccCatgctgaccatagctggaag	13	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152191146	A	A	152191146	3	1	9	1	0	0	0	0	1	0	0	0	7426	594	21	2	5597	2	HRNR	1	152191146	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	96	152191146	97059475	1473	9624			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152192304	152192304	+	Nonsense_Mutation	SNP	C	A	A													ggaatgacccgagctagatcCgtgttgaccgtagccagagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152192304	A	A	152192304	4	1	9	1	0	0	0	0	0	1	0	0	7426	661	23	1	6755	1	HRNR	1	152192304	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1158	152192304	97058317	1474	9625	55	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152192313	152192313	+	Missense_Mutation	SNP	C	A	A													cgagctagatccgtgttgacCgtagccagaggactgtcctg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152192313	A	A	152192313	3	1	9	1	0	0	0	0	1	0	0	0	7426	652	23	1	6764	1	HRNR	1	152192313	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	152192313	97058308	1475	9626	55	2	8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152193234	152193234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtggcccaaagactgacGggaaccagacccatgctgac	12	14	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152193234	T	T	152193234	3	4	9	1	0	0	0	0	1	0	0	0	7426	1116	39	1	7685	1	HRNR	1	152193234	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	921	152193234	97057387	1476	9627			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152193324	152193324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgtcctgacctagagcCgtgttgtccgtagccagagg	13	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152193324	A	A	152193324	3	1	9	1	0	0	0	0	1	0	0	0	7426	652	23	1	7775	1	HRNR	1	152193324	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	152193324	97057297	1477	9628			8	11	56890	20	16	7749	N	G_C	7.332405e-05
HRNR	388697	broad.mit.edu	37	chr1	152193789	152193789	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttcctcttggtgctggtGagtgtcatctctcagctttg	11	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152193789	T	T	152193789	3	4	9	1	0	0	0	0	1	0	0	0	7426	1290	45	3	8240	3	HRNR	1	152193789	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	465	152193789	97056832	1478	9629			8	11	56890	20	16	7749	N	G_C	7.332405e-05
FLG	2312	broad.mit.edu	37	chr1	152275827	152275827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctgattcaccctggccGgactgtgagtgtctagagct	12	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152275827	T	T	152275827	2	4	9	1	0	0	0	0	0	0	0	1	5979	1103	39	1		1	FLG	1	152275827	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	82038	152275827	96974794	1479	9630			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152275979	152275979	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggaggcatcagaccttcCctgggatgtggtgtggctgt	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152275979	A	A	152275979	4	1	9	1	0	0	0	0	0	1	0	0	5979	632	22	2	806	2	FLG	1	152275979	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	152	152275979	96974642	1480	9631			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152276477	152276477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctgactgctggtggtGggatccatgtctctctcctg	13	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152276477	T	T	152276477	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	1304	2	FLG	1	152276477	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	498	152276477	96974144	1481	9632			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152276894	152276894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctgattgttcgtcattacGagtttgtctgctggcacttc	9	10	2	1	rs113933537	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152276894	T	T	152276894	3	4	9	1	0	0	0	0	1	0	0	0	5979	1058	37	3	1721	3	FLG	1	152276894	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	417	152276894	96973727	1482	9633			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152276981	152276981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggctgtgatgggaccCtgagtgtccagacctatcta	14	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152276981	A	A	152276981	3	1	9	1	0	0	0	0	1	0	0	0	5979	681	24	2	1808	2	FLG	1	152276981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	152276981	96973640	1483	9634			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152277080	152277080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtgtcctgaccctcttGggacgctgagtgcctggagc	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152277080	T	T	152277080	3	4	9	1	0	0	0	0	1	0	0	0	5979	1357	47	2	1907	2	FLG	1	152277080	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99	152277080	96973541	1484	9635			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152277330	152277330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgactcttctgaatgtccCtcactatcactggcctgact	6	14	5	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152277330	A	A	152277330	3	1	9	1	0	0	0	0	1	0	0	0	5979	680	24	2	2157	2	FLG	1	152277330	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	250	152277330	96973291	1485	9636			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152277601	152277601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcgtgatgggacctgGggtgtctggagccgtgcctt	16	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152277601	T	T	152277601	3	4	9	1	0	0	0	0	1	0	0	0	5979	1232	43	2	2428	2	FLG	1	152277601	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	271	152277601	96973020	1486	9637			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152277902	152277902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctggatcctgactgccCacgggaggcatcagaccttc	10	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152277902	A	A	152277902	3	1	9	1	0	0	0	0	1	0	0	0	5979	594	21	2	2729	2	FLG	1	152277902	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	301	152277902	96972719	1487	9638			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152278052	152278052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtgtcctgaccgtattGggatgctgagtgcctggagc	15	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152278052	T	T	152278052	3	4	9	1	0	0	0	0	1	0	0	0	5979	1357	47	2	2879	2	FLG	1	152278052	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150	152278052	96972569	1488	9639			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152278993	152278993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcctctgcttgaccccGggtgtccacgaatggtgtcc	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152278993	T	T	152278993	3	4	9	1	0	0	0	0	1	0	0	0	5979	1116	39	1	3820	1	FLG	1	152278993	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	941	152278993	96971628	1489	9640			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152279722	152279722	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attgtccctggcccacctgcGagtgtccagagctgtcggcc	12	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279722	T	T	152279722	4	4	9	1	0	0	0	0	0	1	0	0	5979	1059	37	3	4549	3	FLG	1	152279722	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	729	152279722	96970899	1490	9641			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152279743	152279743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtccagagctgtcggccCgagaggaagcttcatggtga	15	9	1	3	rs148050570	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152279743	A	A	152279743	3	1	9	1	0	0	0	0	1	0	0	0	5979	652	23	1	4570	1	FLG	1	152279743	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	152279743	96970878	1491	9642			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152279810	152279810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctgattgttcatcgttacGagtttgtctgcttgcacttc	8	10	2	1	rs111618175	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279810	T	T	152279810	3	4	9	1	0	0	0	0	1	0	0	0	5979	1058	37	3	4637	3	FLG	1	152279810	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67	152279810	96970811	1492	9643			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152279846	152279846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctggatcctgagtgccCatgggaggcatcagaccttc	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152279846	A	A	152279846	3	1	9	1	0	0	0	0	1	0	0	0	5979	594	21	2	4673	2	FLG	1	152279846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	152279846	96970775	1493	9644			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152279965	152279965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctccactgcttgaccccGggtgtccatgaatggtgtcc	10	14	0	2	rs149160509		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279965	T	T	152279965	3	4	9	1	0	0	0	0	1	0	0	0	5979	1116	39	1	4792	1	FLG	1	152279965	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119	152279965	96970656	1494	9645			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152279996	152279997	+	Missense_Mutation	DNP	GG	TT	TT													aatggtgtcctgaccctcttGggacgttgagtgcctggagc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	152279997	TT	TT	152279996	3	4	9	1	0	0	0	0	1	0	0	0	5979	1357	47	2	4823	2	FLG	1	152279996	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	31	152279996	96970625	1495	9646			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152280080	152280080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtcccggtccgtccatGggcggactcagactgttcat	13	13	2	1	rs146540190		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152280080	T	T	152280080	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	4907	2	FLG	1	152280080	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84	152280080	96970541	1496	9647			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152280331	152280331	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgtccgtgcccaatgcctGagtgtctggagctgtctgct	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152280331	T	T	152280331	4	4	9	1	0	0	0	0	0	1	0	0	5979	1294	45	3	5158	3	FLG	1	152280331	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	251	152280331	96970290	1497	9648			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152280485	152280485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctctctgcagagtgccCatgaccggctctgtcttcgt	12	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152280485	A	A	152280485	3	1	9	1	0	0	0	0	1	0	0	0	5979	594	21	2	5312	2	FLG	1	152280485	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154	152280485	96970136	1498	9649			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152280563	152280563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgagcagatccatgatGgtttctggacgcagacccag	11	12	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152280563	T	T	152280563	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	5390	2	FLG	1	152280563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78	152280563	96970058	1499	9650			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152280839	152280839	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggaggcatcagaccttcCctgggatgtggtgtggctgt	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152280839	A	A	152280839	4	1	9	1	0	0	0	0	0	1	0	0	5979	632	22	2	5666	2	FLG	1	152280839	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	276	152280839	96969782	1500	9651			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152281010	152281010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgtgcctgatcataatGggatccttgtcttcctccag	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281010	T	T	152281010	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	5837	2	FLG	1	152281010	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	171	152281010	96969611	1501	9652			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152281424	152281424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggaagactctgtgtgacGagtgcctgattgtctggagc	15	7	2	4	rs146743261		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281424	T	T	152281424	3	4	9	1	0	0	0	0	1	0	0	0	5979	1058	37	3	6251	3	FLG	1	152281424	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	414	152281424	96969197	1502	9653			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152281522	152281522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatctcttgactgctccCaagcagatccaagatggttt	8	12	1	3	rs139914712		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152281522	A	A	152281522	3	1	9	1	0	0	0	0	1	0	0	0	5979	595	21	2	6349	2	FLG	1	152281522	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	152281522	96969099	1503	9654			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152281686	152281686	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgagtgtctagagctgtcGgcccgagaggaagcttcatg	15	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281686	T	T	152281686	2	4	9	1	0	0	0	0	0	0	0	1	5979	1103	39	1		1	FLG	1	152281686	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	164	152281686	96968935	1504	9655			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152281846	152281846	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggctgtgatgagaccctGagtgtccagaactatctacc	11	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281846	T	T	152281846	4	4	9	1	0	0	0	0	0	1	0	0	5979	1294	45	3	6673	3	FLG	1	152281846	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	160	152281846	96968775	1505	9656			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152281943	152281943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtgtcctgaccctcttGggacgctgagtgcctggagc	14	11	1	2	rs140164593		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281943	T	T	152281943	3	4	9	1	0	0	0	0	1	0	0	0	5979	1357	47	2	6770	2	FLG	1	152281943	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97	152281943	96968678	1506	9657			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152282027	152282027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggccctgtgcgtccatGggcggactcagactgttcat	14	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152282027	T	T	152282027	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	6854	2	FLG	1	152282027	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84	152282027	96968594	1507	9658			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152282432	152282432	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagctctctgcagagtgccCatgactggctctatcttctt	10	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152282432	G	G	152282432	3	3	9	1	0	0	0	0	1	0	0	0	5979	594	21	4	7259	4	FLG	1	152282432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	405	152282432	96968189	1508	9659			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152282663	152282663	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtctagagctgccggcccGagtggaaggttcatggtgac	16	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152282663	T	T	152282663	2	4	9	1	0	0	0	0	0	0	0	1	5979	1057	37	3		3	FLG	1	152282663	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	231	152282663	96967958	1509	9660			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152282690	152282690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttcatggtgacgtgaccCtgagtgcctggagccgtctc	14	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152282690	A	A	152282690	3	1	9	1	0	0	0	0	1	0	0	0	5979	681	24	2	7517	2	FLG	1	152282690	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	152282690	96967931	1510	9661			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152282705	152282705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccctgagtgcctggagcCgtctcctgattgttcctcat	10	13	2	3	rs137923075		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152282705	A	A	152282705	3	1	9	1	0	0	0	0	1	0	0	0	5979	652	23	1	7532	1	FLG	1	152282705	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	152282705	96967916	1511	9662			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283125	152283125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggggcccagcttgtccgtGggctgacactgactgtgtgt	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283125	T	T	152283125	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	7952	2	FLG	1	152283125	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	420	152283125	96967496	1512	9663			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283165	152283165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagtcttctgaatgtccCtcactgttagtgacctgact	8	11	4	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283165	A	A	152283165	3	1	9	1	0	0	0	0	1	0	0	0	5979	680	24	2	7992	2	FLG	1	152283165	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	152283165	96967456	1513	9664			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283200	152283200	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgactaccactggaccctcGgtgtccactgtctctgactg	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283200	T	T	152283200	2	4	9	1	0	0	0	0	0	0	0	1	5979	1124	39	1		1	FLG	1	152283200	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	152283200	96967421	1514	9665			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283284	152283284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctgactgctggtggcGggatccatgtctttctcctg	13	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283284	T	T	152283284	3	4	9	1	0	0	0	0	1	0	0	0	5979	1116	39	1	8111	1	FLG	1	152283284	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84	152283284	96967337	1515	9666			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283326	152283326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgatcttgcctgttcatGggatgacacagcctgtccat	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283326	T	T	152283326	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	8153	2	FLG	1	152283326	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42	152283326	96967295	1516	9667			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283434	152283434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcttcttgatggaaccCagggtgtctggagccatctc	11	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283434	A	A	152283434	3	1	9	1	0	0	0	0	1	0	0	0	5979	594	21	2	8261	2	FLG	1	152283434	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	152283434	96967187	1517	9668			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283513	152283513	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacccagacaacctctcGgagtcgtctgagtgtctctc	10	14	3	3	rs150992326	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283513	T	T	152283513	2	4	9	1	0	0	0	0	0	0	0	1	5979	1103	39	1		1	FLG	1	152283513	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	79	152283513	96967108	1518	9669			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283634	152283634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtctagagctgtcagccCaagaggcagcttcatggtga	13	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283634	A	A	152283634	3	1	9	1	0	0	0	0	1	0	0	0	5979	595	21	2	8461	2	FLG	1	152283634	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	121	152283634	96966987	1519	9670			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283824	152283824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctaccgattgctcatggtGggatccctgccttcctcctc	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283824	T	T	152283824	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	8651	2	FLG	1	152283824	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	190	152283824	96966797	1520	9671			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152283923	152283923	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagctgtctcgtgcctgctCgtggtgggatccttgtcttc	14	11	2	0	rs140288306		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283923	A	A	152283923	4	1	9	1	0	0	0	0	0	1	0	0	5979	893	31	3	8750	3	FLG	1	152283923	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99	152283923	96966698	1521	9672			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152284262	152284262	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgctggtggcgggatcCgtgtctttctcctggacttg	14	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152284262	A	A	152284262	4	1	9	1	0	0	0	0	0	1	0	0	5979	661	23	1	9089	1	FLG	1	152284262	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	339	152284262	96966359	1522	9673			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152284376	152284376	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgtctgcagagtgccCgtgaccggctctgtcttcgt	14	12	3	2	rs149106390	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152284376	G	G	152284376	3	3	9	1	0	0	0	0	1	0	0	0	5979	652	23	4	9203	4	FLG	1	152284376	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	152284376	96966245	1523	9674			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152285315	152285315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggaattctgtgtgtgacGagtgcctgattttctggagc	14	6	2	3	rs149385928	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152285315	T	T	152285315	3	4	9	1	0	0	0	0	1	0	0	0	5979	1058	37	3	10142	3	FLG	1	152285315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	939	152285315	96965306	1524	9675			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152285640	152285640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccgtctcctgattgttcCtcatttcgtgtttgtctgct	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152285640	A	A	152285640	3	1	9	1	0	0	0	0	1	0	0	0	5979	680	24	2	10467	2	FLG	1	152285640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	325	152285640	96964981	1525	9676			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152285757	152285757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgtccagacctatttacCgattgctcgtggtgggatcc	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152285757	A	A	152285757	2	1	9	1	0	0	0	0	0	0	0	1	5979	639	23	1		1	FLG	1	152285757	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	152285757	96964864	1526	9677			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152285802	152285802	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcctctgcttgacccCgggtgtccacgaatggtgtc	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152285802	A	A	152285802	2	1	9	1	0	0	0	0	0	0	0	1	5979	639	23	1		1	FLG	1	152285802	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	152285802	96964819	1527	9678			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152286119	152286119	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgactaccgctagacccccGgtgtccacgatcgctgactg	10	16	0	3	rs144799241		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152286119	T	T	152286119	2	4	9	1	0	0	0	0	0	0	0	1	5979	1115	39	1		1	FLG	1	152286119	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	317	152286119	96964502	1528	9679			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152286245	152286245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgatcttgcctgttcatGggatgatgcagtctgtccac	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152286245	T	T	152286245	3	4	9	1	0	0	0	0	1	0	0	0	5979	1348	47	2	11072	2	FLG	1	152286245	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126	152286245	96964376	1529	9680			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152286385	152286385	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccatctcttgactgctccCacgcagatccatgatggttt	8	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152286385	G	G	152286385	3	3	9	1	0	0	0	0	1	0	0	0	5979	595	21	4	11212	4	FLG	1	152286385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140	152286385	96964236	1530	9681			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152286624	152286624	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctaatagactatcagtGgtgtcataggcttcatcctg	8	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152286624	T	T	152286624	2	4	9	1	0	0	0	0	0	0	0	1	5979	1335	47	2		2	FLG	1	152286624	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	239	152286624	96963997	1531	9682			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG	2312	broad.mit.edu	37	chr1	152288006	152288006	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatctttttttctaggttAtattattacaatcattttcc	2	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152288006	G	G	152288006	1	3	9	0	1	0	0	0	0	0	0	0	5979	464	16	5		5	FLG	1	152288006	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	1382	152288006	96962615	1532	9683			9	12	82038	54	54	12180	N	GG_G_C_A	2.266716e-28
FLG2	388698	broad.mit.edu	37	chr1	152323605	152323605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtccatgagtagttccCtgtctcccatgacctgagga	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152323605	A	A	152323605	3	1	9	1	0	0	0	0	1	0	0	0	5980	680	24	2	522	2	FLG2	1	152323605	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35599	152323605	96927016	1533	9684			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152323752	152323752	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtcttccagttgtcctGgaacctgtctgtgtggactg	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152323752	C	C	152323752	2	2	9	1	0	0	0	0	0	0	0	1	5980	1335	47	4		4	FLG2	1	152323752	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	147	152323752	96926869	1534	9685			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152323830	152323830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtccatgtatagttccCtgtctcccgtgaatggcaga	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152323830	A	A	152323830	3	1	9	1	0	0	0	0	1	0	0	0	5980	680	24	2	747	2	FLG2	1	152323830	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	152323830	96926791	1535	9686			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152324008	152324008	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtggactgtccatgaccaGagtgagcatgtctagtggta	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152324008	T	T	152324008	3	4	9	1	0	0	0	0	1	0	0	0	5980	942	33	3	925	3	FLG2	1	152324008	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178	152324008	96926613	1536	9687			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152324270	152324270	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtatctgctgtttgtccatGagtagttccgtgtctctcat	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152324270	T	T	152324270	3	4	9	1	0	0	0	0	1	0	0	0	5980	1290	45	3	1187	3	FLG2	1	152324270	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	262	152324270	96926351	1537	9688			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152324442	152324442	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctggaccctgtctgtatGgtttgtccatgactagggtg	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152324442	T	T	152324442	2	4	9	1	0	0	0	0	0	0	0	1	5980	1335	47	2		2	FLG2	1	152324442	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	172	152324442	96926179	1538	9689			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152325049	152325049	+	Nonsense_Mutation	SNP	G	T	T													aatgtgtatgtgagactcctGagtacccttcactgtcactg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152325049	T	T	152325049	4	4	9	1	0	0	0	0	0	1	0	0	5980	1294	45	3	1966	3	FLG2	1	152325049	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	607	152325049	96925572	1539	9690	56	2	10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152325056	152325056	+	Missense_Mutation	SNP	C	A	A													atgtgagactcctgagtaccCttcactgtcactgtactcac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152325056	A	A	152325056	3	1	9	1	0	0	0	0	1	0	0	0	5980	681	24	2	1973	2	FLG2	1	152325056	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	152325056	96925565	1540	9691	56	2	10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152325698	152325698	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagatccactttggccgtGagtgtgtcctgaatgtgtgt	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152325698	T	T	152325698	3	4	9	1	0	0	0	0	1	0	0	0	5980	1290	45	3	2615	3	FLG2	1	152325698	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	642	152325698	96924923	1541	9692			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152325804	152325804	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactggaccctctctgtgtGgattttccatgatgatagtg	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152325804	T	T	152325804	2	4	9	1	0	0	0	0	0	0	0	1	5980	1335	47	2		2	FLG2	1	152325804	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	106	152325804	96924817	1542	9693			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152325911	152325911	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactctccatgttgagatcCggcttggccatgagtttgtt	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152325911	A	A	152325911	4	1	9	1	0	0	0	0	0	1	0	0	5980	661	23	1	2828	1	FLG2	1	152325911	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107	152325911	96924710	1543	9694			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152326562	152326562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtagtttcctgtctccCatgaactgtggatcctgact	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152326562	A	A	152326562	3	1	9	1	0	0	0	0	1	0	0	0	5980	594	21	2	3479	2	FLG2	1	152326562	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	651	152326562	96924059	1544	9695			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152327079	152327079	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatattgtccaaaaccagaGgattgtcctgaaccagtccc	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152327079	T	T	152327079	2	4	9	1	0	0	0	0	0	0	0	1	5980	987	35	2		2	FLG2	1	152327079	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	517	152327079	96923542	1545	9696			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152327138	152327138	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactgatctgagcctgatcCatgttgtccaaagcctgagt	11	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152327138	A	A	152327138	4	1	9	1	0	0	0	0	0	1	0	0	5980	603	21	2	4055	2	FLG2	1	152327138	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	152327138	96923483	1546	9697			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152327310	152327310	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgctgtccaaagccagaGgattttcctgagcctgactc	9	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152327310	T	T	152327310	2	4	9	1	0	0	0	0	0	0	0	1	5980	987	35	2		2	FLG2	1	152327310	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	172	152327310	96923311	1547	9698			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152327417	152327417	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctgacctgtgttgtcCaaatccaaaagtctgtcctg	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152327417	A	A	152327417	4	1	9	1	0	0	0	0	0	1	0	0	5980	603	21	2	4334	2	FLG2	1	152327417	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107	152327417	96923204	1548	9699			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152328228	152328228	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgttgtccaaaaccagaGgattgtcctgagccagaaac	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152328228	T	T	152328228	2	4	9	1	0	0	0	0	0	0	0	1	5980	987	35	2		2	FLG2	1	152328228	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	811	152328228	96922393	1549	9700			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152328507	152328507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggactgacctgagccCgatccatattggccaaagcc	10	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152328507	A	A	152328507	2	1	9	1	0	0	0	0	0	0	0	1	5980	639	23	1		1	FLG2	1	152328507	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	279	152328507	96922114	1550	9701			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152328546	152328546	+	Missense_Mutation	SNP	C	A	A													ccagtggattgacctgagccCaacccatgttgtccaaagcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152328546	A	A	152328546	3	1	9	1	0	0	0	0	1	0	0	0	5980	593	21	2	5463	2	FLG2	1	152328546	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	152328546	96922075	1551	9702	57	2	10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152328551	152328551	+	Missense_Mutation	SNP	C	A	A													ggattgacctgagcccaaccCatgttgtccaaagccagatg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152328551	A	A	152328551	3	1	9	1	0	0	0	0	1	0	0	0	5980	594	21	2	5468	2	FLG2	1	152328551	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5	152328551	96922070	1552	9703	57	2	10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152329499	152329499	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttctctaattcttgactGagtagagtttgattcatgcc	8	7	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152329499	T	T	152329499	3	4	9	1	0	0	0	0	1	0	0	0	5980	1299	45	3	6416	3	FLG2	1	152329499	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	948	152329499	96921122	1553	9704			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152329618	152329618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccagattccctagaaGggctaatgtgtgacttgttt	9	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152329618	T	T	152329618	3	4	9	1	0	0	0	0	1	0	0	0	5980	1000	35	2	6535	2	FLG2	1	152329618	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119	152329618	96921003	1554	9705			10	13	35599	23	21	6165	N	G_C	1.620018e-09
FLG2	388698	broad.mit.edu	37	chr1	152329769	152329769	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagctggataaattaccttGtcttcctagcctcctggagt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152329769	A	A	152329769	4	1	9	1	0	0	0	0	0	1	0	0	5980	1386	48	4	6686	4	FLG2	1	152329769	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	151	152329769	96920852	1555	9706			10	13	35599	23	21	6165	N	G_C	1.620018e-09
CRNN	49860	broad.mit.edu	37	chr1	152382504	152382504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtctcggtgtgtgaccCtgcctgtatctgagtgtgtc	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152382504	A	A	152382504	3	1	9	1	0	0	0	0	1	0	0	0	3924	681	24	2	437	2	CRNN	1	152382504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52735	152382504	96868117	1556	9707											
CRNN	49860	broad.mit.edu	37	chr1	152382999	152382999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtctgctctgtctgccCagagagttgtatctgcgggc	14	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152382999	A	A	152382999	3	1	9	1	0	0	0	0	1	0	0	0	3924	594	21	2	932	2	CRNN	1	152382999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	495	152382999	96867622	1557	9708											
KPRP	448834	broad.mit.edu	37	chr1	152732460	152732460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacctgttcagacttgcttCgtagaatgtgctccagtttg	9	10	1	2	rs146826460	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152732460	A	A	152732460	3	1	9	1	0	0	0	0	1	0	0	0	8507	883	31	3	398	3	KPRP	1	152732460	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	349461	152732460	96518161	1558	9709											
PGLYRP3	114771	broad.mit.edu	37	chr1	153274909	153274909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaatgtcacaaaagttcCgtgtgtccatgtgaaaggac	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153274909	A	A	153274909	3	1	9	1	0	0	0	0	1	0	0	0	11890	652	23	1	333	1	PGLYRP3	1	153274909	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	542449	153274909	95975712	1559	9710											
PGLYRP3	114771	broad.mit.edu	37	chr1	153275053	153275053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgtctctctggcttccCaagcagatcgtttgatgatg	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153275053	A	A	153275053	3	1	9	1	0	0	0	0	1	0	0	0	11890	595	21	2	477	2	PGLYRP3	1	153275053	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144	153275053	95975568	1560	9711											
PGLYRP3	114771	broad.mit.edu	37	chr1	153277474	153277474	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgttgttgtagccctGggtgtgcaagccttggatgt	15	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153277474	C	C	153277474	3	2	9	1	0	0	0	0	1	0	0	0	11890	1357	47	4	720	4	PGLYRP3	1	153277474	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2421	153277474	95973147	1561	9712											
PGLYRP3	114771	broad.mit.edu	37	chr1	153283035	153283035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattattaaacttgagaacGgtcttctcttgctcatcaaa	5	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153283035	T	T	153283035	1	4	9	0	1	0	0	0	0	0	0	0	11890	1131	39	1		1	PGLYRP3	1	153283035	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5561	153283035	95967586	1562	9713											
PGLYRP3	114771	broad.mit.edu	37	chr1	153283065	153283065	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcatcaaaagcacttctGatgcaagtaaataaaactta	5	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153283065	T	T	153283065	1	4	9	0	1	0	0	0	0	0	0	0	11890	1305	45	3		3	PGLYRP3	1	153283065	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	153283065	95967556	1563	9714											
S100A7A	338324	broad.mit.edu	37	chr1	153390681	153390681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgaaggagaacttcccCaatttcctcagtgcctgtgt	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153390681	A	A	153390681	2	1	9	1	0	0	0	0	0	0	0	1	13895	581	21	2		2	S100A7A	1	153390681	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	107616	153390681	95859940	1564	9715											
S100A7L2	645922	broad.mit.edu	37	chr1	153409566	153409566	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggaacagggtgccactcCatgcattatcttgtggtggt	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153409566	A	A	153409566	4	1	9	1	0	0	0	0	0	1	0	0	13896	603	21	2	35	2	S100A7L2	1	153409566	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18885	153409566	95841055	1565	9716											
S100A4	6275	broad.mit.edu	37	chr1	153516344	153516344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtccacctcgttgtccCtgttgctgtccaagttgctc	10	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153516344	A	A	153516344	3	1	9	1	0	0	0	0	1	0	0	0	13891	681	24	2	112	2	S100A4	1	153516344	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106778	153516344	95734277	1566	9717											
S100A4	6275	broad.mit.edu	37	chr1	153517085	153517085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgctgccctcctctgtGggaaatgccccacgtgggga	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153517085	T	T	153517085	1	4	9	0	1	0	0	0	0	0	0	0	13891	1363	47	2		2	S100A4	1	153517085	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	741	153517085	95733536	1567	9718											
S100A13	6284	broad.mit.edu	37	chr1	153591314	153591314	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttatttgggaagagtgcGgttctgctcggccctgatca	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153591314	T	T	153591314	1	4	9	0	1	0	0	0	0	0	0	0	13886	1131	39	1		1	S100A13	1	153591314	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	74229	153591314	95659307	1568	9719											
S100A1	6271	broad.mit.edu	37	chr1	153604234	153604234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctagacgagaatggagacGgggaggtggacttccaggag	18	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153604234	T	T	153604234	3	4	9	1	0	0	0	0	1	0	0	0	13882	1116	39	1	208	1	S100A1	1	153604234	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12920	153604234	95646387	1569	9720											
S100A1	6271	broad.mit.edu	37	chr1	153604356	153604356	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgcccttcctctccaccCtcccagacctgcctcttccc	4	24	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153604356	A	A	153604356	1	1	9	0	1	0	0	0	0	0	0	0	13882	696	24	2		2	S100A1	1	153604356	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	122	153604356	95646265	1570	9721											
C1orf77	26097	broad.mit.edu	37	chr1	153615731	153615731	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccgaggtggacgagcCgtagctccccgaatgggctt	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153615731	A	A	153615731	2	1	9	1	0	0	0	0	0	0	0	1	2081	639	23	1		1	C1orf77	1	153615731	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11375	153615731	95634890	1571	9722											
ILF2	3608	broad.mit.edu	37	chr1	153638116	153638116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctatggctactaaataCagaatcagcaacaaatgcaa	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153638116	A	A	153638116	1	1	9	0	1	0	0	0	0	0	0	0	7781	493	17	3		3	ILF2	1	153638116	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22385	153638116	95612505	1572	9723											
INTS3	65123	broad.mit.edu	37	chr1	153742733	153742733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcagctctttctggccCacaatattcccctggagacc	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153742733	A	A	153742733	3	1	9	1	0	0	0	0	1	0	0	0	7849	594	21	2	2543	2	INTS3	1	153742733	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104617	153742733	95507888	1573	9724											
GATAD2B	57459	broad.mit.edu	37	chr1	153790467	153790467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcccaaaaacagagacaGgattagacacggccctccaa	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153790467	T	T	153790467	1	4	9	0	1	0	0	0	0	0	0	0	6323	1015	35	2		2	GATAD2B	1	153790467	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47734	153790467	95460154	1574	9725											
GATAD2B	57459	broad.mit.edu	37	chr1	153792138	153792138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccattctggaactggaacGgggactggaagcctcattgt	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153792138	T	T	153792138	3	4	9	1	0	0	0	0	1	0	0	0	6323	1116	39	1	1408	1	GATAD2B	1	153792138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1671	153792138	95458483	1575	9726											
GATAD2B	57459	broad.mit.edu	37	chr1	153800583	153800583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgaggcctgagattccCgttaagtttttcttcatagc	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153800583	A	A	153800583	3	1	9	1	0	0	0	0	1	0	0	0	6323	652	23	1	1580	1	GATAD2B	1	153800583	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8445	153800583	95450038	1576	9727											
GATAD2B	57459	broad.mit.edu	37	chr1	153800777	153800777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgctgggtccaagctcCgcttcaacagattcaagcga	9	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153800777	A	A	153800777	3	1	9	1	0	0	0	0	1	0	0	0	6323	652	23	1	1774	1	GATAD2B	1	153800777	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	194	153800777	95449844	1577	9728											
GATAD2B	57459	broad.mit.edu	37	chr1	153825739	153825739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtcttcacacccttccCtgccatctcacacacagact	5	17	3	1	rs36043142		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153825739	A	A	153825739	1	1	9	0	1	0	0	0	0	0	0	0	6323	696	24	2		2	GATAD2B	1	153825739	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24962	153825739	95424882	1578	9729											
SLC39A1	27173	broad.mit.edu	37	chr1	153932786	153932786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagagctgcacccagccCgatgcctagaggtgtcatgc	12	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153932786	A	A	153932786	3	1	9	1	0	0	0	0	1	0	0	0	14726	652	23	1	215	1	SLC39A1	1	153932786	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107047	153932786	95317835	1579	9730											
JTB	10899	broad.mit.edu	37	chr1	153949420	153949420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaccaaaaacaaacgacGggacgtgtcgggttcccaga	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153949420	T	T	153949420	1	4	9	0	1	0	0	0	0	0	0	0	8037	1131	39	1		1	JTB	1	153949420	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16634	153949420	95301201	1580	9731											
JTB	10899	broad.mit.edu	37	chr1	153949720	153949720	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaggcctcccggcaccCgcaagcatggagcgccaagt	13	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153949720	A	A	153949720	2	1	9	1	0	0	0	0	0	0	0	1	8037	639	23	1		1	JTB	1	153949720	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	300	153949720	95300901	1581	9732											
RAB13	5872	broad.mit.edu	37	chr1	153954901	153954901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacttgagcaagatgtccCgggccagggaactaaaagcc	12	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153954901	A	A	153954901	3	1	9	1	0	0	0	0	1	0	0	0	13007	652	23	1	119	1	RAB13	1	153954901	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5181	153954901	95295720	1582	9733											
RAB13	5872	broad.mit.edu	37	chr1	153954988	153954988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatacttcctctcttggtcGgggatgggggtgtggatctc	14	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153954988	T	T	153954988	1	4	9	0	1	0	0	0	0	0	0	0	13007	1131	39	1		1	RAB13	1	153954988	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	87	153954988	95295633	1583	9734											
NUP210L	91181	broad.mit.edu	37	chr1	153974258	153974258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagtactcttatctcccCgatatcttgtttgtggctaa	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153974258	A	A	153974258	3	1	9	1	0	0	0	0	1	0	0	0	10856	652	23	1	552	1	NUP210L	1	153974258	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19270	153974258	95276363	1584	9735											
NUP210L	91181	broad.mit.edu	37	chr1	153998075	153998075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctatagaagtgacttcCaatacagcagtacctgcaat	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153998075	A	A	153998075	3	1	9	1	0	0	0	0	1	0	0	0	10856	593	21	2	1645	2	NUP210L	1	153998075	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23817	153998075	95252546	1585	9736											
NUP210L	91181	broad.mit.edu	37	chr1	154042758	154042758	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcacaataccatgtaaccGggtctgcccactgccatcat	6	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154042758	T	T	154042758	2	4	9	1	0	0	0	0	0	0	0	1	10856	1115	39	1		1	NUP210L	1	154042758	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44683	154042758	95207863	1586	9737											
NUP210L	91181	broad.mit.edu	37	chr1	154090239	154090239	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggattttgtacatctcGggccaaaacagtactattcc	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154090239	T	T	154090239	2	4	9	1	0	0	0	0	0	0	0	1	10856	1124	39	1		1	NUP210L	1	154090239	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47481	154090239	95160382	1587	9738											
NUP210L	91181	broad.mit.edu	37	chr1	154098953	154098953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagattctgaaaatcagccCcacagtaacacaaacctgaa	6	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154098953	A	A	154098953	1	1	9	0	1	0	0	0	0	0	0	0	10856	638	22	2		2	NUP210L	1	154098953	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8714	154098953	95151668	1588	9739											
NUP210L	91181	broad.mit.edu	37	chr1	154112355	154112355	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacactaaaatcacatctcCttgtttctcctctttttcca	2	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154112355	A	A	154112355	4	1	9	1	0	0	0	0	0	1	0	0	10856	690	24	2	5170	2	NUP210L	1	154112355	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13402	154112355	95138266	1589	9740											
TPM3	7170	broad.mit.edu	37	chr1	154130048	154130048	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagttaaaggtcagcttccCgcaggctggcctcaggcgga	13	12	3	0	rs1051229		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154130048	A	A	154130048	1	1	9	0	1	0	0	0	0	0	0	0	16531	667	23	1		1	TPM3	1	154130048	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	17693	154130048	95120573	1590	9741											
TPM3	7170	broad.mit.edu	37	chr1	154142913	154142913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttttccagcttggctacCgatctctcagcaaactcagc	7	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154142913	A	A	154142913	2	1	9	1	0	0	0	0	0	0	0	1	16531	639	23	1		1	TPM3	1	154142913	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12865	154142913	95107708	1591	9742											
TPM3	7170	broad.mit.edu	37	chr1	154143094	154143094	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatacctctaaatgttttGggttctgccctataaatccc	5	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154143094	T	T	154143094	1	4	9	0	1	0	0	0	0	0	0	0	16531	1363	47	2		2	TPM3	1	154143094	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	181	154143094	95107527	1592	9743											
TPM3	7170	broad.mit.edu	37	chr1	154144467	154144467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaaacaaaaccacacCacatatataaccttgctgtg	3	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154144467	A	A	154144467	1	1	9	0	1	0	0	0	0	0	0	0	16531	609	21	2		2	TPM3	1	154144467	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1373	154144467	95106154	1593	9744											
TPM3	7170	broad.mit.edu	37	chr1	154144505	154144505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcttaatggttagtacCttttcttcagcagcactcag	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154144505	A	A	154144505	1	1	9	0	1	0	0	0	0	0	0	0	16531	695	24	2		2	TPM3	1	154144505	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	154144505	95106116	1594	9745											
TPM3	7170	broad.mit.edu	37	chr1	154144561	154144561	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtccatcagtctaatctgctCatccatctctcggcaacggc	7	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154144561	A	A	154144561	1	1	9	0	1	0	0	0	0	0	0	0	16531	835	29	3		3	TPM3	1	154144561	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	154144561	95106060	1595	9746											
TPM3	7170	broad.mit.edu	37	chr1	154164410	154164410	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcttctgcctgcttctgctCagcttcagcttgctctgccc	7	16	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154164410	A	A	154164410	4	1	9	1	0	0	0	0	0	1	0	0	16531	835	29	3	1199	3	TPM3	1	154164410	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19849	154164410	95086211	1596	9747											
C1orf43	25912	broad.mit.edu	37	chr1	154186894	154186894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaattctggacttgtgGgactcctcactgaagcattc	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154186894	T	T	154186894	1	4	9	0	1	0	0	0	0	0	0	0	2062	1247	43	2		2	C1orf43	1	154186894	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22484	154186894	95063727	1597	9748											
UBAP2L	9898	broad.mit.edu	37	chr1	154221896	154221896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcgacgacacaatcccCatcactggtgcagtatggtg	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154221896	A	A	154221896	3	1	9	1	0	0	0	0	1	0	0	0	16964	594	21	2	1238	2	UBAP2L	1	154221896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35002	154221896	95028725	1598	9749											
UBAP2L	9898	broad.mit.edu	37	chr1	154229873	154229873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgccgttgttgcctaatcCgtatattatggctccagggc	10	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154229873	A	A	154229873	3	1	9	1	0	0	0	0	1	0	0	0	16964	652	23	1	2479	1	UBAP2L	1	154229873	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7977	154229873	95020748	1599	9750											
UBAP2L	9898	broad.mit.edu	37	chr1	154231517	154231517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttccattggtgagtatgtGggatagagctttggaaaaga	13	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154231517	T	T	154231517	1	4	9	0	1	0	0	0	0	0	0	0	16964	1363	47	2		2	UBAP2L	1	154231517	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1644	154231517	95019104	1600	9751											
UBAP2L	9898	broad.mit.edu	37	chr1	154239019	154239019	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacgggcgtgccagatatctCgggttctgtgtactccaaaa	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154239019	A	A	154239019	4	1	9	1	0	0	0	0	0	1	0	0	16964	893	31	3	3093	3	UBAP2L	1	154239019	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7502	154239019	95011602	1601	9752											
HAX1	10456	broad.mit.edu	37	chr1	154246310	154246310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggagggacagacacttcGggactcaatgcttaagtatc	12	9	1	1	rs147036748		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154246310	T	T	154246310	3	4	9	1	0	0	0	0	1	0	0	0	7041	1116	39	1	387	1	HAX1	1	154246310	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7291	154246310	95004311	1602	9753											
HAX1	10456	broad.mit.edu	37	chr1	154247929	154247929	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagagactacagtaaccCgacacgaagcagatagcagt	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154247929	A	A	154247929	2	1	9	1	0	0	0	0	0	0	0	1	7041	644	23	1		1	HAX1	1	154247929	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1619	154247929	95002692	1603	9754											
AQP10	89872	broad.mit.edu	37	chr1	154295570	154295570	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctgctttctgtgcttcGggagccacctatgttctcta	9	12	3	0	rs138299081		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154295570	T	T	154295570	2	4	9	1	0	0	0	0	0	0	0	1	824	1103	39	1		1	AQP10	1	154295570	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47641	154295570	94955051	1604	9755											
ATP8B2	57198	broad.mit.edu	37	chr1	154300273	154300273	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagcctccattgtccctGggatggataccttgagagct	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154300273	T	T	154300273	1	4	9	0	1	0	0	0	0	0	0	0	1199	1363	47	2		2	ATP8B2	1	154300273	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	4703	154300273	94950348	1605	9756											
ATP8B2	57198	broad.mit.edu	37	chr1	154306605	154306605	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgatctgtgaacctccCaacaacaaactggacaaatt	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154306605	A	A	154306605	2	1	9	1	0	0	0	0	0	0	0	1	1199	581	21	2		2	ATP8B2	1	154306605	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6332	154306605	94944016	1606	9757											
ATP8B2	57198	broad.mit.edu	37	chr1	154313418	154313418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggacgcctgcagaagccCgcaccaccaccctaaacgag	10	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154313418	A	A	154313418	3	1	9	1	0	0	0	0	1	0	0	0	1199	652	23	1	1402	1	ATP8B2	1	154313418	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6813	154313418	94937203	1607	9758											
ATP8B2	57198	broad.mit.edu	37	chr1	154317908	154317908	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgcctcctgctggtgcatGggcgctggtcctacctgcga	14	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154317908	C	C	154317908	3	2	9	1	0	0	0	0	1	0	0	0	1199	1348	47	4	2900	4	ATP8B2	1	154317908	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4490	154317908	94932713	1608	9759											
ATP8B2	57198	broad.mit.edu	37	chr1	154318754	154318754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccctaagctgtatgagccGggccagctgaaccttctctt	9	13	1	2	rs143978883		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154318754	T	T	154318754	2	4	9	1	0	0	0	0	0	0	0	1	1199	1103	39	1		1	ATP8B2	1	154318754	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	846	154318754	94931867	1609	9760											
ATP8B2	57198	broad.mit.edu	37	chr1	154319122	154319122	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgacacaggctactggacGgccatcaaccacttcttcat	7	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154319122	T	T	154319122	2	4	9	1	0	0	0	0	0	0	0	1	1199	1103	39	1		1	ATP8B2	1	154319122	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	368	154319122	94931499	1610	9761											
ATP8B2	57198	broad.mit.edu	37	chr1	154319244	154319244	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggtttgtgggtaagtcccCgtggcctccttgaatcggtg	14	11	0	1	rs142151506	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154319244	G	G	154319244	1	3	9	0	1	0	0	0	0	0	0	0	1199	667	23	4		4	ATP8B2	1	154319244	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	122	154319244	94931377	1611	9762											
IL6R	3570	broad.mit.edu	37	chr1	154407131	154407131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcgtcgccagtagtgtcGggagcaagttcagcaaaact	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154407131	T	T	154407131	3	4	9	1	0	0	0	0	1	0	0	0	7772	1116	39	1	609	1	IL6R	1	154407131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87887	154407131	94843490	1612	9763											
TDRD10	126668	broad.mit.edu	37	chr1	154515285	154515285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagccttctttgcagtccCgttggaaatgaggtgagcaa	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154515285	A	A	154515285	3	1	9	1	0	0	0	0	1	0	0	0	15853	652	23	1	517	1	TDRD10	1	154515285	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108154	154515285	94735336	1613	9764											
TDRD10	126668	broad.mit.edu	37	chr1	154517326	154517326	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcatgttcattgattttGgacagttggccaccatccct	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154517326	T	T	154517326	4	4	9	1	0	0	0	0	0	1	0	0	15853	1349	47	2	891	2	TDRD10	1	154517326	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2041	154517326	94733295	1614	9765											
TDRD10	126668	broad.mit.edu	37	chr1	154517337	154517337	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgattttggacagttggcCaccatccctgtgcagtctct	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154517337	A	A	154517337	2	1	9	1	0	0	0	0	0	0	0	1	15853	581	21	2		2	TDRD10	1	154517337	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	154517337	94733284	1615	9766											
UBE2Q1	55585	broad.mit.edu	37	chr1	154523383	154523383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgggtgtggcaagtgtcCgaatctcctgagtcctggct	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154523383	A	A	154523383	1	1	9	0	1	0	0	0	0	0	0	0	16995	667	23	1		1	UBE2Q1	1	154523383	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6046	154523383	94727238	1616	9767											
UBE2Q1	55585	broad.mit.edu	37	chr1	154523414	154523414	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcctggctccagcctcacCgtttttttcgtggatctgca	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154523414	A	A	154523414	3	1	9	1	0	0	0	0	1	0	0	0	16995	666	23	1	39	1	UBE2Q1	1	154523414	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	154523414	94727207	1617	9768											
UBE2Q1	55585	broad.mit.edu	37	chr1	154524176	154524176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctatcacccagcccgtaGgggtgtgtgctgtaaagctc	12	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154524176	T	T	154524176	1	4	9	0	1	0	0	0	0	0	0	0	16995	1015	35	2		2	UBE2Q1	1	154524176	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	762	154524176	94726445	1618	9769											
CHRNB2	1141	broad.mit.edu	37	chr1	154543652	154543652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccagggctgactgtgccCatcctttggcagtgctgacg	14	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154543652	A	A	154543652	1	1	9	0	1	0	0	0	0	0	0	0	3422	609	21	2		2	CHRNB2	1	154543652	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19476	154543652	94706969	1619	9770											
ADAR	103	broad.mit.edu	37	chr1	154557500	154557500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttctttttggagacccGggacaattcattccgtggcc	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154557500	T	T	154557500	2	4	9	1	0	0	0	0	0	0	0	1	281	1115	39	1		1	ADAR	1	154557500	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13848	154557500	94693121	1620	9771											
ADAR	103	broad.mit.edu	37	chr1	154574011	154574011	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcggtttcaggaacactgttCgtatttctcttgatttgcat	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154574011	A	A	154574011	2	1	9	1	0	0	0	0	0	0	0	1	281	871	31	3		3	ADAR	1	154574011	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16511	154574011	94676610	1621	9772											
ADAR	103	broad.mit.edu	37	chr1	154574346	154574346	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtctggtcttaccactcCgctgtgctggttccaagcct	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154574346	A	A	154574346	4	1	9	1	0	0	0	0	0	1	0	0	281	661	23	1	2964	1	ADAR	1	154574346	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	335	154574346	94676275	1622	9773											
KCNN3	3782	broad.mit.edu	37	chr1	154705511	154705511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagacagacacctttccCacagtatgtgtggggcacca	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154705511	A	A	154705511	3	1	9	1	0	0	0	0	1	0	0	0	8150	594	21	2	657	2	KCNN3	1	154705511	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131165	154705511	94545110	1623	9774											
KCNN3	3782	broad.mit.edu	37	chr1	154821677	154821678	+	Intron	DNP	CC	AA	AA													cactcaaccagctctgtctcCcactcacacagcacagaaat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	154821678	AA	AA	154821677	1	1	9	0	1	0	0	0	0	0	0	0	8150	638	22	2		2	KCNN3	1	154821677	Intron	DNP	CC	TCGA-05-4396-01A-21D-1855-08	116166	154821677	94428944	1624	9775											
KCNN3	3782	broad.mit.edu	37	chr1	154821734	154821734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaaattccatcttcccCaaatggagactagctccacc	5	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154821734	A	A	154821734	1	1	9	0	1	0	0	0	0	0	0	0	8150	609	21	2		2	KCNN3	1	154821734	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	154821734	94428887	1625	9776											
PBXIP1	57326	broad.mit.edu	37	chr1	154918757	154918757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctagaattctggaagtGggacttctggtgccaggcct	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154918757	T	T	154918757	3	4	9	1	0	0	0	0	1	0	0	0	11590	1348	47	2	810	2	PBXIP1	1	154918757	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97023	154918757	94331864	1626	9777											
PBXIP1	57326	broad.mit.edu	37	chr1	154919797	154919797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggagggtcaggatgtgtGggtaaataggaaacattcct	16	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154919797	T	T	154919797	1	4	9	0	1	0	0	0	0	0	0	0	11590	1363	47	2		2	PBXIP1	1	154919797	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1040	154919797	94330824	1627	9778											
SHC1	6464	broad.mit.edu	37	chr1	154936214	154936214	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactcccaaacgaggtccCgagagttagggaatagggtg	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154936214	A	A	154936214	1	1	9	0	1	0	0	0	0	0	0	0	14383	667	23	1		1	SHC1	1	154936214	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	16417	154936214	94314407	1628	9779											
SHC1	6464	broad.mit.edu	37	chr1	154938060	154938060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcaaatgcttaggctgccCactctgcaagccagtgagca	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154938060	A	A	154938060	3	1	9	1	0	0	0	0	1	0	0	0	14383	594	21	2	177	2	SHC1	1	154938060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1846	154938060	94312561	1629	9780											
SHC1	6464	broad.mit.edu	37	chr1	154940672	154940672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcctttgctctgttcccCaactcaccggatccccgccg	7	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154940672	A	A	154940672	1	1	9	0	1	0	0	0	0	0	0	0	14383	609	21	2		2	SHC1	1	154940672	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2612	154940672	94309949	1630	9781											
SHC1	6464	broad.mit.edu	37	chr1	154940688	154940688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaactcaccggatcccCgccggatgcaaatgagatag	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154940688	A	A	154940688	3	1	9	1	0	0	0	0	1	0	0	0	14383	652	23	1	990	1	SHC1	1	154940688	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	154940688	94309933	1631	9782											
SHC1	6464	broad.mit.edu	37	chr1	154940901	154940901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccctcttcctagattttGgcctcctaactagatctccc	5	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154940901	T	T	154940901	1	4	9	0	1	0	0	0	0	0	0	0	14383	1363	47	2		2	SHC1	1	154940901	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	213	154940901	94309720	1632	9783											
SHC1	6464	broad.mit.edu	37	chr1	154940958	154940958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttctggtccgtctgccCaccttcaccaacctgtttgc	8	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154940958	A	A	154940958	1	1	9	0	1	0	0	0	0	0	0	0	14383	609	21	2		2	SHC1	1	154940958	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	154940958	94309663	1633	9784											
ZBTB7B	51043	broad.mit.edu	37	chr1	154987614	154987614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgactgtgagcgagccCgccagtatctggaggccttt	14	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154987614	A	A	154987614	3	1	9	1	0	0	0	0	1	0	0	0	17680	652	23	1	480	1	ZBTB7B	1	154987614	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46656	154987614	94263007	1634	9785											
DCST2	127579	broad.mit.edu	37	chr1	155004050	155004050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaccctggttttctcacGgctggcaagtccacagagcg	12	13	1	2	rs138461125		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155004050	T	T	155004050	3	4	9	1	0	0	0	0	1	0	0	0	4336	1130	39	1	1630	1	DCST2	1	155004050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16436	155004050	94246571	1635	9786											
ADAM15	8751	broad.mit.edu	37	chr1	155026921	155026921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtgccctgagctggcGggaatctgtacacactcaga	11	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155026921	T	T	155026921	3	4	9	1	0	0	0	0	1	0	0	0	237	1116	39	1	573	1	ADAM15	1	155026921	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22871	155026921	94223700	1636	9787											
ADAM15	8751	broad.mit.edu	37	chr1	155030278	155030278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagggtcattctgaccccCggctggatttgctcagtgcc	12	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155030278	A	A	155030278	1	1	9	0	1	0	0	0	0	0	0	0	237	667	23	1		1	ADAM15	1	155030278	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3357	155030278	94220343	1637	9788											
TRIM46	80128	broad.mit.edu	37	chr1	155148519	155148519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgtggtggagcggtacCgccagagtgtgagtgtggga	20	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155148519	A	A	155148519	3	1	9	1	0	0	0	0	1	0	0	0	16646	652	23	1	491	1	TRIM46	1	155148519	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118241	155148519	94102102	1638	9789											
TRIM46	80128	broad.mit.edu	37	chr1	155149728	155149728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggacacggtacagaccCagatctgtgagctggaggag	14	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155149728	A	A	155149728	3	1	9	1	0	0	0	0	1	0	0	0	16646	595	21	2	889	2	TRIM46	1	155149728	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1209	155149728	94100893	1639	9790											
THBS3	7059	broad.mit.edu	37	chr1	155171676	155171676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcagcaggaaatttgaaGgtaagaaggggcgggggttg	19	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155171676	T	T	155171676	1	4	9	0	1	0	0	0	0	0	0	0	15978	1015	35	2		2	THBS3	1	155171676	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21948	155171676	94078945	1640	9791											
GBA	2629	broad.mit.edu	37	chr1	155210486	155210486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagccatgatgcttaccCtactcaaaggcttgggacat	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155210486	A	A	155210486	3	1	9	1	0	0	0	0	1	0	0	0	6328	681	24	2	1600	2	GBA	1	155210486	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38810	155210486	94040135	1641	9792											
FAM189B	10712	broad.mit.edu	37	chr1	155223962	155223962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagcatgacacagagcacCgaaagcaaggagaagaagga	12	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155223962	A	A	155223962	2	1	9	1	0	0	0	0	0	0	0	1	5564	639	23	1		1	FAM189B	1	155223962	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13476	155223962	94026659	1642	9793											
SCAMP3	10067	broad.mit.edu	37	chr1	155228555	155228555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttggttcttggtgagcGgaccccagggcagttaagag	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155228555	T	T	155228555	1	4	9	0	1	0	0	0	0	0	0	0	13984	1131	39	1		1	SCAMP3	1	155228555	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4593	155228555	94022066	1643	9794											
CLK2	1196	broad.mit.edu	37	chr1	155234031	155234031	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtctttcggatcatccGggaagggataggacccaaga	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155234031	T	T	155234031	2	4	9	1	0	0	0	0	0	0	0	1	3569	1115	39	1		1	CLK2	1	155234031	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5476	155234031	94016590	1644	9795											
CLK2	1196	broad.mit.edu	37	chr1	155239353	155239353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctgctgcgctggctgcGgtaactgctgttctcccgct	13	15	1	0	rs139555196		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155239353	T	T	155239353	3	4	9	1	0	0	0	0	1	0	0	0	3569	1116	39	1	1215	1	CLK2	1	155239353	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5322	155239353	94011268	1645	9796											
CLK2	1196	broad.mit.edu	37	chr1	155239481	155239481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgccggtcatacaccctcCggtcggacgaacgatcatca	9	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155239481	A	A	155239481	3	1	9	1	0	0	0	0	1	0	0	0	3569	652	23	1	1343	1	CLK2	1	155239481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	128	155239481	94011140	1646	9797											
CLK2	1196	broad.mit.edu	37	chr1	155240723	155240723	+	Missense_Mutation	SNP	C	A	A													atagtgttcacggtaactccCccggctgcctcgctctgagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155240723	A	A	155240723	3	1	9	1	0	0	0	0	1	0	0	0	3569	623	22	2	1498	2	CLK2	1	155240723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1242	155240723	94009898	1647	9798	58	2									
CLK2	1196	broad.mit.edu	37	chr1	155240725	155240725	+	Missense_Mutation	SNP	C	A	A													agtgttcacggtaactccccCggctgcctcgctctgaggag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155240725	A	A	155240725	3	1	9	1	0	0	0	0	1	0	0	0	3569	652	23	1	1500	1	CLK2	1	155240725	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2	155240725	94009896	1648	9799	58	2									
PKLR	5313	broad.mit.edu	37	chr1	155261655	155261655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcataagtggacctggcGggcagcctgggcagagcggg	19	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155261655	T	T	155261655	3	4	9	1	0	0	0	0	1	0	0	0	12071	1116	39	1	222	1	PKLR	1	155261655	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20930	155261655	93988966	1649	9800											
FDPS	2224	broad.mit.edu	37	chr1	155279985	155279985	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataggagatgctattgccCggctcaaggaggtgagggat	16	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155279985	A	A	155279985	2	1	9	1	0	0	0	0	0	0	0	1	5860	643	23	1		1	FDPS	1	155279985	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18330	155279985	93970636	1650	9801											
RUSC1	23623	broad.mit.edu	37	chr1	155291630	155291630	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctccagcacgtctccctGggcctgcacttgtcccgccg	9	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155291630	T	T	155291630	2	4	9	1	0	0	0	0	0	0	0	1	13861	1335	47	2		2	RUSC1	1	155291630	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11645	155291630	93958991	1651	9802											
RUSC1	23623	broad.mit.edu	37	chr1	155292187	155292187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggcggagcaggatctccCtacctctgagctcttagagg	14	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155292187	A	A	155292187	3	1	9	1	0	0	0	0	1	0	0	0	13861	681	24	2	625	2	RUSC1	1	155292187	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	557	155292187	93958434	1652	9803											
RUSC1	23623	broad.mit.edu	37	chr1	155294229	155294229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccgcccacgtgctccccGgggctccgcaggcaggactg	14	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155294229	T	T	155294229	1	4	9	0	1	0	0	0	0	0	0	0	13861	1103	39	1		1	RUSC1	1	155294229	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2042	155294229	93956392	1653	9804											
RUSC1	23623	broad.mit.edu	37	chr1	155295667	155295667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctagcaccaagcagttGgagctgtggttttccagtct	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155295667	T	T	155295667	3	4	9	1	0	0	0	0	1	0	0	0	13861	1339	47	2	1980	2	RUSC1	1	155295667	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1438	155295667	93954954	1654	9805											
RUSC1	23623	broad.mit.edu	37	chr1	155296474	155296474	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgctgcagccattgtcGgtgctcactttccacctgga	9	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155296474	T	T	155296474	2	4	9	1	0	0	0	0	0	0	0	1	13861	1103	39	1		1	RUSC1	1	155296474	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	807	155296474	93954147	1655	9806											
RUSC1	23623	broad.mit.edu	37	chr1	155296560	155296560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccctgcccctccaggccCacctccagctctgcagcaga	9	21	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155296560	A	A	155296560	3	1	9	1	0	0	0	0	1	0	0	0	13861	594	21	2	2208	2	RUSC1	1	155296560	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	155296560	93954061	1656	9807											
RUSC1	23623	broad.mit.edu	37	chr1	155296891	155296891	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggagtgcctgggggcccCgcagaaaatgagaatggagc	16	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155296891	A	A	155296891	2	1	9	1	0	0	0	0	0	0	0	1	13861	639	23	1		1	RUSC1	1	155296891	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	331	155296891	93953730	1657	9808											
RUSC1	23623	broad.mit.edu	37	chr1	155297907	155297907	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgggttttctggaagtGggttgagctgtgaccctatg	14	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155297907	T	T	155297907	1	4	9	0	1	0	0	0	0	0	0	0	13861	1363	47	2		2	RUSC1	1	155297907	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1016	155297907	93952714	1658	9809											
ASH1L	55870	broad.mit.edu	37	chr1	155307977	155307977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggggtacaggttgactgGggttcttgactactttcctc	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155307977	T	T	155307977	2	4	9	1	0	0	0	0	0	0	0	1	1045	1219	43	2		2	ASH1L	1	155307977	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10070	155307977	93942644	1659	9810											
ASH1L	55870	broad.mit.edu	37	chr1	155311743	155311743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccgagaaatcttttttgGgagtgagcttcttggggaag	13	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155311743	T	T	155311743	3	4	9	1	0	0	0	0	1	0	0	0	1045	1232	43	2	466	2	ASH1L	1	155311743	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3766	155311743	93938878	1660	9811											
ASH1L	55870	broad.mit.edu	37	chr1	155322539	155322539	+	Missense_Mutation	SNP	G	T	T													acaaatttctttgaagatctGggctaggcgggctgcccgag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155322539	T	T	155322539	3	4	9	1	0	0	0	0	1	0	0	0	1045	1357	47	2	1618	2	ASH1L	1	155322539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10796	155322539	93928082	1661	9812	59	2									
ASH1L	55870	broad.mit.edu	37	chr1	155322548	155322548	+	Missense_Mutation	SNP	G	T	T													tttgaagatctgggctaggcGggctgcccgagccacttcaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155322548	T	T	155322548	3	4	9	1	0	0	0	0	1	0	0	0	1045	1116	39	1	1627	1	ASH1L	1	155322548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	155322548	93928073	1662	9813	59	2									
ASH1L	55870	broad.mit.edu	37	chr1	155322601	155322601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctgccaaccgtcttgttCgaacagatcgagctgtctgc	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155322601	A	A	155322601	3	1	9	1	0	0	0	0	1	0	0	0	1045	884	31	3	1680	3	ASH1L	1	155322601	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	155322601	93928020	1663	9814											
ASH1L	55870	broad.mit.edu	37	chr1	155324306	155324306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcagatcccattccaacGggtatataatgatgctgagt	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155324306	T	T	155324306	3	4	9	1	0	0	0	0	1	0	0	0	1045	1116	39	1	1775	1	ASH1L	1	155324306	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1705	155324306	93926315	1664	9815											
ASH1L	55870	broad.mit.edu	37	chr1	155330190	155330190	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccaatccggtatactcCattaacagacctgtaaagag	8	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155330190	A	A	155330190	4	1	9	1	0	0	0	0	0	1	0	0	1045	603	21	2	2261	2	ASH1L	1	155330190	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5884	155330190	93920431	1665	9816											
ASH1L	55870	broad.mit.edu	37	chr1	155448184	155448184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggttgttcagaagaacGgtgttctctgtgtttgtgac	14	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155448184	T	T	155448184	3	4	9	1	0	0	0	0	1	0	0	0	1045	1116	39	1	4521	1	ASH1L	1	155448184	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	117994	155448184	93802437	1666	9817											
ASH1L	55870	broad.mit.edu	37	chr1	155448846	155448846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggggatatttctttttcCgttttcgtttctgccttttc	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155448846	A	A	155448846	3	1	9	1	0	0	0	0	1	0	0	0	1045	652	23	1	5183	1	ASH1L	1	155448846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	662	155448846	93801775	1667	9818											
ASH1L	55870	broad.mit.edu	37	chr1	155449598	155449598	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagcaagacttgatacCgtattatggagtttggattg	13	5	0	2	rs144945141		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155449598	A	A	155449598	2	1	9	1	0	0	0	0	0	0	0	1	1045	639	23	1		1	ASH1L	1	155449598	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	752	155449598	93801023	1668	9819											
ASH1L	55870	broad.mit.edu	37	chr1	155491218	155491218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacttctctcttactgacCaatgtgccagtactgatggc	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155491218	A	A	155491218	3	1	9	1	0	0	0	0	1	0	0	0	1045	593	21	2	8909	2	ASH1L	1	155491218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41620	155491218	93759403	1669	9820											
MSTO1	55154	broad.mit.edu	37	chr1	155581966	155581966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcttttgtcactcaccccCgtccagggcttccagatcct	6	16	3	1	rs112951003		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155581966	A	A	155581966	1	1	9	0	1	0	0	0	0	0	0	0	9988	667	23	1		1	MSTO1	1	155581966	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	90748	155581966	93668655	1670	9821											
MSTO1	55154	broad.mit.edu	37	chr1	155582980	155582980	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaacacgttgctttgcCcagtcagtggtgctgagggg	15	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155582980	A	A	155582980	2	1	9	1	0	0	0	0	0	0	0	1	9988	610	22	2		2	MSTO1	1	155582980	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1014	155582980	93667641	1671	9822											
YY1AP1	55249	broad.mit.edu	37	chr1	155646321	155646321	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtataattcaatattaatatGaccaaggaaagtgttacctg	7	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155646321	T	T	155646321	1	4	9	0	1	0	0	0	0	0	0	0	17635	1305	45	3		3	YY1AP1	1	155646321	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	63341	155646321	93604300	1672	9823											
DAP3	7818	broad.mit.edu	37	chr1	155697408	155697408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttaaagctcatctttGggtgaaaaattgtcgggatc	9	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155697408	T	T	155697408	3	4	9	1	0	0	0	0	1	0	0	0	4267	1357	47	2	504	2	DAP3	1	155697408	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51087	155697408	93553213	1673	9824											
DAP3	7818	broad.mit.edu	37	chr1	155697423	155697423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgggtgaaaaattgtcGggatcttctgcagtccagct	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155697423	T	T	155697423	3	4	9	1	0	0	0	0	1	0	0	0	4267	1116	39	1	519	1	DAP3	1	155697423	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	155697423	93553198	1674	9825											
GON4L	54856	broad.mit.edu	37	chr1	155724143	155724143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagctctgataccctcGggacccttgatactttcctc	7	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155724143	T	T	155724143	1	4	9	0	1	0	0	0	0	0	0	0	6636	1131	39	1		1	GON4L	1	155724143	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26720	155724143	93526478	1675	9826											
GON4L	54856	broad.mit.edu	37	chr1	155734801	155734801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctctcacctggagttctGggacagaaagcacagattcc	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155734801	T	T	155734801	3	4	9	1	0	0	0	0	1	0	0	0	6636	1348	47	2	2424	2	GON4L	1	155734801	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10658	155734801	93515820	1676	9827											
SYT11	23208	broad.mit.edu	37	chr1	155838230	155838230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtggactataacttccCgaaaaaagccctggtggtga	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155838230	A	A	155838230	3	1	9	1	0	0	0	0	1	0	0	0	15586	652	23	1	515	1	SYT11	1	155838230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103429	155838230	93412391	1677	9828											
SYT11	23208	broad.mit.edu	37	chr1	155850961	155850961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcataggtctgtctccCtttttcttatctctttgggg	9	9	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155850961	A	A	155850961	1	1	9	0	1	0	0	0	0	0	0	0	15586	696	24	2		2	SYT11	1	155850961	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12731	155850961	93399660	1678	9829											
SYT11	23208	broad.mit.edu	37	chr1	155851135	155851135	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctgcctgatatcagcatcGagttcctcgttatcgacttc	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155851135	T	T	155851135	4	4	9	1	0	0	0	0	0	1	0	0	15586	1059	37	3	1146	3	SYT11	1	155851135	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	174	155851135	93399486	1679	9830											
RIT1	6016	broad.mit.edu	37	chr1	155870300	155870300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttcctacgtatctccCgtacaagggcatggaaaaca	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155870300	A	A	155870300	3	1	9	1	0	0	0	0	1	0	0	0	13497	652	23	1	124	1	RIT1	1	155870300	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19165	155870300	93380321	1680	9831											
RIT1	6016	broad.mit.edu	37	chr1	155870378	155870378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaagggacagctgaattctCgggccaaggccaatccttct	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155870378	A	A	155870378	3	1	9	1	0	0	0	0	1	0	0	0	13497	884	31	3	202	3	RIT1	1	155870378	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	155870378	93380243	1681	9832											
RIT1	6016	broad.mit.edu	37	chr1	155880204	155880204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattaagatatttttatgGggtatatttggaaacataag	8	2	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155880204	T	T	155880204	1	4	9	0	1	0	0	0	0	0	0	0	13497	1247	43	2		2	RIT1	1	155880204	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9826	155880204	93370417	1682	9833											
KIAA0907	22889	broad.mit.edu	37	chr1	155885721	155885721	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcggactctgtttttattcCagtcactggaaaggctggtg	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155885721	A	A	155885721	4	1	9	1	0	0	0	0	0	1	0	0	8269	603	21	2	264	2	KIAA0907	1	155885721	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5517	155885721	93364900	1683	9834											
KIAA0907	22889	broad.mit.edu	37	chr1	155887315	155887315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaagcagtccagattccCgttcatctggtagctcctct	7	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155887315	A	A	155887315	3	1	9	1	0	0	0	0	1	0	0	0	8269	652	23	1	445	1	KIAA0907	1	155887315	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1594	155887315	93363306	1684	9835											
KIAA0907	22889	broad.mit.edu	37	chr1	155891406	155891406	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacactacttatagcagaGggttgtgtatagcctgaggg	15	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155891406	T	T	155891406	2	4	9	1	0	0	0	0	0	0	0	1	8269	987	35	2		2	KIAA0907	1	155891406	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4091	155891406	93359215	1685	9836											
RXFP4	339403	broad.mit.edu	37	chr1	155912087	155912087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgcctgctgcgtttccCcagcaggtactggctggggg	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155912087	A	A	155912087	3	1	9	1	0	0	0	0	1	0	0	0	13873	623	22	2	589	2	RXFP4	1	155912087	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20681	155912087	93338534	1686	9837											
ARHGEF2	9181	broad.mit.edu	37	chr1	155921539	155921539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcccatctcacctcttgcGgtgatctcagctgatttcca	6	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155921539	T	T	155921539	3	4	9	1	0	0	0	0	1	0	0	0	905	1116	39	1	779	1	ARHGEF2	1	155921539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9452	155921539	93329082	1687	9838											
ARHGEF2	9181	broad.mit.edu	37	chr1	155936554	155936554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaatggaaaaggcatgaGggtaccgcacactcactacc	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155936554	T	T	155936554	1	4	9	0	1	0	0	0	0	0	0	0	905	1015	35	2		2	ARHGEF2	1	155936554	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15015	155936554	93314067	1688	9839											
SSR2	6746	broad.mit.edu	37	chr1	155981632	155981632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcgcctgtcaaactccCgctgagccaggattcctccc	8	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155981632	A	A	155981632	3	1	9	1	0	0	0	0	1	0	0	0	15309	652	23	1	149	1	SSR2	1	155981632	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45078	155981632	93268989	1689	9840											
ROBLD3	28956	broad.mit.edu	37	chr1	156024769	156024769	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgcagaccacggaccCgagcggcgagcgctgcagtg	17	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156024769	A	A	156024769	1	1	9	0	1	0	0	0	0	0	0	0	13623	667	23	1		1	ROBLD3	1	156024769	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43137	156024769	93225852	1690	9841											
ROBLD3	28956	broad.mit.edu	37	chr1	156025163	156025163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgcctacgaccggaacGggaaccaagcgtttaatgaa	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156025163	T	T	156025163	3	4	9	1	0	0	0	0	1	0	0	0	13623	1116	39	1	184	1	ROBLD3	1	156025163	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	394	156025163	93225458	1691	9842											
RAB25	57111	broad.mit.edu	37	chr1	156039364	156039364	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgatctgctacatgccaaGagtttagcacatggcaaatg	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156039364	T	T	156039364	1	4	9	0	1	0	0	0	0	0	0	0	13020	957	33	3		3	RAB25	1	156039364	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14201	156039364	93211257	1692	9843											
MEX3A	92312	broad.mit.edu	37	chr1	156047009	156047009	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gattgctgcgtcggggctccCcgccaggaagtcgttttcat	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156047009	G	G	156047009	3	3	9	1	0	0	0	0	1	0	0	0	9602	623	22	4	647	4	MEX3A	1	156047009	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7645	156047009	93203612	1693	9844											
SEMA4A	64218	broad.mit.edu	37	chr1	156130801	156130801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggctccacacatcgcGggtggctagagtctgcaagg	15	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156130801	T	T	156130801	3	4	9	1	0	0	0	0	1	0	0	0	14144	1116	39	1	817	1	SEMA4A	1	156130801	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83792	156130801	93119820	1694	9845											
SEMA4A	64218	broad.mit.edu	37	chr1	156144970	156144970	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggactgtgtccttgccCgggacccccactgtgcctgg	14	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156144970	A	A	156144970	2	1	9	1	0	0	0	0	0	0	0	1	14144	643	23	1		1	SEMA4A	1	156144970	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14169	156144970	93105651	1695	9846											
PAQR6	79957	broad.mit.edu	37	chr1	156213643	156213643	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacctttgacagaatataGgggcatcttcagcctggaca	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156213643	T	T	156213643	1	4	9	0	1	0	0	0	0	0	0	0	11533	1015	35	2		2	PAQR6	1	156213643	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	68673	156213643	93036978	1696	9847											
PAQR6	79957	broad.mit.edu	37	chr1	156213726	156213726	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcaagagccccctcacGgtccctctcacactctgcca	5	21	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156213726	T	T	156213726	1	4	9	0	1	0	0	0	0	0	0	0	11533	1116	39	1		1	PAQR6	1	156213726	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	156213726	93036895	1697	9848											
PAQR6	79957	broad.mit.edu	37	chr1	156213849	156213849	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccccacctgattaggccCaaatctgggctcctcgtcag	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156213849	A	A	156213849	1	1	9	0	1	0	0	0	0	0	0	0	11533	594	21	2		2	PAQR6	1	156213849	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	156213849	93036772	1698	9849											
PAQR6	79957	broad.mit.edu	37	chr1	156216080	156216080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagggcgtcactgtgccCggaccctttccctccatctg	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156216080	A	A	156216080	1	1	9	0	1	0	0	0	0	0	0	0	11533	667	23	1		1	PAQR6	1	156216080	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2231	156216080	93034541	1699	9850											
SMG5	23381	broad.mit.edu	37	chr1	156221119	156221119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaattatccagccctaccCgttctccctaggaatgctcg	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156221119	A	A	156221119	1	1	9	0	1	0	0	0	0	0	0	0	14910	667	23	1		1	SMG5	1	156221119	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5039	156221119	93029502	1700	9851											
SMG5	23381	broad.mit.edu	37	chr1	156230272	156230272	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgagcaggggccgatcCgtgtcaaagttaaagcgtct	14	9	2	1	rs35831149	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156230272	A	A	156230272	2	1	9	1	0	0	0	0	0	0	0	1	14910	639	23	1		1	SMG5	1	156230272	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9153	156230272	93020349	1701	9852											
SMG5	23381	broad.mit.edu	37	chr1	156235863	156235863	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatcttccaagtctgatcGggactcctggctattcattt	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156235863	T	T	156235863	2	4	9	1	0	0	0	0	0	0	0	1	14910	1124	39	1		1	SMG5	1	156235863	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5591	156235863	93014758	1702	9853											
SMG5	23381	broad.mit.edu	37	chr1	156236360	156236360	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactctggaatgccgggacGggattctcgccctcttccag	11	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156236360	T	T	156236360	2	4	9	1	0	0	0	0	0	0	0	1	14910	1103	39	1		1	SMG5	1	156236360	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	497	156236360	93014261	1703	9854											
SMG5	23381	broad.mit.edu	37	chr1	156238105	156238105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgccaggagacagtttcCgagtctcacacttcttcagt	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156238105	A	A	156238105	3	1	9	1	0	0	0	0	1	0	0	0	14910	652	23	1	2295	1	SMG5	1	156238105	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1745	156238105	93012516	1704	9855											
TMEM79	84283	broad.mit.edu	37	chr1	156255087	156255087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagagaagagctcacccCaggccttggttcccaatggc	10	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156255087	A	A	156255087	3	1	9	1	0	0	0	0	1	0	0	0	16326	595	21	2	72	2	TMEM79	1	156255087	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16982	156255087	92995534	1705	9856											
TMEM79	84283	broad.mit.edu	37	chr1	156255666	156255666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcccttgcctactatacGgggcatatgccttcctgccg	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156255666	T	T	156255666	3	4	9	1	0	0	0	0	1	0	0	0	16326	1116	39	1	651	1	TMEM79	1	156255666	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	579	156255666	92994955	1706	9857											
TMEM79	84283	broad.mit.edu	37	chr1	156255803	156255803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagaagaaagggggcatcGggaagtggacttgaggaggg	21	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156255803	T	T	156255803	1	4	9	0	1	0	0	0	0	0	0	0	16326	1131	39	1		1	TMEM79	1	156255803	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	137	156255803	92994818	1707	9858											
C1orf85	112770	broad.mit.edu	37	chr1	156264306	156264306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggaggatatggtcttccCaaaggctttgctgccgtatc	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156264306	A	A	156264306	3	1	9	1	0	0	0	0	1	0	0	0	2084	593	21	2	807	2	C1orf85	1	156264306	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8503	156264306	92986315	1708	9859											
C1orf85	112770	broad.mit.edu	37	chr1	156264496	156264496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagttccaccctctaattgGgatgaactctctcctctgca	6	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156264496	T	T	156264496	1	4	9	0	1	0	0	0	0	0	0	0	2084	1247	43	2		2	C1orf85	1	156264496	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	190	156264496	92986125	1709	9860											
CCT3	7203	broad.mit.edu	37	chr1	156279016	156279016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccagcatcaggagcccCgccttgccggctctggtcat	12	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156279016	A	A	156279016	3	1	9	1	0	0	0	0	1	0	0	0	2984	652	23	1	29	1	CCT3	1	156279016	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14520	156279016	92971605	1710	9861											
CCT3	7203	broad.mit.edu	37	chr1	156286921	156286921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacaaaaaggaaacacacGggaagaaaagtcttgttttt	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156286921	T	T	156286921	1	4	9	0	1	0	0	0	0	0	0	0	2984	1131	39	1		1	CCT3	1	156286921	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7905	156286921	92963700	1711	9862											
CCT3	7203	broad.mit.edu	37	chr1	156287302	156287302	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctccatctggagaattcGggtgaagtcctcctctcgtg	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156287302	T	T	156287302	2	4	9	1	0	0	0	0	0	0	0	1	2984	1124	39	1		1	CCT3	1	156287302	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	381	156287302	92963319	1712	9863											
CCT3	7203	broad.mit.edu	37	chr1	156303291	156303291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcttaaaatatgacacaGgtgttacttctaatttttcc	4	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156303291	T	T	156303291	1	4	9	0	1	0	0	0	0	0	0	0	2984	1015	35	2		2	CCT3	1	156303291	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15989	156303291	92947330	1713	9864											
RHBG	57127	broad.mit.edu	37	chr1	156337524	156337524	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgagttcctgaacacacGggatgcttacactgccaggc	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156337524	T	T	156337524	1	4	9	0	1	0	0	0	0	0	0	0	13433	1131	39	1		1	RHBG	1	156337524	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	34233	156337524	92913097	1714	9865											
RHBG	57127	broad.mit.edu	37	chr1	156347160	156347160	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcttcctgcagcgttacGgcttcagcagcgtgggcttc	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156347160	T	T	156347160	3	4	9	1	0	0	0	0	1	0	0	0	13433	1116	39	1	262	1	RHBG	1	156347160	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9636	156347160	92903461	1715	9866											
RHBG	57127	broad.mit.edu	37	chr1	156348110	156348110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgggctcgtcctttcgcGggttctgtacaggccccagc	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156348110	T	T	156348110	3	4	9	1	0	0	0	0	1	0	0	0	13433	1116	39	1	607	1	RHBG	1	156348110	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	950	156348110	92902511	1716	9867											
RHBG	57127	broad.mit.edu	37	chr1	156352612	156352612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccatgcaccagctcttcGggctgtttgtcacactgatg	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156352612	T	T	156352612	3	4	9	1	0	0	0	0	1	0	0	0	13433	1116	39	1	1216	1	RHBG	1	156352612	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4502	156352612	92898009	1717	9868											
MEF2D	4209	broad.mit.edu	37	chr1	156452277	156452277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgtggctcattgtactcCgtgtacttgagcagcacctt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156452277	A	A	156452277	2	1	9	1	0	0	0	0	0	0	0	1	9551	639	23	1		1	MEF2D	1	156452277	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	99665	156452277	92798344	1718	9869											
IQGAP3	128239	broad.mit.edu	37	chr1	156505035	156505035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggccacatatcgcatccCatacctggggacaaagaaac	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156505035	A	A	156505035	3	1	9	1	0	0	0	0	1	0	0	0	7886	594	21	2	1512	2	IQGAP3	1	156505035	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52758	156505035	92745586	1719	9870											
IQGAP3	128239	broad.mit.edu	37	chr1	156506973	156506973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggctgttgcacatacGgaatttggtccacagatgag	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156506973	T	T	156506973	3	4	9	1	0	0	0	0	1	0	0	0	7886	1130	39	1	1521	1	IQGAP3	1	156506973	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1938	156506973	92743648	1720	9871											
IQGAP3	128239	broad.mit.edu	37	chr1	156513882	156513882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagggttgctggctgtcCttgctctagtctcatgggca	13	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156513882	A	A	156513882	1	1	9	0	1	0	0	0	0	0	0	0	7886	696	24	2		2	IQGAP3	1	156513882	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6909	156513882	92736739	1721	9872											
GPATCH4	54865	broad.mit.edu	37	chr1	156565123	156565123	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctttcttcggctgcatGggtcagcatatgccctgctc	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156565123	T	T	156565123	3	4	9	1	0	0	0	0	1	0	0	0	6658	1348	47	2	121	2	GPATCH4	1	156565123	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51241	156565123	92685498	1722	9873											
NES	10763	broad.mit.edu	37	chr1	156641032	156641032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaagccatcctgctccCtcagattcagctctgcctca	7	16	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156641032	A	A	156641032	3	1	9	1	0	0	0	0	1	0	0	0	10432	681	24	2	1921	2	NES	1	156641032	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75909	156641032	92609589	1723	9874											
NES	10763	broad.mit.edu	37	chr1	156641484	156641484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccaggttctcttgtccCgcagacttcagtgattctag	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156641484	A	A	156641484	2	1	9	1	0	0	0	0	0	0	0	1	10432	639	23	1		1	NES	1	156641484	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	452	156641484	92609137	1724	9875											
NES	10763	broad.mit.edu	37	chr1	156642839	156642839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggccaaggtaggggtacGggcctggaggaattcttggt	18	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156642839	T	T	156642839	3	4	9	1	0	0	0	0	1	0	0	0	10432	1116	39	1	3728	1	NES	1	156642839	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1355	156642839	92607782	1725	9876											
ISG20L2	81875	broad.mit.edu	37	chr1	156696823	156696823	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtcataaagcacatctcCgttgtagttgacaatgctac	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156696823	A	A	156696823	4	1	9	1	0	0	0	0	0	1	0	0	7925	661	23	1	451	1	ISG20L2	1	156696823	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53984	156696823	92553798	1726	9877											
MRPL24	79590	broad.mit.edu	37	chr1	156707501	156707501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttagggataattctccCtgatcgtgtggagactcgta	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156707501	A	A	156707501	3	1	9	1	0	0	0	0	1	0	0	0	9884	681	24	2	207	2	MRPL24	1	156707501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10678	156707501	92543120	1727	9878											
MRPL24	79590	broad.mit.edu	37	chr1	156708203	156708203	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccactttgccctgcttccCggcatccttgccttctagga	7	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156708203	A	A	156708203	3	1	9	1	0	0	0	0	1	0	0	0	9884	652	23	1	455	1	MRPL24	1	156708203	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	702	156708203	92542418	1728	9879											
PRCC	5546	broad.mit.edu	37	chr1	156756632	156756632	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctatcaaggctgctgccaAgagtgctgccctgcaggtga	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156756632	G	G	156756632	3	3	9	1	0	0	0	0	1	0	0	0	12553	72	3	5	759	5	PRCC	1	156756632	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	48429	156756632	92493989	1729	9880											
SH2D2A	9047	broad.mit.edu	37	chr1	156778952	156778952	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttcccccatctacctgcaGggagaccttcttgcacctac	6	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156778952	C	C	156778952	1	2	9	0	1	0	0	0	0	0	0	0	14345	1015	35	4		4	SH2D2A	1	156778952	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22320	156778952	92471669	1730	9881											
SH2D2A	9047	broad.mit.edu	37	chr1	156779038	156779038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagctcttccgtaggacaGggtgcccaagggtggcgggt	16	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156779038	T	T	156779038	3	4	9	1	0	0	0	0	1	0	0	0	14345	1000	35	2	218	2	SH2D2A	1	156779038	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86	156779038	92471583	1731	9882											
INSRR	3645	broad.mit.edu	37	chr1	156811572	156811572	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtctgtctcatacacgtcccGagtcatcccgaagtctggaa	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156811572	T	T	156811572	2	4	9	1	0	0	0	0	0	0	0	1	7844	1057	37	3		3	INSRR	1	156811572	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32534	156811572	92439049	1732	9883											
INSRR	3645	broad.mit.edu	37	chr1	156815556	156815556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcggcctcaggatcccCgtcttcgccgtcgaagcgcg	11	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156815556	A	A	156815556	3	1	9	1	0	0	0	0	1	0	0	0	7844	652	23	1	1915	1	INSRR	1	156815556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3984	156815556	92435065	1733	9884											
INSRR	3645	broad.mit.edu	37	chr1	156819145	156819145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttccaagcagaggcgcGggttgaaggcgaagtagatc	16	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156819145	T	T	156819145	3	4	9	1	0	0	0	0	1	0	0	0	7844	1116	39	1	2623	1	INSRR	1	156819145	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3589	156819145	92431476	1734	9885											
INSRR	3645	broad.mit.edu	37	chr1	156821025	156821025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcttcaccactgttctGggagtgttggaggaaggagt	13	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156821025	T	T	156821025	1	4	9	0	1	0	0	0	0	0	0	0	7844	1363	47	2		2	INSRR	1	156821025	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1880	156821025	92429596	1735	9886											
NTRK1	4914	broad.mit.edu	37	chr1	156849152	156849152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacagcaccgactattacCgtgtaagggtcctttgtccc	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156849152	A	A	156849152	3	1	9	1	0	0	0	0	1	0	0	0	10801	652	23	1	2232	1	NTRK1	1	156849152	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28127	156849152	92401469	1736	9887											
NTRK1	4914	broad.mit.edu	37	chr1	156849215	156849215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtagacaccctggatccCaagaccactgagagcctgcc	9	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156849215	A	A	156849215	1	1	9	0	1	0	0	0	0	0	0	0	10801	609	21	2		2	NTRK1	1	156849215	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	63	156849215	92401406	1737	9888											
PEAR1	375033	broad.mit.edu	37	chr1	156880144	156880144	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaactgcgtgtgtgcaccCggattccggggcccctcctg	14	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156880144	A	A	156880144	2	1	9	1	0	0	0	0	0	0	0	1	11806	639	23	1		1	PEAR1	1	156880144	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30929	156880144	92370477	1738	9889											
ARHGEF11	9826	broad.mit.edu	37	chr1	156916777	156916777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatggggccttcctccCggagcttcttcatggcttca	11	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156916777	A	A	156916777	3	1	9	1	0	0	0	0	1	0	0	0	898	652	23	1	2229	1	ARHGEF11	1	156916777	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36633	156916777	92333844	1739	9890											
ARHGEF11	9826	broad.mit.edu	37	chr1	156918196	156918196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccatgtcaacatcactgcGagagcggggcacgttctctg	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156918196	T	T	156918196	3	4	9	1	0	0	0	0	1	0	0	0	898	1058	37	3	2744	3	ARHGEF11	1	156918196	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1419	156918196	92332425	1740	9891											
ARHGEF11	9826	broad.mit.edu	37	chr1	156925514	156925514	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctttgagaagagcttttGggcttcccaatgtatttgag	11	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156925514	T	T	156925514	2	4	9	1	0	0	0	0	0	0	0	1	898	1335	47	2		2	ARHGEF11	1	156925514	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7318	156925514	92325107	1741	9892											
ARHGEF11	9826	broad.mit.edu	37	chr1	156926313	156926313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctctcgaagacggatccCagcatggctcatgtaggtat	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156926313	A	A	156926313	3	1	9	1	0	0	0	0	1	0	0	0	898	594	21	2	3210	2	ARHGEF11	1	156926313	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	799	156926313	92324308	1742	9893											
ARHGEF11	9826	broad.mit.edu	37	chr1	156933331	156933331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgttgttgaaataacccGggtcatagtcttcctctggg	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156933331	T	T	156933331	3	4	9	1	0	0	0	0	1	0	0	0	898	1116	39	1	3789	1	ARHGEF11	1	156933331	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7018	156933331	92317290	1743	9894											
FCRL5	83416	broad.mit.edu	37	chr1	157514286	157514286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagggtcactgggttccCgctgatgggctggaaggagc	18	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157514286	A	A	157514286	3	1	9	1	0	0	0	0	1	0	0	0	5855	652	23	1	2375	1	FCRL5	1	157514286	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	580955	157514286	91736335	1744	9895											
FCRL4	83417	broad.mit.edu	37	chr1	157550073	157550073	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgcatattgtgtactcGggaaactaaaaaggaatggc	11	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157550073	T	T	157550073	1	4	9	0	1	0	0	0	0	0	0	0	5854	1131	39	1		1	FCRL4	1	157550073	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35787	157550073	91700548	1745	9896											
FCRL4	83417	broad.mit.edu	37	chr1	157557182	157557182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttgggagctggagttccGggtacgtgctccagtctgac	16	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157557182	T	T	157557182	3	4	9	1	0	0	0	0	1	0	0	0	5854	1116	39	1	848	1	FCRL4	1	157557182	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7109	157557182	91693439	1746	9897											
FCRL3	115352	broad.mit.edu	37	chr1	157668219	157668219	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcactgagggaggatcctcGggtcttacattggtaatttc	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157668219	T	T	157668219	2	4	9	1	0	0	0	0	0	0	0	1	5853	1124	39	1		1	FCRL3	1	157668219	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	111037	157668219	91582402	1747	9898											
FCRL1	115350	broad.mit.edu	37	chr1	157766845	157766845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtttgagaaccagtcccCagaggaaagaaagaacatgg	12	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157766845	A	A	157766845	1	1	9	0	1	0	0	0	0	0	0	0	5851	609	21	2		2	FCRL1	1	157766845	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	98626	157766845	91483776	1748	9899											
CD5L	922	broad.mit.edu	37	chr1	157803012	157803012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagccacatcttcctggtGggtgcagtcgtgaaaccccc	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157803012	T	T	157803012	3	4	9	1	0	0	0	0	1	0	0	0	3057	1348	47	2	42	2	CD5L	1	157803012	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36167	157803012	91447609	1749	9900											
KIRREL	55243	broad.mit.edu	37	chr1	158059455	158059455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcagccgggcctgggcGggctggtactgcagttttta	17	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158059455	T	T	158059455	1	4	9	0	1	0	0	0	0	0	0	0	8395	1131	39	1		1	KIRREL	1	158059455	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	256443	158059455	91191166	1750	9901											
CD1D	912	broad.mit.edu	37	chr1	158147076	158147076	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaatttgcactcttttccCtacatatggtccaccgggtt	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158147076	A	A	158147076	1	1	9	0	1	0	0	0	0	0	0	0	3007	696	24	2		2	CD1D	1	158147076	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	87621	158147076	91103545	1751	9902											
CD1D	912	broad.mit.edu	37	chr1	158151204	158151205	+	Intron	DNP	CG	AT	AT													ctttatgctggctgctctccCggccacttgctacacgcctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	158151205	AT	AT	158151204	1	1	9	0	1	0	0	0	0	0	0	0	3007	667	23	1		1	CD1D	1	158151204	Intron	DNP	CG	TCGA-05-4396-01A-21D-1855-08	4128	158151204	91099417	1752	9903											
CD1D	912	broad.mit.edu	37	chr1	158151248	158151248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcattctctcccagtccCgcaaaggcttttccccctcc	4	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158151248	A	A	158151248	3	1	9	1	0	0	0	0	1	0	0	0	3007	652	23	1	71	1	CD1D	1	158151248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	158151248	91099373	1753	9904											
CD1D	912	broad.mit.edu	37	chr1	158153728	158153728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgttcctccagagcaggtGggagctacacctccatgggc	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158153728	T	T	158153728	3	4	9	1	0	0	0	0	1	0	0	0	3007	1348	47	2	907	2	CD1D	1	158153728	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2480	158153728	91096893	1754	9905											
CD1A	909	broad.mit.edu	37	chr1	158227331	158227331	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcatgtgtctttcctactCttagcctctaccccactttt	4	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158227331	A	A	158227331	1	1	9	0	1	0	0	0	0	0	0	0	3004	928	32	3		3	CD1A	1	158227331	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	73603	158227331	91023290	1755	9906											
CD1C	911	broad.mit.edu	37	chr1	158262115	158262115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgcccccgatttctcttGggtctcctggatgcagggaa	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158262115	T	T	158262115	3	4	9	1	0	0	0	0	1	0	0	0	3006	1339	47	2	580	2	CD1C	1	158262115	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34784	158262115	90988506	1756	9907											
CD1B	910	broad.mit.edu	37	chr1	158299207	158299207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaactgctgtgcttcaccCgacaggacaggccagccgcc	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158299207	A	A	158299207	3	1	9	1	0	0	0	0	1	0	0	0	3005	652	23	1	174	1	CD1B	1	158299207	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37092	158299207	90951414	1757	9908											
CD1B	910	broad.mit.edu	37	chr1	158300624	158300624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggcaaagtcttgtacttctCgagcgaatccaaagatgtag	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158300624	A	A	158300624	3	1	9	1	0	0	0	0	1	0	0	0	3005	884	31	3	731	3	CD1B	1	158300624	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1417	158300624	90949997	1758	9909											
CD1B	910	broad.mit.edu	37	chr1	158300792	158300792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccttgagtttgtgccCaggtactattggtaaaggac	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158300792	A	A	158300792	3	1	9	1	0	0	0	0	1	0	0	0	3005	595	21	2	899	2	CD1B	1	158300792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168	158300792	90949829	1759	9910											
CD1E	913	broad.mit.edu	37	chr1	158324090	158324090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaactgtctctcatctctGggttccttttttccctttgg	6	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158324090	T	T	158324090	1	4	9	0	1	0	0	0	0	0	0	0	3008	1363	47	2		2	CD1E	1	158324090	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23298	158324090	90926531	1760	9911											
CD1E	913	broad.mit.edu	37	chr1	158325135	158325135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgtagaatgaatgcccCacaaatcttcttaaatatgg	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325135	A	A	158325135	3	1	9	1	0	0	0	0	1	0	0	0	3008	594	21	2	411	2	CD1E	1	158325135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1045	158325135	90925486	1761	9912											
OR10R2	343406	broad.mit.edu	37	chr1	158449757	158449757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacctcaccatggtcacCgaattcctgttgctgggttt	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158449757	A	A	158449757	2	1	9	1	0	0	0	0	0	0	0	1	11011	639	23	1		1	OR10R2	1	158449757	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	124622	158449757	90800864	1762	9913											
OR10R2	343406	broad.mit.edu	37	chr1	158450072	158450072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaccaactgcctgctattGggtgtgatgggttatgatcg	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450072	T	T	158450072	3	4	9	1	0	0	0	0	1	0	0	0	11011	1339	47	2	407	2	OR10R2	1	158450072	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	315	158450072	90800549	1763	9914											
OR10Z1	128368	broad.mit.edu	37	chr1	158576463	158576463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacactttgggcatcatcCctagaatgctctctggcctg	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158576463	A	A	158576463	3	1	9	1	0	0	0	0	1	0	0	0	11017	623	22	2	237	2	OR10Z1	1	158576463	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126391	158576463	90674158	1764	9915											
SPTA1	6708	broad.mit.edu	37	chr1	158585135	158585135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtcttccaagttgtccCccaggtccacaatcttggtt	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158585135	A	A	158585135	3	1	9	1	0	0	0	0	1	0	0	0	15234	623	22	2	620	2	SPTA1	1	158585135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8672	158585135	90665486	1765	9916											
SPTA1	6708	broad.mit.edu	37	chr1	158592860	158592860	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagcgcttcagcagagcGgcataacgctcttcaatggc	10	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158592860	T	T	158592860	2	4	9	1	0	0	0	0	0	0	0	1	15234	1103	39	1		1	SPTA1	1	158592860	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7725	158592860	90657761	1766	9917											
SPTA1	6708	broad.mit.edu	37	chr1	158592974	158592974	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactctgcagactggcatcCagagtgtcctgagaaagatc	10	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158592974	A	A	158592974	2	1	9	1	0	0	0	0	0	0	0	1	15234	581	21	2		2	SPTA1	1	158592974	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	158592974	90657647	1767	9918											
SPTA1	6708	broad.mit.edu	37	chr1	158593006	158593006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaagatcaggagagaggcCgtgaacaagaaaatggtgca	14	5	1	5	rs142587663	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158593006	A	A	158593006	1	1	9	0	1	0	0	0	0	0	0	0	15234	667	23	1		1	SPTA1	1	158593006	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	158593006	90657615	1768	9919											
SPTA1	6708	broad.mit.edu	37	chr1	158604335	158604335	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcttcctgttcctcacctGagtagcagctaatgtatctc	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158604335	T	T	158604335	3	4	9	1	0	0	0	0	1	0	0	0	15234	1299	45	3	1752	3	SPTA1	1	158604335	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11329	158604335	90646286	1769	9920											
SPTA1	6708	broad.mit.edu	37	chr1	158639501	158639501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggcccttggacatacccCgtcacggatagccttgatgt	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158639501	A	A	158639501	3	1	9	1	0	0	0	0	1	0	0	0	15234	652	23	1	5744	1	SPTA1	1	158639501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35166	158639501	90611120	1770	9921											
SPTA1	6708	broad.mit.edu	37	chr1	158644196	158644196	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcagcagattgaaatcGgtcatcgtaagagtcaatct	8	9	5	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158644196	T	T	158644196	2	4	9	1	0	0	0	0	0	0	0	1	15234	1124	39	1		1	SPTA1	1	158644196	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4695	158644196	90606425	1771	9922											
SPTA1	6708	broad.mit.edu	37	chr1	158646106	158646106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgggatgaaaaagaaacCtagtaggaaatccaagtact	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158646106	A	A	158646106	1	1	9	0	1	0	0	0	0	0	0	0	15234	696	24	2		2	SPTA1	1	158646106	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1910	158646106	90604515	1772	9923											
OR6K3	391114	broad.mit.edu	37	chr1	158687491	158687491	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagttgagcacagagccGgggggtcatgatcatttgat	15	6	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158687491	T	T	158687491	2	4	9	1	0	0	0	0	0	0	0	1	11297	1115	39	1		1	OR6K3	1	158687491	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41385	158687491	90563130	1773	9924											
OR6N1	128372	broad.mit.edu	37	chr1	158735918	158735918	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtatcagtgcaagccaaactCagcacaggagggaagtcaca	11	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158735918	A	A	158735918	2	1	9	1	0	0	0	0	0	0	0	1	11300	813	29	3		3	OR6N1	1	158735918	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48427	158735918	90514703	1774	9925											
PYHIN1	149628	broad.mit.edu	37	chr1	158908132	158908132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagtattgaaactgcttcGggtgtccccgatcatctgct	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158908132	T	T	158908132	1	4	9	0	1	0	0	0	0	0	0	0	12973	1131	39	1		1	PYHIN1	1	158908132	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	172214	158908132	90342489	1775	9926											
DARC	2532	broad.mit.edu	37	chr1	159176166	159176166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattctgccaccaggccaccCgcaccctcttgccctctctg	6	20	3	0	rs150917132		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159176166	A	A	159176166	3	1	9	1	0	0	0	0	1	0	0	0	4273	652	23	1	970	1	DARC	1	159176166	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	268034	159176166	90074455	1776	9927											
OR10J3	441911	broad.mit.edu	37	chr1	159284385	159284385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagacaagtttgtgctgcCgcctgaagctggagaaacct	12	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159284385	A	A	159284385	3	1	9	1	0	0	0	0	1	0	0	0	11005	652	23	1	926	1	OR10J3	1	159284385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108219	159284385	89966236	1777	9928											
CRP	1401	broad.mit.edu	37	chr1	159683373	159683373	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacttcatacttcagtgccCgccagttcaggacattagga	9	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159683373	G	G	159683373	3	3	9	1	0	0	0	0	1	0	0	0	3927	652	23	4	61	4	CRP	1	159683373	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	398988	159683373	89567248	1778	9929											
CRP	1401	broad.mit.edu	37	chr1	159683599	159683599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcaccctgggcttccCatctacccagaactccacga	5	19	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159683599	A	A	159683599	3	1	9	1	0	0	0	0	1	0	0	0	3927	594	21	2	287	2	CRP	1	159683599	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	226	159683599	89567022	1779	9930											
CRP	1401	broad.mit.edu	37	chr1	159683637	159683637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatccctgaggcggactccCagcttgtacaaatgtgtact	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159683637	A	A	159683637	3	1	9	1	0	0	0	0	1	0	0	0	3927	595	21	2	325	2	CRP	1	159683637	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	159683637	89566984	1780	9931											
FCRL6	343413	broad.mit.edu	37	chr1	159776464	159776464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatgggccaaaacttactGgatgggaacaggacagtgcc	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159776464	T	T	159776464	1	4	9	0	1	0	0	0	0	0	0	0	5856	1363	47	2		2	FCRL6	1	159776464	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	92827	159776464	89474157	1781	9932											
SLAMF8	56833	broad.mit.edu	37	chr1	159799751	159799751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccccctggcttccaagtcCgtgaggctatctggcgatct	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159799751	A	A	159799751	3	1	9	1	0	0	0	0	1	0	0	0	14483	652	23	1	142	1	SLAMF8	1	159799751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23287	159799751	89450870	1782	9933											
CCDC19	25790	broad.mit.edu	37	chr1	159854287	159854287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctccttctcctgctccCgctgctcagcaagcagcgat	8	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159854287	A	A	159854287	3	1	9	1	0	0	0	0	1	0	0	0	2822	652	23	1	843	1	CCDC19	1	159854287	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54536	159854287	89396334	1783	9934											
CCDC19	25790	broad.mit.edu	37	chr1	159856448	159856448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccaggatttgggcatccCggatggcatggcacttagca	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159856448	A	A	159856448	3	1	9	1	0	0	0	0	1	0	0	0	2822	652	23	1	1063	1	CCDC19	1	159856448	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2161	159856448	89394173	1784	9935											
IGSF9	57549	broad.mit.edu	37	chr1	159901276	159901276	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcgtggaggtggccactcGggccacagcattgctggcac	15	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159901276	T	T	159901276	2	4	9	1	0	0	0	0	0	0	0	1	7675	1124	39	1		1	IGSF9	1	159901276	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44828	159901276	89349345	1785	9936											
PIGM	93183	broad.mit.edu	37	chr1	160000712	160000712	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatacagcatgtagaagtacGgagaaaagttgtgacggata	12	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160000712	C	C	160000712	3	2	9	1	0	0	0	0	1	0	0	0	11987	1116	39	4	457	4	PIGM	1	160000712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99436	160000712	89249909	1786	9937											
PIGM	93183	broad.mit.edu	37	chr1	160000856	160000856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaacagcagcacagccCgattacacagccttttcagg	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160000856	A	A	160000856	3	1	9	1	0	0	0	0	1	0	0	0	11987	652	23	1	601	1	PIGM	1	160000856	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144	160000856	89249765	1787	9938											
ATP1A2	477	broad.mit.edu	37	chr1	160093197	160093197	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatggaggatgaaccatcCaacgacaatgtgagcccaca	10	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160093197	A	A	160093197	2	1	9	1	0	0	0	0	0	0	0	1	1133	581	21	2		2	ATP1A2	1	160093197	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92341	160093197	89157424	1788	9939											
ATP1A2	477	broad.mit.edu	37	chr1	160097476	160097476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcatccagctgatcacaGgggtcgctgtattcctgggg	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160097476	T	T	160097476	3	4	9	1	0	0	0	0	1	0	0	0	1133	1000	35	2	913	2	ATP1A2	1	160097476	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4279	160097476	89153145	1789	9940											
ATP1A2	477	broad.mit.edu	37	chr1	160099148	160099148	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgagagacagaaacccCaaggtggcagagattccttt	10	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160099148	A	A	160099148	2	1	9	1	0	0	0	0	0	0	0	1	1133	581	21	2		2	ATP1A2	1	160099148	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1672	160099148	89151473	1790	9941											
ATP1A2	477	broad.mit.edu	37	chr1	160099178	160099178	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagattcctttcaactctacCaacaagtaccaggtctgctt	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160099178	A	A	160099178	2	1	9	1	0	0	0	0	0	0	0	1	1133	581	21	2		2	ATP1A2	1	160099178	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	160099178	89151443	1791	9942											
ATP1A2	477	broad.mit.edu	37	chr1	160109744	160109744	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatctatgatgaggtcCgaaagctcatcctgcggcgg	11	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160109744	A	A	160109744	2	1	9	1	0	0	0	0	0	0	0	1	1133	644	23	1		1	ATP1A2	1	160109744	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10566	160109744	89140877	1792	9943											
ATP1A4	480	broad.mit.edu	37	chr1	160141497	160141497	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccatgattgaccctcccCgagctgcagtgcctgatgct	9	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160141497	A	A	160141497	2	1	9	1	0	0	0	0	0	0	0	1	1135	644	23	1		1	ATP1A4	1	160141497	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31753	160141497	89109124	1793	9944											
ATP1A4	480	broad.mit.edu	37	chr1	160143473	160143473	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcagaggaagtcgctgccCggcttaagatccctatcagc	12	13	1	2	rs144511687	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160143473	A	A	160143473	2	1	9	1	0	0	0	0	0	0	0	1	1135	643	23	1		1	ATP1A4	1	160143473	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1976	160143473	89107148	1794	9945											
ATP1A4	480	broad.mit.edu	37	chr1	160156152	160156152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctcatccgtcagcaccCggatggtgaggctcccctgg	11	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160156152	A	A	160156152	3	1	9	1	0	0	0	0	1	0	0	0	1135	652	23	1	3138	1	ATP1A4	1	160156152	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12679	160156152	89094469	1795	9946											
PEA15	8682	broad.mit.edu	37	chr1	160182980	160182980	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtggttgactacagaaccCgtgtgctgaagatctctgag	13	8	1	5	rs11552719		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160182980	G	G	160182980	3	3	9	1	0	0	0	0	1	0	0	0	11805	652	23	4	259	4	PEA15	1	160182980	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26828	160182980	89067641	1796	9947											
PEA15	8682	broad.mit.edu	37	chr1	160183028	160183028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggacaccaagctaaccCgtatccccagtgccaagaag	9	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160183028	A	A	160183028	3	1	9	1	0	0	0	0	1	0	0	0	11805	652	23	1	307	1	PEA15	1	160183028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	160183028	89067593	1797	9948											
DCAF8	50717	broad.mit.edu	37	chr1	160188211	160188211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctatcttcatcccgctccCgcttgttcttcttaatcacc	4	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160188211	A	A	160188211	3	1	9	1	0	0	0	0	1	0	0	0	4309	652	23	1	221	1	DCAF8	1	160188211	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5183	160188211	89062410	1798	9949											
DCAF8	50717	broad.mit.edu	37	chr1	160201110	160201110	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaaactgatctcgtccaccCactgcaaactggtgggtatt	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160201110	G	G	160201110	2	3	9	1	0	0	0	0	0	0	0	1	4309	581	21	4		4	DCAF8	1	160201110	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12899	160201110	89049511	1799	9950											
DCAF8	50717	broad.mit.edu	37	chr1	160213827	160213827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttgctgtagccagcctGggtttgggagaggaagaaac	15	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160213827	T	T	160213827	1	4	9	0	1	0	0	0	0	0	0	0	4309	1363	47	2		2	DCAF8	1	160213827	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12717	160213827	89036794	1800	9951											
DCAF8	50717	broad.mit.edu	37	chr1	160236445	160236445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctcccatgggtgttcacGggaaatggtgccacgcatgc	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160236445	T	T	160236445	1	4	9	0	1	0	0	0	0	0	0	0	4309	1131	39	1		1	DCAF8	1	160236445	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22618	160236445	89014176	1801	9952											
DCAF8	50717	broad.mit.edu	37	chr1	160250011	160250011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggaggtagagattccCgatgactctgcaaccattct	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160250011	A	A	160250011	3	1	9	1	0	0	0	0	1	0	0	0	4309	652	23	1		1	DCAF8	1	160250011	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13566	160250011	89000610	1802	9953											
DCAF8	50717	broad.mit.edu	37	chr1	160250054	160250054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactaagaaaagagagaatGggtggaaaagaattaagtga	12	1	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160250054	T	T	160250054	1	4	9	0	1	0	0	0	0	0	0	0	4309	1363	47	2		2	DCAF8	1	160250054	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43	160250054	89000567	1803	9954											
COPA	1314	broad.mit.edu	37	chr1	160259928	160259928	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacatatggtgactgaccCatgcacacaaagggggcctt	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160259928	A	A	160259928	1	1	9	0	1	0	0	0	0	0	0	0	3759	609	21	2		2	COPA	1	160259928	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	9874	160259928	88990693	1804	9955											
COPA	1314	broad.mit.edu	37	chr1	160261681	160261681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtctccacggacaaaccCacaatgtactcacggcaaat	6	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160261681	A	A	160261681	2	1	9	1	0	0	0	0	0	0	0	1	3759	581	21	2		2	COPA	1	160261681	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1753	160261681	88988940	1805	9956											
COPA	1314	broad.mit.edu	37	chr1	160261966	160261966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcccacagctggtacacCattcttcagccctgcatcct	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160261966	A	A	160261966	3	1	9	1	0	0	0	0	1	0	0	0	3759	594	21	2	711	2	COPA	1	160261966	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	285	160261966	88988655	1806	9957											
COPA	1314	broad.mit.edu	37	chr1	160261978	160261978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtacaccattcttcagccCtgcatccttcctggaaaggg	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160261978	A	A	160261978	3	1	9	1	0	0	0	0	1	0	0	0	3759	681	24	2	723	2	COPA	1	160261978	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	160261978	88988643	1807	9958											
COPA	1314	broad.mit.edu	37	chr1	160275258	160275258	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgatgtggttgcttgtGgtatagataaataccccact	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160275258	T	T	160275258	2	4	9	1	0	0	0	0	0	0	0	1	3759	1335	47	2		2	COPA	1	160275258	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13280	160275258	88975363	1808	9959											
COPA	1314	broad.mit.edu	37	chr1	160276981	160276981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgatctaggacagcaaacCgatttcgagcgacccaaacg	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160276981	A	A	160276981	3	1	9	1	0	0	0	0	1	0	0	0	3759	652	23	1	2507	1	COPA	1	160276981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1723	160276981	88973640	1809	9960											
COPA	1314	broad.mit.edu	37	chr1	160276996	160276996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaccgatttcgagcgaccCaaacggctgtcaggcctgag	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160276996	A	A	160276996	3	1	9	1	0	0	0	0	1	0	0	0	3759	595	21	2	2522	2	COPA	1	160276996	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	160276996	88973625	1810	9961											
COPA	1314	broad.mit.edu	37	chr1	160287172	160287172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgtgcggagacccccGggtgaagccactgtcatcat	13	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160287172	T	T	160287172	1	4	9	0	1	0	0	0	0	0	0	0	3759	1131	39	1		1	COPA	1	160287172	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10176	160287172	88963449	1811	9962											
COPA	1314	broad.mit.edu	37	chr1	160287531	160287531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcttttccctcaatcCtttctcatttttaaaaatag	1	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160287531	A	A	160287531	1	1	9	0	1	0	0	0	0	0	0	0	3759	696	24	2		2	COPA	1	160287531	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	359	160287531	88963090	1812	9963											
NCSTN	23385	broad.mit.edu	37	chr1	160321522	160321522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtctgattacaatgtgtGgagcatgctaaagcctataa	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160321522	T	T	160321522	3	4	9	1	0	0	0	0	1	0	0	0	10336	1357	47	2	796	2	NCSTN	1	160321522	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33991	160321522	88929099	1813	9964											
NCSTN	23385	broad.mit.edu	37	chr1	160321593	160321593	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttgtggttgctgccaccCgggtgagtgttggcttctga	17	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160321593	A	A	160321593	2	1	9	1	0	0	0	0	0	0	0	1	10336	643	23	1		1	NCSTN	1	160321593	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71	160321593	88929028	1814	9965											
NCSTN	23385	broad.mit.edu	37	chr1	160322739	160322739	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagaagggcaagtttccCgtgcagttagagaatgttga	14	5	0	3	rs34884866	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160322739	A	A	160322739	2	1	9	1	0	0	0	0	0	0	0	1	10336	639	23	1		1	NCSTN	1	160322739	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1146	160322739	88927882	1815	9966											
NCSTN	23385	broad.mit.edu	37	chr1	160326429	160326429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatcgctgtctccagccCcaccaacaccacttatgttg	5	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160326429	A	A	160326429	3	1	9	1	0	0	0	0	1	0	0	0	10336	623	22	2	1737	2	NCSTN	1	160326429	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3690	160326429	88924192	1816	9967											
NCSTN	23385	broad.mit.edu	37	chr1	160327865	160327865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccatggctccaaacccCaaacagttatccaaaaaact	3	14	0	0	rs41266887	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160327865	A	A	160327865	1	1	9	0	1	0	0	0	0	0	0	0	10336	609	21	2		2	NCSTN	1	160327865	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1436	160327865	88922756	1817	9968											
NCSTN	23385	broad.mit.edu	37	chr1	160327956	160327956	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgatcaccctgacagtGggcttcggcatcctcatctt	9	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160327956	T	T	160327956	2	4	9	1	0	0	0	0	0	0	0	1	10336	1335	47	2		2	NCSTN	1	160327956	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	160327956	88922665	1818	9969											
SLAMF6	114836	broad.mit.edu	37	chr1	160466139	160466139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgactcccccagaatccCgttcaccatcaatggggtta	7	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160466139	A	A	160466139	3	1	9	1	0	0	0	0	1	0	0	0	14481	652	23	1	932	1	SLAMF6	1	160466139	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138183	160466139	88784482	1819	9970											
CD84	8832	broad.mit.edu	37	chr1	160520783	160520783	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgctggctgggtgttccttGaagccatgatatatgtgtat	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160520783	T	T	160520783	4	4	9	1	0	0	0	0	0	1	0	0	3072	1294	45	3	195	3	CD84	1	160520783	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54644	160520783	88729838	1820	9971											
CD84	8832	broad.mit.edu	37	chr1	160535331	160535331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggacctaaggcatgtatcCgttcataataatttctgtgg	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160535331	A	A	160535331	3	1	9	1	0	0	0	0	1	0	0	0	3072	652	23	1	814	1	CD84	1	160535331	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14548	160535331	88715290	1821	9972											
CD48	962	broad.mit.edu	37	chr1	160654646	160654646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctggggccactggagtGgggatttgctctttggctcc	14	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160654646	T	T	160654646	1	4	9	0	1	0	0	0	0	0	0	0	3050	1363	47	2		2	CD48	1	160654646	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	119315	160654646	88595975	1822	9973											
SLAMF7	57823	broad.mit.edu	37	chr1	160720035	160720035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggtgctccaagacctGggtcgttttcctgagctgac	13	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160720035	T	T	160720035	1	4	9	0	1	0	0	0	0	0	0	0	14482	1363	47	2		2	SLAMF7	1	160720035	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65389	160720035	88530586	1823	9974											
SLAMF7	57823	broad.mit.edu	37	chr1	160721171	160721171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagagtggacatttgtcGggaaactcctaacatatgcc	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160721171	T	T	160721171	3	4	9	1	0	0	0	0	1	0	0	0	14482	1116	39	1	824	1	SLAMF7	1	160721171	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1136	160721171	88529450	1824	9975											
LY9	4063	broad.mit.edu	37	chr1	160783652	160783652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgcacagcccagaacccCgtcagccagagaagctccct	8	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160783652	A	A	160783652	2	1	9	1	0	0	0	0	0	0	0	1	9189	639	23	1		1	LY9	1	160783652	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62481	160783652	88466969	1825	9976											
LY9	4063	broad.mit.edu	37	chr1	160783686	160783686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccctccctgtccatgttGggcagttctgtacaggtaac	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160783686	T	T	160783686	3	4	9	1	0	0	0	0	1	0	0	0	9189	1348	47	2	857	2	LY9	1	160783686	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	160783686	88466935	1826	9977											
CD244	51744	broad.mit.edu	37	chr1	160808229	160808229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagagaccccagcctccGggatgacatacgtgatttct	11	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160808229	T	T	160808229	1	4	9	0	1	0	0	0	0	0	0	0	3017	1131	39	1		1	CD244	1	160808229	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24543	160808229	88442392	1827	9978											
ITLN2	142683	broad.mit.edu	37	chr1	160919968	160919968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtatttctgcagagaccCagaagaaaggttttgtgagg	14	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160919968	A	A	160919968	1	1	9	0	1	0	0	0	0	0	0	0	7981	609	21	2		2	ITLN2	1	160919968	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	111739	160919968	88330653	1828	9979											
F11R	50848	broad.mit.edu	37	chr1	160969215	160969215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctgaaagagaagaaatGggatcatgagtgtcagcagg	14	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160969215	T	T	160969215	1	4	9	0	1	0	0	0	0	0	0	0	5381	1363	47	2		2	F11R	1	160969215	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49247	160969215	88281406	1829	9980											
F11R	50848	broad.mit.edu	37	chr1	160970019	160970019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcgtaggcatcactatccCatctttgaaccaggtgtatt	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160970019	A	A	160970019	3	1	9	1	0	0	0	0	1	0	0	0	5381	594	21	2	415	2	F11R	1	160970019	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	804	160970019	88280602	1830	9981											
USF1	7391	broad.mit.edu	37	chr1	161010636	161010636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccctgcgtttctcatccCgagtcgtccggggagcttct	12	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161010636	A	A	161010636	3	1	9	1	0	0	0	0	1	0	0	0	17158	652	23	1	361	1	USF1	1	161010636	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40617	161010636	88239985	1831	9982											
ARHGAP30	257106	broad.mit.edu	37	chr1	161018143	161018143	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggctgaggtggctgtgGggctacctcttccatctcag	13	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161018143	T	T	161018143	3	4	9	1	0	0	0	0	1	0	0	0	881	1232	43	2	641	2	ARHGAP30	1	161018143	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7507	161018143	88232478	1832	9983											
ARHGAP30	257106	broad.mit.edu	37	chr1	161018682	161018682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggcctctgtctcttccCtactcccttctctcaatctg	4	18	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161018682	A	A	161018682	3	1	9	1	0	0	0	0	1	0	0	0	881	681	24	2	1180	2	ARHGAP30	1	161018682	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	539	161018682	88231939	1833	9984											
ARHGAP30	257106	broad.mit.edu	37	chr1	161023119	161023119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgacgatggattgtaccCgcacctccatgaaggccgct	10	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161023119	A	A	161023119	3	1	9	1	0	0	0	0	1	0	0	0	881	652	23	1	2740	1	ARHGAP30	1	161023119	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4437	161023119	88227502	1834	9985											
DEDD	9191	broad.mit.edu	37	chr1	161092295	161092295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctggcagtattcagccCgaacccgcagtctgatgtct	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161092295	A	A	161092295	3	1	9	1	0	0	0	0	1	0	0	0	4417	652	23	1	361	1	DEDD	1	161092295	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69176	161092295	88158326	1835	9986											
UFC1	51506	broad.mit.edu	37	chr1	161123828	161123828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgttgtgtctgagatccCggtgctgaagactaacgccg	13	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161123828	A	A	161123828	3	1	9	1	0	0	0	0	1	0	0	0	17060	652	23	1	43	1	UFC1	1	161123828	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31533	161123828	88126793	1836	9987											
UFC1	51506	broad.mit.edu	37	chr1	161123854	161123854	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagactaacgccggacccCgagatcgtgagttgtgggtg	15	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161123854	A	A	161123854	2	1	9	1	0	0	0	0	0	0	0	1	17060	644	23	1		1	UFC1	1	161123854	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	161123854	88126767	1837	9988											
UFC1	51506	broad.mit.edu	37	chr1	161123870	161123870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccgagatcgtgagttgtGggtgcagcgactgaaggagg	17	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161123870	T	T	161123870	3	4	9	1	0	0	0	0	1	0	0	0	17060	1357	47	2	85	2	UFC1	1	161123870	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16	161123870	88126751	1838	9989											
ADAMTS4	9507	broad.mit.edu	37	chr1	161163913	161163913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatggcgtgagtcgggccCgaaggtcagctggcactggc	16	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161163913	A	A	161163913	3	1	9	1	0	0	0	0	1	0	0	0	268	652	23	1	1173	1	ADAMTS4	1	161163913	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40043	161163913	88086708	1839	9990											
NDUFS2	4720	broad.mit.edu	37	chr1	161180139	161180139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcggacaattgacattGgggttgtaacagcagaagaa	12	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161180139	T	T	161180139	3	4	9	1	0	0	0	0	1	0	0	0	10387	1348	47	2	856	2	NDUFS2	1	161180139	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16226	161180139	88070482	1840	9991											
FCER1G	2207	broad.mit.edu	37	chr1	161187808	161187808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctcagctctgctatatcCtggatgccatcctgtttctg	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161187808	A	A	161187808	3	1	9	1	0	0	0	0	1	0	0	0	5832	680	24	2	88	2	FCER1G	1	161187808	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7669	161187808	88062813	1841	9992											
C1orf192	257177	broad.mit.edu	37	chr1	161335482	161335482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcccatgaaggaacccCaaggatttgcctaaaaatga	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161335482	A	A	161335482	3	1	9	1	0	0	0	0	1	0	0	0	2044	595	21	2	359	2	C1orf192	1	161335482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147674	161335482	87915139	1842	9993											
FCGR2A	2212	broad.mit.edu	37	chr1	161483714	161483714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcctgtgaaggctgccCaatttgaggtgagtaatccc	11	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161483714	A	A	161483714	3	1	9	1	0	0	0	0	1	0	0	0	5838	595	21	2	794	2	FCGR2A	1	161483714	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148232	161483714	87766907	1843	9994											
FCGR2C	9103	broad.mit.edu	37	chr1	161565372	161565372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcctgtgaaggctgccCaatttgagatgagtaatccc	10	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161565372	A	A	161565372	3	1	9	1	0	0	0	0	1	0	0	0	5840	595	21	2	812	2	FCGR2C	1	161565372	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81658	161565372	87685249	1844	9995											
FCRLB	127943	broad.mit.edu	37	chr1	161693220	161693220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatcttcaaaggggagcGggtaactttgaagtgtgatg	13	7	2	2	rs141950344		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161693220	T	T	161693220	3	4	9	1	0	0	0	0	1	0	0	0	5858	1116	39	1	126	1	FCRLB	1	161693220	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127848	161693220	87557401	1845	9996											
ATF6	22926	broad.mit.edu	37	chr1	161761278	161761278	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaatagtctctcttcagcGgagccactgaaggaagataa	9	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161761278	T	T	161761278	2	4	9	1	0	0	0	0	0	0	0	1	1088	1103	39	1		1	ATF6	1	161761278	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68058	161761278	87489343	1846	9997											
ATF6	22926	broad.mit.edu	37	chr1	161833061	161833061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacttttttgaagccatcCgcagaaggggagacacattt	10	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161833061	A	A	161833061	3	1	9	1	0	0	0	0	1	0	0	0	1088	652	23	1	1732	1	ATF6	1	161833061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71783	161833061	87417560	1847	9998											
ATF6	22926	broad.mit.edu	37	chr1	161928344	161928344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagttcctccttacctccGagatcagcagaggaatcaaa	8	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161928344	T	T	161928344	3	4	9	1	0	0	0	0	1	0	0	0	1088	1058	37	3	1975	3	ATF6	1	161928344	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95283	161928344	87322277	1848	9999											
OLFML2B	25903	broad.mit.edu	37	chr1	161953675	161953675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatccacggcatacagcacCccacagatgacgaagcagtt	8	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161953675	A	A	161953675	2	1	9	1	0	0	0	0	0	0	0	1	10953	610	22	2		2	OLFML2B	1	161953675	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25331	161953675	87296946	1849	10000											
OLFML2B	25903	broad.mit.edu	37	chr1	161968050	161968050	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggtggctgcaggcctccGggtgacactggtcatcaggc	16	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161968050	T	T	161968050	2	4	9	1	0	0	0	0	0	0	0	1	10953	1115	39	1		1	OLFML2B	1	161968050	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14375	161968050	87282571	1850	10001											
NOS1AP	9722	broad.mit.edu	37	chr1	162313595	162313595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccttgcgcatcctcaccCatcctgttcttctcctttct	4	19	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162313595	A	A	162313595	1	1	9	0	1	0	0	0	0	0	0	0	10637	609	21	2		2	NOS1AP	1	162313595	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	345545	162313595	86937026	1851	10002											
C1orf111	284680	broad.mit.edu	37	chr1	162344190	162344190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgagggcaagtgttctctGgggaggaagaggacgaacag	17	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162344190	T	T	162344190	3	4	9	1	0	0	0	0	1	0	0	0	2004	1348	47	2	355	2	C1orf111	1	162344190	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30595	162344190	86906431	1852	10003											
UAP1	6675	broad.mit.edu	37	chr1	162551001	162551001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttttagggatcttaaccCtagtttggaaacaatctttg	8	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162551001	A	A	162551001	1	1	9	0	1	0	0	0	0	0	0	0	16951	696	24	2		2	UAP1	1	162551001	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	206811	162551001	86699620	1853	10004											
UAP1	6675	broad.mit.edu	37	chr1	162557284	162557284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtagagaaaacgaaccCtacagaaccagttggagtgg	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162557284	A	A	162557284	3	1	9	1	0	0	0	0	1	0	0	0	16951	681	24	2	872	2	UAP1	1	162557284	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6283	162557284	86693337	1854	10005											
UAP1	6675	broad.mit.edu	37	chr1	162557298	162557298	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaccctacagaaccagttGgagtggtttgccgagtggat	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162557298	T	T	162557298	4	4	9	1	0	0	0	0	0	1	0	0	16951	1349	47	2	886	2	UAP1	1	162557298	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	162557298	86693323	1855	10006											
UAP1	6675	broad.mit.edu	37	chr1	162557437	162557437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccatttcttcactgtacCatttctgagagatgttgtca	6	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162557437	A	A	162557437	3	1	9	1	0	0	0	0	1	0	0	0	16951	594	21	2	1025	2	UAP1	1	162557437	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	139	162557437	86693184	1856	10007											
DDR2	4921	broad.mit.edu	37	chr1	162688777	162688777	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggcagtatctgcctcactCatttcctctccttctctttc	4	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162688777	A	A	162688777	1	1	9	0	1	0	0	0	0	0	0	0	4370	841	29	3		3	DDR2	1	162688777	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	131340	162688777	86561844	1857	10008											
DDR2	4921	broad.mit.edu	37	chr1	162745477	162745477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagataaagatcatgtctcGgctcaaggacccaaacatca	9	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162745477	T	T	162745477	3	4	9	1	0	0	0	0	1	0	0	0	4370	1116	39	1	1942	1	DDR2	1	162745477	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56700	162745477	86505144	1858	10009											
C1orf110	339512	broad.mit.edu	37	chr1	162824746	162824746	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaggttggctttgtgaactCgccttcgaagcttcctgcac	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162824746	A	A	162824746	4	1	9	1	0	0	0	0	0	1	0	0	2003	893	31	3	194	3	C1orf110	1	162824746	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79269	162824746	86425875	1859	10010											
C1orf110	339512	broad.mit.edu	37	chr1	162825066	162825066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctttttgctcttcatgGggtctttgaggccagcatca	11	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162825066	T	T	162825066	3	4	9	1	0	0	0	0	1	0	0	0	2003	1232	43	2	514	2	C1orf110	1	162825066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	320	162825066	86425555	1860	10011											
C1orf110	339512	broad.mit.edu	37	chr1	162825136	162825136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtgtcttgggccatacGggttgccaatgctctgagaa	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162825136	T	T	162825136	3	4	9	1	0	0	0	0	1	0	0	0	2003	1116	39	1	584	1	C1orf110	1	162825136	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	162825136	86425485	1861	10012											
RGS4	5999	broad.mit.edu	37	chr1	163044228	163044228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggagaaggattcctacCgccgcttcctcaagtctcga	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163044228	A	A	163044228	3	1	9	1	0	0	0	0	1	0	0	0	13416	652	23	1	809	1	RGS4	1	163044228	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	219092	163044228	86206393	1862	10013											
RGS5	8490	broad.mit.edu	37	chr1	163122259	163122259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagcctttggctcccaacGggaggtctgtgtctcagatg	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163122259	T	T	163122259	1	4	9	0	1	0	0	0	0	0	0	0	13417	1131	39	1		1	RGS5	1	163122259	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78031	163122259	86128362	1863	10014											
RGS5	8490	broad.mit.edu	37	chr1	163122321	163122321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgcccttaactgaccCacctacccagagaccaacct	6	17	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163122321	A	A	163122321	1	1	9	0	1	0	0	0	0	0	0	0	13417	609	21	2		2	RGS5	1	163122321	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	163122321	86128300	1864	10015											
RGS5	8490	broad.mit.edu	37	chr1	163138087	163138087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctggcttctcattgtacGgaatgacaaggtcaccaact	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163138087	T	T	163138087	3	4	9	1	0	0	0	0	1	0	0	0	13417	1116	39	1	445	1	RGS5	1	163138087	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15766	163138087	86112534	1865	10016											
RGS5	8490	broad.mit.edu	37	chr1	163138134	163138134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttctggaggagaattccCaacttgatcttaatctcctt	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163138134	A	A	163138134	3	1	9	1	0	0	0	0	1	0	0	0	13417	593	21	2	492	2	RGS5	1	163138134	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	163138134	86112487	1866	10017											
PBX1	5087	broad.mit.edu	37	chr1	164532421	164532421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaccctgtgcattatcGgcagtttgatcttgagagtc	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164532421	T	T	164532421	1	4	9	0	1	0	0	0	0	0	0	0	11586	1131	39	1		1	PBX1	1	164532421	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1394287	164532421	84718200	1867	10018											
PBX1	5087	broad.mit.edu	37	chr1	164769006	164769006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggaccaggcccatctcccCaaaggagattgagcggatgg	13	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164769006	A	A	164769006	3	1	9	1	0	0	0	0	1	0	0	0	11586	594	21	2	595	2	PBX1	1	164769006	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	236585	164769006	84481615	1868	10019											
PBX1	5087	broad.mit.edu	37	chr1	164776781	164776781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttctctttacaaaggcGgaagagacggaatttcaaca	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164776781	T	T	164776781	3	4	9	1	0	0	0	0	1	0	0	0	11586	1116	39	1	722	1	PBX1	1	164776781	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7775	164776781	84473840	1869	10020											
MGST3	4259	broad.mit.edu	37	chr1	165619154	165619154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctttataatggtggccCacctagccatcaatgtttcc	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165619154	A	A	165619154	3	1	9	1	0	0	0	0	1	0	0	0	9655	594	21	2	72	2	MGST3	1	165619154	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	842373	165619154	83631467	1870	10021											
MGST3	4259	broad.mit.edu	37	chr1	165620271	165620271	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcctatcatgtacagcacGgaccctgaaaatgggcacat	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165620271	T	T	165620271	2	4	9	1	0	0	0	0	0	0	0	1	9655	1103	39	1		1	MGST3	1	165620271	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1117	165620271	83630350	1871	10022											
MGST3	4259	broad.mit.edu	37	chr1	165621271	165621271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggaggtgtttaccaccCggtaagttttccaggaggtg	14	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165621271	A	A	165621271	3	1	9	1	0	0	0	0	1	0	0	0	9655	666	23	1	258	1	MGST3	1	165621271	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1000	165621271	83629350	1872	10023											
ALDH9A1	223	broad.mit.edu	37	chr1	165638560	165638560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggtcggttgatgagtGgacccatccttgtatcttcc	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165638560	T	T	165638560	3	4	9	1	0	0	0	0	1	0	0	0	506	1348	47	2	518	2	ALDH9A1	1	165638560	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17289	165638560	83612061	1873	10024											
TMCO1	54499	broad.mit.edu	37	chr1	165697331	165697331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtggcggctcgtgaagGggcaaggccgagaatcttct	16	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165697331	T	T	165697331	3	4	9	1	0	0	0	0	1	0	0	0	16118	1232	43	2	74	2	TMCO1	1	165697331	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58771	165697331	83553290	1874	10025											
UCK2	7371	broad.mit.edu	37	chr1	165865554	165865554	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatacagatgcggacaccCggctctcacgcagaggtgcg	14	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165865554	A	A	165865554	2	1	9	1	0	0	0	0	0	0	0	1	17050	643	23	1		1	UCK2	1	165865554	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	168223	165865554	83385067	1875	10026											
POGK	57645	broad.mit.edu	37	chr1	166819054	166819054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgggaggaagttaccacCgtacatcattttgaggggaa	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166819054	A	A	166819054	3	1	9	1	0	0	0	0	1	0	0	0	12280	652	23	1	1252	1	POGK	1	166819054	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	953500	166819054	82431567	1876	10027											
MAEL	84944	broad.mit.edu	37	chr1	166960718	166960718	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaaaggtgatcaaggtaGagtaatcctgaaatattttg	9	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166960718	T	T	166960718	1	4	9	0	1	0	0	0	0	0	0	0	9242	957	33	3		3	MAEL	1	166960718	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	141664	166960718	82289903	1877	10028											
POU2F1	5451	broad.mit.edu	37	chr1	167341174	167341175	+	Missense_Mutation	DNP	GG	TT	TT													tctaaatctaatgaagaatcGggggattcgcagcagccaag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	167341175	TT	TT	167341174	3	4	9	1	0	0	0	0	1	0	0	0	12367	1103	39	1	248	1	POU2F1	1	167341174	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	380456	167341174	81909447	1878	10029											
CD247	919	broad.mit.edu	37	chr1	167408510	167408510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaacccaagactctggcGggcgcgttccctaggtccga	11	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167408510	T	T	167408510	1	4	9	0	1	0	0	0	0	0	0	0	3018	1131	39	1		1	CD247	1	167408510	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	67336	167408510	81842111	1879	10030											
MPZL1	9019	broad.mit.edu	37	chr1	167742507	167742507	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccagtttgggtagtggtGggcatagttactgctgtggt	15	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167742507	T	T	167742507	2	4	9	1	0	0	0	0	0	0	0	1	9843	1335	47	2		2	MPZL1	1	167742507	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	333997	167742507	81508114	1880	10031											
ADCY10	55811	broad.mit.edu	37	chr1	167828961	167828961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaagcctcttgccaatgtGgtctgaactcctcaaaccac	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167828961	T	T	167828961	1	4	9	0	1	0	0	0	0	0	0	0	293	1363	47	2		2	ADCY10	1	167828961	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	86454	167828961	81421660	1881	10032											
ADCY10	55811	broad.mit.edu	37	chr1	167865930	167865930	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggttttaagaagttaacCtaaataaaagcaaatgagaa	9	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167865930	A	A	167865930	5	1	9	1	0	0	0	0	0	0	1	0	293	695	24	2	4298	2	ADCY10	1	167865930	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	36969	167865930	81384691	1882	10033											
DCAF6	55827	broad.mit.edu	37	chr1	167935926	167935926	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctggctcagatgacacCaaattagtaattagtaatcc	6	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167935926	A	A	167935926	2	1	9	1	0	0	0	0	0	0	0	1	4307	581	21	2		2	DCAF6	1	167935926	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	69996	167935926	81314695	1883	10034											
SFT2D2	375035	broad.mit.edu	37	chr1	168204394	168204394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcgaatgtttgagcctactCgtttgattgcaactatcatg	9	8	1	2	rs140922912	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168204394	A	A	168204394	3	1	9	1	0	0	0	0	1	0	0	0	14299	884	31	3	306	3	SFT2D2	1	168204394	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	268468	168204394	81046227	1884	10035											
TBX19	9095	broad.mit.edu	37	chr1	168260482	168260482	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggactttgtccctacGgacagtcaccgctggaagta	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168260482	T	T	168260482	2	4	9	1	0	0	0	0	0	0	0	1	15776	1103	39	1		1	TBX19	1	168260482	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56088	168260482	80990139	1885	10036											
TBX19	9095	broad.mit.edu	37	chr1	168262339	168262339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttatcacctgcgatacacGgggctttgcttttctcctct	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168262339	T	T	168262339	1	4	9	0	1	0	0	0	0	0	0	0	15776	1131	39	1		1	TBX19	1	168262339	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1857	168262339	80988282	1886	10037											
ATP1B1	481	broad.mit.edu	37	chr1	169094244	169094244	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtacaaagattcagccCagagggatgacatgattttt	9	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169094244	A	A	169094244	1	1	9	0	1	0	0	0	0	0	0	0	1136	595	21	2		2	ATP1B1	1	169094244	RNA	SNP	C	TCGA-05-4396-01A-21D-1855-08	831905	169094244	80156377	1887	10038											
ATP1B1	481	broad.mit.edu	37	chr1	169100749	169100749	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtacagtgagaaagacCgttttcagggacgttttgat	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169100749	A	A	169100749	1	1	9	0	1	0	0	0	0	0	0	0	1136	652	23	1		1	ATP1B1	1	169100749	RNA	SNP	C	TCGA-05-4396-01A-21D-1855-08	6505	169100749	80149872	1888	10039											
NME7	29922	broad.mit.edu	37	chr1	169138782	169138782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttccagggcgtaaatgcCgggcaatttcctattaaaca	10	9	0	0	rs150610040	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169138782	A	A	169138782	3	1	9	1	0	0	0	0	1	0	0	0	10591	652	23	1	137	1	NME7	1	169138782	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38033	169138782	80111839	1889	10040											
NME7	29922	broad.mit.edu	37	chr1	169256557	169256557	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccttcactgacagcatgGggtttaacaatgcaacaggt	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169256557	T	T	169256557	2	4	9	1	0	0	0	0	0	0	0	1	10591	1219	43	2		2	NME7	1	169256557	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	117775	169256557	79994064	1890	10041											
NME7	29922	broad.mit.edu	37	chr1	169256641	169256641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaggaaaaaacaactcCatttcctaaagacagagaga	7	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169256641	A	A	169256641	3	1	9	1	0	0	0	0	1	0	0	0	10591	594	21	2	500	2	NME7	1	169256641	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	169256641	79993980	1891	10042											
NME7	29922	broad.mit.edu	37	chr1	169267819	169267819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagaagcaaaagaatcaGggccatgcgctgcatttctt	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169267819	T	T	169267819	3	4	9	1	0	0	0	0	1	0	0	0	10591	1000	35	2	535	2	NME7	1	169267819	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11178	169267819	79982802	1892	10043											
C1orf114	57821	broad.mit.edu	37	chr1	169391285	169391285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcttgtacaattttctcCataatatatctccttacttc	2	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169391285	A	A	169391285	3	1	9	1	0	0	0	0	1	0	0	0	2007	594	21	2	1158	2	C1orf114	1	169391285	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123466	169391285	79859336	1893	10044											
SLC19A2	10560	broad.mit.edu	37	chr1	169446343	169446343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctgtttttttcaccacGggtccagcccccatagtagc	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169446343	T	T	169446343	1	4	9	0	1	0	0	0	0	0	0	0	14542	1131	39	1		1	SLC19A2	1	169446343	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	55058	169446343	79804278	1894	10045											
F5	2153	broad.mit.edu	37	chr1	169510829	169510829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttgacttatatctgtggGgaaggacttgtgacttcggt	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169510829	T	T	169510829	3	4	9	1	0	0	0	0	1	0	0	0	5391	1232	43	2	3227	2	F5	1	169510829	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64486	169510829	79739792	1895	10046											
F5	2153	broad.mit.edu	37	chr1	169512208	169512208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaacgatcatgcattttcCgtgtagccatgactgtagat	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169512208	A	A	169512208	3	1	9	1	0	0	0	0	1	0	0	0	5391	652	23	1	4606	1	F5	1	169512208	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1379	169512208	79738413	1896	10047											
F5	2153	broad.mit.edu	37	chr1	169524504	169524504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccacctcttcatgtgcCgcctctgctcacgagttatt	6	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169524504	A	A	169524504	3	1	9	1	0	0	0	0	1	0	0	0	5391	652	23	1	5716	1	F5	1	169524504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12296	169524504	79726117	1897	10048											
SELP	6403	broad.mit.edu	37	chr1	169563945	169563945	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaccttggcaggttggcaCggtagttgaccagtggccat	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169563945	T	T	169563945	3	4	9	1	0	0	0	0	1	0	0	0	14132	536	19	4	236	4	SELP	1	169563945	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39441	169563945	79686676	1898	10049											
SELP	6403	broad.mit.edu	37	chr1	169572367	169572367	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagatgaattgacatgtGgatttataactggaacttcc	8	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169572367	T	T	169572367	2	4	9	1	0	0	0	0	0	0	0	1	14132	1335	47	2		2	SELP	1	169572367	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8422	169572367	79678254	1899	10050											
SELP	6403	broad.mit.edu	37	chr1	169586322	169586322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcatcattccacttgccaGgggctgacggactcttgatg	11	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169586322	T	T	169586322	3	4	9	1	0	0	0	0	1	0	0	0	14132	1000	35	2	2123	2	SELP	1	169586322	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13955	169586322	79664299	1900	10051											
SELP	6403	broad.mit.edu	37	chr1	169586367	169586367	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccacgcagtcctcgttgTtccttttgttgttaggttca	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169586367	C	C	169586367	3	2	9	1	0	0	0	0	1	0	0	0	14132	1725	60	5	2168	5	SELP	1	169586367	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	45	169586367	79664254	1901	10052											
SELE	6401	broad.mit.edu	37	chr1	169697209	169697209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagactgtaccttcacatgtGggcttctcgttgtcccactc	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169697209	T	T	169697209	2	4	9	1	0	0	0	0	0	0	0	1	14126	1335	47	2		2	SELE	1	169697209	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	110842	169697209	79553412	1902	10053											
SCYL3	57147	broad.mit.edu	37	chr1	169822817	169822817	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattttttttaaaaaaagGgaatcctttttcctaaagtt	5	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169822817	T	T	169822817	1	4	9	0	1	0	0	0	0	0	0	0	14062	1247	43	2		2	SCYL3	1	169822817	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	125608	169822817	79427804	1903	10054											
SCYL3	57147	broad.mit.edu	37	chr1	169823719	169823719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtacaaggctaatcttttGgggtaagcttgatttccaag	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169823719	T	T	169823719	3	4	9	1	0	0	0	0	1	0	0	0	14062	1357	47	2	375	2	SCYL3	1	169823719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	902	169823719	79426902	1904	10055											
SCYL3	57147	broad.mit.edu	37	chr1	169828217	169828217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtatttttagtaaaacttGgggcagtgcgtttgaagatc	11	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169828217	T	T	169828217	3	4	9	1	0	0	0	0	1	0	0	0	14062	1348	47	2	967	2	SCYL3	1	169828217	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4498	169828217	79422404	1905	10056											
SCYL3	57147	broad.mit.edu	37	chr1	169847901	169847901	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaagatgaatgccatcCgcttccacagtacaagataa	8	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169847901	A	A	169847901	2	1	9	1	0	0	0	0	0	0	0	1	14062	639	23	1		1	SCYL3	1	169847901	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19684	169847901	79402720	1906	10057											
KIFAP3	22920	broad.mit.edu	37	chr1	169993638	169993638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcagctcaaaattgtccCgatcaagggctttcaccaac	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169993638	A	A	169993638	3	1	9	1	0	0	0	0	1	0	0	0	8381	652	23	1	1485	1	KIFAP3	1	169993638	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145737	169993638	79256983	1907	10058											
KIFAP3	22920	broad.mit.edu	37	chr1	170007496	170007496	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggatcaaagcagaacccCgaactttgtcaggaatatct	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170007496	A	A	170007496	3	1	9	1	0	0	0	0	1	0	0	0	8381	652	23	1	1990	1	KIFAP3	1	170007496	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13858	170007496	79243125	1908	10059											
KIFAP3	22920	broad.mit.edu	37	chr1	170015877	170015877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgacaatgaatcacggcGgttctgtagatagtacaaca	9	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170015877	T	T	170015877	3	4	9	1	0	0	0	0	1	0	0	0	8381	1116	39	1	2155	1	KIFAP3	1	170015877	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8381	170015877	79234744	1909	10060											
GORAB	92344	broad.mit.edu	37	chr1	170501497	170501497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggatgcagctttggcgGggaaagggggcgtggaagcg	23	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170501497	T	T	170501497	1	4	9	0	1	0	0	0	0	0	0	0	6638	1247	43	2		2	GORAB	1	170501497	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	485620	170501497	78749124	1910	10061											
GORAB	92344	broad.mit.edu	37	chr1	170511673	170511673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctccaacaagaacaacGgctaatggaagagaaaaata	8	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170511673	T	T	170511673	3	4	9	1	0	0	0	0	1	0	0	0	6638	1116	39	1	546	1	GORAB	1	170511673	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10176	170511673	78738948	1911	10062											
PRRX1	5396	broad.mit.edu	37	chr1	170688996	170688996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctatcctgatgcttttgtgcGagaagaccttgcccgccggg	12	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170688996	T	T	170688996	3	4	9	1	0	0	0	0	1	0	0	0	12718	1058	37	3	377	3	PRRX1	1	170688996	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	177323	170688996	78561625	1912	10063											
PRRX1	5396	broad.mit.edu	37	chr1	170705119	170705119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgagagtacatccatctGgggcacagacttgcagcttt	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170705119	T	T	170705119	1	4	9	0	1	0	0	0	0	0	0	0	12718	1363	47	2		2	PRRX1	1	170705119	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16123	170705119	78545502	1913	10064											
PRRX1	5396	broad.mit.edu	37	chr1	170705165	170705165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaatgcctgttattctccCtgctctctcctttgtcccta	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170705165	A	A	170705165	1	1	9	0	1	0	0	0	0	0	0	0	12718	696	24	2		2	PRRX1	1	170705165	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46	170705165	78545456	1914	10065											
PRRX1	5396	broad.mit.edu	37	chr1	170705230	170705230	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacatgtgccaacaatagccCtgcacagggcatcaacatgg	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170705230	G	G	170705230	3	3	9	1	0	0	0	0	1	0	0	0	12718	681	24	4	714	4	PRRX1	1	170705230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	170705230	78545391	1915	10066											
C1orf129	80133	broad.mit.edu	37	chr1	170940959	170940959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgttcccatgaagatcCctcgattgtaaaacaagcat	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170940959	A	A	170940959	3	1	9	1	0	0	0	0	1	0	0	0	2016	623	22	2	577	2	C1orf129	1	170940959	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	235729	170940959	78309662	1916	10067											
FMO3	2328	broad.mit.edu	37	chr1	171086231	171086231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtggtgttttctctccCatctccaggtttggcaaaag	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171086231	A	A	171086231	1	1	9	0	1	0	0	0	0	0	0	0	6014	609	21	2		2	FMO3	1	171086231	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145272	171086231	78164390	1917	10068											
FMO2	2327	broad.mit.edu	37	chr1	171178105	171178105	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattagtatcgcctggttGggcctgggcaatgggaagga	15	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171178105	T	T	171178105	1	4	9	0	1	0	0	0	0	0	0	0	6013	1363	47	2		2	FMO2	1	171178105	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	91874	171178105	78072516	1918	10069											
FMO1	2326	broad.mit.edu	37	chr1	171227149	171227149	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcttccaaattctttttcCtggcttgttagagcagccaa	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171227149	A	A	171227149	1	1	9	0	1	0	0	0	0	0	0	0	6012	696	24	2		2	FMO1	1	171227149	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49044	171227149	78023472	1919	10070											
MYOC	4653	broad.mit.edu	37	chr1	171607791	171607791	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctctccttcaaaattcGggaagcaggaacttcagtta	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171607791	T	T	171607791	2	4	9	1	0	0	0	0	0	0	0	1	10180	1124	39	1		1	MYOC	1	171607791	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	380642	171607791	77642830	1920	10071											
MYOC	4653	broad.mit.edu	37	chr1	171621187	171621187	+	Silent	SNP	G	T	T													cacagcccgagcagtgtctcGggtctggggacactggcccc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171621187	T	T	171621187	2	4	9	1	0	0	0	0	0	0	0	1	10180	1124	39	1		1	MYOC	1	171621187	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13396	171621187	77629434	1921	10072	60	2									
MYOC	4653	broad.mit.edu	37	chr1	171621193	171621193	+	Missense_Mutation	SNP	G	T	T													ccgagcagtgtctcgggtctGgggacactggccccttctca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171621193	T	T	171621193	3	4	9	1	0	0	0	0	1	0	0	0	10180	1357	47	2	967	2	MYOC	1	171621193	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	171621193	77629428	1922	10073	60	2									
MYOC	4653	broad.mit.edu	37	chr1	171621481	171621481	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctccagggagctgagtcGagctttggtggcctccaggt	15	11	1	1	rs143413116		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171621481	T	T	171621481	2	4	9	1	0	0	0	0	0	0	0	1	10180	1066	37	3		3	MYOC	1	171621481	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	288	171621481	77629140	1923	10074											
METTL13	51603	broad.mit.edu	37	chr1	171761192	171761192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggtggtaggcctgggcGggggcagcctccccctcttt	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171761192	T	T	171761192	3	4	9	1	0	0	0	0	1	0	0	0	9590	1116	39	1	1532	1	METTL13	1	171761192	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139711	171761192	77489429	1924	10075											
METTL13	51603	broad.mit.edu	37	chr1	171765804	171765804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagctcctagaaacagccCaggctttggagcggaccctg	12	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171765804	A	A	171765804	3	1	9	1	0	0	0	0	1	0	0	0	9590	595	21	2	2038	2	METTL13	1	171765804	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4612	171765804	77484817	1925	10076											
DNM3	26052	broad.mit.edu	37	chr1	172011215	172011216	+	Missense_Mutation	DNP	CC	AA	AA													tcaggggatcaagtagatacCctggaactctcaggtggtgc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	172011216	AA	AA	172011215	3	1	9	1	0	0	0	0	1	0	0	0	4713	610	22	2	1089	2	DNM3	1	172011215	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	245411	172011215	77239406	1926	10077											
DNM3	26052	broad.mit.edu	37	chr1	172017884	172017884	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactgtgaagaagtgtacCaaaaaagtaagttcgaatta	8	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172017884	A	A	172017884	2	1	9	1	0	0	0	0	0	0	0	1	4713	581	21	2		2	DNM3	1	172017884	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6669	172017884	77232737	1927	10078											
PIGC	5279	broad.mit.edu	37	chr1	172411767	172411767	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttgagcatacattatcCtttcattcaaactcaggcca	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172411767	A	A	172411767	1	1	9	1	0	0	0	0	0	0	0	0	11981	696	24	2		2	PIGC	1	172411767	Translation_Start_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	393883	172411767	76838854	1928	10079											
C1orf105	92346	broad.mit.edu	37	chr1	172437642	172437642	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacagctgtcttccacGgattactgacagaggcctac	10	13	1	2	rs146020107	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172437642	T	T	172437642	4	4	9	1	0	0	0	0	0	1	0	0	1999	1117	39	1	486	1	C1orf105	1	172437642	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25875	172437642	76812979	1929	10080											
C1orf105	92346	broad.mit.edu	37	chr1	172437669	172437669	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacagaggcctacaaaactCtaaaagagagacaacgttct	8	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172437669	A	A	172437669	3	1	9	1	0	0	0	0	1	0	0	0	1999	912	32	3	513	3	C1orf105	1	172437669	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	172437669	76812952	1930	10081											
C1orf9	51430	broad.mit.edu	37	chr1	172538212	172538212	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacatcagtagcaagtccCaaagatccagaagatatacc	6	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172538212	A	A	172538212	2	1	9	1	0	0	0	0	0	0	0	1	2089	581	21	2		2	C1orf9	1	172538212	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	100543	172538212	76712409	1931	10082											
C1orf9	51430	broad.mit.edu	37	chr1	172554948	172554948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagtaaaatattttcatGgtacagcttttaaaattgaa	5	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172554948	T	T	172554948	1	4	9	0	1	0	0	0	0	0	0	0	2089	1363	47	2		2	C1orf9	1	172554948	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16736	172554948	76695673	1932	10083											
FASLG	356	broad.mit.edu	37	chr1	172629313	172629313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcatgtacattgagttccCaaagatgatcctcagcacag	8	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172629313	A	A	172629313	1	1	9	0	1	0	0	0	0	0	0	0	5739	609	21	2		2	FASLG	1	172629313	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	74365	172629313	76621308	1933	10084											
PRDX6	9588	broad.mit.edu	37	chr1	173456935	173456935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagccaaaaaacttttccCgaaaggagtcttcaccaaag	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173456935	A	A	173456935	3	1	9	1	0	0	0	0	1	0	0	0	12575	652	23	1	626	1	PRDX6	1	173456935	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	827622	173456935	75793686	1934	10085											
SLC9A11	284525	broad.mit.edu	37	chr1	173486700	173486700	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactagtttcacagatgacGgtatattcaatttcacgctt	6	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173486700	T	T	173486700	2	4	9	1	0	0	0	0	0	0	0	1	14825	1103	39	1		1	SLC9A11	1	173486700	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29765	173486700	75763921	1935	10086											
SLC9A11	284525	broad.mit.edu	37	chr1	173502787	173502787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaattattcttaaatatccCattattactgtaagctgtat	3	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173502787	A	A	173502787	3	1	9	1	0	0	0	0	1	0	0	0	14825	594	21	2	1298	2	SLC9A11	1	173502787	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16087	173502787	75747834	1936	10087											
SLC9A11	284525	broad.mit.edu	37	chr1	173526509	173526509	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttccacttttcgttcagcGagattataaacatcaggagc	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173526509	T	T	173526509	2	4	9	1	0	0	0	0	0	0	0	1	14825	1045	37	3		3	SLC9A11	1	173526509	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23722	173526509	75724112	1937	10088											
ANKRD45	339416	broad.mit.edu	37	chr1	173616056	173616056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcgagccctttcttccCggaagttcaaagcttctata	6	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173616056	A	A	173616056	3	1	9	1	0	0	0	0	1	0	0	0	673	652	23	1	391	1	ANKRD45	1	173616056	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89547	173616056	75634565	1938	10089											
KLHL20	27252	broad.mit.edu	37	chr1	173726326	173726326	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtcaatctgtaattttctCtctactattcatatagtttt	4	7	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173726326	A	A	173726326	1	1	9	0	1	0	0	0	0	0	0	0	8446	928	32	3		3	KLHL20	1	173726326	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	110270	173726326	75524295	1939	10090											
KLHL20	27252	broad.mit.edu	37	chr1	173743556	173743556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctgtaggtggctctgacGggacatctcctctcaacaca	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173743556	T	T	173743556	3	4	9	1	0	0	0	0	1	0	0	0	8446	1116	39	1	1438	1	KLHL20	1	173743556	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17230	173743556	75507065	1940	10091											
DARS2	55157	broad.mit.edu	37	chr1	173822936	173822936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgaatcttctaggccCgtagccaacactatgacttg	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173822936	A	A	173822936	3	1	9	1	0	0	0	0	1	0	0	0	4275	652	23	1	1625	1	DARS2	1	173822936	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79380	173822936	75427685	1941	10092											
DARS2	55157	broad.mit.edu	37	chr1	173823084	173823084	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggcttatttttttacCagaatatttttcagttttgt	6	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173823084	G	G	173823084	1	3	9	0	1	0	0	0	0	0	0	0	4275	609	21	4		4	DARS2	1	173823084	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	148	173823084	75427537	1942	10093											
ZBTB37	84614	broad.mit.edu	37	chr1	173839494	173839494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcaaggacaagcttttcGggctcacaaagtggtgctgg	14	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173839494	T	T	173839494	3	4	9	1	0	0	0	0	1	0	0	0	17664	1116	39	1	133	1	ZBTB37	1	173839494	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16410	173839494	75411127	1943	10094											
ZBTB37	84614	broad.mit.edu	37	chr1	173840009	173840009	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccattcttcggatcaacCgagcaggacagtggtatgtg	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173840009	A	A	173840009	2	1	9	1	0	0	0	0	0	0	0	1	17664	644	23	1		1	ZBTB37	1	173840009	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	515	173840009	75410612	1944	10095											
SERPINC1	462	broad.mit.edu	37	chr1	173879992	173879992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcggtcttattggacaccCatttgttgatggccgctctg	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173879992	A	A	173879992	3	1	9	1	0	0	0	0	1	0	0	0	14222	595	21	2	748	2	SERPINC1	1	173879992	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39983	173879992	75370629	1945	10096											
SERPINC1	462	broad.mit.edu	37	chr1	173883925	173883926	+	Missense_Mutation	DNP	CG	AT	AT													tcctcagttgccttcttctcCggggagcggtaaatgcacat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	173883926	AT	AT	173883925	3	1	9	1	0	0	0	0	1	0	0	0	14222	639	23	1	1244	1	SERPINC1	1	173883925	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	3933	173883925	75366696	1946	10097											
SERPINC1	462	broad.mit.edu	37	chr1	173883965	173883965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggattcatgggaatgtccCgcggcttggctgtgcagatg	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173883965	A	A	173883965	3	1	9	1	0	0	0	0	1	0	0	0	14222	652	23	1	1284	1	SERPINC1	1	173883965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	173883965	75366656	1947	10098											
RC3H1	149041	broad.mit.edu	37	chr1	173930919	173930919	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccactggatagtaactctCgatctgttggtatctttctc	8	10	4	0	rs138013535		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173930919	A	A	173930919	4	1	9	1	0	0	0	0	0	1	0	0	13274	893	31	3	1291	3	RC3H1	1	173930919	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46954	173930919	75319702	1948	10099											
RC3H1	149041	broad.mit.edu	37	chr1	173931029	173931029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttctcttgtgtaagacGgagcagggtacactcgacgg	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173931029	T	T	173931029	3	4	9	1	0	0	0	0	1	0	0	0	13274	1116	39	1	1401	1	RC3H1	1	173931029	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110	173931029	75319592	1949	10100											
RC3H1	149041	broad.mit.edu	37	chr1	173931044	173931044	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacggagcagggtacactCgacggccatcatagtgagat	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173931044	A	A	173931044	3	1	9	1	0	0	0	0	1	0	0	0	13274	884	31	3	1416	3	RC3H1	1	173931044	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	173931044	75319577	1950	10101											
RC3H1	149041	broad.mit.edu	37	chr1	173939691	173939691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacagctggccccacgaGggcatcctcctctctgcttc	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173939691	T	T	173939691	3	4	9	1	0	0	0	0	1	0	0	0	13274	1000	35	2	2163	2	RC3H1	1	173939691	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8647	173939691	75310930	1951	10102											
RABGAP1L	9910	broad.mit.edu	37	chr1	174200409	174200409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaagtagaggctttacGggcaatggcaaccatgaaat	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174200409	T	T	174200409	3	4	9	1	0	0	0	0	1	0	0	0	13073	1116	39	1	468	1	RABGAP1L	1	174200409	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	260718	174200409	75050212	1952	10103											
RABGAP1L	9910	broad.mit.edu	37	chr1	174245095	174245095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttttcttaaaagatccCttattgtttgctttacattt	4	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174245095	A	A	174245095	1	1	9	0	1	0	0	0	0	0	0	0	13073	696	24	2		2	RABGAP1L	1	174245095	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44686	174245095	75005526	1953	10104											
GPR52	9293	broad.mit.edu	37	chr1	174417705	174417705	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctttcctacaatcaactGgtcaccccttgtcgcttgag	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174417705	T	T	174417705	2	4	9	1	0	0	0	0	0	0	0	1	6763	1335	47	2		2	GPR52	1	174417705	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	172610	174417705	74832916	1954	10105											
MRPS14	63931	broad.mit.edu	37	chr1	174983858	174983858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatggtcagctaagtgacGgaagactatacgactaagcc	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174983858	T	T	174983858	3	4	9	1	0	0	0	0	1	0	0	0	9918	1116	39	1	56	1	MRPS14	1	174983858	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	566153	174983858	74266763	1955	10106											
MRPS14	63931	broad.mit.edu	37	chr1	174983906	174983906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcttcacaccacgcggacGggacgtcataacacaccgat	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174983906	T	T	174983906	3	4	9	1	0	0	0	0	1	0	0	0	9918	1116	39	1	104	1	MRPS14	1	174983906	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48	174983906	74266715	1956	10107											
TNN	63923	broad.mit.edu	37	chr1	175046576	175046576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtctccaggagatgttcCgcttccctatggggctcctg	12	12	1	2	rs147514080	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175046576	A	A	175046576	3	1	9	1	0	0	0	0	1	0	0	0	16446	652	23	1	24	1	TNN	1	175046576	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62670	175046576	74204045	1957	10108											
TNN	63923	broad.mit.edu	37	chr1	175048794	175048794	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccacggcttctgtgacacGggcgagtgctactgcgagga	16	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175048794	C	C	175048794	2	2	9	1	0	0	0	0	0	0	0	1	16446	1103	39	4		4	TNN	1	175048794	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2218	175048794	74201827	1958	10109											
TNN	63923	broad.mit.edu	37	chr1	175067537	175067537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccacggtctcctgggaccCggtgcaggccgccattgaca	14	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175067537	A	A	175067537	3	1	9	1	0	0	0	0	1	0	0	0	16446	652	23	1	1955	1	TNN	1	175067537	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18743	175067537	74183084	1959	10110											
TNN	63923	broad.mit.edu	37	chr1	175092647	175092647	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtacatggtgcgctacacctCtgctgacggagagaccaggg	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175092647	T	T	175092647	3	4	9	1	0	0	0	0	1	0	0	0	16446	913	32	4	2804	4	TNN	1	175092647	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25110	175092647	74157974	1960	10111											
TNR	7143	broad.mit.edu	37	chr1	175293687	175293687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacattcattaggctgtccCatttgtcactgctttatcag	6	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175293687	A	A	175293687	1	1	9	0	1	0	0	0	0	0	0	0	16461	609	21	2		2	TNR	1	175293687	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	201040	175293687	73956934	1961	10112											
TNR	7143	broad.mit.edu	37	chr1	175304933	175304933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtttggccattctgccgcCtctggaatacctatgaagga	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175304933	A	A	175304933	3	1	9	1	0	0	0	0	1	0	0	0	16461	681	24	2	547	2	TNR	1	175304933	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11246	175304933	73945688	1962	10113											
TNR	7143	broad.mit.edu	37	chr1	175331944	175331944	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgagctgtctagtcgtccCactggagaagagaagaatct	11	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175331944	A	A	175331944	2	1	9	1	0	0	0	0	0	0	0	1	16461	608	21	2		2	TNR	1	175331944	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27011	175331944	73918677	1963	10114											
TNR	7143	broad.mit.edu	37	chr1	175362968	175362968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaatgagaagggctccCactgcacctccacggtggtc	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175362968	A	A	175362968	3	1	9	1	0	0	0	0	1	0	0	0	16461	595	21	2	2844	2	TNR	1	175362968	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31024	175362968	73887653	1964	10115											
RFWD2	64326	broad.mit.edu	37	chr1	176132951	176132951	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taataagagttgaaacatacGgtgctactcactgagtggtc	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176132951	T	T	176132951	2	4	9	1	0	0	0	0	0	0	0	1	13368	1130	39	1		1	RFWD2	1	176132951	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	769983	176132951	73117670	1965	10116											
PAPPA2	60676	broad.mit.edu	37	chr1	176640140	176640140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggagctgaaggaggccCtgcagctgaacagtactcac	13	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176640140	A	A	176640140	3	1	9	1	0	0	0	0	1	0	0	0	11527	680	24	2	2036	2	PAPPA2	1	176640140	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	507189	176640140	72610481	1966	10117											
PAPPA2	60676	broad.mit.edu	37	chr1	176661390	176661390	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattccacctatggtcatcGgacagaccaacaagtccctc	6	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176661390	T	T	176661390	4	4	9	1	0	0	0	0	0	1	0	0	11527	1117	39	1	2631	1	PAPPA2	1	176661390	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21250	176661390	72589231	1967	10118											
PAPPA2	60676	broad.mit.edu	37	chr1	176708830	176708830	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaactgatggcctagttccCggagagcatcagcagccgac	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176708830	A	A	176708830	2	1	9	1	0	0	0	0	0	0	0	1	11527	639	23	1		1	PAPPA2	1	176708830	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47440	176708830	72541791	1968	10119											
PAPPA2	60676	broad.mit.edu	37	chr1	176809303	176809303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttgccttctaacctccCtacagcccttccaagcagat	6	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176809303	A	A	176809303	1	1	9	0	1	0	0	0	0	0	0	0	11527	696	24	2		2	PAPPA2	1	176809303	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	100473	176809303	72441318	1969	10120											
PAPPA2	60676	broad.mit.edu	37	chr1	176809328	176809328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttccaagcagatggttGgtgtgacactatcaacaacc	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176809328	T	T	176809328	3	4	9	1	0	0	0	0	1	0	0	0	11527	1357	47	2	5357	2	PAPPA2	1	176809328	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	176809328	72441293	1970	10121											
ASTN1	460	broad.mit.edu	37	chr1	176838058	176838058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttatagtggtagaggaccCggtgtaaggtgggggaaccc	18	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176838058	A	A	176838058	3	1	9	1	0	0	0	0	1	0	0	0	1068	652	23	1	327	1	ASTN1	1	176838058	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28730	176838058	72412563	1971	10122											
ASTN1	460	broad.mit.edu	37	chr1	176853406	176853406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcaaagccatgaggcaGggcatttttctttgttttag	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176853406	T	T	176853406	1	4	9	0	1	0	0	0	0	0	0	0	1068	1015	35	2		2	ASTN1	1	176853406	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15348	176853406	72397215	1972	10123											
ASTN1	460	broad.mit.edu	37	chr1	176918392	176918392	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgctggaggcacagctgCtcacagccgccgttgaagcc	12	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176918392	T	T	176918392	2	4	9	1	0	0	0	0	0	0	0	1	1068	796	28	4		4	ASTN1	1	176918392	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64986	176918392	72332229	1973	10124											
ASTN1	460	broad.mit.edu	37	chr1	176983942	176983942	+	Missense_Mutation	SNP	C	A	A													cttacccctggtttgtccccCattcgttccgaatgcaaagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176983942	A	A	176983942	3	1	9	1	0	0	0	0	1	0	0	0	1068	595	21	2	2444	2	ASTN1	1	176983942	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65550	176983942	72266679	1974	10125	61	2									
ASTN1	460	broad.mit.edu	37	chr1	176983951	176983951	+	Missense_Mutation	SNP	C	A	A													ggtttgtcccccattcgttcCgaatgcaaaggtgcttatgt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176983951	A	A	176983951	3	1	9	1	0	0	0	0	1	0	0	0	1068	652	23	1	2453	1	ASTN1	1	176983951	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	176983951	72266670	1975	10126	61	2									
ASTN1	460	broad.mit.edu	37	chr1	177030282	177030282	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggggttcttcagtggggtCttgtccaggaaggcttgggg	18	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177030282	A	A	177030282	3	1	9	1	0	0	0	0	1	0	0	0	1068	913	32	3	3573	3	ASTN1	1	177030282	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46331	177030282	72220339	1976	10127											
FAM5B	57795	broad.mit.edu	37	chr1	177199204	177199204	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcacagaccggggcccCttccaccgcgctcaggagta	11	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177199204	T	T	177199204	2	4	9	1	0	0	0	0	0	0	0	1	5644	668	24	4		4	FAM5B	1	177199204	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	168922	177199204	72051417	1977	10128											
RASAL2	9462	broad.mit.edu	37	chr1	178425954	178425954	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacagcaactgagacgcttCactgaacataactccagtcc	6	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178425954	A	A	178425954	3	1	9	1	0	0	0	0	1	0	0	0	13172	825	29	3	2398	3	RASAL2	1	178425954	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1226750	178425954	70824667	1978	10129											
RASAL2	9462	broad.mit.edu	37	chr1	178427491	178427491	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagggtgggttaggtgccCgagccaaagccccaccatcc	12	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178427491	A	A	178427491	2	1	9	1	0	0	0	0	0	0	0	1	13172	644	23	1		1	RASAL2	1	178427491	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1537	178427491	70823130	1979	10130											
RALGPS2	55103	broad.mit.edu	37	chr1	178754717	178754717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataacattaatggatgttcCagtatttaaagctattcaac	6	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178754717	A	A	178754717	3	1	9	1	0	0	0	0	1	0	0	0	13126	594	21	2	198	2	RALGPS2	1	178754717	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	327226	178754717	70495904	1980	10131											
ANGPTL1	9068	broad.mit.edu	37	chr1	178820252	178820252	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgtgtcatttaaattggcGagtgtctctcttcagtcaat	8	8	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178820252	T	T	178820252	1	4	9	0	1	0	0	0	0	0	0	0	613	1073	37	3		3	ANGPTL1	1	178820252	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	65535	178820252	70430369	1981	10132											
FAM20B	9917	broad.mit.edu	37	chr1	179041053	179041053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactttttctcccagcattcGggtgtccacctggaacagac	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179041053	T	T	179041053	3	4	9	1	0	0	0	0	1	0	0	0	5585	1116	39	1	1030	1	FAM20B	1	179041053	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	220801	179041053	70209568	1982	10133											
TOR3A	64222	broad.mit.edu	37	chr1	179063322	179063322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatggaacacctggagcccCacctccaggcggagattgtg	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179063322	A	A	179063322	3	1	9	1	0	0	0	0	1	0	0	0	16500	594	21	2	931	2	TOR3A	1	179063322	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22269	179063322	70187299	1983	10134											
ABL2	27	broad.mit.edu	37	chr1	179079503	179079503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgtttcttcagtgtcCgagtcttggaaggaagtata	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179079503	A	A	179079503	3	1	9	1	0	0	0	0	1	0	0	0	93	652	23	1	1817	1	ABL2	1	179079503	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16181	179079503	70171118	1984	10135											
SOAT1	6646	broad.mit.edu	37	chr1	179271825	179271825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctagacaatacaatggtGggtgaagagaagatgtctct	11	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179271825	T	T	179271825	2	4	9	1	0	0	0	0	0	0	0	1	15024	1335	47	2		2	SOAT1	1	179271825	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	192322	179271825	69978796	1985	10136											
SOAT1	6646	broad.mit.edu	37	chr1	179310362	179310362	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcatgatcttccagattGgagttctaggttttggacca	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179310362	T	T	179310362	4	4	9	1	0	0	0	0	0	1	0	0	15024	1349	47	2	719	2	SOAT1	1	179310362	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38537	179310362	69940259	1986	10137											
SOAT1	6646	broad.mit.edu	37	chr1	179310422	179310422	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacactgccaccagcttccCggttcatcattatattcgag	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179310422	A	A	179310422	2	1	9	1	0	0	0	0	0	0	0	1	15024	643	23	1		1	SOAT1	1	179310422	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	179310422	69940199	1987	10138											
SOAT1	6646	broad.mit.edu	37	chr1	179320453	179320453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgccttcctatttttagtGgctttcaacttcattgtcaa	6	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179320453	T	T	179320453	3	4	9	1	0	0	0	0	1	0	0	0	15024	1362	47	2	1506	2	SOAT1	1	179320453	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10031	179320453	69930168	1988	10139											
SOAT1	6646	broad.mit.edu	37	chr1	179320535	179320535	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcttttcttgggcaatGgagtcttactctgcttttat	7	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179320535	T	T	179320535	4	4	9	1	0	0	0	0	0	1	0	0	15024	1349	47	2	1588	2	SOAT1	1	179320535	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82	179320535	69930086	1989	10140											
C1orf125	126859	broad.mit.edu	37	chr1	179452354	179452354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaacattgaacttcagcacCacgtatgtacttgtaagggt	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179452354	A	A	179452354	3	1	9	1	0	0	0	0	1	0	0	0	2013	594	21	2	2155	2	C1orf125	1	179452354	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131819	179452354	69798267	1990	10141											
NPHS2	7827	broad.mit.edu	37	chr1	179520401	179520401	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccctgagttctgttgctGggagaagacaggcaattcag	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179520401	T	T	179520401	2	4	9	1	0	0	0	0	0	0	0	1	10678	1335	47	2		2	NPHS2	1	179520401	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68047	179520401	69730220	1991	10142											
NPHS2	7827	broad.mit.edu	37	chr1	179530458	179530458	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaggaagcagatgtccCagtcggaatataattactct	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179530458	A	A	179530458	2	1	9	1	0	0	0	0	0	0	0	1	10678	581	21	2		2	NPHS2	1	179530458	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10057	179530458	69720163	1992	10143											
TDRD5	163589	broad.mit.edu	37	chr1	179561833	179561833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaagatggtttgagccCacaggagttggagaaggagt	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179561833	A	A	179561833	3	1	9	1	0	0	0	0	1	0	0	0	15855	594	21	2	85	2	TDRD5	1	179561833	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31375	179561833	69688788	1993	10144											
TDRD5	163589	broad.mit.edu	37	chr1	179609037	179609037	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaatgttttattcagccGggacatctctgttgtgtaag	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179609037	T	T	179609037	2	4	9	1	0	0	0	0	0	0	0	1	15855	1103	39	1		1	TDRD5	1	179609037	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47204	179609037	69641584	1994	10145											
TDRD5	163589	broad.mit.edu	37	chr1	179609135	179609135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagttgaagtgttctaccCagactttggaaatattggaa	11	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179609135	A	A	179609135	3	1	9	1	0	0	0	0	1	0	0	0	15855	594	21	2	1716	2	TDRD5	1	179609135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	179609135	69641486	1995	10146											
TDRD5	163589	broad.mit.edu	37	chr1	179620250	179620250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattttgtttaatttcacCacgtcaaggtataagataat	5	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179620250	A	A	179620250	1	1	9	0	1	0	0	0	0	0	0	0	15855	609	21	2		2	TDRD5	1	179620250	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11115	179620250	69630371	1996	10147											
TDRD5	163589	broad.mit.edu	37	chr1	179638422	179638422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcagagcagtcagcagacGggagccagtctgaacccaac	12	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179638422	T	T	179638422	3	4	9	1	0	0	0	0	1	0	0	0	15855	1116	39	1	2639	1	TDRD5	1	179638422	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18172	179638422	69612199	1997	10148											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179815714	179815714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggtctctcttccctccCgagctgctgtaaatatgatg	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179815714	A	A	179815714	3	1	9	1	0	0	0	0	1	0	0	0	16497	652	23	1	511	1	TOR1AIP2	1	179815714	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	177292	179815714	69434907	1998	10149											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179833865	179833865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttttccatcttccttgGgctacctacacaaaagcctc	4	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179833865	T	T	179833865	1	4	9	0	1	0	0	0	0	0	0	0	16497	1247	43	2		2	TOR1AIP2	1	179833865	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18151	179833865	69416756	1999	10150											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179834073	179834073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagctttctcaaaggtcCatctggtgagattctgggga	13	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179834073	A	A	179834073	1	1	9	0	1	0	0	0	0	0	0	0	16497	595	21	2		2	TOR1AIP2	1	179834073	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	208	179834073	69416548	2000	10151											
TOR1AIP1	26092	broad.mit.edu	37	chr1	179886868	179886868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttactgctcactgctgccCgagatgctgaagaagcactt	9	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179886868	A	A	179886868	2	1	9	1	0	0	0	0	0	0	0	1	16496	644	23	1		1	TOR1AIP1	1	179886868	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52795	179886868	69363753	2001	10152											
TOR1AIP1	26092	broad.mit.edu	37	chr1	179887447	179887447	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctaaccagagacagaattCagagctctttttgaaagaac	7	8	3	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179887447	A	A	179887447	1	1	9	0	1	0	0	0	0	0	0	0	16496	841	29	3		3	TOR1AIP1	1	179887447	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	579	179887447	69363174	2002	10153											
CEP350	9857	broad.mit.edu	37	chr1	179989190	179989190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggaagtttactctccCatctcttgagtttagagcat	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179989190	A	A	179989190	3	1	9	1	0	0	0	0	1	0	0	0	3284	594	21	2	2323	2	CEP350	1	179989190	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101743	179989190	69261431	2003	10154											
CEP350	9857	broad.mit.edu	37	chr1	179989469	179989469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggccagcattaactatGggtcagcatggaacactgag	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179989469	T	T	179989469	3	4	9	1	0	0	0	0	1	0	0	0	3284	1348	47	2	2602	2	CEP350	1	179989469	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	279	179989469	69261152	2004	10155											
CEP350	9857	broad.mit.edu	37	chr1	180003012	180003012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagtgtctcatcagataaGggaagatctcagaaaactcc	8	9	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180003012	T	T	180003012	3	4	9	1	0	0	0	0	1	0	0	0	3284	991	35	2	3799	2	CEP350	1	180003012	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13543	180003012	69247609	2005	10156											
CEP350	9857	broad.mit.edu	37	chr1	180062817	180062817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttttgctaaaggattttGggccggagtggagttagata	14	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180062817	T	T	180062817	3	4	9	1	0	0	0	0	1	0	0	0	3284	1357	47	2	7707	2	CEP350	1	180062817	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59805	180062817	69187804	2006	10157											
QSOX1	5768	broad.mit.edu	37	chr1	180158631	180158631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctaccatctgcaggacGgggaacttggggaattgctt	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180158631	T	T	180158631	1	4	9	0	1	0	0	0	0	0	0	0	12991	1131	39	1		1	QSOX1	1	180158631	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	95814	180158631	69091990	2007	10158											
QSOX1	5768	broad.mit.edu	37	chr1	180159629	180159629	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtgagccgcatttccGgggctttccctgctccctgt	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180159629	T	T	180159629	3	4	9	1	0	0	0	0	1	0	0	0	12991	1116	39	1	1240	1	QSOX1	1	180159629	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	998	180159629	69090992	2008	10159											
LHX4	89884	broad.mit.edu	37	chr1	180240544	180240544	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctggagctaagcggcccCggaccaccatcacagccaag	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180240544	A	A	180240544	2	1	9	1	0	0	0	0	0	0	0	1	8845	643	23	1		1	LHX4	1	180240544	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80915	180240544	69010077	2009	10160											
LHX4	89884	broad.mit.edu	37	chr1	180243555	180243555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacggtggacagtaatttGggcatcattgcgcatgcagg	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180243555	T	T	180243555	3	4	9	1	0	0	0	0	1	0	0	0	8845	1339	47	2	1036	2	LHX4	1	180243555	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3011	180243555	69007066	2010	10161											
LHX4	89884	broad.mit.edu	37	chr1	180243657	180243657	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcagtgtaggctatccCgactttccaactagcccagg	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180243657	A	A	180243657	2	1	9	1	0	0	0	0	0	0	0	1	8845	639	23	1		1	LHX4	1	180243657	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	180243657	69006964	2011	10162											
KIAA1614	57710	broad.mit.edu	37	chr1	180897583	180897583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaccgttggtcccaaccCggagcctgtgctgagcccca	12	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180897583	A	A	180897583	3	1	9	1	0	0	0	0	1	0	0	0	8318	652	23	1	1093	1	KIAA1614	1	180897583	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	653926	180897583	68353038	2012	10163											
CACNA1E	777	broad.mit.edu	37	chr1	181453051	181453051	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttgtacaaccccattccCgtccggcagaactgtttcac	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181453051	A	A	181453051	2	1	9	1	0	0	0	0	0	0	0	1	2568	639	23	1		1	CACNA1E	1	181453051	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	555468	181453051	67797570	2013	10164											
CACNA1E	777	broad.mit.edu	37	chr1	181453072	181453072	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccggcagaactgtttcacCgtcaacagatccctgttcat	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181453072	A	A	181453072	2	1	9	1	0	0	0	0	0	0	0	1	2568	639	23	1		1	CACNA1E	1	181453072	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	181453072	67797549	2014	10165											
CACNA1E	777	broad.mit.edu	37	chr1	181453097	181453097	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatccctgttcatcttcGgagaagataacattgtcagg	9	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181453097	T	T	181453097	4	4	9	1	0	0	0	0	0	1	0	0	2568	1117	39	1	219	1	CACNA1E	1	181453097	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	181453097	67797524	2015	10166											
CACNA1E	777	broad.mit.edu	37	chr1	181480501	181480501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcttctgctcctcatccCcacaggagaagacagaacct	9	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181480501	A	A	181480501	1	1	9	0	1	0	0	0	0	0	0	0	2568	638	22	2		2	CACNA1E	1	181480501	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	27404	181480501	67770120	2016	10167											
CACNA1E	777	broad.mit.edu	37	chr1	181548364	181548364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatgaacaattcaggtaGggtcgttcttttctgtcttc	8	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181548364	T	T	181548364	1	4	9	0	1	0	0	0	0	0	0	0	2568	1015	35	2		2	CACNA1E	1	181548364	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	67863	181548364	67702257	2017	10168											
CACNA1E	777	broad.mit.edu	37	chr1	181754813	181754813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaactccgtagtcattGgaattctttccttcttcttc	5	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181754813	T	T	181754813	1	4	9	0	1	0	0	0	0	0	0	0	2568	1363	47	2		2	CACNA1E	1	181754813	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	206449	181754813	67495808	2018	10169											
GLUL	2752	broad.mit.edu	37	chr1	182354801	182354801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacccgttcttaggttttGggttagtgagtggtgtatca	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182354801	T	T	182354801	1	4	9	0	1	0	0	0	0	0	0	0	6542	1363	47	2		2	GLUL	1	182354801	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	599988	182354801	66895820	2019	10170											
GLUL	2752	broad.mit.edu	37	chr1	182354881	182354881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcttcattgatggattGgagctatacttacctgggca	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182354881	T	T	182354881	1	4	9	0	1	0	0	0	0	0	0	0	6542	1363	47	2		2	GLUL	1	182354881	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	182354881	66895740	2020	10171											
GLUL	2752	broad.mit.edu	37	chr1	182354925	182354925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacctcggcattagtcccCgcaatcttgactccagcata	7	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182354925	A	A	182354925	2	1	9	1	0	0	0	0	0	0	0	1	6542	639	23	1		1	GLUL	1	182354925	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	182354925	66895696	2021	10172											
TEDDM1	127670	broad.mit.edu	37	chr1	182369470	182369470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcatgagcaccatccCgccatcaagacagagaacca	6	16	2	3	rs139831889		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182369470	A	A	182369470	3	1	9	1	0	0	0	0	1	0	0	0	15871	652	23	1	674	1	TEDDM1	1	182369470	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14545	182369470	66881151	2022	10173											
RGS8	85397	broad.mit.edu	37	chr1	182617316	182617316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactcctcaaagatcctatGggccttagagaccagttttg	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182617316	T	T	182617316	3	4	9	1	0	0	0	0	1	0	0	0	13421	1348	47	2	234	2	RGS8	1	182617316	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	247846	182617316	66633305	2023	10174											
RGS8	85397	broad.mit.edu	37	chr1	182617449	182617449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccccatctgcggatgtGggaggaagaaaagaagagag	15	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182617449	T	T	182617449	1	4	9	0	1	0	0	0	0	0	0	0	13421	1363	47	2		2	RGS8	1	182617449	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	133	182617449	66633172	2024	10175											
RGS8	85397	broad.mit.edu	37	chr1	182617473	182617473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaaaagaagagagataGgaagcagcttaagtttaaga	13	2	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182617473	T	T	182617473	1	4	9	0	1	0	0	0	0	0	0	0	13421	1015	35	2		2	RGS8	1	182617473	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	182617473	66633148	2025	10176											
RGS8	85397	broad.mit.edu	37	chr1	182635139	182635139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacatcaaaggaatctgccCacctcgtagcttcttctgtc	7	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182635139	A	A	182635139	3	1	9	1	0	0	0	0	1	0	0	0	13421	595	21	2	396	2	RGS8	1	182635139	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17666	182635139	66615482	2026	10177											
DHX9	1660	broad.mit.edu	37	chr1	182812578	182812578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcttttggggtaagtacCtatggcgaagcacttgagat	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182812578	A	A	182812578	1	1	9	0	1	0	0	0	0	0	0	0	4556	696	24	2		2	DHX9	1	182812578	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	177439	182812578	66438043	2027	10178											
DHX9	1660	broad.mit.edu	37	chr1	182827650	182827650	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccccattatagtagatttGagtagtgttgttaatgtgtg	11	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182827650	T	T	182827650	1	4	9	0	1	0	0	0	0	0	0	0	4556	1305	45	3		3	DHX9	1	182827650	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15072	182827650	66422971	2028	10179											
DHX9	1660	broad.mit.edu	37	chr1	182848416	182848416	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgacaccagagatgttcCgaacaccattgcatgaaatt	7	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182848416	A	A	182848416	2	1	9	1	0	0	0	0	0	0	0	1	4556	644	23	1		1	DHX9	1	182848416	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20766	182848416	66402205	2029	10180											
DHX9	1660	broad.mit.edu	37	chr1	182856252	182856252	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtcctcccaagatggccCgatacgacaatggaagcgga	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182856252	A	A	182856252	2	1	9	1	0	0	0	0	0	0	0	1	4556	644	23	1		1	DHX9	1	182856252	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7836	182856252	66394369	2030	10181											
LAMC1	3915	broad.mit.edu	37	chr1	183083708	183083708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaatgctacttcgaccCtgaactctatcgttccactg	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183083708	A	A	183083708	3	1	9	1	0	0	0	0	1	0	0	0	8686	681	24	2	1082	2	LAMC1	1	183083708	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	227456	183083708	66166913	2031	10182											
LAMC1	3915	broad.mit.edu	37	chr1	183083734	183083734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatcgttccactggccatGggggccactgtaccaactgc	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183083734	T	T	183083734	3	4	9	1	0	0	0	0	1	0	0	0	8686	1348	47	2	1108	2	LAMC1	1	183083734	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	183083734	66166887	2032	10183											
LAMC1	3915	broad.mit.edu	37	chr1	183094584	183094584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagagcagctgtaacccCgtgacggggcagtgtgaatg	15	10	0	3	rs141471265	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183094584	A	A	183094584	2	1	9	1	0	0	0	0	0	0	0	1	8686	639	23	1		1	LAMC1	1	183094584	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10850	183094584	66156037	2033	10184											
LAMC1	3915	broad.mit.edu	37	chr1	183101564	183101564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagctgatgacattgttcGagtggcaaagacagccaatg	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183101564	T	T	183101564	3	4	9	1	0	0	0	0	1	0	0	0	8686	1058	37	3	3678	3	LAMC1	1	183101564	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6980	183101564	66149057	2034	10185											
LAMC1	3915	broad.mit.edu	37	chr1	183102540	183102540	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacattatttgtgtcttaGgtatgaacaagcgaagaaca	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183102540	T	T	183102540	5	4	9	1	0	0	0	0	0	0	1	0	8686	1014	35	2	3790	2	LAMC1	1	183102540	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	976	183102540	66148081	2035	10186											
LAMC1	3915	broad.mit.edu	37	chr1	183104018	183104018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgggtctgtgatgatgcCgtactttcagagacagcaga	12	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183104018	A	A	183104018	1	1	9	0	1	0	0	0	0	0	0	0	8686	667	23	1		1	LAMC1	1	183104018	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1478	183104018	66146603	2036	10187											
LAMC2	3918	broad.mit.edu	37	chr1	183177132	183177132	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acactgatggcattcactgcGagaagtgcaagaatggcttt	11	8	1	3	rs146325169	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183177132	T	T	183177132	4	4	9	1	0	0	0	0	0	1	0	0	8687	1059	37	3	202	3	LAMC2	1	183177132	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73114	183177132	66073489	2037	10188											
LAMC2	3918	broad.mit.edu	37	chr1	183177200	183177200	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccctgcaattgtaactcCaaaggtagctgaaaaggacg	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183177200	A	A	183177200	2	1	9	1	0	0	0	0	0	0	0	1	8687	581	21	2		2	LAMC2	1	183177200	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	183177200	66073421	2038	10189											
LAMC2	3918	broad.mit.edu	37	chr1	183194834	183194834	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcacagccctccgcatcCgagctacatatggagaatac	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183194834	A	A	183194834	2	1	9	1	0	0	0	0	0	0	0	1	8687	644	23	1		1	LAMC2	1	183194834	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17634	183194834	66055787	2039	10190											
LAMC2	3918	broad.mit.edu	37	chr1	183195890	183195890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccctgtctctggagcccCagcaccctgggttgaacagt	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183195890	A	A	183195890	3	1	9	1	0	0	0	0	1	0	0	0	8687	594	21	2	1158	2	LAMC2	1	183195890	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1056	183195890	66054731	2040	10191											
LAMC2	3918	broad.mit.edu	37	chr1	183196722	183196722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattggtttctacaacgatcCgcacgacccccgcagctgca	8	15	1	0	rs147781376		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183196722	A	A	183196722	3	1	9	1	0	0	0	0	1	0	0	0	8687	652	23	1	1396	1	LAMC2	1	183196722	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	832	183196722	66053899	2041	10192											
LAMC2	3918	broad.mit.edu	37	chr1	183196733	183196733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacgatccgcacgaccccCgcagctgcaagccatgtccc	8	19	0	0	rs150065651	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183196733	A	A	183196733	3	1	9	1	0	0	0	0	1	0	0	0	8687	652	23	1	1407	1	LAMC2	1	183196733	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	183196733	66053888	2042	10193											
LAMC2	3918	broad.mit.edu	37	chr1	183196763	183196763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatgtccctgtcataacGggttcagctgctcagtgatg	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183196763	T	T	183196763	3	4	9	1	0	0	0	0	1	0	0	0	8687	1116	39	1	1437	1	LAMC2	1	183196763	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	183196763	66053858	2043	10194											
SMG7	9887	broad.mit.edu	37	chr1	183495796	183495796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtgaagtcttcccaattGggaattatcagcaataaaca	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183495796	T	T	183495796	3	4	9	1	0	0	0	0	1	0	0	0	14912	1339	47	2	396	2	SMG7	1	183495796	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	299033	183495796	65754825	2044	10195											
SMG7	9887	broad.mit.edu	37	chr1	183515434	183515434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggtcaccaggagtcttcCgtccagagcaggatcctgta	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183515434	A	A	183515434	3	1	9	1	0	0	0	0	1	0	0	0	14912	652	23	1	2770	1	SMG7	1	183515434	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19638	183515434	65735187	2045	10196											
NCF2	4688	broad.mit.edu	37	chr1	183529217	183529217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttgtttctatagtcttGgagtagcacttaccctttga	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183529217	T	T	183529217	1	4	9	0	1	0	0	0	0	0	0	0	10312	1363	47	2		2	NCF2	1	183529217	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13783	183529217	65721404	2046	10197											
NCF2	4688	broad.mit.edu	37	chr1	183533089	183533089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtctgtggttgatagccCaagctatcccatcttctacc	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183533089	A	A	183533089	1	1	9	0	1	0	0	0	0	0	0	0	10312	609	21	2		2	NCF2	1	183533089	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3872	183533089	65717532	2047	10198											
NCF2	4688	broad.mit.edu	37	chr1	183538298	183538298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatctctggggttttcGgtctgggtggaggctcagct	16	7	3	2	rs144451516		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183538298	T	T	183538298	3	4	9	1	0	0	0	0	1	0	0	0	10312	1116	39	1	924	1	NCF2	1	183538298	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5209	183538298	65712323	2048	10199											
NCF2	4688	broad.mit.edu	37	chr1	183543661	183543661	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcgattttggaatgtctGggctcagacttcatgctcgt	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183543661	T	T	183543661	2	4	9	1	0	0	0	0	0	0	0	1	10312	1335	47	2		2	NCF2	1	183543661	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5363	183543661	65706960	2049	10200											
NCF2	4688	broad.mit.edu	37	chr1	183559353	183559353	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaatgttgaagcaaatccGggagtgggggtcctggacgg	17	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183559353	T	T	183559353	2	4	9	1	0	0	0	0	0	0	0	1	10312	1115	39	1		1	NCF2	1	183559353	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15692	183559353	65691268	2050	10201											
ARPC5	10092	broad.mit.edu	37	chr1	183604767	183604767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtccaccttccggaagcGggccgacgacactgtgttct	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183604767	T	T	183604767	3	4	9	1	0	0	0	0	1	0	0	0	978	1116	39	1	443	1	ARPC5	1	183604767	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45414	183604767	65645854	2051	10202											
GLT25D2	23127	broad.mit.edu	37	chr1	183942680	183942680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacaagagaaaggtgaatGggactactgttgaccgggtg	14	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183942680	T	T	183942680	1	4	9	0	1	0	0	0	0	0	0	0	6531	1363	47	2		2	GLT25D2	1	183942680	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	337913	183942680	65307941	2052	10203											
C1orf21	81563	broad.mit.edu	37	chr1	184588669	184588669	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggtcgggattactgttcGgaagaagaggatatcacata	13	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184588669	T	T	184588669	2	4	9	1	0	0	0	0	0	0	0	1	2049	1103	39	1		1	C1orf21	1	184588669	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	645989	184588669	64661952	2053	10204											
EDEM3	80267	broad.mit.edu	37	chr1	184679499	184679499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaagcagggcagagacGgtatctaattagtgtagcaa	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184679499	T	T	184679499	1	4	9	0	1	0	0	0	0	0	0	0	4953	1131	39	1		1	EDEM3	1	184679499	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	90830	184679499	64571122	2054	10205											
FAM129A	116496	broad.mit.edu	37	chr1	184787866	184787866	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgtacttcactgaatcccGagctcactggtcccatgagc	8	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184787866	T	T	184787866	4	4	9	1	0	0	0	0	0	1	0	0	5482	1059	37	3	1731	3	FAM129A	1	184787866	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108367	184787866	64462755	2055	10206											
FAM129A	116496	broad.mit.edu	37	chr1	184868315	184868315	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatccatggcttaccttGgtcttcaaaaactgtgacgt	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184868315	T	T	184868315	2	4	9	1	0	0	0	0	0	0	0	1	5482	1335	47	2		2	FAM129A	1	184868315	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	80449	184868315	64382306	2056	10207											
C1orf25	81627	broad.mit.edu	37	chr1	185112462	185112462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattgaataaataaaatgGggttccaaaaaagtgtcctc	7	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185112462	T	T	185112462	1	4	9	0	1	0	0	0	0	0	0	0	2056	1247	43	2		2	C1orf25	1	185112462	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	244147	185112462	64138159	2057	10208											
C1orf26	54823	broad.mit.edu	37	chr1	185144000	185144000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaatccctataaaatccCgtgacaccctccagaaactt	3	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185144000	A	A	185144000	3	1	9	1	0	0	0	0	1	0	0	0	2057	652	23	1	735	1	C1orf26	1	185144000	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31538	185144000	64106621	2058	10209											
C1orf26	54823	broad.mit.edu	37	chr1	185191085	185191085	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagaaatcactgttttctcGagttctcatcttccccaacc	4	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185191085	T	T	185191085	2	4	9	1	0	0	0	0	0	0	0	1	2057	1045	37	3		3	C1orf26	1	185191085	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47085	185191085	64059536	2059	10210											
C1orf26	54823	broad.mit.edu	37	chr1	185191106	185191106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctcatcttccccaaccCagcaggcatcaagaaatctg	6	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185191106	A	A	185191106	2	1	9	1	0	0	0	0	0	0	0	1	2057	581	21	2		2	C1orf26	1	185191106	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	185191106	64059515	2060	10211											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185267153	185267153	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagcctgttagtttgagaGggtcttaaatttgttaaaac	9	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185267153	T	T	185267153	1	4	9	0	1	0	0	0	0	0	0	0	8000	1015	35	2		2	IVNS1ABP	1	185267153	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	76047	185267153	63983468	2061	10212											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185269569	185269569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaacataatgcgcttacCatgagtacagccatttgaaa	7	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185269569	A	A	185269569	3	1	9	1	0	0	0	0	1	0	0	0	8000	608	21	2	706	2	IVNS1ABP	1	185269569	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2416	185269569	63981052	2062	10213											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185269592	185269592	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtacagccatttgaaatcGggctcttggtgttctcatgg	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185269592	T	T	185269592	2	4	9	1	0	0	0	0	0	0	0	1	8000	1124	39	1		1	IVNS1ABP	1	185269592	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	185269592	63981029	2063	10214											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185276710	185276710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaccttattcaacaaacGggagtctcccatacaacttg	5	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185276710	T	T	185276710	3	4	9	1	0	0	0	0	1	0	0	0	8000	1116	39	1	1526	1	IVNS1ABP	1	185276710	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7118	185276710	63973911	2064	10215											
HMCN1	83872	broad.mit.edu	37	chr1	185897773	185897773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagtgcaggtactggacGggcacagacattttttgacg	13	9	0	2	rs141775073		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185897773	T	T	185897773	3	4	9	1	0	0	0	0	1	0	0	0	7287	1116	39	1	1564	1	HMCN1	1	185897773	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	621063	185897773	63352848	2065	10216											
HMCN1	83872	broad.mit.edu	37	chr1	185932948	185932948	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatcaaaaatgcagctccCaaagatgcagggatctatgg	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185932948	A	A	185932948	2	1	9	1	0	0	0	0	0	0	0	1	7287	581	21	2		2	HMCN1	1	185932948	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35175	185932948	63317673	2066	10217											
HMCN1	83872	broad.mit.edu	37	chr1	185951418	185951418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacttattggaatcagccCttcagtggccaatgttattg	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185951418	A	A	185951418	3	1	9	1	0	0	0	0	1	0	0	0	7287	681	24	2	2757	2	HMCN1	1	185951418	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18470	185951418	63299203	2067	10218											
HMCN1	83872	broad.mit.edu	37	chr1	185959424	185959424	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaaggcccagagtgtttGgagatcaacgaggactgtcc	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185959424	T	T	185959424	4	4	9	1	0	0	0	0	0	1	0	0	7287	1349	47	2	3312	2	HMCN1	1	185959424	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8006	185959424	63291197	2068	10219											
HMCN1	83872	broad.mit.edu	37	chr1	185959468	185959468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataagcctgttgagatctcCgtccttgcaggggaagaggt	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185959468	A	A	185959468	2	1	9	1	0	0	0	0	0	0	0	1	7287	639	23	1		1	HMCN1	1	185959468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	185959468	63291153	2069	10220											
HMCN1	83872	broad.mit.edu	37	chr1	185962357	185962357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgaagatcactgaaaccCgcacttcagatagtgggatg	10	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185962357	A	A	185962357	3	1	9	1	0	0	0	0	1	0	0	0	7287	652	23	1	3511	1	HMCN1	1	185962357	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2889	185962357	63288264	2070	10221											
HMCN1	83872	broad.mit.edu	37	chr1	186024578	186024578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgaaattattgtgaccCgagggaagagtatctccttg	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186024578	A	A	186024578	2	1	9	1	0	0	0	0	0	0	0	1	7287	644	23	1		1	HMCN1	1	186024578	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62221	186024578	63226043	2071	10222											
HMCN1	83872	broad.mit.edu	37	chr1	186083020	186083020	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaaagctatacatttgactCgaagctcatcttatattaca	4	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186083020	A	A	186083020	1	1	9	0	1	0	0	0	0	0	0	0	7287	899	31	3		3	HMCN1	1	186083020	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58442	186083020	63167601	2072	10223											
HMCN1	83872	broad.mit.edu	37	chr1	186099758	186099758	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccagtggaacagaaagGgagtggatattgaaattagc	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186099758	T	T	186099758	4	4	9	1	0	0	0	0	0	1	0	0	7287	1233	43	2	13497	2	HMCN1	1	186099758	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16738	186099758	63150863	2073	10224											
HMCN1	83872	broad.mit.edu	37	chr1	186106021	186106021	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaatttgaatgtgttgctCgaaacttaatgggttctgtc	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186106021	A	A	186106021	2	1	9	1	0	0	0	0	0	0	0	1	7287	876	31	3		3	HMCN1	1	186106021	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6263	186106021	63144600	2074	10225											
HMCN1	83872	broad.mit.edu	37	chr1	186106042	186106042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacttaatgggttctgtcCttgtcagagtgccagtcata	10	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186106042	A	A	186106042	3	1	9	1	0	0	0	0	1	0	0	0	7287	681	24	2	13901	2	HMCN1	1	186106042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	186106042	63144579	2075	10226											
HMCN1	83872	broad.mit.edu	37	chr1	186120775	186120775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtttctattctaaatccCatttattggacaacagcaaa	4	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186120775	A	A	186120775	2	1	9	1	0	0	0	0	0	0	0	1	7287	581	21	2		2	HMCN1	1	186120775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14733	186120775	63129846	2076	10227											
HMCN1	83872	broad.mit.edu	37	chr1	186147655	186147655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaacatttattaggggacGggaaatcttgcgctggattg	13	6	1	0	rs144069476	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186147655	T	T	186147655	3	4	9	1	0	0	0	0	1	0	0	0	7287	1116	39	1	16465	1	HMCN1	1	186147655	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26880	186147655	63102966	2077	10228											
HMCN1	83872	broad.mit.edu	37	chr1	186147779	186147779	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagcattacagacagtactCacatctctacagctcctact	4	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186147779	A	A	186147779	4	1	9	1	0	0	0	0	0	1	0	0	7287	838	29	3	16589	3	HMCN1	1	186147779	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	124	186147779	63102842	2078	10229											
HMCN1	83872	broad.mit.edu	37	chr1	186158995	186158995	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtttatatagctgtgtcCgcctatccatactaaggaac	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186158995	A	A	186158995	2	1	9	1	0	0	0	0	0	0	0	1	7287	639	23	1		1	HMCN1	1	186158995	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11216	186158995	63091626	2079	10230											
TPR	7175	broad.mit.edu	37	chr1	186292833	186292833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacctgaactggtggtccCaactcctgaggtggggcatg	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186292833	A	A	186292833	3	1	9	1	0	0	0	0	1	0	0	0	16540	593	21	2	845	2	TPR	1	186292833	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133838	186292833	62957788	2080	10231											
TPR	7175	broad.mit.edu	37	chr1	186303558	186303558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgggcggatactagccCtgggtgttgacttatttcca	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186303558	A	A	186303558	3	1	9	1	0	0	0	0	1	0	0	0	16540	681	24	2	2074	2	TPR	1	186303558	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10725	186303558	62947063	2081	10232											
TPR	7175	broad.mit.edu	37	chr1	186306097	186306097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaacacatatttctttaGgtgtataacaggaaagaatt	7	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186306097	T	T	186306097	1	4	9	0	1	0	0	0	0	0	0	0	16540	1015	35	2		2	TPR	1	186306097	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2539	186306097	62944524	2082	10233											
TPR	7175	broad.mit.edu	37	chr1	186315252	186315252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaaaaaaaaattaatacGgttaacctatttacctgttg	5	5	0	0	rs146593477	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186315252	T	T	186315252	1	4	9	0	1	0	0	0	0	0	0	0	16540	1131	39	1		1	TPR	1	186315252	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9155	186315252	62935369	2083	10234											
TPR	7175	broad.mit.edu	37	chr1	186316442	186316442	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtttttccttgttcagGgattcttctaaactagtaac	6	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186316442	T	T	186316442	2	4	9	1	0	0	0	0	0	0	0	1	16540	1219	43	2		2	TPR	1	186316442	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1190	186316442	62934179	2084	10235											
PLA2G4A	5321	broad.mit.edu	37	chr1	186916007	186916007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttttattttaggtgtctGgggcagtgccttttccatat	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186916007	T	T	186916007	3	4	9	1	0	0	0	0	1	0	0	0	12096	1357	47	2	1220	2	PLA2G4A	1	186916007	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	599565	186916007	62334614	2085	10236											
FAM5C	339479	broad.mit.edu	37	chr1	190067937	190067937	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacttctattcgtctgtcCgttttctgcagcagatattt	8	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067937	A	A	190067937	2	1	9	1	0	0	0	0	0	0	0	1	5645	639	23	1		1	FAM5C	1	190067937	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3151930	190067937	59182684	2086	10237											
RGS18	64407	broad.mit.edu	37	chr1	192128414	192128414	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtttcatgaagacaccCgctccagtagatctgggcac	10	12	2	4	rs139204070		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192128414	A	A	192128414	3	1	9	1	0	0	0	0	1	0	0	0	13409	652	23	1	190	1	RGS18	1	192128414	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2060477	192128414	57122207	2087	10238											
RGS21	431704	broad.mit.edu	37	chr1	192316470	192316470	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacaggtcaccaactgcGgaaacaatgacatggtctga	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192316470	T	T	192316470	2	4	9	1	0	0	0	0	0	0	0	1	13413	1103	39	1		1	RGS21	1	192316470	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	188056	192316470	56934151	2088	10239											
RGS2	5997	broad.mit.edu	37	chr1	192779455	192779455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctgctgaactgaaaaggGgaactctgatgtgcgtaagc	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192779455	T	T	192779455	1	4	9	0	1	0	0	0	0	0	0	0	13411	1247	43	2		2	RGS2	1	192779455	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	462985	192779455	56471166	2089	10240											
RGS2	5997	broad.mit.edu	37	chr1	192780736	192780736	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctacatgaaatgtaaaaGggagcccagaaatggaggac	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192780736	T	T	192780736	1	4	9	0	1	0	0	0	0	0	0	0	13411	1015	35	2		2	RGS2	1	192780736	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1281	192780736	56469885	2090	10241											
TROVE2	6738	broad.mit.edu	37	chr1	193038615	193038615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcatgaaatgtggcatgtGgggtcgtgccctccggaagg	16	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193038615	T	T	193038615	3	4	9	1	0	0	0	0	1	0	0	0	16701	1357	47	2	433	2	TROVE2	1	193038615	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	257879	193038615	56212006	2091	10242											
TROVE2	6738	broad.mit.edu	37	chr1	193038626	193038626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcatgtggggtcgtgccCtccggaaggctatagcggac	17	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193038626	A	A	193038626	3	1	9	1	0	0	0	0	1	0	0	0	16701	681	24	2	444	2	TROVE2	1	193038626	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	193038626	56211995	2092	10243											
TROVE2	6738	broad.mit.edu	37	chr1	193045603	193045603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattttcccttaattcctGgtatttctgcctatgttatt	4	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193045603	T	T	193045603	1	4	9	0	1	0	0	0	0	0	0	0	16701	1363	47	2		2	TROVE2	1	193045603	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6977	193045603	56205018	2093	10244											
CDC73	79577	broad.mit.edu	37	chr1	193107257	193107257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaagagagattggctgccCgtttggagggtcacaaagaa	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193107257	A	A	193107257	3	1	9	1	0	0	0	0	1	0	0	0	3115	652	23	1	488	1	CDC73	1	193107257	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61654	193107257	56143364	2094	10245											
B3GALT2	8707	broad.mit.edu	37	chr1	193149782	193149782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaggataacgctcacttGggtagaggtctggtggcatg	15	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193149782	T	T	193149782	3	4	9	1	0	0	0	0	1	0	0	0	1253	1348	47	2	361	2	B3GALT2	1	193149782	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42525	193149782	56100839	2095	10246											
CDC73	79577	broad.mit.edu	37	chr1	193181526	193181526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttgtctttataggatctcGaacacccattatcataattc	4	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193181526	T	T	193181526	3	4	9	1	0	0	0	0	1	0	0	0	3115	1058	37	3	1123	3	CDC73	1	193181526	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31744	193181526	56069095	2096	10247											
CDC73	79577	broad.mit.edu	37	chr1	193205369	193205369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccctacctccccccaccCacttttctacttgtagggac	5	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193205369	A	A	193205369	1	1	9	0	1	0	0	0	0	0	0	0	3115	609	21	2		2	CDC73	1	193205369	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23843	193205369	56045252	2097	10248											
KCNT2	343450	broad.mit.edu	37	chr1	196300362	196300362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgaacttcctatatatGgagaataaggtgggtaacct	12	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196300362	T	T	196300362	3	4	9	1	0	0	0	0	1	0	0	0	8162	1348	47	2	1424	2	KCNT2	1	196300362	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3094993	196300362	52950259	2098	10249											
CFH	3075	broad.mit.edu	37	chr1	196646702	196646702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattttggacaagcagtacGgtttgtatgtaactcaggct	10	8	1	0	rs139360826		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196646702	T	T	196646702	3	4	9	1	0	0	0	0	1	0	0	0	3313	1116	39	1	542	1	CFH	1	196646702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	346340	196646702	52603919	2099	10250											
CFH	3075	broad.mit.edu	37	chr1	196654150	196654150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaatgattaattttaacGgatacttatttctgcattat	4	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196654150	T	T	196654150	1	4	9	0	1	0	0	0	0	0	0	0	3313	1131	39	1		1	CFH	1	196654150	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7448	196654150	52596471	2100	10251											
CFH	3075	broad.mit.edu	37	chr1	196712701	196712701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccttatgaaatgtttGgggatgaagaagtgatgtgt	15	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196712701	T	T	196712701	3	4	9	1	0	0	0	0	1	0	0	0	3313	1348	47	2	3349	2	CFH	1	196712701	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58551	196712701	52537920	2101	10252											
CFH	3075	broad.mit.edu	37	chr1	196716355	196716355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgaatttgtgtgtaaacGgggatatcgtctttcatcac	10	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196716355	T	T	196716355	3	4	9	1	0	0	0	0	1	0	0	0	3313	1116	39	1	3712	1	CFH	1	196716355	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3654	196716355	52534266	2102	10253											
CFHR1	3078	broad.mit.edu	37	chr1	196799637	196799637	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgttttttagattctacGggaaaatgtgggccccctcc	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196799637	T	T	196799637	2	4	9	1	0	0	0	0	0	0	0	1	3314	1103	39	1		1	CFHR1	1	196799637	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83282	196799637	52450984	2103	10254											
CFHR4	10877	broad.mit.edu	37	chr1	196884178	196884178	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgtgccacagtcaagagtcGagtaccaatgccagtcctac	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196884178	C	C	196884178	3	2	9	1	0	0	0	0	1	0	0	0	3317	1059	37	4	727	4	CFHR4	1	196884178	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84541	196884178	52366443	2104	10255											
CFHR2	3080	broad.mit.edu	37	chr1	196927063	196927063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctccacctattgacaatgGagacattacttcattcctgt	5	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196927063	T	T	196927063	3	4	9	1	0	0	0	0	1	0	0	0	3315	1174	41	3	487	3	CFHR2	1	196927063	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42885	196927063	52323558	2105	10256											
CFHR5	81494	broad.mit.edu	37	chr1	196964899	196964899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccaatggtgaagttaaGgagataagaaaagaggaata	11	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196964899	T	T	196964899	3	4	9	1	0	0	0	0	1	0	0	0	3318	991	35	2	678	2	CFHR5	1	196964899	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37836	196964899	52285722	2106	10257											
ASPM	259266	broad.mit.edu	37	chr1	197071276	197071276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcagctctatttgcttGgtattgctgttggatcacaa	9	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197071276	T	T	197071276	3	4	9	1	0	0	0	0	1	0	0	0	1060	1357	47	2	3372	2	ASPM	1	197071276	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106377	197071276	52179345	2107	10258											
ASPM	259266	broad.mit.edu	37	chr1	197072531	197072531	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagattgaagcaccagtacCgcatgacggagttcaatata	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197072531	A	A	197072531	2	1	9	1	0	0	0	0	0	0	0	1	1060	639	23	1		1	ASPM	1	197072531	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1255	197072531	52178090	2108	10259											
ASPM	259266	broad.mit.edu	37	chr1	197087024	197087024	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgccaatatttctgaatgacGagtgctgcattaactctttt	7	9	2	2	rs148964635		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197087024	T	T	197087024	2	4	9	1	0	0	0	0	0	0	0	1	1060	1045	37	3		3	ASPM	1	197087024	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14493	197087024	52163597	2109	10260											
ASPM	259266	broad.mit.edu	37	chr1	197108949	197108949	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtgccacagcgataatGggttttgtccttttgtttgt	11	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197108949	T	T	197108949	2	4	9	1	0	0	0	0	0	0	0	1	1060	1335	47	2		2	ASPM	1	197108949	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21925	197108949	52141672	2110	10261											
ASPM	259266	broad.mit.edu	37	chr1	197115411	197115411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccaggagaacgtcccCgaagcaaaggaaaggagacc	13	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197115411	A	A	197115411	3	1	9	1	0	0	0	0	1	0	0	0	1060	652	23	1	10388	1	ASPM	1	197115411	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6462	197115411	52135210	2111	10262											
ZBTB41	360023	broad.mit.edu	37	chr1	197128604	197128604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatttgttcaggtcgaactGggtgaactatatttgcaggt	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197128604	T	T	197128604	3	4	9	1	0	0	0	0	1	0	0	0	17669	1348	47	2	118	2	ZBTB41	1	197128604	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13193	197128604	52122017	2112	10263											
ZBTB41	360023	broad.mit.edu	37	chr1	197128939	197128939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaggatacaagtttttcCtcagaagtactgagaggatc	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197128939	A	A	197128939	3	1	9	1	0	0	0	0	1	0	0	0	17669	680	24	2	453	2	ZBTB41	1	197128939	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	335	197128939	52121682	2113	10264											
ZBTB41	360023	broad.mit.edu	37	chr1	197168886	197168886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctccagcatttttaaccCatgttttttccctaataaaa	2	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197168886	A	A	197168886	3	1	9	1	0	0	0	0	1	0	0	0	17669	594	21	2	2051	2	ZBTB41	1	197168886	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39947	197168886	52081735	2114	10265											
CRB1	23418	broad.mit.edu	37	chr1	197411331	197411331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgagtgtgcctctgatcCgtgtgtcaatggaggtctgt	14	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197411331	A	A	197411331	3	1	9	1	0	0	0	0	1	0	0	0	3880	652	23	1	3956	1	CRB1	1	197411331	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	242445	197411331	51839290	2115	10266											
DENND1B	163486	broad.mit.edu	37	chr1	197479767	197479767	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaatgccgcccaagaccGggtataagcagatcatctga	11	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197479767	T	T	197479767	2	4	9	1	0	0	0	0	0	0	0	1	4467	1103	39	1		1	DENND1B	1	197479767	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68436	197479767	51770854	2116	10267											
DENND1B	163486	broad.mit.edu	37	chr1	197564419	197564419	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctagctactccatcaccCgtagctgtagactgcttctt	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197564419	A	A	197564419	2	1	9	1	0	0	0	0	0	0	0	1	4467	639	23	1		1	DENND1B	1	197564419	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84652	197564419	51686202	2117	10268											
DENND1B	163486	broad.mit.edu	37	chr1	197705201	197705201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaaatgattgtgaagccCgtgaaagtttcagttctcga	10	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197705201	A	A	197705201	1	1	9	0	1	0	0	0	0	0	0	0	4467	667	23	1		1	DENND1B	1	197705201	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	140782	197705201	51545420	2118	10269											
LHX9	56956	broad.mit.edu	37	chr1	197889150	197889150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccctgtgcgccggctgcGggggcaagatctcggacagg	17	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197889150	T	T	197889150	3	4	9	1	0	0	0	0	1	0	0	0	8849	1116	39	1	261	1	LHX9	1	197889150	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	183949	197889150	51361471	2119	10270											
LHX9	56956	broad.mit.edu	37	chr1	197889164	197889164	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcgggggcaagatctcGgacaggtactatctgctggc	16	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197889164	T	T	197889164	2	4	9	1	0	0	0	0	0	0	0	1	8849	1103	39	1		1	LHX9	1	197889164	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	197889164	51361457	2120	10271											
LHX9	56956	broad.mit.edu	37	chr1	197889248	197889248	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagctggccctcgagtcCgagctcacctgctttgccaa	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197889248	A	A	197889248	2	1	9	1	0	0	0	0	0	0	0	1	8849	639	23	1		1	LHX9	1	197889248	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	197889248	51361373	2121	10272											
NEK7	140609	broad.mit.edu	37	chr1	198247181	198247181	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattggaacacatgcattctCgaagagtcatgcatagaggt	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198247181	A	A	198247181	2	1	9	1	0	0	0	0	0	0	0	1	10424	876	31	3		3	NEK7	1	198247181	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	357933	198247181	51003440	2122	10273											
PTPRC	5788	broad.mit.edu	37	chr1	198703463	198703463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttacctcctaggtcccaGggatgaaactgttgatgatt	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198703463	T	T	198703463	3	4	9	1	0	0	0	0	1	0	0	0	12905	1000	35	2	2273	2	PTPRC	1	198703463	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	456282	198703463	50547158	2123	10274											
PTPRC	5788	broad.mit.edu	37	chr1	198703499	198703499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttctggaggatgatttGggaacagaaagccacagtta	12	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198703499	T	T	198703499	3	4	9	1	0	0	0	0	1	0	0	0	12905	1357	47	2	2309	2	PTPRC	1	198703499	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	198703499	50547122	2124	10275											
NR5A2	2494	broad.mit.edu	37	chr1	200090029	200090029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaaacttcgttctctcCagtttgatcaacgagagttc	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200090029	A	A	200090029	3	1	9	1	0	0	0	0	1	0	0	0	10731	595	21	2	1350	2	NR5A2	1	200090029	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1386530	200090029	49160592	2125	10276											
KIF14	9928	broad.mit.edu	37	chr1	200534577	200534577	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgagattgcttacagttAtcttgactttcttcatcttg	7	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200534577	G	G	200534577	2	3	9	1	0	0	0	0	0	0	0	1	8346	446	16	5		5	KIF14	1	200534577	Silent	SNP	A	TCGA-05-4396-01A-21D-1855-08	444548	200534577	48716044	2126	10277											
KIF14	9928	broad.mit.edu	37	chr1	200562859	200562859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtctttgcttccccaactGggataatactcactgtccca	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200562859	T	T	200562859	3	4	9	1	0	0	0	0	1	0	0	0	8346	1348	47	2	2422	2	KIF14	1	200562859	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28282	200562859	48687762	2127	10278											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200730198	200730198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaaaattggtaactgaacGagatctccacaagaaaccca	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200730198	T	T	200730198	3	4	9	1	0	0	0	0	1	0	0	0	2638	1058	37	3	377	3	CAMSAP1L1	1	200730198	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	167339	200730198	48520423	2128	10279											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200811194	200811194	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccgtcttttgtacagcctCgtgttgttcgtccacaagga	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200811194	A	A	200811194	3	1	9	1	0	0	0	0	1	0	0	0	2638	884	31	3	1026	3	CAMSAP1L1	1	200811194	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80996	200811194	48439427	2129	10280											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200816826	200816826	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcatagggacatggccCaaagagaaaaggtaaacaaa	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200816826	A	A	200816826	2	1	9	1	0	0	0	0	0	0	0	1	2638	581	21	2		2	CAMSAP1L1	1	200816826	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5632	200816826	48433795	2130	10281											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200818647	200818647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagagagcaacaatcttGggtgatttcacctccacaac	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200818647	T	T	200818647	3	4	9	1	0	0	0	0	1	0	0	0	2638	1357	47	2	2792	2	CAMSAP1L1	1	200818647	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1821	200818647	48431974	2131	10282											
C1orf106	55765	broad.mit.edu	37	chr1	200880656	200880656	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgccccactcactacacGgtgacagtgccagattcctg	9	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200880656	T	T	200880656	2	4	9	1	0	0	0	0	0	0	0	1	2000	1103	39	1		1	C1orf106	1	200880656	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	62009	200880656	48369965	2132	10283											
KIF21B	23046	broad.mit.edu	37	chr1	200943958	200943958	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagaccttgatgacaccCgcacggcaggcgctgagcag	12	14	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200943958	A	A	200943958	2	1	9	1	0	0	0	0	0	0	0	1	8359	639	23	1		1	KIF21B	1	200943958	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63302	200943958	48306663	2133	10284											
KIF21B	23046	broad.mit.edu	37	chr1	200948812	200948812	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctgcgatctcctgtccCgtaaccaagttccacatctt	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200948812	A	A	200948812	2	1	9	1	0	0	0	0	0	0	0	1	8359	639	23	1		1	KIF21B	1	200948812	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4854	200948812	48301809	2134	10285											
CACNA1S	779	broad.mit.edu	37	chr1	201044686	201044686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccagggtaggacggccCgccgtaggccatgatcccat	13	14	0	1	rs147888089		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201044686	A	A	201044686	3	1	9	1	0	0	0	0	1	0	0	0	2573	652	23	1	3864	1	CACNA1S	1	201044686	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95874	201044686	48205935	2135	10286											
CACNA1S	779	broad.mit.edu	37	chr1	201047173	201047173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactggcgcaggcccagccCgtacatcttcatcagcatct	9	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201047173	A	A	201047173	3	1	9	1	0	0	0	0	1	0	0	0	2573	652	23	1	4304	1	CACNA1S	1	201047173	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2487	201047173	48203448	2136	10287											
CACNA1S	779	broad.mit.edu	37	chr1	201054021	201054021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtaactggactctaccCtcatgtctcagggagctggg	13	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201054021	A	A	201054021	1	1	9	0	1	0	0	0	0	0	0	0	2573	696	24	2		2	CACNA1S	1	201054021	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6848	201054021	48196600	2137	10288											
TMEM9	252839	broad.mit.edu	37	chr1	201115840	201115840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatggcgtgtgggaatccCactggcttcctgagaccctg	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201115840	A	A	201115840	1	1	9	0	1	0	0	0	0	0	0	0	16340	609	21	2		2	TMEM9	1	201115840	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	61819	201115840	48134781	2138	10289											
PKP1	5317	broad.mit.edu	37	chr1	201297956	201297956	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaggaacttcacctccCgattctaagaagagactgtc	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201297956	A	A	201297956	2	1	9	1	0	0	0	0	0	0	0	1	12079	644	23	1		1	PKP1	1	201297956	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	182116	201297956	47952665	2139	10290											
TNNT2	7139	broad.mit.edu	37	chr1	201332518	201332518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgttctcctcctcctctCgtcgagccctctcttcctga	5	19	3	1	rs45501500		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201332518	A	A	201332518	3	1	9	1	0	0	0	0	1	0	0	0	16454	884	31	3	417	3	TNNT2	1	201332518	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34562	201332518	47918103	2140	10291											
TNNI1	7135	broad.mit.edu	37	chr1	201382239	201382239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccttggcgtgcagctccCggcacaggtcctgggggccg	15	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201382239	A	A	201382239	3	1	9	1	0	0	0	0	1	0	0	0	16449	652	23	1	375	1	TNNI1	1	201382239	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49721	201382239	47868382	2141	10292											
CSRP1	1465	broad.mit.edu	37	chr1	201453963	201453963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgttcttcctccaccccCagccacaccacccaccctcc	3	24	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201453963	A	A	201453963	1	1	9	0	1	0	0	0	0	0	0	0	4000	609	21	2		2	CSRP1	1	201453963	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	71724	201453963	47796658	2142	10293											
NAV1	89796	broad.mit.edu	37	chr1	201751446	201751446	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgctcgcccctccacttcGggatcctttggctacaagaa	8	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201751446	T	T	201751446	2	4	9	1	0	0	0	0	0	0	0	1	10277	1103	39	1		1	NAV1	1	201751446	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	297483	201751446	47499175	2143	10294											
NAV1	89796	broad.mit.edu	37	chr1	201752564	201752564	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagctttgtcaaaccaccCtcactagccaatcttgacaa	5	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201752564	A	A	201752564	2	1	9	1	0	0	0	0	0	0	0	1	10277	668	24	2		2	NAV1	1	201752564	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1118	201752564	47498057	2144	10295											
NAV1	89796	broad.mit.edu	37	chr1	201752678	201752678	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacaagctcagcatctggGggccctctcccttcctgctt	9	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201752678	T	T	201752678	2	4	9	1	0	0	0	0	0	0	0	1	10277	1219	43	2		2	NAV1	1	201752678	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	114	201752678	47497943	2145	10296											
NAV1	89796	broad.mit.edu	37	chr1	201754446	201754446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatctccacagtaatcagcGggatcggaacactcttccca	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201754446	T	T	201754446	3	4	9	1	0	0	0	0	1	0	0	0	10277	1116	39	1	2900	1	NAV1	1	201754446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1768	201754446	47496175	2146	10297											
NAV1	89796	broad.mit.edu	37	chr1	201755629	201755629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggtgggctgcctgaatcCgatgaccagtcagagctgcc	13	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201755629	A	A	201755629	2	1	9	1	0	0	0	0	0	0	0	1	10277	639	23	1		1	NAV1	1	201755629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1183	201755629	47494992	2147	10298											
NAV1	89796	broad.mit.edu	37	chr1	201763701	201763701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcctcagaaaccacaccCaaaggtaggacatccagcca	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201763701	A	A	201763701	2	1	9	1	0	0	0	0	0	0	0	1	10277	581	21	2		2	NAV1	1	201763701	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8072	201763701	47486920	2148	10299											
NAV1	89796	broad.mit.edu	37	chr1	201777146	201777146	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcagcttcctcatactcGgatatagaggagattgctac	9	9	2	2	rs116101884	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201777146	T	T	201777146	2	4	9	1	0	0	0	0	0	0	0	1	10277	1103	39	1		1	NAV1	1	201777146	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13445	201777146	47473475	2149	10300											
NAV1	89796	broad.mit.edu	37	chr1	201777194	201777194	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagccccctcatccccCaaactacagcatggttctac	4	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201777194	A	A	201777194	2	1	9	1	0	0	0	0	0	0	0	1	10277	581	21	2		2	NAV1	1	201777194	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	201777194	47473427	2150	10301											
NAV1	89796	broad.mit.edu	37	chr1	201778251	201778251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtttaggaaaggctgcGggtactcctaaaaccagttg	12	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201778251	T	T	201778251	1	4	9	0	1	0	0	0	0	0	0	0	10277	1131	39	1		1	NAV1	1	201778251	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1057	201778251	47472370	2151	10302											
NAV1	89796	broad.mit.edu	37	chr1	201780788	201780788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccgggaaacaggaattGgggatgtgcccctggtgatt	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201780788	T	T	201780788	3	4	9	1	0	0	0	0	1	0	0	0	10277	1348	47	2	5010	2	NAV1	1	201780788	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2537	201780788	47469833	2152	10303											
NAV1	89796	broad.mit.edu	37	chr1	201781709	201781709	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaaggaagagctgcttcGggtgctcgactgggtaccca	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201781709	T	T	201781709	3	4	9	1	0	0	0	0	1	0	0	0	10277	1116	39	1	5304	1	NAV1	1	201781709	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	921	201781709	47468912	2153	10304											
IPO9	55705	broad.mit.edu	37	chr1	201816765	201816765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctgaaactacagaaaGggtaagtcagttacttgatt	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201816765	T	T	201816765	3	4	9	1	0	0	0	0	1	0	0	0	7869	1014	35	2	321	2	IPO9	1	201816765	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35056	201816765	47433856	2154	10305											
IPO9	55705	broad.mit.edu	37	chr1	201822157	201822157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtatggtattcgaaccCgttcccgagccgtggagatt	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201822157	A	A	201822157	3	1	9	1	0	0	0	0	1	0	0	0	7869	652	23	1	644	1	IPO9	1	201822157	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5392	201822157	47428464	2155	10306											
IPO9	55705	broad.mit.edu	37	chr1	201823926	201823926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatatatcactcataacttGggtccttttctcttaacttc	3	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201823926	T	T	201823926	1	4	9	0	1	0	0	0	0	0	0	0	7869	1363	47	2		2	IPO9	1	201823926	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1769	201823926	47426695	2156	10307											
IPO9	55705	broad.mit.edu	37	chr1	201824024	201824024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagattctgcctattgtttGgaacaccctaaccgagagtg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201824024	T	T	201824024	3	4	9	1	0	0	0	0	1	0	0	0	7869	1357	47	2	914	2	IPO9	1	201824024	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98	201824024	47426597	2157	10308											
IPO9	55705	broad.mit.edu	37	chr1	201843419	201843419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttgctggtcaagatcCtaaagctgatcatcaacgag	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201843419	A	A	201843419	3	1	9	1	0	0	0	0	1	0	0	0	7869	680	24	2	2834	2	IPO9	1	201843419	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19395	201843419	47407202	2158	10309											
IPO9	55705	broad.mit.edu	37	chr1	201845113	201845113	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagtttgctcagcagccCtgctacataatgttttcagg	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201845113	A	A	201845113	2	1	9	1	0	0	0	0	0	0	0	1	7869	668	24	2		2	IPO9	1	201845113	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1694	201845113	47405508	2159	10310											
LMOD1	25802	broad.mit.edu	37	chr1	201869151	201869151	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttcacctcagtcatctcGgggtcattgttcttcactct	7	13	8	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201869151	T	T	201869151	2	4	9	1	0	0	0	0	0	0	0	1	8930	1103	39	1		1	LMOD1	1	201869151	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24038	201869151	47381470	2160	10311											
RNPEP	6051	broad.mit.edu	37	chr1	201958049	201958049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtttgctggttggctccCgagcagacagcaggaaagaa	14	8	0	2	rs146304401	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201958049	A	A	201958049	2	1	9	1	0	0	0	0	0	0	0	1	13620	639	23	1		1	RNPEP	1	201958049	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88898	201958049	47292572	2161	10312											
RNPEP	6051	broad.mit.edu	37	chr1	201965330	201965330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaaggaggagtacaacGgggtgatagaagaatttttg	14	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201965330	T	T	201965330	3	4	9	1	0	0	0	0	1	0	0	0	13620	1116	39	1	807	1	RNPEP	1	201965330	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7281	201965330	47285291	2162	10313											
ELF3	1999	broad.mit.edu	37	chr1	201981142	201981142	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcgaagacgcaggttctggActggatcagctaccaagtgg	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201981142	T	T	201981142	3	4	9	1	0	0	0	0	1	0	0	0	5097	275	10	5	227	5	ELF3	1	201981142	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	15812	201981142	47269479	2163	10314											
ELF3	1999	broad.mit.edu	37	chr1	201984468	201984468	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagggttggaactataccCgggaccaaactcacggacca	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201984468	A	A	201984468	1	1	9	0	1	0	0	0	0	0	0	0	5097	667	23	1		1	ELF3	1	201984468	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3326	201984468	47266153	2164	10315											
GPR37L1	9283	broad.mit.edu	37	chr1	202092110	202092110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgcggtggctgtggcccCtggctgtctctcttgctgtg	14	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202092110	A	A	202092110	3	1	9	1	0	0	0	0	1	0	0	0	6757	680	24	2	21	2	GPR37L1	1	202092110	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107642	202092110	47158511	2165	10316											
ARL8A	127829	broad.mit.edu	37	chr1	202104622	202104622	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctcatccaatgctccCggaaggtctcgcttgttacc	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202104622	A	A	202104622	2	1	9	1	0	0	0	0	0	0	0	1	950	639	23	1		1	ARL8A	1	202104622	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12512	202104622	47145999	2166	10317											
UBE2T	29089	broad.mit.edu	37	chr1	202302315	202302315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacacagggagagttagcGgtatagacaaggtaggatat	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202302315	T	T	202302315	1	4	9	0	1	0	0	0	0	0	0	0	16999	1131	39	1		1	UBE2T	1	202302315	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	197693	202302315	46948306	2167	10318											
PPP1R12B	4660	broad.mit.edu	37	chr1	202394750	202394750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagatgttgcaggatgccCgccagtggctcaacagtggg	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202394750	A	A	202394750	3	1	9	1	0	0	0	0	1	0	0	0	12456	652	23	1	612	1	PPP1R12B	1	202394750	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92435	202394750	46855871	2168	10319											
PPP1R12B	4660	broad.mit.edu	37	chr1	202418185	202418185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgtctcttctagcacccCgctctgtgtgatcaccaatc	6	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202418185	A	A	202418185	3	1	9	1	0	0	0	0	1	0	0	0	12456	652	23	1	1876	1	PPP1R12B	1	202418185	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23435	202418185	46832436	2169	10320											
SYT2	127833	broad.mit.edu	37	chr1	202568402	202568402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgttgaagtatgggttcaGggtcttcttcttcacggttg	12	8	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202568402	T	T	202568402	3	4	9	1	0	0	0	0	1	0	0	0	15593	991	35	2	270	2	SYT2	1	202568402	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150217	202568402	46682219	2170	10321											
KDM5B	10765	broad.mit.edu	37	chr1	202719882	202719882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtaatcacaaactcccCagcacactgattagttcggt	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202719882	A	A	202719882	3	1	9	1	0	0	0	0	1	0	0	0	8204	594	21	2	2968	2	KDM5B	1	202719882	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151480	202719882	46530739	2171	10322											
KLHL12	59349	broad.mit.edu	37	chr1	202863766	202863766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacgagtccggcaccttccCgggctgtctgcatatctccc	9	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202863766	A	A	202863766	3	1	9	1	0	0	0	0	1	0	0	0	8439	652	23	1	475	1	KLHL12	1	202863766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143884	202863766	46386855	2172	10323											
KLHL12	59349	broad.mit.edu	37	chr1	202880231	202880231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggttagtaggggcatcCgcacatactgtagcaggtta	15	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202880231	A	A	202880231	3	1	9	1	0	0	0	0	1	0	0	0	8439	652	23	1	1070	1	KLHL12	1	202880231	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16465	202880231	46370390	2173	10324											
KLHL12	59349	broad.mit.edu	37	chr1	202880354	202880354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaatgtataattacacacCgtggatcctacttttccaat	5	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202880354	A	A	202880354	1	1	9	0	1	0	0	0	0	0	0	0	8439	667	23	1		1	KLHL12	1	202880354	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	202880354	46370267	2174	10325											
KLHL12	59349	broad.mit.edu	37	chr1	202894061	202894061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagacaactagagttccacGggtttcatttgtgtggggct	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202894061	T	T	202894061	1	4	9	0	1	0	0	0	0	0	0	0	8439	1131	39	1		1	KLHL12	1	202894061	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13707	202894061	46356560	2175	10326											
ADIPOR1	51094	broad.mit.edu	37	chr1	202914124	202914124	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactcacttggaaaaagtccGagagactttctctgaatgac	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202914124	T	T	202914124	2	4	9	1	0	0	0	0	0	0	0	1	318	1057	37	3		3	ADIPOR1	1	202914124	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20063	202914124	46336497	2176	10327											
ADIPOR1	51094	broad.mit.edu	37	chr1	202915632	202915632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgctcttgaagcaagccCgaaaggagggcatgggaggt	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202915632	A	A	202915632	3	1	9	1	0	0	0	0	1	0	0	0	318	652	23	1	782	1	ADIPOR1	1	202915632	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1508	202915632	46334989	2177	10328											
TMEM183A	92703	broad.mit.edu	37	chr1	202989965	202989965	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaggattgcagcctccCgttcagtacgaagatgttca	11	10	2	1	rs145911054	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202989965	A	A	202989965	2	1	9	1	0	0	0	0	0	0	0	1	16225	639	23	1		1	TMEM183A	1	202989965	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	74333	202989965	46260656	2178	10329											
PPFIA4	8497	broad.mit.edu	37	chr1	203045511	203045511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacatgctctccgccttccGggactagccatggcccccag	9	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203045511	T	T	203045511	3	4	9	1	0	0	0	0	1	0	0	0	12408	1116	39	1	2165	1	PPFIA4	1	203045511	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55546	203045511	46205110	2179	10330											
MYBPH	4608	broad.mit.edu	37	chr1	203138103	203138103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttgcaggtgtagacccCagaatcaaaggggctgggtt	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203138103	A	A	203138103	3	1	9	1	0	0	0	0	1	0	0	0	10108	594	21	2	93	2	MYBPH	1	203138103	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92592	203138103	46112518	2180	10331											
MYBPH	4608	broad.mit.edu	37	chr1	203144687	203144687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttcagtcaccttcacttGggggtgcaggcttagtggct	12	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203144687	T	T	203144687	3	4	9	1	0	0	0	0	1	0	0	0	10108	1348	47	2	1276	2	MYBPH	1	203144687	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6584	203144687	46105934	2181	10332											
PRELP	5549	broad.mit.edu	37	chr1	203452762	203452762	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgctggagaaactgccCggcctggtgttcctctacat	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203452762	A	A	203452762	2	1	9	1	0	0	0	0	0	0	0	1	12579	639	23	1		1	PRELP	1	203452762	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	308075	203452762	45797859	2182	10333											
OPTC	26254	broad.mit.edu	37	chr1	203468873	203468873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccaggacctcatcctccCagagaaccagttggaagctc	8	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203468873	A	A	203468873	3	1	9	1	0	0	0	0	1	0	0	0	10982	594	21	2	640	2	OPTC	1	203468873	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16111	203468873	45781748	2183	10334											
ATP2B4	493	broad.mit.edu	37	chr1	203667384	203667384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttcttagaattagtgtGggaagctcttcaagatgtca	10	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203667384	T	T	203667384	3	4	9	1	0	0	0	0	1	0	0	0	1146	1357	47	2	299	2	ATP2B4	1	203667384	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	198511	203667384	45583237	2184	10335											
ATP2B4	493	broad.mit.edu	37	chr1	203677153	203677153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccgtcaaatcccaagccCtgatgtcttcctgcccaaag	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203677153	A	A	203677153	3	1	9	1	0	0	0	0	1	0	0	0	1146	681	24	2	1512	2	ATP2B4	1	203677153	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9769	203677153	45573468	2185	10336											
ATP2B4	493	broad.mit.edu	37	chr1	203691728	203691728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaatgaaatcaactccCgaaagatccatggagagaag	8	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203691728	A	A	203691728	2	1	9	1	0	0	0	0	0	0	0	1	1146	644	23	1		1	ATP2B4	1	203691728	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14575	203691728	45558893	2186	10337											
ATP2B4	493	broad.mit.edu	37	chr1	203696691	203696691	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccggggcctgaaccgtatcCagactcaggtactctgatag	11	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203696691	G	G	203696691	3	3	9	1	0	0	0	0	1	0	0	0	1146	595	21	4	3375	4	ATP2B4	1	203696691	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4963	203696691	45553930	2187	10338											
LAX1	54900	broad.mit.edu	37	chr1	203740529	203740529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgagttaccgtcatgccCttgctgactttgccacaaac	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203740529	A	A	203740529	2	1	9	1	0	0	0	0	0	0	0	1	8720	668	24	2		2	LAX1	1	203740529	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43838	203740529	45510092	2188	10339											
ZC3H11A	9877	broad.mit.edu	37	chr1	203787711	203787711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacagggtgacagctgccCattccgtcactgtgaagctg	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203787711	A	A	203787711	3	1	9	1	0	0	0	0	1	0	0	0	17686	594	21	2	74	2	ZC3H11A	1	203787711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47182	203787711	45462910	2189	10340											
ZC3H11A	9877	broad.mit.edu	37	chr1	203787834	203787834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtaagttttttatttcCgttatcataataagtagtct	6	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203787834	A	A	203787834	1	1	9	0	1	0	0	0	0	0	0	0	17686	667	23	1		1	ZC3H11A	1	203787834	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	203787834	45462787	2190	10341											
ETNK2	55224	broad.mit.edu	37	chr1	204103847	204103847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagatgtggtggggtctcCctagcacaagctggggaaat	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204103847	A	A	204103847	1	1	9	0	1	0	0	0	0	0	0	0	5316	638	22	2		2	ETNK2	1	204103847	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	316013	204103847	45146774	2191	10342											
REN	5972	broad.mit.edu	37	chr1	204125236	204125236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatggcctcatttgcctGggggatttgtgagccgatac	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204125236	T	T	204125236	1	4	9	0	1	0	0	0	0	0	0	0	13332	1363	47	2		2	REN	1	204125236	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21389	204125236	45125385	2192	10343											
REN	5972	broad.mit.edu	37	chr1	204126410	204126410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgatgtgagttttgggcCggtggcgtgtgtaattctag	16	5	1	2	rs79234936	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204126410	A	A	204126410	1	1	9	0	1	0	0	0	0	0	0	0	13332	667	23	1		1	REN	1	204126410	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1174	204126410	45124211	2193	10344											
GOLT1A	127845	broad.mit.edu	37	chr1	204170925	204170925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgatgagggacaggccCgtcaggaacagcagctgtag	14	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204170925	A	A	204170925	2	1	9	1	0	0	0	0	0	0	0	1	6634	639	23	1		1	GOLT1A	1	204170925	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44515	204170925	45079696	2194	10345											
PLEKHA6	22874	broad.mit.edu	37	chr1	204218323	204218323	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctcaccttctcagctcGgagctgctgcaccagccggt	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204218323	T	T	204218323	2	4	9	1	0	0	0	0	0	0	0	1	12155	1124	39	1		1	PLEKHA6	1	204218323	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47398	204218323	45032298	2195	10346											
PLEKHA6	22874	broad.mit.edu	37	chr1	204234122	204234122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctgcactgcggctaccCggaagctcaggagggggatg	18	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204234122	A	A	204234122	3	1	9	1	0	0	0	0	1	0	0	0	12155	652	23	1	2885	1	PLEKHA6	1	204234122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15799	204234122	45016499	2196	10347											
PLEKHA6	22874	broad.mit.edu	37	chr1	204237354	204237354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtttgaagagccagccCgccttggtgacaggtgcatt	12	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204237354	A	A	204237354	2	1	9	1	0	0	0	0	0	0	0	1	12155	639	23	1		1	PLEKHA6	1	204237354	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3232	204237354	45013267	2197	10348											
PPP1R15B	84919	broad.mit.edu	37	chr1	204379538	204379538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcagtgttttggatcCatccggagaaggctgtgttc	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204379538	A	A	204379538	3	1	9	1	0	0	0	0	1	0	0	0	12465	594	21	2	1147	2	PPP1R15B	1	204379538	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	142184	204379538	44871083	2198	10349											
PIK3C2B	5287	broad.mit.edu	37	chr1	204401413	204401413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctcttgagagtgtgtgttCgggaggcaaaggagagggtc	18	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204401413	A	A	204401413	3	1	9	1	0	0	0	0	1	0	0	0	12005	884	31	3	862	3	PIK3C2B	1	204401413	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21875	204401413	44849208	2199	10350											
PIK3C2B	5287	broad.mit.edu	37	chr1	204401451	204401451	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagccggtcatctgagccCgtgaacttcatctgagccag	11	13	5	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204401451	A	A	204401451	2	1	9	1	0	0	0	0	0	0	0	1	12005	639	23	1		1	PIK3C2B	1	204401451	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	204401451	44849170	2200	10351											
PIK3C2B	5287	broad.mit.edu	37	chr1	204438112	204438112	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtcttgctcctggccacGggttttccagaggtgtcttt	11	10	2	1	rs144532668		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204438112	T	T	204438112	2	4	9	1	0	0	0	0	0	0	0	1	12005	1103	39	1		1	PIK3C2B	1	204438112	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36661	204438112	44812509	2201	10352											
PIK3C2B	5287	broad.mit.edu	37	chr1	204438314	204438314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttcctcttctaggatcCgatgctctagcagtttgccc	7	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204438314	A	A	204438314	3	1	9	1	0	0	0	0	1	0	0	0	12005	652	23	1	4415	1	PIK3C2B	1	204438314	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	202	204438314	44812307	2202	10353											
MDM4	4194	broad.mit.edu	37	chr1	204499931	204499931	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggacgtcagagcttctcCgtgaaagacccaaggtaaaa	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204499931	A	A	204499931	2	1	9	1	0	0	0	0	0	0	0	1	9507	639	23	1		1	MDM4	1	204499931	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	61617	204499931	44750690	2203	10354											
MDM4	4194	broad.mit.edu	37	chr1	204501901	204501901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttacgtgttgaagaaatGggtcatttgttctgtagaat	10	4	2	3	rs141298810	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204501901	T	T	204501901	1	4	9	0	1	0	0	0	0	0	0	0	9507	1363	47	2		2	MDM4	1	204501901	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1970	204501901	44748720	2204	10355											
LRRN2	10446	broad.mit.edu	37	chr1	204587055	204587055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcctccctggattccagGgcaggacgaggggagcagac	15	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204587055	T	T	204587055	3	4	9	1	0	0	0	0	1	0	0	0	9122	1232	43	2	79	2	LRRN2	1	204587055	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85154	204587055	44663566	2205	10356											
LRRN2	10446	broad.mit.edu	37	chr1	204587972	204587972	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagcggacacgggtgccCgtggcattggcccagcggat	16	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204587972	A	A	204587972	2	1	9	1	0	0	0	0	0	0	0	1	9122	639	23	1		1	LRRN2	1	204587972	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	917	204587972	44662649	2206	10357											
NFASC	23114	broad.mit.edu	37	chr1	204943867	204943867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggaaattaagatgatcCgcaaagaggaccagggcatc	12	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204943867	A	A	204943867	3	1	9	1	0	0	0	0	1	0	0	0	10454	652	23	1	1575	1	NFASC	1	204943867	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	355895	204943867	44306754	2207	10358											
CNTN2	6900	broad.mit.edu	37	chr1	205041261	205041261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgccacgaccatgaagcccCgtgagtctgtctgcctgggg	13	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205041261	A	A	205041261	3	1	9	1	0	0	0	0	1	0	0	0	3673	666	23	1	2805	1	CNTN2	1	205041261	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	97394	205041261	44209360	2208	10359											
RBBP5	5929	broad.mit.edu	37	chr1	205064087	205064087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccctttgtagagtttcGgtttaaatggagaatctttc	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205064087	T	T	205064087	3	4	9	1	0	0	0	0	1	0	0	0	13210	1116	39	1	122	1	RBBP5	1	205064087	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22826	205064087	44186534	2209	10360											
RBBP5	5929	broad.mit.edu	37	chr1	205068885	205068885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactacttgattctgtgccCagatagataccactccactg	6	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205068885	A	A	205068885	3	1	9	1	0	0	0	0	1	0	0	0	13210	595	21	2	678	2	RBBP5	1	205068885	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4798	205068885	44181736	2210	10361											
RBBP5	5929	broad.mit.edu	37	chr1	205069066	205069066	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaagaggagttctcctctCgtcccatggagaatcttcac	8	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205069066	A	A	205069066	2	1	9	1	0	0	0	0	0	0	0	1	13210	871	31	3		3	RBBP5	1	205069066	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	181	205069066	44181555	2211	10362											
RBBP5	5929	broad.mit.edu	37	chr1	205073003	205073003	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgccttttgcgtttccCgtataaatatattcccctcg	5	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205073003	A	A	205073003	2	1	9	1	0	0	0	0	0	0	0	1	13210	639	23	1		1	RBBP5	1	205073003	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3937	205073003	44177618	2212	10363											
DSTYK	25778	broad.mit.edu	37	chr1	205132076	205132076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttgctcccatagcatcCttgtaactgacgaccctgag	8	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205132076	A	A	205132076	3	1	9	1	0	0	0	0	1	0	0	0	4825	681	24	2	1209	2	DSTYK	1	205132076	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59073	205132076	44118545	2213	10364											
LEMD1	93273	broad.mit.edu	37	chr1	205350777	205350777	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggagcattgctttgctcCtaaattacttaaccaaacag	6	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205350777	A	A	205350777	1	1	9	0	1	0	0	0	0	0	0	0	8791	696	24	2		2	LEMD1	1	205350777	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	218701	205350777	43899844	2214	10365											
LEMD1	93273	broad.mit.edu	37	chr1	205350874	205350874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagcttcaagcccactGggaaaccttcttctctccag	7	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205350874	T	T	205350874	3	4	9	1	0	0	0	0	1	0	0	0	8791	1357	47	2	14	2	LEMD1	1	205350874	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97	205350874	43899747	2215	10366											
LEMD1	93273	broad.mit.edu	37	chr1	205388307	205388307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcataaatcatgctggacaaGgtattaataagtgcaaagtt	9	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205388307	T	T	205388307	1	4	9	0	1	0	0	0	0	0	0	0	8791	1015	35	2		2	LEMD1	1	205388307	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37433	205388307	43862314	2216	10367											
CDK18	5129	broad.mit.edu	37	chr1	205495447	205495447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccaagaaaagagggtatGgggacacatggggtcctagg	15	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205495447	T	T	205495447	1	4	9	0	1	0	0	0	0	0	0	0	3164	1363	47	2		2	CDK18	1	205495447	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	107140	205495447	43755174	2217	10368											
MFSD4	148808	broad.mit.edu	37	chr1	205568147	205568147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccatctcttggtgtgacGggcctcaacttagctgaaaa	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205568147	T	T	205568147	1	4	9	0	1	0	0	0	0	0	0	0	9626	1131	39	1		1	MFSD4	1	205568147	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	72700	205568147	43682474	2218	10369											
ELK4	2005	broad.mit.edu	37	chr1	205588946	205588946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctaattaagatgagaaatGgggtaactttcacatgacag	9	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205588946	T	T	205588946	1	4	9	0	1	0	0	0	0	0	0	0	5103	1363	47	2		2	ELK4	1	205588946	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20799	205588946	43661675	2219	10370											
NUCKS1	64710	broad.mit.edu	37	chr1	205687462	205687462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatccccagatttctcGggtggggggcttgtagatgt	13	10	2	2	rs147721587	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205687462	T	T	205687462	2	4	9	1	0	0	0	0	0	0	0	1	10815	1103	39	1		1	NUCKS1	1	205687462	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	98516	205687462	43563159	2220	10371											
NUCKS1	64710	broad.mit.edu	37	chr1	205687573	205687573	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaagctgtggggcgaccCactttccctttgcctttcac	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205687573	A	A	205687573	2	1	9	1	0	0	0	0	0	0	0	1	10815	581	21	2		2	NUCKS1	1	205687573	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	111	205687573	43563048	2221	10372											
NUCKS1	64710	broad.mit.edu	37	chr1	205698646	205698646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataataaaactatataagctGgtaacctccactggtcagtc	6	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205698646	T	T	205698646	1	4	9	0	1	0	0	0	0	0	0	0	10815	1363	47	2		2	NUCKS1	1	205698646	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11073	205698646	43551975	2222	10373											
RAB7L1	8934	broad.mit.edu	37	chr1	205740508	205740508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattttgccaacttaagaaGgggaaatggatgcccagaat	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205740508	T	T	205740508	1	4	9	0	1	0	0	0	0	0	0	0	13063	1015	35	2		2	RAB7L1	1	205740508	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41862	205740508	43510113	2223	10374											
RAB7L1	8934	broad.mit.edu	37	chr1	205740742	205740742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacacaggcagaggcatccCgataatacaatcgtgtcata	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205740742	A	A	205740742	3	1	9	1	0	0	0	0	1	0	0	0	13063	652	23	1	387	1	RAB7L1	1	205740742	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	234	205740742	43509879	2224	10375											
RAB7L1	8934	broad.mit.edu	37	chr1	205741635	205741635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactttacctgcaatatccCacagctgaagccgcactatc	5	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205741635	A	A	205741635	3	1	9	1	0	0	0	0	1	0	0	0	13063	595	21	2	442	2	RAB7L1	1	205741635	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	893	205741635	43508986	2225	10376											
SLC41A1	254428	broad.mit.edu	37	chr1	205779527	205779527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcagaagggccagtccCgttcagttggtggacgtcct	15	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205779527	A	A	205779527	3	1	9	1	0	0	0	0	1	0	0	0	14743	652	23	1	1538	1	SLC41A1	1	205779527	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37892	205779527	43471094	2226	10377											
SLC26A9	115019	broad.mit.edu	37	chr1	205884138	205884138	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttctgtttttggctcactCgtaaaagctggaagtcaagg	10	9	3	0	rs140760240	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205884138	A	A	205884138	1	1	9	0	1	0	0	0	0	0	0	0	14638	884	31	3		3	SLC26A9	1	205884138	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	104611	205884138	43366483	2227	10378											
SLC26A9	115019	broad.mit.edu	37	chr1	205884523	205884523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcgtgaaacatgctccCgaacatctcctgcaggaacc	8	15	2	1	rs140421441		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205884523	A	A	205884523	3	1	9	1	0	0	0	0	1	0	0	0	14638	652	23	1	337	1	SLC26A9	1	205884523	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	385	205884523	43366098	2228	10379											
SLC26A9	115019	broad.mit.edu	37	chr1	205886424	205886424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcacctgctctaagtccCagtagctgcgaatgtcctcc	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205886424	A	A	205886424	3	1	9	1	0	0	0	0	1	0	0	0	14638	595	21	2	364	2	SLC26A9	1	205886424	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1901	205886424	43364197	2229	10380											
SLC26A9	115019	broad.mit.edu	37	chr1	205892541	205892541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgtgatgattttaatcccCtggatatcctgggcctgtga	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205892541	A	A	205892541	3	1	9	1	0	0	0	0	1	0	0	0	14638	680	24	2	1118	2	SLC26A9	1	205892541	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6117	205892541	43358080	2230	10381											
SLC26A9	115019	broad.mit.edu	37	chr1	205896423	205896423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggctggccacctattcCgagaaagagttggggataga	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205896423	A	A	205896423	1	1	9	0	1	0	0	0	0	0	0	0	14638	667	23	1		1	SLC26A9	1	205896423	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3882	205896423	43354198	2231	10382											
SLC26A9	115019	broad.mit.edu	37	chr1	205899123	205899123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcggccgtcatgaagcccCggatgaaggactcggagagg	17	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205899123	A	A	205899123	3	1	9	1	0	0	0	0	1	0	0	0	14638	652	23	1	2121	1	SLC26A9	1	205899123	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2700	205899123	43351498	2232	10383											
SRGAP2	23380	broad.mit.edu	37	chr1	206567048	206567048	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtaagtgcttaaagccaAgggcctgagggcacctcttt	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206567048	G	G	206567048	1	3	9	0	1	0	0	0	0	0	0	0	15264	87	3	5		5	SRGAP2	1	206567048	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	667925	206567048	42683573	2233	10384											
SRGAP2	23380	broad.mit.edu	37	chr1	206610339	206610339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcatgaaggaattttccGggtgtcaggatcccaggtgg	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206610339	T	T	206610339	3	4	9	1	0	0	0	0	1	0	0	0	15264	1116	39	1	1366	1	SRGAP2	1	206610339	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43291	206610339	42640282	2234	10385											
IKBKE	9641	broad.mit.edu	37	chr1	206649579	206649579	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcatcgcgacatcaagccGgggaacatcatgcgcctcgt	12	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206649579	T	T	206649579	2	4	9	1	0	0	0	0	0	0	0	1	7682	1103	39	1		1	IKBKE	1	206649579	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39240	206649579	42601042	2235	10386											
LGTN	1939	broad.mit.edu	37	chr1	206769145	206769145	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacaatgggctcttgtccGggaagggtcacttgataggc	13	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206769145	T	T	206769145	2	4	9	1	0	0	0	0	0	0	0	1	8832	1103	39	1		1	LGTN	1	206769145	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	119566	206769145	42481476	2236	10387											
DYRK3	8444	broad.mit.edu	37	chr1	206821098	206821098	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggagttattggtggtccCaataatggagggtatgatga	14	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206821098	A	A	206821098	2	1	9	1	0	0	0	0	0	0	0	1	4897	581	21	2		2	DYRK3	1	206821098	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51953	206821098	42429523	2237	10388											
MAPKAPK2	9261	broad.mit.edu	37	chr1	206903432	206903432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccactccttgttatacacCgtactatgtgggtaagtcca	8	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206903432	A	A	206903432	3	1	9	1	0	0	0	0	1	0	0	0	9381	652	23	1	698	1	MAPKAPK2	1	206903432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82334	206903432	42347189	2238	10389											
MAPKAPK2	9261	broad.mit.edu	37	chr1	206906020	206906020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgctgctgaagaggcGgaagaaagctcgggccctgg	15	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206906020	T	T	206906020	3	4	9	1	0	0	0	0	1	0	0	0	9381	1116	39	1	1256	1	MAPKAPK2	1	206906020	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2588	206906020	42344601	2239	10390											
IL19	29949	broad.mit.edu	37	chr1	207013178	207013178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggcctctagtgtttccCtaatttgtgtttgtagccct	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207013178	A	A	207013178	1	1	9	0	1	0	0	0	0	0	0	0	7719	696	24	2		2	IL19	1	207013178	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	107158	207013178	42237443	2240	10391											
IL24	11009	broad.mit.edu	37	chr1	207074963	207074963	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctctactctggccaacaActttgttctcatcgtgtcac	5	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207074963	C	C	207074963	3	2	9	1	0	0	0	0	1	0	0	0	7747	43	2	5	445	5	IL24	1	207074963	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	61785	207074963	42175658	2241	10392											
IL24	11009	broad.mit.edu	37	chr1	207076354	207076354	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctctgaccaaagcccttGgggaagtggacattcttctg	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207076354	A	A	207076354	3	1	9	1	0	0	0	0	1	0	0	0	7747	1348	47	4	596	4	IL24	1	207076354	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1391	207076354	42174267	2242	10393											
FAIM3	9214	broad.mit.edu	37	chr1	207087297	207087297	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttggtggtggataccacGgtaccacatgttccagatcc	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207087297	T	T	207087297	2	4	9	1	0	0	0	0	0	0	0	1	5423	1103	39	1		1	FAIM3	1	207087297	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10943	207087297	42163324	2243	10394											
PIGR	5284	broad.mit.edu	37	chr1	207104857	207104857	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccctttttgccttcttGggttctttggtctctgtggt	9	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207104857	T	T	207104857	2	4	9	1	0	0	0	0	0	0	0	1	11992	1335	47	2		2	PIGR	1	207104857	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17560	207104857	42145764	2244	10395											
PIGR	5284	broad.mit.edu	37	chr1	207107967	207107967	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcagggcctggcagccCgtgttattccacttgcacca	12	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207107967	A	A	207107967	2	1	9	1	0	0	0	0	0	0	0	1	11992	639	23	1		1	PIGR	1	207107967	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3110	207107967	42142654	2245	10396											
C1orf116	79098	broad.mit.edu	37	chr1	207196214	207196214	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattaggtggcagcttccGgggcttaggggttgtgaggg	18	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207196214	T	T	207196214	2	4	9	1	0	0	0	0	0	0	0	1	2009	1115	39	1		1	C1orf116	1	207196214	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	88247	207196214	42054407	2246	10397											
PFKFB2	5208	broad.mit.edu	37	chr1	207236057	207236057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggaggccatgaagatcCgcaagtgagtcttgtttaag	13	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207236057	A	A	207236057	3	1	9	1	0	0	0	0	1	0	0	0	11856	652	23	1	314	1	PFKFB2	1	207236057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39843	207236057	42014564	2247	10398											
PFKFB2	5208	broad.mit.edu	37	chr1	207237135	207237135	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtattctttgtggaatcCgtctgtgatgatcctgatgt	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207237135	A	A	207237135	2	1	9	1	0	0	0	0	0	0	0	1	11856	639	23	1		1	PFKFB2	1	207237135	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1078	207237135	42013486	2248	10399											
PFKFB2	5208	broad.mit.edu	37	chr1	207242815	207242815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagattgagaaacggtaccCagaagagtttgcacttcgag	12	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207242815	A	A	207242815	3	1	9	1	0	0	0	0	1	0	0	0	11856	594	21	2	1072	2	PFKFB2	1	207242815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5680	207242815	42007806	2249	10400											
PFKFB2	5208	broad.mit.edu	37	chr1	207245573	207245573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttccccaagaaccaaaccCctgtaaggatgagaaggaac	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207245573	A	A	207245573	3	1	9	1	0	0	0	0	1	0	0	0	11856	623	22	2	1429	2	PFKFB2	1	207245573	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2758	207245573	42005048	2250	10401											
CD55	1604	broad.mit.edu	37	chr1	207497981	207497981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaattattttccagtcGgtactgttgtggaatatgag	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207497981	T	T	207497981	3	4	9	1	0	0	0	0	1	0	0	0	3054	1116	39	1	374	1	CD55	1	207497981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	252408	207497981	41752640	2251	10402											
CR2	1380	broad.mit.edu	37	chr1	207639870	207639870	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttccttttctacttttcaGggatttcttgtggctctcct	7	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207639870	T	T	207639870	5	4	9	1	0	0	0	0	0	0	1	0	3874	1014	35	2	64	2	CR2	1	207639870	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	141889	207639870	41610751	2252	10403											
CR2	1380	broad.mit.edu	37	chr1	207648381	207648381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacgatctcctcctgtgactCgctgccctaatccagaagtc	7	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207648381	A	A	207648381	3	1	9	1	0	0	0	0	1	0	0	0	3874	884	31	3	2590	3	CR2	1	207648381	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8511	207648381	41602240	2253	10404											
CR1	1378	broad.mit.edu	37	chr1	207741405	207741405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttagtgctcatttcccCacatccctaatgggttcaga	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207741405	A	A	207741405	1	1	9	0	1	0	0	0	0	0	0	0	3872	609	21	2		2	CR1	1	207741405	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	93024	207741405	41509216	2254	10405											
CR1	1378	broad.mit.edu	37	chr1	207748953	207748953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttaggcaccgactcattGgtcactcatctgctgaatgt	8	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207748953	T	T	207748953	3	4	9	1	0	0	0	0	1	0	0	0	3872	1348	47	2	4575	2	CR1	1	207748953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7548	207748953	41501668	2255	10406											
CR1	1378	broad.mit.edu	37	chr1	207785369	207785369	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttggggcaaaggtgtcCtttgtttgcgatgaagggtg	16	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207785369	A	A	207785369	2	1	9	1	0	0	0	0	0	0	0	1	3872	668	24	2		2	CR1	1	207785369	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36416	207785369	41465252	2256	10407											
CR1	1378	broad.mit.edu	37	chr1	207791614	207791614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttatttcttggtattcCttattcttgctgggttgtat	8	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207791614	A	A	207791614	1	1	9	0	1	0	0	0	0	0	0	0	3872	696	24	2		2	CR1	1	207791614	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6245	207791614	41459007	2257	10408											
CR1L	1379	broad.mit.edu	37	chr1	207825964	207825964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccctactatgagattgGggaacaagtagattataagt	9	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207825964	T	T	207825964	1	4	9	0	1	0	0	0	0	0	0	0	3873	1247	43	2		2	CR1L	1	207825964	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34350	207825964	41424657	2258	10409											
CR1L	1379	broad.mit.edu	37	chr1	207867876	207867876	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcaaagatgatcaagtGggcatctggagtggcccagc	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207867876	T	T	207867876	2	4	9	1	0	0	0	0	0	0	0	1	3873	1335	47	2		2	CR1L	1	207867876	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41912	207867876	41382745	2259	10410											
CR1L	1379	broad.mit.edu	37	chr1	207867954	207867954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtggaaaatggaatattGgtatctgacaacagaagctt	10	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207867954	T	T	207867954	3	4	9	1	0	0	0	0	1	0	0	0	3873	1339	47	2	738	2	CR1L	1	207867954	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78	207867954	41382667	2260	10411											
CR1L	1379	broad.mit.edu	37	chr1	207870945	207870945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttctacagctgtgagccCggctacgacctcagaggatc	12	12	2	2	rs142447304	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207870945	A	A	207870945	2	1	9	1	0	0	0	0	0	0	0	1	3873	639	23	1		1	CR1L	1	207870945	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2991	207870945	41379676	2261	10412											
CR1L	1379	broad.mit.edu	37	chr1	207871138	207871138	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcctgtgatgacttcctGggccaacttcctaatggcca	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207871138	T	T	207871138	2	4	9	1	0	0	0	0	0	0	0	1	3873	1335	47	2		2	CR1L	1	207871138	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	193	207871138	41379483	2262	10413											
CR1L	1379	broad.mit.edu	37	chr1	207881578	207881578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcgggcaatactgccCattggagcatgaagccacca	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207881578	A	A	207881578	3	1	9	1	0	0	0	0	1	0	0	0	3873	594	21	2	1422	2	CR1L	1	207881578	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10440	207881578	41369043	2263	10414											
CR1L	1379	broad.mit.edu	37	chr1	207884066	207884067	+	Intron	DNP	CC	GA	GA													ctttgtcatgaaaggaccccCcgcaccgtgtgcaatgccag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	207884067	GA	GA	207884066	1	3	9	0	1	0	0	0	0	0	0	0	3873	638	22	4		4	CR1L	1	207884066	Intron	DNP	CC	TCGA-05-4396-01A-21D-1855-08	2488	207884066	41366555	2264	10415											
CD46	4179	broad.mit.edu	37	chr1	207925579	207925579	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagcctcccggccgccgcGagtgtccctttccttcctgg	12	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207925579	T	T	207925579	4	4	9	1	0	0	0	0	0	1	0	0	3048	1059	37	3	24	3	CD46	1	207925579	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41513	207925579	41325042	2265	10416											
CD46	4179	broad.mit.edu	37	chr1	207956636	207956636	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttcttcttttttcctaGgatatcctaaacctgaggaa	5	8	2	1	rs140298514		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207956636	T	T	207956636	5	4	9	1	0	0	0	0	0	0	1	0	3048	1014	35	2	1026	2	CD46	1	207956636	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	31057	207956636	41293985	2266	10417											
CD34	947	broad.mit.edu	37	chr1	208062249	208062249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaagtggagcccagccCgctccagccctctgtgtgtg	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208062249	A	A	208062249	1	1	9	0	1	0	0	0	0	0	0	0	3036	667	23	1		1	CD34	1	208062249	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	105613	208062249	41188372	2267	10418											
CD34	947	broad.mit.edu	37	chr1	208073319	208073319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactctggggtagcagtacCgttgttgtcaagactcatga	11	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208073319	A	A	208073319	3	1	9	1	0	0	0	0	1	0	0	0	3036	652	23	1	1095	1	CD34	1	208073319	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11070	208073319	41177302	2268	10419											
PLXNA2	5362	broad.mit.edu	37	chr1	208201378	208201378	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactatacttgctgacataGgagtagatctcattgagggc	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208201378	T	T	208201378	2	4	9	1	0	0	0	0	0	0	0	1	12215	987	35	2		2	PLXNA2	1	208201378	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	128059	208201378	41049243	2269	10420											
PLXNA2	5362	broad.mit.edu	37	chr1	208201431	208201431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactccacggcgtgcaggcGggactgctcggcgaggtagg	18	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208201431	T	T	208201431	3	4	9	1	0	0	0	0	1	0	0	0	12215	1116	39	1	180	1	PLXNA2	1	208201431	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	208201431	41049190	2270	10421											
PLXNA2	5362	broad.mit.edu	37	chr1	208215699	208215699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctccacgtgctgctgccCgtttccttgtacctggggtg	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208215699	A	A	208215699	3	1	9	1	0	0	0	0	1	0	0	0	12215	652	23	1	1698	1	PLXNA2	1	208215699	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14268	208215699	41034922	2271	10422											
PLXNA2	5362	broad.mit.edu	37	chr1	208224391	208224391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgaatttgactcggatcCttggctcctgaatgacatcc	8	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208224391	A	A	208224391	3	1	9	1	0	0	0	0	1	0	0	0	12215	681	24	2	2530	2	PLXNA2	1	208224391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8692	208224391	41026230	2272	10423											
PLXNA2	5362	broad.mit.edu	37	chr1	208269331	208269331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggaagaaagcccataccCacatccagacccagagcaag	10	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208269331	A	A	208269331	1	1	9	0	1	0	0	0	0	0	0	0	12215	609	21	2		2	PLXNA2	1	208269331	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44940	208269331	40981290	2273	10424											
PLXNA2	5362	broad.mit.edu	37	chr1	208269409	208269409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtaaaacttgaactcGgtgctgacaaatatcttccc	7	10	1	2	rs138661063		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208269409	T	T	208269409	2	4	9	1	0	0	0	0	0	0	0	1	12215	1103	39	1		1	PLXNA2	1	208269409	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	78	208269409	40981212	2274	10425											
PLXNA2	5362	broad.mit.edu	37	chr1	208269428	208269428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgctgacaaatatcttcCctgtctccttggacctcagc	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208269428	A	A	208269428	3	1	9	1	0	0	0	0	1	0	0	0	12215	623	22	2	3856	2	PLXNA2	1	208269428	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	208269428	40981193	2275	10426											
PLXNA2	5362	broad.mit.edu	37	chr1	208390488	208390488	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacaccctcaggggtctcGggctggacagtgagaaagta	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208390488	T	T	208390488	2	4	9	1	0	0	0	0	0	0	0	1	12215	1103	39	1		1	PLXNA2	1	208390488	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	121060	208390488	40860133	2276	10427											
CAMK1G	57172	broad.mit.edu	37	chr1	209782358	209782358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccattctatgaagaaacGgagtctaagcttttcgagaa	8	10	2	3	rs147278175	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209782358	T	T	209782358	2	4	9	1	0	0	0	0	0	0	0	1	2624	1103	39	1		1	CAMK1G	1	209782358	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1391870	209782358	39468263	2277	10428											
LAMB3	3914	broad.mit.edu	37	chr1	209789737	209789737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctagctccaataagaacGggcttcagaagccttgggtt	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209789737	T	T	209789737	1	4	9	0	1	0	0	0	0	0	0	0	8684	1131	39	1		1	LAMB3	1	209789737	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7379	209789737	39460884	2278	10429											
LAMB3	3914	broad.mit.edu	37	chr1	209795829	209795829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcactgaacatgggaatgcGggacaggcaggactggaaca	15	8	0	1	rs116558839	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209795829	T	T	209795829	1	4	9	0	1	0	0	0	0	0	0	0	8684	1131	39	1		1	LAMB3	1	209795829	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6092	209795829	39454792	2279	10430											
LAMB3	3914	broad.mit.edu	37	chr1	209796309	209796309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctacctgtgcccacccCgcctcggctgcacttaccat	6	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209796309	A	A	209796309	1	1	9	0	1	0	0	0	0	0	0	0	8684	667	23	1		1	LAMB3	1	209796309	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	480	209796309	39454312	2280	10431											
HSD11B1	3290	broad.mit.edu	37	chr1	209879318	209879318	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctcgcagatatgtgtacCgtcacatgctcagatgtgtt	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209879318	A	A	209879318	1	1	9	0	1	0	0	0	0	0	0	0	7442	667	23	1		1	HSD11B1	1	209879318	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	83009	209879318	39371303	2281	10432											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209936786	209936786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctccatccacttaccccCgatcctccaggttaatctta	3	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209936786	A	A	209936786	1	1	9	0	1	0	0	0	0	0	0	0	16566	667	23	1		1	TRAF3IP3	1	209936786	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57468	209936786	39313835	2282	10433											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209953777	209953777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccttcctcagaggtgtGggcctcactgtcaccaagaa	12	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209953777	T	T	209953777	1	4	9	0	1	0	0	0	0	0	0	0	16566	1363	47	2		2	TRAF3IP3	1	209953777	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16991	209953777	39296844	2283	10434											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209953828	209953828	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttagatcaggctttgccCgtgtggagtccaaagtcctt	10	9	1	1	rs148709289		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209953828	A	A	209953828	2	1	9	1	0	0	0	0	0	0	0	1	16566	639	23	1		1	TRAF3IP3	1	209953828	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	209953828	39296793	2284	10435											
C1orf74	148304	broad.mit.edu	37	chr1	209956240	209956240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaagtcattctgagtcCtaaatcgggttctgaggtcc	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209956240	A	A	209956240	3	1	9	1	0	0	0	0	1	0	0	0	2080	681	24	2	73	2	C1orf74	1	209956240	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2412	209956240	39294381	2285	10436											
IRF6	3664	broad.mit.edu	37	chr1	209964096	209964096	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacctgctccaggctgacGggaccaaagagctcctcctg	11	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209964096	T	T	209964096	2	4	9	1	0	0	0	0	0	0	0	1	7904	1103	39	1		1	IRF6	1	209964096	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7856	209964096	39286525	2286	10437											
IRF6	3664	broad.mit.edu	37	chr1	209964203	209964203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccgtactccttcccacGgtactgaaacttgatgtcca	7	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209964203	T	T	209964203	3	4	9	1	0	0	0	0	1	0	0	0	7904	1116	39	1	718	1	IRF6	1	209964203	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107	209964203	39286418	2287	10438											
C1orf107	27042	broad.mit.edu	37	chr1	210015674	210015674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagacttttctcgagtgcGgatgtggagcctcaataatt	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210015674	T	T	210015674	3	4	9	1	0	0	0	0	1	0	0	0	2001	1116	39	1	1584	1	C1orf107	1	210015674	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51471	210015674	39234947	2288	10439											
SYT14	255928	broad.mit.edu	37	chr1	210273728	210273728	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaagattgtgggggaaaaGattttttatttaacaaaatt	9	1	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210273728	A	A	210273728	2	1	9	1	0	0	0	0	0	0	0	1	15589	933	33	4		4	SYT14	1	210273728	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	258054	210273728	38976893	2289	10440											
SERTAD4	56256	broad.mit.edu	37	chr1	210415109	210415109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcccaagagtggtttatGgctcaagactgcccttaccg	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210415109	T	T	210415109	3	4	9	1	0	0	0	0	1	0	0	0	14236	1348	47	2	508	2	SERTAD4	1	210415109	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	141381	210415109	38835512	2290	10441											
SERTAD4	56256	broad.mit.edu	37	chr1	210415128	210415128	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcaagactgcccttacCgaaaacgaccacggatggcc	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210415128	A	A	210415128	2	1	9	1	0	0	0	0	0	0	0	1	14236	644	23	1		1	SERTAD4	1	210415128	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	210415128	38835493	2291	10442											
HHAT	55733	broad.mit.edu	37	chr1	210796966	210796966	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaacctggtatttcttGggggcaatgaggttgggaaa	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210796966	T	T	210796966	3	4	9	1	0	0	0	0	1	0	0	0	7156	1348	47	2	1478	2	HHAT	1	210796966	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	381838	210796966	38453655	2292	10443											
KCNH1	3756	broad.mit.edu	37	chr1	210857004	210857004	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacgcttttgtcctctcGggaagtgtctccatcgactc	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210857004	T	T	210857004	2	4	9	1	0	0	0	0	0	0	0	1	8101	1103	39	1		1	KCNH1	1	210857004	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60038	210857004	38393617	2293	10444											
KCNH1	3756	broad.mit.edu	37	chr1	211032768	211032768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacctgatactcatcaacaGggttatcttcatcatcaatg	5	10	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211032768	T	T	211032768	1	4	9	0	1	0	0	0	0	0	0	0	8101	1015	35	2		2	KCNH1	1	211032768	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	175764	211032768	38217853	2294	10445											
KCNH1	3756	broad.mit.edu	37	chr1	211280740	211280740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaaaaaaaaaaaaaagGgaaaaaagggcacatgaggc	10	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211280740	T	T	211280740	1	4	9	0	1	0	0	0	0	0	0	0	8101	1247	43	2		2	KCNH1	1	211280740	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	247972	211280740	37969881	2295	10446											
TRAF5	7188	broad.mit.edu	37	chr1	211542924	211542924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaatggaagcttcctccCaaacatccaggtaagaaatg	7	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211542924	A	A	211542924	3	1	9	1	0	0	0	0	1	0	0	0	16568	594	21	2	950	2	TRAF5	1	211542924	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	262184	211542924	37707697	2296	10447											
SLC30A1	7779	broad.mit.edu	37	chr1	211748814	211748814	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagctttagtcctcctGggcttcttctctagattgtt	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211748814	T	T	211748814	2	4	9	1	0	0	0	0	0	0	0	1	14667	1335	47	2		2	SLC30A1	1	211748814	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	205890	211748814	37501807	2297	10448											
NEK2	4751	broad.mit.edu	37	chr1	211842412	211842412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagacacatcaaaataaccCacttggtagttctcctttgc	5	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211842412	A	A	211842412	1	1	9	0	1	0	0	0	0	0	0	0	10419	609	21	2		2	NEK2	1	211842412	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	93598	211842412	37408209	2298	10449											
NEK2	4751	broad.mit.edu	37	chr1	211843673	211843673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaattcatcagagtaacGgtatggaattcgcctgaatt	8	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211843673	T	T	211843673	3	4	9	1	0	0	0	0	1	0	0	0	10419	1116	39	1	638	1	NEK2	1	211843673	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1261	211843673	37406948	2299	10450											
NEK2	4751	broad.mit.edu	37	chr1	211843753	211843753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtaaatggaggcctaGggttaaaaaagaagaagaag	13	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211843753	T	T	211843753	1	4	9	0	1	0	0	0	0	0	0	0	10419	1015	35	2		2	NEK2	1	211843753	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	211843753	37406868	2300	10451											
NEK2	4751	broad.mit.edu	37	chr1	211846961	211846961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattggctggtttcagatccCgatgcaatacggtatgacca	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211846961	A	A	211846961	3	1	9	1	0	0	0	0	1	0	0	0	10419	652	23	1	942	1	NEK2	1	211846961	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3208	211846961	37403660	2301	10452											
LPGAT1	9926	broad.mit.edu	37	chr1	211923213	211923213	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagtctgaactcctacGgtgaccttgacaagtccacg	9	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211923213	T	T	211923213	1	4	9	0	1	0	0	0	0	0	0	0	9001	1131	39	1		1	LPGAT1	1	211923213	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	76252	211923213	37327408	2302	10453											
INTS7	25896	broad.mit.edu	37	chr1	212208784	212208784	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtttgacgccatgaccCgaatagttactcgactagcc	9	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212208784	A	A	212208784	1	1	9	0	1	0	0	0	0	0	0	0	7853	667	23	1		1	INTS7	1	212208784	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	285571	212208784	37041837	2303	10454											
DTL	51514	broad.mit.edu	37	chr1	212273604	212273604	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctttttcagtaacagtaacGagtagccagagtactcctgc	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212273604	T	T	212273604	2	4	9	1	0	0	0	0	0	0	0	1	4827	1045	37	3		3	DTL	1	212273604	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	64820	212273604	36977017	2304	10455											
PPP2R5A	5525	broad.mit.edu	37	chr1	212530626	212530626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaagaacactggaatcCgtaagtatcttttatatagg	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212530626	A	A	212530626	3	1	9	1	0	0	0	0	1	0	0	0	12493	666	23	1	1268	1	PPP2R5A	1	212530626	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	257022	212530626	36719995	2305	10456											
TMEM206	55248	broad.mit.edu	37	chr1	212583781	212583781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcacctggtaagatacccGgaccttggactctgaccgtc	9	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212583781	T	T	212583781	3	4	9	1	0	0	0	0	1	0	0	0	16254	1116	39	1	961	1	TMEM206	1	212583781	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53155	212583781	36666840	2306	10457											
FAM71A	149647	broad.mit.edu	37	chr1	212799967	212799967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacggttggttctatgacacCggacatcatggagacagtga	13	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212799967	A	A	212799967	3	1	9	1	0	0	0	0	1	0	0	0	5658	652	23	1	1750	1	FAM71A	1	212799967	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	216186	212799967	36450654	2307	10458											
FAM71A	149647	broad.mit.edu	37	chr1	212800058	212800058	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagctcatgggagtgtccCtggaaagcctattccagcgt	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212800058	A	A	212800058	1	1	9	0	1	0	0	0	0	0	0	0	5658	696	24	2		2	FAM71A	1	212800058	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	91	212800058	36450563	2308	10459											
BATF3	55509	broad.mit.edu	37	chr1	212860284	212860284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcttcccgatctctctcCgcagcatggtgttttcttgc	8	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212860284	A	A	212860284	3	1	9	1	0	0	0	0	1	0	0	0	1332	652	23	1	154	1	BATF3	1	212860284	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60226	212860284	36390337	2309	10460											
ANGEL2	90806	broad.mit.edu	37	chr1	213174185	213174185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacagttctgtgagatacCtaggtttgggggccaaattg	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213174185	A	A	213174185	3	1	9	1	0	0	0	0	1	0	0	0	609	681	24	2	446	2	ANGEL2	1	213174185	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	313901	213174185	36076436	2310	10461											
ANGEL2	90806	broad.mit.edu	37	chr1	213178772	213178772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaggtttccttcctgtcCgcatcttatattcacagtga	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213178772	A	A	213178772	3	1	9	1	0	0	0	0	1	0	0	0	609	652	23	1	917	1	ANGEL2	1	213178772	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4587	213178772	36071849	2311	10462											
ANGEL2	90806	broad.mit.edu	37	chr1	213188987	213188987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacacagtggccgtagccCttcctcacacagcgccaggc	9	18	1	0	rs144711506		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213188987	A	A	213188987	3	1	9	1	0	0	0	0	1	0	0	0	609	680	24	2	1643	2	ANGEL2	1	213188987	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10215	213188987	36061634	2312	10463											
PROX1	5629	broad.mit.edu	37	chr1	214171297	214171297	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctctctctgccaccacGggcttcaccacgtccacctt	6	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214171297	T	T	214171297	2	4	9	1	0	0	0	0	0	0	0	1	12666	1103	39	1		1	PROX1	1	214171297	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	982310	214171297	35079324	2313	10464											
SMYD2	56950	broad.mit.edu	37	chr1	214504259	214504259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgtggtttccatgggcGgtaacgccttgcccttgtgg	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214504259	T	T	214504259	1	4	9	0	1	0	0	0	0	0	0	0	14936	1131	39	1		1	SMYD2	1	214504259	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	332962	214504259	34746362	2314	10465											
SMYD2	56950	broad.mit.edu	37	chr1	214504273	214504273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggcggtaacgccttgccCttgtggacgtttccttcagg	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214504273	A	A	214504273	1	1	9	0	1	0	0	0	0	0	0	0	14936	696	24	2		2	SMYD2	1	214504273	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	214504273	34746348	2315	10466											
PTPN14	5784	broad.mit.edu	37	chr1	214537946	214537946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagtggaccacgatgggcGggtgccggttcttggtgcct	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214537946	T	T	214537946	3	4	9	1	0	0	0	0	1	0	0	0	12889	1116	39	1	227	1	PTPN14	1	214537946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33673	214537946	34712675	2316	10467											
PTPN14	5784	broad.mit.edu	37	chr1	214542999	214542999	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgctttgaacctagtttGggccagtatcggtggctttt	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214542999	T	T	214542999	2	4	9	1	0	0	0	0	0	0	0	1	12889	1335	47	2		2	PTPN14	1	214542999	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5053	214542999	34707622	2317	10468											
PTPN14	5784	broad.mit.edu	37	chr1	214551348	214551348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaactcgattctcttccCgccctgagactcgagccacc	6	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214551348	A	A	214551348	3	1	9	1	0	0	0	0	1	0	0	0	12889	652	23	1	945	1	PTPN14	1	214551348	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8349	214551348	34699273	2318	10469											
PTPN14	5784	broad.mit.edu	37	chr1	214557726	214557726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtaggggtgcctctccCgcatctccggttggctgtac	13	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214557726	A	A	214557726	3	1	9	1	0	0	0	0	1	0	0	0	12889	652	23	1	2119	1	PTPN14	1	214557726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6378	214557726	34692895	2319	10470											
PTPN14	5784	broad.mit.edu	37	chr1	214568317	214568317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttatgagtgatattcccCatgtcattccacctggttag	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214568317	A	A	214568317	3	1	9	1	0	0	0	0	1	0	0	0	12889	594	21	2	2836	2	PTPN14	1	214568317	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10591	214568317	34682304	2320	10471											
PTPN14	5784	broad.mit.edu	37	chr1	214574985	214574985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttccaaatgccagtacCggtctgagaaggttaaagcc	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214574985	A	A	214574985	1	1	9	0	1	0	0	0	0	0	0	0	12889	667	23	1		1	PTPN14	1	214574985	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6668	214574985	34675636	2321	10472											
CENPF	1063	broad.mit.edu	37	chr1	214787193	214787193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttgacaaactgaagaaGgaaaagcagcaaaggcagtt	11	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214787193	T	T	214787193	3	4	9	1	0	0	0	0	1	0	0	0	3261	991	35	2	98	2	CENPF	1	214787193	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	212208	214787193	34463428	2322	10473											
CENPF	1063	broad.mit.edu	37	chr1	214803886	214803886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttttcaggagctctccCgtcaacagcgttctttccaa	7	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214803886	A	A	214803886	3	1	9	1	0	0	0	0	1	0	0	0	3261	652	23	1	1234	1	CENPF	1	214803886	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16693	214803886	34446735	2323	10474											
CENPF	1063	broad.mit.edu	37	chr1	214819838	214819838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattgaaaagctgagagccCgcctagaagctgatgaaaag	12	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214819838	A	A	214819838	3	1	9	1	0	0	0	0	1	0	0	0	3261	652	23	1	6971	1	CENPF	1	214819838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15952	214819838	34430783	2324	10475											
CENPF	1063	broad.mit.edu	37	chr1	214830525	214830525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgttccaggaccatctcCaatcccttctgttactgaaa	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214830525	A	A	214830525	3	1	9	1	0	0	0	0	1	0	0	0	3261	594	21	2	8801	2	CENPF	1	214830525	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10687	214830525	34420096	2325	10476											
CENPF	1063	broad.mit.edu	37	chr1	214832270	214832270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaactcggaccagccccCgcctggctgcacagaagtta	11	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214832270	A	A	214832270	3	1	9	1	0	0	0	0	1	0	0	0	3261	652	23	1	9110	1	CENPF	1	214832270	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1745	214832270	34418351	2326	10477											
KCNK2	3776	broad.mit.edu	37	chr1	215298010	215298010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaatgcagggattatacCgttaggaaacacctccaatc	7	9	0	0	rs150182247	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215298010	A	A	215298010	3	1	9	1	0	0	0	0	1	0	0	0	8136	652	23	1	445	1	KCNK2	1	215298010	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	465740	215298010	33952611	2327	10478											
KCNK2	3776	broad.mit.edu	37	chr1	215368406	215368406	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgattggagattggctcCgagtgatatctaaaaagaca	11	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215368406	A	A	215368406	2	1	9	1	0	0	0	0	0	0	0	1	8136	644	23	1		1	KCNK2	1	215368406	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70396	215368406	33882215	2328	10479											
KCNK2	3776	broad.mit.edu	37	chr1	215408221	215408221	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacagccaacgtcacagcCgaattcaaagaaaccaggag	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215408221	A	A	215408221	2	1	9	1	0	0	0	0	0	0	0	1	8136	639	23	1		1	KCNK2	1	215408221	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39815	215408221	33842400	2329	10480											
KCTD3	51133	broad.mit.edu	37	chr1	215751285	215751285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactagagaaaataaaaatGgagtactgtttttctgtttg	9	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215751285	T	T	215751285	1	4	9	0	1	0	0	0	0	0	0	0	8180	1363	47	2		2	KCTD3	1	215751285	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	343064	215751285	33499336	2330	10481											
USH2A	7399	broad.mit.edu	37	chr1	215847751	215847751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagctatactccacacctGgggtgagagtaaaatcacga	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215847751	T	T	215847751	3	4	9	1	0	0	0	0	1	0	0	0	17162	1348	47	2	2146	2	USH2A	1	215847751	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96466	215847751	33402870	2331	10482											
USH2A	7399	broad.mit.edu	37	chr1	215853691	215853691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtgaatggttctaaccCgtacaggtgggcttgatggc	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215853691	A	A	215853691	3	1	9	1	0	0	0	0	1	0	0	0	17162	652	23	1	3558	1	USH2A	1	215853691	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5940	215853691	33396930	2332	10483											
USH2A	7399	broad.mit.edu	37	chr1	215963525	215963525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcattttactggcaccGggtcattctttttaatatgt	7	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215963525	T	T	215963525	3	4	9	1	0	0	0	0	1	0	0	0	17162	1116	39	1	5638	1	USH2A	1	215963525	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109834	215963525	33287096	2333	10484											
USH2A	7399	broad.mit.edu	37	chr1	216052410	216052410	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagctaagtatgtctcCgttctggatgagtgggggtt	13	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216052410	A	A	216052410	4	1	9	1	0	0	0	0	0	1	0	0	17162	661	23	1	7478	1	USH2A	1	216052410	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88885	216052410	33198211	2334	10485											
USH2A	7399	broad.mit.edu	37	chr1	216074107	216074107	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgctcactctagaaatcCatgggtggagtcgccagacc	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216074107	A	A	216074107	4	1	9	1	0	0	0	0	0	1	0	0	17162	603	21	2	8303	2	USH2A	1	216074107	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21697	216074107	33176514	2335	10486											
USH2A	7399	broad.mit.edu	37	chr1	216258077	216258077	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccctcatttaatgaagcGggacatccctcccagctgtt	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216258077	T	T	216258077	2	4	9	1	0	0	0	0	0	0	0	1	17162	1103	39	1		1	USH2A	1	216258077	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	183970	216258077	32992544	2336	10487											
USH2A	7399	broad.mit.edu	37	chr1	216420179	216420179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagagccatttattgtccCagtcttatcacagttgcaag	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216420179	A	A	216420179	3	1	9	1	0	0	0	0	1	0	0	0	17162	594	21	2	13305	2	USH2A	1	216420179	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	162102	216420179	32830442	2337	10488											
ESRRG	2104	broad.mit.edu	37	chr1	216824331	216824331	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttctttcagcatgccCacttttaaacacttcatgaa	3	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216824331	G	G	216824331	2	3	9	1	0	0	0	0	0	0	0	1	5304	581	21	4		4	ESRRG	1	216824331	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	404152	216824331	32426290	2338	10489											
GPATCH2	55105	broad.mit.edu	37	chr1	217604640	217604640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgacccaggcgtccagccCatattctgaagcattcggtt	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217604640	A	A	217604640	3	1	9	1	0	0	0	0	1	0	0	0	6656	594	21	2	156	2	GPATCH2	1	217604640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	780309	217604640	31645981	2339	10490											
GPATCH2	55105	broad.mit.edu	37	chr1	217671721	217671721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgctctgtcctagcccCagggctaaaccaatggctgc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217671721	A	A	217671721	3	1	9	1	0	0	0	0	1	0	0	0	6656	594	21	2	419	2	GPATCH2	1	217671721	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67081	217671721	31578900	2340	10491											
GPATCH2	55105	broad.mit.edu	37	chr1	217671732	217671732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctagccccagggctaaacCaatggctgcagaggaaagaa	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217671732	A	A	217671732	3	1	9	1	0	0	0	0	1	0	0	0	6656	595	21	2	430	2	GPATCH2	1	217671732	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	217671732	31578889	2341	10492											
GPATCH2	55105	broad.mit.edu	37	chr1	217783726	217783726	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacattccatgaaggcgactGagtctagcttggaaacctgt	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217783726	T	T	217783726	2	4	9	1	0	0	0	0	0	0	0	1	6656	1277	45	3		3	GPATCH2	1	217783726	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	111994	217783726	31466895	2342	10493											
GPATCH2	55105	broad.mit.edu	37	chr1	217793362	217793362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtggctgggtcattgtcCgtttgttagagatgtcctgt	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217793362	A	A	217793362	3	1	9	1	0	0	0	0	1	0	0	0	6656	652	23	1	1086	1	GPATCH2	1	217793362	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9636	217793362	31457259	2343	10494											
SPATA17	128153	broad.mit.edu	37	chr1	217842472	217842472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaaagtcaattgtgccCtgaattcgcttttaataaaa	6	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217842472	A	A	217842472	1	1	9	0	1	0	0	0	0	0	0	0	15118	696	24	2		2	SPATA17	1	217842472	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49110	217842472	31408149	2344	10495											
SPATA17	128153	broad.mit.edu	37	chr1	217856631	217856631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcgaggctatagggttcGgaagtacctctttaattatt	11	6	1	0	rs35503371		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217856631	T	T	217856631	3	4	9	1	0	0	0	0	1	0	0	0	15118	1116	39	1	341	1	SPATA17	1	217856631	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14159	217856631	31393990	2345	10496											
RRP15	51018	broad.mit.edu	37	chr1	218458717	218458717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaacctgaaaaagacccCaaagaagaagatgaaaatgg	9	6	0	7			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218458717	A	A	218458717	3	1	9	1	0	0	0	0	1	0	0	0	13798	594	21	2	61	2	RRP15	1	218458717	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	602086	218458717	30791904	2346	10497											
TGFB2	7042	broad.mit.edu	37	chr1	218578539	218578539	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcccactttctacagaccCtacttcagaattgttcgatt	5	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218578539	A	A	218578539	2	1	9	1	0	0	0	0	0	0	0	1	15941	668	24	2		2	TGFB2	1	218578539	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	119822	218578539	30672082	2347	10498											
TGFB2	7042	broad.mit.edu	37	chr1	218578634	218578634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctttcgtttgcagaaccCaaaagccagagtgcctgaac	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218578634	A	A	218578634	3	1	9	1	0	0	0	0	1	0	0	0	15941	594	21	2	564	2	TGFB2	1	218578634	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	218578634	30671987	2348	10499											
TGFB2	7042	broad.mit.edu	37	chr1	218607566	218607566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccataaaggttacaagcCactctctcttttcctcccaa	3	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218607566	A	A	218607566	1	1	9	0	1	0	0	0	0	0	0	0	15941	609	21	2		2	TGFB2	1	218607566	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28932	218607566	30643055	2349	10500											
TGFB2	7042	broad.mit.edu	37	chr1	218610485	218610485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtagtccagcaaatcacCaccacatacaacaccctatc	3	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218610485	A	A	218610485	1	1	9	0	1	0	0	0	0	0	0	0	15941	609	21	2		2	TGFB2	1	218610485	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2919	218610485	30640136	2350	10501											
LYPLAL1	127018	broad.mit.edu	37	chr1	219384913	219384913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagttagttcttcattcttGggcagaagagacaaactcaa	9	7	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219384913	T	T	219384913	3	4	9	1	0	0	0	0	1	0	0	0	9206	1357	47	2	575	2	LYPLAL1	1	219384913	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	774428	219384913	29865708	2351	10502											
LYPLAL1	127018	broad.mit.edu	37	chr1	219384931	219384931	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgggcagaagagacaaactCaatgttaaaatctctaggag	10	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219384931	A	A	219384931	4	1	9	1	0	0	0	0	0	1	0	0	9206	838	29	3	593	3	LYPLAL1	1	219384931	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	219384931	29865690	2352	10503											
SLC30A10	55532	broad.mit.edu	37	chr1	220088714	220088714	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagtctgggcctacaaccCagaaagctctttttgtgagc	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220088714	A	A	220088714	1	1	9	0	1	0	0	0	0	0	0	0	14668	609	21	2		2	SLC30A10	1	220088714	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	703783	220088714	29161907	2353	10504											
SLC30A10	55532	broad.mit.edu	37	chr1	220091665	220091665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcggtctccttgataagcGggaaggcagatgacaaaatg	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220091665	T	T	220091665	3	4	9	1	0	0	0	0	1	0	0	0	14668	1116	39	1	575	1	SLC30A10	1	220091665	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2951	220091665	29158956	2354	10505											
EPRS	2058	broad.mit.edu	37	chr1	220156660	220156660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagtccttgatggcttcCcaaatggcataggcccaggg	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220156660	A	A	220156660	3	1	9	1	0	0	0	0	1	0	0	0	5233	624	22	2	1411	2	EPRS	1	220156660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64995	220156660	29093961	2355	10506											
EPRS	2058	broad.mit.edu	37	chr1	220160556	220160556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctccttggtttttagaaGggtctttcctttggccatca	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220160556	T	T	220160556	3	4	9	1	0	0	0	0	1	0	0	0	5233	1000	35	2	1624	2	EPRS	1	220160556	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3896	220160556	29090065	2356	10507											
EPRS	2058	broad.mit.edu	37	chr1	220162047	220162047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttcagaatttctggttGggcttgaatccgaactttga	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220162047	T	T	220162047	3	4	9	1	0	0	0	0	1	0	0	0	5233	1348	47	2	1934	2	EPRS	1	220162047	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1491	220162047	29088574	2357	10508											
EPRS	2058	broad.mit.edu	37	chr1	220184292	220184292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgtaagagtgacctttGggtgtttggctacttctttc	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220184292	T	T	220184292	3	4	9	1	0	0	0	0	1	0	0	0	5233	1348	47	2	3017	2	EPRS	1	220184292	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22245	220184292	29066329	2358	10509											
EPRS	2058	broad.mit.edu	37	chr1	220184415	220184415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacctgcaacaaatacatcCtcatgttaaaacactgcgat	4	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220184415	A	A	220184415	1	1	9	0	1	0	0	0	0	0	0	0	5233	696	24	2		2	EPRS	1	220184415	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	220184415	29066206	2359	10510											
BPNT1	10380	broad.mit.edu	37	chr1	220233032	220233032	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaaacagactaacctccCacagcatgtaaaataacttc	3	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220233032	A	A	220233032	2	1	9	1	0	0	0	0	0	0	0	1	1503	581	21	2		2	BPNT1	1	220233032	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48617	220233032	29017589	2360	10511											
BPNT1	10380	broad.mit.edu	37	chr1	220242730	220242730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaagagatatcaaccttcGgtatattccttggttccatc	6	10	1	1	rs34136285	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220242730	T	T	220242730	2	4	9	1	0	0	0	0	0	0	0	1	1503	1103	39	1		1	BPNT1	1	220242730	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9698	220242730	29007891	2361	10512											
BPNT1	10380	broad.mit.edu	37	chr1	220247344	220247344	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagtttggggaatttccGggccaatgaagaacatatgc	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220247344	T	T	220247344	2	4	9	1	0	0	0	0	0	0	0	1	1503	1115	39	1		1	BPNT1	1	220247344	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4614	220247344	29003277	2362	10513											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220326613	220326613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcactaacttgaaggtgatGggctaaatccacagctagag	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220326613	T	T	220326613	3	4	9	1	0	0	0	0	1	0	0	0	13044	1348	47	2	412	2	RAB3GAP2	1	220326613	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	79269	220326613	28924008	2363	10514											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220364518	220364518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacaaggaattgagctactCgacttggaccctgagaattt	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220364518	A	A	220364518	3	1	9	1	0	0	0	0	1	0	0	0	13044	884	31	3	2890	3	RAB3GAP2	1	220364518	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37905	220364518	28886103	2364	10515											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220383745	220383745	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacctgctcagtcacgccGggatgtcgtggtatttcata	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220383745	T	T	220383745	2	4	9	1	0	0	0	0	0	0	0	1	13044	1103	39	1		1	RAB3GAP2	1	220383745	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19227	220383745	28866876	2365	10516											
MARK1	4139	broad.mit.edu	37	chr1	220777462	220777462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaaagagaaagaggccCgtgcaaaatttaggcaggta	13	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220777462	A	A	220777462	3	1	9	1	0	0	0	0	1	0	0	0	9404	652	23	1	500	1	MARK1	1	220777462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	393717	220777462	28473159	2366	10517											
MOSC1	64757	broad.mit.edu	37	chr1	220971269	220971269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgaggcgtcgctggcGgatctcaactccaggctaga	12	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220971269	T	T	220971269	2	4	9	1	0	0	0	0	0	0	0	1	9807	1103	39	1		1	MOSC1	1	220971269	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	193807	220971269	28279352	2367	10518											
DUSP10	11221	broad.mit.edu	37	chr1	221875785	221875785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccacgcccatcagctttGgtgtaaggattctcggtgtc	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221875785	T	T	221875785	3	4	9	1	0	0	0	0	1	0	0	0	4850	1348	47	2	34	2	DUSP10	1	221875785	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	904516	221875785	27374836	2368	10519											
DUSP10	11221	broad.mit.edu	37	chr1	221912318	221912318	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccttctctcttcagggactCgaggactatgtgaagtggct	12	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221912318	A	A	221912318	4	1	9	1	0	0	0	0	0	1	0	0	4850	893	31	3	691	3	DUSP10	1	221912318	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36533	221912318	27338303	2369	10520											
HHIPL2	79802	broad.mit.edu	37	chr1	222711962	222711962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatattaaaataaaaagaGggagaagggacatcagtcct	9	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222711962	T	T	222711962	1	4	9	0	1	0	0	0	0	0	0	0	7161	1015	35	2		2	HHIPL2	1	222711962	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	799644	222711962	26538659	2370	10521											
HHIPL2	79802	broad.mit.edu	37	chr1	222716773	222716773	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactcctttctcaacagttcGagtagtgctctaaaaccagt	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222716773	T	T	222716773	1	4	9	0	1	0	0	0	0	0	0	0	7161	1073	37	3		3	HHIPL2	1	222716773	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4811	222716773	26533848	2371	10522											
HHIPL2	79802	broad.mit.edu	37	chr1	222716838	222716838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctggttggcattatttcGgaacacagtacagctgtagg	12	8	0	0	rs76380116		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222716838	T	T	222716838	1	4	9	0	1	0	0	0	0	0	0	0	7161	1131	39	1		1	HHIPL2	1	222716838	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65	222716838	26533783	2372	10523											
TAF1A	9015	broad.mit.edu	37	chr1	222750877	222750877	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggttgattaatatttcccGggaagacgtattttcaccat	8	7	1	2	rs148113527	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222750877	T	T	222750877	2	4	9	1	0	0	0	0	0	0	0	1	15638	1115	39	1		1	TAF1A	1	222750877	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34039	222750877	26499744	2373	10524											
MIA3	375056	broad.mit.edu	37	chr1	222800922	222800922	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttcttacaggagacGgattttgtttgttttgatgg	10	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222800922	T	T	222800922	2	4	9	1	0	0	0	0	0	0	0	1	9658	1103	39	1		1	MIA3	1	222800922	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50045	222800922	26449699	2374	10525											
MIA3	375056	broad.mit.edu	37	chr1	222802182	222802182	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catatctcaaaaggaatgctCcacgaagaaaagcctggaga	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222802182	A	A	222802182	2	1	9	1	0	0	0	0	0	0	0	1	9658	842	30	3		3	MIA3	1	222802182	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1260	222802182	26448439	2375	10526											
MIA3	375056	broad.mit.edu	37	chr1	222806437	222806437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgtctatctttcctccCaattccagggccagttacaa	5	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222806437	A	A	222806437	1	1	9	0	1	0	0	0	0	0	0	0	9658	609	21	2		2	MIA3	1	222806437	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4255	222806437	26444184	2376	10527											
MIA3	375056	broad.mit.edu	37	chr1	222806470	222806470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttacaacagaagacactcCtatggatgctattgatgcaa	8	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222806470	A	A	222806470	3	1	9	1	0	0	0	0	1	0	0	0	9658	681	24	2	3378	2	MIA3	1	222806470	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	222806470	26444151	2377	10528											
MIA3	375056	broad.mit.edu	37	chr1	222822232	222822232	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttatttgtactagtccctCtgtattggtgtttgatatgg	10	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222822232	A	A	222822232	1	1	9	0	1	0	0	0	0	0	0	0	9658	928	32	3		3	MIA3	1	222822232	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15762	222822232	26428389	2378	10529											
MIA3	375056	broad.mit.edu	37	chr1	222835409	222835409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcaaggatcagtggacGggcctctacctcatcctcga	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222835409	T	T	222835409	3	4	9	1	0	0	0	0	1	0	0	0	9658	1116	39	1	5223	1	MIA3	1	222835409	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13177	222835409	26415212	2379	10530											
MIA3	375056	broad.mit.edu	37	chr1	222838735	222838735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctgcctctccaccctcGgggatttttacctggacacg	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222838735	T	T	222838735	3	4	9	1	0	0	0	0	1	0	0	0	9658	1116	39	1	5608	1	MIA3	1	222838735	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3326	222838735	26411886	2380	10531											
MIA3	375056	broad.mit.edu	37	chr1	222838786	222838786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctttaggttcacttggccCaagagagtactttattcctg	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222838786	A	A	222838786	3	1	9	1	0	0	0	0	1	0	0	0	9658	594	21	2	5659	2	MIA3	1	222838786	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	222838786	26411835	2381	10532											
MIA3	375056	broad.mit.edu	37	chr1	222838830	222838830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgattaccacccccaaccCatggtccccaggaataccca	5	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222838830	A	A	222838830	3	1	9	1	0	0	0	0	1	0	0	0	9658	594	21	2	5703	2	MIA3	1	222838830	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	222838830	26411791	2382	10533											
MIA3	375056	broad.mit.edu	37	chr1	222838957	222838957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggctttaaaacagagccCataaaactatgacctctgag	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222838957	A	A	222838957	3	1	9	1	0	0	0	0	1	0	0	0	9658	594	21	2	5830	2	MIA3	1	222838957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127	222838957	26411664	2383	10534											
AIDA	64853	broad.mit.edu	37	chr1	222867636	222867636	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaaaagctataaatacCagaattatcataactgttag	4	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222867636	A	A	222867636	1	1	9	0	1	0	0	0	0	0	0	0	423	609	21	2		2	AIDA	1	222867636	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28679	222867636	26382985	2384	10535											
DISP1	84976	broad.mit.edu	37	chr1	223176989	223176989	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctcactggagttatcCgagttccaggtgttccggtc	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223176989	A	A	223176989	2	1	9	1	0	0	0	0	0	0	0	1	4579	639	23	1		1	DISP1	1	223176989	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	309353	223176989	26073632	2385	10536											
DISP1	84976	broad.mit.edu	37	chr1	223177467	223177467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatttggatagcaaaaccCcagggccgaggtttgatatc	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223177467	A	A	223177467	3	1	9	1	0	0	0	0	1	0	0	0	4579	623	22	2	2754	2	DISP1	1	223177467	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	478	223177467	26073154	2386	10537											
SUSD4	55061	broad.mit.edu	37	chr1	223465898	223465898	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtcttggcagtgaaatcGggctacagagccttcaaaga	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223465898	T	T	223465898	2	4	9	1	0	0	0	0	0	0	0	1	15528	1124	39	1		1	SUSD4	1	223465898	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	288431	223465898	25784723	2387	10538											
C1orf65	164127	broad.mit.edu	37	chr1	223568360	223568360	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggcggatgagaagatcCgacaggccaggagtcacgtg	16	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223568360	A	A	223568360	2	1	9	1	0	0	0	0	0	0	0	1	2077	644	23	1		1	C1orf65	1	223568360	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	102462	223568360	25682261	2388	10539											
TP53BP2	7159	broad.mit.edu	37	chr1	223986194	223986194	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggagatagcagcactctCggctgctgccctgctggttt	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223986194	A	A	223986194	2	1	9	1	0	0	0	0	0	0	0	1	16508	871	31	3		3	TP53BP2	1	223986194	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	417834	223986194	25264427	2389	10540											
TP53BP2	7159	broad.mit.edu	37	chr1	223990966	223990966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttttggcaaacagctacGgtctacctgcagctccttat	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223990966	T	T	223990966	1	4	9	0	1	0	0	0	0	0	0	0	16508	1131	39	1		1	TP53BP2	1	223990966	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4772	223990966	25259655	2390	10541											
DEGS1	8560	broad.mit.edu	37	chr1	224377643	224377643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatattcctaccgattttgaGggctggttcttctgtaccgc	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224377643	T	T	224377643	3	4	9	1	0	0	0	0	1	0	0	0	4462	991	35	2	453	2	DEGS1	1	224377643	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	386677	224377643	24872978	2391	10542											
NVL	4931	broad.mit.edu	37	chr1	224437965	224437965	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagggggcggtaaaccCacaaacagtgttttgtccag	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224437965	A	A	224437965	2	1	9	1	0	0	0	0	0	0	0	1	10875	581	21	2		2	NVL	1	224437965	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60322	224437965	24812656	2392	10543											
NVL	4931	broad.mit.edu	37	chr1	224491524	224491524	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtggtggtacacctcCgggtgacgcatgtgtatgag	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224491524	A	A	224491524	2	1	9	1	0	0	0	0	0	0	0	1	10875	639	23	1		1	NVL	1	224491524	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53559	224491524	24759097	2393	10544											
NVL	4931	broad.mit.edu	37	chr1	224492828	224492828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattctttagcttgcctttcCgtttcatatcactctccaaa	3	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224492828	A	A	224492828	3	1	9	1	0	0	0	0	1	0	0	0	10875	652	23	1	1982	1	NVL	1	224492828	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1304	224492828	24757793	2394	10545											
NVL	4931	broad.mit.edu	37	chr1	224495892	224495892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctttgctccatctcaGgagtatttgaaacagaatca	6	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224495892	T	T	224495892	3	4	9	1	0	0	0	0	1	0	0	0	10875	1000	35	2	2226	2	NVL	1	224495892	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3064	224495892	24754729	2395	10546											
WDR26	80232	broad.mit.edu	37	chr1	224607247	224607247	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatccaatagtttagatcGggaagctgtccctttgcctt	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224607247	T	T	224607247	2	4	9	1	0	0	0	0	0	0	0	1	17410	1124	39	1		1	WDR26	1	224607247	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	111355	224607247	24643374	2396	10547											
CNIH3	149111	broad.mit.edu	37	chr1	224804826	224804826	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcctctagggaggcatcGggctcctaggggcttcttgg	16	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224804826	T	T	224804826	1	4	9	0	1	0	0	0	0	0	0	0	3636	1131	39	1		1	CNIH3	1	224804826	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	197579	224804826	24445795	2397	10548											
ENAH	55740	broad.mit.edu	37	chr1	225692753	225692753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttttccttggagaatccCgtctatgaaggggaaaacca	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225692753	A	A	225692753	3	1	9	1	0	0	0	0	1	0	0	0	5153	652	23	1	250	1	ENAH	1	225692753	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	887927	225692753	23557868	2398	10549											
ENAH	55740	broad.mit.edu	37	chr1	225700690	225700690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcacaccaatagcattcCctccacttgggaaagaggta	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225700690	A	A	225700690	3	1	9	1	0	0	0	0	1	0	0	0	5153	623	22	2	560	2	ENAH	1	225700690	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7937	225700690	23549931	2399	10550											
TMEM63A	9725	broad.mit.edu	37	chr1	226054854	226054854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcctcccaaaactatacGggtctttgtctgcagagaag	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226054854	T	T	226054854	3	4	9	1	0	0	0	0	1	0	0	0	16313	1116	39	1	1967	1	TMEM63A	1	226054854	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	354164	226054854	23195767	2400	10551											
LEFTY2	7044	broad.mit.edu	37	chr1	226127291	226127291	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagccgctctcgtggacGgacaccagcctgagacatga	11	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226127291	T	T	226127291	2	4	9	1	0	0	0	0	0	0	0	1	8788	1103	39	1		1	LEFTY2	1	226127291	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	72437	226127291	23123330	2401	10552											
C1orf55	163859	broad.mit.edu	37	chr1	226173094	226173094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaagagtcttgctgccCgctcctgcagagtgccccca	11	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226173094	A	A	226173094	3	1	9	1	0	0	0	0	1	0	0	0	2069	652	23	1	94	1	C1orf55	1	226173094	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45803	226173094	23077527	2402	10553											
C1orf55	163859	broad.mit.edu	37	chr1	226180157	226180157	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcactgctgctggtagtcGgggctggtgaagcagtgctt	17	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226180157	T	T	226180157	2	4	9	1	0	0	0	0	0	0	0	1	2069	1103	39	1		1	C1orf55	1	226180157	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7063	226180157	23070464	2403	10554											
C1orf55	163859	broad.mit.edu	37	chr1	226183012	226183012	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaactataaacagctcCatgctgcactgtgtcactgg	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226183012	A	A	226183012	4	1	9	1	0	0	0	0	0	1	0	0	2069	603	21	2	1186	2	C1orf55	1	226183012	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2855	226183012	23067609	2404	10555											
ACBD3	64746	broad.mit.edu	37	chr1	226346977	226346977	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgagaatttgctgctgttCgtagttccctggatactgtt	11	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226346977	A	A	226346977	4	1	9	1	0	0	0	0	0	1	0	0	123	893	31	3	791	3	ACBD3	1	226346977	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	163965	226346977	22903644	2405	10556											
ACBD3	64746	broad.mit.edu	37	chr1	226349289	226349289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctttcctcttcctccCgtcgaagcctttcctcttct	4	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226349289	A	A	226349289	3	1	9	1	0	0	0	0	1	0	0	0	123	652	23	1	935	1	ACBD3	1	226349289	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2312	226349289	22901332	2406	10557											
LIN9	286826	broad.mit.edu	37	chr1	226420777	226420777	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttcacattaaaatgattaGagtatacctaacgaattacc	4	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226420777	T	T	226420777	1	4	9	0	1	0	0	0	0	0	0	0	8886	957	33	3		3	LIN9	1	226420777	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	71488	226420777	22829844	2407	10558											
LIN9	286826	broad.mit.edu	37	chr1	226465520	226465520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaaaggaatttcatctGggagatctttgaattgtgaa	12	4	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226465520	T	T	226465520	3	4	9	1	0	0	0	0	1	0	0	0	8886	1348	47	2	1026	2	LIN9	1	226465520	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44743	226465520	22785101	2408	10559											
PARP1	142	broad.mit.edu	37	chr1	226564845	226564845	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggggtagaactttttGggatacttcgtgaaattttt	11	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226564845	T	T	226564845	2	4	9	1	0	0	0	0	0	0	0	1	11548	1335	47	2		2	PARP1	1	226564845	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99325	226564845	22685776	2409	10560											
PARP1	142	broad.mit.edu	37	chr1	226570718	226570718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaagcagctctaagaccGgggtcccaaatgctgtacct	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226570718	T	T	226570718	1	4	9	0	1	0	0	0	0	0	0	0	11548	1131	39	1		1	PARP1	1	226570718	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5873	226570718	22679903	2410	10561											
ITPKB	3707	broad.mit.edu	37	chr1	226829739	226829739	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctcggtgggggcctcGgggtccacctcgatcatctt	12	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226829739	T	T	226829739	2	4	9	1	0	0	0	0	0	0	0	1	7988	1103	39	1		1	ITPKB	1	226829739	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	259021	226829739	22420882	2411	10562											
ITPKB	3707	broad.mit.edu	37	chr1	226836356	226836356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccatgctgggaaagtctGggagagctgtgtctacctgc	14	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226836356	T	T	226836356	1	4	9	0	1	0	0	0	0	0	0	0	7988	1363	47	2		2	ITPKB	1	226836356	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6617	226836356	22414265	2412	10563											
ITPKB	3707	broad.mit.edu	37	chr1	226836462	226836462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgttttttatcttcctcCatgatttgctctagaaacaa	4	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226836462	A	A	226836462	3	1	9	1	0	0	0	0	1	0	0	0	7988	595	21	2	921	2	ITPKB	1	226836462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	226836462	22414159	2413	10564											
PSEN2	5664	broad.mit.edu	37	chr1	227076597	227076597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgactgtctggaacttcGgggcagtgggcatggtgtgc	17	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227076597	T	T	227076597	3	4	9	1	0	0	0	0	1	0	0	0	12757	1116	39	1	652	1	PSEN2	1	227076597	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	240135	227076597	22174024	2414	10565											
CDC42BPA	8476	broad.mit.edu	37	chr1	227192790	227192790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccactgaatactgtcCgactttcctgaggccgaggg	12	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227192790	A	A	227192790	3	1	9	1	0	0	0	0	1	0	0	0	3102	652	23	1	396	1	CDC42BPA	1	227192790	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116193	227192790	22057831	2415	10566											
CDC42BPA	8476	broad.mit.edu	37	chr1	227203784	227203784	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttaattcctcttaccatGggcagatctttcaggatctg	7	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227203784	T	T	227203784	2	4	9	1	0	0	0	0	0	0	0	1	3102	1335	47	2		2	CDC42BPA	1	227203784	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10994	227203784	22046837	2416	10567											
CDC42BPA	8476	broad.mit.edu	37	chr1	227204572	227204572	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaatatagtatcatcaccGagtagtccttgatggtacaa	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227204572	T	T	227204572	1	4	9	0	1	0	0	0	0	0	0	0	3102	1073	37	3		3	CDC42BPA	1	227204572	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	788	227204572	22046049	2417	10568											
CDC42BPA	8476	broad.mit.edu	37	chr1	227216602	227216602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatcctgactggaatccCacacagagttgttcactgaa	8	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227216602	A	A	227216602	2	1	9	1	0	0	0	0	0	0	0	1	3102	581	21	2		2	CDC42BPA	1	227216602	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12030	227216602	22034019	2418	10569											
CDC42BPA	8476	broad.mit.edu	37	chr1	227219038	227219038	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggttgttttaatgaggggtaGagtgctgtcataagcctctt	13	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227219038	T	T	227219038	3	4	9	1	0	0	0	0	1	0	0	0	3102	933	33	3	1568	3	CDC42BPA	1	227219038	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2436	227219038	22031583	2419	10570											
CDC42BPA	8476	broad.mit.edu	37	chr1	227239678	227239678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacatatgtgttctcaacGggatcagtctaggaaaataa	8	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227239678	T	T	227239678	1	4	9	0	1	0	0	0	0	0	0	0	3102	1131	39	1		1	CDC42BPA	1	227239678	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20640	227239678	22010943	2420	10571											
CDC42BPA	8476	broad.mit.edu	37	chr1	227300461	227300461	+	Silent	SNP	G	T	T													cacctcttcttccttatctcGgacatggcgagcaagtttct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227300461	T	T	227300461	2	4	9	1	0	0	0	0	0	0	0	1	3102	1124	39	1		1	CDC42BPA	1	227300461	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60783	227300461	21950160	2421	10572	62	2									
CDC42BPA	8476	broad.mit.edu	37	chr1	227300470	227300470	+	Missense_Mutation	SNP	G	T	T													ttccttatctcggacatggcGagcaagtttctgtttttggg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227300470	T	T	227300470	3	4	9	1	0	0	0	0	1	0	0	0	3102	1058	37	3	3463	3	CDC42BPA	1	227300470	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	227300470	21950151	2422	10573	62	2									
CDC42BPA	8476	broad.mit.edu	37	chr1	227300508	227300508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtgcaattctgttagcCgctcattgatctccatgaat	10	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227300508	A	A	227300508	3	1	9	1	0	0	0	0	1	0	0	0	3102	652	23	1	3501	1	CDC42BPA	1	227300508	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	227300508	21950113	2423	10574											
CDC42BPA	8476	broad.mit.edu	37	chr1	227348290	227348290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaccaaaatctgctaacCgaatatgtccattcatatcc	4	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227348290	A	A	227348290	3	1	9	1	0	0	0	0	1	0	0	0	3102	652	23	1	4636	1	CDC42BPA	1	227348290	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47782	227348290	21902331	2424	10575											
WNT9A	7483	broad.mit.edu	37	chr1	228111874	228111874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttgtggaagtccacacGggctcgcagatccttgcttg	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228111874	T	T	228111874	3	4	9	1	0	0	0	0	1	0	0	0	17525	1116	39	1	525	1	WNT9A	1	228111874	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	763584	228111874	21138747	2425	10576											
OBSCN	84033	broad.mit.edu	37	chr1	228432055	228432055	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaggtgcaggctgaggcGggggccagtgccatgctgag	19	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228432055	T	T	228432055	2	4	9	1	0	0	0	0	0	0	0	1	10907	1103	39	1		1	OBSCN	1	228432055	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	320181	228432055	20818566	2426	10577											
OBSCN	84033	broad.mit.edu	37	chr1	228437791	228437791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgacgtggtacaaggacGggaagaagctgagctccagc	16	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228437791	T	T	228437791	3	4	9	1	0	0	0	0	1	0	0	0	10907	1116	39	1	4209	1	OBSCN	1	228437791	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5736	228437791	20812830	2427	10578											
OBSCN	84033	broad.mit.edu	37	chr1	228465452	228465452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgagccgcctttgtcccCaggaaggacatacactctca	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228465452	A	A	228465452	1	1	9	0	1	0	0	0	0	0	0	0	10907	609	21	2		2	OBSCN	1	228465452	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	27661	228465452	20785169	2428	10579											
OBSCN	84033	broad.mit.edu	37	chr1	228467093	228467093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccaccatgaccgggccCgtgcacttcaccgttggcaa	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228467093	A	A	228467093	2	1	9	1	0	0	0	0	0	0	0	1	10907	639	23	1		1	OBSCN	1	228467093	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1641	228467093	20783528	2429	10580											
OBSCN	84033	broad.mit.edu	37	chr1	228492209	228492210	+	Intron	DNP	CG	AT	AT													ggcctgtctgtggcagatgcCggggagtactcgtgcgtgtg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	228492210	AT	AT	228492209	1	1	9	0	1	0	0	0	0	0	0	0	10907	667	23	1		1	OBSCN	1	228492209	Intron	DNP	CG	TCGA-05-4396-01A-21D-1855-08	25116	228492209	20758412	2430	10581											
TRIM11	81559	broad.mit.edu	37	chr1	228584934	228584934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctggagtcccctcccCgcccctggagcctcgccccg	10	22	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228584934	A	A	228584934	1	1	9	0	1	0	0	0	0	0	0	0	16611	667	23	1		1	TRIM11	1	228584934	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92725	228584934	20665687	2431	10582											
HIST3H2BB	128312	broad.mit.edu	37	chr1	228645983	228645983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgaagcaggtgcacccCgacaccggcatctcgtccaa	11	15	1	1	rs150937405		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228645983	A	A	228645983	2	1	9	1	0	0	0	0	0	0	0	1	7250	639	23	1		1	HIST3H2BB	1	228645983	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	61049	228645983	20604638	2432	10583											
HIST3H2BB	128312	broad.mit.edu	37	chr1	228646163	228646163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagctggccaagcacgcCgtgtccgagggcaccaaggc	16	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228646163	A	A	228646163	2	1	9	1	0	0	0	0	0	0	0	1	7250	639	23	1		1	HIST3H2BB	1	228646163	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	180	228646163	20604458	2433	10584											
C1orf96	126731	broad.mit.edu	37	chr1	229461085	229461085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacatccacagagtgagctCgctgcctttgagcaaccagt	9	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229461085	A	A	229461085	3	1	9	1	0	0	0	0	1	0	0	0	2095	884	31	3	106	3	C1orf96	1	229461085	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	814922	229461085	19789536	2434	10585											
C1orf96	126731	broad.mit.edu	37	chr1	229462683	229462683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgaggctcagtactggtGggtgatttgtcagtctctct	13	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229462683	T	T	229462683	2	4	9	1	0	0	0	0	0	0	0	1	2095	1335	47	2		2	C1orf96	1	229462683	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1598	229462683	19787938	2435	10586											
NUP133	55746	broad.mit.edu	37	chr1	229625784	229625784	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatcttctattgttatcagaGagtaatagatgagacatgga	9	4	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229625784	T	T	229625784	3	4	9	1	0	0	0	0	1	0	0	0	10849	942	33	3	2430	3	NUP133	1	229625784	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	163101	229625784	19624837	2436	10587											
NUP133	55746	broad.mit.edu	37	chr1	229631744	229631744	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catttactgatgtttgaactCgtcaggctataaaagcttga	8	7	1	3	rs147071617	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229631744	A	A	229631744	2	1	9	1	0	0	0	0	0	0	0	1	10849	871	31	3		3	NUP133	1	229631744	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5960	229631744	19618877	2437	10588											
ABCB10	23456	broad.mit.edu	37	chr1	229663026	229663026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacactgggtttagctgacGgatgtcatggccatcaagac	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229663026	T	T	229663026	3	4	9	1	0	0	0	0	1	0	0	0	41	1116	39	1	561	1	ABCB10	1	229663026	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31282	229663026	19587595	2438	10589											
URB2	9816	broad.mit.edu	37	chr1	229771588	229771588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccataccggcctggttcCgctgtctgaagactttgata	9	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229771588	A	A	229771588	3	1	9	1	0	0	0	0	1	0	0	0	17151	652	23	1	1238	1	URB2	1	229771588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108562	229771588	19479033	2439	10590											
URB2	9816	broad.mit.edu	37	chr1	229772567	229772567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtggactcacataccCtgtagcacactggcacttga	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229772567	A	A	229772567	3	1	9	1	0	0	0	0	1	0	0	0	17151	681	24	2	2217	2	URB2	1	229772567	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	979	229772567	19478054	2440	10591											
URB2	9816	broad.mit.edu	37	chr1	229772943	229772943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatttgcaaaagctggaccCgaaggtatagaacctagagg	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229772943	A	A	229772943	2	1	9	1	0	0	0	0	0	0	0	1	17151	639	23	1		1	URB2	1	229772943	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	376	229772943	19477678	2441	10592											
URB2	9816	broad.mit.edu	37	chr1	229773045	229773045	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagttggaaagcatcctGgggcttttggaagtgatttc	14	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229773045	T	T	229773045	2	4	9	1	0	0	0	0	0	0	0	1	17151	1335	47	2		2	URB2	1	229773045	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	102	229773045	19477576	2442	10593											
URB2	9816	broad.mit.edu	37	chr1	229773135	229773135	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgttactgtccatggcCgtcaccaaactaggatgctc	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229773135	A	A	229773135	2	1	9	1	0	0	0	0	0	0	0	1	17151	639	23	1		1	URB2	1	229773135	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	229773135	19477486	2443	10594											
GALNT2	2590	broad.mit.edu	37	chr1	230381819	230381819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattttaggacaggactcGggttgtgtcacccatcatcg	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230381819	T	T	230381819	3	4	9	1	0	0	0	0	1	0	0	0	6275	1116	39	1	770	1	GALNT2	1	230381819	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	608684	230381819	18868802	2444	10595											
GALNT2	2590	broad.mit.edu	37	chr1	230400934	230400934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaaggggctggtggacGggagctggtggtcatgtgca	20	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230400934	T	T	230400934	1	4	9	0	1	0	0	0	0	0	0	0	6275	1131	39	1		1	GALNT2	1	230400934	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19115	230400934	18849687	2445	10596											
GALNT2	2590	broad.mit.edu	37	chr1	230410290	230410290	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttataaagctgcagggctgcCgagaaaatgacagcagacag	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230410290	A	A	230410290	2	1	9	1	0	0	0	0	0	0	0	1	6275	644	23	1		1	GALNT2	1	230410290	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9356	230410290	18840331	2446	10597											
GALNT2	2590	broad.mit.edu	37	chr1	230410329	230410329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtacggcttgcaggcaccCgtgggtgcccgtgattaacc	14	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230410329	A	A	230410329	1	1	9	0	1	0	0	0	0	0	0	0	6275	667	23	1		1	GALNT2	1	230410329	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	230410329	18840292	2447	10598											
PGBD5	79605	broad.mit.edu	37	chr1	230459428	230459428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacccggagatgcatccCaaaggccccccctcaccaca	8	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230459428	A	A	230459428	1	1	9	0	1	0	0	0	0	0	0	0	11879	609	21	2		2	PGBD5	1	230459428	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49099	230459428	18791193	2448	10599											
COG2	22796	broad.mit.edu	37	chr1	230814822	230814822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatctattcaccgccccCgccccgcacccttctaaaac	5	20	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230814822	A	A	230814822	1	1	9	0	1	0	0	0	0	0	0	0	3690	667	23	1		1	COG2	1	230814822	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	355394	230814822	18435799	2449	10600											
CAPN9	10753	broad.mit.edu	37	chr1	230916453	230916453	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaaaaaagccattaccCggtgagtcagaggaacagct	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230916453	A	A	230916453	2	1	9	1	0	0	0	0	0	0	0	1	2658	666	23	1		1	CAPN9	1	230916453	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	101631	230916453	18334168	2450	10601											
CAPN9	10753	broad.mit.edu	37	chr1	230921653	230921653	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaccttcccaggctctGggctcttcagctctgcagat	9	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230921653	T	T	230921653	1	4	9	0	1	0	0	0	0	0	0	0	2658	1363	47	2		2	CAPN9	1	230921653	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5200	230921653	18328968	2451	10602											
CAPN9	10753	broad.mit.edu	37	chr1	230921727	230921727	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttttctgcccctacagGgatatggatggaaatgtaga	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230921727	T	T	230921727	2	4	9	1	0	0	0	0	0	0	0	1	2658	1246	43	2		2	CAPN9	1	230921727	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	74	230921727	18328894	2452	10603											
CAPN9	10753	broad.mit.edu	37	chr1	230921759	230921759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtagacattgaccttcCtgaggtgagtcttctgatgt	10	7	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230921759	A	A	230921759	3	1	9	1	0	0	0	0	1	0	0	0	2658	681	24	2	1560	2	CAPN9	1	230921759	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	230921759	18328862	2453	10604											
TTC13	79573	broad.mit.edu	37	chr1	231044742	231044742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttgccatcagtgctccCacgatgaccgagtaagcaat	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231044742	A	A	231044742	2	1	9	1	0	0	0	0	0	0	0	1	16806	581	21	2		2	TTC13	1	231044742	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	122983	231044742	18205879	2454	10605											
TTC13	79573	broad.mit.edu	37	chr1	231044805	231044805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcaatccatcctggacGgtctacagttaccatgttaa	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231044805	T	T	231044805	1	4	9	0	1	0	0	0	0	0	0	0	16806	1131	39	1		1	TTC13	1	231044805	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	231044805	18205816	2455	10606											
TTC13	79573	broad.mit.edu	37	chr1	231056308	231056308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccttttccagggcttccCgaacttccagcaatccttta	6	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231056308	A	A	231056308	3	1	9	1	0	0	0	0	1	0	0	0	16806	652	23	1	679	1	TTC13	1	231056308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11503	231056308	18194313	2456	10607											
TTC13	79573	broad.mit.edu	37	chr1	231059658	231059658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgatctaaccacagcacGggctggtctgggtcagcaat	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231059658	T	T	231059658	2	4	9	1	0	0	0	0	0	0	0	1	16806	1103	39	1		1	TTC13	1	231059658	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3350	231059658	18190963	2457	10608											
TTC13	79573	broad.mit.edu	37	chr1	231067537	231067537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtagagcatcattcccCggagctggagggtttgcaca	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231067537	A	A	231067537	3	1	9	1	0	0	0	0	1	0	0	0	16806	652	23	1	1568	1	TTC13	1	231067537	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7879	231067537	18183084	2458	10609											
TTC13	79573	broad.mit.edu	37	chr1	231081143	231081143	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatactcacatgtagtcCcttctttccataggctatcc	4	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231081143	A	A	231081143	4	1	9	1	0	0	0	0	0	1	0	0	16806	632	22	2	2087	2	TTC13	1	231081143	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13606	231081143	18169478	2459	10610											
TRIM67	440730	broad.mit.edu	37	chr1	231334859	231334859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccttgtggatgctttaactCgtcagaaagccaagctgctc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231334859	A	A	231334859	3	1	9	1	0	0	0	0	1	0	0	0	16665	884	31	3	1217	3	TRIM67	1	231334859	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	253716	231334859	17915762	2460	10611											
TRIM67	440730	broad.mit.edu	37	chr1	231342497	231342497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaactcttctggtgtcGggccttacagtaaaactgtc	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231342497	T	T	231342497	3	4	9	1	0	0	0	0	1	0	0	0	16665	1116	39	1	1806	1	TRIM67	1	231342497	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7638	231342497	17908124	2461	10612											
C1orf131	128061	broad.mit.edu	37	chr1	231362599	231362599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaacaaagaaacaaacCatcatattttattctgcaaa	4	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231362599	A	A	231362599	1	1	9	0	1	0	0	0	0	0	0	0	2018	609	21	2		2	C1orf131	1	231362599	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20102	231362599	17888022	2462	10613											
GNPAT	8443	broad.mit.edu	37	chr1	231396261	231396261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccttttagctttccaaGgaatcccttcaatctgtgga	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231396261	T	T	231396261	3	4	9	1	0	0	0	0	1	0	0	0	6605	991	35	2	280	2	GNPAT	1	231396261	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33662	231396261	17854360	2463	10614											
GNPAT	8443	broad.mit.edu	37	chr1	231396290	231396290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaatctgtggatgtcctccGagaggaagtgagtgagatct	13	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231396290	T	T	231396290	3	4	9	1	0	0	0	0	1	0	0	0	6605	1058	37	3	309	3	GNPAT	1	231396290	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29	231396290	17854331	2464	10615											
GNPAT	8443	broad.mit.edu	37	chr1	231408019	231408019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcccttaaagtttaaaGggcaatgttgtaattttaca	7	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231408019	T	T	231408019	1	4	9	0	1	0	0	0	0	0	0	0	6605	1015	35	2		2	GNPAT	1	231408019	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11729	231408019	17842602	2465	10616											
TSNAX	7257	broad.mit.edu	37	chr1	231700377	231700377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaactggagaattgatgcGgatgtgtattaacagtgtgg	13	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231700377	T	T	231700377	3	4	9	1	0	0	0	0	1	0	0	0	16756	1116	39	1	621	1	TSNAX	1	231700377	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	292358	231700377	17550244	2466	10617											
DISC1	27185	broad.mit.edu	37	chr1	231885662	231885662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctctctcatcattttGggtttccagctgagacgtta	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231885662	T	T	231885662	1	4	9	0	1	0	0	0	0	0	0	0	4578	1363	47	2		2	DISC1	1	231885662	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	185285	231885662	17364959	2467	10618											
SIPA1L2	57568	broad.mit.edu	37	chr1	232600949	232600949	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaggtatccacggtggcGgttgtgacaaagttctccgc	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232600949	T	T	232600949	2	4	9	1	0	0	0	0	0	0	0	1	14443	1103	39	1		1	SIPA1L2	1	232600949	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	715287	232600949	16649672	2468	10619											
SIPA1L2	57568	broad.mit.edu	37	chr1	232600967	232600967	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggttgtgacaaagttctcCgccagatctttcaagtactc	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232600967	A	A	232600967	2	1	9	1	0	0	0	0	0	0	0	1	14443	639	23	1		1	SIPA1L2	1	232600967	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	232600967	16649654	2469	10620											
SIPA1L2	57568	broad.mit.edu	37	chr1	232601084	232601084	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggaagtcccggaacacGgctgactttggaaaagttac	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232601084	T	T	232601084	2	4	9	1	0	0	0	0	0	0	0	1	14443	1103	39	1		1	SIPA1L2	1	232601084	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	117	232601084	16649537	2470	10621											
SIPA1L2	57568	broad.mit.edu	37	chr1	232607186	232607186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatgctgaaagtgagacCggatgctttttggagtaaaa	12	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232607186	A	A	232607186	3	1	9	1	0	0	0	0	1	0	0	0	14443	652	23	1	3058	1	SIPA1L2	1	232607186	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6102	232607186	16643435	2471	10622											
SIPA1L2	57568	broad.mit.edu	37	chr1	232629245	232629245	+	Intron	SNP	C	A	A													aggaggtttagactttagccCaataactacggcaagcagcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232629245	A	A	232629245	1	1	9	0	1	0	0	0	0	0	0	0	14443	609	21	2		2	SIPA1L2	1	232629245	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22059	232629245	16621376	2472	10623	63	2									
SIPA1L2	57568	broad.mit.edu	37	chr1	232629255	232629255	+	Intron	SNP	G	T	T													gactttagcccaataactacGgcaagcagccccattacctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232629255	T	T	232629255	1	4	9	0	1	0	0	0	0	0	0	0	14443	1131	39	1		1	SIPA1L2	1	232629255	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	232629255	16621366	2473	10624	63	2									
SIPA1L2	57568	broad.mit.edu	37	chr1	232629267	232629267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataactacggcaagcagcccCattacctcacttgtcctgaa	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232629267	A	A	232629267	1	1	9	0	1	0	0	0	0	0	0	0	14443	609	21	2		2	SIPA1L2	1	232629267	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	232629267	16621354	2474	10625											
SIPA1L2	57568	broad.mit.edu	37	chr1	232649718	232649718	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgggcacttccaagacGgagacacctgcatttgtgca	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232649718	T	T	232649718	2	4	9	1	0	0	0	0	0	0	0	1	14443	1103	39	1		1	SIPA1L2	1	232649718	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20451	232649718	16600903	2475	10626											
C1orf57	84284	broad.mit.edu	37	chr1	233105767	233105767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcagacgctgtctacccCagggactataatccttggca	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233105767	A	A	233105767	3	1	9	1	0	0	0	0	1	0	0	0	2071	594	21	2	421	2	C1orf57	1	233105767	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	456049	233105767	16144854	2476	10627											
PCNXL2	80003	broad.mit.edu	37	chr1	233344278	233344278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacctattaagtagtccCtagctgattgtagaaacact	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233344278	A	A	233344278	3	1	9	1	0	0	0	0	1	0	0	0	11686	681	24	2	3652	2	PCNXL2	1	233344278	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	238511	233344278	15906343	2477	10628											
PCNXL2	80003	broad.mit.edu	37	chr1	233362972	233362972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcatgctcagtggcttacCgatcaagtaatgccagcaag	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233362972	A	A	233362972	3	1	9	1	0	0	0	0	1	0	0	0	11686	666	23	1	4009	1	PCNXL2	1	233362972	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18694	233362972	15887649	2478	10629											
PCNXL2	80003	broad.mit.edu	37	chr1	233388419	233388419	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaggctgagtgcatgcGgggccggtgctagtatggtc	18	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233388419	T	T	233388419	2	4	9	1	0	0	0	0	0	0	0	1	11686	1103	39	1		1	PCNXL2	1	233388419	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25447	233388419	15862202	2479	10630											
PCNXL2	80003	broad.mit.edu	37	chr1	233394270	233394270	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcacttccattgccttcGggacagggaacacctcctcc	7	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233394270	T	T	233394270	2	4	9	1	0	0	0	0	0	0	0	1	11686	1103	39	1		1	PCNXL2	1	233394270	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5851	233394270	15856351	2480	10631											
PCNXL2	80003	broad.mit.edu	37	chr1	233397918	233397918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcctattattgctaaccCaacatgagaaacacaagagc	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233397918	A	A	233397918	1	1	9	0	1	0	0	0	0	0	0	0	11686	609	21	2		2	PCNXL2	1	233397918	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3648	233397918	15852703	2481	10632											
SLC35F3	148641	broad.mit.edu	37	chr1	234367424	234367424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaactttttattcttccCgttgtactacgtggggcacg	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234367424	A	A	234367424	3	1	9	1	0	0	0	0	1	0	0	0	14704	652	23	1	555	1	SLC35F3	1	234367424	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	969506	234367424	14883197	2482	10633											
SLC35F3	148641	broad.mit.edu	37	chr1	234452306	234452306	+	Intron	SNP	C	A	A													ttgcatactccctctgactcCgtcccgacttccctgaccag					rs138332708	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234452306	A	A	234452306	1	1	9	0	1	0	0	0	0	0	0	0	14704	667	23	1		1	SLC35F3	1	234452306	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	84882	234452306	14798315	2483	10634	64	2									
SLC35F3	148641	broad.mit.edu	37	chr1	234452311	234452311	+	Intron	SNP	C	A	A													tactccctctgactccgtccCgacttccctgaccagcattt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234452311	A	A	234452311	1	1	9	0	1	0	0	0	0	0	0	0	14704	667	23	1		1	SLC35F3	1	234452311	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5	234452311	14798310	2484	10635	64	2									
C1orf31	388753	broad.mit.edu	37	chr1	234509415	234509415	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaagccggacgtgggcGggcagagaggtcggcttgct	19	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234509415	T	T	234509415	1	4	9	0	1	0	0	0	0	0	0	0	2059	1131	39	1		1	C1orf31	1	234509415	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	57104	234509415	14741206	2485	10636											
C1orf31	388753	broad.mit.edu	37	chr1	234509493	234509493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggtcccttactgtcccCgagccgcgggttcctcttgt	13	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234509493	A	A	234509493	3	1	9	1	0	0	0	0	1	0	0	0	2059	652	23	1	31	1	C1orf31	1	234509493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	234509493	14741128	2486	10637											
TARBP1	6894	broad.mit.edu	37	chr1	234529406	234529406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttacctcctaaattggtcGgtttgtcgatgagcgaggcc	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234529406	T	T	234529406	3	4	9	1	0	0	0	0	1	0	0	0	15674	1116	39	1	460	1	TARBP1	1	234529406	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19913	234529406	14721215	2487	10638											
TARBP1	6894	broad.mit.edu	37	chr1	234565804	234565804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtgacaacaacagaaatGgatttttaagccttaacctt	7	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234565804	T	T	234565804	1	4	9	0	1	0	0	0	0	0	0	0	15674	1363	47	2		2	TARBP1	1	234565804	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36398	234565804	14684817	2488	10639											
TARBP1	6894	broad.mit.edu	37	chr1	234565844	234565844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgtacctgctgcactcCaaggggtgagcataactgct	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234565844	A	A	234565844	3	1	9	1	0	0	0	0	1	0	0	0	15674	593	21	2	2331	2	TARBP1	1	234565844	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	234565844	14684777	2489	10640											
TARBP1	6894	broad.mit.edu	37	chr1	234582555	234582555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttatcctcaccatcttGggcactggaacctttcaacc	5	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234582555	T	T	234582555	3	4	9	1	0	0	0	0	1	0	0	0	15674	1357	47	2	2813	2	TARBP1	1	234582555	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16711	234582555	14668066	2490	10641											
TOMM20	9804	broad.mit.edu	37	chr1	235291903	235291903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaggggagagaggaccCactcacgttctcgaagcctg	14	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235291903	A	A	235291903	1	1	9	0	1	0	0	0	0	0	0	0	16477	609	21	2		2	TOMM20	1	235291903	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	709348	235291903	13958718	2491	10642											
ARID4B	51742	broad.mit.edu	37	chr1	235338608	235338608	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagactgcgtccttgcGggagatttggtactatgaga	14	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235338608	T	T	235338608	2	4	9	1	0	0	0	0	0	0	0	1	922	1103	39	1		1	ARID4B	1	235338608	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46705	235338608	13912013	2492	10643											
ARID4B	51742	broad.mit.edu	37	chr1	235345471	235345471	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacatcttttcgatctttGgccctgctgttttgaagtct	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235345471	T	T	235345471	2	4	9	1	0	0	0	0	0	0	0	1	922	1335	47	2		2	ARID4B	1	235345471	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6863	235345471	13905150	2493	10644											
ARID4B	51742	broad.mit.edu	37	chr1	235345740	235345740	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatccagtttttagacactCttctgtattgcaataccttc	5	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235345740	A	A	235345740	4	1	9	1	0	0	0	0	0	1	0	0	922	922	32	3	1464	3	ARID4B	1	235345740	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	269	235345740	13904881	2494	10645											
ARID4B	51742	broad.mit.edu	37	chr1	235345864	235345864	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcataatcagtatcttcGgataatacttctatatcttt	3	8	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235345864	T	T	235345864	2	4	9	1	0	0	0	0	0	0	0	1	922	1103	39	1		1	ARID4B	1	235345864	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	124	235345864	13904757	2495	10646											
TBCE	6905	broad.mit.edu	37	chr1	235582874	235582874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagttgctgaagcatgtcCtagtatccttttcaccgaga	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235582874	A	A	235582874	3	1	9	1	0	0	0	0	1	0	0	0	15756	681	24	2	472	2	TBCE	1	235582874	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	237010	235582874	13667747	2496	10647											
TBCE	6905	broad.mit.edu	37	chr1	235597465	235597465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggttcctatgaacacccGggaagaaacagccagcagag	13	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235597465	T	T	235597465	1	4	9	0	1	0	0	0	0	0	0	0	15756	1131	39	1		1	TBCE	1	235597465	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14591	235597465	13653156	2497	10648											
TBCE	6905	broad.mit.edu	37	chr1	235602092	235602092	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgaacatagattctcccCgaggagaggcggagagctga	13	9	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235602092	A	A	235602092	2	1	9	1	0	0	0	0	0	0	0	1	15756	639	23	1		1	TBCE	1	235602092	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4627	235602092	13648529	2498	10649											
B3GALNT2	148789	broad.mit.edu	37	chr1	235634251	235634251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtggaggtcttggctctcCcacacgattgtaccttcaaa	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235634251	A	A	235634251	3	1	9	1	0	0	0	0	1	0	0	0	1251	624	22	2	855	2	B3GALNT2	1	235634251	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32159	235634251	13616370	2499	10650											
B3GALNT2	148789	broad.mit.edu	37	chr1	235657991	235657991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaactcagaaaacctacCgttgacttaatgtgggatgc	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235657991	A	A	235657991	3	1	9	1	0	0	0	0	1	0	0	0	1251	666	23	1	1286	1	B3GALNT2	1	235657991	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23740	235657991	13592630	2500	10651											
LYST	1130	broad.mit.edu	37	chr1	235826245	235826245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagttcattcgcattcaccCggctgcatagctgctaagga	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235826245	A	A	235826245	3	1	9	1	0	0	0	0	1	0	0	0	9216	652	23	1	8	1	LYST	1	235826245	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168254	235826245	13424376	2501	10652											
LYST	1130	broad.mit.edu	37	chr1	235827307	235827307	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgggcttatttgatttGggaaatgtaatttctctcac	9	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235827307	T	T	235827307	2	4	9	1	0	0	0	0	0	0	0	1	9216	1335	47	2		2	LYST	1	235827307	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1062	235827307	13423314	2502	10653											
LYST	1130	broad.mit.edu	37	chr1	235827341	235827341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcacaggctttaagtccCatgtgctccataacctagag	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235827341	A	A	235827341	3	1	9	1	0	0	0	0	1	0	0	0	9216	595	21	2	203	2	LYST	1	235827341	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	235827341	13423280	2503	10654											
LYST	1130	broad.mit.edu	37	chr1	235840464	235840464	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacagggcttttgtgtccCgccagactttgtacatagca	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235840464	A	A	235840464	2	1	9	1	0	0	0	0	0	0	0	1	9216	639	23	1		1	LYST	1	235840464	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13123	235840464	13410157	2504	10655											
LYST	1130	broad.mit.edu	37	chr1	235866076	235866076	+	Silent	SNP	G	T	T													gatttctttgacctgttctcGggtctccctgaaagcaaact							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235866076	T	T	235866076	2	4	9	1	0	0	0	0	0	0	0	1	9216	1124	39	1		1	LYST	1	235866076	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25612	235866076	13384545	2505	10656	65	2									
LYST	1130	broad.mit.edu	37	chr1	235866084	235866084	+	Missense_Mutation	SNP	C	A	A													tgacctgttctcgggtctccCtgaaagcaaactgcactagc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235866084	A	A	235866084	3	1	9	1	0	0	0	0	1	0	0	0	9216	681	24	2	1104	2	LYST	1	235866084	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	235866084	13384537	2506	10657	65	2									
LYST	1130	broad.mit.edu	37	chr1	235866187	235866187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatgtggaacagctgacGgggagtctgcccgtaggttt	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235866187	T	T	235866187	3	4	9	1	0	0	0	0	1	0	0	0	9216	1116	39	1	1207	1	LYST	1	235866187	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	103	235866187	13384434	2507	10658											
LYST	1130	broad.mit.edu	37	chr1	235884058	235884058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagatcattgaaggatcGgccagcatgtttgtttaagt	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235884058	T	T	235884058	2	4	9	1	0	0	0	0	0	0	0	1	9216	1124	39	1		1	LYST	1	235884058	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17871	235884058	13366563	2508	10659											
LYST	1130	broad.mit.edu	37	chr1	235918761	235918761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattcccaattatagtggaGggaagaacacacttactctt	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235918761	T	T	235918761	1	4	9	0	1	0	0	0	0	0	0	0	9216	1015	35	2		2	LYST	1	235918761	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34703	235918761	13331860	2509	10660											
LYST	1130	broad.mit.edu	37	chr1	235922603	235922603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatcactgacagagacctGggctgagaggacagcttcca	12	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235922603	T	T	235922603	3	4	9	1	0	0	0	0	1	0	0	0	9216	1357	47	2	4979	2	LYST	1	235922603	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3842	235922603	13328018	2510	10661											
LYST	1130	broad.mit.edu	37	chr1	235972481	235972481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgcaatgcaacagcacCgctcaggataataaacatct	6	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235972481	A	A	235972481	3	1	9	1	0	0	0	0	1	0	0	0	9216	652	23	1	9964	1	LYST	1	235972481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49878	235972481	13278140	2511	10662											
LYST	1130	broad.mit.edu	37	chr1	235972757	235972757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatctcttaaaaccagcCattccatttgaagaactgct	4	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235972757	A	A	235972757	3	1	9	1	0	0	0	0	1	0	0	0	9216	595	21	2	10240	2	LYST	1	235972757	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	276	235972757	13277864	2512	10663											
LYST	1130	broad.mit.edu	37	chr1	235972923	235972923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaagctcaggtaaaagaaGggctctatgacgatactttg	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235972923	T	T	235972923	3	4	9	1	0	0	0	0	1	0	0	0	9216	1000	35	2	10406	2	LYST	1	235972923	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	166	235972923	13277698	2513	10664											
NID1	4811	broad.mit.edu	37	chr1	236189142	236189142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaacaatgtcaaagagtGgggttttaaaaatgcatgag	10	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236189142	T	T	236189142	1	4	9	0	1	0	0	0	0	0	0	0	10509	1363	47	2		2	NID1	1	236189142	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	216219	236189142	13061479	2514	10665											
GPR137B	7107	broad.mit.edu	37	chr1	236343209	236343209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcaagtgactgccatcGgtgtcaccgtgatactgctt	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236343209	T	T	236343209	3	4	9	1	0	0	0	0	1	0	0	0	6711	1116	39	1	732	1	GPR137B	1	236343209	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	154067	236343209	12907412	2515	10666											
GPR137B	7107	broad.mit.edu	37	chr1	236368559	236368559	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcagggagggtaagaccCtacttcatgttagacaagcc	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236368559	A	A	236368559	1	1	9	0	1	0	0	0	0	0	0	0	6711	696	24	2		2	GPR137B	1	236368559	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25350	236368559	12882062	2516	10667											
EDARADD	128178	broad.mit.edu	37	chr1	236647457	236647457	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagaggacagcctcggcCgtgaatgagaagaagtgcaa	13	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236647457	A	A	236647457	1	1	9	0	1	0	0	0	0	0	0	0	4946	667	23	1		1	EDARADD	1	236647457	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	278898	236647457	12603164	2517	10668											
HEATR1	55127	broad.mit.edu	37	chr1	236715279	236715279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttaattgtttaatggttGggaatagtttgggaattacc	10	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236715279	T	T	236715279	1	4	9	0	1	0	0	0	0	0	0	0	7094	1363	47	2		2	HEATR1	1	236715279	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	67822	236715279	12535342	2518	10669											
HEATR1	55127	broad.mit.edu	37	chr1	236729205	236729205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaacagtaagtgacaccCgatctacgcttaccttcttt	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236729205	A	A	236729205	1	1	9	0	1	0	0	0	0	0	0	0	7094	667	23	1		1	HEATR1	1	236729205	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13926	236729205	12521416	2519	10670											
HEATR1	55127	broad.mit.edu	37	chr1	236735985	236735985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcataacattcagagtcaGggaacaacagcatgtgctca	8	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236735985	T	T	236735985	1	4	9	0	1	0	0	0	0	0	0	0	7094	1015	35	2		2	HEATR1	1	236735985	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6780	236735985	12514636	2520	10671											
HEATR1	55127	broad.mit.edu	37	chr1	236746107	236746107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcatcatctcaaacagccCaatgagcaagtgcagatagt	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236746107	A	A	236746107	3	1	9	1	0	0	0	0	1	0	0	0	7094	594	21	2	4051	2	HEATR1	1	236746107	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10122	236746107	12504514	2521	10672											
HEATR1	55127	broad.mit.edu	37	chr1	236760259	236760259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaactgagctgagctgccCgggtactcagcaaaaacctg	10	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236760259	A	A	236760259	2	1	9	1	0	0	0	0	0	0	0	1	7094	639	23	1		1	HEATR1	1	236760259	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14152	236760259	12490362	2522	10673											
ACTN2	88	broad.mit.edu	37	chr1	236889263	236889263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagaaggtctgctgctttGgtgtcagaggaaaactgctc	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236889263	T	T	236889263	3	4	9	1	0	0	0	0	1	0	0	0	205	1357	47	2	497	2	ACTN2	1	236889263	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	129004	236889263	12361358	2523	10674											
MTR	4548	broad.mit.edu	37	chr1	236973863	236973863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagacactctctgtgtcccCatctgtggaaaggccggatt	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236973863	A	A	236973863	3	1	9	1	0	0	0	0	1	0	0	0	10052	594	21	2	488	2	MTR	1	236973863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84600	236973863	12276758	2524	10675											
MTR	4548	broad.mit.edu	37	chr1	236998970	236998970	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgcaacttaattgcttccGagccagacatcgcaaaggtt	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236998970	T	T	236998970	4	4	9	1	0	0	0	0	0	1	0	0	10052	1059	37	3	1366	3	MTR	1	236998970	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25107	236998970	12251651	2525	10676											
MTR	4548	broad.mit.edu	37	chr1	236999049	236999049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttgacactcatttaacCgtgccagttgtcccattaat	5	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236999049	A	A	236999049	1	1	9	0	1	0	0	0	0	0	0	0	10052	667	23	1		1	MTR	1	236999049	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	236999049	12251572	2526	10677											
MTR	4548	broad.mit.edu	37	chr1	237024423	237024423	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttgtcttttttAgggcattgaaaaacatatta	5	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237024423	T	T	237024423	5	4	9	1	0	0	0	0	0	0	1	0	10052	434	15	5	2120	5	MTR	1	237024423	Splice_Site	SNP	A	TCGA-05-4396-01A-21D-1855-08	25374	237024423	12226198	2527	10678											
MTR	4548	broad.mit.edu	37	chr1	237060370	237060370	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcaggcctctacttctcCaatttgaagtccaaatattt	5	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237060370	A	A	237060370	2	1	9	1	0	0	0	0	0	0	0	1	10052	581	21	2		2	MTR	1	237060370	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35947	237060370	12190251	2528	10679											
RYR2	6262	broad.mit.edu	37	chr1	237604756	237604756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctgtggacgtgaaatcCgtgagaatgggatctataca	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237604756	A	A	237604756	2	1	9	1	0	0	0	0	0	0	0	1	13880	639	23	1		1	RYR2	1	237604756	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	544386	237604756	11645865	2529	10680											
RYR2	6262	broad.mit.edu	37	chr1	237608779	237608779	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaatcacgcacagccCgagttatccggagcacagtc	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237608779	A	A	237608779	2	1	9	1	0	0	0	0	0	0	0	1	13880	644	23	1		1	RYR2	1	237608779	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4023	237608779	11641842	2530	10681											
RYR2	6262	broad.mit.edu	37	chr1	237659798	237659798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccttacatgtgattccCgtctctttaaagcatgagac	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237659798	A	A	237659798	1	1	9	0	1	0	0	0	0	0	0	0	13880	667	23	1		1	RYR2	1	237659798	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	51019	237659798	11590823	2531	10682											
RYR2	6262	broad.mit.edu	37	chr1	237664010	237664010	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgttttccccccaataGgttgtattgctcgtactgta	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237664010	T	T	237664010	5	4	9	1	0	0	0	0	0	0	1	0	13880	1014	35	2	2285	2	RYR2	1	237664010	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	4212	237664010	11586611	2532	10683											
RYR2	6262	broad.mit.edu	37	chr1	237664098	237664098	+	Missense_Mutation	SNP	C	A	A													ctgtttagatctgagtgcccCaagcatctcgttccgaatta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237664098	A	A	237664098	3	1	9	1	0	0	0	0	1	0	0	0	13880	594	21	2	2373	2	RYR2	1	237664098	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	237664098	11586523	2533	10684	66	2									
RYR2	6262	broad.mit.edu	37	chr1	237664107	237664107	+	Nonsense_Mutation	SNP	C	A	A													tctgagtgccccaagcatctCgttccgaattaatggacaac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237664107	A	A	237664107	4	1	9	1	0	0	0	0	0	1	0	0	13880	893	31	3	2382	3	RYR2	1	237664107	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	237664107	11586514	2534	10685	66	2									
RYR2	6262	broad.mit.edu	37	chr1	237711747	237711747	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagttaccagctgacaagtGgatacaagcctgcccctatg	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237711747	T	T	237711747	4	4	9	1	0	0	0	0	0	1	0	0	13880	1349	47	2	3025	2	RYR2	1	237711747	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47640	237711747	11538874	2535	10686											
RYR2	6262	broad.mit.edu	37	chr1	237729973	237729973	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtattttgaatttgagacGgtcactgctggagacatgag	13	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237729973	T	T	237729973	2	4	9	1	0	0	0	0	0	0	0	1	13880	1103	39	1		1	RYR2	1	237729973	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18226	237729973	11520648	2536	10687											
RYR2	6262	broad.mit.edu	37	chr1	237729993	237729993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcactgctggagacatgaGggttggttggagtcgtcctg	17	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237729993	T	T	237729993	3	4	9	1	0	0	0	0	1	0	0	0	13880	1000	35	2	3451	2	RYR2	1	237729993	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	237729993	11520628	2537	10688											
RYR2	6262	broad.mit.edu	37	chr1	237730011	237730011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggttggttggagtcgtcCtggttgtcaaccggatcagg	17	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237730011	A	A	237730011	3	1	9	1	0	0	0	0	1	0	0	0	13880	681	24	2	3469	2	RYR2	1	237730011	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	237730011	11520610	2538	10689											
RYR2	6262	broad.mit.edu	37	chr1	237777847	237777847	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagggcagtcttcatgccCgggacccagttggagggact	15	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237777847	A	A	237777847	2	1	9	1	0	0	0	0	0	0	0	1	13880	643	23	1		1	RYR2	1	237777847	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47836	237777847	11472774	2539	10690											
RYR2	6262	broad.mit.edu	37	chr1	237791344	237791344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgagtgtgagaatggGcaaagaagaagagaagctca	14	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237791344	T	T	237791344	3	4	9	1	0	0	0	0	1	0	0	0	13880	1203	42	3	6566	3	RYR2	1	237791344	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13497	237791344	11459277	2540	10691											
RYR2	6262	broad.mit.edu	37	chr1	237796785	237796785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcacacacatggacacacGgggattgacgatgtgattga	13	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237796785	T	T	237796785	1	4	9	0	1	0	0	0	0	0	0	0	13880	1131	39	1		1	RYR2	1	237796785	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5441	237796785	11453836	2541	10692											
RYR2	6262	broad.mit.edu	37	chr1	237796914	237796914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggtggccaactgttgcCgttttctctgttacttctgt	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237796914	A	A	237796914	3	1	9	1	0	0	0	0	1	0	0	0	13880	652	23	1	6762	1	RYR2	1	237796914	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129	237796914	11453707	2542	10693											
RYR2	6262	broad.mit.edu	37	chr1	237843766	237843766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttcaggtcgttcttcCtttaattgatcagtatttca	5	8	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237843766	A	A	237843766	3	1	9	1	0	0	0	0	1	0	0	0	13880	681	24	2	9152	2	RYR2	1	237843766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46852	237843766	11406855	2543	10694											
RYR2	6262	broad.mit.edu	37	chr1	237870294	237870294	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgtttgtccaaacatacCgtctttggagaaactcatgg	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237870294	A	A	237870294	3	1	9	1	0	0	0	0	1	0	0	0	13880	652	23	1	9896	1	RYR2	1	237870294	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26528	237870294	11380327	2544	10695											
RYR2	6262	broad.mit.edu	37	chr1	237886477	237886477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctttacaaagacttacCaaacaggactgatgatacct	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237886477	A	A	237886477	3	1	9	1	0	0	0	0	1	0	0	0	13880	594	21	2	10898	2	RYR2	1	237886477	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16183	237886477	11364144	2545	10696											
RYR2	6262	broad.mit.edu	37	chr1	237936884	237936884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgatgaacaaggacaacGgaatttctccaaagctatcc	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237936884	T	T	237936884	3	4	9	1	0	0	0	0	1	0	0	0	13880	1116	39	1	12057	1	RYR2	1	237936884	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50407	237936884	11313737	2546	10697											
RYR2	6262	broad.mit.edu	37	chr1	237972270	237972270	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggcattcaattttttcCgaaaattctacaataaaagt	6	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237972270	A	A	237972270	2	1	9	1	0	0	0	0	0	0	0	1	13880	644	23	1		1	RYR2	1	237972270	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35386	237972270	11278351	2547	10698											
RYR2	6262	broad.mit.edu	37	chr1	237982384	237982384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtgctggaggagggatcGgggatgaaatcgaagaccca	16	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237982384	T	T	237982384	3	4	9	1	0	0	0	0	1	0	0	0	13880	1116	39	1	14884	1	RYR2	1	237982384	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10114	237982384	11268237	2548	10699											
ZP4	57829	broad.mit.edu	37	chr1	238050122	238050122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccatttttcacatccCtagttgccaccagttcattt	5	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050122	A	A	238050122	3	1	9	1	0	0	0	0	1	0	0	0	18347	681	24	2	862	2	ZP4	1	238050122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67738	238050122	11200499	2549	10700											
ZP4	57829	broad.mit.edu	37	chr1	238053137	238053137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccccacccccaccaccccCacaagaccctgagagcttcc	4	24	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238053137	A	A	238053137	1	1	9	0	1	0	0	0	0	0	0	0	18347	609	21	2		2	ZP4	1	238053137	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3015	238053137	11197484	2550	10701											
FMN2	56776	broad.mit.edu	37	chr1	240286577	240286577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgccatgggtcttctcCttccttttagtgattgcttc	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240286577	A	A	240286577	3	1	9	1	0	0	0	0	1	0	0	0	6008	681	24	2	1720	2	FMN2	1	240286577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2233440	240286577	8964044	2551	10702											
FMN2	56776	broad.mit.edu	37	chr1	240334455	240334455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagtgtagaaagtgtccCaaagttggtatctgaatatg	11	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240334455	A	A	240334455	1	1	9	0	1	0	0	0	0	0	0	0	6008	609	21	2		2	FMN2	1	240334455	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47878	240334455	8916166	2552	10703											
FMN2	56776	broad.mit.edu	37	chr1	240341334	240341334	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccatccaaacctccCgatgaggaacacaggctcga	10	15	0	1	rs141897898	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240341334	A	A	240341334	2	1	9	1	0	0	0	0	0	0	0	1	6008	639	23	1		1	FMN2	1	240341334	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6879	240341334	8909287	2553	10704											
FMN2	56776	broad.mit.edu	37	chr1	240497390	240497390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatttctttaaatatgatGgggttttttgttcattagga	8	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240497390	T	T	240497390	1	4	9	0	1	0	0	0	0	0	0	0	6008	1363	47	2		2	FMN2	1	240497390	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	156056	240497390	8753231	2554	10705											
RGS7	6000	broad.mit.edu	37	chr1	241032054	241032054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaactggaacaaatcttcCaaacgactcacaaggactca	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241032054	A	A	241032054	1	1	9	0	1	0	0	0	0	0	0	0	13419	609	21	2		2	RGS7	1	241032054	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	534664	241032054	8218567	2555	10706											
RGS7	6000	broad.mit.edu	37	chr1	241094094	241094094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaaaagaagtggaaccCagattagacaaataaaaaat	8	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241094094	A	A	241094094	1	1	9	0	1	0	0	0	0	0	0	0	13419	609	21	2		2	RGS7	1	241094094	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62040	241094094	8156527	2556	10707											
RGS7	6000	broad.mit.edu	37	chr1	241099990	241099990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcagccattaatgttccCaaatggagcgcctccactgt	10	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241099990	A	A	241099990	3	1	9	1	0	0	0	0	1	0	0	0	13419	593	21	2	1276	2	RGS7	1	241099990	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5896	241099990	8150631	2557	10708											
FH	2271	broad.mit.edu	37	chr1	241676979	241676979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtttacttcagcggccgctCgcttcaagatgccaaaagct	10	12	2	1	rs75086406		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241676979	A	A	241676979	3	1	9	1	0	0	0	0	1	0	0	0	5932	884	31	3	1262	3	FH	1	241676979	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	576989	241676979	7573642	2558	10709											
KMO	8564	broad.mit.edu	37	chr1	241714357	241714357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctcaggtaggtttacccCggagatcattgtgcattgat	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241714357	A	A	241714357	1	1	9	0	1	0	0	0	0	0	0	0	8495	667	23	1		1	KMO	1	241714357	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	37378	241714357	7536264	2559	10710											
CHML	1122	broad.mit.edu	37	chr1	241797246	241797246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctggatttggaggtggaGggcagaattcttcagttgga	15	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241797246	T	T	241797246	3	4	9	1	0	0	0	0	1	0	0	0	3382	1000	35	2	151	2	CHML	1	241797246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82889	241797246	7453375	2560	10711											
WDR64	128025	broad.mit.edu	37	chr1	241946679	241946679	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctccatcgatggctcaGtaaggtaggccaagatggca	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241946679	C	C	241946679	3	2	9	1	0	0	0	0	1	0	0	0	17442	1029	36	4	2757	4	WDR64	1	241946679	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149433	241946679	7303942	2561	10712											
EXO1	9156	broad.mit.edu	37	chr1	242015727	242015727	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagagagtaagttaattctCtacttaatctctaacttcat	5	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242015727	A	A	242015727	1	1	9	0	1	0	0	0	0	0	0	0	5342	928	32	3		3	EXO1	1	242015727	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	69048	242015727	7234894	2562	10713											
PLD5	200150	broad.mit.edu	37	chr1	242253166	242253167	+	Missense_Mutation	DNP	CG	AT	AT													cttcatcatgttatacgttcCggggatcctttccgcctgtg					rs147065464	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	242253167	AT	AT	242253166	3	1	9	1	0	0	0	0	1	0	0	0	12144	652	23	1	13	1	PLD5	1	242253166	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	237439	242253166	6997455	2563	10714											
SDCCAG8	10806	broad.mit.edu	37	chr1	243456392	243456392	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactggcacattttattttaGggaaacatgcacaattcttg	7	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243456392	T	T	243456392	5	4	9	1	0	0	0	0	0	0	1	0	14072	1014	35	2	568	2	SDCCAG8	1	243456392	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	1203226	243456392	5794229	2564	10715											
ZNF238	10472	broad.mit.edu	37	chr1	244218035	244218035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacagggtacagtatgagcCggcccatctggctcccctga	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244218035	A	A	244218035	3	1	9	1	0	0	0	0	1	0	0	0	17916	652	23	1	965	1	ZNF238	1	244218035	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	761643	244218035	5032586	2565	10716											
ZNF238	10472	broad.mit.edu	37	chr1	244218594	244218594	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttggtgaactccttgtcGgtcaaaagcgaagcactgag	13	8	1	2	rs148342414		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244218594	T	T	244218594	2	4	9	1	0	0	0	0	0	0	0	1	17916	1103	39	1		1	ZNF238	1	244218594	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	559	244218594	5032027	2566	10717											
C1orf101	257044	broad.mit.edu	37	chr1	244640781	244640781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaattgaatcctacaacGgaaccctgaggtgaaaagtt	9	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244640781	T	T	244640781	1	4	9	0	1	0	0	0	0	0	0	0	1996	1131	39	1		1	C1orf101	1	244640781	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	422187	244640781	4609840	2567	10718											
C1orf101	257044	broad.mit.edu	37	chr1	244641147	244641147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggcttaaaaaatagtaaGggaattttattaatatcata	6	2	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244641147	T	T	244641147	1	4	9	0	1	0	0	0	0	0	0	0	1996	1015	35	2		2	C1orf101	1	244641147	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	366	244641147	4609474	2568	10719											
HNRNPU	3192	broad.mit.edu	37	chr1	245020883	245020883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacactgagatcaggccCtaaacattttacttaccatc	4	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245020883	A	A	245020883	1	1	9	0	1	0	0	0	0	0	0	0	7340	696	24	2		2	HNRNPU	1	245020883	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	379736	245020883	4229738	2569	10720											
EFCAB2	84288	broad.mit.edu	37	chr1	245250572	245250572	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctttttctcaagaggaaatGgaagaaatgttgtctgctgc	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	245250572	C	C	245250572	1	2	9	0	1	0	0	0	0	0	0	0	4974	1348	47	4		4	EFCAB2	1	245250572	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	229689	245250572	4000049	2570	10721											
KIF26B	55083	broad.mit.edu	37	chr1	245849588	245849588	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggggtcctgccgtctccCgccccactgcctccctcgag	11	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245849588	A	A	245849588	2	1	9	1	0	0	0	0	0	0	0	1	8365	639	23	1		1	KIF26B	1	245849588	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	599016	245849588	3401033	2571	10722											
SMYD3	64754	broad.mit.edu	37	chr1	246498751	246498751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaggcatttgcattccCgcttgtggtctggccaagct	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246498751	A	A	246498751	3	1	9	1	0	0	0	0	1	0	0	0	14937	652	23	1	1072	1	SMYD3	1	246498751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	649163	246498751	2751870	2572	10723											
TFB2M	64216	broad.mit.edu	37	chr1	246711878	246711878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttccagcggccctttcCgggtgtatatatcaaatgat	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246711878	A	A	246711878	3	1	9	1	0	0	0	0	1	0	0	0	15917	652	23	1	375	1	TFB2M	1	246711878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	213127	246711878	2538743	2573	10724											
CNST	163882	broad.mit.edu	37	chr1	246810654	246810654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgagacagcagggagccCgtctgggccagactcttctg	13	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246810654	A	A	246810654	3	1	9	1	0	0	0	0	1	0	0	0	3666	652	23	1	1181	1	CNST	1	246810654	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98776	246810654	2439967	2574	10725											
CNST	163882	broad.mit.edu	37	chr1	246810769	246810769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattgctgaagaccctaaGgtgtttctttccagcaagtc	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246810769	T	T	246810769	3	4	9	1	0	0	0	0	1	0	0	0	3666	991	35	2	1296	2	CNST	1	246810769	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	115	246810769	2439852	2575	10726											
CNST	163882	broad.mit.edu	37	chr1	246823459	246823459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctacatgtagagatgtccCgccttaataaaagaattata	7	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246823459	A	A	246823459	1	1	9	0	1	0	0	0	0	0	0	0	3666	667	23	1		1	CNST	1	246823459	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12690	246823459	2427162	2576	10727											
SCCPDH	51097	broad.mit.edu	37	chr1	246929382	246929382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggctatgtggctaccccCatagctatggttcaggcagc	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246929382	A	A	246929382	2	1	9	1	0	0	0	0	0	0	0	1	13997	581	21	2		2	SCCPDH	1	246929382	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105923	246929382	2321239	2577	10728											
AHCTF1	25909	broad.mit.edu	37	chr1	247050568	247050568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataagtttaacttggcccCaagaaatggcaaatacagtt	8	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247050568	A	A	247050568	3	1	9	1	0	0	0	0	1	0	0	0	408	595	21	2	4451	2	AHCTF1	1	247050568	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	121186	247050568	2200053	2578	10729											
AHCTF1	25909	broad.mit.edu	37	chr1	247059155	247059155	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctgttatccatcttcGgatataaccagtcaaaagtc	5	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247059155	T	T	247059155	2	4	9	1	0	0	0	0	0	0	0	1	408	1124	39	1		1	AHCTF1	1	247059155	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8587	247059155	2191466	2579	10730											
ZNF695	57116	broad.mit.edu	37	chr1	247151363	247151363	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcattgaaagtttttgctatGagtagttgctgagcataggt	12	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247151363	T	T	247151363	3	4	9	1	0	0	0	0	1	0	0	0	18225	1290	45	3	1097	3	ZNF695	1	247151363	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	92208	247151363	2099258	2580	10731											
VN1R5	317705	broad.mit.edu	37	chr1	247420218	247420218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttttgtcttcacatactGggtggactttacgttctcat	9	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247420218	T	T	247420218	3	4	9	1	0	0	0	0	1	0	0	0	17308	1357	47	2	847	2	VN1R5	1	247420218	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	268855	247420218	1830403	2581	10732											
NLRP3	114548	broad.mit.edu	37	chr1	247586560	247586560	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcacgtgtttcgaatccCactgtgatatgccaggaaga	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247586560	A	A	247586560	2	1	9	1	0	0	0	0	0	0	0	1	10573	581	21	2		2	NLRP3	1	247586560	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	166342	247586560	1664061	2582	10733											
NLRP3	114548	broad.mit.edu	37	chr1	247588607	247588607	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagccaaagctaaaaagcTgcagatccagcccagccagc	9	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588607	A	A	247588607	3	1	9	1	0	0	0	0	1	0	0	0	10573	1580	55	5	1872	5	NLRP3	1	247588607	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	2047	247588607	1662014	2583	10734											
OR2B11	127623	broad.mit.edu	37	chr1	247614370	247614370	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcctggccagaagtctcctCagagcccccttcatatcttt	6	15	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614370	A	A	247614370	2	1	9	1	0	0	0	0	0	0	0	1	11082	813	29	3		3	OR2B11	1	247614370	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25763	247614370	1636251	2584	10735											
OR2B11	127623	broad.mit.edu	37	chr1	247615153	247615153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgatggcgacgttcccCaacatggccagcacatagga	12	11	0	1	rs35822304		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247615153	A	A	247615153	3	1	9	1	0	0	0	0	1	0	0	0	11082	593	21	2	824	2	OR2B11	1	247615153	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	783	247615153	1635468	2585	10736											
OR2G2	81470	broad.mit.edu	37	chr1	247752517	247752517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctacactgtggtaaccCgcatgcttaaccctcttatt	5	13	3	0	rs149547123		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247752517	A	A	247752517	3	1	9	1	0	0	0	0	1	0	0	0	11092	652	23	1	858	1	OR2G2	1	247752517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	137364	247752517	1498104	2586	10737											
OR2W3	343171	broad.mit.edu	37	chr1	248059390	248059390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgaccctgcgcttacccCgctgtgggcaccacgaggtg	13	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059390	A	A	248059390	3	1	9	1	0	0	0	0	1	0	0	0	11127	652	23	1	504	1	OR2W3	1	248059390	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	306873	248059390	1191231	2587	10738											
OR2L8	391190	broad.mit.edu	37	chr1	248112267	248112267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttttcattttcctgatGgctctaattggaaacctgtc	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112267	T	T	248112267	3	4	9	1	0	0	0	0	1	0	0	0	11103	1348	47	2	110	2	OR2L8	1	248112267	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52877	248112267	1138354	2588	10739											
OR2L8	391190	broad.mit.edu	37	chr1	248112520	248112520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcatctatggcctatgatCgttacattgctatttgcttt	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248112520	A	A	248112520	3	1	9	1	0	0	0	0	1	0	0	0	11103	884	31	3	363	3	OR2L8	1	248112520	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	253	248112520	1138101	2589	10740											
OR2AK2	391191	broad.mit.edu	37	chr1	248128703	248128703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaggaaatcaaagttttGggacagattttctacttgtt	8	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248128703	T	T	248128703	3	4	9	1	0	0	0	0	1	0	0	0	11080	1348	47	2	72	2	OR2AK2	1	248128703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16183	248128703	1121918	2590	10741											
OR2L13	284521	broad.mit.edu	37	chr1	248166715	248166715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtctatctccttcactGggtgtgggattcagagtttc	10	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248166715	T	T	248166715	1	4	9	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248166715	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38012	248166715	1083906	2591	10742											
OR2L13	284521	broad.mit.edu	37	chr1	248185187	248185187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaacccctgcagataatGgggaactactgtacttgact	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248185187	T	T	248185187	1	4	9	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248185187	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18472	248185187	1065434	2592	10743											
OR2L2	26246	broad.mit.edu	37	chr1	248201611	248201611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaactgatttcatcttattGgggctgttcccacaatcaag	7	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248201611	T	T	248201611	3	4	9	1	0	0	0	0	1	0	0	0	11101	1339	47	2	44	2	OR2L2	1	248201611	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16424	248201611	1049010	2593	10744											
OR2L2	26246	broad.mit.edu	37	chr1	248201726	248201726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatctttttggacatcCatctccacacacctatgtat	3	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248201726	A	A	248201726	3	1	9	1	0	0	0	0	1	0	0	0	11101	594	21	2	159	2	OR2L2	1	248201726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115	248201726	1048895	2594	10745											
OR2L2	26246	broad.mit.edu	37	chr1	248201802	248201802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatctccaccattgttcCaaagatggtttatgattttc	5	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248201802	A	A	248201802	3	1	9	1	0	0	0	0	1	0	0	0	11101	594	21	2	235	2	OR2L2	1	248201802	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	248201802	1048819	2595	10746											
OR2L2	26246	broad.mit.edu	37	chr1	248202225	248202225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgcatgttcctatggccGggttctccttgctgtctacc	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248202225	T	T	248202225	3	4	9	1	0	0	0	0	1	0	0	0	11101	1116	39	1	658	1	OR2L2	1	248202225	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	423	248202225	1048396	2596	10747											
OR2L3	391192	broad.mit.edu	37	chr1	248224549	248224550	+	Missense_Mutation	DNP	TG	AT	AT													aatggtgactctggcctgcaTggacacctgggtctatgagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	248224550	AT	AT	248224549	3	1	9	1	0	0	0	0	1	0	0	0	11102	1464	51	5	568	5	OR2L3	1	248224549	Missense_Mutation	DNP	TG	TCGA-05-4396-01A-21D-1855-08	22324	248224549	1026072	2597	10748											
OR2L13	284521	broad.mit.edu	37	chr1	248247753	248247753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtggagccggccggtccCggtgaatcaggagaatcatg	16	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247753	A	A	248247753	1	1	9	0	1	0	0	0	0	0	0	0	11100	667	23	1		1	OR2L13	1	248247753	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23204	248247753	1002868	2598	10749											
OR2M5	127059	broad.mit.edu	37	chr1	248308680	248308680	+	Silent	SNP	C	A	A													ctcatgctcatctgctctacCgtacccaagatggccttcaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308680	A	A	248308680	2	1	9	1	0	0	0	0	0	0	0	1	11107	639	23	1		1	OR2M5	1	248308680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60927	248308680	941941	2599	10750	67	2									
OR2M5	127059	broad.mit.edu	37	chr1	248308686	248308686	+	Silent	SNP	C	A	A													ctcatctgctctaccgtaccCaagatggccttcaactactt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308686	A	A	248308686	2	1	9	1	0	0	0	0	0	0	0	1	11107	581	21	2		2	OR2M5	1	248308686	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6	248308686	941935	2600	10751	67	2									
OR2M5	127059	broad.mit.edu	37	chr1	248308835	248308835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatattgccatttgccaccCtctaagatacaccaatctca	3	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308835	A	A	248308835	3	1	9	1	0	0	0	0	1	0	0	0	11107	681	24	2	388	2	OR2M5	1	248308835	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	248308835	941786	2601	10752											
OR2M2	391194	broad.mit.edu	37	chr1	248343295	248343295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcacattcatcatggcatGggagaatcagaccttcaact	8	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343295	T	T	248343295	3	4	9	1	0	0	0	0	1	0	0	0	11104	1357	47	2	10	2	OR2M2	1	248343295	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34460	248343295	907326	2602	10753											
OR2M2	391194	broad.mit.edu	37	chr1	248343489	248343489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcagccaactgtccCtcatggacctcatgctcatc	5	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343489	A	A	248343489	3	1	9	1	0	0	0	0	1	0	0	0	11104	681	24	2	204	2	OR2M2	1	248343489	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	194	248343489	907132	2603	10754											
OR2M2	391194	broad.mit.edu	37	chr1	248344136	248344136	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctacaccatcctcactccCatgctgaatcccctcatcta	2	18	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248344136	A	A	248344136	2	1	9	1	0	0	0	0	0	0	0	1	11104	581	21	2		2	OR2M2	1	248344136	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	647	248344136	906485	2604	10755											
OR2M3	127062	broad.mit.edu	37	chr1	248366642	248366642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctgtctggcagcaagtcCatttctatggctggttgtgc	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248366642	A	A	248366642	2	1	9	1	0	0	0	0	0	0	0	1	11105	581	21	2		2	OR2M3	1	248366642	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22506	248366642	883979	2605	10756											
OR2M3	127062	broad.mit.edu	37	chr1	248366884	248366884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcctactgtgggtctcGggaaatagcccacttcttct	8	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366884	T	T	248366884	3	4	9	1	0	0	0	0	1	0	0	0	11105	1116	39	1	517	1	OR2M3	1	248366884	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	242	248366884	883737	2606	10757											
OR2T12	127064	broad.mit.edu	37	chr1	248457971	248457971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaggtttacacacgtccCcagccaccgtttcagggctt	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248457971	A	A	248457971	3	1	9	1	0	0	0	0	1	0	0	0	11113	623	22	2	55	2	OR2T12	1	248457971	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	91087	248457971	792650	2607	10758											
OR2M7	391196	broad.mit.edu	37	chr1	248487242	248487242	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgatgatgattgcaacaGggaaaacaagcattactata	9	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487242	T	T	248487242	3	4	9	1	0	0	0	0	1	0	0	0	11108	1000	35	2	312	2	OR2M7	1	248487242	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29271	248487242	763379	2608	10759											
OR2M7	391196	broad.mit.edu	37	chr1	248487862	248487862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgaaggtctgattctcCcatgccatgatgaatatgcc	10	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248487862	A	A	248487862	3	1	9	1	0	0	0	0	1	0	0	0	11108	624	22	2	932	2	OR2M7	1	248487862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	620	248487862	762759	2609	10760											
OR2T4	127074	broad.mit.edu	37	chr1	248525551	248525551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatctctcctgctcagaCacctcactctatgagatttt	5	12	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525551	A	A	248525551	3	1	9	1	0	0	0	0	1	0	0	0	11121	477	17	3	671	3	OR2T4	1	248525551	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37689	248525551	725070	2610	10761											
OR2T2	401992	broad.mit.edu	37	chr1	248616174	248616174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccatcctgccttccccGggcttctctttgcaatagtc	6	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248616174	T	T	248616174	3	4	9	1	0	0	0	0	1	0	0	0	11114	1116	39	1	78	1	OR2T2	1	248616174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90623	248616174	634447	2611	10762											
PGBD2	267002	broad.mit.edu	37	chr1	249211398	249211398	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttctgggaaacctctccCgattcacatcatcatcttgt	6	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249211398	A	A	249211398	2	1	9	1	0	0	0	0	0	0	0	1	11876	639	23	1		1	PGBD2	1	249211398	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	595224	249211398	39223	2612	10763											
PGBD2	267002	broad.mit.edu	37	chr1	249212557	249212557	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcagggagtaccacatcCggtgacatcatgagacatgc	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249212557	A	A	249212557	2	1	9	1	0	0	0	0	0	0	0	1	11876	643	23	1		1	PGBD2	1	249212557	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1159	249212557	38064	2613	10764											
FAM110C	642273	broad.mit.edu	37	chr2	41613	41613	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagaagtcttcatcatcGggaaggtttgcttcctgagg	11	8	4	2	rs151311604	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41613	T	T	41613	2	4	9	1	0	0	0	0	0	0	0	1	5444	1124	39	1		1	FAM110C	2	41613	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08		41613	243157760	2614	10765											
SH3YL1	26751	broad.mit.edu	37	chr2	230956	230956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaggaacctgatatcaGggacagaatgttctacagaa	9	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230956	T	T	230956	1	4	9	0	1	0	0	0	0	0	0	0	14376	1015	35	2		2	SH3YL1	2	230956	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	189343	230956	242968417	2615	10766											
ACP1	52	broad.mit.edu	37	chr2	271918	271918	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttcaggaaacttgtaacCgatcaaaacatctcagagaa	7	8	3	1	rs142497773		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	271918	A	A	271918	2	1	9	1	0	0	0	0	0	0	0	1	162	639	23	1		1	ACP1	2	271918	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40962	271918	242927455	2616	10767											
ACP1	52	broad.mit.edu	37	chr2	277079	277079	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacttattattgaagatccCtattatgtaagtacagttca	5	7	1	2	rs144534474		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	277079	G	G	277079	2	3	9	1	0	0	0	0	0	0	0	1	162	668	24	4		4	ACP1	2	277079	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5161	277079	242922294	2617	10768											
ACP1	52	broad.mit.edu	37	chr2	277250	277250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgactctgactttgagacGgtgtaccagcagtgtgtcag	12	8	2	3	rs55709515	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	277250	T	T	277250	2	4	9	1	0	0	0	0	0	0	0	1	162	1103	39	1		1	ACP1	2	277250	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	171	277250	242922123	2618	10769											
SNTG2	54221	broad.mit.edu	37	chr2	1079389	1079389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagtgtttcggacgagccCcatgaacggtctttgaaaag	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1079389	A	A	1079389	1	1	9	0	1	0	0	0	0	0	0	0	14989	638	22	2		2	SNTG2	2	1079389	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	802139	1079389	242119984	2619	10770											
TPO	7173	broad.mit.edu	37	chr2	1500583	1500583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaacatctgaatgtttcCgatataagttaacaatgcaa	5	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1500583	A	A	1500583	1	1	9	0	1	0	0	0	0	0	0	0	16534	667	23	1		1	TPO	2	1500583	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	421194	1500583	241698790	2620	10771											
PXDN	7837	broad.mit.edu	37	chr2	1653122	1653122	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgggtgaactgctcgtcGggtgtgacggtctccgtccc	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1653122	T	T	1653122	2	4	9	1	0	0	0	0	0	0	0	1	12955	1103	39	1		1	PXDN	2	1653122	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152539	1653122	241546251	2621	10772											
MYT1L	23040	broad.mit.edu	37	chr2	1920934	1920934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgacagagacagagtcatGggtgtttgcacccccaaggg	14	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1920934	T	T	1920934	1	4	9	0	1	0	0	0	0	0	0	0	10201	1363	47	2		2	MYT1L	2	1920934	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	267812	1920934	241278439	2622	10773											
MYT1L	23040	broad.mit.edu	37	chr2	1926119	1926119	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggctttctgtcctccccGggaagttgtctcggagactg	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1926119	T	T	1926119	2	4	9	1	0	0	0	0	0	0	0	1	10201	1103	39	1		1	MYT1L	2	1926119	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5185	1926119	241273254	2623	10774											
MYT1L	23040	broad.mit.edu	37	chr2	1926724	1926724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttctgagagcacaacacCgtgtccttgggctaatagtt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1926724	A	A	1926724	3	1	9	1	0	0	0	0	1	0	0	0	10201	652	23	1	2801	1	MYT1L	2	1926724	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	605	1926724	241272649	2624	10775											
ADI1	55256	broad.mit.edu	37	chr2	3504719	3504719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccatccaggatgtagcGgatctcatcgtccaagtgca	10	12	1	0	rs139359190		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3504719	T	T	3504719	3	4	9	1	0	0	0	0	1	0	0	0	315	1116	39	1	261	1	ADI1	2	3504719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1577995	3504719	239694654	2625	10776											
RNASEH1	246243	broad.mit.edu	37	chr2	3595541	3595541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgaatgtccatcccctGggtaagcctctccagtgcca	8	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3595541	T	T	3595541	3	4	9	1	0	0	0	0	1	0	0	0	13522	1357	47	2	114	2	RNASEH1	2	3595541	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90822	3595541	239603832	2626	10777											
RNASEH1	246243	broad.mit.edu	37	chr2	3596657	3596657	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgataacttacatgaatttcCgctctttggtttgtctgccg	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3596657	A	A	3596657	2	1	9	1	0	0	0	0	0	0	0	1	13522	639	23	1		1	RNASEH1	2	3596657	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1116	3596657	239602716	2627	10778											
RNASEH1	246243	broad.mit.edu	37	chr2	3596695	3596695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcccaggaagtctaatgcCtacatttctgtttcaaaaca	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3596695	A	A	3596695	3	1	9	1	0	0	0	0	1	0	0	0	13522	681	24	2	359	2	RNASEH1	2	3596695	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	3596695	239602678	2628	10779											
RNASEH1	246243	broad.mit.edu	37	chr2	3604393	3604393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactaccttctgaaacttccGggcttgcagatttcctgaca	8	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3604393	T	T	3604393	3	4	9	1	0	0	0	0	1	0	0	0	13522	1116	39	1	658	1	RNASEH1	2	3604393	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7698	3604393	239594980	2629	10780											
RPS7	6201	broad.mit.edu	37	chr2	3624124	3624124	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctatcataatctttgttccCgttcctcaactgaaatcttt	4	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3624124	A	A	3624124	2	1	9	1	0	0	0	0	0	0	0	1	13771	639	23	1		1	RPS7	2	3624124	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19731	3624124	239575249	2630	10781											
CMPK2	129607	broad.mit.edu	37	chr2	6991641	6991641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtcttctccatgcccCggccctgcagcctctgcaac	8	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6991641	A	A	6991641	3	1	9	1	0	0	0	0	1	0	0	0	3613	652	23	1	191	1	CMPK2	2	6991641	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3367517	6991641	236207732	2631	10782											
RNF144A	9781	broad.mit.edu	37	chr2	7170215	7170215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatactcaccgaactgagcaGgaaccactcgttcatgccgt	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7170215	T	T	7170215	1	4	9	0	1	0	0	0	0	0	0	0	13556	1015	35	2		2	RNF144A	2	7170215	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	178574	7170215	236029158	2632	10783											
KIDINS220	57498	broad.mit.edu	37	chr2	8871912	8871912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctgatgaactctgaccCatgtaatatgtgctatgtgg	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8871912	A	A	8871912	3	1	9	1	0	0	0	0	1	0	0	0	8341	594	21	2	1065	2	KIDINS220	2	8871912	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1701697	8871912	234327461	2633	10784											
KIDINS220	57498	broad.mit.edu	37	chr2	8919169	8919169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatttatatttgaatccCgaagcacactattgaggttc	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8919169	A	A	8919169	3	1	9	1	0	0	0	0	1	0	0	0	8341	652	23	1	2892	1	KIDINS220	2	8919169	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47257	8919169	234280204	2634	10785											
KIDINS220	57498	broad.mit.edu	37	chr2	8957756	8957756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtccataccatatcacGgtgctccaagttaaccccac	5	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8957756	T	T	8957756	3	4	9	1	0	0	0	0	1	0	0	0	8341	1116	39	1	5125	1	KIDINS220	2	8957756	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38587	8957756	234241617	2635	10786											
MBOAT2	129642	broad.mit.edu	37	chr2	9004330	9004330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagctgtctgaatattcCaattatcaagaaacatcttg	6	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9004330	A	A	9004330	3	1	9	1	0	0	0	0	1	0	0	0	9450	595	21	2	556	2	MBOAT2	2	9004330	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46574	9004330	234195043	2636	10787											
ASAP2	8853	broad.mit.edu	37	chr2	9463303	9463303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagctccatgggatgattcGgactgaaataagcggagcgg	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9463303	T	T	9463303	3	4	9	1	0	0	0	0	1	0	0	0	1015	1116	39	1	546	1	ASAP2	2	9463303	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	458973	9463303	233736070	2637	10788											
ASAP2	8853	broad.mit.edu	37	chr2	9498929	9498929	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggcatcctgacctgcatcGagtgttccggaatccaccga	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9498929	T	T	9498929	4	4	9	1	0	0	0	0	0	1	0	0	1015	1059	37	3	1430	3	ASAP2	2	9498929	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35626	9498929	233700444	2638	10789											
ITGB1BP1	9270	broad.mit.edu	37	chr2	9558784	9558784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtactgatttcgctactttGggaactgctactactgtgtc	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9558784	T	T	9558784	3	4	9	1	0	0	0	0	1	0	0	0	7961	1357	47	2	583	2	ITGB1BP1	2	9558784	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59855	9558784	233640589	2639	10790											
CPSF3	51692	broad.mit.edu	37	chr2	9582075	9582075	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatggtgtcattatagcGggatactgtgtagaagggac	15	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9582075	T	T	9582075	2	4	9	1	0	0	0	0	0	0	0	1	3858	1103	39	1		1	CPSF3	2	9582075	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23291	9582075	233617298	2640	10791											
IAH1	285148	broad.mit.edu	37	chr2	9628403	9628403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctgcttccttactggcGggatgtagcagaagcaaaac	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9628403	T	T	9628403	3	4	9	1	0	0	0	0	1	0	0	0	7541	1116	39	1	714	1	IAH1	2	9628403	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46328	9628403	233570970	2641	10792											
ADAM17	6868	broad.mit.edu	37	chr2	9637279	9637279	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccagctgctgttccctctCgcagaaagggatgcatttcc	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9637279	A	A	9637279	4	1	9	1	0	0	0	0	0	1	0	0	238	893	31	3	751	3	ADAM17	2	9637279	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8876	9637279	233562094	2642	10793											
ADAM17	6868	broad.mit.edu	37	chr2	9637300	9637300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaagggatgcatttccCatccttacacttgccaagat	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9637300	A	A	9637300	3	1	9	1	0	0	0	0	1	0	0	0	238	594	21	2	772	2	ADAM17	2	9637300	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	9637300	233562073	2643	10794											
GRHL1	29841	broad.mit.edu	37	chr2	10101441	10101441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctgagcccactgagcGggtggtggttttcgatcgga	14	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10101441	T	T	10101441	3	4	9	1	0	0	0	0	1	0	0	0	6829	1116	39	1	559	1	GRHL1	2	10101441	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	464141	10101441	233097932	2644	10795											
GRHL1	29841	broad.mit.edu	37	chr2	10136077	10136077	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttctaccaagctggccCggatagaagaaccaaagaga	9	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10136077	A	A	10136077	2	1	9	1	0	0	0	0	0	0	0	1	6829	643	23	1		1	GRHL1	2	10136077	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34636	10136077	233063296	2645	10796											
GRHL1	29841	broad.mit.edu	37	chr2	10136571	10136571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccctgtacaaaatgaaaGgacaagtacataggatttca	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10136571	T	T	10136571	1	4	9	0	1	0	0	0	0	0	0	0	6829	1015	35	2		2	GRHL1	2	10136571	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	494	10136571	233062802	2646	10797											
GRHL1	29841	broad.mit.edu	37	chr2	10140800	10140800	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcagattgaagaagccGgggggtcttacaagctcacc	13	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10140800	T	T	10140800	3	4	9	1	0	0	0	0	1	0	0	0	6829	1116	39	1	1884	1	GRHL1	2	10140800	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4229	10140800	233058573	2647	10798											
RRM2	6241	broad.mit.edu	37	chr2	10263601	10263601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttccccatcgagtacCatgatatctggcagatgtat	7	11	3	2	rs72542791		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10263601	A	A	10263601	3	1	9	1	0	0	0	0	1	0	0	0	13793	594	21	2	452	2	RRM2	2	10263601	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122801	10263601	232935772	2648	10799											
C2orf48	348738	broad.mit.edu	37	chr2	10282396	10282396	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaggggatgagaagctcGggaaggtctgaccagcctta	14	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10282396	T	T	10282396	2	4	9	1	0	0	0	0	0	0	0	1	2192	1103	39	1		1	C2orf48	2	10282396	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18795	10282396	232916977	2649	10800											
ODC1	4953	broad.mit.edu	37	chr2	10580955	10580955	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcctgttcctctacttcGggtgggaagtcggggttctg	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10580955	T	T	10580955	2	4	9	1	0	0	0	0	0	0	0	1	10920	1103	39	1		1	ODC1	2	10580955	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	298559	10580955	232618418	2650	10801											
ODC1	4953	broad.mit.edu	37	chr2	10582148	10582148	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatacataccatcagagccCgtctgttcctttaatacaat	4	11	2	1	rs142575004		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10582148	A	A	10582148	2	1	9	1	0	0	0	0	0	0	0	1	10920	639	23	1		1	ODC1	2	10582148	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1193	10582148	232617225	2651	10802											
ODC1	4953	broad.mit.edu	37	chr2	10584189	10584189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacatatcttatgctccCgatcttgccctcagatgggg	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10584189	A	A	10584189	1	1	9	0	1	0	0	0	0	0	0	0	10920	667	23	1		1	ODC1	2	10584189	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2041	10584189	232615184	2652	10803											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10922410	10922410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcagtgctcctgcagcCgcataagaagtcatccacca	9	15	1	1	rs142915630		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10922410	A	A	10922410	3	1	9	1	0	0	0	0	1	0	0	0	1185	652	23	1	1149	1	ATP6V1C2	2	10922410	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	338221	10922410	232276963	2653	10804											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10923317	10923317	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcatctgtggagatcccGggactgcaactcaataacca	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10923317	T	T	10923317	2	4	9	1	0	0	0	0	0	0	0	1	1185	1103	39	1		1	ATP6V1C2	2	10923317	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	907	10923317	232276056	2654	10805											
PDIA6	10130	broad.mit.edu	37	chr2	10924447	10924447	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaatgtcatcctccacGggaagctgggagacgacaga	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10924447	T	T	10924447	2	4	9	1	0	0	0	0	0	0	0	1	11766	1103	39	1		1	PDIA6	2	10924447	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1130	10924447	232274926	2655	10806											
PDIA6	10130	broad.mit.edu	37	chr2	10929925	10929925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaacaaatcaagggcccGggacacgatgtcggatcttg	12	9	2	1	rs149489060		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10929925	T	T	10929925	2	4	9	1	0	0	0	0	0	0	0	1	11766	1115	39	1		1	PDIA6	2	10929925	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5478	10929925	232269448	2656	10807											
ROCK2	9475	broad.mit.edu	37	chr2	11354625	11354625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttaaaacattaaaccCacaaagtatatacattcaat	1	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11354625	A	A	11354625	1	1	9	0	1	0	0	0	0	0	0	0	13629	609	21	2		2	ROCK2	2	11354625	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	424700	11354625	231844748	2657	10808											
E2F6	1876	broad.mit.edu	37	chr2	11590127	11590127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatctttttaaaaatgcaGggttacctacttctctggga	7	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11590127	T	T	11590127	1	4	9	0	1	0	0	0	0	0	0	0	4911	1015	35	2		2	E2F6	2	11590127	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	235502	11590127	231609246	2658	10809											
E2F6	1876	broad.mit.edu	37	chr2	11593786	11593786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgatgtcatacactctcCgctttcggactcccagtttc	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11593786	A	A	11593786	3	1	9	1	0	0	0	0	1	0	0	0	4911	652	23	1	563	1	E2F6	2	11593786	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3659	11593786	231605587	2659	10810											
E2F6	1876	broad.mit.edu	37	chr2	11593838	11593838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaagtcaagaataccccCgggagcagatctgacaagat	10	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11593838	A	A	11593838	3	1	9	1	0	0	0	0	1	0	0	0	4911	652	23	1	615	1	E2F6	2	11593838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	11593838	231605535	2660	10811											
GREB1	9687	broad.mit.edu	37	chr2	11738119	11738119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaggtatggggcattttGgggagaagtcacgtgtggag	17	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11738119	T	T	11738119	1	4	9	0	1	0	0	0	0	0	0	0	6826	1363	47	2		2	GREB1	2	11738119	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	144281	11738119	231461254	2661	10812											
GREB1	9687	broad.mit.edu	37	chr2	11740961	11740961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctattctcaaagtgaccCgtcggtgggattggtggacc	12	11	2	1	rs76644468	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11740961	A	A	11740961	3	1	9	1	0	0	0	0	1	0	0	0	6826	652	23	1	2535	1	GREB1	2	11740961	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2842	11740961	231458412	2662	10813											
GREB1	9687	broad.mit.edu	37	chr2	11761089	11761089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtccaggatgcttgttcGgctcacagaagtggatgtct	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11761089	T	T	11761089	3	4	9	1	0	0	0	0	1	0	0	0	6826	1116	39	1	4297	1	GREB1	2	11761089	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20128	11761089	231438284	2663	10814											
GREB1	9687	broad.mit.edu	37	chr2	11765382	11765382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactacatcattcacgaccCgaagtatgaagatgccagcc	8	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11765382	A	A	11765382	3	1	9	1	0	0	0	0	1	0	0	0	6826	652	23	1	4448	1	GREB1	2	11765382	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4293	11765382	231433991	2664	10815											
GREB1	9687	broad.mit.edu	37	chr2	11778850	11778850	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttaaacatcagctgctcGgacttgctgttcagtgggct	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11778850	T	T	11778850	2	4	9	1	0	0	0	0	0	0	0	1	6826	1103	39	1		1	GREB1	2	11778850	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13468	11778850	231420523	2665	10816											
LPIN1	23175	broad.mit.edu	37	chr2	11905776	11905776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattgacatcattgtcatcCgccagcccaatggaaacctc	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11905776	A	A	11905776	3	1	9	1	0	0	0	0	1	0	0	0	9005	652	23	1	111	1	LPIN1	2	11905776	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126926	11905776	231293597	2666	10817											
LPIN1	23175	broad.mit.edu	37	chr2	11942923	11942923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgaccacccgagagacGggactcaggagagactggat	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11942923	T	T	11942923	1	4	9	0	1	0	0	0	0	0	0	0	9005	1131	39	1		1	LPIN1	2	11942923	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37147	11942923	231256450	2667	10818											
TRIB2	28951	broad.mit.edu	37	chr2	12864695	12864695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttattaacaaactgagaaGgggcagctgttggaagattt	11	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12864695	T	T	12864695	1	4	9	0	1	0	0	0	0	0	0	0	16607	1015	35	2		2	TRIB2	2	12864695	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	921772	12864695	230334678	2668	10819											
TRIB2	28951	broad.mit.edu	37	chr2	12864789	12864789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcctggagatgtttcccCtggttttgccttcgataccc	11	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12864789	A	A	12864789	1	1	9	0	1	0	0	0	0	0	0	0	16607	696	24	2		2	TRIB2	2	12864789	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	12864789	230334584	2669	10820											
NBAS	51594	broad.mit.edu	37	chr2	15467851	15467851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagagttacacactgtcaaGggactagaaccttctctctt	7	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15467851	T	T	15467851	1	4	9	0	1	0	0	0	0	0	0	0	10280	1015	35	2		2	NBAS	2	15467851	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2603062	15467851	227731522	2670	10821											
NBAS	51594	broad.mit.edu	37	chr2	15514756	15514756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggcaggatctttacccCaaattcttcaagacatccaa	5	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15514756	A	A	15514756	3	1	9	1	0	0	0	0	1	0	0	0	10280	594	21	2	3524	2	NBAS	2	15514756	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46905	15514756	227684617	2671	10822											
NBAS	51594	broad.mit.edu	37	chr2	15555627	15555627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaacctaatactgtagGggaaaaagtgcccagaattt	8	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15555627	T	T	15555627	1	4	9	0	1	0	0	0	0	0	0	0	10280	1247	43	2		2	NBAS	2	15555627	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	40871	15555627	227643746	2672	10823											
DDX1	1653	broad.mit.edu	37	chr2	15757391	15757391	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatagttgtaggtactccGggaagactagatgacttggt	13	5	0	3	rs150852999		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15757391	T	T	15757391	2	4	9	1	0	0	0	0	0	0	0	1	4374	1103	39	1		1	DDX1	2	15757391	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	201764	15757391	227441982	2673	10824											
FAM49A	81553	broad.mit.edu	37	chr2	16743329	16743329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcggcaaactcctttgccaGggcctgttccctttccaggt	9	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16743329	T	T	16743329	3	4	9	1	0	0	0	0	1	0	0	0	5626	991	35	2	620	2	FAM49A	2	16743329	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	985938	16743329	226456044	2674	10825											
FAM49A	81553	broad.mit.edu	37	chr2	16747011	16747011	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatctggttccagatttctCtctctccttctgtaggctga	8	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16747011	A	A	16747011	3	1	9	1	0	0	0	0	1	0	0	0	5626	913	32	3	912	3	FAM49A	2	16747011	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3682	16747011	226452362	2675	10826											
VSNL1	7447	broad.mit.edu	37	chr2	17830722	17830722	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgcccagcatgccttcCgaaccttcgacaagaatggg	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17830722	A	A	17830722	2	1	9	1	0	0	0	0	0	0	0	1	17354	644	23	1		1	VSNL1	2	17830722	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1083711	17830722	225368651	2676	10827											
SMC6	79677	broad.mit.edu	37	chr2	17846825	17846825	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggcaatgtagtttgtcCtctttcaggatcagacattc	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17846825	A	A	17846825	4	1	9	1	0	0	0	0	0	1	0	0	14901	690	24	2	62	2	SMC6	2	17846825	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16103	17846825	225352548	2677	10828											
SMC6	79677	broad.mit.edu	37	chr2	17902254	17902254	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagcagcacgatcttctcCaattttgatattatctctga	5	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17902254	A	A	17902254	4	1	9	1	0	0	0	0	0	1	0	0	14901	603	21	2	2449	2	SMC6	2	17902254	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55429	17902254	225297119	2678	10829											
GEN1	348654	broad.mit.edu	37	chr2	17963159	17963159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtacttgtttggatagcCctcttcctttacgccagaga	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17963159	A	A	17963159	3	1	9	1	0	0	0	0	1	0	0	0	6399	623	22	2	2730	2	GEN1	2	17963159	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60905	17963159	225236214	2679	10830											
KCNS3	3790	broad.mit.edu	37	chr2	18112979	18112979	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcattgcctggttcaccgGggagcttgccgtccggctgg	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18112979	C	C	18112979	3	2	9	1	0	0	0	0	1	0	0	0	8160	1232	43	4	706	4	KCNS3	2	18112979	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149820	18112979	225086394	2680	10831											
NT5C1B	93034	broad.mit.edu	37	chr2	18770694	18770694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagattctaagacactcGgttcactcacctttttctgt	7	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18770694	T	T	18770694	1	4	9	0	1	0	0	0	0	0	0	0	10781	1131	39	1		1	NT5C1B	2	18770694	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	657715	18770694	224428679	2681	10832											
WDR35	57539	broad.mit.edu	37	chr2	20145669	20145669	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaattttaacaactctcCaactacttgctgtcccgtac	3	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20145669	A	A	20145669	4	1	9	1	0	0	0	0	0	1	0	0	17416	603	21	2	1837	2	WDR35	2	20145669	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1374975	20145669	223053704	2682	10833											
PUM2	23369	broad.mit.edu	37	chr2	20451438	20451438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggccagtatatgcttccCgtatgtgtatttgcgcaaag	10	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20451438	A	A	20451438	3	1	9	1	0	0	0	0	1	0	0	0	12934	652	23	1	95	1	PUM2	2	20451438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	305769	20451438	222747935	2683	10834											
PUM2	23369	broad.mit.edu	37	chr2	20463219	20463219	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accactaccatttgtcagtcCtcctacaacaaagcagctat	4	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20463219	A	A	20463219	4	1	9	1	0	0	0	0	0	1	0	0	12934	690	24	2	1266	2	PUM2	2	20463219	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11781	20463219	222736154	2684	10835											
PUM2	23369	broad.mit.edu	37	chr2	20494294	20494294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacctaaaccccacaccCgacccccgaataaaaagtta	5	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20494294	A	A	20494294	1	1	9	0	1	0	0	0	0	0	0	0	12934	667	23	1		1	PUM2	2	20494294	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31075	20494294	222705079	2685	10836											
HS1BP3	64342	broad.mit.edu	37	chr2	20845121	20845121	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaactggacgacatcctcGggcctgtgcttggccgactt	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20845121	T	T	20845121	2	4	9	1	0	0	0	0	0	0	0	1	7428	1103	39	1		1	HS1BP3	2	20845121	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	350827	20845121	222354252	2686	10837											
APOB	338	broad.mit.edu	37	chr2	21224686	21224686	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctttttcagtaactcCgtgatgtatatcagaaatgt	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21224686	A	A	21224686	2	1	9	1	0	0	0	0	0	0	0	1	787	639	23	1		1	APOB	2	21224686	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	379565	21224686	221974687	2687	10838											
APOB	338	broad.mit.edu	37	chr2	21226170	21226170	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agattcccggaccctcaactCagttttgaatatggtgagtt	9	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21226170	A	A	21226170	4	1	9	1	0	0	0	0	0	1	0	0	787	835	29	3	1571	3	APOB	2	21226170	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1484	21226170	221973203	2688	10839											
APOB	338	broad.mit.edu	37	chr2	21227319	21227319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtgcgcttttccttccCattccctgaaagcagaaaaa	8	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21227319	A	A	21227319	3	1	9	1	0	0	0	0	1	0	0	0	787	595	21	2	1790	2	APOB	2	21227319	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1149	21227319	221972054	2689	10840											
APOB	338	broad.mit.edu	37	chr2	21228064	21228064	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaagtggcattatacacGggagagtctacctcaaagcg	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21228064	T	T	21228064	2	4	9	1	0	0	0	0	0	0	0	1	787	1103	39	1		1	APOB	2	21228064	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	745	21228064	221971309	2690	10841											
APOB	338	broad.mit.edu	37	chr2	21231093	21231093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttagtgttgctatccaGggtaagctgattgtttatct	10	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21231093	T	T	21231093	3	4	9	1	0	0	0	0	1	0	0	0	787	991	35	2	5060	2	APOB	2	21231093	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3029	21231093	221968280	2691	10842											
APOB	338	broad.mit.edu	37	chr2	21231229	21231229	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatttcactcccatgctcCgttctcaggtacttgctgga	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21231229	A	A	21231229	2	1	9	1	0	0	0	0	0	0	0	1	787	639	23	1		1	APOB	2	21231229	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	136	21231229	221968144	2692	10843											
APOB	338	broad.mit.edu	37	chr2	21234035	21234035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgatggtcatggtaaacGgggccattacagaacggaag	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21234035	T	T	21234035	3	4	9	1	0	0	0	0	1	0	0	0	787	1116	39	1	8002	1	APOB	2	21234035	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2806	21234035	221965338	2693	10844											
APOB	338	broad.mit.edu	37	chr2	21234246	21234246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttttatttcattattttGgtaggctccttttaggttac	8	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21234246	T	T	21234246	3	4	9	1	0	0	0	0	1	0	0	0	787	1357	47	2	8213	2	APOB	2	21234246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	211	21234246	221965127	2694	10845											
APOB	338	broad.mit.edu	37	chr2	21242677	21242677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaggtgcagtaattcaGgccaggaaagacttgcttgc	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21242677	T	T	21242677	3	4	9	1	0	0	0	0	1	0	0	0	787	991	35	2	10818	2	APOB	2	21242677	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8431	21242677	221956696	2695	10846											
APOB	338	broad.mit.edu	37	chr2	21252643	21252643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgctccatggtttggccCatatttccaatgacctgcat	7	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21252643	A	A	21252643	3	1	9	1	0	0	0	0	1	0	0	0	787	594	21	2	12278	2	APOB	2	21252643	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9966	21252643	221946730	2696	10847											
ATAD2B	54454	broad.mit.edu	37	chr2	24090760	24090760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcttgcacccactttcactCgttctcggagaataccgcta	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24090760	A	A	24090760	3	1	9	1	0	0	0	0	1	0	0	0	1076	884	31	3	3319	3	ATAD2B	2	24090760	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2838117	24090760	219108613	2697	10848											
UBXN2A	165324	broad.mit.edu	37	chr2	24194266	24194266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttccaaatgtgtgtctccCgctgaacagaagaaacaggt	10	9	1	3	rs142297419		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24194266	A	A	24194266	2	1	9	1	0	0	0	0	0	0	0	1	17040	639	23	1		1	UBXN2A	2	24194266	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	103506	24194266	219005107	2698	10849											
MFSD2B	388931	broad.mit.edu	37	chr2	24246123	24246123	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccctggtaggctgggtgtGggggcctcacgtgtgtccac	16	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24246123	T	T	24246123	1	4	9	0	1	0	0	0	0	0	0	0	9624	1363	47	2		2	MFSD2B	2	24246123	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51857	24246123	218953250	2699	10850											
MFSD2B	388931	broad.mit.edu	37	chr2	24246571	24246571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtctggcgcatgtgccCtgggcatctccaccctcagt	11	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24246571	A	A	24246571	3	1	9	1	0	0	0	0	1	0	0	0	9624	680	24	2	1334	2	MFSD2B	2	24246571	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	448	24246571	218952802	2700	10851											
C2orf44	80304	broad.mit.edu	37	chr2	24261004	24261004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatttgctttatttaacGgagcactgaaagtagagtag	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24261004	T	T	24261004	3	4	9	1	0	0	0	0	1	0	0	0	2190	1116	39	1	816	1	C2orf44	2	24261004	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14433	24261004	218938369	2701	10852											
SF3B14	51639	broad.mit.edu	37	chr2	24299060	24299060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccctccgcagaacaccCgatactcacgttcgccctct	5	21	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24299060	A	A	24299060	1	1	9	0	1	0	0	0	0	0	0	0	14263	667	23	1		1	SF3B14	2	24299060	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38056	24299060	218900313	2702	10853											
TP53I3	9540	broad.mit.edu	37	chr2	24303824	24303824	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatagctccagccatccGggtgagttggatagcagctg	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24303824	T	T	24303824	2	4	9	1	0	0	0	0	0	0	0	1	16511	1115	39	1		1	TP53I3	2	24303824	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4764	24303824	218895549	2703	10854											
TP53I3	9540	broad.mit.edu	37	chr2	24303849	24303849	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggatagcagctgtgccCacaccactcagtcctgcatg	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24303849	A	A	24303849	2	1	9	1	0	0	0	0	0	0	0	1	16511	581	21	2		2	TP53I3	2	24303849	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	24303849	218895524	2704	10855											
ITSN2	50618	broad.mit.edu	37	chr2	24431137	24431137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcacgcttcttcttctcGgtgtcgatgtactgctcaga	8	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24431137	T	T	24431137	2	4	9	1	0	0	0	0	0	0	0	1	7997	1103	39	1		1	ITSN2	2	24431137	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	127288	24431137	218768236	2705	10856											
ITSN2	50618	broad.mit.edu	37	chr2	24432845	24432845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtcttgtataatttccCactgtgtaagagcttccggg	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24432845	A	A	24432845	3	1	9	1	0	0	0	0	1	0	0	0	7997	594	21	2	802	2	ITSN2	2	24432845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1708	24432845	218766528	2706	10857											
ITSN2	50618	broad.mit.edu	37	chr2	24469706	24469706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctttcactacttggaccCaaaagtttaacatgactggc	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24469706	A	A	24469706	3	1	9	1	0	0	0	0	1	0	0	0	7997	593	21	2	1851	2	ITSN2	2	24469706	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36861	24469706	218729667	2707	10858											
ITSN2	50618	broad.mit.edu	37	chr2	24471769	24471769	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctacaaggaaaagatacCgtgttgttttattatttcca	6	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24471769	A	A	24471769	1	1	9	0	1	0	0	0	0	0	0	0	7997	667	23	1		1	ITSN2	2	24471769	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2063	24471769	218727604	2708	10859											
ITSN2	50618	broad.mit.edu	37	chr2	24507709	24507709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagagtcatccatattccCacactgtaagataaggcaga	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24507709	A	A	24507709	3	1	9	1	0	0	0	0	1	0	0	0	7997	594	21	2	3373	2	ITSN2	2	24507709	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35940	24507709	218691664	2709	10860											
ITSN2	50618	broad.mit.edu	37	chr2	24533238	24533238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagactataagatgaccCatgaggcaatgctaaaaaag	8	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24533238	A	A	24533238	3	1	9	1	0	0	0	0	1	0	0	0	7997	594	21	2	4712	2	ITSN2	2	24533238	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25529	24533238	218666135	2710	10861											
NCOA1	8648	broad.mit.edu	37	chr2	24964690	24964690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttggcacaacgtcagcGggaactgtacagtcaacagc	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24964690	T	T	24964690	3	4	9	1	0	0	0	0	1	0	0	0	10323	1116	39	1	3399	1	NCOA1	2	24964690	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	431452	24964690	218234683	2711	10862											
CENPO	79172	broad.mit.edu	37	chr2	25039419	25039419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgaaatgtaatcgatGggcctctttttggttgacgt	10	7	2	2	rs113566002		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25039419	T	T	25039419	1	4	9	0	1	0	0	0	0	0	0	0	3269	1363	47	2		2	CENPO	2	25039419	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	74729	25039419	218159954	2712	10863											
CENPO	79172	broad.mit.edu	37	chr2	25039539	25039539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgcagccctcctgactGggcccttgcagagaaaccca	9	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25039539	T	T	25039539	3	4	9	1	0	0	0	0	1	0	0	0	3269	1348	47	2	637	2	CENPO	2	25039539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	120	25039539	218159834	2713	10864											
ADCY3	109	broad.mit.edu	37	chr2	25044360	25044360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggaagggagcctgctgcGgggcaggccagctgggggtg	22	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25044360	T	T	25044360	1	4	9	0	1	0	0	0	0	0	0	0	295	1131	39	1		1	ADCY3	2	25044360	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4821	25044360	218155013	2714	10865											
ADCY3	109	broad.mit.edu	37	chr2	25045318	25045318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcccccatgctaggtctGggctgccaatctcttgcctt	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25045318	T	T	25045318	1	4	9	0	1	0	0	0	0	0	0	0	295	1363	47	2		2	ADCY3	2	25045318	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	958	25045318	218154055	2715	10866											
ADCY3	109	broad.mit.edu	37	chr2	25045339	25045339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgccaatctcttgccttGggggcagagcctcatctctc	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25045339	T	T	25045339	1	4	9	0	1	0	0	0	0	0	0	0	295	1363	47	2		2	ADCY3	2	25045339	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	25045339	218154034	2716	10867											
DNMT3A	1788	broad.mit.edu	37	chr2	25462010	25462010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccaacctgttcataccGggaaggttaccccagaagta	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25462010	T	T	25462010	2	4	9	1	0	0	0	0	0	0	0	1	4716	1103	39	1		1	DNMT3A	2	25462010	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	416671	25462010	217737363	2717	10868											
DNMT3A	1788	broad.mit.edu	37	chr2	25468050	25468050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtacatgcccagaagcGgtggacacagtcagccagaa	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25468050	T	T	25468050	1	4	9	0	1	0	0	0	0	0	0	0	4716	1131	39	1		1	DNMT3A	2	25468050	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6040	25468050	217731323	2718	10869											
DNMT3A	1788	broad.mit.edu	37	chr2	25469063	25469063	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaataatctccttgaccttGggcttctccgctgtgctctt	7	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25469063	T	T	25469063	2	4	9	1	0	0	0	0	0	0	0	1	4716	1335	47	2		2	DNMT3A	2	25469063	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1013	25469063	217730310	2719	10870											
DNMT3A	1788	broad.mit.edu	37	chr2	25497841	25497841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgccagccactcgtccCgcttgcgcttgctgatgtag	12	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25497841	A	A	25497841	3	1	9	1	0	0	0	0	1	0	0	0	4716	652	23	1	2282	1	DNMT3A	2	25497841	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28778	25497841	217701532	2720	10871											
ASXL2	55252	broad.mit.edu	37	chr2	25966318	25966318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcagaatttgctccatgGgaacatctttgccttgaagc	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25966318	T	T	25966318	3	4	9	1	0	0	0	0	1	0	0	0	1071	1232	43	2	1423	2	ASXL2	2	25966318	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	468477	25966318	217233055	2721	10872											
ASXL2	55252	broad.mit.edu	37	chr2	25973061	25973061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagatgtggagaagttcGgctgcacttcaccttggctt	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25973061	T	T	25973061	3	4	9	1	0	0	0	0	1	0	0	0	1071	1116	39	1	2951	1	ASXL2	2	25973061	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6743	25973061	217226312	2722	10873											
ASXL2	55252	broad.mit.edu	37	chr2	25973143	25973143	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctttacactctgactGggagactactggaactattc	7	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25973143	C	C	25973143	3	2	9	1	0	0	0	0	1	0	0	0	1071	1357	47	4	3033	4	ASXL2	2	25973143	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82	25973143	217226230	2723	10874											
ASXL2	55252	broad.mit.edu	37	chr2	25991611	25991611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgcccaaactgcctacCaggtttggcaggtacagagt	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25991611	A	A	25991611	3	1	9	1	0	0	0	0	1	0	0	0	1071	608	21	2	3704	2	ASXL2	2	25991611	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18468	25991611	217207762	2724	10875											
KIF3C	3797	broad.mit.edu	37	chr2	26204390	26204390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactgttggttctgggagcGggagatgtgggtgaagatgt	19	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26204390	T	T	26204390	3	4	9	1	0	0	0	0	1	0	0	0	8372	1116	39	1	2016	1	KIF3C	2	26204390	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	212779	26204390	216994983	2725	10876											
RAB10	10890	broad.mit.edu	37	chr2	26257650	26257650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtctcggtagctgcatacCgtttattttactccagacat	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26257650	A	A	26257650	1	1	9	0	1	0	0	0	0	0	0	0	12998	667	23	1		1	RAB10	2	26257650	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53260	26257650	216941723	2726	10877											
HADHA	3030	broad.mit.edu	37	chr2	26426892	26426892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaactaaccaagaaacaaaGgacattctaactcttgcaaa	4	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26426892	T	T	26426892	1	4	9	0	1	0	0	0	0	0	0	0	7009	1015	35	2		2	HADHA	2	26426892	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	169242	26426892	216772481	2727	10878			11	14		4	4	120	N	G_C	5.103477e-05
HADHA	3030	broad.mit.edu	37	chr2	26426932	26426932	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagagagcaggcttaccCtttgaacacttgttgctgtc	11	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26426932	A	A	26426932	4	1	9	1	0	0	0	0	0	1	0	0	7009	695	24	2	1108	2	HADHA	2	26426932	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	26426932	216772441	2728	10879			11	14		4	4	120	N	G_C	5.103477e-05
HADHA	3030	broad.mit.edu	37	chr2	26426956	26426956	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacacttgttgctgtcctcGgtctagcgcagtgagggtgg	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26426956	T	T	26426956	2	4	9	1	0	0	0	0	0	0	0	1	7009	1124	39	1		1	HADHA	2	26426956	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	26426956	216772417	2729	10880			11	14		4	4	120	N	G_C	5.103477e-05
HADHA	3030	broad.mit.edu	37	chr2	26427011	26427011	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttagccccttatccacGgagacttgggcgatgcctgc	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26427011	T	T	26427011	2	4	9	1	0	0	0	0	0	0	0	1	7009	1103	39	1		1	HADHA	2	26427011	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55	26427011	216772362	2730	10881			11	14		4	4	120	N	G_C	5.103477e-05
OTOF	9381	broad.mit.edu	37	chr2	26680838	26680838	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggctccccaggggagatGggaaagagtccaagccactg	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26680838	C	C	26680838	1	2	9	0	1	0	0	0	0	0	0	0	11397	1363	47	4		4	OTOF	2	26680838	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	253827	26680838	216518535	2731	10882											
TMEM214	54867	broad.mit.edu	37	chr2	27262685	27262685	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtgccaagctctactcCtacagtctgcaaggctacag	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27262685	A	A	27262685	2	1	9	1	0	0	0	0	0	0	0	1	16260	668	24	2		2	TMEM214	2	27262685	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	581847	27262685	215936688	2732	10883											
AGBL5	60509	broad.mit.edu	37	chr2	27278871	27278871	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatgccacaacagtctgcGgggcttgaagagtcagcccc	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27278871	T	T	27278871	2	4	9	1	0	0	0	0	0	0	0	1	378	1103	39	1		1	AGBL5	2	27278871	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16186	27278871	215920502	2733	10884											
ABHD1	84696	broad.mit.edu	37	chr2	27353581	27353581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgcctgacctcagggCtctcttaccttctgaggaca	12	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27353581	A	A	27353581	3	1	9	1	0	0	0	0	1	0	0	0	73	797	28	3	1221	3	ABHD1	2	27353581	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74710	27353581	215845792	2734	10885											
PREB	10113	broad.mit.edu	37	chr2	27356072	27356072	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaactttctgcagtggatcGgagctaaagtctgtctgcac	10	10	3	0	rs35998342	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27356072	T	T	27356072	2	4	9	1	0	0	0	0	0	0	0	1	12576	1103	39	1		1	PREB	2	27356072	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2491	27356072	215843301	2735	10886											
TCF23	150921	broad.mit.edu	37	chr2	27375691	27375691	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccctggagaggcagatgctCtcctttccaccacaccactc	7	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27375691	A	A	27375691	3	1	9	1	0	0	0	0	1	0	0	0	15814	913	32	3	611	3	TCF23	2	27375691	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19619	27375691	215823682	2736	10887											
SLC5A6	8884	broad.mit.edu	37	chr2	27427720	27427720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgagcctggttcacccCgtataaggagagcatcatga	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27427720	A	A	27427720	3	1	9	1	0	0	0	0	1	0	0	0	14783	652	23	1	1133	1	SLC5A6	2	27427720	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52029	27427720	215771653	2737	10888											
SLC5A6	8884	broad.mit.edu	37	chr2	27429779	27429779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtcacagttccacacactCgcacagttttattgaatcga	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27429779	A	A	27429779	3	1	9	1	0	0	0	0	1	0	0	0	14783	884	31	3	1538	3	SLC5A6	2	27429779	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2059	27429779	215769594	2738	10889											
CAD	790	broad.mit.edu	37	chr2	27446498	27446498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctgctttctgacatccCagaaccatgggtttgctgtg	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27446498	A	A	27446498	3	1	9	1	0	0	0	0	1	0	0	0	2591	595	21	2	903	2	CAD	2	27446498	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16719	27446498	215752875	2739	10890											
CAD	790	broad.mit.edu	37	chr2	27446891	27446891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgggaaccctgggggcCagacaggtaagatcctgagt	15	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27446891	A	A	27446891	3	1	9	1	0	0	0	0	1	0	0	0	2591	595	21	2	1132	2	CAD	2	27446891	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	393	27446891	215752482	2740	10891											
CAD	790	broad.mit.edu	37	chr2	27455500	27455500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttggctctggcgtctacCgtattggctctagcgttgaa	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27455500	A	A	27455500	3	1	9	1	0	0	0	0	1	0	0	0	2591	652	23	1	2900	1	CAD	2	27455500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8609	27455500	215743873	2741	10892											
CAD	790	broad.mit.edu	37	chr2	27457486	27457486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagtagccttggccacgcGggtcatcatgggggaagaag	15	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27457486	T	T	27457486	3	4	9	1	0	0	0	0	1	0	0	0	2591	1116	39	1	3809	1	CAD	2	27457486	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1986	27457486	215741887	2742	10893											
CAD	790	broad.mit.edu	37	chr2	27464102	27464102	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaaggatcaggtgcctGgggcagggaggatgggacca	17	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27464102	T	T	27464102	1	4	9	0	1	0	0	0	0	0	0	0	2591	1363	47	2		2	CAD	2	27464102	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6616	27464102	215735271	2743	10894											
DNAJC5G	285126	broad.mit.edu	37	chr2	27500694	27500694	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccttgcggtatcatccCgacaagaatccagggaatgc	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27500694	A	A	27500694	2	1	9	1	0	0	0	0	0	0	0	1	4692	639	23	1		1	DNAJC5G	2	27500694	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36592	27500694	215698679	2744	10895											
DNAJC5G	285126	broad.mit.edu	37	chr2	27503112	27503112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggatgaggtatgtaaacCgaaaggcagcaacagttatc	12	6	0	1	rs139857726	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27503112	A	A	27503112	1	1	9	0	1	0	0	0	0	0	0	0	4692	667	23	1		1	DNAJC5G	2	27503112	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2418	27503112	215696261	2745	10896											
GTF3C2	2976	broad.mit.edu	37	chr2	27552131	27552131	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattttccggtcactcccCgcagagacaaggaaatggct	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27552131	A	A	27552131	2	1	9	1	0	0	0	0	0	0	0	1	6938	639	23	1		1	GTF3C2	2	27552131	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49019	27552131	215647242	2746	10897											
GTF3C2	2976	broad.mit.edu	37	chr2	27560782	27560782	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaccccagccccctgtccCcaagtctcacaagtccttgg	6	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27560782	A	A	27560782	1	1	9	0	1	0	0	0	0	0	0	0	6938	638	22	2		2	GTF3C2	2	27560782	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8651	27560782	215638591	2747	10898											
PPM1G	5496	broad.mit.edu	37	chr2	27609147	27609147	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaaggcaacttcctcccCtagaaggaaaggaaggaagg	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27609147	A	A	27609147	5	1	9	1	0	0	0	0	0	0	1	0	12441	695	24	2	1482	2	PPM1G	2	27609147	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	48365	27609147	215590226	2748	10899											
NRBP1	29959	broad.mit.edu	37	chr2	27656742	27656742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggtgttgggaagctgccCgtgaggagagtatgttgggg	19	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27656742	A	A	27656742	1	1	9	0	1	0	0	0	0	0	0	0	10737	667	23	1		1	NRBP1	2	27656742	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47595	27656742	215542631	2749	10900											
NRBP1	29959	broad.mit.edu	37	chr2	27657335	27657335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaagtgctttgcctcccCaggtcatttttatcacagaa	7	10	2	1	rs55665451	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27657335	A	A	27657335	1	1	9	0	1	0	0	0	0	0	0	0	10737	609	21	2		2	NRBP1	2	27657335	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	593	27657335	215542038	2750	10901											
IFT172	26160	broad.mit.edu	37	chr2	27682695	27682695	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaatcgagccagctctacCgctgccagggagagaaaaga	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27682695	A	A	27682695	2	1	9	1	0	0	0	0	0	0	0	1	7627	666	23	1		1	IFT172	2	27682695	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25360	27682695	215516678	2751	10902											
IFT172	26160	broad.mit.edu	37	chr2	27688722	27688722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacctcggtctttccccCgccccgctccagacctataa	5	20	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27688722	A	A	27688722	3	1	9	1	0	0	0	0	1	0	0	0	7627	652	23	1	3657	1	IFT172	2	27688722	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6027	27688722	215510651	2752	10903											
IFT172	26160	broad.mit.edu	37	chr2	27700049	27700049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccaaaaggaattattctGggtttcagggattcagagaa	11	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27700049	T	T	27700049	1	4	9	0	1	0	0	0	0	0	0	0	7627	1363	47	2		2	IFT172	2	27700049	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11327	27700049	215499324	2753	10904											
IFT172	26160	broad.mit.edu	37	chr2	27708286	27708286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccatgttcatcatacaGcaagaccactcggtccactg	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27708286	T	T	27708286	3	4	9	1	0	0	0	0	1	0	0	0	7627	962	34	3	5313	3	IFT172	2	27708286	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8237	27708286	215491087	2754	10905											
GCKR	2646	broad.mit.edu	37	chr2	27728536	27728536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttactaacaagtggtctacGgggtcttcatcctctcccaa	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27728536	T	T	27728536	1	4	9	0	1	0	0	0	0	0	0	0	6356	1131	39	1		1	GCKR	2	27728536	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20250	27728536	215470837	2755	10906											
GCKR	2646	broad.mit.edu	37	chr2	27729594	27729594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcctgtgttcttctgtGgacatctctggcctctttgc	9	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27729594	T	T	27729594	1	4	9	0	1	0	0	0	0	0	0	0	6356	1363	47	2		2	GCKR	2	27729594	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1058	27729594	215469779	2756	10907											
GCKR	2646	broad.mit.edu	37	chr2	27729646	27729646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtcctgacctctgaccCattctcagtctggagaagaa	8	12	4	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27729646	A	A	27729646	1	1	9	0	1	0	0	0	0	0	0	0	6356	609	21	2		2	GCKR	2	27729646	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	27729646	215469727	2757	10908											
C2orf16	84226	broad.mit.edu	37	chr2	27805335	27805335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatcaaacaactctcctcGggaccacacataaaaatccc	4	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27805335	T	T	27805335	3	4	9	1	0	0	0	0	1	0	0	0	2179	1116	39	1	5898	1	C2orf16	2	27805335	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75689	27805335	215394038	2758	10909											
ZNF512	84450	broad.mit.edu	37	chr2	27824247	27824247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttacttgtcatcattgtGggaaacaacttcgttcactg	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27824247	T	T	27824247	3	4	9	1	0	0	0	0	1	0	0	0	18083	1348	47	2	633	2	ZNF512	2	27824247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18912	27824247	215375126	2759	10910											
ZNF512	84450	broad.mit.edu	37	chr2	27824271	27824271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaacttcgttcactggcaGggatgaagtatcatgtcatg	10	8	3	1	rs146010457		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27824271	T	T	27824271	3	4	9	1	0	0	0	0	1	0	0	0	18083	1000	35	2	657	2	ZNF512	2	27824271	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	27824271	215375102	2760	10911											
ZNF512	84450	broad.mit.edu	37	chr2	27844169	27844169	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctggcattgagcttccCgagacagagctgagtcttag	12	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27844169	A	A	27844169	2	1	9	1	0	0	0	0	0	0	0	1	18083	639	23	1		1	ZNF512	2	27844169	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19898	27844169	215355204	2761	10912											
CCDC121	79635	broad.mit.edu	37	chr2	27850588	27850588	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacaagtaacttttctcGgtgtagctccctggattcct	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27850588	T	T	27850588	2	4	9	1	0	0	0	0	0	0	0	1	2783	1124	39	1		1	CCDC121	2	27850588	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6419	27850588	215348785	2762	10913											
CCDC121	79635	broad.mit.edu	37	chr2	27850661	27850661	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatatgcttgttcagatcCgtcatttccgccactatctt	5	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27850661	A	A	27850661	2	1	9	1	0	0	0	0	0	0	0	1	2783	639	23	1		1	CCDC121	2	27850661	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	73	27850661	215348712	2763	10914											
GPN1	11321	broad.mit.edu	37	chr2	27862969	27862969	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactctttgtgcaagttacCagtgctgccgaagaatatga	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27862969	A	A	27862969	2	1	9	1	0	0	0	0	0	0	0	1	6682	581	21	2		2	GPN1	2	27862969	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12308	27862969	215336404	2764	10915											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27900151	27900151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtaaccctgttgatttGggtgttacaggttgcaaaat	10	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27900151	T	T	27900151	1	4	9	0	1	0	0	0	0	0	0	0	14767	1363	47	2		2	SLC4A1AP	2	27900151	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37182	27900151	215299222	2765	10916											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27917524	27917524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtggagatggcagaaccCatcttaatgacaagtatggc	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27917524	A	A	27917524	3	1	9	1	0	0	0	0	1	0	0	0	14767	594	21	2	2419	2	SLC4A1AP	2	27917524	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17373	27917524	215281849	2766	10917											
MRPL33	9553	broad.mit.edu	37	chr2	28002418	28002418	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatactgattcagaaatcCtgtagcgtgtaataaaagaa	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28002418	A	A	28002418	1	1	9	0	1	0	0	0	0	0	0	0	9890	680	24	2		2	MRPL33	2	28002418	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	84894	28002418	215196955	2767	10918											
BRE	9577	broad.mit.edu	37	chr2	28210860	28210860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattttcttttatttcagGggatatcattttcaatgccc	6	8	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28210860	T	T	28210860	3	4	9	1	0	0	0	0	1	0	0	0	1518	1246	43	2	216	2	BRE	2	28210860	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	208442	28210860	214988513	2768	10919											
BRE	9577	broad.mit.edu	37	chr2	28460062	28460062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccattgtactcttgtcCtttcagtgcacttggaggct	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28460062	A	A	28460062	1	1	9	0	1	0	0	0	0	0	0	0	1518	696	24	2		2	BRE	2	28460062	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	249202	28460062	214739311	2769	10920											
BRE	9577	broad.mit.edu	37	chr2	28464175	28464175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactctacttctcagctttGggtttctattccaggtgcag	8	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28464175	T	T	28464175	1	4	9	0	1	0	0	0	0	0	0	0	1518	1363	47	2		2	BRE	2	28464175	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4113	28464175	214735198	2770	10921											
BRE	9577	broad.mit.edu	37	chr2	28521313	28521313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcccaaaaaaattatcCgtacagccccagatgggatg	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28521313	A	A	28521313	3	1	9	1	0	0	0	0	1	0	0	0	1518	652	23	1	1081	1	BRE	2	28521313	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57138	28521313	214678060	2771	10922											
PLB1	151056	broad.mit.edu	37	chr2	28764630	28764630	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagcaggagtccttcacCgtggttttccagcctttctt	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28764630	A	A	28764630	2	1	9	1	0	0	0	0	0	0	0	1	12119	639	23	1		1	PLB1	2	28764630	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	243317	28764630	214434743	2772	10923											
PLB1	151056	broad.mit.edu	37	chr2	28812874	28812874	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcttctttgtttagctGgagcctgttggccagaagac	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28812874	C	C	28812874	2	2	9	1	0	0	0	0	0	0	0	1	12119	1335	47	4		4	PLB1	2	28812874	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48244	28812874	214386499	2773	10924											
PLB1	151056	broad.mit.edu	37	chr2	28851389	28851389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgccattctctcagagcGggcaccaggggctaaagaga	12	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28851389	T	T	28851389	1	4	9	0	1	0	0	0	0	0	0	0	12119	1131	39	1		1	PLB1	2	28851389	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38515	28851389	214347984	2774	10925											
PPP1CB	5500	broad.mit.edu	37	chr2	28999789	28999789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttatgtatcaagtctcGggagatctttctcagccagc	10	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28999789	T	T	28999789	3	4	9	1	0	0	0	0	1	0	0	0	12451	1116	39	1	131	1	PPP1CB	2	28999789	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	148400	28999789	214199584	2775	10926											
TRMT61B	55006	broad.mit.edu	37	chr2	29092449	29092449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccatcgcattacctttGggaatgttatggcagtccct	8	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29092449	T	T	29092449	3	4	9	1	0	0	0	0	1	0	0	0	16695	1348	47	2	766	2	TRMT61B	2	29092449	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	92660	29092449	214106924	2776	10927											
TRMT61B	55006	broad.mit.edu	37	chr2	29092528	29092528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagcatgtactgcttacCgaaggaactcctcagtatct	7	13	3	0	rs149975108	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29092528	A	A	29092528	3	1	9	1	0	0	0	0	1	0	0	0	16695	652	23	1	845	1	TRMT61B	2	29092528	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	29092528	214106845	2777	10928											
TRMT61B	55006	broad.mit.edu	37	chr2	29092581	29092581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccacgatcttgccgaacGggactgccccccagttacta	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29092581	T	T	29092581	3	4	9	1	0	0	0	0	1	0	0	0	16695	1116	39	1	898	1	TRMT61B	2	29092581	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	29092581	214106792	2778	10929											
WDR43	23160	broad.mit.edu	37	chr2	29147934	29147934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacaccaaaacccatccCtattctagctgctggttttt	5	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29147934	A	A	29147934	3	1	9	1	0	0	0	0	1	0	0	0	17422	681	24	2	1031	2	WDR43	2	29147934	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55353	29147934	214051439	2779	10930											
CLIP4	79745	broad.mit.edu	37	chr2	29366688	29366688	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagatgcttctagatgcGgtgcctctgtcatgtaacat	10	9	3	2	rs146399446		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29366688	T	T	29366688	2	4	9	1	0	0	0	0	0	0	0	1	3567	1103	39	1		1	CLIP4	2	29366688	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	218754	29366688	213832685	2780	10931											
CLIP4	79745	broad.mit.edu	37	chr2	29368140	29368140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaactgaatttgcaagtGggcagtgggctggcattgaa	14	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29368140	T	T	29368140	3	4	9	1	0	0	0	0	1	0	0	0	3567	1348	47	2	954	2	CLIP4	2	29368140	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1452	29368140	213831233	2781	10932											
ALK	238	broad.mit.edu	37	chr2	29416300	29416300	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaggagcagtgaggccccCggaagtctcccagttgcaac	12	13	2	1	rs35500880		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29416300	A	A	29416300	2	1	9	1	0	0	0	0	0	0	0	1	525	639	23	1		1	ALK	2	29416300	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48160	29416300	213783073	2782	10933											
ALK	238	broad.mit.edu	37	chr2	29450451	29450451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagctaccttttaaagctGgggtgtacaggatgcccagt	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29450451	T	T	29450451	3	4	9	1	0	0	0	0	1	0	0	0	525	1348	47	2	2011	2	ALK	2	29450451	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34151	29450451	213748922	2783	10934											
ALK	238	broad.mit.edu	37	chr2	29917881	29917881	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaagctgcactccagacCtgcaataatagccaagggtc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29917881	A	A	29917881	5	1	9	1	0	0	0	0	0	0	1	0	525	695	24	2	4183	2	ALK	2	29917881	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	467430	29917881	213281492	2784	10935											
YPEL5	51646	broad.mit.edu	37	chr2	30379554	30379554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatcatatcggtggtaccCgtctgttttcttgtgcaaac	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30379554	A	A	30379554	3	1	9	1	0	0	0	0	1	0	0	0	17620	652	23	1	39	1	YPEL5	2	30379554	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	461673	30379554	212819819	2785	10936											
CAPN13	92291	broad.mit.edu	37	chr2	30966293	30966293	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattcggagcaagaactcCgctgattttctccgtgtctg	10	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30966293	A	A	30966293	2	1	9	1	0	0	0	0	0	0	0	1	2652	639	23	1		1	CAPN13	2	30966293	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	586739	30966293	212233080	2786	10937											
GALNT14	79623	broad.mit.edu	37	chr2	31133845	31133845	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatttccttgccgttctcGgtgccatcaccgaacatatc	7	14	2	0	rs142193028		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31133845	T	T	31133845	2	4	9	1	0	0	0	0	0	0	0	1	6274	1103	39	1		1	GALNT14	2	31133845	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	167552	31133845	212065528	2787	10938											
GALNT14	79623	broad.mit.edu	37	chr2	31147092	31147092	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcacttctgtctctgtcGgatattgcccttctggatgg	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31147092	T	T	31147092	2	4	9	1	0	0	0	0	0	0	0	1	6274	1124	39	1		1	GALNT14	2	31147092	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13247	31147092	212052281	2788	10939											
XDH	7498	broad.mit.edu	37	chr2	31562383	31562383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagatggccttcttgttgGggcagtcgcggagcagggac	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31562383	T	T	31562383	3	4	9	1	0	0	0	0	1	0	0	0	17553	1232	43	2	267	2	XDH	2	31562383	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	415291	31562383	211636990	2789	10940											
XDH	7498	broad.mit.edu	37	chr2	31590878	31590878	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttctttaggtcccctttctCgatcttcagctcaggtccat	6	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31590878	A	A	31590878	4	1	9	1	0	0	0	0	0	1	0	0	17553	893	31	3	1923	3	XDH	2	31590878	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28495	31590878	211608495	2790	10941											
SLC30A6	55676	broad.mit.edu	37	chr2	32396437	32396437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagacttgtagcagctgacCgaagggtaagttattcctta	10	7	0	2	rs151181468		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32396437	A	A	32396437	2	1	9	1	0	0	0	0	0	0	0	1	14673	644	23	1		1	SLC30A6	2	32396437	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	805559	32396437	210802936	2791	10942											
SLC30A6	55676	broad.mit.edu	37	chr2	32417550	32417550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggaacatgaaagaaaccCgtcagacacatttgctttca	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32417550	A	A	32417550	1	1	9	0	1	0	0	0	0	0	0	0	14673	667	23	1		1	SLC30A6	2	32417550	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21113	32417550	210781823	2792	10943											
SLC30A6	55676	broad.mit.edu	37	chr2	32428277	32428277	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctcctcctcaggatgttGagtctatatccatcgttctg	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32428277	T	T	32428277	1	4	9	0	1	0	0	0	0	0	0	0	14673	1305	45	3		3	SLC30A6	2	32428277	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10727	32428277	210771096	2793	10944											
NLRC4	58484	broad.mit.edu	37	chr2	32474710	32474710	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctgtaggtcatgaatactCaaggttttcaggtttgttac	9	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32474710	A	A	32474710	3	1	9	1	0	0	0	0	1	0	0	0	10564	825	29	3	875	3	NLRC4	2	32474710	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46433	32474710	210724663	2794	10945											
BIRC6	57448	broad.mit.edu	37	chr2	32602828	32602828	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggttcagcttgaattaccCgttacagaggtaagttgaaa	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32602828	A	A	32602828	2	1	9	1	0	0	0	0	0	0	0	1	1444	639	23	1		1	BIRC6	2	32602828	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	128118	32602828	210596545	2795	10946											
BIRC6	57448	broad.mit.edu	37	chr2	32626342	32626342	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcacagtttccttgtacGgatggaactgacagaatatc	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32626342	T	T	32626342	2	4	9	1	0	0	0	0	0	0	0	1	1444	1103	39	1		1	BIRC6	2	32626342	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23514	32626342	210573031	2796	10947											
BIRC6	57448	broad.mit.edu	37	chr2	32626370	32626370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacagaatatcttgctttGggtcggggagctgccctcat	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32626370	T	T	32626370	3	4	9	1	0	0	0	0	1	0	0	0	1444	1348	47	2	1200	2	BIRC6	2	32626370	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	32626370	210573003	2797	10948											
BIRC6	57448	broad.mit.edu	37	chr2	32694653	32694653	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggaattgtacaattcGgaacagcttctcatctttcc	6	11	3	0	rs111964960		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32694653	T	T	32694653	2	4	9	1	0	0	0	0	0	0	0	1	1444	1103	39	1		1	BIRC6	2	32694653	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68283	32694653	210504720	2798	10949											
BIRC6	57448	broad.mit.edu	37	chr2	32702481	32702481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggacagcagaatggtccCgttctaatttagacacagaa	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32702481	A	A	32702481	3	1	9	1	0	0	0	0	1	0	0	0	1444	652	23	1	7036	1	BIRC6	2	32702481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7828	32702481	210496892	2799	10950											
BIRC6	57448	broad.mit.edu	37	chr2	32716655	32716655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttagcctggcatatgccCagactattcaataaacagta	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32716655	A	A	32716655	1	1	9	0	1	0	0	0	0	0	0	0	1444	609	21	2		2	BIRC6	2	32716655	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14174	32716655	210482718	2800	10951											
BIRC6	57448	broad.mit.edu	37	chr2	32724789	32724789	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagtaatgtcaagaagtGgatcagatagctccgtgggt	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32724789	T	T	32724789	4	4	9	1	0	0	0	0	0	1	0	0	1444	1349	47	2	8826	2	BIRC6	2	32724789	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8134	32724789	210474584	2801	10952											
BIRC6	57448	broad.mit.edu	37	chr2	32800256	32800256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacatgtgccactctatcGggcactgctggaattgcttc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32800256	T	T	32800256	3	4	9	1	0	0	0	0	1	0	0	0	1444	1116	39	1	13440	1	BIRC6	2	32800256	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75467	32800256	210399117	2802	10953											
TTC27	55622	broad.mit.edu	37	chr2	32927862	32927862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctatgatttttttcttccCgcttctatcagtgtttgctt	5	9	4	1	rs6705023	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32927862	A	A	32927862	1	1	9	0	1	0	0	0	0	0	0	0	16821	667	23	1		1	TTC27	2	32927862	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	127606	32927862	210271511	2803	10954											
TTC27	55622	broad.mit.edu	37	chr2	32927955	32927955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacttgagaaaggaagtactCgccgagtggaacgggcaatg	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32927955	A	A	32927955	3	1	9	1	0	0	0	0	1	0	0	0	16821	884	31	3	1239	3	TTC27	2	32927955	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	32927955	210271418	2804	10955											
TTC27	55622	broad.mit.edu	37	chr2	33002952	33002952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttggtctttgcagctcGgggtgtggttttctctcggt	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33002952	T	T	33002952	3	4	9	1	0	0	0	0	1	0	0	0	16821	1116	39	1	1738	1	TTC27	2	33002952	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74997	33002952	210196421	2805	10956											
LTBP1	4052	broad.mit.edu	37	chr2	33246005	33246005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgccatgtcagaatggaGggatgtgtctccggccacaa	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33246005	T	T	33246005	3	4	9	1	0	0	0	0	1	0	0	0	9160	1000	35	2	605	2	LTBP1	2	33246005	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	243053	33246005	209953368	2806	10957											
LTBP1	4052	broad.mit.edu	37	chr2	33413864	33413864	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcattcctcacgtctacccCgtggctgctaagacacagct	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33413864	A	A	33413864	2	1	9	1	0	0	0	0	0	0	0	1	9160	639	23	1		1	LTBP1	2	33413864	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	167859	33413864	209785509	2807	10958											
LTBP1	4052	broad.mit.edu	37	chr2	33447184	33447184	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgatggaatgcctaccGggttataagcgggttaacaa	11	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33447184	T	T	33447184	2	4	9	1	0	0	0	0	0	0	0	1	9160	1103	39	1		1	LTBP1	2	33447184	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33320	33447184	209752189	2808	10959											
LTBP1	4052	broad.mit.edu	37	chr2	33484622	33484622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagactgaattgtcttaaatGgtactaataccctttttctt	5	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33484622	T	T	33484622	1	4	9	0	1	0	0	0	0	0	0	0	9160	1363	47	2		2	LTBP1	2	33484622	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37438	33484622	209714751	2809	10960											
RASGRP3	25780	broad.mit.edu	37	chr2	33745672	33745672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttggatcttggtttgattCgtatgactgaggaatttcgg	12	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33745672	A	A	33745672	3	1	9	1	0	0	0	0	1	0	0	0	13184	884	31	3	303	3	RASGRP3	2	33745672	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	261050	33745672	209453701	2810	10961											
RASGRP3	25780	broad.mit.edu	37	chr2	33749040	33749040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaatggaatctctaagtGggtccagttgatggttctta	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33749040	T	T	33749040	3	4	9	1	0	0	0	0	1	0	0	0	13184	1357	47	2	633	2	RASGRP3	2	33749040	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3368	33749040	209450333	2811	10962											
FAM98A	25940	broad.mit.edu	37	chr2	33809836	33809836	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagcaaaatgtaaggttcGgtagcctcaactagtgtaat	9	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33809836	T	T	33809836	1	4	9	0	1	0	0	0	0	0	0	0	5713	1131	39	1		1	FAM98A	2	33809836	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	60796	33809836	209389537	2812	10963											
FAM98A	25940	broad.mit.edu	37	chr2	33817243	33817243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcatctcccctagtagccCactcacctcaagctggaatt	6	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33817243	A	A	33817243	3	1	9	1	0	0	0	0	1	0	0	0	5713	594	21	2	1339	2	FAM98A	2	33817243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7407	33817243	209382130	2813	10964											
CRIM1	51232	broad.mit.edu	37	chr2	36669732	36669732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaatataacaataaacGgtgcctctctgtttgcccct	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36669732	T	T	36669732	1	4	9	0	1	0	0	0	0	0	0	0	3905	1131	39	1		1	CRIM1	2	36669732	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2852489	36669732	206529641	2814	10965											
CRIM1	51232	broad.mit.edu	37	chr2	36691735	36691735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggtgggatccactcccCgcatagtctctcgtggcgat	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36691735	A	A	36691735	3	1	9	1	0	0	0	0	1	0	0	0	3905	652	23	1	946	1	CRIM1	2	36691735	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22003	36691735	206507638	2815	10966											
CRIM1	51232	broad.mit.edu	37	chr2	36744599	36744599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacctgccacagcggacGggtgctgtgtgagacagagg	17	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36744599	T	T	36744599	3	4	9	1	0	0	0	0	1	0	0	0	3905	1116	39	1	2166	1	CRIM1	2	36744599	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52864	36744599	206454774	2816	10967											
FEZ2	9637	broad.mit.edu	37	chr2	36805746	36805746	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacatcacttactgtgccGggcatatgacttctctcatt	6	11	3	1	rs141453382	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36805746	T	T	36805746	2	4	9	1	0	0	0	0	0	0	0	1	5881	1103	39	1		1	FEZ2	2	36805746	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	61147	36805746	206393627	2817	10968											
STRN	6801	broad.mit.edu	37	chr2	37121020	37121020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacttaacatctctggttGgatccagtatgcttccttac	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37121020	T	T	37121020	1	4	9	0	1	0	0	0	0	0	0	0	15447	1363	47	2		2	STRN	2	37121020	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	315274	37121020	206078353	2818	10969											
STRN	6801	broad.mit.edu	37	chr2	37129841	37129841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcccaacaaagctcgcactCgtttagatttcacatctaga	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37129841	A	A	37129841	3	1	9	1	0	0	0	0	1	0	0	0	15447	884	31	3	1853	3	STRN	2	37129841	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8821	37129841	206069532	2819	10970											
HEATR5B	54497	broad.mit.edu	37	chr2	37287781	37287781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtaaaagaatcgcctcGggccttctcagcttccaatt	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37287781	T	T	37287781	2	4	9	1	0	0	0	0	0	0	0	1	7099	1124	39	1		1	HEATR5B	2	37287781	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	157940	37287781	205911592	2820	10971											
EIF2AK2	5610	broad.mit.edu	37	chr2	37334654	37334654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgagatgatgccatccCgtaggtctgtgaaaaactgg	11	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37334654	A	A	37334654	3	1	9	1	0	0	0	0	1	0	0	0	5037	652	23	1	167	1	EIF2AK2	2	37334654	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46873	37334654	205864719	2821	10972											
SULT6B1	391365	broad.mit.edu	37	chr2	37410571	37410571	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaaaggacactcaccttGgctttattctcgaagataga	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37410571	T	T	37410571	2	4	9	1	0	0	0	0	0	0	0	1	15502	1335	47	2		2	SULT6B1	2	37410571	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	75917	37410571	205788802	2822	10973											
CEBPZ	10153	broad.mit.edu	37	chr2	37429994	37429994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatcccatattttcatcCaatagatggccaaactttta	5	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37429994	A	A	37429994	3	1	9	1	0	0	0	0	1	0	0	0	3234	593	21	2	214	2	CEBPZ	2	37429994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19423	37429994	205769379	2823	10974											
CEBPZ	10153	broad.mit.edu	37	chr2	37455613	37455613	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgtcacctagtgtcccCgatgacacaattgccttcat	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37455613	A	A	37455613	2	1	9	1	0	0	0	0	0	0	0	1	3234	639	23	1		1	CEBPZ	2	37455613	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25619	37455613	205743760	2824	10975											
CEBPZ	10153	broad.mit.edu	37	chr2	37455714	37455714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatacagcttctgagcaaGggttttgtacttagatacaa	9	7	1	3	rs142125480		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37455714	T	T	37455714	3	4	9	1	0	0	0	0	1	0	0	0	3234	1000	35	2	2602	2	CEBPZ	2	37455714	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101	37455714	205743659	2825	10976											
C2orf56	55471	broad.mit.edu	37	chr2	37463254	37463254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagggttattatgtgtacCgtgacatgctaggcgaaaaa	11	7	1	1	rs151093411		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37463254	A	A	37463254	3	1	9	1	0	0	0	0	1	0	0	0	2199	652	23	1	242	1	C2orf56	2	37463254	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7540	37463254	205736119	2826	10977											
C2orf56	55471	broad.mit.edu	37	chr2	37475457	37475457	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcaaaaccctttgcatcCgttgtagctgggtttagtga	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37475457	A	A	37475457	2	1	9	1	0	0	0	0	0	0	0	1	2199	639	23	1		1	C2orf56	2	37475457	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12203	37475457	205723916	2827	10978											
CDC42EP3	10602	broad.mit.edu	37	chr2	37873474	37873474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccgaggtgctgttggccCggaagaactcattatgccca	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37873474	A	A	37873474	3	1	9	1	0	0	0	0	1	0	0	0	3107	652	23	1	511	1	CDC42EP3	2	37873474	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	398017	37873474	205325899	2828	10979											
CDC42EP3	10602	broad.mit.edu	37	chr2	37873550	37873550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaaaagctcgtagttccCttgaagaaaggaaatatctc	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37873550	A	A	37873550	3	1	9	1	0	0	0	0	1	0	0	0	3107	681	24	2	587	2	CDC42EP3	2	37873550	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	37873550	205325823	2829	10980											
CDC42EP3	10602	broad.mit.edu	37	chr2	37873630	37873630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcgaaagtctccaagcGggggactgatcatatcagga	14	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37873630	T	T	37873630	3	4	9	1	0	0	0	0	1	0	0	0	3107	1116	39	1	667	1	CDC42EP3	2	37873630	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	37873630	205325743	2830	10981											
FAM82A1	151393	broad.mit.edu	37	chr2	38218330	38218330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaacaatatctgaaacttGggagatgattttcctttgga	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38218330	T	T	38218330	1	4	9	0	1	0	0	0	0	0	0	0	5683	1363	47	2		2	FAM82A1	2	38218330	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	344700	38218330	204981043	2831	10982											
ATL2	64225	broad.mit.edu	37	chr2	38536699	38536699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccaaaaaaaattaggtccCcactggtacgatttcataaa	6	9	1	0	rs145878480	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38536699	A	A	38536699	1	1	9	0	1	0	0	0	0	0	0	0	1111	638	22	2		2	ATL2	2	38536699	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	318369	38536699	204662674	2832	10983											
GALM	130589	broad.mit.edu	37	chr2	38903157	38903157	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaggagtatcacctggcCattaacaaggaacccaacag	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38903157	A	A	38903157	2	1	9	1	0	0	0	0	0	0	0	1	6267	581	21	2		2	GALM	2	38903157	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	366458	38903157	204296216	2833	10984											
DHX57	90957	broad.mit.edu	37	chr2	39025412	39025412	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggtgagctagaagcaggtGagtagcaagcactctctaag	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39025412	T	T	39025412	1	4	9	0	1	0	0	0	0	0	0	0	4553	1305	45	3		3	DHX57	2	39025412	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	122255	39025412	204173961	2834	10985											
DHX57	90957	broad.mit.edu	37	chr2	39029963	39029963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccaaacaagaccagcGggtacacagacaccatgctg	8	15	0	2	rs150583206		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39029963	T	T	39029963	3	4	9	1	0	0	0	0	1	0	0	0	4553	1116	39	1	257	1	DHX57	2	39029963	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4551	39029963	204169410	2835	10986											
DHX57	90957	broad.mit.edu	37	chr2	39070278	39070278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaaatgcagttctgttcCgccttgctttaagcttttcc	6	12	2	0	rs145593757	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39070278	A	A	39070278	3	1	9	1	0	0	0	0	1	0	0	0	4553	652	23	1	1918	1	DHX57	2	39070278	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40315	39070278	204129095	2836	10987											
DHX57	90957	broad.mit.edu	37	chr2	39081288	39081288	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttctcagcagcactccCgtggtgcagtataacagtct	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39081288	A	A	39081288	2	1	9	1	0	0	0	0	0	0	0	1	4553	639	23	1		1	DHX57	2	39081288	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11010	39081288	204118085	2837	10988											
DHX57	90957	broad.mit.edu	37	chr2	39082150	39082150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccaaaactttttatacCtaaaaaccataaatttctgt	1	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39082150	A	A	39082150	1	1	9	0	1	0	0	0	0	0	0	0	4553	696	24	2		2	DHX57	2	39082150	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	862	39082150	204117223	2838	10989											
SOS1	6654	broad.mit.edu	37	chr2	39213047	39213047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccttttgtaagtttttGgagggagtttagggatatgt	13	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39213047	T	T	39213047	3	4	9	1	0	0	0	0	1	0	0	0	15050	1348	47	2	85	2	SOS1	2	39213047	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	130897	39213047	203986326	2839	10990											
SOS1	6654	broad.mit.edu	37	chr2	39224537	39224537	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacctcagggttgccttcttCtgttttcaagatattagtga	9	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39224537	A	A	39224537	4	1	9	1	0	0	0	0	0	1	0	0	15050	922	32	3	1204	3	SOS1	2	39224537	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11490	39224537	203974836	2840	10991											
SOS1	6654	broad.mit.edu	37	chr2	39262581	39262581	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taactgactaaggaaacgatCatgaaaaccaggtcgcaaaa	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39262581	A	A	39262581	3	1	9	1	0	0	0	0	1	0	0	0	15050	826	29	3	3144	3	SOS1	2	39262581	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38044	39262581	203936792	2841	10992											
CDKL4	344387	broad.mit.edu	37	chr2	39417579	39417579	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccatactgagtatctccCacaagaagttcaggagctcg	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39417579	A	A	39417579	2	1	9	1	0	0	0	0	0	0	0	1	3186	581	21	2		2	CDKL4	2	39417579	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	154998	39417579	203781794	2842	10993											
MAP4K3	8491	broad.mit.edu	37	chr2	39515282	39515282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggcaacaggtttgtgtGggggtaatctgggaggtggt	18	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39515282	T	T	39515282	3	4	9	1	0	0	0	0	1	0	0	0	9353	1348	47	2	1290	2	MAP4K3	2	39515282	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97703	39515282	203684091	2843	10994											
MAP4K3	8491	broad.mit.edu	37	chr2	39515319	39515319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtctaggtggaacttGggatggctttgctgggctcc	17	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39515319	T	T	39515319	3	4	9	1	0	0	0	0	1	0	0	0	9353	1357	47	2	1327	2	MAP4K3	2	39515319	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	39515319	203684054	2844	10995											
THUMPD2	80745	broad.mit.edu	37	chr2	39964113	39964113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtccttggaattgaaaGggatgttgctctctttacaa	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39964113	T	T	39964113	3	4	9	1	0	0	0	0	1	0	0	0	16006	1000	35	2	241	2	THUMPD2	2	39964113	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	448794	39964113	203235260	2845	10996											
THUMPD2	80745	broad.mit.edu	37	chr2	39993168	39993168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttaaccatctgtcttatGggacaaaccggaagcttaga	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39993168	T	T	39993168	1	4	9	0	1	0	0	0	0	0	0	0	16006	1363	47	2		2	THUMPD2	2	39993168	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29055	39993168	203206205	2846	10997											
SLC8A1	6546	broad.mit.edu	37	chr2	40655703	40655703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttcgatggttttatatGgaacgataacatttcctcga	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40655703	T	T	40655703	3	4	9	1	0	0	0	0	1	0	0	0	14820	1348	47	2	1351	2	SLC8A1	2	40655703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	662535	40655703	202543670	2847	10998											
SLC8A1	6546	broad.mit.edu	37	chr2	40656844	40656844	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatcttccttgtctctcCgtcaggcaccacataaacac	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656844	A	A	40656844	4	1	9	1	0	0	0	0	0	1	0	0	14820	661	23	1	2492	1	SLC8A1	2	40656844	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1141	40656844	202542529	2848	10999											
PKDCC	91461	broad.mit.edu	37	chr2	42280416	42280416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggacagcgaggacatccCagacaccctgaccaccatca	8	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42280416	A	A	42280416	3	1	9	1	0	0	0	0	1	0	0	0	12064	594	21	2	683	2	PKDCC	2	42280416	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1623572	42280416	200918957	2849	11000											
EML4	27436	broad.mit.edu	37	chr2	42508121	42508121	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactggagtgggcgtatcctTctctaccatgacagcaaatt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42508121	A	A	42508121	1	1	9	0	1	0	0	0	0	0	0	0	5141	1798	62	5		5	EML4	2	42508121	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	227705	42508121	200691252	2850	11001											
EML4	27436	broad.mit.edu	37	chr2	42515480	42515480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaaatttttaaaaaacCgagtattgtgttttagagta	8	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42515480	A	A	42515480	1	1	9	0	1	0	0	0	0	0	0	0	5141	667	23	1		1	EML4	2	42515480	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7359	42515480	200683893	2851	11002											
KCNG3	170850	broad.mit.edu	37	chr2	42671626	42671626	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaatcaatgatgttcagGggtctcttgacaaactcaca	8	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42671626	T	T	42671626	2	4	9	1	0	0	0	0	0	0	0	1	8099	1219	43	2		2	KCNG3	2	42671626	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	156146	42671626	200527747	2852	11003											
MTA3	57504	broad.mit.edu	37	chr2	42935061	42935061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctacacagtctcaccagtGgtattcttggggcccaccta	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42935061	T	T	42935061	3	4	9	1	0	0	0	0	1	0	0	0	10004	1357	47	2	1219	2	MTA3	2	42935061	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	263435	42935061	200264312	2853	11004											
MTA3	57504	broad.mit.edu	37	chr2	42935968	42935968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaaacagtaacgtgtttGggcaagttcacttccttgag	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42935968	T	T	42935968	1	4	9	0	1	0	0	0	0	0	0	0	10004	1363	47	2		2	MTA3	2	42935968	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	907	42935968	200263405	2854	11005											
THADA	63892	broad.mit.edu	37	chr2	43755035	43755035	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctgtttagtacttcagtGagtttcacaaaaccagtata	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43755035	T	T	43755035	2	4	9	1	0	0	0	0	0	0	0	1	15963	1277	45	3		3	THADA	2	43755035	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	819067	43755035	199444338	2855	11006											
THADA	63892	broad.mit.edu	37	chr2	43783439	43783439	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctaaccaaatgaatactGagactaagctattcgttttg	6	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43783439	T	T	43783439	1	4	9	0	1	0	0	0	0	0	0	0	15963	1305	45	3		3	THADA	2	43783439	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28404	43783439	199415934	2856	11007											
PLEKHH2	130271	broad.mit.edu	37	chr2	43980780	43980780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatttctcagtgcaagctCgtggagagactgatagagaa	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43980780	A	A	43980780	3	1	9	1	0	0	0	0	1	0	0	0	12172	884	31	3	3770	3	PLEKHH2	2	43980780	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	197341	43980780	199218593	2857	11008											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44016823	44016823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggaggaacctctttattgGacttaatcagcatacccatc	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44016823	T	T	44016823	3	4	9	1	0	0	0	0	1	0	0	0	4887	1174	41	3	301	3	DYNC2LI1	2	44016823	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36043	44016823	199182550	2858	11009											
ABCG5	64240	broad.mit.edu	37	chr2	44041634	44041634	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaagtgaaattcagtcCgtagaactcattgactacaa	6	10	2	3	rs144973796	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44041634	A	A	44041634	4	1	9	1	0	0	0	0	0	1	0	0	71	661	23	1	219	1	ABCG5	2	44041634	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24811	44041634	199157739	2859	11010											
ABCG5	64240	broad.mit.edu	37	chr2	44051154	44051154	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctttagcacattgcttcGgacccgcagaacgaagaaaa	8	12	0	2	rs119479065		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44051154	T	T	44051154	2	4	9	1	0	0	0	0	0	0	0	1	71	1124	39	1		1	ABCG5	2	44051154	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9520	44051154	199148219	2860	11011											
ABCG5	64240	broad.mit.edu	37	chr2	44051586	44051586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccactaaaagtttttccCaaaagatgtcacccatgtgt	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44051586	A	A	44051586	1	1	9	0	1	0	0	0	0	0	0	0	71	609	21	2		2	ABCG5	2	44051586	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	432	44051586	199147787	2861	11012											
ABCG8	64241	broad.mit.edu	37	chr2	44079425	44079425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgggcgcctttatccttGgggtcacaatgtgtccagcc	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44079425	T	T	44079425	1	4	9	0	1	0	0	0	0	0	0	0	72	1363	47	2		2	ABCG8	2	44079425	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27839	44079425	199119948	2862	11013											
ABCG8	64241	broad.mit.edu	37	chr2	44102330	44102330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctacatcatcatctacGggatgcccacctactggctg	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44102330	T	T	44102330	3	4	9	1	0	0	0	0	1	0	0	0	72	1116	39	1	1576	1	ABCG8	2	44102330	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22905	44102330	199097043	2863	11014											
LRPPRC	10128	broad.mit.edu	37	chr2	44177773	44177773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggatcgaaaataaaccCaggtttattttcaagtatat	6	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44177773	A	A	44177773	1	1	9	0	1	0	0	0	0	0	0	0	9052	609	21	2		2	LRPPRC	2	44177773	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	75443	44177773	199021600	2864	11015											
LRPPRC	10128	broad.mit.edu	37	chr2	44200947	44200947	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtagtaccagttttattggcGagtaaagcacaatggagggt	13	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44200947	T	T	44200947	2	4	9	1	0	0	0	0	0	0	0	1	9052	1045	37	3		3	LRPPRC	2	44200947	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23174	44200947	198998426	2865	11016											
LRPPRC	10128	broad.mit.edu	37	chr2	44201358	44201358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccatcttcctttgatacGgggcatgctagtaaaatttg	11	8	1	1	rs150044060		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44201358	T	T	44201358	2	4	9	1	0	0	0	0	0	0	0	1	9052	1103	39	1		1	LRPPRC	2	44201358	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	411	44201358	198998015	2866	11017											
LRPPRC	10128	broad.mit.edu	37	chr2	44209469	44209469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctagtctcattagagccCaatcaaactgattggaaatc	7	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44209469	A	A	44209469	3	1	9	1	0	0	0	0	1	0	0	0	9052	595	21	2	4078	2	LRPPRC	2	44209469	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8111	44209469	198989904	2867	11018											
PPM1B	5495	broad.mit.edu	37	chr2	44459476	44459477	+	Missense_Mutation	DNP	CC	AA	AA													gtgctggagatctagaagacCcatggtagccttaaaaacct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44459477	AA	AA	44459476	3	1	9	1	0	0	0	0	1	0	0	0	12437	623	22	2	1517	2	PPM1B	2	44459476	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	250007	44459476	198739897	2868	11019											
SLC3A1	6519	broad.mit.edu	37	chr2	44531324	44531324	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagagtattgacaggacCgtgatgtactatggattgcc	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44531324	A	A	44531324	2	1	9	1	0	0	0	0	0	0	0	1	14740	639	23	1		1	SLC3A1	2	44531324	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71848	44531324	198668049	2869	11020											
PREPL	9581	broad.mit.edu	37	chr2	44549895	44549895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgtccttagcatgctcCgcgatggcttccttgagttt	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44549895	A	A	44549895	2	1	9	1	0	0	0	0	0	0	0	1	12581	639	23	1		1	PREPL	2	44549895	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18571	44549895	198649478	2870	11021											
SIX2	10736	broad.mit.edu	37	chr2	45233586	45233586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgccgctgccattcagcGggttgtggctgttagaattg	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45233586	T	T	45233586	3	4	9	1	0	0	0	0	1	0	0	0	14460	1116	39	1	280	1	SIX2	2	45233586	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	683691	45233586	197965787	2871	11022											
SRBD1	55133	broad.mit.edu	37	chr2	45829089	45829089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagccatcactgatctgtgGggcattcttcttcacccgag	10	12	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45829089	T	T	45829089	3	4	9	1	0	0	0	0	1	0	0	0	15251	1232	43	2	2849	2	SRBD1	2	45829089	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	595503	45829089	197370284	2872	11023											
ATP6V1E2	90423	broad.mit.edu	37	chr2	46739191	46739191	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatataaagaactttctgttGgtgttagcaccaaacaaggc	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46739191	T	T	46739191	2	4	9	1	0	0	0	0	0	0	0	1	1188	1335	47	2		2	ATP6V1E2	2	46739191	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	910102	46739191	196460182	2873	11024											
ATP6V1E2	90423	broad.mit.edu	37	chr2	46739392	46739392	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaattgtcatgtactcGgggatggctttttgtacagc	13	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46739392	T	T	46739392	2	4	9	1	0	0	0	0	0	0	0	1	1188	1103	39	1		1	ATP6V1E2	2	46739392	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	201	46739392	196459981	2874	11025											
ATP6V1E2	90423	broad.mit.edu	37	chr2	46739706	46739706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccataatcttcagtcgttGggtttgcacgaggcgtcctt	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46739706	T	T	46739706	3	4	9	1	0	0	0	0	1	0	0	0	1188	1357	47	2	539	2	ATP6V1E2	2	46739706	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	314	46739706	196459667	2875	11026											
ATP6V1E2	90423	broad.mit.edu	37	chr2	46739871	46739871	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctctcagaggggacgGcagagagggagctcgtacac	17	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46739871	A	A	46739871	1	1	9	0	1	0	0	0	0	0	0	0	1188	1218	42	4		4	ATP6V1E2	2	46739871	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	165	46739871	196459502	2876	11027											
TTC7A	57217	broad.mit.edu	37	chr2	47177420	47177420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtactgggtatgggtggttGggtgggtccaggagtgtgca	20	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47177420	T	T	47177420	1	4	9	0	1	0	0	0	0	0	0	0	16838	1363	47	2		2	TTC7A	2	47177420	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	437549	47177420	196021953	2877	11028											
TTC7A	57217	broad.mit.edu	37	chr2	47184066	47184066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatcagcatgtacgcacGggccgggattgatgacatgt	13	10	1	2	rs61746139	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47184066	T	T	47184066	3	4	9	1	0	0	0	0	1	0	0	0	16838	1116	39	1	447	1	TTC7A	2	47184066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6646	47184066	196015307	2878	11029											
TTC7A	57217	broad.mit.edu	37	chr2	47202025	47202025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagagtgtctgccccctcGgatgagcccaccttcggccc	10	18	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47202025	T	T	47202025	1	4	9	0	1	0	0	0	0	0	0	0	16838	1131	39	1		1	TTC7A	2	47202025	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17959	47202025	195997348	2879	11030											
TTC7A	57217	broad.mit.edu	37	chr2	47202261	47202261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagctggaaataacacCgtggtaggagctgctctcta	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47202261	A	A	47202261	1	1	9	0	1	0	0	0	0	0	0	0	16838	667	23	1		1	TTC7A	2	47202261	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	236	47202261	195997112	2880	11031											
TTC7A	57217	broad.mit.edu	37	chr2	47233901	47233901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggggttgcacactcaccCgcagggggctctgctgagat	14	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47233901	A	A	47233901	1	1	9	0	1	0	0	0	0	0	0	0	16838	667	23	1		1	TTC7A	2	47233901	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31640	47233901	195965472	2881	11032											
EPCAM	4072	broad.mit.edu	37	chr2	47613678	47613678	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaagattgaaaaattattTagaatttttttctgtgcttt	5	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47613678	C	C	47613678	1	2	9	0	1	0	0	0	0	0	0	0	5204	1769	61	5		5	EPCAM	2	47613678	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	379777	47613678	195585695	2882	11033											
MSH2	4436	broad.mit.edu	37	chr2	47637275	47637275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttgaagacattctctttGgtaacaatgatatgtcagct	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47637275	T	T	47637275	3	4	9	1	0	0	0	0	1	0	0	0	9964	1348	47	2	419	2	MSH2	2	47637275	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23597	47637275	195562098	2883	11034											
MSH2	4436	broad.mit.edu	37	chr2	47672686	47672686	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttactactttcttttaGgaaaacaccagaaattattg	5	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47672686	T	T	47672686	5	4	9	1	0	0	0	0	0	0	1	0	9964	1014	35	2	1306	2	MSH2	2	47672686	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	35411	47672686	195526687	2884	11035											
MSH6	2956	broad.mit.edu	37	chr2	48026894	48026894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagtggcacactatccccCagtacaagttttatttgaaa	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48026894	A	A	48026894	3	1	9	1	0	0	0	0	1	0	0	0	9968	594	21	2	1786	2	MSH6	2	48026894	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	354208	48026894	195172479	2885	11036											
MSH6	2956	broad.mit.edu	37	chr2	48027404	48027404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggaaccctactagagaGggttgatacttgccatactc	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48027404	T	T	48027404	3	4	9	1	0	0	0	0	1	0	0	0	9968	1000	35	2	2296	2	MSH6	2	48027404	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	510	48027404	195171969	2886	11037											
MSH6	2956	broad.mit.edu	37	chr2	48027463	48027463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagcaatggctttgtgccCcactctgtaaccattatgct	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48027463	A	A	48027463	3	1	9	1	0	0	0	0	1	0	0	0	9968	623	22	2	2355	2	MSH6	2	48027463	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	48027463	195171910	2887	11038											
KLRAQ1	129285	broad.mit.edu	37	chr2	48687004	48687004	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggttgacggtctcaccCggaagtacatggaaaccatt	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48687004	A	A	48687004	2	1	9	1	0	0	0	0	0	0	0	1	8484	643	23	1		1	KLRAQ1	2	48687004	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	659541	48687004	194512369	2888	11039											
KLRAQ1	129285	broad.mit.edu	37	chr2	48692642	48692642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattttaaagctgaagatgcGagatattgctgggcaggccc	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48692642	T	T	48692642	3	4	9	1	0	0	0	0	1	0	0	0	8484	1058	37	3	792	3	KLRAQ1	2	48692642	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5638	48692642	194506731	2889	11040											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48808064	48808064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggcatccccaaagcaGggactcatgtgctttatcct	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48808064	T	T	48808064	3	4	9	1	0	0	0	0	1	0	0	0	15435	1000	35	2	294	2	STON1-GTF2A1L	2	48808064	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	115422	48808064	194391309	2890	11041											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48808771	48808771	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgtaggctttctgaaccCaaggttgagaacttcagtgt	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48808771	A	A	48808771	2	1	9	1	0	0	0	0	0	0	0	1	15435	581	21	2		2	STON1-GTF2A1L	2	48808771	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	707	48808771	194390602	2891	11042											
LHCGR	3973	broad.mit.edu	37	chr2	48956231	48956231	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaatacaaataccaagtGggctccagccagtgagggta	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48956231	T	T	48956231	1	4	9	0	1	0	0	0	0	0	0	0	8834	1363	47	2		2	LHCGR	2	48956231	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	147460	48956231	194243142	2892	11043											
LHCGR	3973	broad.mit.edu	37	chr2	48956417	48956417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacatgaaagaaatgacCgtgtctgcatgattatgagc	10	6	1	6	rs6759468	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48956417	A	A	48956417	1	1	9	0	1	0	0	0	0	0	0	0	8834	667	23	1		1	LHCGR	2	48956417	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	186	48956417	194242956	2893	11044											
GTF2A1L	11036	broad.mit.edu	37	chr2	48960095	48960095	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggatccgagaagaacaGggacagtgtgggaagaaatc	14	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48960095	T	T	48960095	1	4	9	0	1	0	0	0	0	0	0	0	6918	1015	35	2		2	GTF2A1L	2	48960095	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	3678	48960095	194239278	2894	11045											
FSHR	2492	broad.mit.edu	37	chr2	49190645	49190645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcatcacagcctgcccCagtttgccagtcaatggcat	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49190645	A	A	49190645	3	1	9	1	0	0	0	0	1	0	0	0	6133	594	21	2	776	2	FSHR	2	49190645	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	230550	49190645	194008728	2895	11046											
FSHR	2492	broad.mit.edu	37	chr2	49247265	49247265	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttggagaacacatctgcctCtatcacctccaagacatcat	6	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49247265	A	A	49247265	4	1	9	1	0	0	0	0	0	1	0	0	6133	922	32	3	1860	3	FSHR	2	49247265	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56620	49247265	193952108	2896	11047											
NRXN1	9378	broad.mit.edu	37	chr2	50149313	50149313	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actatcccaacgaccataccCgtggtgctgctggactcccg	9	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50149313	G	G	50149313	2	3	9	1	0	0	0	0	0	0	0	1	10760	639	23	4		4	NRXN1	2	50149313	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	902048	50149313	193050060	2897	11048											
NRXN1	9378	broad.mit.edu	37	chr2	50318466	50318466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcacttgcttacctgcaGggtagcgctcgatcactggc	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50318466	T	T	50318466	3	4	9	1	0	0	0	0	1	0	0	0	10760	1000	35	2	830	2	NRXN1	2	50318466	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	169153	50318466	192880907	2898	11049											
NRXN1	9378	broad.mit.edu	37	chr2	50765651	50765651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagtccacacctcggtgGggaagacaaggccagcttta	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50765651	T	T	50765651	3	4	9	1	0	0	0	0	1	0	0	0	10760	1232	43	2	2959	2	NRXN1	2	50765651	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	447185	50765651	192433722	2899	11050											
GPR75	10936	broad.mit.edu	37	chr2	54080461	54080461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtagtaaggttcaatcCgagtgttgatgggggtcgag	16	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54080461	A	A	54080461	3	1	9	1	0	0	0	0	1	0	0	0	6773	652	23	1	193	1	GPR75	2	54080461	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3314810	54080461	189118912	2900	11051											
PSME4	23198	broad.mit.edu	37	chr2	54125108	54125108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagtagagacagaagccCaatgcctatatgttcaaatt	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54125108	A	A	54125108	3	1	9	1	0	0	0	0	1	0	0	0	12815	594	21	2	2090	2	PSME4	2	54125108	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44647	54125108	189074265	2901	11052											
PSME4	23198	broad.mit.edu	37	chr2	54133722	54133722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgagagtgcagcgtttGgataagccttacctgactgt	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54133722	T	T	54133722	1	4	9	0	1	0	0	0	0	0	0	0	12815	1363	47	2		2	PSME4	2	54133722	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8614	54133722	189065651	2902	11053											
PSME4	23198	broad.mit.edu	37	chr2	54147374	54147374	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacaatgctggagtttgacGagctcaggctgaagaaagga	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54147374	T	T	54147374	2	4	9	1	0	0	0	0	0	0	0	1	12815	1045	37	3		3	PSME4	2	54147374	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13652	54147374	189051999	2903	11054											
PSME4	23198	broad.mit.edu	37	chr2	54163935	54163935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagattttgcactgaaaccCaaaggccaattaattcatca	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54163935	A	A	54163935	3	1	9	1	0	0	0	0	1	0	0	0	12815	595	21	2	4970	2	PSME4	2	54163935	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16561	54163935	189035438	2904	11055											
SPTBN1	6711	broad.mit.edu	37	chr2	54826288	54826288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcaattcccaccttgccCgtgtgtcctgccggatcaca	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54826288	A	A	54826288	3	1	9	1	0	0	0	0	1	0	0	0	15237	652	23	1	327	1	SPTBN1	2	54826288	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	662353	54826288	188373085	2905	11056											
SPTBN1	6711	broad.mit.edu	37	chr2	54853285	54853285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggaactgctcagggccCggagacagcggctcgagatg	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54853285	A	A	54853285	2	1	9	1	0	0	0	0	0	0	0	1	15237	643	23	1		1	SPTBN1	2	54853285	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26997	54853285	188346088	2906	11057											
SPTBN1	6711	broad.mit.edu	37	chr2	54886293	54886293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactctattttctcttagttGgagttactggaagtgcgcag	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54886293	T	T	54886293	3	4	9	1	0	0	0	0	1	0	0	0	15237	1339	47	2	6477	2	SPTBN1	2	54886293	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33008	54886293	188313080	2907	11058											
RTN4	57142	broad.mit.edu	37	chr2	55253918	55253918	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagtatcatcattactactCtcactatctttttcgtgatt	4	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55253918	A	A	55253918	3	1	9	1	0	0	0	0	1	0	0	0	13839	912	32	3	2327	3	RTN4	2	55253918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	367625	55253918	187945455	2908	11059											
MTIF2	4528	broad.mit.edu	37	chr2	55464448	55464448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaattacatgtccattacGggttagtttaaatttttttt	5	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55464448	T	T	55464448	3	4	9	1	0	0	0	0	1	0	0	0	10028	1116	39	1	204	1	MTIF2	2	55464448	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	210530	55464448	187734925	2909	11060											
CCDC88A	55704	broad.mit.edu	37	chr2	55528358	55528358	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccatgaactcttgatccCgtactagaatcatcactaac	4	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55528358	A	A	55528358	2	1	9	1	0	0	0	0	0	0	0	1	2891	639	23	1		1	CCDC88A	2	55528358	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63910	55528358	187671015	2910	11061											
CCDC104	112942	broad.mit.edu	37	chr2	55771002	55771002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaacattagctcatttcGgtaaacctagcctaacactt	4	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55771002	T	T	55771002	1	4	9	0	1	0	0	0	0	0	0	0	2765	1131	39	1		1	CCDC104	2	55771002	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	242644	55771002	187428371	2911	11062											
SMEK2	57223	broad.mit.edu	37	chr2	55813743	55813743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaacatgaaaagaaacGgcataattaccattacaatt	4	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55813743	T	T	55813743	1	4	9	0	1	0	0	0	0	0	0	0	14908	1131	39	1		1	SMEK2	2	55813743	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42741	55813743	187385630	2912	11063											
EFEMP1	2202	broad.mit.edu	37	chr2	56098015	56098015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctattgactggggcagttctCggcacatggcatttgagact	12	9	1	2	rs146446706	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56098015	A	A	56098015	3	1	9	1	0	0	0	0	1	0	0	0	4981	884	31	3	329	3	EFEMP1	2	56098015	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	284272	56098015	187101358	2913	11064											
EFEMP1	2202	broad.mit.edu	37	chr2	56149516	56149516	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtacgtgatggtttcttcGgtgtcctgtgacttgaccag	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56149516	T	T	56149516	2	4	9	1	0	0	0	0	0	0	0	1	4981	1103	39	1		1	EFEMP1	2	56149516	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	51501	56149516	187049857	2914	11065											
EFEMP1	2202	broad.mit.edu	37	chr2	56149563	56149563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcagcatagttaggaaaaGggctttcaacattgtgaatc	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56149563	T	T	56149563	3	4	9	1	0	0	0	0	1	0	0	0	4981	1000	35	2	1508	2	EFEMP1	2	56149563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47	56149563	187049810	2915	11066											
VRK2	7444	broad.mit.edu	37	chr2	58315576	58315576	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctgcaattaggtatcCgaatggtaagaattacttat	8	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58315576	A	A	58315576	2	1	9	1	0	0	0	0	0	0	0	1	17347	644	23	1		1	VRK2	2	58315576	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2166013	58315576	184883797	2916	11067											
BCL11A	53335	broad.mit.edu	37	chr2	60689418	60689418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgaagggataccaaccCgcggggtcaggggacttccg	15	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60689418	A	A	60689418	3	1	9	1	0	0	0	0	1	0	0	0	1368	666	23	1	1988	1	BCL11A	2	60689418	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2373842	60689418	182509955	2917	11068											
BCL11A	53335	broad.mit.edu	37	chr2	60773197	60773197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggatgccaacctccacGggattggatgcttttttcat	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60773197	T	T	60773197	2	4	9	1	0	0	0	0	0	0	0	1	1368	1103	39	1		1	BCL11A	2	60773197	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83779	60773197	182426176	2918	11069											
PAPOLG	64895	broad.mit.edu	37	chr2	60987322	60987322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattatggaattacctcccCaattagtttggcatctccta	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60987322	A	A	60987322	3	1	9	1	0	0	0	0	1	0	0	0	11525	594	21	2	77	2	PAPOLG	2	60987322	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	214125	60987322	182212051	2919	11070											
PAPOLG	64895	broad.mit.edu	37	chr2	60998586	60998586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttttcacattttttggtGggatgggagaggatggatta	14	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60998586	T	T	60998586	1	4	9	0	1	0	0	0	0	0	0	0	11525	1363	47	2		2	PAPOLG	2	60998586	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11264	60998586	182200787	2920	11071											
PUS10	150962	broad.mit.edu	37	chr2	61180310	61180310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacaaaaaaaccttgccCtgaattagcctttctttaaa	3	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61180310	A	A	61180310	1	1	9	0	1	0	0	0	0	0	0	0	12939	696	24	2		2	PUS10	2	61180310	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	181724	61180310	182019063	2921	11072											
PUS10	150962	broad.mit.edu	37	chr2	61194730	61194730	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaactatatcatctcttccCagcgacagactctgctttct	5	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61194730	A	A	61194730	2	1	9	1	0	0	0	0	0	0	0	1	12939	581	21	2		2	PUS10	2	61194730	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14420	61194730	182004643	2922	11073											
KIAA1841	84542	broad.mit.edu	37	chr2	61304117	61304117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaagattttacttgccCgcgagatcttttgatatcag	9	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61304117	A	A	61304117	3	1	9	1	0	0	0	0	1	0	0	0	8331	652	23	1	508	1	KIAA1841	2	61304117	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109387	61304117	181895256	2923	11074											
KIAA1841	84542	broad.mit.edu	37	chr2	61308543	61308543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctgttcagaggagattGgggtacccatcaaaagggta	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61308543	T	T	61308543	1	4	9	0	1	0	0	0	0	0	0	0	8331	1363	47	2		2	KIAA1841	2	61308543	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4426	61308543	181890830	2924	11075											
USP34	9736	broad.mit.edu	37	chr2	61433128	61433128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccactaggtttttacacGggtgaatttttcaagtaact	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61433128	T	T	61433128	1	4	9	0	1	0	0	0	0	0	0	0	17192	1131	39	1		1	USP34	2	61433128	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	124585	61433128	181766245	2925	11076											
USP34	9736	broad.mit.edu	37	chr2	61441512	61441512	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttgtagctattgctggctCagaaagtttaggctggaaaa	11	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61441512	A	A	61441512	4	1	9	1	0	0	0	0	0	1	0	0	17192	835	29	3	2327	3	USP34	2	61441512	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8384	61441512	181757861	2926	11077											
USP34	9736	broad.mit.edu	37	chr2	61456684	61456684	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaaaagtacttcttaccCatcttccattcctggctgca	4	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61456684	G	G	61456684	3	3	9	1	0	0	0	0	1	0	0	0	17192	608	21	4	3530	4	USP34	2	61456684	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15172	61456684	181742689	2927	11078											
USP34	9736	broad.mit.edu	37	chr2	61524011	61524011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcagtagctcccagaccCgcctagacagattttctgca	8	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61524011	A	A	61524011	3	1	9	1	0	0	0	0	1	0	0	0	17192	652	23	1	6666	1	USP34	2	61524011	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67327	61524011	181675362	2928	11079											
USP34	9736	broad.mit.edu	37	chr2	61528157	61528157	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catctctaataaatcaaaaaGagtagttaaatgaggctctt	6	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61528157	T	T	61528157	3	4	9	1	0	0	0	0	1	0	0	0	17192	942	33	3	6791	3	USP34	2	61528157	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4146	61528157	181671216	2929	11080											
USP34	9736	broad.mit.edu	37	chr2	61528548	61528548	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcataatctgttgttaactCgtgtccagatgaaatcatcc	6	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61528548	A	A	61528548	4	1	9	1	0	0	0	0	0	1	0	0	17192	893	31	3	6993	3	USP34	2	61528548	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	391	61528548	181670825	2930	11081											
USP34	9736	broad.mit.edu	37	chr2	61605509	61605509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacttacgtttctgtgtcCgatactaatgattcattatt	5	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61605509	A	A	61605509	2	1	9	1	0	0	0	0	0	0	0	1	17192	639	23	1		1	USP34	2	61605509	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76961	61605509	181593864	2931	11082											
USP34	9736	broad.mit.edu	37	chr2	61610448	61610448	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgtgctgcatgacagcGggaatatgtagccatattct	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61610448	T	T	61610448	2	4	9	1	0	0	0	0	0	0	0	1	17192	1103	39	1		1	USP34	2	61610448	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4939	61610448	181588925	2932	11083											
XPO1	7514	broad.mit.edu	37	chr2	61721099	61721099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgacttccagaaagcaacGgagaggcagatgtagagaat	13	6	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61721099	T	T	61721099	3	4	9	1	0	0	0	0	1	0	0	0	17572	1116	39	1	2096	1	XPO1	2	61721099	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110651	61721099	181478274	2933	11084											
CCT4	10575	broad.mit.edu	37	chr2	62099289	62099289	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctgttactgtagaaatGggattcaggccggcattttc	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62099289	T	T	62099289	2	4	9	1	0	0	0	0	0	0	0	1	2985	1335	47	2		2	CCT4	2	62099289	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	378190	62099289	181100084	2934	11085											
CCT4	10575	broad.mit.edu	37	chr2	62099624	62099624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacaacgaataacacataGggcatcatgaatggagcgct	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62099624	T	T	62099624	3	4	9	1	0	0	0	0	1	0	0	0	2985	991	35	2	410	2	CCT4	2	62099624	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	335	62099624	181099749	2935	11086											
COMMD1	150684	broad.mit.edu	37	chr2	62132853	62132853	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggtggcaaacccctgagcGggctgctgaatgcgctggcc	16	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62132853	C	C	62132853	3	2	9	1	0	0	0	0	1	0	0	0	3746	1116	39	4	42	4	COMMD1	2	62132853	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33229	62132853	181066520	2936	11087											
B3GNT2	10678	broad.mit.edu	37	chr2	62449571	62449571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaccggcagtacaacccCatcctgagcatgctgaccaa	8	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62449571	A	A	62449571	2	1	9	1	0	0	0	0	0	0	0	1	1262	581	21	2		2	B3GNT2	2	62449571	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	316718	62449571	180749802	2937	11088											
B3GNT2	10678	broad.mit.edu	37	chr2	62449598	62449598	+	Silent	SNP	G	T	T													agcatgctgaccaaccagacGggggaggcgggcaggctctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62449598	T	T	62449598	2	4	9	1	0	0	0	0	0	0	0	1	1262	1103	39	1		1	B3GNT2	2	62449598	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	62449598	180749775	2938	11089	68	2									
B3GNT2	10678	broad.mit.edu	37	chr2	62449607	62449607	+	Silent	SNP	G	T	T													accaaccagacgggggaggcGggcaggctctccaatataag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62449607	T	T	62449607	2	4	9	1	0	0	0	0	0	0	0	1	1262	1103	39	1		1	B3GNT2	2	62449607	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	62449607	180749766	2939	11090	68	2									
B3GNT2	10678	broad.mit.edu	37	chr2	62450044	62450044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtgctgtttctcaggtGggtaagtacttcctgcccag	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62450044	T	T	62450044	3	4	9	1	0	0	0	0	1	0	0	0	1262	1357	47	2	691	2	B3GNT2	2	62450044	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	437	62450044	180749329	2940	11091											
EHBP1	23301	broad.mit.edu	37	chr2	63101582	63101582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagtgaaaagaaaggcccCggctccaccagtcctctcac	10	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63101582	A	A	63101582	3	1	9	1	0	0	0	0	1	0	0	0	5015	652	23	1	1243	1	EHBP1	2	63101582	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	651538	63101582	180097791	2941	11092											
EHBP1	23301	broad.mit.edu	37	chr2	63215108	63215108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatactaacgaggagatccCtgaaggctttgttgtaggag	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63215108	A	A	63215108	3	1	9	1	0	0	0	0	1	0	0	0	5015	681	24	2	2818	2	EHBP1	2	63215108	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	113526	63215108	179984265	2942	11093											
C2orf86	51057	broad.mit.edu	37	chr2	63349067	63349067	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgttaaaaatccacacGggggattttaagtctgtatc	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63349067	T	T	63349067	1	4	9	0	1	0	0	0	0	0	0	0	2223	1131	39	1		1	C2orf86	2	63349067	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	133959	63349067	179850306	2943	11094											
MDH1	4190	broad.mit.edu	37	chr2	63816226	63816226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctctggccctcgcgccCttgagtggggtttcttgcac	11	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63816226	A	A	63816226	1	1	9	0	1	0	0	0	0	0	0	0	9501	696	24	2		2	MDH1	2	63816226	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	467159	63816226	179383147	2944	11095											
UGP2	7360	broad.mit.edu	37	chr2	64084991	64084991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagacctggatggatttcGgaagctatttcatagatttt	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64084991	T	T	64084991	3	4	9	1	0	0	0	0	1	0	0	0	17069	1116	39	1	186	1	UGP2	2	64084991	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	268765	64084991	179114382	2945	11096											
UGP2	7360	broad.mit.edu	37	chr2	64113445	64113445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgcacttgagactgatgtGgaggcactcactattttctg	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64113445	T	T	64113445	1	4	9	0	1	0	0	0	0	0	0	0	17069	1363	47	2		2	UGP2	2	64113445	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28454	64113445	179085928	2946	11097											
VPS54	51542	broad.mit.edu	37	chr2	64120530	64120530	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataacaaacacatcccatGgtcagatgaactacccagtt	5	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64120530	T	T	64120530	1	4	9	0	1	0	0	0	0	0	0	0	17343	1363	47	2		2	VPS54	2	64120530	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	7085	64120530	179078843	2947	11098											
VPS54	51542	broad.mit.edu	37	chr2	64120580	64120580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatcacctcttctgctccCaaatttcggccatatttagg	6	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64120580	A	A	64120580	3	1	9	1	0	0	0	0	1	0	0	0	17343	595	21	2	19	2	VPS54	2	64120580	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	64120580	179078793	2948	11099											
VPS54	51542	broad.mit.edu	37	chr2	64141336	64141336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcaataaatctgacagacGagtaagcatgtcagtagtaa	8	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64141336	T	T	64141336	3	4	9	1	0	0	0	0	1	0	0	0	17343	1058	37	3	647	3	VPS54	2	64141336	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20756	64141336	179058037	2949	11100											
VPS54	51542	broad.mit.edu	37	chr2	64141362	64141362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtcagtagtaacagatGggatgttatccacacactgg	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64141362	T	T	64141362	3	4	9	1	0	0	0	0	1	0	0	0	17343	1348	47	2	673	2	VPS54	2	64141362	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	64141362	179058011	2950	11101											
VPS54	51542	broad.mit.edu	37	chr2	64196180	64196180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgttttcattttaactcCgtaaaatacattttgacaga	4	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64196180	A	A	64196180	1	1	9	0	1	0	0	0	0	0	0	0	17343	667	23	1		1	VPS54	2	64196180	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54818	64196180	179003193	2951	11102											
VPS54	51542	broad.mit.edu	37	chr2	64211057	64211057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcgaatgtgttttgacGgatctacctctattttaaag	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64211057	T	T	64211057	3	4	9	1	0	0	0	0	1	0	0	0	17343	1116	39	1	2944	1	VPS54	2	64211057	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14877	64211057	178988316	2952	11103											
PELI1	57162	broad.mit.edu	37	chr2	64322083	64322083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacatagggaccaacagacCtacacataggacattcacga	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64322083	A	A	64322083	3	1	9	1	0	0	0	0	1	0	0	0	11815	681	24	2	250	2	PELI1	2	64322083	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111026	64322083	178877290	2953	11104											
HSPC159	29094	broad.mit.edu	37	chr2	64682528	64682528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagctctccagttcaagcGgacgtgtacttcccacgact	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64682528	T	T	64682528	2	4	9	1	0	0	0	0	0	0	0	1	7497	1103	39	1		1	HSPC159	2	64682528	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	360445	64682528	178516845	2954	11105											
HSPC159	29094	broad.mit.edu	37	chr2	64682711	64682711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattcatttttcttctccCacccttttcagatagttcca	2	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64682711	A	A	64682711	1	1	9	0	1	0	0	0	0	0	0	0	7497	609	21	2		2	HSPC159	2	64682711	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	183	64682711	178516662	2955	11106											
AFTPH	54812	broad.mit.edu	37	chr2	64779393	64779393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagaagcactaaccattcGggaaaacaataaaattaata	6	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64779393	T	T	64779393	3	4	9	1	0	0	0	0	1	0	0	0	364	1116	39	1	787	1	AFTPH	2	64779393	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96682	64779393	178419980	2956	11107											
AFTPH	54812	broad.mit.edu	37	chr2	64796765	64796765	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtgtgtagctcttcacGggcaataagaagcagcctgt	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64796765	T	T	64796765	2	4	9	1	0	0	0	0	0	0	0	1	364	1103	39	1		1	AFTPH	2	64796765	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17372	64796765	178402608	2957	11108											
AFTPH	54812	broad.mit.edu	37	chr2	64806672	64806672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcagtggccttactaaccCtttagatggtacgtctctcc	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64806672	A	A	64806672	3	1	9	1	0	0	0	0	1	0	0	0	364	681	24	2	2469	2	AFTPH	2	64806672	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9907	64806672	178392701	2958	11109											
SLC1A4	6509	broad.mit.edu	37	chr2	65228624	65228624	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggttgcagctttccgtacGgtaaggcttgatactttgct	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65228624	T	T	65228624	2	4	9	1	0	0	0	0	0	0	0	1	14547	1130	39	1		1	SLC1A4	2	65228624	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	421952	65228624	177970749	2959	11110											
CEP68	23177	broad.mit.edu	37	chr2	65299971	65299971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggagcagccaggccctcGgggtctcctctggactgctg	16	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65299971	T	T	65299971	3	4	9	1	0	0	0	0	1	0	0	0	3288	1116	39	1	1747	1	CEP68	2	65299971	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71347	65299971	177899402	2960	11111											
ACTR2	10097	broad.mit.edu	37	chr2	65469172	65469172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttcacctttcttgaccCgttgaagtagaataacaaaa	5	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65469172	A	A	65469172	1	1	9	0	1	0	0	0	0	0	0	0	211	667	23	1		1	ACTR2	2	65469172	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	169201	65469172	177730201	2961	11112											
SPRED2	200734	broad.mit.edu	37	chr2	65540821	65540821	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctgtatagtctccctcGgggtccgacatacagtgata	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65540821	T	T	65540821	2	4	9	1	0	0	0	0	0	0	0	1	15211	1103	39	1		1	SPRED2	2	65540821	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	71649	65540821	177658552	2962	11113											
MEIS1	4211	broad.mit.edu	37	chr2	66667101	66667101	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattcaatgaagatatagcCgtgttcgccaaacaggtcag	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66667101	A	A	66667101	2	1	9	1	0	0	0	0	0	0	0	1	9560	639	23	1		1	MEIS1	2	66667101	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1126280	66667101	176532272	2963	11114											
MEIS1	4211	broad.mit.edu	37	chr2	66795807	66795807	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacttttgtagtaagtcaaGgaacaccttataatcctgat	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66795807	T	T	66795807	4	4	9	1	0	0	0	0	0	1	0	0	9560	1001	35	2	1075	2	MEIS1	2	66795807	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	128706	66795807	176403566	2964	11115											
MEIS1	4211	broad.mit.edu	37	chr2	66795943	66795943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactccaagagtgtcatccCctcatcaacacaggtaaatc	6	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66795943	A	A	66795943	1	1	9	0	1	0	0	0	0	0	0	0	9560	638	22	2		2	MEIS1	2	66795943	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	136	66795943	176403430	2965	11116											
ETAA1	54465	broad.mit.edu	37	chr2	67636955	67636955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactaatatggcaaatctGggtgattaaaaaaagcaaaa	7	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67636955	T	T	67636955	1	4	9	0	1	0	0	0	0	0	0	0	5309	1363	47	2		2	ETAA1	2	67636955	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	841012	67636955	175562418	2966	11117											
WDR92	116143	broad.mit.edu	37	chr2	68368906	68368906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatcatctttttgccttGggtcccacaccttcacagtt	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68368906	T	T	68368906	3	4	9	1	0	0	0	0	1	0	0	0	17466	1348	47	2	656	2	WDR92	2	68368906	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	731951	68368906	174830467	2967	11118											
WDR92	116143	broad.mit.edu	37	chr2	68384397	68384397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgacccggcacccacctccCgaagcagcttcaggtccccg	9	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68384397	A	A	68384397	3	1	9	1	0	0	0	0	1	0	0	0	17466	652	23	1	926	1	WDR92	2	68384397	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15491	68384397	174814976	2968	11119											
PNO1	56902	broad.mit.edu	37	chr2	68389771	68389771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatagagaatgtgacacGgacaaggatagttttggctg	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68389771	T	T	68389771	3	4	9	1	0	0	0	0	1	0	0	0	12256	1116	39	1	614	1	PNO1	2	68389771	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5374	68389771	174809602	2969	11120											
PLEK	5341	broad.mit.edu	37	chr2	68607937	68607937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagagatgcctgggttcGggatatcaagaaggccatta	15	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68607937	T	T	68607937	3	4	9	1	0	0	0	0	1	0	0	0	12148	1116	39	1	291	1	PLEK	2	68607937	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	218166	68607937	174591436	2970	11121											
PLEK	5341	broad.mit.edu	37	chr2	68613799	68613799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccctttcctggacaaccCtgatgccttctactactttg	5	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68613799	A	A	68613799	3	1	9	1	0	0	0	0	1	0	0	0	12148	681	24	2	656	2	PLEK	2	68613799	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5862	68613799	174585574	2971	11122											
PLEK	5341	broad.mit.edu	37	chr2	68622934	68622934	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccatccagatggcctccCgaactgggaagtaaagagac	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68622934	A	A	68622934	2	1	9	1	0	0	0	0	0	0	0	1	12148	644	23	1		1	PLEK	2	68622934	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9135	68622934	174576439	2972	11123											
FBXO48	554251	broad.mit.edu	37	chr2	68691393	68691393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgtatctgcatccattGggtacatgattttttctggt	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68691393	T	T	68691393	3	4	9	1	0	0	0	0	1	0	0	0	5814	1348	47	2	55	2	FBXO48	2	68691393	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68459	68691393	174507980	2973	11124											
APLF	200558	broad.mit.edu	37	chr2	68740266	68740266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaacaccaaaatccccCgtgattaatttacctcatga	4	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68740266	A	A	68740266	2	1	9	1	0	0	0	0	0	0	0	1	778	639	23	1		1	APLF	2	68740266	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48873	68740266	174459107	2974	11125											
APLF	200558	broad.mit.edu	37	chr2	68740347	68740347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaagacccagatgactccCacaaatagtgtggtgagaaa	10	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68740347	A	A	68740347	2	1	9	1	0	0	0	0	0	0	0	1	778	581	21	2		2	APLF	2	68740347	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	68740347	174459026	2975	11126											
APLF	200558	broad.mit.edu	37	chr2	68804995	68804995	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgataatgttgggcaaccCaatgagtatgacctgaacga	10	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68804995	A	A	68804995	2	1	9	1	0	0	0	0	0	0	0	1	778	581	21	2		2	APLF	2	68804995	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64648	68804995	174394378	2976	11127											
BMP10	27302	broad.mit.edu	37	chr2	69092781	69092781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatctacagccacattcGgagacggccatgccttcgta	8	13	2	1	rs2231348		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69092781	T	T	69092781	2	4	9	1	0	0	0	0	0	0	0	1	1463	1103	39	1		1	BMP10	2	69092781	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	287786	69092781	174106592	2977	11128											
BMP10	27302	broad.mit.edu	37	chr2	69098349	69098349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgttaaagtcgacacCgtcttgctctgagaaaacat	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69098349	A	A	69098349	3	1	9	1	0	0	0	0	1	0	0	0	1463	652	23	1	1140	1	BMP10	2	69098349	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5568	69098349	174101024	2978	11129											
GKN2	200504	broad.mit.edu	37	chr2	69172542	69172542	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaaattcccaagatgccCaggagcccagcctttgcaca	8	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69172542	A	A	69172542	2	1	9	1	0	0	0	0	0	0	0	1	6489	581	21	2		2	GKN2	2	69172542	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	74193	69172542	174026831	2979	11130											
GKN2	200504	broad.mit.edu	37	chr2	69173558	69173558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagggttgtacttgaccCaggtgtatttgctggagaac	13	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69173558	A	A	69173558	3	1	9	1	0	0	0	0	1	0	0	0	6489	595	21	2	212	2	GKN2	2	69173558	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1016	69173558	174025815	2980	11131											
ANTXR1	84168	broad.mit.edu	37	chr2	69271911	69271911	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttattgttttctccaccCgaggaacaaccttaatgaaa	5	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69271911	A	A	69271911	2	1	9	1	0	0	0	0	0	0	0	1	711	644	23	1		1	ANTXR1	2	69271911	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	98353	69271911	173927462	2981	11132											
ANTXR1	84168	broad.mit.edu	37	chr2	69330009	69330009	+	Silent	SNP	C	A	A													tcgtgagaggaaacggcttcCgacatgcccgcaacgtggac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69330009	A	A	69330009	2	1	9	1	0	0	0	0	0	0	0	1	711	644	23	1		1	ANTXR1	2	69330009	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58098	69330009	173869364	2982	11133	69	2									
ANTXR1	84168	broad.mit.edu	37	chr2	69330018	69330018	+	Missense_Mutation	SNP	C	A	A													gaaacggcttccgacatgccCgcaacgtggacagggtcctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69330018	A	A	69330018	3	1	9	1	0	0	0	0	1	0	0	0	711	652	23	1	786	1	ANTXR1	2	69330018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	69330018	173869355	2983	11134	69	2									
ANTXR1	84168	broad.mit.edu	37	chr2	69408959	69408959	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaagaaaaagtggccaacGgtagacgcctcttattatgg	10	9	1	2	rs111544315	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69408959	T	T	69408959	2	4	9	1	0	0	0	0	0	0	0	1	711	1103	39	1		1	ANTXR1	2	69408959	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	78941	69408959	173790414	2984	11135											
GFPT1	2673	broad.mit.edu	37	chr2	69556872	69556872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttcttgcatggagatcCgatcatcacacatcataagg	8	10	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69556872	A	A	69556872	3	1	9	1	0	0	0	0	1	0	0	0	6409	652	23	1	578	1	GFPT1	2	69556872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147913	69556872	173642501	2985	11136											
GFPT1	2673	broad.mit.edu	37	chr2	69569310	69569310	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagcatggtaacttgttcCacaagcaataagaatcaaac	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69569310	A	A	69569310	4	1	9	1	0	0	0	0	0	1	0	0	6409	603	21	2	954	2	GFPT1	2	69569310	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12438	69569310	173630063	2986	11137											
AAK1	22848	broad.mit.edu	37	chr2	69706182	69706182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaagcagggaatcttcccCggtgagagaatctgagtcca	11	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69706182	A	A	69706182	3	1	9	1	0	0	0	0	1	0	0	0	16	652	23	1	316	1	AAK1	2	69706182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136872	69706182	173493191	2987	11138											
SNRNP27	11017	broad.mit.edu	37	chr2	70121109	70121109	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagttgtttccgggaagcggGactccaaatgggtcgcagtc	14	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70121109	T	T	70121109	1	4	9	0	1	0	0	0	0	0	0	0	14968	1189	41	3		3	SNRNP27	2	70121109	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	414927	70121109	173078264	2988	11139											
SNRNP27	11017	broad.mit.edu	37	chr2	70122240	70122240	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagaacgtaggcgttccCggtccacatcccgggagaga	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70122240	A	A	70122240	2	1	9	1	0	0	0	0	0	0	0	1	14968	643	23	1		1	SNRNP27	2	70122240	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1131	70122240	173077133	2989	11140											
ASPRV1	151516	broad.mit.edu	37	chr2	70188857	70188857	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccgcccctcctcacccCgccctcctgccagcatccgg	7	24	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70188857	A	A	70188857	1	1	9	0	1	0	0	0	0	0	0	0	1062	667	23	1		1	ASPRV1	2	70188857	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	66617	70188857	173010516	2990	11141											
PCBP1	5093	broad.mit.edu	37	chr2	70315635	70315635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgccatgatgcacggcGggaccggattcgccggaatt	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70315635	T	T	70315635	3	4	9	1	0	0	0	0	1	0	0	0	11594	1116	39	1	762	1	PCBP1	2	70315635	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126778	70315635	172883738	2991	11142											
C2orf42	54980	broad.mit.edu	37	chr2	70402794	70402795	+	Intron	DNP	GG	TT	TT													ctgtagcctattctagggaaGggaaacttaccctgcctttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	70402795	TT	TT	70402794	1	4	9	0	1	0	0	0	0	0	0	0	2188	1015	35	2		2	C2orf42	2	70402794	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	87159	70402794	172796579	2992	11143											
TIA1	7072	broad.mit.edu	37	chr2	70439856	70439856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggagtccttattcactGggtttcataccctgccactc	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70439856	T	T	70439856	3	4	9	1	0	0	0	0	1	0	0	0	16010	1357	47	2	8	2	TIA1	2	70439856	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37062	70439856	172759517	2993	11144											
PCYOX1	51449	broad.mit.edu	37	chr2	70504456	70504456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcactccttgcctatcacCgctggaacgggcacacagac	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70504456	A	A	70504456	3	1	9	1	0	0	0	0	1	0	0	0	11702	652	23	1	1472	1	PCYOX1	2	70504456	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64600	70504456	172694917	2994	11145											
TGFA	7039	broad.mit.edu	37	chr2	70680424	70680424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgccggcagatgagggccCggcaccactcacagtgtttt	13	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70680424	A	A	70680424	3	1	9	1	0	0	0	0	1	0	0	0	15938	652	23	1	89	1	TGFA	2	70680424	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175968	70680424	172518949	2995	11146											
ADD2	119	broad.mit.edu	37	chr2	70890610	70890610	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggaaggagggggttcGgaatttctttttcttctttg	12	5	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70890610	T	T	70890610	2	4	9	1	0	0	0	0	0	0	0	1	305	1124	39	1		1	ADD2	2	70890610	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	210186	70890610	172308763	2996	11147											
ADD2	119	broad.mit.edu	37	chr2	70905811	70905811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgcccctctctgcccGggtctgtcctgggctccccc	10	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70905811	T	T	70905811	1	4	9	0	1	0	0	0	0	0	0	0	305	1131	39	1		1	ADD2	2	70905811	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15201	70905811	172293562	2997	11148											
ANKRD53	79998	broad.mit.edu	37	chr2	71209106	71209106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccctgcacctggcagccCgtgacggcttgctggactgt	13	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71209106	A	A	71209106	3	1	9	1	0	0	0	0	1	0	0	0	679	652	23	1	672	1	ANKRD53	2	71209106	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	303295	71209106	171990267	2998	11149											
TEX261	113419	broad.mit.edu	37	chr2	71215725	71215725	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccacatcctgcctgcatGggggtcagtatatcttctga	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71215725	T	T	71215725	1	4	9	0	1	0	0	0	0	0	0	0	15904	1363	47	2		2	TEX261	2	71215725	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	6619	71215725	171983648	2999	11150											
TEX261	113419	broad.mit.edu	37	chr2	71215809	71215809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatccctaagcgtttgcccCgcttgcctttggtgaaataa	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71215809	A	A	71215809	3	1	9	1	0	0	0	0	1	0	0	0	15904	652	23	1	82	1	TEX261	2	71215809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	71215809	171983564	3000	11151											
NAGK	55577	broad.mit.edu	37	chr2	71300606	71300606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttagccctctctgctccCtgcagcctactggatcgcac	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71300606	A	A	71300606	1	1	9	0	1	0	0	0	0	0	0	0	10236	696	24	2		2	NAGK	2	71300606	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	84797	71300606	171898767	3001	11152											
NAGK	55577	broad.mit.edu	37	chr2	71300655	71300655	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaaatagtgtttgactcCattgacaacctagaggcggc	11	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71300655	A	A	71300655	2	1	9	1	0	0	0	0	0	0	0	1	10236	581	21	2		2	NAGK	2	71300655	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	71300655	171898718	3002	11153											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71368400	71368400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaaagaaaaacctaaagaGgatgcatatgaatataaaaa	7	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71368400	T	T	71368400	3	4	9	1	0	0	0	0	1	0	0	0	9819	991	35	2	1373	2	MPHOSPH10	2	71368400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67745	71368400	171830973	3003	11154											
ZNF638	27332	broad.mit.edu	37	chr2	71576929	71576929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgagtcctccaataatcGgtcctttttctcagttgaga	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71576929	T	T	71576929	3	4	9	1	0	0	0	0	1	0	0	0	18182	1116	39	1	847	1	ZNF638	2	71576929	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	208529	71576929	171622444	3004	11155											
ZNF638	27332	broad.mit.edu	37	chr2	71660234	71660234	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaaataaatgaataaatcGatgaacacaactggagatta	6	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71660234	T	T	71660234	1	4	9	0	1	0	0	0	0	0	0	0	18182	1073	37	3		3	ZNF638	2	71660234	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	83305	71660234	171539139	3005	11156											
DYSF	8291	broad.mit.edu	37	chr2	71762330	71762330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatcccagacttcagctcGgggtagggaggggctgttct	15	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71762330	T	T	71762330	1	4	9	0	1	0	0	0	0	0	0	0	4899	1131	39	1		1	DYSF	2	71762330	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	102096	71762330	171437043	3006	11157											
DYSF	8291	broad.mit.edu	37	chr2	71791284	71791284	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccaagtcctcttctccCggcggggtgccaactactgt	9	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71791284	A	A	71791284	2	1	9	1	0	0	0	0	0	0	0	1	4899	643	23	1		1	DYSF	2	71791284	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28954	71791284	171408089	3007	11158											
DYSF	8291	broad.mit.edu	37	chr2	71801313	71801313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccggcctctgagtctgccCcttctcttgtgcagcacagg	10	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71801313	A	A	71801313	1	1	9	0	1	0	0	0	0	0	0	0	4899	638	22	2		2	DYSF	2	71801313	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10029	71801313	171398060	3008	11159											
DYSF	8291	broad.mit.edu	37	chr2	71827841	71827841	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttggtctagggtgcagacGagtttatgggtcgctgcatc	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71827841	T	T	71827841	4	4	9	1	0	0	0	0	0	1	0	0	4899	1059	37	3	4038	3	DYSF	2	71827841	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26528	71827841	171371532	3009	11160											
DYSF	8291	broad.mit.edu	37	chr2	71883440	71883440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaatcctcgaagacgtcCctaacccaggtgggcctaag	11	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71883440	A	A	71883440	1	1	9	0	1	0	0	0	0	0	0	0	4899	638	22	2		2	DYSF	2	71883440	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55599	71883440	171315933	3010	11161											
EXOC6B	23233	broad.mit.edu	37	chr2	72719532	72719532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacaggtttgttgatttcCgaatcatgtcatcaacttca	7	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72719532	A	A	72719532	3	1	9	1	0	0	0	0	1	0	0	0	5351	652	23	1	883	1	EXOC6B	2	72719532	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	836092	72719532	170479841	3011	11162											
EXOC6B	23233	broad.mit.edu	37	chr2	72968402	72968402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaccccaacacaggacGgagaaacagtatctcttaga	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72968402	T	T	72968402	1	4	9	0	1	0	0	0	0	0	0	0	5351	1131	39	1		1	EXOC6B	2	72968402	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	248870	72968402	170230971	3012	11163											
EXOC6B	23233	broad.mit.edu	37	chr2	72968484	72968484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagttcagttatagagtcCacaaagccctggtaatgaaa	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72968484	A	A	72968484	2	1	9	1	0	0	0	0	0	0	0	1	5351	581	21	2		2	EXOC6B	2	72968484	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	72968484	170230889	3013	11164											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73303311	73303311	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttcacggggtggggaCtgcaaagacatacaagagat	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73303311	A	A	73303311	5	1	9	1	0	0	0	0	0	0	1	0	13005	579	20	3	401	3	RAB11FIP5	2	73303311	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	334827	73303311	169896062	3014	11165											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73316394	73316394	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggatggtgacttcaatctCgccgcgttccttctccttct	8	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73316394	A	A	73316394	4	1	9	1	0	0	0	0	0	1	0	0	13005	893	31	3	1496	3	RAB11FIP5	2	73316394	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13083	73316394	169882979	3015	11166											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73316410	73316410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcgccgcgttccttctcCttcttgcctggcttggagtg	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73316410	A	A	73316410	3	1	9	1	0	0	0	0	1	0	0	0	13005	680	24	2	1512	2	RAB11FIP5	2	73316410	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	73316410	169882963	3016	11167											
SMYD5	10322	broad.mit.edu	37	chr2	73450227	73450227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccaatggccaaggaatcGggaccaggttagaatgttcc	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73450227	T	T	73450227	3	4	9	1	0	0	0	0	1	0	0	0	14939	1116	39	1	799	1	SMYD5	2	73450227	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	133817	73450227	169749146	3017	11168											
CCT7	10574	broad.mit.edu	37	chr2	73476906	73476906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaagctgcctggcctcGggaaccttcactgctagatc	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73476906	T	T	73476906	1	4	9	0	1	0	0	0	0	0	0	0	2989	1131	39	1		1	CCT7	2	73476906	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26679	73476906	169722467	3018	11169											
FBXO41	150726	broad.mit.edu	37	chr2	73491462	73491462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagactgcggggtggcGggccacgaagcgccagtccc	16	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73491462	T	T	73491462	3	4	9	1	0	0	0	0	1	0	0	0	5807	1116	39	1	909	1	FBXO41	2	73491462	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14556	73491462	169707911	3019	11170											
ALMS1	7840	broad.mit.edu	37	chr2	73676635	73676635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgaccagaagactgtccCaacaccaacagtaccttcag	7	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73676635	A	A	73676635	3	1	9	1	0	0	0	0	1	0	0	0	535	594	21	2	3008	2	ALMS1	2	73676635	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	185173	73676635	169522738	3020	11171											
ALMS1	7840	broad.mit.edu	37	chr2	73677088	73677088	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaacctcaacttcctactCacaacatagagaaaagccca	4	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73677088	A	A	73677088	4	1	9	1	0	0	0	0	0	1	0	0	535	838	29	3	3461	3	ALMS1	2	73677088	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	453	73677088	169522285	3021	11172											
ALMS1	7840	broad.mit.edu	37	chr2	73717931	73717931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagaaaaccattctcccCttcctcaaggtcaggattct	7	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73717931	A	A	73717931	3	1	9	1	0	0	0	0	1	0	0	0	535	681	24	2	8880	2	ALMS1	2	73717931	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40843	73717931	169481442	3022	11173											
ALMS1	7840	broad.mit.edu	37	chr2	73786220	73786220	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataggaagaagacagttccCgaggaagcctggccaaacaa	11	10	0	2	rs78108069	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73786220	A	A	73786220	2	1	9	1	0	0	0	0	0	0	0	1	535	639	23	1		1	ALMS1	2	73786220	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68289	73786220	169413153	3023	11174											
ALMS1	7840	broad.mit.edu	37	chr2	73835568	73835568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaccctggtaacctcccCgatttctgtcctttcactgg	7	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73835568	A	A	73835568	1	1	9	0	1	0	0	0	0	0	0	0	535	667	23	1		1	ALMS1	2	73835568	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49348	73835568	169363805	3024	11175											
TPRKB	51002	broad.mit.edu	37	chr2	73961619	73961619	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttcttctcaagtctccCgcattttttacatctttaaa	3	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73961619	A	A	73961619	2	1	9	1	0	0	0	0	0	0	0	1	16544	639	23	1		1	TPRKB	2	73961619	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	126051	73961619	169237754	3025	11176											
DUSP11	8446	broad.mit.edu	37	chr2	73994355	73994355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacaaaacaacataatttGggtcatttatatacgaaaag	5	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73994355	T	T	73994355	1	4	9	0	1	0	0	0	0	0	0	0	4851	1363	47	2		2	DUSP11	2	73994355	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32736	73994355	169205018	3026	11177											
C2orf78	388960	broad.mit.edu	37	chr2	74043271	74043271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagttttccatgcactcGggaaaaagatcgatatgaaa	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74043271	T	T	74043271	3	4	9	1	0	0	0	0	1	0	0	0	2217	1116	39	1	1931	1	C2orf78	2	74043271	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48916	74043271	169156102	3027	11178											
STAMBP	10617	broad.mit.edu	37	chr2	74086505	74086505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccaggagtgagtatagaGggcatggttctgggtgtttc	16	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74086505	T	T	74086505	1	4	9	0	1	0	0	0	0	0	0	0	15368	1015	35	2		2	STAMBP	2	74086505	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43234	74086505	169112868	3028	11179											
STAMBP	10617	broad.mit.edu	37	chr2	74086517	74086517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatagagggcatggttctGggtgtttcaagggggtagta	17	3	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74086517	T	T	74086517	1	4	9	0	1	0	0	0	0	0	0	0	15368	1363	47	2		2	STAMBP	2	74086517	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	74086517	169112856	3029	11180											
SLC4A5	57835	broad.mit.edu	37	chr2	74481733	74481733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaggagtacaagcttctGgttaccacttacatcatcta	6	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74481733	T	T	74481733	1	4	9	0	1	0	0	0	0	0	0	0	14771	1363	47	2		2	SLC4A5	2	74481733	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	395216	74481733	168717640	3030	11181											
SLC4A5	57835	broad.mit.edu	37	chr2	74535120	74535120	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttggaggagaaggtggaacGagtggtgaagctcatgctgt	18	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74535120	T	T	74535120	1	4	9	0	1	0	0	0	0	0	0	0	14771	1073	37	3		3	SLC4A5	2	74535120	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53387	74535120	168664253	3031	11182											
SLC4A5	57835	broad.mit.edu	37	chr2	74542083	74542083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctcacctttctgatccGgaaatctcctcctgtggtta	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74542083	T	T	74542083	3	4	9	1	0	0	0	0	1	0	0	0	14771	1116	39	1	3449	1	SLC4A5	2	74542083	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6963	74542083	168657290	3032	11183											
DCTN1	1639	broad.mit.edu	37	chr2	74597182	74597182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaccatctcctcagcaccCagagcagcatccacctgtgt	6	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74597182	A	A	74597182	2	1	9	1	0	0	0	0	0	0	0	1	4339	581	21	2		2	DCTN1	2	74597182	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55099	74597182	168602191	3033	11184											
DCTN1	1639	broad.mit.edu	37	chr2	74598236	74598236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttgctttgtcttctgccCgtttcagtctcagggtctct	9	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74598236	A	A	74598236	3	1	9	1	0	0	0	0	1	0	0	0	4339	652	23	1	3219	1	DCTN1	2	74598236	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1054	74598236	168601137	3034	11185											
DCTN1	1639	broad.mit.edu	37	chr2	74598249	74598249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcccgtttcagtctcaGggtctctagtttctcctcca	7	14	5	0	rs13017086		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74598249	T	T	74598249	3	4	9	1	0	0	0	0	1	0	0	0	4339	991	35	2	3232	2	DCTN1	2	74598249	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	74598249	168601124	3035	11186											
RTKN	6242	broad.mit.edu	37	chr2	74654604	74654604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagctctgcagtgcttccCgactttctgtctgaagggtg	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74654604	A	A	74654604	3	1	9	1	0	0	0	0	1	0	0	0	13833	652	23	1	501	1	RTKN	2	74654604	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56355	74654604	168544769	3036	11187											
RTKN	6242	broad.mit.edu	37	chr2	74659664	74659664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgtagctgaggatgcGgctgttgcacactagcaggc	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74659664	T	T	74659664	3	4	9	1	0	0	0	0	1	0	0	0	13833	1116	39	1	1494	1	RTKN	2	74659664	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5060	74659664	168539709	3037	11188											
RTKN	6242	broad.mit.edu	37	chr2	74668918	74668918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccctggccacggtgaccCggctccggtggtttcgggag	16	14	0	1	rs149287379		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74668918	A	A	74668918	3	1	9	1	0	0	0	0	1	0	0	0	13833	652	23	1	1789	1	RTKN	2	74668918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9254	74668918	168530455	3038	11189											
INO80B	83444	broad.mit.edu	37	chr2	74682179	74682179	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggctccagtttttccgcGgggcggaaaaggcgtgtctg	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74682179	T	T	74682179	1	4	9	0	1	0	0	0	0	0	0	0	7817	1131	39	1		1	INO80B	2	74682179	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	13261	74682179	168517194	3039	11190											
PCGF1	84759	broad.mit.edu	37	chr2	74732686	74732686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggactactcacatgctgaGggtttagcatcaagcggtga	13	8	2	2	rs143464189		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74732686	T	T	74732686	3	4	9	1	0	0	0	0	1	0	0	0	11668	1000	35	2	147	2	PCGF1	2	74732686	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50507	74732686	168466687	3040	11191											
DQX1	165545	broad.mit.edu	37	chr2	74750442	74750442	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctcactcacacttcGgagctccagtcctgagtcga	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74750442	T	T	74750442	2	4	9	1	0	0	0	0	0	0	0	1	4791	1124	39	1		1	DQX1	2	74750442	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17756	74750442	168448931	3041	11192											
AUP1	550	broad.mit.edu	37	chr2	74755078	74755078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgaccacctgttgtacacGgagtgcaaactcctcattcg	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74755078	T	T	74755078	3	4	9	1	0	0	0	0	1	0	0	0	1225	1116	39	1	529	1	AUP1	2	74755078	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4636	74755078	168444295	3042	11193											
AUP1	550	broad.mit.edu	37	chr2	74755196	74755196	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggctgtcaccattcccCactttggtacctctttgcat	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74755196	A	A	74755196	1	1	9	0	1	0	0	0	0	0	0	0	1225	609	21	2		2	AUP1	2	74755196	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	118	74755196	168444177	3043	11194											
AUP1	550	broad.mit.edu	37	chr2	74756022	74756022	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatctccatgaagcccCgagaccagcacacaaagctg	7	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74756022	A	A	74756022	1	1	9	0	1	0	0	0	0	0	0	0	1225	652	23	1		1	AUP1	2	74756022	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	826	74756022	168443351	3044	11195											
LOXL3	84695	broad.mit.edu	37	chr2	74762677	74762677	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcccaaaacacaggctttGagacaacagcctcggctccc	8	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74762677	T	T	74762677	1	4	9	0	1	0	0	0	0	0	0	0	8988	1305	45	3		3	LOXL3	2	74762677	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6655	74762677	168436696	3045	11196											
C2orf65	130951	broad.mit.edu	37	chr2	74808788	74808788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagcctaaatatcttttGgggattatgtacttggatta	8	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74808788	T	T	74808788	1	4	9	0	1	0	0	0	0	0	0	0	2206	1363	47	2		2	C2orf65	2	74808788	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46111	74808788	168390585	3046	11197											
C2orf65	130951	broad.mit.edu	37	chr2	74855397	74855397	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaaaaggttcagagtcaaGaatctgttcagttgttcccc	8	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74855397	C	C	74855397	1	2	9	0	1	0	0	0	0	0	0	0	2206	957	33	4		4	C2orf65	2	74855397	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46609	74855397	168343976	3047	11198											
SEMA4F	10505	broad.mit.edu	37	chr2	74883759	74883759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacactttatgttggcgccCgggacaccatcttcgcttta	8	13	1	0	rs140925977		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74883759	A	A	74883759	2	1	9	1	0	0	0	0	0	0	0	1	14148	643	23	1		1	SEMA4F	2	74883759	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28362	74883759	168315614	3048	11199											
SEMA4F	10505	broad.mit.edu	37	chr2	74900944	74900944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaagtcccacgggtggccCgtgtgtgtgcggtgagaccc	15	11	0	1	rs143261584		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74900944	A	A	74900944	3	1	9	1	0	0	0	0	1	0	0	0	14148	652	23	1	837	1	SEMA4F	2	74900944	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17185	74900944	168298429	3049	11200											
SEMA4F	10505	broad.mit.edu	37	chr2	74901713	74901713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggcctgagcatggccGggcctccagtgtcctgcagg	15	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74901713	T	T	74901713	3	4	9	1	0	0	0	0	1	0	0	0	14148	1116	39	1	941	1	SEMA4F	2	74901713	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	769	74901713	168297660	3050	11201											
SEMA4F	10505	broad.mit.edu	37	chr2	74906585	74906585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggcagccaggaacctcGggccttagcctctttaggaa	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74906585	T	T	74906585	1	4	9	0	1	0	0	0	0	0	0	0	14148	1131	39	1		1	SEMA4F	2	74906585	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4872	74906585	168292788	3051	11202											
HK2	3099	broad.mit.edu	37	chr2	75094807	75094807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttggagggaccaacttcCgtgtgctttgggtgaaagta	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75094807	A	A	75094807	3	1	9	1	0	0	0	0	1	0	0	0	7258	652	23	1	281	1	HK2	2	75094807	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	188222	75094807	168104566	3052	11203											
HK2	3099	broad.mit.edu	37	chr2	75108883	75108883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggaggaacaaatttccGggtcctgctggtccgtgttc	12	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75108883	T	T	75108883	3	4	9	1	0	0	0	0	1	0	0	0	7258	1116	39	1	1658	1	HK2	2	75108883	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14076	75108883	168090490	3053	11204											
HK2	3099	broad.mit.edu	37	chr2	75118006	75118006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtcagaggatggcagcGggaagggggcggcgctcatc	19	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75118006	T	T	75118006	3	4	9	1	0	0	0	0	1	0	0	0	7258	1116	39	1	2762	1	HK2	2	75118006	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9123	75118006	168081367	3054	11205											
FAM176A	84141	broad.mit.edu	37	chr2	75720278	75720278	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacaatattagcagagctGggttcagttccttgtgccca	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75720278	T	T	75720278	1	4	9	0	1	0	0	0	0	0	0	0	5544	1363	47	2		2	FAM176A	2	75720278	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	602272	75720278	167479095	3055	11206											
C2orf3	6936	broad.mit.edu	37	chr2	75916183	75916183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaatcaatcaactgaactCgtattaggggatttaaaagc	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75916183	A	A	75916183	3	1	9	1	0	0	0	0	1	0	0	0	2184	884	31	3	869	3	C2orf3	2	75916183	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	195905	75916183	167283190	3056	11207											
C2orf3	6936	broad.mit.edu	37	chr2	75929312	75929312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcctaatcttcatatattGgtaaatccatacttgattcc	3	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75929312	T	T	75929312	1	4	9	0	1	0	0	0	0	0	0	0	2184	1363	47	2		2	C2orf3	2	75929312	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13129	75929312	167270061	3057	11208											
C2orf3	6936	broad.mit.edu	37	chr2	75929467	75929467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggtatgttgtacatcCaaagaaatatagtcatcttg	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75929467	A	A	75929467	3	1	9	1	0	0	0	0	1	0	0	0	2184	593	21	2	1928	2	C2orf3	2	75929467	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	155	75929467	167269906	3058	11209											
C2orf3	6936	broad.mit.edu	37	chr2	75933755	75933755	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttatcctcttcatctgtGgacacatcaagggttctgga	8	9	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75933755	T	T	75933755	2	4	9	1	0	0	0	0	0	0	0	1	2184	1335	47	2		2	C2orf3	2	75933755	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4288	75933755	167265618	3059	11210											
REG3A	5068	broad.mit.edu	37	chr2	79384760	79384760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggagggatttctctccCatgcaaagtaattcatcaca	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384760	A	A	79384760	3	1	9	1	0	0	0	0	1	0	0	0	13320	595	21	2	137	2	REG3A	2	79384760	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3451005	79384760	163814613	3060	11211											
CTNNA2	1496	broad.mit.edu	37	chr2	80390143	80390143	+	Intron	DEL	C	-	-													attgaattttgataggccttCcataaagtttgattccatta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80390143	-	-	80390143	6	5	9	0	1	1	0	1	0	0	0	0	4047	870	30	0		0	CTNNA2	2	80390143	Intron	DEL	C	TCGA-05-4396-01A-21D-1855-08	1005383	80390143	162809230	3061	11212											
CTNNA2	1496	broad.mit.edu	37	chr2	80801386	80801386	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgagttcatcgatgcctctCgcctggtgtatgatggcgtt	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80801386	G	G	80801386	3	3	9	1	0	0	0	0	1	0	0	0	4047	884	31	4	1678	4	CTNNA2	2	80801386	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	411243	80801386	162397987	3062	11213											
CTNNA2	1496	broad.mit.edu	37	chr2	80801408	80801408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgtatgatggcgttcGggacatcagaaaggctgtgc	15	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80801408	T	T	80801408	3	4	9	1	0	0	0	0	1	0	0	0	4047	1116	39	1	1700	1	CTNNA2	2	80801408	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	80801408	162397965	3063	11214											
CTNNA2	1496	broad.mit.edu	37	chr2	80874837	80874837	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggacagcagctgtcaactCacctgttgtgtcttggaaga	12	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80874837	A	A	80874837	4	1	9	1	0	0	0	0	0	1	0	0	4047	838	29	3	2416	3	CTNNA2	2	80874837	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73429	80874837	162324536	3064	11215											
SUCLG1	8802	broad.mit.edu	37	chr2	84652652	84652652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccagcaataattgcccCggcatgacccattcttctcc	5	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84652652	A	A	84652652	3	1	9	1	0	0	0	0	1	0	0	0	15482	652	23	1	147	1	SUCLG1	2	84652652	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3777815	84652652	158546721	3065	11216											
C2orf89	129293	broad.mit.edu	37	chr2	85097471	85097471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctaagacaggcactccacGggacttaatgtccacttcag	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85097471	T	T	85097471	3	4	9	1	0	0	0	0	1	0	0	0	2225	1116	39	1	843	1	C2orf89	2	85097471	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	444819	85097471	158101902	3066	11217											
TGOLN2	10618	broad.mit.edu	37	chr2	85554163	85554163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgctgggcccgtctattGggccctgctcctctgcaccg	11	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85554163	T	T	85554163	3	4	9	1	0	0	0	0	1	0	0	0	15959	1348	47	2	633	2	TGOLN2	2	85554163	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	456692	85554163	157645210	3067	11218			12	15	59127152	6	6	519	N	G_C	1.574353e-05
TGOLN2	10618	broad.mit.edu	37	chr2	85554299	85554299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtcttttggggtctggcCgtccgcacccgacttattag	12	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85554299	A	A	85554299	3	1	9	1	0	0	0	0	1	0	0	0	15959	652	23	1	769	1	TGOLN2	2	85554299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136	85554299	157645074	3068	11219			12	15	59127152	6	6	519	N	G_C	1.574353e-05
TGOLN2	10618	broad.mit.edu	37	chr2	85554319	85554319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccgcacccgacttattaGggacatcttttgtggtctgc	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85554319	T	T	85554319	3	4	9	1	0	0	0	0	1	0	0	0	15959	1000	35	2	789	2	TGOLN2	2	85554319	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	85554319	157645054	3069	11220			12	15	59127152	6	6	519	N	G_C	1.574353e-05
TGOLN2	10618	broad.mit.edu	37	chr2	85554435	85554435	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtctgcgcctccgcaccCgatttgccagtgctgtcttt	12	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85554435	A	A	85554435	2	1	9	1	0	0	0	0	0	0	0	1	15959	639	23	1		1	TGOLN2	2	85554435	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	116	85554435	157644938	3070	11221			12	15	59127152	6	6	519	N	G_C	1.574353e-05
TGOLN2	10618	broad.mit.edu	37	chr2	85554584	85554584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttggagctgtctttttGggtctttgcctccgcacccg	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85554584	T	T	85554584	3	4	9	1	0	0	0	0	1	0	0	0	15959	1357	47	2	1054	2	TGOLN2	2	85554584	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149	85554584	157644789	3071	11222			12	15	59127152	6	6	519	N	G_C	1.574353e-05
TGOLN2	10618	broad.mit.edu	37	chr2	85554681	85554681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttggagtctgcggctcCggatgcgacttggtagagcc	14	10	2	1	rs61743616	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85554681	A	A	85554681	2	1	9	1	0	0	0	0	0	0	0	1	15959	639	23	1		1	TGOLN2	2	85554681	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	97	85554681	157644692	3072	11223			12	15	59127152	6	6	519	N	G_C	1.574353e-05
RETSAT	54884	broad.mit.edu	37	chr2	85573110	85573110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttacctggcaggcagcGggcgttccccggcagtaggt	14	13	0	0	rs146678348	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85573110	T	T	85573110	3	4	9	1	0	0	0	0	1	0	0	0	13346	1116	39	1	751	1	RETSAT	2	85573110	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18429	85573110	157626263	3073	11224											
RETSAT	54884	broad.mit.edu	37	chr2	85577866	85577866	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaagaaacccagccttatcGagaacaaactctgggtcctc	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85577866	T	T	85577866	1	4	9	0	1	0	0	0	0	0	0	0	13346	1073	37	3		3	RETSAT	2	85577866	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4756	85577866	157621507	3074	11225											
CAPG	822	broad.mit.edu	37	chr2	85628668	85628668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctggtacttgaggcccCgtgggaagtagctcatgaag	14	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85628668	A	A	85628668	3	1	9	1	0	0	0	0	1	0	0	0	2647	652	23	1	739	1	CAPG	2	85628668	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50802	85628668	157570705	3075	11226											
CAPG	822	broad.mit.edu	37	chr2	85629030	85629030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcttcagcttctccaccCgccacacatgcaggcctgga	9	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85629030	A	A	85629030	3	1	9	1	0	0	0	0	1	0	0	0	2647	652	23	1	1004	1	CAPG	2	85629030	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	362	85629030	157570343	3076	11227											
TMEM150A	129303	broad.mit.edu	37	chr2	85828987	85828987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagctcctgttgccccccGggcacccccctttactcaca	6	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85828987	T	T	85828987	1	4	9	0	1	0	0	0	0	0	0	0	16190	1131	39	1		1	TMEM150A	2	85828987	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	199957	85828987	157370386	3077	11228											
USP39	10713	broad.mit.edu	37	chr2	85850772	85850772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacccttccctacaggccGgggtttgaagtctcacgcct	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85850772	T	T	85850772	3	4	9	1	0	0	0	0	1	0	0	0	17197	1116	39	1	451	1	USP39	2	85850772	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21785	85850772	157348601	3078	11229											
ST3GAL5	8869	broad.mit.edu	37	chr2	86108029	86108029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatctatgttggacatgcGggcagagtgtcagatgatgt	13	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86108029	T	T	86108029	1	4	9	0	1	0	0	0	0	0	0	0	15336	1131	39	1		1	ST3GAL5	2	86108029	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	257257	86108029	157091344	3079	11230											
POLR1A	25885	broad.mit.edu	37	chr2	86254602	86254602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcccctgacgaccttccCgaccacaaggcaggcagaag	10	18	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86254602	A	A	86254602	3	1	9	1	0	0	0	0	1	0	0	0	12304	652	23	1	59	1	POLR1A	2	86254602	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146573	86254602	156944771	3080	11231											
POLR1A	25885	broad.mit.edu	37	chr2	86258546	86258546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccggcgctccatggcctcGggcccctggggctcctggct	14	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86258546	T	T	86258546	2	4	9	1	0	0	0	0	0	0	0	1	12304	1103	39	1		1	POLR1A	2	86258546	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3944	86258546	156940827	3081	11232											
POLR1A	25885	broad.mit.edu	37	chr2	86266540	86266540	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcacgggcacgctcatcatGggtgtcttgatgttggcgct	14	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86266540	C	C	86266540	2	2	9	1	0	0	0	0	0	0	0	1	12304	1335	47	4		4	POLR1A	2	86266540	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7994	86266540	156932833	3082	11233											
POLR1A	25885	broad.mit.edu	37	chr2	86266580	86266580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaccatgagaatctccCgcaacctgtcacagaataag	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86266580	A	A	86266580	3	1	9	1	0	0	0	0	1	0	0	0	12304	652	23	1	1452	1	POLR1A	2	86266580	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	86266580	156932793	3083	11234											
POLR1A	25885	broad.mit.edu	37	chr2	86325657	86325657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactatcggcatggtaactaGgacaacatacaagcatctct	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86325657	T	T	86325657	1	4	9	0	1	0	0	0	0	0	0	0	12304	1015	35	2		2	POLR1A	2	86325657	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	59077	86325657	156873716	3084	11235											
POLR1A	25885	broad.mit.edu	37	chr2	86325778	86325778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagactgcttgtagggcccCgacttccagaaccctcagct	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86325778	A	A	86325778	3	1	9	1	0	0	0	0	1	0	0	0	12304	652	23	1	4902	1	POLR1A	2	86325778	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	121	86325778	156873595	3085	11236											
IMMT	10989	broad.mit.edu	37	chr2	86371512	86371512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagccagtcctgtgccactCgtctggattcccccttcagc	8	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86371512	A	A	86371512	3	1	9	1	0	0	0	0	1	0	0	0	7788	884	31	3	124	3	IMMT	2	86371512	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45734	86371512	156827861	3086	11237											
IMMT	10989	broad.mit.edu	37	chr2	86400876	86400876	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagagatttttagtggaccCgactgaatcttggaaataaa	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86400876	A	A	86400876	2	1	9	1	0	0	0	0	0	0	0	1	7788	639	23	1		1	IMMT	2	86400876	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29364	86400876	156798497	3087	11238											
KDM3A	55818	broad.mit.edu	37	chr2	86678285	86678285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacttctgttcgctttctGggagatcaacaaagagtatt	8	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86678285	T	T	86678285	2	4	9	1	0	0	0	0	0	0	0	1	8196	1335	47	2		2	KDM3A	2	86678285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	277409	86678285	156521088	3088	11239											
KDM3A	55818	broad.mit.edu	37	chr2	86701928	86701928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaaacatggtgtgttgcGggtagaaggcttcttaacac	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86701928	T	T	86701928	3	4	9	1	0	0	0	0	1	0	0	0	8196	1116	39	1	1796	1	KDM3A	2	86701928	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23643	86701928	156497445	3089	11240											
KDM3A	55818	broad.mit.edu	37	chr2	86709168	86709168	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagcacaattttgacaccCgtaagcaacaacaattctgg	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86709168	A	A	86709168	2	1	9	1	0	0	0	0	0	0	0	1	8196	639	23	1		1	KDM3A	2	86709168	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7240	86709168	156490205	3090	11241											
RNF103	7844	broad.mit.edu	37	chr2	86831748	86831748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaattagtaaaccatgacCaaggtatgtactgagaaaca	7	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86831748	A	A	86831748	3	1	9	1	0	0	0	0	1	0	0	0	13534	594	21	2	785	2	RNF103	2	86831748	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122580	86831748	156367625	3091	11242											
RMND5A	64795	broad.mit.edu	37	chr2	86980603	86980603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctggtctttctgtagaccCaagtcagaaggaaccatttg	9	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86980603	A	A	86980603	3	1	9	1	0	0	0	0	1	0	0	0	13508	594	21	2	457	2	RMND5A	2	86980603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148855	86980603	156218770	3092	11243											
RGPD1	400966	broad.mit.edu	37	chr2	87220319	87220319	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaatctttgaagaaccttcGagaaaggagaaacacagacc	9	9	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87220319	T	T	87220319	1	4	9	0	1	0	0	0	0	0	0	0	13393	1073	37	3		3	RGPD1	2	87220319	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	239716	87220319	155979054	3093	11244											
RMND5A	64795	broad.mit.edu	37	chr2	87373678	87373678	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatggctcttcctgtaggacGaggaatgtttaccttttttt	9	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87373678	T	T	87373678	1	4	9	0	1	0	0	0	0	0	0	0	13508	1073	37	3		3	RMND5A	2	87373678	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	153359	87373678	155825695	3094	11245											
RMND5A	64795	broad.mit.edu	37	chr2	87376973	87376973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatagggcgtgcccctcctcGgaacacaacagtagacctta	10	13	0	1	rs151201248	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87376973	T	T	87376973	1	4	9	0	1	0	0	0	0	0	0	0	13508	1131	39	1		1	RMND5A	2	87376973	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3295	87376973	155822400	3095	11246											
RMND5A	64795	broad.mit.edu	37	chr2	87377179	87377179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtggctctgggtttgaatGggtaccttaccaagctggcg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87377179	T	T	87377179	1	4	9	0	1	0	0	0	0	0	0	0	13508	1363	47	2		2	RMND5A	2	87377179	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	206	87377179	155822194	3096	11247											
RMND5A	64795	broad.mit.edu	37	chr2	87565628	87565628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagttaggacccagacGgaaccatggaagccccagca	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87565628	T	T	87565628	1	4	9	0	1	0	0	0	0	0	0	0	13508	1131	39	1		1	RMND5A	2	87565628	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	188449	87565628	155633745	3097	11248											
RMND5A	64795	broad.mit.edu	37	chr2	88016297	88016297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcgaaggaaacttaccCaaagggaagtctgtgagtat	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88016297	A	A	88016297	1	1	9	0	1	0	0	0	0	0	0	0	13508	609	21	2		2	RMND5A	2	88016297	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	450669	88016297	155183076	3098	11249											
KRCC1	51315	broad.mit.edu	37	chr2	88327465	88327465	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgtactgacatgtacGgtttctatttccacctctgt	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88327465	T	T	88327465	2	4	9	1	0	0	0	0	0	0	0	1	8512	1103	39	1		1	KRCC1	2	88327465	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	311168	88327465	154871908	3099	11250											
SMYD1	150572	broad.mit.edu	37	chr2	88367253	88367253	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcccagtagctgagagcGagtagggaaggggaggtggc	21	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88367253	T	T	88367253	1	4	9	0	1	0	0	0	0	0	0	0	14935	1073	37	3		3	SMYD1	2	88367253	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	39788	88367253	154832120	3100	11251											
SMYD1	150572	broad.mit.edu	37	chr2	88390490	88390490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctaggatgttgttctgtcCatgtctgtcgactgactctt	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88390490	A	A	88390490	1	1	9	0	1	0	0	0	0	0	0	0	14935	609	21	2		2	SMYD1	2	88390490	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23237	88390490	154808883	3101	11252											
SMYD1	150572	broad.mit.edu	37	chr2	88396125	88396125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcagaattgagctccGggccctaggcaagatctcag	11	12	2	3	rs142954295		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88396125	T	T	88396125	3	4	9	1	0	0	0	0	1	0	0	0	14935	1116	39	1	732	1	SMYD1	2	88396125	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5635	88396125	154803248	3102	11253											
FABP1	2168	broad.mit.edu	37	chr2	88425776	88425776	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatcactttggacccagcGgtgatggtgaacttgaagtg	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88425776	T	T	88425776	2	4	9	1	0	0	0	0	0	0	0	1	5401	1103	39	1		1	FABP1	2	88425776	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29651	88425776	154773597	3103	11254											
THNSL2	55258	broad.mit.edu	37	chr2	88478410	88478410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattcgatcaactggtcccGggtcctggtgcagatggccc	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88478410	T	T	88478410	3	4	9	1	0	0	0	0	1	0	0	0	15986	1116	39	1	694	1	THNSL2	2	88478410	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52634	88478410	154720963	3104	11255											
C2orf51	200523	broad.mit.edu	37	chr2	88825182	88825182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcaggtgtgaaataccCgggacaggtgagtgatgtgg	17	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88825182	A	A	88825182	3	1	9	1	0	0	0	0	1	0	0	0	2195	652	23	1	22	1	C2orf51	2	88825182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	346772	88825182	154374191	3105	11256											
EIF2AK3	9451	broad.mit.edu	37	chr2	88857270	88857270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctaattgcttggcaaaGggctatgggagttgttggac	15	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88857270	T	T	88857270	3	4	9	1	0	0	0	0	1	0	0	0	5038	1000	35	2	19	2	EIF2AK3	2	88857270	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32088	88857270	154342103	3106	11257											
EIF2AK3	9451	broad.mit.edu	37	chr2	88857311	88857311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgaatgttttgttccCgatgaactcaaggagcgaga	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88857311	A	A	88857311	2	1	9	1	0	0	0	0	0	0	0	1	5038	639	23	1		1	EIF2AK3	2	88857311	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	88857311	154342062	3107	11258											
EIF2AK3	9451	broad.mit.edu	37	chr2	88885498	88885498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatattcttgttgtaatgtGggttgtcgaggaatctgact	13	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885498	T	T	88885498	3	4	9	1	0	0	0	0	1	0	0	0	5038	1348	47	2	1875	2	EIF2AK3	2	88885498	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28187	88885498	154313875	3108	11259											
RPIA	22934	broad.mit.edu	37	chr2	88999639	88999639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtatcttctggttcccCggggttgtggacctatggcc	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88999639	A	A	88999639	1	1	9	0	1	0	0	0	0	0	0	0	13664	667	23	1		1	RPIA	2	88999639	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	114141	88999639	154199734	3109	11260											
MAL	4118	broad.mit.edu	37	chr2	95715494	95715494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccacagcgggcggctcCgtggctggcagggtgtgtgt	19	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95715494	A	A	95715494	1	1	9	0	1	0	0	0	0	0	0	0	9291	667	23	1		1	MAL	2	95715494	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6715855	95715494	147483879	3110	11261											
ZNF514	84874	broad.mit.edu	37	chr2	95815548	95815548	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcattcatacggcttttctcCagtgtgacatcgctgatggc	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95815548	G	G	95815548	3	3	9	1	0	0	0	0	1	0	0	0	18086	603	21	4	524	4	ZNF514	2	95815548	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100054	95815548	147383825	3111	11262											
ZNF2	7549	broad.mit.edu	37	chr2	95842027	95842027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtggacttttgtgttccCgaaatactccattcatctcc	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95842027	A	A	95842027	1	1	9	0	1	0	0	0	0	0	0	0	17886	667	23	1		1	ZNF2	2	95842027	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26479	95842027	147357346	3112	11263											
TRIM43	129868	broad.mit.edu	37	chr2	96259845	96259845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaactacctggtagaccCtgtcaccatctgctgtgggc	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96259845	A	A	96259845	3	1	9	1	0	0	0	0	1	0	0	0	16642	681	24	2	76	2	TRIM43	2	96259845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	417818	96259845	146939528	3113	11264											
ASTL	431705	broad.mit.edu	37	chr2	96799165	96799165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggccccggcacttaccCatacatggggatgatggaaa	11	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96799165	A	A	96799165	3	1	9	1	0	0	0	0	1	0	0	0	1067	608	21	2	860	2	ASTL	2	96799165	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	539320	96799165	146400208	3114	11265											
STARD7	56910	broad.mit.edu	37	chr2	96858200	96858200	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggcacactcggatgctcCacagcactggtaaggaggaa	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96858200	A	A	96858200	2	1	9	1	0	0	0	0	0	0	0	1	15380	581	21	2		2	STARD7	2	96858200	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59035	96858200	146341173	3115	11266											
TMEM127	55654	broad.mit.edu	37	chr2	96920572	96920572	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggctcacggcttaccCgttaggatatgggcgaaggc	15	10	1	0	rs143522428	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96920572	A	A	96920572	2	1	9	1	0	0	0	0	0	0	0	1	16163	666	23	1		1	TMEM127	2	96920572	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62372	96920572	146278801	3116	11267											
SNRNP200	23020	broad.mit.edu	37	chr2	96964042	96964042	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcggatcagatcctccttctCggtttcatgaagctggtaga	10	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96964042	A	A	96964042	4	1	9	1	0	0	0	0	0	1	0	0	14966	893	31	3	5459	3	SNRNP200	2	96964042	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43470	96964042	146235331	3117	11268											
SNRNP200	23020	broad.mit.edu	37	chr2	96969005	96969005	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatctcatcaatgccctcCgacagcagagtataaccctt	5	15	2	1	rs115907254	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96969005	A	A	96969005	2	1	9	1	0	0	0	0	0	0	0	1	14966	639	23	1		1	SNRNP200	2	96969005	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4963	96969005	146230368	3118	11269											
SNRNP200	23020	broad.mit.edu	37	chr2	96969023	96969023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgacagcagagtataaccCttcatcttgttgatgtcatg	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96969023	A	A	96969023	3	1	9	1	0	0	0	0	1	0	0	0	14966	680	24	2	6327	2	SNRNP200	2	96969023	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	96969023	146230350	3119	11270											
NCAPH	23397	broad.mit.edu	37	chr2	97031611	97031611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaagagctgtttcttgccCaggctgctgacagtgatgat	12	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97031611	A	A	97031611	1	1	9	0	1	0	0	0	0	0	0	0	10304	609	21	2		2	NCAPH	2	97031611	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62588	97031611	146167762	3120	11271											
NCAPH	23397	broad.mit.edu	37	chr2	97035278	97035278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggagtattagagtattcCctgtttatgtcaactcattt	8	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97035278	A	A	97035278	1	1	9	0	1	0	0	0	0	0	0	0	10304	638	22	2		2	NCAPH	2	97035278	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3667	97035278	146164095	3121	11272											
CNNM4	26504	broad.mit.edu	37	chr2	97427532	97427532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttctagacaacctcatcGggtccggcctcatggcggtg	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97427532	T	T	97427532	3	4	9	1	0	0	0	0	1	0	0	0	3647	1116	39	1	798	1	CNNM4	2	97427532	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	392254	97427532	145771841	3122	11273											
CNNM4	26504	broad.mit.edu	37	chr2	97427930	97427930	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacttcaacaccatgtcGgagataatggaaagcggcta	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97427930	T	T	97427930	2	4	9	1	0	0	0	0	0	0	0	1	3647	1103	39	1		1	CNNM4	2	97427930	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	398	97427930	145771443	3123	11274											
CNNM4	26504	broad.mit.edu	37	chr2	97427962	97427962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcggctatactcgcatccCggtgttcgaagacgagcagt	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97427962	A	A	97427962	3	1	9	1	0	0	0	0	1	0	0	0	3647	652	23	1	1228	1	CNNM4	2	97427962	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	97427962	145771411	3124	11275											
CNNM4	26504	broad.mit.edu	37	chr2	97428032	97428032	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttggcctttgtggacccCgatgactgcacccccctcaa	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97428032	A	A	97428032	2	1	9	1	0	0	0	0	0	0	0	1	3647	639	23	1		1	CNNM4	2	97428032	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	97428032	145771341	3125	11276											
CNNM4	26504	broad.mit.edu	37	chr2	97463346	97463346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaaagtgaaaatctcccCgcagctcctcctggccgctc	8	17	2	1	rs34834618		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97463346	A	A	97463346	3	1	9	1	0	0	0	0	1	0	0	0	3647	652	23	1	1653	1	CNNM4	2	97463346	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35314	97463346	145736027	3126	11277											
CNNM3	26505	broad.mit.edu	37	chr2	97494520	97494520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctggtctgagactgccCggaacaaggccttccactca	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97494520	A	A	97494520	1	1	9	0	1	0	0	0	0	0	0	0	3646	667	23	1		1	CNNM3	2	97494520	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31174	97494520	145704853	3127	11278											
SEMA4C	54910	broad.mit.edu	37	chr2	97526381	97526381	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatactgatgactcctcGgggttggagtcgggcagtgg	15	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97526381	T	T	97526381	2	4	9	1	0	0	0	0	0	0	0	1	14146	1103	39	1		1	SEMA4C	2	97526381	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31861	97526381	145672992	3128	11279											
SEMA4C	54910	broad.mit.edu	37	chr2	97526393	97526393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcctcggggttggagtcGggcagtggctggcgttgctg	19	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97526393	T	T	97526393	2	4	9	1	0	0	0	0	0	0	0	1	14146	1103	39	1		1	SEMA4C	2	97526393	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	97526393	145672980	3129	11280											
ACTR1B	10120	broad.mit.edu	37	chr2	98275432	98275432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcccggttcttactcGggttgagcggggcctccgtg	13	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98275432	T	T	98275432	3	4	9	1	0	0	0	0	1	0	0	0	210	1116	39	1	808	1	ACTR1B	2	98275432	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	749039	98275432	144923941	3130	11281											
TMEM131	23505	broad.mit.edu	37	chr2	98375500	98375500	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcacgatcgagataatccGagtttgctgaaaacttctgg	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98375500	T	T	98375500	2	4	9	1	0	0	0	0	0	0	0	1	16167	1045	37	3		3	TMEM131	2	98375500	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	100068	98375500	144823873	3131	11282											
VWA3B	200403	broad.mit.edu	37	chr2	98744680	98744680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgtgagggagataaacCgttggcaccactgttttgca	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98744680	A	A	98744680	1	1	9	0	1	0	0	0	0	0	0	0	17368	667	23	1		1	VWA3B	2	98744680	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	369180	98744680	144454693	3132	11283											
VWA3B	200403	broad.mit.edu	37	chr2	98810888	98810888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaagcagttgcttggcGggaacaacttgctgaagtca	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98810888	T	T	98810888	3	4	9	1	0	0	0	0	1	0	0	0	17368	1116	39	1	1712	1	VWA3B	2	98810888	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66208	98810888	144388485	3133	11284											
CNGA3	1261	broad.mit.edu	37	chr2	99013247	99013247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgatggggtcacccagttCgtggtcctcagcgatggcag	15	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99013247	A	A	99013247	3	1	9	1	0	0	0	0	1	0	0	0	3630	883	31	3	1640	3	CNGA3	2	99013247	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	202359	99013247	144186126	3134	11285											
INPP4A	3631	broad.mit.edu	37	chr2	99182490	99182490	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctctctccacctttctccAgcgacgggtttaacgtgcgg	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99182490	C	C	99182490	5	2	9	1	0	0	0	0	0	0	1	0	7822	202	7	5	2371	5	INPP4A	2	99182490	Splice_Site	SNP	A	TCGA-05-4396-01A-21D-1855-08	169243	99182490	144016883	3135	11286											
INPP4A	3631	broad.mit.edu	37	chr2	99204041	99204041	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaagcattacaggcctccCgaagggacttacggaaaagt	10	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99204041	A	A	99204041	2	1	9	1	0	0	0	0	0	0	0	1	7822	639	23	1		1	INPP4A	2	99204041	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21551	99204041	143995332	3136	11287											
UNC50	25972	broad.mit.edu	37	chr2	99232809	99232809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagctttttttcatcaacCgtaagtagcagttaattaga	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99232809	A	A	99232809	3	1	9	1	0	0	0	0	1	0	0	0	17116	666	23	1	551	1	UNC50	2	99232809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28768	99232809	143966564	3137	11288											
C2orf55	343990	broad.mit.edu	37	chr2	99413825	99413825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagcacctggcctctctcGggcaccttggcttgctttcc	9	16	1	0	rs79749347	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99413825	T	T	99413825	2	4	9	1	0	0	0	0	0	0	0	1	2198	1103	39	1		1	C2orf55	2	99413825	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	181016	99413825	143785548	3138	11289											
TSGA10	80705	broad.mit.edu	37	chr2	99681512	99681512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatctgcctctgattgacGggctttattttcccagtttt	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99681512	T	T	99681512	3	4	9	1	0	0	0	0	1	0	0	0	16742	1116	39	1	826	1	TSGA10	2	99681512	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	267687	99681512	143517861	3139	11290											
EIF5B	9669	broad.mit.edu	37	chr2	100006721	100006721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgagaataaagatcccCgcacttttgtgtctttggta	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100006721	A	A	100006721	3	1	9	1	0	0	0	0	1	0	0	0	5086	652	23	1	2505	1	EIF5B	2	100006721	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	325209	100006721	143192652	3140	11291											
EIF5B	9669	broad.mit.edu	37	chr2	100013288	100013288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttttaattctcgagatcCgatagtgatgggggtgacgg	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100013288	A	A	100013288	3	1	9	1	0	0	0	0	1	0	0	0	5086	652	23	1	3406	1	EIF5B	2	100013288	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6567	100013288	143186085	3141	11292											
AFF3	3899	broad.mit.edu	37	chr2	100170776	100170776	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtgtgcgctcacctcGgttttccttggccaggttgt	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100170776	T	T	100170776	2	4	9	1	0	0	0	0	0	0	0	1	358	1124	39	1		1	AFF3	2	100170776	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	157488	100170776	143028597	3142	11293											
AFF3	3899	broad.mit.edu	37	chr2	100210181	100210181	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccccgcgtgcggcgcttctCgcaggtcacggaggagcgca	15	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100210181	A	A	100210181	4	1	9	1	0	0	0	0	0	1	0	0	358	893	31	3	1782	3	AFF3	2	100210181	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39405	100210181	142989192	3143	11294											
LONRF2	164832	broad.mit.edu	37	chr2	100915332	100915332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgcacaaaggacagtgtGgggcgtggtcaaggcagcgc	16	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100915332	T	T	100915332	3	4	9	1	0	0	0	0	1	0	0	0	8982	1348	47	2	846	2	LONRF2	2	100915332	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	705151	100915332	142284041	3144	11295											
CHST10	9486	broad.mit.edu	37	chr2	101010080	101010080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcttcaaactggatccccCgggtctctgtccggttcctc	8	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101010080	A	A	101010080	3	1	9	1	0	0	0	0	1	0	0	0	3429	652	23	1	376	1	CHST10	2	101010080	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94748	101010080	142189293	3145	11296											
NPAS2	4862	broad.mit.edu	37	chr2	101584858	101584858	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagtggaactccaagccCgagttcatcgtgtgcacaca	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101584858	A	A	101584858	2	1	9	1	0	0	0	0	0	0	0	1	10658	639	23	1		1	NPAS2	2	101584858	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	574778	101584858	141614515	3146	11297											
NPAS2	4862	broad.mit.edu	37	chr2	101591324	101591324	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactcgacgtgggtgcctcGggccttaataccagtcattc	10	13	1	0	rs144494121		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101591324	T	T	101591324	2	4	9	1	0	0	0	0	0	0	0	1	10658	1103	39	1		1	NPAS2	2	101591324	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6466	101591324	141608049	3147	11298											
NPAS2	4862	broad.mit.edu	37	chr2	101591863	101591863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcatgggtcccctcttcGgatgagtacatgctaagtac	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101591863	T	T	101591863	1	4	9	0	1	0	0	0	0	0	0	0	10658	1131	39	1		1	NPAS2	2	101591863	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	539	101591863	141607510	3148	11299											
NPAS2	4862	broad.mit.edu	37	chr2	101592064	101592064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaactcctccacgggtgtAcgctacaatgtggtgggggc	13	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101592064	T	T	101592064	1	4	9	0	1	0	0	0	0	0	0	0	10658	406	14	5		5	NPAS2	2	101592064	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	201	101592064	141607309	3149	11300											
RPL31	6160	broad.mit.edu	37	chr2	101620806	101620806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccagcttcacttaaccCtgcaagagcccatatcagtt	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101620806	A	A	101620806	1	1	9	0	1	0	0	0	0	0	0	0	13692	696	24	2		2	RPL31	2	101620806	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28742	101620806	141578567	3150	11301											
TBC1D8	11138	broad.mit.edu	37	chr2	101650075	101650075	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcaaagcagcaattccCgtttcgttctggaaggcggg	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101650075	A	A	101650075	2	1	9	1	0	0	0	0	0	0	0	1	15747	639	23	1		1	TBC1D8	2	101650075	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29269	101650075	141549298	3151	11302											
RNF149	284996	broad.mit.edu	37	chr2	101898361	101898361	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcatctcctttaaagctGggatcacactgtggctcaga	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101898361	T	T	101898361	2	4	9	1	0	0	0	0	0	0	0	1	13561	1335	47	2		2	RNF149	2	101898361	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	248286	101898361	141301012	3152	11303											
MAP4K4	9448	broad.mit.edu	37	chr2	102315028	102315028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgccttctttgtttccCgtggcatgtggaaacttctt	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102315028	A	A	102315028	1	1	9	0	1	0	0	0	0	0	0	0	9354	667	23	1		1	MAP4K4	2	102315028	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	416667	102315028	140884345	3153	11304											
MAP4K4	9448	broad.mit.edu	37	chr2	102484490	102484490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaactgcgctgtactgaaGggcgaagtggtaagcgccat	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102484490	T	T	102484490	1	4	9	0	1	0	0	0	0	0	0	0	9354	1014	35	2		2	MAP4K4	2	102484490	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	169462	102484490	140714883	3154	11305											
MAP4K4	9448	broad.mit.edu	37	chr2	102504457	102504457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagccgtgtctgagactcCatttatttatcatgctgatt	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102504457	A	A	102504457	1	1	9	0	1	0	0	0	0	0	0	0	9354	609	21	2		2	MAP4K4	2	102504457	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19967	102504457	140694916	3155	11306											
IL1R2	7850	broad.mit.edu	37	chr2	102626066	102626066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgggaggcattacaagcGggagttcaggctggaagggg	19	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102626066	T	T	102626066	3	4	9	1	0	0	0	0	1	0	0	0	7729	1116	39	1	116	1	IL1R2	2	102626066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121609	102626066	140573307	3156	11307											
IL1R2	7850	broad.mit.edu	37	chr2	102626146	102626146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggcctctgtcagccccCgcatcaacctgacatggcat	10	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102626146	A	A	102626146	3	1	9	1	0	0	0	0	1	0	0	0	7729	652	23	1	196	1	IL1R2	2	102626146	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	102626146	140573227	3157	11308											
IL1RL2	8808	broad.mit.edu	37	chr2	102808543	102808543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgtcatctgcacttccCgaagagttgtgttttgggtc	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102808543	A	A	102808543	3	1	9	1	0	0	0	0	1	0	0	0	7734	652	23	1	462	1	IL1RL2	2	102808543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	182397	102808543	140390830	3158	11309											
IL1RL2	8808	broad.mit.edu	37	chr2	102851421	102851421	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgattgtcattgtggtcccCgaatcgctgggctttggcct	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102851421	A	A	102851421	2	1	9	1	0	0	0	0	0	0	0	1	7734	639	23	1		1	IL1RL2	2	102851421	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42878	102851421	140347952	3159	11310											
IL1RL1	9173	broad.mit.edu	37	chr2	102967993	102967993	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatctatttcttgtatgacTagatgtagtcactgcagtgg	10	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102967993	G	G	102967993	1	3	9	0	1	0	0	0	0	0	0	0	7733	1537	53	5		5	IL1RL1	2	102967993	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	116572	102967993	140231380	3160	11311											
SLC9A4	389015	broad.mit.edu	37	chr2	103128757	103128757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctgagggtttcactcCctgacaaacttctaaaggtt	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103128757	A	A	103128757	1	1	9	0	1	0	0	0	0	0	0	0	14830	638	22	2		2	SLC9A4	2	103128757	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	160764	103128757	140070616	3161	11312											
SLC9A4	389015	broad.mit.edu	37	chr2	103142757	103142757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacctctcctacccctacGggaatcctcagtctgcagga	8	16	3	0	rs150367489	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103142757	T	T	103142757	3	4	9	1	0	0	0	0	1	0	0	0	14830	1116	39	1	2032	1	SLC9A4	2	103142757	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14000	103142757	140056616	3162	11313											
SLC9A2	6549	broad.mit.edu	37	chr2	103274255	103274255	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgattttctggtatgctgtGgtagggacactttggaattc	12	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103274255	T	T	103274255	2	4	9	1	0	0	0	0	0	0	0	1	14826	1335	47	2		2	SLC9A2	2	103274255	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131498	103274255	139925118	3163	11314											
SLC9A2	6549	broad.mit.edu	37	chr2	103274325	103274325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccagatcgaagcattcGgcctcagcgacatcactttg	9	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103274325	T	T	103274325	3	4	9	1	0	0	0	0	1	0	0	0	14826	1116	39	1	598	1	SLC9A2	2	103274325	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	103274325	139925048	3164	11315											
SLC9A2	6549	broad.mit.edu	37	chr2	103274532	103274532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacaggtgggggctgccCagccacctgcagtggctctc	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103274532	A	A	103274532	1	1	9	0	1	0	0	0	0	0	0	0	14826	609	21	2		2	SLC9A2	2	103274532	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	207	103274532	139924841	3165	11316											
SLC9A2	6549	broad.mit.edu	37	chr2	103300756	103300756	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaaaaattgtttattacGgctgccattgttgtcatatt	8	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103300756	T	T	103300756	2	4	9	1	0	0	0	0	0	0	0	1	14826	1103	39	1		1	SLC9A2	2	103300756	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26224	103300756	139898617	3166	11317											
MRPS9	64965	broad.mit.edu	37	chr2	105710081	105710081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattaccagctttacttccCgatcacacaggacaggttcg	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105710081	A	A	105710081	3	1	9	1	0	0	0	0	1	0	0	0	9943	652	23	1	948	1	MRPS9	2	105710081	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2409325	105710081	137489292	3167	11318											
GPR45	11250	broad.mit.edu	37	chr2	105859167	105859167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgctggctgccccactcCgtctacagcctcctgtctgt	8	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105859167	A	A	105859167	2	1	9	1	0	0	0	0	0	0	0	1	6761	639	23	1		1	GPR45	2	105859167	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	149086	105859167	137340206	3168	11319											
NCK2	8440	broad.mit.edu	37	chr2	106498006	106498006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcgacggttggtggcGgggcagctacaacgggcaga	19	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106498006	T	T	106498006	3	4	9	1	0	0	0	0	1	0	0	0	10315	1116	39	1	455	1	NCK2	2	106498006	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	638839	106498006	136701367	3169	11320											
C2orf40	84417	broad.mit.edu	37	chr2	106690351	106690351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgatttcagcacctgttcCaactaagactaaagtggccg	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106690351	A	A	106690351	3	1	9	1	0	0	0	0	1	0	0	0	2187	594	21	2	147	2	C2orf40	2	106690351	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	192345	106690351	136509022	3170	11321											
RGPD3	653489	broad.mit.edu	37	chr2	107032349	107032349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattggttgcctctatttccCgaagcaggccgtttaagtga	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107032349	A	A	107032349	3	1	9	1	0	0	0	0	1	0	0	0	13395	652	23	1	267	1	RGPD3	2	107032349	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	341998	107032349	136167024	3171	11322											
RGPD3	653489	broad.mit.edu	37	chr2	107040593	107040593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagattttttctcacaGggctacttgccaatggagaa	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107040593	T	T	107040593	3	4	9	1	0	0	0	0	1	0	0	0	13395	1000	35	2	1462	2	RGPD3	2	107040593	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8244	107040593	136158780	3172	11323											
RGPD3	653489	broad.mit.edu	37	chr2	107041010	107041010	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctagtttggcatcaccatcaGagaaatcactggctgaccac	8	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107041010	T	T	107041010	3	4	9	1	0	0	0	0	1	0	0	0	13395	942	33	3	1879	3	RGPD3	2	107041010	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	417	107041010	136158363	3173	11324											
RGPD3	653489	broad.mit.edu	37	chr2	107041639	107041639	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttgatttcctggttcCgaaatgccaaatttaaatcc	5	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107041639	A	A	107041639	2	1	9	1	0	0	0	0	0	0	0	1	13395	639	23	1		1	RGPD3	2	107041639	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	629	107041639	136157734	3174	11325											
RGPD3	653489	broad.mit.edu	37	chr2	107073455	107073455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaattgcaggacttcctGggaaaagttttgctgctctt	9	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107073455	T	T	107073455	3	4	9	1	0	0	0	0	1	0	0	0	13395	1348	47	2	4979	2	RGPD3	2	107073455	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31816	107073455	136125918	3175	11326											
ST6GAL2	84620	broad.mit.edu	37	chr2	107459975	107459975	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgtgggcctggctccccGggggaagggaatcccaatgt	15	13	0	0	rs142520495		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107459975	T	T	107459975	2	4	9	1	0	0	0	0	0	0	0	1	15340	1103	39	1		1	ST6GAL2	2	107459975	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	386520	107459975	135739398	3176	11327											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460057	107460057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtagtcgtcatcctccGggtagaaagcactttgagat	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107460057	T	T	107460057	3	4	9	1	0	0	0	0	1	0	0	0	15340	1116	39	1	1319	1	ST6GAL2	2	107460057	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82	107460057	135739316	3177	11328											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460085	107460085	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcactttgagattttctccCcacctgggatgaaaaaaact	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107460085	G	G	107460085	3	3	9	1	0	0	0	0	1	0	0	0	15340	623	22	4	1347	4	ST6GAL2	2	107460085	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	107460085	135739288	3178	11329											
RGPD4	285190	broad.mit.edu	37	chr2	108455365	108455365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggaagagcaaaatactGggtggaaagagcagcaaaac	13	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108455365	T	T	108455365	3	4	9	1	0	0	0	0	1	0	0	0	13396	1357	47	2	364	2	RGPD4	2	108455365	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	995280	108455365	134744008	3179	11330											
RGPD4	285190	broad.mit.edu	37	chr2	108479413	108479413	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttttagtattctccCaaaacaccacctcgatgggc	5	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108479413	A	A	108479413	2	1	9	1	0	0	0	0	0	0	0	1	13396	581	21	2		2	RGPD4	2	108479413	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24048	108479413	134719960	3180	11331											
RGPD4	285190	broad.mit.edu	37	chr2	108487244	108487244	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttaaatttggcatttcGgaaccaggaaatcaagaaaa	9	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108487244	T	T	108487244	2	4	9	1	0	0	0	0	0	0	0	1	13396	1103	39	1		1	RGPD4	2	108487244	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7831	108487244	134712129	3181	11332											
RGPD4	285190	broad.mit.edu	37	chr2	108487485	108487485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattattctcatcacaatgcGgtaaaatggccaataaagca	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108487485	T	T	108487485	3	4	9	1	0	0	0	0	1	0	0	0	13396	1116	39	1	3103	1	RGPD4	2	108487485	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	241	108487485	134711888	3182	11333											
RGPD4	285190	broad.mit.edu	37	chr2	108487569	108487569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggacagcgatgacatcCattttgaaccagtagttcaa	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108487569	A	A	108487569	3	1	9	1	0	0	0	0	1	0	0	0	13396	594	21	2	3187	2	RGPD4	2	108487569	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	108487569	134711804	3183	11334											
RGPD4	285190	broad.mit.edu	37	chr2	108487827	108487827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaatgaacctgaagcccCtgtctggatcagatagagca	9	11	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108487827	A	A	108487827	3	1	9	1	0	0	0	0	1	0	0	0	13396	680	24	2	3445	2	RGPD4	2	108487827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	258	108487827	134711546	3184	11335											
RGPD4	285190	broad.mit.edu	37	chr2	108487998	108487998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acataccacttcaaactcccCataaacttgtagatactggc	4	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108487998	A	A	108487998	3	1	9	1	0	0	0	0	1	0	0	0	13396	594	21	2	3616	2	RGPD4	2	108487998	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	171	108487998	134711375	3185	11336											
RGPD4	285190	broad.mit.edu	37	chr2	108488698	108488698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaatcacacaataactcCagacatgagtttgcaaaata	5	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108488698	A	A	108488698	3	1	9	1	0	0	0	0	1	0	0	0	13396	594	21	2	4316	2	RGPD4	2	108488698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	700	108488698	134710675	3186	11337											
RGPD4	285190	broad.mit.edu	37	chr2	108496520	108496520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttaaacggcctgcttcGggaagcagaggcaaccagtg	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108496520	T	T	108496520	3	4	9	1	0	0	0	0	1	0	0	0	13396	1116	39	1	5103	1	RGPD4	2	108496520	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7822	108496520	134702853	3187	11338											
SULT1C4	27233	broad.mit.edu	37	chr2	108998866	108998866	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaagctcatgcaatgccCtcaccacggatcctgaaaac	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108998866	A	A	108998866	2	1	9	1	0	0	0	0	0	0	0	1	15497	668	24	2		2	SULT1C4	2	108998866	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	502346	108998866	134200507	3188	11339											
SULT1C4	27233	broad.mit.edu	37	chr2	108998896	108998896	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgaaaacacatcttccCtttcacttgctgccaccatc	3	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108998896	A	A	108998896	2	1	9	1	0	0	0	0	0	0	0	1	15497	668	24	2		2	SULT1C4	2	108998896	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	108998896	134200477	3189	11340											
GCC2	9648	broad.mit.edu	37	chr2	109111928	109111928	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagctgcttaactctccCgaaactaaacttggtatgtt	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109111928	A	A	109111928	2	1	9	1	0	0	0	0	0	0	0	1	6348	639	23	1		1	GCC2	2	109111928	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113032	109111928	134087445	3190	11341											
GCC2	9648	broad.mit.edu	37	chr2	109113522	109113522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttaaacggcctgcttcGggaaacagaagcaaccaatg	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109113522	T	T	109113522	3	4	9	1	0	0	0	0	1	0	0	0	6348	1116	39	1	4821	1	GCC2	2	109113522	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1594	109113522	134085851	3191	11342											
LIMS1	3987	broad.mit.edu	37	chr2	109297257	109297257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttgtccagtgtgaatcCtaagactgaaaactttgggg	12	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109297257	A	A	109297257	1	1	9	0	1	0	0	0	0	0	0	0	8875	696	24	2		2	LIMS1	2	109297257	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	183735	109297257	133902116	3192	11343											
RANBP2	5903	broad.mit.edu	37	chr2	109357062	109357062	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttctctgcttttgaagatGggtcagcatagtagtaatgt	12	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109357062	T	T	109357062	3	4	9	1	0	0	0	0	1	0	0	0	13136	1348	47	2	926	2	RANBP2	2	109357062	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59805	109357062	133842311	3193	11344											
RANBP2	5903	broad.mit.edu	37	chr2	109365617	109365617	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcagaggaaatggtctcCgtcttaattcttataaattg	8	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109365617	A	A	109365617	1	1	9	0	1	0	0	0	0	0	0	0	13136	667	23	1		1	RANBP2	2	109365617	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8555	109365617	133833756	3194	11345											
RANBP2	5903	broad.mit.edu	37	chr2	109368450	109368450	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaatgccttcagaaaacGgtgagttttaaagtataagc	10	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109368450	T	T	109368450	2	4	9	1	0	0	0	0	0	0	0	1	13136	1130	39	1		1	RANBP2	2	109368450	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2833	109368450	133830923	3195	11346											
RANBP2	5903	broad.mit.edu	37	chr2	109374932	109374932	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccctcatcgttggcccacaGagaattatggaccagactca	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109374932	T	T	109374932	4	4	9	1	0	0	0	0	0	1	0	0	13136	943	33	3	2600	3	RANBP2	2	109374932	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6482	109374932	133824441	3196	11347											
RANBP2	5903	broad.mit.edu	37	chr2	109382579	109382579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagcaaggattcaaatttGggcatgtggatcaagaaaat	11	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109382579	T	T	109382579	3	4	9	1	0	0	0	0	1	0	0	0	13136	1348	47	2	5662	2	RANBP2	2	109382579	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7647	109382579	133816794	3197	11348											
RANBP2	5903	broad.mit.edu	37	chr2	109382945	109382945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattattctcatcacaatacGgtaaaatggccaataaagca	5	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109382945	T	T	109382945	3	4	9	1	0	0	0	0	1	0	0	0	13136	1116	39	1	6028	1	RANBP2	2	109382945	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	366	109382945	133816428	3198	11349											
RANBP2	5903	broad.mit.edu	37	chr2	109383779	109383779	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatcttttccgttttggtGagtcaacaacaggatttaac	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109383779	T	T	109383779	4	4	9	1	0	0	0	0	0	1	0	0	13136	1291	45	3	6862	3	RANBP2	2	109383779	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	834	109383779	133815594	3199	11350											
RANBP2	5903	broad.mit.edu	37	chr2	109384601	109384601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcaaaaccatttgcattcGgcaacagttcagccactggg	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109384601	T	T	109384601	3	4	9	1	0	0	0	0	1	0	0	0	13136	1116	39	1	7684	1	RANBP2	2	109384601	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	822	109384601	133814772	3200	11351											
RANBP2	5903	broad.mit.edu	37	chr2	109384801	109384801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttgcttcctttccaacGgaagaatcttcaatcaacta	4	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109384801	T	T	109384801	2	4	9	1	0	0	0	0	0	0	0	1	13136	1103	39	1		1	RANBP2	2	109384801	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	200	109384801	133814572	3201	11352											
RANBP2	5903	broad.mit.edu	37	chr2	109388230	109388230	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatatgaactaactccaacCgctgagcagaaagcccttgc	8	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109388230	A	A	109388230	2	1	9	1	0	0	0	0	0	0	0	1	13136	639	23	1		1	RANBP2	2	109388230	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3429	109388230	133811143	3202	11353											
RANBP2	5903	broad.mit.edu	37	chr2	109389018	109389018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagaaaaatgtagaccCttggaagaaaatacagcagg	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109389018	A	A	109389018	2	1	9	1	0	0	0	0	0	0	0	1	13136	668	24	2		2	RANBP2	2	109389018	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	788	109389018	133810355	3203	11354											
CCDC138	165055	broad.mit.edu	37	chr2	109408220	109408220	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgattatagagttagtacctCgaaaataaccaagcagtctt	7	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109408220	A	A	109408220	4	1	9	1	0	0	0	0	0	1	0	0	2798	893	31	3	370	3	CCDC138	2	109408220	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19202	109408220	133791153	3204	11355											
CCDC138	165055	broad.mit.edu	37	chr2	109421374	109421374	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaagttgaacacttaacCgaagttcttaaggaaaagaa	9	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109421374	A	A	109421374	2	1	9	1	0	0	0	0	0	0	0	1	2798	639	23	1		1	CCDC138	2	109421374	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13154	109421374	133777999	3205	11356											
CCDC138	165055	broad.mit.edu	37	chr2	109432529	109432529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaactcaaatttgcttccCagagaaatgatattcaggag	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109432529	A	A	109432529	3	1	9	1	0	0	0	0	1	0	0	0	2798	595	21	2	1212	2	CCDC138	2	109432529	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11155	109432529	133766844	3206	11357											
SEPT10	151011	broad.mit.edu	37	chr2	110310617	110310617	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatcctccaaattaataGgacatctaaaaaataaatgc	3	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110310617	T	T	110310617	1	4	9	0	1	0	0	0	0	0	0	0	14173	1015	35	2		2	SEPT10	2	110310617	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	878088	110310617	132888756	3207	11358											
SEPT10	151011	broad.mit.edu	37	chr2	110323367	110323367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaccccaagggtactggcGagctttgaccatcttgtttc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110323367	T	T	110323367	3	4	9	1	0	0	0	0	1	0	0	0	14173	1058	37	3	552	3	SEPT10	2	110323367	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12750	110323367	132876006	3208	11359											
SEPT10	151011	broad.mit.edu	37	chr2	110332155	110332155	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgattcctttcctcaaccCaccttgctgtcaaggttctt	6	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110332155	A	A	110332155	1	1	9	0	1	0	0	0	0	0	0	0	14173	609	21	2		2	SEPT10	2	110332155	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8788	110332155	132867218	3209	11360											
NPHP1	4867	broad.mit.edu	37	chr2	110883251	110883251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctttcttttccagccCacgaactctaaagagcaaac	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110883251	A	A	110883251	3	1	9	1	0	0	0	0	1	0	0	0	10674	595	21	2	317	2	NPHP1	2	110883251	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	551096	110883251	132316122	3210	11361											
NPHP1	4867	broad.mit.edu	37	chr2	110917824	110917824	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgaaatacgacttggtctCgacctaatctgaaagaaaaa	7	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110917824	A	A	110917824	2	1	9	1	0	0	0	0	0	0	0	1	10674	871	31	3		3	NPHP1	2	110917824	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34573	110917824	132281549	3211	11362											
NPHP1	4867	broad.mit.edu	37	chr2	110922262	110922262	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacaagacagaagatgccCgcctctgaaatcgctttctg	8	11	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110922262	A	A	110922262	2	1	9	1	0	0	0	0	0	0	0	1	10674	639	23	1		1	NPHP1	2	110922262	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4438	110922262	132277111	3212	11363											
NPHP1	4867	broad.mit.edu	37	chr2	110942422	110942422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggtccttcccaattccGggcccctgagctgctcttca	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110942422	T	T	110942422	1	4	9	0	1	0	0	0	0	0	0	0	10674	1131	39	1		1	NPHP1	2	110942422	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20160	110942422	132256951	3213	11364											
BUB1	699	broad.mit.edu	37	chr2	111399278	111399278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccattctggaataagtGggcagaatagaacttcataa	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111399278	T	T	111399278	3	4	9	1	0	0	0	0	1	0	0	0	1580	1348	47	2	711	2	BUB1	2	111399278	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	456856	111399278	131800095	3214	11365											
BUB1	699	broad.mit.edu	37	chr2	111419312	111419312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaggaggtgcctctcttGggttcttttccatgttcact	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111419312	T	T	111419312	3	4	9	1	0	0	0	0	1	0	0	0	1580	1348	47	2	2257	2	BUB1	2	111419312	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20034	111419312	131780061	3215	11366											
BUB1	699	broad.mit.edu	37	chr2	111428055	111428055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatactagtacaaatcCaagactaaatggacaacaac	5	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111428055	A	A	111428055	1	1	9	0	1	0	0	0	0	0	0	0	1580	609	21	2		2	BUB1	2	111428055	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8743	111428055	131771318	3216	11367											
ACOXL	55289	broad.mit.edu	37	chr2	111556618	111556618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttcatcgttcctgtccGggatgaaaacggaagcttgt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111556618	T	T	111556618	3	4	9	1	0	0	0	0	1	0	0	0	161	1116	39	1	510	1	ACOXL	2	111556618	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	128563	111556618	131642755	3217	11368											
ACOXL	55289	broad.mit.edu	37	chr2	111850482	111850482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagctggtgtttcaggagcGggcctggtatttagaacata	13	7	1	1	rs147525326		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111850482	T	T	111850482	3	4	9	1	0	0	0	0	1	0	0	0	161	1116	39	1	1543	1	ACOXL	2	111850482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	293864	111850482	131348891	3218	11369											
BCL2L11	10018	broad.mit.edu	37	chr2	111921785	111921785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgttacgttacattgtcCgcctggtgtggagaatgcat	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111921785	A	A	111921785	3	1	9	1	0	0	0	0	1	0	0	0	1374	652	23	1	713	1	BCL2L11	2	111921785	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71303	111921785	131277588	3219	11370											
MERTK	10461	broad.mit.edu	37	chr2	112760679	112760679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttttcagtacatagcttGggagtcagtgaggaactaca	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112760679	T	T	112760679	3	4	9	1	0	0	0	0	1	0	0	0	9572	1339	47	2	1747	2	MERTK	2	112760679	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	838894	112760679	130438694	3220	11371											
TMEM87B	84910	broad.mit.edu	37	chr2	112821759	112821759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagtcattccattgttctGggcctgtgaagtttaccata	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112821759	T	T	112821759	3	4	9	1	0	0	0	0	1	0	0	0	16334	1348	47	2	257	2	TMEM87B	2	112821759	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61080	112821759	130377614	3221	11372											
FBLN7	129804	broad.mit.edu	37	chr2	112940451	112940451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacaccccgggctcttacCgttgcacctgccccggtgga	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112940451	A	A	112940451	3	1	9	1	0	0	0	0	1	0	0	0	5758	652	23	1	776	1	FBLN7	2	112940451	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118692	112940451	130258922	3222	11373											
ZC3H6	376940	broad.mit.edu	37	chr2	113060835	113060835	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctagtgatgatagttcGgactacagccttgattcaga	9	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113060835	T	T	113060835	2	4	9	1	0	0	0	0	0	0	0	1	17697	1103	39	1		1	ZC3H6	2	113060835	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	120384	113060835	130138538	3223	11374											
TTL	150465	broad.mit.edu	37	chr2	113243504	113243504	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttcctaggtcacgagccCgggctggtacagttggtgaa	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113243504	A	A	113243504	2	1	9	1	0	0	0	0	0	0	0	1	16847	639	23	1		1	TTL	2	113243504	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	182669	113243504	129955869	3224	11375											
TTL	150465	broad.mit.edu	37	chr2	113277825	113277825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctcctttgaccacccCgttctaatgagcatttcccc	4	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113277825	A	A	113277825	1	1	9	0	1	0	0	0	0	0	0	0	16847	667	23	1		1	TTL	2	113277825	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	34321	113277825	129921548	3225	11376											
POLR1B	84172	broad.mit.edu	37	chr2	113306889	113306889	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcattgaaaaagtcatcCgaatgttgattatgcctcgg	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113306889	A	A	113306889	2	1	9	1	0	0	0	0	0	0	0	1	12305	644	23	1		1	POLR1B	2	113306889	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29064	113306889	129892484	3226	11377											
POLR1B	84172	broad.mit.edu	37	chr2	113316941	113316941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcatacgctacctctccCatttccgctgcgtgcacaga	6	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113316941	A	A	113316941	3	1	9	1	0	0	0	0	1	0	0	0	12305	594	21	2	1436	2	POLR1B	2	113316941	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10052	113316941	129882432	3227	11378											
POLR1B	84172	broad.mit.edu	37	chr2	113317052	113317052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccgtgcataccccagacGgggagccctgtggcctgatg	14	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113317052	T	T	113317052	3	4	9	1	0	0	0	0	1	0	0	0	12305	1116	39	1	1547	1	POLR1B	2	113317052	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	111	113317052	129882321	3228	11379											
POLR1B	84172	broad.mit.edu	37	chr2	113332522	113332522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcactatgagagtgcctcGgaacccaactatcggagata	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113332522	T	T	113332522	3	4	9	1	0	0	0	0	1	0	0	0	12305	1116	39	1	2682	1	POLR1B	2	113332522	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15470	113332522	129866851	3229	11380											
POLR1B	84172	broad.mit.edu	37	chr2	113333023	113333023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttttggggagatggaacGggatgcgcttttagctcatg	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113333023	T	T	113333023	3	4	9	1	0	0	0	0	1	0	0	0	12305	1116	39	1	3183	1	POLR1B	2	113333023	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	501	113333023	129866350	3230	11381											
SLC20A1	6574	broad.mit.edu	37	chr2	113404990	113404990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaactattggtttctccCtcgtggcaaaggggcaggag	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113404990	A	A	113404990	3	1	9	1	0	0	0	0	1	0	0	0	14551	681	24	2	430	2	SLC20A1	2	113404990	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71967	113404990	129794383	3231	11382											
CKAP2L	150468	broad.mit.edu	37	chr2	113498329	113498329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttactctagatctgtgaaGgaaaaatcgagacttggact	10	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113498329	T	T	113498329	1	4	9	0	1	0	0	0	0	0	0	0	3474	1015	35	2		2	CKAP2L	2	113498329	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	93339	113498329	129701044	3232	11383											
CKAP2L	150468	broad.mit.edu	37	chr2	113504005	113504005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatactcactgttgcccCatttttaatggcctcttcat	5	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113504005	A	A	113504005	3	1	9	1	0	0	0	0	1	0	0	0	3474	594	21	2	503	2	CKAP2L	2	113504005	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5676	113504005	129695368	3233	11384											
CKAP2L	150468	broad.mit.edu	37	chr2	113504032	113504032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcctcttcatatagccCaataacatcaaaggtgcctt	6	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113504032	A	A	113504032	3	1	9	1	0	0	0	0	1	0	0	0	3474	594	21	2	530	2	CKAP2L	2	113504032	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	113504032	129695341	3234	11385											
IL1A	3552	broad.mit.edu	37	chr2	113535636	113535636	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagattcttagaatcacGgtaattttagcatcatcctt	6	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113535636	T	T	113535636	2	4	9	1	0	0	0	0	0	0	0	1	7720	1103	39	1		1	IL1A	2	113535636	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31604	113535636	129663737	3235	11386											
IL1A	3552	broad.mit.edu	37	chr2	113539268	113539268	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcttcttcagaaccttccCgttggttgctactaccacca	5	15	3	1	rs138861340	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113539268	G	G	113539268	3	3	9	1	0	0	0	0	1	0	0	0	7720	652	23	4	599	4	IL1A	2	113539268	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3632	113539268	129660105	3236	11387											
IL1B	3553	broad.mit.edu	37	chr2	113588884	113588884	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacctccagctgtagagtGggcttatcatctttcaacac	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113588884	T	T	113588884	2	4	9	1	0	0	0	0	0	0	0	1	7721	1335	47	2		2	IL1B	2	113588884	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	49616	113588884	129610489	3237	11388											
IL1B	3553	broad.mit.edu	37	chr2	113590214	113590214	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgccaggaggccaggcaGggaaaccaggatgtttccat	14	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113590214	T	T	113590214	1	4	9	0	1	0	0	0	0	0	0	0	7721	1015	35	2		2	IL1B	2	113590214	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1330	113590214	129609159	3238	11389											
IL1F9	56300	broad.mit.edu	37	chr2	113742449	113742449	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatctgtatggccaaccCgagcccgtgaaacccttcct	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113742449	A	A	113742449	2	1	9	1	0	0	0	0	0	0	0	1	7727	639	23	1		1	IL1F9	2	113742449	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	152235	113742449	129456924	3239	11390											
IL1F8	27177	broad.mit.edu	37	chr2	113780229	113780229	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcaaagattgtagagatGggaatcttcctccccttatt	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113780229	T	T	113780229	1	4	9	0	1	0	0	0	0	0	0	0	7726	1363	47	2		2	IL1F8	2	113780229	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	37780	113780229	129419144	3240	11391											
IL1F5	26525	broad.mit.edu	37	chr2	113820137	113820137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgagtcggctgcctacccGggctggttcctgtgcacggt	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113820137	T	T	113820137	2	4	9	1	0	0	0	0	0	0	0	1	7723	1103	39	1		1	IL1F5	2	113820137	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39908	113820137	129379236	3241	11392											
IL1RN	3557	broad.mit.edu	37	chr2	113890379	113890379	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgatggaagctgaccagccCgtcagcctcaccaatatgcc	10	15	2	1	rs2232355	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113890379	A	A	113890379	2	1	9	1	0	0	0	0	0	0	0	1	7735	639	23	1		1	IL1RN	2	113890379	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70242	113890379	129308994	3242	11393											
PSD4	23550	broad.mit.edu	37	chr2	113942556	113942556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataggcttggtcctgctcCatctgcagcaccgtgtgtgg	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113942556	A	A	113942556	3	1	9	1	0	0	0	0	1	0	0	0	12755	594	21	2	1085	2	PSD4	2	113942556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52177	113942556	129256817	3243	11394											
PAX8	7849	broad.mit.edu	37	chr2	114002024	114002024	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctattaatggagctgacactGggcacagtgtcattgtcaca	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114002024	C	C	114002024	2	2	9	1	0	0	0	0	0	0	0	1	11579	1335	47	4		4	PAX8	2	114002024	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	59468	114002024	129197349	3244	11395											
PAX8	7849	broad.mit.edu	37	chr2	114002071	114002071	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagccaggagccggtctcGgatctcccaggcaaacatgg	12	14	3	0	rs104893655		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114002071	T	T	114002071	2	4	9	1	0	0	0	0	0	0	0	1	11579	1124	39	1		1	PAX8	2	114002071	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47	114002071	129197302	3245	11396											
PAX8	7849	broad.mit.edu	37	chr2	114004297	114004297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagaagtcaagccctgcGgggaaggcggcctgcggtga	18	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114004297	T	T	114004297	1	4	9	0	1	0	0	0	0	0	0	0	11579	1131	39	1		1	PAX8	2	114004297	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2226	114004297	129195076	3246	11397											
ACTR3	10096	broad.mit.edu	37	chr2	114699823	114699823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacaagtatgatacagatGggtcaaaatggattaaacag	9	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114699823	T	T	114699823	3	4	9	1	0	0	0	0	1	0	0	0	212	1348	47	2	775	2	ACTR3	2	114699823	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	695526	114699823	128499550	3247	11398											
DDX18	8886	broad.mit.edu	37	chr2	118575204	118575204	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagtctccccagaaatcCactgtattaaccaatggaga	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118575204	A	A	118575204	2	1	9	1	0	0	0	0	0	0	0	1	4378	581	21	2		2	DDX18	2	118575204	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3875381	118575204	124624169	3248	11399											
DDX18	8886	broad.mit.edu	37	chr2	118588211	118588211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggtggtggtggatttGgctaccagaaaaccaagaaa	15	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118588211	T	T	118588211	3	4	9	1	0	0	0	0	1	0	0	0	4378	1348	47	2	1978	2	DDX18	2	118588211	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13007	118588211	124611162	3249	11400											
CCDC93	54520	broad.mit.edu	37	chr2	118705618	118705618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgccacaacaggacaacGgaggtaaaccaagagattca	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118705618	T	T	118705618	1	4	9	0	1	0	0	0	0	0	0	0	2900	1131	39	1		1	CCDC93	2	118705618	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	117407	118705618	124493755	3250	11401											
CCDC93	54520	broad.mit.edu	37	chr2	118705682	118705682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacaccaaacaacacttactCgacaatgtgctttaaattcc	4	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118705682	A	A	118705682	3	1	9	1	0	0	0	0	1	0	0	0	2900	898	31	3	712	3	CCDC93	2	118705682	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	118705682	124493691	3251	11402											
MARCO	8685	broad.mit.edu	37	chr2	119739940	119739940	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggacttccagggagcccCgggagtccaggagccacagg	15	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119739940	A	A	119739940	2	1	9	1	0	0	0	0	0	0	0	1	9403	639	23	1		1	MARCO	2	119739940	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1034258	119739940	123459433	3252	11403											
DBI	1622	broad.mit.edu	37	chr2	120125893	120125893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatacaggtatgcagagcGggggttggaagggcatctgc	16	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120125893	T	T	120125893	1	4	9	0	1	0	0	0	0	0	0	0	4284	1131	39	1		1	DBI	2	120125893	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	385953	120125893	123073480	3253	11404											
SCTR	6344	broad.mit.edu	37	chr2	120236377	120236377	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccgccaggccccatgggccGagtggttaccatttctgctg	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120236377	T	T	120236377	1	4	9	0	1	0	0	0	0	0	0	0	14056	1073	37	3		3	SCTR	2	120236377	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	110484	120236377	122962996	3254	11405											
PCDP1	200373	broad.mit.edu	37	chr2	120395943	120395943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaattcaccaaagagtccCgccacgggtccagcattcct	7	15	1	1	rs61978572		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120395943	A	A	120395943	3	1	9	1	0	0	0	0	1	0	0	0	11666	652	23	1	1271	1	PCDP1	2	120395943	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	159566	120395943	122803430	3255	11406											
PCDP1	200373	broad.mit.edu	37	chr2	120395970	120395970	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtccagcattcctgtcaccCaaaagcagtttctccatcac	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120395970	G	G	120395970	3	3	9	1	0	0	0	0	1	0	0	0	11666	595	21	4	1298	4	PCDP1	2	120395970	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	120395970	122803403	3256	11407											
PTPN4	5775	broad.mit.edu	37	chr2	120639800	120639800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtacattggcttcaatgtGggagttctttagaaatgttg	11	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120639800	T	T	120639800	1	4	9	0	1	0	0	0	0	0	0	0	12898	1363	47	2		2	PTPN4	2	120639800	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	243830	120639800	122559573	3257	11408											
EPB41L5	57669	broad.mit.edu	37	chr2	120848033	120848033	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccgccttcgaggcccCgtccaaaagagttctcatcg	8	15	2	1	rs142943979	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120848033	A	A	120848033	2	1	9	1	0	0	0	0	0	0	0	1	5199	639	23	1		1	EPB41L5	2	120848033	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	208233	120848033	122351340	3258	11409											
EPB41L5	57669	broad.mit.edu	37	chr2	120885296	120885296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgatttgctgaatagccCagacttattggaagcaacga	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120885296	A	A	120885296	3	1	9	1	0	0	0	0	1	0	0	0	5199	594	21	2	1617	2	EPB41L5	2	120885296	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37263	120885296	122314077	3259	11410											
RALB	5899	broad.mit.edu	37	chr2	121047169	121047169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttagggaacagattctcCgtgtgaaggctgaagaagat	12	7	1	5	rs1804270		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121047169	A	A	121047169	3	1	9	1	0	0	0	0	1	0	0	0	13119	652	23	1	347	1	RALB	2	121047169	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	161873	121047169	122152204	3260	11411											
GLI2	2736	broad.mit.edu	37	chr2	121726322	121726322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcccgcgggtgacgcccCgcctgagccgcaagcgggcg	16	18	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121726322	A	A	121726322	3	1	9	1	0	0	0	0	1	0	0	0	6502	652	23	1	694	1	GLI2	2	121726322	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	679153	121726322	121473051	3261	11412											
CLASP1	23332	broad.mit.edu	37	chr2	122159144	122159144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccaagtaaatctgctccCattttcttaagtaattgtgt	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122159144	A	A	122159144	3	1	9	1	0	0	0	0	1	0	0	0	3485	594	21	2	1827	2	CLASP1	2	122159144	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	432822	122159144	121040229	3262	11413											
CLASP1	23332	broad.mit.edu	37	chr2	122216418	122216418	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcctataacatacttacccGaataattaacctaacagcta	4	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122216418	T	T	122216418	2	4	9	1	0	0	0	0	0	0	0	1	3485	1057	37	3		3	CLASP1	2	122216418	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57274	122216418	120982955	3263	11414											
CLASP1	23332	broad.mit.edu	37	chr2	122285459	122285459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctccaagcattctgtccCatacgtactgcagatgacaa	7	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122285459	A	A	122285459	3	1	9	1	0	0	0	0	1	0	0	0	3485	595	21	2	4426	2	CLASP1	2	122285459	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69041	122285459	120913914	3264	11415											
MKI67IP	84365	broad.mit.edu	37	chr2	122488581	122488581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgttagtgtccgattcCgattataccgtttcactgat	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122488581	A	A	122488581	3	1	9	1	0	0	0	0	1	0	0	0	9692	652	23	1	445	1	MKI67IP	2	122488581	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	203122	122488581	120710792	3265	11416											
CNTNAP5	129684	broad.mit.edu	37	chr2	125261892	125261892	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtcactttttcctgctcCgaaccacagattgtgcccat	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125261892	A	A	125261892	2	1	9	1	0	0	0	0	0	0	0	1	3682	639	23	1		1	CNTNAP5	2	125261892	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2773311	125261892	117937481	3266	11417											
CNTNAP5	129684	broad.mit.edu	37	chr2	125285075	125285075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttctgccacccccttccCattcttactgttctaaatat	3	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125285075	A	A	125285075	1	1	9	0	1	0	0	0	0	0	0	0	3682	609	21	2		2	CNTNAP5	2	125285075	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23183	125285075	117914298	3267	11418											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521734	125521734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaataagctgtaagtgccCtcaattatgaatttaatgta	7	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521734	A	A	125521734	1	1	9	0	1	0	0	0	0	0	0	0	3682	696	24	2		2	CNTNAP5	2	125521734	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	236659	125521734	117677639	3268	11419											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671722	125671722	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcatcggcatcatgaccCggttcctctaccagcacaag	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125671722	A	A	125671722	2	1	9	1	0	0	0	0	0	0	0	1	3682	643	23	1		1	CNTNAP5	2	125671722	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	149988	125671722	117527651	3269	11420											
BIN1	274	broad.mit.edu	37	chr2	127806055	127806055	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaccacacatttttcGggaggaggtgttcttcacac	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127806055	T	T	127806055	1	4	9	0	1	0	0	0	0	0	0	0	1438	1131	39	1		1	BIN1	2	127806055	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	2134333	127806055	115393318	3270	11421											
ERCC3	2071	broad.mit.edu	37	chr2	128028923	128028923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccactttaccttttttagctCgaagcacccgccctagcctt	5	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128028923	A	A	128028923	3	1	9	1	0	0	0	0	1	0	0	0	5256	884	31	3	430	3	ERCC3	2	128028923	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	222868	128028923	115170450	3271	11422											
ERCC3	2071	broad.mit.edu	37	chr2	128036920	128036920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgattgccacatattccCggtaaaattcaggagacata	7	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128036920	A	A	128036920	3	1	9	1	0	0	0	0	1	0	0	0	5256	652	23	1	813	1	ERCC3	2	128036920	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7997	128036920	115162453	3272	11423											
ERCC3	2071	broad.mit.edu	37	chr2	128044382	128044382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttttggtggtgtggccCagcatggagtaggtgctaat	15	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128044382	A	A	128044382	2	1	9	1	0	0	0	0	0	0	0	1	5256	581	21	2		2	ERCC3	2	128044382	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7462	128044382	115154991	3273	11424											
ERCC3	2071	broad.mit.edu	37	chr2	128046272	128046272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccccgaacgtgcacgccCgtttccaaacatctttcgca	7	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128046272	A	A	128046272	3	1	9	1	0	0	0	0	1	0	0	0	5256	652	23	1	1393	1	ERCC3	2	128046272	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1890	128046272	115153101	3274	11425											
ERCC3	2071	broad.mit.edu	37	chr2	128046303	128046303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttcgcaagctcttctcCtgatagggtctgaggacagc	10	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128046303	A	A	128046303	3	1	9	1	0	0	0	0	1	0	0	0	5256	680	24	2	1424	2	ERCC3	2	128046303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	128046303	115153070	3275	11426											
ERCC3	2071	broad.mit.edu	37	chr2	128047772	128047772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaaagtgacagtgccttGggacaggcctgtcatggaat	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128047772	T	T	128047772	1	4	9	0	1	0	0	0	0	0	0	0	5256	1363	47	2		2	ERCC3	2	128047772	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1469	128047772	115151601	3276	11427											
MAP3K2	10746	broad.mit.edu	37	chr2	128066288	128066288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagccgtttgctggcccCaaaatctcctagtttgacgt	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128066288	A	A	128066288	3	1	9	1	0	0	0	0	1	0	0	0	9342	594	21	2	360	2	MAP3K2	2	128066288	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18516	128066288	115133085	3277	11428											
PROC	5624	broad.mit.edu	37	chr2	128184623	128184623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatatgaaacccaggtgccCtggactggaggctgtcagga	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128184623	A	A	128184623	1	1	9	0	1	0	0	0	0	0	0	0	12651	696	24	2		2	PROC	2	128184623	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	118335	128184623	115014750	3278	11429											
PROC	5624	broad.mit.edu	37	chr2	128186121	128186121	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagcggccttgcagagcgcGagctcaatcaggccggccag	14	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128186121	T	T	128186121	4	4	9	1	0	0	0	0	0	1	0	0	12651	1059	37	3	1015	3	PROC	2	128186121	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1498	128186121	115013252	3279	11430											
PROC	5624	broad.mit.edu	37	chr2	128186156	128186156	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggagaccctcgtgacGggctggggctaccacagcag	16	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128186156	T	T	128186156	2	4	9	1	0	0	0	0	0	0	0	1	12651	1103	39	1		1	PROC	2	128186156	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	128186156	115013217	3280	11431											
PROC	5624	broad.mit.edu	37	chr2	128186234	128186234	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacttcatcaagattccCgtggtcccgcacaatgagtg	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128186234	A	A	128186234	2	1	9	1	0	0	0	0	0	0	0	1	12651	639	23	1		1	PROC	2	128186234	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	128186234	115013139	3281	11432											
PROC	5624	broad.mit.edu	37	chr2	128186444	128186444	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaactacggcgtttacacCaaagtcagccgctacctcga	7	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128186444	A	A	128186444	2	1	9	1	0	0	0	0	0	0	0	1	12651	581	21	2		2	PROC	2	128186444	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	210	128186444	115012929	3282	11433											
IWS1	55677	broad.mit.edu	37	chr2	128247513	128247513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaaatataggcctagacCactcatctgtagtaagaaaa	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128247513	A	A	128247513	3	1	9	1	0	0	0	0	1	0	0	0	8001	595	21	2	421	2	IWS1	2	128247513	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61069	128247513	114951860	3283	11434											
IWS1	55677	broad.mit.edu	37	chr2	128253484	128253484	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagcaaagcatcttaaTtgtagtttaagggttaagta	8	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128253484	C	C	128253484	1	2	9	0	1	0	0	0	0	0	0	0	8001	1508	52	5		5	IWS1	2	128253484	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	5971	128253484	114945889	3284	11435											
IWS1	55677	broad.mit.edu	37	chr2	128253656	128253656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgccaccatcgcggttcCgtctgcgcttgccactcatg	11	15	2	0	rs143966754		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128253656	A	A	128253656	3	1	9	1	0	0	0	0	1	0	0	0	8001	652	23	1	857	1	IWS1	2	128253656	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	172	128253656	114945717	3285	11436											
MYO7B	4648	broad.mit.edu	37	chr2	128317303	128317303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgctgactcaggatgtcGgggttcaggctggtaagaat	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128317303	T	T	128317303	2	4	9	1	0	0	0	0	0	0	0	1	10177	1103	39	1		1	MYO7B	2	128317303	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	63647	128317303	114882070	3286	11437											
MYO7B	4648	broad.mit.edu	37	chr2	128367256	128367256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcggcccctccgataccCgttgctttaccacgaagatg	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128367256	A	A	128367256	3	1	9	1	0	0	0	0	1	0	0	0	10177	652	23	1	3076	1	MYO7B	2	128367256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49953	128367256	114832117	3287	11438											
GPR17	2840	broad.mit.edu	37	chr2	128408716	128408716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctggccattgtgcaccCggtcaagtccctcaagctcc	8	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128408716	A	A	128408716	3	1	9	1	0	0	0	0	1	0	0	0	6732	652	23	1	497	1	GPR17	2	128408716	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41460	128408716	114790657	3288	11439											
POLR2D	5433	broad.mit.edu	37	chr2	128610545	128610545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttgaaacgactgaaacGggctgtgtagtttaatgttt	11	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128610545	T	T	128610545	3	4	9	1	0	0	0	0	1	0	0	0	12312	1116	39	1	232	1	POLR2D	2	128610545	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	201829	128610545	114588828	3289	11440											
UGGT1	56886	broad.mit.edu	37	chr2	128861627	128861627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctttgactttggtgtctGggaaaatattaggaaaaaat	9	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128861627	T	T	128861627	1	4	9	0	1	0	0	0	0	0	0	0	17067	1363	47	2		2	UGGT1	2	128861627	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	251082	128861627	114337746	3290	11441											
UGGT1	56886	broad.mit.edu	37	chr2	128867166	128867166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtctttatctcgtctttGgttagaaatttaaaaagtat	6	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128867166	T	T	128867166	1	4	9	0	1	0	0	0	0	0	0	0	17067	1363	47	2		2	UGGT1	2	128867166	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5539	128867166	114332207	3291	11442											
UGGT1	56886	broad.mit.edu	37	chr2	128938654	128938654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgctgatcaggtaggccCttaaaggccaagttttgaca	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128938654	A	A	128938654	1	1	9	0	1	0	0	0	0	0	0	0	17067	696	24	2		2	UGGT1	2	128938654	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	71488	128938654	114260719	3292	11443											
UGGT1	56886	broad.mit.edu	37	chr2	128944380	128944380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccattgatttggtaagcCgtatgtggtgtgcttctgca	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128944380	A	A	128944380	1	1	9	0	1	0	0	0	0	0	0	0	17067	667	23	1		1	UGGT1	2	128944380	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5726	128944380	114254993	3293	11444											
POTEF	728378	broad.mit.edu	37	chr2	130832626	130832626	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttagggttcagggtggcctCggtcagcaggacggggtgct	18	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130832626	A	A	130832626	4	1	9	1	0	0	0	0	0	1	0	0	12361	893	31	3	812	3	POTEF	2	130832626	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1888246	130832626	112366747	3294	11445											
SMPD4	55627	broad.mit.edu	37	chr2	130925203	130925203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccgagttacaggctccCgctgtaactcgctcccgctg	11	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130925203	A	A	130925203	1	1	9	0	1	0	0	0	0	0	0	0	14921	667	23	1		1	SMPD4	2	130925203	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92577	130925203	112274170	3295	11446											
TUBA3E	112714	broad.mit.edu	37	chr2	130953852	130953852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttggcatttgaccatcGggctgaattccatgttcaag	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130953852	T	T	130953852	2	4	9	1	0	0	0	0	0	0	0	1	16874	1103	39	1		1	TUBA3E	2	130953852	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28649	130953852	112245521	3296	11447											
PTPN18	26469	broad.mit.edu	37	chr2	131126550	131126550	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagtctgcatgtgtttaatCtgatggctctgttggctggc	13	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131126550	T	T	131126550	1	4	9	0	1	0	0	0	0	0	0	0	12890	928	32	4		4	PTPN18	2	131126550	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	172698	131126550	112072823	3297	11448											
FAM168B	130074	broad.mit.edu	37	chr2	131812893	131812893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatgcccatggtgacccCgttgcctctaggagggggga	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131812893	A	A	131812893	3	1	9	1	0	0	0	0	1	0	0	0	5531	652	23	1	168	1	FAM168B	2	131812893	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	686343	131812893	111386480	3298	11449											
PLEKHB2	55041	broad.mit.edu	37	chr2	131904134	131904134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagatcccttttgtgaaaGgagaactggtactttgcgtg	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131904134	T	T	131904134	1	4	9	0	1	0	0	0	0	0	0	0	12160	1015	35	2		2	PLEKHB2	2	131904134	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	91241	131904134	111295239	3299	11450											
POTEE	445582	broad.mit.edu	37	chr2	131984420	131984420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcacaccactgttacttGgtgtacatgagcaaaaacag	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131984420	T	T	131984420	3	4	9	1	0	0	0	0	1	0	0	0	12360	1348	47	2	849	2	POTEE	2	131984420	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80286	131984420	111214953	3300	11451											
TUBA3D	113457	broad.mit.edu	37	chr2	132235769	132235769	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatccacgtggggcaggcGggtgtccagatcggcaatgc	15	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132235769	T	T	132235769	2	4	9	1	0	0	0	0	0	0	0	1	16873	1103	39	1		1	TUBA3D	2	132235769	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	251349	132235769	110963604	3301	11452											
TUBA3D	113457	broad.mit.edu	37	chr2	132236942	132236942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagctgatcaccgggaaGgaagatgcagccaataatta	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132236942	T	T	132236942	3	4	9	1	0	0	0	0	1	0	0	0	16873	991	35	2	298	2	TUBA3D	2	132236942	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1173	132236942	110962431	3302	11453											
TUBA3D	113457	broad.mit.edu	37	chr2	132240273	132240273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatctcatgtatgccaagcGggcctttgtgcactggtacg	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132240273	T	T	132240273	3	4	9	1	0	0	0	0	1	0	0	0	16873	1116	39	1	1223	1	TUBA3D	2	132240273	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3331	132240273	110959100	3303	11454											
TUBA3D	113457	broad.mit.edu	37	chr2	132240332	132240332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagagttctctgaggccCgcgaggacctggcagctcta	15	11	2	2	rs147030351	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132240332	A	A	132240332	3	1	9	1	0	0	0	0	1	0	0	0	16873	652	23	1	1282	1	TUBA3D	2	132240332	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	132240332	110959041	3304	11455											
TUBA3D	113457	broad.mit.edu	37	chr2	132240385	132240385	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggtgggcgtggattcCgtggaagctgaggctgaaga	19	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132240385	G	G	132240385	2	3	9	1	0	0	0	0	0	0	0	1	16873	639	23	4		4	TUBA3D	2	132240385	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	132240385	110958988	3305	11456											
NCKAP5	344148	broad.mit.edu	37	chr2	133541012	133541012	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgttatggcttttggcGggtgatgaggatgatgagga	19	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133541012	T	T	133541012	2	4	9	1	0	0	0	0	0	0	0	1	10318	1103	39	1		1	NCKAP5	2	133541012	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1300627	133541012	109658361	3306	11457											
NCKAP5	344148	broad.mit.edu	37	chr2	133541927	133541927	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtagtgtggtggcttcGggctccattagttttgattt	15	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133541927	T	T	133541927	2	4	9	1	0	0	0	0	0	0	0	1	10318	1103	39	1		1	NCKAP5	2	133541927	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	915	133541927	109657446	3307	11458											
NCKAP5	344148	broad.mit.edu	37	chr2	133542365	133542365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgggctcaccgtcttcCgcatcaaatatcacagtcac	6	14	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133542365	A	A	133542365	2	1	9	1	0	0	0	0	0	0	0	1	10318	639	23	1		1	NCKAP5	2	133542365	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	438	133542365	109657008	3308	11459											
NCKAP5	344148	broad.mit.edu	37	chr2	133542729	133542729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggcgtctgcacacttGggcacagcttcatctctaag	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133542729	T	T	133542729	3	4	9	1	0	0	0	0	1	0	0	0	10318	1348	47	2	4102	2	NCKAP5	2	133542729	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	364	133542729	109656644	3309	11460											
MGAT5	4249	broad.mit.edu	37	chr2	135093880	135093880	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaagtgattttggaaaactCtttctagacttgtgcattta	8	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135093880	A	A	135093880	1	1	9	0	1	0	0	0	0	0	0	0	9641	928	32	3		3	MGAT5	2	135093880	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1551151	135093880	108105493	3310	11461											
MGAT5	4249	broad.mit.edu	37	chr2	135120073	135120073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataatcaagccaagtgccCagggcttaatgggatctact	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135120073	A	A	135120073	1	1	9	0	1	0	0	0	0	0	0	0	9641	609	21	2		2	MGAT5	2	135120073	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26193	135120073	108079300	3311	11462											
TMEM163	81615	broad.mit.edu	37	chr2	135470767	135470767	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgacgagacccttgatactCactaaaggcagccaccgcga	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135470767	A	A	135470767	1	1	9	0	1	0	0	0	0	0	0	0	16201	841	29	3		3	TMEM163	2	135470767	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	350694	135470767	107728606	3312	11463											
TMEM163	81615	broad.mit.edu	37	chr2	135470869	135470869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcgtgaggtttcaggcGggtgctgctttctagtaagc	15	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135470869	T	T	135470869	3	4	9	1	0	0	0	0	1	0	0	0	16201	1116	39	1	674	1	TMEM163	2	135470869	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	102	135470869	107728504	3313	11464											
TMEM163	81615	broad.mit.edu	37	chr2	135470989	135470989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattgcaaactaacagccCgtgggccaagacgtgttttg	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135470989	A	A	135470989	1	1	9	0	1	0	0	0	0	0	0	0	16201	667	23	1		1	TMEM163	2	135470989	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	120	135470989	107728384	3314	11465											
ACMSD	130013	broad.mit.edu	37	chr2	135619538	135619538	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctttgtgtccatgtctaGgagtaacagtgcaagccctt	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135619538	T	T	135619538	5	4	9	1	0	0	0	0	0	0	1	0	144	1014	35	2	213	2	ACMSD	2	135619538	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	148549	135619538	107579835	3315	11466											
YSK4	80122	broad.mit.edu	37	chr2	135763042	135763042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcctgtctaccaccactGggatcttcttcttcattaac	5	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135763042	T	T	135763042	2	4	9	1	0	0	0	0	0	0	0	1	17622	1335	47	2		2	YSK4	2	135763042	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	143504	135763042	107436331	3316	11467											
YSK4	80122	broad.mit.edu	37	chr2	135782158	135782158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatctaacaggaatttttGggttgggaaattatgcatgt	12	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135782158	T	T	135782158	1	4	9	0	1	0	0	0	0	0	0	0	17622	1363	47	2		2	YSK4	2	135782158	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19116	135782158	107417215	3317	11468											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135911339	135911339	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaggagaactgagtgccCggatgaagattccaagcaat	12	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135911339	A	A	135911339	2	1	9	1	0	0	0	0	0	0	0	1	13043	643	23	1		1	RAB3GAP1	2	135911339	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	129181	135911339	107288034	3318	11469											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135920604	135920604	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctctcattgccagagctCggtcactaaaagccaagttt	8	11	2	1	rs148557417		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135920604	A	A	135920604	2	1	9	1	0	0	0	0	0	0	0	1	13043	875	31	3		3	RAB3GAP1	2	135920604	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9265	135920604	107278769	3319	11470											
R3HDM1	23518	broad.mit.edu	37	chr2	136396538	136396538	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatgagttgaagtactcGgaaccacgaccctggagcag	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136396538	T	T	136396538	2	4	9	1	0	0	0	0	0	0	0	1	12995	1103	39	1		1	R3HDM1	2	136396538	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	475934	136396538	106802835	3320	11471											
R3HDM1	23518	broad.mit.edu	37	chr2	136409252	136409252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttttctttgataagtttGgcctatgtgtagaaggctta	9	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136409252	T	T	136409252	1	4	9	0	1	0	0	0	0	0	0	0	12995	1363	47	2		2	R3HDM1	2	136409252	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12714	136409252	106790121	3321	11472											
LCT	3938	broad.mit.edu	37	chr2	136567191	136567191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcggaagaggacacgcccCacagaaagtcatcccgaaac	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136567191	A	A	136567191	3	1	9	1	0	0	0	0	1	0	0	0	8765	595	21	2	3097	2	LCT	2	136567191	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	157939	136567191	106632182	3322	11473											
MCM6	4175	broad.mit.edu	37	chr2	136603933	136603933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattgtagccattgatccCgttcacaggagcagggctgt	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136603933	A	A	136603933	3	1	9	1	0	0	0	0	1	0	0	0	9484	652	23	1	394	1	MCM6	2	136603933	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36742	136603933	106595440	3323	11474											
MCM6	4175	broad.mit.edu	37	chr2	136620128	136620128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtagcacagccagcctgGgaactatgtacactttttcc	9	11	0	0	rs138453574	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136620128	T	T	136620128	1	4	9	0	1	0	0	0	0	0	0	0	9484	1247	43	2		2	MCM6	2	136620128	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16195	136620128	106579245	3324	11475											
MCM6	4175	broad.mit.edu	37	chr2	136623824	136623824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcaacaccactgacacGggaattagtttctgcacgtg	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136623824	T	T	136623824	3	4	9	1	0	0	0	0	1	0	0	0	9484	1116	39	1	1708	1	MCM6	2	136623824	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3696	136623824	106575549	3325	11476											
DARS	1615	broad.mit.edu	37	chr2	136670056	136670056	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaaaccaaattacttacGggatttcttgggtcaggcat	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136670056	T	T	136670056	2	4	9	1	0	0	0	0	0	0	0	1	4274	1130	39	1		1	DARS	2	136670056	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46232	136670056	106529317	3326	11477											
CXCR4	7852	broad.mit.edu	37	chr2	136872558	136872558	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaggtgagtgcgtgctGggcagaggttttaaatttgg	16	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136872558	T	T	136872558	3	4	9	1	0	0	0	0	1	0	0	0	4126	1357	47	2	122	2	CXCR4	2	136872558	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	202502	136872558	106326815	3327	11478											
CXCR4	7852	broad.mit.edu	37	chr2	136873279	136873279	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcagcctgtacttgtcCgtcatgcttctcagtttctt	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136873279	A	A	136873279	2	1	9	1	0	0	0	0	0	0	0	1	4126	639	23	1		1	CXCR4	2	136873279	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	721	136873279	106326094	3328	11479											
CXCR4	7852	broad.mit.edu	37	chr2	136873537	136873537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattcagcaagcattaaccCagttaaaaaaaatttttaaa	3	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136873537	A	A	136873537	1	1	9	0	1	0	0	0	0	0	0	0	4126	609	21	2		2	CXCR4	2	136873537	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	258	136873537	106325836	3329	11480											
THSD7B	80731	broad.mit.edu	37	chr2	137814476	137814476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcgcgcggtcatagctcCccctctctttggtggtttgc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137814476	A	A	137814476	3	1	9	1	0	0	0	0	1	0	0	0	16003	623	22	2	539	2	THSD7B	2	137814476	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	940939	137814476	105384897	3330	11481											
THSD7B	80731	broad.mit.edu	37	chr2	138373809	138373809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccatcactgaactcaaGgacttgtgctgaagactcac	8	11	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138373809	T	T	138373809	3	4	9	1	0	0	0	0	1	0	0	0	16003	1000	35	2	3466	2	THSD7B	2	138373809	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	559333	138373809	104825564	3331	11482											
THSD7B	80731	broad.mit.edu	37	chr2	138414547	138414547	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcccttgtacaggtaccaaGagcacttttcagttctttag	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138414547	T	T	138414547	1	4	9	0	1	0	0	0	0	0	0	0	16003	957	33	3		3	THSD7B	2	138414547	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	40738	138414547	104784826	3332	11483											
HNMT	3176	broad.mit.edu	37	chr2	138722098	138722098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcttgttttctgaccacGggaaatatgttgaatctttc	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138722098	T	T	138722098	3	4	9	1	0	0	0	0	1	0	0	0	7322	1116	39	1	39	1	HNMT	2	138722098	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	307551	138722098	104477275	3333	11484											
HNMT	3176	broad.mit.edu	37	chr2	138738798	138738798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcagattgtctcattcGgggaagctccagggttctca	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138738798	T	T	138738798	1	4	9	0	1	0	0	0	0	0	0	0	7322	1116	39	1		1	HNMT	2	138738798	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16700	138738798	104460575	3334	11485											
SPOPL	339745	broad.mit.edu	37	chr2	139326647	139326647	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaaacggctaaaacagtcCtgaaatcttccatgaacagt	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139326647	A	A	139326647	2	1	9	1	0	0	0	0	0	0	0	1	15203	668	24	2		2	SPOPL	2	139326647	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	587849	139326647	103872726	3335	11486											
LRP1B	53353	broad.mit.edu	37	chr2	140990795	140990795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccaatttctattttctttGgaagcagttctttcctttca	4	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140990795	T	T	140990795	3	4	9	1	0	0	0	0	1	0	0	0	9042	1348	47	2	43	2	LRP1B	2	140990795	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1664148	140990795	102208578	3336	11487											
LRP1B	53353	broad.mit.edu	37	chr2	140992354	140992354	+	Splice_Site	DEL	C	-	-													taacgaatattcttctctcaCcccagcagttagtggtcctt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140992354	-	-	140992354	8	5	9	1	0	1	0	1	0	0	1	0	9042	521	18	0	147	0	LRP1B	2	140992354	Splice_Site	DEL	C	TCGA-05-4396-01A-21D-1855-08	1559	140992354	102207019	3337	11488											
LRP1B	53353	broad.mit.edu	37	chr2	141130658	141130658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgctggtatacactgacCattggaacaccggaactgat	9	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141130658	A	A	141130658	3	1	9	1	0	0	0	0	1	0	0	0	9042	594	21	2	3204	2	LRP1B	2	141130658	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138304	141130658	102068715	3338	11489											
LRP1B	53353	broad.mit.edu	37	chr2	141215114	141215114	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagagtctgtctgctccCgatgttttatgggcacggct	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141215114	A	A	141215114	2	1	9	1	0	0	0	0	0	0	0	1	9042	639	23	1		1	LRP1B	2	141215114	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84456	141215114	101984259	3339	11490											
LRP1B	53353	broad.mit.edu	37	chr2	141264383	141264383	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accacactgcggtgactcatCagagccatctccacagtcgt	8	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141264383	T	T	141264383	3	4	9	1	0	0	0	0	1	0	0	0	9042	826	29	4	5452	4	LRP1B	2	141264383	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49269	141264383	101934990	3340	11491											
LRP1B	53353	broad.mit.edu	37	chr2	141473606	141473606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaaataattacataacGgaaagaaccattgagtcttg	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141473606	T	T	141473606	3	4	9	1	0	0	0	0	1	0	0	0	9042	1116	39	1	8060	1	LRP1B	2	141473606	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	209223	141473606	101725767	3341	11492											
LRP1B	53353	broad.mit.edu	37	chr2	141533792	141533792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctaagttttggtctgccCaccacagtttcttatctaga	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141533792	A	A	141533792	3	1	9	1	0	0	0	0	1	0	0	0	9042	595	21	2	8660	2	LRP1B	2	141533792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60186	141533792	101665581	3342	11493											
LRP1B	53353	broad.mit.edu	37	chr2	141598583	141598583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgccacattaatttgcGtttcatcaaattctgagcta	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141598583	T	T	141598583	3	4	9	1	0	0	0	0	1	0	0	0	9042	1145	40	3	9029	3	LRP1B	2	141598583	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64791	141598583	101600790	3343	11494											
LRP1B	53353	broad.mit.edu	37	chr2	141625812	141625812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgaggaaaatttgcatccCagtctgtccagaaaagaatt	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141625812	A	A	141625812	3	1	9	1	0	0	0	0	1	0	0	0	9042	595	21	2	9873	2	LRP1B	2	141625812	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27229	141625812	101573561	3344	11495											
LRP1B	53353	broad.mit.edu	37	chr2	141777654	141777654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccagtccacagcaatgcCctctacattatccagatcta	4	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141777654	A	A	141777654	3	1	9	1	0	0	0	0	1	0	0	0	9042	623	22	2	12312	2	LRP1B	2	141777654	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151842	141777654	101421719	3345	11496											
GTDC1	79712	broad.mit.edu	37	chr2	144710391	144710391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacaaagtgggtaacaccCacagtacacagcttccaacc	8	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144710391	A	A	144710391	3	1	9	1	0	0	0	0	1	0	0	0	6916	594	21	2	238	2	GTDC1	2	144710391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2932737	144710391	98488982	3346	11497											
ZEB2	9839	broad.mit.edu	37	chr2	145153943	145153943	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgaaatgtacagcaggacGggaagctctaaccagttagg	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145153943	C	C	145153943	1	2	9	0	1	0	0	0	0	0	0	0	17750	1131	39	4		4	ZEB2	2	145153943	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	443552	145153943	98045430	3347	11498											
ZEB2	9839	broad.mit.edu	37	chr2	145156296	145156296	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttcatttgttttggtaAtgacaagtctaaaggctcag	8	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145156296	C	C	145156296	3	2	9	1	0	0	0	0	1	0	0	0	17750	98	4	5	1198	5	ZEB2	2	145156296	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	2353	145156296	98043077	3348	11499											
ZEB2	9839	broad.mit.edu	37	chr2	145156546	145156546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtgatgttatggagtcCataggttttacaggagacct	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145156546	A	A	145156546	3	1	9	1	0	0	0	0	1	0	0	0	17750	594	21	2	1448	2	ZEB2	2	145156546	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	250	145156546	98042827	3349	11500											
ZEB2	9839	broad.mit.edu	37	chr2	145157532	145157532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggactagtgccactaaaccCgtgtgtagccataagaactt	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145157532	A	A	145157532	3	1	9	1	0	0	0	0	1	0	0	0	17750	652	23	1	2434	1	ZEB2	2	145157532	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	986	145157532	98041841	3350	11501											
ACVR2A	92	broad.mit.edu	37	chr2	148657415	148657415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgtcatttgtgcattttGggtgtacaggcatcacaaga	11	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148657415	T	T	148657415	3	4	9	1	0	0	0	0	1	0	0	0	223	1357	47	2	490	2	ACVR2A	2	148657415	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3499883	148657415	94541958	3351	11502											
MBD5	55777	broad.mit.edu	37	chr2	149227682	149227682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatagtaccccgggttgtGgggcctcaaatactgctttg	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149227682	T	T	149227682	3	4	9	1	0	0	0	0	1	0	0	0	9440	1348	47	2	2184	2	MBD5	2	149227682	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	570267	149227682	93971691	3352	11503											
MBD5	55777	broad.mit.edu	37	chr2	149247083	149247083	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaccttgtgagttgcaaccGaggattgacccatctcttgg	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149247083	T	T	149247083	2	4	9	1	0	0	0	0	0	0	0	1	9440	1045	37	3		3	MBD5	2	149247083	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19401	149247083	93952290	3353	11504											
MBD5	55777	broad.mit.edu	37	chr2	149247577	149247577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccatatccacagtagtcCttgtcatgaaaggcccaaca	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149247577	A	A	149247577	3	1	9	1	0	0	0	0	1	0	0	0	9440	681	24	2	3703	2	MBD5	2	149247577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	494	149247577	93951796	3354	11505											
KIF5C	3800	broad.mit.edu	37	chr2	149798494	149798494	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagataaaaacagagtccCgtatgtaaaggtatgaggaa	11	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149798494	A	A	149798494	3	1	9	1	0	0	0	0	1	0	0	0	8377	652	23	1	435	1	KIF5C	2	149798494	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	550917	149798494	93400879	3355	11506											
KIF5C	3800	broad.mit.edu	37	chr2	149799276	149799276	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgacacgtggctgtgacaagTaagcatggtgggggtgtttc	16	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149799276	A	A	149799276	5	1	9	1	0	0	0	0	0	0	1	0	8377	1652	57	5	539	5	KIF5C	2	149799276	Splice_Site	SNP	T	TCGA-05-4396-01A-21D-1855-08	782	149799276	93400097	3356	11507											
LYPD6B	130576	broad.mit.edu	37	chr2	150069636	150069636	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgagattctgaacatacGgtaaggatcgtgtgtgtgtg	14	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150069636	T	T	150069636	2	4	9	1	0	0	0	0	0	0	0	1	9203	1130	39	1		1	LYPD6B	2	150069636	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	270360	150069636	93129737	3357	11508											
LYPD6	130574	broad.mit.edu	37	chr2	150327196	150327196	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttcttcctttctttcaGgtctgcacttcttgttgtga	6	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150327196	T	T	150327196	5	4	9	1	0	0	0	0	0	0	1	0	9202	1014	35	2	362	2	LYPD6	2	150327196	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	257560	150327196	92872177	3358	11509											
NMI	9111	broad.mit.edu	37	chr2	152127170	152127170	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaacatttacagtaatccGggttaaaaagctatagtttt	6	6	1	0	rs3771885	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152127170	T	T	152127170	1	4	9	0	1	0	0	0	0	0	0	0	10592	1131	39	1		1	NMI	2	152127170	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1799974	152127170	91072203	3359	11510											
RIF1	55183	broad.mit.edu	37	chr2	152273181	152273181	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatctaagcagacatttccCtctgaagtggttggcaaaat	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152273181	A	A	152273181	2	1	9	1	0	0	0	0	0	0	0	1	13468	668	24	2		2	RIF1	2	152273181	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	146011	152273181	90926192	3360	11511											
RIF1	55183	broad.mit.edu	37	chr2	152273218	152273218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggtgagtatagtttttGggtatgccatcttaactata	9	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152273218	T	T	152273218	1	4	9	0	1	0	0	0	0	0	0	0	13468	1363	47	2		2	RIF1	2	152273218	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	152273218	90926155	3361	11512											
RIF1	55183	broad.mit.edu	37	chr2	152285372	152285372	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttcgtagtggagcaccCatgattaaaaagatagcttt	10	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152285372	A	A	152285372	2	1	9	1	0	0	0	0	0	0	0	1	13468	581	21	2		2	RIF1	2	152285372	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12154	152285372	90914001	3362	11513											
RIF1	55183	broad.mit.edu	37	chr2	152292033	152292033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctaatgcctcacctcaGggcaattcgtgtcatgtagc	9	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152292033	T	T	152292033	3	4	9	1	0	0	0	0	1	0	0	0	13468	991	35	2	1172	2	RIF1	2	152292033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6661	152292033	90907340	3363	11514											
RIF1	55183	broad.mit.edu	37	chr2	152308103	152308103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgaatgtttctaacagtGgtactttcttccctagaatt	6	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152308103	T	T	152308103	1	4	9	0	1	0	0	0	0	0	0	0	13468	1363	47	2		2	RIF1	2	152308103	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16070	152308103	90891270	3364	11515											
RIF1	55183	broad.mit.edu	37	chr2	152318980	152318980	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctaagatgatgattacGgtatgtttgacatttcatat	8	4	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152318980	T	T	152318980	2	4	9	1	0	0	0	0	0	0	0	1	13468	1130	39	1		1	RIF1	2	152318980	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10877	152318980	90880393	3365	11516											
NEB	4703	broad.mit.edu	37	chr2	152346521	152346521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagatgggatggaagatacCgttgtctgttgggtagcaac	15	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152346521	A	A	152346521	2	1	9	1	0	0	0	0	0	0	0	1	10397	639	23	1		1	NEB	2	152346521	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27541	152346521	90852852	3366	11517											
NEB	4703	broad.mit.edu	37	chr2	152348681	152348681	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttcctctgaatacctcGgtagttaatgtcactgaagt	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152348681	T	T	152348681	2	4	9	1	0	0	0	0	0	0	0	1	10397	1124	39	1		1	NEB	2	152348681	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2160	152348681	90850692	3367	11518											
NEB	4703	broad.mit.edu	37	chr2	152362733	152362733	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatctcaggtgtctttcCgatagccgttcctggtgaga	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152362733	A	A	152362733	4	1	9	1	0	0	0	0	0	1	0	0	10397	661	23	1	2057	1	NEB	2	152362733	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14052	152362733	90836640	3368	11519											
NEB	4703	broad.mit.edu	37	chr2	152374883	152374883	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagctgctccagattatcGggtatggtgtggtagtggcc	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152374883	T	T	152374883	2	4	9	1	0	0	0	0	0	0	0	1	10397	1103	39	1		1	NEB	2	152374883	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12150	152374883	90824490	3369	11520											
NEB	4703	broad.mit.edu	37	chr2	152381138	152381138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtaagcgacctttattGgggaagaaaatgtttactca	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152381138	T	T	152381138	1	4	9	0	1	0	0	0	0	0	0	0	10397	1363	47	2		2	NEB	2	152381138	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6255	152381138	90818235	3370	11521											
NEB	4703	broad.mit.edu	37	chr2	152382567	152382567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaagtgcttcttgacatGgtccttgtacttgttctggg	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152382567	T	T	152382567	3	4	9	1	0	0	0	0	1	0	0	0	10397	1348	47	2	3643	2	NEB	2	152382567	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1429	152382567	90816806	3371	11522											
NEB	4703	broad.mit.edu	37	chr2	152394711	152394711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtctagggcatctttcacCgtgtggtatttccctttggt	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152394711	A	A	152394711	2	1	9	1	0	0	0	0	0	0	0	1	10397	639	23	1		1	NEB	2	152394711	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12144	152394711	90804662	3372	11523											
NEB	4703	broad.mit.edu	37	chr2	152410393	152410393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcattgacttgcaagtcGgggtggcaaatccattcgtg	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152410393	T	T	152410393	2	4	9	1	0	0	0	0	0	0	0	1	10397	1103	39	1		1	NEB	2	152410393	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15682	152410393	90788980	3373	11524											
NEB	4703	broad.mit.edu	37	chr2	152418666	152418666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggcatggaggatttgGggtgtatcccaaacgtagca	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152418666	T	T	152418666	2	4	9	1	0	0	0	0	0	0	0	1	10397	1219	43	2		2	NEB	2	152418666	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8273	152418666	90780707	3374	11525											
NEB	4703	broad.mit.edu	37	chr2	152432294	152432294	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagttttatccttgtccCaaacctctctgtactttggc	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152432294	A	A	152432294	3	1	9	1	0	0	0	0	1	0	0	0	10397	595	21	2	9062	2	NEB	2	152432294	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13628	152432294	90767079	3375	11526											
NEB	4703	broad.mit.edu	37	chr2	152474774	152474774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcggtatctaacagtgaGgattgaagactcaccttatt	8	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152474774	T	T	152474774	1	4	9	0	1	0	0	0	0	0	0	0	10397	1015	35	2		2	NEB	2	152474774	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42480	152474774	90724599	3376	11527											
NEB	4703	broad.mit.edu	37	chr2	152474840	152474840	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacctgctccggagtgtcCgttatactggtaaatttcag	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152474840	A	A	152474840	2	1	9	1	0	0	0	0	0	0	0	1	10397	639	23	1		1	NEB	2	152474840	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	152474840	90724533	3377	11528											
NEB	4703	broad.mit.edu	37	chr2	152484233	152484233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtccttcttatactccCtgtcactctggatcttggcc	6	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152484233	A	A	152484233	3	1	9	1	0	0	0	0	1	0	0	0	10397	681	24	2	16195	2	NEB	2	152484233	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9393	152484233	90715140	3378	11529											
NEB	4703	broad.mit.edu	37	chr2	152484297	152484297	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcatcttcaatgttccGggctccaatgtggtggccga	14	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152484297	T	T	152484297	2	4	9	1	0	0	0	0	0	0	0	1	10397	1115	39	1		1	NEB	2	152484297	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	64	152484297	90715076	3379	11530											
NEB	4703	broad.mit.edu	37	chr2	152490337	152490337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctgaacttggtcttcCacttctcaaagtcctttttg	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152490337	A	A	152490337	1	1	9	0	1	0	0	0	0	0	0	0	10397	595	21	2		2	NEB	2	152490337	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6040	152490337	90709036	3380	11531											
NEB	4703	broad.mit.edu	37	chr2	152496998	152496998	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacttcttggccagcacCacccccagcatgtccactgg	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152496998	A	A	152496998	2	1	9	1	0	0	0	0	0	0	0	1	10397	581	21	2		2	NEB	2	152496998	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6661	152496998	90702375	3381	11532											
NEB	4703	broad.mit.edu	37	chr2	152500383	152500383	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgacatcgctctggtcGggcaggcatgtccactggtg	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152500383	T	T	152500383	2	4	9	1	0	0	0	0	0	0	0	1	10397	1103	39	1		1	NEB	2	152500383	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3385	152500383	90698990	3382	11533											
NEB	4703	broad.mit.edu	37	chr2	152500480	152500480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccccagcatgtccactGggctgctgaacttggtcttc	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152500480	T	T	152500480	3	4	9	1	0	0	0	0	1	0	0	0	10397	1348	47	2	18382	2	NEB	2	152500480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97	152500480	90698893	3383	11534											
NEB	4703	broad.mit.edu	37	chr2	152500592	152500592	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcatcttcaatgttccGggcaccaatgtggtggccga	14	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152500592	T	T	152500592	2	4	9	1	0	0	0	0	0	0	0	1	10397	1115	39	1		1	NEB	2	152500592	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	112	152500592	90698781	3384	11535											
NEB	4703	broad.mit.edu	37	chr2	152507347	152507347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtcatcttgcagactcCggaatccaacatggtggcca	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152507347	A	A	152507347	3	1	9	1	0	0	0	0	1	0	0	0	10397	652	23	1	19238	1	NEB	2	152507347	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6755	152507347	90692026	3385	11536											
NEB	4703	broad.mit.edu	37	chr2	152512623	152512623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagactgtgatctcccttccCatgctaggattccaaccatc	6	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152512623	A	A	152512623	1	1	9	0	1	0	0	0	0	0	0	0	10397	609	21	2		2	NEB	2	152512623	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5276	152512623	90686750	3386	11537											
NEB	4703	broad.mit.edu	37	chr2	152512863	152512863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagtttttcttgtactccCgatcagattgcatcttagcc	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152512863	A	A	152512863	3	1	9	1	0	0	0	0	1	0	0	0	10397	652	23	1	19923	1	NEB	2	152512863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	240	152512863	90686510	3387	11538											
NEB	4703	broad.mit.edu	37	chr2	152527443	152527443	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttatttgctaacatagaTgcatcctcacacattgaatt	5	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152527443	C	C	152527443	1	2	9	0	1	0	0	0	0	0	0	0	10397	1479	51	5		5	NEB	2	152527443	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	14580	152527443	90671930	3388	11539											
NEB	4703	broad.mit.edu	37	chr2	152582041	152582041	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctggcgtatggctgtcCttttgttttctcaaacttct	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152582041	A	A	152582041	4	1	9	1	0	0	0	0	0	1	0	0	10397	690	24	2	26066	2	NEB	2	152582041	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54598	152582041	90617332	3389	11540											
NEB	4703	broad.mit.edu	37	chr2	152582063	152582063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgttttctcaaacttctcCttgtatttattctgaaaaga	4	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152582063	A	A	152582063	3	1	9	1	0	0	0	0	1	0	0	0	10397	680	24	2	26088	2	NEB	2	152582063	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	152582063	90617310	3390	11541											
CACNB4	785	broad.mit.edu	37	chr2	152739823	152739823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgtcgaattgcttccCggtcctcttccaaagagaca	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152739823	A	A	152739823	3	1	9	1	0	0	0	0	1	0	0	0	2581	652	23	1	1401	1	CACNB4	2	152739823	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	157760	152739823	90459550	3391	11542											
STAM2	10254	broad.mit.edu	37	chr2	152989775	152989775	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctctatccatcttatcCtaaaaaagtaacaggacact	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152989775	A	A	152989775	5	1	9	1	0	0	0	0	0	0	1	0	15367	695	24	2	715	2	STAM2	2	152989775	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	249952	152989775	90209598	3392	11543											
STAM2	10254	broad.mit.edu	37	chr2	153000394	153000394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaggtgagttcattgtcCtcaacagcttcaaaatcata	6	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153000394	A	A	153000394	3	1	9	1	0	0	0	0	1	0	0	0	15367	680	24	2	958	2	STAM2	2	153000394	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10619	153000394	90198979	3393	11544											
FMNL2	114793	broad.mit.edu	37	chr2	153437522	153437522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtttgtcttgtcagaggcGggcatgaaatcattttatca	10	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153437522	T	T	153437522	3	4	9	1	0	0	0	0	1	0	0	0	6010	1116	39	1	869	1	FMNL2	2	153437522	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	437128	153437522	89761851	3394	11545											
GALNT13	114805	broad.mit.edu	37	chr2	155157983	155157983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgttggtcatgtttttcGgaaggcaactccatacactt	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155157983	T	T	155157983	3	4	9	1	0	0	0	0	1	0	0	0	6273	1116	39	1	1063	1	GALNT13	2	155157983	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1720461	155157983	88041390	3395	11546											
GALNT5	11227	broad.mit.edu	37	chr2	158114721	158114722	+	Missense_Mutation	DNP	CG	AT	AT													cattcagtgagatcaacactCgggtcatcaaggaagacatt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	158114722	AT	AT	158114721	3	1	9	1	0	0	0	0	1	0	0	0	6278	875	31	3	129	3	GALNT5	2	158114721	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	2956738	158114721	85084652	3396	11547											
GALNT5	11227	broad.mit.edu	37	chr2	158165131	158165131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaaatgtggagaatggtGtatagcccccatccctgata	9	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158165131	T	T	158165131	3	4	9	1	0	0	0	0	1	0	0	0	6278	1377	48	3	2607	3	GALNT5	2	158165131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50410	158165131	85034242	3397	11548											
ERMN	57471	broad.mit.edu	37	chr2	158177938	158177938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcaggtgtcacagcttGggaactggcactgctcagtg	12	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158177938	T	T	158177938	3	4	9	1	0	0	0	0	1	0	0	0	5277	1357	47	2	158	2	ERMN	2	158177938	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12807	158177938	85021435	3398	11549											
ERMN	57471	broad.mit.edu	37	chr2	158182141	158182141	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgggtaaatgtagccGgaacatctgtcatgatgtgc	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158182141	C	C	158182141	3	2	9	1	0	0	0	0	1	0	0	0	5277	1116	39	4	852	4	ERMN	2	158182141	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4203	158182141	85017232	3399	11550											
ACVR1C	130399	broad.mit.edu	37	chr2	158395161	158395161	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctttctcatttcctctatcGagggatctgaaggcaccatg	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158395161	T	T	158395161	4	4	9	1	0	0	0	0	0	1	0	0	222	1059	37	3	209	3	ACVR1C	2	158395161	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	213020	158395161	84804212	3400	11551											
ACVR1C	130399	broad.mit.edu	37	chr2	158443751	158443751	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatctgtgaagcagcattcGgttttggtaacattgttgga	11	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158443751	T	T	158443751	2	4	9	1	0	0	0	0	0	0	0	1	222	1103	39	1		1	ACVR1C	2	158443751	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48590	158443751	84755622	3401	11552											
ACVR1C	130399	broad.mit.edu	37	chr2	158443769	158443769	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggttttggtaacattgttGgaactatgacagaagacttg	11	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158443769	T	T	158443769	2	4	9	1	0	0	0	0	0	0	0	1	222	1335	47	2		2	ACVR1C	2	158443769	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18	158443769	84755604	3402	11553											
ACVR1	90	broad.mit.edu	37	chr2	158594953	158594953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaactggcattcttaccGggtctgagaaccatctgttg	11	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158594953	T	T	158594953	3	4	9	1	0	0	0	0	1	0	0	0	220	1130	39	1	143	1	ACVR1	2	158594953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	151184	158594953	84604420	3403	11554											
UPP2	151531	broad.mit.edu	37	chr2	158974403	158974403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaattactccaccatgcacGgtgctgcgatgtcaccatta	7	13	1	0	rs148283386	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158974403	T	T	158974403	3	4	9	1	0	0	0	0	1	0	0	0	17139	1116	39	1	600	1	UPP2	2	158974403	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	379450	158974403	84224970	3404	11555											
UPP2	151531	broad.mit.edu	37	chr2	158977980	158977980	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagactccttctttaagcccCggtttgaacaggtcattttg	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158977980	A	A	158977980	2	1	9	1	0	0	0	0	0	0	0	1	17139	643	23	1		1	UPP2	2	158977980	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3577	158977980	84221393	3405	11556											
PKP4	8502	broad.mit.edu	37	chr2	159481607	159481607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcacgggcagcctctcCgtactcacagagacccgcct	10	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159481607	A	A	159481607	3	1	9	1	0	0	0	0	1	0	0	0	12082	652	23	1	843	1	PKP4	2	159481607	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	503627	159481607	83717766	3406	11557											
PKP4	8502	broad.mit.edu	37	chr2	159488199	159488199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggttaggaatttaattaGggtttatgtttttaacctca	10	3	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159488199	T	T	159488199	1	4	9	0	1	0	0	0	0	0	0	0	12082	1015	35	2		2	PKP4	2	159488199	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6592	159488199	83711174	3407	11558											
TANC1	85461	broad.mit.edu	37	chr2	160005674	160005674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaggccgataatgaacCgagctgttcgccggcagctc	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160005674	A	A	160005674	3	1	9	1	0	0	0	0	1	0	0	0	15663	652	23	1	400	1	TANC1	2	160005674	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	517475	160005674	83193699	3408	11559											
TANC1	85461	broad.mit.edu	37	chr2	160005792	160005792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaaccatggtaatgccCgaggaagacactacattgca	9	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160005792	A	A	160005792	1	1	9	0	1	0	0	0	0	0	0	0	15663	667	23	1		1	TANC1	2	160005792	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	118	160005792	83193581	3409	11560											
TANC1	85461	broad.mit.edu	37	chr2	160085357	160085357	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctctcgaattgaagccCaagtcctatgaagcctttta	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160085357	A	A	160085357	2	1	9	1	0	0	0	0	0	0	0	1	15663	581	21	2		2	TANC1	2	160085357	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79565	160085357	83114016	3410	11561											
BAZ2B	29994	broad.mit.edu	37	chr2	160205607	160205607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggccttttcattctgtGgtactggagattcactttta	9	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160205607	T	T	160205607	3	4	9	1	0	0	0	0	1	0	0	0	1337	1348	47	2	1494	2	BAZ2B	2	160205607	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	120250	160205607	82993766	3411	11562											
BAZ2B	29994	broad.mit.edu	37	chr2	160205687	160205687	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctgataaccctaacccCgatcctagactaggtacaga	6	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160205687	A	A	160205687	2	1	9	1	0	0	0	0	0	0	0	1	1337	639	23	1		1	BAZ2B	2	160205687	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	160205687	82993686	3412	11563											
BAZ2B	29994	broad.mit.edu	37	chr2	160245986	160245986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtttttcttgtttcaacCgctctttttccttaaaaaga	4	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160245986	A	A	160245986	3	1	9	1	0	0	0	0	1	0	0	0	1337	652	23	1	3488	1	BAZ2B	2	160245986	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40299	160245986	82953387	3413	11564											
BAZ2B	29994	broad.mit.edu	37	chr2	160261505	160261505	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccccagtactgactcttcGagtttatgttacatttaaat	5	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160261505	T	T	160261505	1	4	9	0	1	0	0	0	0	0	0	0	1337	1073	37	3		3	BAZ2B	2	160261505	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15519	160261505	82937868	3414	11565											
BAZ2B	29994	broad.mit.edu	37	chr2	160289480	160289480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaactgctttttccttcCcttgactatgcaggatggga	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160289480	A	A	160289480	3	1	9	1	0	0	0	0	1	0	0	0	1337	623	22	2	4934	2	BAZ2B	2	160289480	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27975	160289480	82909893	3415	11566											
BAZ2B	29994	broad.mit.edu	37	chr2	160303398	160303398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtacttttagtttgtccCatggaacttgaagcagtagt	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160303398	A	A	160303398	3	1	9	1	0	0	0	0	1	0	0	0	1337	594	21	2	6043	2	BAZ2B	2	160303398	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13918	160303398	82895975	3416	11567											
BAZ2B	29994	broad.mit.edu	37	chr2	160319352	160319352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcataaacagtacagaagcCgttggaataatggtctttca	9	7	2	1	rs113148433		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160319352	A	A	160319352	1	1	9	0	1	0	0	0	0	0	0	0	1337	667	23	1		1	BAZ2B	2	160319352	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15954	160319352	82880021	3417	11568											
BAZ2B	29994	broad.mit.edu	37	chr2	160335214	160335214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgctgaggatggtaacCgttctccagactccatatct	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160335214	A	A	160335214	3	1	9	1	0	0	0	0	1	0	0	0	1337	652	23	1	6629	1	BAZ2B	2	160335214	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15862	160335214	82864159	3418	11569											
LY75	4065	broad.mit.edu	37	chr2	160636685	160636685	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttatcaaaccacttgaaactCgcatctgtcaattaaggaat	5	9	3	1	rs146987171		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160636685	A	A	160636685	2	1	9	1	0	0	0	0	0	0	0	1	9187	871	31	3		3	LY75	2	160636685	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	301471	160636685	82562688	3419	11570											
LY75	4065	broad.mit.edu	37	chr2	160667129	160667129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtactggatccaccgtgacCcattctcttttgctgctgga	9	12	1	1	rs75930969		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160667129	A	A	160667129	3	1	9	1	0	0	0	0	1	0	0	0	9187	623	22	2	577	2	LY75	2	160667129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30444	160667129	82532244	3420	11571											
LY75	4065	broad.mit.edu	37	chr2	160709784	160709784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttagaattaactttacCgataagccaagtcttggcag	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160709784	A	A	160709784	3	1	9	1	0	0	0	0	1	0	0	0	9187	666	23	1	2489	1	LY75	2	160709784	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42655	160709784	82489589	3421	11572											
LY75	4065	broad.mit.edu	37	chr2	160731976	160731976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataacaagaaagacttgcGgggaaactctgccagccttc	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160731976	T	T	160731976	2	4	9	1	0	0	0	0	0	0	0	1	9187	1103	39	1		1	LY75	2	160731976	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22192	160731976	82467397	3422	11573											
PLA2R1	22925	broad.mit.edu	37	chr2	160884797	160884797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggtggactcacaatccCgactcctccaggcacttggc	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160884797	A	A	160884797	3	1	9	1	0	0	0	0	1	0	0	0	12105	652	23	1	3468	1	PLA2R1	2	160884797	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	152821	160884797	82314576	3423	11574											
ITGB6	3694	broad.mit.edu	37	chr2	160994585	160994585	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctacttactgtgtctccCactttcatgtgagagcattt	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160994585	A	A	160994585	2	1	9	1	0	0	0	0	0	0	0	1	7969	581	21	2		2	ITGB6	2	160994585	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	109788	160994585	82204788	3424	11575											
ITGB6	3694	broad.mit.edu	37	chr2	161025696	161025696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcacataatctccttgaaGgaatttcccaagttattttt	5	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161025696	T	T	161025696	1	4	9	0	1	0	0	0	0	0	0	0	7969	1015	35	2		2	ITGB6	2	161025696	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31111	161025696	82173677	3425	11576											
ITGB6	3694	broad.mit.edu	37	chr2	161029130	161029130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtccaagtgacagagccCgtcattaggaatgacgatgc	12	10	1	3	rs144253582	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161029130	A	A	161029130	3	1	9	1	0	0	0	0	1	0	0	0	7969	652	23	1	1535	1	ITGB6	2	161029130	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3434	161029130	82170243	3426	11577											
TANK	10010	broad.mit.edu	37	chr2	162091872	162091872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatttggaagccctttcCtaatcaagacagtgactcgg	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162091872	A	A	162091872	3	1	9	1	0	0	0	0	1	0	0	0	15665	681	24	2	1180	2	TANK	2	162091872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1062742	162091872	81107501	3427	11578											
SLC4A10	57282	broad.mit.edu	37	chr2	162751289	162751289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctccctcctggagaatGggatccaagcattcgaatag	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162751289	T	T	162751289	3	4	9	1	0	0	0	0	1	0	0	0	14765	1357	47	2	1422	2	SLC4A10	2	162751289	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	659417	162751289	80448084	3428	11579											
DPP4	1803	broad.mit.edu	37	chr2	162865133	162865133	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgaacacgccacttccCgatcccaggaccattgaggt	8	15	0	2	rs41268649	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162865133	A	A	162865133	2	1	9	1	0	0	0	0	0	0	0	1	4769	639	23	1		1	DPP4	2	162865133	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113844	162865133	80334240	3429	11580											
DPP4	1803	broad.mit.edu	37	chr2	162891690	162891690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacctttggatatggaaccCgtacagtctttgggtactgc	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162891690	A	A	162891690	3	1	9	1	0	0	0	0	1	0	0	0	4769	652	23	1	1614	1	DPP4	2	162891690	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26557	162891690	80307683	3430	11581											
DPP4	1803	broad.mit.edu	37	chr2	162929931	162929931	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgttcagcagaaccacGggcacggtgatgatggtgac	13	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162929931	T	T	162929931	2	4	9	1	0	0	0	0	0	0	0	1	4769	1103	39	1		1	DPP4	2	162929931	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38241	162929931	80269442	3431	11582											
GCG	2641	broad.mit.edu	37	chr2	163002130	163002130	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataagaacttacatcactGgtaaaggtcccttcagcatg	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163002130	T	T	163002130	2	4	9	1	0	0	0	0	0	0	0	1	6352	1335	47	2		2	GCG	2	163002130	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	72199	163002130	80197243	3432	11583											
GCG	2641	broad.mit.edu	37	chr2	163004008	163004008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcactgagtgggtctgcctGggaagctgagaatgatctgt	14	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163004008	T	T	163004008	3	4	9	1	0	0	0	0	1	0	0	0	6352	1357	47	2	449	2	GCG	2	163004008	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1878	163004008	80195365	3433	11584											
FAP	2191	broad.mit.edu	37	chr2	163070502	163070502	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcacatatagacaggacCgaaacattctggactctttt	7	9	3	1	rs149536412	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163070502	A	A	163070502	2	1	9	1	0	0	0	0	0	0	0	1	5730	639	23	1		1	FAP	2	163070502	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66494	163070502	80128871	3434	11585											
FAP	2191	broad.mit.edu	37	chr2	163074571	163074571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcaataactggtatatcCgtatcattaaattccgcata	6	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163074571	A	A	163074571	2	1	9	1	0	0	0	0	0	0	0	1	5730	639	23	1		1	FAP	2	163074571	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4069	163074571	80124802	3435	11586											
FAP	2191	broad.mit.edu	37	chr2	163099906	163099906	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcactggatctgtgaaaacCgttgaaaaggaccaagtctg	11	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163099906	A	A	163099906	1	1	9	0	1	0	0	0	0	0	0	0	5730	667	23	1		1	FAP	2	163099906	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	25335	163099906	80099467	3436	11587											
IFIH1	64135	broad.mit.edu	37	chr2	163133247	163133247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctccaatcagatggtGggctttgactcctacttcag	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163133247	T	T	163133247	3	4	9	1	0	0	0	0	1	0	0	0	7590	1348	47	2	847	2	IFIH1	2	163133247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33341	163133247	80066126	3437	11588											
IFIH1	64135	broad.mit.edu	37	chr2	163150049	163150049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttatttcacactttttaaGgtttacacaacagttaggca	5	8	2	0	rs74162077		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163150049	T	T	163150049	1	4	9	0	1	0	0	0	0	0	0	0	7590	1015	35	2		2	IFIH1	2	163150049	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16802	163150049	80049324	3438	11589											
IFIH1	64135	broad.mit.edu	37	chr2	163174367	163174367	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgaacagacacctacccGgtttctgtcttcaattgtca	6	12	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163174367	T	T	163174367	2	4	9	1	0	0	0	0	0	0	0	1	7590	1115	39	1		1	IFIH1	2	163174367	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24318	163174367	80025006	3439	11590											
KCNH7	90134	broad.mit.edu	37	chr2	163279987	163279987	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtacctggcagttccCgagtatagtctttggataat	11	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163279987	A	A	163279987	2	1	9	1	0	0	0	0	0	0	0	1	8107	639	23	1		1	KCNH7	2	163279987	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105620	163279987	79919386	3440	11591											
FIGN	55137	broad.mit.edu	37	chr2	164468084	164468084	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgaatagttgctgagtacGggtcggtccacaggaccttc	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164468084	T	T	164468084	2	4	9	1	0	0	0	0	0	0	0	1	5948	1103	39	1		1	FIGN	2	164468084	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1188097	164468084	78731289	3441	11592											
GRB14	2888	broad.mit.edu	37	chr2	165353968	165353968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttctggcctgagaagtcCattgctaccagggaattctc	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165353968	A	A	165353968	3	1	9	1	0	0	0	0	1	0	0	0	6823	594	21	2	505	2	GRB14	2	165353968	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	885884	165353968	77845405	3442	11593											
GRB14	2888	broad.mit.edu	37	chr2	165430256	165430256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctcaatattcatgccCgtctcttcatatttgagact	4	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165430256	A	A	165430256	1	1	9	0	1	0	0	0	0	0	0	0	6823	667	23	1		1	GRB14	2	165430256	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	76288	165430256	77769117	3443	11594											
COBLL1	22837	broad.mit.edu	37	chr2	165551685	165551685	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgatatttccaaggatttGggaggcactattttataagt	9	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165551685	T	T	165551685	2	4	9	1	0	0	0	0	0	0	0	1	3686	1335	47	2		2	COBLL1	2	165551685	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	121429	165551685	77647688	3444	11595											
COBLL1	22837	broad.mit.edu	37	chr2	165578700	165578700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcgggggcagtggagccCgcctcttcttgggtgcatcc	15	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165578700	A	A	165578700	3	1	9	1	0	0	0	0	1	0	0	0	3686	652	23	1	2655	1	COBLL1	2	165578700	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27015	165578700	77620673	3445	11596											
SLC38A11	151258	broad.mit.edu	37	chr2	165772428	165772428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccaaaagacataacccCgaccgcttgaatggcattgg	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165772428	A	A	165772428	3	1	9	1	0	0	0	0	1	0	0	0	14717	652	23	1	735	1	SLC38A11	2	165772428	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	193728	165772428	77426945	3446	11597											
SLC38A11	151258	broad.mit.edu	37	chr2	165772463	165772463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgggctttgcaaataccCaagcgtcttctgtttttggt	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165772463	A	A	165772463	3	1	9	1	0	0	0	0	1	0	0	0	14717	595	21	2	770	2	SLC38A11	2	165772463	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	165772463	77426910	3447	11598											
SCN3A	6328	broad.mit.edu	37	chr2	165947491	165947491	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgtcagggtcacagtcGggtggtgcactattaagaat	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165947491	T	T	165947491	2	4	9	1	0	0	0	0	0	0	0	1	14031	1103	39	1		1	SCN3A	2	165947491	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	175028	165947491	77251882	3448	11599											
SCN3A	6328	broad.mit.edu	37	chr2	165950854	165950854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatatggacgcatggctttGgaacattaaaggagacaagt	11	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165950854	T	T	165950854	1	4	9	0	1	0	0	0	0	0	0	0	14031	1363	47	2		2	SCN3A	2	165950854	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3363	165950854	77248519	3449	11600											
SCN3A	6328	broad.mit.edu	37	chr2	165986711	165986711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacgatgatggccaacacCaaggtgaggtttcctagagc	12	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165986711	A	A	165986711	3	1	9	1	0	0	0	0	1	0	0	0	14031	593	21	2	3389	2	SCN3A	2	165986711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35857	165986711	77212662	3450	11601											
SCN3A	6328	broad.mit.edu	37	chr2	165986735	165986735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggtttcctagagccccCacagaattgccaatgatctt	9	11	1	4	rs142517362		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165986735	A	A	165986735	2	1	9	1	0	0	0	0	0	0	0	1	14031	581	21	2		2	SCN3A	2	165986735	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	165986735	77212638	3451	11602											
SCN2A	6326	broad.mit.edu	37	chr2	166229797	166229797	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacttggtgccatcaaatcCctcagaacactaagagctct	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166229797	A	A	166229797	2	1	9	1	0	0	0	0	0	0	0	1	14029	610	22	2		2	SCN2A	2	166229797	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	243062	166229797	76969576	3452	11603											
SCN2A	6326	broad.mit.edu	37	chr2	166245376	166245376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattttgcctatgttaagaGggaagttgggatcgatgaca	12	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166245376	T	T	166245376	3	4	9	1	0	0	0	0	1	0	0	0	14029	1000	35	2	5258	2	SCN2A	2	166245376	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15579	166245376	76953997	3453	11604											
CSRNP3	80034	broad.mit.edu	37	chr2	166536239	166536239	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagtgcatcaaatcaccCgtggttgagacagtccctgt	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166536239	A	A	166536239	2	1	9	1	0	0	0	0	0	0	0	1	3999	639	23	1		1	CSRNP3	2	166536239	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	290863	166536239	76663134	3454	11605											
TTC21B	79809	broad.mit.edu	37	chr2	166769060	166769060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttgataagtgctttgccCattttgcttgccaatgttcc	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166769060	A	A	166769060	3	1	9	1	0	0	0	0	1	0	0	0	16814	594	21	2	1716	2	TTC21B	2	166769060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	232821	166769060	76430313	3455	11606											
TTC21B	79809	broad.mit.edu	37	chr2	166771885	166771885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcattagcaatggtaaccCgcacttcttcagatgttcca	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166771885	A	A	166771885	3	1	9	1	0	0	0	0	1	0	0	0	16814	652	23	1	2046	1	TTC21B	2	166771885	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2825	166771885	76427488	3456	11607											
SCN1A	6323	broad.mit.edu	37	chr2	166848334	166848334	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgaactgagttgcatcGggatcaaacttctcccaaac	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166848334	T	T	166848334	2	4	9	1	0	0	0	0	0	0	0	1	14027	1103	39	1		1	SCN1A	2	166848334	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76449	166848334	76351039	3457	11608											
SCN1A	6323	broad.mit.edu	37	chr2	166848516	166848516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattccaacagatgggttccCacagtctcccttaactgagc	7	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166848516	A	A	166848516	3	1	9	1	0	0	0	0	1	0	0	0	14027	594	21	2	764	2	SCN1A	2	166848516	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	182	166848516	76350857	3458	11609											
SCN1A	6323	broad.mit.edu	37	chr2	166848568	166848568	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttattagggtcacagtcGggtggcttactgttgagaat	12	6	1	1	rs149315236		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166848568	T	T	166848568	2	4	9	1	0	0	0	0	0	0	0	1	14027	1103	39	1		1	SCN1A	2	166848568	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	166848568	76350805	3459	11610											
SCN1A	6323	broad.mit.edu	37	chr2	166848723	166848723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggcaaagttggacatccCaaagatggcgtagatgaaca	11	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166848723	A	A	166848723	3	1	9	1	0	0	0	0	1	0	0	0	14027	594	21	2	971	2	SCN1A	2	166848723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	155	166848723	76350650	3460	11611											
SCN1A	6323	broad.mit.edu	37	chr2	166901796	166901796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcctgcctgctgcactGggctctctggaatgttctga	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166901796	T	T	166901796	2	4	9	1	0	0	0	0	0	0	0	1	14027	1335	47	2		2	SCN1A	2	166901796	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53073	166901796	76297577	3461	11612											
SCN9A	6335	broad.mit.edu	37	chr2	167055512	167055512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttttagtgtggttgtgatGggttcataggacactttgga	14	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167055512	T	T	167055512	2	4	9	1	0	0	0	0	0	0	0	1	14038	1335	47	2		2	SCN9A	2	167055512	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	153716	167055512	76143861	3462	11613											
SCN9A	6335	broad.mit.edu	37	chr2	167055776	167055776	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctataaactgggtcgcatcGggatcaaacttctcccaaac	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167055776	T	T	167055776	2	4	9	1	0	0	0	0	0	0	0	1	14038	1103	39	1		1	SCN9A	2	167055776	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	264	167055776	76143597	3463	11614											
SCN9A	6335	broad.mit.edu	37	chr2	167056049	167056049	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataggtgctagcaatccatcCcagccagcagaggttgtaat	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167056049	G	G	167056049	3	3	9	1	0	0	0	0	1	0	0	0	14038	624	22	4	870	4	SCN9A	2	167056049	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	273	167056049	76143324	3464	11615											
SCN9A	6335	broad.mit.edu	37	chr2	167085348	167085348	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaccgtgacccatctgtGgtgttaatacactcatagaa	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167085348	T	T	167085348	2	4	9	1	0	0	0	0	0	0	0	1	14038	1335	47	2		2	SCN9A	2	167085348	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29299	167085348	76114025	3465	11616											
SCN9A	6335	broad.mit.edu	37	chr2	167142814	167142814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctagcattctgcctcGggtgatacacatttagcaat	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167142814	T	T	167142814	1	4	9	0	1	0	0	0	0	0	0	0	14038	1131	39	1		1	SCN9A	2	167142814	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57466	167142814	76056559	3466	11617											
SCN9A	6335	broad.mit.edu	37	chr2	167142837	167142837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatacacatttagcaatttGggtggtacctgattgggggt	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167142837	T	T	167142837	1	4	9	0	1	0	0	0	0	0	0	0	14038	1363	47	2		2	SCN9A	2	167142837	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	167142837	76056536	3467	11618											
SCN9A	6335	broad.mit.edu	37	chr2	167142880	167142880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaacctcttttcatgtgctCgcctatgcccttcgacacca	5	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167142880	A	A	167142880	3	1	9	1	0	0	0	0	1	0	0	0	14038	884	31	3	4433	3	SCN9A	2	167142880	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	167142880	76056493	3468	11619											
SCN7A	6332	broad.mit.edu	37	chr2	167328893	167328893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggaaaatgatcctgccCagacacctcttgcaaagagt	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167328893	A	A	167328893	3	1	9	1	0	0	0	0	1	0	0	0	14036	595	21	2	4626	2	SCN7A	2	167328893	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	186013	167328893	75870480	3469	11620											
XIRP2	129446	broad.mit.edu	37	chr2	168067274	168067274	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctaataagcctgagagtGgatttgcagaagacagtgct	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168067274	T	T	168067274	4	4	9	1	0	0	0	0	0	1	0	0	17557	1349	47	2	602	2	XIRP2	2	168067274	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	738381	168067274	75132099	3470	11621											
XIRP2	129446	broad.mit.edu	37	chr2	168100039	168100039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttcattcagtggatgagGttcatttactgcagcttagg	11	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168100039	T	T	168100039	3	4	9	1	0	0	0	0	1	0	0	0	17557	1261	44	3	2167	3	XIRP2	2	168100039	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32765	168100039	75099334	3471	11622											
XIRP2	129446	broad.mit.edu	37	chr2	168105981	168105981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaacagaagaagtatttGgagcagttgcacttgcccca	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168105981	T	T	168105981	3	4	9	1	0	0	0	0	1	0	0	0	17557	1339	47	2	8109	2	XIRP2	2	168105981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5942	168105981	75093392	3472	11623											
XIRP2	129446	broad.mit.edu	37	chr2	168106081	168106081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacattaaatgaaacagacCacagctatgaaagtcataaa	5	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168106081	A	A	168106081	3	1	9	1	0	0	0	0	1	0	0	0	17557	594	21	2	8209	2	XIRP2	2	168106081	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100	168106081	75093292	3473	11624											
XIRP2	129446	broad.mit.edu	37	chr2	168107040	168107040	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaccgggaaataaaccCactagtcttgatgaaacatc	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168107040	A	A	168107040	2	1	9	1	0	0	0	0	0	0	0	1	17557	581	21	2		2	XIRP2	2	168107040	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	959	168107040	75092333	3474	11625											
STK39	27347	broad.mit.edu	37	chr2	168986025	168986025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggggattggttcctacaGggtcatgaaggctaatggca	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168986025	T	T	168986025	1	4	9	0	1	0	0	0	0	0	0	0	15423	1015	35	2		2	STK39	2	168986025	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	878985	168986025	74213348	3475	11626											
LASS6	253782	broad.mit.edu	37	chr2	169313056	169313056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggaggaggccaccttccCgcaggctgaggacctctatc	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169313056	A	A	169313056	3	1	9	1	0	0	0	0	1	0	0	0	8715	652	23	1	100	1	LASS6	2	169313056	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	327031	169313056	73886317	3476	11627											
LASS6	253782	broad.mit.edu	37	chr2	169487532	169487532	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttatgtatttacctacGgagtcagattcctgaaaaag	7	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169487532	T	T	169487532	4	4	9	1	0	0	0	0	0	1	0	0	8715	1117	39	1	459	1	LASS6	2	169487532	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	174476	169487532	73711841	3477	11628											
LASS6	253782	broad.mit.edu	37	chr2	169571586	169571586	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatgtcaacaatatggccCgagtaggaacgctggtcctt	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169571586	A	A	169571586	2	1	9	1	0	0	0	0	0	0	0	1	8715	644	23	1		1	LASS6	2	169571586	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84054	169571586	73627787	3478	11629											
ABCB11	8647	broad.mit.edu	37	chr2	169847387	169847387	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcatcagccaccacccCtgctttggcataggccttca	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169847387	A	A	169847387	3	1	9	1	0	0	0	0	1	0	0	0	42	681	24	2	3213	2	ABCB11	2	169847387	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	275801	169847387	73351986	3479	11630											
ABCB11	8647	broad.mit.edu	37	chr2	169847418	169847418	+	Silent	SNP	C	A	A													taggccttcagctcatagtcCgtaaacttggacacactcta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169847418	A	A	169847418	2	1	9	1	0	0	0	0	0	0	0	1	42	639	23	1		1	ABCB11	2	169847418	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	169847418	73351955	3480	11631	70	2									
ABCB11	8647	broad.mit.edu	37	chr2	169847427	169847427	+	Silent	SNP	G	T	T													agctcatagtccgtaaacttGgacacactctaaaaatcaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169847427	T	T	169847427	2	4	9	1	0	0	0	0	0	0	0	1	42	1335	47	2		2	ABCB11	2	169847427	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	169847427	73351946	3481	11632	70	2									
ABCB11	8647	broad.mit.edu	37	chr2	169869838	169869838	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgttagtccatacaatGgtgttattcacacatgcttt	7	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169869838	T	T	169869838	2	4	9	1	0	0	0	0	0	0	0	1	42	1335	47	2		2	ABCB11	2	169869838	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22411	169869838	73329535	3482	11633											
ABCB11	8647	broad.mit.edu	37	chr2	169869885	169869885	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatctggagttcttgtaactCaacgtcgtagtcaataaaaa	7	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169869885	A	A	169869885	4	1	9	1	0	0	0	0	0	1	0	0	42	835	29	3	3775	3	ABCB11	2	169869885	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	169869885	73329488	3483	11634											
DHRS9	10170	broad.mit.edu	37	chr2	169939948	169939948	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagtgaacctgtttggactCatcagtgtgacactaaatat	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169939948	A	A	169939948	2	1	9	1	0	0	0	0	0	0	0	1	4538	813	29	3		3	DHRS9	2	169939948	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70063	169939948	73259425	3484	11635											
DHRS9	10170	broad.mit.edu	37	chr2	169948302	169948302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgggttcttttcacagacGggacatgaaagcttttggtg	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169948302	T	T	169948302	3	4	9	1	0	0	0	0	1	0	0	0	4538	1116	39	1	585	1	DHRS9	2	169948302	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8354	169948302	73251071	3485	11636											
LRP2	4036	broad.mit.edu	37	chr2	170009407	170009407	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcggccggattcaaagttGgggatgtaggcacgtttgat	15	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170009407	T	T	170009407	2	4	9	1	0	0	0	0	0	0	0	1	9043	1335	47	2		2	LRP2	2	170009407	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	61105	170009407	73189966	3486	11637											
LRP2	4036	broad.mit.edu	37	chr2	170022531	170022531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcgattgttgtcacacCggaaacggtttggtgaatta	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170022531	A	A	170022531	3	1	9	1	0	0	0	0	1	0	0	0	9043	652	23	1	2370	1	LRP2	2	170022531	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13124	170022531	73176842	3487	11638											
LRP2	4036	broad.mit.edu	37	chr2	170030442	170030442	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttactgcattcttcaatGggctcatccgagtggtctcc	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170030442	T	T	170030442	2	4	9	1	0	0	0	0	0	0	0	1	9043	1335	47	2		2	LRP2	2	170030442	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7911	170030442	73168931	3488	11639											
LRP2	4036	broad.mit.edu	37	chr2	170034317	170034317	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatcacctactcaccaatGggctgcctatatggatggta	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170034317	T	T	170034317	2	4	9	1	0	0	0	0	0	0	0	1	9043	1335	47	2		2	LRP2	2	170034317	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3875	170034317	73165056	3489	11640											
LRP2	4036	broad.mit.edu	37	chr2	170034394	170034394	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtctgtctatttgatcCatcatatttgtttccctttt	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170034394	A	A	170034394	4	1	9	1	0	0	0	0	0	1	0	0	9043	603	21	2	3763	2	LRP2	2	170034394	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	170034394	73164979	3490	11641											
LRP2	4036	broad.mit.edu	37	chr2	170060518	170060518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagatatggctgcagcccCcattaaactgttcacaagga	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170060518	A	A	170060518	3	1	9	1	0	0	0	0	1	0	0	0	9043	623	22	2	6140	2	LRP2	2	170060518	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26124	170060518	73138855	3491	11642											
LRP2	4036	broad.mit.edu	37	chr2	170062576	170062576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcttggttttggaacgcGggctatcacagtgcggttag	14	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170062576	T	T	170062576	3	4	9	1	0	0	0	0	1	0	0	0	9043	1116	39	1	6614	1	LRP2	2	170062576	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2058	170062576	73136797	3492	11643											
LRP2	4036	broad.mit.edu	37	chr2	170094720	170094720	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacaatgtaagaaccattctCgaccaatgaatagatattgt	6	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170094720	A	A	170094720	4	1	9	1	0	0	0	0	0	1	0	0	9043	893	31	3	9792	3	LRP2	2	170094720	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32144	170094720	73104653	3493	11644											
LRP2	4036	broad.mit.edu	37	chr2	170096090	170096090	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatgtagcctgtatcacacGagcaccggaaagaacctctc	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170096090	T	T	170096090	4	4	9	1	0	0	0	0	0	1	0	0	9043	1059	37	3	9942	3	LRP2	2	170096090	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1370	170096090	73103283	3494	11645											
LRP2	4036	broad.mit.edu	37	chr2	170100044	170100044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgaatctaatgtcatcCgaaaacaaaaccaacaagtt	5	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170100044	A	A	170100044	1	1	9	0	1	0	0	0	0	0	0	0	9043	667	23	1		1	LRP2	2	170100044	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3954	170100044	73099329	3495	11646											
LRP2	4036	broad.mit.edu	37	chr2	170112639	170112639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagatggcaagtccaaacGgatgtgtcatctgctctata	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170112639	T	T	170112639	3	4	9	1	0	0	0	0	1	0	0	0	9043	1116	39	1	11464	1	LRP2	2	170112639	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12595	170112639	73086734	3496	11647											
LRP2	4036	broad.mit.edu	37	chr2	170129355	170129355	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggagctggtccagttcaaGagtagcagttagtctagtta	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170129355	T	T	170129355	1	4	9	0	1	0	0	0	0	0	0	0	9043	957	33	3		3	LRP2	2	170129355	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16716	170129355	73070018	3497	11648											
LRP2	4036	broad.mit.edu	37	chr2	170129527	170129527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatctgttctgtggctgaGgacacagacctgctcacagc	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170129527	T	T	170129527	3	4	9	1	0	0	0	0	1	0	0	0	9043	1000	35	2	12201	2	LRP2	2	170129527	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	172	170129527	73069846	3498	11649											
LRP2	4036	broad.mit.edu	37	chr2	170139461	170139461	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaggtgacggccaggtcGgctttcacacttctggtcac	12	13	3	1	rs80338744		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170139461	T	T	170139461	2	4	9	1	0	0	0	0	0	0	0	1	9043	1124	39	1		1	LRP2	2	170139461	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9934	170139461	73059912	3499	11650											
LRP2	4036	broad.mit.edu	37	chr2	170145598	170145598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggacaaaaacacgctcctCcatacggcgtctcatggcac	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170145598	A	A	170145598	3	1	9	1	0	0	0	0	1	0	0	0	9043	855	30	3	13271	3	LRP2	2	170145598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6137	170145598	73053775	3500	11651											
LRP2	4036	broad.mit.edu	37	chr2	170147449	170147449	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatggagatgcatcgtccCgactctgggcaagaccattc	10	11	1	2	rs146048301		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170147449	A	A	170147449	2	1	9	1	0	0	0	0	0	0	0	1	9043	639	23	1		1	LRP2	2	170147449	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1851	170147449	73051924	3501	11652											
KBTBD10	10324	broad.mit.edu	37	chr2	170343491	170343491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgttgcttctaatactGggccagaagttccatatcca	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170343491	T	T	170343491	1	4	9	0	1	0	0	0	0	0	0	0	8060	1363	47	2		2	KBTBD10	2	170343491	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	196042	170343491	72855882	3502	11653											
KBTBD10	10324	broad.mit.edu	37	chr2	170344551	170344551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taacaaaatgtaacagtactCgttttgaatttatatttaca	4	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170344551	A	A	170344551	3	1	9	1	0	0	0	0	1	0	0	0	8060	884	31	3		3	KBTBD10	2	170344551	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1060	170344551	72854822	3503	11654											
KBTBD10	10324	broad.mit.edu	37	chr2	170367248	170367248	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtggcttatgaccccacGgaaaatgaatgctaccttac	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170367248	T	T	170367248	2	4	9	1	0	0	0	0	0	0	0	1	8060	1103	39	1		1	KBTBD10	2	170367248	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22697	170367248	72832125	3504	11655											
KBTBD10	10324	broad.mit.edu	37	chr2	170371268	170371268	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcatgatattcctgttccCtaagcattcaagtatatgcg	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170371268	A	A	170371268	1	1	9	0	1	0	0	0	0	0	0	0	8060	696	24	2		2	KBTBD10	2	170371268	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4020	170371268	72828105	3505	11656											
FASTKD1	79675	broad.mit.edu	37	chr2	170387059	170387059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtacagctagtgtctctGggctttttagaggctgaatt	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170387059	T	T	170387059	1	4	9	0	1	0	0	0	0	0	0	0	5742	1363	47	2		2	FASTKD1	2	170387059	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15791	170387059	72812314	3506	11657											
FASTKD1	79675	broad.mit.edu	37	chr2	170394547	170394547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatattgttgacagaagcGgtcatgaaaccatggaatct	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170394547	T	T	170394547	3	4	9	1	0	0	0	0	1	0	0	0	5742	1116	39	1	513	1	FASTKD1	2	170394547	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7488	170394547	72804826	3507	11658											
FASTKD1	79675	broad.mit.edu	37	chr2	170394558	170394558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagaagcggtcatgaaacCatggaatctgaaactcaggg	12	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170394558	A	A	170394558	3	1	9	1	0	0	0	0	1	0	0	0	5742	595	21	2	524	2	FASTKD1	2	170394558	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	170394558	72804815	3508	11659											
PPIG	9360	broad.mit.edu	37	chr2	170463580	170463580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcacctttgaggagcttaCtgagagttataagagtatgt	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170463580	A	A	170463580	1	1	9	0	1	0	0	0	0	0	0	0	12425	580	20	3		3	PPIG	2	170463580	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	69022	170463580	72735793	3509	11660											
PPIG	9360	broad.mit.edu	37	chr2	170471181	170471181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagatgcagctagcaaacCgtttgcggaggtacggatac	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170471181	A	A	170471181	3	1	9	1	0	0	0	0	1	0	0	0	12425	652	23	1	520	1	PPIG	2	170471181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7601	170471181	72728192	3510	11661											
PPIG	9360	broad.mit.edu	37	chr2	170487393	170487393	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgattcctctgattcCgaaagtgctactgaagagaa	8	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170487393	A	A	170487393	2	1	9	1	0	0	0	0	0	0	0	1	12425	639	23	1		1	PPIG	2	170487393	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16212	170487393	72711980	3511	11662											
PPIG	9360	broad.mit.edu	37	chr2	170493015	170493015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaatgtatctgagagtcCaaacagaaaaaatgaaaagg	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170493015	A	A	170493015	3	1	9	1	0	0	0	0	1	0	0	0	12425	594	21	2	1293	2	PPIG	2	170493015	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5622	170493015	72706358	3512	11663											
C2orf77	129881	broad.mit.edu	37	chr2	170502497	170502497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccacaaacactggtccacGgccacctccaggtccttcct	7	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170502497	T	T	170502497	3	4	9	1	0	0	0	0	1	0	0	0	2216	1116	39	1	149	1	C2orf77	2	170502497	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9482	170502497	72696876	3513	11664											
METTL5	29081	broad.mit.edu	37	chr2	170668343	170668343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttttaaaaggaaaacCgaattaggtccacttcaatg	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170668343	A	A	170668343	3	1	9	1	0	0	0	0	1	0	0	0	9596	652	23	1	16	1	METTL5	2	170668343	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	165846	170668343	72531030	3514	11665											
UBR3	130507	broad.mit.edu	37	chr2	170871903	170871903	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actaaatactgctaaatttaAaaaaaattctgtcatttttg	3	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170871903	C	C	170871903	1	2	9	0	1	0	0	0	0	0	0	0	17029	29	1	5		5	UBR3	2	170871903	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	203560	170871903	72327470	3515	11666											
MYO3B	140469	broad.mit.edu	37	chr2	171073862	171073862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaccagtacacgtctgcGgagaaacacatctgttggca	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171073862	T	T	171073862	3	4	9	1	0	0	0	0	1	0	0	0	10171	1116	39	1	582	1	MYO3B	2	171073862	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	201959	171073862	72125511	3516	11667											
MYO3B	140469	broad.mit.edu	37	chr2	171260792	171260792	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcattgatgctgtaccCgtggaatatgaggacaaccg	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171260792	A	A	171260792	2	1	9	1	0	0	0	0	0	0	0	1	10171	639	23	1		1	MYO3B	2	171260792	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	186930	171260792	71938581	3517	11668											
MYO3B	140469	broad.mit.edu	37	chr2	171508213	171508213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaaaatgctgagtagccCtgaggacaccatgtactata	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171508213	A	A	171508213	3	1	9	1	0	0	0	0	1	0	0	0	10171	681	24	2	4065	2	MYO3B	2	171508213	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	247421	171508213	71691160	3518	11669											
GAD1	2571	broad.mit.edu	37	chr2	171686098	171686098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacagcgaccgggatgccCgcttccggcgcacagagact	12	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171686098	A	A	171686098	3	1	9	1	0	0	0	0	1	0	0	0	6239	652	23	1	269	1	GAD1	2	171686098	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	177885	171686098	71513275	3519	11670											
GAD1	2571	broad.mit.edu	37	chr2	171710464	171710464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgtctcctacgacaccGgggacaaggcaattcagtgt	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171710464	T	T	171710464	3	4	9	1	0	0	0	0	1	0	0	0	6239	1116	39	1	1436	1	GAD1	2	171710464	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24366	171710464	71488909	3520	11671											
TLK1	9874	broad.mit.edu	37	chr2	171902846	171902846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcctttcaatatcttccCtttgctgattcacccattct	3	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171902846	A	A	171902846	3	1	9	1	0	0	0	0	1	0	0	0	16066	681	24	2	1337	2	TLK1	2	171902846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	192382	171902846	71296527	3521	11672											
TLK1	9874	broad.mit.edu	37	chr2	171939238	171939238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaatactaattaaaacGgtgattccagcttttacttt	4	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171939238	T	T	171939238	1	4	9	0	1	0	0	0	0	0	0	0	16066	1131	39	1		1	TLK1	2	171939238	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36392	171939238	71260135	3522	11673											
DCAF17	80067	broad.mit.edu	37	chr2	172305280	172305280	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgtatatcagcaactacGggaaaaatccttgagaaaat	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172305280	T	T	172305280	2	4	9	1	0	0	0	0	0	0	0	1	4302	1103	39	1		1	DCAF17	2	172305280	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	366042	172305280	70894093	3523	11674											
DCAF17	80067	broad.mit.edu	37	chr2	172314434	172314434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgaacattcagaggattGgacttccagtcttttctcag	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172314434	T	T	172314434	1	4	9	0	1	0	0	0	0	0	0	0	4302	1363	47	2		2	DCAF17	2	172314434	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9154	172314434	70884939	3524	11675											
DCAF17	80067	broad.mit.edu	37	chr2	172314487	172314487	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccccccgccagatttttGggaacgttacagatgctacc	8	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172314487	T	T	172314487	3	4	9	1	0	0	0	0	1	0	0	0	4302	1348	47	2	660	2	DCAF17	2	172314487	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	172314487	70884886	3525	11676											
DCAF17	80067	broad.mit.edu	37	chr2	172314573	172314573	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactctatagcttccaaacCatcgctgaacaggtagagaa	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172314573	A	A	172314573	2	1	9	1	0	0	0	0	0	0	0	1	4302	581	21	2		2	DCAF17	2	172314573	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	172314573	70884800	3526	11677											
CYBRD1	79901	broad.mit.edu	37	chr2	172398266	172398266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtacagtctgcacagctGggttggactgatagctgtca	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172398266	T	T	172398266	3	4	9	1	0	0	0	0	1	0	0	0	4167	1357	47	2	371	2	CYBRD1	2	172398266	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83693	172398266	70801107	3527	11678											
SLC25A12	8604	broad.mit.edu	37	chr2	172666180	172666180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctggtaaatttgtccCgaacaaaatcattaacctaa	4	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172666180	A	A	172666180	3	1	9	1	0	0	0	0	1	0	0	0	14588	652	23	1	819	1	SLC25A12	2	172666180	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	267914	172666180	70533193	3528	11679											
HAT1	8520	broad.mit.edu	37	chr2	172809420	172809420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactgcttttggttacaaGggtctaaagatcctgttata	9	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172809420	T	T	172809420	3	4	9	1	0	0	0	0	1	0	0	0	7030	991	35	2	224	2	HAT1	2	172809420	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	143240	172809420	70389953	3529	11680											
HAT1	8520	broad.mit.edu	37	chr2	172823010	172823010	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctataattactatgtgtaccCagacaaaacccggccacgtg	7	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172823010	G	G	172823010	3	3	9	1	0	0	0	0	1	0	0	0	7030	594	21	4	718	4	HAT1	2	172823010	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13590	172823010	70376363	3530	11681											
HAT1	8520	broad.mit.edu	37	chr2	172844219	172844219	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaactgacatgagtgatgcCgaacaatacagaagctacag	10	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172844219	A	A	172844219	2	1	9	1	0	0	0	0	0	0	0	1	7030	639	23	1		1	HAT1	2	172844219	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21209	172844219	70355154	3531	11682											
MAP1D	254042	broad.mit.edu	37	chr2	172926313	172926313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagaaatttcttttttcGgagacaaagagatatttcac	7	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172926313	T	T	172926313	3	4	9	1	0	0	0	0	1	0	0	0	9321	1116	39	1	134	1	MAP1D	2	172926313	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82094	172926313	70273060	3532	11683											
DLX1	1745	broad.mit.edu	37	chr2	172952654	172952654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatctctgctgttctgcGgtcccttttttcctccctgt	6	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172952654	T	T	172952654	1	4	9	0	1	0	0	0	0	0	0	0	4610	1131	39	1		1	DLX1	2	172952654	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26341	172952654	70246719	3533	11684											
DLX1	1745	broad.mit.edu	37	chr2	172952698	172952698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggtaggctcagtggtccCagcctgagtcacgttgttgt	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172952698	A	A	172952698	1	1	9	0	1	0	0	0	0	0	0	0	4610	609	21	2		2	DLX1	2	172952698	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	172952698	70246675	3534	11685											
DLX1	1745	broad.mit.edu	37	chr2	172952993	172952993	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacttatgtgaggttgccCgcccgtctccttcttgtctc	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172952993	A	A	172952993	1	1	9	0	1	0	0	0	0	0	0	0	4610	667	23	1		1	DLX1	2	172952993	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	295	172952993	70246380	3535	11686											
ITGA6	3655	broad.mit.edu	37	chr2	173340343	173340343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatattgcagttggagctcCgtatgatgacttgggaaagg	14	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173340343	A	A	173340343	3	1	9	1	0	0	0	0	1	0	0	0	7950	652	23	1	1229	1	ITGA6	2	173340343	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	387350	173340343	69859030	3536	11687											
ITGA6	3655	broad.mit.edu	37	chr2	173341103	173341103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataacctaatgtccattcGgatgccctgtgtatttcagg	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173341103	T	T	173341103	1	4	9	0	1	0	0	0	0	0	0	0	7950	1131	39	1		1	ITGA6	2	173341103	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	760	173341103	69858270	3537	11688											
ITGA6	3655	broad.mit.edu	37	chr2	173344289	173344289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtgctgggcagctaaGgatgctctctagtatgtgaa	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173344289	T	T	173344289	1	4	9	0	1	0	0	0	0	0	0	0	7950	1015	35	2		2	ITGA6	2	173344289	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3186	173344289	69855084	3538	11689											
ITGA6	3655	broad.mit.edu	37	chr2	173344373	173344373	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttttgtcttcagatccCggcctgtgattaatattcag	7	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173344373	A	A	173344373	2	1	9	1	0	0	0	0	0	0	0	1	7950	643	23	1		1	ITGA6	2	173344373	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	173344373	69855000	3539	11690											
ITGA6	3655	broad.mit.edu	37	chr2	173355777	173355777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaactcaagaaagaaacGggaaattactgaaaaacaga	7	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173355777	T	T	173355777	3	4	9	1	0	0	0	0	1	0	0	0	7950	1116	39	1	2787	1	ITGA6	2	173355777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11404	173355777	69843596	3540	11691											
ITGA6	3655	broad.mit.edu	37	chr2	173355848	173355848	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaagaaaataccagactCttgtaagtatttttcaagag	7	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173355848	A	A	173355848	3	1	9	1	0	0	0	0	1	0	0	0	7950	913	32	3	2858	3	ITGA6	2	173355848	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71	173355848	69843525	3541	11692											
RAPGEF4	11069	broad.mit.edu	37	chr2	173825987	173825987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattctaaaggctgtgcccCgctcatattcatgtttagtg	8	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173825987	A	A	173825987	1	1	9	0	1	0	0	0	0	0	0	0	13154	667	23	1		1	RAPGEF4	2	173825987	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	470139	173825987	69373386	3542	11693											
RAPGEF4	11069	broad.mit.edu	37	chr2	173861298	173861298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtatacacatagaacCgtttgcatgtccattaaatc	6	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173861298	A	A	173861298	1	1	9	0	1	0	0	0	0	0	0	0	13154	667	23	1		1	RAPGEF4	2	173861298	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35311	173861298	69338075	3543	11694											
RAPGEF4	11069	broad.mit.edu	37	chr2	173881229	173881229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcaaaaagtcctttgccCacaagaaaggttaaagctgg	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173881229	A	A	173881229	1	1	9	0	1	0	0	0	0	0	0	0	13154	609	21	2		2	RAPGEF4	2	173881229	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19931	173881229	69318144	3544	11695											
CDCA7	83879	broad.mit.edu	37	chr2	174227987	174227987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgggaaggctgtaggaccCgcagccagtgcaggcactct	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174227987	A	A	174227987	3	1	9	1	0	0	0	0	1	0	0	0	3120	652	23	1	432	1	CDCA7	2	174227987	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	346758	174227987	68971386	3545	11696											
SP3	6670	broad.mit.edu	37	chr2	174820360	174820360	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtgtttatcaaatgtcCgtcggcattaatgcctgcag	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174820360	A	A	174820360	4	1	9	1	0	0	0	0	0	1	0	0	15079	661	23	1	1481	1	SP3	2	174820360	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	592373	174820360	68379013	3546	11697											
SP3	6670	broad.mit.edu	37	chr2	174820400	174820400	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcattgtctgagaactgccCgagagtcccaaagaatctag	10	10	3	3	rs146827142		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174820400	A	A	174820400	2	1	9	1	0	0	0	0	0	0	0	1	15079	639	23	1		1	SP3	2	174820400	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	174820400	68378973	3547	11698											
CIR1	9541	broad.mit.edu	37	chr2	175243704	175243704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagaaagaccaaacaaaGgacattctcgatctgtgttg	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175243704	T	T	175243704	3	4	9	1	0	0	0	0	1	0	0	0	3463	1000	35	2	937	2	CIR1	2	175243704	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	423304	175243704	67955669	3548	11699											
CIR1	9541	broad.mit.edu	37	chr2	175246416	175246416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaagaaaaaaagaaacGgaagaagataagtacctttt	8	3	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175246416	T	T	175246416	1	4	9	0	1	0	0	0	0	0	0	0	3463	1131	39	1		1	CIR1	2	175246416	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2712	175246416	67952957	3549	11700											
CIR1	9541	broad.mit.edu	37	chr2	175246450	175246450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttttttagctcctggtgGggcttcatacatgaaattaa	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175246450	T	T	175246450	3	4	9	1	0	0	0	0	1	0	0	0	3463	1232	43	2	1161	2	CIR1	2	175246450	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	175246450	67952923	3550	11701											
GPR155	151556	broad.mit.edu	37	chr2	175311383	175311383	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacacagcaacacatgtcGggtcagttgctggtctccac	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175311383	T	T	175311383	2	4	9	1	0	0	0	0	0	0	0	1	6725	1124	39	1		1	GPR155	2	175311383	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	64933	175311383	67887990	3551	11702											
GPR155	151556	broad.mit.edu	37	chr2	175311446	175311446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctaatatgcagctctGggagttacagcgactcacac	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175311446	T	T	175311446	3	4	9	1	0	0	0	0	1	0	0	0	6725	1357	47	2	726	2	GPR155	2	175311446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	175311446	67887927	3552	11703											
GPR155	151556	broad.mit.edu	37	chr2	175337900	175337900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaccataaatactattGggttctgtaatacacgcagg	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175337900	T	T	175337900	3	4	9	1	0	0	0	0	1	0	0	0	6725	1348	47	2	2015	2	GPR155	2	175337900	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26454	175337900	67861473	3553	11704											
GPR155	151556	broad.mit.edu	37	chr2	175338003	175338003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttcacagaaaataaaccCtatagggtttaacatcataa	5	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175338003	A	A	175338003	3	1	9	1	0	0	0	0	1	0	0	0	6725	681	24	2	2118	2	GPR155	2	175338003	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	175338003	67861370	3554	11705											
GPR155	151556	broad.mit.edu	37	chr2	175346230	175346230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaattaacttacctataGggtatcccaatgcaaagtca	5	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175346230	T	T	175346230	3	4	9	1	0	0	0	0	1	0	0	0	6725	1000	35	2	2217	2	GPR155	2	175346230	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8227	175346230	67853143	3555	11706											
WIPF1	7456	broad.mit.edu	37	chr2	175446014	175446014	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaactgttcctctccatGgtagatagcctttttttact	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175446014	T	T	175446014	1	4	9	0	1	0	0	0	0	0	0	0	17494	1363	47	2		2	WIPF1	2	175446014	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	99784	175446014	67753359	3556	11707											
CHN1	1123	broad.mit.edu	37	chr2	175677131	175677131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggtcacagctgtacacCtttttgacatgcttcaagtc	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175677131	A	A	175677131	3	1	9	1	0	0	0	0	1	0	0	0	3393	680	24	2	607	2	CHN1	2	175677131	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	231117	175677131	67522242	3557	11708											
HOXD11	3237	broad.mit.edu	37	chr2	176973755	176973755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagacttcaactctctcGgatgctcaacctcactgacc	6	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176973755	T	T	176973755	3	4	9	1	0	0	0	0	1	0	0	0	7387	1116	39	1	908	1	HOXD11	2	176973755	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1296624	176973755	66225618	3558	11709											
HOXD8	3234	broad.mit.edu	37	chr2	176995470	176995470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccacctcccccctgcggcGggattgcctgtcacggggag	14	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176995470	T	T	176995470	3	4	9	1	0	0	0	0	1	0	0	0	7392	1116	39	1	378	1	HOXD8	2	176995470	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21715	176995470	66203903	3559	11710											
HOXD8	3234	broad.mit.edu	37	chr2	176996253	176996253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaacaaggacaaatttccCgtttcccggcaggaggtgaa	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176996253	A	A	176996253	2	1	9	1	0	0	0	0	0	0	0	1	7392	639	23	1		1	HOXD8	2	176996253	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	783	176996253	66203120	3560	11711											
HOXD3	3232	broad.mit.edu	37	chr2	177034271	177034271	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgcctgccaagaagccCaaaggtgggcccaatgcttc	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177034271	A	A	177034271	2	1	9	1	0	0	0	0	0	0	0	1	7390	581	21	2		2	HOXD3	2	177034271	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38018	177034271	66165102	3561	11712											
HOXD1	3231	broad.mit.edu	37	chr2	177054721	177054721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaatctggttccagaacCgcaggatgaaacagaagaaa	9	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177054721	A	A	177054721	3	1	9	1	0	0	0	0	1	0	0	0	7385	652	23	1	844	1	HOXD1	2	177054721	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20450	177054721	66144652	3562	11713											
MTX2	10651	broad.mit.edu	37	chr2	177193039	177193039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggccattctcttagtgatGggctggaggaagtccaaaaa	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177193039	T	T	177193039	3	4	9	1	0	0	0	0	1	0	0	0	10062	1348	47	2	326	2	MTX2	2	177193039	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138318	177193039	66006334	3563	11714											
MTX2	10651	broad.mit.edu	37	chr2	177195370	177195370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagactgggaacacaacCgtatttcttcaataagcagt	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177195370	A	A	177195370	3	1	9	1	0	0	0	0	1	0	0	0	10062	652	23	1	636	1	MTX2	2	177195370	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2331	177195370	66004003	3564	11715											
AGPS	8540	broad.mit.edu	37	chr2	178370235	178370235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgttctttaattacagtGggttggcagctggagaagat	13	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178370235	T	T	178370235	3	4	9	1	0	0	0	0	1	0	0	0	394	1362	47	2	1535	2	AGPS	2	178370235	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1174865	178370235	64829138	3565	11716											
AGPS	8540	broad.mit.edu	37	chr2	178386078	178386078	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattagtgacccactgacCgtatttgaacaaactgaggt	10	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178386078	A	A	178386078	2	1	9	1	0	0	0	0	0	0	0	1	394	639	23	1		1	AGPS	2	178386078	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15843	178386078	64813295	3566	11717											
AGPS	8540	broad.mit.edu	37	chr2	178402890	178402890	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaggaatatgtggacccCaataacatctttggaaacag	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178402890	A	A	178402890	2	1	9	1	0	0	0	0	0	0	0	1	394	581	21	2		2	AGPS	2	178402890	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16812	178402890	64796483	3567	11718											
TTC30B	150737	broad.mit.edu	37	chr2	178416492	178416492	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgccaggtcaaaatactCatatttacagtagagcagca	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178416492	A	A	178416492	4	1	9	1	0	0	0	0	0	1	0	0	16825	835	29	3	1001	3	TTC30B	2	178416492	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13602	178416492	64782881	3568	11719											
TTC30A	92104	broad.mit.edu	37	chr2	178481581	178481581	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccataaagttcacagtgtcCtaaaaactggacacattctt	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178481581	A	A	178481581	4	1	9	1	0	0	0	0	0	1	0	0	16824	690	24	2	152	2	TTC30A	2	178481581	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65089	178481581	64717792	3569	11720											
TTC30A	92104	broad.mit.edu	37	chr2	178481823	178481823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtacattttccgatttGggtcatcataagagagctgc	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178481823	T	T	178481823	3	4	9	1	0	0	0	0	1	0	0	0	16824	1348	47	2	394	2	TTC30A	2	178481823	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	242	178481823	64717550	3570	11721											
TTC30A	92104	broad.mit.edu	37	chr2	178481865	178481865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctccttttcaatcttcCtcatcaactcctctgcttct	1	17	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178481865	A	A	178481865	3	1	9	1	0	0	0	0	1	0	0	0	16824	681	24	2	436	2	TTC30A	2	178481865	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	178481865	64717508	3571	11722											
TTC30A	92104	broad.mit.edu	37	chr2	178482280	178482280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgctcagtcagcatccCtgctagcccatcaagcttaa	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178482280	A	A	178482280	3	1	9	1	0	0	0	0	1	0	0	0	16824	681	24	2	851	2	TTC30A	2	178482280	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	415	178482280	64717093	3572	11723											
PDE11A	50940	broad.mit.edu	37	chr2	178534252	178534252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgagctctaatctctccCgatctccttgttcgaagaac	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178534252	A	A	178534252	3	1	9	1	0	0	0	0	1	0	0	0	11725	652	23	1	282	1	PDE11A	2	178534252	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51972	178534252	64665121	3573	11724											
PDE11A	50940	broad.mit.edu	37	chr2	178862661	178862661	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctccaactgtatgtcaaGaccttccactgcggtagtca	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178862661	T	T	178862661	1	4	9	0	1	0	0	0	0	0	0	0	11725	957	33	3		3	PDE11A	2	178862661	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	328409	178862661	64336712	3574	11725											
PDE11A	50940	broad.mit.edu	37	chr2	178936704	178936704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccggagaagtgccctcCgtcgtacactactcaggggt	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178936704	A	A	178936704	3	1	9	1	0	0	0	0	1	0	0	0	11725	652	23	1	2420	1	PDE11A	2	178936704	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74043	178936704	64262669	3575	11726											
OSBPL6	114880	broad.mit.edu	37	chr2	179259110	179259110	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaggaactccagagatctCggagacgatatatggaagaa	12	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179259110	A	A	179259110	2	1	9	1	0	0	0	0	0	0	0	1	11375	875	31	3		3	OSBPL6	2	179259110	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	322406	179259110	63940263	3576	11727											
DFNB59	494513	broad.mit.edu	37	chr2	179326020	179326020	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgaaaaatgaatacacCgtgttggtgttttaggtgca	10	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179326020	A	A	179326020	1	1	9	0	1	0	0	0	0	0	0	0	4496	667	23	1		1	DFNB59	2	179326020	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	66910	179326020	63873353	3577	11728											
FKBP7	51661	broad.mit.edu	37	chr2	179343131	179343131	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctattttcacttcttcGgtgctctcctctttcttttg	4	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179343131	T	T	179343131	2	4	9	1	0	0	0	0	0	0	0	1	5970	1103	39	1		1	FKBP7	2	179343131	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17111	179343131	63856242	3578	11729											
TTN	7273	broad.mit.edu	37	chr2	179395886	179395886	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggtaccggctcaccatcGgtgtcacaagaaaaccttgc	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179395886	T	T	179395886	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179395886	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	52755	179395886	63803487	3579	11730											
TTN	7273	broad.mit.edu	37	chr2	179398126	179398126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataatttcaatgttaggccCgagggacagtggctgaccat	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179398126	A	A	179398126	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	4783	1	TTN	2	179398126	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2240	179398126	63801247	3580	11731											
TTN	7273	broad.mit.edu	37	chr2	179400060	179400060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttattttcagctattaccCggaactggtaacttgttttt	6	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179400060	A	A	179400060	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	6717	1	TTN	2	179400060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1934	179400060	63799313	3581	11732											
TTN	7273	broad.mit.edu	37	chr2	179404292	179404292	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttaggcacttctcgtctctCgaggatgtagcctaagatgt	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179404292	A	A	179404292	4	1	9	1	0	0	0	0	0	1	0	0	16861	893	31	3	9523	3	TTN	2	179404292	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4232	179404292	63795081	3582	11733											
TTN	7273	broad.mit.edu	37	chr2	179407458	179407458	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattcaagtgtgtattctcCagtatctctgatagtggttt	8	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179407458	A	A	179407458	4	1	9	1	0	0	0	0	0	1	0	0	16861	603	21	2	10916	2	TTN	2	179407458	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3166	179407458	63791915	3583	11734											
TTN	7273	broad.mit.edu	37	chr2	179407625	179407625	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctctactggtctgccagctGggacatggatggtcttctga	13	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179407625	C	C	179407625	3	2	9	1	0	0	0	0	1	0	0	0	16861	1348	47	4	11083	4	TTN	2	179407625	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	167	179407625	63791748	3584	11735											
TTN	7273	broad.mit.edu	37	chr2	179407787	179407787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttggctatttGgtacatacctctgaggtctt	7	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179407787	T	T	179407787	1	4	9	0	1	0	0	0	0	0	0	0	16861	1363	47	2		2	TTN	2	179407787	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	162	179407787	63791586	3585	11736											
TTN	7273	broad.mit.edu	37	chr2	179407818	179407818	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggtcttgtacagtcacGgctgtgacagtctctcttgg	12	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179407818	T	T	179407818	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179407818	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	179407818	63791555	3586	11737											
TTN	7273	broad.mit.edu	37	chr2	179408740	179408740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgctccacgttatgacaGgaggtggtcttccagataca	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179408740	T	T	179408740	3	4	9	1	0	0	0	0	1	0	0	0	16861	1000	35	2	11916	2	TTN	2	179408740	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	922	179408740	63790633	3587	11738											
TTN	7273	broad.mit.edu	37	chr2	179409010	179409010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacggcagcaactctgaaGgaatatttctggcccatttt	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179409010	T	T	179409010	2	4	9	1	0	0	0	0	0	0	0	1	16861	987	35	2		2	TTN	2	179409010	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	270	179409010	63790363	3588	11739											
TTN	7273	broad.mit.edu	37	chr2	179411049	179411049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttgatcacagcagttgctCgtttgccagtatactgcaaa	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179411049	A	A	179411049	3	1	9	1	0	0	0	0	1	0	0	0	16861	884	31	3	13054	3	TTN	2	179411049	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2039	179411049	63788324	3589	11740											
TTN	7273	broad.mit.edu	37	chr2	179411888	179411888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactttgttttctttcaccCaaagaattgtattacgttct	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179411888	A	A	179411888	3	1	9	1	0	0	0	0	1	0	0	0	16861	595	21	2	13707	2	TTN	2	179411888	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	839	179411888	63787485	3590	11741											
TTN	7273	broad.mit.edu	37	chr2	179412922	179412922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcaggtagccagtgatcCggctgcctccatcgtggtca	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179412922	A	A	179412922	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	14644	1	TTN	2	179412922	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1034	179412922	63786451	3591	11742											
TTN	7273	broad.mit.edu	37	chr2	179414794	179414794	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtatacaccacgatggtcccGagtagcatctctaacaaata	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179414794	T	T	179414794	2	4	9	1	0	0	0	0	0	0	0	1	16861	1057	37	3		3	TTN	2	179414794	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1872	179414794	63784579	3592	11743											
TTN	7273	broad.mit.edu	37	chr2	179414895	179414895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catctttgaaccaagttactCgaggcactggtcttccttgt	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179414895	A	A	179414895	3	1	9	1	0	0	0	0	1	0	0	0	16861	884	31	3	16413	3	TTN	2	179414895	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101	179414895	63784478	3593	11744											
TTN	7273	broad.mit.edu	37	chr2	179416389	179416389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctaaggtaaatttgcttGggtcactaggtgagcttagg	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179416389	T	T	179416389	3	4	9	1	0	0	0	0	1	0	0	0	16861	1348	47	2	16853	2	TTN	2	179416389	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1494	179416389	63782984	3594	11745											
TTN	7273	broad.mit.edu	37	chr2	179418773	179418773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttttgtctggtgtcacGgatagtctcttttagtactt	8	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179418773	T	T	179418773	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	19034	1	TTN	2	179418773	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2384	179418773	63780600	3595	11746											
TTN	7273	broad.mit.edu	37	chr2	179419012	179419012	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaattatacctttgatgttCgcattctttccaagaacatt	4	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179419012	A	A	179419012	1	1	9	0	1	0	0	0	0	0	0	0	16861	899	31	3		3	TTN	2	179419012	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	239	179419012	63780361	3596	11747											
TTN	7273	broad.mit.edu	37	chr2	179422364	179422364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggatctttgaaaagttGgacaacttactgtatggtag	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179422364	T	T	179422364	1	4	9	0	1	0	0	0	0	0	0	0	16861	1363	47	2		2	TTN	2	179422364	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3352	179422364	63777009	3597	11748											
TTN	7273	broad.mit.edu	37	chr2	179426110	179426110	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggagggtcacaaggatctCttgcagggactggttcacaa	13	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179426110	A	A	179426110	3	1	9	1	0	0	0	0	1	0	0	0	16861	913	32	3	23378	3	TTN	2	179426110	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3746	179426110	63773263	3598	11749											
TTN	7273	broad.mit.edu	37	chr2	179427744	179427744	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttcccatttaacttcGggttctggtcgacctttgat	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179427744	T	T	179427744	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179427744	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1634	179427744	63771629	3599	11750											
TTN	7273	broad.mit.edu	37	chr2	179427858	179427858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtggctctatcctctcCtgagcaaccactgagccagg	10	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179427858	A	A	179427858	3	1	9	1	0	0	0	0	1	0	0	0	16861	680	24	2	25126	2	TTN	2	179427858	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	179427858	63771515	3600	11751											
TTN	7273	broad.mit.edu	37	chr2	179428254	179428254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcataggaatggccttcGgtaagaccagttaccctgag	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179428254	T	T	179428254	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179428254	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	396	179428254	63771119	3601	11752											
TTN	7273	broad.mit.edu	37	chr2	179428837	179428837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattgtcctccatcagtcCgtatacagtctttgacaaca	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179428837	A	A	179428837	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	26105	1	TTN	2	179428837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	583	179428837	63770536	3602	11753											
TTN	7273	broad.mit.edu	37	chr2	179428945	179428945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgaccaaacaacatcaGgtataggtttgccacggatg	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179428945	T	T	179428945	3	4	9	1	0	0	0	0	1	0	0	0	16861	1000	35	2	26213	2	TTN	2	179428945	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108	179428945	63770428	3603	11754											
TTN	7273	broad.mit.edu	37	chr2	179430006	179430006	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactatttgttgccgttacGgtgtattttccaaagtcatc	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179430006	T	T	179430006	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179430006	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1061	179430006	63769367	3604	11755											
TTN	7273	broad.mit.edu	37	chr2	179430305	179430305	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattataagccttgacacGgaactgatattcttgtccag	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179430305	T	T	179430305	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	27573	1	TTN	2	179430305	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	299	179430305	63769068	3605	11756											
TTN	7273	broad.mit.edu	37	chr2	179430592	179430592	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcattttcagccatgactCtgaagtaataaatggctcct	6	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179430592	A	A	179430592	3	1	9	1	0	0	0	0	1	0	0	0	16861	913	32	3	27860	3	TTN	2	179430592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	287	179430592	63768781	3606	11757											
TTN	7273	broad.mit.edu	37	chr2	179431451	179431451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagctggacttggttcccCaactccagcagcattttctg	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179431451	A	A	179431451	3	1	9	1	0	0	0	0	1	0	0	0	16861	594	21	2	28719	2	TTN	2	179431451	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	859	179431451	63767922	3607	11758											
TTN	7273	broad.mit.edu	37	chr2	179431751	179431751	+	Nonsense_Mutation	SNP	C	A	A													tgcagattccaaaggctctcCaacaccatatttgttgacag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179431751	A	A	179431751	4	1	9	1	0	0	0	0	0	1	0	0	16861	603	21	2	29019	2	TTN	2	179431751	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	300	179431751	63767622	3608	11759	71	2									
TTN	7273	broad.mit.edu	37	chr2	179431757	179431757	+	Missense_Mutation	SNP	C	A	A													ttccaaaggctctccaacacCatatttgttgacagccatta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179431757	A	A	179431757	3	1	9	1	0	0	0	0	1	0	0	0	16861	594	21	2	29025	2	TTN	2	179431757	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6	179431757	63767616	3609	11760	71	2									
TTN	7273	broad.mit.edu	37	chr2	179433994	179433994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccaacaaaggaggttccCatgtaattgatactgagtct	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179433994	A	A	179433994	3	1	9	1	0	0	0	0	1	0	0	0	16861	595	21	2	31262	2	TTN	2	179433994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2237	179433994	63765379	3610	11761											
TTN	7273	broad.mit.edu	37	chr2	179434062	179434062	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtggacttggcgtgtcCagaactctcacagtaacaaa	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179434062	A	A	179434062	2	1	9	1	0	0	0	0	0	0	0	1	16861	581	21	2		2	TTN	2	179434062	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	179434062	63765311	3611	11762											
TTN	7273	broad.mit.edu	37	chr2	179434544	179434544	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttttcaacaatgtatcCttgaatttcacagccaccat	3	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179434544	A	A	179434544	4	1	9	1	0	0	0	0	0	1	0	0	16861	690	24	2	31812	2	TTN	2	179434544	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	482	179434544	63764829	3612	11763											
TTN	7273	broad.mit.edu	37	chr2	179435609	179435609	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacactcctgcggcatttcGggctataacccggaactcat	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179435609	T	T	179435609	2	4	9	1	0	0	0	0	0	0	0	1	16861	1124	39	1		1	TTN	2	179435609	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1065	179435609	63763764	3613	11764											
TTN	7273	broad.mit.edu	37	chr2	179437711	179437711	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggccagtgatagtatacGaagttgccttgagtcctgct	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179437711	T	T	179437711	4	4	9	1	0	0	0	0	0	1	0	0	16861	1059	37	3	34979	3	TTN	2	179437711	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2102	179437711	63761662	3614	11765											
TTN	7273	broad.mit.edu	37	chr2	179438310	179438310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttcaagagtttagtgacCtttagctttgttacttggac	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179438310	A	A	179438310	3	1	9	1	0	0	0	0	1	0	0	0	16861	680	24	2	35578	2	TTN	2	179438310	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	599	179438310	63761063	3615	11766											
TTN	7273	broad.mit.edu	37	chr2	179441334	179441334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttttctgcactgacacGgaattcgtaggtgcttcctt	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179441334	T	T	179441334	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	38494	1	TTN	2	179441334	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3024	179441334	63758039	3616	11767											
TTN	7273	broad.mit.edu	37	chr2	179441795	179441795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgaatatcttcagaaacCactgtccacaaaagtcggct	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179441795	A	A	179441795	2	1	9	1	0	0	0	0	0	0	0	1	16861	581	21	2		2	TTN	2	179441795	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	461	179441795	63757578	3617	11768											
TTN	7273	broad.mit.edu	37	chr2	179444867	179444867	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtttatgatggggcttcCgccatcaataatgggaggct	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179444867	A	A	179444867	4	1	9	1	0	0	0	0	0	1	0	0	16861	661	23	1	41012	1	TTN	2	179444867	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3072	179444867	63754506	3618	11769											
TTN	7273	broad.mit.edu	37	chr2	179446804	179446804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagtccagttaacagcctGggtttcccgcttttcaagca	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179446804	T	T	179446804	3	4	9	1	0	0	0	0	1	0	0	0	16861	1357	47	2	41879	2	TTN	2	179446804	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1937	179446804	63752569	3619	11770											
TTN	7273	broad.mit.edu	37	chr2	179449415	179449415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatgggaactgcgcaacCatctttggagatgtgagagg	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179449415	A	A	179449415	3	1	9	1	0	0	0	0	1	0	0	0	16861	594	21	2	43238	2	TTN	2	179449415	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2611	179449415	63749958	3620	11771											
TTN	7273	broad.mit.edu	37	chr2	179449453	179449453	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctctgaaatgccaaatcGgttttcagcacggacccgga	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179449453	T	T	179449453	2	4	9	1	0	0	0	0	0	0	0	1	16861	1124	39	1		1	TTN	2	179449453	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	179449453	63749920	3621	11772											
TTN	7273	broad.mit.edu	37	chr2	179449470	179449470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcggttttcagcacggaccCggaagatgtactcctggcct	11	12	1	1	rs141965360	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179449470	A	A	179449470	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	43293	1	TTN	2	179449470	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	179449470	63749903	3622	11773											
TTN	7273	broad.mit.edu	37	chr2	179449606	179449606	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggtgatgttactgcctcCgtcctccagagggatgtgcc	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179449606	A	A	179449606	4	1	9	1	0	0	0	0	0	1	0	0	16861	661	23	1	43429	1	TTN	2	179449606	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136	179449606	63749767	3623	11774											
TTN	7273	broad.mit.edu	37	chr2	179449868	179449868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgaggctgtagtaacCactgtctttcctagtcacat	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179449868	A	A	179449868	3	1	9	1	0	0	0	0	1	0	0	0	16861	594	21	2	43592	2	TTN	2	179449868	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	262	179449868	63749505	3624	11775											
TTN	7273	broad.mit.edu	37	chr2	179451874	179451874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgcaagcactggttttGggacatctgttgggacgcca	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179451874	T	T	179451874	3	4	9	1	0	0	0	0	1	0	0	0	16861	1348	47	2	44139	2	TTN	2	179451874	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2006	179451874	63747499	3625	11776											
TTN	7273	broad.mit.edu	37	chr2	179454446	179454446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggttttcaggctcacctGgtctgtcaatagggttaata	11	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179454446	T	T	179454446	3	4	9	1	0	0	0	0	1	0	0	0	16861	1348	47	2	46209	2	TTN	2	179454446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2572	179454446	63744927	3626	11777											
TTN	7273	broad.mit.edu	37	chr2	179454957	179454957	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcaggtctgcctttgactcGagctagaatgcggatagttt	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179454957	T	T	179454957	2	4	9	1	0	0	0	0	0	0	0	1	16861	1066	37	3		3	TTN	2	179454957	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	511	179454957	63744416	3627	11778											
TTN	7273	broad.mit.edu	37	chr2	179456110	179456110	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttaatctcactcccatcGgttgtccactttgcagtagg	8	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179456110	T	T	179456110	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179456110	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1153	179456110	63743263	3628	11779											
TTN	7273	broad.mit.edu	37	chr2	179456349	179456349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttcttgacattctatcGggatagttgtgtcagggaga	12	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179456349	T	T	179456349	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	48022	1	TTN	2	179456349	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	239	179456349	63743024	3629	11780											
TTN	7273	broad.mit.edu	37	chr2	179457222	179457222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaagcttgctaccaactGgagtcacatcaattcttgct	6	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179457222	T	T	179457222	3	4	9	1	0	0	0	0	1	0	0	0	16861	1348	47	2	48717	2	TTN	2	179457222	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	873	179457222	63742151	3630	11781											
TTN	7273	broad.mit.edu	37	chr2	179457603	179457603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttataggtttgaccgtccCgaagaccggtgactttatat	9	9	0	3	rs142791877	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179457603	A	A	179457603	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	48988	1	TTN	2	179457603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	381	179457603	63741770	3631	11782											
TTN	7273	broad.mit.edu	37	chr2	179463552	179463552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcattgattgcatataccCggaattgatagtcggaacct	9	9	0	2	rs141399146	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179463552	A	A	179463552	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	51096	1	TTN	2	179463552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5949	179463552	63735821	3632	11783											
TTN	7273	broad.mit.edu	37	chr2	179463936	179463936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatgccatatttattctGggccatgattcggaatacat	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179463936	T	T	179463936	3	4	9	1	0	0	0	0	1	0	0	0	16861	1357	47	2	51401	2	TTN	2	179463936	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	384	179463936	63735437	3633	11784											
TTN	7273	broad.mit.edu	37	chr2	179465757	179465757	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaggcttctttctttgtcCcagtagggtcccatgcaagg	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179465757	G	G	179465757	3	3	9	1	0	0	0	0	1	0	0	0	16861	623	22	4	52119	4	TTN	2	179465757	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1821	179465757	63733616	3634	11785											
TTN	7273	broad.mit.edu	37	chr2	179469837	179469837	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtttttgcctcacttcGggatacctcttccttggtta	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179469837	T	T	179469837	2	4	9	1	0	0	0	0	0	0	0	1	16861	1124	39	1		1	TTN	2	179469837	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4080	179469837	63729536	3635	11786											
TTN	7273	broad.mit.edu	37	chr2	179472266	179472266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgttgtctattacaacacGgtctttatccagctcccctt	5	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179472266	T	T	179472266	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	54888	1	TTN	2	179472266	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2429	179472266	63727107	3636	11787											
TTN	7273	broad.mit.edu	37	chr2	179474290	179474290	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttctcagaatgactttGggggcatctatagtgatcat	10	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179474290	T	T	179474290	2	4	9	1	0	0	0	0	0	0	0	1	16861	1335	47	2		2	TTN	2	179474290	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2024	179474290	63725083	3637	11788											
TTN	7273	broad.mit.edu	37	chr2	179474394	179474394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgggaaagtggcaactcCatgaaacaaaacttaccaat	7	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179474394	A	A	179474394	1	1	9	0	1	0	0	0	0	0	0	0	16861	609	21	2		2	TTN	2	179474394	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	179474394	63724979	3638	11789											
TTN	7273	broad.mit.edu	37	chr2	179474446	179474446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggttggaggagtagccCgagaaggttcactaataccc	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179474446	A	A	179474446	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	56353	1	TTN	2	179474446	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	179474446	63724927	3639	11790											
TTN	7273	broad.mit.edu	37	chr2	179476556	179476556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcttcattttcagccCgaacctgaaactggacctct	6	15	3	1	rs138896856	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179476556	A	A	179476556	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	57593	1	TTN	2	179476556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2110	179476556	63722817	3640	11791											
TTN	7273	broad.mit.edu	37	chr2	179480136	179480136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaccaccatcatttttaGgtggatcccatgttaagaag	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179480136	T	T	179480136	3	4	9	1	0	0	0	0	1	0	0	0	16861	1000	35	2	59573	2	TTN	2	179480136	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3580	179480136	63719237	3641	11792											
TTN	7273	broad.mit.edu	37	chr2	179484414	179484414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtattcaccctggtcacGgggcttaatatcacaaatct	7	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179484414	T	T	179484414	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	61515	1	TTN	2	179484414	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4278	179484414	63714959	3642	11793											
TTN	7273	broad.mit.edu	37	chr2	179484468	179484468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccttcactcatcatctGgtgtttatcaccctggacaa	5	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179484468	T	T	179484468	3	4	9	1	0	0	0	0	1	0	0	0	16861	1357	47	2	61569	2	TTN	2	179484468	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54	179484468	63714905	3643	11794											
TTN	7273	broad.mit.edu	37	chr2	179485079	179485079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgttccacaaattctgtcGgggcttctatgatgagaagc	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179485079	T	T	179485079	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	61984	1	TTN	2	179485079	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	611	179485079	63714294	3644	11795											
TTN	7273	broad.mit.edu	37	chr2	179516976	179516976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaatatcaaacacagcacCatgagggtgtctaccttttg	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179516976	A	A	179516976	1	1	9	0	1	0	0	0	0	0	0	0	16861	609	21	2		2	TTN	2	179516976	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31897	179516976	63682397	3645	11796											
TTN	7273	broad.mit.edu	37	chr2	179517020	179517020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcacttcaggctttttaGgaggaggcactggcactttc	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179517020	T	T	179517020	3	4	9	1	0	0	0	0	1	0	0	0	16861	1000	35	2	68729	2	TTN	2	179517020	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	179517020	63682353	3646	11797											
TTN	7273	broad.mit.edu	37	chr2	179526497	179526497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaatacctttaacaggtGggacttcaggctttttagga	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179526497	T	T	179526497	3	4	9	1	0	0	0	0	1	0	0	0	16861	1363	47	2		2	TTN	2	179526497	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9477	179526497	63672876	3647	11798											
TTN	7273	broad.mit.edu	37	chr2	179534397	179534397	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacaattttcttgggtacttCgggtgctttaaagatattta	9	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179534397	A	A	179534397	1	1	9	0	1	0	0	0	0	0	0	0	16861	899	31	3		3	TTN	2	179534397	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	7900	179534397	63664976	3648	11799											
TTN	7273	broad.mit.edu	37	chr2	179539774	179539774	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagttatctaccttcaactGgtagaacttcctcttcttta	4	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179539774	C	C	179539774	3	2	9	1	0	0	0	0	1	0	0	0	16861	1348	47	4	69956	4	TTN	2	179539774	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5377	179539774	63659599	3649	11800											
TTN	7273	broad.mit.edu	37	chr2	179542439	179542439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtacatattcttcttcGggaggaacttcctcttcctc	7	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179542439	T	T	179542439	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179542439	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2665	179542439	63656934	3650	11801											
TTN	7273	broad.mit.edu	37	chr2	179547402	179547402	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacatatttagtgtggttttGagtttgcagttttgctcata	9	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179547402	T	T	179547402	1	4	9	0	1	0	0	0	0	0	0	0	16861	1305	45	3		3	TTN	2	179547402	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4963	179547402	63651971	3651	11802											
TTN	7273	broad.mit.edu	37	chr2	179547564	179547564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctcatattcttcttccCgttgtactgaaacagcttct	4	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179547564	A	A	179547564	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	71487	1	TTN	2	179547564	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	162	179547564	63651809	3652	11803											
TTN	7273	broad.mit.edu	37	chr2	179565881	179565881	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtggtttcttttcttcGggtgttggtagcaaaagggg	17	4	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179565881	T	T	179565881	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179565881	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18317	179565881	63633492	3653	11804											
TTN	7273	broad.mit.edu	37	chr2	179567277	179567277	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtcagttctgttggtcCtttgtaccatgttacaatgg	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179567277	A	A	179567277	4	1	9	1	0	0	0	0	0	1	0	0	16861	690	24	2	74216	2	TTN	2	179567277	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1396	179567277	63632096	3654	11805											
TTN	7273	broad.mit.edu	37	chr2	179571293	179571293	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgttaaatgccacgcatcGgtataacccagaatcagttt	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179571293	T	T	179571293	2	4	9	1	0	0	0	0	0	0	0	1	16861	1124	39	1		1	TTN	2	179571293	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4016	179571293	63628080	3655	11806											
TTN	7273	broad.mit.edu	37	chr2	179575970	179575970	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtctttataccaagacacGgagataggttctgatccact	8	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179575970	T	T	179575970	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179575970	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4677	179575970	63623403	3656	11807											
TTN	7273	broad.mit.edu	37	chr2	179579055	179579055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgaagcactcttgcatccCagcatcgtttttgatctgac	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179579055	A	A	179579055	3	1	9	1	0	0	0	0	1	0	0	0	16861	594	21	2	78171	2	TTN	2	179579055	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3085	179579055	63620318	3657	11808											
TTN	7273	broad.mit.edu	37	chr2	179584294	179584294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcaccagaaacatggacGgatacagtgcagttactttt	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179584294	T	T	179584294	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179584294	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5239	179584294	63615079	3658	11809											
TTN	7273	broad.mit.edu	37	chr2	179585148	179585149	+	Nonsense_Mutation	DNP	CC	AA	AA													gcaagaacacgtgtcacttcCcacctcattagtagctttgc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	179585149	AA	AA	179585148	4	1	9	1	0	0	0	0	0	1	0	0	16861	632	22	2	81320	2	TTN	2	179585148	Nonsense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	854	179585148	63614225	3659	11810											
TTN	7273	broad.mit.edu	37	chr2	179585181	179585181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttgcagtgatattcccCgacatcggaggcttcaagat	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179585181	A	A	179585181	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	81353	1	TTN	2	179585181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	179585181	63614192	3660	11811											
TTN	7273	broad.mit.edu	37	chr2	179586724	179586724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatagtttcctccaggacGgatctccttgttatcttttg	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179586724	T	T	179586724	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	82003	1	TTN	2	179586724	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1543	179586724	63612649	3661	11812											
TTN	7273	broad.mit.edu	37	chr2	179596042	179596042	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaaccaaccttttactgaGagtaatgcagaacatctttg	7	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179596042	T	T	179596042	2	4	9	1	0	0	0	0	0	0	0	1	16861	929	33	3		3	TTN	2	179596042	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9318	179596042	63603331	3662	11813											
TTN	7273	broad.mit.edu	37	chr2	179596081	179596081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattcctgcatcatttttGgcctgacagacatatttccc	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179596081	T	T	179596081	2	4	9	1	0	0	0	0	0	0	0	1	16861	1335	47	2		2	TTN	2	179596081	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	179596081	63603292	3663	11814											
TTN	7273	broad.mit.edu	37	chr2	179598189	179598189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgtactccagtgtggcGggatctcctgctgtcacctg	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179598189	T	T	179598189	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179598189	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2108	179598189	63601184	3664	11815											
TTN	7273	broad.mit.edu	37	chr2	179598286	179598286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccctaaatgcttgttaGggtttcactttaattctaaa	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179598286	T	T	179598286	1	4	9	0	1	0	0	0	0	0	0	0	16861	1015	35	2		2	TTN	2	179598286	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	97	179598286	63601087	3665	11816											
TTN	7273	broad.mit.edu	37	chr2	179599503	179599503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcacatgagtaactccCactgtcttcaacttttacat	4	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179599503	A	A	179599503	3	1	9	1	0	0	0	0	1	0	0	0	16861	594	21	2	89629	2	TTN	2	179599503	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1217	179599503	63599870	3666	11817											
TTN	7273	broad.mit.edu	37	chr2	179604487	179604487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctgaattctaggaccCtcagctgttaggatgtctat	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179604487	A	A	179604487	3	1	9	1	0	0	0	0	1	0	0	0	16861	680	24	2	91316	2	TTN	2	179604487	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4984	179604487	63594886	3667	11818											
TTN	7273	broad.mit.edu	37	chr2	179604511	179604511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttaggatgtctatttcCtcatatataatagcacacaa	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179604511	A	A	179604511	3	1	9	1	0	0	0	0	1	0	0	0	16861	680	24	2	91340	2	TTN	2	179604511	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	179604511	63594862	3668	11819											
TTN	7273	broad.mit.edu	37	chr2	179605726	179605726	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaagcagctttcaaaatGgtgtcttttacaaacgttgc	7	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179605726	T	T	179605726	2	4	9	1	0	0	0	0	0	0	0	1	16861	1335	47	2		2	TTN	2	179605726	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1215	179605726	63593647	3669	11820											
TTN	7273	broad.mit.edu	37	chr2	179605786	179605786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcttcaactgcgggaccCtttaagggtgtctgtggaaa	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179605786	A	A	179605786	3	1	9	1	0	0	0	0	1	0	0	0	16861	680	24	2	92615	2	TTN	2	179605786	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	179605786	63593587	3670	11821											
TTN	7273	broad.mit.edu	37	chr2	179610900	179610900	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttataccacttaacttcGggagtcgggatccctatgac	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179610900	T	T	179610900	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179610900	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5114	179610900	63588473	3671	11822											
TTN	7273	broad.mit.edu	37	chr2	179612414	179612414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaagtaaatattgtgttaGggaggtctcagattctgctg	12	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179612414	T	T	179612414	3	4	9	1	0	0	0	0	1	0	0	0	16861	991	35	2	95584	2	TTN	2	179612414	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1514	179612414	63586959	3672	11823											
TTN	7273	broad.mit.edu	37	chr2	179634465	179634465	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agacaaatgtgtattctgccGagtcctctgtgctggtgttc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179634465	T	T	179634465	4	4	9	1	0	0	0	0	0	1	0	0	16861	1059	37	3	102449	3	TTN	2	179634465	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22051	179634465	63564908	3673	11824											
TTN	7273	broad.mit.edu	37	chr2	179640373	179640373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttggagcctccatactaGgacttagttcaatcttgtca	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179640373	T	T	179640373	3	4	9	1	0	0	0	0	1	0	0	0	16861	1000	35	2	105110	2	TTN	2	179640373	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5908	179640373	63559000	3674	11825											
TTN	7273	broad.mit.edu	37	chr2	179640849	179640849	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacaccttcaggattttcCgcggtgaccttcacttcacc	6	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179640849	A	A	179640849	2	1	9	1	0	0	0	0	0	0	0	1	16861	639	23	1		1	TTN	2	179640849	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	476	179640849	63558524	3675	11826											
TTN	7273	broad.mit.edu	37	chr2	179641600	179641600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgctctatatgtccccCgtgggatgattaactttctc	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179641600	A	A	179641600	3	1	9	1	0	0	0	0	1	0	0	0	16861	652	23	1	106337	1	TTN	2	179641600	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	751	179641600	63557773	3676	11827											
TTN	7273	broad.mit.edu	37	chr2	179641936	179641936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaaccatacaatgtcaGggttggggttacccgtagct	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179641936	T	T	179641936	3	4	9	1	0	0	0	0	1	0	0	0	16861	1000	35	2	106578	2	TTN	2	179641936	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	336	179641936	63557437	3677	11828											
TTN	7273	broad.mit.edu	37	chr2	179641950	179641950	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcagggttggggttaccCgtagctctgactttcatttc	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179641950	A	A	179641950	2	1	9	1	0	0	0	0	0	0	0	1	16861	639	23	1		1	TTN	2	179641950	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	179641950	63557423	3678	11829											
TTN	7273	broad.mit.edu	37	chr2	179642595	179642595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctccagcctacgtccaGgggacattcttgcaggggac	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179642595	T	T	179642595	3	4	9	1	0	0	0	0	1	0	0	0	16861	1000	35	2	107024	2	TTN	2	179642595	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	645	179642595	63556778	3679	11830											
TTN	7273	broad.mit.edu	37	chr2	179648838	179648838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcaaagcgctcttcacGgacggtggtgccagtgatgc	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179648838	T	T	179648838	3	4	9	1	0	0	0	0	1	0	0	0	16861	1116	39	1	108642	1	TTN	2	179648838	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6243	179648838	63550535	3680	11831											
TTN	7273	broad.mit.edu	37	chr2	179659892	179659892	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcaggacctgtggccacGgtggatgcctgagtcttacg	13	11	2	1	rs148094198	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179659892	T	T	179659892	2	4	9	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179659892	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11054	179659892	63539481	3681	11832											
TTN	7273	broad.mit.edu	37	chr2	179664563	179664563	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaataccttttcaattcGggtttgtcttgattctgaga	8	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179664563	T	T	179664563	2	4	9	1	0	0	0	0	0	0	0	1	16861	1124	39	1		1	TTN	2	179664563	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4671	179664563	63534810	3682	11833											
CCDC141	285025	broad.mit.edu	37	chr2	179730402	179730402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgtttgcatgtgtgtGggagtgtgcacaaatgtgga	16	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179730402	T	T	179730402	1	4	9	0	1	0	0	0	0	0	0	0	2801	1363	47	2		2	CCDC141	2	179730402	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65839	179730402	63468971	3683	11834											
CCDC141	285025	broad.mit.edu	37	chr2	179733830	179733830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatttttcagacatccCttctaagccttacctcttcc	4	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179733830	A	A	179733830	1	1	9	0	1	0	0	0	0	0	0	0	2801	696	24	2		2	CCDC141	2	179733830	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3428	179733830	63465543	3684	11835											
SESTD1	91404	broad.mit.edu	37	chr2	179974587	179974587	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtatgttgacaacatgcGggattatgaactgcaaatct	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179974587	T	T	179974587	1	4	9	0	1	0	0	0	0	0	0	0	14240	1131	39	1		1	SESTD1	2	179974587	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	240757	179974587	63224786	3685	11836											
SESTD1	91404	broad.mit.edu	37	chr2	179982411	179982411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattgtaacatcatcatttGgtacatgtattttatagtac	5	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179982411	T	T	179982411	1	4	9	0	1	0	0	0	0	0	0	0	14240	1363	47	2		2	SESTD1	2	179982411	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7824	179982411	63216962	3686	11837											
ITGA4	3676	broad.mit.edu	37	chr2	182347180	182347180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacctttagtatctctgtGggcttttgcgagtaaccctg	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182347180	T	T	182347180	1	4	9	0	1	0	0	0	0	0	0	0	7948	1363	47	2		2	ITGA4	2	182347180	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2364769	182347180	60852193	3687	11838											
ITGA4	3676	broad.mit.edu	37	chr2	182347321	182347321	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatctgctcgtgggagcaccCatgcagagcaccatcagaga	12	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182347321	G	G	182347321	2	3	9	1	0	0	0	0	0	0	0	1	7948	581	21	4		4	ITGA4	2	182347321	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	141	182347321	60852052	3688	11839											
ITGA4	3676	broad.mit.edu	37	chr2	182374395	182374395	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccttagaaagatgtgcGggacatcctcaccccaattc	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182374395	T	T	182374395	3	4	9	1	0	0	0	0	1	0	0	0	7948	1116	39	1	1768	1	ITGA4	2	182374395	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27074	182374395	60824978	3689	11840											
ITGA4	3676	broad.mit.edu	37	chr2	182374478	182374478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgaagtacagaggaattcCcaccacttcagccaattctt	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182374478	A	A	182374478	3	1	9	1	0	0	0	0	1	0	0	0	7948	623	22	2	1851	2	ITGA4	2	182374478	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	182374478	60824895	3690	11841											
ITGA4	3676	broad.mit.edu	37	chr2	182387035	182387035	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctacatgtcaaactaccCgtgggtctttatttcattaa	5	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182387035	A	A	182387035	2	1	9	1	0	0	0	0	0	0	0	1	7948	639	23	1		1	ITGA4	2	182387035	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12557	182387035	60812338	3691	11842											
SSFA2	6744	broad.mit.edu	37	chr2	182760805	182760805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcagtagtacactcaaGggtaagagaaggttgccttt	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182760805	T	T	182760805	3	4	9	1	0	0	0	0	1	0	0	0	15301	1014	35	2	316	2	SSFA2	2	182760805	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	373770	182760805	60438568	3692	11843											
SSFA2	6744	broad.mit.edu	37	chr2	182761681	182761681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaagatgatttgtcattGggagctgaaggtatgtttgt	13	2	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182761681	T	T	182761681	3	4	9	1	0	0	0	0	1	0	0	0	15301	1339	47	2	368	2	SSFA2	2	182761681	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	876	182761681	60437692	3693	11844											
PDE1A	5136	broad.mit.edu	37	chr2	183053788	183053788	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcagcttctttatctccCtggagaaagaaaagcacatt	6	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183053788	A	A	183053788	5	1	9	1	0	0	0	0	0	0	1	0	11727	695	24	2	528	2	PDE1A	2	183053788	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	292107	183053788	60145585	3694	11845											
DNAJC10	54431	broad.mit.edu	37	chr2	183616512	183616512	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgttgatttctttgccccCgtaagttatttttatctgtc	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183616512	A	A	183616512	2	1	9	1	0	0	0	0	0	0	0	1	4669	666	23	1		1	DNAJC10	2	183616512	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	562724	183616512	59582861	3695	11846											
NCKAP1	10787	broad.mit.edu	37	chr2	183866689	183866689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcctcttaccttgctatGgggtacaaattcttccatca	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183866689	T	T	183866689	3	4	9	1	0	0	0	0	1	0	0	0	10316	1348	47	2	2895	2	NCKAP1	2	183866689	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	250177	183866689	59332684	3696	11847											
NUP35	129401	broad.mit.edu	37	chr2	184023126	184023126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatgattggtgtaaaacCatgtattgacaaagtaagtt	8	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184023126	A	A	184023126	3	1	9	1	0	0	0	0	1	0	0	0	10858	594	21	2	751	2	NUP35	2	184023126	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	156437	184023126	59176247	3697	11848											
ZNF804A	91752	broad.mit.edu	37	chr2	185801408	185801408	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagccatttgtacctgtcCttaacaaacacagatctaca	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185801408	T	T	185801408	3	4	9	1	0	0	0	0	1	0	0	0	18299	681	24	4	1299	4	ZNF804A	2	185801408	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1778282	185801408	57397965	3698	11849											
ZNF804A	91752	broad.mit.edu	37	chr2	185802628	185802628	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaaatacagattatccCgtgaaagacaattcttcctt	5	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185802628	A	A	185802628	2	1	9	1	0	0	0	0	0	0	0	1	18299	639	23	1		1	ZNF804A	2	185802628	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1220	185802628	57396745	3699	11850											
ZC3H15	55854	broad.mit.edu	37	chr2	187371489	187371489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatttaagcctgtacatccCaagagatgtagatgaaacag	9	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187371489	A	A	187371489	3	1	9	1	0	0	0	0	1	0	0	0	17693	594	21	2	1050	2	ZC3H15	2	187371489	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1568861	187371489	55827884	3700	11851											
ITGAV	3685	broad.mit.edu	37	chr2	187455128	187455128	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcccgcttcttctctcGggactcctgctacctctgtg	9	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187455128	T	T	187455128	2	4	9	1	0	0	0	0	0	0	0	1	7958	1103	39	1		1	ITGAV	2	187455128	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83639	187455128	55744245	3701	11852											
ITGAV	3685	broad.mit.edu	37	chr2	187495490	187495490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgtgttgtttgtttttGggtttgtgtatatttccaat	10	2	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187495490	T	T	187495490	1	4	9	0	1	0	0	0	0	0	0	0	7958	1363	47	2		2	ITGAV	2	187495490	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	40362	187495490	55703883	3702	11853											
ITGAV	3685	broad.mit.edu	37	chr2	187500858	187500858	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtatctaaatacgacccCaatgtttacagcatcaagta	5	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187500858	A	A	187500858	2	1	9	1	0	0	0	0	0	0	0	1	7958	581	21	2		2	ITGAV	2	187500858	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5368	187500858	55698515	3703	11854											
ITGAV	3685	broad.mit.edu	37	chr2	187529256	187529256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatattggggatgacaaccCtctgacattgattgttaagg	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187529256	A	A	187529256	3	1	9	1	0	0	0	0	1	0	0	0	7958	681	24	2	2090	2	ITGAV	2	187529256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28398	187529256	55670117	3704	11855											
ITGAV	3685	broad.mit.edu	37	chr2	187529348	187529348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcaggctgatttcatcGgggttgtccgaaacaatgaa	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187529348	T	T	187529348	3	4	9	1	0	0	0	0	1	0	0	0	7958	1116	39	1	2182	1	ITGAV	2	187529348	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	92	187529348	55670025	3705	11856											
ZSWIM2	151112	broad.mit.edu	37	chr2	187702135	187702135	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcagctactagtttgctaGagtttttgaattcctccaaa	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187702135	T	T	187702135	3	4	9	1	0	0	0	0	1	0	0	0	18370	942	33	3	1280	3	ZSWIM2	2	187702135	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	172787	187702135	55497238	3706	11857											
CALCRL	10203	broad.mit.edu	37	chr2	188223790	188223790	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagaatttgttacatacCagtaaagcagcacaaattgg	9	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188223790	A	A	188223790	2	1	9	1	0	0	0	0	0	0	0	1	2606	608	21	2		2	CALCRL	2	188223790	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	521655	188223790	54975583	3707	11858											
CALCRL	10203	broad.mit.edu	37	chr2	188243691	188243691	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aataaaagaatatgccaagcGagataagcagtgatgcaata	9	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188243691	T	T	188243691	4	4	9	1	0	0	0	0	0	1	0	0	2606	1059	37	3	941	3	CALCRL	2	188243691	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19901	188243691	54955682	3708	11859											
COL3A1	1281	broad.mit.edu	37	chr2	189866245	189866245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgcaagacagtgacatGgcttctctttttccagggtg	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189866245	T	T	189866245	1	4	9	0	1	0	0	0	0	0	0	0	3720	1363	47	2		2	COL3A1	2	189866245	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1622554	189866245	53333128	3709	11860											
COL3A1	1281	broad.mit.edu	37	chr2	189873898	189873898	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggttctcgtaaaaacccCgctagaaactgcagagacct	9	11	1	2	rs149790711	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189873898	A	A	189873898	2	1	9	1	0	0	0	0	0	0	0	1	3720	639	23	1		1	COL3A1	2	189873898	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7653	189873898	53325475	3710	11861											
COL5A2	1290	broad.mit.edu	37	chr2	189899918	189899918	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttgtcatacacaagactGaagggtttcataatgcctta	7	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189899918	T	T	189899918	1	4	9	0	1	0	0	0	0	0	0	0	3729	1305	45	3		3	COL5A2	2	189899918	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26020	189899918	53299455	3711	11862											
COL5A2	1290	broad.mit.edu	37	chr2	189903965	189903965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaacaatcagaaacaacGggttttgctcaaatgggctg	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189903965	T	T	189903965	1	4	9	0	1	0	0	0	0	0	0	0	3729	1131	39	1		1	COL5A2	2	189903965	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4047	189903965	53295408	3712	11863											
COL5A2	1290	broad.mit.edu	37	chr2	189916925	189916925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaggtccaactctgccCgcagaaccaggaaatcctgt	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189916925	A	A	189916925	2	1	9	1	0	0	0	0	0	0	0	1	3729	639	23	1		1	COL5A2	2	189916925	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12960	189916925	53282448	3713	11864											
COL5A2	1290	broad.mit.edu	37	chr2	189923159	189923159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactatgacacttacttttGggccatcaggaccatgtcct	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189923159	T	T	189923159	3	4	9	1	0	0	0	0	1	0	0	0	3729	1348	47	2	2362	2	COL5A2	2	189923159	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6234	189923159	53276214	3714	11865											
COL5A2	1290	broad.mit.edu	37	chr2	189927517	189927517	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaacttacccataagtcttGaacaaacatcatcgaaaaaa	4	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189927517	T	T	189927517	1	4	9	0	1	0	0	0	0	0	0	0	3729	1305	45	3		3	COL5A2	2	189927517	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4358	189927517	53271856	3715	11866											
COL5A2	1290	broad.mit.edu	37	chr2	189927933	189927933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggaaggcccatgctccCgggctgccctctgattccta	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189927933	A	A	189927933	3	1	9	1	0	0	0	0	1	0	0	0	3729	652	23	1	2777	1	COL5A2	2	189927933	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	416	189927933	53271440	3716	11867											
COL5A2	1290	broad.mit.edu	37	chr2	189931153	189931153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggaccaactgttcctGggtcacctctgggacctctt	11	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189931153	T	T	189931153	3	4	9	1	0	0	0	0	1	0	0	0	3729	1348	47	2	3101	2	COL5A2	2	189931153	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3220	189931153	53268220	3717	11868											
COL5A2	1290	broad.mit.edu	37	chr2	189932952	189932952	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccataaatgcagtactcacCgttgggcctttggcaccagg	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189932952	A	A	189932952	2	1	9	1	0	0	0	0	0	0	0	1	3729	666	23	1		1	COL5A2	2	189932952	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1799	189932952	53266421	3718	11869											
COL5A2	1290	broad.mit.edu	37	chr2	189945770	189945770	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaaatccacgagctccCtgggaggaaaacatagatag	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189945770	G	G	189945770	5	3	9	1	0	0	0	0	0	0	1	0	3729	695	24	4	3815	4	COL5A2	2	189945770	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	12818	189945770	53253603	3719	11870											
COL5A2	1290	broad.mit.edu	37	chr2	189953453	189953453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagtcctacttgactccCaagtccagatttttcatcca	4	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189953453	A	A	189953453	3	1	9	1	0	0	0	0	1	0	0	0	3729	594	21	2	4074	2	COL5A2	2	189953453	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7683	189953453	53245920	3720	11871											
WDR75	84128	broad.mit.edu	37	chr2	190316543	190316543	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcagactttcatagttGgatgtaaacttcatgccctc	6	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190316543	T	T	190316543	4	4	9	1	0	0	0	0	0	1	0	0	17452	1349	47	2	309	2	WDR75	2	190316543	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	363090	190316543	52882830	3721	11872											
WDR75	84128	broad.mit.edu	37	chr2	190327291	190327291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaataaggagtttctccCgcgtttaggagctactattg	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190327291	A	A	190327291	3	1	9	1	0	0	0	0	1	0	0	0	17452	652	23	1	894	1	WDR75	2	190327291	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10748	190327291	52872082	3722	11873											
SLC40A1	30061	broad.mit.edu	37	chr2	190439933	190439933	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtcaccgatgatggctccCaggaccagaacagaccctgc	10	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190439933	G	G	190439933	2	3	9	1	0	0	0	0	0	0	0	1	14742	581	21	4		4	SLC40A1	2	190439933	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	112642	190439933	52759440	3723	11874											
ASNSD1	54529	broad.mit.edu	37	chr2	190532287	190532287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattggttggttagtggccCaggaaggagtgaaatcctat	14	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190532287	A	A	190532287	3	1	9	1	0	0	0	0	1	0	0	0	1053	595	21	2	1431	2	ASNSD1	2	190532287	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92354	190532287	52667086	3724	11875											
ANKAR	150709	broad.mit.edu	37	chr2	190554340	190554340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatatgatcccaacagccCtgaagaaacagctgtattta	6	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190554340	A	A	190554340	3	1	9	1	0	0	0	0	1	0	0	0	623	681	24	2	695	2	ANKAR	2	190554340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22053	190554340	52645033	3725	11876											
ANKAR	150709	broad.mit.edu	37	chr2	190606123	190606123	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtatcccagaagcatttacCacattaggaacaatccaacg	7	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190606123	G	G	190606123	2	3	9	1	0	0	0	0	0	0	0	1	623	581	21	4		4	ANKAR	2	190606123	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51783	190606123	52593250	3726	11877											
ANKAR	150709	broad.mit.edu	37	chr2	190611117	190611117	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttttagggaaggagcacCgaagaaaattaaaacctaaa	8	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190611117	A	A	190611117	2	1	9	1	0	0	0	0	0	0	0	1	623	644	23	1		1	ANKAR	2	190611117	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4994	190611117	52588256	3727	11878											
PMS1	5378	broad.mit.edu	37	chr2	190728664	190728664	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatgaactccttcagtcCcaaattgaaaaaagaaggag	8	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190728664	A	A	190728664	2	1	9	1	0	0	0	0	0	0	0	1	12237	610	22	2		2	PMS1	2	190728664	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	117547	190728664	52470709	3728	11879											
HIBCH	26275	broad.mit.edu	37	chr2	191109623	191109623	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaatattaccttcaattgcTctagggcaaaagatgaacca	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191109623	A	A	191109623	3	1	9	1	0	0	0	0	1	0	0	0	7167	1551	54	5	295	5	HIBCH	2	191109623	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	380959	191109623	52089750	3729	11880											
HIBCH	26275	broad.mit.edu	37	chr2	191125960	191125960	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggactgagagaccaactcCctagagaaaaaaggcaaaaa	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191125960	A	A	191125960	4	1	9	1	0	0	0	0	0	1	0	0	7167	637	22	2	753	2	HIBCH	2	191125960	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16337	191125960	52073413	3730	11881											
INPP1	3628	broad.mit.edu	37	chr2	191233957	191233957	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaggggttcccctgatgGgagtcatcaatcaacctttt	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191233957	T	T	191233957	4	4	9	1	0	0	0	0	0	1	0	0	7821	1233	43	2	609	2	INPP1	2	191233957	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107997	191233957	51965416	3731	11882											
INPP1	3628	broad.mit.edu	37	chr2	191235678	191235678	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacacacactggaaacacCggctctgaggcagcattctc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191235678	A	A	191235678	2	1	9	1	0	0	0	0	0	0	0	1	7821	639	23	1		1	INPP1	2	191235678	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1721	191235678	51963695	3732	11883											
NAB1	4664	broad.mit.edu	37	chr2	191554889	191554889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactatttgatatggagtttGggggtttgttttaaaacttt	10	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191554889	T	T	191554889	1	4	9	0	1	0	0	0	0	0	0	0	10225	1363	47	2		2	NAB1	2	191554889	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	319211	191554889	51644484	3733	11884											
NAB1	4664	broad.mit.edu	37	chr2	191555076	191555076	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagctgtgatttctctcacCgttctctggaaatggcatca	8	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191555076	A	A	191555076	1	1	9	0	1	0	0	0	0	0	0	0	10225	667	23	1		1	NAB1	2	191555076	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	187	191555076	51644297	3734	11885											
GLS	2744	broad.mit.edu	37	chr2	191766711	191766711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactggccaaattcagtccCgatttgtggggtgtgtctgt	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191766711	A	A	191766711	2	1	9	1	0	0	0	0	0	0	0	1	6527	639	23	1		1	GLS	2	191766711	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	211635	191766711	51432662	3735	11886											
STAT1	6772	broad.mit.edu	37	chr2	191849017	191849017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgaagttttccaactcGggaccataaaagtcttacct	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191849017	T	T	191849017	1	4	9	0	1	0	0	0	0	0	0	0	15382	1131	39	1		1	STAT1	2	191849017	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	82306	191849017	51350356	3736	11887											
STAT4	6775	broad.mit.edu	37	chr2	191894658	191894658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatcaatcactatttcttGggcaaataaacgtcctcttt	4	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191894658	T	T	191894658	1	4	9	0	1	0	0	0	0	0	0	0	15385	1363	47	2		2	STAT4	2	191894658	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45641	191894658	51304715	3737	11888											
STAT4	6775	broad.mit.edu	37	chr2	191895740	191895740	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggttttctctcaacacCgcatacacacttggagacat	6	13	3	1	rs139030621		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191895740	A	A	191895740	2	1	9	1	0	0	0	0	0	0	0	1	15385	639	23	1		1	STAT4	2	191895740	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1082	191895740	51303633	3738	11889											
STAT4	6775	broad.mit.edu	37	chr2	191895761	191895761	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatacacacttggagacatGggaagaaggtctgatggaga	14	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191895761	T	T	191895761	2	4	9	1	0	0	0	0	0	0	0	1	15385	1335	47	2		2	STAT4	2	191895761	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	191895761	51303612	3739	11890											
STAT4	6775	broad.mit.edu	37	chr2	191905794	191905794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcttgaaacacctacctcCaaatctatggtcaggccata	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191905794	A	A	191905794	3	1	9	1	0	0	0	0	1	0	0	0	15385	593	21	2	954	2	STAT4	2	191905794	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10033	191905794	51293579	3740	11891											
STAT4	6775	broad.mit.edu	37	chr2	191905875	191905875	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcaccatgtgacagccCtaaggaagagagaaataaat	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191905875	A	A	191905875	5	1	9	1	0	0	0	0	0	0	1	0	15385	695	24	2	1035	2	STAT4	2	191905875	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	191905875	51293498	3741	11892											
STAT4	6775	broad.mit.edu	37	chr2	191926493	191926493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattagggttttaagtacCaacggcctctgagggtgggt	14	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191926493	A	A	191926493	3	1	9	1	0	0	0	0	1	0	0	0	15385	593	21	2	1310	2	STAT4	2	191926493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20618	191926493	51272880	3742	11893											
STAT4	6775	broad.mit.edu	37	chr2	191927613	191927613	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtttctccaattgccttctCagttggaaaagactttctgc	7	10	3	1	rs140221173	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191927613	A	A	191927613	2	1	9	1	0	0	0	0	0	0	0	1	15385	813	29	3		3	STAT4	2	191927613	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1120	191927613	51271760	3743	11894											
STAT4	6775	broad.mit.edu	37	chr2	191929555	191929555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgaagctggtcgagccCattgtggagtggacccccga	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191929555	A	A	191929555	3	1	9	1	0	0	0	0	1	0	0	0	15385	594	21	2	1554	2	STAT4	2	191929555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1942	191929555	51269818	3744	11895											
MYO1B	4430	broad.mit.edu	37	chr2	192194713	192194713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgagatcaagataaggacCaatgtattctcattactggg	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192194713	A	A	192194713	3	1	9	1	0	0	0	0	1	0	0	0	10163	595	21	2	314	2	MYO1B	2	192194713	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	265158	192194713	51004660	3745	11896											
MYO1B	4430	broad.mit.edu	37	chr2	192206280	192206280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcttttacagtccaaccCggtcctggaaggtaggatgt	11	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192206280	A	A	192206280	3	1	9	1	0	0	0	0	1	0	0	0	10163	652	23	1	454	1	MYO1B	2	192206280	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11567	192206280	50993093	3746	11897											
MYO1B	4430	broad.mit.edu	37	chr2	192252060	192252060	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcaagtctttgttcccCgaagggaatcccgccaagat	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192252060	A	A	192252060	2	1	9	1	0	0	0	0	0	0	0	1	10163	639	23	1		1	MYO1B	2	192252060	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45780	192252060	50947313	3747	11898											
MYO1B	4430	broad.mit.edu	37	chr2	192261187	192261187	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccagcagacaaagagttcCgccttagtaattcagtctta	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192261187	A	A	192261187	2	1	9	1	0	0	0	0	0	0	0	1	10163	639	23	1		1	MYO1B	2	192261187	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9127	192261187	50938186	3748	11899											
MYO1B	4430	broad.mit.edu	37	chr2	192265202	192265202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggacccaggtaggccCgagaccccaaggaaggcggt	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192265202	A	A	192265202	1	1	9	0	1	0	0	0	0	0	0	0	10163	667	23	1		1	MYO1B	2	192265202	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4015	192265202	50934171	3749	11900											
MYO1B	4430	broad.mit.edu	37	chr2	192275892	192275892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaagaaggctttataccCatctaggtattatggctttg	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192275892	A	A	192275892	3	1	9	1	0	0	0	0	1	0	0	0	10163	594	21	2	2969	2	MYO1B	2	192275892	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10690	192275892	50923481	3750	11901											
TMEFF2	23671	broad.mit.edu	37	chr2	192815006	192815006	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgtagtccaagctctcGgtagtccagccactgtgaaa	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192815006	T	T	192815006	1	4	9	0	1	0	0	0	0	0	0	0	16137	1131	39	1		1	TMEFF2	2	192815006	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	539114	192815006	50384367	3751	11902											
SLC39A10	57181	broad.mit.edu	37	chr2	196545124	196545124	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattttggcagttcaagagGgaaagcattttcactcacat	8	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196545124	T	T	196545124	4	4	9	1	0	0	0	0	0	1	0	0	14727	1233	43	2	360	2	SLC39A10	2	196545124	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3730118	196545124	46654249	3752	11903											
DNAH7	56171	broad.mit.edu	37	chr2	196620932	196620932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcttgggtaggatttaccCatccacatttctggaatttt	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196620932	A	A	196620932	3	1	9	1	0	0	0	0	1	0	0	0	4646	594	21	2	579	2	DNAH7	2	196620932	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75808	196620932	46578441	3753	11904											
DNAH7	56171	broad.mit.edu	37	chr2	196636497	196636497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgagtataagttgttgGgtacctcctcatggcagcct	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196636497	T	T	196636497	3	4	9	1	0	0	0	0	1	0	0	0	4646	1232	43	2	774	2	DNAH7	2	196636497	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15565	196636497	46562876	3754	11905											
DNAH7	56171	broad.mit.edu	37	chr2	196659102	196659102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactccggatcagagatcGggtccatgaggtatgatcga	13	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196659102	T	T	196659102	3	4	9	1	0	0	0	0	1	0	0	0	4646	1116	39	1	1434	1	DNAH7	2	196659102	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22605	196659102	46540271	3755	11906											
DNAH7	56171	broad.mit.edu	37	chr2	196659135	196659135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcgaatgatattagccCgtaaaccttttggtgcttca	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196659135	A	A	196659135	3	1	9	1	0	0	0	0	1	0	0	0	4646	652	23	1	1467	1	DNAH7	2	196659135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	196659135	46540238	3756	11907											
DNAH7	56171	broad.mit.edu	37	chr2	196689021	196689021	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaggatttcttaacttGgtagtaatatagaagcggaa	10	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196689021	T	T	196689021	2	4	9	1	0	0	0	0	0	0	0	1	4646	1335	47	2		2	DNAH7	2	196689021	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29886	196689021	46510352	3757	11908											
DNAH7	56171	broad.mit.edu	37	chr2	196720499	196720499	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattcttagttacgataactGagaatttgtccatctttttc	5	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196720499	T	T	196720499	1	4	9	0	1	0	0	0	0	0	0	0	4646	1305	45	3		3	DNAH7	2	196720499	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31478	196720499	46478874	3758	11909											
DNAH7	56171	broad.mit.edu	37	chr2	196729048	196729048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttgcttggttttatccCgctggcgatctaactgacgc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196729048	A	A	196729048	3	1	9	1	0	0	0	0	1	0	0	0	4646	652	23	1	4843	1	DNAH7	2	196729048	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8549	196729048	46470325	3759	11910											
DNAH7	56171	broad.mit.edu	37	chr2	196737054	196737054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaacaccttgaatgacacGggagaaatcacggaggttga	11	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196737054	T	T	196737054	3	4	9	1	0	0	0	0	1	0	0	0	4646	1116	39	1	5625	1	DNAH7	2	196737054	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8006	196737054	46462319	3760	11911											
DNAH7	56171	broad.mit.edu	37	chr2	196746569	196746569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctacaaatattgaagGcttttgatgggtggtcagca	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196746569	T	T	196746569	3	4	9	1	0	0	0	0	1	0	0	0	4646	1203	42	3	6283	3	DNAH7	2	196746569	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9515	196746569	46452804	3761	11912											
DNAH7	56171	broad.mit.edu	37	chr2	196865545	196865545	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcaggttcaaacttaatGgtgtcattatcaagaatcag	7	7	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196865545	T	T	196865545	2	4	9	1	0	0	0	0	0	0	0	1	4646	1335	47	2		2	DNAH7	2	196865545	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	118976	196865545	46333828	3762	11913											
DNAH7	56171	broad.mit.edu	37	chr2	196912157	196912157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgatttggaagtagatggtCcaacataactatcatcaact	7	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196912157	A	A	196912157	3	1	9	1	0	0	0	0	1	0	0	0	4646	855	30	3	12001	3	DNAH7	2	196912157	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46612	196912157	46287216	3763	11914											
HECW2	57520	broad.mit.edu	37	chr2	197106886	197106886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtttggcttcgaaatccCgcttgtaaggggctggagcc	13	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197106886	A	A	197106886	3	1	9	1	0	0	0	0	1	0	0	0	7110	652	23	1	1186	1	HECW2	2	197106886	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	194729	197106886	46092487	3764	11915											
HECW2	57520	broad.mit.edu	37	chr2	197189763	197189763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagaccgtctctcctgccCgtggtgggcacaggtgggga	16	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197189763	A	A	197189763	3	1	9	1	0	0	0	0	1	0	0	0	7110	652	23	1	4132	1	HECW2	2	197189763	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82877	197189763	46009610	3765	11916											
GTF3C3	9330	broad.mit.edu	37	chr2	197641249	197641249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccagctgctgctgaaGggtagaaagtgaaatccttg	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197641249	T	T	197641249	3	4	9	1	0	0	0	0	1	0	0	0	6939	1000	35	2	1197	2	GTF3C3	2	197641249	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	451486	197641249	45558124	3766	11917											
PGAP1	80055	broad.mit.edu	37	chr2	197784829	197784829	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctccataaagatacaactCatatgcgggatagcgttttg	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197784829	A	A	197784829	4	1	9	1	0	0	0	0	0	1	0	0	11872	835	29	3	2679	3	PGAP1	2	197784829	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143580	197784829	45414544	3767	11918											
ANKRD44	91526	broad.mit.edu	37	chr2	197870559	197870559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtgcaagggcgtcctccCtctggaatctttacagagaa	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197870559	A	A	197870559	3	1	9	1	0	0	0	0	1	0	0	0	672	681	24	2	652	2	ANKRD44	2	197870559	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85730	197870559	45328814	3768	11919											
ANKRD44	91526	broad.mit.edu	37	chr2	197878372	197878372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcggcctttctcatccCtgatgtccaggtccaccaac	8	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197878372	A	A	197878372	3	1	9	1	0	0	0	0	1	0	0	0	672	681	24	2	1083	2	ANKRD44	2	197878372	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7813	197878372	45321001	3769	11920											
ANKRD44	91526	broad.mit.edu	37	chr2	197964625	197964625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatggagaggagtgttgcCgtccttatccacacagtcaa	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197964625	A	A	197964625	3	1	9	1	0	0	0	0	1	0	0	0	672	652	23	1	1887	1	ANKRD44	2	197964625	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86253	197964625	45234748	3770	11921											
SF3B1	23451	broad.mit.edu	37	chr2	198267377	198267377	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcttaataccagtgtgtctCgcttgccaggacttcttgct	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198267377	A	A	198267377	2	1	9	1	0	0	0	0	0	0	0	1	14262	871	31	3		3	SF3B1	2	198267377	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	302752	198267377	44931996	3771	11922											
SF3B1	23451	broad.mit.edu	37	chr2	198274415	198274415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttatacgtgtccacccaGgaataaacagaacacatttc	5	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198274415	T	T	198274415	1	4	9	0	1	0	0	0	0	0	0	0	14262	1015	35	2		2	SF3B1	2	198274415	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7038	198274415	44924958	3772	11923											
SF3B1	23451	broad.mit.edu	37	chr2	198274482	198274482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccacacacccatactcCactagaagtacctctctctg	3	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198274482	A	A	198274482	1	1	9	0	1	0	0	0	0	0	0	0	14262	609	21	2		2	SF3B1	2	198274482	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	67	198274482	44924891	3773	11924											
SF3B1	23451	broad.mit.edu	37	chr2	198274507	198274507	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtacctctctctgttttGggggtttcatcccatctgtt	9	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198274507	T	T	198274507	2	4	9	1	0	0	0	0	0	0	0	1	14262	1335	47	2		2	SF3B1	2	198274507	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	198274507	44924866	3774	11925											
SF3B1	23451	broad.mit.edu	37	chr2	198281495	198281495	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaacttgatagttttttGggagtggcaccaggagtctg	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198281495	T	T	198281495	2	4	9	1	0	0	0	0	0	0	0	1	14262	1335	47	2		2	SF3B1	2	198281495	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6988	198281495	44917878	3775	11926											
COQ10B	80219	broad.mit.edu	37	chr2	198327494	198327494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtttttaaatattcttcCatatattaactttgtcaaat	3	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198327494	A	A	198327494	1	1	9	0	1	0	0	0	0	0	0	0	3776	609	21	2		2	COQ10B	2	198327494	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45999	198327494	44871879	3776	11927											
HSPD1	3329	broad.mit.edu	37	chr2	198353209	198353209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttcaacatcacttgtccCaccaacctaaagacgaaaag	4	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198353209	A	A	198353209	3	1	9	1	0	0	0	0	1	0	0	0	7498	594	21	2	511	2	HSPD1	2	198353209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25715	198353209	44846164	3777	11928											
HSPD1	3329	broad.mit.edu	37	chr2	198363502	198363502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatctttggcataagccCgagtgagatgaggagccagt	12	8	1	2	rs11551350		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198363502	A	A	198363502	3	1	9	1	0	0	0	0	1	0	0	0	7498	652	23	1	1694	1	HSPD1	2	198363502	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10293	198363502	44835871	3778	11929											
HSPE1	3336	broad.mit.edu	37	chr2	198367815	198367815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagataaagttcttctccCagaatatggaggcaccaaag	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198367815	A	A	198367815	3	1	9	1	0	0	0	0	1	0	0	0	7499	594	21	2	231	2	HSPE1	2	198367815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4313	198367815	44831558	3779	11930											
RFTN2	130132	broad.mit.edu	37	chr2	198482645	198482645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatttaggcaaatgttccCctgtgaggaagagggtacaa	12	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198482645	A	A	198482645	3	1	9	1	0	0	0	0	1	0	0	0	13367	637	22	2	592	2	RFTN2	2	198482645	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114830	198482645	44716728	3780	11931											
RFTN2	130132	broad.mit.edu	37	chr2	198540180	198540180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttctaagtccgcacccCatggcaaaatctgtaaggaa	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198540180	A	A	198540180	3	1	9	1	0	0	0	0	1	0	0	0	13367	594	21	2	1538	2	RFTN2	2	198540180	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57535	198540180	44659193	3781	11932											
MARS2	92935	broad.mit.edu	37	chr2	198571532	198571532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccactatgataactttcGgatatataaggctctggagg	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198571532	T	T	198571532	3	4	9	1	0	0	0	0	1	0	0	0	9409	1116	39	1	1405	1	MARS2	2	198571532	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31352	198571532	44627841	3782	11933											
PLCL1	5334	broad.mit.edu	37	chr2	198948757	198948757	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagactggggaaaaacacGgaaacatttagaaacaatgg	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198948757	T	T	198948757	2	4	9	1	0	0	0	0	0	0	0	1	12134	1103	39	1		1	PLCL1	2	198948757	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	377225	198948757	44250616	3783	11934											
PLCL1	5334	broad.mit.edu	37	chr2	198953519	198953519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacttttctgtaaacctGggagtgctggcggtgatgtg	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198953519	T	T	198953519	1	4	9	0	1	0	0	0	0	0	0	0	12134	1363	47	2		2	PLCL1	2	198953519	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4762	198953519	44245854	3784	11935											
PLCL1	5334	broad.mit.edu	37	chr2	198953531	198953531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaacctgggagtgctggcGgtgatgtgtcaggtggtcag	18	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198953531	T	T	198953531	1	4	9	0	1	0	0	0	0	0	0	0	12134	1131	39	1		1	PLCL1	2	198953531	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	198953531	44245842	3785	11936											
PLCL1	5334	broad.mit.edu	37	chr2	199011362	199011362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttagaaaagaaccttggGttaaaccctggaaaagtgag	11	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	199011362	T	T	199011362	1	4	9	0	1	0	0	0	0	0	0	0	12134	1276	44	3		3	PLCL1	2	199011362	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57831	199011362	44188011	3786	11937											
SATB2	23314	broad.mit.edu	37	chr2	200137048	200137048	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcgttctcctctgactcGgtcagcagctcctcgtcctt	8	16	3	1	rs143484322		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200137048	T	T	200137048	2	4	9	1	0	0	0	0	0	0	0	1	13966	1103	39	1		1	SATB2	2	200137048	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1125686	200137048	43062325	3787	11938											
C2orf60	129450	broad.mit.edu	37	chr2	200797877	200797877	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatattcctctggtaactcGgccagtgttttcaaggctct	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200797877	T	T	200797877	2	4	9	1	0	0	0	0	0	0	0	1	2201	1103	39	1		1	C2orf60	2	200797877	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	660829	200797877	42401496	3788	11939											
C2orf47	79568	broad.mit.edu	37	chr2	200820956	200820956	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcatcacagagttctcCgagggagcgaagcaggtttg	13	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200820956	A	A	200820956	2	1	9	1	0	0	0	0	0	0	0	1	2191	639	23	1		1	C2orf47	2	200820956	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23079	200820956	42378417	3789	11940											
KCTD18	130535	broad.mit.edu	37	chr2	201354980	201354980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcagctttatcaccCgctggggtgtaggcttcttg	10	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201354980	A	A	201354980	3	1	9	1	0	0	0	0	1	0	0	0	8175	652	23	1	160	1	KCTD18	2	201354980	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	534024	201354980	41844393	3790	11941											
SGOL2	151246	broad.mit.edu	37	chr2	201436492	201436492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaactaaagaaaatgaccCttcaaactggctttgaacaa	6	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201436492	A	A	201436492	3	1	9	1	0	0	0	0	1	0	0	0	14330	681	24	2	1445	2	SGOL2	2	201436492	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81512	201436492	41762881	3791	11942											
AOX1	316	broad.mit.edu	37	chr2	201469487	201469487	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgatgtggttttccccCgtgaccctgaaggaactgct	11	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201469487	A	A	201469487	2	1	9	1	0	0	0	0	0	0	0	1	731	639	23	1		1	AOX1	2	201469487	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32995	201469487	41729886	3792	11943											
AOX1	316	broad.mit.edu	37	chr2	201476069	201476069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagtttatttaacagacCaaacagatcccagggaaagt	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201476069	A	A	201476069	1	1	9	0	1	0	0	0	0	0	0	0	731	609	21	2		2	AOX1	2	201476069	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6582	201476069	41723304	3793	11944											
AOX1	316	broad.mit.edu	37	chr2	201476209	201476209	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcagtgaacatcccctactCaaggaaggtgagaacatccc	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201476209	A	A	201476209	4	1	9	1	0	0	0	0	0	1	0	0	731	838	29	3	1306	3	AOX1	2	201476209	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140	201476209	41723164	3794	11945											
AOX1	316	broad.mit.edu	37	chr2	201485876	201485876	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagctctcagcatgccCggtgtggtggacatcatgac	12	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201485876	A	A	201485876	2	1	9	1	0	0	0	0	0	0	0	1	731	639	23	1		1	AOX1	2	201485876	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9667	201485876	41713497	3795	11946											
CLK1	1195	broad.mit.edu	37	chr2	201726536	201726536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccattttccataatccCaatccttgtcatcccaatca	1	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201726536	A	A	201726536	3	1	9	1	0	0	0	0	1	0	0	0	3568	595	21	2	1452	2	CLK1	2	201726536	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	240660	201726536	41472837	3796	11947											
PPIL3	53938	broad.mit.edu	37	chr2	201736131	201736131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatagctactgagcaaatGggttggcatgaatagttatg	11	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201736131	T	T	201736131	3	4	9	1	0	0	0	0	1	0	0	0	12429	1348	47	2	16	2	PPIL3	2	201736131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9595	201736131	41463242	3797	11948											
ORC2L	4999	broad.mit.edu	37	chr2	201775999	201775999	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggtacaacccttccatgGgagattcaagaataaaggaa	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201775999	C	C	201775999	1	2	9	0	1	0	0	0	0	0	0	0	11356	1247	43	4		4	ORC2L	2	201775999	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	39868	201775999	41423374	3798	11949											
ORC2L	4999	broad.mit.edu	37	chr2	201785752	201785752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcaatggatgctataaGgtaaatgttatgcaaagatg	12	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201785752	T	T	201785752	3	4	9	1	0	0	0	0	1	0	0	0	11356	1000	35	2	495	2	ORC2L	2	201785752	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9753	201785752	41413621	3799	11950											
ORC2L	4999	broad.mit.edu	37	chr2	201822097	201822097	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctgctactagcagaaacGagtgtatatttcaccccctc	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201822097	T	T	201822097	1	4	9	0	1	0	0	0	0	0	0	0	11356	1073	37	3		3	ORC2L	2	201822097	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36345	201822097	41377276	3800	11951											
CFLAR	8837	broad.mit.edu	37	chr2	201994722	201994722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccttctggatattttacGggaaagaggtaagctgtctg	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201994722	T	T	201994722	3	4	9	1	0	0	0	0	1	0	0	0	3322	1116	39	1	136	1	CFLAR	2	201994722	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	172625	201994722	41204651	3801	11952											
CASP10	843	broad.mit.edu	37	chr2	202052414	202052414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctttatttgtcattttGggtgtgtgtcttagaaacct	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202052414	T	T	202052414	1	4	9	0	1	0	0	0	0	0	0	0	2695	1363	47	2		2	CASP10	2	202052414	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57692	202052414	41146959	3802	11953											
CASP10	843	broad.mit.edu	37	chr2	202074282	202074282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctgaagaaattggtccCaaggtgagagctcttttttt	9	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202074282	A	A	202074282	3	1	9	1	0	0	0	0	1	0	0	0	2695	594	21	2	1442	2	CASP10	2	202074282	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21868	202074282	41125091	3803	11954											
ALS2CR12	130540	broad.mit.edu	37	chr2	202173977	202173977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcataaatactgtcctgGggaggtacaaaggcaccatg	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202173977	T	T	202173977	1	4	9	0	1	0	0	0	0	0	0	0	553	1247	43	2		2	ALS2CR12	2	202173977	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	99695	202173977	41025396	3804	11955											
ALS2CR12	130540	broad.mit.edu	37	chr2	202208901	202208901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcactcaccaatttctGggcagactggtggtctctgt	11	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202208901	T	T	202208901	3	4	9	1	0	0	0	0	1	0	0	0	553	1357	47	2	923	2	ALS2CR12	2	202208901	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34924	202208901	40990472	3805	11956											
TRAK2	66008	broad.mit.edu	37	chr2	202251161	202251161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggatcaaggatggttccCaagtttggttgagcaagctg	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202251161	A	A	202251161	3	1	9	1	0	0	0	0	1	0	0	0	16574	593	21	2	1013	2	TRAK2	2	202251161	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42260	202251161	40948212	3806	11957											
TRAK2	66008	broad.mit.edu	37	chr2	202251196	202251196	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagctgctgccagtgatacaGagtttgtgatcctgaatatg	11	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202251196	T	T	202251196	3	4	9	1	0	0	0	0	1	0	0	0	16574	933	33	3	1048	3	TRAK2	2	202251196	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	202251196	40948177	3807	11958											
TRAK2	66008	broad.mit.edu	37	chr2	202275520	202275520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaactttgggtttctgaGggccaaagagattattaagg	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202275520	T	T	202275520	1	4	9	0	1	0	0	0	0	0	0	0	16574	1015	35	2		2	TRAK2	2	202275520	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24324	202275520	40923853	3808	11959											
STRADB	55437	broad.mit.edu	37	chr2	202337727	202337727	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttgcacggcatactccCacaggaacactggtaactat	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202337727	A	A	202337727	2	1	9	1	0	0	0	0	0	0	0	1	15443	581	21	2		2	STRADB	2	202337727	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62207	202337727	40861646	3809	11960											
ALS2CR11	151254	broad.mit.edu	37	chr2	202352480	202352480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgttgcttgttaacctccGgagcagtatatggtcttgca	10	10	1	0	rs72939119	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202352480	T	T	202352480	3	4	9	1	0	0	0	0	1	0	0	0	552	1116	39	1	148	1	ALS2CR11	2	202352480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14753	202352480	40846893	3810	11961											
ALS2CR11	151254	broad.mit.edu	37	chr2	202436669	202436669	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaaaacacttacgtcacGggatctgttctttctggagg	9	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202436669	T	T	202436669	2	4	9	1	0	0	0	0	0	0	0	1	552	1103	39	1		1	ALS2CR11	2	202436669	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	84189	202436669	40762704	3811	11962											
ALS2CR11	151254	broad.mit.edu	37	chr2	202469415	202469415	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactctttaagagtttttctCagcatctacaatgtaaataa	5	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202469415	A	A	202469415	2	1	9	1	0	0	0	0	0	0	0	1	552	813	29	3		3	ALS2CR11	2	202469415	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32746	202469415	40729958	3812	11963											
ALS2	57679	broad.mit.edu	37	chr2	202580487	202580487	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctgggccctcacagccCagttggcgccaacattcgtc	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202580487	A	A	202580487	2	1	9	1	0	0	0	0	0	0	0	1	550	581	21	2		2	ALS2	2	202580487	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	111072	202580487	40618886	3813	11964											
ALS2	57679	broad.mit.edu	37	chr2	202590157	202590157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgttcattgccttgtttGggattctgtattctccatac	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202590157	T	T	202590157	3	4	9	1	0	0	0	0	1	0	0	0	550	1348	47	2	1764	2	ALS2	2	202590157	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9670	202590157	40609216	3814	11965											
ALS2	57679	broad.mit.edu	37	chr2	202593775	202593775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaactggcatggcttacCgtcatttttccggggaaggt	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202593775	A	A	202593775	2	1	9	1	0	0	0	0	0	0	0	1	550	666	23	1		1	ALS2	2	202593775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3618	202593775	40605598	3815	11966											
CDK15	65061	broad.mit.edu	37	chr2	202737010	202737010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttcccagaatggttccCactgcctacgcctcgaagcc	8	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202737010	A	A	202737010	3	1	9	1	0	0	0	0	1	0	0	0	3161	594	21	2	904	2	CDK15	2	202737010	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143235	202737010	40462363	3816	11967											
SUMO1	7341	broad.mit.edu	37	chr2	203072036	203072036	+	Missense_Mutation	SNP	C	A	A													tcaatcacatcttcttcctcCattcccagctgtaagaggaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203072036	A	A	203072036	3	1	9	1	0	0	0	0	1	0	0	0	15505	594	21	2	63	2	SUMO1	2	203072036	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	335026	203072036	40127337	3817	11968	72	2									
SUMO1	7341	broad.mit.edu	37	chr2	203072042	203072042	+	Silent	SNP	C	A	A													acatcttcttcctccattccCagctgtaagaggaaagaaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203072042	A	A	203072042	2	1	9	1	0	0	0	0	0	0	0	1	15505	581	21	2		2	SUMO1	2	203072042	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6	203072042	40127331	3818	11969	72	2									
NOP58	51602	broad.mit.edu	37	chr2	203160434	203160434	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaagcatgcagcttctacCgttcagattcttggagctga	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203160434	A	A	203160434	2	1	9	1	0	0	0	0	0	0	0	1	10635	639	23	1		1	NOP58	2	203160434	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88392	203160434	40038939	3819	11970											
NOP58	51602	broad.mit.edu	37	chr2	203160487	203160487	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagccctcaaatctagacGggatacccctaagtatggtc	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203160487	T	T	203160487	3	4	9	1	0	0	0	0	1	0	0	0	10635	1116	39	1	1036	1	NOP58	2	203160487	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	203160487	40038886	3820	11971											
NOP58	51602	broad.mit.edu	37	chr2	203162141	203162141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaaccgttttggctatcCgttatgatgcttttggtgag	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203162141	A	A	203162141	3	1	9	1	0	0	0	0	1	0	0	0	10635	652	23	1	1153	1	NOP58	2	203162141	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1654	203162141	40037232	3821	11972											
BMPR2	659	broad.mit.edu	37	chr2	203420626	203420626	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagatctatcctctcccCaagcagcagaaccttcccaa	4	17	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203420626	A	A	203420626	2	1	9	1	0	0	0	0	0	0	0	1	1477	581	21	2		2	BMPR2	2	203420626	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	258485	203420626	39778747	3822	11973											
FAM117B	150864	broad.mit.edu	37	chr2	203591028	203591028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacagcagtcggcatcatcGagataaagaaagacagtctc	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203591028	T	T	203591028	3	4	9	1	0	0	0	0	1	0	0	0	5456	1058	37	3	916	3	FAM117B	2	203591028	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	170402	203591028	39608345	3823	11974											
ICA1L	130026	broad.mit.edu	37	chr2	203686150	203686150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagcttgagttgcatccCgttctgcttgaaattttaaa	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203686150	A	A	203686150	3	1	9	1	0	0	0	0	1	0	0	0	7548	652	23	1	1198	1	ICA1L	2	203686150	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95122	203686150	39513223	3824	11975											
ALS2CR8	79800	broad.mit.edu	37	chr2	203839189	203839189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgagaaatggagatacGgtatataactcagagattat	9	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203839189	T	T	203839189	2	4	9	1	0	0	0	0	0	0	0	1	555	1103	39	1		1	ALS2CR8	2	203839189	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	153039	203839189	39360184	3825	11976											
ALS2CR8	79800	broad.mit.edu	37	chr2	203848281	203848281	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaagttaaacaagaaccCaaagaaccagcattgtctat	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203848281	A	A	203848281	2	1	9	1	0	0	0	0	0	0	0	1	555	581	21	2		2	ALS2CR8	2	203848281	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9092	203848281	39351092	3826	11977											
NBEAL1	65065	broad.mit.edu	37	chr2	204016237	204016237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgtagagaattattccCgcatgagacttaagctggta	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204016237	A	A	204016237	3	1	9	1	0	0	0	0	1	0	0	0	10282	652	23	1	5555	1	NBEAL1	2	204016237	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	167956	204016237	39183136	3827	11978											
NBEAL1	65065	broad.mit.edu	37	chr2	204048059	204048059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaatgatgtcattctccCgaaatgggctaaatcagctg	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204048059	A	A	204048059	3	1	9	1	0	0	0	0	1	0	0	0	10282	652	23	1	6732	1	NBEAL1	2	204048059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31822	204048059	39151314	3828	11979											
NBEAL1	65065	broad.mit.edu	37	chr2	204055990	204055990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtgctgtggaatgccCagccagttaagcacaaagga	13	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204055990	A	A	204055990	1	1	9	0	1	0	0	0	0	0	0	0	10282	609	21	2		2	NBEAL1	2	204055990	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7931	204055990	39143383	3829	11980											
CYP20A1	57404	broad.mit.edu	37	chr2	204111559	204111559	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagagatatgggcctgtGgtctccttctggtttggcag	14	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204111559	T	T	204111559	2	4	9	1	0	0	0	0	0	0	0	1	4185	1335	47	2		2	CYP20A1	2	204111559	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55569	204111559	39087814	3830	11981											
RAPH1	65059	broad.mit.edu	37	chr2	204304258	204304258	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgatatatgactgcctcCgtaaccagccttctgttgat	8	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204304258	A	A	204304258	4	1	9	1	0	0	0	0	0	1	0	0	13158	661	23	1	101	1	RAPH1	2	204304258	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	192699	204304258	38895115	3831	11982											
CD28	940	broad.mit.edu	37	chr2	204571369	204571369	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagttcccctcacacttcGggttcctcggggaggagggg	14	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204571369	T	T	204571369	1	4	9	0	1	0	0	0	0	0	0	0	3023	1131	39	1		1	CD28	2	204571369	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	267111	204571369	38628004	3832	11983											
PARD3B	117583	broad.mit.edu	37	chr2	205550958	205550958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatacagatggaggaatcCtggatccagatgatgtcttg	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205550958	A	A	205550958	3	1	9	1	0	0	0	0	1	0	0	0	11538	680	24	2	181	2	PARD3B	2	205550958	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	979589	205550958	37648415	3833	11984											
PARD3B	117583	broad.mit.edu	37	chr2	205983695	205983695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaacagcaggtccaagcGggagggactatttcacgaaa	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205983695	T	T	205983695	3	4	9	1	0	0	0	0	1	0	0	0	11538	1116	39	1	757	1	PARD3B	2	205983695	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	432737	205983695	37215678	3834	11985											
PARD3B	117583	broad.mit.edu	37	chr2	205986385	205986385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgcttcctccacaaaacCgtgaacagtatgaaaagtca	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205986385	A	A	205986385	3	1	9	1	0	0	0	0	1	0	0	0	11538	652	23	1	907	1	PARD3B	2	205986385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2690	205986385	37212988	3835	11986											
PARD3B	117583	broad.mit.edu	37	chr2	205989106	205989106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcttccatacatggtccCggtcccatttttgtaaaaaa	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205989106	A	A	205989106	2	1	9	1	0	0	0	0	0	0	0	1	11538	639	23	1		1	PARD3B	2	205989106	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2721	205989106	37210267	3836	11987											
PARD3B	117583	broad.mit.edu	37	chr2	205990429	205990429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatcgctggtcattgccCgccaagaaggacattttctg	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205990429	A	A	205990429	3	1	9	1	0	0	0	0	1	0	0	0	11538	652	23	1	1440	1	PARD3B	2	205990429	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1323	205990429	37208944	3837	11988											
PARD3B	117583	broad.mit.edu	37	chr2	206364632	206364632	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtagtggccgtcctacGggtggaagcactgaccgtat	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206364632	T	T	206364632	2	4	9	1	0	0	0	0	0	0	0	1	11538	1103	39	1		1	PARD3B	2	206364632	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	374203	206364632	36834741	3838	11989											
PARD3B	117583	broad.mit.edu	37	chr2	206418124	206418124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcagtacgcatccttacCcaggtagatcacggagaggt	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206418124	A	A	206418124	3	1	9	1	0	0	0	0	1	0	0	0	11538	623	22	2	3343	2	PARD3B	2	206418124	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53492	206418124	36781249	3839	11990											
PARD3B	117583	broad.mit.edu	37	chr2	206480189	206480189	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctttccaggggaggaccCgcagatcctgtagactatct	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206480189	A	A	206480189	2	1	9	1	0	0	0	0	0	0	0	1	11538	639	23	1		1	PARD3B	2	206480189	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62065	206480189	36719184	3840	11991											
NRP2	8828	broad.mit.edu	37	chr2	206562271	206562271	+	Missense_Mutation	SNP	C	A	A													gttgatttctctttcagaccCaccgtgcggaggtcgtttga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206562271	A	A	206562271	3	1	9	1	0	0	0	0	1	0	0	0	10756	594	21	2	83	2	NRP2	2	206562271	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82082	206562271	36637102	3841	11992	73	2									
NRP2	8828	broad.mit.edu	37	chr2	206562279	206562279	+	Nonsense_Mutation	SNP	G	T	T													ctctttcagacccaccgtgcGgaggtcgtttgaattccaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206562279	T	T	206562279	4	4	9	1	0	0	0	0	0	1	0	0	10756	1117	39	1	91	1	NRP2	2	206562279	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8	206562279	36637094	3842	11993	73	2									
NRP2	8828	broad.mit.edu	37	chr2	206607865	206607865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctcccttcttatagcGggtggtccctggttagcagg	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206607865	T	T	206607865	1	4	9	0	1	0	0	0	0	0	0	0	10756	1131	39	1		1	NRP2	2	206607865	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45586	206607865	36591508	3843	11994											
NRP2	8828	broad.mit.edu	37	chr2	206607951	206607951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgctccaacatgctggGgatgctctcaggcctcattg	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206607951	T	T	206607951	3	4	9	1	0	0	0	0	1	0	0	0	10756	1232	43	2	1350	2	NRP2	2	206607951	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86	206607951	36591422	3844	11995											
NRP2	8828	broad.mit.edu	37	chr2	206628355	206628355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacactggtgtctttccCgagtgtttatggagaacctc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206628355	A	A	206628355	1	1	9	0	1	0	0	0	0	0	0	0	10756	667	23	1		1	NRP2	2	206628355	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20404	206628355	36571018	3845	11996											
INO80D	54891	broad.mit.edu	37	chr2	206869637	206869637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagagtacgatgttgtgtGgggagaggtgatatggtcac	16	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206869637	T	T	206869637	3	4	9	1	0	0	0	0	1	0	0	0	7819	1348	47	2	548	2	INO80D	2	206869637	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	241282	206869637	36329736	3846	11997											
NDUFS1	4719	broad.mit.edu	37	chr2	207008756	207008756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttaccattccagctacgcGagagagcgcatcctcccaag	8	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207008756	T	T	207008756	3	4	9	1	0	0	0	0	1	0	0	0	10386	1058	37	3	1250	3	NDUFS1	2	207008756	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139119	207008756	36190617	3847	11998											
NDUFS1	4719	broad.mit.edu	37	chr2	207008820	207008820	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttctgaccattggctcGgtaagtctttgacgttttag	9	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207008820	T	T	207008820	2	4	9	1	0	0	0	0	0	0	0	1	10386	1103	39	1		1	NDUFS1	2	207008820	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	64	207008820	36190553	3848	11999											
EEF1B2	1933	broad.mit.edu	37	chr2	207025242	207025242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaattaatgtgatgcatacGgtatttattatttattcgct	6	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207025242	T	T	207025242	1	4	9	0	1	0	0	0	0	0	0	0	4965	1131	39	1		1	EEF1B2	2	207025242	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16422	207025242	36174131	3849	12000											
GPR1	2825	broad.mit.edu	37	chr2	207041783	207041783	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcttccacttgaacccCgtgaaccaaatgacgatggc	8	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207041783	A	A	207041783	2	1	9	1	0	0	0	0	0	0	0	1	6686	639	23	1		1	GPR1	2	207041783	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16541	207041783	36157590	3850	12001											
ZDBF2	57683	broad.mit.edu	37	chr2	207169659	207169659	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaggtttcagttcgaccatCagttattcaaaaactggaga	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207169659	T	T	207169659	3	4	9	1	0	0	0	0	1	0	0	0	17725	838	29	4	417	4	ZDBF2	2	207169659	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127876	207169659	36029714	3851	12002											
ZDBF2	57683	broad.mit.edu	37	chr2	207171913	207171913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcagtgactaattctccCgaagtagctgttaaaaagct	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207171913	A	A	207171913	2	1	9	1	0	0	0	0	0	0	0	1	17725	639	23	1		1	ZDBF2	2	207171913	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2254	207171913	36027460	3852	12003											
ZDBF2	57683	broad.mit.edu	37	chr2	207172903	207172903	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaccggctgagagaaacCgttaaagaaataagcctttg	11	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207172903	A	A	207172903	2	1	9	1	0	0	0	0	0	0	0	1	17725	639	23	1		1	ZDBF2	2	207172903	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	990	207172903	36026470	3853	12004											
ZDBF2	57683	broad.mit.edu	37	chr2	207175315	207175315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatattaaactgaaagaGggtgaaggccttcctttccc	8	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207175315	T	T	207175315	3	4	9	1	0	0	0	0	1	0	0	0	17725	991	35	2	6073	2	ZDBF2	2	207175315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2412	207175315	36024058	3854	12005											
ADAM23	8745	broad.mit.edu	37	chr2	207310190	207310190	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atattacatcaaccaagactCggaaagcccttatcacgttc	5	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207310190	A	A	207310190	4	1	9	1	0	0	0	0	0	1	0	0	245	893	31	3	380	3	ADAM23	2	207310190	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134875	207310190	35889183	3855	12006											
DYTN	391475	broad.mit.edu	37	chr2	207527609	207527609	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccatcacgatgtctatGgattgtgaaaaccttacctg	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207527609	T	T	207527609	1	4	9	0	1	0	0	0	0	0	0	0	4901	1363	47	2		2	DYTN	2	207527609	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	217419	207527609	35671764	3856	12007											
FASTKD2	22868	broad.mit.edu	37	chr2	207655335	207655335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagatctgcttattgtttGggttcaagccaccccagagg	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207655335	T	T	207655335	3	4	9	1	0	0	0	0	1	0	0	0	5743	1339	47	2	1976	2	FASTKD2	2	207655335	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127726	207655335	35544038	3857	12008											
FASTKD2	22868	broad.mit.edu	37	chr2	207655350	207655350	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgggttcaagccacccCagaggattccttgctatgaa	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207655350	A	A	207655350	2	1	9	1	0	0	0	0	0	0	0	1	5743	581	21	2		2	FASTKD2	2	207655350	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	207655350	35544023	3858	12009											
CPO	130749	broad.mit.edu	37	chr2	207823062	207823062	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcccaagaaaatcatttGgatggactgtggaattcacg	9	7	2	1	rs138166151	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207823062	T	T	207823062	3	4	9	1	0	0	0	0	1	0	0	0	3852	1357	47	2	319	2	CPO	2	207823062	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	167712	207823062	35376311	3859	12010											
CPO	130749	broad.mit.edu	37	chr2	207833930	207833930	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttcaagagattgggccCgagacattgggattcccttc	12	10	2	2	rs112868011	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207833930	A	A	207833930	2	1	9	1	0	0	0	0	0	0	0	1	3852	644	23	1		1	CPO	2	207833930	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10868	207833930	35365443	3860	12011											
KLF7	8609	broad.mit.edu	37	chr2	207988558	207988558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtataaactttccggcaccCgttaaactgacagcggtgaa	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207988558	A	A	207988558	3	1	9	1	0	0	0	0	1	0	0	0	8422	652	23	1	247	1	KLF7	2	207988558	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154628	207988558	35210815	3861	12012											
CCNYL1	151195	broad.mit.edu	37	chr2	208591598	208591598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagcaaccatttgaacCatgtaagtaaacagttggaa	10	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208591598	A	A	208591598	3	1	9	1	0	0	0	0	1	0	0	0	2967	594	21	2	338	2	CCNYL1	2	208591598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	603040	208591598	34607775	3862	12013											
CCNYL1	151195	broad.mit.edu	37	chr2	208618261	208618261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtgctctttcaaaggcGggaaccctttttaaaattgt	9	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208618261	T	T	208618261	1	4	9	0	1	0	0	0	0	0	0	0	2967	1131	39	1		1	CCNYL1	2	208618261	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26663	208618261	34581112	3863	12014											
PLEKHM3	389072	broad.mit.edu	37	chr2	208725957	208725957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatttaatgaccttgccCaagaatggagccagctttcc	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208725957	A	A	208725957	3	1	9	1	0	0	0	0	1	0	0	0	12177	593	21	2	313	2	PLEKHM3	2	208725957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107696	208725957	34473416	3864	12015											
CRYGD	1421	broad.mit.edu	37	chr2	208986579	208986579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttcattgaagcggaagcGgtcctgaagacaggagcagt	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208986579	T	T	208986579	3	4	9	1	0	0	0	0	1	0	0	0	3949	1116	39	1	185	1	CRYGD	2	208986579	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	260622	208986579	34212794	3865	12016											
CRYGC	1420	broad.mit.edu	37	chr2	208994428	208994428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaaggaagaatcgttcCgaattacattatttgctcct	7	9	0	1	rs151203716	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208994428	A	A	208994428	1	1	9	0	1	0	0	0	0	0	0	0	3948	667	23	1		1	CRYGC	2	208994428	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7849	208994428	34204945	3866	12017											
CRYGC	1420	broad.mit.edu	37	chr2	208994514	208994514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttctgctcaccttcccCatggctggttgacacggatg	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208994514	A	A	208994514	3	1	9	1	0	0	0	0	1	0	0	0	3948	594	21	2	533	2	CRYGC	2	208994514	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	208994514	34204859	3867	12018											
CRYGB	1419	broad.mit.edu	37	chr2	209010521	209010521	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggatgaggcagcaggagcGgatggagtcgctgaggccca	20	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209010521	A	A	209010521	3	1	9	1	0	0	0	0	1	0	0	0	3947	1116	39	4	306	4	CRYGB	2	209010521	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16007	209010521	34188852	3868	12019											
C2orf80	389073	broad.mit.edu	37	chr2	209036793	209036793	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagagagatgaaactcGgggaacctgaaaggaaaaca	14	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209036793	T	T	209036793	2	4	9	1	0	0	0	0	0	0	0	1	2219	1124	39	1		1	C2orf80	2	209036793	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26272	209036793	34162580	3869	12020											
C2orf80	389073	broad.mit.edu	37	chr2	209045487	209045487	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgatggtaccagaatcGgcagaagaatcagccccata	9	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209045487	T	T	209045487	2	4	9	1	0	0	0	0	0	0	0	1	2219	1103	39	1		1	C2orf80	2	209045487	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8694	209045487	34153886	3870	12021											
PIKFYVE	200576	broad.mit.edu	37	chr2	209150524	209150524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagacagtaattctattGgggaagacttgaatgctctt	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209150524	T	T	209150524	3	4	9	1	0	0	0	0	1	0	0	0	12019	1348	47	2	706	2	PIKFYVE	2	209150524	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	105037	209150524	34048849	3871	12022											
PIKFYVE	200576	broad.mit.edu	37	chr2	209185027	209185027	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctgttgaagtgttccattGagtatctctacagagaagaa	9	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209185027	T	T	209185027	4	4	9	1	0	0	0	0	0	1	0	0	12019	1291	45	3	2207	3	PIKFYVE	2	209185027	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34503	209185027	34014346	3872	12023											
PIKFYVE	200576	broad.mit.edu	37	chr2	209190375	209190375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaaaataaaaatcttcCgcaggctgttgcctctgtga	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209190375	A	A	209190375	3	1	9	1	0	0	0	0	1	0	0	0	12019	652	23	1	2925	1	PIKFYVE	2	209190375	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5348	209190375	34008998	3873	12024											
PIKFYVE	200576	broad.mit.edu	37	chr2	209190487	209190487	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgttgccactccctgtGgatgaccaacaagatgcttt	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209190487	T	T	209190487	2	4	9	1	0	0	0	0	0	0	0	1	12019	1335	47	2		2	PIKFYVE	2	209190487	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	112	209190487	34008886	3874	12025											
PIKFYVE	200576	broad.mit.edu	37	chr2	209214860	209214860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagggactacagttgagcCatctctattatttgagaatt	10	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209214860	A	A	209214860	1	1	9	0	1	0	0	0	0	0	0	0	12019	609	21	2		2	PIKFYVE	2	209214860	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24373	209214860	33984513	3875	12026											
PIKFYVE	200576	broad.mit.edu	37	chr2	209215632	209215632	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcatcaccctggcaggccCggggaggcaaatcaggagct	13	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209215632	A	A	209215632	2	1	9	1	0	0	0	0	0	0	0	1	12019	643	23	1		1	PIKFYVE	2	209215632	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	772	209215632	33983741	3876	12027											
PTH2R	5746	broad.mit.edu	37	chr2	209271759	209271759	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgcttcttcctacagcCgttccgggcatggccgggct	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209271759	A	A	209271759	1	1	9	0	1	0	0	0	0	0	0	0	12866	667	23	1		1	PTH2R	2	209271759	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	56127	209271759	33927614	3877	12028											
PTH2R	5746	broad.mit.edu	37	chr2	209307069	209307069	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatagtcccatatcatacatGagcatctcttcccttgcagc	5	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209307069	T	T	209307069	1	4	9	0	1	0	0	0	0	0	0	0	12866	1305	45	3		3	PTH2R	2	209307069	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35310	209307069	33892304	3878	12029											
PTH2R	5746	broad.mit.edu	37	chr2	209353827	209353827	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcactccttcactgggctCgggtgggagatccgcatgca	12	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209353827	T	T	209353827	2	4	9	1	0	0	0	0	0	0	0	1	12866	871	31	4		4	PTH2R	2	209353827	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	46758	209353827	33845546	3879	12030											
MAP2	4133	broad.mit.edu	37	chr2	210545513	210545513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcctccttctccaccccCatcacctgcctcagaacaga	4	20	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210545513	A	A	210545513	3	1	9	1	0	0	0	0	1	0	0	0	9327	594	21	2	426	2	MAP2	2	210545513	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1191686	210545513	32653860	3880	12031											
MAP2	4133	broad.mit.edu	37	chr2	210557337	210557337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgtttaaaaatcaaccCgattacttcagatttactta	3	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210557337	A	A	210557337	1	1	9	0	1	0	0	0	0	0	0	0	9327	667	23	1		1	MAP2	2	210557337	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11824	210557337	32642036	3881	12032											
MAP2	4133	broad.mit.edu	37	chr2	210559034	210559034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctagattccatagccCttggatttaactttggtcgg	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210559034	A	A	210559034	3	1	9	1	0	0	0	0	1	0	0	0	9327	681	24	2	2154	2	MAP2	2	210559034	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1697	210559034	32640339	3882	12033											
MAP2	4133	broad.mit.edu	37	chr2	210559081	210559081	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctttctcctctggcttcCgatattctaaccaacactag	5	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210559081	A	A	210559081	2	1	9	1	0	0	0	0	0	0	0	1	9327	639	23	1		1	MAP2	2	210559081	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	210559081	32640292	3883	12034											
MAP2	4133	broad.mit.edu	37	chr2	210565029	210565029	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaatcagctctggctccCagtgtatttaaacaggcaaa	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210565029	A	A	210565029	2	1	9	1	0	0	0	0	0	0	0	1	9327	581	21	2		2	MAP2	2	210565029	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5948	210565029	32634344	3884	12035											
MAP2	4133	broad.mit.edu	37	chr2	210569223	210569223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggtagcacaaagtcccCaagatacagctcagcctgcc	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210569223	A	A	210569223	1	1	9	0	1	0	0	0	0	0	0	0	9327	594	21	2		2	MAP2	2	210569223	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4194	210569223	32630150	3885	12036											
C2orf67	151050	broad.mit.edu	37	chr2	210887615	210887615	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgggggatccagaacaGggctttatttcctcccatct	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210887615	T	T	210887615	1	4	9	0	1	0	0	0	0	0	0	0	2208	1015	35	2		2	C2orf67	2	210887615	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	318392	210887615	32311758	3886	12037											
C2orf67	151050	broad.mit.edu	37	chr2	210889910	210889910	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatattttttgtgccttaGggagaagacttcatcagaaa	8	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210889910	T	T	210889910	3	4	9	1	0	0	0	0	1	0	0	0	2208	991	35	2	493	2	C2orf67	2	210889910	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2295	210889910	32309463	3887	12038											
LANCL1	10314	broad.mit.edu	37	chr2	211336594	211336595	+	Intron	DNP	GG	TT	TT													cagatgcaggaagcatttaaGggtgtaccattcagacagac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	211336595	TT	TT	211336594	1	4	9	0	1	0	0	0	0	0	0	0	8692	1015	35	2		2	LANCL1	2	211336594	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	446684	211336594	31862779	3888	12039											
CPS1	1373	broad.mit.edu	37	chr2	211454936	211454936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacccagctcttgcagaacCactaattcagaatgtcagaa	7	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211454936	A	A	211454936	3	1	9	1	0	0	0	0	1	0	0	0	3855	594	21	2	870	2	CPS1	2	211454936	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118342	211454936	31744437	3889	12040											
CPS1	1373	broad.mit.edu	37	chr2	211457667	211457667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaggtcaccccggggcCaatagacactgaggtacgtc	12	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211457667	A	A	211457667	3	1	9	1	0	0	0	0	1	0	0	0	3855	594	21	2	1215	2	CPS1	2	211457667	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2731	211457667	31741706	3890	12041											
CPS1	1373	broad.mit.edu	37	chr2	211464173	211464173	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgggcttaaagcaagcGgatactgtctactttcttcc	11	9	2	0	rs80261173	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211464173	T	T	211464173	2	4	9	1	0	0	0	0	0	0	0	1	3855	1103	39	1		1	CPS1	2	211464173	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6506	211464173	31735200	3891	12042											
CPS1	1373	broad.mit.edu	37	chr2	211476925	211476925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatagaaggtttcactcccCgtctcccaatgaacaaagaa	6	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211476925	A	A	211476925	3	1	9	1	0	0	0	0	1	0	0	0	3855	652	23	1	2576	1	CPS1	2	211476925	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12752	211476925	31722448	3892	12043											
CPS1	1373	broad.mit.edu	37	chr2	211507249	211507249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgctgtctctagtatcCgcacactgcgtcaacttggc	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211507249	A	A	211507249	3	1	9	1	0	0	0	0	1	0	0	0	3855	652	23	1	3121	1	CPS1	2	211507249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30324	211507249	31692124	3893	12044											
CPS1	1373	broad.mit.edu	37	chr2	211513307	211513307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaatgattcaaaaattGggagatacagaaatgcatgc	8	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211513307	T	T	211513307	1	4	9	0	1	0	0	0	0	0	0	0	3855	1363	47	2		2	CPS1	2	211513307	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6058	211513307	31686066	3894	12045											
ERBB4	2066	broad.mit.edu	37	chr2	212251643	212251643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctctcctcgtgggctcCgttctggggcaaacacggtg	13	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212251643	A	A	212251643	3	1	9	1	0	0	0	0	1	0	0	0	5251	652	23	1	518	1	ERBB4	2	212251643	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	738336	212251643	30947730	3895	12046											
ERBB4	2066	broad.mit.edu	37	chr2	212251696	212251696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctctgggtgctactgtcCtcttggacatggggtgccac	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212251696	A	A	212251696	3	1	9	1	0	0	0	0	1	0	0	0	5251	680	24	2	571	2	ERBB4	2	212251696	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	212251696	30947677	3896	12047											
ERBB4	2066	broad.mit.edu	37	chr2	212483886	212483886	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaaatgtgattgcctGggtgtctgtacttacatcca	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212483886	C	C	212483886	1	2	9	0	1	0	0	0	0	0	0	0	5251	1363	47	4		4	ERBB4	2	212483886	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	232190	212483886	30715487	3897	12048											
ERBB4	2066	broad.mit.edu	37	chr2	212570084	212570084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagacgttcagtttctctGggtctatggcttcaattgca	10	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212570084	T	T	212570084	3	4	9	1	0	0	0	0	1	0	0	0	5251	1348	47	2	2845	2	ERBB4	2	212570084	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86198	212570084	30629289	3898	12049											
IKZF2	22807	broad.mit.edu	37	chr2	213878453	213878453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatatatttctaatacatgGgaacttgccttttcctatta	4	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213878453	T	T	213878453	1	4	9	0	1	0	0	0	0	0	0	0	7685	1247	43	2		2	IKZF2	2	213878453	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1308369	213878453	29320920	3899	12050											
SPAG16	79582	broad.mit.edu	37	chr2	215274924	215274924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctagatcttaaatctgGggagattcacaaattgatgg	10	5	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215274924	T	T	215274924	3	4	9	1	0	0	0	0	1	0	0	0	15094	1232	43	2	1859	2	SPAG16	2	215274924	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1396471	215274924	27924449	3900	12051											
SPAG16	79582	broad.mit.edu	37	chr2	215274986	215274986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttgtgttttctcacgacGgggagattctcttttctgga	12	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215274986	T	T	215274986	3	4	9	1	0	0	0	0	1	0	0	0	15094	1116	39	1	1921	1	SPAG16	2	215274986	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62	215274986	27924387	3901	12052											
VWC2L	402117	broad.mit.edu	37	chr2	215440559	215440559	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaggacaaacttccaccCaatgatgagttcttaggaaa	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215440559	A	A	215440559	1	1	9	0	1	0	0	0	0	0	0	0	17371	609	21	2		2	VWC2L	2	215440559	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	165573	215440559	27758814	3902	12053											
ABCA12	26154	broad.mit.edu	37	chr2	215818762	215818762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagaaagttcaatcaaacCgtagccaaaacagaattgtg	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215818762	A	A	215818762	3	1	9	1	0	0	0	0	1	0	0	0	30	652	23	1	1364	1	ABCA12	2	215818762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	378203	215818762	27380611	3903	12054											
ABCA12	26154	broad.mit.edu	37	chr2	215848576	215848576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaggccccaaacagccCagttaacatggaactggaaa	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215848576	A	A	215848576	3	1	9	1	0	0	0	0	1	0	0	0	30	594	21	2	3710	2	ABCA12	2	215848576	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29814	215848576	27350797	3904	12055											
ABCA12	26154	broad.mit.edu	37	chr2	215855415	215855415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccactctgccattccaacGgttgacttaccatgaacact	5	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215855415	T	T	215855415	1	4	9	0	1	0	0	0	0	0	0	0	30	1131	39	1		1	ABCA12	2	215855415	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6839	215855415	27343958	3905	12056											
ABCA12	26154	broad.mit.edu	37	chr2	215865651	215865651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcggtcttgagactcatcCggatggtatattttatgaca	11	7	2	2	rs116481578	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215865651	A	A	215865651	3	1	9	1	0	0	0	0	1	0	0	0	30	652	23	1	4958	1	ABCA12	2	215865651	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10236	215865651	27333722	3906	12057											
ABCA12	26154	broad.mit.edu	37	chr2	215876355	215876355	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgtggtgtgttcattcGgttgcttctgtacattgcct	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215876355	T	T	215876355	2	4	9	1	0	0	0	0	0	0	0	1	30	1124	39	1		1	ABCA12	2	215876355	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10704	215876355	27323018	3907	12058											
ATIC	471	broad.mit.edu	37	chr2	216214333	216214333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaggcctgcgacgaactGggaatcatcctcgctcatac	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216214333	T	T	216214333	2	4	9	1	0	0	0	0	0	0	0	1	1109	1335	47	2		2	ATIC	2	216214333	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	337978	216214333	26985040	3908	12059											
FN1	2335	broad.mit.edu	37	chr2	216245443	216245443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctttttcacccttacacGggaatcaatagcccagtgaa	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216245443	T	T	216245443	1	4	9	0	1	0	0	0	0	0	0	0	6020	1131	39	1		1	FN1	2	216245443	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31110	216245443	26953930	3909	12060											
FN1	2335	broad.mit.edu	37	chr2	216257655	216257655	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagttttcaaaattcaccCgtttgttgtgtcagtgtagt	9	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216257655	A	A	216257655	2	1	9	1	0	0	0	0	0	0	0	1	6020	666	23	1		1	FN1	2	216257655	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12212	216257655	26941718	3910	12061											
FN1	2335	broad.mit.edu	37	chr2	216288858	216288858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttctgtggctcccccttGggacactcaccagtgtggtc	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216288858	T	T	216288858	1	4	9	0	1	0	0	0	0	0	0	0	6020	1363	47	2		2	FN1	2	216288858	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31203	216288858	26910515	3911	12062											
PECR	55825	broad.mit.edu	37	chr2	216914013	216914013	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaccaattcgtttagcGgggattttctgaaaagaccc	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216914013	T	T	216914013	2	4	9	1	0	0	0	0	0	0	0	1	11811	1103	39	1		1	PECR	2	216914013	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	625155	216914013	26285360	3912	12063											
PECR	55825	broad.mit.edu	37	chr2	216930060	216930060	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacatgtagaaggtaccCgtcaggttggtctcaagcac	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216930060	A	A	216930060	2	1	9	1	0	0	0	0	0	0	0	1	11811	639	23	1		1	PECR	2	216930060	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16047	216930060	26269313	3913	12064											
XRCC5	7520	broad.mit.edu	37	chr2	216977806	216977806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcctggtatagaatcccCatttgaacaagcaaagaagg	8	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216977806	A	A	216977806	3	1	9	1	0	0	0	0	1	0	0	0	17583	594	21	2	95	2	XRCC5	2	216977806	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47746	216977806	26221567	3914	12065											
XRCC5	7520	broad.mit.edu	37	chr2	217012886	217012886	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaatatgctgaatcctccCgctgaggtgacaacaaaaag	10	9	0	3	rs141533226		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217012886	G	G	217012886	2	3	9	1	0	0	0	0	0	0	0	1	17583	639	23	4		4	XRCC5	2	217012886	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35080	217012886	26186487	3915	12066											
SMARCAL1	50485	broad.mit.edu	37	chr2	217279541	217279541	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcagaggactagctcGggcacctccattgctggcaa	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217279541	T	T	217279541	2	4	9	1	0	0	0	0	0	0	0	1	14887	1103	39	1		1	SMARCAL1	2	217279541	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	266655	217279541	25919832	3916	12067											
SMARCAL1	50485	broad.mit.edu	37	chr2	217279600	217279600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccatcccaaaatttccCaagggagtcttgtaagccag	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217279600	A	A	217279600	3	1	9	1	0	0	0	0	1	0	0	0	14887	594	21	2	175	2	SMARCAL1	2	217279600	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	217279600	25919773	3917	12068											
SMARCAL1	50485	broad.mit.edu	37	chr2	217311880	217311880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctactgtgatgccaaacGggtatgtattatctcttccc	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217311880	T	T	217311880	3	4	9	1	0	0	0	0	1	0	0	0	14887	1130	39	1	1884	1	SMARCAL1	2	217311880	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32280	217311880	25887493	3918	12069											
SMARCAL1	50485	broad.mit.edu	37	chr2	217343004	217343004	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcagaaatgacagaatcCactgattacctctacaaggt	6	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217343004	A	A	217343004	2	1	9	1	0	0	0	0	0	0	0	1	14887	581	21	2		2	SMARCAL1	2	217343004	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31124	217343004	25856369	3919	12070											
AAMP	14	broad.mit.edu	37	chr2	219132283	219132283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttgtcatcttcaccccCggtcactgccaaggtattgg	10	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219132283	A	A	219132283	3	1	9	1	0	0	0	0	1	0	0	0	17	652	23	1	1012	1	AAMP	2	219132283	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1789279	219132283	24067090	3920	12071											
AAMP	14	broad.mit.edu	37	chr2	219134788	219134788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtgtcagcagcagcccCgctttccgattcggactcca	13	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219134788	A	A	219134788	3	1	9	1	0	0	0	0	1	0	0	0	17	652	23	1	1326	1	AAMP	2	219134788	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2505	219134788	24064585	3921	12072											
PNKD	25953	broad.mit.edu	37	chr2	219143207	219143207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcccaatccctgtcaccCctctcactgtgttaagtctc	4	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219143207	A	A	219143207	1	1	9	0	1	0	0	0	0	0	0	0	12241	638	22	2		2	PNKD	2	219143207	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8419	219143207	24056166	3922	12073											
PNKD	25953	broad.mit.edu	37	chr2	219209460	219209460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggatggggcaggggtcGggtcaggcttctctgtcttg	17	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219209460	T	T	219209460	1	4	9	0	1	0	0	0	0	0	0	0	12241	1131	39	1		1	PNKD	2	219209460	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	66253	219209460	23989913	3923	12074											
PNKD	25953	broad.mit.edu	37	chr2	219209568	219209568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggagcgctcctacaaccCgttcctgagaacccactgcc	9	16	0	2	rs147840720		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219209568	A	A	219209568	3	1	9	1	0	0	0	0	1	0	0	0	12241	652	23	1	1425	1	PNKD	2	219209568	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	219209568	23989805	3924	12075											
SLC11A1	6556	broad.mit.edu	37	chr2	219250029	219250029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggagaaccactggcccCaaaccccaaacagccatttt	7	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219250029	A	A	219250029	1	1	9	0	1	0	0	0	0	0	0	0	14493	609	21	2		2	SLC11A1	2	219250029	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	40461	219250029	23949344	3925	12076											
VIL1	7429	broad.mit.edu	37	chr2	219299282	219299282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactaacaacttggagaccGggccctccacacggctgttc	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219299282	T	T	219299282	3	4	9	1	0	0	0	0	1	0	0	0	17291	1116	39	1	1584	1	VIL1	2	219299282	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49253	219299282	23900091	3926	12077											
VIL1	7429	broad.mit.edu	37	chr2	219301236	219301236	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacctggtcatcacccccCggctctttgagtgttccaac	7	15	3	1	rs138942151	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219301236	A	A	219301236	2	1	9	1	0	0	0	0	0	0	0	1	17291	643	23	1		1	VIL1	2	219301236	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1954	219301236	23898137	3927	12078											
VIL1	7429	broad.mit.edu	37	chr2	219301263	219301263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtgttccaacaagactGggcgcttcctggccacagag	12	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219301263	T	T	219301263	3	4	9	1	0	0	0	0	1	0	0	0	17291	1348	47	2	1943	2	VIL1	2	219301263	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	219301263	23898110	3928	12079											
VIL1	7429	broad.mit.edu	37	chr2	219313957	219313957	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctaggaacacctgtcCattgaagatttcactcaggc	7	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219313957	A	A	219313957	2	1	9	1	0	0	0	0	0	0	0	1	17291	581	21	2		2	VIL1	2	219313957	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12694	219313957	23885416	3929	12080											
USP37	57695	broad.mit.edu	37	chr2	219339354	219339354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcttcattaaacctaccCagctctgtgattgttttggg	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219339354	A	A	219339354	2	1	9	1	0	0	0	0	0	0	0	1	17195	608	21	2		2	USP37	2	219339354	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25397	219339354	23860019	3930	12081											
USP37	57695	broad.mit.edu	37	chr2	219346893	219346893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatgatgacttgctgccCaatcttattgttaagcgaga	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219346893	A	A	219346893	3	1	9	1	0	0	0	0	1	0	0	0	17195	594	21	2	1244	2	USP37	2	219346893	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7539	219346893	23852480	3931	12082											
RQCD1	9125	broad.mit.edu	37	chr2	219449361	219449361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctcgcagcacacatccCactttttttgtacccctttt	4	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219449361	A	A	219449361	3	1	9	1	0	0	0	0	1	0	0	0	13781	594	21	2	361	2	RQCD1	2	219449361	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102468	219449361	23750012	3932	12083											
RQCD1	9125	broad.mit.edu	37	chr2	219457378	219457378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccaaagagccttctgccCgtctgctgaagcatgtagtg	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219457378	A	A	219457378	3	1	9	1	0	0	0	0	1	0	0	0	13781	652	23	1	705	1	RQCD1	2	219457378	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8017	219457378	23741995	3933	12084											
PLCD4	84812	broad.mit.edu	37	chr2	219486409	219486409	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaccccagtccacaacactCaattgttaaatctctgctat	4	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219486409	A	A	219486409	1	1	9	0	1	0	0	0	0	0	0	0	12128	841	29	3		3	PLCD4	2	219486409	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29031	219486409	23712964	3934	12085											
PLCD4	84812	broad.mit.edu	37	chr2	219499325	219499325	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgagaagcccatcagccCtttcaaagcccagactctct	6	17	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219499325	A	A	219499325	3	1	9	1	0	0	0	0	1	0	0	0	12128	681	24	2	1914	2	PLCD4	2	219499325	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12916	219499325	23700048	3935	12086											
ZNF142	7701	broad.mit.edu	37	chr2	219515190	219515190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcagctgtctcctgccCaggcaagggtgtacctgctt	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219515190	A	A	219515190	3	1	9	1	0	0	0	0	1	0	0	0	17857	594	21	2	4747	2	ZNF142	2	219515190	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15865	219515190	23684183	3936	12087											
RNF25	64320	broad.mit.edu	37	chr2	219532839	219532839	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagtcctcggggatttcGgatagagatctgtggcacct	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219532839	T	T	219532839	2	4	9	1	0	0	0	0	0	0	0	1	13596	1124	39	1		1	RNF25	2	219532839	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17649	219532839	23666534	3937	12088											
STK36	27148	broad.mit.edu	37	chr2	219540760	219540760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcttctgcagatttgcccGggctatgagcaccaatacaa	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219540760	T	T	219540760	3	4	9	1	0	0	0	0	1	0	0	0	15420	1116	39	1	461	1	STK36	2	219540760	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7921	219540760	23658613	3938	12089											
STK36	27148	broad.mit.edu	37	chr2	219561686	219561686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctttacttgtaagtcaGggacaggaatgaataaaagc	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219561686	T	T	219561686	1	4	9	0	1	0	0	0	0	0	0	0	15420	1015	35	2		2	STK36	2	219561686	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20926	219561686	23637687	3939	12090											
STK36	27148	broad.mit.edu	37	chr2	219561737	219561737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacttctgtctttcccccCgccctctttcacttttatct	3	17	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219561737	A	A	219561737	1	1	9	0	1	0	0	0	0	0	0	0	15420	667	23	1		1	STK36	2	219561737	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	219561737	23637636	3940	12091											
STK36	27148	broad.mit.edu	37	chr2	219561825	219561825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggaccgttttgtggcacCgcttctccatggtcctgagg	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219561825	A	A	219561825	3	1	9	1	0	0	0	0	1	0	0	0	15420	652	23	1	2736	1	STK36	2	219561825	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	219561825	23637548	3941	12092											
STK36	27148	broad.mit.edu	37	chr2	219561890	219561890	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggggagctttcgctatcCagtccaccaagccctgagcc	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219561890	A	A	219561890	2	1	9	1	0	0	0	0	0	0	0	1	15420	581	21	2		2	STK36	2	219561890	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	219561890	23637483	3942	12093											
STK36	27148	broad.mit.edu	37	chr2	219563261	219563261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctctctcccaggttttGggcttctttatagctgcata	7	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219563261	T	T	219563261	1	4	9	0	1	0	0	0	0	0	0	0	15420	1363	47	2		2	STK36	2	219563261	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1371	219563261	23636112	3943	12094											
TTLL4	9654	broad.mit.edu	37	chr2	219614691	219614691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgaccagagactgtttcGgagtgctgctttgaccactc	10	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219614691	T	T	219614691	1	4	9	0	1	0	0	0	0	0	0	0	16855	1131	39	1		1	TTLL4	2	219614691	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51430	219614691	23584682	3944	12095											
TTLL4	9654	broad.mit.edu	37	chr2	219617678	219617678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaatgggaacagaaatacCatggcaacaagcttaaaggt	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219617678	A	A	219617678	3	1	9	1	0	0	0	0	1	0	0	0	16855	594	21	2	3227	2	TTLL4	2	219617678	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2987	219617678	23581695	3945	12096											
TTLL4	9654	broad.mit.edu	37	chr2	219617852	219617853	+	Missense_Mutation	DNP	CG	AT	AT													tcctaggagtagatctgctcCggagttggtgctacaaaggg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	219617853	AT	AT	219617852	3	1	9	1	0	0	0	0	1	0	0	0	16855	643	23	1	3264	1	TTLL4	2	219617852	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	174	219617852	23581521	3946	12097											
TTLL4	9654	broad.mit.edu	37	chr2	219618233	219618233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttagaggtagagctggaGggtaccaagaccccaaacac	11	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219618233	T	T	219618233	1	4	9	0	1	0	0	0	0	0	0	0	16855	1015	35	2		2	TTLL4	2	219618233	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	381	219618233	23581140	3947	12098											
TTLL4	9654	broad.mit.edu	37	chr2	219618317	219618317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcttagtggtctctccCgacatcacttctgactatct	6	13	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219618317	A	A	219618317	3	1	9	1	0	0	0	0	1	0	0	0	16855	652	23	1	3335	1	TTLL4	2	219618317	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	219618317	23581056	3948	12099											
TTLL4	9654	broad.mit.edu	37	chr2	219618900	219618900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctactactctctgaagacGggaccacgcccaaatccaag	8	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219618900	T	T	219618900	3	4	9	1	0	0	0	0	1	0	0	0	16855	1116	39	1	3458	1	TTLL4	2	219618900	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	583	219618900	23580473	3949	12100											
CYP27A1	1593	broad.mit.edu	37	chr2	219674379	219674379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgaacctggccagtgcccCgctcttggagcaagtgatgc	13	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219674379	A	A	219674379	3	1	9	1	0	0	0	0	1	0	0	0	4191	652	23	1	341	1	CYP27A1	2	219674379	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55479	219674379	23524994	3950	12101											
CYP27A1	1593	broad.mit.edu	37	chr2	219677417	219677417	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccaagtggactcgcccCgtgctgcctttctggaagcg	11	16	1	0	rs143600636	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219677417	A	A	219677417	2	1	9	1	0	0	0	0	0	0	0	1	4191	639	23	1		1	CYP27A1	2	219677417	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3038	219677417	23521956	3951	12102											
PRKAG3	53632	broad.mit.edu	37	chr2	219694797	219694797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcatgtagatctgggcgccGggtttccgcagttcgtcatc	13	12	2	1	rs141838287	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219694797	T	T	219694797	2	4	9	1	0	0	0	0	0	0	0	1	12608	1103	39	1		1	PRKAG3	2	219694797	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17380	219694797	23504576	3952	12103											
WNT6	7475	broad.mit.edu	37	chr2	219735915	219735915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagttccagttccgcttcCgccgctggaattgctccagc	10	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219735915	A	A	219735915	3	1	9	1	0	0	0	0	1	0	0	0	17520	652	23	1	253	1	WNT6	2	219735915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41118	219735915	23463458	3953	12104											
C2orf24	27013	broad.mit.edu	37	chr2	220040314	220040314	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcatttccaggctcaccGggacacatgagctacatatt	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220040314	T	T	220040314	2	4	9	1	0	0	0	0	0	0	0	1	2181	1130	39	1		1	C2orf24	2	220040314	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	304399	220040314	23159059	3954	12105											
FAM134A	79137	broad.mit.edu	37	chr2	220045436	220045436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctgtgttggctgtgttGggacactatgttccagggat	15	6	0	0	rs150059479		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220045436	T	T	220045436	3	4	9	1	0	0	0	0	1	0	0	0	5491	1339	47	2	618	2	FAM134A	2	220045436	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5122	220045436	23153937	3955	12106											
FAM134A	79137	broad.mit.edu	37	chr2	220046461	220046461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtggcttctccgtatccCgggccacaactccgcagctg	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220046461	A	A	220046461	2	1	9	1	0	0	0	0	0	0	0	1	5491	643	23	1		1	FAM134A	2	220046461	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1025	220046461	23152912	3956	12107											
ABCB6	10058	broad.mit.edu	37	chr2	220074664	220074664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggccaaacttttgtcacCgttccatggtctgaggctta	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220074664	A	A	220074664	3	1	9	1	0	0	0	0	1	0	0	0	45	652	23	1	7	1	ABCB6	2	220074664	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28203	220074664	23124709	3957	12108											
ANKZF1	55139	broad.mit.edu	37	chr2	220099002	220099002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagaatgaggaatctcCcaaacagggtttgattacta	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220099002	A	A	220099002	3	1	9	1	0	0	0	0	1	0	0	0	693	623	22	2	1226	2	ANKZF1	2	220099002	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24338	220099002	23100371	3958	12109											
GLB1L	79411	broad.mit.edu	37	chr2	220101916	220101916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatccaaaaattggacttGgggctggagaggtacatctt	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220101916	T	T	220101916	3	4	9	1	0	0	0	0	1	0	0	0	6492	1357	47	2	125	2	GLB1L	2	220101916	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2914	220101916	23097457	3959	12110											
GLB1L	79411	broad.mit.edu	37	chr2	220107497	220107497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctaactcaccatctccCactctgcacagatgtaaggt	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220107497	A	A	220107497	3	1	9	1	0	0	0	0	1	0	0	0	6492	595	21	2	1637	2	GLB1L	2	220107497	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5581	220107497	23091876	3960	12111											
STK16	8576	broad.mit.edu	37	chr2	220112892	220112892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccactggtccccttctaGggactaatcaagttatgctc	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220112892	T	T	220112892	1	4	9	0	1	0	0	0	0	0	0	0	15407	1015	35	2		2	STK16	2	220112892	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5395	220112892	23086481	3961	12112											
DNAJB2	3300	broad.mit.edu	37	chr2	220150730	220150730	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttctgagctggatgccGggttccagaatcgctgcaca	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220150730	T	T	220150730	1	4	9	0	1	0	0	0	0	0	0	0	4660	1131	39	1		1	DNAJB2	2	220150730	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	37838	220150730	23048643	3962	12113											
DNPEP	23549	broad.mit.edu	37	chr2	220251723	220251723	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgggaaaagcaccctctCacagcgatggaagctggtga	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220251723	A	A	220251723	1	1	9	0	1	0	0	0	0	0	0	0	4719	841	29	3		3	DNPEP	2	220251723	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	100993	220251723	22947650	3963	12114											
SPEG	10290	broad.mit.edu	37	chr2	220307883	220307883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacccatggtgcgtggacCgtgggcgtccttgctctagc	13	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220307883	A	A	220307883	1	1	9	0	1	0	0	0	0	0	0	0	15154	667	23	1		1	SPEG	2	220307883	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56160	220307883	22891490	3964	12115											
SPEG	10290	broad.mit.edu	37	chr2	220309294	220309294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagatggagcctgctgttGgcagggaggcagaaggcaat	16	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220309294	T	T	220309294	1	4	9	0	1	0	0	0	0	0	0	0	15154	1363	47	2		2	SPEG	2	220309294	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1411	220309294	22890079	3965	12116											
GMPPA	29926	broad.mit.edu	37	chr2	220366687	220366687	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaatgctgatgtctgctcCgacttccccttgagtgctat	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220366687	A	A	220366687	2	1	9	1	0	0	0	0	0	0	0	1	6558	639	23	1		1	GMPPA	2	220366687	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57393	220366687	22832686	3966	12117											
SLC4A3	6508	broad.mit.edu	37	chr2	220501649	220501649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggaggtggacattgccCtggggaggacagcatgggag	19	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220501649	A	A	220501649	1	1	9	0	1	0	0	0	0	0	0	0	14769	696	24	2		2	SLC4A3	2	220501649	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	134962	220501649	22697724	3967	12118											
EPHA4	2043	broad.mit.edu	37	chr2	222299062	222299062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtacatcactgatgtgcCattttagattctgaatgtag	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222299062	A	A	222299062	1	1	9	0	1	0	0	0	0	0	0	0	5211	609	21	2		2	EPHA4	2	222299062	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1797413	222299062	20900311	3968	12119											
EPHA4	2043	broad.mit.edu	37	chr2	222347369	222347369	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccaagttcacagatgtctCgttgacatttgaaatcaagt	7	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222347369	A	A	222347369	4	1	9	1	0	0	0	0	0	1	0	0	5211	893	31	3	1991	3	EPHA4	2	222347369	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48307	222347369	20852004	3969	12120											
EPHA4	2043	broad.mit.edu	37	chr2	222436888	222436888	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcttaccttcattcgcGgggtataccctggaacctgt	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222436888	T	T	222436888	2	4	9	1	0	0	0	0	0	0	0	1	5211	1103	39	1		1	EPHA4	2	222436888	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	89519	222436888	20762485	3970	12121											
PAX3	5077	broad.mit.edu	37	chr2	223066516	223066516	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacaaggaagcccctgctGgaacagtcagctggctttgc	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223066516	T	T	223066516	1	4	9	0	1	0	0	0	0	0	0	0	11574	1363	47	2		2	PAX3	2	223066516	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	629628	223066516	20132857	3971	12122											
PAX3	5077	broad.mit.edu	37	chr2	223085845	223085845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattacaattaacaacatGgtgtcagtactgcagaagga	9	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223085845	T	T	223085845	1	4	9	0	1	0	0	0	0	0	0	0	11574	1363	47	2		2	PAX3	2	223085845	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19329	223085845	20113528	3972	12123											
PAX3	5077	broad.mit.edu	37	chr2	223086025	223086025	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgggagggaacccccCgggaatgagatggttgaaag	18	7	0	2	rs142651003		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223086025	A	A	223086025	3	1	9	1	0	0	0	0	1	0	0	0	11574	652	23	1	691	1	PAX3	2	223086025	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	180	223086025	20113348	3973	12124											
ACSL3	2181	broad.mit.edu	37	chr2	223773626	223773626	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccgttttattttttctccGagtcaagacaagaaaaatca	5	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223773626	T	T	223773626	4	4	9	1	0	0	0	0	0	1	0	0	178	1059	37	3	138	3	ACSL3	2	223773626	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	687601	223773626	19425747	3974	12125											
SCG2	7857	broad.mit.edu	37	chr2	224463246	224463246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctattttctcctctactGggttccagtcttctcccccg	5	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224463246	T	T	224463246	3	4	9	1	0	0	0	0	1	0	0	0	14003	1348	47	2	1102	2	SCG2	2	224463246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	689620	224463246	18736127	3975	12126											
WDFY1	57590	broad.mit.edu	37	chr2	224746698	224746698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaacaagaatcacaaaccCggacttggaactcgaagccc	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224746698	A	A	224746698	3	1	9	1	0	0	0	0	1	0	0	0	17395	652	23	1	219	1	WDFY1	2	224746698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	283452	224746698	18452675	3976	12127											
CUL3	8452	broad.mit.edu	37	chr2	225376214	225376214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcaaggcagtgcatcactCgttctatttcttcattaatt	6	9	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225376214	A	A	225376214	3	1	9	1	0	0	0	0	1	0	0	0	4089	884	31	3	1610	3	CUL3	2	225376214	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	629516	225376214	17823159	3977	12128											
DOCK10	55619	broad.mit.edu	37	chr2	225657701	225657701	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcactcacttcctccactGggagttgttagtaatgagtt	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225657701	T	T	225657701	2	4	9	1	0	0	0	0	0	0	0	1	4725	1335	47	2		2	DOCK10	2	225657701	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	281487	225657701	17541672	3978	12129											
DOCK10	55619	broad.mit.edu	37	chr2	225659716	225659716	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagatccaccagcatctcGgggtccttctcgtgctcctt	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225659716	T	T	225659716	2	4	9	1	0	0	0	0	0	0	0	1	4725	1103	39	1		1	DOCK10	2	225659716	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2015	225659716	17539657	3979	12130											
DOCK10	55619	broad.mit.edu	37	chr2	225659777	225659777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagtccttatacgcttaGtcaggtccttcacctctgct	6	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225659777	T	T	225659777	3	4	9	1	0	0	0	0	1	0	0	0	4725	1029	36	3	1635	3	DOCK10	2	225659777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61	225659777	17539596	3980	12131											
DOCK10	55619	broad.mit.edu	37	chr2	225661689	225661689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcacttacttgtaagtGggaccggacaattgacttct	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225661689	T	T	225661689	3	4	9	1	0	0	0	0	1	0	0	0	4725	1348	47	2	1797	2	DOCK10	2	225661689	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1912	225661689	17537684	3981	12132											
KIAA1486	57624	broad.mit.edu	37	chr2	226446820	226446820	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgggactcctccttgtcCcagatgggcagccccgcggg	14	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226446820	A	A	226446820	2	1	9	1	0	0	0	0	0	0	0	1	8307	610	22	2		2	KIAA1486	2	226446820	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	785131	226446820	16752553	3982	12133											
KIAA1486	57624	broad.mit.edu	37	chr2	226446838	226446838	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagatgggcagccccgcGggagaccccgaggaagagga	16	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226446838	T	T	226446838	2	4	9	1	0	0	0	0	0	0	0	1	8307	1103	39	1		1	KIAA1486	2	226446838	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18	226446838	16752535	3983	12134											
IRS1	3667	broad.mit.edu	37	chr2	227659734	227659734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagttgagctactgacGgtcctctggctgcttctgga	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227659734	T	T	227659734	3	4	9	1	0	0	0	0	1	0	0	0	7910	1116	39	1	11	1	IRS1	2	227659734	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1212896	227659734	15539639	3984	12135											
IRS1	3667	broad.mit.edu	37	chr2	227661351	227661351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggtggccccctacccCgtttgtccacagctttccat	9	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227661351	A	A	227661351	3	1	9	1	0	0	0	0	1	0	0	0	7910	652	23	1	1628	1	IRS1	2	227661351	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1617	227661351	15538022	3985	12136											
IRS1	3667	broad.mit.edu	37	chr2	227661995	227661995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggtggccattgccacccCgagacaaaatgtagtgaccg	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227661995	A	A	227661995	3	1	9	1	0	0	0	0	1	0	0	0	7910	652	23	1	2272	1	IRS1	2	227661995	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	644	227661995	15537378	3986	12137											
IRS1	3667	broad.mit.edu	37	chr2	227662500	227662500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaaggagcctggcttccCgcccaccatgctggccgggg	15	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227662500	A	A	227662500	3	1	9	1	0	0	0	0	1	0	0	0	7910	652	23	1	2777	1	IRS1	2	227662500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	505	227662500	15536873	3987	12138											
IRS1	3667	broad.mit.edu	37	chr2	227663190	227663190	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggcaaagtgctcgtcccGggtgtagagagccaccaggt	15	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227663190	T	T	227663190	2	4	9	1	0	0	0	0	0	0	0	1	7910	1115	39	1		1	IRS1	2	227663190	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	690	227663190	15536183	3988	12139											
IRS1	3667	broad.mit.edu	37	chr2	227663231	227663231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgttcttggagtcagccCgcttgttgatgttgaagcag	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227663231	A	A	227663231	3	1	9	1	0	0	0	0	1	0	0	0	7910	652	23	1	3508	1	IRS1	2	227663231	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	227663231	15536142	3989	12140											
IRS1	3667	broad.mit.edu	37	chr2	227663340	227663340	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaggcgcgccgggccccCagcctcgctggccgcgcgca	15	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227663340	G	G	227663340	3	3	9	1	0	0	0	0	1	0	0	0	7910	594	21	4	3617	4	IRS1	2	227663340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109	227663340	15536033	3990	12141											
RHBDD1	84236	broad.mit.edu	37	chr2	227731966	227731966	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctttgtcaacattttGggctttcctgtaccgaacag	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227731966	T	T	227731966	3	4	9	1	0	0	0	0	1	0	0	0	13425	1339	47	2	504	2	RHBDD1	2	227731966	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68626	227731966	15467407	3991	12142											
RHBDD1	84236	broad.mit.edu	37	chr2	227731998	227731998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgaacagatttgcttgttGggtcgaacttgtggctattc	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227731998	T	T	227731998	3	4	9	1	0	0	0	0	1	0	0	0	13425	1357	47	2	536	2	RHBDD1	2	227731998	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	227731998	15467375	3992	12143											
COL4A4	1286	broad.mit.edu	37	chr2	227871903	227871903	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggaaccagaggactctgGgaataaccacgacaaaacag	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227871903	T	T	227871903	1	4	9	0	1	0	0	0	0	0	0	0	3725	1247	43	2		2	COL4A4	2	227871903	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	139905	227871903	15327470	3993	12144											
COL4A4	1286	broad.mit.edu	37	chr2	227872088	227872088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctgattttctggcgttGggcctggctttcttttaagg	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227872088	T	T	227872088	3	4	9	1	0	0	0	0	1	0	0	0	3725	1357	47	2	50	2	COL4A4	2	227872088	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	185	227872088	15327285	3994	12145											
COL4A4	1286	broad.mit.edu	37	chr2	227887118	227887118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaattccagaatgtcGggctgaccgaatgagtgaat	11	6	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227887118	T	T	227887118	1	4	9	0	1	0	0	0	0	0	0	0	3725	1131	39	1		1	COL4A4	2	227887118	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15030	227887118	15312255	3995	12146											
COL4A4	1286	broad.mit.edu	37	chr2	227919330	227919330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggcccctctcagtcccCggtctccaggaaggccagac	10	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227919330	A	A	227919330	3	1	9	1	0	0	0	0	1	0	0	0	3725	652	23	1	2304	1	COL4A4	2	227919330	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32212	227919330	15280043	3996	12147											
COL4A4	1286	broad.mit.edu	37	chr2	227924141	227924141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagcccctggacatcccGgatcacctctgggtcctttt	8	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227924141	T	T	227924141	3	4	9	1	0	0	0	0	1	0	0	0	3725	1116	39	1	2793	1	COL4A4	2	227924141	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4811	227924141	15275232	3997	12148											
COL4A4	1286	broad.mit.edu	37	chr2	227946904	227946904	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggcaccatgctttccCttggtgaaaaataagagaaa	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227946904	A	A	227946904	5	1	9	1	0	0	0	0	0	0	1	0	3725	695	24	2	3553	2	COL4A4	2	227946904	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	22763	227946904	15252469	3998	12149											
COL4A4	1286	broad.mit.edu	37	chr2	228012055	228012055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatattaagcattcagacGgtttacatccatagaacaaa	6	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228012055	T	T	228012055	1	4	9	0	1	0	0	0	0	0	0	0	3725	1131	39	1		1	COL4A4	2	228012055	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65151	228012055	15187318	3999	12150											
COL4A4	1286	broad.mit.edu	37	chr2	228012125	228012125	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatcacactgaggatacTcaccagggacctgtggccaa	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228012125	A	A	228012125	1	1	9	0	1	0	0	0	0	0	0	0	3725	1566	54	5		5	COL4A4	2	228012125	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	70	228012125	15187248	4000	12151											
COL4A3	1285	broad.mit.edu	37	chr2	228102683	228102683	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctttccctcttcctaGggttgtgtctgtaaagacaa	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228102683	T	T	228102683	5	4	9	1	0	0	0	0	0	0	1	0	3723	1014	35	2	93	2	COL4A3	2	228102683	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	90558	228102683	15096690	4001	12152											
COL4A3	1285	broad.mit.edu	37	chr2	228172521	228172521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaggctttgtcttcaccCgacacagtcaaaccacagca	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228172521	A	A	228172521	2	1	9	1	0	0	0	0	0	0	0	1	3723	644	23	1		1	COL4A3	2	228172521	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	69838	228172521	15026852	4002	12153											
MFF	56947	broad.mit.edu	37	chr2	228212054	228212054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcttatccagtcttctactCgtagggcataccagcagatc	8	13	2	1	rs139205805		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228212054	A	A	228212054	3	1	9	1	0	0	0	0	1	0	0	0	9612	884	31	3	728	3	MFF	2	228212054	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39533	228212054	14987319	4003	12154											
AGFG1	3267	broad.mit.edu	37	chr2	228389661	228389661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcccaacagcttttgctGgggatgcatataaaacacca	7	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228389661	T	T	228389661	1	4	9	0	1	0	0	0	0	0	0	0	380	1363	47	2		2	AGFG1	2	228389661	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	177607	228389661	14809712	4004	12155											
AGFG1	3267	broad.mit.edu	37	chr2	228416853	228416853	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtaagatctaacatttggcGagctgtaagttcattttatg	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228416853	T	T	228416853	1	4	9	0	1	0	0	0	0	0	0	0	380	1073	37	3		3	AGFG1	2	228416853	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27192	228416853	14782520	4005	12156											
SLC19A3	80704	broad.mit.edu	37	chr2	228563482	228563482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaatagcttctacggcccCattatagatggaagaatctt	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228563482	A	A	228563482	3	1	9	1	0	0	0	0	1	0	0	0	14543	594	21	2	557	2	SLC19A3	2	228563482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146629	228563482	14635891	4006	12157											
SLC19A3	80704	broad.mit.edu	37	chr2	228564080	228564080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaggccacctcggcggcGgtgaccatcccatagaagaa	12	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228564080	T	T	228564080	2	4	9	1	0	0	0	0	0	0	0	1	14543	1103	39	1		1	SLC19A3	2	228564080	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	598	228564080	14635293	4007	12158											
CCL20	6364	broad.mit.edu	37	chr2	228681837	228681837	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatggaattggacatagccCaagaacagaaagaaccttgc	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228681837	A	A	228681837	1	1	9	0	1	0	0	0	0	0	0	0	2920	609	21	2		2	CCL20	2	228681837	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	117757	228681837	14517536	4008	12159											
SPHKAP	80309	broad.mit.edu	37	chr2	228860210	228860210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatttccctgggaattcaaGggaagagcaggtacctcatg	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228860210	T	T	228860210	1	4	9	0	1	0	0	0	0	0	0	0	15166	1015	35	2		2	SPHKAP	2	228860210	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	178373	228860210	14339163	4009	12160											
SPHKAP	80309	broad.mit.edu	37	chr2	228883494	228883494	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaatgcctgttgtcattGgggtcgattatcatattttt	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228883494	T	T	228883494	2	4	9	1	0	0	0	0	0	0	0	1	15166	1335	47	2		2	SPHKAP	2	228883494	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23284	228883494	14315879	4010	12161											
SPHKAP	80309	broad.mit.edu	37	chr2	228886506	228886506	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctcgattgaagataaGgaacagttcgtgtcatcctc	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228886506	T	T	228886506	2	4	9	1	0	0	0	0	0	0	0	1	15166	987	35	2		2	SPHKAP	2	228886506	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3012	228886506	14312867	4011	12162											
SPHKAP	80309	broad.mit.edu	37	chr2	228996724	228996724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtgatggagttccccGggccgcttcctgagctgcca	14	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228996724	T	T	228996724	3	4	9	1	0	0	0	0	1	0	0	0	15166	1116	39	1	5036	1	SPHKAP	2	228996724	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110218	228996724	14202649	4012	12163											
SPHKAP	80309	broad.mit.edu	37	chr2	229046274	229046274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgggcatagaaagaagcGggtcttaccttggtaccgag	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229046274	T	T	229046274	1	4	9	0	1	0	0	0	0	0	0	0	15166	1131	39	1		1	SPHKAP	2	229046274	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49550	229046274	14153099	4013	12164											
DNER	92737	broad.mit.edu	37	chr2	230271901	230271901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttaacatctgcaatctcGggcactttgtggtaaatttg	8	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230271901	T	T	230271901	1	4	9	0	1	0	0	0	0	0	0	0	4707	1131	39	1		1	DNER	2	230271901	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1225627	230271901	12927472	4014	12165											
DNER	92737	broad.mit.edu	37	chr2	230272008	230272008	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgctgtcacaggtggctcCgttcagacagctgacgttag	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230272008	A	A	230272008	4	1	9	1	0	0	0	0	0	1	0	0	4707	661	23	1	566	1	DNER	2	230272008	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107	230272008	12927365	4015	12166											
DNER	92737	broad.mit.edu	37	chr2	230450735	230450735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggcagtggcatcttgcCgaatcctggaaacaggaatg	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230450735	A	A	230450735	3	1	9	1	0	0	0	0	1	0	0	0	4707	652	23	1	1567	1	DNER	2	230450735	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	178727	230450735	12748638	4016	12167											
TRIP12	9320	broad.mit.edu	37	chr2	230643607	230643607	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attaccttttggattgctaaGagttacttcttcacctctcc	5	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230643607	T	T	230643607	3	4	9	1	0	0	0	0	1	0	0	0	16681	942	33	3	1041	3	TRIP12	2	230643607	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	192872	230643607	12555766	4017	12168											
TRIP12	9320	broad.mit.edu	37	chr2	230650514	230650514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacatggcccgtgagctgcCgaggtcctgcatcacagact	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230650514	A	A	230650514	3	1	9	1	0	0	0	0	1	0	0	0	16681	652	23	1	1186	1	TRIP12	2	230650514	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6907	230650514	12548859	4018	12169											
TRIP12	9320	broad.mit.edu	37	chr2	230653544	230653544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagctcagtaagccatgttGggatgtttcctgtcatgatt	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230653544	T	T	230653544	3	4	9	1	0	0	0	0	1	0	0	0	16681	1348	47	2	1439	2	TRIP12	2	230653544	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3030	230653544	12545829	4019	12170											
TRIP12	9320	broad.mit.edu	37	chr2	230654476	230654476	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatactgatgggcacactcCatctaaaggacaaaagatca	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230654476	A	A	230654476	4	1	9	1	0	0	0	0	0	1	0	0	16681	603	21	2	1705	2	TRIP12	2	230654476	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	932	230654476	12544897	4020	12171											
TRIP12	9320	broad.mit.edu	37	chr2	230662423	230662423	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctggaggttgagttgttCggttgcagcacaaagtctct	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230662423	A	A	230662423	4	1	9	1	0	0	0	0	0	1	0	0	16681	893	31	3	2672	3	TRIP12	2	230662423	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7947	230662423	12536950	4021	12172											
TRIP12	9320	broad.mit.edu	37	chr2	230679796	230679796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctgcttttgaacaaacGgggtaaaagtaggatcacct	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230679796	T	T	230679796	1	4	9	0	1	0	0	0	0	0	0	0	16681	1131	39	1		1	TRIP12	2	230679796	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17373	230679796	12519577	4022	12173											
FBXO36	130888	broad.mit.edu	37	chr2	230861548	230861548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatttgacttccttgaacGgctctcagacgatttgctcc	7	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230861548	T	T	230861548	3	4	9	1	0	0	0	0	1	0	0	0	5802	1116	39	1	297	1	FBXO36	2	230861548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	181752	230861548	12337825	4023	12174											
SP110	3431	broad.mit.edu	37	chr2	231033837	231033837	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcagtctttacagaacaGggtcaaggaagagtccagaa	11	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231033837	T	T	231033837	1	4	9	0	1	0	0	0	0	0	0	0	15075	1015	35	2		2	SP110	2	231033837	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	172289	231033837	12165536	4024	12175											
SP110	3431	broad.mit.edu	37	chr2	231033860	231033860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggaagagtccagaaacCgccgtcattggcttcatgaa	10	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231033860	A	A	231033860	3	1	9	1	0	0	0	0	1	0	0	0	15075	652	23	1	23	1	SP110	2	231033860	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	231033860	12165513	4025	12176											
SP110	3431	broad.mit.edu	37	chr2	231042167	231042167	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgctgttgaatcctaacGggagctcttcacatttctgc	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231042167	T	T	231042167	1	4	9	0	1	0	0	0	0	0	0	0	15075	1131	39	1		1	SP110	2	231042167	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8307	231042167	12157206	4026	12177											
SP110	3431	broad.mit.edu	37	chr2	231042240	231042240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgtcacctatctgtccCgtcattataataccttcagc	4	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231042240	A	A	231042240	1	1	9	0	1	0	0	0	0	0	0	0	15075	667	23	1		1	SP110	2	231042240	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	73	231042240	12157133	4027	12178											
SP110	3431	broad.mit.edu	37	chr2	231042392	231042392	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgaatgcacttcactgaGgatcctgtaagaaaaagccc	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231042392	T	T	231042392	2	4	9	1	0	0	0	0	0	0	0	1	15075	987	35	2		2	SP110	2	231042392	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152	231042392	12156981	4028	12179											
SP140	11262	broad.mit.edu	37	chr2	231101960	231101960	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaccgctccttcatctcCgagcagatgtatgaagtaag	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231101960	A	A	231101960	2	1	9	1	0	0	0	0	0	0	0	1	15076	639	23	1		1	SP140	2	231101960	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59568	231101960	12097413	4029	12180											
SP140	11262	broad.mit.edu	37	chr2	231112645	231112645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctagttctagaaagcaacGggatgatagatgcggcaagg	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231112645	T	T	231112645	3	4	9	1	0	0	0	0	1	0	0	0	15076	1116	39	1	904	1	SP140	2	231112645	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10685	231112645	12086728	4030	12181											
SP140	11262	broad.mit.edu	37	chr2	231174670	231174670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgagtgtgaggtgtgccGggacggaggggagctgttct	21	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231174670	T	T	231174670	3	4	9	1	0	0	0	0	1	0	0	0	15076	1116	39	1	2297	1	SP140	2	231174670	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62025	231174670	12024703	4031	12182											
SP140L	93349	broad.mit.edu	37	chr2	231222654	231222654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgagggcctccgcgatcGggaactcatcacaaataaaa	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231222654	T	T	231222654	3	4	9	1	0	0	0	0	1	0	0	0	15077	1116	39	1	252	1	SP140L	2	231222654	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47984	231222654	11976719	4032	12183											
SP100	6672	broad.mit.edu	37	chr2	231309027	231309027	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacatgcaggaatacccCgatttaattcacatttataa	5	9	2	0	rs142295037	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231309027	A	A	231309027	2	1	9	1	0	0	0	0	0	0	0	1	15074	639	23	1		1	SP100	2	231309027	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	86373	231309027	11890346	4033	12184											
SP100	6672	broad.mit.edu	37	chr2	231331884	231331884	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtgaggaggaggcgccCgcagaagcctcgagcggggc	18	12	0	2	rs138047298		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231331884	A	A	231331884	2	1	9	1	0	0	0	0	0	0	0	1	15074	639	23	1		1	SP100	2	231331884	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22857	231331884	11867489	4034	12185											
SP100	6672	broad.mit.edu	37	chr2	231368989	231368989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagggcactctatataaGgagcgattcaaacaaggtga	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231368989	T	T	231368989	3	4	9	1	0	0	0	0	1	0	0	0	15074	991	35	2	1936	2	SP100	2	231368989	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37105	231368989	11830384	4035	12186											
SP100	6672	broad.mit.edu	37	chr2	231380145	231380145	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggatgtggaataacacCgctgcagctgacaagcagtt	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231380145	A	A	231380145	2	1	9	1	0	0	0	0	0	0	0	1	15074	639	23	1		1	SP100	2	231380145	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11156	231380145	11819228	4036	12187											
GPR55	9290	broad.mit.edu	37	chr2	231775032	231775032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgctgcacccagtcctGggtgtggtctcggcggccca	13	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231775032	T	T	231775032	3	4	9	1	0	0	0	0	1	0	0	0	6764	1357	47	2	317	2	GPR55	2	231775032	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	394887	231775032	11424341	4037	12188											
GPR55	9290	broad.mit.edu	37	chr2	231775219	231775219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaactgtagatagggatGcttccggtccacaccaggac	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231775219	T	T	231775219	3	4	9	1	0	0	0	0	1	0	0	0	6764	1310	46	3	504	3	GPR55	2	231775219	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	187	231775219	11424154	4038	12189											
PSMD1	5707	broad.mit.edu	37	chr2	231937111	231937111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactaatacgggtactgttcCgggatcagagaaagacaggt	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231937111	A	A	231937111	3	1	9	1	0	0	0	0	1	0	0	0	12798	652	23	1	889	1	PSMD1	2	231937111	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	161892	231937111	11262262	4039	12190											
ARMC9	80210	broad.mit.edu	37	chr2	232156120	232156120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaatgctgaaatgatcCgccagatagaattcatcatc	8	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232156120	A	A	232156120	3	1	9	1	0	0	0	0	1	0	0	0	962	652	23	1	1747	1	ARMC9	2	232156120	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	219009	232156120	11043253	4040	12191											
ARMC9	80210	broad.mit.edu	37	chr2	232196453	232196453	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attctggggagccacgccttGggagcttgtgtcagggtgtc	16	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232196453	C	C	232196453	1	2	9	0	1	0	0	0	0	0	0	0	962	1363	47	4		4	ARMC9	2	232196453	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	40333	232196453	11002920	4041	12192											
NCL	4691	broad.mit.edu	37	chr2	232319975	232319975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctcctcggaagcctcctCgccctacaggaggaaggcaa	11	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232319975	A	A	232319975	3	1	9	1	0	0	0	0	1	0	0	0	10321	884	31	3	76	3	NCL	2	232319975	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123522	232319975	10879398	4042	12193											
NCL	4691	broad.mit.edu	37	chr2	232320345	232320345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaccaaacctagaacacCaaatgaaattgcccattata	3	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232320345	A	A	232320345	1	1	9	0	1	0	0	0	0	0	0	0	10321	609	21	2		2	NCL	2	232320345	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	370	232320345	10879028	4043	12194											
NCL	4691	broad.mit.edu	37	chr2	232320640	232320640	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagacagaaaggagctcaatGagaagacacattagactcaa	9	7	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232320640	T	T	232320640	1	4	9	0	1	0	0	0	0	0	0	0	10321	1305	45	3		3	NCL	2	232320640	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	295	232320640	10878733	4044	12195											
NCL	4691	broad.mit.edu	37	chr2	232322421	232322421	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctccagtatagtacagGgaaatagatcgcccatcgat	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232322421	T	T	232322421	2	4	9	1	0	0	0	0	0	0	0	1	10321	1219	43	2		2	NCL	2	232322421	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1781	232322421	10876952	4045	12196											
PDE6D	5147	broad.mit.edu	37	chr2	232602846	232602846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggattttcttgggaacacGggctggtaagagaaaaacaa	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232602846	T	T	232602846	3	4	9	1	0	0	0	0	1	0	0	0	11742	1116	39	1	322	1	PDE6D	2	232602846	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	280425	232602846	10596527	4046	12197											
DIS3L2	129563	broad.mit.edu	37	chr2	232889039	232889039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagccttcattccttcccCggtaagttcaataaatttat	5	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232889039	A	A	232889039	3	1	9	1	0	0	0	0	1	0	0	0	4577	666	23	1	273	1	DIS3L2	2	232889039	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	286193	232889039	10310334	4047	12198											
DIS3L2	129563	broad.mit.edu	37	chr2	232894716	232894716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgagacatttttattgatGgggttgttgctcgtaataga	11	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232894716	T	T	232894716	3	4	9	1	0	0	0	0	1	0	0	0	4577	1348	47	2	306	2	DIS3L2	2	232894716	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5677	232894716	10304657	4048	12199											
DIS3L2	129563	broad.mit.edu	37	chr2	232894775	232894775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcgtgaaactgcttccCgaggagcattggaaggtgag	16	7	0	2	rs141249322	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232894775	A	A	232894775	2	1	9	1	0	0	0	0	0	0	0	1	4577	639	23	1		1	DIS3L2	2	232894775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	232894775	10304598	4049	12200											
DIS3L2	129563	broad.mit.edu	37	chr2	233075073	233075073	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgacccatcaaccgccCgagacctcgatgatgccctc	7	18	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233075073	A	A	233075073	2	1	9	1	0	0	0	0	0	0	0	1	4577	644	23	1		1	DIS3L2	2	233075073	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	180298	233075073	10124300	4050	12201											
DIS3L2	129563	broad.mit.edu	37	chr2	233194676	233194676	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgaccagatggggctgccCgtggacttcagctccgcagg	15	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233194676	A	A	233194676	2	1	9	1	0	0	0	0	0	0	0	1	4577	639	23	1		1	DIS3L2	2	233194676	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	119603	233194676	10004697	4051	12202											
ALPP	250	broad.mit.edu	37	chr2	233243697	233243697	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttgaggaggagaacccGgacttctggaaccgcgaggc	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233243697	T	T	233243697	2	4	9	1	0	0	0	0	0	0	0	1	548	1103	39	1		1	ALPP	2	233243697	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	49021	233243697	9955676	4052	12203											
CHRND	1144	broad.mit.edu	37	chr2	233392958	233392959	+	Intron	INS	-	T	T													gagtgcactggtgacatgccINStttgggattccagggctgga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233392959	T	T	233392958	6	5	9	0	1	1	1	0	0	0	0	0	3425	696	24	0		0	CHRND	2	233392958	Intron	INS	-	TCGA-05-4396-01A-21D-1855-08	149261	233392958	9806415	4053	12204											
CHRND	1144	broad.mit.edu	37	chr2	233396325	233396325	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgctcaacatccacttcCgaacacccagcacccatgtg	6	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233396325	A	A	233396325	2	1	9	1	0	0	0	0	0	0	0	1	3425	644	23	1		1	CHRND	2	233396325	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3367	233396325	9803048	4054	12205											
EIF4E2	9470	broad.mit.edu	37	chr2	233422655	233422655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacactttttggtactccaGgagaacccccggccgtccca	8	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233422655	T	T	233422655	3	4	9	1	0	0	0	0	1	0	0	0	5072	1000	35	2	207	2	EIF4E2	2	233422655	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26330	233422655	9776718	4055	12206											
KCNJ13	3769	broad.mit.edu	37	chr2	233633071	233633071	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattcacctttggaacctcGggtcaacagagatgcaaaac	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233633071	T	T	233633071	2	4	9	1	0	0	0	0	0	0	0	1	8117	1124	39	1		1	KCNJ13	2	233633071	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	210416	233633071	9566302	4056	12207											
KCNJ13	3769	broad.mit.edu	37	chr2	233633441	233633441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagattaggtttgccatcCatgtgagctactactgctgt	9	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233633441	A	A	233633441	3	1	9	1	0	0	0	0	1	0	0	0	8117	594	21	2	543	2	KCNJ13	2	233633441	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	370	233633441	9565932	4057	12208											
GIGYF2	26058	broad.mit.edu	37	chr2	233659543	233659543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacttccacctcctgttccCaatcctagtcctactctccg	3	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233659543	A	A	233659543	2	1	9	1	0	0	0	0	0	0	0	1	6442	581	21	2		2	GIGYF2	2	233659543	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26102	233659543	9539830	4058	12209											
GIGYF2	26058	broad.mit.edu	37	chr2	233671241	233671241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcagaatggtttcaggcGggctattttactatgtcttt	11	6	2	1	rs142567233		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233671241	T	T	233671241	2	4	9	1	0	0	0	0	0	0	0	1	6442	1103	39	1		1	GIGYF2	2	233671241	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11698	233671241	9528132	4059	12210											
GIGYF2	26058	broad.mit.edu	37	chr2	233681731	233681731	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggaagaagaacttgccCgaaggaaacaggtatgtatc	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233681731	A	A	233681731	2	1	9	1	0	0	0	0	0	0	0	1	6442	644	23	1		1	GIGYF2	2	233681731	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10490	233681731	9517642	4060	12211											
GIGYF2	26058	broad.mit.edu	37	chr2	233681760	233681760	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggtatgtatctgggaactCtgaccataggattagtgctt	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233681760	A	A	233681760	1	1	9	0	1	0	0	0	0	0	0	0	6442	928	32	3		3	GIGYF2	2	233681760	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	233681760	9517613	4061	12212											
GIGYF2	26058	broad.mit.edu	37	chr2	233721467	233721467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagccgcttggttgcctGggtgtggtcactcatagcca	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233721467	T	T	233721467	1	4	9	0	1	0	0	0	0	0	0	0	6442	1363	47	2		2	GIGYF2	2	233721467	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39707	233721467	9477906	4062	12213											
INPP5D	3635	broad.mit.edu	37	chr2	234072442	234072442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgcggactacatccccCatgacatttacgtgatcggc	8	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234072442	A	A	234072442	3	1	9	1	0	0	0	0	1	0	0	0	7826	594	21	2	884	2	INPP5D	2	234072442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	350975	234072442	9126931	4063	12214											
INPP5D	3635	broad.mit.edu	37	chr2	234104058	234104058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccagactttgtgaagacGgagcgtgatgaatccagtgg	13	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234104058	T	T	234104058	2	4	9	1	0	0	0	0	0	0	0	1	7826	1103	39	1		1	INPP5D	2	234104058	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31616	234104058	9095315	4064	12215											
SAG	6295	broad.mit.edu	37	chr2	234243554	234243554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcaaataggggctcatGgggtccatggcagctttgat	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234243554	T	T	234243554	1	4	9	0	1	0	0	0	0	0	0	0	13919	1363	47	2		2	SAG	2	234243554	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	139496	234243554	8955819	4065	12216											
SAG	6295	broad.mit.edu	37	chr2	234243659	234243659	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacgctgacgctgctgccCttgctggctaacaatcgaga	11	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234243659	A	A	234243659	2	1	9	1	0	0	0	0	0	0	0	1	13919	668	24	2		2	SAG	2	234243659	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	234243659	8955714	4066	12217											
DGKD	8527	broad.mit.edu	37	chr2	234375866	234375866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggtacctgcctctctccCgcgtgtgtttctggccgtcc	11	17	2	0	rs74921306	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234375866	A	A	234375866	1	1	9	0	1	0	0	0	0	0	0	0	4507	667	23	1		1	DGKD	2	234375866	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	132207	234375866	8823507	4067	12218											
USP40	55230	broad.mit.edu	37	chr2	234434195	234434195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaaccatgtctccttccCaaaattctaacagctgaaga	5	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234434195	A	A	234434195	3	1	9	1	0	0	0	0	1	0	0	0	17199	595	21	2	2047	2	USP40	2	234434195	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58329	234434195	8765178	4068	12219											
UGT1A8	54576	broad.mit.edu	37	chr2	234527145	234527145	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttggactatcccaaaccCgtgatgcccaatatgatctt	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234527145	A	A	234527145	2	1	9	1	0	0	0	0	0	0	0	1	17077	639	23	1		1	UGT1A8	2	234527145	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92950	234527145	8672228	4069	12220											
UGT1A10	54575	broad.mit.edu	37	chr2	234545430	234545430	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactctggaagatcagaacCgggaattcatggttttcgcc	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234545430	A	A	234545430	2	1	9	1	0	0	0	0	0	0	0	1	17071	643	23	1		1	UGT1A10	2	234545430	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18285	234545430	8653943	4070	12221											
UGT1A10	54575	broad.mit.edu	37	chr2	234545933	234545933	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatttggttgttgcgaacGgactttgttttggactatcc	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234545933	T	T	234545933	2	4	9	1	0	0	0	0	0	0	0	1	17071	1103	39	1		1	UGT1A10	2	234545933	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	503	234545933	8653440	4071	12222											
UGT1A10	54575	broad.mit.edu	37	chr2	234545945	234545945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgaacggactttgttttGgactatcccaaacccgtgat	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234545945	T	T	234545945	3	4	9	1	0	0	0	0	1	0	0	0	17071	1339	47	2	779	2	UGT1A10	2	234545945	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	234545945	8653428	4072	12223											
UGT1A10	54575	broad.mit.edu	37	chr2	234545969	234545969	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcccaaacccgtgatgccCaacatgatcttcattggtgg	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234545969	A	A	234545969	2	1	9	1	0	0	0	0	0	0	0	1	17071	581	21	2		2	UGT1A10	2	234545969	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	234545969	8653404	4073	12224											
UGT1A9	54600	broad.mit.edu	37	chr2	234581152	234581152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctctttcctatgtccCcagaattctcttagggttct	6	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234581152	A	A	234581152	3	1	9	1	0	0	0	0	1	0	0	0	17078	623	22	2	574	2	UGT1A9	2	234581152	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35183	234581152	8618221	4074	12225											
UGT1A9	54600	broad.mit.edu	37	chr2	234581244	234581244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaacatttattatgccacCgttttttcaaaaatgcccta	5	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234581244	A	A	234581244	3	1	9	1	0	0	0	0	1	0	0	0	17078	652	23	1	666	1	UGT1A9	2	234581244	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	234581244	8618129	4075	12226											
UGT1A9	54600	broad.mit.edu	37	chr2	234581345	234581345	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatttggttgttgcgaacGgactttgttttggactatcc	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234581345	T	T	234581345	2	4	9	1	0	0	0	0	0	0	0	1	17078	1103	39	1		1	UGT1A9	2	234581345	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101	234581345	8618028	4076	12227											
UGT1A7	54577	broad.mit.edu	37	chr2	234591303	234591303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctccaaacccctgtcacGgcatatgatctctacagcca	5	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234591303	T	T	234591303	2	4	9	1	0	0	0	0	0	0	0	1	17076	1103	39	1		1	UGT1A7	2	234591303	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9958	234591303	8608070	4077	12228											
UGT1A6	54578	broad.mit.edu	37	chr2	234602182	234602182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggggttttccgtgttccCtggagcatacattcagcaga	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234602182	A	A	234602182	3	1	9	1	0	0	0	0	1	0	0	0	17075	680	24	2	534	2	UGT1A6	2	234602182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10879	234602182	8597191	4078	12229											
UGT1A5	54579	broad.mit.edu	37	chr2	234622346	234622346	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttatgcaagccttgcctctGagctttttcagagagaggtg	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234622346	T	T	234622346	4	4	9	1	0	0	0	0	0	1	0	0	17074	1291	45	3	711	3	UGT1A5	2	234622346	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20164	234622346	8577027	4079	12230											
UGT1A5	54579	broad.mit.edu	37	chr2	234622409	234622409	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcatctgtgtggctgttcCgaggggactttgtgatggat	15	6	1	1	rs145951104		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234622409	A	A	234622409	2	1	9	1	0	0	0	0	0	0	0	1	17074	644	23	1		1	UGT1A5	2	234622409	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63	234622409	8576964	4080	12231											
UGT1A4	54657	broad.mit.edu	37	chr2	234628015	234628015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtgacttagactttaaGggcacacagtgtccaaatcc	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234628015	T	T	234628015	3	4	9	1	0	0	0	0	1	0	0	0	17073	991	35	2	551	2	UGT1A4	2	234628015	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5606	234628015	8571358	4081	12232											
UGT1A4	54657	broad.mit.edu	37	chr2	234628225	234628225	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcttgtcagctatgcatcCgtgtggctgttccgagggga	14	9	2	0	rs112157197		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234628225	A	A	234628225	2	1	9	1	0	0	0	0	0	0	0	1	17073	639	23	1		1	UGT1A4	2	234628225	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	210	234628225	8571148	4082	12233											
UGT1A3	54659	broad.mit.edu	37	chr2	234638321	234638321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtgatttagactttaaGggcacacagtgtccaaaccc	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234638321	T	T	234638321	3	4	9	1	0	0	0	0	1	0	0	0	17072	991	35	2	551	2	UGT1A3	2	234638321	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10096	234638321	8561052	4083	12234											
UGT1A1	54658	broad.mit.edu	37	chr2	234669559	234669559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacatgaccttcctgcagcGggtgaagaacatgctcattg	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234669559	T	T	234669559	3	4	9	1	0	0	0	0	1	0	0	0	17070	1116	39	1	628	1	UGT1A1	2	234669559	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31238	234669559	8529814	4084	12235											
UGT1A1	54658	broad.mit.edu	37	chr2	234669619	234669619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgacgtggtttattcccCgtatgcaacccttgcctcag	10	13	1	0	rs35350960	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234669619	A	A	234669619	3	1	9	1	0	0	0	0	1	0	0	0	17070	652	23	1	688	1	UGT1A1	2	234669619	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	234669619	8529754	4085	12236											
HJURP	55355	broad.mit.edu	37	chr2	234749296	234749296	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagctgccctggtctccCggtctgacggtgttgtccac	13	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234749296	A	A	234749296	2	1	9	1	0	0	0	0	0	0	0	1	7256	639	23	1		1	HJURP	2	234749296	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79677	234749296	8450077	4086	12237											
HJURP	55355	broad.mit.edu	37	chr2	234749979	234749979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggtaaactcagcctgcGggtttctaagccctgaaggc	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234749979	T	T	234749979	3	4	9	1	0	0	0	0	1	0	0	0	7256	1116	39	1	807	1	HJURP	2	234749979	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	683	234749979	8449394	4087	12238											
HJURP	55355	broad.mit.edu	37	chr2	234750050	234750050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcatggcccaggagtccGggaggcacatccggcgaggc	16	12	1	0	rs148843421	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234750050	T	T	234750050	3	4	9	1	0	0	0	0	1	0	0	0	7256	1116	39	1	878	1	HJURP	2	234750050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71	234750050	8449323	4088	12239											
HJURP	55355	broad.mit.edu	37	chr2	234750283	234750283	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaggaagaatacttcgaGggtgtcactttgcgctcctt	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234750283	T	T	234750283	2	4	9	1	0	0	0	0	0	0	0	1	7256	987	35	2		2	HJURP	2	234750283	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	233	234750283	8449090	4089	12240											
HJURP	55355	broad.mit.edu	37	chr2	234750475	234750475	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttctccttggagctcctCtgagaacgtctggctccttt	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234750475	G	G	234750475	3	3	9	1	0	0	0	0	1	0	0	0	7256	912	32	4	1303	4	HJURP	2	234750475	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	192	234750475	8448898	4090	12241											
TRPM8	79054	broad.mit.edu	37	chr2	234854499	234854499	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtttccctgtacttttcaGggctattttttagcccagta	7	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234854499	T	T	234854499	5	4	9	1	0	0	0	0	0	0	1	0	16717	1014	35	2	721	2	TRPM8	2	234854499	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	104024	234854499	8344874	4091	12242											
TRPM8	79054	broad.mit.edu	37	chr2	234878889	234878889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcacaagaagctgctttGgtactatgtggcgttcttca	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234878889	T	T	234878889	3	4	9	1	0	0	0	0	1	0	0	0	16717	1357	47	2	2236	2	TRPM8	2	234878889	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24390	234878889	8320484	4092	12243											
TRPM8	79054	broad.mit.edu	37	chr2	234879016	234879016	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcggtgccacaccccccCgagctggtcctgtactcgct	9	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234879016	A	A	234879016	2	1	9	1	0	0	0	0	0	0	0	1	16717	639	23	1		1	TRPM8	2	234879016	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	127	234879016	8320357	4093	12244											
SH3BP4	23677	broad.mit.edu	37	chr2	235950157	235950157	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgctcctacagtctctcGgaactctccgtcctccaagc	7	17	2	0	rs143331239		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235950157	T	T	235950157	2	4	9	1	0	0	0	0	0	0	0	1	14359	1103	39	1		1	SH3BP4	2	235950157	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1071141	235950157	7249216	4094	12245											
AGAP1	116987	broad.mit.edu	37	chr2	236715989	236715989	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaacaggtgagcagcctccCcatccttccctccctgtcgc	7	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236715989	G	G	236715989	1	3	9	0	1	0	0	0	0	0	0	0	366	638	22	4		4	AGAP1	2	236715989	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	765832	236715989	6483384	4095	12246											
AGAP1	116987	broad.mit.edu	37	chr2	236945286	236945286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacgacgtatgaggagcGggacgcctgggtccaagcca	15	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236945286	T	T	236945286	3	4	9	1	0	0	0	0	1	0	0	0	366	1116	39	1	1781	1	AGAP1	2	236945286	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	229297	236945286	6254087	4096	12247											
GBX2	2637	broad.mit.edu	37	chr2	237074649	237074649	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgacgatcttagggttccGggagggctcccctgtcttgg	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237074649	T	T	237074649	2	4	9	1	0	0	0	0	0	0	0	1	6343	1115	39	1		1	GBX2	2	237074649	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	129363	237074649	6124724	4097	12248											
GBX2	2637	broad.mit.edu	37	chr2	237075029	237075029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctcctccttgcccttcGggtcgtcttccacctttgac	7	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237075029	T	T	237075029	3	4	9	1	0	0	0	0	1	0	0	0	6343	1116	39	1	475	1	GBX2	2	237075029	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	380	237075029	6124344	4098	12249											
GBX2	2637	broad.mit.edu	37	chr2	237075078	237075078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgccctcggacagcccCgactgaaagcaaaaccaaac	7	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237075078	A	A	237075078	3	1	9	1	0	0	0	0	1	0	0	0	6343	652	23	1	524	1	GBX2	2	237075078	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	237075078	6124295	4099	12250											
GBX2	2637	broad.mit.edu	37	chr2	237075143	237075143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccttcctttctccttccCaccgtcatttggacattccg	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237075143	A	A	237075143	1	1	9	0	1	0	0	0	0	0	0	0	6343	609	21	2		2	GBX2	2	237075143	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	237075143	6124230	4100	12251											
IQCA1	79781	broad.mit.edu	37	chr2	237300647	237300647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttcctgctttcactGggcgctccctttctctgtcc	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237300647	T	T	237300647	3	4	9	1	0	0	0	0	1	0	0	0	7872	1348	47	2	1119	2	IQCA1	2	237300647	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	225504	237300647	5898726	4101	12252											
CXCR7	57007	broad.mit.edu	37	chr2	237489663	237489663	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacctactacctgaagacCgtcacgtctgcgtccaacaa	7	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237489663	A	A	237489663	2	1	9	1	0	0	0	0	0	0	0	1	4129	639	23	1		1	CXCR7	2	237489663	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	189016	237489663	5709710	4102	12253											
COL6A3	1293	broad.mit.edu	37	chr2	238233426	238233426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacccacgcttaggttccCatcacactgatgactccggg	9	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238233426	A	A	238233426	3	1	9	1	0	0	0	0	1	0	0	0	3733	594	21	2	12	2	COL6A3	2	238233426	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	743763	238233426	4965947	4103	12254											
COL6A3	1293	broad.mit.edu	37	chr2	238249672	238249672	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaactggaacagggtggtGgtctcagcgctgtctaagat	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238249672	T	T	238249672	2	4	9	1	0	0	0	0	0	0	0	1	3733	1335	47	2		2	COL6A3	2	238249672	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16246	238249672	4949701	4104	12255											
COL6A3	1293	broad.mit.edu	37	chr2	238266526	238266526	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttgtcctgggttaccCtgaaagcaacatgggaaagg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238266526	A	A	238266526	5	1	9	1	0	0	0	0	0	0	1	0	3733	695	24	2	3154	2	COL6A3	2	238266526	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	16854	238266526	4932847	4105	12256											
COL6A3	1293	broad.mit.edu	37	chr2	238268023	238268023	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttctctcctgggaatccCcgagagccctagaaggcaag	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238268023	A	A	238268023	2	1	9	1	0	0	0	0	0	0	0	1	3733	610	22	2		2	COL6A3	2	238268023	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1497	238268023	4931350	4106	12257											
COL6A3	1293	broad.mit.edu	37	chr2	238270462	238270462	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaccccacagcaagctttctCggcaatgttgtcctaccgaa	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238270462	A	A	238270462	4	1	9	1	0	0	0	0	0	1	0	0	3733	893	31	3	3577	3	COL6A3	2	238270462	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2439	238270462	4928911	4107	12258											
COL6A3	1293	broad.mit.edu	37	chr2	238274446	238274446	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcatgttccggaacttctcGagcatctctggctggtactc	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238274446	T	T	238274446	2	4	9	1	0	0	0	0	0	0	0	1	3733	1045	37	3		3	COL6A3	2	238274446	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3984	238274446	4924927	4108	12259											
LRRFIP1	9208	broad.mit.edu	37	chr2	238626430	238626430	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgggctggatacaaaatGgggtgacatcgagcagtgga	15	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238626430	T	T	238626430	1	4	9	0	1	0	0	0	0	0	0	0	9114	1357	47	2		2	LRRFIP1	2	238626430	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	351984	238626430	4572943	4109	12260											
LRRFIP1	9208	broad.mit.edu	37	chr2	238628219	238628219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacacatcggttagtacCgtgttcattcattacttggg	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238628219	A	A	238628219	1	1	9	0	1	0	0	0	0	0	0	0	9114	667	23	1		1	LRRFIP1	2	238628219	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1789	238628219	4571154	4110	12261											
LRRFIP1	9208	broad.mit.edu	37	chr2	238642489	238642489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcccaccctgctgcccCgcaccccctcccactgtgca	7	23	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238642489	A	A	238642489	1	1	9	0	1	0	0	0	0	0	0	0	9114	667	23	1		1	LRRFIP1	2	238642489	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14270	238642489	4556884	4111	12262											
LRRFIP1	9208	broad.mit.edu	37	chr2	238662050	238662050	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgtaccaggttgatacCctaaaagatatgttgctgga	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238662050	A	A	238662050	2	1	9	1	0	0	0	0	0	0	0	1	9114	610	22	2		2	LRRFIP1	2	238662050	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19561	238662050	4537323	4112	12263											
LRRFIP1	9208	broad.mit.edu	37	chr2	238664766	238664766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaaaaacacgcccacaGtatactgcaatttcagtttg	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238664766	T	T	238664766	3	4	9	1	0	0	0	0	1	0	0	0	9114	1029	36	3	1199	3	LRRFIP1	2	238664766	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2716	238664766	4534607	4113	12264											
LRRFIP1	9208	broad.mit.edu	37	chr2	238671988	238671988	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagacactcaaaatgaaccCttagatatgaaagagcccga	8	9	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238671988	A	A	238671988	2	1	9	1	0	0	0	0	0	0	0	1	9114	668	24	2		2	LRRFIP1	2	238671988	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7222	238671988	4527385	4114	12265											
RBM44	375316	broad.mit.edu	37	chr2	238738135	238738135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagacagtgaggttttccCttccgaccaggttagtgttt	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238738135	A	A	238738135	3	1	9	1	0	0	0	0	1	0	0	0	13246	681	24	2	2925	2	RBM44	2	238738135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66147	238738135	4461238	4115	12266											
RBM44	375316	broad.mit.edu	37	chr2	238738167	238738167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtgtttttgatagatccCttaaatggtctttgtacgtc	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238738167	A	A	238738167	1	1	9	0	1	0	0	0	0	0	0	0	13246	696	24	2		2	RBM44	2	238738167	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	238738167	4461206	4116	12267											
SCLY	51540	broad.mit.edu	37	chr2	238990365	238990365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcggtcacctttgtccCggtgtccaaggtgagcgggc	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238990365	A	A	238990365	3	1	9	1	0	0	0	0	1	0	0	0	14020	652	23	1	518	1	SCLY	2	238990365	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	252198	238990365	4209008	4117	12268											
ILKAP	80895	broad.mit.edu	37	chr2	239090739	239090739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccttctgtatcctcatcCgctcttcatactgagttgga	7	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239090739	A	A	239090739	3	1	9	1	0	0	0	0	1	0	0	0	7784	652	23	1	391	1	ILKAP	2	239090739	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100374	239090739	4108634	4118	12269											
PER2	8864	broad.mit.edu	37	chr2	239157733	239157733	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctgcgggcaggccgccCgtctgcatccactggtggac	15	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239157733	A	A	239157733	2	1	9	1	0	0	0	0	0	0	0	1	11824	639	23	1		1	PER2	2	239157733	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66994	239157733	4041640	4119	12270											
PER2	8864	broad.mit.edu	37	chr2	239164349	239164349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaagtagtaatggcagtGggactggaaaatgctgagtt	14	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239164349	T	T	239164349	3	4	9	1	0	0	0	0	1	0	0	0	11824	1348	47	2	1522	2	PER2	2	239164349	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6616	239164349	4035024	4120	12271											
PER2	8864	broad.mit.edu	37	chr2	239185825	239185825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgccatcatcaggctaaaGgtatctggactatgaaaaca	8	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239185825	T	T	239185825	2	4	9	1	0	0	0	0	0	0	0	1	11824	987	35	2		2	PER2	2	239185825	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21476	239185825	4013548	4121	12272											
HDAC4	9759	broad.mit.edu	37	chr2	240003899	240003899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaagcctgctgggtccCgtttccatggtgcacgtcct	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240003899	A	A	240003899	3	1	9	1	0	0	0	0	1	0	0	0	7076	652	23	1	746	1	HDAC4	2	240003899	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	818074	240003899	3195474	4122	12273											
HDAC4	9759	broad.mit.edu	37	chr2	240061436	240061436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctccgcgctgacgctccCggagctgttgttgggtgagc	15	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240061436	A	A	240061436	3	1	9	1	0	0	0	0	1	0	0	0	7076	652	23	1	2408	1	HDAC4	2	240061436	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57537	240061436	3137937	4123	12274											
NDUFA10	4705	broad.mit.edu	37	chr2	240929546	240929546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctccaatggtgacttccGggagaaagataggaatgctt	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240929546	T	T	240929546	3	4	9	1	0	0	0	0	1	0	0	0	10355	1116	39	1	131	1	NDUFA10	2	240929546	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	868110	240929546	2269827	4124	12275											
MYEOV2	150678	broad.mit.edu	37	chr2	241073407	241073407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagtccatcaagagccCggtgctgcctcccgcctggg	12	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241073407	A	A	241073407	3	1	9	1	0	0	0	0	1	0	0	0	10120	652	23	1	606	1	MYEOV2	2	241073407	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143861	241073407	2125966	4125	12276											
MYEOV2	150678	broad.mit.edu	37	chr2	241073463	241073463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatgtcaggtgcgttttcCgaaagaacaggtgataagtg	13	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241073463	A	A	241073463	1	1	9	0	1	0	0	0	0	0	0	0	10120	667	23	1		1	MYEOV2	2	241073463	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	241073463	2125910	4126	12277											
ANKMY1	51281	broad.mit.edu	37	chr2	241420471	241420471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcaagaggcggacccCgatggagcggccacactggt	17	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241420471	A	A	241420471	3	1	9	1	0	0	0	0	1	0	0	0	634	652	23	1	171	1	ANKMY1	2	241420471	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	347008	241420471	1778902	4127	12278											
ANKMY1	51281	broad.mit.edu	37	chr2	241421687	241421687	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatcagctccgctgcatgaGagagggtcccgcattagtac	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241421687	T	T	241421687	1	4	9	0	1	0	0	0	0	0	0	0	634	957	33	3		3	ANKMY1	2	241421687	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1216	241421687	1777686	4128	12279											
RNPEPL1	57140	broad.mit.edu	37	chr2	241514397	241514397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcccctccctattccacGggacactggtggtttcggac	10	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241514397	T	T	241514397	1	4	9	0	1	0	0	0	0	0	0	0	13621	1131	39	1		1	RNPEPL1	2	241514397	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	92710	241514397	1684976	4129	12280											
CAPN10	11132	broad.mit.edu	37	chr2	241533328	241533328	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattcctcatgcaggtgccCgggagctgggggagttccat	14	12	1	0	rs148716964		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241533328	A	A	241533328	2	1	9	1	0	0	0	0	0	0	0	1	2649	643	23	1		1	CAPN10	2	241533328	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18931	241533328	1666045	4130	12281											
CAPN10	11132	broad.mit.edu	37	chr2	241533925	241533925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgacactaccagttctcGggaggggcttctgctgagat	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241533925	T	T	241533925	1	4	9	0	1	0	0	0	0	0	0	0	2649	1131	39	1		1	CAPN10	2	241533925	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	597	241533925	1665448	4131	12282											
CAPN10	11132	broad.mit.edu	37	chr2	241555909	241555909	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgactgcgagtcagctcCgatacttcaccagattcagg	10	12	3	1	rs17846960	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241555909	A	A	241555909	2	1	9	1	0	0	0	0	0	0	0	1	2649	639	23	1		1	CAPN10	2	241555909	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21984	241555909	1643464	4132	12283											
KIF1A	547	broad.mit.edu	37	chr2	241724447	241724447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcgtcatggcgcttctGggtgaagatgatgttgaaga	14	7	3	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241724447	T	T	241724447	3	4	9	1	0	0	0	0	1	0	0	0	8353	1357	47	2	4557	2	KIF1A	2	241724447	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	168538	241724447	1474926	4133	12284											
SNED1	25992	broad.mit.edu	37	chr2	241991796	241991796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccctgcttccggagccCgtgtgtgaatgggggcacct	13	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241991796	A	A	241991796	3	1	9	1	0	0	0	0	1	0	0	0	14959	652	23	1	2052	1	SNED1	2	241991796	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	267349	241991796	1207577	4134	12285											
PASK	23178	broad.mit.edu	37	chr2	242046028	242046028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgcaaacagccttggcCattaggagcctcgcctggaa	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242046028	A	A	242046028	3	1	9	1	0	0	0	0	1	0	0	0	11566	594	21	2	50	2	PASK	2	242046028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54232	242046028	1153345	4135	12286											
PASK	23178	broad.mit.edu	37	chr2	242065572	242065572	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccccactgcactgtgctctGggagcaccacacttcttcct	7	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242065572	C	C	242065572	1	2	9	0	1	0	0	0	0	0	0	0	11566	1363	47	4		4	PASK	2	242065572	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19544	242065572	1133801	4136	12287											
PASK	23178	broad.mit.edu	37	chr2	242066369	242066369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcaggtctgcagctcttctCggtcgttttccactcccagc	9	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242066369	A	A	242066369	3	1	9	1	0	0	0	0	1	0	0	0	11566	884	31	3	2046	3	PASK	2	242066369	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	797	242066369	1133004	4137	12288											
PASK	23178	broad.mit.edu	37	chr2	242066415	242066415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctagagtaggtgtccCaaacgagaggcctgccatcc	10	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242066415	A	A	242066415	3	1	9	1	0	0	0	0	1	0	0	0	11566	594	21	2	2092	2	PASK	2	242066415	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46	242066415	1132958	4138	12289											
PPP1R7	5510	broad.mit.edu	37	chr2	242092900	242092900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggttcagttgacaggcGggtcgagtctgaagaatccg	16	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242092900	T	T	242092900	3	4	9	1	0	0	0	0	1	0	0	0	12477	1116	39	1	68	1	PPP1R7	2	242092900	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26485	242092900	1106473	4139	12290											
PPP1R7	5510	broad.mit.edu	37	chr2	242098611	242098611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctgtgtcaattgtccCttttcccatcccccagactc	5	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242098611	A	A	242098611	1	1	9	0	1	0	0	0	0	0	0	0	12477	696	24	2		2	PPP1R7	2	242098611	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5711	242098611	1100762	4140	12291											
ANO7	50636	broad.mit.edu	37	chr2	242149906	242149906	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgcatcgccagcctcacGgggtctgtagtgaacctcgt	11	14	3	1	rs138190598	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242149906	T	T	242149906	2	4	9	1	0	0	0	0	0	0	0	1	702	1103	39	1		1	ANO7	2	242149906	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	51295	242149906	1049467	4141	12292											
HDLBP	3069	broad.mit.edu	37	chr2	242186119	242186119	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctcaatcttagaggctGttagagattttactggagga	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242186119	A	A	242186119	1	1	9	0	1	0	0	0	0	0	0	0	7092	1392	48	4		4	HDLBP	2	242186119	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36213	242186119	1013254	4142	12293											
HDLBP	3069	broad.mit.edu	37	chr2	242194461	242194461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaggtgaaaaacgtgtcCttacctttggcatctgctga	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242194461	A	A	242194461	1	1	9	0	1	0	0	0	0	0	0	0	7092	696	24	2		2	HDLBP	2	242194461	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8342	242194461	1004912	4143	12294											
SEPT2	4735	broad.mit.edu	37	chr2	242283122	242283122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgttgccagtgaactctgGggttccctgtgtggagcctg	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242283122	T	T	242283122	1	4	9	0	1	0	0	0	0	0	0	0	14177	1247	43	2		2	SEPT2	2	242283122	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	88661	242283122	916251	4144	12295											
STK25	10494	broad.mit.edu	37	chr2	242437745	242437745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatggggccctgctcccCgtcctccgcctcgccatcac	9	21	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242437745	A	A	242437745	3	1	9	1	0	0	0	0	1	0	0	0	15412	652	23	1	359	1	STK25	2	242437745	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154623	242437745	761628	4145	12296											
THAP4	51078	broad.mit.edu	37	chr2	242572875	242572875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtacgaatgaagtgagcCgataaatttgcacgccccag	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242572875	A	A	242572875	3	1	9	1	0	0	0	0	1	0	0	0	15969	652	23	1	1064	1	THAP4	2	242572875	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	135130	242572875	626498	4146	12297											
DTYMK	1841	broad.mit.edu	37	chr2	242625223	242625223	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaaaaaagcaggtgcaccGagtgatcctccacgtcactt	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242625223	T	T	242625223	4	4	9	1	0	0	0	0	0	1	0	0	4838	1059	37	3	454	3	DTYMK	2	242625223	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52348	242625223	574150	4147	12298											
ING5	84289	broad.mit.edu	37	chr2	242648601	242648601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcatggtgtcttgtgcaGggctagcttttcccccattt	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242648601	T	T	242648601	1	4	9	0	1	0	0	0	0	0	0	0	7809	1015	35	2		2	ING5	2	242648601	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23378	242648601	550772	4148	12299											
ING5	84289	broad.mit.edu	37	chr2	242664462	242664462	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaggaggagctgtgtgccCggatccgaggagcaagttaa	16	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242664462	A	A	242664462	1	1	9	0	1	0	0	0	0	0	0	0	7809	667	23	1		1	ING5	2	242664462	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	15861	242664462	534911	4149	12300											
C2orf85	285093	broad.mit.edu	37	chr2	242815211	242815211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcaatggctgcttctccCaaggctattaccagaagagg	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242815211	A	A	242815211	3	1	9	1	0	0	0	0	1	0	0	0	2222	595	21	2	1510	2	C2orf85	2	242815211	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	150749	242815211	384162	4150	12301											
C2orf85	285093	broad.mit.edu	37	chr2	242815413	242815413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaccccgggatctaccCgcagcaagtgtgacgccccg	12	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242815413	A	A	242815413	3	1	9	1	0	0	0	0	1	0	0	0	2222	652	23	1	1712	1	C2orf85	2	242815413	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	202	242815413	383960	4151	12302											
C2orf85	285093	broad.mit.edu	37	chr2	242815432	242815432	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcagcaagtgtgacgcccCgaagttcaggcaaccctcgc	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242815432	A	A	242815432	1	1	9	0	1	0	0	0	0	0	0	0	2222	667	23	1		1	C2orf85	2	242815432	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	242815432	383941	4152	12303											
CNTN6	27255	broad.mit.edu	37	chr3	1363383	1363383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacgggagcccgttgccaGggaaagtcaagtacagcaaa	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1363383	T	T	1363383	3	4	9	1	0	0	0	0	1	0	0	0	3677	1000	35	2	837	2	CNTN6	3	1363383	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08		1363383	196659047	4153	12304											
CNTN6	27255	broad.mit.edu	37	chr3	1415408	1415408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatttactattcagactcGgacaccattttctgtgggtt	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1415408	T	T	1415408	3	4	9	1	0	0	0	0	1	0	0	0	3677	1116	39	1	1961	1	CNTN6	3	1415408	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52025	1415408	196607022	4154	12305											
CNTN6	27255	broad.mit.edu	37	chr3	1424778	1424778	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcatcccactgtctccCtttgaagtcaaagtgggtgt	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1424778	A	A	1424778	2	1	9	1	0	0	0	0	0	0	0	1	3677	668	24	2		2	CNTN6	3	1424778	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9370	1424778	196597652	4155	12306											
CNTN4	152330	broad.mit.edu	37	chr3	2928832	2928832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccctaattttcagcaggaGgatgctggtttatatgaatg	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2928832	T	T	2928832	3	4	9	1	0	0	0	0	1	0	0	0	3675	991	35	2	890	2	CNTN4	3	2928832	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1504054	2928832	195093598	4156	12307											
CNTN4	152330	broad.mit.edu	37	chr3	2967387	2967387	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggaggtgaagttgtcattGagtgtaagccaaaagcgtct	14	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2967387	T	T	2967387	4	4	9	1	0	0	0	0	0	1	0	0	3675	1291	45	3	1320	3	CNTN4	3	2967387	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38555	2967387	195055043	4157	12308											
CNTN4	152330	broad.mit.edu	37	chr3	3079025	3079025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagctcgtgagtagcaccCgagattcagatcatctgttc	10	10	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3079025	A	A	3079025	1	1	9	0	1	0	0	0	0	0	0	0	3675	667	23	1		1	CNTN4	3	3079025	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	111638	3079025	194943405	4158	12309											
IL5RA	3568	broad.mit.edu	37	chr3	3111975	3111975	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacagatgacttcaatttcCgtctcactggacccagcttt	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3111975	A	A	3111975	2	1	9	1	0	0	0	0	0	0	0	1	7770	639	23	1		1	IL5RA	3	3111975	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32950	3111975	194910455	4159	12310											
TRNT1	51095	broad.mit.edu	37	chr3	3170774	3170774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtgctgaaccgtaggtGgagtaggctgtgccttccga	15	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3170774	T	T	3170774	3	4	9	1	0	0	0	0	1	0	0	0	16698	1357	47	2	52	2	TRNT1	3	3170774	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58799	3170774	194851656	4160	12311											
CRBN	51185	broad.mit.edu	37	chr3	3209447	3209447	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaaggcaacacacattcGggaagaatttgcactttagc	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3209447	T	T	3209447	2	4	9	1	0	0	0	0	0	0	0	1	3883	1103	39	1		1	CRBN	3	3209447	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38673	3209447	194812983	4161	12312											
LRRN1	57633	broad.mit.edu	37	chr3	3887493	3887493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccaacaaaaccaacatcCgcttcatggagcccctgtcc	5	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3887493	A	A	3887493	3	1	9	1	0	0	0	0	1	0	0	0	9121	652	23	1	1170	1	LRRN1	3	3887493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	678046	3887493	194134937	4162	12313											
LRRN1	57633	broad.mit.edu	37	chr3	3887939	3887939	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagacagaatcccattcCatcttagtgtcctggaaagt	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3887939	A	A	3887939	2	1	9	1	0	0	0	0	0	0	0	1	9121	581	21	2		2	LRRN1	3	3887939	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	446	3887939	194134491	4163	12314											
SUMF1	285362	broad.mit.edu	37	chr3	4418058	4418058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttcactcggtctttccCagaagggggacctttctaca	8	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4418058	A	A	4418058	3	1	9	1	0	0	0	0	1	0	0	0	15503	594	21	2	162	2	SUMF1	3	4418058	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	530119	4418058	193604372	4164	12315											
ITPR1	3708	broad.mit.edu	37	chr3	4706868	4706868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagactgcggtgatggccCaatgcttcggctggaagagc	14	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4706868	A	A	4706868	3	1	9	1	0	0	0	0	1	0	0	0	7990	594	21	2	1659	2	ITPR1	3	4706868	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	288810	4706868	193315562	4165	12316											
ITPR1	3708	broad.mit.edu	37	chr3	4716841	4716841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatccttctggccatattGgactgtgtacatgtgacaac	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4716841	T	T	4716841	3	4	9	1	0	0	0	0	1	0	0	0	7990	1339	47	2	2770	2	ITPR1	3	4716841	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9973	4716841	193305589	4166	12317											
ITPR1	3708	broad.mit.edu	37	chr3	4816935	4816935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaattgcagaacttcctcCgttgccaaaataacaagacc	5	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4816935	A	A	4816935	3	1	9	1	0	0	0	0	1	0	0	0	7990	652	23	1	6167	1	ITPR1	3	4816935	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100094	4816935	193205495	4167	12318											
ITPR1	3708	broad.mit.edu	37	chr3	4842246	4842246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgactgatattttcagtcGggttacaacccacgttgttt	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4842246	T	T	4842246	3	4	9	1	0	0	0	0	1	0	0	0	7990	1116	39	1	7275	1	ITPR1	3	4842246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25311	4842246	193180184	4168	12319											
ITPR1	3708	broad.mit.edu	37	chr3	4856818	4856818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcttaacctgatttttGgggttatcattgacactttt	7	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4856818	T	T	4856818	3	4	9	1	0	0	0	0	1	0	0	0	7990	1348	47	2	8009	2	ITPR1	3	4856818	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14572	4856818	193165612	4169	12320											
BHLHE40	8553	broad.mit.edu	37	chr3	5023257	5023257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtgcaaatagagagccCgtgggctcaacatctgatgt	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5023257	A	A	5023257	1	1	9	0	1	0	0	0	0	0	0	0	1429	667	23	1		1	BHLHE40	3	5023257	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	166439	5023257	192999173	4170	12321											
BHLHE40	8553	broad.mit.edu	37	chr3	5024503	5024503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgaaacgttttccttcGgatttttctttccccaggtg	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5024503	T	T	5024503	1	4	9	0	1	0	0	0	0	0	0	0	1429	1131	39	1		1	BHLHE40	3	5024503	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1246	5024503	192997927	4171	12322											
ARL8B	55207	broad.mit.edu	37	chr3	5213859	5213859	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacataggaggacaacccCgatttcgaagcatgtgggag	15	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5213859	A	A	5213859	2	1	9	1	0	0	0	0	0	0	0	1	951	644	23	1		1	ARL8B	3	5213859	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	189356	5213859	192808571	4172	12323											
GRM7	2917	broad.mit.edu	37	chr3	7620458	7620458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgacacgcccattgtccGggcatctgggcgggaactca	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7620458	T	T	7620458	3	4	9	1	0	0	0	0	1	0	0	0	6868	1116	39	1	1895	1	GRM7	3	7620458	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2406599	7620458	190401972	4173	12324											
GRM7	2917	broad.mit.edu	37	chr3	7620495	7620495	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctatgttcttttgacGggcatctttctttgctacat	7	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7620495	T	T	7620495	2	4	9	1	0	0	0	0	0	0	0	1	6868	1103	39	1		1	GRM7	3	7620495	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	7620495	190401935	4174	12325											
GRM7	2917	broad.mit.edu	37	chr3	7620936	7620936	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaagactcggggtgtaccCgagaattttaacgaagccaa	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7620936	G	G	7620936	2	3	9	1	0	0	0	0	0	0	0	1	6868	639	23	4		4	GRM7	3	7620936	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	441	7620936	190401494	4175	12326											
LMCD1	29995	broad.mit.edu	37	chr3	8578990	8578990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattccaccctcactgctcGggtgaaaggcggggacggca	14	12	1	1	rs140821327		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8578990	T	T	8578990	3	4	9	1	0	0	0	0	1	0	0	0	8918	1116	39	1	261	1	LMCD1	3	8578990	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	958054	8578990	189443440	4176	12327											
LMCD1	29995	broad.mit.edu	37	chr3	8579032	8579032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggatttacaagaggaaccGgatgatcatgaccaacccta	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8579032	T	T	8579032	3	4	9	1	0	0	0	0	1	0	0	0	8918	1116	39	1	303	1	LMCD1	3	8579032	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42	8579032	189443398	4177	12328											
LMCD1	29995	broad.mit.edu	37	chr3	8590471	8590471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggagaagtggccctccCggggcagggtggcttgccca	18	12	0	1	rs143760169		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8590471	A	A	8590471	3	1	9	1	0	0	0	0	1	0	0	0	8918	652	23	1	619	1	LMCD1	3	8590471	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11439	8590471	189431959	4178	12329											
C3orf32	51066	broad.mit.edu	37	chr3	8667334	8667334	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaaacaagctgttcttcCtggagggaaggaggatgagg	14	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8667334	A	A	8667334	5	1	9	1	0	0	0	0	0	0	1	0	2244	695	24	2	372	2	C3orf32	3	8667334	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	76863	8667334	189355096	4179	12330											
RAD18	56852	broad.mit.edu	37	chr3	8922998	8922998	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtggcaaccaaaagtacGgtattctaatcaatgcattt	7	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8922998	T	T	8922998	1	4	9	0	1	0	0	0	0	0	0	0	13088	1131	39	1		1	RAD18	3	8922998	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	255664	8922998	189099432	4180	12331											
SRGAP3	9901	broad.mit.edu	37	chr3	9068604	9068604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgctgaaaacactggccCaagatccagcttaccatata	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9068604	A	A	9068604	1	1	9	0	1	0	0	0	0	0	0	0	15265	609	21	2		2	SRGAP3	3	9068604	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145606	9068604	188953826	4181	12332											
SRGAP3	9901	broad.mit.edu	37	chr3	9068673	9068673	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaagcggtatagcttgtcCtgaatccttgagaaaagaaa	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9068673	A	A	9068673	4	1	9	1	0	0	0	0	0	1	0	0	15265	690	24	2	1793	2	SRGAP3	3	9068673	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69	9068673	188953757	4182	12333											
THUMPD3	25917	broad.mit.edu	37	chr3	9406960	9406960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcaaaatcagcagagacCgtggcaagatatattttgtc	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9406960	A	A	9406960	3	1	9	1	0	0	0	0	1	0	0	0	16007	652	23	1	210	1	THUMPD3	3	9406960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	338287	9406960	188615470	4183	12334											
THUMPD3	25917	broad.mit.edu	37	chr3	9412654	9412654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaccagtgtcccccacGgataccaactgtccataagc	8	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9412654	T	T	9412654	1	4	9	0	1	0	0	0	0	0	0	0	16007	1131	39	1		1	THUMPD3	3	9412654	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5694	9412654	188609776	4184	12335											
THUMPD3	25917	broad.mit.edu	37	chr3	9416266	9416266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgaagagagtctccacCgaagaaatataacacatttt	7	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9416266	A	A	9416266	2	1	9	1	0	0	0	0	0	0	0	1	16007	644	23	1		1	THUMPD3	3	9416266	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3612	9416266	188606164	4185	12336											
THUMPD3	25917	broad.mit.edu	37	chr3	9425919	9425919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatccaagaagagaaactGgaacctttatccagcttgcc	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9425919	T	T	9425919	3	4	9	1	0	0	0	0	1	0	0	0	16007	1357	47	2	1289	2	THUMPD3	3	9425919	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9653	9425919	188596511	4186	12337											
THUMPD3	25917	broad.mit.edu	37	chr3	9425943	9425943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttatccagcttgcctacGggagatgagccgtgtctgca	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9425943	T	T	9425943	3	4	9	1	0	0	0	0	1	0	0	0	16007	1116	39	1	1313	1	THUMPD3	3	9425943	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	9425943	188596487	4187	12338											
MTMR14	64419	broad.mit.edu	37	chr3	9695404	9695404	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatctgtggccactatcccCggcacatcgtgttcctggag	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9695404	A	A	9695404	2	1	9	1	0	0	0	0	0	0	0	1	10036	643	23	1		1	MTMR14	3	9695404	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	269461	9695404	188327026	4188	12339											
MTMR14	64419	broad.mit.edu	37	chr3	9703963	9703963	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttaggtttgagagtacCgtacaggtgagcaagttgca	14	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9703963	A	A	9703963	2	1	9	1	0	0	0	0	0	0	0	1	10036	639	23	1		1	MTMR14	3	9703963	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8559	9703963	188318467	4189	12340											
CPNE9	151835	broad.mit.edu	37	chr3	9747679	9747679	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgcataggatttcctGggacaagcgttcctggccct	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9747679	T	T	9747679	2	4	9	1	0	0	0	0	0	0	0	1	3851	1335	47	2		2	CPNE9	3	9747679	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43716	9747679	188274751	4190	12341											
BRPF1	7862	broad.mit.edu	37	chr3	9781178	9781178	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtctgcttcgccaacacGgtcttcctagagcctattga	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9781178	T	T	9781178	2	4	9	1	0	0	0	0	0	0	0	1	1529	1103	39	1		1	BRPF1	3	9781178	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33499	9781178	188241252	4191	12342											
OGG1	4968	broad.mit.edu	37	chr3	9798524	9798524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtacctaggtgtcctccCtaggtttcctctcctccagc	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9798524	A	A	9798524	1	1	9	0	1	0	0	0	0	0	0	0	10940	668	24	2		2	OGG1	3	9798524	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	17346	9798524	188223906	4192	12343											
OGG1	4968	broad.mit.edu	37	chr3	9807436	9807436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagggaaaggctgtggccCacgcacttgtgcaggacagc	16	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9807436	A	A	9807436	1	1	9	0	1	0	0	0	0	0	0	0	10940	609	21	2		2	OGG1	3	9807436	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8912	9807436	188214994	4193	12344											
OGG1	4968	broad.mit.edu	37	chr3	9807580	9807580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgagaaggcccccctatcGggagaggggattcacaaggt	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9807580	T	T	9807580	3	4	9	1	0	0	0	0	1	0	0	0	10940	1116	39	1	1482	1	OGG1	3	9807580	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	144	9807580	188214850	4194	12345											
TADA3	10474	broad.mit.edu	37	chr3	9822123	9822123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttcttggtgggagtcCgcttcttctgccgggcagcc	12	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9822123	A	A	9822123	3	1	9	1	0	0	0	0	1	0	0	0	15631	652	23	1	85	1	TADA3	3	9822123	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14543	9822123	188200307	4195	12346											
TTLL3	26140	broad.mit.edu	37	chr3	9868752	9868752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccgtggtgatgaaggacGgcaagtgggtggtgcagaag	18	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9868752	T	T	9868752	3	4	9	1	0	0	0	0	1	0	0	0	16854	1116	39	1	976	1	TTLL3	3	9868752	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46629	9868752	188153678	4196	12347											
TTLL3	26140	broad.mit.edu	37	chr3	9868849	9868849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtaactgactggaaccCacttaccgtgtggttctacc	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9868849	A	A	9868849	3	1	9	1	0	0	0	0	1	0	0	0	16854	594	21	2	1073	2	TTLL3	3	9868849	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	97	9868849	188153581	4197	12348											
RPUSD3	285367	broad.mit.edu	37	chr3	9885196	9885196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcatcaaccagctcctccCgactgaggttttttggcagc	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9885196	A	A	9885196	3	1	9	1	0	0	0	0	1	0	0	0	13779	652	23	1	872	1	RPUSD3	3	9885196	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16347	9885196	188137234	4198	12349											
JAGN1	84522	broad.mit.edu	37	chr3	9932426	9932426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcgtctcgagcaggccCgcgagcggccggcaccgacg	16	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9932426	A	A	9932426	3	1	9	1	0	0	0	0	1	0	0	0	8006	652	23	1	22	1	JAGN1	3	9932426	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47230	9932426	188090004	4199	12350											
IL17RE	132014	broad.mit.edu	37	chr3	9945799	9945799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgagtctggcactgttccCgctgtttgtgccagcatctg	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9945799	A	A	9945799	3	1	9	1	0	0	0	0	1	0	0	0	7713	652	23	1	242	1	IL17RE	3	9945799	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13373	9945799	188076631	4200	12351											
IL17RE	132014	broad.mit.edu	37	chr3	9948681	9948681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttgctgcctgaggcccGggctattcgggtgaccatat	13	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9948681	T	T	9948681	3	4	9	1	0	0	0	0	1	0	0	0	7713	1116	39	1	585	1	IL17RE	3	9948681	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2882	9948681	188073749	4201	12352											
IL17RC	84818	broad.mit.edu	37	chr3	9969873	9969873	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctctggaacctgactcCgttaggacgaacatctgccc	10	14	2	1	rs114325315	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9969873	A	A	9969873	2	1	9	1	0	0	0	0	0	0	0	1	7711	639	23	1		1	IL17RC	3	9969873	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21192	9969873	188052557	4202	12353											
IL17RC	84818	broad.mit.edu	37	chr3	9971530	9971530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctaaccatggtctcttccCagcaggtgaacagctcggag	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9971530	A	A	9971530	1	1	9	0	1	0	0	0	0	0	0	0	7711	609	21	2		2	IL17RC	3	9971530	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1657	9971530	188050900	4203	12354											
TMEM111	55831	broad.mit.edu	37	chr3	10018670	10018670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggtggcactaccttcCgtttagtttttttgaaaaat	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10018670	A	A	10018670	3	1	9	1	0	0	0	0	1	0	0	0	16151	652	23	1	531	1	TMEM111	3	10018670	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47140	10018670	188003760	4204	12355											
FANCD2	2177	broad.mit.edu	37	chr3	10076217	10076217	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagacacccttcctatccCaaagtatgtatttttcccct	5	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10076217	A	A	10076217	2	1	9	1	0	0	0	0	0	0	0	1	5722	581	21	2		2	FANCD2	3	10076217	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57547	10076217	187946213	4205	12356											
FANCD2	2177	broad.mit.edu	37	chr3	10088331	10088331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaagaagtacattgacaGggtgctaagaaataagattc	10	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10088331	T	T	10088331	3	4	9	1	0	0	0	0	1	0	0	0	5722	1000	35	2	1256	2	FANCD2	3	10088331	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12114	10088331	187934099	4206	12357											
FANCD2	2177	broad.mit.edu	37	chr3	10115087	10115087	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgaaggtttgtgacatccCagtgagattaacagaaaccc	10	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10115087	G	G	10115087	1	3	9	0	1	0	0	0	0	0	0	0	5722	609	21	4		4	FANCD2	3	10115087	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26756	10115087	187907343	4207	12358											
FANCD2	2177	broad.mit.edu	37	chr3	10130577	10130577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgctggtgttggtgtccCagaactgatcaactctccta	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10130577	A	A	10130577	3	1	9	1	0	0	0	0	1	0	0	0	5722	594	21	2	3764	2	FANCD2	3	10130577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15490	10130577	187891853	4208	12359											
FANCD2	2177	broad.mit.edu	37	chr3	10136021	10136021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagcaatgtatgccgctcCtagacttcagttttagaaaa	8	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10136021	A	A	10136021	3	1	9	1	0	0	0	0	1	0	0	0	5722	680	24	2	4091	2	FANCD2	3	10136021	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5444	10136021	187886409	4209	12360											
C3orf24	115795	broad.mit.edu	37	chr3	10146114	10146114	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaaactctgaaagtcccGgtccactttggtggctgagc	11	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10146114	T	T	10146114	2	4	9	1	0	0	0	0	0	0	0	1	2239	1103	39	1		1	C3orf24	3	10146114	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10093	10146114	187876316	4210	12361											
VHL	7428	broad.mit.edu	37	chr3	10188224	10188224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggctcttcagagatgcaGggacacacgatgggcttctg	13	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10188224	T	T	10188224	3	4	9	1	0	0	0	0	1	0	0	0	17289	1000	35	2	373	2	VHL	3	10188224	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42110	10188224	187834206	4211	12362											
IRAK2	3656	broad.mit.edu	37	chr3	10280468	10280468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtggaagagcggctcCgaggtcgggagacgttgctc	17	10	0	2	rs137894595		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10280468	A	A	10280468	2	1	9	1	0	0	0	0	0	0	0	1	7893	644	23	1		1	IRAK2	3	10280468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92244	10280468	187741962	4212	12363											
TATDN2	9797	broad.mit.edu	37	chr3	10320029	10320029	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttcccaacatgtctgtGggcttcacggcagtgctgac	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10320029	T	T	10320029	2	4	9	1	0	0	0	0	0	0	0	1	15711	1335	47	2		2	TATDN2	3	10320029	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39561	10320029	187702401	4213	12364											
SEC13	6396	broad.mit.edu	37	chr3	10342987	10342987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcactgatgctgatacGgagccctggcccttgttgac	11	12	2	3	rs139150328	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10342987	T	T	10342987	2	4	9	1	0	0	0	0	0	0	0	1	14093	1103	39	1		1	SEC13	3	10342987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22958	10342987	187679443	4214	12365											
SEC13	6396	broad.mit.edu	37	chr3	10361017	10361017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtctgcaaaggcaagtaaGgacaataaggagtttcctcc	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10361017	T	T	10361017	1	4	9	0	1	0	0	0	0	0	0	0	14093	1015	35	2		2	SEC13	3	10361017	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18030	10361017	187661413	4215	12366											
ATP2B2	491	broad.mit.edu	37	chr3	10430081	10430081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagccctccatcacgtGggttcctgggaaaggggaca	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10430081	T	T	10430081	3	4	9	1	0	0	0	0	1	0	0	0	1144	1348	47	2	3016	2	ATP2B2	3	10430081	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69064	10430081	187592349	4216	12367											
ATP2B2	491	broad.mit.edu	37	chr3	10452318	10452318	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccttcgttgccctcgccGggcgggtggtagaaggacag	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10452318	T	T	10452318	2	4	9	1	0	0	0	0	0	0	0	1	1144	1103	39	1		1	ATP2B2	3	10452318	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22237	10452318	187570112	4217	12368											
ATP2B2	491	broad.mit.edu	37	chr3	10452492	10452492	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtctggagcggtgccCggcaaacctgtggacagaga	15	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10452492	A	A	10452492	2	1	9	1	0	0	0	0	0	0	0	1	1144	639	23	1		1	ATP2B2	3	10452492	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	174	10452492	187569938	4218	12369											
SLC6A11	6538	broad.mit.edu	37	chr3	10916671	10916671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacgtgactgcgacattccCctacatcatgctgctgatcc	7	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10916671	A	A	10916671	3	1	9	1	0	0	0	0	1	0	0	0	14788	623	22	2	804	2	SLC6A11	3	10916671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	464179	10916671	187105759	4219	12370											
SLC6A11	6538	broad.mit.edu	37	chr3	10953779	10953779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgccttcctacaggtctGggtagatgctggaacgcaga	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10953779	T	T	10953779	3	4	9	1	0	0	0	0	1	0	0	0	14788	1357	47	2	922	2	SLC6A11	3	10953779	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37108	10953779	187068651	4220	12371											
SLC6A11	6538	broad.mit.edu	37	chr3	10967724	10967724	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattgcgtaccccaaggcGgtcaccatgatgcctctctc	8	14	2	1	rs147839581	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10967724	T	T	10967724	2	4	9	1	0	0	0	0	0	0	0	1	14788	1103	39	1		1	SLC6A11	3	10967724	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13945	10967724	187054706	4221	12372											
SLC6A11	6538	broad.mit.edu	37	chr3	10976642	10976642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctggctagtctgttcctGggcctcagacccctcatggc	10	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10976642	T	T	10976642	1	4	9	0	1	0	0	0	0	0	0	0	14788	1363	47	2		2	SLC6A11	3	10976642	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8918	10976642	187045788	4222	12373											
SLC6A11	6538	broad.mit.edu	37	chr3	10976836	10976836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccatgctctgcatccCgctctggatctgcatcacag	8	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10976836	A	A	10976836	3	1	9	1	0	0	0	0	1	0	0	0	14788	652	23	1	1747	1	SLC6A11	3	10976836	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	194	10976836	187045594	4223	12374											
SLC6A11	6538	broad.mit.edu	37	chr3	10976856	10976856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctggatctgcatcacaGtgtggaagacggaggggaca	15	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10976856	T	T	10976856	3	4	9	1	0	0	0	0	1	0	0	0	14788	1029	36	3	1767	3	SLC6A11	3	10976856	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	10976856	187045574	4224	12375											
SLC6A1	6529	broad.mit.edu	37	chr3	11072823	11072823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggatgcagtgggcgccGgggacaatgcacctgttctc	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11072823	T	T	11072823	1	4	9	0	1	0	0	0	0	0	0	0	14787	1131	39	1		1	SLC6A1	3	11072823	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	95967	11072823	186949607	4225	12376											
HRH1	3269	broad.mit.edu	37	chr3	11276131	11276131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaccccttgatctcctcCgtgctatagtggaagcagga	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11276131	A	A	11276131	1	1	9	0	1	0	0	0	0	0	0	0	7422	667	23	1		1	HRH1	3	11276131	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	203308	11276131	186746299	4226	12377											
HRH1	3269	broad.mit.edu	37	chr3	11301041	11301041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctcttttggctttccatGgactatgtggccagcacagc	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11301041	T	T	11301041	3	4	9	1	0	0	0	0	1	0	0	0	7422	1348	47	2	320	2	HRH1	3	11301041	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24910	11301041	186721389	4227	12378											
HRH1	3269	broad.mit.edu	37	chr3	11301102	11301102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtgcattgatcgctacCgctctgtccagcagcccctc	8	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11301102	A	A	11301102	3	1	9	1	0	0	0	0	1	0	0	0	7422	652	23	1	381	1	HRH1	3	11301102	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	11301102	186721328	4228	12379											
HRH1	3269	broad.mit.edu	37	chr3	11301933	11301933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaagacagtatgtatctGggttgcacatgaaccgcgaa	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11301933	T	T	11301933	3	4	9	1	0	0	0	0	1	0	0	0	7422	1348	47	2	1212	2	HRH1	3	11301933	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	831	11301933	186720497	4229	12380											
ATG7	10533	broad.mit.edu	37	chr3	11340445	11340445	+	Intron	DEL	C	-	-													cttttataatcagtgctcttCactagtttctattttacttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11340445	-	-	11340445	6	5	9	0	1	1	0	1	0	0	0	0	1105	841	29	0		0	ATG7	3	11340445	Intron	DEL	C	TCGA-05-4396-01A-21D-1855-08	38512	11340445	186681985	4230	12381											
ATG7	10533	broad.mit.edu	37	chr3	11389503	11389503	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctccagaaaatattcccCggtgtggtatgttgttgctt	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11389503	A	A	11389503	2	1	9	1	0	0	0	0	0	0	0	1	1105	639	23	1		1	ATG7	3	11389503	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49058	11389503	186632927	4231	12382											
ATG7	10533	broad.mit.edu	37	chr3	11389565	11389565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtataaatgtttaagtcttGggaaatgaggcctgtggcat	12	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11389565	T	T	11389565	1	4	9	0	1	0	0	0	0	0	0	0	1105	1363	47	2		2	ATG7	3	11389565	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	62	11389565	186632865	4232	12383											
ATG7	10533	broad.mit.edu	37	chr3	11421484	11421484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtttgataatgtccttccCgtcagcctggcatttgacaa	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11421484	A	A	11421484	2	1	9	1	0	0	0	0	0	0	0	1	1105	639	23	1		1	ATG7	3	11421484	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31919	11421484	186600946	4233	12384											
TSEN2	80746	broad.mit.edu	37	chr3	12545011	12545011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtggtgtgggtgatcccCgtgagccattaggctgcctg	16	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12545011	A	A	12545011	3	1	9	1	0	0	0	0	1	0	0	0	16737	652	23	1	573	1	TSEN2	3	12545011	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1123527	12545011	185477419	4234	12385											
MKRN2	23609	broad.mit.edu	37	chr3	12623673	12623674	+	Missense_Mutation	DNP	CC	AA	AA													ccgagaaagccggcatgtccCcaacaatgaagatgtcgaca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	12623674	AA	AA	12623673	3	1	9	1	0	0	0	0	1	0	0	0	9700	623	22	2	1202	2	MKRN2	3	12623673	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	78662	12623673	185398757	4235	12386											
RAF1	5894	broad.mit.edu	37	chr3	12641688	12641688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcccagatactggtgccCgctctctttgtgctggcacg	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12641688	A	A	12641688	3	1	9	1	0	0	0	0	1	0	0	0	13110	652	23	1	1029	1	RAF1	3	12641688	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18015	12641688	185380742	4236	12387											
RAF1	5894	broad.mit.edu	37	chr3	12660046	12660046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttcggcaagaaaacacGgatagtgttgcttgtcttag	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12660046	T	T	12660046	3	4	9	1	0	0	0	0	1	0	0	0	13110	1116	39	1	1835	1	RAF1	3	12660046	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18358	12660046	185362384	4237	12388											
TMEM40	55287	broad.mit.edu	37	chr3	12790023	12790023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcacatgtagacagatcGgctctagaagagaatgtgga	13	6	1	4	rs115262020	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12790023	T	T	12790023	1	4	9	0	1	0	0	0	0	0	0	0	16286	1131	39	1		1	TMEM40	3	12790023	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	129977	12790023	185232407	4238	12389											
TMEM40	55287	broad.mit.edu	37	chr3	12790102	12790102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgggggattatttcccCatgtaaatctttttcttgaa	8	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12790102	A	A	12790102	1	1	9	0	1	0	0	0	0	0	0	0	16286	609	21	2		2	TMEM40	3	12790102	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	12790102	185232328	4239	12390											
CAND2	23066	broad.mit.edu	37	chr3	12858942	12858942	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcgccccactccagcacGggggtcaaggtcctggcatt	13	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12858942	T	T	12858942	2	4	9	1	0	0	0	0	0	0	0	1	2642	1103	39	1		1	CAND2	3	12858942	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68840	12858942	185163488	4240	12391											
CAND2	23066	broad.mit.edu	37	chr3	12872958	12872958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaccatctccttcctctGggcagatgctgaccttcatc	7	14	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12872958	T	T	12872958	1	4	9	0	1	0	0	0	0	0	0	0	2642	1363	47	2		2	CAND2	3	12872958	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14016	12872958	185149472	4241	12392											
RPL32	6161	broad.mit.edu	37	chr3	12880958	12880958	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttccataaccaatgttGggcatcaagatctggccctt	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12880958	T	T	12880958	2	4	9	1	0	0	0	0	0	0	0	1	13693	1335	47	2		2	RPL32	3	12880958	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8000	12880958	185141472	4242	12393											
IQSEC1	9922	broad.mit.edu	37	chr3	12957174	12957174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctttagctctcgcttacGgatccgttcatagatcccca	8	13	3	1	rs141163963		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12957174	T	T	12957174	3	4	9	1	0	0	0	0	1	0	0	0	7887	1116	39	1	1346	1	IQSEC1	3	12957174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	76216	12957174	185065256	4243	12394											
IQSEC1	9922	broad.mit.edu	37	chr3	13094549	13094549	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttttcatccgaatccacGggggaatgggacgattttgc	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13094549	T	T	13094549	1	4	9	0	1	0	0	0	0	0	0	0	7887	1131	39	1		1	IQSEC1	3	13094549	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	137375	13094549	184927881	4244	12395											
NUP210	23225	broad.mit.edu	37	chr3	13363298	13363298	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcttccgctgcttgtcCgtcagcctgtgcattgtgat	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13363298	A	A	13363298	2	1	9	1	0	0	0	0	0	0	0	1	10855	639	23	1		1	NUP210	3	13363298	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	268749	13363298	184659132	4245	12396											
NUP210	23225	broad.mit.edu	37	chr3	13363377	13363377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgtcccctctcctgccCgtgcactgatgtcatttctt	7	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13363377	A	A	13363377	1	1	9	0	1	0	0	0	0	0	0	0	10855	667	23	1		1	NUP210	3	13363377	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	13363377	184659053	4246	12397											
NUP210	23225	broad.mit.edu	37	chr3	13419063	13419063	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagggtgaacagtgaaccCtaaaacaggcagagggagcc	13	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13419063	A	A	13419063	5	1	9	1	0	0	0	0	0	0	1	0	10855	695	24	2	4746	2	NUP210	3	13419063	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	55686	13419063	184603367	4247	12398											
NUP210	23225	broad.mit.edu	37	chr3	13429826	13429826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtagacagcctcctggatgcGagccttgagcttggagctcc	13	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13429826	T	T	13429826	3	4	9	1	0	0	0	0	1	0	0	0	10855	1058	37	3	5146	3	NUP210	3	13429826	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10763	13429826	184592604	4248	12399											
WNT7A	7476	broad.mit.edu	37	chr3	13896069	13896070	+	Missense_Mutation	DNP	CG	AT	AT													tgtgcaagttcatgagagtcCgggcattctgcttgatctcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	13896070	AT	AT	13896069	3	1	9	1	0	0	0	0	1	0	0	0	17521	652	23	1	527	1	WNT7A	3	13896069	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	466243	13896069	184126361	4249	12400											
XPC	7508	broad.mit.edu	37	chr3	14197934	14197934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcttcagggcatacagaGggtggttcttatataagcca	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14197934	T	T	14197934	3	4	9	1	0	0	0	0	1	0	0	0	17568	1000	35	2		2	XPC	3	14197934	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	301865	14197934	183824496	4250	12401											
SLC6A6	6533	broad.mit.edu	37	chr3	14487240	14487240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggtgcgtttctcatacCgtattttattttcctgtttg	8	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14487240	A	A	14487240	3	1	9	1	0	0	0	0	1	0	0	0	14802	652	23	1	251	1	SLC6A6	3	14487240	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	289306	14487240	183535190	4251	12402											
SLC6A6	6533	broad.mit.edu	37	chr3	14489067	14489067	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctccctcagatgtttactCatctcatttgcccaacctgc	5	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14489067	A	A	14489067	1	1	9	0	1	0	0	0	0	0	0	0	14802	841	29	3		3	SLC6A6	3	14489067	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1827	14489067	183533363	4252	12403											
SLC6A6	6533	broad.mit.edu	37	chr3	14489095	14489095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccaacctgcaggtatcGgctatgcctccgttgtaatt	9	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14489095	T	T	14489095	3	4	9	1	0	0	0	0	1	0	0	0	14802	1116	39	1	380	1	SLC6A6	3	14489095	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	14489095	183533335	4253	12404											
SLC6A6	6533	broad.mit.edu	37	chr3	14489106	14489106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtatcggctatgcctcCgttgtaattgtgtccctcct	10	12	0	0	rs137993719		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14489106	A	A	14489106	2	1	9	1	0	0	0	0	0	0	0	1	14802	639	23	1		1	SLC6A6	3	14489106	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	14489106	183533324	4254	12405											
SLC6A6	6533	broad.mit.edu	37	chr3	14509595	14509595	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacatatgtgtaacttaGggactgtatgctgctgggat	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14509595	T	T	14509595	5	4	9	1	0	0	0	0	0	0	1	0	14802	1014	35	2	1001	2	SLC6A6	3	14509595	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	20489	14509595	183512835	4255	12406											
SLC6A6	6533	broad.mit.edu	37	chr3	14518775	14518775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccatccttcctaaggaaGggttatcgtcgggaaatctt	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14518775	T	T	14518775	3	4	9	1	0	0	0	0	1	0	0	0	14802	991	35	2	1310	2	SLC6A6	3	14518775	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9180	14518775	183503655	4256	12407											
SLC6A6	6533	broad.mit.edu	37	chr3	14520642	14520642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatgattggctatcggccCgggccctggatgaagtacag	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14520642	A	A	14520642	2	1	9	1	0	0	0	0	0	0	0	1	14802	639	23	1		1	SLC6A6	3	14520642	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1867	14520642	183501788	4257	12408											
GRIP2	80852	broad.mit.edu	37	chr3	14564583	14564583	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcttcatgggcacctcCtggacaggatttgacaagaa	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14564583	A	A	14564583	5	1	9	1	0	0	0	0	0	0	1	0	6854	695	24	2	2719	2	GRIP2	3	14564583	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	43941	14564583	183457847	4258	12409											
C3orf19	51244	broad.mit.edu	37	chr3	14703203	14703203	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctcctccccaagacccCagtgaagaatggttggtaac	8	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14703203	A	A	14703203	2	1	9	1	0	0	0	0	0	0	0	1	2234	581	21	2		2	C3orf19	3	14703203	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	138620	14703203	183319227	4259	12410											
C3orf20	84077	broad.mit.edu	37	chr3	14724421	14724421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaccccgtccgacatcttGggcctggaggtcagctttgg	12	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14724421	T	T	14724421	3	4	9	1	0	0	0	0	1	0	0	0	2235	1339	47	2	203	2	C3orf20	3	14724421	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21218	14724421	183298009	4260	12411											
C3orf20	84077	broad.mit.edu	37	chr3	14745964	14745964	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagactctcagaccccGggtttacattaccctcccac	7	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14745964	T	T	14745964	2	4	9	1	0	0	0	0	0	0	0	1	2235	1103	39	1		1	C3orf20	3	14745964	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21543	14745964	183276466	4261	12412											
FGD5	152273	broad.mit.edu	37	chr3	14862792	14862792	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtccccttcagcaggacGgtgtccagagtggagtcctt	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14862792	T	T	14862792	2	4	9	1	0	0	0	0	0	0	0	1	5893	1103	39	1		1	FGD5	3	14862792	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	116828	14862792	183159638	4262	12413											
FGD5	152273	broad.mit.edu	37	chr3	14862878	14862878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacggtccatctccttccCcagcgctgacacttcagact	7	18	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14862878	A	A	14862878	3	1	9	1	0	0	0	0	1	0	0	0	5893	623	22	2	2302	2	FGD5	3	14862878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	14862878	183159552	4263	12414											
FGD5	152273	broad.mit.edu	37	chr3	14905762	14905762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagaccccagtgtcaccCacaaggtagggcaccccaca	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14905762	A	A	14905762	3	1	9	1	0	0	0	0	1	0	0	0	5893	594	21	2	2659	2	FGD5	3	14905762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42884	14905762	183116668	4264	12415											
NR2C2	7182	broad.mit.edu	37	chr3	15073949	15073949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctgtgagtctgcatccCgtctgcttttcctctcaatg	7	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15073949	A	A	15073949	3	1	9	1	0	0	0	0	1	0	0	0	10718	652	23	1	1269	1	NR2C2	3	15073949	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168187	15073949	182948481	4265	12416											
ZFYVE20	64145	broad.mit.edu	37	chr3	15115977	15115977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggctccagctgaaaaGggccgatttctctgaagtcc	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15115977	T	T	15115977	3	4	9	1	0	0	0	0	1	0	0	0	17792	1000	35	2	691	2	ZFYVE20	3	15115977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42028	15115977	182906453	4266	12417											
ZFYVE20	64145	broad.mit.edu	37	chr3	15127429	15127429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtggtcaattctagcagctCggtgttttttgaagtcggaa	12	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15127429	A	A	15127429	3	1	9	1	0	0	0	0	1	0	0	0	17792	884	31	3	2061	3	ZFYVE20	3	15127429	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11452	15127429	182895001	4267	12418											
ZFYVE20	64145	broad.mit.edu	37	chr3	15127547	15127547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctaccttgcctcttatccCagtgaatttcaaaagcaggt	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15127547	A	A	15127547	1	1	9	0	1	0	0	0	0	0	0	0	17792	609	21	2		2	ZFYVE20	3	15127547	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	118	15127547	182894883	4268	12419											
ZFYVE20	64145	broad.mit.edu	37	chr3	15131915	15131915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttcttaccaagctcctGgggttcccacatgtaaggat	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15131915	T	T	15131915	3	4	9	1	0	0	0	0	1	0	0	0	17792	1357	47	2	2114	2	ZFYVE20	3	15131915	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4368	15131915	182890515	4269	12420											
CAPN7	23473	broad.mit.edu	37	chr3	15283758	15283758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaaaaagtttattaccCaggtatgtttagtagcccag	10	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15283758	A	A	15283758	3	1	9	1	0	0	0	0	1	0	0	0	2657	594	21	2	1924	2	CAPN7	3	15283758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151843	15283758	182738672	4270	12421											
SH3BP5	9467	broad.mit.edu	37	chr3	15297672	15297672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggagagctgcttcatcCggttctccaaggcctggccc	13	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15297672	A	A	15297672	3	1	9	1	0	0	0	0	1	0	0	0	14360	652	23	1	82	1	SH3BP5	3	15297672	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13914	15297672	182724758	4271	12422											
EAF1	85403	broad.mit.edu	37	chr3	15476010	15476010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcccttgaaagataaccCctcacctgaacctcagttgg	6	14	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15476010	A	A	15476010	3	1	9	1	0	0	0	0	1	0	0	0	4915	623	22	2	505	2	EAF1	3	15476010	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	178338	15476010	182546420	4272	12423											
COLQ	8292	broad.mit.edu	37	chr3	15499734	15499734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccatacacagattcccCgtaggaagggttattcacat	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15499734	A	A	15499734	3	1	9	1	0	0	0	0	1	0	0	0	3745	652	23	1	474	1	COLQ	3	15499734	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23724	15499734	182522696	4273	12424											
COLQ	8292	broad.mit.edu	37	chr3	15512115	15512115	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggttcaccttttggaccCatttcaccctggaaagaagg	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15512115	A	A	15512115	3	1	9	1	0	0	0	0	1	0	0	0	3745	594	21	2	750	2	COLQ	3	15512115	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12381	15512115	182510315	4274	12425											
HACL1	26061	broad.mit.edu	37	chr3	15609385	15609385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctccatgccagaaaaccCaaatgcactgtctccttcca	4	16	1	1	rs145006644	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15609385	A	A	15609385	3	1	9	1	0	0	0	0	1	0	0	0	7007	594	21	2	377	2	HACL1	3	15609385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	97270	15609385	182413045	4275	12426											
BTD	686	broad.mit.edu	37	chr3	15676974	15676974	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagccagaagtaagcttgctCttttcctctgcggctgttac	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15676974	A	A	15676974	3	1	9	1	0	0	0	0	1	0	0	0	1560	913	32	3	94	3	BTD	3	15676974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67589	15676974	182345456	4276	12427											
ANKRD28	23243	broad.mit.edu	37	chr3	15749422	15749422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccactctcactcctatGgtacttacttgccatctgtg	5	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15749422	T	T	15749422	1	4	9	0	1	0	0	0	0	0	0	0	656	1363	47	2		2	ANKRD28	3	15749422	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	72448	15749422	182273008	4277	12428											
ANKRD28	23243	broad.mit.edu	37	chr3	15762580	15762580	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcactacaacatcttgtcCattatagcaggctacatgaa	5	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15762580	A	A	15762580	4	1	9	1	0	0	0	0	0	1	0	0	656	603	21	2	2497	2	ANKRD28	3	15762580	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13158	15762580	182259850	4278	12429											
GALNTL2	117248	broad.mit.edu	37	chr3	16268960	16268960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccgtgtgatggaaaagccCgccagcagtggcgttttgac	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16268960	A	A	16268960	3	1	9	1	0	0	0	0	1	0	0	0	6284	652	23	1	1911	1	GALNTL2	3	16268960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	506380	16268960	181753470	4279	12430											
OXNAD1	92106	broad.mit.edu	37	chr3	16313270	16313270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtttttccagctagacCgtttacatgtggttatgact	9	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16313270	A	A	16313270	1	1	9	0	1	0	0	0	0	0	0	0	11427	667	23	1		1	OXNAD1	3	16313270	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44310	16313270	181709160	4280	12431											
OXNAD1	92106	broad.mit.edu	37	chr3	16336423	16336423	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcaatatgctccagtccCagactgctagaacaagagag	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16336423	A	A	16336423	2	1	9	1	0	0	0	0	0	0	0	1	11427	581	21	2		2	OXNAD1	3	16336423	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23153	16336423	181686007	4281	12432											
RFTN1	23180	broad.mit.edu	37	chr3	16358350	16358350	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagactcagttttcttcaacCgtaccaagctctctgacttc	5	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16358350	A	A	16358350	2	1	9	1	0	0	0	0	0	0	0	1	13366	639	23	1		1	RFTN1	3	16358350	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21927	16358350	181664080	4282	12433											
RFTN1	23180	broad.mit.edu	37	chr3	16358381	16358381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgacttcctcagcatccCcgtccctggcatcctctcca	5	20	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16358381	A	A	16358381	3	1	9	1	0	0	0	0	1	0	0	0	13366	623	22	2	49	2	RFTN1	3	16358381	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	16358381	181664049	4283	12434											
RFTN1	23180	broad.mit.edu	37	chr3	16399416	16399416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtctaaacaaaagaagcGgggctgccaaccccacactt	9	13	1	1	rs115463599	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16399416	T	T	16399416	1	4	9	0	1	0	0	0	0	0	0	0	13366	1131	39	1		1	RFTN1	3	16399416	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41035	16399416	181623014	4284	12435											
RFTN1	23180	broad.mit.edu	37	chr3	16475415	16475415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccaggggcgtcttctccCgctcatgggtgggctgcacg	15	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16475415	A	A	16475415	3	1	9	1	0	0	0	0	1	0	0	0	13366	652	23	1	1493	1	RFTN1	3	16475415	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75999	16475415	181547015	4285	12436											
RFTN1	23180	broad.mit.edu	37	chr3	16535333	16535333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaataaatattcccaggcCgtttttcatcacgtttctct	5	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16535333	A	A	16535333	3	1	9	1	0	0	0	0	1	0	0	0	13366	652	23	1	1728	1	RFTN1	3	16535333	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59918	16535333	181487097	4286	12437											
DAZL	1618	broad.mit.edu	37	chr3	16633629	16633629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacagacaagataccacCgtttgtatgcttcggtccac	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16633629	A	A	16633629	2	1	9	1	0	0	0	0	0	0	0	1	4279	639	23	1		1	DAZL	3	16633629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	98296	16633629	181388801	4287	12438											
PLCL2	23228	broad.mit.edu	37	chr3	17053407	17053407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtttacagacgggctacCgccatgtccccctgcagtcc	9	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17053407	A	A	17053407	3	1	9	1	0	0	0	0	1	0	0	0	12135	652	23	1	2569	1	PLCL2	3	17053407	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	419778	17053407	180969023	4288	12439											
PLCL2	23228	broad.mit.edu	37	chr3	17056329	17056329	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagtggtcctaaatctcagcGagcagtaccccacaatggag	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17056329	T	T	17056329	4	4	9	1	0	0	0	0	0	1	0	0	12135	1059	37	3	2948	3	PLCL2	3	17056329	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2922	17056329	180966101	4289	12440											
PLCL2	23228	broad.mit.edu	37	chr3	17077378	17077378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcacccaaatatgctcCtctgtatgtttgttaacagt	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17077378	A	A	17077378	1	1	9	0	1	0	0	0	0	0	0	0	12135	696	24	2		2	PLCL2	3	17077378	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21049	17077378	180945052	4290	12441											
PLCL2	23228	broad.mit.edu	37	chr3	17131285	17131285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaacctgaaacaaatcCattttgctgctgtttcatgt	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17131285	A	A	17131285	3	1	9	1	0	0	0	0	1	0	0	0	12135	594	21	2	3281	2	PLCL2	3	17131285	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53907	17131285	180891145	4291	12442											
TBC1D5	9779	broad.mit.edu	37	chr3	17446247	17446247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggccaacaaccttcctcGggttggtaatatgctagtaa	10	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17446247	T	T	17446247	3	4	9	1	0	0	0	0	1	0	0	0	15745	1116	39	1	2141	1	TBC1D5	3	17446247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	314962	17446247	180576183	4292	12443											
SATB1	6304	broad.mit.edu	37	chr3	18390864	18390864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggtgcttgagatagtacCgctggttctgaaagaacttg	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18390864	A	A	18390864	3	1	9	1	0	0	0	0	1	0	0	0	13965	652	23	1	205	1	SATB1	3	18390864	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	944617	18390864	179631566	4293	12444											
KCNH8	131096	broad.mit.edu	37	chr3	19295238	19295238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagcttgctggatttgccCgaactgaagtcatgcagaag	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19295238	A	A	19295238	2	1	9	1	0	0	0	0	0	0	0	1	8108	644	23	1		1	KCNH8	3	19295238	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	904374	19295238	178727192	4294	12445											
KCNH8	131096	broad.mit.edu	37	chr3	19432148	19432148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgagtaaagagctcccCgccacatggcctttaaggtt	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19432148	A	A	19432148	1	1	9	0	1	0	0	0	0	0	0	0	8108	667	23	1		1	KCNH8	3	19432148	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	136910	19432148	178590282	4295	12446											
KCNH8	131096	broad.mit.edu	37	chr3	19492741	19492741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttttgaatgtgccagccGgggctgcctcaggtctctgt	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19492741	T	T	19492741	3	4	9	1	0	0	0	0	1	0	0	0	8108	1116	39	1	1708	1	KCNH8	3	19492741	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60593	19492741	178529689	4296	12447											
EFHB	151651	broad.mit.edu	37	chr3	19959805	19959805	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgatcgtgagattttcCtaatggtgctcgtcgattgc	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19959805	A	A	19959805	4	1	9	1	0	0	0	0	0	1	0	0	4985	690	24	2	1445	2	EFHB	3	19959805	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	467064	19959805	178062625	4297	12448											
EFHB	151651	broad.mit.edu	37	chr3	19959816	19959816	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagattttcctaatggtgctCgtcgattgctaagatatata	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19959816	A	A	19959816	3	1	9	1	0	0	0	0	1	0	0	0	4985	884	31	3	1456	3	EFHB	3	19959816	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	19959816	178062614	4298	12449											
EFHB	151651	broad.mit.edu	37	chr3	19975295	19975295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattctgtctttctaatccCatttcaagccccttgctcaa	3	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19975295	A	A	19975295	3	1	9	1	0	0	0	0	1	0	0	0	4985	594	21	2	2337	2	EFHB	3	19975295	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15479	19975295	178047135	4299	12450											
KAT2B	8850	broad.mit.edu	37	chr3	20113931	20113931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctaacagaatcctgtcGgagttgtagccatgccctag	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20113931	T	T	20113931	3	4	9	1	0	0	0	0	1	0	0	0	8052	1116	39	1	416	1	KAT2B	3	20113931	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138636	20113931	177908499	4300	12451											
KAT2B	8850	broad.mit.edu	37	chr3	20181816	20181816	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctaaatccacggatccCgtacacagaattttctgtca	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20181816	A	A	20181816	3	1	9	1	0	0	0	0	1	0	0	0	8052	652	23	1	2014	1	KAT2B	3	20181816	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67885	20181816	177840614	4301	12452											
SGOL1	151648	broad.mit.edu	37	chr3	20202589	20202589	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctaaggatgtgaagccCgtggactttacctcaagcag	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20202589	A	A	20202589	1	1	9	0	1	0	0	0	0	0	0	0	14329	667	23	1		1	SGOL1	3	20202589	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	20773	20202589	177819841	4302	12453											
ZNF385D	79750	broad.mit.edu	37	chr3	21478693	21478693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtgtccctgcagtacCgtctgtattcaaaataacac	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21478693	A	A	21478693	3	1	9	1	0	0	0	0	1	0	0	0	18004	652	23	1	761	1	ZNF385D	3	21478693	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1276104	21478693	176543737	4303	12454											
ZNF385D	79750	broad.mit.edu	37	chr3	21606137	21606137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtggggaagaggaacccCgaatgtatggtttattacag	14	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21606137	A	A	21606137	3	1	9	1	0	0	0	0	1	0	0	0	18004	652	23	1	1006	1	ZNF385D	3	21606137	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127444	21606137	176416293	4304	12455											
NR1D2	9975	broad.mit.edu	37	chr3	23997541	23997541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctagaatttagtggcatGgttctactgtgtaaagtctg	11	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23997541	T	T	23997541	3	4	9	1	0	0	0	0	1	0	0	0	10711	1348	47	2	307	2	NR1D2	3	23997541	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2391404	23997541	174024889	4305	12456											
NR1D2	9975	broad.mit.edu	37	chr3	23997563	23997563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctactgtgtaaagtctgtGgggatgtggcgtcaggattc	14	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23997563	T	T	23997563	3	4	9	1	0	0	0	0	1	0	0	0	10711	1348	47	2	329	2	NR1D2	3	23997563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	23997563	174024867	4306	12457											
NR1D2	9975	broad.mit.edu	37	chr3	24006382	24006382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggttaaattcatgttGgggtttctgataattgagat	13	2	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24006382	T	T	24006382	1	4	9	0	1	0	0	0	0	0	0	0	10711	1363	47	2		2	NR1D2	3	24006382	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8819	24006382	174016048	4307	12458											
THRB	7068	broad.mit.edu	37	chr3	24164575	24164575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcaggaaactatcttGgtacttttctattctctcaa	7	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24164575	T	T	24164575	3	4	9	1	0	0	0	0	1	0	0	0	15998	1357	47	2	203	2	THRB	3	24164575	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	158193	24164575	173857855	4308	12459											
THRB	7068	broad.mit.edu	37	chr3	24185045	24185045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcgttggtcgccacatGggcttcggtgacagttttga	15	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24185045	T	T	24185045	3	4	9	1	0	0	0	0	1	0	0	0	15998	1348	47	2	716	2	THRB	3	24185045	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20470	24185045	173837385	4309	12460											
THRB	7068	broad.mit.edu	37	chr3	24188314	24188314	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttcttctaaagaaaccCtatatgaaaaacaaagaccc	5	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24188314	A	A	24188314	5	1	9	1	0	0	0	0	0	0	1	0	15998	695	24	2	1021	2	THRB	3	24188314	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	3269	24188314	173834116	4310	12461											
RARB	5915	broad.mit.edu	37	chr3	25638005	25638005	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattctgaaggacatgaaccCttgaccccaagttcaagtgg	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25638005	A	A	25638005	2	1	9	1	0	0	0	0	0	0	0	1	13161	668	24	2		2	RARB	3	25638005	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1449691	25638005	172384425	4311	12462											
TOP2B	7155	broad.mit.edu	37	chr3	25654181	25654181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccagccagaacatcttctCgttcttgagattccactttc	5	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25654181	A	A	25654181	3	1	9	1	0	0	0	0	1	0	0	0	16490	884	31	3	1305	3	TOP2B	3	25654181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16176	25654181	172368249	4312	12463											
NGLY1	55768	broad.mit.edu	37	chr3	25773830	25773830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagacccatttcacctcGggctactctccaagccactg	7	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25773830	T	T	25773830	2	4	9	1	0	0	0	0	0	0	0	1	10493	1124	39	1		1	NGLY1	3	25773830	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	119649	25773830	172248600	4313	12464											
OXSM	54995	broad.mit.edu	37	chr3	25833265	25833265	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgggttttccagagccCgggctctgagcacaaactca	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25833265	G	G	25833265	3	3	9	1	0	0	0	0	1	0	0	0	11429	643	23	4	756	4	OXSM	3	25833265	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59435	25833265	172189165	4314	12465											
NEK10	152110	broad.mit.edu	37	chr3	27387754	27387754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggatcacaattcagcacGggataaagaaagtaacaaaa	9	6	2	2	rs140290083	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27387754	T	T	27387754	1	4	9	0	1	0	0	0	0	0	0	0	10417	1131	39	1		1	NEK10	3	27387754	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1554489	27387754	170634676	4315	12466											
SLC4A7	9497	broad.mit.edu	37	chr3	27427526	27427526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagaacctttaaaaagtGgggaaggaaatattaagtaa	10	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27427526	T	T	27427526	1	4	9	0	1	0	0	0	0	0	0	0	14772	1363	47	2		2	SLC4A7	3	27427526	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39772	27427526	170594904	4316	12467											
SLC4A7	9497	broad.mit.edu	37	chr3	27463238	27463238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttggatgcctcagcaccCgtaggaatttttctcatgaa	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27463238	A	A	27463238	2	1	9	1	0	0	0	0	0	0	0	1	14772	639	23	1		1	SLC4A7	3	27463238	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35712	27463238	170559192	4317	12468											
EOMES	8320	broad.mit.edu	37	chr3	27761003	27761003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaacaaaacacaaaaccCaagcatatagggctgtttac	6	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27761003	A	A	27761003	1	1	9	0	1	0	0	0	0	0	0	0	5189	609	21	2		2	EOMES	3	27761003	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	297765	27761003	170261427	4318	12469											
EOMES	8320	broad.mit.edu	37	chr3	27761606	27761606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgagttgtgtgagtcgaGggttacgatttcttcccgcc	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27761606	T	T	27761606	1	4	9	0	1	0	0	0	0	0	0	0	5189	1015	35	2		2	EOMES	3	27761606	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	603	27761606	170260824	4319	12470											
GADL1	339896	broad.mit.edu	37	chr3	30875403	30875403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccatcagcatcttgtgtGggttccaggccacagagtca	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30875403	T	T	30875403	3	4	9	1	0	0	0	0	1	0	0	0	6245	1348	47	2	593	2	GADL1	3	30875403	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3113797	30875403	167147027	4320	12471											
GADL1	339896	broad.mit.edu	37	chr3	30875734	30875734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgccatgcagaagcttgcGgtgcttcctcgacatcaaag	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30875734	T	T	30875734	3	4	9	1	0	0	0	0	1	0	0	0	6245	1116	39	1	646	1	GADL1	3	30875734	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	331	30875734	167146696	4321	12472											
OSBPL10	114884	broad.mit.edu	37	chr3	31774883	31774883	+	Missense_Mutation	SNP	C	A	A													tgtggaatgtgacttggaccCgtgccatcccaggatgtttt					rs143778028		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31774883	A	A	31774883	3	1	9	1	0	0	0	0	1	0	0	0	11369	652	23	1	1361	1	OSBPL10	3	31774883	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	899149	31774883	166247547	4322	12473	74	2									
OSBPL10	114884	broad.mit.edu	37	chr3	31774893	31774893	+	Silent	SNP	C	A	A													gacttggacccgtgccatccCaggatgttttctgaaataaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31774893	A	A	31774893	2	1	9	1	0	0	0	0	0	0	0	1	11369	581	21	2		2	OSBPL10	3	31774893	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	31774893	166247537	4323	12474	74	2									
OSBPL10	114884	broad.mit.edu	37	chr3	31836402	31836402	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcacattggagagaaactCgagagaaggggtgccagaga	15	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31836402	A	A	31836402	1	1	9	0	1	0	0	0	0	0	0	0	11369	899	31	3		3	OSBPL10	3	31836402	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	61509	31836402	166186028	4324	12475											
GPD1L	23171	broad.mit.edu	37	chr3	32180054	32180054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatataagaggagaaacGgtcttctctgccttttggtt	10	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32180054	T	T	32180054	1	4	9	0	1	0	0	0	0	0	0	0	6670	1131	39	1		1	GPD1L	3	32180054	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	343652	32180054	165842376	4325	12476											
GPD1L	23171	broad.mit.edu	37	chr3	32180142	32180142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtgtttgtcattcccCaccagttcattcacagaatc	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32180142	A	A	32180142	3	1	9	1	0	0	0	0	1	0	0	0	6670	594	21	2	299	2	GPD1L	3	32180142	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	32180142	165842288	4326	12477											
GPD1L	23171	broad.mit.edu	37	chr3	32181649	32181649	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaagttgtgtagccatGggacatctactatcccatgc	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32181649	T	T	32181649	1	4	9	0	1	0	0	0	0	0	0	0	6670	1363	47	2		2	GPD1L	3	32181649	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1507	32181649	165840781	4327	12478											
GPD1L	23171	broad.mit.edu	37	chr3	32181803	32181803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgacatcagtgtgctgatGggagccaacattgccaatga	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32181803	T	T	32181803	3	4	9	1	0	0	0	0	1	0	0	0	6670	1348	47	2	464	2	GPD1L	3	32181803	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	154	32181803	165840627	4328	12479											
CNOT10	25904	broad.mit.edu	37	chr3	32801043	32801043	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataaacttcttcagcagccCaagctgtcaggatctcttaa	7	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32801043	A	A	32801043	2	1	9	1	0	0	0	0	0	0	0	1	3650	581	21	2		2	CNOT10	3	32801043	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	619240	32801043	165221387	4329	12480											
CNOT10	25904	broad.mit.edu	37	chr3	32806183	32806183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttccccagctggtaagcGggcccctcagtgctacccca	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32806183	T	T	32806183	3	4	9	1	0	0	0	0	1	0	0	0	3650	1116	39	1	1952	1	CNOT10	3	32806183	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5140	32806183	165216247	4330	12481											
CNOT10	25904	broad.mit.edu	37	chr3	32811354	32811354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagcttttgttttttcacGggcatctttctgttttgagc	8	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32811354	T	T	32811354	1	4	9	0	1	0	0	0	0	0	0	0	3650	1131	39	1		1	CNOT10	3	32811354	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5171	32811354	165211076	4331	12482											
TRIM71	131405	broad.mit.edu	37	chr3	32915266	32915266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcttccctcctcctccCgtcctgcatctccatttatg	5	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32915266	A	A	32915266	1	1	9	0	1	0	0	0	0	0	0	0	16669	667	23	1		1	TRIM71	3	32915266	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103912	32915266	165107164	4332	12483											
TRIM71	131405	broad.mit.edu	37	chr3	32933146	32933146	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggattccaggaaccatcGggtacagatgtttgaatcca	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32933146	T	T	32933146	3	4	9	1	0	0	0	0	1	0	0	0	16669	1116	39	1	2464	1	TRIM71	3	32933146	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17880	32933146	165089284	4333	12484											
FBXL2	25827	broad.mit.edu	37	chr3	33406121	33406121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actttcttgattaaagggtcGagtggtggaaaatatctcga	11	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33406121	T	T	33406121	3	4	9	1	0	0	0	0	1	0	0	0	5773	1058	37	3	218	3	FBXL2	3	33406121	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	472975	33406121	164616309	4334	12485											
FBXL2	25827	broad.mit.edu	37	chr3	33414690	33414690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtgaccaaatagccacGgggagagagaagggagagaa	16	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33414690	T	T	33414690	1	4	9	0	1	0	0	0	0	0	0	0	5773	1131	39	1		1	FBXL2	3	33414690	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8569	33414690	164607740	4335	12486											
UBP1	7342	broad.mit.edu	37	chr3	33450736	33450736	+	Missense_Mutation	SNP	G	T	T													ttactacattacctctgtgaGgattgtggtatcataggacg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33450736	T	T	33450736	3	4	9	1	0	0	0	0	1	0	0	0	17021	1000	35	2	851	2	UBP1	3	33450736	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36046	33450736	164571694	4336	12487	75	2									
UBP1	7342	broad.mit.edu	37	chr3	33450743	33450743	+	Silent	SNP	G	T	T													attacctctgtgaggattgtGgtatcataggacggctgata							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33450743	T	T	33450743	2	4	9	1	0	0	0	0	0	0	0	1	17021	1335	47	2		2	UBP1	3	33450743	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	33450743	164571687	4337	12488	75	2									
UBP1	7342	broad.mit.edu	37	chr3	33454252	33454252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgggcgattccacttcCatccttcaagttgctgatgc	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33454252	A	A	33454252	3	1	9	1	0	0	0	0	1	0	0	0	17021	595	21	2	1264	2	UBP1	3	33454252	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3509	33454252	164568178	4338	12489											
CLASP2	23122	broad.mit.edu	37	chr3	33558531	33558531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttgaagtgttcatccCaaacactaaaagattcttcc	5	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33558531	A	A	33558531	3	1	9	1	0	0	0	0	1	0	0	0	3486	595	21	2	617	2	CLASP2	3	33558531	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104279	33558531	164463899	4339	12490											
CLASP2	23122	broad.mit.edu	37	chr3	33592790	33592790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgtccaagtgatgaccCgagacactgctaggcgagtt	12	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33592790	A	A	33592790	3	1	9	1	0	0	0	0	1	0	0	0	3486	652	23	1	1453	1	CLASP2	3	33592790	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34259	33592790	164429640	4340	12491											
CLASP2	23122	broad.mit.edu	37	chr3	33614670	33614670	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcctttctgaccaattGgaactagcacatctattgag	6	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33614670	T	T	33614670	2	4	9	1	0	0	0	0	0	0	0	1	3486	1335	47	2		2	CLASP2	3	33614670	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21880	33614670	164407760	4341	12492											
CLASP2	23122	broad.mit.edu	37	chr3	33614709	33614709	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacttctgccacatcttcCgtctgcctcatatatgtagg	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33614709	A	A	33614709	2	1	9	1	0	0	0	0	0	0	0	1	3486	639	23	1		1	CLASP2	3	33614709	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	33614709	164407721	4342	12493											
CLASP2	23122	broad.mit.edu	37	chr3	33614738	33614738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatatgtaggaatactacCatttcgagaactataggagc	8	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33614738	A	A	33614738	3	1	9	1	0	0	0	0	1	0	0	0	3486	594	21	2	2013	2	CLASP2	3	33614738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	33614738	164407692	4343	12494											
ARPP21	10777	broad.mit.edu	37	chr3	35729353	35729353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataaaacctctgaaaaaccCaagatcagaatgttatcaaa	5	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35729353	A	A	35729353	2	1	9	1	0	0	0	0	0	0	0	1	982	581	21	2		2	ARPP21	3	35729353	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2114615	35729353	162293077	4344	12495											
ARPP21	10777	broad.mit.edu	37	chr3	35833902	35833902	+	Missense_Mutation	SNP	G	T	T													ccagtcttgtctggtcaacaGggattccaaggcctaatagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35833902	T	T	35833902	3	4	9	1	0	0	0	0	1	0	0	0	982	991	35	2	2140	2	ARPP21	3	35833902	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	104549	35833902	162188528	4345	12496	76	2									
ARPP21	10777	broad.mit.edu	37	chr3	35833909	35833909	+	Missense_Mutation	SNP	C	A	A													tgtctggtcaacagggattcCaaggcctaataggagtgcag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35833909	A	A	35833909	3	1	9	1	0	0	0	0	1	0	0	0	982	595	21	2	2147	2	ARPP21	3	35833909	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	35833909	162188521	4346	12497	76	2									
TRANK1	9881	broad.mit.edu	37	chr3	36873250	36873250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaccttcaggagcctctcGggaacctggccagggcagtc	12	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36873250	T	T	36873250	2	4	9	1	0	0	0	0	0	0	0	1	16578	1103	39	1		1	TRANK1	3	36873250	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1039341	36873250	161149180	4347	12498											
TRANK1	9881	broad.mit.edu	37	chr3	36873608	36873608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctaaacaggaactccCagtagtgcaagagtgcaatg	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36873608	A	A	36873608	3	1	9	1	0	0	0	0	1	0	0	0	16578	595	21	2	1455	2	TRANK1	3	36873608	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	358	36873608	161148822	4348	12499											
TRANK1	9881	broad.mit.edu	37	chr3	36896824	36896824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctctgggccgtgtccccCgtgaggaacatagagttggg	15	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36896824	A	A	36896824	2	1	9	1	0	0	0	0	0	0	0	1	16578	639	23	1		1	TRANK1	3	36896824	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23216	36896824	161125606	4349	12500											
TRANK1	9881	broad.mit.edu	37	chr3	36897277	36897277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccgggggtcactgtcaccCgtacgcatttctacagcttt	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36897277	A	A	36897277	2	1	9	1	0	0	0	0	0	0	0	1	16578	639	23	1		1	TRANK1	3	36897277	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	453	36897277	161125153	4350	12501											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37032815	37032815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttcagttgtggcaaccCgaaacagggcttggagatgc	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37032815	A	A	37032815	3	1	9	1	0	0	0	0	1	0	0	0	5226	652	23	1	73	1	EPM2AIP1	3	37032815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	135538	37032815	160989615	4351	12502											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37033458	37033458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgtttgtctgagaagtGgactgttgttgcccctactg	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37033458	T	T	37033458	3	4	9	1	0	0	0	0	1	0	0	0	5226	1348	47	2	716	2	EPM2AIP1	3	37033458	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	643	37033458	160988972	4352	12503											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37033473	37033473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtggactgttgttgcccCtactgaaaccaagaacgctt	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37033473	A	A	37033473	3	1	9	1	0	0	0	0	1	0	0	0	5226	681	24	2	731	2	EPM2AIP1	3	37033473	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	37033473	160988957	4353	12504											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37033600	37033600	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgctctgattcagattcCgttagtaaagtctgaaattc	7	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37033600	A	A	37033600	2	1	9	1	0	0	0	0	0	0	0	1	5226	639	23	1		1	EPM2AIP1	3	37033600	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	127	37033600	160988830	4354	12505											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37033866	37033866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctctgcaagctaagccCtgctgtctgcagggactcta	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37033866	A	A	37033866	3	1	9	1	0	0	0	0	1	0	0	0	5226	681	24	2	1124	2	EPM2AIP1	3	37033866	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	266	37033866	160988564	4355	12506											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37034166	37034166	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgcaggacgcttacatgctCgggcagtacctctctcagca	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37034166	A	A	37034166	4	1	9	1	0	0	0	0	0	1	0	0	5226	893	31	3	1424	3	EPM2AIP1	3	37034166	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	300	37034166	160988264	4356	12507											
MLH1	4292	broad.mit.edu	37	chr3	37067230	37067230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtgataaggtctatgccCaccagatggttcgtacagat	11	8	1	3	rs63750557		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37067230	A	A	37067230	3	1	9	1	0	0	0	0	1	0	0	0	9710	594	21	2	1187	2	MLH1	3	37067230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33064	37067230	160955200	4357	12508											
MLH1	4292	broad.mit.edu	37	chr3	37070324	37070324	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggtggaagatgattccCgaaaggaaatgactgcagct	12	6	0	3	rs63749795		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37070324	A	A	37070324	2	1	9	1	0	0	0	0	0	0	0	1	9710	644	23	1		1	MLH1	3	37070324	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3094	37070324	160952106	4358	12509											
GOLGA4	2803	broad.mit.edu	37	chr3	37337612	37337612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacgattacgaaatggccCgatgaatgttgatgtactga	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37337612	A	A	37337612	3	1	9	1	0	0	0	0	1	0	0	0	6619	652	23	1	812	1	GOLGA4	3	37337612	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	267288	37337612	160684818	4359	12510											
GOLGA4	2803	broad.mit.edu	37	chr3	37367143	37367143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttctcattgtcagcacCgtacaactaaagttaaggag	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37367143	A	A	37367143	3	1	9	1	0	0	0	0	1	0	0	0	6619	652	23	1	3890	1	GOLGA4	3	37367143	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29531	37367143	160655287	4360	12511											
GOLGA4	2803	broad.mit.edu	37	chr3	37368006	37368006	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactattgaaatagagtcCttaaatgaagttcttaaaaa	5	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37368006	A	A	37368006	2	1	9	1	0	0	0	0	0	0	0	1	6619	668	24	2		2	GOLGA4	3	37368006	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	863	37368006	160654424	4361	12512											
GOLGA4	2803	broad.mit.edu	37	chr3	37368556	37368556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagaagaagcagattccCaaggctgtgtgcagaagaca	11	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37368556	A	A	37368556	3	1	9	1	0	0	0	0	1	0	0	0	6619	595	21	2	5303	2	GOLGA4	3	37368556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	550	37368556	160653874	4362	12513											
GOLGA4	2803	broad.mit.edu	37	chr3	37396629	37396629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaccgtactgaagttccCtgatgatcagactcagaaaa	7	11	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37396629	A	A	37396629	3	1	9	1	0	0	0	0	1	0	0	0	6619	681	24	2	6770	2	GOLGA4	3	37396629	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28073	37396629	160625801	4363	12514											
ITGA9	3680	broad.mit.edu	37	chr3	37523052	37523052	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttctgctacatcatcccCtccaacctccaggccaaagg	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37523052	A	A	37523052	2	1	9	1	0	0	0	0	0	0	0	1	7953	668	24	2		2	ITGA9	3	37523052	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	126423	37523052	160499378	4364	12515											
ITGA9	3680	broad.mit.edu	37	chr3	37523152	37523152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacctcatgccctaagccCgccttcccacctctatgcac	4	22	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37523152	A	A	37523152	1	1	9	0	1	0	0	0	0	0	0	0	7953	667	23	1		1	ITGA9	3	37523152	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	100	37523152	160499278	4365	12516											
ITGA9	3680	broad.mit.edu	37	chr3	37544598	37544598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctttgttgtgactgtGgttctcattgcattcccctc	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37544598	T	T	37544598	1	4	9	0	1	0	0	0	0	0	0	0	7953	1363	47	2		2	ITGA9	3	37544598	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21446	37544598	160477832	4366	12517											
ITGA9	3680	broad.mit.edu	37	chr3	37626998	37626998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttttacttttcttctttGggatttcttagcatgcccgt	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37626998	T	T	37626998	1	4	9	0	1	0	0	0	0	0	0	0	7953	1363	47	2		2	ITGA9	3	37626998	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	82400	37626998	160395432	4367	12518			13	16		4	4	90	N	G_C	2.144392e-05
ITGA9	3680	broad.mit.edu	37	chr3	37627020	37627020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttcttagcatgcccgttGggacaattagggagggattc	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37627020	T	T	37627020	1	4	9	0	1	0	0	0	0	0	0	0	7953	1363	47	2		2	ITGA9	3	37627020	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	37627020	160395410	4368	12519			13	16		4	4	90	N	G_C	2.144392e-05
ITGA9	3680	broad.mit.edu	37	chr3	37627072	37627072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattttctctagcaattatGggggttttatctcccagatg	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37627072	T	T	37627072	1	4	9	0	1	0	0	0	0	0	0	0	7953	1363	47	2		2	ITGA9	3	37627072	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	37627072	160395358	4369	12520			13	16		4	4	90	N	G_C	2.144392e-05
ITGA9	3680	broad.mit.edu	37	chr3	37627087	37627087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatgggggttttatctccCagatgtgatttatgccatat	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37627087	A	A	37627087	1	1	9	0	1	0	0	0	0	0	0	0	7953	609	21	2		2	ITGA9	3	37627087	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	37627087	160395343	4370	12521			13	16		4	4	90	N	G_C	2.144392e-05
ITGA9	3680	broad.mit.edu	37	chr3	37792071	37792071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatggtggtgagttctcCatttgttttcactattgctt	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37792071	A	A	37792071	1	1	9	0	1	0	0	0	0	0	0	0	7953	609	21	2		2	ITGA9	3	37792071	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	164984	37792071	160230359	4371	12522											
ITGA9	3680	broad.mit.edu	37	chr3	37818885	37818885	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcttttcatttgcaggtGggccaagagaagggaaactg	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37818885	T	T	37818885	2	4	9	1	0	0	0	0	0	0	0	1	7953	1335	47	2		2	ITGA9	3	37818885	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26814	37818885	160203545	4372	12523											
ITGA9	3680	broad.mit.edu	37	chr3	37826498	37826498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcatccagttcatgtccCgcgccaaggtgaaggtggat	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37826498	A	A	37826498	3	1	9	1	0	0	0	0	1	0	0	0	7953	652	23	1	2920	1	ITGA9	3	37826498	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7613	37826498	160195932	4373	12524											
VILL	50853	broad.mit.edu	37	chr3	38048477	38048477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatatctttgggaaatcCaaggaggaattctacagcat	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38048477	A	A	38048477	2	1	9	1	0	0	0	0	0	0	0	1	17292	581	21	2		2	VILL	3	38048477	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	221979	38048477	159973953	4374	12525											
PLCD1	5333	broad.mit.edu	37	chr3	38052736	38052736	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcgtagcgctcaatgagGgagagggccagcgcaggccc	17	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38052736	T	T	38052736	2	4	9	1	0	0	0	0	0	0	0	1	12126	1219	43	2		2	PLCD1	3	38052736	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4259	38052736	159969694	4375	12526											
DLEC1	9940	broad.mit.edu	37	chr3	38101312	38101312	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccagaagattactacacCgatacagtgccgtttcactc	6	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38101312	A	A	38101312	2	1	9	1	0	0	0	0	0	0	0	1	4592	639	23	1		1	DLEC1	3	38101312	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48576	38101312	159921118	4376	12527											
ACAA1	30	broad.mit.edu	37	chr3	38175462	38175462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagaaactgggcgattcGggccatgattgccccggccc	12	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38175462	T	T	38175462	2	4	9	1	0	0	0	0	0	0	0	1	104	1124	39	1		1	ACAA1	3	38175462	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	74150	38175462	159846968	4377	12528											
MYD88	4615	broad.mit.edu	37	chr3	38182748	38182748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaaatcttggttctggactCgccttgccaaggccttgtcc	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38182748	A	A	38182748	3	1	9	1	0	0	0	0	1	0	0	0	10117	884	31	3	943	3	MYD88	3	38182748	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7286	38182748	159839682	4378	12529											
OXSR1	9943	broad.mit.edu	37	chr3	38263183	38263183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagttatggaacaggtacCgtgtctttttttctgtttta	9	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38263183	A	A	38263183	1	1	9	0	1	0	0	0	0	0	0	0	11430	667	23	1		1	OXSR1	3	38263183	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80435	38263183	159759247	4379	12530											
SLC22A14	9389	broad.mit.edu	37	chr3	38347881	38347881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgaatctgaccatacccCaagcacccaatggcagtttc	7	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38347881	A	A	38347881	3	1	9	1	0	0	0	0	1	0	0	0	14558	595	21	2	366	2	SLC22A14	3	38347881	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84698	38347881	159674549	4380	12531											
XYLB	9942	broad.mit.edu	37	chr3	38401861	38401861	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcatgtgcacaaggatGggctgacggtcacttctcca	12	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38401861	T	T	38401861	3	4	9	1	0	0	0	0	1	0	0	0	17589	1348	47	2	182	2	XYLB	3	38401861	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53980	38401861	159620569	4381	12532											
ACVR2B	93	broad.mit.edu	37	chr3	38519456	38519456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgccagaggctgggggccCggaaggtaagggggcagtgt	20	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38519456	A	A	38519456	3	1	9	1	0	0	0	0	1	0	0	0	224	652	23	1	375	1	ACVR2B	3	38519456	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117595	38519456	159502974	4382	12533											
ACVR2B	93	broad.mit.edu	37	chr3	38521287	38521287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtgccctggtgccgtgGcgagggccacaagccgtcta	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38521287	T	T	38521287	3	4	9	1	0	0	0	0	1	0	0	0	224	1203	42	3	955	3	ACVR2B	3	38521287	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1831	38521287	159501143	4383	12534											
SCN10A	6336	broad.mit.edu	37	chr3	38739880	38739880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaggaatagcaacagccCgatgttgaagagggcaggca	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38739880	A	A	38739880	3	1	9	1	0	0	0	0	1	0	0	0	14025	652	23	1	1043	1	SCN10A	3	38739880	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	218593	38739880	159282550	4384	12535											
SCN10A	6336	broad.mit.edu	37	chr3	38739976	38739976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaggatgcggccaattcGggccaggcggatgactctga	15	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38739976	T	T	38739976	2	4	9	1	0	0	0	0	0	0	0	1	14025	1124	39	1		1	SCN10A	3	38739976	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96	38739976	159282454	4385	12536											
SCN10A	6336	broad.mit.edu	37	chr3	38768565	38768565	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaagagaaggaatggaaggGaagattgatcaatctctaag	13	3	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38768565	A	A	38768565	1	1	9	0	1	0	0	0	0	0	0	0	14025	1189	41	4		4	SCN10A	3	38768565	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28589	38768565	159253865	4386	12537											
SCN10A	6336	broad.mit.edu	37	chr3	38770233	38770233	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatattttttcggttgttacGgtagttttcccctaggagct	10	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38770233	T	T	38770233	3	4	9	1	0	0	0	0	1	0	0	0	14025	1116	39	1	3482	1	SCN10A	3	38770233	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1668	38770233	159252197	4387	12538											
SCN10A	6336	broad.mit.edu	37	chr3	38797308	38797308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttgtaaggatcagagcGgggtgatttgttgtcttctg	15	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38797308	T	T	38797308	3	4	9	1	0	0	0	0	1	0	0	0	14025	1116	39	1	4510	1	SCN10A	3	38797308	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27075	38797308	159225122	4388	12539											
SCN10A	6336	broad.mit.edu	37	chr3	38797434	38797434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagaggttgtgtcaatccCtagtgctgctagcacctgcg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38797434	A	A	38797434	3	1	9	1	0	0	0	0	1	0	0	0	14025	681	24	2	4636	2	SCN10A	3	38797434	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126	38797434	159224996	4389	12540											
SCN10A	6336	broad.mit.edu	37	chr3	38835233	38835233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctactagtagctcttaccCggtgtgtgctgtagaacgga	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835233	A	A	38835233	3	1	9	1	0	0	0	0	1	0	0	0	14025	666	23	1	5709	1	SCN10A	3	38835233	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37799	38835233	159187197	4390	12541											
SCN11A	11280	broad.mit.edu	37	chr3	38936362	38936362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcgatccagtgctaactGgactttagttttcctggcct	9	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38936362	T	T	38936362	3	4	9	1	0	0	0	0	1	0	0	0	14026	1357	47	2	2926	2	SCN11A	3	38936362	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101129	38936362	159086068	4391	12542											
SCN11A	11280	broad.mit.edu	37	chr3	38938526	38938526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagactgtcgggcctgtcGggttacagagttttggactc	14	8	0	2	rs140995438	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38938526	T	T	38938526	3	4	9	1	0	0	0	0	1	0	0	0	14026	1116	39	1	3214	1	SCN11A	3	38938526	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2164	38938526	159083904	4392	12543											
SCN11A	11280	broad.mit.edu	37	chr3	38988284	38988284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaatgaaaggatatgaatGgactgagactctaatggcta	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38988284	T	T	38988284	3	4	9	1	0	0	0	0	1	0	0	0	14026	1348	47	2	5093	2	SCN11A	3	38988284	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49758	38988284	159034146	4393	12544											
SCN11A	11280	broad.mit.edu	37	chr3	38991765	38991765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccttttggatggcaatcCgcttctcaattgcagccaga	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38991765	A	A	38991765	3	1	9	1	0	0	0	0	1	0	0	0	14026	652	23	1	5390	1	SCN11A	3	38991765	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3481	38991765	159030665	4394	12545											
WDR48	57599	broad.mit.edu	37	chr3	39119741	39119741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttattaaaggtaagaaaatGgaaggtactgtaccccttat	9	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39119741	T	T	39119741	1	4	9	0	1	0	0	0	0	0	0	0	17428	1363	47	2		2	WDR48	3	39119741	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	127976	39119741	158902689	4395	12546											
WDR48	57599	broad.mit.edu	37	chr3	39130741	39130741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctctgccgagattccGggggtgagactgagtctatg	16	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39130741	T	T	39130741	3	4	9	1	0	0	0	0	1	0	0	0	17428	1116	39	1	1662	1	WDR48	3	39130741	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11000	39130741	158891689	4396	12547											
WDR48	57599	broad.mit.edu	37	chr3	39130837	39130837	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctccactcccactttgctCttttatttttttgtaactca	2	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39130837	A	A	39130837	1	1	9	0	1	0	0	0	0	0	0	0	17428	928	32	3		3	WDR48	3	39130837	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96	39130837	158891593	4397	12548											
TTC21A	199223	broad.mit.edu	37	chr3	39167028	39167028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgccccaagcaggttaGgggaaggcctgtcttcatgg	13	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39167028	T	T	39167028	1	4	9	0	1	0	0	0	0	0	0	0	16813	1015	35	2		2	TTC21A	3	39167028	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36191	39167028	158855402	4398	12549											
TTC21A	199223	broad.mit.edu	37	chr3	39169874	39169874	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgcctggagctggacccCgcctccgtggatgcccatct	12	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39169874	A	A	39169874	2	1	9	1	0	0	0	0	0	0	0	1	16813	639	23	1		1	TTC21A	3	39169874	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2846	39169874	158852556	4399	12550											
TTC21A	199223	broad.mit.edu	37	chr3	39176551	39176551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcaagctgccactgttGggaaatctggagctttgtgt	12	9	1	0	rs148113219	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39176551	T	T	39176551	1	4	9	0	1	0	0	0	0	0	0	0	16813	1363	47	2		2	TTC21A	3	39176551	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6677	39176551	158845879	4400	12551											
TTC21A	199223	broad.mit.edu	37	chr3	39180219	39180219	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcctcagggagcacccCgactaccccaagatcaggga	11	15	2	1	rs2293313	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39180219	A	A	39180219	2	1	9	1	0	0	0	0	0	0	0	1	16813	639	23	1		1	TTC21A	3	39180219	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3668	39180219	158842211	4401	12552											
XIRP1	165904	broad.mit.edu	37	chr3	39226345	39226345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaacttccgtgctgaccCgtgtcagctccccaaaggcc	10	16	1	1	rs147693960		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39226345	A	A	39226345	3	1	9	1	0	0	0	0	1	0	0	0	17556	652	23	1	943	1	XIRP1	3	39226345	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46126	39226345	158796085	4402	12553											
CX3CR1	1524	broad.mit.edu	37	chr3	39306897	39306897	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcaggttcaggaactcCaggttctctgtagacacaag	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39306897	A	A	39306897	1	1	9	0	1	0	0	0	0	0	0	0	4108	609	21	2		2	CX3CR1	3	39306897	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	80552	39306897	158715533	4403	12554											
CX3CR1	1524	broad.mit.edu	37	chr3	39306923	39306923	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtagacacaaggctttGggattcccttcagagaagga	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39306923	T	T	39306923	1	4	9	0	1	0	0	0	0	0	0	0	4108	1363	47	2		2	CX3CR1	3	39306923	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	39306923	158715507	4404	12555											
CX3CR1	1524	broad.mit.edu	37	chr3	39306968	39306968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatctccatcactcgtgtGgtaagtaaaattgctgctca	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39306968	T	T	39306968	3	4	9	1	0	0	0	0	1	0	0	0	4108	1348	47	2	38	2	CX3CR1	3	39306968	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	39306968	158715462	4405	12556											
CX3CR1	1524	broad.mit.edu	37	chr3	39307461	39307461	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatttcctggaggacctcGgggtagtcaccaaggcattc	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39307461	T	T	39307461	2	4	9	1	0	0	0	0	0	0	0	1	4108	1103	39	1		1	CX3CR1	3	39307461	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	493	39307461	158714969	4406	12557											
CCR8	1237	broad.mit.edu	37	chr3	39373875	39373875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaccgactactactaccCtgatatcttctcaagcccct	5	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39373875	A	A	39373875	3	1	9	1	0	0	0	0	1	0	0	0	2977	681	24	2	55	2	CCR8	3	39373875	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66414	39373875	158648555	4407	12558											
CCR8	1237	broad.mit.edu	37	chr3	39374861	39374861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccagcagcactcctccCgttcctccagcgtagactac	7	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39374861	A	A	39374861	3	1	9	1	0	0	0	0	1	0	0	0	2977	652	23	1	1041	1	CCR8	3	39374861	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	986	39374861	158647569	4408	12559											
SLC25A38	54977	broad.mit.edu	37	chr3	39432849	39432850	+	Intron	DNP	GG	TT	TT													acttgcatgcgaatcatcttGgggtcttttgggaaaaccca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39432850	TT	TT	39432849	1	4	9	0	1	0	0	0	0	0	0	0	14616	1363	47	2		2	SLC25A38	3	39432849	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	57988	39432849	158589581	4409	12560											
SLC25A38	54977	broad.mit.edu	37	chr3	39437937	39437937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcatcccccgagccctcCgcagaactctaatggcagca	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39437937	A	A	39437937	3	1	9	1	0	0	0	0	1	0	0	0	14616	652	23	1	867	1	SLC25A38	3	39437937	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5088	39437937	158584493	4410	12561											
RPSA	3921	broad.mit.edu	37	chr3	39452661	39452661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacaagggtctctggccCaatgagtggagtttgatagt	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39452661	A	A	39452661	1	1	9	0	1	0	0	0	0	0	0	0	13774	609	21	2		2	RPSA	3	39452661	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14724	39452661	158569769	4411	12562											
MOBP	4336	broad.mit.edu	37	chr3	39554815	39554815	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taactgaacacagagaaagaGagagagtatacatcacctac	8	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39554815	T	T	39554815	1	4	9	0	1	0	0	0	0	0	0	0	9782	957	33	3		3	MOBP	3	39554815	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	102154	39554815	158467615	4412	12563											
MYRIP	25924	broad.mit.edu	37	chr3	40204204	40204204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatattcattctcttctccCacccctaccctgccaggagg	5	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40204204	A	A	40204204	1	1	9	0	1	0	0	0	0	0	0	0	10194	609	21	2		2	MYRIP	3	40204204	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	649389	40204204	157818226	4413	12564											
MYRIP	25924	broad.mit.edu	37	chr3	40208373	40208373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttggctgtggccctacGggtggctgaagaggccattg	15	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40208373	T	T	40208373	3	4	9	1	0	0	0	0	1	0	0	0	10194	1116	39	1	605	1	MYRIP	3	40208373	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4169	40208373	157814057	4414	12565											
MYRIP	25924	broad.mit.edu	37	chr3	40208591	40208591	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggactctcctggcaaagTgactgccaagtcaccccaaa	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40208591	A	A	40208591	1	1	9	0	1	0	0	0	0	0	0	0	10194	1711	59	5		5	MYRIP	3	40208591	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	218	40208591	157813839	4415	12566											
RPL14	9045	broad.mit.edu	37	chr3	40499409	40499409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcttcgtggaggttggccGggtggcctatgtctcctttg	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40499409	T	T	40499409	3	4	9	1	0	0	0	0	1	0	0	0	13672	1116	39	1	45	1	RPL14	3	40499409	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	290818	40499409	157523021	4416	12567											
ZNF621	285268	broad.mit.edu	37	chr3	40574363	40574363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctccagccatacctcctGttcttctccagggatcctgt	6	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40574363	T	T	40574363	3	4	9	1	0	0	0	0	1	0	0	0	18172	1377	48	3	1116	3	ZNF621	3	40574363	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74954	40574363	157448067	4417	12568											
CTNNB1	1499	broad.mit.edu	37	chr3	41268726	41268726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggctagtggtggacccCaagctttagtaaatataatg	10	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41268726	A	A	41268726	3	1	9	1	0	0	0	0	1	0	0	0	4050	595	21	2	986	2	CTNNB1	3	41268726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	694363	41268726	156753704	4418	12569											
CTNNB1	1499	broad.mit.edu	37	chr3	41275192	41275192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtgcgtactgtccttcGggctggtgacagggaagaca	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41275192	T	T	41275192	3	4	9	1	0	0	0	0	1	0	0	0	4050	1116	39	1	1388	1	CTNNB1	3	41275192	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6466	41275192	156747238	4419	12570											
CTNNB1	1499	broad.mit.edu	37	chr3	41279539	41279539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacttgatattggtgcccaGggagaaccccttggatatcg	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41279539	T	T	41279539	3	4	9	1	0	0	0	0	1	0	0	0	4050	991	35	2	2159	2	CTNNB1	3	41279539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4347	41279539	156742891	4420	12571											
ULK4	54986	broad.mit.edu	37	chr3	41705110	41705110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtaccttgtgaaagttGggttgtgttcagtcatcgcg	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41705110	T	T	41705110	3	4	9	1	0	0	0	0	1	0	0	0	17104	1348	47	2	800	2	ULK4	3	41705110	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	425571	41705110	156317320	4421	12572											
ULK4	54986	broad.mit.edu	37	chr3	41795959	41795959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggggctgtcaagtaaacGgataattgtggagacaaaac	13	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41795959	T	T	41795959	3	4	9	1	0	0	0	0	1	0	0	0	17104	1116	39	1	1676	1	ULK4	3	41795959	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90849	41795959	156226471	4422	12573											
ULK4	54986	broad.mit.edu	37	chr3	41841684	41841684	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaataggtaccacaaaatGggtcctatttctcctgtaat	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41841684	T	T	41841684	2	4	9	1	0	0	0	0	0	0	0	1	17104	1335	47	2		2	ULK4	3	41841684	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45725	41841684	156180746	4423	12574											
ULK4	54986	broad.mit.edu	37	chr3	41925442	41925442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacgtgagcaaccttggccCgtctgtaaatggagagaaaa	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41925442	A	A	41925442	3	1	9	1	0	0	0	0	1	0	0	0	17104	652	23	1	2331	1	ULK4	3	41925442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83758	41925442	156096988	4424	12575											
ULK4	54986	broad.mit.edu	37	chr3	41942235	41942235	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttggattgtcgataatGggggtgacaacaagatctga	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41942235	T	T	41942235	2	4	9	1	0	0	0	0	0	0	0	1	17104	1335	47	2		2	ULK4	3	41942235	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16793	41942235	156080195	4425	12576											
ULK4	54986	broad.mit.edu	37	chr3	41942259	41942259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaacaagatctgagtcCgtgtagataagctctctcat	9	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41942259	A	A	41942259	2	1	9	1	0	0	0	0	0	0	0	1	17104	639	23	1		1	ULK4	3	41942259	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	41942259	156080171	4426	12577											
ULK4	54986	broad.mit.edu	37	chr3	41961237	41961237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcataaagcagacagccCaaagaccagaggtcactgga	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41961237	A	A	41961237	3	1	9	1	0	0	0	0	1	0	0	0	17104	593	21	2	3340	2	ULK4	3	41961237	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18978	41961237	156061193	4427	12578											
ULK4	54986	broad.mit.edu	37	chr3	41973285	41973285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctaaacacaggacttGgatggtccacaactagagtt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41973285	T	T	41973285	1	4	9	0	1	0	0	0	0	0	0	0	17104	1363	47	2		2	ULK4	3	41973285	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12048	41973285	156049145	4428	12579											
ULK4	54986	broad.mit.edu	37	chr3	41996221	41996221	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtcttgcttcctcttcCgatctcctcatacagaataa	4	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41996221	A	A	41996221	4	1	9	1	0	0	0	0	0	1	0	0	17104	661	23	1	3940	1	ULK4	3	41996221	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22936	41996221	156026209	4429	12580											
TRAK1	22906	broad.mit.edu	37	chr3	42218228	42218228	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgcaggcacaacattagGggcacttttttagatgagtc	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42218228	T	T	42218228	1	4	9	0	1	0	0	0	0	0	0	0	16573	1247	43	2		2	TRAK1	3	42218228	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	222007	42218228	155804202	4430	12581											
TRAK1	22906	broad.mit.edu	37	chr3	42229480	42229481	+	Intron	DNP	GG	TC	TC													taagtgttggaatgtgagtcGggggggacagtatcaccttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	42229481	TC	TC	42229480	1	4	9	0	1	0	0	0	0	0	0	0	16573	1131	39	1		1	TRAK1	3	42229480	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	11252	42229480	155792950	4431	12582											
TRAK1	22906	broad.mit.edu	37	chr3	42251673	42251673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccggaggcagagttttGggccattctcacctctgttc	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42251673	T	T	42251673	1	4	9	0	1	0	0	0	0	0	0	0	16573	1357	47	2		2	TRAK1	3	42251673	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22193	42251673	155770757	4432	12583											
TRAK1	22906	broad.mit.edu	37	chr3	42260978	42260978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatatgttttgttcctccCaatttagcgcaccatcctgg	8	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42260978	A	A	42260978	1	1	9	0	1	0	0	0	0	0	0	0	16573	609	21	2		2	TRAK1	3	42260978	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9305	42260978	155761452	4433	12584											
TRAK1	22906	broad.mit.edu	37	chr3	42261076	42261076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcagatgagctcactcGggtcacaccaaggtaaggga	11	11	3	2	rs149186690	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42261076	T	T	42261076	3	4	9	1	0	0	0	0	1	0	0	0	16573	1116	39	1	2500	1	TRAK1	3	42261076	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98	42261076	155761354	4434	12585											
VIPR1	7433	broad.mit.edu	37	chr3	42576894	42576894	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtaagcccctcccagtcCttggggcttaggcaatggaa	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42576894	A	A	42576894	1	1	9	0	1	0	0	0	0	0	0	0	17296	696	24	2		2	VIPR1	3	42576894	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	315818	42576894	155445536	4435	12586											
SEC22C	9117	broad.mit.edu	37	chr3	42635870	42635870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttttttgttcatggtcGgtaaaaacaagcctctgatt	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42635870	T	T	42635870	1	4	9	0	1	0	0	0	0	0	0	0	14103	1131	39	1		1	SEC22C	3	42635870	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	58976	42635870	155386560	4436	12587											
NKTR	4820	broad.mit.edu	37	chr3	42681110	42681110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgagcagacgcctagtcGggatgatgatagccagtcca	13	9	0	5	rs150617855		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42681110	T	T	42681110	3	4	9	1	0	0	0	0	1	0	0	0	10543	1116	39	1	3960	1	NKTR	3	42681110	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45240	42681110	155341320	4437	12588											
CCDC13	152206	broad.mit.edu	37	chr3	42798645	42798645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcttatacaatcgccCgttctcgtccaccgtttccc	6	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42798645	A	A	42798645	3	1	9	1	0	0	0	0	1	0	0	0	2791	652	23	1	1920	1	CCDC13	3	42798645	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117535	42798645	155223785	4438	12589											
CCBP2	1238	broad.mit.edu	37	chr3	42906230	42906230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttacgtgcctcgcaggcGgatggttgagatctatctgc	13	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42906230	T	T	42906230	3	4	9	1	0	0	0	0	1	0	0	0	2760	1116	39	1	238	1	CCBP2	3	42906230	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107585	42906230	155116200	4439	12590											
ZNF662	389114	broad.mit.edu	37	chr3	42950218	42950218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctgaagacactggcctGggaggagccttgggattact	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42950218	T	T	42950218	1	4	9	0	1	0	0	0	0	0	0	0	18198	1363	47	2		2	ZNF662	3	42950218	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43988	42950218	155072212	4440	12591											
ZNF662	389114	broad.mit.edu	37	chr3	42956295	42956295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatcagagaattcacagtGgggtgaaaccctatgaatgt	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42956295	T	T	42956295	3	4	9	1	0	0	0	0	1	0	0	0	18198	1348	47	2	931	2	ZNF662	3	42956295	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6077	42956295	155066135	4441	12592											
SNRK	54861	broad.mit.edu	37	chr3	43345173	43345173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaaagttgacagactttGggttcagcaacaaatttcaa	8	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43345173	T	T	43345173	3	4	9	1	0	0	0	0	1	0	0	0	14965	1348	47	2	480	2	SNRK	3	43345173	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	388878	43345173	154677257	4442	12593											
ANO10	55129	broad.mit.edu	37	chr3	43591308	43591308	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcgcacagttagtgacCacagatataacactcatcgt	7	11	2	2	rs142801249		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43591308	A	A	43591308	2	1	9	1	0	0	0	0	0	0	0	1	696	581	21	2		2	ANO10	3	43591308	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	246135	43591308	154431122	4443	12594											
ANO10	55129	broad.mit.edu	37	chr3	43621871	43621871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgatacttcaaagcaaacCgagtgtaccaggtgtcctca	9	11	2	1	rs148873732	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43621871	A	A	43621871	3	1	9	1	0	0	0	0	1	0	0	0	696	652	23	1	1452	1	ANO10	3	43621871	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30563	43621871	154400559	4444	12595											
ZNF167	55888	broad.mit.edu	37	chr3	44619402	44619402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcgtgctcaacttggatGggacacacctagtctttctt	11	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44619402	T	T	44619402	1	4	9	0	1	0	0	0	0	0	0	0	17867	1363	47	2		2	ZNF167	3	44619402	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	997531	44619402	153403028	4445	12596											
ZNF660	285349	broad.mit.edu	37	chr3	44636202	44636202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgggaaagcctttagcCgtagttcaaaccttactcaa	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44636202	A	A	44636202	3	1	9	1	0	0	0	0	1	0	0	0	18197	652	23	1	519	1	ZNF660	3	44636202	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16800	44636202	153386228	4446	12597											
ZNF197	10168	broad.mit.edu	37	chr3	44673671	44673671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaatggcacttatgctcCtaacagcccagccccaggta	7	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44673671	A	A	44673671	3	1	9	1	0	0	0	0	1	0	0	0	17885	680	24	2	635	2	ZNF197	3	44673671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37469	44673671	153348759	4447	12598											
ZNF35	7584	broad.mit.edu	37	chr3	44700435	44700435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcaaagaagaggaaaacCagaaatgtaagaaatctgga	10	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44700435	A	A	44700435	3	1	9	1	0	0	0	0	1	0	0	0	17988	595	21	2	590	2	ZNF35	3	44700435	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26764	44700435	153321995	4448	12599											
KIF15	56992	broad.mit.edu	37	chr3	44847317	44847317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttattacctgaaatactcCgttttacaatatctattagg	4	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44847317	A	A	44847317	1	1	9	0	1	0	0	0	0	0	0	0	8347	667	23	1		1	KIF15	3	44847317	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	146882	44847317	153175113	4449	12600											
KIF15	56992	broad.mit.edu	37	chr3	44867708	44867708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaagggtgaatttgtccCgcatctgtgactgtcctttt	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44867708	A	A	44867708	1	1	9	0	1	0	0	0	0	0	0	0	8347	667	23	1		1	KIF15	3	44867708	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20391	44867708	153154722	4450	12601											
TMEM42	131616	broad.mit.edu	37	chr3	44905765	44905765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggaccttctttagccGgggcctcagtttctccatgt	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44905765	T	T	44905765	3	4	9	1	0	0	0	0	1	0	0	0	16289	1116	39	1	275	1	TMEM42	3	44905765	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38057	44905765	153116665	4451	12602											
TGM4	7047	broad.mit.edu	37	chr3	44943110	44943110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtggacaggcagtgcccCgatcctgcagcagtactaca	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44943110	A	A	44943110	3	1	9	1	0	0	0	0	1	0	0	0	15955	652	23	1	778	1	TGM4	3	44943110	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37345	44943110	153079320	4452	12603											
ZDHHC3	51304	broad.mit.edu	37	chr3	44975456	44975456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtggtggtccatcttcCgaatgcaccgcttacaaaca	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44975456	A	A	44975456	3	1	9	1	0	0	0	0	1	0	0	0	17742	652	23	1	804	1	ZDHHC3	3	44975456	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32346	44975456	153046974	4453	12604											
ZDHHC3	51304	broad.mit.edu	37	chr3	45000623	45000623	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagcccagacatactcacGgggtccgtcagcatggcccg	11	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45000623	T	T	45000623	2	4	9	1	0	0	0	0	0	0	0	1	17742	1130	39	1		1	ZDHHC3	3	45000623	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25167	45000623	153021807	4454	12605											
CDCP1	64866	broad.mit.edu	37	chr3	45127074	45127074	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggttaggaacacggacGggtgtctcagtgccctgctt	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45127074	T	T	45127074	1	4	9	0	1	0	0	0	0	0	0	0	3123	1131	39	1		1	CDCP1	3	45127074	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	126451	45127074	152895356	4455	12606											
CDCP1	64866	broad.mit.edu	37	chr3	45127447	45127447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgatgactgcatacacatGggagtcattgtcctttcgcc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45127447	T	T	45127447	3	4	9	1	0	0	0	0	1	0	0	0	3123	1348	47	2	320	2	CDCP1	3	45127447	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	373	45127447	152894983	4456	12607											
CDCP1	64866	broad.mit.edu	37	chr3	45127529	45127529	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttgtcattgtagataccCacagcggggcccttgtttgt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45127529	G	G	45127529	2	3	9	1	0	0	0	0	0	0	0	1	3123	581	21	4		4	CDCP1	3	45127529	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	45127529	152894901	4457	12608											
CDCP1	64866	broad.mit.edu	37	chr3	45152150	45152150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggatgtagtattcaaccCgctcctccttcctctcacag	7	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45152150	A	A	45152150	3	1	9	1	0	0	0	0	1	0	0	0	3123	652	23	1	1703	1	CDCP1	3	45152150	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24621	45152150	152870280	4458	12609											
CDCP1	64866	broad.mit.edu	37	chr3	45152319	45152319	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcaccctcaaacacagactCgatgatgcacagacctagtg	7	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45152319	A	A	45152319	4	1	9	1	0	0	0	0	0	1	0	0	3123	893	31	3	1872	3	CDCP1	3	45152319	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	169	45152319	152870111	4459	12610											
CDCP1	64866	broad.mit.edu	37	chr3	45152351	45152351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctagtgggagtggaaccCaaaccagaaagaatagggag	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45152351	A	A	45152351	1	1	9	0	1	0	0	0	0	0	0	0	3123	609	21	2		2	CDCP1	3	45152351	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	45152351	152870079	4460	12611											
LARS2	23395	broad.mit.edu	37	chr3	45517913	45517913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttagggagcaacacagccCaaagggaggactgagaaatg	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45517913	A	A	45517913	1	1	9	0	1	0	0	0	0	0	0	0	8707	609	21	2		2	LARS2	3	45517913	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	365562	45517913	152504517	4461	12612											
LARS2	23395	broad.mit.edu	37	chr3	45537850	45537850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacttcagatacactgaccCtcataatccacacaggtaaa	4	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45537850	A	A	45537850	3	1	9	1	0	0	0	0	1	0	0	0	8707	681	24	2	1653	2	LARS2	3	45537850	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19937	45537850	152484580	4462	12613											
LIMD1	8994	broad.mit.edu	37	chr3	45718326	45718326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagaaacacacagcaccCtctgctgattttggggactg	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45718326	A	A	45718326	1	1	9	0	1	0	0	0	0	0	0	0	8870	696	24	2		2	LIMD1	3	45718326	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	180476	45718326	152304104	4463	12614											
SACM1L	22908	broad.mit.edu	37	chr3	45745000	45745000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacgtacttaccattgacCgtgtgtccacagaggttacc	9	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45745000	A	A	45745000	3	1	9	1	0	0	0	0	1	0	0	0	13914	652	23	1	109	1	SACM1L	3	45745000	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26674	45745000	152277430	4464	12615											
SACM1L	22908	broad.mit.edu	37	chr3	45746689	45746689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtatactgggcacaatcCatctggtggcaggtaagaga	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45746689	A	A	45746689	3	1	9	1	0	0	0	0	1	0	0	0	13914	594	21	2	203	2	SACM1L	3	45746689	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1689	45746689	152275741	4465	12616											
SACM1L	22908	broad.mit.edu	37	chr3	45780331	45780331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattagaatctcatagtcCtttaagtgttccaagggact	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45780331	A	A	45780331	3	1	9	1	0	0	0	0	1	0	0	0	13914	681	24	2	1605	2	SACM1L	3	45780331	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33642	45780331	152242099	4466	12617											
SACM1L	22908	broad.mit.edu	37	chr3	45785230	45785230	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggagtctttactgaccCgctttccacatcagcccaag	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45785230	A	A	45785230	1	1	9	0	1	0	0	0	0	0	0	0	13914	667	23	1		1	SACM1L	3	45785230	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	4899	45785230	152237200	4467	12618											
LZTFL1	54585	broad.mit.edu	37	chr3	45868830	45868830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagagaaatccaaaggcGggatcagtgtggcttactgt	14	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45868830	T	T	45868830	1	4	9	0	1	0	0	0	0	0	0	0	9224	1131	39	1		1	LZTFL1	3	45868830	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	83600	45868830	152153600	4468	12619											
CCR9	10803	broad.mit.edu	37	chr3	45943401	45943401	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccctctgaggggtcttctCtgaggtgcatggttcttttg	12	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45943401	A	A	45943401	1	1	9	0	1	0	0	0	0	0	0	0	2978	928	32	3		3	CCR9	3	45943401	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	74571	45943401	152079029	4469	12620											
FYCO1	79443	broad.mit.edu	37	chr3	45977987	45977987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttccgaatcctgccccacGggcatgtcttcagtgtcctc	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45977987	T	T	45977987	2	4	9	1	0	0	0	0	0	0	0	1	6185	1103	39	1		1	FYCO1	3	45977987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34586	45977987	152044443	4470	12621											
FYCO1	79443	broad.mit.edu	37	chr3	46008650	46008650	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctaagctctctgtgccGggcttctgccagttgctggc	12	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46008650	T	T	46008650	2	4	9	1	0	0	0	0	0	0	0	1	6185	1115	39	1		1	FYCO1	3	46008650	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30663	46008650	152013780	4471	12622											
FYCO1	79443	broad.mit.edu	37	chr3	46009501	46009501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcgctccaggctggccCgggcatcctctttcagctga	12	16	2	1	rs116404907	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46009501	A	A	46009501	3	1	9	1	0	0	0	0	1	0	0	0	6185	652	23	1	3155	1	FYCO1	3	46009501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	851	46009501	152012929	4472	12623											
FYCO1	79443	broad.mit.edu	37	chr3	46016694	46016694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttagttcatttctgcacGggatgatcccaaaccccagc	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46016694	T	T	46016694	1	4	9	0	1	0	0	0	0	0	0	0	6185	1131	39	1		1	FYCO1	3	46016694	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7193	46016694	152005736	4473	12624											
FYCO1	79443	broad.mit.edu	37	chr3	46021273	46021273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggcacagaagtaatccCagtagtccttcttgttgccc	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46021273	A	A	46021273	3	1	9	1	0	0	0	0	1	0	0	0	6185	595	21	2	4284	2	FYCO1	3	46021273	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4579	46021273	152001157	4474	12625											
CCR1	1230	broad.mit.edu	37	chr3	46245282	46245282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgagtgaattcccattGggtcttggaaaagtataagc	13	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46245282	T	T	46245282	3	4	9	1	0	0	0	0	1	0	0	0	2969	1357	47	2	548	2	CCR1	3	46245282	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	224009	46245282	151777148	4475	12626											
CCR2	729230	broad.mit.edu	37	chr3	46399067	46399067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaataccaacgagagcGgtgaagaagtcaccaccttt	9	10	2	4	rs75236779		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46399067	T	T	46399067	3	4	9	1	0	0	0	0	1	0	0	0	2971	1116	39	1	51	1	CCR2	3	46399067	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	153785	46399067	151623363	4476	12627											
CCR2	729230	broad.mit.edu	37	chr3	46399694	46399694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctgctactcgggaatcCtgaaaaccctgcttcggtgt	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46399694	A	A	46399694	3	1	9	1	0	0	0	0	1	0	0	0	2971	680	24	2	678	2	CCR2	3	46399694	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	627	46399694	151622736	4477	12628											
CCR5	1234	broad.mit.edu	37	chr3	46414327	46414327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagtttgcattcatggaGggcaactaaatacattctag	8	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46414327	T	T	46414327	1	4	9	0	1	0	0	0	0	0	0	0	2974	1015	35	2		2	CCR5	3	46414327	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14633	46414327	151608103	4478	12629											
CCR5	1234	broad.mit.edu	37	chr3	46415038	46415038	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatggtcatctgctactcGggaatcctaaaaactctgct	8	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46415038	T	T	46415038	2	4	9	1	0	0	0	0	0	0	0	1	2974	1103	39	1		1	CCR5	3	46415038	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	711	46415038	151607392	4479	12630											
CCR5	1234	broad.mit.edu	37	chr3	46415066	46415066	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaaaactctgcttcggtgtCgaaatgagaagaagaggcac	11	7	1	3	rs146972949	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46415066	A	A	46415066	2	1	9	1	0	0	0	0	0	0	0	1	2974	876	31	3		3	CCR5	3	46415066	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	46415066	151607364	4480	12631											
CCR5	1234	broad.mit.edu	37	chr3	46415389	46415389	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttccagcaagaggctccCgagcgagcaagctcagttta	10	11	1	1	rs148802293		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46415389	A	A	46415389	2	1	9	1	0	0	0	0	0	0	0	1	2974	639	23	1		1	CCR5	3	46415389	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	323	46415389	151607041	4481	12632											
CCRL2	9034	broad.mit.edu	37	chr3	46450259	46450259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaaacactaaggttcaGggagcagaggtatagccttt	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46450259	T	T	46450259	3	4	9	1	0	0	0	0	1	0	0	0	2980	1000	35	2	731	2	CCRL2	3	46450259	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34870	46450259	151572171	4482	12633											
CCRL2	9034	broad.mit.edu	37	chr3	46450535	46450535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctgcgtagtaacacccCacttcaacccagggggcagt	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46450535	A	A	46450535	3	1	9	1	0	0	0	0	1	0	0	0	2980	594	21	2	1007	2	CCRL2	3	46450535	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	276	46450535	151571895	4483	12634											
LTF	4057	broad.mit.edu	37	chr3	46479419	46479419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcggggatgctagctaGggtctacttacgggaggttg	15	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46479419	T	T	46479419	1	4	9	0	1	0	0	0	0	0	0	0	9166	1015	35	2		2	LTF	3	46479419	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28884	46479419	151543011	4484	12635											
LTF	4057	broad.mit.edu	37	chr3	46488863	46488863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtacacatatcctccatcCaaactcatggcatcagcttc	5	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46488863	A	A	46488863	3	1	9	1	0	0	0	0	1	0	0	0	9166	593	21	2	925	2	LTF	3	46488863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9444	46488863	151533567	4485	12636											
LTF	4057	broad.mit.edu	37	chr3	46495760	46495760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatcaagtaagataaaagGggtcagtacccacggctcat	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46495760	T	T	46495760	1	4	9	0	1	0	0	0	0	0	0	0	9166	1247	43	2		2	LTF	3	46495760	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6897	46495760	151526670	4486	12637											
LRRC2	79442	broad.mit.edu	37	chr3	46586579	46586579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacacaaacgcactgctcCgtttgcctctgtccttggga	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46586579	A	A	46586579	3	1	9	1	0	0	0	0	1	0	0	0	9063	652	23	1	853	1	LRRC2	3	46586579	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90819	46586579	151435851	4487	12638											
TDGF1	6997	broad.mit.edu	37	chr3	46619481	46619481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactgcaggaagatggccCgcttctcttacaggtatgag	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46619481	A	A	46619481	3	1	9	1	0	0	0	0	1	0	0	0	15848	652	23	1	24	1	TDGF1	3	46619481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32902	46619481	151402949	4488	12639											
NBEAL2	23218	broad.mit.edu	37	chr3	47050088	47050088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagagcagcctacagccCtgacggtgacagaggacttt	13	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47050088	A	A	47050088	3	1	9	1	0	0	0	0	1	0	0	0	10283	680	24	2	8163	2	NBEAL2	3	47050088	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	430607	47050088	150972342	4489	12640											
SETD2	29072	broad.mit.edu	37	chr3	47125523	47125523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttcctcttcctctacaGggacattttctaattgatca	4	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47125523	T	T	47125523	3	4	9	1	0	0	0	0	1	0	0	0	14244	1000	35	2	1987	2	SETD2	3	47125523	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75435	47125523	150896907	4490	12641											
SETD2	29072	broad.mit.edu	37	chr3	47163425	47163425	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggagatgtgttctctcCgcatttcaagagagttagac	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47163425	A	A	47163425	4	1	9	1	0	0	0	0	0	1	0	0	14244	661	23	1	5069	1	SETD2	3	47163425	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37902	47163425	150859005	4491	12642											
SETD2	29072	broad.mit.edu	37	chr3	47163502	47163502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagcaatacctgaactcCcaataggttgatataaatca	6	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47163502	A	A	47163502	3	1	9	1	0	0	0	0	1	0	0	0	14244	623	22	2	5146	2	SETD2	3	47163502	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	47163502	150858928	4492	12643											
KIF9	64147	broad.mit.edu	37	chr3	47308639	47308639	+	Intron	SNP	C	A	A													cccgtgggaattgactgcccCgcctgggctgatcaaagagc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47308639	A	A	47308639	1	1	9	0	1	0	0	0	0	0	0	0	8380	667	23	1		1	KIF9	3	47308639	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145137	47308639	150713791	4493	12644	77	2									
KIF9	64147	broad.mit.edu	37	chr3	47308644	47308644	+	Intron	SNP	G	T	T													gggaattgactgccccgcctGggctgatcaaagagcttgca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47308644	T	T	47308644	1	4	9	0	1	0	0	0	0	0	0	0	8380	1363	47	2		2	KIF9	3	47308644	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5	47308644	150713786	4494	12645	77	2									
KIF9	64147	broad.mit.edu	37	chr3	47308726	47308726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtttttgttcatagtgtGggaggctataatcctgttgg	13	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47308726	T	T	47308726	3	4	9	1	0	0	0	0	1	0	0	0	8380	1348	47	2	1817	2	KIF9	3	47308726	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82	47308726	150713704	4495	12646											
KLHL18	23276	broad.mit.edu	37	chr3	47371499	47371499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagacaatgatgtgtgctGtgctgtacgacgctgccaac	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47371499	T	T	47371499	3	4	9	1	0	0	0	0	1	0	0	0	8444	1377	48	3	474	3	KLHL18	3	47371499	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62773	47371499	150650931	4496	12647											
SCAP	22937	broad.mit.edu	37	chr3	47455442	47455442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagcaccaggatctggcGggcaggctgggcctcactgt	15	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47455442	T	T	47455442	3	4	9	1	0	0	0	0	1	0	0	0	13989	1116	39	1	101	1	SCAP	3	47455442	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83943	47455442	150566988	4497	12648											
CSPG5	10675	broad.mit.edu	37	chr3	47604066	47604066	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccccccacccactaccccCgcttcctctcttcttgctct	2	23	3	0	rs143520374	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47604066	A	A	47604066	1	1	9	0	1	0	0	0	0	0	0	0	3995	667	23	1		1	CSPG5	3	47604066	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	148624	47604066	150418364	4498	12649											
CSPG5	10675	broad.mit.edu	37	chr3	47614202	47614202	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacgcagcttggtattctcCgtcttgagcaggtagagctt	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47614202	A	A	47614202	2	1	9	1	0	0	0	0	0	0	0	1	3995	639	23	1		1	CSPG5	3	47614202	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10136	47614202	150408228	4499	12650											
CSPG5	10675	broad.mit.edu	37	chr3	47618218	47618218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcctcccaaagtgctGggattacaggcgtgagccaa	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47618218	T	T	47618218	1	4	9	0	1	0	0	0	0	0	0	0	3995	1363	47	2		2	CSPG5	3	47618218	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4016	47618218	150404212	4500	12651											
CSPG5	10675	broad.mit.edu	37	chr3	47618383	47618383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccattgtgacagtaacttGggaagaggtcgcacactgac	12	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47618383	T	T	47618383	3	4	9	1	0	0	0	0	1	0	0	0	3995	1348	47	2	502	2	CSPG5	3	47618383	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	165	47618383	150404047	4501	12652											
SMARCC1	6599	broad.mit.edu	37	chr3	47702803	47702803	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcttctctggctcatcGggccctgtgcctgcaatgca	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47702803	T	T	47702803	2	4	9	1	0	0	0	0	0	0	0	1	14889	1103	39	1		1	SMARCC1	3	47702803	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	84420	47702803	150319627	4502	12653											
SMARCC1	6599	broad.mit.edu	37	chr3	47755969	47755969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatcattactatggaccCaagtatcatagctataaagg	6	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47755969	A	A	47755969	3	1	9	1	0	0	0	0	1	0	0	0	14889	595	21	2	2673	2	SMARCC1	3	47755969	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53166	47755969	150266461	4503	12654											
DHX30	22907	broad.mit.edu	37	chr3	47883235	47883235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacagctaaggtgagttGggtctcctagaagtttgtgt	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47883235	T	T	47883235	1	4	9	0	1	0	0	0	0	0	0	0	4544	1363	47	2		2	DHX30	3	47883235	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	127266	47883235	150139195	4504	12655											
DHX30	22907	broad.mit.edu	37	chr3	47888783	47888783	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgaggatgaatgcgcactCgatttggaccttgtgactga	12	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47888783	A	A	47888783	2	1	9	1	0	0	0	0	0	0	0	1	4544	871	31	3		3	DHX30	3	47888783	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5548	47888783	150133647	4505	12656											
MAP4	4134	broad.mit.edu	37	chr3	47912624	47912624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggagtgagagataacacGggttcagggagagagagaaa	17	3	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47912624	T	T	47912624	1	4	9	0	1	0	0	0	0	0	0	0	9350	1131	39	1		1	MAP4	3	47912624	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23841	47912624	150109806	4506	12657											
MAP4	4134	broad.mit.edu	37	chr3	47958574	47958574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttagatggtgccatgtcaGtagtcttcagtcccatcatt	8	10	4	1	rs143125102	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47958574	T	T	47958574	3	4	9	1	0	0	0	0	1	0	0	0	9350	1029	36	3	4126	3	MAP4	3	47958574	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45950	47958574	150063856	4507	12658											
MAP4	4134	broad.mit.edu	37	chr3	48040237	48040237	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttccaacagtttctccCacaacatcatcaaaggcctc	4	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48040237	A	A	48040237	2	1	9	1	0	0	0	0	0	0	0	1	9350	581	21	2		2	MAP4	3	48040237	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	81663	48040237	149982193	4508	12659											
CDC25A	993	broad.mit.edu	37	chr3	48219339	48219339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacacacacacacacacacGgtaccttcagattctctcca	4	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48219339	T	T	48219339	1	4	9	0	1	0	0	0	0	0	0	0	3092	1131	39	1		1	CDC25A	3	48219339	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	179102	48219339	149803091	4509	12660											
CDC25A	993	broad.mit.edu	37	chr3	48219386	48219386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccacgaagccatcatcCtcatcagacaaagtggctgt	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48219386	A	A	48219386	3	1	9	1	0	0	0	0	1	0	0	0	3092	680	24	2	968	2	CDC25A	3	48219386	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	48219386	149803044	4510	12661											
CAMP	820	broad.mit.edu	37	chr3	48266806	48266806	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagagatttgccctgctGggtgatttcttccggaaatc	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48266806	T	T	48266806	2	4	9	1	0	0	0	0	0	0	0	1	2636	1335	47	2		2	CAMP	3	48266806	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47420	48266806	149755624	4511	12662											
FBXW12	285231	broad.mit.edu	37	chr3	48423618	48423618	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatcccctaaacaactttTtttttttgagacggagtctc	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48423618	A	A	48423618	1	1	9	0	1	0	0	0	0	0	0	0	5822	1856	64	5		5	FBXW12	3	48423618	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	156812	48423618	149598812	4512	12663											
PLXNB1	5364	broad.mit.edu	37	chr3	48461032	48461032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggtagtcgaggctggacGggaggatgaggggggcggga	23	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48461032	T	T	48461032	3	4	9	1	0	0	0	0	1	0	0	0	12218	1116	39	1	3856	1	PLXNB1	3	48461032	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37414	48461032	149561398	4513	12664											
CCDC51	79714	broad.mit.edu	37	chr3	48474185	48474185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacatctctgtctctggtcGggggactacctgcctgtgac	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48474185	T	T	48474185	3	4	9	1	0	0	0	0	1	0	0	0	2849	1116	39	1	370	1	CCDC51	3	48474185	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13153	48474185	149548245	4514	12665											
ATRIP	84126	broad.mit.edu	37	chr3	48493215	48493215	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactacatcagacggaatcCgttctagaggaacagagaag	10	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48493215	A	A	48493215	2	1	9	1	0	0	0	0	0	0	0	1	1209	639	23	1		1	ATRIP	3	48493215	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19030	48493215	149529215	4515	12666											
ATRIP	84126	broad.mit.edu	37	chr3	48502063	48502063	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaccaaggacagcaccCactgttgaagatgcttcttc	9	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48502063	G	G	48502063	3	3	9	1	0	0	0	0	1	0	0	0	1209	594	21	4	1640	4	ATRIP	3	48502063	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8848	48502063	149520367	4516	12667											
PFKFB4	5210	broad.mit.edu	37	chr3	48577180	48577180	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtcgctctccgttctcGggtggtgtttgtggcatcaa	14	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48577180	T	T	48577180	2	4	9	1	0	0	0	0	0	0	0	1	11858	1124	39	1		1	PFKFB4	3	48577180	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	75117	48577180	149445250	4517	12668											
COL7A1	1294	broad.mit.edu	37	chr3	48605533	48605533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcctaccttgaggcccCggggacccatgaagccaaca	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48605533	A	A	48605533	3	1	9	1	0	0	0	0	1	0	0	0	3736	652	23	1	1025	1	COL7A1	3	48605533	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28353	48605533	149416897	4518	12669											
COL7A1	1294	broad.mit.edu	37	chr3	48606836	48606836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtccccattgtctcccCgaggtcctttgtcaccatcc	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48606836	A	A	48606836	3	1	9	1	0	0	0	0	1	0	0	0	3736	652	23	1	1244	1	COL7A1	3	48606836	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1303	48606836	149415594	4519	12670											
COL7A1	1294	broad.mit.edu	37	chr3	48612692	48612692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctgaaatgcaaatagcGggtgagggccaagcccatgg	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48612692	T	T	48612692	1	4	9	0	1	0	0	0	0	0	0	0	3736	1131	39	1		1	COL7A1	3	48612692	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5856	48612692	149409738	4520	12671											
COL7A1	1294	broad.mit.edu	37	chr3	48616730	48616730	+	Intron	DEL	A	-	-													cctgtggaaaatagagtggtAagaggccaccaaggctgagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48616730	-	-	48616730	6	5	9	0	1	1	0	1	0	0	0	0	3736	377	13	0		0	COL7A1	3	48616730	Intron	DEL	A	TCGA-05-4396-01A-21D-1855-08	4038	48616730	149405700	4521	12672											
COL7A1	1294	broad.mit.edu	37	chr3	48618704	48618704	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcttacatctcgtcctcGggggccaacaggtcctgggg	13	14	2	0	rs121912847		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48618704	T	T	48618704	2	4	9	1	0	0	0	0	0	0	0	1	3736	1124	39	1		1	COL7A1	3	48618704	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1974	48618704	149403726	4522	12673											
COL7A1	1294	broad.mit.edu	37	chr3	48619356	48619356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttaccttttctcctttGggtccagcaacagcaggtcc	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48619356	T	T	48619356	2	4	9	1	0	0	0	0	0	0	0	1	3736	1335	47	2		2	COL7A1	3	48619356	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	652	48619356	149403074	4523	12674											
COL7A1	1294	broad.mit.edu	37	chr3	48623244	48623244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacccattctctattcccCgcccgcaggggcactcacca	6	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48623244	A	A	48623244	1	1	9	0	1	0	0	0	0	0	0	0	3736	667	23	1		1	COL7A1	3	48623244	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3888	48623244	149399186	4524	12675											
COL7A1	1294	broad.mit.edu	37	chr3	48623718	48623718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatgatagccttttcaGggccacccctattcccagac	8	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48623718	T	T	48623718	1	4	9	0	1	0	0	0	0	0	0	0	3736	1015	35	2		2	COL7A1	3	48623718	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	474	48623718	149398712	4525	12676											
COL7A1	1294	broad.mit.edu	37	chr3	48623840	48623840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactagcagaaccatcacccCtggtacgtgctggcggcgcc	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48623840	A	A	48623840	3	1	9	1	0	0	0	0	1	0	0	0	3736	681	24	2	5731	2	COL7A1	3	48623840	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122	48623840	149398590	4526	12677											
COL7A1	1294	broad.mit.edu	37	chr3	48630861	48630861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaggtcctgggacttccCgtctgtgatcaggatgcaga	12	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48630861	A	A	48630861	3	1	9	1	0	0	0	0	1	0	0	0	3736	652	23	1	8846	1	COL7A1	3	48630861	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7021	48630861	149391569	4527	12678											
CELSR3	1951	broad.mit.edu	37	chr3	48664052	48664052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtccctcctgctgttccCaccctactcactgtggcagg	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48664052	A	A	48664052	1	1	9	0	1	0	0	0	0	0	0	0	3253	609	21	2		2	CELSR3	3	48664052	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33191	48664052	149358378	4528	12679											
CELSR3	1951	broad.mit.edu	37	chr3	48668412	48668412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgcctcctacacatccCgcatcacccagacctggttg	8	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48668412	A	A	48668412	1	1	9	0	1	0	0	0	0	0	0	0	3253	667	23	1		1	CELSR3	3	48668412	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4360	48668412	149354018	4529	12680											
CELSR3	1951	broad.mit.edu	37	chr3	48680182	48680182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcacctgaggtagctgcGgccccgctggctgtcctggt	13	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48680182	T	T	48680182	3	4	9	1	0	0	0	0	1	0	0	0	3253	1116	39	1	1420	1	CELSR3	3	48680182	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11770	48680182	149342248	4530	12681											
IP6K2	51447	broad.mit.edu	37	chr3	48725762	48725762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctatcaggctctggagccCgaagatatagccagcatcct	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48725762	A	A	48725762	3	1	9	1	0	0	0	0	1	0	0	0	7859	652	23	1	59	1	IP6K2	3	48725762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45580	48725762	149296668	4531	12682											
IP6K2	51447	broad.mit.edu	37	chr3	48725827	48725827	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccatacagcctgcaggtgGtgtgtgcaaagtcgatcatg	13	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48725827	A	A	48725827	3	1	9	1	0	0	0	0	1	0	0	0	7859	1261	44	4	124	4	IP6K2	3	48725827	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65	48725827	149296603	4532	12683											
IP6K2	51447	broad.mit.edu	37	chr3	48728846	48728846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgggaacttatattcccCttcttctctacagtgtagta	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48728846	A	A	48728846	3	1	9	1	0	0	0	0	1	0	0	0	7859	680	24	2	794	2	IP6K2	3	48728846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3019	48728846	149293584	4533	12684											
PRKAR2A	5576	broad.mit.edu	37	chr3	48788982	48788982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctgaccagaaggttttGgtgtcacactaagaaggctc	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48788982	T	T	48788982	1	4	9	0	1	0	0	0	0	0	0	0	12611	1363	47	2		2	PRKAR2A	3	48788982	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	60136	48788982	149233448	4534	12685											
SLC25A20	788	broad.mit.edu	37	chr3	48916859	48916859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatacgccagataacatccCagctgcaaaaagctggggat	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48916859	A	A	48916859	3	1	9	1	0	0	0	0	1	0	0	0	14597	594	21	2	580	2	SLC25A20	3	48916859	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127877	48916859	149105571	4535	12686											
ARIH2	10425	broad.mit.edu	37	chr3	49019149	49019149	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattacatggagtccggaccCaggaagaagctggtaaggca	13	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49019149	A	A	49019149	2	1	9	1	0	0	0	0	0	0	0	1	926	581	21	2		2	ARIH2	3	49019149	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	102290	49019149	149003281	4536	12687											
WDR6	11180	broad.mit.edu	37	chr3	49049119	49049119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactttggtgggcatctgcGgatgataaagcgagtgcaga	16	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49049119	T	T	49049119	3	4	9	1	0	0	0	0	1	0	0	0	17437	1116	39	1	248	1	WDR6	3	49049119	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29970	49049119	148973311	4537	12688											
WDR6	11180	broad.mit.edu	37	chr3	49049745	49049745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctttgggcacagcgccCgtgtgtggcaggtcaagctt	14	11	1	0	rs144741396		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49049745	A	A	49049745	3	1	9	1	0	0	0	0	1	0	0	0	17437	652	23	1	874	1	WDR6	3	49049745	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	626	49049745	148972685	4538	12689											
WDR6	11180	broad.mit.edu	37	chr3	49053218	49053218	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctgcacgtcccacccCattttgctgtgtgctcaccc	6	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49053218	A	A	49053218	1	1	9	0	1	0	0	0	0	0	0	0	17437	609	21	2		2	WDR6	3	49053218	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3473	49053218	148969212	4539	12690											
NDUFAF3	25915	broad.mit.edu	37	chr3	49060158	49060158	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcccaccaggacatcacCgaagacagcttttccctctt	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49060158	A	A	49060158	2	1	9	1	0	0	0	0	0	0	0	1	10371	639	23	1		1	NDUFAF3	3	49060158	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6940	49060158	148962272	4540	12691											
NDUFAF3	25915	broad.mit.edu	37	chr3	49060195	49060195	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctggttgctggagcccCggataggtactggggaaggg	17	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49060195	A	A	49060195	2	1	9	1	0	0	0	0	0	0	0	1	10371	643	23	1		1	NDUFAF3	3	49060195	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	49060195	148962235	4541	12692											
IMPDH2	3615	broad.mit.edu	37	chr3	49062543	49062543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcccactggccttcacGggtactgggcctcacctgtg	14	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49062543	T	T	49062543	1	4	9	0	1	0	0	0	0	0	0	0	7797	1131	39	1		1	IMPDH2	3	49062543	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2348	49062543	148959887	4542	12693											
IMPDH2	3615	broad.mit.edu	37	chr3	49064351	49064351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggacatgaatcaggaccCtaggcattagttccaggccc	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49064351	A	A	49064351	1	1	9	0	1	0	0	0	0	0	0	0	7797	696	24	2		2	IMPDH2	3	49064351	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1808	49064351	148958079	4543	12694											
QRICH1	54870	broad.mit.edu	37	chr3	49070104	49070104	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccttcaagtaccggatactCgtgcttttatccttgggatt	9	10	1	0	rs148698795	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49070104	A	A	49070104	2	1	9	1	0	0	0	0	0	0	0	1	12987	871	31	3		3	QRICH1	3	49070104	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5753	49070104	148952326	4544	12695											
QRICH1	54870	broad.mit.edu	37	chr3	49081837	49081837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaccaagtggagtgaccCggggctgaacatccttcaga	11	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49081837	A	A	49081837	3	1	9	1	0	0	0	0	1	0	0	0	12987	652	23	1	578	1	QRICH1	3	49081837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11733	49081837	148940593	4545	12696											
QRICH1	54870	broad.mit.edu	37	chr3	49084505	49084505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccaagacactcactccCaatgggtgccaatctgttct	6	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49084505	A	A	49084505	3	1	9	1	0	0	0	0	1	0	0	0	12987	594	21	2	845	2	QRICH1	3	49084505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2668	49084505	148937925	4546	12697											
QRICH1	54870	broad.mit.edu	37	chr3	49114405	49114405	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagaccgtgcctttactcGgatgtactcttcaaaggaga	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49114405	T	T	49114405	2	4	9	1	0	0	0	0	0	0	0	1	12987	1124	39	1		1	QRICH1	3	49114405	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29900	49114405	148908025	4547	12698											
QARS	5859	broad.mit.edu	37	chr3	49136499	49136499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagagccaagtgtaccccCagctacacacacacatgtga	7	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49136499	A	A	49136499	1	1	9	0	1	0	0	0	0	0	0	0	12979	609	21	2		2	QARS	3	49136499	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22094	49136499	148885931	4548	12699											
QARS	5859	broad.mit.edu	37	chr3	49136574	49136574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagttggtgatgatgaccCgtagtgactccagcacagcc	12	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49136574	A	A	49136574	3	1	9	1	0	0	0	0	1	0	0	0	12979	652	23	1	628	1	QARS	3	49136574	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	49136574	148885856	4549	12700											
LAMB2	3913	broad.mit.edu	37	chr3	49158832	49158832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtttagggggggtttccCgcagtcttgtgtctctggtg	15	8	3	0	rs115838211	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49158832	A	A	49158832	1	1	9	0	1	0	0	0	0	0	0	0	8683	667	23	1		1	LAMB2	3	49158832	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22258	49158832	148863598	4550	12701											
LAMB2	3913	broad.mit.edu	37	chr3	49160626	49160626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagagcttgccaagtgccCgctggttggccatgtgtttg	14	10	0	1	rs146522641	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49160626	A	A	49160626	3	1	9	1	0	0	0	0	1	0	0	0	8683	652	23	1	1261	1	LAMB2	3	49160626	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1794	49160626	148861804	4551	12702											
LAMB2	3913	broad.mit.edu	37	chr3	49167419	49167419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggaatcacagcgaccacCgtcttgagaacccatggggt	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49167419	A	A	49167419	3	1	9	1	0	0	0	0	1	0	0	0	8683	652	23	1	4230	1	LAMB2	3	49167419	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6793	49167419	148855011	4552	12703											
LAMB2	3913	broad.mit.edu	37	chr3	49168416	49168416	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggctggtgcccctggggcGggtgcacactctgaggcgtg	19	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49168416	C	C	49168416	2	2	9	1	0	0	0	0	0	0	0	1	8683	1103	39	4		4	LAMB2	3	49168416	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	997	49168416	148854014	4553	12704											
CCDC71	64925	broad.mit.edu	37	chr3	49200498	49200498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccaacagtctcagggcGgtttttctggcccttccttg	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49200498	T	T	49200498	3	4	9	1	0	0	0	0	1	0	0	0	2872	1116	39	1	263	1	CCDC71	3	49200498	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32082	49200498	148821932	4554	12705											
CCDC71	64925	broad.mit.edu	37	chr3	49201304	49201304	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggaagcagtgtggccCgacctgcaggcaaccgcatg	15	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49201304	A	A	49201304	3	1	9	1	0	0	0	0	1	0	0	0	2872	652	23	1	1069	1	CCDC71	3	49201304	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	806	49201304	148821126	4555	12706											
LOC646498	646498	broad.mit.edu	37	chr3	49227433	49227433	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaactggtctagtcaccccCgctgccttcaggtctgcctt	9	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49227433	G	G	49227433	1	3	9	0	1	0	0	0	0	0	0	0	8968	667	23	4		4	LOC646498	3	49227433	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	26129	49227433	148794997	4556	12707											
CCDC36	339834	broad.mit.edu	37	chr3	49294626	49294626	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcagtgacctcaatctcGgatgttcagagacccctcta	9	12	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49294626	T	T	49294626	4	4	9	1	0	0	0	0	0	1	0	0	2835	1117	39	1	1722	1	CCDC36	3	49294626	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67193	49294626	148727804	4557	12708											
USP4	7375	broad.mit.edu	37	chr3	49322011	49322011	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacatgctcacatgcttctCgtaggcctatgggaatcaaa	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49322011	A	A	49322011	4	1	9	1	0	0	0	0	0	1	0	0	17198	893	31	3	633	3	USP4	3	49322011	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27385	49322011	148700419	4558	12709											
USP4	7375	broad.mit.edu	37	chr3	49335959	49335959	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaagtatcccaaatagaccGagtgccactgatcaccccgc	8	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49335959	T	T	49335959	1	4	9	0	1	0	0	0	0	0	0	0	17198	1073	37	3		3	USP4	3	49335959	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13948	49335959	148686471	4559	12710											
USP4	7375	broad.mit.edu	37	chr3	49335977	49335977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagtgccactgatcacccCgccttacattttctgcagca	7	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49335977	A	A	49335977	1	1	9	0	1	0	0	0	0	0	0	0	17198	667	23	1		1	USP4	3	49335977	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	49335977	148686453	4560	12711											
USP4	7375	broad.mit.edu	37	chr3	49362115	49362115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgtgagcctacaacaaGggagaaaaaattcacttact	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49362115	T	T	49362115	1	4	9	0	1	0	0	0	0	0	0	0	17198	1015	35	2		2	USP4	3	49362115	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26138	49362115	148660315	4561	12712											
USP4	7375	broad.mit.edu	37	chr3	49363042	49363042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacagctcgagatgatttGggtaacaaatctaaagaggg	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49363042	T	T	49363042	1	4	9	0	1	0	0	0	0	0	0	0	17198	1363	47	2		2	USP4	3	49363042	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	927	49363042	148659388	4562	12713											
USP4	7375	broad.mit.edu	37	chr3	49363183	49363183	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttgctgaaatggcaactCagcacattggtggggtcact	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49363183	A	A	49363183	2	1	9	1	0	0	0	0	0	0	0	1	17198	813	29	3		3	USP4	3	49363183	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	141	49363183	148659247	4563	12714											
GPX1	2876	broad.mit.edu	37	chr3	49394841	49394841	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaggcacagctgggcccttGagacagcagggcttcgatgt	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49394841	T	T	49394841	3	4	9	1	0	0	0	0	1	0	0	0	6805	1299	45	3	23	3	GPX1	3	49394841	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31658	49394841	148627589	4564	12715											
AMT	275	broad.mit.edu	37	chr3	49458983	49458983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctccatcagcttcaccCggtcactaccaagtatcttg	6	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49458983	A	A	49458983	3	1	9	1	0	0	0	0	1	0	0	0	589	652	23	1	986	1	AMT	3	49458983	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64142	49458983	148563447	4565	12716											
DAG1	1605	broad.mit.edu	37	chr3	49568597	49568597	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacaggatgcggagcttctCagaagtagagcttcacaaca	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49568597	A	A	49568597	4	1	9	1	0	0	0	0	0	1	0	0	4258	838	29	3	659	3	DAG1	3	49568597	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109614	49568597	148453833	4566	12717											
BSN	8927	broad.mit.edu	37	chr3	49694892	49694892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcaggtctcgtcttcccCgccactcagactcaggctct	9	18	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49694892	A	A	49694892	3	1	9	1	0	0	0	0	1	0	0	0	1539	652	23	1	7921	1	BSN	3	49694892	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126295	49694892	148327538	4567	12718											
APEH	327	broad.mit.edu	37	chr3	49719941	49719941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctccattcagctgagcGggcagctggctgcagcatgc	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49719941	T	T	49719941	1	4	9	0	1	0	0	0	0	0	0	0	770	1131	39	1		1	APEH	3	49719941	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25049	49719941	148302489	4568	12719											
MST1	4485	broad.mit.edu	37	chr3	49721941	49721941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggaagatccagggctGggcctcctggccaccagcag	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49721941	T	T	49721941	1	4	9	0	1	0	0	0	0	0	0	0	9984	1363	47	2		2	MST1	3	49721941	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2000	49721941	148300489	4569	12720											
RNF123	63891	broad.mit.edu	37	chr3	49728565	49728565	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgtgtctggctcagccCccaggaccactggctgccca	11	17	3	0	rs149188295	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49728565	A	A	49728565	1	1	9	0	1	0	0	0	0	0	0	0	13544	638	22	2		2	RNF123	3	49728565	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	6624	49728565	148293865	4570	12721											
RNF123	63891	broad.mit.edu	37	chr3	49739861	49739861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtcctccaggccagccCactgtggatccccggctgca	12	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49739861	A	A	49739861	1	1	9	0	1	0	0	0	0	0	0	0	13544	609	21	2		2	RNF123	3	49739861	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11296	49739861	148282569	4571	12722											
GMPPB	29925	broad.mit.edu	37	chr3	49759471	49759471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaacggatccgggcatccCgcagcaccgtgcaccgccgg	15	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49759471	A	A	49759471	3	1	9	1	0	0	0	0	1	0	0	0	6559	652	23	1	289	1	GMPPB	3	49759471	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19610	49759471	148262959	4572	12723											
IP6K1	9807	broad.mit.edu	37	chr3	49775724	49775724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccggtgcaggctccggcGggagtgtttgcgccgaggtt	18	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49775724	T	T	49775724	3	4	9	1	0	0	0	0	1	0	0	0	7858	1116	39	1	986	1	IP6K1	3	49775724	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16253	49775724	148246706	4573	12724											
UBA7	7318	broad.mit.edu	37	chr3	49848060	49848060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggcccccagtcccactaGggcaaagactttgagcagct	10	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49848060	T	T	49848060	3	4	9	1	0	0	0	0	1	0	0	0	16959	991	35	2	1733	2	UBA7	3	49848060	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	72336	49848060	148174370	4574	12725											
MST1R	4486	broad.mit.edu	37	chr3	49927492	49927492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcagcacaccaaatgacCactgtggaaagggggaggtg	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49927492	A	A	49927492	3	1	9	1	0	0	0	0	1	0	0	0	9985	608	21	2	398	2	MST1R	3	49927492	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79432	49927492	148094938	4575	12726											
MST1R	4486	broad.mit.edu	37	chr3	49939933	49939933	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgtccagcaggtcaatGgggaaggcacagacgacaga	15	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49939933	T	T	49939933	2	4	9	1	0	0	0	0	0	0	0	1	9985	1335	47	2		2	MST1R	3	49939933	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12441	49939933	148082497	4576	12727											
RBM6	10180	broad.mit.edu	37	chr3	50000053	50000053	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaaggatttacttgttGgggccctcttgataaaaaga	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50000053	T	T	50000053	1	4	9	0	1	0	0	0	0	0	0	0	13252	1363	47	2		2	RBM6	3	50000053	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	60120	50000053	148022377	4577	12728											
RBM6	10180	broad.mit.edu	37	chr3	50004930	50004930	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaagaaaggtttgctccCgggtggaacagggattatcc	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50004930	A	A	50004930	2	1	9	1	0	0	0	0	0	0	0	1	13252	639	23	1		1	RBM6	3	50004930	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4877	50004930	148017500	4578	12729											
RBM6	10180	broad.mit.edu	37	chr3	50036913	50036913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtggagttttcactcttGgaagatgccatcggatgcat	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50036913	T	T	50036913	3	4	9	1	0	0	0	0	1	0	0	0	13252	1339	47	2	1542	2	RBM6	3	50036913	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31983	50036913	147985517	4579	12730											
RBM6	10180	broad.mit.edu	37	chr3	50091792	50091792	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaaacattggtgggcacCgatcttcctgttcattctgc	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50091792	A	A	50091792	2	1	9	1	0	0	0	0	0	0	0	1	13252	644	23	1		1	RBM6	3	50091792	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54879	50091792	147930638	4580	12731											
RBM6	10180	broad.mit.edu	37	chr3	50091820	50091820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcattctgcaagaaccCaagagaaggtgagtggcgaa	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50091820	A	A	50091820	3	1	9	1	0	0	0	0	1	0	0	0	13252	594	21	2	1711	2	RBM6	3	50091820	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	50091820	147930610	4581	12732											
RBM6	10180	broad.mit.edu	37	chr3	50095771	50095771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgacagtcagattcttGggacttcaaaaatttatctt	6	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50095771	T	T	50095771	1	4	9	0	1	0	0	0	0	0	0	0	13252	1363	47	2		2	RBM6	3	50095771	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3951	50095771	147926659	4582	12733											
SEMA3F	6405	broad.mit.edu	37	chr3	50220183	50220183	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggcgccgcagagcccCgcggtgtacgcccgcatcgg	16	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50220183	A	A	50220183	2	1	9	1	0	0	0	0	0	0	0	1	14142	639	23	1		1	SEMA3F	3	50220183	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	124412	50220183	147802247	4583	12734											
SEMA3B	7869	broad.mit.edu	37	chr3	50311966	50311966	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcaaattgccgcggaccGggttgcagccgctgacggac	13	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50311966	T	T	50311966	3	4	9	1	0	0	0	0	1	0	0	0	14138	1116	39	1	1351	1	SEMA3B	3	50311966	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91783	50311966	147710464	4584	12735											
HYAL1	3373	broad.mit.edu	37	chr3	50339933	50339933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgcctgtaccagtgccCgtgagcgctgccggtaaatg	14	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50339933	A	A	50339933	3	1	9	1	0	0	0	0	1	0	0	0	7533	652	23	1	864	1	HYAL1	3	50339933	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27967	50339933	147682497	4585	12736											
CACNA2D2	9254	broad.mit.edu	37	chr3	50421787	50421787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcagaaagggcaccccCgagcaatgtcagggctggaa	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50421787	A	A	50421787	1	1	9	0	1	0	0	0	0	0	0	0	2575	667	23	1		1	CACNA2D2	3	50421787	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	81854	50421787	147600643	4586	12737											
CACNA2D2	9254	broad.mit.edu	37	chr3	50471749	50471749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacacacacctaccttcaGggcctgcaccttcctgtcca	5	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50471749	T	T	50471749	3	4	9	1	0	0	0	0	1	0	0	0	2575	991	35	2	3206	2	CACNA2D2	3	50471749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49962	50471749	147550681	4587	12738											
HEMK1	51409	broad.mit.edu	37	chr3	50615226	50615226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggtaggggtctgccccCgtgcctacccctttctccct	11	16	2	0	rs144621122	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50615226	A	A	50615226	1	1	9	0	1	0	0	0	0	0	0	0	7118	667	23	1		1	HEMK1	3	50615226	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	143477	50615226	147407204	4588	12739											
DOCK3	1795	broad.mit.edu	37	chr3	50900756	50900756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctcagttcaggtctgagGggaatgcagatagcctgtgt	14	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50900756	T	T	50900756	1	4	9	0	1	0	0	0	0	0	0	0	4728	1247	43	2		2	DOCK3	3	50900756	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	285530	50900756	147121674	4589	12740											
DOCK3	1795	broad.mit.edu	37	chr3	51196729	51196729	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcgttgcccatgtgatcCgaataggtactgttcacctt	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51196729	A	A	51196729	2	1	9	1	0	0	0	0	0	0	0	1	4728	644	23	1		1	DOCK3	3	51196729	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	295973	51196729	146825701	4590	12741											
DOCK3	1795	broad.mit.edu	37	chr3	51264771	51264771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctaccactcctttgtcCtctaccacagtaatagtcct	4	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51264771	A	A	51264771	3	1	9	1	0	0	0	0	1	0	0	0	4728	681	24	2	1497	2	DOCK3	3	51264771	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68042	51264771	146757659	4591	12742											
DOCK3	1795	broad.mit.edu	37	chr3	51264792	51264792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaccacagtaatagtcctCgctggggagaaattatcaaa	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51264792	A	A	51264792	3	1	9	1	0	0	0	0	1	0	0	0	4728	884	31	3	1518	3	DOCK3	3	51264792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	51264792	146757638	4592	12743											
RBM15B	29890	broad.mit.edu	37	chr3	51431449	51431449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagcactaaggacattGggcaagctagaagaagaaca	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51431449	T	T	51431449	3	4	9	1	0	0	0	0	1	0	0	0	13225	1339	47	2	2621	2	RBM15B	3	51431449	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	166657	51431449	146590981	4593	12744											
RBM15B	29890	broad.mit.edu	37	chr3	51431521	51431521	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcccaagcctgtctttccCagcgtcatgtttgtgtcaca	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51431521	A	A	51431521	1	1	9	0	1	0	0	0	0	0	0	0	13225	609	21	2		2	RBM15B	3	51431521	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	51431521	146590909	4594	12745											
VPRBP	9730	broad.mit.edu	37	chr3	51449950	51449950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattctgaaatagaacatcCagtccataaggagcagttac	8	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51449950	A	A	51449950	1	1	9	0	1	0	0	0	0	0	0	0	17312	609	21	2		2	VPRBP	3	51449950	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18429	51449950	146572480	4595	12746											
VPRBP	9730	broad.mit.edu	37	chr3	51464915	51464915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaacttcagctggttcCcaatatagctgcgctgggcc	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51464915	A	A	51464915	3	1	9	1	0	0	0	0	1	0	0	0	17312	624	22	2	2820	2	VPRBP	3	51464915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14965	51464915	146557515	4596	12747											
RAD54L2	23132	broad.mit.edu	37	chr3	51667599	51667599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcccttgtcagattggcGggatccggttcctttacgat	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51667599	T	T	51667599	3	4	9	1	0	0	0	0	1	0	0	0	13102	1116	39	1	854	1	RAD54L2	3	51667599	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	202684	51667599	146354831	4597	12748											
GRM2	2912	broad.mit.edu	37	chr3	51749489	51749489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccgctggggcgatgcctGggctgtgggacctgtcacca	15	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51749489	T	T	51749489	3	4	9	1	0	0	0	0	1	0	0	0	6863	1357	47	2	1710	2	GRM2	3	51749489	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81890	51749489	146272941	4598	12749											
IQCF1	132141	broad.mit.edu	37	chr3	51936966	51936966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctactagcactaggacatGggatcaatgacatccaagtc	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51936966	T	T	51936966	1	4	9	0	1	0	0	0	0	0	0	0	7877	1363	47	2		2	IQCF1	3	51936966	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	187477	51936966	146085464	4599	12750											
IQCF1	132141	broad.mit.edu	37	chr3	51937040	51937040	+	Missense_Mutation	SNP	C	T	T													cctaaggacaaatgggttggCatctccttctgctgaggctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51937040	T	T	51937040	3	4	9	1	0	0	0	0	1	0	0	0	7877	710	25	4	560	4	IQCF1	3	51937040	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74	51937040	146085390	4600	12751	78	2									
IQCF1	132141	broad.mit.edu	37	chr3	51937046	51937046	+	Missense_Mutation	SNP	C	A	A													gacaaatgggttggcatctcCttctgctgaggctcatcttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51937046	A	A	51937046	3	1	9	1	0	0	0	0	1	0	0	0	7877	680	24	2	566	2	IQCF1	3	51937046	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6	51937046	146085384	4601	12752	78	2									
RRP9	9136	broad.mit.edu	37	chr3	51971554	51971554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttataccaaaataccatgccCactcacctcttttgccacca	2	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51971554	A	A	51971554	1	1	9	0	1	0	0	0	0	0	0	0	13802	609	21	2		2	RRP9	3	51971554	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	34508	51971554	146050876	4602	12753											
RRP9	9136	broad.mit.edu	37	chr3	51971732	51971732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcctcctcaaatgcacGggcctcagccttctcctcct	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51971732	T	T	51971732	3	4	9	1	0	0	0	0	1	0	0	0	13802	1116	39	1	1174	1	RRP9	3	51971732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178	51971732	146050698	4603	12754											
PARP3	10039	broad.mit.edu	37	chr3	51978347	51978347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagcacagggcctggccCgacacacaggccagcaaatg	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51978347	A	A	51978347	1	1	9	0	1	0	0	0	0	0	0	0	11556	667	23	1		1	PARP3	3	51978347	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6615	51978347	146044083	4604	12755											
PARP3	10039	broad.mit.edu	37	chr3	51978482	51978482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactttgagaagaaatttcGggaaaagaccaagaacaact	10	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51978482	T	T	51978482	3	4	9	1	0	0	0	0	1	0	0	0	11556	1116	39	1	424	1	PARP3	3	51978482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	135	51978482	146043948	4605	12756											
PARP3	10039	broad.mit.edu	37	chr3	51978533	51978533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccactttgtgtctcaccCgggcaagtacacacttatcg	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51978533	A	A	51978533	3	1	9	1	0	0	0	0	1	0	0	0	11556	652	23	1	475	1	PARP3	3	51978533	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	51978533	146043897	4606	12757											
PARP3	10039	broad.mit.edu	37	chr3	51981893	51981893	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgacagtgtcattgccCgaggccacaccgagcctggt	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51981893	A	A	51981893	2	1	9	1	0	0	0	0	0	0	0	1	11556	644	23	1		1	PARP3	3	51981893	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3360	51981893	146040537	4607	12758											
PCBP4	57060	broad.mit.edu	37	chr3	51992957	51992957	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcttgctgccctggcgccCgatcacacagccaatcaact	8	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51992957	G	G	51992957	3	3	9	1	0	0	0	0	1	0	0	0	11597	652	23	4	447	4	PCBP4	3	51992957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11064	51992957	146029473	4608	12759											
PCBP4	57060	broad.mit.edu	37	chr3	51994908	51994908	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccggattcgctttacagtctCgcccttctgtgggaggtaca	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51994908	A	A	51994908	4	1	9	1	0	0	0	0	0	1	0	0	11597	893	31	3	1139	3	PCBP4	3	51994908	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1951	51994908	146027522	4609	12760											
PCBP4	57060	broad.mit.edu	37	chr3	51995031	51995031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctaggcacctaccttccCgatgatgctgcccacttcct	8	16	0	1	rs35444201		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51995031	A	A	51995031	3	1	9	1	0	0	0	0	1	0	0	0	11597	652	23	1	1155	1	PCBP4	3	51995031	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	51995031	146027399	4610	12761											
RPL29	6159	broad.mit.edu	37	chr3	52027914	52027914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagccccttggcaatacGggcacgagcacgcttcccaa	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52027914	T	T	52027914	3	4	9	1	0	0	0	0	1	0	0	0	13689	1116	39	1	152	1	RPL29	3	52027914	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32883	52027914	145994516	4611	12762											
ALAS1	211	broad.mit.edu	37	chr3	52245566	52245566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacatcatccctgtgcGggtaatggcctgtctctgat	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52245566	T	T	52245566	3	4	9	1	0	0	0	0	1	0	0	0	484	1130	39	1	1628	1	ALAS1	3	52245566	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	217652	52245566	145776864	4612	12763											
ALAS1	211	broad.mit.edu	37	chr3	52246367	52246368	+	Missense_Mutation	DNP	CG	AT	AT													tcaattaccctacggtgcccCggggagaagagctcctacgg					rs139914359		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	52246368	AT	AT	52246367	3	1	9	1	0	0	0	0	1	0	0	0	484	643	23	1	1727	1	ALAS1	3	52246367	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	801	52246367	145776063	4613	12764											
TLR9	54106	broad.mit.edu	37	chr3	52256890	52256890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacggtcaccaggttgttcCgtgacagatccaaggtgaag	13	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52256890	A	A	52256890	3	1	9	1	0	0	0	0	1	0	0	0	16081	652	23	1	1660	1	TLR9	3	52256890	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10523	52256890	145765540	4614	12765											
TWF2	11344	broad.mit.edu	37	chr3	52263102	52263102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgaggcgcttatggcccCgcttgccccctgggcccttg	14	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52263102	A	A	52263102	3	1	9	1	0	0	0	0	1	0	0	0	16908	652	23	1	55	1	TWF2	3	52263102	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6212	52263102	145759328	4615	12766											
TWF2	11344	broad.mit.edu	37	chr3	52269086	52269086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagccgcacagagccagccCgtgccttggcaaagaattcc	11	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52269086	A	A	52269086	3	1	9	1	0	0	0	0	1	0	0	0	16908	652	23	1	1019	1	TWF2	3	52269086	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5984	52269086	145753344	4616	12767											
WDR82	80335	broad.mit.edu	37	chr3	52293789	52293789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagacgaatgaagctgcCgttggtggaaatgaggatga	14	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52293789	A	A	52293789	3	1	9	1	0	0	0	0	1	0	0	0	17458	652	23	1	314	1	WDR82	3	52293789	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24703	52293789	145728641	4617	12768											
WDR82	80335	broad.mit.edu	37	chr3	52304794	52304794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatctgatgaggtccacacCatatttcttactgtacaggg	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52304794	A	A	52304794	3	1	9	1	0	0	0	0	1	0	0	0	17458	594	21	2	780	2	WDR82	3	52304794	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11005	52304794	145717636	4618	12769											
DNAH1	25981	broad.mit.edu	37	chr3	52393921	52393921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtttgacagtgcacccCatttctgcagctcagtgatc	9	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52393921	A	A	52393921	1	1	9	0	1	0	0	0	0	0	0	0	4637	609	21	2		2	DNAH1	3	52393921	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	89127	52393921	145628509	4619	12770											
DNAH1	25981	broad.mit.edu	37	chr3	52396965	52396965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagctgggggtgctctGggggtgagctctgtttgctg	19	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52396965	T	T	52396965	1	4	9	0	1	0	0	0	0	0	0	0	4637	1363	47	2		2	DNAH1	3	52396965	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3044	52396965	145625465	4620	12771											
DNAH1	25981	broad.mit.edu	37	chr3	52397025	52397025	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggcgctcttccgaccCgtggccatgatggttccaga	11	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52397025	A	A	52397025	2	1	9	1	0	0	0	0	0	0	0	1	4637	639	23	1		1	DNAH1	3	52397025	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	52397025	145625405	4621	12772											
DNAH1	25981	broad.mit.edu	37	chr3	52398996	52398996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcctggatgaggccatcCgcgaggcctgcaggaacagc	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52398996	A	A	52398996	3	1	9	1	0	0	0	0	1	0	0	0	4637	652	23	1	5609	1	DNAH1	3	52398996	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1971	52398996	145623434	4622	12773											
DNAH1	25981	broad.mit.edu	37	chr3	52427016	52427016	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcaacatcttcctctcGggcatcgccaactcagagag	7	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52427016	T	T	52427016	2	4	9	1	0	0	0	0	0	0	0	1	4637	1103	39	1		1	DNAH1	3	52427016	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28020	52427016	145595414	4623	12774											
DNAH1	25981	broad.mit.edu	37	chr3	52433114	52433114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcatcccagctgtcttctGgatcagtggattcttcttcc	9	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52433114	T	T	52433114	3	4	9	1	0	0	0	0	1	0	0	0	4637	1357	47	2	12636	2	DNAH1	3	52433114	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6098	52433114	145589316	4624	12775											
DNAH1	25981	broad.mit.edu	37	chr3	52433173	52433173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactctgcagaattttgccCgcaaatttgtcatctccatt	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52433173	A	A	52433173	3	1	9	1	0	0	0	0	1	0	0	0	4637	652	23	1	12695	1	DNAH1	3	52433173	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	52433173	145589257	4625	12776											
DNAH1	25981	broad.mit.edu	37	chr3	52433189	52433189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcccgcaaatttgtcatctCcattgacaccatctcctttg	5	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52433189	A	A	52433189	3	1	9	1	0	0	0	0	1	0	0	0	4637	855	30	3	12711	3	DNAH1	3	52433189	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	52433189	145589241	4626	12777											
BAP1	8314	broad.mit.edu	37	chr3	52441448	52441448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgggccttggccaactccGgggcattgccaatcgcatat	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52441448	T	T	52441448	3	4	9	1	0	0	0	0	1	0	0	0	1316	1116	39	1	1833	1	BAP1	3	52441448	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8259	52441448	145580982	4627	12778											
PHF7	51533	broad.mit.edu	37	chr3	52455038	52455038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgagaacatccagagccCgtgttgtagtcaagccatct	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52455038	A	A	52455038	3	1	9	1	0	0	0	0	1	0	0	0	11934	652	23	1	555	1	PHF7	3	52455038	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13590	52455038	145567392	4628	12779											
PHF7	51533	broad.mit.edu	37	chr3	52456822	52456822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcggatcccacggaaccCacagggactgctcctctctt	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52456822	A	A	52456822	3	1	9	1	0	0	0	0	1	0	0	0	11934	594	21	2	878	2	PHF7	3	52456822	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1784	52456822	145565608	4629	12780											
NISCH	11188	broad.mit.edu	37	chr3	52512496	52512496	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggagcataggcagcctccCgtgtctggagcacgtgtctc	13	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52512496	A	A	52512496	3	1	9	1	0	0	0	0	1	0	0	0	10527	652	23	1	1247	1	NISCH	3	52512496	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55674	52512496	145509934	4630	12781											
STAB1	23166	broad.mit.edu	37	chr3	52537484	52537484	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggatggtgtgtctgcccaaGgacccatgcactgacaacct	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52537484	C	C	52537484	3	2	9	1	0	0	0	0	1	0	0	0	15355	991	35	4	849	4	STAB1	3	52537484	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24988	52537484	145484946	4631	12782											
STAB1	23166	broad.mit.edu	37	chr3	52547914	52547914	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggtcttactgccccccCgaggggatgtgcccggtggg	15	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52547914	A	A	52547914	2	1	9	1	0	0	0	0	0	0	0	1	15355	644	23	1		1	STAB1	3	52547914	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10430	52547914	145474516	4632	12783											
STAB1	23166	broad.mit.edu	37	chr3	52553271	52553271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcatcagccccgtgcccCgcccccagggcagcatatac	9	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52553271	A	A	52553271	1	1	9	0	1	0	0	0	0	0	0	0	15355	667	23	1		1	STAB1	3	52553271	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5357	52553271	145469159	4633	12784											
STAB1	23166	broad.mit.edu	37	chr3	52554851	52554851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgctggcgcttctaccCgaagttctggacgtcccctc	11	16	2	0	rs138119721		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52554851	A	A	52554851	3	1	9	1	0	0	0	0	1	0	0	0	15355	652	23	1	5956	1	STAB1	3	52554851	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1580	52554851	145467579	4634	12785											
NT5DC2	64943	broad.mit.edu	37	chr3	52561339	52561339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgcccttttccaagcGggtgatccggtcccactgaa	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52561339	T	T	52561339	3	4	9	1	0	0	0	0	1	0	0	0	10786	1116	39	1	603	1	NT5DC2	3	52561339	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6488	52561339	145461091	4635	12786											
PBRM1	55193	broad.mit.edu	37	chr3	52637669	52637669	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgaaagaagaatctctcCatttttgcagagttcatcac	8	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52637669	A	A	52637669	4	1	9	1	0	0	0	0	0	1	0	0	11585	603	21	2	2309	2	PBRM1	3	52637669	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76330	52637669	145384761	4636	12787											
PBRM1	55193	broad.mit.edu	37	chr3	52677281	52677281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccggtaatacttgctagtGggatttctctcttcaccaag	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52677281	T	T	52677281	2	4	9	1	0	0	0	0	0	0	0	1	11585	1335	47	2		2	PBRM1	3	52677281	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39612	52677281	145345149	4637	12788											
PBRM1	55193	broad.mit.edu	37	chr3	52696092	52696092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagagggaatcacaagcaGgggccctctctgccttccaa	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52696092	T	T	52696092	1	4	9	0	1	0	0	0	0	0	0	0	11585	1015	35	2		2	PBRM1	3	52696092	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18811	52696092	145326338	4638	12789											
PBRM1	55193	broad.mit.edu	37	chr3	52713664	52713664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgacacagaatggtgccCatcatcaaagtccccgctga	9	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52713664	A	A	52713664	3	1	9	1	0	0	0	0	1	0	0	0	11585	594	21	2	4956	2	PBRM1	3	52713664	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17572	52713664	145308766	4639	12790											
NEK4	6787	broad.mit.edu	37	chr3	52780181	52780181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtgacatccactttccCaacaatgggatgagaaggca	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52780181	A	A	52780181	3	1	9	1	0	0	0	0	1	0	0	0	10421	594	21	2	830	2	NEK4	3	52780181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66517	52780181	145242249	4640	12791											
NEK4	6787	broad.mit.edu	37	chr3	52797416	52797416	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caccattaattcttgcatatGaatattacagaagccaccct	4	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52797416	T	T	52797416	1	4	9	0	1	0	0	0	0	0	0	0	10421	1305	45	3		3	NEK4	3	52797416	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17235	52797416	145225014	4641	12792											
NEK4	6787	broad.mit.edu	37	chr3	52797446	52797446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccaccctctttcacccCatctatttagcccagctatt	4	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52797446	A	A	52797446	1	1	9	0	1	0	0	0	0	0	0	0	10421	609	21	2		2	NEK4	3	52797446	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	52797446	145224984	4642	12793											
ITIH1	3697	broad.mit.edu	37	chr3	52816028	52816028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctacatccttactgaacGggcacttcaaggtgacctac	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52816028	T	T	52816028	3	4	9	1	0	0	0	0	1	0	0	0	7973	1116	39	1	786	1	ITIH1	3	52816028	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18582	52816028	145206402	4643	12794											
ITIH3	3699	broad.mit.edu	37	chr3	52835017	52835017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatccaagagaatgtgcGgaatgccatcgggggcaagt	13	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52835017	T	T	52835017	3	4	9	1	0	0	0	0	1	0	0	0	7975	1116	39	1	1280	1	ITIH3	3	52835017	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18989	52835017	145187413	4644	12795											
ITIH4	3700	broad.mit.edu	37	chr3	52848355	52848355	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgagcagcaggagaccCgtcttgtccatggtcatctt	10	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52848355	A	A	52848355	2	1	9	1	0	0	0	0	0	0	0	1	7976	639	23	1		1	ITIH4	3	52848355	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13338	52848355	145174075	4645	12796											
ITIH4	3700	broad.mit.edu	37	chr3	52850879	52850879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggtcaacccctgccccGggctccagcctgggccttac	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52850879	T	T	52850879	1	4	9	0	1	0	0	0	0	0	0	0	7976	1131	39	1		1	ITIH4	3	52850879	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2524	52850879	145171551	4646	12797											
ITIH4	3700	broad.mit.edu	37	chr3	52850902	52850902	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcctgggccttacccGggcatcactgagaatagcgt	11	14	1	1	rs144868524		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52850902	T	T	52850902	2	4	9	1	0	0	0	0	0	0	0	1	7976	1103	39	1		1	ITIH4	3	52850902	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	52850902	145171528	4647	12798											
ITIH4	3700	broad.mit.edu	37	chr3	52854044	52854044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtttgcatcttgcaccCaccttcctgtggccccactt	8	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52854044	A	A	52854044	1	1	9	0	1	0	0	0	0	0	0	0	7976	609	21	2		2	ITIH4	3	52854044	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3142	52854044	145168386	4648	12799											
ITIH4	3700	broad.mit.edu	37	chr3	52854060	52854060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccaccttcctgtggcccCacttggatggggactgtatt	10	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52854060	A	A	52854060	1	1	9	0	1	0	0	0	0	0	0	0	7976	609	21	2		2	ITIH4	3	52854060	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	52854060	145168370	4649	12800											
TMEM110	375346	broad.mit.edu	37	chr3	52878928	52878928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtaaagagcgcactgccCgacccaggctccacactgca	10	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52878928	A	A	52878928	3	1	9	1	0	0	0	0	1	0	0	0	16150	652	23	1	443	1	TMEM110	3	52878928	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24868	52878928	145143502	4650	12801											
RFT1	91869	broad.mit.edu	37	chr3	53145850	53145850	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaccgtctacttaccttcTgtcaaaatctgtttcaagaa	6	10	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53145850	C	C	53145850	2	2	9	1	0	0	0	0	0	0	0	1	13365	1567	55	5		5	RFT1	3	53145850	Silent	SNP	T	TCGA-05-4396-01A-21D-1855-08	266922	53145850	144876580	4651	12802											
RFT1	91869	broad.mit.edu	37	chr3	53156427	53156427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgcttgtgccaagaccCaaaagggctctcctagaagc	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53156427	A	A	53156427	3	1	9	1	0	0	0	0	1	0	0	0	13365	595	21	2	1246	2	RFT1	3	53156427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10577	53156427	144866003	4652	12803											
PRKCD	5580	broad.mit.edu	37	chr3	53220689	53220689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacatccaggacaaaggcCgctttgaactctaccgtgcc	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53220689	A	A	53220689	3	1	9	1	0	0	0	0	1	0	0	0	12615	652	23	1	1376	1	PRKCD	3	53220689	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64262	53220689	144801741	4653	12804											
PRKCD	5580	broad.mit.edu	37	chr3	53223880	53223880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaaccagggtccctgctGggttgcagctctttgaaagg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53223880	T	T	53223880	1	4	9	0	1	0	0	0	0	0	0	0	12615	1363	47	2		2	PRKCD	3	53223880	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3191	53223880	144798550	4654	12805											
DCP1A	55802	broad.mit.edu	37	chr3	53326245	53326245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaccattgcacctttccCaagtggttgtgtctgtattt	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53326245	A	A	53326245	3	1	9	1	0	0	0	0	1	0	0	0	4331	594	21	2	527	2	DCP1A	3	53326245	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102365	53326245	144696185	4655	12806											
CACNA1D	776	broad.mit.edu	37	chr3	53760960	53760960	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatggcatcatggcttacGggggcccatcctcttcagga	12	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53760960	T	T	53760960	3	4	9	1	0	0	0	0	1	0	0	0	2567	1116	39	1	2385	1	CACNA1D	3	53760960	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	434715	53760960	144261470	4656	12807											
CACNA1D	776	broad.mit.edu	37	chr3	53774312	53774312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtgccttgcagatactGggttactttgactatgcctt	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53774312	T	T	53774312	2	4	9	1	0	0	0	0	0	0	0	1	2567	1335	47	2		2	CACNA1D	3	53774312	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13352	53774312	144248118	4657	12808											
CACNA1D	776	broad.mit.edu	37	chr3	53785829	53785829	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgcggagatacatcccCaaaaacccctaccagtacaa	5	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53785829	A	A	53785829	2	1	9	1	0	0	0	0	0	0	0	1	2567	581	21	2		2	CACNA1D	3	53785829	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11517	53785829	144236601	4658	12809											
CACNA1D	776	broad.mit.edu	37	chr3	53810682	53810682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttcgactatctgacccGggactggtctattttggggc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53810682	T	T	53810682	3	4	9	1	0	0	0	0	1	0	0	0	2567	1116	39	1	4729	1	CACNA1D	3	53810682	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24853	53810682	144211748	4659	12810											
CACNA1D	776	broad.mit.edu	37	chr3	53815623	53815623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagctaatgaagaacttcGggctgtgataaagaaaattt	10	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53815623	T	T	53815623	3	4	9	1	0	0	0	0	1	0	0	0	2567	1116	39	1	5047	1	CACNA1D	3	53815623	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4941	53815623	144206807	4660	12811											
CACNA1D	776	broad.mit.edu	37	chr3	53836178	53836178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctttcctggatagaaccCgctattatgaaacttacatt	6	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53836178	A	A	53836178	3	1	9	1	0	0	0	0	1	0	0	0	2567	652	23	1	5755	1	CACNA1D	3	53836178	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20555	53836178	144186252	4661	12812											
CHDH	55349	broad.mit.edu	37	chr3	53854643	53854643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggccaacccctgatacGggaaggagtggtttagaaaa	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53854643	T	T	53854643	1	4	9	0	1	0	0	0	0	0	0	0	3364	1131	39	1		1	CHDH	3	53854643	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18465	53854643	144167787	4662	12813											
ACTR8	93973	broad.mit.edu	37	chr3	53902765	53902765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccacacaaacgcagccCgctctcgtaacatgcggaca	7	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53902765	A	A	53902765	3	1	9	1	0	0	0	0	1	0	0	0	217	652	23	1	22	1	ACTR8	3	53902765	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48122	53902765	144119665	4663	12814											
ACTR8	93973	broad.mit.edu	37	chr3	53912391	53912391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttaatcgaacctgttcaGgggacacaggaatgcgtctt	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53912391	T	T	53912391	3	4	9	1	0	0	0	0	1	0	0	0	217	1000	35	2	1520	2	ACTR8	3	53912391	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9626	53912391	144110039	4664	12815											
CACNA2D3	55799	broad.mit.edu	37	chr3	54850941	54850941	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtcacccccagaactcacGagtcatgcatgcctccatgg	8	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54850941	T	T	54850941	1	4	9	0	1	0	0	0	0	0	0	0	2576	1073	37	3		3	CACNA2D3	3	54850941	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	938550	54850941	143171489	4665	12816											
CACNA2D3	55799	broad.mit.edu	37	chr3	54930708	54930708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacctgatgaaggctgtcGgggtgctccaggcccacctt	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54930708	T	T	54930708	1	4	9	0	1	0	0	0	0	0	0	0	2576	1131	39	1		1	CACNA2D3	3	54930708	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	79767	54930708	143091722	4666	12817											
ERC2	26059	broad.mit.edu	37	chr3	55922459	55922459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtttcctcctctcaatcCggaggttggccaagtgcgct	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55922459	A	A	55922459	3	1	9	1	0	0	0	0	1	0	0	0	5253	652	23	1	367	1	ERC2	3	55922459	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	991751	55922459	142099971	4667	12818											
ERC2	26059	broad.mit.edu	37	chr3	55922488	55922488	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaagtgcgcttctttttcGgccagggactgttgtgtgga	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55922488	T	T	55922488	2	4	9	1	0	0	0	0	0	0	0	1	5253	1103	39	1		1	ERC2	3	55922488	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29	55922488	142099942	4668	12819											
ERC2	26059	broad.mit.edu	37	chr3	56044618	56044618	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgctcaattattctctcCtgtaaggcaattaacaaaaa	5	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56044618	A	A	56044618	5	1	9	1	0	0	0	0	0	0	1	0	5253	695	24	2	1120	2	ERC2	3	56044618	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	122130	56044618	141977812	4669	12820											
ERC2	26059	broad.mit.edu	37	chr3	56330220	56330220	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttaattgactcatctcGggcattgagggtttgtttct	9	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56330220	T	T	56330220	2	4	9	1	0	0	0	0	0	0	0	1	5253	1124	39	1		1	ERC2	3	56330220	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	285602	56330220	141692210	4670	12821											
ERC2	26059	broad.mit.edu	37	chr3	56468669	56468669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggatgagccagtcagccCaccatgttgatctgtgtatg	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468669	A	A	56468669	3	1	9	1	0	0	0	0	1	0	0	0	5253	594	21	2	2560	2	ERC2	3	56468669	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138449	56468669	141553761	4671	12822											
CCDC66	285331	broad.mit.edu	37	chr3	56627091	56627091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagcaaatagaagatgacCgtcaaagaaaaatagaggaa	9	4	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56627091	A	A	56627091	3	1	9	1	0	0	0	0	1	0	0	0	2866	652	23	1	1060	1	CCDC66	3	56627091	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158422	56627091	141395339	4672	12823											
ARHGEF3	50650	broad.mit.edu	37	chr3	56766409	56766409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcattgtgggtgacggctCgagtgatcacaagcacttct	12	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56766409	A	A	56766409	3	1	9	1	0	0	0	0	1	0	0	0	906	884	31	3	503	3	ARHGEF3	3	56766409	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	139318	56766409	141256021	4673	12824											
ARHGEF3	50650	broad.mit.edu	37	chr3	56779424	56779424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgatcttgctttttgtGgtccagcagagctttggcgg	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56779424	T	T	56779424	3	4	9	1	0	0	0	0	1	0	0	0	906	1348	47	2	917	2	ARHGEF3	3	56779424	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13015	56779424	141243006	4674	12825											
ARHGEF3	50650	broad.mit.edu	37	chr3	56807783	56807783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcgtggccttcacgggcGggatgaggtttgctagcgac	17	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56807783	T	T	56807783	3	4	9	1	0	0	0	0	1	0	0	0	906	1116	39	1	1458	1	ARHGEF3	3	56807783	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28359	56807783	141214647	4675	12826											
IL17RD	54756	broad.mit.edu	37	chr3	57143568	57143568	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggccatactcacctcGggttctaaagaagaaagggt	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57143568	T	T	57143568	2	4	9	1	0	0	0	0	0	0	0	1	7712	1124	39	1		1	IL17RD	3	57143568	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	335785	57143568	140878862	4676	12827											
HESX1	8820	broad.mit.edu	37	chr3	57233913	57233913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgagggtttgttttcccCgagctgagcgccttcctgaa	12	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57233913	A	A	57233913	3	1	9	1	0	0	0	0	1	0	0	0	7139	652	23	1	539	1	HESX1	3	57233913	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90345	57233913	140788517	4677	12828											
APPL1	26060	broad.mit.edu	37	chr3	57269598	57269598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattgttttatacagacaaGgtctttactaggtgtatttg	8	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57269598	T	T	57269598	3	4	9	1	0	0	0	0	1	0	0	0	819	1000	35	2	65	2	APPL1	3	57269598	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35685	57269598	140752832	4678	12829											
APPL1	26060	broad.mit.edu	37	chr3	57269687	57269687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgcatcggatttatgatGcacaggtaaaacactaagga	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57269687	T	T	57269687	3	4	9	1	0	0	0	0	1	0	0	0	819	1319	46	3	154	3	APPL1	3	57269687	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	89	57269687	140752743	4679	12830											
APPL1	26060	broad.mit.edu	37	chr3	57283464	57283464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatttaatgagtcaggccCgtggggatgtagcaggaggc	16	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57283464	A	A	57283464	3	1	9	1	0	0	0	0	1	0	0	0	819	652	23	1	982	1	APPL1	3	57283464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13777	57283464	140738966	4680	12831											
PDE12	201626	broad.mit.edu	37	chr3	57542676	57542676	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctcgaatttggggatccCgccagctcccttttccgctg	10	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57542676	A	A	57542676	2	1	9	1	0	0	0	0	0	0	0	1	11726	639	23	1		1	PDE12	3	57542676	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	259212	57542676	140479754	4681	12832											
ARF4	378	broad.mit.edu	37	chr3	57570141	57570141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtggtgactatctcccCtaacttcagtttatacagaa	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57570141	A	A	57570141	3	1	9	1	0	0	0	0	1	0	0	0	848	681	24	2	444	2	ARF4	3	57570141	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27465	57570141	140452289	4682	12833											
ARF4	378	broad.mit.edu	37	chr3	57570184	57570184	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcttgccagcagcatcCaatccaactagaagaagaca	8	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57570184	A	A	57570184	3	1	9	1	0	0	0	0	1	0	0	0	848	593	21	2	487	2	ARF4	3	57570184	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	57570184	140452246	4683	12834											
FAM116A	201627	broad.mit.edu	37	chr3	57614017	57614017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatggcatctatgtgtgtcCgtaacttttccatagtgtca	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57614017	A	A	57614017	3	1	9	1	0	0	0	0	1	0	0	0	5453	652	23	1	79	1	FAM116A	3	57614017	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43833	57614017	140408413	4684	12835											
SLMAP	7871	broad.mit.edu	37	chr3	57843529	57843529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggctactagccatcaccCaagaggcttcagataccagt	9	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57843529	A	A	57843529	3	1	9	1	0	0	0	0	1	0	0	0	14863	595	21	2	611	2	SLMAP	3	57843529	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	229512	57843529	140178901	4685	12836											
SLMAP	7871	broad.mit.edu	37	chr3	57843782	57843782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgactttataattactcGggttttacttacatttaatt	5	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57843782	T	T	57843782	1	4	9	0	1	0	0	0	0	0	0	0	14863	1131	39	1		1	SLMAP	3	57843782	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	253	57843782	140178648	4686	12837											
SLMAP	7871	broad.mit.edu	37	chr3	57847709	57847709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactgaagatgaatgtaccCatctgaaagaaatgaatgaa	8	5	1	7			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57847709	A	A	57847709	3	1	9	1	0	0	0	0	1	0	0	0	14863	594	21	2	896	2	SLMAP	3	57847709	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3927	57847709	140174721	4687	12838											
SLMAP	7871	broad.mit.edu	37	chr3	57857386	57857386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgctttcaaagagtggcGgggactgcacttttattcat	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57857386	T	T	57857386	3	4	9	1	0	0	0	0	1	0	0	0	14863	1116	39	1	1201	1	SLMAP	3	57857386	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9677	57857386	140165044	4688	12839											
SLMAP	7871	broad.mit.edu	37	chr3	57894891	57894891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaaggtatggaagacccCaaggctctttgagattgtta	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57894891	A	A	57894891	1	1	9	0	1	0	0	0	0	0	0	0	14863	609	21	2		2	SLMAP	3	57894891	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	37505	57894891	140127539	4689	12840											
FLNB	2317	broad.mit.edu	37	chr3	58090837	58090837	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaagttggccctgaagcGggtatgcagaaagtccgtgc	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58090837	T	T	58090837	2	4	9	1	0	0	0	0	0	0	0	1	5992	1103	39	1		1	FLNB	3	58090837	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	195946	58090837	139931593	4690	12841											
FLNB	2317	broad.mit.edu	37	chr3	58095312	58095312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctctaggtcaacatcGggcaaggtagccatcctcag	10	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58095312	T	T	58095312	3	4	9	1	0	0	0	0	1	0	0	0	5992	1116	39	1	2267	1	FLNB	3	58095312	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4475	58095312	139927118	4691	12842											
FLNB	2317	broad.mit.edu	37	chr3	58095769	58095769	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcattaagtgtgatgccCgggtgttaagtgaagatgag	15	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58095769	A	A	58095769	2	1	9	1	0	0	0	0	0	0	0	1	5992	643	23	1		1	FLNB	3	58095769	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	457	58095769	139926661	4692	12843											
FLNB	2317	broad.mit.edu	37	chr3	58097813	58097813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgttgaacctgtctgacGggttctcaaagtgaaactac	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58097813	T	T	58097813	1	4	9	0	1	0	0	0	0	0	0	0	5992	1131	39	1		1	FLNB	3	58097813	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2044	58097813	139924617	4693	12844											
FLNB	2317	broad.mit.edu	37	chr3	58106999	58106999	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaggatcaggagttcacCgttgataccaggggggcagg	18	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58106999	A	A	58106999	2	1	9	1	0	0	0	0	0	0	0	1	5992	639	23	1		1	FLNB	3	58106999	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9186	58106999	139915431	4694	12845											
FLNB	2317	broad.mit.edu	37	chr3	58107026	58107026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggggggcaggaggccaGgggaagctggacgtgacaat	19	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58107026	T	T	58107026	3	4	9	1	0	0	0	0	1	0	0	0	5992	991	35	2	3000	2	FLNB	3	58107026	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	58107026	139915404	4695	12846											
FLNB	2317	broad.mit.edu	37	chr3	58107130	58107130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggccaagttcatccctcGggaggaggggctgtatgctg	15	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58107130	T	T	58107130	3	4	9	1	0	0	0	0	1	0	0	0	5992	1116	39	1	3104	1	FLNB	3	58107130	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	104	58107130	139915300	4696	12847											
FLNB	2317	broad.mit.edu	37	chr3	58109006	58109006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaccttcccacaaaacccGgggagtacttcgtcaacatc	6	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58109006	T	T	58109006	3	4	9	1	0	0	0	0	1	0	0	0	5992	1116	39	1	3395	1	FLNB	3	58109006	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1876	58109006	139913424	4697	12848											
FLNB	2317	broad.mit.edu	37	chr3	58109059	58109059	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccacatacctgggtctccCttcaaagctgacattgaaat	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58109059	A	A	58109059	2	1	9	1	0	0	0	0	0	0	0	1	5992	668	24	2		2	FLNB	3	58109059	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	58109059	139913371	4698	12849											
FLNB	2317	broad.mit.edu	37	chr3	58109110	58109110	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctaaagtcgtggcatcGgggccaggtctcgagcacgg	14	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58109110	T	T	58109110	2	4	9	1	0	0	0	0	0	0	0	1	5992	1103	39	1		1	FLNB	3	58109110	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	58109110	139913320	4699	12850											
FLNB	2317	broad.mit.edu	37	chr3	58111262	58111262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatcatttttcacaaataGgggatttgtatgcaaatatg	8	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58111262	T	T	58111262	1	4	9	0	1	0	0	0	0	0	0	0	5992	1015	35	2		2	FLNB	3	58111262	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2152	58111262	139911168	4700	12851											
FLNB	2317	broad.mit.edu	37	chr3	58111447	58111447	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcctttaccaacaagccCaatgtcttcaccgtggttac	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58111447	A	A	58111447	2	1	9	1	0	0	0	0	0	0	0	1	5992	581	21	2		2	FLNB	3	58111447	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	185	58111447	139910983	4701	12852											
FLNB	2317	broad.mit.edu	37	chr3	58111459	58111459	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagcccaatgtcttcacCgtggttaccaggtaggcaag	10	11	2	0	rs145585541		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58111459	A	A	58111459	2	1	9	1	0	0	0	0	0	0	0	1	5992	639	23	1		1	FLNB	3	58111459	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	58111459	139910971	4702	12853											
FLNB	2317	broad.mit.edu	37	chr3	58124190	58124190	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacacagctgccaagccGggcacatatgtgatctatgt	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58124190	T	T	58124190	2	4	9	1	0	0	0	0	0	0	0	1	5992	1103	39	1		1	FLNB	3	58124190	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12731	58124190	139898240	4703	12854											
FLNB	2317	broad.mit.edu	37	chr3	58131645	58131645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgtccttcgtaaaccCagagagcccactccagttct	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58131645	A	A	58131645	1	1	9	0	1	0	0	0	0	0	0	0	5992	609	21	2		2	FLNB	3	58131645	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7455	58131645	139890785	4704	12855											
FLNB	2317	broad.mit.edu	37	chr3	58145286	58145286	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattaaattctcaggaatcGggattaaaagttaaccagcc	8	7	1	0	rs141740204	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58145286	T	T	58145286	2	4	9	1	0	0	0	0	0	0	0	1	5992	1103	39	1		1	FLNB	3	58145286	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13641	58145286	139877144	4705	12856											
DNASE1L3	1776	broad.mit.edu	37	chr3	58186781	58186781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccaactcatcgatctcCttaacggatgtctctggggt	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58186781	A	A	58186781	3	1	9	1	0	0	0	0	1	0	0	0	4703	680	24	2	444	2	DNASE1L3	3	58186781	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41495	58186781	139835649	4706	12857											
ABHD6	57406	broad.mit.edu	37	chr3	58253043	58253043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccacggattctctgccCacaaggatatgtggctcagt	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58253043	A	A	58253043	3	1	9	1	0	0	0	0	1	0	0	0	86	594	21	2	253	2	ABHD6	3	58253043	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66262	58253043	139769387	4707	12858											
ABHD6	57406	broad.mit.edu	37	chr3	58256778	58256778	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgtctccagcctgtgtctCgtgtgtcctgctggtaagtt	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58256778	A	A	58256778	2	1	9	1	0	0	0	0	0	0	0	1	86	871	31	3		3	ABHD6	3	58256778	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3735	58256778	139765652	4708	12859											
PXK	54899	broad.mit.edu	37	chr3	58382835	58382835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccaatgtgatgctcgatGgggacacttgccggctgctg	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58382835	T	T	58382835	3	4	9	1	0	0	0	0	1	0	0	0	12957	1348	47	2	930	2	PXK	3	58382835	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126057	58382835	139639595	4709	12860											
PXK	54899	broad.mit.edu	37	chr3	58382895	58382895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctgccttccttctacCgatcttatttttcacaattc	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58382895	A	A	58382895	2	1	9	1	0	0	0	0	0	0	0	1	12957	644	23	1		1	PXK	3	58382895	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	58382895	139639535	4710	12861											
PXK	54899	broad.mit.edu	37	chr3	58383448	58383448	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccccgtccatggctgtGggtcagtatggggttgggaa	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58383448	T	T	58383448	2	4	9	1	0	0	0	0	0	0	0	1	12957	1362	47	2		2	PXK	3	58383448	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	553	58383448	139638982	4711	12862											
ACOX2	8309	broad.mit.edu	37	chr3	58502943	58502943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccactcaccggatcaggcGgagcaggtccaggtaggctg	15	12	2	0	rs143133121	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58502943	T	T	58502943	3	4	9	1	0	0	0	0	1	0	0	0	159	1116	39	1	217	1	ACOX2	3	58502943	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119495	58502943	139519487	4712	12863											
FAM3D	131177	broad.mit.edu	37	chr3	58625897	58625897	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtcccagcacagctccCgtggttcctaggggttaaga	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58625897	A	A	58625897	2	1	9	1	0	0	0	0	0	0	0	1	5610	639	23	1		1	FAM3D	3	58625897	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	122954	58625897	139396533	4713	12864											
FAM3D	131177	broad.mit.edu	37	chr3	58629484	58629484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatatgacagtcggtccCgagtgtggaatgaacactct	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58629484	A	A	58629484	1	1	9	0	1	0	0	0	0	0	0	0	5610	667	23	1		1	FAM3D	3	58629484	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3587	58629484	139392946	4714	12865											
PTPRG	5793	broad.mit.edu	37	chr3	62118318	62118318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggatcctattatccacGggttgaagggtgtcgtacat	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62118318	T	T	62118318	3	4	9	1	0	0	0	0	1	0	0	0	12910	1116	39	1	680	1	PTPRG	3	62118318	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3488834	62118318	135904112	4715	12866											
PTPRG	5793	broad.mit.edu	37	chr3	62153674	62153674	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttattccatcttcaccacGgagcagcaagaccatgtcaa	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62153674	T	T	62153674	2	4	9	1	0	0	0	0	0	0	0	1	12910	1103	39	1		1	PTPRG	3	62153674	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35356	62153674	135868756	4716	12867											
FEZF2	55079	broad.mit.edu	37	chr3	62356018	62356018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtggttcttgtagttccCtacaacagatcaagaacaaa	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62356018	A	A	62356018	1	1	9	0	1	0	0	0	0	0	0	0	5883	695	24	2		2	FEZF2	3	62356018	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	202344	62356018	135666412	4717	12868											
CADPS	8618	broad.mit.edu	37	chr3	62451042	62451042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagaagctctttacttacGgtaaatgacagaaaagaaga	8	5	1	5	rs62243467	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62451042	T	T	62451042	2	4	9	1	0	0	0	0	0	0	0	1	2596	1130	39	1		1	CADPS	3	62451042	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	95024	62451042	135571388	4718	12869											
CADPS	8618	broad.mit.edu	37	chr3	62477974	62477974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatacatacagtcagtacGgagaaaatcattcagcagct	8	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62477974	T	T	62477974	3	4	9	1	0	0	0	0	1	0	0	0	2596	1116	39	1	1230	1	CADPS	3	62477974	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26932	62477974	135544456	4719	12870											
CADPS	8618	broad.mit.edu	37	chr3	62543086	62543086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcggtgggtacctggctGggggtcggtgtaatccacag	19	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62543086	T	T	62543086	3	4	9	1	0	0	0	0	1	0	0	0	2596	1357	47	2	2471	2	CADPS	3	62543086	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65112	62543086	135479344	4720	12871											
ATXN7	6314	broad.mit.edu	37	chr3	63973750	63973750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagacacattccttaaccCagcgcagggctgtccagggt	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63973750	A	A	63973750	3	1	9	1	0	0	0	0	1	0	0	0	1219	595	21	2	1205	2	ATXN7	3	63973750	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1430664	63973750	134048680	4721	12872											
ATXN7	6314	broad.mit.edu	37	chr3	63973800	63973800	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatttgatgtgttattagcCgagcacaaaaacaaaaccag	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63973800	A	A	63973800	2	1	9	1	0	0	0	0	0	0	0	1	1219	639	23	1		1	ATXN7	3	63973800	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	63973800	134048630	4722	12873											
ATXN7	6314	broad.mit.edu	37	chr3	63973887	63973887	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcagggacccgcatccCgcccctcctagaacgtcaca	7	20	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63973887	A	A	63973887	2	1	9	1	0	0	0	0	0	0	0	1	1219	639	23	1		1	ATXN7	3	63973887	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	63973887	134048543	4723	12874											
ADAMTS9	56999	broad.mit.edu	37	chr3	64527079	64527079	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggtcagagtgcatcccCgcacagaatatctgaaagac	12	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64527079	A	A	64527079	2	1	9	1	0	0	0	0	0	0	0	1	273	639	23	1		1	ADAMTS9	3	64527079	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	553192	64527079	133495351	4724	12875											
ADAMTS9	56999	broad.mit.edu	37	chr3	64579971	64579971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactccatgcagcgtcgtgtGgacaagcatgtgtgttacac	11	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64579971	T	T	64579971	3	4	9	1	0	0	0	0	1	0	0	0	273	1348	47	2	1536	2	ADAMTS9	3	64579971	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52892	64579971	133442459	4725	12876											
ADAMTS9	56999	broad.mit.edu	37	chr3	64580058	64580058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccgttcaccgttggacCgctgacagaccaccagtctt	9	14	2	2	rs139134722		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64580058	A	A	64580058	3	1	9	1	0	0	0	0	1	0	0	0	273	652	23	1	1623	1	ADAMTS9	3	64580058	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	64580058	133442372	4726	12877											
ADAMTS9	56999	broad.mit.edu	37	chr3	64601695	64601695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccctgagcatttttcacGgttgcttggtttgggatggc	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64601695	T	T	64601695	3	4	9	1	0	0	0	0	1	0	0	0	273	1116	39	1	2922	1	ADAMTS9	3	64601695	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21637	64601695	133420735	4727	12878											
ADAMTS9	56999	broad.mit.edu	37	chr3	64619394	64619394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccactgtatttagggaccCagcgcacattgggaagcaga	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64619394	A	A	64619394	3	1	9	1	0	0	0	0	1	0	0	0	273	595	21	2	3897	2	ADAMTS9	3	64619394	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17699	64619394	133403036	4728	12879											
ADAMTS9	56999	broad.mit.edu	37	chr3	64619437	64619437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgatgttaaaatgcttccCgtcaaagtgagcacactgtt	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64619437	A	A	64619437	3	1	9	1	0	0	0	0	1	0	0	0	273	652	23	1	3940	1	ADAMTS9	3	64619437	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	64619437	133402993	4729	12880											
ADAMTS9	56999	broad.mit.edu	37	chr3	64644303	64644303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacgttttgtccttctgtGggtcctcttttctcttgtgt	8	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64644303	T	T	64644303	3	4	9	1	0	0	0	0	1	0	0	0	273	1348	47	2	5107	2	ADAMTS9	3	64644303	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24866	64644303	133378127	4730	12881											
MAGI1	9223	broad.mit.edu	37	chr3	65342025	65342025	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttagaacctttgacacGgtaaaggttggaatgtgact	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65342025	T	T	65342025	1	4	9	0	1	0	0	0	0	0	0	0	9282	1131	39	1		1	MAGI1	3	65342025	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	697722	65342025	132680405	4731	12882											
MAGI1	9223	broad.mit.edu	37	chr3	65342361	65342361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggagccgtctctcctgcGggtgggtgaccgctctcgcc	17	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65342361	T	T	65342361	3	4	9	1	0	0	0	0	1	0	0	0	9282	1116	39	1	311	1	MAGI1	3	65342361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	336	65342361	132680069	4732	12883											
MAGI1	9223	broad.mit.edu	37	chr3	65346900	65346900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtactgagccgtctcccCgcttcagaaacagacgaact	9	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65346900	A	A	65346900	3	1	9	1	0	0	0	0	1	0	0	0	9282	652	23	1	931	1	MAGI1	3	65346900	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4539	65346900	132675530	4733	12884											
MAGI1	9223	broad.mit.edu	37	chr3	65428509	65428509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtcttcaatcttttccCaaccagcaggcagttctgaa	8	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65428509	A	A	65428509	3	1	9	1	0	0	0	0	1	0	0	0	9282	595	21	2	3592	2	MAGI1	3	65428509	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81609	65428509	132593921	4734	12885											
MAGI1	9223	broad.mit.edu	37	chr3	65433719	65433719	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcactgtccagctcctcGgtgtgtaccccttcttctcc	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65433719	T	T	65433719	2	4	9	1	0	0	0	0	0	0	0	1	9282	1103	39	1		1	MAGI1	3	65433719	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5210	65433719	132588711	4735	12886											
MAGI1	9223	broad.mit.edu	37	chr3	65479298	65479298	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccttctctgggagatcGggttgtgcctgtagcagaaa	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65479298	T	T	65479298	2	4	9	1	0	0	0	0	0	0	0	1	9282	1124	39	1		1	MAGI1	3	65479298	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45579	65479298	132543132	4736	12887											
SLC25A26	115286	broad.mit.edu	37	chr3	66428156	66428156	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatggcagccatcagtctGggaggtttcatctttctggg	13	9	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66428156	T	T	66428156	2	4	9	1	0	0	0	0	0	0	0	1	14603	1335	47	2		2	SLC25A26	3	66428156	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	948858	66428156	131594274	4737	12888											
LRIG1	26018	broad.mit.edu	37	chr3	66430973	66430973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttaagcagctcccaaccCacctgttagaagacagtcaa	7	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66430973	A	A	66430973	1	1	9	0	1	0	0	0	0	0	0	0	9031	609	21	2		2	LRIG1	3	66430973	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2817	66430973	131591457	4738	12889											
LRIG1	26018	broad.mit.edu	37	chr3	66433623	66433623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcacaggtatatcggccCgcatcctctgccaccacgtt	7	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66433623	A	A	66433623	2	1	9	1	0	0	0	0	0	0	0	1	9031	639	23	1		1	LRIG1	3	66433623	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2650	66433623	131588807	4739	12890											
LRIG1	26018	broad.mit.edu	37	chr3	66434609	66434609	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggcaatctgagggtttGggtgacctgtggcagcacat	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66434609	T	T	66434609	3	4	9	1	0	0	0	0	1	0	0	0	9031	1348	47	2	1428	2	LRIG1	3	66434609	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	986	66434609	131587821	4740	12891											
LRIG1	26018	broad.mit.edu	37	chr3	66467592	66467592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtggaaagcaggtgttcCgcacttccgtgatgttgttc	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66467592	A	A	66467592	3	1	9	1	0	0	0	0	1	0	0	0	9031	652	23	1	2881	1	LRIG1	3	66467592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32983	66467592	131554838	4741	12892											
KBTBD8	84541	broad.mit.edu	37	chr3	67049524	67049524	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaacaatgtacgatgaaGgacagttgacagacattgta	9	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67049524	T	T	67049524	4	4	9	1	0	0	0	0	0	1	0	0	8069	1001	35	2	142	2	KBTBD8	3	67049524	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	581932	67049524	130972906	4742	12893											
KBTBD8	84541	broad.mit.edu	37	chr3	67053653	67053653	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcggccttacagaaagtactCaaaaagaagttcgaatagtt	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67053653	A	A	67053653	3	1	9	1	0	0	0	0	1	0	0	0	8069	827	29	3	272	3	KBTBD8	3	67053653	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4129	67053653	130968777	4743	12894											
KBTBD8	84541	broad.mit.edu	37	chr3	67053837	67053837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgatcagtcatttggaccCacagaattctattggggtct	9	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67053837	A	A	67053837	3	1	9	1	0	0	0	0	1	0	0	0	8069	594	21	2	456	2	KBTBD8	3	67053837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	184	67053837	130968593	4744	12895											
SUCLG2	8801	broad.mit.edu	37	chr3	67451196	67451196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccttgagttctagctccCggcaggctttggtgatccca	11	13	1	2	rs12492080		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67451196	A	A	67451196	3	1	9	1	0	0	0	0	1	0	0	0	15483	652	23	1	308	1	SUCLG2	3	67451196	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	397359	67451196	130571234	4745	12896											
SUCLG2	8801	broad.mit.edu	37	chr3	67659948	67659948	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctttgaactctcactcCgttgtcagacatcagtttct	6	11	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67659948	A	A	67659948	4	1	9	1	0	0	0	0	0	1	0	0	15483	661	23	1	1325	1	SUCLG2	3	67659948	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	208752	67659948	130362482	4746	12897											
FAM19A4	151647	broad.mit.edu	37	chr3	68802081	68802081	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagcaagagcacttgacCgtttgtgaccgctcttctat	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68802081	A	A	68802081	2	1	9	1	0	0	0	0	0	0	0	1	5581	639	23	1		1	FAM19A4	3	68802081	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1142133	68802081	129220349	4747	12898											
TMF1	7110	broad.mit.edu	37	chr3	69073388	69073388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatcttttttaatactccCagtaatataaaaatatttaa	1	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69073388	A	A	69073388	1	1	9	0	1	0	0	0	0	0	0	0	16351	609	21	2		2	TMF1	3	69073388	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	271307	69073388	128949042	4748	12899											
TMF1	7110	broad.mit.edu	37	chr3	69084264	69084264	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcaagcctaaggtccccCacctgtaggaggagaaacaa	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69084264	A	A	69084264	2	1	9	1	0	0	0	0	0	0	0	1	16351	581	21	2		2	TMF1	3	69084264	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10876	69084264	128938166	4749	12900											
UBA3	9039	broad.mit.edu	37	chr3	69105054	69105054	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcttcaatagaggttacCgactagaaaacaaaattact	6	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69105054	A	A	69105054	2	1	9	1	0	0	0	0	0	0	0	1	16955	639	23	1		1	UBA3	3	69105054	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20790	69105054	128917376	4750	12901											
LMOD3	56203	broad.mit.edu	37	chr3	69168366	69168366	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccaccattctgggaccCggaagctcaaaatggtagcc	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69168366	A	A	69168366	2	1	9	1	0	0	0	0	0	0	0	1	8932	639	23	1		1	LMOD3	3	69168366	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63312	69168366	128854064	4751	12902											
MITF	4286	broad.mit.edu	37	chr3	70014096	70014096	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggatcatcaagcaagaaccCgttcttgagaactgcagcca	9	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70014096	A	A	70014096	2	1	9	1	0	0	0	0	0	0	0	1	9689	639	23	1		1	MITF	3	70014096	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	845730	70014096	128008334	4752	12903											
FOXP1	27086	broad.mit.edu	37	chr3	71008377	71008377	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttccaatcttcattctcGgggttggcccgccccgatag	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71008377	T	T	71008377	1	4	9	0	1	0	0	0	0	0	0	0	6086	1131	39	1		1	FOXP1	3	71008377	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	994281	71008377	127014053	4753	12904											
FOXP1	27086	broad.mit.edu	37	chr3	71015122	71015122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccccgttcagctcttccCgtattgcgctggctaagttg	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71015122	A	A	71015122	3	1	9	1	0	0	0	0	1	0	0	0	6086	652	23	1	233	1	FOXP1	3	71015122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6745	71015122	127007308	4754	12905											
FOXP1	27086	broad.mit.edu	37	chr3	71037145	71037145	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggggatcaatacttacGggctgaggggcggctttggg	19	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71037145	T	T	71037145	2	4	9	1	0	0	0	0	0	0	0	1	6086	1130	39	1		1	FOXP1	3	71037145	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22023	71037145	126985285	4755	12906											
SHQ1	55164	broad.mit.edu	37	chr3	72897261	72897261	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaaggcattcgcgcaatcGagcactgctctctcgacctt	9	13	1	0	rs142274609	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72897261	T	T	72897261	1	4	9	0	1	0	0	0	0	0	0	0	14405	1073	37	3		3	SHQ1	3	72897261	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1860116	72897261	125125169	4756	12907											
GXYLT2	727936	broad.mit.edu	37	chr3	73024209	73024209	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgtgcacactttatgtGgacgaatcccgcaagttttt	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73024209	T	T	73024209	4	4	9	1	0	0	0	0	0	1	0	0	6969	1349	47	2	1257	2	GXYLT2	3	73024209	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126948	73024209	124998221	4757	12908											
PDZRN3	23024	broad.mit.edu	37	chr3	73437061	73437061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgctcttttgcaggcctGgggatcttttgattttagaa	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73437061	T	T	73437061	1	4	9	0	1	0	0	0	0	0	0	0	11803	1363	47	2		2	PDZRN3	3	73437061	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	412852	73437061	124585369	4758	12909											
PDZRN3	23024	broad.mit.edu	37	chr3	73450058	73450058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcctaaaatgagacaaGgatgttcttcatacctccag	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73450058	T	T	73450058	1	4	9	0	1	0	0	0	0	0	0	0	11803	1015	35	2		2	PDZRN3	3	73450058	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12997	73450058	124572372	4759	12910											
CNTN3	5067	broad.mit.edu	37	chr3	74413646	74413646	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagctcagcactggaataAacaaggccatgtttgttttc	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74413646	C	C	74413646	2	2	9	1	0	0	0	0	0	0	0	1	3674	1	1	5		5	CNTN3	3	74413646	Silent	SNP	A	TCGA-05-4396-01A-21D-1855-08	963588	74413646	123608784	4760	12911											
CNTN3	5067	broad.mit.edu	37	chr3	74414846	74414846	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgagttgaacccaatgGggctttgcttcaatgaaaga	10	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74414846	T	T	74414846	2	4	9	1	0	0	0	0	0	0	0	1	3674	1219	43	2		2	CNTN3	3	74414846	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1200	74414846	123607584	4761	12912											
ROBO2	6092	broad.mit.edu	37	chr3	77572050	77572050	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgctacactcaccgtcCgaggtaagagatttaagatg	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77572050	A	A	77572050	2	1	9	1	0	0	0	0	0	0	0	1	13625	644	23	1		1	ROBO2	3	77572050	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3157204	77572050	120450380	4762	12913											
ROBO2	6092	broad.mit.edu	37	chr3	77693982	77693982	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgagagcaggccaccaGcgcaatgccagcgaccttct	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77693982	C	C	77693982	3	2	9	1	0	0	0	0	1	0	0	0	13625	962	34	4	4162	4	ROBO2	3	77693982	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121932	77693982	120328448	4763	12914											
ROBO1	6091	broad.mit.edu	37	chr3	78655873	78655873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttatttgctgcttgattGgatgagtaccttggatgaga	11	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78655873	T	T	78655873	1	4	9	0	1	0	0	0	0	0	0	0	13624	1363	47	2		2	ROBO1	3	78655873	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	961891	78655873	119366557	4764	12915											
ROBO1	6091	broad.mit.edu	37	chr3	78655918	78655918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctttgctggtggaaggtctCgttttgctgccttgtttcca	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78655918	A	A	78655918	3	1	9	1	0	0	0	0	1	0	0	0	13624	884	31	3	258	3	ROBO1	3	78655918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	78655918	119366512	4765	12916											
ROBO1	6091	broad.mit.edu	37	chr3	78655977	78655977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgttcctgtgcttctctGggatcacctggatttgttcg	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78655977	T	T	78655977	2	4	9	1	0	0	0	0	0	0	0	1	13624	1335	47	2		2	ROBO1	3	78655977	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	59	78655977	119366453	4766	12917											
CADM2	253559	broad.mit.edu	37	chr3	86061875	86061875	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcggctgggcgcgttgactCacgcctgtaatcccagcact	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86061875	G	G	86061875	1	3	9	0	1	0	0	0	0	0	0	0	2593	841	29	4		4	CADM2	3	86061875	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7405898	86061875	111960555	4767	12918											
CHMP2B	25978	broad.mit.edu	37	chr3	87276761	87276761	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcgttttctcggcgtctttCgaggcctgctggccgcgatt	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87276761	G	G	87276761	1	3	9	0	1	0	0	0	0	0	0	0	3386	899	31	4		4	CHMP2B	3	87276761	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1214886	87276761	110745669	4768	12919											
HTR1F	3355	broad.mit.edu	37	chr3	88040053	88040053	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgcaattattgtgaccCggaagctgcaccatccagcc	9	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88040053	A	A	88040053	2	1	9	1	0	0	0	0	0	0	0	1	7510	643	23	1		1	HTR1F	3	88040053	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	763292	88040053	109982377	4769	12920											
EPHA3	2042	broad.mit.edu	37	chr3	89390123	89390123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaagtgtgctaagtgccCgcctcacagttctactcagg	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89390123	A	A	89390123	3	1	9	1	0	0	0	0	1	0	0	0	5210	652	23	1	886	1	EPHA3	3	89390123	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1350070	89390123	108632307	4770	12921											
EPHA3	2042	broad.mit.edu	37	chr3	89390186	89390186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgagaataattacttccGggcagacaaagaccctccat	9	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89390186	T	T	89390186	3	4	9	1	0	0	0	0	1	0	0	0	5210	1116	39	1	949	1	EPHA3	3	89390186	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	89390186	108632244	4771	12922											
PROS1	5627	broad.mit.edu	37	chr3	93595859	93595859	+	Missense_Mutation	SNP	C	A	A													tttgctttcattgctttgtcCaagacggcaagttgtctttg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93595859	A	A	93595859	3	1	9	1	0	0	0	0	1	0	0	0	12664	593	21	2	217	2	PROS1	3	93595859	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4205673	93595859	104426571	4772	12923	79	2									
PROS1	5627	broad.mit.edu	37	chr3	93595865	93595865	+	Silent	SNP	G	T	T													ttcattgctttgtccaagacGgcaagttgtctttgaaggtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93595865	T	T	93595865	2	4	9	1	0	0	0	0	0	0	0	1	12664	1103	39	1		1	PROS1	3	93595865	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	93595865	104426565	4773	12924	79	2									
PROS1	5627	broad.mit.edu	37	chr3	93605170	93605170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgaatgatacaagcttGgatcattaccggtttaatga	9	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93605170	T	T	93605170	1	4	9	0	1	0	0	0	0	0	0	0	12664	1363	47	2		2	PROS1	3	93605170	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9305	93605170	104417260	4774	12925											
PROS1	5627	broad.mit.edu	37	chr3	93605266	93605266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattttccggcttaaaaaGgggtccaggtttatttatat	8	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93605266	T	T	93605266	3	4	9	1	0	0	0	0	1	0	0	0	12664	1000	35	2	813	2	PROS1	3	93605266	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96	93605266	104417164	4775	12926											
PROS1	5627	broad.mit.edu	37	chr3	93611746	93611746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatacagactgcatcaaagtGggaagatattgatgaaatct	9	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93611746	T	T	93611746	1	4	9	0	1	0	0	0	0	0	0	0	12664	1363	47	2		2	PROS1	3	93611746	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6480	93611746	104410684	4776	12927											
ARL13B	200894	broad.mit.edu	37	chr3	93699265	93699265	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtgggaggagcgacccGggatgttcagtctgatggcc	18	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93699265	T	T	93699265	1	4	9	0	1	0	0	0	0	0	0	0	931	1131	39	1		1	ARL13B	3	93699265	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	87519	93699265	104323165	4777	12928											
ARL13B	200894	broad.mit.edu	37	chr3	93722607	93722607	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggaggtggaataagaattCggggaatctggaagaattac	15	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93722607	A	A	93722607	2	1	9	1	0	0	0	0	0	0	0	1	931	875	31	3		3	ARL13B	3	93722607	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23342	93722607	104299823	4778	12929											
STX19	415117	broad.mit.edu	37	chr3	93733900	93733900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacttttctgttgctgccCaaatttttgaacattatctg	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93733900	A	A	93733900	3	1	9	1	0	0	0	0	1	0	0	0	15460	594	21	2	674	2	STX19	3	93733900	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11293	93733900	104288530	4779	12930											
STX19	415117	broad.mit.edu	37	chr3	93733940	93733940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaattgttaatactttcCtgtagtttttggatttcatg	7	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93733940	A	A	93733940	3	1	9	1	0	0	0	0	1	0	0	0	15460	680	24	2	714	2	STX19	3	93733940	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	93733940	104288490	4780	12931											
ARL13B	200894	broad.mit.edu	37	chr3	93768298	93768298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgaaaaggaaccaccGggtagaaccacttaatatag	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93768298	T	T	93768298	3	4	9	1	0	0	0	0	1	0	0	0	931	1116	39	1	1103	1	ARL13B	3	93768298	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34358	93768298	104254132	4781	12932											
EPHA6	285220	broad.mit.edu	37	chr3	96706175	96706175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttttccctttttgcagtGggatgccatcactgaaatgg	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96706175	T	T	96706175	3	4	9	1	0	0	0	0	1	0	0	0	5213	1362	47	2	462	2	EPHA6	3	96706175	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2937877	96706175	101316255	4782	12933											
EPHA6	285220	broad.mit.edu	37	chr3	96706491	96706491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttttacccagatggatttGggtgatcgcatcctcaaact	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96706491	T	T	96706491	3	4	9	1	0	0	0	0	1	0	0	0	5213	1339	47	2	778	2	EPHA6	3	96706491	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	316	96706491	101315939	4783	12934											
EPHA6	285220	broad.mit.edu	37	chr3	96945243	96945243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccgagctgaaaaagaccCaccttctatggcatgtacca	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96945243	A	A	96945243	3	1	9	1	0	0	0	0	1	0	0	0	5213	594	21	2	1264	2	EPHA6	3	96945243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	238752	96945243	101077187	4784	12935											
MINA	84864	broad.mit.edu	37	chr3	97669699	97669699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtatcaaatacaagcccCgagatggtatccaaaaggaa	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97669699	A	A	97669699	2	1	9	1	0	0	0	0	0	0	0	1	9679	639	23	1		1	MINA	3	97669699	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	724456	97669699	100352731	4785	12936											
MINA	84864	broad.mit.edu	37	chr3	97686163	97686163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccatagtacatccccCggctgcacagactcttcaga	6	16	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97686163	A	A	97686163	3	1	9	1	0	0	0	0	1	0	0	0	9679	652	23	1	1158	1	MINA	3	97686163	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16464	97686163	100336267	4786	12937											
OR5H14	403273	broad.mit.edu	37	chr3	97868359	97868359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccatcatggggaatcttGgtctgattgctgtcatctgg	11	9	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97868359	T	T	97868359	3	4	9	1	0	0	0	0	1	0	0	0	11254	1348	47	2	132	2	OR5H14	3	97868359	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	182196	97868359	100154071	4787	12938											
OR5H2	79310	broad.mit.edu	37	chr3	98001936	98001936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccatgtacttttttcttGggagtttagcctttgttgat	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98001936	T	T	98001936	3	4	9	1	0	0	0	0	1	0	0	0	11256	1348	47	2	207	2	OR5H2	3	98001936	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	133577	98001936	100020494	4788	12939											
OR5H2	79310	broad.mit.edu	37	chr3	98002321	98002321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgatttcctgtactgaccCttctattaattttctaatgg	5	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98002321	A	A	98002321	3	1	9	1	0	0	0	0	1	0	0	0	11256	681	24	2	592	2	OR5H2	3	98002321	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	385	98002321	100020109	4789	12940											
OR5K4	403278	broad.mit.edu	37	chr3	98072678	98072678	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatttctttacaatttatgTctcagaagagaagccaggaa	7	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98072678	A	A	98072678	1	1	9	0	1	0	0	0	0	0	0	0	11263	1682	58	5		5	OR5K4	3	98072678	5'Flank	SNP	T	TCGA-05-4396-01A-21D-1855-08	70357	98072678	99949752	4790	12941											
OR5K3	403277	broad.mit.edu	37	chr3	98109629	98109629	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctatctgatcaccatggtGgggaacattggtttggtggc	13	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98109629	T	T	98109629	2	4	9	1	0	0	0	0	0	0	0	1	11262	1335	47	2		2	OR5K3	3	98109629	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36951	98109629	99912801	4791	12942											
OR5K1	26339	broad.mit.edu	37	chr3	98188540	98188540	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctatctgatcaccgtggtGgggaatattagtttggtggc	13	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98188540	T	T	98188540	2	4	9	1	0	0	0	0	0	0	0	1	11260	1335	47	2		2	OR5K1	3	98188540	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	78911	98188540	99833890	4792	12943											
OR5K2	402135	broad.mit.edu	37	chr3	98216910	98216910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtggccatctgcaaccCactgcagtaccacatcatga	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98216910	A	A	98216910	3	1	9	1	0	0	0	0	1	0	0	0	11261	594	21	2	388	2	OR5K2	3	98216910	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28370	98216910	99805520	4793	12944											
OR5K2	402135	broad.mit.edu	37	chr3	98217073	98217073	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttactgtgatactcttccCttgtatagactctcctgtgt	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98217073	A	A	98217073	2	1	9	1	0	0	0	0	0	0	0	1	11261	668	24	2		2	OR5K2	3	98217073	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	163	98217073	99805357	4794	12945											
CLDND1	56650	broad.mit.edu	37	chr3	98240030	98240030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgggtatggtgatacacCgtctccacaatcccactgtg	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98240030	A	A	98240030	3	1	9	1	0	0	0	0	1	0	0	0	3525	652	23	1	538	1	CLDND1	3	98240030	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22957	98240030	99782400	4795	12946											
GPR15	2838	broad.mit.edu	37	chr3	98251856	98251856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaaaaactatgactttGggagtagcactgagacatca	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98251856	T	T	98251856	3	4	9	1	0	0	0	0	1	0	0	0	6720	1348	47	2	981	2	GPR15	3	98251856	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11826	98251856	99770574	4796	12947											
CPOX	1371	broad.mit.edu	37	chr3	98300326	98300326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggccaaactttgtgcccCgatcatacagcagattaaat	8	10	1	2	rs35598046		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98300326	A	A	98300326	3	1	9	1	0	0	0	0	1	0	0	0	3853	652	23	1	170	1	CPOX	3	98300326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48470	98300326	99722104	4797	12948											
ST3GAL6	10402	broad.mit.edu	37	chr3	98492810	98492810	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaactgcagagttgtgatctCtttgatgagtttgacaagtg	11	5	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98492810	A	A	98492810	2	1	9	1	0	0	0	0	0	0	0	1	15337	900	32	3		3	ST3GAL6	3	98492810	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	192484	98492810	99529620	4798	12949											
DCBLD2	131566	broad.mit.edu	37	chr3	98531207	98531207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgacatccgagcagctcCattttcatggcaattttctg	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98531207	A	A	98531207	3	1	9	1	0	0	0	0	1	0	0	0	4314	594	21	2	1023	2	DCBLD2	3	98531207	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38397	98531207	99491223	4799	12950											
COL8A1	1295	broad.mit.edu	37	chr3	99514797	99514797	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattcaagaacaacgagccCgtgatgtacacgtacgacga	9	11	1	2	rs140332231		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99514797	A	A	99514797	2	1	9	1	0	0	0	0	0	0	0	1	3737	639	23	1		1	COL8A1	3	99514797	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	983590	99514797	98507633	4800	12951											
FILIP1L	11259	broad.mit.edu	37	chr3	99567249	99567249	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaattaagccttgagttcGgttatcctgcagtggtgctg	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99567249	T	T	99567249	2	4	9	1	0	0	0	0	0	0	0	1	5952	1124	39	1		1	FILIP1L	3	99567249	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	52452	99567249	98455181	4801	12952											
FILIP1L	11259	broad.mit.edu	37	chr3	99567727	99567727	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcggtatcactgcagtactCgtgtaagagtgaggactctc	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99567727	A	A	99567727	2	1	9	1	0	0	0	0	0	0	0	1	5952	871	31	3		3	FILIP1L	3	99567727	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	478	99567727	98454703	4802	12953											
C3orf26	84319	broad.mit.edu	37	chr3	99895256	99895256	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaatgatggacattccCgaggtaccacgtaaccagca	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99895256	A	A	99895256	2	1	9	1	0	0	0	0	0	0	0	1	2240	639	23	1		1	C3orf26	3	99895256	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	327529	99895256	98127174	4803	12954											
LNP1	348801	broad.mit.edu	37	chr3	100148513	100148513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcattgtcagccctgttGggtgatatttccctctgtcg	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100148513	T	T	100148513	1	4	9	0	1	0	0	0	0	0	0	0	8937	1363	47	2		2	LNP1	3	100148513	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	253257	100148513	97873917	4804	12955											
GPR128	84873	broad.mit.edu	37	chr3	100362125	100362125	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggcttattgagcaaatGgagacttattccttgtcttt	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100362125	C	C	100362125	3	2	9	1	0	0	0	0	1	0	0	0	6706	1348	47	4	740	4	GPR128	3	100362125	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	213612	100362125	97660305	4805	12956											
IMPG2	50939	broad.mit.edu	37	chr3	100947613	100947613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgttaagtctgtaggtcGgggtggggggctgtttcaaa	16	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100947613	T	T	100947613	1	4	9	0	1	0	0	0	0	0	0	0	7799	1131	39	1		1	IMPG2	3	100947613	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	585488	100947613	97074817	4806	12957											
IMPG2	50939	broad.mit.edu	37	chr3	100949926	100949926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtgatgcctatgatcacGggctcagacacaaattcctc	8	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100949926	T	T	100949926	2	4	9	1	0	0	0	0	0	0	0	1	7799	1103	39	1		1	IMPG2	3	100949926	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2313	100949926	97072504	4807	12958											
IMPG2	50939	broad.mit.edu	37	chr3	100951638	100951638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatacctacaaatggcccCgtgcccaggcataatgtcac	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100951638	A	A	100951638	3	1	9	1	0	0	0	0	1	0	0	0	7799	652	23	1	525	1	IMPG2	3	100951638	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1712	100951638	97070792	4808	12959											
IMPG2	50939	broad.mit.edu	37	chr3	100962897	100962897	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccattgaaacctcactgtCaaaccattcatagttggatg	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100962897	A	A	100962897	3	1	9	1	0	0	0	0	1	0	0	0	7799	826	29	3	1475	3	IMPG2	3	100962897	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11259	100962897	97059533	4809	12960											
IMPG2	50939	broad.mit.edu	37	chr3	100964605	100964605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttaaaacccctgtcatcGgatacaataagaagtacgaa	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100964605	T	T	100964605	1	4	9	0	1	0	0	0	0	0	0	0	7799	1131	39	1		1	IMPG2	3	100964605	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1708	100964605	97057825	4810	12961											
IMPG2	50939	broad.mit.edu	37	chr3	101038523	101038523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaaacagaatagatctcCgccttctgattaaccactgt	7	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101038523	A	A	101038523	3	1	9	1	0	0	0	0	1	0	0	0	7799	652	23	1	3558	1	IMPG2	3	101038523	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73918	101038523	96983907	4811	12962											
SENP7	57337	broad.mit.edu	37	chr3	101177836	101177836	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtaacaggacaccctcGgatatgttttttatttttat	8	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101177836	T	T	101177836	2	4	9	1	0	0	0	0	0	0	0	1	14164	1124	39	1		1	SENP7	3	101177836	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	139313	101177836	96844594	4812	12963											
SENP7	57337	broad.mit.edu	37	chr3	101231956	101231956	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatgaagatggccgtcgccCgagctttctcttgtccatct	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101231956	G	G	101231956	3	3	9	1	0	0	0	0	1	0	0	0	14164	652	23	4	3229	4	SENP7	3	101231956	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54120	101231956	96790474	4813	12964											
SENP7	57337	broad.mit.edu	37	chr3	101231982	101231982	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttgtccatcttctccCgctgctgaaatttcagttgc	6	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101231982	A	A	101231982	1	1	9	0	1	0	0	0	0	0	0	0	14164	667	23	1		1	SENP7	3	101231982	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	101231982	96790448	4814	12965											
RG9MTD1	54931	broad.mit.edu	37	chr3	101284173	101284173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctatttttacgactttGggataggaatatggacatag	9	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101284173	T	T	101284173	3	4	9	1	0	0	0	0	1	0	0	0	13379	1357	47	2	550	2	RG9MTD1	3	101284173	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52191	101284173	96738257	4815	12966											
ZBTB11	27107	broad.mit.edu	37	chr3	101384030	101384030	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgttttggaatgtcttcGgcacaaatatcctcagctga	8	9	2	1	rs148802535	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101384030	T	T	101384030	2	4	9	1	0	0	0	0	0	0	0	1	17650	1103	39	1		1	ZBTB11	3	101384030	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99857	101384030	96638400	4816	12967											
ZBTB11	27107	broad.mit.edu	37	chr3	101390912	101390912	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttgctcaggtcatcttcCgattcattactttcttctcc	5	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101390912	A	A	101390912	2	1	9	1	0	0	0	0	0	0	0	1	17650	639	23	1		1	ZBTB11	3	101390912	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6882	101390912	96631518	4817	12968											
ZBTB11	27107	broad.mit.edu	37	chr3	101390985	101390985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgaaacatctgatattGgacgggatcgatctagtttc	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101390985	T	T	101390985	3	4	9	1	0	0	0	0	1	0	0	0	17650	1348	47	2	2818	2	ZBTB11	3	101390985	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73	101390985	96631445	4818	12969											
RPL24	6152	broad.mit.edu	37	chr3	101399999	101399999	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcgttttccaccaactcGgggagctgaaactttcacag	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101399999	T	T	101399999	2	4	9	1	0	0	0	0	0	0	0	1	13683	1124	39	1		1	RPL24	3	101399999	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9014	101399999	96622431	4819	12970											
CEP97	79598	broad.mit.edu	37	chr3	101443482	101443482	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaagctccacagagccgcGggaggacggttgcctggtat	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101443482	T	T	101443482	1	4	9	0	1	0	0	0	0	0	0	0	3293	1131	39	1		1	CEP97	3	101443482	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	43483	101443482	96578948	4820	12971											
CEP97	79598	broad.mit.edu	37	chr3	101477064	101477064	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaacttcagagaaacttccCatgattttaacccagagatc	6	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101477064	G	G	101477064	2	3	9	1	0	0	0	0	0	0	0	1	3293	581	21	4		4	CEP97	3	101477064	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33582	101477064	96545366	4821	12972											
FAM55C	91775	broad.mit.edu	37	chr3	101504445	101504445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacacagccagacaatgtGgaccaatttcttcaaactac	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101504445	T	T	101504445	3	4	9	1	0	0	0	0	1	0	0	0	5637	1357	47	2	7	2	FAM55C	3	101504445	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27381	101504445	96517985	4822	12973											
FAM55C	91775	broad.mit.edu	37	chr3	101504543	101504543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggtagaggtgagtaccCagtataatccctcataacta	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101504543	A	A	101504543	1	1	9	0	1	0	0	0	0	0	0	0	5637	609	21	2		2	FAM55C	3	101504543	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	101504543	96517887	4823	12974											
ALCAM	214	broad.mit.edu	37	chr3	105250889	105250889	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaagcaaagcactgtttctCgaaacagagcagctaaaaaa	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105250889	A	A	105250889	2	1	9	1	0	0	0	0	0	0	0	1	487	871	31	3		3	ALCAM	3	105250889	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3746346	105250889	92771541	4824	12975											
ALCAM	214	broad.mit.edu	37	chr3	105266018	105266018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaggcttcgatctagccCgtcattttctagtcttcatt	6	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105266018	A	A	105266018	3	1	9	1	0	0	0	0	1	0	0	0	487	652	23	1	1168	1	ALCAM	3	105266018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15129	105266018	92756412	4825	12976											
BBX	56987	broad.mit.edu	37	chr3	107447652	107447652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaatcctggctacaaatGgtgtcctaccacaaacaagc	7	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107447652	T	T	107447652	3	4	9	1	0	0	0	0	1	0	0	0	1348	1357	47	2	456	2	BBX	3	107447652	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2181634	107447652	90574778	4826	12977											
BBX	56987	broad.mit.edu	37	chr3	107492264	107492264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctagcaagaacatttctGgtgagacaccagagggtata	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107492264	T	T	107492264	3	4	9	1	0	0	0	0	1	0	0	0	1348	1348	47	2	1726	2	BBX	3	107492264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44612	107492264	90530166	4827	12978											
HHLA2	11148	broad.mit.edu	37	chr3	108076864	108076864	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaattatcaatgaatccCgattctcatggaacaaagag	6	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108076864	A	A	108076864	2	1	9	1	0	0	0	0	0	0	0	1	7162	644	23	1		1	HHLA2	3	108076864	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	584600	108076864	89945566	4828	12979											
MYH15	22989	broad.mit.edu	37	chr3	108135723	108135723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaagttgctcttttccCtggaaagttggtttatcaga	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108135723	A	A	108135723	3	1	9	1	0	0	0	0	1	0	0	0	10128	681	24	2	1948	2	MYH15	3	108135723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58859	108135723	89886707	4829	12980											
MYH15	22989	broad.mit.edu	37	chr3	108147316	108147316	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccatgttcagaagaccacGaggatggcatgggagtatct	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108147316	T	T	108147316	1	4	9	0	1	0	0	0	0	0	0	0	10128	1073	37	3		3	MYH15	3	108147316	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11593	108147316	89875114	4830	12981											
MYH15	22989	broad.mit.edu	37	chr3	108147365	108147365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtcatctgctcaacacGggtcaggaggtcatctactt	9	11	7	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108147365	T	T	108147365	3	4	9	1	0	0	0	0	1	0	0	0	10128	1116	39	1	2164	1	MYH15	3	108147365	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49	108147365	89875065	4831	12982											
MYH15	22989	broad.mit.edu	37	chr3	108204143	108204143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtgagcacctcaccccCgctgtgttacacctcgggct	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108204143	A	A	108204143	1	1	9	0	1	0	0	0	0	0	0	0	10128	667	23	1		1	MYH15	3	108204143	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56778	108204143	89818287	4832	12983											
MYH15	22989	broad.mit.edu	37	chr3	108218212	108218212	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaattaattcaaagatggcGaatcaaagttttattcccag	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108218212	T	T	108218212	1	4	9	0	1	0	0	0	0	0	0	0	10128	1073	37	3		3	MYH15	3	108218212	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14069	108218212	89804218	4833	12984											
KIAA1524	57650	broad.mit.edu	37	chr3	108298213	108298213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagttagagtgccatcacCgtttatgagaatattaaata	7	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108298213	A	A	108298213	3	1	9	1	0	0	0	0	1	0	0	0	8309	652	23	1	2044	1	KIAA1524	3	108298213	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80001	108298213	89724217	4834	12985											
TRAT1	50852	broad.mit.edu	37	chr3	108549603	108549603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgatcttcaatatttccCactatgtggaaaagcaacga	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108549603	A	A	108549603	3	1	9	1	0	0	0	0	1	0	0	0	16590	594	21	2	100	2	TRAT1	3	108549603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	251390	108549603	89472827	4835	12986											
DPPA2	151871	broad.mit.edu	37	chr3	109026991	109026991	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgatgccaacatggctccCggtgctgaagttatcacttc	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109026991	A	A	109026991	2	1	9	1	0	0	0	0	0	0	0	1	4774	639	23	1		1	DPPA2	3	109026991	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	477388	109026991	88995439	4836	12987											
DPPA2	151871	broad.mit.edu	37	chr3	109028038	109028038	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgccattagtactcaaaccGagttgttgacaccagtcccg	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109028038	T	T	109028038	2	4	9	1	0	0	0	0	0	0	0	1	4774	1045	37	3		3	DPPA2	3	109028038	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1047	109028038	88994392	4837	12988											
DPPA2	151871	broad.mit.edu	37	chr3	109028057	109028057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagttgttgacaccagtccCgcaaagtgtcccgacacacc	9	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109028057	A	A	109028057	3	1	9	1	0	0	0	0	1	0	0	0	4774	652	23	1	614	1	DPPA2	3	109028057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	109028057	88994373	4838	12989											
DPPA4	55211	broad.mit.edu	37	chr3	109046938	109046938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaatagccaagaaaccCgctgctggaatgctgttgaa	9	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109046938	A	A	109046938	1	1	9	0	1	0	0	0	0	0	0	0	4776	667	23	1		1	DPPA4	3	109046938	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18881	109046938	88975492	4839	12990											
DPPA4	55211	broad.mit.edu	37	chr3	109049625	109049625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttttttgcaatgatttcCggattttggcctcttttgct	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109049625	A	A	109049625	3	1	9	1	0	0	0	0	1	0	0	0	4776	652	23	1	501	1	DPPA4	3	109049625	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2687	109049625	88972805	4840	12991											
PVRL3	25945	broad.mit.edu	37	chr3	110852528	110852528	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacaattcagtggcatccCtcaactgctgacatcgagga	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110852528	A	A	110852528	2	1	9	1	0	0	0	0	0	0	0	1	12949	668	24	2		2	PVRL3	3	110852528	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1802903	110852528	87169902	4841	12992											
CD96	10225	broad.mit.edu	37	chr3	111296363	111296363	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttaggaaaacagcagcacGgattcttgggtccttctttc	9	11	2	0	rs142203509		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111296363	T	T	111296363	2	4	9	1	0	0	0	0	0	0	0	1	3078	1103	39	1		1	CD96	3	111296363	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	443835	111296363	86726067	4842	12993											
PLCXD2	257068	broad.mit.edu	37	chr3	111427123	111427123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatgccatggatgagaccCatcacaaatgcctggttctg	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111427123	A	A	111427123	3	1	9	1	0	0	0	0	1	0	0	0	12137	594	21	2	520	2	PLCXD2	3	111427123	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	130760	111427123	86595307	4843	12994											
PLCXD2	257068	broad.mit.edu	37	chr3	111432757	111432757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttattttctaccactgtccCttctacaagcagtacccctt	3	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111432757	A	A	111432757	2	1	9	1	0	0	0	0	0	0	0	1	12137	668	24	2		2	PLCXD2	3	111432757	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5634	111432757	86589673	4844	12995											
PHLDB2	90102	broad.mit.edu	37	chr3	111603695	111603695	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctacagccgatcacttccCaggttgtacagagccacaga	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111603695	A	A	111603695	2	1	9	1	0	0	0	0	0	0	0	1	11947	581	21	2		2	PHLDB2	3	111603695	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	170938	111603695	86418735	4845	12996											
PHLDB2	90102	broad.mit.edu	37	chr3	111637979	111637979	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgcaatggaagaaaccCggatagtcattctgaacaac	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111637979	A	A	111637979	2	1	9	1	0	0	0	0	0	0	0	1	11947	643	23	1		1	PHLDB2	3	111637979	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34284	111637979	86384451	4846	12997											
PHLDB2	90102	broad.mit.edu	37	chr3	111685541	111685541	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagaaaagacgcggctgctCgaatccagggtaagcttcat	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111685541	A	A	111685541	2	1	9	1	0	0	0	0	0	0	0	1	11947	871	31	3		3	PHLDB2	3	111685541	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47562	111685541	86336889	4847	12998											
ABHD10	55347	broad.mit.edu	37	chr3	111710467	111710467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgtggatgtcatcctcCgaaaacacagtgatcaccga	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111710467	A	A	111710467	2	1	9	1	0	0	0	0	0	0	0	1	74	644	23	1		1	ABHD10	3	111710467	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24926	111710467	86311963	4848	12999											
TAGLN3	29114	broad.mit.edu	37	chr3	111719708	111719708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatggcttttaagcagatGgagcaaatctcccagttcct	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111719708	T	T	111719708	3	4	9	1	0	0	0	0	1	0	0	0	15659	1348	47	2	276	2	TAGLN3	3	111719708	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9241	111719708	86302722	4849	13000											
TMPRSS7	344805	broad.mit.edu	37	chr3	111769587	111769587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcaagcccatattaccCgagctactatcctccaaaat	3	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111769587	A	A	111769587	3	1	9	1	0	0	0	0	1	0	0	0	16375	652	23	1	804	1	TMPRSS7	3	111769587	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49879	111769587	86252843	4850	13001											
TMPRSS7	344805	broad.mit.edu	37	chr3	111782383	111782383	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccatagcctgccctgttGgatcttttagatgctcctcc	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111782383	T	T	111782383	4	4	9	1	0	0	0	0	0	1	0	0	16375	1349	47	2	1115	2	TMPRSS7	3	111782383	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12796	111782383	86240047	4851	13002											
SLC9A10	285335	broad.mit.edu	37	chr3	111870134	111870134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgaacagttaactgtcGgactgtcctcctcattgttc	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111870134	T	T	111870134	1	4	9	0	1	0	0	0	0	0	0	0	14824	1131	39	1		1	SLC9A10	3	111870134	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	87751	111870134	86152296	4852	13003											
CD200	4345	broad.mit.edu	37	chr3	112054835	112054835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccttacagctacactcCtaggaaagaccaccatcaat	4	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112054835	A	A	112054835	3	1	9	1	0	0	0	0	1	0	0	0	3010	680	24	2	64	2	CD200	3	112054835	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	184701	112054835	85967595	4853	13004											
BTLA	151888	broad.mit.edu	37	chr3	112188618	112188618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttaccaggttaatttccCttcctgctgtgtcagagagt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112188618	A	A	112188618	3	1	9	1	0	0	0	0	1	0	0	0	1568	681	24	2	296	2	BTLA	3	112188618	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133783	112188618	85833812	4854	13005											
BTLA	151888	broad.mit.edu	37	chr3	112198617	112198617	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatcacatgattctttccCtaaaagataaaaacaaaact	2	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112198617	A	A	112198617	5	1	9	1	0	0	0	0	0	0	1	0	1568	695	24	2	797	2	BTLA	3	112198617	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	9999	112198617	85823813	4855	13006											
SLC35A5	55032	broad.mit.edu	37	chr3	112289544	112289544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatgaaaaagaaaatacCattgaaaagatacagagaaa	6	3	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112289544	A	A	112289544	1	1	9	0	1	0	0	0	0	0	0	0	14688	609	21	2		2	SLC35A5	3	112289544	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	90927	112289544	85732886	4856	13007											
CD200R1L	344807	broad.mit.edu	37	chr3	112546283	112546283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactatgcctctgtaataccCgtcatgagtggtgtccaccg	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112546283	A	A	112546283	3	1	9	1	0	0	0	0	1	0	0	0	3012	652	23	1	470	1	CD200R1L	3	112546283	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	256739	112546283	85476147	4857	13008											
BOC	91653	broad.mit.edu	37	chr3	112997025	112997025	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcaccagacttgacccCgggagcttgtatgaagtgga	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112997025	A	A	112997025	2	1	9	1	0	0	0	0	0	0	0	1	1487	639	23	1		1	BOC	3	112997025	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	450742	112997025	85025405	4858	13009											
BOC	91653	broad.mit.edu	37	chr3	112998695	112998695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctacaagtttcgagtccGggctctgaacatgctggggg	13	11	1	1	rs148337178		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112998695	T	T	112998695	3	4	9	1	0	0	0	0	1	0	0	0	1487	1116	39	1	2087	1	BOC	3	112998695	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1670	112998695	85023735	4859	13010											
BOC	91653	broad.mit.edu	37	chr3	113002261	113002261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtccacaattacagctcGgaagtcttctggccagcctg	9	12	2	0	rs140427394	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113002261	T	T	113002261	3	4	9	1	0	0	0	0	1	0	0	0	1487	1116	39	1	2489	1	BOC	3	113002261	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3566	113002261	85020169	4860	13011											
WDR52	55779	broad.mit.edu	37	chr3	113084889	113084889	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaattaattacataccctGggagatggaactttggcctt	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113084889	T	T	113084889	2	4	9	1	0	0	0	0	0	0	0	1	17431	1335	47	2		2	WDR52	3	113084889	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	82628	113084889	84937541	4861	13012											
WDR52	55779	broad.mit.edu	37	chr3	113118758	113118758	+	Silent	SNP	G	T	T													taacaacaaacttaccattcGgggtacccaaacaagggcag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113118758	T	T	113118758	2	4	9	1	0	0	0	0	0	0	0	1	17431	1124	39	1		1	WDR52	3	113118758	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33869	113118758	84903672	4862	13013	80	2									
WDR52	55779	broad.mit.edu	37	chr3	113118766	113118766	+	Missense_Mutation	SNP	C	A	A													aacttaccattcggggtaccCaaacaagggcagtacctcct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113118766	A	A	113118766	3	1	9	1	0	0	0	0	1	0	0	0	17431	595	21	2	4115	2	WDR52	3	113118766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	113118766	84903664	4863	13014	80	2									
CCDC52	152185	broad.mit.edu	37	chr3	113166908	113166908	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtatttatcccgctgacGggagagacagtactacattt	9	9	0	2	rs61748326	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113166908	T	T	113166908	2	4	9	1	0	0	0	0	0	0	0	1	2850	1103	39	1		1	CCDC52	3	113166908	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48142	113166908	84855522	4864	13015											
SIDT1	54847	broad.mit.edu	37	chr3	113329911	113329911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaagctctatcagaccCgccacccagacatcaatgcc	7	16	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113329911	A	A	113329911	3	1	9	1	0	0	0	0	1	0	0	0	14415	652	23	1	1847	1	SIDT1	3	113329911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	163003	113329911	84692519	4865	13016											
KIAA2018	205717	broad.mit.edu	37	chr3	113375178	113375178	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttgacggtcaattggtGgggggccagtgttttgacta	14	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113375178	T	T	113375178	3	4	9	1	0	0	0	0	1	0	0	0	8338	1348	47	2	1390	2	KIAA2018	3	113375178	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45267	113375178	84647252	4866	13017											
KIAA2018	205717	broad.mit.edu	37	chr3	113379400	113379400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggccttccctactccagGggcagatgatgccaccactg	12	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113379400	T	T	113379400	3	4	9	1	0	0	0	0	1	0	0	0	8338	1232	43	2	5612	2	KIAA2018	3	113379400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4222	113379400	84643030	4867	13018											
KIAA2018	205717	broad.mit.edu	37	chr3	113380072	113380072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccaccaggctgattccCgttggaataaacaataattt	7	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113380072	A	A	113380072	3	1	9	1	0	0	0	0	1	0	0	0	8338	652	23	1	6284	1	KIAA2018	3	113380072	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	672	113380072	84642358	4868	13019											
NAA50	80218	broad.mit.edu	37	chr3	113442868	113442868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtcattgtagctgactGgaaagatgacctgattcaat	9	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113442868	T	T	113442868	3	4	9	1	0	0	0	0	1	0	0	0	10220	1348	47	2	442	2	NAA50	3	113442868	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62796	113442868	84579562	4869	13020											
ATP6V1A	523	broad.mit.edu	37	chr3	113503199	113503199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggatatcagcagtcagaccCaaagcatctacatccccaga	7	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113503199	A	A	113503199	3	1	9	1	0	0	0	0	1	0	0	0	1181	595	21	2	350	2	ATP6V1A	3	113503199	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60331	113503199	84519231	4870	13021											
ATP6V1A	523	broad.mit.edu	37	chr3	113524333	113524333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattattcgtgagcacatGggagacatcctctataaact	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113524333	T	T	113524333	3	4	9	1	0	0	0	0	1	0	0	0	1181	1348	47	2	1772	2	ATP6V1A	3	113524333	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21134	113524333	84498097	4871	13022											
GRAMD1C	54762	broad.mit.edu	37	chr3	113634592	113634592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaagactttttatcaacCgtatttttcatatcagtgct	6	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113634592	A	A	113634592	3	1	9	1	0	0	0	0	1	0	0	0	6815	652	23	1	1035	1	GRAMD1C	3	113634592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110259	113634592	84387838	4872	13023											
GRAMD1C	54762	broad.mit.edu	37	chr3	113659166	113659166	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtttaaagggagtgctcCgagactccatagtgatgctt	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113659166	A	A	113659166	2	1	9	1	0	0	0	0	0	0	0	1	6815	644	23	1		1	GRAMD1C	3	113659166	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24574	113659166	84363264	4873	13024											
KIAA1407	57577	broad.mit.edu	37	chr3	113697682	113697682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaatgagatgtatttaaGgtacccttccctatgtcctt	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113697682	T	T	113697682	1	4	9	0	1	0	0	0	0	0	0	0	8299	1015	35	2		2	KIAA1407	3	113697682	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38516	113697682	84324748	4874	13025											
KIAA1407	57577	broad.mit.edu	37	chr3	113699485	113699485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatctgggggataacagtGggacagtgtacctggatgtt	14	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113699485	T	T	113699485	1	4	9	0	1	0	0	0	0	0	0	0	8299	1363	47	2		2	KIAA1407	3	113699485	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1803	113699485	84322945	4875	13026											
KIAA1407	57577	broad.mit.edu	37	chr3	113729825	113729825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattctgtaaagcagtgtcGgagaacttgtttccggttat	10	8	1	1	rs138387426		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113729825	T	T	113729825	2	4	9	1	0	0	0	0	0	0	0	1	8299	1124	39	1		1	KIAA1407	3	113729825	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30340	113729825	84292605	4876	13027											
KIAA1407	57577	broad.mit.edu	37	chr3	113737666	113737666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctttccccagcttaatcCtatgatcaagaatcagcttg	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113737666	A	A	113737666	3	1	9	1	0	0	0	0	1	0	0	0	8299	681	24	2	1828	2	KIAA1407	3	113737666	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7841	113737666	84284764	4877	13028											
KIAA1407	57577	broad.mit.edu	37	chr3	113737705	113737705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccaggcagcgaaatacCgtttttgacactgcagcgga	12	10	0	1	rs149867008	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113737705	A	A	113737705	3	1	9	1	0	0	0	0	1	0	0	0	8299	652	23	1	1867	1	KIAA1407	3	113737705	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	113737705	84284725	4878	13029											
KIAA1407	57577	broad.mit.edu	37	chr3	113750415	113750415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttatcccatctctgatGgagctctttgtcatttatac	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113750415	T	T	113750415	1	4	9	0	1	0	0	0	0	0	0	0	8299	1363	47	2		2	KIAA1407	3	113750415	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12710	113750415	84272015	4879	13030											
KIAA1407	57577	broad.mit.edu	37	chr3	113775216	113775216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctccaaagctctcgattGggatcaccttgggactcggc	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113775216	T	T	113775216	1	4	9	0	1	0	0	0	0	0	0	0	8299	1363	47	2		2	KIAA1407	3	113775216	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24801	113775216	84247214	4880	13031											
KIAA1407	57577	broad.mit.edu	37	chr3	113775307	113775307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccttccctgaggcgccaGgagcattttccaagttcgag	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113775307	T	T	113775307	3	4	9	1	0	0	0	0	1	0	0	0	8299	991	35	2	2871	2	KIAA1407	3	113775307	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	113775307	84247123	4881	13032											
KIAA1407	57577	broad.mit.edu	37	chr3	113775330	113775330	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattttccaagttcgagccCgaacctcggccaaagctgca	9	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113775330	A	A	113775330	1	1	9	0	1	0	0	0	0	0	0	0	8299	667	23	1		1	KIAA1407	3	113775330	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	113775330	84247100	4882	13033											
QTRTD1	79691	broad.mit.edu	37	chr3	113798789	113798789	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtcggccagatgaggtgctCgagtgtattgaaagaggagt	16	5	0	4	rs138101918	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113798789	A	A	113798789	2	1	9	1	0	0	0	0	0	0	0	1	12994	871	31	3		3	QTRTD1	3	113798789	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23459	113798789	84223641	4883	13034											
QTRTD1	79691	broad.mit.edu	37	chr3	113804540	113804540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccaggaggactttaaccCgctggtgagaggatgttcct	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113804540	A	A	113804540	3	1	9	1	0	0	0	0	1	0	0	0	12994	652	23	1	1067	1	QTRTD1	3	113804540	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5751	113804540	84217890	4884	13035											
DRD3	1814	broad.mit.edu	37	chr3	113847601	113847601	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggaaggctttccggaactCgatattgaaggtggtataga	14	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113847601	A	A	113847601	4	1	9	1	0	0	0	0	0	1	0	0	4798	893	31	3	41	3	DRD3	3	113847601	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43061	113847601	84174829	4885	13036											
DRD3	1814	broad.mit.edu	37	chr3	113847634	113847634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatagatcacagggttgaGggcgctattcacgtagccca	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113847634	T	T	113847634	3	4	9	1	0	0	0	0	1	0	0	0	4798	1000	35	2	74	2	DRD3	3	113847634	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33	113847634	84174796	4886	13037											
TIGIT	201633	broad.mit.edu	37	chr3	114014496	114014496	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacggcacaagtgaccCaggtcaactgggagcagcag	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114014496	A	A	114014496	3	1	9	1	0	0	0	0	1	0	0	0	16025	595	21	2	172	2	TIGIT	3	114014496	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	166862	114014496	84007934	4887	13038											
GAP43	2596	broad.mit.edu	37	chr3	115394956	115394956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaattcaggctagcttcCgtggacacataacaaggaaa	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115394956	A	A	115394956	3	1	9	1	0	0	0	0	1	0	0	0	6297	652	23	1	275	1	GAP43	3	115394956	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1380460	115394956	82627474	4888	13039											
IGSF11	152404	broad.mit.edu	37	chr3	118621640	118621640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaagagaaagattggccCaagtcactgaagtggctgac	13	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118621640	A	A	118621640	3	1	9	1	0	0	0	0	1	0	0	0	7668	593	21	2	276	2	IGSF11	3	118621640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3226684	118621640	79400790	4889	13040											
C3orf30	152405	broad.mit.edu	37	chr3	118865721	118865721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgtgcagattgacagtGggtcatccgtcccatctgac	10	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118865721	T	T	118865721	3	4	9	1	0	0	0	0	1	0	0	0	2242	1348	47	2	687	2	C3orf30	3	118865721	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	244081	118865721	79156709	4890	13041											
C3orf30	152405	broad.mit.edu	37	chr3	118869972	118869972	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaaaacaaaagctatGgtatgtgttaggttagtggg	12	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118869972	T	T	118869972	1	4	9	0	1	0	0	0	0	0	0	0	2242	1363	47	2		2	C3orf30	3	118869972	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4251	118869972	79152458	4891	13042											
UPK1B	7348	broad.mit.edu	37	chr3	118909881	118909881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaggtaccaaaacaacaGccctccaaacaatgatgacc	7	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118909881	T	T	118909881	3	4	9	1	0	0	0	0	1	0	0	0	17134	971	34	3	412	3	UPK1B	3	118909881	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39909	118909881	79112549	4892	13043											
UPK1B	7348	broad.mit.edu	37	chr3	118909932	118909932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatggagtcaccaaaacctGggacaggctcatgctccagg	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118909932	T	T	118909932	3	4	9	1	0	0	0	0	1	0	0	0	17134	1357	47	2	463	2	UPK1B	3	118909932	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	118909932	79112498	4893	13044											
UPK1B	7348	broad.mit.edu	37	chr3	118913046	118913046	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccacgaaagagaattttgTatctctcatctgctgacagg	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118913046	C	C	118913046	1	2	9	0	1	0	0	0	0	0	0	0	17134	1653	57	5		5	UPK1B	3	118913046	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	3114	118913046	79109384	4894	13045											
B4GALT4	8702	broad.mit.edu	37	chr3	118943051	118943051	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagggcttctagatagccCacattcaagagtttggctcg	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118943051	A	A	118943051	2	1	9	1	0	0	0	0	0	0	0	1	1278	581	21	2		2	B4GALT4	3	118943051	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30005	118943051	79079379	4895	13046											
B4GALT4	8702	broad.mit.edu	37	chr3	118945754	118945754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttctctctgttccggtGgggaacgaggatggcgaccc	15	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118945754	T	T	118945754	3	4	9	1	0	0	0	0	1	0	0	0	1278	1348	47	2	666	2	B4GALT4	3	118945754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2703	118945754	79076676	4896	13047											
ARHGAP31	57514	broad.mit.edu	37	chr3	119101095	119101095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatatgtcaggcttcacacGggcactgaagtttcttactt	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119101095	T	T	119101095	1	4	9	0	1	0	0	0	0	0	0	0	882	1131	39	1		1	ARHGAP31	3	119101095	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	155341	119101095	78921335	4897	13048											
ARHGAP31	57514	broad.mit.edu	37	chr3	119121083	119121083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctttgcggtatctgtgcCgctccgcgtgtccgcagtca	12	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119121083	A	A	119121083	3	1	9	1	0	0	0	0	1	0	0	0	882	652	23	1	1522	1	ARHGAP31	3	119121083	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19988	119121083	78901347	4898	13049											
ARHGAP31	57514	broad.mit.edu	37	chr3	119132835	119132835	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccaattcagcctattctcGagtcgagtctggggcccttt	10	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119132835	T	T	119132835	4	4	9	1	0	0	0	0	0	1	0	0	882	1059	37	3	2105	3	ARHGAP31	3	119132835	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11752	119132835	78889595	4899	13050											
KTELC1	56983	broad.mit.edu	37	chr3	119190153	119190153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgactcccattctttccCagtgtcatagaagaggatct	8	10	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119190153	A	A	119190153	1	1	9	0	1	0	0	0	0	0	0	0	8655	609	21	2		2	KTELC1	3	119190153	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57318	119190153	78832277	4900	13051											
KTELC1	56983	broad.mit.edu	37	chr3	119205694	119205694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttataggacaagtccagaacGagatcctctcattcttctgt	7	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119205694	T	T	119205694	3	4	9	1	0	0	0	0	1	0	0	0	8655	1058	37	3	679	3	KTELC1	3	119205694	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15541	119205694	78816736	4901	13052											
PLA1A	51365	broad.mit.edu	37	chr3	119327616	119327616	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttttggccccctgtctaGggttttaggaacaaagcctt	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119327616	T	T	119327616	5	4	9	1	0	0	0	0	0	0	1	0	12083	1014	35	2	285	2	PLA1A	3	119327616	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	121922	119327616	78694814	4902	13053											
PLA1A	51365	broad.mit.edu	37	chr3	119347643	119347643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagtttcagtcttccaaccGagtttggaaaaaagaccgga	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119347643	T	T	119347643	3	4	9	1	0	0	0	0	1	0	0	0	12083	1058	37	3	1255	3	PLA1A	3	119347643	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20027	119347643	78674787	4903	13054											
C3orf15	89876	broad.mit.edu	37	chr3	119434495	119434495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcactcagactgattatcGggatgctgacgttcaaacag	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119434495	T	T	119434495	3	4	9	1	0	0	0	0	1	0	0	0	2231	1116	39	1	609	1	C3orf15	3	119434495	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86852	119434495	78587935	4904	13055											
GSK3B	2932	broad.mit.edu	37	chr3	119624640	119624640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatccacaccactatcccCtggaaatattggttgtccta	6	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119624640	A	A	119624640	3	1	9	1	0	0	0	0	1	0	0	0	6890	681	24	2	550	2	GSK3B	3	119624640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	190145	119624640	78397790	4905	13056											
GSK3B	2932	broad.mit.edu	37	chr3	119720956	119720956	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgaatcacaaagtttGgcttgatataccacaccaaa	5	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119720956	T	T	119720956	2	4	9	1	0	0	0	0	0	0	0	1	6890	1335	47	2		2	GSK3B	3	119720956	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96316	119720956	78301474	4906	13057											
GSK3B	2932	broad.mit.edu	37	chr3	119748793	119748793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgggccctagagtgacCacagctatgctctggcttga	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119748793	A	A	119748793	1	1	9	0	1	0	0	0	0	0	0	0	6890	609	21	2		2	GSK3B	3	119748793	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	27837	119748793	78273637	4907	13058											
GPR156	165829	broad.mit.edu	37	chr3	119886705	119886705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgattactgaactaaccCgtgaccgccgctctgggggc	11	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119886705	A	A	119886705	3	1	9	1	0	0	0	0	1	0	0	0	6726	652	23	1	829	1	GPR156	3	119886705	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	137912	119886705	78135725	4908	13059											
LRRC58	116064	broad.mit.edu	37	chr3	120053681	120053681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaatagctaaataagtGggaaacatgaatactgaatt	7	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120053681	T	T	120053681	1	4	9	0	1	0	0	0	0	0	0	0	9101	1363	47	2		2	LRRC58	3	120053681	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	166976	120053681	77968749	4909	13060											
FSTL1	11167	broad.mit.edu	37	chr3	120115769	120115769	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaagtggagaagatgctGggatccagacactggtctgt	15	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120115769	T	T	120115769	1	4	9	0	1	0	0	0	0	0	0	0	6137	1363	47	2		2	FSTL1	3	120115769	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	62088	120115769	77906661	4910	13061											
HGD	3081	broad.mit.edu	37	chr3	120347285	120347285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggctcttgagtggctccCagcacttgtggtagttctca	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120347285	A	A	120347285	3	1	9	1	0	0	0	0	1	0	0	0	7151	595	21	2	61	2	HGD	3	120347285	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	231516	120347285	77675145	4911	13062											
RABL3	285282	broad.mit.edu	37	chr3	120408554	120408554	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaaagggtaaggctgaaGggtagcattttaagatgatt	12	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120408554	T	T	120408554	1	4	9	0	1	0	0	0	0	0	0	0	13080	1015	35	2		2	RABL3	3	120408554	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	61269	120408554	77613876	4912	13063											
RABL3	285282	broad.mit.edu	37	chr3	120417353	120417353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctttgtttcatgaatctGgtccagtttagtccctatta	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120417353	T	T	120417353	3	4	9	1	0	0	0	0	1	0	0	0	13080	1357	47	2	275	2	RABL3	3	120417353	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8799	120417353	77605077	4913	13064											
GTF2E1	2960	broad.mit.edu	37	chr3	120489701	120489701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatttatgcattgcttcGggagacagaggatgtgaact	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120489701	T	T	120489701	3	4	9	1	0	0	0	0	1	0	0	0	6921	1116	39	1	581	1	GTF2E1	3	120489701	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	72348	120489701	77532729	4914	13065											
GTF2E1	2960	broad.mit.edu	37	chr3	120489766	120489766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccacagaaatcccagccCtgaaacagaggtgagtgtag	10	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120489766	A	A	120489766	3	1	9	1	0	0	0	0	1	0	0	0	6921	680	24	2	646	2	GTF2E1	3	120489766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	120489766	77532664	4915	13066											
STXBP5L	9515	broad.mit.edu	37	chr3	120673816	120673816	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggttttcctcatcagccCacagcattagcctttgatcc	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120673816	A	A	120673816	2	1	9	1	0	0	0	0	0	0	0	1	15475	581	21	2		2	STXBP5L	3	120673816	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	184050	120673816	77348614	4916	13067											
STXBP5L	9515	broad.mit.edu	37	chr3	120760551	120760551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttattatattagactcGggagacctggtgttgattgc	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120760551	T	T	120760551	3	4	9	1	0	0	0	0	1	0	0	0	15475	1116	39	1	302	1	STXBP5L	3	120760551	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86735	120760551	77261879	4917	13068											
STXBP5L	9515	broad.mit.edu	37	chr3	120764376	120764376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattctcttaaatttaaccGggaacggtaagaacctatga	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120764376	T	T	120764376	3	4	9	1	0	0	0	0	1	0	0	0	15475	1116	39	1	478	1	STXBP5L	3	120764376	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3825	120764376	77258054	4918	13069											
POLQ	10721	broad.mit.edu	37	chr3	121200666	121200666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagcatgccacctgaatGggatagcaatgagaatattt	9	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121200666	T	T	121200666	1	4	9	0	1	0	0	0	0	0	0	0	12303	1363	47	2		2	POLQ	3	121200666	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	436290	121200666	76821764	4919	13070											
POLQ	10721	broad.mit.edu	37	chr3	121212468	121212468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacccgaaccaggtcacaCagctccctctggatgccaaa	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121212468	A	A	121212468	2	1	9	1	0	0	0	0	0	0	0	1	12303	465	17	3		3	POLQ	3	121212468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11802	121212468	76809962	4920	13071											
POLQ	10721	broad.mit.edu	37	chr3	121238733	121238733	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacctactgtgtccactcCtttcctgccagcacggccaa	6	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121238733	A	A	121238733	4	1	9	1	0	0	0	0	0	1	0	0	12303	690	24	2	6407	2	POLQ	3	121238733	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26265	121238733	76783697	4921	13072											
POLQ	10721	broad.mit.edu	37	chr3	121238873	121238873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagttgccgccaagaccCgaatgagaccttgacgaaag	11	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121238873	A	A	121238873	3	1	9	1	0	0	0	0	1	0	0	0	12303	652	23	1	6547	1	POLQ	3	121238873	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140	121238873	76783557	4922	13073											
POLQ	10721	broad.mit.edu	37	chr3	121260275	121260275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccgcatttccaaaaccCgcttcaaaataagtaattct	3	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121260275	A	A	121260275	3	1	9	1	0	0	0	0	1	0	0	0	12303	652	23	1	7489	1	POLQ	3	121260275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21402	121260275	76762155	4923	13074											
ARGFX	503582	broad.mit.edu	37	chr3	121289590	121289590	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatggccccagagaatccCcagccagaccctttcatcaa	7	15	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121289590	A	A	121289590	2	1	9	1	0	0	0	0	0	0	0	1	861	610	22	2		2	ARGFX	3	121289590	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29315	121289590	76732840	4924	13075											
ARGFX	503582	broad.mit.edu	37	chr3	121303770	121303770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgccctgaagcaatacGgagaaggcataaagaacgta	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121303770	T	T	121303770	3	4	9	1	0	0	0	0	1	0	0	0	861	1116	39	1	237	1	ARGFX	3	121303770	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14180	121303770	76718660	4925	13076											
FBXO40	51725	broad.mit.edu	37	chr3	121340337	121340337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgagggatgcttcaacCgccactgccacattcctgtg	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121340337	A	A	121340337	3	1	9	1	0	0	0	0	1	0	0	0	5806	652	23	1	67	1	FBXO40	3	121340337	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36567	121340337	76682093	4926	13077											
FBXO40	51725	broad.mit.edu	37	chr3	121340508	121340508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgccctctgtccatgtccCgccacaaactggccaagcac	8	18	1	0	rs137929409		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121340508	A	A	121340508	3	1	9	1	0	0	0	0	1	0	0	0	5806	652	23	1	238	1	FBXO40	3	121340508	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	171	121340508	76681922	4927	13078											
FBXO40	51725	broad.mit.edu	37	chr3	121340875	121340875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctaagtcaagaagaacGggaggtgctagccaaaacca	12	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121340875	T	T	121340875	3	4	9	1	0	0	0	0	1	0	0	0	5806	1116	39	1	605	1	FBXO40	3	121340875	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	367	121340875	76681555	4928	13079											
FBXO40	51725	broad.mit.edu	37	chr3	121345660	121345660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagagcacaaaactgaccCgattcttttgactagcatgt	8	9	1	3	rs147521206	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121345660	A	A	121345660	3	1	9	1	0	0	0	0	1	0	0	0	5806	652	23	1	2043	1	FBXO40	3	121345660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4785	121345660	76676770	4929	13080											
HCLS1	3059	broad.mit.edu	37	chr3	121376117	121376117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttttctccagtcctttcGgcacctacttgatgtgttct	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121376117	T	T	121376117	1	4	9	0	1	0	0	0	0	0	0	0	7061	1131	39	1		1	HCLS1	3	121376117	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30457	121376117	76646313	4930	13081											
GOLGB1	2804	broad.mit.edu	37	chr3	121410710	121410710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcctcttggatgagttGgtctttttccaagattatag	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121410710	T	T	121410710	3	4	9	1	0	0	0	0	1	0	0	0	6629	1357	47	2	2329	2	GOLGB1	3	121410710	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34593	121410710	76611720	4931	13082											
GOLGB1	2804	broad.mit.edu	37	chr3	121413513	121413513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatagctcattttttatttGggcatctgtaacatcctgac	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121413513	T	T	121413513	3	4	9	1	0	0	0	0	1	0	0	0	6629	1357	47	2	3977	2	GOLGB1	3	121413513	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2803	121413513	76608917	4932	13083											
GOLGB1	2804	broad.mit.edu	37	chr3	121421286	121421286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaagtagaggcacttgtGggataagaagacagagaatt	12	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121421286	T	T	121421286	1	4	9	0	1	0	0	0	0	0	0	0	6629	1363	47	2		2	GOLGB1	3	121421286	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7773	121421286	76601144	4933	13084											
IQCB1	9657	broad.mit.edu	37	chr3	121508922	121508922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgatactgccactcacctGgatgaactatttcgagcata	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121508922	T	T	121508922	3	4	9	1	0	0	0	0	1	0	0	0	7873	1348	47	2	689	2	IQCB1	3	121508922	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87636	121508922	76513508	4934	13085											
IQCB1	9657	broad.mit.edu	37	chr3	121508959	121508959	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catactcagctgcaattctcGggaaagtctcatggctctct	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121508959	T	T	121508959	2	4	9	1	0	0	0	0	0	0	0	1	7873	1124	39	1		1	IQCB1	3	121508959	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	121508959	76513471	4935	13086											
IQCB1	9657	broad.mit.edu	37	chr3	121547284	121547284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatcaactactacatccCtcaagaacagctgacttact	4	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121547284	A	A	121547284	1	1	9	0	1	0	0	0	0	0	0	0	7873	696	24	2		2	IQCB1	3	121547284	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38325	121547284	76475146	4936	13087											
SLC15A2	6565	broad.mit.edu	37	chr3	121613409	121613409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacctcgaccacctagccCtccaaagaagccatctccgg	6	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121613409	A	A	121613409	3	1	9	1	0	0	0	0	1	0	0	0	14512	681	24	2	88	2	SLC15A2	3	121613409	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66125	121613409	76409021	4937	13088											
SLC15A2	6565	broad.mit.edu	37	chr3	121631924	121631924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggacaggaggcatcaaacCctgtgtggcagcttttggtg	16	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121631924	A	A	121631924	3	1	9	1	0	0	0	0	1	0	0	0	14512	623	22	2	503	2	SLC15A2	3	121631924	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18515	121631924	76390506	4938	13089											
SLC15A2	6565	broad.mit.edu	37	chr3	121631977	121631977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaacatgtaagaatcCtgttattttgtattttcaag	6	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121631977	A	A	121631977	1	1	9	0	1	0	0	0	0	0	0	0	14512	696	24	2		2	SLC15A2	3	121631977	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	121631977	76390453	4939	13090											
SLC15A2	6565	broad.mit.edu	37	chr3	121641932	121641932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgaccagggtactattcCtttatatcccattgcccatg	6	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121641932	A	A	121641932	3	1	9	1	0	0	0	0	1	0	0	0	14512	681	24	2	951	2	SLC15A2	3	121641932	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9955	121641932	76380498	4940	13091											
SLC15A2	6565	broad.mit.edu	37	chr3	121643826	121643826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggttcttatcttcatccCgttgtttgactttgtcattt	6	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121643826	A	A	121643826	3	1	9	1	0	0	0	0	1	0	0	0	14512	652	23	1	1120	1	SLC15A2	3	121643826	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1894	121643826	76378604	4941	13092											
SLC15A2	6565	broad.mit.edu	37	chr3	121643880	121643880	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagtgtggaattaacttctCgtaagtgttcactatgtctg	9	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121643880	A	A	121643880	4	1	9	1	0	0	0	0	0	1	0	0	14512	898	31	3	1174	3	SLC15A2	3	121643880	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	121643880	76378550	4942	13093											
CD86	942	broad.mit.edu	37	chr3	121825277	121825277	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttcattccctgatgttacGagcaatatgaccatcttctg	7	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121825277	T	T	121825277	2	4	9	1	0	0	0	0	0	0	0	1	3073	1045	37	3		3	CD86	3	121825277	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	181397	121825277	76197153	4943	13094											
CD86	942	broad.mit.edu	37	chr3	121825321	121825321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggaaactgacaagacgcGgcttttatcttcacctttct	7	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121825321	T	T	121825321	3	4	9	1	0	0	0	0	1	0	0	0	3073	1116	39	1	691	1	CD86	3	121825321	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	121825321	76197109	4944	13095											
CASR	846	broad.mit.edu	37	chr3	121976009	121976009	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcccagcccttcttccCaacttgacgctgggatacag	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121976009	A	A	121976009	2	1	9	1	0	0	0	0	0	0	0	1	2708	581	21	2		2	CASR	3	121976009	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	150688	121976009	76046421	4945	13096											
CASR	846	broad.mit.edu	37	chr3	121980622	121980622	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaactcatctcccagtactCtgatgaggaagagatccagc	9	11	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121980622	A	A	121980622	3	1	9	1	0	0	0	0	1	0	0	0	2708	913	32	3	750	3	CASR	3	121980622	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4613	121980622	76041808	4946	13097											
CSTA	1475	broad.mit.edu	37	chr3	122060339	122060339	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtattcaaaagtcttccCggacaaaatgaggacttggt	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122060339	A	A	122060339	2	1	9	1	0	0	0	0	0	0	0	1	4015	639	23	1		1	CSTA	3	122060339	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79717	122060339	75962091	4947	13098											
CCDC58	131076	broad.mit.edu	37	chr3	122090588	122090588	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaggaagctgttggaacCgtagtgtttaattcatgtac	11	6	1	0	rs139324458		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122090588	A	A	122090588	2	1	9	1	0	0	0	0	0	0	0	1	2856	639	23	1		1	CCDC58	3	122090588	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30249	122090588	75931842	4948	13099											
KPNA1	3836	broad.mit.edu	37	chr3	122145936	122145936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcttcatcttcggtccCgaagtaatgctcaataagat	8	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122145936	A	A	122145936	3	1	9	1	0	0	0	0	1	0	0	0	8500	652	23	1	107	1	KPNA1	3	122145936	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55348	122145936	75876494	4949	13100											
DTX3L	151636	broad.mit.edu	37	chr3	122289443	122289443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttacagtggggtactctCgcgtattaggagtctcagat	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122289443	A	A	122289443	3	1	9	1	0	0	0	0	1	0	0	0	4836	884	31	3	2091	3	DTX3L	3	122289443	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143507	122289443	75732987	4950	13101											
PARP14	54625	broad.mit.edu	37	chr3	122418621	122418621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccaattaaagtggatcCaacaatgtgggacaccataa	7	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122418621	A	A	122418621	3	1	9	1	0	0	0	0	1	0	0	0	11552	594	21	2	1242	2	PARP14	3	122418621	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129178	122418621	75603809	4951	13102											
HSPBAP1	79663	broad.mit.edu	37	chr3	122459244	122459244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactatcctggttacttgtGgattcaccaagcagtccagc	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122459244	T	T	122459244	3	4	9	1	0	0	0	0	1	0	0	0	7495	1348	47	2	55	2	HSPBAP1	3	122459244	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40623	122459244	75563186	4952	13103											
HSPBAP1	79663	broad.mit.edu	37	chr3	122459941	122459941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgattgcctcttctaccCgggctaggtgatcctcttcc	11	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122459941	A	A	122459941	3	1	9	1	0	0	0	0	1	0	0	0	7495	652	23	1	629	1	HSPBAP1	3	122459941	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	697	122459941	75562489	4953	13104											
DIRC2	84925	broad.mit.edu	37	chr3	122545788	122545788	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgctcagttatcttggGggagcatgtgcatttttagt	11	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122545788	T	T	122545788	2	4	9	1	0	0	0	0	0	0	0	1	4574	1219	43	2		2	DIRC2	3	122545788	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85847	122545788	75476642	4954	13105											
DIRC2	84925	broad.mit.edu	37	chr3	122578976	122578976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttctcctcctgttttcGggagctacactgtcatccac	6	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122578976	T	T	122578976	2	4	9	1	0	0	0	0	0	0	0	1	4574	1103	39	1		1	DIRC2	3	122578976	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33188	122578976	75443454	4955	13106											
DIRC2	84925	broad.mit.edu	37	chr3	122591290	122591290	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcctcctgtattctcctGggagtgttcttgaatagcag	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122591290	T	T	122591290	2	4	9	1	0	0	0	0	0	0	0	1	4574	1335	47	2		2	DIRC2	3	122591290	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12314	122591290	75431140	4956	13107											
DIRC2	84925	broad.mit.edu	37	chr3	122591352	122591352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtggaaactgtctaccCagttccagaaggaattactt	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122591352	A	A	122591352	3	1	9	1	0	0	0	0	1	0	0	0	4574	594	21	2	1259	2	DIRC2	3	122591352	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	122591352	75431078	4957	13108											
DIRC2	84925	broad.mit.edu	37	chr3	122598119	122598119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcttacagagttgtcttGgttcaactggtgccttcccg	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122598119	T	T	122598119	3	4	9	1	0	0	0	0	1	0	0	0	4574	1357	47	2	1365	2	DIRC2	3	122598119	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6767	122598119	75424311	4958	13109											
DIRC2	84925	broad.mit.edu	37	chr3	122598210	122598210	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagactctatcttgatgtGgttgtctccgtttaatagca	9	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122598210	T	T	122598210	2	4	9	1	0	0	0	0	0	0	0	1	4574	1335	47	2		2	DIRC2	3	122598210	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	122598210	75424220	4959	13110											
SEMA5B	54437	broad.mit.edu	37	chr3	122642509	122642509	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggggagccaggcagccctGgggttctcctggtagcgaaa	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122642509	T	T	122642509	2	4	9	1	0	0	0	0	0	0	0	1	14151	1335	47	2		2	SEMA5B	3	122642509	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44299	122642509	75379921	4960	13111											
PDIA5	10954	broad.mit.edu	37	chr3	122829724	122829724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgtatgcaggaggggcGgggagggggtctcatcctgt	19	8	1	0	rs114472074	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122829724	T	T	122829724	1	4	9	0	1	0	0	0	0	0	0	0	11765	1131	39	1		1	PDIA5	3	122829724	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	187215	122829724	75192706	4961	13112											
SEC22A	26984	broad.mit.edu	37	chr3	122964796	122964796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggattgtaggatttatcCttagtcttttatgtggagct	11	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122964796	A	A	122964796	3	1	9	1	0	0	0	0	1	0	0	0	14101	681	24	2	606	2	SEC22A	3	122964796	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	135072	122964796	75057634	4962	13113											
MYLK	4638	broad.mit.edu	37	chr3	123339178	123339178	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctctcacagcattgccCgttttctggaaaatagacac	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123339178	A	A	123339178	2	1	9	1	0	0	0	0	0	0	0	1	10150	639	23	1		1	MYLK	3	123339178	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	374382	123339178	74683252	4963	13114											
MYLK	4638	broad.mit.edu	37	chr3	123419587	123419587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggtcgtcttccgataGggtctttgtactcaccttct	8	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123419587	T	T	123419587	3	4	9	1	0	0	0	0	1	0	0	0	10150	991	35	2	3084	2	MYLK	3	123419587	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80409	123419587	74602843	4964	13115											
MYLK	4638	broad.mit.edu	37	chr3	123452795	123452795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttccggctgaactcttgCggcctgcagggtgatggagc	16	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123452795	A	A	123452795	3	1	9	1	0	0	0	0	1	0	0	0	10150	768	27	3	4796	3	MYLK	3	123452795	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33208	123452795	74569635	4965	13116											
ROPN1	54763	broad.mit.edu	37	chr3	123688991	123688991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactggaaggtgctgaacGggatccggggcgacccacca	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123688991	T	T	123688991	3	4	9	1	0	0	0	0	1	0	0	0	13634	1116	39	1	176	1	ROPN1	3	123688991	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	236196	123688991	74333439	4966	13117											
KALRN	8997	broad.mit.edu	37	chr3	123946846	123946846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcccacagggtcttttcGgaatgatggtttgaaagctt	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123946846	T	T	123946846	3	4	9	1	0	0	0	0	1	0	0	0	8045	1116	39	1	83	1	KALRN	3	123946846	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	257855	123946846	74075584	4967	13118											
KALRN	8997	broad.mit.edu	37	chr3	124149518	124149518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaggttctgggatggatcCgcaatggagagtcaatgctc	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124149518	A	A	124149518	3	1	9	1	0	0	0	0	1	0	0	0	8045	652	23	1	2781	1	KALRN	3	124149518	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	202672	124149518	73872912	4968	13119											
KALRN	8997	broad.mit.edu	37	chr3	124174062	124174062	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttctgattcagctggcCgatagctttgtggaaaaagg	12	7	2	1	rs61747979	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124174062	A	A	124174062	2	1	9	1	0	0	0	0	0	0	0	1	8045	639	23	1		1	KALRN	3	124174062	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24544	124174062	73848368	4969	13120											
KALRN	8997	broad.mit.edu	37	chr3	124379769	124379769	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcttcccctacttgttaGgacttcctgagatacagtga	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124379769	T	T	124379769	5	4	9	1	0	0	0	0	0	0	1	0	8045	1014	35	2	6543	2	KALRN	3	124379769	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	205707	124379769	73642661	4970	13121											
KALRN	8997	broad.mit.edu	37	chr3	124397075	124397075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactctacgcatgagaaagcGggcggaagtggagaacacgg	15	8	1	2	rs35729834		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124397075	T	T	124397075	3	4	9	1	0	0	0	0	1	0	0	0	8045	1116	39	1	7586	1	KALRN	3	124397075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17306	124397075	73625355	4971	13122											
KALRN	8997	broad.mit.edu	37	chr3	124413201	124413201	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccagaattccttgtgccCttggtggatgtgacctgctt	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124413201	A	A	124413201	2	1	9	1	0	0	0	0	0	0	0	1	8045	668	24	2		2	KALRN	3	124413201	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16126	124413201	73609229	4972	13123											
KALRN	8997	broad.mit.edu	37	chr3	124414914	124414914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccatgggccaaccctatGggattttacccagcagtcaa	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124414914	T	T	124414914	1	4	9	0	1	0	0	0	0	0	0	0	8045	1363	47	2		2	KALRN	3	124414914	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1713	124414914	73607516	4973	13124											
KALRN	8997	broad.mit.edu	37	chr3	124437797	124437797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacctgctcattgacctacGgattccagtgcctcgagtga	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124437797	T	T	124437797	3	4	9	1	0	0	0	0	1	0	0	0	8045	1116	39	1	8835	1	KALRN	3	124437797	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22883	124437797	73584633	4974	13125											
UMPS	7372	broad.mit.edu	37	chr3	124449388	124449388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgcaggctttcaagtttGgggacttcgtgctgaagagc	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124449388	T	T	124449388	3	4	9	1	0	0	0	0	1	0	0	0	17107	1348	47	2	72	2	UMPS	3	124449388	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11591	124449388	73573042	4975	13126											
UMPS	7372	broad.mit.edu	37	chr3	124461053	124461053	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggttttatttctggctccCgagtaagcatgaaaccagaa	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124461053	A	A	124461053	2	1	9	1	0	0	0	0	0	0	0	1	17107	644	23	1		1	UMPS	3	124461053	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11665	124461053	73561377	4976	13127											
ITGB5	3693	broad.mit.edu	37	chr3	124492739	124492739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatggcacttgcattcccCgcagtgacactcgccatggc	10	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124492739	A	A	124492739	3	1	9	1	0	0	0	0	1	0	0	0	7968	652	23	1	705	1	ITGB5	3	124492739	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31686	124492739	73529691	4977	13128											
ITGB5	3693	broad.mit.edu	37	chr3	124515251	124515251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctgagcagaggactccCttgttcctggcacaggagaa	11	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124515251	A	A	124515251	3	1	9	1	0	0	0	0	1	0	0	0	7968	680	24	2	746	2	ITGB5	3	124515251	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22512	124515251	73507179	4978	13129											
ITGB5	3693	broad.mit.edu	37	chr3	124527876	124527876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgagacttaccgtgtccCcaatcttcagaccctcacac	8	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124527876	A	A	124527876	3	1	9	1	0	0	0	0	1	0	0	0	7968	623	22	2	1171	2	ITGB5	3	124527876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12625	124527876	73494554	4979	13130											
ITGB5	3693	broad.mit.edu	37	chr3	124567130	124567130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcccacccttaagtaccCaacagaagggcaactggtca	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124567130	A	A	124567130	1	1	9	0	1	0	0	0	0	0	0	0	7968	609	21	2		2	ITGB5	3	124567130	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39254	124567130	73455300	4980	13131											
ITGB5	3693	broad.mit.edu	37	chr3	124592318	124592318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcaccaggcacattttGggtggattagcagacattct	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124592318	T	T	124592318	3	4	9	1	0	0	0	0	1	0	0	0	7968	1348	47	2	2324	2	ITGB5	3	124592318	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25188	124592318	73430112	4981	13132											
HEG1	57493	broad.mit.edu	37	chr3	124732073	124732073	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgactttctcttggtgtgGggtgctctggctcttaaggt	13	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124732073	C	C	124732073	3	2	9	1	0	0	0	0	1	0	0	0	7111	1232	43	4	1843	4	HEG1	3	124732073	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139755	124732073	73290357	4982	13133											
HEG1	57493	broad.mit.edu	37	chr3	124732577	124732577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggctgagcatattcccCgtcataggatgagatgttac	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124732577	A	A	124732577	3	1	9	1	0	0	0	0	1	0	0	0	7111	652	23	1	2347	1	HEG1	3	124732577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	504	124732577	73289853	4983	13134											
ZNF148	7707	broad.mit.edu	37	chr3	125032153	125032153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataaaggaattacttacaGggacattaagtgcatactgt	8	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125032153	T	T	125032153	3	4	9	1	0	0	0	0	1	0	0	0	17860	1014	35	2	2076	2	ZNF148	3	125032153	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	299576	125032153	72990277	4984	13135											
SNX4	8723	broad.mit.edu	37	chr3	125216720	125216720	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgtctctacaaaggatGggatgtgaagcaatcctcaa	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125216720	T	T	125216720	2	4	9	1	0	0	0	0	0	0	0	1	15018	1335	47	2		2	SNX4	3	125216720	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	184567	125216720	72805710	4985	13136											
OSBPL11	114885	broad.mit.edu	37	chr3	125250832	125250832	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatttcagattctctcagcGagtctgtcacatttttccac	5	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125250832	T	T	125250832	4	4	9	1	0	0	0	0	0	1	0	0	11370	1059	37	3	200	3	OSBPL11	3	125250832	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34112	125250832	72771598	4986	13137											
ALDH1L1	10840	broad.mit.edu	37	chr3	125826018	125826018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagatgatcatgacaggccCgaaggactcctccttggcta	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125826018	A	A	125826018	3	1	9	1	0	0	0	0	1	0	0	0	494	652	23	1	301	1	ALDH1L1	3	125826018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	575186	125826018	72196412	4987	13138											
ALDH1L1	10840	broad.mit.edu	37	chr3	125876338	125876338	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacccccctttcttatctcCgtgaatgagggtcctaggaa	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125876338	A	A	125876338	4	1	9	1	0	0	0	0	0	1	0	0	494	661	23	1	2412	1	ALDH1L1	3	125876338	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50320	125876338	72146092	4988	13139											
ZXDC	79364	broad.mit.edu	37	chr3	126178509	126178509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcacctgcattgctcccCgctcctctctgctttttttc	5	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126178509	A	A	126178509	2	1	9	1	0	0	0	0	0	0	0	1	18381	639	23	1		1	ZXDC	3	126178509	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	302171	126178509	71843921	4989	13140											
ZXDC	79364	broad.mit.edu	37	chr3	126180923	126180923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcagagcctcatccgaccCacctgcagaaccactagcat	7	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126180923	A	A	126180923	3	1	9	1	0	0	0	0	1	0	0	0	18381	594	21	2	1020	2	ZXDC	3	126180923	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2414	126180923	71841507	4990	13141											
ZXDC	79364	broad.mit.edu	37	chr3	126189669	126189669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatttacctttaaacaacGgaaacttaacaggataaatg	5	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126189669	T	T	126189669	1	4	9	0	1	0	0	0	0	0	0	0	18381	1131	39	1		1	ZXDC	3	126189669	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8746	126189669	71832761	4991	13142											
UROC1	131669	broad.mit.edu	37	chr3	126208160	126208160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaaatgttggaggtctccCtaaaggggctgtcggtgccg	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126208160	A	A	126208160	3	1	9	1	0	0	0	0	1	0	0	0	17154	681	24	2	379	2	UROC1	3	126208160	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18491	126208160	71814270	4992	13143											
UROC1	131669	broad.mit.edu	37	chr3	126216957	126216957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtgaccgccaggtcctGggggtcccccgatgtgcaca	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126216957	T	T	126216957	3	4	9	1	0	0	0	0	1	0	0	0	17154	1357	47	2	683	2	UROC1	3	126216957	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8797	126216957	71805473	4993	13144											
UROC1	131669	broad.mit.edu	37	chr3	126219568	126219568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtccttgaacacagcaGggttggaggccatgaggctc	14	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126219568	T	T	126219568	3	4	9	1	0	0	0	0	1	0	0	0	17154	1000	35	2	955	2	UROC1	3	126219568	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2611	126219568	71802862	4994	13145											
UROC1	131669	broad.mit.edu	37	chr3	126226556	126226556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggctaacggggaaacacGgtgtaaacagactgaaatag	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126226556	T	T	126226556	1	4	9	0	1	0	0	0	0	0	0	0	17154	1131	39	1		1	UROC1	3	126226556	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6988	126226556	71795874	4995	13146											
PLXNA1	5361	broad.mit.edu	37	chr3	126708343	126708343	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgagttccccattggctgcGagcaggcgggtgtggagtac	16	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126708343	T	T	126708343	4	4	9	1	0	0	0	0	0	1	0	0	12214	1059	37	3	909	3	PLXNA1	3	126708343	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	481787	126708343	71314087	4996	13147											
PLXNA1	5361	broad.mit.edu	37	chr3	126736642	126736642	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcccgactcaactacacGgtgctcatcggctccacacc	6	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126736642	T	T	126736642	2	4	9	1	0	0	0	0	0	0	0	1	12214	1103	39	1		1	PLXNA1	3	126736642	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28299	126736642	71285788	4997	13148											
MCM2	4171	broad.mit.edu	37	chr3	127318251	127318251	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccctggccgaagctccCggcgtactgatgccctcacc	10	19	1	1	rs144051770		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127318251	A	A	127318251	2	1	9	1	0	0	0	0	0	0	0	1	9479	643	23	1		1	MCM2	3	127318251	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	581609	127318251	70704179	4998	13149											
MCM2	4171	broad.mit.edu	37	chr3	127339925	127339925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctgcagacttttgccCgctacctttcattccggcgt	7	14	1	1	rs138865006		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127339925	A	A	127339925	3	1	9	1	0	0	0	0	1	0	0	0	9479	652	23	1	2516	1	MCM2	3	127339925	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21674	127339925	70682505	4999	13150											
MCM2	4171	broad.mit.edu	37	chr3	127340015	127340015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgacatatcagcgcaacCgctttggggcccagcaggac	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127340015	A	A	127340015	3	1	9	1	0	0	0	0	1	0	0	0	9479	652	23	1	2606	1	MCM2	3	127340015	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	127340015	70682415	5000	13151											
ABTB1	80325	broad.mit.edu	37	chr3	127396318	127396318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccccagggtgatctttGggagctgcccttcccttgtc	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127396318	T	T	127396318	3	4	9	1	0	0	0	0	1	0	0	0	102	1357	47	2	807	2	ABTB1	3	127396318	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56303	127396318	70626112	5001	13152											
MGLL	11343	broad.mit.edu	37	chr3	127413999	127413999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacaccttcagccctgccCggcagatcagggggtctgag	13	14	3	2	rs1804711		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127413999	A	A	127413999	3	1	9	1	0	0	0	0	1	0	0	0	9649	652	23	1	314	1	MGLL	3	127413999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17681	127413999	70608431	5002	13153											
SEC61A1	29927	broad.mit.edu	37	chr3	127778995	127778995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcgtgtatgtgatgaccGggatgtatggggacccttct	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127778995	T	T	127778995	3	4	9	1	0	0	0	0	1	0	0	0	14113	1116	39	1	425	1	SEC61A1	3	127778995	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	364996	127778995	70243435	5003	13154											
SEC61A1	29927	broad.mit.edu	37	chr3	127786347	127786347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagaatcttttggctcCgtgttagaagacccggtcca	9	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127786347	A	A	127786347	2	1	9	1	0	0	0	0	0	0	0	1	14113	639	23	1		1	SEC61A1	3	127786347	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7352	127786347	70236083	5004	13155											
SEC61A1	29927	broad.mit.edu	37	chr3	127788509	127788509	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccctgctcttctgagccCgtctcccggacaggttgagg	14	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127788509	A	A	127788509	1	1	9	0	1	0	0	0	0	0	0	0	14113	667	23	1		1	SEC61A1	3	127788509	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	2162	127788509	70233921	5005	13156											
RUVBL1	8607	broad.mit.edu	37	chr3	127820371	127820371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatggcaaacaaatcagGgacaatgctgtgtcccaagg	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127820371	T	T	127820371	1	4	9	0	1	0	0	0	0	0	0	0	13863	1247	43	2		2	RUVBL1	3	127820371	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31862	127820371	70202059	5006	13157											
RUVBL1	8607	broad.mit.edu	37	chr3	127820408	127820408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaggcattaccttcacGgccccactgttggcttcaat	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127820408	T	T	127820408	2	4	9	1	0	0	0	0	0	0	0	1	13863	1103	39	1		1	RUVBL1	3	127820408	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	127820408	70202022	5007	13158											
RUVBL1	8607	broad.mit.edu	37	chr3	127820454	127820454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacatctccagcttctactCgctctttctgcaaactttca	3	15	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127820454	A	A	127820454	3	1	9	1	0	0	0	0	1	0	0	0	13863	884	31	3	847	3	RUVBL1	3	127820454	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46	127820454	70201976	5008	13159											
DNAJB8	165721	broad.mit.edu	37	chr3	128181482	128181482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctccacgcgctcctgccCgttctccacgatgcgcttgg	9	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128181482	A	A	128181482	3	1	9	1	0	0	0	0	1	0	0	0	4666	652	23	1	95	1	DNAJB8	3	128181482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	361028	128181482	69840948	5009	13160											
RAB7A	7879	broad.mit.edu	37	chr3	128532231	128532231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaactggacaagaatgaccGggccaaggcctcggcagaaa	12	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128532231	T	T	128532231	3	4	9	1	0	0	0	0	1	0	0	0	13062	1116	39	1	608	1	RAB7A	3	128532231	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	350749	128532231	69490199	5010	13161											
ACAD9	28976	broad.mit.edu	37	chr3	128623318	128623318	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccaacctggctttccCgactgctccatcgaggcagc	10	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128623318	A	A	128623318	2	1	9	1	0	0	0	0	0	0	0	1	111	639	23	1		1	ACAD9	3	128623318	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	91087	128623318	69399112	5011	13162											
ACAD9	28976	broad.mit.edu	37	chr3	128627066	128627066	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggatgtacatcgccctgacGggtctgcagcatgccggccg	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128627066	T	T	128627066	2	4	9	1	0	0	0	0	0	0	0	1	111	1103	39	1		1	ACAD9	3	128627066	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3748	128627066	69395364	5012	13163											
KIAA1257	57501	broad.mit.edu	37	chr3	128696935	128696935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttcttgttttcctggcGgatgttcctggttcgactct	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128696935	T	T	128696935	3	4	9	1	0	0	0	0	1	0	0	0	8288	1116	39	1	484	1	KIAA1257	3	128696935	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69869	128696935	69325495	5013	13164											
RAB43	339122	broad.mit.edu	37	chr3	128878016	128878016	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggccttttctgcatttcGggcctggaaagagagaaaag	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128878016	T	T	128878016	2	4	9	1	0	0	0	0	0	0	0	1	13053	1124	39	1		1	RAB43	3	128878016	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	181081	128878016	69144414	5014	13165											
CNBP	7555	broad.mit.edu	37	chr3	128889324	128889324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcctcaattgtgcattccCgtgcaaggtgccctgactcg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128889324	A	A	128889324	3	1	9	1	0	0	0	0	1	0	0	0	3624	652	23	1	31	1	CNBP	3	128889324	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11308	128889324	69133106	5015	13166											
COPG	22820	broad.mit.edu	37	chr3	128971732	128971732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagcccacactccgtcGgatgtgctacttgaccatca	7	17	1	1	rs140716300	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128971732	T	T	128971732	3	4	9	1	0	0	0	0	1	0	0	0	3763	1116	39	1	275	1	COPG	3	128971732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82408	128971732	69050698	5016	13167											
COPG	22820	broad.mit.edu	37	chr3	128979278	128979278	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggggttggaggaagctgtCtgatccaactggaggtgtgt	18	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128979278	G	G	128979278	1	3	9	0	1	0	0	0	0	0	0	0	3763	928	32	4		4	COPG	3	128979278	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7546	128979278	69043152	5017	13168											
MBD4	8930	broad.mit.edu	37	chr3	129156638	129156638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactctttcccatccacatGggacagacttacggcattct	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129156638	T	T	129156638	3	4	9	1	0	0	0	0	1	0	0	0	9439	1348	47	2	1510	2	MBD4	3	129156638	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	177360	129156638	68865792	5018	13169											
IFT122	55764	broad.mit.edu	37	chr3	129168698	129168698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctaattgtctttttccCttgtcttctgttcagtataa	5	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129168698	A	A	129168698	1	1	9	0	1	0	0	0	0	0	0	0	7625	696	24	2		2	IFT122	3	129168698	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12060	129168698	68853732	5019	13170											
IFT122	55764	broad.mit.edu	37	chr3	129188271	129188271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaacaggtatgtagccCtgtacaaatccaattgcagt	9	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129188271	A	A	129188271	1	1	9	0	1	0	0	0	0	0	0	0	7625	696	24	2		2	IFT122	3	129188271	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19573	129188271	68834159	5020	13171											
IFT122	55764	broad.mit.edu	37	chr3	129195501	129195501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgacagttctctcacccCgcaggtggtcggctgccagg	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129195501	A	A	129195501	1	1	9	0	1	0	0	0	0	0	0	0	7625	667	23	1		1	IFT122	3	129195501	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7230	129195501	68826929	5021	13172											
IFT122	55764	broad.mit.edu	37	chr3	129207165	129207165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaccagattgcttgcttGggtgtcacagacactgattg	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129207165	T	T	129207165	3	4	9	1	0	0	0	0	1	0	0	0	7625	1339	47	2	2136	2	IFT122	3	129207165	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11664	129207165	68815265	5022	13173											
IFT122	55764	broad.mit.edu	37	chr3	129211008	129211008	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcagagtacaagacctcCgatatttagagctcatcagc	7	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129211008	A	A	129211008	2	1	9	1	0	0	0	0	0	0	0	1	7625	644	23	1		1	IFT122	3	129211008	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3843	129211008	68811422	5023	13174											
IFT122	55764	broad.mit.edu	37	chr3	129238004	129238004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatcggagatgaggaccCgttcacagctaagctgagct	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129238004	A	A	129238004	3	1	9	1	0	0	0	0	1	0	0	0	7625	652	23	1	3716	1	IFT122	3	129238004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26996	129238004	68784426	5024	13175											
PLXND1	23129	broad.mit.edu	37	chr3	129278492	129278492	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagatgtgtagggtgtcGgggtcggagattcccctctt	14	9	1	2	rs75141161		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129278492	T	T	129278492	2	4	9	1	0	0	0	0	0	0	0	1	12222	1103	39	1		1	PLXND1	3	129278492	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40488	129278492	68743938	5025	13176											
PLXND1	23129	broad.mit.edu	37	chr3	129289738	129289738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttggcctatcttgaccCggtactcgtgactctggagc	10	12	2	2	rs147110369		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129289738	A	A	129289738	3	1	9	1	0	0	0	0	1	0	0	0	12222	652	23	1	2208	1	PLXND1	3	129289738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11246	129289738	68732692	5026	13177											
PLXND1	23129	broad.mit.edu	37	chr3	129289910	129289910	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgagggtgagaggctccccGgggtggtgcttgatccactt	16	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129289910	T	T	129289910	2	4	9	1	0	0	0	0	0	0	0	1	12222	1103	39	1		1	PLXND1	3	129289910	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	172	129289910	68732520	5027	13178											
TMCC1	23023	broad.mit.edu	37	chr3	129373822	129373822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catactaacctggatgtcccGggcccgttcataggactgat	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129373822	T	T	129373822	2	4	9	1	0	0	0	0	0	0	0	1	16115	1115	39	1		1	TMCC1	3	129373822	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83912	129373822	68648608	5028	13179											
TMCC1	23023	broad.mit.edu	37	chr3	129389858	129389858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaagacttgcttgatgcGggcagcctgctgtttgtctg	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129389858	T	T	129389858	3	4	9	1	0	0	0	0	1	0	0	0	16115	1116	39	1	1147	1	TMCC1	3	129389858	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16036	129389858	68632572	5029	13180											
TMCC1	23023	broad.mit.edu	37	chr3	129547210	129547210	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaataactgttcactgccCgaaggctccatcagtagact	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129547210	A	A	129547210	2	1	9	1	0	0	0	0	0	0	0	1	16115	639	23	1		1	TMCC1	3	129547210	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	157352	129547210	68475220	5030	13181											
TRH	7200	broad.mit.edu	37	chr3	129695776	129695776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcttgcatatgctgtccCgaagcggcagcacccaggca	12	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129695776	A	A	129695776	3	1	9	1	0	0	0	0	1	0	0	0	16602	652	23	1	452	1	TRH	3	129695776	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148566	129695776	68326654	5031	13182											
COL6A6	131873	broad.mit.edu	37	chr3	130287020	130287020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcagattggaccagatcGggtgcaaattggtgtagtcc	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130287020	T	T	130287020	3	4	9	1	0	0	0	0	1	0	0	0	3735	1116	39	1	1991	1	COL6A6	3	130287020	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	591244	130287020	67735410	5032	13183											
COL6A6	131873	broad.mit.edu	37	chr3	130287482	130287482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcactagcaggactatcCgaacaacagatgtctttttt	6	10	2	1	rs73868912	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130287482	A	A	130287482	1	1	9	0	1	0	0	0	0	0	0	0	3735	667	23	1		1	COL6A6	3	130287482	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	462	130287482	67734948	5033	13184											
COL6A6	131873	broad.mit.edu	37	chr3	130300613	130300613	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatggaaaaatattctccCaagtttgagatctacagtga	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130300613	A	A	130300613	2	1	9	1	0	0	0	0	0	0	0	1	3735	581	21	2		2	COL6A6	3	130300613	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13131	130300613	67721817	5034	13185											
COL6A6	131873	broad.mit.edu	37	chr3	130311932	130311932	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggaaaatggaattgacGgattaaacggagaacaggta	14	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130311932	T	T	130311932	4	4	9	1	0	0	0	0	0	1	0	0	3735	1117	39	1	4457	1	COL6A6	3	130311932	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11319	130311932	67710498	5035	13186											
PIK3R4	30849	broad.mit.edu	37	chr3	130405028	130405028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagtggcattcaaaaccCagccaatgacttgaaagtta	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130405028	A	A	130405028	1	1	9	0	1	0	0	0	0	0	0	0	12016	609	21	2		2	PIK3R4	3	130405028	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	93096	130405028	67617402	5036	13187											
PIK3R4	30849	broad.mit.edu	37	chr3	130452744	130452744	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccttaggctctccttcGgctttttctggcagatcatg	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130452744	T	T	130452744	2	4	9	1	0	0	0	0	0	0	0	1	12016	1103	39	1		1	PIK3R4	3	130452744	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47716	130452744	67569686	5037	13188											
PIK3R4	30849	broad.mit.edu	37	chr3	130452802	130452802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgttgcccaaatccttcCgtataaccagaatacgctca	5	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130452802	A	A	130452802	3	1	9	1	0	0	0	0	1	0	0	0	12016	652	23	1	3104	1	PIK3R4	3	130452802	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	130452802	67569628	5038	13189											
PIK3R4	30849	broad.mit.edu	37	chr3	130463450	130463450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtggcaaacatcccacCatcaacaaaacgttcaggag	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130463450	A	A	130463450	3	1	9	1	0	0	0	0	1	0	0	0	12016	594	21	2	3539	2	PIK3R4	3	130463450	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10648	130463450	67558980	5039	13190											
ATP2C1	27032	broad.mit.edu	37	chr3	130686016	130686016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttggctataatcaatttGgggaagtgattgttgatggt	14	2	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130686016	T	T	130686016	3	4	9	1	0	0	0	0	1	0	0	0	1147	1348	47	2	1204	2	ATP2C1	3	130686016	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	222566	130686016	67336414	5040	13191											
ASTE1	28990	broad.mit.edu	37	chr3	130742997	130742997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgtcttgtccagatgtGgtgaggcatttaaaagaagc	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130742997	T	T	130742997	3	4	9	1	0	0	0	0	1	0	0	0	1066	1348	47	2	901	2	ASTE1	3	130742997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56981	130742997	67279433	5041	13192											
NEK11	79858	broad.mit.edu	37	chr3	130828742	130828742	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtttatccagctgctgctGggagttgactacatgcatga	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130828742	C	C	130828742	2	2	9	1	0	0	0	0	0	0	0	1	10418	1335	47	4		4	NEK11	3	130828742	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85745	130828742	67193688	5042	13193											
NEK11	79858	broad.mit.edu	37	chr3	130871301	130871301	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggctccaatttcttatcCattgttttaaaaattgttga	6	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130871301	A	A	130871301	2	1	9	1	0	0	0	0	0	0	0	1	10418	581	21	2		2	NEK11	3	130871301	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42559	130871301	67151129	5043	13194											
MRPL3	11222	broad.mit.edu	37	chr3	131181806	131181806	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcataatcaaagaaatactCgctactacattttctaatgt	3	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131181806	A	A	131181806	1	1	9	0	1	0	0	0	0	0	0	0	9887	899	31	3		3	MRPL3	3	131181806	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	310505	131181806	66840624	5044	13195											
CPNE4	131034	broad.mit.edu	37	chr3	131300568	131300568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagctgagtctttcaataaGgccaagctcctaggtgctgc	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131300568	T	T	131300568	1	4	9	0	1	0	0	0	0	0	0	0	3846	1015	35	2		2	CPNE4	3	131300568	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	118762	131300568	66721862	5045	13196											
ACPP	55	broad.mit.edu	37	chr3	132086600	132086600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatatctgctgtcctaatGgtactactgtttatccacat	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132086600	T	T	132086600	3	4	9	1	0	0	0	0	1	0	0	0	167	1348	47	2	1256	2	ACPP	3	132086600	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	786032	132086600	65935830	5046	13197											
DNAJC13	23317	broad.mit.edu	37	chr3	132211315	132211315	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatttcacacctcgtcttcaGagtaacacaagagcacttta	6	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132211315	T	T	132211315	3	4	9	1	0	0	0	0	1	0	0	0	4672	933	33	3	3807	3	DNAJC13	3	132211315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	124715	132211315	65811115	5047	13198											
DNAJC13	23317	broad.mit.edu	37	chr3	132219738	132219738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatcaaggatctctgtcGggtactatattttggcaagg	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132219738	T	T	132219738	3	4	9	1	0	0	0	0	1	0	0	0	4672	1116	39	1	4667	1	DNAJC13	3	132219738	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8423	132219738	65802692	5048	13199											
DNAJC13	23317	broad.mit.edu	37	chr3	132229857	132229857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagttctttcttttgctatGgagttatttcttagggcacc	8	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132229857	T	T	132229857	1	4	9	0	1	0	0	0	0	0	0	0	4672	1363	47	2		2	DNAJC13	3	132229857	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10119	132229857	65792573	5049	13200											
ACAD11	84129	broad.mit.edu	37	chr3	132349208	132349208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataaagaatataaaacccGgaagactggaaaacattgtc	9	6	0	2	rs2305628	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132349208	T	T	132349208	1	4	9	0	1	0	0	0	0	0	0	0	109	1131	39	1		1	ACAD11	3	132349208	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	119351	132349208	65673222	5050	13201											
NPHP3	27031	broad.mit.edu	37	chr3	132407556	132407556	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagcagtatatggatggtcCgcaccataagcattttctga	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132407556	A	A	132407556	2	1	9	1	0	0	0	0	0	0	0	1	10675	639	23	1		1	NPHP3	3	132407556	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58348	132407556	65614874	5051	13202											
NPHP3	27031	broad.mit.edu	37	chr3	132409977	132409977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctaagaaacagaaataaGgacacaaaggtagtgtgttg	11	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132409977	T	T	132409977	1	4	9	0	1	0	0	0	0	0	0	0	10675	1015	35	2		2	NPHP3	3	132409977	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2421	132409977	65612453	5052	13203											
TMEM108	66000	broad.mit.edu	37	chr3	133098695	133098695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccttcaggcactccccCgggaaccatggtgacagcac	9	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133098695	A	A	133098695	3	1	9	1	0	0	0	0	1	0	0	0	16147	652	23	1	146	1	TMEM108	3	133098695	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	688718	133098695	64923735	5053	13204											
TMEM108	66000	broad.mit.edu	37	chr3	133098814	133098814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggcaacaccgacacccCgtgcagaggggcaccctcct	10	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133098814	A	A	133098814	3	1	9	1	0	0	0	0	1	0	0	0	16147	652	23	1	265	1	TMEM108	3	133098814	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	119	133098814	64923616	5054	13205											
TMEM108	66000	broad.mit.edu	37	chr3	133109037	133109037	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatagctgtcctgctgacGgtgtgctgcatgaagaggaa	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133109037	T	T	133109037	2	4	9	1	0	0	0	0	0	0	0	1	16147	1103	39	1		1	TMEM108	3	133109037	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10223	133109037	64913393	5055	13206											
TOPBP1	11073	broad.mit.edu	37	chr3	133358855	133358855	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcgtctgctctctttccCgttctagcagtctccaacag	6	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133358855	A	A	133358855	2	1	9	1	0	0	0	0	0	0	0	1	16493	639	23	1		1	TOPBP1	3	133358855	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	249818	133358855	64663575	5056	13207											
RAB6B	51560	broad.mit.edu	37	chr3	133583484	133583484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaatcagagacgtcttccCgactgcaaaacaacaaggag	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133583484	A	A	133583484	3	1	9	1	0	0	0	0	1	0	0	0	13060	652	23	1	581	1	RAB6B	3	133583484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	224629	133583484	64438946	5057	13208											
SLCO2A1	6578	broad.mit.edu	37	chr3	133657303	133657303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaacaagaactgcacccCgatggcaaatgacttttcct	6	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133657303	A	A	133657303	3	1	9	1	0	0	0	0	1	0	0	0	14840	652	23	1	283	1	SLCO2A1	3	133657303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73819	133657303	64365127	5058	13209											
SLCO2A1	6578	broad.mit.edu	37	chr3	133672567	133672567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagagcccagcaggtaccCgaaagccggtccaaatacag	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133672567	A	A	133672567	3	1	9	1	0	0	0	0	1	0	0	0	14840	652	23	1	1307	1	SLCO2A1	3	133672567	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15264	133672567	64349863	5059	13210											
AMOTL2	51421	broad.mit.edu	37	chr3	134085181	134085181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcactgtccatcttgttcCgcatggtcttctccagggcc	8	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134085181	A	A	134085181	3	1	9	1	0	0	0	0	1	0	0	0	584	652	23	1	1240	1	AMOTL2	3	134085181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	412614	134085181	63937249	5060	13211											
KY	339855	broad.mit.edu	37	chr3	134322395	134322395	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtctggccttggccctttGggagggtaagaccggggcac	17	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134322395	T	T	134322395	1	4	9	0	1	0	0	0	0	0	0	0	8658	1363	47	2		2	KY	3	134322395	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	237214	134322395	63700035	5061	13212											
EPHB1	2047	broad.mit.edu	37	chr3	134670598	134670598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctttgggcctcttactcGgaatggtttttacctcgctt	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134670598	T	T	134670598	3	4	9	1	0	0	0	0	1	0	0	0	5216	1116	39	1	519	1	EPHB1	3	134670598	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	348203	134670598	63351832	5062	13213											
EPHB1	2047	broad.mit.edu	37	chr3	134670657	134670657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtctcttctttctgtcCgtgtcttcttcaaaaagtgt	7	9	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134670657	A	A	134670657	3	1	9	1	0	0	0	0	1	0	0	0	5216	652	23	1	578	1	EPHB1	3	134670657	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	134670657	63351773	5063	13214											
EPHB1	2047	broad.mit.edu	37	chr3	134670813	134670813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcaaactctactgcaacGgggatggggaatggatggtg	14	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134670813	T	T	134670813	3	4	9	1	0	0	0	0	1	0	0	0	5216	1116	39	1	734	1	EPHB1	3	134670813	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	156	134670813	63351617	5064	13215											
EPHB1	2047	broad.mit.edu	37	chr3	134851494	134851494	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgcaccagaggcagacaaGagagctgccggacaaggaag	14	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134851494	A	A	134851494	1	1	9	0	1	0	0	0	0	0	0	0	5216	957	33	4		4	EPHB1	3	134851494	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	180681	134851494	63170936	5065	13216											
EPHB1	2047	broad.mit.edu	37	chr3	134885789	134885789	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttttatccacaggaaacGggcttatagcaaagaggctg	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134885789	C	C	134885789	3	2	9	1	0	0	0	0	1	0	0	0	5216	1116	39	4	1734	4	EPHB1	3	134885789	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34295	134885789	63136641	5066	13217											
EPHB1	2047	broad.mit.edu	37	chr3	134885869	134885869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagtagaaagcagagaccCggtgtctgacccccacaggc	12	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134885869	A	A	134885869	1	1	9	0	1	0	0	0	0	0	0	0	5216	667	23	1		1	EPHB1	3	134885869	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	134885869	63136561	5067	13218											
EPHB1	2047	broad.mit.edu	37	chr3	134898669	134898669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacaaccatgtcctctttGggatgttaaccctgcttatc	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134898669	T	T	134898669	1	4	9	0	1	0	0	0	0	0	0	0	5216	1363	47	2		2	EPHB1	3	134898669	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12800	134898669	63123761	5068	13219											
EPHB1	2047	broad.mit.edu	37	chr3	134898764	134898764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatcccaacgaagctgtcCgggagtttgccaaggagatt	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134898764	A	A	134898764	2	1	9	1	0	0	0	0	0	0	0	1	5216	643	23	1		1	EPHB1	3	134898764	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	134898764	63123666	5069	13220											
EPHB1	2047	broad.mit.edu	37	chr3	134920325	134920325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttattacagcaaaatgacGggcagttcaccgtgatccag	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134920325	T	T	134920325	3	4	9	1	0	0	0	0	1	0	0	0	5216	1116	39	1	2186	1	EPHB1	3	134920325	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21561	134920325	63102105	5070	13221											
PPP2R3A	5523	broad.mit.edu	37	chr3	135742000	135742000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgtgattttgttctccCttcacggtttaagaagcggc	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135742000	A	A	135742000	1	1	9	0	1	0	0	0	0	0	0	0	12489	681	24	2		2	PPP2R3A	3	135742000	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	821675	135742000	62280430	5071	13222											
PPP2R3A	5523	broad.mit.edu	37	chr3	135820941	135820941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaggagcagtgtgaacGgatggaagccatgggaattg	16	5	0	2	rs149384978	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135820941	T	T	135820941	3	4	9	1	0	0	0	0	1	0	0	0	12489	1116	39	1	3194	1	PPP2R3A	3	135820941	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78941	135820941	62201489	5072	13223											
MSL2	55167	broad.mit.edu	37	chr3	135870725	135870725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcaattttgctatcttcGgagttgctgctgtacatgat	8	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135870725	T	T	135870725	3	4	9	1	0	0	0	0	1	0	0	0	9972	1116	39	1	739	1	MSL2	3	135870725	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49784	135870725	62151705	5073	13224											
PCCB	5096	broad.mit.edu	37	chr3	135974715	135974715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggaaagctaacagccagGgagaggatcagtctcttgct	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135974715	T	T	135974715	3	4	9	1	0	0	0	0	1	0	0	0	11599	1223	43	2	207	2	PCCB	3	135974715	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	103990	135974715	62047715	5074	13225											
STAG1	10274	broad.mit.edu	37	chr3	136059389	136059389	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatcttctaactggcttcGggatgacatcatcacatctt	6	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136059389	T	T	136059389	2	4	9	1	0	0	0	0	0	0	0	1	15360	1124	39	1		1	STAG1	3	136059389	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	84674	136059389	61963041	5075	13226											
STAG1	10274	broad.mit.edu	37	chr3	136192476	136192476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacttcagcctgacttcccCttgcttcagaaatacaaata	4	13	2	2	rs35073998		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136192476	A	A	136192476	3	1	9	1	0	0	0	0	1	0	0	0	15360	681	24	2	2842	2	STAG1	3	136192476	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133087	136192476	61829954	5076	13227											
STAG1	10274	broad.mit.edu	37	chr3	136455363	136455363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctccatttttactttcGgtggtctcaggaaggtccga	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136455363	T	T	136455363	1	4	9	0	1	0	0	0	0	0	0	0	15360	1131	39	1		1	STAG1	3	136455363	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	262887	136455363	61567067	5077	13228											
TMEM22	80723	broad.mit.edu	37	chr3	136573359	136573359	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgggtgaaaatacatccCaacacagtgatggtgaaata	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136573359	A	A	136573359	2	1	9	1	0	0	0	0	0	0	0	1	16266	581	21	2		2	TMEM22	3	136573359	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	117996	136573359	61449071	5078	13229											
TMEM22	80723	broad.mit.edu	37	chr3	136573606	136573606	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaacatttttcaatccCgaaaaatgtggatagtgctg	7	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136573606	A	A	136573606	2	1	9	1	0	0	0	0	0	0	0	1	16266	644	23	1		1	TMEM22	3	136573606	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	247	136573606	61448824	5079	13230											
TMEM22	80723	broad.mit.edu	37	chr3	136573720	136573720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctagaactgatttttatcCgttctgtttttcaggtctta	6	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136573720	A	A	136573720	3	1	9	1	0	0	0	0	1	0	0	0	16266	652	23	1	420	1	TMEM22	3	136573720	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	136573720	61448710	5080	13231											
TMEM22	80723	broad.mit.edu	37	chr3	136574394	136574394	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctatggtcttgcagcttctCgtgctgcacatatttcctag	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136574394	A	A	136574394	2	1	9	1	0	0	0	0	0	0	0	1	16266	871	31	3		3	TMEM22	3	136574394	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	674	136574394	61448036	5081	13232											
NCK1	4690	broad.mit.edu	37	chr3	136664702	136664702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaggtgacagtcctttGggtgaccatgtgggttctct	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136664702	T	T	136664702	3	4	9	1	0	0	0	0	1	0	0	0	10314	1339	47	2	510	2	NCK1	3	136664702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90308	136664702	61357728	5082	13233											
DZIP1L	199221	broad.mit.edu	37	chr3	137796416	137796416	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagtgcttcagcaaagtGgggttacgcctcagagctgc	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137796416	T	T	137796416	2	4	9	1	0	0	0	0	0	0	0	1	4904	1335	47	2		2	DZIP1L	3	137796416	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1131714	137796416	60226014	5083	13234											
DZIP1L	199221	broad.mit.edu	37	chr3	137811220	137811220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaagccttttatgttgGgtacctcttctagtgtagag	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137811220	T	T	137811220	1	4	9	0	1	0	0	0	0	0	0	0	4904	1247	43	2		2	DZIP1L	3	137811220	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14804	137811220	60211210	5084	13235											
DZIP1L	199221	broad.mit.edu	37	chr3	137813774	137813774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccactttagcttggccCgtagctcttctaacacctct	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137813774	A	A	137813774	3	1	9	1	0	0	0	0	1	0	0	0	4904	652	23	1	1726	1	DZIP1L	3	137813774	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2554	137813774	60208656	5085	13236											
DZIP1L	199221	broad.mit.edu	37	chr3	137822671	137822671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtggccacatccagttccCgggccacgcggtctacatcc	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137822671	A	A	137822671	3	1	9	1	0	0	0	0	1	0	0	0	4904	652	23	1	2229	1	DZIP1L	3	137822671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8897	137822671	60199759	5086	13237											
ARMC8	25852	broad.mit.edu	37	chr3	138003299	138003299	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcttagccaacatagcGgatgggacaacagcaaaaga	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138003299	T	T	138003299	2	4	9	1	0	0	0	0	0	0	0	1	961	1103	39	1		1	ARMC8	3	138003299	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	180628	138003299	60019131	5087	13238											
MRAS	22808	broad.mit.edu	37	chr3	138117322	138117322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcccagggagtcattccCgatgatcctcgtggccaaca	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138117322	A	A	138117322	3	1	9	1	0	0	0	0	1	0	0	0	9849	652	23	1	369	1	MRAS	3	138117322	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114023	138117322	59905108	5088	13239											
ESYT3	83850	broad.mit.edu	37	chr3	138174025	138174025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactaccaagagcctcttccCgtcttcacagatcatctctc	5	16	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138174025	A	A	138174025	1	1	9	0	1	0	0	0	0	0	0	0	5308	667	23	1		1	ESYT3	3	138174025	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56703	138174025	59848405	5089	13240											
ESYT3	83850	broad.mit.edu	37	chr3	138187642	138187642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgtgttgctttaacccCgttattcctgtgctgcagag	10	11	0	1	rs57025506	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138187642	A	A	138187642	1	1	9	0	1	0	0	0	0	0	0	0	5308	667	23	1		1	ESYT3	3	138187642	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13617	138187642	59834788	5090	13241											
ESYT3	83850	broad.mit.edu	37	chr3	138193106	138193106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagctgatccctacgtcCgtgtctacttgttgccagaa	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138193106	A	A	138193106	3	1	9	1	0	0	0	0	1	0	0	0	5308	652	23	1	2458	1	ESYT3	3	138193106	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5464	138193106	59829324	5091	13242											
CEP70	80321	broad.mit.edu	37	chr3	138219316	138219316	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtataaacttcattcattcGgggatagactccatttaaag	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138219316	T	T	138219316	2	4	9	1	0	0	0	0	0	0	0	1	3289	1124	39	1		1	CEP70	3	138219316	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26210	138219316	59803114	5092	13243											
CEP70	80321	broad.mit.edu	37	chr3	138219410	138219410	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtggcatattgctgtcCtgtccaaaaaagaggtaaaa	10	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138219410	A	A	138219410	5	1	9	1	0	0	0	0	0	0	1	0	3289	695	24	2	441	2	CEP70	3	138219410	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	138219410	59803020	5093	13244											
FAIM	55179	broad.mit.edu	37	chr3	138329819	138329819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgctgcttccctttataaGgacactcccactgttgtgct	7	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138329819	T	T	138329819	1	4	9	0	1	0	0	0	0	0	0	0	5421	1000	35	2		2	FAIM	3	138329819	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	110409	138329819	59692611	5094	13245											
PIK3CB	5291	broad.mit.edu	37	chr3	138456596	138456596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacatattctactctccCgctgacttgcaacacataat	3	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138456596	A	A	138456596	3	1	9	1	0	0	0	0	1	0	0	0	12009	652	23	1	2532	1	PIK3CB	3	138456596	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126777	138456596	59565834	5095	13246											
MRPS22	56945	broad.mit.edu	37	chr3	139069082	139069082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcctcttgggaagaacGggaccgaatgatacaagttt	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139069082	T	T	139069082	3	4	9	1	0	0	0	0	1	0	0	0	9927	1116	39	1	580	1	MRPS22	3	139069082	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	612486	139069082	58953348	5096	13247											
COPB2	9276	broad.mit.edu	37	chr3	139085679	139085679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattacacaaacacacacccCgccaatctccctcttgctca	2	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139085679	A	A	139085679	1	1	9	0	1	0	0	0	0	0	0	0	3761	667	23	1		1	COPB2	3	139085679	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16597	139085679	58936751	5097	13248											
RBP2	5948	broad.mit.edu	37	chr3	139173577	139173577	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccagtacttaccaggtaCagcttgtccccctcaatcca	5	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139173577	A	A	139173577	2	1	9	1	0	0	0	0	0	0	0	1	13264	465	17	3		3	RBP2	3	139173577	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87898	139173577	58848853	5098	13249											
NMNAT3	349565	broad.mit.edu	37	chr3	139279951	139279951	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacgtgatgacagcatcGggaatcaggtactttacgct	11	8	1	2	rs116410811	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139279951	T	T	139279951	2	4	9	1	0	0	0	0	0	0	0	1	10595	1103	39	1		1	NMNAT3	3	139279951	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	106374	139279951	58742479	5099	13250											
CLSTN2	64084	broad.mit.edu	37	chr3	140282723	140282723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagactttatcctatgcacGgatgtttcattcatgctccc	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140282723	T	T	140282723	1	4	9	0	1	0	0	0	0	0	0	0	3594	1131	39	1		1	CLSTN2	3	140282723	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1002772	140282723	57739707	5100	13251											
CLSTN2	64084	broad.mit.edu	37	chr3	140282809	140282809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttgttccagtggtccCaagcattgccacagtggtca	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140282809	A	A	140282809	3	1	9	1	0	0	0	0	1	0	0	0	3594	594	21	2	2551	2	CLSTN2	3	140282809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	140282809	57739621	5101	13252											
TRIM42	287015	broad.mit.edu	37	chr3	140397175	140397175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcatcttcacctcagagcGgaactgcacctgcttcccct	7	16	4	1	rs148678982		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140397175	T	T	140397175	3	4	9	1	0	0	0	0	1	0	0	0	16641	1116	39	1	106	1	TRIM42	3	140397175	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	114366	140397175	57625255	5102	13253											
TRIM42	287015	broad.mit.edu	37	chr3	140397214	140397214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccttacaaagatgagcGgaactgccagttctgccact	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140397214	T	T	140397214	3	4	9	1	0	0	0	0	1	0	0	0	16641	1116	39	1	145	1	TRIM42	3	140397214	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	140397214	57625216	5103	13254											
ACPL2	92370	broad.mit.edu	37	chr3	141006276	141006276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcacccattgtgtgagatGggagagctcacacagacagg	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141006276	T	T	141006276	3	4	9	1	0	0	0	0	1	0	0	0	166	1348	47	2	500	2	ACPL2	3	141006276	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	609062	141006276	57016154	5104	13255											
ACPL2	92370	broad.mit.edu	37	chr3	141011846	141011846	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaagacagagaaaagccCagtgaacattccgtccggat	11	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141011846	A	A	141011846	2	1	9	1	0	0	0	0	0	0	0	1	166	581	21	2		2	ACPL2	3	141011846	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5570	141011846	57010584	5105	13256											
ACPL2	92370	broad.mit.edu	37	chr3	141011862	141011862	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccagtgaacattccgtcCggattctttacaatggcgtc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141011862	A	A	141011862	2	1	9	1	0	0	0	0	0	0	0	1	166	643	23	1		1	ACPL2	3	141011862	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	141011862	57010568	5106	13257											
ACPL2	92370	broad.mit.edu	37	chr3	141011933	141011933	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaccacaagcgttctccCaagcccatgtgcccgcttga	8	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141011933	A	A	141011933	2	1	9	1	0	0	0	0	0	0	0	1	166	581	21	2		2	ACPL2	3	141011933	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71	141011933	57010497	5107	13258											
ZBTB38	253461	broad.mit.edu	37	chr3	141162763	141162763	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcatgaaatttggcatacGggagaaagacgatatcagtg	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141162763	T	T	141162763	2	4	9	1	0	0	0	0	0	0	0	1	17665	1103	39	1		1	ZBTB38	3	141162763	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	150830	141162763	56859667	5108	13259											
ZBTB38	253461	broad.mit.edu	37	chr3	141162915	141162915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagcctagtgtctatcCgtataaactttataggctac	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141162915	A	A	141162915	3	1	9	1	0	0	0	0	1	0	0	0	17665	652	23	1	1687	1	ZBTB38	3	141162915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	152	141162915	56859515	5109	13260											
ZBTB38	253461	broad.mit.edu	37	chr3	141164413	141164413	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacatgaacgcatccacctGggcttgaaggagttcgtctg	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141164413	T	T	141164413	2	4	9	1	0	0	0	0	0	0	0	1	17665	1335	47	2		2	ZBTB38	3	141164413	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1498	141164413	56858017	5110	13261											
ZBTB38	253461	broad.mit.edu	37	chr3	141164651	141164651	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaacagctgctgcccttGgaatgcaccaaaagaaacac	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141164651	T	T	141164651	4	4	9	1	0	0	0	0	0	1	0	0	17665	1349	47	2	3423	2	ZBTB38	3	141164651	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	238	141164651	56857779	5111	13262											
RASA2	5922	broad.mit.edu	37	chr3	141295906	141295906	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcgtttctttgctgtagcCgtagtatcacctcatacttt	6	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141295906	A	A	141295906	2	1	9	1	0	0	0	0	0	0	0	1	13169	639	23	1		1	RASA2	3	141295906	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	131255	141295906	56726524	5112	13263											
GRK7	131890	broad.mit.edu	37	chr3	141535654	141535654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccatttgtgccagaccCttcagtggtttatgccaaag	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141535654	A	A	141535654	3	1	9	1	0	0	0	0	1	0	0	0	6860	681	24	2	1438	2	GRK7	3	141535654	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	239748	141535654	56486776	5113	13264											
TFDP2	7029	broad.mit.edu	37	chr3	141682779	141682779	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctcattttgtcgatttctCtgtaccaggtttttgaaagc	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141682779	A	A	141682779	3	1	9	1	0	0	0	0	1	0	0	0	15921	912	32	3	597	3	TFDP2	3	141682779	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147125	141682779	56339651	5114	13265											
TFDP2	7029	broad.mit.edu	37	chr3	141762929	141762929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttccgcatctgctgacGggagttggcattggcaattt	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141762929	T	T	141762929	1	4	9	0	1	0	0	0	0	0	0	0	15921	1131	39	1		1	TFDP2	3	141762929	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	80150	141762929	56259501	5115	13266											
GK5	256356	broad.mit.edu	37	chr3	141896448	141896448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaaacaacaaaaaaccCtaaaacaaaatgaagaggtt	4	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141896448	A	A	141896448	1	1	9	0	1	0	0	0	0	0	0	0	6486	696	24	2		2	GK5	3	141896448	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	133519	141896448	56125982	5116	13267											
GK5	256356	broad.mit.edu	37	chr3	141923631	141923631	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgatttcctgttttcCtagaaagaataaaacagtat	6	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141923631	A	A	141923631	5	1	9	1	0	0	0	0	0	0	1	0	6486	695	24	2	1324	2	GK5	3	141923631	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	27183	141923631	56098799	5117	13268											
XRN1	54464	broad.mit.edu	37	chr3	142054343	142054343	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctttaggactcttacactCttctttaactagagacaaga	6	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142054343	A	A	142054343	4	1	9	1	0	0	0	0	0	1	0	0	17586	922	32	3	1270	3	XRN1	3	142054343	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	130712	142054343	55968087	5118	13269											
XRN1	54464	broad.mit.edu	37	chr3	142141508	142141508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaaatgaggtagatgagGgataaaatcattaccaacaa	9	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142141508	T	T	142141508	3	4	9	1	0	0	0	0	1	0	0	0	17586	1232	43	2	4377	2	XRN1	3	142141508	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87165	142141508	55880922	5119	13270											
ATR	545	broad.mit.edu	37	chr3	142180801	142180801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttttctttatatagtttGgtcagaataggtctcaaacc	6	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142180801	T	T	142180801	2	4	9	1	0	0	0	0	0	0	0	1	1208	1335	47	2		2	ATR	3	142180801	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39293	142180801	55841629	5120	13271											
ATR	545	broad.mit.edu	37	chr3	142224058	142224058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaggctttcatgttcaaGgatctgttcttttagagatg	10	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142224058	T	T	142224058	3	4	9	1	0	0	0	0	1	0	0	0	1208	1000	35	2	2891	2	ATR	3	142224058	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43257	142224058	55798372	5121	13272											
ATR	545	broad.mit.edu	37	chr3	142231182	142231182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaatttgtgccttgccCactgtgtgagatggtcaagc	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142231182	A	A	142231182	3	1	9	1	0	0	0	0	1	0	0	0	1208	595	21	2	3246	2	ATR	3	142231182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7124	142231182	55791248	5122	13273											
ATR	545	broad.mit.edu	37	chr3	142277590	142277590	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcataccacataaatcttcCaggatatgatcttcaaatga	5	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142277590	A	A	142277590	2	1	9	1	0	0	0	0	0	0	0	1	1208	581	21	2		2	ATR	3	142277590	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	46408	142277590	55744840	5123	13274											
ATR	545	broad.mit.edu	37	chr3	142281918	142281918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagggagttgctgcaatcCgcagaagtctcgttatgatc	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142281918	A	A	142281918	3	1	9	1	0	0	0	0	1	0	0	0	1208	652	23	1	7784	1	ATR	3	142281918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4328	142281918	55740512	5124	13275											
PLS1	5357	broad.mit.edu	37	chr3	142395215	142395215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactccaattcagctgtcCattgtcttttggagtcagta	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142395215	A	A	142395215	1	1	9	0	1	0	0	0	0	0	0	0	12202	609	21	2		2	PLS1	3	142395215	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	113297	142395215	55627215	5125	13276											
TRPC1	7220	broad.mit.edu	37	chr3	142467144	142467144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagtattcaacaactatGgatgttgcacctgtcatttt	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142467144	T	T	142467144	3	4	9	1	0	0	0	0	1	0	0	0	16703	1348	47	2	382	2	TRPC1	3	142467144	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71929	142467144	55555286	5126	13277											
PCOLCE2	26577	broad.mit.edu	37	chr3	142542411	142542411	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattgccctccagagtcccCgtccgtctacacttttgttg	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142542411	A	A	142542411	2	1	9	1	0	0	0	0	0	0	0	1	11689	639	23	1		1	PCOLCE2	3	142542411	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75267	142542411	55480019	5127	13278											
SR140	23350	broad.mit.edu	37	chr3	142741382	142741382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatttggaagatttggacCgttagccagtgtgaaaatca	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142741382	A	A	142741382	3	1	9	1	0	0	0	0	1	0	0	0	15249	652	23	1	938	1	SR140	3	142741382	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	198971	142741382	55281048	5128	13279											
SLC9A9	285195	broad.mit.edu	37	chr3	143214240	143214240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgaacagtgccaggccCatgtaacagaagatgacgtt	11	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143214240	A	A	143214240	3	1	9	1	0	0	0	0	1	0	0	0	14835	594	21	2	825	2	SLC9A9	3	143214240	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	472858	143214240	54808190	5129	13280											
C3orf58	205428	broad.mit.edu	37	chr3	143704476	143704476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgttggagaagaactgtGgagttactttaatgcgccat	11	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143704476	T	T	143704476	3	4	9	1	0	0	0	0	1	0	0	0	2258	1357	47	2	789	2	C3orf58	3	143704476	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	490236	143704476	54317954	5130	13281											
C3orf58	205428	broad.mit.edu	37	chr3	143708604	143708604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggatgagtgtgccaaccCaaagaagcgctatggcagat	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143708604	A	A	143708604	3	1	9	1	0	0	0	0	1	0	0	0	2258	594	21	2	1258	2	C3orf58	3	143708604	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4128	143708604	54313826	5131	13282											
PLOD2	5352	broad.mit.edu	37	chr3	145795701	145795701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaggggagtctttttccCtttgtaaagtctaaaatgaa	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145795701	A	A	145795701	1	1	9	0	1	0	0	0	0	0	0	0	12197	681	24	2		2	PLOD2	3	145795701	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2087097	145795701	52226729	5132	13283											
PLOD2	5352	broad.mit.edu	37	chr3	145795753	145795753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagttgacctgtacaccCgctctctcaggtattctttg	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145795753	A	A	145795753	1	1	9	0	1	0	0	0	0	0	0	0	12197	667	23	1		1	PLOD2	3	145795753	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	145795753	52226677	5133	13284											
PLSCR1	5359	broad.mit.edu	37	chr3	146251293	146251293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatactgaggaggataccCaactggcaagtttgtttccg	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146251293	A	A	146251293	3	1	9	1	0	0	0	0	1	0	0	0	12204	594	21	2	926	2	PLSCR1	3	146251293	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	455540	146251293	51771137	5134	13285											
PLSCR1	5359	broad.mit.edu	37	chr3	146251312	146251312	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaactggcaagtttgtttcCgggtgagaagcattcatctg	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146251312	A	A	146251312	2	1	9	1	0	0	0	0	0	0	0	1	12204	639	23	1		1	PLSCR1	3	146251312	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	146251312	51771118	5135	13286											
PLSCR5	389158	broad.mit.edu	37	chr3	146311878	146311878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagtaaattctttgtccCaagctgtttttaatctcata	5	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146311878	A	A	146311878	3	1	9	1	0	0	0	0	1	0	0	0	12208	593	21	2	549	2	PLSCR5	3	146311878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60566	146311878	51710552	5136	13287											
ZIC4	84107	broad.mit.edu	37	chr3	147113830	147113830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtggttggcctgttccGggccgccgacgtgctccacg	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147113830	T	T	147113830	3	4	9	1	0	0	0	0	1	0	0	0	17807	1116	39	1	519	1	ZIC4	3	147113830	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	801952	147113830	50908600	5137	13288											
CPB1	1360	broad.mit.edu	37	chr3	148577719	148577719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttccagaatcccagatccGggctacctgcgaggagacct	10	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148577719	T	T	148577719	3	4	9	1	0	0	0	0	1	0	0	0	3828	1116	39	1	1226	1	CPB1	3	148577719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1463889	148577719	49444711	5138	13289											
GYG1	2992	broad.mit.edu	37	chr3	148727177	148727177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctatatactcctacctccCggcatttaaagtgtaagtgc	6	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148727177	A	A	148727177	3	1	9	1	0	0	0	0	1	0	0	0	6970	652	23	1	614	1	GYG1	3	148727177	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149458	148727177	49295253	5139	13290											
HLTF	6596	broad.mit.edu	37	chr3	148773115	148773115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgcttaacacagaaagcGgacagatgatcagtgttgtt	11	6	1	3	rs151046571		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148773115	T	T	148773115	3	4	9	1	0	0	0	0	1	0	0	0	7282	1116	39	1	1629	1	HLTF	3	148773115	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45938	148773115	49249315	5140	13291											
HLTF	6596	broad.mit.edu	37	chr3	148781228	148781228	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagtttaccttttggggcGggagctagacaattctgaca	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148781228	T	T	148781228	3	4	9	1	0	0	0	0	1	0	0	0	7282	1116	39	1	1943	1	HLTF	3	148781228	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8113	148781228	49241202	5141	13292											
CP	1356	broad.mit.edu	37	chr3	148917539	148917539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggggaatagtatgtgccCtcgttgttcttattgaatct	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148917539	A	A	148917539	3	1	9	1	0	0	0	0	1	0	0	0	3819	680	24	2	1784	2	CP	3	148917539	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136311	148917539	49104891	5142	13293											
TM4SF1	4071	broad.mit.edu	37	chr3	149093467	149093467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagggcaggaggacctacCgcacatcgtttgccacagtt	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149093467	A	A	149093467	2	1	9	1	0	0	0	0	0	0	0	1	16089	666	23	1		1	TM4SF1	3	149093467	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	175928	149093467	48928963	5143	13294											
WWTR1	25937	broad.mit.edu	37	chr3	149238681	149238681	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcagattccaaagttcCtaagtcaacgtttgttcctg	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149238681	A	A	149238681	4	1	9	1	0	0	0	0	0	1	0	0	17544	690	24	2	92	2	WWTR1	3	149238681	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145214	149238681	48783749	5144	13295											
WWTR1	25937	broad.mit.edu	37	chr3	149238699	149238699	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctaagtcaacgtttgttcCtggaagacagtcaaggaaat	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149238699	A	A	149238699	4	1	9	1	0	0	0	0	0	1	0	0	17544	690	24	2	110	2	WWTR1	3	149238699	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	149238699	48783731	5145	13296											
WWTR1	25937	broad.mit.edu	37	chr3	149238729	149238729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaggaaatcagggaaacGggtctgttggggattgatgt	16	4	3	1	rs150073251	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149238729	T	T	149238729	3	4	9	1	0	0	0	0	1	0	0	0	17544	1116	39	1	140	1	WWTR1	3	149238729	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	149238729	48783701	5146	13297											
WWTR1	25937	broad.mit.edu	37	chr3	149245658	149245658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagctattattagtgatGgatctcatgtctggggtcat	11	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149245658	T	T	149245658	2	4	9	1	0	0	0	0	0	0	0	1	17544	1335	47	2		2	WWTR1	3	149245658	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6929	149245658	48776772	5147	13298											
PFN2	5217	broad.mit.edu	37	chr3	149684357	149684357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggaccccttcttttccCattacaaagaccaagactga	5	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149684357	A	A	149684357	3	1	9	1	0	0	0	0	1	0	0	0	11863	594	21	2	186	2	PFN2	3	149684357	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	438699	149684357	48338073	5148	13299											
PFN2	5217	broad.mit.edu	37	chr3	149686303	149686303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttggtaaagaaaccttccCggtcttttcctacaatcata	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149686303	A	A	149686303	3	1	9	1	0	0	0	0	1	0	0	0	11863	652	23	1	365	1	PFN2	3	149686303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1946	149686303	48336127	5149	13300											
SELT	51714	broad.mit.edu	37	chr3	150329002	150329002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctacatgtgaaaaagcGgtaaacagtgttaacatcca	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150329002	T	T	150329002	1	4	9	0	1	0	0	0	0	0	0	0	14135	1131	39	1		1	SELT	3	150329002	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	642699	150329002	47693428	5150	13301											
FAM194A	131831	broad.mit.edu	37	chr3	150416579	150416579	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaatcaaactactcactCgattgcactttatcagacaa	4	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150416579	A	A	150416579	2	1	9	1	0	0	0	0	0	0	0	1	5573	898	31	3		3	FAM194A	3	150416579	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87577	150416579	47605851	5151	13302											
MED12L	116931	broad.mit.edu	37	chr3	150877810	150877810	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggccctggcatgagcccCgtgcagctggccttctcaga	12	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150877810	A	A	150877810	2	1	9	1	0	0	0	0	0	0	0	1	9522	639	23	1		1	MED12L	3	150877810	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	461231	150877810	47144620	5152	13303											
GPR171	29909	broad.mit.edu	37	chr3	150916484	150916484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagcatatgatgtagccCgtggtcactaaaagtatgtt	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150916484	A	A	150916484	2	1	9	1	0	0	0	0	0	0	0	1	6733	639	23	1		1	GPR171	3	150916484	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38674	150916484	47105946	5153	13304											
P2RY13	53829	broad.mit.edu	37	chr3	151045736	151045736	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatttccacattatctacGgaagtctcatcaataaatag	5	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151045736	T	T	151045736	1	4	9	0	1	0	0	0	0	0	0	0	11444	1131	39	1		1	P2RY13	3	151045736	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	129252	151045736	46976694	5154	13305											
P2RY12	64805	broad.mit.edu	37	chr3	151055627	151055627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattggagtctcttcatttGggtcaccaccatcctgttct	7	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151055627	T	T	151055627	3	4	9	1	0	0	0	0	1	0	0	0	11443	1348	47	2	25	2	P2RY12	3	151055627	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9891	151055627	46966803	5155	13306											
P2RY12	64805	broad.mit.edu	37	chr3	151055687	151055687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagatgttgcagaattgGggcacttcagcatacttatc	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151055687	T	T	151055687	3	4	9	1	0	0	0	0	1	0	0	0	11443	1232	43	2	85	2	P2RY12	3	151055687	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60	151055687	46966743	5156	13307											
MED12L	116931	broad.mit.edu	37	chr3	151101950	151101950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctatcaaatgcatccCctgggggatctgaagagaac	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151101950	A	A	151101950	3	1	9	1	0	0	0	0	1	0	0	0	9522	623	22	2	4895	2	MED12L	3	151101950	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46263	151101950	46920480	5157	13308											
MED12L	116931	broad.mit.edu	37	chr3	151112462	151112462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggctccagattggaccCtgcaggctcctttgtcccaa	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151112462	A	A	151112462	3	1	9	1	0	0	0	0	1	0	0	0	9522	681	24	2	5668	2	MED12L	3	151112462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10512	151112462	46909968	5158	13309											
IGSF10	285313	broad.mit.edu	37	chr3	151154970	151154970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatttgatatttggcttaGggattccatcagacacacaa	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151154970	T	T	151154970	3	4	9	1	0	0	0	0	1	0	0	0	7667	1000	35	2	496	2	IGSF10	3	151154970	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42508	151154970	46867460	5159	13310											
IGSF10	285313	broad.mit.edu	37	chr3	151155403	151155403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctctccaccttcatttcGggccacacagataaagtcgg	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151155403	T	T	151155403	2	4	9	1	0	0	0	0	0	0	0	1	7667	1124	39	1		1	IGSF10	3	151155403	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	433	151155403	46867027	5160	13311											
IGSF10	285313	broad.mit.edu	37	chr3	151163419	151163419	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgattgctttcctagttgtGgtactctggtgtgatttgct	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151163419	T	T	151163419	2	4	9	1	0	0	0	0	0	0	0	1	7667	1335	47	2		2	IGSF10	3	151163419	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8016	151163419	46859011	5161	13312											
IGSF10	285313	broad.mit.edu	37	chr3	151164995	151164995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatctttgatcatagtcCttactgttattgggggtcta	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151164995	A	A	151164995	3	1	9	1	0	0	0	0	1	0	0	0	7667	681	24	2	5157	2	IGSF10	3	151164995	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1576	151164995	46857435	5162	13313											
IGSF10	285313	broad.mit.edu	37	chr3	151166210	151166210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccatcctcactgacataaGgggctctcactttacttcca	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151166210	T	T	151166210	3	4	9	1	0	0	0	0	1	0	0	0	7667	1000	35	2	6372	2	IGSF10	3	151166210	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1215	151166210	46856220	5163	13314											
AADACL2	344752	broad.mit.edu	37	chr3	151458602	151458602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaagaaagtcagaaaccCgaaggcgagctgtgatatat	10	7	1	3	rs151302423	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151458602	A	A	151458602	2	1	9	1	0	0	0	0	0	0	0	1	11	644	23	1		1	AADACL2	3	151458602	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	292392	151458602	46563828	5164	13315											
AADACL2	344752	broad.mit.edu	37	chr3	151461988	151461988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctactatgatttttgcCtttaccatgtagaggtttga	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151461988	A	A	151461988	1	1	9	0	1	0	0	0	0	0	0	0	11	696	24	2		2	AADACL2	3	151461988	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3386	151461988	46560442	5165	13316											
AADACL2	344752	broad.mit.edu	37	chr3	151463331	151463331	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaacaccactttcctgctCagtttgaagatggccttgct	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151463331	A	A	151463331	3	1	9	1	0	0	0	0	1	0	0	0	11	827	29	3	480	3	AADACL2	3	151463331	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1343	151463331	46559099	5166	13317											
AADACL2	344752	broad.mit.edu	37	chr3	151463409	151463409	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatggagtggatcccaccCgaatctgcattgcgggagac	12	10	1	1	rs141274337		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151463409	A	A	151463409	2	1	9	1	0	0	0	0	0	0	0	1	11	644	23	1		1	AADACL2	3	151463409	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	151463409	46559021	5167	13318											
SUCNR1	56670	broad.mit.edu	37	chr3	151599205	151599205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaacagtgtcatcaacCctgtcttctattttcttttg	5	10	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151599205	A	A	151599205	3	1	9	1	0	0	0	0	1	0	0	0	15484	623	22	2	880	2	SUCNR1	3	151599205	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	135796	151599205	46423225	5168	13319											
MBNL1	4154	broad.mit.edu	37	chr3	152150565	152150565	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagccgcctttaatccCtatctgggacctgtttctcc	7	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152150565	A	A	152150565	2	1	9	1	0	0	0	0	0	0	0	1	9446	668	24	2		2	MBNL1	3	152150565	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	551360	152150565	45871865	5169	13320											
MBNL1	4154	broad.mit.edu	37	chr3	152174070	152174070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaagttcccatggtgcacGgtgctacgccagccactgtg	12	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152174070	T	T	152174070	3	4	9	1	0	0	0	0	1	0	0	0	9446	1116	39	1	1096	1	MBNL1	3	152174070	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23505	152174070	45848360	5170	13321											
P2RY1	5028	broad.mit.edu	37	chr3	152554257	152554257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggccatgttctgtgtccCcttggtgctgattctgggct	13	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152554257	A	A	152554257	3	1	9	1	0	0	0	0	1	0	0	0	11440	623	22	2	688	2	P2RY1	3	152554257	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	380187	152554257	45468173	5171	13322											
C3orf79	152118	broad.mit.edu	37	chr3	153202514	153202514	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttcagcctagacattctCtgcttattgagccccatagg	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153202514	A	A	153202514	1	1	9	0	1	0	0	0	0	0	0	0	2269	928	32	3		3	C3orf79	3	153202514	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	648257	153202514	44819916	5172	13323											
DHX36	170506	broad.mit.edu	37	chr3	154010320	154010320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgttctaaaagctttGgacagagttcccaccttacc	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154010320	T	T	154010320	1	4	9	0	1	0	0	0	0	0	0	0	4549	1363	47	2		2	DHX36	3	154010320	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	807806	154010320	44012110	5173	13324											
DHX36	170506	broad.mit.edu	37	chr3	154024079	154024079	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctgcagctactctttcCgcaacctttaattcaaataa	3	12	3	0	rs2048395	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154024079	A	A	154024079	2	1	9	1	0	0	0	0	0	0	0	1	4549	639	23	1		1	DHX36	3	154024079	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13759	154024079	43998351	5174	13325											
GPR149	344758	broad.mit.edu	37	chr3	154055990	154055990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaagagatagggttttcCctgtaggtgcatggagagac	14	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154055990	A	A	154055990	3	1	9	1	0	0	0	0	1	0	0	0	6719	623	22	2	505	2	GPR149	3	154055990	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31911	154055990	43966440	5175	13326											
GPR149	344758	broad.mit.edu	37	chr3	154146724	154146724	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggaaatttcctggtagttGgagtggagtctcggcggctc	16	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154146724	T	T	154146724	2	4	9	1	0	0	0	0	0	0	0	1	6719	1335	47	2		2	GPR149	3	154146724	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	90734	154146724	43875706	5176	13327											
MME	4311	broad.mit.edu	37	chr3	154878124	154878124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgctttaattgtgtgagtGggttgaatcagataatgcag	12	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154878124	T	T	154878124	1	4	9	0	1	0	0	0	0	0	0	0	9738	1363	47	2		2	MME	3	154878124	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	731400	154878124	43144306	5177	13328											
PLCH1	23007	broad.mit.edu	37	chr3	155199945	155199945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggttgctttctaaggcCgctgtcttggccttactaga	12	10	2	1	rs146057173		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155199945	A	A	155199945	2	1	9	1	0	0	0	0	0	0	0	1	12132	639	23	1		1	PLCH1	3	155199945	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	321821	155199945	42822485	5178	13329											
PLCH1	23007	broad.mit.edu	37	chr3	155210568	155210568	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttggggagttgctgtcCactgataactttcaggatga	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155210568	A	A	155210568	4	1	9	1	0	0	0	0	0	1	0	0	12132	603	21	2	2903	2	PLCH1	3	155210568	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10623	155210568	42811862	5179	13330											
PLCH1	23007	broad.mit.edu	37	chr3	155211945	155211945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacctttgcacatttgctGgggtttgaggacatagccac	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155211945	T	T	155211945	3	4	9	1	0	0	0	0	1	0	0	0	12132	1357	47	2	2997	2	PLCH1	3	155211945	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1377	155211945	42810485	5180	13331											
PLCH1	23007	broad.mit.edu	37	chr3	155313958	155313958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgaagcttcaagagccCactcagtataacccgtgtgt	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155313958	A	A	155313958	1	1	9	0	1	0	0	0	0	0	0	0	12132	609	21	2		2	PLCH1	3	155313958	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	102013	155313958	42708472	5181	13332											
GMPS	8833	broad.mit.edu	37	chr3	155649612	155649612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaagatgaacctgactGggaatcacttatttttctgg	9	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155649612	T	T	155649612	3	4	9	1	0	0	0	0	1	0	0	0	6562	1357	47	2	1669	2	GMPS	3	155649612	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	335654	155649612	42372818	5182	13333											
KCNAB1	7881	broad.mit.edu	37	chr3	155838413	155838413	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccacgatgctggcagccCggacaggggcagcggggagt	17	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155838413	A	A	155838413	2	1	9	1	0	0	0	0	0	0	0	1	8079	643	23	1		1	KCNAB1	3	155838413	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	188801	155838413	42184017	5183	13334											
KCNAB1	7881	broad.mit.edu	37	chr3	155894768	155894768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttgtgccacttcctccGtggagctctcccatccctca	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155894768	T	T	155894768	1	4	9	0	1	0	0	0	0	0	0	0	8079	1160	40	3		3	KCNAB1	3	155894768	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	56355	155894768	42127662	5184	13335											
CCNL1	57018	broad.mit.edu	37	chr3	156866175	156866175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgcatctgagtgatccCgagacttgctctgagatcga	12	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156866175	A	A	156866175	3	1	9	1	0	0	0	0	1	0	0	0	2961	652	23	1	148	1	CCNL1	3	156866175	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	971407	156866175	41156255	5185	13336											
VEPH1	79674	broad.mit.edu	37	chr3	157081133	157081133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaagtttctcaggtttGggaagtacacaacacttacc	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157081133	T	T	157081133	1	4	9	0	1	0	0	0	0	0	0	0	17281	1363	47	2		2	VEPH1	3	157081133	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	214958	157081133	40941297	5186	13337											
VEPH1	79674	broad.mit.edu	37	chr3	157081333	157081333	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacagtttctgacaaattctCtgagtctatatgtataatat	5	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157081333	A	A	157081333	4	1	9	1	0	0	0	0	0	1	0	0	17281	922	32	3	970	3	VEPH1	3	157081333	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	200	157081333	40941097	5187	13338											
PTX3	5806	broad.mit.edu	37	chr3	157160202	157160202	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgttccaagaagatttttGgaagcgtgcatccagtgaga	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157160202	T	T	157160202	4	4	9	1	0	0	0	0	0	1	0	0	12930	1349	47	2	590	2	PTX3	3	157160202	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78869	157160202	40862228	5188	13339											
MLF1	4291	broad.mit.edu	37	chr3	158317881	158317881	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtcatcatatccatgacCgagctcatgtcattaaaaag	7	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158317881	A	A	158317881	2	1	9	1	0	0	0	0	0	0	0	1	9707	644	23	1		1	MLF1	3	158317881	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1157679	158317881	39704549	5189	13340											
MFSD1	64747	broad.mit.edu	37	chr3	158522140	158522140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctatgataatcctgctgccCttcagactcaagttaaacga	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158522140	A	A	158522140	3	1	9	1	0	0	0	0	1	0	0	0	9620	681	24	2	349	2	MFSD1	3	158522140	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	204259	158522140	39500290	5190	13341											
MFSD1	64747	broad.mit.edu	37	chr3	158539488	158539488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctattgcatgtgaagtatGggtctttataatcaaatgtt	9	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158539488	T	T	158539488	1	4	9	0	1	0	0	0	0	0	0	0	9620	1363	47	2		2	MFSD1	3	158539488	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17348	158539488	39482942	5191	13342											
MFSD1	64747	broad.mit.edu	37	chr3	158542036	158542036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtttcttgtgagtattcCgtatgacaacattttgtttc	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158542036	A	A	158542036	1	1	9	0	1	0	0	0	0	0	0	0	9620	667	23	1		1	MFSD1	3	158542036	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2548	158542036	39480394	5192	13343											
IL12A	3592	broad.mit.edu	37	chr3	159713300	159713300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatgctttcagaattcGggcagtgactattgatagag	10	7	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159713300	T	T	159713300	3	4	9	1	0	0	0	0	1	0	0	0	7694	1116	39	1	742	1	IL12A	3	159713300	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1171264	159713300	38309130	5193	13344											
IL12A	3592	broad.mit.edu	37	chr3	159713367	159713367	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcgaggtccctccaaacCgttgtcatttttataaaact	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159713367	A	A	159713367	1	1	9	0	1	0	0	0	0	0	0	0	7694	667	23	1		1	IL12A	3	159713367	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	67	159713367	38309063	5194	13345											
SMC4	10051	broad.mit.edu	37	chr3	160119769	160119769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagcattcctcctccccCgcctccagcaatgaccaatg	6	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160119769	A	A	160119769	3	1	9	1	0	0	0	0	1	0	0	0	14899	652	23	1	212	1	SMC4	3	160119769	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	406402	160119769	37902661	5195	13346											
SMC4	10051	broad.mit.edu	37	chr3	160141331	160141331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctttttattttgctttacGagataccttagtagctgaca	7	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160141331	T	T	160141331	3	4	9	1	0	0	0	0	1	0	0	0	14899	1058	37	3	2188	3	SMC4	3	160141331	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21562	160141331	37881099	5196	13347											
SMC4	10051	broad.mit.edu	37	chr3	160141480	160141480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgtttttttttcccccCacagcattgactttatttaa	5	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160141480	A	A	160141480	1	1	9	0	1	0	0	0	0	0	0	0	14899	609	21	2		2	SMC4	3	160141480	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	160141480	37880950	5197	13348											
TRIM59	286827	broad.mit.edu	37	chr3	160156357	160156357	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccaacatcacagagagcCgttaggaaactttttttttt	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160156357	A	A	160156357	2	1	9	1	0	0	0	0	0	0	0	1	16657	639	23	1		1	TRIM59	3	160156357	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14877	160156357	37866073	5198	13349											
KPNA4	3840	broad.mit.edu	37	chr3	160243890	160243890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatctctacactggggccCatcacctgtagaaaaaaagg	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160243890	A	A	160243890	3	1	9	1	0	0	0	0	1	0	0	0	8503	594	21	2	1039	2	KPNA4	3	160243890	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87533	160243890	37778540	5199	13350											
PPM1L	151742	broad.mit.edu	37	chr3	160474165	160474165	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctacttcttgctgagaccCgagacgcttttcctgctgtg	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160474165	A	A	160474165	2	1	9	1	0	0	0	0	0	0	0	1	12445	639	23	1		1	PPM1L	3	160474165	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	230275	160474165	37548265	5200	13351											
NMD3	51068	broad.mit.edu	37	chr3	160960310	160960310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagtggcagatattgatGggagcactttctggagtcac	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160960310	T	T	160960310	3	4	9	1	0	0	0	0	1	0	0	0	10583	1348	47	2	924	2	NMD3	3	160960310	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	486145	160960310	37062120	5201	13352											
NMD3	51068	broad.mit.edu	37	chr3	160964133	160964133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcttaagcataccctcGgggaagtctgggtacagaag	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160964133	T	T	160964133	3	4	9	1	0	0	0	0	1	0	0	0	10583	1116	39	1	1069	1	NMD3	3	160964133	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3823	160964133	37058297	5202	13353											
SI	6476	broad.mit.edu	37	chr3	164705043	164705043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatatataattttaccCatgtttgtagaatagcatat	5	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164705043	A	A	164705043	1	1	9	0	1	0	0	0	0	0	0	0	14410	609	21	2		2	SI	3	164705043	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3740910	164705043	33317387	5203	13354											
SI	6476	broad.mit.edu	37	chr3	164712182	164712182	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtttcattccaggaagcGggatcttgtctctgaaacaa	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164712182	T	T	164712182	2	4	9	1	0	0	0	0	0	0	0	1	14410	1103	39	1		1	SI	3	164712182	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7139	164712182	33310248	5204	13355											
SI	6476	broad.mit.edu	37	chr3	164739131	164739131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggttggaatgtttaacGgtactggtacttcatatctc	12	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164739131	T	T	164739131	3	4	9	1	0	0	0	0	1	0	0	0	14410	1116	39	1	2431	1	SI	3	164739131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26949	164739131	33283299	5205	13356											
SI	6476	broad.mit.edu	37	chr3	164739159	164739159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcatatctcttcttttGgggatcataaatctattgca	5	8	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164739159	T	T	164739159	3	4	9	1	0	0	0	0	1	0	0	0	14410	1357	47	2	2459	2	SI	3	164739159	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	164739159	33283271	5206	13357											
SI	6476	broad.mit.edu	37	chr3	164741477	164741477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaggtcagctgttatacCcatggatgaatagcgagctg	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164741477	A	A	164741477	3	1	9	1	0	0	0	0	1	0	0	0	14410	623	22	2	2595	2	SI	3	164741477	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2318	164741477	33280953	5207	13358											
SI	6476	broad.mit.edu	37	chr3	164758910	164758910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagaaagagaaattaaaatAagaaagctaaagtatgagtg	9	1	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164758910	T	T	164758910	1	4	9	0	1	0	0	0	0	0	0	0	14410	377	13	5		5	SI	3	164758910	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	17433	164758910	33263520	5208	13359											
SI	6476	broad.mit.edu	37	chr3	164772962	164772962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcattgaccaaaaccattGgtttaaaatagctacttaca	6	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164772962	T	T	164772962	1	4	9	0	1	0	0	0	0	0	0	0	14410	1363	47	2		2	SI	3	164772962	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14052	164772962	33249468	5209	13360											
SLITRK3	22865	broad.mit.edu	37	chr3	164907851	164907851	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcacaggtaatgtctccCaccagggcagtataaggaat	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164907851	A	A	164907851	2	1	9	1	0	0	0	0	0	0	0	1	14858	581	21	2		2	SLITRK3	3	164907851	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	134889	164907851	33114579	5210	13361											
WDR49	151790	broad.mit.edu	37	chr3	167217955	167217955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacttttaaaaagtgacGgggcctccagaatttgggga	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167217955	T	T	167217955	3	4	9	1	0	0	0	0	1	0	0	0	17429	1116	39	1	140	1	WDR49	3	167217955	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2310104	167217955	30804475	5211	13362											
WDR49	151790	broad.mit.edu	37	chr3	167293815	167293815	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgctagctggttattaaacGagatgaaaagtcgtccatgg	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167293815	T	T	167293815	4	4	9	1	0	0	0	0	0	1	0	0	17429	1059	37	3	1764	3	WDR49	3	167293815	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75860	167293815	30728615	5212	13363											
GOLIM4	27333	broad.mit.edu	37	chr3	167728101	167728101	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctcagcaactgcagcccCgtcttcttcctcctcttctt	4	17	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167728101	A	A	167728101	3	1	9	1	0	0	0	0	1	0	0	0	6630	652	23	1	47	1	GOLIM4	3	167728101	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	434286	167728101	30294329	5213	13364											
GOLIM4	27333	broad.mit.edu	37	chr3	167728522	167728522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaatagaaatatgtatccCggtcatacattttcatcatt	4	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167728522	A	A	167728522	1	1	9	0	1	0	0	0	0	0	0	0	6630	667	23	1		1	GOLIM4	3	167728522	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	421	167728522	30293908	5214	13365											
GOLIM4	27333	broad.mit.edu	37	chr3	167745545	167745545	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattctgggtcggcttctcGgggtccttgttcacgaggct	14	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167745545	T	T	167745545	2	4	9	1	0	0	0	0	0	0	0	1	6630	1124	39	1		1	GOLIM4	3	167745545	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17023	167745545	30276885	5215	13366											
GOLIM4	27333	broad.mit.edu	37	chr3	167750294	167750294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtacaccataccagaagcGggtgacttcatacctcagca	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167750294	T	T	167750294	1	4	9	0	1	0	0	0	0	0	0	0	6630	1131	39	1		1	GOLIM4	3	167750294	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4749	167750294	30272136	5216	13367											
MYNN	55892	broad.mit.edu	37	chr3	169501224	169501224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattgataaatattatattGgtatagtacaccacttcgct	5	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169501224	T	T	169501224	1	4	9	0	1	0	0	0	0	0	0	0	10155	1363	47	2		2	MYNN	3	169501224	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1750930	169501224	28521206	5217	13368											
LRRIQ4	344657	broad.mit.edu	37	chr3	169546731	169546731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactgcaggtaagcctccCcaaatgagcaggctaagaag	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169546731	A	A	169546731	1	1	9	0	1	0	0	0	0	0	0	0	9118	638	22	2		2	LRRIQ4	3	169546731	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45507	169546731	28475699	5218	13369											
LRRC31	79782	broad.mit.edu	37	chr3	169558085	169558085	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtttggccagatgaccCgtctgtatgaccgatgctgg	13	10	1	3	rs35686738		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169558085	A	A	169558085	2	1	9	1	0	0	0	0	0	0	0	1	9073	639	23	1		1	LRRC31	3	169558085	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11354	169558085	28464345	5219	13370											
SEC62	7095	broad.mit.edu	37	chr3	169710572	169710572	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaaaagcaacagaagtcCgacagtgaggaaaagtcaga	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169710572	A	A	169710572	2	1	9	1	0	0	0	0	0	0	0	1	14117	639	23	1		1	SEC62	3	169710572	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	152487	169710572	28311858	5220	13371											
PHC3	80012	broad.mit.edu	37	chr3	169815015	169815015	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatcaaggcttcatgttcCtgttaagattccttcagaga	7	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169815015	A	A	169815015	1	1	9	0	1	0	0	0	0	0	0	0	11913	696	24	2		2	PHC3	3	169815015	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	104443	169815015	28207415	5221	13372											
PHC3	80012	broad.mit.edu	37	chr3	169846464	169846464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtcaaagagcttccaaGggcttaccactggtggatca	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169846464	T	T	169846464	1	4	9	0	1	0	0	0	0	0	0	0	11913	1015	35	2		2	PHC3	3	169846464	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31449	169846464	28175966	5222	13373											
PHC3	80012	broad.mit.edu	37	chr3	169896575	169896575	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacctgtacagcatgtcGgtctgaaccactgtagacag	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169896575	T	T	169896575	2	4	9	1	0	0	0	0	0	0	0	1	11913	1124	39	1		1	PHC3	3	169896575	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50111	169896575	28125855	5223	13374											
PRKCI	5584	broad.mit.edu	37	chr3	169977763	169977763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgttttttaggagaccCgtgtacagtatcatctcagt	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169977763	A	A	169977763	3	1	9	1	0	0	0	0	1	0	0	0	12620	652	23	1	240	1	PRKCI	3	169977763	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81188	169977763	28044667	5224	13375											
PRKCI	5584	broad.mit.edu	37	chr3	169981193	169981193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgtaccagaacgtcctGggatgccttgtccaggagaa	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169981193	T	T	169981193	3	4	9	1	0	0	0	0	1	0	0	0	12620	1348	47	2	354	2	PRKCI	3	169981193	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3430	169981193	28041237	5225	13376											
SKIL	6498	broad.mit.edu	37	chr3	170078422	170078422	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagtagtcagagctcgctGggtggaccagcagcattttc	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170078422	T	T	170078422	2	4	9	1	0	0	0	0	0	0	0	1	14471	1335	47	2		2	SKIL	3	170078422	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	97229	170078422	27944008	5226	13377											
SKIL	6498	broad.mit.edu	37	chr3	170078517	170078517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcaggttcttcctggccCattgctcatcccttcagata	6	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170078517	A	A	170078517	3	1	9	1	0	0	0	0	1	0	0	0	14471	594	21	2	400	2	SKIL	3	170078517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	170078517	27943913	5227	13378											
SKIL	6498	broad.mit.edu	37	chr3	170078766	170078766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacttccattcaatgcccCatcctgtgggctgattacat	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170078766	A	A	170078766	3	1	9	1	0	0	0	0	1	0	0	0	14471	594	21	2	649	2	SKIL	3	170078766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	249	170078766	27943664	5228	13379											
SLC7A14	57709	broad.mit.edu	37	chr3	170198532	170198532	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctgtggtcatgtccacGgtgccgtaattggggtggtt	15	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170198532	T	T	170198532	2	4	9	1	0	0	0	0	0	0	0	1	14810	1103	39	1		1	SLC7A14	3	170198532	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	119766	170198532	27823898	5229	13380											
SLC7A14	57709	broad.mit.edu	37	chr3	170214305	170214305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaggccgccctgcagcGggccaagcaggacatggcgc	17	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170214305	T	T	170214305	1	4	9	0	1	0	0	0	0	0	0	0	14810	1131	39	1		1	SLC7A14	3	170214305	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15773	170214305	27808125	5230	13381											
EIF5A2	56648	broad.mit.edu	37	chr3	170625370	170625370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatctcatgatctgtaacGgaatacaaatgatcaaagtc	7	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170625370	T	T	170625370	1	4	9	0	1	0	0	0	0	0	0	0	5084	1131	39	1		1	EIF5A2	3	170625370	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	411065	170625370	27397060	5231	13382											
TNIK	23043	broad.mit.edu	37	chr3	170819209	170819209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaacctagtcccctcccGgtctacactttaaaagtagt	7	12	1	0	rs141410946	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170819209	T	T	170819209	1	4	9	0	1	0	0	0	0	0	0	0	16436	1131	39	1		1	TNIK	3	170819209	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	193839	170819209	27203221	5232	13383											
TNIK	23043	broad.mit.edu	37	chr3	170819246	170819246	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttctcttacatcagtctGggtatgtcgctgacagccac	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170819246	T	T	170819246	2	4	9	1	0	0	0	0	0	0	0	1	16436	1335	47	2		2	TNIK	3	170819246	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	170819246	27203184	5233	13384											
PLD1	5337	broad.mit.edu	37	chr3	171404502	171404502	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtctagtgagtccttgctCagactcactggacgggtgaa	13	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171404502	A	A	171404502	4	1	9	1	0	0	0	0	0	1	0	0	12140	835	29	3	1432	3	PLD1	3	171404502	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	585256	171404502	26617928	5234	13385											
PLD1	5337	broad.mit.edu	37	chr3	171417566	171417566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaatgcagtccaacctcCaacgatttccctcaaccact	4	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171417566	A	A	171417566	3	1	9	1	0	0	0	0	1	0	0	0	12140	595	21	2	2092	2	PLD1	3	171417566	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13064	171417566	26604864	5235	13386											
PLD1	5337	broad.mit.edu	37	chr3	171417577	171417577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacctccaacgatttccCtcaaccactgggcgtttcag	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171417577	A	A	171417577	3	1	9	1	0	0	0	0	1	0	0	0	12140	680	24	2	2103	2	PLD1	3	171417577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	171417577	26604853	5236	13387											
FNDC3B	64778	broad.mit.edu	37	chr3	172052793	172052793	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagttcttgtttgtacgacGagtcctgacaggcctggacc	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172052793	T	T	172052793	2	4	9	1	0	0	0	0	0	0	0	1	6028	1045	37	3		3	FNDC3B	3	172052793	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	635216	172052793	25969637	5237	13388											
NCEH1	57552	broad.mit.edu	37	chr3	172351308	172351308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtaactattcctagtcCggattcccactgagaagttg	9	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172351308	A	A	172351308	3	1	9	1	0	0	0	0	1	0	0	0	10310	652	23	1	46	1	NCEH1	3	172351308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	298515	172351308	25671122	5238	13389											
NCEH1	57552	broad.mit.edu	37	chr3	172363465	172363465	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agccattgctgtacacagctCatcataatacctgatttcta	5	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172363465	A	A	172363465	4	1	9	1	0	0	0	0	0	1	0	0	10310	835	29	3	853	3	NCEH1	3	172363465	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12157	172363465	25658965	5239	13390											
SPATA16	83893	broad.mit.edu	37	chr3	172607353	172607353	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtggtagtgcctgctccCtaatgactacctttgctgaa	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172607353	A	A	172607353	1	1	9	0	1	0	0	0	0	0	0	0	15117	696	24	2		2	SPATA16	3	172607353	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	243888	172607353	25415077	5240	13391											
SPATA16	83893	broad.mit.edu	37	chr3	172694741	172694741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttctcctccctagttGggacatcaatttttacctgc	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172694741	T	T	172694741	1	4	9	0	1	0	0	0	0	0	0	0	15117	1363	47	2		2	SPATA16	3	172694741	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	87388	172694741	25327689	5241	13392											
NLGN1	22871	broad.mit.edu	37	chr3	173322332	173322332	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatacagtctttctcaagtGgatataaatacgtttgcctc	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173322332	T	T	173322332	1	4	9	0	1	0	0	0	0	0	0	0	10556	1363	47	2		2	NLGN1	3	173322332	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	627591	173322332	24700098	5242	13393											
NAALADL2	254827	broad.mit.edu	37	chr3	175184862	175184862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caataatcacagcgtttatcCgtgccttgatgtcaaaagtt	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175184862	A	A	175184862	3	1	9	1	0	0	0	0	1	0	0	0	10224	652	23	1	1453	1	NAALADL2	3	175184862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1862530	175184862	22837568	5243	13394											
NAALADL2	254827	broad.mit.edu	37	chr3	175184904	175184904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagggtggagaccagacCgaactattgttttctgttct	12	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175184904	A	A	175184904	2	1	9	1	0	0	0	0	0	0	0	1	10224	644	23	1		1	NAALADL2	3	175184904	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	175184904	22837526	5244	13395											
PIK3CA	5290	broad.mit.edu	37	chr3	178916849	178916849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttactcaagaagcagaaaGggaagaattttttgatgaaa	10	3	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178916849	T	T	178916849	3	4	9	1	0	0	0	0	1	0	0	0	12008	1000	35	2	238	2	PIK3CA	3	178916849	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3731945	178916849	19105581	5245	13396											
PIK3CA	5290	broad.mit.edu	37	chr3	178917543	178917543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagaagtacaggacttcCgaagaaatattctgaacgtt	8	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178917543	A	A	178917543	2	1	9	1	0	0	0	0	0	0	0	1	12008	644	23	1		1	PIK3CA	3	178917543	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	694	178917543	19104887	5246	13397											
PIK3CA	5290	broad.mit.edu	37	chr3	178937710	178937710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccatgcagaaactgaccCtgatttgtttttttggaatc	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178937710	A	A	178937710	1	1	9	0	1	0	0	0	0	0	0	0	12008	696	24	2		2	PIK3CA	3	178937710	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20167	178937710	19084720	5247	13398											
ACTL6A	86	broad.mit.edu	37	chr3	179292282	179292282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaagagtaatacctttcCtcttgaagtatgtacgatac	7	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179292282	A	A	179292282	1	1	9	0	1	0	0	0	0	0	0	0	198	696	24	2		2	ACTL6A	3	179292282	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	354572	179292282	18730148	5248	13399											
MRPL47	57129	broad.mit.edu	37	chr3	179311488	179311488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttttttaaaagatattGggcaggggaatgaggcatgg	13	2	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179311488	T	T	179311488	1	4	9	0	1	0	0	0	0	0	0	0	9905	1363	47	2		2	MRPL47	3	179311488	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19206	179311488	18710942	5249	13400											
NDUFB5	4711	broad.mit.edu	37	chr3	179336274	179336274	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatatgaaagaacaatggcCgtccttcagattgaagctga	9	7	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179336274	A	A	179336274	2	1	9	1	0	0	0	0	0	0	0	1	10379	639	23	1		1	NDUFB5	3	179336274	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24786	179336274	18686156	5250	13401											
PEX5L	51555	broad.mit.edu	37	chr3	179529644	179529644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctccgcctgggttatccCgaggaactgccatgcctacg	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179529644	A	A	179529644	3	1	9	1	0	0	0	0	1	0	0	0	11844	652	23	1	801	1	PEX5L	3	179529644	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	193370	179529644	18492786	5251	13402											
PEX5L	51555	broad.mit.edu	37	chr3	179605435	179605435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaattaactctagttgaGgaacagttaaaagtgagaga	9	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179605435	T	T	179605435	1	4	9	0	1	0	0	0	0	0	0	0	11844	1015	35	2		2	PEX5L	3	179605435	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	75791	179605435	18416995	5252	13403											
TTC14	151613	broad.mit.edu	37	chr3	180320969	180320969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatacctagtatggatcGgagagagctgtttttccgag	14	6	0	2	rs150222211		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180320969	T	T	180320969	3	4	9	1	0	0	0	0	1	0	0	0	16807	1116	39	1	354	1	TTC14	3	180320969	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	715534	180320969	17701461	5253	13404											
TTC14	151613	broad.mit.edu	37	chr3	180322406	180322406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatactacaggtaatttatcCgtattatttcaacaacagtt	4	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180322406	A	A	180322406	1	1	9	0	1	0	0	0	0	0	0	0	16807	667	23	1		1	TTC14	3	180322406	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1437	180322406	17700024	5254	13405											
TTC14	151613	broad.mit.edu	37	chr3	180327788	180327788	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaataccggatgattttGgaggtaggtctgaagatcca	12	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180327788	T	T	180327788	4	4	9	1	0	0	0	0	0	1	0	0	16807	1349	47	2	1847	2	TTC14	3	180327788	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5382	180327788	17694642	5255	13406											
TTC14	151613	broad.mit.edu	37	chr3	180327864	180327864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtagcaaaacagaaaagcCatataaatcagaaagacatt	6	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180327864	A	A	180327864	3	1	9	1	0	0	0	0	1	0	0	0	16807	594	21	2	1923	2	TTC14	3	180327864	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	180327864	17694566	5256	13407											
FXR1	8087	broad.mit.edu	37	chr3	180666615	180666615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatactggtaagatagtacCatattataaggtagcttatt	8	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180666615	A	A	180666615	1	1	9	0	1	0	0	0	0	0	0	0	6175	609	21	2		2	FXR1	3	180666615	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	338751	180666615	17355815	5257	13408											
FXR1	8087	broad.mit.edu	37	chr3	180675707	180675707	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaatgaaaataaattaccCagagaagacgtaagtattta	7	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180675707	A	A	180675707	2	1	9	1	0	0	0	0	0	0	0	1	6175	581	21	2		2	FXR1	3	180675707	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9092	180675707	17346723	5258	13409											
ATP11B	23200	broad.mit.edu	37	chr3	182554241	182554241	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaactgctagtttggacGgagaaactaacctgaaggtt	10	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182554241	T	T	182554241	4	4	9	1	0	0	0	0	0	1	0	0	1124	1117	39	1	557	1	ATP11B	3	182554241	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1878534	182554241	15468189	5259	13410											
ATP11B	23200	broad.mit.edu	37	chr3	182631701	182631701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactccatgtgctgtttccCggaaggagaagcagcgtgtg	15	9	0	1	rs138385809		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182631701	A	A	182631701	3	1	9	1	0	0	0	0	1	0	0	0	1124	652	23	1	3485	1	ATP11B	3	182631701	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77460	182631701	15390729	5260	13411											
DCUN1D1	54165	broad.mit.edu	37	chr3	182678902	182678902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaattacttttcaataactGgtattttcatgactttatgc	4	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182678902	T	T	182678902	1	4	9	0	1	0	0	0	0	0	0	0	4346	1363	47	2		2	DCUN1D1	3	182678902	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47201	182678902	15343528	5261	13412											
DCUN1D1	54165	broad.mit.edu	37	chr3	182679059	182679059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaaattaaaagtaaactGgtaaaaatccttaaatcgtc	5	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182679059	T	T	182679059	3	4	9	1	0	0	0	0	1	0	0	0	4346	1357	47	2	320	2	DCUN1D1	3	182679059	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	157	182679059	15343371	5262	13413											
MCCC1	56922	broad.mit.edu	37	chr3	182735093	182735093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaccatgagggaatctccCgctttcactttgtctccagc	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182735093	A	A	182735093	2	1	9	1	0	0	0	0	0	0	0	1	9467	639	23	1		1	MCCC1	3	182735093	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	56034	182735093	15287337	5263	13414											
MCCC1	56922	broad.mit.edu	37	chr3	182751817	182751817	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtcatgtttctggtatacGagatattcagtcttcttcca	8	8	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182751817	T	T	182751817	4	4	9	1	0	0	0	0	0	1	0	0	9467	1059	37	3	558	3	MCCC1	3	182751817	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16724	182751817	15270613	5264	13415											
LAMP3	27074	broad.mit.edu	37	chr3	182853622	182853622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcacttgaaggaatgccCgactgctgtctggaacatca	10	12	2	1	rs150432783		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182853622	A	A	182853622	3	1	9	1	0	0	0	0	1	0	0	0	8691	652	23	1	258	1	LAMP3	3	182853622	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101805	182853622	15168808	5265	13416											
LAMP3	27074	broad.mit.edu	37	chr3	182870222	182870222	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagaaggttggattttcGggtgccacagttcccagagg	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182870222	T	T	182870222	2	4	9	1	0	0	0	0	0	0	0	1	8691	1124	39	1		1	LAMP3	3	182870222	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16600	182870222	15152208	5266	13417											
MCF2L2	23101	broad.mit.edu	37	chr3	183041028	183041028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagctggtactcacagtgcGgtgatttacccactgaccgt	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183041028	T	T	183041028	3	4	9	1	0	0	0	0	1	0	0	0	9473	1116	39	1	2846	1	MCF2L2	3	183041028	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	170806	183041028	14981402	5267	13418											
MCF2L2	23101	broad.mit.edu	37	chr3	183041079	183041079	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtcccccctaattcccGggtcagttggcttttgtcga	9	13	1	0	rs143828868		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183041079	T	T	183041079	2	4	9	1	0	0	0	0	0	0	0	1	9473	1115	39	1		1	MCF2L2	3	183041079	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	183041079	14981351	5268	13419											
KLHL6	89857	broad.mit.edu	37	chr3	183211938	183211938	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaagccgtcaaagcctcCgatcacatagaccttgccac	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183211938	A	A	183211938	4	1	9	1	0	0	0	0	0	1	0	0	8464	661	23	1	598	1	KLHL6	3	183211938	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	170859	183211938	14810492	5269	13420											
KLHL6	89857	broad.mit.edu	37	chr3	183211960	183211960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacatagaccttgccaccCaacaccaccatcttatgcct	3	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183211960	A	A	183211960	3	1	9	1	0	0	0	0	1	0	0	0	8464	593	21	2	620	2	KLHL6	3	183211960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	183211960	14810470	5270	13421											
KLHL6	89857	broad.mit.edu	37	chr3	183245831	183245831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgaatgtgaatcgtgcCgagacccttggttccaggcc	13	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183245831	A	A	183245831	1	1	9	0	1	0	0	0	0	0	0	0	8464	667	23	1		1	KLHL6	3	183245831	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33871	183245831	14776599	5271	13422											
KLHL24	54800	broad.mit.edu	37	chr3	183369013	183369013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttgcatgaagcaagacGgtaccacatacttgggaatg	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183369013	T	T	183369013	3	4	9	1	0	0	0	0	1	0	0	0	8450	1116	39	1	871	1	KLHL24	3	183369013	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	123182	183369013	14653417	5272	13423											
YEATS2	55689	broad.mit.edu	37	chr3	183454551	183454551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggctggggtgagtttccCgtcagagttcaagttcattt	13	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183454551	A	A	183454551	2	1	9	1	0	0	0	0	0	0	0	1	17599	639	23	1		1	YEATS2	3	183454551	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85538	183454551	14567879	5273	13424											
YEATS2	55689	broad.mit.edu	37	chr3	183469923	183469923	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatctatcctcagtcctcGgagtctgacatctctgatgc	8	12	4	2	rs34099456	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183469923	T	T	183469923	2	4	9	1	0	0	0	0	0	0	0	1	17599	1103	39	1		1	YEATS2	3	183469923	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15372	183469923	14552507	5274	13425											
YEATS2	55689	broad.mit.edu	37	chr3	183471854	183471854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttattctttttccacaacGgtaaggttttatttcaaagc	5	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183471854	T	T	183471854	1	4	9	0	1	0	0	0	0	0	0	0	17599	1131	39	1		1	YEATS2	3	183471854	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1931	183471854	14550576	5275	13426											
YEATS2	55689	broad.mit.edu	37	chr3	183479340	183479340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacctctttgcccaattGggagtcaccctaaggttcaa	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183479340	T	T	183479340	3	4	9	1	0	0	0	0	1	0	0	0	17599	1348	47	2	1752	2	YEATS2	3	183479340	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7486	183479340	14543090	5276	13427											
YEATS2	55689	broad.mit.edu	37	chr3	183490034	183490034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgctctctgccaaaacGgtgactgctgttctaagagc	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183490034	T	T	183490034	1	4	9	0	1	0	0	0	0	0	0	0	17599	1131	39	1		1	YEATS2	3	183490034	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10694	183490034	14532396	5277	13428											
MAP6D1	79929	broad.mit.edu	37	chr3	183535838	183535838	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgggttgtgatgactcGggctggttttgtctttgtgg	17	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183535838	T	T	183535838	2	4	9	1	0	0	0	0	0	0	0	1	9357	1124	39	1		1	MAP6D1	3	183535838	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45804	183535838	14486592	5278	13429											
PARL	55486	broad.mit.edu	37	chr3	183547465	183547465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagcggctccctgttcttcCaaatcagttcatgaccgtaa	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183547465	A	A	183547465	3	1	9	1	0	0	0	0	1	0	0	0	11545	595	21	2	82	2	PARL	3	183547465	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11627	183547465	14474965	5279	13430											
ABCC5	10057	broad.mit.edu	37	chr3	183663613	183663613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagaggagtcagatcacGgtaaaaggcctacagcagtc	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183663613	T	T	183663613	1	4	9	0	1	0	0	0	0	0	0	0	56	1131	39	1		1	ABCC5	3	183663613	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	116148	183663613	14358817	5280	13431											
ABCC5	10057	broad.mit.edu	37	chr3	183663722	183663722	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtaaactggaacagcccCgttaactgataatggaaaac	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183663722	A	A	183663722	2	1	9	1	0	0	0	0	0	0	0	1	56	639	23	1		1	ABCC5	3	183663722	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	109	183663722	14358708	5281	13432											
ABCC5	10057	broad.mit.edu	37	chr3	183667611	183667611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatgctggacgtgatgtGggagaggaaaggtgactgcg	18	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183667611	T	T	183667611	3	4	9	1	0	0	0	0	1	0	0	0	56	1348	47	2	1192	2	ABCC5	3	183667611	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3889	183667611	14354819	5282	13433											
ABCC5	10057	broad.mit.edu	37	chr3	183681300	183681300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccaggatgtagatgctcCtgtcactatacaaggcccgg	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183681300	A	A	183681300	3	1	9	1	0	0	0	0	1	0	0	0	56	681	24	2	2269	2	ABCC5	3	183681300	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13689	183681300	14341130	5283	13434											
HTR3E	285242	broad.mit.edu	37	chr3	183818183	183818183	+	Intron	SNP	G	T	T													gttagctttcattttatcacGggcgaccccacgccctgcct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183818183	T	T	183818183	1	4	9	0	1	0	0	0	0	0	0	0	7518	1116	39	1		1	HTR3E	3	183818183	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	136883	183818183	14204247	5284	13435	81	2									
HTR3E	285242	broad.mit.edu	37	chr3	183818191	183818191	+	Intron	SNP	C	A	A													tcattttatcacgggcgaccCcacgccctgccttggggccc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183818191	A	A	183818191	1	1	9	0	1	0	0	0	0	0	0	0	7518	623	22	2		2	HTR3E	3	183818191	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	183818191	14204239	5285	13436	81	2									
HTR3E	285242	broad.mit.edu	37	chr3	183818205	183818205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaccccacgccctgccttGgggcccctctcatataggga	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183818205	T	T	183818205	1	4	9	0	1	0	0	0	0	0	0	0	7518	1339	47	2		2	HTR3E	3	183818205	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	183818205	14204225	5286	13437											
HTR3E	285242	broad.mit.edu	37	chr3	183823111	183823111	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaataacagacgcatccCggaacatccttcagacccat	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183823111	A	A	183823111	2	1	9	1	0	0	0	0	0	0	0	1	7518	643	23	1		1	HTR3E	3	183823111	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4906	183823111	14199319	5287	13438											
EIF2B5	8893	broad.mit.edu	37	chr3	183855812	183855812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatagtaccacaaacagGgttctccattttcagaagac	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183855812	T	T	183855812	3	4	9	1	0	0	0	0	1	0	0	0	5044	1223	43	2	647	2	EIF2B5	3	183855812	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32701	183855812	14166618	5288	13439											
EIF2B5	8893	broad.mit.edu	37	chr3	183858305	183858305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgtgctgacgtcatcCgccgatgggtctaccctctc	10	15	4	1	rs113994063		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183858305	A	A	183858305	3	1	9	1	0	0	0	0	1	0	0	0	5044	652	23	1	969	1	EIF2B5	3	183858305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2493	183858305	14164125	5289	13440											
EIF2B5	8893	broad.mit.edu	37	chr3	183859821	183859821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatgctgaggtcaaggaacGagtgacactgaaaccacgct	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183859821	T	T	183859821	3	4	9	1	0	0	0	0	1	0	0	0	5044	1058	37	3	1295	3	EIF2B5	3	183859821	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1516	183859821	14162609	5290	13441											
DVL3	1857	broad.mit.edu	37	chr3	183885866	183885866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggcagtatgtgcctccCtcatcttcttgccctgtctc	8	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183885866	A	A	183885866	1	1	9	0	1	0	0	0	0	0	0	0	4877	696	24	2		2	DVL3	3	183885866	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26045	183885866	14136564	5291	13442											
AP2M1	1173	broad.mit.edu	37	chr3	183899485	183899485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgcccctgcttgcagcGggaagcaatcaattgccatt	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183899485	T	T	183899485	3	4	9	1	0	0	0	0	1	0	0	0	744	1130	39	1	732	1	AP2M1	3	183899485	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13619	183899485	14122945	5292	13443											
AP2M1	1173	broad.mit.edu	37	chr3	183899576	183899576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcagcatcagctttatccCgccagatggagagtttgagc	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183899576	A	A	183899576	3	1	9	1	0	0	0	0	1	0	0	0	744	652	23	1	823	1	AP2M1	3	183899576	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	91	183899576	14122854	5293	13444											
ABCF3	55324	broad.mit.edu	37	chr3	183911349	183911349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgtgattctggtgtccCacgatgagcgctttatcagg	14	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183911349	A	A	183911349	3	1	9	1	0	0	0	0	1	0	0	0	67	594	21	2	2075	2	ABCF3	3	183911349	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11773	183911349	14111081	5294	13445											
ECE2	9718	broad.mit.edu	37	chr3	184008453	184008453	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctatgcccgcaaccacccCaagtgtgtctgaagcaggag	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184008453	A	A	184008453	2	1	9	1	0	0	0	0	0	0	0	1	4930	581	21	2		2	ECE2	3	184008453	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	97104	184008453	14013977	5295	13446											
PSMD2	5708	broad.mit.edu	37	chr3	184021771	184021771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggcatagtgaactctGgggtccggaatgagtgtgac	15	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184021771	T	T	184021771	3	4	9	1	0	0	0	0	1	0	0	0	12804	1348	47	2	1402	2	PSMD2	3	184021771	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13318	184021771	14000659	5296	13447											
PSMD2	5708	broad.mit.edu	37	chr3	184026143	184026143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcagtcgtatgactgacGggttaaagggtcagcgctga	14	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184026143	T	T	184026143	1	4	9	0	1	0	0	0	0	0	0	0	12804	1131	39	1		1	PSMD2	3	184026143	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4372	184026143	13996287	5297	13448											
PSMD2	5708	broad.mit.edu	37	chr3	184026167	184026167	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagggtcagcgctgaggtGggctctcaatgtttctggcc	14	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184026167	T	T	184026167	1	4	9	0	1	0	0	0	0	0	0	0	12804	1363	47	2		2	PSMD2	3	184026167	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	184026167	13996263	5298	13449											
PSMD2	5708	broad.mit.edu	37	chr3	184026293	184026293	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggctgccatgcagcccCgaatgctggttacgtttgat	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184026293	A	A	184026293	2	1	9	1	0	0	0	0	0	0	0	1	12804	644	23	1		1	PSMD2	3	184026293	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	126	184026293	13996137	5299	13450											
EIF4G1	1981	broad.mit.edu	37	chr3	184039494	184039494	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatctggaaccagaggtGgagtcaagcccagagcttgc	14	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184039494	T	T	184039494	2	4	9	1	0	0	0	0	0	0	0	1	5078	1335	47	2		2	EIF4G1	3	184039494	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13201	184039494	13982936	5300	13451											
EIF4G1	1981	broad.mit.edu	37	chr3	184041273	184041273	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgccacagtgttaatgacCgaagatataaaactgaacaa	7	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184041273	A	A	184041273	2	1	9	1	0	0	0	0	0	0	0	1	5078	639	23	1		1	EIF4G1	3	184041273	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1779	184041273	13981157	5301	13452											
EIF4G1	1981	broad.mit.edu	37	chr3	184042720	184042720	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggctcgggacatagccCggcggcgctctttagggaat	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184042720	A	A	184042720	2	1	9	1	0	0	0	0	0	0	0	1	5078	643	23	1		1	EIF4G1	3	184042720	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1447	184042720	13979710	5302	13453											
EIF4G1	1981	broad.mit.edu	37	chr3	184043519	184043519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttagtgccacgtgtctGggccactgagacaccatgat	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184043519	T	T	184043519	1	4	9	0	1	0	0	0	0	0	0	0	5078	1363	47	2		2	EIF4G1	3	184043519	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	799	184043519	13978911	5303	13454											
EIF4G1	1981	broad.mit.edu	37	chr3	184049157	184049157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgtcgctgaacaggtttGgggatggagttgggttaatt	15	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184049157	T	T	184049157	1	4	9	0	1	0	0	0	0	0	0	0	5078	1363	47	2		2	EIF4G1	3	184049157	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5638	184049157	13973273	5304	13455											
FAM131A	131408	broad.mit.edu	37	chr3	184062465	184062465	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgttgggctccccggccCggctggcctcccagctgctg	15	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184062465	A	A	184062465	2	1	9	1	0	0	0	0	0	0	0	1	5485	643	23	1		1	FAM131A	3	184062465	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13308	184062465	13959965	5305	13456											
POLR2H	5437	broad.mit.edu	37	chr3	184082994	184082994	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgatggtgaatacaacccCactgatgataggccttccag	10	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184082994	A	A	184082994	2	1	9	1	0	0	0	0	0	0	0	1	12316	581	21	2		2	POLR2H	3	184082994	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20529	184082994	13939436	5306	13457											
THPO	7066	broad.mit.edu	37	chr3	184093645	184093645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtcttaccagttacgcGgataaaggggataatgttgg	15	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184093645	T	T	184093645	1	4	9	0	1	0	0	0	0	0	0	0	15995	1131	39	1		1	THPO	3	184093645	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10651	184093645	13928785	5307	13458											
CHRD	8646	broad.mit.edu	37	chr3	184100193	184100193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtctgtggggtgtggcGggcagtgcctcggttgtctc	18	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184100193	T	T	184100193	3	4	9	1	0	0	0	0	1	0	0	0	3403	1116	39	1	742	1	CHRD	3	184100193	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6548	184100193	13922237	5308	13459											
CHRD	8646	broad.mit.edu	37	chr3	184100395	184100395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggggagggtttctgacGggctctcatcatcgtccctt	15	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184100395	T	T	184100395	1	4	9	0	1	0	0	0	0	0	0	0	3403	1131	39	1		1	CHRD	3	184100395	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	202	184100395	13922035	5309	13460											
CHRD	8646	broad.mit.edu	37	chr3	184106428	184106429	+	Missense_Mutation	DNP	CG	AT	AT													ccatgcaggctgatgggcccCggggctgccgttttgctggg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	184106429	AT	AT	184106428	3	1	9	1	0	0	0	0	1	0	0	0	3403	643	23	1	2690	1	CHRD	3	184106428	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	6033	184106428	13916002	5310	13461											
VPS8	23355	broad.mit.edu	37	chr3	184567056	184567056	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacaaaaacttacatcttaGatcaaagaccaaaatacgtg	4	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184567056	T	T	184567056	1	4	9	0	1	0	0	0	0	0	0	0	17345	957	33	3		3	VPS8	3	184567056	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	460628	184567056	13455374	5311	13462											
VPS8	23355	broad.mit.edu	37	chr3	184632826	184632826	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctgaagatctggttccCttggttaaaaaccaggttgg	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184632826	A	A	184632826	2	1	9	1	0	0	0	0	0	0	0	1	17345	668	24	2		2	VPS8	3	184632826	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65770	184632826	13389604	5312	13463											
EHHADH	1962	broad.mit.edu	37	chr3	184910074	184910074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcaggggagggtttccCtgagaagccagtttttttag	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184910074	A	A	184910074	3	1	9	1	0	0	0	0	1	0	0	0	5022	680	24	2	63	2	EHHADH	3	184910074	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	277248	184910074	13112356	5313	13464											
EHHADH	1962	broad.mit.edu	37	chr3	184910258	184910258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaacatcaatgtgctctGggctagcagctatcccttct	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184910258	T	T	184910258	3	4	9	1	0	0	0	0	1	0	0	0	5022	1348	47	2	247	2	EHHADH	3	184910258	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	184	184910258	13112172	5314	13465											
MAP3K13	9175	broad.mit.edu	37	chr3	185183551	185183551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaggcatgcgctggatattCgtgaacactatgagcggaag	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185183551	A	A	185183551	3	1	9	1	0	0	0	0	1	0	0	0	9339	884	31	3	1435	3	MAP3K13	3	185183551	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	273293	185183551	12838879	5315	13466											
MAP3K13	9175	broad.mit.edu	37	chr3	185183579	185183579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgagcggaagcttgagcGggcgaataatttatacatgg	13	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185183579	T	T	185183579	3	4	9	1	0	0	0	0	1	0	0	0	9339	1116	39	1	1463	1	MAP3K13	3	185183579	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	185183579	12838851	5316	13467											
MAP3K13	9175	broad.mit.edu	37	chr3	185198156	185198156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctgataaacttgaagacCgcttggcagagaagctagac	11	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185198156	A	A	185198156	3	1	9	1	0	0	0	0	1	0	0	0	9339	652	23	1	2684	1	MAP3K13	3	185198156	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14577	185198156	12824274	5317	13468											
LIPH	200879	broad.mit.edu	37	chr3	185232279	185232279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcttacattcttgttcCatgttataatatccacaaag	3	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185232279	A	A	185232279	3	1	9	1	0	0	0	0	1	0	0	0	8897	595	21	2	354	2	LIPH	3	185232279	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34123	185232279	12790151	5318	13469											
LIPH	200879	broad.mit.edu	37	chr3	185252731	185252731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaggaggggagcctgttGgcctgaatccatggacaatg	14	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185252731	T	T	185252731	3	4	9	1	0	0	0	0	1	0	0	0	8897	1348	47	2	1152	2	LIPH	3	185252731	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20452	185252731	12769699	5319	13470											
LIPH	200879	broad.mit.edu	37	chr3	185252859	185252859	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcctcacatttagtccCgtaccaaccactgcactgtg	6	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185252859	A	A	185252859	2	1	9	1	0	0	0	0	0	0	0	1	8897	639	23	1		1	LIPH	3	185252859	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	128	185252859	12769571	5320	13471											
SENP2	59343	broad.mit.edu	37	chr3	185318609	185318609	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcagagtgacagttaccCgagatcagccacgcagagtc	11	11	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185318609	A	A	185318609	2	1	9	1	0	0	0	0	0	0	0	1	14160	644	23	1		1	SENP2	3	185318609	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65750	185318609	12703821	5321	13472											
IGF2BP2	10644	broad.mit.edu	37	chr3	185364970	185364970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttggataggttccctcccCgtcaacgtggtgggctcagg	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185364970	A	A	185364970	1	1	9	0	1	0	0	0	0	0	0	0	7644	667	23	1		1	IGF2BP2	3	185364970	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46361	185364970	12657460	5322	13473											
IGF2BP2	10644	broad.mit.edu	37	chr3	185393549	185393549	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcaggtgttccattattGggcatgagtaatctgagtaa	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185393549	T	T	185393549	1	4	9	0	1	0	0	0	0	0	0	0	7644	1363	47	2		2	IGF2BP2	3	185393549	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28579	185393549	12628881	5323	13474											
TRA2B	6434	broad.mit.edu	37	chr3	185643359	185643359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgatcgtctatgggagcGggagcgagaccgtgaccggg	18	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185643359	T	T	185643359	3	4	9	1	0	0	0	0	1	0	0	0	16558	1116	39	1	668	1	TRA2B	3	185643359	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	249810	185643359	12379071	5324	13475											
TRA2B	6434	broad.mit.edu	37	chr3	185643392	185643392	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccgggtataatgccttcGggagcttcttctggatctag	12	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185643392	T	T	185643392	2	4	9	1	0	0	0	0	0	0	0	1	16558	1124	39	1		1	TRA2B	3	185643392	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33	185643392	12379038	5325	13476											
ETV5	2119	broad.mit.edu	37	chr3	185775134	185775134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatttaatcactggacttGggaagagagtcatggctgag	13	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185775134	T	T	185775134	1	4	9	0	1	0	0	0	0	0	0	0	5324	1363	47	2		2	ETV5	3	185775134	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	131742	185775134	12247296	5326	13477											
ETV5	2119	broad.mit.edu	37	chr3	185797625	185797625	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgttctgatggatactGgttttcaggcatcatctttg	9	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185797625	T	T	185797625	3	4	9	1	0	0	0	0	1	0	0	0	5324	1357	47	2	929	2	ETV5	3	185797625	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22491	185797625	12224805	5327	13478											
DGKG	1608	broad.mit.edu	37	chr3	185978269	185978269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggttgaaaacttgtttGgggttgagcagatagtggaa	14	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185978269	T	T	185978269	2	4	9	1	0	0	0	0	0	0	0	1	4509	1335	47	2		2	DGKG	3	185978269	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	180644	185978269	12044161	5328	13479											
DGKG	1608	broad.mit.edu	37	chr3	186024697	186024697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgttcttacctcatgtGggtcatattgtttgaggctc	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186024697	T	T	186024697	3	4	9	1	0	0	0	0	1	0	0	0	4509	1348	47	2	2330	2	DGKG	3	186024697	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46428	186024697	11997733	5329	13480											
HRG	3273	broad.mit.edu	37	chr3	186383948	186383948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatcaataaaaggcgacGggatggctaccttttccaat	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186383948	T	T	186383948	3	4	9	1	0	0	0	0	1	0	0	0	7421	1116	39	1	130	1	HRG	3	186383948	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	359251	186383948	11638482	5330	13481											
HRG	3273	broad.mit.edu	37	chr3	186387733	186387733	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctttcttacaggtgatcGgacaatgtaaggtaatagct	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186387733	T	T	186387733	4	4	9	1	0	0	0	0	0	1	0	0	7421	1117	39	1	317	1	HRG	3	186387733	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3785	186387733	11634697	5331	13482											
HRG	3273	broad.mit.edu	37	chr3	186394861	186394861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaacatcaatggtgtacCgcctcatttgggacatccct	9	11	2	1	rs143855375	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186394861	A	A	186394861	3	1	9	1	0	0	0	0	1	0	0	0	7421	652	23	1	793	1	HRG	3	186394861	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7128	186394861	11627569	5332	13483											
ADIPOQ	9370	broad.mit.edu	37	chr3	186572408	186572408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctggctccaggtgtatgGggaaggagagcgtaatggac	17	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186572408	T	T	186572408	3	4	9	1	0	0	0	0	1	0	0	0	317	1232	43	2	656	2	ADIPOQ	3	186572408	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	177547	186572408	11450022	5333	13484											
ADIPOQ	9370	broad.mit.edu	37	chr3	186572533	186572533	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccaggccaaacagcccCaaagtcaattaaaggctttc	6	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186572533	A	A	186572533	1	1	9	0	1	0	0	0	0	0	0	0	317	609	21	2		2	ADIPOQ	3	186572533	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	125	186572533	11449897	5334	13485											
RTP1	132112	broad.mit.edu	37	chr3	186917807	186917807	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcttgttttgggccacGgtcctgctgctgatcatcta	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186917807	T	T	186917807	2	4	9	1	0	0	0	0	0	0	0	1	13844	1103	39	1		1	RTP1	3	186917807	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	345274	186917807	11104623	5335	13486											
MASP1	5648	broad.mit.edu	37	chr3	186959297	186959297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgggtaggcttctcccCaatactttattcatccagac	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186959297	A	A	186959297	3	1	9	1	0	0	0	0	1	0	0	0	9414	593	21	2	1740	2	MASP1	3	186959297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41490	186959297	11063133	5336	13487											
MASP1	5648	broad.mit.edu	37	chr3	186968072	186968072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcttgttactccacgtccCatccttcagacactcaatct	3	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186968072	A	A	186968072	3	1	9	1	0	0	0	0	1	0	0	0	9414	594	21	2	2023	2	MASP1	3	186968072	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8775	186968072	11054358	5337	13488											
MASP1	5648	broad.mit.edu	37	chr3	186970996	186970996	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagccccggttctctccCgagttgtcactatggaacag	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186970996	A	A	186970996	2	1	9	1	0	0	0	0	0	0	0	1	9414	639	23	1		1	MASP1	3	186970996	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2924	186970996	11051434	5338	13489											
SST	6750	broad.mit.edu	37	chr3	187386909	187386909	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccagctttgcgttctcGgggtgccatagccgggtttg	15	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187386909	T	T	187386909	2	4	9	1	0	0	0	0	0	0	0	1	15314	1124	39	1		1	SST	3	187386909	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	415913	187386909	10635521	5339	13490											
SST	6750	broad.mit.edu	37	chr3	187387015	187387015	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccagggcatcattctcCgtctggttgggttcagacag	13	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187387015	A	A	187387015	2	1	9	1	0	0	0	0	0	0	0	1	15314	639	23	1		1	SST	3	187387015	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	187387015	10635415	5340	13491											
LPP	4026	broad.mit.edu	37	chr3	188590501	188590501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggccaggaggagactgtcCgtattgtggctttggatcga	16	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188590501	A	A	188590501	3	1	9	1	0	0	0	0	1	0	0	0	9010	652	23	1	1690	1	LPP	3	188590501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1203486	188590501	9431929	5341	13492											
CLDN1	9076	broad.mit.edu	37	chr3	190026083	190026083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcacacgtagtctttccCgctggaaggtgcaggttttg	13	9	2	0	rs141397566		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190026083	A	A	190026083	3	1	9	1	0	0	0	0	1	0	0	0	3502	652	23	1	20	1	CLDN1	3	190026083	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1435582	190026083	7996347	5342	13493											
CLDN1	9076	broad.mit.edu	37	chr3	190030685	190030685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagaaatatcgcaccccCaatgacagccatcctcatct	5	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190030685	A	A	190030685	3	1	9	1	0	0	0	0	1	0	0	0	3502	594	21	2	283	2	CLDN1	3	190030685	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4602	190030685	7991745	5343	13494											
CLDN1	9076	broad.mit.edu	37	chr3	190030808	190030808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaccaccatcaaggcacGggttgcttgcaatgtgcctg	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190030808	T	T	190030808	3	4	9	1	0	0	0	0	1	0	0	0	3502	1116	39	1	406	1	CLDN1	3	190030808	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	123	190030808	7991622	5344	13495											
CLDN16	10686	broad.mit.edu	37	chr3	190120105	190120105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatgaattgtttcacacGgtgtcttctctaacatctag	7	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190120105	T	T	190120105	1	4	9	0	1	0	0	0	0	0	0	0	3508	1131	39	1		1	CLDN16	3	190120105	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	89297	190120105	7902325	5345	13496											
IL1RAP	3556	broad.mit.edu	37	chr3	190366259	190366259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagaaaatatggcctctcGgggcaacatcaacgtcattt	8	11	3	1	rs148316157		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190366259	T	T	190366259	3	4	9	1	0	0	0	0	1	0	0	0	7730	1116	39	1	1536	1	IL1RAP	3	190366259	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	246154	190366259	7656171	5346	13497											
UTS2D	257313	broad.mit.edu	37	chr3	190999925	190999925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgtaaaaaactcaacacGgataacaaagttaggagtcc	8	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190999925	T	T	190999925	2	4	9	1	0	0	0	0	0	0	0	1	17232	1103	39	1		1	UTS2D	3	190999925	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	633666	190999925	7022505	5347	13498											
CCDC50	152137	broad.mit.edu	37	chr3	191087789	191087789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagagttccctgcaaccCgtgcttatgcagatagttac	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191087789	A	A	191087789	3	1	9	1	0	0	0	0	1	0	0	0	2848	652	23	1	430	1	CCDC50	3	191087789	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87864	191087789	6934641	5348	13499											
CCDC50	152137	broad.mit.edu	37	chr3	191107225	191107225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcttgcaatccagtaagaGgggtggagttgtagtaagcg	15	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191107225	T	T	191107225	1	4	9	0	1	0	0	0	0	0	0	0	2848	1015	35	2		2	CCDC50	3	191107225	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19436	191107225	6915205	5349	13500											
CCDC50	152137	broad.mit.edu	37	chr3	191107331	191107331	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaagatgcggattacactCattttacaaaccagcagagt	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191107331	A	A	191107331	3	1	9	1	0	0	0	0	1	0	0	0	2848	826	29	3	1411	3	CCDC50	3	191107331	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	191107331	6915099	5350	13501											
FGF12	2257	broad.mit.edu	37	chr3	191888335	191888335	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccttctttattgagtccCagaaaccaagctcggcctga	8	12	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191888335	A	A	191888335	2	1	9	1	0	0	0	0	0	0	0	1	5898	581	21	2		2	FGF12	3	191888335	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	781004	191888335	6134095	5351	13502											
FGF12	2257	broad.mit.edu	37	chr3	191888349	191888349	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcccagaaaccaagctcGgcctgattcttgctggcggt	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191888349	T	T	191888349	2	4	9	1	0	0	0	0	0	0	0	1	5898	1124	39	1		1	FGF12	3	191888349	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	191888349	6134081	5352	13503											
FGF12	2257	broad.mit.edu	37	chr3	191888367	191888367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcctgattcttgctggcGgtacagtgtggaagaataga	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191888367	T	T	191888367	3	4	9	1	0	0	0	0	1	0	0	0	5898	1116	39	1	246	1	FGF12	3	191888367	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18	191888367	6134063	5353	13504											
FGF12	2257	broad.mit.edu	37	chr3	192125874	192125874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcactttgctgaacacccCgaggacgtgcctctcgcaca	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192125874	A	A	192125874	3	1	9	1	0	0	0	0	1	0	0	0	5898	652	23	1	612	1	FGF12	3	192125874	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	237507	192125874	5896556	5354	13505											
HRASLS	57110	broad.mit.edu	37	chr3	192988400	192988400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttccttataggccaaccGagcgataagtaccgttgagt	10	9	0	1	rs143919256		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192988400	T	T	192988400	3	4	9	1	0	0	0	0	1	0	0	0	7416	1058	37	3	423	3	HRASLS	3	192988400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	862526	192988400	5034030	5355	13506											
HRASLS	57110	broad.mit.edu	37	chr3	192988448	192988448	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctgctgttggtgtcttctCattcctgggcttgtttccaa	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192988448	A	A	192988448	4	1	9	1	0	0	0	0	0	1	0	0	7416	838	29	3	471	3	HRASLS	3	192988448	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	192988448	5033982	5356	13507											
ATP13A5	344905	broad.mit.edu	37	chr3	192994553	192994553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttacctctacaaagaaagCcacacagaattgggtgaggg	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192994553	A	A	192994553	3	1	9	1	0	0	0	0	1	0	0	0	1131	739	26	3	280	3	ATP13A5	3	192994553	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6105	192994553	5027877	5357	13508											
ATP13A5	344905	broad.mit.edu	37	chr3	193032626	193032626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacatgtttttaggtaaGggactacagggtaacaaatt	10	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193032626	T	T	193032626	1	4	9	0	1	0	0	0	0	0	0	0	1131	1015	35	2		2	ATP13A5	3	193032626	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38073	193032626	4989804	5358	13509											
ATP13A5	344905	broad.mit.edu	37	chr3	193036829	193036829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatctttaaggttttgtGggcaagagcaatgacacgga	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193036829	T	T	193036829	3	4	9	1	0	0	0	0	1	0	0	0	1131	1348	47	2	1726	2	ATP13A5	3	193036829	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4203	193036829	4985601	5359	13510											
ATP13A5	344905	broad.mit.edu	37	chr3	193036882	193036882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaactcctcagttcctgtGggaaattcttgggcactgcc	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193036882	T	T	193036882	3	4	9	1	0	0	0	0	1	0	0	0	1131	1348	47	2	1779	2	ATP13A5	3	193036882	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	193036882	4985548	5360	13511											
ATP13A5	344905	broad.mit.edu	37	chr3	193082053	193082053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccgtacattgtggtccCggtaaccaaacacctcctgg	8	14	0	0	rs78621247		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193082053	A	A	193082053	3	1	9	1	0	0	0	0	1	0	0	0	1131	652	23	1	3690	1	ATP13A5	3	193082053	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45171	193082053	4940377	5361	13512											
ATP13A4	84239	broad.mit.edu	37	chr3	193160250	193160250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatagatgctgatgaggaccCggtggtttcatttgcctcaa	11	8	2	3	rs143770329		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193160250	A	A	193160250	3	1	9	1	0	0	0	0	1	0	0	0	1130	652	23	1	1390	1	ATP13A4	3	193160250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78197	193160250	4862180	5362	13513											
ATP13A4	84239	broad.mit.edu	37	chr3	193176912	193176912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggtccagagggtctccCtggatggtcccatcaagaag	13	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193176912	A	A	193176912	3	1	9	1	0	0	0	0	1	0	0	0	1130	680	24	2	2026	2	ATP13A4	3	193176912	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16662	193176912	4845518	5363	13514											
ATP13A4	84239	broad.mit.edu	37	chr3	193201747	193201747	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctcccacatacagagacCgtaatgctattatgtgactc	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193201747	A	A	193201747	2	1	9	1	0	0	0	0	0	0	0	1	1130	639	23	1		1	ATP13A4	3	193201747	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24835	193201747	4820683	5364	13515											
OPA1	4976	broad.mit.edu	37	chr3	193333492	193333492	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtggaaagatatgataccGgaccttagtgaatataaatg	10	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193333492	T	T	193333492	2	4	9	1	0	0	0	0	0	0	0	1	10965	1103	39	1		1	OPA1	3	193333492	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131745	193333492	4688938	5365	13516											
OPA1	4976	broad.mit.edu	37	chr3	193353350	193353350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttattctcaaaattttacCgcttaacgttgtgtgttcat	6	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193353350	A	A	193353350	1	1	9	0	1	0	0	0	0	0	0	0	10965	667	23	1		1	OPA1	3	193353350	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19858	193353350	4669080	5366	13517											
LRRC15	131578	broad.mit.edu	37	chr3	194080161	194080161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcggcaatggccagccCgctctgggcctgggtcatgc	15	13	2	0	rs141299685		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194080161	A	A	194080161	3	1	9	1	0	0	0	0	1	0	0	0	9057	652	23	1	137	1	LRRC15	3	194080161	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	726811	194080161	3942269	5367	13518											
LRRC15	131578	broad.mit.edu	37	chr3	194081214	194081214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaccctgggtgagatgtGggtgaggctattcttgccca	15	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194081214	T	T	194081214	3	4	9	1	0	0	0	0	1	0	0	0	9057	1348	47	2	1190	2	LRRC15	3	194081214	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1053	194081214	3941216	5368	13519											
LRRC15	131578	broad.mit.edu	37	chr3	194081274	194081274	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccaggtggtcgaaggctcCgtcagggatgtattccaggt	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194081274	A	A	194081274	4	1	9	1	0	0	0	0	0	1	0	0	9057	661	23	1	1250	1	LRRC15	3	194081274	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	194081274	3941156	5369	13520											
GP5	2814	broad.mit.edu	37	chr3	194117404	194117404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcaaacacgatgatcacGgtgatcatggcctgaacagc	10	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194117404	T	T	194117404	2	4	9	1	0	0	0	0	0	0	0	1	6648	1103	39	1		1	GP5	3	194117404	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36130	194117404	3905026	5370	13521											
GP5	2814	broad.mit.edu	37	chr3	194117476	194117476	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgatcttgacctttgccCgtggtcaccggctgggccca	11	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	194117476	G	G	194117476	2	3	9	1	0	0	0	0	0	0	0	1	6648	639	23	4		4	GP5	3	194117476	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	194117476	3904954	5371	13522											
GP5	2814	broad.mit.edu	37	chr3	194118321	194118321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccgggtgcgatggaacGgatgtgatttcggtggaact	17	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194118321	T	T	194118321	3	4	9	1	0	0	0	0	1	0	0	0	6648	1116	39	1	995	1	GP5	3	194118321	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	845	194118321	3904109	5372	13523											
LSG1	55341	broad.mit.edu	37	chr3	194362716	194362716	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacagtgctagtgtcttGggacggttccacaggcaaca	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194362716	T	T	194362716	1	4	9	0	1	0	0	0	0	0	0	0	9136	1363	47	2		2	LSG1	3	194362716	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	244395	194362716	3659714	5373	13524											
LSG1	55341	broad.mit.edu	37	chr3	194379780	194379780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacatggcccaggcactcCgctgctcagcagtcagcaag	11	14	2	0	rs147988904		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194379780	A	A	194379780	3	1	9	1	0	0	0	0	1	0	0	0	9136	652	23	1	1343	1	LSG1	3	194379780	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17064	194379780	3642650	5374	13525											
C3orf21	152002	broad.mit.edu	37	chr3	194877256	194877256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattcctcaaacaactccCggatgttggtcttaaacttc	5	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194877256	A	A	194877256	3	1	9	1	0	0	0	0	1	0	0	0	2236	652	23	1	482	1	C3orf21	3	194877256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	497476	194877256	3145174	5375	13526											
APOD	347	broad.mit.edu	37	chr3	195298129	195298129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtccctgaatcctcctGggaaaagtggatacttacac	8	12	0	1	rs146386236	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195298129	T	T	195298129	1	4	9	0	1	0	0	0	0	0	0	0	803	1363	47	2		2	APOD	3	195298129	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	420873	195298129	2724301	5376	13527											
MUC4	4585	broad.mit.edu	37	chr3	195487926	195487926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtgagtagaaaacagGggtgaagttggaaggcagct	16	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195487926	T	T	195487926	3	4	9	1	0	0	0	0	1	0	0	0	10072	1232	43	2	1601	2	MUC4	3	195487926	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	189797	195487926	2534504	5377	13528											
MUC4	4585	broad.mit.edu	37	chr3	195492043	195492043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggggctgccaggggcGgggtgggaacaagcaggggc	23	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195492043	T	T	195492043	1	4	9	0	1	0	0	0	0	0	0	0	10072	1131	39	1		1	MUC4	3	195492043	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4117	195492043	2530387	5378	13529											
MUC4	4585	broad.mit.edu	37	chr3	195516350	195516350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggttgtgtgaccatcccCggtgggagctggggcaaagg	18	9	0	1	rs139285983	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195516350	A	A	195516350	3	1	9	1	0	0	0	0	1	0	0	0	10072	652	23	1		1	MUC4	3	195516350	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24307	195516350	2506080	5379	13530											
MUC4	4585	broad.mit.edu	37	chr3	195516523	195516523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattcttgtgtggtctgcGgggcttgagtgtgacccctt	15	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195516523	T	T	195516523	3	4	9	1	0	0	0	0	1	0	0	0	10072	1116	39	1		1	MUC4	3	195516523	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	173	195516523	2505907	5380	13531											
MUC4	4585	broad.mit.edu	37	chr3	195516675	195516675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagatggggatgtggcCgtttttatcatctgagtcac	13	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195516675	A	A	195516675	2	1	9	1	0	0	0	0	0	0	0	1	10072	639	23	1		1	MUC4	3	195516675	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	152	195516675	2505755	5381	13532											
MUC4	4585	broad.mit.edu	37	chr3	195517165	195517165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacagagtgtctgaccacCatatggttgaaactttggaa	10	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195517165	A	A	195517165	3	1	9	1	0	0	0	0	1	0	0	0	10072	595	21	2		2	MUC4	3	195517165	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	490	195517165	2505265	5382	13533											
TNK2	10188	broad.mit.edu	37	chr3	195605199	195605199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaaagtcctgaagggccCgcatgtctgtgggctgggcc	14	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195605199	A	A	195605199	3	1	9	1	0	0	0	0	1	0	0	0	16441	652	23	1	2012	1	TNK2	3	195605199	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88034	195605199	2417231	5383	13534											
TNK2	10188	broad.mit.edu	37	chr3	195605333	195605333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctccagcaggaagtccCgcagggccacaaacgtgggt	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195605333	A	A	195605333	3	1	9	1	0	0	0	0	1	0	0	0	16441	652	23	1	2052	1	TNK2	3	195605333	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	195605333	2417097	5384	13535											
TFRC	7037	broad.mit.edu	37	chr3	195780347	195780347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgttttctcagcattcCcgaaatctgttgttagtctg	8	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195780347	A	A	195780347	3	1	9	1	0	0	0	0	1	0	0	0	15935	623	22	2	308	2	TFRC	3	195780347	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175014	195780347	2242083	5385	13536											
TFRC	7037	broad.mit.edu	37	chr3	195780378	195780378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttagtctggaagtagcacGgaagaagtctccacgagcag	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195780378	T	T	195780378	3	4	9	1	0	0	0	0	1	0	0	0	15935	1116	39	1	339	1	TFRC	3	195780378	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	195780378	2242052	5386	13537											
TFRC	7037	broad.mit.edu	37	chr3	195792518	195792518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagttattgttccttgccCagggtttactcctgtccagt	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195792518	A	A	195792518	1	1	9	0	1	0	0	0	0	0	0	0	15935	609	21	2		2	TFRC	3	195792518	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12140	195792518	2229912	5387	13538											
TFRC	7037	broad.mit.edu	37	chr3	195802078	195802078	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccatagcagatacttcCactacacctttttggttttg	6	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195802078	A	A	195802078	4	1	9	1	0	0	0	0	0	1	0	0	15935	603	21	2	2160	2	TFRC	3	195802078	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9560	195802078	2220352	5388	13539											
PCYT1A	5130	broad.mit.edu	37	chr3	195984751	195984751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaaaggagctggttgcCgtaagcccttaagaaatgga	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195984751	A	A	195984751	3	1	9	1	0	0	0	0	1	0	0	0	11704	652	23	1	1006	1	PCYT1A	3	195984751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	182673	195984751	2037679	5389	13540											
TCTEX1D2	255758	broad.mit.edu	37	chr3	196018246	196018246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacgcagaataaactgtcCtaaaaaataaatacaacaca	3	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196018246	A	A	196018246	1	1	9	0	1	0	0	0	0	0	0	0	15842	695	24	2		2	TCTEX1D2	3	196018246	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33495	196018246	2004184	5390	13541											
UBXN7	26043	broad.mit.edu	37	chr3	196134247	196134247	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcaagcatatgttttcCtacactttcacttgcacctg	5	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196134247	A	A	196134247	4	1	9	1	0	0	0	0	0	1	0	0	17044	690	24	2	1418	2	UBXN7	3	196134247	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116001	196134247	1888183	5391	13542											
RNF168	165918	broad.mit.edu	37	chr3	196199127	196199127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaatctatcagtttttGggtaaagtttatttctgttt	6	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196199127	T	T	196199127	3	4	9	1	0	0	0	0	1	0	0	0	13570	1357	47	2	440	2	RNF168	3	196199127	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64880	196199127	1823303	5392	13543											
RNF168	165918	broad.mit.edu	37	chr3	196210747	196210748	+	Nonsense_Mutation	DNP	CC	AA	AA													gggagaagccgagatacttcCctcacagaaattgttcttca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	196210748	AA	AA	196210747	4	1	9	1	0	0	0	0	0	1	0	0	13570	632	22	2	1153	2	RNF168	3	196210747	Nonsense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	11620	196210747	1811683	5393	13544											
WDR53	348793	broad.mit.edu	37	chr3	196281604	196281604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgactgtgggccttcCatttcttctgtttcatcctc	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196281604	A	A	196281604	3	1	9	1	0	0	0	0	1	0	0	0	17432	594	21	2	525	2	WDR53	3	196281604	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70857	196281604	1740826	5394	13545											
WDR53	348793	broad.mit.edu	37	chr3	196281651	196281651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtaatccagagtggtcGggctttttgaagactccaca	10	8	0	3	rs150731771		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196281651	T	T	196281651	2	4	9	1	0	0	0	0	0	0	0	1	17432	1124	39	1		1	WDR53	3	196281651	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47	196281651	1740779	5395	13546											
PAK2	5062	broad.mit.edu	37	chr3	196534663	196534663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccacagatttacacacGgtctgtaattgaccctgttc	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196534663	T	T	196534663	3	4	9	1	0	0	0	0	1	0	0	0	11495	1116	39	1	609	1	PAK2	3	196534663	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	253012	196534663	1487767	5396	13547											
PAK2	5062	broad.mit.edu	37	chr3	196555215	196555215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgaaactggccaaacCgttatctagcttgacaccac	6	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196555215	A	A	196555215	3	1	9	1	0	0	0	0	1	0	0	0	11495	652	23	1	1568	1	PAK2	3	196555215	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20552	196555215	1467215	5397	13548											
PAK2	5062	broad.mit.edu	37	chr3	196555271	196555271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagcaatgaagagtaacCgttaacatcactgctgtggc	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196555271	A	A	196555271	3	1	9	1	0	0	0	0	1	0	0	0	11495	652	23	1	1624	1	PAK2	3	196555271	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	196555271	1467159	5398	13549											
MFI2	4241	broad.mit.edu	37	chr3	196730940	196730940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcgaacattttgaaccCgttcttattgtggtcgtctc	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196730940	A	A	196730940	3	1	9	1	0	0	0	0	1	0	0	0	9615	652	23	1	255	1	MFI2	3	196730940	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175669	196730940	1291490	5399	13550											
MFI2	4241	broad.mit.edu	37	chr3	196746551	196746551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcctggggcctgtgaacGggagcccatttccaggcttg	14	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196746551	T	T	196746551	1	4	9	0	1	0	0	0	0	0	0	0	9615	1103	39	1		1	MFI2	3	196746551	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15611	196746551	1275879	5400	13551											
DLG1	1739	broad.mit.edu	37	chr3	196803457	196803457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggatccacatacttacGgtcagcatcacttgtttcct	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196803457	T	T	196803457	1	4	9	0	1	0	0	0	0	0	0	0	4594	1130	39	1		1	DLG1	3	196803457	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	56906	196803457	1218973	5401	13552											
DLG1	1739	broad.mit.edu	37	chr3	197009653	197009653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttgaattggttcagacGgctttgaacgatctatacat	10	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197009653	T	T	197009653	3	4	9	1	0	0	0	0	1	0	0	0	4594	1116	39	1	2695	1	DLG1	3	197009653	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	206196	197009653	1012777	5402	13553											
DLG1	1739	broad.mit.edu	37	chr3	197023988	197023988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacaaacgattctaaaacGgcaatcaaaaaactgacaca	4	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197023988	T	T	197023988	1	4	9	0	1	0	0	0	0	0	0	0	4594	1131	39	1		1	DLG1	3	197023988	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14335	197023988	998442	5403	13554											
KIAA0226	9711	broad.mit.edu	37	chr3	197431394	197431394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagcacagatgacagtcCtaagtggcctctacctacct	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197431394	A	A	197431394	1	1	9	0	1	0	0	0	0	0	0	0	8232	696	24	2		2	KIAA0226	3	197431394	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	407406	197431394	591036	5404	13555											
LRCH3	84859	broad.mit.edu	37	chr3	197556526	197556526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggattatgataggagacCgttgggttttggctcctggt	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197556526	A	A	197556526	3	1	9	1	0	0	0	0	1	0	0	0	9021	652	23	1	891	1	LRCH3	3	197556526	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125132	197556526	465904	5405	13556											
LRCH3	84859	broad.mit.edu	37	chr3	197577312	197577312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttcttcagtttcttctGggatatctttttcttctggg	8	7	7	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197577312	T	T	197577312	1	4	9	0	1	0	0	0	0	0	0	0	9021	1363	47	2		2	LRCH3	3	197577312	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20786	197577312	445118	5406	13557											
LRCH3	84859	broad.mit.edu	37	chr3	197577422	197577422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcatgtatgggttaatcCgaccatgagctctgtaggtc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197577422	A	A	197577422	1	1	9	0	1	0	0	0	0	0	0	0	9021	667	23	1		1	LRCH3	3	197577422	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	110	197577422	445008	5407	13558											
LRCH3	84859	broad.mit.edu	37	chr3	197598256	197598256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagcagctctaactgacGgtgttgttctttgccatttg	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197598256	T	T	197598256	3	4	9	1	0	0	0	0	1	0	0	0	9021	1116	39	1	2127	1	LRCH3	3	197598256	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20834	197598256	424174	5408	13559											
IQCG	84223	broad.mit.edu	37	chr3	197639555	197639555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggacccacctgctgctcCtttctaaggaacatttcaat	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197639555	A	A	197639555	3	1	9	1	0	0	0	0	1	0	0	0	7880	680	24	2	393	2	IQCG	3	197639555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41299	197639555	382875	5409	13560											
IQCG	84223	broad.mit.edu	37	chr3	197670838	197670838	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtattccttcttcttctacGgtactaggtggttcgcctgt	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197670838	T	T	197670838	2	4	9	1	0	0	0	0	0	0	0	1	7880	1103	39	1		1	IQCG	3	197670838	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31283	197670838	351592	5410	13561											
IQCG	84223	broad.mit.edu	37	chr3	197670868	197670868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcgcctgtcactgacacCgtcatctcagaatgccaaac	8	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197670868	A	A	197670868	2	1	9	1	0	0	0	0	0	0	0	1	7880	639	23	1		1	IQCG	3	197670868	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	197670868	351562	5411	13562											
LMLN	89782	broad.mit.edu	37	chr3	197762765	197762765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcatatttgtgtagtcGggctgggcaggtcctccctg	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197762765	T	T	197762765	3	4	9	1	0	0	0	0	1	0	0	0	8921	1116	39	1	1891	1	LMLN	3	197762765	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91897	197762765	259665	5412	13563											
ZNF595	152687	broad.mit.edu	37	chr4	86541	86541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttacttggtcctcatccCttaataaacataagagaatt	4	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86541	A	A	86541	3	1	9	1	0	0	0	0	1	0	0	0	18152	668	24	2	1160	2	ZNF595	4	86541	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08		86541	191067735	5413	13564											
ZNF141	7700	broad.mit.edu	37	chr4	367156	367156	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatactggagagaaaccCtacaaatgtgaagaatgtgg	10	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	367156	A	A	367156	2	1	9	1	0	0	0	0	0	0	0	1	17856	668	24	2		2	ZNF141	4	367156	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	280615	367156	190787120	5414	13565											
PIGG	54872	broad.mit.edu	37	chr4	502690	502690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgaaacaggaagtcacGgggcctcctccaccgaggag	13	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	502690	T	T	502690	3	4	9	1	0	0	0	0	1	0	0	0	11983	1116	39	1	850	1	PIGG	4	502690	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	135534	502690	190651586	5415	13566											
PIGG	54872	broad.mit.edu	37	chr4	509796	509796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagcacgtccaacagacGgatgtggctgcgacactggc	12	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	509796	T	T	509796	2	4	9	1	0	0	0	0	0	0	0	1	11983	1103	39	1		1	PIGG	4	509796	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7106	509796	190644480	5416	13567											
PIGG	54872	broad.mit.edu	37	chr4	517253	517253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccttttcacagaacccCatgcatcccagctcaaggtg	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	517253	A	A	517253	2	1	9	1	0	0	0	0	0	0	0	1	11983	581	21	2		2	PIGG	4	517253	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7457	517253	190637023	5417	13568											
PIGG	54872	broad.mit.edu	37	chr4	517450	517450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagatgacggtgagcctcCgtgtggcctctgtgtggaac	17	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	517450	A	A	517450	3	1	9	1	0	0	0	0	1	0	0	0	11983	652	23	1	1851	1	PIGG	4	517450	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	197	517450	190636826	5418	13569											
MYL5	4636	broad.mit.edu	37	chr4	674346	674346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccttcaagatgctggaccCggacgggaaagggaaaatca	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	674346	A	A	674346	3	1	9	1	0	0	0	0	1	0	0	0	10144	652	23	1	359	1	MYL5	4	674346	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	156896	674346	190479930	5419	13570											
TMEM175	84286	broad.mit.edu	37	chr4	952104	952104	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgagcaggttcagtgtGggcatcttccacctcatgca	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	952104	T	T	952104	2	4	9	1	0	0	0	0	0	0	0	1	16214	1335	47	2		2	TMEM175	4	952104	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	277758	952104	190202172	5420	13571											
RNF212	285498	broad.mit.edu	37	chr4	1090137	1090137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccacaccccccacagctcCacggtctcgggatagcgcac	8	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1090137	A	A	1090137	1	1	9	0	1	0	0	0	0	0	0	0	13587	609	21	2		2	RNF212	4	1090137	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	138033	1090137	190064139	5421	13572											
RNF212	285498	broad.mit.edu	37	chr4	1090524	1090524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgcacctggctcatcacGgaaccaagccacacccctca	7	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1090524	T	T	1090524	1	4	9	0	1	0	0	0	0	0	0	0	13587	1131	39	1		1	RNF212	4	1090524	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	387	1090524	190063752	5422	13573											
SPON2	10417	broad.mit.edu	37	chr4	1164120	1164120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcagagccttaggttcGggtttggtggtcgccctgtg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1164120	T	T	1164120	1	4	9	0	1	0	0	0	0	0	0	0	15201	1131	39	1		1	SPON2	4	1164120	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	73596	1164120	189990156	5423	13574											
SPON2	10417	broad.mit.edu	37	chr4	1164150	1164150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgccctgtggcagggttcGgggctgctgtgtgtcccatg	17	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1164150	T	T	1164150	1	4	9	0	1	0	0	0	0	0	0	0	15201	1131	39	1		1	SPON2	4	1164150	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	1164150	189990126	5424	13575											
SPON2	10417	broad.mit.edu	37	chr4	1165547	1165547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccgacgtcagcacgcccCagactgggaagcgccgccgt	12	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1165547	A	A	1165547	1	1	9	0	1	0	0	0	0	0	0	0	15201	609	21	2		2	SPON2	4	1165547	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1397	1165547	189988729	5425	13576											
SPON2	10417	broad.mit.edu	37	chr4	1165716	1165716	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtctggctccacttgccCgtgaaggtgatgctgtattt	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1165716	A	A	1165716	2	1	9	1	0	0	0	0	0	0	0	1	15201	639	23	1		1	SPON2	4	1165716	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	169	1165716	189988560	5426	13577											
KIAA1530	57654	broad.mit.edu	37	chr4	1360197	1360197	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtatgagccacacatcccCgaccacttgcggcctgagta	11	14	0	2	rs151254049	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1360197	A	A	1360197	2	1	9	1	0	0	0	0	0	0	0	1	8311	639	23	1		1	KIAA1530	4	1360197	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	194481	1360197	189794079	5427	13578											
CRIPAK	285464	broad.mit.edu	37	chr4	1388799	1388799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgccgacgtggagtgccCgcctgctcacacgtgcccat	12	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1388799	A	A	1388799	3	1	9	1	0	0	0	0	1	0	0	0	3909	652	23	1	502	1	CRIPAK	4	1388799	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28602	1388799	189765477	5428	13579											
CRIPAK	285464	broad.mit.edu	37	chr4	1388830	1388830	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgcccatgtggagtgccCgcctgctcacacgtgccaac	11	16	1	0	rs147934929	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1388830	A	A	1388830	2	1	9	1	0	0	0	0	0	0	0	1	3909	639	23	1		1	CRIPAK	4	1388830	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	1388830	189765446	5429	13580											
CRIPAK	285464	broad.mit.edu	37	chr4	1389047	1389047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgcccatgtggagtgccCgcctgctcacgtgccgatgt	13	14	1	0	rs139487863		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1389047	A	A	1389047	3	1	9	1	0	0	0	0	1	0	0	0	3909	652	23	1	750	1	CRIPAK	4	1389047	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	217	1389047	189765229	5430	13581											
CRIPAK	285464	broad.mit.edu	37	chr4	1389294	1389294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgtggagtgcccgcctGctcacacacatgccgatgtg	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1389294	T	T	1389294	3	4	9	1	0	0	0	0	1	0	0	0	3909	1319	46	3	997	3	CRIPAK	4	1389294	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	247	1389294	189764982	5431	13582											
FAM53A	152877	broad.mit.edu	37	chr4	1643246	1643246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggccccgggagtcacatGgggaggacagaaccgtcttc	16	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1643246	T	T	1643246	3	4	9	1	0	0	0	0	1	0	0	0	5630	1348	47	2	229	2	FAM53A	4	1643246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	253952	1643246	189511030	5432	13583											
SLBP	7884	broad.mit.edu	37	chr4	1698110	1698110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattattctagcacatgccCacatgccactcacatttcca	4	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1698110	A	A	1698110	1	1	9	0	1	0	0	0	0	0	0	0	14485	609	21	2		2	SLBP	4	1698110	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54864	1698110	189456166	5433	13584											
SLBP	7884	broad.mit.edu	37	chr4	1705399	1705399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtcagagcatctggaacGgggtttagggccttcaggag	15	9	3	1	rs41286667	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1705399	T	T	1705399	3	4	9	1	0	0	0	0	1	0	0	0	14485	1116	39	1	631	1	SLBP	4	1705399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7289	1705399	189448877	5434	13585											
TMEM129	92305	broad.mit.edu	37	chr4	1719959	1719959	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgggcaagttcgagtctggCgagagctcatgctgccgaga	15	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1719959	G	G	1719959	2	3	9	1	0	0	0	0	0	0	0	1	16165	755	27	4		4	TMEM129	4	1719959	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14560	1719959	189434317	5435	13586											
TACC3	10460	broad.mit.edu	37	chr4	1729302	1729302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtggggggtggagaacGggaagccgtgccaagggtga	22	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1729302	T	T	1729302	1	4	9	0	1	0	0	0	0	0	0	0	15622	1131	39	1		1	TACC3	4	1729302	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9343	1729302	189424974	5436	13587											
TACC3	10460	broad.mit.edu	37	chr4	1729401	1729401	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctaacctcaccaggtactCgctgcttcacgttgattaag	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1729401	A	A	1729401	1	1	9	0	1	0	0	0	0	0	0	0	15622	899	31	3		3	TACC3	4	1729401	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	99	1729401	189424875	5437	13588											
TACC3	10460	broad.mit.edu	37	chr4	1729456	1729456	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagctcatcaaggaagtGgatgccaaaactactcatgg	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1729456	T	T	1729456	2	4	9	1	0	0	0	0	0	0	0	1	15622	1335	47	2		2	TACC3	4	1729456	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55	1729456	189424820	5438	13589											
FGFR3	2261	broad.mit.edu	37	chr4	1806227	1806227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccgtgcacaagatctccCgcttcccgctcaagcgacag	8	18	2	1	rs146114742		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1806227	A	A	1806227	3	1	9	1	0	0	0	0	1	0	0	0	5924	652	23	1	1431	1	FGFR3	4	1806227	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76771	1806227	189348049	5439	13590											
WHSC1	7468	broad.mit.edu	37	chr4	1944106	1944106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaagttggatttgaaccCagctgctctgtactgcactt	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1944106	A	A	1944106	1	1	9	0	1	0	0	0	0	0	0	0	17489	594	21	2		2	WHSC1	4	1944106	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	137879	1944106	189210170	5440	13591											
WHSC1	7468	broad.mit.edu	37	chr4	1961302	1961302	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccttgtggctttgattcGgagtgtctgaacaggatgct	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1961302	T	T	1961302	2	4	9	1	0	0	0	0	0	0	0	1	17489	1103	39	1		1	WHSC1	4	1961302	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17196	1961302	189192974	5441	13592											
WHSC1	7468	broad.mit.edu	37	chr4	1976361	1976361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccctgtcctgtcctcccCggcgctcactaaggctcggt	10	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1976361	A	A	1976361	1	1	9	0	1	0	0	0	0	0	0	0	17489	667	23	1		1	WHSC1	4	1976361	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15059	1976361	189177915	5442	13593											
POLN	353497	broad.mit.edu	37	chr4	2172442	2172442	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgggtatttctgcaacccCgttctggggagactgttcct	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2172442	A	A	2172442	2	1	9	1	0	0	0	0	0	0	0	1	12302	639	23	1		1	POLN	4	2172442	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	196081	2172442	188981834	5443	13594											
ZFYVE28	57732	broad.mit.edu	37	chr4	2307216	2307216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgggaaatgcagaggttcCgttccagcgtgtgcagctcc	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2307216	A	A	2307216	3	1	9	1	0	0	0	0	1	0	0	0	17796	652	23	1	1836	1	ZFYVE28	4	2307216	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134774	2307216	188847060	5444	13595											
FAM193A	8603	broad.mit.edu	37	chr4	2641566	2641566	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcagagcaacttgccCgcactggtgtcacagatcag	9	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2641566	A	A	2641566	2	1	9	1	0	0	0	0	0	0	0	1	5571	639	23	1		1	FAM193A	4	2641566	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	334350	2641566	188512710	5445	13596											
FAM193A	8603	broad.mit.edu	37	chr4	2661447	2661447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcccattggaccttcactGggctgagtggaggcctagaa	14	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2661447	T	T	2661447	1	4	9	0	1	0	0	0	0	0	0	0	5571	1363	47	2		2	FAM193A	4	2661447	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19881	2661447	188492829	5446	13597											
FAM193A	8603	broad.mit.edu	37	chr4	2664892	2664892	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctgatgatgaagaagcGgacggcgagagtagtgggga	19	4	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2664892	T	T	2664892	2	4	9	1	0	0	0	0	0	0	0	1	5571	1103	39	1		1	FAM193A	4	2664892	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3445	2664892	188489384	5447	13598											
FAM193A	8603	broad.mit.edu	37	chr4	2733459	2733459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcaccagcttggttgtGggctgtttccttcagtgact	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2733459	T	T	2733459	1	4	9	0	1	0	0	0	0	0	0	0	5571	1363	47	2		2	FAM193A	4	2733459	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	68567	2733459	188420817	5448	13599											
SH3BP2	6452	broad.mit.edu	37	chr4	2834707	2834707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgtcagcctcccgcttcCgtcctgtaggtcctggttgt	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2834707	A	A	2834707	1	1	9	0	1	0	0	0	0	0	0	0	14358	667	23	1		1	SH3BP2	4	2834707	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	101248	2834707	188319569	5449	13600											
ADD1	118	broad.mit.edu	37	chr4	2909471	2909471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgttcttgatattacagtGgactaaagaggatggacata	10	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2909471	T	T	2909471	3	4	9	1	0	0	0	0	1	0	0	0	304	1362	47	2	1546	2	ADD1	4	2909471	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74764	2909471	188244805	5450	13601											
ADD1	118	broad.mit.edu	37	chr4	2929908	2929908	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccactagaccttgtgccGgagccgactactggagatga	11	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2929908	T	T	2929908	2	4	9	1	0	0	0	0	0	0	0	1	304	1103	39	1		1	ADD1	4	2929908	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20437	2929908	188224368	5451	13602											
NOP14	8602	broad.mit.edu	37	chr4	2940651	2940651	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttactttccgctttctttcCgcatccctaaaagaaacaaa	3	12	1	1	rs142100620		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2940651	A	A	2940651	2	1	9	1	0	0	0	0	0	0	0	1	10631	639	23	1		1	NOP14	4	2940651	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10743	2940651	188213625	5452	13603											
NOP14	8602	broad.mit.edu	37	chr4	2949956	2949956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattctggcattcatatacGgggctatgctgacactccca	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2949956	T	T	2949956	1	4	9	0	1	0	0	0	0	0	0	0	10631	1131	39	1		1	NOP14	4	2949956	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9305	2949956	188204320	5453	13604											
NOP14	8602	broad.mit.edu	37	chr4	2951766	2951766	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgctcttttgctggcttctCgttttcttcctcactctcca	5	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2951766	A	A	2951766	4	1	9	1	0	0	0	0	0	1	0	0	10631	893	31	3	1440	3	NOP14	4	2951766	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1810	2951766	188202510	5454	13605											
NOP14	8602	broad.mit.edu	37	chr4	2953960	2953960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagaaggggctgtggacGgacagcagcacagccctgct	16	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2953960	T	T	2953960	1	4	9	0	1	0	0	0	0	0	0	0	10631	1131	39	1		1	NOP14	4	2953960	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2194	2953960	188200316	5455	13606											
NOP14	8602	broad.mit.edu	37	chr4	2956215	2956215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgggacttcggtttctccCgctcctcgccttcctgttga	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2956215	A	A	2956215	3	1	9	1	0	0	0	0	1	0	0	0	10631	652	23	1	2085	1	NOP14	4	2956215	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2255	2956215	188198061	5456	13607											
NOP14	8602	broad.mit.edu	37	chr4	2959372	2959372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcatcatcttctcctcGgggctcatgttgctgttgta	8	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2959372	T	T	2959372	2	4	9	1	0	0	0	0	0	0	0	1	10631	1103	39	1		1	NOP14	4	2959372	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3157	2959372	188194904	5457	13608											
GRK4	2868	broad.mit.edu	37	chr4	2990600	2990600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatattgagcaaccaccCaatcttatgcttttgaaaat	4	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2990600	A	A	2990600	1	1	9	0	1	0	0	0	0	0	0	0	6857	609	21	2		2	GRK4	4	2990600	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31228	2990600	188163676	5458	13609											
GRK4	2868	broad.mit.edu	37	chr4	3015328	3015328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggtctctgccagtgaGggtctcatcaagcaaagagc	12	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3015328	T	T	3015328	1	4	9	0	1	0	0	0	0	0	0	0	6857	1015	35	2		2	GRK4	4	3015328	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24728	3015328	188138948	5459	13610											
GRK4	2868	broad.mit.edu	37	chr4	3021472	3021472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttacaacctgggcaatccCggctttgatgagcagagagc	11	10	0	3	rs141637189		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3021472	A	A	3021472	2	1	9	1	0	0	0	0	0	0	0	1	6857	639	23	1		1	GRK4	4	3021472	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6144	3021472	188132804	5460	13611											
GRK4	2868	broad.mit.edu	37	chr4	3039198	3039198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaagacttctatgctcGgtttgctaccgggtgtgtct	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3039198	T	T	3039198	3	4	9	1	0	0	0	0	1	0	0	0	6857	1116	39	1	1559	1	GRK4	4	3039198	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17726	3039198	188115078	5461	13612											
HTT	3064	broad.mit.edu	37	chr4	3109063	3109063	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgaacaagcaagagaccCgaagaatcagtccaggagac	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3109063	A	A	3109063	2	1	9	1	0	0	0	0	0	0	0	1	7527	639	23	1		1	HTT	4	3109063	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	69865	3109063	188045213	5462	13613											
HTT	3064	broad.mit.edu	37	chr4	3134402	3134402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccatcctcagcaggtccCgcttccacgtgggagattgg	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3134402	A	A	3134402	3	1	9	1	0	0	0	0	1	0	0	0	7527	652	23	1	2416	1	HTT	4	3134402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25339	3134402	188019874	5463	13614											
HTT	3064	broad.mit.edu	37	chr4	3134425	3134425	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccacgtgggagattggatGggcaccattagaaccctcac	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3134425	C	C	3134425	3	2	9	1	0	0	0	0	1	0	0	0	7527	1348	47	4	2439	4	HTT	4	3134425	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	3134425	188019851	5464	13615											
HTT	3064	broad.mit.edu	37	chr4	3148726	3148726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacttggattttgatttcCttagggggaatgggggtggt	17	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3148726	A	A	3148726	1	1	9	0	1	0	0	0	0	0	0	0	7527	696	24	2		2	HTT	4	3148726	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14301	3148726	188005550	5465	13616											
HTT	3064	broad.mit.edu	37	chr4	3174003	3174003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaggattcgtacaataacGggtcatctctgagtcgctta	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3174003	T	T	3174003	1	4	9	0	1	0	0	0	0	0	0	0	7527	1131	39	1		1	HTT	4	3174003	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25277	3174003	187980273	5466	13617											
HTT	3064	broad.mit.edu	37	chr4	3213764	3213764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtgaggtgactctggccCgtgtgagcggcaccgtgcag	16	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3213764	A	A	3213764	3	1	9	1	0	0	0	0	1	0	0	0	7527	652	23	1	6713	1	HTT	4	3213764	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39761	3213764	187940512	5467	13618											
HTT	3064	broad.mit.edu	37	chr4	3214157	3214157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtgcagtcctgtggacGgatgtgtagatgtgccactg	14	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3214157	T	T	3214157	1	4	9	0	1	0	0	0	0	0	0	0	7527	1131	39	1		1	HTT	4	3214157	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	393	3214157	187940119	5468	13619											
HTT	3064	broad.mit.edu	37	chr4	3221878	3221878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtcctgactcaactcGgatgatgtcacttccttttc	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3221878	T	T	3221878	1	4	9	0	1	0	0	0	0	0	0	0	7527	1131	39	1		1	HTT	4	3221878	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7721	3221878	187932398	5469	13620											
C4orf44	345222	broad.mit.edu	37	chr4	3265716	3265716	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtggatgtgtcgggccCgctctggagtctgcatcctg	15	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3265716	A	A	3265716	1	1	9	0	1	0	0	0	0	0	0	0	2295	667	23	1		1	C4orf44	4	3265716	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	43838	3265716	187888560	5470	13621											
RGS12	6002	broad.mit.edu	37	chr4	3429821	3429821	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttcttatgtttagcatcCgcagataaacagaaaggtgt	9	7	1	2	rs145782949	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3429821	A	A	3429821	2	1	9	1	0	0	0	0	0	0	0	1	13404	639	23	1		1	RGS12	4	3429821	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	164105	3429821	187724455	5471	13622											
LRPAP1	4043	broad.mit.edu	37	chr4	3520695	3520695	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttgtccagttcttcgccGgagaatttcccagaggtctt	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3520695	T	T	3520695	2	4	9	1	0	0	0	0	0	0	0	1	9051	1103	39	1		1	LRPAP1	4	3520695	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	90874	3520695	187633581	5472	13623											
LRPAP1	4043	broad.mit.edu	37	chr4	3526710	3526710	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctttagtttcttccaggcGagttcgtccctctcctgtat	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3526710	T	T	3526710	2	4	9	1	0	0	0	0	0	0	0	1	9051	1045	37	3		3	LRPAP1	4	3526710	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6015	3526710	187627566	5473	13624											
OTOP1	133060	broad.mit.edu	37	chr4	4199765	4199765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtagaggtagtagatccCgtgggagatggcagtgcaca	18	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4199765	A	A	4199765	3	1	9	1	0	0	0	0	1	0	0	0	11399	652	23	1	1050	1	OTOP1	4	4199765	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	673055	4199765	186954511	5474	13625											
ZBTB49	166793	broad.mit.edu	37	chr4	4317666	4317666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcacagaattcggcacacGggggagcggccttacagctg	14	11	0	1	rs148977658		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4317666	T	T	4317666	2	4	9	1	0	0	0	0	0	0	0	1	17676	1103	39	1		1	ZBTB49	4	4317666	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	117901	4317666	186836610	5475	13626											
STX18	53407	broad.mit.edu	37	chr4	4509123	4509123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctatcacaatctttgttccCgttcctccactgaaatcttt	4	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4509123	A	A	4509123	1	1	9	0	1	0	0	0	0	0	0	0	15459	667	23	1		1	STX18	4	4509123	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	191457	4509123	186645153	5476	13627											
CYTL1	54360	broad.mit.edu	37	chr4	5018666	5018666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcgaggccacaaagtccCgcagcttgtccagcacacag	13	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5018666	A	A	5018666	3	1	9	1	0	0	0	0	1	0	0	0	4241	652	23	1	194	1	CYTL1	4	5018666	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	509543	5018666	186135610	5477	13628											
CYTL1	54360	broad.mit.edu	37	chr4	5021011	5021011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgtcctgagcgggcggGggactcaccgagggctccga	16	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021011	T	T	5021011	1	4	9	0	1	0	0	0	0	0	0	0	4241	1247	43	2		2	CYTL1	4	5021011	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2345	5021011	186133265	5478	13629											
EVC2	132884	broad.mit.edu	37	chr4	5578055	5578055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttcagaatccacctcccCaggttcgttcagaatcccgg	7	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5578055	A	A	5578055	3	1	9	1	0	0	0	0	1	0	0	0	5328	594	21	2	762	2	EVC2	4	5578055	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	557044	5578055	185576221	5479	13630											
EVC2	132884	broad.mit.edu	37	chr4	5617246	5617246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcttttactcttggacCgtgactttctcaccttggac	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5617246	A	A	5617246	3	1	9	1	0	0	0	0	1	0	0	0	5328	652	23	1	1222	1	EVC2	4	5617246	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39191	5617246	185537030	5480	13631											
EVC2	132884	broad.mit.edu	37	chr4	5687153	5687153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaggctctccccgttccCgaggtctccagcctggagcg	12	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5687153	A	A	5687153	3	1	9	1	0	0	0	0	1	0	0	0	5328	652	23	1	3234	1	EVC2	4	5687153	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69907	5687153	185467123	5481	13632											
EVC2	132884	broad.mit.edu	37	chr4	5696067	5696067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacttaatacttaccaggcGgtgtgttataggagactctc	10	8	1	1	rs148388393		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5696067	T	T	5696067	3	4	9	1	0	0	0	0	1	0	0	0	5328	1116	39	1	3561	1	EVC2	4	5696067	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8914	5696067	185458209	5482	13633											
CRMP1	1400	broad.mit.edu	37	chr4	5827221	5827221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccactctttcctacCtgataagctgaagttggact	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827221	A	A	5827221	3	1	9	1	0	0	0	0	1	0	0	0	3922	695	24	2	99	2	CRMP1	4	5827221	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131154	5827221	185327055	5483	13634											
CRMP1	1400	broad.mit.edu	37	chr4	5837599	5837599	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctttaaaaatgattacaacGaagaatcacttatctcagca	4	8	3	2	rs41269565	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5837599	T	T	5837599	1	4	9	0	1	0	0	0	0	0	0	0	3922	1073	37	3		3	CRMP1	4	5837599	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10378	5837599	185316677	5484	13635											
JAKMIP1	152789	broad.mit.edu	37	chr4	6062230	6062230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcagcttgtagctgctccCgagtctggaagggaaaagac	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6062230	A	A	6062230	3	1	9	1	0	0	0	0	1	0	0	0	8010	652	23	1	1049	1	JAKMIP1	4	6062230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	224631	6062230	185092046	5485	13636											
JAKMIP1	152789	broad.mit.edu	37	chr4	6080572	6080572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtctgcttcaggaCccctctgtaaaacctcccca	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6080572	A	A	6080572	1	1	9	0	1	0	0	0	0	0	0	0	8010	522	18	3		3	JAKMIP1	4	6080572	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18342	6080572	185073704	5486	13637											
JAKMIP1	152789	broad.mit.edu	37	chr4	6082077	6082077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaccaccacagggttaccCgccaacagtgtttgttaggg	11	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6082077	A	A	6082077	1	1	9	0	1	0	0	0	0	0	0	0	8010	667	23	1		1	JAKMIP1	4	6082077	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1505	6082077	185072199	5487	13638											
WFS1	7466	broad.mit.edu	37	chr4	6302559	6302559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcgccttcttcatccCgctggtcatcttctacctgt	5	16	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6302559	A	A	6302559	3	1	9	1	0	0	0	0	1	0	0	0	17487	652	23	1	1063	1	WFS1	4	6302559	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	220482	6302559	184851717	5488	13639											
WFS1	7466	broad.mit.edu	37	chr4	6303385	6303385	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggccagcttctctgtggtGgggatggtgaagtccctgac	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6303385	T	T	6303385	2	4	9	1	0	0	0	0	0	0	0	1	17487	1335	47	2		2	WFS1	4	6303385	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	826	6303385	184850891	5489	13640											
PPP2R2C	5522	broad.mit.edu	37	chr4	6335258	6335258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatagggaaaaaagacccGggattgggggtctcctgctg	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6335258	T	T	6335258	1	4	9	0	1	0	0	0	0	0	0	0	12487	1131	39	1		1	PPP2R2C	4	6335258	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31873	6335258	184819018	5490	13641											
PPP2R2C	5522	broad.mit.edu	37	chr4	6473910	6473910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcacatagctgtggtccCgcaggaagctgtggttaatt	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6473910	A	A	6473910	3	1	9	1	0	0	0	0	1	0	0	0	12487	652	23	1	1406	1	PPP2R2C	4	6473910	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138652	6473910	184680366	5491	13642											
KIAA0232	9778	broad.mit.edu	37	chr4	6843761	6843761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtagtgtccaagttagccCtggtcatttaacctggtgca	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6843761	A	A	6843761	1	1	9	0	1	0	0	0	0	0	0	0	8233	696	24	2		2	KIAA0232	4	6843761	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	369851	6843761	184310515	5492	13643											
KIAA0232	9778	broad.mit.edu	37	chr4	6865656	6865656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaggttaaaaaaatctGggatggaaaagagtgctcag	11	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6865656	T	T	6865656	3	4	9	1	0	0	0	0	1	0	0	0	8233	1348	47	2	3565	2	KIAA0232	4	6865656	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21895	6865656	184288620	5493	13644											
TADA2B	93624	broad.mit.edu	37	chr4	7056044	7056044	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcgggatgattacgagatcGagtatgaccaggatgccgag	15	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7056044	T	T	7056044	4	4	9	1	0	0	0	0	0	1	0	0	15630	1059	37	3	532	3	TADA2B	4	7056044	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	190388	7056044	184098232	5494	13645											
TADA2B	93624	broad.mit.edu	37	chr4	7056116	7056116	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgacgacgacgtggagatcGagctgaagcgcgcccacgtg	15	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7056116	T	T	7056116	4	4	9	1	0	0	0	0	0	1	0	0	15630	1059	37	3	604	3	TADA2B	4	7056116	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	72	7056116	184098160	5495	13646											
SORCS2	57537	broad.mit.edu	37	chr4	7668921	7668921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgtcctgatgaagctgcCgaagtatgcattgccaaagg	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7668921	A	A	7668921	3	1	9	1	0	0	0	0	1	0	0	0	15045	652	23	1	1172	1	SORCS2	4	7668921	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	612805	7668921	183485355	5496	13647											
SORCS2	57537	broad.mit.edu	37	chr4	7714482	7714482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttggccacatcagcttcCgctccgattgggagctggtc	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7714482	A	A	7714482	3	1	9	1	0	0	0	0	1	0	0	0	15045	652	23	1	1949	1	SORCS2	4	7714482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45561	7714482	183439794	5497	13648											
AFAP1	60312	broad.mit.edu	37	chr4	7780583	7780583	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccccattagacgccacGgggggctttttacccttgag	12	12	0	3	rs145858850		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7780583	T	T	7780583	2	4	9	1	0	0	0	0	0	0	0	1	353	1103	39	1		1	AFAP1	4	7780583	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66101	7780583	183373693	5498	13649											
AFAP1	60312	broad.mit.edu	37	chr4	7795483	7795483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcatagtgcagagcctccGggtctgtggacgatcccgtc	13	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7795483	T	T	7795483	3	4	9	1	0	0	0	0	1	0	0	0	353	1116	39	1	1139	1	AFAP1	4	7795483	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14900	7795483	183358793	5499	13650											
AFAP1	60312	broad.mit.edu	37	chr4	7795500	7795500	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgggtctgtggacgatccCgtctctgcgagtaaaatccc	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7795500	A	A	7795500	2	1	9	1	0	0	0	0	0	0	0	1	353	639	23	1		1	AFAP1	4	7795500	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	7795500	183358776	5500	13651											
AFAP1	60312	broad.mit.edu	37	chr4	7873683	7873683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaatgagactcacctttGgatgactgtattcttagcag	9	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7873683	T	T	7873683	2	4	9	1	0	0	0	0	0	0	0	1	353	1335	47	2		2	AFAP1	4	7873683	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	78183	7873683	183280593	5501	13652											
SH3TC1	54436	broad.mit.edu	37	chr4	8233712	8233712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgcccaggccagctgcGggccgtccagcggctgtgcc	14	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8233712	T	T	8233712	3	4	9	1	0	0	0	0	1	0	0	0	14374	1116	39	1	3006	1	SH3TC1	4	8233712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	360029	8233712	182920564	5502	13653											
ACOX3	8310	broad.mit.edu	37	chr4	8407704	8407704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatccagaccgttctgccCgagtttttttcctatgtcgc	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8407704	A	A	8407704	3	1	9	1	0	0	0	0	1	0	0	0	160	652	23	1	1396	1	ACOX3	4	8407704	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	173992	8407704	182746572	5503	13654											
C4orf23	152992	broad.mit.edu	37	chr4	8456564	8456564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtctttattacgcatgccCttgatctcagcatggcttag	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8456564	A	A	8456564	1	1	9	0	1	0	0	0	0	0	0	0	2279	696	24	2		2	C4orf23	4	8456564	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	48860	8456564	182697712	5504	13655											
C4orf23	152992	broad.mit.edu	37	chr4	8477699	8477699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggagctgcggccacccCggaccaccccgaggaagaag	14	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8477699	A	A	8477699	2	1	9	1	0	0	0	0	0	0	0	1	2279	643	23	1		1	C4orf23	4	8477699	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21135	8477699	182676577	5505	13656											
DRD5	1816	broad.mit.edu	37	chr4	9784721	9784721	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaactcctcactcaacccCgtcatctatgccttcaacgc	4	18	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9784721	A	A	9784721	2	1	9	1	0	0	0	0	0	0	0	1	4800	639	23	1		1	DRD5	4	9784721	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1307022	9784721	181369555	5506	13657											
ZNF518B	85460	broad.mit.edu	37	chr4	10445732	10445732	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtggatatatttgttgatGagtaagctgtctattaccag	11	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10445732	T	T	10445732	3	4	9	1	0	0	0	0	1	0	0	0	18090	1290	45	3	1007	3	ZNF518B	4	10445732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	661011	10445732	180708544	5507	13658											
ZNF518B	85460	broad.mit.edu	37	chr4	10447207	10447207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttattttgaaatgtagtcCgtggattggaagcttttaga	10	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10447207	A	A	10447207	3	1	9	1	0	0	0	0	1	0	0	0	18090	652	23	1	2482	1	ZNF518B	4	10447207	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1475	10447207	180707069	5508	13659											
ZNF518B	85460	broad.mit.edu	37	chr4	10447513	10447513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctttttgtactgcagcGggtcctttgtagagaatcga	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10447513	T	T	10447513	3	4	9	1	0	0	0	0	1	0	0	0	18090	1116	39	1	2788	1	ZNF518B	4	10447513	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	306	10447513	180706763	5509	13660											
BOD1L	259282	broad.mit.edu	37	chr4	13601296	13601296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttgtggactgatggccCgttgtgcccctcctcggtgc	15	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13601296	A	A	13601296	3	1	9	1	0	0	0	0	1	0	0	0	1489	652	23	1	1995	1	BOD1L	4	13601296	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3153783	13601296	177552980	5510	13661											
BOD1L	259282	broad.mit.edu	37	chr4	13603393	13603393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctcatcatatttccctGggagccatccacctcttcac	4	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13603393	T	T	13603393	3	4	9	1	0	0	0	0	1	0	0	0	1489	1357	47	2	4092	2	BOD1L	4	13603393	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2097	13603393	177550883	5511	13662											
BOD1L	259282	broad.mit.edu	37	chr4	13604871	13604871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgggttctttctccccaGggttcattttggacacagca	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13604871	T	T	13604871	3	4	9	1	0	0	0	0	1	0	0	0	1489	1000	35	2	5570	2	BOD1L	4	13604871	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1478	13604871	177549405	5512	13663											
BOD1L	259282	broad.mit.edu	37	chr4	13605302	13605302	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcttgtgacaagcttcctctCcgattttcgcacaaccttct	5	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13605302	T	T	13605302	2	4	9	1	0	0	0	0	0	0	0	1	1489	842	30	4		4	BOD1L	4	13605302	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	431	13605302	177548974	5513	13664											
BOD1L	259282	broad.mit.edu	37	chr4	13605566	13605566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctctatgactagaatcCttctgtgtactatgtgctga	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13605566	A	A	13605566	3	1	9	1	0	0	0	0	1	0	0	0	1489	680	24	2	6265	2	BOD1L	4	13605566	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	264	13605566	177548710	5514	13665											
BOD1L	259282	broad.mit.edu	37	chr4	13606554	13606554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgataacaggggtagatgtcCgtcttttatgttctctttct	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13606554	A	A	13606554	3	1	9	1	0	0	0	0	1	0	0	0	1489	652	23	1	7253	1	BOD1L	4	13606554	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	988	13606554	177547722	5515	13666											
BOD1L	259282	broad.mit.edu	37	chr4	13612649	13612649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtggacatacgcatgcCgtacactttttgtttttcct	8	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13612649	A	A	13612649	3	1	9	1	0	0	0	0	1	0	0	0	1489	652	23	1	7839	1	BOD1L	4	13612649	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6095	13612649	177541627	5516	13667											
CPEB2	132864	broad.mit.edu	37	chr4	15060880	15060880	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctcagcctttggatcccCgaaaaacaatttttgttgga	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15060880	A	A	15060880	2	1	9	1	0	0	0	0	0	0	0	1	3833	644	23	1		1	CPEB2	4	15060880	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1448231	15060880	176093396	5517	13668											
CPEB2	132864	broad.mit.edu	37	chr4	15067857	15067857	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtggaaaatttgctccCtttttttgtgccaatgtcac	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15067857	A	A	15067857	2	1	9	1	0	0	0	0	0	0	0	1	3833	668	24	2		2	CPEB2	4	15067857	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6977	15067857	176086419	5518	13669											
C1QTNF7	114905	broad.mit.edu	37	chr4	15443813	15443813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgagaggtaagactggacCgctaggtcttgccggtgaga	15	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15443813	A	A	15443813	3	1	9	1	0	0	0	0	1	0	0	0	1988	652	23	1	291	1	C1QTNF7	4	15443813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	375956	15443813	175710463	5519	13670											
FGFBP1	9982	broad.mit.edu	37	chr4	15937508	15937508	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtatacagagggacttaCgacatgacatctcttaaggg	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15937508	T	T	15937508	1	4	9	0	1	0	0	0	0	0	0	0	5917	551	19	4		4	FGFBP1	4	15937508	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	493695	15937508	175216768	5520	13671											
PROM1	8842	broad.mit.edu	37	chr4	15989238	15989238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctagcattctttgtgtGgtattttataacaaaacccc	5	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15989238	T	T	15989238	1	4	9	0	1	0	0	0	0	0	0	0	12661	1363	47	2		2	PROM1	4	15989238	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51730	15989238	175165038	5521	13672											
PROM1	8842	broad.mit.edu	37	chr4	16026873	16026873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgctatctgccagtttcCgactccttttgatccgggtt	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16026873	A	A	16026873	3	1	9	1	0	0	0	0	1	0	0	0	12661	652	23	1	2113	1	PROM1	4	16026873	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37635	16026873	175127403	5522	13673											
PROM1	8842	broad.mit.edu	37	chr4	16037268	16037268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaaaacagaaatgaaacGgatcatttaaaaatcttcac	6	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16037268	T	T	16037268	1	4	9	0	1	0	0	0	0	0	0	0	12661	1131	39	1		1	PROM1	4	16037268	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10395	16037268	175117008	5523	13674											
LDB2	9079	broad.mit.edu	37	chr4	16504228	16504228	+	3'UTR	SNP	C	A	A													ttgcaattgtaatgatcaccCacgggcctattgacagtgga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16504228	A	A	16504228	1	1	9	0	1	0	0	0	0	0	0	0	8768	609	21	2		2	LDB2	4	16504228	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	466960	16504228	174650048	5524	13675	82	2									
LDB2	9079	broad.mit.edu	37	chr4	16504231	16504231	+	3'UTR	SNP	G	T	T													caattgtaatgatcacccacGggcctattgacagtggattc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16504231	T	T	16504231	1	4	9	0	1	0	0	0	0	0	0	0	8768	1131	39	1		1	LDB2	4	16504231	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	3	16504231	174650045	5525	13676	82	2									
LDB2	9079	broad.mit.edu	37	chr4	16504356	16504356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgttgttccccagcgcGggtgaattgttgaagtcctc	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16504356	T	T	16504356	2	4	9	1	0	0	0	0	0	0	0	1	8768	1103	39	1		1	LDB2	4	16504356	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	125	16504356	174649920	5526	13677											
QDPR	5860	broad.mit.edu	37	chr4	17488845	17488845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggtttttccctgtgatcCagtcatggaaagttctggaa	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17488845	A	A	17488845	3	1	9	1	0	0	0	0	1	0	0	0	12980	595	21	2	94	2	QDPR	4	17488845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	984489	17488845	173665431	5527	13678											
LAP3	51056	broad.mit.edu	37	chr4	17585107	17585107	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcctctgtcttttcaagcGgggtgcaggcagattcaaga	11	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17585107	T	T	17585107	2	4	9	1	0	0	0	0	0	0	0	1	8695	1130	39	1		1	LAP3	4	17585107	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96262	17585107	173569169	5528	13679											
LAP3	51056	broad.mit.edu	37	chr4	17600099	17600099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgataacactgatgctgaGgggaggctcatactggctga	14	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17600099	T	T	17600099	3	4	9	1	0	0	0	0	1	0	0	0	8695	991	35	2	1136	2	LAP3	4	17600099	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14992	17600099	173554177	5529	13680											
SLIT2	9353	broad.mit.edu	37	chr4	20525511	20525511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaccttttcacctcttcGggccattcaaactatgtatg	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20525511	T	T	20525511	3	4	9	1	0	0	0	0	1	0	0	0	14854	1116	39	1	1309	1	SLIT2	4	20525511	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2925412	20525511	170628765	5530	13681											
SLIT2	9353	broad.mit.edu	37	chr4	20544175	20544175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctactgaatgtacttgcttGgatacagtcgtccgatgtag	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20544175	T	T	20544175	3	4	9	1	0	0	0	0	1	0	0	0	14854	1339	47	2	2284	2	SLIT2	4	20544175	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18664	20544175	170610101	5531	13682											
SLIT2	9353	broad.mit.edu	37	chr4	20544188	20544188	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcttggatacagtcgtcCgatgtagcaacaagggtttg	12	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20544188	A	A	20544188	2	1	9	1	0	0	0	0	0	0	0	1	14854	644	23	1		1	SLIT2	4	20544188	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	20544188	170610088	5532	13683											
SLIT2	9353	broad.mit.edu	37	chr4	20555427	20555427	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtggtgttgtttttccaGagcaattggagccaaccctc	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20555427	T	T	20555427	5	4	9	1	0	0	0	0	0	0	1	0	14854	956	33	3	2663	3	SLIT2	4	20555427	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	11239	20555427	170598849	5533	13684											
SLIT2	9353	broad.mit.edu	37	chr4	20597314	20597314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccattacctgcttgttcCaacagatgtgactgcacacc	6	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20597314	A	A	20597314	1	1	9	0	1	0	0	0	0	0	0	0	14854	609	21	2		2	SLIT2	4	20597314	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	41887	20597314	170556962	5534	13685											
SLIT2	9353	broad.mit.edu	37	chr4	20620477	20620477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaccaagaaggtgtccCgattagagtgcagaggtggg	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20620477	A	A	20620477	2	1	9	1	0	0	0	0	0	0	0	1	14854	644	23	1		1	SLIT2	4	20620477	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23163	20620477	170533799	5535	13686											
PACRGL	133015	broad.mit.edu	37	chr4	20714410	20714410	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctcttggtctttgtcaGggtctgagagagactaagca	11	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20714410	T	T	20714410	5	4	9	1	0	0	0	0	0	0	1	0	11465	1014	35	2	384	2	PACRGL	4	20714410	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	93933	20714410	170439866	5536	13687											
PACRGL	133015	broad.mit.edu	37	chr4	20728952	20728952	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattccaacatactgctcCatatgctgttgaagaaggga	8	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20728952	A	A	20728952	2	1	9	1	0	0	0	0	0	0	0	1	11465	581	21	2		2	PACRGL	4	20728952	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14542	20728952	170425324	5537	13688											
KCNIP4	80333	broad.mit.edu	37	chr4	20731759	20731759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatgttttcatcctgtaaGggagaaacacagagcgatta	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20731759	T	T	20731759	1	4	9	0	1	0	0	0	0	0	0	0	8112	1015	35	2		2	KCNIP4	4	20731759	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2807	20731759	170422517	5538	13689											
KCNIP4	80333	broad.mit.edu	37	chr4	20852067	20852067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgaaatatacatatgatGgggctctcatagaatgggat	11	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20852067	T	T	20852067	1	4	9	0	1	0	0	0	0	0	0	0	8112	1363	47	2		2	KCNIP4	4	20852067	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	120308	20852067	170302209	5539	13690											
GPR125	166647	broad.mit.edu	37	chr4	22389553	22389553	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaatttctgctacttttGggaagtgtgctacaagcatc	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22389553	T	T	22389553	2	4	9	1	0	0	0	0	0	0	0	1	6704	1335	47	2		2	GPR125	4	22389553	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1537486	22389553	168764723	5540	13691											
GPR125	166647	broad.mit.edu	37	chr4	22404414	22404414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgtatagttcagatccCgtcaaatcctgagggcaaaa	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22404414	A	A	22404414	2	1	9	1	0	0	0	0	0	0	0	1	6704	639	23	1		1	GPR125	4	22404414	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14861	22404414	168749862	5541	13692											
GPR125	166647	broad.mit.edu	37	chr4	22414868	22414868	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgatattttcatctgaataGagtatatggcacccatctga	8	7	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22414868	T	T	22414868	2	4	9	1	0	0	0	0	0	0	0	1	6704	929	33	3		3	GPR125	4	22414868	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10454	22414868	168739408	5542	13693											
GPR125	166647	broad.mit.edu	37	chr4	22414906	22414906	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttccagcctccttgtcCgttcagcaaatcgaaatccc	6	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22414906	A	A	22414906	4	1	9	1	0	0	0	0	0	1	0	0	6704	661	23	1	1858	1	GPR125	4	22414906	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	22414906	168739370	5543	13694											
GPR125	166647	broad.mit.edu	37	chr4	22422588	22422588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtttccctctggatccCgcctcccataatccgaaagt	7	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22422588	A	A	22422588	3	1	9	1	0	0	0	0	1	0	0	0	6704	652	23	1	2267	1	GPR125	4	22422588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7682	22422588	168731688	5544	13695											
GPR125	166647	broad.mit.edu	37	chr4	22422602	22422602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcccgcctcccataatcCgaaagtcctgtacgatcaga	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22422602	A	A	22422602	2	1	9	1	0	0	0	0	0	0	0	1	6704	639	23	1		1	GPR125	4	22422602	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	22422602	168731674	5545	13696											
GPR125	166647	broad.mit.edu	37	chr4	22422659	22422659	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacggtacaggtcatcccCgtgaagccagtagacttgat	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22422659	A	A	22422659	2	1	9	1	0	0	0	0	0	0	0	1	6704	639	23	1		1	GPR125	4	22422659	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	22422659	168731617	5546	13697											
GPR125	166647	broad.mit.edu	37	chr4	22422704	22422704	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcttccagagcaatattGggtgaatacttgaaaagtca	9	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22422704	T	T	22422704	2	4	9	1	0	0	0	0	0	0	0	1	6704	1335	47	2		2	GPR125	4	22422704	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	22422704	168731572	5547	13698											
GBA3	57733	broad.mit.edu	37	chr4	22729233	22729233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagatcaatttgagtcCcaacaagcaaaaaaggagtc	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22729233	A	A	22729233	1	1	9	0	1	0	0	0	0	0	0	0	6330	638	22	2		2	GBA3	4	22729233	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	306529	22729233	168425043	5548	13699											
GBA3	57733	broad.mit.edu	37	chr4	22749334	22749334	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttggaaccagcagatccCaactcagtgtctgaccagga	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22749334	A	A	22749334	2	1	9	1	0	0	0	0	0	0	0	1	6330	581	21	2		2	GBA3	4	22749334	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20101	22749334	168404942	5549	13700											
PPARGC1A	10891	broad.mit.edu	37	chr4	23831099	23831099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtaccttaacaattgcaGggtttgttctgatcctgtga	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23831099	T	T	23831099	3	4	9	1	0	0	0	0	1	0	0	0	12396	1000	35	2	1897	2	PPARGC1A	4	23831099	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1081765	23831099	167323177	5550	13701											
DHX15	1665	broad.mit.edu	37	chr4	24534409	24534409	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaactcacttttgcttttGagtggattcaaaggactgtt	8	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24534409	T	T	24534409	1	4	9	0	1	0	0	0	0	0	0	0	4541	1305	45	3		3	DHX15	4	24534409	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	703310	24534409	166619867	5551	13702											
DHX15	1665	broad.mit.edu	37	chr4	24578188	24578188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatagcatttgttgaagctCgcaactccttctccttttct	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24578188	A	A	24578188	3	1	9	1	0	0	0	0	1	0	0	0	4541	884	31	3	2254	3	DHX15	4	24578188	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43779	24578188	166576088	5552	13703											
CCDC149	91050	broad.mit.edu	37	chr4	24878201	24878201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgactggtggcgctccCggagctgattggccatgagt	15	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24878201	A	A	24878201	3	1	9	1	0	0	0	0	1	0	0	0	2809	652	23	1	1455	1	CCDC149	4	24878201	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	300013	24878201	166276075	5553	13704											
LGI2	55203	broad.mit.edu	37	chr4	25005390	25005390	+	Missense_Mutation	SNP	C	A	A													cctcatgacccgggagtcccCgatgaagcgggtaagggaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25005390	A	A	25005390	3	1	9	1	0	0	0	0	1	0	0	0	8824	652	23	1	320	1	LGI2	4	25005390	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127189	25005390	166148886	5554	13705	83	2									
LGI2	55203	broad.mit.edu	37	chr4	25005399	25005399	+	Missense_Mutation	SNP	G	T	T													ccgggagtccccgatgaagcGggtaagggaaaggtagaggg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25005399	T	T	25005399	3	4	9	1	0	0	0	0	1	0	0	0	8824	1116	39	1	329	1	LGI2	4	25005399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	25005399	166148877	5555	13706	83	2									
LGI2	55203	broad.mit.edu	37	chr4	25028529	25028529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccagcaaaagcatcatccCggatgatcgtgaatgagtta	10	9	1	3	rs138015592	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25028529	A	A	25028529	3	1	9	1	0	0	0	0	1	0	0	0	8824	652	23	1	1359	1	LGI2	4	25028529	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23130	25028529	166125747	5556	13707											
SLC34A2	10568	broad.mit.edu	37	chr4	25671462	25671462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcacaaagctcattgtcCaggtaacttagctccttcag	6	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25671462	A	A	25671462	3	1	9	1	0	0	0	0	1	0	0	0	14682	595	21	2	851	2	SLC34A2	4	25671462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	642933	25671462	165482814	5557	13708											
SLC34A2	10568	broad.mit.edu	37	chr4	25673285	25673285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccttccctctgttggacGgatggcatccaaaactggac	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25673285	T	T	25673285	2	4	9	1	0	0	0	0	0	0	0	1	14682	1103	39	1		1	SLC34A2	4	25673285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1823	25673285	165480991	5558	13709											
SLC34A2	10568	broad.mit.edu	37	chr4	25677927	25677927	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcctgatcccgctgacGgtgtttggcctctcgctggc	11	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25677927	T	T	25677927	2	4	9	1	0	0	0	0	0	0	0	1	14682	1103	39	1		1	SLC34A2	4	25677927	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4642	25677927	165476349	5559	13710											
SEL1L3	23231	broad.mit.edu	37	chr4	25836822	25836823	+	Missense_Mutation	DNP	GG	TT	TT													ctgctacccatccttacactGggtaatccatcctctggcgt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	25836823	TT	TT	25836822	3	4	9	1	0	0	0	0	1	0	0	0	14125	1348	47	2	2629	2	SEL1L3	4	25836822	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	158895	25836822	165317454	5560	13711											
RBPJ	3516	broad.mit.edu	37	chr4	26417198	26417198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaacaagagtctcaacCgtgtgcatttattgggatag	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26417198	A	A	26417198	3	1	9	1	0	0	0	0	1	0	0	0	13269	652	23	1	373	1	RBPJ	4	26417198	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	580376	26417198	164737078	5561	13712											
RBPJ	3516	broad.mit.edu	37	chr4	26432116	26432116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatttacgagtgtggtttGgggatgtagaagctgaaact	13	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26432116	T	T	26432116	3	4	9	1	0	0	0	0	1	0	0	0	13269	1348	47	2	1260	2	RBPJ	4	26432116	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14918	26432116	164722160	5562	13713											
CCKAR	886	broad.mit.edu	37	chr4	26483610	26483610	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgatgacgatgagcatgcGgatcacccttttcttggcca	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26483610	T	T	26483610	3	4	9	1	0	0	0	0	1	0	0	0	2908	1116	39	1	353	1	CCKAR	4	26483610	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51494	26483610	164670666	5563	13714											
CCKAR	886	broad.mit.edu	37	chr4	26484702	26484702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaactttacgtacactctGggtatatctatttaaatgat	5	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26484702	T	T	26484702	1	4	9	0	1	0	0	0	0	0	0	0	2908	1363	47	2		2	CCKAR	4	26484702	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1092	26484702	164669574	5564	13715											
PCDH7	5099	broad.mit.edu	37	chr4	30725714	30725714	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggttgctggcattatgacGgtgattctaatcatcttaat	10	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30725714	T	T	30725714	2	4	9	1	0	0	0	0	0	0	0	1	11610	1103	39	1		1	PCDH7	4	30725714	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4241012	30725714	160428562	5565	13716											
ARAP2	116984	broad.mit.edu	37	chr4	36093639	36093639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgcttcccagtgtactcCggtctgtaaagtacagcatt	9	10	1	1	rs140811676	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36093639	A	A	36093639	3	1	9	1	0	0	0	0	1	0	0	0	841	652	23	1	849	1	ARAP2	4	36093639	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5367925	36093639	155060637	5566	13717											
ARAP2	116984	broad.mit.edu	37	chr4	36115827	36115827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgacttcaaatgtggccCaaatatcaccttttgtagga	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36115827	A	A	36115827	3	1	9	1	0	0	0	0	1	0	0	0	841	595	21	2	1025	2	ARAP2	4	36115827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22188	36115827	155038449	5567	13718											
ARAP2	116984	broad.mit.edu	37	chr4	36134839	36134839	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggttgaataaaaactcagtGatacttaccatactgtgtaa	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36134839	A	A	36134839	1	1	9	0	1	0	0	0	0	0	0	0	841	1305	45	4		4	ARAP2	4	36134839	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19012	36134839	155019437	5568	13719											
ARAP2	116984	broad.mit.edu	37	chr4	36212252	36212252	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaagcattcttctactgttGagtattctgattcagaagca	8	7	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36212252	T	T	36212252	4	4	9	1	0	0	0	0	0	1	0	0	841	1294	45	3	3979	3	ARAP2	4	36212252	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77413	36212252	154942024	5569	13720											
PGM2	55276	broad.mit.edu	37	chr4	37841677	37841677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttctgaatgtgttcctGggtcctctaggtctattggg	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37841677	T	T	37841677	1	4	9	0	1	0	0	0	0	0	0	0	11893	1363	47	2		2	PGM2	4	37841677	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1629425	37841677	153312599	5570	13721											
PGM2	55276	broad.mit.edu	37	chr4	37846146	37846146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccaacagtgaaataccCgaatcccgaagaggggaaag	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37846146	A	A	37846146	3	1	9	1	0	0	0	0	1	0	0	0	11893	652	23	1	907	1	PGM2	4	37846146	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4469	37846146	153308130	5571	13722											
PGM2	55276	broad.mit.edu	37	chr4	37847312	37847312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgttttagctaacgaccCggatgctgatagacttgctg	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37847312	A	A	37847312	3	1	9	1	0	0	0	0	1	0	0	0	11893	652	23	1	998	1	PGM2	4	37847312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1166	37847312	153306964	5572	13723											
PTTG2	10744	broad.mit.edu	37	chr4	37962500	37962500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagtgcctctcatgatcCttgatgaggagggagagctt	15	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37962500	A	A	37962500	3	1	9	1	0	0	0	0	1	0	0	0	12929	681	24	2	447	2	PTTG2	4	37962500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115188	37962500	153191776	5573	13724											
TBC1D1	23216	broad.mit.edu	37	chr4	38016162	38016162	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagctccatccgtcaggcGgggaagatcgcccggcagga	14	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38016162	T	T	38016162	2	4	9	1	0	0	0	0	0	0	0	1	15716	1103	39	1		1	TBC1D1	4	38016162	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53662	38016162	153138114	5574	13725											
TBC1D1	23216	broad.mit.edu	37	chr4	38022226	38022226	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagggcatcagacacgtGgaccactttgggtttatctg	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38022226	T	T	38022226	2	4	9	1	0	0	0	0	0	0	0	1	15716	1335	47	2		2	TBC1D1	4	38022226	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6064	38022226	153132050	5575	13726											
TBC1D1	23216	broad.mit.edu	37	chr4	38022249	38022249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactttgggtttatctgtcGggagtcttccggaggtggcg	15	9	2	0	rs140462385		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38022249	T	T	38022249	3	4	9	1	0	0	0	0	1	0	0	0	15716	1116	39	1	1024	1	TBC1D1	4	38022249	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	38022249	153132027	5576	13727											
TBC1D1	23216	broad.mit.edu	37	chr4	38055860	38055860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatcttggtgattctggtGggactcctgtgaagacccgg	13	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38055860	T	T	38055860	3	4	9	1	0	0	0	0	1	0	0	0	15716	1348	47	2	1993	2	TBC1D1	4	38055860	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33611	38055860	153098416	5577	13728											
TBC1D1	23216	broad.mit.edu	37	chr4	38119673	38119673	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatccagatgtaccagctctCgaggttgcttcatgattacc	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38119673	A	A	38119673	4	1	9	1	0	0	0	0	0	1	0	0	15716	893	31	3	2884	3	TBC1D1	4	38119673	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63813	38119673	153034603	5578	13729											
KLF3	51274	broad.mit.edu	37	chr4	38698837	38698837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgaccgcagcttctccCgttctgaccatcttgccctc	7	17	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38698837	A	A	38698837	3	1	9	1	0	0	0	0	1	0	0	0	8418	652	23	1	1009	1	KLF3	4	38698837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	579164	38698837	152455439	5579	13730											
TLR10	81793	broad.mit.edu	37	chr4	38775533	38775533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcttttaacctagttcccCttaggtttaaagggtattca	7	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38775533	A	A	38775533	3	1	9	1	0	0	0	0	1	0	0	0	16073	681	24	2	760	2	TLR10	4	38775533	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76696	38775533	152378743	5580	13731											
TLR1	7096	broad.mit.edu	37	chr4	38798832	38798832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacacttcacttgatacttGgtctatatttttgacaaatt	4	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38798832	T	T	38798832	3	4	9	1	0	0	0	0	1	0	0	0	16072	1357	47	2	743	2	TLR1	4	38798832	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23299	38798832	152355444	5581	13732											
KLHL5	51088	broad.mit.edu	37	chr4	39114811	39114811	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggggggcacgatgctccCgcatccaacttgacttccag	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39114811	A	A	39114811	2	1	9	1	0	0	0	0	0	0	0	1	8463	639	23	1		1	KLHL5	4	39114811	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	315979	39114811	152039465	5582	13733											
WDR19	57728	broad.mit.edu	37	chr4	39219646	39219646	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaagaagaacgtgagactcGgcttttcccagcagtggatg	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39219646	C	C	39219646	3	2	9	1	0	0	0	0	1	0	0	0	17406	1116	39	4	1454	4	WDR19	4	39219646	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	104835	39219646	151934630	5583	13734											
WDR19	57728	broad.mit.edu	37	chr4	39233520	39233520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagtggagtttgcaatcCgtgtttatcggagaattgga	14	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39233520	A	A	39233520	3	1	9	1	0	0	0	0	1	0	0	0	17406	652	23	1	2156	1	WDR19	4	39233520	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13874	39233520	151920756	5584	13735											
WDR19	57728	broad.mit.edu	37	chr4	39278646	39278646	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttcctcacaggagaccCgatatatctgagatagaaga	8	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39278646	A	A	39278646	2	1	9	1	0	0	0	0	0	0	0	1	17406	639	23	1		1	WDR19	4	39278646	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45126	39278646	151875630	5585	13736											
RFC1	5981	broad.mit.edu	37	chr4	39291552	39291552	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaattcttcattgtattcCgaatccagggatgggcttgt	9	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39291552	A	A	39291552	2	1	9	1	0	0	0	0	0	0	0	1	13352	639	23	1		1	RFC1	4	39291552	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12906	39291552	151862724	5586	13737											
RFC1	5981	broad.mit.edu	37	chr4	39291565	39291565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattccgaatccagggatGggcttgtgctgtgtctagat	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39291565	T	T	39291565	3	4	9	1	0	0	0	0	1	0	0	0	13352	1348	47	2	188	2	RFC1	4	39291565	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	39291565	151862711	5587	13738											
RFC1	5981	broad.mit.edu	37	chr4	39306427	39306427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacaggaggtcaaaaagcCacatacttgaataaaagcct	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39306427	A	A	39306427	1	1	9	0	1	0	0	0	0	0	0	0	13352	609	21	2		2	RFC1	4	39306427	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14862	39306427	151847849	5588	13739											
RFC1	5981	broad.mit.edu	37	chr4	39306549	39306549	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtagctgtatcccaactcCtaatcaaaatattggaaacc	5	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39306549	A	A	39306549	5	1	9	1	0	0	0	0	0	0	1	0	13352	695	24	2	1492	2	RFC1	4	39306549	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	122	39306549	151847727	5589	13740											
RFC1	5981	broad.mit.edu	37	chr4	39306605	39306605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattaactccaccaccccCgccaagaaaggccagttaag	6	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39306605	A	A	39306605	1	1	9	0	1	0	0	0	0	0	0	0	13352	667	23	1		1	RFC1	4	39306605	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	39306605	151847671	5590	13741											
RFC1	5981	broad.mit.edu	37	chr4	39314405	39314405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgtccactatcacgaccCatgacaagataatttgtttt	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39314405	A	A	39314405	3	1	9	1	0	0	0	0	1	0	0	0	13352	594	21	2	2153	2	RFC1	4	39314405	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7800	39314405	151839871	5591	13742											
LIAS	11019	broad.mit.edu	37	chr4	39462435	39462435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagatatttttgcagccCagtcagaccgttaagctcct	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39462435	A	A	39462435	3	1	9	1	0	0	0	0	1	0	0	0	8850	594	21	2	77	2	LIAS	4	39462435	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148030	39462435	151691841	5592	13743											
LIAS	11019	broad.mit.edu	37	chr4	39471656	39471656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaggttcgtgatcctcGggccaattttgatcagtccc	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39471656	T	T	39471656	3	4	9	1	0	0	0	0	1	0	0	0	8850	1116	39	1	785	1	LIAS	4	39471656	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9221	39471656	151682620	5593	13744											
UGDH	7358	broad.mit.edu	37	chr4	39507210	39507210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttaacacaatctcaaaaGggttgaaatatttttaaaaa	6	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39507210	T	T	39507210	1	4	9	0	1	0	0	0	0	0	0	0	17066	1015	35	2		2	UGDH	4	39507210	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35554	39507210	151647066	5594	13745											
N4BP2	55728	broad.mit.edu	37	chr4	40104402	40104403	+	Missense_Mutation	DNP	CG	AT	AT													gtggggatcagaaatctactCgggtctctgatgtgtttcta					rs142821069		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	40104403	AT	AT	40104402	3	1	9	1	0	0	0	0	1	0	0	0	10204	875	31	3	943	3	N4BP2	4	40104402	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	597192	40104402	151049874	5595	13746											
CHRNA9	55584	broad.mit.edu	37	chr4	40351273	40351273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcgtcaacctcctcatccCatgcgtcctcatatcttttc	3	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40351273	A	A	40351273	3	1	9	1	0	0	0	0	1	0	0	0	3420	594	21	2	754	2	CHRNA9	4	40351273	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	246871	40351273	150803003	5596	13747											
CHRNA9	55584	broad.mit.edu	37	chr4	40356179	40356179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgaaagctgcctcagccCgcaccacagtagagagcggg	15	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40356179	A	A	40356179	3	1	9	1	0	0	0	0	1	0	0	0	3420	652	23	1	1100	1	CHRNA9	4	40356179	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4906	40356179	150798097	5597	13748											
RBM47	54502	broad.mit.edu	37	chr4	40438593	40438593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaccagcagaatatccccCgaggtaggaacccctaggcc	10	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40438593	A	A	40438593	3	1	9	1	0	0	0	0	1	0	0	0	13249	652	23	1	598	1	RBM47	4	40438593	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82414	40438593	150715683	5598	13749											
APBB2	323	broad.mit.edu	37	chr4	40818034	40818034	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaactggatggaaggtcGgatggcggagttcattttct	14	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40818034	T	T	40818034	1	4	9	0	1	0	0	0	0	0	0	0	763	1131	39	1		1	APBB2	4	40818034	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	379441	40818034	150336242	5599	13750											
APBB2	323	broad.mit.edu	37	chr4	40829223	40829223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgctttggcattcttcCgttcagccataatctaaggg	9	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40829223	A	A	40829223	3	1	9	1	0	0	0	0	1	0	0	0	763	652	23	1	641	1	APBB2	4	40829223	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11189	40829223	150325053	5600	13751											
APBB2	323	broad.mit.edu	37	chr4	40895372	40895372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcaacactacttttaccGggggcgaggtcctcttctgc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40895372	T	T	40895372	2	4	9	1	0	0	0	0	0	0	0	1	763	1103	39	1		1	APBB2	4	40895372	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66149	40895372	150258904	5601	13752											
APBB2	323	broad.mit.edu	37	chr4	41015792	41015792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtcttcagggctggactGgggtctgtttggtttctgca	15	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41015792	T	T	41015792	3	4	9	1	0	0	0	0	1	0	0	0	763	1357	47	2	1688	2	APBB2	4	41015792	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	120420	41015792	150138484	5602	13753											
APBB2	323	broad.mit.edu	37	chr4	41015877	41015877	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggctgggatttctcttcCgcagtcccatggtgattgcc	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41015877	A	A	41015877	2	1	9	1	0	0	0	0	0	0	0	1	763	639	23	1		1	APBB2	4	41015877	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85	41015877	150138399	5603	13754											
LIMCH1	22998	broad.mit.edu	37	chr4	41601005	41601005	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatctcaactttttgacccGagtgacctccaggatacatc	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41601005	T	T	41601005	2	4	9	1	0	0	0	0	0	0	0	1	8869	1045	37	3		3	LIMCH1	4	41601005	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	585128	41601005	149553271	5604	13755											
LIMCH1	22998	broad.mit.edu	37	chr4	41621150	41621150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaatgcatgcttaacattGggaactttctgctagcctaa	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41621150	T	T	41621150	1	4	9	0	1	0	0	0	0	0	0	0	8869	1363	47	2		2	LIMCH1	4	41621150	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20145	41621150	149533126	5605	13756											
LIMCH1	22998	broad.mit.edu	37	chr4	41621181	41621181	+	Intron	SNP	C	A	A													gctagcctaacacactttctCagtacccatcctctcttccc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41621181	A	A	41621181	1	1	9	0	1	0	0	0	0	0	0	0	8869	841	29	3		3	LIMCH1	4	41621181	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	41621181	149533095	5606	13757	84	2									
LIMCH1	22998	broad.mit.edu	37	chr4	41621188	41621188	+	Intron	SNP	C	A	A													taacacactttctcagtaccCatcctctcttccctagggag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41621188	A	A	41621188	1	1	9	0	1	0	0	0	0	0	0	0	8869	609	21	2		2	LIMCH1	4	41621188	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	41621188	149533088	5607	13758	84	2									
LIMCH1	22998	broad.mit.edu	37	chr4	41648809	41648809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcatgtcagcaggcagtGggtctccaagcaaaactgtc	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41648809	T	T	41648809	3	4	9	1	0	0	0	0	1	0	0	0	8869	1348	47	2	1638	2	LIMCH1	4	41648809	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27621	41648809	149505467	5608	13759											
LIMCH1	22998	broad.mit.edu	37	chr4	41699182	41699182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttaatcacaggtgccGggcagcctacaacattgtga	10	9	1	1	rs142431467		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41699182	T	T	41699182	3	4	9	1	0	0	0	0	1	0	0	0	8869	1116	39	1	3366	1	LIMCH1	4	41699182	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50373	41699182	149455094	5609	13760											
PHOX2B	8929	broad.mit.edu	37	chr4	41749412	41749412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagggccagctcctccCgagtgtagatgtcggggtag	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41749412	A	A	41749412	3	1	9	1	0	0	0	0	1	0	0	0	11954	652	23	1	569	1	PHOX2B	4	41749412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50230	41749412	149404864	5610	13761											
TMEM33	55161	broad.mit.edu	37	chr4	41940648	41940648	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaccaataaactggacacGgcaatgtggctttctcgctt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41940648	T	T	41940648	2	4	9	1	0	0	0	0	0	0	0	1	16279	1103	39	1		1	TMEM33	4	41940648	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	191236	41940648	149213628	5611	13762											
TMEM33	55161	broad.mit.edu	37	chr4	41956016	41956016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaatatctatggagtaCaataaaatgaggtaagcctg	9	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41956016	A	A	41956016	1	1	9	0	1	0	0	0	0	0	0	0	16279	493	17	3		3	TMEM33	4	41956016	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15368	41956016	149198260	5612	13763											
DCAF4L1	285429	broad.mit.edu	37	chr4	41983939	41983939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacgtcaccagttactccCgtttagccaacgagctgcgt	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41983939	A	A	41983939	3	1	9	1	0	0	0	0	1	0	0	0	4304	652	23	1	132	1	DCAF4L1	4	41983939	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27923	41983939	149170337	5613	13764											
DCAF4L1	285429	broad.mit.edu	37	chr4	41984454	41984454	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgaccagcgtggcgacGggacaccagcagtcatttga	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41984454	T	T	41984454	2	4	9	1	0	0	0	0	0	0	0	1	4304	1103	39	1		1	DCAF4L1	4	41984454	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	515	41984454	149169822	5614	13765											
SLC30A9	10463	broad.mit.edu	37	chr4	42062222	42062222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagggtttactagcattGggcatcagtaagtctgttca	10	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42062222	T	T	42062222	3	4	9	1	0	0	0	0	1	0	0	0	14676	1339	47	2	893	2	SLC30A9	4	42062222	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77768	42062222	149092054	5615	13766											
BEND4	389206	broad.mit.edu	37	chr4	42127563	42127563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaagatacttaagagaatTccaaatggaacattcacctt	5	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42127563	A	A	42127563	1	1	9	0	1	0	0	0	0	0	0	0	1405	1798	62	5		5	BEND4	4	42127563	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	65341	42127563	149026713	5616	13767											
SHISA3	152573	broad.mit.edu	37	chr4	42403166	42403166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaatccgcttctcactcCgcagctatcagacagagacc	7	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42403166	A	A	42403166	3	1	9	1	0	0	0	0	1	0	0	0	14394	652	23	1	421	1	SHISA3	4	42403166	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	275603	42403166	148751110	5617	13768											
ATP8A1	10396	broad.mit.edu	37	chr4	42588353	42588353	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgtttttataaagacGgattttacatacccatgtcc	6	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42588353	T	T	42588353	1	4	9	0	1	0	0	0	0	0	0	0	1196	1131	39	1		1	ATP8A1	4	42588353	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	185187	42588353	148565923	5618	13769											
GRXCR1	389207	broad.mit.edu	37	chr4	42964973	42964973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgccttcgtgtggtccGgacaacctttgaaagatgtg	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42964973	T	T	42964973	3	4	9	1	0	0	0	0	1	0	0	0	6878	1116	39	1	455	1	GRXCR1	4	42964973	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	376620	42964973	148189303	5619	13770											
GRXCR1	389207	broad.mit.edu	37	chr4	42965068	42965068	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccctgaatggtgaatatGgaaaagagttagacgaacga	12	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42965068	T	T	42965068	4	4	9	1	0	0	0	0	0	1	0	0	6878	1349	47	2	550	2	GRXCR1	4	42965068	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95	42965068	148189208	5620	13771											
GRXCR1	389207	broad.mit.edu	37	chr4	42965120	42965120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaagctccttccctccCtgttgtgttcattgatggcc	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42965120	A	A	42965120	3	1	9	1	0	0	0	0	1	0	0	0	6878	681	24	2	602	2	GRXCR1	4	42965120	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	42965120	148189156	5621	13772											
GRXCR1	389207	broad.mit.edu	37	chr4	42965149	42965149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgatggccattaccttGgggtaagtaagctgcccagg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42965149	T	T	42965149	3	4	9	1	0	0	0	0	1	0	0	0	6878	1348	47	2	631	2	GRXCR1	4	42965149	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29	42965149	148189127	5622	13773											
GUF1	60558	broad.mit.edu	37	chr4	44687991	44687991	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagatttctgctaaacttGgaacaaatgttgagagtgtt	9	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44687991	T	T	44687991	4	4	9	1	0	0	0	0	0	1	0	0	6964	1349	47	2	711	2	GUF1	4	44687991	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1722842	44687991	146466285	5623	13774											
GUF1	60558	broad.mit.edu	37	chr4	44688624	44688624	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgtagcattatttgacGgagtggtttccaaaggagat	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44688624	T	T	44688624	4	4	9	1	0	0	0	0	0	1	0	0	6964	1117	39	1	862	1	GUF1	4	44688624	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	633	44688624	146465652	5624	13775											
GUF1	60558	broad.mit.edu	37	chr4	44690130	44690130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagtggagcccttgcctGggtttaaatcagcgaaacca	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44690130	T	T	44690130	3	4	9	1	0	0	0	0	1	0	0	0	6964	1348	47	2	1079	2	GUF1	4	44690130	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1506	44690130	146464146	5625	13776											
GNPDA2	132789	broad.mit.edu	37	chr4	44719214	44719214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaaatctgcagcattccCgtcaaggatatgtgcattat	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44719214	A	A	44719214	3	1	9	1	0	0	0	0	1	0	0	0	6607	652	23	1	521	1	GNPDA2	4	44719214	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29084	44719214	146435062	5626	13777											
GABRG1	2565	broad.mit.edu	37	chr4	46099287	46099287	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatttgtgtgatatctcCttcatgaatttttggggcca	9	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46099287	A	A	46099287	4	1	9	1	0	0	0	0	0	1	0	0	6231	690	24	2	1245	2	GABRG1	4	46099287	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1380073	46099287	145054989	5627	13778											
GABRG1	2565	broad.mit.edu	37	chr4	46099327	46099327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacccaggttttgttcacCgttaaatcctcatcatcttc	5	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46099327	A	A	46099327	2	1	9	1	0	0	0	0	0	0	0	1	6231	639	23	1		1	GABRG1	4	46099327	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	46099327	145054949	5628	13779											
GABRG1	2565	broad.mit.edu	37	chr4	46099417	46099417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggttcaatcaaatcatGtataaaagtatagtttaagt	7	3	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46099417	A	A	46099417	1	1	9	0	1	0	0	0	0	0	0	0	6231	1392	48	4		4	GABRG1	4	46099417	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	90	46099417	145054859	5629	13780											
GABRA2	2555	broad.mit.edu	37	chr4	46252493	46252493	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttctggcttcttgttGggttctggcgtggttgcact	13	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46252493	T	T	46252493	2	4	9	1	0	0	0	0	0	0	0	1	6221	1335	47	2		2	GABRA2	4	46252493	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	153076	46252493	144901783	5630	13781											
GABRA2	2555	broad.mit.edu	37	chr4	46252526	46252526	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcactcttggagatggtGgagagaactggatcttttga	14	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46252526	T	T	46252526	2	4	9	1	0	0	0	0	0	0	0	1	6221	1335	47	2		2	GABRA2	4	46252526	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33	46252526	144901750	5631	13782											
GABRA4	2557	broad.mit.edu	37	chr4	46930315	46930315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaaccatgttaaatgccCcaaatgtgactggaaagaga	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46930315	A	A	46930315	3	1	9	1	0	0	0	0	1	0	0	0	6223	623	22	2	76	2	GABRA4	4	46930315	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	677789	46930315	144223961	5632	13783											
ATP10D	57205	broad.mit.edu	37	chr4	47548636	47548636	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagtgtgctttttatccCacagccaggaggttggagtc	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47548636	A	A	47548636	1	1	9	0	1	0	0	0	0	0	0	0	1122	609	21	2		2	ATP10D	4	47548636	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	618321	47548636	143605640	5633	13784											
ATP10D	57205	broad.mit.edu	37	chr4	47584084	47584084	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgaaagcaagagtttggtGagtggttttcttgcctctga	12	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47584084	T	T	47584084	1	4	9	0	1	0	0	0	0	0	0	0	1122	1305	45	3		3	ATP10D	4	47584084	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35448	47584084	143570192	5634	13785											
CORIN	10699	broad.mit.edu	37	chr4	47676433	47676433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttattcagactgttgttcGggtcacagagagagctacca	11	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47676433	T	T	47676433	3	4	9	1	0	0	0	0	1	0	0	0	3784	1116	39	1	1846	1	CORIN	4	47676433	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	92349	47676433	143477843	5635	13786											
CORIN	10699	broad.mit.edu	37	chr4	47708695	47708695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagccttcagtccgttgcGgaggagcgagctggacgcca	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47708695	T	T	47708695	1	4	9	0	1	0	0	0	0	0	0	0	3784	1131	39	1		1	CORIN	4	47708695	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32262	47708695	143445581	5636	13787											
CORIN	10699	broad.mit.edu	37	chr4	47839877	47839877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccatcacacctggctgcGgtaggacagcgaatcatcga	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47839877	T	T	47839877	1	4	9	0	1	0	0	0	0	0	0	0	3784	1131	39	1		1	CORIN	4	47839877	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	131182	47839877	143314399	5637	13788											
CORIN	10699	broad.mit.edu	37	chr4	47839918	47839918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaccggctttggggaccCggctctgcggcagcgctctt	13	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47839918	A	A	47839918	3	1	9	1	0	0	0	0	1	0	0	0	3784	652	23	1	3167	1	CORIN	4	47839918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	47839918	143314358	5638	13789											
NFXL1	152518	broad.mit.edu	37	chr4	47864826	47864826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccaagagaaacaatgccCaaggaatacaatttaaaagg	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47864826	A	A	47864826	1	1	9	0	1	0	0	0	0	0	0	0	10483	609	21	2		2	NFXL1	4	47864826	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24908	47864826	143289450	5639	13790											
CNGA1	1259	broad.mit.edu	37	chr4	47939516	47939516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattaatatcagggtagaccCatgtatcatttccaaatcca	5	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47939516	A	A	47939516	3	1	9	1	0	0	0	0	1	0	0	0	3628	595	21	2	1081	2	CNGA1	4	47939516	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74690	47939516	143214760	5640	13791											
CNGA1	1259	broad.mit.edu	37	chr4	47945129	47945129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttctactttgtattatGgaaaatcatccctgcatcta	4	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47945129	T	T	47945129	1	4	9	0	1	0	0	0	0	0	0	0	3628	1363	47	2		2	CNGA1	4	47945129	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5613	47945129	143209147	5641	13792											
NIPAL1	152519	broad.mit.edu	37	chr4	48037616	48037616	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcataactgtgatctcCttggtgctgattttgattgt	10	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48037616	A	A	48037616	2	1	9	1	0	0	0	0	0	0	0	1	10519	668	24	2		2	NIPAL1	4	48037616	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92487	48037616	143116660	5642	13793											
TXK	7294	broad.mit.edu	37	chr4	48069685	48069685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaatctctgtgacagccCgcagcagctcggcaaatgta	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48069685	A	A	48069685	3	1	9	1	0	0	0	0	1	0	0	0	16912	652	23	1	34	1	TXK	4	48069685	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32069	48069685	143084591	5643	13794											
TEC	7006	broad.mit.edu	37	chr4	48152960	48152960	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaccaccttctttatcCtaaaatccaagttcagaaaa	2	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48152960	A	A	48152960	5	1	9	1	0	0	0	0	0	0	1	0	15864	695	24	2	1139	2	TEC	4	48152960	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	83275	48152960	143001316	5644	13795											
TEC	7006	broad.mit.edu	37	chr4	48169845	48169845	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatcattcttttctaaaatGagatactcttggcctctctc	4	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48169845	T	T	48169845	2	4	9	1	0	0	0	0	0	0	0	1	15864	1277	45	3		3	TEC	4	48169845	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16885	48169845	142984431	5645	13796											
SLAIN2	57606	broad.mit.edu	37	chr4	48381850	48381850	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgtacagattctagccCggatgcaggaagaaagtaag	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48381850	A	A	48381850	2	1	9	1	0	0	0	0	0	0	0	1	14479	643	23	1		1	SLAIN2	4	48381850	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	212005	48381850	142772426	5646	13797											
SLC10A4	201780	broad.mit.edu	37	chr4	48487020	48487020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgtggatctacagctGggcttggatcaacaccccta	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48487020	T	T	48487020	3	4	9	1	0	0	0	0	1	0	0	0	14489	1357	47	2	668	2	SLC10A4	4	48487020	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	105170	48487020	142667256	5647	13798											
ZAR1	326340	broad.mit.edu	37	chr4	48494755	48494755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataattcaggtgttttgttGgttaaattgacatatcctgt	9	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48494755	T	T	48494755	1	4	9	0	1	0	0	0	0	0	0	0	17642	1363	47	2		2	ZAR1	4	48494755	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7735	48494755	142659521	5648	13799											
FRYL	285527	broad.mit.edu	37	chr4	48514612	48514612	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatcatcatatgccacGggctgaaaggcggctatgat	10	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48514612	T	T	48514612	2	4	9	1	0	0	0	0	0	0	0	1	6124	1103	39	1		1	FRYL	4	48514612	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19857	48514612	142639664	5649	13800											
FRYL	285527	broad.mit.edu	37	chr4	48559638	48559638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggagaggttttaagtcCaccagctcgatgttgttcat	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48559638	A	A	48559638	2	1	9	1	0	0	0	0	0	0	0	1	6124	581	21	2		2	FRYL	4	48559638	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45026	48559638	142594638	5650	13801											
OCIAD1	54940	broad.mit.edu	37	chr4	48834699	48834699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttccaagaccaattcccCgtaactatctattaagtatt	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48834699	A	A	48834699	3	1	9	1	0	0	0	0	1	0	0	0	10912	666	23	1	79	1	OCIAD1	4	48834699	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	275061	48834699	142319577	5651	13802											
CWH43	80157	broad.mit.edu	37	chr4	48993428	48993428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcacggagttccaatcCatacttgccagaaatgctta	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48993428	A	A	48993428	1	1	9	0	1	0	0	0	0	0	0	0	4106	609	21	2		2	CWH43	4	48993428	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	158729	48993428	142160848	5652	13803											
CWH43	80157	broad.mit.edu	37	chr4	49034540	49034540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccagtgcatggtagaatGggactgacaatgatgcccat	12	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49034540	T	T	49034540	1	4	9	0	1	0	0	0	0	0	0	0	4106	1363	47	2		2	CWH43	4	49034540	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41112	49034540	142119736	5653	13804											
CWH43	80157	broad.mit.edu	37	chr4	49040030	49040030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttacaaatacaataaagGgtcatatttttacatttttt	4	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49040030	T	T	49040030	1	4	9	0	1	0	0	0	0	0	0	0	4106	1247	43	2		2	CWH43	4	49040030	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5490	49040030	142114246	5654	13805											
DCUN1D4	23142	broad.mit.edu	37	chr4	52744054	52744054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatcatctaagactgatcCttatgacaataaggagtacc	7	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52744054	A	A	52744054	1	1	9	0	1	0	0	0	0	0	0	0	4349	696	24	2		2	DCUN1D4	4	52744054	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3704024	52744054	138410222	5655	13806											
LRRC66	339977	broad.mit.edu	37	chr4	52861875	52861875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcgcagatgggtctctGggtgtggtgtgtgccccgca	17	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52861875	T	T	52861875	3	4	9	1	0	0	0	0	1	0	0	0	9105	1348	47	2	1333	2	LRRC66	4	52861875	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	117821	52861875	138292401	5656	13807											
SGCB	6443	broad.mit.edu	37	chr4	52894999	52894999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagatattttgagtcctcGggtcaaaaaactgcatgccg	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52894999	T	T	52894999	3	4	9	1	0	0	0	0	1	0	0	0	14313	1116	39	1	450	1	SGCB	4	52894999	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33124	52894999	138259277	5657	13808											
SPATA18	132671	broad.mit.edu	37	chr4	52928470	52928470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctaatttgaactcaaccCggagtcaatgcaaccaggtt	7	11	3	1	rs143076152		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52928470	A	A	52928470	2	1	9	1	0	0	0	0	0	0	0	1	15119	643	23	1		1	SPATA18	4	52928470	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33471	52928470	138225806	5658	13809											
SCFD2	152579	broad.mit.edu	37	chr4	54231232	54231232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaagtcccagcaatgtGgggaatggtaatgaagaact	12	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54231232	T	T	54231232	1	4	9	0	1	0	0	0	0	0	0	0	14002	1363	47	2		2	SCFD2	4	54231232	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1302762	54231232	136923044	5659	13810											
PDGFRA	5156	broad.mit.edu	37	chr4	54257352	54257352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggcttgtctaccgtccCacttttactccccaaataaa	4	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54257352	A	A	54257352	1	1	9	0	1	0	0	0	0	0	0	0	11755	609	21	2		2	PDGFRA	4	54257352	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26120	54257352	136896924	5660	13811											
PDGFRA	5156	broad.mit.edu	37	chr4	54265905	54265905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttaaggtacagcaGggaagaactggaaactcaga	10	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54265905	T	T	54265905	3	4	9	1	0	0	0	0	1	0	0	0	11755	991	35	2		2	PDGFRA	4	54265905	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8553	54265905	136888371	5661	13812											
PDGFRA	5156	broad.mit.edu	37	chr4	54342912	54342912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacagggatgttgtgtttGgacttaccgtggtaattcca	11	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54342912	T	T	54342912	1	4	9	0	1	0	0	0	0	0	0	0	11755	1363	47	2		2	PDGFRA	4	54342912	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	77007	54342912	136811364	5662	13813											
PDGFRA	5156	broad.mit.edu	37	chr4	54348065	54348065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccactgtcagtttccatcCactgcattcagcaccaggag	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54348065	A	A	54348065	1	1	9	0	1	0	0	0	0	0	0	0	11755	609	21	2		2	PDGFRA	4	54348065	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5153	54348065	136806211	5663	13814											
PDGFRA	5156	broad.mit.edu	37	chr4	55127363	55127363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttctctgagatgctttGgggagagtgaagtgagctgg	15	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55127363	T	T	55127363	3	4	9	1	0	0	0	0	1	0	0	0	11755	1348	47	2	157	2	PDGFRA	4	55127363	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	779298	55127363	136026913	5664	13815											
PDGFRA	5156	broad.mit.edu	37	chr4	55144512	55144512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcatacccatctcctaacGgcttttgtccccataggccc	5	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55144512	T	T	55144512	1	4	9	0	1	0	0	0	0	0	0	0	11755	1131	39	1		1	PDGFRA	4	55144512	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17149	55144512	136009764	5665	13816											
KIT	3815	broad.mit.edu	37	chr4	55604659	55604659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggtagaccattctgtgcGgatcaattctgtcggcagca	12	10	3	1	rs139694927		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55604659	T	T	55604659	3	4	9	1	0	0	0	0	1	0	0	0	8400	1116	39	1	2949	1	KIT	4	55604659	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	460147	55604659	135549617	5666	13817											
KDR	3791	broad.mit.edu	37	chr4	55955875	55955875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctaaggaaaatatttccCacagcaaaacaccaaaagac	4	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55955875	A	A	55955875	3	1	9	1	0	0	0	0	1	0	0	0	8209	595	21	2	811	2	KDR	4	55955875	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	351216	55955875	135198401	5667	13818											
KDR	3791	broad.mit.edu	37	chr4	55972048	55972048	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcccgactttgttgacCgcttcacatttgtacaaagc	6	14	2	1	rs138803814	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55972048	A	A	55972048	2	1	9	1	0	0	0	0	0	0	0	1	8209	639	23	1		1	KDR	4	55972048	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16173	55972048	135182228	5668	13819											
KDR	3791	broad.mit.edu	37	chr4	55972114	55972114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtacttacagtctgtgcGgggaaaaaacaaatcccagg	12	8	1	0	rs149305690	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55972114	T	T	55972114	1	4	9	0	1	0	0	0	0	0	0	0	8209	1131	39	1		1	KDR	4	55972114	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	66	55972114	135182162	5669	13820											
KDR	3791	broad.mit.edu	37	chr4	55976688	55976688	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatcgtcagtacatgcccCgctttaattgtgtgattgga	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55976688	A	A	55976688	2	1	9	1	0	0	0	0	0	0	0	1	8209	639	23	1		1	KDR	4	55976688	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4574	55976688	135177588	5670	13821											
CLOCK	9575	broad.mit.edu	37	chr4	56310894	56310894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttctatcatgcgtgtcCgttgttccaattggtctttc	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56310894	A	A	56310894	3	1	9	1	0	0	0	0	1	0	0	0	3581	652	23	1	962	1	CLOCK	4	56310894	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	334206	56310894	134843382	5671	13822											
CEP135	9662	broad.mit.edu	37	chr4	56847447	56847447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccaaaccacagcacccCataatattgttagtcttatg	4	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56847447	A	A	56847447	3	1	9	1	0	0	0	0	1	0	0	0	3277	594	21	2	1727	2	CEP135	4	56847447	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	536553	56847447	134306829	5672	13823											
CEP135	9662	broad.mit.edu	37	chr4	56886804	56886804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacctgactctacaaaacGgaacgtttatttcttgattt	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56886804	T	T	56886804	1	4	9	0	1	0	0	0	0	0	0	0	3277	1131	39	1		1	CEP135	4	56886804	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39357	56886804	134267472	5673	13824											
CEP135	9662	broad.mit.edu	37	chr4	56890672	56890672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatctttactaacagagaacGagcaatccaagagatgcgtc	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56890672	T	T	56890672	3	4	9	1	0	0	0	0	1	0	0	0	3277	1058	37	3	3420	3	CEP135	4	56890672	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3868	56890672	134263604	5674	13825											
KIAA1211	57482	broad.mit.edu	37	chr4	57193876	57193876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaagaggttttccacccCggatgctgcccccgtgtcaa	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57193876	A	A	57193876	3	1	9	1	0	0	0	0	1	0	0	0	8285	652	23	1	3638	1	KIAA1211	4	57193876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	303204	57193876	133960400	5675	13826											
AASDH	132949	broad.mit.edu	37	chr4	57209025	57209025	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctccaaagtgagtaaagcaGagtaaattcccatctacaca	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57209025	T	T	57209025	2	4	9	1	0	0	0	0	0	0	0	1	22	929	33	3		3	AASDH	4	57209025	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15149	57209025	133945251	5676	13827											
AASDH	132949	broad.mit.edu	37	chr4	57248749	57248749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgataggtacataagcagccGggacttggagaattctaaag	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57248749	T	T	57248749	3	4	9	1	0	0	0	0	1	0	0	0	22	1116	39	1	3103	1	AASDH	4	57248749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39724	57248749	133905527	5677	13828											
PPAT	5471	broad.mit.edu	37	chr4	57265549	57265549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtttttacacagcacctcCacatatggaagtccacactg	7	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57265549	A	A	57265549	2	1	9	1	0	0	0	0	0	0	0	1	12398	581	21	2		2	PPAT	4	57265549	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16800	57265549	133888727	5678	13829											
PPAT	5471	broad.mit.edu	37	chr4	57267555	57267555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagatacaaaaagccactGggtttccttcagaccttgat	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57267555	T	T	57267555	3	4	9	1	0	0	0	0	1	0	0	0	12398	1348	47	2	746	2	PPAT	4	57267555	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2006	57267555	133886721	5679	13830											
PPAT	5471	broad.mit.edu	37	chr4	57267592	57267592	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatataatatcaagagtttGgacattgtgtctggatattt	9	3	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57267592	T	T	57267592	3	4	9	1	0	0	0	0	1	0	0	0	12398	1357	47	2	783	2	PPAT	4	57267592	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	57267592	133886684	5680	13831											
PPAT	5471	broad.mit.edu	37	chr4	57267740	57267740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcacacagagtaccttcCcttagagaaacaattgattc	6	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57267740	A	A	57267740	1	1	9	0	1	0	0	0	0	0	0	0	12398	638	22	2		2	PPAT	4	57267740	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	148	57267740	133886536	5681	13832											
SRP72	6731	broad.mit.edu	37	chr4	57350949	57350949	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttacagtcccaaagtccCgagcatctcttacctgtgtt	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57350949	A	A	57350949	2	1	9	1	0	0	0	0	0	0	0	1	15275	639	23	1		1	SRP72	4	57350949	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	83209	57350949	133803327	5682	13833											
SRP72	6731	broad.mit.edu	37	chr4	57366726	57366726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcctaagaattatgaccCaaaagttaccccagatccag	6	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57366726	A	A	57366726	3	1	9	1	0	0	0	0	1	0	0	0	15275	594	21	2	1773	2	SRP72	4	57366726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15777	57366726	133787550	5683	13834											
HOPX	84525	broad.mit.edu	37	chr4	57514950	57514950	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgccactttgccaggcgcTgcttaaaccatttctggaag	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57514950	A	A	57514950	3	1	9	1	0	0	0	0	1	0	0	0	7352	1580	55	5	67	5	HOPX	4	57514950	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	148224	57514950	133639326	5684	13835											
REST	5978	broad.mit.edu	37	chr4	57797361	57797361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggagcctgttcagatGgagttgtctcctcccatggg	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57797361	T	T	57797361	3	4	9	1	0	0	0	0	1	0	0	0	13342	1348	47	2	2347	2	REST	4	57797361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	282411	57797361	133356915	5685	13836											
REST	5978	broad.mit.edu	37	chr4	57797533	57797533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcacggaaggagcaagtcCttattgaagttggcttagtg	15	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57797533	A	A	57797533	3	1	9	1	0	0	0	0	1	0	0	0	13342	681	24	2	2519	2	REST	4	57797533	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	172	57797533	133356743	5686	13837											
REST	5978	broad.mit.edu	37	chr4	57797662	57797662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagaggcatcaggagacCaaaaattactcaacacaggt	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57797662	A	A	57797662	3	1	9	1	0	0	0	0	1	0	0	0	13342	595	21	2	2648	2	REST	4	57797662	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129	57797662	133356614	5687	13838											
REST	5978	broad.mit.edu	37	chr4	57797871	57797871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtttgtgaaatgaaaatGgacactgatcagaacacaag	9	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57797871	T	T	57797871	3	4	9	1	0	0	0	0	1	0	0	0	13342	1348	47	2	2857	2	REST	4	57797871	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	209	57797871	133356405	5688	13839											
C4orf14	84273	broad.mit.edu	37	chr4	57829597	57829597	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcaatacagttaatatctGgagtgaacaaggtcggtctc	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57829597	C	C	57829597	1	2	9	0	1	0	0	0	0	0	0	0	2274	1363	47	4		4	C4orf14	4	57829597	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	31726	57829597	133324679	5689	13840											
C4orf14	84273	broad.mit.edu	37	chr4	57830594	57830594	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggaaaacttgatgtcGgccactgcttcagatgcccc	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57830594	T	T	57830594	2	4	9	1	0	0	0	0	0	0	0	1	2274	1103	39	1		1	C4orf14	4	57830594	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	997	57830594	133323682	5690	13841											
C4orf14	84273	broad.mit.edu	37	chr4	57842863	57842863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcggattcggattctcccCgtcctgtggctcgtccttga	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57842863	A	A	57842863	3	1	9	1	0	0	0	0	1	0	0	0	2274	652	23	1	1235	1	C4orf14	4	57842863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12269	57842863	133311413	5691	13842											
POLR2B	5431	broad.mit.edu	37	chr4	57861528	57861528	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtcttgagaattcttccCgacccaccagtactatatgg	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57861528	A	A	57861528	2	1	9	1	0	0	0	0	0	0	0	1	12310	644	23	1		1	POLR2B	4	57861528	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18665	57861528	133292748	5692	13843											
POLR2B	5431	broad.mit.edu	37	chr4	57876984	57876984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggatctcaaccatctcCaattctggaatttttagaag	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57876984	A	A	57876984	3	1	9	1	0	0	0	0	1	0	0	0	12310	594	21	2	1665	2	POLR2B	4	57876984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15456	57876984	133277292	5693	13844											
POLR2B	5431	broad.mit.edu	37	chr4	57883389	57883389	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtgcatctattattccCtttcctgatcataaccaggt	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57883389	A	A	57883389	2	1	9	1	0	0	0	0	0	0	0	1	12310	668	24	2		2	POLR2B	4	57883389	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6405	57883389	133270887	5694	13845											
LPHN3	23284	broad.mit.edu	37	chr4	62449336	62449336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtttgatatgaattttGgaaactttctgaggttctga	10	3	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62449336	T	T	62449336	1	4	9	0	1	0	0	0	0	0	0	0	9004	1363	47	2		2	LPHN3	4	62449336	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4565947	62449336	128704940	5695	13846											
LPHN3	23284	broad.mit.edu	37	chr4	62812687	62812687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtccttatttatccacGgagaatgccagtatgaagtt	10	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62812687	T	T	62812687	2	4	9	1	0	0	0	0	0	0	0	1	9004	1103	39	1		1	LPHN3	4	62812687	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	363351	62812687	128341589	5696	13847											
LPHN3	23284	broad.mit.edu	37	chr4	62845292	62845292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccagcacagtgatgcGgtccatgacctccttctgga	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62845292	T	T	62845292	2	4	9	1	0	0	0	0	0	0	0	1	9004	1103	39	1		1	LPHN3	4	62845292	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32605	62845292	128308984	5697	13848											
TECRL	253017	broad.mit.edu	37	chr4	65170857	65170857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttggtcctttagtatacGgttagttaagaagaaaccct	10	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65170857	T	T	65170857	1	4	9	0	1	0	0	0	0	0	0	0	15868	1131	39	1		1	TECRL	4	65170857	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2325565	65170857	125983419	5698	13849											
EPHA5	2044	broad.mit.edu	37	chr4	66468021	66468021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttcaccaatctcttccCactgtacaatataaaataga	2	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66468021	A	A	66468021	3	1	9	1	0	0	0	0	1	0	0	0	5212	608	21	2	2929	2	EPHA5	4	66468021	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1297164	66468021	124686255	5699	13850											
CENPC1	1060	broad.mit.edu	37	chr4	68380143	68380143	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctactgggtgaggtttatGggaatgtttgtcatttgcca	12	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68380143	C	C	68380143	3	2	9	1	0	0	0	0	1	0	0	0	3259	1348	47	4	1786	4	CENPC1	4	68380143	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1912122	68380143	122774133	5700	13851											
UBA6	55236	broad.mit.edu	37	chr4	68500235	68500235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctcttctgggggatccCgctaatttataaaatatgac	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68500235	A	A	68500235	3	1	9	1	0	0	0	0	1	0	0	0	16958	666	23	1	1366	1	UBA6	4	68500235	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120092	68500235	122654041	5701	13852											
UBA6	55236	broad.mit.edu	37	chr4	68506919	68506919	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctatttaagttggatttctCtatcaagtcaggatctgtaa	7	6	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68506919	A	A	68506919	4	1	9	1	0	0	0	0	0	1	0	0	16958	922	32	3	1718	3	UBA6	4	68506919	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6684	68506919	122647357	5702	13853											
GNRHR	2798	broad.mit.edu	37	chr4	68606378	68606378	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaagtggcaaatgcaacCgtcatttttagagtcttcag	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68606378	A	A	68606378	2	1	9	1	0	0	0	0	0	0	0	1	6613	652	23	1		1	GNRHR	4	68606378	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	99459	68606378	122547898	5703	13854											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68780428	68780428	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattttcactctggcttctcGgagatcattttgggattccc	9	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68780428	T	T	68780428	2	4	9	1	0	0	0	0	0	0	0	1	16362	1124	39	1		1	TMPRSS11A	4	68780428	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	174050	68780428	122373848	5704	13855											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68780448	68780448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagatcattttgggattccCcttaaggaaaaatagagtta	10	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68780448	A	A	68780448	3	1	9	1	0	0	0	0	1	0	0	0	16362	637	22	2	311	2	TMPRSS11A	4	68780448	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	68780448	122373828	5705	13856											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68928685	68928685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaatttctggaactgaccCgtcttcgagagactgacatg	11	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68928685	A	A	68928685	1	1	9	0	1	0	0	0	0	0	0	0	16366	667	23	1		1	TMPRSS11F	4	68928685	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	148237	68928685	122225591	5706	13857											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68935564	68935564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaaagactaagtgttcGgtttacaaaaatataaaatg	6	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68935564	T	T	68935564	1	4	9	0	1	0	0	0	0	0	0	0	16366	1131	39	1		1	TMPRSS11F	4	68935564	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6879	68935564	122218712	5707	13858											
UGT2B15	7366	broad.mit.edu	37	chr4	69519967	69519967	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttataaaagctttggttttGggatgacctaaaagtggatg	12	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69519967	T	T	69519967	2	4	9	1	0	0	0	0	0	0	0	1	17084	1335	47	2		2	UGT2B15	4	69519967	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	584403	69519967	121634309	5708	13859											
UGT2B10	7365	broad.mit.edu	37	chr4	69683792	69683792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaggaaagctgacatatGgcttatgcgaaactcctgga	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69683792	T	T	69683792	3	4	9	1	0	0	0	0	1	0	0	0	17082	1357	47	2	770	2	UGT2B10	4	69683792	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	163825	69683792	121470484	5709	13860											
UGT2B10	7365	broad.mit.edu	37	chr4	69696437	69696437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaggagccaaacatcttcGagttgcagcccacaacctca	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69696437	T	T	69696437	3	4	9	1	0	0	0	0	1	0	0	0	17082	1058	37	3	1449	3	UGT2B10	4	69696437	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12645	69696437	121457839	5710	13861											
UGT2A3	79799	broad.mit.edu	37	chr4	69796272	69796272	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagtacttacgaggaatcGgtaatgactgttctcaaagc	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69796272	T	T	69796272	2	4	9	1	0	0	0	0	0	0	0	1	17081	1103	39	1		1	UGT2A3	4	69796272	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99835	69796272	121358004	5711	13862											
UGT2A3	79799	broad.mit.edu	37	chr4	69798366	69798366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgtgggatctgggcaaGggctgaagcaatgatattag	14	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69798366	T	T	69798366	3	4	9	1	0	0	0	0	1	0	0	0	17081	1000	35	2	623	2	UGT2A3	4	69798366	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2094	69798366	121355910	5712	13863											
UGT2B10	7365	broad.mit.edu	37	chr4	69870734	69870734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaggtcatgggctgcaactCgaaggtgtttggctcctttg	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69870734	A	A	69870734	3	1	9	1	0	0	0	0	1	0	0	0	17082	884	31	3	1774	3	UGT2B10	4	69870734	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72368	69870734	121283542	5713	13864											
UGT2B10	7365	broad.mit.edu	37	chr4	69885994	69885994	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagggctgtactctgcgGcccacaccagcacctttcca	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69885994	T	T	69885994	1	4	9	0	1	0	0	0	0	0	0	0	17082	1203	42	3		3	UGT2B10	4	69885994	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	15260	69885994	121268282	5714	13865											
UGT2B7	7364	broad.mit.edu	37	chr4	69962448	69962448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgatcccaacaactcatcCgctcttaaaattgaaattta	3	10	2	2	rs151180306		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69962448	A	A	69962448	2	1	9	1	0	0	0	0	0	0	0	1	17088	639	23	1		1	UGT2B7	4	69962448	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76454	69962448	121191828	5715	13866											
UGT2B7	7364	broad.mit.edu	37	chr4	69968649	69968649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagccctggcccagatccCacaaaaggtaagatgaagtg	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69968649	A	A	69968649	3	1	9	1	0	0	0	0	1	0	0	0	17088	594	21	2	1005	2	UGT2B7	4	69968649	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6201	69968649	121185627	5716	13867											
UGT2B7	7364	broad.mit.edu	37	chr4	69972834	69972834	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctactctttatacagttctCacattctataacttttgaat	2	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69972834	A	A	69972834	1	1	9	0	1	0	0	0	0	0	0	0	17088	841	29	3		3	UGT2B7	4	69972834	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4185	69972834	121181442	5717	13868											
UGT2B11	10720	broad.mit.edu	37	chr4	70070245	70070245	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcccttggccttcatgtGagcaatgttatcaggttgat	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70070245	T	T	70070245	3	4	9	1	0	0	0	0	1	0	0	0	17083	1290	45	3	384	3	UGT2B11	4	70070245	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97411	70070245	121084031	5718	13869											
UGT2B11	10720	broad.mit.edu	37	chr4	70071267	70071267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggcatctggtttattccCgtcaaatctccacagaacct	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70071267	A	A	70071267	3	1	9	1	0	0	0	0	1	0	0	0	17083	652	23	1	580	1	UGT2B11	4	70071267	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1022	70071267	121083009	5719	13870											
UGT2B11	10720	broad.mit.edu	37	chr4	70074076	70074076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttatcttaccttttgtGggatcttggcaagggctgtt	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70074076	T	T	70074076	3	4	9	1	0	0	0	0	1	0	0	0	17083	1348	47	2	610	2	UGT2B11	4	70074076	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2809	70074076	121080200	5720	13871											
UGT2B11	10720	broad.mit.edu	37	chr4	70080355	70080355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggctgtattctgcggccCacaccagcacttttccacaa	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70080355	A	A	70080355	3	1	9	1	0	0	0	0	1	0	0	0	17083	595	21	2	1527	2	UGT2B11	4	70080355	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6279	70080355	121073921	5721	13872											
UGT2B28	54490	broad.mit.edu	37	chr4	70146440	70146440	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacgcattcactcttaaactCgaagtttatcctacatcttt	4	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70146440	A	A	70146440	2	1	9	1	0	0	0	0	0	0	0	1	17086	871	31	3		3	UGT2B28	4	70146440	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66085	70146440	121007836	5722	13873											
SULT1B1	27284	broad.mit.edu	37	chr4	70620405	70620405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgatgttcttaatccaGggagagtcatttccaacatt	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70620405	T	T	70620405	3	4	9	1	0	0	0	0	1	0	0	0	15494	1000	35	2	654	2	SULT1B1	4	70620405	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	473965	70620405	120533871	5723	13874											
SULT1B1	27284	broad.mit.edu	37	chr4	70620552	70620552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattttcaaaataattaccCaaattgcacgggagagggag	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70620552	A	A	70620552	1	1	9	0	1	0	0	0	0	0	0	0	15494	609	21	2		2	SULT1B1	4	70620552	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	147	70620552	120533724	5724	13875											
HTN3	3347	broad.mit.edu	37	chr4	70898941	70898941	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgtatgacaattgatatCttcagtaatcacggggcatg	9	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70898941	T	T	70898941	1	4	9	0	1	0	0	0	0	0	0	0	7505	928	32	4		4	HTN3	4	70898941	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	278389	70898941	120255335	5725	13876											
C4orf40	401137	broad.mit.edu	37	chr4	71020109	71020109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatgaagcttctcctttGggcctgcattgtatgtgttg	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71020109	T	T	71020109	3	4	9	1	0	0	0	0	1	0	0	0	2292	1357	47	2	19	2	C4orf40	4	71020109	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121168	71020109	120134167	5726	13877											
ODAM	54959	broad.mit.edu	37	chr4	71063762	71063762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtttgctggactgctccCaaatcagatacccttaacag	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71063762	A	A	71063762	3	1	9	1	0	0	0	0	1	0	0	0	10919	594	21	2	277	2	ODAM	4	71063762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43653	71063762	120090514	5727	13878											
ODAM	54959	broad.mit.edu	37	chr4	71068912	71068912	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaccataagaagttgccCtgatcattcagacattttgg	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71068912	A	A	71068912	1	1	9	0	1	0	0	0	0	0	0	0	10919	696	24	2		2	ODAM	4	71068912	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	5150	71068912	120085364	5728	13879											
C4orf7	260436	broad.mit.edu	37	chr4	71099764	71099764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcgatgaattagcttcaGggttttttgtgttcccttac	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71099764	T	T	71099764	3	4	9	1	0	0	0	0	1	0	0	0	2302	1000	35	2	128	2	C4orf7	4	71099764	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30852	71099764	120054512	5729	13880											
PROL1	58503	broad.mit.edu	37	chr4	71275251	71275251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttccctttgtcccagggcGagttccaccatcttctttct	6	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71275251	T	T	71275251	3	4	9	1	0	0	0	0	1	0	0	0	12660	1058	37	3	212	3	PROL1	4	71275251	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	175487	71275251	119879025	5730	13881											
AMTN	401138	broad.mit.edu	37	chr4	71389633	71389633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacacagatgctcacactgGggccagatctgcatctggta	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71389633	T	T	71389633	3	4	9	1	0	0	0	0	1	0	0	0	590	1232	43	2	197	2	AMTN	4	71389633	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	114382	71389633	119764643	5731	13882											
AMBN	258	broad.mit.edu	37	chr4	71471905	71471905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtttttttttccagggcGggagagaagacccaatggcc	12	8	0	2	rs146167261	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71471905	T	T	71471905	3	4	9	1	0	0	0	0	1	0	0	0	563	1116	39	1	852	1	AMBN	4	71471905	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82272	71471905	119682371	5732	13883											
ENAM	10117	broad.mit.edu	37	chr4	71495231	71495231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaatgttggtgcttcGgtgcaggcttggaacctctt	12	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71495231	T	T	71495231	3	4	9	1	0	0	0	0	1	0	0	0	5154	1116	39	1	16	1	ENAM	4	71495231	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23326	71495231	119659045	5733	13884											
ENAM	10117	broad.mit.edu	37	chr4	71498375	71498375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggttgcagatgatgcGgtataatcaattcaacttta	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71498375	T	T	71498375	3	4	9	1	0	0	0	0	1	0	0	0	5154	1116	39	1	190	1	ENAM	4	71498375	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3144	71498375	119655901	5734	13885											
ENAM	10117	broad.mit.edu	37	chr4	71501570	71501570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcccaccatttggaaatGggctattcccctatcaacaa	5	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71501570	T	T	71501570	3	4	9	1	0	0	0	0	1	0	0	0	5154	1348	47	2	515	2	ENAM	4	71501570	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3195	71501570	119652706	5735	13886											
ENAM	10117	broad.mit.edu	37	chr4	71503587	71503587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtaaaactacattctcCactagaaattacaatccatt	2	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71503587	A	A	71503587	1	1	9	0	1	0	0	0	0	0	0	0	5154	609	21	2		2	ENAM	4	71503587	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2017	71503587	119650689	5736	13887											
UTP3	57050	broad.mit.edu	37	chr4	71555307	71555307	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaaggcttgttacctacCgaaatttgatcaacaagctg	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71555307	A	A	71555307	2	1	9	1	0	0	0	0	0	0	0	1	17228	644	23	1		1	UTP3	4	71555307	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51720	71555307	119598969	5737	13888											
RUFY3	22902	broad.mit.edu	37	chr4	71628285	71628285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacctcatgaacatggcCaagctgagtatcaagggctt	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71628285	A	A	71628285	2	1	9	1	0	0	0	0	0	0	0	1	13851	581	21	2		2	RUFY3	4	71628285	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72978	71628285	119525991	5738	13889											
RUFY3	22902	broad.mit.edu	37	chr4	71629286	71629286	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctaaaaaaacttttctcGgacaaaataaatccttctgg	5	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71629286	T	T	71629286	4	4	9	1	0	0	0	0	0	1	0	0	13851	1117	39	1	742	1	RUFY3	4	71629286	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1001	71629286	119524990	5739	13890											
RUFY3	22902	broad.mit.edu	37	chr4	71668687	71668687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaggctgcaaccccaccCtatggatgaacaggtaacag	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71668687	A	A	71668687	3	1	9	1	0	0	0	0	1	0	0	0	13851	681	24	2	2142	2	RUFY3	4	71668687	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39401	71668687	119485589	5740	13891											
MOBKL1A	92597	broad.mit.edu	37	chr4	71844851	71844851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctcttttctaggtgtccCgttcccaaagaatttcatgt	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71844851	A	A	71844851	3	1	9	1	0	0	0	0	1	0	0	0	9776	652	23	1	434	1	MOBKL1A	4	71844851	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	176164	71844851	119309425	5741	13892											
DCK	1633	broad.mit.edu	37	chr4	71891558	71891558	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacatagaatatatttacGgggaagaaatgaagagcaag	10	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71891558	T	T	71891558	3	4	9	1	0	0	0	0	1	0	0	0	4323	1116	39	1	593	1	DCK	4	71891558	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46707	71891558	119262718	5742	13893											
SLC4A4	8671	broad.mit.edu	37	chr4	72338620	72338620	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttgcagattactacccCatcaactccaacttcaaagt	4	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72338620	A	A	72338620	2	1	9	1	0	0	0	0	0	0	0	1	14770	581	21	2		2	SLC4A4	4	72338620	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	447062	72338620	118815656	5743	13894											
SLC4A4	8671	broad.mit.edu	37	chr4	72420899	72420899	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgtgttcctgtatatgGgagtagcatcccttaatggt	12	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72420899	T	T	72420899	4	4	9	1	0	0	0	0	0	1	0	0	14770	1233	43	2	2936	2	SLC4A4	4	72420899	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82279	72420899	118733377	5744	13895											
SLC4A4	8671	broad.mit.edu	37	chr4	72420911	72420911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatatgggagtagcatccCttaatggtgtgcaggtaagt	13	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72420911	A	A	72420911	3	1	9	1	0	0	0	0	1	0	0	0	14770	681	24	2	2948	2	SLC4A4	4	72420911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	72420911	118733365	5745	13896											
GC	2638	broad.mit.edu	37	chr4	72623869	72623869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagcagtaggcactttttGggctaactttatgagattgc	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72623869	T	T	72623869	3	4	9	1	0	0	0	0	1	0	0	0	6344	1357	47	2	727	2	GC	4	72623869	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	202958	72623869	118530407	5746	13897											
ADAMTS3	9508	broad.mit.edu	37	chr4	73205264	73205264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctctttgccatggaaacGgaccacagagtcatccactc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73205264	T	T	73205264	3	4	9	1	0	0	0	0	1	0	0	0	267	1116	39	1	2881	1	ADAMTS3	4	73205264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	581395	73205264	117949012	5747	13898											
ADAMTS3	9508	broad.mit.edu	37	chr4	73205280	73205280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacggaccacagagtcatcCactcccagcagtacctcgat	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73205280	A	A	73205280	2	1	9	1	0	0	0	0	0	0	0	1	267	581	21	2		2	ADAMTS3	4	73205280	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	73205280	117948996	5748	13899											
ANKRD17	26057	broad.mit.edu	37	chr4	73943199	73943199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcctgggtcagacatcGgtctgtggatcataggattt	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73943199	T	T	73943199	3	4	9	1	0	0	0	0	1	0	0	0	646	1116	39	1	363	1	ANKRD17	4	73943199	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	737919	73943199	117211077	5749	13900											
ANKRD17	26057	broad.mit.edu	37	chr4	73950950	73950950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagattcttatggaattacGgtgtataaaactcaccattt	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73950950	T	T	73950950	1	4	9	0	1	0	0	0	0	0	0	0	646	1131	39	1		1	ANKRD17	4	73950950	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7751	73950950	117203326	5750	13901											
ANKRD17	26057	broad.mit.edu	37	chr4	73956586	73956586	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaaacaatgtgctaaaGggcccaaatggtaagggggc	12	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73956586	T	T	73956586	2	4	9	1	0	0	0	0	0	0	0	1	646	987	35	2		2	ANKRD17	4	73956586	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5636	73956586	117197690	5751	13902											
ANKRD17	26057	broad.mit.edu	37	chr4	73956901	73956901	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggggcagtagaaggcacCgccactggagcagaacttgt	14	10	0	2	rs61250662	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73956901	A	A	73956901	2	1	9	1	0	0	0	0	0	0	0	1	646	639	23	1		1	ANKRD17	4	73956901	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	315	73956901	117197375	5752	13903											
ANKRD17	26057	broad.mit.edu	37	chr4	73956953	73956953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacagtcattctaacttccGggggaggaacctgagactgc	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73956953	T	T	73956953	3	4	9	1	0	0	0	0	1	0	0	0	646	1116	39	1	1443	1	ANKRD17	4	73956953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	73956953	117197323	5753	13904											
ANKRD17	26057	broad.mit.edu	37	chr4	73959812	73959812	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccttatagtgattatccGgtctccagtcttgtctttct	7	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73959812	T	T	73959812	2	4	9	1	0	0	0	0	0	0	0	1	646	1115	39	1		1	ANKRD17	4	73959812	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2859	73959812	117194464	5754	13905											
ALB	213	broad.mit.edu	37	chr4	74276042	74276042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtagctcgatgaacttcGggatgaagggaaggcttcgt	14	6	0	2	rs58624704		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74276042	T	T	74276042	3	4	9	1	0	0	0	0	1	0	0	0	486	1116	39	1	651	1	ALB	4	74276042	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	316230	74276042	116878234	5755	13906											
AFP	174	broad.mit.edu	37	chr4	74320977	74320977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaaactgatttcaaaaactCgtgctgctttgggagtttaa	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74320977	A	A	74320977	3	1	9	1	0	0	0	0	1	0	0	0	363	884	31	3	1864	3	AFP	4	74320977	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44935	74320977	116833299	5756	13907											
AFP	174	broad.mit.edu	37	chr4	74321021	74321021	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttcaggtaacaaaacattCagacaagcctgaatacaatg	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74321021	A	A	74321021	1	1	9	0	1	0	0	0	0	0	0	0	363	841	29	3		3	AFP	4	74321021	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	74321021	116833255	5757	13908											
AFM	173	broad.mit.edu	37	chr4	74351740	74351740	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttccctaccctggatccCgaagagaaatgccaggctta	8	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74351740	A	A	74351740	2	1	9	1	0	0	0	0	0	0	0	1	361	639	23	1		1	AFM	4	74351740	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30719	74351740	116802536	5758	13909											
RASSF6	166824	broad.mit.edu	37	chr4	74442418	74442418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggagcctctgcagtagcGgaatgtctgtcttctttagt	12	8	4	0	rs141700472		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74442418	T	T	74442418	3	4	9	1	0	0	0	0	1	0	0	0	13198	1116	39	1	273	1	RASSF6	4	74442418	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90678	74442418	116711858	5759	13910											
CXCL6	6372	broad.mit.edu	37	chr4	74702936	74702936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagcctccctgaagaacGggaagcaagtttgtctggac	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74702936	T	T	74702936	3	4	9	1	0	0	0	0	1	0	0	0	4121	1116	39	1	269	1	CXCL6	4	74702936	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	260518	74702936	116451340	5760	13911											
CXCL5	6374	broad.mit.edu	37	chr4	74863730	74863730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcaaagtgacaagtaccCgtccaaaattttctggatga	8	8	2	3	rs111813861	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74863730	A	A	74863730	3	1	9	1	0	0	0	0	1	0	0	0	4120	666	23	1	27	1	CXCL5	4	74863730	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160794	74863730	116290546	5761	13912											
CXCL2	2920	broad.mit.edu	37	chr4	74964657	74964657	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctagggaagaagagactCgctgattgagcggggctgtc	15	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74964657	A	A	74964657	1	1	9	0	1	0	0	0	0	0	0	0	4118	899	31	3		3	CXCL2	4	74964657	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	100927	74964657	116189619	5762	13913											
EREG	2069	broad.mit.edu	37	chr4	75245219	75245219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgattccatcatgtatccCaggagagtccagtgataact	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75245219	A	A	75245219	3	1	9	1	0	0	0	0	1	0	0	0	5262	594	21	2	128	2	EREG	4	75245219	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	280562	75245219	115909057	5763	13914											
BTC	685	broad.mit.edu	37	chr4	75675910	75675910	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactctctcacaccttgctcCaatgtagccttcatcacagc	4	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75675910	A	A	75675910	4	1	9	1	0	0	0	0	0	1	0	0	1559	603	21	2	243	2	BTC	4	75675910	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	430691	75675910	115478366	5764	13915											
G3BP2	9908	broad.mit.edu	37	chr4	76582199	76582199	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttatttggaacagatccCtataggaaacaacatttatt	5	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76582199	A	A	76582199	5	1	9	1	0	0	0	0	0	0	1	0	6202	695	24	2	1129	2	G3BP2	4	76582199	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	906289	76582199	114572077	5765	13916											
G3BP2	9908	broad.mit.edu	37	chr4	76584198	76584198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagactaggttccggatccCgctctgtcactaattagttg	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76584198	A	A	76584198	1	1	9	0	1	0	0	0	0	0	0	0	6202	667	23	1		1	G3BP2	4	76584198	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1999	76584198	114570078	5766	13917											
PPEF2	5470	broad.mit.edu	37	chr4	76812872	76812872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggagctgcagaagaaccCaaggagacgtggctttagag	14	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76812872	A	A	76812872	1	1	9	0	1	0	0	0	0	0	0	0	12404	609	21	2		2	PPEF2	4	76812872	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	228674	76812872	114341404	5767	13918											
SDAD1	55153	broad.mit.edu	37	chr4	76882182	76882182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagtgtgctttacctaccCggaatttcttctgcagcatc	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76882182	A	A	76882182	3	1	9	1	0	0	0	0	1	0	0	0	14063	666	23	1	736	1	SDAD1	4	76882182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69310	76882182	114272094	5768	13919											
ART3	419	broad.mit.edu	37	chr4	76997051	76997051	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaagagaaaaatgaagacGggacattttgaaatagtcac	10	4	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76997051	T	T	76997051	2	4	9	1	0	0	0	0	0	0	0	1	1002	1103	39	1		1	ART3	4	76997051	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	114869	76997051	114157225	5769	13920											
ART3	419	broad.mit.edu	37	chr4	77025122	77025122	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaacccacccaaatacctGgtaagacagctttctattta	5	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77025122	T	T	77025122	4	4	9	1	0	0	0	0	0	1	0	0	1002	1362	47	2	1000	2	ART3	4	77025122	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28071	77025122	114129154	5770	13921											
NUP54	53371	broad.mit.edu	37	chr4	77065428	77065428	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatccaaaacctttgttctGagtaccaccaaagagtcctt	5	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77065428	T	T	77065428	3	4	9	1	0	0	0	0	1	0	0	0	10862	1299	45	3	1394	3	NUP54	4	77065428	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40306	77065428	114088848	5771	13922											
SCARB2	950	broad.mit.edu	37	chr4	77087448	77087448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatggttctaatgtctccCgtttcactacaaagacaaag	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77087448	A	A	77087448	2	1	9	1	0	0	0	0	0	0	0	1	13994	639	23	1		1	SCARB2	4	77087448	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22020	77087448	114066828	5772	13923											
SCARB2	950	broad.mit.edu	37	chr4	77095192	77095192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcatccttagtagctGggactgtaggtgtgcgccac	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77095192	T	T	77095192	1	4	9	0	1	0	0	0	0	0	0	0	13994	1363	47	2		2	SCARB2	4	77095192	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7744	77095192	114059084	5773	13924											
CCDC158	339965	broad.mit.edu	37	chr4	77265818	77265818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacacaaagaccacactgcCcatgtttcagagcccagagt	8	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77265818	A	A	77265818	1	1	9	0	1	0	0	0	0	0	0	0	2817	638	22	2		2	CCDC158	4	77265818	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	170626	77265818	113888458	5774	13925											
CCDC158	339965	broad.mit.edu	37	chr4	77283363	77283363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgtccttcactgcacGgagccgctcagagcctgcat	10	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77283363	T	T	77283363	3	4	9	1	0	0	0	0	1	0	0	0	2817	1116	39	1	1457	1	CCDC158	4	77283363	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17545	77283363	113870913	5775	13926											
CCDC158	339965	broad.mit.edu	37	chr4	77290670	77290670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttccggttgtccagttccCgccgcaggtggtcaatggtg	14	11	1	0	rs79260649	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77290670	A	A	77290670	3	1	9	1	0	0	0	0	1	0	0	0	2817	652	23	1	2145	1	CCDC158	4	77290670	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7307	77290670	113863606	5776	13927											
SHROOM3	57619	broad.mit.edu	37	chr4	77357357	77357357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctggagcacggagaacCattaatcatctctaaggtat	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77357357	A	A	77357357	3	1	9	1	0	0	0	0	1	0	0	0	14408	594	21	2	154	2	SHROOM3	4	77357357	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66687	77357357	113796919	5777	13928											
SHROOM3	57619	broad.mit.edu	37	chr4	77661143	77661143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccacagcctcaaatgccCtcaggctcaggcctggcaag	9	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77661143	A	A	77661143	3	1	9	1	0	0	0	0	1	0	0	0	14408	681	24	2	1835	2	SHROOM3	4	77661143	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	303786	77661143	113493133	5778	13929											
SHROOM3	57619	broad.mit.edu	37	chr4	77675421	77675421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgggctgcatgtttgcccCtttcttcagagctgtaaccc	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77675421	A	A	77675421	1	1	9	0	1	0	0	0	0	0	0	0	14408	696	24	2		2	SHROOM3	4	77675421	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14278	77675421	113478855	5779	13930											
ANKRD56	345079	broad.mit.edu	37	chr4	77816775	77816775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcttggcctttctggtaGgggaagaacttccaactaag	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77816775	T	T	77816775	3	4	9	1	0	0	0	0	1	0	0	0	682	1000	35	2	157	2	ANKRD56	4	77816775	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	141354	77816775	113337501	5780	13931											
CNOT6L	246175	broad.mit.edu	37	chr4	78641571	78641571	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagatccccgtcttggcGgggcagtactccactacctc	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78641571	T	T	78641571	1	4	9	0	1	0	0	0	0	0	0	0	3655	1131	39	1		1	CNOT6L	4	78641571	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	824796	78641571	112512705	5781	13932											
CNOT6L	246175	broad.mit.edu	37	chr4	78650049	78650049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgcacatagcaccagcGggatggaattaggatctgca	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78650049	T	T	78650049	3	4	9	1	0	0	0	0	1	0	0	0	3655	1116	39	1	468	1	CNOT6L	4	78650049	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8478	78650049	112504227	5782	13933											
CNOT6L	246175	broad.mit.edu	37	chr4	78740398	78740398	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcccacctcatttccccGgggacgcgctcctcttccca	6	21	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78740398	T	T	78740398	1	4	9	0	1	0	0	0	0	0	0	0	3655	1131	39	1		1	CNOT6L	4	78740398	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	90349	78740398	112413878	5783	13934											
MRPL1	65008	broad.mit.edu	37	chr4	78830384	78830384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatttttactacttatttGgagtgataattgtggatttt	8	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78830384	T	T	78830384	1	4	9	0	1	0	0	0	0	0	0	0	9868	1363	47	2		2	MRPL1	4	78830384	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	89986	78830384	112323892	5784	13935											
MRPL1	65008	broad.mit.edu	37	chr4	78870953	78870953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattattttctttcagttGgatatgtcaagtgaccagat	7	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78870953	T	T	78870953	3	4	9	1	0	0	0	0	1	0	0	0	9868	1339	47	2	810	2	MRPL1	4	78870953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40569	78870953	112283323	5785	13936											
FRAS1	80144	broad.mit.edu	37	chr4	79305229	79305229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaaaggttaccttttcCtgaaaattagtgaccagcag	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79305229	A	A	79305229	3	1	9	1	0	0	0	0	1	0	0	0	6102	680	24	2	3690	2	FRAS1	4	79305229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	434276	79305229	111849047	5786	13937											
FRAS1	80144	broad.mit.edu	37	chr4	79360270	79360270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactatagagagctggaatcCgtagtaatgtaaatgaagga	11	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79360270	A	A	79360270	1	1	9	0	1	0	0	0	0	0	0	0	6102	667	23	1		1	FRAS1	4	79360270	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55041	79360270	111794006	5787	13938											
FRAS1	80144	broad.mit.edu	37	chr4	79394642	79394642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcacaaggagaagatcCgtgagatgatggatagtttt	13	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79394642	A	A	79394642	3	1	9	1	0	0	0	0	1	0	0	0	6102	652	23	1	7858	1	FRAS1	4	79394642	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34372	79394642	111759634	5788	13939											
FRAS1	80144	broad.mit.edu	37	chr4	79400662	79400662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgagtcgtgtgatattcGggcctggtgtgaccatgtcc	14	11	0	2	rs139988760	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79400662	T	T	79400662	3	4	9	1	0	0	0	0	1	0	0	0	6102	1116	39	1	8530	1	FRAS1	4	79400662	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6020	79400662	111753614	5789	13940											
FRAS1	80144	broad.mit.edu	37	chr4	79434558	79434558	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctagaatccacatttcGgtgcagatcccacaccagga	7	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79434558	T	T	79434558	2	4	9	1	0	0	0	0	0	0	0	1	6102	1103	39	1		1	FRAS1	4	79434558	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33896	79434558	111719718	5790	13941											
BMP2K	55589	broad.mit.edu	37	chr4	79772189	79772189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaattctcgttactccCgtaacatacattgcttaata	4	11	1	1	rs113647501	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79772189	A	A	79772189	3	1	9	1	0	0	0	0	1	0	0	0	1466	652	23	1	888	1	BMP2K	4	79772189	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	337631	79772189	111382087	5791	13942											
C4orf22	255119	broad.mit.edu	37	chr4	81283923	81283923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaggatgaaaccctggccCgccagttggtggagctaggc	14	11	1	1	rs114876252	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81283923	A	A	81283923	3	1	9	1	0	0	0	0	1	0	0	0	2278	652	23	1	133	1	C4orf22	4	81283923	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1511734	81283923	109870353	5792	13943											
PRKG2	5593	broad.mit.edu	37	chr4	82096088	82096088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaactgatttttattaaGggcatctgtaatgagcttct	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82096088	T	T	82096088	3	4	9	1	0	0	0	0	1	0	0	0	12629	1000	35	2	1869	2	PRKG2	4	82096088	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	812165	82096088	109058188	5793	13944											
PRKG2	5593	broad.mit.edu	37	chr4	82125807	82125807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgttcaggtcataggtcCgggttgttggctcagcagac	14	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82125807	A	A	82125807	3	1	9	1	0	0	0	0	1	0	0	0	12629	652	23	1	1965	1	PRKG2	4	82125807	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29719	82125807	109028469	5794	13945											
RASGEF1B	153020	broad.mit.edu	37	chr4	82355110	82355110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttgtttggccagttccCaaaatttctggaagataagt	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82355110	A	A	82355110	3	1	9	1	0	0	0	0	1	0	0	0	13178	595	21	2	225	2	RASGEF1B	4	82355110	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	229303	82355110	108799166	5795	13946											
RASGEF1B	153020	broad.mit.edu	37	chr4	82362032	82362032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagacctttgtgctgcccCacgaagagctgttcgataat	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82362032	A	A	82362032	3	1	9	1	0	0	0	0	1	0	0	0	13178	594	21	2	381	2	RASGEF1B	4	82362032	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6922	82362032	108792244	5796	13947											
RASGEF1B	153020	broad.mit.edu	37	chr4	82366727	82366727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaatgttaaaacactccCgagctacgtcaatgaaatac	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82366727	A	A	82366727	3	1	9	1	0	0	0	0	1	0	0	0	13178	652	23	1	568	1	RASGEF1B	4	82366727	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4695	82366727	108787549	5797	13948											
RASGEF1B	153020	broad.mit.edu	37	chr4	82366976	82366976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagtttcgtgttttcttcCgttcactgtagcaactcttt	6	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82366976	A	A	82366976	3	1	9	1	0	0	0	0	1	0	0	0	13178	652	23	1	707	1	RASGEF1B	4	82366976	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	249	82366976	108787300	5798	13949											
SCD5	79966	broad.mit.edu	37	chr4	83582083	83582083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatcaagcagcacttttcGgagtggttacaatgagtatg	11	7	1	1	rs17006063	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83582083	T	T	83582083	1	4	9	0	1	0	0	0	0	0	0	0	13999	1103	39	1		1	SCD5	4	83582083	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1215107	83582083	107572193	5799	13950											
SCD5	79966	broad.mit.edu	37	chr4	83582217	83582217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagctcttccttctttctGgatgtgctgtgtactgataa	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83582217	T	T	83582217	1	4	9	0	1	0	0	0	0	0	0	0	13999	1357	47	2		2	SCD5	4	83582217	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	134	83582217	107572059	5800	13951											
SCD5	79966	broad.mit.edu	37	chr4	83601919	83601919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacgtcaagctttctcccCttctcaataacatctcgatg	6	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83601919	A	A	83601919	3	1	9	1	0	0	0	0	1	0	0	0	13999	680	24	2	700	2	SCD5	4	83601919	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19702	83601919	107552357	5801	13952											
SEC31A	22872	broad.mit.edu	37	chr4	83748733	83748733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgactgggggtcacccaacGggttcatgattggtgatgtg	16	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83748733	T	T	83748733	3	4	9	1	0	0	0	0	1	0	0	0	14111	1116	39	1	598	1	SEC31A	4	83748733	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	146814	83748733	107405543	5802	13953											
SEC31A	22872	broad.mit.edu	37	chr4	83801997	83801997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatttcatatccaaggatGgatcagagaggtctaattca	9	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83801997	T	T	83801997	3	4	9	1	0	0	0	0	1	0	0	0	14111	1348	47	2	3604	2	SEC31A	4	83801997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53264	83801997	107352279	5803	13954											
THAP9	79725	broad.mit.edu	37	chr4	83828962	83828962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtgggagttatataattGgagagaaacagatgagtact	12	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83828962	T	T	83828962	3	4	9	1	0	0	0	0	1	0	0	0	15974	1357	47	2	619	2	THAP9	4	83828962	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26965	83828962	107325314	5804	13955											
THAP9	79725	broad.mit.edu	37	chr4	83838359	83838359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagtgggtatttttggcCattggagaacacctcttggt	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83838359	A	A	83838359	3	1	9	1	0	0	0	0	1	0	0	0	15974	594	21	2	1012	2	THAP9	4	83838359	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9397	83838359	107315917	5805	13956											
LIN54	132660	broad.mit.edu	37	chr4	83861082	83861082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaattggaactgacatcCgcactggggttgtattaaca	10	8	0	2	rs151223574		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83861082	A	A	83861082	3	1	9	1	0	0	0	0	1	0	0	0	8882	652	23	1	1079	1	LIN54	4	83861082	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22723	83861082	107293194	5806	13957											
LIN54	132660	broad.mit.edu	37	chr4	83891597	83891597	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtctttgatggagttccGggagtagactgtgaaagaac	14	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83891597	T	T	83891597	2	4	9	1	0	0	0	0	0	0	0	1	8882	1103	39	1		1	LIN54	4	83891597	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30515	83891597	107262679	5807	13958											
HPSE	10855	broad.mit.edu	37	chr4	84231892	84231892	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctcttcagcatcttagcCgtctttcttcgaggctgacc	7	14	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84231892	A	A	84231892	2	1	9	1	0	0	0	0	0	0	0	1	7411	639	23	1		1	HPSE	4	84231892	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	340295	84231892	106922384	5808	13959											
HPSE	10855	broad.mit.edu	37	chr4	84240459	84240459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctattcaaatatctttGgggctggaacatctctaggg	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84240459	T	T	84240459	1	4	9	0	1	0	0	0	0	0	0	0	7411	1363	47	2		2	HPSE	4	84240459	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8567	84240459	106913817	5809	13960											
HELQ	113510	broad.mit.edu	37	chr4	84347106	84347106	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtgagtgaactaagtgttGagtgaacttattatttagga	11	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84347106	T	T	84347106	1	4	9	0	1	0	0	0	0	0	0	0	7114	1305	45	3		3	HELQ	4	84347106	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	106647	84347106	106807170	5810	13961											
MRPS18C	51023	broad.mit.edu	37	chr4	84377317	84377317	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcagccttacacatccCgggactcacacgggtaaagt	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84377317	A	A	84377317	2	1	9	1	0	0	0	0	0	0	0	1	9924	639	23	1		1	MRPS18C	4	84377317	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30211	84377317	106776959	5811	13962											
FAM175A	84142	broad.mit.edu	37	chr4	84390217	84390217	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctcggctaaaaccagtGgacatacaggaacctgatac	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84390217	T	T	84390217	2	4	9	1	0	0	0	0	0	0	0	1	5542	1335	47	2		2	FAM175A	4	84390217	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12900	84390217	106764059	5812	13963											
AGPAT9	84803	broad.mit.edu	37	chr4	84465652	84465652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttttatgttgtgtctgtGggacagtttaaattaatatt	10	2	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84465652	T	T	84465652	1	4	9	0	1	0	0	0	0	0	0	0	392	1363	47	2		2	AGPAT9	4	84465652	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	75435	84465652	106688624	5813	13964											
AGPAT9	84803	broad.mit.edu	37	chr4	84515957	84515957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaactttctttgcacaacGgtgccttttacgttttttcc	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84515957	T	T	84515957	1	4	9	0	1	0	0	0	0	0	0	0	392	1131	39	1		1	AGPAT9	4	84515957	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	50305	84515957	106638319	5814	13965											
NKX6-1	4825	broad.mit.edu	37	chr4	85414595	85414595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcctcttcctcgttctcCgaggcccccttgaggcgctc	9	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85414595	A	A	85414595	2	1	9	1	0	0	0	0	0	0	0	1	10552	639	23	1		1	NKX6-1	4	85414595	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	898638	85414595	105739681	5815	13966											
NKX6-1	4825	broad.mit.edu	37	chr4	85416968	85416968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgtgtgttttctcttccCgtctttgtccaacaaaatgg	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85416968	A	A	85416968	3	1	9	1	0	0	0	0	1	0	0	0	10552	652	23	1	411	1	NKX6-1	4	85416968	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2373	85416968	105737308	5816	13967											
CDS1	1040	broad.mit.edu	37	chr4	85552945	85552945	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgtaccaaattgtacaacGagcacatgttttttgttctt	6	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85552945	T	T	85552945	1	4	9	0	1	0	0	0	0	0	0	0	3207	1073	37	3		3	CDS1	4	85552945	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	135977	85552945	105601331	5817	13968											
CDS1	1040	broad.mit.edu	37	chr4	85564176	85564176	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttctttctcctctttaGgaaagagtgagcttgtaccc	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85564176	T	T	85564176	5	4	9	1	0	0	0	0	0	0	1	0	3207	1014	35	2	1074	2	CDS1	4	85564176	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	11231	85564176	105590100	5818	13969											
WDFY3	23001	broad.mit.edu	37	chr4	85609343	85609343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatacaggttcgatcacGggacccactgacaattatgt	9	9	1	2	rs150572140		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85609343	T	T	85609343	3	4	9	1	0	0	0	0	1	0	0	0	17397	1116	39	1	1169	1	WDFY3	4	85609343	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45167	85609343	105544933	5819	13970											
WDFY3	23001	broad.mit.edu	37	chr4	85654535	85654535	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaattctgcatactcacCgccacatttgtctcttgctc	5	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85654535	A	A	85654535	2	1	9	1	0	0	0	0	0	0	0	1	17397	666	23	1		1	WDFY3	4	85654535	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45192	85654535	105499741	5820	13971											
WDFY3	23001	broad.mit.edu	37	chr4	85701301	85701301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttctttgctggctagtGggttactcttgaccacacaa	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85701301	T	T	85701301	3	4	9	1	0	0	0	0	1	0	0	0	17397	1348	47	2	6427	2	WDFY3	4	85701301	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46766	85701301	105452975	5821	13972											
WDFY3	23001	broad.mit.edu	37	chr4	85731138	85731138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctattgagattacatcttcCtctaaaagtctttgaaatgg	6	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85731138	A	A	85731138	3	1	9	1	0	0	0	0	1	0	0	0	17397	680	24	2	8596	2	WDFY3	4	85731138	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29837	85731138	105423138	5822	13973											
ARHGAP24	83478	broad.mit.edu	37	chr4	86898750	86898750	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagtacagtcctactcGggagttaacaaaatgagtgt	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86898750	T	T	86898750	2	4	9	1	0	0	0	0	0	0	0	1	875	1103	39	1		1	ARHGAP24	4	86898750	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1167612	86898750	104255526	5823	13974											
ARHGAP24	83478	broad.mit.edu	37	chr4	86916015	86916015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcaaaaccaacagccCaaagaacagtgttcacaagc	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86916015	A	A	86916015	3	1	9	1	0	0	0	0	1	0	0	0	875	594	21	2	1354	2	ARHGAP24	4	86916015	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17265	86916015	104238261	5824	13975											
MAPK10	5602	broad.mit.edu	37	chr4	87080409	87080409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtctagtagttgcacacGgtgtgttccctttaaaaata	9	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87080409	T	T	87080409	1	4	9	0	1	0	0	0	0	0	0	0	9364	1131	39	1		1	MAPK10	4	87080409	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	164394	87080409	104073867	5825	13976											
PTPN13	5783	broad.mit.edu	37	chr4	87610263	87610263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggatgcttgcagtgccCacattaggaatagcaattgt	11	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87610263	A	A	87610263	3	1	9	1	0	0	0	0	1	0	0	0	12888	594	21	2	480	2	PTPN13	4	87610263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	529854	87610263	103544013	5826	13977											
PTPN13	5783	broad.mit.edu	37	chr4	87622754	87622754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaggcagtaacagtgcGgacttcaactactcctagaa	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87622754	T	T	87622754	3	4	9	1	0	0	0	0	1	0	0	0	12888	1116	39	1	1017	1	PTPN13	4	87622754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12491	87622754	103531522	5827	13978											
PTPN13	5783	broad.mit.edu	37	chr4	87666246	87666246	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagttccagctacagatgaGagcaagacagagcaaccaag	10	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87666246	T	T	87666246	3	4	9	1	0	0	0	0	1	0	0	0	12888	942	33	3	2677	3	PTPN13	4	87666246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43492	87666246	103488030	5828	13979											
PTPN13	5783	broad.mit.edu	37	chr4	87724935	87724935	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccctctggtaaatacacGggtgccaacttaaaatcagt	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87724935	T	T	87724935	2	4	9	1	0	0	0	0	0	0	0	1	12888	1103	39	1		1	PTPN13	4	87724935	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	58689	87724935	103429341	5829	13980											
PTPN13	5783	broad.mit.edu	37	chr4	87725040	87725040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgccaatgattctctccCaaagtgtatgcatttagttt	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87725040	A	A	87725040	1	1	9	0	1	0	0	0	0	0	0	0	12888	609	21	2		2	PTPN13	4	87725040	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	87725040	103429236	5830	13981											
PTPN13	5783	broad.mit.edu	37	chr4	87728860	87728860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttctggcagatgatttGggagcaaaaatccacagtga	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87728860	T	T	87728860	3	4	9	1	0	0	0	0	1	0	0	0	12888	1357	47	2	7082	2	PTPN13	4	87728860	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3820	87728860	103425416	5831	13982											
AFF1	4299	broad.mit.edu	37	chr4	88055581	88055581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgatccaggggtctactGgtgactgactgatcagttat	12	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88055581	T	T	88055581	1	4	9	0	1	0	0	0	0	0	0	0	356	1363	47	2		2	AFF1	4	88055581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	326721	88055581	103098695	5832	13983											
AFF1	4299	broad.mit.edu	37	chr4	88055674	88055674	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccttctcctgccagctcCgtagggtcccagtcaagtgc	10	15	2	0	rs138900630	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88055674	A	A	88055674	2	1	9	1	0	0	0	0	0	0	0	1	356	639	23	1		1	AFF1	4	88055674	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	88055674	103098602	5833	13984											
KLHL8	57563	broad.mit.edu	37	chr4	88085010	88085010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagataatataaagcacGgagacaacatgtaaattacc	7	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88085010	T	T	88085010	1	4	9	0	1	0	0	0	0	0	0	0	8466	1131	39	1		1	KLHL8	4	88085010	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29336	88085010	103069266	5834	13985											
NUDT9	53343	broad.mit.edu	37	chr4	88379141	88379141	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacgagatgcacactggagcGaggactctgaagctgactgc	13	10	1	3	rs146589373		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88379141	T	T	88379141	4	4	9	1	0	0	0	0	0	1	0	0	10841	1059	37	3	1051	3	NUDT9	4	88379141	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	294131	88379141	102775135	5835	13986											
SPARCL1	8404	broad.mit.edu	37	chr4	88415275	88415275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgctgttagcatgctccCtgggcaattctgtctttctt	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88415275	A	A	88415275	3	1	9	1	0	0	0	0	1	0	0	0	15112	681	24	2	1349	2	SPARCL1	4	88415275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36134	88415275	102739001	5836	13987											
SPARCL1	8404	broad.mit.edu	37	chr4	88415395	88415395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttggtttccttgatccCttaggccttggctatgttta	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88415395	A	A	88415395	3	1	9	1	0	0	0	0	1	0	0	0	15112	681	24	2	1469	2	SPARCL1	4	88415395	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120	88415395	102738881	5837	13988											
DMP1	1758	broad.mit.edu	37	chr4	88577676	88577676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgctcatgttcctttGgggattatcctgtgctctcc	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88577676	T	T	88577676	3	4	9	1	0	0	0	0	1	0	0	0	4623	1357	47	2	34	2	DMP1	4	88577676	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	162281	88577676	102576600	5838	13989											
DMP1	1758	broad.mit.edu	37	chr4	88584434	88584434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatcacaacaaacccattGgggaccaagatgacaatgac	7	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88584434	T	T	88584434	3	4	9	1	0	0	0	0	1	0	0	0	4623	1348	47	2	1522	2	DMP1	4	88584434	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6758	88584434	102569842	5839	13990											
MEPE	56955	broad.mit.edu	37	chr4	88767533	88767533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacaggaggtttagttccCgtagaagggatgacagtagt	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88767533	A	A	88767533	3	1	9	1	0	0	0	0	1	0	0	0	9571	652	23	1	1523	1	MEPE	4	88767533	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	183099	88767533	102386743	5840	13991											
SPP1	6696	broad.mit.edu	37	chr4	88903970	88903970	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatgctggttgtagacccCaaaagtaaggaagaagataa	11	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88903970	A	A	88903970	2	1	9	1	0	0	0	0	0	0	0	1	15204	581	21	2		2	SPP1	4	88903970	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	136437	88903970	102250306	5841	13992											
PKD2	5311	broad.mit.edu	37	chr4	88957413	88957413	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgtgtactactacaccCggatgatgtcacagctcttc	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88957413	A	A	88957413	2	1	9	1	0	0	0	0	0	0	0	1	12061	643	23	1		1	PKD2	4	88957413	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53443	88957413	102196863	5842	13993											
PKD2	5311	broad.mit.edu	37	chr4	88959450	88959450	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtactggaagatgcagccCagcaaccagactgaagctga	11	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88959450	A	A	88959450	2	1	9	1	0	0	0	0	0	0	0	1	12061	581	21	2		2	PKD2	4	88959450	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2037	88959450	102194826	5843	13994											
PKD2	5311	broad.mit.edu	37	chr4	88996609	88996609	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttctttttccctttttaGgatgaaaggctgggtcgtga	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88996609	T	T	88996609	5	4	9	1	0	0	0	0	0	0	1	0	12061	1014	35	2	2728	2	PKD2	4	88996609	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	37159	88996609	102157667	5844	13995											
ABCG2	9429	broad.mit.edu	37	chr4	89034589	89034589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcttcttctcaccccCggaaagttgatgtaattcag	6	12	5	1	rs138606116	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89034589	A	A	89034589	3	1	9	1	0	0	0	0	1	0	0	0	69	652	23	1	939	1	ABCG2	4	89034589	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37980	89034589	102119687	5845	13996											
HERC6	55008	broad.mit.edu	37	chr4	89334197	89334197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtatctaatatatcctGggtctgttccctgatcctat	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89334197	T	T	89334197	1	4	9	0	1	0	0	0	0	0	0	0	7129	1363	47	2		2	HERC6	4	89334197	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	299608	89334197	101820079	5846	13997											
HERC6	55008	broad.mit.edu	37	chr4	89358902	89358902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttgacttaattccaaatGggatctccatacctgtggac	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89358902	T	T	89358902	3	4	9	1	0	0	0	0	1	0	0	0	7129	1348	47	2	2399	2	HERC6	4	89358902	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24705	89358902	101795374	5847	13998											
HERC3	8916	broad.mit.edu	37	chr4	89571148	89571148	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggattctgtggcagtgccCaggtaagaaggttttcaaat	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89571148	A	A	89571148	2	1	9	1	0	0	0	0	0	0	0	1	7126	581	21	2		2	HERC3	4	89571148	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	212246	89571148	101583128	5848	13999											
NAP1L5	266812	broad.mit.edu	37	chr4	89618327	89618327	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaggcttttttcttcgtGggctttctcttcatccatct	6	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89618327	T	T	89618327	1	4	9	0	1	0	0	0	0	0	0	0	10254	1363	47	2		2	NAP1L5	4	89618327	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	47179	89618327	101535949	5849	14000											
FAM13A	10144	broad.mit.edu	37	chr4	89660162	89660162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtgttgtaccagccacGggaaggtattctactcacaa	10	9	2	0	rs2290356	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89660162	T	T	89660162	1	4	9	0	1	0	0	0	0	0	0	0	5498	1131	39	1		1	FAM13A	4	89660162	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41835	89660162	101494114	5850	14001											
FAM13A	10144	broad.mit.edu	37	chr4	89670117	89670117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacctttaagttgtctcCggaatttggcaaggtcattt	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89670117	A	A	89670117	3	1	9	1	0	0	0	0	1	0	0	0	5498	652	23	1	956	1	FAM13A	4	89670117	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9955	89670117	101484159	5851	14002											
FAM13A	10144	broad.mit.edu	37	chr4	89670156	89670156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccatttcagaacctccGgattggctgctttgtcactg	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89670156	T	T	89670156	3	4	9	1	0	0	0	0	1	0	0	0	5498	1116	39	1	995	1	FAM13A	4	89670156	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	89670156	101484120	5852	14003											
FAM13A	10144	broad.mit.edu	37	chr4	89711765	89711765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagacacattgctgacttGgggtacatgagcactgcaga	12	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89711765	T	T	89711765	3	4	9	1	0	0	0	0	1	0	0	0	5498	1357	47	2	2072	2	FAM13A	4	89711765	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41609	89711765	101442511	5853	14004											
FAM13A	10144	broad.mit.edu	37	chr4	89744257	89744257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagtggctaagctgggttGggggcatgaggctgcaccgc	17	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89744257	T	T	89744257	1	4	9	0	1	0	0	0	0	0	0	0	5498	1363	47	2		2	FAM13A	4	89744257	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32492	89744257	101410019	5854	14005											
FAM13A	10144	broad.mit.edu	37	chr4	89950666	89950666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctggaatgccattctcGgtgagcccctgccgttcaag	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89950666	T	T	89950666	2	4	9	1	0	0	0	0	0	0	0	1	5498	1103	39	1		1	FAM13A	4	89950666	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	206409	89950666	101203610	5855	14006											
GPRIN3	285513	broad.mit.edu	37	chr4	90168950	90168950	+	Missense_Mutation	SNP	G	T	T													ttcaatctaacacagaagacGgggcaggacggacgcagcag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90168950	T	T	90168950	3	4	9	1	0	0	0	0	1	0	0	0	6797	1116	39	1	22	1	GPRIN3	4	90168950	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	218284	90168950	100985326	5856	14007	85	2									
GPRIN3	285513	broad.mit.edu	37	chr4	90168960	90168960	+	Missense_Mutation	SNP	G	T	T													cacagaagacggggcaggacGgacgcagcagttggggcgtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90168960	T	T	90168960	3	4	9	1	0	0	0	0	1	0	0	0	6797	1116	39	1	32	1	GPRIN3	4	90168960	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	90168960	100985316	5857	14008	85	2									
GPRIN3	285513	broad.mit.edu	37	chr4	90170923	90170923	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccttcctgctgcagaactCggggctgatgctgcgggctg	14	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90170923	A	A	90170923	2	1	9	1	0	0	0	0	0	0	0	1	6797	871	31	3		3	GPRIN3	4	90170923	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1963	90170923	100983353	5858	14009											
MMRN1	22915	broad.mit.edu	37	chr4	90816377	90816377	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaatcaacactgcctccCtcagaaacaagtgcacctgc	5	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90816377	A	A	90816377	2	1	9	1	0	0	0	0	0	0	0	1	9764	668	24	2		2	MMRN1	4	90816377	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	645454	90816377	100337899	5859	14010											
MMRN1	22915	broad.mit.edu	37	chr4	90844456	90844456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattactatcatctctgaccCaattattgtcaatgctattt	3	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90844456	A	A	90844456	1	1	9	0	1	0	0	0	0	0	0	0	9764	609	21	2		2	MMRN1	4	90844456	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28079	90844456	100309820	5860	14011											
MMRN1	22915	broad.mit.edu	37	chr4	90857794	90857794	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttaacttgttgtatagatcGatcgttgcctggtagtctgg	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90857794	T	T	90857794	3	4	9	1	0	0	0	0	1	0	0	0	9764	1058	37	3	2985	3	MMRN1	4	90857794	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13338	90857794	100296482	5861	14012											
TMSL3	7117	broad.mit.edu	37	chr4	91760174	91760174	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcgatctcagccatatcGggtttgtcagacatggttgc	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91760174	T	T	91760174	2	4	9	1	0	0	0	0	0	0	0	1	16382	1103	39	1		1	TMSL3	4	91760174	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	902380	91760174	99394102	5862	14013											
SMARCAD1	56916	broad.mit.edu	37	chr4	95147389	95147389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtgaagatgtcgtttccCcaaattgctccaatacagtt	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95147389	A	A	95147389	3	1	9	1	0	0	0	0	1	0	0	0	14886	623	22	2	316	2	SMARCAD1	4	95147389	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3387215	95147389	96006887	5863	14014											
SMARCAD1	56916	broad.mit.edu	37	chr4	95170890	95170890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattgcaaaaggaatttcCcaattttgataaacaggtga	8	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95170890	A	A	95170890	3	1	9	1	0	0	0	0	1	0	0	0	14886	623	22	2	813	2	SMARCAD1	4	95170890	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23501	95170890	95983386	5864	14015											
SMARCAD1	56916	broad.mit.edu	37	chr4	95210632	95210632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgacctacaggtgatgaaGggagtatgccagcagatata	12	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95210632	T	T	95210632	3	4	9	1	0	0	0	0	1	0	0	0	14886	1000	35	2	3124	2	SMARCAD1	4	95210632	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39742	95210632	95943644	5865	14016											
BMPR1B	658	broad.mit.edu	37	chr4	96035878	96035878	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgatcttcagcacagacGgatattgtttcacgatgata	9	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96035878	T	T	96035878	4	4	9	1	0	0	0	0	0	1	0	0	1476	1117	39	1	157	1	BMPR1B	4	96035878	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	825246	96035878	95118398	5866	14017											
UNC5C	8633	broad.mit.edu	37	chr4	96106364	96106364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctataatgacatgcccCaaacccaaagcacgttattg	5	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96106364	A	A	96106364	1	1	9	0	1	0	0	0	0	0	0	0	17119	609	21	2		2	UNC5C	4	96106364	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	70486	96106364	95047912	5867	14018											
UNC5C	8633	broad.mit.edu	37	chr4	96137327	96137327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttcgtagactctcccttGgggaatggccccagcgggaa	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96137327	T	T	96137327	3	4	9	1	0	0	0	0	1	0	0	0	17119	1357	47	2	1142	2	UNC5C	4	96137327	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30963	96137327	95016949	5868	14019											
UNC5C	8633	broad.mit.edu	37	chr4	96140340	96140340	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacactttgattttcaggttGggcagtggatccagaattgg	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96140340	T	T	96140340	2	4	9	1	0	0	0	0	0	0	0	1	17119	1335	47	2		2	UNC5C	4	96140340	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3013	96140340	95013936	5869	14020											
UNC5C	8633	broad.mit.edu	37	chr4	96171772	96171772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatagtaatataaaaattcCgatcttcaacgggatcaatt	5	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96171772	A	A	96171772	3	1	9	1	0	0	0	0	1	0	0	0	17119	652	23	1	2202	1	UNC5C	4	96171772	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31432	96171772	94982504	5870	14021											
UNC5C	8633	broad.mit.edu	37	chr4	96469978	96469978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagtcccagtccgcagcGggccgctgtcgcccgcagac	12	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96469978	T	T	96469978	3	4	9	1	0	0	0	0	1	0	0	0	17119	1116	39	1	2828	1	UNC5C	4	96469978	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	298206	96469978	94684298	5871	14022											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99300253	99300253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcagtataacagatccCgccaatgagaagctcttgac	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99300253	A	A	99300253	2	1	9	1	0	0	0	0	0	0	0	1	13147	639	23	1		1	RAP1GDS1	4	99300253	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2830275	99300253	91854023	5872	14023											
TSPAN5	10098	broad.mit.edu	37	chr4	99407914	99407914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaggaaagtgttttccCgtagcgctccaatgcaccct	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99407914	A	A	99407914	3	1	9	1	0	0	0	0	1	0	0	0	16775	652	23	1	576	1	TSPAN5	4	99407914	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107661	99407914	91746362	5873	14024											
EIF4E	1977	broad.mit.edu	37	chr4	99823074	99823074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctgggttagcaacctcCtgattagattccgttttctc	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99823074	A	A	99823074	3	1	9	1	0	0	0	0	1	0	0	0	5070	680	24	2	696	2	EIF4E	4	99823074	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	415160	99823074	91331202	5874	14025											
EIF4E	1977	broad.mit.edu	37	chr4	99823086	99823086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacctcctgattagattcCgttttctcctcttctgtagt	6	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99823086	A	A	99823086	2	1	9	1	0	0	0	0	0	0	0	1	5070	639	23	1		1	EIF4E	4	99823086	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	99823086	91331190	5875	14026											
METAP1	23173	broad.mit.edu	37	chr4	99969912	99969912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttcggtacagagaattGggaaacattatccagaagca	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99969912	T	T	99969912	3	4	9	1	0	0	0	0	1	0	0	0	9579	1339	47	2	850	2	METAP1	4	99969912	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	146826	99969912	91184364	5876	14027											
ADH5	128	broad.mit.edu	37	chr4	99993813	99993813	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaacttttatctttttGgacatatattcagacaccaa	3	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99993813	T	T	99993813	2	4	9	1	0	0	0	0	0	0	0	1	311	1335	47	2		2	ADH5	4	99993813	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23901	99993813	91160463	5877	14028											
ADH5	128	broad.mit.edu	37	chr4	99993838	99993838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattcagacaccaactttGggacactttctacactcttc	4	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99993838	T	T	99993838	3	4	9	1	0	0	0	0	1	0	0	0	311	1348	47	2	146	2	ADH5	4	99993838	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	99993838	91160438	5878	14029											
ADH5	128	broad.mit.edu	37	chr4	99996169	99996169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccacgacgctgacgcccCagcccttgtgacatgcctca	8	18	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99996169	A	A	99996169	3	1	9	1	0	0	0	0	1	0	0	0	311	595	21	2	279	2	ADH5	4	99996169	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2331	99996169	91158107	5879	14030											
ADH5	128	broad.mit.edu	37	chr4	100009831	100009831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggccctccgctcaacGggccctacctcgttcgccat	9	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100009831	T	T	100009831	1	4	9	0	1	0	0	0	0	0	0	0	311	1131	39	1		1	ADH5	4	100009831	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13662	100009831	91144445	5880	14031											
ADH6	130	broad.mit.edu	37	chr4	100129922	100129922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttctttaagtcctgaGggttgaggcactcagtagca	13	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100129922	T	T	100129922	3	4	9	1	0	0	0	0	1	0	0	0	312	1000	35	2	416	2	ADH6	4	100129922	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	120091	100129922	91024354	5881	14032											
ADH6	130	broad.mit.edu	37	chr4	100131404	100131404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgatatattgattttccCttgcaggtaaacctgctggt	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100131404	A	A	100131404	3	1	9	1	0	0	0	0	1	0	0	0	312	680	24	2	749	2	ADH6	4	100131404	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1482	100131404	91022872	5882	14033											
ADH1A	124	broad.mit.edu	37	chr4	100201317	100201317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataccaccaagaatagctccCttccaggtacgtccagtcag	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100201317	A	A	100201317	3	1	9	1	0	0	0	0	1	0	0	0	307	680	24	2	191	2	ADH1A	4	100201317	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69913	100201317	90952959	5883	14034											
ADH1A	124	broad.mit.edu	37	chr4	100203503	100203503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcatgtcatggtacatacCatggtgtcaagccgaccgat	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100203503	A	A	100203503	3	1	9	1	0	0	0	0	1	0	0	0	307	608	21	2	315	2	ADH1A	4	100203503	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2186	100203503	90950773	5884	14035											
ADH1A	124	broad.mit.edu	37	chr4	100203600	100203600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttcttgtagtcttgaGggttgatgcattcagtggca	14	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100203600	T	T	100203600	3	4	9	1	0	0	0	0	1	0	0	0	307	1000	35	2	412	2	ADH1A	4	100203600	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97	100203600	90950676	5885	14036											
ADH1A	124	broad.mit.edu	37	chr4	100203665	100203665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccttgttgatgtccacCgcaatgattctggctgcccc	9	13	1	2	rs61732104	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100203665	A	A	100203665	2	1	9	1	0	0	0	0	0	0	0	1	307	639	23	1		1	ADH1A	4	100203665	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	100203665	90950611	5886	14037											
ADH1A	124	broad.mit.edu	37	chr4	100208794	100208794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagggtttctttaactccCatagcacagctgctttgcat	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100208794	A	A	100208794	3	1	9	1	0	0	0	0	1	0	0	0	307	595	21	2	1112	2	ADH1A	4	100208794	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5129	100208794	90945482	5887	14038											
ADH1B	125	broad.mit.edu	37	chr4	100231980	100231980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcaaaaggtaaaacatGggttattaacgcatccagtg	8	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100231980	T	T	100231980	3	4	9	1	0	0	0	0	1	0	0	0	308	1348	47	2	90	2	ADH1B	4	100231980	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23186	100231980	90922296	5888	14039											
ADH1B	125	broad.mit.edu	37	chr4	100232036	100232036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatcagccacaagttttGggataccttctttactctta	5	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100232036	T	T	100232036	3	4	9	1	0	0	0	0	1	0	0	0	308	1348	47	2	146	2	ADH1B	4	100232036	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	100232036	90922240	5889	14040											
ADH1C	126	broad.mit.edu	37	chr4	100264071	100264071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgatgcattcagtggcacCcaactctttagcctttgcaa	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100264071	A	A	100264071	3	1	9	1	0	0	0	0	1	0	0	0	309	623	22	2	434	2	ADH1C	4	100264071	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32035	100264071	90890205	5890	14041											
ADH1C	126	broad.mit.edu	37	chr4	100264167	100264167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccataacaacagataggcCgacccctcccaggccaaaca	7	17	0	1	rs74561381		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100264167	A	A	100264167	3	1	9	1	0	0	0	0	1	0	0	0	309	652	23	1	530	1	ADH1C	4	100264167	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	96	100264167	90890109	5891	14042											
ADH7	131	broad.mit.edu	37	chr4	100349052	100349052	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcatccaccactgtgtactCggtaaatgtactggtgttca	8	10	2	0	rs146508025		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349052	A	A	100349052	4	1	9	1	0	0	0	0	0	1	0	0	313	893	31	3	702	3	ADH7	4	100349052	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84885	100349052	90805224	5892	14043											
ADH7	131	broad.mit.edu	37	chr4	100356328	100356328	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttctaagtatcagcctcaCatcattaggtcatgatgagg	9	8	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100356328	T	T	100356328	1	4	9	0	1	0	0	0	0	0	0	0	313	493	17	4		4	ADH7	4	100356328	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7276	100356328	90797948	5893	14044											
MTTP	4547	broad.mit.edu	37	chr4	100532497	100532497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtcatcaggtagtcccCgttcggcatctacttacagc	10	12	3	0	rs148696330		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100532497	A	A	100532497	3	1	9	1	0	0	0	0	1	0	0	0	10058	652	23	1	1930	1	MTTP	4	100532497	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	176169	100532497	90621779	5894	14045											
MTTP	4547	broad.mit.edu	37	chr4	100540242	100540242	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatcgtgagtctaaaaccCgagtgaaaaataggtaagtg	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100540242	A	A	100540242	2	1	9	1	0	0	0	0	0	0	0	1	10058	644	23	1		1	MTTP	4	100540242	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7745	100540242	90614034	5895	14046											
MTTP	4547	broad.mit.edu	37	chr4	100544042	100544042	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacttgaatttgtctcccCgaaagggacacaatgtggca	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100544042	A	A	100544042	1	1	9	0	1	0	0	0	0	0	0	0	10058	667	23	1		1	MTTP	4	100544042	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3800	100544042	90610234	5896	14047											
DAPP1	27071	broad.mit.edu	37	chr4	100787761	100787761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctctctgtatatctccCgaggagaagactgagtgagt	11	9	3	4	rs142005334	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100787761	A	A	100787761	1	1	9	0	1	0	0	0	0	0	0	0	4272	667	23	1		1	DAPP1	4	100787761	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	243719	100787761	90366515	5897	14048											
DNAJB14	79982	broad.mit.edu	37	chr4	100851730	100851730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatggttttcggcaatgaGggctatttccagccgtgctt	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100851730	T	T	100851730	3	4	9	1	0	0	0	0	1	0	0	0	4659	1000	35	2	985	2	DNAJB14	4	100851730	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63969	100851730	90302546	5898	14049											
EMCN	51705	broad.mit.edu	37	chr4	101438976	101438976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctactagtgatttccaatcCgtaccaccagaggaataaga	7	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101438976	A	A	101438976	1	1	9	0	1	0	0	0	0	0	0	0	5128	667	23	1		1	EMCN	4	101438976	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	587246	101438976	89715300	5899	14050											
BANK1	55024	broad.mit.edu	37	chr4	102951371	102951371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcctgcccccacacccCgacccacaagtatacctcca	4	22	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102951371	A	A	102951371	2	1	9	1	0	0	0	0	0	0	0	1	1314	644	23	1		1	BANK1	4	102951371	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1512395	102951371	88202905	5900	14051											
SLC39A8	64116	broad.mit.edu	37	chr4	103228693	103228693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataagatttctttatcagtGgagtcaaaatcaatccgagg	8	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103228693	T	T	103228693	3	4	9	1	0	0	0	0	1	0	0	0	14738	1348	47	2	1031	2	SLC39A8	4	103228693	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	277322	103228693	87925583	5901	14052											
UBE2D3	7323	broad.mit.edu	37	chr4	103730994	103730994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattgtgctggagggtcacGggccaaatcactaagttcct	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103730994	T	T	103730994	3	4	9	1	0	0	0	0	1	0	0	0	16976	1116	39	1	477	1	UBE2D3	4	103730994	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	502301	103730994	87423282	5902	14053											
NHEDC1	150159	broad.mit.edu	37	chr4	103806451	103806451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagttcgtccattcctccCgaagaagaaacaacagaagg	9	11	0	3	rs142253163		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103806451	A	A	103806451	3	1	9	1	0	0	0	0	1	0	0	0	10495	652	23	1	64	1	NHEDC1	4	103806451	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75457	103806451	87347825	5903	14054											
NHEDC1	150159	broad.mit.edu	37	chr4	103822372	103822372	+	Nonsense_Mutation	SNP	C	A	A													aatgcccataagtagagctcCatttggagctgtgatcaaga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103822372	A	A	103822372	4	1	9	1	0	0	0	0	0	1	0	0	10495	603	21	2	201	2	NHEDC1	4	103822372	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15921	103822372	87331904	5904	14055	86	2									
NHEDC1	150159	broad.mit.edu	37	chr4	103822377	103822377	+	Missense_Mutation	SNP	G	T	T													ccataagtagagctccatttGgagctgtgatcaagatggct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103822377	T	T	103822377	3	4	9	1	0	0	0	0	1	0	0	0	10495	1348	47	2	206	2	NHEDC1	4	103822377	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5	103822377	87331899	5905	14056	86	2									
BDH2	56898	broad.mit.edu	37	chr4	104004120	104004120	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatattcagcttggttactCactttcactgaaaaagaaat	7	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104004120	A	A	104004120	1	1	9	0	1	0	0	0	0	0	0	0	1396	841	29	3		3	BDH2	4	104004120	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	181743	104004120	87150156	5906	14057											
CENPE	1062	broad.mit.edu	37	chr4	104044085	104044085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattcttattgtcttgtgtGgtaggattaacctgggcacc	12	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104044085	T	T	104044085	2	4	9	1	0	0	0	0	0	0	0	1	3260	1335	47	2		2	CENPE	4	104044085	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39965	104044085	87110191	5907	14058											
CENPE	1062	broad.mit.edu	37	chr4	104059541	104059541	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttttctctcaggctttcCgtaaggtgctgttgtccatc	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104059541	A	A	104059541	2	1	9	1	0	0	0	0	0	0	0	1	3260	639	23	1		1	CENPE	4	104059541	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15456	104059541	87094735	5908	14059											
CENPE	1062	broad.mit.edu	37	chr4	104070440	104070440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgtttccatatgttcCaatgtcaattctttgttctt	4	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104070440	A	A	104070440	3	1	9	1	0	0	0	0	1	0	0	0	3260	593	21	2	4675	2	CENPE	4	104070440	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10899	104070440	87083836	5909	14060											
CENPE	1062	broad.mit.edu	37	chr4	104101492	104101492	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcctgttgcaacgtgagGgaagaagaggtcaccagcat	12	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104101492	T	T	104101492	2	4	9	1	0	0	0	0	0	0	0	1	3260	1219	43	2		2	CENPE	4	104101492	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31052	104101492	87052784	5910	14061											
CXXC4	80319	broad.mit.edu	37	chr4	105393493	105393493	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctttaaaagaaccatcGgaatgcttcagcgctgggaa	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105393493	T	T	105393493	2	4	9	1	0	0	0	0	0	0	0	1	4131	1124	39	1		1	CXXC4	4	105393493	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1292001	105393493	85760783	5911	14062											
INTS12	57117	broad.mit.edu	37	chr4	106614593	106614593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgtgtttctggtttctcCaatctaggtttctttggaat	9	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106614593	A	A	106614593	3	1	9	1	0	0	0	0	1	0	0	0	7847	593	21	2	1044	2	INTS12	4	106614593	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1221100	106614593	84539683	5912	14063											
GSTCD	79807	broad.mit.edu	37	chr4	106744323	106744323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttatttggcaagattgtGgtttcagaatgaggaaaagc	11	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106744323	T	T	106744323	1	4	9	0	1	0	0	0	0	0	0	0	6901	1363	47	2		2	GSTCD	4	106744323	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	129730	106744323	84409953	5913	14064											
TBCK	93627	broad.mit.edu	37	chr4	107114877	107114877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgggaaagaggaattccCaagtagtaaggtatcccaga	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107114877	A	A	107114877	3	1	9	1	0	0	0	0	1	0	0	0	15758	594	21	2	753	2	TBCK	4	107114877	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	370554	107114877	84039399	5914	14065											
TBCK	93627	broad.mit.edu	37	chr4	107154119	107154119	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaatacacaagatcaggatGagacactacccaggctttta	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107154119	T	T	107154119	3	4	9	1	0	0	0	0	1	0	0	0	15758	1290	45	3	1106	3	TBCK	4	107154119	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39242	107154119	84000157	5915	14066											
PAPSS1	9061	broad.mit.edu	37	chr4	108535394	108535394	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcaaaggtggagtgactGggttaacagcctaagctttc	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108535394	T	T	108535394	1	4	9	0	1	0	0	0	0	0	0	0	11528	1363	47	2		2	PAPSS1	4	108535394	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1381275	108535394	82618882	5916	14067											
PAPSS1	9061	broad.mit.edu	37	chr4	108608175	108608175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctaagcaaagtgaaactGggaagaaaatattactgacc	8	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108608175	T	T	108608175	1	4	9	0	1	0	0	0	0	0	0	0	11528	1363	47	2		2	PAPSS1	4	108608175	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	72781	108608175	82546101	5917	14068											
SGMS2	166929	broad.mit.edu	37	chr4	108829777	108829777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggctgctgagtgctgccGggatcatctgcattcttgta	13	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108829777	T	T	108829777	3	4	9	1	0	0	0	0	1	0	0	0	14328	1116	39	1	798	1	SGMS2	4	108829777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	221602	108829777	82324499	5918	14069											
CYP2U1	113612	broad.mit.edu	37	chr4	108866316	108866316	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatcatcagcaatgcCgtctctaacatcatttgctc	4	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108866316	A	A	108866316	2	1	9	1	0	0	0	0	0	0	0	1	4208	639	23	1		1	CYP2U1	4	108866316	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36539	108866316	82287960	5919	14070											
CYP2U1	113612	broad.mit.edu	37	chr4	108866751	108866751	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatatgtcgctgaacccCgatgtacaaggtaattaata	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108866751	A	A	108866751	2	1	9	1	0	0	0	0	0	0	0	1	4208	639	23	1		1	CYP2U1	4	108866751	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	435	108866751	82287525	5920	14071											
HADH	3033	broad.mit.edu	37	chr4	108930962	108930962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttggtagaccagacagaGgacatcctggcaaaatccaa	11	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108930962	T	T	108930962	3	4	9	1	0	0	0	0	1	0	0	0	7008	991	35	2	186	2	HADH	4	108930962	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64211	108930962	82223314	5921	14072											
HADH	3033	broad.mit.edu	37	chr4	108954418	108954418	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcttctagattatgtcGgactggatactacgaagttc	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108954418	T	T	108954418	4	4	9	1	0	0	0	0	0	1	0	0	7008	1117	39	1	877	1	HADH	4	108954418	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23456	108954418	82199858	5922	14073											
LEF1	51176	broad.mit.edu	37	chr4	108999310	108999310	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgatatgggattaaattGgggcagattttcatgaagca	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108999310	T	T	108999310	1	4	9	0	1	0	0	0	0	0	0	0	8786	1363	47	2		2	LEF1	4	108999310	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	44892	108999310	82154966	5923	14074											
LEF1	51176	broad.mit.edu	37	chr4	109084801	109084801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttggcatcattatgtaccCggaataactcgagtaggagg	11	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109084801	A	A	109084801	3	1	9	1	0	0	0	0	1	0	0	0	8786	652	23	1	982	1	LEF1	4	109084801	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85491	109084801	82069475	5924	14075											
OSTC	58505	broad.mit.edu	37	chr4	109576758	109576758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgaacctccaagtgtcGgttctatgactgatgaacat	9	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109576758	T	T	109576758	3	4	9	1	0	0	0	0	1	0	0	0	11390	1116	39	1	184	1	OSTC	4	109576758	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	491957	109576758	81577518	5925	14076											
AGXT2L1	64850	broad.mit.edu	37	chr4	109669075	109669075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtagttttaatagagacGgggtctcaccatgttgccca	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109669075	T	T	109669075	1	4	9	0	1	0	0	0	0	0	0	0	406	1131	39	1		1	AGXT2L1	4	109669075	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	92317	109669075	81485201	5926	14077											
AGXT2L1	64850	broad.mit.edu	37	chr4	109675707	109675707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttcatctagatgaaagCattggctggattatcattaa	9	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109675707	A	A	109675707	1	1	9	0	1	0	0	0	0	0	0	0	406	725	25	3		3	AGXT2L1	4	109675707	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6632	109675707	81478569	5927	14078											
AGXT2L1	64850	broad.mit.edu	37	chr4	109675856	109675856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaaggatgataggtgacCatggtaagcactgaagagac	12	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109675856	A	A	109675856	3	1	9	1	0	0	0	0	1	0	0	0	406	594	21	2	1114	2	AGXT2L1	4	109675856	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	109675856	81478420	5928	14079											
COL25A1	84570	broad.mit.edu	37	chr4	109783702	109783702	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgattcaccttgtttcccCtattacagcagaataagagg	7	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109783702	A	A	109783702	5	1	9	1	0	0	0	0	0	0	1	0	3716	695	24	2	964	2	COL25A1	4	109783702	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	107846	109783702	81370574	5929	14080											
SEC24B	10427	broad.mit.edu	37	chr4	110384559	110384559	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatatgggcaaatgtttacCtcacagaatgctccgactgt	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110384559	A	A	110384559	2	1	9	1	0	0	0	0	0	0	0	1	14108	668	24	2		2	SEC24B	4	110384559	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	600857	110384559	80769717	5930	14081											
SEC24B	10427	broad.mit.edu	37	chr4	110415981	110415981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagtacagcccagtaaccCggtatattctggattccagc	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110415981	A	A	110415981	3	1	9	1	0	0	0	0	1	0	0	0	14108	652	23	1	1479	1	SEC24B	4	110415981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31422	110415981	80738295	5931	14082											
SEC24B	10427	broad.mit.edu	37	chr4	110447420	110447420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacggtaacttctttgtcCgttctactgatttgttatcc	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110447420	A	A	110447420	3	1	9	1	0	0	0	0	1	0	0	0	14108	652	23	1	2896	1	SEC24B	4	110447420	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31439	110447420	80706856	5932	14083											
SEC24B	10427	broad.mit.edu	37	chr4	110448545	110448545	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactagcagatgtatatgcGggagtggatgtacaagctgc	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110448545	T	T	110448545	2	4	9	1	0	0	0	0	0	0	0	1	14108	1103	39	1		1	SEC24B	4	110448545	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1125	110448545	80705731	5933	14084											
CFI	3426	broad.mit.edu	37	chr4	110662178	110662178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccccaactcacaacaccCcagacataagtcacattgtt	3	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110662178	A	A	110662178	3	1	9	1	0	0	0	0	1	0	0	0	3319	624	22	2	132	2	CFI	4	110662178	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	213633	110662178	80492098	5934	14085											
CFI	3426	broad.mit.edu	37	chr4	110670478	110670478	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgccatgggaggtctccCtgtaaaagacatttgtgtgg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110670478	A	A	110670478	5	1	9	1	0	0	0	0	0	0	1	0	3319	695	24	2	723	2	CFI	4	110670478	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	8300	110670478	80483798	5935	14086											
GAR1	54433	broad.mit.edu	37	chr4	110743600	110743600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtggtggcaggggaggccGaggaggaggaagaggaggag	25	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110743600	T	T	110743600	3	4	9	1	0	0	0	0	1	0	0	0	6302	1058	37	3	541	3	GAR1	4	110743600	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73122	110743600	80410676	5936	14087											
RRH	10692	broad.mit.edu	37	chr4	110756683	110756683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactaatggccactcaatatAtatatacgctaaaatataaa	4	7	1	0	rs111288679	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110756683	G	G	110756683	1	3	9	0	1	0	0	0	0	0	0	0	13791	464	16	5		5	RRH	4	110756683	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	13083	110756683	80397593	5937	14088											
LRIT3	345193	broad.mit.edu	37	chr4	110791018	110791018	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagtgggatgtccagccGggatctggaagatctacatc	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110791018	T	T	110791018	2	4	9	1	0	0	0	0	0	0	0	1	9036	1103	39	1		1	LRIT3	4	110791018	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34335	110791018	80363258	5938	14089											
EGF	1950	broad.mit.edu	37	chr4	110884342	110884342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaggttgttcctcaccCgataatggtggatgtagcca	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110884342	A	A	110884342	2	1	9	1	0	0	0	0	0	0	0	1	5002	639	23	1		1	EGF	4	110884342	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	93324	110884342	80269934	5939	14090											
EGF	1950	broad.mit.edu	37	chr4	110885667	110885667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgggaatggtttatgccCtagatcatgaccctgtggaa	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110885667	A	A	110885667	3	1	9	1	0	0	0	0	1	0	0	0	5002	680	24	2	1587	2	EGF	4	110885667	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1325	110885667	80268609	5940	14091											
EGF	1950	broad.mit.edu	37	chr4	110897235	110897235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccctccaaggccttggcCgtctggttatagccagctct	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110897235	A	A	110897235	3	1	9	1	0	0	0	0	1	0	0	0	5002	652	23	1	1947	1	EGF	4	110897235	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11568	110897235	80257041	5941	14092											
EGF	1950	broad.mit.edu	37	chr4	110902008	110902008	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccctgcttatatcaaaacGgaggctgtgaacatatttgc	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110902008	T	T	110902008	4	4	9	1	0	0	0	0	0	1	0	0	5002	1117	39	1	2306	1	EGF	4	110902008	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4773	110902008	80252268	5942	14093											
ENPEP	2028	broad.mit.edu	37	chr4	111436532	111436532	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttttatccccattgtaGggatcttctattttgagaat	7	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111436532	T	T	111436532	5	4	9	1	0	0	0	0	0	0	1	0	5170	1014	35	2	1473	2	ENPEP	4	111436532	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	534524	111436532	79717744	5943	14094											
PITX2	5308	broad.mit.edu	37	chr4	111553522	111553522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgccaggatgctgccgcGggaagaacttgctgctggct	16	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111553522	T	T	111553522	3	4	9	1	0	0	0	0	1	0	0	0	12050	1116	39	1	1013	1	PITX2	4	111553522	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	116990	111553522	79600754	5944	14095											
PITX2	5308	broad.mit.edu	37	chr4	111554125	111554125	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctaattgcacacacgcCgacaccagtttgcggcagtt	8	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111554125	A	A	111554125	2	1	9	1	0	0	0	0	0	0	0	1	12050	639	23	1		1	PITX2	4	111554125	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	603	111554125	79600151	5945	14096											
PITX2	5308	broad.mit.edu	37	chr4	111554159	111554159	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagttggtctccattcccCgttatctgcaaaacagaaga	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111554159	A	A	111554159	1	1	9	0	1	0	0	0	0	0	0	0	12050	667	23	1		1	PITX2	4	111554159	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	111554159	79600117	5946	14097											
C4orf32	132720	broad.mit.edu	37	chr4	113092393	113092393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtaaacattcctaaaaccCactggactttctgtacgaag	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113092393	A	A	113092393	1	1	9	0	1	0	0	0	0	0	0	0	2285	609	21	2		2	C4orf32	4	113092393	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1538234	113092393	78061883	5947	14098											
AP1AR	55435	broad.mit.edu	37	chr4	113189357	113189357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaggaagacattctacGggcagcacttaagtatagca	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113189357	T	T	113189357	3	4	9	1	0	0	0	0	1	0	0	0	732	1116	39	1	739	1	AP1AR	4	113189357	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96964	113189357	77964919	5948	14099											
TIFA	92610	broad.mit.edu	37	chr4	113199488	113199488	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttattgactgaaatattcCacactgcaactggccaggat	7	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113199488	A	A	113199488	4	1	9	1	0	0	0	0	0	1	0	0	16017	603	21	2	473	2	TIFA	4	113199488	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10131	113199488	77954788	5949	14100											
ALPK1	80216	broad.mit.edu	37	chr4	113298909	113298909	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgatcaccctagacccagGgacacccaattcatcgtaat	6	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113298909	T	T	113298909	1	4	9	0	1	0	0	0	0	0	0	0	544	1247	43	2		2	ALPK1	4	113298909	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	99421	113298909	77855367	5950	14101											
ALPK1	80216	broad.mit.edu	37	chr4	113346886	113346886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtctgtatacagatcagaGggcagattctgcaaaagctg	12	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113346886	T	T	113346886	3	4	9	1	0	0	0	0	1	0	0	0	544	1000	35	2	619	2	ALPK1	4	113346886	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47977	113346886	77807390	5951	14102											
C4orf21	55345	broad.mit.edu	37	chr4	113479457	113479457	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtaactctttcctgctcCaaacacacctaattatttta	2	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113479457	A	A	113479457	4	1	9	1	0	0	0	0	0	1	0	0	2277	603	21	2	1381	2	C4orf21	4	113479457	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132571	113479457	77674819	5952	14103											
C4orf21	55345	broad.mit.edu	37	chr4	113482051	113482051	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctaacttcaatgttgctcCtaggctgagtagttcaaatt	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113482051	A	A	113482051	4	1	9	1	0	0	0	0	0	1	0	0	2277	690	24	2	1556	2	C4orf21	4	113482051	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2594	113482051	77672225	5953	14104											
C4orf21	55345	broad.mit.edu	37	chr4	113508734	113508734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttatcaactctgtttGgagtagccacgttgcattgg	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113508734	T	T	113508734	3	4	9	1	0	0	0	0	1	0	0	0	2277	1348	47	2	2903	2	C4orf21	4	113508734	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26683	113508734	77645542	5954	14105											
C4orf21	55345	broad.mit.edu	37	chr4	113527168	113527168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcacaaattttaccttaGggtcacaggtttttctctct	5	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113527168	T	T	113527168	3	4	9	1	0	0	0	0	1	0	0	0	2277	1000	35	2	3596	2	C4orf21	4	113527168	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18434	113527168	77627108	5955	14106											
C4orf21	55345	broad.mit.edu	37	chr4	113527236	113527236	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtctcttctttacttccCgaggaagagaactaggataa	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113527236	A	A	113527236	2	1	9	1	0	0	0	0	0	0	0	1	2277	639	23	1		1	C4orf21	4	113527236	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	113527236	77627040	5956	14107											
LARP7	51574	broad.mit.edu	37	chr4	113568624	113568624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgaagatgcagaatccCtagctccccgatcaaaagta	8	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113568624	A	A	113568624	3	1	9	1	0	0	0	0	1	0	0	0	8705	680	24	2	938	2	LARP7	4	113568624	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41388	113568624	77585652	5957	14108											
ANK2	287	broad.mit.edu	37	chr4	114176894	114176894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttaatgtgcagaatGggctgtctccactacacatg	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114176894	T	T	114176894	3	4	9	1	0	0	0	0	1	0	0	0	621	1348	47	2	1061	2	ANK2	4	114176894	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	608270	114176894	76977382	5958	14109											
ANK2	287	broad.mit.edu	37	chr4	114177035	114177035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgcactgtggccactacCgtgtaaccaaactcctttta	7	14	0	0	rs143043717		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114177035	A	A	114177035	3	1	9	1	0	0	0	0	1	0	0	0	621	652	23	1	1202	1	ANK2	4	114177035	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	141	114177035	76977241	5959	14110											
ANK2	287	broad.mit.edu	37	chr4	114263082	114263082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgtggaggtactgtacCaaaaataataataataattt	9	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114263082	A	A	114263082	1	1	9	0	1	0	0	0	0	0	0	0	621	609	21	2		2	ANK2	4	114263082	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	86047	114263082	76891194	5960	14111											
ANK2	287	broad.mit.edu	37	chr4	114275075	114275075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccattggttccataaaGgacaaagtaaaggcccttca	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114275075	T	T	114275075	3	4	9	1	0	0	0	0	1	0	0	0	621	991	35	2	5516	2	ANK2	4	114275075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11993	114275075	76879201	5961	14112											
ANK2	287	broad.mit.edu	37	chr4	114277305	114277305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcggtcccggctactcCgagaccctgatggcagtgct	13	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114277305	A	A	114277305	2	1	9	1	0	0	0	0	0	0	0	1	621	644	23	1		1	ANK2	4	114277305	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2230	114277305	76876971	5962	14113											
ANK2	287	broad.mit.edu	37	chr4	114277701	114277701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaaaacatacaggcagtGgggaggatgaaagtggtgtc	14	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114277701	T	T	114277701	3	4	9	1	0	0	0	0	1	0	0	0	621	1348	47	2	8142	2	ANK2	4	114277701	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	396	114277701	76876575	5963	14114											
ANK2	287	broad.mit.edu	37	chr4	114280037	114280037	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagagcagagagagggcCgaggaacttgagttagaatc	15	6	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114280037	A	A	114280037	2	1	9	1	0	0	0	0	0	0	0	1	621	639	23	1		1	ANK2	4	114280037	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2336	114280037	76874239	5964	14115											
ARSJ	79642	broad.mit.edu	37	chr4	114823987	114823987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatgcaaaatatctactcGgggtgagcgaagaccctcac	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114823987	T	T	114823987	2	4	9	1	0	0	0	0	0	0	0	1	999	1124	39	1		1	ARSJ	4	114823987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	543950	114823987	76330289	5965	14116											
ARSJ	79642	broad.mit.edu	37	chr4	114824466	114824466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaaatataggctttgtgGggttatgggaagctaagatt	12	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114824466	T	T	114824466	3	4	9	1	0	0	0	0	1	0	0	0	999	1232	43	2	1039	2	ARSJ	4	114824466	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	479	114824466	76329810	5966	14117											
ARSJ	79642	broad.mit.edu	37	chr4	114824584	114824584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcatagccacacatccCaggactgtcacatttgtagt	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114824584	A	A	114824584	3	1	9	1	0	0	0	0	1	0	0	0	999	594	21	2	1157	2	ARSJ	4	114824584	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118	114824584	76329692	5967	14118											
ARSJ	79642	broad.mit.edu	37	chr4	114824619	114824619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtgtgtatagtaatccCcacttcccaaaagggaacca	8	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114824619	A	A	114824619	3	1	9	1	0	0	0	0	1	0	0	0	999	623	22	2	1192	2	ARSJ	4	114824619	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	114824619	76329657	5968	14119											
TRAM1L1	133022	broad.mit.edu	37	chr4	118005505	118005505	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtttccactcccactcCgttttctgttctttttttag	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118005505	A	A	118005505	4	1	9	1	0	0	0	0	0	1	0	0	16576	661	23	1	68	1	TRAM1L1	4	118005505	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3180886	118005505	73148771	5969	14120											
NDST3	9348	broad.mit.edu	37	chr4	119059259	119059259	+	Silent	SNP	G	T	T													gctgtggcccctcaccattcGggcgtctaccctgtacatgt					rs142162150		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119059259	T	T	119059259	2	4	9	1	0	0	0	0	0	0	0	1	10352	1103	39	1		1	NDST3	4	119059259	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1053754	119059259	72095017	5970	14121	87	2									
NDST3	9348	broad.mit.edu	37	chr4	119059263	119059263	+	Missense_Mutation	SNP	G	A	A													tggcccctcaccattcgggcGtctaccctgtacatgttcag					rs150758016	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119059263	A	A	119059263	3	1	9	1	0	0	0	0	1	0	0	0	10352	1145	40	4	1293	4	NDST3	4	119059263	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	119059263	72095013	5971	14122	87	2									
NDST3	9348	broad.mit.edu	37	chr4	119148034	119148034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctctatgttcttctccCatttagaatccttgcgatga	5	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119148034	A	A	119148034	1	1	9	0	1	0	0	0	0	0	0	0	10352	609	21	2		2	NDST3	4	119148034	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88771	119148034	72006242	5972	14123											
PRSS12	8492	broad.mit.edu	37	chr4	119204017	119204017	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgttatgtaacagttGgatgctgttttctgtggcct	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119204017	T	T	119204017	2	4	9	1	0	0	0	0	0	0	0	1	12721	1335	47	2		2	PRSS12	4	119204017	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55983	119204017	71950259	5973	14124											
METTL14	57721	broad.mit.edu	37	chr4	119609095	119609095	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttgggagctgaaagtgcCgacagcattggtgccgtgtt	15	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119609095	A	A	119609095	2	1	9	1	0	0	0	0	0	0	0	1	9591	639	23	1		1	METTL14	4	119609095	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	405078	119609095	71545181	5974	14125											
MYOZ2	51778	broad.mit.edu	37	chr4	120107271	120107271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttaataggactcctaaGggatggatatctgagaatat	9	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120107271	T	T	120107271	3	4	9	1	0	0	0	0	1	0	0	0	10190	991	35	2	729	2	MYOZ2	4	120107271	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	498176	120107271	71047005	5975	14126											
USP53	54532	broad.mit.edu	37	chr4	120166481	120166481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttttccttaacatctccCtgttttttaggttttatggc	5	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120166481	A	A	120166481	1	1	9	0	1	0	0	0	0	0	0	0	17211	696	24	2		2	USP53	4	120166481	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	59210	120166481	70987795	5976	14127											
USP53	54532	broad.mit.edu	37	chr4	120169947	120169947	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgagaaaaagcacttccCtcagataacataaggcatgc	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120169947	A	A	120169947	2	1	9	1	0	0	0	0	0	0	0	1	17211	668	24	2		2	USP53	4	120169947	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3466	120169947	70984329	5977	14128											
FABP2	2169	broad.mit.edu	37	chr4	120240719	120240720	+	Missense_Mutation	DNP	CG	AT	AT													gttcatcacctataatttctCggacagtattcagttcgttt					rs142649876	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	120240720	AT	AT	120240719	3	1	9	1	0	0	0	0	1	0	0	0	5403	884	31	3	86	3	FABP2	4	120240719	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	70772	120240719	70913557	5978	14129											
PDE5A	8654	broad.mit.edu	37	chr4	120426969	120426969	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatagtgagaaaattaactGggtaaaaaacttcagcttta	7	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120426969	C	C	120426969	1	2	9	0	1	0	0	0	0	0	0	0	11738	1363	47	4		4	PDE5A	4	120426969	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	186250	120426969	70727307	5979	14130											
PDE5A	8654	broad.mit.edu	37	chr4	120460115	120460115	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaagaggataattacCgctaacgactgtagctctct	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120460115	A	A	120460115	2	1	9	1	0	0	0	0	0	0	0	1	11738	666	23	1		1	PDE5A	4	120460115	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33146	120460115	70694161	5980	14131											
MAD2L1	4085	broad.mit.edu	37	chr4	120981391	120981391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtggtcccgactcttccCatttttcaggtacaaccaaa	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120981391	A	A	120981391	3	1	9	1	0	0	0	0	1	0	0	0	9236	595	21	2	121	2	MAD2L1	4	120981391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	521276	120981391	70172885	5981	14132											
PRDM5	11107	broad.mit.edu	37	chr4	121742300	121742300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctacaacttttcttctccCagatcaccaattaaagatgc	3	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121742300	A	A	121742300	1	1	9	0	1	0	0	0	0	0	0	0	12566	609	21	2		2	PRDM5	4	121742300	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	760909	121742300	69411976	5982	14133											
PRDM5	11107	broad.mit.edu	37	chr4	121774660	121774660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgtgggttggtagcatcCaaaatgtacaaaacttctcc	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121774660	A	A	121774660	3	1	9	1	0	0	0	0	1	0	0	0	12566	593	21	2	1735	2	PRDM5	4	121774660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32360	121774660	69379616	5983	14134											
PRDM5	11107	broad.mit.edu	37	chr4	121774689	121774689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacttctcccttactccCacgaacctgaaacattaaag	3	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121774689	A	A	121774689	3	1	9	1	0	0	0	0	1	0	0	0	12566	594	21	2	1764	2	PRDM5	4	121774689	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	121774689	69379587	5984	14135											
TNIP3	79931	broad.mit.edu	37	chr4	122078236	122078236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccgggctcgaggacccGggccccgcccacctcctccc	10	23	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122078236	T	T	122078236	1	4	9	0	1	0	0	0	0	0	0	0	16439	1131	39	1		1	TNIP3	4	122078236	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	303547	122078236	69076040	5985	14136											
TNIP3	79931	broad.mit.edu	37	chr4	122078334	122078334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttctctgcctctgatgcGgatccttctcccgcgtgctg	9	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122078334	T	T	122078334	3	4	9	1	0	0	0	0	1	0	0	0	16439	1116	39	1	731	1	TNIP3	4	122078334	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98	122078334	69075942	5986	14137											
QRFPR	84109	broad.mit.edu	37	chr4	122290640	122290640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtttgagattatgtgccCgtggtggctgtttcctccct	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122290640	A	A	122290640	1	1	9	0	1	0	0	0	0	0	0	0	12986	667	23	1		1	QRFPR	4	122290640	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	212306	122290640	68863636	5987	14138											
ANXA5	308	broad.mit.edu	37	chr4	122607484	122607484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagtttctgcatcagccCgctcatcaaatccagggaag	10	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122607484	A	A	122607484	3	1	9	1	0	0	0	0	1	0	0	0	721	652	23	1	953	1	ANXA5	4	122607484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	316844	122607484	68546792	5988	14139											
CCNA2	890	broad.mit.edu	37	chr4	122739343	122739343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgattcaggctacagagaaGggaatagagaacccctgagt	12	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122739343	T	T	122739343	1	4	9	0	1	0	0	0	0	0	0	0	2940	1015	35	2		2	CCNA2	4	122739343	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	131859	122739343	68414933	5989	14140											
CCNA2	890	broad.mit.edu	37	chr4	122742166	122742166	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggtatgtgtgaatatcctCatggtagtctggtacttcat	10	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122742166	T	T	122742166	3	4	9	1	0	0	0	0	1	0	0	0	2940	835	29	4	784	4	CCNA2	4	122742166	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2823	122742166	68412110	5990	14141											
KIAA1109	84162	broad.mit.edu	37	chr4	123120577	123120577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactaccagcatgcaatatcGgacccttttagaagcagaaa	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123120577	T	T	123120577	3	4	9	1	0	0	0	0	1	0	0	0	8278	1116	39	1	1398	1	KIAA1109	4	123120577	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	378411	123120577	68033699	5991	14142											
KIAA1109	84162	broad.mit.edu	37	chr4	123130977	123130977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttactcttcaaaggtctGgttgggttgaatgctggact	12	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123130977	T	T	123130977	3	4	9	1	0	0	0	0	1	0	0	0	8278	1348	47	2	2002	2	KIAA1109	4	123130977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10400	123130977	68023299	5992	14143											
KIAA1109	84162	broad.mit.edu	37	chr4	123140553	123140553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaggttatctcaagtcCtgttttgtcactgtcaacat	8	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123140553	A	A	123140553	3	1	9	1	0	0	0	0	1	0	0	0	8278	681	24	2	2380	2	KIAA1109	4	123140553	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9576	123140553	68013723	5993	14144											
KIAA1109	84162	broad.mit.edu	37	chr4	123150353	123150353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttagcagtagatggagcCgatatttacattgttgagca	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123150353	A	A	123150353	2	1	9	1	0	0	0	0	0	0	0	1	8278	639	23	1		1	KIAA1109	4	123150353	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9800	123150353	68003923	5994	14145											
KIAA1109	84162	broad.mit.edu	37	chr4	123155915	123155915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttttttgttttcttttGgggtcggtttaggttgtggt	14	2	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123155915	T	T	123155915	1	4	9	0	1	0	0	0	0	0	0	0	8278	1363	47	2		2	KIAA1109	4	123155915	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5562	123155915	67998361	5995	14146											
KIAA1109	84162	broad.mit.edu	37	chr4	123167449	123167449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagactaatgttagcatacCaaaggtaacaatttaatatt	5	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123167449	A	A	123167449	3	1	9	1	0	0	0	0	1	0	0	0	8278	594	21	2	5302	2	KIAA1109	4	123167449	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11534	123167449	67986827	5996	14147											
KIAA1109	84162	broad.mit.edu	37	chr4	123188004	123188004	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaatgccattctgctacCgaatgtactttggagaacac	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123188004	A	A	123188004	2	1	9	1	0	0	0	0	0	0	0	1	8278	644	23	1		1	KIAA1109	4	123188004	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20555	123188004	67966272	5997	14148											
KIAA1109	84162	broad.mit.edu	37	chr4	123227200	123227200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtggcctttgatagaGgtaagataaagtcaatcact	10	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123227200	T	T	123227200	3	4	9	1	0	0	0	0	1	0	0	0	8278	1014	35	2	10059	2	KIAA1109	4	123227200	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39196	123227200	67927076	5998	14149											
KIAA1109	84162	broad.mit.edu	37	chr4	123239424	123239424	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attacggaggtccagtatgcGggtgagttctcttttttctt	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123239424	C	C	123239424	3	2	9	1	0	0	0	0	1	0	0	0	8278	1130	39	4	11035	4	KIAA1109	4	123239424	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12224	123239424	67914852	5999	14150											
KIAA1109	84162	broad.mit.edu	37	chr4	123252618	123252618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactttgaacttgatatacGggttgaaattgatagtggaa	11	3	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123252618	T	T	123252618	3	4	9	1	0	0	0	0	1	0	0	0	8278	1116	39	1	11645	1	KIAA1109	4	123252618	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13194	123252618	67901658	6000	14151											
KIAA1109	84162	broad.mit.edu	37	chr4	123255649	123255649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctttaccttccactgtcCagagcaagactaacacctta	4	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123255649	A	A	123255649	3	1	9	1	0	0	0	0	1	0	0	0	8278	595	21	2	12063	2	KIAA1109	4	123255649	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3031	123255649	67898627	6001	14152											
KIAA1109	84162	broad.mit.edu	37	chr4	123264572	123264572	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctcactgtaggttcatcGggattaggcagccctcttgg	13	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123264572	T	T	123264572	2	4	9	1	0	0	0	0	0	0	0	1	8278	1103	39	1		1	KIAA1109	4	123264572	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8923	123264572	67889704	6002	14153											
KIAA1109	84162	broad.mit.edu	37	chr4	123265624	123265624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaaagtgagtttgtcacGgatcaggcgttcaggaggtg	15	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123265624	T	T	123265624	3	4	9	1	0	0	0	0	1	0	0	0	8278	1116	39	1	12927	1	KIAA1109	4	123265624	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1052	123265624	67888652	6003	14154											
KIAA1109	84162	broad.mit.edu	37	chr4	123277693	123277693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacagttgcatttcatgtGgatgcatttacatagaccta	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123277693	T	T	123277693	1	4	9	0	1	0	0	0	0	0	0	0	8278	1363	47	2		2	KIAA1109	4	123277693	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12069	123277693	67876583	6004	14155											
IL2	3558	broad.mit.edu	37	chr4	123374908	123374908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatattgctgattaagtccCtgggtcttaagtgaaagttt	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123374908	A	A	123374908	3	1	9	1	0	0	0	0	1	0	0	0	7736	681	24	2	161	2	IL2	4	123374908	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	97215	123374908	67779368	6005	14156											
SPATA5	166378	broad.mit.edu	37	chr4	123856935	123856935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaaacaatgatcgccaGggctgttgctaatgaagttg	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123856935	T	T	123856935	3	4	9	1	0	0	0	0	1	0	0	0	15127	1000	35	2	1236	2	SPATA5	4	123856935	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	482027	123856935	67297341	6006	14157											
ANKRD50	57182	broad.mit.edu	37	chr4	125590709	125590709	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattatgactctgtcctaaGgactgtgttgtggaagatgg	13	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125590709	T	T	125590709	2	4	9	1	0	0	0	0	0	0	0	1	677	987	35	2		2	ANKRD50	4	125590709	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1733774	125590709	65563567	6007	14158											
ANKRD50	57182	broad.mit.edu	37	chr4	125599984	125599984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcagtaatgttacaccCttcatcaacagaatcaacaa	3	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125599984	A	A	125599984	3	1	9	1	0	0	0	0	1	0	0	0	677	681	24	2	3708	2	ANKRD50	4	125599984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9275	125599984	65554292	6008	14159											
FAT4	79633	broad.mit.edu	37	chr4	126241041	126241041	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggggaaattacaaatactCatcagtttgacagggagtct	11	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126241041	A	A	126241041	3	1	9	1	0	0	0	0	1	0	0	0	5749	826	29	3	3477	3	FAT4	4	126241041	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	641057	126241041	64913235	6009	14160											
FAT4	79633	broad.mit.edu	37	chr4	126241054	126241054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatactcatcagtttgacaGggagtctcttatgaggcgga	11	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126241054	T	T	126241054	3	4	9	1	0	0	0	0	1	0	0	0	5749	1000	35	2	3490	2	FAT4	4	126241054	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	126241054	64913222	6010	14161											
FAT4	79633	broad.mit.edu	37	chr4	126241565	126241565	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacatgagaattggtgaactCgtgtcctctgttactgcaac	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126241565	A	A	126241565	2	1	9	1	0	0	0	0	0	0	0	1	5749	871	31	3		3	FAT4	4	126241565	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	511	126241565	64912711	6011	14162											
FAT4	79633	broad.mit.edu	37	chr4	126242310	126242310	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgttgatcgttatagtGgagacctgagagtggcttca	12	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126242310	T	T	126242310	4	4	9	1	0	0	0	0	0	1	0	0	5749	1349	47	2	4746	2	FAT4	4	126242310	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	745	126242310	64911966	6012	14163											
FAT4	79633	broad.mit.edu	37	chr4	126336110	126336110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttactgttgacaagaatGgtgtactcaaagtcctaaaa	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126336110	T	T	126336110	3	4	9	1	0	0	0	0	1	0	0	0	5749	1348	47	2	6010	2	FAT4	4	126336110	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	93800	126336110	64818166	6013	14164											
FAT4	79633	broad.mit.edu	37	chr4	126336205	126336205	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccacagattccagcctcCagattcacaagcactgctca	6	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126336205	A	A	126336205	2	1	9	1	0	0	0	0	0	0	0	1	5749	581	21	2		2	FAT4	4	126336205	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	126336205	64818071	6014	14165											
FAT4	79633	broad.mit.edu	37	chr4	126371285	126371285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaagttggacaatgatacGgggtggatttcagtagcatc	12	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126371285	T	T	126371285	2	4	9	1	0	0	0	0	0	0	0	1	5749	1103	39	1		1	FAT4	4	126371285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35080	126371285	64782991	6015	14166											
FAT4	79633	broad.mit.edu	37	chr4	126411115	126411115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaagtcttcctttcagcGggaagcatagcttggcctcc	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126411115	T	T	126411115	3	4	9	1	0	0	0	0	1	0	0	0	5749	1116	39	1	13204	1	FAT4	4	126411115	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39830	126411115	64743161	6016	14167											
FAT4	79633	broad.mit.edu	37	chr4	126411153	126411153	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatctcaaaaacagatccCtcagtgaagattggctgccg	8	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126411153	A	A	126411153	2	1	9	1	0	0	0	0	0	0	0	1	5749	668	24	2		2	FAT4	4	126411153	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	126411153	64743123	6017	14168											
FAT4	79633	broad.mit.edu	37	chr4	126411179	126411179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagattggctgccgtggccCgaacatttgtgccagcaacc	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126411179	A	A	126411179	3	1	9	1	0	0	0	0	1	0	0	0	5749	652	23	1	13268	1	FAT4	4	126411179	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	126411179	64743097	6018	14169											
INTU	27152	broad.mit.edu	37	chr4	128564745	128564745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatttggaattgagtgaGgatgaagaagaaagcctcct	11	4	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128564745	T	T	128564745	3	4	9	1	0	0	0	0	1	0	0	0	7856	991	35	2	222	2	INTU	4	128564745	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2153566	128564745	62589531	6019	14170											
INTU	27152	broad.mit.edu	37	chr4	128564856	128564856	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaaaaaagtatgaaccCaaactcaagcagtttaccaa	6	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128564856	A	A	128564856	2	1	9	1	0	0	0	0	0	0	0	1	7856	581	21	2		2	INTU	4	128564856	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	111	128564856	62589420	6020	14171											
INTU	27152	broad.mit.edu	37	chr4	128626745	128626745	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttgtggttaaattcaaGggttatttgatatgcagtca	9	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128626745	T	T	128626745	5	4	9	1	0	0	0	0	0	0	1	0	7856	1014	35	2	1608	2	INTU	4	128626745	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	61889	128626745	62527531	6021	14172											
SLC25A31	83447	broad.mit.edu	37	chr4	128665796	128665796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttaataatacaatgtaGgtttatgtatttatatgttt	6	1	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128665796	T	T	128665796	1	4	9	0	1	0	0	0	0	0	0	0	14609	1015	35	2		2	SLC25A31	4	128665796	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39051	128665796	62488480	6022	14173											
HSPA4L	22824	broad.mit.edu	37	chr4	128715248	128715248	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagggcctgtatatcattgGgatcaagaactcgagccatt	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128715248	T	T	128715248	4	4	9	1	0	0	0	0	0	1	0	0	7482	1233	43	2	130	2	HSPA4L	4	128715248	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49452	128715248	62439028	6023	14174											
HSPA4L	22824	broad.mit.edu	37	chr4	128730588	128730588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactcaagactctgcatttGggaacctgattcttcctgtt	7	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128730588	T	T	128730588	1	4	9	0	1	0	0	0	0	0	0	0	7482	1363	47	2		2	HSPA4L	4	128730588	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15340	128730588	62423688	6024	14175											
HSPA4L	22824	broad.mit.edu	37	chr4	128753935	128753935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatagtgaacacaatggccCaatggatggacagagtggaa	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128753935	A	A	128753935	3	1	9	1	0	0	0	0	1	0	0	0	7482	594	21	2	2500	2	HSPA4L	4	128753935	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23347	128753935	62400341	6025	14176											
MFSD8	256471	broad.mit.edu	37	chr4	128871003	128871003	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatcactacagaaaaccCtgtgaagaagcaaactaggt	7	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128871003	A	A	128871003	5	1	9	1	0	0	0	0	0	0	1	0	9631	695	24	2	1442	2	MFSD8	4	128871003	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	117068	128871003	62283273	6026	14177											
LARP1B	55132	broad.mit.edu	37	chr4	129012230	129012230	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgagggtggtaatatcCgaggttcctttagaggtcga	15	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129012230	A	A	129012230	2	1	9	1	0	0	0	0	0	0	0	1	8701	644	23	1		1	LARP1B	4	129012230	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	141227	129012230	62142046	6027	14178											
LARP1B	55132	broad.mit.edu	37	chr4	129099751	129099751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagatcctaacaaaacacCaagattttatcctgttgtta	4	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129099751	A	A	129099751	3	1	9	1	0	0	0	0	1	0	0	0	8701	594	21	2	2030	2	LARP1B	4	129099751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87521	129099751	62054525	6028	14179											
PHF17	79960	broad.mit.edu	37	chr4	129767661	129767661	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaggtgcctgtgagcccGgggaccatccctcagcctgt	13	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129767661	T	T	129767661	2	4	9	1	0	0	0	0	0	0	0	1	11923	1103	39	1		1	PHF17	4	129767661	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	667910	129767661	61386615	6029	14180											
PHF17	79960	broad.mit.edu	37	chr4	129776902	129776902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagctatgaagcccaccCgtagcggaaccaagtgggtc	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129776902	A	A	129776902	3	1	9	1	0	0	0	0	1	0	0	0	11923	652	23	1	836	1	PHF17	4	129776902	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9241	129776902	61377374	6030	14181											
SCLT1	132320	broad.mit.edu	37	chr4	129886409	129886409	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaattgttttatactagacTgtaactgctgtaaacgccta	6	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129886409	G	G	129886409	3	3	9	1	0	0	0	0	1	0	0	0	14019	1580	55	5	1268	5	SCLT1	4	129886409	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	109507	129886409	61267867	6031	14182											
C4orf33	132321	broad.mit.edu	37	chr4	130030438	130030438	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcatgtttttcaaacactCatgaggaatcttaattttga	5	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130030438	A	A	130030438	1	1	9	0	1	0	0	0	0	0	0	0	2286	841	29	3		3	C4orf33	4	130030438	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	144029	130030438	61123838	6032	14183											
PCDH10	57575	broad.mit.edu	37	chr4	134071466	134071466	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgggtttcagacggtgccCaactcaaggaccccttactt	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134071466	A	A	134071466	2	1	9	1	0	0	0	0	0	0	0	1	11601	581	21	2		2	PCDH10	4	134071466	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4041028	134071466	57082810	6033	14184											
PCDH10	57575	broad.mit.edu	37	chr4	134072570	134072570	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccctggaccgagaggcGggggactcctacaccctgac	13	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134072570	T	T	134072570	2	4	9	1	0	0	0	0	0	0	0	1	11601	1103	39	1		1	PCDH10	4	134072570	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1104	134072570	57081706	6034	14185											
PCDH18	54510	broad.mit.edu	37	chr4	138449681	138449681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcgctgaatccttcaccCaacagcctatctattggaga	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138449681	A	A	138449681	3	1	9	1	0	0	0	0	1	0	0	0	11607	593	21	2	724	2	PCDH18	4	138449681	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4377111	138449681	52704595	6035	14186											
ELF2	1998	broad.mit.edu	37	chr4	140046278	140046278	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgttgaagcttacaaaatGagaaagttataaataatgaa	7	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140046278	T	T	140046278	1	4	9	0	1	0	0	0	0	0	0	0	5096	1305	45	3		3	ELF2	4	140046278	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1596597	140046278	51107998	6036	14187											
C4orf49	84709	broad.mit.edu	37	chr4	140188007	140188007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctgtgacctctggccCggtttcagcactgactgctg	11	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140188007	A	A	140188007	3	1	9	1	0	0	0	0	1	0	0	0	2298	652	23	1	257	1	C4orf49	4	140188007	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	141729	140188007	50966269	6037	14188											
NAA15	80155	broad.mit.edu	37	chr4	140265404	140265404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcagaatcaagttcttcGggaagcaggtctctatagag	10	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140265404	T	T	140265404	3	4	9	1	0	0	0	0	1	0	0	0	10212	1116	39	1	624	1	NAA15	4	140265404	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77397	140265404	50888872	6038	14189											
NAA15	80155	broad.mit.edu	37	chr4	140272711	140272711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggatgaatttcagcaaGggttgcccaccagtcttcaa	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140272711	T	T	140272711	3	4	9	1	0	0	0	0	1	0	0	0	10212	991	35	2	994	2	NAA15	4	140272711	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7307	140272711	50881565	6039	14190											
MGST2	4258	broad.mit.edu	37	chr4	140624703	140624703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaacggtaaggagaaccCagtaattttgtatttatgca	8	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140624703	A	A	140624703	1	1	9	0	1	0	0	0	0	0	0	0	9654	609	21	2		2	MGST2	4	140624703	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	351992	140624703	50529573	6040	14191											
MAML3	55534	broad.mit.edu	37	chr4	140810771	140810771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaggtctgcattgaagtGggtcaggggtttagtgttgc	15	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140810771	T	T	140810771	3	4	9	1	0	0	0	0	1	0	0	0	9299	1348	47	2	1613	2	MAML3	4	140810771	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	186068	140810771	50343505	6041	14192											
MAML3	55534	broad.mit.edu	37	chr4	140810935	140810935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccattggaggcactataGggttttggttgttaaaggct	13	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140810935	T	T	140810935	3	4	9	1	0	0	0	0	1	0	0	0	9299	1000	35	2	1777	2	MAML3	4	140810935	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	164	140810935	50343341	6042	14193											
MAML3	55534	broad.mit.edu	37	chr4	140811005	140811005	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcagtaaaagctgctcCatatggactagagggaggtc	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140811005	A	A	140811005	4	1	9	1	0	0	0	0	0	1	0	0	9299	603	21	2	1847	2	MAML3	4	140811005	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	140811005	50343271	6043	14194											
CLGN	1047	broad.mit.edu	37	chr4	141320055	141320055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatttttgctctttcatcCcattcctcaggttttttatc	5	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141320055	A	A	141320055	3	1	9	1	0	0	0	0	1	0	0	0	3556	624	22	2	1030	2	CLGN	4	141320055	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	509050	141320055	49834221	6044	14195											
TBC1D9	23158	broad.mit.edu	37	chr4	141543334	141543334	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctcctcccactcccccGggaaggcgcccgtgtcagcc	9	22	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141543334	T	T	141543334	1	4	9	0	1	0	0	0	0	0	0	0	15749	1131	39	1		1	TBC1D9	4	141543334	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	223279	141543334	49610942	6045	14196											
TBC1D9	23158	broad.mit.edu	37	chr4	141543675	141543675	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtatgaggacatggagctgtCgtccttggtgtcgtcgtcag	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141543675	G	G	141543675	3	3	9	1	0	0	0	0	1	0	0	0	15749	884	31	4	329	4	TBC1D9	4	141543675	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	341	141543675	49610601	6046	14197											
TBC1D9	23158	broad.mit.edu	37	chr4	141578757	141578757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgcatccagcacagctaGggccaactggaatatcactt	8	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141578757	T	T	141578757	3	4	9	1	0	0	0	0	1	0	0	0	15749	991	35	2	1709	2	TBC1D9	4	141578757	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35082	141578757	49575519	6047	14198											
TBC1D9	23158	broad.mit.edu	37	chr4	141578866	141578866	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgaggaaccaagacagGgagatggtggaaatcacgcc	15	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141578866	T	T	141578866	2	4	9	1	0	0	0	0	0	0	0	1	15749	1219	43	2		2	TBC1D9	4	141578866	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	109	141578866	49575410	6048	14199											
TBC1D9	23158	broad.mit.edu	37	chr4	141578927	141578927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagctgtgggacgtagtctCgtgctagctcctcaaagaca	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141578927	A	A	141578927	3	1	9	1	0	0	0	0	1	0	0	0	15749	884	31	3	1879	3	TBC1D9	4	141578927	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	141578927	49575349	6049	14200											
TBC1D9	23158	broad.mit.edu	37	chr4	141592039	141592039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgatggataagggactGgggagcacactggagctgtc	17	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141592039	T	T	141592039	2	4	9	1	0	0	0	0	0	0	0	1	15749	1335	47	2		2	TBC1D9	4	141592039	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13112	141592039	49562237	6050	14201											
TBC1D9	23158	broad.mit.edu	37	chr4	141600140	141600140	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatttccttttgagtttGggcagggatcgatcttgttc	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141600140	T	T	141600140	2	4	9	1	0	0	0	0	0	0	0	1	15749	1335	47	2		2	TBC1D9	4	141600140	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8101	141600140	49554136	6051	14202											
ZNF330	27309	broad.mit.edu	37	chr4	142152563	142152563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattctaagaaccaaataacGggattttaaaattaatctat	4	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142152563	T	T	142152563	1	4	9	0	1	0	0	0	0	0	0	0	17974	1131	39	1		1	ZNF330	4	142152563	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	552423	142152563	49001713	6052	14203											
ZNF330	27309	broad.mit.edu	37	chr4	142152631	142152631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtcagcactcatgtctcCgttgtaaggtataccaatgc	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142152631	A	A	142152631	3	1	9	1	0	0	0	0	1	0	0	0	17974	652	23	1	588	1	ZNF330	4	142152631	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	142152631	49001645	6053	14204											
IL15	3600	broad.mit.edu	37	chr4	142643165	142643165	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagatcttattcaagtgAgtactcatttttccataaaa	5	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142643165	T	T	142643165	1	4	9	0	1	0	0	0	0	0	0	0	7701	319	11	5		5	IL15	4	142643165	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	490534	142643165	48511111	6054	14205											
INPP4B	8821	broad.mit.edu	37	chr4	143226658	143226658	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgacttcagcagctctccCactttaaaactggcatagcc	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143226658	A	A	143226658	2	1	9	1	0	0	0	0	0	0	0	1	7823	581	21	2		2	INPP4B	4	143226658	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	583493	143226658	47927618	6055	14206											
INPP4B	8821	broad.mit.edu	37	chr4	143324091	143324091	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagtaccagtacttacGgtgtcatgagacttatcctt	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143324091	T	T	143324091	2	4	9	1	0	0	0	0	0	0	0	1	7823	1130	39	1		1	INPP4B	4	143324091	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	97433	143324091	47830185	6056	14207											
USP38	84640	broad.mit.edu	37	chr4	144141536	144141536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatttgatgacaacgaccCaccaggaagctgtggaccaa	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144141536	A	A	144141536	3	1	9	1	0	0	0	0	1	0	0	0	17196	594	21	2	3094	2	USP38	4	144141536	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	817445	144141536	47012740	6057	14208											
GAB1	2549	broad.mit.edu	37	chr4	144387296	144387296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgatggaggaagcagccCtatgatcaagcccaaaggag	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144387296	A	A	144387296	3	1	9	1	0	0	0	0	1	0	0	0	6208	681	24	2	1972	2	GAB1	4	144387296	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	245760	144387296	46766980	6058	14209											
SMARCA5	8467	broad.mit.edu	37	chr4	144465906	144465906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagattgcattcacagagtGgattgaaccacctaaacgag	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144465906	T	T	144465906	3	4	9	1	0	0	0	0	1	0	0	0	14885	1357	47	2	2255	2	SMARCA5	4	144465906	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78610	144465906	46688370	6059	14210											
GYPA	2993	broad.mit.edu	37	chr4	145050255	145050255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcaatgccttttctgccCaatctcattgtcttgaacag	5	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145050255	A	A	145050255	1	1	9	0	1	0	0	0	0	0	0	0	6973	609	21	2		2	GYPA	4	145050255	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	584349	145050255	46104021	6060	14211											
GYPA	2993	broad.mit.edu	37	chr4	145050335	145050335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgaagaagactgttccCatgaagcaatattttaaggg	10	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145050335	A	A	145050335	1	1	9	0	1	0	0	0	0	0	0	0	6973	609	21	2		2	GYPA	4	145050335	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	145050335	46103941	6061	14212											
HHIP	64399	broad.mit.edu	37	chr4	145580846	145580846	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgggctgcggcagccCgttggtgccctgcatagtgg	18	10	0	1	rs140512242		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145580846	A	A	145580846	2	1	9	1	0	0	0	0	0	0	0	1	7159	639	23	1		1	HHIP	4	145580846	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	530511	145580846	45573430	6062	14213											
ANAPC10	10393	broad.mit.edu	37	chr4	145916629	145916629	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattttaatttgtctcatatGggtgtctcttccattctggt	7	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145916629	C	C	145916629	3	2	9	1	0	0	0	0	1	0	0	0	599	1348	47	4	107	4	ANAPC10	4	145916629	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	335783	145916629	45237647	6063	14214											
ABCE1	6059	broad.mit.edu	37	chr4	146038493	146038493	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtattagactatctctcCgacttcatctgctgtttata	6	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146038493	A	A	146038493	2	1	9	1	0	0	0	0	0	0	0	1	64	639	23	1		1	ABCE1	4	146038493	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	121864	146038493	45115783	6064	14215											
ABCE1	6059	broad.mit.edu	37	chr4	146044238	146044238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacccacaatttgtgacCgatgtaatgaagcctctgca	7	12	2	2	rs143824754		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146044238	A	A	146044238	2	1	9	1	0	0	0	0	0	0	0	1	64	639	23	1		1	ABCE1	4	146044238	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5745	146044238	45110038	6065	14216											
ABCE1	6059	broad.mit.edu	37	chr4	146044398	146044398	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atctggtggtgaactacagcGagtagctttagccctttgct	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146044398	C	C	146044398	3	2	9	1	0	0	0	0	1	0	0	0	64	1058	37	4	1460	4	ABCE1	4	146044398	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	160	146044398	45109878	6066	14217											
ABCE1	6059	broad.mit.edu	37	chr4	146044509	146044509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctcgagttgtcaaacGgtaaatatcttgctcctagc	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146044509	T	T	146044509	3	4	9	1	0	0	0	0	1	0	0	0	64	1130	39	1	1571	1	ABCE1	4	146044509	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	111	146044509	45109767	6067	14218											
OTUD4	54726	broad.mit.edu	37	chr4	146058685	146058685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtactgataaccttcatccCgacttctgcttggctgtcct	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146058685	A	A	146058685	3	1	9	1	0	0	0	0	1	0	0	0	11408	652	23	1	106	1	OTUD4	4	146058685	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14176	146058685	45095591	6068	14219											
OTUD4	54726	broad.mit.edu	37	chr4	146065495	146065495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcttctgtatccattctcCgcctgcttccttttctatca	4	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146065495	A	A	146065495	3	1	9	1	0	0	0	0	1	0	0	0	11408	652	23	1	1858	1	OTUD4	4	146065495	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6810	146065495	45088781	6069	14220											
MMAA	166785	broad.mit.edu	37	chr4	146560355	146560355	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttttaagagcacctttcCgatgttaccacttcatcttt	5	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146560355	A	A	146560355	2	1	9	1	0	0	0	0	0	0	0	1	9732	644	23	1		1	MMAA	4	146560355	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	494860	146560355	44593921	6070	14221											
MMAA	166785	broad.mit.edu	37	chr4	146563617	146563617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgctagctgtggaccCttcttcttgtactagtggtg	11	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146563617	A	A	146563617	3	1	9	1	0	0	0	0	1	0	0	0	9732	681	24	2	548	2	MMAA	4	146563617	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3262	146563617	44590659	6071	14222											
ZNF827	152485	broad.mit.edu	37	chr4	146686193	146686193	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgctccagcagctgttcGggggtcttcatgaacttgtg	12	9	2	1	rs151005596		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146686193	T	T	146686193	2	4	9	1	0	0	0	0	0	0	0	1	18309	1103	39	1		1	ZNF827	4	146686193	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	122576	146686193	44468083	6072	14223											
ZNF827	152485	broad.mit.edu	37	chr4	146770594	146770594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttcggttttctctcgccCgattaaagtgctgtagccaa	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146770594	A	A	146770594	3	1	9	1	0	0	0	0	1	0	0	0	18309	652	23	1	1164	1	ZNF827	4	146770594	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84401	146770594	44383682	6073	14224											
PRMT10	90826	broad.mit.edu	37	chr4	148594115	148594115	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacatgataatacctttcGggaatatgttttggaatctc	7	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148594115	T	T	148594115	2	4	9	1	0	0	0	0	0	0	0	1	12642	1103	39	1		1	PRMT10	4	148594115	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1823521	148594115	42560161	6074	14225											
ARHGAP10	79658	broad.mit.edu	37	chr4	148802988	148802988	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaaaatgattatttgcaGggggacggagaggtgttctt	14	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148802988	T	T	148802988	5	4	9	1	0	0	0	0	0	0	1	0	864	1014	35	2	977	2	ARHGAP10	4	148802988	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	208873	148802988	42351288	6075	14226											
ARHGAP10	79658	broad.mit.edu	37	chr4	148985599	148985599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggctcgagccgtgtatcCgtgtgaagcagaacacagct	13	10	0	2	rs141244949		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148985599	A	A	148985599	3	1	9	1	0	0	0	0	1	0	0	0	864	652	23	1	2299	1	ARHGAP10	4	148985599	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	182611	148985599	42168677	6076	14227											
NR3C2	4306	broad.mit.edu	37	chr4	149181304	149181304	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagatttaaataactacacCgtaaaggcacatttaacatg	6	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149181304	A	A	149181304	1	1	9	0	1	0	0	0	0	0	0	0	10726	667	23	1		1	NR3C2	4	149181304	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	195705	149181304	41972972	6077	14228											
NR3C2	4306	broad.mit.edu	37	chr4	149356946	149356946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggactgggaaccacatccCgcaatgtactggatccagca	10	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149356946	A	A	149356946	3	1	9	1	0	0	0	0	1	0	0	0	10726	652	23	1	1919	1	NR3C2	4	149356946	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175642	149356946	41797330	6078	14229											
DCLK2	166614	broad.mit.edu	37	chr4	151153645	151153645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttcttggtgcctagtccCacaatttacaacatccttga	5	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151153645	A	A	151153645	1	1	9	0	1	0	0	0	0	0	0	0	4325	609	21	2		2	DCLK2	4	151153645	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1796699	151153645	40000631	6079	14230											
LRBA	987	broad.mit.edu	37	chr4	151198931	151198931	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagtactgggattacaGgtgtaagccaacacgaccag	10	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151198931	C	C	151198931	1	2	9	0	1	0	0	0	0	0	0	0	9018	1015	35	4		4	LRBA	4	151198931	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45286	151198931	39955345	6080	14231											
LRBA	987	broad.mit.edu	37	chr4	151344309	151344309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtacaggaccaacctcGgggcagggtccctccggtcc	12	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151344309	T	T	151344309	1	4	9	0	1	0	0	0	0	0	0	0	9018	1131	39	1		1	LRBA	4	151344309	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	145378	151344309	39809967	6081	14232											
LRBA	987	broad.mit.edu	37	chr4	151509163	151509163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacagcacccaccatccCatcataagaaaaaatgaaac	3	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151509163	A	A	151509163	1	1	9	0	1	0	0	0	0	0	0	0	9018	609	21	2		2	LRBA	4	151509163	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	164854	151509163	39645113	6082	14233											
LRBA	987	broad.mit.edu	37	chr4	151749355	151749355	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaagatctgaactgcacGggttgttccacagatagatc	9	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151749355	T	T	151749355	2	4	9	1	0	0	0	0	0	0	0	1	9018	1103	39	1		1	LRBA	4	151749355	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	240192	151749355	39404921	6083	14234											
LRBA	987	broad.mit.edu	37	chr4	151749785	151749785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgatttctatatcatacCcagaaacacaagaaataaac	5	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151749785	A	A	151749785	1	1	9	0	1	0	0	0	0	0	0	0	9018	638	22	2		2	LRBA	4	151749785	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	430	151749785	39404491	6084	14235											
LRBA	987	broad.mit.edu	37	chr4	151773287	151773287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggaaacagtagtttctGgtgacatagctgaagaccct	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151773287	T	T	151773287	3	4	9	1	0	0	0	0	1	0	0	0	9018	1348	47	2	5160	2	LRBA	4	151773287	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23502	151773287	39380989	6085	14236											
LRBA	987	broad.mit.edu	37	chr4	151793844	151793844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgttttaaaaaataaccCattgccttaagagcttgtac	6	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151793844	A	A	151793844	3	1	9	1	0	0	0	0	1	0	0	0	9018	594	21	2	6526	2	LRBA	4	151793844	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20557	151793844	39360432	6086	14237											
LRBA	987	broad.mit.edu	37	chr4	151827482	151827482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcctattaccaagaagccCttacaggcaagcatctgttc	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151827482	A	A	151827482	3	1	9	1	0	0	0	0	1	0	0	0	9018	680	24	2	7210	2	LRBA	4	151827482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33638	151827482	39326794	6087	14238											
LRBA	987	broad.mit.edu	37	chr4	151837721	151837721	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacctctaaatattcttctCagtttcaaagtaaggtttta	4	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151837721	A	A	151837721	1	1	9	0	1	0	0	0	0	0	0	0	9018	841	29	3		3	LRBA	4	151837721	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10239	151837721	39316555	6088	14239											
SH3D19	152503	broad.mit.edu	37	chr4	152065279	152065279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcacattttaatctttGgagcctaaagcatttaataa	4	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152065279	T	T	152065279	1	4	9	0	1	0	0	0	0	0	0	0	14362	1363	47	2		2	SH3D19	4	152065279	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	227558	152065279	39088997	6089	14240											
PET112L	5188	broad.mit.edu	37	chr4	152600949	152600949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcacagtcagaagctgtcGggagtgtggacatacctgtt	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152600949	T	T	152600949	1	4	9	0	1	0	0	0	0	0	0	0	11828	1131	39	1		1	PET112L	4	152600949	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	535670	152600949	38553327	6090	14241											
PET112L	5188	broad.mit.edu	37	chr4	152640661	152640661	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccaggcctgtcatcacCgccgcttctacacacctcct	7	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152640661	A	A	152640661	2	1	9	1	0	0	0	0	0	0	0	1	11828	639	23	1		1	PET112L	4	152640661	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39712	152640661	38513615	6091	14242											
FBXW7	55294	broad.mit.edu	37	chr4	153247225	153247225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttcagtctctggatccCacacctttaccataaaatca	5	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153247225	A	A	153247225	3	1	9	1	0	0	0	0	1	0	0	0	5826	595	21	2	558	2	FBXW7	4	153247225	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	606564	153247225	37907051	6092	14243											
FHDC1	85462	broad.mit.edu	37	chr4	153874673	153874673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactattttggatgcaaaacGgagcatgaacattgggatat	10	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153874673	T	T	153874673	3	4	9	1	0	0	0	0	1	0	0	0	5933	1116	39	1	527	1	FHDC1	4	153874673	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	627448	153874673	37279603	6093	14244											
FHDC1	85462	broad.mit.edu	37	chr4	153889118	153889118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaactgcccactctcccCtttcttcttttagattatct	2	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153889118	A	A	153889118	1	1	9	0	1	0	0	0	0	0	0	0	5933	696	24	2		2	FHDC1	4	153889118	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14445	153889118	37265158	6094	14245											
FHDC1	85462	broad.mit.edu	37	chr4	153889302	153889302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctcccagcagcacccCggggctggttaaatttgcat	9	14	2	0	rs137928456	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153889302	A	A	153889302	1	1	9	0	1	0	0	0	0	0	0	0	5933	667	23	1		1	FHDC1	4	153889302	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	184	153889302	37264974	6095	14246											
TRIM2	23321	broad.mit.edu	37	chr4	154197120	154197120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccagacctccatcctgccCgagaaaggggtggccgcgct	13	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154197120	A	A	154197120	2	1	9	1	0	0	0	0	0	0	0	1	16618	639	23	1		1	TRIM2	4	154197120	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	307818	154197120	36957156	6096	14247											
KIAA0922	23240	broad.mit.edu	37	chr4	154502016	154502016	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcttgcaggtgcaactGgaatgcagtttacataataa	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154502016	T	T	154502016	2	4	9	1	0	0	0	0	0	0	0	1	8271	1335	47	2		2	KIAA0922	4	154502016	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	304896	154502016	36652260	6097	14248											
KIAA0922	23240	broad.mit.edu	37	chr4	154506707	154506707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaccgcaaccattttgacCgtagtgttgtattaaatgat	9	7	0	2	rs115067608	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154506707	A	A	154506707	3	1	9	1	0	0	0	0	1	0	0	0	8271	652	23	1	1305	1	KIAA0922	4	154506707	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4691	154506707	36647569	6098	14249											
KIAA0922	23240	broad.mit.edu	37	chr4	154544186	154544186	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcagcaccagcagctcCgacggggataagaagcccat	13	12	0	1	rs147267955	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154544186	A	A	154544186	2	1	9	1	0	0	0	0	0	0	0	1	8271	639	23	1		1	KIAA0922	4	154544186	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37479	154544186	36610090	6099	14250											
KIAA0922	23240	broad.mit.edu	37	chr4	154555397	154555397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttccagcgcatactgtcCattggaattgaacgattaca	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154555397	A	A	154555397	3	1	9	1	0	0	0	0	1	0	0	0	8271	594	21	2	4512	2	KIAA0922	4	154555397	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11211	154555397	36598879	6100	14251											
KIAA0922	23240	broad.mit.edu	37	chr4	154557517	154557517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggttccatctgggcccCgcaaagcgatgtgtatgaaa	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154557517	A	A	154557517	3	1	9	1	0	0	0	0	1	0	0	0	8271	652	23	1	4760	1	KIAA0922	4	154557517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2120	154557517	36596759	6101	14252											
KIAA0922	23240	broad.mit.edu	37	chr4	154557593	154557593	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacatggaaaaccaagcGgtcgtgtgcaaggaatacta	10	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154557593	T	T	154557593	2	4	9	1	0	0	0	0	0	0	0	1	8271	1103	39	1		1	KIAA0922	4	154557593	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76	154557593	36596683	6102	14253											
TLR2	7097	broad.mit.edu	37	chr4	154626276	154626276	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctcattcttctggagccCattgagaaaaaagccattcc	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154626276	A	A	154626276	2	1	9	1	0	0	0	0	0	0	0	1	16074	581	21	2		2	TLR2	4	154626276	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68683	154626276	36528000	6103	14254											
DCHS2	54798	broad.mit.edu	37	chr4	155158066	155158066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaacatatgtgttttcacGggtccagtcatggtcgatgt	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155158066	T	T	155158066	3	4	9	1	0	0	0	0	1	0	0	0	4321	1116	39	1	2381	1	DCHS2	4	155158066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	531790	155158066	35996210	6104	14255											
DCHS2	54798	broad.mit.edu	37	chr4	155250779	155250779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtggcgtttcgtggtgGggagccgcggtctgtcacta	17	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155250779	T	T	155250779	3	4	9	1	0	0	0	0	1	0	0	0	4321	1232	43	2	6457	2	DCHS2	4	155250779	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	92713	155250779	35903497	6105	14256											
DCHS2	54798	broad.mit.edu	37	chr4	155254121	155254121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttcgaaagtccaggatGggctgtgttcgcgtttctcg	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155254121	T	T	155254121	3	4	9	1	0	0	0	0	1	0	0	0	4321	1348	47	2	7172	2	DCHS2	4	155254121	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3342	155254121	35900155	6106	14257											
DCHS2	54798	broad.mit.edu	37	chr4	155254411	155254411	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggatattctaatctcatcCgaggtcctgaggaacgctgg	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155254411	A	A	155254411	2	1	9	1	0	0	0	0	0	0	0	1	4321	639	23	1		1	DCHS2	4	155254411	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	290	155254411	35899865	6107	14258											
PLRG1	5356	broad.mit.edu	37	chr4	155460338	155460338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttccagccaccagatccCataatcgaattgtagtatca	5	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155460338	A	A	155460338	3	1	9	1	0	0	0	0	1	0	0	0	12201	595	21	2	490	2	PLRG1	4	155460338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	205927	155460338	35693938	6108	14259											
PLRG1	5356	broad.mit.edu	37	chr4	155468953	155468953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttgaagtaggcatatGcaacacaggaccatactcat	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155468953	T	T	155468953	3	4	9	1	0	0	0	0	1	0	0	0	12201	1319	46	3	1427	3	PLRG1	4	155468953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8615	155468953	35685323	6109	14260											
FGA	2243	broad.mit.edu	37	chr4	155506820	155506820	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtctcctctgttgtaactCgtgctactagtaaattgttt	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155506820	A	A	155506820	2	1	9	1	0	0	0	0	0	0	0	1	5887	871	31	3		3	FGA	4	155506820	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37867	155506820	35647456	6110	14261											
FGA	2243	broad.mit.edu	37	chr4	155510473	155510473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttatttgctatgtaGgtaactattcaattattttc	4	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155510473	T	T	155510473	1	4	9	0	1	0	0	0	0	0	0	0	5887	1015	35	2		2	FGA	4	155510473	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3653	155510473	35643803	6111	14262											
FGG	2266	broad.mit.edu	37	chr4	155526087	155526087	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgttgctgtccttctcCaattgtgagtctgttgaatg	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155526087	A	A	155526087	4	1	9	1	0	0	0	0	0	1	0	0	5927	603	21	2	123	2	FGG	4	155526087	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15614	155526087	35628189	6112	14263											
FGG	2266	broad.mit.edu	37	chr4	155526147	155526147	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttcatggaataccaccGggttttccaagtggcccaaa	8	11	2	0	rs75848804		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155526147	T	T	155526147	2	4	9	1	0	0	0	0	0	0	0	1	5927	1115	39	1		1	FGG	4	155526147	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60	155526147	35628129	6113	14264											
FGG	2266	broad.mit.edu	37	chr4	155533519	155533519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccagttcacacacaaaGggagaaacataaaaactact	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155533519	T	T	155533519	1	4	9	0	1	0	0	0	0	0	0	0	5927	1015	35	2		2	FGG	4	155533519	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7372	155533519	35620757	6114	14265											
LRAT	9227	broad.mit.edu	37	chr4	155665683	155665683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctacctaggagacaacCgtgttgcccacatgatgccc	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155665683	A	A	155665683	3	1	9	1	0	0	0	0	1	0	0	0	9017	652	23	1	207	1	LRAT	4	155665683	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132164	155665683	35488593	6115	14266											
LRAT	9227	broad.mit.edu	37	chr4	155670386	155670386	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattgagaaaaatgtgaccCgtaacactgtgttctggata	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155670386	A	A	155670386	1	1	9	0	1	0	0	0	0	0	0	0	9017	667	23	1		1	LRAT	4	155670386	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	4703	155670386	35483890	6116	14267											
NPY2R	4887	broad.mit.edu	37	chr4	156135651	156135651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcccctggccatcttccGggagtattcgctgattgaga	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156135651	T	T	156135651	3	4	9	1	0	0	0	0	1	0	0	0	10704	1116	39	1	562	1	NPY2R	4	156135651	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	465265	156135651	35018625	6117	14268											
MAP9	79884	broad.mit.edu	37	chr4	156294474	156294474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctttggttatgttacCgtttgatttattggttttca	7	6	3	1	rs148881670		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156294474	A	A	156294474	3	1	9	1	0	0	0	0	1	0	0	0	9362	652	23	1	1692	1	MAP9	4	156294474	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158823	156294474	34859802	6118	14269											
GUCY1A3	2982	broad.mit.edu	37	chr4	156643250	156643250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgttggagttaaaatgcccCgttactgtctttttggaaac	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156643250	A	A	156643250	3	1	9	1	0	0	0	0	1	0	0	0	6959	652	23	1	1818	1	GUCY1A3	4	156643250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	348776	156643250	34511026	6119	14270											
GUCY1B3	2983	broad.mit.edu	37	chr4	156715060	156715060	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactcaatttttaattgaagAaaaagagtcaaaagaagagg	8	3	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156715060	T	T	156715060	3	4	9	1	0	0	0	0	1	0	0	0	6960	246	9	5	570	5	GUCY1B3	4	156715060	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	71810	156715060	34439216	6120	14271											
GLRB	2743	broad.mit.edu	37	chr4	158073983	158073983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgcttgccttctctttGggtttgcttccctggtggag	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158073983	T	T	158073983	3	4	9	1	0	0	0	0	1	0	0	0	6522	1348	47	2	1048	2	GLRB	4	158073983	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1358923	158073983	33080293	6121	14272											
GRIA2	2891	broad.mit.edu	37	chr4	158224720	158224720	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctagtctgctcccagttttcGagaggagtctatgctatttt	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158224720	T	T	158224720	2	4	9	1	0	0	0	0	0	0	0	1	6834	1045	37	3		3	GRIA2	4	158224720	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	150737	158224720	32929556	6122	14273											
GRIA2	2891	broad.mit.edu	37	chr4	158254055	158254055	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagaattgaaatctccCgaagggggaatgcaggagac	13	7	1	3	rs143505003		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158254055	A	A	158254055	2	1	9	1	0	0	0	0	0	0	0	1	6834	644	23	1		1	GRIA2	4	158254055	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29335	158254055	32900221	6123	14274											
GRIA2	2891	broad.mit.edu	37	chr4	158257613	158257613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcccttcatgagcctcGggatatctatcatgatcaag	8	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158257613	T	T	158257613	3	4	9	1	0	0	0	0	1	0	0	0	6834	1116	39	1	1600	1	GRIA2	4	158257613	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3558	158257613	32896663	6124	14275											
FAM198B	51313	broad.mit.edu	37	chr4	159048604	159048604	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccgtgtgcattgatataGgtgataagaattttggctct	10	7	1	3	rs139005471		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159048604	T	T	159048604	2	4	9	1	0	0	0	0	0	0	0	1	5576	987	35	2		2	FAM198B	4	159048604	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	790991	159048604	32105672	6125	14276											
TMEM144	55314	broad.mit.edu	37	chr4	159153963	159153963	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatcattaggatccgattaTttaaggtgtgtgtttttttc	9	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159153963	C	C	159153963	1	2	9	0	1	0	0	0	0	0	0	0	16181	1508	52	5		5	TMEM144	4	159153963	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	105359	159153963	32000313	6126	14277											
TMEM144	55314	broad.mit.edu	37	chr4	159156605	159156605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataggtgatcaacacaaccCaagacccctgttcctgggtg	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159156605	A	A	159156605	3	1	9	1	0	0	0	0	1	0	0	0	16181	595	21	2	533	2	TMEM144	4	159156605	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2642	159156605	31997671	6127	14278											
C4orf46	201725	broad.mit.edu	37	chr4	159592736	159592736	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccggtcttcccagaggcgccGaggggggacgcggtcccgac	17	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159592736	A	A	159592736	1	1	9	0	1	0	0	0	0	0	0	0	2297	1073	37	4		4	C4orf46	4	159592736	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	436131	159592736	31561540	6128	14279											
ETFDH	2110	broad.mit.edu	37	chr4	159603404	159603404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatagttggtgcaggccCtgcagggctctctgcagctg	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159603404	A	A	159603404	3	1	9	1	0	0	0	0	1	0	0	0	5313	681	24	2	243	2	ETFDH	4	159603404	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10668	159603404	31550872	6129	14280											
ETFDH	2110	broad.mit.edu	37	chr4	159606333	159606333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgaacaagcagaagccCttggtgttgaagtataccct	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159606333	A	A	159606333	3	1	9	1	0	0	0	0	1	0	0	0	5313	681	24	2	586	2	ETFDH	4	159606333	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2929	159606333	31547943	6130	14281											
ETFDH	2110	broad.mit.edu	37	chr4	159624642	159624642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggttttatgaatgttcCcaagatcaaaggtactcaca	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159624642	A	A	159624642	3	1	9	1	0	0	0	0	1	0	0	0	5313	623	22	2	1222	2	ETFDH	4	159624642	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18309	159624642	31529634	6131	14282											
ETFDH	2110	broad.mit.edu	37	chr4	159627422	159627422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgttagaaatataagacCgtcctgccacggagtactgg	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159627422	A	A	159627422	3	1	9	1	0	0	0	0	1	0	0	0	5313	652	23	1	1409	1	ETFDH	4	159627422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2780	159627422	31526854	6132	14283											
ETFDH	2110	broad.mit.edu	37	chr4	159627796	159627796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggttctgactttgaacGgctcaagccagccaaggatt	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159627796	T	T	159627796	3	4	9	1	0	0	0	0	1	0	0	0	5313	1116	39	1	1530	1	ETFDH	4	159627796	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	374	159627796	31526480	6133	14284											
ETFDH	2110	broad.mit.edu	37	chr4	159627980	159627980	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgatatatgatgggccCgagcagcgattctgtcctgc	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159627980	A	A	159627980	2	1	9	1	0	0	0	0	0	0	0	1	5313	639	23	1		1	ETFDH	4	159627980	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	184	159627980	31526296	6134	14285											
PPID	5481	broad.mit.edu	37	chr4	159631851	159631851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaaacatttaagttaGgtgtatgatttataaaggta	9	1	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159631851	T	T	159631851	1	4	9	0	1	0	0	0	0	0	0	0	12422	1015	35	2		2	PPID	4	159631851	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3871	159631851	31522425	6135	14286											
FNIP2	57600	broad.mit.edu	37	chr4	159772427	159772427	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgcattatgtagctacatGaggactaattgacctcaact	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159772427	T	T	159772427	1	4	9	0	1	0	0	0	0	0	0	0	6034	1305	45	3		3	FNIP2	4	159772427	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	140576	159772427	31381849	6136	14287											
FNIP2	57600	broad.mit.edu	37	chr4	159782927	159782927	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcctctttgggcacagctGggttagtacctaatttgact	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159782927	T	T	159782927	2	4	9	1	0	0	0	0	0	0	0	1	6034	1362	47	2		2	FNIP2	4	159782927	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10500	159782927	31371349	6137	14288											
FNIP2	57600	broad.mit.edu	37	chr4	159789300	159789300	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgagactgactcgcacCgtagtggtagggaagcagaa	14	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159789300	A	A	159789300	2	1	9	1	0	0	0	0	0	0	0	1	6034	639	23	1		1	FNIP2	4	159789300	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6373	159789300	31364976	6138	14289											
RAPGEF2	9693	broad.mit.edu	37	chr4	160189265	160189265	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgccatcgtgagagattGgtacatgatgtgtaaattca	10	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160189265	T	T	160189265	1	4	9	0	1	0	0	0	0	0	0	0	13152	1363	47	2		2	RAPGEF2	4	160189265	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	399965	160189265	30965011	6139	14290											
RAPGEF2	9693	broad.mit.edu	37	chr4	160251592	160251592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggacttttctttctagccCaatggaagtgggcaaaaagt	10	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160251592	A	A	160251592	3	1	9	1	0	0	0	0	1	0	0	0	13152	594	21	2	952	2	RAPGEF2	4	160251592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62327	160251592	30902684	6140	14291											
RAPGEF2	9693	broad.mit.edu	37	chr4	160252866	160252866	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacgttaacaaaaccatccCgagaagctcctttgcctttt	6	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160252866	A	A	160252866	2	1	9	1	0	0	0	0	0	0	0	1	13152	644	23	1		1	RAPGEF2	4	160252866	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1274	160252866	30901410	6141	14292											
FSTL5	56884	broad.mit.edu	37	chr4	162459318	162459318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtggttctatacatacGggtctttctagcagagtctt	11	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162459318	T	T	162459318	3	4	9	1	0	0	0	0	1	0	0	0	6140	1130	39	1	1259	1	FSTL5	4	162459318	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2206452	162459318	28694958	6142	14293											
FSTL5	56884	broad.mit.edu	37	chr4	162680563	162680563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgaatcttgtactcacGgaatgctctataaaattctt	6	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162680563	T	T	162680563	3	4	9	1	0	0	0	0	1	0	0	0	6140	1130	39	1	1860	1	FSTL5	4	162680563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	221245	162680563	28473713	6143	14294											
NPY1R	4886	broad.mit.edu	37	chr4	164246582	164246582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttcataatcatcatccCgagaccggaaatcacaaaag	6	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164246582	A	A	164246582	3	1	9	1	0	0	0	0	1	0	0	0	10703	652	23	1	130	1	NPY1R	4	164246582	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1566019	164246582	26907694	6144	14295											
MARCH1	55016	broad.mit.edu	37	chr4	164449874	164449874	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctagaaagatattcttcGgtgaagaaactcccaacagg	11	8	1	4	rs112116896		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164449874	T	T	164449874	1	4	9	0	1	0	0	0	0	0	0	0	9390	1131	39	1		1	MARCH1	4	164449874	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	203292	164449874	26704402	6145	14296											
ANP32C	23520	broad.mit.edu	37	chr4	165118482	165118482	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttgaacacgttttctcCgtagtcgttcaggttggtta	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118482	A	A	165118482	4	1	9	1	0	0	0	0	0	1	0	0	707	661	23	1	325	1	ANP32C	4	165118482	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	668608	165118482	26035794	6146	14297											
TRIM60	166655	broad.mit.edu	37	chr4	165961438	165961438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaggaacccccagctcCgtaatttgactgaaattgct	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165961438	A	A	165961438	3	1	9	1	0	0	0	0	1	0	0	0	16660	652	23	1	216	1	TRIM60	4	165961438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	842956	165961438	25192838	6147	14298											
CPE	1363	broad.mit.edu	37	chr4	166405631	166405631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttccaaagcttggcccGggcatactcttctttcaacc	6	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166405631	T	T	166405631	3	4	9	1	0	0	0	0	1	0	0	0	3831	1116	39	1	866	1	CPE	4	166405631	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	444193	166405631	24748645	6148	14299											
CPE	1363	broad.mit.edu	37	chr4	166405652	166405652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatactcttctttcaaccCggccatgtctgaccccaatc	6	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166405652	A	A	166405652	3	1	9	1	0	0	0	0	1	0	0	0	3831	652	23	1	887	1	CPE	4	166405652	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	166405652	24748624	6149	14300											
CPE	1363	broad.mit.edu	37	chr4	166405729	166405729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagatggaaccaccaacGgtggtgcttggtacagcgta	13	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166405729	T	T	166405729	3	4	9	1	0	0	0	0	1	0	0	0	3831	1116	39	1	964	1	CPE	4	166405729	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77	166405729	24748547	6150	14301											
TLL1	7092	broad.mit.edu	37	chr4	166795214	166795214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactatagattacaaggaccCgtgtaaagccggtaagtggc	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166795214	A	A	166795214	3	1	9	1	0	0	0	0	1	0	0	0	16068	652	23	1	160	1	TLL1	4	166795214	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	389485	166795214	24359062	6151	14302											
TLL1	7092	broad.mit.edu	37	chr4	166964548	166964548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgagagctaccacgtcGggctgacctttcagtccttt	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166964548	T	T	166964548	3	4	9	1	0	0	0	0	1	0	0	0	16068	1116	39	1	1547	1	TLL1	4	166964548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	169334	166964548	24189728	6152	14303											
SPOCK3	50859	broad.mit.edu	37	chr4	167663145	167663145	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaagaatgatctattactCacctaggagcttctttaccc	6	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167663145	A	A	167663145	1	1	9	0	1	0	0	0	0	0	0	0	15199	841	29	3		3	SPOCK3	4	167663145	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	698597	167663145	23491131	6153	14304											
ANXA10	11199	broad.mit.edu	37	chr4	169102846	169102846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcctagttctctgtgttcGagacaaaccagcctattttg	7	11	2	1	rs144199154		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169102846	T	T	169102846	3	4	9	1	0	0	0	0	1	0	0	0	715	1058	37	3	775	3	ANXA10	4	169102846	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1439701	169102846	22051430	6154	14305											
DDX60L	91351	broad.mit.edu	37	chr4	169337910	169337910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgacaaggaggagctcCcaaaattttgctccaacttc	7	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169337910	A	A	169337910	3	1	9	1	0	0	0	0	1	0	0	0	4412	624	22	2	2547	2	DDX60L	4	169337910	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	235064	169337910	21816366	6155	14306											
CBR4	84869	broad.mit.edu	37	chr4	169928042	169928042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcttactaaaagaccatcCctacaaaaagaaacagcata	4	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169928042	A	A	169928042	3	1	9	1	0	0	0	0	1	0	0	0	2736	637	22	2	461	2	CBR4	4	169928042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	590132	169928042	21226234	6156	14307											
SH3RF1	57630	broad.mit.edu	37	chr4	170057512	170057512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagacagctcgctgatcCgtgcagcagcagtggggttg	15	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170057512	A	A	170057512	3	1	9	1	0	0	0	0	1	0	0	0	14371	652	23	1	1673	1	SH3RF1	4	170057512	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129470	170057512	21096764	6157	14308											
SH3RF1	57630	broad.mit.edu	37	chr4	170190190	170190190	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaagctcctcgacaccCgagccaacaagagtcctgca	10	15	0	1	rs141769951		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170190190	G	G	170190190	2	3	9	1	0	0	0	0	0	0	0	1	14371	639	23	4		4	SH3RF1	4	170190190	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	132678	170190190	20964086	6158	14309											
NEK1	4750	broad.mit.edu	37	chr4	170327833	170327833	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgacgaacatctcctacGgtgggaacatccataagggt	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170327833	T	T	170327833	2	4	9	1	0	0	0	0	0	0	0	1	10416	1103	39	1		1	NEK1	4	170327833	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	137643	170327833	20826443	6159	14310											
NEK1	4750	broad.mit.edu	37	chr4	170458972	170458972	+	Silent	SNP	G	T	T													attcataccatatgtccttcGgctcgagctttattctgcat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170458972	T	T	170458972	2	4	9	1	0	0	0	0	0	0	0	1	10416	1103	39	1		1	NEK1	4	170458972	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131139	170458972	20695304	6160	14311	88	2									
NEK1	4750	broad.mit.edu	37	chr4	170458977	170458977	+	Silent	SNP	G	T	T													taccatatgtccttcggctcGagctttattctgcatagctt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170458977	T	T	170458977	2	4	9	1	0	0	0	0	0	0	0	1	10416	1066	37	3		3	NEK1	4	170458977	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5	170458977	20695299	6161	14312	88	2									
CLCN3	1182	broad.mit.edu	37	chr4	170613412	170613412	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatgttgcctgttgctgcGgaaatatcttttcctacctc	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170613412	T	T	170613412	4	4	9	1	0	0	0	0	0	1	0	0	3495	1117	39	1	899	1	CLCN3	4	170613412	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	154435	170613412	20540864	6162	14313											
CLCN3	1182	broad.mit.edu	37	chr4	170618603	170618603	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaaatttggaaagtatccCgttctggaagtcattattgt	9	6	2	0	rs142417848		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170618603	A	A	170618603	2	1	9	1	0	0	0	0	0	0	0	1	3495	639	23	1		1	CLCN3	4	170618603	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5191	170618603	20535673	6163	14314											
MFAP3L	9848	broad.mit.edu	37	chr4	170912697	170912697	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagaaggttctgcagtttcGggggaatgttccgccgacag	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170912697	T	T	170912697	2	4	9	1	0	0	0	0	0	0	0	1	9609	1103	39	1		1	MFAP3L	4	170912697	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	294094	170912697	20241579	6164	14315											
MFAP3L	9848	broad.mit.edu	37	chr4	170913248	170913248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctcatcatgcacaggcGggtgatattgaggaccatga	13	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170913248	T	T	170913248	3	4	9	1	0	0	0	0	1	0	0	0	9609	1116	39	1	722	1	MFAP3L	4	170913248	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	551	170913248	20241028	6165	14316											
MFAP3L	9848	broad.mit.edu	37	chr4	170926666	170926666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagaagaactaacatcacGggtgctggctccaaagctcc	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170926666	T	T	170926666	1	4	9	0	1	0	0	0	0	0	0	0	9609	1131	39	1		1	MFAP3L	4	170926666	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13418	170926666	20227610	6166	14317											
AADAT	51166	broad.mit.edu	37	chr4	170999803	170999803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttccatgctcagaagccCattttttagtttgagctcac	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170999803	A	A	170999803	1	1	9	0	1	0	0	0	0	0	0	0	14	609	21	2		2	AADAT	4	170999803	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	73137	170999803	20154473	6167	14318											
AADAT	51166	broad.mit.edu	37	chr4	171010765	171010765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggagagatggtcacccCgtttctcactcatggtccgg	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171010765	A	A	171010765	1	1	9	0	1	0	0	0	0	0	0	0	14	667	23	1		1	AADAT	4	171010765	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10962	171010765	20143511	6168	14319											
GALNTL6	442117	broad.mit.edu	37	chr4	173804012	173804012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattgggtggctatgatcCaggtttagaaatctggggag	16	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173804012	A	A	173804012	3	1	9	1	0	0	0	0	1	0	0	0	6287	594	21	2	1021	2	GALNTL6	4	173804012	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2793247	173804012	17350264	6169	14320											
GALNT7	51809	broad.mit.edu	37	chr4	174219442	174219442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaagacaaaaactgaacCgtatcggtaatcactaaatc	7	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174219442	A	A	174219442	3	1	9	1	0	0	0	0	1	0	0	0	6280	652	23	1	1164	1	GALNT7	4	174219442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	415430	174219442	16934834	6170	14321											
GALNT7	51809	broad.mit.edu	37	chr4	174223255	174223255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagagttcttctttgaattGggtctctatgatccaggtct	10	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174223255	T	T	174223255	3	4	9	1	0	0	0	0	1	0	0	0	6280	1339	47	2	1232	2	GALNT7	4	174223255	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3813	174223255	16931021	6171	14322											
HMGB2	3148	broad.mit.edu	37	chr4	174253366	174253366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgcttcacttttgccCttggcacgatatgcagcaat	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174253366	A	A	174253366	3	1	9	1	0	0	0	0	1	0	0	0	7293	680	24	2	138	2	HMGB2	4	174253366	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30111	174253366	16900910	6172	14323											
HMGB2	3148	broad.mit.edu	37	chr4	174254076	174254076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatttctttgcagtatcccCaatggataggccagggtgtt	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174254076	A	A	174254076	3	1	9	1	0	0	0	0	1	0	0	0	7293	594	21	2	270	2	HMGB2	4	174254076	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	710	174254076	16900200	6173	14324											
HMGB2	3148	broad.mit.edu	37	chr4	174254220	174254220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggttattttaaacttacGgtggccttttaggagcattg	11	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174254220	T	T	174254220	3	4	9	1	0	0	0	0	1	0	0	0	7293	1130	39	1	345	1	HMGB2	4	174254220	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	144	174254220	16900056	6174	14325											
HMGB2	3148	broad.mit.edu	37	chr4	174254772	174254772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtacgaggacattttgcccCgcggcttgttggggtctcct	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174254772	A	A	174254772	3	1	9	1	0	0	0	0	1	0	0	0	7293	652	23	1	616	1	HMGB2	4	174254772	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	552	174254772	16899504	6175	14326											
SAP30	8819	broad.mit.edu	37	chr4	174294613	174294613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacagaagaaagagaaaaGggagtgatgatgatggaggt	16	1	0	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174294613	T	T	174294613	3	4	9	1	0	0	0	0	1	0	0	0	13945	1000	35	2	394	2	SAP30	4	174294613	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39841	174294613	16859663	6176	14327											
SCRG1	11341	broad.mit.edu	37	chr4	174312424	174312424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgacatcaatctgtgtcaGgtcagctactccttccggaa	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174312424	T	T	174312424	3	4	9	1	0	0	0	0	1	0	0	0	14049	991	35	2	162	2	SCRG1	4	174312424	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17811	174312424	16841852	6177	14328											
MORF4	10934	broad.mit.edu	37	chr4	174537309	174537309	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgggacatgggtgcatcGggacaatctgcaagaatttc	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174537309	T	T	174537309	2	4	9	1	0	0	0	0	0	0	0	1	9799	1103	39	1		1	MORF4	4	174537309	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	224885	174537309	16616967	6178	14329											
HPGD	3248	broad.mit.edu	37	chr4	175443027	175443027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacccagggccccctggccGggctgccttcaggttgttgc	14	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175443027	T	T	175443027	1	4	9	0	1	0	0	0	0	0	0	0	7401	1131	39	1		1	HPGD	4	175443027	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	905718	175443027	15711249	6179	14330											
GLRA3	8001	broad.mit.edu	37	chr4	175565035	175565035	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctaatgggaagcaggctcGggagatggtatcaatcttct	13	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175565035	T	T	175565035	2	4	9	1	0	0	0	0	0	0	0	1	6520	1124	39	1		1	GLRA3	4	175565035	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	122008	175565035	15589241	6180	14331											
WDR17	116966	broad.mit.edu	37	chr4	177041191	177041191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcagatggcatacacacCaaaaggggaaagttgtgttt	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177041191	A	A	177041191	3	1	9	1	0	0	0	0	1	0	0	0	17404	595	21	2	567	2	WDR17	4	177041191	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1476156	177041191	14113085	6181	14332											
WDR17	116966	broad.mit.edu	37	chr4	177052829	177052829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcagtgtgttgtttcttGgatggtggagttggacttta	14	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177052829	T	T	177052829	3	4	9	1	0	0	0	0	1	0	0	0	17404	1339	47	2	1136	2	WDR17	4	177052829	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11638	177052829	14101447	6182	14333											
WDR17	116966	broad.mit.edu	37	chr4	177069287	177069287	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatattctgttttcagtacCgttcgaatctgggattatac	7	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177069287	A	A	177069287	2	1	9	1	0	0	0	0	0	0	0	1	17404	639	23	1		1	WDR17	4	177069287	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16458	177069287	14084989	6183	14334											
WDR17	116966	broad.mit.edu	37	chr4	177093644	177093644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacctgaaaaagcccttcCtattggtattagctttgtta	7	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177093644	A	A	177093644	3	1	9	1	0	0	0	0	1	0	0	0	17404	681	24	2	3436	2	WDR17	4	177093644	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24357	177093644	14060632	6184	14335											
SPCS3	60559	broad.mit.edu	37	chr4	177249276	177249276	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataaagtatttgacatctCagtgtttgtcttaaaatttt	5	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177249276	T	T	177249276	1	4	9	0	1	0	0	0	0	0	0	0	15141	841	29	4		4	SPCS3	4	177249276	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	155632	177249276	13905000	6185	14336											
VEGFC	7424	broad.mit.edu	37	chr4	177608595	177608595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggcaggccgaagcccCgctctgcagacacactgaca	11	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608595	A	A	177608595	2	1	9	1	0	0	0	0	0	0	0	1	17279	639	23	1		1	VEGFC	4	177608595	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	359319	177608595	13545681	6186	14337											
VEGFC	7424	broad.mit.edu	37	chr4	177632712	177632712	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacttgtctgtaaacatcCagtttagacatgcatcggca	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177632712	A	A	177632712	2	1	9	1	0	0	0	0	0	0	0	1	17279	581	21	2		2	VEGFC	4	177632712	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24117	177632712	13521564	6187	14338											
NEIL3	55247	broad.mit.edu	37	chr4	178243693	178243693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagtggcgtggaaactttGgggaaggagctctttatgta	14	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178243693	T	T	178243693	3	4	9	1	0	0	0	0	1	0	0	0	10415	1339	47	2	243	2	NEIL3	4	178243693	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	610981	178243693	12910583	6188	14339											
NEIL3	55247	broad.mit.edu	37	chr4	178272608	178272608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttatggactccgtggctcGgaagtcggaagagcactgga	15	8	0	1	rs139121668	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178272608	T	T	178272608	3	4	9	1	0	0	0	0	1	0	0	0	10415	1116	39	1	970	1	NEIL3	4	178272608	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28915	178272608	12881668	6189	14340											
AGA	175	broad.mit.edu	37	chr4	178361416	178361416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataataaataggacctgaacGgtgttcttacccatccatga	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178361416	T	T	178361416	1	4	9	0	1	0	0	0	0	0	0	0	365	1131	39	1		1	AGA	4	178361416	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	88808	178361416	12792860	6190	14341											
ODZ3	55714	broad.mit.edu	37	chr4	183522218	183522218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaccagagtccggcccCgccggctgctttgcccgccg	13	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183522218	A	A	183522218	3	1	9	1	0	0	0	0	1	0	0	0	10931	652	23	1	663	1	ODZ3	4	183522218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5160802	183522218	7632058	6191	14342											
ODZ3	55714	broad.mit.edu	37	chr4	183672998	183672998	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcaacggatccagtcacGggagatctgtacgtttctga	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183672998	T	T	183672998	2	4	9	1	0	0	0	0	0	0	0	1	10931	1103	39	1		1	ODZ3	4	183672998	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	150780	183672998	7481278	6192	14343											
ODZ3	55714	broad.mit.edu	37	chr4	183713820	183713820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacaggcaaattggtcccCtgattgacaggcagattttc	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183713820	A	A	183713820	3	1	9	1	0	0	0	0	1	0	0	0	10931	680	24	2	6093	2	ODZ3	4	183713820	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40822	183713820	7440456	6193	14344											
DCTD	1635	broad.mit.edu	37	chr4	183836579	183836579	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtaatctctttgcctgtGagtatctaagcattctcccg	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183836579	T	T	183836579	1	4	9	0	1	0	0	0	0	0	0	0	4338	1305	45	3		3	DCTD	4	183836579	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	122759	183836579	7317697	6194	14345											
DCTD	1635	broad.mit.edu	37	chr4	183836696	183836696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattccaaatagtcgtccCgtttcttgcaggaaacttca	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183836696	A	A	183836696	3	1	9	1	0	0	0	0	1	0	0	0	4338	652	23	1	530	1	DCTD	4	183836696	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	183836696	7317580	6195	14346											
WWC2	80014	broad.mit.edu	37	chr4	184190205	184190205	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcatccgcccacagaatcCattttattcaatgatgtgtt	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184190205	A	A	184190205	2	1	9	1	0	0	0	0	0	0	0	1	17539	581	21	2		2	WWC2	4	184190205	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	353509	184190205	6964071	6196	14347											
WWC2	80014	broad.mit.edu	37	chr4	184240642	184240642	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgagatgactagagcGggacatcctaccaaatccag	10	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184240642	T	T	184240642	1	4	9	0	1	0	0	0	0	0	0	0	17539	1131	39	1		1	WWC2	4	184240642	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	50437	184240642	6913634	6197	14348											
RWDD4A	201965	broad.mit.edu	37	chr4	184577112	184577112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtaatgcttctagttcCatctgaaataaagaactgaa	8	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184577112	A	A	184577112	3	1	9	1	0	0	0	0	1	0	0	0	13869	594	21	2	563	2	RWDD4A	4	184577112	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	336470	184577112	6577164	6198	14349											
C4orf41	60684	broad.mit.edu	37	chr4	184585209	184585209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgaccatgagtatccCaaatgtagacccaaggtaat	9	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184585209	A	A	184585209	2	1	9	1	0	0	0	0	0	0	0	1	2293	581	21	2		2	C4orf41	4	184585209	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8097	184585209	6569067	6199	14350											
C4orf41	60684	broad.mit.edu	37	chr4	184598623	184598623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttaggaattataggacCgcctataatcttgtacacga	7	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184598623	A	A	184598623	2	1	9	1	0	0	0	0	0	0	0	1	2293	639	23	1		1	C4orf41	4	184598623	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13414	184598623	6555653	6200	14351											
C4orf41	60684	broad.mit.edu	37	chr4	184607719	184607719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggttaacaggatgtgtgtGggtcgtgggtatctggttgt	17	3	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184607719	T	T	184607719	1	4	9	0	1	0	0	0	0	0	0	0	2293	1363	47	2		2	C4orf41	4	184607719	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9096	184607719	6546557	6201	14352											
C4orf41	60684	broad.mit.edu	37	chr4	184614148	184614148	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctctgggcaatgagacGggaagatgtgtggttttaaa	14	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184614148	T	T	184614148	2	4	9	1	0	0	0	0	0	0	0	1	2293	1103	39	1		1	C4orf41	4	184614148	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6429	184614148	6540128	6202	14353											
CASP3	836	broad.mit.edu	37	chr4	185550547	185550547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccacctttcggttaaccCgggtaagaatgtgcataaat	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185550547	A	A	185550547	3	1	9	1	0	0	0	0	1	0	0	0	2698	652	23	1	124	1	CASP3	4	185550547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	936399	185550547	5603729	6203	14354											
CASP3	836	broad.mit.edu	37	chr4	185553538	185553538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgacatctgtaccagacCgagatgtcattccttggaac	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185553538	A	A	185553538	3	1	9	1	0	0	0	0	1	0	0	0	2698	652	23	1	658	1	CASP3	4	185553538	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2991	185553538	5600738	6204	14355											
CCDC111	201973	broad.mit.edu	37	chr4	185606793	185606793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgatatttgtaaatatcGgtggtgtgaaaacattggaa	10	2	0	2	rs138103333		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185606793	T	T	185606793	3	4	9	1	0	0	0	0	1	0	0	0	2774	1116	39	1	1284	1	CCDC111	4	185606793	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53255	185606793	5547483	6205	14356											
ACSL1	2180	broad.mit.edu	37	chr4	185678169	185678169	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaatggacaagtcaaacacGaacgcttccttccctacact	6	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185678169	T	T	185678169	1	4	9	0	1	0	0	0	0	0	0	0	177	1073	37	3		3	ACSL1	4	185678169	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	71376	185678169	5476107	6206	14357											
ACSL1	2180	broad.mit.edu	37	chr4	185678821	185678821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagaccagaatccttccCaagtctcaccatatcttcga	4	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185678821	A	A	185678821	3	1	9	1	0	0	0	0	1	0	0	0	177	594	21	2	180	2	ACSL1	4	185678821	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	652	185678821	5475455	6207	14358											
ACSL1	2180	broad.mit.edu	37	chr4	185705105	185705105	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatatgaaagccattcataGggttggtctggtttccgaga	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185705105	T	T	185705105	2	4	9	1	0	0	0	0	0	0	0	1	177	987	35	2		2	ACSL1	4	185705105	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26284	185705105	5449171	6208	14359											
KIAA1430	57587	broad.mit.edu	37	chr4	186085188	186085188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaaatgcttacttaatGggctatattggccaagagtg	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186085188	T	T	186085188	3	4	9	1	0	0	0	0	1	0	0	0	8302	1348	47	2	140	2	KIAA1430	4	186085188	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	380083	186085188	5069088	6209	14360											
LRP2BP	55805	broad.mit.edu	37	chr4	186288382	186288382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagttcatctgccaatgcGggattcagacgacaagcctt	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186288382	T	T	186288382	2	4	9	1	0	0	0	0	0	0	0	1	9044	1103	39	1		1	LRP2BP	4	186288382	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	203194	186288382	4865894	6210	14361											
LRP2BP	55805	broad.mit.edu	37	chr4	186299342	186299342	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcactggtcaacttcatcCtttttctgcaatgtgtattc	5	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186299342	A	A	186299342	1	1	9	1	0	0	0	0	0	0	0	0	9044	696	24	2		2	LRP2BP	4	186299342	Translation_Start_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	10960	186299342	4854934	6211	14362											
CCDC110	256309	broad.mit.edu	37	chr4	186379866	186379866	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaagtgtctcttgttcCgtttttgccaatctttcttt	7	8	3	2	rs115853860	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186379866	A	A	186379866	2	1	9	1	0	0	0	0	0	0	0	1	2773	639	23	1		1	CCDC110	4	186379866	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80524	186379866	4774410	6212	14363											
PDLIM3	27295	broad.mit.edu	37	chr4	186423501	186423501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctctgggggctttgtgcGggctcttgcgtgggtttcgc	17	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186423501	T	T	186423501	3	4	9	1	0	0	0	0	1	0	0	0	11775	1116	39	1	56	1	PDLIM3	4	186423501	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43635	186423501	4730775	6213	14364											
SORBS2	8470	broad.mit.edu	37	chr4	186541125	186541125	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattttcacatttcctgtccGagttcgttactggtttggga	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186541125	T	T	186541125	1	4	9	0	1	0	0	0	0	0	0	0	15042	1073	37	3		3	SORBS2	4	186541125	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	117624	186541125	4613151	6214	14365											
SORBS2	8470	broad.mit.edu	37	chr4	186541294	186541294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggatgagtaacttctagGggactcacggtctattggaa	13	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186541294	T	T	186541294	3	4	9	1	0	0	0	0	1	0	0	0	15042	1232	43	2	819	2	SORBS2	4	186541294	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	169	186541294	4612982	6215	14366											
SORBS2	8470	broad.mit.edu	37	chr4	186544264	186544264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggatgagttcctctcGggaacatctggcagcagctc	12	12	3	1	rs149773204	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186544264	T	T	186544264	2	4	9	1	0	0	0	0	0	0	0	1	15042	1103	39	1		1	SORBS2	4	186544264	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2970	186544264	4610012	6216	14367											
SORBS2	8470	broad.mit.edu	37	chr4	186544972	186544972	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggtggttctagggttacGggagacagcatgtcatcccc	14	10	2	1	rs148423116		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186544972	T	T	186544972	2	4	9	1	0	0	0	0	0	0	0	1	15042	1103	39	1		1	SORBS2	4	186544972	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	708	186544972	4609304	6217	14368											
SORBS2	8470	broad.mit.edu	37	chr4	186548066	186548066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgatcctgggaggtccactCggcctgggctagtcctgctc	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186548066	A	A	186548066	3	1	9	1	0	0	0	0	1	0	0	0	15042	884	31	3	2500	3	SORBS2	4	186548066	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3094	186548066	4606210	6218	14369											
TLR3	7098	broad.mit.edu	37	chr4	187005225	187005225	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaagggactttgaggcGggtgtttttgaactagaagc	15	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187005225	T	T	187005225	2	4	9	1	0	0	0	0	0	0	0	1	16075	1103	39	1		1	TLR3	4	187005225	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	457159	187005225	4149051	6219	14370											
CYP4V2	285440	broad.mit.edu	37	chr4	187130126	187130126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgttcctttatttgccCgtagtgttagtgaagattgt	9	7	1	2	rs138444697		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187130126	A	A	187130126	3	1	9	1	0	0	0	0	1	0	0	0	4225	652	23	1	1232	1	CYP4V2	4	187130126	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	124901	187130126	4024150	6220	14371											
KLKB1	3818	broad.mit.edu	37	chr4	187172712	187172712	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgtgacttttgttaaaGgagtgaatgtttgccaagag	12	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187172712	T	T	187172712	4	4	9	1	0	0	0	0	0	1	0	0	8483	1001	35	2	970	2	KLKB1	4	187172712	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42586	187172712	3981564	6221	14372											
KLKB1	3818	broad.mit.edu	37	chr4	187178477	187178477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaaataacccaacggatGgtctgtgctggctataaaga	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187178477	T	T	187178477	3	4	9	1	0	0	0	0	1	0	0	0	8483	1348	47	2	1733	2	KLKB1	4	187178477	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5765	187178477	3975799	6222	14373											
F11	2160	broad.mit.edu	37	chr4	187209615	187209615	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgttctagggagattcGggaggccctctgtcctgcaa	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187209615	T	T	187209615	2	4	9	1	0	0	0	0	0	0	0	1	5380	1103	39	1		1	F11	4	187209615	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31138	187209615	3944661	6223	14374											
F11	2160	broad.mit.edu	37	chr4	187209638	187209638	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggccctctgtcctgcaaacAcaatgaggtctggcatctgg	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187209638	T	T	187209638	3	4	9	1	0	0	0	0	1	0	0	0	5380	159	6	5	1802	5	F11	4	187209638	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	23	187209638	3944638	6224	14375											
FAT1	2195	broad.mit.edu	37	chr4	187510040	187510040	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcgaggggataaaaattGggcaaatactgattcaagtt	10	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187510040	T	T	187510040	2	4	9	1	0	0	0	0	0	0	0	1	5746	1335	47	2		2	FAT1	4	187510040	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	300402	187510040	3644236	6225	14376											
FAT1	2195	broad.mit.edu	37	chr4	187510247	187510247	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcctccagggtaatagtcCgtatcgatggcgtttggatc	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187510247	A	A	187510247	2	1	9	1	0	0	0	0	0	0	0	1	5746	639	23	1		1	FAT1	4	187510247	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	207	187510247	3644029	6226	14377											
FAT1	2195	broad.mit.edu	37	chr4	187516905	187516905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttcagacaggctttccCgggcactgtatggctgggaa	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187516905	A	A	187516905	3	1	9	1	0	0	0	0	1	0	0	0	5746	652	23	1	698	1	FAT1	4	187516905	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6658	187516905	3637371	6227	14378											
FAT1	2195	broad.mit.edu	37	chr4	187539468	187539468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctccaacttcagtctccCgctctgtctgtcaatcacaa	4	16	7	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187539468	A	A	187539468	3	1	9	1	0	0	0	0	1	0	0	0	5746	652	23	1	5566	1	FAT1	4	187539468	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22563	187539468	3614808	6228	14379											
FAT1	2195	broad.mit.edu	37	chr4	187539564	187539564	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcccactatgttctgctcGgatgagatctatctctgttc	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187539564	T	T	187539564	2	4	9	1	0	0	0	0	0	0	0	1	5746	1124	39	1		1	FAT1	4	187539564	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96	187539564	3614712	6229	14380											
FAT1	2195	broad.mit.edu	37	chr4	187539924	187539924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttagcagcactggaccCgatattcacttcgtatttgg	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187539924	A	A	187539924	3	1	9	1	0	0	0	0	1	0	0	0	5746	652	23	1	6022	1	FAT1	4	187539924	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	360	187539924	3614352	6230	14381											
FAT1	2195	broad.mit.edu	37	chr4	187540189	187540189	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataccagaatccccatcCgtagttttcacctccatcac	3	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187540189	A	A	187540189	2	1	9	1	0	0	0	0	0	0	0	1	5746	639	23	1		1	FAT1	4	187540189	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	265	187540189	3614087	6231	14382											
FAT1	2195	broad.mit.edu	37	chr4	187541782	187541782	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaattctctttcactacCgcagagtagacatcctgggt	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187541782	A	A	187541782	2	1	9	1	0	0	0	0	0	0	0	1	5746	639	23	1		1	FAT1	4	187541782	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1593	187541782	3612494	6232	14383											
FAT1	2195	broad.mit.edu	37	chr4	187557825	187557825	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgaaaaatttgccatgctCattcccgtcttcgatgctgt	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187557825	A	A	187557825	4	1	9	1	0	0	0	0	0	1	0	0	5746	835	29	3	9972	3	FAT1	4	187557825	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16043	187557825	3596451	6233	14384											
FAT1	2195	broad.mit.edu	37	chr4	187557947	187557947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctggcttttcccgctcaGggagtctgattttgtagaac	12	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187557947	T	T	187557947	3	4	9	1	0	0	0	0	1	0	0	0	5746	1000	35	2	10094	2	FAT1	4	187557947	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	122	187557947	3596329	6234	14385											
FAT1	2195	broad.mit.edu	37	chr4	187558050	187558050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgatttggggggactacCattgtctgtcacagtaacct	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187558050	A	A	187558050	3	1	9	1	0	0	0	0	1	0	0	0	5746	594	21	2	10197	2	FAT1	4	187558050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	187558050	3596226	6235	14386											
FAT1	2195	broad.mit.edu	37	chr4	187584691	187584691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaagaggcacgacaccCtgatcggttgcaaagactgt	12	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187584691	A	A	187584691	3	1	9	1	0	0	0	0	1	0	0	0	5746	680	24	2	10524	2	FAT1	4	187584691	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26641	187584691	3569585	6236	14387											
FAT1	2195	broad.mit.edu	37	chr4	187627862	187627862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcttctttcactgtcccCttttccacaaagctggaaaa	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187627862	A	A	187627862	3	1	9	1	0	0	0	0	1	0	0	0	5746	680	24	2	10750	2	FAT1	4	187627862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43171	187627862	3526414	6237	14388			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187627886	187627886	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacaaagctggaaaacacGggtgggtgcaggttctcatt	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187627886	T	T	187627886	2	4	9	1	0	0	0	0	0	0	0	1	5746	1103	39	1		1	FAT1	4	187627886	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	187627886	3526390	6238	14389			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187628172	187628172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccttctggaagatcctctCggactttcacacgataatta	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187628172	A	A	187628172	3	1	9	1	0	0	0	0	1	0	0	0	5746	884	31	3	11060	3	FAT1	4	187628172	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	286	187628172	3526104	6239	14390			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187628581	187628581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacgccacgcagccttctGgggtatcccaaggtcataga	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187628581	T	T	187628581	3	4	9	1	0	0	0	0	1	0	0	0	5746	1357	47	2	11469	2	FAT1	4	187628581	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	409	187628581	3525695	6240	14391			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187629496	187629496	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatactgtatgtcacgtaccCgttctcaccctcatcagggt	8	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187629496	A	A	187629496	3	1	9	1	0	0	0	0	1	0	0	0	5746	652	23	1	12384	1	FAT1	4	187629496	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	915	187629496	3524780	6241	14392			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187629589	187629589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagctttgtacgctgtctGggtaaattcagggggattgc	14	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187629589	T	T	187629589	3	4	9	1	0	0	0	0	1	0	0	0	5746	1357	47	2	12477	2	FAT1	4	187629589	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	93	187629589	3524687	6242	14393			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187629946	187629946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttaacagaagagaactGgggcggagttcctttatctt	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187629946	T	T	187629946	3	4	9	1	0	0	0	0	1	0	0	0	5746	1357	47	2	12834	2	FAT1	4	187629946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	357	187629946	3524330	6243	14394			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187630008	187630008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgaaaggatgactgtccCaatcaatgccaccgatggct	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187630008	A	A	187630008	3	1	9	1	0	0	0	0	1	0	0	0	5746	595	21	2	12896	2	FAT1	4	187630008	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	187630008	3524268	6244	14395			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187630249	187630249	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attggcctgttcgatgtgcaCcgttagcttggccatgctgc	12	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187630249	T	T	187630249	3	4	9	1	0	0	0	0	1	0	0	0	5746	507	18	4	13137	4	FAT1	4	187630249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	241	187630249	3524027	6245	14396			14	17		10	10	2668	N	G_C	3.51891e-05
FAT1	2195	broad.mit.edu	37	chr4	187630529	187630529	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaacgctgtatgaggtGggtgagaataacggtctcaa	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187630529	T	T	187630529	2	4	9	1	0	0	0	0	0	0	0	1	5746	1335	47	2		2	FAT1	4	187630529	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	280	187630529	3523747	6246	14397			14	17		10	10	2668	N	G_C	3.51891e-05
ZFP42	132625	broad.mit.edu	37	chr4	188924604	188924604	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcctcattcatggtcccCgagaccacgtctgtgcggaa	9	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188924604	A	A	188924604	2	1	9	1	0	0	0	0	0	0	0	1	17776	644	23	1		1	ZFP42	4	188924604	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1294075	188924604	2229672	6247	14398											
TRIML2	205860	broad.mit.edu	37	chr4	189012706	189012706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtagaatgatatctgccCgtgttcgcagtcaaggaaaa	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189012706	A	A	189012706	3	1	9	1	0	0	0	0	1	0	0	0	16676	652	23	1	182	1	TRIML2	4	189012706	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88102	189012706	2141570	6248	14399											
TRIML2	205860	broad.mit.edu	37	chr4	189012726	189012726	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgttcgcagtcaaggaaaAcgccaactgtgtccaacttc	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189012726	T	T	189012726	3	4	9	1	0	0	0	0	1	0	0	0	16676	43	2	5	202	5	TRIML2	4	189012726	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	20	189012726	2141550	6249	14400											
TRIML1	339976	broad.mit.edu	37	chr4	189068016	189068016	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccacagctaatgcctatctCgtgttgtcggaggatctgaa	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189068016	A	A	189068016	2	1	9	1	0	0	0	0	0	0	0	1	16675	871	31	3		3	TRIML1	4	189068016	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55290	189068016	2086260	6250	14401											
TRIML1	339976	broad.mit.edu	37	chr4	189068073	189068073	+	Silent	SNP	C	A	A													ggaagcagacagcagctaccCgacaacccggaaagatttga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189068073	A	A	189068073	2	1	9	1	0	0	0	0	0	0	0	1	16675	639	23	1		1	TRIML1	4	189068073	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	189068073	2086203	6251	14402	89	2									
TRIML1	339976	broad.mit.edu	37	chr4	189068081	189068081	+	Missense_Mutation	SNP	C	A	A													acagcagctacccgacaaccCggaaagatttgaccagtctg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189068081	A	A	189068081	3	1	9	1	0	0	0	0	1	0	0	0	16675	652	23	1	984	1	TRIML1	4	189068081	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	189068081	2086195	6252	14403	89	2									
TRIML1	339976	broad.mit.edu	37	chr4	189068226	189068226	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaaaggggaatctcccCaagccacctggggacctgtt	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189068226	A	A	189068226	2	1	9	1	0	0	0	0	0	0	0	1	16675	581	21	2		2	TRIML1	4	189068226	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	145	189068226	2086050	6253	14404											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903847	190903847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaaactgctctgagaccCgcttgagttcctggacggct	11	12	1	2	rs147538317	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190903847	A	A	190903847	3	1	9	1	0	0	0	0	1	0	0	0	16885	652	23	1	171	1	TUBB4Q	4	190903847	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1835621	190903847	250429	6254	14405											
PLEKHG4B	153478	broad.mit.edu	37	chr5	143262	143262	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccggcagccacacccCgagcaagaagggtggccacc	12	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143262	A	A	143262	2	1	9	1	0	0	0	0	0	0	0	1	12167	639	23	1		1	PLEKHG4B	5	143262	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08		143262	180771998	6255	14406											
PLEKHG4B	153478	broad.mit.edu	37	chr5	172940	172940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagctaacacatttagacGgagacagtgacctgtgccac	10	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172940	T	T	172940	1	4	9	0	1	0	0	0	0	0	0	0	12167	1131	39	1		1	PLEKHG4B	5	172940	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29678	172940	180742320	6256	14407											
CCDC127	133957	broad.mit.edu	37	chr5	205824	205824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttgcatcacctgggccCgttcctgttccagaagcttc	8	14	2	1	rs146664105	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205824	A	A	205824	3	1	9	1	0	0	0	0	1	0	0	0	2789	652	23	1	415	1	CCDC127	5	205824	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32884	205824	180709436	6257	14408											
SDHA	6389	broad.mit.edu	37	chr5	223624	223624	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgttgcaaacaggaaccCgaggttttcacttcactgtt	9	10	2	0	rs142441643	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223624	A	A	223624	2	1	9	1	0	0	0	0	0	0	0	1	14076	644	23	1		1	SDHA	5	223624	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17800	223624	180691636	6258	14409											
SDHA	6389	broad.mit.edu	37	chr5	224438	224438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcatgtttggcatagtGgaacatgtgattgacaggtg	12	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224438	T	T	224438	1	4	9	0	1	0	0	0	0	0	0	0	14076	1363	47	2		2	SDHA	5	224438	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	814	224438	180690822	6259	14410											
SDHA	6389	broad.mit.edu	37	chr5	224654	224654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtaagagaaaggtgcccCactgtgctcccactccgtgc	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224654	A	A	224654	1	1	9	0	1	0	0	0	0	0	0	0	14076	609	21	2		2	SDHA	5	224654	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	216	224654	180690606	6260	14411											
SDHA	6389	broad.mit.edu	37	chr5	233750	233750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccatgactctggagatcCgagaaggaaggtgcgtgtga	16	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233750	A	A	233750	2	1	9	1	0	0	0	0	0	0	0	1	14076	644	23	1		1	SDHA	5	233750	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9096	233750	180681510	6261	14412											
SDHA	6389	broad.mit.edu	37	chr5	236687	236687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttggtcgggcatgtgccCtgagcatcgaagagtcatgc	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236687	A	A	236687	3	1	9	1	0	0	0	0	1	0	0	0	14076	680	24	2	1443	2	SDHA	5	236687	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2937	236687	180678573	6262	14413											
SDHA	6389	broad.mit.edu	37	chr5	240567	240567	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggaagcataagaacatcGgaactgcgactcagcatgca	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240567	T	T	240567	2	4	9	1	0	0	0	0	0	0	0	1	14076	1103	39	1		1	SDHA	5	240567	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3880	240567	180674693	6263	14414											
SDHA	6389	broad.mit.edu	37	chr5	256513	256513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgactgtgccaccgtccCgccagccattcgctcctact	9	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	256513	A	A	256513	3	1	9	1	0	0	0	0	1	0	0	0	14076	652	23	1	2031	1	SDHA	5	256513	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15946	256513	180658747	6264	14415											
PDCD6	10016	broad.mit.edu	37	chr5	289067	289067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaattcttctgtttcacGgcagtcagaagaaccactac	6	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	289067	T	T	289067	1	4	9	0	1	0	0	0	0	0	0	0	11717	1131	39	1		1	PDCD6	5	289067	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32554	289067	180626193	6265	14416											
PDCD6	10016	broad.mit.edu	37	chr5	289116	289116	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcgttttcattaccttcGgaatgtagtaaatctttctc	5	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	289116	T	T	289116	1	4	9	0	1	0	0	0	0	0	0	0	11717	1131	39	1		1	PDCD6	5	289116	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49	289116	180626144	6266	14417											
PDCD6	10016	broad.mit.edu	37	chr5	289563	289563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttctgtacgcgctgccGggtacaacggctttctttgt	10	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	289563	T	T	289563	1	4	9	0	1	0	0	0	0	0	0	0	11717	1131	39	1		1	PDCD6	5	289563	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	447	289563	180625697	6267	14418											
AHRR	57491	broad.mit.edu	37	chr5	306929	306929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattttggaaccttggagcCgttgaagttctttaaacctt	8	8	2	1	rs147701506	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	306929	A	A	306929	1	1	9	0	1	0	0	0	0	0	0	0	417	667	23	1		1	AHRR	5	306929	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	17366	306929	180608331	6268	14419											
AHRR	57491	broad.mit.edu	37	chr5	353909	353909	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accgggaccgcctcaacgccGagttggaccacctggccagc	12	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	353909	T	T	353909	4	4	9	1	0	0	0	0	0	1	0	0	417	1059	37	3	149	3	AHRR	5	353909	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46980	353909	180561351	6269	14420											
C5orf55	116349	broad.mit.edu	37	chr5	442811	442811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgacagacgtttgattccCaaccttctccgctttggttt	7	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	442811	A	A	442811	3	1	9	1	0	0	0	0	1	0	0	0	2334	594	21	2	236	2	C5orf55	5	442811	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88902	442811	180472449	6270	14421											
C5orf55	116349	broad.mit.edu	37	chr5	442850	442850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcgtttactgaatgccCggcgcccacctcagtccgcg	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	442850	A	A	442850	3	1	9	1	0	0	0	0	1	0	0	0	2334	652	23	1	275	1	C5orf55	5	442850	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	442850	180472410	6271	14422											
EXOC3	11336	broad.mit.edu	37	chr5	453773	453773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgtcaggatcattgaaaGggaagagaaaattgacaggc	13	4	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	453773	T	T	453773	3	4	9	1	0	0	0	0	1	0	0	0	5345	1000	35	2	663	2	EXOC3	5	453773	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10923	453773	180461487	6272	14423											
EXOC3	11336	broad.mit.edu	37	chr5	462354	462354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagccagcccagcatggacGggattttagacgccatcgcg	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	462354	T	T	462354	3	4	9	1	0	0	0	0	1	0	0	0	5345	1116	39	1	1615	1	EXOC3	5	462354	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8581	462354	180452906	6273	14424											
SLC9A3	6550	broad.mit.edu	37	chr5	481641	481641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggatgtttccagaagccGggctgtgcgacaccgccggg	17	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	481641	T	T	481641	1	4	9	0	1	0	0	0	0	0	0	0	14827	1131	39	1		1	SLC9A3	5	481641	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19287	481641	180433619	6274	14425											
CEP72	55722	broad.mit.edu	37	chr5	640629	640629	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggctctggagagtaagtcCctgcaaagccgccttgctga	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	640629	G	G	640629	2	3	9	1	0	0	0	0	0	0	0	1	3290	610	22	4		4	CEP72	5	640629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	158988	640629	180274631	6275	14426											
ZDHHC11	79844	broad.mit.edu	37	chr5	814894	814894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaagtgtagatatactcGgggcatcatctgcttcctgt	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	814894	T	T	814894	3	4	9	1	0	0	0	0	1	0	0	0	17727	1116	39	1	83	1	ZDHHC11	5	814894	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	174265	814894	180100366	6276	14427											
ZDHHC11	79844	broad.mit.edu	37	chr5	840677	840677	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaagtccagcaggagcacGagcatcccgatgatcacgac	11	12	1	2	rs147138093		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	840677	T	T	840677	2	4	9	1	0	0	0	0	0	0	0	1	17727	1045	37	3		3	ZDHHC11	5	840677	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25783	840677	180074583	6277	14428											
BRD9	65980	broad.mit.edu	37	chr5	889145	889145	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaacttaccttaaattcCgtaactgacttgtattcatt	4	8	1	1	rs143136479		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	889145	A	A	889145	2	1	9	1	0	0	0	0	0	0	0	1	1516	639	23	1		1	BRD9	5	889145	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48468	889145	180026115	6278	14429											
TRIP13	9319	broad.mit.edu	37	chr5	914576	914576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctgtacttctgtctccCcagtgtcagatcatataccc	6	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	914576	A	A	914576	1	1	9	0	1	0	0	0	0	0	0	0	16682	638	22	2		2	TRIP13	5	914576	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25431	914576	180000684	6279	14430											
SLC12A7	10723	broad.mit.edu	37	chr5	1079553	1079553	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccaggatggtccccgtGgggatggacttctgtgcatc	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1079553	T	T	1079553	2	4	9	1	0	0	0	0	0	0	0	1	14501	1335	47	2		2	SLC12A7	5	1079553	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	164977	1079553	179835707	6280	14431											
SLC12A7	10723	broad.mit.edu	37	chr5	1079601	1079601	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccggaccggtttgaaccCgccatgatacctgtgaacat	9	14	0	3	rs141843005	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1079601	A	A	1079601	2	1	9	1	0	0	0	0	0	0	0	1	14501	639	23	1		1	SLC12A7	5	1079601	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	1079601	179835659	6281	14432											
SLC6A19	340024	broad.mit.edu	37	chr5	1217003	1217003	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgcaacgcctccgacccCgcggcctacgcgcagctggt	13	18	0	0	rs149388719		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1217003	A	A	1217003	2	1	9	1	0	0	0	0	0	0	0	1	14796	639	23	1		1	SLC6A19	5	1217003	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	137402	1217003	179698257	6282	14433											
SLC6A18	348932	broad.mit.edu	37	chr5	1239675	1239675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaagttacaactcgccCaggtaggcagtcgggctcag	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1239675	A	A	1239675	2	1	9	1	0	0	0	0	0	0	0	1	14795	581	21	2		2	SLC6A18	5	1239675	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22672	1239675	179675585	6283	14434											
SLC6A18	348932	broad.mit.edu	37	chr5	1239728	1239728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctttggggagacgccCgagcacttcctgatctcagg	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1239728	A	A	1239728	1	1	9	0	1	0	0	0	0	0	0	0	14795	667	23	1		1	SLC6A18	5	1239728	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	1239728	179675532	6284	14435											
SLC6A18	348932	broad.mit.edu	37	chr5	1244751	1244751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacattgcgtggatgaccGggaggcggcccagcccctac	14	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1244751	T	T	1244751	3	4	9	1	0	0	0	0	1	0	0	0	14795	1116	39	1	1567	1	SLC6A18	5	1244751	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5023	1244751	179670509	6285	14436											
TERT	7015	broad.mit.edu	37	chr5	1278712	1278712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctagacacattcatatccCagagacacacatcctggaca	5	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1278712	A	A	1278712	1	1	9	0	1	0	0	0	0	0	0	0	15886	609	21	2		2	TERT	5	1278712	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33961	1278712	179636548	6286	14437											
TERT	7015	broad.mit.edu	37	chr5	1278814	1278814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctggaccacggcatacCgacgcacgcagtacgtgttc	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1278814	A	A	1278814	3	1	9	1	0	0	0	0	1	0	0	0	15886	652	23	1	1214	1	TERT	5	1278814	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	1278814	179636446	6287	14438											
TERT	7015	broad.mit.edu	37	chr5	1278864	1278864	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgctggcgatgacctcCgtgagcctgtcctgggggat	15	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1278864	A	A	1278864	2	1	9	1	0	0	0	0	0	0	0	1	15886	639	23	1		1	TERT	5	1278864	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	1278864	179636396	6288	14439											
TERT	7015	broad.mit.edu	37	chr5	1280287	1280287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaccctcttttctctgcGgaacgttctggctcccacga	8	16	3	0	rs147521473		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1280287	T	T	1280287	3	4	9	1	0	0	0	0	1	0	0	0	15886	1116	39	1	1514	1	TERT	5	1280287	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1423	1280287	179634973	6289	14440											
TERT	7015	broad.mit.edu	37	chr5	1282621	1282621	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttgaaacgtggtctcCgtgacataaaagaaagacct	8	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1282621	A	A	1282621	2	1	9	1	0	0	0	0	0	0	0	1	15886	639	23	1		1	TERT	5	1282621	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2334	1282621	179632639	6290	14441											
CLPTM1L	81037	broad.mit.edu	37	chr5	1322992	1322992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaagcacatggactcacCgttgacgaagctgttgatta	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1322992	A	A	1322992	3	1	9	1	0	0	0	0	1	0	0	0	3587	666	23	1	321	1	CLPTM1L	5	1322992	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40371	1322992	179592268	6291	14442											
SLC6A3	6531	broad.mit.edu	37	chr5	1394848	1394848	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcttcgtctctgctccCtctacaccttgagccagtgg	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1394848	A	A	1394848	1	1	9	0	1	0	0	0	0	0	0	0	14799	696	24	2		2	SLC6A3	5	1394848	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	71856	1394848	179520412	6292	14443											
SLC6A3	6531	broad.mit.edu	37	chr5	1421981	1421981	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcccaattggtgaccccCgagcctcaccttccctgagg	10	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1421981	A	A	1421981	1	1	9	0	1	0	0	0	0	0	0	0	14799	667	23	1		1	SLC6A3	5	1421981	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	27133	1421981	179493279	6293	14444											
LPCAT1	79888	broad.mit.edu	37	chr5	1489889	1489889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttccgttggactgcgccCgtctcttgatttcttctact	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1489889	A	A	1489889	3	1	9	1	0	0	0	0	1	0	0	0	8997	652	23	1	1070	1	LPCAT1	5	1489889	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67908	1489889	179425371	6294	14445											
LPCAT1	79888	broad.mit.edu	37	chr5	1489938	1489938	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagaatcctggtctgaccGggacacgaacacaggccgta	13	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1489938	T	T	1489938	2	4	9	1	0	0	0	0	0	0	0	1	8997	1115	39	1		1	LPCAT1	5	1489938	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	49	1489938	179425322	6295	14446											
NDUFS6	4726	broad.mit.edu	37	chr5	1814556	1814556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggggagctcttggccaccCaaaagtgtatataaacttgg	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1814556	A	A	1814556	3	1	9	1	0	0	0	0	1	0	0	0	10391	594	21	2	300	2	NDUFS6	5	1814556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	324618	1814556	179100704	6296	14447											
IRX4	50805	broad.mit.edu	37	chr5	1880922	1880922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccccatgcgcagatccCgaaccatccttggaatcaaa	8	15	1	1	rs138268066		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1880922	A	A	1880922	2	1	9	1	0	0	0	0	0	0	0	1	7916	639	23	1		1	IRX4	5	1880922	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66366	1880922	179034338	6297	14448											
IRX2	153572	broad.mit.edu	37	chr5	2749742	2749742	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggtaggggttcttgcGgtgctcgttgagccaggcct	19	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2749742	T	T	2749742	3	4	9	1	0	0	0	0	1	0	0	0	7914	1116	39	1	1018	1	IRX2	5	2749742	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	868820	2749742	178165518	6298	14449											
ADAMTS16	170690	broad.mit.edu	37	chr5	5209169	5209169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcctttggttactctacGggcagttactagtagctcat	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5209169	T	T	5209169	1	4	9	0	1	0	0	0	0	0	0	0	261	1131	39	1		1	ADAMTS16	5	5209169	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2459427	5209169	175706091	6299	14450											
ADAMTS16	170690	broad.mit.edu	37	chr5	5237159	5237159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaaataaagtcaaagatGggactccatgctcggaggat	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5237159	T	T	5237159	3	4	9	1	0	0	0	0	1	0	0	0	261	1348	47	2	2155	2	ADAMTS16	5	5237159	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27990	5237159	175678101	6300	14451											
KIAA0947	23379	broad.mit.edu	37	chr5	5457826	5457826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgatgtcatcacctcaccCgggttccttaccgtcttcat	6	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5457826	A	A	5457826	3	1	9	1	0	0	0	0	1	0	0	0	8272	652	23	1	1119	1	KIAA0947	5	5457826	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	220667	5457826	175457434	6301	14452											
KIAA0947	23379	broad.mit.edu	37	chr5	5457838	5457838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcacccgggttccttacCgtcttcatttgcacctgtga	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5457838	A	A	5457838	3	1	9	1	0	0	0	0	1	0	0	0	8272	652	23	1	1131	1	KIAA0947	5	5457838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	5457838	175457422	6302	14453											
KIAA0947	23379	broad.mit.edu	37	chr5	5457889	5457889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatttgaattaccaagtGggtacattgtctatcctaat	7	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5457889	T	T	5457889	1	4	9	0	1	0	0	0	0	0	0	0	8272	1363	47	2		2	KIAA0947	5	5457889	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	5457889	175457371	6303	14454											
KIAA0947	23379	broad.mit.edu	37	chr5	5460963	5460963	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaccattcataaactcactCgaggtctatgcattgagaga	8	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5460963	A	A	5460963	2	1	9	1	0	0	0	0	0	0	0	1	8272	876	31	3		3	KIAA0947	5	5460963	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3074	5460963	175454297	6304	14455											
KIAA0947	23379	broad.mit.edu	37	chr5	5461097	5461097	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaatctgaaggaaaaacCgtattgtctaaaatgatggg	11	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5461097	A	A	5461097	2	1	9	1	0	0	0	0	0	0	0	1	8272	639	23	1		1	KIAA0947	5	5461097	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	5461097	175454163	6305	14456											
KIAA0947	23379	broad.mit.edu	37	chr5	5464412	5464412	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccactgtctccactgatatcGagttctagtccttcctcacc	5	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5464412	T	T	5464412	2	4	9	1	0	0	0	0	0	0	0	1	8272	1045	37	3		3	KIAA0947	5	5464412	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3315	5464412	175450848	6306	14457											
KIAA0947	23379	broad.mit.edu	37	chr5	5464767	5464767	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatcctcaaagggaatattCaactcacacgaggtccgcct	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5464767	T	T	5464767	4	4	9	1	0	0	0	0	0	1	0	0	8272	827	29	4	5370	4	KIAA0947	5	5464767	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	355	5464767	175450493	6307	14458											
NSUN2	54888	broad.mit.edu	37	chr5	6600022	6600022	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgaggggtgtgggccccCgctgccttgggcctgctcac	17	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6600022	A	A	6600022	1	1	9	0	1	0	0	0	0	0	0	0	10773	667	23	1		1	NSUN2	5	6600022	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1135255	6600022	174315238	6308	14459											
NSUN2	54888	broad.mit.edu	37	chr5	6600060	6600060	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccggggtggatggaccccCgccgggtcacagcctgctgt	15	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6600060	A	A	6600060	2	1	9	1	0	0	0	0	0	0	0	1	10773	639	23	1		1	NSUN2	5	6600060	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	6600060	174315200	6309	14460											
NSUN2	54888	broad.mit.edu	37	chr5	6602608	6602609	+	Nonsense_Mutation	DNP	CC	AA	AA													atacttcagcacgatgcttcCctttgctggaaaagaaacag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6602609	AA	AA	6602608	4	1	9	1	0	0	0	0	0	1	0	0	10773	632	22	2	348	2	NSUN2	5	6602608	Nonsense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	2548	6602608	174312652	6310	14461											
NSUN2	54888	broad.mit.edu	37	chr5	6607389	6607389	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttctgtgtcaccagttcCtgtgaatgacggactttcca	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6607389	A	A	6607389	4	1	9	1	0	0	0	0	0	1	0	0	10773	690	24	2	899	2	NSUN2	5	6607389	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4781	6607389	174307871	6311	14462											
NSUN2	54888	broad.mit.edu	37	chr5	6607400	6607400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagttcctgtgaatgacGgactttccagcttagaggga	11	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6607400	T	T	6607400	3	4	9	1	0	0	0	0	1	0	0	0	10773	1116	39	1	910	1	NSUN2	5	6607400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	6607400	174307860	6312	14463											
NSUN2	54888	broad.mit.edu	37	chr5	6607434	6607434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggatctgtgggtttccCttctgtgagatctgcagggc	15	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6607434	A	A	6607434	3	1	9	1	0	0	0	0	1	0	0	0	10773	681	24	2	944	2	NSUN2	5	6607434	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	6607434	174307826	6313	14464											
NSUN2	54888	broad.mit.edu	37	chr5	6611183	6611183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctgtaaaccactgccCatctttcgtcattacctgca	5	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6611183	A	A	6611183	3	1	9	1	0	0	0	0	1	0	0	0	10773	594	21	2	1228	2	NSUN2	5	6611183	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3749	6611183	174304077	6314	14465											
NSUN2	54888	broad.mit.edu	37	chr5	6616945	6616945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagccagctgttcagcccCgcgtgttgcaatccgcagct	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6616945	A	A	6616945	3	1	9	1	0	0	0	0	1	0	0	0	10773	652	23	1	1431	1	NSUN2	5	6616945	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5762	6616945	174298315	6315	14466											
NSUN2	54888	broad.mit.edu	37	chr5	6631962	6631962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatcccaaataaatattcGgcatgaagcactgtggtacc	7	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6631962	T	T	6631962	1	4	9	0	1	0	0	0	0	0	0	0	10773	1131	39	1		1	NSUN2	5	6631962	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15017	6631962	174283298	6316	14467											
SRD5A1	6715	broad.mit.edu	37	chr5	6662997	6662997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagtggtgtggctatgccCtggccagctggtctgtccaa	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6662997	A	A	6662997	3	1	9	1	0	0	0	0	1	0	0	0	15256	680	24	2	645	2	SRD5A1	5	6662997	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31035	6662997	174252263	6317	14468											
PAPD7	11044	broad.mit.edu	37	chr5	6748667	6748667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagccatgctgtgtcacCgctggccaggtcctatccaa	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6748667	A	A	6748667	3	1	9	1	0	0	0	0	1	0	0	0	11520	652	23	1	826	1	PAPD7	5	6748667	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85670	6748667	174166593	6318	14469											
PAPD7	11044	broad.mit.edu	37	chr5	6753122	6753122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcagcgtcccccaaccCgctctcgagccctcatctgt	6	21	4	0	rs143141039		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6753122	A	A	6753122	3	1	9	1	0	0	0	0	1	0	0	0	11520	652	23	1	1448	1	PAPD7	5	6753122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4455	6753122	174162138	6319	14470											
ADCY2	108	broad.mit.edu	37	chr5	7396614	7396614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgccgtcttcttcgcgctcGggctggtgagtggcctcccc	13	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7396614	T	T	7396614	3	4	9	1	0	0	0	0	1	0	0	0	294	1116	39	1	207	1	ADCY2	5	7396614	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	643492	7396614	173518646	6320	14471											
ADCY2	108	broad.mit.edu	37	chr5	7706730	7706730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggagtgatctcctgccatAggaaggtttatggtcatttc	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7706730	T	T	7706730	1	4	9	0	1	0	0	0	0	0	0	0	294	435	15	5		5	ADCY2	5	7706730	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	310116	7706730	173208530	6321	14472											
ADCY2	108	broad.mit.edu	37	chr5	7706846	7706846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatcatgatcttacttccCttctctttaggaaagtgagg	8	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7706846	A	A	7706846	1	1	9	0	1	0	0	0	0	0	0	0	294	696	24	2		2	ADCY2	5	7706846	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	116	7706846	173208414	6322	14473											
ADCY2	108	broad.mit.edu	37	chr5	7707948	7707948	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctactttgtgatcaacccCaaggtcagtatcattgtaaa	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7707948	A	A	7707948	2	1	9	1	0	0	0	0	0	0	0	1	294	581	21	2		2	ADCY2	5	7707948	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1102	7707948	173207312	6323	14474											
ADCY2	108	broad.mit.edu	37	chr5	7743807	7743807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcctgggcatctcctttgGggctgcgtttctcttgctgg	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7743807	T	T	7743807	3	4	9	1	0	0	0	0	1	0	0	0	294	1232	43	2	1956	2	ADCY2	5	7743807	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35859	7743807	173171453	6324	14475											
ADCY2	108	broad.mit.edu	37	chr5	7773086	7773086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggactgatatcctgttcCgtgttcctgcgggtaaacta	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7773086	A	A	7773086	2	1	9	1	0	0	0	0	0	0	0	1	294	639	23	1		1	ADCY2	5	7773086	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29279	7773086	173142174	6325	14476											
ADCY2	108	broad.mit.edu	37	chr5	7789868	7789868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggagaacgtgcttccCgcgcacgtggctgagcactt	13	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7789868	A	A	7789868	2	1	9	1	0	0	0	0	0	0	0	1	294	639	23	1		1	ADCY2	5	7789868	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16782	7789868	173125392	6326	14477											
C5orf49	134121	broad.mit.edu	37	chr5	7831983	7831983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatggagcaatgtgccCaaagccgggttccttgaggc	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7831983	A	A	7831983	3	1	9	1	0	0	0	0	1	0	0	0	2330	594	21	2	23	2	C5orf49	5	7831983	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42115	7831983	173083277	6327	14478											
FASTKD3	79072	broad.mit.edu	37	chr5	7863111	7863111	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaaggagttttggaccCtaaaaaatcataagtgcaaa	9	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7863111	A	A	7863111	5	1	9	1	0	0	0	0	0	0	1	0	5744	695	24	2	480	2	FASTKD3	5	7863111	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	31128	7863111	173052149	6328	14479											
FASTKD3	79072	broad.mit.edu	37	chr5	7865976	7865976	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaggaaactgcacccatGgggaaataaagccacatata	8	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7865976	T	T	7865976	1	4	9	0	1	0	0	0	0	0	0	0	5744	1363	47	2		2	FASTKD3	5	7865976	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2865	7865976	173049284	6329	14480											
MTRR	4552	broad.mit.edu	37	chr5	7869312	7869312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgttgtgcaggttcgtgccCggctggcgcggcgtgggtaa	19	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7869312	A	A	7869312	1	1	9	0	1	0	0	0	0	0	0	0	10055	667	23	1		1	MTRR	5	7869312	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3336	7869312	173045948	6330	14481											
MTRR	4552	broad.mit.edu	37	chr5	7875448	7875448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcaagagcttggagccCggcatttctatgacactgga	11	10	2	2	rs146068484		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7875448	A	A	7875448	2	1	9	1	0	0	0	0	0	0	0	1	10055	643	23	1		1	MTRR	5	7875448	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6136	7875448	173039812	6331	14482											
MTRR	4552	broad.mit.edu	37	chr5	7885863	7885863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcagcgtgatctgccCtaacagtgattctgaggtac	10	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7885863	A	A	7885863	3	1	9	1	0	0	0	0	1	0	0	0	10055	681	24	2	1060	2	MTRR	5	7885863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10415	7885863	173029397	6332	14483											
MTRR	4552	broad.mit.edu	37	chr5	7895941	7895941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggaaccggcatagcccCgtttattgggttcctacaac	9	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7895941	A	A	7895941	3	1	9	1	0	0	0	0	1	0	0	0	10055	652	23	1	1779	1	MTRR	5	7895941	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10078	7895941	173019319	6333	14484											
MTRR	4552	broad.mit.edu	37	chr5	7897254	7897254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaagagatgctcctgttGgggaggaggaagccccagca	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7897254	T	T	7897254	3	4	9	1	0	0	0	0	1	0	0	0	10055	1348	47	2	1981	2	MTRR	5	7897254	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1313	7897254	173018006	6334	14485											
MTRR	4552	broad.mit.edu	37	chr5	7900091	7900091	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataataagcaaagaggttGgagttgaaaaactagaagca	10	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7900091	T	T	7900091	4	4	9	1	0	0	0	0	0	1	0	0	10055	1349	47	2	2156	2	MTRR	5	7900091	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2837	7900091	173015169	6335	14486											
SEMA5A	9037	broad.mit.edu	37	chr5	9190354	9190354	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagatggtagaaaaccCctcagagggggccagagctc	13	10	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9190354	T	T	9190354	1	4	9	0	1	0	0	0	0	0	0	0	14150	638	22	4		4	SEMA5A	5	9190354	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1290263	9190354	171724906	6336	14487											
SEMA5A	9037	broad.mit.edu	37	chr5	9224775	9224775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagaaagagggagtgacGgaaggcttaccattgagcca	16	6	0	4	rs142476807	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9224775	T	T	9224775	1	4	9	0	1	0	0	0	0	0	0	0	14150	1131	39	1		1	SEMA5A	5	9224775	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34421	9224775	171690485	6337	14488											
SEMA5A	9037	broad.mit.edu	37	chr5	9337906	9337906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcttcgctctgaactccCgtaaccaggggccaatttct	7	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9337906	A	A	9337906	3	1	9	1	0	0	0	0	1	0	0	0	14150	652	23	1	3161	1	SEMA5A	5	9337906	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	113131	9337906	171577354	6338	14489											
CCT5	22948	broad.mit.edu	37	chr5	10254335	10254335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtaagagtccaccattcCgtgttttttagcaaaagatt	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10254335	A	A	10254335	1	1	9	0	1	0	0	0	0	0	0	0	2986	667	23	1		1	CCT5	5	10254335	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	916429	10254335	170660925	6339	14490											
CCT5	22948	broad.mit.edu	37	chr5	10256095	10256095	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccttgttagaagaagcGgagcaattgctagaccgagg	15	7	0	3	rs140826112	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10256095	T	T	10256095	2	4	9	1	0	0	0	0	0	0	0	1	2986	1103	39	1		1	CCT5	5	10256095	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1760	10256095	170659165	6340	14491											
CCT5	22948	broad.mit.edu	37	chr5	10260941	10260941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacctagcaatttgtcagtGgggctttgatgatgaagcaa	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10260941	T	T	10260941	3	4	9	1	0	0	0	0	1	0	0	0	2986	1357	47	2	937	2	CCT5	5	10260941	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4846	10260941	170654319	6341	14492											
CCT5	22948	broad.mit.edu	37	chr5	10261665	10261665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttctccctgaccacccCaattagctgattgccatcgc	5	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10261665	A	A	10261665	1	1	9	0	1	0	0	0	0	0	0	0	2986	609	21	2		2	CCT5	5	10261665	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	724	10261665	170653595	6342	14493											
CCT5	22948	broad.mit.edu	37	chr5	10261737	10261737	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcacagccgagaagctGggctttgctggtcttgtaca	13	10	2	1	rs114634318	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10261737	T	T	10261737	2	4	9	1	0	0	0	0	0	0	0	1	2986	1335	47	2		2	CCT5	5	10261737	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	72	10261737	170653523	6343	14494											
CMBL	134147	broad.mit.edu	37	chr5	10290761	10290761	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctttgcctgcatcaacGggggatttggtgacataagc	12	9	1	1	rs146175625	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10290761	T	T	10290761	2	4	9	1	0	0	0	0	0	0	0	1	3608	1103	39	1		1	CMBL	5	10290761	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29024	10290761	170624499	6344	14495											
CMBL	134147	broad.mit.edu	37	chr5	10290793	10290793	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacataagccttgatgtgctCgacttgaacttcacggccta	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10290793	A	A	10290793	4	1	9	1	0	0	0	0	0	1	0	0	3608	893	31	3	675	3	CMBL	5	10290793	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	10290793	170624467	6345	14496											
MARCH6	10299	broad.mit.edu	37	chr5	10382033	10382033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtggcctttgcatggttGggagttgttcctcttacagc	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10382033	T	T	10382033	3	4	9	1	0	0	0	0	1	0	0	0	9397	1339	47	2	326	2	MARCH6	5	10382033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91240	10382033	170533227	6346	14497											
MARCH6	10299	broad.mit.edu	37	chr5	10397337	10397337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctctagctaaataagtGgaatagtccaattaaacata	7	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10397337	T	T	10397337	1	4	9	0	1	0	0	0	0	0	0	0	9397	1363	47	2		2	MARCH6	5	10397337	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15304	10397337	170517923	6347	14498											
MARCH6	10299	broad.mit.edu	37	chr5	10402662	10402662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtctctttgttagtggtGgtagaaattggagtattccc	12	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10402662	T	T	10402662	2	4	9	1	0	0	0	0	0	0	0	1	9397	1335	47	2		2	MARCH6	5	10402662	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5325	10402662	170512598	6348	14499											
MARCH6	10299	broad.mit.edu	37	chr5	10405769	10405769	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaatatataggcatctcCgaagatttattttgtcagtg	8	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10405769	A	A	10405769	2	1	9	1	0	0	0	0	0	0	0	1	9397	644	23	1		1	MARCH6	5	10405769	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3107	10405769	170509491	6349	14500											
MARCH6	10299	broad.mit.edu	37	chr5	10407187	10407187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgattgactcttatagtGgtgtcataccctgtttcctt	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10407187	T	T	10407187	1	4	9	0	1	0	0	0	0	0	0	0	9397	1363	47	2		2	MARCH6	5	10407187	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1418	10407187	170508073	6350	14501											
MARCH6	10299	broad.mit.edu	37	chr5	10414612	10414612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatctgccttactttacCaggtatgagcttgtgctagc	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10414612	A	A	10414612	3	1	9	1	0	0	0	0	1	0	0	0	9397	594	21	2	2042	2	MARCH6	5	10414612	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7425	10414612	170500648	6351	14502											
MARCH6	10299	broad.mit.edu	37	chr5	10415634	10415634	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttaatgtcgttttggacGgggactgccaaaatccatga	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10415634	T	T	10415634	2	4	9	1	0	0	0	0	0	0	0	1	9397	1103	39	1		1	MARCH6	5	10415634	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1022	10415634	170499626	6352	14503											
MARCH6	10299	broad.mit.edu	37	chr5	10417362	10417362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcctctttaatgatgtGggctcctgtttcctaataga	8	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10417362	T	T	10417362	1	4	9	0	1	0	0	0	0	0	0	0	9397	1363	47	2		2	MARCH6	5	10417362	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1728	10417362	170497898	6353	14504											
MARCH6	10299	broad.mit.edu	37	chr5	10417405	10417405	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagactttgatagttgcGgtgctgttggctggagttgt	15	4	0	3	rs141524921	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10417405	T	T	10417405	2	4	9	1	0	0	0	0	0	0	0	1	9397	1103	39	1		1	MARCH6	5	10417405	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43	10417405	170497855	6354	14505											
MARCH6	10299	broad.mit.edu	37	chr5	10417427	10417427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttggctggagttgtcCctctccttctggggctcctg	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10417427	A	A	10417427	3	1	9	1	0	0	0	0	1	0	0	0	9397	623	22	2	2280	2	MARCH6	5	10417427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	10417427	170497833	6355	14506											
MARCH6	10299	broad.mit.edu	37	chr5	10426564	10426564	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcgtaaactggcagctccCgtgatctctgtgctgttgct	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10426564	A	A	10426564	2	1	9	1	0	0	0	0	0	0	0	1	9397	639	23	1		1	MARCH6	5	10426564	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9137	10426564	170488696	6356	14507											
CTNND2	1501	broad.mit.edu	37	chr5	10988265	10988265	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgttcgcctttagctcCgtggtaggtggcgttgctgc	15	9	0	0	rs151270671		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10988265	A	A	10988265	4	1	9	1	0	0	0	0	0	1	0	0	4054	661	23	1	388	1	CTNND2	5	10988265	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	561701	10988265	169926995	6357	14508											
CTNND2	1501	broad.mit.edu	37	chr5	11022935	11022935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgatgccaccggcatccCgtaaggccttggcgttctcc	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11022935	A	A	11022935	3	1	9	1	0	0	0	0	1	0	0	0	4054	652	23	1	756	1	CTNND2	5	11022935	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34670	11022935	169892325	6358	14509											
CTNND2	1501	broad.mit.edu	37	chr5	11159792	11159792	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagtgggggataatcacCgcgttggtcagtactgctag	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11159792	A	A	11159792	2	1	9	1	0	0	0	0	0	0	0	1	4054	639	23	1		1	CTNND2	5	11159792	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	136857	11159792	169755468	6359	14510											
CTNND2	1501	broad.mit.edu	37	chr5	11397161	11397161	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggctgaagctctggccCgtagctcgggcttgtgtgcc	14	13	1	1	rs61749784	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11397161	A	A	11397161	2	1	9	1	0	0	0	0	0	0	0	1	4054	639	23	1		1	CTNND2	5	11397161	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	237369	11397161	169518099	6360	14511											
CTNND2	1501	broad.mit.edu	37	chr5	11732234	11732234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacgcatatcacaaaaatGggaatgtttctacctgttct	6	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11732234	T	T	11732234	1	4	9	0	1	0	0	0	0	0	0	0	4054	1363	47	2		2	CTNND2	5	11732234	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	335073	11732234	169183026	6361	14512											
DNAH5	1767	broad.mit.edu	37	chr5	13700709	13700709	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgataatgtcatccaaacGaacaatgcgagcccttactg	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13700709	T	T	13700709	1	4	9	0	1	0	0	0	0	0	0	0	4644	1073	37	3		3	DNAH5	5	13700709	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1968475	13700709	167214551	6362	14513											
DNAH5	1767	broad.mit.edu	37	chr5	13700838	13700838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcatgttcctcttgtccCagccagcaccttcaagatat	6	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13700838	A	A	13700838	3	1	9	1	0	0	0	0	1	0	0	0	4644	595	21	2	248	2	DNAH5	5	13700838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129	13700838	167214422	6363	14514											
DNAH5	1767	broad.mit.edu	37	chr5	13736032	13736032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtagaggatgctgcccCgcgtagccactggaagacaa	14	10	0	2	rs140380565		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13736032	A	A	13736032	3	1	9	1	0	0	0	0	1	0	0	0	4644	652	23	1	2461	1	DNAH5	5	13736032	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35194	13736032	167179228	6364	14515											
DNAH5	1767	broad.mit.edu	37	chr5	13737440	13737440	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttctgtgtcacctcctcGgctgtcctttttgtgttact	8	12	2	0	rs140960222		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13737440	T	T	13737440	2	4	9	1	0	0	0	0	0	0	0	1	4644	1103	39	1		1	DNAH5	5	13737440	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1408	13737440	167177820	6365	14516											
DNAH5	1767	broad.mit.edu	37	chr5	13754222	13754222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtatacatgcgccatgttGgacacacaaaggaatttgat	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13754222	T	T	13754222	1	4	9	0	1	0	0	0	0	0	0	0	4644	1363	47	2		2	DNAH5	5	13754222	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16782	13754222	167161038	6366	14517											
DNAH5	1767	broad.mit.edu	37	chr5	13770949	13770949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgatttgggcgtcacgtGggtagaacgtcggaatctct	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13770949	T	T	13770949	3	4	9	1	0	0	0	0	1	0	0	0	4644	1348	47	2	4456	2	DNAH5	5	13770949	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16727	13770949	167144311	6367	14518											
DNAH5	1767	broad.mit.edu	37	chr5	13776599	13776599	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccagtcaattgtgcatcCtgaaattagggcagggaact	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13776599	A	A	13776599	4	1	9	1	0	0	0	0	0	1	0	0	4644	690	24	2	4652	2	DNAH5	5	13776599	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5650	13776599	167138661	6368	14519											
DNAH5	1767	broad.mit.edu	37	chr5	13788922	13788922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaaactcctcctctacCaaacttactaaagccttatc	1	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13788922	A	A	13788922	3	1	9	1	0	0	0	0	1	0	0	0	4644	593	21	2	5440	2	DNAH5	5	13788922	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12323	13788922	167126338	6369	14520											
DNAH5	1767	broad.mit.edu	37	chr5	13793696	13793696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgcctcttgagtctttGgggtatgtcattgcgtccac	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13793696	T	T	13793696	3	4	9	1	0	0	0	0	1	0	0	0	4644	1357	47	2	5846	2	DNAH5	5	13793696	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4774	13793696	167121564	6370	14521											
DNAH5	1767	broad.mit.edu	37	chr5	13823401	13823401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgctgcttccagttcagGgtaacctgccttgtccagaa	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13823401	T	T	13823401	3	4	9	1	0	0	0	0	1	0	0	0	4644	1232	43	2	7376	2	DNAH5	5	13823401	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29705	13823401	167091859	6371	14522											
DNAH5	1767	broad.mit.edu	37	chr5	13841891	13841891	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatcacaagatgcaatgaGgactgagattcttccaaaag	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13841891	T	T	13841891	2	4	9	1	0	0	0	0	0	0	0	1	4644	987	35	2		2	DNAH5	5	13841891	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18490	13841891	167073369	6372	14523											
DNAH5	1767	broad.mit.edu	37	chr5	13844843	13844844	+	Intron	DNP	GG	CT	CT													tggccaagagctaatgaacaGggaagcaacccttgttataa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	13844844	CT	CT	13844843	1	2	9	0	1	0	0	0	0	0	0	0	4644	1015	35	4		4	DNAH5	5	13844843	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	2952	13844843	167070417	6373	14524											
DNAH5	1767	broad.mit.edu	37	chr5	13844867	13844867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacccttgttataaaccCgttttcgaagagctacttaa	6	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13844867	A	A	13844867	1	1	9	0	1	0	0	0	0	0	0	0	4644	667	23	1		1	DNAH5	5	13844867	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	13844867	167070393	6374	14525											
DNAH5	1767	broad.mit.edu	37	chr5	13845070	13845070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgagacgaagaaaaacCgaggaaagcacagtcgtttt	11	7	1	2	rs74799487		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13845070	A	A	13845070	3	1	9	1	0	0	0	0	1	0	0	0	4644	652	23	1	8919	1	DNAH5	5	13845070	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	203	13845070	167070190	6375	14526											
DNAH5	1767	broad.mit.edu	37	chr5	13862654	13862654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagatagatggttttccCacctgttgctcagtagggat	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13862654	A	A	13862654	1	1	9	0	1	0	0	0	0	0	0	0	4644	609	21	2		2	DNAH5	5	13862654	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	17584	13862654	167052606	6376	14527											
DNAH5	1767	broad.mit.edu	37	chr5	13885212	13885212	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgaaatgagagagtaactCgcgggcttcttcccctaaca	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13885212	A	A	13885212	4	1	9	1	0	0	0	0	0	1	0	0	4644	893	31	3	11249	3	DNAH5	5	13885212	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22558	13885212	167030048	6377	14528											
DNAH5	1767	broad.mit.edu	37	chr5	13913881	13913881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggccatgtcttccagccCttcaattgtggaatcttgca	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13913881	A	A	13913881	3	1	9	1	0	0	0	0	1	0	0	0	4644	681	24	2	12643	2	DNAH5	5	13913881	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28669	13913881	167001379	6378	14529											
DNAH5	1767	broad.mit.edu	37	chr5	13919340	13919340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacagccttcacatccGggcttttcaattgttccaaa	6	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13919340	T	T	13919340	3	4	9	1	0	0	0	0	1	0	0	0	4644	1116	39	1	13246	1	DNAH5	5	13919340	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5459	13919340	166995920	6379	14530											
DNAH5	1767	broad.mit.edu	37	chr5	13923454	13923454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagaacacacatacccCagtaagagccacatcgtttc	7	12	0	3	rs35129409		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13923454	A	A	13923454	3	1	9	1	0	0	0	0	1	0	0	0	4644	594	21	2	13805	2	DNAH5	5	13923454	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4114	13923454	166991806	6380	14531											
TRIO	7204	broad.mit.edu	37	chr5	14287184	14287184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatttgaggtaacttccccCgtgtggctagacccactaaa	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14287184	A	A	14287184	1	1	9	0	1	0	0	0	0	0	0	0	16677	667	23	1		1	TRIO	5	14287184	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	363730	14287184	166628076	6381	14532											
TRIO	7204	broad.mit.edu	37	chr5	14336716	14336716	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagactggggaatgtgacccCgaagagatttatcaggctgc	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14336716	A	A	14336716	2	1	9	1	0	0	0	0	0	0	0	1	16677	639	23	1		1	TRIO	5	14336716	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49532	14336716	166578544	6382	14533											
TRIO	7204	broad.mit.edu	37	chr5	14399015	14399015	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaacattgagtctcagGgagaactcatcctacaggaa	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14399015	T	T	14399015	4	4	9	1	0	0	0	0	0	1	0	0	16677	1233	43	2	4568	2	TRIO	5	14399015	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62299	14399015	166516245	6383	14534											
TRIO	7204	broad.mit.edu	37	chr5	14406168	14406168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggcggtgttagctcaccCtgcttcaaaaatcctttctc	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14406168	A	A	14406168	1	1	9	0	1	0	0	0	0	0	0	0	16677	696	24	2		2	TRIO	5	14406168	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7153	14406168	166509092	6384	14535											
TRIO	7204	broad.mit.edu	37	chr5	14481329	14481329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccattatcatgtcctctcCatttcccttgcaggacttcc	4	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14481329	A	A	14481329	1	1	9	0	1	0	0	0	0	0	0	0	16677	609	21	2		2	TRIO	5	14481329	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	75161	14481329	166433931	6385	14536											
FAM105A	54491	broad.mit.edu	37	chr5	14601131	14601131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccttagacactgtctGgagaatggcaaaaggctttg	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14601131	T	T	14601131	3	4	9	1	0	0	0	0	1	0	0	0	5433	1357	47	2	128	2	FAM105A	5	14601131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119802	14601131	166314129	6386	14537											
FAM105A	54491	broad.mit.edu	37	chr5	14607518	14607518	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgagaagtatacaggctCgaatgtgtttggaaaactac	10	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14607518	A	A	14607518	4	1	9	1	0	0	0	0	0	1	0	0	5433	893	31	3	600	3	FAM105A	5	14607518	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6387	14607518	166307742	6387	14538											
FAM105A	54491	broad.mit.edu	37	chr5	14609050	14609050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagactcctgttttccaGggagacatcctctgatcctt	7	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14609050	T	T	14609050	3	4	9	1	0	0	0	0	1	0	0	0	5433	1000	35	2	847	2	FAM105A	5	14609050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1532	14609050	166306210	6388	14539											
FAM105A	54491	broad.mit.edu	37	chr5	14609133	14609133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactagagcaggtaaccGgggaggaagaactgcttgta	16	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14609133	T	T	14609133	1	4	9	0	1	0	0	0	0	0	0	0	5433	1131	39	1		1	FAM105A	5	14609133	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	14609133	166306127	6389	14540											
FAM105B	90268	broad.mit.edu	37	chr5	14681618	14681618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctccatacggcgagtcCgtggtgataattactgtgca	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14681618	A	A	14681618	3	1	9	1	0	0	0	0	1	0	0	0	5434	652	23	1	384	1	FAM105B	5	14681618	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72485	14681618	166233642	6390	14541											
ANKH	56172	broad.mit.edu	37	chr5	14711355	14711355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtcacctcctctgtcGgaggcatgtctgtcatggca	11	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14711355	T	T	14711355	3	4	9	1	0	0	0	0	1	0	0	0	627	1116	39	1	52	1	ANKH	5	14711355	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29737	14711355	166203905	6391	14542											
ANKH	56172	broad.mit.edu	37	chr5	14749313	14749313	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactgccaccaaggtcccGggaaacaaagaggttgacaa	11	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14749313	T	T	14749313	2	4	9	1	0	0	0	0	0	0	0	1	627	1115	39	1		1	ANKH	5	14749313	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37958	14749313	166165947	6392	14543											
FBXL7	23194	broad.mit.edu	37	chr5	15500758	15500758	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagctatggagtgtcccGggagacggcgggcatgacgg	18	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15500758	T	T	15500758	1	4	9	0	1	0	0	0	0	0	0	0	5781	1131	39	1		1	FBXL7	5	15500758	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	751445	15500758	165414502	6393	14544											
MARCH11	441061	broad.mit.edu	37	chr5	16067642	16067642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttctgataagtcttcatGgggcctcatccgattgaaca	8	10	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16067642	T	T	16067642	3	4	9	1	0	0	0	0	1	0	0	0	9392	1348	47	2	65	2	MARCH11	5	16067642	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	566884	16067642	164847618	6394	14545											
MARCH11	441061	broad.mit.edu	37	chr5	16177950	16177950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagctgatgtgtatacCgaactgacccatcacatcgg	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16177950	A	A	16177950	3	1	9	1	0	0	0	0	1	0	0	0	9392	652	23	1	642	1	MARCH11	5	16177950	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110308	16177950	164737310	6395	14546											
ZNF622	90441	broad.mit.edu	37	chr5	16463368	16463368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcaaatcttgccaacacCaactttctctcctagaaaaa	3	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16463368	A	A	16463368	3	1	9	1	0	0	0	0	1	0	0	0	18173	594	21	2	551	2	ZNF622	5	16463368	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	285418	16463368	164451892	6396	14547											
ZNF622	90441	broad.mit.edu	37	chr5	16463702	16463702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagcgagctggaatgatGggaacaaaataagcagtccg	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16463702	T	T	16463702	3	4	9	1	0	0	0	0	1	0	0	0	18173	1348	47	2	678	2	ZNF622	5	16463702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	334	16463702	164451558	6397	14548											
ZNF622	90441	broad.mit.edu	37	chr5	16465240	16465240	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcaaaccactggagccGgggtggtttctcactcgggt	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16465240	T	T	16465240	2	4	9	1	0	0	0	0	0	0	0	1	18173	1115	39	1		1	ZNF622	5	16465240	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1538	16465240	164450020	6398	14549											
ZNF622	90441	broad.mit.edu	37	chr5	16465528	16465528	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgggacttgaggtggttctCgtaggcgttgaaagaggcaa	16	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16465528	A	A	16465528	4	1	9	1	0	0	0	0	0	1	0	0	18173	893	31	3	1210	3	ZNF622	5	16465528	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	288	16465528	164449732	6399	14550											
FAM134B	54463	broad.mit.edu	37	chr5	16483363	16483363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatattatatttaaaattGgagaaatctgacaagctgat	7	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16483363	T	T	16483363	1	4	9	0	1	0	0	0	0	0	0	0	5492	1363	47	2		2	FAM134B	5	16483363	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17835	16483363	164431897	6400	14551											
FAM134B	54463	broad.mit.edu	37	chr5	16483462	16483462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaaacttgccttgccaGggctctgctgtttaaaaaga	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16483462	T	T	16483462	3	4	9	1	0	0	0	0	1	0	0	0	5492	1000	35	2	939	2	FAM134B	5	16483462	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99	16483462	164431798	6401	14552											
MYO10	4651	broad.mit.edu	37	chr5	16670610	16670610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccagcacccagcccaccCcaacacacggcagccagttc	7	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16670610	A	A	16670610	1	1	9	0	1	0	0	0	0	0	0	0	10156	638	22	2		2	MYO10	5	16670610	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	187148	16670610	164244650	6402	14553											
MYO10	4651	broad.mit.edu	37	chr5	16673901	16673901	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagcttctatttcatctcGggaaggcacaaactctcggc	9	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16673901	T	T	16673901	2	4	9	1	0	0	0	0	0	0	0	1	10156	1124	39	1		1	MYO10	5	16673901	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3291	16673901	164241359	6403	14554											
MYO10	4651	broad.mit.edu	37	chr5	16673973	16673973	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagagcgtatttttccatctCgcttcctggaaactgttccc	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16673973	A	A	16673973	4	1	9	1	0	0	0	0	0	1	0	0	10156	893	31	3	1210	3	MYO10	5	16673973	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	16673973	164241287	6404	14555											
MYO10	4651	broad.mit.edu	37	chr5	16673993	16673993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcctggaaactgttccCgtatcctaggaggcaaacac	9	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16673993	A	A	16673993	3	1	9	1	0	0	0	0	1	0	0	0	10156	652	23	1	1230	1	MYO10	5	16673993	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	16673993	164241267	6405	14556											
MYO10	4651	broad.mit.edu	37	chr5	16676119	16676119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatggtctctgaggagtcGgggtggagctctggacttac	15	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16676119	T	T	16676119	1	4	9	0	1	0	0	0	0	0	0	0	10156	1131	39	1		1	MYO10	5	16676119	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2126	16676119	164239141	6406	14557											
MYO10	4651	broad.mit.edu	37	chr5	16681660	16681660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatctgtgaggagaaaccCcaaagaccacacaatcatct	6	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16681660	A	A	16681660	1	1	9	0	1	0	0	0	0	0	0	0	10156	638	22	2		2	MYO10	5	16681660	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5541	16681660	164233600	6407	14558											
MYO10	4651	broad.mit.edu	37	chr5	16682119	16682119	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgatcacaaacgagttGggtctgagccacaagatgag	13	7	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16682119	T	T	16682119	2	4	9	1	0	0	0	0	0	0	0	1	10156	1335	47	2		2	MYO10	5	16682119	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	459	16682119	164233141	6408	14559											
MYO10	4651	broad.mit.edu	37	chr5	16682155	16682155	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagaaggaaacaaagcccCttagccctaccgtcagcatc	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16682155	A	A	16682155	1	1	9	0	1	0	0	0	0	0	0	0	10156	696	24	2		2	MYO10	5	16682155	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	16682155	164233105	6409	14560											
MYO10	4651	broad.mit.edu	37	chr5	16764450	16764450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgatcttcttgattaccCactcaaagcagcacgcatac	6	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16764450	A	A	16764450	3	1	9	1	0	0	0	0	1	0	0	0	10156	595	21	2	5061	2	MYO10	5	16764450	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82295	16764450	164150810	6410	14561											
MYO10	4651	broad.mit.edu	37	chr5	16902669	16902669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtccttgggcacgcatcGggcacagttagtgcagcgaa	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902669	T	T	16902669	1	4	9	0	1	0	0	0	0	0	0	0	10156	1131	39	1		1	MYO10	5	16902669	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	138219	16902669	164012591	6411	14562											
CDH12	1010	broad.mit.edu	37	chr5	21751911	21751911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgccaagactttaaagcGgggtccccagtctgtcagat	11	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21751911	T	T	21751911	3	4	9	1	0	0	0	0	1	0	0	0	3128	1116	39	1	68	1	CDH12	5	21751911	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4849242	21751911	159163349	6412	14563											
CDH12	1010	broad.mit.edu	37	chr5	21842274	21842274	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaggtgacatacttttGgggaatcgaggtggattgtc	15	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21842274	T	T	21842274	2	4	9	1	0	0	0	0	0	0	0	1	3128	1335	47	2		2	CDH12	5	21842274	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	90363	21842274	159072986	6413	14564											
CDH12	1010	broad.mit.edu	37	chr5	21842304	21842304	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggattgtcattgacatcGgtgagagtgatgttgactat	14	4	1	4	rs76592602	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21842304	T	T	21842304	2	4	9	1	0	0	0	0	0	0	0	1	3128	1103	39	1		1	CDH12	5	21842304	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	21842304	159072956	6414	14565											
CDH12	1010	broad.mit.edu	37	chr5	21975217	21975217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccacaggagacatttctGgaacagtagcaacataaggt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21975217	T	T	21975217	3	4	9	1	0	0	0	0	1	0	0	0	3128	1348	47	2	1915	2	CDH12	5	21975217	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	132913	21975217	158940043	6415	14566											
CDH12	1010	broad.mit.edu	37	chr5	22078619	22078619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaattgattccataccCagccacgtttaacacgttgg	6	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078619	A	A	22078619	3	1	9	1	0	0	0	0	1	0	0	0	3128	595	21	2	2261	2	CDH12	5	22078619	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103402	22078619	158836641	6416	14567											
CDH12	1010	broad.mit.edu	37	chr5	22078751	22078751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctccatcaaacagaaccCagagaagcagggataaacag	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078751	A	A	22078751	3	1	9	1	0	0	0	0	1	0	0	0	3128	595	21	2	2393	2	CDH12	5	22078751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132	22078751	158836509	6417	14568											
PRDM9	56979	broad.mit.edu	37	chr5	23509511	23509511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctatgtcctacacacaGggtagaggaaaaggaccagc	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509511	T	T	23509511	1	4	9	0	1	0	0	0	0	0	0	0	12569	1015	35	2		2	PRDM9	5	23509511	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1430760	23509511	157405749	6418	14569											
PRDM9	56979	broad.mit.edu	37	chr5	23509578	23509578	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatctgttacttcctctaGgtcaaagatgccttcaaaga	8	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509578	T	T	23509578	5	4	9	1	0	0	0	0	0	0	1	0	12569	1014	35	2	75	2	PRDM9	5	23509578	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	67	23509578	157405682	6419	14570											
PRDM9	56979	broad.mit.edu	37	chr5	23509617	23509617	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatttccatatacttcacCaaggaagaatgggcagagat	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509617	A	A	23509617	2	1	9	1	0	0	0	0	0	0	0	1	12569	581	21	2		2	PRDM9	5	23509617	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	23509617	157405643	6420	14571											
PRDM9	56979	broad.mit.edu	37	chr5	23517945	23517945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagaatctctagtgtttGgaaacatttaccaaccaaac	7	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23517945	T	T	23517945	1	4	9	0	1	0	0	0	0	0	0	0	12569	1363	47	2		2	PRDM9	5	23517945	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8328	23517945	157397315	6421	14572											
PRDM9	56979	broad.mit.edu	37	chr5	23523397	23523397	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccttgtttttctgaaactCagatcaccaaggggagaaac	9	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23523397	A	A	23523397	1	1	9	0	1	0	0	0	0	0	0	0	12569	841	29	3		3	PRDM9	5	23523397	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5452	23523397	157391863	6422	14573											
PRDM9	56979	broad.mit.edu	37	chr5	23527461	23527461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgcagggagtgtgggcGgggctttcgcgataagtcac	17	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23527461	T	T	23527461	3	4	9	1	0	0	0	0	1	0	0	0	12569	1116	39	1	2302	1	PRDM9	5	23527461	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4064	23527461	157387799	6423	14574											
CDH10	1008	broad.mit.edu	37	chr5	24487727	24487727	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgaagtggagacagcatGggtagagttactttctcttg	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24487727	T	T	24487727	1	4	9	0	1	0	0	0	0	0	0	0	3126	1363	47	2		2	CDH10	5	24487727	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	960266	24487727	156427533	6424	14575											
CDH10	1008	broad.mit.edu	37	chr5	24492997	24492997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttctgtccacctaaaGggtcatctttgtctactgca	6	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24492997	T	T	24492997	3	4	9	1	0	0	0	0	1	0	0	0	3126	1000	35	2	825	2	CDH10	5	24492997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5270	24492997	156422263	6425	14576											
CDH10	1008	broad.mit.edu	37	chr5	24509910	24509910	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagagtataaagtcttcGgctctcatagtcgagtggct	10	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24509910	T	T	24509910	2	4	9	1	0	0	0	0	0	0	0	1	3126	1124	39	1		1	CDH10	5	24509910	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16913	24509910	156405350	6426	14577											
CDH10	1008	broad.mit.edu	37	chr5	24511474	24511474	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttcctgtgtgtccttctCagtcacgatgtcaaacatat	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24511474	A	A	24511474	4	1	9	1	0	0	0	0	0	1	0	0	3126	835	29	3	1430	3	CDH10	5	24511474	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1564	24511474	156403786	6427	14578											
CDH10	1008	broad.mit.edu	37	chr5	24511501	24511501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcaaacatatcagtacCgtcaccatcaataattcggt	6	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24511501	A	A	24511501	3	1	9	1	0	0	0	0	1	0	0	0	3126	652	23	1	1457	1	CDH10	5	24511501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	24511501	156403759	6428	14579											
CDH10	1008	broad.mit.edu	37	chr5	24537505	24537505	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctacaacagacatttcGggaacactagctgtatagat	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24537505	T	T	24537505	2	4	9	1	0	0	0	0	0	0	0	1	3126	1103	39	1		1	CDH10	5	24537505	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26004	24537505	156377755	6429	14580											
CDH9	1007	broad.mit.edu	37	chr5	26881223	26881223	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacagtacttccactaataTtgattaagtcaaacaatcct	4	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26881223	C	C	26881223	1	2	9	0	1	0	0	0	0	0	0	0	3147	1508	52	5		5	CDH9	5	26881223	3'UTR	SNP	T	TCGA-05-4396-01A-21D-1855-08	2343718	26881223	154034037	6430	14581											
CDH9	1007	broad.mit.edu	37	chr5	26881253	26881253	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacaatcctcttagtctcGgtcactatcatcacccccat	3	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881253	T	T	26881253	2	4	9	1	0	0	0	0	0	0	0	1	3147	1124	39	1		1	CDH9	5	26881253	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	26881253	154034007	6431	14582											
CDH9	1007	broad.mit.edu	37	chr5	26881657	26881657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggtcacaatgttgtccCggacatcgtcttttgaaatt	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881657	A	A	26881657	3	1	9	1	0	0	0	0	1	0	0	0	3147	652	23	1	415	1	CDH9	5	26881657	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	404	26881657	154033603	6432	14583											
CDH9	1007	broad.mit.edu	37	chr5	26885777	26885777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagctcccgtgctcaggcCggctgaaaggatcagggctt	15	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26885777	A	A	26885777	3	1	9	1	0	0	0	0	1	0	0	0	3147	652	23	1	549	1	CDH9	5	26885777	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4120	26885777	154029483	6433	14584											
CDH9	1007	broad.mit.edu	37	chr5	26886150	26886150	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaagaatttgtgacctcGgggagggtcatccttatcca	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26886150	T	T	26886150	2	4	9	1	0	0	0	0	0	0	0	1	3147	1124	39	1		1	CDH9	5	26886150	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	373	26886150	154029110	6434	14585											
CDH9	1007	broad.mit.edu	37	chr5	26890584	26890584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgccaaggagatgattccCggtcaagggctttcaaagtg	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26890584	A	A	26890584	3	1	9	1	0	0	0	0	1	0	0	0	3147	652	23	1	1046	1	CDH9	5	26890584	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4434	26890584	154024676	6435	14586											
CDH9	1007	broad.mit.edu	37	chr5	26890659	26890659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacggtccatatcagtatgcCgatcaacagagtacctggca	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26890659	A	A	26890659	3	1	9	1	0	0	0	0	1	0	0	0	3147	652	23	1	1121	1	CDH9	5	26890659	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	26890659	154024601	6436	14587											
CDH9	1007	broad.mit.edu	37	chr5	26903854	26903854	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatttctgcattttccccCacgtcagggtcattggcttt	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26903854	A	A	26903854	2	1	9	1	0	0	0	0	0	0	0	1	3147	581	21	2		2	CDH9	5	26903854	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13195	26903854	154011406	6437	14588											
CDH9	1007	broad.mit.edu	37	chr5	26906072	26906072	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaacatttcttactctgGggaaatcgaggagggttgtt	12	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26906072	T	T	26906072	2	4	9	1	0	0	0	0	0	0	0	1	3147	1219	43	2		2	CDH9	5	26906072	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2218	26906072	154009188	6438	14589											
CDH6	1004	broad.mit.edu	37	chr5	31294254	31294254	+	Silent	SNP	C	A	A													aacagaaggacagggagaccCgtggagcccgagtctgaatt					rs147617483	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31294254	A	A	31294254	2	1	9	1	0	0	0	0	0	0	0	1	3144	639	23	1		1	CDH6	5	31294254	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4388182	31294254	149621006	6439	14590	90	2									
CDH6	1004	broad.mit.edu	37	chr5	31294263	31294263	+	Silent	SNP	C	A	A													acagggagacccgtggagccCgagtctgaattcatcatcaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31294263	A	A	31294263	2	1	9	1	0	0	0	0	0	0	0	1	3144	639	23	1		1	CDH6	5	31294263	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	31294263	149620997	6440	14591	90	2									
CDH6	1004	broad.mit.edu	37	chr5	31323124	31323124	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacgaagggacattgtgccCgaagcccttttcctaccccg	9	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323124	A	A	31323124	2	1	9	1	0	0	0	0	0	0	0	1	3144	639	23	1		1	CDH6	5	31323124	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28861	31323124	149592136	6441	14592											
RNASEN	29102	broad.mit.edu	37	chr5	31401631	31401631	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttgtctgtacttccgttCgatgaaccgcttctgatggg	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31401631	A	A	31401631	4	1	9	1	0	0	0	0	0	1	0	0	13528	893	31	3	95	3	RNASEN	5	31401631	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78507	31401631	149513629	6442	14593											
RNASEN	29102	broad.mit.edu	37	chr5	31431749	31431749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctacaaaggtcaggccCgtgagcatacagcataaatc	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31431749	A	A	31431749	3	1	9	1	0	0	0	0	1	0	0	0	13528	652	23	1	1089	1	RNASEN	5	31431749	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30118	31431749	149483511	6443	14594											
RNASEN	29102	broad.mit.edu	37	chr5	31515209	31515209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcaggcatggtctcctcGggctctttttccttgattga	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31515209	T	T	31515209	2	4	9	1	0	0	0	0	0	0	0	1	13528	1103	39	1		1	RNASEN	5	31515209	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83460	31515209	149400051	6444	14595											
RNASEN	29102	broad.mit.edu	37	chr5	31515312	31515312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgagctctcttcttctccCtacttggggagcgacttcaa	8	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31515312	A	A	31515312	3	1	9	1	0	0	0	0	1	0	0	0	13528	681	24	2	3167	2	RNASEN	5	31515312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	31515312	149399948	6445	14596											
RNASEN	29102	broad.mit.edu	37	chr5	31521311	31521311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatgcctgtgtctctccCgttctcgctctcttaaagga	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31521311	A	A	31521311	3	1	9	1	0	0	0	0	1	0	0	0	13528	652	23	1	3382	1	RNASEN	5	31521311	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5999	31521311	149393949	6446	14597											
C5orf22	55322	broad.mit.edu	37	chr5	31545771	31545772	+	Missense_Mutation	DNP	CC	AA	AA													agaatggaatcactagttccCcttgtacagagtttgaaaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31545772	AA	AA	31545771	3	1	9	1	0	0	0	0	1	0	0	0	2308	610	22	2	1037	2	C5orf22	5	31545771	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	24460	31545771	149369489	6447	14598											
C5orf22	55322	broad.mit.edu	37	chr5	31545794	31545794	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacagagtttgaaaaaacGgatggaagtaccagactatg	11	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31545794	T	T	31545794	3	4	9	1	0	0	0	0	1	0	0	0	2308	1116	39	1	1060	1	C5orf22	5	31545794	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	31545794	149369466	6448	14599											
PDZD2	23037	broad.mit.edu	37	chr5	31725590	31725590	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttaagtaaataaaactatGagtaaatgaatgatccatgt	6	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31725590	T	T	31725590	1	4	9	0	1	0	0	0	0	0	0	0	11795	1305	45	3		3	PDZD2	5	31725590	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	179796	31725590	149189670	6449	14600											
PDZD2	23037	broad.mit.edu	37	chr5	31840897	31840897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacattgtagactcttccCgttttgccatggtgacacct	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31840897	A	A	31840897	1	1	9	0	1	0	0	0	0	0	0	0	11795	667	23	1		1	PDZD2	5	31840897	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	115307	31840897	149074363	6450	14601											
PDZD2	23037	broad.mit.edu	37	chr5	32000347	32000347	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccattcttcgctccgccacGggaatggtgcagcttgtggt	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32000347	T	T	32000347	2	4	9	1	0	0	0	0	0	0	0	1	11795	1103	39	1		1	PDZD2	5	32000347	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	159450	32000347	148914913	6451	14602											
PDZD2	23037	broad.mit.edu	37	chr5	32000404	32000404	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtgtttgttttttggtactCgtaatggtggcagtggtgag	15	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32000404	A	A	32000404	1	1	9	0	1	0	0	0	0	0	0	0	11795	899	31	3		3	PDZD2	5	32000404	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	32000404	148914856	6452	14603											
PDZD2	23037	broad.mit.edu	37	chr5	32000438	32000438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgagttggggttgagccCcacctcccatgccacacaca	11	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32000438	A	A	32000438	1	1	9	0	1	0	0	0	0	0	0	0	11795	638	22	2		2	PDZD2	5	32000438	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	32000438	148914822	6453	14604											
PDZD2	23037	broad.mit.edu	37	chr5	32010444	32010444	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccccataggaaaactcCgcagaggacctcctcaggtt	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32010444	A	A	32010444	2	1	9	1	0	0	0	0	0	0	0	1	11795	639	23	1		1	PDZD2	5	32010444	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10006	32010444	148904816	6454	14605											
PDZD2	23037	broad.mit.edu	37	chr5	32052744	32052744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgtgaagaagtctaccCgctccttaagcacgactcag	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32052744	A	A	32052744	3	1	9	1	0	0	0	0	1	0	0	0	11795	652	23	1	1723	1	PDZD2	5	32052744	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42300	32052744	148862516	6455	14606											
PDZD2	23037	broad.mit.edu	37	chr5	32052797	32052797	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctcattcggccatcCgtcatctcgatcattgggtt	11	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32052797	A	A	32052797	2	1	9	1	0	0	0	0	0	0	0	1	11795	639	23	1		1	PDZD2	5	32052797	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	32052797	148862463	6456	14607											
PDZD2	23037	broad.mit.edu	37	chr5	32053867	32053867	+	Intron	SNP	G	T	T													cctggactctcatctgcttcGgatctagggccttggcttta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32053867	T	T	32053867	1	4	9	0	1	0	0	0	0	0	0	0	11795	1131	39	1		1	PDZD2	5	32053867	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1070	32053867	148861393	6457	14608	91	2									
PDZD2	23037	broad.mit.edu	37	chr5	32053874	32053874	+	Splice_Site	SNP	G	T	T													tctcatctgcttcggatctaGggccttggctttagtattgc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32053874	T	T	32053874	5	4	9	1	0	0	0	0	0	0	1	0	11795	1014	35	2	1819	2	PDZD2	5	32053874	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	32053874	148861386	6458	14609	91	2									
PDZD2	23037	broad.mit.edu	37	chr5	32053951	32053951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtcaagaccatcttccCaaatggatcagctgcagagg	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32053951	A	A	32053951	3	1	9	1	0	0	0	0	1	0	0	0	11795	594	21	2	1896	2	PDZD2	5	32053951	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	32053951	148861309	6459	14610											
PDZD2	23037	broad.mit.edu	37	chr5	32061112	32061112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgccctccctagccgcGgggatcaaatcctggaagtg	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32061112	T	T	32061112	3	4	9	1	0	0	0	0	1	0	0	0	11795	1116	39	1	2373	1	PDZD2	5	32061112	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7161	32061112	148854148	6460	14611											
PDZD2	23037	broad.mit.edu	37	chr5	32071513	32071513	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccccttgaagagtccctctCttgcaaaaaaggtgagtcaa	8	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32071513	A	A	32071513	3	1	9	1	0	0	0	0	1	0	0	0	11795	913	32	3	2615	3	PDZD2	5	32071513	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10401	32071513	148843747	6461	14612											
PDZD2	23037	broad.mit.edu	37	chr5	32072246	32072246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgttttcttagttatcGgatgttttcttcttcaacag	8	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32072246	T	T	32072246	1	4	9	0	1	0	0	0	0	0	0	0	11795	1131	39	1		1	PDZD2	5	32072246	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	733	32072246	148843014	6462	14613											
PDZD2	23037	broad.mit.edu	37	chr5	32074486	32074486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaattggaatacacagtcCgtacagacacccagagtccg	8	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32074486	A	A	32074486	3	1	9	1	0	0	0	0	1	0	0	0	11795	652	23	1	3340	1	PDZD2	5	32074486	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2240	32074486	148840774	6463	14614											
PDZD2	23037	broad.mit.edu	37	chr5	32088186	32088186	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcctgggtgacagcacGgagccgtctctgtcatccat	12	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32088186	T	T	32088186	2	4	9	1	0	0	0	0	0	0	0	1	11795	1103	39	1		1	PDZD2	5	32088186	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13700	32088186	148827074	6464	14615											
PDZD2	23037	broad.mit.edu	37	chr5	32090175	32090175	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattccagggggcccctcGggggaggaccatctctactt	13	13	1	0	rs138558075		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32090175	T	T	32090175	2	4	9	1	0	0	0	0	0	0	0	1	11795	1103	39	1		1	PDZD2	5	32090175	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1989	32090175	148825085	6465	14616											
PDZD2	23037	broad.mit.edu	37	chr5	32090258	32090258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctcaagccattttggacGggagggtcaccccccacaca	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32090258	T	T	32090258	3	4	9	1	0	0	0	0	1	0	0	0	11795	1116	39	1	6778	1	PDZD2	5	32090258	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	32090258	148825002	6466	14617											
PDZD2	23037	broad.mit.edu	37	chr5	32090379	32090379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcctggctaatggacaGggcatatatagtgtaaagcc	11	10	0	0	rs113070170	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32090379	T	T	32090379	3	4	9	1	0	0	0	0	1	0	0	0	11795	991	35	2	6899	2	PDZD2	5	32090379	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121	32090379	148824881	6467	14618											
PDZD2	23037	broad.mit.edu	37	chr5	32093221	32093221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagacagccgaggagagccCgccccgagtcctggagaggg	16	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32093221	A	A	32093221	1	1	9	0	1	0	0	0	0	0	0	0	11795	667	23	1		1	PDZD2	5	32093221	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2842	32093221	148822039	6468	14619											
GOLPH3	64083	broad.mit.edu	37	chr5	32126309	32126309	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggagaatggttcacccCgagcagagttacttggtgaa	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32126309	A	A	32126309	1	1	9	0	1	0	0	0	0	0	0	0	6632	667	23	1		1	GOLPH3	5	32126309	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	33088	32126309	148788951	6469	14620											
GOLPH3	64083	broad.mit.edu	37	chr5	32126346	32126346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgccgccaccaccgccCacagaacctcattggtgttg	9	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32126346	A	A	32126346	3	1	9	1	0	0	0	0	1	0	0	0	6632	595	21	2	31	2	GOLPH3	5	32126346	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	32126346	148788914	6470	14621											
MTMR12	54545	broad.mit.edu	37	chr5	32243615	32243615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattcatgagtaaaacaatGgtttgaaatacctgattatg	7	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32243615	T	T	32243615	1	4	9	0	1	0	0	0	0	0	0	0	10035	1363	47	2		2	MTMR12	5	32243615	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	117269	32243615	148671645	6471	14622											
MTMR12	54545	broad.mit.edu	37	chr5	32248879	32248879	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtagaactagtactgaccCatctaagaagctcttttgga	8	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32248879	A	A	32248879	4	1	9	1	0	0	0	0	0	1	0	0	10035	608	21	2	1380	2	MTMR12	5	32248879	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5264	32248879	148666381	6472	14623											
MTMR12	54545	broad.mit.edu	37	chr5	32248980	32248980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtggcaggaccaacacCatatctgtagaaacaaataa	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32248980	A	A	32248980	3	1	9	1	0	0	0	0	1	0	0	0	10035	595	21	2	1481	2	MTMR12	5	32248980	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101	32248980	148666280	6473	14624											
MTMR12	54545	broad.mit.edu	37	chr5	32249029	32249029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatacaataaacacaaccCaacaggggacacataagctt	6	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32249029	A	A	32249029	1	1	9	0	1	0	0	0	0	0	0	0	10035	609	21	2		2	MTMR12	5	32249029	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	32249029	148666231	6474	14625											
ZFR	51663	broad.mit.edu	37	chr5	32397396	32397396	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggatcattaaagctgcactCgcataatttacaatggaacc	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32397396	A	A	32397396	4	1	9	1	0	0	0	0	0	1	0	0	17785	893	31	3	1506	3	ZFR	5	32397396	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148367	32397396	148517864	6475	14626											
ZFR	51663	broad.mit.edu	37	chr5	32415288	32415288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggctgtaacctgctttGggggctgaagtaggaaagag	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32415288	T	T	32415288	2	4	9	1	0	0	0	0	0	0	0	1	17785	1335	47	2		2	ZFR	5	32415288	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17892	32415288	148499972	6476	14627											
NPR3	4883	broad.mit.edu	37	chr5	32712207	32712207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacgaggattcagactgtGggaaccgtgcgctcttcagc	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32712207	T	T	32712207	3	4	9	1	0	0	0	0	1	0	0	0	10691	1348	47	2	327	2	NPR3	5	32712207	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	296919	32712207	148203053	6477	14628											
NPR3	4883	broad.mit.edu	37	chr5	32739027	32739027	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaagctaagcaagcatactCgtccctccagacagtcactc	7	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32739027	A	A	32739027	4	1	9	1	0	0	0	0	0	1	0	0	10691	893	31	3	960	3	NPR3	5	32739027	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26820	32739027	148176233	6478	14629											
TARS	6897	broad.mit.edu	37	chr5	33455126	33455126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgtttatgctacggtcCgccaatagaaaatggattct	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33455126	A	A	33455126	3	1	9	1	0	0	0	0	1	0	0	0	15678	652	23	1	548	1	TARS	5	33455126	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	716099	33455126	147460134	6479	14630											
TARS	6897	broad.mit.edu	37	chr5	33459874	33459874	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgactctggatgacctcGggccactggcagcactacag	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33459874	T	T	33459874	2	4	9	1	0	0	0	0	0	0	0	1	15678	1103	39	1		1	TARS	5	33459874	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4748	33459874	147455386	6480	14631											
TARS	6897	broad.mit.edu	37	chr5	33461116	33461116	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcactcacaggactcaccCgggtacgaagattccaacag	10	13	2	1	rs148364973		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33461116	A	A	33461116	2	1	9	1	0	0	0	0	0	0	0	1	15678	643	23	1		1	TARS	5	33461116	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1242	33461116	147454144	6481	14632											
ADAMTS12	81792	broad.mit.edu	37	chr5	33527340	33527340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgccttctttgcctttGggtgtgtgtgatgtgtgtct	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33527340	T	T	33527340	3	4	9	1	0	0	0	0	1	0	0	0	257	1357	47	2	50	2	ADAMTS12	5	33527340	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66224	33527340	147387920	6482	14633											
ADAMTS12	81792	broad.mit.edu	37	chr5	33527362	33527362	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgatgtgtgtctgGggacacgagaagcagcactc	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33527362	T	T	33527362	2	4	9	1	0	0	0	0	0	0	0	1	257	1219	43	2		2	ADAMTS12	5	33527362	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	33527362	147387898	6483	14634											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576243	33576243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcatttagcaaaaagccCtcagtaatcagacttgttgc	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33576243	A	A	33576243	3	1	9	1	0	0	0	0	1	0	0	0	257	680	24	2	920	2	ADAMTS12	5	33576243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48881	33576243	147339017	6484	14635											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576302	33576302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttcagaactttttgtttGgttcatgttgtttggaagtt	11	3	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33576302	T	T	33576302	3	4	9	1	0	0	0	0	1	0	0	0	257	1357	47	2	979	2	ADAMTS12	5	33576302	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59	33576302	147338958	6485	14636											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576342	33576342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggtggttacggtttgcCgtctttcctgagggttctgg	14	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33576342	A	A	33576342	2	1	9	1	0	0	0	0	0	0	0	1	257	639	23	1		1	ADAMTS12	5	33576342	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	33576342	147338918	6486	14637											
ADAMTS12	81792	broad.mit.edu	37	chr5	33577068	33577068	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgtaggtggagggacGggctttagtgttggtgggtt	20	3	0	0	rs151262185	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33577068	T	T	33577068	2	4	9	1	0	0	0	0	0	0	0	1	257	1103	39	1		1	ADAMTS12	5	33577068	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	726	33577068	147338192	6487	14638											
ADAMTS12	81792	broad.mit.edu	37	chr5	33577168	33577169	+	Missense_Mutation	DNP	CG	AT	AT													gctggaggccacacagagctCggctgttgggtttccttgtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	33577169	AT	AT	33577168	3	1	9	1	0	0	0	0	1	0	0	0	257	884	31	3	1845	3	ADAMTS12	5	33577168	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	100	33577168	147338092	6488	14639											
ADAMTS12	81792	broad.mit.edu	37	chr5	33588685	33588685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaataatgccagtttcccCgccgagccctgagctcacct	8	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33588685	A	A	33588685	1	1	9	0	1	0	0	0	0	0	0	0	257	667	23	1		1	ADAMTS12	5	33588685	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11517	33588685	147326575	6489	14640											
ADAMTS12	81792	broad.mit.edu	37	chr5	33596079	33596079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcacttcttctgtctccCattgggctgtgtttctgggt	11	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33596079	A	A	33596079	3	1	9	1	0	0	0	0	1	0	0	0	257	594	21	2	2202	2	ADAMTS12	5	33596079	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7394	33596079	147319181	6490	14641											
ADAMTS12	81792	broad.mit.edu	37	chr5	33596124	33596124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtagctttcaccatccCgcggcccttctttatgcaat	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33596124	A	A	33596124	3	1	9	1	0	0	0	0	1	0	0	0	257	652	23	1	2247	1	ADAMTS12	5	33596124	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	33596124	147319136	6491	14642											
ADAMTS12	81792	broad.mit.edu	37	chr5	33649732	33649732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatcgtactggagctggcGggacatgatgtacggatgtc	17	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33649732	T	T	33649732	3	4	9	1	0	0	0	0	1	0	0	0	257	1116	39	1	3591	1	ADAMTS12	5	33649732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53608	33649732	147265528	6492	14643											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658333	33658333	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaagccagagggagtccCgaatcttcattgatgttaca	11	8	2	3	rs74737607	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33658333	A	A	33658333	2	1	9	1	0	0	0	0	0	0	0	1	257	639	23	1		1	ADAMTS12	5	33658333	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8601	33658333	147256927	6493	14644											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658359	33658359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattgatgttacaactgcGgtgaggctgacacattcctg	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33658359	T	T	33658359	3	4	9	1	0	0	0	0	1	0	0	0	257	1116	39	1	3736	1	ADAMTS12	5	33658359	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	33658359	147256901	6494	14645											
ADAMTS12	81792	broad.mit.edu	37	chr5	33683981	33683981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccatgttcatgatggtgaGgatgtaggactccacattct	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33683981	T	T	33683981	3	4	9	1	0	0	0	0	1	0	0	0	257	1000	35	2	4054	2	ADAMTS12	5	33683981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25622	33683981	147231279	6495	14646											
ADAMTS12	81792	broad.mit.edu	37	chr5	33751510	33751510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatgtgagtcacaataccCtttaatccacaggttggctc	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33751510	A	A	33751510	3	1	9	1	0	0	0	0	1	0	0	0	257	695	24	2	4239	2	ADAMTS12	5	33751510	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67529	33751510	147163750	6496	14647											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881538	33881538	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcccactggcatctactcGgactggacccaccacgtggt	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33881538	T	T	33881538	2	4	9	1	0	0	0	0	0	0	0	1	257	1124	39	1		1	ADAMTS12	5	33881538	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	130028	33881538	147033722	6497	14648											
ADAMTS12	81792	broad.mit.edu	37	chr5	33891849	33891849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaaccttgcctcctgtccGggaagcgaaccgggcctggc	12	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33891849	T	T	33891849	3	4	9	1	0	0	0	0	1	0	0	0	257	1116	39	1	4767	1	ADAMTS12	5	33891849	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10311	33891849	147023411	6498	14649											
ADAMTS12	81792	broad.mit.edu	37	chr5	33891861	33891861	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtccgggaagcgaaccGggcctggctgaggctgtctc	15	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33891861	T	T	33891861	3	4	9	1	0	0	0	0	1	0	0	0	257	1116	39	1	4779	1	ADAMTS12	5	33891861	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	33891861	147023399	6499	14650											
SLC45A2	51151	broad.mit.edu	37	chr5	33947241	33947241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgagtctggatgttaccCaaggcagaggttcaatgaca	12	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33947241	A	A	33947241	1	1	9	0	1	0	0	0	0	0	0	0	14755	609	21	2		2	SLC45A2	5	33947241	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55380	33947241	146968019	6500	14651											
SLC45A2	51151	broad.mit.edu	37	chr5	33954606	33954606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttaatgtcattgccctgcGagtctgaaataaaacatgaa	7	8	2	2	rs148480891		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33954606	T	T	33954606	3	4	9	1	0	0	0	0	1	0	0	0	14755	1058	37	3	731	3	SLC45A2	5	33954606	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7365	33954606	146960654	6501	14652											
AMACR	23600	broad.mit.edu	37	chr5	33989412	33989412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggtgataaacgagcccCgttccttgttgtgatcatga	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33989412	A	A	33989412	3	1	9	1	0	0	0	0	1	0	0	0	562	652	23	1	275	1	AMACR	5	33989412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34806	33989412	146925848	6502	14653											
AMACR	23600	broad.mit.edu	37	chr5	33997299	33997299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtcataccctatatgaGggttgagagctgtcaccagc	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33997299	T	T	33997299	1	4	9	0	1	0	0	0	0	0	0	0	562	1015	35	2		2	AMACR	5	33997299	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7887	33997299	146917961	6503	14654											
AMACR	23600	broad.mit.edu	37	chr5	34005962	34005962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataagccttggattttccCgctgcagaatctctgggccc	9	12	1	1	rs139273474	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34005962	A	A	34005962	3	1	9	1	0	0	0	0	1	0	0	0	562	652	23	1	1204	1	AMACR	5	34005962	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8663	34005962	146909298	6504	14655											
C1QTNF3	114899	broad.mit.edu	37	chr5	34042970	34042970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctaggtcatctacctcGgggtgcggtagctcatctgg	15	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34042970	T	T	34042970	1	4	9	0	1	0	0	0	0	0	0	0	1984	1103	39	1		1	C1QTNF3	5	34042970	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37008	34042970	146872290	6505	14656											
C1QTNF3	114899	broad.mit.edu	37	chr5	34043052	34043052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagttttaggatggctcCgctctctcactttctccctc	6	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34043052	A	A	34043052	1	1	9	0	1	0	0	0	0	0	0	0	1984	652	23	1		1	C1QTNF3	5	34043052	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	34043052	146872208	6506	14657											
RAI14	26064	broad.mit.edu	37	chr5	34796131	34796131	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacagcccaagatactacCggtatgtggtttttagtctc	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34796131	A	A	34796131	2	1	9	1	0	0	0	0	0	0	0	1	13116	666	23	1		1	RAI14	5	34796131	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	753079	34796131	146119129	6507	14658											
RAI14	26064	broad.mit.edu	37	chr5	34811130	34811130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctaggatgggaatatacCgctgcttcttgctgtacaaa	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34811130	A	A	34811130	3	1	9	1	0	0	0	0	1	0	0	0	13116	652	23	1	555	1	RAI14	5	34811130	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14999	34811130	146104130	6508	14659											
RAI14	26064	broad.mit.edu	37	chr5	34811206	34811206	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggagcagatgtcaattcCaggaacaaaagtggaaggta	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34811206	A	A	34811206	2	1	9	1	0	0	0	0	0	0	0	1	13116	581	21	2		2	RAI14	5	34811206	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	34811206	146104054	6509	14660											
RAI14	26064	broad.mit.edu	37	chr5	34823081	34823081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaatcacccaaggaggcGgaagcagacctaagctttga	11	11	1	2	rs114157087	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34823081	T	T	34823081	2	4	9	1	0	0	0	0	0	0	0	1	13116	1103	39	1		1	RAI14	5	34823081	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11875	34823081	146092179	6510	14661											
RAI14	26064	broad.mit.edu	37	chr5	34824304	34824304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgatgcaatggtacctcGgtcttcctatgaaaaactcc	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34824304	T	T	34824304	3	4	9	1	0	0	0	0	1	0	0	0	13116	1116	39	1	2476	1	RAI14	5	34824304	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1223	34824304	146090956	6511	14662											
TTC23L	153657	broad.mit.edu	37	chr5	34840790	34840790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagatgcaagccagccCcatccgtatcccaactgtta	8	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34840790	A	A	34840790	3	1	9	1	0	0	0	0	1	0	0	0	16817	623	22	2	16	2	TTC23L	5	34840790	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16486	34840790	146074470	6512	14663											
TTC23L	153657	broad.mit.edu	37	chr5	34840802	34840802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagccccatccgtatccCaactgttagcaatgacatcg	7	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34840802	A	A	34840802	3	1	9	1	0	0	0	0	1	0	0	0	16817	594	21	2	28	2	TTC23L	5	34840802	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	34840802	146074458	6513	14664											
TTC23L	153657	broad.mit.edu	37	chr5	34850237	34850237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagtgataagtccatggGgtagagacttctcttccttt	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34850237	T	T	34850237	1	4	9	0	1	0	0	0	0	0	0	0	16817	1247	43	2		2	TTC23L	5	34850237	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9435	34850237	146065023	6514	14665											
TTC23L	153657	broad.mit.edu	37	chr5	34850336	34850336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatgtgtcatcctttctcGgattatttttggggaccatc	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34850336	T	T	34850336	3	4	9	1	0	0	0	0	1	0	0	0	16817	1116	39	1	312	1	TTC23L	5	34850336	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99	34850336	146064924	6515	14666											
TTC23L	153657	broad.mit.edu	37	chr5	34850347	34850347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttctcggattatttttGgggaccatcactggaaatgt	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34850347	T	T	34850347	3	4	9	1	0	0	0	0	1	0	0	0	16817	1348	47	2	323	2	TTC23L	5	34850347	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	34850347	146064913	6516	14667											
RAD1	5810	broad.mit.edu	37	chr5	34908988	34908988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcctctgttatctgtcCgaatagataccttacaagat	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34908988	A	A	34908988	3	1	9	1	0	0	0	0	1	0	0	0	13086	652	23	1	121	1	RAD1	5	34908988	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58641	34908988	146006272	6517	14668											
RAD1	5810	broad.mit.edu	37	chr5	34908999	34908999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctgtccgaatagatacCttacaagataggactaatgc	7	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34908999	A	A	34908999	3	1	9	1	0	0	0	0	1	0	0	0	13086	680	24	2	132	2	RAD1	5	34908999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	34908999	146006261	6518	14669											
BRIX1	55299	broad.mit.edu	37	chr5	34923182	34923182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctttaaaattagctatcCaaaatatacatgatatatct	2	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34923182	A	A	34923182	1	1	9	0	1	0	0	0	0	0	0	0	1524	609	21	2		2	BRIX1	5	34923182	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14183	34923182	145992078	6519	14670											
DNAJC21	134218	broad.mit.edu	37	chr5	34935837	34935837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgataatcatagagaggccCtacttaaaggtgggtttgat	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34935837	A	A	34935837	3	1	9	1	0	0	0	0	1	0	0	0	4680	680	24	2	224	2	DNAJC21	5	34935837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12655	34935837	145979423	6520	14671											
DNAJC21	134218	broad.mit.edu	37	chr5	34936260	34936260	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttttagggattttacacGgtgtatcgtaatgtttttga	10	3	0	1	rs147400420	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34936260	T	T	34936260	2	4	9	1	0	0	0	0	0	0	0	1	4680	1103	39	1		1	DNAJC21	5	34936260	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	423	34936260	145979000	6521	14672											
DNAJC21	134218	broad.mit.edu	37	chr5	34937567	34937567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaacaaaaagattcGggacaaagcaaggaaagaga	10	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34937567	T	T	34937567	3	4	9	1	0	0	0	0	1	0	0	0	4680	1116	39	1	593	1	DNAJC21	5	34937567	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1307	34937567	145977693	6522	14673											
DNAJC21	134218	broad.mit.edu	37	chr5	34945004	34945004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagaagtcaaagaagcatcGggaaatggtggccttgctaa	13	7	1	2	rs142389949	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34945004	T	T	34945004	3	4	9	1	0	0	0	0	1	0	0	0	4680	1116	39	1	1046	1	DNAJC21	5	34945004	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7437	34945004	145970256	6523	14674											
AGXT2	64902	broad.mit.edu	37	chr5	35003904	35003904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgccaacgaggagtccCatgtgcttgcagtcctcatg	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35003904	A	A	35003904	3	1	9	1	0	0	0	0	1	0	0	0	405	594	21	2	151	2	AGXT2	5	35003904	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58900	35003904	145911356	6524	14675											
AGXT2	64902	broad.mit.edu	37	chr5	35014131	35014131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccatgggaaagccattccCaatccctttagccatggtga	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35014131	A	A	35014131	3	1	9	1	0	0	0	0	1	0	0	0	405	594	21	2	507	2	AGXT2	5	35014131	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10227	35014131	145901129	6525	14676											
AGXT2	64902	broad.mit.edu	37	chr5	35037071	35037071	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggctcaggaagaagtgcGgcaagcttctctgcatattc	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35037071	T	T	35037071	2	4	9	1	0	0	0	0	0	0	0	1	405	1103	39	1		1	AGXT2	5	35037071	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22940	35037071	145878189	6526	14677											
AGXT2	64902	broad.mit.edu	37	chr5	35039463	35039463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactgacagtaacaatccCggaaaagaaatccaggtatc	7	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35039463	A	A	35039463	3	1	9	1	0	0	0	0	1	0	0	0	405	652	23	1	1264	1	AGXT2	5	35039463	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2392	35039463	145875797	6527	14678											
PRLR	5618	broad.mit.edu	37	chr5	35065409	35065409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttgttatccatgacccCggacaccttggcatactcct	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35065409	A	A	35065409	3	1	9	1	0	0	0	0	1	0	0	0	12637	652	23	1	221	1	PRLR	5	35065409	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25946	35065409	145849851	6528	14679											
PRLR	5618	broad.mit.edu	37	chr5	35065832	35065832	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgttgaacatttggatcCaccagcatgaaaatagggga	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35065832	A	A	35065832	4	1	9	1	0	0	0	0	0	1	0	0	12637	603	21	2	644	2	PRLR	5	35065832	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	423	35065832	145849428	6529	14680											
PRLR	5618	broad.mit.edu	37	chr5	35072698	35072698	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccactcagctgctttctcGggttttaatcgaatttcata	6	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35072698	T	T	35072698	2	4	9	1	0	0	0	0	0	0	0	1	12637	1103	39	1		1	PRLR	5	35072698	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6866	35072698	145842562	6530	14681											
PRLR	5618	broad.mit.edu	37	chr5	35072754	35072754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagtttttaagtcaatcaGggtaggtggagaccatttaa	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35072754	T	T	35072754	3	4	9	1	0	0	0	0	1	0	0	0	12637	991	35	2	1422	2	PRLR	5	35072754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	35072754	145842506	6531	14682											
PRLR	5618	broad.mit.edu	37	chr5	35084534	35084534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actattggctaatacatagtGgagtaagaaattcctcaccc	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35084534	T	T	35084534	1	4	9	0	1	0	0	0	0	0	0	0	12637	1363	47	2		2	PRLR	5	35084534	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11780	35084534	145830726	6532	14683											
SPEF2	79925	broad.mit.edu	37	chr5	35641564	35641564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaaacttaataatttttctCgcttggagccaacacttaac	4	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35641564	A	A	35641564	3	1	9	1	0	0	0	0	1	0	0	0	15153	884	31	3	203	3	SPEF2	5	35641564	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	557030	35641564	145273696	6533	14684											
SPEF2	79925	broad.mit.edu	37	chr5	35644556	35644556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgaaagaagatcttgccCatttgcattttgagaaactt	8	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35644556	A	A	35644556	3	1	9	1	0	0	0	0	1	0	0	0	15153	594	21	2	528	2	SPEF2	5	35644556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2992	35644556	145270704	6534	14685											
SPEF2	79925	broad.mit.edu	37	chr5	35644656	35644656	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaactattttttcagaaattCattagtgcatagtatacagt	6	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35644656	T	T	35644656	1	4	9	0	1	0	0	0	0	0	0	0	15153	841	29	4		4	SPEF2	5	35644656	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	100	35644656	145270604	6535	14686											
SPEF2	79925	broad.mit.edu	37	chr5	35646705	35646705	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttatatatttgtacctatGagtgtattatattgcctatt	5	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35646705	T	T	35646705	1	4	9	0	1	0	0	0	0	0	0	0	15153	1305	45	3		3	SPEF2	5	35646705	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2049	35646705	145268555	6536	14687											
SPEF2	79925	broad.mit.edu	37	chr5	35646870	35646870	+	Silent	SNP	C	A	A													aatcgtactttgaaagcactCgaggcccaaaaaatgatgaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35646870	A	A	35646870	2	1	9	1	0	0	0	0	0	0	0	1	15153	871	31	3		3	SPEF2	5	35646870	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	165	35646870	145268390	6537	14688	92	2									
SPEF2	79925	broad.mit.edu	37	chr5	35646877	35646877	+	Missense_Mutation	SNP	C	A	A													ctttgaaagcactcgaggccCaaaaaatgatgaaaaagaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35646877	A	A	35646877	3	1	9	1	0	0	0	0	1	0	0	0	15153	595	21	2	712	2	SPEF2	5	35646877	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	35646877	145268383	6538	14689	92	2									
SPEF2	79925	broad.mit.edu	37	chr5	35670259	35670259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagacactacctgctaaccCctcaagagaacaacttacag	5	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35670259	A	A	35670259	3	1	9	1	0	0	0	0	1	0	0	0	15153	623	22	2	1492	2	SPEF2	5	35670259	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23382	35670259	145245001	6539	14690											
SPEF2	79925	broad.mit.edu	37	chr5	35691309	35691309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttaaaggatgcttattGgggaaaacattaagtggaaa	12	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35691309	T	T	35691309	3	4	9	1	0	0	0	0	1	0	0	0	15153	1339	47	2	1758	2	SPEF2	5	35691309	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21050	35691309	145223951	6540	14691											
SPEF2	79925	broad.mit.edu	37	chr5	35692570	35692570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaaaagactgttctagcGggcctgaaagacagtgttat	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35692570	T	T	35692570	1	4	9	0	1	0	0	0	0	0	0	0	15153	1131	39	1		1	SPEF2	5	35692570	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1261	35692570	145222690	6541	14692											
SPEF2	79925	broad.mit.edu	37	chr5	35753642	35753642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagagacatttttaagagaGgcaaaggattttagttttat	9	2	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35753642	T	T	35753642	1	4	9	0	1	0	0	0	0	0	0	0	15153	1015	35	2		2	SPEF2	5	35753642	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	61072	35753642	145161618	6542	14693											
SPEF2	79925	broad.mit.edu	37	chr5	35753709	35753709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaagcatagccaccatgcCtgttttttctgttcaggatc	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35753709	A	A	35753709	1	1	9	0	1	0	0	0	0	0	0	0	15153	696	24	2		2	SPEF2	5	35753709	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	67	35753709	145161551	6543	14694											
SPEF2	79925	broad.mit.edu	37	chr5	35753738	35753738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcaggatctgcgagacCgcctgtgggacatttgtgat	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35753738	A	A	35753738	3	1	9	1	0	0	0	0	1	0	0	0	15153	652	23	1	3458	1	SPEF2	5	35753738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	35753738	145161522	6544	14695											
SPEF2	79925	broad.mit.edu	37	chr5	35753776	35753776	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcccggaaggaagaggcGgagcaggagcggcttgacat	18	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35753776	T	T	35753776	2	4	9	1	0	0	0	0	0	0	0	1	15153	1103	39	1		1	SPEF2	5	35753776	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	35753776	145161484	6545	14696											
SPEF2	79925	broad.mit.edu	37	chr5	35759743	35759743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatggaaagtaaaatccCagtagaggacaacaagagat	12	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35759743	A	A	35759743	3	1	9	1	0	0	0	0	1	0	0	0	15153	594	21	2	3661	2	SPEF2	5	35759743	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5967	35759743	145155517	6546	14697											
SPEF2	79925	broad.mit.edu	37	chr5	35759769	35759769	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggacaacaagagatttactCgaatccctttggtccaactg	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35759769	A	A	35759769	2	1	9	1	0	0	0	0	0	0	0	1	15153	876	31	3		3	SPEF2	5	35759769	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	35759769	145155491	6547	14698											
SPEF2	79925	broad.mit.edu	37	chr5	35763718	35763718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcaagatggataactccCtagaaaacgttgagtccaac	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35763718	A	A	35763718	3	1	9	1	0	0	0	0	1	0	0	0	15153	680	24	2	3838	2	SPEF2	5	35763718	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3949	35763718	145151542	6548	14699											
SPEF2	79925	broad.mit.edu	37	chr5	35793352	35793352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaatgccttggcccattcCcttggaggaggagctccttg	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35793352	A	A	35793352	3	1	9	1	0	0	0	0	1	0	0	0	15153	623	22	2	4793	2	SPEF2	5	35793352	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29634	35793352	145121908	6549	14700											
SPEF2	79925	broad.mit.edu	37	chr5	35800155	35800155	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctttactttgcttgccaccCagacaccgtggaaggagtct	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35800155	G	G	35800155	3	3	9	1	0	0	0	0	1	0	0	0	15153	594	21	4	5071	4	SPEF2	5	35800155	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6803	35800155	145115105	6550	14701											
SPEF2	79925	broad.mit.edu	37	chr5	35807389	35807389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgctctaatttggttGggctccagttcaggacatgc	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35807389	T	T	35807389	1	4	9	0	1	0	0	0	0	0	0	0	15153	1363	47	2		2	SPEF2	5	35807389	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7234	35807389	145107871	6551	14702											
IL7R	3575	broad.mit.edu	37	chr5	35876433	35876433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacctcctgcttagccttGggactacaaacagcacgctg	10	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35876433	T	T	35876433	3	4	9	1	0	0	0	0	1	0	0	0	7775	1348	47	2	1255	2	IL7R	5	35876433	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69044	35876433	145038827	6552	14703											
UGT3A1	133688	broad.mit.edu	37	chr5	35955843	35955843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cataatttttggctactactCggaccatgtttccatgctgg	8	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35955843	A	A	35955843	3	1	9	1	0	0	0	0	1	0	0	0	17089	884	31	3	380	3	UGT3A1	5	35955843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79410	35955843	144959417	6553	14704											
UGT3A1	133688	broad.mit.edu	37	chr5	35991209	35991209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggcagtgcggggatccGggacgcgcctgtctgggaat	17	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35991209	T	T	35991209	1	4	9	0	1	0	0	0	0	0	0	0	17089	1131	39	1		1	UGT3A1	5	35991209	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35366	35991209	144924051	6554	14705											
UGT3A2	167127	broad.mit.edu	37	chr5	36039682	36039682	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccatatcaccccttgGggtaggtgagcaaaggcatt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36039682	T	T	36039682	2	4	9	1	0	0	0	0	0	0	0	1	17090	1219	43	2		2	UGT3A2	5	36039682	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48473	36039682	144875578	6555	14706											
UGT3A2	167127	broad.mit.edu	37	chr5	36066758	36066758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggcagtgcgagtatccGggacgcgcctgtctgggaat	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36066758	T	T	36066758	1	4	9	0	1	0	0	0	0	0	0	0	17090	1131	39	1		1	UGT3A2	5	36066758	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27076	36066758	144848502	6556	14707											
LMBRD2	92255	broad.mit.edu	37	chr5	36136394	36136394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgactattgcttataaGgttcaaacttgcttacctcc	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36136394	T	T	36136394	1	4	9	0	1	0	0	0	0	0	0	0	8917	1015	35	2		2	LMBRD2	5	36136394	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	69636	36136394	144778866	6557	14708											
LMBRD2	92255	broad.mit.edu	37	chr5	36142613	36142613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaataccttggaacaGggttagcagttgcgtacaat	11	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36142613	T	T	36142613	3	4	9	1	0	0	0	0	1	0	0	0	8917	1000	35	2	1888	2	LMBRD2	5	36142613	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6219	36142613	144772647	6558	14709											
SKP2	6502	broad.mit.edu	37	chr5	36152434	36152434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaataattcttttaggcCgcgaatatcgctactggcta	7	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36152434	A	A	36152434	1	1	9	0	1	0	0	0	0	0	0	0	14475	667	23	1		1	SKP2	5	36152434	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9821	36152434	144762826	6559	14710											
SKP2	6502	broad.mit.edu	37	chr5	36168335	36168335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgattggctgctcatttgGggagaagaggggtctggttt	17	4	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36168335	T	T	36168335	1	4	9	0	1	0	0	0	0	0	0	0	14475	1247	43	2		2	SKP2	5	36168335	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15901	36168335	144746925	6560	14711											
SKP2	6502	broad.mit.edu	37	chr5	36168351	36168351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggggagaagaggggtctGgtttgaaattggatgtaccc	16	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36168351	T	T	36168351	1	4	9	0	1	0	0	0	0	0	0	0	14475	1363	47	2		2	SKP2	5	36168351	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16	36168351	144746909	6561	14712											
SKP2	6502	broad.mit.edu	37	chr5	36168362	36168362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtctggtttgaaattGgatgtacccgtgagagccac	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36168362	T	T	36168362	1	4	9	0	1	0	0	0	0	0	0	0	14475	1363	47	2		2	SKP2	5	36168362	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	36168362	144746898	6562	14713											
SKP2	6502	broad.mit.edu	37	chr5	36171793	36171793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtcagagaccatcaccCagctgaatcttagcggctac	9	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36171793	A	A	36171793	3	1	9	1	0	0	0	0	1	0	0	0	14475	595	21	2	885	2	SKP2	5	36171793	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3431	36171793	144743467	6563	14714											
C5orf33	133686	broad.mit.edu	37	chr5	36207260	36207260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacttgataagcaacatccCaagttactcaccaggccttt	5	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36207260	A	A	36207260	1	1	9	0	1	0	0	0	0	0	0	0	2315	609	21	2		2	C5orf33	5	36207260	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35467	36207260	144708000	6564	14715											
C5orf33	133686	broad.mit.edu	37	chr5	36211948	36211948	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaggtttaaaagtacctGgatgacagactctccccaat	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36211948	T	T	36211948	2	4	9	1	0	0	0	0	0	0	0	1	2315	1335	47	2		2	C5orf33	5	36211948	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4688	36211948	144703312	6565	14716											
C5orf33	133686	broad.mit.edu	37	chr5	36212004	36212004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctcactggcagaagttGgggtcctgaagcctcagacc	12	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36212004	T	T	36212004	3	4	9	1	0	0	0	0	1	0	0	0	2315	1357	47	2	550	2	C5orf33	5	36212004	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	36212004	144703256	6566	14717											
C5orf33	133686	broad.mit.edu	37	chr5	36219775	36219775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggcaggcataaatgaccCtcagacctatattttaacag	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36219775	A	A	36219775	3	1	9	1	0	0	0	0	1	0	0	0	2315	680	24	2	793	2	C5orf33	5	36219775	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7771	36219775	144695485	6567	14718											
RANBP3L	202151	broad.mit.edu	37	chr5	36262162	36262162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgaaagtaaagaaatcCatcaaaaagtttataaagac	5	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36262162	A	A	36262162	1	1	9	0	1	0	0	0	0	0	0	0	13138	609	21	2		2	RANBP3L	5	36262162	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42387	36262162	144653098	6568	14719											
SLC1A3	6507	broad.mit.edu	37	chr5	36608592	36608592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagattccagcagggagtcCgtaaacgcacacttttggcc	11	11	0	1	rs11543905		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36608592	A	A	36608592	3	1	9	1	0	0	0	0	1	0	0	0	14546	652	23	1	69	1	SLC1A3	5	36608592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	346430	36608592	144306668	6569	14720											
SLC1A3	6507	broad.mit.edu	37	chr5	36608612	36608612	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaaacgcacacttttggcCaagaagaaagtgcagaacat	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36608612	A	A	36608612	2	1	9	1	0	0	0	0	0	0	0	1	14546	581	21	2		2	SLC1A3	5	36608612	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	36608612	144306648	6570	14721											
SLC1A3	6507	broad.mit.edu	37	chr5	36679741	36679741	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaggtatgcccccgtGggtattctcttcctgattgc	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36679741	T	T	36679741	2	4	9	1	0	0	0	0	0	0	0	1	14546	1335	47	2		2	SLC1A3	5	36679741	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	71129	36679741	144235519	6571	14722											
SLC1A3	6507	broad.mit.edu	37	chr5	36679822	36679822	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagcttgccatgtacacCgtgactgtcattgttggctt	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36679822	A	A	36679822	2	1	9	1	0	0	0	0	0	0	0	1	14546	639	23	1		1	SLC1A3	5	36679822	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	36679822	144235438	6572	14723											
SLC1A3	6507	broad.mit.edu	37	chr5	36680578	36680578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccagattcgtgctcccCgtaggagccaccattaacat	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36680578	A	A	36680578	2	1	9	1	0	0	0	0	0	0	0	1	14546	639	23	1		1	SLC1A3	5	36680578	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	756	36680578	144234682	6573	14724											
SLC1A3	6507	broad.mit.edu	37	chr5	36684086	36684086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatcacgctcatcatcgcGgtggactggttcctgtgagt	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36684086	T	T	36684086	2	4	9	1	0	0	0	0	0	0	0	1	14546	1103	39	1		1	SLC1A3	5	36684086	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3508	36684086	144231174	6574	14725											
NIPBL	25836	broad.mit.edu	37	chr5	36953862	36953862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattgctagtctcacagacCgtaagtttggttaatttatc	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36953862	A	A	36953862	3	1	9	1	0	0	0	0	1	0	0	0	10523	666	23	1	66	1	NIPBL	5	36953862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	269776	36953862	143961398	6575	14726											
NIPBL	25836	broad.mit.edu	37	chr5	36962209	36962209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttatatttttttatttGggttttgggttttagccggt	9	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36962209	T	T	36962209	1	4	9	0	1	0	0	0	0	0	0	0	10523	1363	47	2		2	NIPBL	5	36962209	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8347	36962209	143953051	6576	14727											
NIPBL	25836	broad.mit.edu	37	chr5	36976221	36976221	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagacttcaaaaacaccCattactccacaagatataaa	4	11	1	2	rs80358349	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36976221	A	A	36976221	2	1	9	1	0	0	0	0	0	0	0	1	10523	581	21	2		2	NIPBL	5	36976221	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14012	36976221	143939039	6577	14728											
NIPBL	25836	broad.mit.edu	37	chr5	36984866	36984866	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccagcttctcaggagacGggttctacgggaaatgggtc	14	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36984866	T	T	36984866	2	4	9	1	0	0	0	0	0	0	0	1	10523	1103	39	1		1	NIPBL	5	36984866	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8645	36984866	143930394	6578	14729											
NIPBL	25836	broad.mit.edu	37	chr5	36984892	36984892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgggaaatgggtcaaggcCagcattaatggttagcattg	13	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36984892	A	A	36984892	3	1	9	1	0	0	0	0	1	0	0	0	10523	594	21	2	1644	2	NIPBL	5	36984892	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	36984892	143930368	6579	14730											
NIPBL	25836	broad.mit.edu	37	chr5	36984957	36984957	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actctcaggcttctataactCaggattcagactccataaaa	5	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36984957	A	A	36984957	3	1	9	1	0	0	0	0	1	0	0	0	10523	827	29	3	1709	3	NIPBL	5	36984957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	36984957	143930303	6580	14731											
NIPBL	25836	broad.mit.edu	37	chr5	36985330	36985330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagactgtctgacacaaaacCaaatgacaacaaacaaaata	4	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36985330	A	A	36985330	3	1	9	1	0	0	0	0	1	0	0	0	10523	594	21	2	2082	2	NIPBL	5	36985330	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	373	36985330	143929930	6581	14732											
NIPBL	25836	broad.mit.edu	37	chr5	37003464	37003464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcatgtaagtttaagatcCatactgttaattttaccctt	4	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37003464	A	A	37003464	1	1	9	0	1	0	0	0	0	0	0	0	10523	609	21	2		2	NIPBL	5	37003464	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18134	37003464	143911796	6582	14733											
NIPBL	25836	broad.mit.edu	37	chr5	37007469	37007469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgggctaaatgttctaccCataagcagagagtaatagta	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37007469	A	A	37007469	3	1	9	1	0	0	0	0	1	0	0	0	10523	594	21	2	4198	2	NIPBL	5	37007469	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4005	37007469	143907791	6583	14734											
NIPBL	25836	broad.mit.edu	37	chr5	37008702	37008702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctattataagtttaacttGgaatcttataattactaaac	3	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37008702	T	T	37008702	1	4	9	0	1	0	0	0	0	0	0	0	10523	1363	47	2		2	NIPBL	5	37008702	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1233	37008702	143906558	6584	14735											
NIPBL	25836	broad.mit.edu	37	chr5	37014839	37014839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagctatgcgaacagccCaaaacttcctctccatcttc	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37014839	A	A	37014839	3	1	9	1	0	0	0	0	1	0	0	0	10523	595	21	2	4697	2	NIPBL	5	37014839	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6137	37014839	143900421	6585	14736											
NIPBL	25836	broad.mit.edu	37	chr5	37020895	37020895	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgaactctgatactgtGgactatgatgatgcttgctt	11	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37020895	T	T	37020895	2	4	9	1	0	0	0	0	0	0	0	1	10523	1335	47	2		2	NIPBL	5	37020895	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6056	37020895	143894365	6586	14737											
NIPBL	25836	broad.mit.edu	37	chr5	37045584	37045584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcaacaccaagaggaccCaaataacacttcacttctaa	4	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37045584	A	A	37045584	3	1	9	1	0	0	0	0	1	0	0	0	10523	594	21	2	6525	2	NIPBL	5	37045584	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24689	37045584	143869676	6587	14738											
NIPBL	25836	broad.mit.edu	37	chr5	37045639	37045639	+	Silent	SNP	C	A	A													cttcttagatcccttttcacCgttggagcactatgtcggca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37045639	A	A	37045639	2	1	9	1	0	0	0	0	0	0	0	1	10523	639	23	1		1	NIPBL	5	37045639	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	37045639	143869621	6588	14739	93	2									
NIPBL	25836	broad.mit.edu	37	chr5	37045643	37045643	+	Nonsense_Mutation	SNP	G	T	T													ttagatcccttttcaccgttGgagcactatgtcggcatttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37045643	T	T	37045643	4	4	9	1	0	0	0	0	0	1	0	0	10523	1349	47	2	6584	2	NIPBL	5	37045643	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	37045643	143869617	6589	14740	93	2									
NIPBL	25836	broad.mit.edu	37	chr5	37045705	37045705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcaacagcaaggtaaaGgtagtaatacttaaaatgct	9	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37045705	T	T	37045705	1	4	9	0	1	0	0	0	0	0	0	0	10523	1015	35	2		2	NIPBL	5	37045705	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	62	37045705	143869555	6590	14741											
NIPBL	25836	broad.mit.edu	37	chr5	37048625	37048625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgcctttattcagcatcCaagtctaatgttcgagcaag	7	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37048625	A	A	37048625	3	1	9	1	0	0	0	0	1	0	0	0	10523	594	21	2	6761	2	NIPBL	5	37048625	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2920	37048625	143866635	6591	14742											
NIPBL	25836	broad.mit.edu	37	chr5	37048689	37048689	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttatctgataagaactcCtcagtcaatttaaaaataca	3	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37048689	A	A	37048689	2	1	9	1	0	0	0	0	0	0	0	1	10523	668	24	2		2	NIPBL	5	37048689	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	37048689	143866571	6592	14743											
NIPBL	25836	broad.mit.edu	37	chr5	37052603	37052603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacctttactccatgatcCgtggaaaccgccaacacaga	6	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37052603	A	A	37052603	3	1	9	1	0	0	0	0	1	0	0	0	10523	652	23	1	7360	1	NIPBL	5	37052603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3914	37052603	143862657	6593	14744											
NIPBL	25836	broad.mit.edu	37	chr5	37064664	37064664	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacgaaattcagactctacGgagttggcagcacagatgaa	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37064664	T	T	37064664	2	4	9	1	0	0	0	0	0	0	0	1	10523	1103	39	1		1	NIPBL	5	37064664	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12061	37064664	143850596	6594	14745											
NIPBL	25836	broad.mit.edu	37	chr5	37064970	37064970	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttacgatccctgtatgcCgccaaggatgggacttccag	10	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37064970	A	A	37064970	2	1	9	1	0	0	0	0	0	0	0	1	10523	639	23	1		1	NIPBL	5	37064970	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	306	37064970	143850290	6595	14746											
C5orf42	65250	broad.mit.edu	37	chr5	37108561	37108561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgctgcagactatgacacGgagcattagagccttttaag	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37108561	T	T	37108561	3	4	9	1	0	0	0	0	1	0	0	0	2324	1116	39	1	350	1	C5orf42	5	37108561	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43591	37108561	143806699	6596	14747											
C5orf42	65250	broad.mit.edu	37	chr5	37164405	37164405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgaagtcatccaaaggatGggaaccacaatgttcttgtt	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37164405	T	T	37164405	3	4	9	1	0	0	0	0	1	0	0	0	2324	1348	47	2	2099	2	C5orf42	5	37164405	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55844	37164405	143750855	6597	14748											
C5orf42	65250	broad.mit.edu	37	chr5	37169651	37169651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacataaaggaatactccCatgtggaacattctggaaga	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37169651	A	A	37169651	3	1	9	1	0	0	0	0	1	0	0	0	2324	594	21	2	3194	2	C5orf42	5	37169651	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5246	37169651	143745609	6598	14749											
C5orf42	65250	broad.mit.edu	37	chr5	37170233	37170233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctctggcgttctctccCattgactgtggtttaataaa	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37170233	A	A	37170233	3	1	9	1	0	0	0	0	1	0	0	0	2324	594	21	2	3301	2	C5orf42	5	37170233	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	582	37170233	143745027	6599	14750											
C5orf42	65250	broad.mit.edu	37	chr5	37176063	37176063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattgaggagtggtatgccCaggatgtgaaaaggcttcga	15	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37176063	A	A	37176063	3	1	9	1	0	0	0	0	1	0	0	0	2324	594	21	2	3755	2	C5orf42	5	37176063	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5830	37176063	143739197	6600	14751											
C5orf42	65250	broad.mit.edu	37	chr5	37177823	37177823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttaaaatgaatagtaccCaaaaagaaaacaggtaaaac	6	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37177823	A	A	37177823	1	1	9	0	1	0	0	0	0	0	0	0	2324	609	21	2		2	C5orf42	5	37177823	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1760	37177823	143737437	6601	14752											
C5orf42	65250	broad.mit.edu	37	chr5	37201713	37201713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcactaagaatagctggctGgggacagtacaatggaggag	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37201713	T	T	37201713	3	4	9	1	0	0	0	0	1	0	0	0	2324	1357	47	2	6242	2	C5orf42	5	37201713	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23890	37201713	143713547	6602	14753											
C5orf42	65250	broad.mit.edu	37	chr5	37209554	37209554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccagacatttaaggatcGgggtatactggaaacactca	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37209554	T	T	37209554	1	4	9	0	1	0	0	0	0	0	0	0	2324	1131	39	1		1	C5orf42	5	37209554	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7841	37209554	143705706	6603	14754											
C5orf42	65250	broad.mit.edu	37	chr5	37209648	37209648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaactgcaacctcagtcCatttcagtgcaagggagctc	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37209648	A	A	37209648	1	1	9	0	1	0	0	0	0	0	0	0	2324	609	21	2		2	C5orf42	5	37209648	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	37209648	143705612	6604	14755											
C5orf42	65250	broad.mit.edu	37	chr5	37210711	37210711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattagagtctgtcaaagccCagtctttggcaataacaaaa	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37210711	A	A	37210711	1	1	9	0	1	0	0	0	0	0	0	0	2324	609	21	2		2	C5orf42	5	37210711	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1063	37210711	143704549	6605	14756											
C5orf42	65250	broad.mit.edu	37	chr5	37211524	37211524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacattacttccagttccCcggaaagacgtatttttgca	6	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37211524	A	A	37211524	1	1	9	0	1	0	0	0	0	0	0	0	2324	638	22	2		2	C5orf42	5	37211524	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	813	37211524	143703736	6606	14757											
C5orf42	65250	broad.mit.edu	37	chr5	37211577	37211577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctgagcagcctcaagtGggcacacttaaagaagaaag	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37211577	T	T	37211577	1	4	9	0	1	0	0	0	0	0	0	0	2324	1363	47	2		2	C5orf42	5	37211577	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	37211577	143703683	6607	14758											
C5orf42	65250	broad.mit.edu	37	chr5	37211647	37211647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcctcaaggctatgcGggggcacttcctccagacgc	13	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37211647	T	T	37211647	1	4	9	0	1	0	0	0	0	0	0	0	2324	1131	39	1		1	C5orf42	5	37211647	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	37211647	143703613	6608	14759											
C5orf42	65250	broad.mit.edu	37	chr5	37212403	37212403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggtccaggaaggctccCtagtggacacactgcaatgt	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37212403	A	A	37212403	1	1	9	0	1	0	0	0	0	0	0	0	2324	696	24	2		2	C5orf42	5	37212403	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	756	37212403	143702857	6609	14760											
NUP155	9631	broad.mit.edu	37	chr5	37293005	37293005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaatttaaaacttggctgGgattctcaacatatcttatc	5	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37293005	T	T	37293005	3	4	9	1	0	0	0	0	1	0	0	0	10851	1232	43	2	170	2	NUP155	5	37293005	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80602	37293005	143622255	6610	14761											
NUP155	9631	broad.mit.edu	37	chr5	37304910	37304910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatactaaagagctcatcCttggatcgctgtgacaattt	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37304910	A	A	37304910	3	1	9	1	0	0	0	0	1	0	0	0	10851	680	24	2	1118	2	NUP155	5	37304910	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11905	37304910	143610350	6611	14762											
NUP155	9631	broad.mit.edu	37	chr5	37310691	37310691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagtgctatatagaagtGggcagatatcctgtaaatgt	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37310691	T	T	37310691	3	4	9	1	0	0	0	0	1	0	0	0	10851	1348	47	2	1636	2	NUP155	5	37310691	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5781	37310691	143604569	6612	14763											
NUP155	9631	broad.mit.edu	37	chr5	37310732	37310732	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactaatgccatcaacagcGgcattatctctgatgtagca	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37310732	T	T	37310732	2	4	9	1	0	0	0	0	0	0	0	1	10851	1103	39	1		1	NUP155	5	37310732	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41	37310732	143604528	6613	14764											
NUP155	9631	broad.mit.edu	37	chr5	37318126	37318126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttcctgttgcatttgctGgggatttccgttttcaggac	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37318126	T	T	37318126	3	4	9	1	0	0	0	0	1	0	0	0	10851	1357	47	2	1966	2	NUP155	5	37318126	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7394	37318126	143597134	6614	14765											
NUP155	9631	broad.mit.edu	37	chr5	37326061	37326061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaactaagcttgcatccCaaatgtttctggaaaaaaaa	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37326061	A	A	37326061	3	1	9	1	0	0	0	0	1	0	0	0	10851	595	21	2	2210	2	NUP155	5	37326061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7935	37326061	143589199	6615	14766											
NUP155	9631	broad.mit.edu	37	chr5	37350325	37350325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagtgagctctttgagtGgtttattttcctacatcttt	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37350325	T	T	37350325	3	4	9	1	0	0	0	0	1	0	0	0	10851	1348	47	2	3525	2	NUP155	5	37350325	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24264	37350325	143564935	6616	14767											
WDR70	55100	broad.mit.edu	37	chr5	37381751	37381751	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcaatgtttgaacaaactCgaaggacagctgtggaaaga	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37381751	A	A	37381751	2	1	9	1	0	0	0	0	0	0	0	1	17448	876	31	3		3	WDR70	5	37381751	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31426	37381751	143533509	6617	14768											
WDR70	55100	broad.mit.edu	37	chr5	37516654	37516654	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catactggctcatggcatccCaaaataaagggagaatttat	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37516654	A	A	37516654	2	1	9	1	0	0	0	0	0	0	0	1	17448	581	21	2		2	WDR70	5	37516654	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	134903	37516654	143398606	6618	14769											
WDR70	55100	broad.mit.edu	37	chr5	37697772	37697772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataggttcatcctaagttcCactataaacaggctcatgac	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37697772	A	A	37697772	3	1	9	1	0	0	0	0	1	0	0	0	17448	594	21	2	1150	2	WDR70	5	37697772	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	181118	37697772	143217488	6619	14770											
WDR70	55100	broad.mit.edu	37	chr5	37697794	37697794	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctataaacaggctcatgactCgggcacagacacttcttgcg	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37697794	A	A	37697794	4	1	9	1	0	0	0	0	0	1	0	0	17448	893	31	3	1172	3	WDR70	5	37697794	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	37697794	143217466	6620	14771											
WDR70	55100	broad.mit.edu	37	chr5	37697850	37697850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggtaatgtccttgcctctCgtggaggtaggttaaaagct	12	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37697850	A	A	37697850	3	1	9	1	0	0	0	0	1	0	0	0	17448	884	31	3	1228	3	WDR70	5	37697850	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	37697850	143217410	6621	14772											
WDR70	55100	broad.mit.edu	37	chr5	37723036	37723036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggactacatcatcaccCgtaagtcgttaacatgcctc	6	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37723036	A	A	37723036	3	1	9	1	0	0	0	0	1	0	0	0	17448	666	23	1	1655	1	WDR70	5	37723036	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25186	37723036	143192224	6622	14773											
GDNF	2668	broad.mit.edu	37	chr5	37816042	37816042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagttaagacacaacccCggtttttgcccctctggcct	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37816042	A	A	37816042	3	1	9	1	0	0	0	0	1	0	0	0	6386	652	23	1	291	1	GDNF	5	37816042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93006	37816042	143099218	6623	14774											
GDNF	2668	broad.mit.edu	37	chr5	37816090	37816090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcctctggaattctctGggttggcagctgcagcctgc	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37816090	T	T	37816090	3	4	9	1	0	0	0	0	1	0	0	0	6386	1348	47	2	339	2	GDNF	5	37816090	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48	37816090	143099170	6624	14775											
GDNF	2668	broad.mit.edu	37	chr5	37834909	37834909	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacttcatcttaaagtccCgtccggcggcggcacctgcg	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37834909	A	A	37834909	1	1	9	0	1	0	0	0	0	0	0	0	6386	667	23	1		1	GDNF	5	37834909	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	18819	37834909	143080351	6625	14776											
EGFLAM	133584	broad.mit.edu	37	chr5	38338876	38338876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctcagccgggacatccCgaccacggtgagtctttcca	10	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38338876	A	A	38338876	3	1	9	1	0	0	0	0	1	0	0	0	5006	652	23	1	294	1	EGFLAM	5	38338876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	503967	38338876	142576384	6626	14777											
EGFLAM	133584	broad.mit.edu	37	chr5	38352350	38352350	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatgtcattgtggtttcGgattctgaggtggccctgtc	12	10	2	1	rs146327095	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38352350	T	T	38352350	2	4	9	1	0	0	0	0	0	0	0	1	5006	1103	39	1		1	EGFLAM	5	38352350	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13474	38352350	142562910	6627	14778											
EGFLAM	133584	broad.mit.edu	37	chr5	38352366	38352366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcggattctgaggtggccCtgtcttggaaacctggagcg	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38352366	A	A	38352366	3	1	9	1	0	0	0	0	1	0	0	0	5006	680	24	2	496	2	EGFLAM	5	38352366	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	38352366	142562894	6628	14779											
EGFLAM	133584	broad.mit.edu	37	chr5	38352386	38352386	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtcttggaaacctggagcGagtgaaggaagcgcccctat	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38352386	T	T	38352386	2	4	9	1	0	0	0	0	0	0	0	1	5006	1045	37	3		3	EGFLAM	5	38352386	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	38352386	142562874	6629	14780											
EGFLAM	133584	broad.mit.edu	37	chr5	38406263	38406263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtggccgctatggacccCgttatatcaccgacatggga	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38406263	A	A	38406263	3	1	9	1	0	0	0	0	1	0	0	0	5006	652	23	1	788	1	EGFLAM	5	38406263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53877	38406263	142508997	6630	14781											
EGFLAM	133584	broad.mit.edu	37	chr5	38427289	38427289	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcaaagacttcctgtcCatcaacttggcagggggcca	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38427289	A	A	38427289	2	1	9	1	0	0	0	0	0	0	0	1	5006	581	21	2		2	EGFLAM	5	38427289	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21026	38427289	142487971	6631	14782											
EGFLAM	133584	broad.mit.edu	37	chr5	38435284	38435284	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagacattttcattggcGgagtccccaattatgatgat	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38435284	T	T	38435284	4	4	9	1	0	0	0	0	0	1	0	0	5006	1117	39	1	2288	1	EGFLAM	5	38435284	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7995	38435284	142479976	6632	14783											
EGFLAM	133584	broad.mit.edu	37	chr5	38435392	38435392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgtttactgggccaccCagactgtagacaaagaaagt	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38435392	A	A	38435392	1	1	9	0	1	0	0	0	0	0	0	0	5006	609	21	2		2	EGFLAM	5	38435392	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	38435392	142479868	6633	14784											
EGFLAM	133584	broad.mit.edu	37	chr5	38438425	38438425	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcatgacttcacctccGgagtgaatgtggagaatgcg	13	8	1	4	rs148322152		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38438425	T	T	38438425	4	4	9	1	0	0	0	0	0	1	0	0	5006	1117	39	1	2412	1	EGFLAM	5	38438425	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3033	38438425	142476835	6634	14785											
EGFLAM	133584	broad.mit.edu	37	chr5	38448427	38448427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagaagccattgagatccCgcagtttatcggccgcagtt	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38448427	A	A	38448427	3	1	9	1	0	0	0	0	1	0	0	0	5006	652	23	1	2573	1	EGFLAM	5	38448427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10002	38448427	142466833	6635	14786											
EGFLAM	133584	broad.mit.edu	37	chr5	38448466	38448466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctgacgtatgacaaccCagatatcttgaagaggtaat	8	8	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38448466	A	A	38448466	3	1	9	1	0	0	0	0	1	0	0	0	5006	594	21	2	2612	2	EGFLAM	5	38448466	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	38448466	142466794	6636	14787											
EGFLAM	133584	broad.mit.edu	37	chr5	38458480	38458480	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacgatggtcggtggcacCgagttaaggccgttaggtga	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38458480	A	A	38458480	2	1	9	1	0	0	0	0	0	0	0	1	5006	644	23	1		1	EGFLAM	5	38458480	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10014	38458480	142456780	6637	14788											
LIFR	3977	broad.mit.edu	37	chr5	38481795	38481795	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggaatcaaaaattgtcGggaattaatggagcatggac	13	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38481795	T	T	38481795	2	4	9	1	0	0	0	0	0	0	0	1	8852	1124	39	1		1	LIFR	5	38481795	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23315	38481795	142433465	6638	14789											
LIFR	3977	broad.mit.edu	37	chr5	38481913	38481913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcctgaggtctgtaaccCgcagttttatctaagtcctc	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38481913	A	A	38481913	2	1	9	1	0	0	0	0	0	0	0	1	8852	639	23	1		1	LIFR	5	38481913	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	118	38481913	142433347	6639	14790											
LIFR	3977	broad.mit.edu	37	chr5	38482007	38482007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagcctgcccctcctacaGggtcattttcttgttcttct	6	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38482007	T	T	38482007	3	4	9	1	0	0	0	0	1	0	0	0	8852	1000	35	2	313	2	LIFR	5	38482007	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	94	38482007	142433253	6640	14791											
LIFR	3977	broad.mit.edu	37	chr5	38506054	38506054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattgtgatcgacccagcGgattgtgagcattcaaagta	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38506054	T	T	38506054	3	4	9	1	0	0	0	0	1	0	0	0	8852	1116	39	1	2097	1	LIFR	5	38506054	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24047	38506054	142409206	6641	14792											
LIFR	3977	broad.mit.edu	37	chr5	38523583	38523583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccagataacatttgagcGgtgtggaaaaactgaacccc	9	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38523583	T	T	38523583	3	4	9	1	0	0	0	0	1	0	0	0	8852	1116	39	1	2858	1	LIFR	5	38523583	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17529	38523583	142391677	6642	14793											
OSMR	9180	broad.mit.edu	37	chr5	38921838	38921838	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccatacccaggatgtgctCggtgatttccagtggaagaa	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38921838	A	A	38921838	2	1	9	1	0	0	0	0	0	0	0	1	11386	871	31	3		3	OSMR	5	38921838	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	398255	38921838	141993422	6643	14794											
OSMR	9180	broad.mit.edu	37	chr5	38933248	38933248	+	Missense_Mutation	SNP	C	A	A													tccagtatccccaaaagcccCaagtatgctgggactaatga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38933248	A	A	38933248	3	1	9	1	0	0	0	0	1	0	0	0	11386	594	21	2	2746	2	OSMR	5	38933248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11410	38933248	141982012	6644	14795	94	2									
OSMR	9180	broad.mit.edu	37	chr5	38933258	38933258	+	Silent	SNP	G	T	T													ccaaaagccccaagtatgctGggactaatgacctcacctga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38933258	T	T	38933258	2	4	9	1	0	0	0	0	0	0	0	1	11386	1335	47	2		2	OSMR	5	38933258	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	38933258	141982002	6645	14796	94	2									
RICTOR	253260	broad.mit.edu	37	chr5	38945091	38945091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgcatccagaaatcccCgaaaacttagagggaaccac	7	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38945091	A	A	38945091	2	1	9	1	0	0	0	0	0	0	0	1	13467	639	23	1		1	RICTOR	5	38945091	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11833	38945091	141970169	6646	14797											
RICTOR	253260	broad.mit.edu	37	chr5	38950237	38950237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catctacacctactgtctctCgtgaaggacttgagctcatt	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38950237	A	A	38950237	3	1	9	1	0	0	0	0	1	0	0	0	13467	884	31	3	1445	3	RICTOR	5	38950237	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5146	38950237	141965023	6647	14798											
RICTOR	253260	broad.mit.edu	37	chr5	38950504	38950504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgtacagtggatatgGgtgtaaaatcatcactatga	9	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38950504	T	T	38950504	3	4	9	1	0	0	0	0	1	0	0	0	13467	1232	43	2	1712	2	RICTOR	5	38950504	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	267	38950504	141964756	6648	14799											
RICTOR	253260	broad.mit.edu	37	chr5	38954908	38954908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatggcagcctgttttatGgtgtactagttgtccataaa	9	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38954908	T	T	38954908	3	4	9	1	0	0	0	0	1	0	0	0	13467	1348	47	2	2509	2	RICTOR	5	38954908	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4404	38954908	141960352	6649	14800											
RICTOR	253260	broad.mit.edu	37	chr5	38958579	38958579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacccttgtctccaaggtGggataacgctggtttcatct	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38958579	T	T	38958579	3	4	9	1	0	0	0	0	1	0	0	0	13467	1348	47	2	2800	2	RICTOR	5	38958579	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3671	38958579	141956681	6650	14801											
RICTOR	253260	broad.mit.edu	37	chr5	38960545	38960545	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaactggcaacctacaacCgtgagctgtttggccttggc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38960545	A	A	38960545	2	1	9	1	0	0	0	0	0	0	0	1	13467	639	23	1		1	RICTOR	5	38960545	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1966	38960545	141954715	6651	14802											
RICTOR	253260	broad.mit.edu	37	chr5	38967397	38967397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtctaacataaaaaccCgaattctaataaattgaaac	3	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38967397	A	A	38967397	1	1	9	0	1	0	0	0	0	0	0	0	13467	667	23	1		1	RICTOR	5	38967397	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6852	38967397	141947863	6652	14803											
RICTOR	253260	broad.mit.edu	37	chr5	38982001	38982001	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcagctcgcacatactgtcGagtctttggatgattaagaa	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38982001	T	T	38982001	2	4	9	1	0	0	0	0	0	0	0	1	13467	1066	37	3		3	RICTOR	5	38982001	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14604	38982001	141933259	6653	14804											
RICTOR	253260	broad.mit.edu	37	chr5	38996959	38996959	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcttgtgtcctctctacctCgttgctctgttgtatgtcaa	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38996959	A	A	38996959	4	1	9	1	0	0	0	0	0	1	0	0	13467	893	31	3	4840	3	RICTOR	5	38996959	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14958	38996959	141918301	6654	14805											
RICTOR	253260	broad.mit.edu	37	chr5	39002730	39002730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgctcgtagccctgctgctCgcacttcttttgcttcattt	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39002730	A	A	39002730	3	1	9	1	0	0	0	0	1	0	0	0	13467	884	31	3	4963	3	RICTOR	5	39002730	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5771	39002730	141912530	6655	14806											
RICTOR	253260	broad.mit.edu	37	chr5	39002763	39002763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatttaataaagctaacCgcaaactgtatgaaaacaaa	4	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39002763	A	A	39002763	3	1	9	1	0	0	0	0	1	0	0	0	13467	652	23	1	4996	1	RICTOR	5	39002763	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	39002763	141912497	6656	14807											
FYB	2533	broad.mit.edu	37	chr5	39135011	39135011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgggttgtctgtgatgcGgatgatttcaatttgctctc	11	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39135011	T	T	39135011	3	4	9	1	0	0	0	0	1	0	0	0	6184	1116	39	1	916	1	FYB	5	39135011	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	132248	39135011	141780249	6657	14808											
FYB	2533	broad.mit.edu	37	chr5	39153707	39153707	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctggcctttgctagtacCtaagaagcaaagcaaacaat	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39153707	A	A	39153707	5	1	9	1	0	0	0	0	0	0	1	0	6184	695	24	2	1422	2	FYB	5	39153707	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	18696	39153707	141761553	6658	14809											
FYB	2533	broad.mit.edu	37	chr5	39202016	39202016	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggacccaaggtaaacaaGggaggcaatggcttctgttt	14	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39202016	T	T	39202016	2	4	9	1	0	0	0	0	0	0	0	1	6184	987	35	2		2	FYB	5	39202016	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48309	39202016	141713244	6659	14810											
FYB	2533	broad.mit.edu	37	chr5	39202308	39202308	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggcaaacttgaaatctccCctgcatggtctttattttct	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39202308	G	G	39202308	3	3	9	1	0	0	0	0	1	0	0	0	6184	623	22	4	1806	4	FYB	5	39202308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	292	39202308	141712952	6660	14811											
FYB	2533	broad.mit.edu	37	chr5	39202338	39202338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttattttctgagtcttccCttgctggttttaaagggccg	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39202338	A	A	39202338	3	1	9	1	0	0	0	0	1	0	0	0	6184	681	24	2	1836	2	FYB	5	39202338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	39202338	141712922	6661	14812											
FYB	2533	broad.mit.edu	37	chr5	39202475	39202475	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcttctggccaaaggcGggtttggggaagaggggctt	20	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39202475	T	T	39202475	2	4	9	1	0	0	0	0	0	0	0	1	6184	1103	39	1		1	FYB	5	39202475	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	137	39202475	141712785	6662	14813											
FYB	2533	broad.mit.edu	37	chr5	39202754	39202754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatcccactttcgcctcGgggtctctggtggtcaagct	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39202754	T	T	39202754	2	4	9	1	0	0	0	0	0	0	0	1	6184	1103	39	1		1	FYB	5	39202754	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	279	39202754	141712506	6663	14814											
FYB	2533	broad.mit.edu	37	chr5	39203034	39203034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgagacatcctctgtcGggttgccccccgtgttatat	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39203034	T	T	39203034	3	4	9	1	0	0	0	0	1	0	0	0	6184	1116	39	1	2532	1	FYB	5	39203034	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	280	39203034	141712226	6664	14815											
C9	735	broad.mit.edu	37	chr5	39288924	39288924	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagaatcactgtacctcCattttggcatgtgtggcatt	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39288924	A	A	39288924	4	1	9	1	0	0	0	0	0	1	0	0	2469	603	21	2	141	2	C9	5	39288924	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85890	39288924	141626336	6665	14816											
C9	735	broad.mit.edu	37	chr5	39306791	39306791	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcagtcacatcaatcacGgttcctcggagaagcttttc	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39306791	T	T	39306791	2	4	9	1	0	0	0	0	0	0	0	1	2469	1103	39	1		1	C9	5	39306791	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17867	39306791	141608469	6666	14817											
C9	735	broad.mit.edu	37	chr5	39331813	39331813	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacgttccaaggtcttcGgtagtatgtcagagtgtttc	11	9	2	1	rs146217095		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39331813	T	T	39331813	2	4	9	1	0	0	0	0	0	0	0	1	2469	1124	39	1		1	C9	5	39331813	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25022	39331813	141583447	6667	14818											
C9	735	broad.mit.edu	37	chr5	39331839	39331839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcagagtgtttccatccCgatcccggttacagagtcca	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39331839	A	A	39331839	3	1	9	1	0	0	0	0	1	0	0	0	2469	652	23	1	1153	1	C9	5	39331839	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	39331839	141583421	6668	14819											
C9	735	broad.mit.edu	37	chr5	39331903	39331903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcttaggggatccatccCtaaaatgttgatcctgagaa	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39331903	A	A	39331903	3	1	9	1	0	0	0	0	1	0	0	0	2469	681	24	2	1217	2	C9	5	39331903	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	39331903	141583357	6669	14820											
DAB2	1601	broad.mit.edu	37	chr5	39381674	39381674	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgaaggttctgagacGggaggagcaaagatgtctga	16	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39381674	T	T	39381674	2	4	9	1	0	0	0	0	0	0	0	1	4251	1103	39	1		1	DAB2	5	39381674	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	49771	39381674	141533586	6670	14821											
DAB2	1601	broad.mit.edu	37	chr5	39382899	39382899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggatttgacagagaagcCgttctgttctctttcagata	11	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39382899	A	A	39382899	3	1	9	1	0	0	0	0	1	0	0	0	4251	652	23	1	1170	1	DAB2	5	39382899	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1225	39382899	141532361	6671	14822											
DAB2	1601	broad.mit.edu	37	chr5	39388444	39388444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaggtgtagacatgtccCcaaacaaatccatctggtca	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39388444	A	A	39388444	3	1	9	1	0	0	0	0	1	0	0	0	4251	623	22	2	1686	2	DAB2	5	39388444	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5545	39388444	141526816	6672	14823											
DAB2	1601	broad.mit.edu	37	chr5	39389294	39389294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttaaatacacaaacaaGtatgcctatggttcacaggc	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39389294	T	T	39389294	1	4	9	0	1	0	0	0	0	0	0	0	4251	1044	36	3		3	DAB2	5	39389294	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	850	39389294	141525966	6673	14824											
DAB2	1601	broad.mit.edu	37	chr5	39394381	39394381	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtgcggcctgttggtcGggctgaccattggttgcact	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39394381	T	T	39394381	2	4	9	1	0	0	0	0	0	0	0	1	4251	1103	39	1		1	DAB2	5	39394381	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5087	39394381	141520879	6674	14825											
PTGER4	5734	broad.mit.edu	37	chr5	40681107	40681107	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactatcatgtccactccCggggtcaattcgtccgcctc	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40681107	A	A	40681107	2	1	9	1	0	0	0	0	0	0	0	1	12851	639	23	1		1	PTGER4	5	40681107	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1286726	40681107	140234153	6675	14826											
PTGER4	5734	broad.mit.edu	37	chr5	40681503	40681503	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgtggacaagcgattggcGggcctcacgctctttgcagt	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40681503	T	T	40681503	2	4	9	1	0	0	0	0	0	0	0	1	12851	1103	39	1		1	PTGER4	5	40681503	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	396	40681503	140233757	6676	14827											
PTGER4	5734	broad.mit.edu	37	chr5	40681973	40681973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctcgtggtgagtgaccGgggctggggccctactcggc	17	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40681973	T	T	40681973	1	4	9	0	1	0	0	0	0	0	0	0	12851	1131	39	1		1	PTGER4	5	40681973	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	470	40681973	140233287	6677	14828											
TTC33	23548	broad.mit.edu	37	chr5	40716252	40716252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatgcatactgcttcatcGggctttgataaaaacagagc	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40716252	T	T	40716252	2	4	9	1	0	0	0	0	0	0	0	1	16828	1124	39	1		1	TTC33	5	40716252	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34279	40716252	140199008	6678	14829											
TTC33	23548	broad.mit.edu	37	chr5	40728502	40728502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagtctgccaagactccCatgaatgtggattttgctgg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40728502	A	A	40728502	3	1	9	1	0	0	0	0	1	0	0	0	16828	595	21	2	416	2	TTC33	5	40728502	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12250	40728502	140186758	6679	14830											
TTC33	23548	broad.mit.edu	37	chr5	40730440	40730440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacttctgaattgcctccCgatatctgtggttgttaaag	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40730440	A	A	40730440	3	1	9	1	0	0	0	0	1	0	0	0	16828	652	23	1	573	1	TTC33	5	40730440	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1938	40730440	140184820	6680	14831											
PRKAA1	5562	broad.mit.edu	37	chr5	40763078	40763078	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatagttgctaactgatccCgatctctgtggagtagcagt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40763078	A	A	40763078	2	1	9	1	0	0	0	0	0	0	0	1	12599	639	23	1		1	PRKAA1	5	40763078	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32638	40763078	140152182	6681	14832											
CARD6	84674	broad.mit.edu	37	chr5	40853550	40853550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgccaattcaagagcctGggactcaatgtgagctcagc	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853550	T	T	40853550	3	4	9	1	0	0	0	0	1	0	0	0	2676	1348	47	2	2126	2	CARD6	5	40853550	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90472	40853550	140061710	6682	14833			15	18		8	8	842	N	G_CC_C	8.423588e-07
CARD6	84674	broad.mit.edu	37	chr5	40853599	40853599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaatctctatggtacccCagtattcaggcctgttctag	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40853599	A	A	40853599	3	1	9	1	0	0	0	0	1	0	0	0	2676	594	21	2	2175	2	CARD6	5	40853599	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	40853599	140061661	6683	14834			15	18		8	8	842	N	G_CC_C	8.423588e-07
CARD6	84674	broad.mit.edu	37	chr5	40853649	40853649	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctttccaaccagaattGgaggtaactttaaccatgtt	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853649	T	T	40853649	4	4	9	1	0	0	0	0	0	1	0	0	2676	1349	47	2	2225	2	CARD6	5	40853649	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	40853649	140061611	6684	14835			15	18		8	8	842	N	G_CC_C	8.423588e-07
CARD6	84674	broad.mit.edu	37	chr5	40853765	40853765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagaatgcaggggcccaGggccgaggtaaaagttttgg	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853765	T	T	40853765	3	4	9	1	0	0	0	0	1	0	0	0	2676	991	35	2	2341	2	CARD6	5	40853765	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	116	40853765	140061495	6685	14836			15	18		8	8	842	N	G_CC_C	8.423588e-07
CARD6	84674	broad.mit.edu	37	chr5	40853804	40853805	+	Missense_Mutation	DNP	CC	AA	AA													ggtattcaatccttccatccCcagatattttattcaggtga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	40853805	AA	AA	40853804	3	1	9	1	0	0	0	0	1	0	0	0	2676	610	22	2	2380	2	CARD6	5	40853804	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	39	40853804	140061456	6686	14837			15	18		8	8	842	N	G_CC_C	8.423588e-07
CARD6	84674	broad.mit.edu	37	chr5	40853854	40853854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaattttccagagttgctcGgggatgtcactcgaatggaa	12	7	1	1	rs142385742		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853854	T	T	40853854	3	4	9	1	0	0	0	0	1	0	0	0	2676	1116	39	1	2430	1	CARD6	5	40853854	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	40853854	140061406	6687	14838			15	18		8	8	842	N	G_CC_C	8.423588e-07
CARD6	84674	broad.mit.edu	37	chr5	40853942	40853942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagagaccacaaatgatGggaactcttgaaaggtctag	11	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853942	T	T	40853942	3	4	9	1	0	0	0	0	1	0	0	0	2676	1348	47	2	2518	2	CARD6	5	40853942	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	88	40853942	140061318	6688	14839			15	18		8	8	842	N	G_CC_C	8.423588e-07
CARD6	84674	broad.mit.edu	37	chr5	40854391	40854391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaactaaaccttctcCatgcaaatctactcagccta	2	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40854391	A	A	40854391	3	1	9	1	0	0	0	0	1	0	0	0	2676	594	21	2	2967	2	CARD6	5	40854391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	449	40854391	140060869	6689	14840			15	18		8	8	842	N	G_CC_C	8.423588e-07
C7	730	broad.mit.edu	37	chr5	40934537	40934537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggatgtccaacagaggaGggatgtggagagcgtttcag	17	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40934537	T	T	40934537	3	4	9	1	0	0	0	0	1	0	0	0	2400	991	35	2	263	2	C7	5	40934537	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80146	40934537	139980723	6690	14841											
C7	730	broad.mit.edu	37	chr5	40947863	40947863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagattaatcgaccagtacGggacacattatctgcaatct	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40947863	T	T	40947863	3	4	9	1	0	0	0	0	1	0	0	0	2400	1116	39	1	928	1	C7	5	40947863	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13326	40947863	139967397	6691	14842											
C7	730	broad.mit.edu	37	chr5	40958310	40958310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctgtgccattgcaaacCgtacacatttggtgcggcgt	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40958310	A	A	40958310	3	1	9	1	0	0	0	0	1	0	0	0	2400	652	23	1	1478	1	C7	5	40958310	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10447	40958310	139956950	6692	14843											
C7	730	broad.mit.edu	37	chr5	40964904	40964904	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttgcaatgaaggatactCtcttattggaaacccagtgg	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40964904	A	A	40964904	3	1	9	1	0	0	0	0	1	0	0	0	2400	913	32	3	1865	3	C7	5	40964904	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6594	40964904	139950356	6693	14844											
C7	730	broad.mit.edu	37	chr5	40964919	40964919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactctcttattggaaaccCagtggccagatgtggagaag	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40964919	A	A	40964919	3	1	9	1	0	0	0	0	1	0	0	0	2400	594	21	2	1880	2	C7	5	40964919	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	40964919	139950341	6694	14845											
C7	730	broad.mit.edu	37	chr5	40972681	40972681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgagatgaagaatgccCgctgtgtacaaaaaggtgag	13	7	0	4	rs117487879	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40972681	A	A	40972681	3	1	9	1	0	0	0	0	1	0	0	0	2400	652	23	1	2117	1	C7	5	40972681	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7762	40972681	139942579	6695	14846											
HEATR7B2	133558	broad.mit.edu	37	chr5	40999867	40999867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggatccacagaatttcCtggtttttcttggcctagaa	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40999867	A	A	40999867	3	1	9	1	0	0	0	0	1	0	0	0	7102	680	24	2	272	2	HEATR7B2	5	40999867	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27186	40999867	139915393	6696	14847											
HEATR7B2	133558	broad.mit.edu	37	chr5	41004416	41004416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctgttcactcacttctGgggagggaagttcctaaaca	10	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41004416	T	T	41004416	1	4	9	0	1	0	0	0	0	0	0	0	7102	1363	47	2		2	HEATR7B2	5	41004416	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4549	41004416	139910844	6697	14848											
HEATR7B2	133558	broad.mit.edu	37	chr5	41045898	41045898	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttgctgtttgaaatcctGagtcagctgaatggtccagg	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41045898	T	T	41045898	3	4	9	1	0	0	0	0	1	0	0	0	7102	1299	45	3	3071	3	HEATR7B2	5	41045898	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41482	41045898	139869362	6698	14849											
HEATR7B2	133558	broad.mit.edu	37	chr5	41045992	41045992	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttagatgtgaatatgacCgtttcatgtgctttcttggc	10	6	2	3	rs140737572	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41045992	A	A	41045992	1	1	9	0	1	0	0	0	0	0	0	0	7102	667	23	1		1	HEATR7B2	5	41045992	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	41045992	139869268	6699	14850											
HEATR7B2	133558	broad.mit.edu	37	chr5	41052628	41052628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcaatggccatccttccCgagcttcaatataggacttt	6	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41052628	A	A	41052628	3	1	9	1	0	0	0	0	1	0	0	0	7102	652	23	1	3712	1	HEATR7B2	5	41052628	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6636	41052628	139862632	6700	14851											
HEATR7B2	133558	broad.mit.edu	37	chr5	41058253	41058253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtatccacggaagtcttccCgatgcagcagcaagctcacc	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41058253	A	A	41058253	3	1	9	1	0	0	0	0	1	0	0	0	7102	652	23	1	4233	1	HEATR7B2	5	41058253	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5625	41058253	139857007	6701	14852											
HEATR7B2	133558	broad.mit.edu	37	chr5	41061635	41061635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatttcaaccagcatataGggacatccagcttgaggcat	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41061635	T	T	41061635	1	4	9	0	1	0	0	0	0	0	0	0	7102	1015	35	2		2	HEATR7B2	5	41061635	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3382	41061635	139853625	6702	14853											
HEATR7B2	133558	broad.mit.edu	37	chr5	41061697	41061697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgaggccaaaggggccCacttctccattatataccag	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41061697	A	A	41061697	3	1	9	1	0	0	0	0	1	0	0	0	7102	595	21	2	4315	2	HEATR7B2	5	41061697	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	41061697	139853563	6703	14854											
C6	729	broad.mit.edu	37	chr5	41149262	41149262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatttttgattaaggataGgttatttttaagaaagatga	8	0	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41149262	T	T	41149262	1	4	9	0	1	0	0	0	0	0	0	0	2338	1015	35	2		2	C6	5	41149262	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	87565	41149262	139765998	6704	14855											
C6	729	broad.mit.edu	37	chr5	41149431	41149431	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttgtcctttcaagaccCcattctaactggcggccgtc	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41149431	A	A	41149431	3	1	9	1	0	0	0	0	1	0	0	0	2338	624	22	2	277	2	C6	5	41149431	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	169	41149431	139765829	6705	14856											
C6	729	broad.mit.edu	37	chr5	41159145	41159145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatgttattgagagttaGggcaaaatgacccattcttt	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41159145	T	T	41159145	1	4	9	0	1	0	0	0	0	0	0	0	2338	1015	35	2		2	C6	5	41159145	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9714	41159145	139756115	6706	14857											
C6	729	broad.mit.edu	37	chr5	41159257	41159257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcgtttccctcctcgttGgggggcaggattattgcatt	12	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41159257	T	T	41159257	3	4	9	1	0	0	0	0	1	0	0	0	2338	1357	47	2	1049	2	C6	5	41159257	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	112	41159257	139756003	6707	14858											
C6	729	broad.mit.edu	37	chr5	41160417	41160417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctttcctgaggttgttcCgttttgtcactgcacagggg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41160417	A	A	41160417	3	1	9	1	0	0	0	0	1	0	0	0	2338	652	23	1	1325	1	C6	5	41160417	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1160	41160417	139754843	6708	14859											
C6	729	broad.mit.edu	37	chr5	41203156	41203156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatccttgagtccttccaGgacacaaagaaaagccacaa	6	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41203156	T	T	41203156	1	4	9	0	1	0	0	0	0	0	0	0	2338	1015	35	2		2	C6	5	41203156	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42739	41203156	139712104	6709	14860											
PLCXD3	345557	broad.mit.edu	37	chr5	41381987	41381987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccacagtgctagctttGggggtcagcaccacctgaga	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41381987	T	T	41381987	2	4	9	1	0	0	0	0	0	0	0	1	12138	1335	47	2		2	PLCXD3	5	41381987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	178831	41381987	139533273	6710	14861											
OXCT1	5019	broad.mit.edu	37	chr5	41762154	41762154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgacctggtggtacactGggttttgatgtattgcaaat	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41762154	T	T	41762154	1	4	9	0	1	0	0	0	0	0	0	0	11423	1363	47	2		2	OXCT1	5	41762154	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	380167	41762154	139153106	6711	14862											
OXCT1	5019	broad.mit.edu	37	chr5	41762192	41762192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttccaaaagcagtatttGgggagcacagtacatgttac	9	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41762192	T	T	41762192	1	4	9	0	1	0	0	0	0	0	0	0	11423	1363	47	2		2	OXCT1	5	41762192	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	41762192	139153068	6712	14863											
OXCT1	5019	broad.mit.edu	37	chr5	41794106	41794106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaaaatgtctacttacaGgtatcatccagttagccagg	7	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41794106	T	T	41794106	3	4	9	1	0	0	0	0	1	0	0	0	11423	1014	35	2	335	2	OXCT1	5	41794106	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31914	41794106	139121154	6713	14864											
OXCT1	5019	broad.mit.edu	37	chr5	41807519	41807519	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttctggagcaaatgctcCaatatccacaatttcttcaa	5	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41807519	A	A	41807519	4	1	9	1	0	0	0	0	0	1	0	0	11423	603	21	2	848	2	OXCT1	5	41807519	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13413	41807519	139107741	6714	14865											
OXCT1	5019	broad.mit.edu	37	chr5	41842751	41842751	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttagagttgctgatatgcacGagtgtttttaaaactatcac	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41842751	T	T	41842751	1	4	9	0	1	0	0	0	0	0	0	0	11423	1073	37	3		3	OXCT1	5	41842751	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35232	41842751	139072509	6715	14866											
OXCT1	5019	broad.mit.edu	37	chr5	41850113	41850113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggatcctggtataatctGgttaagagtgtttcttacct	11	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41850113	T	T	41850113	1	4	9	0	1	0	0	0	0	0	0	0	11423	1363	47	2		2	OXCT1	5	41850113	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7362	41850113	139065147	6716	14867											
OXCT1	5019	broad.mit.edu	37	chr5	41862853	41862853	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaggaacaaacacatccCtgaaatattaaaaaaaaaaa	4	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41862853	A	A	41862853	5	1	9	1	0	0	0	0	0	0	1	0	11423	695	24	2	1548	2	OXCT1	5	41862853	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	12740	41862853	139052407	6717	14868											
C5orf51	285636	broad.mit.edu	37	chr5	41912152	41912152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataatactttcaattctttGgctctgacttttatttagta	4	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41912152	T	T	41912152	1	4	9	0	1	0	0	0	0	0	0	0	2331	1363	47	2		2	C5orf51	5	41912152	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49299	41912152	139003108	6718	14869											
FBXO4	26272	broad.mit.edu	37	chr5	41927239	41927239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagatactttttgttgaGggatcttccttcttggtctt	11	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41927239	T	T	41927239	3	4	9	1	0	0	0	0	1	0	0	0	5805	1000	35	2	320	2	FBXO4	5	41927239	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15087	41927239	138988021	6719	14870											
FBXO4	26272	broad.mit.edu	37	chr5	41929884	41929884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttcttttttacactccCtgatcattcagaatgaacca	3	12	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41929884	A	A	41929884	3	1	9	1	0	0	0	0	1	0	0	0	5805	680	24	2	521	2	FBXO4	5	41929884	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2645	41929884	138985376	6720	14871											
FBXO4	26272	broad.mit.edu	37	chr5	41939605	41939605	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatccagcctttgggtctTcgggaagaccattgttggtt	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41939605	C	C	41939605	3	2	9	1	0	0	0	0	1	0	0	0	5805	1783	62	5	1009	5	FBXO4	5	41939605	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	9721	41939605	138975655	6721	14872											
FBXO4	26272	broad.mit.edu	37	chr5	41939711	41939711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaatcttctaaatcaccCatggctggtaagatcattta	6	9	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41939711	A	A	41939711	3	1	9	1	0	0	0	0	1	0	0	0	5805	594	21	2	1115	2	FBXO4	5	41939711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	41939711	138975549	6722	14873											
GHR	2690	broad.mit.edu	37	chr5	42688878	42688878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcattacctcctagacacGgaatacactggcttcatccc	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42688878	T	T	42688878	1	4	9	0	1	0	0	0	0	0	0	0	6435	1131	39	1		1	GHR	5	42688878	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	749167	42688878	138226382	6723	14874											
GHR	2690	broad.mit.edu	37	chr5	42711232	42711232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccattctgaataaaaatGggagaatacctgtagtgttc	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42711232	T	T	42711232	1	4	9	0	1	0	0	0	0	0	0	0	6435	1363	47	2		2	GHR	5	42711232	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22354	42711232	138204028	6724	14875											
GHR	2690	broad.mit.edu	37	chr5	42711356	42711356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtactcattgaaagtGgataaggaatatgaagtgcg	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42711356	T	T	42711356	2	4	9	1	0	0	0	0	0	0	0	1	6435	1335	47	2		2	GHR	5	42711356	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	124	42711356	138203904	6725	14876											
GHR	2690	broad.mit.edu	37	chr5	42718611	42718611	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatgatagctataaaccCgaattccacagtgatgactc	6	10	1	3	rs148387362		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42718611	A	A	42718611	2	1	9	1	0	0	0	0	0	0	0	1	6435	639	23	1		1	GHR	5	42718611	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7255	42718611	138196649	6726	14877											
C5orf39	389289	broad.mit.edu	37	chr5	43039867	43039867	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctgcttctgtgtcccCggccaactgaactcagtggg	11	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43039867	A	A	43039867	2	1	9	1	0	0	0	0	0	0	0	1	2320	639	23	1		1	C5orf39	5	43039867	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	321256	43039867	137875393	6727	14878											
MGC42105	167359	broad.mit.edu	37	chr5	43246004	43246004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgaggagggacagcccCgccagctgacgcccttcgag	16	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43246004	A	A	43246004	3	1	9	1	0	0	0	0	1	0	0	0	9645	652	23	1	129	1	MGC42105	5	43246004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	206137	43246004	137669256	6728	14879											
MGC42105	167359	broad.mit.edu	37	chr5	43277259	43277259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaaagctgcaccatccCaacatcatccgcctttacga	6	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43277259	A	A	43277259	2	1	9	1	0	0	0	0	0	0	0	1	9645	581	21	2		2	MGC42105	5	43277259	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31255	43277259	137638001	6729	14880											
HMGCS1	3157	broad.mit.edu	37	chr5	43291285	43291285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttctgctgctgtggcaGggagtcttggtactttcttg	14	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43291285	T	T	43291285	3	4	9	1	0	0	0	0	1	0	0	0	7299	1000	35	2	55	2	HMGCS1	5	43291285	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14026	43291285	137623975	6730	14881											
HMGCS1	3157	broad.mit.edu	37	chr5	43291309	43291309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttggtactttcttggcaGggcttggaatatgctaaaat	11	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43291309	T	T	43291309	3	4	9	1	0	0	0	0	1	0	0	0	7299	1000	35	2	79	2	HMGCS1	5	43291309	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	43291309	137623951	6731	14882											
HMGCS1	3157	broad.mit.edu	37	chr5	43291367	43291367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcttatgattctttccCccacaagaatcatggcacca	6	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43291367	A	A	43291367	1	1	9	0	1	0	0	0	0	0	0	0	7299	638	22	2		2	HMGCS1	5	43291367	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	43291367	137623893	6732	14883											
CCL28	56477	broad.mit.edu	37	chr5	43382001	43382001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtatgtttcgtgtttcccCtgatgtgccctgttactgtt	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43382001	A	A	43382001	3	1	9	1	0	0	0	0	1	0	0	0	2928	680	24	2	42	2	CCL28	5	43382001	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90634	43382001	137533259	6733	14884											
CCL28	56477	broad.mit.edu	37	chr5	43388434	43388434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcaggtttagacctccCggctgatgagcactcacatg	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43388434	A	A	43388434	1	1	9	0	1	0	0	0	0	0	0	0	2928	667	23	1		1	CCL28	5	43388434	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6433	43388434	137526826	6734	14885											
C5orf34	375444	broad.mit.edu	37	chr5	43487243	43487243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagttaaggaggttttcccCacatttttcactatataaat	5	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43487243	A	A	43487243	1	1	9	0	1	0	0	0	0	0	0	0	2316	609	21	2		2	C5orf34	5	43487243	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	98809	43487243	137428017	6735	14886											
C5orf34	375444	broad.mit.edu	37	chr5	43494656	43494656	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgacagtgaatggacttccCggtctatctggaggaaggtt	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43494656	A	A	43494656	2	1	9	1	0	0	0	0	0	0	0	1	2316	639	23	1		1	C5orf34	5	43494656	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7413	43494656	137420604	6736	14887											
C5orf34	375444	broad.mit.edu	37	chr5	43508755	43508755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtttcgaaaatctagggctCgctgtagttgctcctatgaa	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43508755	A	A	43508755	3	1	9	1	0	0	0	0	1	0	0	0	2316	884	31	3	1751	3	C5orf34	5	43508755	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14099	43508755	137406505	6737	14888											
PAIP1	10605	broad.mit.edu	37	chr5	43539132	43539132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaacttcatattcagtcCgacatctaattaaagacata	3	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43539132	A	A	43539132	3	1	9	1	0	0	0	0	1	0	0	0	11490	652	23	1	727	1	PAIP1	5	43539132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30377	43539132	137376128	6738	14889											
PAIP1	10605	broad.mit.edu	37	chr5	43543161	43543161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctaattgtcagatgatGggacaggtaattacacaggc	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43543161	T	T	43543161	3	4	9	1	0	0	0	0	1	0	0	0	11490	1348	47	2	792	2	PAIP1	5	43543161	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4029	43543161	137372099	6739	14890											
PAIP1	10605	broad.mit.edu	37	chr5	43543189	43543189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattacacaggcgagctccCatataagagaaatttgggat	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43543189	A	A	43543189	3	1	9	1	0	0	0	0	1	0	0	0	11490	594	21	2	820	2	PAIP1	5	43543189	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	43543189	137372071	6740	14891											
NNT	23530	broad.mit.edu	37	chr5	43613070	43613070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatattccaaaatgagaagcGagtggcattgtctcctgctg	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43613070	T	T	43613070	3	4	9	1	0	0	0	0	1	0	0	0	10605	1058	37	3	218	3	NNT	5	43613070	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69881	43613070	137302190	6741	14892											
NNT	23530	broad.mit.edu	37	chr5	43613113	43613113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagaacttggtcaagcaGggttttaatgttgtcgtgga	13	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43613113	T	T	43613113	3	4	9	1	0	0	0	0	1	0	0	0	10605	991	35	2	261	2	NNT	5	43613113	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43	43613113	137302147	6742	14893											
NNT	23530	broad.mit.edu	37	chr5	43613143	43613143	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcgtggaatcgggtgcGggcgaagcttccaagttctc	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43613143	T	T	43613143	2	4	9	1	0	0	0	0	0	0	0	1	10605	1103	39	1		1	NNT	5	43613143	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	43613143	137302117	6743	14894											
NNT	23530	broad.mit.edu	37	chr5	43624119	43624119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagccttaacacataactGggtctgtcttctagattctg	8	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43624119	T	T	43624119	1	4	9	0	1	0	0	0	0	0	0	0	10605	1363	47	2		2	NNT	5	43624119	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10976	43624119	137291141	6744	14895											
NNT	23530	broad.mit.edu	37	chr5	43624193	43624193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcgcagcaaagtcgatGggtgcaattgttcgaggatt	15	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43624193	T	T	43624193	3	4	9	1	0	0	0	0	1	0	0	0	10605	1348	47	2	765	2	NNT	5	43624193	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74	43624193	137291067	6745	14896											
NNT	23530	broad.mit.edu	37	chr5	43624206	43624206	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtcgatgggtgcaattgttCgaggatttgacacaaggtga	14	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43624206	A	A	43624206	2	1	9	1	0	0	0	0	0	0	0	1	10605	876	31	3		3	NNT	5	43624206	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	43624206	137291054	6746	14897											
NNT	23530	broad.mit.edu	37	chr5	43700160	43700160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagatttggaggtgatattGgggtctctgtacattatgtc	13	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43700160	T	T	43700160	1	4	9	0	1	0	0	0	0	0	0	0	10605	1363	47	2		2	NNT	5	43700160	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	75954	43700160	137215100	6747	14898											
FGF10	2255	broad.mit.edu	37	chr5	44388465	44388465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatttgttacttactgtacGggcagttctccttcttggtc	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44388465	T	T	44388465	3	4	9	1	0	0	0	0	1	0	0	0	5896	1116	39	1	318	1	FGF10	5	44388465	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	688305	44388465	136526795	6748	14899											
MRPS30	10884	broad.mit.edu	37	chr5	44813237	44813237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagatccttgctgttacGgtcacacccagtttcatctg	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44813237	T	T	44813237	3	4	9	1	0	0	0	0	1	0	0	0	9934	1116	39	1	897	1	MRPS30	5	44813237	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	424772	44813237	136102023	6749	14900											
HCN1	348980	broad.mit.edu	37	chr5	45262721	45262721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagattgtgtcctcatgcGggaggtcggggtcgtagtag	18	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45262721	T	T	45262721	3	4	9	1	0	0	0	0	1	0	0	0	7062	1116	39	1	701	1	HCN1	5	45262721	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	449484	45262721	135652539	6750	14901											
HCN1	348980	broad.mit.edu	37	chr5	45303767	45303767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatgacaccagcaacacCgtgttgaatgaaatacattt	7	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45303767	A	A	45303767	3	1	9	1	0	0	0	0	1	0	0	0	7062	652	23	1	1132	1	HCN1	5	45303767	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41046	45303767	135611493	6751	14902											
ESM1	11082	broad.mit.edu	37	chr5	54275190	54275190	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaccatttcctcattacGggagacccggcagcattctc	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54275190	T	T	54275190	2	4	9	1	0	0	0	0	0	0	0	1	5294	1103	39	1		1	ESM1	5	54275190	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8971423	54275190	126640070	6752	14903											
DDX4	54514	broad.mit.edu	37	chr5	55110788	55110788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcgctttggaaagtgccCagttcttgttgctacttcag	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55110788	A	A	55110788	3	1	9	1	0	0	0	0	1	0	0	0	4393	594	21	2	1890	2	DDX4	5	55110788	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	835598	55110788	125804472	6753	14904											
ANKRD55	79722	broad.mit.edu	37	chr5	55407426	55407426	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgatgctatcaaaggtGgtgatgatgtcattgacttc	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55407426	T	T	55407426	2	4	9	1	0	0	0	0	0	0	0	1	681	1335	47	2		2	ANKRD55	5	55407426	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	296638	55407426	125507834	6754	14905											
ANKRD55	79722	broad.mit.edu	37	chr5	55466529	55466529	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccacttacctcatatcGggctcagcagtggcagcatg	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55466529	T	T	55466529	2	4	9	1	0	0	0	0	0	0	0	1	681	1103	39	1		1	ANKRD55	5	55466529	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	59103	55466529	125448731	6755	14906											
PDE4D	5144	broad.mit.edu	37	chr5	58273131	58273131	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacagccaaatgatggttctCtaagactgaggaatcattgt	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58273131	A	A	58273131	4	1	9	1	0	0	0	0	0	1	0	0	11736	922	32	3	851	3	PDE4D	5	58273131	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2806602	58273131	122642129	6756	14907											
ERCC8	1161	broad.mit.edu	37	chr5	60199527	60199527	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcacaaagttgtactttGggtcctctagtaccaactgt	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60199527	T	T	60199527	2	4	9	1	0	0	0	0	0	0	0	1	5261	1335	47	2		2	ERCC8	5	60199527	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1926396	60199527	120715733	6757	14908											
DIMT1L	27292	broad.mit.edu	37	chr5	61686731	61686731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatctatgtccatggaacGggcccgtttgtcactaaaac	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61686731	T	T	61686731	3	4	9	1	0	0	0	0	1	0	0	0	4563	1116	39	1	78	1	DIMT1L	5	61686731	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1487204	61686731	119228529	6758	14909											
RNF180	285671	broad.mit.edu	37	chr5	63509461	63509461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaattttgtcagcactcCaaaatgttcctgtggccagc	7	11	1	0	rs148499067		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63509461	A	A	63509461	3	1	9	1	0	0	0	0	1	0	0	0	13575	594	21	2	318	2	RNF180	5	63509461	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1822730	63509461	117405799	6759	14910											
RGS7BP	401190	broad.mit.edu	37	chr5	63894230	63894230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccttttaagcaaactcaGggaaactatgcctttaccat	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63894230	T	T	63894230	3	4	9	1	0	0	0	0	1	0	0	0	13420	1000	35	2	668	2	RGS7BP	5	63894230	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	384769	63894230	117021030	6760	14911											
CWC27	10283	broad.mit.edu	37	chr5	64267655	64267655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaggtaacttcaaaaaccCaaatccatacagaacttatt	3	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64267655	A	A	64267655	1	1	9	0	1	0	0	0	0	0	0	0	4103	609	21	2		2	CWC27	5	64267655	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	373425	64267655	116647605	6761	14912											
CWC27	10283	broad.mit.edu	37	chr5	64313947	64313947	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatttctactgtaagttccCatgcaagaaatcactgaacc	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64313947	A	A	64313947	1	1	9	0	1	0	0	0	0	0	0	0	4103	609	21	2		2	CWC27	5	64313947	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46292	64313947	116601313	6762	14913											
ADAMTS6	11174	broad.mit.edu	37	chr5	64769444	64769444	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggtcactatgaaattcCgatgaagccatgatgaggct	11	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64769444	A	A	64769444	2	1	9	1	0	0	0	0	0	0	0	1	270	639	23	1		1	ADAMTS6	5	64769444	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	455497	64769444	116145816	6763	14914											
PPWD1	23398	broad.mit.edu	37	chr5	64868136	64868136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtaatttaaatttaacCgtactttacttttctaaaaa	3	5	1	0	rs113550012	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64868136	A	A	64868136	1	1	9	0	1	0	0	0	0	0	0	0	12515	667	23	1		1	PPWD1	5	64868136	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	98692	64868136	116047124	6764	14915											
NLN	57486	broad.mit.edu	37	chr5	65081719	65081719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgcaaagagcacaagcCgcgtaacagcctttctaggt	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65081719	A	A	65081719	3	1	9	1	0	0	0	0	1	0	0	0	10562	652	23	1	966	1	NLN	5	65081719	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	213583	65081719	115833541	6765	14916											
NLN	57486	broad.mit.edu	37	chr5	65108105	65108105	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatatgccagctacctttGgacatttggcagggggatac	11	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65108105	T	T	65108105	4	4	9	1	0	0	0	0	0	1	0	0	10562	1349	47	2	1913	2	NLN	5	65108105	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26386	65108105	115807155	6766	14917											
PIK3R1	5295	broad.mit.edu	37	chr5	67569288	67569288	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgcctcttcttatcaagctCgtggaagccattgaaaagaa	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67569288	A	A	67569288	2	1	9	1	0	0	0	0	0	0	0	1	12013	871	31	3		3	PIK3R1	5	67569288	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2461183	67569288	113345972	6767	14918											
SLC30A5	64924	broad.mit.edu	37	chr5	68398995	68398995	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttattcctagcagcttctCgtttagtgggccaggaggca	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68398995	A	A	68398995	1	1	9	0	1	0	0	0	0	0	0	0	14672	899	31	3		3	SLC30A5	5	68398995	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	829707	68398995	112516265	6768	14919											
GTF2H2C	728340	broad.mit.edu	37	chr5	68875650	68875650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacatcatcttagtcctcCtcctgctagctcaagttctg	5	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68875650	A	A	68875650	3	1	9	1	0	0	0	0	1	0	0	0	6927	681	24	2	754	2	GTF2H2C	5	68875650	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	476655	68875650	112039610	6769	14920											
BDP1	55814	broad.mit.edu	37	chr5	70763237	70763237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttgaagaaaatgaccCcatatttgagcgcggttcta	10	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70763237	A	A	70763237	3	1	9	1	0	0	0	0	1	0	0	0	1400	623	22	2	864	2	BDP1	5	70763237	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1887587	70763237	110152023	6770	14921											
BDP1	55814	broad.mit.edu	37	chr5	70763294	70763294	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttaggaaaaactattactCtaaaccatggtcaaataaag	5	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70763294	A	A	70763294	3	1	9	1	0	0	0	0	1	0	0	0	1400	913	32	3	921	3	BDP1	5	70763294	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	70763294	110151966	6771	14922											
BDP1	55814	broad.mit.edu	37	chr5	70819984	70819984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatgctggtgactcttcGggcttcccaggaagaagatg	14	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70819984	T	T	70819984	3	4	9	1	0	0	0	0	1	0	0	0	1400	1116	39	1	5704	1	BDP1	5	70819984	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56690	70819984	110095276	6772	14923											
MCCC2	64087	broad.mit.edu	37	chr5	70927963	70927963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggttaaagcggcaactGgggaagaagtatctgctgag	15	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70927963	T	T	70927963	3	4	9	1	0	0	0	0	1	0	0	0	9468	1348	47	2	784	2	MCCC2	5	70927963	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107979	70927963	109987297	6773	14924											
MAP1B	4131	broad.mit.edu	37	chr5	71482468	71482468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgatcactgatgctgccCgacacaagctgctcgtgctg	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71482468	A	A	71482468	2	1	9	1	0	0	0	0	0	0	0	1	9320	644	23	1		1	MAP1B	5	71482468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	554505	71482468	109432792	6774	14925											
MAP1B	4131	broad.mit.edu	37	chr5	71494435	71494435	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaagaagatactctatcCgatgttgctcctcccagaga	7	13	1	3	rs113052571	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71494435	A	A	71494435	2	1	9	1	0	0	0	0	0	0	0	1	9320	639	23	1		1	MAP1B	5	71494435	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11967	71494435	109420825	6775	14926											
MAP1B	4131	broad.mit.edu	37	chr5	71494450	71494450	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatccgatgttgctcctccCagagatatgtccttatatgc	7	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71494450	A	A	71494450	2	1	9	1	0	0	0	0	0	0	0	1	9320	581	21	2		2	MAP1B	5	71494450	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	71494450	109420810	6776	14927											
UTP15	84135	broad.mit.edu	37	chr5	72868390	72868390	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaaaatcatcacaaaacCgtgacatgtttatgtctaag	6	7	3	2	rs143724010		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72868390	A	A	72868390	2	1	9	1	0	0	0	0	0	0	0	1	17224	639	23	1		1	UTP15	5	72868390	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1373940	72868390	108046870	6777	14928											
RGNEF	64283	broad.mit.edu	37	chr5	73072453	73072453	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaccctgaaccacacagccGagcatttgttggaggcagat	11	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73072453	T	T	73072453	4	4	9	1	0	0	0	0	0	1	0	0	13391	1059	37	3	790	3	RGNEF	5	73072453	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	204063	73072453	107842807	6778	14929											
GFM2	84340	broad.mit.edu	37	chr5	74026139	74026139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgccacctggagaggccCgagataggtctccagtccat	11	12	1	2	rs146794329		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74026139	A	A	74026139	3	1	9	1	0	0	0	0	1	0	0	0	6406	652	23	1	687	1	GFM2	5	74026139	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	953686	74026139	106889121	6779	14930											
NSA2	10412	broad.mit.edu	37	chr5	74065189	74065189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaagaaaagagaaggcGgtaagcaataacaattgaag	11	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74065189	T	T	74065189	2	4	9	1	0	0	0	0	0	0	0	1	10763	1130	39	1		1	NSA2	5	74065189	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39050	74065189	106850071	6780	14931											
FAM169A	26049	broad.mit.edu	37	chr5	74134845	74134845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaatatcatcaatagccCaccactgatcagcaaggtaa	5	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74134845	A	A	74134845	3	1	9	1	0	0	0	0	1	0	0	0	5532	595	21	2	1789	2	FAM169A	5	74134845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69656	74134845	106780415	6781	14932											
GCNT4	51301	broad.mit.edu	37	chr5	74325641	74325641	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctgttcatagataccCgaacagttaacttcatacct	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74325641	A	A	74325641	2	1	9	1	0	0	0	0	0	0	0	1	6365	639	23	1		1	GCNT4	5	74325641	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	190796	74325641	106589619	6782	14933											
SV2C	22987	broad.mit.edu	37	chr5	75427754	75427754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgatgatgactactaccCggctggagaaacctataatg	10	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75427754	A	A	75427754	3	1	9	1	0	0	0	0	1	0	0	0	15537	652	23	1	181	1	SV2C	5	75427754	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1102113	75427754	105487506	6783	14934											
SV2C	22987	broad.mit.edu	37	chr5	75469826	75469826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcattgctgtaaattgctcCgttcctgcagtatccaagat	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75469826	A	A	75469826	1	1	9	0	1	0	0	0	0	0	0	0	15537	667	23	1		1	SV2C	5	75469826	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42072	75469826	105445434	6784	14935											
IQGAP2	10788	broad.mit.edu	37	chr5	75886291	75886291	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaatagcagagcaaacCgttgtaacactaagaaaccc	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75886291	A	A	75886291	2	1	9	1	0	0	0	0	0	0	0	1	7885	639	23	1		1	IQGAP2	5	75886291	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	416465	75886291	105028969	6785	14936											
PDE8B	8622	broad.mit.edu	37	chr5	76709016	76709016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctgaaaccactcttcGggcctggttccaagtgatcg	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76709016	T	T	76709016	3	4	9	1	0	0	0	0	1	0	0	0	11748	1116	39	1	1859	1	PDE8B	5	76709016	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	822725	76709016	104206244	6786	14937											
WDR41	55255	broad.mit.edu	37	chr5	76734015	76734015	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaattacactggtagccctGggaactgtgacttgctttca	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76734015	C	C	76734015	1	2	9	0	1	0	0	0	0	0	0	0	17421	1363	47	4		4	WDR41	5	76734015	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24999	76734015	104181245	6787	14938											
JMY	133746	broad.mit.edu	37	chr5	78610361	78610361	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacctctgaactgcctccCactatatctcttccactttt	3	15	2	1	rs61751239	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78610361	A	A	78610361	2	1	9	1	0	0	0	0	0	0	0	1	8027	581	21	2		2	JMY	5	78610361	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1876346	78610361	102304899	6788	14939											
HOMER1	9456	broad.mit.edu	37	chr5	78734960	78734960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaggagactgaagatcccCgcctgcggattcctttaaaa	9	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78734960	A	A	78734960	3	1	9	1	0	0	0	0	1	0	0	0	7345	652	23	1	684	1	HOMER1	5	78734960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	124599	78734960	102180300	6789	14940											
PAPD4	167153	broad.mit.edu	37	chr5	78936975	78936975	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaatggatttggtaccCggagcagtgatggtgattta	12	5	0	2	rs151126262		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78936975	A	A	78936975	2	1	9	1	0	0	0	0	0	0	0	1	11518	643	23	1		1	PAPD4	5	78936975	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	202015	78936975	101978285	6790	14941											
CMYA5	202333	broad.mit.edu	37	chr5	79029480	79029480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagacaagccacaccaacCgttggaattaccaaatgctg	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79029480	A	A	79029480	3	1	9	1	0	0	0	0	1	0	0	0	3622	652	23	1	4898	1	CMYA5	5	79029480	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92505	79029480	101885780	6791	14942											
THBS4	7060	broad.mit.edu	37	chr5	79351616	79351616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgcttccagccatcctcCgttacctgaagaacgatggg	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79351616	A	A	79351616	3	1	9	1	0	0	0	0	1	0	0	0	15979	652	23	1	311	1	THBS4	5	79351616	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	322136	79351616	101563644	6792	14943											
THBS4	7060	broad.mit.edu	37	chr5	79368128	79368128	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacattctggacaactgccCaaaatttcccaatcgtgacc	5	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79368128	A	A	79368128	3	1	9	1	0	0	0	0	1	0	0	0	15979	594	21	2	1802	2	THBS4	5	79368128	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16512	79368128	101547132	6793	14944											
ANKRD34B	340120	broad.mit.edu	37	chr5	79855439	79855439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactaagaagaactttcaGggtctctgtatcttctgaat	8	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79855439	T	T	79855439	3	4	9	1	0	0	0	0	1	0	0	0	663	991	35	2	1148	2	ANKRD34B	5	79855439	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	487311	79855439	101059821	6794	14945											
MSH3	4437	broad.mit.edu	37	chr5	80150078	80150078	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgaactaggaagagggacGagcactcatgatggaattgc	14	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80150078	T	T	80150078	2	4	9	1	0	0	0	0	0	0	0	1	9965	1045	37	3		3	MSH3	5	80150078	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	294639	80150078	100765182	6795	14946											
ATG10	83734	broad.mit.edu	37	chr5	81305477	81305477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttgccattcctggaccCaaagcactccatgacctcca	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81305477	A	A	81305477	1	1	9	0	1	0	0	0	0	0	0	0	1093	609	21	2		2	ATG10	5	81305477	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1155399	81305477	99609783	6796	14947											
ATG10	83734	broad.mit.edu	37	chr5	81354362	81354362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacactttcaaattaagaatGggtctgtgatgtcacatcta	7	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81354362	T	T	81354362	3	4	9	1	0	0	0	0	1	0	0	0	1093	1348	47	2	163	2	ATG10	5	81354362	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48885	81354362	99560898	6797	14948											
ATG10	83734	broad.mit.edu	37	chr5	81354415	81354415	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggacagacatgtcttccCatggaggtgagtagtttaat	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81354415	A	A	81354415	2	1	9	1	0	0	0	0	0	0	0	1	1093	581	21	2		2	ATG10	5	81354415	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	81354415	99560845	6798	14949											
RPS23	6228	broad.mit.edu	37	chr5	81573495	81573495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataataaactaaaacttgacGggagcaatggacttacactt	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81573495	T	T	81573495	1	4	9	0	1	0	0	0	0	0	0	0	13745	1131	39	1		1	RPS23	5	81573495	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	219080	81573495	99341765	6799	14950											
ATP6AP1L	92270	broad.mit.edu	37	chr5	81608485	81608485	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagttggtttagtttgcgcCgagtcgagatcatttccaac	11	8	1	2	rs138425702	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81608485	A	A	81608485	2	1	9	1	0	0	0	0	0	0	0	1	1170	644	23	1		1	ATP6AP1L	5	81608485	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34990	81608485	99306775	6800	14951											
TMEM167A	153339	broad.mit.edu	37	chr5	82360853	82360853	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatttctgtccaggaggctGggtgccaaggatcgaatata	12	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82360853	C	C	82360853	2	2	9	1	0	0	0	0	0	0	0	1	16204	1335	47	4		4	TMEM167A	5	82360853	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	752368	82360853	98554407	6801	14952											
TMEM167A	153339	broad.mit.edu	37	chr5	82373040	82373040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaggcctctcagctccGggcccacacaccccgggctg	10	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82373040	T	T	82373040	1	4	9	0	1	0	0	0	0	0	0	0	16204	1131	39	1		1	TMEM167A	5	82373040	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12187	82373040	98542220	6802	14953											
XRCC4	7518	broad.mit.edu	37	chr5	82649036	82649036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactctgagaaacagcagccCagaagacctctttgatgaga	9	10	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82649036	A	A	82649036	3	1	9	1	0	0	0	0	1	0	0	0	17582	594	21	2	1012	2	XRCC4	5	82649036	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	275996	82649036	98266224	6803	14954											
HAPLN1	1404	broad.mit.edu	37	chr5	82937632	82937632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggagacagagtcaatGggctggtcttcaattgagcc	13	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82937632	T	T	82937632	1	4	9	0	1	0	0	0	0	0	0	0	7020	1363	47	2		2	HAPLN1	5	82937632	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	288596	82937632	97977628	6804	14955											
EDIL3	10085	broad.mit.edu	37	chr5	83258969	83258969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttaattcaatcaaacttGggtgtaatttgatcctccac	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83258969	T	T	83258969	1	4	9	0	1	0	0	0	0	0	0	0	4955	1363	47	2		2	EDIL3	5	83258969	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	321337	83258969	97656291	6805	14956											
COX7C	1350	broad.mit.edu	37	chr5	85915250	85915250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctgcatttgctacaccCttccttgtagtaagacacca	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85915250	A	A	85915250	2	1	9	1	0	0	0	0	0	0	0	1	3816	668	24	2		2	COX7C	5	85915250	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2656281	85915250	95000010	6806	14957											
CETN3	1070	broad.mit.edu	37	chr5	89689870	89689870	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacattcttagtgtttatcCttgtaattctttaaatgtca	4	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89689870	A	A	89689870	1	1	9	0	1	0	0	0	0	0	0	0	3306	696	24	2		2	CETN3	5	89689870	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3774620	89689870	91225390	6807	14958											
GPR98	84059	broad.mit.edu	37	chr5	90024369	90024369	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtattttcttatttatgaaAgtatctttttaactaaataa	3	3	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90024369	T	T	90024369	1	4	9	0	1	0	0	0	0	0	0	0	6787	87	3	5		5	GPR98	5	90024369	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	334499	90024369	90890891	6808	14959											
GPR98	84059	broad.mit.edu	37	chr5	90074751	90074751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtacaagacgatgagcGggacagcggaagcaggcttg	16	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90074751	T	T	90074751	3	4	9	1	0	0	0	0	1	0	0	0	6787	1116	39	1	13173	1	GPR98	5	90074751	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50382	90074751	90840509	6809	14960											
ARRDC3	57561	broad.mit.edu	37	chr5	90670012	90670012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacttgaggttctgctacCaaatggatgtagaggaatgg	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90670012	A	A	90670012	3	1	9	1	0	0	0	0	1	0	0	0	988	594	21	2	304	2	ARRDC3	5	90670012	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	595261	90670012	90245248	6810	14961											
FAM172A	83989	broad.mit.edu	37	chr5	93410361	93410361	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtatgtacctttcagtgcGgtagtcttttctttttcatc	7	8	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93410361	T	T	93410361	2	4	9	1	0	0	0	0	0	0	0	1	5537	1103	39	1		1	FAM172A	5	93410361	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2740349	93410361	87504899	6811	14962											
FAM81B	153643	broad.mit.edu	37	chr5	94764400	94764400	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattcaagaattcgtgccCgccctggaaactctttccaa	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94764400	A	A	94764400	2	1	9	1	0	0	0	0	0	0	0	1	5682	639	23	1		1	FAM81B	5	94764400	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1354039	94764400	86150860	6812	14963											
RHOBTB3	22836	broad.mit.edu	37	chr5	95087966	95087966	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtattttatgattcaagcCttaaatcagaagacaagtga	8	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95087966	A	A	95087966	2	1	9	1	0	0	0	0	0	0	0	1	13444	668	24	2		2	RHOBTB3	5	95087966	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	323566	95087966	85827294	6813	14964											
ELL2	22936	broad.mit.edu	37	chr5	95234510	95234510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaactctgaatccaaaagcCgtttctaggggagggaaaag	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95234510	A	A	95234510	3	1	9	1	0	0	0	0	1	0	0	0	5105	652	23	1	983	1	ELL2	5	95234510	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146544	95234510	85680750	6814	14965											
PCSK1	5122	broad.mit.edu	37	chr5	95751821	95751821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctgcacatctggtccCgtgtctgaggattgaaaaat	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95751821	A	A	95751821	3	1	9	1	0	0	0	0	1	0	0	0	11694	652	23	1	1672	1	PCSK1	5	95751821	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	517311	95751821	85163439	6815	14966											
ERAP1	51752	broad.mit.edu	37	chr5	96139363	96139363	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggatgatggtgctggtGggctgactggctgtgatttc	17	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96139363	T	T	96139363	2	4	9	1	0	0	0	0	0	0	0	1	5245	1335	47	2		2	ERAP1	5	96139363	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	387542	96139363	84775897	6816	14967											
ERAP2	64167	broad.mit.edu	37	chr5	96228091	96228091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtcactgctttttgacccCaagacctcttctgcttccga	6	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96228091	A	A	96228091	2	1	9	1	0	0	0	0	0	0	0	1	5246	581	21	2		2	ERAP2	5	96228091	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88728	96228091	84687169	6817	14968											
LNPEP	4012	broad.mit.edu	37	chr5	96320692	96320692	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcagatcctttagtaactaGgattgtaacatatttatctt	6	6	1	1	rs138221375	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96320692	C	C	96320692	1	2	9	0	1	0	0	0	0	0	0	0	8938	1015	35	4		4	LNPEP	5	96320692	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	92601	96320692	84594568	6818	14969											
LIX1	167410	broad.mit.edu	37	chr5	96443176	96443176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccactttagctgcatccCgcctggcctcggctctactt	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96443176	A	A	96443176	3	1	9	1	0	0	0	0	1	0	0	0	8905	652	23	1	589	1	LIX1	5	96443176	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122484	96443176	84472084	6819	14970											
RIOK2	55781	broad.mit.edu	37	chr5	96503402	96503402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcagtcatttcaaaactcCgtgcatcagcactctcttct	4	13	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96503402	A	A	96503402	3	1	9	1	0	0	0	0	1	0	0	0	13489	652	23	1	532	1	RIOK2	5	96503402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60226	96503402	84411858	6820	14971											
CHD1	1105	broad.mit.edu	37	chr5	98235304	98235304	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatatgggaccatcctttcCatttaattaaatactgaatc	6	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98235304	A	A	98235304	3	1	9	1	0	0	0	0	1	0	0	0	3354	595	21	2	4283	2	CHD1	5	98235304	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1731902	98235304	82679956	6821	14972											
SLCO4C1	353189	broad.mit.edu	37	chr5	101576466	101576466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattcccaaggctagggacCgttgtctgtgattaacacac	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101576466	A	A	101576466	3	1	9	1	0	0	0	0	1	0	0	0	14844	652	23	1	354	1	SLCO4C1	5	101576466	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3341162	101576466	79338794	6822	14973											
SLCO6A1	133482	broad.mit.edu	37	chr5	101816127	101816127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgctgacatctataagacCaaacaccacacctaaaatgt	4	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101816127	A	A	101816127	3	1	9	1	0	0	0	0	1	0	0	0	14846	594	21	2	1837	2	SLCO6A1	5	101816127	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	239661	101816127	79099133	6823	14974											
PPIP5K2	23262	broad.mit.edu	37	chr5	102472455	102472455	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttccactggacaaagcGgttgcctatgcaaaactcag	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102472455	T	T	102472455	2	4	9	1	0	0	0	0	0	0	0	1	12434	1103	39	1		1	PPIP5K2	5	102472455	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	656328	102472455	78442805	6824	14975											
FER	2241	broad.mit.edu	37	chr5	108516377	108516377	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgtaaaaatgcaaagtgtGgaaatcataaatgtgaaagt	9	2	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108516377	C	C	108516377	1	2	9	0	1	0	0	0	0	0	0	0	5870	1363	47	4		4	FER	5	108516377	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6043922	108516377	72398883	6825	14976											
MAN2A1	4124	broad.mit.edu	37	chr5	109103257	109103257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaacctcggtccggctGggctattgatccctttggac	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109103257	T	T	109103257	3	4	9	1	0	0	0	0	1	0	0	0	9306	1357	47	2	879	2	MAN2A1	5	109103257	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	586880	109103257	71812003	6826	14977											
MAN2A1	4124	broad.mit.edu	37	chr5	109153042	109153042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtctatgtgagttcccCgacagtgcaagtgttctctg	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109153042	A	A	109153042	3	1	9	1	0	0	0	0	1	0	0	0	9306	652	23	1	2062	1	MAN2A1	5	109153042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49785	109153042	71762218	6827	14978											
WDR36	134430	broad.mit.edu	37	chr5	110446828	110446828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgagattttagttcaaGggttttttgtttattaaaac	10	2	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110446828	T	T	110446828	1	4	9	0	1	0	0	0	0	0	0	0	17417	1015	35	2		2	WDR36	5	110446828	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1293786	110446828	70468432	6828	14979											
WDR36	134430	broad.mit.edu	37	chr5	110446902	110446902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgccttggatgacttctcCattagtgttctggacataga	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110446902	A	A	110446902	2	1	9	1	0	0	0	0	0	0	0	1	17417	581	21	2		2	WDR36	5	110446902	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	74	110446902	70468358	6829	14980											
WDR36	134430	broad.mit.edu	37	chr5	110454738	110454738	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgctttttgttggactcGgctcctctcaatgtttctat	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110454738	T	T	110454738	2	4	9	1	0	0	0	0	0	0	0	1	17417	1103	39	1		1	WDR36	5	110454738	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7836	110454738	70460522	6830	14981											
CAMK4	814	broad.mit.edu	37	chr5	110679765	110679765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcaaacagaaggggaccCagaagccttatgctctcaaa	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110679765	A	A	110679765	3	1	9	1	0	0	0	0	1	0	0	0	2631	595	21	2	211	2	CAMK4	5	110679765	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	225027	110679765	70235495	6831	14982											
EPB41L4A	64097	broad.mit.edu	37	chr5	111506680	111506680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttttgcttggatatcGgggcttctcctataaataga	8	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111506680	T	T	111506680	2	4	9	1	0	0	0	0	0	0	0	1	5197	1103	39	1		1	EPB41L4A	5	111506680	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	826915	111506680	69408580	6832	14983											
EPB41L4A	64097	broad.mit.edu	37	chr5	111594984	111594984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtgaacctttgtaatcCgaggcctaaaaaacaaagca	8	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111594984	A	A	111594984	3	1	9	1	0	0	0	0	1	0	0	0	5197	652	23	1	1383	1	EPB41L4A	5	111594984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88304	111594984	69320276	6833	14984											
SRP19	6728	broad.mit.edu	37	chr5	112227818	112227818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaccacatggcaaaaccCagaaccacccgtggatttca	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112227818	A	A	112227818	3	1	9	1	0	0	0	0	1	0	0	0	15272	609	21	2		2	SRP19	5	112227818	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	632834	112227818	68687442	6834	14985											
YTHDC2	64848	broad.mit.edu	37	chr5	112899713	112899713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcttgcacactagcttatcGagatccttttgtactaccta	6	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112899713	T	T	112899713	3	4	9	1	0	0	0	0	1	0	0	0	17624	1058	37	3	2678	3	YTHDC2	5	112899713	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	671895	112899713	68015547	6835	14986											
TRIM36	55521	broad.mit.edu	37	chr5	114499299	114499299	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgattggagttgtctgatcCcacatcgttgaatgaatcat	9	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114499299	G	G	114499299	3	3	9	1	0	0	0	0	1	0	0	0	16634	632	22	4	2008	4	TRIM36	5	114499299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1599586	114499299	66415961	6836	14987											
DTWD2	285605	broad.mit.edu	37	chr5	118264246	118264246	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttacctgtttgggatgtcGgaacaaggagttcttataga	12	5	1	1	rs151134567	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118264246	T	T	118264246	2	4	9	1	0	0	0	0	0	0	0	1	4832	1124	39	1		1	DTWD2	5	118264246	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3764947	118264246	62651014	6837	14988											
DMXL1	1657	broad.mit.edu	37	chr5	118454566	118454566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agataatgtgtgtcgtctttGggtagagacatttttaccaa	10	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118454566	T	T	118454566	3	4	9	1	0	0	0	0	1	0	0	0	4634	1357	47	2	830	2	DMXL1	5	118454566	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	190320	118454566	62460694	6838	14989											
ZNF474	133923	broad.mit.edu	37	chr5	121487919	121487919	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtagaagaattatatcGgaaagccagcttagcccccc	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121487919	T	T	121487919	2	4	9	1	0	0	0	0	0	0	0	1	18059	1103	39	1		1	ZNF474	5	121487919	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3033353	121487919	59427341	6839	14990											
ZNF474	133923	broad.mit.edu	37	chr5	121488516	121488516	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgcacagtccagccaagcGggaccaaatcaagctcagct	9	13	2	0	rs114250323	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121488516	T	T	121488516	2	4	9	1	0	0	0	0	0	0	0	1	18059	1103	39	1		1	ZNF474	5	121488516	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	597	121488516	59426744	6840	14991											
SNX24	28966	broad.mit.edu	37	chr5	122343390	122343390	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagattttccaaatgtGgttattgaaggagtcctcca	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122343390	T	T	122343390	2	4	9	1	0	0	0	0	0	0	0	1	15009	1335	47	2		2	SNX24	5	122343390	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	854874	122343390	58571870	6841	14992											
ZNF608	57507	broad.mit.edu	37	chr5	123983568	123983568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggagtcctctagtttccCcagcttggcatccatttttg	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123983568	A	A	123983568	3	1	9	1	0	0	0	0	1	0	0	0	18161	623	22	2	2053	2	ZNF608	5	123983568	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1640178	123983568	56931692	6842	14993											
MEGF10	84466	broad.mit.edu	37	chr5	126754911	126754911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctgctctcctgtggacGggtcttgtacttgcaaggca	12	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126754911	T	T	126754911	3	4	9	1	0	0	0	0	1	0	0	0	9553	1116	39	1	1443	1	MEGF10	5	126754911	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2771343	126754911	54160349	6843	14994											
MEGF10	84466	broad.mit.edu	37	chr5	126791189	126791189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacccacctgtacttatccCgaaaagctcagagtgtggtt	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126791189	A	A	126791189	3	1	9	1	0	0	0	0	1	0	0	0	9553	652	23	1	3212	1	MEGF10	5	126791189	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36278	126791189	54124071	6844	14995											
SLC12A2	6558	broad.mit.edu	37	chr5	127469905	127469905	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgatatccgaattattGgagccattacagtcgtgatt	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127469905	T	T	127469905	4	4	9	1	0	0	0	0	0	1	0	0	14496	1349	47	2	1259	2	SLC12A2	5	127469905	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	678716	127469905	53445355	6845	14996											
SLC12A2	6558	broad.mit.edu	37	chr5	127507381	127507381	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcttttgacatacaatatGgagtagtggttattcgccta	9	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127507381	T	T	127507381	4	4	9	1	0	0	0	0	0	1	0	0	14496	1349	47	2	2820	2	SLC12A2	5	127507381	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37476	127507381	53407879	6846	14997											
FBN2	2201	broad.mit.edu	37	chr5	127595027	127595027	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattcaaagtctaagacaGggaggaaagaaacaagagtt	10	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127595027	T	T	127595027	1	4	9	0	1	0	0	0	0	0	0	0	5760	1015	35	2		2	FBN2	5	127595027	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	87646	127595027	53320233	6847	14998											
FBN2	2201	broad.mit.edu	37	chr5	127595291	127595291	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttccagtgtgtatgtgccGggcatgagcttcttcttggc	12	9	2	1	rs137914321		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127595291	T	T	127595291	2	4	9	1	0	0	0	0	0	0	0	1	5760	1103	39	1		1	FBN2	5	127595291	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	264	127595291	53319969	6848	14999											
FBN2	2201	broad.mit.edu	37	chr5	127597502	127597502	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atagccgttgattttgcactCgtagcatgcttctggggaca	11	9	1	1	rs139702446	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127597502	A	A	127597502	4	1	9	1	0	0	0	0	0	1	0	0	5760	893	31	3	456	3	FBN2	5	127597502	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2211	127597502	53317758	6849	15000											
FBN2	2201	broad.mit.edu	37	chr5	127645125	127645125	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacaaagaaactagccatttGtatccacgagtagtttataa	6	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127645125	C	C	127645125	1	2	9	0	1	0	0	0	0	0	0	0	5760	1392	48	4		4	FBN2	5	127645125	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47623	127645125	53270135	6850	15001											
FBN2	2201	broad.mit.edu	37	chr5	127681106	127681106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagcaaagccagccccgcGggggcacagcgtctcgtatt	13	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127681106	T	T	127681106	3	4	9	1	0	0	0	0	1	0	0	0	5760	1116	39	1	5746	1	FBN2	5	127681106	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35981	127681106	53234154	6851	15002											
CDC42SE2	56990	broad.mit.edu	37	chr5	130695135	130695135	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtatttttggaacttccCgagttgagatttggaacctt	10	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130695135	A	A	130695135	1	1	9	0	1	0	0	0	0	0	0	0	3110	667	23	1		1	CDC42SE2	5	130695135	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3014029	130695135	50220125	6852	15003											
RAPGEF6	51735	broad.mit.edu	37	chr5	130766863	130766863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagagttcaaaaaatccCagctttttgggtttggaagg	11	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130766863	A	A	130766863	3	1	9	1	0	0	0	0	1	0	0	0	13156	595	21	2	663	2	RAPGEF6	5	130766863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71728	130766863	50148397	6853	15004											
RAPGEF6	51735	broad.mit.edu	37	chr5	130815193	130815193	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattcctgcatagctaagatCggcattacctacctaaatag	6	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130815193	T	T	130815193	1	4	9	0	1	0	0	0	0	0	0	0	13156	899	31	4		4	RAPGEF6	5	130815193	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	48330	130815193	50100067	6854	15005											
FNIP1	96459	broad.mit.edu	37	chr5	131054712	131054712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaatactgctgccagtcCgagcagtaaacactttgctg	8	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131054712	A	A	131054712	3	1	9	1	0	0	0	0	1	0	0	0	6033	652	23	1	3059	1	FNIP1	5	131054712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	239519	131054712	49860548	6855	15006											
FNIP1	96459	broad.mit.edu	37	chr5	131055103	131055103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattggcatcagaagagcacCgagaaccctaaacaataacc	7	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131055103	A	A	131055103	3	1	9	1	0	0	0	0	1	0	0	0	6033	652	23	1	3198	1	FNIP1	5	131055103	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	391	131055103	49860157	6856	15007											
ACSL6	23305	broad.mit.edu	37	chr5	131323773	131323773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggacttaatgaccacccCgcacttctgccctctctctt	5	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131323773	A	A	131323773	3	1	9	1	0	0	0	0	1	0	0	0	181	652	23	1	1511	1	ACSL6	5	131323773	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	268670	131323773	49591487	6857	15008											
C5orf56	441108	broad.mit.edu	37	chr5	131796254	131796254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttccattctctcaaccagGgaatcttcaaactcttcttc	3	15	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131796254	T	T	131796254	3	4	9	1	0	0	0	0	1	0	0	0	2335	1246	43	2	99	2	C5orf56	5	131796254	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	472481	131796254	49119006	6858	15009											
C5orf56	441108	broad.mit.edu	37	chr5	131796342	131796342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgccatcctgccttcccCgtggagtacagccatgctgt	9	16	0	0	rs140600303		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131796342	A	A	131796342	2	1	9	1	0	0	0	0	0	0	0	1	2335	639	23	1		1	C5orf56	5	131796342	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	131796342	49118918	6859	15010											
KIF3A	11127	broad.mit.edu	37	chr5	132037834	132037834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctgaagtcgaagctccCggctaagttgccgaatgttc	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132037834	A	A	132037834	3	1	9	1	0	0	0	0	1	0	0	0	8370	652	23	1	371	1	KIF3A	5	132037834	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	241492	132037834	48877426	6860	15011											
HSPA4	3308	broad.mit.edu	37	chr5	132424230	132424230	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgctgatgaagctgtcactCgaggctgtgcattgcaggtg	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132424230	A	A	132424230	2	1	9	1	0	0	0	0	0	0	0	1	7481	876	31	3		3	HSPA4	5	132424230	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	386396	132424230	48491030	6861	15012											
SEC24A	10802	broad.mit.edu	37	chr5	133997030	133997030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatagtggtcctgctcccCgaatgccattacctgcttct	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133997030	A	A	133997030	2	1	9	1	0	0	0	0	0	0	0	1	14107	644	23	1		1	SEC24A	5	133997030	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1572800	133997030	46918230	6862	15013											
SEC24A	10802	broad.mit.edu	37	chr5	134010838	134010838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaaagaaacatgcttcCgtcaacacctttgaagcctc	6	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134010838	A	A	134010838	3	1	9	1	0	0	0	0	1	0	0	0	14107	652	23	1	1104	1	SEC24A	5	134010838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13808	134010838	46904422	6863	15014											
SEC24A	10802	broad.mit.edu	37	chr5	134044442	134044442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagtctgagtgacgctcGggatgctctagtgaatgcag	14	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134044442	T	T	134044442	3	4	9	1	0	0	0	0	1	0	0	0	14107	1116	39	1	2661	1	SEC24A	5	134044442	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33604	134044442	46870818	6864	15015											
TXNDC15	79770	broad.mit.edu	37	chr5	134229243	134229243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagtcctgttttacacccCgtggtgccgcttttctgcca	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134229243	A	A	134229243	3	1	9	1	0	0	0	0	1	0	0	0	16920	652	23	1	663	1	TXNDC15	5	134229243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	184801	134229243	46686017	6865	15016											
CATSPER3	347732	broad.mit.edu	37	chr5	134303734	134303734	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcatttctagttcaccagTtgacactacatcggtgggat	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134303734	C	C	134303734	3	2	9	1	0	0	0	0	1	0	0	0	2715	1725	60	5	55	5	CATSPER3	5	134303734	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	74491	134303734	46611526	6866	15017											
SMAD5	4090	broad.mit.edu	37	chr5	135496716	135496716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttatctccaaacagccCttatcccccttctcctgcta	2	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135496716	A	A	135496716	3	1	9	1	0	0	0	0	1	0	0	0	14875	681	24	2	581	2	SMAD5	5	135496716	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1192982	135496716	45418544	6867	15018											
SMAD5	4090	broad.mit.edu	37	chr5	135496750	135496750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctagcagcacatatccCaactccccagcaagttctgg	7	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135496750	A	A	135496750	2	1	9	1	0	0	0	0	0	0	0	1	14875	581	21	2		2	SMAD5	5	135496750	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	135496750	45418510	6868	15019											
MYOT	9499	broad.mit.edu	37	chr5	137206473	137206473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccattatcatccagcccCgccagtgtacagagcaaaga	7	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137206473	A	A	137206473	3	1	9	1	0	0	0	0	1	0	0	0	10188	652	23	1	135	1	MYOT	5	137206473	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1709723	137206473	43708787	6869	15020											
FAM13B	51306	broad.mit.edu	37	chr5	137284709	137284709	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttaagaataagttcaaGggttgcttctttagatggtt	9	4	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137284709	T	T	137284709	3	4	9	1	0	0	0	0	1	0	0	0	5499	1000	35	2	746	2	FAM13B	5	137284709	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78236	137284709	43630551	6870	15021											
WNT8A	7478	broad.mit.edu	37	chr5	137427062	137427062	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagggagagtttggtttGgggtctatatctagagggac	15	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137427062	T	T	137427062	1	4	9	0	1	0	0	0	0	0	0	0	17523	1363	47	2		2	WNT8A	5	137427062	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	142353	137427062	43488198	6871	15022											
CDC25C	995	broad.mit.edu	37	chr5	137664148	137664148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaaaaggcttttgtgtgGggttcatttaacaacagaac	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137664148	T	T	137664148	1	4	9	0	1	0	0	0	0	0	0	0	3094	1247	43	2		2	CDC25C	5	137664148	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	237086	137664148	43251112	6872	15023											
FAM53C	51307	broad.mit.edu	37	chr5	137681054	137681054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtccttgtcaccttgccCacctcagcgccgcttctccc	7	19	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137681054	A	A	137681054	3	1	9	1	0	0	0	0	1	0	0	0	5632	594	21	2	687	2	FAM53C	5	137681054	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16906	137681054	43234206	6873	15024											
KDM3B	51780	broad.mit.edu	37	chr5	137735578	137735578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggaagcgagctgtgcgtGgtgtacgggagatgtgtgat	18	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137735578	T	T	137735578	3	4	9	1	0	0	0	0	1	0	0	0	8197	1348	47	2	3118	2	KDM3B	5	137735578	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54524	137735578	43179682	6874	15025											
HSPA9	3313	broad.mit.edu	37	chr5	137895664	137895664	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcaaggagcagcacatcCgtgacatcgccggccaacac	9	15	1	1	rs61755727		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137895664	A	A	137895664	2	1	9	1	0	0	0	0	0	0	0	1	7486	639	23	1		1	HSPA9	5	137895664	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	160086	137895664	43019596	6875	15026											
CTNNA1	1495	broad.mit.edu	37	chr5	138266342	138266342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagatgacagactttaccCggtgagcagcaccccggccc	12	14	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138266342	A	A	138266342	2	1	9	1	0	0	0	0	0	0	0	1	4046	666	23	1		1	CTNNA1	5	138266342	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	370678	138266342	42648918	6876	15027											
MATR3	9782	broad.mit.edu	37	chr5	138644019	138644019	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagttcattctaataaggtGagttaactcaacagatgctt	7	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138644019	T	T	138644019	1	4	9	0	1	0	0	0	0	0	0	0	9429	1305	45	3		3	MATR3	5	138644019	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	377677	138644019	42271241	6877	15028											
MATR3	9782	broad.mit.edu	37	chr5	138658545	138658545	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcagtgggagacgagacCgatcttgctaatttaggtga	13	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138658545	A	A	138658545	2	1	9	1	0	0	0	0	0	0	0	1	9429	639	23	1		1	MATR3	5	138658545	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14526	138658545	42256715	6878	15029											
TMEM173	340061	broad.mit.edu	37	chr5	138858042	138858042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctggctcactgcacccCgtagcaggttgttgtaatgc	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138858042	A	A	138858042	3	1	9	1	0	0	0	0	1	0	0	0	16212	652	23	1	579	1	TMEM173	5	138858042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	199497	138858042	42057218	6879	15030											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139909238	139909238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatggtccactgtcctcacGagttgctacagatgcctctt	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139909238	T	T	139909238	3	4	9	1	0	0	0	0	1	0	0	0	629	1058	37	3	6821	3	ANKHD1-EIF4EBP3	5	139909238	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1051196	139909238	41006022	6880	15031											
TMCO6	55374	broad.mit.edu	37	chr5	140021652	140021652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatagtaagccctgtccCttcctatcttgttcttggtt	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140021652	A	A	140021652	1	1	9	0	1	0	0	0	0	0	0	0	16123	696	24	2		2	TMCO6	5	140021652	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	112414	140021652	40893608	6881	15032											
HARS2	23438	broad.mit.edu	37	chr5	140075203	140075203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtccaaggccgttatagGgagttctgccagtgtgtaag	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140075203	T	T	140075203	3	4	9	1	0	0	0	0	1	0	0	0	7026	1223	43	2	528	2	HARS2	5	140075203	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53551	140075203	40840057	6882	15033											
ZMAT2	153527	broad.mit.edu	37	chr5	140081809	140081809	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggaaggtccttggcccCaggattacgtccttcttgcc	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140081809	A	A	140081809	1	1	9	0	1	0	0	0	0	0	0	0	17818	609	21	2		2	ZMAT2	5	140081809	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6606	140081809	40833451	6883	15034											
PCDHA1	56147	broad.mit.edu	37	chr5	140166268	140166268	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattaacgataatccaccCgtcttcaggggcagagaaca	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140166268	A	A	140166268	2	1	9	1	0	0	0	0	0	0	0	1	11613	639	23	1		1	PCDHA1	5	140166268	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84459	140166268	40748992	6884	15035											
PCDHA6	56142	broad.mit.edu	37	chr5	140209560	140209560	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgcgtggggctgtacacGggcgagatcagcaccactcg	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140209560	T	T	140209560	2	4	9	1	0	0	0	0	0	0	0	1	11622	1103	39	1		1	PCDHA6	5	140209560	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43292	140209560	40705700	6885	15036											
PCDHA7	56141	broad.mit.edu	37	chr5	140215326	140215326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacgtgaacgacaacgcccCggcgttcgcgcagcccgagt	13	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215326	A	A	140215326	3	1	9	1	0	0	0	0	1	0	0	0	11623	652	23	1	1360	1	PCDHA7	5	140215326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5766	140215326	40699934	6886	15037											
PCDHA9	9752	broad.mit.edu	37	chr5	140229227	140229227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctagacgcagatgccaacGggcaggttacctgctccctg	11	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140229227	T	T	140229227	3	4	9	1	0	0	0	0	1	0	0	0	11625	1116	39	1	1149	1	PCDHA9	5	140229227	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13901	140229227	40686033	6887	15038											
PCDHA9	9752	broad.mit.edu	37	chr5	140230545	140230545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattatcgattactcccagGggccgttcaaatagttttat	7	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140230545	T	T	140230545	1	4	9	0	1	0	0	0	0	0	0	0	11625	1232	43	2		2	PCDHA9	5	140230545	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1318	140230545	40684715	6888	15039											
PCDHA10	56139	broad.mit.edu	37	chr5	140235844	140235844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtccaaaagacacGgggaccttctggaggtaaat	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140235844	T	T	140235844	3	4	9	1	0	0	0	0	1	0	0	0	11614	1116	39	1	213	1	PCDHA10	5	140235844	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5299	140235844	40679416	6889	15040											
PCDHA11	56138	broad.mit.edu	37	chr5	140249077	140249077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggacattaacgacaaccCgccggtgttctcgctcagag	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140249077	A	A	140249077	3	1	9	1	0	0	0	0	1	0	0	0	11615	652	23	1	391	1	PCDHA11	5	140249077	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13233	140249077	40666183	6890	15041											
PCDHA11	56138	broad.mit.edu	37	chr5	140250068	140250068	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcacagcccgagtacacCgtgttcgtgaaggagaacaa	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140250068	A	A	140250068	2	1	9	1	0	0	0	0	0	0	0	1	11615	639	23	1		1	PCDHA11	5	140250068	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	991	140250068	40665192	6891	15042											
PCDHA12	56137	broad.mit.edu	37	chr5	140255858	140255858	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatccaactaaatgcttcCgatccagacgaaggacttaa	8	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140255858	A	A	140255858	2	1	9	1	0	0	0	0	0	0	0	1	11616	639	23	1		1	PCDHA12	5	140255858	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5790	140255858	40659402	6892	15043											
PCDHA13	56136	broad.mit.edu	37	chr5	140261961	140261961	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctccactactccgtcccCgaggaagcaaaacacggcac	8	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140261961	A	A	140261961	2	1	9	1	0	0	0	0	0	0	0	1	11617	639	23	1		1	PCDHA13	5	140261961	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6103	140261961	40653299	6893	15044											
PCDHA13	56136	broad.mit.edu	37	chr5	140264096	140264096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcgcggcagggagttGgtcgtactcgcagcagaggc	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140264096	T	T	140264096	3	4	9	1	0	0	0	0	1	0	0	0	11617	1357	47	2	2245	2	PCDHA13	5	140264096	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2135	140264096	40651164	6894	15045											
PCDHAC1	56135	broad.mit.edu	37	chr5	140307446	140307446	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttggtttagctagcacCgctaaactgctggtggaggt	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140307446	A	A	140307446	2	1	9	1	0	0	0	0	0	0	0	1	11626	639	23	1		1	PCDHAC1	5	140307446	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43350	140307446	40607814	6895	15046											
PCDHB5	26167	broad.mit.edu	37	chr5	140515006	140515006	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaactgcgccttctggaccGggtctgaacaatggagactg	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140515006	C	C	140515006	1	2	9	0	1	0	0	0	0	0	0	0	11639	1131	39	4		4	PCDHB5	5	140515006	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	207560	140515006	40400254	6896	15047											
PCDHB5	26167	broad.mit.edu	37	chr5	140516259	140516259	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacagagagagccaagccGagtacaacatcaccatcact	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140516259	T	T	140516259	4	4	9	1	0	0	0	0	0	1	0	0	11639	1059	37	3	1245	3	PCDHB5	5	140516259	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1253	140516259	40399001	6897	15048											
PCDHB8	56128	broad.mit.edu	37	chr5	140559234	140559234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcagaccgcggctcccCggctttgagcagcgaggcgc	14	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559234	A	A	140559234	3	1	9	1	0	0	0	0	1	0	0	0	11642	652	23	1	1621	1	PCDHB8	5	140559234	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42975	140559234	40356026	6898	15049											
PCDHB9	56127	broad.mit.edu	37	chr5	140568273	140568273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctacaccctgttcgtccGggagaacaacagccccgccc	8	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140568273	T	T	140568273	3	4	9	1	0	0	0	0	1	0	0	0	11643	1116	39	1	1383	1	PCDHB9	5	140568273	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9039	140568273	40346987	6899	15050											
PCDHB9	56127	broad.mit.edu	37	chr5	140568289	140568289	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccgggagaacaacagcccCgccctgcacatcggcagtgt	12	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140568289	A	A	140568289	2	1	9	1	0	0	0	0	0	0	0	1	11643	652	23	1		1	PCDHB9	5	140568289	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	140568289	40346971	6900	15051											
PCDHB10	56126	broad.mit.edu	37	chr5	140572210	140572210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtccttggcaggttctGggtttggacgttattcggtg	16	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140572210	T	T	140572210	3	4	9	1	0	0	0	0	1	0	0	0	11629	1348	47	2	87	2	PCDHB10	5	140572210	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3921	140572210	40343050	6901	15052											
PCDHB11	56125	broad.mit.edu	37	chr5	140580822	140580822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaactactcgctactccCgccccaggacctgcacctgc	8	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140580822	A	A	140580822	3	1	9	1	0	0	0	0	1	0	0	0	11630	652	23	1	1477	1	PCDHB11	5	140580822	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8612	140580822	40334438	6902	15053											
PCDHB15	56121	broad.mit.edu	37	chr5	140626119	140626119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatagaggcatctgatggcGggggactttctggaaaatgc	14	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140626119	T	T	140626119	3	4	9	1	0	0	0	0	1	0	0	0	11634	1116	39	1	975	1	PCDHB15	5	140626119	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45297	140626119	40289141	6903	15054											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711855	140711855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactgaaagtgatggcgcGggacagtggggatccgcccc	16	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140711855	T	T	140711855	3	4	9	1	0	0	0	0	1	0	0	0	11644	1116	39	1	1606	1	PCDHGA1	5	140711855	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85736	140711855	40203405	6904	15055											
PCDHGB2	56103	broad.mit.edu	37	chr5	140739991	140739991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccgagaacagatatgcGggaagcagcctctgtgtgtt	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140739991	T	T	140739991	3	4	9	1	0	0	0	0	1	0	0	0	11657	1116	39	1	291	1	PCDHGB2	5	140739991	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28136	140739991	40175269	6905	15056											
PCDHGA5	56110	broad.mit.edu	37	chr5	140745186	140745186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcatggaccatggaacccCgcccctctctacagaaagcc	8	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140745186	A	A	140745186	3	1	9	1	0	0	0	0	1	0	0	0	11651	652	23	1	1291	1	PCDHGA5	5	140745186	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5195	140745186	40170074	6906	15057											
PCDHGA5	56110	broad.mit.edu	37	chr5	140745948	140745948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcaagacccccattgaccCtgaggatctggacctcacac	7	15	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140745948	A	A	140745948	3	1	9	1	0	0	0	0	1	0	0	0	11651	681	24	2	2053	2	PCDHGA5	5	140745948	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	762	140745948	40169312	6907	15058											
PCDHGB3	56102	broad.mit.edu	37	chr5	140751311	140751311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcaacgacaacgttccCgttttccaccaggcctccta	7	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140751311	A	A	140751311	2	1	9	1	0	0	0	0	0	0	0	1	11658	639	23	1		1	PCDHGB3	5	140751311	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5363	140751311	40163949	6908	15059											
PCDHGA6	56109	broad.mit.edu	37	chr5	140755330	140755330	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagaatgacaatgcgccCgagatcctgtaccccgccct	9	16	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140755330	A	A	140755330	2	1	9	1	0	0	0	0	0	0	0	1	11652	639	23	1		1	PCDHGA6	5	140755330	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4019	140755330	40159930	6909	15060											
PCDHGB4	8641	broad.mit.edu	37	chr5	140769756	140769756	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaatttcctaaaatgtagtGagcagttgagttcaggacaa	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140769756	T	T	140769756	4	4	9	1	0	0	0	0	0	1	0	0	11659	1291	45	3	2307	3	PCDHGB4	5	140769756	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14426	140769756	40145504	6910	15061											
PCDHGB5	56101	broad.mit.edu	37	chr5	140779764	140779764	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagttttacctagtggtGgccttggccttgatctcagt	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140779764	T	T	140779764	2	4	9	1	0	0	0	0	0	0	0	1	11660	1335	47	2		2	PCDHGB5	5	140779764	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10008	140779764	40135496	6911	15062											
PCDHGA2	56113	broad.mit.edu	37	chr5	140780154	140780154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttctgtatttacatgaaaCtatcgtacattttcaagtcc	4	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140780154	T	T	140780154	1	4	9	0	1	0	0	0	0	0	0	0	11648	580	20	4		4	PCDHGA2	5	140780154	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	390	140780154	40135106	6912	15063											
PCDHGA10	56106	broad.mit.edu	37	chr5	140794435	140794435	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagaacgacaatgcgcccGagatcctgtaccccgccctc	8	18	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140794435	T	T	140794435	4	4	9	1	0	0	0	0	0	1	0	0	11645	1059	37	3	1695	3	PCDHGA10	5	140794435	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14281	140794435	40120825	6913	15064											
PCDHGA12	26025	broad.mit.edu	37	chr5	140810562	140810562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcttttcgccctgaatcCgcgcagcggcagcttggtca	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140810562	A	A	140810562	3	1	9	1	0	0	0	0	1	0	0	0	11647	652	23	1	238	1	PCDHGA12	5	140810562	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16127	140810562	40104698	6914	15065											
PCDHGA12	26025	broad.mit.edu	37	chr5	140812021	140812021	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcccgagatcctgtacccCgccctccccacggacggttc	10	20	0	1	rs144987321		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140812021	A	A	140812021	2	1	9	1	0	0	0	0	0	0	0	1	11647	639	23	1		1	PCDHGA12	5	140812021	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1459	140812021	40103239	6915	15066											
PCDHGA12	26025	broad.mit.edu	37	chr5	140812291	140812291	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggccagccccctctctcCgccactgtcacgctcaccgt	7	22	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140812291	A	A	140812291	2	1	9	1	0	0	0	0	0	0	0	1	11647	639	23	1		1	PCDHGA12	5	140812291	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	270	140812291	40102969	6916	15067											
PCDHGC3	5098	broad.mit.edu	37	chr5	140857872	140857872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagacctataccgagcccCggtgagctcactgtaccgaa	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140857872	A	A	140857872	3	1	9	1	0	0	0	0	1	0	0	0	11663	652	23	1	2191	1	PCDHGC3	5	140857872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45581	140857872	40057388	6917	15068											
PCDHGC5	56097	broad.mit.edu	37	chr5	140890719	140890719	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcaacaagaagaagtcGggcaagaaggagaagaagta	14	4	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140890719	T	T	140890719	2	4	9	1	0	0	0	0	0	0	0	1	11665	1103	39	1		1	PCDHGC5	5	140890719	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32847	140890719	40024541	6918	15069											
DIAPH1	1729	broad.mit.edu	37	chr5	140903716	140903716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgcttacttaccttgacGgggccctctcttccgtcgga	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140903716	T	T	140903716	3	4	9	1	0	0	0	0	1	0	0	0	4558	1116	39	1	171	1	DIAPH1	5	140903716	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12997	140903716	40011544	6919	15070											
DIAPH1	1729	broad.mit.edu	37	chr5	140951490	140951490	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatcaaagaggaaggtactCactcttggtctgggcagaga	13	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140951490	A	A	140951490	1	1	9	0	1	0	0	0	0	0	0	0	4558	841	29	3		3	DIAPH1	5	140951490	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47774	140951490	39963770	6920	15071											
DIAPH1	1729	broad.mit.edu	37	chr5	140958698	140958698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttaatccatccagcagcGgctggaaacgttccacttca	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140958698	T	T	140958698	3	4	9	1	0	0	0	0	1	0	0	0	4558	1116	39	1	3008	1	DIAPH1	5	140958698	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7208	140958698	39956562	6921	15072											
DIAPH1	1729	broad.mit.edu	37	chr5	140962857	140962857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaccaaatgtttgcaccCaactgtaaggaacagagaga	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140962857	A	A	140962857	3	1	9	1	0	0	0	0	1	0	0	0	4558	595	21	2	3374	2	DIAPH1	5	140962857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4159	140962857	39952403	6922	15073											
HDAC3	8841	broad.mit.edu	37	chr5	141009679	141009679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagcagaactcaaagagccCgggaaacactgggctgcagg	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141009679	A	A	141009679	3	1	9	1	0	0	0	0	1	0	0	0	7075	652	23	1	1039	1	HDAC3	5	141009679	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46822	141009679	39905581	6923	15074											
ARAP3	64411	broad.mit.edu	37	chr5	141035827	141035827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttccaaaggccactccCgttctggtttagagctctga	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141035827	A	A	141035827	3	1	9	1	0	0	0	0	1	0	0	0	842	652	23	1	852	1	ARAP3	5	141035827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26148	141035827	39879433	6924	15075											
KIAA0141	9812	broad.mit.edu	37	chr5	141314074	141314074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggcccaagctttcctcGgggtgcttttcaccaaggag	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141314074	T	T	141314074	3	4	9	1	0	0	0	0	1	0	0	0	8226	1116	39	1	1110	1	KIAA0141	5	141314074	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	278247	141314074	39601186	6925	15076											
RNF14	9604	broad.mit.edu	37	chr5	141353170	141353170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttatgtcgtcagaagatcGagaagctcaggaggatgaat	12	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141353170	T	T	141353170	3	4	9	1	0	0	0	0	1	0	0	0	13554	1058	37	3	19	3	RNF14	5	141353170	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39096	141353170	39562090	6926	15077											
RNF14	9604	broad.mit.edu	37	chr5	141358245	141358245	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtttctgtgagaagctGggtagtgaatgcatgtactt	12	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141358245	T	T	141358245	2	4	9	1	0	0	0	0	0	0	0	1	13554	1335	47	2		2	RNF14	5	141358245	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5075	141358245	39557015	6927	15078											
RNF14	9604	broad.mit.edu	37	chr5	141359784	141359784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgtggtgtactgccccCggccgtgctgccagctgcct	13	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141359784	A	A	141359784	2	1	9	1	0	0	0	0	0	0	0	1	13554	643	23	1		1	RNF14	5	141359784	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1539	141359784	39555476	6928	15079											
SPRY4	81848	broad.mit.edu	37	chr5	141694477	141694477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggccccgccccgggtcCgctttgggccggtggtcagg	18	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141694477	A	A	141694477	3	1	9	1	0	0	0	0	1	0	0	0	15226	652	23	1	706	1	SPRY4	5	141694477	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	334693	141694477	39220783	6929	15080											
ARHGAP26	23092	broad.mit.edu	37	chr5	142281566	142281566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaactggccaaggatttcGgggacttcaagacacagtta	11	9	1	1	rs148543665		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142281566	T	T	142281566	3	4	9	1	0	0	0	0	1	0	0	0	877	1116	39	1	690	1	ARHGAP26	5	142281566	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	587089	142281566	38633694	6930	15081											
ARHGAP26	23092	broad.mit.edu	37	chr5	142513549	142513549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatatttaacaccgtgccCgatatgcctctcaccaatgc	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142513549	A	A	142513549	2	1	9	1	0	0	0	0	0	0	0	1	877	639	23	1		1	ARHGAP26	5	142513549	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	231983	142513549	38401711	6931	15082											
KCTD16	57528	broad.mit.edu	37	chr5	143586848	143586848	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtttcggagagttcccCggattttggtttgtggaagg	14	7	0	1	rs35597558		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143586848	A	A	143586848	2	1	9	1	0	0	0	0	0	0	0	1	8173	643	23	1		1	KCTD16	5	143586848	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1073299	143586848	37328412	6932	15083											
RBM27	54439	broad.mit.edu	37	chr5	145609353	145609353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagcggaatgaattgtacCgtgagaagtatgactggaga	14	4	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145609353	A	A	145609353	3	1	9	1	0	0	0	0	1	0	0	0	13235	652	23	1	487	1	RBM27	5	145609353	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2022505	145609353	35305907	6933	15084											
RBM27	54439	broad.mit.edu	37	chr5	145640532	145640532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatatttctatcagctcacCttgtttaaatgagtcagtgg	8	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145640532	A	A	145640532	1	1	9	0	1	0	0	0	0	0	0	0	13235	696	24	2		2	RBM27	5	145640532	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31179	145640532	35274728	6934	15085											
RBM27	54439	broad.mit.edu	37	chr5	145641215	145641215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggaaaataatgagcaacCgacactacagtcctcagcac	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145641215	A	A	145641215	3	1	9	1	0	0	0	0	1	0	0	0	13235	652	23	1	2086	1	RBM27	5	145641215	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	683	145641215	35274045	6935	15086											
STK32A	202374	broad.mit.edu	37	chr5	146752790	146752790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgatgtccagaacttccCgtatatgaatgatataaact	6	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146752790	A	A	146752790	3	1	9	1	0	0	0	0	1	0	0	0	15415	652	23	1	903	1	STK32A	5	146752790	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1111575	146752790	34162470	6936	15087											
DPYSL3	1809	broad.mit.edu	37	chr5	146780283	146780283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccagatgacagacatcCgctcctccacaccattggtg	8	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146780283	A	A	146780283	3	1	9	1	0	0	0	0	1	0	0	0	4788	652	23	1	650	1	DPYSL3	5	146780283	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27493	146780283	34134977	6937	15088											
SPINK5	11005	broad.mit.edu	37	chr5	147473972	147473972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaggcttttttgtacacGggagagtgatccagtccgtg	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147473972	T	T	147473972	3	4	9	1	0	0	0	0	1	0	0	0	15180	1116	39	1	756	1	SPINK5	5	147473972	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	693689	147473972	33441288	6938	15089											
FBXO38	81545	broad.mit.edu	37	chr5	147820013	147820013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattaaatatgaattcttccCtgaagccactcgaagtgaag	7	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147820013	A	A	147820013	3	1	9	1	0	0	0	0	1	0	0	0	5803	681	24	2	3271	2	FBXO38	5	147820013	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	346041	147820013	33095247	6939	15090											
ABLIM3	22885	broad.mit.edu	37	chr5	148617061	148617061	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacctggcggctctcccCaaggttaagtctatctacga	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148617061	A	A	148617061	2	1	9	1	0	0	0	0	0	0	0	1	96	581	21	2		2	ABLIM3	5	148617061	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	797048	148617061	32298199	6940	15091											
CSNK1A1	1452	broad.mit.edu	37	chr5	148929660	148929660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgggggatgccaacccCaccttgaagaatcttataga	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148929660	A	A	148929660	3	1	9	1	0	0	0	0	1	0	0	0	3984	594	21	2	929	2	CSNK1A1	5	148929660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	312599	148929660	31985600	6941	15092											
ARHGEF37	389337	broad.mit.edu	37	chr5	148997825	148997825	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctctccaagaagaccaccCggctgagccagctgctgaag	10	16	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148997825	G	G	148997825	3	3	9	1	0	0	0	0	1	0	0	0	908	643	23	4	763	4	ARHGEF37	5	148997825	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68165	148997825	31917435	6942	15093											
PDE6A	5145	broad.mit.edu	37	chr5	149242653	149242653	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagggagtggggtggtGggagtccctgcttccccctt	16	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149242653	T	T	149242653	1	4	9	0	1	0	0	0	0	0	0	0	11739	1363	47	2		2	PDE6A	5	149242653	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	244828	149242653	31672607	6943	15094											
PDE6A	5145	broad.mit.edu	37	chr5	149242787	149242787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcgattgttggtgatccCgtccaacattggggtgatct	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149242787	A	A	149242787	3	1	9	1	0	0	0	0	1	0	0	0	11739	652	23	1	189	1	PDE6A	5	149242787	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	149242787	31672473	6944	15095											
PDGFRB	5159	broad.mit.edu	37	chr5	149510024	149510024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatatgccaagaagaacGggcgggactagataaccttc	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149510024	T	T	149510024	1	4	9	0	1	0	0	0	0	0	0	0	11756	1131	39	1		1	PDGFRB	5	149510024	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	267237	149510024	31405236	6945	15096											
CDX1	1044	broad.mit.edu	37	chr5	149562371	149562371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaccgcgtggtctacacCgaccaccaacgcctggagct	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149562371	A	A	149562371	2	1	9	1	0	0	0	0	0	0	0	1	3212	639	23	1		1	CDX1	5	149562371	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52347	149562371	31352889	6946	15097											
ARSI	340075	broad.mit.edu	37	chr5	149676865	149676865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttttcttgcgacgacccCgggagaagcttcgagccctc	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149676865	A	A	149676865	3	1	9	1	0	0	0	0	1	0	0	0	998	652	23	1	91	1	ARSI	5	149676865	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114494	149676865	31238395	6947	15098											
NDST1	3340	broad.mit.edu	37	chr5	149932778	149932778	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttcccgttacagtccCgagccttcctgaaggactat	7	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149932778	A	A	149932778	2	1	9	1	0	0	0	0	0	0	0	1	10350	644	23	1		1	NDST1	5	149932778	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	255913	149932778	30982482	6948	15099											
NDST1	3340	broad.mit.edu	37	chr5	149932803	149932803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgaaggactattaccGggaccacaacatcgagctct	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149932803	T	T	149932803	3	4	9	1	0	0	0	0	1	0	0	0	10350	1116	39	1	2612	1	NDST1	5	149932803	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	149932803	30982457	6949	15100											
SYNPO	11346	broad.mit.edu	37	chr5	150028929	150028929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggttcctgccagcaagacGggcattctggaggagtcgat	15	10	1	1	rs140136614		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150028929	T	T	150028929	2	4	9	1	0	0	0	0	0	0	0	1	15575	1103	39	1		1	SYNPO	5	150028929	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96126	150028929	30886331	6950	15101											
RBM22	55696	broad.mit.edu	37	chr5	150071438	150071438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggaacatgtgtggccCaaaacctgcagatacgagag	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150071438	A	A	150071438	3	1	9	1	0	0	0	0	1	0	0	0	13230	594	21	2	128	2	RBM22	5	150071438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42509	150071438	30843822	6951	15102											
RBM22	55696	broad.mit.edu	37	chr5	150075167	150075167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgaggcattgttgaagccCgctttagaagcttgtcagct	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150075167	A	A	150075167	3	1	9	1	0	0	0	0	1	0	0	0	13230	652	23	1	635	1	RBM22	5	150075167	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3729	150075167	30840093	6952	15103											
TNIP1	10318	broad.mit.edu	37	chr5	150418702	150418702	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggtactcacgctgtcGggtgagtgggctcagctgat	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150418702	T	T	150418702	2	4	9	1	0	0	0	0	0	0	0	1	16437	1124	39	1		1	TNIP1	5	150418702	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	343535	150418702	30496558	6953	15104											
SLC36A2	153201	broad.mit.edu	37	chr5	150712968	150712968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtactctgaaatgagacCtgaattttttaaaattgaat	8	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150712968	A	A	150712968	1	1	9	0	1	0	0	0	0	0	0	0	14708	696	24	2		2	SLC36A2	5	150712968	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	294266	150712968	30202292	6954	15105											
FAT2	2196	broad.mit.edu	37	chr5	150887039	150887039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcagtagaagagaagccCgacagtgcttatgataatga	13	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150887039	A	A	150887039	3	1	9	1	0	0	0	0	1	0	0	0	5747	652	23	1	864	1	FAT2	5	150887039	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	174071	150887039	30028221	6955	15106											
FAT2	2196	broad.mit.edu	37	chr5	150921975	150921975	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcttcagaagcaaatcGgggagcattgtcattctcat	9	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150921975	T	T	150921975	2	4	9	1	0	0	0	0	0	0	0	1	5747	1124	39	1		1	FAT2	5	150921975	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34936	150921975	29993285	6956	15107											
FAT2	2196	broad.mit.edu	37	chr5	150946879	150946879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggcgaaaaggggatccCcagtctgatgctcttacccg	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150946879	A	A	150946879	3	1	9	1	0	0	0	0	1	0	0	0	5747	624	22	2	11527	2	FAT2	5	150946879	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24904	150946879	29968381	6957	15108											
GRIA1	2890	broad.mit.edu	37	chr5	153085525	153085525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagagtttgaggaaggacGggaccagacaaccagtgacc	14	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153085525	T	T	153085525	3	4	9	1	0	0	0	0	1	0	0	0	6833	1116	39	1	1763	1	GRIA1	5	153085525	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2138646	153085525	27829735	6958	15109											
GALNT10	55568	broad.mit.edu	37	chr5	153765879	153765879	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctctgacaggtctccCgtgatggccggtggactgtt	12	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153765879	A	A	153765879	2	1	9	1	0	0	0	0	0	0	0	1	6270	639	23	1		1	GALNT10	5	153765879	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	680354	153765879	27149381	6959	15110											
GEMIN5	25929	broad.mit.edu	37	chr5	154278871	154278871	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaatcgcaatagcttccCtaaaggcaagaacagaccct	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154278871	A	A	154278871	5	1	9	1	0	0	0	0	0	0	1	0	6395	695	24	2	1540	2	GEMIN5	5	154278871	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	512992	154278871	26636389	6960	15111											
KIF4B	285643	broad.mit.edu	37	chr5	154394458	154394458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattgttaatattgatcccCacacagctgaacttaatcat	4	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154394458	A	A	154394458	3	1	9	1	0	0	0	0	1	0	0	0	8374	594	21	2	1041	2	KIF4B	5	154394458	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115587	154394458	26520802	6961	15112											
SGCD	6444	broad.mit.edu	37	chr5	155756602	155756602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagatggtgagtaattccCgggagcgaagcttgttcaag	15	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155756602	A	A	155756602	1	1	9	0	1	0	0	0	0	0	0	0	14314	667	23	1		1	SGCD	5	155756602	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1362144	155756602	25158658	6962	15113											
TIMD4	91937	broad.mit.edu	37	chr5	156378932	156378932	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggacgattgtaatgccCaataaaattgtgtttcctgc	9	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156378932	A	A	156378932	1	1	9	0	1	0	0	0	0	0	0	0	16026	609	21	2		2	TIMD4	5	156378932	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	622330	156378932	24536328	6963	15114											
HAVCR1	26762	broad.mit.edu	37	chr5	156464343	156464343	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctttagtggtattggcCgtcagtagactatgttctag	10	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156464343	A	A	156464343	2	1	9	1	0	0	0	0	0	0	0	1	7039	639	23	1		1	HAVCR1	5	156464343	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85411	156464343	24450917	6964	15115											
HAVCR1	26762	broad.mit.edu	37	chr5	156469680	156469680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctgaagactctgtcacGgtgtcattcccatctactca	6	14	6	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156469680	T	T	156469680	2	4	9	1	0	0	0	0	0	0	0	1	7039	1103	39	1		1	HAVCR1	5	156469680	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5337	156469680	24445580	6965	15116											
HAVCR1	26762	broad.mit.edu	37	chr5	156479463	156479463	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgttgttgttggaatgctCgttgtcgttggaacgctcgt	13	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156479463	A	A	156479463	2	1	9	1	0	0	0	0	0	0	0	1	7039	871	31	3		3	HAVCR1	5	156479463	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9783	156479463	24435797	6966	15117											
HAVCR1	26762	broad.mit.edu	37	chr5	156479607	156479607	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcgttggaacagtggtgctCgttcgaacagtcgtgacggt	15	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156479607	A	A	156479607	2	1	9	1	0	0	0	0	0	0	0	1	7039	871	31	3		3	HAVCR1	5	156479607	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	144	156479607	24435653	6967	15118											
MED7	9443	broad.mit.edu	37	chr5	156566491	156566491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaaagatttattagagcCacaagacaaacctgttacat	6	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156566491	A	A	156566491	1	1	9	0	1	0	0	0	0	0	0	0	9545	609	21	2		2	MED7	5	156566491	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	86884	156566491	24348769	6968	15119											
FAM71B	153745	broad.mit.edu	37	chr5	156589500	156589500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatcatctccgtcttctcGgatgtcatagtgccactgat	8	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156589500	T	T	156589500	2	4	9	1	0	0	0	0	0	0	0	1	5659	1103	39	1		1	FAM71B	5	156589500	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23009	156589500	24325760	6969	15120											
FAM71B	153745	broad.mit.edu	37	chr5	156592555	156592555	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaacctgccccatgttctcGagcctttgagaggcttacca	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156592555	T	T	156592555	1	4	9	0	1	0	0	0	0	0	0	0	5659	1073	37	3		3	FAM71B	5	156592555	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3055	156592555	24322705	6970	15121											
FAM71B	153745	broad.mit.edu	37	chr5	156592698	156592698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagcaaaagagatcttccCgtgtgtcagaagagggacac	11	8	2	3	rs146865558		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156592698	A	A	156592698	3	1	9	1	0	0	0	0	1	0	0	0	5659	652	23	1	1343	1	FAM71B	5	156592698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143	156592698	24322562	6971	15122											
ITK	3702	broad.mit.edu	37	chr5	156665172	156665172	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggactgcaggaacatacacCgtgtctgttttcaccaaggc	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156665172	A	A	156665172	2	1	9	1	0	0	0	0	0	0	0	1	7979	639	23	1		1	ITK	5	156665172	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72474	156665172	24250088	6972	15123											
ITK	3702	broad.mit.edu	37	chr5	156672853	156672853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaatgggactgaggccccCggaacattctgaccttctcc	11	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156672853	A	A	156672853	1	1	9	0	1	0	0	0	0	0	0	0	7979	667	23	1		1	ITK	5	156672853	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7681	156672853	24242407	6973	15124											
CYFIP2	26999	broad.mit.edu	37	chr5	156757806	156757806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattatggcgtcatcattcCgtatccaccgtccaatcgct	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156757806	A	A	156757806	3	1	9	1	0	0	0	0	1	0	0	0	4171	652	23	1	2287	1	CYFIP2	5	156757806	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84953	156757806	24157454	6974	15125											
CYFIP2	26999	broad.mit.edu	37	chr5	156760422	156760422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggaccaagctatcagcCgctttgagagtgaggacctg	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156760422	A	A	156760422	3	1	9	1	0	0	0	0	1	0	0	0	4171	652	23	1	2431	1	CYFIP2	5	156760422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2616	156760422	24154838	6975	15126											
CYFIP2	26999	broad.mit.edu	37	chr5	156785981	156785981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtccattcagtactcaGgcacttatttgccactacct	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156785981	T	T	156785981	1	4	9	0	1	0	0	0	0	0	0	0	4171	1015	35	2		2	CYFIP2	5	156785981	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25559	156785981	24129279	6976	15127											
ADAM19	8728	broad.mit.edu	37	chr5	156899278	156899278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccactgccatgagtctGggccctagacattgcctgca	9	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156899278	T	T	156899278	1	4	9	0	1	0	0	0	0	0	0	0	240	1363	47	2		2	ADAM19	5	156899278	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	113297	156899278	24015982	6977	15128											
NIPAL4	348938	broad.mit.edu	37	chr5	156899456	156899456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcatctgctctgtgatcGgggccttctctgtggctgct	11	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156899456	T	T	156899456	3	4	9	1	0	0	0	0	1	0	0	0	10522	1116	39	1	911	1	NIPAL4	5	156899456	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178	156899456	24015804	6978	15129											
NIPAL4	348938	broad.mit.edu	37	chr5	156899488	156899488	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctgctgtcaaggggctGggcatcaccatcaagaactt	13	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156899488	T	T	156899488	2	4	9	1	0	0	0	0	0	0	0	1	10522	1335	47	2		2	NIPAL4	5	156899488	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	156899488	24015772	6979	15130											
ADAM19	8728	broad.mit.edu	37	chr5	156916166	156916166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttggcatgaccagtccCgctgttctgagaaaccctga	12	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156916166	A	A	156916166	3	1	9	1	0	0	0	0	1	0	0	0	240	652	23	1	503	1	ADAM19	5	156916166	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16678	156916166	23999094	6980	15131											
ADAM19	8728	broad.mit.edu	37	chr5	156920172	156920172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgacactggatcttccCacacttcgcatctctgggca	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156920172	A	A	156920172	3	1	9	1	0	0	0	0	1	0	0	0	240	594	21	2	1071	2	ADAM19	5	156920172	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4006	156920172	23995088	6981	15132											
SOX30	11063	broad.mit.edu	37	chr5	157065575	157065575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtctgtttgggaaggccCagtaaagcgttggggtggga	18	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157065575	A	A	157065575	3	1	9	1	0	0	0	0	1	0	0	0	15066	594	21	2	726	2	SOX30	5	157065575	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145403	157065575	23849685	6982	15133											
SOX30	11063	broad.mit.edu	37	chr5	157078492	157078492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgggcttttgcctgcccCgccttgcatcgagtctctca	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157078492	A	A	157078492	3	1	9	1	0	0	0	0	1	0	0	0	15066	652	23	1	1686	1	SOX30	5	157078492	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12917	157078492	23836768	6983	15134											
CLINT1	9685	broad.mit.edu	37	chr5	157214696	157214696	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcaaaggcatcttgcttGggttgcacagttccagaagt	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157214696	T	T	157214696	2	4	9	1	0	0	0	0	0	0	0	1	3563	1335	47	2		2	CLINT1	5	157214696	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	136204	157214696	23700564	6984	15135											
CLINT1	9685	broad.mit.edu	37	chr5	157214782	157214782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcccagcagcggacatccCtatgttcatgttcatgccca	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157214782	A	A	157214782	3	1	9	1	0	0	0	0	1	0	0	0	3563	681	24	2	131	2	CLINT1	5	157214782	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	157214782	23700478	6985	15136											
CLINT1	9685	broad.mit.edu	37	chr5	157218741	157218741	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacataggcaaaccaagtccCacagtgttagtgctcatcat	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157218741	A	A	157218741	2	1	9	1	0	0	0	0	0	0	0	1	3563	581	21	2		2	CLINT1	5	157218741	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3959	157218741	23696519	6986	15137											
CLINT1	9685	broad.mit.edu	37	chr5	157236727	157236727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttatcactcagctcacCtaatttatcactgaatggaa	4	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157236727	A	A	157236727	3	1	9	1	0	0	0	0	1	0	0	0	3563	681	24	2	1301	2	CLINT1	5	157236727	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17986	157236727	23678533	6987	15138											
EBF1	1879	broad.mit.edu	37	chr5	158526458	158526458	+	Missense_Mutation	SNP	C	A	A													ccttcatgctgcttccactcCgttggatgctttcctgaatc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158526458	A	A	158526458	3	1	9	1	0	0	0	0	1	0	0	0	4920	652	23	1	1810	1	EBF1	5	158526458	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1289731	158526458	22388802	6988	15139	95	2									
EBF1	1879	broad.mit.edu	37	chr5	158526462	158526462	+	Missense_Mutation	SNP	G	T	T													catgctgcttccactccgttGgatgctttcctgaatcccaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158526462	T	T	158526462	3	4	9	1	0	0	0	0	1	0	0	0	4920	1357	47	2	1814	2	EBF1	5	158526462	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	158526462	22388798	6989	15140	95	2									
RNF145	153830	broad.mit.edu	37	chr5	158634771	158634771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtatgtacctgatctcCacataaactactagcaattc	4	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158634771	A	A	158634771	1	1	9	0	1	0	0	0	0	0	0	0	13558	603	21	2		2	RNF145	5	158634771	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	108309	158634771	22280489	6990	15141											
ADRA1B	147	broad.mit.edu	37	chr5	159344563	159344563	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttctacatccctctggcGgtcattctagtcatgtactg	7	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159344563	T	T	159344563	2	4	9	1	0	0	0	0	0	0	0	1	335	1103	39	1		1	ADRA1B	5	159344563	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	709792	159344563	21570697	6991	15142											
PWWP2A	114825	broad.mit.edu	37	chr5	159520766	159520766	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgtacatttttcgtttGggtcgcttaattttccgagg	9	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159520766	T	T	159520766	2	4	9	1	0	0	0	0	0	0	0	1	12953	1335	47	2		2	PWWP2A	5	159520766	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	176203	159520766	21394494	6992	15143											
C1QTNF2	114898	broad.mit.edu	37	chr5	159776220	159776220	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggcatagattaggaagccCgtaaagaggctgtctgtcca	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159776220	A	A	159776220	2	1	9	1	0	0	0	0	0	0	0	1	1983	639	23	1		1	C1QTNF2	5	159776220	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	255454	159776220	21139040	6993	15144											
SLU7	10569	broad.mit.edu	37	chr5	159830404	159830404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacatgctattgtaaggcCgcttcctctcatcaatctgc	6	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159830404	A	A	159830404	3	1	9	1	0	0	0	0	1	0	0	0	14869	652	23	1	115	1	SLU7	5	159830404	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54184	159830404	21084856	6994	15145											
SLU7	10569	broad.mit.edu	37	chr5	159834701	159834701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagctttaaacaatccCaaacgtcttatgagctgata	5	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159834701	A	A	159834701	1	1	9	0	1	0	0	0	0	0	0	0	14869	609	21	2		2	SLU7	5	159834701	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4297	159834701	21080559	6995	15146											
SLU7	10569	broad.mit.edu	37	chr5	159834791	159834791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggtatctcctgtgtacCtaacaaagttatctccagca	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159834791	A	A	159834791	3	1	9	1	0	0	0	0	1	0	0	0	14869	681	24	2	841	2	SLU7	5	159834791	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	159834791	21080469	6996	15147											
SLU7	10569	broad.mit.edu	37	chr5	159835068	159835068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatttggatctaaattcCtcaaatactagaagaaaaaa	5	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159835068	A	A	159835068	3	1	9	1	0	0	0	0	1	0	0	0	14869	681	24	2	965	2	SLU7	5	159835068	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	277	159835068	21080192	6997	15148											
ATP10B	23120	broad.mit.edu	37	chr5	160061382	160061382	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attttcttggtgagaatactCgctgcccatgatggtgcaac	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160061382	A	A	160061382	4	1	9	1	0	0	0	0	0	1	0	0	1121	893	31	3	3085	3	ATP10B	5	160061382	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	226314	160061382	20853878	6998	15149											
ATP10B	23120	broad.mit.edu	37	chr5	160114832	160114832	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattgctcaaagagattccGgggcaggaaggtgaagaggg	16	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160114832	T	T	160114832	2	4	9	1	0	0	0	0	0	0	0	1	1121	1115	39	1		1	ATP10B	5	160114832	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53450	160114832	20800428	6999	15150											
GABRA6	2559	broad.mit.edu	37	chr5	161113340	161113340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctatgacaatcggctgcGgccgggatttggaggtaaga	16	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161113340	T	T	161113340	3	4	9	1	0	0	0	0	1	0	0	0	6225	1116	39	1	149	1	GABRA6	5	161113340	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	998508	161113340	19801920	7000	15151											
GABRA6	2559	broad.mit.edu	37	chr5	161119078	161119078	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgtcttctctgcgcttatcGagttcgcagctgtcaactac	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161119078	T	T	161119078	4	4	9	1	0	0	0	0	0	1	0	0	6225	1059	37	3	988	3	GABRA6	5	161119078	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5738	161119078	19796182	7001	15152											
GABRA1	2554	broad.mit.edu	37	chr5	161300238	161300238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagtaaaatctggactcCggacacatttttccacaatg	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161300238	A	A	161300238	3	1	9	1	0	0	0	0	1	0	0	0	6220	652	23	1	385	1	GABRA1	5	161300238	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	181160	161300238	19615022	7002	15153											
GABRA1	2554	broad.mit.edu	37	chr5	161309653	161309653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggatcacgtctaaacCagtatgaccttcttggacaa	8	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161309653	A	A	161309653	3	1	9	1	0	0	0	0	1	0	0	0	6220	595	21	2	671	2	GABRA1	5	161309653	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9415	161309653	19605607	7003	15154											
GABRA1	2554	broad.mit.edu	37	chr5	161324208	161324208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatttggccaggggcgaccCgggcttagccaccattgcta	12	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161324208	A	A	161324208	3	1	9	1	0	0	0	0	1	0	0	0	6220	652	23	1	1185	1	GABRA1	5	161324208	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14555	161324208	19591052	7004	15155											
GABRG2	2566	broad.mit.edu	37	chr5	161495049	161495049	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacaggaagctcagtctactCgactcctgtattttcacaga	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161495049	A	A	161495049	4	1	9	1	0	0	0	0	0	1	0	0	6232	893	31	3	46	3	GABRG2	5	161495049	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	170841	161495049	19420211	7005	15156											
GABRG2	2566	broad.mit.edu	37	chr5	161524722	161524722	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaccattaaagtcctcCgattgaacagcaacatggtg	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161524722	A	A	161524722	2	1	9	1	0	0	0	0	0	0	0	1	6232	644	23	1		1	GABRG2	5	161524722	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29673	161524722	19390538	7006	15157											
GABRG2	2566	broad.mit.edu	37	chr5	161528319	161528319	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgccccttggagttctcCagttgtaagtaatattcctt	7	11	1	0	rs17855004		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161528319	A	A	161528319	2	1	9	1	0	0	0	0	0	0	0	1	6232	581	21	2		2	GABRG2	5	161528319	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3597	161528319	19386941	7007	15158											
GABRG2	2566	broad.mit.edu	37	chr5	161569305	161569305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaataaggatgctgttcCagccagaacatctttaggtg	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161569305	A	A	161569305	3	1	9	1	0	0	0	0	1	0	0	0	6232	594	21	2	1055	2	GABRG2	5	161569305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40986	161569305	19345955	7008	15159											
ODZ2	57451	broad.mit.edu	37	chr5	167489211	167489211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagttcaacatctccctcGggaaggacgctctctttggt	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167489211	T	T	167489211	3	4	9	1	0	0	0	0	1	0	0	0	10930	1116	39	1	1482	1	ODZ2	5	167489211	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5919906	167489211	13426049	7009	15160											
ODZ2	57451	broad.mit.edu	37	chr5	167517755	167517755	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacaaagagatggtttcCttcaatactgttgtcctagg	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167517755	A	A	167517755	2	1	9	1	0	0	0	0	0	0	0	1	10930	668	24	2		2	ODZ2	5	167517755	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28544	167517755	13397505	7010	15161											
ODZ2	57451	broad.mit.edu	37	chr5	167645394	167645394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgagaagaagattaacCgtctacgccaggtaacaacc	9	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167645394	A	A	167645394	3	1	9	1	0	0	0	0	1	0	0	0	10930	652	23	1	4561	1	ODZ2	5	167645394	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127639	167645394	13269866	7011	15162											
ODZ2	57451	broad.mit.edu	37	chr5	167673677	167673677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttttgagttgacatttGgggaaatggactaaattctg	11	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167673677	T	T	167673677	1	4	9	0	1	0	0	0	0	0	0	0	10930	1363	47	2		2	ODZ2	5	167673677	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28283	167673677	13241583	7012	15163											
ODZ2	57451	broad.mit.edu	37	chr5	167673910	167673910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccgtaatatttacaaccCgcctgaaagcaatgcttcgg	7	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167673910	A	A	167673910	3	1	9	1	0	0	0	0	1	0	0	0	10930	652	23	1	6045	1	ODZ2	5	167673910	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	233	167673910	13241350	7013	15164											
ODZ2	57451	broad.mit.edu	37	chr5	167675153	167675153	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttattatgactccaacccCgacttccagatggtcattgg	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167675153	A	A	167675153	2	1	9	1	0	0	0	0	0	0	0	1	10930	639	23	1		1	ODZ2	5	167675153	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1243	167675153	13240107	7014	15165											
WWC1	23286	broad.mit.edu	37	chr5	167850580	167850580	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctcaggcagcagcccCggatccctcacgtccagccg	10	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167850580	A	A	167850580	2	1	9	1	0	0	0	0	0	0	0	1	17538	639	23	1		1	WWC1	5	167850580	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	175427	167850580	13064680	7015	15166											
WWC1	23286	broad.mit.edu	37	chr5	167850972	167850972	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccttggagtttgaagaccCggagctgagtgccactcttt	11	11	1	3	rs146672179	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167850972	G	G	167850972	3	3	9	1	0	0	0	0	1	0	0	0	17538	652	23	4	1751	4	WWC1	5	167850972	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	392	167850972	13064288	7016	15167											
RARS	5917	broad.mit.edu	37	chr5	167932984	167932984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcattcattttccttcagGgttcttttaactttattaat	4	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167932984	T	T	167932984	1	4	9	0	1	0	0	0	0	0	0	0	13166	1247	43	2		2	RARS	5	167932984	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	82012	167932984	12982276	7017	15168											
RARS	5917	broad.mit.edu	37	chr5	167933782	167933782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgattggttggtatgaccCtaaagtaactcgagtcttcc	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167933782	A	A	167933782	3	1	9	1	0	0	0	0	1	0	0	0	13166	681	24	2	1334	2	RARS	5	167933782	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	798	167933782	12981478	7018	15169											
RARS	5917	broad.mit.edu	37	chr5	167944933	167944933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaggccggtgcattttacGgttccctgagattctgcaaa	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167944933	T	T	167944933	3	4	9	1	0	0	0	0	1	0	0	0	13166	1116	39	1	1793	1	RARS	5	167944933	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11151	167944933	12970327	7019	15170											
PANK3	79646	broad.mit.edu	37	chr5	167993178	167993178	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attagcaaaataatagcactCggcttgtccattgaaactga	7	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167993178	A	A	167993178	4	1	9	1	0	0	0	0	0	1	0	0	11512	893	31	3	657	3	PANK3	5	167993178	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48245	167993178	12922082	7020	15171											
SLIT3	6586	broad.mit.edu	37	chr5	168135040	168135040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtcctgggtgcatgtccCgttattcttgcacgggctgg	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168135040	A	A	168135040	3	1	9	1	0	0	0	0	1	0	0	0	14855	652	23	1	1830	1	SLIT3	5	168135040	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	141862	168135040	12780220	7021	15172											
SLIT3	6586	broad.mit.edu	37	chr5	168151410	168151410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacatcccacccaatactGggctccttacataagcgtca	5	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168151410	T	T	168151410	1	4	9	0	1	0	0	0	0	0	0	0	14855	1363	47	2		2	SLIT3	5	168151410	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16370	168151410	12763850	7022	15173											
SLIT3	6586	broad.mit.edu	37	chr5	168199939	168199939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcacacaaatgggttttGggctaagtggctgcgagagg	16	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168199939	T	T	168199939	3	4	9	1	0	0	0	0	1	0	0	0	14855	1357	47	2	3357	2	SLIT3	5	168199939	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48529	168199939	12715321	7023	15174											
DOCK2	1794	broad.mit.edu	37	chr5	169111405	169111405	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactatgggaagcagtgcaCagagcatcttttctttccat	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169111405	T	T	169111405	1	4	9	0	1	0	0	0	0	0	0	0	4727	493	17	4		4	DOCK2	5	169111405	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	911466	169111405	11803855	7024	15175											
DOCK2	1794	broad.mit.edu	37	chr5	169116232	169116232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtcccttggcagtaacGggctgccactcttcttccca	9	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169116232	T	T	169116232	1	4	9	0	1	0	0	0	0	0	0	0	4727	1131	39	1		1	DOCK2	5	169116232	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4827	169116232	11799028	7025	15176											
DOCK2	1794	broad.mit.edu	37	chr5	169127118	169127118	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtggtggccaggaagctGggattcccagagatcatcat	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169127118	T	T	169127118	2	4	9	1	0	0	0	0	0	0	0	1	4727	1335	47	2		2	DOCK2	5	169127118	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10886	169127118	11788142	7026	15177											
DOCK2	1794	broad.mit.edu	37	chr5	169138949	169138949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgctgaggtggctgtccCtattgaagacatgcagagga	14	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169138949	A	A	169138949	3	1	9	1	0	0	0	0	1	0	0	0	4727	681	24	2	1555	2	DOCK2	5	169138949	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11831	169138949	11776311	7027	15178											
DOCK2	1794	broad.mit.edu	37	chr5	169435729	169435729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaattggcttctccatcCgtgatatgtggtacaagctt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169435729	A	A	169435729	3	1	9	1	0	0	0	0	1	0	0	0	4727	652	23	1	3337	1	DOCK2	5	169435729	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	296780	169435729	11479531	7028	15179											
LCP2	3937	broad.mit.edu	37	chr5	169675760	169675760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaacctcggtttttccCatcaatgagcagaagtggca	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169675760	A	A	169675760	3	1	9	1	0	0	0	0	1	0	0	0	8764	594	21	2	62	2	LCP2	5	169675760	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	240031	169675760	11239500	7029	15180											
LCP2	3937	broad.mit.edu	37	chr5	169685085	169685085	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagaggatgggagagggttCatgggacttggcttagtaga	18	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169685085	A	A	169685085	3	1	9	1	0	0	0	0	1	0	0	0	8764	826	29	3	569	3	LCP2	5	169685085	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9325	169685085	11230175	7030	15181											
LCP2	3937	broad.mit.edu	37	chr5	169694140	169694140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaagagccggcactccCaaaacctgtctggatctgct	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169694140	A	A	169694140	1	1	9	0	1	0	0	0	0	0	0	0	8764	609	21	2		2	LCP2	5	169694140	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9055	169694140	11221120	7031	15182											
LCP2	3937	broad.mit.edu	37	chr5	169715058	169715058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcaggcaggttacaaccCacagaaagggctctgagcag	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169715058	A	A	169715058	1	1	9	0	1	0	0	0	0	0	0	0	8764	609	21	2		2	LCP2	5	169715058	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20918	169715058	11200202	7032	15183											
GABRP	2568	broad.mit.edu	37	chr5	170222392	170222392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggaaacaggctcatcCgcctcttctccaatggcacg	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170222392	A	A	170222392	3	1	9	1	0	0	0	0	1	0	0	0	6234	652	23	1	435	1	GABRP	5	170222392	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	507334	170222392	10692868	7033	15184											
RANBP17	64901	broad.mit.edu	37	chr5	170668132	170668132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgctgctgtcagtgtccCacagtgacttgctagtaagc	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170668132	A	A	170668132	3	1	9	1	0	0	0	0	1	0	0	0	13135	594	21	2	2713	2	RANBP17	5	170668132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	445740	170668132	10247128	7034	15185											
RANBP17	64901	broad.mit.edu	37	chr5	170720930	170720930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgtctttgaagactgtcGgaaccagtggtcagtatcca	10	9	2	2	rs145801901	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170720930	T	T	170720930	3	4	9	1	0	0	0	0	1	0	0	0	13135	1116	39	1	3089	1	RANBP17	5	170720930	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52798	170720930	10194330	7035	15186											
RANBP17	64901	broad.mit.edu	37	chr5	170722847	170722847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccagctgtcttcaggcGggacttggagtcggagctct	14	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170722847	T	T	170722847	1	4	9	0	1	0	0	0	0	0	0	0	13135	1131	39	1		1	RANBP17	5	170722847	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1917	170722847	10192413	7036	15187											
NPM1	4869	broad.mit.edu	37	chr5	170818428	170818428	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtctgtacagccaacGgtaagggcacttacatactt	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170818428	T	T	170818428	2	4	9	1	0	0	0	0	0	0	0	1	10682	1130	39	1		1	NPM1	5	170818428	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	95581	170818428	10096832	7037	15188											
FGF18	8817	broad.mit.edu	37	chr5	170863159	170863159	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaaccagacgcgggctcgGgacgatgtgagccgtaagca	16	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170863159	C	C	170863159	2	2	9	1	0	0	0	0	0	0	0	1	5903	1219	43	4		4	FGF18	5	170863159	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44731	170863159	10052101	7038	15189											
FBXW11	23291	broad.mit.edu	37	chr5	171295541	171295541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacatcaccaaggaaccCaaatcacaaaatttccccaa	2	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171295541	A	A	171295541	1	1	9	0	1	0	0	0	0	0	0	0	5821	609	21	2		2	FBXW11	5	171295541	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	432382	171295541	9619719	7039	15190											
UBTD2	92181	broad.mit.edu	37	chr5	171682400	171682400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaccgagacagggtccacGggcctcttgcttaacaggaa	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171682400	T	T	171682400	1	4	9	0	1	0	0	0	0	0	0	0	17034	1131	39	1		1	UBTD2	5	171682400	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	386859	171682400	9232860	7040	15191											
ATP6V0E1	8992	broad.mit.edu	37	chr5	172447761	172447761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagccatccggacagaacCgttcctgtgatggtgttaca	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172447761	A	A	172447761	1	1	9	0	1	0	0	0	0	0	0	0	1179	667	23	1		1	ATP6V0E1	5	172447761	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	765361	172447761	8467499	7041	15192											
C5orf41	153222	broad.mit.edu	37	chr5	172512929	172512929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgggacagttaggcaccCactttttttcacattttcaa	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172512929	A	A	172512929	1	1	9	0	1	0	0	0	0	0	0	0	2323	609	21	2		2	C5orf41	5	172512929	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	65168	172512929	8402331	7042	15193											
C5orf41	153222	broad.mit.edu	37	chr5	172517395	172517395	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaagacattgaaaatctGgagtctttcacagatgtcct	8	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172517395	T	T	172517395	2	4	9	1	0	0	0	0	0	0	0	1	2323	1335	47	2		2	C5orf41	5	172517395	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4466	172517395	8397865	7043	15194											
BNIP1	662	broad.mit.edu	37	chr5	172590780	172590780	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaatttaagtccatgtcGggcaccatccagctgggccg	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172590780	T	T	172590780	2	4	9	1	0	0	0	0	0	0	0	1	1482	1103	39	1		1	BNIP1	5	172590780	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	73385	172590780	8324480	7044	15195											
STC2	8614	broad.mit.edu	37	chr5	172752918	172752918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaagtcatgcaaatccCatgtaagccccgaatctcac	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172752918	A	A	172752918	3	1	9	1	0	0	0	0	1	0	0	0	15394	594	21	2	673	2	STC2	5	172752918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	162138	172752918	8162342	7045	15196											
STC2	8614	broad.mit.edu	37	chr5	172755135	172755135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtcggtcccccgcgccGggtcaaaggtggccaacacc	14	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172755135	T	T	172755135	3	4	9	1	0	0	0	0	1	0	0	0	15394	1116	39	1	862	1	STC2	5	172755135	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2217	172755135	8160125	7046	15197											
HMP19	51617	broad.mit.edu	37	chr5	173473741	173473741	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcttgccttaggtctGggaagaaaggcgtaaggatg	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173473741	T	T	173473741	1	4	9	0	1	0	0	0	0	0	0	0	7312	1363	47	2		2	HMP19	5	173473741	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	718606	173473741	7441519	7047	15198											
HMP19	51617	broad.mit.edu	37	chr5	173531364	173531364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggtggttgagtagtccCaggtcactatcaaattcagt	11	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173531364	A	A	173531364	1	1	9	0	1	0	0	0	0	0	0	0	7312	609	21	2		2	HMP19	5	173531364	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57623	173531364	7383896	7048	15199											
MSX2	4488	broad.mit.edu	37	chr5	174156491	174156491	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggcagcgtccatatatGgagcatcctacccgttccat	9	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174156491	T	T	174156491	4	4	9	1	0	0	0	0	0	1	0	0	9990	1349	47	2	715	2	MSX2	5	174156491	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	625127	174156491	6758769	7049	15200											
SFXN1	94081	broad.mit.edu	37	chr5	174940565	174940565	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacgcaagttgtcgtgtcCaggattctcatggcagcccc	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174940565	A	A	174940565	2	1	9	1	0	0	0	0	0	0	0	1	14307	581	21	2		2	SFXN1	5	174940565	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	784074	174940565	5974695	7050	15201											
SFXN1	94081	broad.mit.edu	37	chr5	174953631	174953631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaccctgtcatttctccCttatcccagttccatgtctg	4	14	3	0	rs141166229	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174953631	A	A	174953631	1	1	9	0	1	0	0	0	0	0	0	0	14307	696	24	2		2	SFXN1	5	174953631	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13066	174953631	5961629	7051	15202											
FAM153B	202134	broad.mit.edu	37	chr5	175528076	175528076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagacctggaggagcatGggccagggcagacagtctct	16	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175528076	T	T	175528076	3	4	9	1	0	0	0	0	1	0	0	0	5507	1348	47	2	631	2	FAM153B	5	175528076	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	574445	175528076	5387184	7052	15203											
FAM153B	202134	broad.mit.edu	37	chr5	175530239	175530239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcctcctagttctgatcaGggatgtacttcaggagctgt	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175530239	T	T	175530239	3	4	9	1	0	0	0	0	1	0	0	0	5507	1000	35	2	724	2	FAM153B	5	175530239	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2163	175530239	5385021	7053	15204											
C5orf25	375484	broad.mit.edu	37	chr5	175717588	175717588	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacatgccacactcatcagGggacgtgacacactcaccta	8	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175717588	C	C	175717588	3	2	9	1	0	0	0	0	1	0	0	0	2311	1247	43	4		4	C5orf25	5	175717588	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	187349	175717588	5197672	7054	15205											
C5orf25	375484	broad.mit.edu	37	chr5	175717636	175717636	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcacttaccaggagacaGgcctgactttacccagaatg	8	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175717636	T	T	175717636	3	4	9	1	0	0	0	0	1	0	0	0	2311	1015	35	2		2	C5orf25	5	175717636	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48	175717636	5197624	7055	15206											
C5orf25	375484	broad.mit.edu	37	chr5	175740609	175740609	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgcatggccttctcttGggcttagtatttatgagagc	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175740609	T	T	175740609	1	4	9	0	1	0	0	0	0	0	0	0	2311	1363	47	2		2	C5orf25	5	175740609	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22973	175740609	5174651	7056	15207											
C5orf25	375484	broad.mit.edu	37	chr5	175740745	175740745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgttatgtcgttcagaccCtagaagatgactttcagcag	10	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175740745	A	A	175740745	3	1	9	1	0	0	0	0	1	0	0	0	2311	680	24	2	498	2	C5orf25	5	175740745	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136	175740745	5174515	7057	15208											
NOP16	51491	broad.mit.edu	37	chr5	175811366	175811366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtaattcttctcatcacGggccatggcctaagaggaga	10	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175811366	T	T	175811366	3	4	9	1	0	0	0	0	1	0	0	0	10632	1116	39	1	136	1	NOP16	5	175811366	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70621	175811366	5103894	7058	15209											
CLTB	1212	broad.mit.edu	37	chr5	175819939	175819939	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccttcacgaaagcctcctCggatgccctgcgggtggaga	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175819939	A	A	175819939	4	1	9	1	0	0	0	0	0	1	0	0	3597	893	31	3	167	3	CLTB	5	175819939	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8573	175819939	5095321	7059	15210											
CDHR2	54825	broad.mit.edu	37	chr5	175995883	175995883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagggccctgggagccCgcgtcctggtggcggcaccc	18	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175995883	A	A	175995883	1	1	9	0	1	0	0	0	0	0	0	0	3149	667	23	1		1	CDHR2	5	175995883	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	175944	175995883	4919377	7060	15211											
CDHR2	54825	broad.mit.edu	37	chr5	176004673	176004673	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtcagccagaacttctcCgtcgccatggtgaccatcca	8	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176004673	A	A	176004673	2	1	9	1	0	0	0	0	0	0	0	1	3149	639	23	1		1	CDHR2	5	176004673	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8790	176004673	4910587	7061	15212											
CDHR2	54825	broad.mit.edu	37	chr5	176016107	176016107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacttcatctctaaggacGgggccaccatccctttccag	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176016107	T	T	176016107	3	4	9	1	0	0	0	0	1	0	0	0	3149	1116	39	1	3014	1	CDHR2	5	176016107	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11434	176016107	4899153	7062	15213											
CDHR2	54825	broad.mit.edu	37	chr5	176017127	176017127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatacattgtggacattcaGgacatagattctgcagctcg	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176017127	T	T	176017127	3	4	9	1	0	0	0	0	1	0	0	0	3149	991	35	2	3349	2	CDHR2	5	176017127	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1020	176017127	4898133	7063	15214											
GPRIN1	114787	broad.mit.edu	37	chr5	176026481	176026481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggtggcttctggtgtccCtgagatggaggctccatgtg	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176026481	A	A	176026481	3	1	9	1	0	0	0	0	1	0	0	0	6795	681	24	2	2675	2	GPRIN1	5	176026481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9354	176026481	4888779	7064	15215											
TSPAN17	26262	broad.mit.edu	37	chr5	176078805	176078805	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgggaggccttgacccCgtgtggctgtttgtggtagt	16	8	1	1	rs35207938	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176078805	A	A	176078805	2	1	9	1	0	0	0	0	0	0	0	1	16766	639	23	1		1	TSPAN17	5	176078805	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52324	176078805	4836455	7065	15216											
TSPAN17	26262	broad.mit.edu	37	chr5	176079687	176079687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcacacccaagccctGggaggtcaccagagccctgc	12	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176079687	T	T	176079687	1	4	9	0	1	0	0	0	0	0	0	0	16766	1363	47	2		2	TSPAN17	5	176079687	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	882	176079687	4835573	7066	15217											
UNC5A	90249	broad.mit.edu	37	chr5	176295265	176295265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtcagaaggcctacatcCgcatagcctgtgagtctagg	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176295265	A	A	176295265	3	1	9	1	0	0	0	0	1	0	0	0	17117	652	23	1	437	1	UNC5A	5	176295265	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	215578	176295265	4619995	7067	15218											
HK3	3101	broad.mit.edu	37	chr5	176308366	176308366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagctcttccaggcccCggttctcccggatcttctcc	8	19	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176308366	A	A	176308366	3	1	9	1	0	0	0	0	1	0	0	0	7259	652	23	1	215	1	HK3	5	176308366	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13101	176308366	4606894	7068	15219											
UIMC1	51720	broad.mit.edu	37	chr5	176335528	176335528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacactctacacatacctttGggttcttcagcctctgctgc	6	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176335528	T	T	176335528	3	4	9	1	0	0	0	0	1	0	0	0	17097	1348	47	2	331	2	UIMC1	5	176335528	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27162	176335528	4579732	7069	15220											
ZNF346	23567	broad.mit.edu	37	chr5	176489118	176489118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaactccatagaacagtacCaagctcatgtcagcggcttc	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176489118	A	A	176489118	3	1	9	1	0	0	0	0	1	0	0	0	17986	595	21	2	785	2	ZNF346	5	176489118	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	153590	176489118	4426142	7070	15221											
NSD1	64324	broad.mit.edu	37	chr5	176562276	176562276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgactgtcagtggaacatccCaaaatgcttatggacaagat	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176562276	A	A	176562276	3	1	9	1	0	0	0	0	1	0	0	0	10764	595	21	2	174	2	NSD1	5	176562276	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73158	176562276	4352984	7071	15222											
NSD1	64324	broad.mit.edu	37	chr5	176686993	176686993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattttcctgctttaggtcGgttgatgcgctgtgtccgct	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176686993	T	T	176686993	3	4	9	1	0	0	0	0	1	0	0	0	10764	1116	39	1	5020	1	NSD1	5	176686993	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	124717	176686993	4228267	7072	15223											
NSD1	64324	broad.mit.edu	37	chr5	176687113	176687113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcactttacccctaggcGgggctgccgaaatcatgagc	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176687113	T	T	176687113	3	4	9	1	0	0	0	0	1	0	0	0	10764	1116	39	1	5140	1	NSD1	5	176687113	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	120	176687113	4228147	7073	15224											
NSD1	64324	broad.mit.edu	37	chr5	176694500	176694500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatatatatatatgtgtatGgatgtacacatacatgactt	6	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176694500	T	T	176694500	1	4	9	0	1	0	0	0	0	0	0	0	10764	1363	47	2		2	NSD1	5	176694500	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7387	176694500	4220760	7074	15225											
NSD1	64324	broad.mit.edu	37	chr5	176710893	176710893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgtgaatggagataccCgtgtaggcctttttgcacta	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176710893	A	A	176710893	3	1	9	1	0	0	0	0	1	0	0	0	10764	652	23	1	6189	1	NSD1	5	176710893	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16393	176710893	4204367	7075	15226											
PRELID1	27166	broad.mit.edu	37	chr5	176731658	176731658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggaagacatagtacaccGggaggtgacccctgaccaga	13	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176731658	T	T	176731658	3	4	9	1	0	0	0	0	1	0	0	0	12577	1116	39	1	131	1	PRELID1	5	176731658	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20765	176731658	4183602	7076	15227											
LMAN2	10960	broad.mit.edu	37	chr5	176765587	176765587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtggacgtgcatttccCagtctttgaggaagcacggc	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176765587	A	A	176765587	3	1	9	1	0	0	0	0	1	0	0	0	8912	595	21	2	759	2	LMAN2	5	176765587	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33929	176765587	4149673	7077	15228											
LMAN2	10960	broad.mit.edu	37	chr5	176778115	176778115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggggtctcagctgctcGggaggcagggactagcagcc	17	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176778115	T	T	176778115	1	4	9	0	1	0	0	0	0	0	0	0	8912	1131	39	1		1	LMAN2	5	176778115	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12528	176778115	4137145	7078	15229											
GRK6	2870	broad.mit.edu	37	chr5	176863257	176863257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattccgagcgcttttcccCgcaggcccgctcactttgct	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176863257	A	A	176863257	3	1	9	1	0	0	0	0	1	0	0	0	6859	652	23	1	1287	1	GRK6	5	176863257	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85142	176863257	4052003	7079	15230											
DBN1	1627	broad.mit.edu	37	chr5	176887473	176887473	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggtacatcacagctgccCgcagaggccgatgcgactct	13	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176887473	A	A	176887473	2	1	9	1	0	0	0	0	0	0	0	1	4285	639	23	1		1	DBN1	5	176887473	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24216	176887473	4027787	7080	15231											
DBN1	1627	broad.mit.edu	37	chr5	176893750	176893750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccctgacccagagaccGggagccttggcaaagaactt	10	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176893750	T	T	176893750	1	4	9	0	1	0	0	0	0	0	0	0	4285	1131	39	1		1	DBN1	5	176893750	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6277	176893750	4021510	7081	15232											
DBN1	1627	broad.mit.edu	37	chr5	176895144	176895144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattttggcagagcagcttGggagtccttgacactgcaga	13	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176895144	T	T	176895144	3	4	9	1	0	0	0	0	1	0	0	0	4285	1357	47	2	1777	2	DBN1	5	176895144	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1394	176895144	4020116	7082	15233											
FAM193B	54540	broad.mit.edu	37	chr5	176965858	176965858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaacagcctgacttccttGgggaggagccctcctgcatt	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176965858	T	T	176965858	1	4	9	0	1	0	0	0	0	0	0	0	5572	1363	47	2		2	FAM193B	5	176965858	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	70714	176965858	3949402	7083	15234											
RMND5B	64777	broad.mit.edu	37	chr5	177565239	177565239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactacgtgggccagctgcGggctgagctggccagcgcag	17	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177565239	T	T	177565239	3	4	9	1	0	0	0	0	1	0	0	0	13509	1116	39	1	121	1	RMND5B	5	177565239	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	599381	177565239	3350021	7084	15235											
CLK4	57396	broad.mit.edu	37	chr5	178045738	178045738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcaacgtatctccggtccCgataatctcgctcattcaag	7	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178045738	A	A	178045738	3	1	9	1	0	0	0	0	1	0	0	0	3571	652	23	1	1286	1	CLK4	5	178045738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	480499	178045738	2869522	7085	15236											
CLK4	57396	broad.mit.edu	37	chr5	178050332	178050332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactatgagatctcctcttcCgcttgtgacttccacgatag	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178050332	A	A	178050332	3	1	9	1	0	0	0	0	1	0	0	0	3571	652	23	1	1407	1	CLK4	5	178050332	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4594	178050332	2864928	7086	15237											
ZNF354A	6940	broad.mit.edu	37	chr5	178140302	178140302	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgtttgaggctgtttcCttgtatttcacattttggtg	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178140302	A	A	178140302	4	1	9	1	0	0	0	0	0	1	0	0	17990	690	24	2	1244	2	ZNF354A	5	178140302	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89970	178140302	2774958	7087	15238											
ZNF454	285676	broad.mit.edu	37	chr5	178373365	178373365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgctgttgcaggaatcGgtgaccttcaaggatgtggc	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178373365	T	T	178373365	2	4	9	1	0	0	0	0	0	0	0	1	18050	1103	39	1		1	ZNF454	5	178373365	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	233063	178373365	2541895	7088	15239											
ZNF454	285676	broad.mit.edu	37	chr5	178392340	178392340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagcctttgtgtgcaGggcacaccttaccaaacacc	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178392340	A	A	178392340	3	1	9	1	0	0	0	0	1	0	0	0	18050	1000	35	4	949	4	ZNF454	5	178392340	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18975	178392340	2522920	7089	15240											
GRM6	2916	broad.mit.edu	37	chr5	178408908	178408908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccctgctctccctgcccCgctccacacagtcctcacca	5	23	2	0	rs115297481	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178408908	A	A	178408908	1	1	9	0	1	0	0	0	0	0	0	0	6867	667	23	1		1	GRM6	5	178408908	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16568	178408908	2506352	7090	15241											
ZNF354C	30832	broad.mit.edu	37	chr5	178506602	178506602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatacatgcttggaatgtgGgagaaccttcacacgtattg	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178506602	T	T	178506602	3	4	9	1	0	0	0	0	1	0	0	0	17992	1232	43	2	1183	2	ZNF354C	5	178506602	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97694	178506602	2408658	7091	15242											
ADAMTS2	9509	broad.mit.edu	37	chr5	178540960	178540960	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcataggggctcggtcgtcGagggattaggttgggtggct	18	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178540960	T	T	178540960	2	4	9	1	0	0	0	0	0	0	0	1	265	1066	37	3		3	ADAMTS2	5	178540960	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34358	178540960	2374300	7092	15243											
RUFY1	80230	broad.mit.edu	37	chr5	178996384	178996384	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggtgggactcaatgttctCgatgccaatctctgcttgaa	10	10	3	1	rs140249165	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178996384	A	A	178996384	2	1	9	1	0	0	0	0	0	0	0	1	13849	871	31	3		3	RUFY1	5	178996384	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	455424	178996384	1918876	7093	15244											
RUFY1	80230	broad.mit.edu	37	chr5	179012807	179012807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctacagctgcacagttGgggatcttcaaaccaagata	8	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179012807	T	T	179012807	3	4	9	1	0	0	0	0	1	0	0	0	13849	1348	47	2	997	2	RUFY1	5	179012807	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16423	179012807	1902453	7094	15245											
HNRNPH1	3187	broad.mit.edu	37	chr5	179046350	179046350	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgcacgaaggcctccccCgtactcctcccctggaagtc	8	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179046350	A	A	179046350	2	1	9	1	0	0	0	0	0	0	0	1	7333	639	23	1		1	HNRNPH1	5	179046350	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33543	179046350	1868910	7095	15246											
CANX	821	broad.mit.edu	37	chr5	179135309	179135309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacttgtgttgatgtctcGggccaagcatcatgccatct	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179135309	T	T	179135309	3	4	9	1	0	0	0	0	1	0	0	0	2644	1116	39	1	388	1	CANX	5	179135309	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	88959	179135309	1779951	7096	15247											
CANX	821	broad.mit.edu	37	chr5	179136958	179136958	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaactgcacttcatcttcCgacacaaaaaccccaaaacg	3	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179136958	A	A	179136958	2	1	9	1	0	0	0	0	0	0	0	1	2644	644	23	1		1	CANX	5	179136958	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1649	179136958	1778302	7097	15248											
MAML1	9794	broad.mit.edu	37	chr5	179195973	179195973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcagccagcaacaggcCgctgtaatgaagcagcatca	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179195973	A	A	179195973	2	1	9	1	0	0	0	0	0	0	0	1	9297	639	23	1		1	MAML1	5	179195973	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59015	179195973	1719287	7098	15249											
MGAT4B	11282	broad.mit.edu	37	chr5	179226075	179226075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgctcacctctgctggcGggttcacatgctccttccgc	10	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179226075	T	T	179226075	3	4	9	1	0	0	0	0	1	0	0	0	9639	1116	39	1	470	1	MGAT4B	5	179226075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30102	179226075	1689185	7099	15250											
C5orf45	51149	broad.mit.edu	37	chr5	179268935	179268935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaggtcttgactgaagcGggggcctggctcctccattt	14	11	1	2	rs139235798		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179268935	T	T	179268935	3	4	9	1	0	0	0	0	1	0	0	0	2327	1116	39	1	622	1	C5orf45	5	179268935	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42860	179268935	1646325	7100	15251											
C5orf45	51149	broad.mit.edu	37	chr5	179268992	179268992	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaacacactcctgttcCttccagctccagttcttggg	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179268992	A	A	179268992	4	1	9	1	0	0	0	0	0	1	0	0	2327	690	24	2	679	2	C5orf45	5	179268992	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	179268992	1646268	7101	15252											
MAPK9	5601	broad.mit.edu	37	chr5	179674866	179674866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggatacagtctcttcccGggaacaggactttatggagg	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179674866	T	T	179674866	1	4	9	0	1	0	0	0	0	0	0	0	9379	1116	39	1		1	MAPK9	5	179674866	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	405874	179674866	1240394	7102	15253											
MAPK9	5601	broad.mit.edu	37	chr5	179675960	179675960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccagcctcttccagcccCggctatactcaccgttctct	5	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179675960	A	A	179675960	1	1	9	0	1	0	0	0	0	0	0	0	9379	667	23	1		1	MAPK9	5	179675960	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1094	179675960	1239300	7103	15254											
MAPK9	5601	broad.mit.edu	37	chr5	179676014	179676014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggatgacttcgggcgccCggtagtaccgtgtcaccacg	13	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179676014	A	A	179676014	3	1	9	1	0	0	0	0	1	0	0	0	9379	652	23	1	849	1	MAPK9	5	179676014	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	179676014	1239246	7104	15255											
MAPK9	5601	broad.mit.edu	37	chr5	179676068	179676068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagttagtgcacgctgtcCgggccaggccaaagtcaagg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179676068	A	A	179676068	3	1	9	1	0	0	0	0	1	0	0	0	9379	652	23	1	903	1	MAPK9	5	179676068	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	179676068	1239192	7105	15256											
GFPT2	9945	broad.mit.edu	37	chr5	179728470	179728470	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcacgcagaacatgtgGgatgtccacttctcttccca	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179728470	T	T	179728470	1	4	9	0	1	0	0	0	0	0	0	0	6410	1247	43	2		2	GFPT2	5	179728470	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	52402	179728470	1186790	7106	15257											
GFPT2	9945	broad.mit.edu	37	chr5	179731847	179731847	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataatgaccatgatgacGggcatctgcttgtcaatcag	9	9	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179731847	T	T	179731847	2	4	9	1	0	0	0	0	0	0	0	1	6410	1103	39	1		1	GFPT2	5	179731847	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3377	179731847	1183413	7107	15258											
CNOT6	57472	broad.mit.edu	37	chr5	179977088	179977088	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaaattcgtagcttaccCgcagaactcggaaacatggt	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179977088	A	A	179977088	2	1	9	1	0	0	0	0	0	0	0	1	3654	639	23	1		1	CNOT6	5	179977088	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	245241	179977088	938172	7108	15259											
CNOT6	57472	broad.mit.edu	37	chr5	179992870	179992870	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgataaatatgcgaccCggcagttatacggctactgt	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179992870	A	A	179992870	2	1	9	1	0	0	0	0	0	0	0	1	3654	643	23	1		1	CNOT6	5	179992870	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15782	179992870	922390	7109	15260											
OR2Y1	134083	broad.mit.edu	37	chr5	180166177	180166177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagcccccttcacgtcCttgtttcttagtgtataaat	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180166177	A	A	180166177	3	1	9	1	0	0	0	0	1	0	0	0	11129	680	24	2	57	2	OR2Y1	5	180166177	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	173307	180166177	749083	7110	15261											
BTNL8	79908	broad.mit.edu	37	chr5	180326273	180326273	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcacctctcctgtcatcCgtttccatgccgtgaggtcc	8	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180326273	A	A	180326273	1	1	9	0	1	0	0	0	0	0	0	0	1577	667	23	1		1	BTNL8	5	180326273	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	160096	180326273	588987	7111	15262											
BTNL8	79908	broad.mit.edu	37	chr5	180335891	180335891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtgcaggattagttccCagtcttactaccagaaggcc	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180335891	A	A	180335891	3	1	9	1	0	0	0	0	1	0	0	0	1577	595	21	2	387	2	BTNL8	5	180335891	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9618	180335891	579369	7112	15263											
BTNL8	79908	broad.mit.edu	37	chr5	180335965	180335965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcataacttagttgtccCaaagaaccatcctggacttt	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180335965	A	A	180335965	1	1	9	0	1	0	0	0	0	0	0	0	1577	609	21	2		2	BTNL8	5	180335965	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	74	180335965	579295	7113	15264											
BTNL8	79908	broad.mit.edu	37	chr5	180338392	180338392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatgttgatagagacatcCagctactctgtcagtcctcg	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180338392	A	A	180338392	3	1	9	1	0	0	0	0	1	0	0	0	1577	595	21	2	487	2	BTNL8	5	180338392	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2427	180338392	576868	7114	15265											
BTNL8	79908	broad.mit.edu	37	chr5	180338412	180338412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctactctgtcagtcctcGggctggttcccccggcccac	10	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180338412	T	T	180338412	2	4	9	1	0	0	0	0	0	0	0	1	1577	1103	39	1		1	BTNL8	5	180338412	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	180338412	576848	7115	15266											
BTNL8	79908	broad.mit.edu	37	chr5	180374497	180374497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaataactaaaatgtctgtGggattgtttttcagatacct	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180374497	T	T	180374497	1	4	9	0	1	0	0	0	0	0	0	0	1577	1363	47	2		2	BTNL8	5	180374497	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36085	180374497	540763	7116	15267											
BTNL3	10917	broad.mit.edu	37	chr5	180430856	180430856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatactgtttctgtttcagGgaaaatccaggcggaactgg	11	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180430856	T	T	180430856	3	4	9	1	0	0	0	0	1	0	0	0	1576	1246	43	2	806	2	BTNL3	5	180430856	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56359	180430856	484404	7117	15268											
BTNL3	10917	broad.mit.edu	37	chr5	180430916	180430916	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcccacacatggttctccCgggtccctccctgatccaca	6	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180430916	G	G	180430916	1	3	9	0	1	0	0	0	0	0	0	0	1576	667	23	4		4	BTNL3	5	180430916	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	180430916	484344	7118	15269											
BTNL9	153579	broad.mit.edu	37	chr5	180486691	180486691	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accttccacgacaccttctcGggcgcgctctgtgcgtactt	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180486691	C	C	180486691	2	2	9	1	0	0	0	0	0	0	0	1	1578	1103	39	4		4	BTNL9	5	180486691	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55775	180486691	428569	7119	15270											
OR2V2	285659	broad.mit.edu	37	chr5	180581926	180581926	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatattctcaggtgaccaGgagcaacaaccgagccatgg	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180581926	T	T	180581926	1	4	9	0	1	0	0	0	0	0	0	0	11125	1015	35	2		2	OR2V2	5	180581926	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	95235	180581926	333334	7120	15271											
OR2V2	285659	broad.mit.edu	37	chr5	180581938	180581938	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgaccaggagcaacaaccGagccatggagacgtgggtga	16	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180581938	T	T	180581938	1	4	9	0	1	0	0	0	0	0	0	0	11125	1073	37	3		3	OR2V2	5	180581938	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	180581938	333322	7121	15272											
OR2V2	285659	broad.mit.edu	37	chr5	180581953	180581953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccgagccatggagacgtGggtgaaccagtcctacacag	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180581953	T	T	180581953	3	4	9	1	0	0	0	0	1	0	0	0	11125	1357	47	2	13	2	OR2V2	5	180581953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	180581953	333307	7122	15273											
TRIM52	84851	broad.mit.edu	37	chr5	180687115	180687115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctcacagaagagtttcaGggcttcctggtgtttaaagc	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180687115	T	T	180687115	3	4	9	1	0	0	0	0	1	0	0	0	16652	991	35	2	201	2	TRIM52	5	180687115	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	105162	180687115	228145	7123	15274											
DUSP22	56940	broad.mit.edu	37	chr6	304636	304636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctctcctagatcctgccCggcctgtacatcggcaactt	7	16	2	1	rs142889998	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	304636	A	A	304636	2	1	9	1	0	0	0	0	0	0	0	1	4861	639	23	1		1	DUSP22	6	304636	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08		304636	170810431	7124	15275											
DUSP22	56940	broad.mit.edu	37	chr6	350828	350828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttcttcacagccgctcCgggaattctgaagttctggg	10	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	350828	A	A	350828	3	1	9	1	0	0	0	0	1	0	0	0	4861	652	23	1	545	1	DUSP22	6	350828	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46192	350828	170764239	7125	15276											
IRF4	3662	broad.mit.edu	37	chr6	394966	394966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctggacatctcagaccCgtacaaagtgtacaggattg	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	394966	A	A	394966	3	1	9	1	0	0	0	0	1	0	0	0	7902	652	23	1	368	1	IRF4	6	394966	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44138	394966	170720101	7126	15277											
IRF4	3662	broad.mit.edu	37	chr6	397059	397059	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgcactcctttaccccCgtctcaatgccagtgcttct	5	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	397059	A	A	397059	1	1	9	0	1	0	0	0	0	0	0	0	7902	667	23	1		1	IRF4	6	397059	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2093	397059	170718008	7127	15278											
EXOC2	55770	broad.mit.edu	37	chr6	486758	486758	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacttgttcaggagctcttcCagtaacctgcaggacggaga	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	486758	G	G	486758	2	3	9	1	0	0	0	0	0	0	0	1	5344	581	21	4		4	EXOC2	6	486758	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	89699	486758	170628309	7128	15279											
EXOC2	55770	broad.mit.edu	37	chr6	488930	488930	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtattttaggaaacaaaacCttgttgagcacattcaactg	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	488930	A	A	488930	1	1	9	0	1	0	0	0	0	0	0	0	5344	696	24	2		2	EXOC2	6	488930	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2172	488930	170626137	7129	15280											
EXOC2	55770	broad.mit.edu	37	chr6	491133	491133	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccacttacttgctttcGggtgtcaggtaaacagccac	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	491133	T	T	491133	2	4	9	1	0	0	0	0	0	0	0	1	5344	1103	39	1		1	EXOC2	6	491133	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2203	491133	170623934	7130	15281											
EXOC2	55770	broad.mit.edu	37	chr6	497490	497490	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttggaaatggtgaacacCtggtttgaaataggaagaca	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	497490	A	A	497490	5	1	9	1	0	0	0	0	0	0	1	0	5344	695	24	2	354	2	EXOC2	6	497490	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	6357	497490	170617577	7131	15282											
EXOC2	55770	broad.mit.edu	37	chr6	572732	572732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcacccccctccactccCgcaaaactccaacatgcact	5	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	572732	A	A	572732	1	1	9	0	1	0	0	0	0	0	0	0	5344	667	23	1		1	EXOC2	6	572732	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	75242	572732	170542335	7132	15283											
HUS1B	135458	broad.mit.edu	37	chr6	656256	656256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcttccgattgtccaccCgcacttgcaccatgctctcc	7	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	656256	A	A	656256	3	1	9	1	0	0	0	0	1	0	0	0	7530	652	23	1	151	1	HUS1B	6	656256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83524	656256	170458811	7133	15284											
GMDS	2762	broad.mit.edu	37	chr6	1742987	1742987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaacttttactgagtatcCgaataacatgaggaacttct	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1742987	A	A	1742987	1	1	9	0	1	0	0	0	0	0	0	0	6550	667	23	1		1	GMDS	6	1742987	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1086731	1742987	169372080	7134	15285											
GMDS	2762	broad.mit.edu	37	chr6	2117771	2117771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtattaaatgaactggacCgccgtacaattccatggacc	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2117771	A	A	2117771	3	1	9	1	0	0	0	0	1	0	0	0	6550	652	23	1	987	1	GMDS	6	2117771	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	374784	2117771	168997296	7135	15286											
MYLK4	340156	broad.mit.edu	37	chr6	2675283	2675283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagaagccgtggtcacctGggcattgagtctggagtgga	16	8	2	2	rs144915326	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2675283	T	T	2675283	3	4	9	1	0	0	0	0	1	0	0	0	10153	1357	47	2	57	2	MYLK4	6	2675283	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	557512	2675283	168439784	7136	15287											
SERPINB1	1992	broad.mit.edu	37	chr6	2838055	2838055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactgcaggtagggaaggcGgactgaggaaacgaatgaca	15	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2838055	T	T	2838055	1	4	9	0	1	0	0	0	0	0	0	0	14209	1131	39	1		1	SERPINB1	6	2838055	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	162772	2838055	168277012	7137	15288											
SERPINB6	5269	broad.mit.edu	37	chr6	2953410	2953410	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccggagagagcaactcCgcaattttacctgagcggaa	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2953410	A	A	2953410	2	1	9	1	0	0	0	0	0	0	0	1	14218	639	23	1		1	SERPINB6	6	2953410	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	115355	2953410	168161657	7138	15289											
SERPINB6	5269	broad.mit.edu	37	chr6	2953471	2953471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggggcggctgcggatcccCgacacatcaggaatcggctg	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2953471	A	A	2953471	1	1	9	0	1	0	0	0	0	0	0	0	14218	667	23	1		1	SERPINB6	6	2953471	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	2953471	168161596	7139	15290											
BPHL	670	broad.mit.edu	37	chr6	3140647	3140647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccggcacctgctgccccGggtccagtgccccgccttga	12	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3140647	T	T	3140647	3	4	9	1	0	0	0	0	1	0	0	0	1498	1116	39	1	714	1	BPHL	6	3140647	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	187176	3140647	167974420	7140	15291											
PRPF4B	8899	broad.mit.edu	37	chr6	4049263	4049263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcagagtgctcgtcttcGggccgctggcattggaaaag	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4049263	T	T	4049263	3	4	9	1	0	0	0	0	1	0	0	0	12679	1116	39	1	1979	1	PRPF4B	6	4049263	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	908616	4049263	167065804	7141	15292											
PRPF4B	8899	broad.mit.edu	37	chr6	4056594	4056594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaagctttgcgattttGggtcggcttcacatgttgcg	11	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4056594	T	T	4056594	3	4	9	1	0	0	0	0	1	0	0	0	12679	1348	47	2	2552	2	PRPF4B	6	4056594	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7331	4056594	167058473	7142	15293											
PECI	10455	broad.mit.edu	37	chr6	4125502	4125502	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgtcagatgcatacacGgcatcgaatagcccaaggag	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4125502	T	T	4125502	2	4	9	1	0	0	0	0	0	0	0	1	11810	1103	39	1		1	PECI	6	4125502	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68908	4125502	166989565	7143	15294											
PECI	10455	broad.mit.edu	37	chr6	4131004	4131004	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaactagtaaactcaccttGggcaggctgccaagggcatt	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4131004	T	T	4131004	2	4	9	1	0	0	0	0	0	0	0	1	11810	1335	47	2		2	PECI	6	4131004	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5502	4131004	166984063	7144	15295											
CDYL	9425	broad.mit.edu	37	chr6	4935693	4935693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaattcaaagatgacacctGggagtgaactggtggtggga	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4935693	T	T	4935693	1	4	9	0	1	0	0	0	0	0	0	0	3215	1363	47	2		2	CDYL	6	4935693	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	804689	4935693	166179374	7145	15296											
FARS2	10667	broad.mit.edu	37	chr6	5431202	5431202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtgtcattagtagaagGgaaaatttgatcacaagaaa	10	3	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5431202	T	T	5431202	1	4	9	0	1	0	0	0	0	0	0	0	5735	1247	43	2		2	FARS2	6	5431202	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	495509	5431202	165683865	7146	15297											
FARS2	10667	broad.mit.edu	37	chr6	5431307	5431307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtagactgctacttccCttttacacatccttcctttg	6	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5431307	A	A	5431307	3	1	9	1	0	0	0	0	1	0	0	0	5735	681	24	2	816	2	FARS2	6	5431307	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	5431307	165683760	7147	15298											
F13A1	2162	broad.mit.edu	37	chr6	6175142	6175142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaggcaaaaatacaatcCaccagagagaaagtcacatt	7	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6175142	A	A	6175142	1	1	9	0	1	0	0	0	0	0	0	0	5383	609	21	2		2	F13A1	6	6175142	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	743835	6175142	164939925	7148	15299											
F13A1	2162	broad.mit.edu	37	chr6	6251211	6251211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccaaaccagactgtttcCaaacacttgcaagtttatgc	5	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6251211	A	A	6251211	1	1	9	0	1	0	0	0	0	0	0	0	5383	609	21	2		2	F13A1	6	6251211	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	76069	6251211	164863856	7149	15300											
F13A1	2162	broad.mit.edu	37	chr6	6318847	6318847	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgctgcattagagttattGggtggaactgctcttctgcc	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6318847	T	T	6318847	2	4	9	1	0	0	0	0	0	0	0	1	5383	1335	47	2		2	F13A1	6	6318847	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	67636	6318847	164796220	7150	15301											
F13A1	2162	broad.mit.edu	37	chr6	6318877	6318877	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttctgcctccaaaggcGgtcctggaagtttctgacat	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6318877	T	T	6318877	2	4	9	1	0	0	0	0	0	0	0	1	5383	1103	39	1		1	F13A1	6	6318877	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	6318877	164796190	7151	15302											
LY86	9450	broad.mit.edu	37	chr6	6626707	6626707	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctgcagagagataaactCgaacttgcatctgaggccag	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6626707	A	A	6626707	1	1	9	0	1	0	0	0	0	0	0	0	9188	899	31	3		3	LY86	6	6626707	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	307830	6626707	164488360	7152	15303											
RREB1	6239	broad.mit.edu	37	chr6	7182162	7182162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgacgtcaagttcgccCgctggcttggaaggttcaga	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7182162	A	A	7182162	2	1	9	1	0	0	0	0	0	0	0	1	13790	639	23	1		1	RREB1	6	7182162	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	555455	7182162	163932905	7153	15304											
RREB1	6239	broad.mit.edu	37	chr6	7231086	7231086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagcaggaaaacatctcCtttctgagcccttcttccct	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7231086	A	A	7231086	2	1	9	1	0	0	0	0	0	0	0	1	13790	668	24	2		2	RREB1	6	7231086	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48924	7231086	163883981	7154	15305											
CAGE1	285782	broad.mit.edu	37	chr6	7327198	7327198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattcagtgacagaacccCtaaacagccaattttttatt	4	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7327198	A	A	7327198	1	1	9	0	1	0	0	0	0	0	0	0	2598	696	24	2		2	CAGE1	6	7327198	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96112	7327198	163787869	7155	15306											
CAGE1	285782	broad.mit.edu	37	chr6	7331567	7331567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcaaacaaaagagaccCgtaagtctggacaaggcaaa	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7331567	A	A	7331567	1	1	9	0	1	0	0	0	0	0	0	0	2598	667	23	1		1	CAGE1	6	7331567	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4369	7331567	163783500	7156	15307											
CAGE1	285782	broad.mit.edu	37	chr6	7378878	7378878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcttggaggttggctaGggttgagggcagattccttg	17	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7378878	T	T	7378878	3	4	9	1	0	0	0	0	1	0	0	0	2598	1000	35	2	2010	2	CAGE1	6	7378878	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47311	7378878	163736189	7157	15308											
RIOK1	83732	broad.mit.edu	37	chr6	7404698	7404698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatcagaatccaaggctcGggagttgtacctgcaggtca	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7404698	T	T	7404698	3	4	9	1	0	0	0	0	1	0	0	0	13488	1116	39	1	940	1	RIOK1	6	7404698	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25820	7404698	163710369	7158	15309											
DSP	1832	broad.mit.edu	37	chr6	7579760	7579760	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcaatgagaagatcaccCgactgacttatgagattgaa	8	8	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579760	A	A	7579760	2	1	9	1	0	0	0	0	0	0	0	1	4821	644	23	1		1	DSP	6	7579760	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	175062	7579760	163535307	7159	15310											
DSP	1832	broad.mit.edu	37	chr6	7583719	7583719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgacagtgccatagctcGggacctcattgacttcgatg	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7583719	T	T	7583719	3	4	9	1	0	0	0	0	1	0	0	0	4821	1116	39	1	6318	1	DSP	6	7583719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3959	7583719	163531348	7160	15311											
DSP	1832	broad.mit.edu	37	chr6	7585022	7585022	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagaaataaccatcacGggatcagatggctccaccag	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7585022	T	T	7585022	2	4	9	1	0	0	0	0	0	0	0	1	4821	1103	39	1		1	DSP	6	7585022	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1303	7585022	163530045	7161	15312											
DSP	1832	broad.mit.edu	37	chr6	7585651	7585651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaaagaaaaatggctccCgtatgaggctggccagcgct	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7585651	A	A	7585651	3	1	9	1	0	0	0	0	1	0	0	0	4821	652	23	1	8250	1	DSP	6	7585651	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	629	7585651	163529416	7162	15313											
DSP	1832	broad.mit.edu	37	chr6	7585711	7585711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgggaggtcttgttgaccCggaagtgcatgggaggataa	16	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7585711	A	A	7585711	3	1	9	1	0	0	0	0	1	0	0	0	4821	652	23	1	8310	1	DSP	6	7585711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	7585711	163529356	7163	15314											
BMP6	654	broad.mit.edu	37	chr6	7861712	7861712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtttttgttggacaccCgtgtagtatgggcctcagaa	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7861712	A	A	7861712	3	1	9	1	0	0	0	0	1	0	0	0	1470	652	23	1	896	1	BMP6	6	7861712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	276001	7861712	163253355	7164	15315											
TXNDC5	81567	broad.mit.edu	37	chr6	7889067	7889067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccaaatcccgctttccCttgtactgatccacctggcc	6	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7889067	A	A	7889067	3	1	9	1	0	0	0	0	1	0	0	0	16925	680	24	2	480	2	TXNDC5	6	7889067	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27355	7889067	163226000	7165	15316											
TXNDC5	81567	broad.mit.edu	37	chr6	7899864	7899864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccagtgtctggaagtccCgaggaccctggtacttcaca	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7899864	A	A	7899864	3	1	9	1	0	0	0	0	1	0	0	0	16925	652	23	1	866	1	TXNDC5	6	7899864	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10797	7899864	163215203	7166	15317											
TFAP2A	7020	broad.mit.edu	37	chr6	10398638	10398638	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgtgggaggggcggggcGggaggagagcctcactttct	21	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10398638	T	T	10398638	1	4	9	0	1	0	0	0	0	0	0	0	15910	1131	39	1		1	TFAP2A	6	10398638	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	2498774	10398638	160716429	7167	15318											
TFAP2A	7020	broad.mit.edu	37	chr6	10398698	10398698	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttttggcgttgttgtcCgtgtggctgttggggttgtt	16	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10398698	A	A	10398698	2	1	9	1	0	0	0	0	0	0	0	1	15910	639	23	1		1	TFAP2A	6	10398698	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	10398698	160716369	7168	15319											
GCNT2	2651	broad.mit.edu	37	chr6	10530032	10530032	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaggacacctacagcccCgacgaacatttctgggtgac	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10530032	A	A	10530032	2	1	9	1	0	0	0	0	0	0	0	1	6363	639	23	1		1	GCNT2	6	10530032	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	131334	10530032	160585035	7169	15320											
GCNT2	2651	broad.mit.edu	37	chr6	10586771	10586771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcgcctctgaggttccCtggaagtacgtcatcaacac	9	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10586771	A	A	10586771	1	1	9	0	1	0	0	0	0	0	0	0	6363	668	24	2		2	GCNT2	6	10586771	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56739	10586771	160528296	7170	15321											
PAK1IP1	55003	broad.mit.edu	37	chr6	10695281	10695281	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgctgtacacccggagccCgaggcttgcggcgaccacga	13	15	0	0	rs112998972	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10695281	A	A	10695281	2	1	9	1	0	0	0	0	0	0	0	1	11494	639	23	1		1	PAK1IP1	6	10695281	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	108510	10695281	160419786	7171	15322											
PAK1IP1	55003	broad.mit.edu	37	chr6	10697604	10697604	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatgctcacactgcctcCttgtcagcagtagctgtaaa	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10697604	A	A	10697604	2	1	9	1	0	0	0	0	0	0	0	1	11494	668	24	2		2	PAK1IP1	6	10697604	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2323	10697604	160417463	7172	15323											
TMEM14C	51522	broad.mit.edu	37	chr6	10725246	10725246	+	Missense_Mutation	SNP	G	T	T													cagcactggttgcttctggtGggatcattggctatgtaaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10725246	T	T	10725246	3	4	9	1	0	0	0	0	1	0	0	0	16188	1348	47	2	79	2	TMEM14C	6	10725246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27642	10725246	160389821	7173	15324	96	2									
TMEM14C	51522	broad.mit.edu	37	chr6	10725255	10725255	+	Missense_Mutation	SNP	G	T	T													ttgcttctggtgggatcattGgctatgtaaaagcaggtagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10725255	T	T	10725255	3	4	9	1	0	0	0	0	1	0	0	0	16188	1348	47	2	88	2	TMEM14C	6	10725255	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	10725255	160389812	7174	15325	96	2									
TMEM14C	51522	broad.mit.edu	37	chr6	10725317	10725317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacatcttcacgttgtccCagtgaaatgtgaatgcccgt	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10725317	A	A	10725317	1	1	9	0	1	0	0	0	0	0	0	0	16188	609	21	2		2	TMEM14C	6	10725317	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	10725317	160389750	7175	15326											
TMEM14B	81853	broad.mit.edu	37	chr6	10749854	10749854	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacttctcttgtgttttcaGagtgcctttgcattggtttg	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10749854	T	T	10749854	5	4	9	1	0	0	0	0	0	0	1	0	16187	956	33	3	29	3	TMEM14B	6	10749854	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	24537	10749854	160365213	7176	15327											
TMEM14B	81853	broad.mit.edu	37	chr6	10749907	10749907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcactggttgtttctggtGggatcgttggctatgtaaaa	13	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10749907	T	T	10749907	3	4	9	1	0	0	0	0	1	0	0	0	16187	1348	47	2	82	2	TMEM14B	6	10749907	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	10749907	160365160	7177	15328											
MAK	4117	broad.mit.edu	37	chr6	10796256	10796256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtttttgacgatgctcGggaatagcgtttgtggcggt	15	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10796256	T	T	10796256	3	4	9	1	0	0	0	0	1	0	0	0	9289	1116	39	1	777	1	MAK	6	10796256	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46349	10796256	160318811	7178	15329											
MAK	4117	broad.mit.edu	37	chr6	10809163	10809163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttttctggtttcatgtccCtatgaaaaaagccttgatga	8	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10809163	A	A	10809163	3	1	9	1	0	0	0	0	1	0	0	0	9289	681	24	2	1536	2	MAK	6	10809163	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12907	10809163	160305904	7179	15330											
GCM2	9247	broad.mit.edu	37	chr6	10876731	10876731	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttggttacggggtatcCgctgtgccctcgacaaggaa	13	9	0	0	rs146812948		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10876731	A	A	10876731	4	1	9	1	0	0	0	0	0	1	0	0	6360	661	23	1	1129	1	GCM2	6	10876731	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67568	10876731	160238336	7180	15331											
GCM2	9247	broad.mit.edu	37	chr6	10877646	10877647	+	Intron	DNP	GG	TT	TT													ctggaagagtgcagaaggaaGggtggtcagtctatccagtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10877647	TT	TT	10877646	1	4	9	0	1	0	0	0	0	0	0	0	6360	1015	35	2		2	GCM2	6	10877646	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	915	10877646	160237421	7181	15332											
SYCP2L	221711	broad.mit.edu	37	chr6	10926643	10926643	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaagacagggagagtccCagtggccttgaaagagaaac	13	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10926643	A	A	10926643	2	1	9	1	0	0	0	0	0	0	0	1	15552	581	21	2		2	SYCP2L	6	10926643	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48997	10926643	160188424	7182	15333											
SYCP2L	221711	broad.mit.edu	37	chr6	10955410	10955410	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaagaagaggttgctccGggatcccctttctcaataac	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10955410	T	T	10955410	2	4	9	1	0	0	0	0	0	0	0	1	15552	1103	39	1		1	SYCP2L	6	10955410	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28767	10955410	160159657	7183	15334											
ERVFRDE1	405754	broad.mit.edu	37	chr6	11105334	11105334	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgataggaaatatgtaattcCgcctctatgcttgtccattc	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11105334	A	A	11105334	2	1	9	1	0	0	0	0	0	0	0	1	5288	639	23	1		1	ERVFRDE1	6	11105334	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	149924	11105334	160009733	7184	15335											
NEDD9	4739	broad.mit.edu	37	chr6	11192626	11192626	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaggttttatctctccCactggaactgaaaacacagg	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11192626	A	A	11192626	2	1	9	1	0	0	0	0	0	0	0	1	10408	581	21	2		2	NEDD9	6	11192626	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87292	11192626	159922441	7185	15336											
NEDD9	4739	broad.mit.edu	37	chr6	11213669	11213669	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttggtagatggtgtctcGgggagcagcctgtgggtttg	17	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11213669	T	T	11213669	2	4	9	1	0	0	0	0	0	0	0	1	10408	1124	39	1		1	NEDD9	6	11213669	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21043	11213669	159901398	7186	15337											
NEDD9	4739	broad.mit.edu	37	chr6	11233593	11233593	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagggcctcagagttgcGggtcacacatattgagcgac	12	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11233593	T	T	11233593	1	4	9	0	1	0	0	0	0	0	0	0	10408	1131	39	1		1	NEDD9	6	11233593	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	19924	11233593	159881474	7187	15338											
TMEM170B	100113407	broad.mit.edu	37	chr6	11565905	11565905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttttcctttcagagatgtGgtactggatcttcctctggg	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11565905	T	T	11565905	3	4	9	1	0	0	0	0	1	0	0	0	16210	1357	47	2	110	2	TMEM170B	6	11565905	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	332312	11565905	159549162	7188	15339											
TMEM170B	100113407	broad.mit.edu	37	chr6	11575782	11575782	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctccttttcaaggatcctCgctacactttgaggtttctg	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11575782	A	A	11575782	2	1	9	1	0	0	0	0	0	0	0	1	16210	871	31	3		3	TMEM170B	6	11575782	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9877	11575782	159539285	7189	15340											
C6orf105	84830	broad.mit.edu	37	chr6	11778902	11778902	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagattttgggtttcacctCgtcttttccttcctgtgaga	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11778902	A	A	11778902	4	1	9	1	0	0	0	0	0	1	0	0	2341	893	31	3	683	3	C6orf105	6	11778902	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	203120	11778902	159336165	7190	15341											
HIVEP1	3096	broad.mit.edu	37	chr6	12120225	12120225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaaataccaaaatcccCactgagaaatcctcttcagg	5	11	2	1	rs12014		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12120225	A	A	12120225	3	1	9	1	0	0	0	0	1	0	0	0	7253	594	21	2	207	2	HIVEP1	6	12120225	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	341323	12120225	158994842	7191	15342											
HIVEP1	3096	broad.mit.edu	37	chr6	12120301	12120301	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgttcttcatagtgcttcGgagtctcacaagaaacagaa	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12120301	T	T	12120301	2	4	9	1	0	0	0	0	0	0	0	1	7253	1103	39	1		1	HIVEP1	6	12120301	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76	12120301	158994766	7192	15343											
HIVEP1	3096	broad.mit.edu	37	chr6	12120821	12120821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtacctcatacacagtcCatatgtctgctgctcagaag	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12120821	A	A	12120821	3	1	9	1	0	0	0	0	1	0	0	0	7253	594	21	2	803	2	HIVEP1	6	12120821	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	520	12120821	158994246	7193	15344											
HIVEP1	3096	broad.mit.edu	37	chr6	12164360	12164360	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggttacctacagtccagcGggaaaatgcaaaaaaagttc	11	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12164360	T	T	12164360	3	4	9	1	0	0	0	0	1	0	0	0	7253	1116	39	1	7853	1	HIVEP1	6	12164360	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43539	12164360	158950707	7194	15345											
EDN1	1906	broad.mit.edu	37	chr6	12296198	12296198	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcttgctttattaggtcGgagaccatgagaaacagcgt	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12296198	T	T	12296198	2	4	9	1	0	0	0	0	0	0	0	1	4956	1103	39	1		1	EDN1	6	12296198	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131838	12296198	158818869	7195	15346											
PHACTR1	221692	broad.mit.edu	37	chr6	13160542	13160542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggattggtctgtcatcccCgggtcaaagagtcatgcgtg	14	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13160542	A	A	13160542	1	1	9	0	1	0	0	0	0	0	0	0	11904	667	23	1		1	PHACTR1	6	13160542	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	864344	13160542	157954525	7196	15347											
PHACTR1	221692	broad.mit.edu	37	chr6	13273174	13273174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactaagcccatggcaatccCtgatgttttgtggcggcttt	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13273174	A	A	13273174	1	1	9	0	1	0	0	0	0	0	0	0	11904	696	24	2		2	PHACTR1	6	13273174	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	112632	13273174	157841893	7197	15348											
PHACTR1	221692	broad.mit.edu	37	chr6	13283705	13283705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaagaaagatcctcatcCgcttcagtgactacgtggag	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13283705	A	A	13283705	3	1	9	1	0	0	0	0	1	0	0	0	11904	652	23	1	1603	1	PHACTR1	6	13283705	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10531	13283705	157831362	7198	15349											
TBC1D7	51256	broad.mit.edu	37	chr6	13316856	13316856	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattggttcacaaagcgtcGggtgatccagtaacagtcga	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13316856	T	T	13316856	2	4	9	1	0	0	0	0	0	0	0	1	15746	1124	39	1		1	TBC1D7	6	13316856	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33151	13316856	157798211	7199	15350											
TBC1D7	51256	broad.mit.edu	37	chr6	13321193	13321193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactccagctgatacatgcGgagatagacttcagcctgag	11	10	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13321193	T	T	13321193	3	4	9	1	0	0	0	0	1	0	0	0	15746	1116	39	1	573	1	TBC1D7	6	13321193	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4337	13321193	157793874	7200	15351											
TBC1D7	51256	broad.mit.edu	37	chr6	13325364	13325364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgcacggtacatggacGggagagggaacctctgacta	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13325364	T	T	13325364	3	4	9	1	0	0	0	0	1	0	0	0	15746	1116	39	1	750	1	TBC1D7	6	13325364	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4171	13325364	157789703	7201	15352											
SIRT5	23408	broad.mit.edu	37	chr6	13611963	13611963	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataagtgcttgctgaagtaGggcattcattttgctaacct	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13611963	C	C	13611963	1	2	9	0	1	0	0	0	0	0	0	0	14454	1015	35	4		4	SIRT5	6	13611963	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	286599	13611963	157503104	7202	15353											
RANBP9	10048	broad.mit.edu	37	chr6	13625932	13625932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaggttctctctgaatcGggtcaagctgatttccaact	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13625932	T	T	13625932	3	4	9	1	0	0	0	0	1	0	0	0	13140	1116	39	1	185	1	RANBP9	6	13625932	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13969	13625932	157489135	7203	15354											
RANBP9	10048	broad.mit.edu	37	chr6	13644861	13644861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattttggttctccactccCgcatatagtcttctatatca	6	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13644861	A	A	13644861	3	1	9	1	0	0	0	0	1	0	0	0	13140	652	23	1	1197	1	RANBP9	6	13644861	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18929	13644861	157470206	7204	15355											
CCDC90A	63933	broad.mit.edu	37	chr6	13800551	13800551	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tataattacaaaccagccaaCaaacaggaaagtgaatctta	5	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13800551	G	G	13800551	1	3	9	0	1	0	0	0	0	0	0	0	2896	493	17	4		4	CCDC90A	6	13800551	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	155690	13800551	157314516	7205	15356											
RNF182	221687	broad.mit.edu	37	chr6	13978131	13978131	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattggacacacattgccCtgtttgagtgtgaagttaga	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13978131	A	A	13978131	1	1	9	0	1	0	0	0	0	0	0	0	13577	696	24	2		2	RNF182	6	13978131	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	177580	13978131	157136936	7206	15357											
JARID2	3720	broad.mit.edu	37	chr6	15512522	15512522	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgtcgtctgcttcccGggatcctttgtgtccaaagt	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15512522	T	T	15512522	2	4	9	1	0	0	0	0	0	0	0	1	8015	1103	39	1		1	JARID2	6	15512522	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1534391	15512522	155602545	7207	15358											
MYLIP	29116	broad.mit.edu	37	chr6	16143393	16143393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcagaaactgctcattGgggttggacctgaaggaatc	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16143393	T	T	16143393	3	4	9	1	0	0	0	0	1	0	0	0	10149	1348	47	2	621	2	MYLIP	6	16143393	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	630871	16143393	154971674	7208	15359											
MYLIP	29116	broad.mit.edu	37	chr6	16145414	16145414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagctgccagcagaccCgggtgctgcaggagaagcta	14	13	1	2	rs141183183		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16145414	A	A	16145414	2	1	9	1	0	0	0	0	0	0	0	1	10149	643	23	1		1	MYLIP	6	16145414	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2021	16145414	154969653	7209	15360											
GMPR	2766	broad.mit.edu	37	chr6	16290677	16290677	+	Intron	SNP	C	A	A													ctgctactcgctttcatcccCaccgttggcatttaggagct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16290677	A	A	16290677	1	1	9	0	1	0	0	0	0	0	0	0	6560	609	21	2		2	GMPR	6	16290677	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145263	16290677	154824390	7210	15361	97	2									
GMPR	2766	broad.mit.edu	37	chr6	16290680	16290680	+	Intron	SNP	C	A	A													ctactcgctttcatccccacCgttggcatttaggagctgga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16290680	A	A	16290680	1	1	9	0	1	0	0	0	0	0	0	0	6560	667	23	1		1	GMPR	6	16290680	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3	16290680	154824387	7211	15362	97	2									
ATXN1	6310	broad.mit.edu	37	chr6	16326847	16326847	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcagcgtagggggagcCgccgccggggaggccacgga	22	11	0	0	rs146373716	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16326847	A	A	16326847	2	1	9	1	0	0	0	0	0	0	0	1	1213	639	23	1		1	ATXN1	6	16326847	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36167	16326847	154788220	7212	15363											
ATXN1	6310	broad.mit.edu	37	chr6	16327406	16327406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaccatcacagaggccCggacccccgaaggatcacga	12	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16327406	A	A	16327406	3	1	9	1	0	0	0	0	1	0	0	0	1213	652	23	1	1319	1	ATXN1	6	16327406	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	559	16327406	154787661	7213	15364											
RBM24	221662	broad.mit.edu	37	chr6	17284941	17284941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttatacaaagacctttcGggtaagttgattaatcaggc	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17284941	T	T	17284941	3	4	9	1	0	0	0	0	1	0	0	0	13232	1130	39	1	389	1	RBM24	6	17284941	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	957535	17284941	153830126	7214	15365											
NUP153	9972	broad.mit.edu	37	chr6	17637840	17637840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtctgtaactttgttctGgagtagacatgtatcacact	9	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17637840	T	T	17637840	3	4	9	1	0	0	0	0	1	0	0	0	10850	1357	47	2	2447	2	NUP153	6	17637840	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	352899	17637840	153477227	7215	15366											
KIF13A	63971	broad.mit.edu	37	chr6	17788051	17788051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgttcatccaggtattctCgtcgtttaatgagtgcatct	8	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17788051	A	A	17788051	3	1	9	1	0	0	0	0	1	0	0	0	8344	884	31	3	2177	3	KIF13A	6	17788051	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	150211	17788051	153327016	7216	15367											
KIF13A	63971	broad.mit.edu	37	chr6	17800166	17800166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatttatatgagcctccCatcactgtcctctcacccga	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17800166	A	A	17800166	1	1	9	0	1	0	0	0	0	0	0	0	8344	609	21	2		2	KIF13A	6	17800166	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12115	17800166	153314901	7217	15368											
KIF13A	63971	broad.mit.edu	37	chr6	17800206	17800206	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgtcagctttttgactcGgtgaatgatttccccgctgc	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17800206	T	T	17800206	2	4	9	1	0	0	0	0	0	0	0	1	8344	1124	39	1		1	KIF13A	6	17800206	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40	17800206	153314861	7218	15369											
KIF13A	63971	broad.mit.edu	37	chr6	17826103	17826103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccaggtcatgctctggcGggcccgtttctttttcaaag	10	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17826103	T	T	17826103	3	4	9	1	0	0	0	0	1	0	0	0	8344	1116	39	1	3856	1	KIF13A	6	17826103	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25897	17826103	153288964	7219	15370											
TPMT	7172	broad.mit.edu	37	chr6	18149318	18149318	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttctgtacctcagtatccGagtactcttcaatgtcaagt	6	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18149318	T	T	18149318	4	4	9	1	0	0	0	0	0	1	0	0	16533	1059	37	3	728	3	TPMT	6	18149318	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	323215	18149318	152965749	7220	15371											
KDM1B	221656	broad.mit.edu	37	chr6	18207608	18207608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttacactgctgtgtccCcaacctctcttgtttcccag	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18207608	A	A	18207608	1	1	9	0	1	0	0	0	0	0	0	0	8193	638	22	2		2	KDM1B	6	18207608	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58290	18207608	152907459	7221	15372											
KDM1B	221656	broad.mit.edu	37	chr6	18212777	18212777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccattcagtttaatccacCgttgtcagagaagaagatga	9	8	2	4	rs150757038	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18212777	A	A	18212777	3	1	9	1	0	0	0	0	1	0	0	0	8193	652	23	1	1275	1	KDM1B	6	18212777	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5169	18212777	152902290	7222	15373											
KDM1B	221656	broad.mit.edu	37	chr6	18213933	18213933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggacagtaaagtacaagGggctgacttttttggtcacg	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18213933	T	T	18213933	3	4	9	1	0	0	0	0	1	0	0	0	8193	1232	43	2	1384	2	KDM1B	6	18213933	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1156	18213933	152901134	7223	15374											
KDM1B	221656	broad.mit.edu	37	chr6	18213977	18213977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagtgccagcaagcgaGggctttttgccgtgttctat	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18213977	T	T	18213977	3	4	9	1	0	0	0	0	1	0	0	0	8193	1000	35	2	1428	2	KDM1B	6	18213977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	18213977	152901090	7224	15375											
DEK	7913	broad.mit.edu	37	chr6	18256724	18256724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattaatggtatttattaccCagtaatgtacacaagaataa	5	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18256724	A	A	18256724	1	1	9	0	1	0	0	0	0	0	0	0	4464	609	21	2		2	DEK	6	18256724	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42747	18256724	152858343	7225	15376											
DEK	7913	broad.mit.edu	37	chr6	18258176	18258176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtttaaagtgtaaaaaGgtcttacagtgcctggcctg	12	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18258176	T	T	18258176	1	4	9	0	1	0	0	0	0	0	0	0	4464	1015	35	2		2	DEK	6	18258176	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1452	18258176	152856891	7226	15377											
RNF144B	255488	broad.mit.edu	37	chr6	18457456	18457456	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtgtgccctgttgcctcGagtgacccaggacagcctgt	12	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18457456	T	T	18457456	2	4	9	1	0	0	0	0	0	0	0	1	13557	1045	37	3		3	RNF144B	6	18457456	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	199280	18457456	152657611	7227	15378											
CDKAL1	54901	broad.mit.edu	37	chr6	20546688	20546688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagaaaggatgttgtccCgaaggtacgaaggcgaaata	13	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20546688	A	A	20546688	3	1	9	1	0	0	0	0	1	0	0	0	3182	652	23	1	109	1	CDKAL1	6	20546688	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2089232	20546688	150568379	7228	15379											
CDKAL1	54901	broad.mit.edu	37	chr6	21065449	21065449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaaaatggaacaagttcCagcacaagtggtaagatctt	9	7	1	1	rs77152992	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21065449	A	A	21065449	3	1	9	1	0	0	0	0	1	0	0	0	3182	594	21	2	1264	2	CDKAL1	6	21065449	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	518761	21065449	150049618	7229	15380											
DCDC2	51473	broad.mit.edu	37	chr6	24301956	24301956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatacctgtgaacagcccCgctcctcagagtgatttttt	8	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24301956	A	A	24301956	3	1	9	1	0	0	0	0	1	0	0	0	4318	652	23	1	914	1	DCDC2	6	24301956	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3236507	24301956	146813111	7230	15381											
DCDC2	51473	broad.mit.edu	37	chr6	24302003	24302003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttgtagtacatgatccCactgattcaaggtttttctg	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24302003	A	A	24302003	3	1	9	1	0	0	0	0	1	0	0	0	4318	595	21	2	961	2	DCDC2	6	24302003	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	24302003	146813064	7231	15382											
MRS2	57380	broad.mit.edu	37	chr6	24412577	24412577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcaactcgttacataccCtttaccttttgagtttagag	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24412577	A	A	24412577	3	1	9	1	0	0	0	0	1	0	0	0	9945	681	24	2	560	2	MRS2	6	24412577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110574	24412577	146702490	7232	15383											
GPLD1	2822	broad.mit.edu	37	chr6	24445915	24445915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtgagaaaacttccttGgagtgtccactctcctgtgt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24445915	T	T	24445915	1	4	9	0	1	0	0	0	0	0	0	0	6679	1363	47	2		2	GPLD1	6	24445915	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	33338	24445915	146669152	7233	15384											
KIAA0319	9856	broad.mit.edu	37	chr6	24554733	24554733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaacacacttagtgtaGggtctctatttcccaggaat	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24554733	T	T	24554733	1	4	9	0	1	0	0	0	0	0	0	0	8238	1015	35	2		2	KIAA0319	6	24554733	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	108818	24554733	146560334	7234	15385											
KIAA0319	9856	broad.mit.edu	37	chr6	24576703	24576703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaaagtgatggagttttGgggcaaagttatggtgtgat	14	2	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24576703	T	T	24576703	3	4	9	1	0	0	0	0	1	0	0	0	8238	1357	47	2	1639	2	KIAA0319	6	24576703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21970	24576703	146538364	7235	15386											
KIAA0319	9856	broad.mit.edu	37	chr6	24576806	24576806	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagagttagtggctccgtcCgagtctgtaacagtcaacct	11	10	2	1	rs9918327	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24576806	A	A	24576806	2	1	9	1	0	0	0	0	0	0	0	1	8238	639	23	1		1	KIAA0319	6	24576806	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	24576806	146538261	7236	15387											
KIAA0319	9856	broad.mit.edu	37	chr6	24578420	24578420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcttctatgaagggccCgtttatttcttcccaatgat	6	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24578420	A	A	24578420	3	1	9	1	0	0	0	0	1	0	0	0	8238	652	23	1	1847	1	KIAA0319	6	24578420	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1614	24578420	146536647	7237	15388											
GMNN	51053	broad.mit.edu	37	chr6	24784711	24784711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggacaatgaaattgccCgcctgaaaaaggagaataaa	9	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24784711	A	A	24784711	3	1	9	1	0	0	0	0	1	0	0	0	6557	652	23	1	415	1	GMNN	6	24784711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	206291	24784711	146330356	7238	15389											
FAM65B	9750	broad.mit.edu	37	chr6	24843408	24843408	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgcttctgcaacatcattCtcaaggaacaggtgctcagc	9	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24843408	T	T	24843408	2	4	9	1	0	0	0	0	0	0	0	1	5651	912	32	4		4	FAM65B	6	24843408	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58697	24843408	146271659	7239	15390											
FAM65B	9750	broad.mit.edu	37	chr6	24849970	24849970	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtccatgcaccagctttGagtagcactagccggtatca	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24849970	T	T	24849970	1	4	9	0	1	0	0	0	0	0	0	0	5651	1305	45	3		3	FAM65B	6	24849970	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6562	24849970	146265097	7240	15391											
FAM65B	9750	broad.mit.edu	37	chr6	24873831	24873831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttttctctgaccccttGggtctttccttaaagtacat	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24873831	T	T	24873831	1	4	9	0	1	0	0	0	0	0	0	0	5651	1363	47	2		2	FAM65B	6	24873831	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23861	24873831	146241236	7241	15392											
LRRC16A	55604	broad.mit.edu	37	chr6	25452380	25452380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcacagcctgggactacGgaagatggtgaagcaggctc	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25452380	T	T	25452380	1	4	9	0	1	0	0	0	0	0	0	0	9058	1131	39	1		1	LRRC16A	6	25452380	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	578549	25452380	145662687	7242	15393											
LRRC16A	55604	broad.mit.edu	37	chr6	25452426	25452426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtagttgtggctgatGggcctaaagcctccagttct	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25452426	T	T	25452426	1	4	9	0	1	0	0	0	0	0	0	0	9058	1363	47	2		2	LRRC16A	6	25452426	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46	25452426	145662641	7243	15394											
LRRC16A	55604	broad.mit.edu	37	chr6	25479279	25479279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacctgtgctctgacatcCacaatgttccaatgtgtatg	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25479279	A	A	25479279	1	1	9	0	1	0	0	0	0	0	0	0	9058	609	21	2		2	LRRC16A	6	25479279	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26853	25479279	145635788	7244	15395											
LRRC16A	55604	broad.mit.edu	37	chr6	25488753	25488753	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgccaatccattgacCgcctctacccttgtccacct	5	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25488753	A	A	25488753	2	1	9	1	0	0	0	0	0	0	0	1	9058	639	23	1		1	LRRC16A	6	25488753	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9474	25488753	145626314	7245	15396											
LRRC16A	55604	broad.mit.edu	37	chr6	25517586	25517586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaacaggactgtaatatGggacaagaacaacatcactg	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25517586	T	T	25517586	3	4	9	1	0	0	0	0	1	0	0	0	9058	1357	47	2	1903	2	LRRC16A	6	25517586	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28833	25517586	145597481	7246	15397											
LRRC16A	55604	broad.mit.edu	37	chr6	25610305	25610305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagactctccatctagccCgaaagttgcccttcttccac	5	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25610305	A	A	25610305	3	1	9	1	0	0	0	0	1	0	0	0	9058	652	23	1	4017	1	LRRC16A	6	25610305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92719	25610305	145504762	7247	15398											
LRRC16A	55604	broad.mit.edu	37	chr6	25619776	25619776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaaatctaatgactccGgggaagaagcagaaaaagag	12	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25619776	T	T	25619776	3	4	9	1	0	0	0	0	1	0	0	0	9058	1116	39	1	4227	1	LRRC16A	6	25619776	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9471	25619776	145495291	7248	15399											
SCGN	10590	broad.mit.edu	37	chr6	25669793	25669793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatatcagctgctgagctcCgcgtgagtgtcactgggtga	13	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25669793	A	A	25669793	3	1	9	1	0	0	0	0	1	0	0	0	14016	652	23	1	409	1	SCGN	6	25669793	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50017	25669793	145445274	7249	15400											
HIST1H2AA	221613	broad.mit.edu	37	chr6	25727107	25727107	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaaccctggaaaagaacCgtgtaacgctgcagaagtgt	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25727107	A	A	25727107	1	1	9	0	1	0	0	0	0	0	0	0	7195	667	23	1		1	HIST1H2AA	6	25727107	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	57314	25727107	145387960	7250	15401											
SLC17A4	10050	broad.mit.edu	37	chr6	25776845	25776845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggatcctgtctgccttgcCgtttgttgttggatgtatct	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25776845	A	A	25776845	3	1	9	1	0	0	0	0	1	0	0	0	14532	652	23	1	1040	1	SLC17A4	6	25776845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49738	25776845	145338222	7251	15402											
SLC17A1	6568	broad.mit.edu	37	chr6	25811664	25811664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttataaacactccaccCaagcaaaagctgcctgttgc	5	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25811664	A	A	25811664	3	1	9	1	0	0	0	0	1	0	0	0	14529	593	21	2	275	2	SLC17A1	6	25811664	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34819	25811664	145303403	7252	15403											
SLC17A1	6568	broad.mit.edu	37	chr6	25819808	25819808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgacatatatttcaaactGggctgttgcaactatcccct	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25819808	T	T	25819808	3	4	9	1	0	0	0	0	1	0	0	0	14529	1357	47	2	975	2	SLC17A1	6	25819808	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8144	25819808	145295259	7253	15404											
SLC17A2	10246	broad.mit.edu	37	chr6	25913553	25913553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactttatgtcctcagaggcGggtaagggtcctctctttgg	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25913553	T	T	25913553	3	4	9	1	0	0	0	0	1	0	0	0	14530	1103	39	1	33	1	SLC17A2	6	25913553	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	93745	25913553	145201514	7254	15405											
HIST1H2AB	8335	broad.mit.edu	37	chr6	26033596	26033596	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcgcgggccgcattgccCgccagctccaggatctcggc	13	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26033596	A	A	26033596	2	1	9	1	0	0	0	0	0	0	0	1	7196	639	23	1		1	HIST1H2AB	6	26033596	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	120043	26033596	145081471	7255	15406											
HIST1H2BB	3018	broad.mit.edu	37	chr6	26043706	26043706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaaggaattcatgatcccCatggccttggatgagatgcc	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26043706	A	A	26043706	3	1	9	1	0	0	0	0	1	0	0	0	7208	594	21	2	204	2	HIST1H2BB	6	26043706	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10110	26043706	145071361	7256	15407											
HIST1H2BB	3018	broad.mit.edu	37	chr6	26043733	26043733	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggatgagatgccggtgtcGgggtggacctgcttcagaac	16	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26043733	T	T	26043733	2	4	9	1	0	0	0	0	0	0	0	1	7208	1103	39	1		1	HIST1H2BB	6	26043733	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	26043733	145071334	7257	15408											
HFE	3077	broad.mit.edu	37	chr6	26091097	26091097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgcactacctcttcatGggtgcctcagagcaggacct	9	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26091097	T	T	26091097	3	4	9	1	0	0	0	0	1	0	0	0	7148	1348	47	2	111	2	HFE	6	26091097	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47364	26091097	145023970	7258	15409											
HFE	3077	broad.mit.edu	37	chr6	26091203	26091203	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtcgccgtgtggagcccCgaactccatgggtttccagt	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26091203	A	A	26091203	2	1	9	1	0	0	0	0	0	0	0	1	7148	644	23	1		1	HFE	6	26091203	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	26091203	145023864	7259	15410											
HIST1H2BC	8347	broad.mit.edu	37	chr6	26123953	26123953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaaagaattcatgatgccCatggccttggaagagatgcc	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26123953	A	A	26123953	3	1	9	1	0	0	0	0	1	0	0	0	7209	594	21	2	204	2	HIST1H2BC	6	26123953	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32750	26123953	144991114	7260	15411											
HIST1H2BC	8347	broad.mit.edu	37	chr6	26123980	26123980	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaagagatgccagtgtcGggatggacctgtttcagcac	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26123980	T	T	26123980	2	4	9	1	0	0	0	0	0	0	0	1	7209	1103	39	1		1	HIST1H2BC	6	26123980	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	26123980	144991087	7261	15412											
HIST1H2BE	8344	broad.mit.edu	37	chr6	26184176	26184176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgaaacaggtccacccCgacaccggcatctcctctaa	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26184176	A	A	26184176	2	1	9	1	0	0	0	0	0	0	0	1	7211	639	23	1		1	HIST1H2BE	6	26184176	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60196	26184176	144930891	7262	15413											
HIST1H2BF	8343	broad.mit.edu	37	chr6	26199939	26199939	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctaaagcaggtccacccCgacaccggcatctcatccaa	8	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26199939	A	A	26199939	2	1	9	1	0	0	0	0	0	0	0	1	7212	639	23	1		1	HIST1H2BF	6	26199939	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15763	26199939	144915128	7263	15414											
HIST1H2BG	8339	broad.mit.edu	37	chr6	26216634	26216634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttgtagtgggccagacGggaagcctcgcctgcgatgc	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26216634	T	T	26216634	3	4	9	1	0	0	0	0	1	0	0	0	7213	1116	39	1	146	1	HIST1H2BG	6	26216634	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16695	26216634	144898433	7264	15415											
HIST1H2BG	8339	broad.mit.edu	37	chr6	26216719	26216719	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggatgagatgccagtatcGgggtgaacctgttttagcac	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26216719	T	T	26216719	2	4	9	1	0	0	0	0	0	0	0	1	7213	1103	39	1		1	HIST1H2BG	6	26216719	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85	26216719	144898348	7265	15416											
HIST1H4F	8361	broad.mit.edu	37	chr6	26240856	26240856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctggagaatgtgatacGggacgccgtaacctacacgg	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26240856	T	T	26240856	3	4	9	1	0	0	0	0	1	0	0	0	7237	1116	39	1	205	1	HIST1H4F	6	26240856	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24137	26240856	144874211	7266	15417											
HIST1H2BI	8346	broad.mit.edu	37	chr6	26273320	26273320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgcaaggagagctattcCgtgtacgtgtacaaggtgct	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26273320	A	A	26273320	2	1	9	1	0	0	0	0	0	0	0	1	7215	639	23	1		1	HIST1H2BI	6	26273320	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32464	26273320	144841747	7267	15418											
BTN3A2	11118	broad.mit.edu	37	chr6	26370759	26370759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcatgagaggcggctccGgggagggtgtatcctgcatc	16	9	1	2	rs144289111		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26370759	T	T	26370759	3	4	9	1	0	0	0	0	1	0	0	0	1573	1116	39	1	653	1	BTN3A2	6	26370759	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97439	26370759	144744308	7268	15419											
BTN3A2	11118	broad.mit.edu	37	chr6	26370792	26370792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcatcatcagaaattccCtcctcggcctggaaaagaca	7	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26370792	A	A	26370792	3	1	9	1	0	0	0	0	1	0	0	0	1573	681	24	2	686	2	BTN3A2	6	26370792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	26370792	144744275	7269	15420											
BTN3A2	11118	broad.mit.edu	37	chr6	26373570	26373570	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagacatgtcttcctatcctCgctttgagcaccttgatgac	7	13	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26373570	A	A	26373570	1	1	9	0	1	0	0	0	0	0	0	0	1573	899	31	3		3	BTN3A2	6	26373570	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2778	26373570	144741497	7270	15421											
BTN2A2	10385	broad.mit.edu	37	chr6	26385325	26385325	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacgctgccatctgtcaccCgagaaaaatgctgaggacat	9	11	2	2	rs150302333	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26385325	A	A	26385325	2	1	9	1	0	0	0	0	0	0	0	1	1571	639	23	1		1	BTN2A2	6	26385325	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11755	26385325	144729742	7271	15422											
BTN2A2	10385	broad.mit.edu	37	chr6	26390288	26390288	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctagctgtcatcctgacCgcatctccctggatggtgtc	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26390288	A	A	26390288	2	1	9	1	0	0	0	0	0	0	0	1	1571	639	23	1		1	BTN2A2	6	26390288	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4963	26390288	144724779	7272	15423											
BTN3A1	11119	broad.mit.edu	37	chr6	26408028	26408028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaagggagagaacatccCgactgtggaagcacctgtgg	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26408028	A	A	26408028	3	1	9	1	0	0	0	0	1	0	0	0	1572	652	23	1	573	1	BTN3A1	6	26408028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17740	26408028	144707039	7273	15424											
BTN2A1	11120	broad.mit.edu	37	chr6	26459845	26459845	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccggtctcagttctccccCgcagtgtttgtgtataaagg	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26459845	A	A	26459845	2	1	9	1	0	0	0	0	0	0	0	1	1570	639	23	1		1	BTN2A1	6	26459845	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51817	26459845	144655222	7274	15425											
BTN1A1	696	broad.mit.edu	37	chr6	26508763	26508763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccagacacagctcatccCcacctctttctttatgagga	6	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26508763	A	A	26508763	2	1	9	1	0	0	0	0	0	0	0	1	1569	610	22	2		2	BTN1A1	6	26508763	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48918	26508763	144606304	7275	15426											
ABT1	29777	broad.mit.edu	37	chr6	26598526	26598526	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacctggtcccacctcagcGagcacctcgcctttgagcgc	9	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26598526	T	T	26598526	4	4	9	1	0	0	0	0	0	1	0	0	101	1059	37	3	482	3	ABT1	6	26598526	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	89763	26598526	144516541	7276	15427											
HIST1H2BJ	8970	broad.mit.edu	37	chr6	27100292	27100292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttgtaatgcgccaggcGggaagcctcacctgcgatgc	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27100292	T	T	27100292	3	4	9	1	0	0	0	0	1	0	0	0	7216	1116	39	1	146	1	HIST1H2BJ	6	27100292	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	501766	27100292	144014775	7277	15428											
ZNF391	346157	broad.mit.edu	37	chr6	27368107	27368107	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaccaaagcatcaacacCaatcagactgtttccgaaga	6	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27368107	A	A	27368107	1	1	9	0	1	0	0	0	0	0	0	0	18006	609	21	2		2	ZNF391	6	27368107	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	267815	27368107	143746960	7278	15429											
ZNF184	7738	broad.mit.edu	37	chr6	27419415	27419415	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacatttattacactggtaGggtttttcttctgtgtgagt	9	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27419415	T	T	27419415	2	4	9	1	0	0	0	0	0	0	0	1	17877	987	35	2		2	ZNF184	6	27419415	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	51308	27419415	143695652	7279	15430											
HIST1H2BL	8340	broad.mit.edu	37	chr6	27775532	27775532	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaagagatgccggtgtcGgggtggacctgcttcagcac	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27775532	T	T	27775532	2	4	9	1	0	0	0	0	0	0	0	1	7218	1103	39	1		1	HIST1H2BL	6	27775532	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	356117	27775532	143339535	7280	15431											
HIST1H2BL	8340	broad.mit.edu	37	chr6	27775568	27775568	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccttgtacacgtacacGgagtagctctccttgcggct	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27775568	T	T	27775568	2	4	9	1	0	0	0	0	0	0	0	1	7218	1103	39	1		1	HIST1H2BL	6	27775568	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	27775568	143339499	7281	15432											
HIST1H2AJ	8331	broad.mit.edu	37	chr6	27782127	27782127	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatgcgcttttcaactcGgtctttacttagtcttgtgg	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27782127	T	T	27782127	1	4	9	0	1	0	0	0	0	0	0	0	7203	1131	39	1		1	HIST1H2AJ	6	27782127	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	6559	27782127	143332940	7282	15433											
HIST1H2BM	8342	broad.mit.edu	37	chr6	27783099	27783099	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgctcgaccatcacttcgaGggagatccagacggccgtgc	13	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27783099	C	C	27783099	3	2	9	1	0	0	0	0	1	0	0	0	7219	1000	35	4	280	4	HIST1H2BM	6	27783099	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	972	27783099	143331968	7283	15434											
HIST1H2BN	8341	broad.mit.edu	37	chr6	27806592	27806592	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgaagcaggtccacccCgacaccggtatctcgtccaa	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27806592	A	A	27806592	2	1	9	1	0	0	0	0	0	0	0	1	7220	639	23	1		1	HIST1H2BN	6	27806592	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23493	27806592	143308475	7284	15435											
HIST1H2AL	8332	broad.mit.edu	37	chr6	27833184	27833184	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcgccaaagccaagaccCgctcttctcgtgccggtctc	9	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27833184	A	A	27833184	3	1	9	1	0	0	0	0	1	0	0	0	7205	652	23	1	54	1	HIST1H2AL	6	27833184	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26592	27833184	143281883	7285	15436											
HIST1H1B	3009	broad.mit.edu	37	chr6	27834903	27834903	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcttaggcgtggccccCgcgggcttcttagctttagc	12	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27834903	A	A	27834903	2	1	9	1	0	0	0	0	0	0	0	1	7190	639	23	1		1	HIST1H1B	6	27834903	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1719	27834903	143280164	7286	15437											
HIST1H1B	3009	broad.mit.edu	37	chr6	27834959	27834959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttgggcttggcttcccCggaggccgccttcttgttga	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27834959	A	A	27834959	3	1	9	1	0	0	0	0	1	0	0	0	7190	652	23	1	335	1	HIST1H1B	6	27834959	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	27834959	143280108	7287	15438											
HIST1H1B	3009	broad.mit.edu	37	chr6	27835191	27835191	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctgagactgggggcccCgtcgctttgcgcttagcagc	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27835191	A	A	27835191	2	1	9	1	0	0	0	0	0	0	0	1	7190	639	23	1		1	HIST1H1B	6	27835191	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	232	27835191	143279876	7288	15439											
HIST1H3I	8354	broad.mit.edu	37	chr6	27839876	27839876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagtcctgtgcgatctccCgtaccaagcgctgaaaaggt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27839876	A	A	27839876	3	1	9	1	0	0	0	0	1	0	0	0	7230	652	23	1	196	1	HIST1H3I	6	27839876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4685	27839876	143275191	7289	15440											
ZNF165	7718	broad.mit.edu	37	chr6	28053430	28053430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaggcagttctgctacCaggattctcctggacctcgc	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28053430	A	A	28053430	3	1	9	1	0	0	0	0	1	0	0	0	17866	595	21	2	174	2	ZNF165	6	28053430	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	213554	28053430	143061637	7290	15441											
ZNF192	7745	broad.mit.edu	37	chr6	28116381	28116381	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggagacactaggacccCgagaagctctgatccaacta	9	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28116381	A	A	28116381	2	1	9	1	0	0	0	0	0	0	0	1	17882	644	23	1		1	ZNF192	6	28116381	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62951	28116381	142998686	7291	15442											
ZNF192	7745	broad.mit.edu	37	chr6	28121124	28121124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatcagtgtaatgtgtgtGgtaaagccttcagttacagg	11	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28121124	T	T	28121124	3	4	9	1	0	0	0	0	1	0	0	0	17882	1348	47	2	1084	2	ZNF192	6	28121124	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4743	28121124	142993943	7292	15443											
ZKSCAN4	387032	broad.mit.edu	37	chr6	28213080	28213080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattacatttataagacacGggagcctcagtattttccca	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28213080	T	T	28213080	2	4	9	1	0	0	0	0	0	0	0	1	17815	1103	39	1		1	ZKSCAN4	6	28213080	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91956	28213080	142901987	7293	15444											
PGBD1	84547	broad.mit.edu	37	chr6	28268548	28268548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcctattgctactgaaaGgacagttgcacatttgaaca	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28268548	T	T	28268548	3	4	9	1	0	0	0	0	1	0	0	0	11875	1000	35	2	939	2	PGBD1	6	28268548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55468	28268548	142846519	7294	15445											
PGBD1	84547	broad.mit.edu	37	chr6	28268649	28268649	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgcaggagacattaccCgaaaagggagaaaaaaagac	11	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28268649	A	A	28268649	2	1	9	1	0	0	0	0	0	0	0	1	11875	644	23	1		1	PGBD1	6	28268649	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	101	28268649	142846418	7295	15446											
ZNF323	64288	broad.mit.edu	37	chr6	28294053	28294053	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcaccagtgtggactcGgagatgctggaaaagccctg	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28294053	T	T	28294053	2	4	9	1	0	0	0	0	0	0	0	1	17969	1124	39	1		1	ZNF323	6	28294053	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25404	28294053	142821014	7296	15447											
ZNF323	64288	broad.mit.edu	37	chr6	28297162	28297162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctccggatggtgctccCgcacccaggcctggagctcc	11	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28297162	A	A	28297162	3	1	9	1	0	0	0	0	1	0	0	0	17969	652	23	1	933	1	ZNF323	6	28297162	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3109	28297162	142817905	7297	15448											
ZNF323	64288	broad.mit.edu	37	chr6	28297301	28297301	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccggctcagagcttctcGgggaccaggagtctcttggt	15	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28297301	T	T	28297301	2	4	9	1	0	0	0	0	0	0	0	1	17969	1124	39	1		1	ZNF323	6	28297301	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	139	28297301	142817766	7298	15449											
ZKSCAN3	80317	broad.mit.edu	37	chr6	28327468	28327468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagaagccggttttccCagtagcccagatctgggttc	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28327468	A	A	28327468	2	1	9	1	0	0	0	0	0	0	0	1	17814	581	21	2		2	ZKSCAN3	6	28327468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30167	28327468	142787599	7299	15450											
GPX6	257202	broad.mit.edu	37	chr6	28473603	28473603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaaccaaagttgttccCagcaagatacaaattaagac	7	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28473603	A	A	28473603	1	1	9	0	1	0	0	0	0	0	0	0	6810	609	21	2		2	GPX6	6	28473603	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	146135	28473603	142641464	7300	15451											
GPX5	2880	broad.mit.edu	37	chr6	28499465	28499465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccctgggcctctgtttcCttctctgtaaaatgggtaac	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28499465	A	A	28499465	1	1	9	0	1	0	0	0	0	0	0	0	6809	696	24	2		2	GPX5	6	28499465	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25862	28499465	142615602	7301	15452											
GPX5	2880	broad.mit.edu	37	chr6	28499569	28499569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagaactaaatgcactcCaggaggagctgaagccctat	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28499569	A	A	28499569	3	1	9	1	0	0	0	0	1	0	0	0	6809	595	21	2	266	2	GPX5	6	28499569	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	28499569	142615498	7302	15453											
GPX5	2880	broad.mit.edu	37	chr6	28501807	28501807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggaccctgtaaaggtcCatgacatccgttggaacttt	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28501807	A	A	28501807	3	1	9	1	0	0	0	0	1	0	0	0	6809	594	21	2	547	2	GPX5	6	28501807	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2238	28501807	142613260	7303	15454											
SCAND3	114821	broad.mit.edu	37	chr6	28540710	28540710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgcaagttccttaatctGggttaccacttcagaatgtt	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28540710	T	T	28540710	3	4	9	1	0	0	0	0	1	0	0	0	13988	1357	47	2	1025	2	SCAND3	6	28540710	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38903	28540710	142574357	7304	15455											
TRIM27	5987	broad.mit.edu	37	chr6	28879488	28879489	+	Missense_Mutation	DNP	CC	AA	AA													tatacctgctcaatgtgtccCcaatgtcctgcaagagaaag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	28879489	AA	AA	28879488	3	1	9	1	0	0	0	0	1	0	0	0	16625	623	22	2	806	2	TRIM27	6	28879488	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	338778	28879488	142235579	7305	15456											
ZNF311	282890	broad.mit.edu	37	chr6	28971320	28971320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagctgggtatcctggcGggtccaaagcagctggcttg	17	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28971320	T	T	28971320	3	4	9	1	0	0	0	0	1	0	0	0	17960	1116	39	1	1959	1	ZNF311	6	28971320	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91832	28971320	142143747	7306	15457											
OR2W1	26692	broad.mit.edu	37	chr6	29012093	29012093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaaggtgtaaatgagcGggttgagacttggagtgatg	15	3	1	3	rs149813138	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29012093	T	T	29012093	3	4	9	1	0	0	0	0	1	0	0	0	11126	1116	39	1	106	1	OR2W1	6	29012093	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40773	29012093	142102974	7307	15458											
OR2J3	442186	broad.mit.edu	37	chr6	29080190	29080190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtacctctgtgtggacacCgccaagtagatcactttttc	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29080190	A	A	29080190	3	1	9	1	0	0	0	0	1	0	0	0	11098	652	23	1	525	1	OR2J3	6	29080190	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68097	29080190	142034877	7308	15459											
OR2J2	26707	broad.mit.edu	37	chr6	29141763	29141763	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagagtgtgtcctactggtGgtgatgtcatatgatcgtta	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29141763	C	C	29141763	2	2	9	1	0	0	0	0	0	0	0	1	11097	1335	47	4		4	OR2J2	6	29141763	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	61573	29141763	141973304	7309	15460											
OR2J2	26707	broad.mit.edu	37	chr6	29142112	29142112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcatgcaatcaaccactGggcttcagaaagtgtttagg	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29142112	T	T	29142112	3	4	9	1	0	0	0	0	1	0	0	0	11097	1348	47	2	702	2	OR2J2	6	29142112	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	349	29142112	141972955	7310	15461											
OR2J2	26707	broad.mit.edu	37	chr6	29142264	29142264	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttatactgttgtcacaccGagtcttaatcctctaatcta	4	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29142264	T	T	29142264	2	4	9	1	0	0	0	0	0	0	0	1	11097	1045	37	3		3	OR2J2	6	29142264	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152	29142264	141972803	7311	15462											
OR12D2	26529	broad.mit.edu	37	chr6	29364509	29364509	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctcagtcaccgaatttctCctcttgggagtgacagacat	8	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29364509	A	A	29364509	2	1	9	1	0	0	0	0	0	0	0	1	11025	842	30	3		3	OR12D2	6	29364509	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	222245	29364509	141750558	7312	15463											
OR12D2	26529	broad.mit.edu	37	chr6	29364695	29364695	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatatctgttactctacGgtgacactgccaaaaatgct	8	10	2	1	rs36210741		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29364695	T	T	29364695	2	4	9	1	0	0	0	0	0	0	0	1	11025	1103	39	1		1	OR12D2	6	29364695	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	186	29364695	141750372	7313	15464											
OR12D2	26529	broad.mit.edu	37	chr6	29364987	29364987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacttctgtggttccaacCgtatccatcattttctctgt	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29364987	A	A	29364987	3	1	9	1	0	0	0	0	1	0	0	0	11025	652	23	1	513	1	OR12D2	6	29364987	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	292	29364987	141750080	7314	15465											
OR11A1	26531	broad.mit.edu	37	chr6	29395095	29395095	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaagcattcagctgtggcTagagagccgaagataaagaa	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29395095	A	A	29395095	2	1	9	1	0	0	0	0	0	0	0	1	11018	1509	53	5		5	OR11A1	6	29395095	Silent	SNP	T	TCGA-05-4396-01A-21D-1855-08	30108	29395095	141719972	7315	15466											
OR2H1	26716	broad.mit.edu	37	chr6	29429699	29429699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtctgtactgtacccCaggctccactctccaatgta	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29429699	A	A	29429699	2	1	9	1	0	0	0	0	0	0	0	1	11095	581	21	2		2	OR2H1	6	29429699	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34604	29429699	141685368	7316	15467											
MAS1L	116511	broad.mit.edu	37	chr6	29454619	29454619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagtgtggttgctccattGggtcgatgccagctgccttt	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29454619	T	T	29454619	3	4	9	1	0	0	0	0	1	0	0	0	9413	1348	47	2	77	2	MAS1L	6	29454619	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24920	29454619	141660448	7317	15468											
GABBR1	2550	broad.mit.edu	37	chr6	29572318	29572318	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctccttctccaacagccGggacttctcctcctcgttgt	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29572318	T	T	29572318	2	4	9	1	0	0	0	0	0	0	0	1	6215	1115	39	1		1	GABBR1	6	29572318	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	117699	29572318	141542749	7318	15469											
GABBR1	2550	broad.mit.edu	37	chr6	29574834	29574834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggaaaatgctctgtgccCcaggagccaaggatctgggg	16	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29574834	A	A	29574834	1	1	9	0	1	0	0	0	0	0	0	0	6215	638	22	2		2	GABBR1	6	29574834	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2516	29574834	141540233	7319	15470											
ZFP57	346171	broad.mit.edu	37	chr6	29640987	29640987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtctggaattcagcctGggtgcctggaatcctcaaag	14	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29640987	T	T	29640987	3	4	9	1	0	0	0	0	1	0	0	0	17777	1357	47	2	713	2	ZFP57	6	29640987	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66153	29640987	141474080	7320	15471											
TRIM31	11074	broad.mit.edu	37	chr6	30079482	30079482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgtactgtctccttctcCttttgctgcaagacttggat	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30079482	A	A	30079482	3	1	9	1	0	0	0	0	1	0	0	0	16629	680	24	2	849	2	TRIM31	6	30079482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	438495	30079482	141035585	7321	15472											
TRIM10	10107	broad.mit.edu	37	chr6	30126279	30126279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaaatcaaattcatccCgttgcctcaagatgtcccca	5	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30126279	A	A	30126279	3	1	9	1	0	0	0	0	1	0	0	0	16610	652	23	1	900	1	TRIM10	6	30126279	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46797	30126279	140988788	7322	15473											
TRIM10	10107	broad.mit.edu	37	chr6	30128565	30128565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgatagtgaccggctccCtcagggtaccctgacagatg	12	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30128565	A	A	30128565	3	1	9	1	0	0	0	0	1	0	0	0	16610	681	24	2	1490	2	TRIM10	6	30128565	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2286	30128565	140986502	7323	15474											
TRIM15	89870	broad.mit.edu	37	chr6	30138370	30138370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaaaatactcaccctccCagagatgatgaggatgttct	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30138370	A	A	30138370	3	1	9	1	0	0	0	0	1	0	0	0	16614	594	21	2	842	2	TRIM15	6	30138370	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9805	30138370	140976697	7324	15475											
GNL1	2794	broad.mit.edu	37	chr6	30515232	30515232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtatcgggtatggcccGgggttctggagacactcacg	15	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30515232	T	T	30515232	3	4	9	1	0	0	0	0	1	0	0	0	6599	1116	39	1	664	1	GNL1	6	30515232	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	376862	30515232	140599835	7325	15476											
GNL1	2794	broad.mit.edu	37	chr6	30522855	30522855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaggctgatacacctccCggatgtccagctccaacaac	8	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30522855	A	A	30522855	3	1	9	1	0	0	0	0	1	0	0	0	6599	652	23	1	1510	1	GNL1	6	30522855	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7623	30522855	140592212	7326	15477											
ABCF1	23	broad.mit.edu	37	chr6	30557656	30557656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccactgagtacctgcagcGgggcttcaacctgccctacc	10	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30557656	T	T	30557656	3	4	9	1	0	0	0	0	1	0	0	0	65	1116	39	1	2224	1	ABCF1	6	30557656	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34801	30557656	140557411	7327	15478											
ABCF1	23	broad.mit.edu	37	chr6	30558470	30558470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcatggtcagccggcccCgagagtgagctttccttccc	11	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30558470	A	A	30558470	2	1	9	1	0	0	0	0	0	0	0	1	65	644	23	1		1	ABCF1	6	30558470	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	814	30558470	140556597	7328	15479											
PPP1R10	5514	broad.mit.edu	37	chr6	30571827	30571827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaggattcccttctccCgctcagcctggatatatcgc	8	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30571827	A	A	30571827	3	1	9	1	0	0	0	0	1	0	0	0	12453	652	23	1	1384	1	PPP1R10	6	30571827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13357	30571827	140543240	7329	15480											
PPP1R10	5514	broad.mit.edu	37	chr6	30571943	30571943	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctccatgttatcatggctCagacgccgcgctgtctcaaa	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30571943	A	A	30571943	2	1	9	1	0	0	0	0	0	0	0	1	12453	813	29	3		3	PPP1R10	6	30571943	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	116	30571943	140543124	7330	15481											
PPP1R10	5514	broad.mit.edu	37	chr6	30572489	30572489	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgtgcttggttctgtgctCgttttcccttcaaaggggct	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30572489	A	A	30572489	2	1	9	1	0	0	0	0	0	0	0	1	12453	871	31	3		3	PPP1R10	6	30572489	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	546	30572489	140542578	7331	15482											
MRPS18B	28973	broad.mit.edu	37	chr6	30585700	30585700	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctatgctatctctcttcCgaggttctcacagagttcag	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30585700	A	A	30585700	2	1	9	1	0	0	0	0	0	0	0	1	9923	644	23	1		1	MRPS18B	6	30585700	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13211	30585700	140529367	7332	15483											
MRPS18B	28973	broad.mit.edu	37	chr6	30587378	30587378	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatatctggaatcagaaGgtacctctaaagggggaaag	13	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30587378	T	T	30587378	4	4	9	1	0	0	0	0	0	1	0	0	9923	1014	35	2	193	2	MRPS18B	6	30587378	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1678	30587378	140527689	7333	15484											
MRPS18B	28973	broad.mit.edu	37	chr6	30587716	30587716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtcggaataaagttgttGggaatccctgccccatctgt	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30587716	T	T	30587716	3	4	9	1	0	0	0	0	1	0	0	0	9923	1348	47	2	318	2	MRPS18B	6	30587716	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	338	30587716	140527351	7334	15485											
C6orf134	79969	broad.mit.edu	37	chr6	30608232	30608232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgttggtcacgtagtcGgggtgagggaaaggaaagag	17	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30608232	T	T	30608232	1	4	9	0	1	0	0	0	0	0	0	0	2353	1131	39	1		1	C6orf134	6	30608232	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20516	30608232	140506835	7335	15486											
C6orf136	221545	broad.mit.edu	37	chr6	30617330	30617330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccttctgttctttctcCttaggaccagctttatccag	5	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30617330	A	A	30617330	1	1	9	0	1	0	0	0	0	0	0	0	2354	696	24	2		2	C6orf136	6	30617330	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9098	30617330	140497737	7336	15487											
C6orf136	221545	broad.mit.edu	37	chr6	30617402	30617402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacgacaaccacttcccCatcttctcctctattctggt	3	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30617402	A	A	30617402	3	1	9	1	0	0	0	0	1	0	0	0	2354	594	21	2	689	2	C6orf136	6	30617402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	30617402	140497665	7337	15488											
C6orf136	221545	broad.mit.edu	37	chr6	30619137	30619137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggttttacagctgaccCgccaccctgagaactggacc	11	13	0	2	rs150233869	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30619137	A	A	30619137	3	1	9	1	0	0	0	0	1	0	0	0	2354	652	23	1	1215	1	C6orf136	6	30619137	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1735	30619137	140495930	7338	15489											
C6orf136	221545	broad.mit.edu	37	chr6	30619190	30619190	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggcttgtggggctgccCgtccacttgctctttttgcg	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30619190	A	A	30619190	2	1	9	1	0	0	0	0	0	0	0	1	2354	639	23	1		1	C6orf136	6	30619190	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	30619190	140495877	7339	15490											
DHX16	8449	broad.mit.edu	37	chr6	30627498	30627498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacatcatcccctctcccCaccatgtcaggcacctgtcc	5	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30627498	A	A	30627498	1	1	9	0	1	0	0	0	0	0	0	0	4542	609	21	2		2	DHX16	6	30627498	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8308	30627498	140487569	7340	15491											
DHX16	8449	broad.mit.edu	37	chr6	30633326	30633326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgctccccagctgccCggtactcccgggcgagatcc	10	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30633326	A	A	30633326	3	1	9	1	0	0	0	0	1	0	0	0	4542	652	23	1	2338	1	DHX16	6	30633326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5828	30633326	140481741	7341	15492											
DHX16	8449	broad.mit.edu	37	chr6	30633464	30633464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaagcttctctcgctccCgcttagccaggtactctcgg	8	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30633464	A	A	30633464	3	1	9	1	0	0	0	0	1	0	0	0	4542	652	23	1	2476	1	DHX16	6	30633464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138	30633464	140481603	7342	15493											
KIAA1949	170954	broad.mit.edu	37	chr6	30652689	30652689	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctccagcctccacaccGggagattccagaagcttctc	7	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30652689	T	T	30652689	2	4	9	1	0	0	0	0	0	0	0	1	8333	1103	39	1		1	KIAA1949	6	30652689	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19225	30652689	140462378	7343	15494											
KIAA1949	170954	broad.mit.edu	37	chr6	30652978	30652978	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttttctcccacattcttccGagtagtcttgtctttcttct	4	13	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30652978	T	T	30652978	4	4	9	1	0	0	0	0	0	1	0	0	8333	1059	37	3	1035	3	KIAA1949	6	30652978	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	289	30652978	140462089	7344	15495											
KIAA1949	170954	broad.mit.edu	37	chr6	30653243	30653243	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccatgcctctgacagtcGggagctcctgtctcccacct	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30653243	T	T	30653243	2	4	9	1	0	0	0	0	0	0	0	1	8333	1124	39	1		1	KIAA1949	6	30653243	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	265	30653243	140461824	7345	15496											
NRM	11270	broad.mit.edu	37	chr6	30656530	30656530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcttgctgatcaagccCgtgagccaggcccaggtaga	14	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30656530	A	A	30656530	3	1	9	1	0	0	0	0	1	0	0	0	10752	652	23	1	95	1	NRM	6	30656530	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3287	30656530	140458537	7346	15497											
MDC1	9656	broad.mit.edu	37	chr6	30670548	30670548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctagcagccttcgctccCgagccctgctcagtgcgtct	9	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30670548	A	A	30670548	3	1	9	1	0	0	0	0	1	0	0	0	9496	652	23	1	309	1	MDC1	6	30670548	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14018	30670548	140444519	7347	15498											
MDC1	9656	broad.mit.edu	37	chr6	30672299	30672299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcctgcccctagtggccCgagatgtgggctcaggggtg	16	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30672299	A	A	30672299	3	1	9	1	0	0	0	0	1	0	0	0	9496	652	23	1	1632	1	MDC1	6	30672299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1751	30672299	140442768	7348	15499											
MDC1	9656	broad.mit.edu	37	chr6	30672659	30672659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacctatttgtcctgcccCtggtggcctgagatgtgggc	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30672659	A	A	30672659	3	1	9	1	0	0	0	0	1	0	0	0	9496	681	24	2	1992	2	MDC1	6	30672659	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	360	30672659	140442408	7349	15500											
MDC1	9656	broad.mit.edu	37	chr6	30673745	30673745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacggttggcttgatagaaGgtaaaaggggagaaagaagg	17	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30673745	T	T	30673745	3	4	9	1	0	0	0	0	1	0	0	0	9496	1000	35	2	3078	2	MDC1	6	30673745	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1086	30673745	140441322	7350	15501											
MDC1	9656	broad.mit.edu	37	chr6	30680130	30680130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtataatggctgaccctggcGggacttccttctccacttgt	10	12	1	1	rs150040417	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30680130	T	T	30680130	3	4	9	1	0	0	0	0	1	0	0	0	9496	1116	39	1	4724	1	MDC1	6	30680130	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6385	30680130	140434937	7351	15502											
FLOT1	10211	broad.mit.edu	37	chr6	30698207	30698207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacatgacctccagacctGgggcagcttctctagcagca	9	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30698207	T	T	30698207	3	4	9	1	0	0	0	0	1	0	0	0	5994	1357	47	2	208	2	FLOT1	6	30698207	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18077	30698207	140416860	7352	15503											
FLOT1	10211	broad.mit.edu	37	chr6	30709393	30709393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctctgaaagcttcacctGggcaatgccagtgactgaga	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30709393	T	T	30709393	3	4	9	1	0	0	0	0	1	0	0	0	5994	1357	47	2	1115	2	FLOT1	6	30709393	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11186	30709393	140405674	7353	15504											
DDR1	780	broad.mit.edu	37	chr6	30856995	30856995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggttggagagcagtgacGgggatggggcctggtgcccc	19	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30856995	T	T	30856995	3	4	9	1	0	0	0	0	1	0	0	0	4369	1116	39	1	215	1	DDR1	6	30856995	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	147602	30856995	140258072	7354	15505											
DDR1	780	broad.mit.edu	37	chr6	30857033	30857033	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcagggtcggtgtttccCaaggaggaggagtacttgca	15	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30857033	A	A	30857033	2	1	9	1	0	0	0	0	0	0	0	1	4369	581	21	2		2	DDR1	6	30857033	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	30857033	140258034	7355	15506											
DDR1	780	broad.mit.edu	37	chr6	30859856	30859856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaagagtcaggagctgcGggtctggccaggctatgact	16	8	2	2	rs112944019		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30859856	T	T	30859856	3	4	9	1	0	0	0	0	1	0	0	0	4369	1116	39	1	765	1	DDR1	6	30859856	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2823	30859856	140255211	7356	15507											
DDR1	780	broad.mit.edu	37	chr6	30860215	30860215	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggggaccccagagcccGggctgtctcagtgccccttg	14	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30860215	T	T	30860215	3	4	9	1	0	0	0	0	1	0	0	0	4369	1116	39	1	1021	1	DDR1	6	30860215	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	359	30860215	140254852	7357	15508											
GTF2H4	2968	broad.mit.edu	37	chr6	30879058	30879058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcccaggtgaggaggcaGggccacttaaccagcatgct	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30879058	T	T	30879058	1	4	9	0	1	0	0	0	0	0	0	0	6930	1015	35	2		2	GTF2H4	6	30879058	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18843	30879058	140236009	7358	15509											
VARS2	57176	broad.mit.edu	37	chr6	30883140	30883140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttcacagatgtctctGggcccctgcctcctgcatac	8	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30883140	T	T	30883140	3	4	9	1	0	0	0	0	1	0	0	0	17251	1348	47	2	396	2	VARS2	6	30883140	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4082	30883140	140231927	7359	15510											
VARS2	57176	broad.mit.edu	37	chr6	30883192	30883192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgaggctgcctggtaccCgtggtgggtacgagagggct	18	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30883192	A	A	30883192	3	1	9	1	0	0	0	0	1	0	0	0	17251	652	23	1	448	1	VARS2	6	30883192	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	30883192	140231875	7360	15511											
VARS2	57176	broad.mit.edu	37	chr6	30884929	30884929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgcggctctacaaggcGgggttgctgtaccggaacca	14	10	1	0	rs145055169		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30884929	T	T	30884929	2	4	9	1	0	0	0	0	0	0	0	1	17251	1103	39	1		1	VARS2	6	30884929	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1737	30884929	140230138	7361	15512											
VARS2	57176	broad.mit.edu	37	chr6	30887544	30887544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccttcagcatctacacGggcgacagcttcgtcacccc	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30887544	T	T	30887544	3	4	9	1	0	0	0	0	1	0	0	0	17251	1116	39	1	1220	1	VARS2	6	30887544	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2615	30887544	140227523	7362	15513											
VARS2	57176	broad.mit.edu	37	chr6	30890693	30890693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaaggactttcctcacGggatccctgagtgtgggaca	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30890693	T	T	30890693	3	4	9	1	0	0	0	0	1	0	0	0	17251	1116	39	1	2305	1	VARS2	6	30890693	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3149	30890693	140224374	7363	15514											
VARS2	57176	broad.mit.edu	37	chr6	30890741	30890741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagattcacactctgctccCatggagttcagggtaagcct	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30890741	A	A	30890741	3	1	9	1	0	0	0	0	1	0	0	0	17251	594	21	2	2353	2	VARS2	6	30890741	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	30890741	140224326	7364	15515											
DPCR1	135656	broad.mit.edu	37	chr6	30919925	30919925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaagccccagtaaagtcCacagaaaacccagaaaaaac	5	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30919925	A	A	30919925	2	1	9	1	0	0	0	0	0	0	0	1	4752	581	21	2		2	DPCR1	6	30919925	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29184	30919925	140195142	7365	15516											
MUC21	394263	broad.mit.edu	37	chr6	30954867	30954867	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccaccaactctgagtcCagtacgacctccagtggggc	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30954867	A	A	30954867	2	1	9	1	0	0	0	0	0	0	0	1	10071	581	21	2		2	MUC21	6	30954867	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34942	30954867	140160200	7366	15517											
CCHCR1	54535	broad.mit.edu	37	chr6	31110720	31110720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgcatttgtcccttgtccCtttgtgcttggcccaagacc	9	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31110720	A	A	31110720	1	1	9	0	1	0	0	0	0	0	0	0	2905	696	24	2		2	CCHCR1	6	31110720	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	155853	31110720	140004347	7367	15518											
CCHCR1	54535	broad.mit.edu	37	chr6	31110881	31110881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcgctgctgcttgtaacGggagaggagaccttcctgct	13	11	0	2	rs150016491		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31110881	T	T	31110881	3	4	9	1	0	0	0	0	1	0	0	0	2905	1116	39	1	273	1	CCHCR1	6	31110881	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	161	31110881	140004186	7368	15519											
CCHCR1	54535	broad.mit.edu	37	chr6	31118630	31118630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcctccaagtcttcctGggtcttgctagggttggggt	14	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31118630	T	T	31118630	3	4	9	1	0	0	0	0	1	0	0	0	2905	1357	47	2	1694	2	CCHCR1	6	31118630	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7749	31118630	139996437	7369	15520											
CCHCR1	54535	broad.mit.edu	37	chr6	31122338	31122338	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctcttccaagttcttccGgacaacctcagccccagcca	5	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31122338	T	T	31122338	2	4	9	1	0	0	0	0	0	0	0	1	2905	1115	39	1		1	CCHCR1	6	31122338	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3708	31122338	139992729	7370	15521											
TCF19	6941	broad.mit.edu	37	chr6	31129415	31129415	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggtctaggggagaagccCgggttggggctggtttccgg	19	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31129415	A	A	31129415	2	1	9	1	0	0	0	0	0	0	0	1	15811	643	23	1		1	TCF19	6	31129415	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7077	31129415	139985652	7371	15522											
HLA-B	3106	broad.mit.edu	37	chr6	31323261	31323261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttggtcctcgccatccCgctgccaggtcagtgtgatc	12	13	1	1	rs151275072		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323261	A	A	31323261	3	1	9	1	0	0	0	0	1	0	0	0	7263	652	23	1	376	1	HLA-B	6	31323261	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	193846	31323261	139791806	7372	15523											
MICB	4277	broad.mit.edu	37	chr6	31477541	31477541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccagtggagcatttaccCgtttccctcttctccagagc	7	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31477541	A	A	31477541	1	1	9	0	1	0	0	0	0	0	0	0	9668	667	23	1		1	MICB	6	31477541	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	154280	31477541	139637526	7373	15524											
BAT1	7919	broad.mit.edu	37	chr6	31506604	31506604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatctgaaaagccaactccCgagtgtgacacatcaccagt	8	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31506604	A	A	31506604	3	1	9	1	0	0	0	0	1	0	0	0	1323	652	23	1	950	1	BAT1	6	31506604	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29063	31506604	139608463	7374	15525											
TNF	7124	broad.mit.edu	37	chr6	31544638	31544638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttggagggctaggatttGgggattgaagcccggctgat	16	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31544638	T	T	31544638	1	4	9	0	1	0	0	0	0	0	0	0	16394	1363	47	2		2	TNF	6	31544638	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38034	31544638	139570429	7375	15526											
AIF1	199	broad.mit.edu	37	chr6	31583996	31583996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtctctcctacatgctcCattcctcatgatttgggagg	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31583996	A	A	31583996	1	1	9	0	1	0	0	0	0	0	0	0	424	581	21	2		2	AIF1	6	31583996	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39358	31583996	139531071	7376	15527											
BAT2	7916	broad.mit.edu	37	chr6	31601729	31601729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctttccccctaaacgtcGggagcggcctcccagaaaac	8	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31601729	T	T	31601729	3	4	9	1	0	0	0	0	1	0	0	0	1324	1116	39	1	4748	1	BAT2	6	31601729	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17733	31601729	139513338	7377	15528											
BAT2	7916	broad.mit.edu	37	chr6	31605139	31605139	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggccccaactctaaattcGagttgccacctgatttcctg	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31605139	T	T	31605139	1	4	9	0	1	0	0	0	0	0	0	0	1324	1073	37	3		3	BAT2	6	31605139	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3410	31605139	139509928	7378	15529											
BAT3	7917	broad.mit.edu	37	chr6	31608254	31608254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcaggaggtggacctcGggacatggcctcttctgctg	16	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31608254	T	T	31608254	2	4	9	1	0	0	0	0	0	0	0	1	1327	1124	39	1		1	BAT3	6	31608254	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3115	31608254	139506813	7379	15530											
BAT3	7917	broad.mit.edu	37	chr6	31609326	31609326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttactcacaaaactctccCgcacatactcttctagcccc	4	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31609326	A	A	31609326	3	1	9	1	0	0	0	0	1	0	0	0	1327	652	23	1	975	1	BAT3	6	31609326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1072	31609326	139505741	7380	15531											
BAT3	7917	broad.mit.edu	37	chr6	31609586	31609586	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgggctcctgaccaccCaggtagtgctggtggaagaa	16	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31609586	A	A	31609586	2	1	9	1	0	0	0	0	0	0	0	1	1327	581	21	2		2	BAT3	6	31609586	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	260	31609586	139505481	7381	15532											
BAT3	7917	broad.mit.edu	37	chr6	31615563	31615563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcacagccggtggctgcGggggcggctgactgtgctgc	20	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31615563	T	T	31615563	3	4	9	1	0	0	0	0	1	0	0	0	1327	1116	39	1	2863	1	BAT3	6	31615563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5977	31615563	139499504	7382	15533											
BAT3	7917	broad.mit.edu	37	chr6	31616462	31616462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccacttacctccatccGggatagtaaggtctgtatat	8	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31616462	T	T	31616462	2	4	9	1	0	0	0	0	0	0	0	1	1327	1115	39	1		1	BAT3	6	31616462	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	899	31616462	139498605	7383	15534											
BAT3	7917	broad.mit.edu	37	chr6	31616512	31616512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctgagccatcaccagcCgtacccggggctcactctac	10	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31616512	A	A	31616512	3	1	9	1	0	0	0	0	1	0	0	0	1327	652	23	1	2984	1	BAT3	6	31616512	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	31616512	139498555	7384	15535											
BAT4	7918	broad.mit.edu	37	chr6	31630077	31630077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtaagtccttagatccCgctcccaagccctgtctttc	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31630077	A	A	31630077	3	1	9	1	0	0	0	0	1	0	0	0	1328	652	23	1	37	1	BAT4	6	31630077	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13565	31630077	139484990	7385	15536											
CSNK2B	1460	broad.mit.edu	37	chr6	31638716	31638716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaactgcccatctcccCagaattccaaaatgaaggtc	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31638716	A	A	31638716	1	1	9	0	1	0	0	0	0	0	0	0	3993	609	21	2		2	CSNK2B	6	31638716	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8639	31638716	139476351	7386	15537											
LY6G5B	58496	broad.mit.edu	37	chr6	31639664	31639664	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaaggttcgcttcatcgttCgaggctgtggacagtacatt	11	9	2	0	rs150877267	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31639664	A	A	31639664	2	1	9	1	0	0	0	0	0	0	0	1	9180	876	31	3		3	LY6G5B	6	31639664	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	948	31639664	139475403	7387	15538											
CSNK2B	1460	broad.mit.edu	37	chr6	31640092	31640092	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatctttctgtaacaccCtcagcatcctgcactgccct	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31640092	A	A	31640092	1	1	9	0	1	0	0	0	0	0	0	0	3993	696	24	2		2	CSNK2B	6	31640092	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	428	31640092	139474975	7388	15539											
LY6G5C	80741	broad.mit.edu	37	chr6	31644829	31644829	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagacaccggagaagttcGggtatttgaacaatcactca	10	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31644829	T	T	31644829	2	4	9	1	0	0	0	0	0	0	0	1	9181	1124	39	1		1	LY6G5C	6	31644829	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4737	31644829	139470238	7389	15540											
LY6G5C	80741	broad.mit.edu	37	chr6	31646916	31646916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcagctgctgccagctGgggtgaggcagatgtcagat	16	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31646916	T	T	31646916	3	4	9	1	0	0	0	0	1	0	0	0	9181	1348	47	2	209	2	LY6G5C	6	31646916	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2087	31646916	139468151	7390	15541											
BAT5	7920	broad.mit.edu	37	chr6	31655226	31655226	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatccccagtccccctatgtGagccctggccattcaagaac	7	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31655226	T	T	31655226	1	4	9	0	1	0	0	0	0	0	0	0	1329	1305	45	3		3	BAT5	6	31655226	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8310	31655226	139459841	7391	15542											
DDAH2	23564	broad.mit.edu	37	chr6	31695061	31695061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcagagggagctgagccCggcgccagccttctccagtt	13	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31695061	A	A	31695061	3	1	9	1	0	0	0	0	1	0	0	0	4355	652	23	1	50	1	DDAH2	6	31695061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39835	31695061	139420006	7392	15543											
MSH5	4439	broad.mit.edu	37	chr6	31708880	31708880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattaaattatataagacatGgtaaaccctacacttatgag	6	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31708880	T	T	31708880	1	4	9	0	1	0	0	0	0	0	0	0	9967	1363	47	2		2	MSH5	6	31708880	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13819	31708880	139406187	7393	15544											
MSH5	4439	broad.mit.edu	37	chr6	31711626	31711626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgtctcattcttaaaatGgggtgaaaaaattgagctac	8	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31711626	T	T	31711626	1	4	9	0	1	0	0	0	0	0	0	0	9967	1363	47	2		2	MSH5	6	31711626	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2746	31711626	139403441	7394	15545											
MSH5	4439	broad.mit.edu	37	chr6	31712015	31712015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggtcgaagaagaatcGgggttgaactggaagactat	14	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31712015	T	T	31712015	3	4	9	1	0	0	0	0	1	0	0	0	9967	1116	39	1	659	1	MSH5	6	31712015	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	389	31712015	139403052	7395	15546											
MSH5	4439	broad.mit.edu	37	chr6	31726812	31726812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaagctccctctagggtGgggaggtgtccagtaagtct	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31726812	T	T	31726812	1	4	9	0	1	0	0	0	0	0	0	0	9967	1363	47	2		2	MSH5	6	31726812	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14797	31726812	139388255	7396	15547											
C6orf26	401251	broad.mit.edu	37	chr6	31732050	31732050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcccctccagttctcccCaagtccactgaacaaggcta	5	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31732050	A	A	31732050	3	1	9	1	0	0	0	0	1	0	0	0	2384	594	21	2	373	2	C6orf26	6	31732050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5238	31732050	139383017	7397	15548											
C6orf27	80737	broad.mit.edu	37	chr6	31733766	31733766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccatcaccacggaatccGgggccgctgaatctgggacc	11	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31733766	T	T	31733766	3	4	9	1	0	0	0	0	1	0	0	0	2385	1116	39	1	289	1	C6orf27	6	31733766	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1716	31733766	139381301	7398	15549											
C6orf27	80737	broad.mit.edu	37	chr6	31735301	31735301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagacccctggggtcaGggaagagattgtcacatgaa	15	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31735301	T	T	31735301	1	4	9	0	1	0	0	0	0	0	0	0	2385	1015	35	2		2	C6orf27	6	31735301	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1535	31735301	139379766	7399	15550											
C6orf27	80737	broad.mit.edu	37	chr6	31735435	31735435	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagctgctgatgtctcCgtggatccggactgtgatct	12	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31735435	A	A	31735435	4	1	9	1	0	0	0	0	0	1	0	0	2385	661	23	1	1102	1	C6orf27	6	31735435	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	31735435	139379632	7400	15551											
VARS	7407	broad.mit.edu	37	chr6	31749647	31749647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggagactgatcttgtcaGgggacactccgaactccttg	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31749647	T	T	31749647	3	4	9	1	0	0	0	0	1	0	0	0	17250	1000	35	2	1518	2	VARS	6	31749647	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14212	31749647	139365420	7401	15552											
LSM2	57819	broad.mit.edu	37	chr6	31765492	31765492	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgggacttggggttatGggtcaccaatgaaagaggga	18	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31765492	T	T	31765492	1	4	9	0	1	0	0	0	0	0	0	0	9143	1363	47	2		2	LSM2	6	31765492	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	15845	31765492	139349575	7402	15553											
SLC44A4	80736	broad.mit.edu	37	chr6	31832529	31832529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtctggaagacatgaccCgttggggttattgggttcct	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31832529	A	A	31832529	1	1	9	0	1	0	0	0	0	0	0	0	14752	667	23	1		1	SLC44A4	6	31832529	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	67037	31832529	139282538	7403	15554											
SLC44A4	80736	broad.mit.edu	37	chr6	31833876	31833876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaagacgcacatcagccCtgggcacgaggagttcacaa	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31833876	A	A	31833876	3	1	9	1	0	0	0	0	1	0	0	0	14752	681	24	2	903	2	SLC44A4	6	31833876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1347	31833876	139281191	7404	15555											
CFB	629	broad.mit.edu	37	chr6	31912458	31912458	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagccactgcacccacccGggtctgcttattctaccctt	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31912458	T	T	31912458	1	4	9	0	1	0	0	0	0	0	0	0	3308	1131	39	1		1	CFB	6	31912458	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	78582	31912458	139202609	7405	15556											
CFB	629	broad.mit.edu	37	chr6	31912745	31912745	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacactgtctcctgtcaccCtttgctggcaggagaatctg	10	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31912745	A	A	31912745	1	1	9	0	1	0	0	0	0	0	0	0	3308	696	24	2		2	CFB	6	31912745	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	287	31912745	139202322	7406	15557											
CFB	629	broad.mit.edu	37	chr6	31915464	31915464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgatcccccgtctctttGgtcactgtatccctgacact	6	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31915464	T	T	31915464	1	4	9	0	1	0	0	0	0	0	0	0	3308	1363	47	2		2	CFB	6	31915464	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2719	31915464	139199603	7407	15558											
CFB	629	broad.mit.edu	37	chr6	31917120	31917120	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccaagggaggattatctGggtgagtaacctgcctagga	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31917120	T	T	31917120	2	4	9	1	0	0	0	0	0	0	0	1	3308	1362	47	2		2	CFB	6	31917120	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1656	31917120	139197947	7408	15559											
CFB	629	broad.mit.edu	37	chr6	31919286	31919286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggttgtgctacaagtgccCaaggcccaacagtccttttc	9	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31919286	A	A	31919286	1	1	9	0	1	0	0	0	0	0	0	0	3308	609	21	2		2	CFB	6	31919286	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2166	31919286	139195781	7409	15560											
CFB	629	broad.mit.edu	37	chr6	31919727	31919727	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggtacctgctcacgccCgagactttcacatcaacctc	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31919727	A	A	31919727	2	1	9	1	0	0	0	0	0	0	0	1	3308	644	23	1		1	CFB	6	31919727	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	441	31919727	139195340	7410	15561											
RDBP	7936	broad.mit.edu	37	chr6	31919871	31919871	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgacaacacctgtgttcCagatccttttggggcaaggg	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31919871	G	G	31919871	1	3	9	0	1	0	0	0	0	0	0	0	13296	609	21	4		4	RDBP	6	31919871	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	144	31919871	139195196	7411	15562											
SKIV2L	6499	broad.mit.edu	37	chr6	31928187	31928187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaagctcagcctcattgGggctctgatctcttgcctta	9	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31928187	T	T	31928187	1	4	9	0	1	0	0	0	0	0	0	0	14472	1247	43	2		2	SKIV2L	6	31928187	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8316	31928187	139186880	7412	15563											
SKIV2L	6499	broad.mit.edu	37	chr6	31928482	31928482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataacagatctgaacacacGggaggaggctgaggaggaga	15	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31928482	T	T	31928482	3	4	9	1	0	0	0	0	1	0	0	0	14472	1116	39	1	531	1	SKIV2L	6	31928482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	295	31928482	139186585	7413	15564											
SKIV2L	6499	broad.mit.edu	37	chr6	31928806	31928806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgacctgatttcatgtcCctatcctacagatcttctta	5	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31928806	A	A	31928806	1	1	9	0	1	0	0	0	0	0	0	0	14472	638	22	2		2	SKIV2L	6	31928806	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	324	31928806	139186261	7414	15565											
SKIV2L	6499	broad.mit.edu	37	chr6	31931192	31931192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctctcctttcttcaggcGgctgaagcgtcgtcagatct	9	14	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31931192	T	T	31931192	3	4	9	1	0	0	0	0	1	0	0	0	14472	1116	39	1	1460	1	SKIV2L	6	31931192	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2386	31931192	139183875	7415	15566											
SKIV2L	6499	broad.mit.edu	37	chr6	31931696	31931696	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttccttctccaggaccgcGgagtgtacctgtccctcctg	9	17	1	0	rs144670908	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31931696	T	T	31931696	4	4	9	1	0	0	0	0	0	1	0	0	14472	1117	39	1	1716	1	SKIV2L	6	31931696	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	504	31931696	139183371	7416	15567											
SKIV2L	6499	broad.mit.edu	37	chr6	31931769	31931769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgttcaccttctcccGgggccgctgtgatgagcagg	16	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31931769	T	T	31931769	3	4	9	1	0	0	0	0	1	0	0	0	14472	1116	39	1	1789	1	SKIV2L	6	31931769	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73	31931769	139183298	7417	15568											
SKIV2L	6499	broad.mit.edu	37	chr6	31935219	31935219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctctctccattttcccCacttggccagggcaggttgc	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31935219	A	A	31935219	1	1	9	0	1	0	0	0	0	0	0	0	14472	609	21	2		2	SKIV2L	6	31935219	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3450	31935219	139179848	7418	15569											
DOM3Z	1797	broad.mit.edu	37	chr6	31938818	31938818	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatagtgttccctggaaccGggaggctgccagctgccagc	14	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31938818	T	T	31938818	2	4	9	1	0	0	0	0	0	0	0	1	4745	1115	39	1		1	DOM3Z	6	31938818	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3599	31938818	139176249	7419	15570											
STK19	8859	broad.mit.edu	37	chr6	31940167	31940167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccattcctaccccttcccCggtaccataaaatcccggga	5	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31940167	A	A	31940167	2	1	9	1	0	0	0	0	0	0	0	1	15410	639	23	1		1	STK19	6	31940167	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1349	31940167	139174900	7420	15571											
ATF6B	1388	broad.mit.edu	37	chr6	32084515	32084515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacataaaatgtgtcttccCgtcggtcaattgcatccaag	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32084515	A	A	32084515	3	1	9	1	0	0	0	0	1	0	0	0	1089	652	23	1	360	1	ATF6B	6	32084515	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144348	32084515	139030552	7421	15572											
FKBPL	63943	broad.mit.edu	37	chr6	32096599	32096599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttcctcctgggctgccCggtttttgggatctatcgcc	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32096599	A	A	32096599	3	1	9	1	0	0	0	0	1	0	0	0	5973	652	23	1	94	1	FKBPL	6	32096599	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12084	32096599	139018468	7422	15573											
FKBPL	63943	broad.mit.edu	37	chr6	32096716	32096716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttaaatggccaggctccCgctccaacacccggtcacag	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32096716	A	A	32096716	3	1	9	1	0	0	0	0	1	0	0	0	5973	652	23	1	211	1	FKBPL	6	32096716	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	32096716	139018351	7423	15574											
PPT2	9374	broad.mit.edu	37	chr6	32130594	32130594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttgaaggtttatctgcGggattcttttgggttgaaga	12	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32130594	T	T	32130594	3	4	9	1	0	0	0	0	1	0	0	0	12513	1116	39	1	828	1	PPT2	6	32130594	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33878	32130594	138984473	7424	15575											
AGPAT1	10554	broad.mit.edu	37	chr6	32138807	32138807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcacctccactcggatccCgtacaggtatttgatgtgga	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32138807	A	A	32138807	3	1	9	1	0	0	0	0	1	0	0	0	386	652	23	1	630	1	AGPAT1	6	32138807	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8213	32138807	138976260	7425	15576											
RNF5	6048	broad.mit.edu	37	chr6	32147346	32147346	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcttcatcaggtgcgtactCaggagatgaagagggaaatg	14	6	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32147346	A	A	32147346	1	1	9	0	1	0	0	0	0	0	0	0	13608	841	29	3		3	RNF5	6	32147346	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8539	32147346	138967721	7426	15577											
RNF5	6048	broad.mit.edu	37	chr6	32147366	32147366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagatgaagagggaaatGgggaggtctgaggagctgta	19	3	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32147366	T	T	32147366	1	4	9	0	1	0	0	0	0	0	0	0	13608	1363	47	2		2	RNF5	6	32147366	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	32147366	138967701	7427	15578											
AGER	177	broad.mit.edu	37	chr6	32149043	32149043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagattggggggaatgcGgcacgttgtcgttccacccc	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32149043	T	T	32149043	1	4	9	0	1	0	0	0	0	0	0	0	379	1131	39	1		1	AGER	6	32149043	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1677	32149043	138966024	7428	15579											
AGER	177	broad.mit.edu	37	chr6	32151332	32151332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaccctggaattcttacGgtagacacggactcggtagt	12	9	1	2	rs142731923		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32151332	T	T	32151332	3	4	9	1	0	0	0	0	1	0	0	0	379	1130	39	1	924	1	AGER	6	32151332	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2289	32151332	138963735	7429	15580											
AGER	177	broad.mit.edu	37	chr6	32151347	32151347	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacggtagacacggactcGgtagttggacttggtctcct	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32151347	T	T	32151347	2	4	9	1	0	0	0	0	0	0	0	1	379	1124	39	1		1	AGER	6	32151347	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	32151347	138963720	7430	15581											
GPSM3	63940	broad.mit.edu	37	chr6	32159053	32159053	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgtgtctttcagtctctGgtacccctgccaagcaagag	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32159053	T	T	32159053	1	4	9	0	1	0	0	0	0	0	0	0	6802	1363	47	2		2	GPSM3	6	32159053	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	7706	32159053	138956014	7431	15582											
NOTCH4	4855	broad.mit.edu	37	chr6	32164732	32164732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggcccccacgtctgcttGggctgcaatcagttcttcaa	9	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32164732	T	T	32164732	3	4	9	1	0	0	0	0	1	0	0	0	10646	1357	47	2	853	2	NOTCH4	6	32164732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5679	32164732	138950335	7432	15583											
C6orf10	10665	broad.mit.edu	37	chr6	32261036	32261036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcactcttctttacttGggattccagtgtttctggta	8	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32261036	T	T	32261036	3	4	9	1	0	0	0	0	1	0	0	0	2340	1357	47	2	281	2	C6orf10	6	32261036	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96304	32261036	138854031	7433	15584											
C6orf10	10665	broad.mit.edu	37	chr6	32261351	32261351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctcactcttctctacctGggcttcctgtcctttcagta	5	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32261351	T	T	32261351	3	4	9	1	0	0	0	0	1	0	0	0	2340	1357	47	2	596	2	C6orf10	6	32261351	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	315	32261351	138853716	7434	15585											
C6orf10	10665	broad.mit.edu	37	chr6	32261396	32261396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacccactcttcgttacttGggcttcttgtccttttggga	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32261396	T	T	32261396	3	4	9	1	0	0	0	0	1	0	0	0	2340	1357	47	2	641	2	C6orf10	6	32261396	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	32261396	138853671	7435	15586											
C6orf10	10665	broad.mit.edu	37	chr6	32317581	32317581	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgagttctgtttgtccCagggagaacttagatgccat	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32317581	A	A	32317581	2	1	9	1	0	0	0	0	0	0	0	1	2340	581	21	2		2	C6orf10	6	32317581	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	56185	32317581	138797486	7436	15587											
C6orf10	10665	broad.mit.edu	37	chr6	32334074	32334074	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgttgaatatgcatgtcGggatcctaaaagagaagata	11	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32334074	T	T	32334074	2	4	9	1	0	0	0	0	0	0	0	1	2340	1124	39	1		1	C6orf10	6	32334074	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16493	32334074	138780993	7437	15588											
HLA-DQA2	3118	broad.mit.edu	37	chr6	32713959	32713959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccaccccatcccatccCacacacatgcacatgagcac	3	22	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32713959	A	A	32713959	1	1	9	0	1	0	0	0	0	0	0	0	7272	609	21	2		2	HLA-DQA2	6	32713959	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	379885	32713959	138401108	7438	15589											
HLA-DOB	3112	broad.mit.edu	37	chr6	32781172	32781172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctctggccaaagaaccGggagaatgatctgccactca	9	14	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32781172	T	T	32781172	1	4	9	0	1	0	0	0	0	0	0	0	7268	1131	39	1		1	HLA-DOB	6	32781172	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	67213	32781172	138333895	7439	15590											
HLA-DOB	3112	broad.mit.edu	37	chr6	32783046	32783046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgcaccttttctgtccCgttggtgaagtaacagtcag	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32783046	A	A	32783046	3	1	9	1	0	0	0	0	1	0	0	0	7268	652	23	1	705	1	HLA-DOB	6	32783046	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1874	32783046	138332021	7440	15591											
PSMB8	5696	broad.mit.edu	37	chr6	32809450	32809450	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataagtgttcccactaccCgtggagaacatatttcctga	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32809450	A	A	32809450	2	1	9	1	0	0	0	0	0	0	0	1	12789	639	23	1		1	PSMB8	6	32809450	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26404	32809450	138305617	7441	15592											
PSMB9	5698	broad.mit.edu	37	chr6	32823969	32823969	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgatgggttctgattccCgagtgtctgcagggtgagta	15	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32823969	A	A	32823969	2	1	9	1	0	0	0	0	0	0	0	1	12790	644	23	1		1	PSMB9	6	32823969	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14519	32823969	138291098	7442	15593											
PSMB9	5698	broad.mit.edu	37	chr6	32827217	32827217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagccgggatggctcaagcGggggtgtcatctacctggtc	16	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32827217	T	T	32827217	3	4	9	1	0	0	0	0	1	0	0	0	12790	1116	39	1	590	1	PSMB9	6	32827217	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3248	32827217	138287850	7443	15594											
HLA-DMA	3108	broad.mit.edu	37	chr6	32918307	32918307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcctgacctctggacaccGggattttcccatcaagtttt	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32918307	T	T	32918307	3	4	9	1	0	0	0	0	1	0	0	0	7265	1116	39	1	439	1	HLA-DMA	6	32918307	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91090	32918307	138196760	7444	15595											
HLA-DMA	3108	broad.mit.edu	37	chr6	32918420	32918420	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcccagtcagcaaattcGggcaggcgaggcacccgagt	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32918420	T	T	32918420	2	4	9	1	0	0	0	0	0	0	0	1	7265	1103	39	1		1	HLA-DMA	6	32918420	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	113	32918420	138196647	7445	15596											
HLA-DPA1	3113	broad.mit.edu	37	chr6	33036958	33036958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcagtgaccagctcccCgttgcacagccacgtgacgt	9	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33036958	A	A	33036958	3	1	9	1	0	0	0	0	1	0	0	0	7269	652	23	1	324	1	HLA-DPA1	6	33036958	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118538	33036958	138078109	7446	15597											
COL11A2	1302	broad.mit.edu	37	chr6	33133723	33133723	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccgggtgtcctggaggGccctgcacacccttctctcc	10	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33133723	T	T	33133723	2	4	9	1	0	0	0	0	0	0	0	1	3700	1190	42	3		3	COL11A2	6	33133723	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96765	33133723	137981344	7447	15598											
SLC39A7	7922	broad.mit.edu	37	chr6	33169653	33169653	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcttccggtgggctcctGggagatgctttcctgcacct	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33169653	T	T	33169653	2	4	9	1	0	0	0	0	0	0	0	1	14737	1335	47	2		2	SLC39A7	6	33169653	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35930	33169653	137945414	7448	15599											
RING1	6015	broad.mit.edu	37	chr6	33178833	33178833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgtttaataaatattaGgtatcgtcattaggattttt	7	2	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33178833	T	T	33178833	1	4	9	0	1	0	0	0	0	0	0	0	13485	1015	35	2		2	RING1	6	33178833	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9180	33178833	137936234	7449	15600											
VPS52	6293	broad.mit.edu	37	chr6	33219259	33219259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaaaataattaatgatGggggatctgagtggggcctg	17	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33219259	T	T	33219259	1	4	9	0	1	0	0	0	0	0	0	0	17341	1363	47	2		2	VPS52	6	33219259	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	40426	33219259	137895808	7450	15601											
VPS52	6293	broad.mit.edu	37	chr6	33231813	33231813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccagcaattgcatggtcCgttcattaggaattgtctgg	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33231813	A	A	33231813	3	1	9	1	0	0	0	0	1	0	0	0	17341	652	23	1	603	1	VPS52	6	33231813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12554	33231813	137883254	7451	15602											
VPS52	6293	broad.mit.edu	37	chr6	33235742	33235742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgatctcctttgctgttgctCgttcattgcccagcagaaac	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33235742	A	A	33235742	3	1	9	1	0	0	0	0	1	0	0	0	17341	884	31	3	1386	3	VPS52	6	33235742	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3929	33235742	137879325	7452	15603											
VPS52	6293	broad.mit.edu	37	chr6	33238058	33238058	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggagcccaggaccaccCgcctggaaagggataagtta	12	12	0	0	rs79966321		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33238058	A	A	33238058	2	1	9	1	0	0	0	0	0	0	0	1	17341	639	23	1		1	VPS52	6	33238058	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2316	33238058	137877009	7453	15604											
WDR46	9277	broad.mit.edu	37	chr6	33256166	33256166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcaagcagcagctcagaacGagcagctttgatacttgttt	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33256166	T	T	33256166	3	4	9	1	0	0	0	0	1	0	0	0	17426	1058	37	3	1438	3	WDR46	6	33256166	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18108	33256166	137858901	7454	15605											
RGL2	5863	broad.mit.edu	37	chr6	33260713	33260713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactacattcaattccatttGgctgcccaaacctcagacaa	4	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33260713	T	T	33260713	1	4	9	0	1	0	0	0	0	0	0	0	13385	1363	47	2		2	RGL2	6	33260713	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4547	33260713	137854354	7455	15606											
RGL2	5863	broad.mit.edu	37	chr6	33261562	33261562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagtcccaacctcaccCgccagtcacctctgagcctc	7	20	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33261562	A	A	33261562	1	1	9	0	1	0	0	0	0	0	0	0	13385	667	23	1		1	RGL2	6	33261562	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	849	33261562	137853505	7456	15607											
RGL2	5863	broad.mit.edu	37	chr6	33263862	33263862	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggaacaccaggacatcCgtggggtcagcagggggatc	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33263862	A	A	33263862	2	1	9	1	0	0	0	0	0	0	0	1	13385	639	23	1		1	RGL2	6	33263862	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2300	33263862	137851205	7457	15608											
RGL2	5863	broad.mit.edu	37	chr6	33263913	33263913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggggcttaggaaggtcGggggcctgggggtccacccg	20	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33263913	T	T	33263913	2	4	9	1	0	0	0	0	0	0	0	1	13385	1103	39	1		1	RGL2	6	33263913	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	33263913	137851154	7458	15609											
RGL2	5863	broad.mit.edu	37	chr6	33263983	33263983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccccccaacacccttcCctgctgcataccctgtctga	5	21	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33263983	A	A	33263983	3	1	9	1	0	0	0	0	1	0	0	0	13385	623	22	2	1795	2	RGL2	6	33263983	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	33263983	137851084	7459	15610											
TAPBP	6892	broad.mit.edu	37	chr6	33272708	33272708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatccctccccctattacGgtccccacaatccagtgccc	4	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33272708	T	T	33272708	1	4	9	0	1	0	0	0	0	0	0	0	15671	1131	39	1		1	TAPBP	6	33272708	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8725	33272708	137842359	7460	15611											
ZBTB22	9278	broad.mit.edu	37	chr6	33283208	33283208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtcccgcatgctcttgtGggagaaggccttcccacaat	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33283208	T	T	33283208	3	4	9	1	0	0	0	0	1	0	0	0	17656	1348	47	2	422	2	ZBTB22	6	33283208	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10500	33283208	137831859	7461	15612											
ZBTB22	9278	broad.mit.edu	37	chr6	33283340	33283340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccccacggtcactgcccCgtgttctgcttggttccctg	10	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33283340	A	A	33283340	3	1	9	1	0	0	0	0	1	0	0	0	17656	652	23	1	554	1	ZBTB22	6	33283340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132	33283340	137831727	7462	15613											
ZBTB22	9278	broad.mit.edu	37	chr6	33283405	33283405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggatgaagacgacgacGggaagaccaggatctggttg	16	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33283405	T	T	33283405	3	4	9	1	0	0	0	0	1	0	0	0	17656	1116	39	1	619	1	ZBTB22	6	33283405	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65	33283405	137831662	7463	15614											
DAXX	1616	broad.mit.edu	37	chr6	33289465	33289465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagccatccccctccctgGggtacaacaatcttccccgc	7	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33289465	T	T	33289465	1	4	9	0	1	0	0	0	0	0	0	0	4276	1247	43	2		2	DAXX	6	33289465	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6060	33289465	137825602	7464	15615											
DAXX	1616	broad.mit.edu	37	chr6	33289483	33289483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtacaacaatcttcccCgctaaagctcacctcttcga	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33289483	A	A	33289483	1	1	9	0	1	0	0	0	0	0	0	0	4276	667	23	1		1	DAXX	6	33289483	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	33289483	137825584	7465	15616											
KIFC1	3833	broad.mit.edu	37	chr6	33366082	33366082	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaacggacaagaggcctGggtgcaacgaccaaaattac	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33366082	T	T	33366082	2	4	9	1	0	0	0	0	0	0	0	1	8382	1335	47	2		2	KIFC1	6	33366082	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76599	33366082	137748985	7466	15617											
PHF1	5252	broad.mit.edu	37	chr6	33381849	33381849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatgctgtgtgtgtcgcGggggccctgagaaagtccgg	17	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33381849	T	T	33381849	3	4	9	1	0	0	0	0	1	0	0	0	11915	1116	39	1	741	1	PHF1	6	33381849	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15767	33381849	137733218	7467	15618											
PHF1	5252	broad.mit.edu	37	chr6	33383373	33383373	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccaaccccagcagcccCatccggatgtttgcttcctt	6	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33383373	A	A	33383373	2	1	9	1	0	0	0	0	0	0	0	1	11915	594	21	2		2	PHF1	6	33383373	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1524	33383373	137731694	7468	15619											
CUTA	51596	broad.mit.edu	37	chr6	33385320	33385320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctgcagagaccgagccCggaacgtagccagagccgga	15	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33385320	A	A	33385320	2	1	9	1	0	0	0	0	0	0	0	1	4095	639	23	1		1	CUTA	6	33385320	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1947	33385320	137729747	7469	15620											
CUTA	51596	broad.mit.edu	37	chr6	33385344	33385344	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtagccagagccggaatcCgaggccggcgagggctgggt	18	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33385344	A	A	33385344	2	1	9	1	0	0	0	0	0	0	0	1	4095	639	23	1		1	CUTA	6	33385344	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	33385344	137729723	7470	15621											
SYNGAP1	8831	broad.mit.edu	37	chr6	33391299	33391299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccaatacgttcattcccCgtatgatcgtcctggttgga	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33391299	A	A	33391299	3	1	9	1	0	0	0	0	1	0	0	0	15566	652	23	1	119	1	SYNGAP1	6	33391299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5955	33391299	137723768	7471	15622											
SYNGAP1	8831	broad.mit.edu	37	chr6	33393631	33393631	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagtcgcaacaaactgctGagacgcacagtctccgtgcc	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33393631	T	T	33393631	2	4	9	1	0	0	0	0	0	0	0	1	15566	1277	45	3		3	SYNGAP1	6	33393631	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2332	33393631	137721436	7472	15623											
SYNGAP1	8831	broad.mit.edu	37	chr6	33403263	33403263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctcccctctgtagccCtttccctcaactccacactc	3	21	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33403263	A	A	33403263	1	1	9	0	1	0	0	0	0	0	0	0	15566	696	24	2		2	SYNGAP1	6	33403263	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9632	33403263	137711804	7473	15624											
SYNGAP1	8831	broad.mit.edu	37	chr6	33411384	33411384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctggcactgacttcaccCgtcggcagctttcactccag	8	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33411384	A	A	33411384	3	1	9	1	0	0	0	0	1	0	0	0	15566	652	23	1	3113	1	SYNGAP1	6	33411384	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8121	33411384	137703683	7474	15625											
ITPR3	3710	broad.mit.edu	37	chr6	33656982	33656982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggccgtggtgggcttgaGggagccctgctcaccctgcc	17	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33656982	T	T	33656982	1	4	9	0	1	0	0	0	0	0	0	0	7992	1015	35	2		2	ITPR3	6	33656982	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	245598	33656982	137458085	7475	15626											
LEMD2	221496	broad.mit.edu	37	chr6	33744902	33744902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcaaccctttattcaccaGggggccacgcacctataatc	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33744902	T	T	33744902	1	4	9	0	1	0	0	0	0	0	0	0	8792	1015	35	2		2	LEMD2	6	33744902	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	87920	33744902	137370165	7476	15627											
HMGA1	3159	broad.mit.edu	37	chr6	34208668	34208668	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagcctccggtgagtccCgggacagcgctggtagggag	17	11	0	1	rs145962870	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34208668	A	A	34208668	2	1	9	1	0	0	0	0	0	0	0	1	7290	639	23	1		1	HMGA1	6	34208668	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	463766	34208668	136906399	7477	15628											
RPS10	6204	broad.mit.edu	37	chr6	34389521	34389521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacgtggcacagcactcCgtctgtaggtatctctgtca	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34389521	A	A	34389521	3	1	9	1	0	0	0	0	1	0	0	0	13731	652	23	1	123	1	RPS10	6	34389521	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	180853	34389521	136725546	7478	15629											
PACSIN1	29993	broad.mit.edu	37	chr6	34496422	34496422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgccattccctcaggccCacagtatggcagcctggagc	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34496422	A	A	34496422	3	1	9	1	0	0	0	0	1	0	0	0	11468	594	21	2	234	2	PACSIN1	6	34496422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106901	34496422	136618645	7479	15630											
C6orf106	64771	broad.mit.edu	37	chr6	34614480	34614480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacatctgcaatctcttGgggctctagcgatctcacca	9	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34614480	T	T	34614480	3	4	9	1	0	0	0	0	1	0	0	0	2342	1357	47	2	499	2	C6orf106	6	34614480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	118058	34614480	136500587	7480	15631											
C6orf106	64771	broad.mit.edu	37	chr6	34622442	34622442	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttacaaactgagtatcCggaggtattgactccccttc	8	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34622442	A	A	34622442	2	1	9	1	0	0	0	0	0	0	0	1	2342	639	23	1		1	C6orf106	6	34622442	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7962	34622442	136492625	7481	15632											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34804116	34804116	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgatgatagccagtccCgagagccaggtaccccatga	11	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34804116	A	A	34804116	2	1	9	1	0	0	0	0	0	0	0	1	17094	644	23	1		1	UHRF1BP1	6	34804116	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	181674	34804116	136310951	7482	15633											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34823441	34823441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccatgcagcttaccttcCgcaagatggcgtttgactat	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34823441	A	A	34823441	3	1	9	1	0	0	0	0	1	0	0	0	17094	652	23	1	1115	1	UHRF1BP1	6	34823441	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19325	34823441	136291626	7483	15634											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34824131	34824131	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtggcatgaagagacGggtctgaaaccaccctggca	14	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34824131	T	T	34824131	2	4	9	1	0	0	0	0	0	0	0	1	17094	1103	39	1		1	UHRF1BP1	6	34824131	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	690	34824131	136290936	7484	15635											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34824145	34824145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacgggtctgaaaccacCctggcaccttggagtagact	12	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34824145	A	A	34824145	3	1	9	1	0	0	0	0	1	0	0	0	17094	623	22	2	1288	2	UHRF1BP1	6	34824145	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	34824145	136290922	7485	15636											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34826612	34826612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacattccccggcccatgtcCgcgtgaggcttgaccactac	9	16	0	2	rs61732794	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34826612	A	A	34826612	3	1	9	1	0	0	0	0	1	0	0	0	17094	652	23	1	2533	1	UHRF1BP1	6	34826612	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2467	34826612	136288455	7486	15637											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34827292	34827292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaaggatgccttcagtttGggcagagatcgaatgacctc	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34827292	T	T	34827292	3	4	9	1	0	0	0	0	1	0	0	0	17094	1339	47	2	3213	2	UHRF1BP1	6	34827292	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	680	34827292	136287775	7487	15638											
ANKS1A	23294	broad.mit.edu	37	chr6	34934972	34934972	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactttggtttgtgacttcGgtctgtgaaatctatgtctc	9	7	3	2	rs80085216	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34934972	T	T	34934972	1	4	9	0	1	0	0	0	0	0	0	0	688	1131	39	1		1	ANKS1A	6	34934972	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	107680	34934972	136180095	7488	15639											
ANKS1A	23294	broad.mit.edu	37	chr6	34985237	34985237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttatttctctgtctctcCgtccactccaagaccacagg	5	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34985237	A	A	34985237	1	1	9	0	1	0	0	0	0	0	0	0	688	667	23	1		1	ANKS1A	6	34985237	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50265	34985237	136129830	7489	15640											
ANKS1A	23294	broad.mit.edu	37	chr6	35051202	35051202	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcctgtagaaatctacGgagcacatgaagaagatccc	9	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35051202	T	T	35051202	2	4	9	1	0	0	0	0	0	0	0	1	688	1103	39	1		1	ANKS1A	6	35051202	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	65965	35051202	136063865	7490	15641											
TCP11	6954	broad.mit.edu	37	chr6	35087099	35087099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttagagcaacaaggccCatattcttgaggctttgatg	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35087099	A	A	35087099	3	1	9	1	0	0	0	0	1	0	0	0	15835	594	21	2	334	2	TCP11	6	35087099	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35897	35087099	136027968	7491	15642											
TCP11	6954	broad.mit.edu	37	chr6	35088610	35088610	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctattcctaaaaagagataGagtactctctaacattataa	4	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35088610	T	T	35088610	1	4	9	0	1	0	0	0	0	0	0	0	15835	957	33	3		3	TCP11	6	35088610	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1511	35088610	136026457	7492	15643											
TCP11	6954	broad.mit.edu	37	chr6	35088658	35088658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaaggtaatacctttccCactcctgccctcacattata	3	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35088658	A	A	35088658	1	1	9	0	1	0	0	0	0	0	0	0	15835	609	21	2		2	TCP11	6	35088658	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	35088658	136026409	7493	15644											
SCUBE3	222663	broad.mit.edu	37	chr6	35213789	35213789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccattgccttcactgccCgttccaggaagctctggatc	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35213789	A	A	35213789	3	1	9	1	0	0	0	0	1	0	0	0	14059	652	23	1	2746	1	SCUBE3	6	35213789	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125131	35213789	135901278	7494	15645											
ZNF76	7629	broad.mit.edu	37	chr6	35258144	35258144	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggcgtctctacaccacCgctcatcacttaaaggtaag	9	12	3	0	rs148855008		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35258144	A	A	35258144	2	1	9	1	0	0	0	0	0	0	0	1	18264	639	23	1		1	ZNF76	6	35258144	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44355	35258144	135856923	7495	15646											
DEF6	50619	broad.mit.edu	37	chr6	35285904	35285904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactcctaaggcccctttcGggccgtgtgcgaggatccta	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35285904	T	T	35285904	1	4	9	0	1	0	0	0	0	0	0	0	4419	1131	39	1		1	DEF6	6	35285904	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27760	35285904	135829163	7496	15647											
FANCE	2178	broad.mit.edu	37	chr6	35423999	35423999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacataagtcactggaatccCtggcagatggaggaagtgca	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35423999	A	A	35423999	3	1	9	1	0	0	0	0	1	0	0	0	5723	680	24	2	730	2	FANCE	6	35423999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138095	35423999	135691068	7497	15648											
FANCE	2178	broad.mit.edu	37	chr6	35424187	35424187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagtggtggctttatcCatggggaaggctgcttggga	16	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35424187	A	A	35424187	1	1	9	0	1	0	0	0	0	0	0	0	5723	609	21	2		2	FANCE	6	35424187	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	188	35424187	135690880	7498	15649											
TEAD3	7005	broad.mit.edu	37	chr6	35443241	35443241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacggtacacaaagcgccCgttctccagcctggcatact	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35443241	A	A	35443241	3	1	9	1	0	0	0	0	1	0	0	0	15862	652	23	1	249	1	TEAD3	6	35443241	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19054	35443241	135671826	7499	15650											
TEAD3	7005	broad.mit.edu	37	chr6	35444194	35444194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagcagctgaggggagcGgggccaggggctcataacct	18	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35444194	T	T	35444194	3	4	9	1	0	0	0	0	1	0	0	0	15862	1116	39	1	716	1	TEAD3	6	35444194	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	953	35444194	135670873	7500	15651											
TULP1	7287	broad.mit.edu	37	chr6	35467940	35467940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcactagcctggggtgccCcaggggagtagacagggaga	17	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35467940	A	A	35467940	1	1	9	0	1	0	0	0	0	0	0	0	16899	638	22	2		2	TULP1	6	35467940	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23746	35467940	135647127	7501	15652											
TULP1	7287	broad.mit.edu	37	chr6	35478681	35478681	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctccttcaggtctgcGgagctcttctctctcagggg	10	15	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35478681	T	T	35478681	2	4	9	1	0	0	0	0	0	0	0	1	16899	1103	39	1		1	TULP1	6	35478681	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10741	35478681	135636386	7502	15653											
FKBP5	2289	broad.mit.edu	37	chr6	35544941	35544941	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccttggctgactcaaactCgttcatgagcagctgggctt	10	12	2	2	rs143893856		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35544941	A	A	35544941	4	1	9	1	0	0	0	0	0	1	0	0	5968	893	31	3	285	3	FKBP5	6	35544941	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66260	35544941	135570126	7503	15654											
FKBP5	2289	broad.mit.edu	37	chr6	35554823	35554823	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacacaccttgaagtatacGgttcccttctctttgacaat	5	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35554823	T	T	35554823	2	4	9	1	0	0	0	0	0	0	0	1	5968	1116	39	1		1	FKBP5	6	35554823	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9882	35554823	135560244	7504	15655											
C6orf81	221481	broad.mit.edu	37	chr6	35705923	35705923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgatcctgcacagtatcactCgctgtgtgtacttgctggag	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35705923	A	A	35705923	3	1	9	1	0	0	0	0	1	0	0	0	2396	884	31	3	370	3	C6orf81	6	35705923	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151100	35705923	135409144	7505	15656											
C6orf81	221481	broad.mit.edu	37	chr6	35714984	35714984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagtaaagtcagatactGggatagtggtgatcacctgt	13	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35714984	T	T	35714984	1	4	9	0	1	0	0	0	0	0	0	0	2396	1363	47	2		2	C6orf81	6	35714984	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9061	35714984	135400083	7506	15657											
SRPK1	6732	broad.mit.edu	37	chr6	35806516	35806516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcttgtgaatatttccCactgagggaaaagcgtcttg	11	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35806516	A	A	35806516	1	1	9	0	1	0	0	0	0	0	0	0	15277	609	21	2		2	SRPK1	6	35806516	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	91532	35806516	135308551	7507	15658											
SLC26A8	116369	broad.mit.edu	37	chr6	35911951	35911951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttcaggctccagctccCgatccaggtctaggtccaga	9	15	2	1	rs138910476	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35911951	A	A	35911951	3	1	9	1	0	0	0	0	1	0	0	0	14637	652	23	1	277	1	SLC26A8	6	35911951	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	105435	35911951	135203116	7508	15659											
SLC26A8	116369	broad.mit.edu	37	chr6	35922951	35922951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttaatacgactaaccccCgtgaatccacgtagtgtacc	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35922951	A	A	35922951	3	1	9	1	0	0	0	0	1	0	0	0	14637	652	23	1	718	1	SLC26A8	6	35922951	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11000	35922951	135192116	7509	15660											
SLC26A8	116369	broad.mit.edu	37	chr6	35980005	35980005	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacaggcttcatatcttcCttaccttggggaacttgcac	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35980005	A	A	35980005	1	1	9	0	1	0	0	0	0	0	0	0	14637	696	24	2		2	SLC26A8	6	35980005	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57054	35980005	135135062	7510	15661											
MAPK14	1432	broad.mit.edu	37	chr6	36068011	36068011	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctgacaggaacacccccCgcttatctcattaacaggat	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36068011	A	A	36068011	2	1	9	1	0	0	0	0	0	0	0	1	9368	639	23	1		1	MAPK14	6	36068011	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88006	36068011	135047056	7511	15662											
BRPF3	27154	broad.mit.edu	37	chr6	36181664	36181664	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttctaatagatgactcCaaactgcctcctccgccaac	4	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36181664	A	A	36181664	2	1	9	1	0	0	0	0	0	0	0	1	1530	581	21	2		2	BRPF3	6	36181664	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113653	36181664	134933403	7512	15663											
BRPF3	27154	broad.mit.edu	37	chr6	36181845	36181845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatcaccactgcagctaGggaatgagcctttgcaacgc	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36181845	T	T	36181845	3	4	9	1	0	0	0	0	1	0	0	0	1530	1000	35	2	2697	2	BRPF3	6	36181845	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	181	36181845	134933222	7513	15664											
BRPF3	27154	broad.mit.edu	37	chr6	36185729	36185729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaaacacaccgaaagcGggtctgactctgaatgtagt	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36185729	T	T	36185729	3	4	9	1	0	0	0	0	1	0	0	0	1530	1116	39	1	3055	1	BRPF3	6	36185729	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3884	36185729	134929338	7514	15665											
BRPF3	27154	broad.mit.edu	37	chr6	36196743	36196743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcccatccctgtcccccCgctggacgtgctgaagctgg	11	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36196743	A	A	36196743	3	1	9	1	0	0	0	0	1	0	0	0	1530	652	23	1	3386	1	BRPF3	6	36196743	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11014	36196743	134918324	7515	15666											
PNPLA1	285848	broad.mit.edu	37	chr6	36259267	36259267	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctccatgtgagcctcaccCgcttaacggacggggagaat	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36259267	G	G	36259267	3	3	9	1	0	0	0	0	1	0	0	0	12259	652	23	4	382	4	PNPLA1	6	36259267	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62524	36259267	134855800	7516	15667											
C6orf222	389384	broad.mit.edu	37	chr6	36296622	36296622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaggtgctgctgcagccCgctctaggcttaaccaaaaa	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36296622	A	A	36296622	1	1	9	0	1	0	0	0	0	0	0	0	2379	667	23	1		1	C6orf222	6	36296622	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	37355	36296622	134818445	7517	15668											
ETV7	51513	broad.mit.edu	37	chr6	36334398	36334398	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctgccccatcggtaccGggtgcctggagtccacctgc	12	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36334398	T	T	36334398	1	4	9	0	1	0	0	0	0	0	0	0	5326	1131	39	1		1	ETV7	6	36334398	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	37776	36334398	134780669	7518	15669											
ETV7	51513	broad.mit.edu	37	chr6	36353396	36353396	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgcacgtgggtgcctagGggaggcatggctgccacagg	18	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36353396	T	T	36353396	2	4	9	1	0	0	0	0	0	0	0	1	5326	1219	43	2		2	ETV7	6	36353396	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18998	36353396	134761671	7519	15670											
KCTD20	222658	broad.mit.edu	37	chr6	36438024	36438024	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacttatcctctaggtccCaggaatgaaggtacagtgat	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36438024	A	A	36438024	2	1	9	1	0	0	0	0	0	0	0	1	8178	581	21	2		2	KCTD20	6	36438024	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84628	36438024	134677043	7520	15671											
KCTD20	222658	broad.mit.edu	37	chr6	36438063	36438063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaactcttgacttaatttGgggggctttccaatactaga	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36438063	T	T	36438063	1	4	9	0	1	0	0	0	0	0	0	0	8178	1363	47	2		2	KCTD20	6	36438063	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	36438063	134677004	7521	15672											
KCTD20	222658	broad.mit.edu	37	chr6	36454521	36454521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactggggctgggaaagcatGggacagggactggtcacttc	17	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36454521	T	T	36454521	1	4	9	0	1	0	0	0	0	0	0	0	8178	1363	47	2		2	KCTD20	6	36454521	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16458	36454521	134660546	7522	15673											
KCTD20	222658	broad.mit.edu	37	chr6	36454915	36454915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgaccggctaaatgcccCactttctcagatggcttcta	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36454915	A	A	36454915	3	1	9	1	0	0	0	0	1	0	0	0	8178	594	21	2	1249	2	KCTD20	6	36454915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	394	36454915	134660152	7523	15674											
STK38	11329	broad.mit.edu	37	chr6	36475355	36475355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagtcctgtgcaaagacCaaagtcagaaagtttcacat	7	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36475355	A	A	36475355	3	1	9	1	0	0	0	0	1	0	0	0	15421	594	21	2	731	2	STK38	6	36475355	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20440	36475355	134639712	7524	15675											
SFRS3	6428	broad.mit.edu	37	chr6	36569489	36569489	+	Missense_Mutation	SNP	C	A	A													ttttttgcttgtttaggtccCtttctagagataggagaaga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36569489	A	A	36569489	3	1	9	1	0	0	0	0	1	0	0	0	14291	681	24	2	399	2	SFRS3	6	36569489	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94134	36569489	134545578	7525	15676	98	2									
SFRS3	6428	broad.mit.edu	37	chr6	36569496	36569496	+	Missense_Mutation	SNP	G	T	T													cttgtttaggtccctttctaGagataggagaagagagagat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36569496	T	T	36569496	3	4	9	1	0	0	0	0	1	0	0	0	14291	942	33	3	406	3	SFRS3	6	36569496	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	36569496	134545571	7526	15677	98	2									
SFRS3	6428	broad.mit.edu	37	chr6	36569549	36569549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaatcacaagccgtccCgatccttctctaggtctcgt	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36569549	A	A	36569549	2	1	9	1	0	0	0	0	0	0	0	1	14291	644	23	1		1	SFRS3	6	36569549	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	36569549	134545518	7527	15678											
CDKN1A	1026	broad.mit.edu	37	chr6	36653580	36653580	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagaggaagccctaatcCgcccacaggaagcctgcagt	10	14	0	1	rs139304346	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36653580	A	A	36653580	1	1	9	0	1	0	0	0	0	0	0	0	3188	667	23	1		1	CDKN1A	6	36653580	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	84031	36653580	134461487	7528	15679											
CPNE5	57699	broad.mit.edu	37	chr6	36710250	36710250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcggtccacgtagtccCggaagggtacaaactggcaa	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36710250	A	A	36710250	3	1	9	1	0	0	0	0	1	0	0	0	3847	652	23	1	208	1	CPNE5	6	36710250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56670	36710250	134404817	7529	15680											
CPNE5	57699	broad.mit.edu	37	chr6	36715911	36715911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggccagagagtatgaGggtcatggtcccagccaggg	17	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36715911	T	T	36715911	1	4	9	0	1	0	0	0	0	0	0	0	3847	1015	35	2		2	CPNE5	6	36715911	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5661	36715911	134399156	7530	15681											
PI16	221476	broad.mit.edu	37	chr6	36930832	36930832	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccttcttccctagcaacGgggattccggctttcttggt	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36930832	T	T	36930832	2	4	9	1	0	0	0	0	0	0	0	1	11964	1103	39	1		1	PI16	6	36930832	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	214921	36930832	134184235	7531	15682											
PI16	221476	broad.mit.edu	37	chr6	36931675	36931675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtgtggggccctctcctGggactactgctcctgcctcc	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36931675	T	T	36931675	2	4	9	1	0	0	0	0	0	0	0	1	11964	1335	47	2		2	PI16	6	36931675	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	843	36931675	134183392	7532	15683											
TBC1D22B	55633	broad.mit.edu	37	chr6	37254820	37254820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggacgaatcctctcattcCgttgttccagcaaccacttg	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37254820	A	A	37254820	3	1	9	1	0	0	0	0	1	0	0	0	15731	652	23	1	865	1	TBC1D22B	6	37254820	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	323145	37254820	133860247	7533	15684											
TBC1D22B	55633	broad.mit.edu	37	chr6	37281572	37281572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagagtccatgttcatcctGggctctgtgtcatttgcagg	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37281572	T	T	37281572	1	4	9	0	1	0	0	0	0	0	0	0	15731	1363	47	2		2	TBC1D22B	6	37281572	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26752	37281572	133833495	7534	15685											
TBC1D22B	55633	broad.mit.edu	37	chr6	37284560	37284560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaacaacctgcttatgcGggagcttcctcttcgctgca	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37284560	T	T	37284560	3	4	9	1	0	0	0	0	1	0	0	0	15731	1116	39	1	1289	1	TBC1D22B	6	37284560	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2988	37284560	133830507	7535	15686											
TBC1D22B	55633	broad.mit.edu	37	chr6	37284586	37284586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcttcgctgcaccatcCgcctgtgggacacatatcag	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37284586	A	A	37284586	3	1	9	1	0	0	0	0	1	0	0	0	15731	652	23	1	1315	1	TBC1D22B	6	37284586	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	37284586	133830481	7536	15687											
FTSJD2	23070	broad.mit.edu	37	chr6	37420817	37420817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgaggttctgattctctGggcagagcgtgtttgatgtc	13	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37420817	T	T	37420817	1	4	9	0	1	0	0	0	0	0	0	0	6151	1363	47	2		2	FTSJD2	6	37420817	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	136231	37420817	133694250	7537	15688											
FTSJD2	23070	broad.mit.edu	37	chr6	37446174	37446174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatgcacgtaccttctcGgggaaatcaggttggagatg	12	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37446174	T	T	37446174	1	4	9	0	1	0	0	0	0	0	0	0	6151	1131	39	1		1	FTSJD2	6	37446174	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25357	37446174	133668893	7538	15689											
FTSJD2	23070	broad.mit.edu	37	chr6	37446266	37446266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaccggcactttgtaccCatgggcctctacatcgtcag	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37446266	A	A	37446266	2	1	9	1	0	0	0	0	0	0	0	1	6151	581	21	2		2	FTSJD2	6	37446266	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	37446266	133668801	7539	15690											
MDGA1	266727	broad.mit.edu	37	chr6	37622577	37622577	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggaaaatgcctgtaccCgtggtgttggtgagccggaa	17	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37622577	A	A	37622577	2	1	9	1	0	0	0	0	0	0	0	1	9499	666	23	1		1	MDGA1	6	37622577	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	176311	37622577	133492490	7540	15691											
BTBD9	114781	broad.mit.edu	37	chr6	38312853	38312853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcactgtgttgtgagtccCaacaattcgaatatacctga	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38312853	A	A	38312853	3	1	9	1	0	0	0	0	1	0	0	0	1558	594	21	2	687	2	BTBD9	6	38312853	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	690276	38312853	132802214	7541	15692											
BTBD9	114781	broad.mit.edu	37	chr6	38560269	38560269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtacacctgcactacacGgttctgtagtagctttgcgg	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38560269	T	T	38560269	1	4	9	0	1	0	0	0	0	0	0	0	1558	1131	39	1		1	BTBD9	6	38560269	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	247416	38560269	132554798	7542	15693											
DNAH8	1769	broad.mit.edu	37	chr6	38743672	38743672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacattctggatccaagaaGgacagaatttgacacagatt	9	7	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38743672	T	T	38743672	3	4	9	1	0	0	0	0	1	0	0	0	4647	1000	35	2	1290	2	DNAH8	6	38743672	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	183403	38743672	132371395	7543	15694											
DNAH8	1769	broad.mit.edu	37	chr6	38850693	38850693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttattatataggtgattgGgagcactggaataagaaact	10	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38850693	T	T	38850693	3	4	9	1	0	0	0	0	1	0	0	0	4647	1241	43	2	7413	2	DNAH8	6	38850693	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107021	38850693	132264374	7544	15695											
DNAH8	1769	broad.mit.edu	37	chr6	38877369	38877369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactatggactggttcagcCgctggccaagggaggctctg	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38877369	A	A	38877369	3	1	9	1	0	0	0	0	1	0	0	0	4647	652	23	1	9180	1	DNAH8	6	38877369	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26676	38877369	132237698	7545	15696											
DNAH8	1769	broad.mit.edu	37	chr6	38897325	38897325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatattttcgcacacacttGgaggacagcctttccttggg	9	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38897325	T	T	38897325	3	4	9	1	0	0	0	0	1	0	0	0	4647	1339	47	2	10788	2	DNAH8	6	38897325	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19956	38897325	132217742	7546	15697											
DNAH8	1769	broad.mit.edu	37	chr6	38919171	38919171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagaagtacacagaacCagttatcttaaatctggaga	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38919171	A	A	38919171	3	1	9	1	0	0	0	0	1	0	0	0	4647	594	21	2	11985	2	DNAH8	6	38919171	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21846	38919171	132195896	7547	15698											
DNAH8	1769	broad.mit.edu	37	chr6	38950160	38950160	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttaggatggaatattccCtacgaattcaattctgctga	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38950160	A	A	38950160	2	1	9	1	0	0	0	0	0	0	0	1	4647	668	24	2		2	DNAH8	6	38950160	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30989	38950160	132164907	7548	15699											
C6orf64	55776	broad.mit.edu	37	chr6	39073351	39073351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcagggcctcgtgtccCgacgtacatccaatagaaca	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39073351	A	A	39073351	3	1	9	1	0	0	0	0	1	0	0	0	2393	652	23	1	146	1	C6orf64	6	39073351	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123191	39073351	132041716	7549	15700											
KCNK5	8645	broad.mit.edu	37	chr6	39159217	39159217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcccgtctccccaccccCgcttgtcttcatggccttct	8	20	4	0	rs142417837		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39159217	A	A	39159217	3	1	9	1	0	0	0	0	1	0	0	0	8139	652	23	1	554	1	KCNK5	6	39159217	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85866	39159217	131955850	7550	15701											
KCNK16	83795	broad.mit.edu	37	chr6	39285675	39285675	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggatgcccaacagggcatAgaagacacagaagacctgac	12	11	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39285675	G	G	39285675	3	3	9	1	0	0	0	0	1	0	0	0	8133	420	15	5	948	5	KCNK16	6	39285675	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	126458	39285675	131829392	7551	15702											
DAAM2	23500	broad.mit.edu	37	chr6	39856576	39856576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaaggggaactgaaccCagcgggcagccacgcccctt	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39856576	A	A	39856576	1	1	9	0	1	0	0	0	0	0	0	0	4249	609	21	2		2	DAAM2	6	39856576	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	570901	39856576	131258491	7552	15703											
DAAM2	23500	broad.mit.edu	37	chr6	39869102	39869102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggccttgatgcacttcGgggagcatgacagcaagatg	13	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39869102	T	T	39869102	3	4	9	1	0	0	0	0	1	0	0	0	4249	1116	39	1	2923	1	DAAM2	6	39869102	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12526	39869102	131245965	7553	15704											
MOCS1	4337	broad.mit.edu	37	chr6	39880757	39880757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacttgttgcctgtattcGggatgggggaaggcaagggg	17	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39880757	T	T	39880757	1	4	9	0	1	0	0	0	0	0	0	0	9784	1131	39	1		1	MOCS1	6	39880757	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11655	39880757	131234310	7554	15705											
UNC5CL	222643	broad.mit.edu	37	chr6	40996273	40996273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagctcctgcaggctgcCgttctgctcctcaaacaact	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40996273	A	A	40996273	3	1	9	1	0	0	0	0	1	0	0	0	17120	652	23	1	164	1	UNC5CL	6	40996273	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1115516	40996273	130118794	7555	15706											
TREML2	79865	broad.mit.edu	37	chr6	41166018	41166018	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccctttcacccagactcGggcaaagccaggctcacact	10	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41166018	T	T	41166018	2	4	9	1	0	0	0	0	0	0	0	1	16597	1124	39	1		1	TREML2	6	41166018	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	169745	41166018	129949049	7556	15707											
FOXP4	116113	broad.mit.edu	37	chr6	41533672	41533672	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaatggtgagatgagtccCgcagagctgctgcacttcca	12	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41533672	A	A	41533672	2	1	9	1	0	0	0	0	0	0	0	1	6089	639	23	1		1	FOXP4	6	41533672	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	367654	41533672	129581395	7557	15708											
FOXP4	116113	broad.mit.edu	37	chr6	41556478	41556478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagatccaggtgtggccCggaagatgctggggagggac	19	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41556478	A	A	41556478	1	1	9	0	1	0	0	0	0	0	0	0	6089	667	23	1		1	FOXP4	6	41556478	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22806	41556478	129558589	7558	15709											
MDFI	4188	broad.mit.edu	37	chr6	41617309	41617309	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgagcatagctctgggggccGaatgacccccacccttttcc	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41617309	T	T	41617309	1	4	9	0	1	0	0	0	0	0	0	0	9497	1073	37	3		3	MDFI	6	41617309	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	60831	41617309	129497758	7559	15710											
USP49	25862	broad.mit.edu	37	chr6	41774539	41774539	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatggctagcgggtgtccCgtctcctcaaagtgtttcag	11	12	3	0	rs149616993	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41774539	A	A	41774539	2	1	9	1	0	0	0	0	0	0	0	1	17207	639	23	1		1	USP49	6	41774539	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	157230	41774539	129340528	7560	15711											
BYSL	705	broad.mit.edu	37	chr6	41899508	41899508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctggcacttgtaccctccGggaagccatcattgtgggta	12	11	2	0	rs138775421		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41899508	T	T	41899508	3	4	9	1	0	0	0	0	1	0	0	0	1586	1116	39	1	930	1	BYSL	6	41899508	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	124969	41899508	129215559	7561	15712											
CCND3	896	broad.mit.edu	37	chr6	41905033	41905033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaaggcctgtcggtcacGgggcagagagagccggtgca	17	11	1	2	rs138467679		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41905033	T	T	41905033	3	4	9	1	0	0	0	0	1	0	0	0	2948	1116	39	1	376	1	CCND3	6	41905033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5525	41905033	129210034	7562	15713											
GUCA1A	2978	broad.mit.edu	37	chr6	42141500	42141500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctcaagaacctgagccCgtcggccagccagtacgtgg	13	15	1	2	rs104893968	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42141500	A	A	42141500	3	1	9	1	0	0	0	0	1	0	0	0	6953	652	23	1	151	1	GUCA1A	6	42141500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	236467	42141500	128973567	7563	15714											
TRERF1	55809	broad.mit.edu	37	chr6	42196272	42196272	+	Silent	SNP	G	T	T													agcagccccggcgcccccacGggccccgtagtcctctcaat					rs150908395		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42196272	T	T	42196272	2	4	9	1	0	0	0	0	0	0	0	1	16599	1103	39	1		1	TRERF1	6	42196272	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	54772	42196272	128918795	7564	15715	99	2									
TRERF1	55809	broad.mit.edu	37	chr6	42196278	42196278	+	Silent	SNP	C	A	A													cccggcgcccccacgggcccCgtagtcctctcaatcgtggc					rs146605293		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42196278	A	A	42196278	2	1	9	1	0	0	0	0	0	0	0	1	16599	639	23	1		1	TRERF1	6	42196278	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6	42196278	128918789	7565	15716	99	2									
TRERF1	55809	broad.mit.edu	37	chr6	42196320	42196320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatctcagctgcaaaagcCgccttctgagccttttgcct	8	15	2	1	rs144032419	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42196320	A	A	42196320	2	1	9	1	0	0	0	0	0	0	0	1	16599	639	23	1		1	TRERF1	6	42196320	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	42196320	128918747	7566	15717											
TRERF1	55809	broad.mit.edu	37	chr6	42196408	42196408	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttgatcttgaagaagactCtaaaaataaagaaagagagg	9	3	2	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42196408	A	A	42196408	1	1	9	0	1	0	0	0	0	0	0	0	16599	927	32	3		3	TRERF1	6	42196408	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	42196408	128918659	7567	15718											
TRERF1	55809	broad.mit.edu	37	chr6	42232417	42232417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcacacgacctagaaaGgaccgggaactggctcctgc	12	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42232417	T	T	42232417	1	4	9	0	1	0	0	0	0	0	0	0	16599	1015	35	2		2	TRERF1	6	42232417	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36009	42232417	128882650	7568	15719											
UBR2	23304	broad.mit.edu	37	chr6	42574342	42574342	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacaggggcgtaggtctgttCgatatggagattttcagtat	13	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42574342	A	A	42574342	2	1	9	1	0	0	0	0	0	0	0	1	17028	876	31	3		3	UBR2	6	42574342	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	341925	42574342	128540725	7569	15720											
UBR2	23304	broad.mit.edu	37	chr6	42637935	42637935	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggatcctcgtgttccCataatgtgttggggtagctg	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42637935	A	A	42637935	2	1	9	1	0	0	0	0	0	0	0	1	17028	581	21	2		2	UBR2	6	42637935	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63593	42637935	128477132	7570	15721											
UBR2	23304	broad.mit.edu	37	chr6	42657418	42657418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggactcaggtaagaaccCatcctgagttagctaactca	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42657418	A	A	42657418	1	1	9	0	1	0	0	0	0	0	0	0	17028	609	21	2		2	UBR2	6	42657418	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19483	42657418	128457649	7571	15722											
KIAA0240	23506	broad.mit.edu	37	chr6	42797122	42797122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttctgcaagctcacccCagggctcagtagttggtcca	10	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42797122	A	A	42797122	3	1	9	1	0	0	0	0	1	0	0	0	8234	595	21	2	1065	2	KIAA0240	6	42797122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	139704	42797122	128317945	7572	15723											
KIAA0240	23506	broad.mit.edu	37	chr6	42797389	42797389	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctggccaagtggcctcaGagcatgtcatgttgaacaga	11	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42797389	T	T	42797389	4	4	9	1	0	0	0	0	0	1	0	0	8234	943	33	3	1332	3	KIAA0240	6	42797389	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	267	42797389	128317678	7573	15724											
KIAA0240	23506	broad.mit.edu	37	chr6	42797482	42797482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaccagaatactgctgtcCacttagtgtctgggcagaca	9	11	1	2	rs150278376	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42797482	A	A	42797482	3	1	9	1	0	0	0	0	1	0	0	0	8234	594	21	2	1425	2	KIAA0240	6	42797482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	42797482	128317585	7574	15725											
KIAA0240	23506	broad.mit.edu	37	chr6	42823608	42823608	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaggtggagagtcattcGggaggacaaaaaaggcctgc	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42823608	T	T	42823608	2	4	9	1	0	0	0	0	0	0	0	1	8234	1103	39	1		1	KIAA0240	6	42823608	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26126	42823608	128291459	7575	15726											
KIAA0240	23506	broad.mit.edu	37	chr6	42830320	42830320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaagagcttccctgtccCgagacaagcgtttggcactt	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42830320	A	A	42830320	2	1	9	1	0	0	0	0	0	0	0	1	8234	644	23	1		1	KIAA0240	6	42830320	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6712	42830320	128284747	7576	15727											
CNPY3	10695	broad.mit.edu	37	chr6	42903387	42903387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgcacaaggagaggacCggcagcaatcgatttgccaa	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42903387	A	A	42903387	2	1	9	1	0	0	0	0	0	0	0	1	3661	639	23	1		1	CNPY3	6	42903387	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	73067	42903387	128211680	7577	15728											
PEX6	5190	broad.mit.edu	37	chr6	42937742	42937742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgcaggaaaaaggccCaatgaaccccagatccagag	9	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42937742	A	A	42937742	1	1	9	0	1	0	0	0	0	0	0	0	11845	609	21	2		2	PEX6	6	42937742	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	34355	42937742	128177325	7578	15729											
PPP2R5D	5528	broad.mit.edu	37	chr6	42974730	42974730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgacttcgtgtcagaccCactcagtgacctcaaattca	6	13	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42974730	A	A	42974730	3	1	9	1	0	0	0	0	1	0	0	0	12496	594	21	2	418	2	PPP2R5D	6	42974730	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36988	42974730	128140337	7579	15730											
PPP2R5D	5528	broad.mit.edu	37	chr6	42976160	42976160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacaagatgttcctcatcCgtgtcctacttccccttcac	5	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42976160	A	A	42976160	3	1	9	1	0	0	0	0	1	0	0	0	12496	652	23	1	1007	1	PPP2R5D	6	42976160	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1430	42976160	128138907	7580	15731											
KLHDC3	116138	broad.mit.edu	37	chr6	42984967	42984967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacctggagggcgggcccCgcagggtgaaccatgctgca	16	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42984967	A	A	42984967	3	1	9	1	0	0	0	0	1	0	0	0	8428	652	23	1	39	1	KLHDC3	6	42984967	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8807	42984967	128130100	7581	15732											
KLHDC3	116138	broad.mit.edu	37	chr6	42985614	42985614	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcacaagtggttcacacccCgagtgtcagggacagttcct	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42985614	A	A	42985614	2	1	9	1	0	0	0	0	0	0	0	1	8428	644	23	1		1	KLHDC3	6	42985614	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	647	42985614	128129453	7582	15733											
KLHDC3	116138	broad.mit.edu	37	chr6	42985885	42985885	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctcttcctactcaggcGgactgtttttccaatgacat	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42985885	T	T	42985885	2	4	9	1	0	0	0	0	0	0	0	1	8428	1103	39	1		1	KLHDC3	6	42985885	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	271	42985885	128129182	7583	15734											
KLHDC3	116138	broad.mit.edu	37	chr6	42986954	42986954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcaaggtccctgtctttGggtggtgatatccaggactg	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42986954	T	T	42986954	1	4	9	0	1	0	0	0	0	0	0	0	8428	1363	47	2		2	KLHDC3	6	42986954	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1069	42986954	128128113	7584	15735											
CUL7	9820	broad.mit.edu	37	chr6	43006230	43006230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaataaatgctgatcaCtcactcagtggagagcccac	8	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43006230	A	A	43006230	1	1	9	0	1	0	0	0	0	0	0	0	4093	580	20	3		3	CUL7	6	43006230	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19276	43006230	128108837	7585	15736											
CUL7	9820	broad.mit.edu	37	chr6	43006662	43006662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaactgcagctcagccCagcccagccacgtccactgc	7	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43006662	A	A	43006662	3	1	9	1	0	0	0	0	1	0	0	0	4093	595	21	2	754	2	CUL7	6	43006662	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	432	43006662	128108405	7586	15737											
KLC4	89953	broad.mit.edu	37	chr6	43027875	43027875	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccattctttcctgcatcatcGggcattgtggaggcacccta	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43027875	C	C	43027875	1	2	9	0	1	0	0	0	0	0	0	0	8407	1131	39	4		4	KLC4	6	43027875	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21213	43027875	128087192	7587	15738											
KLC4	89953	broad.mit.edu	37	chr6	43042367	43042367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctgtttcaggtctcccGgggcctcagtgccagcacca	11	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43042367	T	T	43042367	3	4	9	1	0	0	0	0	1	0	0	0	8407	1116	39	1	2002	1	KLC4	6	43042367	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14492	43042367	128072700	7588	15739											
CUL9	23113	broad.mit.edu	37	chr6	43171632	43171632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagcagaattttgctgacCgcttcctccctgatgatgag	10	11	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43171632	A	A	43171632	3	1	9	1	0	0	0	0	1	0	0	0	4094	652	23	1	4140	1	CUL9	6	43171632	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129265	43171632	127943435	7589	15740											
CUL9	23113	broad.mit.edu	37	chr6	43172164	43172164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagagagagacctctcGgaaccccttgagtcgagcag	12	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43172164	T	T	43172164	3	4	9	1	0	0	0	0	1	0	0	0	4094	1116	39	1	4304	1	CUL9	6	43172164	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	532	43172164	127942903	7590	15741											
C6orf108	10591	broad.mit.edu	37	chr6	43193601	43193601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagccatctgctgctcccCggatcatggccgaaagcact	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43193601	A	A	43193601	3	1	9	1	0	0	0	0	1	0	0	0	2343	652	23	1	133	1	C6orf108	6	43193601	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21437	43193601	127921466	7591	15742											
ZNF318	24149	broad.mit.edu	37	chr6	43309879	43309879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagttatcttgtcagtgCgctttatggcatcttgcttg	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43309879	A	A	43309879	3	1	9	1	0	0	0	0	1	0	0	0	17962	768	27	3	3504	3	ZNF318	6	43309879	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116278	43309879	127805188	7592	15743											
ZNF318	24149	broad.mit.edu	37	chr6	43323509	43323509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctacgtcgccttttttcCtgtgtactggtagaatcagc	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43323509	A	A	43323509	3	1	9	1	0	0	0	0	1	0	0	0	17962	680	24	2	5304	2	ZNF318	6	43323509	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13630	43323509	127791558	7593	15744											
ZNF318	24149	broad.mit.edu	37	chr6	43325504	43325504	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcatcagtcaggtcatccCtgaggaaaaagagaagcatc	9	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43325504	A	A	43325504	5	1	9	1	0	0	0	0	0	0	1	0	17962	695	24	2	6323	2	ZNF318	6	43325504	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	1995	43325504	127789563	7594	15745											
YIPF3	25844	broad.mit.edu	37	chr6	43480933	43480933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgcccatcagggtgccCtcccgctgtggggtgaaggc	16	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43480933	A	A	43480933	3	1	9	1	0	0	0	0	1	0	0	0	17606	680	24	2	528	2	YIPF3	6	43480933	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	155429	43480933	127634134	7595	15746											
POLR1C	9533	broad.mit.edu	37	chr6	43487384	43487384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctggaggttggggttacGgggataggtagggggtctgt	20	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43487384	T	T	43487384	1	4	9	0	1	0	0	0	0	0	0	0	12306	1131	39	1		1	POLR1C	6	43487384	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6451	43487384	127627683	7596	15747											
XPO5	57510	broad.mit.edu	37	chr6	43495393	43495393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattaggtccatgacttctcGggttaacatcctcaccagtt	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43495393	T	T	43495393	2	4	9	1	0	0	0	0	0	0	0	1	17574	1124	39	1		1	XPO5	6	43495393	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8009	43495393	127619674	7597	15748											
XPO5	57510	broad.mit.edu	37	chr6	43533405	43533405	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagatactcactgtgcggcGgagagtatataatgcatggc	12	7	1	2	rs118012171	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43533405	T	T	43533405	2	4	9	1	0	0	0	0	0	0	0	1	17574	1103	39	1		1	XPO5	6	43533405	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38012	43533405	127581662	7598	15749											
GTPBP2	54676	broad.mit.edu	37	chr6	43591606	43591606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatctctaaacagactctGggtttggtctgaagcagccc	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43591606	T	T	43591606	1	4	9	0	1	0	0	0	0	0	0	0	6945	1363	47	2		2	GTPBP2	6	43591606	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	58201	43591606	127523461	7599	15750											
VEGFA	7422	broad.mit.edu	37	chr6	43746204	43746204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctttccagattatgcGgatcaaacctcaccaaggcc	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43746204	T	T	43746204	3	4	9	1	0	0	0	0	1	0	0	0	17277	1116	39	1	877	1	VEGFA	6	43746204	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	154598	43746204	127368863	7600	15751											
MRPL14	64928	broad.mit.edu	37	chr6	44081908	44081908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtccaccactcgtaccCgcgtcatcttctgaatcgca	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44081908	A	A	44081908	3	1	9	1	0	0	0	0	1	0	0	0	9873	652	23	1	331	1	MRPL14	6	44081908	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	335704	44081908	127033159	7601	15752											
TMEM63B	55362	broad.mit.edu	37	chr6	44106170	44106170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagggaggagagaggttcGggttggtgggctggggactc	22	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44106170	T	T	44106170	1	4	9	0	1	0	0	0	0	0	0	0	16314	1131	39	1		1	TMEM63B	6	44106170	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24262	44106170	127008897	7602	15753											
TMEM63B	55362	broad.mit.edu	37	chr6	44115940	44115940	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggctggatgctgcaggccCcagcctggctttccaactag	13	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44115940	T	T	44115940	1	4	9	0	1	0	0	0	0	0	0	0	16314	638	22	4		4	TMEM63B	6	44115940	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9770	44115940	126999127	7603	15754											
TMEM63B	55362	broad.mit.edu	37	chr6	44119578	44119578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggagcacctggtgccCgcaggtgtgtgttcctgccc	15	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44119578	A	A	44119578	1	1	9	0	1	0	0	0	0	0	0	0	16314	667	23	1		1	TMEM63B	6	44119578	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3638	44119578	126995489	7604	15755											
CAPN11	11131	broad.mit.edu	37	chr6	44140950	44140950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtgccttctctgtgccCacaggctgagtgggtcctat	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44140950	A	A	44140950	1	1	9	0	1	0	0	0	0	0	0	0	2650	609	21	2		2	CAPN11	6	44140950	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21372	44140950	126974117	7605	15756											
SLC29A1	2030	broad.mit.edu	37	chr6	44200631	44200631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgcaacattaagcccCgccgctacctgactgtggtc	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44200631	A	A	44200631	3	1	9	1	0	0	0	0	1	0	0	0	14648	652	23	1	1189	1	SLC29A1	6	44200631	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59681	44200631	126914436	7606	15757											
HSP90AB1	3326	broad.mit.edu	37	chr6	44216432	44216432	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttcaggcagaaattgcCcaactcatgtccctcatcat	6	14	4	1	rs150194710	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44216432	A	A	44216432	2	1	9	1	0	0	0	0	0	0	0	1	7471	610	22	2		2	HSP90AB1	6	44216432	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15801	44216432	126898635	7607	15758											
HSP90AB1	3326	broad.mit.edu	37	chr6	44217833	44217833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtacctagaagagaggcGggtcaaagaagtagtgaaga	15	4	1	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44217833	T	T	44217833	3	4	9	1	0	0	0	0	1	0	0	0	7471	1116	39	1	604	1	HSP90AB1	6	44217833	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1401	44217833	126897234	7608	15759											
NFKBIE	4794	broad.mit.edu	37	chr6	44230332	44230332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatgtccaggacctcctGgggcagcaaagccaggcaac	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44230332	T	T	44230332	3	4	9	1	0	0	0	0	1	0	0	0	10475	1357	47	2	672	2	NFKBIE	6	44230332	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12499	44230332	126884735	7609	15760											
AARS2	57505	broad.mit.edu	37	chr6	44273392	44273392	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgccacagcttgtacctGggcctcctcttgggccaacc	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44273392	T	T	44273392	3	4	9	1	0	0	0	0	1	0	0	0	20	1357	47	2	1577	2	AARS2	6	44273392	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43060	44273392	126841675	7610	15761											
SPATS1	221409	broad.mit.edu	37	chr6	44329766	44329766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttgactgtgcagtcccCgaaaaactctcgagtcgtga	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44329766	A	A	44329766	1	1	9	0	1	0	0	0	0	0	0	0	15134	667	23	1		1	SPATS1	6	44329766	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56374	44329766	126785301	7611	15762											
CDC5L	988	broad.mit.edu	37	chr6	44390498	44390498	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaagttaaacattaatccCgaggatggaatggcagacta	10	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44390498	A	A	44390498	2	1	9	1	0	0	0	0	0	0	0	1	3112	639	23	1		1	CDC5L	6	44390498	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60732	44390498	126724569	7612	15763											
CDC5L	988	broad.mit.edu	37	chr6	44390562	44390562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggtaaatgtcaattccCttttaatactcttaaatttt	4	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44390562	A	A	44390562	1	1	9	0	1	0	0	0	0	0	0	0	3112	696	24	2		2	CDC5L	6	44390562	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	44390562	126724505	7613	15764											
SUPT3H	8464	broad.mit.edu	37	chr6	44988338	44988338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgattacccttgctcccCgcagctgagaaacttcagca	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44988338	A	A	44988338	3	1	9	1	0	0	0	0	1	0	0	0	15515	652	23	1	767	1	SUPT3H	6	44988338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	597776	44988338	126126729	7614	15765											
SUPT3H	8464	broad.mit.edu	37	chr6	45290659	45290659	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaagaccaccatgagtcCatggagaaaagccacagtgc	9	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45290659	A	A	45290659	1	1	9	0	1	0	0	0	0	0	0	0	15515	609	21	2		2	SUPT3H	6	45290659	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	302321	45290659	125824408	7615	15766											
RUNX2	860	broad.mit.edu	37	chr6	45399612	45399612	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgtaggtggtagccctcGgagaggtaccagatgggact	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45399612	T	T	45399612	4	4	9	1	0	0	0	0	0	1	0	0	13859	1117	39	1	462	1	RUNX2	6	45399612	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108953	45399612	125715455	7616	15767											
RUNX2	860	broad.mit.edu	37	chr6	45405777	45405777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttacagtagatggacctcGggaacccagaagtaagtact	11	8	0	2	rs104893991		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45405777	T	T	45405777	3	4	9	1	0	0	0	0	1	0	0	0	13859	1116	39	1	704	1	RUNX2	6	45405777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6165	45405777	125709290	7617	15768											
RUNX2	860	broad.mit.edu	37	chr6	45459777	45459777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtatgagagtaggtgtccCgcctcagaacccacggccct	11	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45459777	A	A	45459777	3	1	9	1	0	0	0	0	1	0	0	0	13859	652	23	1	819	1	RUNX2	6	45459777	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54000	45459777	125655290	7618	15769											
RUNX2	860	broad.mit.edu	37	chr6	45480061	45480061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagccagatgacgtcccCgtccatccactctaccaccc	6	20	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45480061	A	A	45480061	3	1	9	1	0	0	0	0	1	0	0	0	13859	652	23	1	976	1	RUNX2	6	45480061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20284	45480061	125635006	7619	15770											
RUNX2	860	broad.mit.edu	37	chr6	45514686	45514686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttacttacaccccgccaGtcacctcaggcatgtccctc	5	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45514686	T	T	45514686	3	4	9	1	0	0	0	0	1	0	0	0	13859	1029	36	3	1256	3	RUNX2	6	45514686	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34625	45514686	125600381	7620	15771											
RUNX2	860	broad.mit.edu	37	chr6	45514888	45514888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccttccagaatgcttcCgccatgcaccaccacctcga	6	18	1	1	rs142108189		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45514888	A	A	45514888	3	1	9	1	0	0	0	0	1	0	0	0	13859	652	23	1	1458	1	RUNX2	6	45514888	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	202	45514888	125600179	7621	15772											
RUNX2	860	broad.mit.edu	37	chr6	45514987	45514987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagccacagcagttcccCaactgttttgaattctagtg	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45514987	A	A	45514987	3	1	9	1	0	0	0	0	1	0	0	0	13859	594	21	2	1557	2	RUNX2	6	45514987	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99	45514987	125600080	7622	15773											
RCAN2	10231	broad.mit.edu	37	chr6	46190823	46190823	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attttttttgacaaacaacaGggggaaaaagcatgataaag	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46190823	C	C	46190823	1	2	9	0	1	0	0	0	0	0	0	0	13277	1015	35	4		4	RCAN2	6	46190823	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	675836	46190823	124924244	7623	15774											
CYP39A1	51302	broad.mit.edu	37	chr6	46620231	46620231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatccagcccttgatgcacGggggtctacgcaaattcttc	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46620231	T	T	46620231	3	4	9	1	0	0	0	0	1	0	0	0	4210	1116	39	1	1368	1	CYP39A1	6	46620231	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	429408	46620231	124494836	7624	15775											
SLC25A27	9481	broad.mit.edu	37	chr6	46623702	46623702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatggtgcgcacagctctaGggatcattgaagaggaaggc	15	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46623702	T	T	46623702	3	4	9	1	0	0	0	0	1	0	0	0	14604	1000	35	2	235	2	SLC25A27	6	46623702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3471	46623702	124491365	7625	15776											
SLC25A27	9481	broad.mit.edu	37	chr6	46623752	46623752	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggcaaggagtgacaccCgccatttacagacacgtagg	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46623752	A	A	46623752	2	1	9	1	0	0	0	0	0	0	0	1	14604	639	23	1		1	SLC25A27	6	46623752	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	46623752	124491315	7626	15777											
TDRD6	221400	broad.mit.edu	37	chr6	46657429	46657429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgatgaggagaatgtgtGgtttctattcctctgccagt	12	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46657429	T	T	46657429	3	4	9	1	0	0	0	0	1	0	0	0	15856	1348	47	2	1566	2	TDRD6	6	46657429	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33677	46657429	124457638	7627	15778											
TDRD6	221400	broad.mit.edu	37	chr6	46659900	46659900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtgttaaaacaaggccCgaatattatgtaggtccacc	8	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46659900	A	A	46659900	2	1	9	1	0	0	0	0	0	0	0	1	15856	639	23	1		1	TDRD6	6	46659900	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2471	46659900	124455167	7628	15779											
TDRD6	221400	broad.mit.edu	37	chr6	46660101	46660101	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttaatgcaatattgccGgggttgtgcattcattgctc	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46660101	T	T	46660101	2	4	9	1	0	0	0	0	0	0	0	1	15856	1103	39	1		1	TDRD6	6	46660101	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	201	46660101	124454966	7629	15780											
TDRD6	221400	broad.mit.edu	37	chr6	46665775	46665775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggaggagatagtgaaccCtgagaatgtctggaatggca	14	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46665775	A	A	46665775	3	1	9	1	0	0	0	0	1	0	0	0	15856	681	24	2	6222	2	TDRD6	6	46665775	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5674	46665775	124449292	7630	15781											
TDRD6	221400	broad.mit.edu	37	chr6	46665800	46665800	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtctggaatggcataccCaaattggataagagtccacc	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46665800	A	A	46665800	2	1	9	1	0	0	0	0	0	0	0	1	15856	581	21	2		2	TDRD6	6	46665800	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	46665800	124449267	7631	15782											
PLA2G7	7941	broad.mit.edu	37	chr6	46684770	46684770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaataaggcccatttcccCgggggattttagtttggcca	12	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46684770	A	A	46684770	3	1	9	1	0	0	0	0	1	0	0	0	12104	652	23	1	1192	1	PLA2G7	6	46684770	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18970	46684770	124430297	7632	15783											
MEP1A	4224	broad.mit.edu	37	chr6	46761091	46761091	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcagggtaaagtctaaacGgtatttatgacaaggtgtgt	12	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46761091	T	T	46761091	1	4	9	0	1	0	0	0	0	0	0	0	9568	1131	39	1		1	MEP1A	6	46761091	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	76321	46761091	124353976	7633	15784											
MEP1A	4224	broad.mit.edu	37	chr6	46801138	46801138	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttttcatgtgtgcagtgGggagaacgatgctatcctgg	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46801138	C	C	46801138	3	2	9	1	0	0	0	0	1	0	0	0	9568	1232	43	4	1514	4	MEP1A	6	46801138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40047	46801138	124313929	7634	15785											
MEP1A	4224	broad.mit.edu	37	chr6	46806747	46806747	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacatgctttcttctacacGggggagcgctgtcaggccgt	14	11	3	0	rs141276985	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46806747	T	T	46806747	2	4	9	1	0	0	0	0	0	0	0	1	9568	1103	39	1		1	MEP1A	6	46806747	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5609	46806747	124308320	7635	15786											
GPR116	221395	broad.mit.edu	37	chr6	46830654	46830654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagcagactgtttattgGggcagagatgcagtcatttc	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46830654	T	T	46830654	3	4	9	1	0	0	0	0	1	0	0	0	6698	1232	43	2	1898	2	GPR116	6	46830654	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23907	46830654	124284413	7636	15787											
GPR116	221395	broad.mit.edu	37	chr6	46839676	46839676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgttgttccagacgaccCgcttgggcactgggttccat	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46839676	A	A	46839676	3	1	9	1	0	0	0	0	1	0	0	0	6698	652	23	1	2769	1	GPR116	6	46839676	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9022	46839676	124275391	7637	15788											
GPR116	221395	broad.mit.edu	37	chr6	46851311	46851311	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaccgctgtttccaagtcGgtcttgtaggacctatagag	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46851311	T	T	46851311	2	4	9	1	0	0	0	0	0	0	0	1	6698	1103	39	1		1	GPR116	6	46851311	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11635	46851311	124263756	7638	15789											
TNFRSF21	27242	broad.mit.edu	37	chr6	47200603	47200603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagccggtctagtttgtcCtcagcctggggaatctcttc	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47200603	A	A	47200603	3	1	9	1	0	0	0	0	1	0	0	0	16418	680	24	2	105	2	TNFRSF21	6	47200603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	349292	47200603	123914464	7639	15790											
CD2AP	23607	broad.mit.edu	37	chr6	47563613	47563613	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagatgaaaaatcaacactGgaacagaaaccttctaaacc	5	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47563613	T	T	47563613	2	4	9	1	0	0	0	0	0	0	0	1	3024	1335	47	2		2	CD2AP	6	47563613	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	363010	47563613	123551454	7640	15791											
CD2AP	23607	broad.mit.edu	37	chr6	47563717	47563717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttctggaacagtgtaccCaaagcgacctgaaaaaccag	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47563717	A	A	47563717	3	1	9	1	0	0	0	0	1	0	0	0	3024	594	21	2	1275	2	CD2AP	6	47563717	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	47563717	123551350	7641	15792											
CD2AP	23607	broad.mit.edu	37	chr6	47591993	47591993	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctggtgttcataatgttcCagggattcagaagcaacgct	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47591993	G	G	47591993	1	3	9	0	1	0	0	0	0	0	0	0	3024	609	21	4		4	CD2AP	6	47591993	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	28276	47591993	123523074	7642	15793											
GPR111	222611	broad.mit.edu	37	chr6	47649693	47649693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgatcctttgcttgtcCattgaggtcctagtctggag	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47649693	A	A	47649693	2	1	9	1	0	0	0	0	0	0	0	1	6693	581	21	2		2	GPR111	6	47649693	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57700	47649693	123465374	7643	15794											
GPR115	221393	broad.mit.edu	37	chr6	47680111	47680111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggactcaactggtgcatctCgcctttctgtagcagcacca	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47680111	A	A	47680111	3	1	9	1	0	0	0	0	1	0	0	0	6697	884	31	3	333	3	GPR115	6	47680111	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30418	47680111	123434956	7644	15795											
GPR115	221393	broad.mit.edu	37	chr6	47680330	47680330	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttgtctgataatgttactCgagagaaaatgaaggtattc	9	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47680330	A	A	47680330	2	1	9	1	0	0	0	0	0	0	0	1	6697	876	31	3		3	GPR115	6	47680330	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	219	47680330	123434737	7645	15796											
GPR115	221393	broad.mit.edu	37	chr6	47682280	47682280	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcccgggtggttgtgacGgagatatcatacatgcgtca	14	8	2	2	rs147818832		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47682280	T	T	47682280	2	4	9	1	0	0	0	0	0	0	0	1	6697	1103	39	1		1	GPR115	6	47682280	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1950	47682280	123432787	7646	15797											
GPR115	221393	broad.mit.edu	37	chr6	47682518	47682518	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtaggatgatgaagtccCgaatgatggtcattggcttt	12	7	1	3	rs146374408		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47682518	A	A	47682518	2	1	9	1	0	0	0	0	0	0	0	1	6697	644	23	1		1	GPR115	6	47682518	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	238	47682518	123432549	7647	15798											
OPN5	221391	broad.mit.edu	37	chr6	47775996	47775996	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccattcccatacagctctCtgtggtgccaaccctacttg	6	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47775996	A	A	47775996	3	1	9	1	0	0	0	0	1	0	0	0	10977	913	32	3	881	3	OPN5	6	47775996	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93478	47775996	123339071	7648	15799											
C6orf138	442213	broad.mit.edu	37	chr6	47846061	47846061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactgtggtgacgtgatccGggttctcttgaatttctatg	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47846061	T	T	47846061	3	4	9	1	0	0	0	0	1	0	0	0	2355	1116	39	1	25	1	C6orf138	6	47846061	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70065	47846061	123269006	7649	15800											
MUT	4594	broad.mit.edu	37	chr6	49412359	49412359	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatatatcttcaccttgcccGagatgcatccactgcaagag	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49412359	T	T	49412359	2	4	9	1	0	0	0	0	0	0	0	1	10085	1057	37	3		3	MUT	6	49412359	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1566298	49412359	121702708	7650	15801											
MUT	4594	broad.mit.edu	37	chr6	49412398	49412398	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaggatatttccatctcCgctagcagcacattcggtta	8	12	1	0	rs78150750		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49412398	A	A	49412398	4	1	9	1	0	0	0	0	0	1	0	0	10085	661	23	1	642	1	MUT	6	49412398	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	49412398	121702669	7651	15802											
MUT	4594	broad.mit.edu	37	chr6	49416553	49416553	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctattctagcttgtcttcGggcagcacattcttcaattc	6	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49416553	T	T	49416553	2	4	9	1	0	0	0	0	0	0	0	1	10085	1124	39	1		1	MUT	6	49416553	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4155	49416553	121698514	7652	15803											
CRISP2	7180	broad.mit.edu	37	chr6	49665620	49665620	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttagactatcttgattGggacagtaggcaattccaca	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49665620	T	T	49665620	2	4	9	1	0	0	0	0	0	0	0	1	3912	1335	47	2		2	CRISP2	6	49665620	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	249067	49665620	121449447	7653	15804											
CRISP3	10321	broad.mit.edu	37	chr6	49698885	49698885	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaacttactgcatagtcCatcgtcacagttatctgggc	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49698885	A	A	49698885	4	1	9	1	0	0	0	0	0	1	0	0	3913	603	21	2	144	2	CRISP3	6	49698885	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33265	49698885	121416182	7654	15805											
PGK2	5232	broad.mit.edu	37	chr6	49753693	49753693	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaaggattttaccttccAgaagctctagactggcaccg	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49753693	G	G	49753693	3	3	9	1	0	0	0	0	1	0	0	0	11886	188	7	5	49	5	PGK2	6	49753693	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	54808	49753693	121361374	7655	15806											
PGK2	5232	broad.mit.edu	37	chr6	49753712	49753712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagctctagactggcacCgcctccagtgctgacatggc	11	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49753712	A	A	49753712	3	1	9	1	0	0	0	0	1	0	0	0	11886	652	23	1	68	1	PGK2	6	49753712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	49753712	121361355	7656	15807											
PGK2	5232	broad.mit.edu	37	chr6	49754237	49754237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatatttttgataagttGgatcttgtctgccactttgg	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49754237	T	T	49754237	3	4	9	1	0	0	0	0	1	0	0	0	11886	1357	47	2	593	2	PGK2	6	49754237	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	525	49754237	121360830	7657	15808											
CRISP1	167	broad.mit.edu	37	chr6	49803098	49803098	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgagtggttgcatccCagataatggacttgtatgtc	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49803098	A	A	49803098	2	1	9	1	0	0	0	0	0	0	0	1	3911	581	21	2		2	CRISP1	6	49803098	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48861	49803098	121311969	7658	15809											
CRISP1	167	broad.mit.edu	37	chr6	49806089	49806089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttaatgcttaatttaaaGgatgtatggttcccagatca	7	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49806089	T	T	49806089	1	4	9	0	1	0	0	0	0	0	0	0	3911	1015	35	2		2	CRISP1	6	49806089	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2991	49806089	121308978	7659	15810											
CRISP1	167	broad.mit.edu	37	chr6	49815847	49815847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttaatttactttcatcaGggtacataacaatccctgtt	5	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49815847	T	T	49815847	1	4	9	0	1	0	0	0	0	0	0	0	3911	1015	35	2		2	CRISP1	6	49815847	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9758	49815847	121299220	7660	15811											
CRISP1	167	broad.mit.edu	37	chr6	49815899	49815899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttagtccaaaggcGggtcatatagatacacactt	7	7	1	1	rs115639859	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49815899	T	T	49815899	1	4	9	0	1	0	0	0	0	0	0	0	3911	1131	39	1		1	CRISP1	6	49815899	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	49815899	121299168	7661	15812											
TFAP2D	83741	broad.mit.edu	37	chr6	50682992	50682992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactaaccaccagtacacccCgctccaccaccagtccttcc	3	22	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50682992	A	A	50682992	3	1	9	1	0	0	0	0	1	0	0	0	15913	652	23	1	209	1	TFAP2D	6	50682992	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	867093	50682992	120432075	7662	15813											
TFAP2D	83741	broad.mit.edu	37	chr6	50683184	50683184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctggacgagcagaggcGggagctgggctgcctcgatg	18	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50683184	T	T	50683184	3	4	9	1	0	0	0	0	1	0	0	0	15913	1116	39	1	401	1	TFAP2D	6	50683184	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	192	50683184	120431883	7663	15814											
TFAP2B	7021	broad.mit.edu	37	chr6	50807826	50807826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccgccctgggatatttaGggcctgggtgctgattatta	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50807826	T	T	50807826	1	4	9	0	1	0	0	0	0	0	0	0	15911	1015	35	2		2	TFAP2B	6	50807826	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	124642	50807826	120307241	7664	15815											
PKHD1	5314	broad.mit.edu	37	chr6	51483835	51483835	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttattatccagaaatactGggaacattctgcctttcagg	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51483835	T	T	51483835	1	4	9	0	1	0	0	0	0	0	0	0	12066	1363	47	2		2	PKHD1	6	51483835	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	676009	51483835	119631232	7665	15816											
PKHD1	5314	broad.mit.edu	37	chr6	51656049	51656049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccaactttcagctcccCgcctgcaatgaccatgcatg	6	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51656049	A	A	51656049	3	1	9	1	0	0	0	0	1	0	0	0	12066	652	23	1	3898	1	PKHD1	6	51656049	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	172214	51656049	119459018	7666	15817											
PKHD1	5314	broad.mit.edu	37	chr6	51712675	51712675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagacccactcgactccCacatcttaggaggatgtcag	9	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51712675	A	A	51712675	3	1	9	1	0	0	0	0	1	0	0	0	12066	594	21	2	4330	2	PKHD1	6	51712675	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56626	51712675	119402392	7667	15818											
PKHD1	5314	broad.mit.edu	37	chr6	51720710	51720710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagagatctgttgatcCaaaggttctcagattgcaat	9	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51720710	A	A	51720710	3	1	9	1	0	0	0	0	1	0	0	0	12066	595	21	2	4447	2	PKHD1	6	51720710	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8035	51720710	119394357	7668	15819											
PKHD1	5314	broad.mit.edu	37	chr6	51798986	51798986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagttgagtaggaactccCgtagagtgtgatctgagctc	15	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51798986	A	A	51798986	3	1	9	1	0	0	0	0	1	0	0	0	12066	652	23	1	6344	1	PKHD1	6	51798986	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78276	51798986	119316081	7669	15820											
PKHD1	5314	broad.mit.edu	37	chr6	51882250	51882250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaacattgactctgccCaatgatctggcacaaagagg	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51882250	A	A	51882250	3	1	9	1	0	0	0	0	1	0	0	0	12066	595	21	2	6841	2	PKHD1	6	51882250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83264	51882250	119232817	7670	15821											
PKHD1	5314	broad.mit.edu	37	chr6	51889826	51889826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctctcaggcctgtgccCtctatggtcaagaggcttcc	10	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51889826	A	A	51889826	3	1	9	1	0	0	0	0	1	0	0	0	12066	680	24	2	7625	2	PKHD1	6	51889826	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7576	51889826	119225241	7671	15822											
IL17A	3605	broad.mit.edu	37	chr6	52052500	52052500	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggacaagaacttccccCggactgtgatggtcaacctg	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52052500	A	A	52052500	2	1	9	1	0	0	0	0	0	0	0	1	7704	643	23	1		1	IL17A	6	52052500	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	162674	52052500	119062567	7672	15823											
IL17A	3605	broad.mit.edu	37	chr6	52052534	52052534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctgaacatccataaccGgaataccaataccaatccca	3	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52052534	T	T	52052534	3	4	9	1	0	0	0	0	1	0	0	0	7704	1116	39	1	167	1	IL17A	6	52052534	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	52052534	119062533	7673	15824											
MCM3	4172	broad.mit.edu	37	chr6	52131397	52131397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctctttcatcagtaagtGggctcactcaccttgaggca	8	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52131397	T	T	52131397	1	4	9	0	1	0	0	0	0	0	0	0	9480	1363	47	2		2	MCM3	6	52131397	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78863	52131397	118983670	7674	15825											
MCM3	4172	broad.mit.edu	37	chr6	52131505	52131505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttccttctaaaataccCacagcagttaagagagagaa	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52131505	A	A	52131505	1	1	9	0	1	0	0	0	0	0	0	0	9480	609	21	2		2	MCM3	6	52131505	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	52131505	118983562	7675	15826											
EFHC1	114327	broad.mit.edu	37	chr6	52370298	52370298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaaaaataacaatatgtGggagactaaagggtctgctg	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52370298	T	T	52370298	1	4	9	0	1	0	0	0	0	0	0	0	4986	1363	47	2		2	EFHC1	6	52370298	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	238793	52370298	118744769	7676	15827											
EFHC1	114327	broad.mit.edu	37	chr6	52370337	52370337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctccagaccttctgcaaGggctgtgccaagttcaggag	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52370337	T	T	52370337	1	4	9	0	1	0	0	0	0	0	0	0	4986	1015	35	2		2	EFHC1	6	52370337	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	52370337	118744730	7677	15828											
EFHC1	114327	broad.mit.edu	37	chr6	52370803	52370803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcccaggcctctaagcGggccagcctgcagcagaccc	11	19	1	1	rs111829425		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52370803	T	T	52370803	1	4	9	0	1	0	0	0	0	0	0	0	4986	1131	39	1		1	EFHC1	6	52370803	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	466	52370803	118744264	7678	15829											
TMEM14A	28978	broad.mit.edu	37	chr6	52546673	52546673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccggctatggagcttacCgtgtctccaatgacaaacga	11	11	1	1	rs141364568	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52546673	A	A	52546673	3	1	9	1	0	0	0	0	1	0	0	0	16186	652	23	1	139	1	TMEM14A	6	52546673	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175870	52546673	118568394	7679	15830											
GSTA2	2939	broad.mit.edu	37	chr6	52616457	52616457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaggtgaatgtcagccCggctcagcttgttgccaaca	10	14	2	1	rs139588545	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52616457	A	A	52616457	3	1	9	1	0	0	0	0	1	0	0	0	6897	652	23	1	212	1	GSTA2	6	52616457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69784	52616457	118498610	7680	15831											
GSTA1	2938	broad.mit.edu	37	chr6	52657948	52657948	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctgaatgaatgagagagTaagaactgtaactctactca	8	6	3	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52657948	C	C	52657948	1	2	9	0	1	0	0	0	0	0	0	0	6896	1653	57	5		5	GSTA1	6	52657948	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	41491	52657948	118457119	7681	15832											
GSTA1	2938	broad.mit.edu	37	chr6	52661158	52661158	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaagtgtctatgaaaccCacccttttgggatgaacaaa	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52661158	A	A	52661158	1	1	9	0	1	0	0	0	0	0	0	0	6896	609	21	2		2	GSTA1	6	52661158	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3210	52661158	118453909	7682	15833											
GSTA5	221357	broad.mit.edu	37	chr6	52697687	52697687	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaagctggagataagactCgagtcaagctcttccacgta	12	9	2	2	rs142283568	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52697687	A	A	52697687	2	1	9	1	0	0	0	0	0	0	0	1	6900	871	31	3		3	GSTA5	6	52697687	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36529	52697687	118417380	7683	15834											
GSTA5	221357	broad.mit.edu	37	chr6	52698894	52698894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccactatttttctactGgtgtctaaactcagttcccc	5	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52698894	T	T	52698894	1	4	9	0	1	0	0	0	0	0	0	0	6900	1363	47	2		2	GSTA5	6	52698894	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1207	52698894	118416173	7684	15835											
GSTA5	221357	broad.mit.edu	37	chr6	52705574	52705574	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatggactccatactgcccCgtgcattggagtagtggagc	13	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52705574	G	G	52705574	3	3	9	1	0	0	0	0	1	0	0	0	6900	652	23	4	654	4	GSTA5	6	52705574	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6680	52705574	118409493	7685	15836											
GSTA3	2940	broad.mit.edu	37	chr6	52764706	52764706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctctaaactcagtgccCcaaaatgctgaacagcttca	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52764706	A	A	52764706	1	1	9	0	1	0	0	0	0	0	0	0	6898	638	22	2		2	GSTA3	6	52764706	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	59132	52764706	118350361	7686	15837											
GSTA3	2940	broad.mit.edu	37	chr6	52767120	52767120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgtgttctctgtggatGgaagaacacaaaatataccg	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52767120	T	T	52767120	1	4	9	0	1	0	0	0	0	0	0	0	6898	1363	47	2		2	GSTA3	6	52767120	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2414	52767120	118347947	7687	15838											
ICK	22858	broad.mit.edu	37	chr6	52883070	52883070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgaacagggctgagcGgaggaagcatgggaagctgt	18	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52883070	T	T	52883070	1	4	9	0	1	0	0	0	0	0	0	0	7554	1131	39	1		1	ICK	6	52883070	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	115950	52883070	118231997	7688	15839											
ICK	22858	broad.mit.edu	37	chr6	52905989	52905989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcccagcaggacggaacCgtaggttccatccccgagct	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52905989	A	A	52905989	3	1	9	1	0	0	0	0	1	0	0	0	7554	652	23	1	1904	1	ICK	6	52905989	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22919	52905989	118209078	7689	15840											
ICK	22858	broad.mit.edu	37	chr6	52906004	52906004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccgtaggttccatcccCgagctgcctgattgttgtgt	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52906004	A	A	52906004	3	1	9	1	0	0	0	0	1	0	0	0	7554	652	23	1	1919	1	ICK	6	52906004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	52906004	118209063	7690	15841											
GCM1	8521	broad.mit.edu	37	chr6	52993058	52993058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgcagtgatccaaaccCaagtatgtcatttcttcctc	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52993058	A	A	52993058	3	1	9	1	0	0	0	0	1	0	0	0	6359	593	21	2	57	2	GCM1	6	52993058	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87054	52993058	118122009	7691	15842											
GCLC	2729	broad.mit.edu	37	chr6	53373412	53373412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagtcctcgctcctccCgagttctatcatctacagat	5	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53373412	A	A	53373412	3	1	9	1	0	0	0	0	1	0	0	0	6357	652	23	1	1023	1	GCLC	6	53373412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	380354	53373412	117741655	7692	15843											
GCLC	2729	broad.mit.edu	37	chr6	53385676	53385676	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctcaactgtattgaactCggacattgttcctccgtagg	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53385676	A	A	53385676	4	1	9	1	0	0	0	0	0	1	0	0	6357	893	31	3	1623	3	GCLC	6	53385676	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12264	53385676	117729391	7693	15844											
GCLC	2729	broad.mit.edu	37	chr6	53385691	53385691	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactcggacattgttcctcCgtagggctgtcctggtgtcc	12	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53385691	A	A	53385691	4	1	9	1	0	0	0	0	0	1	0	0	6357	661	23	1	1638	1	GCLC	6	53385691	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	53385691	117729376	7694	15845											
GCLC	2729	broad.mit.edu	37	chr6	53385712	53385712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggctgtcctggtgtccCttcaatcatgtaactcccat	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53385712	A	A	53385712	3	1	9	1	0	0	0	0	1	0	0	0	6357	681	24	2	1659	2	GCLC	6	53385712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	53385712	117729355	7695	15846											
LRRC1	55227	broad.mit.edu	37	chr6	53787571	53787571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcaatcatgccattgacCgagtgaccacttctgtgtag	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53787571	A	A	53787571	2	1	9	1	0	0	0	0	0	0	0	1	9053	644	23	1		1	LRRC1	6	53787571	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	401859	53787571	117327496	7696	15847											
C6orf142	90523	broad.mit.edu	37	chr6	53989442	53989442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaaagctgaatatgtcCttattgtggactccgaaggg	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53989442	A	A	53989442	3	1	9	1	0	0	0	0	1	0	0	0	2356	681	24	2	401	2	C6orf142	6	53989442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	201871	53989442	117125625	7697	15848											
GFRAL	389400	broad.mit.edu	37	chr6	55216195	55216195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgccaagcagccatacGgttcttctatcaaaatatac	6	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55216195	T	T	55216195	3	4	9	1	0	0	0	0	1	0	0	0	6415	1116	39	1	533	1	GFRAL	6	55216195	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1226753	55216195	115898872	7698	15849											
HMGCLL1	54511	broad.mit.edu	37	chr6	55363970	55363970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaataaatattaagaaagCccccttttaaaaataatata	2	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55363970	A	A	55363970	1	1	9	0	1	0	0	0	0	0	0	0	7297	754	26	3		3	HMGCLL1	6	55363970	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	147775	55363970	115751097	7699	15850											
BMP5	653	broad.mit.edu	37	chr6	55739373	55739373	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcccttactgagtactcCgactcttcaggattttcttc	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55739373	A	A	55739373	2	1	9	1	0	0	0	0	0	0	0	1	1469	639	23	1		1	BMP5	6	55739373	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	375403	55739373	115375694	7700	15851											
BMP5	653	broad.mit.edu	37	chr6	55739533	55739533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccgtctttcgtggttcCgtagtcttctataaataaaa	6	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55739533	A	A	55739533	3	1	9	1	0	0	0	0	1	0	0	0	1469	652	23	1	1261	1	BMP5	6	55739533	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160	55739533	115375534	7701	15852											
DST	667	broad.mit.edu	37	chr6	56342200	56342200	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatggtagtgatggagtcGgggtggcagatagccaaaac	15	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56342200	T	T	56342200	2	4	9	1	0	0	0	0	0	0	0	1	4823	1103	39	1		1	DST	6	56342200	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	602667	56342200	114772867	7702	15853											
DST	667	broad.mit.edu	37	chr6	56342221	56342221	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcagatagccaaaacGgtgtcgcccatagtggtggc	16	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56342221	T	T	56342221	2	4	9	1	0	0	0	0	0	0	0	1	4823	1103	39	1		1	DST	6	56342221	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	56342221	114772846	7703	15854											
DST	667	broad.mit.edu	37	chr6	56357765	56357765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgaaataagactgtgtcCaagatgagacttggccgaga	11	6	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56357765	A	A	56357765	3	1	9	1	0	0	0	0	1	0	0	0	4823	593	21	2	2947	2	DST	6	56357765	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15544	56357765	114757302	7704	15855											
DST	667	broad.mit.edu	37	chr6	56362873	56362873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaatataaagataacacCatgtttgctagtttgtaaca	6	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56362873	A	A	56362873	1	1	9	0	1	0	0	0	0	0	0	0	4823	609	21	2		2	DST	6	56362873	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5108	56362873	114752194	7705	15856											
DST	667	broad.mit.edu	37	chr6	56366376	56366376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatttcagttccattaatGggtcttgaacagtgtgtttg	9	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56366376	T	T	56366376	3	4	9	1	0	0	0	0	1	0	0	0	4823	1348	47	2	3802	2	DST	6	56366376	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3503	56366376	114748691	7706	15857											
DST	667	broad.mit.edu	37	chr6	56373423	56373423	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatctttaatggtaactatCaatgacatgtgatcacacca	6	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56373423	G	G	56373423	3	3	9	1	0	0	0	0	1	0	0	0	4823	825	29	4	4357	4	DST	6	56373423	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7047	56373423	114741644	7707	15858											
DST	667	broad.mit.edu	37	chr6	56417651	56417651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctgagtttgcaacatGgtcaggtatttgttactgta	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56417651	T	T	56417651	2	4	9	1	0	0	0	0	0	0	0	1	4823	1335	47	2		2	DST	6	56417651	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44228	56417651	114697416	7708	15859											
DST	667	broad.mit.edu	37	chr6	56417828	56417828	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgttcagtgaccatgtcCaccttctggatcagtgactt	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56417828	A	A	56417828	2	1	9	1	0	0	0	0	0	0	0	1	4823	581	21	2		2	DST	6	56417828	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	177	56417828	114697239	7709	15860											
DST	667	broad.mit.edu	37	chr6	56469422	56469422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttttcttgggatcttGgagacaaggcttgttctttt	9	9	3	1	rs117093584	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56469422	T	T	56469422	1	4	9	0	1	0	0	0	0	0	0	0	4823	1363	47	2		2	DST	6	56469422	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51594	56469422	114645645	7710	15861											
DST	667	broad.mit.edu	37	chr6	56469553	56469553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccatttgcacaccgctcCgactgcagaaaatcattttt	5	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56469553	A	A	56469553	1	1	9	0	1	0	0	0	0	0	0	0	4823	667	23	1		1	DST	6	56469553	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	131	56469553	114645514	7711	15862											
DST	667	broad.mit.edu	37	chr6	56481509	56481509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagggtcaatgacaccCccactggcaatctgggcttc	9	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56481509	A	A	56481509	1	1	9	0	1	0	0	0	0	0	0	0	4823	610	22	2		2	DST	6	56481509	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11956	56481509	114633558	7712	15863											
DST	667	broad.mit.edu	37	chr6	56481617	56481617	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagaagaataagaatatccCacagctgccttctctgcctc	6	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56481617	G	G	56481617	1	3	9	0	1	0	0	0	0	0	0	0	4823	581	21	4		4	DST	6	56481617	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	56481617	114633450	7713	15864											
DST	667	broad.mit.edu	37	chr6	56482152	56482152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttcagcactgggaactGggttcttttcttgttttaat	8	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56482152	T	T	56482152	1	4	9	0	1	0	0	0	0	0	0	0	4823	1348	47	2		2	DST	6	56482152	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	535	56482152	114632915	7714	15865											
DST	667	broad.mit.edu	37	chr6	56483740	56483740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctgaactttctgctcccCgcgtcgcttctcttctttgg	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56483740	A	A	56483740	1	1	9	0	1	0	0	0	0	0	0	0	4823	652	23	1		1	DST	6	56483740	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1588	56483740	114631327	7715	15866											
DST	667	broad.mit.edu	37	chr6	56485347	56485347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcctccctgaccttcGgaagttcttcctctactcgg	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56485347	T	T	56485347	1	4	9	0	1	0	0	0	0	0	0	0	4823	1116	39	1		1	DST	6	56485347	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1607	56485347	114629720	7716	15867											
DST	667	broad.mit.edu	37	chr6	56499057	56499057	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgatactgttgctcaattCtgaaatacatgaaagagaac	7	7	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56499057	A	A	56499057	5	1	9	1	0	0	0	0	0	0	1	0	4823	927	32	3	18560	3	DST	6	56499057	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	13710	56499057	114616010	7717	15868											
DST	667	broad.mit.edu	37	chr6	56499633	56499633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcacagatagctttgatcGgaatagaagttttgagtgga	12	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56499633	T	T	56499633	3	4	9	1	0	0	0	0	1	0	0	0	4823	1116	39	1	18757	1	DST	6	56499633	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	576	56499633	114615434	7718	15869											
DST	667	broad.mit.edu	37	chr6	56516036	56516036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtattcatatctatcagGtccggcctaggaaaaaattc	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56516036	T	T	56516036	3	4	9	1	0	0	0	0	1	0	0	0	4823	1276	44	3		3	DST	6	56516036	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16403	56516036	114599031	7719	15870											
DST	667	broad.mit.edu	37	chr6	56819224	56819224	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcggcttcttgaacgaccCgagaagaccgatttcatcgg	10	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56819224	A	A	56819224	2	1	9	1	0	0	0	0	0	0	0	1	4823	667	23	1		1	DST	6	56819224	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	303188	56819224	114295843	7720	15871											
DST	667	broad.mit.edu	37	chr6	56819268	56819268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccctttctggagcttgcGgtgccagcagcagaagaaga	12	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56819268	T	T	56819268	3	4	9	1	0	0	0	0	1	0	0	0	4823	1131	39	1		1	DST	6	56819268	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	56819268	114295799	7721	15872											
BEND6	221336	broad.mit.edu	37	chr6	56857183	56857183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctattttagagagaccCatattcgggaaatgcctttc	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56857183	A	A	56857183	3	1	9	1	0	0	0	0	1	0	0	0	1407	594	21	2	134	2	BEND6	6	56857183	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37915	56857183	114257884	7722	15873											
BEND6	221336	broad.mit.edu	37	chr6	56857308	56857308	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaactaacaaacaccCggaaagaaaacagccgactt	6	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56857308	A	A	56857308	2	1	9	1	0	0	0	0	0	0	0	1	1407	643	23	1		1	BEND6	6	56857308	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	125	56857308	114257759	7723	15874											
RAB23	51715	broad.mit.edu	37	chr6	57055316	57055316	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggtcctttgtttgttGggtctaagattgatgacatc	10	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57055316	T	T	57055316	2	4	9	1	0	0	0	0	0	0	0	1	13018	1335	47	2		2	RAB23	6	57055316	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	198008	57055316	114059751	7724	15875											
PRIM2	5558	broad.mit.edu	37	chr6	57372241	57372241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagtattcaaatatgttcGgtgttcggcctttgctgttt	9	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57372241	T	T	57372241	1	4	9	0	1	0	0	0	0	0	0	0	12597	1131	39	1		1	PRIM2	6	57372241	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	316925	57372241	113742826	7725	15876											
PRIM2	5558	broad.mit.edu	37	chr6	57398078	57398078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccataacaaatattacaGggtacctgataagtcttcca	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398078	T	T	57398078	1	4	9	0	1	0	0	0	0	0	0	0	12597	1015	35	2		2	PRIM2	6	57398078	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25837	57398078	113716989	7726	15877											
PTP4A1	7803	broad.mit.edu	37	chr6	64290018	64290018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttggagaagtatcgtcCtaaaatgcggctgcgtttca	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64290018	A	A	64290018	3	1	9	1	0	0	0	0	1	0	0	0	12876	681	24	2	479	2	PTP4A1	6	64290018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6891940	64290018	106825049	7727	15878											
PHF3	23469	broad.mit.edu	37	chr6	64394352	64394352	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcataagtgtaataatccGggagaaatagatgtgccatc	10	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64394352	T	T	64394352	2	4	9	1	0	0	0	0	0	0	0	1	11931	1103	39	1		1	PHF3	6	64394352	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	104334	64394352	106720715	7728	15879											
PHF3	23469	broad.mit.edu	37	chr6	64401633	64401633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgttttccaggtttatGgttggctgtgggagatgtga	15	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64401633	T	T	64401633	3	4	9	1	0	0	0	0	1	0	0	0	11931	1348	47	2	2210	2	PHF3	6	64401633	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7281	64401633	106713434	7729	15880											
PHF3	23469	broad.mit.edu	37	chr6	64401679	64401679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttcatggtgattgtgttGggttaagtctttctcaagca	12	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64401679	T	T	64401679	3	4	9	1	0	0	0	0	1	0	0	0	11931	1348	47	2	2256	2	PHF3	6	64401679	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46	64401679	106713388	7730	15881											
PHF3	23469	broad.mit.edu	37	chr6	64423091	64423091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagccacagcgtatgatGggtcctctctcacaagcatc	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64423091	T	T	64423091	3	4	9	1	0	0	0	0	1	0	0	0	11931	1348	47	2	5665	2	PHF3	6	64423091	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21412	64423091	106691976	7731	15882											
BAI3	577	broad.mit.edu	37	chr6	69703714	69703714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggtgatggaatgtccCaggtgaccaagacactgttg	14	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69703714	A	A	69703714	3	1	9	1	0	0	0	0	1	0	0	0	1305	595	21	2	1823	2	BAI3	6	69703714	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5280623	69703714	101411353	7732	15883											
BAI3	577	broad.mit.edu	37	chr6	69944957	69944957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacaccttcagttaccCtaatagtaggcagtggtctt	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69944957	A	A	69944957	3	1	9	1	0	0	0	0	1	0	0	0	1305	680	24	2	2707	2	BAI3	6	69944957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	241243	69944957	101170110	7733	15884											
BAI3	577	broad.mit.edu	37	chr6	70048915	70048915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaacgccatgttagtccCaatcatttacatcttcttgt	5	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70048915	A	A	70048915	1	1	9	0	1	0	0	0	0	0	0	0	1305	609	21	2		2	BAI3	6	70048915	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103958	70048915	101066152	7734	15885											
COL19A1	1310	broad.mit.edu	37	chr6	70812020	70812020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgatattaaaatataatGgagtcacagtatttatcatc	6	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70812020	T	T	70812020	1	4	9	0	1	0	0	0	0	0	0	0	3708	1363	47	2		2	COL19A1	6	70812020	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	763105	70812020	100303047	7735	15886											
COL19A1	1310	broad.mit.edu	37	chr6	70831805	70831805	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacaaggaatacaccaaactCttggtggatattataacaag	7	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70831805	A	A	70831805	3	1	9	1	0	0	0	0	1	0	0	0	3708	913	32	3	1374	3	COL19A1	6	70831805	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19785	70831805	100283262	7736	15887											
COL19A1	1310	broad.mit.edu	37	chr6	70850787	70850787	+	Intron	SNP	C	A	A													tatagggtttatccacacccCggtttggagagtttatttct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70850787	A	A	70850787	1	1	9	0	1	0	0	0	0	0	0	0	3708	667	23	1		1	COL19A1	6	70850787	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18982	70850787	100264280	7737	15888	100	2									
COL19A1	1310	broad.mit.edu	37	chr6	70850793	70850793	+	Intron	SNP	G	T	T													gtttatccacaccccggtttGgagagtttatttctaagagc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70850793	T	T	70850793	1	4	9	0	1	0	0	0	0	0	0	0	3708	1363	47	2		2	COL19A1	6	70850793	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	70850793	100264274	7738	15889	100	2									
COL9A1	1297	broad.mit.edu	37	chr6	70942270	70942270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttctttggttccacatGggcaagatgacttaccttta	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70942270	T	T	70942270	1	4	9	0	1	0	0	0	0	0	0	0	3739	1363	47	2		2	COL9A1	6	70942270	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	91477	70942270	100172797	7739	15890											
COL9A1	1297	broad.mit.edu	37	chr6	71003934	71003934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagccatcaatgtcaattGggcctcttggctttataggt	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71003934	T	T	71003934	3	4	9	1	0	0	0	0	1	0	0	0	3739	1348	47	2	2345	2	COL9A1	6	71003934	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61664	71003934	100111133	7740	15891											
COL9A1	1297	broad.mit.edu	37	chr6	71004073	71004073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgaaaaggctgctgtttGgagacttccatccagtccct	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71004073	T	T	71004073	3	4	9	1	0	0	0	0	1	0	0	0	3739	1357	47	2	2484	2	COL9A1	6	71004073	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139	71004073	100110994	7741	15892											
COL9A1	1297	broad.mit.edu	37	chr6	71009818	71009818	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtagctgatcccactactCtctggatagctcttctagat	7	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71009818	A	A	71009818	3	1	9	1	0	0	0	0	1	0	0	0	3739	913	32	3	2754	3	COL9A1	6	71009818	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5745	71009818	100105249	7742	15893											
FAM135A	57579	broad.mit.edu	37	chr6	71238146	71238146	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgattgtctgtgtgcacGgtttagatggtatgtgacat	12	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71238146	T	T	71238146	3	4	9	1	0	0	0	0	1	0	0	0	5494	1116	39	1	3898	1	FAM135A	6	71238146	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	228328	71238146	99876921	7743	15894											
SMAP1	60682	broad.mit.edu	37	chr6	71562283	71562283	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccaacgggaacacaacGgtgccacccctgaacgatga	11	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71562283	T	T	71562283	2	4	9	1	0	0	0	0	0	0	0	1	14880	1103	39	1		1	SMAP1	6	71562283	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	324137	71562283	99552784	7744	15895											
RIMS1	22999	broad.mit.edu	37	chr6	72968753	72968753	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagacaccatgatgcctccCgaagtccagttgatcataga	8	13	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72968753	A	A	72968753	2	1	9	1	0	0	0	0	0	0	0	1	13478	644	23	1		1	RIMS1	6	72968753	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1406470	72968753	98146314	7745	15896											
KCNQ5	56479	broad.mit.edu	37	chr6	73697373	73697373	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgaccgggccatgagctGgaagtacagccgcggagccc	15	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73697373	C	C	73697373	1	2	9	0	1	0	0	0	0	0	0	0	8156	1363	47	4		4	KCNQ5	6	73697373	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	728620	73697373	97417694	7746	15897											
KCNQ5	56479	broad.mit.edu	37	chr6	73751715	73751715	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattcgaatctggtctgcGggttgctgttgtcgatatag	12	7	3	0	rs139236005		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73751715	T	T	73751715	2	4	9	1	0	0	0	0	0	0	0	1	8156	1103	39	1		1	KCNQ5	6	73751715	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	54342	73751715	97363352	7747	15898											
KCNQ5	56479	broad.mit.edu	37	chr6	73815018	73815018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctatggagacaaaactccCctaacttggctgggaagatt	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73815018	A	A	73815018	2	1	9	1	0	0	0	0	0	0	0	1	8156	610	22	2		2	KCNQ5	6	73815018	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63303	73815018	97300049	7748	15899											
KCNQ5	56479	broad.mit.edu	37	chr6	73815030	73815030	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaactcccctaacttggctGggaagattgctttctgcagg	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73815030	T	T	73815030	2	4	9	1	0	0	0	0	0	0	0	1	8156	1335	47	2		2	KCNQ5	6	73815030	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	73815030	97300037	7749	15900											
DDX43	55510	broad.mit.edu	37	chr6	74114314	74114314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactatcaaatggtatgcatGgtaaataaaatatattgtag	7	3	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74114314	T	T	74114314	1	4	9	0	1	0	0	0	0	0	0	0	4396	1363	47	2		2	DDX43	6	74114314	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	299284	74114314	97000753	7750	15901											
DDX43	55510	broad.mit.edu	37	chr6	74117278	74117278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagttctaactcccactcGggaattagcacttcaagtag	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74117278	T	T	74117278	3	4	9	1	0	0	0	0	1	0	0	0	4396	1116	39	1	1007	1	DDX43	6	74117278	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2964	74117278	96997789	7751	15902											
MTO1	25821	broad.mit.edu	37	chr6	74176018	74176018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttggatggcctgtgttctCgcatctgtgaccagtctggt	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74176018	A	A	74176018	3	1	9	1	0	0	0	0	1	0	0	0	10047	884	31	3	310	3	MTO1	6	74176018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58740	74176018	96939049	7752	15903											
MTO1	25821	broad.mit.edu	37	chr6	74190430	74190430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgattacttagatcccCgtcagatcaccccttccttg	6	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74190430	A	A	74190430	3	1	9	1	0	0	0	0	1	0	0	0	10047	652	23	1	1267	1	MTO1	6	74190430	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14412	74190430	96924637	7753	15904											
MTO1	25821	broad.mit.edu	37	chr6	74210300	74210300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtattgatttttagatcGgggctgctagtcgcataccc	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74210300	T	T	74210300	3	4	9	1	0	0	0	0	1	0	0	0	10047	1116	39	1	2170	1	MTO1	6	74210300	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19870	74210300	96904767	7754	15905											
EEF1A1	1915	broad.mit.edu	37	chr6	74229237	74229237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttgaaggagccctttccCatctgtaaggattaagagtc	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74229237	A	A	74229237	3	1	9	1	0	0	0	0	1	0	0	0	4963	594	21	2	1265	2	EEF1A1	6	74229237	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18937	74229237	96885830	7755	15906											
SLC17A5	26503	broad.mit.edu	37	chr6	74304834	74304834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggtgatcattgagagccCagttttgtacttcacctttg	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74304834	A	A	74304834	3	1	9	1	0	0	0	0	1	0	0	0	14533	595	21	2	37	2	SLC17A5	6	74304834	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75597	74304834	96810233	7756	15907											
CD109	135228	broad.mit.edu	37	chr6	74477789	74477789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttcaggtagtatccagGggacagttggtggctgtagg	15	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74477789	T	T	74477789	3	4	9	1	0	0	0	0	1	0	0	0	2993	1223	43	2	1563	2	CD109	6	74477789	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	172955	74477789	96637278	7757	15908											
CD109	135228	broad.mit.edu	37	chr6	74481239	74481239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcctgactccatagttGggattgtagctgttgacaaa	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74481239	T	T	74481239	3	4	9	1	0	0	0	0	1	0	0	0	2993	1348	47	2	1820	2	CD109	6	74481239	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3450	74481239	96633828	7758	15909											
COL12A1	1303	broad.mit.edu	37	chr6	75811640	75811640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctttgctacttaatctGggttcaccttttgaggcact	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75811640	T	T	75811640	1	4	9	0	1	0	0	0	0	0	0	0	3701	1363	47	2		2	COL12A1	6	75811640	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1330401	75811640	95303427	7759	15910											
COL12A1	1303	broad.mit.edu	37	chr6	75811720	75811720	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagaccaactcactgttcGgcctggaagtcctggctctc	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75811720	T	T	75811720	2	4	9	1	0	0	0	0	0	0	0	1	3701	1124	39	1		1	COL12A1	6	75811720	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	75811720	95303347	7760	15911											
COL12A1	1303	broad.mit.edu	37	chr6	75843058	75843058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcaccttcagtataaacGggaactacagtcacagtgta	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75843058	T	T	75843058	2	4	9	1	0	0	0	0	0	0	0	1	3701	1103	39	1		1	COL12A1	6	75843058	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31338	75843058	95272009	7761	15912											
COL12A1	1303	broad.mit.edu	37	chr6	75861682	75861682	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgagcacaccaatttttcGagctcgaggtctcatgccag	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75861682	T	T	75861682	2	4	9	1	0	0	0	0	0	0	0	1	3701	1066	37	3		3	COL12A1	6	75861682	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18624	75861682	95253385	7762	15913											
COL12A1	1303	broad.mit.edu	37	chr6	75865511	75865511	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggctcccaagtcactcGgaagcttgacatggttgggt	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75865511	T	T	75865511	2	4	9	1	0	0	0	0	0	0	0	1	3701	1124	39	1		1	COL12A1	6	75865511	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3829	75865511	95249556	7763	15914											
COL12A1	1303	broad.mit.edu	37	chr6	75887408	75887408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcatttccagttaatGgagtaccaggtcctgagaaa	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75887408	T	T	75887408	3	4	9	1	0	0	0	0	1	0	0	0	3701	1348	47	2	7003	2	COL12A1	6	75887408	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21897	75887408	95227659	7764	15915											
COL12A1	1303	broad.mit.edu	37	chr6	75890662	75890662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccccatcacaccttcttcGgtggtctcctctccagctaa	5	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75890662	T	T	75890662	2	4	9	1	0	0	0	0	0	0	0	1	3701	1103	39	1		1	COL12A1	6	75890662	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3254	75890662	95224405	7765	15916											
COL12A1	1303	broad.mit.edu	37	chr6	75893052	75893052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacattgcttcttgatccCttgctaggcacaaatatttt	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75893052	A	A	75893052	3	1	9	1	0	0	0	0	1	0	0	0	3701	680	24	2	7814	2	COL12A1	6	75893052	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2390	75893052	95222015	7766	15917											
COL12A1	1303	broad.mit.edu	37	chr6	75893200	75893200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaactcagtatgaggatccCggctgtattgcacaagacta	10	9	1	3	rs34887870		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75893200	A	A	75893200	3	1	9	1	0	0	0	0	1	0	0	0	3701	652	23	1	7962	1	COL12A1	6	75893200	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148	75893200	95221867	7767	15918											
COL12A1	1303	broad.mit.edu	37	chr6	75899409	75899409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcttgtcttctcttcccCaatgtcaaaagcagacacaa	4	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75899409	A	A	75899409	3	1	9	1	0	0	0	0	1	0	0	0	3701	594	21	2	8918	2	COL12A1	6	75899409	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6209	75899409	95215658	7768	15919											
COL12A1	1303	broad.mit.edu	37	chr6	75904548	75904548	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagtctcaaaacttaccCgttgtagggtccaccgttat	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75904548	A	A	75904548	2	1	9	1	0	0	0	0	0	0	0	1	3701	666	23	1		1	COL12A1	6	75904548	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5139	75904548	95210519	7769	15920											
FILIP1	27145	broad.mit.edu	37	chr6	76022408	76022408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttccgtactggagttGgaacagtctgtttttctggg	12	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76022408	T	T	76022408	3	4	9	1	0	0	0	0	1	0	0	0	5951	1348	47	2	509	2	FILIP1	6	76022408	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	117860	76022408	95092659	7770	15921											
FILIP1	27145	broad.mit.edu	37	chr6	76022447	76022447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgactttgaggattgtcCgtcccatgggcatttcctgg	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76022447	A	A	76022447	3	1	9	1	0	0	0	0	1	0	0	0	5951	652	23	1	548	1	FILIP1	6	76022447	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	76022447	95092620	7771	15922											
FILIP1	27145	broad.mit.edu	37	chr6	76023010	76023010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagaagatctttccacGggtttcttcaatcccacctg	7	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76023010	T	T	76023010	2	4	9	1	0	0	0	0	0	0	0	1	5951	1103	39	1		1	FILIP1	6	76023010	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	563	76023010	95092057	7772	15923											
FILIP1	27145	broad.mit.edu	37	chr6	76023315	76023315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacagaataatctacctGgagctgagaaagctgatctt	9	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76023315	T	T	76023315	3	4	9	1	0	0	0	0	1	0	0	0	5951	1357	47	2	1416	2	FILIP1	6	76023315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	305	76023315	95091752	7773	15924											
FILIP1	27145	broad.mit.edu	37	chr6	76023676	76023677	+	Missense_Mutation	DNP	CG	AT	AT													tccttaatcttattatcttcCgggcaggtgagctcagaccc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	76023677	AT	AT	76023676	3	1	9	1	0	0	0	0	1	0	0	0	5951	639	23	1	1777	1	FILIP1	6	76023676	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	361	76023676	95091391	7774	15925											
FILIP1	27145	broad.mit.edu	37	chr6	76024731	76024731	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttcttccctcagcttctGagtaagatcctgtactttct	5	12	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76024731	T	T	76024731	3	4	9	1	0	0	0	0	1	0	0	0	5951	1299	45	3	2832	3	FILIP1	6	76024731	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1055	76024731	95090336	7775	15926											
FILIP1	27145	broad.mit.edu	37	chr6	76124437	76124437	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactccccttccattatactGagtagttggatgaggtcttc	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76124437	T	T	76124437	2	4	9	1	0	0	0	0	0	0	0	1	5951	1277	45	3		3	FILIP1	6	76124437	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99706	76124437	94990630	7776	15927											
SENP6	26054	broad.mit.edu	37	chr6	76423457	76423457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccaaagatgttatgaaGggctctaatccaaaagtacc	7	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76423457	T	T	76423457	3	4	9	1	0	0	0	0	1	0	0	0	14163	991	35	2	3135	2	SENP6	6	76423457	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	299020	76423457	94691610	7777	15928											
MYO6	4646	broad.mit.edu	37	chr6	76542574	76542574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctagctgataaagcttttcGagacatgaaggtgctcaaga	10	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76542574	T	T	76542574	3	4	9	1	0	0	0	0	1	0	0	0	10175	1058	37	3	425	3	MYO6	6	76542574	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119117	76542574	94572493	7778	15929											
IMPG1	3617	broad.mit.edu	37	chr6	76744548	76744548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgccctaagagggtcccCgtacccaatcccaagcaaag	8	16	0	1	rs73468807	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76744548	A	A	76744548	1	1	9	0	1	0	0	0	0	0	0	0	7798	667	23	1		1	IMPG1	6	76744548	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	201974	76744548	94370519	7779	15930											
PHIP	55023	broad.mit.edu	37	chr6	79650500	79650500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagttaaagaggtgtcttcGaacaacagctgcctttgctc	9	9	1	1	rs147929895		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79650500	T	T	79650500	3	4	9	1	0	0	0	0	1	0	0	0	11937	1049	37	3	93	3	PHIP	6	79650500	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2905952	79650500	91464567	7780	15931											
PHIP	55023	broad.mit.edu	37	chr6	79650660	79650660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttttcggttacttctcCttaacactttgacacttgca	4	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79650660	A	A	79650660	3	1	9	1	0	0	0	0	1	0	0	0	11937	681	24	2	253	2	PHIP	6	79650660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160	79650660	91464407	7781	15932											
PHIP	55023	broad.mit.edu	37	chr6	79728795	79728795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtcgaaaattagaatgaGggaaacttaccagcactaaa	8	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79728795	T	T	79728795	1	4	9	0	1	0	0	0	0	0	0	0	11937	1015	35	2		2	PHIP	6	79728795	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78135	79728795	91386272	7782	15933											
PHIP	55023	broad.mit.edu	37	chr6	79735644	79735644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacaacaacaatgtatagGgattaagacaattacctgta	6	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79735644	T	T	79735644	1	4	9	0	1	0	0	0	0	0	0	0	11937	1247	43	2		2	PHIP	6	79735644	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6849	79735644	91379423	7783	15934											
PHIP	55023	broad.mit.edu	37	chr6	79735689	79735689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatagatgcactatggcCctgaagaacagccaaaggtg	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79735689	A	A	79735689	3	1	9	1	0	0	0	0	1	0	0	0	11937	623	22	2	4804	2	PHIP	6	79735689	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	79735689	91379378	7784	15935											
PHIP	55023	broad.mit.edu	37	chr6	79735838	79735838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggtagctaacaacctcCcatcatctgttgcccatatt	5	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79735838	A	A	79735838	3	1	9	1	0	0	0	0	1	0	0	0	11937	623	22	2	4953	2	PHIP	6	79735838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	79735838	91379229	7785	15936											
PHIP	55023	broad.mit.edu	37	chr6	79787070	79787070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggagctttcacgttctaGggccaagtttttgtctctgt	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79787070	T	T	79787070	1	4	9	0	1	0	0	0	0	0	0	0	11937	1015	35	2		2	PHIP	6	79787070	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51232	79787070	91327997	7786	15937											
HMGN3	9324	broad.mit.edu	37	chr6	79918283	79918283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgctgacaatctggcagacCgtcttgtgggctacaaaggg	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79918283	A	A	79918283	3	1	9	1	0	0	0	0	1	0	0	0	7303	652	23	1	238	1	HMGN3	6	79918283	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131213	79918283	91196784	7787	15938											
LCA5	167691	broad.mit.edu	37	chr6	80223436	80223436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttctgtttggtagaccCttagggcttggtttccgagg	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80223436	A	A	80223436	3	1	9	1	0	0	0	0	1	0	0	0	8728	680	24	2	1904	2	LCA5	6	80223436	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	305153	80223436	90891631	7788	15939											
LCA5	167691	broad.mit.edu	37	chr6	80223499	80223499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaagtgaaagctgtacCaaacacagtgttatttgttc	8	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80223499	A	A	80223499	1	1	9	0	1	0	0	0	0	0	0	0	8728	609	21	2		2	LCA5	6	80223499	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	63	80223499	90891568	7789	15940											
LCA5	167691	broad.mit.edu	37	chr6	80228609	80228609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacttcctgctctttccccCattgttttgaaaaatggtct	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80228609	A	A	80228609	3	1	9	1	0	0	0	0	1	0	0	0	8728	594	21	2	2118	2	LCA5	6	80228609	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5110	80228609	90886458	7790	15941											
SH3BGRL2	83699	broad.mit.edu	37	chr6	80383462	80383462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccccccggaaaagaaaccCactcagggcaaccccctgcc	8	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80383462	A	A	80383462	2	1	9	1	0	0	0	0	0	0	0	1	14355	581	21	2		2	SH3BGRL2	6	80383462	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	154853	80383462	90731605	7791	15942											
SH3BGRL2	83699	broad.mit.edu	37	chr6	80409278	80409278	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgaagcacccctggtactCagcacacacatgcttaccta	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80409278	A	A	80409278	1	1	9	0	1	0	0	0	0	0	0	0	14355	841	29	3		3	SH3BGRL2	6	80409278	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	25816	80409278	90705789	7792	15943											
TTK	7272	broad.mit.edu	37	chr6	80722987	80722987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaattattttgtttcacGggtaaaagacaaacctctag	6	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80722987	T	T	80722987	1	4	9	0	1	0	0	0	0	0	0	0	16846	1131	39	1		1	TTK	6	80722987	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	313709	80722987	90392080	7793	15944											
IBTK	25998	broad.mit.edu	37	chr6	82937017	82937017	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaaatttacaaagcacCacctaagggaaaacaagaga	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82937017	A	A	82937017	2	1	9	1	0	0	0	0	0	0	0	1	7546	581	21	2		2	IBTK	6	82937017	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2214030	82937017	88178050	7794	15945											
TPBG	7162	broad.mit.edu	37	chr6	83075715	83075715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgacctggactgtgaccCgattcttcccccatccctgc	8	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83075715	A	A	83075715	3	1	9	1	0	0	0	0	1	0	0	0	16518	652	23	1	1039	1	TPBG	6	83075715	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138698	83075715	88039352	7795	15946											
TPBG	7162	broad.mit.edu	37	chr6	83075905	83075905	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaaatcaatgcggacccCagattaacgaacctcagttc	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83075905	A	A	83075905	2	1	9	1	0	0	0	0	0	0	0	1	16518	581	21	2		2	TPBG	6	83075905	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	190	83075905	88039162	7796	15947											
UBE2CBP	90025	broad.mit.edu	37	chr6	83669694	83669694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaatacgcttgcagtccCgggaagaaaagagttgttcc	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83669694	A	A	83669694	1	1	9	0	1	0	0	0	0	0	0	0	16973	667	23	1		1	UBE2CBP	6	83669694	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	593789	83669694	87445373	7797	15948											
DOPEY1	23033	broad.mit.edu	37	chr6	83838812	83838812	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgagacagaaacagcatcCactgtgggatctgaagaaac	10	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83838812	G	G	83838812	2	3	9	1	0	0	0	0	0	0	0	1	4747	581	21	4		4	DOPEY1	6	83838812	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	169118	83838812	87276255	7798	15949											
PGM3	5238	broad.mit.edu	37	chr6	83880139	83880139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattgcctcctgtaatcctGggggtgtaactgcttgtctt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83880139	T	T	83880139	3	4	9	1	0	0	0	0	1	0	0	0	11895	1348	47	2	212	2	PGM3	6	83880139	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41327	83880139	87234928	7799	15950											
PGM3	5238	broad.mit.edu	37	chr6	83900662	83900662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcgaaatccagcagtccCgtattgaaggatcagtccat	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83900662	A	A	83900662	3	1	9	1	0	0	0	0	1	0	0	0	11895	652	23	1	1606	1	PGM3	6	83900662	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20523	83900662	87214405	7800	15951											
PRSS35	167681	broad.mit.edu	37	chr6	84233437	84233437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctttgagaatggcaccCgaaccttaaccagggtgaaa	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84233437	A	A	84233437	2	1	9	1	0	0	0	0	0	0	0	1	12730	644	23	1		1	PRSS35	6	84233437	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	332775	84233437	86881630	7801	15952											
SNAP91	9892	broad.mit.edu	37	chr6	84301019	84301019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttccaaatgcatctatcCgttatccattgtgcagcgga	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84301019	A	A	84301019	1	1	9	0	1	0	0	0	0	0	0	0	14947	667	23	1		1	SNAP91	6	84301019	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	67582	84301019	86814048	7802	15953											
SNAP91	9892	broad.mit.edu	37	chr6	84375234	84375234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagctactgtttgttgccCgctcaaagagagtgtcggcc	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84375234	A	A	84375234	3	1	9	1	0	0	0	0	1	0	0	0	14947	652	23	1	2630	1	SNAP91	6	84375234	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74215	84375234	86739833	7803	15954											
TBX18	9096	broad.mit.edu	37	chr6	85448178	85448178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtttctaggcaggaacGggctgtatatatgacccagg	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85448178	T	T	85448178	1	4	9	0	1	0	0	0	0	0	0	0	15775	1131	39	1		1	TBX18	6	85448178	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1072944	85448178	85666889	7804	15955											
TBX18	9096	broad.mit.edu	37	chr6	85448256	85448256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcttcaaaggtcagagtcCgtagtgatggtcgccagaat	11	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85448256	A	A	85448256	3	1	9	1	0	0	0	0	1	0	0	0	15775	652	23	1	773	1	TBX18	6	85448256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	85448256	85666811	7805	15956											
NT5E	4907	broad.mit.edu	37	chr6	86203631	86203631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatccagcagttgaaggtcGgatcaagttttccacaggaa	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86203631	T	T	86203631	3	4	9	1	0	0	0	0	1	0	0	0	10788	1116	39	1	1668	1	NT5E	6	86203631	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	755375	86203631	84911436	7806	15957											
SNX14	57231	broad.mit.edu	37	chr6	86243449	86243449	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccatgcagcaaggtttcGgggagtattaggtgtgctca	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86243449	T	T	86243449	2	4	9	1	0	0	0	0	0	0	0	1	14999	1124	39	1		1	SNX14	6	86243449	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39818	86243449	84871618	7807	15958											
SNX14	57231	broad.mit.edu	37	chr6	86267635	86267635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcatatttagatatttcGggtgaaaattggtgtataaa	8	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86267635	T	T	86267635	1	4	9	0	1	0	0	0	0	0	0	0	14999	1131	39	1		1	SNX14	6	86267635	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24186	86267635	84847432	7808	15959											
SYNCRIP	10492	broad.mit.edu	37	chr6	86324565	86324565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatcaccaccttggagcGgttgctgagcaatgggttgg	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86324565	T	T	86324565	3	4	9	1	0	0	0	0	1	0	0	0	15563	1116	39	1	140	1	SYNCRIP	6	86324565	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56930	86324565	84790502	7809	15960											
ZNF292	23036	broad.mit.edu	37	chr6	87966057	87966057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtgaccaaacaagacCagatttctgcctctgagctc	8	13	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87966057	A	A	87966057	3	1	9	1	0	0	0	0	1	0	0	0	17952	595	21	2	2740	2	ZNF292	6	87966057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1641492	87966057	83149010	7810	15961											
C6orf165	154313	broad.mit.edu	37	chr6	88140927	88140927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagactgctctcctttcccCgattttttctttatatggag	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88140927	A	A	88140927	1	1	9	0	1	0	0	0	0	0	0	0	2364	667	23	1		1	C6orf165	6	88140927	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	174870	88140927	82974140	7811	15962											
RARS2	57038	broad.mit.edu	37	chr6	88239336	88239336	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacgataaaatgattctcCtgaatattcatcaaaatata	3	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88239336	A	A	88239336	4	1	9	1	0	0	0	0	0	1	0	0	13167	690	24	2	978	2	RARS2	6	88239336	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98409	88239336	82875731	7812	15963											
CNR1	1268	broad.mit.edu	37	chr6	88854765	88854765	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtaaaattctgtaatgtTcacctggtctgctgggacta	10	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88854765	A	A	88854765	3	1	9	1	0	0	0	0	1	0	0	0	3663	1783	62	5	1193	5	CNR1	6	88854765	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	615429	88854765	82260302	7813	15964											
RNGTT	8732	broad.mit.edu	37	chr6	89322378	89322378	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctctggctacaaaaatGggcaacagcgttttttcctc	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89322378	T	T	89322378	1	4	9	0	1	0	0	0	0	0	0	0	13614	1363	47	2		2	RNGTT	6	89322378	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	467613	89322378	81792689	7814	15965											
RNGTT	8732	broad.mit.edu	37	chr6	89638736	89638736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatttctttcattaaacCgctcacacagacgaataaag	7	9	3	1	rs142870362		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89638736	A	A	89638736	3	1	9	1	0	0	0	0	1	0	0	0	13614	652	23	1	1510	1	RNGTT	6	89638736	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	316358	89638736	81476331	7815	15966											
GABRR2	2570	broad.mit.edu	37	chr6	90009488	90009488	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtcctacctccgaaggcGggtctcatgctgaagtcgtg	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90009488	T	T	90009488	2	4	9	1	0	0	0	0	0	0	0	1	6237	1103	39	1		1	GABRR2	6	90009488	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	370752	90009488	81105579	7816	15967											
RRAGD	58528	broad.mit.edu	37	chr6	90097051	90097051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcagtgctcctgttcccCggaagatcatctcatagtca	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90097051	A	A	90097051	3	1	9	1	0	0	0	0	1	0	0	0	13786	652	23	1	819	1	RRAGD	6	90097051	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87563	90097051	81018016	7817	15968											
RRAGD	58528	broad.mit.edu	37	chr6	90097102	90097102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaagtcaatctgtcctGggaagtcccaaatctgaaaa	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90097102	T	T	90097102	3	4	9	1	0	0	0	0	1	0	0	0	13786	1348	47	2	870	2	RRAGD	6	90097102	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	90097102	81017965	7818	15969											
RRAGD	58528	broad.mit.edu	37	chr6	90097153	90097153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgttggaaacatcttccCggcatatcttattagtgctc	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90097153	A	A	90097153	3	1	9	1	0	0	0	0	1	0	0	0	13786	652	23	1	921	1	RRAGD	6	90097153	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	90097153	81017914	7819	15970											
RRAGD	58528	broad.mit.edu	37	chr6	90097269	90097269	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggcccatgagcaggattctCggcttcacttcagtgctgaa	11	11	3	2	rs142842793	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90097269	A	A	90097269	2	1	9	1	0	0	0	0	0	0	0	1	13786	871	31	3		3	RRAGD	6	90097269	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	116	90097269	81017798	7820	15971											
ANKRD6	22881	broad.mit.edu	37	chr6	90327788	90327788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatggtactgattatgcGggactacaaagttgttggga	12	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90327788	T	T	90327788	1	4	9	0	1	0	0	0	0	0	0	0	685	1131	39	1		1	ANKRD6	6	90327788	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	230519	90327788	80787279	7821	15972											
LYRM2	57226	broad.mit.edu	37	chr6	90347324	90347324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaataataatttaaaatcGgtaacattacaagcaatgat	4	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90347324	T	T	90347324	1	4	9	0	1	0	0	0	0	0	0	0	9208	1131	39	1		1	LYRM2	6	90347324	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19536	90347324	80767743	7822	15973											
LYRM2	57226	broad.mit.edu	37	chr6	90348263	90348263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccgccccgcaggcatcGggccaatctcagagggcgcg	14	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90348263	T	T	90348263	1	4	9	0	1	0	0	0	0	0	0	0	9208	1131	39	1		1	LYRM2	6	90348263	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	939	90348263	80766804	7823	15974											
MDN1	23195	broad.mit.edu	37	chr6	90359834	90359834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttggtccttcgaagcCaaatcttgtctttccgaaat	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90359834	A	A	90359834	3	1	9	1	0	0	0	0	1	0	0	0	9508	595	21	2	699	2	MDN1	6	90359834	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11571	90359834	80755233	7824	15975											
MDN1	23195	broad.mit.edu	37	chr6	90362753	90362753	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgatgagctgtatgaatGgtagactctcggcttctttc	10	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90362753	T	T	90362753	2	4	9	1	0	0	0	0	0	0	0	1	9508	1335	47	2		2	MDN1	6	90362753	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2919	90362753	80752314	7825	15976											
MDN1	23195	broad.mit.edu	37	chr6	90366514	90366514	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctgcagctccacttcCgtgttcctaggaaatccaag	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90366514	A	A	90366514	4	1	9	1	0	0	0	0	0	1	0	0	9508	661	23	1	1648	1	MDN1	6	90366514	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3761	90366514	80748553	7826	15977											
MDN1	23195	broad.mit.edu	37	chr6	90388356	90388356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaagaggtctgacaaagctCgctgtttttgcatgagaatg	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90388356	A	A	90388356	3	1	9	1	0	0	0	0	1	0	0	0	9508	884	31	3	4528	3	MDN1	6	90388356	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21842	90388356	80726711	7827	15978											
MDN1	23195	broad.mit.edu	37	chr6	90402400	90402400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatgagcatagtaagtcGggaaggtggggcccaccgat	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90402400	T	T	90402400	3	4	9	1	0	0	0	0	1	0	0	0	9508	1116	39	1	6601	1	MDN1	6	90402400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14044	90402400	80712667	7828	15979											
MDN1	23195	broad.mit.edu	37	chr6	90405716	90405716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaatccgtgcgtctgtGgggacaaaaagaaagcactg	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90405716	T	T	90405716	1	4	9	0	1	0	0	0	0	0	0	0	9508	1363	47	2		2	MDN1	6	90405716	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3316	90405716	80709351	7829	15980											
MDN1	23195	broad.mit.edu	37	chr6	90424277	90424277	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctacaacagtgctccGggtctctgtgtgtaaagcca	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90424277	T	T	90424277	2	4	9	1	0	0	0	0	0	0	0	1	9508	1115	39	1		1	MDN1	6	90424277	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18561	90424277	80690790	7830	15981											
MDN1	23195	broad.mit.edu	37	chr6	90428440	90428440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagactctcagtcagaccacGgggtttattatgctttgcca	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90428440	T	T	90428440	1	4	9	0	1	0	0	0	0	0	0	0	9508	1131	39	1		1	MDN1	6	90428440	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4163	90428440	80686627	7831	15982											
MDN1	23195	broad.mit.edu	37	chr6	90428501	90428501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacctgctcaaatccaccCagcagctcagtagtatccat	6	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90428501	A	A	90428501	2	1	9	1	0	0	0	0	0	0	0	1	9508	581	21	2		2	MDN1	6	90428501	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	90428501	80686566	7832	15983											
MDN1	23195	broad.mit.edu	37	chr6	90428747	90428747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggaaaggactgagtagccCaactgaaaagacatgccagt	12	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90428747	A	A	90428747	3	1	9	1	0	0	0	0	1	0	0	0	9508	593	21	2	10974	2	MDN1	6	90428747	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	246	90428747	80686320	7833	15984											
MDN1	23195	broad.mit.edu	37	chr6	90432692	90432692	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttttttttgtcctcttcGgttctcattctttcaccata	3	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90432692	T	T	90432692	2	4	9	1	0	0	0	0	0	0	0	1	9508	1103	39	1		1	MDN1	6	90432692	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3945	90432692	80682375	7834	15985											
MDN1	23195	broad.mit.edu	37	chr6	90434935	90434935	+	Missense_Mutation	SNP	G	T	T													tacctgagtgaatctgttaaGgaaagacctgggcaagcctt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90434935	T	T	90434935	3	4	9	1	0	0	0	0	1	0	0	0	9508	1000	35	2	11397	2	MDN1	6	90434935	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2243	90434935	80680132	7835	15986	101	2									
MDN1	23195	broad.mit.edu	37	chr6	90434945	90434945	+	Silent	SNP	G	T	T													aatctgttaaggaaagacctGggcaagcctttcctcccacc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90434945	T	T	90434945	2	4	9	1	0	0	0	0	0	0	0	1	9508	1335	47	2		2	MDN1	6	90434945	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	90434945	80680122	7836	15987	101	2									
MDN1	23195	broad.mit.edu	37	chr6	90472208	90472208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagttcctcaaatgcctccCgtaagggtagccaaataagc	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90472208	A	A	90472208	3	1	9	1	0	0	0	0	1	0	0	0	9508	652	23	1	14952	1	MDN1	6	90472208	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37263	90472208	80642859	7837	15988											
MDN1	23195	broad.mit.edu	37	chr6	90482337	90482337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaggttttgccagtccCggtctctcccaccagcaaca	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90482337	A	A	90482337	3	1	9	1	0	0	0	0	1	0	0	0	9508	652	23	1	15108	1	MDN1	6	90482337	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10129	90482337	80632730	7838	15989											
MDN1	23195	broad.mit.edu	37	chr6	90500033	90500033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcaaccgccatagccaGggtctgaagacttttgcaga	11	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90500033	T	T	90500033	3	4	9	1	0	0	0	0	1	0	0	0	9508	991	35	2	16235	2	MDN1	6	90500033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17696	90500033	80615034	7839	15990											
MDN1	23195	broad.mit.edu	37	chr6	90529266	90529266	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caactcactgcggctcttctCgttcttggctgcgattaacc	8	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90529266	A	A	90529266	4	1	9	1	0	0	0	0	0	1	0	0	9508	893	31	3	17137	3	MDN1	6	90529266	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29233	90529266	80585801	7840	15991											
CASP8AP2	9994	broad.mit.edu	37	chr6	90572588	90572588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcactggagaagatctgaacGagcatcacttcctcattcca	7	12	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90572588	T	T	90572588	3	4	9	1	0	0	0	0	1	0	0	0	2704	1058	37	3	1182	3	CASP8AP2	6	90572588	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43322	90572588	80542479	7841	15992											
CASP8AP2	9994	broad.mit.edu	37	chr6	90576888	90576888	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagtttcgagattcttacCgaacagcaagcatcgagcct	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90576888	A	A	90576888	2	1	9	1	0	0	0	0	0	0	0	1	2704	639	23	1		1	CASP8AP2	6	90576888	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4300	90576888	80538179	7842	15993											
BACH2	60468	broad.mit.edu	37	chr6	90642042	90642042	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgttctcggtttcttcGggacagcagatgaacagtgc	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90642042	T	T	90642042	1	4	9	0	1	0	0	0	0	0	0	0	1289	1131	39	1		1	BACH2	6	90642042	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	65154	90642042	80473025	7843	15994											
BACH2	60468	broad.mit.edu	37	chr6	90718489	90718489	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgctggtcattgaggccCaggaggatgttggtgcagtg	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90718489	A	A	90718489	2	1	9	1	0	0	0	0	0	0	0	1	1289	581	21	2		2	BACH2	6	90718489	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76447	90718489	80396578	7844	15995											
MAP3K7	6885	broad.mit.edu	37	chr6	91246115	91246115	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctacgtcttggctgtcCgttgcctttaaaaagaagaa	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91246115	A	A	91246115	4	1	9	1	0	0	0	0	0	1	0	0	9347	661	23	1	543	1	MAP3K7	6	91246115	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	527626	91246115	79868952	7845	15996											
EPHA7	2045	broad.mit.edu	37	chr6	93982095	93982095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggaaagctcgacactcCgctgcagtactctctccttc	8	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93982095	A	A	93982095	3	1	9	1	0	0	0	0	1	0	0	0	5214	652	23	1	1674	1	EPHA7	6	93982095	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2735980	93982095	77132972	7846	15997											
EPHA7	2045	broad.mit.edu	37	chr6	94124431	94124431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacttaccccattgggtGgagaggaaatccactccaac	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94124431	T	T	94124431	3	4	9	1	0	0	0	0	1	0	0	0	5214	1348	47	2	2908	2	EPHA7	6	94124431	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	142336	94124431	76990636	7847	15998											
KIAA0776	23376	broad.mit.edu	37	chr6	96976507	96976507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactattcagtgctattaccCggtaagtatattttaaagta	7	6	1	0	rs142064586		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96976507	A	A	96976507	2	1	9	1	0	0	0	0	0	0	0	1	8263	666	23	1		1	KIAA0776	6	96976507	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2852076	96976507	74138560	7848	15999											
KIAA0776	23376	broad.mit.edu	37	chr6	96984146	96984146	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggaacttgttaatagcGgacgcttacgaggcactgtg	13	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96984146	T	T	96984146	4	4	9	1	0	0	0	0	0	1	0	0	8263	1117	39	1	712	1	KIAA0776	6	96984146	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7639	96984146	74130921	7849	16000											
KLHL32	114792	broad.mit.edu	37	chr6	97512472	97512472	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttatatttttaagtgtaactGatagttttatttttgttaac	5	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97512472	T	T	97512472	1	4	9	0	1	0	0	0	0	0	0	0	8457	1305	45	3		3	KLHL32	6	97512472	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	528326	97512472	73602595	7850	16001											
COQ3	51805	broad.mit.edu	37	chr6	99817545	99817545	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagctcttctgtttctccCtttaaaacaaactcagcaga	6	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99817545	A	A	99817545	3	1	9	1	0	0	0	0	1	0	0	0	3778	680	24	2	72	2	COQ3	6	99817545	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2305073	99817545	71297522	7851	16002											
COQ3	51805	broad.mit.edu	37	chr6	99817670	99817670	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggggttatagagcattcCtaccactgtttgaactgaca	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99817670	A	A	99817670	4	1	9	1	0	0	0	0	0	1	0	0	3778	690	24	2	197	2	COQ3	6	99817670	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125	99817670	71297397	7852	16003											
COQ3	51805	broad.mit.edu	37	chr6	99823932	99823932	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcttccacaatctcttccaGggaacacactctgtactcta	4	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99823932	C	C	99823932	3	2	9	1	0	0	0	0	1	0	0	0	3778	991	35	4	508	4	COQ3	6	99823932	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6262	99823932	71291135	7853	16004											
SFRS18	25957	broad.mit.edu	37	chr6	99848427	99848427	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtatactaccttgatcGggacttagacttgtgtttgc	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99848427	T	T	99848427	2	4	9	1	0	0	0	0	0	0	0	1	14287	1124	39	1		1	SFRS18	6	99848427	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24495	99848427	71266640	7854	16005											
SFRS18	25957	broad.mit.edu	37	chr6	99856122	99856122	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccttcgcgaatccaagcGggaagagtcctgcgttttac	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99856122	T	T	99856122	2	4	9	1	0	0	0	0	0	0	0	1	14287	1103	39	1		1	SFRS18	6	99856122	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7695	99856122	71258945	7855	16006											
USP45	85015	broad.mit.edu	37	chr6	99958092	99958092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttagttggatctttcaccCgcatctgttatttactgaag	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99958092	A	A	99958092	3	1	9	1	0	0	0	0	1	0	0	0	17203	652	23	1	2507	1	USP45	6	99958092	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101970	99958092	71156975	7856	16007											
CCNC	892	broad.mit.edu	37	chr6	99991543	99991543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagatccatttttacaccCtgataagcctactgactttt	4	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99991543	A	A	99991543	1	1	9	0	1	0	0	0	0	0	0	0	2945	696	24	2		2	CCNC	6	99991543	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33451	99991543	71123524	7857	16008											
CCNC	892	broad.mit.edu	37	chr6	100009499	100009499	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaatctcttgaaatatacCgtagcagtggcaataacttg	8	7	1	2	rs142699138		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100009499	A	A	100009499	2	1	9	1	0	0	0	0	0	0	0	1	2945	639	23	1		1	CCNC	6	100009499	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17956	100009499	71105568	7858	16009											
MCHR2	84539	broad.mit.edu	37	chr6	100395559	100395559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgttataaaccaaaactGgtgttggaattggaatgagc	11	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100395559	T	T	100395559	1	4	9	0	1	0	0	0	0	0	0	0	9476	1363	47	2		2	MCHR2	6	100395559	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	386060	100395559	70719508	7859	16010											
SIM1	6492	broad.mit.edu	37	chr6	100838286	100838286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccttgtgtccttgtgctGggtctggttgcatcctcaga	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100838286	T	T	100838286	3	4	9	1	0	0	0	0	1	0	0	0	14436	1348	47	2	52	2	SIM1	6	100838286	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	442727	100838286	70276781	7860	16011											
ASCC3	10973	broad.mit.edu	37	chr6	100964151	100964151	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatcagttcaggaagggactCgatggaggtccgacccctag	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100964151	A	A	100964151	4	1	9	1	0	0	0	0	0	1	0	0	1037	893	31	3	644	3	ASCC3	6	100964151	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125865	100964151	70150916	7861	16012											
ASCC3	10973	broad.mit.edu	37	chr6	100964162	100964162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggactcgatggaggtcCgacccctagcatgtgggccc	15	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100964162	A	A	100964162	3	1	9	1	0	0	0	0	1	0	0	0	1037	652	23	1	655	1	ASCC3	6	100964162	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	100964162	70150905	7862	16013											
ASCC3	10973	broad.mit.edu	37	chr6	101127443	101127443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcacatataaaatacccGggatatgtggcatgttacat	7	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101127443	T	T	101127443	1	4	9	0	1	0	0	0	0	0	0	0	1037	1131	39	1		1	ASCC3	6	101127443	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	163281	101127443	69987624	7863	16014											
ASCC3	10973	broad.mit.edu	37	chr6	101215218	101215218	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttaaaagccagctgtcCgatctaaaaaaaaaaggcat	6	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101215218	A	A	101215218	4	1	9	1	0	0	0	0	0	1	0	0	1037	661	23	1	5345	1	ASCC3	6	101215218	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87775	101215218	69899849	7864	16015											
ASCC3	10973	broad.mit.edu	37	chr6	101312138	101312138	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtactgcttaaagttcttctCaactccaacgctgattacat	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101312138	A	A	101312138	1	1	9	0	1	0	0	0	0	0	0	0	1037	841	29	3		3	ASCC3	6	101312138	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96920	101312138	69802929	7865	16016											
GRIK2	2898	broad.mit.edu	37	chr6	102074275	102074275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgatcagctgtctcttGgggtggctgccatcttcggg	14	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102074275	T	T	102074275	3	4	9	1	0	0	0	0	1	0	0	0	6840	1348	47	2	314	2	GRIK2	6	102074275	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	762137	102074275	69040792	7866	16017											
HACE1	57531	broad.mit.edu	37	chr6	105192040	105192040	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatactgcttacctgccCgtaacaaactgtaagagaag	7	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105192040	A	A	105192040	2	1	9	1	0	0	0	0	0	0	0	1	7006	639	23	1		1	HACE1	6	105192040	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3117765	105192040	65923027	7867	16018											
HACE1	57531	broad.mit.edu	37	chr6	105219125	105219125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcaaaggcacctcttcCattgctccaaacacatcagt	6	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105219125	A	A	105219125	3	1	9	1	0	0	0	0	1	0	0	0	7006	594	21	2	599	2	HACE1	6	105219125	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27085	105219125	65895942	7868	16019											
HACE1	57531	broad.mit.edu	37	chr6	105280928	105280928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacttaccgtcttgtgacCgttctggcaggcaacatgca	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105280928	A	A	105280928	3	1	9	1	0	0	0	0	1	0	0	0	7006	652	23	1	2282	1	HACE1	6	105280928	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61803	105280928	65834139	7869	16020											
LIN28B	389421	broad.mit.edu	37	chr6	105474267	105474267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggccttgagtcaatacGggtaacaggacctggtggga	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105474267	T	T	105474267	3	4	9	1	0	0	0	0	1	0	0	0	8879	1116	39	1	303	1	LIN28B	6	105474267	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	193339	105474267	65640800	7870	16021											
BVES	11149	broad.mit.edu	37	chr6	105573291	105573291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaagagaatactcagacGgtcatcaactgaggttttat	8	8	4	3	rs141154991		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105573291	T	T	105573291	3	4	9	1	0	0	0	0	1	0	0	0	1585	1116	39	1	588	1	BVES	6	105573291	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99024	105573291	65541776	7871	16022											
BVES	11149	broad.mit.edu	37	chr6	105573399	105573399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaatctggaggcacacGgagtggttcaaacaatcgcc	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105573399	T	T	105573399	3	4	9	1	0	0	0	0	1	0	0	0	1585	1116	39	1	696	1	BVES	6	105573399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108	105573399	65541668	7872	16023											
POPDC3	64208	broad.mit.edu	37	chr6	105609469	105609469	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaacacttggaattctcGggcaaaggttatgctgcgaa	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105609469	T	T	105609469	2	4	9	1	0	0	0	0	0	0	0	1	12351	1124	39	1		1	POPDC3	6	105609469	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36070	105609469	65505598	7873	16024											
POPDC3	64208	broad.mit.edu	37	chr6	105609738	105609738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccaggttgtgcagactGggtgttcatctattaggttc	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105609738	T	T	105609738	3	4	9	1	0	0	0	0	1	0	0	0	12351	1348	47	2	840	2	POPDC3	6	105609738	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	269	105609738	65505329	7874	16025											
PREP	5550	broad.mit.edu	37	chr6	105776758	105776758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtgtccttcttctgacCgctgtaccctacaatgctgc	7	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105776758	A	A	105776758	3	1	9	1	0	0	0	0	1	0	0	0	12580	652	23	1	1001	1	PREP	6	105776758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	167020	105776758	65338309	7875	16026											
PREP	5550	broad.mit.edu	37	chr6	105781310	105781310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtcttgaatgtgaacacCgtcccctcattggtcacgta	8	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105781310	A	A	105781310	2	1	9	1	0	0	0	0	0	0	0	1	12580	639	23	1		1	PREP	6	105781310	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4552	105781310	65333757	7876	16027											
PRDM1	639	broad.mit.edu	37	chr6	106552922	106552922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaatgcccttctaccctcGggtcgtttaccccatccggg	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106552922	T	T	106552922	3	4	9	1	0	0	0	0	1	0	0	0	12556	1116	39	1	918	1	PRDM1	6	106552922	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	771612	106552922	64562145	7877	16028											
ATG5	9474	broad.mit.edu	37	chr6	106682734	106682734	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaatgggttgccgactccCtggtcaccttgcaagatcaa	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106682734	G	G	106682734	1	3	9	0	1	0	0	0	0	0	0	0	1104	696	24	4		4	ATG5	6	106682734	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	129812	106682734	64432333	7878	16029											
AIM1	202	broad.mit.edu	37	chr6	106969084	106969084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccacatggaaaaataccCgcaaaaagagaaaaccaaag	7	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106969084	A	A	106969084	3	1	9	1	0	0	0	0	1	0	0	0	430	652	23	1	2783	1	AIM1	6	106969084	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	286350	106969084	64145983	7879	16030											
AIM1	202	broad.mit.edu	37	chr6	106973163	106973163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtgatatatagtgaaccCgacgtctctgagaagtgcat	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106973163	A	A	106973163	2	1	9	1	0	0	0	0	0	0	0	1	430	639	23	1		1	AIM1	6	106973163	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4079	106973163	64141904	7880	16031											
AIM1	202	broad.mit.edu	37	chr6	106999775	106999775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggagaacagtatatactGgataaaggattttataccag	9	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106999775	T	T	106999775	2	4	9	1	0	0	0	0	0	0	0	1	430	1335	47	2		2	AIM1	6	106999775	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26612	106999775	64115292	7881	16032											
C6orf203	51250	broad.mit.edu	37	chr6	107365611	107365611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactcaattaatgctgtccCaaattttccctctggctcct	4	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107365611	A	A	107365611	1	1	9	0	1	0	0	0	0	0	0	0	2375	609	21	2		2	C6orf203	6	107365611	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	365836	107365611	63749456	7882	16033											
PDSS2	57107	broad.mit.edu	37	chr6	107780353	107780353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctgattccagtgggccGgggacttggaggaccgacca	14	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107780353	T	T	107780353	3	4	9	1	0	0	0	0	1	0	0	0	11788	1116	39	1	1094	1	PDSS2	6	107780353	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	414742	107780353	63334714	7883	16034											
SOBP	55084	broad.mit.edu	37	chr6	107827520	107827520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataagcacaggctattcaGggcttgccactggaaatgga	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107827520	T	T	107827520	3	4	9	1	0	0	0	0	1	0	0	0	15026	1000	35	2	320	2	SOBP	6	107827520	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47167	107827520	63287547	7884	16035											
SOBP	55084	broad.mit.edu	37	chr6	107908380	107908380	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaataactgcgaactacttGtaagaataacatacttacaa	5	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107908380	T	T	107908380	5	4	9	1	0	0	0	0	0	0	1	0	15026	1391	48	3	688	3	SOBP	6	107908380	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	80860	107908380	63206687	7885	16036											
SEC63	11231	broad.mit.edu	37	chr6	108214735	108214735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctgttgctttgactgtGgtaatagcacaggtgtaggt	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108214735	T	T	108214735	3	4	9	1	0	0	0	0	1	0	0	0	14118	1348	47	2	681	2	SEC63	6	108214735	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	306355	108214735	62900332	7886	16037											
SEC63	11231	broad.mit.edu	37	chr6	108214800	108214800	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatttagcagttttcttGggtcctttactcttctgttg	8	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108214800	T	T	108214800	2	4	9	1	0	0	0	0	0	0	0	1	14118	1335	47	2		2	SEC63	6	108214800	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	65	108214800	62900267	7887	16038											
SEC63	11231	broad.mit.edu	37	chr6	108214812	108214812	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttttcttgggtcctttactCttctgttgccatcctccttt	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108214812	A	A	108214812	3	1	9	1	0	0	0	0	1	0	0	0	14118	912	32	3	758	3	SEC63	6	108214812	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	108214812	62900255	7888	16039											
SEC63	11231	broad.mit.edu	37	chr6	108225845	108225845	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcaccttcacggttccGggccattactattagttggc	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108225845	T	T	108225845	2	4	9	1	0	0	0	0	0	0	0	1	14118	1115	39	1		1	SEC63	6	108225845	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11033	108225845	62889222	7889	16040											
SEC63	11231	broad.mit.edu	37	chr6	108227864	108227864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacttaactgctcatcggGggatttgggaaattagccta	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108227864	T	T	108227864	1	4	9	0	1	0	0	0	0	0	0	0	14118	1247	43	2		2	SEC63	6	108227864	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2019	108227864	62887203	7890	16041											
SEC63	11231	broad.mit.edu	37	chr6	108234612	108234612	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattcttcccaatttttccGggactcttcatccgttaaac	4	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108234612	T	T	108234612	2	4	9	1	0	0	0	0	0	0	0	1	14118	1115	39	1		1	SEC63	6	108234612	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6748	108234612	62880455	7891	16042											
SEC63	11231	broad.mit.edu	37	chr6	108234625	108234625	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttccgggactcttcatcCgttaaactagcatcaaaaga	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108234625	A	A	108234625	2	1	9	1	0	0	0	0	0	0	0	1	14118	639	23	1		1	SEC63	6	108234625	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	108234625	62880442	7892	16043											
NR2E1	7101	broad.mit.edu	37	chr6	108492708	108492708	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtggcgaccgcagctcGgggaagcactacggggtcta	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108492708	T	T	108492708	2	4	9	1	0	0	0	0	0	0	0	1	10720	1103	39	1		1	NR2E1	6	108492708	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	258083	108492708	62622359	7893	16044											
NR2E1	7101	broad.mit.edu	37	chr6	108492839	108492839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctgcactgctgggctcCgctctgctgcctcctcactc	11	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108492839	A	A	108492839	1	1	9	0	1	0	0	0	0	0	0	0	10720	667	23	1		1	NR2E1	6	108492839	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	131	108492839	62622228	7894	16045											
NR2E1	7101	broad.mit.edu	37	chr6	108502019	108502019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttattctaggcatgaacGgtgacaacacagattcccag	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108502019	T	T	108502019	3	4	9	1	0	0	0	0	1	0	0	0	10720	1116	39	1	774	1	NR2E1	6	108502019	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9180	108502019	62613048	7895	16046											
NR2E1	7101	broad.mit.edu	37	chr6	108508573	108508573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttacgttctattagccCatcaactatagaagaagtgt	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108508573	A	A	108508573	3	1	9	1	0	0	0	0	1	0	0	0	10720	594	21	2	1098	2	NR2E1	6	108508573	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6554	108508573	62606494	7896	16047											
LACE1	246269	broad.mit.edu	37	chr6	108843569	108843569	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttcagcgcacaatttccCgactcacggaaatgcagact	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108843569	A	A	108843569	2	1	9	1	0	0	0	0	0	0	0	1	8667	644	23	1		1	LACE1	6	108843569	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	334996	108843569	62271498	7897	16048											
ARMC2	84071	broad.mit.edu	37	chr6	109225449	109225449	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaagaaaacattgaaacGgtttgtgctgcttgcacaca	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109225449	T	T	109225449	2	4	9	1	0	0	0	0	0	0	0	1	955	1103	39	1		1	ARMC2	6	109225449	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	381880	109225449	61889618	7898	16049											
ARMC2	84071	broad.mit.edu	37	chr6	109233743	109233743	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacatttttgcctaattcGggccacttgctagtccaggt	10	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109233743	T	T	109233743	2	4	9	1	0	0	0	0	0	0	0	1	955	1103	39	1		1	ARMC2	6	109233743	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8294	109233743	61881324	7899	16050											
ARMC2	84071	broad.mit.edu	37	chr6	109249365	109249365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaacatcagtgcccttccCcagctctgcacggcaatgga	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109249365	A	A	109249365	2	1	9	1	0	0	0	0	0	0	0	1	955	610	22	2		2	ARMC2	6	109249365	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15622	109249365	61865702	7900	16051											
ARMC2	84071	broad.mit.edu	37	chr6	109286207	109286207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactgtttaagagatttGggtcctactgattggcagct	13	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109286207	T	T	109286207	3	4	9	1	0	0	0	0	1	0	0	0	955	1339	47	2	2372	2	ARMC2	6	109286207	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36842	109286207	61828860	7901	16052											
SESN1	27244	broad.mit.edu	37	chr6	109308673	109308673	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtctaccattggtcctGgggcttagtaccttccccct	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109308673	T	T	109308673	1	4	9	0	1	0	0	0	0	0	0	0	14237	1363	47	2		2	SESN1	6	109308673	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	22466	109308673	61806394	7902	16053											
CD164	8763	broad.mit.edu	37	chr6	109690146	109690146	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaccaggacaattcctcCaatgaaactggctgcatcaa	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109690146	A	A	109690146	4	1	9	1	0	0	0	0	0	1	0	0	2999	603	21	2	146	2	CD164	6	109690146	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	381473	109690146	61424921	7903	16054											
MICAL1	64780	broad.mit.edu	37	chr6	109768360	109768360	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctccggtggaagaaatGgccgttgacacagaggcgtt	15	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109768360	T	T	109768360	3	4	9	1	0	0	0	0	1	0	0	0	9662	1348	47	2	1096	2	MICAL1	6	109768360	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78214	109768360	61346707	7904	16055											
MICAL1	64780	broad.mit.edu	37	chr6	109773534	109773534	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctgtgtctcctccacGgtgcgtccattcacaaagtt	9	14	2	0	rs33997889	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109773534	T	T	109773534	2	4	9	1	0	0	0	0	0	0	0	1	9662	1103	39	1		1	MICAL1	6	109773534	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5174	109773534	61341533	7905	16056											
ZBTB24	9841	broad.mit.edu	37	chr6	109802501	109802501	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttgcctggccatcctcGgtcttgggatcatagttctc	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109802501	T	T	109802501	2	4	9	1	0	0	0	0	0	0	0	1	17657	1103	39	1		1	ZBTB24	6	109802501	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28967	109802501	61312566	7906	16057											
FIG4	9896	broad.mit.edu	37	chr6	110048444	110048444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatacccaatgattctgtacGggttactcatcctgatgaag	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110048444	T	T	110048444	3	4	9	1	0	0	0	0	1	0	0	0	5945	1116	39	1	436	1	FIG4	6	110048444	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	245943	110048444	61066623	7907	16058											
FIG4	9896	broad.mit.edu	37	chr6	110062718	110062718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtaaatttgctggcaccCgttttcttaaaagaggtgca	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110062718	A	A	110062718	3	1	9	1	0	0	0	0	1	0	0	0	5945	652	23	1	877	1	FIG4	6	110062718	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14274	110062718	61052349	7908	16059											
FIG4	9896	broad.mit.edu	37	chr6	110112505	110112505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcactaggcctaaggctttGggacagagtgatagacagtg	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110112505	T	T	110112505	1	4	9	0	1	0	0	0	0	0	0	0	5945	1363	47	2		2	FIG4	6	110112505	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49787	110112505	61002562	7909	16060											
GPR6	2830	broad.mit.edu	37	chr6	110300441	110300441	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaccccctgctgcggcGgctctaggagccggcggcgg	19	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110300441	T	T	110300441	2	4	9	1	0	0	0	0	0	0	0	1	6766	1103	39	1		1	GPR6	6	110300441	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	187936	110300441	60814626	7910	16061											
DDO	8528	broad.mit.edu	37	chr6	110734638	110734638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccccaccacacctgcccCgacaactgcaatccgtgctg	8	19	0	0	rs62617073	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110734638	A	A	110734638	3	1	9	1	0	0	0	0	1	0	0	0	4367	652	23	1	1013	1	DDO	6	110734638	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	434197	110734638	60380429	7911	16062											
SLC22A16	85413	broad.mit.edu	37	chr6	110763547	110763547	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaccagattagccaaacGgtaagtgtccttttcgtaat	9	8	0	2	rs35343055	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110763547	T	T	110763547	2	4	9	1	0	0	0	0	0	0	0	1	14560	1103	39	1		1	SLC22A16	6	110763547	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28909	110763547	60351520	7912	16063											
SLC22A16	85413	broad.mit.edu	37	chr6	110777773	110777773	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccaaaagtcaccgatccCagtaggactccaaacataaa	6	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110777773	A	A	110777773	2	1	9	1	0	0	0	0	0	0	0	1	14560	581	21	2		2	SLC22A16	6	110777773	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14226	110777773	60337294	7913	16064											
SLC22A16	85413	broad.mit.edu	37	chr6	110777784	110777784	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgatcccagtaggactcCaaacataaataggggctgga	10	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110777784	A	A	110777784	4	1	9	1	0	0	0	0	0	1	0	0	14560	603	21	2	1271	2	SLC22A16	6	110777784	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	110777784	60337283	7914	16065											
CDK19	23097	broad.mit.edu	37	chr6	110942362	110942362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgcctgaaggccctagcCgtggcttcttgtttggaggc	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110942362	A	A	110942362	3	1	9	1	0	0	0	0	1	0	0	0	3165	652	23	1	194	1	CDK19	6	110942362	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	164578	110942362	60172705	7915	16066											
CDK19	23097	broad.mit.edu	37	chr6	110943334	110943334	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcttcattaaggaattctCgtttggggtatggaatctgg	11	6	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110943334	A	A	110943334	3	1	9	1	0	0	0	0	1	0	0	0	3165	884	31	3	453	3	CDK19	6	110943334	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	972	110943334	60171733	7916	16067											
AMD1	262	broad.mit.edu	37	chr6	111214656	111214656	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggattgcaaacactaacGgttatttaattttttccccc	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111214656	T	T	111214656	1	4	9	0	1	0	0	0	0	0	0	0	566	1131	39	1		1	AMD1	6	111214656	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	271322	111214656	59900411	7917	16068											
SLC16A10	117247	broad.mit.edu	37	chr6	111493901	111493901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccttcttttacagcatGggtaggttctctctccatgg	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111493901	T	T	111493901	3	4	9	1	0	0	0	0	1	0	0	0	14516	1357	47	2	353	2	SLC16A10	6	111493901	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	279245	111493901	59621166	7918	16069											
SLC16A10	117247	broad.mit.edu	37	chr6	111540077	111540077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctgtgtagcatctttGgggccctcattgctgtgtgc	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111540077	T	T	111540077	3	4	9	1	0	0	0	0	1	0	0	0	14516	1348	47	2	1165	2	SLC16A10	6	111540077	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46176	111540077	59574990	7919	16070											
REV3L	5980	broad.mit.edu	37	chr6	111643796	111643796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtatcgccatatacaaccCtagccccccatttcttggta	5	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111643796	A	A	111643796	3	1	9	1	0	0	0	0	1	0	0	0	13348	681	24	2	1093	2	REV3L	6	111643796	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103719	111643796	59471271	7920	16071											
REV3L	5980	broad.mit.edu	37	chr6	111694770	111694770	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtctactttgagaagtttGgggattttttctttttgttt	10	3	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111694770	T	T	111694770	2	4	9	1	0	0	0	0	0	0	0	1	13348	1335	47	2		2	REV3L	6	111694770	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50974	111694770	59420297	7921	16072											
REV3L	5980	broad.mit.edu	37	chr6	111694840	111694840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacgttaccgatcgtgtcCgtttatttgctttgttatgc	11	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111694840	A	A	111694840	3	1	9	1	0	0	0	0	1	0	0	0	13348	652	23	1	4754	1	REV3L	6	111694840	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	111694840	59420227	7922	16073											
REV3L	5980	broad.mit.edu	37	chr6	111695259	111695259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgtgctttgactgttcCgctatgcacacaatctgctg	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111695259	A	A	111695259	2	1	9	1	0	0	0	0	0	0	0	1	13348	639	23	1		1	REV3L	6	111695259	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	419	111695259	59419808	7923	16074											
REV3L	5980	broad.mit.edu	37	chr6	111751560	111751560	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgatcattaaacacccaatgGattttaaatgaaagaaaaga	6	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111751560	A	A	111751560	1	1	9	0	1	0	0	0	0	0	0	0	13348	1189	41	4		4	REV3L	6	111751560	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	56301	111751560	59363507	7924	16075											
TRAF3IP2	10758	broad.mit.edu	37	chr6	111913219	111913219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttccggggaatattctGggattggtttcagcaactga	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111913219	T	T	111913219	3	4	9	1	0	0	0	0	1	0	0	0	16565	1348	47	2	1658	2	TRAF3IP2	6	111913219	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	161659	111913219	59201848	7925	16076											
FYN	2534	broad.mit.edu	37	chr6	112015657	112015657	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatatgagtccattcccCactagaatgtttgctgatcg	8	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112015657	A	A	112015657	2	1	9	1	0	0	0	0	0	0	0	1	6186	581	21	2		2	FYN	6	112015657	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	102438	112015657	59099410	7926	16077											
FYN	2534	broad.mit.edu	37	chr6	112041086	112041086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacggtgagtccttggccccCggctgcgtggaagttgttgt	16	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112041086	A	A	112041086	3	1	9	1	0	0	0	0	1	0	0	0	6186	652	23	1	1648	1	FYN	6	112041086	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25429	112041086	59073981	7927	16078											
C6orf225	619208	broad.mit.edu	37	chr6	112420502	112420502	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtatgccttttcaatttGgaacccagccaaggaggttt	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112420502	T	T	112420502	4	4	9	1	0	0	0	0	0	1	0	0	2381	1349	47	2	18	2	C6orf225	6	112420502	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	379416	112420502	58694565	7928	16079											
LAMA4	3910	broad.mit.edu	37	chr6	112522777	112522777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaagcttcctttgaccCacacagaaaatagagaattt	6	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112522777	A	A	112522777	1	1	9	0	1	0	0	0	0	0	0	0	8680	609	21	2		2	LAMA4	6	112522777	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	102275	112522777	58592290	7929	16080											
HDAC2	3066	broad.mit.edu	37	chr6	114274442	114274442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagaatttagtcttaccCtcaagtctcctgtgccagga	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114274442	A	A	114274442	3	1	9	1	0	0	0	0	1	0	0	0	7074	695	24	2	864	2	HDAC2	6	114274442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1751665	114274442	56840625	7930	16081											
HDAC2	3066	broad.mit.edu	37	chr6	114274492	114274492	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatatttatggaatgatacCgtcattacacgatctgttgt	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114274492	A	A	114274492	2	1	9	1	0	0	0	0	0	0	0	1	7074	639	23	1		1	HDAC2	6	114274492	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	114274492	56840575	7931	16082											
HDAC2	3066	broad.mit.edu	37	chr6	114279851	114279851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatactcagacatgttatctGgtcttattgaccgtagaaat	7	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114279851	T	T	114279851	3	4	9	1	0	0	0	0	1	0	0	0	7074	1348	47	2	1269	2	HDAC2	6	114279851	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5359	114279851	56835216	7932	16083											
HDAC2	3066	broad.mit.edu	37	chr6	114279863	114279863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatctggtcttattgacCgtagaaatttgatatactca	7	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114279863	A	A	114279863	3	1	9	1	0	0	0	0	1	0	0	0	7074	652	23	1	1281	1	HDAC2	6	114279863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	114279863	56835204	7933	16084											
HS3ST5	222537	broad.mit.edu	37	chr6	114378812	114378812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcacttcgcatgtattaGggtctatggccagcttctca	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114378812	T	T	114378812	3	4	9	1	0	0	0	0	1	0	0	0	7435	1000	35	2	394	2	HS3ST5	6	114378812	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98949	114378812	56736255	7934	16085											
COL10A1	1300	broad.mit.edu	37	chr6	116443139	116443139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatacctaaaagacacaccCaacacacccacccatagaag	3	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116443139	A	A	116443139	1	1	9	0	1	0	0	0	0	0	0	0	3698	609	21	2		2	COL10A1	6	116443139	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2064327	116443139	54671928	7935	16086											
DSE	29940	broad.mit.edu	37	chr6	116579915	116579915	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgcgtgtggagtcctcccGgggaccactgttgatgatgg	15	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116579915	T	T	116579915	1	4	9	0	1	0	0	0	0	0	0	0	4814	1131	39	1		1	DSE	6	116579915	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	136776	116579915	54535152	7936	16087											
TSPYL1	7259	broad.mit.edu	37	chr6	116600166	116600166	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagtcatccagaagccCgggatattctgaatgatgta	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116600166	A	A	116600166	2	1	9	1	0	0	0	0	0	0	0	1	16784	639	23	1		1	TSPYL1	6	116600166	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20251	116600166	54514901	7937	16088											
DSE	29940	broad.mit.edu	37	chr6	116757918	116757918	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaagcagatactgtccCgagtccggaacacagctagc	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116757918	A	A	116757918	2	1	9	1	0	0	0	0	0	0	0	1	4814	644	23	1		1	DSE	6	116757918	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	157752	116757918	54357149	7938	16089											
FAM26F	441168	broad.mit.edu	37	chr6	116784509	116784509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttttacatctgtcaccCgatgcctatctccagttagt	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116784509	A	A	116784509	2	1	9	1	0	0	0	0	0	0	0	1	5602	644	23	1		1	FAM26F	6	116784509	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26591	116784509	54330558	7939	16090											
FAM26D	221301	broad.mit.edu	37	chr6	116878993	116878993	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatgatgtgaagatgctGggttggattttgatcacctt	11	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116878993	T	T	116878993	2	4	9	1	0	0	0	0	0	0	0	1	5600	1335	47	2		2	FAM26D	6	116878993	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	94484	116878993	54236074	7940	16091											
ZUFSP	221302	broad.mit.edu	37	chr6	116967014	116967014	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taataatttctgcatttctcGagaaggacatccaggatcaa	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116967014	T	T	116967014	2	4	9	1	0	0	0	0	0	0	0	1	18375	1066	37	3		3	ZUFSP	6	116967014	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	88021	116967014	54148053	7941	16092											
KPNA5	3841	broad.mit.edu	37	chr6	117050811	117050811	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtccaagtggctttaaatGgacttgaaaatattttacgt	8	5	0	1	rs143022169		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117050811	T	T	117050811	4	4	9	1	0	0	0	0	0	1	0	0	8504	1349	47	2	1389	2	KPNA5	6	117050811	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83797	117050811	54064256	7942	16093											
FAM162B	221303	broad.mit.edu	37	chr6	117083213	117083213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttatgtaacaagctttcactCgagctttgtttcttgcggtg	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117083213	A	A	117083213	3	1	9	1	0	0	0	0	1	0	0	0	5521	884	31	3	179	3	FAM162B	6	117083213	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32402	117083213	54031854	7943	16094											
FAM162B	221303	broad.mit.edu	37	chr6	117086322	117086322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttacgggatccgaggcGggatctcctccatcgatttg	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117086322	T	T	117086322	3	4	9	1	0	0	0	0	1	0	0	0	5521	1116	39	1	231	1	FAM162B	6	117086322	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3109	117086322	54028745	7944	16095											
GPRC6A	222545	broad.mit.edu	37	chr6	117128308	117128308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtcactgggcacagtcCgtaaaaatgaaggaaagcga	13	7	1	1	rs145460545	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117128308	A	A	117128308	3	1	9	1	0	0	0	0	1	0	0	0	6794	652	23	1	2236	1	GPRC6A	6	117128308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41986	117128308	53986759	7945	16096											
RFX6	222546	broad.mit.edu	37	chr6	117199128	117199128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagtggtgagactcgccCgcagggtacactgaagcacc	13	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117199128	A	A	117199128	1	1	9	0	1	0	0	0	0	0	0	0	13375	667	23	1		1	RFX6	6	117199128	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	70820	117199128	53915939	7946	16097											
RFX6	222546	broad.mit.edu	37	chr6	117215240	117215240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacaaggtagagttacacCatcttcaagacaaattctct	6	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117215240	A	A	117215240	1	1	9	0	1	0	0	0	0	0	0	0	13375	609	21	2		2	RFX6	6	117215240	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16112	117215240	53899827	7947	16098											
RFX6	222546	broad.mit.edu	37	chr6	117246646	117246646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctttcactgcttctcCgagttcatgctttctggcca	8	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117246646	A	A	117246646	3	1	9	1	0	0	0	0	1	0	0	0	13375	652	23	1	1771	1	RFX6	6	117246646	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31406	117246646	53868421	7948	16099											
ROS1	6098	broad.mit.edu	37	chr6	117631391	117631391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctccaatcttcactatcCgtggactggtatagtctttc	7	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117631391	A	A	117631391	3	1	9	1	0	0	0	0	1	0	0	0	13642	652	23	1	772	1	ROS1	6	117631391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	384745	117631391	53483676	7949	16100											
ROS1	6098	broad.mit.edu	37	chr6	117658378	117658378	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaggtgctattttctccCgtcttataaaccaccactac	6	12	2	1	rs146280016		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117658378	A	A	117658378	2	1	9	1	0	0	0	0	0	0	0	1	13642	639	23	1		1	ROS1	6	117658378	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26987	117658378	53456689	7950	16101											
ROS1	6098	broad.mit.edu	37	chr6	117687297	117687297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattaaatctggctggttcCaaaacagagacactggtttt	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117687297	A	A	117687297	3	1	9	1	0	0	0	0	1	0	0	0	13642	593	21	2	4393	2	ROS1	6	117687297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28919	117687297	53427770	7951	16102											
ROS1	6098	broad.mit.edu	37	chr6	117718233	117718233	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgacttccacagtgtcGggacttgagctctcaatatt	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117718233	T	T	117718233	2	4	9	1	0	0	0	0	0	0	0	1	13642	1103	39	1		1	ROS1	6	117718233	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30936	117718233	53396834	7952	16103											
DCBLD1	285761	broad.mit.edu	37	chr6	117846571	117846571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtagcaggagacatttctGggaatatggtagatggatat	13	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117846571	T	T	117846571	3	4	9	1	0	0	0	0	1	0	0	0	4313	1348	47	2	577	2	DCBLD1	6	117846571	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	128338	117846571	53268496	7953	16104											
DCBLD1	285761	broad.mit.edu	37	chr6	117862163	117862163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagacaatcacaaggccCatcccctcggaagaaacatc	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117862163	A	A	117862163	2	1	9	1	0	0	0	0	0	0	0	1	4313	581	21	2		2	DCBLD1	6	117862163	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15592	117862163	53252904	7954	16105											
DCBLD1	285761	broad.mit.edu	37	chr6	117864303	117864303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggaataaacattacaacGgtggctattccattggtgct	9	7	0	0	rs149598418		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117864303	T	T	117864303	2	4	9	1	0	0	0	0	0	0	0	1	4313	1103	39	1		1	DCBLD1	6	117864303	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2140	117864303	53250764	7955	16106											
GOPC	57120	broad.mit.edu	37	chr6	117884481	117884481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagcaccgtcatctagcGgagtttcacttgcagtgccc	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117884481	T	T	117884481	3	4	9	1	0	0	0	0	1	0	0	0	6637	1116	39	1	67	1	GOPC	6	117884481	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20178	117884481	53230586	7956	16107											
NUS1	116150	broad.mit.edu	37	chr6	118015231	118015231	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgaaggtgctgtctccGgaagatggaaaagcagatat	14	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118015231	T	T	118015231	2	4	9	1	0	0	0	0	0	0	0	1	10872	1103	39	1		1	NUS1	6	118015231	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	130750	118015231	53099836	7957	16108											
SLC35F1	222553	broad.mit.edu	37	chr6	118588163	118588163	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccctcccaatagctcctGgactgttttgtgatcccagt	7	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118588163	T	T	118588163	2	4	9	1	0	0	0	0	0	0	0	1	14702	1335	47	2		2	SLC35F1	6	118588163	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	572932	118588163	52526904	7958	16109											
SLC35F1	222553	broad.mit.edu	37	chr6	118606493	118606493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtggattgtttctcttcCactacaaggtaagttgagtg	10	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118606493	A	A	118606493	3	1	9	1	0	0	0	0	1	0	0	0	14702	594	21	2	1020	2	SLC35F1	6	118606493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18330	118606493	52508574	7959	16110											
C6orf204	387119	broad.mit.edu	37	chr6	118832525	118832525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaacatggcatgttgagccCgtaattcattatcccttatc	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118832525	A	A	118832525	3	1	9	1	0	0	0	0	1	0	0	0	2376	652	23	1	1314	1	C6orf204	6	118832525	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	226032	118832525	52282542	7960	16111											
MCM9	254394	broad.mit.edu	37	chr6	119252726	119252726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacatgttgaaatattcccCgatttccatgttggtctcaa	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119252726	A	A	119252726	3	1	9	1	0	0	0	0	1	0	0	0	9487	652	23	1	1036	1	MCM9	6	119252726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	420201	119252726	51862341	7961	16112											
FAM184A	79632	broad.mit.edu	37	chr6	119281285	119281285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcagaatgtgaagtaccGggcaaaccactcctggcgct	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119281285	T	T	119281285	2	4	9	1	0	0	0	0	0	0	0	1	5557	1115	39	1		1	FAM184A	6	119281285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28559	119281285	51833782	7962	16113											
FAM184A	79632	broad.mit.edu	37	chr6	119282945	119282945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaaaaatgtcttgggccCtttaggtggcactggctgtg	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119282945	A	A	119282945	3	1	9	1	0	0	0	0	1	0	0	0	5557	681	24	2	108	2	FAM184A	6	119282945	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1660	119282945	51832122	7963	16114											
FAM184A	79632	broad.mit.edu	37	chr6	119283029	119283029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaggaatgggatccaggcGgttaggatgtccattgccca	13	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119283029	T	T	119283029	3	4	9	1	0	0	0	0	1	0	0	0	5557	1116	39	1	192	1	FAM184A	6	119283029	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84	119283029	51832038	7964	16115											
FAM184A	79632	broad.mit.edu	37	chr6	119341102	119341102	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgaaaaagagaaaaacGgaactctttcggggggaatg	13	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119341102	T	T	119341102	1	4	9	0	1	0	0	0	0	0	0	0	5557	1131	39	1		1	FAM184A	6	119341102	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	58073	119341102	51773965	7965	16116											
FAM184A	79632	broad.mit.edu	37	chr6	119345551	119345551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatagctcttgtatctccCgtctgtgagcagcttgcaag	9	11	4	1	rs17855022		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119345551	A	A	119345551	3	1	9	1	0	0	0	0	1	0	0	0	5557	652	23	1	2903	1	FAM184A	6	119345551	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4449	119345551	51769516	7966	16117											
CLVS2	134829	broad.mit.edu	37	chr6	123319098	123319098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatcttacgcttcttgcGggctaggaagtttcatcact	8	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123319098	T	T	123319098	3	4	9	1	0	0	0	0	1	0	0	0	3604	1116	39	1	178	1	CLVS2	6	123319098	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3973547	123319098	47795969	7967	16118											
CLVS2	134829	broad.mit.edu	37	chr6	123369816	123369816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattttgtcaatcaaccatGgtatatccatgccctgtaca	5	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123369816	T	T	123369816	3	4	9	1	0	0	0	0	1	0	0	0	3604	1357	47	2	624	2	CLVS2	6	123369816	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50718	123369816	47745251	7968	16119											
CLVS2	134829	broad.mit.edu	37	chr6	123369845	123369845	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccctgtacaccgtgatcCggcctttcctgaaggagaaa	10	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123369845	A	A	123369845	2	1	9	1	0	0	0	0	0	0	0	1	3604	643	23	1		1	CLVS2	6	123369845	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	123369845	47745222	7969	16120											
TRDN	10345	broad.mit.edu	37	chr6	123698761	123698761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgagatggaagcattccCcaccctttactggcgctgcc	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123698761	A	A	123698761	1	1	9	0	1	0	0	0	0	0	0	0	16592	638	22	2		2	TRDN	6	123698761	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	328916	123698761	47416306	7970	16121											
NKAIN2	154215	broad.mit.edu	37	chr6	124604197	124604197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttccttggatatcagtGggcacctatcctggcaaatt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124604197	T	T	124604197	3	4	9	1	0	0	0	0	1	0	0	0	10531	1357	47	2	107	2	NKAIN2	6	124604197	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	905436	124604197	46510870	7971	16122											
TRMT11	60487	broad.mit.edu	37	chr6	126359855	126359855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccaaccaaacagaatcGggaccagtattcacatctgc	6	12	2	1	rs140935001		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126359855	T	T	126359855	3	4	9	1	0	0	0	0	1	0	0	0	16687	1116	39	1	1315	1	TRMT11	6	126359855	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1755658	126359855	44755212	7972	16123											
CENPW	387103	broad.mit.edu	37	chr6	126667416	126667416	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaggacaaacgcttgtgcGagtaaatgtagagtcattaa	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126667416	T	T	126667416	2	4	9	1	0	0	0	0	0	0	0	1	3274	1045	37	3		3	CENPW	6	126667416	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	307561	126667416	44447651	7973	16124											
C6orf174	387104	broad.mit.edu	37	chr6	127765298	127765298	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagaaatggtatagttgtGggtagttctccgcaaggcag	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127765298	T	T	127765298	1	4	9	0	1	0	0	0	0	0	0	0	2368	1348	47	2		2	C6orf174	6	127765298	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1097882	127765298	43349769	7974	16125											
C6orf174	387104	broad.mit.edu	37	chr6	127768641	127768641	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccgagctgggaaaatttcGagaggtgcttcttggaggag	15	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127768641	T	T	127768641	1	4	9	0	1	0	0	0	0	0	0	0	2368	1066	37	3		3	C6orf174	6	127768641	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	3343	127768641	43346426	7975	16126											
C6orf174	387104	broad.mit.edu	37	chr6	127771070	127771070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacatataagcaacagccCgttagcactttgaaatgtaa	6	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127771070	A	A	127771070	1	1	9	0	1	0	0	0	0	0	0	0	2368	667	23	1		1	C6orf174	6	127771070	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2429	127771070	43343997	7976	16127											
C6orf174	387104	broad.mit.edu	37	chr6	127796663	127796663	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctcggtgatgatggtgctCgtgtcggcgatgagccggtc	17	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127796663	A	A	127796663	2	1	9	1	0	0	0	0	0	0	0	1	2368	871	31	3		3	C6orf174	6	127796663	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25593	127796663	43318404	7977	16128											
C6orf174	387104	broad.mit.edu	37	chr6	127797273	127797273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctgctccctcatgagcGggttggccgagccgttgaag	14	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127797273	T	T	127797273	3	4	9	1	0	0	0	0	1	0	0	0	2368	1116	39	1	953	1	C6orf174	6	127797273	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	610	127797273	43317794	7978	16129											
C6orf174	387104	broad.mit.edu	37	chr6	127797415	127797415	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttagccgtagcttgagctCggcctccctagtgctgggag	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127797415	A	A	127797415	4	1	9	1	0	0	0	0	0	1	0	0	2368	893	31	3	1095	3	C6orf174	6	127797415	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	142	127797415	43317652	7979	16130											
THEMIS	387357	broad.mit.edu	37	chr6	128134395	128134395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttcaatggaaagatccCtgacagacaccttcacattg	6	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128134395	A	A	128134395	3	1	9	1	0	0	0	0	1	0	0	0	15983	681	24	2	667	2	THEMIS	6	128134395	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	336980	128134395	42980672	7980	16131											
THEMIS	387357	broad.mit.edu	37	chr6	128134426	128134426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacattgaagggcaaacGgaactgtttacagagctcag	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128134426	T	T	128134426	3	4	9	1	0	0	0	0	1	0	0	0	15983	1116	39	1	698	1	THEMIS	6	128134426	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	128134426	42980641	7981	16132											
LAMA2	3908	broad.mit.edu	37	chr6	129475822	129475822	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgatggcttcttcagaccCaaaggggtaaagtatgcttt	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129475822	A	A	129475822	2	1	9	1	0	0	0	0	0	0	0	1	8678	581	21	2		2	LAMA2	6	129475822	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1341396	129475822	41639245	7982	16133											
LAMA2	3908	broad.mit.edu	37	chr6	129636956	129636956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaatctatttcgaggctcGggaagaaacaggtttctcta	10	8	2	1	rs148597169		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129636956	T	T	129636956	3	4	9	1	0	0	0	0	1	0	0	0	8678	1116	39	1	3887	1	LAMA2	6	129636956	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	161134	129636956	41478111	7983	16134											
LAMA2	3908	broad.mit.edu	37	chr6	129637234	129637234	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccatagaactgtgaccCgagaagacttcttggatata	10	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129637234	A	A	129637234	2	1	9	1	0	0	0	0	0	0	0	1	8678	644	23	1		1	LAMA2	6	129637234	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	278	129637234	41477833	7984	16135											
LAMA2	3908	broad.mit.edu	37	chr6	129670502	129670502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgcacggcttgtccacGgggatatgaaggccagtact	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129670502	T	T	129670502	3	4	9	1	0	0	0	0	1	0	0	0	8678	1116	39	1	4618	1	LAMA2	6	129670502	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33268	129670502	41444565	7985	16136											
LAMA2	3908	broad.mit.edu	37	chr6	129799922	129799922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatatactcagtagtccCgattatgttggtgttaccaa	7	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129799922	A	A	129799922	2	1	9	1	0	0	0	0	0	0	0	1	8678	639	23	1		1	LAMA2	6	129799922	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	129420	129799922	41315145	7986	16137											
LAMA2	3908	broad.mit.edu	37	chr6	129837376	129837376	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaaccagtattccgttcCgaggttgcatcagatccctg	8	12	1	1	rs121913571		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129837376	A	A	129837376	2	1	9	1	0	0	0	0	0	0	0	1	8678	644	23	1		1	LAMA2	6	129837376	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37454	129837376	41277691	7987	16138											
EPB41L2	2037	broad.mit.edu	37	chr6	131186748	131186748	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcggtcagtaacgtgccCgaatcaccaccagccccgcc	10	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131186748	A	A	131186748	2	1	9	1	0	0	0	0	0	0	0	1	5195	639	23	1		1	EPB41L2	6	131186748	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1349372	131186748	39928319	7988	16139											
EPB41L2	2037	broad.mit.edu	37	chr6	131215535	131215535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatagtcttttcgctgccCggtggtttggcagtttgaat	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131215535	A	A	131215535	3	1	9	1	0	0	0	0	1	0	0	0	5195	652	23	1	1621	1	EPB41L2	6	131215535	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28787	131215535	39899532	7989	16140											
EPB41L2	2037	broad.mit.edu	37	chr6	131277230	131277230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcttgtttcttctgagcCatttcttcagcatcaccctt	4	13	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131277230	A	A	131277230	3	1	9	1	0	0	0	0	1	0	0	0	5195	594	21	2	2693	2	EPB41L2	6	131277230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61695	131277230	39837837	7990	16141											
EPB41L2	2037	broad.mit.edu	37	chr6	131277419	131277419	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaaatacccctgctctcCgatgtttccttctctctctt	5	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131277419	A	A	131277419	2	1	9	1	0	0	0	0	0	0	0	1	5195	639	23	1		1	EPB41L2	6	131277419	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	189	131277419	39837648	7991	16142											
ENPP3	5169	broad.mit.edu	37	chr6	131971142	131971142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatagctcctaaatgttcGggccctatttcctttacttt	6	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131971142	T	T	131971142	1	4	9	0	1	0	0	0	0	0	0	0	5173	1131	39	1		1	ENPP3	6	131971142	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	693723	131971142	39143925	7992	16143											
ENPP1	5167	broad.mit.edu	37	chr6	132194172	132194172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgacattctatttggaccCtcagtggcaacttgcattgt	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132194172	A	A	132194172	3	1	9	1	0	0	0	0	1	0	0	0	5171	681	24	2	1605	2	ENPP1	6	132194172	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	223030	132194172	38920895	7993	16144											
ENPP1	5167	broad.mit.edu	37	chr6	132201162	132201162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctttggacatcctatacCgtggacagaaatgcaagtat	8	11	0	1	rs142835743		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132201162	A	A	132201162	2	1	9	1	0	0	0	0	0	0	0	1	5171	639	23	1		1	ENPP1	6	132201162	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6990	132201162	38913905	7994	16145											
MOXD1	26002	broad.mit.edu	37	chr6	132636821	132636821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgaactgaagttgttcCataatgtctggaatacttgc	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132636821	A	A	132636821	3	1	9	1	0	0	0	0	1	0	0	0	9814	594	21	2	392	2	MOXD1	6	132636821	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	435659	132636821	38478246	7995	16146											
STX7	8417	broad.mit.edu	37	chr6	132824637	132824637	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctctgggccaactgggcGgggtcaccaccaactcctgg	12	15	2	0	rs140215590		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132824637	T	T	132824637	2	4	9	1	0	0	0	0	0	0	0	1	15468	1103	39	1		1	STX7	6	132824637	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	187816	132824637	38290430	7996	16147											
STX7	8417	broad.mit.edu	37	chr6	132824654	132824654	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggggtcaccaccaactcCtggagtgtaagacatggttg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132824654	A	A	132824654	4	1	9	1	0	0	0	0	0	1	0	0	15468	690	24	2	805	2	STX7	6	132824654	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	132824654	38290413	7997	16148											
TAAR8	83551	broad.mit.edu	37	chr6	132873952	132873952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacacggcgtttagctttGggtctttgctggctgtattt	12	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132873952	T	T	132873952	3	4	9	1	0	0	0	0	1	0	0	0	15612	1348	47	2	123	2	TAAR8	6	132873952	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49298	132873952	38241115	7998	16149											
TAAR8	83551	broad.mit.edu	37	chr6	132874263	132874263	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctatgctaccaagttcacCgtgtctgtgtcgggaatttg	11	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132874263	A	A	132874263	2	1	9	1	0	0	0	0	0	0	0	1	15612	639	23	1		1	TAAR8	6	132874263	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	311	132874263	38240804	7999	16150											
TAAR8	83551	broad.mit.edu	37	chr6	132874275	132874275	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcaccgtgtctgtgtcGggaatttgcatcagcgtgtc	12	9	3	0	rs145344024	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132874275	T	T	132874275	2	4	9	1	0	0	0	0	0	0	0	1	15612	1103	39	1		1	TAAR8	6	132874275	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	132874275	38240792	8000	16151											
TAAR6	319100	broad.mit.edu	37	chr6	132891555	132891555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttctcgccgggatcccGggtgattctgtacatagtgt	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132891555	T	T	132891555	3	4	9	1	0	0	0	0	1	0	0	0	15611	1116	39	1	97	1	TAAR6	6	132891555	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17280	132891555	38223512	8001	16152											
TAAR6	319100	broad.mit.edu	37	chr6	132891859	132891859	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcgacaggtacattgcGgttactgaccccctggtcta	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132891859	T	T	132891859	2	4	9	1	0	0	0	0	0	0	0	1	15611	1103	39	1		1	TAAR6	6	132891859	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	304	132891859	38223208	8002	16153											
TAAR6	319100	broad.mit.edu	37	chr6	132892312	132892312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattaattgatgcctttatGggctttataacccctgcctg	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132892312	T	T	132892312	3	4	9	1	0	0	0	0	1	0	0	0	15611	1348	47	2	854	2	TAAR6	6	132892312	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	453	132892312	38222755	8003	16154											
TAAR5	9038	broad.mit.edu	37	chr6	132910733	132910733	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagatgaccaactggatgccCagagtatgtactgtcctggg	12	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132910733	A	A	132910733	2	1	9	1	0	0	0	0	0	0	0	1	15610	581	21	2		2	TAAR5	6	132910733	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18421	132910733	38204334	8004	16155											
VNN2	8875	broad.mit.edu	37	chr6	133073854	133073854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaactccggcttttcaGggacattaaactgaggctca	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133073854	T	T	133073854	3	4	9	1	0	0	0	0	1	0	0	0	17310	1000	35	2	1006	2	VNN2	6	133073854	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	163121	133073854	38041213	8005	16156											
C6orf192	116843	broad.mit.edu	37	chr6	133091347	133091347	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttaaaaacccttcctacGgtgatgtttaaggccaggag	9	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133091347	T	T	133091347	1	4	9	0	1	0	0	0	0	0	0	0	2372	1131	39	1		1	C6orf192	6	133091347	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	17493	133091347	38023720	8006	16157											
RPS12	6206	broad.mit.edu	37	chr6	133136008	133136008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaggactgggtcaaacGggtcgccgtaagcgcgtctg	16	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133136008	T	T	133136008	1	4	9	0	1	0	0	0	0	0	0	0	13733	1131	39	1		1	RPS12	6	133136008	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	44661	133136008	37979059	8007	16158											
RPS12	6206	broad.mit.edu	37	chr6	133138025	133138025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgattacagccaccttttGggtttcatttaattttggta	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133138025	T	T	133138025	1	4	9	0	1	0	0	0	0	0	0	0	13733	1363	47	2		2	RPS12	6	133138025	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2017	133138025	37977042	8008	16159											
RPS12	6206	broad.mit.edu	37	chr6	133138165	133138165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacagagaggggaaacccCgtaaagtggttggttgcagt	15	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133138165	A	A	133138165	3	1	9	1	0	0	0	0	1	0	0	0	13733	652	23	1	315	1	RPS12	6	133138165	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140	133138165	37976902	8009	16160											
RPS12	6206	broad.mit.edu	37	chr6	133138210	133138210	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtagttaaggtaagtcacCgtttattctagggatgaagg	12	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133138210	A	A	133138210	1	1	9	0	1	0	0	0	0	0	0	0	13733	667	23	1		1	RPS12	6	133138210	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	133138210	37976857	8010	16161											
EYA4	2070	broad.mit.edu	37	chr6	133777759	133777759	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagccacgactggagatGgagcgcttgacacttttact	10	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133777759	T	T	133777759	4	4	9	1	0	0	0	0	0	1	0	0	5374	1349	47	2	361	2	EYA4	6	133777759	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	639549	133777759	37337308	8011	16162											
EYA4	2070	broad.mit.edu	37	chr6	133789885	133789885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggtacagatcttcaccCaggtgaaatacttttatatg	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133789885	A	A	133789885	1	1	9	0	1	0	0	0	0	0	0	0	5374	609	21	2		2	EYA4	6	133789885	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12126	133789885	37325182	8012	16163											
EYA4	2070	broad.mit.edu	37	chr6	133802461	133802461	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagttctgactgacttgtgTgtgcttgggattataaatct	10	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133802461	G	G	133802461	1	3	9	0	1	0	0	0	0	0	0	0	5374	1711	59	5		5	EYA4	6	133802461	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	12576	133802461	37312606	8013	16164											
EYA4	2070	broad.mit.edu	37	chr6	133849874	133849874	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacacagcacaacatgccCttctggaggatatccagtca	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133849874	A	A	133849874	2	1	9	1	0	0	0	0	0	0	0	1	5374	668	24	2		2	EYA4	6	133849874	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47413	133849874	37265193	8014	16165											
EYA4	2070	broad.mit.edu	37	chr6	133849914	133849914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagacctcctggctctcCaccaagcactggaattagag	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133849914	A	A	133849914	3	1	9	1	0	0	0	0	1	0	0	0	5374	594	21	2	2070	2	EYA4	6	133849914	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	133849914	37265153	8015	16166											
SGK1	6446	broad.mit.edu	37	chr6	134619164	134619164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctgggactgcagctccCgatctcttcatacagctgcc	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134619164	A	A	134619164	1	1	9	0	1	0	0	0	0	0	0	0	14320	667	23	1		1	SGK1	6	134619164	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	769250	134619164	36495903	8016	16167											
SGK1	6446	broad.mit.edu	37	chr6	134619375	134619375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcagcttctcctggcccCgagtctccagctgccgccta	9	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134619375	A	A	134619375	1	1	9	0	1	0	0	0	0	0	0	0	14320	667	23	1		1	SGK1	6	134619375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	211	134619375	36495692	8017	16168											
SGK1	6446	broad.mit.edu	37	chr6	134638643	134638643	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatagatccaggttggcaccCgcctggttagtgcatatctg	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134638643	A	A	134638643	1	1	9	0	1	0	0	0	0	0	0	0	14320	667	23	1		1	SGK1	6	134638643	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	19268	134638643	36476424	8018	16169											
AHI1	54806	broad.mit.edu	37	chr6	135611569	135611569	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttccccttacctctattaGagtgacttttctgcctgctt	5	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135611569	T	T	135611569	3	4	9	1	0	0	0	0	1	0	0	0	413	933	33	3	18	3	AHI1	6	135611569	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	972926	135611569	35503498	8019	16170											
AHI1	54806	broad.mit.edu	37	chr6	135611607	135611607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcttgttcttcctcatcCgtgtatccattatgtgtcct	6	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135611607	A	A	135611607	3	1	9	1	0	0	0	0	1	0	0	0	413	652	23	1	56	1	AHI1	6	135611607	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	135611607	35503460	8020	16171											
AHI1	54806	broad.mit.edu	37	chr6	135679326	135679326	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttctatgctgataatccCtgtggaaagaaaacattgtg	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135679326	A	A	135679326	5	1	9	1	0	0	0	0	0	0	1	0	413	695	24	2	505	2	AHI1	6	135679326	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	67719	135679326	35435741	8021	16172											
AHI1	54806	broad.mit.edu	37	chr6	135754219	135754219	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgaacatcaaactgtcGgaccaatatggcagaatctt	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135754219	T	T	135754219	2	4	9	1	0	0	0	0	0	0	0	1	413	1124	39	1		1	AHI1	6	135754219	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	74893	135754219	35360848	8022	16173											
AHI1	54806	broad.mit.edu	37	chr6	135754263	135754263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctcaactttccatatcCgtatcatggaatcatagcat	4	11	4	0	rs121434351		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135754263	A	A	135754263	3	1	9	1	0	0	0	0	1	0	0	0	413	652	23	1	1535	1	AHI1	6	135754263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	135754263	35360804	8023	16174											
AHI1	54806	broad.mit.edu	37	chr6	135778732	135778732	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttaagtctatcagttcGgtgaatgtaaactcccaaga	8	8	2	3	rs121434348		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135778732	T	T	135778732	2	4	9	1	0	0	0	0	0	0	0	1	413	1124	39	1		1	AHI1	6	135778732	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24469	135778732	35336335	8024	16175											
AHI1	54806	broad.mit.edu	37	chr6	135778788	135778788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaacatttgggataaaccGggctatctcggcttgttatt	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135778788	T	T	135778788	3	4	9	1	0	0	0	0	1	0	0	0	413	1116	39	1	2736	1	AHI1	6	135778788	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	135778788	35336279	8025	16176											
PDE7B	27115	broad.mit.edu	37	chr6	136502475	136502475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaaggttagtagtgatcCaacagctgagatttcattgc	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136502475	A	A	136502475	1	1	9	0	1	0	0	0	0	0	0	0	11746	609	21	2		2	PDE7B	6	136502475	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	723687	136502475	34612592	8026	16177											
BCLAF1	9774	broad.mit.edu	37	chr6	136597539	136597539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagagcttcctgatcttccCattctccctctgccctccct	4	19	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136597539	A	A	136597539	3	1	9	1	0	0	0	0	1	0	0	0	1388	595	21	2	1674	2	BCLAF1	6	136597539	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95064	136597539	34517528	8027	16178											
MAP7	9053	broad.mit.edu	37	chr6	136677898	136677898	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaactggctttccatttccCggagcgtttgttgtacatgg	10	11	0	0	rs149970196		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136677898	A	A	136677898	2	1	9	1	0	0	0	0	0	0	0	1	9358	639	23	1		1	MAP7	6	136677898	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80359	136677898	34437169	8028	16179											
MAP7	9053	broad.mit.edu	37	chr6	136709480	136709480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaaagaaggaaacaccCtgttactttcaggaaaataa	8	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136709480	A	A	136709480	1	1	9	0	1	0	0	0	0	0	0	0	9358	696	24	2		2	MAP7	6	136709480	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31582	136709480	34405587	8029	16180											
MAP3K5	4217	broad.mit.edu	37	chr6	136883733	136883733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtaattctttctctttcCgaaccaattcttccagtaat	3	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136883733	A	A	136883733	3	1	9	1	0	0	0	0	1	0	0	0	9345	652	23	1	358	1	MAP3K5	6	136883733	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	174253	136883733	34231334	8030	16181											
MAP3K5	4217	broad.mit.edu	37	chr6	136963691	136963691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagaggcactaaaattcCactcatgtatacctttctag	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136963691	A	A	136963691	3	1	9	1	0	0	0	0	1	0	0	0	9345	595	21	2	2395	2	MAP3K5	6	136963691	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79958	136963691	34151376	8031	16182											
MAP3K5	4217	broad.mit.edu	37	chr6	136977663	136977663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgttcccatgtatccCagtctaattctgtaaatgta	5	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136977663	A	A	136977663	1	1	9	0	1	0	0	0	0	0	0	0	9345	609	21	2		2	MAP3K5	6	136977663	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13972	136977663	34137404	8032	16183											
MAP3K5	4217	broad.mit.edu	37	chr6	137018427	137018427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agacttcgatattatctactCgctgccgaattcttgccaac	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137018427	A	A	137018427	3	1	9	1	0	0	0	0	1	0	0	0	9345	884	31	3	3323	3	MAP3K5	6	137018427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40764	137018427	34096640	8033	16184											
MAP3K5	4217	broad.mit.edu	37	chr6	137018514	137018514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcattgagtatagattccCggaagtactggctggtaaaa	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137018514	A	A	137018514	3	1	9	1	0	0	0	0	1	0	0	0	9345	652	23	1	3410	1	MAP3K5	6	137018514	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	137018514	34096553	8034	16185											
PEX7	5191	broad.mit.edu	37	chr6	137191043	137191043	+	Missense_Mutation	SNP	G	T	T													tttagaatttgctggtgaccGgggcggttgactgtagtttg					rs121909152		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137191043	T	T	137191043	3	4	9	1	0	0	0	0	1	0	0	0	11846	1116	39	1	675	1	PEX7	6	137191043	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	172529	137191043	33924024	8035	16186	102	2									
PEX7	5191	broad.mit.edu	37	chr6	137191048	137191048	+	Silent	SNP	G	T	T													aatttgctggtgaccggggcGgttgactgtagtttgagagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137191048	T	T	137191048	2	4	9	1	0	0	0	0	0	0	0	1	11846	1103	39	1		1	PEX7	6	137191048	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5	137191048	33924019	8036	16187	102	2									
PEX7	5191	broad.mit.edu	37	chr6	137234612	137234612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggtggctgactgttcttGggatgaaacaataaagatct	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137234612	T	T	137234612	3	4	9	1	0	0	0	0	1	0	0	0	11846	1357	47	2	958	2	PEX7	6	137234612	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43564	137234612	33880455	8037	16188											
IL20RA	53832	broad.mit.edu	37	chr6	137325670	137325670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattcactctgcccttaaaGggaactgaatctgttctaga	7	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137325670	T	T	137325670	1	4	9	0	1	0	0	0	0	0	0	0	7738	1015	35	2		2	IL20RA	6	137325670	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	91058	137325670	33789397	8038	16189											
IL20RA	53832	broad.mit.edu	37	chr6	137325836	137325836	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacagaaaaaagaaacacGgtaatagatacgggcaaaac	8	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137325836	T	T	137325836	2	4	9	1	0	0	0	0	0	0	0	1	7738	1103	39	1		1	IL20RA	6	137325836	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	166	137325836	33789231	8039	16190											
IFNGR1	3459	broad.mit.edu	37	chr6	137519538	137519538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagtcagatggctgcccGggaccacgtcaggaatattt	13	9	2	1	rs148158267		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137519538	T	T	137519538	3	4	9	1	0	0	0	0	1	0	0	0	7619	1116	39	1	373	1	IFNGR1	6	137519538	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	193702	137519538	33595529	8040	16191											
IFNGR1	3459	broad.mit.edu	37	chr6	137524780	137524780	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctaactggcactgaatctCgtcacaatcatcttccttct	5	14	5	1	rs55666220		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137524780	A	A	137524780	4	1	9	1	0	0	0	0	0	1	0	0	7619	893	31	3	892	3	IFNGR1	6	137524780	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5242	137524780	33590287	8041	16192											
OLIG3	167826	broad.mit.edu	37	chr6	137815333	137815333	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggggatgcggccctacCgtggggaggctttaggcggg	19	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137815333	A	A	137815333	1	1	9	0	1	0	0	0	0	0	0	0	10956	667	23	1		1	OLIG3	6	137815333	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	290553	137815333	33299734	8042	16193											
TNFAIP3	7128	broad.mit.edu	37	chr6	138196885	138196885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagacacacccatggccCgaagtggacttcagtacaac	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138196885	A	A	138196885	2	1	9	1	0	0	0	0	0	0	0	1	16397	644	23	1		1	TNFAIP3	6	138196885	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	381552	138196885	32918182	8043	16194											
KIAA1244	57221	broad.mit.edu	37	chr6	138559704	138559704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcataaacactgctgtgcGggcaactctcagtcaaatgc	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138559704	T	T	138559704	3	4	9	1	0	0	0	0	1	0	0	0	8287	1116	39	1	501	1	KIAA1244	6	138559704	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	362819	138559704	32555363	8044	16195											
KIAA1244	57221	broad.mit.edu	37	chr6	138584486	138584486	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcagcagaaaaggactcGggcaggtccgacgtgtcaga	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138584486	T	T	138584486	2	4	9	1	0	0	0	0	0	0	0	1	8287	1103	39	1		1	KIAA1244	6	138584486	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24782	138584486	32530581	8045	16196											
KIAA1244	57221	broad.mit.edu	37	chr6	138617994	138617994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcgccctccacctgttcCgcctggggaatgccatgctg	11	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138617994	A	A	138617994	3	1	9	1	0	0	0	0	1	0	0	0	8287	652	23	1	3632	1	KIAA1244	6	138617994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33508	138617994	32497073	8046	16197											
KIAA1244	57221	broad.mit.edu	37	chr6	138640892	138640892	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccttcctgtgatgtcCgtttggctccgccggagcca	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138640892	A	A	138640892	2	1	9	1	0	0	0	0	0	0	0	1	8287	639	23	1		1	KIAA1244	6	138640892	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22898	138640892	32474175	8047	16198											
KIAA1244	57221	broad.mit.edu	37	chr6	138657520	138657520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagcccgcagtgttccCgtgcatcagtcagctgacct	9	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138657520	A	A	138657520	3	1	9	1	0	0	0	0	1	0	0	0	8287	652	23	1	6565	1	KIAA1244	6	138657520	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16628	138657520	32457547	8048	16199											
ECT2L	345930	broad.mit.edu	37	chr6	139175279	139175279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtggacttcttcgtgcccCttggagcatcaggttagctc	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139175279	A	A	139175279	3	1	9	1	0	0	0	0	1	0	0	0	4942	681	24	2	1216	2	ECT2L	6	139175279	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	517759	139175279	31939788	8049	16200											
REPS1	85021	broad.mit.edu	37	chr6	139237103	139237103	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgttatcaggcgacgttcCtgaatgagacctgcaaaatt	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139237103	A	A	139237103	4	1	9	1	0	0	0	0	0	1	0	0	13336	690	24	2	806	2	REPS1	6	139237103	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61824	139237103	31877964	8050	16201											
REPS1	85021	broad.mit.edu	37	chr6	139266668	139266668	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatgtacgaggctgaacCgtatcatggcttacggatcc	12	10	1	2	rs116376647	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139266668	A	A	139266668	2	1	9	1	0	0	0	0	0	0	0	1	13336	639	23	1		1	REPS1	6	139266668	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29565	139266668	31848399	8051	16202											
C6orf115	58527	broad.mit.edu	37	chr6	139363885	139363885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagttaagcgtgaaatttGgggtcctcttccgtgatgat	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139363885	T	T	139363885	3	4	9	1	0	0	0	0	1	0	0	0	2345	1348	47	2	97	2	C6orf115	6	139363885	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97217	139363885	31751182	8052	16203											
TXLNB	167838	broad.mit.edu	37	chr6	139609915	139609915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctctggtggttggactGgggttggagaatcctggcca	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139609915	T	T	139609915	3	4	9	1	0	0	0	0	1	0	0	0	16914	1348	47	2	1968	2	TXLNB	6	139609915	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	246030	139609915	31505152	8053	16204											
NMBR	4829	broad.mit.edu	37	chr6	142409474	142409474	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccttgccaaacatccactCgtcgaagaagtagcgcgagg	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142409474	A	A	142409474	4	1	9	1	0	0	0	0	0	1	0	0	10582	893	31	3	862	3	NMBR	6	142409474	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2799559	142409474	28705593	8054	16205											
GPR126	57211	broad.mit.edu	37	chr6	142741067	142741067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaatggtgcagatctgtGggaggaatggcaagagaagc	17	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142741067	T	T	142741067	3	4	9	1	0	0	0	0	1	0	0	0	6705	1348	47	2	3231	2	GPR126	6	142741067	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	331593	142741067	28374000	8055	16206											
HIVEP2	3097	broad.mit.edu	37	chr6	143081489	143081489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtcataagctgagtaactCgaatacttggcaaagtaacc	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143081489	A	A	143081489	3	1	9	1	0	0	0	0	1	0	0	0	7254	884	31	3	1412	3	HIVEP2	6	143081489	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	340422	143081489	28033578	8056	16207											
HIVEP2	3097	broad.mit.edu	37	chr6	143091992	143091992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtctgatggaaactttGgaagaaggttctttgggtgt	14	4	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143091992	T	T	143091992	3	4	9	1	0	0	0	0	1	0	0	0	7254	1348	47	2	3480	2	HIVEP2	6	143091992	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10503	143091992	28023075	8057	16208											
HIVEP2	3097	broad.mit.edu	37	chr6	143092037	143092037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgctcctgaataacatGggtaggtctgctctttcgtg	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143092037	T	T	143092037	3	4	9	1	0	0	0	0	1	0	0	0	7254	1348	47	2	3525	2	HIVEP2	6	143092037	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	143092037	28023030	8058	16209											
HIVEP2	3097	broad.mit.edu	37	chr6	143093845	143093845	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccctgcaatggcaccacGggatccatgaaatattctcc	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143093845	T	T	143093845	2	4	9	1	0	0	0	0	0	0	0	1	7254	1103	39	1		1	HIVEP2	6	143093845	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1808	143093845	28021222	8059	16210											
HIVEP2	3097	broad.mit.edu	37	chr6	143094707	143094707	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcttcctttactgtgcGggctcagaaggttgagcgat	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143094707	T	T	143094707	3	4	9	1	0	0	0	0	1	0	0	0	7254	1116	39	1	6195	1	HIVEP2	6	143094707	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	862	143094707	28020360	8060	16211											
ADAT2	134637	broad.mit.edu	37	chr6	143771637	143771637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacgtttgctcaaatgccGgggtcgggttgagggctgga	17	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143771637	T	T	143771637	1	4	9	0	1	0	0	0	0	0	0	0	285	1131	39	1		1	ADAT2	6	143771637	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	676930	143771637	27343430	8061	16212											
ADAT2	134637	broad.mit.edu	37	chr6	143771689	143771689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcagcatctacctcccGggctcctcaccatgtgcatc	7	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143771689	T	T	143771689	1	4	9	0	1	0	0	0	0	0	0	0	285	1131	39	1		1	ADAT2	6	143771689	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	143771689	27343378	8062	16213											
PEX3	8504	broad.mit.edu	37	chr6	143772255	143772255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcacggtccttggaggtGggtgacaacgtgcttgaaag	17	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143772255	T	T	143772255	1	4	9	0	1	0	0	0	0	0	0	0	11842	1363	47	2		2	PEX3	6	143772255	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	566	143772255	27342812	8063	16214											
PHACTR2	9749	broad.mit.edu	37	chr6	144033158	144033158	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctttatacagttgacGgactggacaaagcttctata	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144033158	T	T	144033158	4	4	9	1	0	0	0	0	0	1	0	0	11905	1117	39	1	75	1	PHACTR2	6	144033158	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	260903	144033158	27081909	8064	16215											
PHACTR2	9749	broad.mit.edu	37	chr6	144033196	144033196	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcaaactcagatggcccCacagcaggttcccaaacacc	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144033196	A	A	144033196	2	1	9	1	0	0	0	0	0	0	0	1	11905	581	21	2		2	PHACTR2	6	144033196	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	144033196	27081871	8065	16216											
PHACTR2	9749	broad.mit.edu	37	chr6	144033228	144033228	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaaacacctcccttcaaaaGaaaggggaaactatccacca	5	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144033228	A	A	144033228	3	1	9	1	0	0	0	0	1	0	0	0	11905	942	33	4	145	4	PHACTR2	6	144033228	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	144033228	27081839	8066	16217											
LTV1	84946	broad.mit.edu	37	chr6	144178406	144178406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgaattgttgctatcttGggaattactgcttaattttt	8	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144178406	T	T	144178406	1	4	9	0	1	0	0	0	0	0	0	0	9168	1363	47	2		2	LTV1	6	144178406	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	145178	144178406	26936661	8067	16218											
LTV1	84946	broad.mit.edu	37	chr6	144179006	144179006	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagactgtatgtctgtgccCggaaaaactcacagagctat	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144179006	A	A	144179006	2	1	9	1	0	0	0	0	0	0	0	1	9168	639	23	1		1	LTV1	6	144179006	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	600	144179006	26936061	8068	16219											
LTV1	84946	broad.mit.edu	37	chr6	144184338	144184338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaatggcagtgatcttcCtaaagtatcaactcagccac	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144184338	A	A	144184338	3	1	9	1	0	0	0	0	1	0	0	0	9168	681	24	2	1270	2	LTV1	6	144184338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5332	144184338	26930729	8069	16220											
PLAGL1	5325	broad.mit.edu	37	chr6	144263202	144263202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaagctacttgcaagccCgttctgggcagaagctccta	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144263202	A	A	144263202	3	1	9	1	0	0	0	0	1	0	0	0	12114	652	23	1	644	1	PLAGL1	6	144263202	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78864	144263202	26851865	8070	16221											
UTRN	7402	broad.mit.edu	37	chr6	144782494	144782494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggtaacatatatcttcCatgttagaactctagcgctt	6	8	2	1	rs35324608		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144782494	A	A	144782494	1	1	9	0	1	0	0	0	0	0	0	0	17230	609	21	2		2	UTRN	6	144782494	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	519292	144782494	26332573	8071	16222											
UTRN	7402	broad.mit.edu	37	chr6	144835274	144835274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttagctctcattcctccCaagcattagattcattaaca	3	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144835274	A	A	144835274	1	1	9	0	1	0	0	0	0	0	0	0	17230	609	21	2		2	UTRN	6	144835274	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52780	144835274	26279793	8072	16223											
UTRN	7402	broad.mit.edu	37	chr6	144835864	144835864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttattttgatgaatgccCgtggaagctcaagcagggag	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144835864	A	A	144835864	3	1	9	1	0	0	0	0	1	0	0	0	17230	652	23	1	5294	1	UTRN	6	144835864	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	590	144835864	26279203	8073	16224											
UTRN	7402	broad.mit.edu	37	chr6	145093066	145093066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaacacagaccacctgttGggaccatcctaaaatgaccg	7	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145093066	T	T	145093066	3	4	9	1	0	0	0	0	1	0	0	0	17230	1357	47	2	8749	2	UTRN	6	145093066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	257202	145093066	26022001	8074	16225											
UTRN	7402	broad.mit.edu	37	chr6	145148539	145148539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtgagtattcatagccCacgtgcaggagaggtgttct	13	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145148539	A	A	145148539	1	1	9	0	1	0	0	0	0	0	0	0	17230	609	21	2		2	UTRN	6	145148539	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55473	145148539	25966528	8075	16226											
UTRN	7402	broad.mit.edu	37	chr6	145160398	145160398	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcttgatccagatgcctcCggcccacagttccaccaggc	9	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145160398	A	A	145160398	2	1	9	1	0	0	0	0	0	0	0	1	17230	639	23	1		1	UTRN	6	145160398	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11859	145160398	25954669	8076	16227											
FBXO30	84085	broad.mit.edu	37	chr6	146121297	146121297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccttctttagtgagttctCgtgtcacacacatacatggc	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146121297	A	A	146121297	3	1	9	1	0	0	0	0	1	0	0	0	5797	884	31	3	58	3	FBXO30	6	146121297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	960899	146121297	24993770	8077	16228											
FBXO30	84085	broad.mit.edu	37	chr6	146121336	146121336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagggattgcttcctccCgtttctcgacaacattgtaa	8	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146121336	A	A	146121336	3	1	9	1	0	0	0	0	1	0	0	0	5797	652	23	1	97	1	FBXO30	6	146121336	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	146121336	24993731	8078	16229											
SHPRH	257218	broad.mit.edu	37	chr6	146234631	146234631	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacctgttttcctagctgtcGagcacagattgggcaaggtt	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146234631	T	T	146234631	2	4	9	1	0	0	0	0	0	0	0	1	14404	1066	37	3		3	SHPRH	6	146234631	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	113295	146234631	24880436	8079	16230											
SHPRH	257218	broad.mit.edu	37	chr6	146234668	146234668	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctggattaacacctccCgatgttttatcttgagacta	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146234668	A	A	146234668	2	1	9	1	0	0	0	0	0	0	0	1	14404	639	23	1		1	SHPRH	6	146234668	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	146234668	24880399	8080	16231											
SHPRH	257218	broad.mit.edu	37	chr6	146240515	146240515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgatatgaagaacaggcGgattaggctttggctcccta	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146240515	T	T	146240515	3	4	9	1	0	0	0	0	1	0	0	0	14404	1116	39	1	983	1	SHPRH	6	146240515	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5847	146240515	24874552	8081	16232											
SHPRH	257218	broad.mit.edu	37	chr6	146244842	146244842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggttatttcatttcgcactCgctgaactagctcctcatca	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146244842	A	A	146244842	3	1	9	1	0	0	0	0	1	0	0	0	14404	884	31	3	1638	3	SHPRH	6	146244842	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4327	146244842	24870225	8082	16233											
SHPRH	257218	broad.mit.edu	37	chr6	146245925	146245925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggatataaagcttgctGggcttcagcaacttctgtat	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146245925	T	T	146245925	3	4	9	1	0	0	0	0	1	0	0	0	14404	1357	47	2	1772	2	SHPRH	6	146245925	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1083	146245925	24869142	8083	16234											
SHPRH	257218	broad.mit.edu	37	chr6	146245969	146245969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttgctcatgtagtgctctCgcagctgtttggcctgtgtt	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146245969	A	A	146245969	3	1	9	1	0	0	0	0	1	0	0	0	14404	884	31	3	1816	3	SHPRH	6	146245969	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	146245969	24869098	8084	16235											
GRM1	2911	broad.mit.edu	37	chr6	146350660	146350660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcctcaccaccatggtcGggctccttttgttttttttc	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146350660	T	T	146350660	3	4	9	1	0	0	0	0	1	0	0	0	6862	1116	39	1	9	1	GRM1	6	146350660	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	104691	146350660	24764407	8085	16236											
GRM1	2911	broad.mit.edu	37	chr6	146719915	146719915	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcacaggctgtgagccCattcctgtgcgctatcttga	9	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146719915	A	A	146719915	2	1	9	1	0	0	0	0	0	0	0	1	6862	581	21	2		2	GRM1	6	146719915	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	369255	146719915	24395152	8086	16237											
GRM1	2911	broad.mit.edu	37	chr6	146720009	146720009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttaccttgtttgtcaccCtaatctttgtactgtaccgg	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146720009	A	A	146720009	3	1	9	1	0	0	0	0	1	0	0	0	6862	680	24	2	1860	2	GRM1	6	146720009	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	146720009	24395058	8087	16238											
GRM1	2911	broad.mit.edu	37	chr6	146755256	146755256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccgattcgctttagccCgcctggtagcccttccatgg	10	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146755256	A	A	146755256	3	1	9	1	0	0	0	0	1	0	0	0	6862	652	23	1	3004	1	GRM1	6	146755256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35247	146755256	24359811	8088	16239											
GRM1	2911	broad.mit.edu	37	chr6	146755626	146755626	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagctggtctccccgccCgcggacgacgacgacgacag	15	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146755626	A	A	146755626	2	1	9	1	0	0	0	0	0	0	0	1	6862	639	23	1		1	GRM1	6	146755626	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	370	146755626	24359441	8089	16240											
STXBP5	134957	broad.mit.edu	37	chr6	147599293	147599293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggcaccttgactatatGgaatgtaaggtcccctgcta	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147599293	T	T	147599293	3	4	9	1	0	0	0	0	1	0	0	0	15474	1357	47	2	821	2	STXBP5	6	147599293	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	843667	147599293	23515774	8090	16241											
STXBP5	134957	broad.mit.edu	37	chr6	147680250	147680250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactcctttagccgatcacGgagttcaagtgtaacaagca	8	10	2	0	rs144076925		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147680250	T	T	147680250	3	4	9	1	0	0	0	0	1	0	0	0	15474	1116	39	1	2426	1	STXBP5	6	147680250	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80957	147680250	23434817	8091	16242											
STXBP5	134957	broad.mit.edu	37	chr6	147684611	147684611	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggagaaattgaaaaaaCggcggcctgtctcagtatcc	10	8	1	2	rs143796366		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147684611	T	T	147684611	3	4	9	1	0	0	0	0	1	0	0	0	15474	527	19	4	2780	4	STXBP5	6	147684611	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4361	147684611	23430456	8092	16243											
STXBP5	134957	broad.mit.edu	37	chr6	147685161	147685161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtttaagacctctgttGgatgtgtattacttgcccct	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147685161	T	T	147685161	3	4	9	1	0	0	0	0	1	0	0	0	15474	1339	47	2	3038	2	STXBP5	6	147685161	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	550	147685161	23429906	8093	16244											
SASH1	23328	broad.mit.edu	37	chr6	148711264	148711264	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctttgtttgtccacccCttcaggacggttcactggga	10	14	2	0	rs35202537		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148711264	A	A	148711264	1	1	9	0	1	0	0	0	0	0	0	0	13960	696	24	2		2	SASH1	6	148711264	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1026103	148711264	22403803	8094	16245											
SASH1	23328	broad.mit.edu	37	chr6	148840795	148840795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctcctgagaaacctccCgaagatgactcagactctct	8	14	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148840795	A	A	148840795	2	1	9	1	0	0	0	0	0	0	0	1	13960	639	23	1		1	SASH1	6	148840795	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	129531	148840795	22274272	8095	16246											
SASH1	23328	broad.mit.edu	37	chr6	148855984	148855984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagttaaatatcagggaccCggaacacagagctgttctct	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148855984	A	A	148855984	3	1	9	1	0	0	0	0	1	0	0	0	13960	652	23	1	2104	1	SASH1	6	148855984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15189	148855984	22259083	8096	16247											
TAB2	23118	broad.mit.edu	37	chr6	149718747	149718747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtgttgcagctcttttGgtacaccagaaggccagaat	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149718747	T	T	149718747	3	4	9	1	0	0	0	0	1	0	0	0	15615	1339	47	2	1621	2	TAB2	6	149718747	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	862763	149718747	21396320	8097	16248											
PPIL4	85313	broad.mit.edu	37	chr6	149855898	149855898	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggatcatctaaaatcacCgtatgatttatccttacaaa	4	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149855898	A	A	149855898	2	1	9	1	0	0	0	0	0	0	0	1	12430	639	23	1		1	PPIL4	6	149855898	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	137151	149855898	21259169	8098	16249											
C6orf72	116254	broad.mit.edu	37	chr6	149901016	149901016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatattttagttaagaaccGgggagtactcagacattcaa	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149901016	T	T	149901016	3	4	9	1	0	0	0	0	1	0	0	0	2395	1116	39	1	494	1	C6orf72	6	149901016	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45118	149901016	21214051	8099	16250											
LATS1	9113	broad.mit.edu	37	chr6	150004505	150004505	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctaggcttactgattgactCgtatggaggaacagatgggt	14	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150004505	A	A	150004505	4	1	9	1	0	0	0	0	0	1	0	0	8718	893	31	3	1692	3	LATS1	6	150004505	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103489	150004505	21110562	8100	16251											
LATS1	9113	broad.mit.edu	37	chr6	150022976	150022976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaacttctgaagtactcCgagaagaatttgtttcattt	7	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150022976	A	A	150022976	3	1	9	1	0	0	0	0	1	0	0	0	8718	652	23	1	3133	1	LATS1	6	150022976	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18471	150022976	21092091	8101	16252											
LATS1	9113	broad.mit.edu	37	chr6	150023159	150023159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaattcctaagggattccCgaatttcttgtaacatttgc	6	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150023159	A	A	150023159	3	1	9	1	0	0	0	0	1	0	0	0	8718	652	23	1	3316	1	LATS1	6	150023159	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	183	150023159	21091908	8102	16253											
NUP43	348995	broad.mit.edu	37	chr6	150059964	150059964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgagtcccctttttttcCcaagaaaatcttaaatcaca	3	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150059964	A	A	150059964	1	1	9	0	1	0	0	0	0	0	0	0	10860	638	22	2		2	NUP43	6	150059964	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36805	150059964	21055103	8103	16254											
NUP43	348995	broad.mit.edu	37	chr6	150067629	150067629	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacttcgcataaatttcctcCatgccgaaagcggccgcagc	8	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150067629	G	G	150067629	3	3	9	1	0	0	0	0	1	0	0	0	10860	594	21	4	1171	4	NUP43	6	150067629	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7665	150067629	21047438	8104	16255											
PCMT1	5110	broad.mit.edu	37	chr6	150111159	150111159	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctcttgatgtaggatctGgaagtggaatccttactgca	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150111159	T	T	150111159	4	4	9	1	0	0	0	0	0	1	0	0	11679	1349	47	2	450	2	PCMT1	6	150111159	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43530	150111159	21003908	8105	16256											
RAET1E	135250	broad.mit.edu	37	chr6	150210739	150210739	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacgttgacaaaacatctCgacttgcagagtggaaggat	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150210739	A	A	150210739	4	1	9	1	0	0	0	0	0	1	0	0	13107	893	31	3	432	3	RAET1E	6	150210739	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99580	150210739	20904328	8106	16257											
RAET1G	353091	broad.mit.edu	37	chr6	150240693	150240693	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatctgaaacttacccttGggtatgtaattctccagctg	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150240693	T	T	150240693	2	4	9	1	0	0	0	0	0	0	0	1	13108	1335	47	2		2	RAET1G	6	150240693	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29954	150240693	20874374	8107	16258											
ULBP1	80329	broad.mit.edu	37	chr6	150290529	150290529	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggataaatggaagctgtctCgagttcagatcttatcagct	11	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150290529	A	A	150290529	1	1	9	0	1	0	0	0	0	0	0	0	17098	899	31	3		3	ULBP1	6	150290529	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49836	150290529	20824538	8108	16259											
PLEKHG1	57480	broad.mit.edu	37	chr6	151054844	151054844	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgatagtgaccgaccCgtcagcttcggttccacatc	8	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151054844	A	A	151054844	2	1	9	1	0	0	0	0	0	0	0	1	12163	639	23	1		1	PLEKHG1	6	151054844	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	764315	151054844	20060223	8109	16260											
PLEKHG1	57480	broad.mit.edu	37	chr6	151161418	151161418	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcagccttatcacaggtccCagtcatcttcctccgtcttg	6	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151161418	G	G	151161418	3	3	9	1	0	0	0	0	1	0	0	0	12163	595	21	4	3602	4	PLEKHG1	6	151161418	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106574	151161418	19953649	8110	16261											
MTHFD1L	25902	broad.mit.edu	37	chr6	151247378	151247378	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagccaaagtacgtttgtcCgtgctagaaaggttaaagga	11	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151247378	A	A	151247378	2	1	9	1	0	0	0	0	0	0	0	1	10022	639	23	1		1	MTHFD1L	6	151247378	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85960	151247378	19867689	8111	16262											
MTHFD1L	25902	broad.mit.edu	37	chr6	151277227	151277227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggtggtgctttcttccCgggtgtggctctgttcttac	14	9	3	0	rs146605553	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151277227	A	A	151277227	1	1	9	0	1	0	0	0	0	0	0	0	10022	667	23	1		1	MTHFD1L	6	151277227	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29849	151277227	19837840	8112	16263											
AKAP12	9590	broad.mit.edu	37	chr6	151670547	151670547	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtagacacagaagaagacGgaaaggcagaggttgcctcc	13	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151670547	T	T	151670547	4	4	9	1	0	0	0	0	0	1	0	0	448	1117	39	1	1060	1	AKAP12	6	151670547	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	393320	151670547	19444520	8113	16264											
AKAP12	9590	broad.mit.edu	37	chr6	151671920	151671920	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccactccagacactgaaccCggtaaagaagaatcctgggt	9	12	0	4	rs140093591	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151671920	G	G	151671920	2	3	9	1	0	0	0	0	0	0	0	1	448	639	23	4		4	AKAP12	6	151671920	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1373	151671920	19443147	8114	16265											
AKAP12	9590	broad.mit.edu	37	chr6	151672057	151672057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagatgactctgatgtccCggccgtggtccctctgtctg	12	13	3	3	rs147011891		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151672057	A	A	151672057	3	1	9	1	0	0	0	0	1	0	0	0	448	652	23	1	2570	1	AKAP12	6	151672057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	137	151672057	19443010	8115	16266											
AKAP12	9590	broad.mit.edu	37	chr6	151672142	151672142	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaagcgcagagcagccCgagcagaaggcagccactga	12	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151672142	A	A	151672142	2	1	9	1	0	0	0	0	0	0	0	1	448	639	23	1		1	AKAP12	6	151672142	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85	151672142	19442925	8116	16267											
ZBTB2	57621	broad.mit.edu	37	chr6	151687973	151687973	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagtgtacatcaagtgtaaGagatagctgaagatgtcggg	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151687973	T	T	151687973	2	4	9	1	0	0	0	0	0	0	0	1	17654	929	33	3		3	ZBTB2	6	151687973	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15831	151687973	19427094	8117	16268											
RMND1	55005	broad.mit.edu	37	chr6	151766622	151766622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaacagatttggtttgtGggtcactctcctgtgagtac	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151766622	T	T	151766622	3	4	9	1	0	0	0	0	1	0	0	0	13507	1348	47	2	1068	2	RMND1	6	151766622	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78649	151766622	19348445	8118	16269											
SYNE1	23345	broad.mit.edu	37	chr6	152443507	152443507	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctcttgttggtagtttGggattgcttatgacccgatc	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152443507	T	T	152443507	1	4	9	0	1	0	0	0	0	0	0	0	15564	1363	47	2		2	SYNE1	6	152443507	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	676885	152443507	18671560	8119	16270											
SYNE1	23345	broad.mit.edu	37	chr6	152462347	152462347	+	Missense_Mutation	SNP	G	T	T													tacgcactcaccagccgtttGggtttcggtactatgcaggt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152462347	T	T	152462347	3	4	9	1	0	0	0	0	1	0	0	0	15564	1357	47	2	1188	2	SYNE1	6	152462347	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18840	152462347	18652720	8120	16271	103	2									
SYNE1	23345	broad.mit.edu	37	chr6	152462354	152462354	+	Silent	SNP	G	T	T													tcaccagccgtttgggtttcGgtactatgcaggttaacaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152462354	T	T	152462354	2	4	9	1	0	0	0	0	0	0	0	1	15564	1103	39	1		1	SYNE1	6	152462354	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	152462354	18652713	8121	16272	103	2									
SYNE1	23345	broad.mit.edu	37	chr6	152497506	152497506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatactgcccacacgtgccCtattgactcaggtcctcttt	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152497506	A	A	152497506	1	1	9	0	1	0	0	0	0	0	0	0	15564	696	24	2		2	SYNE1	6	152497506	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35152	152497506	18617561	8122	16273											
SYNE1	23345	broad.mit.edu	37	chr6	152539454	152539454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtggctagggtcctgccCttgtagtatttcttcagctt	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152539454	A	A	152539454	3	1	9	1	0	0	0	0	1	0	0	0	15564	681	24	2	4441	2	SYNE1	6	152539454	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41948	152539454	18575613	8123	16274											
SYNE1	23345	broad.mit.edu	37	chr6	152541948	152541948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtctaagaagggcatgtGgggaaaacaaggtagctcct	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152541948	T	T	152541948	1	4	9	0	1	0	0	0	0	0	0	0	15564	1363	47	2		2	SYNE1	6	152541948	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2494	152541948	18573119	8124	16275											
SYNE1	23345	broad.mit.edu	37	chr6	152542605	152542605	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtaagagtttctgtcacGggtgggtgacactcttttaa	12	6	3	2	rs141170182	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152542605	T	T	152542605	2	4	9	1	0	0	0	0	0	0	0	1	15564	1103	39	1		1	SYNE1	6	152542605	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	657	152542605	18572462	8125	16276											
SYNE1	23345	broad.mit.edu	37	chr6	152639205	152639205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatttggatttctggcccGgaacacatacctgattgagc	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152639205	T	T	152639205	1	4	9	0	1	0	0	0	0	0	0	0	15564	1131	39	1		1	SYNE1	6	152639205	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	96600	152639205	18475862	8126	16277											
SYNE1	23345	broad.mit.edu	37	chr6	152650919	152650919	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagctctgagagctcagcGaggctgtgttctaaatccgc	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152650919	T	T	152650919	2	4	9	1	0	0	0	0	0	0	0	1	15564	1045	37	3		3	SYNE1	6	152650919	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11714	152650919	18464148	8127	16278											
SYNE1	23345	broad.mit.edu	37	chr6	152679540	152679540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgttgtctcatgagtgtGggcatcaccttcaagaactg	10	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152679540	T	T	152679540	3	4	9	1	0	0	0	0	1	0	0	0	15564	1348	47	2	16214	2	SYNE1	6	152679540	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28621	152679540	18435527	8128	16279											
SYNE1	23345	broad.mit.edu	37	chr6	152680506	152680506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatcctggagttctagctGggtgacatagtgttctgtca	12	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152680506	T	T	152680506	3	4	9	1	0	0	0	0	1	0	0	0	15564	1357	47	2	16407	2	SYNE1	6	152680506	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	966	152680506	18434561	8129	16280											
SYNE1	23345	broad.mit.edu	37	chr6	152688292	152688292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccaggtggatggagacGggaaattttgagaaaaacaa	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152688292	T	T	152688292	1	4	9	0	1	0	0	0	0	0	0	0	15564	1131	39	1		1	SYNE1	6	152688292	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7786	152688292	18426775	8130	16281											
SYNE1	23345	broad.mit.edu	37	chr6	152688399	152688399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacttttgtcggatgtcGggtggcagtatgaatccagc	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152688399	T	T	152688399	3	4	9	1	0	0	0	0	1	0	0	0	15564	1116	39	1	16880	1	SYNE1	6	152688399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107	152688399	18426668	8131	16282											
SYNE1	23345	broad.mit.edu	37	chr6	152702214	152702214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggttaactgctgagccCaggttttcagaagggcactg	15	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152702214	A	A	152702214	3	1	9	1	0	0	0	0	1	0	0	0	15564	595	21	2	17894	2	SYNE1	6	152702214	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13815	152702214	18412853	8132	16283											
SYNE1	23345	broad.mit.edu	37	chr6	152708320	152708320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggacttcgcaattagacGgtgaagggctctcgtgtgat	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152708320	T	T	152708320	3	4	9	1	0	0	0	0	1	0	0	0	15564	1116	39	1	18464	1	SYNE1	6	152708320	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6106	152708320	18406747	8133	16284											
SYNE1	23345	broad.mit.edu	37	chr6	152725361	152725361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttacctgaaggtctggcGgtgtttctagatttttagtt	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152725361	T	T	152725361	3	4	9	1	0	0	0	0	1	0	0	0	15564	1116	39	1	20058	1	SYNE1	6	152725361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17041	152725361	18389706	8134	16285											
SYNE1	23345	broad.mit.edu	37	chr6	152737674	152737674	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcactctgcttggttccCagaaggttctggatcctctc	9	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152737674	A	A	152737674	2	1	9	1	0	0	0	0	0	0	0	1	15564	581	21	2		2	SYNE1	6	152737674	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12313	152737674	18377393	8135	16286											
SYNE1	23345	broad.mit.edu	37	chr6	152749323	152749323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtagtgcagcaactcaaGgaaaagtgctgctcacctct	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152749323	T	T	152749323	1	4	9	0	1	0	0	0	0	0	0	0	15564	1015	35	2		2	SYNE1	6	152749323	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11649	152749323	18365744	8136	16287											
SYNE1	23345	broad.mit.edu	37	chr6	152751709	152751709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctctcgaagctcttcccCgtatcttcttatttgtgtca	6	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152751709	A	A	152751709	3	1	9	1	0	0	0	0	1	0	0	0	15564	652	23	1	22317	1	SYNE1	6	152751709	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2386	152751709	18363358	8137	16288											
SYNE1	23345	broad.mit.edu	37	chr6	152757223	152757223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactgcaatactttctgtcCgtttagaaaactcctagaaa	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152757223	A	A	152757223	3	1	9	1	0	0	0	0	1	0	0	0	15564	652	23	1	22759	1	SYNE1	6	152757223	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5514	152757223	18357844	8138	16289											
SYNE1	23345	broad.mit.edu	37	chr6	152804180	152804180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctctccagaccacagtaGggctgttatgctgcaaggtt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152804180	T	T	152804180	1	4	9	0	1	0	0	0	0	0	0	0	15564	1015	35	2		2	SYNE1	6	152804180	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46957	152804180	18310887	8139	16290											
FBXO5	26271	broad.mit.edu	37	chr6	153292464	153292464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcgtttgcaggttgccCgttgtaaatagcaatcatat	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153292464	A	A	153292464	3	1	9	1	0	0	0	0	1	0	0	0	5815	652	23	1	169	1	FBXO5	6	153292464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	488284	153292464	17822603	8140	16291											
RGS17	26575	broad.mit.edu	37	chr6	153344537	153344537	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaggaacctctatgttctCtaagtgctttgaagccctct	7	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153344537	A	A	153344537	1	1	9	0	1	0	0	0	0	0	0	0	13408	928	32	3		3	RGS17	6	153344537	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52073	153344537	17770530	8141	16292											
RGS17	26575	broad.mit.edu	37	chr6	153347642	153347642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtgtgtgtgggtcttccCgcattttcccctctttcttc	9	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153347642	A	A	153347642	2	1	9	1	0	0	0	0	0	0	0	1	13408	639	23	1		1	RGS17	6	153347642	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3105	153347642	17767425	8142	16293											
OPRM1	4988	broad.mit.edu	37	chr6	154412196	154412196	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccagtgctcatcattacCgtgtgctatggactgatgat	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154412196	A	A	154412196	2	1	9	1	0	0	0	0	0	0	0	1	10981	639	23	1		1	OPRM1	6	154412196	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1064554	154412196	16702871	8143	16294											
IPCEF1	26034	broad.mit.edu	37	chr6	154481051	154481051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaggggcaggcgaagccCgctgctgctgatagatgtcc	14	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154481051	A	A	154481051	3	1	9	1	0	0	0	0	1	0	0	0	7861	652	23	1	91	1	IPCEF1	6	154481051	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68855	154481051	16634016	8144	16295											
IPCEF1	26034	broad.mit.edu	37	chr6	154489078	154489078	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgtgctattcaatgttcGgattttgtggagtttctcgt	10	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154489078	T	T	154489078	2	4	9	1	0	0	0	0	0	0	0	1	7861	1124	39	1		1	IPCEF1	6	154489078	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8027	154489078	16625989	8145	16296											
IPCEF1	26034	broad.mit.edu	37	chr6	154489119	154489119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatagatggatttttacacCgcttaacaaaggattttctc	6	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154489119	A	A	154489119	3	1	9	1	0	0	0	0	1	0	0	0	7861	652	23	1	284	1	IPCEF1	6	154489119	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	154489119	16625948	8146	16297											
CNKSR3	154043	broad.mit.edu	37	chr6	154743662	154743662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaagaggtggcttccacCgtaggtttttcaggggagca	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154743662	A	A	154743662	3	1	9	1	0	0	0	0	1	0	0	0	3640	652	23	1	764	1	CNKSR3	6	154743662	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	254543	154743662	16371405	8147	16298											
RBM16	22828	broad.mit.edu	37	chr6	155095174	155095174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcgaaagcgaaaatgaccCaaattactaaggcagccatc	7	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155095174	A	A	155095174	3	1	9	1	0	0	0	0	1	0	0	0	13226	595	21	2	88	2	RBM16	6	155095174	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	351512	155095174	16019893	8148	16299											
RBM16	22828	broad.mit.edu	37	chr6	155131222	155131222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaagcgatcacgctccCgctcaagagaaagaaagagg	11	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155131222	A	A	155131222	3	1	9	1	0	0	0	0	1	0	0	0	13226	652	23	1	1346	1	RBM16	6	155131222	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36048	155131222	15983845	8149	16300											
RBM16	22828	broad.mit.edu	37	chr6	155148369	155148369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgattccaccagtagtacCaacatgtaagttttctactt	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155148369	A	A	155148369	3	1	9	1	0	0	0	0	1	0	0	0	13226	594	21	2	2205	2	RBM16	6	155148369	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17147	155148369	15966698	8150	16301											
RBM16	22828	broad.mit.edu	37	chr6	155152133	155152133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagccttgttataccaggcGgttctgttgccagcaatctt	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155152133	T	T	155152133	3	4	9	1	0	0	0	0	1	0	0	0	13226	1116	39	1	2292	1	RBM16	6	155152133	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3764	155152133	15962934	8151	16302											
RBM16	22828	broad.mit.edu	37	chr6	155153497	155153497	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgttagacattcgtccGggactaataccacaggcacc	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155153497	T	T	155153497	2	4	9	1	0	0	0	0	0	0	0	1	13226	1103	39	1		1	RBM16	6	155153497	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1364	155153497	15961570	8152	16303											
RBM16	22828	broad.mit.edu	37	chr6	155153562	155153562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggaattccaccccaacGgggaatcccacccccatcgg	9	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155153562	T	T	155153562	3	4	9	1	0	0	0	0	1	0	0	0	13226	1116	39	1	2927	1	RBM16	6	155153562	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65	155153562	15961505	8153	16304											
TIAM2	26230	broad.mit.edu	37	chr6	155451326	155451326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctttctgatgaatacatGggcacgcatgccagcctgag	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155451326	T	T	155451326	3	4	9	1	0	0	0	0	1	0	0	0	16014	1348	47	2	971	2	TIAM2	6	155451326	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	297764	155451326	15663741	8154	16305											
TIAM2	26230	broad.mit.edu	37	chr6	155561769	155561769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccgaggtctctggccCgccacctgtctgatgcagac	10	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155561769	A	A	155561769	3	1	9	1	0	0	0	0	1	0	0	0	16014	652	23	1	3324	1	TIAM2	6	155561769	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110443	155561769	15553298	8155	16306											
TIAM2	26230	broad.mit.edu	37	chr6	155566835	155566835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtggattctgtgctaacCatatcaaagtacagaaggtt	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155566835	A	A	155566835	3	1	9	1	0	0	0	0	1	0	0	0	16014	594	21	2	3684	2	TIAM2	6	155566835	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5066	155566835	15548232	8156	16307											
ARID1B	57492	broad.mit.edu	37	chr6	157488113	157488113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtagaaatgactgccaGggcaaaccactgctaatgtg	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157488113	T	T	157488113	1	4	9	0	1	0	0	0	0	0	0	0	916	1015	35	2		2	ARID1B	6	157488113	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1921278	157488113	13626954	8157	16308											
ARID1B	57492	broad.mit.edu	37	chr6	157511228	157511228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagtgattcatccttccCgaaacggaactccatgactc	8	12	1	3	rs150196933		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157511228	A	A	157511228	3	1	9	1	0	0	0	0	1	0	0	0	916	652	23	1	3804	1	ARID1B	6	157511228	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23115	157511228	13603839	8158	16309											
ARID1B	57492	broad.mit.edu	37	chr6	157522508	157522508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccacatcccaggtcaccGggccaccaccccaaccaccc	5	24	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157522508	T	T	157522508	3	4	9	1	0	0	0	0	1	0	0	0	916	1116	39	1	4850	1	ARID1B	6	157522508	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11280	157522508	13592559	8159	16310											
ARID1B	57492	broad.mit.edu	37	chr6	157527237	157527237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatctttaccctcctcGgtcatatctgatgtcatgac	7	12	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157527237	T	T	157527237	1	4	9	0	1	0	0	0	0	0	0	0	916	1131	39	1		1	ARID1B	6	157527237	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4729	157527237	13587830	8160	16311											
ARID1B	57492	broad.mit.edu	37	chr6	157527756	157527756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcgggggtgacaccacCgagcacattcagactcactt	11	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157527756	A	A	157527756	2	1	9	1	0	0	0	0	0	0	0	1	916	639	23	1		1	ARID1B	6	157527756	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	519	157527756	13587311	8161	16312											
ARID1B	57492	broad.mit.edu	37	chr6	157528132	157528132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgtgtccaatattgtcCgtagcttgtcattcgtgcct	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157528132	A	A	157528132	3	1	9	1	0	0	0	0	1	0	0	0	916	652	23	1	5935	1	ARID1B	6	157528132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	376	157528132	13586935	8162	16313											
ARID1B	57492	broad.mit.edu	37	chr6	157528451	157528451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcactggatggtgtgccCgtctgcagaggcacaagatc	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157528451	A	A	157528451	3	1	9	1	0	0	0	0	1	0	0	0	916	652	23	1	6254	1	ARID1B	6	157528451	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	319	157528451	13586616	8163	16314											
ARID1B	57492	broad.mit.edu	37	chr6	157528496	157528496	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaactgtgggacccaactCggtcctgtcgcctcagagac	10	15	1	1	rs149978361		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157528496	A	A	157528496	4	1	9	1	0	0	0	0	0	1	0	0	916	893	31	3	6299	3	ARID1B	6	157528496	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	157528496	13586571	8164	16315											
ARID1B	57492	broad.mit.edu	37	chr6	157528658	157528658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgcaaaaacccagtctgtcGagaaatgtccatggcgcttt	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157528658	T	T	157528658	3	4	9	1	0	0	0	0	1	0	0	0	916	1058	37	3	6461	3	ARID1B	6	157528658	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	162	157528658	13586409	8165	16316											
C6orf35	729515	broad.mit.edu	37	chr6	157744397	157744397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagagcaagccagggtccGgggttaactcaccccgacgc	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157744397	T	T	157744397	1	4	9	0	1	0	0	0	0	0	0	0	2386	1131	39	1		1	C6orf35	6	157744397	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	215739	157744397	13370670	8166	16317											
C6orf35	729515	broad.mit.edu	37	chr6	157744507	157744507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccagaggccggctgccCagttgcagcgcccgctgtct	13	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157744507	A	A	157744507	3	1	9	1	0	0	0	0	1	0	0	0	2386	594	21	2	416	2	C6orf35	6	157744507	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110	157744507	13370560	8167	16318											
ZDHHC14	79683	broad.mit.edu	37	chr6	158053895	158053895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaggattcctaaatgccCttaaggacagtcctgcaaga	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158053895	A	A	158053895	3	1	9	1	0	0	0	0	1	0	0	0	17730	681	24	2	751	2	ZDHHC14	6	158053895	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	309388	158053895	13061172	8168	16319											
SYNJ2	8871	broad.mit.edu	37	chr6	158483123	158483123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctagagaaattggagaccCtcttgaggccacagttaaag	11	8	1	3	rs61746418		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158483123	A	A	158483123	3	1	9	1	0	0	0	0	1	0	0	0	15572	681	24	2	1084	2	SYNJ2	6	158483123	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	429228	158483123	12631944	8169	16320											
SYNJ2	8871	broad.mit.edu	37	chr6	158505218	158505218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtacaaaggtagcctgaccCttcttttctcaggagcctca	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158505218	A	A	158505218	1	1	9	0	1	0	0	0	0	0	0	0	15572	696	24	2		2	SYNJ2	6	158505218	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22095	158505218	12609849	8170	16321											
SYNJ2	8871	broad.mit.edu	37	chr6	158509848	158509848	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcccaagggttttgccccCgggatagtgtgggatctctc	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158509848	A	A	158509848	1	1	9	0	1	0	0	0	0	0	0	0	15572	667	23	1		1	SYNJ2	6	158509848	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4630	158509848	12605219	8171	16322											
SYNJ2	8871	broad.mit.edu	37	chr6	158515036	158515036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagacacatctggatcttcCgtttgatctcagtgttctag	9	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158515036	A	A	158515036	1	1	9	0	1	0	0	0	0	0	0	0	15572	667	23	1		1	SYNJ2	6	158515036	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5188	158515036	12600031	8172	16323											
TULP4	56995	broad.mit.edu	37	chr6	158735284	158735284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggataaatttcaacctccGgggccacaatagcgaggtga	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158735284	T	T	158735284	3	4	9	1	0	0	0	0	1	0	0	0	16902	1116	39	1	238	1	TULP4	6	158735284	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	220248	158735284	12379783	8173	16324											
TULP4	56995	broad.mit.edu	37	chr6	158850872	158850872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaaagacactggtcatcCgaaatcaacttggaaagtca	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158850872	A	A	158850872	2	1	9	1	0	0	0	0	0	0	0	1	16902	639	23	1		1	TULP4	6	158850872	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	115588	158850872	12264195	8174	16325											
TULP4	56995	broad.mit.edu	37	chr6	158873218	158873218	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatcaagcctctgctcacCgtcagcttcacctcgggaga	8	15	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158873218	A	A	158873218	2	1	9	1	0	0	0	0	0	0	0	1	16902	639	23	1		1	TULP4	6	158873218	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22346	158873218	12241849	8175	16326											
TULP4	56995	broad.mit.edu	37	chr6	158923028	158923028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactgtccctgcctccccCgccgcaggggcccatgcagc	10	21	0	0	rs146775344		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158923028	A	A	158923028	3	1	9	1	0	0	0	0	1	0	0	0	16902	652	23	1	2383	1	TULP4	6	158923028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49810	158923028	12192039	8176	16327											
TMEM181	57583	broad.mit.edu	37	chr6	159026388	159026388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcgtcactgtgagtacCattcgcctgatggaccgcag	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159026388	A	A	159026388	1	1	9	0	1	0	0	0	0	0	0	0	16223	609	21	2		2	TMEM181	6	159026388	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103360	159026388	12088679	8177	16328											
TMEM181	57583	broad.mit.edu	37	chr6	159044610	159044610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattacatgatccaatgtacCagtatcgagttgataccgga	8	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159044610	A	A	159044610	3	1	9	1	0	0	0	0	1	0	0	0	16223	595	21	2	1378	2	TMEM181	6	159044610	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18222	159044610	12070457	8178	16329											
TMEM181	57583	broad.mit.edu	37	chr6	159046213	159046213	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatagtgcgggcgtgttcCgagctacgtcacatgcctta	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159046213	A	A	159046213	2	1	9	1	0	0	0	0	0	0	0	1	16223	639	23	1		1	TMEM181	6	159046213	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1603	159046213	12068854	8179	16330											
TMEM181	57583	broad.mit.edu	37	chr6	159052283	159052283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactcccttcctttgtccGggacagcatcctgcctgtcc	7	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159052283	T	T	159052283	1	4	9	0	1	0	0	0	0	0	0	0	16223	1131	39	1		1	TMEM181	6	159052283	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6070	159052283	12062784	8180	16331											
EZR	7430	broad.mit.edu	37	chr6	159191727	159191727	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggtgagtgggtgggtGggtgtggcccctgctactct	17	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159191727	T	T	159191727	1	4	9	0	1	0	0	0	0	0	0	0	5378	1363	47	2		2	EZR	6	159191727	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	139444	159191727	11923340	8181	16332											
RSPH3	83861	broad.mit.edu	37	chr6	159398662	159398662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccataaacttcctttcctGggatgaccttctgtcatatg	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159398662	T	T	159398662	3	4	9	1	0	0	0	0	1	0	0	0	13816	1357	47	2	95	2	RSPH3	6	159398662	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	206935	159398662	11716405	8182	16333											
RSPH3	83861	broad.mit.edu	37	chr6	159398721	159398721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatctaaaagcagctccCgtgtctgtgacatgctctgc	8	14	3	1	rs150432556		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159398721	A	A	159398721	3	1	9	1	0	0	0	0	1	0	0	0	13816	652	23	1	154	1	RSPH3	6	159398721	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	159398721	11716346	8183	16334											
RSPH3	83861	broad.mit.edu	37	chr6	159401899	159401899	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacgctgtgcaaatgctcGggcggcgattttttgtgatg	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159401899	T	T	159401899	2	4	9	1	0	0	0	0	0	0	0	1	13816	1124	39	1		1	RSPH3	6	159401899	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3178	159401899	11713168	8184	16335											
TAGAP	117289	broad.mit.edu	37	chr6	159464601	159464601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcacttacataaaagatcGgtatgtttttaaaactcacc	5	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159464601	T	T	159464601	1	4	9	0	1	0	0	0	0	0	0	0	15656	1131	39	1		1	TAGAP	6	159464601	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	62702	159464601	11650466	8185	16336											
FNDC1	84624	broad.mit.edu	37	chr6	159646611	159646611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggggaattggccaggtGggattataagcagatcgcta	16	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159646611	T	T	159646611	3	4	9	1	0	0	0	0	1	0	0	0	6026	1357	47	2	959	2	FNDC1	6	159646611	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	182010	159646611	11468456	8186	16337											
FNDC1	84624	broad.mit.edu	37	chr6	159682279	159682279	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacggacctatcagcccttcGgtctcatttgtcaccgaatc	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159682279	T	T	159682279	2	4	9	1	0	0	0	0	0	0	0	1	6026	1103	39	1		1	FNDC1	6	159682279	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35668	159682279	11432788	8187	16338											
TCP1	6950	broad.mit.edu	37	chr6	160206779	160206779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaaaaagatactggtcCaagtttttaacttcaaatat	6	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160206779	A	A	160206779	1	1	9	0	1	0	0	0	0	0	0	0	15831	609	21	2		2	TCP1	6	160206779	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	524500	160206779	10908288	8188	16339											
PNLDC1	154197	broad.mit.edu	37	chr6	160222182	160222182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtggtatctaaagaccCgtcagagtgttcagcaattt	11	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160222182	A	A	160222182	3	1	9	1	0	0	0	0	1	0	0	0	12243	652	23	1	145	1	PNLDC1	6	160222182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15403	160222182	10892885	8189	16340											
PNLDC1	154197	broad.mit.edu	37	chr6	160225225	160225225	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgcaatcttcgcctccCgggttcaagtgattttcctg	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160225225	G	G	160225225	1	3	9	0	1	0	0	0	0	0	0	0	12243	667	23	4		4	PNLDC1	6	160225225	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3043	160225225	10889842	8190	16341											
MAS1	4142	broad.mit.edu	37	chr6	160328341	160328341	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtttggctacaacacGggcctctatctgctgacggc	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160328341	T	T	160328341	2	4	9	1	0	0	0	0	0	0	0	1	9412	1103	39	1		1	MAS1	6	160328341	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	103116	160328341	10786726	8191	16342											
MAS1	4142	broad.mit.edu	37	chr6	160328837	160328837	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcatttacttctttgtgGgaagcagtaagaagaagaga	10	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160328837	T	T	160328837	4	4	9	1	0	0	0	0	0	1	0	0	9412	1233	43	2	852	2	MAS1	6	160328837	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	496	160328837	10786230	8192	16343											
IGF2R	3482	broad.mit.edu	37	chr6	160485347	160485347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgtctcacactcttcaGggtgtgtggtgtcacatgtc	10	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160485347	T	T	160485347	1	4	9	0	1	0	0	0	0	0	0	0	7646	1015	35	2		2	IGF2R	6	160485347	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	156510	160485347	10629720	8193	16344											
IGF2R	3482	broad.mit.edu	37	chr6	160485396	160485396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgacagcctagggaccCgaaccaaaccttgtttaatg	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160485396	A	A	160485396	1	1	9	0	1	0	0	0	0	0	0	0	7646	667	23	1		1	IGF2R	6	160485396	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	160485396	10629671	8194	16345											
IGF2R	3482	broad.mit.edu	37	chr6	160497067	160497067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatctagatgctcaactgcGggttagtgagccaaggctag	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160497067	T	T	160497067	1	4	9	0	1	0	0	0	0	0	0	0	7646	1131	39	1		1	IGF2R	6	160497067	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11671	160497067	10618000	8195	16346											
IGF2R	3482	broad.mit.edu	37	chr6	160517578	160517578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccctctggtggaggacGggatccccgagttcagtcac	14	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160517578	T	T	160517578	3	4	9	1	0	0	0	0	1	0	0	0	7646	1116	39	1	6941	1	IGF2R	6	160517578	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20511	160517578	10597489	8196	16347											
SLC22A1	6580	broad.mit.edu	37	chr6	160553315	160553315	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggtcaacgcggtgtcGggcgtgctcatggccttctc	15	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160553315	T	T	160553315	2	4	9	1	0	0	0	0	0	0	0	1	14553	1103	39	1		1	SLC22A1	6	160553315	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35737	160553315	10561752	8197	16348											
SLC22A1	6580	broad.mit.edu	37	chr6	160553339	160553339	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcatggccttctcgccCaactacatgtccatgctgct	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160553339	A	A	160553339	2	1	9	1	0	0	0	0	0	0	0	1	14553	581	21	2		2	SLC22A1	6	160553339	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	160553339	10561728	8198	16349											
SLC22A1	6580	broad.mit.edu	37	chr6	160577124	160577124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgaagcccatggtgccCaggactccgaggcccatgag	15	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160577124	A	A	160577124	1	1	9	0	1	0	0	0	0	0	0	0	14553	609	21	2		2	SLC22A1	6	160577124	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23785	160577124	10537943	8199	16350											
LPA	4018	broad.mit.edu	37	chr6	160998187	160998187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcatttgggtagttttctgGggtcctctgatgccagtgtg	14	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160998187	T	T	160998187	3	4	9	1	0	0	0	0	1	0	0	0	8990	1232	43	2	1558	2	LPA	6	160998187	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	421063	160998187	10116880	8200	16351											
LPA	4018	broad.mit.edu	37	chr6	161006096	161006096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcatttggatagtataatGggatcctccgatgccaatgt	10	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161006096	T	T	161006096	3	4	9	1	0	0	0	0	1	0	0	0	8990	1348	47	2	1907	2	LPA	6	161006096	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7909	161006096	10108971	8201	16352											
LPA	4018	broad.mit.edu	37	chr6	161015129	161015129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtagcaatcctggacccCggggctttgctccgttggtg	14	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161015129	A	A	161015129	3	1	9	1	0	0	0	0	1	0	0	0	8990	652	23	1	2704	1	LPA	6	161015129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9033	161015129	10099938	8202	16353											
LPA	4018	broad.mit.edu	37	chr6	161026102	161026102	+	Missense_Mutation	SNP	C	A	A													ttgggtagtatgctggggtcCgactatgcgagtgtggtgtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161026102	A	A	161026102	3	1	9	1	0	0	0	0	1	0	0	0	8990	652	23	1	3289	1	LPA	6	161026102	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10973	161026102	10088965	8203	16354	104	2									
LPA	4018	broad.mit.edu	37	chr6	161026111	161026111	+	Nonsense_Mutation	SNP	G	T	T													atgctggggtccgactatgcGagtgtggtgtcatagatgac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161026111	T	T	161026111	4	4	9	1	0	0	0	0	0	1	0	0	8990	1059	37	3	3298	3	LPA	6	161026111	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	161026111	10088956	8204	16355	104	2									
LPA	4018	broad.mit.edu	37	chr6	161032510	161032510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgacacaagttgagttcGgagaactcagcttgaagcat	10	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161032510	T	T	161032510	1	4	9	0	1	0	0	0	0	0	0	0	8990	1131	39	1		1	LPA	6	161032510	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6399	161032510	10082557	8205	16356											
LPA	4018	broad.mit.edu	37	chr6	161032560	161032560	+	Intron	SNP	C	A	A													cacagaaacttcagttggccCtttattctcttatggtaaag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161032560	A	A	161032560	1	1	9	0	1	0	0	0	0	0	0	0	8990	696	24	2		2	LPA	6	161032560	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	161032560	10082507	8206	16357	105	2									
LPA	4018	broad.mit.edu	37	chr6	161032569	161032569	+	Intron	SNP	C	A	A													ttcagttggccctttattctCttatggtaaagaacaaagac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161032569	A	A	161032569	1	1	9	0	1	0	0	0	0	0	0	0	8990	928	32	3		3	LPA	6	161032569	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	161032569	10082498	8207	16358	105	2									
PLG	5340	broad.mit.edu	37	chr6	161123306	161123306	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatcctgggattgggaccCactttctgggcactgctggc	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161123306	A	A	161123306	1	1	9	0	1	0	0	0	0	0	0	0	12181	609	21	2		2	PLG	6	161123306	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	90737	161123306	9991761	8208	16359											
PLG	5340	broad.mit.edu	37	chr6	161123333	161123333	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcactgctggccagtccCaaaatggaacataaggaagt	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161123333	A	A	161123333	1	1	9	0	1	0	0	0	0	0	0	0	12181	609	21	2		2	PLG	6	161123333	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	161123333	9991734	8209	16360											
PLG	5340	broad.mit.edu	37	chr6	161133913	161133913	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacccagctgaaatgcattTggatgacaatctcagatggg	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161133913	C	C	161133913	1	2	9	0	1	0	0	0	0	0	0	0	12181	1827	63	5		5	PLG	6	161133913	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	10580	161133913	9981154	8210	16361											
MAP3K4	4216	broad.mit.edu	37	chr6	161469336	161469336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaaggtgattacttacGgaaatttggttaaatgattt	9	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161469336	T	T	161469336	1	4	9	0	1	0	0	0	0	0	0	0	9344	1131	39	1		1	MAP3K4	6	161469336	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	335423	161469336	9645731	8211	16362											
MAP3K4	4216	broad.mit.edu	37	chr6	161505488	161505488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaattaggctatgagtaGggacagttttcttctctgtt	10	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161505488	T	T	161505488	1	4	9	0	1	0	0	0	0	0	0	0	9344	1015	35	2		2	MAP3K4	6	161505488	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36152	161505488	9609579	8212	16363											
MAP3K4	4216	broad.mit.edu	37	chr6	161510315	161510315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaataacaactagtaactGggttggtttttatgtcctgt	9	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161510315	T	T	161510315	1	4	9	0	1	0	0	0	0	0	0	0	9344	1363	47	2		2	MAP3K4	6	161510315	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4827	161510315	9604752	8213	16364											
MAP3K4	4216	broad.mit.edu	37	chr6	161512456	161512456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggataagcaatgccattgacCgcgtggaccacatgttcaca	10	11	1	1	rs146198891		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161512456	A	A	161512456	3	1	9	1	0	0	0	0	1	0	0	0	9344	652	23	1	3065	1	MAP3K4	6	161512456	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2141	161512456	9602611	8214	16365											
MAP3K4	4216	broad.mit.edu	37	chr6	161513060	161513060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtatcataaagaagttgttCgtttgatgtctggggagttt	12	3	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161513060	A	A	161513060	3	1	9	1	0	0	0	0	1	0	0	0	9344	884	31	3	3204	3	MAP3K4	6	161513060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	604	161513060	9602007	8215	16366											
MAP3K4	4216	broad.mit.edu	37	chr6	161519315	161519315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcttgtcttagcactcGgagcatgccttccgacgcgc	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161519315	T	T	161519315	3	4	9	1	0	0	0	0	1	0	0	0	9344	1116	39	1	3596	1	MAP3K4	6	161519315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6255	161519315	9595752	8216	16367											
MAP3K4	4216	broad.mit.edu	37	chr6	161532908	161532908	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatctggattaatcaaactGggagattttggatgttcagt	10	5	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161532908	C	C	161532908	2	2	9	1	0	0	0	0	0	0	0	1	9344	1335	47	4		4	MAP3K4	6	161532908	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13593	161532908	9582159	8217	16368											
MAP3K4	4216	broad.mit.edu	37	chr6	161536202	161536202	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaattatgtataaagtGgggatgggacataagccacc	10	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161536202	T	T	161536202	2	4	9	1	0	0	0	0	0	0	0	1	9344	1335	47	2		2	MAP3K4	6	161536202	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3294	161536202	9578865	8218	16369											
AGPAT4	56895	broad.mit.edu	37	chr6	161575274	161575274	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgaacagaagaccatctcGgtgaagtaccacatccagcc	9	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161575274	T	T	161575274	2	4	9	1	0	0	0	0	0	0	0	1	389	1103	39	1		1	AGPAT4	6	161575274	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39072	161575274	9539793	8219	16370											
PACRG	135138	broad.mit.edu	37	chr6	163149356	163149356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggcacaacagccgctccCggtgcaccagcctcactctc	9	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163149356	A	A	163149356	3	1	9	1	0	0	0	0	1	0	0	0	11464	652	23	1	91	1	PACRG	6	163149356	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1574082	163149356	7965711	8220	16371											
PACRG	135138	broad.mit.edu	37	chr6	163235229	163235229	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaagaccaaccaagccCacagcatttcgaaaattcta	5	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163235229	A	A	163235229	2	1	9	1	0	0	0	0	0	0	0	1	11464	581	21	2		2	PACRG	6	163235229	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85873	163235229	7879838	8221	16372											
QKI	9444	broad.mit.edu	37	chr6	163899896	163899896	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggatgtaaaatcatggtcCgaggcaaaggctcaatgagg	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163899896	A	A	163899896	2	1	9	1	0	0	0	0	0	0	0	1	12981	644	23	1		1	QKI	6	163899896	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	664667	163899896	7215171	8222	16373											
C6orf118	168090	broad.mit.edu	37	chr6	165711423	165711423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtttcagaccttgttacGgaagaatctaaacatagatc	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165711423	T	T	165711423	1	4	9	0	1	0	0	0	0	0	0	0	2346	1131	39	1		1	C6orf118	6	165711423	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1811527	165711423	5403644	8223	16374											
C6orf118	168090	broad.mit.edu	37	chr6	165714122	165714122	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagtctcgggggttctgatCcctcccaccagttgctgagc	11	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165714122	A	A	165714122	1	1	9	0	1	0	0	0	0	0	0	0	2346	870	30	3		3	C6orf118	6	165714122	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2699	165714122	5400945	8224	16375											
PDE10A	10846	broad.mit.edu	37	chr6	165806229	165806229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagttgtgataaggaaccCgccgatagttcttcttcaca	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165806229	A	A	165806229	3	1	9	1	0	0	0	0	1	0	0	0	11724	652	23	1	835	1	PDE10A	6	165806229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92107	165806229	5308838	8225	16376											
PDE10A	10846	broad.mit.edu	37	chr6	165844817	165844817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcccaaaataaggcattGggtgacttaacctctattcc	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165844817	T	T	165844817	1	4	9	0	1	0	0	0	0	0	0	0	11724	1363	47	2		2	PDE10A	6	165844817	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38588	165844817	5270250	8226	16377											
PDE10A	10846	broad.mit.edu	37	chr6	165895835	165895835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaggagctgattcatctgGggatagagaaggaagaggga	16	4	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165895835	T	T	165895835	1	4	9	0	1	0	0	0	0	0	0	0	11724	1247	43	2		2	PDE10A	6	165895835	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51018	165895835	5219232	8227	16378											
T	6862	broad.mit.edu	37	chr6	166580131	166580131	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgactttgctgaaggagacGggagccttcatccagtgggc	14	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166580131	T	T	166580131	2	4	9	1	0	0	0	0	0	0	0	1	15607	1103	39	1		1	T	6	166580131	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	684296	166580131	4534936	8228	16379											
RPS6KA2	6196	broad.mit.edu	37	chr6	166864703	166864703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatgagcgtttgcactcGgggggacgccaggagagtct	18	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166864703	T	T	166864703	3	4	9	1	0	0	0	0	1	0	0	0	13762	1116	39	1	1143	1	RPS6KA2	6	166864703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	284572	166864703	4250364	8229	16380											
RPS6KA2	6196	broad.mit.edu	37	chr6	167116244	167116244	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggaagggtcccgacacGgggatcttggcgtccttcaa	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167116244	T	T	167116244	1	4	9	0	1	0	0	0	0	0	0	0	13762	1131	39	1		1	RPS6KA2	6	167116244	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	251541	167116244	3998823	8230	16381											
RPS6KA2	6196	broad.mit.edu	37	chr6	167184357	167184357	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacgcttcttacctctacGgatccagctacctttgtctt	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167184357	T	T	167184357	2	4	9	1	0	0	0	0	0	0	0	1	13762	1131	39	1		1	RPS6KA2	6	167184357	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68113	167184357	3930710	8231	16382											
RNASET2	8635	broad.mit.edu	37	chr6	167343140	167343140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacagactctcagacccCggctctcggcggccccattt	8	18	3	2	rs146590748	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167343140	A	A	167343140	3	1	9	1	0	0	0	0	1	0	0	0	13529	652	23	1	67	1	RNASET2	6	167343140	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158783	167343140	3771927	8232	16383											
FGFR1OP	11116	broad.mit.edu	37	chr6	167438314	167438314	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaagtctggcctcgctctCggatgcaccccccttaaaaa	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167438314	A	A	167438314	4	1	9	1	0	0	0	0	0	1	0	0	5921	893	31	3	885	3	FGFR1OP	6	167438314	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95174	167438314	3676753	8233	16384											
UNC93A	54346	broad.mit.edu	37	chr6	167709628	167709628	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacacatgcagagaaggcGggaaagcgtggcaaagacat	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167709628	T	T	167709628	2	4	9	1	0	0	0	0	0	0	0	1	17122	1103	39	1		1	UNC93A	6	167709628	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	271314	167709628	3405439	8234	16385											
TCP10	6953	broad.mit.edu	37	chr6	167791447	167791447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcacgaagggtcacctttGgaggagctaagtggttagat	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167791447	T	T	167791447	3	4	9	1	0	0	0	0	1	0	0	0	15832	1348	47	2	587	2	TCP10	6	167791447	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81819	167791447	3323620	8235	16386											
MLLT4	4301	broad.mit.edu	37	chr6	168227017	168227017	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctggacccagcaccgccCgtctggaaccagcaccgccc	10	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168227017	A	A	168227017	1	1	9	0	1	0	0	0	0	0	0	0	9722	667	23	1		1	MLLT4	6	168227017	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	435570	168227017	2888050	8236	16387											
MLLT4	4301	broad.mit.edu	37	chr6	168227037	168227037	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctggaaccagcaccgccCgtccacagatccatcaccac	7	19	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168227037	A	A	168227037	1	1	9	0	1	0	0	0	0	0	0	0	9722	667	23	1		1	MLLT4	6	168227037	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	168227037	2888030	8237	16388											
MLLT4	4301	broad.mit.edu	37	chr6	168265353	168265353	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtaatcgaaacgctcgcGgagaaatttcgacctgatat	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168265353	T	T	168265353	2	4	9	1	0	0	0	0	0	0	0	1	9722	1103	39	1		1	MLLT4	6	168265353	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38316	168265353	2849714	8238	16389											
MLLT4	4301	broad.mit.edu	37	chr6	168271188	168271188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcctaaggtaggaaccCtcagtattttatgacggtct	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168271188	A	A	168271188	1	1	9	0	1	0	0	0	0	0	0	0	9722	696	24	2		2	MLLT4	6	168271188	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5835	168271188	2843879	8239	16390											
MLLT4	4301	broad.mit.edu	37	chr6	168276073	168276073	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccggaaaccagctttactCgaaccatttctaatcctgag	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168276073	A	A	168276073	2	1	9	1	0	0	0	0	0	0	0	1	9722	876	31	3		3	MLLT4	6	168276073	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4885	168276073	2838994	8240	16391											
MLLT4	4301	broad.mit.edu	37	chr6	168276110	168276110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtggttatgaaacgacGgaggcagcaaaaattggaaa	14	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168276110	T	T	168276110	3	4	9	1	0	0	0	0	1	0	0	0	9722	1116	39	1	692	1	MLLT4	6	168276110	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	168276110	2838957	8241	16392											
MLLT4	4301	broad.mit.edu	37	chr6	168347571	168347571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgatcaccgttccagcccCaacgtagcaagtaagagtga	10	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168347571	A	A	168347571	2	1	9	1	0	0	0	0	0	0	0	1	9722	581	21	2		2	MLLT4	6	168347571	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71461	168347571	2767496	8242	16393											
FRMD1	79981	broad.mit.edu	37	chr6	168468030	168468030	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctgccctctcccaccCgacactctacacttacttca	5	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168468030	T	T	168468030	1	4	9	0	1	0	0	0	0	0	0	0	6109	667	23	4		4	FRMD1	6	168468030	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	120459	168468030	2647037	8243	16394											
SMOC2	64094	broad.mit.edu	37	chr6	168910697	168910697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaaggaccttcctttccCgttgtgaatttcaacgtgcc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168910697	A	A	168910697	3	1	9	1	0	0	0	0	1	0	0	0	14916	652	23	1	193	1	SMOC2	6	168910697	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	442667	168910697	2204370	8244	16395											
THBS2	7058	broad.mit.edu	37	chr6	169617848	169617848	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagagaagccacaaggacCacaatgaactgaggtgtcta	12	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169617848	A	A	169617848	1	1	9	0	1	0	0	0	0	0	0	0	15977	609	21	2		2	THBS2	6	169617848	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	707151	169617848	1497219	8245	16396											
THBS2	7058	broad.mit.edu	37	chr6	169629676	169629676	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctcctaccttctcatcGgtcacaccgtcattgtcatc	6	16	4	0	rs143333491	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169629676	T	T	169629676	2	4	9	1	0	0	0	0	0	0	0	1	15977	1103	39	1		1	THBS2	6	169629676	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11828	169629676	1485391	8246	16397											
THBS2	7058	broad.mit.edu	37	chr6	169629723	169629723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacaggcatcgccaatccCgtccttgtcaaagtcttcct	6	15	3	0	rs140600818	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169629723	A	A	169629723	3	1	9	1	0	0	0	0	1	0	0	0	15977	652	23	1	1351	1	THBS2	6	169629723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	169629723	1485344	8247	16398											
THBS2	7058	broad.mit.edu	37	chr6	169632298	169632298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgggctcacacacctacGgggagaagggctgcggggtt	16	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169632298	T	T	169632298	1	4	9	0	1	0	0	0	0	0	0	0	15977	1131	39	1		1	THBS2	6	169632298	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2575	169632298	1482769	8248	16399											
THBS2	7058	broad.mit.edu	37	chr6	169632794	169632794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcttccaggccgacccCgacgggctggttccctctgt	13	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169632794	A	A	169632794	3	1	9	1	0	0	0	0	1	0	0	0	15977	652	23	1	1665	1	THBS2	6	169632794	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	496	169632794	1482273	8249	16400											
THBS2	7058	broad.mit.edu	37	chr6	169637803	169637803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtgacgtcacaggacCggcctctctgctgggtccca	13	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169637803	A	A	169637803	3	1	9	1	0	0	0	0	1	0	0	0	15977	652	23	1	2361	1	THBS2	6	169637803	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5009	169637803	1477264	8250	16401											
THBS2	7058	broad.mit.edu	37	chr6	169642135	169642135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacagagggaggatgaccCgccctggctcccggagcggc	17	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169642135	A	A	169642135	1	1	9	0	1	0	0	0	0	0	0	0	15977	667	23	1		1	THBS2	6	169642135	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4332	169642135	1472932	8251	16402											
WDR27	253769	broad.mit.edu	37	chr6	170068297	170068297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgctattaaaataaagcCcaaattattcctctgttcaa	4	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170068297	A	A	170068297	1	1	9	0	1	0	0	0	0	0	0	0	17411	638	22	2		2	WDR27	6	170068297	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	426162	170068297	1046770	8252	16403											
DLL1	28514	broad.mit.edu	37	chr6	170592124	170592124	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcggatatgacgtacacCgactggtacttggtgtcttt	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170592124	A	A	170592124	2	1	9	1	0	0	0	0	0	0	0	1	4606	639	23	1		1	DLL1	6	170592124	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	523827	170592124	522943	8253	16404											
FAM120B	84498	broad.mit.edu	37	chr6	170627504	170627504	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatccagggaagaagttccCatgtgttcagatgctgaatc	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170627504	A	A	170627504	2	1	9	1	0	0	0	0	0	0	0	1	5463	581	21	2		2	FAM120B	6	170627504	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35380	170627504	487563	8254	16405											
FAM120B	84498	broad.mit.edu	37	chr6	170627878	170627878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcccatgtatacaggccCtgaatccaggcaagaagttc	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170627878	A	A	170627878	3	1	9	1	0	0	0	0	1	0	0	0	5463	681	24	2	1402	2	FAM120B	6	170627878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	374	170627878	487189	8255	16406											
PSMB1	5689	broad.mit.edu	37	chr6	170844370	170844370	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtcactatgcagatccGgagtgcgtccccagtgtaca	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170844370	T	T	170844370	2	4	9	1	0	0	0	0	0	0	0	1	12780	1115	39	1		1	PSMB1	6	170844370	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	216492	170844370	270697	8256	16407											
PDGFA	5154	broad.mit.edu	37	chr7	540767	540767	+	Missense_Mutation	SNP	C	A	A													actcacccgtgtcctcttccCgataatccggattcaggctt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	540767	A	A	540767	3	1	9	1	0	0	0	0	1	0	0	0	11751	652	23	1	92	1	PDGFA	7	540767	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08		540767	158597896	8257	16408	106	2									
PDGFA	5154	broad.mit.edu	37	chr7	540776	540776	+	Missense_Mutation	SNP	G	T	T													tgtcctcttcccgataatccGgattcaggcttgtggtcgcg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	540776	T	T	540776	3	4	9	1	0	0	0	0	1	0	0	0	11751	1116	39	1	101	1	PDGFA	7	540776	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	540776	158597887	8258	16409	106	2									
PDGFA	5154	broad.mit.edu	37	chr7	540900	540900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagagagaacagagccCggccatgaatgcctgcatgg	13	12	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	540900	A	A	540900	1	1	9	0	1	0	0	0	0	0	0	0	11751	667	23	1		1	PDGFA	7	540900	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	124	540900	158597763	8259	16410											
PRKAR1B	5575	broad.mit.edu	37	chr7	645868	645868	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgacatagaagttgtctcCttcattccctgtaacaaaag	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	645868	A	A	645868	4	1	9	1	0	0	0	0	0	1	0	0	12610	690	24	2	658	2	PRKAR1B	7	645868	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104968	645868	158492795	8260	16411											
HEATR2	54919	broad.mit.edu	37	chr7	794327	794327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgactgggtggtggggaccCgagtgaagtcggcacagctg	18	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	794327	A	A	794327	2	1	9	1	0	0	0	0	0	0	0	1	7095	644	23	1		1	HEATR2	7	794327	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	148459	794327	158344336	8261	16412											
SUN1	23353	broad.mit.edu	37	chr7	883114	883114	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcgcaccccgcggccccCgggcccgtgtcgagagttta	14	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	883114	A	A	883114	2	1	9	1	0	0	0	0	0	0	0	1	15509	639	23	1		1	SUN1	7	883114	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88787	883114	158255549	8262	16413											
SUN1	23353	broad.mit.edu	37	chr7	889228	889228	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccacctcagtgtaaatGgggaagcgctgtgtaagtat	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	889228	T	T	889228	1	4	9	0	1	0	0	0	0	0	0	0	15509	1363	47	2		2	SUN1	7	889228	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6114	889228	158249435	8263	16414											
SUN1	23353	broad.mit.edu	37	chr7	892462	892462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagcaggtctctccttacGgggccagggcaatttctttt	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	892462	T	T	892462	3	4	9	1	0	0	0	0	1	0	0	0	15509	1116	39	1	1143	1	SUN1	7	892462	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3234	892462	158246201	8264	16415											
SUN1	23353	broad.mit.edu	37	chr7	892493	892493	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcttttcgttcttgccCgtgttgaactgggcaagcat	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	892493	A	A	892493	2	1	9	1	0	0	0	0	0	0	0	1	15509	639	23	1		1	SUN1	7	892493	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	892493	158246170	8265	16416											
ADAP1	11033	broad.mit.edu	37	chr7	943795	943795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtagatgaagatgttacGggtgctgttgtccttcaggt	14	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	943795	T	T	943795	3	4	9	1	0	0	0	0	1	0	0	0	279	1116	39	1	532	1	ADAP1	7	943795	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51302	943795	158194868	8266	16417											
ADAP1	11033	broad.mit.edu	37	chr7	944768	944768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccggctcaaaaactgccCgttgtcccggccacgcttcc	8	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	944768	A	A	944768	3	1	9	1	0	0	0	0	1	0	0	0	279	652	23	1	722	1	ADAP1	7	944768	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	973	944768	158193895	8267	16418											
ZFAND2A	90637	broad.mit.edu	37	chr7	1195074	1195074	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatgaaggaactgaggcGggctctgtccttaccttctc	11	12	2	3	rs139203407	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1195074	T	T	1195074	1	4	9	0	1	0	0	0	0	0	0	0	17753	1131	39	1		1	ZFAND2A	7	1195074	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	250306	1195074	157943589	8268	16419											
ZFAND2A	90637	broad.mit.edu	37	chr7	1197254	1197254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacagtgcagcttcagacGgtgaagatgagaatcttttg	12	6	2	5	rs118068178	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1197254	T	T	1197254	1	4	9	0	1	0	0	0	0	0	0	0	17753	1131	39	1		1	ZFAND2A	7	1197254	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2180	1197254	157941409	8269	16420											
MICALL2	79778	broad.mit.edu	37	chr7	1488346	1488346	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcaaggccaccatgtcctCggcatccagcaaggctggga	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1488346	A	A	1488346	4	1	9	1	0	0	0	0	0	1	0	0	9667	893	31	3	2530	3	MICALL2	7	1488346	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	291092	1488346	157650317	8270	16421											
INTS1	26173	broad.mit.edu	37	chr7	1542443	1542443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaggacctcggccatacGggcagcactaggcctggagg	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1542443	T	T	1542443	1	4	9	0	1	0	0	0	0	0	0	0	7845	1131	39	1		1	INTS1	7	1542443	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	54097	1542443	157596220	8271	16422											
TMEM184A	202915	broad.mit.edu	37	chr7	1594944	1594944	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtccacacgaagatcccCgagacgcctcgggccagtgc	12	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1594944	A	A	1594944	2	1	9	1	0	0	0	0	0	0	0	1	16227	639	23	1		1	TMEM184A	7	1594944	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52501	1594944	157543719	8272	16423											
PSMG3	84262	broad.mit.edu	37	chr7	1608850	1608850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagggagaccagggtgccCatcttcccaaactgggtcac	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1608850	A	A	1608850	3	1	9	1	0	0	0	0	1	0	0	0	12819	594	21	2	250	2	PSMG3	7	1608850	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13906	1608850	157529813	8273	16424											
MAD1L1	8379	broad.mit.edu	37	chr7	1997452	1997452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgaaaggttaggagaccCagctatacagctttatttct	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1997452	A	A	1997452	1	1	9	0	1	0	0	0	0	0	0	0	9235	609	21	2		2	MAD1L1	7	1997452	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	388602	1997452	157141211	8274	16425											
MAD1L1	8379	broad.mit.edu	37	chr7	2054098	2054098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccaccgggaagaagccCcacctggcgacgtgagcccc	13	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2054098	A	A	2054098	1	1	9	0	1	0	0	0	0	0	0	0	9235	638	22	2		2	MAD1L1	7	2054098	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56646	2054098	157084565	8275	16426											
MAD1L1	8379	broad.mit.edu	37	chr7	2255615	2255615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcttcctggagcagccCgttggtctctctcatctccc	8	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2255615	A	A	2255615	3	1	9	1	0	0	0	0	1	0	0	0	9235	652	23	1	1371	1	MAD1L1	7	2255615	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	201517	2255615	156883048	8276	16427											
MAD1L1	8379	broad.mit.edu	37	chr7	2257753	2257753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctcctcagcctgagaccCgccccagcacagacccacat	6	19	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2257753	A	A	2257753	1	1	9	0	1	0	0	0	0	0	0	0	9235	667	23	1		1	MAD1L1	7	2257753	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2138	2257753	156880910	8277	16428											
MAD1L1	8379	broad.mit.edu	37	chr7	2265130	2265130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccatctgcattttctccCgctccacctggatgaggtgg	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2265130	A	A	2265130	3	1	9	1	0	0	0	0	1	0	0	0	9235	652	23	1	2014	1	MAD1L1	7	2265130	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7377	2265130	156873533	8278	16429											
NUDT1	4521	broad.mit.edu	37	chr7	2290424	2290424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttttaagcatgaagtttGggttgcacctcagtgcctcc	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2290424	T	T	2290424	1	4	9	0	1	0	0	0	0	0	0	0	10820	1363	47	2		2	NUDT1	7	2290424	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25294	2290424	156848239	8279	16430											
NUDT1	4521	broad.mit.edu	37	chr7	2290519	2290519	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcaaggacatgtggccCgacgacagctactggtttcc	10	14	1	0	rs143631820		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2290519	A	A	2290519	2	1	9	1	0	0	0	0	0	0	0	1	10820	639	23	1		1	NUDT1	7	2290519	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	2290519	156848144	8280	16431											
NUDT1	4521	broad.mit.edu	37	chr7	2290616	2290616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctggactacacactcCgcgaggtggacacggtctag	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2290616	A	A	2290616	3	1	9	1	0	0	0	0	1	0	0	0	10820	652	23	1	534	1	NUDT1	7	2290616	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	97	2290616	156848047	8281	16432											
SNX8	29886	broad.mit.edu	37	chr7	2314839	2314839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccacgaagtcattgtacCgtctgtataccgaggacttg	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2314839	A	A	2314839	3	1	9	1	0	0	0	0	1	0	0	0	15022	652	23	1	1107	1	SNX8	7	2314839	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24223	2314839	156823824	8282	16433											
SNX8	29886	broad.mit.edu	37	chr7	2314893	2314893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggtcggtgcttagatcCgacgttggaaactatgctgt	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2314893	A	A	2314893	1	1	9	0	1	0	0	0	0	0	0	0	15022	667	23	1		1	SNX8	7	2314893	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	2314893	156823770	8283	16434											
EIF3B	8662	broad.mit.edu	37	chr7	2409096	2409096	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttaacattttattttcCtgttctgcagagacttttct	5	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2409096	A	A	2409096	1	1	9	0	1	0	0	0	0	0	0	0	5053	696	24	2		2	EIF3B	7	2409096	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94203	2409096	156729567	8284	16435											
EIF3B	8662	broad.mit.edu	37	chr7	2409118	2409118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgcagagacttttcttGgtctcctggtggtaacataa	10	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2409118	T	T	2409118	3	4	9	1	0	0	0	0	1	0	0	0	5053	1357	47	2	1453	2	EIF3B	7	2409118	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	2409118	156729545	8285	16436											
IQCE	23288	broad.mit.edu	37	chr7	2618057	2618057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcatctgccagccagccCtgctgggggctacaccgaag	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2618057	A	A	2618057	1	1	9	0	1	0	0	0	0	0	0	0	7876	696	24	2		2	IQCE	7	2618057	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	208939	2618057	156520606	8286	16437											
IQCE	23288	broad.mit.edu	37	chr7	2638017	2638017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgcagccgcaccatgccGggtaatatcctgtccccttg	10	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2638017	T	T	2638017	1	4	9	0	1	0	0	0	0	0	0	0	7876	1131	39	1		1	IQCE	7	2638017	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19960	2638017	156500646	8287	16438											
AMZ1	155185	broad.mit.edu	37	chr7	2749348	2749348	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgcctcatgcagggtgcGctcagcctggacgaggccct	14	15	2	0	rs150265717		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2749348	A	A	2749348	2	1	9	1	0	0	0	0	0	0	0	1	596	1074	38	4		4	AMZ1	7	2749348	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	111331	2749348	156389315	8288	16439											
GNA12	2768	broad.mit.edu	37	chr7	2834770	2834770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtgcatcaacaagaaccCttgagccctagaaaataaaa	6	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2834770	A	A	2834770	3	1	9	1	0	0	0	0	1	0	0	0	6564	681	24	2	840	2	GNA12	7	2834770	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85422	2834770	156303893	8289	16440											
CARD11	84433	broad.mit.edu	37	chr7	2949769	2949769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaagtctcttgtgcagcCgatcccagcctccagcaggc	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2949769	A	A	2949769	3	1	9	1	0	0	0	0	1	0	0	0	2671	652	23	1	297	1	CARD11	7	2949769	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114999	2949769	156188894	8290	16441											
CARD11	84433	broad.mit.edu	37	chr7	2983854	2983854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacccctcacctcgagttGgaggtctcggctcctcatga	11	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2983854	T	T	2983854	3	4	9	1	0	0	0	0	1	0	0	0	2671	1357	47	2	2872	2	CARD11	7	2983854	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34085	2983854	156154809	8291	16442											
CARD11	84433	broad.mit.edu	37	chr7	2987351	2987351	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgtgccggttacactcCacattctcccacaaggcgtc	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2987351	A	A	2987351	2	1	9	1	0	0	0	0	0	0	0	1	2671	581	21	2		2	CARD11	7	2987351	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3497	2987351	156151312	8292	16443											
SDK1	221935	broad.mit.edu	37	chr7	4008918	4008918	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggccagtggctctgtcCggattcctaggttcatgctt	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4008918	A	A	4008918	2	1	9	1	0	0	0	0	0	0	0	1	14081	643	23	1		1	SDK1	7	4008918	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1021567	4008918	155129745	8293	16444											
SDK1	221935	broad.mit.edu	37	chr7	4008968	4008968	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtctacagatcgcgccCgtcttcatccaggatgccgg	14	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4008968	A	A	4008968	2	1	9	1	0	0	0	0	0	0	0	1	14081	639	23	1		1	SDK1	7	4008968	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	4008968	155129695	8294	16445											
SDK1	221935	broad.mit.edu	37	chr7	4014197	4014197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagtactgagacgtttgGtgttagccagtccgcggttt	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4014197	T	T	4014197	1	4	9	0	1	0	0	0	0	0	0	0	14081	1276	44	3		3	SDK1	7	4014197	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5229	4014197	155124466	8295	16446											
SDK1	221935	broad.mit.edu	37	chr7	4026737	4026737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacatgacacagcaggacGgtctgctgtaagagctcagg	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4026737	T	T	4026737	1	4	9	0	1	0	0	0	0	0	0	0	14081	1131	39	1		1	SDK1	7	4026737	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12540	4026737	155111926	8296	16447											
SDK1	221935	broad.mit.edu	37	chr7	4051711	4051711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctctcttgttcctaccCgtcttttatttataggttga	5	10	4	1	rs116071697	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4051711	A	A	4051711	1	1	9	0	1	0	0	0	0	0	0	0	14081	667	23	1		1	SDK1	7	4051711	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24974	4051711	155086952	8297	16448											
SDK1	221935	broad.mit.edu	37	chr7	4051762	4051762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaccacccagtgctccccCgaaaaatatagtggccagtg	9	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4051762	A	A	4051762	3	1	9	1	0	0	0	0	1	0	0	0	14081	652	23	1	2377	1	SDK1	7	4051762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	4051762	155086901	8298	16449											
SDK1	221935	broad.mit.edu	37	chr7	4051842	4051842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagaaacagagcacaacGgggtgttgcgtggatacatc	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4051842	T	T	4051842	3	4	9	1	0	0	0	0	1	0	0	0	14081	1116	39	1	2457	1	SDK1	7	4051842	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	4051842	155086821	8299	16450											
SDK1	221935	broad.mit.edu	37	chr7	4119054	4119054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctttcctaagctgtgacGgactgtaaatctctcccttt	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4119054	T	T	4119054	1	4	9	0	1	0	0	0	0	0	0	0	14081	1131	39	1		1	SDK1	7	4119054	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	67212	4119054	155019609	8300	16451											
SDK1	221935	broad.mit.edu	37	chr7	4152949	4152949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcaagtgaacattgttGggccgagcccctacagtccg	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4152949	T	T	4152949	3	4	9	1	0	0	0	0	1	0	0	0	14081	1348	47	2	3557	2	SDK1	7	4152949	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33895	4152949	154985714	8301	16452											
SDK1	221935	broad.mit.edu	37	chr7	4152976	4152976	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctacagtccgtcttccCgggtcatccagaccctgcag	9	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4152976	A	A	4152976	2	1	9	1	0	0	0	0	0	0	0	1	14081	643	23	1		1	SDK1	7	4152976	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	4152976	154985687	8302	16453											
SDK1	221935	broad.mit.edu	37	chr7	4308336	4308336	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcctcctgacgagcaaccCgtctgcgtacctaagtgtgg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4308336	A	A	4308336	1	1	9	0	1	0	0	0	0	0	0	0	14081	667	23	1		1	SDK1	7	4308336	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	155360	4308336	154830327	8303	16454											
FOXK1	221937	broad.mit.edu	37	chr7	4780549	4780549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaggccccagcctcccCgctgcggccactgtaccccc	10	20	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4780549	A	A	4780549	3	1	9	1	0	0	0	0	1	0	0	0	6074	652	23	1	647	1	FOXK1	7	4780549	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	472213	4780549	154358114	8304	16455											
KIAA0415	9907	broad.mit.edu	37	chr7	4820842	4820842	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgaagaagttctgttcCcggatctgtaaactgctgca	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4820842	A	A	4820842	2	1	9	1	0	0	0	0	0	0	0	1	8245	610	22	2		2	KIAA0415	7	4820842	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40293	4820842	154317821	8305	16456											
KIAA0415	9907	broad.mit.edu	37	chr7	4826015	4826015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacctccacctgttcagcGggcacctcagcaccctcaga	7	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4826015	T	T	4826015	3	4	9	1	0	0	0	0	1	0	0	0	8245	1116	39	1	1305	1	KIAA0415	7	4826015	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5173	4826015	154312648	8306	16457											
PAPOLB	56903	broad.mit.edu	37	chr7	4900156	4900156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgaaattcttccatatcaGgattttctttgggtgctgga	9	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4900156	T	T	4900156	3	4	9	1	0	0	0	0	1	0	0	0	11524	1000	35	2	631	2	PAPOLB	7	4900156	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74141	4900156	154238507	8307	16458											
PAPOLB	56903	broad.mit.edu	37	chr7	4900232	4900232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattcttctccaagctccCaaccaggattcggatctttg	6	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4900232	A	A	4900232	3	1	9	1	0	0	0	0	1	0	0	0	11524	594	21	2	707	2	PAPOLB	7	4900232	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	4900232	154238431	8308	16459											
RBAK	57786	broad.mit.edu	37	chr7	5096926	5096926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcatgttgccattacagGggccagtgtcattcaaagat	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5096926	T	T	5096926	3	4	9	1	0	0	0	0	1	0	0	0	13208	1246	43	2	22	2	RBAK	7	5096926	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	196694	5096926	154041737	8309	16460											
RBAK	57786	broad.mit.edu	37	chr7	5104010	5104010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaccctcactgtacatcGgagatcacacttagaggaga	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5104010	T	T	5104010	3	4	9	1	0	0	0	0	1	0	0	0	13208	1116	39	1	937	1	RBAK	7	5104010	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7084	5104010	154034653	8310	16461											
RBAK	57786	broad.mit.edu	37	chr7	5104222	5104222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatccatgtaacgaatgtGggaaatccttctcccgcaag	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5104222	T	T	5104222	3	4	9	1	0	0	0	0	1	0	0	0	13208	1348	47	2	1149	2	RBAK	7	5104222	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	212	5104222	154034441	8311	16462											
WIPI2	26100	broad.mit.edu	37	chr7	5256240	5256240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtacatccacaacattcGggacatgaaggtgctgcata	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5256240	T	T	5256240	3	4	9	1	0	0	0	0	1	0	0	0	17498	1116	39	1	480	1	WIPI2	7	5256240	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	152018	5256240	153882423	8312	16463											
ACTB	60	broad.mit.edu	37	chr7	5567350	5567350	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaggttttgtcaagaaaGggtgtaacgcaactaagtca	11	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5567350	T	T	5567350	1	4	9	0	1	0	0	0	0	0	0	0	193	1015	35	2		2	ACTB	7	5567350	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	311110	5567350	153571313	8313	16464											
RNF216	54476	broad.mit.edu	37	chr7	5662579	5662579	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccgaagtcatagttgaccCgcacgttgggcagagggggc	16	10	1	2	rs150725128		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5662579	G	G	5662579	3	3	9	1	0	0	0	0	1	0	0	0	13591	652	23	4	91	4	RNF216	7	5662579	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95229	5662579	153476084	8314	16465											
RNF216	54476	broad.mit.edu	37	chr7	5780921	5780921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctggtttgttatttcacGgggctgttggttcagagact	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5780921	T	T	5780921	3	4	9	1	0	0	0	0	1	0	0	0	13591	1116	39	1	2100	1	RNF216	7	5780921	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	118342	5780921	153357742	8315	16466											
RNF216	54476	broad.mit.edu	37	chr7	5781169	5781169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgcttggttatgactcGgtccaggcttgggttctctt	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5781169	T	T	5781169	3	4	9	1	0	0	0	0	1	0	0	0	13591	1116	39	1	2348	1	RNF216	7	5781169	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	248	5781169	153357494	8316	16467											
RSPH10B2	728194	broad.mit.edu	37	chr7	5967977	5967977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacgtacatattattgaccCacgtgttgaactcttcctct	6	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5967977	A	A	5967977	3	1	9	1	0	0	0	0	1	0	0	0	13815	595	21	2	338	2	RSPH10B2	7	5967977	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	186808	5967977	153170686	8317	16468											
PMS2	5395	broad.mit.edu	37	chr7	6026416	6026416	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttcttagttcatcttcGgctgcttgattttctccagg	7	10	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6026416	T	T	6026416	2	4	9	1	0	0	0	0	0	0	0	1	12238	1103	39	1		1	PMS2	7	6026416	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	58439	6026416	153112247	8318	16469											
PMS2	5395	broad.mit.edu	37	chr7	6045572	6045572	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctactaactcctttacCgcagtgcttagactcagtac	5	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6045572	A	A	6045572	2	1	9	1	0	0	0	0	0	0	0	1	12238	639	23	1		1	PMS2	7	6045572	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19156	6045572	153093091	8319	16470											
PMS2	5395	broad.mit.edu	37	chr7	6045601	6045601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagactcagtaccacctgccCagagcaaatctgatggactg	9	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6045601	A	A	6045601	3	1	9	1	0	0	0	0	1	0	0	0	12238	594	21	2	2559	2	PMS2	7	6045601	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	6045601	153093062	8320	16471											
AIMP2	7965	broad.mit.edu	37	chr7	6054813	6054813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcaagctcttgagtccCgccaagatgatattttaaaa	7	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6054813	A	A	6054813	3	1	9	1	0	0	0	0	1	0	0	0	434	652	23	1	178	1	AIMP2	7	6054813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9212	6054813	153083850	8321	16472											
USP42	84132	broad.mit.edu	37	chr7	6182560	6182560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgcctcttctcttccCaggctgctcagagtgtcaac	9	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6182560	A	A	6182560	1	1	9	0	1	0	0	0	0	0	0	0	17200	609	21	2		2	USP42	7	6182560	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	127747	6182560	152956103	8322	16473											
USP42	84132	broad.mit.edu	37	chr7	6185201	6185201	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatatgtctcaacccaacGgagagccaattgtctacgtc	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6185201	T	T	6185201	4	4	9	1	0	0	0	0	0	1	0	0	17200	1117	39	1	1079	1	USP42	7	6185201	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2641	6185201	152953462	8323	16474											
USP42	84132	broad.mit.edu	37	chr7	6187533	6187533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgataaaggtaacagtcCttagggagaagaacattttt	9	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6187533	A	A	6187533	1	1	9	0	1	0	0	0	0	0	0	0	17200	696	24	2		2	USP42	7	6187533	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2332	6187533	152951130	8324	16475											
CYTH3	9265	broad.mit.edu	37	chr7	6204594	6204594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctattttttattggcaatcCttcgtttcctcgttgccaac	6	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6204594	A	A	6204594	3	1	9	1	0	0	0	0	1	0	0	0	4238	681	24	2	22	2	CYTH3	7	6204594	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17061	6204594	152934069	8325	16476											
CYTH3	9265	broad.mit.edu	37	chr7	6227299	6227299	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgttacctctcctctacGgaagttagattgtcgatctc	7	10	3	1	rs146001372		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6227299	T	T	6227299	2	4	9	1	0	0	0	0	0	0	0	1	4238	1103	39	1		1	CYTH3	7	6227299	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22705	6227299	152911364	8326	16477											
ZDHHC4	55146	broad.mit.edu	37	chr7	6621824	6621824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcattaccttcttctgccCtatctgctgctaggtgtaaa	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6621824	A	A	6621824	2	1	9	1	0	0	0	0	0	0	0	1	17743	668	24	2		2	ZDHHC4	7	6621824	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	394525	6621824	152516839	8327	16478											
C7orf26	79034	broad.mit.edu	37	chr7	6631261	6631261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatttcttaacgcttttccGggatttcttttgcagagact	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6631261	T	T	6631261	1	4	9	0	1	0	0	0	0	0	0	0	2406	1131	39	1		1	C7orf26	7	6631261	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9437	6631261	152507402	8328	16479											
ZNF12	7559	broad.mit.edu	37	chr7	6731666	6731666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctggcagaaggatttccCacactgattacattcgtaag	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6731666	A	A	6731666	3	1	9	1	0	0	0	0	1	0	0	0	17844	594	21	2	1190	2	ZNF12	7	6731666	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100405	6731666	152406997	8329	16480											
ZNF12	7559	broad.mit.edu	37	chr7	6737455	6737455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggcccctgaaatggcacCgtgattggaattgggtgacg	14	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6737455	A	A	6737455	1	1	9	0	1	0	0	0	0	0	0	0	17844	667	23	1		1	ZNF12	7	6737455	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5789	6737455	152401208	8330	16481											
RSPH10B2	728194	broad.mit.edu	37	chr7	6820486	6820486	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttacaaaactgatgaccGagaacattcgtccaaatgcc	7	10	0	3	rs144776037	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6820486	T	T	6820486	4	4	9	1	0	0	0	0	0	1	0	0	13815	1059	37	3	4311	3	RSPH10B2	7	6820486	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83031	6820486	152318177	8331	16482											
COL28A1	340267	broad.mit.edu	37	chr7	7413031	7413031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagttgattatgcctatgcGggccgtggcaaggtccagag	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7413031	T	T	7413031	3	4	9	1	0	0	0	0	1	0	0	0	3718	1116	39	1	887	1	COL28A1	7	7413031	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	592545	7413031	151725632	8332	16483											
COL28A1	340267	broad.mit.edu	37	chr7	7480433	7480433	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacatacctttggtccttcGggccctggaagtcccctctg	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7480433	T	T	7480433	2	4	9	1	0	0	0	0	0	0	0	1	3718	1103	39	1		1	COL28A1	7	7480433	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	67402	7480433	151658230	8333	16484											
COL28A1	340267	broad.mit.edu	37	chr7	7493098	7493098	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtaagccctgtcctgcGggcccttgtggaccaggtgg	15	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7493098	T	T	7493098	2	4	9	1	0	0	0	0	0	0	0	1	3718	1103	39	1		1	COL28A1	7	7493098	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12665	7493098	151645565	8334	16485											
COL28A1	340267	broad.mit.edu	37	chr7	7550682	7550682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggaaacgcaacccaaaaGggatcacagctgtaagcagt	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7550682	T	T	7550682	1	4	9	0	1	0	0	0	0	0	0	0	3718	1015	35	2		2	COL28A1	7	7550682	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57584	7550682	151587981	8335	16486											
RPA3	6119	broad.mit.edu	37	chr7	7678701	7678701	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattaacacttaaacatacGggttccatcaactcgatggt	6	9	1	0	rs143454521		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7678701	T	T	7678701	2	4	9	1	0	0	0	0	0	0	0	1	13649	1130	39	1		1	RPA3	7	7678701	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	128019	7678701	151459962	8336	16487											
GLCCI1	113263	broad.mit.edu	37	chr7	8043565	8043565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaaatctcagcaagttcGgacctctagtacaataaggc	9	10	2	0	rs148643567		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8043565	T	T	8043565	3	4	9	1	0	0	0	0	1	0	0	0	6495	1116	39	1	491	1	GLCCI1	7	8043565	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	364864	8043565	151095098	8337	16488											
GLCCI1	113263	broad.mit.edu	37	chr7	8125841	8125841	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtctcgtcagcctatctcGgcccctctcttttcatgtcc	7	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8125841	T	T	8125841	2	4	9	1	0	0	0	0	0	0	0	1	6495	1103	39	1		1	GLCCI1	7	8125841	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	82276	8125841	151012822	8338	16489											
GLCCI1	113263	broad.mit.edu	37	chr7	8125893	8125893	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttaatttcatcccaaccGgatcagctttctgtcctgta	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8125893	T	T	8125893	4	4	9	1	0	0	0	0	0	1	0	0	6495	1117	39	1	1399	1	GLCCI1	7	8125893	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	8125893	151012770	8339	16490											
PHF14	9678	broad.mit.edu	37	chr7	11046378	11046378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaggtgggtgacatgcGgatcttcttttttggtggct	15	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11046378	T	T	11046378	1	4	9	0	1	0	0	0	0	0	0	0	11920	1131	39	1		1	PHF14	7	11046378	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2920485	11046378	148092285	8340	16491											
PHF14	9678	broad.mit.edu	37	chr7	11075436	11075436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggattcatgtcaaaaccCgtatgtttttgttttaaggt	9	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11075436	A	A	11075436	1	1	9	0	1	0	0	0	0	0	0	0	11920	667	23	1		1	PHF14	7	11075436	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29058	11075436	148063227	8341	16492											
THSD7A	221981	broad.mit.edu	37	chr7	11464333	11464333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcttacctcacttttcGggtttgcacgccctctccac	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11464333	T	T	11464333	2	4	9	1	0	0	0	0	0	0	0	1	16002	1124	39	1		1	THSD7A	7	11464333	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	388897	11464333	147674330	8342	16493											
THSD7A	221981	broad.mit.edu	37	chr7	11485882	11485882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcattatatttgtcacaaGgacaatactgagtctcaatc	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11485882	T	T	11485882	3	4	9	1	0	0	0	0	1	0	0	0	16002	1000	35	2	2163	2	THSD7A	7	11485882	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21549	11485882	147652781	8343	16494											
THSD7A	221981	broad.mit.edu	37	chr7	11501711	11501711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgcagtctcggccccCgttggctggcagctgaatga	13	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11501711	A	A	11501711	3	1	9	1	0	0	0	0	1	0	0	0	16002	652	23	1	2617	1	THSD7A	7	11501711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15829	11501711	147636952	8344	16495											
THSD7A	221981	broad.mit.edu	37	chr7	11501737	11501737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagctgaatgatgaccCgatgcctagactgcttcctg	11	12	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11501737	A	A	11501737	3	1	9	1	0	0	0	0	1	0	0	0	16002	652	23	1	2643	1	THSD7A	7	11501737	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	11501737	147636926	8345	16496											
THSD7A	221981	broad.mit.edu	37	chr7	11676569	11676569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggaccacattcatctccCatacatcggccccatggacc	7	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11676569	A	A	11676569	3	1	9	1	0	0	0	0	1	0	0	0	16002	594	21	2	4867	2	THSD7A	7	11676569	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	174832	11676569	147462094	8346	16497											
TMEM106B	54664	broad.mit.edu	37	chr7	12263949	12263949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcgacgtgaaatacattGgtgtaaaatcagcctatgtc	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12263949	T	T	12263949	3	4	9	1	0	0	0	0	1	0	0	0	16144	1348	47	2	389	2	TMEM106B	7	12263949	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	587380	12263949	146874714	8347	16498											
ARL4A	10124	broad.mit.edu	37	chr7	12727889	12727889	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcacctggaaatggggaatGggctgtcagaccagacttct	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12727889	C	C	12727889	3	2	9	1	0	0	0	0	1	0	0	0	940	1348	47	4	12	4	ARL4A	7	12727889	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	463940	12727889	146410774	8348	16499											
ETV1	2115	broad.mit.edu	37	chr7	13975399	13975399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgagctgggaaggccCggtcaggtttcggtgtatga	19	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13975399	A	A	13975399	3	1	9	1	0	0	0	0	1	0	0	0	5319	652	23	1	973	1	ETV1	7	13975399	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1247510	13975399	145163264	8349	16500											
ETV1	2115	broad.mit.edu	37	chr7	14028554	14028554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcccaacccccgtgccccCtcccttctcattttctccct	2	22	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14028554	A	A	14028554	1	1	9	0	1	0	0	0	0	0	0	0	5319	696	24	2		2	ETV1	7	14028554	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53155	14028554	145110109	8350	16501											
DGKB	1607	broad.mit.edu	37	chr7	14216428	14216428	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaaagaggaaagcaaaactGagattgacatagcatatcaa	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14216428	T	T	14216428	1	4	9	0	1	0	0	0	0	0	0	0	4506	1305	45	3		3	DGKB	7	14216428	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	187874	14216428	144922235	8351	16502											
MEOX2	4223	broad.mit.edu	37	chr7	15725393	15725393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgcaggaagccacagaGggcaacacattcccatcttc	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15725393	T	T	15725393	1	4	9	0	1	0	0	0	0	0	0	0	9567	1015	35	2		2	MEOX2	7	15725393	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1508965	15725393	143413270	8352	16503											
ISPD	729920	broad.mit.edu	37	chr7	16415823	16415823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagcaaccatcagcagatGgactgacgacagtagataca	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16415823	T	T	16415823	3	4	9	1	0	0	0	0	1	0	0	0	7934	1348	47	2	809	2	ISPD	7	16415823	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	690430	16415823	142722840	8353	16504											
ANKMY2	57037	broad.mit.edu	37	chr7	16685205	16685205	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtgaaccattgctccCgccagcttgaaggttattcc	8	11	0	2	rs148014743	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16685205	A	A	16685205	1	1	9	0	1	0	0	0	0	0	0	0	635	667	23	1		1	ANKMY2	7	16685205	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	269382	16685205	142453458	8354	16505											
AHR	196	broad.mit.edu	37	chr7	17382698	17382698	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcctgtaattccaagccCaattttgaccctggtttttg	7	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17382698	A	A	17382698	1	1	9	0	1	0	0	0	0	0	0	0	416	609	21	2		2	AHR	7	17382698	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	697493	17382698	141755965	8355	16506											
SNX13	23161	broad.mit.edu	37	chr7	17843055	17843055	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttaccttaaaaaatgatTgctttatgtcttgacctaat	4	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17843055	A	A	17843055	3	1	9	1	0	0	0	0	1	0	0	0	14998	1812	63	5	684	5	SNX13	7	17843055	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	460357	17843055	141295608	8356	16507											
HDAC9	9734	broad.mit.edu	37	chr7	18624986	18624986	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcaggatgatgatgccCgtggtggaccctgttgtccg	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18624986	A	A	18624986	2	1	9	1	0	0	0	0	0	0	0	1	7081	639	23	1		1	HDAC9	7	18624986	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	781931	18624986	140513677	8357	16508											
MACC1	346389	broad.mit.edu	37	chr7	20198240	20198240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttttaccttaccttcccCgaggagagctattgtgtccc	8	13	0	1	rs143688163	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20198240	A	A	20198240	3	1	9	1	0	0	0	0	1	0	0	0	9231	652	23	1	826	1	MACC1	7	20198240	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1573254	20198240	138940423	8358	16509											
ITGB8	3696	broad.mit.edu	37	chr7	20421418	20421418	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagatcagacgtctcatctCgctcttgatagcaaattggc	8	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20421418	A	A	20421418	2	1	9	1	0	0	0	0	0	0	0	1	7971	871	31	3		3	ITGB8	7	20421418	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	223178	20421418	138717245	8359	16510											
ITGB8	3696	broad.mit.edu	37	chr7	20445622	20445622	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctttttttttcttgcagAaaatattatagtccaccacc	4	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20445622	T	T	20445622	1	4	9	0	1	0	0	0	0	0	0	0	7971	261	9	5		5	ITGB8	7	20445622	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	24204	20445622	138693041	8360	16511											
ABCB5	340273	broad.mit.edu	37	chr7	20682988	20682988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acatcggtgaacttaacactCgcatgacagagtaagaggat	10	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20682988	A	A	20682988	3	1	9	1	0	0	0	0	1	0	0	0	44	884	31	3	514	3	ABCB5	7	20682988	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	237366	20682988	138455675	8361	16512											
SP8	221833	broad.mit.edu	37	chr7	20824767	20824767	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccaccagctggaggcgccGgccgagcccacctcgcccgc	12	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20824767	A	A	20824767	2	1	9	1	0	0	0	0	0	0	0	1	15084	1103	39	4		4	SP8	7	20824767	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	141779	20824767	138313896	8362	16513											
DNAH11	8701	broad.mit.edu	37	chr7	21640512	21640512	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcaaatgaagaaattccCgaacaaccaccaactcttga	5	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21640512	A	A	21640512	2	1	9	1	0	0	0	0	0	0	0	1	4639	639	23	1		1	DNAH11	7	21640512	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	815745	21640512	137498151	8363	16514											
DNAH11	8701	broad.mit.edu	37	chr7	21723447	21723447	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtctcaacttcgtcacCgatgggaggatacccagaaa	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21723447	A	A	21723447	2	1	9	1	0	0	0	0	0	0	0	1	4639	644	23	1		1	DNAH11	7	21723447	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82935	21723447	137415216	8364	16515											
DNAH11	8701	broad.mit.edu	37	chr7	21751286	21751286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcttctggatgtttgcGgcattgcttttgcccatggg	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21751286	T	T	21751286	1	4	9	0	1	0	0	0	0	0	0	0	4639	1131	39	1		1	DNAH11	7	21751286	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27839	21751286	137387377	8365	16516											
DNAH11	8701	broad.mit.edu	37	chr7	21775420	21775420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggattacatagtatccCgtgtgcctttcaactactac	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21775420	A	A	21775420	3	1	9	1	0	0	0	0	1	0	0	0	4639	652	23	1	7807	1	DNAH11	7	21775420	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24134	21775420	137363243	8366	16517											
CDCA7L	55536	broad.mit.edu	37	chr7	21956380	21956380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcatccatacctgtttccCtgactctagtgagtcaaaac	5	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21956380	A	A	21956380	3	1	9	1	0	0	0	0	1	0	0	0	3121	681	24	2	1243	2	CDCA7L	7	21956380	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	180960	21956380	137182283	8367	16518											
RAPGEF5	9771	broad.mit.edu	37	chr7	22186675	22186675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagatcctcagtaattccCaaatgttttgcactgcattg	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22186675	A	A	22186675	1	1	9	0	1	0	0	0	0	0	0	0	13155	609	21	2		2	RAPGEF5	7	22186675	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	230295	22186675	136951988	8368	16519											
RAPGEF5	9771	broad.mit.edu	37	chr7	22189977	22189977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagattacaggtatgagcCacctcgcctggcctgtttgt	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22189977	A	A	22189977	1	1	9	0	1	0	0	0	0	0	0	0	13155	609	21	2		2	RAPGEF5	7	22189977	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3302	22189977	136948686	8369	16520											
RAPGEF5	9771	broad.mit.edu	37	chr7	22197436	22197436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcaaggtctccaaaccGgatcacctaattttaggtat	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22197436	T	T	22197436	1	4	9	0	1	0	0	0	0	0	0	0	13155	1131	39	1		1	RAPGEF5	7	22197436	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7459	22197436	136941227	8370	16521											
FAM126A	84668	broad.mit.edu	37	chr7	22985688	22985688	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactactgtttgataaaccCgactggctggtactagacgc	10	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22985688	A	A	22985688	2	1	9	1	0	0	0	0	0	0	0	1	5475	639	23	1		1	FAM126A	7	22985688	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	788252	22985688	136152975	8371	16522											
FAM126A	84668	broad.mit.edu	37	chr7	22999875	22999875	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagttacgtatttcttacCatgtcttttccacctatgac	5	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22999875	A	A	22999875	4	1	9	1	0	0	0	0	0	1	0	0	5475	608	21	2	582	2	FAM126A	7	22999875	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14187	22999875	136138788	8372	16523											
GPNMB	10457	broad.mit.edu	37	chr7	23300230	23300230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaactacaagtggagcttcGgggataatactggcctgttt	11	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23300230	T	T	23300230	3	4	9	1	0	0	0	0	1	0	0	0	6685	1116	39	1	878	1	GPNMB	7	23300230	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	300355	23300230	135838433	8373	16524											
C7orf30	115416	broad.mit.edu	37	chr7	23340598	23340598	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttagtggaacttctaccCgacacttacatgccatggcc	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23340598	A	A	23340598	2	1	9	1	0	0	0	0	0	0	0	1	2411	644	23	1		1	C7orf30	7	23340598	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40368	23340598	135798065	8374	16525											
IGF2BP3	10643	broad.mit.edu	37	chr7	23353223	23353223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtttcacctcttctttaGgactaacaaagttttcttct	4	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23353223	T	T	23353223	3	4	9	1	0	0	0	0	1	0	0	0	7645	1000	35	2	306	2	IGF2BP3	7	23353223	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12625	23353223	135785440	8375	16526											
IGF2BP3	10643	broad.mit.edu	37	chr7	23401203	23401204	+	Missense_Mutation	DNP	CG	AT	AT													acatttacaactgcagtttcCgagtcagtgttcactagagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	23401204	AT	AT	23401203	3	1	9	1	0	0	0	0	1	0	0	0	7645	639	23	1	1432	1	IGF2BP3	7	23401203	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	47980	23401203	135737460	8376	16527											
IGF2BP3	10643	broad.mit.edu	37	chr7	23508144	23508144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacttctatgggtttccCgtgcagttctattttacctg	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23508144	A	A	23508144	3	1	9	1	0	0	0	0	1	0	0	0	7645	652	23	1	1602	1	IGF2BP3	7	23508144	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106941	23508144	135630519	8377	16528											
TRA2A	29896	broad.mit.edu	37	chr7	23561430	23561430	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacacgagcaggagttccCgttggagattttgactgaga	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23561430	A	A	23561430	2	1	9	1	0	0	0	0	0	0	0	1	16557	639	23	1		1	TRA2A	7	23561430	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53286	23561430	135577233	8378	16529											
STK31	56164	broad.mit.edu	37	chr7	23751789	23751789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacactaaaaattattttgGggtgtaagagctagatgata	10	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23751789	T	T	23751789	1	4	9	0	1	0	0	0	0	0	0	0	15414	1247	43	2		2	STK31	7	23751789	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	190359	23751789	135386874	8379	16530											
STK31	56164	broad.mit.edu	37	chr7	23826428	23826428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgaagaagtttttacttGgagtcacattctctgttttg	9	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23826428	T	T	23826428	1	4	9	0	1	0	0	0	0	0	0	0	15414	1363	47	2		2	STK31	7	23826428	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	74639	23826428	135312235	8380	16531											
STK31	56164	broad.mit.edu	37	chr7	23826480	23826480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctatggcttatctgatGgtcccatactaccctagggc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23826480	T	T	23826480	3	4	9	1	0	0	0	0	1	0	0	0	15414	1348	47	2	2502	2	STK31	7	23826480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	23826480	135312183	8381	16532											
MPP6	51678	broad.mit.edu	37	chr7	24720139	24720139	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactaccaagcttctgacCgtgagctaaccatacgattt	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24720139	A	A	24720139	2	1	9	1	0	0	0	0	0	0	0	1	9832	666	23	1		1	MPP6	7	24720139	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	893659	24720139	134418524	8382	16533											
MPP6	51678	broad.mit.edu	37	chr7	24727158	24727158	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgataatctagacaaagcCtttgaaaaactgcaaactgc	6	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24727158	A	A	24727158	2	1	9	1	0	0	0	0	0	0	0	1	9832	668	24	2		2	MPP6	7	24727158	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7019	24727158	134411505	8383	16534											
MPP6	51678	broad.mit.edu	37	chr7	24727208	24727208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagaatggaaccacagtGggtcccaatcagctgggttt	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24727208	T	T	24727208	3	4	9	1	0	0	0	0	1	0	0	0	9832	1357	47	2	1640	2	MPP6	7	24727208	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	24727208	134411455	8384	16535											
OSBPL3	26031	broad.mit.edu	37	chr7	24849546	24849546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgccttcaatctcatGggcattagtgctccagtatt	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24849546	T	T	24849546	3	4	9	1	0	0	0	0	1	0	0	0	11373	1348	47	2	482	2	OSBPL3	7	24849546	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	122338	24849546	134289117	8385	16536											
OSBPL3	26031	broad.mit.edu	37	chr7	24870421	24870421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggaagcccttgtcctccCgaatacattcatatgtttct	6	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24870421	A	A	24870421	3	1	9	1	0	0	0	0	1	0	0	0	11373	652	23	1	845	1	OSBPL3	7	24870421	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20875	24870421	134268242	8386	16537											
OSBPL3	26031	broad.mit.edu	37	chr7	24874289	24874289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgatgttactgctgctcGggcagggcgccggcaggcac	17	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24874289	T	T	24874289	3	4	9	1	0	0	0	0	1	0	0	0	11373	1116	39	1	1137	1	OSBPL3	7	24874289	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3868	24874289	134264374	8387	16538											
OSBPL3	26031	broad.mit.edu	37	chr7	24881819	24881819	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtttagtgtttctgatgatGgattatttactgaacagatt	9	3	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24881819	C	C	24881819	1	2	9	0	1	0	0	0	0	0	0	0	11373	1363	47	4		4	OSBPL3	7	24881819	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7530	24881819	134256844	8388	16539											
OSBPL3	26031	broad.mit.edu	37	chr7	24905011	24905011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgtaaccataatggaactCgtgtctcaccaccacaagaa	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24905011	A	A	24905011	3	1	9	1	0	0	0	0	1	0	0	0	11373	884	31	3	2108	3	OSBPL3	7	24905011	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23192	24905011	134233652	8389	16540											
OSBPL3	26031	broad.mit.edu	37	chr7	24911572	24911572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccaagaccaaccttacCttatgccagccttttaaggg	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24911572	A	A	24911572	3	1	9	1	0	0	0	0	1	0	0	0	11373	695	24	2	2534	2	OSBPL3	7	24911572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6561	24911572	134227091	8390	16541											
NPVF	64111	broad.mit.edu	37	chr7	25266262	25266262	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttgactgtttttgatcGggattctggatttcttggtg	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25266262	T	T	25266262	2	4	9	1	0	0	0	0	0	0	0	1	10700	1103	39	1		1	NPVF	7	25266262	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	354690	25266262	133872401	8391	16542											
NFE2L3	9603	broad.mit.edu	37	chr7	26224287	26224287	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccatcttgctttgtccCaacaatacatttagaagaga	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26224287	A	A	26224287	2	1	9	1	0	0	0	0	0	0	0	1	10464	581	21	2		2	NFE2L3	7	26224287	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	958025	26224287	132914376	8392	16543											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26236973	26236973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggctcaactactctccCatcaattgaatgaggtcttg	7	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26236973	A	A	26236973	3	1	9	1	0	0	0	0	1	0	0	0	7326	594	21	2	831	2	HNRNPA2B1	7	26236973	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12686	26236973	132901690	8393	16544											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26240220	26240220	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggactcagtcgcttcagccCgatttcccgcagccgagcga	11	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26240220	A	A	26240220	1	1	9	0	1	0	0	0	0	0	0	0	7326	667	23	1		1	HNRNPA2B1	7	26240220	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3247	26240220	132898443	8394	16545											
HOXA1	3198	broad.mit.edu	37	chr7	27135563	27135563	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctggtcctgcgaagccCggcgtgactgtgccaacttt	12	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27135563	A	A	27135563	1	1	9	0	1	0	0	0	0	0	0	0	7355	667	23	1		1	HOXA1	7	27135563	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	895343	27135563	132003100	8395	16546											
HOXA2	3199	broad.mit.edu	37	chr7	27140423	27140423	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcagctgaaatatctacGggactgtcgagggaacctgg	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27140423	T	T	27140423	2	4	9	1	0	0	0	0	0	0	0	1	7359	1103	39	1		1	HOXA2	7	27140423	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4860	27140423	131998240	8396	16547											
HOXA3	3200	broad.mit.edu	37	chr7	27147548	27147548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactatcacaggtgggtgaGcttgggtgcttcctgaattc	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27147548	A	A	27147548	3	1	9	1	0	0	0	0	1	0	0	0	7360	971	34	4	17	4	HOXA3	7	27147548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7125	27147548	131991115	8397	16548											
HOXA3	3200	broad.mit.edu	37	chr7	27148003	27148003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcgactggggctcatacGggacgctgttgaccagcgaa	17	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27148003	T	T	27148003	3	4	9	1	0	0	0	0	1	0	0	0	7360	1116	39	1	472	1	HOXA3	7	27148003	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	455	27148003	131990660	8398	16549											
HOXA7	3204	broad.mit.edu	37	chr7	27196117	27196117	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggaacagagaagccccCgccgtatatttgctaaaaag	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27196117	A	A	27196117	2	1	9	1	0	0	0	0	0	0	0	1	7364	639	23	1		1	HOXA7	7	27196117	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48114	27196117	131942546	8399	16550											
HOXA9	3205	broad.mit.edu	37	chr7	27203142	27203142	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagggtgggggtgagagaaGggagaaggcggaagggggac	24	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27203142	T	T	27203142	1	4	9	0	1	0	0	0	0	0	0	0	7365	1015	35	2		2	HOXA9	7	27203142	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	7025	27203142	131935521	8400	16551											
HOXA9	3205	broad.mit.edu	37	chr7	27203329	27203329	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgagcagtcgagccacctCgtacctgcggtccctggtga	13	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27203329	A	A	27203329	4	1	9	1	0	0	0	0	0	1	0	0	7365	893	31	3	110	3	HOXA9	7	27203329	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	187	27203329	131935334	8401	16552											
HOXA9	3205	broad.mit.edu	37	chr7	27203507	27203507	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagcagaagacgcacatcCcgctggggcaaatgagcctc	13	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27203507	G	G	27203507	1	3	9	0	1	0	0	0	0	0	0	0	7365	638	22	4		4	HOXA9	7	27203507	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	178	27203507	131935156	8402	16553											
HOXA11	3207	broad.mit.edu	37	chr7	27222531	27222531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagtgaggttgagcatgcGggacagttgcaggcgcttct	15	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27222531	T	T	27222531	3	4	9	1	0	0	0	0	1	0	0	0	7357	1116	39	1	119	1	HOXA11	7	27222531	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19024	27222531	131916132	8403	16554											
TAX1BP1	8887	broad.mit.edu	37	chr7	27827104	27827104	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtccagactttaaaaaattTagatgggaacaaagaaagcg	10	5	0	3	rs141015886		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27827104	A	A	27827104	4	1	9	1	0	0	0	0	0	1	0	0	15713	1764	61	5	946	5	TAX1BP1	7	27827104	Nonsense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	604573	27827104	131311559	8404	16555											
CREB5	9586	broad.mit.edu	37	chr7	28547243	28547243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgttttcagatcaaactcCgaccccaacgagattcctga	6	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28547243	A	A	28547243	3	1	9	1	0	0	0	0	1	0	0	0	3892	652	23	1	193	1	CREB5	7	28547243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	720139	28547243	130591420	8405	16556											
CPVL	54504	broad.mit.edu	37	chr7	29070288	29070288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgccttcttgtattcctGggatcctttccagtccatgc	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29070288	T	T	29070288	3	4	9	1	0	0	0	0	1	0	0	0	3867	1357	47	2	213	2	CPVL	7	29070288	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	523045	29070288	130068375	8406	16557											
CHN2	1124	broad.mit.edu	37	chr7	29252060	29252060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgagatgcctcacacGgagactgtctctcctcttct	8	14	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29252060	T	T	29252060	1	4	9	0	1	0	0	0	0	0	0	0	3394	1131	39	1		1	CHN2	7	29252060	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	181772	29252060	129886603	8407	16558											
CHN2	1124	broad.mit.edu	37	chr7	29407579	29407579	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaagaggcacctcgtccCaagagaatcatttgtcctcg	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29407579	A	A	29407579	2	1	9	1	0	0	0	0	0	0	0	1	3394	581	21	2		2	CHN2	7	29407579	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	155519	29407579	129731084	8408	16559											
CHN2	1124	broad.mit.edu	37	chr7	29407599	29407599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagagaatcatttgtcctcGggaggtcagtgctcagctat	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29407599	T	T	29407599	3	4	9	1	0	0	0	0	1	0	0	0	3394	1116	39	1	150	1	CHN2	7	29407599	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	29407599	129731064	8409	16560											
WIPF3	644150	broad.mit.edu	37	chr7	29943940	29943940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccaagcggaagcagtcGggcagagctctgatgacatc	14	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29943940	T	T	29943940	3	4	9	1	0	0	0	0	1	0	0	0	17496	1116	39	1	1416	1	WIPF3	7	29943940	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	536341	29943940	129194723	8410	16561											
SCRN1	9805	broad.mit.edu	37	chr7	29963594	29963594	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttaaagaacttaatctcCgtgtcaacacagtcatagaa	5	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29963594	A	A	29963594	2	1	9	1	0	0	0	0	0	0	0	1	14051	639	23	1		1	SCRN1	7	29963594	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19654	29963594	129175069	8411	16562											
SCRN1	9805	broad.mit.edu	37	chr7	29976211	29976211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaagtagtgaatgcacGgagagcttctattctgcggc	13	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29976211	T	T	29976211	3	4	9	1	0	0	0	0	1	0	0	0	14051	1116	39	1	390	1	SCRN1	7	29976211	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12617	29976211	129162452	8412	16563											
SCRN1	9805	broad.mit.edu	37	chr7	29976301	29976301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactccgctggctttgtccCgtaaggtgttcatcatagtc	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29976301	A	A	29976301	3	1	9	1	0	0	0	0	1	0	0	0	14051	652	23	1	480	1	SCRN1	7	29976301	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	29976301	129162362	8413	16564											
PLEKHA8	84725	broad.mit.edu	37	chr7	30118297	30118297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagaagctttcagtattgGgatgcagagggacctcagcc	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30118297	T	T	30118297	3	4	9	1	0	0	0	0	1	0	0	0	12157	1247	43	2		2	PLEKHA8	7	30118297	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	141996	30118297	129020366	8414	16565											
NOD1	10392	broad.mit.edu	37	chr7	30485798	30485798	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgttcttcacagccagggcGagatacttccctccttcact	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30485798	T	T	30485798	2	4	9	1	0	0	0	0	0	0	0	1	10611	1045	37	3		3	NOD1	7	30485798	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	367501	30485798	128652865	8415	16566											
NOD1	10392	broad.mit.edu	37	chr7	30486533	30486533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatctttgaacaacagaaGggggtgatcaagagaatata	10	4	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30486533	T	T	30486533	1	4	9	0	1	0	0	0	0	0	0	0	10611	1015	35	2		2	NOD1	7	30486533	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	735	30486533	128652130	8416	16567											
GGCT	79017	broad.mit.edu	37	chr7	30536915	30536915	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaatataatttaacgtacCataccacagctttatttgcc	5	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30536915	G	G	30536915	1	3	9	0	1	0	0	0	0	0	0	0	6419	609	21	4		4	GGCT	7	30536915	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50382	30536915	128601748	8417	16568											
GGCT	79017	broad.mit.edu	37	chr7	30544314	30544314	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtgacgtccttgcagccCgagttggccatatcccacta	9	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30544314	A	A	30544314	2	1	9	1	0	0	0	0	0	0	0	1	6419	639	23	1		1	GGCT	7	30544314	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7399	30544314	128594349	8418	16569											
GARS	2617	broad.mit.edu	37	chr7	30649286	30649286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggaaatgatctatcccCtccagtgtcttttaacttaa	5	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30649286	A	A	30649286	3	1	9	1	0	0	0	0	1	0	0	0	6304	681	24	2	847	2	GARS	7	30649286	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104972	30649286	128489377	8419	16570											
CRHR2	1395	broad.mit.edu	37	chr7	30693116	30693116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgctgtggaagctgatcCgtgtgggtgatgtagggatg	18	4	0	3	rs143322026		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30693116	A	A	30693116	3	1	9	1	0	0	0	0	1	0	0	0	3904	652	23	1	43	1	CRHR2	7	30693116	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43830	30693116	128445547	8420	16571											
CRHR2	1395	broad.mit.edu	37	chr7	30695258	30695258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgacaggtcgtcctcccCgggattgacgaagaagagca	13	11	0	4	rs147187610		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30695258	A	A	30695258	3	1	9	1	0	0	0	0	1	0	0	0	3904	652	23	1	256	1	CRHR2	7	30695258	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2142	30695258	128443405	8421	16572											
INMT	11185	broad.mit.edu	37	chr7	30793359	30793359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccacaggaggcctccaagGggacacgctgattgacattg	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30793359	T	T	30793359	3	4	9	1	0	0	0	0	1	0	0	0	7815	1232	43	2	173	2	INMT	7	30793359	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98101	30793359	128345304	8422	16573											
FAM188B	84182	broad.mit.edu	37	chr7	30825451	30825451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcccatgcagacggtccCgggtgaaactcctgtgttga	12	11	0	3	rs111491161		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30825451	A	A	30825451	3	1	9	1	0	0	0	0	1	0	0	0	5561	652	23	1	520	1	FAM188B	7	30825451	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32092	30825451	128313212	8423	16574											
FAM188B	84182	broad.mit.edu	37	chr7	30915082	30915082	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaactgattcagacttgatGagtctttcccctttctctca	6	11	4	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30915082	T	T	30915082	1	4	9	0	1	0	0	0	0	0	0	0	5561	1305	45	3		3	FAM188B	7	30915082	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	89631	30915082	128223581	8424	16575											
FAM188B	84182	broad.mit.edu	37	chr7	30931622	30931622	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagaccccatcctgtgacCgttggatgtgggtaaaccct	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30931622	A	A	30931622	1	1	9	0	1	0	0	0	0	0	0	0	5561	667	23	1		1	FAM188B	7	30931622	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	16540	30931622	128207041	8425	16576											
AQP1	358	broad.mit.edu	37	chr7	30962226	30962226	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcggtcctttggctcCgcggtgatcacacacaactt	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30962226	A	A	30962226	2	1	9	1	0	0	0	0	0	0	0	1	823	639	23	1		1	AQP1	7	30962226	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30604	30962226	128176437	8426	16577											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31126584	31126584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgtgtgtgtgacagtgtGggctacgctgagactctact	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31126584	T	T	31126584	3	4	9	1	0	0	0	0	1	0	0	0	303	1357	47	2	889	2	ADCYAP1R1	7	31126584	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	164358	31126584	128012079	8427	16578											
NEUROD6	63974	broad.mit.edu	37	chr7	31378296	31378296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccttgtgtggtgtgcaGcctccccaccctgacccatc	10	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31378296	T	T	31378296	3	4	9	1	0	0	0	0	1	0	0	0	10446	971	34	3	430	3	NEUROD6	7	31378296	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	251712	31378296	127760367	8428	16579											
NEUROD6	63974	broad.mit.edu	37	chr7	31378807	31378807	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttaatttgcttctggtcctCgcattctctagaaaactttc	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31378807	A	A	31378807	4	1	9	1	0	0	0	0	0	1	0	0	10446	893	31	3	941	3	NEUROD6	7	31378807	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	511	31378807	127759856	8429	16580											
CCDC129	223075	broad.mit.edu	37	chr7	31692409	31692409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccctttgtcaaattgtcCtgttggagaaaaggatgcag	10	8	1	1	rs34177136	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31692409	A	A	31692409	3	1	9	1	0	0	0	0	1	0	0	0	2790	681	24	2	3151	2	CCDC129	7	31692409	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	313602	31692409	127446254	8430	16581											
C7orf16	10842	broad.mit.edu	37	chr7	31732172	31732172	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gattgtgaatgtcagtggtgGaagtcagagaagaggcgtct	16	4	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31732172	A	A	31732172	1	1	9	0	1	0	0	0	0	0	0	0	2403	1189	41	4		4	C7orf16	7	31732172	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39763	31732172	127406491	8431	16582											
PDE1C	5137	broad.mit.edu	37	chr7	31855612	31855612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtcacttttgtttgccCgtgttccattgacttgattc	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31855612	A	A	31855612	3	1	9	1	0	0	0	0	1	0	0	0	11729	652	23	1	177	1	PDE1C	7	31855612	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123440	31855612	127283051	8432	16583											
PDE1C	5137	broad.mit.edu	37	chr7	31862736	31862736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgattgatgtgcaccacttcCgtccaagtagctttaaagct	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31862736	A	A	31862736	2	1	9	1	0	0	0	0	0	0	0	1	11729	639	23	1		1	PDE1C	7	31862736	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7124	31862736	127275927	8433	16584											
PDE1C	5137	broad.mit.edu	37	chr7	31918658	31918658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaacgatgctcttgaaccGgggcttctcgtcgctcctcc	11	14	2	2	rs143359144		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31918658	T	T	31918658	2	4	9	1	0	0	0	0	0	0	0	1	11729	1115	39	1		1	PDE1C	7	31918658	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55922	31918658	127220005	8434	16585											
PDE1C	5137	broad.mit.edu	37	chr7	32109909	32109909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataggtatacttacagccCgcggagccgaagccagattt	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32109909	A	A	32109909	3	1	9	1	0	0	0	0	1	0	0	0	11729	652	23	1	1875	1	PDE1C	7	32109909	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	191251	32109909	127028754	8435	16586											
AVL9	23080	broad.mit.edu	37	chr7	32582769	32582769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggttgaattctcttaccCgcccctgattccaggagatg	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32582769	A	A	32582769	3	1	9	1	0	0	0	0	1	0	0	0	1233	652	23	1	116	1	AVL9	7	32582769	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	472860	32582769	126555894	8436	16587											
AVL9	23080	broad.mit.edu	37	chr7	32590858	32590858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccaaattaaaaagttgtGgggttctgtttgttttacta	8	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32590858	T	T	32590858	1	4	9	0	1	0	0	0	0	0	0	0	1233	1363	47	2		2	AVL9	7	32590858	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8089	32590858	126547805	8437	16588											
AVL9	23080	broad.mit.edu	37	chr7	32609696	32609696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctccgatgtcaccgttcGggggtttgttgctggagcta	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32609696	T	T	32609696	3	4	9	1	0	0	0	0	1	0	0	0	1233	1116	39	1	1322	1	AVL9	7	32609696	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18838	32609696	126528967	8438	16589											
KBTBD2	25948	broad.mit.edu	37	chr7	32910467	32910467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttttaattaaatattctCgacaacgttgtaacacatct	3	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32910467	A	A	32910467	3	1	9	1	0	0	0	0	1	0	0	0	8063	884	31	3	1513	3	KBTBD2	7	32910467	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	300771	32910467	126228196	8439	16590											
AVL9	23080	broad.mit.edu	37	chr7	32957002	32957002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggaagatttgtgcttcCgttttttcttctttttcttt	6	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32957002	A	A	32957002	1	1	9	0	1	0	0	0	0	0	0	0	1233	667	23	1		1	AVL9	7	32957002	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46535	32957002	126181661	8440	16591											
NT5C3	51251	broad.mit.edu	37	chr7	33057165	33057165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgaaaatatgaacacGgggatgctatgttgttggag	13	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33057165	T	T	33057165	2	4	9	1	0	0	0	0	0	0	0	1	10783	1103	39	1		1	NT5C3	7	33057165	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	100163	33057165	126081498	8441	16592											
RP9	6100	broad.mit.edu	37	chr7	33136943	33136943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggcattctttgtcaccCgttcggtgaccatagcgttt	10	10	2	1	rs148957070	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33136943	A	A	33136943	2	1	9	1	0	0	0	0	0	0	0	1	13646	639	23	1		1	RP9	7	33136943	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79778	33136943	126001720	8442	16593											
BBS9	27241	broad.mit.edu	37	chr7	33282637	33282637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaataattcttgacgttccCaagttatagaatagttggat	7	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33282637	A	A	33282637	1	1	9	0	1	0	0	0	0	0	0	0	1347	609	21	2		2	BBS9	7	33282637	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145694	33282637	125856026	8443	16594											
BBS9	27241	broad.mit.edu	37	chr7	33296970	33296970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcttgcctacagttccCgtacagattccttccttact	5	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33296970	A	A	33296970	3	1	9	1	0	0	0	0	1	0	0	0	1347	652	23	1	583	1	BBS9	7	33296970	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14333	33296970	125841693	8444	16595											
BBS9	27241	broad.mit.edu	37	chr7	33427662	33427662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagagctgtacaatttcGggccattcaacgccggctac	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33427662	T	T	33427662	3	4	9	1	0	0	0	0	1	0	0	0	1347	1116	39	1	2091	1	BBS9	7	33427662	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	130692	33427662	125711001	8445	16596											
SEPT7	989	broad.mit.edu	37	chr7	35872434	35872434	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaccttgaaggctatgtGggatttgccaatctcccaaa	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35872434	T	T	35872434	2	4	9	1	0	0	0	0	0	0	0	1	14182	1335	47	2		2	SEPT7	7	35872434	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2444772	35872434	123266229	8446	16597											
EEPD1	80820	broad.mit.edu	37	chr7	36336699	36336699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttccaccacctgatcccCgcgcacaccttcaccaacat	4	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36336699	A	A	36336699	2	1	9	1	0	0	0	0	0	0	0	1	4972	639	23	1		1	EEPD1	7	36336699	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	464265	36336699	122801964	8447	16598											
KIAA0895	23366	broad.mit.edu	37	chr7	36370596	36370596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcttctactcaccttccCgagagcagtcagcagatgga	10	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36370596	A	A	36370596	3	1	9	1	0	0	0	0	1	0	0	0	8267	652	23	1	171	1	KIAA0895	7	36370596	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33897	36370596	122768067	8448	16599											
ANLN	54443	broad.mit.edu	37	chr7	36462405	36462405	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagattttgtctgcagtacGgttcagaaaccaggtatggt	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36462405	T	T	36462405	2	4	9	1	0	0	0	0	0	0	0	1	694	1103	39	1		1	ANLN	7	36462405	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91809	36462405	122676258	8449	16600											
ANLN	54443	broad.mit.edu	37	chr7	36492213	36492213	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattggaaagccttaaaccGggaaatttccatgctatcta	7	9	1	0	rs115284398	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36492213	T	T	36492213	1	4	9	0	1	0	0	0	0	0	0	0	694	1131	39	1		1	ANLN	7	36492213	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	29808	36492213	122646450	8450	16601											
AOAH	313	broad.mit.edu	37	chr7	36588262	36588262	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcatatataacgatggcGggatagtccaacaccttgtt	10	8	0	0	rs140177976	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36588262	T	T	36588262	2	4	9	1	0	0	0	0	0	0	0	1	728	1103	39	1		1	AOAH	7	36588262	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96049	36588262	122550401	8451	16602											
AOAH	313	broad.mit.edu	37	chr7	36661325	36661325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatagttaccttctacctGggtacactgactcgtcgctg	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36661325	T	T	36661325	3	4	9	1	0	0	0	0	1	0	0	0	728	1348	47	2	1480	2	AOAH	7	36661325	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73063	36661325	122477338	8452	16603											
ELMO1	9844	broad.mit.edu	37	chr7	36895320	36895320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgctcatcatgtccttccCgagtagcgcattcagtccat	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36895320	A	A	36895320	3	1	9	1	0	0	0	0	1	0	0	0	5107	652	23	1	167	1	ELMO1	7	36895320	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	233995	36895320	122243343	8453	16604											
ELMO1	9844	broad.mit.edu	37	chr7	36910049	36910049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgagggcagtcctttccCgtcaccacggctttgatatc	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36910049	A	A	36910049	2	1	9	1	0	0	0	0	0	0	0	1	5107	639	23	1		1	ELMO1	7	36910049	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14729	36910049	122228614	8454	16605											
ELMO1	9844	broad.mit.edu	37	chr7	37298914	37298914	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccagcttggcatccatactCgaggactggattcgttcatg	10	11	1	0	rs142772798	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37298914	A	A	37298914	2	1	9	1	0	0	0	0	0	0	0	1	5107	871	31	3		3	ELMO1	7	37298914	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	388865	37298914	121839749	8455	16606											
ELMO1	9844	broad.mit.edu	37	chr7	37355456	37355456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatattttactatcctactGgaaatatattatttgcttgt	4	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37355456	T	T	37355456	1	4	9	0	1	0	0	0	0	0	0	0	5107	1363	47	2		2	ELMO1	7	37355456	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	56542	37355456	121783207	8456	16607											
ELMO1	9844	broad.mit.edu	37	chr7	37355525	37355525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcctgagtaacacttaccCatcacagacttcctttatta	3	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37355525	A	A	37355525	3	1	9	1	0	0	0	0	1	0	0	0	5107	608	21	2	2145	2	ELMO1	7	37355525	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69	37355525	121783138	8457	16608											
ELMO1	9844	broad.mit.edu	37	chr7	37382196	37382196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaactgaaaatagacaccCaatgctgtcacgttactaac	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37382196	A	A	37382196	1	1	9	0	1	0	0	0	0	0	0	0	5107	609	21	2		2	ELMO1	7	37382196	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26671	37382196	121756467	8458	16609											
GPR141	353345	broad.mit.edu	37	chr7	37780137	37780137	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtgaaaatgaacaccCggtcagtgaccaccatggcg	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37780137	A	A	37780137	2	1	9	1	0	0	0	0	0	0	0	1	6714	643	23	1		1	GPR141	7	37780137	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	397941	37780137	121358526	8459	16610											
GPR141	353345	broad.mit.edu	37	chr7	37780851	37780851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgcttctctttgtctttGggggaagccattggtttaag	11	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37780851	T	T	37780851	3	4	9	1	0	0	0	0	1	0	0	0	6714	1348	47	2	858	2	GPR141	7	37780851	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	714	37780851	121357812	8460	16611											
TXNDC3	51314	broad.mit.edu	37	chr7	37889904	37889904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagaagtccagttacaggtGggtctgacatatcaacaatt	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37889904	T	T	37889904	1	4	9	0	1	0	0	0	0	0	0	0	16924	1363	47	2		2	TXNDC3	7	37889904	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	109053	37889904	121248759	8461	16612											
SFRP4	6424	broad.mit.edu	37	chr7	37947238	37947238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtcctgaactgttctcCgctgttcctgcagcctctct	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37947238	A	A	37947238	3	1	9	1	0	0	0	0	1	0	0	0	14276	652	23	1	160	1	SFRP4	7	37947238	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57334	37947238	121191425	8462	16613											
TARP	445347	broad.mit.edu	37	chr7	38301800	38301800	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttgaacaattgtctttGggatccattgtgatgacatc	8	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38301800	T	T	38301800	2	4	9	1	0	0	0	0	0	0	0	1	15677	1335	47	2		2	TARP	7	38301800	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	354562	38301800	120836863	8463	16614											
TARP	445347	broad.mit.edu	37	chr7	38305165	38305165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtatcttaataacatcaGggaaaaatttctcaagaaga	6	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38305165	T	T	38305165	3	4	9	1	0	0	0	0	1	0	0	0	15677	991	35	2	417	2	TARP	7	38305165	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3365	38305165	120833498	8464	16615											
TARP	445347	broad.mit.edu	37	chr7	38305284	38305284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaagttgtttatctatGgggagaaatgaaatatgagt	11	3	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38305284	T	T	38305284	1	4	9	0	1	0	0	0	0	0	0	0	15677	1363	47	2		2	TARP	7	38305284	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	119	38305284	120833379	8465	16616											
TARP	445347	broad.mit.edu	37	chr7	38313210	38313210	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatgataagctttgttccGggaccaaataccttgatttt	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38313210	T	T	38313210	2	4	9	1	0	0	0	0	0	0	0	1	15677	1131	39	1		1	TARP	7	38313210	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7926	38313210	120825453	8466	16617											
AMPH	273	broad.mit.edu	37	chr7	38424433	38424433	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgccctaatctaagcgtcGggtgaagttctctggaaaga	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38424433	T	T	38424433	2	4	9	1	0	0	0	0	0	0	0	1	588	1124	39	1		1	AMPH	7	38424433	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	111223	38424433	120714230	8467	16618											
AMPH	273	broad.mit.edu	37	chr7	38502707	38502707	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaatgcggagaggaccCgaatcactagaggaacacag	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38502707	A	A	38502707	2	1	9	1	0	0	0	0	0	0	0	1	588	639	23	1		1	AMPH	7	38502707	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	78274	38502707	120635956	8468	16619											
AMPH	273	broad.mit.edu	37	chr7	38530729	38530729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgatggaagtcttccCacagcacatcacatttctaa	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38530729	A	A	38530729	3	1	9	1	0	0	0	0	1	0	0	0	588	595	21	2	1838	2	AMPH	7	38530729	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28022	38530729	120607934	8469	16620											
VPS41	27072	broad.mit.edu	37	chr7	38791758	38791758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatccaaagtgtacaagtcGgggagtctgtgccttacctt	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38791758	T	T	38791758	1	4	9	0	1	0	0	0	0	0	0	0	17337	1131	39	1		1	VPS41	7	38791758	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	261029	38791758	120346905	8470	16621											
VPS41	27072	broad.mit.edu	37	chr7	38869807	38869807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgctgttccgatcacctGgggctggcgccacagaactc	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38869807	T	T	38869807	1	4	9	0	1	0	0	0	0	0	0	0	17337	1363	47	2		2	VPS41	7	38869807	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78049	38869807	120268856	8471	16622											
VPS41	27072	broad.mit.edu	37	chr7	38908883	38908883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcaaagaaaaatgacaccCgtcagagatttatttgtttt	8	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38908883	A	A	38908883	1	1	9	0	1	0	0	0	0	0	0	0	17337	667	23	1		1	VPS41	7	38908883	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39076	38908883	120229780	8472	16623											
POU6F2	11281	broad.mit.edu	37	chr7	39503778	39503778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttctcaattttccccccCagacacaccatcctgagaag	4	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39503778	A	A	39503778	1	1	9	0	1	0	0	0	0	0	0	0	12381	609	21	2		2	POU6F2	7	39503778	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	594895	39503778	119634885	8473	16624											
CDK13	8621	broad.mit.edu	37	chr7	40087487	40087487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagaaaggtaagcatacCttcaaatgaatattgtagat	8	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40087487	A	A	40087487	1	1	9	0	1	0	0	0	0	0	0	0	3159	696	24	2		2	CDK13	7	40087487	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	583709	40087487	119051176	8474	16625											
CDK13	8621	broad.mit.edu	37	chr7	40102462	40102462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaattactttatggtacCgtccacctgaactgctactg	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40102462	A	A	40102462	3	1	9	1	0	0	0	0	1	0	0	0	3159	652	23	1	2668	1	CDK13	7	40102462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14975	40102462	119036201	8475	16626											
CDK13	8621	broad.mit.edu	37	chr7	40102525	40102525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgatgtatggagctgtGggtaagatagccttatttac	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40102525	T	T	40102525	3	4	9	1	0	0	0	0	1	0	0	0	3159	1362	47	2	2731	2	CDK13	7	40102525	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	40102525	119036138	8476	16627											
CDK13	8621	broad.mit.edu	37	chr7	40133873	40133873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaagatctagattatcGgacagaaaaccagcatgtac	10	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40133873	T	T	40133873	3	4	9	1	0	0	0	0	1	0	0	0	3159	1116	39	1	3887	1	CDK13	7	40133873	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31348	40133873	119004790	8477	16628											
CDK13	8621	broad.mit.edu	37	chr7	40134288	40134288	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttacctcaatgctggtccCatgttgtttagtggagacaa	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40134288	A	A	40134288	2	1	9	1	0	0	0	0	0	0	0	1	3159	581	21	2		2	CDK13	7	40134288	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	415	40134288	119004375	8478	16629											
C7orf10	79783	broad.mit.edu	37	chr7	40234623	40234623	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggatatgaagatatagacGagattgctcctcacatcatc	9	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40234623	T	T	40234623	4	4	9	1	0	0	0	0	0	1	0	0	2401	1073	37	3		3	C7orf10	7	40234623	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	100335	40234623	118904040	8479	16630											
C7orf10	79783	broad.mit.edu	37	chr7	40899918	40899918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctcctttggcaggccCagctgtgagatacagtaagt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40899918	A	A	40899918	3	1	9	1	0	0	0	0	1	0	0	0	2401	594	21	2	1203	2	C7orf10	7	40899918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	665295	40899918	118238745	8480	16631											
GLI3	2737	broad.mit.edu	37	chr7	42011897	42011897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacctggctcttttaaatGggcctgctgtgaagtcagaa	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42011897	T	T	42011897	1	4	9	0	1	0	0	0	0	0	0	0	6503	1363	47	2		2	GLI3	7	42011897	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1111979	42011897	117126766	8481	16632											
HECW1	23072	broad.mit.edu	37	chr7	43503386	43503386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagaagccgaatcttccCagtccagcttaggtattgga	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43503386	A	A	43503386	3	1	9	1	0	0	0	0	1	0	0	0	7109	595	21	2	2825	2	HECW1	7	43503386	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1491489	43503386	115635277	8482	16633											
HECW1	23072	broad.mit.edu	37	chr7	43547584	43547584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagcatcctgacttcaGggccactgctcaccacccct	7	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43547584	T	T	43547584	1	4	9	0	1	0	0	0	0	0	0	0	7109	1015	35	2		2	HECW1	7	43547584	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	44198	43547584	115591079	8483	16634											
HECW1	23072	broad.mit.edu	37	chr7	43548527	43548527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaggtccccccacctccGggcacagaatgagcttcctg	9	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43548527	T	T	43548527	1	4	9	0	1	0	0	0	0	0	0	0	7109	1131	39	1		1	HECW1	7	43548527	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	943	43548527	115590136	8484	16635											
STK17A	9263	broad.mit.edu	37	chr7	43659130	43659130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtgaaatatgttttatGggctgcatgttttgtgtact	11	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43659130	T	T	43659130	1	4	9	0	1	0	0	0	0	0	0	0	15408	1363	47	2		2	STK17A	7	43659130	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	110603	43659130	115479533	8485	16636											
C7orf44	55744	broad.mit.edu	37	chr7	43684940	43684940	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagagcttcctgtgcctcGggatggctctgcagctgctc	12	15	1	1	rs147938249		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43684940	T	T	43684940	2	4	9	1	0	0	0	0	0	0	0	1	2419	1103	39	1		1	C7orf44	7	43684940	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25810	43684940	115453723	8486	16637											
BLVRA	644	broad.mit.edu	37	chr7	43806940	43806940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcagcctcctaagttcGgaaaagaaagctcattagca	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43806940	T	T	43806940	1	4	9	0	1	0	0	0	0	0	0	0	1457	1131	39	1		1	BLVRA	7	43806940	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	122000	43806940	115331723	8487	16638											
URGCP	55665	broad.mit.edu	37	chr7	43921521	43921521	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctacctccataacggaactCgcaatcatctccttccattt	3	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43921521	A	A	43921521	4	1	9	1	0	0	0	0	0	1	0	0	17152	893	31	3	2659	3	URGCP	7	43921521	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114581	43921521	115217142	8488	16639											
SPDYE1	285955	broad.mit.edu	37	chr7	44046777	44046777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtcctgagctaggaacGgtcccttaccttcctctctg	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44046777	T	T	44046777	1	4	9	0	1	0	0	0	0	0	0	0	15145	1131	39	1		1	SPDYE1	7	44046777	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	125256	44046777	115091886	8489	16640											
DBNL	28988	broad.mit.edu	37	chr7	44096287	44096287	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtagtggcccgtgctgtatgGactgacaggagtttggccca	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44096287	A	A	44096287	1	1	9	0	1	0	0	0	0	0	0	0	4288	1189	41	4		4	DBNL	7	44096287	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49510	44096287	115042376	8490	16641											
PGAM2	5224	broad.mit.edu	37	chr7	44104755	44104755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggtgcttctcgtccatcGggggcggcgggatgtcgaag	19	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44104755	T	T	44104755	3	4	9	1	0	0	0	0	1	0	0	0	11869	1116	39	1	399	1	PGAM2	7	44104755	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8468	44104755	115033908	8491	16642											
POLM	27434	broad.mit.edu	37	chr7	44113658	44113658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcgtggctgagaccatcCggtggtgtggagagagcagg	20	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44113658	A	A	44113658	1	1	9	0	1	0	0	0	0	0	0	0	12301	667	23	1		1	POLM	7	44113658	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8903	44113658	115025005	8492	16643											
POLM	27434	broad.mit.edu	37	chr7	44116210	44116210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtcttcacaccgacccCgaagatctgggtgaagagct	11	12	3	3	rs142658845	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44116210	A	A	44116210	3	1	9	1	0	0	0	0	1	0	0	0	12301	652	23	1	775	1	POLM	7	44116210	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2552	44116210	115022453	8493	16644											
GCK	2645	broad.mit.edu	37	chr7	44187260	44187260	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccttacagctgctgaccGgggtttgcagagctctcgtc	11	13	1	2	rs145323719		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44187260	T	T	44187260	2	4	9	1	0	0	0	0	0	0	0	1	6355	1103	39	1		1	GCK	7	44187260	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	71050	44187260	114951403	8494	16645											
YKT6	10652	broad.mit.edu	37	chr7	44251789	44251789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccacgcctgccaggattGgggcttcccttacttcgtca	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44251789	T	T	44251789	1	4	9	0	1	0	0	0	0	0	0	0	17612	1363	47	2		2	YKT6	7	44251789	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	64529	44251789	114886874	8495	16646											
NUDCD3	23386	broad.mit.edu	37	chr7	44507645	44507645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggttcgtagaagattcaaGggccagatcttgatgcccaa	12	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44507645	T	T	44507645	1	4	9	0	1	0	0	0	0	0	0	0	10819	1015	35	2		2	NUDCD3	7	44507645	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	255856	44507645	114631018	8496	16647											
NPC1L1	29881	broad.mit.edu	37	chr7	44556884	44556884	+	Missense_Mutation	SNP	C	A	A													tgatgttggctgccagctctCgagctgcccgcagagcttct					rs113685882		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44556884	A	A	44556884	3	1	9	1	0	0	0	0	1	0	0	0	10666	884	31	3	809	3	NPC1L1	7	44556884	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49239	44556884	114581779	8497	16648	107	2									
NPC1L1	29881	broad.mit.edu	37	chr7	44556893	44556893	+	Missense_Mutation	SNP	C	A	A													ctgccagctctcgagctgccCgcagagcttctgtgtaatcc					rs115395682	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44556893	A	A	44556893	3	1	9	1	0	0	0	0	1	0	0	0	10666	652	23	1	818	1	NPC1L1	7	44556893	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	44556893	114581770	8498	16649	107	2									
NPC1L1	29881	broad.mit.edu	37	chr7	44571767	44571767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctctccctggccaggcGggggcagctcctggggcttg	16	16	1	0	rs151211428		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44571767	T	T	44571767	3	4	9	1	0	0	0	0	1	0	0	0	10666	1116	39	1	1668	1	NPC1L1	7	44571767	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14874	44571767	114566896	8499	16650											
NPC1L1	29881	broad.mit.edu	37	chr7	44578824	44578824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggaaagctttctcactcCgggcttggctgttgggggcc	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44578824	A	A	44578824	3	1	9	1	0	0	0	0	1	0	0	0	10666	652	23	1	2983	1	NPC1L1	7	44578824	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7057	44578824	114559839	8500	16651											
DDX56	54606	broad.mit.edu	37	chr7	44610381	44610381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctttgggccctcggcccCgacgcttgcccttgactggg	12	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44610381	A	A	44610381	3	1	9	1	0	0	0	0	1	0	0	0	4407	652	23	1	689	1	DDX56	7	44610381	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31557	44610381	114528282	8501	16652											
OGDH	4967	broad.mit.edu	37	chr7	44714002	44714002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaaggtggcttggttccCtgtccaggtttgaggagttc	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44714002	A	A	44714002	1	1	9	0	1	0	0	0	0	0	0	0	10934	696	24	2		2	OGDH	7	44714002	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103621	44714002	114424661	8502	16653											
OGDH	4967	broad.mit.edu	37	chr7	44715688	44715688	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttgaggccgctgacccCgtggtgatgggcaagaccaa	13	13	0	4	rs138707524		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44715688	A	A	44715688	2	1	9	1	0	0	0	0	0	0	0	1	10934	639	23	1		1	OGDH	7	44715688	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1686	44715688	114422975	8503	16654											
OGDH	4967	broad.mit.edu	37	chr7	44721297	44721297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagaacattctggatttgGggtctcctttggtgtttaca	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44721297	T	T	44721297	1	4	9	0	1	0	0	0	0	0	0	0	10934	1247	43	2		2	OGDH	7	44721297	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5609	44721297	114417366	8504	16655											
OGDH	4967	broad.mit.edu	37	chr7	44721423	44721423	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctacacaactcatggcacCgtgcacgtggtcgtcaacaa	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44721423	A	A	44721423	2	1	9	1	0	0	0	0	0	0	0	1	10934	639	23	1		1	OGDH	7	44721423	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	126	44721423	114417240	8505	16656											
ZMIZ2	83637	broad.mit.edu	37	chr7	44796148	44796148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagccaggtaagcaccCactggtgccccacccccgag	10	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44796148	A	A	44796148	1	1	9	0	1	0	0	0	0	0	0	0	17823	609	21	2		2	ZMIZ2	7	44796148	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	74725	44796148	114342515	8506	16657											
H2AFV	94239	broad.mit.edu	37	chr7	44887432	44887432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacatggcgccccccggcGggcggcgaggggctcggccg	21	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44887432	T	T	44887432	1	4	9	0	1	0	0	0	0	0	0	0	6992	1131	39	1		1	H2AFV	7	44887432	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	91284	44887432	114251231	8507	16658											
PURB	5814	broad.mit.edu	37	chr7	44924224	44924224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcactcgcagaaacacccCgtatttgttgcagcccacat	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44924224	A	A	44924224	3	1	9	1	0	0	0	0	1	0	0	0	12936	652	23	1	218	1	PURB	7	44924224	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36792	44924224	114214439	8508	16659											
MYO1G	64005	broad.mit.edu	37	chr7	45006299	45006299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcgagagtagggctggcGggaagcgaagccagccctgc	17	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45006299	T	T	45006299	3	4	9	1	0	0	0	0	1	0	0	0	10168	1116	39	1	1167	1	MYO1G	7	45006299	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82075	45006299	114132364	8509	16660											
MYO1G	64005	broad.mit.edu	37	chr7	45014822	45014822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtgctgcttgaggaccCgagactgaggagagaggggc	17	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45014822	A	A	45014822	3	1	9	1	0	0	0	0	1	0	0	0	10168	652	23	1	2559	1	MYO1G	7	45014822	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8523	45014822	114123841	8510	16661											
MYO1G	64005	broad.mit.edu	37	chr7	45014852	45014852	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagagaggggcagatggactCaggcctgggaaggagtctga	19	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45014852	A	A	45014852	1	1	9	0	1	0	0	0	0	0	0	0	10168	841	29	3		3	MYO1G	7	45014852	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	45014852	114123811	8511	16662											
ADCY1	107	broad.mit.edu	37	chr7	45724656	45724656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaatctactcagtagccCaaggttgtgtggtgagcatc	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45724656	A	A	45724656	3	1	9	1	0	0	0	0	1	0	0	0	292	595	21	2	2108	2	ADCY1	7	45724656	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	709804	45724656	113414007	8512	16663											
ADCY1	107	broad.mit.edu	37	chr7	45725759	45725759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaatgatcctgctctccGggctcaccacgtcctacatc	6	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45725759	T	T	45725759	3	4	9	1	0	0	0	0	1	0	0	0	292	1116	39	1	2322	1	ADCY1	7	45725759	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1103	45725759	113412904	8513	16664											
IGFBP3	3486	broad.mit.edu	37	chr7	45956825	45956825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcacatattctgtctccCgcttggactcggaggagaag	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45956825	A	A	45956825	3	1	9	1	0	0	0	0	1	0	0	0	7650	652	23	1	270	1	IGFBP3	7	45956825	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	231066	45956825	113181838	8514	16665											
TNS3	64759	broad.mit.edu	37	chr7	47333375	47333375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaaccgcactcccttcGgggtacactcgatcaaaaag	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47333375	T	T	47333375	3	4	9	1	0	0	0	0	1	0	0	0	16467	1116	39	1	637	1	TNS3	7	47333375	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1376550	47333375	111805288	8515	16666											
C7orf65	401335	broad.mit.edu	37	chr7	47698472	47698472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagggtattgagtggttcGggatttactaaaacccctct	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47698472	T	T	47698472	1	4	9	0	1	0	0	0	0	0	0	0	2436	1131	39	1		1	C7orf65	7	47698472	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	365097	47698472	111440191	8516	16667											
PKD1L1	168507	broad.mit.edu	37	chr7	47814707	47814707	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgggttaagcaaaacaGggtccatagtgcctatgcaa	13	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47814707	T	T	47814707	1	4	9	0	1	0	0	0	0	0	0	0	12059	1015	35	2		2	PKD1L1	7	47814707	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	116235	47814707	111323956	8517	16668											
PKD1L1	168507	broad.mit.edu	37	chr7	47894600	47894600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggagattcactttatccCgaagtaatacaaatgtcgtt	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47894600	A	A	47894600	3	1	9	1	0	0	0	0	1	0	0	0	12059	652	23	1	3922	1	PKD1L1	7	47894600	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79893	47894600	111244063	8518	16669											
PKD1L1	168507	broad.mit.edu	37	chr7	47979830	47979830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgggctctgtgattccCggtcttctgcctttccattc	10	12	3	1	rs150237624	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47979830	A	A	47979830	3	1	9	1	0	0	0	0	1	0	0	0	12059	652	23	1	8524	1	PKD1L1	7	47979830	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85230	47979830	111158833	8519	16670											
SUN3	256979	broad.mit.edu	37	chr7	48026894	48026894	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcattcttgaatattctGgacatgtggcatggccttct	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48026894	T	T	48026894	1	4	9	0	1	0	0	0	0	0	0	0	15511	1363	47	2		2	SUN3	7	48026894	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	47064	48026894	111111769	8520	16671											
SUN3	256979	broad.mit.edu	37	chr7	48026985	48026985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatataaacaagtatacttcGggtgtccccagttgctaaag	9	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48026985	T	T	48026985	3	4	9	1	0	0	0	0	1	0	0	0	15511	1116	39	1	61	1	SUN3	7	48026985	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	48026985	111111678	8521	16672											
SUN3	256979	broad.mit.edu	37	chr7	48035723	48035723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttataactttctgaggtccCagcttcaatgatggaggctc	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48035723	A	A	48035723	3	1	9	1	0	0	0	0	1	0	0	0	15511	594	21	2	491	2	SUN3	7	48035723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8738	48035723	111102940	8522	16673											
UPP1	7378	broad.mit.edu	37	chr7	48141538	48141538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctgtgcgggaactgacCgctatgccatgtataaagta	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48141538	A	A	48141538	3	1	9	1	0	0	0	0	1	0	0	0	17138	652	23	1	290	1	UPP1	7	48141538	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	105815	48141538	110997125	8523	16674											
UPP1	7378	broad.mit.edu	37	chr7	48146557	48146557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagattgtcctggggaagcGggtcatccggaaaacggacc	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48146557	T	T	48146557	3	4	9	1	0	0	0	0	1	0	0	0	17138	1116	39	1	542	1	UPP1	7	48146557	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5019	48146557	110992106	8524	16675											
ABCA13	154664	broad.mit.edu	37	chr7	48314027	48314027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccagtccaaaagaaaaGgatgtaaacagtgtaggcaa	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48314027	T	T	48314027	3	4	9	1	0	0	0	0	1	0	0	0	31	991	35	2	4659	2	ABCA13	7	48314027	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	167470	48314027	110824636	8525	16676											
ABCA13	154664	broad.mit.edu	37	chr7	48315040	48315040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttggcataagatattacCgtttgtcccaccttcaataa	5	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48315040	A	A	48315040	3	1	9	1	0	0	0	0	1	0	0	0	31	652	23	1	5672	1	ABCA13	7	48315040	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1013	48315040	110823623	8526	16677											
ABCA13	154664	broad.mit.edu	37	chr7	48318375	48318375	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgaaacttcttaagctGgtcaagaaagtttcggggaa	11	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48318375	T	T	48318375	2	4	9	1	0	0	0	0	0	0	0	1	31	1335	47	2		2	ABCA13	7	48318375	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3335	48318375	110820288	8527	16678											
ABCA13	154664	broad.mit.edu	37	chr7	48318390	48318390	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctggtcaagaaagtttcGgggaagatgtccacagtttt	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48318390	T	T	48318390	2	4	9	1	0	0	0	0	0	0	0	1	31	1103	39	1		1	ABCA13	7	48318390	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	48318390	110820273	8528	16679											
ABCA13	154664	broad.mit.edu	37	chr7	48335440	48335440	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagccgaggctggagacGgtgcagcagcacttgtacat	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48335440	T	T	48335440	2	4	9	1	0	0	0	0	0	0	0	1	31	1103	39	1		1	ABCA13	7	48335440	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17050	48335440	110803223	8529	16680											
ABCA13	154664	broad.mit.edu	37	chr7	48349648	48349648	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaatcttggatcgcagcGgaggaactctgtagcctgcc	12	10	2	0	rs145966622	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48349648	T	T	48349648	2	4	9	1	0	0	0	0	0	0	0	1	31	1103	39	1		1	ABCA13	7	48349648	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14208	48349648	110789015	8530	16681											
ABCA13	154664	broad.mit.edu	37	chr7	48411933	48411933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttctcttggattttGggatgtcagtcgtcatgctg	10	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48411933	T	T	48411933	3	4	9	1	0	0	0	0	1	0	0	0	31	1348	47	2	10931	2	ABCA13	7	48411933	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62285	48411933	110726730	8531	16682											
ABCA13	154664	broad.mit.edu	37	chr7	48411999	48411999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaagctaatacagcggccCtttgtaccagcctggtgtac	10	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48411999	A	A	48411999	3	1	9	1	0	0	0	0	1	0	0	0	31	681	24	2	10997	2	ABCA13	7	48411999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	48411999	110726664	8532	16683											
FIGNL1	63979	broad.mit.edu	37	chr7	50513460	50513460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatgctcaccatctcccCgttgagataacaaggaatca	6	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50513460	A	A	50513460	3	1	9	1	0	0	0	0	1	0	0	0	5949	652	23	1	502	1	FIGNL1	7	50513460	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2101461	50513460	108625203	8533	16684											
FIGNL1	63979	broad.mit.edu	37	chr7	50513930	50513930	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacattgcattcctccattCtgctctcccccatcttgctt	3	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50513930	A	A	50513930	3	1	9	1	0	0	0	0	1	0	0	0	5949	912	32	3	972	3	FIGNL1	7	50513930	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	470	50513930	108624733	8534	16685											
GRB10	2887	broad.mit.edu	37	chr7	50663054	50663054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatacttaccggtcttgtcGgtttataacttgaaaattgc	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50663054	T	T	50663054	1	4	9	0	1	0	0	0	0	0	0	0	6822	1131	39	1		1	GRB10	7	50663054	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	149124	50663054	108475609	8535	16686											
GRB10	2887	broad.mit.edu	37	chr7	50672061	50672061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctacctaggatgttcatcCgtgtgcttcgcttctgcaaa	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50672061	A	A	50672061	3	1	9	1	0	0	0	0	1	0	0	0	6822	652	23	1	397	1	GRB10	7	50672061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9007	50672061	108466602	8536	16687											
GRB10	2887	broad.mit.edu	37	chr7	50694533	50694533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctacctaatcctaggtgcGggtggtgctccactagtgtc	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50694533	T	T	50694533	3	4	9	1	0	0	0	0	1	0	0	0	6822	1116	39	1	1185	1	GRB10	7	50694533	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22472	50694533	108444130	8537	16688											
GRB10	2887	broad.mit.edu	37	chr7	50694568	50694568	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtccagctgttgtcatcCacacagtgacttttgtaaac	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50694568	A	A	50694568	2	1	9	1	0	0	0	0	0	0	0	1	6822	581	21	2		2	GRB10	7	50694568	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	50694568	108444095	8538	16689											
GRB10	2887	broad.mit.edu	37	chr7	50694651	50694651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccactttgcttgtccCatcttcactaaagactttaa	3	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50694651	A	A	50694651	3	1	9	1	0	0	0	0	1	0	0	0	6822	594	21	2	1303	2	GRB10	7	50694651	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	50694651	108444012	8539	16690											
COBL	23242	broad.mit.edu	37	chr7	51097326	51097326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaatcacagatgtttccCacaccaattacttagtgtaa	4	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51097326	A	A	51097326	1	1	9	0	1	0	0	0	0	0	0	0	3685	609	21	2		2	COBL	7	51097326	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	402675	51097326	108041337	8540	16691											
VSTM2A	222008	broad.mit.edu	37	chr7	54610468	54610468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggatttgttttcttttcCgttttatatgtacaacaagg	8	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54610468	A	A	54610468	2	1	9	1	0	0	0	0	0	0	0	1	17356	639	23	1		1	VSTM2A	7	54610468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3513142	54610468	104528195	8541	16692											
EGFR	1956	broad.mit.edu	37	chr7	55220270	55220270	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgcccagcagtgctcCgggcgctgccgtggcaagtc	14	14	1	0	rs45621033	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55220270	A	A	55220270	2	1	9	1	0	0	0	0	0	0	0	1	5007	639	23	1		1	EGFR	7	55220270	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	609802	55220270	103918393	8542	16693											
EGFR	1956	broad.mit.edu	37	chr7	55229273	55229273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggactgcgtctcttgccGgaatgtcagccgaggcaggg	16	11	2	0	rs150477666		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55229273	T	T	55229273	3	4	9	1	0	0	0	0	1	0	0	0	5007	1116	39	1	1641	1	EGFR	7	55229273	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9003	55229273	103909390	8543	16694											
EGFR	1956	broad.mit.edu	37	chr7	55268077	55268077	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaattctccaaaatggccCgagacccccagcgctacctt	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55268077	A	A	55268077	2	1	9	1	0	0	0	0	0	0	0	1	5007	644	23	1		1	EGFR	7	55268077	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38804	55268077	103870586	8544	16695											
EGFR	1956	broad.mit.edu	37	chr7	55273028	55273028	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaatcagcctctgaacccCgcgcccagcagagacccaca	7	19	2	2	rs149995949		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55273028	A	A	55273028	2	1	9	1	0	0	0	0	0	0	0	1	5007	639	23	1		1	EGFR	7	55273028	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4951	55273028	103865635	8545	16696											
LANCL2	55915	broad.mit.edu	37	chr7	55467718	55467718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgagctgctttatggacGggcaggttatctgtatgcct	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55467718	T	T	55467718	3	4	9	1	0	0	0	0	1	0	0	0	8693	1116	39	1	613	1	LANCL2	7	55467718	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	194690	55467718	103670945	8546	16697											
LANCL2	55915	broad.mit.edu	37	chr7	55493031	55493031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgctgcggaagggctacGggatatgccatgggactgct	16	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55493031	T	T	55493031	3	4	9	1	0	0	0	0	1	0	0	0	8693	1116	39	1	1119	1	LANCL2	7	55493031	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25313	55493031	103645632	8547	16698											
LANCL2	55915	broad.mit.edu	37	chr7	55498973	55498973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggaccagagacatcacGgtttccagcatttgaacttg	10	11	1	2	rs140816570		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55498973	T	T	55498973	3	4	9	1	0	0	0	0	1	0	0	0	8693	1116	39	1	1347	1	LANCL2	7	55498973	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5942	55498973	103639690	8548	16699											
ZNF713	349075	broad.mit.edu	37	chr7	56007337	56007337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatgtgggaaagccttcCgtcagcattcatcctttact	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56007337	A	A	56007337	3	1	9	1	0	0	0	0	1	0	0	0	18245	652	23	1	945	1	ZNF713	7	56007337	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	508364	56007337	103131326	8549	16700											
MRPS17	51373	broad.mit.edu	37	chr7	56020894	56020894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaaagccacgtaatgtcCgtagttcgctcatccgtcca	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020894	A	A	56020894	2	1	9	1	0	0	0	0	0	0	0	1	9921	639	23	1		1	MRPS17	7	56020894	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13557	56020894	103117769	8550	16701											
MRPS17	51373	broad.mit.edu	37	chr7	56020909	56020909	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtccgtagttcgctcatcCgtccatgccagatggattgt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020909	A	A	56020909	2	1	9	1	0	0	0	0	0	0	0	1	9921	639	23	1		1	MRPS17	7	56020909	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	56020909	103117754	8551	16702											
SUMF2	25870	broad.mit.edu	37	chr7	56142370	56142370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcctactgtgcttggcGgggaaaacgactgcccacgg	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56142370	T	T	56142370	3	4	9	1	0	0	0	0	1	0	0	0	15504	1116	39	1	551	1	SUMF2	7	56142370	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121461	56142370	102996293	8552	16703											
ZNF679	168417	broad.mit.edu	37	chr7	63721344	63721344	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagcggatgacacagatgaGaggtgcaaaagtcaaggagg	16	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63721344	C	C	63721344	1	2	9	0	1	0	0	0	0	0	0	0	18213	957	33	4		4	ZNF679	7	63721344	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7578974	63721344	95417319	8553	16704											
ZNF680	340252	broad.mit.edu	37	chr7	64004647	64004647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagaaataaaacctttaGggcatattaggaattgtgtg	10	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64004647	T	T	64004647	1	4	9	0	1	0	0	0	0	0	0	0	18214	1015	35	2		2	ZNF680	7	64004647	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	283303	64004647	95134016	8554	16705											
ZNF117	51351	broad.mit.edu	37	chr7	64441805	64441805	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtctcttcatattccaGggctcttttccttgctccag	6	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64441805	T	T	64441805	1	4	9	1	0	0	0	0	0	0	0	0	17843	1015	35	2		2	ZNF117	7	64441805	Translation_Start_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	437158	64441805	94696858	8555	16706											
ZNF117	51351	broad.mit.edu	37	chr7	64452749	64452749	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgactcgtgcccctagcGgtgcttttaaacctgttgtc	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64452749	T	T	64452749	1	4	9	0	1	0	0	0	0	0	0	0	17843	1116	39	1		1	ZNF117	7	64452749	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	10944	64452749	94685914	8556	16707											
ZNF92	168374	broad.mit.edu	37	chr7	64853683	64853683	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttggtaattggagaatatGagcaagatttatgttattta	10	1	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64853683	T	T	64853683	1	4	9	0	1	0	0	0	0	0	0	0	18330	1305	45	3		3	ZNF92	7	64853683	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	400934	64853683	94284980	8557	16708											
GUSB	2990	broad.mit.edu	37	chr7	65426034	65426034	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagatcccctttttattcccCagcactctcgtcggtgctac	6	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65426034	G	G	65426034	2	3	9	1	0	0	0	0	0	0	0	1	6967	581	21	4		4	GUSB	7	65426034	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	572351	65426034	93712629	8558	16709											
CRCP	27297	broad.mit.edu	37	chr7	65579989	65579989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcgcgtcccttttcgccCgaggagcccaacggtttgac	13	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65579989	A	A	65579989	1	1	9	0	1	0	0	0	0	0	0	0	3884	667	23	1		1	CRCP	7	65579989	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	153955	65579989	93558674	8559	16710											
TPST1	8460	broad.mit.edu	37	chr7	65817444	65817444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacatgtcctgcaatgatGgggactggacctgttgcctt	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65817444	T	T	65817444	1	4	9	0	1	0	0	0	0	0	0	0	16551	1363	47	2		2	TPST1	7	65817444	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	237455	65817444	93321219	8560	16711											
C7orf42	55069	broad.mit.edu	37	chr7	66410182	66410182	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacccactgaaacccttcGgagggtattcccgcaacgtc	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66410182	T	T	66410182	4	4	9	1	0	0	0	0	0	1	0	0	2417	1117	39	1	385	1	C7orf42	7	66410182	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	592738	66410182	92728481	8561	16712											
C7orf42	55069	broad.mit.edu	37	chr7	66418350	66418350	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaatcctgaattttgtccCgagaaggtgagcggtggatg	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66418350	A	A	66418350	2	1	9	1	0	0	0	0	0	0	0	1	2417	639	23	1		1	C7orf42	7	66418350	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8168	66418350	92720313	8562	16713											
C7orf42	55069	broad.mit.edu	37	chr7	66420429	66420429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcctggtctttgggtaGgggctgagttacctaggctt	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66420429	T	T	66420429	1	4	9	0	1	0	0	0	0	0	0	0	2417	1015	35	2		2	C7orf42	7	66420429	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2079	66420429	92718234	8563	16714											
SBDS	51119	broad.mit.edu	37	chr7	66459196	66459196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctatgctgcagctgttaccCacctgcttacagatttcagt	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66459196	A	A	66459196	1	1	9	0	1	0	0	0	0	0	0	0	13969	609	21	2		2	SBDS	7	66459196	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38767	66459196	92679467	8564	16715											
TYW1	55253	broad.mit.edu	37	chr7	66532351	66532351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgcatggaaaccacccCgagcttggcgtgtgctaata	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66532351	A	A	66532351	3	1	9	1	0	0	0	0	1	0	0	0	16944	652	23	1	1273	1	TYW1	7	66532351	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73155	66532351	92606312	8565	16716											
STAG3L4	64940	broad.mit.edu	37	chr7	66773576	66773576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttaggcactgtgagccCtgagatgttcaagaagatgt	11	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66773576	A	A	66773576	1	1	9	0	1	0	0	0	0	0	0	0	15365	696	24	2		2	STAG3L4	7	66773576	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	241225	66773576	92365087	8566	16717											
STAG3L4	64940	broad.mit.edu	37	chr7	66774013	66774013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggacattggtctgtcGgtgccagtacatcctcctcc	12	12	1	0	rs79379297		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66774013	T	T	66774013	3	4	9	1	0	0	0	0	1	0	0	0	15365	1116	39	1	185	1	STAG3L4	7	66774013	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	437	66774013	92364650	8567	16718											
AUTS2	26053	broad.mit.edu	37	chr7	70236564	70236564	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatcctcctgcagtgtcGggcatcccccctatgatccc	7	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70236564	T	T	70236564	2	4	9	1	0	0	0	0	0	0	0	1	1230	1103	39	1		1	AUTS2	7	70236564	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3462551	70236564	88902099	8568	16719											
WBSCR17	64409	broad.mit.edu	37	chr7	70885852	70885852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgggaggtgtgcctcacGggagagaagagaggtttcat	16	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70885852	T	T	70885852	1	4	9	0	1	0	0	0	0	0	0	0	17391	1131	39	1		1	WBSCR17	7	70885852	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	649288	70885852	88252811	8569	16720											
WBSCR17	64409	broad.mit.edu	37	chr7	70885913	70885913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgagccggttctatccCgcatccaggaaaaccggaag	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70885913	A	A	70885913	3	1	9	1	0	0	0	0	1	0	0	0	17391	652	23	1	802	1	WBSCR17	7	70885913	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	70885913	88252750	8570	16721											
STAG3L3	442578	broad.mit.edu	37	chr7	72470020	72470020	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagtatcagtaatctgacGgcctccactgccacactgta	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72470020	T	T	72470020	2	4	9	1	0	0	0	0	0	0	0	1	15364	1103	39	1		1	STAG3L3	7	72470020	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1584107	72470020	86668643	8571	16722											
FKBP6	8468	broad.mit.edu	37	chr7	72710812	72710812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacccaacctcctaccccCgctgggtttatcacagtcag	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72710812	A	A	72710812	1	1	9	0	1	0	0	0	0	0	0	0	5969	667	23	1		1	FKBP6	7	72710812	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	240792	72710812	86427851	8572	16723											
NSUN5	55695	broad.mit.edu	37	chr7	72722394	72722394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacaaagcgctgaccgtcGgggttcacttccccgtccct	10	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72722394	T	T	72722394	1	4	9	0	1	0	0	0	0	0	0	0	10776	1131	39	1		1	NSUN5	7	72722394	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11582	72722394	86416269	8573	16724											
FKBP6	8468	broad.mit.edu	37	chr7	72743372	72743372	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctatcctagtgaaatactCgggatacctggaacacatgg	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72743372	A	A	72743372	4	1	9	1	0	0	0	0	0	1	0	0	5969	893	31	3	241	3	FKBP6	7	72743372	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20978	72743372	86395291	8574	16725											
FKBP6	8468	broad.mit.edu	37	chr7	72755305	72755305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgagtatcaaaaggccCgggattttctagttcgagcc	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72755305	A	A	72755305	2	1	9	1	0	0	0	0	0	0	0	1	5969	643	23	1		1	FKBP6	7	72755305	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11933	72755305	86383358	8575	16726											
FZD9	8326	broad.mit.edu	37	chr7	72849054	72849054	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctggatggccgtgtggtcGgcgctgtgcttcttctccac	14	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72849054	T	T	72849054	2	4	9	1	0	0	0	0	0	0	0	1	6197	1103	39	1		1	FZD9	7	72849054	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	93749	72849054	86289609	8576	16727											
FZD9	8326	broad.mit.edu	37	chr7	72850131	72850131	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccacacaggcctggcgcGgggtggctgctgccccctcc	14	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72850131	T	T	72850131	1	4	9	0	1	0	0	0	0	0	0	0	6197	1131	39	1		1	FZD9	7	72850131	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1077	72850131	86288532	8577	16728											
BAZ1B	9031	broad.mit.edu	37	chr7	72877254	72877254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcttatattcctacccGggcttcaaattctgatgttt	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72877254	T	T	72877254	2	4	9	1	0	0	0	0	0	0	0	1	1335	1115	39	1		1	BAZ1B	7	72877254	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27123	72877254	86261409	8578	16729											
BAZ1B	9031	broad.mit.edu	37	chr7	72892519	72892519	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcttcagtccttttttGggagatttggaattccctgt	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72892519	T	T	72892519	2	4	9	1	0	0	0	0	0	0	0	1	1335	1335	47	2		2	BAZ1B	7	72892519	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15265	72892519	86246144	8579	16730											
BAZ1B	9031	broad.mit.edu	37	chr7	72925141	72925141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagtactcttgcacgtcCaaatgcgctcactgtacctt	6	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72925141	A	A	72925141	3	1	9	1	0	0	0	0	1	0	0	0	1335	595	21	2	4374	2	BAZ1B	7	72925141	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32622	72925141	86213522	8580	16731											
BCL7B	9275	broad.mit.edu	37	chr7	72966572	72966572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcacccacttcttctcCctaaaagaaagacacttctt	3	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72966572	A	A	72966572	3	1	9	1	0	0	0	0	1	0	0	0	1384	637	22	2	535	2	BCL7B	7	72966572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41431	72966572	86172091	8581	16732											
TBL2	26608	broad.mit.edu	37	chr7	72985264	72985264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtattccacatctgtgtccCacagtttccatgtaccatcc	5	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72985264	A	A	72985264	3	1	9	1	0	0	0	0	1	0	0	0	15764	595	21	2	430	2	TBL2	7	72985264	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18692	72985264	86153399	8582	16733											
TBL2	26608	broad.mit.edu	37	chr7	72988806	72988806	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctgcttcttggatccCgaagatttgtcaggtggaaa	11	7	3	1	rs113406435		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72988806	A	A	72988806	2	1	9	1	0	0	0	0	0	0	0	1	15764	639	23	1		1	TBL2	7	72988806	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3542	72988806	86149857	8583	16734											
WBSCR22	114049	broad.mit.edu	37	chr7	73098118	73098118	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgacgagacagaagccCggaaatacgttcgcaagtga	11	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73098118	A	A	73098118	2	1	9	1	0	0	0	0	0	0	0	1	17392	643	23	1		1	WBSCR22	7	73098118	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	109312	73098118	86040545	8584	16735											
WBSCR22	114049	broad.mit.edu	37	chr7	73101041	73101041	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgccagagaataagccCtgttacctgctggatattgg	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73101041	A	A	73101041	2	1	9	1	0	0	0	0	0	0	0	1	17392	668	24	2		2	WBSCR22	7	73101041	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2923	73101041	86037622	8585	16736											
WBSCR28	135886	broad.mit.edu	37	chr7	73279335	73279336	+	Missense_Mutation	DNP	CG	AT	AT													ttctgcagttggttcagaacCgagatcacctctataatttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	73279336	AT	AT	73279335	3	1	9	1	0	0	0	0	1	0	0	0	17394	644	23	1	91	1	WBSCR28	7	73279335	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	178294	73279335	85859328	8586	16737											
ELN	2006	broad.mit.edu	37	chr7	73450850	73450850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgcctggcagaagtacCgatgatctctctttctcttt	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73450850	A	A	73450850	1	1	9	0	1	0	0	0	0	0	0	0	5113	667	23	1		1	ELN	7	73450850	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	171515	73450850	85687813	8587	16738											
ELN	2006	broad.mit.edu	37	chr7	73470642	73470642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggcattcctacttacGgggttggagctgggggcttt	16	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73470642	T	T	73470642	3	4	9	1	0	0	0	0	1	0	0	0	5113	1116	39	1	1285	1	ELN	7	73470642	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19792	73470642	85668021	8588	16739											
ELN	2006	broad.mit.edu	37	chr7	73470665	73470665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggagctgggggctttccCggctttggtgtcggagtcgg	19	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73470665	A	A	73470665	2	1	9	1	0	0	0	0	0	0	0	1	5113	639	23	1		1	ELN	7	73470665	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	73470665	85667998	8589	16740											
CLIP2	7461	broad.mit.edu	37	chr7	73732069	73732069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcttctggaagagcccCaggagcacaggccactctgt	12	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73732069	A	A	73732069	1	1	9	0	1	0	0	0	0	0	0	0	3565	609	21	2		2	CLIP2	7	73732069	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	261404	73732069	85406594	8590	16741											
CLIP2	7461	broad.mit.edu	37	chr7	73770719	73770719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggccgtgacagcagcttGggtctctcctgcttccacag	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73770719	T	T	73770719	1	4	9	0	1	0	0	0	0	0	0	0	3565	1363	47	2		2	CLIP2	7	73770719	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38650	73770719	85367944	8591	16742											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73961365	73961365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccccccgacacaggcacGggacacaggggttgaggctc	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73961365	T	T	73961365	1	4	9	0	1	0	0	0	0	0	0	0	6933	1131	39	1		1	GTF2IRD1	7	73961365	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	190646	73961365	85177298	8592	16743											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73961458	73961458	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattggcatctcggagccCgtcaaggtgccgtactccaa	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73961458	A	A	73961458	2	1	9	1	0	0	0	0	0	0	0	1	6933	639	23	1		1	GTF2IRD1	7	73961458	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	73961458	85177205	8593	16744											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73961545	73961545	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatctccctccgcaggccCaactgcttcgggatcgccaa	10	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73961545	A	A	73961545	2	1	9	1	0	0	0	0	0	0	0	1	6933	581	21	2		2	GTF2IRD1	7	73961545	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	73961545	85177118	8594	16745											
GTF2IRD1	9569	broad.mit.edu	37	chr7	74009454	74009454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttgaaaaaaggtagaccCgggcgcagtggctcatgcct	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74009454	A	A	74009454	1	1	9	0	1	0	0	0	0	0	0	0	6933	667	23	1		1	GTF2IRD1	7	74009454	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47909	74009454	85129209	8595	16746											
GTF2IRD1	9569	broad.mit.edu	37	chr7	74016709	74016709	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaatggccaatgtacatGgtggactatgccggcctgaa	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74016709	T	T	74016709	3	4	9	1	0	0	0	0	1	0	0	0	6933	1348	47	2	2931	2	GTF2IRD1	7	74016709	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7255	74016709	85121954	8596	16747											
GTF2I	2969	broad.mit.edu	37	chr7	74113354	74113354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctacaacccaggcaaatcGgatgagtgtagatgctgtag	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74113354	T	T	74113354	3	4	9	1	0	0	0	0	1	0	0	0	6932	1116	39	1	312	1	GTF2I	7	74113354	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96645	74113354	85025309	8597	16748											
GTF2IRD2	84163	broad.mit.edu	37	chr7	74211801	74211801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactgtggttcagtccccGggagcatatccagttcacgg	11	13	3	0	rs148277837		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74211801	T	T	74211801	2	4	9	1	0	0	0	0	0	0	0	1	6934	1115	39	1		1	GTF2IRD2	7	74211801	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	98447	74211801	84926862	8598	16749											
STAG3L2	442582	broad.mit.edu	37	chr7	74301217	74301217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagctttgcatccaacaccCaatttcctcaatgcagatag	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74301217	A	A	74301217	3	1	9	1	0	0	0	0	1	0	0	0	15363	594	21	2	332	2	STAG3L2	7	74301217	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89416	74301217	84837446	8599	16750											
POM121C	100101267	broad.mit.edu	37	chr7	75053400	75053400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacagtgggttggtgcttGgggccaggagggaggtgggt	21	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75053400	T	T	75053400	3	4	9	1	0	0	0	0	1	0	0	0	12335	1348	47	2	1999	2	POM121C	7	75053400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	752183	75053400	84085263	8600	16751											
POM121C	100101267	broad.mit.edu	37	chr7	75070197	75070197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccataggggtccaagcGggaaactggcttagtactct	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75070197	T	T	75070197	1	4	9	0	1	0	0	0	0	0	0	0	12335	1131	39	1		1	POM121C	7	75070197	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16797	75070197	84068466	8601	16752											
POM121C	100101267	broad.mit.edu	37	chr7	75070219	75070219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactggcttagtactctcCtgagcctgttaccttctttt	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75070219	A	A	75070219	1	1	9	0	1	0	0	0	0	0	0	0	12335	696	24	2		2	POM121C	7	75070219	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	75070219	84068444	8602	16753											
POM121C	100101267	broad.mit.edu	37	chr7	75104001	75104001	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatggaaattcacctccCgttatccacagctcctctcc	5	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75104001	A	A	75104001	1	1	9	0	1	0	0	0	0	0	0	0	12335	667	23	1		1	POM121C	7	75104001	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	33782	75104001	84034662	8603	16754											
HIP1	3092	broad.mit.edu	37	chr7	75167546	75167546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggagatgcctctgttcCtaaaagacaatgataattta	9	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75167546	A	A	75167546	1	1	9	0	1	0	0	0	0	0	0	0	7181	695	24	2		2	HIP1	7	75167546	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	63545	75167546	83971117	8604	16755											
HIP1	3092	broad.mit.edu	37	chr7	75168612	75168612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttcccctccctgctgcGggttagtgcccatccttgga	10	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75168612	T	T	75168612	1	4	9	0	1	0	0	0	0	0	0	0	7181	1131	39	1		1	HIP1	7	75168612	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1066	75168612	83970051	8605	16756											
HIP1	3092	broad.mit.edu	37	chr7	75168690	75168690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctcgtagtgctttttcCgaagctctcccagtttttga	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75168690	A	A	75168690	3	1	9	1	0	0	0	0	1	0	0	0	7181	652	23	1	107	1	HIP1	7	75168690	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	75168690	83969973	8606	16757											
HIP1	3092	broad.mit.edu	37	chr7	75172241	75172241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcctggttcactcccCgagaggcctgctgcagctgg	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75172241	A	A	75172241	3	1	9	1	0	0	0	0	1	0	0	0	7181	652	23	1	310	1	HIP1	7	75172241	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3551	75172241	83966422	8607	16758											
HIP1	3092	broad.mit.edu	37	chr7	75177093	75177093	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcctgtgtctcctgctcGggatttgctgagcatctcct	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75177093	T	T	75177093	2	4	9	1	0	0	0	0	0	0	0	1	7181	1124	39	1		1	HIP1	7	75177093	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4852	75177093	83961570	8608	16759											
HIP1	3092	broad.mit.edu	37	chr7	75186057	75186057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcagaacctgaagctccCgttggcttgtggcaagttcc	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75186057	A	A	75186057	3	1	9	1	0	0	0	0	1	0	0	0	7181	652	23	1	1533	1	HIP1	7	75186057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8964	75186057	83952606	8609	16760											
CCL26	10344	broad.mit.edu	37	chr7	75398992	75398992	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcggggtccaagcgtcctcGgatgaaaattcagctgagtc	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75398992	C	C	75398992	1	2	9	0	1	0	0	0	0	0	0	0	2926	1131	39	4		4	CCL26	7	75398992	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	212935	75398992	83739671	8610	16761											
RHBDD2	57414	broad.mit.edu	37	chr7	75512936	75512936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcttctgtagagtgagtGggaacctgtgttctccccgg	14	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75512936	T	T	75512936	1	4	9	0	1	0	0	0	0	0	0	0	13426	1363	47	2		2	RHBDD2	7	75512936	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	113944	75512936	83625727	8611	16762											
RHBDD2	57414	broad.mit.edu	37	chr7	75513110	75513110	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgatgaggaggatatcCgtgttcaagtacgtctcagg	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75513110	A	A	75513110	2	1	9	1	0	0	0	0	0	0	0	1	13426	639	23	1		1	RHBDD2	7	75513110	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	174	75513110	83625553	8612	16763											
TMEM120A	83862	broad.mit.edu	37	chr7	75617600	75617600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgatgaggatgctctccCggatggtcagggtgcagtag	16	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75617600	A	A	75617600	3	1	9	1	0	0	0	0	1	0	0	0	16156	652	23	1	526	1	TMEM120A	7	75617600	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104490	75617600	83521063	8613	16764											
SRCRB4D	136853	broad.mit.edu	37	chr7	76028122	76028122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggcaagaattctggaaaGgaagtgaagtggatacaggg	16	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76028122	T	T	76028122	1	4	9	0	1	0	0	0	0	0	0	0	15255	1015	35	2		2	SRCRB4D	7	76028122	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	410522	76028122	83110541	8614	16765											
DTX2	113878	broad.mit.edu	37	chr7	76111782	76111782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaacgttccctgtatcttGgggatgctagcagactaacc	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76111782	T	T	76111782	1	4	9	0	1	0	0	0	0	0	0	0	4834	1363	47	2		2	DTX2	7	76111782	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	83660	76111782	83026881	8615	16766											
DTX2	113878	broad.mit.edu	37	chr7	76112322	76112322	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccctcactctccggggccCggtctgcgcccaggctgaac	11	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76112322	A	A	76112322	2	1	9	1	0	0	0	0	0	0	0	1	4834	643	23	1		1	DTX2	7	76112322	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	540	76112322	83026341	8616	16767											
POMZP3	22932	broad.mit.edu	37	chr7	76247636	76247636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttggaagaaaacagaacGgtgttaaagccagacaggtg	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76247636	T	T	76247636	1	4	9	0	1	0	0	0	0	0	0	0	12342	1131	39	1		1	POMZP3	7	76247636	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	135314	76247636	82891027	8617	16768											
FGL2	10875	broad.mit.edu	37	chr7	76828664	76828664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgaagtacattgatctcCtctttggcattctttagctc	6	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76828664	A	A	76828664	3	1	9	1	0	0	0	0	1	0	0	0	5930	680	24	2	880	2	FGL2	7	76828664	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	581028	76828664	82309999	8618	16769											
FGL2	10875	broad.mit.edu	37	chr7	76828745	76828745	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttatcaccaacctctccCggggctcctgtactgggtaa	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76828745	A	A	76828745	2	1	9	1	0	0	0	0	0	0	0	1	5930	639	23	1		1	FGL2	7	76828745	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	76828745	82309918	8619	16770											
PION	54103	broad.mit.edu	37	chr7	77006689	77006689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctgtctcttgggagatGgccagaatttttaatcacct	8	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77006689	T	T	77006689	3	4	9	1	0	0	0	0	1	0	0	0	12029	1348	47	2	2061	2	PION	7	77006689	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	177944	77006689	82131974	8620	16771											
PTPN12	5782	broad.mit.edu	37	chr7	77240178	77240178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtatagttgtttgtttccCtttataaactgctattttat	6	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77240178	A	A	77240178	1	1	9	0	1	0	0	0	0	0	0	0	12887	696	24	2		2	PTPN12	7	77240178	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	233489	77240178	81898485	8621	16772											
PTPN12	5782	broad.mit.edu	37	chr7	77247878	77247878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaaaccaccaaggaccCgcaggtattgtatgtcttcg	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77247878	A	A	77247878	3	1	9	1	0	0	0	0	1	0	0	0	12887	652	23	1	1067	1	PTPN12	7	77247878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7700	77247878	81890785	8622	16773											
RSBN1L	222194	broad.mit.edu	37	chr7	77378834	77378834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaaagagaatgaaaaacGgaagcgtccgaaaatgtata	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77378834	T	T	77378834	3	4	9	1	0	0	0	0	1	0	0	0	13808	1116	39	1	807	1	RSBN1L	7	77378834	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	130956	77378834	81759829	8623	16774											
PHTF2	57157	broad.mit.edu	37	chr7	77558440	77558440	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggacgcccctaaatcGggtactagttgcagctctcg	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77558440	T	T	77558440	2	4	9	1	0	0	0	0	0	0	0	1	11958	1103	39	1		1	PHTF2	7	77558440	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	179606	77558440	81580223	8624	16775											
PHTF2	57157	broad.mit.edu	37	chr7	77569962	77569962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaatgtggctatctctcCgttcctatcttaaggtagaa	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77569962	A	A	77569962	3	1	9	1	0	0	0	0	1	0	0	0	11958	652	23	1	1860	1	PHTF2	7	77569962	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11522	77569962	81568701	8625	16776											
MAGI2	9863	broad.mit.edu	37	chr7	77797281	77797281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttgacctgcccattgcGggctgcgtggtgcatgaggt	17	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77797281	T	T	77797281	3	4	9	1	0	0	0	0	1	0	0	0	9283	1116	39	1	1851	1	MAGI2	7	77797281	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	227319	77797281	81341382	8626	16777											
MAGI2	9863	broad.mit.edu	37	chr7	78150944	78150944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttctgctggcggctttGgggtaccgtagtaattgtct	14	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78150944	T	T	78150944	3	4	9	1	0	0	0	0	1	0	0	0	9283	1348	47	2	3886	2	MAGI2	7	78150944	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	353663	78150944	80987719	8627	16778											
CD36	948	broad.mit.edu	37	chr7	80276090	80276090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaactgtgggctcatcgctGgggctgtcattggtgctgtc	16	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80276090	T	T	80276090	3	4	9	1	0	0	0	0	1	0	0	0	3037	1348	47	2	36	2	CD36	7	80276090	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2125146	80276090	78862573	8628	16779											
CD36	948	broad.mit.edu	37	chr7	80292448	80292448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatttttgagtttggttcCgtaccctgttactaccacag	7	11	0	1	rs143150225	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80292448	A	A	80292448	3	1	9	1	0	0	0	0	1	0	0	0	3037	652	23	1	586	1	CD36	7	80292448	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16358	80292448	78846215	8629	16780											
SEMA3C	10512	broad.mit.edu	37	chr7	80387660	80387660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcaccgtttcccagttgGgtagaatctggaacaggaat	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80387660	T	T	80387660	3	4	9	1	0	0	0	0	1	0	0	0	14139	1232	43	2	641	2	SEMA3C	7	80387660	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95212	80387660	78751003	8630	16781											
SEMA3C	10512	broad.mit.edu	37	chr7	80418628	80418628	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaaatatttacctgttcCgagaaacaggacatggtatc	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80418628	A	A	80418628	4	1	9	1	0	0	0	0	0	1	0	0	14139	661	23	1	935	1	SEMA3C	7	80418628	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30968	80418628	78720035	8631	16782											
SEMA3C	10512	broad.mit.edu	37	chr7	80427488	80427488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgtgggcaaaaggccCattaaacacagtctgtatat	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80427488	A	A	80427488	3	1	9	1	0	0	0	0	1	0	0	0	14139	594	21	2	1236	2	SEMA3C	7	80427488	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8860	80427488	78711175	8632	16783											
SEMA3C	10512	broad.mit.edu	37	chr7	80433359	80433359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggttgataataaaagcacGgagataaaccataatttgaa	8	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80433359	T	T	80433359	1	4	9	0	1	0	0	0	0	0	0	0	14139	1131	39	1		1	SEMA3C	7	80433359	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5871	80433359	78705304	8633	16784											
HGF	3082	broad.mit.edu	37	chr7	81359020	81359020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggtattgacagtgcccCtgtagccttctccttgacct	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81359020	A	A	81359020	3	1	9	1	0	0	0	0	1	0	0	0	7152	681	24	2	1289	2	HGF	7	81359020	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	925661	81359020	77779643	8634	16785											
HGF	3082	broad.mit.edu	37	chr7	81372699	81372699	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattgcacagtactcccagcGggtgtgagggtcaagagtat	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81372699	C	C	81372699	3	2	9	1	0	0	0	0	1	0	0	0	7152	1116	39	4	1411	4	HGF	7	81372699	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13679	81372699	77765964	8635	16786											
HGF	3082	broad.mit.edu	37	chr7	81392050	81392050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatggaagtcctttattcCtagtacatctattagcacat	6	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81392050	A	A	81392050	3	1	9	1	0	0	0	0	1	0	0	0	7152	681	24	2	2047	2	HGF	7	81392050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19351	81392050	77746613	8636	16787											
CACNA2D1	781	broad.mit.edu	37	chr7	81596886	81596886	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaaacattaaacatagcAtaagaattttttaaaaatat	3	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81596886	G	G	81596886	1	3	9	0	1	0	0	0	0	0	0	0	2574	232	8	5		5	CACNA2D1	7	81596886	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	204836	81596886	77541777	8637	16788											
CACNA2D1	781	broad.mit.edu	37	chr7	81599996	81599996	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatttgaacttactctttGggataaactctggtaatccc	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81599996	T	T	81599996	2	4	9	1	0	0	0	0	0	0	0	1	2574	1335	47	2		2	CACNA2D1	7	81599996	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3110	81599996	77538667	8638	16789											
PCLO	27445	broad.mit.edu	37	chr7	82455910	82455910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcagaggcttacctcccCaaggaagtcgttggatgaaa	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82455910	A	A	82455910	3	1	9	1	0	0	0	0	1	0	0	0	11677	594	21	2	1067	2	PCLO	7	82455910	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	855914	82455910	76682753	8639	16790											
PCLO	27445	broad.mit.edu	37	chr7	82544898	82544899	+	Missense_Mutation	DNP	CC	AA	AA													ggtgatctaagctctctgtcCctctacgaaattcctgttta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	82544899	AA	AA	82544898	3	1	9	1	0	0	0	0	1	0	0	0	11677	623	22	2	3117	2	PCLO	7	82544898	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	88988	82544898	76593765	8640	16791											
PCLO	27445	broad.mit.edu	37	chr7	82545301	82545301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtacttactaccaagatGggaaacagcaaatgtgttat	8	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82545301	T	T	82545301	3	4	9	1	0	0	0	0	1	0	0	0	11677	1348	47	2	3520	2	PCLO	7	82545301	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	403	82545301	76593362	8641	16792											
PCLO	27445	broad.mit.edu	37	chr7	82545411	82545411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatataatgtagtttgcCgtggcttctgttgtatcacc	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82545411	A	A	82545411	3	1	9	1	0	0	0	0	1	0	0	0	11677	652	23	1	3630	1	PCLO	7	82545411	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110	82545411	76593252	8642	16793											
PCLO	27445	broad.mit.edu	37	chr7	82545610	82545610	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtatgaggtgggtgcttGggtaggaagagcaggggaag	21	2	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82545610	T	T	82545610	3	4	9	1	0	0	0	0	1	0	0	0	11677	1357	47	2	3829	2	PCLO	7	82545610	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	199	82545610	76593053	8643	16794											
PCLO	27445	broad.mit.edu	37	chr7	82579026	82579026	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgaaagtggtgagatGggtgagtaaaggactttggg	18	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82579026	T	T	82579026	2	4	9	1	0	0	0	0	0	0	0	1	11677	1335	47	2		2	PCLO	7	82579026	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33416	82579026	76559637	8644	16795											
PCLO	27445	broad.mit.edu	37	chr7	82580168	82580168	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgatcttttcttgttctcGgaacctttgaatttcctgac	6	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82580168	T	T	82580168	2	4	9	1	0	0	0	0	0	0	0	1	11677	1124	39	1		1	PCLO	7	82580168	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1142	82580168	76558495	8645	16796											
PCLO	27445	broad.mit.edu	37	chr7	82581608	82581608	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgattccctgggatacGgtgctatcagtccatccatt	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82581608	T	T	82581608	2	4	9	1	0	0	0	0	0	0	0	1	11677	1103	39	1		1	PCLO	7	82581608	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1440	82581608	76557055	8646	16797											
PCLO	27445	broad.mit.edu	37	chr7	82583255	82583255	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgggtgatcaaacacGgtttcggataagctactttt	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82583255	T	T	82583255	2	4	9	1	0	0	0	0	0	0	0	1	11677	1103	39	1		1	PCLO	7	82583255	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1647	82583255	76555408	8647	16798											
PCLO	27445	broad.mit.edu	37	chr7	82583285	82583285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctactttttgttcgttcGgcctccaactcctttttatc	5	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82583285	T	T	82583285	2	4	9	1	0	0	0	0	0	0	0	1	11677	1103	39	1		1	PCLO	7	82583285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	82583285	76555378	8648	16799											
PCLO	27445	broad.mit.edu	37	chr7	82584994	82584994	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggccatgtggtctgtgccGagctttgcgttgctgtttgc	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82584994	T	T	82584994	2	4	9	1	0	0	0	0	0	0	0	1	11677	1057	37	3		3	PCLO	7	82584994	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1709	82584994	76553669	8649	16800											
PCLO	27445	broad.mit.edu	37	chr7	82585386	82585386	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcgtcttcatcatgccatGagtgacgtcttcctgcatct	7	13	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82585386	T	T	82585386	4	4	9	1	0	0	0	0	0	1	0	0	11677	1294	45	3	10646	3	PCLO	7	82585386	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	392	82585386	76553277	8650	16801											
PCLO	27445	broad.mit.edu	37	chr7	82585432	82585432	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgcttgtgctactttttcGagtcagtcgtctgtgtttcc	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82585432	T	T	82585432	2	4	9	1	0	0	0	0	0	0	0	1	11677	1066	37	3		3	PCLO	7	82585432	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46	82585432	76553231	8651	16802											
PCLO	27445	broad.mit.edu	37	chr7	82764322	82764322	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcttccttcttttgtacGgggtcaacttgtttttgacc	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82764322	T	T	82764322	2	4	9	1	0	0	0	0	0	0	0	1	11677	1103	39	1		1	PCLO	7	82764322	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	178890	82764322	76374341	8652	16803											
PCLO	27445	broad.mit.edu	37	chr7	82764808	82764808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttttggtgcagcatcCttctttggggaagtctgctg	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82764808	A	A	82764808	3	1	9	1	0	0	0	0	1	0	0	0	11677	680	24	2	13479	2	PCLO	7	82764808	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	486	82764808	76373855	8653	16804											
PCLO	27445	broad.mit.edu	37	chr7	82784458	82784458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagccaggctgttgagatGggggctttgctgagccaggc	17	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82784458	T	T	82784458	3	4	9	1	0	0	0	0	1	0	0	0	11677	1348	47	2	14042	2	PCLO	7	82784458	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19650	82784458	76354205	8654	16805											
SEMA3E	9723	broad.mit.edu	37	chr7	82996965	82996965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaacggagcttcttttcCtgagggttggcatacttcca	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82996965	A	A	82996965	3	1	9	1	0	0	0	0	1	0	0	0	14141	680	24	2	66	2	SEMA3E	7	82996965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	212507	82996965	76141698	8655	16806											
SEMA3E	9723	broad.mit.edu	37	chr7	83029468	83029468	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttatgggcaggttttatGgcctggtacattagtggatg	13	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83029468	T	T	83029468	2	4	9	1	0	0	0	0	0	0	0	1	14141	1335	47	2		2	SEMA3E	7	83029468	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32503	83029468	76109195	8656	16807											
SEMA3E	9723	broad.mit.edu	37	chr7	83029609	83029609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattctttttgctttacaccCaaagagaaaatttataatca	3	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83029609	A	A	83029609	1	1	9	0	1	0	0	0	0	0	0	0	14141	609	21	2		2	SEMA3E	7	83029609	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	141	83029609	76109054	8657	16808											
SEMA3A	10371	broad.mit.edu	37	chr7	83590719	83590719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgccctctcaaattcgtGggtcctcctgtttctacctt	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83590719	T	T	83590719	3	4	9	1	0	0	0	0	1	0	0	0	14137	1348	47	2	35	2	SEMA3A	7	83590719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	561110	83590719	75547944	8658	16809											
SEMA3A	10371	broad.mit.edu	37	chr7	83592622	83592622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctactattctctacacCatagatgattctctcttcag	5	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83592622	A	A	83592622	3	1	9	1	0	0	0	0	1	0	0	0	14137	594	21	2	564	2	SEMA3A	7	83592622	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1903	83592622	75546041	8659	16810											
SEMA3A	10371	broad.mit.edu	37	chr7	83634702	83634702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccatcttctgcatccactCggtctacgacaatttgtgta	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83634702	A	A	83634702	3	1	9	1	0	0	0	0	1	0	0	0	14137	884	31	3	1030	3	SEMA3A	7	83634702	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42080	83634702	75503961	8660	16811											
SEMA3D	223117	broad.mit.edu	37	chr7	84636174	84636174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttaatagttgcttgttGggatttaggtatacattcca	8	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84636174	T	T	84636174	3	4	9	1	0	0	0	0	1	0	0	0	14140	1357	47	2	489	2	SEMA3D	7	84636174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1001472	84636174	74502489	8661	16812											
SEMA3D	223117	broad.mit.edu	37	chr7	84671514	84671514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaagtaagtatctgcccCatcacttccaggaattgagc	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84671514	A	A	84671514	3	1	9	1	0	0	0	0	1	0	0	0	14140	594	21	2	1424	2	SEMA3D	7	84671514	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35340	84671514	74467149	8662	16813											
SEMA3D	223117	broad.mit.edu	37	chr7	84671564	84671564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccttaagaaaagtcgtcCacttgtttatcaggctgcgt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84671564	A	A	84671564	3	1	9	1	0	0	0	0	1	0	0	0	14140	595	21	2	1474	2	SEMA3D	7	84671564	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	84671564	74467099	8663	16814											
SEMA3D	223117	broad.mit.edu	37	chr7	84727247	84727247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtccttctgatgaaccCaaaaagggaatacagctatt	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84727247	A	A	84727247	3	1	9	1	0	0	0	0	1	0	0	0	14140	593	21	2	2211	2	SEMA3D	7	84727247	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55683	84727247	74411416	8664	16815											
GRM3	2913	broad.mit.edu	37	chr7	86415890	86415890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcctacgacagcgtgatccGagaactgttgcagaagccca	11	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86415890	T	T	86415890	3	4	9	1	0	0	0	0	1	0	0	0	6864	1058	37	3	788	3	GRM3	7	86415890	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1688643	86415890	72722773	8665	16816											
KIAA1324L	222223	broad.mit.edu	37	chr7	86522333	86522333	+	Silent	SNP	C	A	A													accttcagccaaaagtcaacCgtttcacaggttgccaactt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86522333	A	A	86522333	2	1	9	1	0	0	0	0	0	0	0	1	8294	639	23	1		1	KIAA1324L	7	86522333	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	106443	86522333	72616330	8666	16817	108	2									
KIAA1324L	222223	broad.mit.edu	37	chr7	86522342	86522342	+	Silent	SNP	G	T	T													caaaagtcaaccgtttcacaGgttgccaactttttctcagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86522342	T	T	86522342	2	4	9	1	0	0	0	0	0	0	0	1	8294	987	35	2		2	KIAA1324L	7	86522342	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	86522342	72616321	8667	16818	108	2									
KIAA1324L	222223	broad.mit.edu	37	chr7	86541451	86541451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctttggaggtgaagctGgggccattcattaatgagcc	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86541451	T	T	86541451	2	4	9	1	0	0	0	0	0	0	0	1	8294	1335	47	2		2	KIAA1324L	7	86541451	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19109	86541451	72597212	8668	16819											
CROT	54677	broad.mit.edu	37	chr7	86983830	86983830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagatgtattttaaaagcCaaaagtacagaatcaagtta	6	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86983830	A	A	86983830	1	1	9	0	1	0	0	0	0	0	0	0	3926	609	21	2		2	CROT	7	86983830	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	442379	86983830	72154833	8669	16820											
CROT	54677	broad.mit.edu	37	chr7	87022265	87022265	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttattgtgccacacagcGgaggaggtggaaattttgtt	12	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87022265	T	T	87022265	4	4	9	1	0	0	0	0	0	1	0	0	3926	1130	39	1	1746	1	CROT	7	87022265	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38435	87022265	72116398	8670	16821											
CROT	54677	broad.mit.edu	37	chr7	87022321	87022321	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggctatttacgagtccaGggagtggtagttcccatggt	14	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87022321	C	C	87022321	3	2	9	1	0	0	0	0	1	0	0	0	3926	991	35	4	1802	4	CROT	7	87022321	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	87022321	72116342	8671	16822											
ABCB4	5244	broad.mit.edu	37	chr7	87032525	87032525	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgtctgatgagggctcGggcaatagcaatcctctgtt	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87032525	T	T	87032525	2	4	9	1	0	0	0	0	0	0	0	1	43	1124	39	1		1	ABCB4	7	87032525	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10204	87032525	72106138	8672	16823											
ABCB4	5244	broad.mit.edu	37	chr7	87035680	87035680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatcctgtgatacaaccCggctgttgtctccataggca	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87035680	A	A	87035680	3	1	9	1	0	0	0	0	1	0	0	0	43	652	23	1	441	1	ABCB4	7	87035680	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3155	87035680	72102983	8673	16824											
ABCB4	5244	broad.mit.edu	37	chr7	87069025	87069025	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcttcactttctgtgtcCaatgctgacgtggcctcatc	8	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87069025	A	A	87069025	3	1	9	1	0	0	0	0	1	0	0	0	43	593	21	2	2231	2	ABCB4	7	87069025	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33345	87069025	72069638	8674	16825											
ABCB4	5244	broad.mit.edu	37	chr7	87082321	87082321	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaccatcctatttcctgtcGtagaatagcatgaaaaaact	5	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87082321	A	A	87082321	4	1	9	1	0	0	0	0	0	1	0	0	43	1153	40	4	3477	4	ABCB4	7	87082321	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13296	87082321	72056342	8675	16826											
ABCB1	5243	broad.mit.edu	37	chr7	87145840	87145840	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccggcattaggccttcCgtgctgtagctgtcaatcaa	9	13	3	0	rs138566631	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87145840	A	A	87145840	2	1	9	1	0	0	0	0	0	0	0	1	40	639	23	1		1	ABCB1	7	87145840	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63519	87145840	71992823	8676	16827											
ABCB1	5243	broad.mit.edu	37	chr7	87179321	87179321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacaccaatgatttccCgtagaaaccttacatttatg	4	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87179321	A	A	87179321	3	1	9	1	0	0	0	0	1	0	0	0	40	652	23	1	2506	1	ABCB1	7	87179321	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33481	87179321	71959342	8677	16828											
DBF4	10926	broad.mit.edu	37	chr7	87507553	87507553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggggtaagtgaaaacCgtacactggcatagaaggaa	15	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87507553	A	A	87507553	1	1	9	0	1	0	0	0	0	0	0	0	4281	667	23	1		1	DBF4	7	87507553	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	328232	87507553	71631110	8678	16829											
DBF4	10926	broad.mit.edu	37	chr7	87536698	87536698	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgtttatttcagagccCatcccccacccttcaaatga	4	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87536698	A	A	87536698	2	1	9	1	0	0	0	0	0	0	0	1	4281	581	21	2		2	DBF4	7	87536698	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29145	87536698	71601965	8679	16830											
ADAM22	53616	broad.mit.edu	37	chr7	87737534	87737534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccatatccgaggaaaccCtgactcatttgttgcattgt	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87737534	A	A	87737534	3	1	9	1	0	0	0	0	1	0	0	0	244	681	24	2	452	2	ADAM22	7	87737534	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	200836	87737534	71401129	8680	16831											
ADAM22	53616	broad.mit.edu	37	chr7	87743915	87743915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgggatgttctatgacGggaaccacacatatctcatt	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87743915	T	T	87743915	3	4	9	1	0	0	0	0	1	0	0	0	244	1116	39	1	512	1	ADAM22	7	87743915	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6381	87743915	71394748	8681	16832											
ADAM22	53616	broad.mit.edu	37	chr7	87774842	87774842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaataaacattaatgacCatttgacagaaaaaaaggac	7	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87774842	A	A	87774842	1	1	9	0	1	0	0	0	0	0	0	0	244	609	21	2		2	ADAM22	7	87774842	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30927	87774842	71363821	8682	16833											
ADAM22	53616	broad.mit.edu	37	chr7	87815974	87815974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactataatgtagctaagtGggtagaagatgtgaataaaa	11	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87815974	T	T	87815974	1	4	9	0	1	0	0	0	0	0	0	0	244	1357	47	2		2	ADAM22	7	87815974	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41132	87815974	71322689	8683	16834											
MGC26647	219557	broad.mit.edu	37	chr7	88423978	88423978	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatatgcagaatggaagtGggatagatgagcagcaatcc	14	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88423978	T	T	88423978	2	4	9	1	0	0	0	0	0	0	0	1	9643	1335	47	2		2	MGC26647	7	88423978	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	608004	88423978	70714685	8684	16835											
ZNF804B	219578	broad.mit.edu	37	chr7	88956680	88956680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaaagaattaaagcaacGggaatttgctcgaaatgtag	10	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88956680	T	T	88956680	3	4	9	1	0	0	0	0	1	0	0	0	18300	1116	39	1	282	1	ZNF804B	7	88956680	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	532702	88956680	70181983	8685	16836											
ZNF804B	219578	broad.mit.edu	37	chr7	88965181	88965181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggctccttcgcaagtccCatgcacaattcaacttgcac	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88965181	A	A	88965181	3	1	9	1	0	0	0	0	1	0	0	0	18300	594	21	2	2899	2	ZNF804B	7	88965181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8501	88965181	70173482	8686	16837											
C7orf63	79846	broad.mit.edu	37	chr7	89927075	89927075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttaaggtgctgtattttGggatgttatccctcagagga	11	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89927075	T	T	89927075	3	4	9	1	0	0	0	0	1	0	0	0	2434	1339	47	2	1850	2	C7orf63	7	89927075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	961894	89927075	69211588	8687	16838											
C7orf63	79846	broad.mit.edu	37	chr7	89929315	89929315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagtcttttaattaaattGtggagaaaggaggaaaaaga	11	2	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89929315	T	T	89929315	3	4	9	1	0	0	0	0	1	0	0	0	2434	1368	48	3	2058	3	C7orf63	7	89929315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2240	89929315	69209348	8688	16839											
GTPBP10	85865	broad.mit.edu	37	chr7	89984478	89984478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacttacaaatttcttacCattgaaaggccagaaacgaa	5	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89984478	A	A	89984478	3	1	9	1	0	0	0	0	1	0	0	0	6944	594	21	2	412	2	GTPBP10	7	89984478	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55163	89984478	69154185	8689	16840											
CLDN12	9069	broad.mit.edu	37	chr7	90042001	90042001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcctgccatgggctgtcGggatgtccacgcagccacag	13	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90042001	T	T	90042001	3	4	9	1	0	0	0	0	1	0	0	0	3505	1116	39	1	13	1	CLDN12	7	90042001	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	57523	90042001	69096662	8690	16841											
FZD1	8321	broad.mit.edu	37	chr7	90894633	90894633	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgaaccaggaggacgcGggcctggaggtgcaccagtt	15	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90894633	T	T	90894633	2	4	9	1	0	0	0	0	0	0	0	1	6188	1103	39	1		1	FZD1	7	90894633	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	852632	90894633	68244030	8691	16842											
MTERF	7978	broad.mit.edu	37	chr7	91503700	91503700	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgttttgaaagattctcGggagtacgtgttattgctcg	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91503700	T	T	91503700	2	4	9	1	0	0	0	0	0	0	0	1	10012	1103	39	1		1	MTERF	7	91503700	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	609067	91503700	67634963	8692	16843											
AKAP9	10142	broad.mit.edu	37	chr7	91621524	91621524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcctacaaatttattaaGggtacagtatttaaaactac	5	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91621524	T	T	91621524	3	4	9	1	0	0	0	0	1	0	0	0	459	1014	35	2	418	2	AKAP9	7	91621524	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	117824	91621524	67517139	8693	16844											
AKAP9	10142	broad.mit.edu	37	chr7	91731992	91731992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgctgctgttactgggtGggttccaggaatgtgaagat	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91731992	T	T	91731992	3	4	9	1	0	0	0	0	1	0	0	0	459	1348	47	2	11364	2	AKAP9	7	91731992	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110468	91731992	67406671	8694	16845											
CYP51A1	1595	broad.mit.edu	37	chr7	91752595	91752595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaatccaataagcatccCtgctacttcatcatcagtca	5	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91752595	A	A	91752595	3	1	9	1	0	0	0	0	1	0	0	0	4228	681	24	2	620	2	CYP51A1	7	91752595	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20603	91752595	67386068	8695	16846											
CYP51A1	1595	broad.mit.edu	37	chr7	91753147	91753147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatatccttgatttccCgatgagctctgtccctgcgt	8	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91753147	A	A	91753147	3	1	9	1	0	0	0	0	1	0	0	0	4228	652	23	1	758	1	CYP51A1	7	91753147	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	552	91753147	67385516	8696	16847											
ANKIB1	54467	broad.mit.edu	37	chr7	91948771	91948771	+	Missense_Mutation	SNP	G	T	T													atctcaaatggtattctcacGggatcccgaggctgaagaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91948771	T	T	91948771	3	4	9	1	0	0	0	0	1	0	0	0	630	1116	39	1	624	1	ANKIB1	7	91948771	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	195624	91948771	67189892	8697	16848	109	2									
ANKIB1	54467	broad.mit.edu	37	chr7	91948778	91948778	+	Silent	SNP	C	A	A													atggtattctcacgggatccCgaggctgaagaaatagaagc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91948778	A	A	91948778	2	1	9	1	0	0	0	0	0	0	0	1	630	639	23	1		1	ANKIB1	7	91948778	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	91948778	67189885	8698	16849	109	2									
ANKIB1	54467	broad.mit.edu	37	chr7	91974374	91974374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttttgtagaggatgttGggagtcgtgagtatatgagc	15	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91974374	T	T	91974374	3	4	9	1	0	0	0	0	1	0	0	0	630	1357	47	2	1101	2	ANKIB1	7	91974374	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25596	91974374	67164289	8699	16850											
ANKIB1	54467	broad.mit.edu	37	chr7	92021572	92021572	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagctttgctggtggaacatGggattgggaatatttaggat	14	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92021572	C	C	92021572	3	2	9	1	0	0	0	0	1	0	0	0	630	1357	47	4	2311	4	ANKIB1	7	92021572	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47198	92021572	67117091	8700	16851											
GATAD1	57798	broad.mit.edu	37	chr7	92083965	92083965	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctaccctctctagcccCagagaccaatttgatcccgc	5	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92083965	A	A	92083965	2	1	9	1	0	0	0	0	0	0	0	1	6321	581	21	2		2	GATAD1	7	92083965	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62393	92083965	67054698	8701	16852											
PEX1	5189	broad.mit.edu	37	chr7	92120645	92120645	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcttccaaagtagagccGgtacatattgaattttgatt	9	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92120645	T	T	92120645	2	4	9	1	0	0	0	0	0	0	0	1	11830	1115	39	1		1	PEX1	7	92120645	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36680	92120645	67018018	8702	16853											
PEX1	5189	broad.mit.edu	37	chr7	92123852	92123852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaactggttaactactcGgtctgtaactcctgtattat	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92123852	T	T	92123852	2	4	9	1	0	0	0	0	0	0	0	1	11830	1124	39	1		1	PEX1	7	92123852	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3207	92123852	67014811	8703	16854											
PEX1	5189	broad.mit.edu	37	chr7	92123881	92123881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgtattatcatgacccCgccgaggagcaatggattca	9	12	2	1	rs61750425		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92123881	A	A	92123881	3	1	9	1	0	0	0	0	1	0	0	0	11830	652	23	1	1033	1	PEX1	7	92123881	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	92123881	67014782	8704	16855											
PEX1	5189	broad.mit.edu	37	chr7	92126042	92126042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacctaataaaaatatccCgaacagcttgttcacttgct	4	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92126042	A	A	92126042	3	1	9	1	0	0	0	0	1	0	0	0	11830	652	23	1	1115	1	PEX1	7	92126042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2161	92126042	67012621	8705	16856											
PEX1	5189	broad.mit.edu	37	chr7	92129121	92129121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtattcctgttctttgtCgtatgggcaagtttgcaaat	9	7	1	0	rs139797041		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92129121	A	A	92129121	3	1	9	1	0	0	0	0	1	0	0	0	11830	884	31	3	1272	3	PEX1	7	92129121	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3079	92129121	67009542	8706	16857											
SAMD9	54809	broad.mit.edu	37	chr7	92730669	92730669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaatgtcataagcaagtGggcctccaatggaaaatccc	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92730669	T	T	92730669	3	4	9	1	0	0	0	0	1	0	0	0	13937	1348	47	2	31	2	SAMD9	7	92730669	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	601548	92730669	66407994	8707	16858											
SAMD9	54809	broad.mit.edu	37	chr7	92731863	92731863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataccgcctttttgacttcGgatacaatctttccttcact	4	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92731863	T	T	92731863	3	4	9	1	0	0	0	0	1	0	0	0	13937	1116	39	1	1225	1	SAMD9	7	92731863	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1194	92731863	66406800	8708	16859											
SAMD9	54809	broad.mit.edu	37	chr7	92731987	92731987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcaactgaaatgttccCgtttcctccgttttcctcta	4	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92731987	A	A	92731987	3	1	9	1	0	0	0	0	1	0	0	0	13937	652	23	1	1349	1	SAMD9	7	92731987	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	124	92731987	66406676	8709	16860											
SAMD9	54809	broad.mit.edu	37	chr7	92734750	92734750	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacaagctgaagcaaatcGgaaaacctcattgctaaatt	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92734750	T	T	92734750	2	4	9	1	0	0	0	0	0	0	0	1	13937	1124	39	1		1	SAMD9	7	92734750	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2763	92734750	66403913	8710	16861											
SAMD9	54809	broad.mit.edu	37	chr7	92734833	92734833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctttgaattcatgtatcGgatcaatgagattgcctggt	11	6	2	2	rs151163886		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92734833	T	T	92734833	3	4	9	1	0	0	0	0	1	0	0	0	13937	1116	39	1	4195	1	SAMD9	7	92734833	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	92734833	66403830	8711	16862											
SAMD9L	219285	broad.mit.edu	37	chr7	92762758	92762758	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcactttcatctggattccGggatctcatgcagtttaaga	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92762758	T	T	92762758	2	4	9	1	0	0	0	0	0	0	0	1	13938	1115	39	1		1	SAMD9L	7	92762758	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27925	92762758	66375905	8712	16863											
SAMD9L	219285	broad.mit.edu	37	chr7	92764209	92764209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccttgaaatctacatccCgttgcttggaattggccagg	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92764209	A	A	92764209	3	1	9	1	0	0	0	0	1	0	0	0	13938	652	23	1	3682	1	SAMD9L	7	92764209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1451	92764209	66374454	8713	16864											
SAMD9L	219285	broad.mit.edu	37	chr7	92765024	92765024	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaattatctaattgtccCggatcatgattgtcactttc	6	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92765024	A	A	92765024	2	1	9	1	0	0	0	0	0	0	0	1	13938	639	23	1		1	SAMD9L	7	92765024	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	815	92765024	66373639	8714	16865											
HEPACAM2	253012	broad.mit.edu	37	chr7	92826512	92826512	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaacacaactaattaacaTacattaaaactgataatagc	2	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92826512	C	C	92826512	1	2	9	0	1	0	0	0	0	0	0	0	7120	1421	49	5		5	HEPACAM2	7	92826512	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	61488	92826512	66312151	8715	16866											
HEPACAM2	253012	broad.mit.edu	37	chr7	92848754	92848754	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactgtcaccttcagcccCgagcaagcacctgttgcaaa	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92848754	A	A	92848754	2	1	9	1	0	0	0	0	0	0	0	1	7120	639	23	1		1	HEPACAM2	7	92848754	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22242	92848754	66289909	8716	16867											
CCDC132	55610	broad.mit.edu	37	chr7	92869178	92869178	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcttattatttttttaaGggtctgaaaagccctcaaga	6	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92869178	T	T	92869178	5	4	9	1	0	0	0	0	0	0	1	0	2793	1014	35	2	39	2	CCDC132	7	92869178	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	20424	92869178	66269485	8717	16868											
CCDC132	55610	broad.mit.edu	37	chr7	92905527	92905527	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaagccattcacaacacCgtgtttcaagttgttcttgg	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92905527	A	A	92905527	2	1	9	1	0	0	0	0	0	0	0	1	2793	639	23	1		1	CCDC132	7	92905527	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36349	92905527	66233136	8718	16869											
CCDC132	55610	broad.mit.edu	37	chr7	92905554	92905554	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttgttcttggttatgtGgaactatgtgcaggaaacac	11	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92905554	T	T	92905554	2	4	9	1	0	0	0	0	0	0	0	1	2793	1335	47	2		2	CCDC132	7	92905554	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	92905554	66233109	8719	16870											
CCDC132	55610	broad.mit.edu	37	chr7	92932777	92932777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttttttaagaacacGgctcgatgaactgagaatgt	8	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92932777	T	T	92932777	3	4	9	1	0	0	0	0	1	0	0	0	2793	1116	39	1	1475	1	CCDC132	7	92932777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27223	92932777	66205886	8720	16871											
CCDC132	55610	broad.mit.edu	37	chr7	92940486	92940486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatatcaagtgtttctcGggaaactctaaaaagcagga	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92940486	T	T	92940486	3	4	9	1	0	0	0	0	1	0	0	0	2793	1116	39	1	1877	1	CCDC132	7	92940486	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7709	92940486	66198177	8721	16872											
CCDC132	55610	broad.mit.edu	37	chr7	92987608	92987608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttagggtactaaatttGgatctttcttctttgagcag	8	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92987608	T	T	92987608	1	4	9	0	1	0	0	0	0	0	0	0	2793	1363	47	2		2	CCDC132	7	92987608	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47122	92987608	66151055	8722	16873											
COL1A2	1278	broad.mit.edu	37	chr7	94038685	94038685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggtcccgccggtcccCgtggtgaagtgggtcttcca	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94038685	A	A	94038685	3	1	9	1	0	0	0	0	1	0	0	0	3710	652	23	1	910	1	COL1A2	7	94038685	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1051077	94038685	65099978	8723	16874											
COL1A2	1278	broad.mit.edu	37	chr7	94042447	94042447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggtcttgctggtgctcGggtaggtgctaacttgtgta	15	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94042447	T	T	94042447	3	4	9	1	0	0	0	0	1	0	0	0	3710	1130	39	1	1658	1	COL1A2	7	94042447	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3762	94042447	65096216	8724	16875											
COL1A2	1278	broad.mit.edu	37	chr7	94048770	94048770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttcacttttgatgatacGgggtgttattaataagacat	10	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94048770	T	T	94048770	1	4	9	0	1	0	0	0	0	0	0	0	3710	1131	39	1		1	COL1A2	7	94048770	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6323	94048770	65089893	8725	16876											
CASD1	64921	broad.mit.edu	37	chr7	94147612	94147612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaaaaataattaatcccCaattcaaagaagaaggaaat	5	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94147612	A	A	94147612	3	1	9	1	0	0	0	0	1	0	0	0	2690	595	21	2	338	2	CASD1	7	94147612	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98842	94147612	64991051	8726	16877											
CASD1	64921	broad.mit.edu	37	chr7	94178941	94178941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcagatggaggttagacCgttatgtatgtatttacttt	11	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94178941	A	A	94178941	3	1	9	1	0	0	0	0	1	0	0	0	2690	652	23	1	1864	1	CASD1	7	94178941	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31329	94178941	64959722	8727	16878											
PPP1R9A	55607	broad.mit.edu	37	chr7	94913434	94913434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggtttaatgacagccGgaaaggatcctattccttca	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94913434	T	T	94913434	1	4	9	0	1	0	0	0	0	0	0	0	12479	1116	39	1		1	PPP1R9A	7	94913434	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	734493	94913434	64225229	8728	16879											
PON1	5444	broad.mit.edu	37	chr7	94935604	94935604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatacgtcttaccttcaatGgagttaaagtccaattagca	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94935604	T	T	94935604	3	4	9	1	0	0	0	0	1	0	0	0	12343	1348	47	2	306	2	PON1	7	94935604	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22170	94935604	64203059	8729	16880											
PON3	5446	broad.mit.edu	37	chr7	95019486	95019486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggagataaaagccagccCactaggaagtatatcaatat	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95019486	A	A	95019486	3	1	9	1	0	0	0	0	1	0	0	0	12345	594	21	2	911	2	PON3	7	95019486	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83882	95019486	64119177	8730	16881											
PON2	5445	broad.mit.edu	37	chr7	95035509	95035509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctacccagatgtccccCgaggaaggatcaatagataa	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95035509	A	A	95035509	2	1	9	1	0	0	0	0	0	0	0	1	12344	639	23	1		1	PON2	7	95035509	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16023	95035509	64103154	8731	16882											
DYNC1I1	1780	broad.mit.edu	37	chr7	95657552	95657552	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggttggtgggacttactcGggccagattgtcctctggga	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95657552	T	T	95657552	2	4	9	1	0	0	0	0	0	0	0	1	4882	1103	39	1		1	DYNC1I1	7	95657552	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	622043	95657552	63481111	8732	16883											
DYNC1I1	1780	broad.mit.edu	37	chr7	95661984	95661984	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtttttgcagcatccCgtgtactgtgtaaatgttgt	9	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95661984	A	A	95661984	2	1	9	1	0	0	0	0	0	0	0	1	4882	639	23	1		1	DYNC1I1	7	95661984	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4432	95661984	63476679	8733	16884											
DYNC1I1	1780	broad.mit.edu	37	chr7	95664996	95664996	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accggaatggctttcccaacGggagacgtcaataacttcgt	10	11	1	1	rs142103982		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95664996	T	T	95664996	2	4	9	1	0	0	0	0	0	0	0	1	4882	1103	39	1		1	DYNC1I1	7	95664996	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3012	95664996	63473667	8734	16885											
DYNC1I1	1780	broad.mit.edu	37	chr7	95705320	95705320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaggctctctagacagccCgaggcagcagcagcgccaca	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95705320	A	A	95705320	1	1	9	0	1	0	0	0	0	0	0	0	4882	667	23	1		1	DYNC1I1	7	95705320	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	40324	95705320	63433343	8735	16886											
DYNC1I1	1780	broad.mit.edu	37	chr7	95705465	95705465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctttttgcctgcgtggacGggatggggcgcttggacctc	16	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95705465	T	T	95705465	3	4	9	1	0	0	0	0	1	0	0	0	4882	1116	39	1	1711	1	DYNC1I1	7	95705465	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	145	95705465	63433198	8736	16887											
SLC25A13	10165	broad.mit.edu	37	chr7	95761238	95761238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacatgaaacacatatccCattgaggagatcaagcttct	6	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95761238	A	A	95761238	1	1	9	0	1	0	0	0	0	0	0	0	14589	609	21	2		2	SLC25A13	7	95761238	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55773	95761238	63377425	8737	16888											
SLC25A13	10165	broad.mit.edu	37	chr7	95775896	95775896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaaaaaccccaggtccCgcacgacagacagagcactg	8	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95775896	A	A	95775896	3	1	9	1	0	0	0	0	1	0	0	0	14589	652	23	1	623	1	SLC25A13	7	95775896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14658	95775896	63362767	8738	16889											
SLC25A13	10165	broad.mit.edu	37	chr7	95818664	95818664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttccagaggagcaatcCgttcaatgtctgctaaggtc	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95818664	A	A	95818664	3	1	9	1	0	0	0	0	1	0	0	0	14589	652	23	1	1195	1	SLC25A13	7	95818664	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42768	95818664	63319999	8739	16890											
SLC25A13	10165	broad.mit.edu	37	chr7	95926264	95926264	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctcttggttaaagccacCtataaataaacataaaaatg	5	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95926264	A	A	95926264	5	1	9	1	0	0	0	0	0	0	1	0	14589	695	24	2	2083	2	SLC25A13	7	95926264	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	107600	95926264	63212399	8740	16891											
ASNS	440	broad.mit.edu	37	chr7	97488575	97488575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgtgcaggggtacatccCgacagtgatgatatttaacc	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97488575	A	A	97488575	3	1	9	1	0	0	0	0	1	0	0	0	1052	652	23	1	1098	1	ASNS	7	97488575	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1562311	97488575	61650088	8741	16892											
LMTK2	22853	broad.mit.edu	37	chr7	97821752	97821752	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgacttaatggaattaaacGgagttcaagccgactttaaa	8	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97821752	T	T	97821752	4	4	9	1	0	0	0	0	0	1	0	0	8933	1117	39	1	2017	1	LMTK2	7	97821752	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	333177	97821752	61316911	8742	16893											
LMTK2	22853	broad.mit.edu	37	chr7	97833150	97833150	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaactgccatctgccagccGggccgggctgtgtcttccga	13	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97833150	C	C	97833150	1	2	9	0	1	0	0	0	0	0	0	0	8933	1131	39	4		4	LMTK2	7	97833150	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11398	97833150	61305513	8743	16894											
TECPR1	25851	broad.mit.edu	37	chr7	97870521	97870521	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaccaggaggacccttcGgggttggagtggctgacgtc	18	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97870521	T	T	97870521	2	4	9	1	0	0	0	0	0	0	0	1	15865	1103	39	1		1	TECPR1	7	97870521	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37371	97870521	61268142	8744	16895											
TECPR1	25851	broad.mit.edu	37	chr7	97873979	97873979	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctttcgtgtaggtggcGggaaagtcgatggcgtacgt	16	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97873979	T	T	97873979	2	4	9	1	0	0	0	0	0	0	0	1	15865	1103	39	1		1	TECPR1	7	97873979	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3458	97873979	61264684	8745	16896											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97939825	97939825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaaacatatcgatcaagGgactggtatatgctctgcct	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97939825	T	T	97939825	3	4	9	1	0	0	0	0	1	0	0	0	1307	1232	43	2	672	2	BAIAP2L1	7	97939825	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65846	97939825	61198838	8746	16897											
TRRAP	8295	broad.mit.edu	37	chr7	98495518	98495518	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcgctgagttatttctaccCgtggctcctgtagtttcgga	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98495518	G	G	98495518	1	3	9	0	1	0	0	0	0	0	0	0	16726	667	23	4		4	TRRAP	7	98495518	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	555693	98495518	60643145	8747	16898											
TRRAP	8295	broad.mit.edu	37	chr7	98543388	98543388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaagcatttccgagtgcGggagatgtcccttgtctcca	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98543388	T	T	98543388	3	4	9	1	0	0	0	0	1	0	0	0	16726	1131	39	1		1	TRRAP	7	98543388	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47870	98543388	60595275	8748	16899											
TRRAP	8295	broad.mit.edu	37	chr7	98547697	98547697	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctccagaaggaattacGgagatatagaattgctgttc	10	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98547697	T	T	98547697	4	4	9	1	0	0	0	0	0	1	0	0	16726	1117	39	1	5209	1	TRRAP	7	98547697	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4309	98547697	60590966	8749	16900											
TRRAP	8295	broad.mit.edu	37	chr7	98548596	98548596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatccagaaggagataaccCagaaagcatcaccagtgtgt	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98548596	A	A	98548596	3	1	9	1	0	0	0	0	1	0	0	0	16726	594	21	2	5499	2	TRRAP	7	98548596	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	899	98548596	60590067	8750	16901											
TRRAP	8295	broad.mit.edu	37	chr7	98554112	98554112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtccgtggattctgccCaggaagtgaaacgctttagg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98554112	A	A	98554112	3	1	9	1	0	0	0	0	1	0	0	0	16726	595	21	2	6270	2	TRRAP	7	98554112	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5516	98554112	60584551	8751	16902											
TRRAP	8295	broad.mit.edu	37	chr7	98567705	98567705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgccacgcgcatgccttGggtctgtctcctttccgcac	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98567705	T	T	98567705	1	4	9	0	1	0	0	0	0	0	0	0	16726	1363	47	2		2	TRRAP	7	98567705	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13593	98567705	60570958	8752	16903											
TRRAP	8295	broad.mit.edu	37	chr7	98589833	98589833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgaaaatagaacagcGggaacgctacaagagcggta	12	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98589833	T	T	98589833	3	4	9	1	0	0	0	0	1	0	0	0	16726	1116	39	1	10001	1	TRRAP	7	98589833	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22128	98589833	60548830	8753	16904											
TRRAP	8295	broad.mit.edu	37	chr7	98602879	98602879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgcctcacagagtcacGgcgagaggagcgtgtgttgc	15	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98602879	T	T	98602879	3	4	9	1	0	0	0	0	1	0	0	0	16726	1116	39	1	10794	1	TRRAP	7	98602879	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13046	98602879	60535784	8754	16905											
TRRAP	8295	broad.mit.edu	37	chr7	98606005	98606005	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctctccccagtgcccCgggttgtggcagtttcccca	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98606005	A	A	98606005	2	1	9	1	0	0	0	0	0	0	0	1	16726	643	23	1		1	TRRAP	7	98606005	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3126	98606005	60532658	8755	16906											
SMURF1	57154	broad.mit.edu	37	chr7	98634825	98634825	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacaacctggaagaaaaactCgcaagttggatgcaacacca	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98634825	A	A	98634825	1	1	9	0	1	0	0	0	0	0	0	0	14933	899	31	3		3	SMURF1	7	98634825	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28820	98634825	60503838	8756	16907											
SMURF1	57154	broad.mit.edu	37	chr7	98639809	98639809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagaatactggaagagccCgtaataaggattcagcattt	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98639809	A	A	98639809	3	1	9	1	0	0	0	0	1	0	0	0	14933	652	23	1	920	1	SMURF1	7	98639809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4984	98639809	60498854	8757	16908											
PDAP1	11333	broad.mit.edu	37	chr7	99002588	99002588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttcttcctgcagagaccCgcagtttaggtgagcggaag	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99002588	A	A	99002588	1	1	9	0	1	0	0	0	0	0	0	0	11707	667	23	1		1	PDAP1	7	99002588	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	362779	99002588	60136075	8758	16909											
PTCD1	26024	broad.mit.edu	37	chr7	99027403	99027403	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccgtgtaggtggcgtcCgagggctccaggtcccgctt	17	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99027403	A	A	99027403	2	1	9	1	0	0	0	0	0	0	0	1	12833	639	23	1		1	PTCD1	7	99027403	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24815	99027403	60111260	8759	16910											
PTCD1	26024	broad.mit.edu	37	chr7	99032523	99032523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcatctctccgttcccCaaaccgcaggttatggaact	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99032523	A	A	99032523	3	1	9	1	0	0	0	0	1	0	0	0	12833	594	21	2	1787	2	PTCD1	7	99032523	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5120	99032523	60106140	8760	16911											
PTCD1	26024	broad.mit.edu	37	chr7	99032598	99032598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttgtcagagagggtccCaaaactctcctcctcctcct	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99032598	A	A	99032598	3	1	9	1	0	0	0	0	1	0	0	0	12833	594	21	2	1862	2	PTCD1	7	99032598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	99032598	60106065	8761	16912											
CPSF4	10898	broad.mit.edu	37	chr7	99045871	99045871	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgacatgaccaagatgccCgagtgctacttctactccaa	7	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99045871	A	A	99045871	2	1	9	1	0	0	0	0	0	0	0	1	3860	639	23	1		1	CPSF4	7	99045871	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13273	99045871	60092792	8762	16913											
CPSF4	10898	broad.mit.edu	37	chr7	99051674	99051674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaatcagcagagaacccCgcaggtcatcggggtcatgc	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99051674	A	A	99051674	3	1	9	1	0	0	0	0	1	0	0	0	3860	652	23	1	682	1	CPSF4	7	99051674	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5803	99051674	60086989	8763	16914											
ZNF394	84124	broad.mit.edu	37	chr7	99091898	99091898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttgcttgcacttgttccCgtgttcctcactgtcagtgg	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99091898	A	A	99091898	3	1	9	1	0	0	0	0	1	0	0	0	18007	652	23	1	749	1	ZNF394	7	99091898	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40224	99091898	60046765	8764	16915											
ZNF394	84124	broad.mit.edu	37	chr7	99091933	99091933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgggcctctctgctttcGggatgtgctgacatagaaca	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99091933	T	T	99091933	3	4	9	1	0	0	0	0	1	0	0	0	18007	1116	39	1	784	1	ZNF394	7	99091933	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	99091933	60046730	8765	16916											
ZNF498	221785	broad.mit.edu	37	chr7	99217144	99217144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgatgtagagacagaactGggatgggctgacctttcatg	13	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99217144	T	T	99217144	1	4	9	0	1	0	0	0	0	0	0	0	18074	1363	47	2		2	ZNF498	7	99217144	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	125211	99217144	59921519	8766	16917											
ZNF498	221785	broad.mit.edu	37	chr7	99217277	99217277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctcctcagcagcagttGggtattcctgtggtgaaact	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99217277	T	T	99217277	3	4	9	1	0	0	0	0	1	0	0	0	18074	1339	47	2	50	2	ZNF498	7	99217277	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	133	99217277	59921386	8767	16918											
CYP3A5	1577	broad.mit.edu	37	chr7	99270342	99270342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgattaaacttcactagccCgattctgcagctggagccac	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99270342	A	A	99270342	1	1	9	0	1	0	0	0	0	0	0	0	4213	667	23	1		1	CYP3A5	7	99270342	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53065	99270342	59868321	8768	16919											
CYP3A7	1551	broad.mit.edu	37	chr7	99308361	99308361	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgtccactcaccttattGggtaaaactgtatcaatttc	5	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99308361	T	T	99308361	2	4	9	1	0	0	0	0	0	0	0	1	4214	1335	47	2		2	CYP3A7	7	99308361	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38019	99308361	59830302	8769	16920											
CYP3A7	1551	broad.mit.edu	37	chr7	99315256	99315256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcataaatcccactggccCgaaaggctagagttcaaagc	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99315256	A	A	99315256	3	1	9	1	0	0	0	0	1	0	0	0	4214	652	23	1	1222	1	CYP3A7	7	99315256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6895	99315256	59823407	8770	16921											
CYP3A4	1576	broad.mit.edu	37	chr7	99355771	99355771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattcaggctccacttacGgtgccatcccttgactcaac	6	14	2	1	rs147125009	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99355771	T	T	99355771	2	4	9	1	0	0	0	0	0	0	0	1	4211	1103	39	1		1	CYP3A4	7	99355771	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40515	99355771	59782892	8771	16922											
CYP3A4	1576	broad.mit.edu	37	chr7	99364652	99364652	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcagtcttcatgttaaaaGcattctttaaaaacatacag	6	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99364652	A	A	99364652	1	1	9	0	1	0	0	0	0	0	0	0	4211	986	34	4		4	CYP3A4	7	99364652	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8881	99364652	59774011	8772	16923											
CYP3A4	1576	broad.mit.edu	37	chr7	99367427	99367427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgcctgtctctgcttccCgcctcagatttctcaccaac	6	17	3	1	rs4986907	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99367427	A	A	99367427	3	1	9	1	0	0	0	0	1	0	0	0	4211	652	23	1	1058	1	CYP3A4	7	99367427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2775	99367427	59771236	8773	16924											
TRIM4	89122	broad.mit.edu	37	chr7	99490096	99490096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattcccatgacgtcctccCgacacaccccaacagcaacc	4	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99490096	A	A	99490096	3	1	9	1	0	0	0	0	1	0	0	0	16638	652	23	1	313	1	TRIM4	7	99490096	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122669	99490096	59648567	8774	16925											
TRIM4	89122	broad.mit.edu	37	chr7	99514346	99514346	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctgcttaaaatggtacaaGagcagcctaattagtcttct	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99514346	T	T	99514346	2	4	9	1	0	0	0	0	0	0	0	1	16638	929	33	3		3	TRIM4	7	99514346	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24250	99514346	59624317	8775	16926											
TRIM4	89122	broad.mit.edu	37	chr7	99514384	99514384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttccattcatccacgtGgatgtcaaagttacctgtct	6	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99514384	T	T	99514384	3	4	9	1	0	0	0	0	1	0	0	0	16638	1348	47	2	1114	2	TRIM4	7	99514384	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	99514384	59624279	8776	16927											
GJC3	349149	broad.mit.edu	37	chr7	99527070	99527070	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaggcagccttgcagccCggctgctgggtgtgacacac	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99527070	A	A	99527070	2	1	9	1	0	0	0	0	0	0	0	1	6480	639	23	1		1	GJC3	7	99527070	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12686	99527070	59611593	8777	16928											
AZGP1	563	broad.mit.edu	37	chr7	99566015	99566015	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccgctgcttctgttattctCgatctcacaaccaaaccttc	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99566015	A	A	99566015	4	1	9	1	0	0	0	0	0	1	0	0	1244	893	31	3	528	3	AZGP1	7	99566015	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38945	99566015	59572648	8778	16929											
AZGP1	563	broad.mit.edu	37	chr7	99573641	99573641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacaggcaccattcttacCattgtgtctgcttggagggt	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99573641	A	A	99573641	3	1	9	1	0	0	0	0	1	0	0	0	1244	594	21	2	909	2	AZGP1	7	99573641	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7626	99573641	59565022	8779	16930											
ZSCAN21	7589	broad.mit.edu	37	chr7	99654599	99654599	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctgccccacagagtccCatctttggtgaggctgtttc	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99654599	A	A	99654599	1	1	9	0	1	0	0	0	0	0	0	0	18362	609	21	2		2	ZSCAN21	7	99654599	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	80958	99654599	59484064	8780	16931											
ZSCAN21	7589	broad.mit.edu	37	chr7	99654658	99654658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtactaggcatggcccCagttctgggccctaggcctc	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99654658	A	A	99654658	3	1	9	1	0	0	0	0	1	0	0	0	18362	594	21	2	31	2	ZSCAN21	7	99654658	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	99654658	59484005	8781	16932											
ZSCAN21	7589	broad.mit.edu	37	chr7	99655394	99655394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaactgcaaaggaatcccCgagcagcatgcagccacagc	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99655394	A	A	99655394	3	1	9	1	0	0	0	0	1	0	0	0	18362	652	23	1	479	1	ZSCAN21	7	99655394	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	736	99655394	59483269	8782	16933											
ZSCAN21	7589	broad.mit.edu	37	chr7	99661842	99661842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtgtggaaaagcttttGggcagagctcagaccttctt	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99661842	T	T	99661842	3	4	9	1	0	0	0	0	1	0	0	0	18362	1348	47	2	1034	2	ZSCAN21	7	99661842	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6448	99661842	59476821	8783	16934											
ZNF3	7551	broad.mit.edu	37	chr7	99672776	99672776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagtgagaacacattccCgtaattctccagcatcacat	5	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99672776	A	A	99672776	3	1	9	1	0	0	0	0	1	0	0	0	17955	652	23	1	1224	1	ZNF3	7	99672776	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10934	99672776	59465887	8784	16935											
ZNF3	7551	broad.mit.edu	37	chr7	99673208	99673208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgccaacatctcatccCccaggctgtccttgtcggaa	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99673208	A	A	99673208	3	1	9	1	0	0	0	0	1	0	0	0	17955	623	22	2	1380	2	ZNF3	7	99673208	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	432	99673208	59465455	8785	16936											
COPS6	10980	broad.mit.edu	37	chr7	99689103	99689103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctctgtgtcactgtctccCggtgctcagcacagacaagt	10	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99689103	A	A	99689103	3	1	9	1	0	0	0	0	1	0	0	0	3769	652	23	1	837	1	COPS6	7	99689103	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15895	99689103	59449560	8786	16937											
MCM7	4176	broad.mit.edu	37	chr7	99695239	99695239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttgtttcttcttacccCggattttcatgcctcgagga	7	13	3	0	rs35654411		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99695239	A	A	99695239	3	1	9	1	0	0	0	0	1	0	0	0	9485	652	23	1	1072	1	MCM7	7	99695239	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6136	99695239	59443424	8787	16938											
AP4M1	9179	broad.mit.edu	37	chr7	99702868	99702868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctctctttccaggttatGggccaggaatccgggtcgat	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99702868	T	T	99702868	3	4	9	1	0	0	0	0	1	0	0	0	755	1348	47	2	771	2	AP4M1	7	99702868	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7629	99702868	59435795	8788	16939											
CNPY4	245812	broad.mit.edu	37	chr7	99722530	99722530	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccttgcctttgagccccCaggaggggaagggatcatgg	15	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99722530	A	A	99722530	1	1	9	0	1	0	0	0	0	0	0	0	3662	609	21	2		2	CNPY4	7	99722530	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	19662	99722530	59416133	8789	16940											
STAG3	10734	broad.mit.edu	37	chr7	99778271	99778271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctaccctttgatgacaGggactcaaaccatacctcag	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99778271	T	T	99778271	3	4	9	1	0	0	0	0	1	0	0	0	15362	1000	35	2	94	2	STAG3	7	99778271	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55741	99778271	59360392	8790	16941											
STAG3	10734	broad.mit.edu	37	chr7	99786088	99786088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttaggcattgtgacccCtgagatgttcaagaagatgt	10	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99786088	A	A	99786088	3	1	9	1	0	0	0	0	1	0	0	0	15362	681	24	2	464	2	STAG3	7	99786088	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7817	99786088	59352575	8791	16942											
STAG3	10734	broad.mit.edu	37	chr7	99786115	99786115	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcaagaagatgtccaactCagagatcatccagcacctaa	7	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99786115	A	A	99786115	4	1	9	1	0	0	0	0	0	1	0	0	15362	838	29	3	491	3	STAG3	7	99786115	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	99786115	59352548	8792	16943											
STAG3	10734	broad.mit.edu	37	chr7	99786440	99786440	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatccttttgtaggactcGggggactaccctctcatagc	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99786440	T	T	99786440	2	4	9	1	0	0	0	0	0	0	0	1	15362	1103	39	1		1	STAG3	7	99786440	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	325	99786440	59352223	8793	16944											
STAG3	10734	broad.mit.edu	37	chr7	99802728	99802728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttcagagttttcccccCgactcttccatcaggacaag	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99802728	A	A	99802728	2	1	9	1	0	0	0	0	0	0	0	1	15362	644	23	1		1	STAG3	7	99802728	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16288	99802728	59335935	8794	16945											
SPDYE3	441272	broad.mit.edu	37	chr7	99913466	99913466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgagggtgtcagacaaGgtaaggttgttctctatgta	13	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99913466	T	T	99913466	3	4	9	1	0	0	0	0	1	0	0	0	15148	1014	35	2	1286	2	SPDYE3	7	99913466	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110738	99913466	59225197	8795	16946											
PILRB	29990	broad.mit.edu	37	chr7	99936428	99936428	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagaaagggtcccaagtGgtacatcgtcatagctggaa	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99936428	T	T	99936428	1	4	9	0	1	0	0	0	0	0	0	0	12021	1363	47	2		2	PILRB	7	99936428	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	22962	99936428	59202235	8796	16947											
PILRB	29990	broad.mit.edu	37	chr7	99956480	99956480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacggggccacttccacGggcagtccttctacagcaca	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99956480	T	T	99956480	3	4	9	1	0	0	0	0	1	0	0	0	12021	1116	39	1	238	1	PILRB	7	99956480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20052	99956480	59182183	8797	16948											
ZCWPW1	55063	broad.mit.edu	37	chr7	99999555	99999555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggccttctttccttccCattctgggtgcaggaggagc	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99999555	A	A	99999555	3	1	9	1	0	0	0	0	1	0	0	0	17723	594	21	2	373	2	ZCWPW1	7	99999555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43075	99999555	59139108	8798	16949											
ZCWPW1	55063	broad.mit.edu	37	chr7	100000006	100000006	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctccccatgacactatGggtgagtgttgcctgttttc	10	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100000006	T	T	100000006	1	4	9	0	1	0	0	0	0	0	0	0	17723	1363	47	2		2	ZCWPW1	7	100000006	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	451	100000006	59138657	8799	16950											
MEPCE	56257	broad.mit.edu	37	chr7	100028652	100028652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttccatctgctctgcaGggtccctcaggctccctatc	7	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100028652	T	T	100028652	3	4	9	1	0	0	0	0	1	0	0	0	9570	991	35	2	1013	2	MEPCE	7	100028652	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28646	100028652	59110011	8800	16951											
MEPCE	56257	broad.mit.edu	37	chr7	100028722	100028722	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccccatcttcctcctccCgacatcgcaaacgtcgcagg	6	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100028722	A	A	100028722	2	1	9	1	0	0	0	0	0	0	0	1	9570	644	23	1		1	MEPCE	7	100028722	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	100028722	59109941	8801	16952											
AGFG2	3268	broad.mit.edu	37	chr7	100146527	100146527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtagtattcctgcaatccCgtggaaatgaggtgagctgc	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100146527	A	A	100146527	3	1	9	1	0	0	0	0	1	0	0	0	381	652	23	1	310	1	AGFG2	7	100146527	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117805	100146527	58992136	8802	16953											
LRCH4	4034	broad.mit.edu	37	chr7	100173282	100173282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatccatgccacatgctcGgctgagtccggcatgccacc	9	17	0	1	rs77589280	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100173282	T	T	100173282	1	4	9	0	1	0	0	0	0	0	0	0	9022	1131	39	1		1	LRCH4	7	100173282	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26755	100173282	58965381	8803	16954											
LRCH4	4034	broad.mit.edu	37	chr7	100173370	100173370	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcttctagaaaactctcCacattcttccgagccttgag	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100173370	A	A	100173370	2	1	9	1	0	0	0	0	0	0	0	1	9022	581	21	2		2	LRCH4	7	100173370	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	100173370	58965293	8804	16955											
PCOLCE	5118	broad.mit.edu	37	chr7	100201056	100201056	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttctgttctccagaccCgtgttcctgtgcggagggga	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100201056	A	A	100201056	2	1	9	1	0	0	0	0	0	0	0	1	11688	639	23	1		1	PCOLCE	7	100201056	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27686	100201056	58937607	8805	16956											
PCOLCE	5118	broad.mit.edu	37	chr7	100205290	100205290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagtgaagtccatggttcGggagccaggggagggccttg	18	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100205290	T	T	100205290	3	4	9	1	0	0	0	0	1	0	0	0	11688	1116	39	1	1073	1	PCOLCE	7	100205290	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4234	100205290	58933373	8806	16957											
MOSPD3	64598	broad.mit.edu	37	chr7	100212540	100212540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctcttcttgctgacgGggattgtgtctgtggccttc	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100212540	T	T	100212540	3	4	9	1	0	0	0	0	1	0	0	0	9811	1232	43	2	576	2	MOSPD3	7	100212540	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7250	100212540	58926123	8807	16958											
TFR2	7036	broad.mit.edu	37	chr7	100226821	100226821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctgccctatcctcctcGggccacaggcccaccgctgc	8	21	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100226821	T	T	100226821	1	4	9	0	1	0	0	0	0	0	0	0	15934	1131	39	1		1	TFR2	7	100226821	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14281	100226821	58911842	8808	16959											
EPO	2056	broad.mit.edu	37	chr7	100319587	100319587	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgtgtgcatttcagacGggctgtgctgaacactgcag	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100319587	T	T	100319587	2	4	9	1	0	0	0	0	0	0	0	1	5230	1103	39	1		1	EPO	7	100319587	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	92766	100319587	58819076	8809	16960											
EPO	2056	broad.mit.edu	37	chr7	100319631	100319631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgagaatatcactgtccCagacaccaaagttaatttct	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100319631	A	A	100319631	3	1	9	1	0	0	0	0	1	0	0	0	5230	594	21	2	216	2	EPO	7	100319631	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	100319631	58819032	8810	16961											
EPO	2056	broad.mit.edu	37	chr7	100320646	100320646	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctcagctgctccactcCgaacaatcactgctgacact	7	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100320646	A	A	100320646	2	1	9	1	0	0	0	0	0	0	0	1	5230	644	23	1		1	EPO	7	100320646	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1015	100320646	58818017	8811	16962											
EPO	2056	broad.mit.edu	37	chr7	100320693	100320693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactcttccgagtctactcCaatttcctccggggaaagct	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100320693	A	A	100320693	2	1	9	1	0	0	0	0	0	0	0	1	5230	581	21	2		2	EPO	7	100320693	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	100320693	58817970	8812	16963											
ZAN	7455	broad.mit.edu	37	chr7	100344278	100344278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttccactacatcctccGgggccagtctcctggtgcag	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100344278	T	T	100344278	3	4	9	1	0	0	0	0	1	0	0	0	17640	1116	39	1	910	1	ZAN	7	100344278	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23585	100344278	58794385	8813	16964											
ZAN	7455	broad.mit.edu	37	chr7	100344373	100344373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgatctgggcgcatctcCcagggttggcttgatgggga	15	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100344373	A	A	100344373	1	1	9	0	1	0	0	0	0	0	0	0	17640	638	22	2		2	ZAN	7	100344373	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	100344373	58794290	8814	16965											
EPHB4	2050	broad.mit.edu	37	chr7	100411207	100411207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcctcccaaagtgctgGgattatagataggagccacc	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100411207	T	T	100411207	1	4	9	0	1	0	0	0	0	0	0	0	5219	1247	43	2		2	EPHB4	7	100411207	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	66834	100411207	58727456	8815	16966											
EPHB4	2050	broad.mit.edu	37	chr7	100411606	100411606	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacccacgactgccgtgccCgcaatcagggccagctgctc	10	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100411606	G	G	100411606	2	3	9	1	0	0	0	0	0	0	0	1	5219	639	23	4		4	EPHB4	7	100411606	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	399	100411606	58727057	8816	16967											
EPHB4	2050	broad.mit.edu	37	chr7	100421841	100421841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctgcccgtccacctgaGggaatgtcacccacttcaga	8	16	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100421841	T	T	100421841	3	4	9	1	0	0	0	0	1	0	0	0	5219	1000	35	2	2920	2	EPHB4	7	100421841	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10235	100421841	58716822	8817	16968											
SLC12A9	56996	broad.mit.edu	37	chr7	100457538	100457538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagactatgggttcttcCgcgccatcagcctgtggccc	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100457538	A	A	100457538	3	1	9	1	0	0	0	0	1	0	0	0	14503	652	23	1	1035	1	SLC12A9	7	100457538	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35697	100457538	58681125	8818	16969											
TRIP6	7205	broad.mit.edu	37	chr7	100466064	100466064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcatttccacaaatgtGggtcttggagtggggtcctt	14	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100466064	T	T	100466064	1	4	9	0	1	0	0	0	0	0	0	0	16684	1363	47	2		2	TRIP6	7	100466064	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8526	100466064	58672599	8819	16970											
SRRT	51593	broad.mit.edu	37	chr7	100481898	100481898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcaggcatctgggcccCatgggggtgggggtgtctgg	22	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100481898	A	A	100481898	1	1	9	0	1	0	0	0	0	0	0	0	15290	609	21	2		2	SRRT	7	100481898	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15834	100481898	58656765	8820	16971											
SRRT	51593	broad.mit.edu	37	chr7	100484650	100484650	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagggcaggagctgaacgctCgcattcacttcccttaggtc	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100484650	A	A	100484650	1	1	9	0	1	0	0	0	0	0	0	0	15290	899	31	3		3	SRRT	7	100484650	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2752	100484650	58654013	8821	16972											
SRRT	51593	broad.mit.edu	37	chr7	100484663	100484663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacgctcgcattcacttccCttaggtcttggacaagctcc	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100484663	A	A	100484663	1	1	9	0	1	0	0	0	0	0	0	0	15290	696	24	2		2	SRRT	7	100484663	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	100484663	58654000	8822	16973											
MUC17	140453	broad.mit.edu	37	chr7	100676175	100676175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgaagccagttcatctcCtccaactgctgaagttaaca	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100676175	A	A	100676175	3	1	9	1	0	0	0	0	1	0	0	0	10068	681	24	2	1488	2	MUC17	7	100676175	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	191512	100676175	58462488	8823	16974											
MUC17	140453	broad.mit.edu	37	chr7	100677624	100677624	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtaccagcataccaacctCgactcctagtgaaggaacga	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100677624	A	A	100677624	4	1	9	1	0	0	0	0	0	1	0	0	10068	893	31	3	2937	3	MUC17	7	100677624	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1449	100677624	58461039	8824	16975											
MUC17	140453	broad.mit.edu	37	chr7	100677735	100677735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttgactccaacactcCtttgaccacttctactgaag	5	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100677735	A	A	100677735	3	1	9	1	0	0	0	0	1	0	0	0	10068	681	24	2	3048	2	MUC17	7	100677735	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111	100677735	58460928	8825	16976											
MUC17	140453	broad.mit.edu	37	chr7	100678356	100678356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggagaaagaagcactcCattaacaagtatgcctgtca	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100678356	A	A	100678356	3	1	9	1	0	0	0	0	1	0	0	0	10068	594	21	2	3669	2	MUC17	7	100678356	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	621	100678356	58460307	8826	16977											
MUC17	140453	broad.mit.edu	37	chr7	100678700	100678700	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctcaacttatagtgaaGgaagaactcctttaacaagt	6	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100678700	T	T	100678700	4	4	9	1	0	0	0	0	0	1	0	0	10068	1001	35	2	4013	2	MUC17	7	100678700	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	344	100678700	58459963	8827	16978											
MUC17	140453	broad.mit.edu	37	chr7	100680822	100680822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctcaactcctagtgaacGgaccactccattagcaggta	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100680822	T	T	100680822	3	4	9	1	0	0	0	0	1	0	0	0	10068	1116	39	1	6135	1	MUC17	7	100680822	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2122	100680822	58457841	8828	16979											
MUC17	140453	broad.mit.edu	37	chr7	100681238	100681238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttctgcaatcagcaccCtttcaacaactcctgttgac	5	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100681238	A	A	100681238	3	1	9	1	0	0	0	0	1	0	0	0	10068	681	24	2	6551	2	MUC17	7	100681238	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	416	100681238	58457425	8829	16980											
MUC17	140453	broad.mit.edu	37	chr7	100681479	100681479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgaagccacttcatctcCtacaactgctgaaggtacca	6	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100681479	A	A	100681479	3	1	9	1	0	0	0	0	1	0	0	0	10068	681	24	2	6792	2	MUC17	7	100681479	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	241	100681479	58457184	8830	16981											
MUC17	140453	broad.mit.edu	37	chr7	100682098	100682098	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctgtcagcaccacgccGgtggtcagttctgaggctgg	14	12	3	1	rs149353906	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100682098	T	T	100682098	2	4	9	1	0	0	0	0	0	0	0	1	10068	1103	39	1		1	MUC17	7	100682098	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	619	100682098	58456565	8831	16982											
MUC17	140453	broad.mit.edu	37	chr7	100682371	100682371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagttcatctgctacatcCgctgaaggtaccagcatgcc	8	13	3	1	rs145837075	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100682371	A	A	100682371	2	1	9	1	0	0	0	0	0	0	0	1	10068	639	23	1		1	MUC17	7	100682371	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	273	100682371	58456292	8832	16983											
MUC17	140453	broad.mit.edu	37	chr7	100682455	100682455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcagcaccaagccgttGgccagttctgaggctagcac	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100682455	T	T	100682455	3	4	9	1	0	0	0	0	1	0	0	0	10068	1339	47	2	7768	2	MUC17	7	100682455	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84	100682455	58456208	8833	16984											
MUC17	140453	broad.mit.edu	37	chr7	100683337	100683337	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacctgtcagcaccacgccGgtggccagttctgaggctag	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100683337	T	T	100683337	2	4	9	1	0	0	0	0	0	0	0	1	10068	1103	39	1		1	MUC17	7	100683337	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	882	100683337	58455326	8834	16985											
MUC17	140453	broad.mit.edu	37	chr7	100684004	100684004	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctcaacttatagtgaaGgaagcactccattaacaggt	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100684004	T	T	100684004	4	4	9	1	0	0	0	0	0	1	0	0	10068	1001	35	2	9317	2	MUC17	7	100684004	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	667	100684004	58454659	8835	16986											
SERPINE1	5054	broad.mit.edu	37	chr7	100778919	100778919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaccccagtggactgcGggggcccctaagaggaaaaa	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100778919	T	T	100778919	1	4	9	0	1	0	0	0	0	0	0	0	14224	1131	39	1		1	SERPINE1	7	100778919	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	94915	100778919	58359744	8836	16987											
MOGAT3	346606	broad.mit.edu	37	chr7	100843555	100843555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagttgtctccaaattgccCggttccttatccactccgaa	6	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100843555	A	A	100843555	3	1	9	1	0	0	0	0	1	0	0	0	9790	652	23	1	797	1	MOGAT3	7	100843555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64636	100843555	58295108	8837	16988											
CUX1	1523	broad.mit.edu	37	chr7	101713706	101713706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacgtcccaggtaagcccCggcagtaatggcccaccagt	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101713706	A	A	101713706	1	1	9	0	1	0	0	0	0	0	0	0	4097	667	23	1		1	CUX1	7	101713706	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	870151	101713706	57424957	8838	16989											
SPDYE6	729597	broad.mit.edu	37	chr7	101989020	101989020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactggaaccaacgcttacGgagcaagggtatgcgagagc	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101989020	T	T	101989020	3	4	9	1	0	0	0	0	1	0	0	0	15151	1116	39	1	363	1	SPDYE6	7	101989020	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	275314	101989020	57149643	8839	16990											
SPDYE6	729597	broad.mit.edu	37	chr7	101991219	101991219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggaggggaagccagccCggctgaaatacgctatgacc	14	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101991219	A	A	101991219	3	1	9	1	0	0	0	0	1	0	0	0	15151	652	23	1	516	1	SPDYE6	7	101991219	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2199	101991219	57147444	8840	16991											
NAPEPLD	222236	broad.mit.edu	37	chr7	102755560	102755560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatagatttctttgtttGgacatcagtgtgaatcctta	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102755560	T	T	102755560	3	4	9	1	0	0	0	0	1	0	0	0	10257	1357	47	2	186	2	NAPEPLD	7	102755560	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	764341	102755560	56383103	8841	16992											
NAPEPLD	222236	broad.mit.edu	37	chr7	102760248	102760248	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgaccttatcatgtccGgggacacaattctcctccca	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102760248	T	T	102760248	2	4	9	1	0	0	0	0	0	0	0	1	10257	1103	39	1		1	NAPEPLD	7	102760248	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4688	102760248	56378415	8842	16993											
NAPEPLD	222236	broad.mit.edu	37	chr7	102760459	102760459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttcacttattgtgcacGgggaacgacgaaatcgcttt	12	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102760459	T	T	102760459	3	4	9	1	0	0	0	0	1	0	0	0	10257	1116	39	1	687	1	NAPEPLD	7	102760459	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	211	102760459	56378204	8843	16994											
PMPCB	9512	broad.mit.edu	37	chr7	102939027	102939027	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccagtcattatattttGgagagaacagattaagaagt	8	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102939027	T	T	102939027	4	4	9	1	0	0	0	0	0	1	0	0	12236	1349	47	2	118	2	PMPCB	7	102939027	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178568	102939027	56199636	8844	16995											
DNAJC2	27000	broad.mit.edu	37	chr7	102963026	102963026	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttctgcttctttcttggCtttttcttcttccttgaact	4	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102963026	T	T	102963026	3	4	9	1	0	0	0	0	1	0	0	0	4679	797	28	4	1036	4	DNAJC2	7	102963026	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23999	102963026	56175637	8845	16996											
SLC26A5	375611	broad.mit.edu	37	chr7	102993327	102993327	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaactgcttggattacacGgcatttcccctacggtctcc	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102993327	T	T	102993327	1	4	9	0	1	0	0	0	0	0	0	0	14634	1131	39	1		1	SLC26A5	7	102993327	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	30301	102993327	56145336	8846	16997											
SLC26A5	375611	broad.mit.edu	37	chr7	102993341	102993341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacacggcatttcccctacGgtctccatcttctggtcatc	6	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102993341	T	T	102993341	3	4	9	1	0	0	0	0	1	0	0	0	14634	1116	39	1	7	1	SLC26A5	7	102993341	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	102993341	56145322	8847	16998											
PSMC2	5701	broad.mit.edu	37	chr7	103004678	103004678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaagacactctgtgcgcGggcagttgctaatcggactg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103004678	T	T	103004678	3	4	9	1	0	0	0	0	1	0	0	0	12792	1116	39	1	710	1	PSMC2	7	103004678	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11337	103004678	56133985	8848	16999											
SLC26A5	375611	broad.mit.edu	37	chr7	103014985	103014985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtggaacagcagctccCatagggcaggattttcaaaa	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103014985	A	A	103014985	3	1	9	1	0	0	0	0	1	0	0	0	14634	595	21	2	183	2	SLC26A5	7	103014985	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10307	103014985	56123678	8849	17000											
SLC26A5	375611	broad.mit.edu	37	chr7	103018987	103018987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctcccatgatgactgctGggttcactccagtctttaca	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103018987	T	T	103018987	3	4	9	1	0	0	0	0	1	0	0	0	14634	1348	47	2	600	2	SLC26A5	7	103018987	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4002	103018987	56119676	8850	17001											
SLC26A5	375611	broad.mit.edu	37	chr7	103030939	103030939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaatcattaatgaggcCaaacaacctgcaagctgaat	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103030939	A	A	103030939	3	1	9	1	0	0	0	0	1	0	0	0	14634	593	21	2	1063	2	SLC26A5	7	103030939	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11952	103030939	56107724	8851	17002											
RELN	5649	broad.mit.edu	37	chr7	103124272	103124272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccgtctgcgacatgctccCaatttgcaaaacaaacatga	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103124272	A	A	103124272	3	1	9	1	0	0	0	0	1	0	0	0	13328	594	21	2	389	2	RELN	7	103124272	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93333	103124272	56014391	8852	17003											
RELN	5649	broad.mit.edu	37	chr7	103205689	103205689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattaagtgacaggcaccCaaagttctgacatgtagcca	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103205689	A	A	103205689	1	1	9	0	1	0	0	0	0	0	0	0	13328	609	21	2		2	RELN	7	103205689	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	81417	103205689	55932974	8853	17004											
RELN	5649	broad.mit.edu	37	chr7	103214570	103214570	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtccagagggaccgtccGggcttcccttttcccagggc	14	14	0	1	rs140263617		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103214570	T	T	103214570	2	4	9	1	0	0	0	0	0	0	0	1	13328	1115	39	1		1	RELN	7	103214570	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8881	103214570	55924093	8854	17005											
RELN	5649	broad.mit.edu	37	chr7	103234768	103234768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcagacataggagaatacCtgaggtaaagttggattgat	12	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103234768	A	A	103234768	3	1	9	1	0	0	0	0	1	0	0	0	13328	695	24	2	6831	2	RELN	7	103234768	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20198	103234768	55903895	8855	17006											
MLL5	55904	broad.mit.edu	37	chr7	104748304	104748304	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggcttgtatctggtttcGgacggactgttaatgacaat	12	6	1	1	rs148285085		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104748304	T	T	104748304	4	4	9	1	0	0	0	0	0	1	0	0	9717	1117	39	1	3478	1	MLL5	7	104748304	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1513536	104748304	54390359	8856	17007											
MLL5	55904	broad.mit.edu	37	chr7	104750900	104750900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctctaatgttctctttGggtctgctctgcttcatctc	8	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104750900	T	T	104750900	1	4	9	0	1	0	0	0	0	0	0	0	9717	1363	47	2		2	MLL5	7	104750900	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2596	104750900	54387763	8857	17008											
PUS7	54517	broad.mit.edu	37	chr7	105111197	105111197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcctcgaagcagctgccCttccacacaccttttgacag	7	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105111197	A	A	105111197	3	1	9	1	0	0	0	0	1	0	0	0	12941	681	24	2	673	2	PUS7	7	105111197	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	360297	105111197	54027466	8858	17009											
PUS7	54517	broad.mit.edu	37	chr7	105135639	105135639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatggtgtctttgttttcCttatatagtacgaagtggca	9	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105135639	A	A	105135639	3	1	9	1	0	0	0	0	1	0	0	0	12941	680	24	2	1237	2	PUS7	7	105135639	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24442	105135639	54003024	8859	17010											
PUS7	54517	broad.mit.edu	37	chr7	105148739	105148739	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcttccaactgagcctcaGaattctttccacctttccca	3	16	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105148739	T	T	105148739	3	4	9	1	0	0	0	0	1	0	0	0	12941	942	33	3	1824	3	PUS7	7	105148739	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13100	105148739	53989924	8860	17011											
RINT1	60561	broad.mit.edu	37	chr7	105195407	105195407	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcactgaagcaggacagtaGggaaaacttataactatatc	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105195407	C	C	105195407	1	2	9	0	1	0	0	0	0	0	0	0	13487	1015	35	4		4	RINT1	7	105195407	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46668	105195407	53943256	8861	17012											
RINT1	60561	broad.mit.edu	37	chr7	105195597	105195597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagagactagagcttccCttggctttcgatactgtgca	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105195597	A	A	105195597	3	1	9	1	0	0	0	0	1	0	0	0	13487	681	24	2	1636	2	RINT1	7	105195597	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	190	105195597	53943066	8862	17013											
ATXN7L1	222255	broad.mit.edu	37	chr7	105516294	105516294	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataacctccctgctttttcCaccctcttttccagcctctt	2	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105516294	A	A	105516294	4	1	9	1	0	0	0	0	0	1	0	0	1220	603	21	2	2508	2	ATXN7L1	7	105516294	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	320697	105516294	53622369	8863	17014											
CDHR3	222256	broad.mit.edu	37	chr7	105662862	105662862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtattaaagtcattcccCacccaaccactatcatcacc	3	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105662862	A	A	105662862	3	1	9	1	0	0	0	0	1	0	0	0	3150	594	21	2	2098	2	CDHR3	7	105662862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146568	105662862	53475801	8864	17015											
COG5	10466	broad.mit.edu	37	chr7	106871078	106871078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaatgatctcagcatcCgataggactttcctaaatca	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106871078	A	A	106871078	3	1	9	1	0	0	0	0	1	0	0	0	3693	652	23	1	359	1	COG5	7	106871078	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1208216	106871078	52267585	8865	17016											
COG5	10466	broad.mit.edu	37	chr7	106871105	106871105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttcctaaatcagatactCgtctacagaatggacccaca	5	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106871105	A	A	106871105	3	1	9	1	0	0	0	0	1	0	0	0	3693	884	31	3	386	3	COG5	7	106871105	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	106871105	52267558	8866	17017											
BCAP29	55973	broad.mit.edu	37	chr7	107262441	107262441	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttactctttaacaccactcCgtcttccccattagccattt	3	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107262441	A	A	107262441	1	1	9	0	1	0	0	0	0	0	0	0	1351	667	23	1		1	BCAP29	7	107262441	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	391336	107262441	51876222	8867	17018											
SLC26A4	5172	broad.mit.edu	37	chr7	107314591	107314591	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taataactgattaattgttaGagactttttttccccaggac	6	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107314591	T	T	107314591	1	4	9	0	1	0	0	0	0	0	0	0	14633	957	33	3		3	SLC26A4	7	107314591	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52150	107314591	51824072	8868	17019											
SLC26A4	5172	broad.mit.edu	37	chr7	107336385	107336385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttccctaggttatctGggtgtttacgtgtatagtgt	10	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107336385	T	T	107336385	3	4	9	1	0	0	0	0	1	0	0	0	14633	1357	47	2	1491	2	SLC26A4	7	107336385	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21794	107336385	51802278	8869	17020											
SLC26A4	5172	broad.mit.edu	37	chr7	107336502	107336502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtgagtaacgtaaaaccCagatttcctataaacagaac	7	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107336502	A	A	107336502	1	1	9	0	1	0	0	0	0	0	0	0	14633	609	21	2		2	SLC26A4	7	107336502	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	107336502	51802161	8870	17021											
SLC26A4	5172	broad.mit.edu	37	chr7	107336547	107336547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctgagcttccttatacCattttgataaatatagtgaa	5	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107336547	A	A	107336547	1	1	9	0	1	0	0	0	0	0	0	0	14633	609	21	2		2	SLC26A4	7	107336547	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	107336547	51802116	8871	17022											
SLC26A4	5172	broad.mit.edu	37	chr7	107355896	107355896	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacttgcatcctgaaagtGggttcgggaggtctctatga	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107355896	T	T	107355896	1	4	9	0	1	0	0	0	0	0	0	0	14633	1363	47	2		2	SLC26A4	7	107355896	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	19349	107355896	51782767	8872	17023											
SLC26A3	1811	broad.mit.edu	37	chr7	107406241	107406241	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacttatcaataactttctGggtataaagttgtttttatg	7	4	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107406241	T	T	107406241	1	4	9	0	1	0	0	0	0	0	0	0	14632	1363	47	2		2	SLC26A3	7	107406241	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	50345	107406241	51732422	8873	17024											
DLD	1738	broad.mit.edu	37	chr7	107542248	107542248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgctattaaagctgccCagttaggcttcaaggtaagg	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107542248	A	A	107542248	3	1	9	1	0	0	0	0	1	0	0	0	4591	595	21	2	194	2	DLD	7	107542248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136007	107542248	51596415	8874	17025											
DLD	1738	broad.mit.edu	37	chr7	107557362	107557362	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaattgaactagatccCagaggtagaattccagtcaa	10	8	1	4	rs1049283		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107557362	A	A	107557362	2	1	9	1	0	0	0	0	0	0	0	1	4591	581	21	2		2	DLD	7	107557362	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15114	107557362	51581301	8875	17026											
LAMB1	3912	broad.mit.edu	37	chr7	107564672	107564672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcctgtgtgaaaagaccCacctttgagcagttgcagct	10	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107564672	A	A	107564672	1	1	9	0	1	0	0	0	0	0	0	0	8682	609	21	2		2	LAMB1	7	107564672	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7310	107564672	51573991	8876	17027											
LAMB1	3912	broad.mit.edu	37	chr7	107569509	107569509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgattgtgtatgcctacCgaagttaacaggttctgggt	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107569509	A	A	107569509	2	1	9	1	0	0	0	0	0	0	0	1	8682	666	23	1		1	LAMB1	7	107569509	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4837	107569509	51569154	8877	17028											
LAMB1	3912	broad.mit.edu	37	chr7	107580481	107580481	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcagtggctctgctgcGgggctctgcgccaggatgtc	14	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107580481	T	T	107580481	2	4	9	1	0	0	0	0	0	0	0	1	8682	1103	39	1		1	LAMB1	7	107580481	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10972	107580481	51558182	8878	17029											
LAMB1	3912	broad.mit.edu	37	chr7	107580685	107580685	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagtcagggaagaccccCgagtaccctcgcgtgcactt	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107580685	A	A	107580685	2	1	9	1	0	0	0	0	0	0	0	1	8682	639	23	1		1	LAMB1	7	107580685	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	204	107580685	51557978	8879	17030											
LAMB1	3912	broad.mit.edu	37	chr7	107603383	107603383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaattaggatgtcgtactcCatggaatatggtatgttgtc	11	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107603383	A	A	107603383	3	1	9	1	0	0	0	0	1	0	0	0	8682	594	21	2	3616	2	LAMB1	7	107603383	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22698	107603383	51535280	8880	17031											
LAMB1	3912	broad.mit.edu	37	chr7	107605018	107605018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccaagttggcttcctcCgcttcatagaggtagtgatc	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107605018	A	A	107605018	2	1	9	1	0	0	0	0	0	0	0	1	8682	639	23	1		1	LAMB1	7	107605018	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1635	107605018	51533645	8881	17032											
LAMB4	22798	broad.mit.edu	37	chr7	107688550	107688550	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacatttcctggatctcCgcacaccttgcaagagaaat	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107688550	A	A	107688550	4	1	9	1	0	0	0	0	0	1	0	0	8685	661	23	1	1184	1	LAMB4	7	107688550	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83532	107688550	51450113	8882	17033											
LAMB4	22798	broad.mit.edu	37	chr7	107710212	107710212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcctttcacaggcacccGggagcacttgaggtcccatt	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107710212	T	T	107710212	3	4	9	1	0	0	0	0	1	0	0	0	8685	1116	39	1	3110	1	LAMB4	7	107710212	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21662	107710212	51428451	8883	17034											
LAMB4	22798	broad.mit.edu	37	chr7	107717342	107717342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttaaaagtagttataacGgtgcttagtagcgaagaaag	11	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107717342	T	T	107717342	1	4	9	0	1	0	0	0	0	0	0	0	8685	1131	39	1		1	LAMB4	7	107717342	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7130	107717342	51421321	8884	17035											
LAMB4	22798	broad.mit.edu	37	chr7	107717378	107717378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcacccacaaaactctGtgatacttacagagtccacc	6	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107717378	T	T	107717378	1	4	9	0	1	0	0	0	0	0	0	0	8685	1392	48	3		3	LAMB4	7	107717378	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	107717378	51421285	8885	17036											
LAMB4	22798	broad.mit.edu	37	chr7	107720171	107720171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccatgtaacagggttccCaggaactggctctcctaaaa	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107720171	A	A	107720171	3	1	9	1	0	0	0	0	1	0	0	0	8685	594	21	2	3603	2	LAMB4	7	107720171	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2793	107720171	51418492	8886	17037											
LAMB4	22798	broad.mit.edu	37	chr7	107752345	107752345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgttgggttggtcatacGgatcatatggaaatctagag	14	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107752345	T	T	107752345	3	4	9	1	0	0	0	0	1	0	0	0	8685	1116	39	1	5170	1	LAMB4	7	107752345	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32174	107752345	51386318	8887	17038											
NRCAM	4897	broad.mit.edu	37	chr7	107880467	107880467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcaggggcactctgccCgcagataagcgcttcttttt	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107880467	A	A	107880467	2	1	9	1	0	0	0	0	0	0	0	1	10739	639	23	1		1	NRCAM	7	107880467	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	128122	107880467	51258196	8888	17039											
PNPLA8	50640	broad.mit.edu	37	chr7	108119728	108119728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcataacgtccagtgccCagggatactatgcactctaa	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108119728	A	A	108119728	2	1	9	1	0	0	0	0	0	0	0	1	12266	581	21	2		2	PNPLA8	7	108119728	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	239261	108119728	51018935	8889	17040											
PNPLA8	50640	broad.mit.edu	37	chr7	108154667	108154667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctagtaatgcagagctttGggtcagttgttcttcttaat	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108154667	T	T	108154667	3	4	9	1	0	0	0	0	1	0	0	0	12266	1348	47	2	1253	2	PNPLA8	7	108154667	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34939	108154667	50983996	8890	17041											
DOCK4	9732	broad.mit.edu	37	chr7	111400268	111400268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggaagatggtctcatcGggctggttggcgtgctgcat	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111400268	T	T	111400268	2	4	9	1	0	0	0	0	0	0	0	1	4729	1103	39	1		1	DOCK4	7	111400268	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3245601	111400268	47738395	8891	17042											
DOCK4	9732	broad.mit.edu	37	chr7	111487007	111487007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactattacaagtttatttcCagaagccatttgaagggagc	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111487007	T	T	111487007	1	4	9	0	1	0	0	0	0	0	0	0	4729	609	21	4		4	DOCK4	7	111487007	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	86739	111487007	47651656	8892	17043											
DOCK4	9732	broad.mit.edu	37	chr7	111535745	111535745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagggacaaaagaaaaccCaaacaacttcttctctcctt	5	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111535745	A	A	111535745	3	1	9	1	0	0	0	0	1	0	0	0	4729	594	21	2	4538	2	DOCK4	7	111535745	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48738	111535745	47602918	8893	17044											
ZNF277	11179	broad.mit.edu	37	chr7	111846878	111846878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggtgagtacggtgcccCggaggcgcggctgatgtgtc	20	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111846878	A	A	111846878	1	1	9	0	1	0	0	0	0	0	0	0	17938	667	23	1		1	ZNF277	7	111846878	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	311133	111846878	47291785	8894	17045											
IFRD1	3475	broad.mit.edu	37	chr7	112112791	112112791	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagctataatgtttaatactGagccataccacctttttctt	5	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112112791	T	T	112112791	1	4	9	0	1	0	0	0	0	0	0	0	7623	1305	45	3		3	IFRD1	7	112112791	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	265913	112112791	47025872	8895	17046											
TMEM168	64418	broad.mit.edu	37	chr7	112423843	112423843	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaatggcgcatccctttGgatgccatgattctatcaag	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112423843	T	T	112423843	2	4	9	1	0	0	0	0	0	0	0	1	16206	1335	47	2		2	TMEM168	7	112423843	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	311052	112423843	46714820	8896	17047											
TMEM168	64418	broad.mit.edu	37	chr7	112423931	112423931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatttggtatggaatcccCaaagagttaaaagaaaaata	7	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112423931	A	A	112423931	3	1	9	1	0	0	0	0	1	0	0	0	16206	595	21	2	1159	2	TMEM168	7	112423931	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	112423931	46714732	8897	17048											
PPP1R3A	5506	broad.mit.edu	37	chr7	113517733	113517733	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaccaatccaaatgtttGgggttaaatagcttatcttt	6	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113517733	T	T	113517733	1	4	9	0	1	0	0	0	0	0	0	0	12472	1363	47	2		2	PPP1R3A	7	113517733	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1093802	113517733	45620930	8898	17049											
PPP1R3A	5506	broad.mit.edu	37	chr7	113519424	113519424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatctgctgtgattgcccGggtggggattgcggtatgtt	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113519424	T	T	113519424	2	4	9	1	0	0	0	0	0	0	0	1	12472	1115	39	1		1	PPP1R3A	7	113519424	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1691	113519424	45619239	8899	17050											
PPP1R3A	5506	broad.mit.edu	37	chr7	113519998	113519998	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaaaatctccctttacGgagctttctgctgatgaact	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113519998	T	T	113519998	2	4	9	1	0	0	0	0	0	0	0	1	12472	1103	39	1		1	PPP1R3A	7	113519998	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	574	113519998	45618665	8900	17051											
FOXP2	93986	broad.mit.edu	37	chr7	114304371	114304371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acctttgctaagtaatcctgGactgataaataatgcatcca	6	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114304371	T	T	114304371	3	4	9	1	0	0	0	0	1	0	0	0	6087	1174	41	3	2108	3	FOXP2	7	114304371	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	784373	114304371	44834292	8901	17052											
TFEC	22797	broad.mit.edu	37	chr7	115582012	115582012	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctgtgttccaattctcGggctctctgttgttcttttt	8	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115582012	T	T	115582012	2	4	9	1	0	0	0	0	0	0	0	1	15925	1124	39	1		1	TFEC	7	115582012	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1277641	115582012	43556651	8902	17053											
TFEC	22797	broad.mit.edu	37	chr7	115624368	115624368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctagtaacttggtgagtGggttttctgtgaggccagca	14	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115624368	T	T	115624368	3	4	9	1	0	0	0	0	1	0	0	0	15925	1348	47	2	943	2	TFEC	7	115624368	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42356	115624368	43514295	8903	17054											
MET	4233	broad.mit.edu	37	chr7	116339606	116339606	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catactgctgacatacagtcGgaggttcactgcatattctc	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116339606	T	T	116339606	2	4	9	1	0	0	0	0	0	0	0	1	9578	1103	39	1		1	MET	7	116339606	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	715238	116339606	42799057	8904	17055											
MET	4233	broad.mit.edu	37	chr7	116340357	116340357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaagtcacatcagttccCcacttataaactgtgaggta	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116340357	A	A	116340357	1	1	9	0	1	0	0	0	0	0	0	0	9578	638	22	2		2	MET	7	116340357	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	751	116340357	42798306	8905	17056											
MET	4233	broad.mit.edu	37	chr7	116380182	116380182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatagacgtggtttttccCaaatgcatatttacaaccag	6	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116380182	A	A	116380182	1	1	9	0	1	0	0	0	0	0	0	0	9578	609	21	2		2	MET	7	116380182	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39825	116380182	42758481	8906	17057											
MET	4233	broad.mit.edu	37	chr7	116417442	116417442	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttctttcttttgcacaGggcattttggttgtgtatat	9	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116417442	T	T	116417442	5	4	9	1	0	0	0	0	0	0	1	0	9578	1014	35	2	3371	2	MET	7	116417442	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	37260	116417442	42721221	8907	17058											
CAPZA2	830	broad.mit.edu	37	chr7	116528151	116528151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcagaagcctgtgatatGgaacatttatatctttcttt	7	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116528151	T	T	116528151	1	4	9	0	1	0	0	0	0	0	0	0	2667	1363	47	2		2	CAPZA2	7	116528151	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	110709	116528151	42610512	8908	17059											
ST7	7982	broad.mit.edu	37	chr7	116869770	116869770	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggtttgttttatagtcttGaacaaggtttctgctgactt	10	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116869770	T	T	116869770	1	4	9	0	1	0	0	0	0	0	0	0	15347	1305	45	3		3	ST7	7	116869770	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	341619	116869770	42268893	8909	17060											
WNT2	7472	broad.mit.edu	37	chr7	116918172	116918172	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagatccaatggagtccTtgtagaagggaaggtggatg	15	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116918172	C	C	116918172	1	2	9	0	1	0	0	0	0	0	0	0	17513	1624	56	5		5	WNT2	7	116918172	3'UTR	SNP	T	TCGA-05-4396-01A-21D-1855-08	48402	116918172	42220491	8910	17061											
WNT2	7472	broad.mit.edu	37	chr7	116937891	116937891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacatgagccgctcacccCgtggcacttgcactcttgtt	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116937891	A	A	116937891	3	1	9	1	0	0	0	0	1	0	0	0	17513	652	23	1	462	1	WNT2	7	116937891	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19719	116937891	42200772	8911	17062											
ASZ1	136991	broad.mit.edu	37	chr7	117021040	117021040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacatcaaacaatgtatcGggaatttttgaaattgatac	6	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117021040	T	T	117021040	1	4	9	0	1	0	0	0	0	0	0	0	1073	1131	39	1		1	ASZ1	7	117021040	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	83149	117021040	42117623	8912	17063											
ASZ1	136991	broad.mit.edu	37	chr7	117062332	117062332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctctgtccaaaaggaccCgaaccagctctgcattggca	8	15	2	0	rs140466585	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117062332	A	A	117062332	3	1	9	1	0	0	0	0	1	0	0	0	1073	652	23	1	1184	1	ASZ1	7	117062332	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41292	117062332	42076331	8913	17064											
ASZ1	136991	broad.mit.edu	37	chr7	117066878	117066878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcagatgaaactgtccCttatctctcaccagaatcta	6	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117066878	A	A	117066878	1	1	9	0	1	0	0	0	0	0	0	0	1073	696	24	2		2	ASZ1	7	117066878	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4546	117066878	42071785	8914	17065											
CFTR	1080	broad.mit.edu	37	chr7	117149068	117149068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgcaacttattggtccCactttttattcttttgcaga	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117149068	A	A	117149068	1	1	9	0	1	0	0	0	0	0	0	0	3324	609	21	2		2	CFTR	7	117149068	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	82190	117149068	41989595	8915	17066											
CFTR	1080	broad.mit.edu	37	chr7	117230557	117230557	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaagacagactgtccCatcatagattgcattttacc	6	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117230557	A	A	117230557	1	1	9	0	1	0	0	0	0	0	0	0	3324	609	21	2		2	CFTR	7	117230557	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	81489	117230557	41908106	8916	17067											
CFTR	1080	broad.mit.edu	37	chr7	117246826	117246826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtatgtaaaaataagtacCgttaagtatgtctgtattat	8	3	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117246826	A	A	117246826	1	1	9	0	1	0	0	0	0	0	0	0	3324	667	23	1		1	CFTR	7	117246826	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16269	117246826	41891837	8917	17068											
CFTR	1080	broad.mit.edu	37	chr7	117267710	117267710	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcacacgtgaagaaagaTgacatctggccctcaggggg	12	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117267710	A	A	117267710	3	1	9	1	0	0	0	0	1	0	0	0	3324	1461	51	5	3689	5	CFTR	7	117267710	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	20884	117267710	41870953	8918	17069											
CTTNBP2	83992	broad.mit.edu	37	chr7	117375073	117375073	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctgctgcaccagcaagtcgGagccctggagacaggccttg	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117375073	C	C	117375073	3	2	9	1	0	0	0	0	1	0	0	0	4079	1174	41	4	1253	4	CTTNBP2	7	117375073	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107363	117375073	41763590	8919	17070											
CTTNBP2	83992	broad.mit.edu	37	chr7	117407203	117407203	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttctggctcaagccctcCgtgcctacacaagatttcta	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117407203	A	A	117407203	4	1	9	1	0	0	0	0	0	1	0	0	4079	661	23	1	2245	1	CTTNBP2	7	117407203	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32130	117407203	41731460	8920	17071											
CTTNBP2	83992	broad.mit.edu	37	chr7	117423037	117423037	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggattttaatagaaagcCatgtaaattccccatttgga	7	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117423037	T	T	117423037	1	4	9	0	1	0	0	0	0	0	0	0	4079	609	21	4		4	CTTNBP2	7	117423037	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15834	117423037	41715626	8921	17072											
CTTNBP2	83992	broad.mit.edu	37	chr7	117431770	117431770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaatcttgacagtgcttGggtcacagtattccgagcta	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117431770	T	T	117431770	3	4	9	1	0	0	0	0	1	0	0	0	4079	1357	47	2	3591	2	CTTNBP2	7	117431770	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8733	117431770	41706893	8922	17073											
CTTNBP2	83992	broad.mit.edu	37	chr7	117450855	117450855	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcagcagccagctgtgcGgacatcctttcttgcatttt	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117450855	T	T	117450855	2	4	9	1	0	0	0	0	0	0	0	1	4079	1103	39	1		1	CTTNBP2	7	117450855	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19085	117450855	41687808	8923	17074											
KCND2	3751	broad.mit.edu	37	chr7	119914695	119914695	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaagtaatcatggcggcGggggtggcagcgtggctgcc	17	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119914695	T	T	119914695	2	4	9	1	0	0	0	0	0	0	0	1	8089	1103	39	1		1	KCND2	7	119914695	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2463840	119914695	39223968	8924	17075											
KCND2	3751	broad.mit.edu	37	chr7	119914837	119914837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaatgtgagtggcaccCgcttccagacgtggcaggac	14	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119914837	A	A	119914837	3	1	9	1	0	0	0	0	1	0	0	0	8089	652	23	1	153	1	KCND2	7	119914837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	142	119914837	39223826	8925	17076											
KCND2	3751	broad.mit.edu	37	chr7	119914984	119914984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacatcctgaatttctacCgcactgggaagctccactat	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119914984	A	A	119914984	3	1	9	1	0	0	0	0	1	0	0	0	8089	652	23	1	300	1	KCND2	7	119914984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147	119914984	39223679	8926	17077											
KCND2	3751	broad.mit.edu	37	chr7	119915573	119915573	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcacactccgagtcttccGggtcttcaggatctttaagt	9	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119915573	T	T	119915573	3	4	9	1	0	0	0	0	1	0	0	0	8089	1116	39	1	889	1	KCND2	7	119915573	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	589	119915573	39223090	8927	17078											
TSPAN12	23554	broad.mit.edu	37	chr7	120478922	120478922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaacagcaatcatgaccGgatgaaccacaggaaagtaa	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120478922	T	T	120478922	3	4	9	1	0	0	0	0	1	0	0	0	16761	1116	39	1	743	1	TSPAN12	7	120478922	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	563349	120478922	38659741	8928	17079											
C7orf58	79974	broad.mit.edu	37	chr7	120737811	120737811	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggaatgcaattaaagccGagtacttcgagtcacctttt	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120737811	T	T	120737811	2	4	9	1	0	0	0	0	0	0	0	1	2430	1045	37	3		3	C7orf58	7	120737811	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	258889	120737811	38400852	8929	17080											
C7orf58	79974	broad.mit.edu	37	chr7	120764298	120764298	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacaagtagagataacctaGaacaatccttcaaattggtc	7	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120764298	A	A	120764298	1	1	9	0	1	0	0	0	0	0	0	0	2430	957	33	4		4	C7orf58	7	120764298	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26487	120764298	38374365	8930	17081											
PTPRZ1	5803	broad.mit.edu	37	chr7	121568213	121568213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttcttttttatagattGggctaatggatactacagac	8	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121568213	T	T	121568213	3	4	9	1	0	0	0	0	1	0	0	0	12922	1357	47	2	68	2	PTPRZ1	7	121568213	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	803915	121568213	37570450	8931	17082											
AASS	10157	broad.mit.edu	37	chr7	121717923	121717923	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attttggctgccatggcggtGggtaaccccacggttttagc	13	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121717923	C	C	121717923	2	2	9	1	0	0	0	0	0	0	0	1	24	1335	47	4		4	AASS	7	121717923	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	149710	121717923	37420740	8932	17083											
AASS	10157	broad.mit.edu	37	chr7	121721542	121721542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagatagaacgtaattcGgagtcactcacccaggtgag	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121721542	T	T	121721542	1	4	9	0	1	0	0	0	0	0	0	0	24	1131	39	1		1	AASS	7	121721542	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3619	121721542	37417121	8933	17084											
AASS	10157	broad.mit.edu	37	chr7	121756990	121756990	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacatattcacaaggtagctCattaaagattgcttgggctc	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121756990	A	A	121756990	4	1	9	1	0	0	0	0	0	1	0	0	24	835	29	3	2143	3	AASS	7	121756990	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35448	121756990	37381673	8934	17085											
AASS	10157	broad.mit.edu	37	chr7	121766402	121766402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagccaatttaggaagtGggtgatgtaagccctggcat	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121766402	T	T	121766402	1	4	9	0	1	0	0	0	0	0	0	0	24	1363	47	2		2	AASS	7	121766402	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9412	121766402	37372261	8935	17086											
AASS	10157	broad.mit.edu	37	chr7	121766464	121766464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtccaaatgccactaccCgtactcctctatgatccacc	4	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121766464	A	A	121766464	3	1	9	1	0	0	0	0	1	0	0	0	24	652	23	1	2427	1	AASS	7	121766464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	121766464	37372199	8936	17087											
FEZF1	389549	broad.mit.edu	37	chr7	121942916	121942916	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtagcccgcgtgtattcGggtatgagtgtttaaagtgg	14	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121942916	T	T	121942916	2	4	9	1	0	0	0	0	0	0	0	1	5882	1124	39	1		1	FEZF1	7	121942916	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	176452	121942916	37195747	8937	17088											
FEZF1	389549	broad.mit.edu	37	chr7	121943754	121943754	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagcctcggctgaaatcCgaggttttgaacgcgatttt	13	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121943754	A	A	121943754	2	1	9	1	0	0	0	0	0	0	0	1	5882	639	23	1		1	FEZF1	7	121943754	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	838	121943754	37194909	8938	17089											
CADPS2	93664	broad.mit.edu	37	chr7	122130294	122130294	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaagattacagtatctcCttctttaacagcattaaaga	6	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122130294	A	A	122130294	4	1	9	1	0	0	0	0	0	1	0	0	2597	690	24	2	2321	2	CADPS2	7	122130294	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	186540	122130294	37008369	8939	17090											
RNF148	378925	broad.mit.edu	37	chr7	122342308	122342308	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catagactcctttctgaatcGagtgcaaaatttccatgcct	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122342308	T	T	122342308	4	4	9	1	0	0	0	0	0	1	0	0	13560	1059	37	3	424	3	RNF148	7	122342308	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	212014	122342308	36796355	8940	17091											
SLC13A1	6561	broad.mit.edu	37	chr7	122765664	122765664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagtcagtgtcttagctGggataagaaagaatagcagc	11	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122765664	T	T	122765664	3	4	9	1	0	0	0	0	1	0	0	0	14504	1348	47	2	608	2	SLC13A1	7	122765664	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	423356	122765664	36372999	8941	17092											
SLC13A1	6561	broad.mit.edu	37	chr7	122821047	122821047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttagaaggcatgatccCaaacatgggtaacattaaac	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122821047	A	A	122821047	3	1	9	1	0	0	0	0	1	0	0	0	14504	594	21	2	1635	2	SLC13A1	7	122821047	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55383	122821047	36317616	8942	17093											
ASB15	142685	broad.mit.edu	37	chr7	123254506	123254506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttactctatgtactgttttGggccatttcttgataataag	7	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123254506	T	T	123254506	1	4	9	0	1	0	0	0	0	0	0	0	1023	1363	47	2		2	ASB15	7	123254506	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	433459	123254506	35884157	8943	17094											
ASB15	142685	broad.mit.edu	37	chr7	123254677	123254677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaggtagtattcaaacCaactatcctcagcaaaattt	5	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123254677	A	A	123254677	1	1	9	0	1	0	0	0	0	0	0	0	1023	609	21	2		2	ASB15	7	123254677	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	171	123254677	35883986	8944	17095											
ASB15	142685	broad.mit.edu	37	chr7	123256402	123256402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagattagtcatcagtcCatgtgtttaatttaggtcac	8	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123256402	A	A	123256402	1	1	9	0	1	0	0	0	0	0	0	0	1023	609	21	2		2	ASB15	7	123256402	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1725	123256402	35882261	8945	17096											
ASB15	142685	broad.mit.edu	37	chr7	123257681	123257681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctgtgatggagaaacacCcttgactttggcagtcaaag	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123257681	A	A	123257681	3	1	9	1	0	0	0	0	1	0	0	0	1023	623	22	2	355	2	ASB15	7	123257681	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1279	123257681	35880982	8946	17097											
ASB15	142685	broad.mit.edu	37	chr7	123276850	123276850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttttttgcttattttccCgatttcttttagagaatcct	4	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123276850	A	A	123276850	1	1	9	0	1	0	0	0	0	0	0	0	1023	667	23	1		1	ASB15	7	123276850	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19169	123276850	35861813	8947	17098											
WASL	8976	broad.mit.edu	37	chr7	123329148	123329148	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacttccattaatgcaccCacaattcctgaagtgggtgc	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123329148	A	A	123329148	2	1	9	1	0	0	0	0	0	0	0	1	17383	581	21	2		2	WASL	7	123329148	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52298	123329148	35809515	8948	17099											
WASL	8976	broad.mit.edu	37	chr7	123332726	123332726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtggaggagggtacatcCtatttggcggtggtggaggg	21	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123332726	A	A	123332726	3	1	9	1	0	0	0	0	1	0	0	0	17383	681	24	2	507	2	WASL	7	123332726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3578	123332726	35805937	8949	17100											
WASL	8976	broad.mit.edu	37	chr7	123336712	123336712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcttttctttggtatGggagatgttgttgacttgtg	11	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123336712	T	T	123336712	3	4	9	1	0	0	0	0	1	0	0	0	17383	1348	47	2	991	2	WASL	7	123336712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3986	123336712	35801951	8950	17101											
GPR37	2861	broad.mit.edu	37	chr7	124386654	124386654	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcgagagttcgagttcCgtggtgtactcgttgtcatt	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124386654	A	A	124386654	2	1	9	1	0	0	0	0	0	0	0	1	6756	639	23	1		1	GPR37	7	124386654	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1049942	124386654	34752009	8951	17102											
POT1	25913	broad.mit.edu	37	chr7	124481059	124481059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagacattcatttgaaagcGggagaataccattatttttc	8	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124481059	T	T	124481059	3	4	9	1	0	0	0	0	1	0	0	0	12355	1116	39	1	591	1	POT1	7	124481059	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	94405	124481059	34657604	8952	17103											
POT1	25913	broad.mit.edu	37	chr7	124503507	124503507	+	Missense_Mutation	SNP	C	A	A													cacacaattttagtaatgtcCaagacggtgacatatgagta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124503507	A	A	124503507	3	1	9	1	0	0	0	0	1	0	0	0	12355	595	21	2	1509	2	POT1	7	124503507	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22448	124503507	34635156	8953	17104	110	2									
POT1	25913	broad.mit.edu	37	chr7	124503513	124503513	+	Missense_Mutation	SNP	G	T	T													attttagtaatgtccaagacGgtgacatatgagtagatgcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124503513	T	T	124503513	3	4	9	1	0	0	0	0	1	0	0	0	12355	1116	39	1	1515	1	POT1	7	124503513	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	124503513	34635150	8954	17105	110	2									
POT1	25913	broad.mit.edu	37	chr7	124532390	124532390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgacaattgtaccaccCttaagttgattcaggggtgt	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124532390	A	A	124532390	3	1	9	1	0	0	0	0	1	0	0	0	12355	680	24	2	1906	2	POT1	7	124532390	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28877	124532390	34606273	8955	17106											
ZNF800	168850	broad.mit.edu	37	chr7	127013801	127013801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtatcacatcacgtttcCgacgagtttcataagtgcaa	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127013801	A	A	127013801	3	1	9	1	0	0	0	0	1	0	0	0	18298	652	23	1	413	1	ZNF800	7	127013801	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2481411	127013801	32124862	8956	17107											
GCC1	79571	broad.mit.edu	37	chr7	127223300	127223300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggatatttgattctccaGggctgccaccctctgttctt	8	13	3	1	rs150564942	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127223300	T	T	127223300	3	4	9	1	0	0	0	0	1	0	0	0	6347	991	35	2	1235	2	GCC1	7	127223300	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	209499	127223300	31915363	8957	17108											
GCC1	79571	broad.mit.edu	37	chr7	127224696	127224696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtaagaagcctccatgcGggacttctcctgagtgactg	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127224696	T	T	127224696	3	4	9	1	0	0	0	0	1	0	0	0	6347	1116	39	1	1794	1	GCC1	7	127224696	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1396	127224696	31913967	8958	17109											
SND1	27044	broad.mit.edu	37	chr7	127334966	127334966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatagaaaacaagactcccCaggggcgagagtatggcatg	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127334966	A	A	127334966	3	1	9	1	0	0	0	0	1	0	0	0	14958	595	21	2	323	2	SND1	7	127334966	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110270	127334966	31803697	8959	17110											
SND1	27044	broad.mit.edu	37	chr7	127347659	127347659	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagagactatgtggctccCacagctaatttggaccaaaa	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127347659	A	A	127347659	2	1	9	1	0	0	0	0	0	0	0	1	14958	581	21	2		2	SND1	7	127347659	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12693	127347659	31791004	8960	17111											
SND1	27044	broad.mit.edu	37	chr7	127569339	127569339	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggttctcgtctcaaactCtatttgccaaaggaaacttg	8	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127569339	A	A	127569339	2	1	9	1	0	0	0	0	0	0	0	1	14958	900	32	3		3	SND1	7	127569339	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	221680	127569339	31569324	8961	17112											
LEP	3952	broad.mit.edu	37	chr7	127894537	127894537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgaccttatccaagatGgaccagacactggcagtcta	8	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127894537	T	T	127894537	3	4	9	1	0	0	0	0	1	0	0	0	8799	1348	47	2	231	2	LEP	7	127894537	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	325198	127894537	31244126	8962	17113											
LEP	3952	broad.mit.edu	37	chr7	127894598	127894598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttccagaaacgtgatcCaaatatccaacgacctggag	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127894598	A	A	127894598	3	1	9	1	0	0	0	0	1	0	0	0	8799	595	21	2	292	2	LEP	7	127894598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	127894598	31244065	8963	17114											
RBM28	55131	broad.mit.edu	37	chr7	127963581	127963581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgcctaatctactcaccCgttctcttttggccatatca	4	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127963581	A	A	127963581	3	1	9	1	0	0	0	0	1	0	0	0	13236	666	23	1	904	1	RBM28	7	127963581	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68983	127963581	31175082	8964	17115											
RBM28	55131	broad.mit.edu	37	chr7	127964693	127964693	+	Missense_Mutation	SNP	G	T	T													aagctttgcagcctcatcacGggtcaccgccaagtcaacct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127964693	T	T	127964693	3	4	9	1	0	0	0	0	1	0	0	0	13236	1116	39	1	1053	1	RBM28	7	127964693	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1112	127964693	31173970	8965	17116	111	2									
RBM28	55131	broad.mit.edu	37	chr7	127964700	127964700	+	Silent	SNP	C	A	A													gcagcctcatcacgggtcacCgccaagtcaaccttgagctg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127964700	A	A	127964700	2	1	9	1	0	0	0	0	0	0	0	1	13236	639	23	1		1	RBM28	7	127964700	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	127964700	31173963	8966	17117	111	2									
RBM28	55131	broad.mit.edu	37	chr7	127964766	127964766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtaacagatcacaaccCtttcttaaaacacataatgg	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127964766	A	A	127964766	1	1	9	0	1	0	0	0	0	0	0	0	13236	696	24	2		2	RBM28	7	127964766	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	127964766	31173897	8967	17118											
IMPDH1	3614	broad.mit.edu	37	chr7	128049501	128049501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttggagccacctgaacGgggtgtcgtcgggtgtgtag	19	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128049501	T	T	128049501	3	4	9	1	0	0	0	0	1	0	0	0	7796	1116	39	1	1693	1	IMPDH1	7	128049501	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84735	128049501	31089162	8968	17119											
IMPDH1	3614	broad.mit.edu	37	chr7	128049512	128049512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgaacggggtgtcgtcGggtgtgtagcgaggtccaat	16	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128049512	T	T	128049512	3	4	9	1	0	0	0	0	1	0	0	0	7796	1116	39	1	1704	1	IMPDH1	7	128049512	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	128049512	31089151	8969	17120											
METTL2B	55798	broad.mit.edu	37	chr7	128120650	128120650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctagcttttctagctttcGggaattaactctggaaagtt	8	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128120650	T	T	128120650	1	4	9	0	1	0	0	0	0	0	0	0	9593	1131	39	1		1	METTL2B	7	128120650	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	71138	128120650	31018013	8970	17121											
METTL2B	55798	broad.mit.edu	37	chr7	128133883	128133883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaatatgatccttctcGgtgttttgcctttgttcacg	8	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128133883	T	T	128133883	3	4	9	1	0	0	0	0	1	0	0	0	9593	1116	39	1	717	1	METTL2B	7	128133883	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13233	128133883	31004780	8971	17122											
METTL2B	55798	broad.mit.edu	37	chr7	128138178	128138178	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acggccgctatgacatggctCagcttcggtttaaaaaaggt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128138178	A	A	128138178	3	1	9	1	0	0	0	0	1	0	0	0	9593	827	29	3	924	3	METTL2B	7	128138178	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4295	128138178	31000485	8972	17123											
FLNC	2318	broad.mit.edu	37	chr7	128478663	128478663	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgttttcggcaggggccgGcactggcgatgttgctgtgg	17	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128478663	A	A	128478663	3	1	9	1	0	0	0	0	1	0	0	0	5993	1203	42	4	1247	4	FLNC	7	128478663	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	340485	128478663	30660000	8973	17124											
FLNC	2318	broad.mit.edu	37	chr7	128489560	128489560	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatctactacacagcgccCgagccgggcaagtacgtcat	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128489560	A	A	128489560	2	1	9	1	0	0	0	0	0	0	0	1	5993	639	23	1		1	FLNC	7	128489560	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10897	128489560	30649103	8974	17125											
TNPO3	23534	broad.mit.edu	37	chr7	128632027	128632027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgatatttagagttccCagcaaaagacttatgagaca	7	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128632027	A	A	128632027	1	1	9	0	1	0	0	0	0	0	0	0	16460	609	21	2		2	TNPO3	7	128632027	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	142467	128632027	30506636	8975	17126											
TNPO3	23534	broad.mit.edu	37	chr7	128632053	128632053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacttatgagacactcacGgatcaacactctttgctata	6	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128632053	T	T	128632053	3	4	9	1	0	0	0	0	1	0	0	0	16460	1130	39	1	1465	1	TNPO3	7	128632053	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	128632053	30506610	8976	17127											
TNPO3	23534	broad.mit.edu	37	chr7	128696575	128696575	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcttggcctatgatccCgtgtgggccactggtactgg	13	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128696575	A	A	128696575	1	1	9	0	1	0	0	0	0	0	0	0	16460	667	23	1		1	TNPO3	7	128696575	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	64522	128696575	30442088	8977	17128											
AHCYL2	23382	broad.mit.edu	37	chr7	129062691	129062691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttccaggcgagtctgcGgacaccagaactgacctggg	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129062691	T	T	129062691	3	4	9	1	0	0	0	0	1	0	0	0	411	1116	39	1	1644	1	AHCYL2	7	129062691	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	366116	129062691	30075972	8978	17129											
FAM40B	57464	broad.mit.edu	37	chr7	129120722	129120722	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaaatggaaacattccCggaccatggtgagtgtggtt	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129120722	A	A	129120722	2	1	9	1	0	0	0	0	0	0	0	1	5612	643	23	1		1	FAM40B	7	129120722	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58031	129120722	30017941	8979	17130											
NRF1	4899	broad.mit.edu	37	chr7	129297290	129297290	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgtggctacttacacCgagcatagtatgctgagtgc	11	10	0	1	rs146957182		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129297290	A	A	129297290	2	1	9	1	0	0	0	0	0	0	0	1	10741	639	23	1		1	NRF1	7	129297290	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	176568	129297290	29841373	8980	17131											
NRF1	4899	broad.mit.edu	37	chr7	129348807	129348807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacatcttagaattctctGggaccttcctggaaacctct	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129348807	T	T	129348807	1	4	9	0	1	0	0	0	0	0	0	0	10741	1363	47	2		2	NRF1	7	129348807	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51517	129348807	29789856	8981	17132											
NRF1	4899	broad.mit.edu	37	chr7	129348852	129348852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttataaggttagaatttaaGgagtcataaacacaccccag	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129348852	T	T	129348852	1	4	9	0	1	0	0	0	0	0	0	0	10741	1015	35	2		2	NRF1	7	129348852	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	129348852	29789811	8982	17133											
NRF1	4899	broad.mit.edu	37	chr7	129348884	129348884	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaccccagatgtctttcatGagtattgatgaccacactgt	7	11	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129348884	T	T	129348884	1	4	9	0	1	0	0	0	0	0	0	0	10741	1305	45	3		3	NRF1	7	129348884	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	129348884	29789779	8983	17134											
NRF1	4899	broad.mit.edu	37	chr7	129348936	129348937	+	Missense_Mutation	DNP	CC	AA	AA													cccagcttcgggcatttatcCcagagatgctcaagtactct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	129348937	AA	AA	129348936	3	1	9	1	0	0	0	0	1	0	0	0	10741	623	22	2	646	2	NRF1	7	129348936	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	52	129348936	29789727	8984	17135											
NRF1	4899	broad.mit.edu	37	chr7	129349050	129349050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgtccggagtgatgtcCgcacagaagagcaaaagcag	12	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129349050	A	A	129349050	3	1	9	1	0	0	0	0	1	0	0	0	10741	652	23	1	760	1	NRF1	7	129349050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	129349050	29789613	8985	17136											
NRF1	4899	broad.mit.edu	37	chr7	129350272	129350272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttataaacagcatgggcGggaagaccttttgtatgcct	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129350272	T	T	129350272	3	4	9	1	0	0	0	0	1	0	0	0	10741	1116	39	1	846	1	NRF1	7	129350272	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1222	129350272	29788391	8986	17137											
NRF1	4899	broad.mit.edu	37	chr7	129351377	129351377	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattgccaaccacggtcacCgttgcccaagtgaattattc	8	12	1	1	rs112681617		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129351377	A	A	129351377	2	1	9	1	0	0	0	0	0	0	0	1	10741	639	23	1		1	NRF1	7	129351377	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1105	129351377	29787286	8987	17138											
UBE2H	7328	broad.mit.edu	37	chr7	129519468	129519468	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctaactttccatactcCgccttcatatggtgctgaaa	5	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129519468	A	A	129519468	4	1	9	1	0	0	0	0	0	1	0	0	16984	661	23	1	426	1	UBE2H	7	129519468	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168091	129519468	29619195	8988	17139											
UBE2H	7328	broad.mit.edu	37	chr7	129519522	129519522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcatcagaactacatctcCaaattagaaaataaatctga	4	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129519522	A	A	129519522	1	1	9	0	1	0	0	0	0	0	0	0	16984	609	21	2		2	UBE2H	7	129519522	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	129519522	29619141	8989	17140											
UBE2H	7328	broad.mit.edu	37	chr7	129592357	129592357	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatacagcttgaccacgtcCgtgtccatccgcctcttgcc	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129592357	A	A	129592357	2	1	9	1	0	0	0	0	0	0	0	1	16984	639	23	1		1	UBE2H	7	129592357	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72835	129592357	29546306	8990	17141											
ZC3HC1	51530	broad.mit.edu	37	chr7	129665944	129665944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattagtgactgatatatatGggtgtaatgctgttgtcatg	12	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129665944	T	T	129665944	1	4	9	0	1	0	0	0	0	0	0	0	17703	1363	47	2		2	ZC3HC1	7	129665944	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	73587	129665944	29472719	8991	17142											
KLHDC10	23008	broad.mit.edu	37	chr7	129756485	129756485	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagatggctacatgcccCgggaattggcatctatgtca	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129756485	A	A	129756485	2	1	9	1	0	0	0	0	0	0	0	1	8426	643	23	1		1	KLHDC10	7	129756485	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	90541	129756485	29382178	8992	17143											
KLHDC10	23008	broad.mit.edu	37	chr7	129760712	129760712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggctttgctcagctgtcGggggaagaaacccagtcgta	14	9	1	1	rs149721697		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129760712	T	T	129760712	3	4	9	1	0	0	0	0	1	0	0	0	8426	1116	39	1	613	1	KLHDC10	7	129760712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4227	129760712	29377951	8993	17144											
KLHDC10	23008	broad.mit.edu	37	chr7	129767258	129767258	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggctttcctgcagccCgaaggtgtcacagttgtgtt	13	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129767258	A	A	129767258	2	1	9	1	0	0	0	0	0	0	0	1	8426	644	23	1		1	KLHDC10	7	129767258	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6546	129767258	29371405	8994	17145											
TMEM209	84928	broad.mit.edu	37	chr7	129813713	129813713	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaagtaaaagtttttcCgtcgggatacttcggatgtg	12	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129813713	A	A	129813713	4	1	9	1	0	0	0	0	0	1	0	0	16257	661	23	1	290	1	TMEM209	7	129813713	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46455	129813713	29324950	8995	17146											
C7orf45	136263	broad.mit.edu	37	chr7	129856218	129856218	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggttggcgcaccattccCgacagaagccttcagtaaca	9	12	1	1	rs146470357		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129856218	A	A	129856218	2	1	9	1	0	0	0	0	0	0	0	1	2420	644	23	1		1	C7orf45	7	129856218	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42505	129856218	29282445	8996	17147											
CPA2	1358	broad.mit.edu	37	chr7	129916431	129916431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgttcccaacaaaagcGgtgtgtgaggttgacatgta	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129916431	T	T	129916431	1	4	9	0	1	0	0	0	0	0	0	0	3822	1131	39	1		1	CPA2	7	129916431	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	60213	129916431	29222232	8997	17148											
CPA4	51200	broad.mit.edu	37	chr7	129944332	129944332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagatttaccacgagatGgacaacattgccgcagactt	8	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129944332	T	T	129944332	3	4	9	1	0	0	0	0	1	0	0	0	3824	1348	47	2	417	2	CPA4	7	129944332	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27901	129944332	29194331	8998	17149											
CPA4	51200	broad.mit.edu	37	chr7	129950862	129950862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccacccagcctggggccCgcctgaccctcctggcgctg	11	21	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129950862	A	A	129950862	1	1	9	0	1	0	0	0	0	0	0	0	3824	667	23	1		1	CPA4	7	129950862	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6530	129950862	29187801	8999	17150											
CPA5	93979	broad.mit.edu	37	chr7	130002827	130002827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgggtttgcttttaccCacagcatggtgagggaacct	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130002827	A	A	130002827	3	1	9	1	0	0	0	0	1	0	0	0	3825	594	21	2	765	2	CPA5	7	130002827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51965	130002827	29135836	9000	17151											
CPA1	1357	broad.mit.edu	37	chr7	130023540	130023540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagatcactcaagactacGggcaggatgcagctttcacc	9	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130023540	T	T	130023540	3	4	9	1	0	0	0	0	1	0	0	0	3821	1116	39	1	623	1	CPA1	7	130023540	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20713	130023540	29115123	9001	17152											
CPA1	1357	broad.mit.edu	37	chr7	130027737	130027737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccttcaccttcgagctccGggacactgggcgctatggct	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130027737	T	T	130027737	3	4	9	1	0	0	0	0	1	0	0	0	3821	1116	39	1	1183	1	CPA1	7	130027737	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4197	130027737	29110926	9002	17153											
TSGA14	95681	broad.mit.edu	37	chr7	130038848	130038848	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcaccaggcaccttggactCtcttccggaggagttagctt	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130038848	A	A	130038848	4	1	9	1	0	0	0	0	0	1	0	0	16745	922	32	3	119	3	TSGA14	7	130038848	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11111	130038848	29099815	9003	17154											
TSGA14	95681	broad.mit.edu	37	chr7	130042624	130042624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtctagatccagttcccCaacaccactgatgacactgc	6	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130042624	A	A	130042624	3	1	9	1	0	0	0	0	1	0	0	0	16745	594	21	2	702	2	TSGA14	7	130042624	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3776	130042624	29096039	9004	17155											
MEST	4232	broad.mit.edu	37	chr7	130137781	130137781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttctttcttgtagatttGggaaggtctgaccttgaggt	12	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130137781	T	T	130137781	3	4	9	1	0	0	0	0	1	0	0	0	9577	1357	47	2	280	2	MEST	7	130137781	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95157	130137781	29000882	9005	17156											
MEST	4232	broad.mit.edu	37	chr7	130137808	130137808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaccttgaggtttcatcGggtgattgcccttgatttct	10	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130137808	T	T	130137808	3	4	9	1	0	0	0	0	1	0	0	0	9577	1116	39	1	307	1	MEST	7	130137808	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	130137808	29000855	9006	17157											
MEST	4232	broad.mit.edu	37	chr7	130143848	130143848	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgtacaggtgagtctccCcgagagaagtctatgttttg	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130143848	G	G	130143848	1	3	9	0	1	0	0	0	0	0	0	0	9577	638	22	4		4	MEST	7	130143848	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6040	130143848	28994815	9007	17158											
COPG2	26958	broad.mit.edu	37	chr7	130295861	130295861	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaagcgactggcaattcGgatcagcatgcagtaagcaa	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130295861	T	T	130295861	2	4	9	1	0	0	0	0	0	0	0	1	3764	1124	39	1		1	COPG2	7	130295861	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152013	130295861	28842802	9008	17159											
MKLN1	4289	broad.mit.edu	37	chr7	131122593	131122593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgcattgatattcaacGgaggcaaatctacacattgg	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131122593	T	T	131122593	3	4	9	1	0	0	0	0	1	0	0	0	9696	1116	39	1	1081	1	MKLN1	7	131122593	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	826732	131122593	28016070	9009	17160											
MKLN1	4289	broad.mit.edu	37	chr7	131148069	131148069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaagataaggaaaagaGggaagaaaatgttagaaatt	11	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131148069	T	T	131148069	3	4	9	1	0	0	0	0	1	0	0	0	9696	1000	35	2	1702	2	MKLN1	7	131148069	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25476	131148069	27990594	9010	17161											
PODXL	5420	broad.mit.edu	37	chr7	131189215	131189215	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccatcacttccagtgttGggttgtcatggtaaccattc	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131189215	T	T	131189215	3	4	9	1	0	0	0	0	1	0	0	0	12275	1348	47	2	148	2	PODXL	7	131189215	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41146	131189215	27949448	9011	17162											
PODXL	5420	broad.mit.edu	37	chr7	131195681	131195681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcataagatggtcatgtccCgagcttgttggggtggccac	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131195681	A	A	131195681	2	1	9	1	0	0	0	0	0	0	0	1	12275	639	23	1		1	PODXL	7	131195681	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6466	131195681	27942982	9012	17163											
PLXNA4	91584	broad.mit.edu	37	chr7	131844254	131844254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatccatatctgcagctttGggccggtgggagcaaggcac	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131844254	T	T	131844254	2	4	9	1	0	0	0	0	0	0	0	1	12217	1335	47	2		2	PLXNA4	7	131844254	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	648573	131844254	27294409	9013	17164											
PLXNA4	91584	broad.mit.edu	37	chr7	131864552	131864552	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgtttataggcaatgagCacggccacgatgaaaatgat	11	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131864552	A	A	131864552	2	1	9	1	0	0	0	0	0	0	0	1	12217	697	25	3		3	PLXNA4	7	131864552	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20298	131864552	27274111	9014	17165											
PLXNA4	91584	broad.mit.edu	37	chr7	131872279	131872279	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaccaccacgttgcttcCggcattcaggttggtgcctg	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131872279	A	A	131872279	4	1	9	1	0	0	0	0	0	1	0	0	12217	661	23	1	2812	1	PLXNA4	7	131872279	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7727	131872279	27266384	9015	17166											
PLXNA4	91584	broad.mit.edu	37	chr7	132192499	132192499	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgccaagcacggccccCgctttggacaggtaggcagc	13	15	0	0	rs142028036	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132192499	A	A	132192499	2	1	9	1	0	0	0	0	0	0	0	1	12217	639	23	1		1	PLXNA4	7	132192499	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	320220	132192499	26946164	9016	17167											
CHCHD3	54927	broad.mit.edu	37	chr7	132709320	132709320	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaccgtttctgatcttcGgattctttcttggcttgctc	7	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132709320	T	T	132709320	2	4	9	1	0	0	0	0	0	0	0	1	3348	1103	39	1		1	CHCHD3	7	132709320	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	516821	132709320	26429343	9017	17168											
EXOC4	60412	broad.mit.edu	37	chr7	133314871	133314871	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagccagaaacattacCgtcatattccacccattact	5	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133314871	A	A	133314871	2	1	9	1	0	0	0	0	0	0	0	1	5348	639	23	1		1	EXOC4	7	133314871	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	605551	133314871	25823792	9018	17169											
EXOC4	60412	broad.mit.edu	37	chr7	133692636	133692636	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttatgccaaagctaagacctCgttgcctgtgaagtcatttt	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133692636	A	A	133692636	1	1	9	0	1	0	0	0	0	0	0	0	5348	899	31	3		3	EXOC4	7	133692636	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	377765	133692636	25446027	9019	17170											
LRGUK	136332	broad.mit.edu	37	chr7	133881803	133881803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggattaaatagggacacCgtagaaggtatcgcaagaga	12	5	0	2	rs148771403		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133881803	A	A	133881803	2	1	9	1	0	0	0	0	0	0	0	1	9030	639	23	1		1	LRGUK	7	133881803	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	189167	133881803	25256860	9020	17171											
AKR1B1	231	broad.mit.edu	37	chr7	134133736	134133736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaatgccagtgtcgttGggggatgtttacctggttaa	14	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134133736	T	T	134133736	1	4	9	0	1	0	0	0	0	0	0	0	466	1363	47	2		2	AKR1B1	7	134133736	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	251933	134133736	25004927	9021	17172											
BPGM	669	broad.mit.edu	37	chr7	134346784	134346784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatgaaaggattgctccCgaagtattacgtggcaaaac	11	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134346784	A	A	134346784	2	1	9	1	0	0	0	0	0	0	0	1	1497	639	23	1		1	BPGM	7	134346784	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	213048	134346784	24791879	9022	17173											
WDR91	29062	broad.mit.edu	37	chr7	134873212	134873212	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgccgatgctgtacacGgtgttctcatcatagctgaa	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134873212	T	T	134873212	2	4	9	1	0	0	0	0	0	0	0	1	17465	1103	39	1		1	WDR91	7	134873212	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	526428	134873212	24265451	9023	17174											
WDR91	29062	broad.mit.edu	37	chr7	134894385	134894385	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttcagcttgtggattgtGggtctgtatatatcctccaa	10	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134894385	T	T	134894385	2	4	9	1	0	0	0	0	0	0	0	1	17465	1335	47	2		2	WDR91	7	134894385	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21173	134894385	24244278	9024	17175											
CNOT4	4850	broad.mit.edu	37	chr7	135047597	135047597	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagggagaaaacagagtGggacaaatcctgcattttct	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135047597	T	T	135047597	1	4	9	0	1	0	0	0	0	0	0	0	3653	1363	47	2		2	CNOT4	7	135047597	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	153212	135047597	24091066	9025	17176											
CNOT4	4850	broad.mit.edu	37	chr7	135048771	135048771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtagaagtgcccttagccCgtcctgccattccttcatat	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135048771	A	A	135048771	3	1	9	1	0	0	0	0	1	0	0	0	3653	667	23	1		1	CNOT4	7	135048771	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1174	135048771	24089892	9026	17177											
NUP205	23165	broad.mit.edu	37	chr7	135277869	135277869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaccgtcaccttccttccCgtggcatcacccagaaggag	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135277869	A	A	135277869	3	1	9	1	0	0	0	0	1	0	0	0	10854	652	23	1	1805	1	NUP205	7	135277869	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	229098	135277869	23860794	9027	17178											
NUP205	23165	broad.mit.edu	37	chr7	135282770	135282770	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaaatgaaatagaatccCggtgtgaagaatacccattg	8	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135282770	A	A	135282770	2	1	9	1	0	0	0	0	0	0	0	1	10854	643	23	1		1	NUP205	7	135282770	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4901	135282770	23855893	9028	17179											
NUP205	23165	broad.mit.edu	37	chr7	135282923	135282923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgtgtttctacgattcCgtacaagagcttaccggaga	9	10	2	2	rs145323158		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135282923	A	A	135282923	3	1	9	1	0	0	0	0	1	0	0	0	10854	652	23	1	2300	1	NUP205	7	135282923	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	153	135282923	23855740	9029	17180											
NUP205	23165	broad.mit.edu	37	chr7	135304559	135304559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggattccaacgagtgaGgactcacttgtatggctctc	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135304559	T	T	135304559	3	4	9	1	0	0	0	0	1	0	0	0	10854	1000	35	2	4371	2	NUP205	7	135304559	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21636	135304559	23834104	9030	17181											
NUP205	23165	broad.mit.edu	37	chr7	135304603	135304603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttattacttacagattgccCagagacctgatgaaccagac	7	10	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135304603	A	A	135304603	3	1	9	1	0	0	0	0	1	0	0	0	10854	595	21	2	4415	2	NUP205	7	135304603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	135304603	23834060	9031	17182											
NUP205	23165	broad.mit.edu	37	chr7	135307585	135307585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtatttagcaaattacagcGagaaaacatagccattattg	7	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135307585	T	T	135307585	3	4	9	1	0	0	0	0	1	0	0	0	10854	1058	37	3	4513	3	NUP205	7	135307585	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2982	135307585	23831078	9032	17183											
NUP205	23165	broad.mit.edu	37	chr7	135312776	135312776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccccagtggatcgctacCgccagattctcctcccagct	7	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135312776	A	A	135312776	3	1	9	1	0	0	0	0	1	0	0	0	10854	652	23	1	4983	1	NUP205	7	135312776	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5191	135312776	23825887	9033	17184											
NUP205	23165	broad.mit.edu	37	chr7	135330313	135330313	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagattccttatttgcctcGagaaccttgtttaaaagcag	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135330313	T	T	135330313	2	4	9	1	0	0	0	0	0	0	0	1	10854	1045	37	3		3	NUP205	7	135330313	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17537	135330313	23808350	9034	17185											
SLC13A4	26266	broad.mit.edu	37	chr7	135370407	135370407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggacaacatctggttccCaatccatgtagagaggccag	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135370407	A	A	135370407	3	1	9	1	0	0	0	0	1	0	0	0	14507	594	21	2	424	2	SLC13A4	7	135370407	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40094	135370407	23768256	9035	17186											
SLC13A4	26266	broad.mit.edu	37	chr7	135376039	135376039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtccttccacgtgatgatGggctcggtccccagtgagtg	13	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135376039	T	T	135376039	2	4	9	1	0	0	0	0	0	0	0	1	14507	1335	47	2		2	SLC13A4	7	135376039	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5632	135376039	23762624	9036	17187											
LUZP6	767558	broad.mit.edu	37	chr7	135635478	135635478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgtttttcatttcttcCtactttctagttttaactag	3	8	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135635478	A	A	135635478	1	1	9	0	1	0	0	0	0	0	0	0	9176	696	24	2		2	LUZP6	7	135635478	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	259439	135635478	23503185	9037	17188											
DGKI	9162	broad.mit.edu	37	chr7	137172424	137172424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgcacaactagaatacCcagaggtatcgctaagggtg	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137172424	A	A	137172424	3	1	9	1	0	0	0	0	1	0	0	0	4511	623	22	2	931	2	DGKI	7	137172424	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1536946	137172424	21966239	9038	17189											
DGKI	9162	broad.mit.edu	37	chr7	137206680	137206680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaactgattttgttcaccCggatcctcagacgatctggg	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137206680	A	A	137206680	3	1	9	1	0	0	0	0	1	0	0	0	4511	652	23	1	1073	1	DGKI	7	137206680	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34256	137206680	21931983	9039	17190											
DGKI	9162	broad.mit.edu	37	chr7	137339506	137339506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaccttgagcctccttctCgaaatgttggtttacatctg	9	10	2	2	rs75772069		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137339506	A	A	137339506	3	1	9	1	0	0	0	0	1	0	0	0	4511	884	31	3	2607	3	DGKI	7	137339506	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132826	137339506	21799157	9040	17191											
DGKI	9162	broad.mit.edu	37	chr7	137341151	137341151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaactggaaatttacaccGggcctctgaagaccaaatac	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137341151	T	T	137341151	1	4	9	0	1	0	0	0	0	0	0	0	4511	1131	39	1		1	DGKI	7	137341151	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1645	137341151	21797512	9041	17192											
DGKI	9162	broad.mit.edu	37	chr7	137363288	137363288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccttcccccagcaagacGgagcgcacactcactgcaaa	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137363288	T	T	137363288	1	4	9	0	1	0	0	0	0	0	0	0	4511	1131	39	1		1	DGKI	7	137363288	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22137	137363288	21775375	9042	17193											
DGKI	9162	broad.mit.edu	37	chr7	137406907	137406907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaattggcaggtattccCgatctgctatgtattccaga	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137406907	A	A	137406907	1	1	9	0	1	0	0	0	0	0	0	0	4511	667	23	1		1	DGKI	7	137406907	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43619	137406907	21731756	9043	17194											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138429847	138429847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatggccagcgactacacCatctctgtctgtcaactcac	8	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138429847	A	A	138429847	1	1	9	0	1	0	0	0	0	0	0	0	1174	609	21	2		2	ATP6V0A4	7	138429847	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1022940	138429847	20708816	9044	17195											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138447612	138447612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgaggttctgaggaacGggccctttagtaactcatcc	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138447612	T	T	138447612	1	4	9	0	1	0	0	0	0	0	0	0	1174	1131	39	1		1	ATP6V0A4	7	138447612	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17765	138447612	20691051	9045	17196											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138453918	138453918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaattggcttacGgaggattctctccagtgatt	8	6	1	1	rs146911574		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138453918	T	T	138453918	3	4	9	1	0	0	0	0	1	0	0	0	1174	1130	39	1	2402	1	ATP6V0A4	7	138453918	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6306	138453918	20684745	9046	17197											
KIAA1549	57670	broad.mit.edu	37	chr7	138556055	138556055	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagatcctgtccacgtgctCgaagatggaggctgatgagt	15	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138556055	A	A	138556055	4	1	9	1	0	0	0	0	0	1	0	0	8314	893	31	3	1485	3	KIAA1549	7	138556055	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102137	138556055	20582608	9047	17198											
KIAA1549	57670	broad.mit.edu	37	chr7	138583732	138583732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccttgaattcggtaaccCaagatgatggctgctctctg	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138583732	A	A	138583732	3	1	9	1	0	0	0	0	1	0	0	0	8314	593	21	2	2084	2	KIAA1549	7	138583732	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27677	138583732	20554931	9048	17199											
KIAA1549	57670	broad.mit.edu	37	chr7	138603427	138603427	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatctgtctgcacttgtggcCcaaacctcctctggaggctg	10	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138603427	G	G	138603427	3	3	9	1	0	0	0	0	1	0	0	0	8314	624	22	4	4983	4	KIAA1549	7	138603427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19695	138603427	20535236	9049	17200											
KIAA1549	57670	broad.mit.edu	37	chr7	138603742	138603742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgttgtgttctgccagccCgatgtcacttcttcatcttg	9	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138603742	A	A	138603742	2	1	9	1	0	0	0	0	0	0	0	1	8314	639	23	1		1	KIAA1549	7	138603742	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	315	138603742	20534921	9050	17201											
TTC26	79989	broad.mit.edu	37	chr7	138818507	138818507	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcgtaccagcgtccaggcGgggttaccgtggagacagaa	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138818507	T	T	138818507	1	4	9	0	1	0	0	0	0	0	0	0	16820	1131	39	1		1	TTC26	7	138818507	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	214765	138818507	20320156	9051	17202											
TTC26	79989	broad.mit.edu	37	chr7	138818672	138818672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggcgattagaggttccCagcacacttctgtgtgaagt	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138818672	A	A	138818672	1	1	9	0	1	0	0	0	0	0	0	0	16820	609	21	2		2	TTC26	7	138818672	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	165	138818672	20319991	9052	17203											
TTC26	79989	broad.mit.edu	37	chr7	138857342	138857342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgggaaaaagtaatcacGgtattctgctaaaaacctca	7	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138857342	T	T	138857342	1	4	9	0	1	0	0	0	0	0	0	0	16820	1131	39	1		1	TTC26	7	138857342	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38670	138857342	20281321	9053	17204											
TTC26	79989	broad.mit.edu	37	chr7	138874134	138874134	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaagtagaatacatgatcCggatcatgaagaaatgggcc	10	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138874134	A	A	138874134	2	1	9	1	0	0	0	0	0	0	0	1	16820	643	23	1		1	TTC26	7	138874134	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16792	138874134	20264529	9054	17205											
UBN2	254048	broad.mit.edu	37	chr7	138954195	138954195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcagtggtgtctactccCaccttgaagcttttgtgcca	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138954195	A	A	138954195	3	1	9	1	0	0	0	0	1	0	0	0	17019	594	21	2	1552	2	UBN2	7	138954195	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80061	138954195	20184468	9055	17206											
UBN2	254048	broad.mit.edu	37	chr7	138968337	138968337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcctcttcacagaccCatgtctcctcttcttcccaa	2	18	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138968337	A	A	138968337	3	1	9	1	0	0	0	0	1	0	0	0	17019	594	21	2	2744	2	UBN2	7	138968337	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14142	138968337	20170326	9056	17207											
HIPK2	28996	broad.mit.edu	37	chr7	139281498	139281498	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgttcctcctcctcgtcCgtgtcactgctgatggtgat	9	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139281498	A	A	139281498	2	1	9	1	0	0	0	0	0	0	0	1	7184	639	23	1		1	HIPK2	7	139281498	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	313161	139281498	19857165	9057	17208											
HIPK2	28996	broad.mit.edu	37	chr7	139311473	139311473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacaggtcaatgaactccCgccggtcagccttttctacc	7	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139311473	A	A	139311473	3	1	9	1	0	0	0	0	1	0	0	0	7184	652	23	1	2143	1	HIPK2	7	139311473	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29975	139311473	19827190	9058	17209											
PARP12	64761	broad.mit.edu	37	chr7	139741572	139741572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgagcctgggtagcacCgtaagtcatggcgttaaagt	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139741572	A	A	139741572	3	1	9	1	0	0	0	0	1	0	0	0	11551	652	23	1	1079	1	PARP12	7	139741572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	430099	139741572	19397091	9059	17210											
JHDM1D	80853	broad.mit.edu	37	chr7	139791671	139791671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtggggtgaaggggcacCgagaaggaagtttcaccaac	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139791671	A	A	139791671	2	1	9	1	0	0	0	0	0	0	0	1	8018	639	23	1		1	JHDM1D	7	139791671	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50099	139791671	19346992	9060	17211											
JHDM1D	80853	broad.mit.edu	37	chr7	139793704	139793704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcggcatctctcaaaatGgacagttgttcaaatgtgca	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139793704	T	T	139793704	1	4	9	0	1	0	0	0	0	0	0	0	8018	1363	47	2		2	JHDM1D	7	139793704	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2033	139793704	19344959	9061	17212											
JHDM1D	80853	broad.mit.edu	37	chr7	139797360	139797360	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaccagtgcagtgcactcGggtccggagtcttctgactc	12	13	2	1	rs148957004	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139797360	T	T	139797360	2	4	9	1	0	0	0	0	0	0	0	1	8018	1103	39	1		1	JHDM1D	7	139797360	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3656	139797360	19341303	9062	17213											
JHDM1D	80853	broad.mit.edu	37	chr7	139818801	139818801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatttaaaaaacaaaataGgagtgacatccatacactac	4	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139818801	A	A	139818801	1	1	9	0	1	0	0	0	0	0	0	0	8018	1015	35	4		4	JHDM1D	7	139818801	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21441	139818801	19319862	9063	17214											
SLC37A3	84255	broad.mit.edu	37	chr7	140048472	140048472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacagcttgtcggcttcCgcctccttccagccgaagtt	10	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140048472	A	A	140048472	2	1	9	1	0	0	0	0	0	0	0	1	14713	639	23	1		1	SLC37A3	7	140048472	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	229671	140048472	19090191	9064	17215											
SLC37A3	84255	broad.mit.edu	37	chr7	140051275	140051275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataacagcgacagccactGtttatggagtgcctaccacg	9	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140051275	T	T	140051275	1	4	9	0	1	0	0	0	0	0	0	0	14713	1392	48	3		3	SLC37A3	7	140051275	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2803	140051275	19087388	9065	17216											
DENND2A	27147	broad.mit.edu	37	chr7	140269489	140269489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggacagcctcttcaccCgtttctttcctctccggacc	7	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140269489	A	A	140269489	3	1	9	1	0	0	0	0	1	0	0	0	4469	652	23	1	1589	1	DENND2A	7	140269489	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	218214	140269489	18869174	9066	17217											
ADCK2	90956	broad.mit.edu	37	chr7	140390510	140390510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtggtgggaaatgagcGgttctggaaggctcggtggt	22	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140390510	T	T	140390510	1	4	9	0	1	0	0	0	0	0	0	0	289	1131	39	1		1	ADCK2	7	140390510	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	121021	140390510	18748153	9067	17218											
NDUFB2	4708	broad.mit.edu	37	chr7	140402712	140402712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggtatagacagttccccCagctgaccagatcccaggtg	10	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140402712	A	A	140402712	3	1	9	1	0	0	0	0	1	0	0	0	10376	595	21	2	151	2	NDUFB2	7	140402712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12202	140402712	18735951	9068	17219											
NDUFB2	4708	broad.mit.edu	37	chr7	140402742	140402742	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatcccaggtgttccagagcGagttcttcagcggactcatg	12	11	3	1	rs11852		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140402742	T	T	140402742	4	4	9	1	0	0	0	0	0	1	0	0	10376	1059	37	3	181	3	NDUFB2	7	140402742	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	140402742	18735921	9069	17220											
BRAF	673	broad.mit.edu	37	chr7	140481245	140481245	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttagaaacttttggaggagtCctgaaactaatcaaaatagt	8	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481245	A	A	140481245	1	1	9	0	1	0	0	0	0	0	0	0	1505	870	30	3		3	BRAF	7	140481245	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	78503	140481245	18657418	9070	17221											
WEE2	494551	broad.mit.edu	37	chr7	141424843	141424843	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggattaccggcaccttccCaaagcagacatatttgcctt	7	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141424843	A	A	141424843	2	1	9	1	0	0	0	0	0	0	0	1	17472	581	21	2		2	WEE2	7	141424843	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	943598	141424843	17713820	9071	17222											
WEE2	494551	broad.mit.edu	37	chr7	141427044	141427044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttggagttggcttgaatGggaagatttttcccaatagt	14	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141427044	T	T	141427044	1	4	9	0	1	0	0	0	0	0	0	0	17472	1363	47	2		2	WEE2	7	141427044	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2201	141427044	17711619	9072	17223											
TAS2R3	50831	broad.mit.edu	37	chr7	141464393	141464393	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttatcctgtggtagtacCgcatctctgatcaatgagtt	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141464393	A	A	141464393	2	1	9	1	0	0	0	0	0	0	0	1	15691	639	23	1		1	TAS2R3	7	141464393	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37349	141464393	17674270	9073	17224											
TAS2R3	50831	broad.mit.edu	37	chr7	141464857	141464857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatttgtagtgatgctccGgtgtgagtctggtcatctga	13	7	3	3	rs142127240		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141464857	T	T	141464857	3	4	9	1	0	0	0	0	1	0	0	0	15691	1116	39	1	901	1	TAS2R3	7	141464857	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	464	141464857	17673806	9074	17225											
TAS2R5	54429	broad.mit.edu	37	chr7	141491042	141491042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagacagtgtgtgctcGgagatgctggggcccatgat	17	7	0	3	rs2234016	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141491042	T	T	141491042	3	4	9	1	0	0	0	0	1	0	0	0	15702	1116	39	1	883	1	TAS2R5	7	141491042	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26185	141491042	17647621	9075	17226											
PRSS37	136242	broad.mit.edu	37	chr7	141537011	141537011	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctcgatcagacatcacGggggcctccaggttctgccg	11	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141537011	T	T	141537011	2	4	9	1	0	0	0	0	0	0	0	1	12732	1103	39	1		1	PRSS37	7	141537011	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45969	141537011	17601652	9076	17227											
PRSS37	136242	broad.mit.edu	37	chr7	141537867	141537867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaattgtctgttcagtacCgtctctgactctgctcttga	8	10	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141537867	A	A	141537867	3	1	9	1	0	0	0	0	1	0	0	0	12732	652	23	1	496	1	PRSS37	7	141537867	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	856	141537867	17600796	9077	17228											
OR9A4	130075	broad.mit.edu	37	chr7	141619217	141619217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacaattttttttgtgaccGagggcaattgctcaaactat	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141619217	T	T	141619217	3	4	9	1	0	0	0	0	1	0	0	0	11343	1058	37	3	544	3	OR9A4	7	141619217	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81350	141619217	17519446	9078	17229											
CLEC5A	23601	broad.mit.edu	37	chr7	141643726	141643726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccttgtggtaatgaagcCgttgggacttggggaactgc	15	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141643726	A	A	141643726	3	1	9	1	0	0	0	0	1	0	0	0	3551	652	23	1	404	1	CLEC5A	7	141643726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24509	141643726	17494937	9079	17230											
TAS2R38	5726	broad.mit.edu	37	chr7	141673285	141673285	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactcaggaacagcagtcCatgcaggaaaagccggctga	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141673285	A	A	141673285	4	1	9	1	0	0	0	0	0	1	0	0	15694	603	21	2	800	2	TAS2R38	7	141673285	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29559	141673285	17465378	9080	17231											
MGAM	8972	broad.mit.edu	37	chr7	141755416	141755416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttatccgcatctccaccCgccttccctccaagtacctc	4	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141755416	A	A	141755416	3	1	9	1	0	0	0	0	1	0	0	0	9634	652	23	1	3479	1	MGAM	7	141755416	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82131	141755416	17383247	9081	17232											
MGAM	8972	broad.mit.edu	37	chr7	141758063	141758063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttccagctgtgtcgctatGgctaccagaatgactctgag	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141758063	T	T	141758063	3	4	9	1	0	0	0	0	1	0	0	0	9634	1348	47	2	3872	2	MGAM	7	141758063	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2647	141758063	17380600	9082	17233											
MGAM	8972	broad.mit.edu	37	chr7	141758117	141758117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgagatggtggctgccCagatcccttatgtacgttct	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141758117	A	A	141758117	3	1	9	1	0	0	0	0	1	0	0	0	9634	595	21	2	3926	2	MGAM	7	141758117	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	141758117	17380546	9083	17234											
MGAM	8972	broad.mit.edu	37	chr7	141800678	141800678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggctcttctgggatgatGggcaaagcattggtgagtag	16	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141800678	T	T	141800678	3	4	9	1	0	0	0	0	1	0	0	0	9634	1348	47	2	5437	2	MGAM	7	141800678	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42561	141800678	17337985	9084	17235											
TRYX3	136541	broad.mit.edu	37	chr7	141955391	141955391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtgatcacccaaagcGggtggatcaggactccagcg	13	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141955391	T	T	141955391	3	4	9	1	0	0	0	0	1	0	0	0	16729	1116	39	1	598	1	TRYX3	7	141955391	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	154713	141955391	17183272	9085	17236											
EPHB6	2051	broad.mit.edu	37	chr7	142561766	142561766	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgaccagcgacgcctgactCggacctttgaggcatgtcat	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142561766	A	A	142561766	2	1	9	1	0	0	0	0	0	0	0	1	5220	875	31	3		3	EPHB6	7	142561766	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	606375	142561766	16576897	9086	17237											
EPHB6	2051	broad.mit.edu	37	chr7	142564272	142564272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtgcaccaggtgagccGggcatccaacagcatcacgg	14	12	1	1	rs8177175		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142564272	T	T	142564272	3	4	9	1	0	0	0	0	1	0	0	0	5220	1116	39	1	1518	1	EPHB6	7	142564272	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2506	142564272	16574391	9087	17238											
TRPV5	56302	broad.mit.edu	37	chr7	142612094	142612094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacccagcatctggaatcctCgagtgaaatacatgacactg	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142612094	A	A	142612094	3	1	9	1	0	0	0	0	1	0	0	0	16724	884	31	3	800	3	TRPV5	7	142612094	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47822	142612094	16526569	9088	17239											
KEL	3792	broad.mit.edu	37	chr7	142638431	142638431	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgctgctgaggggccCgtggactcggaggtgtggag	22	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142638431	A	A	142638431	3	1	9	1	0	0	0	0	1	0	0	0	8212	652	23	1	95	1	KEL	7	142638431	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26337	142638431	16500232	9089	17240											
KEL	3792	broad.mit.edu	37	chr7	142640568	142640568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacccttacagagtgaccCatacctgggatagccagggt	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142640568	A	A	142640568	1	1	9	0	1	0	0	0	0	0	0	0	8212	609	21	2		2	KEL	7	142640568	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2137	142640568	16498095	9090	17241											
KEL	3792	broad.mit.edu	37	chr7	142641427	142641427	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatcgttgtattcttgtcGggccagctctggcttcaggg	12	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142641427	T	T	142641427	2	4	9	1	0	0	0	0	0	0	0	1	8212	1124	39	1		1	KEL	7	142641427	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	859	142641427	16497236	9091	17242											
KEL	3792	broad.mit.edu	37	chr7	142650840	142650840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgcccccaagatctacGgtgctcaggctctcctccat	7	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142650840	T	T	142650840	1	4	9	0	1	0	0	0	0	0	0	0	8212	1131	39	1		1	KEL	7	142650840	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9413	142650840	16487823	9092	17243											
KEL	3792	broad.mit.edu	37	chr7	142658033	142658033	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagtattctccgaagtcGgtttttgttctttgtggcaa	9	9	2	0	rs61729053		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142658033	T	T	142658033	2	4	9	1	0	0	0	0	0	0	0	1	8212	1124	39	1		1	KEL	7	142658033	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7193	142658033	16480630	9093	17244											
KEL	3792	broad.mit.edu	37	chr7	142658505	142658505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaacaaaggagcaggccCaaaatcaggatagctgtcag	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142658505	A	A	142658505	3	1	9	1	0	0	0	0	1	0	0	0	8212	593	21	2	2101	2	KEL	7	142658505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	472	142658505	16480158	9094	17245											
KEL	3792	broad.mit.edu	37	chr7	142658818	142658818	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagtagatgagtgtttgtGggattttagagccgagagtg	16	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142658818	T	T	142658818	1	4	9	0	1	0	0	0	0	0	0	0	8212	1363	47	2		2	KEL	7	142658818	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	313	142658818	16479845	9095	17246											
OR9A2	135924	broad.mit.edu	37	chr7	142723354	142723354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctttgactttgtcattcCgaagagtaaagatgaaagga	9	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142723354	A	A	142723354	3	1	9	1	0	0	0	0	1	0	0	0	11342	652	23	1	70	1	OR9A2	7	142723354	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64536	142723354	16415309	9096	17247											
OR6V1	346517	broad.mit.edu	37	chr7	142749591	142749591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatggtcatagctgacaccCacctacatacacccatgtac	5	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142749591	A	A	142749591	3	1	9	1	0	0	0	0	1	0	0	0	11305	594	21	2	156	2	OR6V1	7	142749591	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26237	142749591	16389072	9097	17248											
OR6V1	346517	broad.mit.edu	37	chr7	142749752	142749752	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacttccacttttccctGgggtccacctccttcctcat	4	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142749752	T	T	142749752	2	4	9	1	0	0	0	0	0	0	0	1	11305	1335	47	2		2	OR6V1	7	142749752	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	161	142749752	16388911	9098	17249											
PIP	5304	broad.mit.edu	37	chr7	142829157	142829157	+	5'Flank	SNP	G	T	T													ctgtatataagaaatgtgctGggcacctgggacaccacttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142829157	T	T	142829157	1	4	9	0	1	0	0	0	0	0	0	0	12030	1363	47	2		2	PIP	7	142829157	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	79405	142829157	16309506	9099	17250	112	2									
PIP	5304	broad.mit.edu	37	chr7	142829165	142829165	+	5'Flank	SNP	G	T	T													aagaaatgtgctgggcacctGggacaccacttctctgggac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142829165	T	T	142829165	1	4	9	0	1	0	0	0	0	0	0	0	12030	1363	47	2		2	PIP	7	142829165	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	8	142829165	16309498	9100	17251	112	2									
PIP	5304	broad.mit.edu	37	chr7	142836647	142836647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgtcgttgatgttattcGggaattaggcatctgccctg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142836647	T	T	142836647	3	4	9	1	0	0	0	0	1	0	0	0	12030	1116	39	1	367	1	PIP	7	142836647	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7482	142836647	16302016	9101	17252											
TAS2R39	259285	broad.mit.edu	37	chr7	142880888	142880888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaatttttgtagcctgtGgtttgctgcctggctcagtt	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142880888	T	T	142880888	3	4	9	1	0	0	0	0	1	0	0	0	15695	1357	47	2	379	2	TAS2R39	7	142880888	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44241	142880888	16257775	9102	17253											
GSTK1	373156	broad.mit.edu	37	chr7	142961667	142961667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctccaggtctgcttcccCgcaaaggactatacatggca	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142961667	A	A	142961667	3	1	9	1	0	0	0	0	1	0	0	0	6902	652	23	1	191	1	GSTK1	7	142961667	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80779	142961667	16176996	9103	17254											
GSTK1	373156	broad.mit.edu	37	chr7	142965211	142965211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcccatcaccgtggccCatgtggatggccaaacccac	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142965211	A	A	142965211	3	1	9	1	0	0	0	0	1	0	0	0	6902	594	21	2	755	2	GSTK1	7	142965211	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3544	142965211	16173452	9104	17255											
GSTK1	373156	broad.mit.edu	37	chr7	142965229	142965229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgtggatggccaaaccCacatgttatttggctctgac	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142965229	A	A	142965229	3	1	9	1	0	0	0	0	1	0	0	0	6902	594	21	2	773	2	GSTK1	7	142965229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	142965229	16173434	9105	17256											
CASP2	835	broad.mit.edu	37	chr7	142989401	142989401	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgtcttaggccaaagtGggcagtttcagccagaatgt	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142989401	T	T	142989401	2	4	9	1	0	0	0	0	0	0	0	1	2697	1335	47	2		2	CASP2	7	142989401	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24172	142989401	16149262	9106	17257											
CLCN1	1180	broad.mit.edu	37	chr7	143018843	143018843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaagacaatacttcgtGgggttgtcctgaaggaatac	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143018843	T	T	143018843	3	4	9	1	0	0	0	0	1	0	0	0	3493	1348	47	2	616	2	CLCN1	7	143018843	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29442	143018843	16119820	9107	17258											
FAM131B	9715	broad.mit.edu	37	chr7	143053749	143053749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctcagggtcttctcgtGgggaaagtgactccaggtcc	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143053749	T	T	143053749	3	4	9	1	0	0	0	0	1	0	0	0	5486	1348	47	2	109	2	FAM131B	7	143053749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34906	143053749	16084914	9108	17259											
FAM131B	9715	broad.mit.edu	37	chr7	143053778	143053778	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccaggtcccggcatccCgcatcctcttcctcctcagg	8	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143053778	A	A	143053778	2	1	9	1	0	0	0	0	0	0	0	1	5486	639	23	1		1	FAM131B	7	143053778	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	143053778	16084885	9109	17260											
ZYX	7791	broad.mit.edu	37	chr7	143079776	143079776	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgatcctttcaaagccCgggtaagggaccggagagta	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143079776	A	A	143079776	2	1	9	1	0	0	0	0	0	0	0	1	18383	643	23	1		1	ZYX	7	143079776	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25998	143079776	16058887	9110	17261											
ZYX	7791	broad.mit.edu	37	chr7	143079788	143079788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagcccgggtaagggacCggagagtaggaaaagcaggg	17	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143079788	A	A	143079788	1	1	9	0	1	0	0	0	0	0	0	0	18383	667	23	1		1	ZYX	7	143079788	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	143079788	16058875	9111	17262											
EPHA1	2041	broad.mit.edu	37	chr7	143091322	143091322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccataaggcttgtcccCaaagctcagcacctcccaca	5	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143091322	A	A	143091322	3	1	9	1	0	0	0	0	1	0	0	0	5207	594	21	2	479	2	EPHA1	7	143091322	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11534	143091322	16047341	9112	17263											
EPHA1	2041	broad.mit.edu	37	chr7	143092464	143092464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggtggctaaactggccCatgatagttgcctctcgaag	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143092464	A	A	143092464	3	1	9	1	0	0	0	0	1	0	0	0	5207	594	21	2	927	2	EPHA1	7	143092464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1142	143092464	16046199	9113	17264											
EPHA1	2041	broad.mit.edu	37	chr7	143098569	143098569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagctccacgtggacgcGggaagcctcctccccgcggt	13	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143098569	T	T	143098569	3	4	9	1	0	0	0	0	1	0	0	0	5207	1116	39	1	2714	1	EPHA1	7	143098569	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6105	143098569	16040094	9114	17265											
EPHA1	2041	broad.mit.edu	37	chr7	143098671	143098671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatgtacaggggtgtccCattcagtatctgttgctgtt	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143098671	A	A	143098671	3	1	9	1	0	0	0	0	1	0	0	0	5207	594	21	2	2816	2	EPHA1	7	143098671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	143098671	16039992	9115	17266											
EPHA1	2041	broad.mit.edu	37	chr7	143104714	143104714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacacttaccccatcttttGggggatccagcagccagccc	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143104714	T	T	143104714	3	4	9	1	0	0	0	0	1	0	0	0	5207	1348	47	2	2858	2	EPHA1	7	143104714	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6043	143104714	16033949	9116	17267											
TAS2R60	338398	broad.mit.edu	37	chr7	143140844	143140844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtttctagctttccagtGggacttcctgaatgctgcca	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143140844	T	T	143140844	3	4	9	1	0	0	0	0	1	0	0	0	15704	1357	47	2	301	2	TAS2R60	7	143140844	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36130	143140844	15997819	9117	17268											
TAS2R60	338398	broad.mit.edu	37	chr7	143141102	143141102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcactggcgatagcatacGgagctactgtgagaaattct	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143141102	T	T	143141102	3	4	9	1	0	0	0	0	1	0	0	0	15704	1116	39	1	559	1	TAS2R60	7	143141102	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	258	143141102	15997561	9118	17269											
TAS2R60	338398	broad.mit.edu	37	chr7	143141132	143141132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaattctatctcttccCtctaaaaatgattacttgga	5	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143141132	A	A	143141132	3	1	9	1	0	0	0	0	1	0	0	0	15704	681	24	2	589	2	TAS2R60	7	143141132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	143141132	15997531	9119	17270											
OR2F1	26211	broad.mit.edu	37	chr7	143657134	143657134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagtgactgggacactcGggtctccctgtttgtcctgt	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143657134	T	T	143657134	3	4	9	1	0	0	0	0	1	0	0	0	11090	1116	39	1	73	1	OR2F1	7	143657134	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	516002	143657134	15481529	9120	17271											
OR6B1	135946	broad.mit.edu	37	chr7	143701744	143701744	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattactgtcctgtcctacGgatgcattctggccaccata	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143701744	T	T	143701744	4	4	9	1	0	0	0	0	0	1	0	0	11281	1117	39	1	657	1	OR6B1	7	143701744	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44610	143701744	15436919	9121	17272											
OR6B1	135946	broad.mit.edu	37	chr7	143701776	143701776	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccatattatgcatgccCacaggaaagcagaaagcgtt	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143701776	A	A	143701776	2	1	9	1	0	0	0	0	0	0	0	1	11281	581	21	2		2	OR6B1	7	143701776	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	143701776	15436887	9122	17273											
OR2A5	393046	broad.mit.edu	37	chr7	143747839	143747839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactgagtgtctcatcttGgtaatgatgtcctacgatcg	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143747839	T	T	143747839	3	4	9	1	0	0	0	0	1	0	0	0	11075	1339	47	2	347	2	OR2A5	7	143747839	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46063	143747839	15390824	9123	17274											
OR2A5	393046	broad.mit.edu	37	chr7	143747859	143747859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaatgatgtcctacgatcGgtacatggctatctgccacc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143747859	T	T	143747859	3	4	9	1	0	0	0	0	1	0	0	0	11075	1116	39	1	367	1	OR2A5	7	143747859	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	143747859	15390804	9124	17275											
OR2A5	393046	broad.mit.edu	37	chr7	143747940	143747940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctggctgtcacttcttGggcatgtggttcccttctgg	12	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143747940	T	T	143747940	3	4	9	1	0	0	0	0	1	0	0	0	11075	1357	47	2	448	2	OR2A5	7	143747940	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81	143747940	15390723	9125	17276											
OR2A25	392138	broad.mit.edu	37	chr7	143771855	143771855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttttctgtgaaattatGgctgttctcaaacttgcctg	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143771855	T	T	143771855	3	4	9	1	0	0	0	0	1	0	0	0	11072	1348	47	2	545	2	OR2A25	7	143771855	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23915	143771855	15366808	9126	17277											
OR2A25	392138	broad.mit.edu	37	chr7	143771879	143771879	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctcaaacttgcctgtgcGgatacccacattaatgaggt	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143771879	T	T	143771879	2	4	9	1	0	0	0	0	0	0	0	1	11072	1103	39	1		1	OR2A25	7	143771879	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	143771879	15366784	9127	17278											
OR2A12	346525	broad.mit.edu	37	chr7	143792312	143792312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctattctacagcttaaccCtgatgggaaatgggattatc	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143792312	A	A	143792312	3	1	9	1	0	0	0	0	1	0	0	0	11069	680	24	2	114	2	OR2A12	7	143792312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20433	143792312	15346351	9128	17279											
OR2A12	346525	broad.mit.edu	37	chr7	143793045	143793045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttacagccttttcaaccCgatcctgaaccccctcatct	4	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143793045	A	A	143793045	3	1	9	1	0	0	0	0	1	0	0	0	11069	652	23	1	847	1	OR2A12	7	143793045	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	733	143793045	15345618	9129	17280											
OR2A2	442361	broad.mit.edu	37	chr7	143807159	143807159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtacatgaaattctcCttctaaggttgcccttctgt	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143807159	A	A	143807159	3	1	9	1	0	0	0	0	1	0	0	0	11071	681	24	2	486	2	OR2A2	7	143807159	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14114	143807159	15331504	9130	17281											
OR2A2	442361	broad.mit.edu	37	chr7	143807250	143807250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcctgtgctgacacctGggttaaccaagtggtcatat	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143807250	T	T	143807250	3	4	9	1	0	0	0	0	1	0	0	0	11071	1357	47	2	577	2	OR2A2	7	143807250	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	143807250	15331413	9131	17282											
OR2A14	135941	broad.mit.edu	37	chr7	143826710	143826710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagcctgcccttctgcGggcctcatgaaatcaaccac	8	16	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143826710	T	T	143826710	3	4	9	1	0	0	0	0	1	0	0	0	11070	1116	39	1	507	1	OR2A14	7	143826710	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19460	143826710	15311953	9132	17283											
ARHGEF35	445328	broad.mit.edu	37	chr7	143884177	143884177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggactctgtctgagtccCgggaatctgagtcacgagat	12	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143884177	A	A	143884177	3	1	9	1	0	0	0	0	1	0	0	0	907	652	23	1	158	1	ARHGEF35	7	143884177	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57467	143884177	15254486	9133	17284											
ARHGEF5	7984	broad.mit.edu	37	chr7	144070328	144070328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgtccagagtatgcgacGgacagaggaactaatctacc	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144070328	T	T	144070328	3	4	9	1	0	0	0	0	1	0	0	0	911	1116	39	1	4125	1	ARHGEF5	7	144070328	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	186151	144070328	15068335	9134	17285											
TPK1	27010	broad.mit.edu	37	chr7	144320355	144320355	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaaatgagctcacatccCtatgtattaaagtaaaagaa	7	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144320355	A	A	144320355	5	1	9	1	0	0	0	0	0	0	1	0	16528	695	24	2	489	2	TPK1	7	144320355	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	250027	144320355	14818308	9135	17286											
TPK1	27010	broad.mit.edu	37	chr7	144380048	144380048	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataagcggttggcacctcCatcggcacaggctcttaaaa	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144380048	A	A	144380048	4	1	9	1	0	0	0	0	0	1	0	0	16528	603	21	2	616	2	TPK1	7	144380048	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59693	144380048	14758615	9136	17287											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741065	146741065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcatccgattattgccCgctatgtgcgcatagtgcct	9	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146741065	A	A	146741065	3	1	9	1	0	0	0	0	1	0	0	0	3679	652	23	1	483	1	CNTNAP2	7	146741065	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2361017	146741065	12397598	9137	17288											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092734	147092734	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgaataactcaagtcactCtgtccttcagccttcattcc	5	13	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147092734	A	A	147092734	3	1	9	1	0	0	0	0	1	0	0	0	3679	913	32	3	1570	3	CNTNAP2	7	147092734	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	351669	147092734	12045929	9138	17289											
CNTNAP2	26047	broad.mit.edu	37	chr7	147869452	147869452	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttcatatccggatgctcGggccattgcaccagctatgg	13	11	1	0	rs148104020	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147869452	T	T	147869452	2	4	9	1	0	0	0	0	0	0	0	1	3679	1103	39	1		1	CNTNAP2	7	147869452	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	776718	147869452	11269211	9139	17290											
CNTNAP2	26047	broad.mit.edu	37	chr7	148112574	148112574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgatccggtacatgttcCgccacaagggcacctaccat	8	15	0	1	rs138661307		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148112574	A	A	148112574	3	1	9	1	0	0	0	0	1	0	0	0	3679	652	23	1	3956	1	CNTNAP2	7	148112574	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	243122	148112574	11026089	9140	17291											
CNTNAP2	26047	broad.mit.edu	37	chr7	148112658	148112658	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgccatcatgaacaacgacCccaacttcacagagaccatt	5	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148112658	T	T	148112658	3	4	9	1	0	0	0	0	1	0	0	0	3679	623	22	4	4040	4	CNTNAP2	7	148112658	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	148112658	11026005	9141	17292											
CUL1	8454	broad.mit.edu	37	chr7	148427129	148427129	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgaataaatttggaatGgtactgtatattttcatcta	8	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148427129	T	T	148427129	1	4	9	0	1	0	0	0	0	0	0	0	4087	1363	47	2		2	CUL1	7	148427129	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	314471	148427129	10711534	9142	17293											
CUL1	8454	broad.mit.edu	37	chr7	148484066	148484066	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggttaagtgtgttgtctCggtggctttgccagatggtt	15	6	1	1	rs145393587	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148484066	A	A	148484066	1	1	9	0	1	0	0	0	0	0	0	0	4087	899	31	3		3	CUL1	7	148484066	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56937	148484066	10654597	9143	17294											
EZH2	2146	broad.mit.edu	37	chr7	148506462	148506462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaattttgttacccttgcGggttgcatccaccacaaaat	7	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148506462	T	T	148506462	3	4	9	1	0	0	0	0	1	0	0	0	5377	1116	39	1	217	1	EZH2	7	148506462	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22396	148506462	10632201	9144	17295											
EZH2	2146	broad.mit.edu	37	chr7	148511155	148511155	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcagggtcacactctcGgacagccaggtagcacgggc	15	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148511155	T	T	148511155	2	4	9	1	0	0	0	0	0	0	0	1	5377	1124	39	1		1	EZH2	7	148511155	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4693	148511155	10627508	9145	17296											
EZH2	2146	broad.mit.edu	37	chr7	148511213	148511213	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctttgcagcggcatccCggaaagcggttttgaccttc	12	11	0	1	rs144723981		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148511213	A	A	148511213	2	1	9	1	0	0	0	0	0	0	0	1	5377	639	23	1		1	EZH2	7	148511213	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	148511213	10627450	9146	17297											
EZH2	2146	broad.mit.edu	37	chr7	148512509	148512509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaattatattagaataaccCaagctctaatccagttacta	4	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148512509	A	A	148512509	1	1	9	0	1	0	0	0	0	0	0	0	5377	609	21	2		2	EZH2	7	148512509	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1296	148512509	10626154	9147	17298											
EZH2	2146	broad.mit.edu	37	chr7	148524282	148524282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagttcttctgctgtgccCttatctggaaacattgagga	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148524282	A	A	148524282	3	1	9	1	0	0	0	0	1	0	0	0	5377	680	24	2	1609	2	EZH2	7	148524282	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11773	148524282	10614381	9148	17299											
EZH2	2146	broad.mit.edu	37	chr7	148544378	148544378	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccttctcagatttcttccCagtctggcccatgattattc	5	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148544378	G	G	148544378	3	3	9	1	0	0	0	0	1	0	0	0	5377	594	21	4	2318	4	EZH2	7	148544378	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20096	148544378	10594285	9149	17300											
PDIA4	9601	broad.mit.edu	37	chr7	148701246	148701246	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccaccacgaccttgacGggtcccttgttgttcttggg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148701246	T	T	148701246	2	4	9	1	0	0	0	0	0	0	0	1	11764	1103	39	1		1	PDIA4	7	148701246	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	156868	148701246	10437417	9150	17301											
PDIA4	9601	broad.mit.edu	37	chr7	148716217	148716217	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatcttggcaacaggaatGggaggatctttatcctttaa	10	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148716217	T	T	148716217	2	4	9	1	0	0	0	0	0	0	0	1	11764	1335	47	2		2	PDIA4	7	148716217	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14971	148716217	10422446	9151	17302											
ZNF786	136051	broad.mit.edu	37	chr7	148767441	148767441	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaaacccgtctaccagcGggtctggctactgttgctgt	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148767441	T	T	148767441	1	4	9	0	1	0	0	0	0	0	0	0	18287	1131	39	1		1	ZNF786	7	148767441	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	51224	148767441	10371222	9152	17303											
ZNF425	155054	broad.mit.edu	37	chr7	148800979	148800979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactggaagggcttctcccCgctgtggactcgaatgtgtt	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148800979	A	A	148800979	3	1	9	1	0	0	0	0	1	0	0	0	18026	652	23	1	278	1	ZNF425	7	148800979	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33538	148800979	10337684	9153	17304											
ZNF425	155054	broad.mit.edu	37	chr7	148802439	148802439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagcgccctggggtctccCgaggcttatgccgcaggtct	13	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148802439	A	A	148802439	3	1	9	1	0	0	0	0	1	0	0	0	18026	652	23	1	1738	1	ZNF425	7	148802439	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1460	148802439	10336224	9154	17305											
ZNF425	155054	broad.mit.edu	37	chr7	148809282	148809282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaactgttcatcagtaggaGggctagttgtccttcttgtt	10	8	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148809282	T	T	148809282	3	4	9	1	0	0	0	0	1	0	0	0	18026	1000	35	2	2015	2	ZNF425	7	148809282	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6843	148809282	10329381	9155	17306											
ZNF282	8427	broad.mit.edu	37	chr7	148903720	148903720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagtgggtcttgtggccCgcaggagaaggggaggtggt	23	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148903720	A	A	148903720	1	1	9	0	1	0	0	0	0	0	0	0	17945	667	23	1		1	ZNF282	7	148903720	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94438	148903720	10234943	9156	17307											
ZNF777	27153	broad.mit.edu	37	chr7	149129362	149129362	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaagctcttcttgcactcGgggcacgtgtagggccgctc	14	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149129362	T	T	149129362	2	4	9	1	0	0	0	0	0	0	0	1	18279	1103	39	1		1	ZNF777	7	149129362	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	225642	149129362	10009301	9157	17308											
ZNF777	27153	broad.mit.edu	37	chr7	149129541	149129541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggggttgaacgtgggccCgcgttcgggtgagacgcagc	18	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149129541	A	A	149129541	3	1	9	1	0	0	0	0	1	0	0	0	18279	652	23	1	677	1	ZNF777	7	149129541	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	179	149129541	10009122	9158	17309											
SSPO	23145	broad.mit.edu	37	chr7	149474054	149474054	+	Frame_Shift_Del	DEL	C	-	-													acccggcctgccaagtggaaCcggacagtgaggacttgttg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149474054	-	-	149474054	7	5	9	1	0	1	0	1	0	0	0	0	15307	506	18	0	274	0	SSPO	7	149474054	Frame_Shift_Del	DEL	C	TCGA-05-4396-01A-21D-1855-08	344513	149474054	9664609	9159	17310											
SSPO	23145	broad.mit.edu	37	chr7	149481949	149481949	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcctctggaattgcacGgctcgccactgcccttcaca	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149481949	T	T	149481949	2	4	9	1	0	0	0	0	0	0	0	1	15307	1103	39	1		1	SSPO	7	149481949	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7895	149481949	9656714	9160	17311											
ZNF862	643641	broad.mit.edu	37	chr7	149557636	149557636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaggacatacaggcccCgttccattcagaggtcatgg	11	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149557636	A	A	149557636	3	1	9	1	0	0	0	0	1	0	0	0	18324	652	23	1	1413	1	ZNF862	7	149557636	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75687	149557636	9581027	9161	17312											
ACTR3C	653857	broad.mit.edu	37	chr7	149983460	149983460	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaacaccttacctccGggtgaaagaatatttcaggt	8	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149983460	C	C	149983460	3	2	9	1	0	0	0	0	1	0	0	0	214	1116	39	4	177	4	ACTR3C	7	149983460	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	425824	149983460	9155203	9162	17313											
GIMAP8	155038	broad.mit.edu	37	chr7	150164053	150164053	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccaacactgcttggagctCtctgctcccagcctccatgc	7	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150164053	A	A	150164053	2	1	9	1	0	0	0	0	0	0	0	1	6449	900	32	3		3	GIMAP8	7	150164053	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	180593	150164053	8974610	9163	17314											
GIMAP7	168537	broad.mit.edu	37	chr7	150217709	150217709	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaaaggctgaaacaacGggaagaggttttgaggaaaa	15	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150217709	T	T	150217709	3	4	9	1	0	0	0	0	1	0	0	0	6448	1116	39	1	649	1	GIMAP7	7	150217709	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53656	150217709	8920954	9164	17315											
GIMAP6	474344	broad.mit.edu	37	chr7	150325221	150325221	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaccaggatggtgtgaccCagaacccccactccaaagac	8	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150325221	A	A	150325221	2	1	9	1	0	0	0	0	0	0	0	1	6447	581	21	2		2	GIMAP6	7	150325221	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	107512	150325221	8813442	9165	17316											
GIMAP1	170575	broad.mit.edu	37	chr7	150417159	150417159	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagagaacgctcagtccCggcaggagtccacgcggagg	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150417159	A	A	150417159	2	1	9	1	0	0	0	0	0	0	0	1	6443	643	23	1		1	GIMAP1	7	150417159	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	91938	150417159	8721504	9166	17317											
GIMAP5	55340	broad.mit.edu	37	chr7	150439760	150439760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgaaagacctggtgcGggagtgtgagagaaggtact	16	7	0	4	rs147182394	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150439760	T	T	150439760	3	4	9	1	0	0	0	0	1	0	0	0	6446	1116	39	1	539	1	GIMAP5	7	150439760	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22601	150439760	8698903	9167	17318											
TMEM176A	55365	broad.mit.edu	37	chr7	150500762	150500762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccacagccatcgctgccCtcaaactttggaatgaagat	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150500762	A	A	150500762	3	1	9	1	0	0	0	0	1	0	0	0	16215	681	24	2	411	2	TMEM176A	7	150500762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61002	150500762	8637901	9168	17319											
ABP1	26	broad.mit.edu	37	chr7	150555928	150555928	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccaagacaccgcgtgGtccagccaactctggagcag	13	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150555928	A	A	150555928	3	1	9	1	0	0	0	0	1	0	0	0	98	1261	44	4	1654	4	ABP1	7	150555928	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55166	150555928	8582735	9169	17320											
KCNH2	3757	broad.mit.edu	37	chr7	150646078	150646078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagggcccgcacatcccCgttcgacttgccaggccttg	13	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150646078	A	A	150646078	3	1	9	1	0	0	0	0	1	0	0	0	8102	652	23	1	1045	1	KCNH2	7	150646078	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90150	150646078	8492585	9170	17321											
NOS3	4846	broad.mit.edu	37	chr7	150696368	150696368	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgggggcctggagttcccCgcagcccccttcagtggctg	14	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150696368	A	A	150696368	2	1	9	1	0	0	0	0	0	0	0	1	10639	639	23	1		1	NOS3	7	150696368	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50290	150696368	8442295	9171	17322											
ABCB8	11194	broad.mit.edu	37	chr7	150731607	150731607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagggactgctgaccttcGggtacctggtgctgctgtcc	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150731607	T	T	150731607	3	4	9	1	0	0	0	0	1	0	0	0	47	1116	39	1	594	1	ABCB8	7	150731607	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35239	150731607	8407056	9172	17323											
ACCN3	9311	broad.mit.edu	37	chr7	150746232	150746232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccaccggctcatcttccCggctgtcaccctgtgcaaca	8	17	3	0	rs140048490		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150746232	A	A	150746232	3	1	9	1	0	0	0	0	1	0	0	0	130	652	23	1	262	1	ACCN3	7	150746232	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14625	150746232	8392431	9173	17324											
AGAP3	116988	broad.mit.edu	37	chr7	150817255	150817255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgactgccctcctccccCgcccagctgcctttgctgca	8	20	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150817255	A	A	150817255	1	1	9	0	1	0	0	0	0	0	0	0	369	667	23	1		1	AGAP3	7	150817255	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	71023	150817255	8321408	9174	17325											
AGAP3	116988	broad.mit.edu	37	chr7	150820811	150820811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggcaggagggaggccGggaagtccaggtgggcagct	22	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150820811	T	T	150820811	1	4	9	0	1	0	0	0	0	0	0	0	369	1131	39	1		1	AGAP3	7	150820811	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3556	150820811	8317852	9175	17326											
GBX1	2636	broad.mit.edu	37	chr7	150864166	150864166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctctgccactttctccCgggccggcagcagctcatca	12	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150864166	A	A	150864166	3	1	9	1	0	0	0	0	1	0	0	0	6342	652	23	1	628	1	GBX1	7	150864166	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43355	150864166	8274497	9176	17327											
ABCF2	10061	broad.mit.edu	37	chr7	150912719	150912719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtgagaccgtatcgccCaatgatcttcctcatttctt	6	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912719	A	A	150912719	3	1	9	1	0	0	0	0	1	0	0	0	66	594	21	2	423	2	ABCF2	7	150912719	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48553	150912719	8225944	9177	17328											
ABCF2	10061	broad.mit.edu	37	chr7	150918650	150918650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagattaccagaagaagcCgaggcccactcaccgtataa	9	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150918650	A	A	150918650	1	1	9	0	1	0	0	0	0	0	0	0	66	667	23	1		1	ABCF2	7	150918650	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5931	150918650	8220013	9178	17329											
SMARCD3	6604	broad.mit.edu	37	chr7	150939302	150939302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaaagaagagaacttcCgcttctgtttgctgggctgt	12	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150939302	A	A	150939302	3	1	9	1	0	0	0	0	1	0	0	0	14893	652	23	1	887	1	SMARCD3	7	150939302	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20652	150939302	8199361	9179	17330											
NUB1	51667	broad.mit.edu	37	chr7	151046281	151046281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgacaattatagaacaacGggaattgctacaatcgaggt	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151046281	T	T	151046281	2	4	9	1	0	0	0	0	0	0	0	1	10809	1103	39	1		1	NUB1	7	151046281	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	106979	151046281	8092382	9180	17331											
WDR86	349136	broad.mit.edu	37	chr7	151093347	151093347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaatccacacagcctccCgacatgccatgctcggcact	7	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151093347	A	A	151093347	1	1	9	0	1	0	0	0	0	0	0	0	17461	667	23	1		1	WDR86	7	151093347	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47066	151093347	8045316	9181	17332											
PRKAG2	51422	broad.mit.edu	37	chr7	151254305	151254305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcactccgtttctgtctcCttttgtttggcacctgtcag	9	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151254305	A	A	151254305	3	1	9	1	0	0	0	0	1	0	0	0	12607	680	24	2	21	2	PRKAG2	7	151254305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160958	151254305	7884358	9182	17333											
PRKAG2	51422	broad.mit.edu	37	chr7	151263005	151263005	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgcaaacgttctagaccCagaacacactcttgtcatgt	6	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151263005	A	A	151263005	1	1	9	0	1	0	0	0	0	0	0	0	12607	609	21	2		2	PRKAG2	7	151263005	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8700	151263005	7875658	9183	17334											
GALNTL5	168391	broad.mit.edu	37	chr7	151684334	151684334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagagagaggggctgattcGagcaaggctgattggagctt	16	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151684334	T	T	151684334	3	4	9	1	0	0	0	0	1	0	0	0	6286	1058	37	3	640	3	GALNTL5	7	151684334	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	421329	151684334	7454329	9184	17335											
GALNT11	63917	broad.mit.edu	37	chr7	151810346	151810346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagatctggatgtgtggcGgtaagctcttcatcatccct	11	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151810346	T	T	151810346	3	4	9	1	0	0	0	0	1	0	0	0	6271	1116	39	1	1122	1	GALNT11	7	151810346	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126012	151810346	7328317	9185	17336											
GALNT11	63917	broad.mit.edu	37	chr7	151810391	151810391	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagagtaggacacattttcCgaaaaaggcgaccatatgga	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151810391	A	A	151810391	2	1	9	1	0	0	0	0	0	0	0	1	6271	644	23	1		1	GALNT11	7	151810391	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45	151810391	7328272	9186	17337											
MLL3	58508	broad.mit.edu	37	chr7	151845608	151845608	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcatccactagtggcaccCgtcttgtgacagaagacaca	10	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151845608	A	A	151845608	2	1	9	1	0	0	0	0	0	0	0	1	9715	639	23	1		1	MLL3	7	151845608	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35217	151845608	7293055	9187	17338											
MLL3	58508	broad.mit.edu	37	chr7	151856047	151856047	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggtgctgctttctcaccCgtcctctgagtccgtttgct	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151856047	A	A	151856047	2	1	9	1	0	0	0	0	0	0	0	1	9715	639	23	1		1	MLL3	7	151856047	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10439	151856047	7282616	9188	17339											
MLL3	58508	broad.mit.edu	37	chr7	151860306	151860306	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagtcggaactgtagaaGggaatctgggacacagatgt	15	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151860306	T	T	151860306	2	4	9	1	0	0	0	0	0	0	0	1	9715	987	35	2		2	MLL3	7	151860306	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4259	151860306	7278357	9189	17340											
MLL3	58508	broad.mit.edu	37	chr7	151877125	151877125	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctggatgaggcactgcGggtgagtcctgtgacccctt	15	12	0	3	rs140215243		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151877125	T	T	151877125	2	4	9	1	0	0	0	0	0	0	0	1	9715	1103	39	1		1	MLL3	7	151877125	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16819	151877125	7261538	9190	17341											
MLL3	58508	broad.mit.edu	37	chr7	151878059	151878059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgatcatagggatcacGggcagcagatggggaaacac	14	8	2	3	rs141524207		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151878059	T	T	151878059	3	4	9	1	0	0	0	0	1	0	0	0	9715	1116	39	1	7945	1	MLL3	7	151878059	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	934	151878059	7260604	9191	17342											
MLL3	58508	broad.mit.edu	37	chr7	151878999	151878999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggagaccgggataggccCaaggatttgggaaattgatc	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151878999	A	A	151878999	3	1	9	1	0	0	0	0	1	0	0	0	9715	593	21	2	8885	2	MLL3	7	151878999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	940	151878999	7259664	9192	17343											
MLL3	58508	broad.mit.edu	37	chr7	151879433	151879433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgaagatgtagacgtagGggtactgggtggctgttttg	16	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151879433	T	T	151879433	3	4	9	1	0	0	0	0	1	0	0	0	9715	1232	43	2	9319	2	MLL3	7	151879433	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	434	151879433	7259230	9193	17344											
MLL3	58508	broad.mit.edu	37	chr7	151879798	151879798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgctaccagattgctccCatattagattatgaattcct	6	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151879798	A	A	151879798	1	1	9	0	1	0	0	0	0	0	0	0	9715	609	21	2		2	MLL3	7	151879798	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	365	151879798	7258865	9194	17345											
MLL3	58508	broad.mit.edu	37	chr7	151880108	151880108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattctctttgctttaaaGgatctttaaaaagctccgaa	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151880108	T	T	151880108	3	4	9	1	0	0	0	0	1	0	0	0	9715	1000	35	2	9619	2	MLL3	7	151880108	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	310	151880108	7258555	9195	17346											
MLL3	58508	broad.mit.edu	37	chr7	151880136	151880136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaagctccgaatcaatacGagagctgggatcaatgctat	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151880136	T	T	151880136	3	4	9	1	0	0	0	0	1	0	0	0	9715	1058	37	3	9647	3	MLL3	7	151880136	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	151880136	7258527	9196	17347											
MLL3	58508	broad.mit.edu	37	chr7	151884920	151884920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccattcatgagaggcatcCgtgaaaaagcatcttcagag	11	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151884920	A	A	151884920	3	1	9	1	0	0	0	0	1	0	0	0	9715	652	23	1	10174	1	MLL3	7	151884920	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4784	151884920	7253743	9197	17348											
MLL3	58508	broad.mit.edu	37	chr7	151904465	151904465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatcatccacagcttccCgctcaggactagattctgat	6	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151904465	A	A	151904465	3	1	9	1	0	0	0	0	1	0	0	0	9715	652	23	1	11118	1	MLL3	7	151904465	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19545	151904465	7234198	9198	17349											
MLL3	58508	broad.mit.edu	37	chr7	151945044	151945044	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtaatagctggtttaccCatgccaatttttggagtgac	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151945044	A	A	151945044	3	1	9	1	0	0	0	0	1	0	0	0	9715	594	21	2	12444	2	MLL3	7	151945044	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40579	151945044	7193619	9199	17350											
MLL3	58508	broad.mit.edu	37	chr7	151960209	151960209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcttgctatcttctccCgattgtctaaaaaataagat	5	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151960209	A	A	151960209	2	1	9	1	0	0	0	0	0	0	0	1	9715	639	23	1		1	MLL3	7	151960209	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15165	151960209	7178454	9200	17351											
MLL3	58508	broad.mit.edu	37	chr7	151962185	151962185	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgttttaatggagtaacCgctatatccaggcacattcc	8	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151962185	A	A	151962185	2	1	9	1	0	0	0	0	0	0	0	1	9715	639	23	1		1	MLL3	7	151962185	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1976	151962185	7176478	9201	17352											
ACTR3B	57180	broad.mit.edu	37	chr7	152520513	152520513	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggatcaaacagtacacGggtatcaatgcgatcaacca	9	9	3	0	rs138407112		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152520513	T	T	152520513	2	4	9	1	0	0	0	0	0	0	0	1	213	1103	39	1		1	ACTR3B	7	152520513	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	558328	152520513	6618150	9202	17353											
ACTR3B	57180	broad.mit.edu	37	chr7	152522197	152522197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatcgatgtgcggcgccCgctgtataaggtatgagctg	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152522197	A	A	152522197	3	1	9	1	0	0	0	0	1	0	0	0	213	652	23	1	975	1	ACTR3B	7	152522197	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1684	152522197	6616466	9203	17354											
DPP6	1804	broad.mit.edu	37	chr7	154172103	154172103	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcaaaattcatgacccCgaggctaagtggataagtgg	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154172103	A	A	154172103	2	1	9	1	0	0	0	0	0	0	0	1	4770	639	23	1		1	DPP6	7	154172103	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1649906	154172103	4966560	9204	17355											
DPP6	1804	broad.mit.edu	37	chr7	154519519	154519519	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctactactgtgcacatgtcGggaaacaggccatccgtgtg	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154519519	T	T	154519519	3	4	9	1	0	0	0	0	1	0	0	0	4770	1116	39	1	951	1	DPP6	7	154519519	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	347416	154519519	4619144	9205	17356											
DPP6	1804	broad.mit.edu	37	chr7	154679411	154679411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgttttccgagaggtacttGggcctccatggacttgacaa	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154679411	T	T	154679411	3	4	9	1	0	0	0	0	1	0	0	0	4770	1339	47	2	2477	2	DPP6	7	154679411	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	159892	154679411	4459252	9206	17357											
PAXIP1	22976	broad.mit.edu	37	chr7	154739638	154739638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggagaaacgtgtgccCgttttaaggattcttccaag	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154739638	A	A	154739638	3	1	9	1	0	0	0	0	1	0	0	0	11581	652	23	1	332	1	PAXIP1	7	154739638	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60227	154739638	4399025	9207	17358											
PAXIP1	22976	broad.mit.edu	37	chr7	154759598	154759598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaattgcaaacacacatccCaataagaagccttcttctgg	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154759598	A	A	154759598	3	1	9	1	0	0	0	0	1	0	0	0	11581	593	21	2	1444	2	PAXIP1	7	154759598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19960	154759598	4379065	9208	17359											
INSIG1	3638	broad.mit.edu	37	chr7	155093298	155093298	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttggcctactgtacccCtgtatcgacagtcacctcgg	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155093298	A	A	155093298	2	1	9	1	0	0	0	0	0	0	0	1	7835	668	24	2		2	INSIG1	7	155093298	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	333700	155093298	4045365	9209	17360											
INSIG1	3638	broad.mit.edu	37	chr7	155093326	155093326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcacctcggagaacccCacaaatttaagagagaatgg	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155093326	A	A	155093326	3	1	9	1	0	0	0	0	1	0	0	0	7835	594	21	2	469	2	INSIG1	7	155093326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	155093326	4045337	9210	17361											
SHH	6469	broad.mit.edu	37	chr7	155604627	155604627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtttctggagatcttccCttcataccttccgctggcgc	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155604627	A	A	155604627	3	1	9	1	0	0	0	0	1	0	0	0	14392	681	24	2	1210	2	SHH	7	155604627	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	511301	155604627	3534036	9211	17362											
SHH	6469	broad.mit.edu	37	chr7	155604660	155604660	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggcgcctagggtcttctCggccacattggggataaact	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155604660	A	A	155604660	4	1	9	1	0	0	0	0	0	1	0	0	14392	893	31	3	1243	3	SHH	7	155604660	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	155604660	3534003	9212	17363											
RNF32	140545	broad.mit.edu	37	chr7	156450963	156450963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgaggacgccaggccCgtttggcgctaagcagacac	14	13	0	2	rs144520728	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156450963	A	A	156450963	1	1	9	0	1	0	0	0	0	0	0	0	13599	667	23	1		1	RNF32	7	156450963	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	846303	156450963	2687700	9213	17364											
LMBR1	64327	broad.mit.edu	37	chr7	156476736	156476736	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgtgaatctggagttctcGggtctcttggtggcagaaga	15	7	3	3	rs79881605	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156476736	T	T	156476736	1	4	9	0	1	0	0	0	0	0	0	0	8914	1131	39	1		1	LMBR1	7	156476736	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	25773	156476736	2661927	9214	17365											
LMBR1	64327	broad.mit.edu	37	chr7	156476824	156476824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggctgtttctgaatccCttgaagtatttggtaagtga	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156476824	A	A	156476824	3	1	9	1	0	0	0	0	1	0	0	0	8914	681	24	2	55	2	LMBR1	7	156476824	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	156476824	2661839	9215	17366											
LMBR1	64327	broad.mit.edu	37	chr7	156521377	156521377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accataacagcgggatacacCaaatttctttcccatgctga	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156521377	A	A	156521377	3	1	9	1	0	0	0	0	1	0	0	0	8914	593	21	2	624	2	LMBR1	7	156521377	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44553	156521377	2617286	9216	17367											
LMBR1	64327	broad.mit.edu	37	chr7	156554869	156554869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccatcactgtgaacatacGagaaaggccaactggtgtac	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156554869	T	T	156554869	3	4	9	1	0	0	0	0	1	0	0	0	8914	1058	37	3	869	3	LMBR1	7	156554869	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33492	156554869	2583794	9217	17368											
NOM1	64434	broad.mit.edu	37	chr7	156754916	156754916	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattccaggctatgacccCgagcccgtggagaagctgag	12	11	0	3	rs115466166	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156754916	A	A	156754916	2	1	9	1	0	0	0	0	0	0	0	1	10625	639	23	1		1	NOM1	7	156754916	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	200047	156754916	2383747	9218	17369											
NOM1	64434	broad.mit.edu	37	chr7	156759745	156759745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttggttcatctggtggccCacttgttgaagacaaaatcg	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156759745	A	A	156759745	3	1	9	1	0	0	0	0	1	0	0	0	10625	594	21	2	2291	2	NOM1	7	156759745	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4829	156759745	2378918	9219	17370											
UBE3C	9690	broad.mit.edu	37	chr7	156956496	156956496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctccttttttctctgtttGggtgtaggaggaaaaggctt	11	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156956496	T	T	156956496	1	4	9	0	1	0	0	0	0	0	0	0	17007	1363	47	2		2	UBE3C	7	156956496	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	196751	156956496	2182167	9220	17371											
UBE3C	9690	broad.mit.edu	37	chr7	156963049	156963049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctaccttgtcacagtccGggggcgcttttcccattgct	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156963049	T	T	156963049	3	4	9	1	0	0	0	0	1	0	0	0	17007	1116	39	1	261	1	UBE3C	7	156963049	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6553	156963049	2175614	9221	17372											
UBE3C	9690	broad.mit.edu	37	chr7	156974353	156974353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttacttacaactcctgtcCggaaggtgcgaggtgagact	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156974353	A	A	156974353	3	1	9	1	0	0	0	0	1	0	0	0	17007	652	23	1	784	1	UBE3C	7	156974353	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11304	156974353	2164310	9222	17373											
UBE3C	9690	broad.mit.edu	37	chr7	156976722	156976722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgacaagccctcaagccCggtaagccccgtgccctgca	10	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156976722	A	A	156976722	3	1	9	1	0	0	0	0	1	0	0	0	17007	666	23	1	1176	1	UBE3C	7	156976722	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2369	156976722	2161941	9223	17374											
UBE3C	9690	broad.mit.edu	37	chr7	156990915	156990915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcagaccgcttacaaaaGgaattacccaatctgtatcc	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156990915	T	T	156990915	1	4	9	0	1	0	0	0	0	0	0	0	17007	1015	35	2		2	UBE3C	7	156990915	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14193	156990915	2147748	9224	17375											
UBE3C	9690	broad.mit.edu	37	chr7	156990966	156990966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgacattgaggtggtgtcCgtgggctcttgaagactgca	14	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156990966	A	A	156990966	1	1	9	0	1	0	0	0	0	0	0	0	17007	667	23	1		1	UBE3C	7	156990966	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	156990966	2147697	9225	17376											
UBE3C	9690	broad.mit.edu	37	chr7	157041171	157041171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctcgcctccctagaccCtgaggtgtataagaatttgc	8	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157041171	A	A	157041171	3	1	9	1	0	0	0	0	1	0	0	0	17007	681	24	2	2665	2	UBE3C	7	157041171	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50205	157041171	2097492	9226	17377											
UBE3C	9690	broad.mit.edu	37	chr7	157060371	157060371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacctgctgaagctcccCgagttctatgacgagacact	9	12	1	4	rs147977568	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157060371	A	A	157060371	2	1	9	1	0	0	0	0	0	0	0	1	17007	639	23	1		1	UBE3C	7	157060371	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19200	157060371	2078292	9227	17378											
DNAJB6	10049	broad.mit.edu	37	chr7	157208697	157208697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtacagtgttttacaagcCgtgtttccttaggattgaaa	9	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157208697	A	A	157208697	1	1	9	0	1	0	0	0	0	0	0	0	4664	667	23	1		1	DNAJB6	7	157208697	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	148326	157208697	1929966	9228	17379											
NCAPG2	54892	broad.mit.edu	37	chr7	158447310	158447310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcatgattccaagactcCgctgtaagagttgcatctga	9	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158447310	A	A	158447310	3	1	9	1	0	0	0	0	1	0	0	0	10303	652	23	1	736	1	NCAPG2	7	158447310	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1238613	158447310	691353	9229	17380											
NCAPG2	54892	broad.mit.edu	37	chr7	158476039	158476039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcggaaggtgtatccCgtggaacatgaagtcctgga	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158476039	A	A	158476039	3	1	9	1	0	0	0	0	1	0	0	0	10303	652	23	1	2634	1	NCAPG2	7	158476039	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28729	158476039	662624	9230	17381											
ESYT2	57488	broad.mit.edu	37	chr7	158529734	158529734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagctggataaaatacCgtacctttgatcaaacactg	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158529734	A	A	158529734	1	1	9	0	1	0	0	0	0	0	0	0	5307	667	23	1		1	ESYT2	7	158529734	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53695	158529734	608929	9231	17382											
ESYT2	57488	broad.mit.edu	37	chr7	158580768	158580768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacggttccaggatcaccCgcatggtaccatgaatctaa	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158580768	A	A	158580768	3	1	9	1	0	0	0	0	1	0	0	0	5307	652	23	1	1931	1	ESYT2	7	158580768	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51034	158580768	557895	9232	17383											
WDR60	55112	broad.mit.edu	37	chr7	158704304	158704304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttactttctctctcttGgatctaccaccagtaaatga	4	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158704304	T	T	158704304	3	4	9	1	0	0	0	0	1	0	0	0	17438	1339	47	2	1570	2	WDR60	7	158704304	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	123536	158704304	434359	9233	17384											
WDR60	55112	broad.mit.edu	37	chr7	158716279	158716279	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggtcacgtgttgctgcttGagccctttgaaagcattttt	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158716279	T	T	158716279	3	4	9	1	0	0	0	0	1	0	0	0	17438	1281	45	3	2178	3	WDR60	7	158716279	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11975	158716279	422384	9234	17385											
VIPR2	7434	broad.mit.edu	37	chr7	158824592	158824592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagatggtcaggcaggaccCgcgctcgggggagggcggcc	20	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158824592	A	A	158824592	1	1	9	0	1	0	0	0	0	0	0	0	17297	667	23	1		1	VIPR2	7	158824592	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	108313	158824592	314071	9235	17386											
VIPR2	7434	broad.mit.edu	37	chr7	158824640	158824640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacctacctggaacgaccCgaggcacagctcaaacagta	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158824640	A	A	158824640	3	1	9	1	0	0	0	0	1	0	0	0	17297	652	23	1	238	1	VIPR2	7	158824640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	158824640	314023	9236	17387											
VIPR2	7434	broad.mit.edu	37	chr7	158827336	158827336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtggtcgtttgtatccCagcaactgtcagagagagat	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158827336	A	A	158827336	3	1	9	1	0	0	0	0	1	0	0	0	17297	595	21	2	521	2	VIPR2	7	158827336	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2696	158827336	311327	9237	17388											
FBXO25	26260	broad.mit.edu	37	chr8	417780	417780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacacatcctgtgttcGggatgaaaacgttgcatcgt	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	417780	T	T	417780	1	4	9	0	1	0	0	0	0	0	0	0	5793	1131	39	1		1	FBXO25	8	417780	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08		417780	145946242	9238	17389											
ERICH1	157697	broad.mit.edu	37	chr8	623400	623400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcaccgtcctcctcccCggagtctgcaccctcttcct	7	20	3	0	rs142191174		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	623400	A	A	623400	3	1	9	1	0	0	0	0	1	0	0	0	5272	652	23	1	391	1	ERICH1	8	623400	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	205620	623400	145740622	9239	17390											
ERICH1	157697	broad.mit.edu	37	chr8	642493	642493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaccttctgtgtcatcccCgctggaggcgttctcggggc	12	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	642493	A	A	642493	3	1	9	1	0	0	0	0	1	0	0	0	5272	652	23	1	1058	1	ERICH1	8	642493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19093	642493	145721529	9240	17391											
ARHGEF10	9639	broad.mit.edu	37	chr8	1824845	1824845	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttacgaagagcagagtgactCggagtgcaagaatgggattc	14	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1824845	A	A	1824845	4	1	9	1	0	0	0	0	0	1	0	0	896	893	31	3	814	3	ARHGEF10	8	1824845	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1182352	1824845	144539177	9241	17392											
ARHGEF10	9639	broad.mit.edu	37	chr8	1857477	1857477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcccctctcatgacagcCgtgtgatgagcagccagagg	12	13	2	4	rs149060376		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1857477	A	A	1857477	3	1	9	1	0	0	0	0	1	0	0	0	896	652	23	1	2050	1	ARHGEF10	8	1857477	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32632	1857477	144506545	9242	17393											
ARHGEF10	9639	broad.mit.edu	37	chr8	1871655	1871655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttaaaccagtcagtagccCatgactggacatcaggttta	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1871655	A	A	1871655	3	1	9	1	0	0	0	0	1	0	0	0	896	594	21	2	2355	2	ARHGEF10	8	1871655	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14178	1871655	144492367	9243	17394											
MYOM2	9172	broad.mit.edu	37	chr8	2005406	2005406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgccctttccggccttcGggggccacgtggttttcttc	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2005406	T	T	2005406	1	4	9	0	1	0	0	0	0	0	0	0	10186	1131	39	1		1	MYOM2	8	2005406	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	133751	2005406	144358616	9244	17395											
MYOM2	9172	broad.mit.edu	37	chr8	2027593	2027594	+	Intron	DNP	GG	TT	TT													atgagggaaaacgggcttttGgggaaaacttcgcatgtcaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2027594	TT	TT	2027593	1	4	9	0	1	0	0	0	0	0	0	0	10186	1363	47	2		2	MYOM2	8	2027593	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	22187	2027593	144336429	9245	17396											
MYOM2	9172	broad.mit.edu	37	chr8	2027636	2027636	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagtgtcaacctttctctcCgcagccgttcatttggaggg	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2027636	A	A	2027636	1	1	9	0	1	0	0	0	0	0	0	0	10186	667	23	1		1	MYOM2	8	2027636	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	2027636	144336386	9246	17397											
MYOM2	9172	broad.mit.edu	37	chr8	2027651	2027651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccgcagccgttcatttGgagggagagaaggagattgc	14	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2027651	T	T	2027651	3	4	9	1	0	0	0	0	1	0	0	0	10186	1339	47	2	1519	2	MYOM2	8	2027651	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	2027651	144336371	9247	17398											
MYOM2	9172	broad.mit.edu	37	chr8	2040209	2040209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtcgggttcttgcttccCgaaacaccaagacgtcggtg	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2040209	A	A	2040209	2	1	9	1	0	0	0	0	0	0	0	1	10186	644	23	1		1	MYOM2	8	2040209	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12558	2040209	144323813	9248	17399											
MYOM2	9172	broad.mit.edu	37	chr8	2064088	2064088	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgagtttcctcactctgAccggctcccctgcccctagc	9	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2064088	T	T	2064088	1	4	9	0	1	0	0	0	0	0	0	0	10186	290	10	5		5	MYOM2	8	2064088	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	23879	2064088	144299934	9249	17400											
MYOM2	9172	broad.mit.edu	37	chr8	2092629	2092629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttggaaaccctgacccCgaagtgatttggttcaagaa	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2092629	A	A	2092629	2	1	9	1	0	0	0	0	0	0	0	1	10186	639	23	1		1	MYOM2	8	2092629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28541	2092629	144271393	9250	17401											
MYOM2	9172	broad.mit.edu	37	chr8	2092878	2092878	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaagcccaagctcatcccCgcgtctgcctcagcggcagg	11	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2092878	A	A	2092878	2	1	9	1	0	0	0	0	0	0	0	1	10186	639	23	1		1	MYOM2	8	2092878	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	249	2092878	144271144	9251	17402											
CSMD1	64478	broad.mit.edu	37	chr8	2857618	2857618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatctccactaatgtgacCgttcacaatcgggtctgggg	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2857618	A	A	2857618	3	1	9	1	0	0	0	0	1	0	0	0	3978	652	23	1	2701	1	CSMD1	8	2857618	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	764740	2857618	143506404	9252	17403											
CSMD1	64478	broad.mit.edu	37	chr8	2965202	2965202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggtgtaaaaaaatgtcGtgctgaattcatggtattgt	12	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2965202	T	T	2965202	1	4	9	0	1	0	0	0	0	0	0	0	3978	1160	40	3		3	CSMD1	8	2965202	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	107584	2965202	143398820	9253	17404											
CSMD1	64478	broad.mit.edu	37	chr8	3165290	3165290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatacggagctggatagcCaggggacaatattcgtcctg	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3165290	A	A	3165290	3	1	9	1	0	0	0	0	1	0	0	0	3978	594	21	2	7001	2	CSMD1	8	3165290	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	200088	3165290	143198732	9254	17405											
CSMD1	64478	broad.mit.edu	37	chr8	4495015	4495015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggcatagttcggataccCgtgaggaaaccctgggctct	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4495015	A	A	4495015	3	1	9	1	0	0	0	0	1	0	0	0	3978	652	23	1	10632	1	CSMD1	8	4495015	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1329725	4495015	141869007	9255	17406											
MCPH1	79648	broad.mit.edu	37	chr8	6289060	6289060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgatgaatcattgttcCctgcagctaatatgaatgaa	7	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6289060	A	A	6289060	3	1	9	1	0	0	0	0	1	0	0	0	9491	623	22	2	288	2	MCPH1	8	6289060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1794045	6289060	140074962	9256	17407											
ANGPT2	285	broad.mit.edu	37	chr8	6420228	6420228	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacttgcagcctctgcacCgagtcatcgtattcgagcgg	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6420228	A	A	6420228	2	1	9	1	0	0	0	0	0	0	0	1	611	639	23	1		1	ANGPT2	8	6420228	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	131168	6420228	139943794	9257	17408											
DEFB105A	245908	broad.mit.edu	37	chr8	7680946	7680946	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaagtcctgcctggcaccCtaaattcaaaacaaaataca	4	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7680946	A	A	7680946	5	1	9	1	0	0	0	0	0	0	1	0	4432	695	24	2	421	2	DEFB105A	8	7680946	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	1260718	7680946	138683076	9258	17409											
DEFB106A	245909	broad.mit.edu	37	chr8	7686270	7686270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtcatacaactgtatctGgtaaacatacatgtctgaaa	7	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7686270	T	T	7686270	1	4	9	0	1	0	0	0	0	0	0	0	4434	1363	47	2		2	DEFB106A	8	7686270	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5324	7686270	138677752	9259	17410											
SPAG11A	653423	broad.mit.edu	37	chr8	7721059	7721059	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagacaacgctgtggataagGagagtagagacttcctcttc	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7721059	T	T	7721059	1	4	9	0	1	0	0	0	0	0	0	0	15092	1189	41	3		3	SPAG11A	8	7721059	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	34789	7721059	138642963	9260	17411											
SGK223	157285	broad.mit.edu	37	chr8	8176497	8176497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcaggtgctccagccCgttgcagagttgcagaagca	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8176497	A	A	8176497	3	1	9	1	0	0	0	0	1	0	0	0	14323	652	23	1	824	1	SGK223	8	8176497	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	455438	8176497	138187525	9261	17412											
SGK223	157285	broad.mit.edu	37	chr8	8185693	8185693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaggatggtggcggttccCggggctcaacgaatagctaa	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8185693	A	A	8185693	3	1	9	1	0	0	0	0	1	0	0	0	14323	652	23	1	1617	1	SGK223	8	8185693	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9196	8185693	138178329	9262	17413											
MFHAS1	9258	broad.mit.edu	37	chr8	8749164	8749164	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgatgaaccgcaggccccGggaggcatcggccgtccagc	14	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8749164	T	T	8749164	2	4	9	1	0	0	0	0	0	0	0	1	9614	1115	39	1		1	MFHAS1	8	8749164	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	563471	8749164	137614858	9263	17414											
ERI1	90459	broad.mit.edu	37	chr8	8865562	8865562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgagtgacttcagtgaccCggtttacaaagagattgcca	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8865562	A	A	8865562	3	1	9	1	0	0	0	0	1	0	0	0	5269	652	23	1	197	1	ERI1	8	8865562	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116398	8865562	137498460	9264	17415											
ERI1	90459	broad.mit.edu	37	chr8	8873825	8873825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaacttgctatccttccCttgcaggaagacacgtttca	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8873825	A	A	8873825	1	1	9	0	1	0	0	0	0	0	0	0	5269	696	24	2		2	ERI1	8	8873825	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8263	8873825	137490197	9265	17416											
ERI1	90459	broad.mit.edu	37	chr8	8887404	8887404	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgactctaagaatatcgccCgaatagcagttcgaatgctt	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8887404	A	A	8887404	2	1	9	1	0	0	0	0	0	0	0	1	5269	644	23	1		1	ERI1	8	8887404	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13579	8887404	137476618	9266	17417											
TNKS	8658	broad.mit.edu	37	chr8	9588484	9588484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcgcagcaggctacaacCgcgtgtctgttgtagagtac	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9588484	A	A	9588484	3	1	9	1	0	0	0	0	1	0	0	0	16442	652	23	1	2140	1	TNKS	8	9588484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	701080	9588484	136775538	9267	17418											
MSRA	4482	broad.mit.edu	37	chr8	10159140	10159140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgggagaatcacgaccCgacccaaggtagagtgatga	12	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10159140	A	A	10159140	3	1	9	1	0	0	0	0	1	0	0	0	9981	652	23	1	459	1	MSRA	8	10159140	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	570656	10159140	136204882	9268	17419											
PRSS55	203074	broad.mit.edu	37	chr8	10387053	10387053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttcgagggaagaactcGgtattccagaatcacagggg	12	7	1	2	rs142659616		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10387053	T	T	10387053	3	4	9	1	0	0	0	0	1	0	0	0	12740	1116	39	1	197	1	PRSS55	8	10387053	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	227913	10387053	135976969	9269	17420											
PRSS55	203074	broad.mit.edu	37	chr8	10387198	10387198	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctcactgcttatattcCgaggagctgttgtaagtacc	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10387198	A	A	10387198	2	1	9	1	0	0	0	0	0	0	0	1	12740	639	23	1		1	PRSS55	8	10387198	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	145	10387198	135976824	9270	17421											
RP1L1	94137	broad.mit.edu	37	chr8	10467279	10467279	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcctctgtgccctctgcGgggcacggctctgcagaggc	15	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467279	T	T	10467279	2	4	9	1	0	0	0	0	0	0	0	1	13644	1103	39	1		1	RP1L1	8	10467279	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	80081	10467279	135896743	9271	17422											
RP1L1	94137	broad.mit.edu	37	chr8	10467361	10467361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggagcctttcccatccGgagagctggcctctgacaat	11	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467361	T	T	10467361	3	4	9	1	0	0	0	0	1	0	0	0	13644	1116	39	1	2959	1	RP1L1	8	10467361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82	10467361	135896661	9272	17423											
RP1L1	94137	broad.mit.edu	37	chr8	10468262	10468262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaagtaatgagggcccCggctgagcagctgagcctcc	13	13	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10468262	A	A	10468262	3	1	9	1	0	0	0	0	1	0	0	0	13644	652	23	1	3860	1	RP1L1	8	10468262	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	901	10468262	135895760	9273	17424											
RP1L1	94137	broad.mit.edu	37	chr8	10480092	10480092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaggaaccgtcagacccCaacagcctacctttttcccg	6	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10480092	A	A	10480092	1	1	9	0	1	0	0	0	0	0	0	0	13644	609	21	2		2	RP1L1	8	10480092	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11830	10480092	135883930	9274	17425											
AMAC1L2	83650	broad.mit.edu	37	chr8	11188804	11188804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctcgtatggcttaccaGggttccaacctgccctcgct	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11188804	T	T	11188804	3	4	9	1	0	0	0	0	1	0	0	0	560	991	35	2	191	2	AMAC1L2	8	11188804	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	708712	11188804	135175218	9275	17426											
AMAC1L2	83650	broad.mit.edu	37	chr8	11189347	11189347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgtgctgcagaccccCgtgttgcccagtgacctcct	9	16	1	2	rs141311356		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11189347	A	A	11189347	2	1	9	1	0	0	0	0	0	0	0	1	560	639	23	1		1	AMAC1L2	8	11189347	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	543	11189347	135174675	9276	17427											
BLK	640	broad.mit.edu	37	chr8	11407686	11407686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggttctttagatcacaGggtcggaaggaggctgagag	17	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11407686	T	T	11407686	3	4	9	1	0	0	0	0	1	0	0	0	1450	991	35	2	405	2	BLK	8	11407686	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	218339	11407686	134956336	9277	17428											
GATA4	2626	broad.mit.edu	37	chr8	11614583	11614583	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactacgggcacagcagctcCgtgtcccaggtacgcgccat	11	16	0	0	rs34393445	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11614583	A	A	11614583	2	1	9	1	0	0	0	0	0	0	0	1	6318	639	23	1		1	GATA4	8	11614583	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	206897	11614583	134749439	9278	17429											
GATA4	2626	broad.mit.edu	37	chr8	11615894	11615894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaaggctatgcgtctccCgtcagccagtctccacagac	8	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11615894	A	A	11615894	2	1	9	1	0	0	0	0	0	0	0	1	6318	639	23	1		1	GATA4	8	11615894	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1311	11615894	134748128	9279	17430											
NEIL2	252969	broad.mit.edu	37	chr8	11643410	11643410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgccttgttaactttgtGggtggtttcatcatgccatg	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11643410	T	T	11643410	1	4	9	0	1	0	0	0	0	0	0	0	10414	1363	47	2		2	NEIL2	8	11643410	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27516	11643410	134720612	9280	17431											
NEIL2	252969	broad.mit.edu	37	chr8	11643527	11643527	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggatccatcccctttctctCggttcagtcctgagtgcctc	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11643527	A	A	11643527	2	1	9	1	0	0	0	0	0	0	0	1	10414	871	31	3		3	NEIL2	8	11643527	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	11643527	134720495	9281	17432											
USP17L2	377630	broad.mit.edu	37	chr8	11996128	11996128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatcacagaggtcgacacGggcctcagatgagagtggtg	14	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11996128	T	T	11996128	3	4	9	1	0	0	0	0	1	0	0	0	17174	1116	39	1	1454	1	USP17L2	8	11996128	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	352601	11996128	134367894	9282	17433											
LONRF1	91694	broad.mit.edu	37	chr8	12598424	12598424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcaaaatcttcatcaaGggctaagcactgaagaaaga	10	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12598424	T	T	12598424	3	4	9	1	0	0	0	0	1	0	0	0	8981	1000	35	2	1439	2	LONRF1	8	12598424	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	602296	12598424	133765598	9283	17434											
DLC1	10395	broad.mit.edu	37	chr8	12952305	12952305	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtttccgagagtttgttCgtcattagtggctcaggaag	13	6	2	1	rs35279447	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12952305	A	A	12952305	2	1	9	1	0	0	0	0	0	0	0	1	4590	871	31	3		3	DLC1	8	12952305	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	353881	12952305	133411717	9284	17435											
DLC1	10395	broad.mit.edu	37	chr8	13072103	13072103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctgcccgaggaaattGgagtgcagtgttctgccagg	16	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13072103	T	T	13072103	1	4	9	0	1	0	0	0	0	0	0	0	4590	1363	47	2		2	DLC1	8	13072103	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	119798	13072103	133291919	9285	17436											
DLC1	10395	broad.mit.edu	37	chr8	13357358	13357358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgacccattggcctccCaggaaaatctctcagctctg	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13357358	A	A	13357358	3	1	9	1	0	0	0	0	1	0	0	0	4590	594	21	2	4516	2	DLC1	8	13357358	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	285255	13357358	133006664	9286	17437											
TUSC3	7991	broad.mit.edu	37	chr8	15508191	15508191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgtttctactatggccCattattcttatcaggcaagc	8	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15508191	A	A	15508191	1	1	9	0	1	0	0	0	0	0	0	0	16904	609	21	2		2	TUSC3	8	15508191	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2150833	15508191	130855831	9287	17438											
TUSC3	7991	broad.mit.edu	37	chr8	15605951	15605951	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactttcaatatttcgttcCaagtaccacggctatcctta	4	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15605951	A	A	15605951	2	1	9	1	0	0	0	0	0	0	0	1	16904	581	21	2		2	TUSC3	8	15605951	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	97760	15605951	130758071	9288	17439											
MSR1	4481	broad.mit.edu	37	chr8	16007796	16007796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaaagccaattgctcccCgatcacctttaagacccgga	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16007796	A	A	16007796	3	1	9	1	0	0	0	0	1	0	0	0	9980	652	23	1	496	1	MSR1	8	16007796	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	401845	16007796	130356226	9289	17440											
EFHA2	286097	broad.mit.edu	37	chr8	16948003	16948003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttcttttgctgtacttGggttcattctgaaatatgac	7	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16948003	T	T	16948003	1	4	9	0	1	0	0	0	0	0	0	0	4984	1363	47	2		2	EFHA2	8	16948003	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	940207	16948003	129416019	9290	17441											
EFHA2	286097	broad.mit.edu	37	chr8	16956010	16956010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtctccagaagctattGggatacactgagacgtaaca	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16956010	T	T	16956010	3	4	9	1	0	0	0	0	1	0	0	0	4984	1357	47	2	966	2	EFHA2	8	16956010	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8007	16956010	129408012	9291	17442											
CNOT7	29883	broad.mit.edu	37	chr8	17090006	17090006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgttgtggtcctatcCgttccagctctaactgttct	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17090006	A	A	17090006	3	1	9	1	0	0	0	0	1	0	0	0	3656	652	23	1	212	1	CNOT7	8	17090006	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133996	17090006	129274016	9292	17443											
CNOT7	29883	broad.mit.edu	37	chr8	17102568	17102568	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaacgtaattatattttcGgataacttgacgaattttct	6	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17102568	T	T	17102568	2	4	9	1	0	0	0	0	0	0	0	1	3656	1124	39	1		1	CNOT7	8	17102568	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12562	17102568	129261454	9293	17444											
VPS37A	137492	broad.mit.edu	37	chr8	17132452	17132452	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattacccattcccacagtGgatgcttcaataccggttgg	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17132452	T	T	17132452	2	4	9	1	0	0	0	0	0	0	0	1	17332	1335	47	2		2	VPS37A	8	17132452	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29884	17132452	129231570	9294	17445											
MTMR7	9108	broad.mit.edu	37	chr8	17157580	17157580	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcgccttgtgaagggctccGggatggaaatgatttcatat	12	7	1	2	rs140365611		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17157580	C	C	17157580	3	2	9	1	0	0	0	0	1	0	0	0	10042	1115	39	4	212	4	MTMR7	8	17157580	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25128	17157580	129206442	9295	17446											
MTMR7	9108	broad.mit.edu	37	chr8	17169072	17169072	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcagcaggcttgccaccGagcacacctgagcggtcctg	12	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17169072	T	T	17169072	4	4	9	1	0	0	0	0	0	1	0	0	10042	1059	37	3	957	3	MTMR7	8	17169072	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11492	17169072	129194950	9296	17447											
MTMR7	9108	broad.mit.edu	37	chr8	17188710	17188710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatggatgttctctatccCgataaactgaaacttgatat	7	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17188710	A	A	17188710	3	1	9	1	0	0	0	0	1	0	0	0	10042	652	23	1	1200	1	MTMR7	8	17188710	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19638	17188710	129175312	9297	17448											
SLC7A2	6542	broad.mit.edu	37	chr8	17406220	17406220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtaaaagagtctgcttGggtgaataaagtcttcacag	12	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17406220	T	T	17406220	3	4	9	1	0	0	0	0	1	0	0	0	14811	1357	47	2	700	2	SLC7A2	8	17406220	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	217510	17406220	128957802	9298	17449											
SLC7A2	6542	broad.mit.edu	37	chr8	17406254	17406254	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacagctgttaatattctCgtccttctgtttgtgatggt	8	8	3	1	rs151110836		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17406254	A	A	17406254	2	1	9	1	0	0	0	0	0	0	0	1	14811	871	31	3		3	SLC7A2	8	17406254	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	17406254	128957768	9299	17450											
SLC7A2	6542	broad.mit.edu	37	chr8	17409384	17409384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttaacacttatgatgcCgtactacctcctcgatgaaa	6	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17409384	A	A	17409384	3	1	9	1	0	0	0	0	1	0	0	0	14811	652	23	1	1086	1	SLC7A2	8	17409384	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3130	17409384	128954638	9300	17451											
PDGFRL	5157	broad.mit.edu	37	chr8	17447161	17447161	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtcgcttccagaaaccCgccgctaccctgagtctgct	9	15	1	2	rs138770134	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17447161	A	A	17447161	2	1	9	1	0	0	0	0	0	0	0	1	11757	639	23	1		1	PDGFRL	8	17447161	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37777	17447161	128916861	9301	17452											
MTUS1	57509	broad.mit.edu	37	chr8	17611879	17611879	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttttgattgttgattttcCtaaactgggtttacacaggt	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17611879	A	A	17611879	4	1	9	1	0	0	0	0	0	1	0	0	10059	690	24	2	2749	2	MTUS1	8	17611879	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	164718	17611879	128752143	9302	17453											
MTUS1	57509	broad.mit.edu	37	chr8	17612411	17612411	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtaatgcagaatcattGgggacttccatgccatcaga	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17612411	T	T	17612411	2	4	9	1	0	0	0	0	0	0	0	1	10059	1335	47	2		2	MTUS1	8	17612411	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	532	17612411	128751611	9303	17454											
PCM1	5108	broad.mit.edu	37	chr8	17869344	17869344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgatgaacaggtattccCgtattgactgacacacttcc	7	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17869344	A	A	17869344	1	1	9	0	1	0	0	0	0	0	0	0	11678	667	23	1		1	PCM1	8	17869344	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	256933	17869344	128494678	9304	17455											
ASAH1	427	broad.mit.edu	37	chr8	17919736	17919736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttcaacttttacataacGgtaacaggacagaaggctac	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17919736	T	T	17919736	1	4	9	0	1	0	0	0	0	0	0	0	1010	1131	39	1		1	ASAH1	8	17919736	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	50392	17919736	128444286	9305	17456											
ASAH1	427	broad.mit.edu	37	chr8	17919789	17919789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacaacagactccttactGgtttgaatcctgttaacatg	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17919789	T	T	17919789	3	4	9	1	0	0	0	0	1	0	0	0	1010	1362	47	2	568	2	ASAH1	8	17919789	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	17919789	128444233	9306	17457											
ASAH1	427	broad.mit.edu	37	chr8	17920725	17920725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaaatccatgtttctccCatgtattagatgacctattt	4	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17920725	A	A	17920725	3	1	9	1	0	0	0	0	1	0	0	0	1010	594	21	2	747	2	ASAH1	8	17920725	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	936	17920725	128443297	9307	17458											
PSD3	23362	broad.mit.edu	37	chr8	18393302	18393302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaggtcggtgatccttcCtctctgacacgttacgcttg	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18393302	A	A	18393302	3	1	9	1	0	0	0	0	1	0	0	0	12754	681	24	2	52	2	PSD3	8	18393302	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	472577	18393302	127970720	9308	17459											
PSD3	23362	broad.mit.edu	37	chr8	18541402	18541402	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggaacctgaggtcctcaccCgtaccttgctggcactctgg	11	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18541402	G	G	18541402	1	3	9	0	1	0	0	0	0	0	0	0	12754	667	23	4		4	PSD3	8	18541402	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	148100	18541402	127822620	9309	17460											
PSD3	23362	broad.mit.edu	37	chr8	18729490	18729490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattccacatgtttgaccCggcctgggcgtcccatggag	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18729490	A	A	18729490	3	1	9	1	0	0	0	0	1	0	0	0	12754	652	23	1	2351	1	PSD3	8	18729490	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	188088	18729490	127634532	9310	17461											
PSD3	23362	broad.mit.edu	37	chr8	18793562	18793562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagtatctggagctttccCttcagatctgccaaataaaa	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18793562	A	A	18793562	3	1	9	1	0	0	0	0	1	0	0	0	12754	681	24	2	3127	2	PSD3	8	18793562	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64072	18793562	127570460	9311	17462											
SH2D4A	63898	broad.mit.edu	37	chr8	19190551	19190551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaccatctagataaaccCtatgatgtgctctgtaatga	7	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19190551	A	A	19190551	2	1	9	1	0	0	0	0	0	0	0	1	14348	668	24	2		2	SH2D4A	8	19190551	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	396989	19190551	127173471	9312	17463											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19277950	19277950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcttcccttccagaagcGggctccaacatcaagtccct	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19277950	T	T	19277950	3	4	9	1	0	0	0	0	1	0	0	0	3972	1116	39	1	581	1	CSGALNACT1	8	19277950	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87399	19277950	127086072	9313	17464											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19316075	19316075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtcgaaataagatgagcCgtttgaattcgtgtttgtgg	13	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19316075	A	A	19316075	3	1	9	1	0	0	0	0	1	0	0	0	3972	652	23	1	909	1	CSGALNACT1	8	19316075	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38125	19316075	127047947	9314	17465											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19316145	19316145	+	Silent	SNP	G	T	T													ccctttgtccctttctgttcGgtagatccctgttaagagaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19316145	T	T	19316145	2	4	9	1	0	0	0	0	0	0	0	1	3972	1124	39	1		1	CSGALNACT1	8	19316145	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	19316145	127047877	9315	17466	113	2									
CSGALNACT1	55790	broad.mit.edu	37	chr8	19316153	19316153	+	Missense_Mutation	SNP	C	A	A													ccctttctgttcggtagatcCctgttaagagaaaaacaagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19316153	A	A	19316153	3	1	9	1	0	0	0	0	1	0	0	0	3972	637	22	2	987	2	CSGALNACT1	8	19316153	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	19316153	127047869	9316	17467	113	2									
CSGALNACT1	55790	broad.mit.edu	37	chr8	19363306	19363306	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagcaaaaccaccacccGggaaatccacgcaagcagcc	7	18	0	0	rs117494579	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19363306	T	T	19363306	2	4	9	1	0	0	0	0	0	0	0	1	3972	1115	39	1		1	CSGALNACT1	8	19363306	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47153	19363306	127000716	9317	17468											
INTS10	55174	broad.mit.edu	37	chr8	19683949	19683949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttaggtcctaatgcccCgagccaagttccactggttc	9	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19683949	A	A	19683949	3	1	9	1	0	0	0	0	1	0	0	0	7846	652	23	1	1053	1	INTS10	8	19683949	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	320643	19683949	126680073	9318	17469											
LPL	4023	broad.mit.edu	37	chr8	19809439	19809439	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgggacaggatgtggccCggtttatcaactggatggag	17	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19809439	A	A	19809439	2	1	9	1	0	0	0	0	0	0	0	1	9008	643	23	1		1	LPL	8	19809439	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	125490	19809439	126554583	9319	17470											
XPO7	23039	broad.mit.edu	37	chr8	21827749	21827749	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgccagaatcacaaaactGggctggtttgactgtcagaa	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21827749	T	T	21827749	2	4	9	1	0	0	0	0	0	0	0	1	17576	1335	47	2		2	XPO7	8	21827749	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2018310	21827749	124536273	9320	17471											
XPO7	23039	broad.mit.edu	37	chr8	21843259	21843259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggcacttctccactcccCgatagggtcctctccactta	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21843259	A	A	21843259	1	1	9	0	1	0	0	0	0	0	0	0	17576	667	23	1		1	XPO7	8	21843259	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15510	21843259	124520763	9321	17472											
NPM2	10361	broad.mit.edu	37	chr8	21891542	21891542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtgcttggagcaacacGgatcacagaatgggaggtgg	17	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21891542	T	T	21891542	1	4	9	0	1	0	0	0	0	0	0	0	10683	1131	39	1		1	NPM2	8	21891542	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	48283	21891542	124472480	9322	17473											
EPB49	2039	broad.mit.edu	37	chr8	21931313	21931313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgatccgaaggaaaaccCgctctctgcctgaccggaca	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21931313	A	A	21931313	3	1	9	1	0	0	0	0	1	0	0	0	5201	652	23	1	836	1	EPB49	8	21931313	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39771	21931313	124432709	9323	17474											
REEP4	80346	broad.mit.edu	37	chr8	21996199	21996199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgcaggctctggctgcGgattaggggcttctctcggg	15	12	2	0	rs117450750	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21996199	T	T	21996199	3	4	9	1	0	0	0	0	1	0	0	0	13315	1116	39	1	120	1	REEP4	8	21996199	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64886	21996199	124367823	9324	17475											
BMP1	649	broad.mit.edu	37	chr8	22033742	22033742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagatggagaggtagatccCgtagccggcgggcggcgacg	20	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22033742	A	A	22033742	3	1	9	1	0	0	0	0	1	0	0	0	1462	652	23	1	359	1	BMP1	8	22033742	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37543	22033742	124330280	9325	17476											
BMP1	649	broad.mit.edu	37	chr8	22052390	22052390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcaagttcgtctctgacGggtccattaacaaagcgggc	12	11	2	1	rs146615409		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22052390	T	T	22052390	3	4	9	1	0	0	0	0	1	0	0	0	1462	1116	39	1	1643	1	BMP1	8	22052390	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18648	22052390	124311632	9326	17477											
BMP1	649	broad.mit.edu	37	chr8	22058658	22058658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagctctgcagccccctcGgggacgcccccaccagctca	10	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22058658	T	T	22058658	1	4	9	0	1	0	0	0	0	0	0	0	1462	1116	39	1		1	BMP1	8	22058658	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6268	22058658	124305364	9327	17478											
BMP1	649	broad.mit.edu	37	chr8	22058768	22058768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaacctcaccttggacGgaatgggatgggggcttcgg	16	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22058768	T	T	22058768	1	4	9	0	1	0	0	0	0	0	0	0	1462	1131	39	1		1	BMP1	8	22058768	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	110	22058768	124305254	9328	17479											
PIWIL2	55124	broad.mit.edu	37	chr8	22141720	22141720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaacacctcagtctttGggactgaacctcgtcaaaat	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22141720	T	T	22141720	3	4	9	1	0	0	0	0	1	0	0	0	12053	1339	47	2	696	2	PIWIL2	8	22141720	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82952	22141720	124222302	9329	17480											
PIWIL2	55124	broad.mit.edu	37	chr8	22168656	22168656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgggcacttttttaccCaaagagagcaatggaccagg	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22168656	A	A	22168656	3	1	9	1	0	0	0	0	1	0	0	0	12053	594	21	2	1890	2	PIWIL2	8	22168656	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26936	22168656	124195366	9330	17481											
SLC39A14	23516	broad.mit.edu	37	chr8	22265786	22265786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggcaaggcctgacctttGgggtctaagcggcttcctgc	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22265786	T	T	22265786	1	4	9	0	1	0	0	0	0	0	0	0	14731	1363	47	2		2	SLC39A14	8	22265786	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	97130	22265786	124098236	9331	17482											
PDLIM2	64236	broad.mit.edu	37	chr8	22452033	22452033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctttttgtaaagatgccCgttttacaggaggacgcttg	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22452033	A	A	22452033	1	1	9	0	1	0	0	0	0	0	0	0	11774	667	23	1		1	PDLIM2	8	22452033	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	186247	22452033	123911989	9332	17483											
C8orf58	541565	broad.mit.edu	37	chr8	22460189	22460189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcccaggttagggcacGgagaggagactgataagcca	14	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22460189	T	T	22460189	1	4	9	0	1	0	0	0	0	0	0	0	2459	1131	39	1		1	C8orf58	8	22460189	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8156	22460189	123903833	9333	17484											
KIAA1967	57805	broad.mit.edu	37	chr8	22475163	22475163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttcatttttgtactgtGgagttgggtgggccctgctc	14	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22475163	T	T	22475163	1	4	9	0	1	0	0	0	0	0	0	0	8335	1363	47	2		2	KIAA1967	8	22475163	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14974	22475163	123888859	9334	17485											
BIN3	55909	broad.mit.edu	37	chr8	22487991	22487991	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatccatccgcttcatggcCgtgtccagggccgtcaccat	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22487991	A	A	22487991	2	1	9	1	0	0	0	0	0	0	0	1	1440	639	23	1		1	BIN3	8	22487991	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12828	22487991	123876031	9335	17486											
RHOBTB2	23221	broad.mit.edu	37	chr8	22863401	22863401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgtacagggctggggtGgggcagatgttccaggacca	18	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22863401	T	T	22863401	1	4	9	0	1	0	0	0	0	0	0	0	13443	1363	47	2		2	RHOBTB2	8	22863401	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	375410	22863401	123500621	9336	17487											
RHOBTB2	23221	broad.mit.edu	37	chr8	22863541	22863541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccatgtcaagaccatgtGgtacccagaaatcaagcact	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22863541	T	T	22863541	3	4	9	1	0	0	0	0	1	0	0	0	13443	1357	47	2	460	2	RHOBTB2	8	22863541	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	140	22863541	123500481	9337	17488											
RHOBTB2	23221	broad.mit.edu	37	chr8	22868232	22868232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcactcggggacctcccCgcggcagaggccagggaaac	15	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22868232	A	A	22868232	1	1	9	0	1	0	0	0	0	0	0	0	13443	667	23	1		1	RHOBTB2	8	22868232	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4691	22868232	123495790	9338	17489											
TNFRSF10D	8793	broad.mit.edu	37	chr8	23003290	23003290	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgataaggtagtgataGggagaggcaagcatccccag	14	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23003290	T	T	23003290	2	4	9	1	0	0	0	0	0	0	0	1	16406	987	35	2		2	TNFRSF10D	8	23003290	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	135058	23003290	123360732	9339	17490											
LOXL2	4017	broad.mit.edu	37	chr8	23198566	23198566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacatgccgcagaccacgcGggaattcttggccgtccagt	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23198566	T	T	23198566	3	4	9	1	0	0	0	0	1	0	0	0	8987	1116	39	1	1686	1	LOXL2	8	23198566	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	195276	23198566	123165456	9340	17491											
ENTPD4	9583	broad.mit.edu	37	chr8	23294507	23294507	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccattcgtaacacatcctcGgtgcagtagtagaattcgga	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23294507	T	T	23294507	2	4	9	1	0	0	0	0	0	0	0	1	5183	1103	39	1		1	ENTPD4	8	23294507	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	95941	23294507	123069515	9341	17492											
ENTPD4	9583	broad.mit.edu	37	chr8	23301974	23301974	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtggaggatcacctttcGgggaggattctcattccagc	12	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23301974	T	T	23301974	2	4	9	1	0	0	0	0	0	0	0	1	5183	1103	39	1		1	ENTPD4	8	23301974	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7467	23301974	123062048	9342	17493											
NKX3-1	4824	broad.mit.edu	37	chr8	23538820	23538820	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggagaccagggaggcccGggagaaggcctcctctttca	14	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23538820	T	T	23538820	2	4	9	1	0	0	0	0	0	0	0	1	10550	1115	39	1		1	NKX3-1	8	23538820	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	236846	23538820	122825202	9343	17494											
ADAM28	10863	broad.mit.edu	37	chr8	24171025	24171025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattatgacagcacctgtGggatggatggtgtgttgtgg	16	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24171025	T	T	24171025	3	4	9	1	0	0	0	0	1	0	0	0	246	1348	47	2	530	2	ADAM28	8	24171025	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	632205	24171025	122192997	9344	17495											
ADAM28	10863	broad.mit.edu	37	chr8	24188548	24188548	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatctggcagttggtcagtgGattggattttgtcttttggg	15	4	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24188548	C	C	24188548	1	2	9	0	1	0	0	0	0	0	0	0	246	1189	41	4		4	ADAM28	8	24188548	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17523	24188548	122175474	9345	17496											
ADAM28	10863	broad.mit.edu	37	chr8	24199145	24199145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagttgttctgtcaaggtGggtcggataatttgccctgg	15	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24199145	T	T	24199145	3	4	9	1	0	0	0	0	1	0	0	0	246	1348	47	2	1823	2	ADAM28	8	24199145	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10597	24199145	122164877	9346	17497											
ADAM28	10863	broad.mit.edu	37	chr8	24199173	24199173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttgccctggaaaggacGgatagtgactttcctgacat	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24199173	T	T	24199173	3	4	9	1	0	0	0	0	1	0	0	0	246	1116	39	1	1851	1	ADAM28	8	24199173	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	24199173	122164849	9347	17498											
ADAM7	8756	broad.mit.edu	37	chr8	24298631	24298631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcactcagaatgcttcccGggtgtatattcttgatgatt	8	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24298631	T	T	24298631	3	4	9	1	0	0	0	0	1	0	0	0	251	1116	39	1	12	1	ADAM7	8	24298631	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99458	24298631	122065391	9348	17499											
ADAM7	8756	broad.mit.edu	37	chr8	24300072	24300072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgagatactggacacaccCatgatgatgacatactggta	10	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24300072	A	A	24300072	3	1	9	1	0	0	0	0	1	0	0	0	251	594	21	2	145	2	ADAM7	8	24300072	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1441	24300072	122063950	9349	17500											
ADAM7	8756	broad.mit.edu	37	chr8	24304607	24304607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggactgctgggtggattGgagatagggaacattcaccc	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24304607	T	T	24304607	1	4	9	0	1	0	0	0	0	0	0	0	251	1363	47	2		2	ADAM7	8	24304607	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4535	24304607	122059415	9350	17501											
ADAM7	8756	broad.mit.edu	37	chr8	24321434	24321434	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagtgaaacattctactcCatgaaaggagaagcgttcac	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24321434	A	A	24321434	2	1	9	1	0	0	0	0	0	0	0	1	251	581	21	2		2	ADAM7	8	24321434	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16827	24321434	122042588	9351	17502											
ADAM7	8756	broad.mit.edu	37	chr8	24358344	24358344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgtcctggttattgtcGgtatcggagttcttatacta	10	7	1	0	rs112329833		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24358344	T	T	24358344	3	4	9	1	0	0	0	0	1	0	0	0	251	1116	39	1	2118	1	ADAM7	8	24358344	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36910	24358344	122005678	9352	17503											
DOCK5	80005	broad.mit.edu	37	chr8	25232044	25232044	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaaacctataaaactctcGagtgacaaaatgcttccttc	4	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25232044	T	T	25232044	1	4	9	0	1	0	0	0	0	0	0	0	4730	1073	37	3		3	DOCK5	8	25232044	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	873700	25232044	121131978	9353	17504											
KCTD9	54793	broad.mit.edu	37	chr8	25293810	25293810	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcggacaaattcctttcGggatattggtgaatgatcct	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25293810	T	T	25293810	2	4	9	1	0	0	0	0	0	0	0	1	8186	1124	39	1		1	KCTD9	8	25293810	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	61766	25293810	121070212	9354	17505											
CDCA2	157313	broad.mit.edu	37	chr8	25319758	25319758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagttctgtcgtgaattcCgttaatgaagcttttgtgct	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25319758	A	A	25319758	1	1	9	0	1	0	0	0	0	0	0	0	3116	667	23	1		1	CDCA2	8	25319758	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25948	25319758	121044264	9355	17506											
CDCA2	157313	broad.mit.edu	37	chr8	25360952	25360952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcagaaatctttatatGgggaaagagacattgcttct	10	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25360952	T	T	25360952	3	4	9	1	0	0	0	0	1	0	0	0	3116	1348	47	2	1785	2	CDCA2	8	25360952	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41194	25360952	121003070	9356	17507											
CDCA2	157313	broad.mit.edu	37	chr8	25365237	25365237	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaggattgaacataatGgagaaagaaagcagtaattg	12	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25365237	T	T	25365237	4	4	9	1	0	0	0	0	0	1	0	0	3116	1349	47	2	3109	2	CDCA2	8	25365237	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4285	25365237	120998785	9357	17508											
EBF2	64641	broad.mit.edu	37	chr8	25890616	25890616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacctgtcaattatgactGggtccgatggagtctcattt	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25890616	T	T	25890616	3	4	9	1	0	0	0	0	1	0	0	0	4921	1348	47	2	1235	2	EBF2	8	25890616	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	525379	25890616	120473406	9358	17509											
EBF2	64641	broad.mit.edu	37	chr8	25890679	25890679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcatcgactgtagattGggaaggaaccaagagtgaaa	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25890679	T	T	25890679	1	4	9	0	1	0	0	0	0	0	0	0	4921	1363	47	2		2	EBF2	8	25890679	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	25890679	120473343	9359	17510											
PPP2R2A	5520	broad.mit.edu	37	chr8	26218626	26218626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatctgcagatgatttgcGgattaatctttggcatctgg	10	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26218626	T	T	26218626	3	4	9	1	0	0	0	0	1	0	0	0	12485	1116	39	1	659	1	PPP2R2A	8	26218626	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	327947	26218626	120145396	9360	17511											
PNMA2	10687	broad.mit.edu	37	chr8	26365708	26365708	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactctttgactatctccgtGgcctgttccaaccagacctc	6	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26365708	T	T	26365708	2	4	9	1	0	0	0	0	0	0	0	1	12249	1335	47	2		2	PNMA2	8	26365708	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	147082	26365708	119998314	9361	17512											
ADRA1A	148	broad.mit.edu	37	chr8	26627854	26627854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatcctggcagatccacGgggcatggaagagaaaaatt	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26627854	T	T	26627854	3	4	9	1	0	0	0	0	1	0	0	0	334	1116	39	1	482	1	ADRA1A	8	26627854	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	262146	26627854	119736168	9362	17513											
ADRA1A	148	broad.mit.edu	37	chr8	26627894	26627894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccattcacaaacgccatcCgtcttggagatcctgtagaa	7	12	2	2	rs148618594	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26627894	A	A	26627894	2	1	9	1	0	0	0	0	0	0	0	1	334	639	23	1		1	ADRA1A	8	26627894	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	26627894	119736128	9363	17514											
ADRA1A	148	broad.mit.edu	37	chr8	26627999	26627999	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggtgcagggtgtagccCagggcatgtttggaagactg	19	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26627999	A	A	26627999	2	1	9	1	0	0	0	0	0	0	0	1	334	581	21	2		2	ADRA1A	8	26627999	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	26627999	119736023	9364	17515											
STMN4	81551	broad.mit.edu	37	chr8	27098709	27098709	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacttcaaaggattggccCgaggtgcatttgttcagctc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27098709	A	A	27098709	2	1	9	1	0	0	0	0	0	0	0	1	15429	639	23	1		1	STMN4	8	27098709	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	470710	27098709	119265313	9365	17516											
STMN4	81551	broad.mit.edu	37	chr8	27099266	27099266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcctacactgtctccCacaccagcctagacagaaaa	4	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27099266	A	A	27099266	1	1	9	0	1	0	0	0	0	0	0	0	15429	594	21	2		2	STMN4	8	27099266	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	557	27099266	119264756	9366	17517											
STMN4	81551	broad.mit.edu	37	chr8	27099304	27099304	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacaacctcaggtcatcCgagcatgcctgttccttggt	8	12	2	0	rs117787668	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27099304	A	A	27099304	1	1	9	0	1	0	0	0	0	0	0	0	15429	667	23	1		1	STMN4	8	27099304	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	27099304	119264718	9367	17518											
TRIM35	23087	broad.mit.edu	37	chr8	27147599	27147599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgttacctgcttgccccGgggccactggagtttgcacc	13	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27147599	T	T	27147599	1	4	9	0	1	0	0	0	0	0	0	0	16633	1131	39	1		1	TRIM35	8	27147599	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	48295	27147599	119216423	9368	17519											
PTK2B	2185	broad.mit.edu	37	chr8	27287517	27287517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgattcccacgtatggcaGgggaagggggcttctggtgg	18	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27287517	T	T	27287517	1	4	9	0	1	0	0	0	0	0	0	0	12869	1015	35	2		2	PTK2B	8	27287517	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	139918	27287517	119076505	9369	17520											
PTK2B	2185	broad.mit.edu	37	chr8	27287551	27287551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggcatgaggtgccctGggtctgactgcctcattctc	13	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27287551	T	T	27287551	1	4	9	0	1	0	0	0	0	0	0	0	12869	1363	47	2		2	PTK2B	8	27287551	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	27287551	119076471	9370	17521											
PTK2B	2185	broad.mit.edu	37	chr8	27287612	27287612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccacctatttctccaggcGgttcttcaaggatatgcccc	7	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27287612	T	T	27287612	3	4	9	1	0	0	0	0	1	0	0	0	12869	1116	39	1	572	1	PTK2B	8	27287612	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61	27287612	119076410	9371	17522											
PTK2B	2185	broad.mit.edu	37	chr8	27287682	27287682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcctagagtaagttctGggatcacccatctcccctcc	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27287682	T	T	27287682	1	4	9	0	1	0	0	0	0	0	0	0	12869	1363	47	2		2	PTK2B	8	27287682	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	27287682	119076340	9372	17523											
PTK2B	2185	broad.mit.edu	37	chr8	27287977	27287977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcttcgtgctgattccCgagactagagtgtaagggat	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27287977	A	A	27287977	1	1	9	0	1	0	0	0	0	0	0	0	12869	667	23	1		1	PTK2B	8	27287977	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	295	27287977	119076045	9373	17524											
PTK2B	2185	broad.mit.edu	37	chr8	27288519	27288519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcgaccaggagacctacCgctgtgaactcattgtaatg	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27288519	A	A	27288519	3	1	9	1	0	0	0	0	1	0	0	0	12869	652	23	1	822	1	PTK2B	8	27288519	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	542	27288519	119075503	9374	17525											
PTK2B	2185	broad.mit.edu	37	chr8	27288952	27288952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggacctggtcattggccCtaaagggatccgccagctga	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27288952	A	A	27288952	3	1	9	1	0	0	0	0	1	0	0	0	12869	681	24	2	878	2	PTK2B	8	27288952	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	433	27288952	119075070	9375	17526											
CLU	1191	broad.mit.edu	37	chr8	27462461	27462461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtatgaattctgttggcGggtgctggaaggccgggcta	16	8	1	1	rs149705964	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27462461	T	T	27462461	3	4	9	1	0	0	0	0	1	0	0	0	3600	1116	39	1	560	1	CLU	8	27462461	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	173509	27462461	118901561	9376	17527											
CCDC25	55246	broad.mit.edu	37	chr8	27610105	27610105	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtcttctatattctctccCtgaaacacaaaaataaacca	2	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27610105	G	G	27610105	5	3	9	1	0	0	0	0	0	0	1	0	2827	695	24	4	478	4	CCDC25	8	27610105	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	147644	27610105	118753917	9377	17528											
ESCO2	157570	broad.mit.edu	37	chr8	27633139	27633139	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatccaccttcttgtctctCttgttctctcctattttcta	2	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27633139	A	A	27633139	1	1	9	0	1	0	0	0	0	0	0	0	5291	928	32	3		3	ESCO2	8	27633139	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23034	27633139	118730883	9378	17529											
ESCO2	157570	broad.mit.edu	37	chr8	27634495	27634495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcttagaaaatcgtccCtggaaaatgagccgtcactg	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27634495	A	A	27634495	3	1	9	1	0	0	0	0	1	0	0	0	5291	680	24	2	676	2	ESCO2	8	27634495	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1356	27634495	118729527	9379	17530											
C8orf80	389643	broad.mit.edu	37	chr8	27880974	27880974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctccttgtattcactccCgacatctacaggagagcaga	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27880974	A	A	27880974	3	1	9	1	0	0	0	0	1	0	0	0	2465	652	23	1	143	1	C8orf80	8	27880974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	246479	27880974	118483048	9380	17531											
C8orf80	389643	broad.mit.edu	37	chr8	27927151	27927151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcaaaacccttctggtcCgtgattccaatttttcatct	5	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27927151	A	A	27927151	3	1	9	1	0	0	0	0	1	0	0	0	2465	652	23	1	2287	1	C8orf80	8	27927151	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46177	27927151	118436871	9381	17532											
ZNF395	55893	broad.mit.edu	37	chr8	28210125	28210125	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacgtgtcgtttgatgccCacaatggagcgcagaacttt	11	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28210125	A	A	28210125	2	1	9	1	0	0	0	0	0	0	0	1	18008	581	21	2		2	ZNF395	8	28210125	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	282974	28210125	118153897	9382	17533											
FBXO16	157574	broad.mit.edu	37	chr8	28340891	28340891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaatagctgatggtttaGgggtgtccaggtgctcatct	12	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28340891	T	T	28340891	3	4	9	1	0	0	0	0	1	0	0	0	5786	991	35	2	837	2	FBXO16	8	28340891	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	130766	28340891	118023131	9383	17534											
FZD3	7976	broad.mit.edu	37	chr8	28378279	28378279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcgtaggctgtgtcagcGggcttacagtgagtgttcga	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28378279	T	T	28378279	3	4	9	1	0	0	0	0	1	0	0	0	6191	1116	39	1	320	1	FZD3	8	28378279	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37388	28378279	117985743	9384	17535											
FZD3	7976	broad.mit.edu	37	chr8	28384776	28384776	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatggtttttggtgtcccCgagagttaaaaattgatcct	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28384776	A	A	28384776	2	1	9	1	0	0	0	0	0	0	0	1	6191	644	23	1		1	FZD3	8	28384776	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6497	28384776	117979246	9385	17536											
FZD3	7976	broad.mit.edu	37	chr8	28384884	28384884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaagaactgtcatttgctCgctatttcataggattgatt	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28384884	A	A	28384884	3	1	9	1	0	0	0	0	1	0	0	0	6191	884	31	3	617	3	FZD3	8	28384884	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	28384884	117979138	9386	17537											
FZD3	7976	broad.mit.edu	37	chr8	28409239	28409239	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacatgctttgaatgggcCagtttttttcatggtcgtag	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28409239	A	A	28409239	2	1	9	1	0	0	0	0	0	0	0	1	6191	581	21	2		2	FZD3	8	28409239	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24355	28409239	117954783	9387	17538											
EXTL3	2137	broad.mit.edu	37	chr8	28575163	28575163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgacagtatttttaatacCgtgctggctatgattaggac	10	7	0	2	rs112724129		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28575163	A	A	28575163	2	1	9	1	0	0	0	0	0	0	0	1	5370	639	23	1		1	EXTL3	8	28575163	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	165924	28575163	117788859	9388	17539											
EXTL3	2137	broad.mit.edu	37	chr8	28600646	28600646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgccccaggccatccGggacatggtggatgaataca	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28600646	T	T	28600646	3	4	9	1	0	0	0	0	1	0	0	0	5370	1116	39	1	2479	1	EXTL3	8	28600646	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25483	28600646	117763376	9389	17540											
INTS9	55756	broad.mit.edu	37	chr8	28717005	28717005	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaagtcatgtccagtcCgcagtccaacataatggtgg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28717005	A	A	28717005	4	1	9	1	0	0	0	0	0	1	0	0	7855	661	23	1	1955	1	INTS9	8	28717005	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116359	28717005	117647017	9390	17541											
HMBOX1	79618	broad.mit.edu	37	chr8	28828064	28828064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttgcttattcagagtccCtaaaaatgtctgtattctta	5	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28828064	A	A	28828064	1	1	9	0	1	0	0	0	0	0	0	0	7285	696	24	2		2	HMBOX1	8	28828064	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	111059	28828064	117535958	9391	17542											
KIF13B	23303	broad.mit.edu	37	chr8	28984776	28984776	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttcgacttgaactctccGggactgcccctgggtcacag	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28984776	T	T	28984776	2	4	9	1	0	0	0	0	0	0	0	1	8345	1115	39	1		1	KIF13B	8	28984776	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	156712	28984776	117379246	9392	17543											
KIF13B	23303	broad.mit.edu	37	chr8	28989889	28989889	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagggcggggtttttccGgggatcgtttattttatgtc	13	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28989889	T	T	28989889	2	4	9	1	0	0	0	0	0	0	0	1	8345	1115	39	1		1	KIF13B	8	28989889	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5113	28989889	117374133	9393	17544											
KIF13B	23303	broad.mit.edu	37	chr8	29025014	29025014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggctcgatctgcatacCgcagagttgagagggtttca	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29025014	A	A	29025014	3	1	9	1	0	0	0	0	1	0	0	0	8345	652	23	1	4566	1	KIF13B	8	29025014	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35125	29025014	117339008	9394	17545											
KIF13B	23303	broad.mit.edu	37	chr8	29037732	29037732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgcgagatttgttaccCtcagacatcaacgactcaat	7	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29037732	A	A	29037732	3	1	9	1	0	0	0	0	1	0	0	0	8345	680	24	2	5003	2	KIF13B	8	29037732	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12718	29037732	117326290	9395	17546											
KIF13B	23303	broad.mit.edu	37	chr8	29048450	29048450	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgccaagcaatcgtgtaaGggaaaaaatactgaacccct	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29048450	T	T	29048450	1	4	9	0	1	0	0	0	0	0	0	0	8345	1015	35	2		2	KIF13B	8	29048450	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10718	29048450	117315572	9396	17547											
TMEM66	51669	broad.mit.edu	37	chr8	29931509	29931509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatgggatccagcctgcGggaggtggtatagcggtcat	18	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29931509	T	T	29931509	3	4	9	1	0	0	0	0	1	0	0	0	16318	1116	39	1	873	1	TMEM66	8	29931509	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	883059	29931509	116432513	9397	17548											
TMEM66	51669	broad.mit.edu	37	chr8	29931556	29931556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaagagcttttacatccCgcagcaacattctgtctgaa	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29931556	A	A	29931556	3	1	9	1	0	0	0	0	1	0	0	0	16318	652	23	1	920	1	TMEM66	8	29931556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	29931556	116432466	9398	17549											
RBPMS	11030	broad.mit.edu	37	chr8	30332304	30332304	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttttccaggtccggaccCtatttgtcagtggccttcct	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30332304	A	A	30332304	3	1	9	1	0	0	0	0	1	0	0	0	13271	680	24	2	82	2	RBPMS	8	30332304	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	400748	30332304	116031718	9399	17550											
RBPMS	11030	broad.mit.edu	37	chr8	30402154	30402154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcccaggtaattgataccCatcggccaggacttcactca	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30402154	A	A	30402154	1	1	9	0	1	0	0	0	0	0	0	0	13271	609	21	2		2	RBPMS	8	30402154	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	69850	30402154	115961868	9400	17551											
RBPMS	11030	broad.mit.edu	37	chr8	30402206	30402206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttcaaacttggttccCgagagcacaccatacaacta	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30402206	A	A	30402206	1	1	9	0	1	0	0	0	0	0	0	0	13271	667	23	1		1	RBPMS	8	30402206	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	30402206	115961816	9401	17552											
GTF2E2	2961	broad.mit.edu	37	chr8	30464632	30464632	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtattttcttcttatcGggacgatttacaaatagtat	6	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30464632	T	T	30464632	2	4	9	1	0	0	0	0	0	0	0	1	6922	1103	39	1		1	GTF2E2	8	30464632	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	62426	30464632	115899390	9402	17553											
GSR	2936	broad.mit.edu	37	chr8	30538494	30538494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaactgcgtgatacatcGgggtaaagctcgttgaatag	13	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30538494	T	T	30538494	3	4	9	1	0	0	0	0	1	0	0	0	6894	1116	39	1	230	1	GSR	8	30538494	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73862	30538494	115825528	9403	17554											
PPP2CB	5516	broad.mit.edu	37	chr8	30648809	30648809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaatggtaaccacattcCgatcatgacaccaattgtat	6	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30648809	A	A	30648809	3	1	9	1	0	0	0	0	1	0	0	0	12482	652	23	1	176	1	PPP2CB	8	30648809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110315	30648809	115715213	9404	17555											
TEX15	56154	broad.mit.edu	37	chr8	30695440	30695440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgcgcaagtgtcttttGggttctctaagggtaaaagt	12	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30695440	T	T	30695440	3	4	9	1	0	0	0	0	1	0	0	0	15901	1348	47	2	1166	2	TEX15	8	30695440	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46631	30695440	115668582	9405	17556											
TEX15	56154	broad.mit.edu	37	chr8	30705264	30705264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattttcatttttcctatGgacacatatatgttctctag	4	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30705264	T	T	30705264	3	4	9	1	0	0	0	0	1	0	0	0	15901	1348	47	2	7115	2	TEX15	8	30705264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9824	30705264	115658758	9406	17557											
PURG	29942	broad.mit.edu	37	chr8	30889625	30889625	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaatcattccttgtgctGggaggacaatagtctgttct	9	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30889625	T	T	30889625	3	4	9	1	0	0	0	0	1	0	0	0	12937	1348	47	2	482	2	PURG	8	30889625	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	184361	30889625	115474397	9407	17558											
WRN	7486	broad.mit.edu	37	chr8	30916679	30916679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaactcaaggcatgtgttcGgaagagtgtttttgaagatg	12	4	1	3	rs34084741	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30916679	T	T	30916679	3	4	9	1	0	0	0	0	1	0	0	0	17529	1116	39	1	113	1	WRN	8	30916679	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27054	30916679	115447343	9408	17559											
WRN	7486	broad.mit.edu	37	chr8	30982418	30982418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatttaaaattttgtcttGggtagaatcatcttgtctca	6	5	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30982418	T	T	30982418	1	4	9	0	1	0	0	0	0	0	0	0	17529	1363	47	2		2	WRN	8	30982418	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65739	30982418	115381604	9409	17560											
WRN	7486	broad.mit.edu	37	chr8	31012184	31012184	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcaagaagaacagaagacGagtctggtagcaaaaaataa	9	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31012184	T	T	31012184	2	4	9	1	0	0	0	0	0	0	0	1	17529	1045	37	3		3	WRN	8	31012184	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29766	31012184	115351838	9410	17561											
NRG1	3084	broad.mit.edu	37	chr8	32617902	32617902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaacccctgattcctacCgagactctcctcatagtgaa	7	13	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32617902	A	A	32617902	2	1	9	1	0	0	0	0	0	0	0	1	10742	644	23	1		1	NRG1	8	32617902	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1605718	32617902	113746120	9411	17562											
MAK16	84549	broad.mit.edu	37	chr8	33346572	33346572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatctgatttactggcccCgtttcattcgacacaaatgt	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33346572	A	A	33346572	3	1	9	1	0	0	0	0	1	0	0	0	9290	652	23	1	325	1	MAK16	8	33346572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	728670	33346572	113017450	9412	17563											
C8orf41	80185	broad.mit.edu	37	chr8	33371088	33371088	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgacgtgggcacattaccCgtctgacctgaacttcaagg	10	12	2	2	rs149417979	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33371088	A	A	33371088	1	1	9	0	1	0	0	0	0	0	0	0	2453	667	23	1		1	C8orf41	8	33371088	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	24516	33371088	112992934	9413	17564											
RNF122	79845	broad.mit.edu	37	chr8	33408500	33408500	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgtccaggcagagaactgGagcaaggtgctgtctgcctc	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33408500	T	T	33408500	1	4	9	0	1	0	0	0	0	0	0	0	13543	1189	41	3		3	RNF122	8	33408500	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37412	33408500	112955522	9414	17565											
RNF122	79845	broad.mit.edu	37	chr8	33408631	33408631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaggaggcatgatgtcCaaagaagaaccaaccactgg	12	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33408631	A	A	33408631	1	1	9	0	1	0	0	0	0	0	0	0	13543	609	21	2		2	RNF122	8	33408631	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	131	33408631	112955391	9415	17566											
UNC5D	137970	broad.mit.edu	37	chr8	35579814	35579814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtcattggtgtcaccCtttacagacggagccagagt	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35579814	A	A	35579814	3	1	9	1	0	0	0	0	1	0	0	0	17121	681	24	2	1238	2	UNC5D	8	35579814	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2171183	35579814	110784208	9416	17567											
KCNU1	157855	broad.mit.edu	37	chr8	36766905	36766905	+	Missense_Mutation	SNP	C	A	A													tggagatgcccactcagcccCgatggggcttcggaactttg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36766905	A	A	36766905	3	1	9	1	0	0	0	0	1	0	0	0	8163	652	23	1	2265	1	KCNU1	8	36766905	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1187091	36766905	109597117	9417	17568	114	2									
KCNU1	157855	broad.mit.edu	37	chr8	36766909	36766909	+	Missense_Mutation	SNP	G	T	T													gatgcccactcagccccgatGgggcttcggaactttgtaat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36766909	T	T	36766909	3	4	9	1	0	0	0	0	1	0	0	0	8163	1348	47	2	2269	2	KCNU1	8	36766909	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	36766909	109597113	9418	17569	114	2									
ERLIN2	11160	broad.mit.edu	37	chr8	37595452	37595452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcactgatggctcagttGggagcagttgtggctgtggc	17	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37595452	T	T	37595452	3	4	9	1	0	0	0	0	1	0	0	0	5275	1339	47	2	14	2	ERLIN2	8	37595452	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	828543	37595452	108768570	9419	17570											
ERLIN2	11160	broad.mit.edu	37	chr8	37601812	37601812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcttacgccatcaccctGggggactgcaccatattcta	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37601812	T	T	37601812	1	4	9	0	1	0	0	0	0	0	0	0	5275	1363	47	2		2	ERLIN2	8	37601812	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6360	37601812	108762210	9420	17571											
PROSC	11212	broad.mit.edu	37	chr8	37633013	37633013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccaggtactggggggtcGgggagattgctcgtgtgcta	17	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37633013	T	T	37633013	1	4	9	0	1	0	0	0	0	0	0	0	12665	1131	39	1		1	PROSC	8	37633013	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31201	37633013	108731009	9421	17572											
BRF2	55290	broad.mit.edu	37	chr8	37702614	37702614	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggcaagggatgcctcccGgtcaccagccacgtctcatt	11	15	2	0	rs144248897		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37702614	T	T	37702614	2	4	9	1	0	0	0	0	0	0	0	1	1520	1103	39	1		1	BRF2	8	37702614	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	69601	37702614	108661408	9422	17573											
BRF2	55290	broad.mit.edu	37	chr8	37704553	37704553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgattaagacgcagcaccCaaccaacacctccttctttt	6	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37704553	A	A	37704553	3	1	9	1	0	0	0	0	1	0	0	0	1520	594	21	2	912	2	BRF2	8	37704553	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1939	37704553	108659469	9423	17574											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37729066	37729066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggatgtgccaggaggcGggcttggactcccatttccc	14	13	0	0	rs142206758		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37729066	T	T	37729066	3	4	9	1	0	0	0	0	1	0	0	0	13001	1116	39	1	609	1	RAB11FIP1	8	37729066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24513	37729066	108634956	9424	17575											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37729086	37729086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttggactcccatttccCatcggtttttcttcctcacc	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37729086	A	A	37729086	3	1	9	1	0	0	0	0	1	0	0	0	13001	594	21	2	629	2	RAB11FIP1	8	37729086	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	37729086	108634936	9425	17576											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37729385	37729385	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcttcaacctgatctcCgtcatcttcaacctgatcta	3	14	8	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37729385	A	A	37729385	4	1	9	1	0	0	0	0	0	1	0	0	13001	661	23	1	928	1	RAB11FIP1	8	37729385	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	299	37729385	108634637	9426	17577											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37730364	37730364	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtttgaaaagtgatccCagggcagaagaaccagaatt	12	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37730364	A	A	37730364	2	1	9	1	0	0	0	0	0	0	0	1	13001	581	21	2		2	RAB11FIP1	8	37730364	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	979	37730364	108633658	9427	17578											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37730580	37730580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtctgcaccatgtccCaattcagaggggacagatgc	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37730580	A	A	37730580	3	1	9	1	0	0	0	0	1	0	0	0	13001	593	21	2	2123	2	RAB11FIP1	8	37730580	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	216	37730580	108633442	9428	17579											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37732224	37732224	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggtcttcagcaggcccCgatgcgtcctcccccggctt	10	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37732224	A	A	37732224	2	1	9	1	0	0	0	0	0	0	0	1	13001	639	23	1		1	RAB11FIP1	8	37732224	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1644	37732224	108631798	9429	17580											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37732715	37732715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgatgcagacattagagcGggaaaggacatcattcttag	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37732715	T	T	37732715	3	4	9	1	0	0	0	0	1	0	0	0	13001	1116	39	1	2927	1	RAB11FIP1	8	37732715	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	491	37732715	108631307	9430	17581											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37732818	37732818	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttgcttaagatccgtactCgctgttctcttgtgagacat	9	9	1	2	rs144026346		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37732818	A	A	37732818	2	1	9	1	0	0	0	0	0	0	0	1	13001	871	31	3		3	RAB11FIP1	8	37732818	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	37732818	108631204	9431	17582											
GOT1L1	137362	broad.mit.edu	37	chr8	37791958	37791958	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttaatctgaccgttcttGgggatatagatgtgcttctt	10	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37791958	T	T	37791958	2	4	9	1	0	0	0	0	0	0	0	1	6644	1335	47	2		2	GOT1L1	8	37791958	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	59140	37791958	108572064	9432	17583											
ASH2L	9070	broad.mit.edu	37	chr8	37967892	37967892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtataatttggctcttcGgcagatcctgtctacctttc	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37967892	T	T	37967892	1	4	9	0	1	0	0	0	0	0	0	0	1046	1131	39	1		1	ASH2L	8	37967892	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	175934	37967892	108396130	9433	17584											
DDHD2	23259	broad.mit.edu	37	chr8	38109668	38109668	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtctgtgaaataccccCggctcatctataaaccagag	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38109668	A	A	38109668	2	1	9	1	0	0	0	0	0	0	0	1	4360	643	23	1		1	DDHD2	8	38109668	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	141776	38109668	108254354	9434	17585											
DDHD2	23259	broad.mit.edu	37	chr8	38110568	38110568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcttttaccagagctcCataccctgccttacaagctt	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38110568	A	A	38110568	3	1	9	1	0	0	0	0	1	0	0	0	4360	594	21	2	1930	2	DDHD2	8	38110568	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	900	38110568	108253454	9435	17586											
WHSC1L1	54904	broad.mit.edu	37	chr8	38173457	38173457	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactcagtcctctagaatcGgagtcagatgtgtctctgta	9	10	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38173457	T	T	38173457	2	4	9	1	0	0	0	0	0	0	0	1	17490	1103	39	1		1	WHSC1L1	8	38173457	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	62889	38173457	108190565	9436	17587											
WHSC1L1	54904	broad.mit.edu	37	chr8	38187103	38187103	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtggctcttcctcttcCgcacttgtgtgccgcctctg	12	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38187103	A	A	38187103	2	1	9	1	0	0	0	0	0	0	0	1	17490	639	23	1		1	WHSC1L1	8	38187103	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13646	38187103	108176919	9437	17588											
LETM2	137994	broad.mit.edu	37	chr8	38257950	38257950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatcttttatgtaatgcCgaacaacttcggggctgggc	11	10	1	0	rs144441260	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38257950	A	A	38257950	1	1	9	0	1	0	0	0	0	0	0	0	8807	667	23	1		1	LETM2	8	38257950	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	70847	38257950	108106072	9438	17589											
FGFR1	2260	broad.mit.edu	37	chr8	38272337	38272337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgatgtggtgaatgtccCgtgcgaggccaaagtctgct	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38272337	A	A	38272337	3	1	9	1	0	0	0	0	1	0	0	0	5920	652	23	1	551	1	FGFR1	8	38272337	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14387	38272337	108091685	9439	17590											
FGFR1	2260	broad.mit.edu	37	chr8	38275349	38275349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgtttgcttggaatgGgacaagattttctttgcaag	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38275349	T	T	38275349	1	4	9	0	1	0	0	0	0	0	0	0	5920	1247	43	2		2	FGFR1	8	38275349	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3012	38275349	108088673	9440	17591											
FGFR1	2260	broad.mit.edu	37	chr8	38275421	38275421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagccactttggtcacacGgttgggtttgtccttgtcca	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38275421	T	T	38275421	3	4	9	1	0	0	0	0	1	0	0	0	5920	1116	39	1	981	1	FGFR1	8	38275421	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	72	38275421	108088601	9441	17592											
FGFR1	2260	broad.mit.edu	37	chr8	38282115	38282115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactggatgtgcggctgcGggtcactgtacaccttacac	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38282115	T	T	38282115	3	4	9	1	0	0	0	0	1	0	0	0	5920	1116	39	1	1908	1	FGFR1	8	38282115	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6694	38282115	108081907	9442	17593											
TACC1	6867	broad.mit.edu	37	chr8	38699817	38699817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcccagaagatgaacaaaGgacaagtatgacctctcaga	8	9	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38699817	T	T	38699817	3	4	9	1	0	0	0	0	1	0	0	0	15620	1000	35	2	2011	2	TACC1	8	38699817	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	417702	38699817	107664205	9443	17594											
PLEKHA2	59339	broad.mit.edu	37	chr8	38810863	38810863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggatgttctgaagaccCatgaatgtctggtcaagtct	10	7	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38810863	A	A	38810863	3	1	9	1	0	0	0	0	1	0	0	0	12151	594	21	2	781	2	PLEKHA2	8	38810863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111046	38810863	107553159	9444	17595											
HTRA4	203100	broad.mit.edu	37	chr8	38832568	38832568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaccagaagcgcaggccCgctcaggaggaattacaact	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38832568	A	A	38832568	3	1	9	1	0	0	0	0	1	0	0	0	7526	652	23	1	491	1	HTRA4	8	38832568	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21705	38832568	107531454	9445	17596											
ADAM9	8754	broad.mit.edu	37	chr8	38871463	38871463	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagataacatatatataaacGgtgttttatttctcttccag	5	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38871463	C	C	38871463	1	2	9	0	1	0	0	0	0	0	0	0	253	1131	39	4		4	ADAM9	8	38871463	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38895	38871463	107492559	9446	17597											
ADAM9	8754	broad.mit.edu	37	chr8	38873653	38873653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaatcattgtcattatcGgggctatgtggagggagttc	13	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38873653	T	T	38873653	3	4	9	1	0	0	0	0	1	0	0	0	253	1116	39	1	368	1	ADAM9	8	38873653	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2190	38873653	107490369	9447	17598											
ADAM9	8754	broad.mit.edu	37	chr8	38899632	38899632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtgtgactgtggtactcCaaaggtcagtttaatttttg	11	5	1	2	rs142079221		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38899632	A	A	38899632	3	1	9	1	0	0	0	0	1	0	0	0	253	594	21	2	1344	2	ADAM9	8	38899632	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25979	38899632	107464390	9448	17599											
ADAM32	203102	broad.mit.edu	37	chr8	39009040	39009040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgaaagaacaaccaatGgatgacaacatttttataag	7	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39009040	T	T	39009040	3	4	9	1	0	0	0	0	1	0	0	0	249	1348	47	2	520	2	ADAM32	8	39009040	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109408	39009040	107354982	9449	17600											
ADAM32	203102	broad.mit.edu	37	chr8	39027493	39027493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggaacaatgtgtattactCgttattctgcaggagttgca	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39027493	A	A	39027493	3	1	9	1	0	0	0	0	1	0	0	0	249	884	31	3	930	3	ADAM32	8	39027493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18453	39027493	107336529	9450	17601											
ADAM2	2515	broad.mit.edu	37	chr8	39627141	39627141	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgtaagggtttccataaActacctacccttagaataaa	5	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39627141	T	T	39627141	1	4	9	0	1	0	0	0	0	0	0	0	241	58	2	5		5	ADAM2	8	39627141	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	599648	39627141	106736881	9451	17602											
ANK1	286	broad.mit.edu	37	chr8	41552707	41552707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctaccttcgtccatccCgttgaggatctgatccaggt	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41552707	A	A	41552707	3	1	9	1	0	0	0	0	1	0	0	0	620	652	23	1	2932	1	ANK1	8	41552707	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1925566	41552707	104811315	9452	17603											
ANK1	286	broad.mit.edu	37	chr8	41573376	41573376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctggtcatcctggacccCgaagggaaaacaaagaagaa	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41573376	A	A	41573376	1	1	9	0	1	0	0	0	0	0	0	0	620	667	23	1		1	ANK1	8	41573376	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20669	41573376	104790646	9453	17604											
ANK1	286	broad.mit.edu	37	chr8	41580669	41580669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggcttggattggtgcccCgtggtccagcaggatctctg	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41580669	A	A	41580669	3	1	9	1	0	0	0	0	1	0	0	0	620	652	23	1	5252	1	ANK1	8	41580669	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7293	41580669	104783353	9454	17605											
ANK1	286	broad.mit.edu	37	chr8	41615556	41615556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctccatcccacttacctGgttacaggtgttaatatcta	6	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41615556	T	T	41615556	3	4	9	1	0	0	0	0	1	0	0	0	620	1357	47	2	6036	2	ANK1	8	41615556	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34887	41615556	104748466	9455	17606											
MYST3	7994	broad.mit.edu	37	chr8	41790017	41790017	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaattgacattataggcGggagtaggcatcagattaac	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41790017	T	T	41790017	2	4	9	1	0	0	0	0	0	0	0	1	10198	1103	39	1		1	MYST3	8	41790017	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	174461	41790017	104574005	9456	17607											
MYST3	7994	broad.mit.edu	37	chr8	41798488	41798488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccctcactgtagcgacGgggcagcctctcacttcctt	9	16	3	0	rs146209687	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41798488	T	T	41798488	3	4	9	1	0	0	0	0	1	0	0	0	10198	1116	39	1	3115	1	MYST3	8	41798488	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8471	41798488	104565534	9457	17608											
MYST3	7994	broad.mit.edu	37	chr8	41836190	41836190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctttaacctgttttttGgacgtcctattggattagta	8	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41836190	T	T	41836190	3	4	9	1	0	0	0	0	1	0	0	0	10198	1348	47	2	5049	2	MYST3	8	41836190	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37702	41836190	104527832	9458	17609											
MYST3	7994	broad.mit.edu	37	chr8	41838376	41838376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcaccttttggcatacGggtgagtggcggatcacaac	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41838376	T	T	41838376	3	4	9	1	0	0	0	0	1	0	0	0	10198	1116	39	1	5171	1	MYST3	8	41838376	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2186	41838376	104525646	9459	17610											
MYST3	7994	broad.mit.edu	37	chr8	41845079	41845079	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggggattggttcagcaacCggctgtgaagaaaaacacaa	12	7	1	2	rs148925079		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41845079	A	A	41845079	2	1	9	1	0	0	0	0	0	0	0	1	10198	639	23	1		1	MYST3	8	41845079	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6703	41845079	104518943	9460	17611											
MYST3	7994	broad.mit.edu	37	chr8	41906476	41906476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatccactcagtataaagcGggtttgcgagttttaccatg	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41906476	T	T	41906476	3	4	9	1	0	0	0	0	1	0	0	0	10198	1116	39	1	6058	1	MYST3	8	41906476	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61397	41906476	104457546	9461	17612											
AP3M2	10947	broad.mit.edu	37	chr8	42019812	42019812	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaggaagcacgaatgtGggtgaccagcttcccactgg	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42019812	T	T	42019812	2	4	9	1	0	0	0	0	0	0	0	1	750	1335	47	2		2	AP3M2	8	42019812	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	113336	42019812	104344210	9462	17613											
AP3M2	10947	broad.mit.edu	37	chr8	42019864	42019864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgccttggcgacggactGgggtgaaatataccaacaat	13	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42019864	T	T	42019864	3	4	9	1	0	0	0	0	1	0	0	0	750	1348	47	2	521	2	AP3M2	8	42019864	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	42019864	104344158	9463	17614											
AP3M2	10947	broad.mit.edu	37	chr8	42022898	42022898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcctgaaagcactgcGggtgtttaatgcccacttct	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42022898	T	T	42022898	1	4	9	0	1	0	0	0	0	0	0	0	750	1131	39	1		1	AP3M2	8	42022898	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3034	42022898	104341124	9464	17615											
AP3M2	10947	broad.mit.edu	37	chr8	42025194	42025194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttgaagatgctgtcttGggatgtaggaaaaataaatc	10	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42025194	T	T	42025194	3	4	9	1	0	0	0	0	1	0	0	0	750	1357	47	2	1048	2	AP3M2	8	42025194	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2296	42025194	104338828	9465	17616											
PLAT	5327	broad.mit.edu	37	chr8	42040327	42040327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatcatggaattccacGggaggcaggaggcacccgac	14	11	2	0	rs148365121		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42040327	T	T	42040327	3	4	9	1	0	0	0	0	1	0	0	0	12116	1116	39	1	1003	1	PLAT	8	42040327	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15133	42040327	104323695	9466	17617											
PLAT	5327	broad.mit.edu	37	chr8	42040519	42040519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctggaggccgctagccCggcactgagaagagtgtaac	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42040519	A	A	42040519	1	1	9	0	1	0	0	0	0	0	0	0	12116	667	23	1		1	PLAT	8	42040519	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	192	42040519	104323503	9467	17618											
PLAT	5327	broad.mit.edu	37	chr8	42046411	42046411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggcctcctaaagtgctGggatcacaggcatgcaccac	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42046411	T	T	42046411	1	4	9	0	1	0	0	0	0	0	0	0	12116	1363	47	2		2	PLAT	8	42046411	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5892	42046411	104317611	9468	17619											
POLB	5423	broad.mit.edu	37	chr8	42202580	42202580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaagagttcacacgtgtcCaaatttggtgggttcccacc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42202580	A	A	42202580	1	1	9	0	1	0	0	0	0	0	0	0	12284	609	21	2		2	POLB	8	42202580	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	156169	42202580	104161442	9469	17620											
DKK4	27121	broad.mit.edu	37	chr8	42231870	42231870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctcagacaactttctccCtcttgtcctgtaacaaggtt	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42231870	A	A	42231870	3	1	9	1	0	0	0	0	1	0	0	0	4587	680	24	2	255	2	DKK4	8	42231870	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29290	42231870	104132152	9470	17621											
SLC20A2	6575	broad.mit.edu	37	chr8	42294977	42294977	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagatctttgtagagcccCgagtctttgtgcacggtgtg	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42294977	A	A	42294977	2	1	9	1	0	0	0	0	0	0	0	1	14552	639	23	1		1	SLC20A2	8	42294977	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63107	42294977	104069045	9471	17622											
SLC20A2	6575	broad.mit.edu	37	chr8	42329660	42329660	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccatgagagtctccacCgtctcgttgtacaggttcac	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42329660	A	A	42329660	2	1	9	1	0	0	0	0	0	0	0	1	14552	639	23	1		1	SLC20A2	8	42329660	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34683	42329660	104034362	9472	17623											
SLC20A2	6575	broad.mit.edu	37	chr8	42329732	42329732	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttggcgcctagtaacacGgagccggtggtttcaaatat	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42329732	T	T	42329732	2	4	9	1	0	0	0	0	0	0	0	1	14552	1103	39	1		1	SLC20A2	8	42329732	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	72	42329732	104034290	9473	17624											
THAP1	55145	broad.mit.edu	37	chr8	42694455	42694455	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatactgctatacttggtGggtttaaagttttttcttct	7	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42694455	T	T	42694455	2	4	9	1	0	0	0	0	0	0	0	1	15964	1335	47	2		2	THAP1	8	42694455	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	364723	42694455	103669567	9474	17625											
RNF170	81790	broad.mit.edu	37	chr8	42720664	42720664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaacaaacacataaccCattaatattgatgttttaaa	2	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42720664	A	A	42720664	1	1	9	0	1	0	0	0	0	0	0	0	13573	609	21	2		2	RNF170	8	42720664	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26209	42720664	103643358	9475	17626											
RNF170	81790	broad.mit.edu	37	chr8	42742938	42742938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactgccacaagtacttggtCgcttactccttctataactg	6	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42742938	A	A	42742938	3	1	9	1	0	0	0	0	1	0	0	0	13573	884	31	3	941	3	RNF170	8	42742938	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22274	42742938	103621084	9476	17627											
HGSNAT	138050	broad.mit.edu	37	chr8	43033358	43033358	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattatcattgtgaatccCaattattgccttggtccatg	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43033358	A	A	43033358	2	1	9	1	0	0	0	0	0	0	0	1	7155	581	21	2		2	HGSNAT	8	43033358	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	290420	43033358	103330664	9477	17628											
HGSNAT	138050	broad.mit.edu	37	chr8	43037295	43037295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcttttgcagtgtcttgGgacaaggtgcgcattcctgg	14	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43037295	T	T	43037295	3	4	9	1	0	0	0	0	1	0	0	0	7155	1241	43	2	1062	2	HGSNAT	8	43037295	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3937	43037295	103326727	9478	17629											
POTEA	340441	broad.mit.edu	37	chr8	43160023	43160023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcatggactaggtgaaGgtgtggatggtttcagaatt	14	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43160023	T	T	43160023	1	4	9	0	1	0	0	0	0	0	0	0	12356	1015	35	2		2	POTEA	8	43160023	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	122728	43160023	103203999	9479	17630											
POTEA	340441	broad.mit.edu	37	chr8	43172567	43172567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttatattcaaatgtttcCgttgaattagatttttacat	4	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43172567	A	A	43172567	1	1	9	0	1	0	0	0	0	0	0	0	12356	667	23	1		1	POTEA	8	43172567	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12544	43172567	103191455	9480	17631											
POTEA	340441	broad.mit.edu	37	chr8	43197512	43197512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggccttttaatgtatccCacagtaatattcacacacat	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43197512	A	A	43197512	1	1	9	0	1	0	0	0	0	0	0	0	12356	609	21	2		2	POTEA	8	43197512	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24945	43197512	103166510	9481	17632											
KIAA0146	23514	broad.mit.edu	37	chr8	48586375	48586375	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttacagagcctgccttctGgtacaagatgcctgtggaat	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48586375	T	T	48586375	2	4	9	1	0	0	0	0	0	0	0	1	8227	1335	47	2		2	KIAA0146	8	48586375	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5388863	48586375	97777647	9482	17633											
KIAA0146	23514	broad.mit.edu	37	chr8	48612971	48612971	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttgttccaggacagcGgggattttcagtttgattga	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48612971	T	T	48612971	2	4	9	1	0	0	0	0	0	0	0	1	8227	1103	39	1		1	KIAA0146	8	48612971	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26596	48612971	97751051	9483	17634											
KIAA0146	23514	broad.mit.edu	37	chr8	48647945	48647945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtccgtaaccgcccaccCgaccagctgcattggattgg	10	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48647945	A	A	48647945	3	1	9	1	0	0	0	0	1	0	0	0	8227	652	23	1	2759	1	KIAA0146	8	48647945	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34974	48647945	97716077	9484	17635											
PRKDC	5591	broad.mit.edu	37	chr8	48690323	48690323	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtctgagcggaaggccCggagtgcgtgtaccatgatg	17	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48690323	A	A	48690323	3	1	9	1	0	0	0	0	1	0	0	0	12627	652	23	1	432	1	PRKDC	8	48690323	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42378	48690323	97673699	9485	17636											
PRKDC	5591	broad.mit.edu	37	chr8	48748977	48748977	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactggccagcgagctgagaGggacccttcctgggtacggg	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48748977	A	A	48748977	3	1	9	1	0	0	0	0	1	0	0	0	12627	1000	35	4	4629	4	PRKDC	8	48748977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58654	48748977	97615045	9486	17637											
PRKDC	5591	broad.mit.edu	37	chr8	48772179	48772179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgtgatcacccgtctcCgaaaacgaccagtggcaggt	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48772179	A	A	48772179	3	1	9	1	0	0	0	0	1	0	0	0	12627	652	23	1	6350	1	PRKDC	8	48772179	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23202	48772179	97591843	9487	17638											
MCM4	4173	broad.mit.edu	37	chr8	48887328	48887328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagattggcagtagccGgggaatggtttctgcatacc	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48887328	T	T	48887328	3	4	9	1	0	0	0	0	1	0	0	0	9482	1116	39	1	2225	1	MCM4	8	48887328	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	115149	48887328	97476694	9488	17639											
MCM4	4173	broad.mit.edu	37	chr8	48887372	48887372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagctagagtcattaatcCgcttagcagaagcccatgct	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48887372	A	A	48887372	3	1	9	1	0	0	0	0	1	0	0	0	9482	652	23	1	2269	1	MCM4	8	48887372	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	48887372	97476650	9489	17640											
SNTG1	54212	broad.mit.edu	37	chr8	51306856	51306856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttctgcttttcaaacaGggaaaacagaatataagcgg	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51306856	T	T	51306856	1	4	9	0	1	0	0	0	0	0	0	0	14988	1015	35	2		2	SNTG1	8	51306856	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2419484	51306856	95057166	9490	17641											
SNTG1	54212	broad.mit.edu	37	chr8	51442810	51442810	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatctcaactaccatccCaacaatacagtaagatgacc	3	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51442810	A	A	51442810	2	1	9	1	0	0	0	0	0	0	0	1	14988	581	21	2		2	SNTG1	8	51442810	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	135954	51442810	94921212	9491	17642											
SNTG1	54212	broad.mit.edu	37	chr8	51569497	51569497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgggctggtgtgaagcccGggagcaagaccccctccagg	15	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51569497	T	T	51569497	3	4	9	1	0	0	0	0	1	0	0	0	14988	1116	39	1	924	1	SNTG1	8	51569497	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126687	51569497	94794525	9492	17643											
SNTG1	54212	broad.mit.edu	37	chr8	51569533	51569533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggacagagtgtactcccCgaccttcctggccctgaggg	12	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51569533	A	A	51569533	3	1	9	1	0	0	0	0	1	0	0	0	14988	652	23	1	960	1	SNTG1	8	51569533	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	51569533	94794489	9493	17644											
PCMTD1	115294	broad.mit.edu	37	chr8	52733173	52733173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccttttgggtggagccCtttgaggaatccccttggcc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52733173	A	A	52733173	3	1	9	1	0	0	0	0	1	0	0	0	11680	681	24	2	265	2	PCMTD1	8	52733173	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1163640	52733173	93630849	9494	17645											
ST18	9705	broad.mit.edu	37	chr8	53025828	53025828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcattccggggaatagtccCgttccagattgctgtacata	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53025828	A	A	53025828	3	1	9	1	0	0	0	0	1	0	0	0	15330	652	23	1	73	1	ST18	8	53025828	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	292655	53025828	93338194	9495	17646											
ST18	9705	broad.mit.edu	37	chr8	53045834	53045834	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttccagtcacgtgcccCgagccatcgcagcctggggt	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53045834	A	A	53045834	2	1	9	1	0	0	0	0	0	0	0	1	15330	639	23	1		1	ST18	8	53045834	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20006	53045834	93318188	9496	17647											
ST18	9705	broad.mit.edu	37	chr8	53079510	53079510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatcacatccagggatcGggcacttggtctccctcttt	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53079510	T	T	53079510	3	4	9	1	0	0	0	0	1	0	0	0	15330	1116	39	1	2101	1	ST18	8	53079510	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33676	53079510	93284512	9497	17648											
ST18	9705	broad.mit.edu	37	chr8	53092762	53092762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttggcagtctgcttttGggctgtagtgtcggggcttc	14	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53092762	T	T	53092762	3	4	9	1	0	0	0	0	1	0	0	0	15330	1348	47	2	3018	2	ST18	8	53092762	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13252	53092762	93271260	9498	17649											
ST18	9705	broad.mit.edu	37	chr8	53092775	53092775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttttgggctgtagtgtcGgggcttcattagcagggatt	15	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53092775	T	T	53092775	2	4	9	1	0	0	0	0	0	0	0	1	15330	1124	39	1		1	ST18	8	53092775	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	53092775	93271247	9499	17650											
ATP6V1H	51606	broad.mit.edu	37	chr8	54754206	54754206	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcagcaataatattggtGgggacagcagcatccacagc	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54754206	T	T	54754206	2	4	9	1	0	0	0	0	0	0	0	1	1193	1335	47	2		2	ATP6V1H	8	54754206	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1661431	54754206	91609816	9500	17651											
RP1	6101	broad.mit.edu	37	chr8	55541351	55541351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaatagaaaaactgtacGgtaaagcagatattatcaaa	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55541351	T	T	55541351	3	4	9	1	0	0	0	0	1	0	0	0	13643	1116	39	1	4919	1	RP1	8	55541351	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	787145	55541351	90822671	9501	17652											
XKR4	114786	broad.mit.edu	37	chr8	56436037	56436037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttttccagctgtactttGggatcttcatcgtccttcac	8	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56436037	T	T	56436037	3	4	9	1	0	0	0	0	1	0	0	0	17560	1348	47	2	1214	2	XKR4	8	56436037	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	894686	56436037	89927985	9502	17653											
TGS1	96764	broad.mit.edu	37	chr8	56715135	56715135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtacaggctcttctccCgttttgatgatgggattaag	12	7	2	3	rs146432669	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56715135	A	A	56715135	3	1	9	1	0	0	0	0	1	0	0	0	15960	652	23	1	2003	1	TGS1	8	56715135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	279098	56715135	89648887	9503	17654											
LYN	4067	broad.mit.edu	37	chr8	56866572	56866572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctcggggatctatgtcCttctagagatggtgacagga	15	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56866572	A	A	56866572	1	1	9	0	1	0	0	0	0	0	0	0	9195	696	24	2		2	LYN	8	56866572	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	151437	56866572	89497450	9504	17655											
LYN	4067	broad.mit.edu	37	chr8	56882373	56882373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaacatattcaaaaagcccCgtgtgcacgtgcatttgcaa	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56882373	A	A	56882373	1	1	9	0	1	0	0	0	0	0	0	0	9195	667	23	1		1	LYN	8	56882373	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15801	56882373	89481649	9505	17656											
PLAG1	5324	broad.mit.edu	37	chr8	57079424	57079424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgcatggactgaaatGgagtgttgtagaggtttaac	13	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57079424	T	T	57079424	3	4	9	1	0	0	0	0	1	0	0	0	12113	1348	47	2	625	2	PLAG1	8	57079424	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	197051	57079424	89284598	9506	17657											
PENK	5179	broad.mit.edu	37	chr8	57353976	57353976	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtagtccatccaccactctGggcgacctactcttctcatg	8	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57353976	C	C	57353976	3	2	9	1	0	0	0	0	1	0	0	0	11821	1348	47	4	148	4	PENK	8	57353976	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	274552	57353976	89010046	9507	17658											
FAM110B	90362	broad.mit.edu	37	chr8	59059605	59059605	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatatttccgagtggacgcGgacgtggagaggttcttcaa	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59059605	T	T	59059605	2	4	9	1	0	0	0	0	0	0	0	1	5443	1103	39	1		1	FAM110B	8	59059605	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1705629	59059605	87304417	9508	17659											
UBXN2B	137886	broad.mit.edu	37	chr8	59345765	59345765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtagttctttttgtaagcGgtctgaatatatctatggag	12	4	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59345765	T	T	59345765	3	4	9	1	0	0	0	0	1	0	0	0	17041	1116	39	1	400	1	UBXN2B	8	59345765	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	286160	59345765	87018257	9509	17660											
CYP7A1	1581	broad.mit.edu	37	chr8	59404265	59404265	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtagtaatactttaacttGagtccattacaatagaaggt	7	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59404265	T	T	59404265	2	4	9	1	0	0	0	0	0	0	0	1	4229	1277	45	3		3	CYP7A1	8	59404265	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	58500	59404265	86959757	9510	17661											
CYP7A1	1581	broad.mit.edu	37	chr8	59409338	59409338	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccctcttttggaggttctCgtgcctcaagctctctgcca	8	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59409338	A	A	59409338	4	1	9	1	0	0	0	0	0	1	0	0	4229	893	31	3	797	3	CYP7A1	8	59409338	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5073	59409338	86954684	9511	17662											
CYP7A1	1581	broad.mit.edu	37	chr8	59409487	59409487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgctttctgtgtgtccCgccttgtaagatctctgcca	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59409487	A	A	59409487	3	1	9	1	0	0	0	0	1	0	0	0	4229	652	23	1	946	1	CYP7A1	8	59409487	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	59409487	86954535	9512	17663											
NSMAF	8439	broad.mit.edu	37	chr8	59498394	59498394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaactggccaatgtaagccCaaatgaagtgatcatgaaca	9	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59498394	A	A	59498394	1	1	9	0	1	0	0	0	0	0	0	0	10769	609	21	2		2	NSMAF	8	59498394	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88907	59498394	86865628	9513	17664											
NSMAF	8439	broad.mit.edu	37	chr8	59506775	59506775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttggttaagccgcctttcGgggaggaacactgaccttgg	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59506775	T	T	59506775	1	4	9	0	1	0	0	0	0	0	0	0	10769	1131	39	1		1	NSMAF	8	59506775	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8381	59506775	86857247	9514	17665											
TOX	9760	broad.mit.edu	37	chr8	59739411	59739411	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctggctctgtatgctgcGagttgcttcaggtactcctt	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59739411	T	T	59739411	2	4	9	1	0	0	0	0	0	0	0	1	16501	1045	37	3		3	TOX	8	59739411	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	232636	59739411	86624611	9515	17666											
RAB2A	5862	broad.mit.edu	37	chr8	61496839	61496839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggagctttactagtttacGatattacacggtgagaactt	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61496839	T	T	61496839	3	4	9	1	0	0	0	0	1	0	0	0	13025	1058	37	3	273	3	RAB2A	8	61496839	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1757428	61496839	84867183	9516	17667											
CHD7	55636	broad.mit.edu	37	chr8	61655236	61655236	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctccacaagtcaggccGggaagtgctgggataccaat	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61655236	T	T	61655236	2	4	9	1	0	0	0	0	0	0	0	1	3361	1103	39	1		1	CHD7	8	61655236	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	158397	61655236	84708786	9517	17668											
CHD7	55636	broad.mit.edu	37	chr8	61735210	61735210	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaactgggaaagggaattcCgaacctggacagagttgaac	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61735210	A	A	61735210	2	1	9	1	0	0	0	0	0	0	0	1	3361	644	23	1		1	CHD7	8	61735210	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79974	61735210	84628812	9518	17669											
CHD7	55636	broad.mit.edu	37	chr8	61735265	61735265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagtcaagctagtcgtcGgaccattcagttgtatgaaa	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61735265	T	T	61735265	3	4	9	1	0	0	0	0	1	0	0	0	3361	1116	39	1	3203	1	CHD7	8	61735265	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55	61735265	84628757	9519	17670											
CHD7	55636	broad.mit.edu	37	chr8	61736560	61736560	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaagctgttggagggactCaagatgatggacttggtcag	15	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61736560	A	A	61736560	2	1	9	1	0	0	0	0	0	0	0	1	3361	813	29	3		3	CHD7	8	61736560	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1295	61736560	84627462	9520	17671											
CHD7	55636	broad.mit.edu	37	chr8	61736638	61736638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctgacttgatagtccCgttgctcagaatttgatgcc	10	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61736638	A	A	61736638	1	1	9	0	1	0	0	0	0	0	0	0	3361	667	23	1		1	CHD7	8	61736638	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	61736638	84627384	9521	17672											
CHD7	55636	broad.mit.edu	37	chr8	61743013	61743013	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattcagaagaaatattacCgagccatccttgagaagaat	7	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61743013	A	A	61743013	2	1	9	1	0	0	0	0	0	0	0	1	3361	644	23	1		1	CHD7	8	61743013	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6375	61743013	84621009	9522	17673											
CHD7	55636	broad.mit.edu	37	chr8	61743122	61743122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaagtgctgcaatcatcCgtaccttatcaatggtaagg	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61743122	A	A	61743122	3	1	9	1	0	0	0	0	1	0	0	0	3361	652	23	1	3818	1	CHD7	8	61743122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109	61743122	84620900	9523	17674											
CHD7	55636	broad.mit.edu	37	chr8	61761698	61761698	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacaaatccctcttaattGgagtgttcaaacatggtaag	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61761698	T	T	61761698	4	4	9	1	0	0	0	0	0	1	0	0	3361	1349	47	2	5483	2	CHD7	8	61761698	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18576	61761698	84602324	9524	17675											
CLVS1	157807	broad.mit.edu	37	chr8	62370977	62370977	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacatgggaacttgggccCggacgttactcggtcccgac	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62370977	A	A	62370977	2	1	9	1	0	0	0	0	0	0	0	1	3603	643	23	1		1	CLVS1	8	62370977	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	609279	62370977	83993045	9525	17676											
ASPH	444	broad.mit.edu	37	chr8	62430618	62430618	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgcatcctgttgtctcGgggaacttttctagtaaggt	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62430618	T	T	62430618	2	4	9	1	0	0	0	0	0	0	0	1	1057	1103	39	1		1	ASPH	8	62430618	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	59641	62430618	83933404	9526	17677											
ASPH	444	broad.mit.edu	37	chr8	62465680	62465680	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccggattctattccttcCtgtagaaaggacagtgttag	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62465680	A	A	62465680	5	1	9	1	0	0	0	0	0	0	1	0	1057	695	24	2	764	2	ASPH	8	62465680	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	35062	62465680	83898342	9527	17678											
ASPH	444	broad.mit.edu	37	chr8	62475354	62475354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctatcaagaggtatccCacgccaaggtcattttttaa	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62475354	A	A	62475354	2	1	9	1	0	0	0	0	0	0	0	1	1057	581	21	2		2	ASPH	8	62475354	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9674	62475354	83888668	9528	17679											
ASPH	444	broad.mit.edu	37	chr8	62559432	62559432	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgttgcaagtcttctcCctcaactatgacaatgaaca	5	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62559432	A	A	62559432	4	1	9	1	0	0	0	0	0	1	0	0	1057	632	22	2	1872	2	ASPH	8	62559432	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84078	62559432	83804590	9529	17680											
ASPH	444	broad.mit.edu	37	chr8	62566107	62566107	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcacacctgggcgagactcGaggatgaggacaagcttacc	14	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62566107	T	T	62566107	1	4	9	0	1	0	0	0	0	0	0	0	1057	1073	37	3		3	ASPH	8	62566107	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6675	62566107	83797915	9530	17681											
ASPH	444	broad.mit.edu	37	chr8	62578155	62578155	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttgagctcttctttagtGagttctttaactttcagatt	6	7	5	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62578155	T	T	62578155	1	4	9	0	1	0	0	0	0	0	0	0	1057	1277	45	3		3	ASPH	8	62578155	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12048	62578155	83785867	9531	17682											
NKAIN3	286183	broad.mit.edu	37	chr8	63768768	63768768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttgtattaaatgtctGggtcttggttttcactggtt	10	4	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63768768	T	T	63768768	1	4	9	0	1	0	0	0	0	0	0	0	10532	1363	47	2		2	NKAIN3	8	63768768	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1190613	63768768	82595254	9532	17683											
CYP7B1	9420	broad.mit.edu	37	chr8	65508605	65508605	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagtatacaaagtaataaGgaacatttatgcatgattaa	6	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65508605	T	T	65508605	1	4	9	0	1	0	0	0	0	0	0	0	4230	1015	35	2		2	CYP7B1	8	65508605	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1739837	65508605	80855417	9533	17684											
CYP7B1	9420	broad.mit.edu	37	chr8	65508722	65508722	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaatattatacttgaagGgaacattttcatccagtgta	6	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65508722	T	T	65508722	1	4	9	0	1	0	0	0	0	0	0	0	4230	1247	43	2		2	CYP7B1	8	65508722	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	117	65508722	80855300	9534	17685											
CYP7B1	9420	broad.mit.edu	37	chr8	65508801	65508801	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatttgttagactgtgtcCatttccagcacaattttcta	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65508801	A	A	65508801	1	1	9	0	1	0	0	0	0	0	0	0	4230	609	21	2		2	CYP7B1	8	65508801	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	65508801	80855221	9535	17686											
CYP7B1	9420	broad.mit.edu	37	chr8	65517325	65517325	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcgcacacagtagtcccCggtctctgaactgagagtca	9	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65517325	A	A	65517325	3	1	9	1	0	0	0	0	1	0	0	0	4230	652	23	1	381	1	CYP7B1	8	65517325	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8524	65517325	80846697	9536	17687											
ARMC1	55156	broad.mit.edu	37	chr8	66516708	66516708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgggtgtgagccgaccCgggacaccgctttgtcctgt	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66516708	A	A	66516708	3	1	9	1	0	0	0	0	1	0	0	0	953	652	23	1	82	1	ARMC1	8	66516708	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	999383	66516708	79847314	9537	17688											
ARMC1	55156	broad.mit.edu	37	chr8	66539586	66539586	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgtaactggttaactacCgatagagcgtcaggctcttc	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66539586	A	A	66539586	2	1	9	1	0	0	0	0	0	0	0	1	953	639	23	1		1	ARMC1	8	66539586	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22878	66539586	79824436	9538	17689											
MTFR1	9650	broad.mit.edu	37	chr8	66582168	66582168	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacttgaaatgcaaatttGgggagactttgccatataaa	9	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66582168	T	T	66582168	1	4	9	0	1	0	0	0	0	0	0	0	10019	1363	47	2		2	MTFR1	8	66582168	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	42582	66582168	79781854	9539	17690											
MTFR1	9650	broad.mit.edu	37	chr8	66621214	66621214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgtttgtttctagtttGggccacacatgttgaagcca	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66621214	T	T	66621214	3	4	9	1	0	0	0	0	1	0	0	0	10019	1348	47	2	1077	2	MTFR1	8	66621214	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39046	66621214	79742808	9540	17691											
RRS1	23212	broad.mit.edu	37	chr8	67342485	67342485	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttctaactgtcggaccCgtctgtaaaccaaggactat	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67342485	A	A	67342485	1	1	9	0	1	0	0	0	0	0	0	0	13803	667	23	1		1	RRS1	8	67342485	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	721271	67342485	79021537	9541	17692											
ADHFE1	137872	broad.mit.edu	37	chr8	67356919	67356919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtagctatggattccCtagtgaagaatggcatcccc	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67356919	A	A	67356919	3	1	9	1	0	0	0	0	1	0	0	0	314	680	24	2	307	2	ADHFE1	8	67356919	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14434	67356919	79007103	9542	17693											
ADHFE1	137872	broad.mit.edu	37	chr8	67356975	67356975	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgagagtggaaccaacGgattcaaggtattcttgtat	11	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67356975	T	T	67356975	2	4	9	1	0	0	0	0	0	0	0	1	314	1103	39	1		1	ADHFE1	8	67356975	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	67356975	79007047	9543	17694											
ADHFE1	137872	broad.mit.edu	37	chr8	67361125	67361125	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcgagagccatcaaaccCacactgggactgattgatcc	8	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67361125	A	A	67361125	2	1	9	1	0	0	0	0	0	0	0	1	314	581	21	2		2	ADHFE1	8	67361125	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4150	67361125	79002897	9544	17695											
ADHFE1	137872	broad.mit.edu	37	chr8	67361171	67361171	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccctccacatgcctgccCgagtggtcgccaacagtggc	10	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67361171	A	A	67361171	2	1	9	1	0	0	0	0	0	0	0	1	314	644	23	1		1	ADHFE1	8	67361171	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	46	67361171	79002851	9545	17696											
ADHFE1	137872	broad.mit.edu	37	chr8	67366309	67366309	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagggctgtcagaaatccCgatgatcttgaagcaaggtc	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67366309	A	A	67366309	2	1	9	1	0	0	0	0	0	0	0	1	314	639	23	1		1	ADHFE1	8	67366309	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5138	67366309	78997713	9546	17697											
SGK3	23678	broad.mit.edu	37	chr8	67710903	67710903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaattaaaagaaagcaccCgagaaaacccaaaataagag	6	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67710903	A	A	67710903	1	1	9	0	1	0	0	0	0	0	0	0	14325	667	23	1		1	SGK3	8	67710903	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	344594	67710903	78653119	9547	17698											
CSPP1	79848	broad.mit.edu	37	chr8	68071358	68071358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaagagacaatttgattGgggaagaaacaaaggtaagt	13	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68071358	T	T	68071358	3	4	9	1	0	0	0	0	1	0	0	0	3996	1348	47	2	2696	2	CSPP1	8	68071358	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	360455	68071358	78292664	9548	17699											
CSPP1	79848	broad.mit.edu	37	chr8	68102893	68102893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcctcttaggggcttacGgtgagacatatcctgccatt	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68102893	T	T	68102893	3	4	9	1	0	0	0	0	1	0	0	0	3996	1116	39	1	3433	1	CSPP1	8	68102893	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31535	68102893	78261129	9549	17700											
CSPP1	79848	broad.mit.edu	37	chr8	68107603	68107603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacctgagccacgtgtccCttgcctcctgtagatgatga	10	12	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68107603	A	A	68107603	1	1	9	0	1	0	0	0	0	0	0	0	3996	696	24	2		2	CSPP1	8	68107603	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4710	68107603	78256419	9550	17701											
CSPP1	79848	broad.mit.edu	37	chr8	68107640	68107640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagagttcactggttgacCctgatgacatcatgaaacac	9	9	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68107640	A	A	68107640	3	1	9	1	0	0	0	0	1	0	0	0	3996	623	22	2	3705	2	CSPP1	8	68107640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	68107640	78256382	9551	17702											
CSPP1	79848	broad.mit.edu	37	chr8	68107673	68107673	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacacataggggatgacGgatcaaactctgtagcaact	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68107673	T	T	68107673	4	4	9	1	0	0	0	0	0	1	0	0	3996	1117	39	1	3738	1	CSPP1	8	68107673	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33	68107673	78256349	9552	17703											
ARFGEF1	10565	broad.mit.edu	37	chr8	68170030	68170030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaacataagctgtatcCgcactagcaaagagagtttg	9	9	0	1	rs112608791	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68170030	A	A	68170030	2	1	9	1	0	0	0	0	0	0	0	1	854	639	23	1		1	ARFGEF1	8	68170030	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62357	68170030	78193992	9553	17704											
ARFGEF1	10565	broad.mit.edu	37	chr8	68172082	68172082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcttgatgtaagaattGggcaatatcttcaggtgtgg	11	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68172082	T	T	68172082	3	4	9	1	0	0	0	0	1	0	0	0	854	1357	47	2	3446	2	ARFGEF1	8	68172082	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2052	68172082	78191940	9554	17705											
ARFGEF1	10565	broad.mit.edu	37	chr8	68255557	68255557	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcggcggctcgtccgaccCgcggctcccagcggctggag	17	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68255557	A	A	68255557	1	1	9	0	1	0	0	0	0	0	0	0	854	667	23	1		1	ARFGEF1	8	68255557	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	83475	68255557	78108465	9555	17706											
PREX2	80243	broad.mit.edu	37	chr8	68956724	68956724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaattccatcttaagacGgttgaagaacagcaaggcat	8	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68956724	T	T	68956724	3	4	9	1	0	0	0	0	1	0	0	0	12583	1116	39	1	872	1	PREX2	8	68956724	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	701167	68956724	77407298	9556	17707											
PREX2	80243	broad.mit.edu	37	chr8	68968191	68968191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaactgactacgttccCtaaatgctttcttggaaggt	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68968191	A	A	68968191	3	1	9	1	0	0	0	0	1	0	0	0	12583	681	24	2	1258	2	PREX2	8	68968191	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11467	68968191	77395831	9557	17708											
PREX2	80243	broad.mit.edu	37	chr8	69000006	69000006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacttggcttccagatccGgggatttggcccttctgttg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69000006	T	T	69000006	3	4	9	1	0	0	0	0	1	0	0	0	12583	1116	39	1	2149	1	PREX2	8	69000006	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31815	69000006	77364016	9558	17709											
SULF1	23213	broad.mit.edu	37	chr8	70513967	70513967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaccatggttaccatattGggcagtttggactggtcaag	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70513967	T	T	70513967	3	4	9	1	0	0	0	0	1	0	0	0	15488	1348	47	2	986	2	SULF1	8	70513967	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1513961	70513967	75850055	9559	17710											
SULF1	23213	broad.mit.edu	37	chr8	70515319	70515319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaggagaccagatgagaGggtgagaagagttgaaggcc	17	6	0	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70515319	T	T	70515319	1	4	9	0	1	0	0	0	0	0	0	0	15488	1015	35	2		2	SULF1	8	70515319	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1352	70515319	75848703	9560	17711											
NCOA2	10499	broad.mit.edu	37	chr8	71068574	71068574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggttccatgtgtagaccCagaaccaggcaagctacctg	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71068574	A	A	71068574	3	1	9	1	0	0	0	0	1	0	0	0	10324	594	21	2	2420	2	NCOA2	8	71068574	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	553255	71068574	75295448	9561	17712											
NCOA2	10499	broad.mit.edu	37	chr8	71075715	71075715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttaccttggagatcctggcGagtagtaaaactttctgatg	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71075715	T	T	71075715	3	4	9	1	0	0	0	0	1	0	0	0	10324	1058	37	3	3641	3	NCOA2	8	71075715	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7141	71075715	75288307	9562	17713											
NCOA2	10499	broad.mit.edu	37	chr8	71078984	71078984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgccagaccaagatccccCatttactgagcaaggcaaaa	7	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71078984	A	A	71078984	3	1	9	1	0	0	0	0	1	0	0	0	10324	594	21	2	3915	2	NCOA2	8	71078984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3269	71078984	75285038	9563	17714											
LACTB2	51110	broad.mit.edu	37	chr8	71573930	71573930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaattattctccaaacacGgctttcctcaatgagcttaa	4	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71573930	T	T	71573930	1	4	9	0	1	0	0	0	0	0	0	0	8670	1131	39	1		1	LACTB2	8	71573930	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	494946	71573930	74790092	9564	17715											
EYA1	2138	broad.mit.edu	37	chr8	72184009	72184009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacctcaagatcagaatctGggggaggtgaaggattattg	14	5	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72184009	T	T	72184009	3	4	9	1	0	0	0	0	1	0	0	0	5371	1348	47	2	864	2	EYA1	8	72184009	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	610079	72184009	74180013	9565	17716											
EYA1	2138	broad.mit.edu	37	chr8	72184042	72184042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattattgtttcttcggcccCgtccacgtgatttcccatct	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72184042	A	A	72184042	3	1	9	1	0	0	0	0	1	0	0	0	5371	652	23	1	897	1	EYA1	8	72184042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	72184042	74179980	9566	17717											
MSC	9242	broad.mit.edu	37	chr8	72754864	72754864	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaaacactcgcatttaacGaataatcccatcaagtgagt	5	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72754864	T	T	72754864	1	4	9	0	1	0	0	0	0	0	0	0	9962	1073	37	3		3	MSC	8	72754864	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	570822	72754864	73609158	9567	17718											
MSC	9242	broad.mit.edu	37	chr8	72754929	72754929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatagtctgttggctgcGgaaacttctttggtgtcaga	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72754929	T	T	72754929	2	4	9	1	0	0	0	0	0	0	0	1	9962	1103	39	1		1	MSC	8	72754929	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	65	72754929	73609093	9568	17719											
KCNB2	9312	broad.mit.edu	37	chr8	73848342	73848342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taccatggagtaccttttgcGattcttatcctcaccaaata	5	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73848342	T	T	73848342	3	4	9	1	0	0	0	0	1	0	0	0	8083	1058	37	3	758	3	KCNB2	8	73848342	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1093413	73848342	72515680	9569	17720											
C8orf84	157869	broad.mit.edu	37	chr8	73993266	73993266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagtaccataggtgtgccCgcagtcctggccctgcgggg	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73993266	A	A	73993266	3	1	9	1	0	0	0	0	1	0	0	0	2466	652	23	1	413	1	C8orf84	8	73993266	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144924	73993266	72370756	9570	17721											
TMEM70	54968	broad.mit.edu	37	chr8	74891084	74891084	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatactggcaatatggccCgagcagtgtttggtaagtaa	11	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74891084	A	A	74891084	2	1	9	1	0	0	0	0	0	0	0	1	16322	644	23	1		1	TMEM70	8	74891084	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	897818	74891084	71472938	9571	17722											
JPH1	56704	broad.mit.edu	37	chr8	75149493	75149493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaaagaatggccaaccCgatattcaacagcatgacaa	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75149493	A	A	75149493	3	1	9	1	0	0	0	0	1	0	0	0	8030	652	23	1	38	1	JPH1	8	75149493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	258409	75149493	71214529	9572	17723											
PI15	51050	broad.mit.edu	37	chr8	75737717	75737717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattatcataatcaagttcGgggcaaagtgttcccaccgg	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75737717	T	T	75737717	3	4	9	1	0	0	0	0	1	0	0	0	11963	1116	39	1	235	1	PI15	8	75737717	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	588224	75737717	70626305	9573	17724											
ZFHX4	79776	broad.mit.edu	37	chr8	77616633	77616633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaccactgccctaatgccCgccttcctgtcctgaaggat	7	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77616633	A	A	77616633	3	1	9	1	0	0	0	0	1	0	0	0	17761	652	23	1	312	1	ZFHX4	8	77616633	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1878916	77616633	68747389	9574	17725											
ZFHX4	79776	broad.mit.edu	37	chr8	77763160	77763160	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaaagcatggcaggtctcGaggattcaaaggctaatgtg	12	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77763160	T	T	77763160	4	4	9	1	0	0	0	0	0	1	0	0	17761	1059	37	3	4037	3	ZFHX4	8	77763160	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	146527	77763160	68600862	9575	17726											
ZFHX4	79776	broad.mit.edu	37	chr8	77775728	77775728	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagcttcctttataggcGgacagttcttgccatacttt	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77775728	T	T	77775728	4	4	9	1	0	0	0	0	0	1	0	0	17761	1117	39	1	9816	1	ZFHX4	8	77775728	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12568	77775728	68588294	9576	17727											
FAM164A	51101	broad.mit.edu	37	chr8	79629660	79629660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaattctgccatgagtgtGggactaaataccctgtagaa	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79629660	T	T	79629660	3	4	9	1	0	0	0	0	1	0	0	0	5523	1348	47	2	944	2	FAM164A	8	79629660	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1853932	79629660	66734362	9577	17728											
IL7	3574	broad.mit.edu	37	chr8	79710481	79710481	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagaatgagctaaatgttaTatcgtattgcatttgattgt	8	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79710481	C	C	79710481	1	2	9	0	1	0	0	0	0	0	0	0	7774	1421	49	5		5	IL7	8	79710481	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	80821	79710481	66653541	9578	17729											
HEY1	23462	broad.mit.edu	37	chr8	80677892	80677892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccagtcgaactcgaagcGggtcagaggcatctagtcct	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80677892	T	T	80677892	3	4	9	1	0	0	0	0	1	0	0	0	7145	1116	39	1	472	1	HEY1	8	80677892	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	967411	80677892	65686130	9579	17730											
HEY1	23462	broad.mit.edu	37	chr8	80679461	80679461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagagactcactcctctcCgtctttttctggccaaaatc	5	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679461	A	A	80679461	3	1	9	1	0	0	0	0	1	0	0	0	7145	652	23	1	784	1	HEY1	8	80679461	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1569	80679461	65684561	9580	17731											
TPD52	7163	broad.mit.edu	37	chr8	80950387	80950387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttttctggaagaggctcCgtggtggtggcactagcatt	14	8	2	1	rs142266852		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80950387	A	A	80950387	2	1	9	1	0	0	0	0	0	0	0	1	16521	639	23	1		1	TPD52	8	80950387	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	270926	80950387	65413635	9581	17732											
ZBTB10	65986	broad.mit.edu	37	chr8	81412237	81412237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggtctgtcttcatcacGggatcaaaaaattgccagtt	9	8	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81412237	T	T	81412237	3	4	9	1	0	0	0	0	1	0	0	0	17649	1116	39	1	1487	1	ZBTB10	8	81412237	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	461850	81412237	64951785	9582	17733											
ZNF704	619279	broad.mit.edu	37	chr8	81577128	81577128	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtcatcaacttagtctcCgttttggcacaaggagtttc	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81577128	A	A	81577128	2	1	9	1	0	0	0	0	0	0	0	1	18234	639	23	1		1	ZNF704	8	81577128	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	164891	81577128	64786894	9583	17734											
ZNF704	619279	broad.mit.edu	37	chr8	81733676	81733676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaaggagacagatggagcGagtgttttctttttcatggt	12	6	3	2	rs76083340		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81733676	T	T	81733676	3	4	9	1	0	0	0	0	1	0	0	0	18234	1058	37	3	1116	3	ZNF704	8	81733676	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	156548	81733676	64630346	9584	17735											
ZNF704	619279	broad.mit.edu	37	chr8	81733834	81733834	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgtgaaggtcatttccCgcttaatgctccccacctgt	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81733834	A	A	81733834	1	1	9	0	1	0	0	0	0	0	0	0	18234	667	23	1		1	ZNF704	8	81733834	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	158	81733834	64630188	9585	17736											
PAG1	55824	broad.mit.edu	37	chr8	81889154	81889154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagatctaggagacaaaGggagagttgaataaacttcc	12	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81889154	T	T	81889154	1	4	9	0	1	0	0	0	0	0	0	0	11482	1015	35	2		2	PAG1	8	81889154	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	155320	81889154	64474868	9586	17737											
PMP2	5375	broad.mit.edu	37	chr8	82357159	82357159	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtatagttataatatctcCtttcttgctgatgatcacag	6	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82357159	A	A	82357159	4	1	9	1	0	0	0	0	0	1	0	0	12233	690	24	2	271	2	PMP2	8	82357159	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	468005	82357159	64006863	9587	17738											
IMPA1	3612	broad.mit.edu	37	chr8	82572827	82572827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcccagcagtgaattccCatttcataatatgcatctgc	5	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82572827	A	A	82572827	3	1	9	1	0	0	0	0	1	0	0	0	7792	595	21	2	199	2	IMPA1	8	82572827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	215668	82572827	63791195	9588	17739											
PSKH2	85481	broad.mit.edu	37	chr8	87060837	87060837	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctctgcatgaggtttcGggatatggccctctggagat	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87060837	T	T	87060837	2	4	9	1	0	0	0	0	0	0	0	1	12771	1124	39	1		1	PSKH2	8	87060837	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4488010	87060837	59303185	9589	17740											
SLC7A13	157724	broad.mit.edu	37	chr8	87230042	87230042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaaagctcgatcagccCatgtgatagctacagcatct	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87230042	A	A	87230042	3	1	9	1	0	0	0	0	1	0	0	0	14809	595	21	2	584	2	SLC7A13	8	87230042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	169205	87230042	59133980	9590	17741											
WWP1	11059	broad.mit.edu	37	chr8	87386275	87386275	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggttttagctgaattttGggacatggccactgcttcac	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87386275	T	T	87386275	1	4	9	0	1	0	0	0	0	0	0	0	17542	1363	47	2		2	WWP1	8	87386275	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	156233	87386275	58977747	9591	17742											
WWP1	11059	broad.mit.edu	37	chr8	87443893	87443893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgggaaattagatatactCgtgaaggtgtaaggtacttt	12	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87443893	A	A	87443893	3	1	9	1	0	0	0	0	1	0	0	0	17542	884	31	3	1568	3	WWP1	8	87443893	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57618	87443893	58920129	9592	17743											
WWP1	11059	broad.mit.edu	37	chr8	87447742	87447742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaagcttgctcacttcCgttatttgtgccaggtacta	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87447742	A	A	87447742	3	1	9	1	0	0	0	0	1	0	0	0	17542	652	23	1	1713	1	WWP1	8	87447742	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3849	87447742	58916280	9593	17744											
FAM82B	51115	broad.mit.edu	37	chr8	87516921	87516921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttatcggggctatcttGgtctttgtggcctttgaaat	11	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87516921	T	T	87516921	1	4	9	0	1	0	0	0	0	0	0	0	5685	1363	47	2		2	FAM82B	8	87516921	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	69179	87516921	58847101	9594	17745											
FAM82B	51115	broad.mit.edu	37	chr8	87519300	87519300	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaaatacgacaaagctgaGagtaaaaggcctcttttgaa	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87519300	T	T	87519300	2	4	9	1	0	0	0	0	0	0	0	1	5685	929	33	3		3	FAM82B	8	87519300	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2379	87519300	58844722	9595	17746											
CPNE3	8895	broad.mit.edu	37	chr8	87556970	87556970	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattatatttaatttcaggtGgagtgttatgattatgacaa	8	2	1	2	rs149660315	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87556970	T	T	87556970	2	4	9	1	0	0	0	0	0	0	0	1	3845	1335	47	2		2	CPNE3	8	87556970	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37670	87556970	58807052	9596	17747											
CPNE3	8895	broad.mit.edu	37	chr8	87558913	87558913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgaaacagtgtgaggtcCgttggccttggctacttatt	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87558913	A	A	87558913	1	1	9	0	1	0	0	0	0	0	0	0	3845	667	23	1		1	CPNE3	8	87558913	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1943	87558913	58805109	9597	17748											
CNGB3	54714	broad.mit.edu	37	chr8	87591428	87591428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaaaagattggcaaaccCgtgggccaccacattggcag	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87591428	A	A	87591428	3	1	9	1	0	0	0	0	1	0	0	0	3633	652	23	1	607	1	CNGB3	8	87591428	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32515	87591428	58772594	9598	17749											
CNGB3	54714	broad.mit.edu	37	chr8	87623852	87623852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaggcaaatagagaacGgatttcaatcttagcaacat	7	9	3	1	rs35903042	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87623852	T	T	87623852	2	4	9	1	0	0	0	0	0	0	0	1	3633	1103	39	1		1	CNGB3	8	87623852	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32424	87623852	58740170	9599	17750											
CNGB3	54714	broad.mit.edu	37	chr8	87680295	87680295	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaattcgctttaagtactCtgttaaaggcatctttttga	6	6	2	1	rs114305748	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87680295	A	A	87680295	4	1	9	1	0	0	0	0	0	1	0	0	3633	922	32	3	1890	3	CNGB3	8	87680295	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56443	87680295	58683727	9600	17751											
CNGB3	54714	broad.mit.edu	37	chr8	87683191	87683191	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtttgtgggctggcttcGggtgaggagagatctccctc	15	10	1	2	rs151230930		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87683191	T	T	87683191	2	4	9	1	0	0	0	0	0	0	0	1	3633	1103	39	1		1	CNGB3	8	87683191	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2896	87683191	58680831	9601	17752											
MMP16	4325	broad.mit.edu	37	chr8	89053879	89053879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgtctacatcatctggtGggctgtgtccttctttaact	8	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89053879	T	T	89053879	3	4	9	1	0	0	0	0	1	0	0	0	9748	1348	47	2	193	2	MMP16	8	89053879	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1370688	89053879	57310143	9602	17753											
MMP16	4325	broad.mit.edu	37	chr8	89081746	89081746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatagatagagtgtctccCttcactgcaaaggaaaggtt	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89081746	A	A	89081746	1	1	9	0	1	0	0	0	0	0	0	0	9748	680	24	2		2	MMP16	8	89081746	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	27867	89081746	57282276	9603	17754											
MMP16	4325	broad.mit.edu	37	chr8	89198811	89198811	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcaggtacaccgcatcGgggcttcttcatccagctgc	11	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89198811	T	T	89198811	2	4	9	1	0	0	0	0	0	0	0	1	9748	1124	39	1		1	MMP16	8	89198811	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	117065	89198811	57165211	9604	17755											
OSGIN2	734	broad.mit.edu	37	chr8	90933279	90933279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttacttcttgttttttgacGgtacatttttttttttaaac	5	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90933279	T	T	90933279	1	4	9	0	1	0	0	0	0	0	0	0	11384	1131	39	1		1	OSGIN2	8	90933279	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1734468	90933279	55430743	9605	17756											
NBN	4683	broad.mit.edu	37	chr8	90993658	90993658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccccgacttcaaagttcGggaaaagccattctgcattt	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90993658	T	T	90993658	2	4	9	1	0	0	0	0	0	0	0	1	10285	1124	39	1		1	NBN	8	90993658	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60379	90993658	55370364	9606	17757											
DECR1	1666	broad.mit.edu	37	chr8	91031161	91031161	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatgttttgaaagctacCgcagaacaaatttcttctca	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91031161	A	A	91031161	2	1	9	1	0	0	0	0	0	0	0	1	4415	639	23	1		1	DECR1	8	91031161	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37503	91031161	55332861	9607	17758											
CALB1	793	broad.mit.edu	37	chr8	91072437	91072437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaataagagcaagatcCgttcggtacagcttccctcc	9	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91072437	A	A	91072437	2	1	9	1	0	0	0	0	0	0	0	1	2599	639	23	1		1	CALB1	8	91072437	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41276	91072437	55291585	9608	17759											
CALB1	793	broad.mit.edu	37	chr8	91072919	91072919	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattttcatctatgtatcCattgccgtcctgggggagga	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91072919	A	A	91072919	4	1	9	1	0	0	0	0	0	1	0	0	2599	603	21	2	183	2	CALB1	8	91072919	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	482	91072919	55291103	9609	17760											
CALB1	793	broad.mit.edu	37	chr8	91075317	91075317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagaaaggaaaaagtaaCaaacttttacctgatcatac	5	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91075317	A	A	91075317	1	1	9	0	1	0	0	0	0	0	0	0	2599	493	17	3		3	CALB1	8	91075317	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2398	91075317	55288705	9610	17761											
TMEM55A	55529	broad.mit.edu	37	chr8	92030736	92030736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccaaggttaattatcCgtctactgtgaaaagagaaa	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92030736	A	A	92030736	3	1	9	1	0	0	0	0	1	0	0	0	16304	652	23	1	421	1	TMEM55A	8	92030736	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	955419	92030736	54333286	9611	17762											
SLC26A7	115111	broad.mit.edu	37	chr8	92364120	92364120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactggctgcccatggtacGgtagtgctttttcactatct	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92364120	T	T	92364120	1	4	9	0	1	0	0	0	0	0	0	0	14636	1131	39	1		1	SLC26A7	8	92364120	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	333384	92364120	53999902	9612	17763											
SLC26A7	115111	broad.mit.edu	37	chr8	92365183	92365183	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaatgctaatacagttcCgagatttaaaaaaatattgg	9	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92365183	A	A	92365183	2	1	9	1	0	0	0	0	0	0	0	1	14636	644	23	1		1	SLC26A7	8	92365183	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1063	92365183	53998839	9613	17764											
RUNX1T1	862	broad.mit.edu	37	chr8	92972688	92972688	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaatgagccacagtatcGggctgtgttacagccactgc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92972688	T	T	92972688	2	4	9	1	0	0	0	0	0	0	0	1	13858	1124	39	1		1	RUNX1T1	8	92972688	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	607505	92972688	53391334	9614	17765											
RUNX1T1	862	broad.mit.edu	37	chr8	92988192	92988192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcctgtgaaggaattccCgatgcgcgtctatgaaaagg	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92988192	A	A	92988192	3	1	9	1	0	0	0	0	1	0	0	0	13858	652	23	1	537	1	RUNX1T1	8	92988192	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15504	92988192	53375830	9615	17766											
RUNX1T1	862	broad.mit.edu	37	chr8	92998377	92998377	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactgggtctgggttgacGggactctgctgcctagagtg	16	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92998377	T	T	92998377	2	4	9	1	0	0	0	0	0	0	0	1	13858	1103	39	1		1	RUNX1T1	8	92998377	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10185	92998377	53365645	9616	17767											
RUNX1T1	862	broad.mit.edu	37	chr8	92998433	92998433	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccacctttttttaagtcctCggcgtcactgtaccgccgga	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92998433	A	A	92998433	4	1	9	1	0	0	0	0	0	1	0	0	13858	893	31	3	632	3	RUNX1T1	8	92998433	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	92998433	53365589	9617	17768											
RUNX1T1	862	broad.mit.edu	37	chr8	93003933	93003933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggagtccctgtagtggtGggcaatggccatatcatcca	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93003933	T	T	93003933	3	4	9	1	0	0	0	0	1	0	0	0	13858	1348	47	2	913	2	RUNX1T1	8	93003933	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5500	93003933	53360089	9618	17769											
RUNX1T1	862	broad.mit.edu	37	chr8	93074798	93074798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccttgaatccagcgtacCacacagaaagtggctgtctc	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93074798	A	A	93074798	1	1	9	0	1	0	0	0	0	0	0	0	13858	609	21	2		2	RUNX1T1	8	93074798	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	70865	93074798	53289224	9619	17770											
RBM12B	389677	broad.mit.edu	37	chr8	94745895	94745895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaccacaatttatttttGgatcaggcataaatctcccc	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94745895	T	T	94745895	3	4	9	1	0	0	0	0	1	0	0	0	13222	1348	47	2	265	2	RBM12B	8	94745895	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1671097	94745895	51618127	9620	17771											
RBM12B	389677	broad.mit.edu	37	chr8	94747622	94747622	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttatgtaaactcagagcGgtattatagtctttcagagt	9	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94747622	T	T	94747622	2	4	9	1	0	0	0	0	0	0	0	1	13222	1103	39	1		1	RBM12B	8	94747622	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1727	94747622	51616400	9621	17772											
CDH17	1015	broad.mit.edu	37	chr8	95143209	95143209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgcctggtagacagtcGggcatgagtacctgccagga	15	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95143209	T	T	95143209	2	4	9	1	0	0	0	0	0	0	0	1	3132	1124	39	1		1	CDH17	8	95143209	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	395587	95143209	51220813	9622	17773											
CDH17	1015	broad.mit.edu	37	chr8	95164072	95164072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgaccacgcagccaggcCtgcccagcactgttgccctt	11	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95164072	A	A	95164072	1	1	9	0	1	0	0	0	0	0	0	0	3132	696	24	2		2	CDH17	8	95164072	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20863	95164072	51199950	9623	17774											
CDH17	1015	broad.mit.edu	37	chr8	95183133	95183133	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcacgtaaatatctccttcCtggtcaattgaaaatgggaa	8	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95183133	G	G	95183133	3	3	9	1	0	0	0	0	1	0	0	0	3132	680	24	4	1678	4	CDH17	8	95183133	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19061	95183133	51180889	9624	17775											
CDH17	1015	broad.mit.edu	37	chr8	95189879	95189879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatacagaagtccctccCgttctatcacaaatatgttg	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95189879	A	A	95189879	3	1	9	1	0	0	0	0	1	0	0	0	3132	652	23	1	2337	1	CDH17	8	95189879	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6746	95189879	51174143	9625	17776											
GEM	2669	broad.mit.edu	37	chr8	95264334	95264334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtctgccgggccctgcGgagctggattcgcagctcag	14	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95264334	T	T	95264334	3	4	9	1	0	0	0	0	1	0	0	0	6393	1116	39	1	372	1	GEM	8	95264334	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74455	95264334	51099688	9626	17777											
RAD54B	25788	broad.mit.edu	37	chr8	95405993	95405993	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaagcagaaggttctctcGataaaatgatgggttcttca	10	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95405993	T	T	95405993	4	4	9	1	0	0	0	0	0	1	0	0	13100	1059	37	3	1264	3	RAD54B	8	95405993	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	141659	95405993	50958029	9627	17778											
KIAA1429	25962	broad.mit.edu	37	chr8	95503984	95503984	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagcaacaaagtcatcCacatgcatagatggtggtct	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95503984	A	A	95503984	2	1	9	1	0	0	0	0	0	0	0	1	8301	581	21	2		2	KIAA1429	8	95503984	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	97991	95503984	50860038	9628	17779											
KIAA1429	25962	broad.mit.edu	37	chr8	95522134	95522134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaagcaacctggtggtttGgctagtatactgtttttctt	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95522134	T	T	95522134	3	4	9	1	0	0	0	0	1	0	0	0	8301	1357	47	2	1817	2	KIAA1429	8	95522134	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18150	95522134	50841888	9629	17780											
KIAA1429	25962	broad.mit.edu	37	chr8	95523807	95523807	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccattgaaatagtagtaactCtgtgaagggtagtccccatg	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95523807	A	A	95523807	3	1	9	1	0	0	0	0	1	0	0	0	8301	913	32	3	2544	3	KIAA1429	8	95523807	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1673	95523807	50840215	9630	17781											
KIAA1429	25962	broad.mit.edu	37	chr8	95556086	95556086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtctggcagactgctatGggctcttactcctgggggta	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95556086	T	T	95556086	3	4	9	1	0	0	0	0	1	0	0	0	8301	1348	47	2	5436	2	KIAA1429	8	95556086	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32279	95556086	50807936	9631	17782											
KIAA1429	25962	broad.mit.edu	37	chr8	95556100	95556100	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctatgggctcttactcctGggggtatgactcggacttca	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95556100	T	T	95556100	3	4	9	1	0	0	0	0	1	0	0	0	8301	1348	47	2	5450	2	KIAA1429	8	95556100	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	95556100	50807922	9632	17783											
KIAA1429	25962	broad.mit.edu	37	chr8	95565623	95565623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagccttacctcagcgctcGggtgtttaaaagtatctaaa	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95565623	T	T	95565623	3	4	9	1	0	0	0	0	1	0	0	0	8301	1116	39	1	5535	1	KIAA1429	8	95565623	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9523	95565623	50798399	9633	17784											
ESRP1	54845	broad.mit.edu	37	chr8	95677234	95677234	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgtaagtgaggagcacCgagacctagcactacagagg	14	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95677234	A	A	95677234	2	1	9	1	0	0	0	0	0	0	0	1	5300	644	23	1		1	ESRP1	8	95677234	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	111611	95677234	50686788	9634	17785											
DPY19L4	286148	broad.mit.edu	37	chr8	95750607	95750607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttaggagcttgaacGggaaatcacgtttcagggtg	12	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95750607	T	T	95750607	3	4	9	1	0	0	0	0	1	0	0	0	4783	1116	39	1	277	1	DPY19L4	8	95750607	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73373	95750607	50613415	9635	17786											
DPY19L4	286148	broad.mit.edu	37	chr8	95789954	95789954	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttggtgtatgttctccCgaactttggatgacactttt	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95789954	A	A	95789954	2	1	9	1	0	0	0	0	0	0	0	1	4783	639	23	1		1	DPY19L4	8	95789954	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39347	95789954	50574068	9636	17787											
INTS8	55656	broad.mit.edu	37	chr8	95853776	95853776	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtttacctgtccagttcCgacagtcagtcctaagagaa	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95853776	A	A	95853776	2	1	9	1	0	0	0	0	0	0	0	1	7854	644	23	1		1	INTS8	8	95853776	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63822	95853776	50510246	9637	17788											
INTS8	55656	broad.mit.edu	37	chr8	95885721	95885721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggtgaattgttttcgtGggctggctggtttcttgcct	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95885721	T	T	95885721	1	4	9	0	1	0	0	0	0	0	0	0	7854	1363	47	2		2	INTS8	8	95885721	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31945	95885721	50478301	9638	17789											
C8orf37	157657	broad.mit.edu	37	chr8	96281251	96281251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaacagtccacccctccCgcccggttaacctgagcgtc	8	19	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96281251	A	A	96281251	1	1	9	0	1	0	0	0	0	0	0	0	2449	667	23	1		1	C8orf37	8	96281251	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	395530	96281251	50082771	9639	17790											
C8orf37	157657	broad.mit.edu	37	chr8	96281347	96281347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctgctcgaccatacccCgtcttagaaggtcaggtgtg	13	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96281347	A	A	96281347	3	1	9	1	0	0	0	0	1	0	0	0	2449	652	23	1	576	1	C8orf37	8	96281347	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	96	96281347	50082675	9640	17791											
UQCRB	7381	broad.mit.edu	37	chr8	97243411	97243411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacgtactgatatatccCaaacactcaacaggtcttca	4	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97243411	A	A	97243411	1	1	9	0	1	0	0	0	0	0	0	0	17144	609	21	2		2	UQCRB	8	97243411	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	962064	97243411	49120611	9641	17792											
PTDSS1	9791	broad.mit.edu	37	chr8	97316389	97316389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagtagctggagtgtacCttttcatgatcatctggcag	12	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97316389	A	A	97316389	3	1	9	1	0	0	0	0	1	0	0	0	12842	681	24	2	900	2	PTDSS1	8	97316389	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72978	97316389	49047633	9642	17793											
PTDSS1	9791	broad.mit.edu	37	chr8	97316427	97316427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtattttttcagatgccCagaagttgggaggaaaacaa	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97316427	A	A	97316427	1	1	9	0	1	0	0	0	0	0	0	0	12842	609	21	2		2	PTDSS1	8	97316427	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	97316427	49047595	9643	17794											
PTDSS1	9791	broad.mit.edu	37	chr8	97318739	97318739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagtcatccattaagttGgggtagaattctctttattg	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97318739	T	T	97318739	3	4	9	1	0	0	0	0	1	0	0	0	12842	1357	47	2	992	2	PTDSS1	8	97318739	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2312	97318739	49045283	9644	17795											
PTDSS1	9791	broad.mit.edu	37	chr8	97342555	97342555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtttaaaataatcaccCcgggctcggcaaattcgctc	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97342555	A	A	97342555	1	1	9	0	1	0	0	0	0	0	0	0	12842	638	22	2		2	PTDSS1	8	97342555	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23816	97342555	49021467	9645	17796											
PTDSS1	9791	broad.mit.edu	37	chr8	97345801	97345801	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaaagaaatgaaaaaccCtggttaatcaaagatgttcc	8	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97345801	A	A	97345801	1	1	9	0	1	0	0	0	0	0	0	0	12842	696	24	2		2	PTDSS1	8	97345801	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3246	97345801	49018221	9646	17797											
PGCP	10404	broad.mit.edu	37	chr8	97892175	97892175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggggcaaagacctaccCagatactgattccttcaaca	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97892175	A	A	97892175	3	1	9	1	0	0	0	0	1	0	0	0	11881	594	21	2	801	2	PGCP	8	97892175	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	546374	97892175	48471847	9647	17798											
TSPYL5	85453	broad.mit.edu	37	chr8	98288992	98288992	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccacaatcttgtcagactCaatggagctgtggtttgaaa	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98288992	A	A	98288992	4	1	9	1	0	0	0	0	0	1	0	0	16787	835	29	3	176	3	TSPYL5	8	98288992	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	396817	98288992	48075030	9648	17799											
MTDH	92140	broad.mit.edu	37	chr8	98703286	98703286	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggagaagtggaactcCgtttcacctgcttctgcagg	14	9	2	2	rs142598802		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98703286	A	A	98703286	2	1	9	1	0	0	0	0	0	0	0	1	10011	639	23	1		1	MTDH	8	98703286	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	414294	98703286	47660736	9649	17800											
MTDH	92140	broad.mit.edu	37	chr8	98731337	98731337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaatacctctaaaaccCgtccaaaacaggaaaaagct	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98731337	A	A	98731337	3	1	9	1	0	0	0	0	1	0	0	0	10011	652	23	1	1479	1	MTDH	8	98731337	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28051	98731337	47632685	9650	17801											
MATN2	4147	broad.mit.edu	37	chr8	99030221	99030221	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttgctctcctgtcttcaGggaaagatgtctgccaagct	9	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99030221	T	T	99030221	5	4	9	1	0	0	0	0	0	0	1	0	9426	1014	35	2	1738	2	MATN2	8	99030221	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	298884	99030221	47333801	9651	17802											
RPL30	6156	broad.mit.edu	37	chr8	99057180	99057180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcgattacctcaaagctGggcagttgttagcgagaatg	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99057180	T	T	99057180	3	4	9	1	0	0	0	0	1	0	0	0	13691	1348	47	2	201	2	RPL30	8	99057180	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26959	99057180	47306842	9652	17803											
RPL30	6156	broad.mit.edu	37	chr8	99057250	99057250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagagtctgcttgtaccCcaggacgtacttcccacttt	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99057250	A	A	99057250	3	1	9	1	0	0	0	0	1	0	0	0	13691	623	22	2	271	2	RPL30	8	99057250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	99057250	47306772	9653	17804											
POP1	10940	broad.mit.edu	37	chr8	99148800	99148800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacttccaacaccatccCaagaaaaaagccaaactgaa	3	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99148800	A	A	99148800	3	1	9	1	0	0	0	0	1	0	0	0	12346	595	21	2	1128	2	POP1	8	99148800	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	91550	99148800	47215222	9654	17805											
POP1	10940	broad.mit.edu	37	chr8	99153137	99153137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaagttccaaaaacacccCaggttttccttactatttcg	5	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99153137	A	A	99153137	1	1	9	0	1	0	0	0	0	0	0	0	12346	609	21	2		2	POP1	8	99153137	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4337	99153137	47210885	9655	17806											
POP1	10940	broad.mit.edu	37	chr8	99170454	99170454	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtgctactgaggcctccCgcctctctgcagtatcgatt	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99170454	A	A	99170454	2	1	9	1	0	0	0	0	0	0	0	1	12346	639	23	1		1	POP1	8	99170454	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17317	99170454	47193568	9656	17807											
NIPAL2	79815	broad.mit.edu	37	chr8	99205575	99205575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggccatggaaatcaggtGggtttagtctggagattcac	14	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99205575	T	T	99205575	1	4	9	0	1	0	0	0	0	0	0	0	10520	1363	47	2		2	NIPAL2	8	99205575	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35121	99205575	47158447	9657	17808											
KCNS2	3788	broad.mit.edu	37	chr8	99440407	99440407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactacgacgacgtccagcGggagttctacttcgaccgca	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99440407	T	T	99440407	3	4	9	1	0	0	0	0	1	0	0	0	8159	1116	39	1	202	1	KCNS2	8	99440407	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	234832	99440407	46923615	9658	17809											
OSR2	116039	broad.mit.edu	37	chr8	99961523	99961523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcacaaggaccggcccCgttttgactttgccaatttg	9	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99961523	A	A	99961523	3	1	9	1	0	0	0	0	1	0	0	0	11388	652	23	1	345	1	OSR2	8	99961523	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	521116	99961523	46402499	9659	17810											
VPS13B	157680	broad.mit.edu	37	chr8	100115370	100115370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtaaatatggagaatacCgtatatttttccataattga	7	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100115370	A	A	100115370	1	1	9	0	1	0	0	0	0	0	0	0	17317	667	23	1		1	VPS13B	8	100115370	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	153847	100115370	46248652	9660	17811											
VPS13B	157680	broad.mit.edu	37	chr8	100396484	100396484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagcagttaatattgaccCaatcttatatacgtggctca	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100396484	A	A	100396484	3	1	9	1	0	0	0	0	1	0	0	0	17317	594	21	2	3070	2	VPS13B	8	100396484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	281114	100396484	45967538	9661	17812											
VPS13B	157680	broad.mit.edu	37	chr8	100479781	100479781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaaaaactgcttgctacGggacctgatacacgacattc	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100479781	T	T	100479781	2	4	9	1	0	0	0	0	0	0	0	1	17317	1103	39	1		1	VPS13B	8	100479781	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83297	100479781	45884241	9662	17813											
VPS13B	157680	broad.mit.edu	37	chr8	100493781	100493781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttagtggattgaaactGgaagttgaaagacttgtttt	10	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100493781	T	T	100493781	1	4	9	0	1	0	0	0	0	0	0	0	17317	1363	47	2		2	VPS13B	8	100493781	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14000	100493781	45870241	9663	17814											
VPS13B	157680	broad.mit.edu	37	chr8	100523416	100523416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgtaacaaaaaatgtcCgccacaagttaacatcaaga	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100523416	A	A	100523416	3	1	9	1	0	0	0	0	1	0	0	0	17317	652	23	1	4688	1	VPS13B	8	100523416	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29635	100523416	45840606	9664	17815											
VPS13B	157680	broad.mit.edu	37	chr8	100654404	100654404	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcagatgttgctaagccCaaccaggcatgtatttccac	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100654404	A	A	100654404	2	1	9	1	0	0	0	0	0	0	0	1	17317	581	21	2		2	VPS13B	8	100654404	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	130988	100654404	45709618	9665	17816											
VPS13B	157680	broad.mit.edu	37	chr8	100654624	100654624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtactttattgtgtccCagccttccttgcttctgagt	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100654624	A	A	100654624	3	1	9	1	0	0	0	0	1	0	0	0	17317	595	21	2	6205	2	VPS13B	8	100654624	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	220	100654624	45709398	9666	17817											
VPS13B	157680	broad.mit.edu	37	chr8	100791128	100791128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacccttcagcatcttcGggcagatggcagtttccagc	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100791128	T	T	100791128	3	4	9	1	0	0	0	0	1	0	0	0	17317	1116	39	1	8079	1	VPS13B	8	100791128	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	136504	100791128	45572894	9667	17818											
VPS13B	157680	broad.mit.edu	37	chr8	100791178	100791178	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagctgcttgactgcacCgtgatagttgattctgtatt	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100791178	A	A	100791178	2	1	9	1	0	0	0	0	0	0	0	1	17317	639	23	1		1	VPS13B	8	100791178	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	100791178	45572844	9668	17819											
VPS13B	157680	broad.mit.edu	37	chr8	100836191	100836191	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctatctgtctgcaatccCcattctggaaaggaggtaag	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100836191	A	A	100836191	2	1	9	1	0	0	0	0	0	0	0	1	17317	610	22	2		2	VPS13B	8	100836191	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45013	100836191	45527831	9669	17820											
VPS13B	157680	broad.mit.edu	37	chr8	100866130	100866130	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctttgaattaaaacctgctCggttatacgtggaagacaca	9	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100866130	A	A	100866130	2	1	9	1	0	0	0	0	0	0	0	1	17317	875	31	3		3	VPS13B	8	100866130	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29939	100866130	45497892	9670	17821											
RGS22	26166	broad.mit.edu	37	chr8	101020677	101020677	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggagaaggatatattcctCtgctgtgtcaaaaaggtctt	11	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101020677	A	A	101020677	4	1	9	1	0	0	0	0	0	1	0	0	13414	922	32	3	1559	3	RGS22	8	101020677	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154547	101020677	45343345	9671	17822											
RGS22	26166	broad.mit.edu	37	chr8	101092401	101092401	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatggtctcatcttcatcGggggcattcatttgaacagg	10	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101092401	T	T	101092401	2	4	9	1	0	0	0	0	0	0	0	1	13414	1103	39	1		1	RGS22	8	101092401	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	71724	101092401	45271621	9672	17823											
RNF19A	25897	broad.mit.edu	37	chr8	101271374	101271374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccgccagcatgacttcGggtggcactgccatcatcca	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101271374	T	T	101271374	2	4	9	1	0	0	0	0	0	0	0	1	13581	1124	39	1		1	RNF19A	8	101271374	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	178973	101271374	45092648	9673	17824											
RNF19A	25897	broad.mit.edu	37	chr8	101273950	101273950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccctcccctatgcttGggttgtgtcttgcttctgct	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101273950	T	T	101273950	3	4	9	1	0	0	0	0	1	0	0	0	13581	1348	47	2	1026	2	RNF19A	8	101273950	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2576	101273950	45090072	9674	17825											
RNF19A	25897	broad.mit.edu	37	chr8	101300024	101300024	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcactctatgaagtctcCaatttgtttgctgatggaag	11	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101300024	A	A	101300024	4	1	9	1	0	0	0	0	0	1	0	0	13581	603	21	2	2173	2	RNF19A	8	101300024	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26074	101300024	45063998	9675	17826											
RNF19A	25897	broad.mit.edu	37	chr8	101300144	101300144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgcaattccatccacccCgccatttagctcccttgatt	4	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101300144	A	A	101300144	3	1	9	1	0	0	0	0	1	0	0	0	13581	652	23	1	2293	1	RNF19A	8	101300144	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120	101300144	45063878	9676	17827											
ANKRD46	157567	broad.mit.edu	37	chr8	101540109	101540109	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgcatggtctccagtttcGagtgggttcctctgttaaat	10	8	2	0	rs140674239		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101540109	T	T	101540109	4	4	9	1	0	0	0	0	0	1	0	0	674	1059	37	3	260	3	ANKRD46	8	101540109	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	239965	101540109	44823913	9677	17828											
SNX31	169166	broad.mit.edu	37	chr8	101601178	101601178	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagttctggttgagagttctCtggggcccatccgtatccag	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101601178	A	A	101601178	3	1	9	1	0	0	0	0	1	0	0	0	15015	912	32	3	330	3	SNX31	8	101601178	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61069	101601178	44762844	9678	17829											
SNX31	169166	broad.mit.edu	37	chr8	101601190	101601190	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagttctctggggcccatcCgtatccagcagagttcccta	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101601190	A	A	101601190	2	1	9	1	0	0	0	0	0	0	0	1	15015	639	23	1		1	SNX31	8	101601190	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	101601190	44762832	9679	17830											
SNX31	169166	broad.mit.edu	37	chr8	101612661	101612661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatcctttttcaatgtcCtgtattgccttaaaataaca	4	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101612661	A	A	101612661	3	1	9	1	0	0	0	0	1	0	0	0	15015	680	24	2	656	2	SNX31	8	101612661	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11471	101612661	44751361	9680	17831											
PABPC1	26986	broad.mit.edu	37	chr8	101716588	101716588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcctctttagcttggtGggcttgtagtacagctacag	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101716588	T	T	101716588	3	4	9	1	0	0	0	0	1	0	0	0	11457	1348	47	2	65	2	PABPC1	8	101716588	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	103927	101716588	44647434	9681	17832											
PABPC1	26986	broad.mit.edu	37	chr8	101724631	101724631	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggagaaaactctttccGgagacgttcatcatcaatac	7	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101724631	T	T	101724631	2	4	9	1	0	0	0	0	0	0	0	1	11457	1115	39	1		1	PABPC1	8	101724631	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8043	101724631	44639391	9682	17833											
YWHAZ	7534	broad.mit.edu	37	chr8	101960911	101960911	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttttctcagcaccttcCgtcttttgttcaatacttga	5	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101960911	A	A	101960911	2	1	9	1	0	0	0	0	0	0	0	1	17633	639	23	1		1	YWHAZ	8	101960911	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	236280	101960911	44403111	9683	17834											
GRHL2	79977	broad.mit.edu	37	chr8	102555524	102555524	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccctccattcaataccCgaagagcctacaccagtgag	8	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102555524	A	A	102555524	2	1	9	1	0	0	0	0	0	0	0	1	6830	644	23	1		1	GRHL2	8	102555524	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	594613	102555524	43808498	9684	17835											
NCALD	83988	broad.mit.edu	37	chr8	102731650	102731650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatttgcatcgaaggtgcGgaagacatgctctgcaaatt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102731650	T	T	102731650	3	4	9	1	0	0	0	0	1	0	0	0	10296	1116	39	1	385	1	NCALD	8	102731650	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	176126	102731650	43632372	9685	17836											
UBR5	51366	broad.mit.edu	37	chr8	103279262	103279262	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaaaaagcctttcacattcCagataacggagacttctaga	6	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103279262	G	G	103279262	1	3	9	0	1	0	0	0	0	0	0	0	17031	609	21	4		4	UBR5	8	103279262	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	547612	103279262	43084760	9686	17837											
UBR5	51366	broad.mit.edu	37	chr8	103301735	103301735	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatctctgccccgaacGggctgtgactggctgatgcg	12	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103301735	T	T	103301735	2	4	9	1	0	0	0	0	0	0	0	1	17031	1103	39	1		1	UBR5	8	103301735	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22473	103301735	43062287	9687	17838											
UBR5	51366	broad.mit.edu	37	chr8	103306279	103306279	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcacagcaatagcttcttctCtacgtccaggtgtatatttg	7	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103306279	A	A	103306279	3	1	9	1	0	0	0	0	1	0	0	0	17031	913	32	3	4254	3	UBR5	8	103306279	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4544	103306279	43057743	9688	17839											
UBR5	51366	broad.mit.edu	37	chr8	103316393	103316393	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttctttcagaacgctcCgcttctgaaaaatgagaaaa	7	8	3	3	rs145454925		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103316393	A	A	103316393	2	1	9	1	0	0	0	0	0	0	0	1	17031	639	23	1		1	UBR5	8	103316393	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10114	103316393	43047629	9689	17840											
UBR5	51366	broad.mit.edu	37	chr8	103326078	103326078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccacaaaaaccacttccCgaagagaccactgctcttca	4	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103326078	A	A	103326078	3	1	9	1	0	0	0	0	1	0	0	0	17031	652	23	1	6614	1	UBR5	8	103326078	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9685	103326078	43037944	9690	17841											
UBR5	51366	broad.mit.edu	37	chr8	103354741	103354741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttctcctagagatactGgactttgaacaggtgtattc	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103354741	T	T	103354741	3	4	9	1	0	0	0	0	1	0	0	0	17031	1348	47	2	7545	2	UBR5	8	103354741	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28663	103354741	43009281	9691	17842											
UBR5	51366	broad.mit.edu	37	chr8	103372397	103372397	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgacgtcctccctgccccCgagttgctgttcaactttga	8	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103372397	A	A	103372397	2	1	9	1	0	0	0	0	0	0	0	1	17031	639	23	1		1	UBR5	8	103372397	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17656	103372397	42991625	9692	17843											
ODF1	4956	broad.mit.edu	37	chr8	103564056	103564056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgacgaatttagcacacGgtgcctgtgcgacttgtata	10	10	0	0	rs117958007	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103564056	T	T	103564056	3	4	9	1	0	0	0	0	1	0	0	0	10921	1116	39	1	103	1	ODF1	8	103564056	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	191659	103564056	42799966	9693	17844											
ODF1	4956	broad.mit.edu	37	chr8	103564113	103564113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgacttgcacccatatcCgtactgcttgtgctattcca	7	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103564113	A	A	103564113	3	1	9	1	0	0	0	0	1	0	0	0	10921	652	23	1	160	1	ODF1	8	103564113	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	103564113	42799909	9694	17845											
KLF10	7071	broad.mit.edu	37	chr8	103662531	103662531	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcaaatttcttctcaccCgtgtgggttcgcctgtgtct	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103662531	A	A	103662531	2	1	9	1	0	0	0	0	0	0	0	1	8409	639	23	1		1	KLF10	8	103662531	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	98418	103662531	42701491	9695	17846											
KLF10	7071	broad.mit.edu	37	chr8	103663439	103663439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatgtcttgccacatcctGggtggctacagatgtgactc	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103663439	T	T	103663439	3	4	9	1	0	0	0	0	1	0	0	0	8409	1348	47	2	329	2	KLF10	8	103663439	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	908	103663439	42700583	9696	17847											
ATP6V1C1	528	broad.mit.edu	37	chr8	104076955	104076955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatagggaccacttgtacGgtggctgaaagtgaatttta	11	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104076955	T	T	104076955	3	4	9	1	0	0	0	0	1	0	0	0	1184	1116	39	1	880	1	ATP6V1C1	8	104076955	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	413516	104076955	42287067	9697	17848											
ATP6V1C1	528	broad.mit.edu	37	chr8	104077015	104077015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcacgtgaaagcattacGggttttcgttgagtctgttt	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104077015	T	T	104077015	3	4	9	1	0	0	0	0	1	0	0	0	1184	1116	39	1	940	1	ATP6V1C1	8	104077015	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60	104077015	42287007	9698	17849											
ATP6V1C1	528	broad.mit.edu	37	chr8	104078693	104078693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtaagtacttattagccCagtagagtaagaattgaagt	10	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104078693	A	A	104078693	1	1	9	0	1	0	0	0	0	0	0	0	1184	609	21	2		2	ATP6V1C1	8	104078693	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1678	104078693	42285329	9699	17850											
FZD6	8323	broad.mit.edu	37	chr8	104343632	104343632	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacaatttgcaggtcccCagttcttcagaaccaagcag	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104343632	A	A	104343632	2	1	9	1	0	0	0	0	0	0	0	1	6194	581	21	2		2	FZD6	8	104343632	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	264939	104343632	42020390	9700	17851											
SLC25A32	81034	broad.mit.edu	37	chr8	104413805	104413805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgtgttgatcctgaagacGagctcttacgacttgatatg	10	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104413805	T	T	104413805	3	4	9	1	0	0	0	0	1	0	0	0	14610	1058	37	3	204	3	SLC25A32	8	104413805	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70173	104413805	41950217	9701	17852											
DCAF13	25879	broad.mit.edu	37	chr8	104433239	104433239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactcagcggaattgtatcCgtacaatacaagcacatgaa	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104433239	A	A	104433239	3	1	9	1	0	0	0	0	1	0	0	0	4299	652	23	1	773	1	DCAF13	8	104433239	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19434	104433239	41930783	9702	17853											
RIMS2	9699	broad.mit.edu	37	chr8	105025752	105025752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgagcggaccaccaccCgctccagatccactgaacgt	8	17	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105025752	A	A	105025752	1	1	9	0	1	0	0	0	0	0	0	0	13479	652	23	1		1	RIMS2	8	105025752	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	592513	105025752	41338270	9703	17854											
DPYS	1807	broad.mit.edu	37	chr8	105440229	105440229	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcctttttcccatattacGgacatccgatcttcaacacc	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105440229	T	T	105440229	2	4	9	1	0	0	0	0	0	0	0	1	4786	1103	39	1		1	DPYS	8	105440229	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	414477	105440229	40923793	9704	17855											
DPYS	1807	broad.mit.edu	37	chr8	105441832	105441832	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggtcgcaaaggtggaccCatgacatggtgggctgcatg	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105441832	G	G	105441832	3	3	9	1	0	0	0	0	1	0	0	0	4786	594	21	4	688	4	DPYS	8	105441832	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1603	105441832	40922190	9705	17856											
LRP12	29967	broad.mit.edu	37	chr8	105510107	105510107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtaaactttggtaaaacGggataaacactggaactggt	11	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105510107	T	T	105510107	3	4	9	1	0	0	0	0	1	0	0	0	9041	1116	39	1	1918	1	LRP12	8	105510107	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68275	105510107	40853915	9706	17857											
ZFPM2	23414	broad.mit.edu	37	chr8	106440920	106440920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactctttaaaatagtttgaCctcaacacaaaataagacta	3	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106440920	A	A	106440920	1	1	9	0	1	0	0	0	0	0	0	0	17784	522	18	3		3	ZFPM2	8	106440920	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	930813	106440920	39923102	9707	17858											
ZFPM2	23414	broad.mit.edu	37	chr8	106813921	106813921	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtagtagctaccctccCgtcatttacagccctttgat	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106813921	A	A	106813921	2	1	9	1	0	0	0	0	0	0	0	1	17784	639	23	1		1	ZFPM2	8	106813921	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	373001	106813921	39550101	9708	17859											
ZFPM2	23414	broad.mit.edu	37	chr8	106814101	106814101	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctgaagctttgagtccCaacactggccaaacctccat	7	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106814101	A	A	106814101	2	1	9	1	0	0	0	0	0	0	0	1	17784	581	21	2		2	ZFPM2	8	106814101	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	180	106814101	39549921	9709	17860											
OXR1	55074	broad.mit.edu	37	chr8	107696513	107696513	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaatatgtctccagtgttGagagctctccatctctaagc	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107696513	T	T	107696513	4	4	9	1	0	0	0	0	0	1	0	0	11428	1291	45	3	672	3	OXR1	8	107696513	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	882412	107696513	38667509	9710	17861											
OXR1	55074	broad.mit.edu	37	chr8	107709762	107709762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggttatccgagaagttcCgaggattctccttggatttc	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107709762	A	A	107709762	1	1	9	0	1	0	0	0	0	0	0	0	11428	667	23	1		1	OXR1	8	107709762	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13249	107709762	38654260	9711	17862											
OXR1	55074	broad.mit.edu	37	chr8	107726069	107726069	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacagatcacttgtatgcCttcttcattcagtggagtcc	9	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107726069	A	A	107726069	2	1	9	1	0	0	0	0	0	0	0	1	11428	668	24	2		2	OXR1	8	107726069	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16307	107726069	38637953	9712	17863											
ABRA	137735	broad.mit.edu	37	chr8	107782169	107782169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgtccttctggcaggcGgggtggcgactttggggcac	16	11	1	0	rs145381419		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107782169	T	T	107782169	3	4	9	1	0	0	0	0	1	0	0	0	100	1116	39	1	903	1	ABRA	8	107782169	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56100	107782169	38581853	9713	17864											
TTC35	9694	broad.mit.edu	37	chr8	109462076	109462076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagataaaatgagaaaatGgagagaagaaaactcaagaa	11	2	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109462076	T	T	109462076	3	4	9	1	0	0	0	0	1	0	0	0	16829	1357	47	2	71	2	TTC35	8	109462076	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1679907	109462076	36901946	9714	17865											
TMEM74	157753	broad.mit.edu	37	chr8	109797038	109797038	+	Missense_Mutation	SNP	C	A	A													tgcagcagttacagactttcCgttccgctgttatttggttg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109797038	A	A	109797038	3	1	9	1	0	0	0	0	1	0	0	0	16325	652	23	1	631	1	TMEM74	8	109797038	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	334962	109797038	36566984	9715	17866	115	2									
TMEM74	157753	broad.mit.edu	37	chr8	109797043	109797043	+	Silent	SNP	C	A	A													cagttacagactttccgttcCgctgttatttggttgttccc					rs149009435	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109797043	A	A	109797043	2	1	9	1	0	0	0	0	0	0	0	1	16325	639	23	1		1	TMEM74	8	109797043	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5	109797043	36566979	9716	17867	115	2									
NUDCD1	84955	broad.mit.edu	37	chr8	110255473	110255473	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actcacaaagggctgcatacGagtaatttggagcacaggca	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110255473	T	T	110255473	4	4	9	1	0	0	0	0	0	1	0	0	10817	1059	37	3	238	3	NUDCD1	8	110255473	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	458430	110255473	36108549	9717	17868											
NUDCD1	84955	broad.mit.edu	37	chr8	110308695	110308695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccatctgacaaggtaaccCaggtagaagatgagaaatgg	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110308695	A	A	110308695	3	1	9	1	0	0	0	0	1	0	0	0	10817	595	21	2	1406	2	NUDCD1	8	110308695	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53222	110308695	36055327	9718	17869											
ENY2	56943	broad.mit.edu	37	chr8	110346716	110346716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtggtgagctatgccCgtggtcctcagggccgggac	17	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110346716	A	A	110346716	1	1	9	0	1	0	0	0	0	0	0	0	5188	667	23	1		1	ENY2	8	110346716	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38021	110346716	36017306	9719	17870											
PKHD1L1	93035	broad.mit.edu	37	chr8	110412488	110412488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtggatttttggtggctcCagattctgatgtttatagat	11	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110412488	A	A	110412488	3	1	9	1	0	0	0	0	1	0	0	0	12067	594	21	2	1246	2	PKHD1L1	8	110412488	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65772	110412488	35951534	9720	17871											
PKHD1L1	93035	broad.mit.edu	37	chr8	110432848	110432848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggccaactatgacaaacCaatattctgttaccatgact	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110432848	A	A	110432848	3	1	9	1	0	0	0	0	1	0	0	0	12067	595	21	2	2716	2	PKHD1L1	8	110432848	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20360	110432848	35931174	9721	17872											
PKHD1L1	93035	broad.mit.edu	37	chr8	110445369	110445369	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacaattctaaccatagtGggttctggattttctcctag	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110445369	T	T	110445369	2	4	9	1	0	0	0	0	0	0	0	1	12067	1335	47	2		2	PKHD1L1	8	110445369	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12521	110445369	35918653	9722	17873											
PKHD1L1	93035	broad.mit.edu	37	chr8	110453071	110453071	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaataccagctgagaatacCgtgctgttaggtaagagctt	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110453071	A	A	110453071	2	1	9	1	0	0	0	0	0	0	0	1	12067	639	23	1		1	PKHD1L1	8	110453071	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7702	110453071	35910951	9723	17874											
PKHD1L1	93035	broad.mit.edu	37	chr8	110454320	110454320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcattggcaaacacatcCgtttcttagagggataggat	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110454320	A	A	110454320	3	1	9	1	0	0	0	0	1	0	0	0	12067	652	23	1	4427	1	PKHD1L1	8	110454320	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1249	110454320	35909702	9724	17875											
PKHD1L1	93035	broad.mit.edu	37	chr8	110455884	110455884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttattcatgacttaacGggcagttcttttgtctaaag	8	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110455884	T	T	110455884	1	4	9	0	1	0	0	0	0	0	0	0	12067	1131	39	1		1	PKHD1L1	8	110455884	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1564	110455884	35908138	9725	17876											
PKHD1L1	93035	broad.mit.edu	37	chr8	110476966	110476966	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatatttccccatgcaaacGggatcttgtacatctacagt	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110476966	T	T	110476966	2	4	9	1	0	0	0	0	0	0	0	1	12067	1103	39	1		1	PKHD1L1	8	110476966	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21082	110476966	35887056	9726	17877											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477010	110477010	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcacctgcaatatttaactCacttactacttggaattgtc	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110477010	A	A	110477010	4	1	9	1	0	0	0	0	0	1	0	0	12067	838	29	3	8143	3	PKHD1L1	8	110477010	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	110477010	35887012	9727	17878											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477303	110477303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactttatgaactttgacCgtcccaactgtgtagctttg	8	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110477303	A	A	110477303	3	1	9	1	0	0	0	0	1	0	0	0	12067	652	23	1	8436	1	PKHD1L1	8	110477303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	293	110477303	35886719	9728	17879											
PKHD1L1	93035	broad.mit.edu	37	chr8	110523059	110523059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccagagaaggctgtccCtgtttcacagcattgtggct	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110523059	A	A	110523059	3	1	9	1	0	0	0	0	1	0	0	0	12067	680	24	2	11731	2	PKHD1L1	8	110523059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45756	110523059	35840963	9729	17880											
PKHD1L1	93035	broad.mit.edu	37	chr8	110530626	110530626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataccaagtgacaaaatcCgtatcagcaaaataagaggg	9	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110530626	A	A	110530626	3	1	9	1	0	0	0	0	1	0	0	0	12067	652	23	1	12210	1	PKHD1L1	8	110530626	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7567	110530626	35833396	9730	17881											
SYBU	55638	broad.mit.edu	37	chr8	110587459	110587459	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcgtagggggtctccacGggagacaaaaggatggctga	17	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110587459	T	T	110587459	2	4	9	1	0	0	0	0	0	0	0	1	15545	1103	39	1		1	SYBU	8	110587459	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56833	110587459	35776563	9731	17882											
SYBU	55638	broad.mit.edu	37	chr8	110587670	110587670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacgtcggtctgaacggctCgctccaccaccacactgccc	8	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110587670	A	A	110587670	3	1	9	1	0	0	0	0	1	0	0	0	15545	884	31	3	538	3	SYBU	8	110587670	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	211	110587670	35776352	9732	17883											
SYBU	55638	broad.mit.edu	37	chr8	110592123	110592123	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatggatattgacagggctCagctgattcctgcacagcat	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110592123	T	T	110592123	2	4	9	1	0	0	0	0	0	0	0	1	15545	813	29	4		4	SYBU	8	110592123	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4453	110592123	35771899	9733	17884											
SYBU	55638	broad.mit.edu	37	chr8	110592218	110592218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagctccattactccgccCatgaggacctcgactgggag	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110592218	A	A	110592218	3	1	9	1	0	0	0	0	1	0	0	0	15545	594	21	2	1459	2	SYBU	8	110592218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	110592218	35771804	9734	17885											
KCNV1	27012	broad.mit.edu	37	chr8	110980340	110980340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccagaaatcatctccccCgctgctcctagtacttgctc	5	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110980340	A	A	110980340	3	1	9	1	0	0	0	0	1	0	0	0	8164	652	23	1	26	1	KCNV1	8	110980340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	388122	110980340	35383682	9735	17886											
CSMD3	114788	broad.mit.edu	37	chr8	113237030	113237030	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaaaccgtgttcaagttGggatcaaatcgtaccgcctt	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113237030	T	T	113237030	2	4	9	1	0	0	0	0	0	0	0	1	3980	1335	47	2		2	CSMD3	8	113237030	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2256690	113237030	33126992	9736	17887											
CSMD3	114788	broad.mit.edu	37	chr8	113253965	113253965	+	Silent	SNP	G	C	C													taaccacttagctttgggctGggtgttcccagtgcaggtct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113253965	C	C	113253965	2	2	9	1	0	0	0	0	0	0	0	1	3980	1335	47	4		4	CSMD3	8	113253965	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16935	113253965	33110057	9737	17888	116	2									
CSMD3	114788	broad.mit.edu	37	chr8	113253974	113253974	+	Silent	SNP	C	A	A													agctttgggctgggtgttccCagtgcaggtctaggatcttt					rs149077281	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113253974	A	A	113253974	2	1	9	1	0	0	0	0	0	0	0	1	3980	581	21	2		2	CSMD3	8	113253974	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	113253974	33110048	9738	17889	116	2									
CSMD3	114788	broad.mit.edu	37	chr8	113358392	113358392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatagtttccaggaaaccCaggactgaggatcacaccac	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113358392	A	A	113358392	3	1	9	1	0	0	0	0	1	0	0	0	3980	594	21	2	4871	2	CSMD3	8	113358392	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104418	113358392	33005630	9739	17890											
CSMD3	114788	broad.mit.edu	37	chr8	113421278	113421278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accactgatcaacaggaaccCggagaagcaaacaaatcacc	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113421278	A	A	113421278	1	1	9	0	1	0	0	0	0	0	0	0	3980	667	23	1		1	CSMD3	8	113421278	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62886	113421278	32942744	9740	17891											
CSMD3	114788	broad.mit.edu	37	chr8	113649261	113649261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagagagaaaaatttcccCgcgggggaggaaaggacaaa	13	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113649261	A	A	113649261	1	1	9	0	1	0	0	0	0	0	0	0	3980	667	23	1		1	CSMD3	8	113649261	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	227983	113649261	32714761	9741	17892											
CSMD3	114788	broad.mit.edu	37	chr8	113988039	113988039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttggctgtaactaaatGggcacaagtaaaataacatc	8	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113988039	T	T	113988039	1	4	9	0	1	0	0	0	0	0	0	0	3980	1363	47	2		2	CSMD3	8	113988039	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	338778	113988039	32375983	9742	17893											
CSMD3	114788	broad.mit.edu	37	chr8	114186071	114186071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtagcggatcttgtcccCgacgtcgaatcttgtgccat	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114186071	A	A	114186071	3	1	9	1	0	0	0	0	1	0	0	0	3980	652	23	1	10806	1	CSMD3	8	114186071	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	198032	114186071	32177951	9743	17894											
CSMD3	114788	broad.mit.edu	37	chr8	114448922	114448922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctttcacacaagacacCgtcaataaaaagacgaggtt	6	11	2	2	rs141568192	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114448922	A	A	114448922	2	1	9	1	0	0	0	0	0	0	0	1	3980	639	23	1		1	CSMD3	8	114448922	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	262851	114448922	31915100	9744	17895											
TRPS1	7227	broad.mit.edu	37	chr8	116427161	116427161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgacctcctctctaacGggcttccattgacttgctcc	6	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116427161	T	T	116427161	3	4	9	1	0	0	0	0	1	0	0	0	16718	1116	39	1	913	1	TRPS1	8	116427161	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1978239	116427161	29936861	9745	17896											
TRPS1	7227	broad.mit.edu	37	chr8	116430558	116430558	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggaacaagttcttacCgagtgaagcttctggtagag	13	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116430558	A	A	116430558	2	1	9	1	0	0	0	0	0	0	0	1	16718	666	23	1		1	TRPS1	8	116430558	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3397	116430558	29933464	9746	17897											
TRPS1	7227	broad.mit.edu	37	chr8	116599621	116599621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcagaaactggctctccCattttagagtctggagttag	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116599621	A	A	116599621	3	1	9	1	0	0	0	0	1	0	0	0	16718	594	21	2	1589	2	TRPS1	8	116599621	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	169063	116599621	29764401	9747	17898											
TRPS1	7227	broad.mit.edu	37	chr8	116616110	116616110	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcctcacctgtagtgtcGggaaatctcttcttccactt	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116616110	T	T	116616110	2	4	9	1	0	0	0	0	0	0	0	1	16718	1124	39	1		1	TRPS1	8	116616110	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16489	116616110	29747912	9748	17899											
TRPS1	7227	broad.mit.edu	37	chr8	116616612	116616612	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgttaccatattatcctcGgctcccttgctggagaagtc	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116616612	T	T	116616612	2	4	9	1	0	0	0	0	0	0	0	1	16718	1103	39	1		1	TRPS1	8	116616612	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	502	116616612	29747410	9749	17900											
TRPS1	7227	broad.mit.edu	37	chr8	116631448	116631448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaacggttgaccttctGgaagtctttggaatggctga	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116631448	T	T	116631448	3	4	9	1	0	0	0	0	1	0	0	0	16718	1357	47	2	3027	2	TRPS1	8	116631448	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14836	116631448	29732574	9750	17901											
TRPS1	7227	broad.mit.edu	37	chr8	116631651	116631651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctggagacagaggtgccGggtctgggttgtcattcacc	15	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116631651	T	T	116631651	3	4	9	1	0	0	0	0	1	0	0	0	16718	1116	39	1	3230	1	TRPS1	8	116631651	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	203	116631651	29732371	9751	17902											
TRPS1	7227	broad.mit.edu	37	chr8	116631852	116631852	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctttgtctccagtgagtccCctgagggggtgcaggccata	13	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116631852	G	G	116631852	3	3	9	1	0	0	0	0	1	0	0	0	16718	623	22	4	3431	4	TRPS1	8	116631852	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	201	116631852	29732170	9752	17903											
TRPS1	7227	broad.mit.edu	37	chr8	116632007	116632007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagggaaagtttcctccCttactggggctttcataatt	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116632007	A	A	116632007	3	1	9	1	0	0	0	0	1	0	0	0	16718	680	24	2	3586	2	TRPS1	8	116632007	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	155	116632007	29732015	9753	17904											
RAD21	5885	broad.mit.edu	37	chr8	117859788	117859788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgatgatgtcactgtacGgttcttcctgtgtcagctca	10	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117859788	T	T	117859788	3	4	9	1	0	0	0	0	1	0	0	0	13089	1116	39	1	52	1	RAD21	8	117859788	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1227781	117859788	28504234	9754	17905											
RAD21	5885	broad.mit.edu	37	chr8	117874152	117874152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcattataagctgcttccCgattttcctcaggcaggtca	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117874152	A	A	117874152	3	1	9	1	0	0	0	0	1	0	0	0	13089	652	23	1	1637	1	RAD21	8	117874152	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14364	117874152	28489870	9755	17906											
C8orf85	441376	broad.mit.edu	37	chr8	117950578	117950578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggttcccacctcgtccCgcgtgcgacttcttcgggga	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117950578	A	A	117950578	2	1	9	1	0	0	0	0	0	0	0	1	2467	639	23	1		1	C8orf85	8	117950578	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76426	117950578	28413444	9756	17907											
SLC30A8	169026	broad.mit.edu	37	chr8	118147513	118147513	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctttgcttccaaaactGggcagtgagttcaacaacaa	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118147513	T	T	118147513	1	4	9	0	1	0	0	0	0	0	0	0	14675	1363	47	2		2	SLC30A8	8	118147513	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	196935	118147513	28216509	9757	17908											
SLC30A8	169026	broad.mit.edu	37	chr8	118169966	118169966	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctccatcctgtgcatctGggtggtgactggcgtgctag	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118169966	T	T	118169966	3	4	9	1	0	0	0	0	1	0	0	0	14675	1357	47	2	469	2	SLC30A8	8	118169966	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22453	118169966	28194056	9758	17909											
SLC30A8	169026	broad.mit.edu	37	chr8	118184932	118184932	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgactagctcagtcacacCgtcagtttcccaaatttgac	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118184932	A	A	118184932	1	1	9	0	1	0	0	0	0	0	0	0	14675	667	23	1		1	SLC30A8	8	118184932	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	14966	118184932	28179090	9759	17910											
EXT1	2131	broad.mit.edu	37	chr8	118834828	118834828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgcttgaatattctgtcCtgaataatctagaaaataaa	6	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118834828	A	A	118834828	3	1	9	1	0	0	0	0	1	0	0	0	5366	680	24	2	975	2	EXT1	8	118834828	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	649896	118834828	27529194	9760	17911											
EXT1	2131	broad.mit.edu	37	chr8	118849336	118849336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattctgggaaggctccaGggcctcttacctgcaaagcc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118849336	T	T	118849336	1	4	9	0	1	0	0	0	0	0	0	0	5366	1015	35	2		2	EXT1	8	118849336	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14508	118849336	27514686	9761	17912											
EXT1	2131	broad.mit.edu	37	chr8	119122560	119122560	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctctcccctcctgtcctGggatgatccttagaaaagag	8	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119122560	T	T	119122560	2	4	9	1	0	0	0	0	0	0	0	1	5366	1335	47	2		2	EXT1	8	119122560	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	273224	119122560	27241462	9762	17913											
TNFRSF11B	4982	broad.mit.edu	37	chr8	119945315	119945315	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactgcagctccttgcacacGgggctgcagtatagacactc	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119945315	C	C	119945315	2	2	9	1	0	0	0	0	0	0	0	1	16408	1103	39	4		4	TNFRSF11B	8	119945315	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	822755	119945315	26418707	9763	17914											
ENPP2	5168	broad.mit.edu	37	chr8	120592316	120592316	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttttcgattttcgaaaacGagaaaaaccttatctgatta	5	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120592316	T	T	120592316	1	4	9	0	1	0	0	0	0	0	0	0	5172	1073	37	3		3	ENPP2	8	120592316	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	647001	120592316	25771706	9764	17915											
ENPP2	5168	broad.mit.edu	37	chr8	120592382	120592382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacccttttgtatgaagcCgtttgttgagttcatccaac	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120592382	A	A	120592382	3	1	9	1	0	0	0	0	1	0	0	0	5172	652	23	1	944	1	ENPP2	8	120592382	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	120592382	25771640	9765	17916											
ENPP2	5168	broad.mit.edu	37	chr8	120592424	120592424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcttcatgtgtgaaaacCagtaaaggaaaaaagaaagc	9	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120592424	A	A	120592424	1	1	9	0	1	0	0	0	0	0	0	0	5172	609	21	2		2	ENPP2	8	120592424	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	120592424	25771598	9766	17917											
ENPP2	5168	broad.mit.edu	37	chr8	120594733	120594733	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacataatccctggataattGggtctggtaacttcctctgg	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120594733	T	T	120594733	2	4	9	1	0	0	0	0	0	0	0	1	5172	1335	47	2		2	ENPP2	8	120594733	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2309	120594733	25769289	9767	17918											
ENPP2	5168	broad.mit.edu	37	chr8	120606024	120606024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagatgacgttgacacacCgatgcagttttagttgtttc	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120606024	A	A	120606024	3	1	9	1	0	0	0	0	1	0	0	0	5172	652	23	1	1677	1	ENPP2	8	120606024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11291	120606024	25757998	9768	17919											
ENPP2	5168	broad.mit.edu	37	chr8	120608098	120608098	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaacttactttgtcctgacGagtttccgcagcataatgat	7	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120608098	T	T	120608098	1	4	9	0	1	0	0	0	0	0	0	0	5172	1058	37	3		3	ENPP2	8	120608098	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2074	120608098	25755924	9769	17920											
TAF2	6873	broad.mit.edu	37	chr8	120756539	120756539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcttacctggagttgacGgcctttcaagcatgtttaaa	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120756539	T	T	120756539	3	4	9	1	0	0	0	0	1	0	0	0	15643	1116	39	1	408	1	TAF2	8	120756539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	148441	120756539	25607483	9770	17921											
TAF2	6873	broad.mit.edu	37	chr8	120805635	120805635	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttcctccaccaaatatGggatgtagtaaaaccccacc	5	13	1	0	rs143518133		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120805635	T	T	120805635	2	4	9	1	0	0	0	0	0	0	0	1	15643	1335	47	2		2	TAF2	8	120805635	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	49096	120805635	25558387	9771	17922											
TAF2	6873	broad.mit.edu	37	chr8	120816186	120816186	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatacttccctctacactGggtaccacaaaatgaagacc	6	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120816186	T	T	120816186	2	4	9	1	0	0	0	0	0	0	0	1	15643	1335	47	2		2	TAF2	8	120816186	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10551	120816186	25547836	9772	17923											
COL14A1	7373	broad.mit.edu	37	chr8	121256198	121256198	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaagtcacagtgactccCatctacacggatggcgaagg	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121256198	A	A	121256198	2	1	9	1	0	0	0	0	0	0	0	1	3703	581	21	2		2	COL14A1	8	121256198	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	440012	121256198	25107824	9773	17924											
COL14A1	7373	broad.mit.edu	37	chr8	121383411	121383411	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccccatccagatcagccaGagttcacccctgtccaagat	6	17	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121383411	T	T	121383411	4	4	9	1	0	0	0	0	0	1	0	0	3703	943	33	3	5518	3	COL14A1	8	121383411	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127213	121383411	24980611	9774	17925											
MTBP	27085	broad.mit.edu	37	chr8	121535548	121535548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccctaggtgattgactGggtattagaaaagacaagca	10	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121535548	T	T	121535548	3	4	9	1	0	0	0	0	1	0	0	0	10006	1357	47	2	2773	2	MTBP	8	121535548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	152137	121535548	24828474	9775	17926											
HAS2	3037	broad.mit.edu	37	chr8	122626661	122626661	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattgcaaacatcttggcGggaagtaaactcgacatgta	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122626661	T	T	122626661	2	4	9	1	0	0	0	0	0	0	0	1	7028	1103	39	1		1	HAS2	8	122626661	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1091113	122626661	23737361	9776	17927											
ZHX2	22882	broad.mit.edu	37	chr8	123964399	123964399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacgtggaagggaccgccCgcctggtgacagacacagct	13	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123964399	A	A	123964399	3	1	9	1	0	0	0	0	1	0	0	0	17802	652	23	1	651	1	ZHX2	8	123964399	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1337738	123964399	22399623	9777	17928											
WDR67	93594	broad.mit.edu	37	chr8	124146419	124146419	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaatgagacagctggaactCgaatcacaaaagagacttta	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124146419	A	A	124146419	2	1	9	1	0	0	0	0	0	0	0	1	17445	871	31	3		3	WDR67	8	124146419	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	182020	124146419	22217603	9778	17929											
FAM83A	84985	broad.mit.edu	37	chr8	124206460	124206460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggtgcagaccagctccCgctgctcagacacaaacacc	10	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124206460	A	A	124206460	1	1	9	0	1	0	0	0	0	0	0	0	5686	667	23	1		1	FAM83A	8	124206460	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60041	124206460	22157562	9779	17930											
ZHX1	11244	broad.mit.edu	37	chr8	124266479	124266479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttttctctttaaacttttGgggagtaaagtcaggaaaag	10	4	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124266479	T	T	124266479	3	4	9	1	0	0	0	0	1	0	0	0	17801	1357	47	2	917	2	ZHX1	8	124266479	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60019	124266479	22097543	9780	17931											
ATAD2	29028	broad.mit.edu	37	chr8	124346147	124346147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagccacaggagtactcGgtgtctttagcttttcattc	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124346147	T	T	124346147	3	4	9	1	0	0	0	0	1	0	0	0	1075	1116	39	1	743	1	ATAD2	8	124346147	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	79668	124346147	22017875	9781	17932											
ATAD2	29028	broad.mit.edu	37	chr8	124357230	124357230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgtggctttaagtgtcGgtccaactatttcccaccac	7	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124357230	T	T	124357230	3	4	9	1	0	0	0	0	1	0	0	0	1075	1116	39	1	1600	1	ATAD2	8	124357230	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11083	124357230	22006792	9782	17933											
KLHL38	340359	broad.mit.edu	37	chr8	124664364	124664364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaacaggagtttgcagtctGggacggtggtgccacacaaa	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124664364	T	T	124664364	3	4	9	1	0	0	0	0	1	0	0	0	8461	1348	47	2	954	2	KLHL38	8	124664364	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	307134	124664364	21699658	9783	17934											
ANXA13	312	broad.mit.edu	37	chr8	124693374	124693374	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgccaagaaagtaatccGggactcttaagggttttcgt	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124693374	T	T	124693374	1	4	9	0	1	0	0	0	0	0	0	0	717	1131	39	1		1	ANXA13	8	124693374	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	29010	124693374	21670648	9784	17935											
ANXA13	312	broad.mit.edu	37	chr8	124705930	124705930	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaagaatttgcagagaCtggcatgtctgcacacatac	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124705930	A	A	124705930	1	1	9	0	1	0	0	0	0	0	0	0	717	580	20	3		3	ANXA13	8	124705930	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12556	124705930	21658092	9785	17936											
FER1L6	654463	broad.mit.edu	37	chr8	125022894	125022894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctatttcatcagctcttgGggagaccagaccttcaggct	10	11	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125022894	T	T	125022894	3	4	9	1	0	0	0	0	1	0	0	0	5872	1241	43	2	1811	2	FER1L6	8	125022894	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	316964	125022894	21341128	9786	17937											
FER1L6	654463	broad.mit.edu	37	chr8	125033765	125033765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagatctctcgaaagaccCacactgactcttgtcttgtt	6	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125033765	A	A	125033765	1	1	9	0	1	0	0	0	0	0	0	0	5872	609	21	2		2	FER1L6	8	125033765	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10871	125033765	21330257	9787	17938											
FER1L6	654463	broad.mit.edu	37	chr8	125088524	125088524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagacagaaatcaaagaccGggataaatacatccctaaac	6	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125088524	T	T	125088524	3	4	9	1	0	0	0	0	1	0	0	0	5872	1116	39	1	4300	1	FER1L6	8	125088524	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54759	125088524	21275498	9788	17939											
TMEM65	157378	broad.mit.edu	37	chr8	125332370	125332370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacatgtcaacttgctttGgtgtgagatcaggaattgac	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125332370	T	T	125332370	3	4	9	1	0	0	0	0	1	0	0	0	16317	1348	47	2	152	2	TMEM65	8	125332370	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	243846	125332370	21031652	9789	17940											
MTSS1	9788	broad.mit.edu	37	chr8	125565333	125565333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctccttgtggagtatccCttgggctcaggtctgcaggg	13	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125565333	A	A	125565333	3	1	9	1	0	0	0	0	1	0	0	0	10056	681	24	2	103	2	MTSS1	8	125565333	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	232963	125565333	20798689	9790	17941											
MTSS1	9788	broad.mit.edu	37	chr8	125565402	125565402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcacttgggggttccCgttcctggtcttcagcttca	12	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125565402	A	A	125565402	3	1	9	1	0	0	0	0	1	0	0	0	10056	652	23	1	172	1	MTSS1	8	125565402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69	125565402	20798620	9791	17942											
MTSS1	9788	broad.mit.edu	37	chr8	125565468	125565468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagggatactgggcttcGggcctggaagtggagggtta	17	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125565468	T	T	125565468	3	4	9	1	0	0	0	0	1	0	0	0	10056	1116	39	1	238	1	MTSS1	8	125565468	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66	125565468	20798554	9792	17943											
ZNF572	137209	broad.mit.edu	37	chr8	125989167	125989167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaccctacaaatgtccCgagtgtgggaagagattcag	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125989167	A	A	125989167	2	1	9	1	0	0	0	0	0	0	0	1	18131	639	23	1		1	ZNF572	8	125989167	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	423699	125989167	20374855	9793	17944											
SQLE	6713	broad.mit.edu	37	chr8	126015633	126015633	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggagaattcctgcagccGggtggttatcatgttctcaa	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126015633	T	T	126015633	2	4	9	1	0	0	0	0	0	0	0	1	15246	1103	39	1		1	SQLE	8	126015633	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26466	126015633	20348389	9794	17945											
KIAA0196	9897	broad.mit.edu	37	chr8	126040915	126040915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggaacagaagggcacCcacaacatctgcaggaattt	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126040915	A	A	126040915	3	1	9	1	0	0	0	0	1	0	0	0	8231	623	22	2	117	2	KIAA0196	8	126040915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25282	126040915	20323107	9795	17946											
KIAA0196	9897	broad.mit.edu	37	chr8	126044541	126044541	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcagcgccaggaactgctCggtgtaccgggaatggaact	13	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126044541	A	A	126044541	4	1	9	1	0	0	0	0	0	1	0	0	8231	893	31	3	214	3	KIAA0196	8	126044541	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3626	126044541	20319481	9796	17947											
NSMCE2	286053	broad.mit.edu	37	chr8	126194565	126194565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacttgatgaacagcccCagttaactgattttataaag	7	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126194565	A	A	126194565	1	1	9	0	1	0	0	0	0	0	0	0	10771	609	21	2		2	NSMCE2	8	126194565	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	150024	126194565	20169457	9797	17948											
TRIB1	10221	broad.mit.edu	37	chr8	126445538	126445538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttttctagccccctaaacGggccccccttctctctacag	6	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126445538	T	T	126445538	1	4	9	0	1	0	0	0	0	0	0	0	16606	1131	39	1		1	TRIB1	8	126445538	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	250973	126445538	19918484	9798	17949											
MYC	4609	broad.mit.edu	37	chr8	128753099	128753099	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacagcatacatcctgtcCgtccaagcagaggagcaaaa	9	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128753099	A	A	128753099	2	1	9	1	0	0	0	0	0	0	0	1	10110	639	23	1		1	MYC	8	128753099	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2307561	128753099	17610923	9799	17950											
GSDMC	56169	broad.mit.edu	37	chr8	130777973	130777973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcaacagcctctgtcacCacgtacaggttgtcccctct	7	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130777973	A	A	130777973	2	1	9	1	0	0	0	0	0	0	0	1	6884	581	21	2		2	GSDMC	8	130777973	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2024874	130777973	15586049	9800	17951											
ASAP1	50807	broad.mit.edu	37	chr8	131124323	131124323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggatggagtcacaagccCttctcaaagcccataccttt	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131124323	A	A	131124323	1	1	9	0	1	0	0	0	0	0	0	0	1014	696	24	2		2	ASAP1	8	131124323	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	346350	131124323	15239699	9801	17952											
ASAP1	50807	broad.mit.edu	37	chr8	131124450	131124450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggctccataggagagcCgctgtttgtcccttggagtg	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131124450	A	A	131124450	3	1	9	1	0	0	0	0	1	0	0	0	1014	652	23	1	1126	1	ASAP1	8	131124450	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127	131124450	15239572	9802	17953											
ASAP1	50807	broad.mit.edu	37	chr8	131172096	131172096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacactgagacactgggctGggctcatacatacccgtcac	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131172096	T	T	131172096	1	4	9	0	1	0	0	0	0	0	0	0	1014	1363	47	2		2	ASAP1	8	131172096	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47646	131172096	15191926	9803	17954											
ADCY8	114	broad.mit.edu	37	chr8	131793034	131793034	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccccgtgctgtccattcGgcttgccaggttcacagttt	9	14	1	0	rs150698439	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131793034	T	T	131793034	2	4	9	1	0	0	0	0	0	0	0	1	300	1124	39	1		1	ADCY8	8	131793034	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	620938	131793034	14570988	9804	17955											
ADCY8	114	broad.mit.edu	37	chr8	131812723	131812723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgcaggcattccactccCtggttattcatttcagtctg	8	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131812723	A	A	131812723	3	1	9	1	0	0	0	0	1	0	0	0	300	680	24	2	762	2	ADCY8	8	131812723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19689	131812723	14551299	9805	17956											
ADCY8	114	broad.mit.edu	37	chr8	131916030	131916030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacttacattctgtttcccCacgatattatcaaagggcag	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131916030	A	A	131916030	2	1	9	1	0	0	0	0	0	0	0	1	300	581	21	2		2	ADCY8	8	131916030	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	103307	131916030	14447992	9806	17957											
ADCY8	114	broad.mit.edu	37	chr8	131921957	131921957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgctttatcttacccaGggattcctccagattcgagt	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131921957	T	T	131921957	3	4	9	1	0	0	0	0	1	0	0	0	300	1000	35	2	2170	2	ADCY8	8	131921957	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5927	131921957	14442065	9807	17958											
ADCY8	114	broad.mit.edu	37	chr8	131922034	131922034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgccacttccttagtccCaaaacaccgcacagcaccga	5	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131922034	A	A	131922034	3	1	9	1	0	0	0	0	1	0	0	0	300	593	21	2	2247	2	ADCY8	8	131922034	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	131922034	14441988	9808	17959											
EFR3A	23167	broad.mit.edu	37	chr8	133014002	133014002	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttcacttatcacttttctCtaggttagtaacactgaaga	5	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133014002	A	A	133014002	1	1	9	0	1	0	0	0	0	0	0	0	4998	928	32	3		3	EFR3A	8	133014002	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1091968	133014002	13350020	9809	17960											
EFR3A	23167	broad.mit.edu	37	chr8	133015532	133015532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattggaactcaccatacGgtaagggttttgttatcaca	8	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133015532	T	T	133015532	3	4	9	1	0	0	0	0	1	0	0	0	4998	1130	39	1	2446	1	EFR3A	8	133015532	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1530	133015532	13348490	9810	17961											
OC90	729330	broad.mit.edu	37	chr8	133061928	133061928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcctgacatacctgaggaCtgacagccctttccatataa	7	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133061928	A	A	133061928	1	1	9	0	1	0	0	0	0	0	0	0	10909	580	20	3		3	OC90	8	133061928	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46396	133061928	13302094	9811	17962											
KCNQ3	3786	broad.mit.edu	37	chr8	133142182	133142182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgacctgcacctgcaacCgttccatgtgttgcatgtgc	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133142182	A	A	133142182	3	1	9	1	0	0	0	0	1	0	0	0	8154	652	23	1	676	1	KCNQ3	8	133142182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80254	133142182	13221840	9812	17963											
KCNQ3	3786	broad.mit.edu	37	chr8	133150175	133150175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagcatgtcgagatgccCggcagaatactgctcaatca	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133150175	A	A	133150175	3	1	9	1	0	0	0	0	1	0	0	0	8154	652	23	1	977	1	KCNQ3	8	133150175	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7993	133150175	13213847	9813	17964											
KCNQ3	3786	broad.mit.edu	37	chr8	133153555	133153555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggattagaaaggcgaaccCgatccaagagacccagcttt	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133153555	A	A	133153555	3	1	9	1	0	0	0	0	1	0	0	0	8154	652	23	1	1356	1	KCNQ3	8	133153555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3380	133153555	13210467	9814	17965											
KCNQ3	3786	broad.mit.edu	37	chr8	133196529	133196529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaacttcagtcggcccCgccagcctttgtatcggcag	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133196529	A	A	133196529	3	1	9	1	0	0	0	0	1	0	0	0	8154	652	23	1	2107	1	KCNQ3	8	133196529	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42974	133196529	13167493	9815	17966											
LRRC6	23639	broad.mit.edu	37	chr8	133584678	133584678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactatgttagtcacatcaGggaatgagtgcttgctaggg	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133584678	T	T	133584678	3	4	9	1	0	0	0	0	1	0	0	0	9103	1000	35	2	127	2	LRRC6	8	133584678	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	388149	133584678	12779344	9816	17967											
LRRC6	23639	broad.mit.edu	37	chr8	133622439	133622439	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagatgaccaaatgaccCgttgtctgagatcttttagc	9	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133622439	A	A	133622439	2	1	9	1	0	0	0	0	0	0	0	1	9103	639	23	1		1	LRRC6	8	133622439	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37761	133622439	12741583	9817	17968											
TMEM71	137835	broad.mit.edu	37	chr8	133759269	133759269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaagagttgatgtcacCaaagatacttccatgcagcc	10	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133759269	A	A	133759269	3	1	9	1	0	0	0	0	1	0	0	0	16323	594	21	2	505	2	TMEM71	8	133759269	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136830	133759269	12604753	9818	17969											
TG	7038	broad.mit.edu	37	chr8	133895062	133895062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggatttcctctaggccCcacaaaatgtgaagtggagc	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133895062	A	A	133895062	3	1	9	1	0	0	0	0	1	0	0	0	15936	623	22	2	923	2	TG	8	133895062	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	135793	133895062	12468960	9819	17970											
TG	7038	broad.mit.edu	37	chr8	133899687	133899687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctgcttgtactagtgaGggacatttcctgcctgtcca	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133899687	T	T	133899687	3	4	9	1	0	0	0	0	1	0	0	0	15936	991	35	2	2104	2	TG	8	133899687	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4625	133899687	12464335	9820	17971											
TG	7038	broad.mit.edu	37	chr8	133975299	133975299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagacacagtgccaaggcCagcatctccaacagaagcag	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133975299	A	A	133975299	3	1	9	1	0	0	0	0	1	0	0	0	15936	594	21	2	5642	2	TG	8	133975299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75612	133975299	12388723	9821	17972											
TG	7038	broad.mit.edu	37	chr8	134024064	134024064	+	Intron	SNP	G	T	T													atgcccctaaggctgcctttGgggatattgggtaatacacg					rs72412164		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134024064	T	T	134024064	1	4	9	0	1	0	0	0	0	0	0	0	15936	1363	47	2		2	TG	8	134024064	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	48765	134024064	12339958	9822	17973	117	2									
TG	7038	broad.mit.edu	37	chr8	134024073	134024073	+	Intron	SNP	G	T	T													aggctgcctttggggatattGggtaatacacggctgtcttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134024073	T	T	134024073	1	4	9	0	1	0	0	0	0	0	0	0	15936	1363	47	2		2	TG	8	134024073	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	134024073	12339949	9823	17974	117	2									
TG	7038	broad.mit.edu	37	chr8	134024084	134024084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatattgggtaatacacGgctgtctttgttactcacca	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134024084	T	T	134024084	1	4	9	0	1	0	0	0	0	0	0	0	15936	1131	39	1		1	TG	8	134024084	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	134024084	12339938	9824	17975											
TG	7038	broad.mit.edu	37	chr8	134125825	134125825	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgactatgcctccttctccCgggctctggagaatgccacc	9	15	2	2	rs149730707		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134125825	A	A	134125825	2	1	9	1	0	0	0	0	0	0	0	1	15936	643	23	1		1	TG	8	134125825	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	101741	134125825	12238197	9825	17976											
ZFAT	57623	broad.mit.edu	37	chr8	135622753	135622753	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaaaccacacttatgatGggtttcttcgccccagaaag	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135622753	T	T	135622753	2	4	9	1	0	0	0	0	0	0	0	1	17758	1335	47	2		2	ZFAT	8	135622753	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1496928	135622753	10741269	9826	17977											
KHDRBS3	10656	broad.mit.edu	37	chr8	136561009	136561009	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttccaggaagaagagttgAggaaaagtggagaagcgaag	15	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136561009	C	C	136561009	2	2	9	1	0	0	0	0	0	0	0	1	8218	295	11	5		5	KHDRBS3	8	136561009	Silent	SNP	A	TCGA-05-4396-01A-21D-1855-08	938256	136561009	9803013	9827	17978											
FAM135B	51059	broad.mit.edu	37	chr8	139151307	139151307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagctgcagtagagaccCggatttcttcagtttctgca	11	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139151307	A	A	139151307	3	1	9	1	0	0	0	0	1	0	0	0	5495	652	23	1	409	1	FAM135B	8	139151307	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2590298	139151307	7212715	9828	17979											
FAM135B	51059	broad.mit.edu	37	chr8	139153537	139153537	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaggtaataccggaaccGgggccgtgtgaggaccgatc	16	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139153537	T	T	139153537	2	4	9	1	0	0	0	0	0	0	0	1	5495	1115	39	1		1	FAM135B	8	139153537	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2230	139153537	7210485	9829	17980											
FAM135B	51059	broad.mit.edu	37	chr8	139209858	139209858	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaacaggcacaggtctcGgtgccacttgtgtgcgtgct	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139209858	T	T	139209858	2	4	9	1	0	0	0	0	0	0	0	1	5495	1124	39	1		1	FAM135B	8	139209858	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56321	139209858	7154164	9830	17981											
FAM135B	51059	broad.mit.edu	37	chr8	139323149	139323149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacaccttcaaggtcactCggatctggtaatacctaaga	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139323149	A	A	139323149	3	1	9	1	0	0	0	0	1	0	0	0	5495	884	31	3	4200	3	FAM135B	8	139323149	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	113291	139323149	7040873	9831	17982											
COL22A1	169044	broad.mit.edu	37	chr8	139629183	139629183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgggtgcaccagaatcgcCtgtgtgtcccttgaagccct	11	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139629183	A	A	139629183	3	1	9	1	0	0	0	0	1	0	0	0	3713	681	24	2	1084	2	COL22A1	8	139629183	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	306034	139629183	6734839	9832	17983											
COL22A1	169044	broad.mit.edu	37	chr8	139649038	139649038	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacgttctccttgacttcCcttgaaaggaaaaaaaagaa	6	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139649038	A	A	139649038	4	1	9	1	0	0	0	0	0	1	0	0	3713	637	22	2	1450	2	COL22A1	8	139649038	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19855	139649038	6714984	9833	17984											
COL22A1	169044	broad.mit.edu	37	chr8	139727961	139727961	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttcagtcctggaagtccCagttcacctttttctcccta	5	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139727961	A	A	139727961	2	1	9	1	0	0	0	0	0	0	0	1	3713	581	21	2		2	COL22A1	8	139727961	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	78923	139727961	6636061	9834	17985											
COL22A1	169044	broad.mit.edu	37	chr8	139732983	139732983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaggcaaagtccataccCgaaggcctggttttccaggc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139732983	A	A	139732983	3	1	9	1	0	0	0	0	1	0	0	0	3713	666	23	1	2682	1	COL22A1	8	139732983	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5022	139732983	6631039	9835	17986											
COL22A1	169044	broad.mit.edu	37	chr8	139809032	139809032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctctgtcccattcccttGgaggagtgtgataaaaggaa	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139809032	T	T	139809032	1	4	9	0	1	0	0	0	0	0	0	0	3713	1363	47	2		2	COL22A1	8	139809032	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	76049	139809032	6554990	9836	17987											
COL22A1	169044	broad.mit.edu	37	chr8	139809177	139809177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaatggcaacatcatccCgagatttgaaaggattagat	9	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139809177	A	A	139809177	1	1	9	0	1	0	0	0	0	0	0	0	3713	667	23	1		1	COL22A1	8	139809177	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145	139809177	6554845	9837	17988											
COL22A1	169044	broad.mit.edu	37	chr8	139833645	139833645	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttttcaccatccagccGgatggagacctggggaggaa	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139833645	T	T	139833645	2	4	9	1	0	0	0	0	0	0	0	1	3713	1115	39	1		1	COL22A1	8	139833645	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24468	139833645	6530377	9838	17989											
COL22A1	169044	broad.mit.edu	37	chr8	139856394	139856394	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctacacgaacgctaggacaGagcacatctgaggaaagcaa	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139856394	T	T	139856394	2	4	9	1	0	0	0	0	0	0	0	1	3713	929	33	3		3	COL22A1	8	139856394	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22749	139856394	6507628	9839	17990											
TRAPPC9	83696	broad.mit.edu	37	chr8	140922435	140922435	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggatctccaggcctcGggcttcccgccgctcttcct	11	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140922435	T	T	140922435	2	4	9	1	0	0	0	0	0	0	0	1	16589	1124	39	1		1	TRAPPC9	8	140922435	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1066041	140922435	5441587	9840	17991											
TRAPPC9	83696	broad.mit.edu	37	chr8	141294107	141294107	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgaacacaccgaagacCgtggtatggtaacctggaat	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141294107	A	A	141294107	2	1	9	1	0	0	0	0	0	0	0	1	16589	639	23	1		1	TRAPPC9	8	141294107	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	371672	141294107	5069915	9841	17992											
PTK2	5747	broad.mit.edu	37	chr8	141745468	141745468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcattggtaatctttcccCattttcaattcgaccgatta	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141745468	A	A	141745468	3	1	9	1	0	0	0	0	1	0	0	0	12868	594	21	2	1290	2	PTK2	8	141745468	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	451361	141745468	4618554	9842	17993											
PTK2	5747	broad.mit.edu	37	chr8	141753429	141753429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattccgagcagcaatgtcCctgataaagaagaatttgag	9	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141753429	A	A	141753429	3	1	9	1	0	0	0	0	1	0	0	0	12868	637	22	2	1575	2	PTK2	8	141753429	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7961	141753429	4610593	9843	17994											
PTK2	5747	broad.mit.edu	37	chr8	141799683	141799683	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccccaggaccccgcaactCggcctcatcaagtggggaac	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141799683	A	A	141799683	1	1	9	0	1	0	0	0	0	0	0	0	12868	899	31	3		3	PTK2	8	141799683	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46254	141799683	4564339	9844	17995											
PTK2	5747	broad.mit.edu	37	chr8	141810558	141810558	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagaaacagcacctcacCtttctgaggtctgatgataa	8	11	4	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141810558	A	A	141810558	4	1	9	1	0	0	0	0	0	1	0	0	12868	695	24	2	2149	2	PTK2	8	141810558	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10875	141810558	4553464	9845	17996											
PTK2	5747	broad.mit.edu	37	chr8	141810651	141810651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catattctccgcaatggttaGggatggtgccgtcactgtca	11	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141810651	T	T	141810651	3	4	9	1	0	0	0	0	1	0	0	0	12868	991	35	2	2242	2	PTK2	8	141810651	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	93	141810651	4553371	9846	17997											
PTK2	5747	broad.mit.edu	37	chr8	141843042	141843042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcagggaatatcctctcCgccactgtgtggctgtcaac	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141843042	A	A	141843042	1	1	9	0	1	0	0	0	0	0	0	0	12868	667	23	1		1	PTK2	8	141843042	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32391	141843042	4520980	9847	17998											
PTK2	5747	broad.mit.edu	37	chr8	141889716	141889716	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttactttgtgactgtcCactatcttctgaatgatgcc	7	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141889716	A	A	141889716	2	1	9	1	0	0	0	0	0	0	0	1	12868	581	21	2		2	PTK2	8	141889716	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	46674	141889716	4474306	9848	17999											
DENND3	22898	broad.mit.edu	37	chr8	142173431	142173431	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactctctttctctttgttaGggatgtaaagaatcatttaa	7	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142173431	T	T	142173431	5	4	9	1	0	0	0	0	0	0	1	0	4472	1014	35	2	1146	2	DENND3	8	142173431	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	283715	142173431	4190591	9849	18000											
DENND3	22898	broad.mit.edu	37	chr8	142178127	142178127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtcacgccgaagtcccCgtatacattcaagattcccg	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142178127	A	A	142178127	3	1	9	1	0	0	0	0	1	0	0	0	4472	652	23	1	1584	1	DENND3	8	142178127	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4696	142178127	4185895	9850	18001											
DENND3	22898	broad.mit.edu	37	chr8	142185531	142185531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaaggccaggctacttGgagatttccaccttcagaaa	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142185531	T	T	142185531	3	4	9	1	0	0	0	0	1	0	0	0	4472	1339	47	2	2318	2	DENND3	8	142185531	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7404	142185531	4178491	9851	18002											
DENND3	22898	broad.mit.edu	37	chr8	142195314	142195314	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcgaaggcaaggtgacCgtgttcaatgcttcttcatg	12	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142195314	A	A	142195314	2	1	9	1	0	0	0	0	0	0	0	1	4472	639	23	1		1	DENND3	8	142195314	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9783	142195314	4168708	9852	18003											
DENND3	22898	broad.mit.edu	37	chr8	142204209	142204209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgacgccgagaggaagacCgtggagaaggagctggtggc	18	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142204209	A	A	142204209	2	1	9	1	0	0	0	0	0	0	0	1	4472	639	23	1		1	DENND3	8	142204209	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8895	142204209	4159813	9853	18004											
PTP4A3	11156	broad.mit.edu	37	chr8	142437071	142437071	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgatggggcgcccccgccCggcaaggtagtggaagactg	17	12	0	1	rs140695360	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142437071	A	A	142437071	2	1	9	1	0	0	0	0	0	0	0	1	12878	639	23	1		1	PTP4A3	8	142437071	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	232862	142437071	3926951	9854	18005											
BAI1	575	broad.mit.edu	37	chr8	143561115	143561115	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggaaggagaccccagcGggagaggtggctgctgtccg	17	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143561115	T	T	143561115	2	4	9	1	0	0	0	0	0	0	0	1	1303	1103	39	1		1	BAI1	8	143561115	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1124044	143561115	2802907	9855	18006											
BAI1	575	broad.mit.edu	37	chr8	143562683	143562683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagccccccacctacatcCgctgtgtttccattgactac	8	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143562683	A	A	143562683	3	1	9	1	0	0	0	0	1	0	0	0	1303	652	23	1	1931	1	BAI1	8	143562683	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1568	143562683	2801339	9856	18007											
BAI1	575	broad.mit.edu	37	chr8	143623435	143623435	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaatttcaacagcctgccGgccaacgtgtccaagctgca	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143623435	T	T	143623435	2	4	9	1	0	0	0	0	0	0	0	1	1303	1103	39	1		1	BAI1	8	143623435	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60752	143623435	2740587	9857	18008											
CYP11B1	1584	broad.mit.edu	37	chr8	143961142	143961142	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcactgtcctggggacccGggcggctctcgtgcccagtg	15	15	1	0	rs140274628		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143961142	T	T	143961142	2	4	9	1	0	0	0	0	0	0	0	1	4178	1115	39	1		1	CYP11B1	8	143961142	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	337707	143961142	2402880	9858	18009											
LY6E	4061	broad.mit.edu	37	chr8	144103126	144103126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcagtgcggccgatggcGggctgcgggcaagcgtcacc	16	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144103126	T	T	144103126	3	4	9	1	0	0	0	0	1	0	0	0	9179	1116	39	1	326	1	LY6E	8	144103126	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	141984	144103126	2260896	9859	18010											
GLI4	2738	broad.mit.edu	37	chr8	144351579	144351579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggaagatggcagccctaGgggacattcaggagtcccct	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144351579	T	T	144351579	3	4	9	1	0	0	0	0	1	0	0	0	6504	1000	35	2	15	2	GLI4	8	144351579	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	248453	144351579	2012443	9860	18011											
ZC3H3	23144	broad.mit.edu	37	chr8	144621295	144621295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagggtctgagggtcccGggggccgattcacgagggag	20	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144621295	T	T	144621295	3	4	9	1	0	0	0	0	1	0	0	0	17695	1116	39	1	2648	1	ZC3H3	8	144621295	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	269716	144621295	1742727	9861	18012											
ZC3H3	23144	broad.mit.edu	37	chr8	144623711	144623711	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggcccggatgtctgcCgaccgccgaggacccgccgt	15	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144623711	A	A	144623711	1	1	9	0	1	0	0	0	0	0	0	0	17695	667	23	1		1	ZC3H3	8	144623711	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	2416	144623711	1740311	9862	18013											
EEF1D	1936	broad.mit.edu	37	chr8	144669069	144669069	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catggctgggaagtgggcctCggcatcaggacagcccagaa	15	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144669069	A	A	144669069	1	1	9	0	1	0	0	0	0	0	0	0	4966	899	31	3		3	EEF1D	8	144669069	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45358	144669069	1694953	9863	18014											
ZNF623	9831	broad.mit.edu	37	chr8	144732180	144732180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatggagctcccctctccCgagtctgaggaagtccacga	12	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144732180	A	A	144732180	2	1	9	1	0	0	0	0	0	0	0	1	18174	639	23	1		1	ZNF623	8	144732180	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63111	144732180	1631842	9864	18015											
ZNF623	9831	broad.mit.edu	37	chr8	144733268	144733268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgaatgtaaggaatgtgGgaaagcgtttctccagaaag	13	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144733268	T	T	144733268	3	4	9	1	0	0	0	0	1	0	0	0	18174	1232	43	2	1228	2	ZNF623	8	144733268	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1088	144733268	1630754	9865	18016											
FAM83H	286077	broad.mit.edu	37	chr8	144811238	144811238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcagtagtaggtggggccCgccacagtccgtacgcgcag	16	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144811238	A	A	144811238	2	1	9	1	0	0	0	0	0	0	0	1	5693	639	23	1		1	FAM83H	8	144811238	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	77970	144811238	1552784	9866	18017											
SCRIB	23513	broad.mit.edu	37	chr8	144892857	144892857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcctcaccctcataccCgcttctcagctgcagcttcc	5	19	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144892857	A	A	144892857	3	1	9	1	0	0	0	0	1	0	0	0	14050	666	23	1	3668	1	SCRIB	8	144892857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81619	144892857	1471165	9867	18018											
PUF60	22827	broad.mit.edu	37	chr8	144898776	144898776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaccagcggccattgaGggcctggatggccttatgag	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144898776	T	T	144898776	3	4	9	1	0	0	0	0	1	0	0	0	12932	1000	35	2	89	2	PUF60	8	144898776	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5919	144898776	1465246	9868	18019											
PUF60	22827	broad.mit.edu	37	chr8	144898899	144898899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgacgcggttcacggcccCgaacttgccacactcctctg	10	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144898899	A	A	144898899	3	1	9	1	0	0	0	0	1	0	0	0	12932	652	23	1	212	1	PUF60	8	144898899	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	144898899	1465123	9869	18020											
PUF60	22827	broad.mit.edu	37	chr8	144902810	144902810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgactaaggacatgagcccCggaagaagtgagcatttcta	11	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144902810	A	A	144902810	1	1	9	0	1	0	0	0	0	0	0	0	12932	667	23	1		1	PUF60	8	144902810	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3911	144902810	1461212	9870	18021											
PUF60	22827	broad.mit.edu	37	chr8	144902869	144902869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagaggatctccaaagccCattgtcactgctgccatctg	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144902869	A	A	144902869	3	1	9	1	0	0	0	0	1	0	0	0	12932	594	21	2	1396	2	PUF60	8	144902869	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	144902869	1461153	9871	18022											
EPPK1	83481	broad.mit.edu	37	chr8	144940387	144940387	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acggggtcgatgacgccgccCgtggcgatctgggcctccag	16	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144940387	G	G	144940387	2	3	9	1	0	0	0	0	0	0	0	1	5232	639	23	4		4	EPPK1	8	144940387	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37518	144940387	1423635	9872	18023											
EPPK1	83481	broad.mit.edu	37	chr8	144940476	144940476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagggagatctgctgccCggtgtaggggtcggtgtagc	19	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144940476	A	A	144940476	3	1	9	1	0	0	0	0	1	0	0	0	5232	652	23	1	320	1	EPPK1	8	144940476	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89	144940476	1423546	9873	18024											
EPPK1	83481	broad.mit.edu	37	chr8	144940816	144940816	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcgtcgtgctccgtccCgtttccaggtcctggagcat	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144940816	A	A	144940816	2	1	9	1	0	0	0	0	0	0	0	1	5232	639	23	1		1	EPPK1	8	144940816	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	340	144940816	1423206	9874	18025											
EPPK1	83481	broad.mit.edu	37	chr8	144940963	144940963	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaagatgagctgcgctacCgtctgcagtgcccgtctggt	12	12	3	2	rs114125680	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144940963	A	A	144940963	2	1	9	1	0	0	0	0	0	0	0	1	5232	639	23	1		1	EPPK1	8	144940963	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	147	144940963	1423059	9875	18026											
PLEC	5339	broad.mit.edu	37	chr8	144991278	144991278	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaaaccaccggcgttgccCgagagcatgtcggcgaactc	13	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144991278	A	A	144991278	2	1	9	1	0	0	0	0	0	0	0	1	12147	639	23	1		1	PLEC	8	144991278	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50315	144991278	1372744	9876	18027											
PLEC	5339	broad.mit.edu	37	chr8	144992124	144992124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccggggcggatgatgccCttcttcatggcctggtacac	14	12	2	1	rs2857819		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144992124	A	A	144992124	3	1	9	1	0	0	0	0	1	0	0	0	12147	680	24	2	1782	2	PLEC	8	144992124	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	846	144992124	1371898	9877	18028											
PLEC	5339	broad.mit.edu	37	chr8	145000943	145000943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccagcctccgcccaacGggctgtacctcctcctcctc	7	22	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145000943	T	T	145000943	1	4	9	0	1	0	0	0	0	0	0	0	12147	1131	39	1		1	PLEC	8	145000943	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8819	145000943	1363079	9878	18029											
HEATR7A	727957	broad.mit.edu	37	chr8	145268046	145268046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacggctgttacatccCgtgctctcccttctctgcct	6	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145268046	A	A	145268046	1	1	9	0	1	0	0	0	0	0	0	0	7101	667	23	1		1	HEATR7A	8	145268046	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	267103	145268046	1095976	9879	18030											
DGAT1	8694	broad.mit.edu	37	chr8	145541730	145541730	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggcccagcctgtccccCgcacctcaggcccacagagg	10	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145541730	A	A	145541730	1	1	9	0	1	0	0	0	0	0	0	0	4497	667	23	1		1	DGAT1	8	145541730	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	273684	145541730	822292	9880	18031											
GPR172A	79581	broad.mit.edu	37	chr8	145583242	145583242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcactcttcctcccttGggcatcatgaccctgacatg	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145583242	T	T	145583242	1	4	9	0	1	0	0	0	0	0	0	0	6734	1363	47	2		2	GPR172A	8	145583242	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41512	145583242	780780	9881	18032											
GPR172A	79581	broad.mit.edu	37	chr8	145583398	145583398	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgagcaggtccccatccgGgtggtgcaggtgctgggcat	17	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145583398	T	T	145583398	2	4	9	1	0	0	0	0	0	0	0	1	6734	1219	43	2		2	GPR172A	8	145583398	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	156	145583398	780624	9882	18033											
GPR172A	79581	broad.mit.edu	37	chr8	145584068	145584068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttttcctgcttaccctacGggcgtctggcctaccacctg	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145584068	T	T	145584068	3	4	9	1	0	0	0	0	1	0	0	0	6734	1116	39	1	922	1	GPR172A	8	145584068	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	670	145584068	779954	9883	18034											
CPSF1	29894	broad.mit.edu	37	chr8	145625815	145625815	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgagggaccagatgacGgggtgcaccttctgcgtgat	16	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145625815	T	T	145625815	2	4	9	1	0	0	0	0	0	0	0	1	3856	1103	39	1		1	CPSF1	8	145625815	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41747	145625815	738207	9884	18035											
NFKBIL2	4796	broad.mit.edu	37	chr8	145668045	145668045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccactccctcctggggcGgggcagggccttactccgca	12	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145668045	T	T	145668045	1	4	9	0	1	0	0	0	0	0	0	0	10477	1131	39	1		1	NFKBIL2	8	145668045	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42230	145668045	695977	9885	18036											
KIFC2	90990	broad.mit.edu	37	chr8	145692565	145692565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctttcacagccctgctcGgattcttgtctccttcgcag	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145692565	T	T	145692565	1	4	9	0	1	0	0	0	0	0	0	0	8383	1131	39	1		1	KIFC2	8	145692565	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24520	145692565	671457	9886	18037											
MFSD3	113655	broad.mit.edu	37	chr8	145736532	145736532	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacctggacctagcaccCagcacctttctctgagctga	8	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145736532	A	A	145736532	2	1	9	1	0	0	0	0	0	0	0	1	9625	581	21	2		2	MFSD3	8	145736532	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43967	145736532	627490	9887	18038											
RECQL4	9401	broad.mit.edu	37	chr8	145737210	145737210	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcttcctctgagctccCgtggcactgcatccacagag	10	15	2	2	rs34375336		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145737210	G	G	145737210	1	3	9	0	1	0	0	0	0	0	0	0	13310	667	23	4		4	RECQL4	8	145737210	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	678	145737210	626812	9888	18039											
ZNF251	90987	broad.mit.edu	37	chr8	145947302	145947302	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcattatctgatcttcagtGggtcgtgaggtgggactgaa	14	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145947302	T	T	145947302	2	4	9	1	0	0	0	0	0	0	0	1	17922	1335	47	2		2	ZNF251	8	145947302	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	210092	145947302	416720	9889	18040											
ZNF251	90987	broad.mit.edu	37	chr8	145948194	145948194	+	Missense_Mutation	SNP	C	A	A													tttctccagtgtgaattctcCgatgaagacggaggtgagaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145948194	A	A	145948194	3	1	9	1	0	0	0	0	1	0	0	0	17922	652	23	1	1168	1	ZNF251	8	145948194	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	892	145948194	415828	9890	18041	118	2									
ZNF251	90987	broad.mit.edu	37	chr8	145948204	145948204	+	Missense_Mutation	SNP	G	T	T													gtgaattctccgatgaagacGgaggtgagaattgagtccaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145948204	T	T	145948204	3	4	9	1	0	0	0	0	1	0	0	0	17922	1116	39	1	1178	1	ZNF251	8	145948204	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	145948204	415818	9891	18042	118	2									
ZNF251	90987	broad.mit.edu	37	chr8	145948517	145948517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcttgggttctttctccCaaagatctttccctgcccac	5	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145948517	A	A	145948517	3	1	9	1	0	0	0	0	1	0	0	0	17922	593	21	2	1491	2	ZNF251	8	145948517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	313	145948517	415505	9892	18043											
ZNF7	7553	broad.mit.edu	37	chr8	146066909	146066909	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtcatctgggcagtccCgggctgaaagtgacaggctt	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146066909	A	A	146066909	2	1	9	1	0	0	0	0	0	0	0	1	18229	639	23	1		1	ZNF7	8	146066909	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	118392	146066909	297113	9893	18044											
ZNF7	7553	broad.mit.edu	37	chr8	146067311	146067311	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcagagaatccacacGggagagaaaccctttaaatg	9	10	1	2	rs142068099		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146067311	T	T	146067311	2	4	9	1	0	0	0	0	0	0	0	1	18229	1103	39	1		1	ZNF7	8	146067311	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	402	146067311	296711	9894	18045											
ZNF16	7564	broad.mit.edu	37	chr8	146156721	146156721	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgtacggcttctctccCgtgtggatgatctggtgctt	11	11	3	1	rs115193808	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146156721	A	A	146156721	2	1	9	1	0	0	0	0	0	0	0	1	17864	639	23	1		1	ZNF16	8	146156721	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	89410	146156721	207301	9895	18046											
C8orf33	65265	broad.mit.edu	37	chr8	146279398	146279398	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatacgctgcttctctcccCgacagctgcttattcagccc	6	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146279398	A	A	146279398	1	1	9	0	1	0	0	0	0	0	0	0	2447	667	23	1		1	C8orf33	8	146279398	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	122677	146279398	84624	9896	18047											
CBWD1	55871	broad.mit.edu	37	chr9	172056	172056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcacagaactatattctGgttattaataatctcacttc	3	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172056	T	T	172056	1	4	9	0	1	0	0	0	0	0	0	0	2738	1363	47	2		2	CBWD1	9	172056	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08		172056	141041375	9897	18048											
DOCK8	81704	broad.mit.edu	37	chr9	340306	340306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacgagaagtatatgtccCtcacactgtgtacaggtaag	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	340306	A	A	340306	3	1	9	1	0	0	0	0	1	0	0	0	4733	681	24	2	1718	2	DOCK8	9	340306	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168250	340306	140873125	9898	18049											
DOCK8	81704	broad.mit.edu	37	chr9	396825	396825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtacataacatggacaaacGggacagttttcggaggactc	11	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	396825	T	T	396825	3	4	9	1	0	0	0	0	1	0	0	0	4733	1116	39	1	3109	1	DOCK8	9	396825	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56519	396825	140816606	9899	18050											
DOCK8	81704	broad.mit.edu	37	chr9	406999	406999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgatctgacttccgagtacCgccagcagcacttcctcacc	7	17	2	1	rs34390308	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	406999	A	A	406999	3	1	9	1	0	0	0	0	1	0	0	0	4733	652	23	1	3570	1	DOCK8	9	406999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10174	406999	140806432	9900	18051											
DOCK8	81704	broad.mit.edu	37	chr9	432322	432322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgactccttttcccaccCaggtacaccgaagcacatac	6	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	432322	A	A	432322	3	1	9	1	0	0	0	0	1	0	0	0	4733	595	21	2	4929	2	DOCK8	9	432322	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25323	432322	140781109	9901	18052											
DMRT2	10655	broad.mit.edu	37	chr9	1056235	1056235	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctatcgccccattccagcGgagacttatgtaggagggac	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1056235	T	T	1056235	2	4	9	1	0	0	0	0	0	0	0	1	4626	1103	39	1		1	DMRT2	9	1056235	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	623913	1056235	140157196	9902	18053											
KIAA0020	9933	broad.mit.edu	37	chr9	2812265	2812265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagaacttcaatgatttctCgtactgtatgtgcaggatct	9	8	3	2	rs141380780	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2812265	A	A	2812265	3	1	9	1	0	0	0	0	1	0	0	0	8222	884	31	3	599	3	KIAA0020	9	2812265	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1756030	2812265	138401166	9903	18054											
SLC1A1	6505	broad.mit.edu	37	chr9	4583122	4583122	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattgtgctgagtgccgtGggcctgcccgccgaggatgt	17	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4583122	T	T	4583122	2	4	9	1	0	0	0	0	0	0	0	1	14544	1335	47	2		2	SLC1A1	9	4583122	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1770857	4583122	136630309	9904	18055											
C9orf68	55064	broad.mit.edu	37	chr9	4618076	4618076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatgatgatgagtcactcCttaaaacaatccgttcatct	5	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4618076	A	A	4618076	3	1	9	1	0	0	0	0	1	0	0	0	2517	681	24	2	348	2	C9orf68	9	4618076	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34954	4618076	136595355	9905	18056											
RCL1	10171	broad.mit.edu	37	chr9	4826984	4826984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccatttatgaagcaccCgttaaaaatagttctacgag	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4826984	A	A	4826984	3	1	9	1	0	0	0	0	1	0	0	0	13286	652	23	1	345	1	RCL1	9	4826984	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	208908	4826984	136386447	9906	18057											
KIAA1432	57589	broad.mit.edu	37	chr9	5753311	5753311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcattctgggaagagccCttcagtgggtgtactgagaa	15	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5753311	A	A	5753311	1	1	9	0	1	0	0	0	0	0	0	0	8303	696	24	2		2	KIAA1432	9	5753311	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	926327	5753311	135460120	9907	18058											
KIAA1432	57589	broad.mit.edu	37	chr9	5763201	5763201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgtctggacaacgtgtcGagcaaataaacagaaacgtc	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5763201	T	T	5763201	3	4	9	1	0	0	0	0	1	0	0	0	8303	1058	37	3	2007	3	KIAA1432	9	5763201	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9890	5763201	135450230	9908	18059											
KIAA1432	57589	broad.mit.edu	37	chr9	5763327	5763327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattccttcttgtcccagcGgatcatgctgcctttccaca	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5763327	T	T	5763327	3	4	9	1	0	0	0	0	1	0	0	0	8303	1116	39	1	2133	1	KIAA1432	9	5763327	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126	5763327	135450104	9909	18060											
KIAA2026	158358	broad.mit.edu	37	chr9	5920546	5920546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtattagttattttacctGgacttgttgaaagggacgac	10	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5920546	T	T	5920546	3	4	9	1	0	0	0	0	1	0	0	0	8340	1348	47	2	865	2	KIAA2026	9	5920546	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	157219	5920546	135292885	9910	18061											
KIAA2026	158358	broad.mit.edu	37	chr9	5921331	5921331	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatttttattggtgtgccCactgtagacggaatcagtac	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5921331	A	A	5921331	2	1	9	1	0	0	0	0	0	0	0	1	8340	581	21	2		2	KIAA2026	9	5921331	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	785	5921331	135292100	9911	18062											
KIAA2026	158358	broad.mit.edu	37	chr9	5924840	5924840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatagtctttcttcaggCggctcctgaaataaaatgcc	7	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5924840	A	A	5924840	3	1	9	1	0	0	0	0	1	0	0	0	8340	768	27	3	3815	3	KIAA2026	9	5924840	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3509	5924840	135288591	9912	18063											
GLDC	2731	broad.mit.edu	37	chr9	6553473	6553473	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgctttagtgaaatgacGggatgattgggcaaaaacgg	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6553473	T	T	6553473	2	4	9	1	0	0	0	0	0	0	0	1	6497	1103	39	1		1	GLDC	9	6553473	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	628633	6553473	134659958	9913	18064											
KDM4C	23081	broad.mit.edu	37	chr9	6984136	6984136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatccattgcagacatccCgctctgaccactgcttctct	5	16	2	2	rs75111462	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6984136	A	A	6984136	1	1	9	0	1	0	0	0	0	0	0	0	8200	667	23	1		1	KDM4C	9	6984136	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	430663	6984136	134229295	9914	18065											
KDM4C	23081	broad.mit.edu	37	chr9	7174610	7174610	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagcagacattatccaaGgggagagaaagagacaaaga	13	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7174610	T	T	7174610	3	4	9	1	0	0	0	0	1	0	0	0	8200	1000	35	2	3376	2	KDM4C	9	7174610	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	190474	7174610	134038821	9915	18066											
PTPRD	5789	broad.mit.edu	37	chr9	8338951	8338951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaccttgaattcccttaGgatatactgtggcatgttgt	10	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8338951	T	T	8338951	3	4	9	1	0	0	0	0	1	0	0	0	12907	991	35	2	404	2	PTPRD	9	8338951	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1164341	8338951	132874480	9916	18067											
PTPRD	5789	broad.mit.edu	37	chr9	8341729	8341729	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctgtgacattctctccCgtttctatttgtgtcagctt	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8341729	A	A	8341729	2	1	9	1	0	0	0	0	0	0	0	1	12907	639	23	1		1	PTPRD	9	8341729	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2778	8341729	132871702	9917	18068											
PTPRD	5789	broad.mit.edu	37	chr9	8636819	8636819	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacccctgtctgatcaacGggtgttcgtgtaaaccttgg	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8636819	T	T	8636819	2	4	9	1	0	0	0	0	0	0	0	1	12907	1103	39	1		1	PTPRD	9	8636819	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	295090	8636819	132576612	9918	18069											
MPDZ	8777	broad.mit.edu	37	chr9	13188783	13188783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaagtctgaattcttacGggtaaaggcttagcaactcc	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13188783	T	T	13188783	2	4	9	1	0	0	0	0	0	0	0	1	9816	1130	39	1		1	MPDZ	9	13188783	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4551964	13188783	128024648	9919	18070											
FREM1	158326	broad.mit.edu	37	chr9	14807978	14807978	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttgtctactgggtatacCgtgatgttgagatcatacac	11	7	2	2	rs61732546	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14807978	A	A	14807978	2	1	9	1	0	0	0	0	0	0	0	1	6104	639	23	1		1	FREM1	9	14807978	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1619195	14807978	126405453	9920	18071											
PSIP1	11168	broad.mit.edu	37	chr9	15469258	15469261	+	Intron	DEL	ACTT	-	-													agtattaaatgaagttaaacActtacaagattatcaatttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15469261	-	-	15469258	6	5	9	0	1	1	0	1	0	0	0	0	12769	174	6	0		0	PSIP1	9	15469258	Intron	DEL	ACTT	TCGA-05-4396-01A-21D-1855-08	661280	15469258	125744173	9921	18072											
PSIP1	11168	broad.mit.edu	37	chr9	15486852	15486852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctttttcttcatggtcGgtatcttcctttgaaacact	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15486852	T	T	15486852	2	4	9	1	0	0	0	0	0	0	0	1	12769	1103	39	1		1	PSIP1	9	15486852	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17594	15486852	125726579	9922	18073											
BNC2	54796	broad.mit.edu	37	chr9	16436508	16436508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttgtacagtctttagccCagaaaatactagctggctag	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16436508	A	A	16436508	3	1	9	1	0	0	0	0	1	0	0	0	1481	594	21	2	1623	2	BNC2	9	16436508	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	949656	16436508	124776923	9923	18074											
CNTLN	54875	broad.mit.edu	37	chr9	17330768	17330768	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaacaagggtttctccCgaaagagcatcatgacaagt	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17330768	A	A	17330768	2	1	9	1	0	0	0	0	0	0	0	1	3671	644	23	1		1	CNTLN	9	17330768	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	894260	17330768	123882663	9924	18075											
CNTLN	54875	broad.mit.edu	37	chr9	17416151	17416151	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatcaacagcaagtatcCgatcaacgatttcagacaag	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17416151	A	A	17416151	2	1	9	1	0	0	0	0	0	0	0	1	3671	639	23	1		1	CNTLN	9	17416151	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85383	17416151	123797280	9925	18076											
CNTLN	54875	broad.mit.edu	37	chr9	17464545	17464545	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagacatttgatagaggActtgaaatttcgacagaaag	10	4	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17464545	G	G	17464545	3	3	9	1	0	0	0	0	1	0	0	0	3671	275	10	5	3567	5	CNTLN	9	17464545	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	48394	17464545	123748886	9926	18077											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18622304	18622304	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataactgtggggtctgcaacGgagatgggtccacctgccgg	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18622304	T	T	18622304	4	4	9	1	0	0	0	0	0	1	0	0	274	1117	39	1	556	1	ADAMTSL1	9	18622304	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1157759	18622304	122591127	9927	18078											
MLLT3	4300	broad.mit.edu	37	chr9	20413990	20413990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagaatctgaaatgggcGgccttttactaggagccttc	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20413990	T	T	20413990	3	4	9	1	0	0	0	0	1	0	0	0	9721	1116	39	1	880	1	MLLT3	9	20413990	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1791686	20413990	120799441	9928	18079											
KIAA1797	54914	broad.mit.edu	37	chr9	20874806	20874806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccctttggttttaccaGgtgactcctatttggtagta	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20874806	T	T	20874806	3	4	9	1	0	0	0	0	1	0	0	0	8328	1014	35	2	2387	2	KIAA1797	9	20874806	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	460816	20874806	120338625	9929	18080											
PTPLAD2	401494	broad.mit.edu	37	chr9	21026731	21026731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccattgaatctgtatccCgtgggttaaaaatgcagata	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21026731	A	A	21026731	1	1	9	0	1	0	0	0	0	0	0	0	12882	667	23	1		1	PTPLAD2	9	21026731	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	151925	21026731	120186700	9930	18081											
IFNA7	3444	broad.mit.edu	37	chr9	21202032	21202032	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaaggagagattcttcCcatttgtgccaggagtatca	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21202032	A	A	21202032	4	1	9	1	0	0	0	0	0	1	0	0	7612	632	22	2	440	2	IFNA7	9	21202032	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175301	21202032	120011399	9931	18082											
IFNA14	3448	broad.mit.edu	37	chr9	21239412	21239412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtttgttgaaaaagagaGggatctcatgatttctgctc	10	6	2	3	rs702212		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21239412	T	T	21239412	3	4	9	1	0	0	0	0	1	0	0	0	7604	1000	35	2	50	2	IFNA14	9	21239412	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37380	21239412	119974019	9932	18083											
IFNA14	3448	broad.mit.edu	37	chr9	21239453	21239453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaacctcccaggcacaaGggctgtatttcttctccatc	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21239453	T	T	21239453	3	4	9	1	0	0	0	0	1	0	0	0	7604	1000	35	2	91	2	IFNA14	9	21239453	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41	21239453	119973978	9933	18084											
C9orf82	79886	broad.mit.edu	37	chr9	26884865	26884865	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcttcctcttccatatcaGagtccattccattgtcacct	4	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26884865	T	T	26884865	3	4	9	1	0	0	0	0	1	0	0	0	2525	942	33	3	489	3	C9orf82	9	26884865	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5645412	26884865	114328566	9934	18085											
MOBKL2B	79817	broad.mit.edu	37	chr9	27359174	27359174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatagacgtggacaaagaccCggaaaaggcggcacaggatc	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27359174	A	A	27359174	3	1	9	1	0	0	0	0	1	0	0	0	9779	652	23	1	179	1	MOBKL2B	9	27359174	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	474309	27359174	113854257	9935	18086											
TOPORS	10210	broad.mit.edu	37	chr9	32541936	32541936	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctctacacttaggctccGggtcttcctttttctccttt	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32541936	T	T	32541936	2	4	9	1	0	0	0	0	0	0	0	1	16494	1115	39	1		1	TOPORS	9	32541936	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5182762	32541936	108671495	9936	18087											
TAF1L	138474	broad.mit.edu	37	chr9	32632457	32632457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatcaatcacttcccagcGggacaactttttaatctctt	4	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32632457	T	T	32632457	3	4	9	1	0	0	0	0	1	0	0	0	15642	1116	39	1	2363	1	TAF1L	9	32632457	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90521	32632457	108580974	9937	18088											
TAF1L	138474	broad.mit.edu	37	chr9	32634374	32634374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcaagtttcctaaattcctCcatcattctagattttatca	2	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32634374	T	T	32634374	3	4	9	1	0	0	0	0	1	0	0	0	15642	864	30	4	4280	4	TAF1L	9	32634374	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1917	32634374	108579057	9938	18089											
TAF1L	138474	broad.mit.edu	37	chr9	32634453	32634453	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaacccactgccatcttcGgagacacccagcatatcata	5	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32634453	T	T	32634453	2	4	9	1	0	0	0	0	0	0	0	1	15642	1103	39	1		1	TAF1L	9	32634453	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	79	32634453	108578978	9939	18090											
TAF1L	138474	broad.mit.edu	37	chr9	32634751	32634751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctttctccgagcactcCgccaaacagatgggacattc	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32634751	A	A	32634751	3	1	9	1	0	0	0	0	1	0	0	0	15642	652	23	1	4657	1	TAF1L	9	32634751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	298	32634751	108578680	9940	18091											
TAF1L	138474	broad.mit.edu	37	chr9	32635434	32635434	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccccctccagctgcccCgctccactgatgttgccgaa	7	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32635434	A	A	32635434	2	1	9	1	0	0	0	0	0	0	0	1	15642	639	23	1		1	TAF1L	9	32635434	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	683	32635434	108577997	9941	18092											
APTX	54840	broad.mit.edu	37	chr9	32985884	32985884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcagaaagactgatatcCtttgatttcatttgtaatta	5	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32985884	A	A	32985884	1	1	9	0	1	0	0	0	0	0	0	0	822	696	24	2		2	APTX	9	32985884	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	350450	32985884	108227547	9942	18093											
SMU1	55234	broad.mit.edu	37	chr9	33071822	33071822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgttttaacatgatcatGggatcagtctgtctcaaaag	9	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33071822	T	T	33071822	2	4	9	1	0	0	0	0	0	0	0	1	14931	1335	47	2		2	SMU1	9	33071822	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85938	33071822	108141609	9943	18094											
B4GALT1	2683	broad.mit.edu	37	chr9	33113830	33113830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggatcatgcgacacctccCgaccacagcatttgggcgag	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33113830	A	A	33113830	3	1	9	1	0	0	0	0	1	0	0	0	1275	652	23	1	198	1	B4GALT1	9	33113830	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42008	33113830	108099601	9944	18095											
CHMP5	51510	broad.mit.edu	37	chr9	33265117	33265117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaaacccaaggctccgcCgcccagcctgactgactgca	10	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33265117	A	A	33265117	3	1	9	1	0	0	0	0	1	0	0	0	3390	652	23	1	43	1	CHMP5	9	33265117	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151287	33265117	107948314	9945	18096											
CHMP5	51510	broad.mit.edu	37	chr9	33270635	33270635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggtatgagcagcagcGggacaatcttgcccaacagt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33270635	T	T	33270635	3	4	9	1	0	0	0	0	1	0	0	0	3390	1116	39	1	250	1	CHMP5	9	33270635	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5518	33270635	107942796	9946	18097											
NFX1	4799	broad.mit.edu	37	chr9	33294985	33294985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagtaaccgaacaactcCaaaaccggaggatgctggac	11	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33294985	A	A	33294985	3	1	9	1	0	0	0	0	1	0	0	0	10482	594	21	2	599	2	NFX1	9	33294985	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24350	33294985	107918446	9947	18098											
AQP7	364	broad.mit.edu	37	chr9	33384952	33384952	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgggggtactgctgtcGgacaagccttgctttattgg	15	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33384952	T	T	33384952	1	4	9	0	1	0	0	0	0	0	0	0	833	1131	39	1		1	AQP7	9	33384952	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	89967	33384952	107828479	9948	18099											
NOL6	65083	broad.mit.edu	37	chr9	33472051	33472051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccgctggttgacctccCgtaggaaggcatcaatccga	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33472051	A	A	33472051	3	1	9	1	0	0	0	0	1	0	0	0	10620	652	23	1	3207	1	NOL6	9	33472051	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87099	33472051	107741380	9949	18100											
UBE2R2	54926	broad.mit.edu	37	chr9	33911969	33911969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgtttctaggactatcCtattaagtgtaatctcactg	6	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33911969	A	A	33911969	3	1	9	1	0	0	0	0	1	0	0	0	16997	680	24	2	384	2	UBE2R2	9	33911969	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	439918	33911969	107301462	9950	18101											
UBAP2	55833	broad.mit.edu	37	chr9	33944408	33944408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcaagtttgatgtgtttGggctgtggctggtggacaga	16	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33944408	T	T	33944408	2	4	9	1	0	0	0	0	0	0	0	1	16963	1335	47	2		2	UBAP2	9	33944408	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32439	33944408	107269023	9951	18102											
UBAP2	55833	broad.mit.edu	37	chr9	33948493	33948493	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggtaaactggcccaaactCggagctttcaactggtccaa	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33948493	A	A	33948493	2	1	9	1	0	0	0	0	0	0	0	1	16963	871	31	3		3	UBAP2	9	33948493	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4085	33948493	107264938	9952	18103											
UBAP2	55833	broad.mit.edu	37	chr9	33971702	33971702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaactactagctttgtcCcacacacatctgtagatgta	5	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33971702	A	A	33971702	3	1	9	1	0	0	0	0	1	0	0	0	16963	623	22	2	2821	2	UBAP2	9	33971702	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23209	33971702	107241729	9953	18104											
UBAP2	55833	broad.mit.edu	37	chr9	33986798	33986798	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgatctgaaggtttgtcCacttgattgcaatcaattcc	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33986798	A	A	33986798	2	1	9	1	0	0	0	0	0	0	0	1	16963	581	21	2		2	UBAP2	9	33986798	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15096	33986798	107226633	9954	18105											
DCAF12	25853	broad.mit.edu	37	chr9	34098434	34098434	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgcatacacagggaccCgtgacacattgtgtctcgca	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34098434	G	G	34098434	3	3	9	1	0	0	0	0	1	0	0	0	4296	652	23	4	698	4	DCAF12	9	34098434	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111636	34098434	107114997	9955	18106											
KIF24	347240	broad.mit.edu	37	chr9	34242126	34242126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagtcttttaaatccccCgccgactcccatattttcct	5	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34242126	A	A	34242126	1	1	9	0	1	0	0	0	0	0	0	0	8362	667	23	1		1	KIF24	9	34242126	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	143692	34242126	106971305	9956	18107											
KIF24	347240	broad.mit.edu	37	chr9	34257580	34257580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggacagttttgttgccCattcgatttttctcagagca	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34257580	A	A	34257580	3	1	9	1	0	0	0	0	1	0	0	0	8362	594	21	2	2093	2	KIF24	9	34257580	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15454	34257580	106955851	9957	18108											
KIAA1161	57462	broad.mit.edu	37	chr9	34372822	34372822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaggtgagaagttgtcGggcaggaaggtgtacatagc	17	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34372822	T	T	34372822	2	4	9	1	0	0	0	0	0	0	0	1	8281	1103	39	1		1	KIAA1161	9	34372822	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	115242	34372822	106840609	9958	18109											
C9orf25	203259	broad.mit.edu	37	chr9	34402390	34402390	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccccatacacacctgtcCgtgtcaagggctaccagtgg	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34402390	A	A	34402390	2	1	9	1	0	0	0	0	0	0	0	1	2502	639	23	1		1	C9orf25	9	34402390	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29568	34402390	106811041	9959	18110											
C9orf25	203259	broad.mit.edu	37	chr9	34402796	34402796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccttccgggccagctccCgctgcttctctgcaggagaa	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34402796	A	A	34402796	3	1	9	1	0	0	0	0	1	0	0	0	2502	652	23	1	403	1	C9orf25	9	34402796	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	406	34402796	106810635	9960	18111											
GALT	2592	broad.mit.edu	37	chr9	34649059	34649059	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgagacgtcctttccCtactccatgggctggcatgg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34649059	A	A	34649059	2	1	9	1	0	0	0	0	0	0	0	1	6292	668	24	2		2	GALT	9	34649059	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	246263	34649059	106564372	9961	18112											
C9orf131	138724	broad.mit.edu	37	chr9	35043106	35043106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaaacagtcatgcagccCgtgagcccttccagatcctt	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35043106	A	A	35043106	2	1	9	1	0	0	0	0	0	0	0	1	2483	639	23	1		1	C9orf131	9	35043106	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	394047	35043106	106170325	9962	18113											
C9orf131	138724	broad.mit.edu	37	chr9	35043185	35043185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagatagcatcagggaacCgccagcagcagagaaaaagc	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35043185	A	A	35043185	3	1	9	1	0	0	0	0	1	0	0	0	2483	652	23	1	581	1	C9orf131	9	35043185	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	35043185	106170246	9963	18114											
C9orf131	138724	broad.mit.edu	37	chr9	35045237	35045237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacttccaatcctcttccCagcttcagccacaggagtct	5	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35045237	A	A	35045237	3	1	9	1	0	0	0	0	1	0	0	0	2483	595	21	2	2633	2	C9orf131	9	35045237	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2052	35045237	106168194	9964	18115											
VCP	7415	broad.mit.edu	37	chr9	35057391	35057391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaagctgccaaagcccCgactctgctgaagggtctgg	12	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35057391	A	A	35057391	3	1	9	1	0	0	0	0	1	0	0	0	17267	652	23	1	131	1	VCP	9	35057391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12154	35057391	106156040	9965	18116											
VCP	7415	broad.mit.edu	37	chr9	35057404	35057404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccccgactctgctgaaGggtctgggcaaacatctcat	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35057404	T	T	35057404	3	4	9	1	0	0	0	0	1	0	0	0	17267	1000	35	2	144	2	VCP	9	35057404	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	35057404	106156027	9966	18117											
VCP	7415	broad.mit.edu	37	chr9	35060997	35060997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgtgtacctgaggcacGggtgtggtccttacccggaa	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35060997	T	T	35060997	1	4	9	0	1	0	0	0	0	0	0	0	17267	1131	39	1		1	VCP	9	35060997	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3593	35060997	106152434	9967	18118											
VCP	7415	broad.mit.edu	37	chr9	35061090	35061090	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctaggtcaatgagatcCatcttcttgcggatggcttg	10	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35061090	A	A	35061090	3	1	9	1	0	0	0	0	1	0	0	0	17267	594	21	2	1167	2	VCP	9	35061090	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	35061090	106152341	9968	18119											
VCP	7415	broad.mit.edu	37	chr9	35062938	35062938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataagcccagttcaaaattGggtctagctagacataagat	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35062938	T	T	35062938	1	4	9	0	1	0	0	0	0	0	0	0	17267	1363	47	2		2	VCP	9	35062938	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1848	35062938	106150493	9969	18120											
VCP	7415	broad.mit.edu	37	chr9	35064134	35064134	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccactttagacttgattccaGagcccaggatgctcaccttc	7	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35064134	T	T	35064134	1	4	9	0	1	0	0	0	0	0	0	0	17267	957	33	3		3	VCP	9	35064134	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1196	35064134	106149297	9970	18121											
PIGO	84720	broad.mit.edu	37	chr9	35090136	35090136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtgctgaggcgcatccCggagccgcatctccatcagt	12	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35090136	A	A	35090136	3	1	9	1	0	0	0	0	1	0	0	0	11989	652	23	1	285	1	PIGO	9	35090136	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26002	35090136	106123295	9971	18122											
STOML2	30968	broad.mit.edu	37	chr9	35101553	35101553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggcattcagggactccCgttcctggaaaaagaggtgt	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35101553	A	A	35101553	3	1	9	1	0	0	0	0	1	0	0	0	15432	652	23	1	641	1	STOML2	9	35101553	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11417	35101553	106111878	9972	18123											
UNC13B	10497	broad.mit.edu	37	chr9	35295660	35295660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaactaaataaagctGgggtgctttgattgaatgtg	12	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35295660	T	T	35295660	1	4	9	0	1	0	0	0	0	0	0	0	17111	1363	47	2		2	UNC13B	9	35295660	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	194107	35295660	105917771	9973	18124											
UNC13B	10497	broad.mit.edu	37	chr9	35382336	35382336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagagtctttgaggctgcGggtgctgtgtttttcaggca	15	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35382336	T	T	35382336	1	4	9	0	1	0	0	0	0	0	0	0	17111	1131	39	1		1	UNC13B	9	35382336	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	86676	35382336	105831095	9974	18125											
UNC13B	10497	broad.mit.edu	37	chr9	35399659	35399659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaacaggatcacatggtacGagaggaaacacggaatctca	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35399659	T	T	35399659	3	4	9	1	0	0	0	0	1	0	0	0	17111	1058	37	3	4160	3	UNC13B	9	35399659	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17323	35399659	105813772	9975	18126											
UNC13B	10497	broad.mit.edu	37	chr9	35400426	35400426	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcaagacctttgtgcgctCgcagaccacccaaggtaagg	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35400426	A	A	35400426	4	1	9	1	0	0	0	0	0	1	0	0	17111	893	31	3	4365	3	UNC13B	9	35400426	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	767	35400426	105813005	9976	18127											
RUSC2	9853	broad.mit.edu	37	chr9	35559974	35559974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctttcaaagtcccacttGggccaggctctggttctctg	10	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35559974	T	T	35559974	1	4	9	0	1	0	0	0	0	0	0	0	13862	1363	47	2		2	RUSC2	9	35559974	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	159548	35559974	105653457	9977	18128											
TESK1	7016	broad.mit.edu	37	chr9	35607432	35607432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaatgtccctgttcccccCaaatctcccagagtgcccct	6	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35607432	A	A	35607432	1	1	9	0	1	0	0	0	0	0	0	0	15889	609	21	2		2	TESK1	9	35607432	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47458	35607432	105605999	9978	18129											
TESK1	7016	broad.mit.edu	37	chr9	35607943	35607943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgatgtctttgccttcGggattgtcctctgtgagctc	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35607943	T	T	35607943	3	4	9	1	0	0	0	0	1	0	0	0	15889	1116	39	1	756	1	TESK1	9	35607943	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	511	35607943	105605488	9979	18130											
CCDC107	203260	broad.mit.edu	37	chr9	35660827	35660827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcaagatagcaagccGgacaaggatatggaggcttc	13	9	0	1	rs145670939		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35660827	T	T	35660827	2	4	9	1	0	0	0	0	0	0	0	1	2768	1103	39	1		1	CCDC107	9	35660827	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	52884	35660827	105552604	9980	18131											
CA9	768	broad.mit.edu	37	chr9	35676297	35676297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtgtccttttcagatcCacgtggttcacctcagcacc	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35676297	A	A	35676297	3	1	9	1	0	0	0	0	1	0	0	0	2550	594	21	2	769	2	CA9	9	35676297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15470	35676297	105537134	9981	18132											
TPM2	7169	broad.mit.edu	37	chr9	35684615	35684615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatttctccattgtacccCgtaggctcctggtcatcttg	7	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35684615	A	A	35684615	1	1	9	0	1	0	0	0	0	0	0	0	16530	667	23	1		1	TPM2	9	35684615	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8318	35684615	105528816	9982	18133											
TPM2	7169	broad.mit.edu	37	chr9	35685445	35685445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcacctcttcatatttgcGgtctgaatcctcagcgatgt	8	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35685445	T	T	35685445	3	4	9	1	0	0	0	0	1	0	0	0	16530	1116	39	1	567	1	TPM2	9	35685445	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	830	35685445	105527986	9983	18134											
TLN1	7094	broad.mit.edu	37	chr9	35706785	35706785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgagagattccctcacGgggagcaagctgctggctga	13	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35706785	T	T	35706785	3	4	9	1	0	0	0	0	1	0	0	0	16070	1116	39	1	2637	1	TLN1	9	35706785	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21340	35706785	105506646	9984	18135											
TLN1	7094	broad.mit.edu	37	chr9	35711774	35711774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcttcttgaaatgtccCagtgctaggaggaagctgca	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35711774	A	A	35711774	3	1	9	1	0	0	0	0	1	0	0	0	16070	594	21	2	4044	2	TLN1	9	35711774	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4989	35711774	105501657	9985	18136											
TLN1	7094	broad.mit.edu	37	chr9	35716452	35716452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcacttaagagcttgcGggagttctccagatcacttt	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35716452	T	T	35716452	3	4	9	1	0	0	0	0	1	0	0	0	16070	1116	39	1	5217	1	TLN1	9	35716452	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4678	35716452	105496979	9986	18137											
CREB3	10488	broad.mit.edu	37	chr9	35735280	35735280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatacaggccatatcccCgtatctttgttatttccccc	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35735280	A	A	35735280	1	1	9	0	1	0	0	0	0	0	0	0	3887	667	23	1		1	CREB3	9	35735280	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18828	35735280	105478151	9987	18138											
GBA2	57704	broad.mit.edu	37	chr9	35738744	35738744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccactgcatgtgcatccCttactagacacacaggccac	8	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35738744	A	A	35738744	1	1	9	0	1	0	0	0	0	0	0	0	6329	696	24	2		2	GBA2	9	35738744	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3464	35738744	105474687	9988	18139											
GBA2	57704	broad.mit.edu	37	chr9	35740420	35740420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccagggatagggatccCtaacatggaaacaaggccta	11	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35740420	A	A	35740420	1	1	9	0	1	0	0	0	0	0	0	0	6329	696	24	2		2	GBA2	9	35740420	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1676	35740420	105473011	9989	18140											
NPR2	4882	broad.mit.edu	37	chr9	35792771	35792771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccttcccctgctgactgcGggtgctgtggcctctggttt	13	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35792771	T	T	35792771	2	4	9	1	0	0	0	0	0	0	0	1	10690	1103	39	1		1	NPR2	9	35792771	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	52351	35792771	105420660	9990	18141											
NPR2	4882	broad.mit.edu	37	chr9	35799693	35799693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtctgctgataagagccCgggaagactttggtgtggag	15	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35799693	A	A	35799693	2	1	9	1	0	0	0	0	0	0	0	1	10690	643	23	1		1	NPR2	9	35799693	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6922	35799693	105413738	9991	18142											
NPR2	4882	broad.mit.edu	37	chr9	35800103	35800103	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatacaggaaggaggcaccCgggaggatggacttcgaatt	14	8	0	0	rs140870470		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35800103	A	A	35800103	2	1	9	1	0	0	0	0	0	0	0	1	10690	643	23	1		1	NPR2	9	35800103	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	410	35800103	105413328	9992	18143											
NPR2	4882	broad.mit.edu	37	chr9	35800424	35800424	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggacaagaacaatgacCgagagactgactttgtcctc	9	10	1	4	rs121912739		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35800424	A	A	35800424	2	1	9	1	0	0	0	0	0	0	0	1	10690	644	23	1		1	NPR2	9	35800424	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	321	35800424	105413007	9993	18144											
NPR2	4882	broad.mit.edu	37	chr9	35805689	35805689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggcccacccccacaaccCactttttatattgctcctct	4	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35805689	A	A	35805689	1	1	9	0	1	0	0	0	0	0	0	0	10690	609	21	2		2	NPR2	9	35805689	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5265	35805689	105407742	9994	18145											
SPAG8	26206	broad.mit.edu	37	chr9	35809980	35809980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccacccagccttcctccGggacagggaagggaagatat	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35809980	T	T	35809980	1	4	9	0	1	0	0	0	0	0	0	0	15100	1103	39	1		1	SPAG8	9	35809980	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4291	35809980	105403451	9995	18146											
SPAG8	26206	broad.mit.edu	37	chr9	35810561	35810561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctctttactatgtagccCgaggggtgtcaaggccattc	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35810561	A	A	35810561	1	1	9	0	1	0	0	0	0	0	0	0	15100	667	23	1		1	SPAG8	9	35810561	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	581	35810561	105402870	9996	18147											
SPAG8	26206	broad.mit.edu	37	chr9	35811953	35811953	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaagaaggaaacggttcCgaagtgggccccagtccttc	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35811953	A	A	35811953	2	1	9	1	0	0	0	0	0	0	0	1	15100	639	23	1		1	SPAG8	9	35811953	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1392	35811953	105401478	9997	18148											
C9orf128	392307	broad.mit.edu	37	chr9	35821588	35821588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcacaatgcaggtgggcGggagccaggattccactaga	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35821588	T	T	35821588	1	4	9	0	1	0	0	0	0	0	0	0	2481	1131	39	1		1	C9orf128	9	35821588	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9635	35821588	105391843	9998	18149											
TMEM8B	51754	broad.mit.edu	37	chr9	35852871	35852871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgtggttttctgcatcatGgactacgatgtgctgcagtt	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35852871	T	T	35852871	3	4	9	1	0	0	0	0	1	0	0	0	16338	1348	47	2	1087	2	TMEM8B	9	35852871	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31283	35852871	105360560	9999	18150											
RECK	8434	broad.mit.edu	37	chr9	36108008	36108008	+	Missense_Mutation	SNP	C	A	A													aagcttctgatttcattgtcCgtcaagggacactaatccag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36108008	A	A	36108008	3	1	9	1	0	0	0	0	1	0	0	0	13308	652	23	1	1666	1	RECK	9	36108008	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	255137	36108008	105105423	10000	18151	119	2									
RECK	8434	broad.mit.edu	37	chr9	36108015	36108015	+	Missense_Mutation	SNP	G	T	T													tgatttcattgtccgtcaagGgacactaatccaggtgccat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36108015	T	T	36108015	3	4	9	1	0	0	0	0	1	0	0	0	13308	1232	43	2	1673	2	RECK	9	36108015	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	36108015	105105416	10001	18152	119	2									
RECK	8434	broad.mit.edu	37	chr9	36110025	36110025	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatttggtgtgctctaccCgcctttgcctcagtgagcac	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36110025	A	A	36110025	3	1	9	1	0	0	0	0	1	0	0	0	13308	652	23	1	1895	1	RECK	9	36110025	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2010	36110025	105103406	10002	18153											
CCIN	881	broad.mit.edu	37	chr9	36170134	36170134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacttccggaaggaggatcGggagaagtatttcaagaagt	14	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36170134	T	T	36170134	3	4	9	1	0	0	0	0	1	0	0	0	2906	1116	39	1	637	1	CCIN	9	36170134	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60109	36170134	105043297	10003	18154											
GRHPR	9380	broad.mit.edu	37	chr9	37436696	37436696	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgccacccacagaaccCgcaacaccatgtccttgttg	8	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37436696	G	G	37436696	3	3	9	1	0	0	0	0	1	0	0	0	6832	652	23	4	938	4	GRHPR	9	37436696	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1266562	37436696	103776735	10004	18155											
FRMPD1	22844	broad.mit.edu	37	chr9	37692723	37692723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatggcttcggcgctccCgggacagctcggcccggtaa	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37692723	A	A	37692723	2	1	9	1	0	0	0	0	0	0	0	1	6117	643	23	1		1	FRMPD1	9	37692723	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	256027	37692723	103520708	10005	18156											
FRMPD1	22844	broad.mit.edu	37	chr9	37733513	37733513	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatatctccaactttactcCgaaacatgaaaggcaaagac	5	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37733513	A	A	37733513	2	1	9	1	0	0	0	0	0	0	0	1	6117	644	23	1		1	FRMPD1	9	37733513	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40790	37733513	103479918	10006	18157											
RG9MTD3	158234	broad.mit.edu	37	chr9	37770707	37770707	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacaaagtttacatcctcGgtgggcttgtggatgaaagc	11	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37770707	T	T	37770707	3	4	9	1	0	0	0	0	1	0	0	0	13381	1116	39	1	713	1	RG9MTD3	9	37770707	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37194	37770707	103442724	10007	18158											
DCAF10	79269	broad.mit.edu	37	chr9	37854945	37854945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagaagtaggcagctatccCattttaagagcaagaagaac	9	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37854945	A	A	37854945	2	1	9	1	0	0	0	0	0	0	0	1	4294	581	21	2		2	DCAF10	9	37854945	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84238	37854945	103358486	10008	18159											
DCAF10	79269	broad.mit.edu	37	chr9	37861381	37861381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagaagccagtcccctgcGggtgatccgttctctgtact	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37861381	T	T	37861381	3	4	9	1	0	0	0	0	1	0	0	0	4294	1116	39	1	1582	1	DCAF10	9	37861381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6436	37861381	103352050	10009	18160											
MCART1	92014	broad.mit.edu	37	chr9	37885951	37885951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgatgaggaactagaacGggacaacagggtcacttgga	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37885951	T	T	37885951	1	4	9	0	1	0	0	0	0	0	0	0	9462	1131	39	1		1	MCART1	9	37885951	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24570	37885951	103327480	10010	18161											
ALDH1B1	219	broad.mit.edu	37	chr9	38396086	38396086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcagacctagtggagcGggatcgagtctacttggcct	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38396086	T	T	38396086	3	4	9	1	0	0	0	0	1	0	0	0	493	1116	39	1	343	1	ALDH1B1	9	38396086	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	510135	38396086	102817345	10011	18162											
FAM75A2	642265	broad.mit.edu	37	chr9	39888168	39888168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaacccttctggaacatGggagagaactcgaaacagct	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39888168	T	T	39888168	3	4	9	1	0	0	0	0	1	0	0	0	5671	1348	47	2	5229	2	FAM75A2	9	39888168	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1492082	39888168	101325263	10012	18163											
FAM75A3	727830	broad.mit.edu	37	chr9	40702784	40702784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatggaagatgctgctccCattctctccctgttagcttc	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702784	A	A	40702784	2	1	9	1	0	0	0	0	0	0	0	1	5672	581	21	2		2	FAM75A3	9	40702784	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	814616	40702784	100510647	10013	18164											
FAM75A3	727830	broad.mit.edu	37	chr9	40702808	40702808	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccctgttagcttccccGgatcctcaagccaagcatcc	6	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40702808	T	T	40702808	2	4	9	1	0	0	0	0	0	0	0	1	5672	1103	39	1		1	FAM75A3	9	40702808	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	40702808	100510623	10014	18165											
ZNF658	26149	broad.mit.edu	37	chr9	40772565	40772565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atagggtttctcccctgagcGagttctaagatgtgctctga	11	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40772565	T	T	40772565	3	4	9	1	0	0	0	0	1	0	0	0	18196	1058	37	3	473	3	ZNF658	9	40772565	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69757	40772565	100440866	10015	18166											
ZNF658	26149	broad.mit.edu	37	chr9	40774449	40774449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttgtcacaggatgtccCatattcattaagatcagagc	9	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40774449	A	A	40774449	3	1	9	1	0	0	0	0	1	0	0	0	18196	594	21	2	2357	2	ZNF658	9	40774449	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1884	40774449	100438982	10016	18167											
FAM75A6	389730	broad.mit.edu	37	chr9	43624974	43624974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggaaacccacagactGgggcttgaaacttctgtttg	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43624974	T	T	43624974	3	4	9	1	0	0	0	0	1	0	0	0	5674	1348	47	2	322	2	FAM75A6	9	43624974	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2850525	43624974	97588457	10017	18168											
FAM75A6	389730	broad.mit.edu	37	chr9	43625066	43625066	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcatttgtccaactgcCgtcatgagaccctgagcttc	8	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43625066	A	A	43625066	2	1	9	1	0	0	0	0	0	0	0	1	5674	639	23	1		1	FAM75A6	9	43625066	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	43625066	97588365	10018	18169											
FAM75A6	389730	broad.mit.edu	37	chr9	43625351	43625351	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatgtttttctaagttGggcttcctagacttctcact	6	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43625351	T	T	43625351	2	4	9	1	0	0	0	0	0	0	0	1	5674	1335	47	2		2	FAM75A6	9	43625351	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	285	43625351	97588080	10019	18170											
FAM75A6	389730	broad.mit.edu	37	chr9	43627135	43627135	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgcagggcaagctactcCagtgttcttaatcagggatg	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627135	A	A	43627135	4	1	9	1	0	0	0	0	0	1	0	0	5674	603	21	2	2483	2	FAM75A6	9	43627135	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1784	43627135	97586296	10020	18171											
FAM75A6	389730	broad.mit.edu	37	chr9	43627207	43627207	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaagatgggcctgagcctCggcctgagccataggtgtgg	16	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627207	A	A	43627207	4	1	9	1	0	0	0	0	0	1	0	0	5674	893	31	3	2555	3	FAM75A6	9	43627207	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	43627207	97586224	10021	18172											
FAM75A6	389730	broad.mit.edu	37	chr9	43627237	43627237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataggtgtgggcaggaattGgggtgtggatgaaataaagg	18	2	0	1	rs142810770	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43627237	T	T	43627237	3	4	9	1	0	0	0	0	1	0	0	0	5674	1357	47	2	2585	2	FAM75A6	9	43627237	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	43627237	97586194	10022	18173											
FAM75A6	389730	broad.mit.edu	37	chr9	43627598	43627598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatttagccaaattcccCaaagaatttaagtgcttttc	5	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627598	A	A	43627598	3	1	9	1	0	0	0	0	1	0	0	0	5674	593	21	2	2946	2	FAM75A6	9	43627598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	361	43627598	97585833	10023	18174											
FAM75A6	389730	broad.mit.edu	37	chr9	43627703	43627703	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctgtgacttgtatcccCacgacattctggccatcaga	8	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627703	A	A	43627703	2	1	9	1	0	0	0	0	0	0	0	1	5674	581	21	2		2	FAM75A6	9	43627703	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	43627703	97585728	10024	18175											
FAM75A6	389730	broad.mit.edu	37	chr9	43627777	43627777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtctctggtgggtggcGggaaagaggatcttgctgga	18	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43627777	T	T	43627777	3	4	9	1	0	0	0	0	1	0	0	0	5674	1116	39	1	3125	1	FAM75A6	9	43627777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74	43627777	97585654	10025	18176											
FAM75A6	389730	broad.mit.edu	37	chr9	43630494	43630494	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatcaagctctgtgggtcGggactgagggttccttacct	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43630494	T	T	43630494	1	4	9	0	1	0	0	0	0	0	0	0	5674	1131	39	1		1	FAM75A6	9	43630494	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2717	43630494	97582937	10026	18177											
ANKRD20A3	441425	broad.mit.edu	37	chr9	67951943	67951943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttagcagtgtgtcccCgagaaagtgtcagagccttt	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67951943	A	A	67951943	2	1	9	1	0	0	0	0	0	0	0	1	649	639	23	1		1	ANKRD20A3	9	67951943	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24321449	67951943	73261488	10027	18178											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69385876	69385876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtttcttggtctaacacGgacaggctgtccattgccag	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69385876	T	T	69385876	1	4	9	0	1	0	0	0	0	0	0	0	650	1131	39	1		1	ANKRD20A4	9	69385876	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1433933	69385876	71827555	10028	18179											
FOXD4L5	653427	broad.mit.edu	37	chr9	70177146	70177146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgctttcttcggtgcccCggcatagacgggggccgaga	14	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70177146	A	A	70177146	3	1	9	1	0	0	0	0	1	0	0	0	6062	652	23	1	416	1	FOXD4L5	9	70177146	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	791270	70177146	71036285	10029	18180											
CBWD3	445571	broad.mit.edu	37	chr9	70871876	70871876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggttgatgctgaattagGgagtgatatttaccttgatg	13	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70871876	T	T	70871876	3	4	9	1	0	0	0	0	1	0	0	0	2740	1232	43	2	1736	2	CBWD3	9	70871876	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	694730	70871876	70341555	10030	18181											
PGM5	5239	broad.mit.edu	37	chr9	70993086	70993086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttaatcccaaggaactGgattgatttttttttttgga	9	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70993086	T	T	70993086	1	4	9	0	1	0	0	0	0	0	0	0	11896	1363	47	2		2	PGM5	9	70993086	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	121210	70993086	70220345	10031	18182											
PGM5	5239	broad.mit.edu	37	chr9	71006558	71006558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggcagcaccctgaccCaaacctgacatatgcaacga	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71006558	A	A	71006558	3	1	9	1	0	0	0	0	1	0	0	0	11896	594	21	2	824	2	PGM5	9	71006558	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13472	71006558	70206873	10032	18183											
PIP5K1B	8395	broad.mit.edu	37	chr9	71532530	71532530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatttcctggaccattccCtcaaagagaaagaggaggag	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71532530	A	A	71532530	3	1	9	1	0	0	0	0	1	0	0	0	12035	681	24	2	860	2	PIP5K1B	9	71532530	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	525972	71532530	69680901	10033	18184											
PIP5K1B	8395	broad.mit.edu	37	chr9	71532555	71532555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaagaggaggagacccCacaaaatgtgcctgatgcta	12	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71532555	A	A	71532555	3	1	9	1	0	0	0	0	1	0	0	0	12035	594	21	2	885	2	PIP5K1B	9	71532555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	71532555	69680876	10034	18185											
PIP5K1B	8395	broad.mit.edu	37	chr9	71549833	71549833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcaccgtctaagaaacGgtgcaattcaatcgccgccc	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71549833	T	T	71549833	3	4	9	1	0	0	0	0	1	0	0	0	12035	1116	39	1	1267	1	PIP5K1B	9	71549833	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17278	71549833	69663598	10035	18186											
PIP5K1B	8395	broad.mit.edu	37	chr9	71555566	71555566	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttcgttcctagccctGggatcccgacacaggccaga	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71555566	T	T	71555566	2	4	9	1	0	0	0	0	0	0	0	1	12035	1335	47	2		2	PIP5K1B	9	71555566	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5733	71555566	69657865	10036	18187											
PRKACG	5568	broad.mit.edu	37	chr9	71628059	71628059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagggcctgtgtacttcGggatgaagggagcttccacc	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71628059	T	T	71628059	3	4	9	1	0	0	0	0	1	0	0	0	12605	1116	39	1	109	1	PRKACG	9	71628059	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	72493	71628059	69585372	10037	18188											
FXN	2395	broad.mit.edu	37	chr9	71686199	71686199	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcactcatttttatctcCatactgggaacaggttcaag	8	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71686199	A	A	71686199	1	1	9	0	1	0	0	0	0	0	0	0	6174	609	21	2		2	FXN	9	71686199	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58140	71686199	69527232	10038	18189											
TJP2	9414	broad.mit.edu	37	chr9	71840267	71840267	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcgtaaaggaaatgaccCgaacgggtctggcaactaaa	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71840267	A	A	71840267	2	1	9	1	0	0	0	0	0	0	0	1	16053	644	23	1		1	TJP2	9	71840267	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	154068	71840267	69373164	10039	18190											
TJP2	9414	broad.mit.edu	37	chr9	71841059	71841059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaccctcatcaacatccCgtcattaaatgacagtgact	6	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71841059	A	A	71841059	3	1	9	1	0	0	0	0	1	0	0	0	16053	652	23	1	1361	1	TJP2	9	71841059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	792	71841059	69372372	10040	18191											
TJP2	9414	broad.mit.edu	37	chr9	71851981	71851981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaacctgaggaaaagtcGggaagacctcacagctgttg	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71851981	T	T	71851981	3	4	9	1	0	0	0	0	1	0	0	0	16053	1116	39	1	2319	1	TJP2	9	71851981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10922	71851981	69361450	10041	18192											
TJP2	9414	broad.mit.edu	37	chr9	71869216	71869216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccgaggaggaggagtacCgccagcagctgtcagaacac	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71869216	A	A	71869216	3	1	9	1	0	0	0	0	1	0	0	0	16053	652	23	1	3848	1	TJP2	9	71869216	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17235	71869216	69344215	10042	18193											
C9orf135	138255	broad.mit.edu	37	chr9	72459411	72459411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaactacatctcttaacGgactcctaattttttcttaa	2	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72459411	T	T	72459411	1	4	9	0	1	0	0	0	0	0	0	0	2484	1131	39	1		1	C9orf135	9	72459411	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	590195	72459411	68754020	10043	18194											
SMC5	23137	broad.mit.edu	37	chr9	72912933	72912933	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaatgaagagcttgacCgacagaggagaataggtaat	12	5	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72912933	A	A	72912933	2	1	9	1	0	0	0	0	0	0	0	1	14900	644	23	1		1	SMC5	9	72912933	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	453522	72912933	68300498	10044	18195											
SMC5	23137	broad.mit.edu	37	chr9	72967221	72967221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccaaaggcggcggcgcCgtattacattcactcaacct	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72967221	A	A	72967221	3	1	9	1	0	0	0	0	1	0	0	0	14900	652	23	1	3378	1	SMC5	9	72967221	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54288	72967221	68246210	10045	18196											
TRPM3	80036	broad.mit.edu	37	chr9	73151148	73151148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctctctgagttatcaccCtcctgggaggatattgcaat	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73151148	A	A	73151148	3	1	9	1	0	0	0	0	1	0	0	0	16712	680	24	2	282	2	TRPM3	9	73151148	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	183927	73151148	68062283	10046	18197											
TRPM3	80036	broad.mit.edu	37	chr9	73151236	73151236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgactcagttctgcttctCgctctggatggcagcaagtt	12	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73151236	A	A	73151236	3	1	9	1	0	0	0	0	1	0	0	0	16712	884	31	3	370	3	TRPM3	9	73151236	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	73151236	68062195	10047	18198											
TRPM3	80036	broad.mit.edu	37	chr9	73213400	73213400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgaagatgtctaggagacGgatataccagtaaatgatgt	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73213400	T	T	73213400	3	4	9	1	0	0	0	0	1	0	0	0	16712	1116	39	1	2200	1	TRPM3	9	73213400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62164	73213400	68000031	10048	18199											
TRPM3	80036	broad.mit.edu	37	chr9	73235270	73235270	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttcttcctcgcctcaaGggaatatcatcctgtaatta	6	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73235270	T	T	73235270	2	4	9	1	0	0	0	0	0	0	0	1	16712	987	35	2		2	TRPM3	9	73235270	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21870	73235270	67978161	10049	18200											
TRPM3	80036	broad.mit.edu	37	chr9	73296489	73296489	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgatcccatccgaaatacCgtaatctgcaatttgagaca	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73296489	A	A	73296489	2	1	9	1	0	0	0	0	0	0	0	1	16712	639	23	1		1	TRPM3	9	73296489	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	61219	73296489	67916942	10050	18201											
TRPM3	80036	broad.mit.edu	37	chr9	73442844	73442844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatattttccagtggtccCgttgtcagccagaatgaagt	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73442844	A	A	73442844	3	1	9	1	0	0	0	0	1	0	0	0	16712	652	23	1	4434	1	TRPM3	9	73442844	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146355	73442844	67770587	10051	18202											
TRPM3	80036	broad.mit.edu	37	chr9	73477868	73477868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttggaactcaatggtccCaaaagcatccgtagggctga	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73477868	A	A	73477868	3	1	9	1	0	0	0	0	1	0	0	0	16712	594	21	2	4920	2	TRPM3	9	73477868	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35024	73477868	67735563	10052	18203											
TMEM2	23670	broad.mit.edu	37	chr9	74300633	74300633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctggccctgtaagaaCttcatgaaataatacaaata	7	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74300633	A	A	74300633	1	1	9	0	1	0	0	0	0	0	0	0	16244	580	20	3		3	TMEM2	9	74300633	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	822765	74300633	66912798	10053	18204											
TMEM2	23670	broad.mit.edu	37	chr9	74304926	74304926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagagagtaaaaaatcGgacttgaccaggcattatca	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74304926	T	T	74304926	1	4	9	0	1	0	0	0	0	0	0	0	16244	1131	39	1		1	TMEM2	9	74304926	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4293	74304926	66908505	10054	18205											
TMEM2	23670	broad.mit.edu	37	chr9	74360286	74360286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgtaactccagtgtccCgccagcttccacaccaataa	5	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74360286	A	A	74360286	3	1	9	1	0	0	0	0	1	0	0	0	16244	652	23	1	3553	1	TMEM2	9	74360286	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55360	74360286	66853145	10055	18206											
FAM108B1	51104	broad.mit.edu	37	chr9	74485058	74485058	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggcaactcgcattccCgaagtcagaggagaatgaag	13	8	1	3	rs112750915	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74485058	A	A	74485058	2	1	9	1	0	0	0	0	0	0	0	1	5438	639	23	1		1	FAM108B1	9	74485058	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	124772	74485058	66728373	10056	18207											
GDA	9615	broad.mit.edu	37	chr9	74860134	74860134	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgccatcctgatcaacccCaaagcatccgactctcccat	5	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74860134	A	A	74860134	2	1	9	1	0	0	0	0	0	0	0	1	6369	581	21	2		2	GDA	9	74860134	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	375076	74860134	66353297	10057	18208											
GDA	9615	broad.mit.edu	37	chr9	74863239	74863239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcggaaagcaggtggttcCgttttccagctcagtgtaag	15	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74863239	A	A	74863239	3	1	9	1	0	0	0	0	1	0	0	0	6369	652	23	1	1400	1	GDA	9	74863239	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3105	74863239	66350192	10058	18209											
TMC1	117531	broad.mit.edu	37	chr9	75366819	75366819	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttgagatggatgtatGgagtcaatatggttctcttt	10	5	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75366819	T	T	75366819	4	4	9	1	0	0	0	0	0	1	0	0	16107	1349	47	2	615	2	TMC1	9	75366819	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	503580	75366819	65846612	10059	18210											
TMC1	117531	broad.mit.edu	37	chr9	75387346	75387346	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtttggcacaatattcCgttctcttttatggctatta	8	8	1	0	rs143200611	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75387346	A	A	75387346	2	1	9	1	0	0	0	0	0	0	0	1	16107	639	23	1		1	TMC1	9	75387346	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20527	75387346	65826085	10060	18211											
TMC1	117531	broad.mit.edu	37	chr9	75404038	75404038	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgttttcatggatacaGgaagctatcacagaagaaaa	9	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75404038	T	T	75404038	5	4	9	1	0	0	0	0	0	0	1	0	16107	1014	35	2	1071	2	TMC1	9	75404038	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	16692	75404038	65809393	10061	18212											
TMC1	117531	broad.mit.edu	37	chr9	75436040	75436040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggcatcgtgttctttcGggggtggaggtgggaatggt	18	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75436040	T	T	75436040	1	4	9	0	1	0	0	0	0	0	0	0	16107	1131	39	1		1	TMC1	9	75436040	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32002	75436040	65777391	10062	18213											
ALDH1A1	216	broad.mit.edu	37	chr9	75516228	75516228	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacatacccacaaacacCatttagcacagcagtataaa	3	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75516228	A	A	75516228	1	1	9	0	1	0	0	0	0	0	0	0	490	609	21	2		2	ALDH1A1	9	75516228	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80188	75516228	65697203	10063	18214											
ALDH1A1	216	broad.mit.edu	37	chr9	75533640	75533640	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtttctactcacagtcGgcatcagctaacacaatgca	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75533640	T	T	75533640	2	4	9	1	0	0	0	0	0	0	0	1	490	1103	39	1		1	ALDH1A1	9	75533640	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17412	75533640	65679791	10064	18215											
ANXA1	301	broad.mit.edu	37	chr9	75775833	75775833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgtaatgtccaacagtcCaaacgccttatttgaaaagg	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75775833	A	A	75775833	1	1	9	0	1	0	0	0	0	0	0	0	714	609	21	2		2	ANXA1	9	75775833	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	242193	75775833	65437598	10065	18216											
ANXA1	301	broad.mit.edu	37	chr9	75778413	75778413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccgatctgaggactttGgtgtgaatgaagacttggct	14	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75778413	T	T	75778413	3	4	9	1	0	0	0	0	1	0	0	0	714	1348	47	2	603	2	ANXA1	9	75778413	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2580	75778413	65435018	10066	18217											
ANXA1	301	broad.mit.edu	37	chr9	75783993	75783993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcaggattatggtttccCgttctgaaattgacatgaat	9	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75783993	A	A	75783993	3	1	9	1	0	0	0	0	1	0	0	0	714	652	23	1	949	1	ANXA1	9	75783993	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5580	75783993	65429438	10067	18218											
ANXA1	301	broad.mit.edu	37	chr9	75784099	75784099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattcctctaatgccatccCaacaaatgaaagttcttttt	4	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75784099	A	A	75784099	1	1	9	0	1	0	0	0	0	0	0	0	714	609	21	2		2	ANXA1	9	75784099	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	75784099	65429332	10068	18219											
RORB	6096	broad.mit.edu	37	chr9	77257341	77257341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacccagctgtgaagtttGggaggatgtccaagaagcaa	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77257341	T	T	77257341	3	4	9	1	0	0	0	0	1	0	0	0	13640	1348	47	2	261	2	RORB	9	77257341	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1473242	77257341	63956090	10069	18220											
RORB	6096	broad.mit.edu	37	chr9	77300485	77300485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaatacactgtttcctcCgttatacaaggagctcttta	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77300485	A	A	77300485	3	1	9	1	0	0	0	0	1	0	0	0	13640	652	23	1	1369	1	RORB	9	77300485	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43144	77300485	63912946	10070	18221											
TRPM6	140803	broad.mit.edu	37	chr9	77354609	77354609	+	Intron	SNP	G	T	T													tttctttgacttgtccctctGggctatgggtctctgagttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77354609	T	T	77354609	1	4	9	0	1	0	0	0	0	0	0	0	16715	1363	47	2		2	TRPM6	9	77354609	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	54124	77354609	63858822	10071	18222	120	2									
TRPM6	140803	broad.mit.edu	37	chr9	77354616	77354616	+	Intron	SNP	G	T	T													gacttgtccctctgggctatGggtctctgagtttcagactt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77354616	T	T	77354616	1	4	9	0	1	0	0	0	0	0	0	0	16715	1363	47	2		2	TRPM6	9	77354616	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	77354616	63858815	10072	18223	120	2									
TRPM6	140803	broad.mit.edu	37	chr9	77354640	77354640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagtttcagacttaccCtgaggcaaagatgaagcaca	9	10	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77354640	A	A	77354640	3	1	9	1	0	0	0	0	1	0	0	0	16715	695	24	2	606	2	TRPM6	9	77354640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	77354640	63858791	10073	18224											
TRPM6	140803	broad.mit.edu	37	chr9	77390815	77390815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttaatccaacgtcaccCtcttcttggtcgtgaggagc	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77390815	A	A	77390815	3	1	9	1	0	0	0	0	1	0	0	0	16715	680	24	2	2745	2	TRPM6	9	77390815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36175	77390815	63822616	10074	18225											
TRPM6	140803	broad.mit.edu	37	chr9	77397658	77397658	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctcaaatacaatatctcGagctagactccaagatggtg	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77397658	T	T	77397658	2	4	9	1	0	0	0	0	0	0	0	1	16715	1066	37	3		3	TRPM6	9	77397658	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6843	77397658	63815773	10075	18226											
TRPM6	140803	broad.mit.edu	37	chr9	77431826	77431826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccttcagcaaagctgttaGgattgctaagtccaggtctt	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77431826	T	T	77431826	3	4	9	1	0	0	0	0	1	0	0	0	16715	991	35	2	4999	2	TRPM6	9	77431826	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34168	77431826	63781605	10076	18227											
C9orf41	138199	broad.mit.edu	37	chr9	77611470	77611470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtagcaatacagtccCaggtatctaatgaagaaaaa	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77611470	A	A	77611470	3	1	9	1	0	0	0	0	1	0	0	0	2508	595	21	2	324	2	C9orf41	9	77611470	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	179644	77611470	63601961	10077	18228											
C9orf41	138199	broad.mit.edu	37	chr9	77632347	77632347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttctgttcggttcaccCgctcatgcatactggtgcta	9	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77632347	A	A	77632347	3	1	9	1	0	0	0	0	1	0	0	0	2508	652	23	1	1009	1	C9orf41	9	77632347	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20877	77632347	63581084	10078	18229											
C9orf95	54981	broad.mit.edu	37	chr9	77692145	77692145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaaataataaagtaccCatcaaaacagtgtgtaggaa	8	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77692145	A	A	77692145	1	1	9	0	1	0	0	0	0	0	0	0	2533	609	21	2		2	C9orf95	9	77692145	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	59798	77692145	63521286	10079	18230											
PCSK5	5125	broad.mit.edu	37	chr9	78506251	78506251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttcccggaggccaacCgtatcgccagcaagtacgga	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78506251	A	A	78506251	3	1	9	1	0	0	0	0	1	0	0	0	11697	652	23	1	156	1	PCSK5	9	78506251	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	814106	78506251	62707180	10080	18231											
PCSK5	5125	broad.mit.edu	37	chr9	78547359	78547359	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattaaaaggtcagttatctCgagcagagggacccacagtt	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78547359	A	A	78547359	4	1	9	1	0	0	0	0	0	1	0	0	11697	893	31	3	263	3	PCSK5	9	78547359	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41108	78547359	62666072	10081	18232											
PCSK5	5125	broad.mit.edu	37	chr9	78638725	78638725	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggaagagaggctacacGggaaagaacattgtggtcac	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78638725	T	T	78638725	2	4	9	1	0	0	0	0	0	0	0	1	11697	1103	39	1		1	PCSK5	9	78638725	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91366	78638725	62574706	10082	18233											
PCSK5	5125	broad.mit.edu	37	chr9	78686659	78686659	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagtgcgaatgctggacGgagatgtcacggacatggtt	16	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78686659	T	T	78686659	4	4	9	1	0	0	0	0	0	1	0	0	11697	1117	39	1	765	1	PCSK5	9	78686659	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47934	78686659	62526772	10083	18234											
PCSK5	5125	broad.mit.edu	37	chr9	78686742	78686742	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagcgccagctggggcccGgatgatgatggcaagactgt	15	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78686742	T	T	78686742	2	4	9	1	0	0	0	0	0	0	0	1	11697	1103	39	1		1	PCSK5	9	78686742	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	78686742	62526689	10084	18235											
PCSK5	5125	broad.mit.edu	37	chr9	78772038	78772038	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtggaccaccgttcccCggcagcacgtgtgtgtggag	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78772038	A	A	78772038	2	1	9	1	0	0	0	0	0	0	0	1	11697	643	23	1		1	PCSK5	9	78772038	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85296	78772038	62441393	10085	18236											
GCNT1	2650	broad.mit.edu	37	chr9	79118029	79118029	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaacaacctggaaacGgagaggatgccatcccataa	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79118029	T	T	79118029	2	4	9	1	0	0	0	0	0	0	0	1	6362	1103	39	1		1	GCNT1	9	79118029	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	345991	79118029	62095402	10086	18237											
PRUNE2	158471	broad.mit.edu	37	chr9	79318885	79318885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtttacaagtatgtaatcCatgtgtagtgcatgacgatc	10	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79318885	A	A	79318885	3	1	9	1	0	0	0	0	1	0	0	0	12747	594	21	2	1666	2	PRUNE2	9	79318885	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	200856	79318885	61894546	10087	18238											
PRUNE2	158471	broad.mit.edu	37	chr9	79320641	79320641	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaacctttatgagaggcGggctgagaggagccctttat	15	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79320641	T	T	79320641	2	4	9	1	0	0	0	0	0	0	0	1	12747	1103	39	1		1	PRUNE2	9	79320641	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1756	79320641	61892790	10088	18239											
PRUNE2	158471	broad.mit.edu	37	chr9	79323877	79323877	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcaggggccgtctgccGggagttggtgctgctgtgca	17	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79323877	T	T	79323877	2	4	9	1	0	0	0	0	0	0	0	1	12747	1115	39	1		1	PRUNE2	9	79323877	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3236	79323877	61889554	10089	18240											
PRUNE2	158471	broad.mit.edu	37	chr9	79465586	79465586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctggtggactgacctacCaagaaaaaagttgactgaat	9	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79465586	A	A	79465586	1	1	9	0	1	0	0	0	0	0	0	0	12747	609	21	2		2	PRUNE2	9	79465586	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	141709	79465586	61747845	10090	18241											
VPS13A	23230	broad.mit.edu	37	chr9	79890564	79890564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaataagatttgaagtacCaaaggtaggtactacggtaa	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79890564	A	A	79890564	3	1	9	1	0	0	0	0	1	0	0	0	17316	594	21	2	2761	2	VPS13A	9	79890564	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	424978	79890564	61322867	10091	18242											
VPS13A	23230	broad.mit.edu	37	chr9	79946948	79946948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatcatttttcagtccCactgtctgtttacgaagggg	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79946948	A	A	79946948	3	1	9	1	0	0	0	0	1	0	0	0	17316	594	21	2	6196	2	VPS13A	9	79946948	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56384	79946948	61266483	10092	18243											
VPS13A	23230	broad.mit.edu	37	chr9	79954788	79954788	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattataaaaagccagttctCttttcttttcagccaaatca	3	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79954788	A	A	79954788	2	1	9	1	0	0	0	0	0	0	0	1	17316	900	32	3		3	VPS13A	9	79954788	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7840	79954788	61258643	10093	18244											
VPS13A	23230	broad.mit.edu	37	chr9	79954854	79954854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtttattctgtttttccCttgtctttagctacttgtca	6	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79954854	A	A	79954854	1	1	9	0	1	0	0	0	0	0	0	0	17316	696	24	2		2	VPS13A	9	79954854	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	79954854	61258577	10094	18245											
GNA14	9630	broad.mit.edu	37	chr9	80144051	80144051	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcatggcttgcatggcGgtgaatatgttttggtaaac	12	6	1	2	rs146277431	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80144051	T	T	80144051	2	4	9	1	0	0	0	0	0	0	0	1	6566	1103	39	1		1	GNA14	9	80144051	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	189197	80144051	61069380	10095	18246											
PSAT1	29968	broad.mit.edu	37	chr9	80921263	80921263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcacctggaacctcaaccCagatgcctcctacgtgtatt	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80921263	A	A	80921263	3	1	9	1	0	0	0	0	1	0	0	0	12750	594	21	2	449	2	PSAT1	9	80921263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	777212	80921263	60292168	10096	18247											
PSAT1	29968	broad.mit.edu	37	chr9	80921330	80921330	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagtttgactttataccCgatgtcaagggagcagtact	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80921330	A	A	80921330	2	1	9	1	0	0	0	0	0	0	0	1	12750	639	23	1		1	PSAT1	9	80921330	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	67	80921330	60292101	10097	18248											
PSAT1	29968	broad.mit.edu	37	chr9	80943903	80943903	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtcattctaggtctgtGggaggcatccgggcctctct	13	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80943903	T	T	80943903	2	4	9	1	0	0	0	0	0	0	0	1	12750	1335	47	2		2	PSAT1	9	80943903	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22573	80943903	60269528	10098	18249											
TLE4	7091	broad.mit.edu	37	chr9	82322049	82322049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggatagaagagggatatGgggaaattgagtgaaacacg	15	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82322049	T	T	82322049	3	4	9	1	0	0	0	0	1	0	0	0	16064	1363	47	2		2	TLE4	9	82322049	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1378146	82322049	58891382	10099	18250											
TLE4	7091	broad.mit.edu	37	chr9	82323203	82323203	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttctatatttttatgctCgtttttaagaatttaaagca	4	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82323203	A	A	82323203	1	1	9	0	1	0	0	0	0	0	0	0	16064	899	31	3		3	TLE4	9	82323203	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1154	82323203	58890228	10100	18251											
TLE1	7088	broad.mit.edu	37	chr9	84231009	84231009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtcgattccattttccCggggcgagtgggcagggctt	14	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84231009	A	A	84231009	3	1	9	1	0	0	0	0	1	0	0	0	16061	652	23	1	1546	1	TLE1	9	84231009	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1907806	84231009	56982422	10101	18252											
TLE1	7088	broad.mit.edu	37	chr9	84267131	84267131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggtaggccacgtacccCgatgatggcattcaattctg	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84267131	A	A	84267131	3	1	9	1	0	0	0	0	1	0	0	0	16061	652	23	1	2002	1	TLE1	9	84267131	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36122	84267131	56946300	10102	18253											
FLJ46321	389763	broad.mit.edu	37	chr9	84606208	84606208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaccatcttttcatttGgctccaccctatgccaagat	5	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84606208	T	T	84606208	3	4	9	1	0	0	0	0	1	0	0	0	5990	1348	47	2	837	2	FLJ46321	9	84606208	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	339077	84606208	56607223	10103	18254											
FLJ46321	389763	broad.mit.edu	37	chr9	84608328	84608328	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacaacaagctcagtcccCatccttgatcgtcctcaccc	6	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84608328	A	A	84608328	2	1	9	1	0	0	0	0	0	0	0	1	5990	581	21	2		2	FLJ46321	9	84608328	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2120	84608328	56605103	10104	18255											
FLJ46321	389763	broad.mit.edu	37	chr9	84608467	84608467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccacatcccttagaagaGgtactacagattttcaaagc	6	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84608467	T	T	84608467	3	4	9	1	0	0	0	0	1	0	0	0	5990	1000	35	2	3096	2	FLJ46321	9	84608467	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139	84608467	56604964	10105	18256											
FLJ46321	389763	broad.mit.edu	37	chr9	84608623	84608623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcttacagaaagtgtcCggacaacagaggatggcaga	12	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84608623	A	A	84608623	2	1	9	1	0	0	0	0	0	0	0	1	5990	643	23	1		1	FLJ46321	9	84608623	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	156	84608623	56604808	10106	18257											
FLJ46321	389763	broad.mit.edu	37	chr9	84609178	84609178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggaggacagcggaatcCgtgtggcacagaagcaggag	16	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84609178	A	A	84609178	3	1	9	1	0	0	0	0	1	0	0	0	5990	652	23	1	3807	1	FLJ46321	9	84609178	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	555	84609178	56604253	10107	18258											
RASEF	158158	broad.mit.edu	37	chr9	85597587	85597587	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacaggccaaggatgtttGggatttagccattgcaacaa	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85597587	T	T	85597587	1	4	9	0	1	0	0	0	0	0	0	0	13176	1363	47	2		2	RASEF	9	85597587	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	988409	85597587	55615844	10108	18259											
RASEF	158158	broad.mit.edu	37	chr9	85597642	85597642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactttttggaattggtccCggttagattggtaatggatc	12	5	0	2	rs151062160	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85597642	A	A	85597642	3	1	9	1	0	0	0	0	1	0	0	0	13176	652	23	1	53	1	RASEF	9	85597642	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	85597642	55615789	10109	18260											
FRMD3	257019	broad.mit.edu	37	chr9	85925435	85925435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacataaaatgtcttccCttcaaacttcaatttgcaga	3	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85925435	A	A	85925435	3	1	9	1	0	0	0	0	1	0	0	0	6110	681	24	2	1015	2	FRMD3	9	85925435	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	327793	85925435	55287996	10110	18261											
FRMD3	257019	broad.mit.edu	37	chr9	85928598	85928598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggtgaggatccacccCgtaggtttccaaagtgtgag	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85928598	A	A	85928598	3	1	9	1	0	0	0	0	1	0	0	0	6110	652	23	1	1164	1	FRMD3	9	85928598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3163	85928598	55284833	10111	18262											
UBQLN1	29979	broad.mit.edu	37	chr9	86292810	86292810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatctctattttctgtacGggaaggttgactaccttcac	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86292810	T	T	86292810	3	4	9	1	0	0	0	0	1	0	0	0	17022	1116	39	1	856	1	UBQLN1	9	86292810	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	364212	86292810	54920621	10112	18263											
UBQLN1	29979	broad.mit.edu	37	chr9	86293457	86293457	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaggttgctcaaagctcGgtcctggttcctcatcatct	8	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86293457	T	T	86293457	2	4	9	1	0	0	0	0	0	0	0	1	17022	1124	39	1		1	UBQLN1	9	86293457	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	647	86293457	54919974	10113	18264											
GKAP1	80318	broad.mit.edu	37	chr9	86368163	86368163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttaacaacagtaaatGgacacaaacctcccattgag	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86368163	T	T	86368163	1	4	9	0	1	0	0	0	0	0	0	0	6487	1363	47	2		2	GKAP1	9	86368163	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	74706	86368163	54845268	10114	18265											
GKAP1	80318	broad.mit.edu	37	chr9	86414140	86414140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcttgccaattttcttctCgtgaatccttctgtactggg	7	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86414140	A	A	86414140	3	1	9	1	0	0	0	0	1	0	0	0	6487	884	31	3	820	3	GKAP1	9	86414140	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45977	86414140	54799291	10115	18266											
KIF27	55582	broad.mit.edu	37	chr9	86518671	86518671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgttcaccagtattcccCgttttggttactctttctga	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86518671	A	A	86518671	2	1	9	1	0	0	0	0	0	0	0	1	8366	639	23	1		1	KIF27	9	86518671	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	104531	86518671	54694760	10116	18267											
KIF27	55582	broad.mit.edu	37	chr9	86523531	86523531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaatatttcttgaatagctCgaggaatgatacccttttgg	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86523531	A	A	86523531	3	1	9	1	0	0	0	0	1	0	0	0	8366	884	31	3	3934	3	KIF27	9	86523531	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4860	86523531	54689900	10117	18268											
HNRNPK	3190	broad.mit.edu	37	chr9	86586565	86586565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacatacccaacacactGgtaataaaccaaagttctta	3	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86586565	T	T	86586565	1	4	9	0	1	0	0	0	0	0	0	0	7336	1363	47	2		2	HNRNPK	9	86586565	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	63034	86586565	54626866	10118	18269											
HNRNPK	3190	broad.mit.edu	37	chr9	86591918	86591918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaatacttacgtctgtacGgagagccttaatattcttgc	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86591918	T	T	86591918	3	4	9	1	0	0	0	0	1	0	0	0	7336	1116	39	1	1276	1	HNRNPK	9	86591918	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5353	86591918	54621513	10119	18270											
RMI1	80010	broad.mit.edu	37	chr9	86615972	86615972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcatgttaaagtacctcCgatgtggctggaagcttgta	12	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86615972	A	A	86615972	3	1	9	1	0	0	0	0	1	0	0	0	13506	652	23	1	73	1	RMI1	9	86615972	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24054	86615972	54597459	10120	18271											
RMI1	80010	broad.mit.edu	37	chr9	86616040	86616040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttaacttgagtcaggccCaaatgaataaacaagtgttt	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86616040	A	A	86616040	3	1	9	1	0	0	0	0	1	0	0	0	13506	595	21	2	141	2	RMI1	9	86616040	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	86616040	54597391	10121	18272											
SLC28A3	64078	broad.mit.edu	37	chr9	86912904	86912904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaagaagaaactgtagccCgattccccataagacaggtc	8	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86912904	A	A	86912904	3	1	9	1	0	0	0	0	1	0	0	0	14647	652	23	1	1423	1	SLC28A3	9	86912904	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	296864	86912904	54300527	10122	18273											
NTRK2	4915	broad.mit.edu	37	chr9	87285642	87285642	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcggggacaggcactcGggctggcactggctgctagg	18	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87285642	T	T	87285642	1	4	9	0	1	0	0	0	0	0	0	0	10802	1131	39	1		1	NTRK2	9	87285642	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	372738	87285642	53927789	10123	18274											
NTRK2	4915	broad.mit.edu	37	chr9	87322805	87322805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtctaggaaacatttcCgtcaccttgacttgtctgaa	8	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87322805	A	A	87322805	3	1	9	1	0	0	0	0	1	0	0	0	10802	652	23	1	420	1	NTRK2	9	87322805	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37163	87322805	53890626	10124	18275											
NTRK2	4915	broad.mit.edu	37	chr9	87486726	87486726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaggttcccccaagacCgcctgataataatttggtat	8	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87486726	A	A	87486726	1	1	9	0	1	0	0	0	0	0	0	0	10802	639	23	1		1	NTRK2	9	87486726	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	163921	87486726	53726705	10125	18276											
AGTPBP1	23287	broad.mit.edu	37	chr9	88207720	88207720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggaaaaaagaaaaaccCgagtctgtaaaaagtgtaac	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88207720	A	A	88207720	1	1	9	0	1	0	0	0	0	0	0	0	400	667	23	1		1	AGTPBP1	9	88207720	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	720994	88207720	53005711	10126	18277											
AGTPBP1	23287	broad.mit.edu	37	chr9	88257808	88257808	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcttctattgttcgtccCggttcttgctggggttttag	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88257808	A	A	88257808	2	1	9	1	0	0	0	0	0	0	0	1	400	639	23	1		1	AGTPBP1	9	88257808	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50088	88257808	52955623	10127	18278											
AGTPBP1	23287	broad.mit.edu	37	chr9	88292391	88292391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatagaatgaatctgtacCattaagtcctcatgtggggg	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88292391	A	A	88292391	3	1	9	1	0	0	0	0	1	0	0	0	400	594	21	2	3248	2	AGTPBP1	9	88292391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34583	88292391	52921040	10128	18279											
NAA35	60560	broad.mit.edu	37	chr9	88574707	88574707	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattcttcctcctttttaGgatggcactattaaaattaa	4	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88574707	T	T	88574707	5	4	9	1	0	0	0	0	0	0	1	0	10217	1014	35	2	287	2	NAA35	9	88574707	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	282316	88574707	52638724	10129	18280											
NAA35	60560	broad.mit.edu	37	chr9	88592320	88592320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagcagagtgaaatttactCgtgtgttactgacagtgctt	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88592320	A	A	88592320	3	1	9	1	0	0	0	0	1	0	0	0	10217	884	31	3	755	3	NAA35	9	88592320	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17613	88592320	52621111	10130	18281											
NAA35	60560	broad.mit.edu	37	chr9	88624845	88624845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgttactcactgtgttcGggtaagagctacaatttgga	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88624845	T	T	88624845	3	4	9	1	0	0	0	0	1	0	0	0	10217	1130	39	1	1343	1	NAA35	9	88624845	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32525	88624845	52588586	10131	18282											
NAA35	60560	broad.mit.edu	37	chr9	88633726	88633726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggaaaatattcctaaccCggaccatgaggtgagactgg	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88633726	A	A	88633726	3	1	9	1	0	0	0	0	1	0	0	0	10217	652	23	1	2105	1	NAA35	9	88633726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8881	88633726	52579705	10132	18283											
ISCA1	81689	broad.mit.edu	37	chr9	88881004	88881004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagtccctttgatgtttGggttattgaacacaaactca	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88881004	T	T	88881004	3	4	9	1	0	0	0	0	1	0	0	0	7919	1348	47	2	49	2	ISCA1	9	88881004	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	247278	88881004	52332427	10133	18284											
ZCCHC6	79670	broad.mit.edu	37	chr9	88917950	88917950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtacctcatttaaaaattGggacattaagaaaataaaaa	5	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88917950	T	T	88917950	1	4	9	0	1	0	0	0	0	0	0	0	17718	1363	47	2		2	ZCCHC6	9	88917950	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36946	88917950	52295481	10134	18285											
ZCCHC6	79670	broad.mit.edu	37	chr9	88967736	88967736	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagtcttttctttgtcGgtttataacaggaattctag	9	5	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88967736	T	T	88967736	2	4	9	1	0	0	0	0	0	0	0	1	17718	1124	39	1		1	ZCCHC6	9	88967736	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	49786	88967736	52245695	10135	18286											
DAPK1	1612	broad.mit.edu	37	chr9	90254517	90254517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcatgaagatagaatcGgttagtttgcttcctcccaa	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90254517	T	T	90254517	1	4	9	0	1	0	0	0	0	0	0	0	4268	1131	39	1		1	DAPK1	9	90254517	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1286781	90254517	50958914	10136	18287											
DAPK1	1612	broad.mit.edu	37	chr9	90255752	90255752	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaagatagtttgcagcatcCctggatcaaggtgagttgca	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90255752	G	G	90255752	3	3	9	1	0	0	0	0	1	0	0	0	4268	623	22	4	848	4	DAPK1	9	90255752	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1235	90255752	50957679	10137	18288											
DAPK1	1612	broad.mit.edu	37	chr9	90266476	90266476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatctggctgtaagacGgtgtcagatggaggtaatca	12	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90266476	T	T	90266476	3	4	9	1	0	0	0	0	1	0	0	0	4268	1116	39	1	1723	1	DAPK1	9	90266476	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10724	90266476	50946955	10138	18289											
DAPK1	1612	broad.mit.edu	37	chr9	90283441	90283441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttctgcctcagacccacGgaattggcgtatggaacaca	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90283441	T	T	90283441	1	4	9	0	1	0	0	0	0	0	0	0	4268	1131	39	1		1	DAPK1	9	90283441	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16965	90283441	50929990	10139	18290											
DAPK1	1612	broad.mit.edu	37	chr9	90321842	90321842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcagcatcatgtgcttcGggtgtcacgacgtctactca	10	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90321842	T	T	90321842	3	4	9	1	0	0	0	0	1	0	0	0	4268	1116	39	1	3954	1	DAPK1	9	90321842	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38401	90321842	50891589	10140	18291											
C9orf79	286234	broad.mit.edu	37	chr9	90500069	90500069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaaccctgagtgcctccGggccaccagagcccttgctt	9	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90500069	T	T	90500069	3	4	9	1	0	0	0	0	1	0	0	0	2523	1116	39	1	681	1	C9orf79	9	90500069	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178227	90500069	50713362	10141	18292											
C9orf79	286234	broad.mit.edu	37	chr9	90502053	90502053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcctcctgggtatctcGggttgaatctgtacccaagg	13	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90502053	T	T	90502053	3	4	9	1	0	0	0	0	1	0	0	0	2523	1116	39	1	2665	1	C9orf79	9	90502053	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1984	90502053	50711378	10142	18293											
FAM75C1	441452	broad.mit.edu	37	chr9	90535547	90535547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcactcctcctcccctgcGggactccactctgttaacac	5	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90535547	T	T	90535547	3	4	9	1	0	0	0	0	1	0	0	0	5676	1116	39	1	739	1	FAM75C1	9	90535547	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33494	90535547	50677884	10143	18294											
FAM75C1	441452	broad.mit.edu	37	chr9	90536065	90536065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaacaactagaaggtGggttggctttaccctctagg	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90536065	T	T	90536065	3	4	9	1	0	0	0	0	1	0	0	0	5676	1348	47	2	1257	2	FAM75C1	9	90536065	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	518	90536065	50677366	10144	18295											
FAM75C1	441452	broad.mit.edu	37	chr9	90536664	90536664	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcaaccaggcttttccCgtatccaacacccacgtgaa	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90536664	A	A	90536664	2	1	9	1	0	0	0	0	0	0	0	1	5676	639	23	1		1	FAM75C1	9	90536664	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	599	90536664	50676767	10145	18296											
FAM75C1	441452	broad.mit.edu	37	chr9	90536816	90536816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgggccaaacacaggtGgggtctacccctcagggtcc	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90536816	T	T	90536816	3	4	9	1	0	0	0	0	1	0	0	0	5676	1357	47	2	2008	2	FAM75C1	9	90536816	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	152	90536816	50676615	10146	18297											
FAM75C1	441452	broad.mit.edu	37	chr9	90537805	90537805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaaaacagaagacaccCgtcagaatgaaggcgtccag	11	10	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90537805	A	A	90537805	3	1	9	1	0	0	0	0	1	0	0	0	5676	652	23	1	2997	1	FAM75C1	9	90537805	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	989	90537805	50675626	10147	18298											
FAM75C1	441452	broad.mit.edu	37	chr9	90538136	90538136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgcaaccacagacaccCgttctactcagaccacagca	5	18	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90538136	A	A	90538136	3	1	9	1	0	0	0	0	1	0	0	0	5676	652	23	1	3328	1	FAM75C1	9	90538136	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	331	90538136	50675295	10148	18299											
S1PR3	1903	broad.mit.edu	37	chr9	91616730	91616730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcatcagcatcttcacGgccatcctggtgaccatcgt	8	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91616730	T	T	91616730	2	4	9	1	0	0	0	0	0	0	0	1	13906	1103	39	1		1	S1PR3	9	91616730	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1078594	91616730	49596701	10149	18300											
SHC3	53358	broad.mit.edu	37	chr9	91652962	91652962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggccattgtgcatgccCgtgaggacaaaggagcccgg	15	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91652962	A	A	91652962	2	1	9	1	0	0	0	0	0	0	0	1	14385	639	23	1		1	SHC3	9	91652962	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36232	91652962	49560469	10150	18301											
SHC3	53358	broad.mit.edu	37	chr9	91652981	91652981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgaggacaaaggagcccGggttggtggtgctcttcctg	16	10	1	1	rs144984717		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91652981	T	T	91652981	3	4	9	1	0	0	0	0	1	0	0	0	14385	1116	39	1	209	1	SHC3	9	91652981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	91652981	49560450	10151	18302											
SHC3	53358	broad.mit.edu	37	chr9	91661882	91661882	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccatctccctcctcttcCgtccatggctcatccagact	6	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91661882	A	A	91661882	2	1	9	1	0	0	0	0	0	0	0	1	14385	639	23	1		1	SHC3	9	91661882	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8901	91661882	49551549	10152	18303											
SHC3	53358	broad.mit.edu	37	chr9	91666879	91666879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtccagaacacagctcaGggatgtggttttaagaggaa	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91666879	T	T	91666879	1	4	9	0	1	0	0	0	0	0	0	0	14385	1015	35	2		2	SHC3	9	91666879	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4997	91666879	49546552	10153	18304											
SECISBP2	79048	broad.mit.edu	37	chr9	91972328	91972328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgtcctttgaccaggtGggctggatgacactttgcac	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91972328	T	T	91972328	3	4	9	1	0	0	0	0	1	0	0	0	14119	1348	47	2	2174	2	SECISBP2	9	91972328	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	305449	91972328	49241103	10154	18305											
SECISBP2	79048	broad.mit.edu	37	chr9	91972403	91972403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgtgtttgctctcaacCgcaaagctctggggcgcagt	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91972403	A	A	91972403	3	1	9	1	0	0	0	0	1	0	0	0	14119	652	23	1	2249	1	SECISBP2	9	91972403	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	91972403	49241028	10155	18306											
SEMA4D	10507	broad.mit.edu	37	chr9	91994252	91994252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaggtgggggccactacGggctttggaaccaccttcac	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91994252	T	T	91994252	2	4	9	1	0	0	0	0	0	0	0	1	14147	1103	39	1		1	SEMA4D	9	91994252	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21849	91994252	49219179	10156	18307											
SEMA4D	10507	broad.mit.edu	37	chr9	92008448	92008448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgccactgtaatcttcacGgtgaaggaactggaggggca	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92008448	T	T	92008448	1	4	9	0	1	0	0	0	0	0	0	0	14147	1131	39	1		1	SEMA4D	9	92008448	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14196	92008448	49204983	10157	18308											
SEMA4D	10507	broad.mit.edu	37	chr9	92008487	92008487	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggactcaccaaccatgacGgatgtgtagctgtgtgctgg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92008487	T	T	92008487	2	4	9	1	0	0	0	0	0	0	0	1	14147	1103	39	1		1	SEMA4D	9	92008487	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	92008487	49204944	10158	18309											
SEMA4D	10507	broad.mit.edu	37	chr9	92065661	92065661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattagaagaaaatgaagctGgggaccaaggtgggtcccat	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92065661	T	T	92065661	1	4	9	0	1	0	0	0	0	0	0	0	14147	1363	47	2		2	SEMA4D	9	92065661	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57174	92065661	49147770	10159	18310											
DIRAS2	54769	broad.mit.edu	37	chr9	93375997	93375997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggtgtcttccaccgtcGggatgtagctctcccggaat	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93375997	T	T	93375997	3	4	9	1	0	0	0	0	1	0	0	0	4571	1116	39	1	490	1	DIRAS2	9	93375997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1310336	93375997	47837434	10160	18311											
DIRAS2	54769	broad.mit.edu	37	chr9	93376012	93376012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcgggatgtagctctccCggaatgtgcctttcacaaac	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93376012	A	A	93376012	3	1	9	1	0	0	0	0	1	0	0	0	4571	652	23	1	505	1	DIRAS2	9	93376012	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	93376012	47837419	10161	18312											
SYK	6850	broad.mit.edu	37	chr9	93629424	93629424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttctagacttggtcagcGggtggaataatctcaagaat	12	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93629424	T	T	93629424	2	4	9	1	0	0	0	0	0	0	0	1	15557	1103	39	1		1	SYK	9	93629424	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	253412	93629424	47584007	10162	18313											
SYK	6850	broad.mit.edu	37	chr9	93639904	93639904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacgaggccaatgacccCgctcttaaagatgagttatt	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93639904	A	A	93639904	2	1	9	1	0	0	0	0	0	0	0	1	15557	639	23	1		1	SYK	9	93639904	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10480	93639904	47573527	10163	18314											
NFIL3	4783	broad.mit.edu	37	chr9	94172693	94172693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtggcgttttcttctccCagtgcaattagtttgttctc	8	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94172693	A	A	94172693	2	1	9	1	0	0	0	0	0	0	0	1	10468	581	21	2		2	NFIL3	9	94172693	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	532789	94172693	47040738	10164	18315											
ROR2	4920	broad.mit.edu	37	chr9	94486316	94486316	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accggctggtagccgttgacGgggacgtagagctgcggcgg	19	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94486316	T	T	94486316	2	4	9	1	0	0	0	0	0	0	0	1	13638	1103	39	1		1	ROR2	9	94486316	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	313623	94486316	46727115	10165	18316											
ROR2	4920	broad.mit.edu	37	chr9	94519683	94519683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccatattctgtcttccGgatgatgatccgccgcggct	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94519683	T	T	94519683	2	4	9	1	0	0	0	0	0	0	0	1	13638	1115	39	1		1	ROR2	9	94519683	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33367	94519683	46693748	10166	18317											
IARS	3376	broad.mit.edu	37	chr9	94984784	94984784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaaataaaaaacttacGgtccacaatctccttaccct	2	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94984784	T	T	94984784	1	4	9	0	1	0	0	0	0	0	0	0	7543	1131	39	1		1	IARS	9	94984784	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	465101	94984784	46228647	10167	18318											
IARS	3376	broad.mit.edu	37	chr9	94984987	94984987	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaacaaactggattaaatctCgagagttcaccctctagctc	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94984987	A	A	94984987	1	1	9	0	1	0	0	0	0	0	0	0	7543	899	31	3		3	IARS	9	94984987	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	203	94984987	46228444	10168	18319											
IARS	3376	broad.mit.edu	37	chr9	95027374	95027374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtgcaaggatcccttccCacagcgtgaaggaatggtca	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95027374	A	A	95027374	3	1	9	1	0	0	0	0	1	0	0	0	7543	594	21	2	2327	2	IARS	9	95027374	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42387	95027374	46186057	10169	18320											
IARS	3376	broad.mit.edu	37	chr9	95033876	95033876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcctgaagcatccacaGggcaaacagggagtgagtct	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95033876	T	T	95033876	3	4	9	1	0	0	0	0	1	0	0	0	7543	1000	35	2	2832	2	IARS	9	95033876	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6502	95033876	46179555	10170	18321											
IARS	3376	broad.mit.edu	37	chr9	95049998	95049998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaataaaaaaagcacaaGggaccataaaccatttcaat	4	7	1	0	rs140044507	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95049998	T	T	95049998	1	4	9	0	1	0	0	0	0	0	0	0	7543	1015	35	2		2	IARS	9	95049998	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16122	95049998	46163433	10171	18322											
NOL8	55035	broad.mit.edu	37	chr9	95086517	95086517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagagaagagttctttccCttagttcttctaaaatctaa	5	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95086517	A	A	95086517	1	1	9	0	1	0	0	0	0	0	0	0	10622	696	24	2		2	NOL8	9	95086517	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36519	95086517	46126914	10172	18323											
OMD	4958	broad.mit.edu	37	chr9	95179687	95179687	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactgatgaaaaggaactcCgtagtctacattttgacgaa	8	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95179687	A	A	95179687	4	1	9	1	0	0	0	0	0	1	0	0	10959	661	23	1	1119	1	OMD	9	95179687	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93170	95179687	46033744	10173	18324											
ECM2	1842	broad.mit.edu	37	chr9	95267944	95267944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgagattgtttccttcCaattctaaggtgaccaactg	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95267944	A	A	95267944	3	1	9	1	0	0	0	0	1	0	0	0	4938	593	21	2	780	2	ECM2	9	95267944	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88257	95267944	45945487	10174	18325											
ECM2	1842	broad.mit.edu	37	chr9	95279976	95279976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatctctgtaccagtagcGgagcagaccgggcagcattc	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95279976	T	T	95279976	2	4	9	1	0	0	0	0	0	0	0	1	4938	1103	39	1		1	ECM2	9	95279976	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12032	95279976	45933455	10175	18326											
CENPP	401541	broad.mit.edu	37	chr9	95375351	95375351	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgctcctctcagcttcCgaaccctggtaggactgctt	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95375351	A	A	95375351	2	1	9	1	0	0	0	0	0	0	0	1	3270	644	23	1		1	CENPP	9	95375351	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95375	95375351	45838080	10176	18327											
BICD2	23299	broad.mit.edu	37	chr9	95481376	95481376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccacactcaggctgccCtgtgtctcgccggcgacgtc	13	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95481376	A	A	95481376	3	1	9	1	0	0	0	0	1	0	0	0	1435	680	24	2	1038	2	BICD2	9	95481376	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106025	95481376	45732055	10177	18328											
FGD3	89846	broad.mit.edu	37	chr9	95773521	95773521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggagctcatctccacagcCgccaaccactccaatgctgc	7	17	2	0	rs140324424	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95773521	A	A	95773521	2	1	9	1	0	0	0	0	0	0	0	1	5891	639	23	1		1	FGD3	9	95773521	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	292145	95773521	45439910	10178	18329											
SUSD3	203328	broad.mit.edu	37	chr9	95840307	95840307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgatctcagggtcctccCgggaggcgcctcttggcacc	12	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95840307	A	A	95840307	1	1	9	0	1	0	0	0	0	0	0	0	15527	667	23	1		1	SUSD3	9	95840307	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66786	95840307	45373124	10179	18330											
WNK2	65268	broad.mit.edu	37	chr9	96062340	96062340	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcatttgcaggctggacGgtttaccacccaacgtctga	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96062340	T	T	96062340	2	4	9	1	0	0	0	0	0	0	0	1	17505	1103	39	1		1	WNK2	9	96062340	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	222033	96062340	45151091	10180	18331											
WNK2	65268	broad.mit.edu	37	chr9	96062415	96062415	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgattcctcagtggaccCgtatctgtgtccatctgtct	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96062415	A	A	96062415	2	1	9	1	0	0	0	0	0	0	0	1	17505	639	23	1		1	WNK2	9	96062415	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	96062415	45151016	10181	18332											
WNK2	65268	broad.mit.edu	37	chr9	96069067	96069067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccttgcagggtctgccCtgaagcgtctctgcctaggc	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96069067	A	A	96069067	3	1	9	1	0	0	0	0	1	0	0	0	17505	680	24	2	6325	2	WNK2	9	96069067	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6652	96069067	45144364	10182	18333											
FAM120AOS	158293	broad.mit.edu	37	chr9	96212838	96212838	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctgggcagcagctgtcCggccacagcctgtcggttgc	15	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96212838	A	A	96212838	4	1	9	1	0	0	0	0	0	1	0	0	5462	661	23	1	171	1	FAM120AOS	9	96212838	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143771	96212838	45000593	10183	18334											
FAM120A	23196	broad.mit.edu	37	chr9	96294436	96294436	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctttcttccatgcaaaGggtgaaatcaaaattgctgt	8	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96294436	T	T	96294436	5	4	9	1	0	0	0	0	0	0	1	0	5461	1014	35	2	1772	2	FAM120A	9	96294436	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	81598	96294436	44918995	10184	18335											
FAM120A	23196	broad.mit.edu	37	chr9	96305561	96305561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaagtctcctcaaacccCggaactggttgaagctcttg	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96305561	A	A	96305561	3	1	9	1	0	0	0	0	1	0	0	0	5461	652	23	1	2009	1	FAM120A	9	96305561	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11125	96305561	44907870	10185	18336											
FAM120A	23196	broad.mit.edu	37	chr9	96318682	96318682	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattgagaacctagatcccCgaggaattcagctatcagct	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96318682	A	A	96318682	2	1	9	1	0	0	0	0	0	0	0	1	5461	644	23	1		1	FAM120A	9	96318682	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13121	96318682	44894749	10186	18337											
PHF2	5253	broad.mit.edu	37	chr9	96418891	96418891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaaggtactggtcactcCggggtgggcgtccaagcctg	14	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96418891	A	A	96418891	1	1	9	0	1	0	0	0	0	0	0	0	11925	667	23	1		1	PHF2	9	96418891	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	100209	96418891	44794540	10187	18338											
PHF2	5253	broad.mit.edu	37	chr9	96437215	96437215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctccctctagtttaccCctcactggagtcagatgaag	8	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96437215	A	A	96437215	3	1	9	1	0	0	0	0	1	0	0	0	11925	623	22	2	2707	2	PHF2	9	96437215	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18324	96437215	44776216	10188	18339											
PHF2	5253	broad.mit.edu	37	chr9	96439858	96439858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttttgtgtcccctcccCgactcccctaggaaaacgta	6	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96439858	A	A	96439858	1	1	9	0	1	0	0	0	0	0	0	0	11925	667	23	1		1	PHF2	9	96439858	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2643	96439858	44773573	10189	18340											
PHF2	5253	broad.mit.edu	37	chr9	96439898	96439898	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaaaaagggcatggcgacCgccaagcagaggcttgggaa	15	9	0	1	rs140577032		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96439898	A	A	96439898	2	1	9	1	0	0	0	0	0	0	0	1	11925	639	23	1		1	PHF2	9	96439898	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	96439898	44773533	10190	18341											
PTPDC1	138639	broad.mit.edu	37	chr9	96859672	96859672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcaattatatttgtgcGggcaaagcgacccaattcca	8	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96859672	T	T	96859672	3	4	9	1	0	0	0	0	1	0	0	0	12879	1116	39	1	926	1	PTPDC1	9	96859672	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	419774	96859672	44353759	10191	18342											
HIATL1	84641	broad.mit.edu	37	chr9	97221462	97221462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagctgtcatcccaggccCgccgtttttatttggggcat	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97221462	A	A	97221462	3	1	9	1	0	0	0	0	1	0	0	0	7165	652	23	1	1335	1	HIATL1	9	97221462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	361790	97221462	43991969	10192	18343											
FBP2	8789	broad.mit.edu	37	chr9	97349721	97349721	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttcttcacctcatctccCgtcacgttaacgcttcctgc	5	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97349721	A	A	97349721	2	1	9	1	0	0	0	0	0	0	0	1	5763	639	23	1		1	FBP2	9	97349721	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	128259	97349721	43863710	10193	18344											
C9orf3	84909	broad.mit.edu	37	chr9	97535509	97535509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgtggacccaggaaccCaataaacagtatttttctaa	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97535509	A	A	97535509	1	1	9	0	1	0	0	0	0	0	0	0	2503	609	21	2		2	C9orf3	9	97535509	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	185788	97535509	43677922	10194	18345											
C9orf3	84909	broad.mit.edu	37	chr9	97555111	97555111	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccttcacaattgcagtGggatgctggacagaaatgaa	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97555111	T	T	97555111	2	4	9	1	0	0	0	0	0	0	0	1	2503	1335	47	2		2	C9orf3	9	97555111	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19602	97555111	43658320	10195	18346											
C9orf3	84909	broad.mit.edu	37	chr9	97718295	97718295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacagctgattctttccCaggtaacttatgggtcctca	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97718295	A	A	97718295	3	1	9	1	0	0	0	0	1	0	0	0	2503	595	21	2	1595	2	C9orf3	9	97718295	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	163184	97718295	43495136	10196	18347											
PTCH1	5727	broad.mit.edu	37	chr9	98248147	98248147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatttaattcacgacttactCgtcctccaactgacaaatat	3	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98248147	A	A	98248147	3	1	9	1	0	0	0	0	1	0	0	0	12836	884	31	3	4023	3	PTCH1	9	98248147	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	529852	98248147	42965284	10197	18348											
HSD17B3	3293	broad.mit.edu	37	chr9	99060629	99060629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattcaaaaatctagtgttGgggtggatgtctcaggactg	12	5	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99060629	T	T	99060629	1	4	9	0	1	0	0	0	0	0	0	0	7452	1363	47	2		2	HSD17B3	9	99060629	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	812482	99060629	42152802	10198	18349											
HSD17B3	3293	broad.mit.edu	37	chr9	99060666	99060666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgattgttcaatacaaGggaggagaaagtccccagga	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99060666	T	T	99060666	1	4	9	0	1	0	0	0	0	0	0	0	7452	1015	35	2		2	HSD17B3	9	99060666	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	99060666	42152765	10199	18350											
SLC35D2	11046	broad.mit.edu	37	chr9	99084341	99084341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccaccgattaatatccCaatgtaggcaacggatacat	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99084341	A	A	99084341	3	1	9	1	0	0	0	0	1	0	0	0	14696	594	21	2	168	2	SLC35D2	9	99084341	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23675	99084341	42129090	10200	18351											
ZNF367	195828	broad.mit.edu	37	chr9	99160539	99160539	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctggatgaatgctctcCttcatttattaaatcgcgga	8	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99160539	A	A	99160539	4	1	9	1	0	0	0	0	0	1	0	0	17997	690	24	2	590	2	ZNF367	9	99160539	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76198	99160539	42052892	10201	18352											
CDC14B	8555	broad.mit.edu	37	chr9	99285466	99285466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttattattttacctacGgttttctccataccctgaca	4	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99285466	T	T	99285466	1	4	9	0	1	0	0	0	0	0	0	0	3087	1131	39	1		1	CDC14B	9	99285466	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	124927	99285466	41927965	10202	18353											
CDC14B	8555	broad.mit.edu	37	chr9	99285532	99285532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaacatcgcaacagaaacGgcttgattaccggttcgggt	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99285532	T	T	99285532	1	4	9	0	1	0	0	0	0	0	0	0	3087	1131	39	1		1	CDC14B	9	99285532	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	66	99285532	41927899	10203	18354											
ZNF510	22869	broad.mit.edu	37	chr9	99521945	99521945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcggcgaactctgtgaacCgacgtctggtaggatttctt	11	10	3	1	rs150372270		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99521945	A	A	99521945	2	1	9	1	0	0	0	0	0	0	0	1	18081	639	23	1		1	ZNF510	9	99521945	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	236413	99521945	41691486	10204	18355											
ZNF510	22869	broad.mit.edu	37	chr9	99525402	99525402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgctcagtaactcacttGggtgactctggtttgagaat	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99525402	T	T	99525402	3	4	9	1	0	0	0	0	1	0	0	0	18081	1348	47	2	1709	2	ZNF510	9	99525402	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3457	99525402	41688029	10205	18356											
ZNF782	158431	broad.mit.edu	37	chr9	99580717	99580717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttgtagggcttctcccCtgtgtgtgttctatgatgtt	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99580717	A	A	99580717	3	1	9	1	0	0	0	0	1	0	0	0	18284	681	24	2	515	2	ZNF782	9	99580717	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55315	99580717	41632714	10206	18357											
ZNF782	158431	broad.mit.edu	37	chr9	99580855	99580855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatggctgaaagatttccCgcattcattacattcaaaag	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99580855	A	A	99580855	3	1	9	1	0	0	0	0	1	0	0	0	18284	652	23	1	653	1	ZNF782	9	99580855	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138	99580855	41632576	10207	18358											
FAM22G	441457	broad.mit.edu	37	chr9	99691237	99691237	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagtcaggtcactctctGggtcctgcccttgacttttt	10	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99691237	T	T	99691237	1	4	9	0	1	0	0	0	0	0	0	0	5593	1363	47	2		2	FAM22G	9	99691237	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	110382	99691237	41522194	10208	18359											
ZNF322B	387328	broad.mit.edu	37	chr9	99961601	99961601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaggtttctccccagtatGggttctctcacacataataa	6	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99961601	T	T	99961601	3	4	9	1	0	0	0	0	1	0	0	0	17968	1348	47	2	1019	2	ZNF322B	9	99961601	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	270364	99961601	41251830	10209	18360											
KIAA1529	57653	broad.mit.edu	37	chr9	100088821	100088821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgcttcctcttgttttGggggtggcttccaggtgcag	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100088821	T	T	100088821	1	4	9	0	1	0	0	0	0	0	0	0	8310	1363	47	2		2	KIAA1529	9	100088821	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	127220	100088821	41124610	10210	18361											
KIAA1529	57653	broad.mit.edu	37	chr9	100090253	100090253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatctccttggggtcagGggtgtggttcctagctgggg	17	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100090253	T	T	100090253	1	4	9	0	1	0	0	0	0	0	0	0	8310	1247	43	2		2	KIAA1529	9	100090253	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1432	100090253	41123178	10211	18362											
KIAA1529	57653	broad.mit.edu	37	chr9	100119890	100119890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctagaaacaaaatctcGgaacctctggttttctaggt	7	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100119890	T	T	100119890	1	4	9	0	1	0	0	0	0	0	0	0	8310	1131	39	1		1	KIAA1529	9	100119890	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29637	100119890	41093541	10212	18363											
KIAA1529	57653	broad.mit.edu	37	chr9	100133099	100133099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccagtccaggcatgctcCaaatatagcccgatggacag	10	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100133099	A	A	100133099	1	1	9	0	1	0	0	0	0	0	0	0	8310	609	21	2		2	KIAA1529	9	100133099	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13209	100133099	41080332	10213	18364											
TDRD7	23424	broad.mit.edu	37	chr9	100235689	100235689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgcaaagacttgttatGggatgtttaggtagataccc	10	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100235689	T	T	100235689	1	4	9	0	1	0	0	0	0	0	0	0	15857	1363	47	2		2	TDRD7	9	100235689	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	102590	100235689	40977742	10214	18365											
TMOD1	7111	broad.mit.edu	37	chr9	100308587	100308587	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaaggagtttaaggacCgagaagatctggtcccctac	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100308587	A	A	100308587	2	1	9	1	0	0	0	0	0	0	0	1	16356	644	23	1		1	TMOD1	9	100308587	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72898	100308587	40904844	10215	18366											
TSTD2	158427	broad.mit.edu	37	chr9	100373893	100373893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtcatccttaaacaatGggaaggaaagcatgacttcc	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100373893	T	T	100373893	3	4	9	1	0	0	0	0	1	0	0	0	16801	1348	47	2	882	2	TSTD2	9	100373893	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65306	100373893	40839538	10216	18367											
TSTD2	158427	broad.mit.edu	37	chr9	100387963	100387963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagaatgaaaatcttacCttatcagctcatcagggtta	6	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100387963	A	A	100387963	3	1	9	1	0	0	0	0	1	0	0	0	16801	695	24	2	1100	2	TSTD2	9	100387963	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14070	100387963	40825468	10217	18368											
TSTD2	158427	broad.mit.edu	37	chr9	100389746	100389746	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctttaagactgctgctGggattaataagactcatatc	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100389746	T	T	100389746	2	4	9	1	0	0	0	0	0	0	0	1	16801	1335	47	2		2	TSTD2	9	100389746	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1783	100389746	40823685	10218	18369											
NCBP1	4686	broad.mit.edu	37	chr9	100405471	100405471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggttttcttgttatactGggttcttaaatcagtgcacg	11	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100405471	T	T	100405471	1	4	9	0	1	0	0	0	0	0	0	0	10306	1363	47	2		2	NCBP1	9	100405471	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15725	100405471	40807960	10219	18370											
NCBP1	4686	broad.mit.edu	37	chr9	100405682	100405682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgttatgactactgttGggatggagggaaaaggtgaa	16	2	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100405682	T	T	100405682	1	4	9	0	1	0	0	0	0	0	0	0	10306	1363	47	2		2	NCBP1	9	100405682	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	211	100405682	40807749	10220	18371											
XPA	7507	broad.mit.edu	37	chr9	100444702	100444702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcctattcaggaaggcGggaacaacctctaaagtaaa	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100444702	T	T	100444702	1	4	9	0	1	0	0	0	0	0	0	0	17567	1131	39	1		1	XPA	9	100444702	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39020	100444702	40768729	10221	18372											
C9orf156	51531	broad.mit.edu	37	chr9	100672565	100672565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaatccactgctatctccCtgtgcataggaaatgcttgc	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100672565	A	A	100672565	3	1	9	1	0	0	0	0	1	0	0	0	2491	681	24	2	590	2	C9orf156	9	100672565	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	227863	100672565	40540866	10222	18373											
HEMGN	55363	broad.mit.edu	37	chr9	100692509	100692509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaatattcttcaagctGggatgtttcttggtatattt	10	4	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100692509	T	T	100692509	3	4	9	1	0	0	0	0	1	0	0	0	7117	1357	47	2	294	2	HEMGN	9	100692509	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19944	100692509	40520922	10223	18374											
HEMGN	55363	broad.mit.edu	37	chr9	100692664	100692664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggattgttttatgagagGgggctttaggcacaataatt	12	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100692664	T	T	100692664	3	4	9	1	0	0	0	0	1	0	0	0	7117	1232	43	2	449	2	HEMGN	9	100692664	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	155	100692664	40520767	10224	18375											
NANS	54187	broad.mit.edu	37	chr9	100840592	100840592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgtaccagcgcataccCgctccagcctgaggacgtca	11	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100840592	A	A	100840592	3	1	9	1	0	0	0	0	1	0	0	0	10249	652	23	1	580	1	NANS	9	100840592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147928	100840592	40372839	10225	18376											
TRIM14	9830	broad.mit.edu	37	chr9	100857228	100857228	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttaaagaagctcttgacGggctcaaaggagaggggcac	13	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100857228	T	T	100857228	2	4	9	1	0	0	0	0	0	0	0	1	16613	1103	39	1		1	TRIM14	9	100857228	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16636	100857228	40356203	10226	18377											
CORO2A	7464	broad.mit.edu	37	chr9	100890428	100890428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcctgtcacatttgcctGggcctcttctctgccttcct	7	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100890428	T	T	100890428	1	4	9	0	1	0	0	0	0	0	0	0	3788	1363	47	2		2	CORO2A	9	100890428	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	33200	100890428	40323003	10227	18378											
CORO2A	7464	broad.mit.edu	37	chr9	100895354	100895354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcgggggtcaataaccCgaatcttgcggtctttgcag	12	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100895354	A	A	100895354	3	1	9	1	0	0	0	0	1	0	0	0	3788	652	23	1	995	1	CORO2A	9	100895354	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4926	100895354	40318077	10228	18379											
TBC1D2	55357	broad.mit.edu	37	chr9	100971504	100971504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggtgacagggaggaccCcaggccaggttcctgccctg	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100971504	A	A	100971504	1	1	9	0	1	0	0	0	0	0	0	0	15727	638	22	2		2	TBC1D2	9	100971504	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	76150	100971504	40241927	10229	18380											
GABBR2	9568	broad.mit.edu	37	chr9	101216528	101216528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggggattgggggaatccCaagttatactcggcagggac	15	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101216528	A	A	101216528	1	1	9	0	1	0	0	0	0	0	0	0	6216	609	21	2		2	GABBR2	9	101216528	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	245024	101216528	39996903	10230	18381											
ANKS6	203286	broad.mit.edu	37	chr9	101547072	101547072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggttgggagaatgtagccCtatattcttaaatatccaaa	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101547072	A	A	101547072	1	1	9	0	1	0	0	0	0	0	0	0	692	696	24	2		2	ANKS6	9	101547072	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	330544	101547072	39666359	10231	18382											
GALNT12	79695	broad.mit.edu	37	chr9	101599335	101599335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcaagctccctactccCgcaacaaggctctggccaac	7	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101599335	A	A	101599335	3	1	9	1	0	0	0	0	1	0	0	0	6272	652	23	1	1139	1	GALNT12	9	101599335	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52263	101599335	39614096	10232	18383											
GALNT12	79695	broad.mit.edu	37	chr9	101602321	101602321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagagaggaagcagctccGggacaagctccagtgtaaag	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101602321	T	T	101602321	3	4	9	1	0	0	0	0	1	0	0	0	6272	1116	39	1	1276	1	GALNT12	9	101602321	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2986	101602321	39611110	10233	18384											
GALNT12	79695	broad.mit.edu	37	chr9	101611281	101611281	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaaatgtgtccaggctgcGaggaaggagtcgagtgacag	16	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101611281	T	T	101611281	2	4	9	1	0	0	0	0	0	0	0	1	6272	1045	37	3		3	GALNT12	9	101611281	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8960	101611281	39602150	10234	18385											
COL15A1	1306	broad.mit.edu	37	chr9	101767130	101767130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccttaccacagtgtggtGgatcagcatcatggggcact	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101767130	T	T	101767130	1	4	9	0	1	0	0	0	0	0	0	0	3704	1363	47	2		2	COL15A1	9	101767130	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	155849	101767130	39446301	10235	18386											
COL15A1	1306	broad.mit.edu	37	chr9	101801036	101801036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggtatctacagctgcccCagaatgtggcttttacccag	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101801036	A	A	101801036	1	1	9	0	1	0	0	0	0	0	0	0	3704	609	21	2		2	COL15A1	9	101801036	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33906	101801036	39412395	10236	18387											
COL15A1	1306	broad.mit.edu	37	chr9	101804293	101804293	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatgcattttaatcttaacGaacaaccaaatactatataa	2	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101804293	T	T	101804293	1	4	9	0	1	0	0	0	0	0	0	0	3704	1073	37	3		3	COL15A1	9	101804293	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3257	101804293	39409138	10237	18388											
COL15A1	1306	broad.mit.edu	37	chr9	101810112	101810112	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagaatttggccttccCgggcgacctgtaggtatcag	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101810112	A	A	101810112	2	1	9	1	0	0	0	0	0	0	0	1	3704	639	23	1		1	COL15A1	9	101810112	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5819	101810112	39403319	10238	18389											
COL15A1	1306	broad.mit.edu	37	chr9	101817450	101817450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtgagtatttctctacCaatatttggcctgtgttttt	9	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101817450	A	A	101817450	1	1	9	0	1	0	0	0	0	0	0	0	3704	609	21	2		2	COL15A1	9	101817450	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7338	101817450	39395981	10239	18390											
COL15A1	1306	broad.mit.edu	37	chr9	101817636	101817636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggcctccaggcctgccCggaaatccaggcccggctgt	13	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101817636	A	A	101817636	2	1	9	1	0	0	0	0	0	0	0	1	3704	639	23	1		1	COL15A1	9	101817636	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	186	101817636	39395795	10240	18391											
TGFBR1	7046	broad.mit.edu	37	chr9	101908911	101908911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaattgctctcctctccCccagtagtttgtcatgagca	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101908911	A	A	101908911	1	1	9	0	1	0	0	0	0	0	0	0	15944	638	22	2		2	TGFBR1	9	101908911	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	91275	101908911	39304520	10241	18392											
ALG2	85365	broad.mit.edu	37	chr9	101980242	101980242	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagtttggtaacatatcGgtagagctgttctgtaaatg	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101980242	T	T	101980242	2	4	9	1	0	0	0	0	0	0	0	1	519	1124	39	1		1	ALG2	9	101980242	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	71331	101980242	39233189	10242	18393											
ALG2	85365	broad.mit.edu	37	chr9	101980370	101980370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttctgagaagtgcaccGggtcaggctcacacagaaac	11	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101980370	T	T	101980370	3	4	9	1	0	0	0	0	1	0	0	0	519	1116	39	1	157	1	ALG2	9	101980370	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	128	101980370	39233061	10243	18394											
ALG2	85365	broad.mit.edu	37	chr9	101980764	101980764	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtcagatttttcttcctttCgtatctgttgatggagagca	9	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101980764	A	A	101980764	4	1	9	1	0	0	0	0	0	1	0	0	519	893	31	3	551	3	ALG2	9	101980764	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	394	101980764	39232667	10244	18395											
ERP44	23071	broad.mit.edu	37	chr9	102784449	102784449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcttcatcatcatccCattacgaaacaatttgaggg	5	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102784449	A	A	102784449	3	1	9	1	0	0	0	0	1	0	0	0	5285	594	21	2	906	2	ERP44	9	102784449	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	803685	102784449	38428982	10245	18396											
INVS	27130	broad.mit.edu	37	chr9	103014602	103014602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctggccatgtcagcacCgtgaagttattactggaaaa	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103014602	A	A	103014602	2	1	9	1	0	0	0	0	0	0	0	1	7857	639	23	1		1	INVS	9	103014602	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	230153	103014602	38198829	10246	18397											
INVS	27130	broad.mit.edu	37	chr9	103035206	103035206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgatccagttcatgttGgagcacggtgccctgtccat	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103035206	T	T	103035206	3	4	9	1	0	0	0	0	1	0	0	0	7857	1339	47	2	1674	2	INVS	9	103035206	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20604	103035206	38178225	10247	18398											
TEX10	54881	broad.mit.edu	37	chr9	103108976	103108976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataactgaaatccttcttacCgtagcctgaactgtgaactg	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103108976	A	A	103108976	3	1	9	1	0	0	0	0	1	0	0	0	15894	666	23	1	1948	1	TEX10	9	103108976	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73770	103108976	38104455	10248	18399											
MURC	347273	broad.mit.edu	37	chr9	103348321	103348321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaactagaatagtgacccCggagaggagagagaggctaa	14	6	0	6	rs144516649		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103348321	A	A	103348321	3	1	9	1	0	0	0	0	1	0	0	0	10081	652	23	1	689	1	MURC	9	103348321	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	239345	103348321	37865110	10249	18400											
LPPR1	54886	broad.mit.edu	37	chr9	103947820	103947820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaagttattccatcatccCgtgttttatatttgttgagg	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103947820	A	A	103947820	3	1	9	1	0	0	0	0	1	0	0	0	9011	652	23	1	46	1	LPPR1	9	103947820	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	599499	103947820	37265611	10250	18401											
LPPR1	54886	broad.mit.edu	37	chr9	104079716	104079716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccaagcctgaggatcccCgtggagtacccctaatggct	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104079716	A	A	104079716	3	1	9	1	0	0	0	0	1	0	0	0	9011	652	23	1	905	1	LPPR1	9	104079716	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131896	104079716	37133715	10251	18402											
LPPR1	54886	broad.mit.edu	37	chr9	104079804	104079804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaagcagttttagcaaacCaaacccacaggctgaacact	7	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104079804	A	A	104079804	1	1	9	0	1	0	0	0	0	0	0	0	9011	609	21	2		2	LPPR1	9	104079804	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	104079804	37133627	10252	18403											
BAAT	570	broad.mit.edu	37	chr9	104133566	104133566	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagaataaaacatgtctcCgttttcatcttccagtgatg	7	8	3	2	rs138929107		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104133566	A	A	104133566	4	1	9	1	0	0	0	0	0	1	0	0	1285	661	23	1	1147	1	BAAT	9	104133566	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53762	104133566	37079865	10253	18404											
ALDOB	229	broad.mit.edu	37	chr9	104192025	104192025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaagtgaggtgtgaatGgaggtgttcaccttgattcc	14	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104192025	T	T	104192025	1	4	9	0	1	0	0	0	0	0	0	0	508	1363	47	2		2	ALDOB	9	104192025	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	58459	104192025	37021406	10254	18405											
RNF20	56254	broad.mit.edu	37	chr9	104314720	104314720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctagtactgaggaccCgaaggatgagcctgcggagc	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104314720	A	A	104314720	3	1	9	1	0	0	0	0	1	0	0	0	13584	652	23	1	1632	1	RNF20	9	104314720	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122695	104314720	36898711	10255	18406											
RNF20	56254	broad.mit.edu	37	chr9	104319665	104319665	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcttccttcatcctttaGgaagaagaagcactcctctc	5	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104319665	T	T	104319665	5	4	9	1	0	0	0	0	0	0	1	0	13584	1014	35	2	2227	2	RNF20	9	104319665	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	4945	104319665	36893766	10256	18407											
RNF20	56254	broad.mit.edu	37	chr9	104324250	104324250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaaccagacaatgtacCcaagtgtgatgagattctga	9	7	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104324250	A	A	104324250	3	1	9	1	0	0	0	0	1	0	0	0	13584	623	22	2	2778	2	RNF20	9	104324250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4585	104324250	36889181	10257	18408											
GRIN3A	116443	broad.mit.edu	37	chr9	104433278	104433278	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccacattggctttcccatGgggtcatgttgaagattcca	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104433278	C	C	104433278	2	2	9	1	0	0	0	0	0	0	0	1	6849	1335	47	4		4	GRIN3A	9	104433278	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	109028	104433278	36780153	10258	18409											
GRIN3A	116443	broad.mit.edu	37	chr9	104448806	104448806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaagatttctgcaaagcGgacagataggggaattttac	11	6	2	2	rs28420755	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104448806	T	T	104448806	1	4	9	0	1	0	0	0	0	0	0	0	6849	1131	39	1		1	GRIN3A	9	104448806	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15528	104448806	36764625	10259	18410											
GRIN3A	116443	broad.mit.edu	37	chr9	104499641	104499641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgaccaagtcgagctcCatcatttcgccctggctctg	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104499641	A	A	104499641	3	1	9	1	0	0	0	0	1	0	0	0	6849	594	21	2	2762	2	GRIN3A	9	104499641	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50835	104499641	36713790	10260	18411											
SMC2	10592	broad.mit.edu	37	chr9	106876215	106876215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgagcttttaaaacttGgttttaatttattatgattt	7	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106876215	T	T	106876215	1	4	9	0	1	0	0	0	0	0	0	0	14897	1363	47	2		2	SMC2	9	106876215	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2376574	106876215	34337216	10261	18412											
SMC2	10592	broad.mit.edu	37	chr9	106889736	106889736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatcagcaaacataaacGggaggctgaagatggtgctg	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106889736	T	T	106889736	3	4	9	1	0	0	0	0	1	0	0	0	14897	1116	39	1	2839	1	SMC2	9	106889736	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13521	106889736	34323695	10262	18413											
SMC2	10592	broad.mit.edu	37	chr9	106891988	106891988	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacctctttggccaaccCaatagtgcctatgatttcaa	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106891988	A	A	106891988	2	1	9	1	0	0	0	0	0	0	0	1	14897	581	21	2		2	SMC2	9	106891988	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2252	106891988	34321443	10263	18414											
OR13F1	138805	broad.mit.edu	37	chr9	107266630	107266630	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaggtcatcatatttgcGgtgtgcttgctgatgtacct	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107266630	T	T	107266630	2	4	9	1	0	0	0	0	0	0	0	1	11035	1103	39	1		1	OR13F1	9	107266630	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	374642	107266630	33946801	10264	18415											
OR13C4	138804	broad.mit.edu	37	chr9	107288802	107288802	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttgtgtcttcctgtggccGagttcgttcgcaagatggtg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107288802	T	T	107288802	4	4	9	1	0	0	0	0	0	1	0	0	11030	1059	37	3	269	3	OR13C4	9	107288802	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22172	107288802	33924629	10265	18416											
OR13C3	138803	broad.mit.edu	37	chr9	107298248	107298248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacataaagaagatggtacCgtaaaatatgatcaccacag	7	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107298248	A	A	107298248	3	1	9	1	0	0	0	0	1	0	0	0	11029	652	23	1	200	1	OR13C3	9	107298248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9446	107298248	33915183	10266	18417											
OR13C3	138803	broad.mit.edu	37	chr9	107298497	107298497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattgataatattattccCacagaaaggcagtctcatgg	8	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107298497	A	A	107298497	3	1	9	1	0	0	0	0	1	0	0	0	11029	594	21	2	449	2	OR13C3	9	107298497	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	249	107298497	33914934	10267	18418											
OR13C2	392376	broad.mit.edu	37	chr9	107367099	107367099	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtagcatccaagtcatcCgaattaagtgtctctttaga	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107367099	A	A	107367099	2	1	9	1	0	0	0	0	0	0	0	1	11028	639	23	1		1	OR13C2	9	107367099	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68602	107367099	33846332	10268	18419											
OR13C9	286362	broad.mit.edu	37	chr9	107380122	107380122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcagatagccacatagcGgtcaaaggccatcatgccca	10	12	2	1	rs77624771	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107380122	T	T	107380122	3	4	9	1	0	0	0	0	1	0	0	0	11033	1116	39	1	595	1	OR13C9	9	107380122	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13023	107380122	33833309	10269	18420											
NIPSNAP3B	55335	broad.mit.edu	37	chr9	107528830	107528830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtatggtaaagagtcatcCagttttagtattcagtatag	9	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107528830	A	A	107528830	1	1	9	0	1	0	0	0	0	0	0	0	10526	609	21	2		2	NIPSNAP3B	9	107528830	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	148708	107528830	33684601	10270	18421											
ABCA1	19	broad.mit.edu	37	chr9	107549224	107549224	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaattccacaagaaccgccGggctttgggatccatgcctg	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107549224	T	T	107549224	2	4	9	1	0	0	0	0	0	0	0	1	28	1115	39	1		1	ABCA1	9	107549224	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20394	107549224	33664207	10271	18422											
ABCA1	19	broad.mit.edu	37	chr9	107555134	107555134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaattctctgtctttccCgcctcacatcttcatcttca	3	15	7	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107555134	A	A	107555134	3	1	9	1	0	0	0	0	1	0	0	0	28	652	23	1	1131	1	ABCA1	9	107555134	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5910	107555134	33658297	10272	18423											
ABCA1	19	broad.mit.edu	37	chr9	107576401	107576401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgccctaacagacctGggtctatgtcagaatcattt	8	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107576401	T	T	107576401	3	4	9	1	0	0	0	0	1	0	0	0	28	1348	47	2	2982	2	ABCA1	9	107576401	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21267	107576401	33637030	10273	18424											
ABCA1	19	broad.mit.edu	37	chr9	107578466	107578466	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccataactagaaatgccCaggtctgagagccggtcatc	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107578466	G	G	107578466	2	3	9	1	0	0	0	0	0	0	0	1	28	581	21	4		4	ABCA1	9	107578466	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2065	107578466	33634965	10274	18425											
ABCA1	19	broad.mit.edu	37	chr9	107581906	107581906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcccatattcccctgcGggagtaagggtccacaccag	10	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107581906	T	T	107581906	3	4	9	1	0	0	0	0	1	0	0	0	28	1116	39	1	3699	1	ABCA1	9	107581906	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3440	107581906	33631525	10275	18426											
ABCA1	19	broad.mit.edu	37	chr9	107582281	107582281	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccatctgctccatctcCgccttcacgtgcttctcaga	8	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107582281	A	A	107582281	2	1	9	1	0	0	0	0	0	0	0	1	28	639	23	1		1	ABCA1	9	107582281	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	375	107582281	33631150	10276	18427											
ABCA1	19	broad.mit.edu	37	chr9	107620843	107620843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatgttggaacgaagtactCgctctgctgcagccagtttc	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107620843	A	A	107620843	3	1	9	1	0	0	0	0	1	0	0	0	28	884	31	3	6281	3	ABCA1	9	107620843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38562	107620843	33592588	10277	18428											
ABCA1	19	broad.mit.edu	37	chr9	107623880	107623880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaccattacaaggacaaGggtttattcatttctttcca	5	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107623880	T	T	107623880	1	4	9	0	1	0	0	0	0	0	0	0	28	1015	35	2		2	ABCA1	9	107623880	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3037	107623880	33589551	10278	18429											
SLC44A1	23446	broad.mit.edu	37	chr9	108120644	108120644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctatccatgattttgatGgtgataatcaggtatatatc	8	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108120644	T	T	108120644	3	4	9	1	0	0	0	0	1	0	0	0	14749	1348	47	2	716	2	SLC44A1	9	108120644	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	496764	108120644	33092787	10279	18430											
SLC44A1	23446	broad.mit.edu	37	chr9	108123571	108123571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatagctgaagacaatcttcGggccctcctcatttatgcca	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108123571	T	T	108123571	3	4	9	1	0	0	0	0	1	0	0	0	14749	1116	39	1	890	1	SLC44A1	9	108123571	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2927	108123571	33089860	10280	18431											
SLC44A1	23446	broad.mit.edu	37	chr9	108125247	108125247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctcttgtcttgttttGggtgtactggatcatgacac	10	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108125247	T	T	108125247	3	4	9	1	0	0	0	0	1	0	0	0	14749	1357	47	2	1080	2	SLC44A1	9	108125247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1676	108125247	33088184	10281	18432											
FKTN	2218	broad.mit.edu	37	chr9	108397460	108397460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagattcctgtaaagacgtGggactggaagcgctctcctc	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108397460	T	T	108397460	3	4	9	1	0	0	0	0	1	0	0	0	5976	1357	47	2	1335	2	FKTN	9	108397460	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	272213	108397460	32815971	10282	18433											
FKTN	2218	broad.mit.edu	37	chr9	108397482	108397482	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactggaagcgctctcctccCaatgtgcaacccaatggaat	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108397482	A	A	108397482	2	1	9	1	0	0	0	0	0	0	0	1	5976	581	21	2		2	FKTN	9	108397482	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	108397482	32815949	10283	18434											
TMEM38B	55151	broad.mit.edu	37	chr9	108521691	108521691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattctactgagagactacGgataagcaatccaggatttc	9	8	1	3	rs149599122	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108521691	T	T	108521691	1	4	9	0	1	0	0	0	0	0	0	0	16283	1131	39	1		1	TMEM38B	9	108521691	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	124209	108521691	32691740	10284	18435											
ZNF462	58499	broad.mit.edu	37	chr9	109687577	109687577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtcacatagaaaacatcCacttatctggaaagacagct	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109687577	A	A	109687577	3	1	9	1	0	0	0	0	1	0	0	0	18053	594	21	2	1390	2	ZNF462	9	109687577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1165886	109687577	31525854	10285	18436											
ZNF462	58499	broad.mit.edu	37	chr9	109687620	109687620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaatgtgacgaatgtcCgtttacttgcaagagctcgt	9	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109687620	A	A	109687620	3	1	9	1	0	0	0	0	1	0	0	0	18053	652	23	1	1433	1	ZNF462	9	109687620	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	109687620	31525811	10286	18437											
ZNF462	58499	broad.mit.edu	37	chr9	109688101	109688101	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaattcgaggggcagccCtcaagcctaccattggaaaa	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109688101	A	A	109688101	2	1	9	1	0	0	0	0	0	0	0	1	18053	668	24	2		2	ZNF462	9	109688101	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	481	109688101	31525330	10287	18438											
ZNF462	58499	broad.mit.edu	37	chr9	109688260	109688260	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctctagatttgtcaccCgtgaagaagagaaccaggat	9	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109688260	A	A	109688260	2	1	9	1	0	0	0	0	0	0	0	1	18053	639	23	1		1	ZNF462	9	109688260	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	159	109688260	31525171	10288	18439											
ZNF462	58499	broad.mit.edu	37	chr9	109689872	109689872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaatgcagatgtgatcCggcagcatacggccaccatt	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109689872	A	A	109689872	2	1	9	1	0	0	0	0	0	0	0	1	18053	643	23	1		1	ZNF462	9	109689872	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1612	109689872	31523559	10289	18440											
ZNF462	58499	broad.mit.edu	37	chr9	109690018	109690018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctcatatacctccccCtacttctatgcactgaggaa	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109690018	A	A	109690018	2	1	9	1	0	0	0	0	0	0	0	1	18053	668	24	2		2	ZNF462	9	109690018	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	146	109690018	31523413	10290	18441											
ZNF462	58499	broad.mit.edu	37	chr9	109690612	109690612	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccccataccagtgcacGgtatgccaatctgagtataa	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109690612	T	T	109690612	2	4	9	1	0	0	0	0	0	0	0	1	18053	1103	39	1		1	ZNF462	9	109690612	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	594	109690612	31522819	10291	18442											
ZNF462	58499	broad.mit.edu	37	chr9	109694775	109694775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccctggccatgtttaccCgcgaggacaagtacagctgc	12	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109694775	A	A	109694775	3	1	9	1	0	0	0	0	1	0	0	0	18053	652	23	1	6075	1	ZNF462	9	109694775	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4163	109694775	31518656	10292	18443											
ZNF462	58499	broad.mit.edu	37	chr9	109701184	109701184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgttctatttcttgtcacCatcctcttccaggtgagcat	6	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109701184	A	A	109701184	1	1	9	0	1	0	0	0	0	0	0	0	18053	609	21	2		2	ZNF462	9	109701184	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6409	109701184	31512247	10293	18444											
ZNF462	58499	broad.mit.edu	37	chr9	109701221	109701221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcctacaagtgttcttGgtgctcattctccaccatga	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109701221	T	T	109701221	3	4	9	1	0	0	0	0	1	0	0	0	18053	1357	47	2	6282	2	ZNF462	9	109701221	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	109701221	31512210	10294	18445											
ZNF462	58499	broad.mit.edu	37	chr9	109701237	109701237	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttggtgctcattctccacCatgacaatcagccagctgaa	7	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109701237	A	A	109701237	2	1	9	1	0	0	0	0	0	0	0	1	18053	581	21	2		2	ZNF462	9	109701237	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	109701237	31512194	10295	18446											
ZNF462	58499	broad.mit.edu	37	chr9	109736446	109736446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactatgcacgtggaagctGggcactcagcagttcccgag	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109736446	T	T	109736446	3	4	9	1	0	0	0	0	1	0	0	0	18053	1348	47	2	6754	2	ZNF462	9	109736446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35209	109736446	31476985	10296	18447											
RAD23B	5887	broad.mit.edu	37	chr9	110081079	110081079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaactgagatcatgtcaatGggctatgaacgagagcaagt	12	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110081079	T	T	110081079	3	4	9	1	0	0	0	0	1	0	0	0	13091	1348	47	2	622	2	RAD23B	9	110081079	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	344633	110081079	31132352	10297	18448											
KLF4	9314	broad.mit.edu	37	chr9	110247959	110247959	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggctccttccctcatcGggaagacagtgtgaaaagta	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110247959	T	T	110247959	1	4	9	0	1	0	0	0	0	0	0	0	8419	1131	39	1		1	KLF4	9	110247959	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	166880	110247959	30965472	10298	18449											
ACTL7A	10881	broad.mit.edu	37	chr9	111625337	111625337	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accggaaggctggactacgcGggctctgacctgacagccta	13	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111625337	T	T	111625337	2	4	9	1	0	0	0	0	0	0	0	1	200	1103	39	1		1	ACTL7A	9	111625337	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1377378	111625337	29588094	10299	18450											
ACTL7A	10881	broad.mit.edu	37	chr9	111625657	111625657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgacatcgccctcaaacGggacctcatggggaacatcc	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111625657	T	T	111625657	3	4	9	1	0	0	0	0	1	0	0	0	200	1116	39	1	1057	1	ACTL7A	9	111625657	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	320	111625657	29587774	10300	18451											
ACTL7A	10881	broad.mit.edu	37	chr9	111625857	111625857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaccattgtgggtccacCgctttgagtacgaggaacac	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111625857	A	A	111625857	3	1	9	1	0	0	0	0	1	0	0	0	200	652	23	1	1257	1	ACTL7A	9	111625857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	200	111625857	29587574	10301	18452											
IKBKAP	8518	broad.mit.edu	37	chr9	111631421	111631421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaggctcagcttccactGggttcttctgttgatctttg	10	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111631421	T	T	111631421	3	4	9	1	0	0	0	0	1	0	0	0	7680	1357	47	2	29	2	IKBKAP	9	111631421	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5564	111631421	29582010	10302	18453											
IKBKAP	8518	broad.mit.edu	37	chr9	111693348	111693348	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccgtcccctgttcagttcGgagagagaagcactgaggat	12	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111693348	C	C	111693348	3	2	9	1	0	0	0	0	1	0	0	0	7680	1124	39	4	4063	4	IKBKAP	9	111693348	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61927	111693348	29520083	10303	18454											
CTNNAL1	8727	broad.mit.edu	37	chr9	111706128	111706128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaacaagttataacagccCgcaacaaaactccatcttta	3	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111706128	A	A	111706128	1	1	9	0	1	0	0	0	0	0	0	0	4049	667	23	1		1	CTNNAL1	9	111706128	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12780	111706128	29507303	10304	18455											
CTNNAL1	8727	broad.mit.edu	37	chr9	111745535	111745535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaatgccactttcatacGgtcaaatactccttctttgt	4	12	3	0	rs138462885		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111745535	T	T	111745535	3	4	9	1	0	0	0	0	1	0	0	0	4049	1116	39	1	1470	1	CTNNAL1	9	111745535	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39407	111745535	29467896	10305	18456											
EPB41L4B	54566	broad.mit.edu	37	chr9	111945046	111945046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaaagtatcaggaaacGggttcattgtatcaaccggg	13	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111945046	T	T	111945046	3	4	9	1	0	0	0	0	1	0	0	0	5198	1116	39	1	264	1	EPB41L4B	9	111945046	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	199511	111945046	29268385	10306	18457											
PTPN3	5774	broad.mit.edu	37	chr9	112225661	112225661	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttctctttgggtaactcCgaggtgcgtatattattaat	9	6	1	0	rs145689613	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112225661	A	A	112225661	2	1	9	1	0	0	0	0	0	0	0	1	12897	639	23	1		1	PTPN3	9	112225661	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	280615	112225661	28987770	10307	18458											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112687380	112687380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtaagtgctctctgcccCgactgtagatgaatgtttta	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112687380	A	A	112687380	1	1	9	0	1	0	0	0	0	0	0	0	11504	667	23	1		1	PALM2-AKAP2	9	112687380	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	461719	112687380	28526051	10308	18459											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112924409	112924409	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttgcaaggtgacttcCgaggtacttttcaatttgtt	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112924409	A	A	112924409	2	1	9	1	0	0	0	0	0	0	0	1	11504	639	23	1		1	PALM2-AKAP2	9	112924409	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	237029	112924409	28289022	10309	18460											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112930695	112930695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtcctcgaggccacacGggttaatcgaagaaagagcg	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112930695	T	T	112930695	3	4	9	1	0	0	0	0	1	0	0	0	11504	1116	39	1	3272	1	PALM2-AKAP2	9	112930695	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6286	112930695	28282736	10310	18461											
SVEP1	79987	broad.mit.edu	37	chr9	113141702	113141702	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccctccaacatgtatcCactgtaacatgagtaggtga	8	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113141702	A	A	113141702	4	1	9	1	0	0	0	0	0	1	0	0	15538	603	21	2	402	2	SVEP1	9	113141702	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	211007	113141702	28071729	10311	18462											
SVEP1	79987	broad.mit.edu	37	chr9	113148215	113148215	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtgtccacgtctcgtcGgggttgcaggtaatgatgcc	14	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113148215	T	T	113148215	2	4	9	1	0	0	0	0	0	0	0	1	15538	1103	39	1		1	SVEP1	9	113148215	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6513	113148215	28065216	10312	18463											
SVEP1	79987	broad.mit.edu	37	chr9	113166721	113166721	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatatgtgttatgttttcCgggagaggacattttttagg	12	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113166721	A	A	113166721	2	1	9	1	0	0	0	0	0	0	0	1	15538	639	23	1		1	SVEP1	9	113166721	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18506	113166721	28046710	10313	18464											
SVEP1	79987	broad.mit.edu	37	chr9	113168523	113168523	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggacccacaggacaaGggctcacagactggataagg	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113168523	T	T	113168523	2	4	9	1	0	0	0	0	0	0	0	1	15538	987	35	2		2	SVEP1	9	113168523	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1802	113168523	28044908	10314	18465											
SVEP1	79987	broad.mit.edu	37	chr9	113169123	113169123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccgtgcaagatgtagccCtcgtgacagtggaatgttac	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113169123	A	A	113169123	3	1	9	1	0	0	0	0	1	0	0	0	15538	680	24	2	2002	2	SVEP1	9	113169123	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	600	113169123	28044308	10315	18466											
SVEP1	79987	broad.mit.edu	37	chr9	113169471	113169471	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccattcagcacatatccGgggtcacactcatagtacaa	8	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113169471	T	T	113169471	2	4	9	1	0	0	0	0	0	0	0	1	15538	1103	39	1		1	SVEP1	9	113169471	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	348	113169471	28043960	10316	18467											
SVEP1	79987	broad.mit.edu	37	chr9	113170063	113170063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctattggcatacatgttGggatggaacttgaccatcct	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113170063	T	T	113170063	3	4	9	1	0	0	0	0	1	0	0	0	15538	1348	47	2	2942	2	SVEP1	9	113170063	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	592	113170063	28043368	10317	18468											
SVEP1	79987	broad.mit.edu	37	chr9	113171218	113171218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttcactctcaaagatcCtgccagttgtatgctgtgca	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113171218	A	A	113171218	3	1	9	1	0	0	0	0	1	0	0	0	15538	681	24	2	4097	2	SVEP1	9	113171218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1155	113171218	28042213	10318	18469											
SVEP1	79987	broad.mit.edu	37	chr9	113234498	113234498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggggcacttcttttaatcCgtgaggacttggcattgccg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113234498	A	A	113234498	3	1	9	1	0	0	0	0	1	0	0	0	15538	652	23	1	8146	1	SVEP1	9	113234498	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63280	113234498	27978933	10319	18470											
SVEP1	79987	broad.mit.edu	37	chr9	113242016	113242016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcaaaggacttgaaccCgtggtttgcaaaacgttttt	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113242016	A	A	113242016	3	1	9	1	0	0	0	0	1	0	0	0	15538	652	23	1	8473	1	SVEP1	9	113242016	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7518	113242016	27971415	10320	18471											
MUSK	4593	broad.mit.edu	37	chr9	113509957	113509957	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagagagtgtgaaagacCgagtgattgactcaagactg	12	6	2	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113509957	A	A	113509957	2	1	9	1	0	0	0	0	0	0	0	1	10083	644	23	1		1	MUSK	9	113509957	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	267941	113509957	27703474	10321	18472											
MUSK	4593	broad.mit.edu	37	chr9	113510092	113510092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatagcaggtaggatgcccCttcacatttgcgttgttcca	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113510092	A	A	113510092	1	1	9	0	1	0	0	0	0	0	0	0	10083	696	24	2		2	MUSK	9	113510092	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	135	113510092	27703339	10322	18473											
KIAA0368	23392	broad.mit.edu	37	chr9	114133957	114133957	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgcggtcagtatcattcCgagatatggaggtactagag	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114133957	A	A	114133957	4	1	9	1	0	0	0	0	0	1	0	0	8241	661	23	1	870	1	KIAA0368	9	114133957	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	623865	114133957	27079474	10323	18474											
KIAA0368	23392	broad.mit.edu	37	chr9	114135596	114135596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagaaatttaactcaccCgaactaaatggcccatagca	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114135596	A	A	114135596	3	1	9	1	0	0	0	0	1	0	0	0	8241	666	23	1	1295	1	KIAA0368	9	114135596	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1639	114135596	27077835	10324	18475											
KIAA0368	23392	broad.mit.edu	37	chr9	114173378	114173378	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagccaaataccttcccacCgtgaatcccaatgcaagcaa	5	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114173378	A	A	114173378	2	1	9	1	0	0	0	0	0	0	0	1	8241	639	23	1		1	KIAA0368	9	114173378	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37782	114173378	27040053	10325	18476											
KIAA0368	23392	broad.mit.edu	37	chr9	114173418	114173418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatccatgctgtatctccGggctctgaatttagcaaaaa	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114173418	T	T	114173418	3	4	9	1	0	0	0	0	1	0	0	0	8241	1116	39	1	3416	1	KIAA0368	9	114173418	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40	114173418	27040013	10326	18477											
KIAA0368	23392	broad.mit.edu	37	chr9	114246897	114246897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagattcctaaagttcacatGgaagtatctatgcctatgtg	8	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114246897	T	T	114246897	1	4	9	0	1	0	0	0	0	0	0	0	8241	1363	47	2		2	KIAA0368	9	114246897	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	73479	114246897	26966534	10327	18478											
ZNF483	158399	broad.mit.edu	37	chr9	114296627	114296627	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagtctcaaaaagctccCgactaggtgagttggtgaaa	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114296627	A	A	114296627	2	1	9	1	0	0	0	0	0	0	0	1	18063	644	23	1		1	ZNF483	9	114296627	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49730	114296627	26916804	10328	18479											
ZNF483	158399	broad.mit.edu	37	chr9	114304401	114304401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaaaatgcagtaagtgtGggataatctttattagaaga	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114304401	T	T	114304401	3	4	9	1	0	0	0	0	1	0	0	0	18063	1348	47	2	1204	2	ZNF483	9	114304401	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7774	114304401	26909030	10329	18480											
DNAJC25	548645	broad.mit.edu	37	chr9	114415379	114415379	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagttatttatacttacaGgtctacaagcaagaacaaga	6	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114415379	T	T	114415379	5	4	9	1	0	0	0	0	0	0	1	0	4683	1014	35	2	974	2	DNAJC25	9	114415379	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	110978	114415379	26798052	10330	18481											
C9orf84	158401	broad.mit.edu	37	chr9	114480649	114480649	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaatctgcctaataatgGgagctaacatttattattga	7	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114480649	T	T	114480649	1	4	9	0	1	0	0	0	0	0	0	0	2526	1247	43	2		2	C9orf84	9	114480649	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65270	114480649	26732782	10331	18482											
SUSD1	64420	broad.mit.edu	37	chr9	114904617	114904617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttggcaatgtaattttGgggactcccatgtgcccagg	11	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114904617	T	T	114904617	3	4	9	1	0	0	0	0	1	0	0	0	15525	1348	47	2	1606	2	SUSD1	9	114904617	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	423968	114904617	26308814	10332	18483											
SUSD1	64420	broad.mit.edu	37	chr9	114911577	114911577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttgttgttgtttgtggctCgatatccttccaggcaaatg	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114911577	A	A	114911577	3	1	9	1	0	0	0	0	1	0	0	0	15525	884	31	3	1983	3	SUSD1	9	114911577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6960	114911577	26301854	10333	18484											
ROD1	9991	broad.mit.edu	37	chr9	115013272	115013272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagtaggaaggtctaagcGagtgaagtctctgcttttgt	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115013272	T	T	115013272	3	4	9	1	0	0	0	0	1	0	0	0	13630	1058	37	3	867	3	ROD1	9	115013272	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101695	115013272	26200159	10334	18485											
ROD1	9991	broad.mit.edu	37	chr9	115060195	115060195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaagctcatcagatcccCgctgaaaagcaaaaccaatg	7	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115060195	A	A	115060195	3	1	9	1	0	0	0	0	1	0	0	0	13630	666	23	1	1675	1	ROD1	9	115060195	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46923	115060195	26153236	10335	18486											
KIAA1958	158405	broad.mit.edu	37	chr9	115337393	115337393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgaagagttcctgtccCatctgcccagccaggtctcc	8	17	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115337393	A	A	115337393	3	1	9	1	0	0	0	0	1	0	0	0	8334	594	21	2	1035	2	KIAA1958	9	115337393	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	277198	115337393	25876038	10336	18487											
SLC46A2	57864	broad.mit.edu	37	chr9	115652674	115652674	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcggtcgctgagccatccCagcccgtaggcggacagcag	14	14	0	1	rs113997864	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115652674	A	A	115652674	2	1	9	1	0	0	0	0	0	0	0	1	14759	581	21	2		2	SLC46A2	9	115652674	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	315281	115652674	25560757	10337	18488											
ZFP37	7539	broad.mit.edu	37	chr9	115818884	115818884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatctccagtggtcgccCggcctctttggtcgtttccg	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115818884	A	A	115818884	3	1	9	1	0	0	0	0	1	0	0	0	17774	652	23	1	1823	1	ZFP37	9	115818884	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	166210	115818884	25394547	10338	18489											
FKBP15	23307	broad.mit.edu	37	chr9	115931683	115931683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtgggtccccctcctcGgggtctgaagtcagggacag	15	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115931683	T	T	115931683	2	4	9	1	0	0	0	0	0	0	0	1	5962	1103	39	1		1	FKBP15	9	115931683	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	112799	115931683	25281748	10339	18490											
FKBP15	23307	broad.mit.edu	37	chr9	115946016	115946016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccatcctagccaggcccCgtacctgtcattacctctga	7	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115946016	A	A	115946016	1	1	9	0	1	0	0	0	0	0	0	0	5962	667	23	1		1	FKBP15	9	115946016	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14333	115946016	25267415	10340	18491											
FKBP15	23307	broad.mit.edu	37	chr9	115969531	115969531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgcgaccagtattgtgGgagtgctcatggtggctggt	16	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115969531	T	T	115969531	3	4	9	1	0	0	0	0	1	0	0	0	5962	1232	43	2	3548	2	FKBP15	9	115969531	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23515	115969531	25243900	10341	18492											
PRPF4	9128	broad.mit.edu	37	chr9	116038960	116038960	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggattttggggaaagacGgacttaaagcagggatcgaa	15	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116038960	T	T	116038960	4	4	9	1	0	0	0	0	0	1	0	0	12676	1117	39	1	169	1	PRPF4	9	116038960	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69429	116038960	25174471	10342	18493											
PRPF4	9128	broad.mit.edu	37	chr9	116048497	116048497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctggctgagatgctttcCtttgtatttgataggagtgg	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116048497	A	A	116048497	1	1	9	0	1	0	0	0	0	0	0	0	12676	696	24	2		2	PRPF4	9	116048497	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9537	116048497	25164934	10343	18494											
PRPF4	9128	broad.mit.edu	37	chr9	116053353	116053353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaacagtattgtgttccCgtggaatgcaggccaggctt	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116053353	A	A	116053353	1	1	9	0	1	0	0	0	0	0	0	0	12676	667	23	1		1	PRPF4	9	116053353	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4856	116053353	25160078	10344	18495											
WDR31	114987	broad.mit.edu	37	chr9	116093243	116093243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaataaagttcatttcccGggaaacactgcaaaccccac	6	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116093243	T	T	116093243	1	4	9	0	1	0	0	0	0	0	0	0	17413	1131	39	1		1	WDR31	9	116093243	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39890	116093243	25120188	10345	18496											
BSPRY	54836	broad.mit.edu	37	chr9	116132365	116132365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatcatgtgtccttcccGgggcccctcttcccagtctt	8	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116132365	T	T	116132365	2	4	9	1	0	0	0	0	0	0	0	1	1541	1103	39	1		1	BSPRY	9	116132365	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39122	116132365	25081066	10346	18497											
ALAD	210	broad.mit.edu	37	chr9	116153206	116153206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtcagctgcggaacccCgctcgtcctaggggcagggg	17	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116153206	A	A	116153206	3	1	9	1	0	0	0	0	1	0	0	0	483	652	23	1	755	1	ALAD	9	116153206	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20841	116153206	25060225	10347	18498											
RGS3	5998	broad.mit.edu	37	chr9	116224230	116224230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctttctagttcctactGggagtgaacacaccttgcat	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116224230	T	T	116224230	1	4	9	0	1	0	0	0	0	0	0	0	13415	1363	47	2		2	RGS3	9	116224230	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	71024	116224230	24989201	10348	18499											
ZNF618	114991	broad.mit.edu	37	chr9	116764851	116764851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttgcacttggcactggcCctgtcattggcccggtagcc	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116764851	T	T	116764851	1	4	9	0	1	0	0	0	0	0	0	0	18169	638	22	4		4	ZNF618	9	116764851	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	540621	116764851	24448580	10349	18500											
AMBP	259	broad.mit.edu	37	chr9	116823220	116823220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaccatcaccagggacacCgcagtactctctgcactcct	6	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116823220	A	A	116823220	3	1	9	1	0	0	0	0	1	0	0	0	564	652	23	1	54	1	AMBP	9	116823220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58369	116823220	24390211	10350	18501											
AMBP	259	broad.mit.edu	37	chr9	116836385	116836385	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcaggaaaatggcatactCatcatagttggtgtggacca	12	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116836385	A	A	116836385	4	1	9	1	0	0	0	0	0	1	0	0	564	835	29	3	701	3	AMBP	9	116836385	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13165	116836385	24377046	10351	18502											
KIF12	113220	broad.mit.edu	37	chr9	116857483	116857483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccttccctgccaggcccCgcttaagtaccatgagggtg	10	15	0	1	rs56330248	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116857483	A	A	116857483	1	1	9	0	1	0	0	0	0	0	0	0	8343	667	23	1		1	KIF12	9	116857483	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21098	116857483	24355948	10352	18503											
COL27A1	85301	broad.mit.edu	37	chr9	116931069	116931069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagtgccacctacttccCgtccagttcctgccagagtc	8	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116931069	A	A	116931069	3	1	9	1	0	0	0	0	1	0	0	0	3717	652	23	1	1244	1	COL27A1	9	116931069	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73586	116931069	24282362	10353	18504											
COL27A1	85301	broad.mit.edu	37	chr9	116931125	116931125	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccatccagaggaacccGggaatgcccaggcccccacc	10	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931125	T	T	116931125	2	4	9	1	0	0	0	0	0	0	0	1	3717	1103	39	1		1	COL27A1	9	116931125	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	116931125	24282306	10354	18505											
COL27A1	85301	broad.mit.edu	37	chr9	116931211	116931211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccattcccacactagctcGgactgaggccaagataacca	7	15	0	2	rs141804767	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931211	T	T	116931211	3	4	9	1	0	0	0	0	1	0	0	0	3717	1116	39	1	1386	1	COL27A1	9	116931211	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86	116931211	24282220	10355	18506											
COL27A1	85301	broad.mit.edu	37	chr9	116956756	116956756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaggtttccagggacccCagttctcagggaagagggga	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116956756	A	A	116956756	1	1	9	0	1	0	0	0	0	0	0	0	3717	609	21	2		2	COL27A1	9	116956756	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25545	116956756	24256675	10356	18507											
COL27A1	85301	broad.mit.edu	37	chr9	116968013	116968013	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcagggtctttcttttccTtatgtttctctctgttcctt	8	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116968013	C	C	116968013	1	2	9	0	1	0	0	0	0	0	0	0	3717	1624	56	5		5	COL27A1	9	116968013	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	11257	116968013	24245418	10357	18508											
COL27A1	85301	broad.mit.edu	37	chr9	116971899	116971899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgggctgcggcaggttGggccagccacacctcactgc	16	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116971899	T	T	116971899	1	4	9	0	1	0	0	0	0	0	0	0	3717	1363	47	2		2	COL27A1	9	116971899	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3886	116971899	24241532	10358	18509											
COL27A1	85301	broad.mit.edu	37	chr9	116999977	116999977	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggatccattgggtttccCgggccccctggacccgaggt	13	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116999977	A	A	116999977	2	1	9	1	0	0	0	0	0	0	0	1	3717	639	23	1		1	COL27A1	9	116999977	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28078	116999977	24213454	10359	18510											
COL27A1	85301	broad.mit.edu	37	chr9	117071559	117071559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgagtttgccatcagccGggtccagatgaatttcctgc	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117071559	T	T	117071559	3	4	9	1	0	0	0	0	1	0	0	0	3717	1116	39	1	5475	1	COL27A1	9	117071559	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71582	117071559	24141872	10360	18511											
COL27A1	85301	broad.mit.edu	37	chr9	117071593	117071593	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcacctgctaagctcCgaggtgacccagcacatcac	8	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117071593	A	A	117071593	2	1	9	1	0	0	0	0	0	0	0	1	3717	639	23	1		1	COL27A1	9	117071593	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	117071593	24141838	10361	18512											
DFNB31	25861	broad.mit.edu	37	chr9	117169020	117169020	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccgagaagacagtgccCgagcaggaaggcatggagga	18	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117169020	A	A	117169020	2	1	9	1	0	0	0	0	0	0	0	1	4495	639	23	1		1	DFNB31	9	117169020	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	97427	117169020	24044411	10362	18513											
ATP6V1G1	9550	broad.mit.edu	37	chr9	117359862	117359862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccaggcattgggatccCgtggcagttgcagcactgaa	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117359862	A	A	117359862	3	1	9	1	0	0	0	0	1	0	0	0	1190	652	23	1	206	1	ATP6V1G1	9	117359862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	190842	117359862	23853569	10363	18514											
TNFSF8	944	broad.mit.edu	37	chr9	117668092	117668092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatatgtttaggtttcctGggcttggttactgaccttgg	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117668092	T	T	117668092	1	4	9	0	1	0	0	0	0	0	0	0	16434	1363	47	2		2	TNFSF8	9	117668092	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	308230	117668092	23545339	10364	18515											
TNC	3371	broad.mit.edu	37	chr9	117791708	117791708	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagttttggtagaagttctCgcgtccgtttttgcgtctca	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117791708	A	A	117791708	4	1	9	1	0	0	0	0	0	1	0	0	16393	893	31	3	521	3	TNC	9	117791708	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123616	117791708	23421723	10365	18516											
TNC	3371	broad.mit.edu	37	chr9	117808716	117808716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctatagcactgactgtctGggatcgccttcctttgctta	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117808716	T	T	117808716	3	4	9	1	0	0	0	0	1	0	0	0	16393	1357	47	2	1555	2	TNC	9	117808716	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17008	117808716	23404715	10366	18517											
TNC	3371	broad.mit.edu	37	chr9	117810495	117810495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagacagattacacagaaGgggaccaggaagaggaacaa	14	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117810495	T	T	117810495	1	4	9	0	1	0	0	0	0	0	0	0	16393	1015	35	2		2	TNC	9	117810495	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1779	117810495	23402936	10367	18518											
TNC	3371	broad.mit.edu	37	chr9	117819657	117819657	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaggagagattgaagctctCgggagttatgtcagaaacat	12	7	2	3	rs142772210		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117819657	A	A	117819657	4	1	9	1	0	0	0	0	0	1	0	0	16393	893	31	3	2307	3	TNC	9	117819657	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9162	117819657	23393774	10368	18519											
TNC	3371	broad.mit.edu	37	chr9	117826347	117826347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaattgggagtttccCctggagaaggacaaagaact	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117826347	A	A	117826347	3	1	9	1	0	0	0	0	1	0	0	0	16393	637	22	2	3185	2	TNC	9	117826347	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6690	117826347	23387084	10369	18520											
TNC	3371	broad.mit.edu	37	chr9	117827017	117827017	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtagcagccttgaggccCggtatgtccacagcccgaag	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117827017	A	A	117827017	2	1	9	1	0	0	0	0	0	0	0	1	16393	639	23	1		1	TNC	9	117827017	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	670	117827017	23386414	10370	18521											
TNC	3371	broad.mit.edu	37	chr9	117838798	117838798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgccattcctccattccaGggtgatgctgttatctgtct	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117838798	T	T	117838798	3	4	9	1	0	0	0	0	1	0	0	0	16393	991	35	2	3958	2	TNC	9	117838798	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11781	117838798	23374633	10371	18522											
PAPPA	5069	broad.mit.edu	37	chr9	119124852	119124852	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctctcttggtcctaactCtgtttctctgttgttcaggg	9	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119124852	A	A	119124852	1	1	9	0	1	0	0	0	0	0	0	0	11526	928	32	3		3	PAPPA	9	119124852	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1286054	119124852	22088579	10372	18523											
PAPPA	5069	broad.mit.edu	37	chr9	119144738	119144738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgcaactatgacggtgGggattgctgcacctccacag	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119144738	T	T	119144738	3	4	9	1	0	0	0	0	1	0	0	0	11526	1232	43	2	4824	2	PAPPA	9	119144738	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19886	119144738	22068693	10373	18524											
ASTN2	23245	broad.mit.edu	37	chr9	119488101	119488101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccttcttgctgggaaagtGgatgatgcaggtgagctctg	15	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119488101	T	T	119488101	3	4	9	1	0	0	0	0	1	0	0	0	1069	1348	47	2	1528	2	ASTN2	9	119488101	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	343363	119488101	21725330	10374	18525											
ASTN2	23245	broad.mit.edu	37	chr9	119495585	119495585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaggcttgacagagccCatcttggatctgctgaagac	14	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119495585	A	A	119495585	1	1	9	0	1	0	0	0	0	0	0	0	1069	609	21	2		2	ASTN2	9	119495585	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7484	119495585	21717846	10375	18526											
ASTN2	23245	broad.mit.edu	37	chr9	119625954	119625954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcagtcacgaactggccCgaaggaagacagcaggtcat	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119625954	A	A	119625954	3	1	9	1	0	0	0	0	1	0	0	0	1069	652	23	1	2355	1	ASTN2	9	119625954	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	130369	119625954	21587477	10376	18527											
ASTN2	23245	broad.mit.edu	37	chr9	119737507	119737507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacatctgcagggtcttcCgtgacgagcacatcggtctt	11	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119737507	A	A	119737507	2	1	9	1	0	0	0	0	0	0	0	1	1069	639	23	1		1	ASTN2	9	119737507	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	111553	119737507	21475924	10377	18528											
ASTN2	23245	broad.mit.edu	37	chr9	119770371	119770371	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggctcccatggctcacCggtttctgggtcgcagagct	12	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119770371	A	A	119770371	4	1	9	1	0	0	0	0	0	1	0	0	1069	666	23	1	2728	1	ASTN2	9	119770371	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32864	119770371	21443060	10378	18529											
TLR4	7099	broad.mit.edu	37	chr9	120474993	120474993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttattgcacagacttgcGggttctacatcaaatgcccc	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120474993	T	T	120474993	3	4	9	1	0	0	0	0	1	0	0	0	16076	1116	39	1	597	1	TLR4	9	120474993	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	704622	120474993	20738438	10379	18530											
TLR4	7099	broad.mit.edu	37	chr9	120475790	120475790	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatactcacaccagagttGctttcaatggcatcttcaat	5	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120475790	C	C	120475790	3	2	9	1	0	0	0	0	1	0	0	0	16076	1319	46	4	1394	4	TLR4	9	120475790	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	797	120475790	20737641	10380	18531											
TLR4	7099	broad.mit.edu	37	chr9	120476548	120476548	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactacagagactttattccCggtgtggccattgctgccaa	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476548	A	A	120476548	2	1	9	1	0	0	0	0	0	0	0	1	16076	639	23	1		1	TLR4	9	120476548	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	758	120476548	20736883	10381	18532											
DBC1	1620	broad.mit.edu	37	chr9	121929359	121929359	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccatggcaaggagtcccGggttagcagagtttggctgt	15	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121929359	T	T	121929359	1	4	9	0	1	0	0	0	0	0	0	0	4280	1131	39	1		1	DBC1	9	121929359	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1452811	121929359	19284072	10382	18533											
DBC1	1620	broad.mit.edu	37	chr9	121929407	121929407	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgactgtttgaggatctcCgtgttgtacaggtccaaggc	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121929407	A	A	121929407	2	1	9	1	0	0	0	0	0	0	0	1	4280	639	23	1		1	DBC1	9	121929407	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	121929407	19284024	10383	18534											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123177356	123177356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgccgttccaactgtttcCgtagcttctcatttgtttta	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123177356	A	A	123177356	3	1	9	1	0	0	0	0	1	0	0	0	3176	652	23	1	1466	1	CDK5RAP2	9	123177356	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1247949	123177356	18036075	10384	18535											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123199717	123199717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtgttcatgtgttgacGggagatgacacagatgccat	13	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123199717	T	T	123199717	3	4	9	1	0	0	0	0	1	0	0	0	3176	1116	39	1	1926	1	CDK5RAP2	9	123199717	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22361	123199717	18013714	10385	18536											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123210126	123210126	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatttcaagcagttctatcGagccgtttgtctagctcaca	7	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123210126	T	T	123210126	1	4	9	0	1	0	0	0	0	0	0	0	3176	1073	37	3		3	CDK5RAP2	9	123210126	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10409	123210126	18003305	10386	18537											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123210147	123210147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgtttgtctagctcacaGggaatacatttttcttggtg	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123210147	T	T	123210147	1	4	9	0	1	0	0	0	0	0	0	0	3176	1015	35	2		2	CDK5RAP2	9	123210147	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	123210147	18003284	10387	18538											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123210192	123210192	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattcagcaacgttttgtcGggcgttggcctcccctccat	9	15	1	0	rs149463541	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123210192	T	T	123210192	2	4	9	1	0	0	0	0	0	0	0	1	3176	1103	39	1		1	CDK5RAP2	9	123210192	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	123210192	18003239	10388	18539											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123298737	123298737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgctttccaaacgcaacCgaagagccttctccgtctct	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123298737	A	A	123298737	3	1	9	1	0	0	0	0	1	0	0	0	3176	652	23	1	5234	1	CDK5RAP2	9	123298737	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88545	123298737	17914694	10389	18540											
MEGF9	1955	broad.mit.edu	37	chr9	123367617	123367617	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatattgtcttctttcagctCgatggtccaaaagggggcat	11	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123367617	A	A	123367617	4	1	9	1	0	0	0	0	0	1	0	0	9557	893	31	3	152	3	MEGF9	9	123367617	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68880	123367617	17845814	10390	18541											
MEGF9	1955	broad.mit.edu	37	chr9	123367659	123367659	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtttccggttttggtactCgcggtacatatatacagccc	10	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123367659	A	A	123367659	4	1	9	1	0	0	0	0	0	1	0	0	9557	893	31	3	194	3	MEGF9	9	123367659	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	123367659	17845772	10391	18542											
MEGF9	1955	broad.mit.edu	37	chr9	123370275	123370275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggtcacattcaggttcCaattcactcgattctaaaag	6	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123370275	A	A	123370275	3	1	9	1	0	0	0	0	1	0	0	0	9557	593	21	2	715	2	MEGF9	9	123370275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2616	123370275	17843156	10392	18543											
FBXW2	26190	broad.mit.edu	37	chr9	123526906	123526906	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggcaaagaccaagccCgtgtcattgtgcccatccag	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123526906	A	A	123526906	2	1	9	1	0	0	0	0	0	0	0	1	5823	639	23	1		1	FBXW2	9	123526906	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	156631	123526906	17686525	10393	18544											
C5	727	broad.mit.edu	37	chr9	123785674	123785674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacgtctaccccctcaccCaatctaccttgatgggatat	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123785674	A	A	123785674	1	1	9	0	1	0	0	0	0	0	0	0	2303	609	21	2		2	C5	9	123785674	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	258768	123785674	17427757	10394	18545											
CEP110	11064	broad.mit.edu	37	chr9	123880614	123880614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattatatattggggtttgGggagattagatttcagaagc	12	2	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123880614	T	T	123880614	1	4	9	0	1	0	0	0	0	0	0	0	3275	1247	43	2		2	CEP110	9	123880614	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	94940	123880614	17332817	10395	18546											
CEP110	11064	broad.mit.edu	37	chr9	123921117	123921117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcaaacttactcttccCttttctttaatacaggtgac	4	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123921117	A	A	123921117	1	1	9	0	1	0	0	0	0	0	0	0	3275	696	24	2		2	CEP110	9	123921117	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	40503	123921117	17292314	10396	18547											
CEP110	11064	broad.mit.edu	37	chr9	123935941	123935941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgatatctctattttcCctctgagaaaggatgaacac	6	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123935941	A	A	123935941	1	1	9	0	1	0	0	0	0	0	0	0	3275	638	22	2		2	CEP110	9	123935941	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14824	123935941	17277490	10397	18548											
CEP110	11064	broad.mit.edu	37	chr9	123936007	123936007	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgcgtcaccgggaagacCgactcaaggttgccctttaa	10	12	2	1	rs149831066		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123936007	A	A	123936007	2	1	9	1	0	0	0	0	0	0	0	1	3275	644	23	1		1	CEP110	9	123936007	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	123936007	17277424	10398	18549											
CEP110	11064	broad.mit.edu	37	chr9	123937305	123937305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacttttcaggcccaactcCgacactgtatgtccaagcaa	6	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123937305	A	A	123937305	2	1	9	1	0	0	0	0	0	0	0	1	3275	644	23	1		1	CEP110	9	123937305	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1298	123937305	17276126	10399	18550											
GSN	2934	broad.mit.edu	37	chr9	124065184	124065184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatattgctctgatgtccCgtaggcaatgagtgcagcca	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124065184	A	A	124065184	1	1	9	0	1	0	0	0	0	0	0	0	6891	667	23	1		1	GSN	9	124065184	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	127879	124065184	17148247	10400	18551											
GSN	2934	broad.mit.edu	37	chr9	124083642	124083642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcattctgtacaactacCgccatggtggccgccagggg	11	13	2	0	rs116185403	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124083642	A	A	124083642	3	1	9	1	0	0	0	0	1	0	0	0	6891	652	23	1	1507	1	GSN	9	124083642	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18458	124083642	17129789	10401	18552											
DAB2IP	153090	broad.mit.edu	37	chr9	124329476	124329476	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccacacgccatggagccCgactcccttctggaccaaga	10	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124329476	A	A	124329476	2	1	9	1	0	0	0	0	0	0	0	1	4252	639	23	1		1	DAB2IP	9	124329476	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	245834	124329476	16883955	10402	18553											
DAB2IP	153090	broad.mit.edu	37	chr9	124545836	124545836	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcattagaaacaaaagccCgcttgctcgcttgctggaac	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124545836	A	A	124545836	1	1	9	0	1	0	0	0	0	0	0	0	4252	667	23	1		1	DAB2IP	9	124545836	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	216360	124545836	16667595	10403	18554											
NDUFA8	4702	broad.mit.edu	37	chr9	124906595	124906595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgatctcagggctgggatcCggtcttggtcttgagtgata	14	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124906595	A	A	124906595	2	1	9	1	0	0	0	0	0	0	0	1	10366	639	23	1		1	NDUFA8	9	124906595	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	360759	124906595	16306836	10404	18555											
RBM18	92400	broad.mit.edu	37	chr9	125023671	125023671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttactcggtaattttgGggtccaggttgccaatccat	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125023671	T	T	125023671	3	4	9	1	0	0	0	0	1	0	0	0	13228	1232	43	2	491	2	RBM18	9	125023671	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	117076	125023671	16189760	10405	18556											
MRRF	92399	broad.mit.edu	37	chr9	125033179	125033179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcttcagtcatggccttGggattaaagtgcttccgcat	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125033179	T	T	125033179	3	4	9	1	0	0	0	0	1	0	0	0	9944	1339	47	2	11	2	MRRF	9	125033179	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9508	125033179	16180252	10406	18557											
MRRF	92399	broad.mit.edu	37	chr9	125047592	125047592	+	Intron	SNP	C	A	A													atggccttgctaaaatctctCtccgtggtctcttttggaat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125047592	A	A	125047592	1	1	9	0	1	0	0	0	0	0	0	0	9944	928	32	3		3	MRRF	9	125047592	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14413	125047592	16165839	10407	18558	121	2									
MRRF	92399	broad.mit.edu	37	chr9	125047595	125047595	+	Intron	SNP	C	A	A													gccttgctaaaatctctctcCgtggtctcttttggaatgga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125047595	A	A	125047595	1	1	9	0	1	0	0	0	0	0	0	0	9944	667	23	1		1	MRRF	9	125047595	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3	125047595	16165836	10408	18559	121	2									
PTGS1	5742	broad.mit.edu	37	chr9	125140266	125140266	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtgactgcacccgcacGggctattccggccccaactg	11	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125140266	T	T	125140266	2	4	9	1	0	0	0	0	0	0	0	1	12861	1103	39	1		1	PTGS1	9	125140266	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	92671	125140266	16073165	10409	18560											
OR1J1	347168	broad.mit.edu	37	chr9	125239357	125239357	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgaatgggttcaacatGggagtgactgctgtgtatat	12	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125239357	T	T	125239357	2	4	9	1	0	0	0	0	0	0	0	1	11053	1335	47	2		2	OR1J1	9	125239357	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99091	125239357	15974074	10410	18561											
OR1N2	138882	broad.mit.edu	37	chr9	125315736	125315736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacttctgcctccatcccCaaaatgctggccaacattca	4	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125315736	A	A	125315736	2	1	9	1	0	0	0	0	0	0	0	1	11064	581	21	2		2	OR1N2	9	125315736	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76379	125315736	15897695	10411	18562											
OR1L8	138881	broad.mit.edu	37	chr9	125330632	125330632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggatgatgagcaggttcCctgttatggtgaccaggtac	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125330632	A	A	125330632	3	1	9	1	0	0	0	0	1	0	0	0	11061	623	22	2	808	2	OR1L8	9	125330632	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14896	125330632	15882799	10412	18563											
OR1L3	26735	broad.mit.edu	37	chr9	125437794	125437794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtagccatttgtaaccCattccattatgtcactgtta	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125437794	A	A	125437794	3	1	9	1	0	0	0	0	1	0	0	0	11058	594	21	2	388	2	OR1L3	9	125437794	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107162	125437794	15775637	10413	18564											
OR1L3	26735	broad.mit.edu	37	chr9	125437902	125437902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgtcctcctggtgaatcGgctcaccttttgtacatcaa	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125437902	T	T	125437902	3	4	9	1	0	0	0	0	1	0	0	0	11058	1116	39	1	496	1	OR1L3	9	125437902	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108	125437902	15775529	10414	18565											
OR1L6	392390	broad.mit.edu	37	chr9	125512414	125512414	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaggttatctcctatgtGggctgcctggcccagatgta	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125512414	T	T	125512414	2	4	9	1	0	0	0	0	0	0	0	1	11060	1335	47	2		2	OR1L6	9	125512414	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	74512	125512414	15701017	10415	18566											
OR5C1	392391	broad.mit.edu	37	chr9	125552071	125552071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctataccctggtcatccCgtctctcaacccactcatct	4	17	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125552071	A	A	125552071	3	1	9	1	0	0	0	0	1	0	0	0	11247	652	23	1	862	1	OR5C1	9	125552071	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39657	125552071	15661360	10416	18567											
RC3H2	54542	broad.mit.edu	37	chr9	125622237	125622237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaaagggtatctgagtcCttggatcttgaaaatactga	9	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125622237	A	A	125622237	3	1	9	1	0	0	0	0	1	0	0	0	13275	681	24	2	1889	2	RC3H2	9	125622237	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70166	125622237	15591194	10417	18568											
RC3H2	54542	broad.mit.edu	37	chr9	125639825	125639825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccttgctgtcgcaaatctCggcacatgctagtcttgtat	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125639825	A	A	125639825	3	1	9	1	0	0	0	0	1	0	0	0	13275	884	31	3	2455	3	RC3H2	9	125639825	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17588	125639825	15573606	10418	18569											
ZBTB26	57684	broad.mit.edu	37	chr9	125680871	125680871	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcagtcagttcgagttgtGagcatgaagcccctactcaa	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125680871	T	T	125680871	1	4	9	0	1	0	0	0	0	0	0	0	17659	1305	45	3		3	ZBTB26	9	125680871	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	41046	125680871	15532560	10419	18570											
ZBTB26	57684	broad.mit.edu	37	chr9	125680969	125680969	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggacctgtgttgcatcGggttgtggctgacacccttt	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125680969	T	T	125680969	2	4	9	1	0	0	0	0	0	0	0	1	17659	1103	39	1		1	ZBTB26	9	125680969	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	98	125680969	15532462	10420	18571											
RABGAP1	23637	broad.mit.edu	37	chr9	125759582	125759582	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagtcgtatgttattacGgggagctggaatccaaaatc	12	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125759582	T	T	125759582	2	4	9	1	0	0	0	0	0	0	0	1	13072	1103	39	1		1	RABGAP1	9	125759582	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	78613	125759582	15453849	10421	18572											
GPR21	2844	broad.mit.edu	37	chr9	125797536	125797536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcagcgaaaggcaagccCgcttcagcagccagagtggg	13	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125797536	A	A	125797536	3	1	9	1	0	0	0	0	1	0	0	0	6746	652	23	1	693	1	GPR21	9	125797536	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37954	125797536	15415895	10422	18573											
GPR21	2844	broad.mit.edu	37	chr9	125797563	125797563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccagagtggggagactGgggaagtgcaggcctgtcct	18	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125797563	T	T	125797563	3	4	9	1	0	0	0	0	1	0	0	0	6746	1348	47	2	720	2	GPR21	9	125797563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	125797563	15415868	10423	18574											
RABGAP1	23637	broad.mit.edu	37	chr9	125827654	125827654	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggacagtgctatcaccCgggatattaaccgaacattc	8	13	1	0	rs144231846		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125827654	A	A	125827654	2	1	9	1	0	0	0	0	0	0	0	1	13072	643	23	1		1	RABGAP1	9	125827654	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30091	125827654	15385777	10424	18575											
RABGAP1	23637	broad.mit.edu	37	chr9	125827676	125827676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatattaaccgaacattccCagcccatgactactttaagg	7	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125827676	A	A	125827676	3	1	9	1	0	0	0	0	1	0	0	0	13072	594	21	2	1894	2	RABGAP1	9	125827676	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	125827676	15385755	10425	18576											
RABGAP1	23637	broad.mit.edu	37	chr9	125832746	125832746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttaacacatggcctccCtcagcttatactaaccttag	5	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125832746	A	A	125832746	1	1	9	0	1	0	0	0	0	0	0	0	13072	696	24	2		2	RABGAP1	9	125832746	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5070	125832746	15380685	10426	18577											
STRBP	55342	broad.mit.edu	37	chr9	125909236	125909236	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagactggggcatgaacGgggccagactgagataggag	18	6	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125909236	T	T	125909236	2	4	9	1	0	0	0	0	0	0	0	1	15445	1103	39	1		1	STRBP	9	125909236	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76490	125909236	15304195	10427	18578											
STRBP	55342	broad.mit.edu	37	chr9	125936107	125936107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattacaccacacaatgtcCgaccaccttgatccctaaaa	3	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125936107	A	A	125936107	3	1	9	1	0	0	0	0	1	0	0	0	15445	652	23	1	1839	1	STRBP	9	125936107	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26871	125936107	15277324	10428	18579											
STRBP	55342	broad.mit.edu	37	chr9	125941288	125941288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagtccacactcacttGgaatagttttctccggcctc	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125941288	T	T	125941288	2	4	9	1	0	0	0	0	0	0	0	1	15445	1335	47	2		2	STRBP	9	125941288	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5181	125941288	15272143	10429	18580											
CRB2	286204	broad.mit.edu	37	chr9	126132326	126132326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagaggcatgtaagttctGggtcagtactgtgattctgg	13	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126132326	T	T	126132326	1	4	9	0	1	0	0	0	0	0	0	0	3881	1363	47	2		2	CRB2	9	126132326	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	191038	126132326	15081105	10430	18581											
DENND1A	57706	broad.mit.edu	37	chr9	126371754	126371754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcctatgaggtagggcatGggagcactgtgaagagaaac	14	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126371754	T	T	126371754	2	4	9	1	0	0	0	0	0	0	0	1	4466	1335	47	2		2	DENND1A	9	126371754	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	239428	126371754	14841677	10431	18582											
LHX2	9355	broad.mit.edu	37	chr9	126777533	126777533	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaacaagatgctgaccacGggcgaccacttcggcatgaa	11	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126777533	T	T	126777533	2	4	9	1	0	0	0	0	0	0	0	1	8843	1103	39	1		1	LHX2	9	126777533	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	405779	126777533	14435898	10432	18583											
NEK6	10783	broad.mit.edu	37	chr9	127089651	127089651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtgttcatcacagccacGggcgtcgtgaagctcggtga	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127089651	T	T	127089651	2	4	9	1	0	0	0	0	0	0	0	1	10423	1103	39	1		1	NEK6	9	127089651	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	312118	127089651	14123780	10433	18584											
PSMB7	5695	broad.mit.edu	37	chr9	127119290	127119290	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagcagtgcgcaagacctccCgcgagacaggtgttgttttt	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127119290	G	G	127119290	1	3	9	0	1	0	0	0	0	0	0	0	12788	667	23	4		4	PSMB7	9	127119290	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29639	127119290	14094141	10434	18585											
NR6A1	2649	broad.mit.edu	37	chr9	127300465	127300465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgactggggatccaggctgcGagcttgttggggcagaagtg	18	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127300465	T	T	127300465	3	4	9	1	0	0	0	0	1	0	0	0	10732	1058	37	3	732	3	NR6A1	9	127300465	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	181175	127300465	13912966	10435	18586											
NR6A1	2649	broad.mit.edu	37	chr9	127316578	127316578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagttttgaatgaaggatGggccatcagagccatcagca	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127316578	T	T	127316578	1	4	9	0	1	0	0	0	0	0	0	0	10732	1363	47	2		2	NR6A1	9	127316578	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16113	127316578	13896853	10436	18587											
NR6A1	2649	broad.mit.edu	37	chr9	127316863	127316863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaaactgatcatgttcaAgttagaacacagtggaaata	8	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127316863	T	T	127316863	1	4	9	0	1	0	0	0	0	0	0	0	10732	87	3	5		5	NR6A1	9	127316863	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	285	127316863	13896568	10437	18588											
WDR38	401551	broad.mit.edu	37	chr9	127616565	127616565	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtatggctgggagaccCggagtgggcagctgctgtgg	20	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127616565	A	A	127616565	2	1	9	1	0	0	0	0	0	0	0	1	17419	643	23	1		1	WDR38	9	127616565	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	299702	127616565	13596866	10438	18589											
RPL35	11224	broad.mit.edu	37	chr9	127622518	127622518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaataactgtgagaacacGggcaatggatttccggacga	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127622518	T	T	127622518	3	4	9	1	0	0	0	0	1	0	0	0	13695	1116	39	1	213	1	RPL35	9	127622518	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5953	127622518	13590913	10439	18590											
ARPC5L	81873	broad.mit.edu	37	chr9	127636016	127636016	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccttgcggaactctccCgtcaacaccaagaatcaagc	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127636016	A	A	127636016	2	1	9	1	0	0	0	0	0	0	0	1	979	639	23	1		1	ARPC5L	9	127636016	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13498	127636016	13577415	10440	18591											
ARPC5L	81873	broad.mit.edu	37	chr9	127637455	127637455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaacgctgccacgcgcccCagtgagccacctggcttgcc	12	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127637455	A	A	127637455	1	1	9	0	1	0	0	0	0	0	0	0	979	609	21	2		2	ARPC5L	9	127637455	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1439	127637455	13575976	10441	18592											
GOLGA1	2800	broad.mit.edu	37	chr9	127644199	127644199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaggtccaggtttctccCggacttcgaagagctcatta	9	12	3	1	rs138765093		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127644199	A	A	127644199	3	1	9	1	0	0	0	0	1	0	0	0	6615	652	23	1	315	1	GOLGA1	9	127644199	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6744	127644199	13569232	10442	18593											
SCAI	286205	broad.mit.edu	37	chr9	127765771	127765771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcctggtttattcatctGggaagctaaattcattggct	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127765771	T	T	127765771	3	4	9	1	0	0	0	0	1	0	0	0	13981	1357	47	2	916	2	SCAI	9	127765771	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121572	127765771	13447660	10443	18594											
HSPA5	3309	broad.mit.edu	37	chr9	127999307	127999307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttgtcttcagctgtcactCgaagaataccattcacatct	5	13	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127999307	A	A	127999307	3	1	9	1	0	0	0	0	1	0	0	0	7483	884	31	3	439	3	HSPA5	9	127999307	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	233536	127999307	13214124	10444	18595											
HSPA5	3309	broad.mit.edu	37	chr9	128000947	128000947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatctgggtttatgccacGggatggttccttgccattga	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128000947	T	T	128000947	3	4	9	1	0	0	0	0	1	0	0	0	7483	1116	39	1	820	1	HSPA5	9	128000947	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1640	128000947	13212484	10445	18596											
GAPVD1	26130	broad.mit.edu	37	chr9	128094306	128094306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcagggaggtcagttccCgccccagcacaccaggcctc	11	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128094306	A	A	128094306	3	1	9	1	0	0	0	0	1	0	0	0	6301	652	23	1	2317	1	GAPVD1	9	128094306	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93359	128094306	13119125	10446	18597											
GAPVD1	26130	broad.mit.edu	37	chr9	128111642	128111642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaatgaacctgggtatcCgtttcttgggggtgggtttt	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128111642	A	A	128111642	1	1	9	0	1	0	0	0	0	0	0	0	6301	667	23	1		1	GAPVD1	9	128111642	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	17336	128111642	13101789	10447	18598											
GAPVD1	26130	broad.mit.edu	37	chr9	128111774	128111774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagccaagcagcccaccCgcaggattcagctttctctt	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128111774	A	A	128111774	3	1	9	1	0	0	0	0	1	0	0	0	6301	652	23	1	3430	1	GAPVD1	9	128111774	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132	128111774	13101657	10448	18599											
MAPKAP1	79109	broad.mit.edu	37	chr9	128347849	128347849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacttgagcttcggctccCgtccttcgcttgtatactgc	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128347849	A	A	128347849	3	1	9	1	0	0	0	0	1	0	0	0	9380	652	23	1	962	1	MAPKAP1	9	128347849	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	236075	128347849	12865582	10449	18600											
MAPKAP1	79109	broad.mit.edu	37	chr9	128347883	128347883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactgccagcagatgagccCgatcaggtcctgcaccctgg	11	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128347883	A	A	128347883	3	1	9	1	0	0	0	0	1	0	0	0	9380	652	23	1	996	1	MAPKAP1	9	128347883	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	128347883	12865548	10450	18601											
PBX3	5090	broad.mit.edu	37	chr9	128691996	128691996	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagagtagaacacgtccCatttctccaaaagagattga	8	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128691996	A	A	128691996	2	1	9	1	0	0	0	0	0	0	0	1	11588	581	21	2		2	PBX3	9	128691996	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	344113	128691996	12521435	10451	18602											
FAM125B	89853	broad.mit.edu	37	chr9	129102865	129102865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatcccatcacgggagtcGgggtggtggcttctcggaac	16	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129102865	T	T	129102865	3	4	9	1	0	0	0	0	1	0	0	0	5474	1116	39	1	166	1	FAM125B	9	129102865	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	410869	129102865	12110566	10452	18603											
FAM125B	89853	broad.mit.edu	37	chr9	129154426	129154426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcgatttgtgacattcGgatcatgggccggaccaagc	13	10	1	1	rs9696000		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129154426	T	T	129154426	3	4	9	1	0	0	0	0	1	0	0	0	5474	1116	39	1	509	1	FAM125B	9	129154426	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51561	129154426	12059005	10453	18604											
FAM125B	89853	broad.mit.edu	37	chr9	129154453	129154453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccggaccaagcaggcccCgcctcagtacacgtttattg	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129154453	A	A	129154453	3	1	9	1	0	0	0	0	1	0	0	0	5474	652	23	1	536	1	FAM125B	9	129154453	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	129154453	12058978	10454	18605											
LMX1B	4010	broad.mit.edu	37	chr9	129455829	129455829	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacactggcagctgagacGggcctcagtgtgcgcgtggt	17	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129455829	T	T	129455829	2	4	9	1	0	0	0	0	0	0	0	1	8936	1103	39	1		1	LMX1B	9	129455829	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	301376	129455829	11757602	10455	18606											
ZBTB43	23099	broad.mit.edu	37	chr9	129596036	129596036	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgaagcaccatctcgtGggccacatgaaaattcacac	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129596036	T	T	129596036	2	4	9	1	0	0	0	0	0	0	0	1	17670	1335	47	2		2	ZBTB43	9	129596036	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	140207	129596036	11617395	10456	18607											
ANGPTL2	23452	broad.mit.edu	37	chr9	129851307	129851307	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactcagcccagtagactcCgtcctggtagcggctccggt	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129851307	A	A	129851307	4	1	9	1	0	0	0	0	0	1	0	0	614	661	23	1	92	1	ANGPTL2	9	129851307	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	255271	129851307	11362124	10457	18608											
RALGPS1	9649	broad.mit.edu	37	chr9	129853824	129853824	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggtggtaacagggtcagGcagcttggcccagctgcttc	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129853824	A	A	129853824	1	1	9	0	1	0	0	0	0	0	0	0	13125	1218	42	4		4	RALGPS1	9	129853824	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2517	129853824	11359607	10458	18609											
ANGPTL2	23452	broad.mit.edu	37	chr9	129854124	129854124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcggccggaccagtcctcCatggtcaccaggagtttgta	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129854124	A	A	129854124	3	1	9	1	0	0	0	0	1	0	0	0	614	594	21	2	382	2	ANGPTL2	9	129854124	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	300	129854124	11359307	10459	18610											
RALGPS1	9649	broad.mit.edu	37	chr9	129854232	129854232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccttgctggggaaaaccCaggagagtgttaatgtggag	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129854232	A	A	129854232	1	1	9	0	1	0	0	0	0	0	0	0	13125	609	21	2		2	RALGPS1	9	129854232	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	108	129854232	11359199	10460	18611											
RALGPS1	9649	broad.mit.edu	37	chr9	129931001	129931001	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagaagtacctgaagtcCgtacgctacattgaagagct	11	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129931001	A	A	129931001	2	1	9	1	0	0	0	0	0	0	0	1	13125	639	23	1		1	RALGPS1	9	129931001	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76769	129931001	11282430	10461	18612											
GARNL3	84253	broad.mit.edu	37	chr9	130094574	130094574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtgaatttcaagtttGgggttctttttgccaaagat	10	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130094574	T	T	130094574	3	4	9	1	0	0	0	0	1	0	0	0	6303	1348	47	2	646	2	GARNL3	9	130094574	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	163573	130094574	11118857	10462	18613											
GARNL3	84253	broad.mit.edu	37	chr9	130106485	130106485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacttaacaactgtttgtGgaattcataacttgtttttc	7	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130106485	T	T	130106485	1	4	9	0	1	0	0	0	0	0	0	0	6303	1363	47	2		2	GARNL3	9	130106485	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11911	130106485	11106946	10463	18614											
GARNL3	84253	broad.mit.edu	37	chr9	130106589	130106589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcggaagaaagaggaggccCgccaggcggagtttgttaga	17	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130106589	A	A	130106589	3	1	9	1	0	0	0	0	1	0	0	0	6303	652	23	1	1385	1	GARNL3	9	130106589	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	130106589	11106842	10464	18615											
GARNL3	84253	broad.mit.edu	37	chr9	130117521	130117521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaaattgtcaaggtctGggggcttccacacccgcatg	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130117521	T	T	130117521	1	4	9	0	1	0	0	0	0	0	0	0	6303	1363	47	2		2	GARNL3	9	130117521	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10932	130117521	11095910	10465	18616											
GARNL3	84253	broad.mit.edu	37	chr9	130127565	130127565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcccactaccgttgccCgttatcattgcaggttaatt	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130127565	A	A	130127565	1	1	9	0	1	0	0	0	0	0	0	0	6303	667	23	1		1	GARNL3	9	130127565	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10044	130127565	11085866	10466	18617											
GARNL3	84253	broad.mit.edu	37	chr9	130127616	130127616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattgatgtgtacgaagatgGagaagctggtttgctgttgt	14	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130127616	T	T	130127616	3	4	9	1	0	0	0	0	1	0	0	0	6303	1174	41	3	2218	3	GARNL3	9	130127616	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	130127616	11085815	10467	18618											
GARNL3	84253	broad.mit.edu	37	chr9	130152942	130152942	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcggatgaaggtggaccCaagtcagaaggagcgccaaa	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130152942	A	A	130152942	2	1	9	1	0	0	0	0	0	0	0	1	6303	581	21	2		2	GARNL3	9	130152942	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25326	130152942	11060489	10468	18619											
SLC2A8	29988	broad.mit.edu	37	chr9	130168359	130168359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgtggcccctgtcccGgggcttcccagccaacagag	13	15	0	1	rs78283490	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130168359	T	T	130168359	1	4	9	0	1	0	0	0	0	0	0	0	14665	1131	39	1		1	SLC2A8	9	130168359	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15417	130168359	11045072	10469	18620											
RPL12	6136	broad.mit.edu	37	chr9	130210690	130210690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatcaaaagtgatattcCcactgtgtttaactgcagaa	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130210690	A	A	130210690	3	1	9	1	0	0	0	0	1	0	0	0	13669	623	22	2	204	2	RPL12	9	130210690	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42331	130210690	11002741	10470	18621											
LRSAM1	90678	broad.mit.edu	37	chr9	130217306	130217306	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggggcagatgacattctCgacatctctaaatgtgagct	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130217306	A	A	130217306	2	1	9	1	0	0	0	0	0	0	0	1	9130	871	31	3		3	LRSAM1	9	130217306	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6616	130217306	10996125	10471	18622											
LRSAM1	90678	broad.mit.edu	37	chr9	130217375	130217375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgaattggatctgtccCgttttcttggatcttgtgtc	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130217375	A	A	130217375	1	1	9	0	1	0	0	0	0	0	0	0	9130	667	23	1		1	LRSAM1	9	130217375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	69	130217375	10996056	10472	18623											
FAM129B	64855	broad.mit.edu	37	chr9	130279120	130279120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagggcccgtcgagcacGggggtggctgcctacctcgg	18	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130279120	T	T	130279120	1	4	9	0	1	0	0	0	0	0	0	0	5483	1131	39	1		1	FAM129B	9	130279120	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	61745	130279120	10934311	10473	18624											
FAM129B	64855	broad.mit.edu	37	chr9	130279193	130279193	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttggtccatgtcagttcGgatgacggcctgcatggccg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130279193	T	T	130279193	2	4	9	1	0	0	0	0	0	0	0	1	5483	1124	39	1		1	FAM129B	9	130279193	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	73	130279193	10934238	10474	18625											
STXBP1	6812	broad.mit.edu	37	chr9	130423419	130423419	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgaactggtaaaatccCgagcagccaaagtcatcaaa	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130423419	A	A	130423419	2	1	9	1	0	0	0	0	0	0	0	1	15470	644	23	1		1	STXBP1	9	130423419	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	144226	130423419	10790012	10475	18626											
STXBP1	6812	broad.mit.edu	37	chr9	130453075	130453075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacacacatcctcacccCacagaaactgctggacacac	4	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130453075	A	A	130453075	3	1	9	1	0	0	0	0	1	0	0	0	15470	594	21	2	1912	2	STXBP1	9	130453075	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29656	130453075	10760356	10476	18627											
C9orf117	286207	broad.mit.edu	37	chr9	130469470	130469470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggaggaccggctagccCggtgcgtgggctggcgggca	19	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130469470	A	A	130469470	2	1	9	1	0	0	0	0	0	0	0	1	2477	666	23	1		1	C9orf117	9	130469470	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16395	130469470	10743961	10477	18628											
SH2D3C	10044	broad.mit.edu	37	chr9	130507029	130507029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggactgtgaaggtcttgccCcagtccccttcaggggcccc	13	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130507029	A	A	130507029	3	1	9	1	0	0	0	0	1	0	0	0	14347	624	22	2	992	2	SH2D3C	9	130507029	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37559	130507029	10706402	10478	18629											
SH2D3C	10044	broad.mit.edu	37	chr9	130511512	130511512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggcagccatcgctgcGggtgaccttgtcagcagtga	17	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130511512	T	T	130511512	3	4	9	1	0	0	0	0	1	0	0	0	14347	1116	39	1	1497	1	SH2D3C	9	130511512	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4483	130511512	10701919	10479	18630											
SH2D3C	10044	broad.mit.edu	37	chr9	130513489	130513489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtaccaggcatggctgcGgagatccgtgctgctgagtt	15	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130513489	T	T	130513489	3	4	9	1	0	0	0	0	1	0	0	0	14347	1116	39	1	1972	1	SH2D3C	9	130513489	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1977	130513489	10699942	10480	18631											
CDK9	1025	broad.mit.edu	37	chr9	130549103	130549103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccggccggctaactgccCgggaccccgggtcggttttc	16	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130549103	A	A	130549103	1	1	9	0	1	0	0	0	0	0	0	0	3181	667	23	1		1	CDK9	9	130549103	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35614	130549103	10664328	10481	18632											
CDK9	1025	broad.mit.edu	37	chr9	130549816	130549816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccccattacagccttgcGggagatcaagatccttcagc	9	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130549816	T	T	130549816	3	4	9	1	0	0	0	0	1	0	0	0	3181	1116	39	1	204	1	CDK9	9	130549816	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	713	130549816	10663615	10482	18633											
ENG	2022	broad.mit.edu	37	chr9	130579387	130579387	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgtgccctactgtgacctCagccactagaacaaacccga	8	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130579387	T	T	130579387	1	4	9	0	1	0	0	0	0	0	0	0	5159	841	29	4		4	ENG	9	130579387	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29571	130579387	10634044	10483	18634											
FAM102A	399665	broad.mit.edu	37	chr9	130742443	130742443	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccctgagtctgaagcccCgaaggcgaaaaaaggtggag	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130742443	A	A	130742443	1	1	9	0	1	0	0	0	0	0	0	0	5428	667	23	1		1	FAM102A	9	130742443	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	163056	130742443	10470988	10484	18635											
NAIF1	203245	broad.mit.edu	37	chr9	130825764	130825764	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcccagggtcagaggcGggggccgggttagctgtgtt	18	10	1	1	rs115824869	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130825764	T	T	130825764	2	4	9	1	0	0	0	0	0	0	0	1	10240	1103	39	1		1	NAIF1	9	130825764	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83321	130825764	10387667	10485	18636											
SLC25A25	114789	broad.mit.edu	37	chr9	130860894	130860894	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatcggggaagcccagaccGagttccagtactttgagtcg	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130860894	T	T	130860894	4	4	9	1	0	0	0	0	0	1	0	0	14602	1059	37	3	539	3	SLC25A25	9	130860894	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35130	130860894	10352537	10486	18637											
CIZ1	25792	broad.mit.edu	37	chr9	130931415	130931415	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcaccctcgaagcaaccCacagcgtccactgtaatgaa	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130931415	A	A	130931415	2	1	9	1	0	0	0	0	0	0	0	1	3472	581	21	2		2	CIZ1	9	130931415	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70521	130931415	10282016	10487	18638											
DNM1	1759	broad.mit.edu	37	chr9	130980509	130980509	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacctccaactcattgcaGggacttcttgcctcgaggat	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130980509	T	T	130980509	5	4	9	1	0	0	0	0	0	0	1	0	4710	1014	35	2	167	2	DNM1	9	130980509	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	49094	130980509	10232922	10488	18639											
DNM1	1759	broad.mit.edu	37	chr9	131010192	131010192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtggcaatgttggtgtgtGggcctcccaggacaaagaga	16	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131010192	T	T	131010192	1	4	9	0	1	0	0	0	0	0	0	0	4710	1363	47	2		2	DNM1	9	131010192	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29683	131010192	10203239	10489	18640											
GOLGA2	2801	broad.mit.edu	37	chr9	131022827	131022827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcggctgatggtagtgcGgtcgttctgcatggtctcca	15	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131022827	T	T	131022827	3	4	9	1	0	0	0	0	1	0	0	0	6616	1116	39	1	1454	1	GOLGA2	9	131022827	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12635	131022827	10190604	10490	18641											
GOLGA2	2801	broad.mit.edu	37	chr9	131028581	131028581	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacttcttccaactgatcCgtaatttcttggttctgttg	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131028581	A	A	131028581	2	1	9	1	0	0	0	0	0	0	0	1	6616	639	23	1		1	GOLGA2	9	131028581	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5754	131028581	10184850	10491	18642											
GOLGA2	2801	broad.mit.edu	37	chr9	131030417	131030417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttcatccatgagattaGggacattgtcagcatcatga	10	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131030417	T	T	131030417	3	4	9	1	0	0	0	0	1	0	0	0	6616	1000	35	2	2765	2	GOLGA2	9	131030417	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1836	131030417	10183014	10492	18643											
C9orf119	375757	broad.mit.edu	37	chr9	131039032	131039032	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgcggggccttccgatccCctgtgagtatttcttccccc	10	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131039032	G	G	131039032	3	3	9	1	0	0	0	0	1	0	0	0	2478	623	22	4	430	4	C9orf119	9	131039032	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8615	131039032	10174399	10493	18644											
SLC27A4	10999	broad.mit.edu	37	chr9	131122718	131122718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagggccgctacgtccCgctggaccaagaggcctaca	12	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131122718	A	A	131122718	3	1	9	1	0	0	0	0	1	0	0	0	14642	652	23	1	1926	1	SLC27A4	9	131122718	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83686	131122718	10090713	10494	18645											
CERCAM	51148	broad.mit.edu	37	chr9	131186792	131186792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttccttgcatccctgcGggctgaaggggcagaccagc	12	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131186792	T	T	131186792	3	4	9	1	0	0	0	0	1	0	0	0	3296	1116	39	1	683	1	CERCAM	9	131186792	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64074	131186792	10026639	10495	18646											
CERCAM	51148	broad.mit.edu	37	chr9	131193497	131193497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcggcgtagacctgctccCgggctaccaggacccttact	10	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131193497	A	A	131193497	3	1	9	1	0	0	0	0	1	0	0	0	3296	652	23	1	1152	1	CERCAM	9	131193497	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6705	131193497	10019934	10496	18647											
ODF2	4957	broad.mit.edu	37	chr9	131262469	131262469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatacgccaacgtgtttGgggatggtccctattccacc	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131262469	T	T	131262469	3	4	9	1	0	0	0	0	1	0	0	0	10922	1348	47	2	2621	2	ODF2	9	131262469	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68972	131262469	9950962	10497	18648											
GLE1	2733	broad.mit.edu	37	chr9	131296170	131296170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctacataagaagtgtcCttactctgttcctttctatc	4	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131296170	A	A	131296170	3	1	9	1	0	0	0	0	1	0	0	0	6499	681	24	2	1628	2	GLE1	9	131296170	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33701	131296170	9917261	10498	18649											
SPTAN1	6709	broad.mit.edu	37	chr9	131336975	131336975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtttgatggagctgcacCgccagtgggaattacttttg	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131336975	A	A	131336975	3	1	9	1	0	0	0	0	1	0	0	0	15235	652	23	1	395	1	SPTAN1	9	131336975	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40805	131336975	9876456	10499	18650											
SPTAN1	6709	broad.mit.edu	37	chr9	131339363	131339363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggggtgttcctagttctaGggagtcatcattgctgtgga	14	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131339363	T	T	131339363	1	4	9	0	1	0	0	0	0	0	0	0	15235	1015	35	2		2	SPTAN1	9	131339363	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2388	131339363	9874068	10500	18651											
SPTAN1	6709	broad.mit.edu	37	chr9	131351102	131351102	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagcaacaagtggccccCacggatgatgagactgggaa	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131351102	A	A	131351102	2	1	9	1	0	0	0	0	0	0	0	1	15235	581	21	2		2	SPTAN1	9	131351102	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11739	131351102	9862329	10501	18652											
SPTAN1	6709	broad.mit.edu	37	chr9	131356574	131356574	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatcaatgagaaggaagcCgctctgacaagtgaggaggt	15	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131356574	A	A	131356574	2	1	9	1	0	0	0	0	0	0	0	1	15235	639	23	1		1	SPTAN1	9	131356574	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5472	131356574	9856857	10502	18653											
SPTAN1	6709	broad.mit.edu	37	chr9	131362387	131362387	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattccaagacagcctcccCgtggaaggtaagaactcctt	9	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131362387	A	A	131362387	3	1	9	1	0	0	0	0	1	0	0	0	15235	652	23	1	3674	1	SPTAN1	9	131362387	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5813	131362387	9851044	10503	18654											
SPTAN1	6709	broad.mit.edu	37	chr9	131370474	131370474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggaggccttcttgaatacCgaagacaaaggagactcact	11	10	2	3	rs2228951	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131370474	A	A	131370474	2	1	9	1	0	0	0	0	0	0	0	1	15235	639	23	1		1	SPTAN1	9	131370474	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8087	131370474	9842957	10504	18655											
SPTAN1	6709	broad.mit.edu	37	chr9	131374143	131374143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtatggcccaccagctccCggtgcccagggaggaagatg	15	12	0	1	rs140922514	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131374143	A	A	131374143	1	1	9	0	1	0	0	0	0	0	0	0	15235	667	23	1		1	SPTAN1	9	131374143	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3669	131374143	9839288	10505	18656											
SPTAN1	6709	broad.mit.edu	37	chr9	131388216	131388216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggccaactcagccgccCgcaagaagaagcttctggag	11	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131388216	A	A	131388216	3	1	9	1	0	0	0	0	1	0	0	0	15235	652	23	1	6424	1	SPTAN1	9	131388216	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14073	131388216	9825215	10506	18657											
SPTAN1	6709	broad.mit.edu	37	chr9	131388756	131388756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggacttaacagacccCgtgcgctgcaactccttgga	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131388756	A	A	131388756	2	1	9	1	0	0	0	0	0	0	0	1	15235	639	23	1		1	SPTAN1	9	131388756	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	540	131388756	9824675	10507	18658											
SPTAN1	6709	broad.mit.edu	37	chr9	131390159	131390159	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgattgctgctgttgtcCggacaccaccttgtctcccg	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131390159	A	A	131390159	1	1	9	0	1	0	0	0	0	0	0	0	15235	667	23	1		1	SPTAN1	9	131390159	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1403	131390159	9823272	10508	18659											
WDR34	89891	broad.mit.edu	37	chr9	131403138	131403138	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacaggcacgggggcctcCgtctgcacctgggcgtccac	14	16	1	1	rs137886760		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131403138	T	T	131403138	2	4	9	1	0	0	0	0	0	0	0	1	17415	639	23	4		4	WDR34	9	131403138	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12979	131403138	9810293	10509	18660											
ZER1	10444	broad.mit.edu	37	chr9	131502140	131502140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgagcagaccttaatGgtatgagcatcctgcccagc	10	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131502140	T	T	131502140	1	4	9	0	1	0	0	0	0	0	0	0	17751	1363	47	2		2	ZER1	9	131502140	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	99002	131502140	9711291	10510	18661											
ZER1	10444	broad.mit.edu	37	chr9	131517620	131517620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccacatagtgcacacacGgtcccaatctctctatacac	4	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131517620	T	T	131517620	1	4	9	0	1	0	0	0	0	0	0	0	17751	1131	39	1		1	ZER1	9	131517620	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15480	131517620	9695811	10511	18662											
CCBL1	883	broad.mit.edu	37	chr9	131598328	131598328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgccgatggtcagggtcCgttcccacatgccagggagg	15	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131598328	A	A	131598328	3	1	9	1	0	0	0	0	1	0	0	0	2758	652	23	1	579	1	CCBL1	9	131598328	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80708	131598328	9615103	10512	18663											
DOLK	22845	broad.mit.edu	37	chr9	131708574	131708574	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaggtggaaatactttcGggcgatggtgggggcctggt	18	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131708574	T	T	131708574	2	4	9	1	0	0	0	0	0	0	0	1	4743	1124	39	1		1	DOLK	9	131708574	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	110246	131708574	9504857	10513	18664											
NUP188	23511	broad.mit.edu	37	chr9	131750389	131750389	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgaaactggcattctcCgtcaccaacaatgttattcg	7	11	2	1	rs142643186		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131750389	A	A	131750389	2	1	9	1	0	0	0	0	0	0	0	1	10853	639	23	1		1	NUP188	9	131750389	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41815	131750389	9463042	10514	18665											
NUP188	23511	broad.mit.edu	37	chr9	131752318	131752318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttcacatacacactgtGggtcttttttgaacagtcag	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131752318	T	T	131752318	1	4	9	0	1	0	0	0	0	0	0	0	10853	1363	47	2		2	NUP188	9	131752318	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1929	131752318	9461113	10515	18666											
NUP188	23511	broad.mit.edu	37	chr9	131764229	131764229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccttctgagtgtgtacCagctgagcaccaacggcaca	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131764229	A	A	131764229	3	1	9	1	0	0	0	0	1	0	0	0	10853	595	21	2	4253	2	NUP188	9	131764229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11911	131764229	9449202	10516	18667											
FAM73B	84895	broad.mit.edu	37	chr9	131832149	131832149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgatggcttcatctccCatttctactccgtatcggag	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131832149	A	A	131832149	3	1	9	1	0	0	0	0	1	0	0	0	5669	594	21	2	1534	2	FAM73B	9	131832149	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67920	131832149	9381282	10517	18668											
DOLPP1	57171	broad.mit.edu	37	chr9	131846850	131846850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattctccaggccctgccGggacctcctttctggatcag	9	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131846850	T	T	131846850	1	4	9	0	1	0	0	0	0	0	0	0	4744	1131	39	1		1	DOLPP1	9	131846850	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14701	131846850	9366581	10518	18669											
DOLPP1	57171	broad.mit.edu	37	chr9	131847034	131847034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctcatcatatttaagcGggagctgcacacggtgagtc	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131847034	T	T	131847034	3	4	9	1	0	0	0	0	1	0	0	0	4744	1116	39	1	170	1	DOLPP1	9	131847034	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	184	131847034	9366397	10519	18670											
DOLPP1	57171	broad.mit.edu	37	chr9	131847515	131847515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagtgggcaccaagtacGggatgccctccagccattcc	11	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131847515	T	T	131847515	3	4	9	1	0	0	0	0	1	0	0	0	4744	1116	39	1	306	1	DOLPP1	9	131847515	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	481	131847515	9365916	10520	18671											
DOLPP1	57171	broad.mit.edu	37	chr9	131849064	131849064	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgagtacacggtaaccCgggcagaagccaggtgagtt	15	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131849064	A	A	131849064	2	1	9	1	0	0	0	0	0	0	0	1	4744	643	23	1		1	DOLPP1	9	131849064	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1549	131849064	9364367	10521	18672											
METTL11A	28989	broad.mit.edu	37	chr9	132395143	132395143	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctgcagaggtttttgaGggtaggcaggtctggcgtgc	17	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132395143	T	T	132395143	3	4	9	1	0	0	0	0	1	0	0	0	9588	1014	35	2	163	2	METTL11A	9	132395143	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	546079	132395143	8818288	10522	18673											
ASB6	140459	broad.mit.edu	37	chr9	132397750	132397750	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccctgagatgagccgggGctggcaggagaaactgagga	17	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132397750	A	A	132397750	1	1	9	0	1	0	0	0	0	0	0	0	1031	1218	42	4		4	ASB6	9	132397750	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	2607	132397750	8815681	10523	18674											
TOR1B	27348	broad.mit.edu	37	chr9	132569538	132569538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttcatatttgacgagatGgataaattgcaccccgggat	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132569538	T	T	132569538	3	4	9	1	0	0	0	0	1	0	0	0	16498	1348	47	2	547	2	TOR1B	9	132569538	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	171788	132569538	8643893	10524	18675											
TOR1B	27348	broad.mit.edu	37	chr9	132569593	132569593	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agccgtttctagactactacGagcaggttgacggagtgtct	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132569593	T	T	132569593	4	4	9	1	0	0	0	0	0	1	0	0	16498	1059	37	3	602	3	TOR1B	9	132569593	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55	132569593	8643838	10525	18676											
TOR1B	27348	broad.mit.edu	37	chr9	132569605	132569605	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actactacgagcaggttgacGgagtgtcttaccgcaaagcc	11	11	1	1	rs142732671		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132569605	T	T	132569605	4	4	9	1	0	0	0	0	0	1	0	0	16498	1117	39	1	614	1	TOR1B	9	132569605	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	132569605	8643826	10526	18677											
TOR1B	27348	broad.mit.edu	37	chr9	132571194	132571194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaactcagcaatgcaggcGgggaccttataactaagacg	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132571194	T	T	132571194	3	4	9	1	0	0	0	0	1	0	0	0	16498	1116	39	1	666	1	TOR1B	9	132571194	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1589	132571194	8642237	10527	18678											
C9orf78	51759	broad.mit.edu	37	chr9	132591777	132591777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctctgccagcagacGggccttggcatcctccgtgg	13	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132591777	T	T	132591777	3	4	9	1	0	0	0	0	1	0	0	0	2522	1116	39	1	295	1	C9orf78	9	132591777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20583	132591777	8621654	10528	18679											
FNBP1	23048	broad.mit.edu	37	chr9	132658195	132658195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcatttctccgaatgcGggtccagccatcgcctttgt	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132658195	T	T	132658195	3	4	9	1	0	0	0	0	1	0	0	0	6023	1116	39	1	93	1	FNBP1	9	132658195	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66418	132658195	8555236	10529	18680											
FNBP1	23048	broad.mit.edu	37	chr9	132757142	132757142	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagttgctttgcatagctGagttcaatctctgtcctttc	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132757142	T	T	132757142	2	4	9	1	0	0	0	0	0	0	0	1	6023	1277	45	3		3	FNBP1	9	132757142	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	98947	132757142	8456289	10530	18681											
GPR107	57720	broad.mit.edu	37	chr9	132890960	132890960	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcttctttgttctaacGgggtataaattccgtccggc	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132890960	T	T	132890960	2	4	9	1	0	0	0	0	0	0	0	1	6688	1103	39	1		1	GPR107	9	132890960	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	133818	132890960	8322471	10531	18682											
NCS1	23413	broad.mit.edu	37	chr9	132980191	132980191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctacaagcaattcttccCgttcggagaccccaccaagt	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132980191	A	A	132980191	3	1	9	1	0	0	0	0	1	0	0	0	10335	652	23	1	194	1	NCS1	9	132980191	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89231	132980191	8233240	10532	18683											
ASS1	445	broad.mit.edu	37	chr9	133333869	133333869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgcactgtatgaggacCgctacctcctgggcacctct	10	16	1	1	rs121908644		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133333869	A	A	133333869	3	1	9	1	0	0	0	0	1	0	0	0	1065	652	23	1	266	1	ASS1	9	133333869	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	353678	133333869	7879562	10533	18684											
ASS1	445	broad.mit.edu	37	chr9	133364662	133364662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcatttgctgacagtttGggtttcatgcgtttctctct	9	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133364662	T	T	133364662	1	4	9	0	1	0	0	0	0	0	0	0	1065	1363	47	2		2	ASS1	9	133364662	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30793	133364662	7848769	10534	18685											
FUBP3	8939	broad.mit.edu	37	chr9	133470945	133470945	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctcagtatatggatacGgagtacaaaaacggcccttg	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133470945	T	T	133470945	4	4	9	1	0	0	0	0	0	1	0	0	6153	1117	39	1	166	1	FUBP3	9	133470945	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106283	133470945	7742486	10535	18686											
FUBP3	8939	broad.mit.edu	37	chr9	133491916	133491916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttgcaggtgtgtgagccCggagcacggagcacagcggc	17	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133491916	A	A	133491916	1	1	9	0	1	0	0	0	0	0	0	0	6153	667	23	1		1	FUBP3	9	133491916	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20971	133491916	7721515	10536	18687											
EXOSC2	23404	broad.mit.edu	37	chr9	133574662	133574662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtgaaagagaagtgatGgagacctttctgaggatctg	15	4	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133574662	T	T	133574662	1	4	9	0	1	0	0	0	0	0	0	0	5357	1363	47	2		2	EXOSC2	9	133574662	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	82746	133574662	7638769	10537	18688											
ABL1	25	broad.mit.edu	37	chr9	133750284	133750284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgaaactgcctggtagGggagaaccacttggtgaagg	15	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133750284	T	T	133750284	3	4	9	1	0	0	0	0	1	0	0	0	92	1232	43	2	1281	2	ABL1	9	133750284	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	175622	133750284	7463147	10538	18689											
LAMC3	10319	broad.mit.edu	37	chr9	133944435	133944435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctccatcaagggctgccGgggtaaggaggctgggtcct	15	11	2	0	rs151159947		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133944435	T	T	133944435	3	4	9	1	0	0	0	0	1	0	0	0	8688	1116	39	1	2950	1	LAMC3	9	133944435	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	194151	133944435	7268996	10539	18690											
NUP214	8021	broad.mit.edu	37	chr9	134002982	134002982	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaattgcccaaggaacgctcGagtctgcttgctgtgtccaa	11	11	1	0	rs147225633		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134002982	T	T	134002982	2	4	9	1	0	0	0	0	0	0	0	1	10857	1045	37	3		3	NUP214	9	134002982	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	58547	134002982	7210449	10540	18691											
NUP214	8021	broad.mit.edu	37	chr9	134021654	134021654	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcagcaccacctagttcCgtgccattgaagtcctcagt	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134021654	A	A	134021654	2	1	9	1	0	0	0	0	0	0	0	1	10857	639	23	1		1	NUP214	9	134021654	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18672	134021654	7191777	10541	18692											
NUP214	8021	broad.mit.edu	37	chr9	134034809	134034809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgtgaaatttgctgtcCaagatgtgaatgatgttcta	10	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134034809	A	A	134034809	3	1	9	1	0	0	0	0	1	0	0	0	10857	595	21	2	2546	2	NUP214	9	134034809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13155	134034809	7178622	10542	18693											
NUP214	8021	broad.mit.edu	37	chr9	134038431	134038431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacaccctagccaacaatcGggaaatcatcaaccaacaga	5	13	2	1	rs138239623	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134038431	T	T	134038431	3	4	9	1	0	0	0	0	1	0	0	0	10857	1116	39	1	2668	1	NUP214	9	134038431	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3622	134038431	7175000	10543	18694											
NUP214	8021	broad.mit.edu	37	chr9	134039198	134039198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagaggatagtgtaccccCgacagcctccgatctttcag	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134039198	A	A	134039198	1	1	9	0	1	0	0	0	0	0	0	0	10857	667	23	1		1	NUP214	9	134039198	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	767	134039198	7174233	10544	18695											
NUP214	8021	broad.mit.edu	37	chr9	134039332	134039332	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcacaccaaatccttgccCaaagtaccaggtaattgcat	5	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134039332	A	A	134039332	2	1	9	1	0	0	0	0	0	0	0	1	10857	581	21	2		2	NUP214	9	134039332	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	134039332	7174099	10545	18696											
FAM78A	286336	broad.mit.edu	37	chr9	134136548	134136548	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacgttgctctcgctgacGggcacggcccatgtgacgct	13	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134136548	T	T	134136548	2	4	9	1	0	0	0	0	0	0	0	1	5679	1103	39	1		1	FAM78A	9	134136548	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	97216	134136548	7076883	10546	18697											
PPAPDC3	84814	broad.mit.edu	37	chr9	134165712	134165712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgtcctgggccagtgccCgctccatggtcaagctcatc	12	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165712	A	A	134165712	3	1	9	1	0	0	0	0	1	0	0	0	12392	652	23	1	330	1	PPAPDC3	9	134165712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29164	134165712	7047719	10547	18698											
BAT2L1	84726	broad.mit.edu	37	chr9	134360143	134360143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggccatcggtctctcccCaatgtccttccccaccgccg	9	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134360143	A	A	134360143	3	1	9	1	0	0	0	0	1	0	0	0	1325	594	21	2	5621	2	BAT2L1	9	134360143	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	194431	134360143	6853288	10548	18699											
POMT1	10585	broad.mit.edu	37	chr9	134381575	134381575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttggatgacagtgggcCgccatttggccacatggtgc	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134381575	A	A	134381575	3	1	9	1	0	0	0	0	1	0	0	0	12340	652	23	1	203	1	POMT1	9	134381575	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21432	134381575	6831856	10549	18700											
POMT1	10585	broad.mit.edu	37	chr9	134393866	134393866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatctgacacagacgtctGgaagaccatcctctcagagg	11	11	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134393866	T	T	134393866	3	4	9	1	0	0	0	0	1	0	0	0	12340	1357	47	2	1423	2	POMT1	9	134393866	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12291	134393866	6819565	10550	18701											
POMT1	10585	broad.mit.edu	37	chr9	134393889	134393889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccatcctctcagaggtcCgctttgtgcacgtgaacact	9	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134393889	A	A	134393889	3	1	9	1	0	0	0	0	1	0	0	0	12340	652	23	1	1446	1	POMT1	9	134393889	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	134393889	6819542	10551	18702											
RAPGEF1	2889	broad.mit.edu	37	chr9	134504586	134504586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagttgactgtgacatccCagtcgtcttgtttaggatct	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134504586	A	A	134504586	3	1	9	1	0	0	0	0	1	0	0	0	13151	594	21	2	2560	2	RAPGEF1	9	134504586	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110697	134504586	6708845	10552	18703											
RAPGEF1	2889	broad.mit.edu	37	chr9	134514005	134514005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctgactgggactgtctGgaacctgcaccggtaccttc	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134514005	T	T	134514005	1	4	9	0	1	0	0	0	0	0	0	0	13151	1363	47	2		2	RAPGEF1	9	134514005	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9419	134514005	6699426	10553	18704											
MED27	9442	broad.mit.edu	37	chr9	134952771	134952771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgctttctgcatgtatGgaatataagaaaacttggtt	8	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134952771	T	T	134952771	1	4	9	0	1	0	0	0	0	0	0	0	9538	1363	47	2		2	MED27	9	134952771	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	438766	134952771	6260660	10554	18705											
SETX	23064	broad.mit.edu	37	chr9	135144972	135144972	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccaacaacagtaacaatGggtaaacttctgagctctct	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135144972	T	T	135144972	1	4	9	0	1	0	0	0	0	0	0	0	14254	1363	47	2		2	SETX	9	135144972	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	192201	135144972	6068459	10555	18706											
SETX	23064	broad.mit.edu	37	chr9	135145007	135145007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctggtacctaccatcaGggtcctcaaatgtccgagga	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135145007	T	T	135145007	3	4	9	1	0	0	0	0	1	0	0	0	14254	991	35	2	759	2	SETX	9	135145007	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	135145007	6068424	10556	18707											
SETX	23064	broad.mit.edu	37	chr9	135145048	135145048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaagaggctgtacttggctCgtgtgatggtgacattcaat	13	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135145048	A	A	135145048	3	1	9	1	0	0	0	0	1	0	0	0	14254	884	31	3	800	3	SETX	9	135145048	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	135145048	6068383	10557	18708											
SETX	23064	broad.mit.edu	37	chr9	135147174	135147174	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgaccctggaatgcatcCacagtgtctacttctgctgg	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135147174	A	A	135147174	2	1	9	1	0	0	0	0	0	0	0	1	14254	581	21	2		2	SETX	9	135147174	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2126	135147174	6066257	10558	18709											
SETX	23064	broad.mit.edu	37	chr9	135163661	135163661	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcatagagctcgctgccGggaaagctcatccagctgat	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135163661	T	T	135163661	2	4	9	1	0	0	0	0	0	0	0	1	14254	1115	39	1		1	SETX	9	135163661	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16487	135163661	6049770	10559	18710											
SETX	23064	broad.mit.edu	37	chr9	135203176	135203176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgacgaaatttctttggcGgcactatagcaggagttgtt	11	7	1	1	rs144334281	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135203176	T	T	135203176	3	4	9	1	0	0	0	0	1	0	0	0	14254	1116	39	1	4292	1	SETX	9	135203176	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39515	135203176	6010255	10560	18711											
SETX	23064	broad.mit.edu	37	chr9	135203334	135203334	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagacttcttttgtgaaacCgtagtggctctctgaatacg	10	8	2	3	rs111419285	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135203334	A	A	135203334	2	1	9	1	0	0	0	0	0	0	0	1	14254	639	23	1		1	SETX	9	135203334	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	158	135203334	6010097	10561	18712											
SETX	23064	broad.mit.edu	37	chr9	135203857	135203857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgctgctctggatgttccCtctcaaggcatattttgtcc	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135203857	A	A	135203857	3	1	9	1	0	0	0	0	1	0	0	0	14254	681	24	2	4973	2	SETX	9	135203857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	523	135203857	6009574	10562	18713											
SETX	23064	broad.mit.edu	37	chr9	135218091	135218091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaccatttcattgggatGgactaaaaacaaatagatcc	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135218091	T	T	135218091	3	4	9	1	0	0	0	0	1	0	0	0	14254	1348	47	2	7637	2	SETX	9	135218091	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14234	135218091	5995340	10563	18714											
SETX	23064	broad.mit.edu	37	chr9	135218184	135218184	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtgcttcaacacataactCgtctaaaaagaaaaaaataa	4	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135218184	A	A	135218184	4	1	9	1	0	0	0	0	0	1	0	0	14254	893	31	3	7730	3	SETX	9	135218184	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	135218184	5995247	10564	18715											
TTF1	7270	broad.mit.edu	37	chr9	135266068	135266068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccttgtagagtttttccCgaacaattgataggcaactt	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135266068	A	A	135266068	3	1	9	1	0	0	0	0	1	0	0	0	16844	652	23	1	599	1	TTF1	9	135266068	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47884	135266068	5947363	10565	18716											
TTF1	7270	broad.mit.edu	37	chr9	135266183	135266183	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagccttgattagtttccGggtttcagacttactccaag	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135266183	T	T	135266183	2	4	9	1	0	0	0	0	0	0	0	1	16844	1115	39	1		1	TTF1	9	135266183	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	115	135266183	5947248	10566	18717											
TTF1	7270	broad.mit.edu	37	chr9	135275540	135275540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtttcacggcagaaccCaaatccgcatctgaatcatc	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135275540	A	A	135275540	3	1	9	1	0	0	0	0	1	0	0	0	16844	593	21	2	1280	2	TTF1	9	135275540	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9357	135275540	5937891	10567	18718											
TTF1	7270	broad.mit.edu	37	chr9	135277523	135277523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccagtgtctcatattccCggttactggactttttcttt	8	10	2	0	rs147341865	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135277523	A	A	135277523	3	1	9	1	0	0	0	0	1	0	0	0	16844	652	23	1	2071	1	TTF1	9	135277523	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1983	135277523	5935908	10568	18719											
BARHL1	56751	broad.mit.edu	37	chr9	135464698	135464698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgctccagcggatgttccCgtcgccttatttctacccgc	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135464698	A	A	135464698	3	1	9	1	0	0	0	0	1	0	0	0	1318	652	23	1	783	1	BARHL1	9	135464698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	187175	135464698	5748733	10569	18720											
DDX31	64794	broad.mit.edu	37	chr9	135487541	135487541	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggggcatctcttagtcCgaagctcttcgccacatgcc	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135487541	A	A	135487541	4	1	9	1	0	0	0	0	0	1	0	0	4389	661	23	1	321	1	DDX31	9	135487541	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22843	135487541	5725890	10570	18721											
DDX31	64794	broad.mit.edu	37	chr9	135505692	135505692	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgacatattctgcctcCgaaggagccaaaatgagcag	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135505692	A	A	135505692	2	1	9	1	0	0	0	0	0	0	0	1	4389	639	23	1		1	DDX31	9	135505692	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18151	135505692	5707739	10571	18722											
DDX31	64794	broad.mit.edu	37	chr9	135537685	135537685	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagctcatgaaaagcagctGaagtaaacactttttcttgc	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135537685	T	T	135537685	4	4	9	1	0	0	0	0	0	1	0	0	4389	1294	45	3	1948	3	DDX31	9	135537685	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31993	135537685	5675746	10572	18723											
GTF3C4	9329	broad.mit.edu	37	chr9	135554803	135554803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagccttgtggaaaccCacccatgaggactcaaaaat	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135554803	A	A	135554803	2	1	9	1	0	0	0	0	0	0	0	1	6940	581	21	2		2	GTF3C4	9	135554803	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17118	135554803	5658628	10573	18724											
GTF3C4	9329	broad.mit.edu	37	chr9	135562696	135562696	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccatgacagcattgccCggcatccagctccagaaggt	10	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135562696	A	A	135562696	2	1	9	1	0	0	0	0	0	0	0	1	6940	643	23	1		1	GTF3C4	9	135562696	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7893	135562696	5650735	10574	18725											
C9orf98	158067	broad.mit.edu	37	chr9	135698650	135698650	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagacttttcccactgccCacaggcccgagcagcagcac	9	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135698650	A	A	135698650	2	1	9	1	0	0	0	0	0	0	0	1	2535	581	21	2		2	C9orf98	9	135698650	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	135954	135698650	5514781	10575	18726											
C9orf98	158067	broad.mit.edu	37	chr9	135702296	135702296	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgactttgaggattttGgggtaggagggaatgaccct	15	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135702296	T	T	135702296	2	4	9	1	0	0	0	0	0	0	0	1	2535	1335	47	2		2	C9orf98	9	135702296	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3646	135702296	5511135	10576	18727											
C9orf98	158067	broad.mit.edu	37	chr9	135702353	135702353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactccagcagtttctgagcCgtctccagctctgagatgtc	9	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135702353	A	A	135702353	2	1	9	1	0	0	0	0	0	0	0	1	2535	639	23	1		1	C9orf98	9	135702353	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	135702353	5511078	10577	18728											
C9orf98	158067	broad.mit.edu	37	chr9	135742312	135742312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttgttttccctgaggcGggtggacctaatattacaat	10	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135742312	T	T	135742312	2	4	9	1	0	0	0	0	0	0	0	1	2535	1103	39	1		1	C9orf98	9	135742312	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39959	135742312	5471119	10578	18729											
TSC1	7248	broad.mit.edu	37	chr9	135772862	135772862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgttccaaaagaaggtGgtctttcttggccaggtgag	12	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135772862	T	T	135772862	3	4	9	1	0	0	0	0	1	0	0	0	16730	1348	47	2	745	2	TSC1	9	135772862	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30550	135772862	5440569	10579	18730											
TSC1	7248	broad.mit.edu	37	chr9	135776981	135776981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatttcttcttaccttttGggaaacctgactgagcagca	7	11	3	2	rs67005768		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135776981	T	T	135776981	3	4	9	1	0	0	0	0	1	0	0	0	16730	1357	47	2	1017	2	TSC1	9	135776981	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4119	135776981	5436450	10580	18731											
TSC1	7248	broad.mit.edu	37	chr9	135779874	135779874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgagtaacaaagttacCgatcttaccaagaaaaaaac	5	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135779874	A	A	135779874	1	1	9	0	1	0	0	0	0	0	0	0	16730	667	23	1		1	TSC1	9	135779874	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2893	135779874	5433557	10581	18732											
TSC1	7248	broad.mit.edu	37	chr9	135786260	135786260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacattctgaaagccccaGggatttgcaataagtgtcaa	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135786260	T	T	135786260	1	4	9	0	1	0	0	0	0	0	0	0	16730	1015	35	2		2	TSC1	9	135786260	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6386	135786260	5427171	10582	18733											
TSC1	7248	broad.mit.edu	37	chr9	135786398	135786398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatacataccagttgtacCaaagactttactgtaagggt	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135786398	A	A	135786398	3	1	9	1	0	0	0	0	1	0	0	0	16730	594	21	2	2414	2	TSC1	9	135786398	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138	135786398	5427033	10583	18734											
TSC1	7248	broad.mit.edu	37	chr9	135786490	135786490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaccatagatgggctcCaaagagtagcctgggaagtt	11	9	0	2	rs118203490		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135786490	A	A	135786490	3	1	9	1	0	0	0	0	1	0	0	0	16730	595	21	2	2506	2	TSC1	9	135786490	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	135786490	5426941	10584	18735											
SURF6	6838	broad.mit.edu	37	chr9	136199535	136199535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctcttcttccggtccCgttcctgctttctccgccgc	7	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136199535	A	A	136199535	3	1	9	1	0	0	0	0	1	0	0	0	15524	652	23	1	638	1	SURF6	9	136199535	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	413045	136199535	5013896	10585	18736											
RPL7A	6130	broad.mit.edu	37	chr9	136216031	136216031	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttgtgtctcttagagacGggggcaatgatacatgcttc	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136216031	A	A	136216031	1	1	9	0	1	0	0	0	0	0	0	0	13711	1131	39	4		4	RPL7A	9	136216031	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16496	136216031	4997400	10586	18737											
RPL7A	6130	broad.mit.edu	37	chr9	136216438	136216438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaaaagagacctcaccCgctttgtgaaatggccccgc	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136216438	A	A	136216438	3	1	9	1	0	0	0	0	1	0	0	0	13711	652	23	1	167	1	RPL7A	9	136216438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	407	136216438	4996993	10587	18738											
SURF1	6834	broad.mit.edu	37	chr9	136221853	136221853	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacatggagccagaagccctCgaacacagacctggagcagc	12	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136221853	A	A	136221853	1	1	9	0	1	0	0	0	0	0	0	0	15521	899	31	3		3	SURF1	9	136221853	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5415	136221853	4991578	10588	18739											
SURF2	6835	broad.mit.edu	37	chr9	136227927	136227927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagaattttgtttatccCacagaagcagttgggctcgt	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136227927	A	A	136227927	1	1	9	0	1	0	0	0	0	0	0	0	15522	609	21	2		2	SURF2	9	136227927	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6074	136227927	4985504	10589	18740											
SURF2	6835	broad.mit.edu	37	chr9	136227982	136227982	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtcatcaccgcaaaccCaagagcttcagctcctgtaa	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136227982	A	A	136227982	2	1	9	1	0	0	0	0	0	0	0	1	15522	581	21	2		2	SURF2	9	136227982	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	136227982	4985449	10590	18741											
C9orf96	169436	broad.mit.edu	37	chr9	136249589	136249589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgatggcggtgataacGgagatgatttgctacatgtt	15	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136249589	T	T	136249589	1	4	9	0	1	0	0	0	0	0	0	0	2534	1131	39	1		1	C9orf96	9	136249589	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21607	136249589	4963842	10591	18742											
C9orf96	169436	broad.mit.edu	37	chr9	136270003	136270003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctccacagggacgaccCggaggtggtggagaacgtgg	17	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136270003	A	A	136270003	3	1	9	1	0	0	0	0	1	0	0	0	2534	652	23	1	1889	1	C9orf96	9	136270003	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20414	136270003	4943428	10592	18743											
REXO4	57109	broad.mit.edu	37	chr9	136277474	136277474	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcctatagtccgtcacGggctcagttggtttgacgta	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136277474	T	T	136277474	2	4	9	1	0	0	0	0	0	0	0	1	13351	1103	39	1		1	REXO4	9	136277474	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7471	136277474	4935957	10593	18744											
REXO4	57109	broad.mit.edu	37	chr9	136280011	136280011	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgccggcatctcctctcCcttcacttgaggcgaggtct	9	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136280011	A	A	136280011	4	1	9	1	0	0	0	0	0	1	0	0	13351	632	22	2	950	2	REXO4	9	136280011	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2537	136280011	4933420	10594	18745											
ADAMTS13	11093	broad.mit.edu	37	chr9	136280140	136280140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagcagccactgggaccCaaaataaaatacatgctgca	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136280140	A	A	136280140	1	1	9	0	1	0	0	0	0	0	0	0	258	609	21	2		2	ADAMTS13	9	136280140	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	129	136280140	4933291	10595	18746											
ADAMTS13	11093	broad.mit.edu	37	chr9	136288238	136288238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagttgtcttcaggctttGgagccacaggccgtgtcttc	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136288238	T	T	136288238	3	4	9	1	0	0	0	0	1	0	0	0	258	1339	47	2	129	2	ADAMTS13	9	136288238	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8098	136288238	4925193	10596	18747											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136403492	136403492	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagtccgtcccgggcccCgggaacaggacctgcacggg	16	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136403492	A	A	136403492	2	1	9	1	0	0	0	0	0	0	0	1	275	639	23	1		1	ADAMTSL2	9	136403492	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	115254	136403492	4809939	10597	18748											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136403560	136403560	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaggtgaggcccggccCgggcaggggcaccatggcct	18	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136403560	G	G	136403560	1	3	9	0	1	0	0	0	0	0	0	0	275	667	23	4		4	ADAMTSL2	9	136403560	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	136403560	4809871	10598	18749											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136409659	136409659	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtagagaggaagaagtcCgctgacgtgctaggtgggta	16	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136409659	A	A	136409659	2	1	9	1	0	0	0	0	0	0	0	1	275	639	23	1		1	ADAMTSL2	9	136409659	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6099	136409659	4803772	10599	18750											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136412042	136412042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgggagtttcctgtctcGggagcatttgagccggggtt	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136412042	T	T	136412042	1	4	9	0	1	0	0	0	0	0	0	0	275	1131	39	1		1	ADAMTSL2	9	136412042	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2383	136412042	4801389	10600	18751											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136412144	136412144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggccttttgtgaccggcGgctttgcccttccagctctt	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136412144	T	T	136412144	1	4	9	0	1	0	0	0	0	0	0	0	275	1131	39	1		1	ADAMTSL2	9	136412144	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	102	136412144	4801287	10601	18752											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136412218	136412218	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactacaaggtggacagcccCaagaacttcaacatcgcagg	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136412218	A	A	136412218	2	1	9	1	0	0	0	0	0	0	0	1	275	581	21	2		2	ADAMTSL2	9	136412218	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	74	136412218	4801213	10602	18753											
DBH	1621	broad.mit.edu	37	chr9	136517420	136517420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccggtgagtgcccagcGggaaggctgtcccactcact	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136517420	T	T	136517420	1	4	9	0	1	0	0	0	0	0	0	0	4283	1131	39	1		1	DBH	9	136517420	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	105202	136517420	4696011	10603	18754											
SARDH	1757	broad.mit.edu	37	chr9	136555627	136555627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggccacggccccgccCatggccaggtagtaaccgtc	13	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136555627	A	A	136555627	3	1	9	1	0	0	0	0	1	0	0	0	13953	594	21	2	836	2	SARDH	9	136555627	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38207	136555627	4657804	10604	18755											
SARDH	1757	broad.mit.edu	37	chr9	136573593	136573593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgctttggggatggccCgtcagggaagggctagccta	15	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136573593	A	A	136573593	1	1	9	0	1	0	0	0	0	0	0	0	13953	667	23	1		1	SARDH	9	136573593	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	17966	136573593	4639838	10605	18756											
VAV2	7410	broad.mit.edu	37	chr9	136637188	136637188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagcaaacacacggcccCggcggtcaccgcgtgagggc	14	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136637188	A	A	136637188	1	1	9	0	1	0	0	0	0	0	0	0	17259	667	23	1		1	VAV2	9	136637188	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	63595	136637188	4576243	10606	18757											
VAV2	7410	broad.mit.edu	37	chr9	136654426	136654426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccggactttcagttcccCgtcaatctttggtcttccaa	8	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136654426	A	A	136654426	3	1	9	1	0	0	0	0	1	0	0	0	17259	652	23	1	1476	1	VAV2	9	136654426	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17238	136654426	4559005	10607	18758											
WDR5	11091	broad.mit.edu	37	chr9	137005774	137005774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaatccaaactggtcacGggtggaacgtacagtggtgg	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137005774	T	T	137005774	1	4	9	0	1	0	0	0	0	0	0	0	17430	1131	39	1		1	WDR5	9	137005774	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	351348	137005774	4207657	10608	18759											
WDR5	11091	broad.mit.edu	37	chr9	137019512	137019512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtcgcacgtgggggatGgggagcgggtcccacctcct	17	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137019512	T	T	137019512	1	4	9	0	1	0	0	0	0	0	0	0	17430	1363	47	2		2	WDR5	9	137019512	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13738	137019512	4193919	10609	18760											
WDR5	11091	broad.mit.edu	37	chr9	137019627	137019627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttttgtgaagttctcccCgaacggcaaatacatcctgg	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137019627	A	A	137019627	3	1	9	1	0	0	0	0	1	0	0	0	17430	652	23	1	705	1	WDR5	9	137019627	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115	137019627	4193804	10610	18761											
COL5A1	1289	broad.mit.edu	37	chr9	137623497	137623497	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccggcgaaccaggatacCatctatgaaggggtgagagg	15	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137623497	A	A	137623497	2	1	9	1	0	0	0	0	0	0	0	1	3728	581	21	2		2	COL5A1	9	137623497	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	603870	137623497	3589934	10611	18762											
FCN2	2220	broad.mit.edu	37	chr9	137772704	137772704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggggtcctgggcgctGccaccctgctgctctctttc	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137772704	T	T	137772704	3	4	9	1	0	0	0	0	1	0	0	0	5849	1319	46	3	39	3	FCN2	9	137772704	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149207	137772704	3440727	10612	18763											
FCN1	2219	broad.mit.edu	37	chr9	137801878	137801878	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagttgttgttgtggccCgttagagaattacctgctca	11	7	1	2	rs139969832		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137801878	A	A	137801878	2	1	9	1	0	0	0	0	0	0	0	1	5848	639	23	1		1	FCN1	9	137801878	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29174	137801878	3411553	10613	18764											
KIAA0649	9858	broad.mit.edu	37	chr9	138376994	138376994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccagggctccgcctcccCggtcagtgtgagcagcgatg	15	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138376994	A	A	138376994	3	1	9	1	0	0	0	0	1	0	0	0	8257	652	23	1	640	1	KIAA0649	9	138376994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	575116	138376994	2836437	10614	18765											
KIAA0649	9858	broad.mit.edu	37	chr9	138378032	138378032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagaggtgagagctgccCgcaggctgcccagggtccac	16	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138378032	A	A	138378032	3	1	9	1	0	0	0	0	1	0	0	0	8257	652	23	1	1678	1	KIAA0649	9	138378032	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1038	138378032	2835399	10615	18766											
KCNT1	57582	broad.mit.edu	37	chr9	138669223	138669223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagacgccaaggcctacGggttcaagaacaagctgatc	11	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138669223	T	T	138669223	3	4	9	1	0	0	0	0	1	0	0	0	8161	1116	39	1	2471	1	KCNT1	9	138669223	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	291191	138669223	2544208	10616	18767											
KCNT1	57582	broad.mit.edu	37	chr9	138670519	138670519	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catcctcagccacgggccctCggtcccgccaccagcctgga	10	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138670519	T	T	138670519	1	4	9	0	1	0	0	0	0	0	0	0	8161	899	31	4		4	KCNT1	9	138670519	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1296	138670519	2542912	10617	18768											
CAMSAP1	157922	broad.mit.edu	37	chr9	138712974	138712974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggacagagtaagtgtcCgctgattgctttcatcatgg	12	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138712974	A	A	138712974	3	1	9	1	0	0	0	0	1	0	0	0	2637	652	23	1	1303	1	CAMSAP1	9	138712974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42455	138712974	2500457	10618	18769											
CAMSAP1	157922	broad.mit.edu	37	chr9	138714813	138714813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgtaaggcctaaggccCggggtgaggccctggggaac	17	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138714813	A	A	138714813	3	1	9	1	0	0	0	0	1	0	0	0	2637	652	23	1	3142	1	CAMSAP1	9	138714813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1839	138714813	2498618	10619	18770											
CAMSAP1	157922	broad.mit.edu	37	chr9	138714893	138714893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagccacaagctcctcttcCtcatcctcaatactgacatt	3	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138714893	A	A	138714893	3	1	9	1	0	0	0	0	1	0	0	0	2637	680	24	2	3222	2	CAMSAP1	9	138714893	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	138714893	2498538	10620	18771											
UBAC1	10422	broad.mit.edu	37	chr9	138847264	138847264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagctcccatgagcacactGgggaaaaatagaaatttcaa	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138847264	T	T	138847264	1	4	9	0	1	0	0	0	0	0	0	0	16960	1363	47	2		2	UBAC1	9	138847264	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	132371	138847264	2366167	10621	18772											
CARD9	64170	broad.mit.edu	37	chr9	139266348	139266348	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcggggcaacactgaccCactttccgtttgcggatgac	11	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139266348	A	A	139266348	2	1	9	1	0	0	0	0	0	0	0	1	2678	608	21	2		2	CARD9	9	139266348	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	419084	139266348	1947083	10622	18773											
SNAPC4	6621	broad.mit.edu	37	chr9	139275812	139275812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggggtgctggccaggcGggcctgctgcagctgctccc	16	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139275812	T	T	139275812	3	4	9	1	0	0	0	0	1	0	0	0	14951	1116	39	1	2079	1	SNAPC4	9	139275812	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9464	139275812	1937619	10623	18774											
SNAPC4	6621	broad.mit.edu	37	chr9	139282004	139282004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaccaatcctgctcccCgtatttggcaacagcttgaa	6	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139282004	A	A	139282004	3	1	9	1	0	0	0	0	1	0	0	0	14951	652	23	1	3195	1	SNAPC4	9	139282004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6192	139282004	1931427	10624	18775											
SNAPC4	6621	broad.mit.edu	37	chr9	139292742	139292742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggaggctaggtacaaGgggcttacctgcttcagaat	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139292742	T	T	139292742	1	4	9	0	1	0	0	0	0	0	0	0	14951	1015	35	2		2	SNAPC4	9	139292742	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10738	139292742	1920689	10625	18776											
SNAPC4	6621	broad.mit.edu	37	chr9	139292887	139292887	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctacatccatgactccCgcctgcctccaaaacacacc	4	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139292887	A	A	139292887	1	1	9	0	1	0	0	0	0	0	0	0	14951	667	23	1		1	SNAPC4	9	139292887	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	145	139292887	1920544	10626	18777											
SDCCAG3	10807	broad.mit.edu	37	chr9	139299543	139299543	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagagaagaaacccatacGgtcatcagctccaggttctg	9	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139299543	T	T	139299543	2	4	9	1	0	0	0	0	0	0	0	1	14071	1130	39	1		1	SDCCAG3	9	139299543	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6656	139299543	1913888	10627	18778											
SEC16A	9919	broad.mit.edu	37	chr9	139370620	139370620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatctgaactggtcactcGgggaggaagggtccaaattg	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139370620	T	T	139370620	3	4	9	1	0	0	0	0	1	0	0	0	14099	1116	39	1	5745	1	SEC16A	9	139370620	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71077	139370620	1842811	10628	18779											
NOTCH1	4851	broad.mit.edu	37	chr9	139404399	139404399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtctgtgcaggagccccCgttgtgacacgggtctggga	16	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139404399	A	A	139404399	3	1	9	1	0	0	0	0	1	0	0	0	10642	652	23	1	4980	1	NOTCH1	9	139404399	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33779	139404399	1809032	10629	18780											
AGPAT2	10555	broad.mit.edu	37	chr9	139571543	139571543	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccccaggaagagcagctccCgcttggcgatctgcacgcag	13	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139571543	G	G	139571543	3	3	9	1	0	0	0	0	1	0	0	0	387	652	23	4	490	4	AGPAT2	9	139571543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	167144	139571543	1641888	10630	18781											
LCN8	138307	broad.mit.edu	37	chr9	139650993	139650993	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaaaagcgaattttccCgtactgtctatttctgagcc	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139650993	A	A	139650993	2	1	9	1	0	0	0	0	0	0	0	1	8758	639	23	1		1	LCN8	9	139650993	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79450	139650993	1562438	10631	18782											
PTGDS	5730	broad.mit.edu	37	chr9	139873751	139873751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacagctaccggagtcccCgtgagtggggcctccaccgg	13	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139873751	A	A	139873751	3	1	9	1	0	0	0	0	1	0	0	0	12848	666	23	1	341	1	PTGDS	9	139873751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	222758	139873751	1339680	10632	18783											
ABCA2	20	broad.mit.edu	37	chr9	139905626	139905626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgccttccccgccccacGggccccctcaccaatcttgg	7	23	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139905626	T	T	139905626	1	4	9	0	1	0	0	0	0	0	0	0	32	1131	39	1		1	ABCA2	9	139905626	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31875	139905626	1307805	10633	18784											
FUT7	2529	broad.mit.edu	37	chr9	139925477	139925477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgttgcgccagaatttctcCgtaatgtagtcgcggtgctg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139925477	A	A	139925477	2	1	9	1	0	0	0	0	0	0	0	1	6169	639	23	1		1	FUT7	9	139925477	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19851	139925477	1287954	10634	18785											
C9orf139	401563	broad.mit.edu	37	chr9	139929378	139929378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctgcgagctggcaaacGgggctcgggggttttgccca	16	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139929378	T	T	139929378	3	4	9	1	0	0	0	0	1	0	0	0	2485	1116	39	1	451	1	C9orf139	9	139929378	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3901	139929378	1284053	10635	18786											
C9orf140	89958	broad.mit.edu	37	chr9	139960771	139960771	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgacgttcccctcgggcacgGggagcccgccgggcatcccc	14	19	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139960771	C	C	139960771	2	2	9	1	0	0	0	0	0	0	0	1	2486	1219	43	4		4	C9orf140	9	139960771	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31393	139960771	1252660	10636	18787											
UAP1L1	91373	broad.mit.edu	37	chr9	139973522	139973522	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgcacgtgtactgtgtGgacaacatcctggtgcggct	13	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139973522	T	T	139973522	2	4	9	1	0	0	0	0	0	0	0	1	16952	1335	47	2		2	UAP1L1	9	139973522	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12751	139973522	1239909	10637	18788											
UAP1L1	91373	broad.mit.edu	37	chr9	139974548	139974548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagccgctaaaaccgaacGggataaagatggagaagttt	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139974548	T	T	139974548	3	4	9	1	0	0	0	0	1	0	0	0	16952	1116	39	1	1154	1	UAP1L1	9	139974548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1026	139974548	1238883	10638	18789											
UAP1L1	91373	broad.mit.edu	37	chr9	139974584	139974584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgtgtttgatgtgttcCggtttgctaagttagtagta	12	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139974584	A	A	139974584	2	1	9	1	0	0	0	0	0	0	0	1	16952	643	23	1		1	UAP1L1	9	139974584	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	139974584	1238847	10639	18790											
MAN1B1	11253	broad.mit.edu	37	chr9	139994082	139994082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcagtgctctgcctgaGggtgtccatctgtgccgacg	13	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139994082	T	T	139994082	1	4	9	0	1	0	0	0	0	0	0	0	9304	1015	35	2		2	MAN1B1	9	139994082	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19498	139994082	1219349	10640	18791											
MAN1B1	11253	broad.mit.edu	37	chr9	140001842	140001842	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagacggggctgagtccCgagatcgtgcacttcaacct	13	11	1	3	rs139920960		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140001842	A	A	140001842	2	1	9	1	0	0	0	0	0	0	0	1	9304	639	23	1		1	MAN1B1	9	140001842	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7760	140001842	1211589	10641	18792											
GRIN1	2902	broad.mit.edu	37	chr9	140052898	140052898	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcaatgaggatggggacCggaagttcgccaactacagc	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140052898	A	A	140052898	2	1	9	1	0	0	0	0	0	0	0	1	6844	643	23	1		1	GRIN1	9	140052898	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51056	140052898	1160533	10642	18793											
NDOR1	27158	broad.mit.edu	37	chr9	140100651	140100651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcccggtccttacagccGgaggtcttacgtgtgtgtgt	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140100651	T	T	140100651	1	4	9	0	1	0	0	0	0	0	0	0	10344	1131	39	1		1	NDOR1	9	140100651	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47753	140100651	1112780	10643	18794											
NDOR1	27158	broad.mit.edu	37	chr9	140100699	140100699	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaggtgaatctgattaacGagcccctggtgatatttgtt	11	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140100699	T	T	140100699	4	4	9	1	0	0	0	0	0	1	0	0	10344	1059	37	3	157	3	NDOR1	9	140100699	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48	140100699	1112732	10644	18795											
NDOR1	27158	broad.mit.edu	37	chr9	140100813	140100813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccctcgaccctcacccCgttttcattgcctggcgtct	7	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140100813	A	A	140100813	1	1	9	0	1	0	0	0	0	0	0	0	10344	667	23	1		1	NDOR1	9	140100813	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	140100813	1112618	10645	18796											
SLC34A3	142680	broad.mit.edu	37	chr9	140126160	140126160	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctgcccgaaatccatgccGagttcccttcccggcagcca	8	19	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140126160	T	T	140126160	2	4	9	1	0	0	0	0	0	0	0	1	14683	1045	37	3		3	SLC34A3	9	140126160	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25347	140126160	1087271	10646	18797											
TUBB2C	10383	broad.mit.edu	37	chr9	140137746	140137746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtgacatcccacctcGggggctaaaaatgtccgcca	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140137746	T	T	140137746	3	4	9	1	0	0	0	0	1	0	0	0	16882	1116	39	1	1090	1	TUBB2C	9	140137746	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11586	140137746	1075685	10647	18798											
TUBB2C	10383	broad.mit.edu	37	chr9	140137873	140137873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcactggtacacgggcgaGggcatggacgagatggagtt	17	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140137873	T	T	140137873	3	4	9	1	0	0	0	0	1	0	0	0	16882	991	35	2	1217	2	TUBB2C	9	140137873	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127	140137873	1075558	10648	18799											
COBRA1	25920	broad.mit.edu	37	chr9	140151381	140151381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacaaccaggccctcttcGgggacgaggtttccccactc	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140151381	T	T	140151381	3	4	9	1	0	0	0	0	1	0	0	0	3687	1116	39	1	486	1	COBRA1	9	140151381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13508	140151381	1062050	10649	18800											
NOXA1	10811	broad.mit.edu	37	chr9	140328717	140328717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactgtgacggccgcatcGgcatcttccccaagtgcttc	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140328717	T	T	140328717	3	4	9	1	0	0	0	0	1	0	0	0	10655	1116	39	1	1411	1	NOXA1	9	140328717	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	177336	140328717	884714	10650	18801											
ZMYND19	116225	broad.mit.edu	37	chr9	140477533	140477533	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgttggcattataataccGggtcacatttaggacaggaa	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140477533	T	T	140477533	2	4	9	1	0	0	0	0	0	0	0	1	17836	1115	39	1		1	ZMYND19	9	140477533	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	148816	140477533	735898	10651	18802											
ZMYND19	116225	broad.mit.edu	37	chr9	140482208	140482208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctcccagagccccttcctCggttcttgtcaaaggcatag	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140482208	A	A	140482208	3	1	9	1	0	0	0	0	1	0	0	0	17836	884	31	3	520	3	ZMYND19	9	140482208	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4675	140482208	731223	10652	18803											
ZMYND19	116225	broad.mit.edu	37	chr9	140482272	140482272	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcatccacttccattcGggcctgagaaggaacaaggg	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140482272	T	T	140482272	2	4	9	1	0	0	0	0	0	0	0	1	17836	1124	39	1		1	ZMYND19	9	140482272	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	64	140482272	731159	10653	18804											
ZMYND19	116225	broad.mit.edu	37	chr9	140482290	140482290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggcctgagaaggaacaaGggaaagagctgttaaaaaac	13	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140482290	T	T	140482290	1	4	9	0	1	0	0	0	0	0	0	0	17836	1015	35	2		2	ZMYND19	9	140482290	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18	140482290	731141	10654	18805											
ZMYND19	116225	broad.mit.edu	37	chr9	140483136	140483136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtagctctccaccagcGggatgtcctgctcatcgatc	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140483136	T	T	140483136	3	4	9	1	0	0	0	0	1	0	0	0	17836	1116	39	1	617	1	ZMYND19	9	140483136	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	846	140483136	730295	10655	18806											
EHMT1	79813	broad.mit.edu	37	chr9	140648608	140648608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtggtttatatgcctgccCgtttggttctccagagttcg	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140648608	A	A	140648608	1	1	9	0	1	0	0	0	0	0	0	0	5023	667	23	1		1	EHMT1	9	140648608	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	165472	140648608	564823	10656	18807											
EHMT1	79813	broad.mit.edu	37	chr9	140669536	140669536	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctctcgtgactctgacattGaccaccagtcttgtctgatt	7	13	4	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140669536	A	A	140669536	1	1	9	0	1	0	0	0	0	0	0	0	5023	1305	45	4		4	EHMT1	9	140669536	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20928	140669536	543895	10657	18808											
EHMT1	79813	broad.mit.edu	37	chr9	140685343	140685343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagaagaccagaggacccCgttgatggaagcagccgaaa	12	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140685343	A	A	140685343	3	1	9	1	0	0	0	0	1	0	0	0	5023	652	23	1	2537	1	EHMT1	9	140685343	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15807	140685343	528088	10658	18809											
CACNA1B	774	broad.mit.edu	37	chr9	140777375	140777375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcccagcgtgtgaggccCgggcgtgtgctctctgaagc	17	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140777375	A	A	140777375	1	1	9	0	1	0	0	0	0	0	0	0	2565	667	23	1		1	CACNA1B	9	140777375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92032	140777375	436056	10659	18810											
CACNA1B	774	broad.mit.edu	37	chr9	140938316	140938316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcccccggcctatcgtccCatacagctccatgttctgtt	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140938316	A	A	140938316	3	1	9	1	0	0	0	0	1	0	0	0	2565	594	21	2	3459	2	CACNA1B	9	140938316	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160941	140938316	275115	10660	18811											
CACNA1B	774	broad.mit.edu	37	chr9	140938410	140938410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacccatgcatcatgaccCgtgggatctcagtagccagc	9	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140938410	A	A	140938410	1	1	9	0	1	0	0	0	0	0	0	0	2565	667	23	1		1	CACNA1B	9	140938410	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	140938410	275021	10661	18812											
CACNA1B	774	broad.mit.edu	37	chr9	140943632	140943632	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttttctggactatgaCgtatctaacgtgtgtttctc	8	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140943632	T	T	140943632	1	4	9	0	1	0	0	0	0	0	0	0	2565	551	19	4		4	CACNA1B	9	140943632	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5222	140943632	269799	10662	18813											
TUBB8	347688	broad.mit.edu	37	chr10	93294	93294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggctgtttttacgttgttGgggagccagtcagcaaagta	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93294	T	T	93294	2	4	9	1	0	0	0	0	0	0	0	1	16887	1335	47	2		2	TUBB8	10	93294	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08		93294	135441453	10663	18814											
ZMYND11	10771	broad.mit.edu	37	chr10	267139	267139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtacttttttgtaggactGggaaacagaaaatcatgact	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	267139	T	T	267139	3	4	9	1	0	0	0	0	1	0	0	0	17832	1357	47	2	291	2	ZMYND11	10	267139	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	173845	267139	135267608	10664	18815											
ZMYND11	10771	broad.mit.edu	37	chr10	294323	294323	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctagccaggaaataccCacgatgcctcagcccatcga	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	294323	A	A	294323	2	1	9	1	0	0	0	0	0	0	0	1	17832	581	21	2		2	ZMYND11	10	294323	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27184	294323	135240424	10665	18816											
ZMYND11	10771	broad.mit.edu	37	chr10	298271	298271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaagtctaaagactgcccCgatttcttacctgcagtgct	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	298271	A	A	298271	1	1	9	0	1	0	0	0	0	0	0	0	17832	667	23	1		1	ZMYND11	10	298271	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3948	298271	135236476	10666	18817											
DIP2C	22982	broad.mit.edu	37	chr10	327172	327172	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttatgggctctgatgacCgaggtctcaatgtcgattgg	12	8	2	2	rs146388855	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	327172	A	A	327172	2	1	9	1	0	0	0	0	0	0	0	1	4569	639	23	1		1	DIP2C	10	327172	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28901	327172	135207575	10667	18818											
DIP2C	22982	broad.mit.edu	37	chr10	334263	334263	+	Intron	SNP	G	T	T													aagcccatacagtcagaagcGaacggatacagaaatgcgtg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	334263	T	T	334263	1	4	9	0	1	0	0	0	0	0	0	0	4569	1073	37	3		3	DIP2C	10	334263	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7091	334263	135200484	10668	18819	122	2									
DIP2C	22982	broad.mit.edu	37	chr10	334267	334267	+	Intron	SNP	G	T	T													ccatacagtcagaagcgaacGgatacagaaatgcgtgcctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	334267	T	T	334267	1	4	9	0	1	0	0	0	0	0	0	0	4569	1131	39	1		1	DIP2C	10	334267	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	334267	135200480	10669	18820	122	2									
DIP2C	22982	broad.mit.edu	37	chr10	415567	415567	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggctggttactgtcatcCgtgggcctgtaatgacagtt	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	415567	A	A	415567	2	1	9	1	0	0	0	0	0	0	0	1	4569	639	23	1		1	DIP2C	10	415567	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	81300	415567	135119180	10670	18821											
DIP2C	22982	broad.mit.edu	37	chr10	436257	436257	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgtgggaaccagtctcGgggcggtttggagagatgtt	17	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	436257	T	T	436257	2	4	9	1	0	0	0	0	0	0	0	1	4569	1124	39	1		1	DIP2C	10	436257	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20690	436257	135098490	10671	18822											
DIP2C	22982	broad.mit.edu	37	chr10	454887	454887	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatctccaggccggaccatGggttcctgctttgtgcctaa	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	454887	T	T	454887	2	4	9	1	0	0	0	0	0	0	0	1	4569	1335	47	2		2	DIP2C	10	454887	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18630	454887	135079860	10672	18823											
DIP2C	22982	broad.mit.edu	37	chr10	465053	465053	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtacttgggcgctgtccGggaccccgtggaaccctgcg	15	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	465053	T	T	465053	2	4	9	1	0	0	0	0	0	0	0	1	4569	1115	39	1		1	DIP2C	10	465053	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10166	465053	135069694	10673	18824											
DIP2C	22982	broad.mit.edu	37	chr10	518347	518347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggcacaggtggcagatGgacgtattgtatcaccccac	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	518347	T	T	518347	1	4	9	0	1	0	0	0	0	0	0	0	4569	1363	47	2		2	DIP2C	10	518347	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53294	518347	135016400	10674	18825											
LARP4B	23185	broad.mit.edu	37	chr10	863610	863610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcaaagcgcctgacacGgaacccgtacctagacactg	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	863610	T	T	863610	1	4	9	0	1	0	0	0	0	0	0	0	8703	1131	39	1		1	LARP4B	10	863610	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	345263	863610	134671137	10675	18826											
LARP4B	23185	broad.mit.edu	37	chr10	909766	909766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgggtccgactcctgcGggtctggcaatgcggcattc	14	13	1	0	rs140866892		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	909766	T	T	909766	3	4	9	1	0	0	0	0	1	0	0	0	8703	1116	39	1	1925	1	LARP4B	10	909766	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46156	909766	134624981	10676	18827											
GTPBP4	23560	broad.mit.edu	37	chr10	1043184	1043184	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtttgccaaccattgatcCgaataccaggaccctgcttt	7	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1043184	A	A	1043184	3	1	9	1	0	0	0	0	1	0	0	0	6947	652	23	1	515	1	GTPBP4	10	1043184	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133418	1043184	134491563	10677	18828											
GTPBP4	23560	broad.mit.edu	37	chr10	1046796	1046796	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccagaacatcagacctctCttcatcaacaaggtgtgtgt	7	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1046796	A	A	1046796	2	1	9	1	0	0	0	0	0	0	0	1	6947	900	32	3		3	GTPBP4	10	1046796	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3612	1046796	134487951	10678	18829											
GTPBP4	23560	broad.mit.edu	37	chr10	1063172	1063172	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggacaggagatagtatcCgtttggttggcgtggcttcg	15	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1063172	A	A	1063172	1	1	9	0	1	0	0	0	0	0	0	0	6947	667	23	1		1	GTPBP4	10	1063172	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	16376	1063172	134471575	10679	18830											
IDI2	91734	broad.mit.edu	37	chr10	1068645	1068645	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacgtgactttcgtgtcCgacctctgctgtatcaggat	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1068645	A	A	1068645	2	1	9	1	0	0	0	0	0	0	0	1	7570	639	23	1		1	IDI2	10	1068645	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5473	1068645	134466102	10680	18831											
PFKP	5214	broad.mit.edu	37	chr10	3175425	3175425	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtgaaaactacaccacCgacttcatttaccagctgta	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3175425	A	A	3175425	2	1	9	1	0	0	0	0	0	0	0	1	11861	639	23	1		1	PFKP	10	3175425	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2106780	3175425	132359322	10681	18832											
PFKP	5214	broad.mit.edu	37	chr10	3176765	3176765	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaaactcaaggaggccCggggcagaggtaaggggtct	16	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3176765	A	A	3176765	2	1	9	1	0	0	0	0	0	0	0	1	11861	643	23	1		1	PFKP	10	3176765	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1340	3176765	132357982	10682	18833											
PITRM1	10531	broad.mit.edu	37	chr10	3189381	3189381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtgtttcttgatacgcGggagcttcctcaggatgggt	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3189381	T	T	3189381	3	4	9	1	0	0	0	0	1	0	0	0	12048	1116	39	1	848	1	PITRM1	10	3189381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12616	3189381	132345366	10683	18834											
PITRM1	10531	broad.mit.edu	37	chr10	3191888	3191888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaggctggagaaggccCggaaatacaccatgccattg	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3191888	A	A	3191888	3	1	9	1	0	0	0	0	1	0	0	0	12048	652	23	1	1365	1	PITRM1	10	3191888	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2507	3191888	132342859	10684	18835											
PITRM1	10531	broad.mit.edu	37	chr10	3197738	3197738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaacaagtccactaggccCgagtgcaggttagggactcg	12	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3197738	A	A	3197738	1	1	9	0	1	0	0	0	0	0	0	0	12048	667	23	1		1	PITRM1	10	3197738	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5850	3197738	132337009	10685	18836											
AKR1E2	83592	broad.mit.edu	37	chr10	4873009	4873009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggaaggcgctgtaagacGggaggatctgttcattgcca	14	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4873009	T	T	4873009	3	4	9	1	0	0	0	0	1	0	0	0	474	1116	39	1	188	1	AKR1E2	10	4873009	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1675271	4873009	130661738	10686	18837											
AKR1C4	1109	broad.mit.edu	37	chr10	5242255	5242255	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggttggactggccatcCgaagcaagattgcagatggc	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5242255	A	A	5242255	2	1	9	1	0	0	0	0	0	0	0	1	472	644	23	1		1	AKR1C4	10	5242255	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	369246	5242255	130292492	10687	18838											
TUBAL3	79861	broad.mit.edu	37	chr10	5437398	5437398	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccgctaaggagctgctcGgggtggaagagtgaacggtg	17	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5437398	T	T	5437398	2	4	9	1	0	0	0	0	0	0	0	1	16877	1103	39	1		1	TUBAL3	10	5437398	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	195143	5437398	130097349	10688	18839											
NET1	10276	broad.mit.edu	37	chr10	5496925	5496925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagatattgataatacaGggagtcctctctgatatcaa	7	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5496925	T	T	5496925	3	4	9	1	0	0	0	0	1	0	0	0	10433	991	35	2	1176	2	NET1	10	5496925	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59527	5496925	130037822	10689	18840											
ASB13	79754	broad.mit.edu	37	chr10	5683811	5683811	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcccgcggttgtcccGggcgtagatgttgccgccaa	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5683811	T	T	5683811	2	4	9	1	0	0	0	0	0	0	0	1	1021	1115	39	1		1	ASB13	10	5683811	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	186886	5683811	129850936	10690	18841											
C10orf18	54906	broad.mit.edu	37	chr10	5772796	5772796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaagtgtctactgctttGgacttgctagcagagcatcc	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5772796	T	T	5772796	3	4	9	1	0	0	0	0	1	0	0	0	1607	1339	47	2	864	2	C10orf18	10	5772796	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	88985	5772796	129761951	10691	18842											
C10orf18	54906	broad.mit.edu	37	chr10	5784166	5784166	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaatcatacgatcttccCgaaaggttgtagaacacagc	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5784166	A	A	5784166	2	1	9	1	0	0	0	0	0	0	0	1	1607	644	23	1		1	C10orf18	10	5784166	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11370	5784166	129750581	10692	18843											
C10orf18	54906	broad.mit.edu	37	chr10	5790626	5790626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggagctattgaatgtcGgggtttcctccctttgtgct	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5790626	T	T	5790626	3	4	9	1	0	0	0	0	1	0	0	0	1607	1116	39	1	5288	1	C10orf18	10	5790626	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6460	5790626	129744121	10693	18844											
GDI2	2665	broad.mit.edu	37	chr10	5827118	5827118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttaccttgcaaatccttGgggcagttctccaaggccat	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5827118	T	T	5827118	3	4	9	1	0	0	0	0	1	0	0	0	6385	1357	47	2	655	2	GDI2	10	5827118	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36492	5827118	129707629	10694	18845											
ANKRD16	54522	broad.mit.edu	37	chr10	5920165	5920165	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctgagccagggtgccCgtgatgtcttcagaatcctt	12	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5920165	A	A	5920165	2	1	9	1	0	0	0	0	0	0	0	1	645	639	23	1		1	ANKRD16	10	5920165	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	93047	5920165	129614582	10695	18846											
FBXO18	84893	broad.mit.edu	37	chr10	5960359	5960359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatctttgtaggggaccCgcaccagcagatctatacct	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5960359	A	A	5960359	3	1	9	1	0	0	0	0	1	0	0	0	5788	652	23	1	2230	1	FBXO18	10	5960359	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40194	5960359	129574388	10696	18847											
IL2RA	3559	broad.mit.edu	37	chr10	6067872	6067872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagcatatagagtgaccCgctttttattctgcggaaac	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6067872	A	A	6067872	3	1	9	1	0	0	0	0	1	0	0	0	7756	652	23	1	665	1	IL2RA	10	6067872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107513	6067872	129466875	10697	18848											
IL2RA	3559	broad.mit.edu	37	chr10	6067970	6067970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtgtgggatctctggcGggtcatcgtcacagagctct	15	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6067970	T	T	6067970	3	4	9	1	0	0	0	0	1	0	0	0	7756	1116	39	1	763	1	IL2RA	10	6067970	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98	6067970	129466777	10698	18849											
PFKFB3	5209	broad.mit.edu	37	chr10	6258714	6258714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagaggagacacatgatcCttcattttgccaaagaaaat	9	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6258714	A	A	6258714	3	1	9	1	0	0	0	0	1	0	0	0	11857	681	24	2	450	2	PFKFB3	10	6258714	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	190744	6258714	129276033	10699	18850											
PFKFB3	5209	broad.mit.edu	37	chr10	6268204	6268204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacgcaatagtgtcacccCgctagccagccccgaaccca	9	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6268204	A	A	6268204	3	1	9	1	0	0	0	0	1	0	0	0	11857	652	23	1	1465	1	PFKFB3	10	6268204	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9490	6268204	129266543	10700	18851											
PFKFB3	5209	broad.mit.edu	37	chr10	6274874	6274874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaacatgaaaggctcccGgagcagcgctgactcctcca	10	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6274874	T	T	6274874	3	4	9	1	0	0	0	0	1	0	0	0	11857	1116	39	1	1610	1	PFKFB3	10	6274874	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6670	6274874	129259873	10701	18852											
PRKCQ	5588	broad.mit.edu	37	chr10	6506243	6506243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaactgacaagaacagtGgaaaactcccaaacccttta	6	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6506243	T	T	6506243	1	4	9	0	1	0	0	0	0	0	0	0	12621	1363	47	2		2	PRKCQ	10	6506243	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	231369	6506243	129028504	10702	18853											
PRKCQ	5588	broad.mit.edu	37	chr10	6506333	6506333	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtacattaagtcccctcCgttgaggtactccatcacaa	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6506333	A	A	6506333	4	1	9	1	0	0	0	0	0	1	0	0	12621	661	23	1	757	1	PRKCQ	10	6506333	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	6506333	129028414	10703	18854											
PRKCQ	5588	broad.mit.edu	37	chr10	6506389	6506389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaaaaacaaaacaattcCaacttttatttcatttcatt	3	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6506389	A	A	6506389	1	1	9	0	1	0	0	0	0	0	0	0	12621	609	21	2		2	PRKCQ	10	6506389	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	6506389	129028358	10704	18855											
PRKCQ	5588	broad.mit.edu	37	chr10	6525370	6525370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcatcagttcctggagttGggccatagcattctcccgtg	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6525370	T	T	6525370	1	4	9	0	1	0	0	0	0	0	0	0	12621	1363	47	2		2	PRKCQ	10	6525370	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18981	6525370	129009377	10705	18856											
PRKCQ	5588	broad.mit.edu	37	chr10	6527124	6527124	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagctacctctttttccCggtgtcggtaaacatggcgg	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6527124	A	A	6527124	2	1	9	1	0	0	0	0	0	0	0	1	12621	639	23	1		1	PRKCQ	10	6527124	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1754	6527124	129007623	10706	18857											
PRKCQ	5588	broad.mit.edu	37	chr10	6539185	6539185	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccctcttacttacgtcGgcactggtagccctgtttgt	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6539185	T	T	6539185	2	4	9	1	0	0	0	0	0	0	0	1	12621	1124	39	1		1	PRKCQ	10	6539185	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12061	6539185	128995562	10707	18858											
PRKCQ	5588	broad.mit.edu	37	chr10	6553151	6553151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctggatatacatctgccCgttctctaggaacagaaacg	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6553151	A	A	6553151	3	1	9	1	0	0	0	0	1	0	0	0	12621	652	23	1	2060	1	PRKCQ	10	6553151	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13966	6553151	128981596	10708	18859											
SFMBT2	57713	broad.mit.edu	37	chr10	7214724	7214724	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacgattctttcatctgatAgttcatttgtgccttacgaa	6	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7214724	T	T	7214724	1	4	9	0	1	0	0	0	0	0	0	0	14271	435	15	5		5	SFMBT2	10	7214724	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	661573	7214724	128320023	10709	18860											
SFMBT2	57713	broad.mit.edu	37	chr10	7218026	7218026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaggactaaacaaatttGgacagcactctagcttggca	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7218026	T	T	7218026	3	4	9	1	0	0	0	0	1	0	0	0	14271	1348	47	2	794	2	SFMBT2	10	7218026	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3302	7218026	128316721	10710	18861											
SFMBT2	57713	broad.mit.edu	37	chr10	7326046	7326046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtactgaaaagggttctGggaatcctgaagttctatta	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7326046	T	T	7326046	3	4	9	1	0	0	0	0	1	0	0	0	14271	1357	47	2	2156	2	SFMBT2	10	7326046	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108020	7326046	128208701	10711	18862											
ITIH5	80760	broad.mit.edu	37	chr10	7679543	7679543	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccataccctctcaaccagccTgccagggagacccatgggtg	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7679543	A	A	7679543	1	1	9	0	1	0	0	0	0	0	0	0	7977	1595	55	5		5	ITIH5	10	7679543	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	353497	7679543	127855204	10712	18863											
ITIH2	3698	broad.mit.edu	37	chr10	7759491	7759491	+	Intron	SNP	G	T	T													catgaactactgagcagaacGgacggtccaggaaattctac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7759491	T	T	7759491	1	4	9	0	1	0	0	0	0	0	0	0	7974	1131	39	1		1	ITIH2	10	7759491	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	79948	7759491	127775256	10713	18864	123	2									
ITIH2	3698	broad.mit.edu	37	chr10	7759495	7759495	+	Intron	SNP	G	T	T													aactactgagcagaacggacGgtccaggaaattctacatgc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7759495	T	T	7759495	1	4	9	0	1	0	0	0	0	0	0	0	7974	1131	39	1		1	ITIH2	10	7759495	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	7759495	127775252	10714	18865	123	2									
ITIH2	3698	broad.mit.edu	37	chr10	7762869	7762869	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagatttcttcatgttccCgacacatttgaaggccattt	7	10	2	2	rs144114794		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7762869	A	A	7762869	2	1	9	1	0	0	0	0	0	0	0	1	7974	639	23	1		1	ITIH2	10	7762869	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3374	7762869	127771878	10715	18866											
ITIH2	3698	broad.mit.edu	37	chr10	7773737	7773737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagatctacaaagcagtaGgaacataatttctctctctc	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7773737	T	T	7773737	1	4	9	0	1	0	0	0	0	0	0	0	7974	1015	35	2		2	ITIH2	10	7773737	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10868	7773737	127761010	10716	18867											
KIN	22944	broad.mit.edu	37	chr10	7816841	7816841	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagctacatgctcctttactCaaattaaacgtgactagaag	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7816841	A	A	7816841	3	1	9	1	0	0	0	0	1	0	0	0	8386	825	29	3	588	3	KIN	10	7816841	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43104	7816841	127717906	10717	18868											
KIN	22944	broad.mit.edu	37	chr10	7820781	7820781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctggacgttgcttctcaGgatgatgttgcttacccacc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7820781	T	T	7820781	1	4	9	0	1	0	0	0	0	0	0	0	8386	1015	35	2		2	KIN	10	7820781	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3940	7820781	127713966	10718	18869											
KIN	22944	broad.mit.edu	37	chr10	7820922	7820922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgccggcggatagtttctGggtccctgtctatgtactga	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7820922	T	T	7820922	3	4	9	1	0	0	0	0	1	0	0	0	8386	1348	47	2	780	2	KIN	10	7820922	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	141	7820922	127713825	10719	18870											
TAF3	83860	broad.mit.edu	37	chr10	7866303	7866303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgaacagacccaattttGgatgatgttggtgaagcttt	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7866303	T	T	7866303	3	4	9	1	0	0	0	0	1	0	0	0	15644	1339	47	2	195	2	TAF3	10	7866303	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45381	7866303	127668444	10720	18871											
TAF3	83860	broad.mit.edu	37	chr10	8050983	8050983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatcatgtttttaagcacGggtttggttcgatgatgatc	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8050983	T	T	8050983	1	4	9	0	1	0	0	0	0	0	0	0	15644	1131	39	1		1	TAF3	10	8050983	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	184680	8050983	127483764	10721	18872											
CELF2	10659	broad.mit.edu	37	chr10	11047419	11047419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggtatgttgttgtgtcCtttgtttttaatgcacgctt	9	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11047419	A	A	11047419	1	1	9	0	1	0	0	0	0	0	0	0	3246	696	24	2		2	CELF2	10	11047419	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2996436	11047419	124487328	10722	18873											
CELF2	10659	broad.mit.edu	37	chr10	11207431	11207431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgccctaactctggctccCggttccgtttttgacagtaa	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11207431	A	A	11207431	1	1	9	0	1	0	0	0	0	0	0	0	3246	667	23	1		1	CELF2	10	11207431	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	160012	11207431	124327316	10723	18874											
USP6NL	9712	broad.mit.edu	37	chr10	11505458	11505458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagctgagacgtctgacGgtttattccatttgggcaca	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11505458	T	T	11505458	3	4	9	1	0	0	0	0	1	0	0	0	17214	1116	39	1	1021	1	USP6NL	10	11505458	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	298027	11505458	124029289	10724	18875											
USP6NL	9712	broad.mit.edu	37	chr10	11505472	11505472	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgacggtttattccatttGggcacaaactccttcctgat	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11505472	T	T	11505472	2	4	9	1	0	0	0	0	0	0	0	1	17214	1335	47	2		2	USP6NL	10	11505472	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	11505472	124029275	10725	18876											
USP6NL	9712	broad.mit.edu	37	chr10	11567463	11567463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcaatctctgcaccttctCgtccctaaaataaggcacaa	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11567463	A	A	11567463	3	1	9	1	0	0	0	0	1	0	0	0	17214	884	31	3	2457	3	USP6NL	10	11567463	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61991	11567463	123967284	10726	18877											
UPF2	26019	broad.mit.edu	37	chr10	12001176	12001176	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataagatttaccttctcGgtggtaaccttagagagatc	8	8	2	3	rs141632405		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12001176	T	T	12001176	2	4	9	1	0	0	0	0	0	0	0	1	17130	1103	39	1		1	UPF2	10	12001176	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	433713	12001176	123533571	10727	18878											
UPF2	26019	broad.mit.edu	37	chr10	12001270	12001270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttttttcagctggaggtGggttgcagtagtaatatgca	14	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12001270	T	T	12001270	3	4	9	1	0	0	0	0	1	0	0	0	17130	1348	47	2	1592	2	UPF2	10	12001270	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	94	12001270	123533477	10728	18879											
UPF2	26019	broad.mit.edu	37	chr10	12005933	12005933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaataagataaccagcactGgtcaatattttcaacctctg	6	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12005933	T	T	12005933	1	4	9	0	1	0	0	0	0	0	0	0	17130	1363	47	2		2	UPF2	10	12005933	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4663	12005933	123528814	10729	18880											
UPF2	26019	broad.mit.edu	37	chr10	12039698	12039698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaactatgaagagtgccCgtaccaacttcttcctgttt	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12039698	A	A	12039698	3	1	9	1	0	0	0	0	1	0	0	0	17130	652	23	1	2061	1	UPF2	10	12039698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33765	12039698	123495049	10730	18881											
DHTKD1	55526	broad.mit.edu	37	chr10	12155062	12155062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagatgttactcaggctccCggtaagcagaaggtggtgaa	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12155062	A	A	12155062	3	1	9	1	0	0	0	0	1	0	0	0	4540	666	23	1	2368	1	DHTKD1	10	12155062	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115364	12155062	123379685	10731	18882											
DHTKD1	55526	broad.mit.edu	37	chr10	12162220	12162220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacctcagaacatgggtcCgtggtcgtttgtttctccaa	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12162220	A	A	12162220	3	1	9	1	0	0	0	0	1	0	0	0	4540	652	23	1	2674	1	DHTKD1	10	12162220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7158	12162220	123372527	10732	18883											
NUDT5	11164	broad.mit.edu	37	chr10	12215730	12215730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccaacctggagaacattcGgcaatgtcccctttgtagcc	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12215730	T	T	12215730	2	4	9	1	0	0	0	0	0	0	0	1	10837	1103	39	1		1	NUDT5	10	12215730	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53510	12215730	123319017	10733	18884											
NUDT5	11164	broad.mit.edu	37	chr10	12215822	12215822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctatgagacctgcaagtcCaaatcattggtgtgatggga	11	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12215822	A	A	12215822	1	1	9	0	1	0	0	0	0	0	0	0	10837	609	21	2		2	NUDT5	10	12215822	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	12215822	123318925	10734	18885											
CDC123	8872	broad.mit.edu	37	chr10	12238291	12238291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttctccgcgtggtaccCgttcttccgaggcgttacca	10	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12238291	A	A	12238291	3	1	9	1	0	0	0	0	1	0	0	0	3085	652	23	1	49	1	CDC123	10	12238291	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22469	12238291	123296456	10735	18886											
CDC123	8872	broad.mit.edu	37	chr10	12240746	12240746	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgtgaaggattatttactCgatgatggaactctggtggt	12	4	1	2	rs11555899		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12240746	A	A	12240746	2	1	9	1	0	0	0	0	0	0	0	1	3085	871	31	3		3	CDC123	10	12240746	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2455	12240746	123294001	10736	18887											
CAMK1D	57118	broad.mit.edu	37	chr10	12595155	12595155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactcaaacttcggtggtaGggtgaatggagccattgtga	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12595155	T	T	12595155	1	4	9	0	1	0	0	0	0	0	0	0	2623	1015	35	2		2	CAMK1D	10	12595155	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	354409	12595155	122939592	10737	18888											
CAMK1D	57118	broad.mit.edu	37	chr10	12595236	12595236	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcacagcggggccttttcCgaagtggttttagctgaaga	13	8	1	2	rs141516444		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12595236	A	A	12595236	2	1	9	1	0	0	0	0	0	0	0	1	2623	639	23	1		1	CAMK1D	10	12595236	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	12595236	122939511	10738	18889											
CAMK1D	57118	broad.mit.edu	37	chr10	12803023	12803023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgccagcactctgatcCgccaagtcttggacgccgtg	12	13	2	1	rs143417427	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12803023	A	A	12803023	3	1	9	1	0	0	0	0	1	0	0	0	2623	652	23	1	390	1	CAMK1D	10	12803023	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	207787	12803023	122731724	10739	18890											
CAMK1D	57118	broad.mit.edu	37	chr10	12833269	12833269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgggttcttcctctacCggcctttttttgtttggtga	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12833269	A	A	12833269	1	1	9	0	1	0	0	0	0	0	0	0	2623	667	23	1		1	CAMK1D	10	12833269	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30246	12833269	122701478	10740	18891											
OPTN	10133	broad.mit.edu	37	chr10	13175590	13175590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcaaagaggtgagtccCgtgtgatcctggattttcag	12	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13175590	A	A	13175590	1	1	9	0	1	0	0	0	0	0	0	0	10983	667	23	1		1	OPTN	10	13175590	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	342321	13175590	122359157	10741	18892											
MCM10	55388	broad.mit.edu	37	chr10	13201629	13201629	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccctttcctggaaaatcGgcttaatttgcccacgatag	8	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13201629	T	T	13201629	1	4	9	0	1	0	0	0	0	0	0	0	9478	1131	39	1		1	MCM10	10	13201629	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	26039	13201629	122333118	10742	18893											
MCM10	55388	broad.mit.edu	37	chr10	13213031	13213031	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcgggaaaatggcgagccCgacgcatttgatgagctctt	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13213031	A	A	13213031	2	1	9	1	0	0	0	0	0	0	0	1	9478	639	23	1		1	MCM10	10	13213031	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11402	13213031	122321716	10743	18894											
MCM10	55388	broad.mit.edu	37	chr10	13240685	13240685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtttgttccttgtgccCtagctgaggatgaattggag	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13240685	A	A	13240685	1	1	9	0	1	0	0	0	0	0	0	0	9478	696	24	2		2	MCM10	10	13240685	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	27654	13240685	122294062	10744	18895											
UCMA	221044	broad.mit.edu	37	chr10	13264049	13264049	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaagattgctggaacacGgggatgccaatggtgctaca	15	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13264049	T	T	13264049	1	4	9	0	1	0	0	0	0	0	0	0	17052	1131	39	1		1	UCMA	10	13264049	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	23364	13264049	122270698	10745	18896											
PHYH	5264	broad.mit.edu	37	chr10	13325784	13325785	+	Missense_Mutation	DNP	CG	AT	AT													tctccatcaccaggtgcaccCgggccttgttttcctcgtag					rs62619919	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	13325785	AT	AT	13325784	3	1	9	1	0	0	0	0	1	0	0	0	11959	652	23	1	294	1	PHYH	10	13325784	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	61735	13325784	122208963	10746	18897											
SEPHS1	22929	broad.mit.edu	37	chr10	13361258	13361258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcccttctctacaatccCaataatccatgcttggtggc	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13361258	A	A	13361258	3	1	9	1	0	0	0	0	1	0	0	0	14167	594	21	2	119	2	SEPHS1	10	13361258	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35474	13361258	122173489	10747	18898											
SEPHS1	22929	broad.mit.edu	37	chr10	13386747	13386747	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccatcaaagaaacactGggttacctaccaagccttgg	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13386747	T	T	13386747	1	4	9	0	1	0	0	0	0	0	0	0	14167	1363	47	2		2	SEPHS1	10	13386747	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25489	13386747	122148000	10748	18899											
SEPHS1	22929	broad.mit.edu	37	chr10	13386758	13386758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacactgggttacctacCaagccttggcataacggctc	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13386758	A	A	13386758	3	1	9	1	0	0	0	0	1	0	0	0	14167	608	21	2	1017	2	SEPHS1	10	13386758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	13386758	122147989	10749	18900											
SEPHS1	22929	broad.mit.edu	37	chr10	13386925	13386925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaattcgtaactttccGggttaaaggactcccgcgta	9	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13386925	T	T	13386925	3	4	9	1	0	0	0	0	1	0	0	0	14167	1116	39	1	1184	1	SEPHS1	10	13386925	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	167	13386925	122147822	10750	18901											
PRPF18	8559	broad.mit.edu	37	chr10	13647776	13647776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaaagctagaaaaatacCactgtactgcattcactaga	6	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13647776	A	A	13647776	1	1	9	0	1	0	0	0	0	0	0	0	12669	609	21	2		2	PRPF18	10	13647776	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	260851	13647776	121886971	10751	18902											
FRMD4A	55691	broad.mit.edu	37	chr10	13693898	13693898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaacaaaactccccttacGgtacctctattcatcagtac	5	13	3	0	rs61754562		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13693898	T	T	13693898	1	4	9	0	1	0	0	0	0	0	0	0	6111	1131	39	1		1	FRMD4A	10	13693898	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46122	13693898	121840849	10752	18903											
FRMD4A	55691	broad.mit.edu	37	chr10	13702587	13702587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagaggaactgagcccCggtcatccttcccacaggct	12	13	1	2	rs75598361	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13702587	A	A	13702587	1	1	9	0	1	0	0	0	0	0	0	0	6111	667	23	1		1	FRMD4A	10	13702587	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8689	13702587	121832160	10753	18904											
CDNF	441549	broad.mit.edu	37	chr10	14867463	14867463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctactgggaaaaacacGgggctgtgttataccatatt	11	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14867463	T	T	14867463	1	4	9	0	1	0	0	0	0	0	0	0	3198	1131	39	1		1	CDNF	10	14867463	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1164876	14867463	120667284	10754	18905											
HSPA14	51182	broad.mit.edu	37	chr10	14891774	14891774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtagttattactgtccCgtttgattttggagaaaagc	10	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14891774	A	A	14891774	3	1	9	1	0	0	0	0	1	0	0	0	7476	652	23	1	453	1	HSPA14	10	14891774	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24311	14891774	120642973	10755	18906											
HSPA14	51182	broad.mit.edu	37	chr10	14894475	14894475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacactgatgataacatcGgtggtgcacatttcacagaa	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14894475	T	T	14894475	3	4	9	1	0	0	0	0	1	0	0	0	7476	1116	39	1	709	1	HSPA14	10	14894475	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2701	14894475	120640272	10756	18907											
SUV39H2	79723	broad.mit.edu	37	chr10	14938927	14938927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaaaatctgaagtgccCgttactgcttcagcaattct	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14938927	A	A	14938927	3	1	9	1	0	0	0	0	1	0	0	0	15531	652	23	1	82	1	SUV39H2	10	14938927	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44452	14938927	120595820	10757	18908											
DCLRE1C	64421	broad.mit.edu	37	chr10	14976374	14976374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaagaatgaacagtcacCatacctggactcctaattct	6	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14976374	A	A	14976374	1	1	9	0	1	0	0	0	0	0	0	0	4329	609	21	2		2	DCLRE1C	10	14976374	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	37447	14976374	120558373	10758	18909			16	19		6	6	330	N	G_C	1.762341e-06
DCLRE1C	64421	broad.mit.edu	37	chr10	14976471	14976471	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacaacatggtacgggctccGagtgatccagcttcggacca	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14976471	T	T	14976471	2	4	9	1	0	0	0	0	0	0	0	1	4329	1057	37	3		3	DCLRE1C	10	14976471	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	97	14976471	120558276	10759	18910			16	19		6	6	330	N	G_C	1.762341e-06
DCLRE1C	64421	broad.mit.edu	37	chr10	14976486	14976486	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccgagtgatccagcttcGgaccagctctaagactccac	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14976486	T	T	14976486	2	4	9	1	0	0	0	0	0	0	0	1	4329	1124	39	1		1	DCLRE1C	10	14976486	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	14976486	120558261	10760	18911			16	19		6	6	330	N	G_C	1.762341e-06
DCLRE1C	64421	broad.mit.edu	37	chr10	14976607	14976607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggtactcacacctacGgggacagttaggatatgacc	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14976607	T	T	14976607	1	4	9	0	1	0	0	0	0	0	0	0	4329	1131	39	1		1	DCLRE1C	10	14976607	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	121	14976607	120558140	10761	18912			16	19		6	6	330	N	G_C	1.762341e-06
DCLRE1C	64421	broad.mit.edu	37	chr10	14976659	14976659	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacttcctactaaaaacacGggcacacccagatgataacc	5	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14976659	C	C	14976659	1	2	9	0	1	0	0	0	0	0	0	0	4329	1131	39	4		4	DCLRE1C	10	14976659	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	14976659	120558088	10762	18913			16	19		6	6	330	N	G_C	1.762341e-06
DCLRE1C	64421	broad.mit.edu	37	chr10	14976703	14976703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctccaggcagacttaccCgacttggaatttggtaaaat	8	10	0	1	rs150854849		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14976703	A	A	14976703	3	1	9	1	0	0	0	0	1	0	0	0	4329	666	23	1	1574	1	DCLRE1C	10	14976703	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	14976703	120558044	10763	18914			16	19		6	6	330	N	G_C	1.762341e-06
OLAH	55301	broad.mit.edu	37	chr10	15103735	15103735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccagtgcactccttaaGgcttcctggaagagaaagca	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15103735	T	T	15103735	3	4	9	1	0	0	0	0	1	0	0	0	10946	1000	35	2	349	2	OLAH	10	15103735	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127032	15103735	120431012	10764	18915											
OLAH	55301	broad.mit.edu	37	chr10	15107714	15107714	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgaaacaatgtagtccCatcataagggcagatctgaa	9	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15107714	A	A	15107714	2	1	9	1	0	0	0	0	0	0	0	1	10946	581	21	2		2	OLAH	10	15107714	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3979	15107714	120427033	10765	18916											
NMT2	9397	broad.mit.edu	37	chr10	15172176	15172176	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcttaggaagaaccactccCgcggtgtacacagcctggaa	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15172176	G	G	15172176	2	3	9	1	0	0	0	0	0	0	0	1	10599	639	23	4		4	NMT2	10	15172176	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64462	15172176	120362571	10766	18917											
NMT2	9397	broad.mit.edu	37	chr10	15174859	15174859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggatggcacttatgaaccCgaccagttttttatttgaag	10	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15174859	A	A	15174859	3	1	9	1	0	0	0	0	1	0	0	0	10599	652	23	1	848	1	NMT2	10	15174859	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2683	15174859	120359888	10767	18918											
FAM171A1	221061	broad.mit.edu	37	chr10	15255287	15255287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgctcttggacgggcGggtagttctgctgcagagac	17	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15255287	T	T	15255287	3	4	9	1	0	0	0	0	1	0	0	0	5535	1116	39	1	376	1	FAM171A1	10	15255287	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80428	15255287	120279460	10768	18919											
ITGA8	8516	broad.mit.edu	37	chr10	15561330	15561330	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcgagaaccaacaatcCaagaagtattgctagtatta	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15561330	A	A	15561330	4	1	9	1	0	0	0	0	0	1	0	0	7952	603	21	2	135	2	ITGA8	10	15561330	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	306043	15561330	119973417	10769	18920											
ITGA8	8516	broad.mit.edu	37	chr10	15561383	15561383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattgagaaggaaacattcGgagttgcccaaataactgat	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15561383	T	T	15561383	3	4	9	1	0	0	0	0	1	0	0	0	7952	1116	39	1	188	1	ITGA8	10	15561383	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53	15561383	119973364	10770	18921											
ITGA8	8516	broad.mit.edu	37	chr10	15561480	15561480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaataaaatagtaattacCagtacaacatcggaagttga	7	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15561480	A	A	15561480	1	1	9	0	1	0	0	0	0	0	0	0	7952	609	21	2		2	ITGA8	10	15561480	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	97	15561480	119973267	10771	18922											
ITGA8	8516	broad.mit.edu	37	chr10	15600061	15600061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcagttctatgcacactGggataactcaccagtatttt	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15600061	T	T	15600061	1	4	9	0	1	0	0	0	0	0	0	0	7952	1363	47	2		2	ITGA8	10	15600061	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38581	15600061	119934686	10772	18923											
ITGA8	8516	broad.mit.edu	37	chr10	15649602	15649602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatgcagacaaacatgatGgttaaatggagaaaaatggt	10	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15649602	T	T	15649602	1	4	9	0	1	0	0	0	0	0	0	0	7952	1363	47	2		2	ITGA8	10	15649602	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49541	15649602	119885145	10773	18924											
ITGA8	8516	broad.mit.edu	37	chr10	15649677	15649677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctttctggaatacttactCgaaggtaaacgatgaaatcc	8	8	2	1	rs117792487	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15649677	A	A	15649677	3	1	9	1	0	0	0	0	1	0	0	0	7952	898	31	3	1484	3	ITGA8	10	15649677	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	15649677	119885070	10774	18925											
ITGA8	8516	broad.mit.edu	37	chr10	15650363	15650363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccttcctttacctaatcCcagataacgaatatcatttt	3	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15650363	A	A	15650363	1	1	9	0	1	0	0	0	0	0	0	0	7952	638	22	2		2	ITGA8	10	15650363	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	686	15650363	119884384	10775	18926											
FAM188A	80013	broad.mit.edu	37	chr10	15885239	15885239	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgccaagaagacttctcCgaagaaaacaggagcttctt	8	12	2	3	rs140140984		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15885239	A	A	15885239	2	1	9	1	0	0	0	0	0	0	0	1	5560	639	23	1		1	FAM188A	10	15885239	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	234876	15885239	119649508	10776	18927											
PTER	9317	broad.mit.edu	37	chr10	16528530	16528530	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttattatccatcctggacgGagctccagggcaccatttca	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16528530	A	A	16528530	2	1	9	1	0	0	0	0	0	0	0	1	12845	1161	41	4		4	PTER	10	16528530	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	643291	16528530	119006217	10777	18928											
C1QL3	389941	broad.mit.edu	37	chr10	16556595	16556595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcctccatgggctttccCgccatctaatttgatataga	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16556595	A	A	16556595	3	1	9	1	0	0	0	0	1	0	0	0	1980	652	23	1	71	1	C1QL3	10	16556595	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28065	16556595	118978152	10778	18929											
RSU1	6251	broad.mit.edu	37	chr10	16794607	16794607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagctgggtaagctcccCgatttccttaggcagcgaga	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16794607	A	A	16794607	3	1	9	1	0	0	0	0	1	0	0	0	13827	652	23	1	316	1	RSU1	10	16794607	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	238012	16794607	118740140	10779	18930											
RSU1	6251	broad.mit.edu	37	chr10	16859043	16859043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgggctggttcttctccCggctctcctccaccaacttc	7	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16859043	A	A	16859043	3	1	9	1	0	0	0	0	1	0	0	0	13827	652	23	1	827	1	RSU1	10	16859043	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64436	16859043	118675704	10780	18931											
CUBN	8029	broad.mit.edu	37	chr10	16911699	16911699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaatctgtcttgaacacCaggagcatactattattgct	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16911699	A	A	16911699	2	1	9	1	0	0	0	0	0	0	0	1	4084	581	21	2		2	CUBN	10	16911699	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52656	16911699	118623048	10781	18932											
CUBN	8029	broad.mit.edu	37	chr10	16948289	16948289	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaaatggatgaatttcCctgatttggattgctgagag	12	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16948289	A	A	16948289	4	1	9	1	0	0	0	0	0	1	0	0	4084	632	22	2	3118	2	CUBN	10	16948289	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36590	16948289	118586458	10782	18933											
CUBN	8029	broad.mit.edu	37	chr10	16949648	16949648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacacagtttctctagctGgggtgagttacttctaatgc	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16949648	T	T	16949648	3	4	9	1	0	0	0	0	1	0	0	0	4084	1357	47	2	3383	2	CUBN	10	16949648	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1359	16949648	118585099	10783	18934											
CUBN	8029	broad.mit.edu	37	chr10	16955877	16955877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaaacattagggtgatcCgccttccctccggggcagtg	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16955877	A	A	16955877	3	1	9	1	0	0	0	0	1	0	0	0	4084	652	23	1	3485	1	CUBN	10	16955877	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6229	16955877	118578870	10784	18935											
CUBN	8029	broad.mit.edu	37	chr10	16960655	16960655	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgaatcccacatgtgtGgggctgttgtcagatcgaaa	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16960655	T	T	16960655	2	4	9	1	0	0	0	0	0	0	0	1	4084	1335	47	2		2	CUBN	10	16960655	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4778	16960655	118574092	10785	18936											
CUBN	8029	broad.mit.edu	37	chr10	16982056	16982056	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaatgtggcctggaagccCgtgccgctgccagaaccatc	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16982056	A	A	16982056	2	1	9	1	0	0	0	0	0	0	0	1	4084	639	23	1		1	CUBN	10	16982056	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21401	16982056	118552691	10786	18937											
CUBN	8029	broad.mit.edu	37	chr10	17061832	17061832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcagcacctggcttacCgtaaacaaaccactgcatct	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17061832	A	A	17061832	3	1	9	1	0	0	0	0	1	0	0	0	4084	666	23	1	6863	1	CUBN	10	17061832	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79776	17061832	118472915	10787	18938											
CUBN	8029	broad.mit.edu	37	chr10	17087158	17087158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgggagatatgaacgtgcCgcttgaagtggtgagattac	15	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17087158	A	A	17087158	3	1	9	1	0	0	0	0	1	0	0	0	4084	652	23	1	7523	1	CUBN	10	17087158	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25326	17087158	118447589	10788	18939											
CUBN	8029	broad.mit.edu	37	chr10	17107630	17107630	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggcgggatcgactttcCacagtatctattccaaacca	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17107630	A	A	17107630	4	1	9	1	0	0	0	0	0	1	0	0	4084	603	21	2	8039	2	CUBN	10	17107630	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20472	17107630	118427117	10789	18940											
CUBN	8029	broad.mit.edu	37	chr10	17127722	17127722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtggtgcagaacttccCaagaagggggtcctgataca	13	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17127722	A	A	17127722	3	1	9	1	0	0	0	0	1	0	0	0	4084	594	21	2	9095	2	CUBN	10	17127722	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20092	17127722	118407025	10790	18941											
CUBN	8029	broad.mit.edu	37	chr10	17142043	17142043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttactgtaaagcctctccCatttcttaaatgttcagaat	4	10	4	1	rs34033621		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17142043	A	A	17142043	3	1	9	1	0	0	0	0	1	0	0	0	4084	594	21	2	9361	2	CUBN	10	17142043	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14321	17142043	118392704	10791	18942											
CUBN	8029	broad.mit.edu	37	chr10	17147546	17147546	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccatttccagtataaccCgggagacacgtgcagagagg	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17147546	A	A	17147546	2	1	9	1	0	0	0	0	0	0	0	1	4084	639	23	1		1	CUBN	10	17147546	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5503	17147546	118387201	10792	18943											
CUBN	8029	broad.mit.edu	37	chr10	17171582	17171582	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtttatctggctatttGggaaaactggtgaggaatta	11	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17171582	T	T	17171582	1	4	9	0	1	0	0	0	0	0	0	0	4084	1363	47	2		2	CUBN	10	17171582	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24036	17171582	118363165	10793	18944											
ST8SIA6	338596	broad.mit.edu	37	chr10	17432586	17432586	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagatttttgcatttctcCgtcagttggagcgacttctc	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17432586	A	A	17432586	2	1	9	1	0	0	0	0	0	0	0	1	15354	639	23	1		1	ST8SIA6	10	17432586	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	261004	17432586	118102161	10794	18945											
PTPLA	9200	broad.mit.edu	37	chr10	17636294	17636294	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcttattgaaaacattcCtgttttcttcacatgcggca	6	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17636294	A	A	17636294	4	1	9	1	0	0	0	0	0	1	0	0	12880	690	24	2	180	2	PTPLA	10	17636294	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	203708	17636294	117898453	10795	18946											
STAM	8027	broad.mit.edu	37	chr10	17750860	17750860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagctacagtcttccccCggagcagctgtcttctctca	8	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17750860	A	A	17750860	3	1	9	1	0	0	0	0	1	0	0	0	15366	652	23	1	1345	1	STAM	10	17750860	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114566	17750860	117783887	10796	18947											
MRC1	4360	broad.mit.edu	37	chr10	17949622	17949622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagatccctctggtgaacGgaatgattgtgtagctttac	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17949622	T	T	17949622	3	4	9	1	0	0	0	0	1	0	0	0	9850	1116	39	1	4096	1	MRC1	10	17949622	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	198762	17949622	117585125	10797	18948											
CACNB2	783	broad.mit.edu	37	chr10	18439939	18439939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatggttttgataagtacCttaaaatgactttagatttt	6	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18439939	A	A	18439939	1	1	9	0	1	0	0	0	0	0	0	0	2579	696	24	2		2	CACNB2	10	18439939	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	490317	18439939	117094808	10798	18949											
CACNB2	783	broad.mit.edu	37	chr10	18550878	18550878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcactacttaacatgattGgatgctaattgcaatatgct	6	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18550878	T	T	18550878	1	4	9	0	1	0	0	0	0	0	0	0	2579	1363	47	2		2	CACNB2	10	18550878	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	110939	18550878	116983869	10799	18950											
CACNB2	783	broad.mit.edu	37	chr10	18629917	18629917	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcctggggtaagcatacGggagagaagccggccagatg	15	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18629917	T	T	18629917	1	4	9	0	1	0	0	0	0	0	0	0	2579	1131	39	1		1	CACNB2	10	18629917	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	79039	18629917	116904830	10800	18951											
CACNB2	783	broad.mit.edu	37	chr10	18816564	18816564	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catctcgcttgccaaacgctCggtattaaacaatcccagta	6	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18816564	A	A	18816564	4	1	9	1	0	0	0	0	0	1	0	0	2579	893	31	3	1340	3	CACNB2	10	18816564	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	186647	18816564	116718183	10801	18952											
CACNB2	783	broad.mit.edu	37	chr10	18828158	18828158	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgctcctttcgctgccaGggttctcaaggtgatcagag	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18828158	T	T	18828158	5	4	9	1	0	0	0	0	0	0	1	0	2579	1014	35	2	1852	2	CACNB2	10	18828158	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	11594	18828158	116706589	10802	18953											
CACNB2	783	broad.mit.edu	37	chr10	18828191	18828191	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcagaggactgatcgctcCgctcctatccgttctgcttc	9	14	2	2	rs143060134	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18828191	A	A	18828191	2	1	9	1	0	0	0	0	0	0	0	1	2579	639	23	1		1	CACNB2	10	18828191	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	18828191	116706556	10803	18954											
PLXDC2	84898	broad.mit.edu	37	chr10	20335882	20335882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatgggtgaacatagacCaaatggaaaaagataaagtg	10	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20335882	A	A	20335882	3	1	9	1	0	0	0	0	1	0	0	0	12213	595	21	2	419	2	PLXDC2	10	20335882	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1507691	20335882	115198865	10804	18955											
PLXDC2	84898	broad.mit.edu	37	chr10	20466285	20466285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtttaacagatgtggcccCtgtgtatcttctcagattgg	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20466285	A	A	20466285	2	1	9	1	0	0	0	0	0	0	0	1	12213	668	24	2		2	PLXDC2	10	20466285	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	130403	20466285	115068462	10805	18956											
NEBL	10529	broad.mit.edu	37	chr10	21108396	21108396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcactctctctatctccGgggtcatgcttaccggagtg	10	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21108396	T	T	21108396	3	4	9	1	0	0	0	0	1	0	0	0	10398	1116	39	1	1068	1	NEBL	10	21108396	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	642111	21108396	114426351	10806	18957											
NEBL	10529	broad.mit.edu	37	chr10	21115407	21115407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgctgatttttcttcactCgttcgatctctgggctatct	7	11	5	1	rs151035799	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21115407	A	A	21115407	3	1	9	1	0	0	0	0	1	0	0	0	10398	884	31	3	1250	3	NEBL	10	21115407	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7011	21115407	114419340	10807	18958											
NEBL	10529	broad.mit.edu	37	chr10	21157653	21157653	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtcttccaattacagcGggctctttattcattattcc	6	11	4	0	rs111854914	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21157653	T	T	21157653	2	4	9	1	0	0	0	0	0	0	0	1	10398	1103	39	1		1	NEBL	10	21157653	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	42246	21157653	114377094	10808	18959											
C10orf140	387640	broad.mit.edu	37	chr10	21804530	21804530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggagtttctttttcaGggcatgcaaaaccttccttg	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21804530	T	T	21804530	3	4	9	1	0	0	0	0	1	0	0	0	1606	1000	35	2	508	2	C10orf140	10	21804530	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	646877	21804530	113730217	10809	18960											
C10orf140	387640	broad.mit.edu	37	chr10	21804624	21804624	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accctttgtatcattgcactCgcactttagcttatttgtaa	5	10	1	0	rs35145063		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21804624	A	A	21804624	4	1	9	1	0	0	0	0	0	1	0	0	1606	893	31	3	602	3	C10orf140	10	21804624	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	21804624	113730123	10810	18961											
MLLT10	8028	broad.mit.edu	37	chr10	21962475	21962475	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtaaatagttttagtacCttaattggcctcccttcaac	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21962475	A	A	21962475	2	1	9	1	0	0	0	0	0	0	0	1	9719	668	24	2		2	MLLT10	10	21962475	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	157851	21962475	113572272	10811	18962											
MLLT10	8028	broad.mit.edu	37	chr10	22021940	22021940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagttattgaatgcacaGctttcagtgccttttccaac	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22021940	T	T	22021940	3	4	9	1	0	0	0	0	1	0	0	0	9719	962	34	3	2449	3	MLLT10	10	22021940	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59465	22021940	113512807	10812	18963											
MLLT10	8028	broad.mit.edu	37	chr10	22029122	22029122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacagctaccaccaaccCatttctcaccatccatggag	4	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22029122	A	A	22029122	3	1	9	1	0	0	0	0	1	0	0	0	9719	594	21	2	3129	2	MLLT10	10	22029122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7182	22029122	113505625	10813	18964											
DNAJC1	64215	broad.mit.edu	37	chr10	22048112	22048112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcaccttgctcttggacGggacacatctggctattttg	9	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22048112	T	T	22048112	3	4	9	1	0	0	0	0	1	0	0	0	4668	1116	39	1	89	1	DNAJC1	10	22048112	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18990	22048112	113486635	10814	18965											
DNAJC1	64215	broad.mit.edu	37	chr10	22048249	22048249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttttctcaggctctcCtcgtcgctggactcgttttg	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22048249	A	A	22048249	3	1	9	1	0	0	0	0	1	0	0	0	4668	680	24	2	226	2	DNAJC1	10	22048249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	137	22048249	113486498	10815	18966											
DNAJC1	64215	broad.mit.edu	37	chr10	22094927	22094927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctgtcacagatcgaccCaattcgtgggcaatcttttc	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22094927	A	A	22094927	3	1	9	1	0	0	0	0	1	0	0	0	4668	593	21	2	600	2	DNAJC1	10	22094927	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46678	22094927	113439820	10816	18967											
BMI1	648	broad.mit.edu	37	chr10	22616540	22616540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtcagataaaactctcCaagatattgtatacaaatta	5	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22616540	A	A	22616540	3	1	9	1	0	0	0	0	1	0	0	0	1461	595	21	2	236	2	BMI1	10	22616540	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	521613	22616540	112918207	10817	18968											
SPAG6	9576	broad.mit.edu	37	chr10	22700091	22700091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtattaacagttgttacccCgaggaaatagtgaggtgggg	14	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22700091	A	A	22700091	2	1	9	1	0	0	0	0	0	0	0	1	15098	639	23	1		1	SPAG6	10	22700091	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	83551	22700091	112834656	10818	18969											
PIP4K2A	5305	broad.mit.edu	37	chr10	22896890	22896890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaattccaaacctctccCgcaggttacggaagaccatc	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22896890	A	A	22896890	3	1	9	1	0	0	0	0	1	0	0	0	12031	652	23	1	947	1	PIP4K2A	10	22896890	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	196799	22896890	112637857	10819	18970											
ARMC3	219681	broad.mit.edu	37	chr10	23295821	23295821	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatctcacagataaatccCggcaccaaactgttgccttt	5	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23295821	A	A	23295821	2	1	9	1	0	0	0	0	0	0	0	1	956	639	23	1		1	ARMC3	10	23295821	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	398931	23295821	112238926	10820	18971											
KIAA1217	56243	broad.mit.edu	37	chr10	24508701	24508701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacaccctaggggggcccCgaagttccaaggaaatactg	12	12	0	0	rs138853775		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24508701	A	A	24508701	2	1	9	1	0	0	0	0	0	0	0	1	8286	644	23	1		1	KIAA1217	10	24508701	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1212880	24508701	111026046	10821	18972											
KIAA1217	56243	broad.mit.edu	37	chr10	24834018	24834018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccaaactgcaggatcccCgccaatatcgtcaggtagtt	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24834018	A	A	24834018	3	1	9	1	0	0	0	0	1	0	0	0	8286	652	23	1	5398	1	KIAA1217	10	24834018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	325317	24834018	110700729	10822	18973											
ARHGAP21	57584	broad.mit.edu	37	chr10	24873290	24873290	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatattgacagagttactGgaacgtgtaacagtagtttt	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24873290	T	T	24873290	1	4	9	0	1	0	0	0	0	0	0	0	873	1363	47	2		2	ARHGAP21	10	24873290	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	39272	24873290	110661457	10823	18974											
ARHGAP21	57584	broad.mit.edu	37	chr10	24874877	24874877	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcattgtgacactgttcCacattttctttcttaaaaaa	4	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24874877	A	A	24874877	2	1	9	1	0	0	0	0	0	0	0	1	873	581	21	2		2	ARHGAP21	10	24874877	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1587	24874877	110659870	10824	18975											
ARHGAP21	57584	broad.mit.edu	37	chr10	24886863	24886863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattaactgcaggcaaggtGggattctcacctcatcagat	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24886863	T	T	24886863	1	4	9	0	1	0	0	0	0	0	0	0	873	1363	47	2		2	ARHGAP21	10	24886863	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11986	24886863	110647884	10825	18976											
ARHGAP21	57584	broad.mit.edu	37	chr10	24889858	24889858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgaatacttccaccaactCgctagaaaacatgcgacagt	7	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24889858	A	A	24889858	3	1	9	1	0	0	0	0	1	0	0	0	873	898	31	3	3079	3	ARHGAP21	10	24889858	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2995	24889858	110644889	10826	18977											
PRTFDC1	56952	broad.mit.edu	37	chr10	25160900	25160900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcccccagacctcaatgcGgtctgagcacagttacatga	9	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25160900	T	T	25160900	1	4	9	0	1	0	0	0	0	0	0	0	12743	1131	39	1		1	PRTFDC1	10	25160900	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	271042	25160900	110373847	10827	18978											
PRTFDC1	56952	broad.mit.edu	37	chr10	25231244	25231244	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaccaagattgacacaGgaaatcacactcacctgtcc	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25231244	T	T	25231244	1	4	9	0	1	0	0	0	0	0	0	0	12743	1015	35	2		2	PRTFDC1	10	25231244	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	70344	25231244	110303503	10828	18979											
ENKUR	219670	broad.mit.edu	37	chr10	25284594	25284594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttttattgatgtactttGgaactagtcctgaaggctca	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25284594	T	T	25284594	3	4	9	1	0	0	0	0	1	0	0	0	5162	1348	47	2	358	2	ENKUR	10	25284594	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53350	25284594	110250153	10829	18980											
THNSL1	79896	broad.mit.edu	37	chr10	25312970	25312970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcctgcaaaggagtttcCaaaattaagctgcggggagt	12	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25312970	A	A	25312970	3	1	9	1	0	0	0	0	1	0	0	0	15985	594	21	2	820	2	THNSL1	10	25312970	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28376	25312970	110221777	10830	18981											
GPR158	57512	broad.mit.edu	37	chr10	25888238	25888238	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggaaaaggagggaacccCggattggatatgagacagaa	15	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25888238	A	A	25888238	1	1	9	0	1	0	0	0	0	0	0	0	6728	667	23	1		1	GPR158	10	25888238	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	575268	25888238	109646509	10831	18982											
MYO3A	53904	broad.mit.edu	37	chr10	26414348	26414348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttctttgctttgcattcGggcagatgagctacaagaag	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26414348	T	T	26414348	3	4	9	1	0	0	0	0	1	0	0	0	10170	1116	39	1	1991	1	MYO3A	10	26414348	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	526110	26414348	109120399	10832	18983											
MYO3A	53904	broad.mit.edu	37	chr10	26446293	26446293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccaacctcattttgtcCgttgcatcaaaccaaatagt	7	11	2	0	rs78316055		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26446293	A	A	26446293	3	1	9	1	0	0	0	0	1	0	0	0	10170	652	23	1	2942	1	MYO3A	10	26446293	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31945	26446293	109088454	10833	18984											
MYO3A	53904	broad.mit.edu	37	chr10	26455080	26455080	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attttggaaaaagctggtctCgataactgggctcttggaaa	11	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26455080	A	A	26455080	2	1	9	1	0	0	0	0	0	0	0	1	10170	871	31	3		3	MYO3A	10	26455080	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8787	26455080	109079667	10834	18985											
APBB1IP	54518	broad.mit.edu	37	chr10	26825106	26825106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcgctattttcttttacGggcttctggaatttattatg	9	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26825106	T	T	26825106	3	4	9	1	0	0	0	0	1	0	0	0	762	1116	39	1	1034	1	APBB1IP	10	26825106	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	370026	26825106	108709641	10835	18986											
PDSS1	23590	broad.mit.edu	37	chr10	26993660	26993660	+	Missense_Mutation	SNP	C	A	A													ctgcctgtccaaatgtatgtCgtatatcacggtaagtttac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26993660	A	A	26993660	3	1	9	1	0	0	0	0	1	0	0	0	11787	884	31	3	227	3	PDSS1	10	26993660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168554	26993660	108541087	10836	18987	124	2									
PDSS1	23590	broad.mit.edu	37	chr10	26993670	26993670	+	Missense_Mutation	SNP	G	T	T													aaatgtatgtcgtatatcacGgtaagtttacagtccatact							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26993670	T	T	26993670	3	4	9	1	0	0	0	0	1	0	0	0	11787	1130	39	1	237	1	PDSS1	10	26993670	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	26993670	108541077	10837	18988	124	2									
PDSS1	23590	broad.mit.edu	37	chr10	26998606	26998606	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaacttaaggaaatgtctGagtactactttgatgggaaa	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26998606	T	T	26998606	4	4	9	1	0	0	0	0	0	1	0	0	11787	1291	45	3	394	3	PDSS1	10	26998606	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4936	26998606	108536141	10838	18989											
PDSS1	23590	broad.mit.edu	37	chr10	26998666	26998666	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattgtggcgctaatggccCgagcatgcaatattcatcat	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26998666	A	A	26998666	2	1	9	1	0	0	0	0	0	0	0	1	11787	644	23	1		1	PDSS1	10	26998666	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	26998666	108536081	10839	18990											
ABI1	10006	broad.mit.edu	37	chr10	27149710	27149710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcacagtagtctgccaccCgagtcaggttctggtaactc	9	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27149710	A	A	27149710	3	1	9	1	0	0	0	0	1	0	0	0	88	652	23	1	1546	1	ABI1	10	27149710	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151044	27149710	108385037	10840	18991											
ANKRD26	22852	broad.mit.edu	37	chr10	27301928	27301928	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactattattaagatttccCacacaaggtggctccatgac	6	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27301928	A	A	27301928	2	1	9	1	0	0	0	0	0	0	0	1	654	581	21	2		2	ANKRD26	10	27301928	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	152218	27301928	108232819	10841	18992											
YME1L1	10730	broad.mit.edu	37	chr10	27420861	27420861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaagccctgttgttgtcCggaagcggactaaagggaag	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27420861	A	A	27420861	3	1	9	1	0	0	0	0	1	0	0	0	17614	652	23	1	1413	1	YME1L1	10	27420861	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118933	27420861	108113886	10842	18993											
YME1L1	10730	broad.mit.edu	37	chr10	27437844	27437844	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaagacttacctcactgctGggagcctcatgctcaggaac	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27437844	C	C	27437844	2	2	9	1	0	0	0	0	0	0	0	1	17614	1335	47	4		4	YME1L1	10	27437844	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16983	27437844	108096903	10843	18994											
MASTL	84930	broad.mit.edu	37	chr10	27462118	27462118	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaagaggggtggccccCgttgatgatgggcgaattct	17	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462118	A	A	27462118	2	1	9	1	0	0	0	0	0	0	0	1	9420	639	23	1		1	MASTL	10	27462118	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24274	27462118	108072629	10844	18995											
MASTL	84930	broad.mit.edu	37	chr10	27469889	27469889	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcgattacaggtcctgcGgtagactggtgggcacttgg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27469889	T	T	27469889	2	4	9	1	0	0	0	0	0	0	0	1	9420	1103	39	1		1	MASTL	10	27469889	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7771	27469889	108064858	10845	18996											
PTCHD3	374308	broad.mit.edu	37	chr10	27692124	27692124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacacggtgtgcagcctccCgttttgttttactcacctag	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27692124	A	A	27692124	1	1	9	0	1	0	0	0	0	0	0	0	12840	667	23	1		1	PTCHD3	10	27692124	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	222235	27692124	107842623	10846	18997											
PTCHD3	374308	broad.mit.edu	37	chr10	27702024	27702024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttttgttacgattctgGggagcaagtcttcctcatcc	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27702024	T	T	27702024	1	4	9	0	1	0	0	0	0	0	0	0	12840	1247	43	2		2	PTCHD3	10	27702024	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9900	27702024	107832723	10847	18998											
PTCHD3	374308	broad.mit.edu	37	chr10	27702139	27702139	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaatgttggtaaattgatcGagcaaatgggtgagccactg	12	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27702139	T	T	27702139	2	4	9	1	0	0	0	0	0	0	0	1	12840	1045	37	3		3	PTCHD3	10	27702139	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	115	27702139	107832608	10848	18999											
ARMC4	55130	broad.mit.edu	37	chr10	28233892	28233892	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagctgtttgatttcctccCtacaaagatgcaatgccaga	8	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28233892	A	A	28233892	5	1	9	1	0	0	0	0	0	0	1	0	957	695	24	2	1788	2	ARMC4	10	28233892	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	531753	28233892	107300855	10849	19000											
MPP7	143098	broad.mit.edu	37	chr10	28347386	28347386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtgctgtagatgacatGggtcagaagggtattgaata	15	3	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28347386	T	T	28347386	1	4	9	0	1	0	0	0	0	0	0	0	9833	1363	47	2		2	MPP7	10	28347386	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	113494	28347386	107187361	10850	19001											
WAC	51322	broad.mit.edu	37	chr10	28822972	28822972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccttaccaggtaccagcCgaggccggggtggagggatt	16	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28822972	A	A	28822972	1	1	9	0	1	0	0	0	0	0	0	0	17374	667	23	1		1	WAC	10	28822972	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	475586	28822972	106711775	10851	19002											
SVIL	6840	broad.mit.edu	37	chr10	29821720	29821720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagttggtttggcgtcttGggacacaggctcactttgaa	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29821720	T	T	29821720	3	4	9	1	0	0	0	0	1	0	0	0	15539	1357	47	2	5192	2	SVIL	10	29821720	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	998748	29821720	105713027	10852	19003											
MTPAP	55149	broad.mit.edu	37	chr10	30602512	30602512	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatttgataggctaagccCagttctttacacaatgtagc	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30602512	A	A	30602512	1	1	9	0	1	0	0	0	0	0	0	0	10050	609	21	2		2	MTPAP	10	30602512	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	780792	30602512	104932235	10853	19004											
MTPAP	55149	broad.mit.edu	37	chr10	30625711	30625711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactttacatgattatagtGgtcaaaagaaatagacttac	6	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30625711	T	T	30625711	1	4	9	0	1	0	0	0	0	0	0	0	10050	1363	47	2		2	MTPAP	10	30625711	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23199	30625711	104909036	10854	19005											
MTPAP	55149	broad.mit.edu	37	chr10	30625791	30625791	+	Nonsense_Mutation	SNP	C	A	A													aaacatgtccaaatcacatcCtaacttcccaaaagtgttga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30625791	A	A	30625791	4	1	9	1	0	0	0	0	0	1	0	0	10050	690	24	2	1051	2	MTPAP	10	30625791	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	30625791	104908956	10855	19006	125	2									
MTPAP	55149	broad.mit.edu	37	chr10	30625799	30625799	+	Missense_Mutation	SNP	C	A	A													ccaaatcacatcctaacttcCcaaaagtgttgactgaggag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30625799	A	A	30625799	3	1	9	1	0	0	0	0	1	0	0	0	10050	623	22	2	1059	2	MTPAP	10	30625799	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	30625799	104908948	10856	19007	125	2									
MTPAP	55149	broad.mit.edu	37	chr10	30625825	30625825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgactgaggagccaaaGggtctgactatgcagtctgg	15	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30625825	T	T	30625825	2	4	9	1	0	0	0	0	0	0	0	1	10050	987	35	2		2	MTPAP	10	30625825	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	30625825	104908922	10857	19008											
MTPAP	55149	broad.mit.edu	37	chr10	30657966	30657966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcccaggccatgccagccCcatcttacccatctagtttt	6	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30657966	A	A	30657966	1	1	9	0	1	0	0	0	0	0	0	0	10050	638	22	2		2	MTPAP	10	30657966	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32141	30657966	104876781	10858	19009											
MAP3K8	1326	broad.mit.edu	37	chr10	30736648	30736648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaccagcttcctaataggtGggtcttagaaaaagccagct	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30736648	T	T	30736648	1	4	9	0	1	0	0	0	0	0	0	0	9348	1363	47	2		2	MAP3K8	10	30736648	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78682	30736648	104798099	10859	19010											
LYZL2	119180	broad.mit.edu	37	chr10	30900793	30900793	+	3'UTR	SNP	G	T	T													caagtttgagaaggaatattGggaggaaacgggacaagatg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30900793	T	T	30900793	1	4	9	0	1	0	0	0	0	0	0	0	9220	1363	47	2		2	LYZL2	10	30900793	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	164145	30900793	104633954	10860	19011	126	2									
LYZL2	119180	broad.mit.edu	37	chr10	30900803	30900803	+	3'UTR	SNP	G	T	T													aaggaatattgggaggaaacGggacaagatgacacaggcat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30900803	T	T	30900803	1	4	9	0	1	0	0	0	0	0	0	0	9220	1131	39	1		1	LYZL2	10	30900803	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	30900803	104633944	10861	19012	126	2									
LYZL2	119180	broad.mit.edu	37	chr10	30901001	30901001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaagaagcgtgacaatcCaaaccgtctcagtttcaaag	8	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30901001	A	A	30901001	1	1	9	0	1	0	0	0	0	0	0	0	9220	609	21	2		2	LYZL2	10	30901001	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	198	30901001	104633746	10862	19013											
ZNF438	220929	broad.mit.edu	37	chr10	31134326	31134326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagtccccttgcttcctGggaaggtcccttcttgtagc	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31134326	T	T	31134326	3	4	9	1	0	0	0	0	1	0	0	0	18037	1348	47	2	439	2	ZNF438	10	31134326	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	233325	31134326	104400421	10863	19014											
ZNF438	220929	broad.mit.edu	37	chr10	31137766	31137766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgtgtattcatgtggtctCgaaggtgctgtttgaactgg	14	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31137766	A	A	31137766	3	1	9	1	0	0	0	0	1	0	0	0	18037	884	31	3	926	3	ZNF438	10	31137766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3440	31137766	104396981	10864	19015											
ZEB1	6935	broad.mit.edu	37	chr10	31610497	31610497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagctgttcgctttttacCttatttaaaatgttgatcgc	7	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31610497	A	A	31610497	1	1	9	0	1	0	0	0	0	0	0	0	17749	696	24	2		2	ZEB1	10	31610497	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	472731	31610497	103924250	10865	19016											
ZEB1	6935	broad.mit.edu	37	chr10	31812931	31812931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgactctgattctacacCgcccaaaaagaaaatgcgga	8	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31812931	A	A	31812931	3	1	9	1	0	0	0	0	1	0	0	0	17749	652	23	1	2716	1	ZEB1	10	31812931	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	202434	31812931	103721816	10866	19017											
ZEB1	6935	broad.mit.edu	37	chr10	31813072	31813072	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacacaaacataaagtgtcCatgatatgatatactggaag	8	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31813072	G	G	31813072	1	3	9	0	1	0	0	0	0	0	0	0	17749	609	21	4		4	ZEB1	10	31813072	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	141	31813072	103721675	10867	19018											
ARHGAP12	94134	broad.mit.edu	37	chr10	32103170	32103170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaatccttagcaaaataGggaaaggacaacttacaacg	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32103170	T	T	32103170	1	4	9	0	1	0	0	0	0	0	0	0	867	1015	35	2		2	ARHGAP12	10	32103170	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	290098	32103170	103431577	10868	19019											
KIF5B	3799	broad.mit.edu	37	chr10	32306971	32306971	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctaccagaaaatatactCtttagtacctgtttgtgcac	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32306971	A	A	32306971	1	1	9	0	1	0	0	0	0	0	0	0	8376	928	32	3		3	KIF5B	10	32306971	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	203801	32306971	103227776	10869	19020											
KIF5B	3799	broad.mit.edu	37	chr10	32310070	32310070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagcttgctaaaattttGggggggaaaaggatgttaaa	12	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32310070	T	T	32310070	1	4	9	0	1	0	0	0	0	0	0	0	8376	1363	47	2		2	KIF5B	10	32310070	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3099	32310070	103224677	10870	19021											
KIF5B	3799	broad.mit.edu	37	chr10	32327108	32327108	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctttacatagggaactcGgtttttgtcttcatgaactg	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32327108	T	T	32327108	2	4	9	1	0	0	0	0	0	0	0	1	8376	1124	39	1		1	KIF5B	10	32327108	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17038	32327108	103207639	10871	19022											
EPC1	80314	broad.mit.edu	37	chr10	32594843	32594843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgtgctgaaatagccCgctgaagatgatgttcctaa	10	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32594843	A	A	32594843	3	1	9	1	0	0	0	0	1	0	0	0	5202	652	23	1	2396	1	EPC1	10	32594843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	267735	32594843	102939904	10872	19023											
C10orf68	79741	broad.mit.edu	37	chr10	33094024	33094024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacagtcaaagagtttccCtggtaagaaaatatttttaa	7	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33094024	A	A	33094024	3	1	9	1	0	0	0	0	1	0	0	0	1624	681	24	2	942	2	C10orf68	10	33094024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	499181	33094024	102440723	10873	19024											
C10orf68	79741	broad.mit.edu	37	chr10	33103379	33103379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacgatcaaagagtctccCtggtaagaacaaaaacttta	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33103379	A	A	33103379	3	1	9	1	0	0	0	0	1	0	0	0	1624	681	24	2	1030	2	C10orf68	10	33103379	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9355	33103379	102431368	10874	19025											
C10orf68	79741	broad.mit.edu	37	chr10	33134884	33134884	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacacaactgaagagtcacCgaggtaagagaaagaatttt	9	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33134884	A	A	33134884	2	1	9	1	0	0	0	0	0	0	0	1	1624	644	23	1		1	C10orf68	10	33134884	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31505	33134884	102399863	10875	19026											
ITGB1	3688	broad.mit.edu	37	chr10	33195923	33195923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagcaatagtgataaaGgacacacagtgcagtaaaaa	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33195923	T	T	33195923	1	4	9	0	1	0	0	0	0	0	0	0	7960	1015	35	2		2	ITGB1	10	33195923	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	61039	33195923	102338824	10876	19027											
ITGB1	3688	broad.mit.edu	37	chr10	33200558	33200558	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcactgccagtgtagttGgggttgcactcacacacacg	11	12	1	0	rs11009140	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33200558	T	T	33200558	2	4	9	1	0	0	0	0	0	0	0	1	7960	1335	47	2		2	ITGB1	10	33200558	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4635	33200558	102334189	10877	19028											
NRP1	8829	broad.mit.edu	37	chr10	33469319	33469319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaaacaatattgtctcCgtgagcaccgccaacagacc	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33469319	A	A	33469319	1	1	9	0	1	0	0	0	0	0	0	0	10755	667	23	1		1	NRP1	10	33469319	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	268761	33469319	102065428	10878	19029											
NRP1	8829	broad.mit.edu	37	chr10	33481283	33481283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgtgattgtcatgttccCagtggcagaaggtcttgtga	13	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33481283	A	A	33481283	3	1	9	1	0	0	0	0	1	0	0	0	10755	595	21	2	803	2	NRP1	10	33481283	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11964	33481283	102053464	10879	19030											
NRP1	8829	broad.mit.edu	37	chr10	33502241	33502241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaataagaagcccttcctcGggagaatgccagaggccctt	11	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33502241	T	T	33502241	1	4	9	0	1	0	0	0	0	0	0	0	10755	1131	39	1		1	NRP1	10	33502241	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20958	33502241	102032506	10880	19031											
NRP1	8829	broad.mit.edu	37	chr10	33502356	33502356	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgatcatcttccagtcCgagccgttgttgctgtaccc	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33502356	A	A	33502356	2	1	9	1	0	0	0	0	0	0	0	1	10755	639	23	1		1	NRP1	10	33502356	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	115	33502356	102032391	10881	19032											
NRP1	8829	broad.mit.edu	37	chr10	33542986	33542986	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcggtaggaatcctctccGggagtccacccattctcagg	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33542986	T	T	33542986	2	4	9	1	0	0	0	0	0	0	0	1	10755	1103	39	1		1	NRP1	10	33542986	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40630	33542986	101991761	10882	19033											
NRP1	8829	broad.mit.edu	37	chr10	33552856	33552856	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccacttaaacaacttccCcaagaaataacctgggtaaa	4	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33552856	A	A	33552856	1	1	9	0	1	0	0	0	0	0	0	0	10755	638	22	2		2	NRP1	10	33552856	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9870	33552856	101981891	10883	19034											
PARD3	56288	broad.mit.edu	37	chr10	34400397	34400397	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtagctggagtacctGgggttctctttggcactctg	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34400397	T	T	34400397	2	4	9	1	0	0	0	0	0	0	0	1	11537	1335	47	2		2	PARD3	10	34400397	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	847541	34400397	101134350	10884	19035											
PARD3	56288	broad.mit.edu	37	chr10	34648232	34648232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcagttgatcattcaccCgaagccttccatcctgggaa	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648232	A	A	34648232	3	1	9	1	0	0	0	0	1	0	0	0	11537	652	23	1	2243	1	PARD3	10	34648232	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	247835	34648232	100886515	10885	19036											
PARD3	56288	broad.mit.edu	37	chr10	34690768	34690768	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttactccagagaaaagttGggtatatgctccaaacccgt	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34690768	T	T	34690768	2	4	9	1	0	0	0	0	0	0	0	1	11537	1335	47	2		2	PARD3	10	34690768	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	42536	34690768	100843979	10886	19037											
PARD3	56288	broad.mit.edu	37	chr10	34739348	34739348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaccagttactagtatccCgcgggaggcttctgtagttt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34739348	A	A	34739348	3	1	9	1	0	0	0	0	1	0	0	0	11537	652	23	1	3578	1	PARD3	10	34739348	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48580	34739348	100795399	10887	19038											
CUL2	8453	broad.mit.edu	37	chr10	35333562	35333562	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgtttgtaatactctcCtgtttcagtcagaaagggag	9	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35333562	A	A	35333562	4	1	9	1	0	0	0	0	0	1	0	0	4088	690	24	2	1647	2	CUL2	10	35333562	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	594214	35333562	100201185	10888	19039											
CREM	1390	broad.mit.edu	37	chr10	35437439	35437439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggcaataggcaggcacCgttgaaagtcaaaatatatg	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35437439	A	A	35437439	1	1	9	0	1	0	0	0	0	0	0	0	3900	667	23	1		1	CREM	10	35437439	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103877	35437439	100097308	10889	19040											
CREM	1390	broad.mit.edu	37	chr10	35500193	35500193	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttccagggaagctgcccGggagtgtcgcaggaagaaga	16	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35500193	T	T	35500193	1	4	9	0	1	0	0	0	0	0	0	0	3900	1116	39	1		1	CREM	10	35500193	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	62754	35500193	100034554	10890	19041											
CREM	1390	broad.mit.edu	37	chr10	35500642	35500642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaaatgtctggagagcCgagttgcagtgctggaagtc	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35500642	A	A	35500642	2	1	9	1	0	0	0	0	0	0	0	1	3900	644	23	1		1	CREM	10	35500642	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	449	35500642	100034105	10891	19042											
CCNY	219771	broad.mit.edu	37	chr10	35819016	35819016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctcttttgctccaatcGggagatcagtcatctgaaaa	7	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35819016	T	T	35819016	1	4	9	0	1	0	0	0	0	0	0	0	2966	1131	39	1		1	CCNY	10	35819016	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	318374	35819016	99715731	10892	19043											
ANKRD30A	91074	broad.mit.edu	37	chr10	37438483	37438483	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtattcgttctcaaagtcGaccaagaggaatcagttaca	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37438483	T	T	37438483	1	4	9	0	1	0	0	0	0	0	0	0	658	1073	37	3		3	ANKRD30A	10	37438483	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1619467	37438483	98096264	10893	19044											
ANKRD30A	91074	broad.mit.edu	37	chr10	37442625	37442625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttaaaaatcagttgacCgaatatttctctaaactgat	4	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37442625	A	A	37442625	1	1	9	0	1	0	0	0	0	0	0	0	658	667	23	1		1	ANKRD30A	10	37442625	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4142	37442625	98092122	10894	19045											
ANKRD30A	91074	broad.mit.edu	37	chr10	37486216	37486216	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgctttttagagcctccCgagaagccatctgccttcga	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37486216	A	A	37486216	2	1	9	1	0	0	0	0	0	0	0	1	658	639	23	1		1	ANKRD30A	10	37486216	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43591	37486216	98048531	10895	19046											
ANKRD30A	91074	broad.mit.edu	37	chr10	37490289	37490289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttaaaaggtcatttgacCaagtatttctctaaaatgat	5	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37490289	A	A	37490289	1	1	9	0	1	0	0	0	0	0	0	0	658	609	21	2		2	ANKRD30A	10	37490289	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4073	37490289	98044458	10896	19047											
ZNF33A	7581	broad.mit.edu	37	chr10	38301204	38301204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaatctttcatgacccCattcctctttttctaactca	3	14	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38301204	A	A	38301204	1	1	9	0	1	0	0	0	0	0	0	0	17980	609	21	2		2	ZNF33A	10	38301204	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	810915	38301204	97233543	10897	19048											
ZNF33A	7581	broad.mit.edu	37	chr10	38306364	38306364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaggggatttgttgtttcCcagtagttaattcagggttt	11	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38306364	A	A	38306364	1	1	9	0	1	0	0	0	0	0	0	0	17980	638	22	2		2	ZNF33A	10	38306364	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5160	38306364	97228383	10898	19049											
ZNF33A	7581	broad.mit.edu	37	chr10	38344720	38344720	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaccctttgcatgtccCgaatgtgggaaattctttag	9	9	1	1	rs138923692	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38344720	A	A	38344720	2	1	9	1	0	0	0	0	0	0	0	1	17980	639	23	1		1	ZNF33A	10	38344720	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38356	38344720	97190027	10899	19050											
ZNF33B	7582	broad.mit.edu	37	chr10	43088670	43088670	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatagggtttctccccCgtgtgtgttctataatgttg	9	9	3	0	rs140658159	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43088670	A	A	43088670	2	1	9	1	0	0	0	0	0	0	0	1	17981	639	23	1		1	ZNF33B	10	43088670	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4743950	43088670	92446077	10900	19051											
ZNF33B	7582	broad.mit.edu	37	chr10	43127326	43127326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaccctgaattaactactGggaaacaacaaatcccctga	5	12	0	2	rs41301641	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43127326	T	T	43127326	1	4	9	0	1	0	0	0	0	0	0	0	17981	1363	47	2		2	ZNF33B	10	43127326	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38656	43127326	92407421	10901	19052											
BMS1	9790	broad.mit.edu	37	chr10	43288421	43288421	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggtaggagattttgcCgtgagtgacatcagtttcct	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43288421	A	A	43288421	2	1	9	1	0	0	0	0	0	0	0	1	1478	639	23	1		1	BMS1	10	43288421	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	161095	43288421	92246326	10902	19053											
BMS1	9790	broad.mit.edu	37	chr10	43316050	43316050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggtttcagaccatccCactgtattatatcgaagacc	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43316050	A	A	43316050	3	1	9	1	0	0	0	0	1	0	0	0	1478	594	21	2	2926	2	BMS1	10	43316050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27629	43316050	92218697	10903	19054											
RET	5979	broad.mit.edu	37	chr10	43612057	43612057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaagtgggaattccctcGgaagaacttggttcttggaa	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43612057	T	T	43612057	3	4	9	1	0	0	0	0	1	0	0	0	13343	1116	39	1	2208	1	RET	10	43612057	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	296007	43612057	91922690	10904	19055											
RET	5979	broad.mit.edu	37	chr10	43619156	43619156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgggagatcgtgaccCtagggggaaacccctatcct	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43619156	A	A	43619156	3	1	9	1	0	0	0	0	1	0	0	0	13343	680	24	2	2905	2	RET	10	43619156	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7099	43619156	91915591	10905	19056											
RET	5979	broad.mit.edu	37	chr10	43623699	43623699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcagcggcaaaattaatGgacacgtttgatagttaaca	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43623699	T	T	43623699	3	4	9	1	0	0	0	0	1	0	0	0	13343	1348	47	2	3437	2	RET	10	43623699	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4543	43623699	91911048	10906	19057											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43654264	43654264	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccctcttccgcccttttGgacctctcatgaaagtgaag	8	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43654264	T	T	43654264	4	4	9	1	0	0	0	0	0	1	0	0	3973	1349	47	2	769	2	CSGALNACT2	10	43654264	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30565	43654264	91880483	10907	19058											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43657670	43657670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttcttccacatggtgaGggatatgactgttggcggct	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43657670	T	T	43657670	1	4	9	0	1	0	0	0	0	0	0	0	3973	1015	35	2		2	CSGALNACT2	10	43657670	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3406	43657670	91877077	10908	19059											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43657742	43657742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggaaagagctttctccCagctccagttgagaaaatcc	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43657742	A	A	43657742	1	1	9	0	1	0	0	0	0	0	0	0	3973	609	21	2		2	CSGALNACT2	10	43657742	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	43657742	91877005	10909	19060											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43671427	43671427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaggattctggcttttggcGagattttggctttggaatga	13	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43671427	T	T	43671427	3	4	9	1	0	0	0	0	1	0	0	0	3973	1058	37	3	1305	3	CSGALNACT2	10	43671427	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13685	43671427	91863320	10910	19061											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43678725	43678725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacatggaagtgaaaggttGgggtggagaagatgttcatc	16	3	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43678725	T	T	43678725	3	4	9	1	0	0	0	0	1	0	0	0	3973	1357	47	2	1390	2	CSGALNACT2	10	43678725	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7298	43678725	91856022	10911	19062											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43678849	43678849	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctgatgagctgaccccCgagcagtaccgcatgtgcat	12	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43678849	G	G	43678849	2	3	9	1	0	0	0	0	0	0	0	1	3973	639	23	4		4	CSGALNACT2	10	43678849	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	124	43678849	91855898	10912	19063											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43678871	43678871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtaccgcatgtgcatcCagtctaaagccatgaatgag	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43678871	A	A	43678871	3	1	9	1	0	0	0	0	1	0	0	0	3973	595	21	2	1536	2	CSGALNACT2	10	43678871	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	43678871	91855876	10913	19064											
FXYD4	53828	broad.mit.edu	37	chr10	43871525	43871525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcactccaggtgagacGggcttctgtgggctgagggg	16	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43871525	T	T	43871525	1	4	9	0	1	0	0	0	0	0	0	0	6180	1131	39	1		1	FXYD4	10	43871525	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	192654	43871525	91663222	10914	19065											
HNRNPF	3185	broad.mit.edu	37	chr10	43882349	43882349	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcaacatctgcttcaccCgtcactcttccatctgggcc	5	17	6	0	rs140104128		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43882349	A	A	43882349	2	1	9	1	0	0	0	0	0	0	0	1	7332	639	23	1		1	HNRNPF	10	43882349	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10824	43882349	91652398	10915	19066											
CXCL12	6387	broad.mit.edu	37	chr10	44871563	44871563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataagatttaacactggccCgtgtactggttaaactgtgc	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44871563	A	A	44871563	1	1	9	0	1	0	0	0	0	0	0	0	4113	667	23	1		1	CXCL12	10	44871563	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	989214	44871563	90663184	10916	19067											
CXCL12	6387	broad.mit.edu	37	chr10	44876321	44876321	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgtagctcaggctgacGggcttccctagaagaggtaa	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44876321	T	T	44876321	2	4	9	1	0	0	0	0	0	0	0	1	4113	1103	39	1		1	CXCL12	10	44876321	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4758	44876321	90658426	10917	19068											
TMEM72	643236	broad.mit.edu	37	chr10	45430152	45430152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacttccttctgagcaagcGgaagaagaggaaagctgccc	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45430152	T	T	45430152	3	4	9	1	0	0	0	0	1	0	0	0	16324	1116	39	1	416	1	TMEM72	10	45430152	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	553831	45430152	90104595	10918	19069											
ALOX5	240	broad.mit.edu	37	chr10	45941109	45941109	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attactacttgtccccagacCggattccgaacagtgtggcc	9	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45941109	A	A	45941109	2	1	9	1	0	0	0	0	0	0	0	1	540	643	23	1		1	ALOX5	10	45941109	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	510957	45941109	89593638	10919	19070											
ANUBL1	93550	broad.mit.edu	37	chr10	46113684	46113684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggggctttcacaggtGggaggtgatgagtagtacat	17	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46113684	T	T	46113684	3	4	9	1	0	0	0	0	1	0	0	0	713	1348	47	2	239	2	ANUBL1	10	46113684	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	172575	46113684	89421063	10920	19071											
ANUBL1	93550	broad.mit.edu	37	chr10	46121482	46121482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggtttgtagacagccCagttccagagttctgaagcc	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46121482	A	A	46121482	3	1	9	1	0	0	0	0	1	0	0	0	713	594	21	2	410	2	ANUBL1	10	46121482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7798	46121482	89413265	10921	19072											
ANUBL1	93550	broad.mit.edu	37	chr10	46121886	46121886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtgaggacttaattccCggtagttaagaactgaagtc	10	7	1	3	rs41299230	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46121886	A	A	46121886	3	1	9	1	0	0	0	0	1	0	0	0	713	652	23	1	814	1	ANUBL1	10	46121886	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	404	46121886	89412861	10922	19073											
FAM21C	253725	broad.mit.edu	37	chr10	46224392	46224392	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtggacggactaatccGggaaaccaaagccacagatt	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46224392	T	T	46224392	3	4	9	1	0	0	0	0	1	0	0	0	5589	1116	39	1	219	1	FAM21C	10	46224392	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	102506	46224392	89310355	10923	19074											
FAM21C	253725	broad.mit.edu	37	chr10	46238946	46238946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggtacttttcttcacCaaataattttattccttaac	4	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46238946	A	A	46238946	1	1	9	0	1	0	0	0	0	0	0	0	5589	609	21	2		2	FAM21C	10	46238946	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14554	46238946	89295801	10924	19075											
FAM21C	253725	broad.mit.edu	37	chr10	46272914	46272914	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttgaatgcatttgtctctCgtatgttgtttcaaacacac	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46272914	A	A	46272914	1	1	9	0	1	0	0	0	0	0	0	0	5589	899	31	3		3	FAM21C	10	46272914	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33968	46272914	89261833	10925	19076											
FAM21C	253725	broad.mit.edu	37	chr10	46280039	46280039	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatcctgatgcccaccccaaGagcacaggtgtcttccagga	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46280039	T	T	46280039	3	4	9	1	0	0	0	0	1	0	0	0	5589	933	33	3	2599	3	FAM21C	10	46280039	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7125	46280039	89254708	10926	19077											
FAM21C	253725	broad.mit.edu	37	chr10	46282105	46282105	+	Intron	SNP	C	A	A													aaaccaaagaaccatccactCggatcgggaagatacaagta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46282105	A	A	46282105	1	1	9	0	1	0	0	0	0	0	0	0	5589	899	31	3		3	FAM21C	10	46282105	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2066	46282105	89252642	10927	19078	127	2									
FAM21C	253725	broad.mit.edu	37	chr10	46282111	46282111	+	Intron	SNP	G	T	T													aagaaccatccactcggatcGggaagatacaagtaattaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46282111	T	T	46282111	1	4	9	0	1	0	0	0	0	0	0	0	5589	1131	39	1		1	FAM21C	10	46282111	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	46282111	89252636	10928	19079	127	2									
SYT15	83849	broad.mit.edu	37	chr10	46968680	46968680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggggcacccaatctcGgccttgaagggttgggggca	17	10	1	1	rs10619285		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46968680	T	T	46968680	2	4	9	1	0	0	0	0	0	0	0	1	15590	1124	39	1		1	SYT15	10	46968680	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	686569	46968680	88566067	10929	19080											
ANXA8	653145	broad.mit.edu	37	chr10	47133421	47133421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcaaagtataggcctcCattgccacaggggccagagc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47133421	A	A	47133421	1	1	9	0	1	0	0	0	0	0	0	0	724	609	21	2		2	ANXA8	10	47133421	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	164741	47133421	88401326	10930	19081											
GDF10	2662	broad.mit.edu	37	chr10	48426672	48426672	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagggagttcatcttatcGggaacacagcagggctctgg	13	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48426672	T	T	48426672	2	4	9	1	0	0	0	0	0	0	0	1	6375	1103	39	1		1	GDF10	10	48426672	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1293251	48426672	87108075	10931	19082											
FRMPD2	143162	broad.mit.edu	37	chr10	49381011	49381011	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgtcactgagacacagctCgaaggcctgccaggcaaggc	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49381011	A	A	49381011	2	1	9	1	0	0	0	0	0	0	0	1	6118	871	31	3		3	FRMPD2	10	49381011	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	954339	49381011	86153736	10932	19083											
FRMPD2	143162	broad.mit.edu	37	chr10	49450190	49450190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctactgcttgaaaagcacGgttctctactgacctcagaa	8	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49450190	T	T	49450190	1	4	9	0	1	0	0	0	0	0	0	0	6118	1131	39	1		1	FRMPD2	10	49450190	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	69179	49450190	86084557	10933	19084											
MAPK8	5599	broad.mit.edu	37	chr10	49628312	49628312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgacgccttatgtagtgactCgctactacagagcacccgag	10	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49628312	A	A	49628312	3	1	9	1	0	0	0	0	1	0	0	0	9375	884	31	3	583	3	MAPK8	10	49628312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	178122	49628312	85906435	10934	19085											
MAPK8	5599	broad.mit.edu	37	chr10	49628329	49628329	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgctactacagagcaccCgaggtcatccttggcatggg	11	13	1	1	rs55984396		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49628329	A	A	49628329	2	1	9	1	0	0	0	0	0	0	0	1	9375	639	23	1		1	MAPK8	10	49628329	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	49628329	85906418	10935	19086											
MAPK8	5599	broad.mit.edu	37	chr10	49634507	49634507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgaagctctccaacaccCgtacatcaatgtctggtatg	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49634507	A	A	49634507	3	1	9	1	0	0	0	0	1	0	0	0	9375	652	23	1	1062	1	MAPK8	10	49634507	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6178	49634507	85900240	10936	19087											
C10orf72	196740	broad.mit.edu	37	chr10	50227762	50227762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggcgcctttggcagccCggtggggtttgatcagctcc	17	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50227762	A	A	50227762	3	1	9	1	0	0	0	0	1	0	0	0	1626	652	23	1	70	1	C10orf72	10	50227762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	593255	50227762	85306985	10937	19088											
C10orf72	196740	broad.mit.edu	37	chr10	50255018	50255018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgataggaatacagaagacGgttacttaccagcgtgactt	10	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50255018	T	T	50255018	1	4	9	0	1	0	0	0	0	0	0	0	1626	1131	39	1		1	C10orf72	10	50255018	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27256	50255018	85279729	10938	19089											
C10orf72	196740	broad.mit.edu	37	chr10	50256539	50256539	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctttggcagggactgcGggaggaatgtcaggcttctc	14	9	2	0	rs17854125	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50256539	T	T	50256539	2	4	9	1	0	0	0	0	0	0	0	1	1626	1103	39	1		1	C10orf72	10	50256539	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1521	50256539	85278208	10939	19090											
ERCC6	2074	broad.mit.edu	37	chr10	50680451	50680451	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttttcttcaatggtgccCgcagtcaggagcctgtacac	9	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50680451	A	A	50680451	2	1	9	1	0	0	0	0	0	0	0	1	5259	639	23	1		1	ERCC6	10	50680451	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	423912	50680451	84854296	10940	19091											
PGBD3	267004	broad.mit.edu	37	chr10	50723729	50723729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaataccatttctttccacGgattgatgcccgatacttat	6	10	1	2	rs140991023		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50723729	T	T	50723729	3	4	9	1	0	0	0	0	1	0	0	0	11877	1116	39	1	353	1	PGBD3	10	50723729	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43278	50723729	84811018	10941	19092											
PGBD3	267004	broad.mit.edu	37	chr10	50723740	50723740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttccacggattgatgccCgatacttatcaatgttttca	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50723740	A	A	50723740	3	1	9	1	0	0	0	0	1	0	0	0	11877	652	23	1	364	1	PGBD3	10	50723740	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	50723740	84811007	10942	19093											
PGBD3	267004	broad.mit.edu	37	chr10	50724750	50724750	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgggagttctcattacGgtgaagaaatcgtttggtgg	14	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50724750	T	T	50724750	2	4	9	1	0	0	0	0	0	0	0	1	11877	1103	39	1		1	PGBD3	10	50724750	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1010	50724750	84809997	10943	19094											
OGDHL	55753	broad.mit.edu	37	chr10	50959892	50959892	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatggagcgcactagccGggccagcagggtccgcttct	13	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50959892	T	T	50959892	2	4	9	1	0	0	0	0	0	0	0	1	10935	1115	39	1		1	OGDHL	10	50959892	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	235142	50959892	84574855	10944	19095											
AGAP8	728404	broad.mit.edu	37	chr10	51225508	51225508	+	Missense_Mutation	SNP	G	T	T													cagctccagagatcgcacacGggaaaggcgggtgccaagac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51225508	T	T	51225508	3	4	9	1	0	0	0	0	1	0	0	0	374	1116	39	1	521	1	AGAP8	10	51225508	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	265616	51225508	84309239	10945	19096	128	2									
AGAP8	728404	broad.mit.edu	37	chr10	51225517	51225517	+	Missense_Mutation	SNP	G	T	T													agatcgcacacgggaaaggcGggtgccaagactgtggtgga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51225517	T	T	51225517	3	4	9	1	0	0	0	0	1	0	0	0	374	1116	39	1	530	1	AGAP8	10	51225517	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	51225517	84309230	10946	19097	128	2									
AGAP7	653268	broad.mit.edu	37	chr10	51465417	51465417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatatggagtcacccagccCggtgtccatgtccttggata	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51465417	A	A	51465417	3	1	9	1	0	0	0	0	1	0	0	0	373	652	23	1	956	1	AGAP7	10	51465417	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	239900	51465417	84069330	10947	19098											
NCOA4	8031	broad.mit.edu	37	chr10	51579278	51579278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaaattaaagataacttgcGagaggtgtgacatgtgcttt	11	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51579278	T	T	51579278	3	4	9	1	0	0	0	0	1	0	0	0	10326	1058	37	3	191	3	NCOA4	10	51579278	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	113861	51579278	83955469	10948	19099											
NCOA4	8031	broad.mit.edu	37	chr10	51580696	51580696	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctcagcagctctactcGgtaaggtgactgcatggcta	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51580696	T	T	51580696	2	4	9	1	0	0	0	0	0	0	0	1	10326	1130	39	1		1	NCOA4	10	51580696	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1418	51580696	83954051	10949	19100											
NCOA4	8031	broad.mit.edu	37	chr10	51584652	51584652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatttcttcaataatgtcGggggaaacctaaagggctta	10	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51584652	T	T	51584652	3	4	9	1	0	0	0	0	1	0	0	0	10326	1116	39	1	829	1	NCOA4	10	51584652	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3956	51584652	83950095	10950	19101											
AGAP6	414189	broad.mit.edu	37	chr10	51751375	51751375	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgcagcagtcgaataaacGagttgataaatttttatcaa	7	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51751375	T	T	51751375	1	4	9	0	1	0	0	0	0	0	0	0	372	1073	37	3		3	AGAP6	10	51751375	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	166723	51751375	83783372	10951	19102											
AGAP6	414189	broad.mit.edu	37	chr10	51768714	51768714	+	Missense_Mutation	SNP	G	T	T													agaatcatgctgacaccatcGggagcggtagagccatcccc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51768714	T	T	51768714	3	4	9	1	0	0	0	0	1	0	0	0	372	1116	39	1	859	1	AGAP6	10	51768714	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17339	51768714	83766033	10952	19103	129	2									
AGAP6	414189	broad.mit.edu	37	chr10	51768720	51768720	+	Missense_Mutation	SNP	G	T	T													atgctgacaccatcgggagcGgtagagccatccccattaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51768720	T	T	51768720	3	4	9	1	0	0	0	0	1	0	0	0	372	1116	39	1	865	1	AGAP6	10	51768720	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	51768720	83766027	10953	19104	129	2									
AGAP6	414189	broad.mit.edu	37	chr10	51768752	51768752	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccattaaacagggcatgctCttaaagcgaagtgggaaatg	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51768752	A	A	51768752	2	1	9	1	0	0	0	0	0	0	0	1	372	900	32	3		3	AGAP6	10	51768752	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	51768752	83765995	10954	19105											
AGAP6	414189	broad.mit.edu	37	chr10	51768812	51768812	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacgtcaccctgtgttcCaatggcatgctcacctatta	6	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51768812	A	A	51768812	2	1	9	1	0	0	0	0	0	0	0	1	372	581	21	2		2	AGAP6	10	51768812	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	51768812	83765935	10955	19106											
AGAP6	414189	broad.mit.edu	37	chr10	51769367	51769367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgggccagtttgaacttGggagtcctcatgtgtattga	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51769367	T	T	51769367	3	4	9	1	0	0	0	0	1	0	0	0	372	1339	47	2	1512	2	AGAP6	10	51769367	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	555	51769367	83765380	10956	19107											
AGAP6	414189	broad.mit.edu	37	chr10	51769404	51769404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatgctcaggtatccacCgcagtcttggcccccacctt	8	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51769404	A	A	51769404	3	1	9	1	0	0	0	0	1	0	0	0	372	652	23	1	1549	1	AGAP6	10	51769404	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	51769404	83765343	10957	19108											
FAM21A	387680	broad.mit.edu	37	chr10	51829379	51829379	+	Nonsense_Mutation	SNP	G	T	T													aaatcaagaaacaagtggacGgactaattcgggaaaccaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51829379	T	T	51829379	4	4	9	1	0	0	0	0	0	1	0	0	5587	1117	39	1	209	1	FAM21A	10	51829379	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59975	51829379	83705368	10958	19109	130	2									
FAM21A	387680	broad.mit.edu	37	chr10	51829389	51829389	+	Missense_Mutation	SNP	G	T	T													acaagtggacggactaattcGggaaaccaaagccacagatt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51829389	T	T	51829389	3	4	9	1	0	0	0	0	1	0	0	0	5587	1116	39	1	219	1	FAM21A	10	51829389	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	51829389	83705358	10959	19110	130	2									
FAM21A	387680	broad.mit.edu	37	chr10	51892479	51892479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgctgttaccagagctGggtctttggtggtttgcttg	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51892479	T	T	51892479	1	4	9	0	1	0	0	0	0	0	0	0	5587	1363	47	2		2	FAM21A	10	51892479	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	63090	51892479	83642268	10960	19111											
ASAH2	56624	broad.mit.edu	37	chr10	52005005	52005005	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgatatctgctacttgtcCtgtgcagtcagctcgtccaa	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52005005	A	A	52005005	4	1	9	1	0	0	0	0	0	1	0	0	1011	690	24	2	2081	2	ASAH2	10	52005005	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	112526	52005005	83529742	10961	19112											
ASAH2B	653308	broad.mit.edu	37	chr10	52502712	52502712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcgacaatttatggacCgcacgcattatctgcttaca	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52502712	A	A	52502712	3	1	9	1	0	0	0	0	1	0	0	0	1012	652	23	1	30	1	ASAH2B	10	52502712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	497707	52502712	83032035	10962	19113											
CSTF2T	23283	broad.mit.edu	37	chr10	53459071	53459071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctctcccactgaactccCgcccattgaggttccgcatg	9	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53459071	A	A	53459071	3	1	9	1	0	0	0	0	1	0	0	0	4019	652	23	1	1615	1	CSTF2T	10	53459071	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	956359	53459071	82075676	10963	19114											
PRKG1	5592	broad.mit.edu	37	chr10	54049909	54049909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgcttcccattagccatGgacattgtatacactgcaat	6	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54049909	T	T	54049909	1	4	9	0	1	0	0	0	0	0	0	0	12628	1363	47	2		2	PRKG1	10	54049909	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	590838	54049909	81484838	10964	19115											
MBL2	4153	broad.mit.edu	37	chr10	54528149	54528149	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattctctgcagcattcctGggggtggccacagaggcctg	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54528149	T	T	54528149	2	4	9	1	0	0	0	0	0	0	0	1	9443	1335	47	2		2	MBL2	10	54528149	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	478240	54528149	81006598	10965	19116											
PCDH15	65217	broad.mit.edu	37	chr10	55566609	55566609	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcccctttgataatgtgttCagaggtacattctcctcatg	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55566609	A	A	55566609	2	1	9	1	0	0	0	0	0	0	0	1	11605	813	29	3		3	PCDH15	10	55566609	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1038460	55566609	79968138	10966	19117											
PCDH15	65217	broad.mit.edu	37	chr10	55665003	55665003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgtctttctaatgtgtcCtgcattctgatataacaaag	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55665003	A	A	55665003	1	1	9	0	1	0	0	0	0	0	0	0	11605	696	24	2		2	PCDH15	10	55665003	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	98394	55665003	79869744	10967	19118											
PCDH15	65217	broad.mit.edu	37	chr10	55782675	55782675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgaaggatggtagtccCagctggcaaattctcttcaa	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55782675	A	A	55782675	3	1	9	1	0	0	0	0	1	0	0	0	11605	594	21	2	5043	2	PCDH15	10	55782675	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117672	55782675	79752072	10968	19119											
PCDH15	65217	broad.mit.edu	37	chr10	55839181	55839181	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctaaggttagaatcccCgtgctagtgacaaaacaaac	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55839181	A	A	55839181	2	1	9	1	0	0	0	0	0	0	0	1	11605	639	23	1		1	PCDH15	10	55839181	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	56506	55839181	79695566	10969	19120											
PCDH15	65217	broad.mit.edu	37	chr10	55955416	55955416	+	Intron	DEL	C	-	-													tatgagatttgttacacaaaCaagagcaaaatatgtattta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55955416	-	-	55955416	6	5	9	0	1	1	0	1	0	0	0	0	11605	493	17	0		0	PCDH15	10	55955416	Intron	DEL	C	TCGA-05-4396-01A-21D-1855-08	116235	55955416	79579331	10970	19121											
IPMK	253430	broad.mit.edu	37	chr10	59975946	59975946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaatctcttccattaatGggtacttgctgacctgttgc	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59975946	T	T	59975946	3	4	9	1	0	0	0	0	1	0	0	0	7862	1348	47	2	756	2	IPMK	10	59975946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4020530	59975946	75558801	10971	19122											
IPMK	253430	broad.mit.edu	37	chr10	59997515	59997515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagaattccagctctcttGggccccttggaggtggttgt	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59997515	T	T	59997515	3	4	9	1	0	0	0	0	1	0	0	0	7862	1348	47	2	1019	2	IPMK	10	59997515	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21569	59997515	75537232	10972	19123											
BICC1	80114	broad.mit.edu	37	chr10	60273104	60273104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttacaaggtaggcatccCtcgtgttctcggactctccg	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60273104	A	A	60273104	1	1	9	0	1	0	0	0	0	0	0	0	1433	696	24	2		2	BICC1	10	60273104	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	275589	60273104	75261643	10973	19124											
BICC1	80114	broad.mit.edu	37	chr10	60549475	60549475	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgttagaacatcttgctGggagcttagcatcagctatt	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60549475	C	C	60549475	3	2	9	1	0	0	0	0	1	0	0	0	1433	1348	47	4	859	4	BICC1	10	60549475	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	276371	60549475	74985272	10974	19125											
PHYHIPL	84457	broad.mit.edu	37	chr10	61005084	61005084	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttgttattgctcctgtGggatcaccaggagatgaatt	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61005084	T	T	61005084	2	4	9	1	0	0	0	0	0	0	0	1	11962	1335	47	2		2	PHYHIPL	10	61005084	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	455609	61005084	74529663	10975	19126											
FAM13C	220965	broad.mit.edu	37	chr10	61007407	61007407	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccacatcttgcttgctgatGaggacctctaatagtctcag	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61007407	T	T	61007407	2	4	9	1	0	0	0	0	0	0	0	1	5500	1277	45	3		3	FAM13C	10	61007407	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2323	61007407	74527340	10976	19127											
FAM13C	220965	broad.mit.edu	37	chr10	61011413	61011414	+	Missense_Mutation	DNP	CG	AT	AT													tcttgtcagccctagtttctCggagatggtcaagaagtaca					rs149458856		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	61011414	AT	AT	61011413	3	1	9	1	0	0	0	0	1	0	0	0	5500	884	31	3	209	3	FAM13C	10	61011413	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	4006	61011413	74523334	10977	19128											
CCDC6	8030	broad.mit.edu	37	chr10	61552632	61552632	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcgttgagtagacggctcCattggatgagtcccaacttg	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61552632	A	A	61552632	1	1	9	0	1	0	0	0	0	0	0	0	2858	609	21	2		2	CCDC6	10	61552632	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	541219	61552632	73982115	10978	19129											
CCDC6	8030	broad.mit.edu	37	chr10	61564225	61564225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggtgtgtaagggatcGggctggacacagtgcgaggt	19	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61564225	T	T	61564225	3	4	9	1	0	0	0	0	1	0	0	0	2858	1116	39	1	378	1	CCDC6	10	61564225	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11593	61564225	73970522	10979	19130											
CCDC6	8030	broad.mit.edu	37	chr10	61574506	61574506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaggtcaatcttctccCgtctcaactaaaggaaggaa	7	10	5	0	rs150943768		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61574506	A	A	61574506	3	1	9	1	0	0	0	0	1	0	0	0	2858	652	23	1	858	1	CCDC6	10	61574506	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10281	61574506	73960241	10980	19131											
ANK3	288	broad.mit.edu	37	chr10	61827746	61827746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccatcctgatatctgtcCgttcacatggactctgtgga	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61827746	A	A	61827746	3	1	9	1	0	0	0	0	1	0	0	0	622	652	23	1	1204	1	ANK3	10	61827746	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	253240	61827746	73707001	10981	19132											
ANK3	288	broad.mit.edu	37	chr10	61828512	61828512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccgaaggctggccaccccGggaagtctcggacaacgacg	13	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61828512	T	T	61828512	2	4	9	1	0	0	0	0	0	0	0	1	622	1115	39	1		1	ANK3	10	61828512	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	766	61828512	73706235	10982	19133											
ANK3	288	broad.mit.edu	37	chr10	61829009	61829009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgacatatggttcggtGggaaggtatcttttggtgaa	14	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61829009	T	T	61829009	3	4	9	1	0	0	0	0	1	0	0	0	622	1348	47	2	1844	2	ANK3	10	61829009	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	497	61829009	73705738	10983	19134											
ANK3	288	broad.mit.edu	37	chr10	61829197	61829197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctctgtggtacaagtGggtgcagaatgttctgtcag	12	7	4	1	rs140398841	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61829197	T	T	61829197	2	4	9	1	0	0	0	0	0	0	0	1	622	1335	47	2		2	ANK3	10	61829197	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	188	61829197	73705550	10984	19135											
ANK3	288	broad.mit.edu	37	chr10	61829491	61829491	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttataggcgtgcgcaacttGgggtcaactttagaggtgtt	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61829491	T	T	61829491	2	4	9	1	0	0	0	0	0	0	0	1	622	1335	47	2		2	ANK3	10	61829491	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	294	61829491	73705256	10985	19136											
ANK3	288	broad.mit.edu	37	chr10	61831756	61831756	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcatcagcaactctgacGggaatgtgtgacactgctga	10	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61831756	T	T	61831756	2	4	9	1	0	0	0	0	0	0	0	1	622	1103	39	1		1	ANK3	10	61831756	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2265	61831756	73702991	10986	19137											
ANK3	288	broad.mit.edu	37	chr10	61832368	61832368	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcaaaaacttggtagacGggtagcttgctctcctgtat	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61832368	T	T	61832368	2	4	9	1	0	0	0	0	0	0	0	1	622	1103	39	1		1	ANK3	10	61832368	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	612	61832368	73702379	10987	19138											
ANK3	288	broad.mit.edu	37	chr10	61836017	61836017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggtgtcgaaacagacCatattgattttaacggagaa	11	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61836017	A	A	61836017	3	1	9	1	0	0	0	0	1	0	0	0	622	595	21	2	8852	2	ANK3	10	61836017	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3649	61836017	73698730	10988	19139											
ANK3	288	broad.mit.edu	37	chr10	61844465	61844465	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgcaaggaagattctacGggatcattcattttggcaaa	9	8	3	1	rs140104995	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61844465	T	T	61844465	2	4	9	1	0	0	0	0	0	0	0	1	622	1103	39	1		1	ANK3	10	61844465	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8448	61844465	73690282	10989	19140											
ANK3	288	broad.mit.edu	37	chr10	61941095	61941095	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggccgtatacctttgtctGggcgtccacatgagcccctt	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61941095	C	C	61941095	3	2	9	1	0	0	0	0	1	0	0	0	622	1357	47	4	11394	4	ANK3	10	61941095	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96630	61941095	73593652	10990	19141											
ANK3	288	broad.mit.edu	37	chr10	62038691	62038691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaattttcctgttctcccCaaagagaacaaatttgacaa	5	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62038691	A	A	62038691	1	1	9	0	1	0	0	0	0	0	0	0	622	609	21	2		2	ANK3	10	62038691	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	97596	62038691	73496056	10991	19142											
RHOBTB1	9886	broad.mit.edu	37	chr10	62631328	62631328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcttccttctctcgttccCttttcacacgctggtagtga	6	13	3	1	rs15700		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62631328	A	A	62631328	3	1	9	1	0	0	0	0	1	0	0	0	13442	681	24	2	91	2	RHOBTB1	10	62631328	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	592637	62631328	72903419	10992	19143											
RHOBTB1	9886	broad.mit.edu	37	chr10	62648340	62648340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtctcaggaactgcaccCtcggcttccagccccagagc	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62648340	A	A	62648340	3	1	9	1	0	0	0	0	1	0	0	0	13442	680	24	2	1028	2	RHOBTB1	10	62648340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17012	62648340	72886407	10993	19144											
TMEM26	219623	broad.mit.edu	37	chr10	63188787	63188787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgatctcgagtgatccCgcctccaatgggtagaagcc	12	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63188787	A	A	63188787	3	1	9	1	0	0	0	0	1	0	0	0	16274	652	23	1	616	1	TMEM26	10	63188787	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	540447	63188787	72345960	10994	19145											
ARID5B	84159	broad.mit.edu	37	chr10	63852099	63852099	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcctgtcgggtatcaccCatgaccatgtcaggccctaa	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63852099	A	A	63852099	2	1	9	1	0	0	0	0	0	0	0	1	924	581	21	2		2	ARID5B	10	63852099	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	663312	63852099	71682648	10995	19146											
ARID5B	84159	broad.mit.edu	37	chr10	63852230	63852230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaccggaaaatgagccCgcagaacattggggcggcgc	14	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63852230	A	A	63852230	3	1	9	1	0	0	0	0	1	0	0	0	924	652	23	1	3046	1	ARID5B	10	63852230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131	63852230	71682517	10996	19147											
ZNF365	22891	broad.mit.edu	37	chr10	64159308	64159308	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgagggcacccgcattcGgtatgtaaccaccctgatct	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64159308	T	T	64159308	2	4	9	1	0	0	0	0	0	0	0	1	17995	1103	39	1		1	ZNF365	10	64159308	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	307078	64159308	71375439	10997	19148											
ZNF365	22891	broad.mit.edu	37	chr10	64382893	64382893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataaaccaccatctttcgGggttgaaagattctcattgt	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64382893	T	T	64382893	1	4	9	0	1	0	0	0	0	0	0	0	17995	1232	43	2		2	ZNF365	10	64382893	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	223585	64382893	71151854	10998	19149											
ZNF365	22891	broad.mit.edu	37	chr10	64403733	64403733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtctccaggtaaattccCttctgtctctaaatgaatgg	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64403733	A	A	64403733	1	1	9	0	1	0	0	0	0	0	0	0	17995	696	24	2		2	ZNF365	10	64403733	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20840	64403733	71131014	10999	19150											
JMJD1C	221037	broad.mit.edu	37	chr10	64960475	64960475	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttttagcaagattatgcTttgtaaaaagttaaactcct	6	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64960475	C	C	64960475	1	2	9	0	1	0	0	0	0	0	0	0	8020	1624	56	5		5	JMJD1C	10	64960475	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	556742	64960475	70574272	11000	19151											
JMJD1C	221037	broad.mit.edu	37	chr10	64967197	64967197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattacttctgaaccacccCagctggaaacactggtagta	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64967197	A	A	64967197	3	1	9	1	0	0	0	0	1	0	0	0	8020	595	21	2	3458	2	JMJD1C	10	64967197	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6722	64967197	70567550	11001	19152											
JMJD1C	221037	broad.mit.edu	37	chr10	64967837	64967837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaatgcaggcatactgcGgagtgtatttgtagaagaaa	12	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64967837	T	T	64967837	3	4	9	1	0	0	0	0	1	0	0	0	8020	1116	39	1	4098	1	JMJD1C	10	64967837	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	640	64967837	70566910	11002	19153											
JMJD1C	221037	broad.mit.edu	37	chr10	64968074	64968074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcattactctgtttatcacCgtaaatatttgaaacttctt	5	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64968074	A	A	64968074	3	1	9	1	0	0	0	0	1	0	0	0	8020	652	23	1	4335	1	JMJD1C	10	64968074	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	237	64968074	70566673	11003	19154											
JMJD1C	221037	broad.mit.edu	37	chr10	64973853	64973853	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtttctaatgtactgcttcGagtaggaattggatgaaaac	10	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64973853	T	T	64973853	2	4	9	1	0	0	0	0	0	0	0	1	8020	1066	37	3		3	JMJD1C	10	64973853	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5779	64973853	70560894	11004	19155											
JMJD1C	221037	broad.mit.edu	37	chr10	64979703	64979703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttcctcatgaagctgcGggttgtccctgagaactggg	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64979703	T	T	64979703	3	4	9	1	0	0	0	0	1	0	0	0	8020	1116	39	1	7226	1	JMJD1C	10	64979703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5850	64979703	70555044	11005	19156											
JMJD1C	221037	broad.mit.edu	37	chr10	64981962	64981962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatcaacttgactgacacCatgttcagaggaatttatag	8	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64981962	A	A	64981962	1	1	9	0	1	0	0	0	0	0	0	0	8020	609	21	2		2	JMJD1C	10	64981962	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2259	64981962	70552785	11006	19157											
CTNNA3	29119	broad.mit.edu	37	chr10	68535266	68535266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatattcagggtattactcCtttctttttttccagcctgc	5	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68535266	A	A	68535266	3	1	9	1	0	0	0	0	1	0	0	0	4048	681	24	2	1667	2	CTNNA3	10	68535266	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3553304	68535266	66999481	11007	19158											
LRRTM3	347731	broad.mit.edu	37	chr10	68687081	68687081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacctgtgacaaatttacGgaacttggatctgtcctata	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68687081	T	T	68687081	3	4	9	1	0	0	0	0	1	0	0	0	9128	1116	39	1	413	1	LRRTM3	10	68687081	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	151815	68687081	66847666	11008	19159											
CTNNA3	29119	broad.mit.edu	37	chr10	68979379	68979379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacctccagctcatcaaGggcacttcccagggttgctg	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68979379	T	T	68979379	3	4	9	1	0	0	0	0	1	0	0	0	4048	1000	35	2	1910	2	CTNNA3	10	68979379	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	292298	68979379	66555368	11009	19160											
CTNNA3	29119	broad.mit.edu	37	chr10	68979436	68979436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtcatattctggatccCttgtgaagcatttgaaatta	9	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68979436	A	A	68979436	3	1	9	1	0	0	0	0	1	0	0	0	4048	681	24	2	1967	2	CTNNA3	10	68979436	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	68979436	66555311	11010	19161											
DNAJC12	56521	broad.mit.edu	37	chr10	69565361	69565361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaatctgaattttgcGgggagactgacttctctagg	12	7	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69565361	T	T	69565361	3	4	9	1	0	0	0	0	1	0	0	0	4671	1116	39	1	122	1	DNAJC12	10	69565361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	585925	69565361	65969386	11011	19162											
HERC4	26091	broad.mit.edu	37	chr10	69692462	69692462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaccttatgaaagccCgcatgaaaagcatcaaataa	6	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69692462	A	A	69692462	2	1	9	1	0	0	0	0	0	0	0	1	7127	639	23	1		1	HERC4	10	69692462	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	127101	69692462	65842285	11012	19163											
HERC4	26091	broad.mit.edu	37	chr10	69716656	69716656	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatctgtaagactgcatcGgtctgtaacagagtagtttt	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69716656	T	T	69716656	2	4	9	1	0	0	0	0	0	0	0	1	7127	1103	39	1		1	HERC4	10	69716656	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24194	69716656	65818091	11013	19164											
HERC4	26091	broad.mit.edu	37	chr10	69750677	69750677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctgctgagatatctgcGgatgatcaggttgtataagt	12	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69750677	T	T	69750677	3	4	9	1	0	0	0	0	1	0	0	0	7127	1116	39	1	1802	1	HERC4	10	69750677	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34021	69750677	65784070	11014	19165											
MYPN	84665	broad.mit.edu	37	chr10	69957244	69957244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggactgtaaggtagactcCagcacccatgcttagttcca	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69957244	A	A	69957244	1	1	9	0	1	0	0	0	0	0	0	0	10192	609	21	2		2	MYPN	10	69957244	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	206567	69957244	65577503	11015	19166											
MYPN	84665	broad.mit.edu	37	chr10	69970183	69970183	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgtattcatgctcttctCggagtgtagtggagagtgat	14	5	3	2	rs142354704		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69970183	A	A	69970183	2	1	9	1	0	0	0	0	0	0	0	1	10192	875	31	3		3	MYPN	10	69970183	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12939	69970183	65564564	11016	19167											
PBLD	64081	broad.mit.edu	37	chr10	70048388	70048388	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacttgcagcagattctcCgtgttcactttcaggttctc	7	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70048388	A	A	70048388	2	1	9	1	0	0	0	0	0	0	0	1	11583	639	23	1		1	PBLD	10	70048388	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	78205	70048388	65486359	11017	19168											
PBLD	64081	broad.mit.edu	37	chr10	70056663	70056663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgcaaagttgtctgtcGggtgcagttttcggataaaa	12	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70056663	T	T	70056663	3	4	9	1	0	0	0	0	1	0	0	0	11583	1116	39	1	823	1	PBLD	10	70056663	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8275	70056663	65478084	11018	19169											
RUFY2	55680	broad.mit.edu	37	chr10	70161395	70161395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcagaccaggtagatccCggacactagctcctatttcc	7	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70161395	A	A	70161395	3	1	9	1	0	0	0	0	1	0	0	0	13850	652	23	1	1719	1	RUFY2	10	70161395	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104732	70161395	65373352	11019	19170											
DNA2	1763	broad.mit.edu	37	chr10	70192061	70192061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaagtcaataattaaatctCgaagttttttgctgaaaagt	7	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70192061	A	A	70192061	3	1	9	1	0	0	0	0	1	0	0	0	4636	884	31	3	1447	3	DNA2	10	70192061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30666	70192061	65342686	11020	19171											
TET1	80312	broad.mit.edu	37	chr10	70406703	70406703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaacttctttactaaccCtacaaaaaacctagtgtcta	3	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70406703	A	A	70406703	3	1	9	1	0	0	0	0	1	0	0	0	15891	681	24	2	4227	2	TET1	10	70406703	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	214642	70406703	65128044	11021	19172											
TET1	80312	broad.mit.edu	37	chr10	70450715	70450715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggcttctcctggtcccCgaagactgcttcagccacac	8	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70450715	A	A	70450715	3	1	9	1	0	0	0	0	1	0	0	0	15891	652	23	1	5597	1	TET1	10	70450715	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44012	70450715	65084032	11022	19173											
TET1	80312	broad.mit.edu	37	chr10	70451098	70451098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccctatctgatgaccccCtgtcacctgctgaggagaaa	8	14	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70451098	A	A	70451098	3	1	9	1	0	0	0	0	1	0	0	0	15891	680	24	2	5980	2	TET1	10	70451098	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	383	70451098	65083649	11023	19174											
CCAR1	55749	broad.mit.edu	37	chr10	70513692	70513692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgatgctcaatttacatGggtggatgctttccctttgt	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70513692	T	T	70513692	3	4	9	1	0	0	0	0	1	0	0	0	2756	1357	47	2	1240	2	CCAR1	10	70513692	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62594	70513692	65021055	11024	19175											
CCAR1	55749	broad.mit.edu	37	chr10	70520836	70520836	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatcccagttaatagccCgattgacaaaacagcttaaa	5	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70520836	A	A	70520836	2	1	9	1	0	0	0	0	0	0	0	1	2756	644	23	1		1	CCAR1	10	70520836	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7144	70520836	65013911	11025	19176											
DDX50	79009	broad.mit.edu	37	chr10	70666734	70666734	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catctttagatacttctactCataaatcaagtgataataaa	3	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70666734	A	A	70666734	3	1	9	1	0	0	0	0	1	0	0	0	4401	826	29	3	361	3	DDX50	10	70666734	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145898	70666734	64868013	11026	19177											
DDX21	9188	broad.mit.edu	37	chr10	70741316	70741316	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgctttgatgtacctacCgcatcagtaacagaaataca	7	9	1	2	rs141397392		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70741316	A	A	70741316	2	1	9	1	0	0	0	0	0	0	0	1	4382	639	23	1		1	DDX21	10	70741316	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	74582	70741316	64793431	11027	19178											
DDX21	9188	broad.mit.edu	37	chr10	70742521	70742521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacaaaagtaacagatccCaaaacaaaggccagaagcgg	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70742521	A	A	70742521	3	1	9	1	0	0	0	0	1	0	0	0	4382	595	21	2	2363	2	DDX21	10	70742521	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1205	70742521	64792226	11028	19179											
KIAA1279	26128	broad.mit.edu	37	chr10	70775500	70775500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagagaacttttcttattGggtcagcactatgtctttga	9	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70775500	T	T	70775500	3	4	9	1	0	0	0	0	1	0	0	0	8291	1339	47	2	1220	2	KIAA1279	10	70775500	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32979	70775500	64759247	11029	19180											
VPS26A	9559	broad.mit.edu	37	chr10	70931007	70931007	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaatcacaggcatctgcCgaacagcctgaaatgtgaac	9	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70931007	A	A	70931007	2	1	9	1	0	0	0	0	0	0	0	1	17324	639	23	1		1	VPS26A	10	70931007	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	155507	70931007	64603740	11030	19181											
HKDC1	80201	broad.mit.edu	37	chr10	71007161	71007161	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagatcctggtggacctGggtctggaaccgtctgaggc	16	9	2	3	rs141565402		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71007161	T	T	71007161	2	4	9	1	0	0	0	0	0	0	0	1	7260	1335	47	2		2	HKDC1	10	71007161	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76154	71007161	64527586	11031	19182											
HKDC1	80201	broad.mit.edu	37	chr10	71017217	71017217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcccattggcctaatccCactgtatccattgatggttt	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71017217	A	A	71017217	1	1	9	0	1	0	0	0	0	0	0	0	7260	609	21	2		2	HKDC1	10	71017217	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10056	71017217	64517530	11032	19183											
HKDC1	80201	broad.mit.edu	37	chr10	71018666	71018666	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatagatgacatctggaccCgatacgacacggaggtggat	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71018666	A	A	71018666	2	1	9	1	0	0	0	0	0	0	0	1	7260	644	23	1		1	HKDC1	10	71018666	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1449	71018666	64516081	11033	19184											
HK1	3098	broad.mit.edu	37	chr10	71144613	71144613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacatggggatcaaaggccCcaggatgcctctgggcttca	12	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71144613	A	A	71144613	3	1	9	1	0	0	0	0	1	0	0	0	7257	623	22	2	2005	2	HK1	10	71144613	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125947	71144613	64390134	11034	19185											
HK1	3098	broad.mit.edu	37	chr10	71144626	71144626	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggccccaggatgcctctGggcttcacgttctcatttcc	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71144626	T	T	71144626	2	4	9	1	0	0	0	0	0	0	0	1	7257	1335	47	2		2	HK1	10	71144626	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	71144626	64390121	11035	19186											
H2AFY2	55506	broad.mit.edu	37	chr10	71835457	71835457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatgtccaagctgtccCgttcagctagggcaggtgtc	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71835457	A	A	71835457	3	1	9	1	0	0	0	0	1	0	0	0	6995	652	23	1	45	1	H2AFY2	10	71835457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	690831	71835457	63699290	11036	19187											
AIFM2	84883	broad.mit.edu	37	chr10	71883246	71883246	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agttgtccttgaaagtcaccGagtaagaaatgaatgtcttt	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71883246	T	T	71883246	4	4	9	1	0	0	0	0	0	1	0	0	427	1059	37	3	940	3	AIFM2	10	71883246	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47789	71883246	63651501	11037	19188											
TYSND1	219743	broad.mit.edu	37	chr10	71899696	71899696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcagagcttgctccgcGgggcctctgccaggggccgc	15	16	2	1	rs76914789	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71899696	T	T	71899696	3	4	9	1	0	0	0	0	1	0	0	0	16943	1116	39	1	19	1	TYSND1	10	71899696	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16450	71899696	63635051	11038	19189											
PRF1	5551	broad.mit.edu	37	chr10	72358587	72358587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttccgagtggcgctccCggtaggtttggtggaaggag	16	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72358587	A	A	72358587	3	1	9	1	0	0	0	0	1	0	0	0	12584	652	23	1	781	1	PRF1	10	72358587	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	458891	72358587	63176160	11039	19190											
ADAMTS14	140766	broad.mit.edu	37	chr10	72462070	72462070	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccgtccctggttcaggcGggcctcatccgcacagacag	12	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72462070	T	T	72462070	2	4	9	1	0	0	0	0	0	0	0	1	259	1103	39	1		1	ADAMTS14	10	72462070	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	103483	72462070	63072677	11040	19191											
ADAMTS14	140766	broad.mit.edu	37	chr10	72517710	72517710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctggcactgacccaccCacggcagtgctctgccacct	9	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72517710	A	A	72517710	1	1	9	0	1	0	0	0	0	0	0	0	259	609	21	2		2	ADAMTS14	10	72517710	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55640	72517710	63017037	11041	19192											
C10orf27	219793	broad.mit.edu	37	chr10	72538240	72538240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtaggctgaactgactcGggagggatctccttacacag	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72538240	T	T	72538240	1	4	9	0	1	0	0	0	0	0	0	0	1611	1131	39	1		1	C10orf27	10	72538240	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20530	72538240	62996507	11042	19193											
SGPL1	8879	broad.mit.edu	37	chr10	72576682	72576682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccaaggcatttgtctcCgtttttttagtccaaaggat	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72576682	A	A	72576682	1	1	9	0	1	0	0	0	0	0	0	0	14331	667	23	1		1	SGPL1	10	72576682	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38442	72576682	62958065	11043	19194											
SGPL1	8879	broad.mit.edu	37	chr10	72576695	72576695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctccgtttttttagtcCaaaggatcccagtgtgtaga	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72576695	A	A	72576695	1	1	9	0	1	0	0	0	0	0	0	0	14331	609	21	2		2	SGPL1	10	72576695	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	72576695	62958052	11044	19195											
SGPL1	8879	broad.mit.edu	37	chr10	72604366	72604366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaccctgctgatagtctGgggatatgagtttgtcttcc	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72604366	T	T	72604366	3	4	9	1	0	0	0	0	1	0	0	0	14331	1357	47	2	170	2	SGPL1	10	72604366	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27671	72604366	62930381	11045	19196											
UNC5B	219699	broad.mit.edu	37	chr10	73046539	73046539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcatcatccgccaggccCgcctgtcggacactgccaac	8	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73046539	A	A	73046539	3	1	9	1	0	0	0	0	1	0	0	0	17118	652	23	1	664	1	UNC5B	10	73046539	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	442173	73046539	62488208	11046	19197											
UNC5B	219699	broad.mit.edu	37	chr10	73050694	73050694	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggcctcaggggatgcGgcgctgtatgcggggctcgt	19	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73050694	T	T	73050694	2	4	9	1	0	0	0	0	0	0	0	1	17118	1103	39	1		1	UNC5B	10	73050694	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4155	73050694	62484053	11047	19198											
UNC5B	219699	broad.mit.edu	37	chr10	73050876	73050876	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaggcccagtaagaaccCgaggatgtctggggtggttg	17	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73050876	A	A	73050876	1	1	9	0	1	0	0	0	0	0	0	0	17118	667	23	1		1	UNC5B	10	73050876	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	182	73050876	62483871	11048	19199											
UNC5B	219699	broad.mit.edu	37	chr10	73053375	73053375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagctctcccaacctgccCagggaggcaaaagaaagccc	9	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73053375	A	A	73053375	1	1	9	0	1	0	0	0	0	0	0	0	17118	609	21	2		2	UNC5B	10	73053375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2499	73053375	62481372	11049	19200											
SLC29A3	55315	broad.mit.edu	37	chr10	73104001	73104001	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttgccgttgcctccacCgtgccctccatgctgtgcct	8	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73104001	A	A	73104001	2	1	9	1	0	0	0	0	0	0	0	1	14650	639	23	1		1	SLC29A3	10	73104001	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50626	73104001	62430746	11050	19201											
CDH23	64072	broad.mit.edu	37	chr10	73461871	73461871	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagcctcaacagcaccacGggcaagatccgcaccaccca	7	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73461871	T	T	73461871	2	4	9	1	0	0	0	0	0	0	0	1	3138	1103	39	1		1	CDH23	10	73461871	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	357870	73461871	62072876	11051	19202											
CDH23	64072	broad.mit.edu	37	chr10	73498294	73498294	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagaatgacaacagccccCggtttgacttcacctccgac	8	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73498294	A	A	73498294	2	1	9	1	0	0	0	0	0	0	0	1	3138	643	23	1		1	CDH23	10	73498294	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36423	73498294	62036453	11052	19203											
CDH23	64072	broad.mit.edu	37	chr10	73498332	73498332	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcggcggtcagcataccCgaggactgccctgtgggcca	14	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73498332	A	A	73498332	2	1	9	1	0	0	0	0	0	0	0	1	3138	639	23	1		1	CDH23	10	73498332	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	73498332	62036415	11053	19204											
CDH23	64072	broad.mit.edu	37	chr10	73569629	73569629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcatggcctacagcccCggctacttcgtggtggacat	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73569629	A	A	73569629	2	1	9	1	0	0	0	0	0	0	0	1	3138	639	23	1		1	CDH23	10	73569629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71297	73569629	61965118	11054	19205											
CDH23	64072	broad.mit.edu	37	chr10	73572115	73572115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcaccagggcctcacacCccaagtcagtgaaaggcact	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73572115	A	A	73572115	1	1	9	0	1	0	0	0	0	0	0	0	3138	623	22	2		2	CDH23	10	73572115	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2486	73572115	61962632	11055	19206											
CCDC109A	90550	broad.mit.edu	37	chr10	74619073	74619073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaactgcaagaagaggatcGgggaattgacagagttgcta	13	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74619073	T	T	74619073	3	4	9	1	0	0	0	0	1	0	0	0	2770	1116	39	1	369	1	CCDC109A	10	74619073	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1046958	74619073	60915674	11056	19207											
OIT3	170392	broad.mit.edu	37	chr10	74666380	74666380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatgtgagcaaaacaacGgtggctgcagtgagatctgt	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74666380	T	T	74666380	3	4	9	1	0	0	0	0	1	0	0	0	10944	1116	39	1	585	1	OIT3	10	74666380	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47307	74666380	60868367	11057	19208											
OIT3	170392	broad.mit.edu	37	chr10	74684301	74684301	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctactttggcattgagccCgtggtgcacgtgagcggctt	13	11	1	2	rs12260002	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74684301	A	A	74684301	2	1	9	1	0	0	0	0	0	0	0	1	10944	639	23	1		1	OIT3	10	74684301	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17921	74684301	60850446	11058	19209											
OIT3	170392	broad.mit.edu	37	chr10	74690314	74690314	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtgtttcagatgactcGgtaaagcagtacacatcccg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74690314	T	T	74690314	2	4	9	1	0	0	0	0	0	0	0	1	10944	1103	39	1		1	OIT3	10	74690314	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6013	74690314	60844433	11059	19210											
OIT3	170392	broad.mit.edu	37	chr10	74692131	74692131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtgtttctgcactgccGggttcttgtctgtggagtgt	15	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74692131	T	T	74692131	3	4	9	1	0	0	0	0	1	0	0	0	10944	1116	39	1	1521	1	OIT3	10	74692131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1817	74692131	60842616	11060	19211											
OIT3	170392	broad.mit.edu	37	chr10	74692166	74692166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgttggacgagcgttccCgctgtgcccagggttgccac	15	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74692166	A	A	74692166	3	1	9	1	0	0	0	0	1	0	0	0	10944	652	23	1	1556	1	OIT3	10	74692166	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	74692166	60842581	11061	19212											
PLA2G12B	84647	broad.mit.edu	37	chr10	74714268	74714268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacagactccattcttcCctcccagcagctccagaaaa	5	16	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74714268	A	A	74714268	3	1	9	1	0	0	0	0	1	0	0	0	12086	623	22	2	427	2	PLA2G12B	10	74714268	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22102	74714268	60820479	11062	19213											
P4HA1	5033	broad.mit.edu	37	chr10	74774018	74774018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaattctatttcctgtcccCagctctttgaaagcatctgg	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74774018	A	A	74774018	2	1	9	1	0	0	0	0	0	0	0	1	11450	581	21	2		2	P4HA1	10	74774018	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59750	74774018	60760729	11063	19214											
P4HA1	5033	broad.mit.edu	37	chr10	74810843	74810843	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccccacggcacagcatttCgtacttctgtctctctggca	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74810843	A	A	74810843	4	1	9	1	0	0	0	0	0	1	0	0	11450	893	31	3	847	3	P4HA1	10	74810843	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36825	74810843	60723904	11064	19215											
NUDT13	25961	broad.mit.edu	37	chr10	74874206	74874206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctatgttactaagacacGgtgagttttagccaacctga	8	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74874206	T	T	74874206	3	4	9	1	0	0	0	0	1	0	0	0	10824	1130	39	1	85	1	NUDT13	10	74874206	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63363	74874206	60660541	11065	19216											
ECD	11319	broad.mit.edu	37	chr10	74899399	74899399	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcacttaccatcctctggGggaagattagctgcttcttt	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74899399	T	T	74899399	2	4	9	1	0	0	0	0	0	0	0	1	4928	1219	43	2		2	ECD	10	74899399	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25193	74899399	60635348	11066	19217											
TTC18	118491	broad.mit.edu	37	chr10	75034162	75034162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaattagttcccagaccacGgggttattccccattctcta	6	13	1	1	rs141452391	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75034162	T	T	75034162	1	4	9	0	1	0	0	0	0	0	0	0	16811	1131	39	1		1	TTC18	10	75034162	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	134763	75034162	60500585	11067	19218											
ANXA7	310	broad.mit.edu	37	chr10	75139570	75139570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatattatcaacatttaatGggaacaactattcaaagctc	4	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75139570	T	T	75139570	1	4	9	0	1	0	0	0	0	0	0	0	723	1363	47	2		2	ANXA7	10	75139570	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	105408	75139570	60395177	11068	19219											
ANXA7	310	broad.mit.edu	37	chr10	75139702	75139702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacactgcttaacaagtctCgattagccatctgcaaacaa	5	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75139702	A	A	75139702	3	1	9	1	0	0	0	0	1	0	0	0	723	884	31	3	312	3	ANXA7	10	75139702	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132	75139702	60395045	11069	19220											
ANXA7	310	broad.mit.edu	37	chr10	75139867	75139867	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttaaagcaagattcatcGgtccctagtctcccctcacc	6	14	3	1	rs138551538		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75139867	T	T	75139867	2	4	9	1	0	0	0	0	0	0	0	1	723	1103	39	1		1	ANXA7	10	75139867	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	165	75139867	60394880	11070	19221											
ANXA7	310	broad.mit.edu	37	chr10	75147503	75147503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctctgatcattggaacGgttggccaccacatccacaa	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75147503	T	T	75147503	3	4	9	1	0	0	0	0	1	0	0	0	723	1116	39	1	851	1	ANXA7	10	75147503	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7636	75147503	60387244	11071	19222											
ANXA7	310	broad.mit.edu	37	chr10	75147542	75147542	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgcctgctcatctgtccCtggaagaaccacacatgttt	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75147542	A	A	75147542	5	1	9	1	0	0	0	0	0	0	1	0	723	695	24	2	890	2	ANXA7	10	75147542	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	75147542	60387205	11072	19223											
ZMYND17	118490	broad.mit.edu	37	chr10	75184466	75184466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgaaaggattagaccCaaaggcagtgatgtgtgtat	13	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75184466	A	A	75184466	3	1	9	1	0	0	0	0	1	0	0	0	17835	594	21	2	158	2	ZMYND17	10	75184466	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36924	75184466	60350281	11073	19224											
USP54	159195	broad.mit.edu	37	chr10	75277074	75277074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctattccaggcatcaccGgggaggggttagcaggatcc	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75277074	T	T	75277074	3	4	9	1	0	0	0	0	1	0	0	0	17212	1116	39	1	1964	1	USP54	10	75277074	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	92608	75277074	60257673	11074	19225											
USP54	159195	broad.mit.edu	37	chr10	75283260	75283261	+	Intron	DNP	GG	TT	TT													attttgctaaagagaagacaGggaacttacaagcttagatg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	75283261	TT	TT	75283260	1	4	9	0	1	0	0	0	0	0	0	0	17212	1015	35	2		2	USP54	10	75283260	Intron	DNP	GG	TCGA-05-4396-01A-21D-1855-08	6186	75283260	60251487	11075	19226											
USP54	159195	broad.mit.edu	37	chr10	75283451	75283451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagttcctgttcctgcgccCtcctggccacctcttcctgc	8	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75283451	A	A	75283451	3	1	9	1	0	0	0	0	1	0	0	0	17212	681	24	2	2834	2	USP54	10	75283451	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	191	75283451	60251296	11076	19227											
USP54	159195	broad.mit.edu	37	chr10	75302715	75302715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcacccatttaacacccCacatcccaggataaagtgtt	6	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75302715	A	A	75302715	1	1	9	0	1	0	0	0	0	0	0	0	17212	609	21	2		2	USP54	10	75302715	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19264	75302715	60232032	11077	19228											
USP54	159195	broad.mit.edu	37	chr10	75335368	75335368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgaggtgcaaacatccCttgtacactaccacgacccc	7	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75335368	A	A	75335368	3	1	9	1	0	0	0	0	1	0	0	0	17212	681	24	2	5093	2	USP54	10	75335368	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32653	75335368	60199379	11078	19229											
MYOZ1	58529	broad.mit.edu	37	chr10	75399639	75399639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctaagatatatatttctGggactcttggtttagggatg	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75399639	T	T	75399639	1	4	9	0	1	0	0	0	0	0	0	0	10189	1363	47	2		2	MYOZ1	10	75399639	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	64271	75399639	60135108	11079	19230											
SYNPO2L	79933	broad.mit.edu	37	chr10	75407460	75407460	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccagcgatagcagctcGgggttgggcgagttcttcgt	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75407460	T	T	75407460	2	4	9	1	0	0	0	0	0	0	0	1	15577	1103	39	1		1	SYNPO2L	10	75407460	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7821	75407460	60127287	11080	19231											
SYNPO2L	79933	broad.mit.edu	37	chr10	75407493	75407493	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcgtctcctcctttccCggccggaacatctgcttccg	7	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75407493	A	A	75407493	2	1	9	1	0	0	0	0	0	0	0	1	15577	639	23	1		1	SYNPO2L	10	75407493	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	75407493	60127254	11081	19232											
SYNPO2L	79933	broad.mit.edu	37	chr10	75407981	75407981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtagttggccgctgccCttgtaggcccggggtaaagg	18	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75407981	A	A	75407981	3	1	9	1	0	0	0	0	1	0	0	0	15577	681	24	2	1508	2	SYNPO2L	10	75407981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	488	75407981	60126766	11082	19233											
AGAP5	729092	broad.mit.edu	37	chr10	75492324	75492324	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcgtccactgtctggtcGgtatctcccactctgccacc	7	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75492324	T	T	75492324	1	4	9	0	1	0	0	0	0	0	0	0	371	1131	39	1		1	AGAP5	10	75492324	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	84343	75492324	60042423	11083	19234											
SEC24C	9632	broad.mit.edu	37	chr10	75528770	75528770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgtggcctcaggtatcCgtgctgtagatttctttgga	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75528770	A	A	75528770	3	1	9	1	0	0	0	0	1	0	0	0	14109	652	23	1	2346	1	SEC24C	10	75528770	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36446	75528770	60005977	11084	19235											
SEC24C	9632	broad.mit.edu	37	chr10	75529705	75529705	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgaccgtgcctatgtcCgacagctagttacctccatg	9	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75529705	A	A	75529705	2	1	9	1	0	0	0	0	0	0	0	1	14109	644	23	1		1	SEC24C	10	75529705	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	935	75529705	60005042	11085	19236											
SEC24C	9632	broad.mit.edu	37	chr10	75530049	75530049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtctagacaaagtctccCgttgagagtactaccgaacc	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75530049	A	A	75530049	2	1	9	1	0	0	0	0	0	0	0	1	14109	639	23	1		1	SEC24C	10	75530049	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	344	75530049	60004698	11086	19237											
NDST2	8509	broad.mit.edu	37	chr10	75563500	75563500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaacagggaagaaatcCatgtacctaggaagtagcac	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75563500	A	A	75563500	3	1	9	1	0	0	0	0	1	0	0	0	10351	594	21	2	697	2	NDST2	10	75563500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33451	75563500	59971247	11087	19238											
NDST2	8509	broad.mit.edu	37	chr10	75566885	75566885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtatgatagaacttgccCgagaagcccaagttgaaggt	11	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75566885	A	A	75566885	2	1	9	1	0	0	0	0	0	0	0	1	10351	639	23	1		1	NDST2	10	75566885	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3385	75566885	59967862	11088	19239											
CAMK2G	818	broad.mit.edu	37	chr10	75597183	75597183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattcccatagtgactgcGgggagaaagaggccagtctg	14	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75597183	T	T	75597183	1	4	9	0	1	0	0	0	0	0	0	0	2628	1131	39	1		1	CAMK2G	10	75597183	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30298	75597183	59937564	11089	19240											
CAMK2G	818	broad.mit.edu	37	chr10	75597234	75597234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagacacttaccttgacacCgccatccgacttcttgttca	7	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75597234	A	A	75597234	3	1	9	1	0	0	0	0	1	0	0	0	2628	652	23	1	757	1	CAMK2G	10	75597234	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	75597234	59937513	11090	19241											
CAMK2G	818	broad.mit.edu	37	chr10	75612067	75612067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtcttcaaacagctcccCgccggtaacactgcaaccaa	6	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75612067	A	A	75612067	3	1	9	1	0	0	0	0	1	0	0	0	2628	652	23	1	1552	1	CAMK2G	10	75612067	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14833	75612067	59922680	11091	19242											
CAMK2G	818	broad.mit.edu	37	chr10	75632750	75632750	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagggaacactcaccccGggcagacaacttcttggtat	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75632750	T	T	75632750	2	4	9	1	0	0	0	0	0	0	0	1	2628	1115	39	1		1	CAMK2G	10	75632750	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20683	75632750	59901997	11092	19243											
VCL	7414	broad.mit.edu	37	chr10	75855496	75855496	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttatcggcaagatcttctCgccaagtgtgaccgagtgga	11	11	2	2	rs150402791	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75855496	A	A	75855496	2	1	9	1	0	0	0	0	0	0	0	1	17266	871	31	3		3	VCL	10	75855496	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	222746	75855496	59679251	11093	19244											
VCL	7414	broad.mit.edu	37	chr10	75877758	75877758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagggaccctgggtaacGgaaagtacctttttccttgc	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75877758	T	T	75877758	1	4	9	0	1	0	0	0	0	0	0	0	17266	1131	39	1		1	VCL	10	75877758	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22262	75877758	59656989	11094	19245											
DUPD1	338599	broad.mit.edu	37	chr10	76803596	76803596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgatgaaggctgccgccGggtagaagaagacactgagg	16	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76803596	T	T	76803596	3	4	9	1	0	0	0	0	1	0	0	0	4844	1116	39	1	290	1	DUPD1	10	76803596	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	925838	76803596	58731151	11095	19246											
C10orf11	83938	broad.mit.edu	37	chr10	77818366	77818366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatcagacaagctgtcGggatctctgaggctgccact	12	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77818366	T	T	77818366	1	4	9	0	1	0	0	0	0	0	0	0	1593	1131	39	1		1	C10orf11	10	77818366	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1014770	77818366	57716381	11096	19247											
KCNMA1	3778	broad.mit.edu	37	chr10	78647070	78647070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtttgtcccgggactccCtggacttgggccggttctgt	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78647070	A	A	78647070	3	1	9	1	0	0	0	0	1	0	0	0	8143	681	24	2	78	2	KCNMA1	10	78647070	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	828704	78647070	56887677	11097	19248											
KCNMA1	3778	broad.mit.edu	37	chr10	78651524	78651524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcctttaagcaaacaccCtaaagtcatgacagccgaca	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78651524	A	A	78651524	1	1	9	0	1	0	0	0	0	0	0	0	8143	696	24	2		2	KCNMA1	10	78651524	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4454	78651524	56883223	11098	19249											
KCNMA1	3778	broad.mit.edu	37	chr10	78674754	78674754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatggttgacgtaacatccCgtgcactgggctgttatctg	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78674754	A	A	78674754	3	1	9	1	0	0	0	0	1	0	0	0	8143	652	23	1	803	1	KCNMA1	10	78674754	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23230	78674754	56859993	11099	19250											
KCNMA1	3778	broad.mit.edu	37	chr10	78870024	78870024	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggtggacattgtgaccatGagtaaatagacacattccca	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78870024	T	T	78870024	2	4	9	1	0	0	0	0	0	0	0	1	8143	1277	45	3		3	KCNMA1	10	78870024	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	195270	78870024	56664723	11100	19251											
KCNMA1	3778	broad.mit.edu	37	chr10	78870099	78870099	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggtcccctgaattctcCacctaaagcaaatgggacag	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78870099	A	A	78870099	2	1	9	1	0	0	0	0	0	0	0	1	8143	581	21	2		2	KCNMA1	10	78870099	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	78870099	56664648	11101	19252											
DLG5	9231	broad.mit.edu	37	chr10	79603367	79603367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctcactgtacctcttcCgaagggcgtcatagtccttc	7	14	3	0	rs149488681		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79603367	A	A	79603367	3	1	9	1	0	0	0	0	1	0	0	0	4598	652	23	1	4905	1	DLG5	10	79603367	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	733268	79603367	55931380	11102	19253											
DLG5	9231	broad.mit.edu	37	chr10	79603449	79603449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagaatctcggatgaccCgttgtgcttcaacacctgga	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79603449	A	A	79603449	3	1	9	1	0	0	0	0	1	0	0	0	4598	652	23	1	4987	1	DLG5	10	79603449	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	79603449	55931298	11103	19254											
POLR3A	11128	broad.mit.edu	37	chr10	79737300	79737300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcctcttgggagggttcGggtccctgtcagccttgtga	17	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79737300	T	T	79737300	3	4	9	1	0	0	0	0	1	0	0	0	12323	1116	39	1	67	1	POLR3A	10	79737300	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	133851	79737300	55797447	11104	19255											
POLR3A	11128	broad.mit.edu	37	chr10	79744965	79744965	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgatgatctctttaatccGgggcacgcccagggtgatgt	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79744965	T	T	79744965	2	4	9	1	0	0	0	0	0	0	0	1	12323	1115	39	1		1	POLR3A	10	79744965	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7665	79744965	55789782	11105	19256											
POLR3A	11128	broad.mit.edu	37	chr10	79745800	79745800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcaactacaaacagctcGgggttctaacgcgtcttgga	12	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79745800	T	T	79745800	1	4	9	0	1	0	0	0	0	0	0	0	12323	1131	39	1		1	POLR3A	10	79745800	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	835	79745800	55788947	11106	19257											
POLR3A	11128	broad.mit.edu	37	chr10	79760814	79760814	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactgatggcctgctgtcCcacacaggcaatcatctgtg	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79760814	A	A	79760814	4	1	9	1	0	0	0	0	0	1	0	0	12323	632	22	2	1830	2	POLR3A	10	79760814	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15014	79760814	55773933	11107	19258											
POLR3A	11128	broad.mit.edu	37	chr10	79770261	79770261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaatagcagcaatcagcGgttccccattcctcggggtt	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79770261	T	T	79770261	3	4	9	1	0	0	0	0	1	0	0	0	12323	1116	39	1	2642	1	POLR3A	10	79770261	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9447	79770261	55764486	11108	19259											
ZMIZ1	57178	broad.mit.edu	37	chr10	80961364	80961364	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaacgttcatggctctcGggtagaacctagtgaaacgg	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80961364	T	T	80961364	1	4	9	0	1	0	0	0	0	0	0	0	17822	1131	39	1		1	ZMIZ1	10	80961364	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1191103	80961364	54573383	11109	19260											
ZMIZ1	57178	broad.mit.edu	37	chr10	80961429	80961429	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatccagcagaccaatgacCgactgcagtgcatcaagcag	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80961429	A	A	80961429	2	1	9	1	0	0	0	0	0	0	0	1	17822	644	23	1		1	ZMIZ1	10	80961429	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	80961429	54573318	11110	19261											
ZMIZ1	57178	broad.mit.edu	37	chr10	81053183	81053183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaattcatgaaccagcccGggccgcgggggcctgcctcc	13	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81053183	T	T	81053183	3	4	9	1	0	0	0	0	1	0	0	0	17822	1116	39	1	1033	1	ZMIZ1	10	81053183	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91754	81053183	54481564	11111	19262											
ZMIZ1	57178	broad.mit.edu	37	chr10	81056252	81056252	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatggaaaccagcaatatGgaccaaacagccagttcccc	7	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81056252	T	T	81056252	4	4	9	1	0	0	0	0	0	1	0	0	17822	1349	47	2	1289	2	ZMIZ1	10	81056252	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3069	81056252	54478495	11112	19263											
ZMIZ1	57178	broad.mit.edu	37	chr10	81071000	81071000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggcgccgggacctgccCgagagaaggggtgggtgtga	20	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81071000	A	A	81071000	1	1	9	0	1	0	0	0	0	0	0	0	17822	667	23	1		1	ZMIZ1	10	81071000	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14748	81071000	54463747	11113	19264											
SFTPD	6441	broad.mit.edu	37	chr10	81701312	81701313	+	Intron	INS	-	T	T													tgagctatgtactcattttaINSttttttttgtttttagcatt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81701313	T	T	81701312	6	5	9	0	1	1	1	0	0	0	0	0	14306	464	16	0		0	SFTPD	10	81701312	Intron	INS	-	TCGA-05-4396-01A-21D-1855-08	630312	81701312	53833435	11114	19265											
C10orf57	80195	broad.mit.edu	37	chr10	81850576	81850576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaggcatcacaagtggtcGggctcagctactctggttcc	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81850576	T	T	81850576	3	4	9	1	0	0	0	0	1	0	0	0	1620	1116	39	1	289	1	C10orf57	10	81850576	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149264	81850576	53684171	11115	19266											
TSPAN14	81619	broad.mit.edu	37	chr10	82280344	82280344	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtaccccctcctcaaccCtggtccaccccctctcagga	5	22	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82280344	A	A	82280344	1	1	9	0	1	0	0	0	0	0	0	0	16763	696	24	2		2	TSPAN14	10	82280344	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	429768	82280344	53254403	11116	19267											
TSPAN14	81619	broad.mit.edu	37	chr10	82280483	82280483	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggcagcttcttatctGggctgtctgtaccccttcct	8	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82280483	T	T	82280483	1	4	9	0	1	0	0	0	0	0	0	0	16763	1363	47	2		2	TSPAN14	10	82280483	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	139	82280483	53254264	11117	19268											
NRG3	10718	broad.mit.edu	37	chr10	84744979	84744979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggctattcatccacaaGggccagttctgtgcccatca	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84744979	T	T	84744979	3	4	9	1	0	0	0	0	1	0	0	0	10744	1000	35	2	1987	2	NRG3	10	84744979	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2464496	84744979	50789768	11118	19269											
CDHR1	92211	broad.mit.edu	37	chr10	85971957	85971957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgatccacccatccactGggcttatctacacccagccc	5	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85971957	T	T	85971957	3	4	9	1	0	0	0	0	1	0	0	0	3148	1348	47	2	1634	2	CDHR1	10	85971957	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1226978	85971957	49562790	11119	19270											
RGR	5995	broad.mit.edu	37	chr10	86012638	86012638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggcctggaactcagcCgtctctctggtgctcttcgt	11	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86012638	A	A	86012638	2	1	9	1	0	0	0	0	0	0	0	1	13400	639	23	1		1	RGR	10	86012638	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40681	86012638	49522109	11120	19271											
FAM190B	54462	broad.mit.edu	37	chr10	86132138	86132138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagagaaacatgaaaatGggccaccacaggatatgttt	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86132138	T	T	86132138	3	4	9	1	0	0	0	0	1	0	0	0	5569	1348	47	2	1332	2	FAM190B	10	86132138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119500	86132138	49402609	11121	19272											
GRID1	2894	broad.mit.edu	37	chr10	87407104	87407104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcatatacagcagaatccCggacagtgccataagacatt	7	11	1	2	rs76097378	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87407104	A	A	87407104	3	1	9	1	0	0	0	0	1	0	0	0	6837	652	23	1	997	1	GRID1	10	87407104	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1274966	87407104	48127643	11122	19273											
GRID1	2894	broad.mit.edu	37	chr10	87614258	87614258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctgaggcttaccttgcGcatgtctttgccaaaagtct	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87614258	T	T	87614258	3	4	9	1	0	0	0	0	1	0	0	0	6837	1087	38	3	1837	3	GRID1	10	87614258	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	207154	87614258	47920489	11123	19274											
WAPAL	23063	broad.mit.edu	37	chr10	88220961	88220961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatatgatccagaccaccCaaaagccggagttcttcttt	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88220961	A	A	88220961	3	1	9	1	0	0	0	0	1	0	0	0	17375	593	21	2	1158	2	WAPAL	10	88220961	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	606703	88220961	47313786	11124	19275											
LDB3	11155	broad.mit.edu	37	chr10	88477867	88477867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgagcaattctttgcccCgctgtgtgccaagtgcaaca	9	11	1	1	rs145983824		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88477867	A	A	88477867	3	1	9	1	0	0	0	0	1	0	0	0	8769	652	23	1	2197	1	LDB3	10	88477867	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	256906	88477867	47056880	11125	19276											
BMPR1A	657	broad.mit.edu	37	chr10	88615775	88615775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatctggatgcctctcacCgtactggagttttgggaatt	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88615775	A	A	88615775	1	1	9	0	1	0	0	0	0	0	0	0	1475	667	23	1		1	BMPR1A	10	88615775	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	137908	88615775	46918972	11126	19277											
MMRN2	79812	broad.mit.edu	37	chr10	88696623	88696623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcagccatggcaaagacCgttgctgtgcttccactccc	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88696623	A	A	88696623	2	1	9	1	0	0	0	0	0	0	0	1	9765	639	23	1		1	MMRN2	10	88696623	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80848	88696623	46838124	11127	19278											
MMRN2	79812	broad.mit.edu	37	chr10	88703953	88703953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccaggctgggaccagcGgggtcctcccctcctcccct	10	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88703953	T	T	88703953	1	4	9	0	1	0	0	0	0	0	0	0	9765	1131	39	1		1	MMRN2	10	88703953	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7330	88703953	46830794	11128	19279											
AGAP11	119385	broad.mit.edu	37	chr10	88751942	88751942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatatactgtttttccttGggtattggctggattgtaaa	10	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88751942	T	T	88751942	1	4	9	0	1	0	0	0	0	0	0	0	367	1363	47	2		2	AGAP11	10	88751942	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47989	88751942	46782805	11129	19280											
AGAP11	119385	broad.mit.edu	37	chr10	88761427	88761427	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcagtcaacaatacagctCgtgttcgacaatattccttg	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88761427	A	A	88761427	1	1	9	0	1	0	0	0	0	0	0	0	367	899	31	3		3	AGAP11	10	88761427	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	9485	88761427	46773320	11130	19281											
AGAP11	119385	broad.mit.edu	37	chr10	88764112	88764112	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatacatcatcatatcacGgaaaggtgagctttttagaa	9	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88764112	T	T	88764112	2	4	9	1	0	0	0	0	0	0	0	1	367	1103	39	1		1	AGAP11	10	88764112	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2685	88764112	46770635	11131	19282											
AGAP11	119385	broad.mit.edu	37	chr10	88768355	88768355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtcacgctgacaccatcGggagcggcagagccatcccc	12	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88768355	T	T	88768355	3	4	9	1	0	0	0	0	1	0	0	0	367	1116	39	1	360	1	AGAP11	10	88768355	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4243	88768355	46766392	11132	19283											
AGAP11	119385	broad.mit.edu	37	chr10	88768375	88768375	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcggcagagccatcccCattaaacagggcatgctctt	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88768375	A	A	88768375	2	1	9	1	0	0	0	0	0	0	0	1	367	581	21	2		2	AGAP11	10	88768375	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	88768375	46766372	11133	19284											
GLUD1	2746	broad.mit.edu	37	chr10	88818952	88818952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatatttgaaggtcaaacGgccatagctgacatgattta	8	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88818952	T	T	88818952	3	4	9	1	0	0	0	0	1	0	0	0	6540	1116	39	1	335	1	GLUD1	10	88818952	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50577	88818952	46715795	11134	19285											
GLUD1	2746	broad.mit.edu	37	chr10	88820795	88820795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctcatagagtgtaggccCacattaccaaatccctgtga	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88820795	A	A	88820795	2	1	9	1	0	0	0	0	0	0	0	1	6540	581	21	2		2	GLUD1	10	88820795	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1843	88820795	46713952	11135	19286											
GLUD1	2746	broad.mit.edu	37	chr10	88827869	88827869	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcgatccaggacatctccCgctcacctgtgctcatgtct	8	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88827869	G	G	88827869	3	3	9	1	0	0	0	0	1	0	0	0	6540	652	23	4	1020	4	GLUD1	10	88827869	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7074	88827869	46706878	11136	19287											
GLUD1	2746	broad.mit.edu	37	chr10	88854253	88854253	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgctcctcgctctcccGggtcctcaggtcctccacca	7	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88854253	T	T	88854253	2	4	9	1	0	0	0	0	0	0	0	1	6540	1115	39	1		1	GLUD1	10	88854253	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26384	88854253	46680494	11137	19288											
FAM35A	54537	broad.mit.edu	37	chr10	88950213	88950213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagctagcagcgatcttGggagctctgtgtttttgtct	12	8	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88950213	T	T	88950213	1	4	9	0	1	0	0	0	0	0	0	0	5604	1363	47	2		2	FAM35A	10	88950213	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	95960	88950213	46584534	11138	19289											
FAM22D	728130	broad.mit.edu	37	chr10	89118015	89118015	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccctctgcagaatgtctGgggtcctatgttccaggaac	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89118015	T	T	89118015	1	4	9	0	1	0	0	0	0	0	0	0	5591	1363	47	2		2	FAM22D	10	89118015	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	167802	89118015	46416732	11139	19290											
PAPSS2	9060	broad.mit.edu	37	chr10	89474814	89474814	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaacttgaccacgtcCgagctgaggctgaaactctc	8	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89474814	A	A	89474814	2	1	9	1	0	0	0	0	0	0	0	1	11529	644	23	1		1	PAPSS2	10	89474814	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	356799	89474814	46059933	11140	19291											
PAPSS2	9060	broad.mit.edu	37	chr10	89503232	89503232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaggggctacaagcaccCggtcctcctactacaccctc	9	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89503232	A	A	89503232	3	1	9	1	0	0	0	0	1	0	0	0	11529	652	23	1	1367	1	PAPSS2	10	89503232	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28418	89503232	46031515	11141	19292											
ATAD1	84896	broad.mit.edu	37	chr10	89527402	89527402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatcagatttataggacGgggaaaaaatttttattttc	8	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89527402	T	T	89527402	1	4	9	0	1	0	0	0	0	0	0	0	1074	1131	39	1		1	ATAD1	10	89527402	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24170	89527402	46007345	11142	19293											
PTEN	5728	broad.mit.edu	37	chr10	89717676	89717676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattcaggacccacacgacGggaagacaagttcatgtact	9	11	2	1	rs121909235		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89717676	T	T	89717676	3	4	9	1	0	0	0	0	1	0	0	0	12844	1116	39	1	727	1	PTEN	10	89717676	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	190274	89717676	45817071	11143	19294											
PTEN	5728	broad.mit.edu	37	chr10	89720899	89720899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaaattaaacattttgtGggggttgttgacttgtatgt	11	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89720899	T	T	89720899	1	4	9	0	1	0	0	0	0	0	0	0	12844	1363	47	2		2	PTEN	10	89720899	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3223	89720899	45813848	11144	19295											
RNLS	55328	broad.mit.edu	37	chr10	90122287	90122287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accattgttgctgtatttaaGggaaataataggggtactga	11	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90122287	T	T	90122287	1	4	9	0	1	0	0	0	0	0	0	0	13616	1015	35	2		2	RNLS	10	90122287	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	401388	90122287	45412460	11145	19296											
LIPJ	142910	broad.mit.edu	37	chr10	90356677	90356677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgatgtttggatatgaccCaaaaaacttaaatatggtaa	7	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90356677	A	A	90356677	3	1	9	1	0	0	0	0	1	0	0	0	8899	594	21	2	729	2	LIPJ	10	90356677	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	234390	90356677	45178070	11146	19297											
LIPF	8513	broad.mit.edu	37	chr10	90427345	90427345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcagatgattacttattGgggatacccaaatgaagaat	10	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90427345	T	T	90427345	3	4	9	1	0	0	0	0	1	0	0	0	8895	1357	47	2	131	2	LIPF	10	90427345	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70668	90427345	45107402	11147	19298											
ANKRD22	118932	broad.mit.edu	37	chr10	90583063	90583063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttattgtggggtctgcacGggcttccaagagcagaggga	15	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90583063	T	T	90583063	3	4	9	1	0	0	0	0	1	0	0	0	651	1116	39	1	111	1	ANKRD22	10	90583063	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	155718	90583063	44951684	11148	19299											
STAMBPL1	57559	broad.mit.edu	37	chr10	90673008	90673008	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaagcaagagttagccCgaggtcaaatgcgaagtcag	12	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90673008	A	A	90673008	2	1	9	1	0	0	0	0	0	0	0	1	15369	644	23	1		1	STAMBPL1	10	90673008	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	89945	90673008	44861739	11149	19300											
STAMBPL1	57559	broad.mit.edu	37	chr10	90683002	90683002	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgttctgaatgtaagcacCgtcaacatcagacacctact	6	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90683002	A	A	90683002	1	1	9	0	1	0	0	0	0	0	0	0	15369	667	23	1		1	STAMBPL1	10	90683002	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	9994	90683002	44851745	11150	19301											
ACTA2	59	broad.mit.edu	37	chr10	90695012	90695012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtggacaatggaaggccCggcttcatcgtattcctgtt	13	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90695012	A	A	90695012	3	1	9	1	0	0	0	0	1	0	0	0	192	652	23	1	35	1	ACTA2	10	90695012	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12010	90695012	44839735	11151	19302											
STAMBPL1	57559	broad.mit.edu	37	chr10	90732887	90732887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctattttaatttttcctGggccttgcctcccaatcctc	4	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90732887	T	T	90732887	1	4	9	0	1	0	0	0	0	0	0	0	15369	1363	47	2		2	STAMBPL1	10	90732887	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37875	90732887	44801860	11152	19303											
FAS	355	broad.mit.edu	37	chr10	90770526	90770526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggatccagatctaacttGgggtggctttgtcttcttct	10	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90770526	T	T	90770526	3	4	9	1	0	0	0	0	1	0	0	0	5738	1339	47	2	544	2	FAS	10	90770526	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37639	90770526	44764221	11153	19304											
LIPA	3988	broad.mit.edu	37	chr10	90975754	90975754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaggcttgaaacttttGgaatttaacagcctaaaaag	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90975754	T	T	90975754	3	4	9	1	0	0	0	0	1	0	0	0	8892	1357	47	2	300	2	LIPA	10	90975754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	205228	90975754	44558993	11154	19305											
IFIT1B	439996	broad.mit.edu	37	chr10	91143608	91143608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccctgaattcaatactGggtacgcaatcaccgtctat	6	11	3	1	rs73369750	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91143608	T	T	91143608	3	4	9	1	0	0	0	0	1	0	0	0	7592	1348	47	2	544	2	IFIT1B	10	91143608	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	167854	91143608	44391139	11155	19306											
IFIT1B	439996	broad.mit.edu	37	chr10	91144374	91144374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtattcaccagaatgtacGggttgtggaaagtgtcagcc	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91144374	T	T	91144374	3	4	9	1	0	0	0	0	1	0	0	0	7592	1116	39	1	1310	1	IFIT1B	10	91144374	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	766	91144374	44390373	11156	19307											
IFIT5	24138	broad.mit.edu	37	chr10	91177143	91177143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattggcctatgtgaaacacCtaaaaggccaaaataaagac	7	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91177143	A	A	91177143	3	1	9	1	0	0	0	0	1	0	0	0	7595	680	24	2	193	2	IFIT5	10	91177143	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32769	91177143	44357604	11157	19308											
IFIT5	24138	broad.mit.edu	37	chr10	91177536	91177536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgattctgatagagaaGggtctgtaaagagcttttct	12	4	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91177536	T	T	91177536	3	4	9	1	0	0	0	0	1	0	0	0	7595	1000	35	2	586	2	IFIT5	10	91177536	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	393	91177536	44357211	11158	19309											
SLC16A12	387700	broad.mit.edu	37	chr10	91198778	91198778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaatgagtaaggctcccCgccaggaaaactgttcaata	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91198778	A	A	91198778	3	1	9	1	0	0	0	0	1	0	0	0	14518	652	23	1	951	1	SLC16A12	10	91198778	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21242	91198778	44335969	11159	19310											
SLC16A12	387700	broad.mit.edu	37	chr10	91222223	91222223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctggaggggaggtagacCgagctctatttacttttgcc	12	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91222223	A	A	91222223	3	1	9	1	0	0	0	0	1	0	0	0	14518	652	23	1	1461	1	SLC16A12	10	91222223	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23445	91222223	44312524	11160	19311											
PANK1	53354	broad.mit.edu	37	chr10	91353619	91353619	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcgttcatagtctcctcCgtaaatgtccttcaccagtt	5	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91353619	A	A	91353619	4	1	9	1	0	0	0	0	0	1	0	0	11510	661	23	1	374	1	PANK1	10	91353619	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131396	91353619	44181128	11161	19312											
KIF20B	9585	broad.mit.edu	37	chr10	91469085	91469085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactagtttttatttattGggggtatgttttctagggct	10	3	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91469085	T	T	91469085	1	4	9	0	1	0	0	0	0	0	0	0	8357	1363	47	2		2	KIF20B	10	91469085	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	115466	91469085	44065662	11162	19313											
ANKRD1	27063	broad.mit.edu	37	chr10	92679982	92679982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccccagggtcacagggtGggctagaagtgtcttcagat	13	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92679982	T	T	92679982	3	4	9	1	0	0	0	0	1	0	0	0	637	1348	47	2	840	2	ANKRD1	10	92679982	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1210897	92679982	42854765	11163	19314											
ANKRD1	27063	broad.mit.edu	37	chr10	92680081	92680081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaattcccctgcctcccCattgccattcttctttccag	5	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92680081	A	A	92680081	3	1	9	1	0	0	0	0	1	0	0	0	637	594	21	2	939	2	ANKRD1	10	92680081	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99	92680081	42854666	11164	19315											
PCGF5	84333	broad.mit.edu	37	chr10	93000289	93000289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagatagcaatgattgccCaaggtgtggcaaccaagttc	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93000289	A	A	93000289	3	1	9	1	0	0	0	0	1	0	0	0	11671	594	21	2	167	2	PCGF5	10	93000289	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	320208	93000289	42534458	11165	19316											
HECTD2	143279	broad.mit.edu	37	chr10	93220989	93220989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttctatatgtatatacGgttaatgtgttttcatttta	5	3	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93220989	T	T	93220989	1	4	9	0	1	0	0	0	0	0	0	0	7107	1131	39	1		1	HECTD2	10	93220989	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	220700	93220989	42313758	11166	19317											
HECTD2	143279	broad.mit.edu	37	chr10	93221010	93221010	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaatgtgttttcattttaGggaagatgtagaaaaagtta	10	1	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93221010	T	T	93221010	5	4	9	1	0	0	0	0	0	0	1	0	7107	1014	35	2	421	2	HECTD2	10	93221010	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	93221010	42313737	11167	19318											
HECTD2	143279	broad.mit.edu	37	chr10	93237912	93237912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaacatataaacgtcacCtaatttggtaatcctaatta	3	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93237912	A	A	93237912	1	1	9	0	1	0	0	0	0	0	0	0	7107	696	24	2		2	HECTD2	10	93237912	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16902	93237912	42296835	11168	19319											
TNKS2	80351	broad.mit.edu	37	chr10	93600410	93600410	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggtataacagagtgtcCgtggtggaatatctgctaca	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93600410	A	A	93600410	2	1	9	1	0	0	0	0	0	0	0	1	16444	639	23	1		1	TNKS2	10	93600410	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	362498	93600410	41934337	11169	19320											
TNKS2	80351	broad.mit.edu	37	chr10	93621773	93621773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcagctgctcttttgccGggtaaccttgggaaagtctt	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93621773	T	T	93621773	3	4	9	1	0	0	0	0	1	0	0	0	16444	1116	39	1	3401	1	TNKS2	10	93621773	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21363	93621773	41912974	11170	19321											
BTAF1	9044	broad.mit.edu	37	chr10	93699725	93699725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggtgttgatatatttaaGgagtgcaaattgggataccc	11	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93699725	T	T	93699725	3	4	9	1	0	0	0	0	1	0	0	0	1545	1000	35	2	165	2	BTAF1	10	93699725	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77952	93699725	41835022	11171	19322											
MARCH5	54708	broad.mit.edu	37	chr10	94109427	94109427	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcatttttttcctctaGggataggttgtcctgttcct	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94109427	T	T	94109427	5	4	9	1	0	0	0	0	0	0	1	0	9396	1014	35	2	571	2	MARCH5	10	94109427	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	409702	94109427	41425320	11172	19323											
IDE	3416	broad.mit.edu	37	chr10	94223743	94223743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattagctcgacgtggccCgctgaagacgatatagcctg	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94223743	A	A	94223743	3	1	9	1	0	0	0	0	1	0	0	0	7563	652	23	1	573	1	IDE	10	94223743	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114316	94223743	41311004	11173	19324											
IDE	3416	broad.mit.edu	37	chr10	94230054	94230054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggcttcaatgtgcagcCgtgacaggagctgaggtatg	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94230054	A	A	94230054	3	1	9	1	0	0	0	0	1	0	0	0	7563	652	23	1	926	1	IDE	10	94230054	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6311	94230054	41304693	11174	19325											
IDE	3416	broad.mit.edu	37	chr10	94267853	94267853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcattcaaaagtaaaaaGgtgaatcaatacttacataa	4	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94267853	T	T	94267853	1	4	9	0	1	0	0	0	0	0	0	0	7563	1015	35	2		2	IDE	10	94267853	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37799	94267853	41266894	11175	19326											
IDE	3416	broad.mit.edu	37	chr10	94267921	94267921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaaaaacataaaacctcGggctccttccttctgcccac	5	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94267921	T	T	94267921	2	4	9	1	0	0	0	0	0	0	0	1	7563	1124	39	1		1	IDE	10	94267921	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68	94267921	41266826	11176	19327											
IDE	3416	broad.mit.edu	37	chr10	94269751	94269751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgttctatggtaaactaGgtatatattatgtccataaa	6	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94269751	T	T	94269751	1	4	9	0	1	0	0	0	0	0	0	0	7563	1015	35	2		2	IDE	10	94269751	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1830	94269751	41264996	11177	19328											
IDE	3416	broad.mit.edu	37	chr10	94294462	94294462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtattcattttctttagGgtatttctttgttcccaaaa	6	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94294462	T	T	94294462	3	4	9	1	0	0	0	0	1	0	0	0	7563	1232	43	2	2787	2	IDE	10	94294462	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24711	94294462	41240285	11178	19329											
KIF11	3832	broad.mit.edu	37	chr10	94381190	94381190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgagatcttgctgcagccCgtgagaaaaatggagtgtat	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94381190	A	A	94381190	3	1	9	1	0	0	0	0	1	0	0	0	8342	652	23	1	1215	1	KIF11	10	94381190	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86728	94381190	41153557	11179	19330											
KIF11	3832	broad.mit.edu	37	chr10	94410163	94410163	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttcttcttttaggatgtGgatgtagaagaggcagttct	12	4	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94410163	T	T	94410163	2	4	9	1	0	0	0	0	0	0	0	1	8342	1335	47	2		2	KIF11	10	94410163	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28973	94410163	41124584	11180	19331											
EXOC6	54536	broad.mit.edu	37	chr10	94594491	94594491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaaaattaggggcctgtcGagcgatgttggaagaagaaa	15	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94594491	T	T	94594491	3	4	9	1	0	0	0	0	1	0	0	0	5350	1073	37	3		3	EXOC6	10	94594491	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	184328	94594491	40940256	11181	19332											
EXOC6	54536	broad.mit.edu	37	chr10	94653170	94653170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagttagatgcttgtatcCgtaatcatgacaaggaaatt	8	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94653170	A	A	94653170	3	1	9	1	0	0	0	0	1	0	0	0	5350	652	23	1	262	1	EXOC6	10	94653170	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58679	94653170	40881577	11182	19333											
CYP26A1	1592	broad.mit.edu	37	chr10	94834144	94834144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcgggcggcccaccgtacGggtgatgggcgcggacaatg	18	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94834144	T	T	94834144	3	4	9	1	0	0	0	0	1	0	0	0	4188	1116	39	1	275	1	CYP26A1	10	94834144	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	180974	94834144	40700603	11183	19334											
CYP26A1	1592	broad.mit.edu	37	chr10	94836370	94836370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaacaacttaaatacatcGggtgtgttattaaggagacc	10	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94836370	T	T	94836370	3	4	9	1	0	0	0	0	1	0	0	0	4188	1116	39	1	1091	1	CYP26A1	10	94836370	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2226	94836370	40698377	11184	19335											
MYOF	26509	broad.mit.edu	37	chr10	95095654	95095654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaggtggattttaaacGggaccaacacacatcttact	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95095654	T	T	95095654	1	4	9	0	1	0	0	0	0	0	0	0	10183	1131	39	1		1	MYOF	10	95095654	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	259284	95095654	40439093	11185	19336											
MYOF	26509	broad.mit.edu	37	chr10	95115479	95115479	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctcatccccatcttcGgtagtgtctgccccctgaag	7	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95115479	T	T	95115479	2	4	9	1	0	0	0	0	0	0	0	1	10183	1103	39	1		1	MYOF	10	95115479	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19825	95115479	40419268	11186	19337											
MYOF	26509	broad.mit.edu	37	chr10	95121287	95121287	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctggaggacaagtcaactCgctgggtgatgctgctttat	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95121287	A	A	95121287	4	1	9	1	0	0	0	0	0	1	0	0	10183	893	31	3	3397	3	MYOF	10	95121287	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5808	95121287	40413460	11187	19338											
MYOF	26509	broad.mit.edu	37	chr10	95148826	95148826	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataggggtctgggaatccCgtgtactctctggggcttcc	13	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95148826	A	A	95148826	2	1	9	1	0	0	0	0	0	0	0	1	10183	639	23	1		1	MYOF	10	95148826	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27539	95148826	40385921	11188	19339											
MYOF	26509	broad.mit.edu	37	chr10	95155888	95155888	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcttgttctagatctgttGagtgacttaccttccacttc	7	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95155888	C	C	95155888	1	2	9	0	1	0	0	0	0	0	0	0	10183	1305	45	4		4	MYOF	10	95155888	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7062	95155888	40378859	11189	19340											
MYOF	26509	broad.mit.edu	37	chr10	95211878	95211879	+	Missense_Mutation	DNP	CC	AA	AA													gaaaagtccagtggtataccCctcaagtcaaactccaaaat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	95211879	AA	AA	95211878	3	1	9	1	0	0	0	0	1	0	0	0	10183	622	22	2	6228	2	MYOF	10	95211878	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	55990	95211878	40322869	11190	19341											
CEP55	55165	broad.mit.edu	37	chr10	95263134	95263134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaaaaccaatacactcCgtttatcacaggtgctaatc	5	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95263134	A	A	95263134	3	1	9	1	0	0	0	0	1	0	0	0	3285	652	23	1	454	1	CEP55	10	95263134	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51256	95263134	40271613	11191	19342											
CEP55	55165	broad.mit.edu	37	chr10	95276875	95276875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttgtattcacaaagaaGggcagatgtgcaacatctgg	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95276875	T	T	95276875	3	4	9	1	0	0	0	0	1	0	0	0	3285	1000	35	2	881	2	CEP55	10	95276875	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13741	95276875	40257872	11192	19343											
GPR120	338557	broad.mit.edu	37	chr10	95347194	95347194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgtccctcttcttctGggtggtggccttcacatttg	11	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95347194	T	T	95347194	3	4	9	1	0	0	0	0	1	0	0	0	6701	1357	47	2	976	2	GPR120	10	95347194	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70319	95347194	40187553	11193	19344											
PDE6C	5146	broad.mit.edu	37	chr10	95380456	95380456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaacctgctggcaacccCgatcgtggtgggcaaggagg	15	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95380456	A	A	95380456	3	1	9	1	0	0	0	0	1	0	0	0	11741	652	23	1	554	1	PDE6C	10	95380456	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33262	95380456	40154291	11194	19345											
LGI1	9211	broad.mit.edu	37	chr10	95518125	95518125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatctcattgtaaggccCgtaagcattttgatatctaa	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95518125	A	A	95518125	1	1	9	0	1	0	0	0	0	0	0	0	8823	667	23	1		1	LGI1	10	95518125	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	137669	95518125	40016622	11195	19346											
PLCE1	51196	broad.mit.edu	37	chr10	95987167	95987167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaatgctgctggaacatGggcaactacaacgctgtcat	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95987167	T	T	95987167	3	4	9	1	0	0	0	0	1	0	0	0	12129	1348	47	2	2214	2	PLCE1	10	95987167	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	469042	95987167	39547580	11196	19347											
PLCE1	51196	broad.mit.edu	37	chr10	95987301	95987301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagggactcacctttaccCaagccaggtaactggaaatg	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95987301	A	A	95987301	1	1	9	0	1	0	0	0	0	0	0	0	12129	609	21	2		2	PLCE1	10	95987301	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	95987301	39547446	11197	19348											
PLCE1	51196	broad.mit.edu	37	chr10	96084129	96084129	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgcaaagccaaatattcCtacagcatcctgagcaaccc	5	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96084129	A	A	96084129	2	1	9	1	0	0	0	0	0	0	0	1	12129	668	24	2		2	PLCE1	10	96084129	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	96828	96084129	39450618	11198	19349											
NOC3L	64318	broad.mit.edu	37	chr10	96094400	96094400	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcccatacctttattttGgggtttgaagattcaacagg	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96094400	T	T	96094400	2	4	9	1	0	0	0	0	0	0	0	1	10609	1335	47	2		2	NOC3L	10	96094400	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10271	96094400	39440347	11199	19350											
HELLS	3070	broad.mit.edu	37	chr10	96322494	96322494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagccaggtaaatatcCttattctagttttgaagaat	8	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96322494	A	A	96322494	1	1	9	0	1	0	0	0	0	0	0	0	7113	696	24	2		2	HELLS	10	96322494	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	228094	96322494	39212253	11200	19351											
CYP2C19	1557	broad.mit.edu	37	chr10	96535263	96535263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtgttcaagaggaagccCgctgccttgtggaggagttg	15	9	1	1	rs142974781		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96535263	A	A	96535263	3	1	9	1	0	0	0	0	1	0	0	0	4199	652	23	1	458	1	CYP2C19	10	96535263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	212769	96535263	38999484	11201	19352											
CYP2C9	1559	broad.mit.edu	37	chr10	96698377	96698377	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacacaccgaattagcatGgagtgttataaaaggcttgg	12	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96698377	T	T	96698377	1	4	9	0	1	0	0	0	0	0	0	0	4201	1363	47	2		2	CYP2C9	10	96698377	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	163114	96698377	38836370	11202	19353											
CYP2C9	1559	broad.mit.edu	37	chr10	96698396	96698396	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtgttataaaaggcttGgagtgcaagctcatggttgt	14	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96698396	T	T	96698396	1	4	9	0	1	0	0	0	0	0	0	0	4201	1363	47	2		2	CYP2C9	10	96698396	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	96698396	38836351	11203	19354											
CYP2C9	1559	broad.mit.edu	37	chr10	96701748	96701748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggaagaggcattttccCactggctgaaagagctaaca	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96701748	A	A	96701748	3	1	9	1	0	0	0	0	1	0	0	0	4201	594	21	2	308	2	CYP2C9	10	96701748	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3352	96701748	38832999	11204	19355											
CYP2C8	1558	broad.mit.edu	37	chr10	96818129	96818129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcaatcgataaagtccCgaggattgttaacatccagt	10	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96818129	A	A	96818129	3	1	9	1	0	0	0	0	1	0	0	0	4200	652	23	1	710	1	CYP2C8	10	96818129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116381	96818129	38716618	11205	19356											
SORBS1	10580	broad.mit.edu	37	chr10	97158838	97158838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagtgctcttcaccaccCgcctactgtcatcctttgct	6	17	3	1	rs140103802	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97158838	A	A	97158838	3	1	9	1	0	0	0	0	1	0	0	0	15041	652	23	1	3069	1	SORBS1	10	97158838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	340709	97158838	38375909	11206	19357											
ALDH18A1	5832	broad.mit.edu	37	chr10	97366501	97366501	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccttttggaaaattcccGggttttcctggctcttttca	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97366501	T	T	97366501	1	4	9	0	1	0	0	0	0	0	0	0	489	1131	39	1		1	ALDH18A1	10	97366501	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	207663	97366501	38168246	11207	19358											
ALDH18A1	5832	broad.mit.edu	37	chr10	97371130	97371130	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtccccatactcagttcGgagtgacttcacttcggagg	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97371130	T	T	97371130	2	4	9	1	0	0	0	0	0	0	0	1	489	1124	39	1		1	ALDH18A1	10	97371130	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4629	97371130	38163617	11208	19359											
ALDH18A1	5832	broad.mit.edu	37	chr10	97385174	97385174	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatctcatcacgctggtcCgtcaacagatcagccagatg	10	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97385174	A	A	97385174	2	1	9	1	0	0	0	0	0	0	0	1	489	639	23	1		1	ALDH18A1	10	97385174	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14044	97385174	38149573	11209	19360											
ALDH18A1	5832	broad.mit.edu	37	chr10	97413099	97413099	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagaagatgttggttgaaGggctggaacccacagcggta	16	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97413099	T	T	97413099	2	4	9	1	0	0	0	0	0	0	0	1	489	987	35	2		2	ALDH18A1	10	97413099	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27925	97413099	38121648	11210	19361											
TCTN3	26123	broad.mit.edu	37	chr10	97423878	97423878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggcacaggataaggatGggagagactgagcatttttg	15	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97423878	T	T	97423878	2	4	9	1	0	0	0	0	0	0	0	1	15846	1335	47	2		2	TCTN3	10	97423878	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10779	97423878	38110869	11211	19362											
TCTN3	26123	broad.mit.edu	37	chr10	97423944	97423944	+	Missense_Mutation	SNP	G	T	T													actttgaagggaaagaagtcGaatggccatttccagtccat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97423944	T	T	97423944	3	4	9	1	0	0	0	0	1	0	0	0	15846	1049	37	3	123	3	TCTN3	10	97423944	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66	97423944	38110803	11212	19363	131	2									
TCTN3	26123	broad.mit.edu	37	chr10	97423951	97423951	+	Missense_Mutation	SNP	C	A	A													agggaaagaagtcgaatggcCatttccagtccattttgggt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97423951	A	A	97423951	3	1	9	1	0	0	0	0	1	0	0	0	15846	595	21	2	130	2	TCTN3	10	97423951	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	97423951	38110796	11213	19364	131	2									
CC2D2B	387707	broad.mit.edu	37	chr10	97779364	97779364	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggattctgccacttcattGagtagtaagactgtaaaatt	9	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97779364	T	T	97779364	1	4	9	0	1	0	0	0	0	0	0	0	2755	1305	45	3		3	CC2D2B	10	97779364	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	355413	97779364	37755383	11214	19365											
CC2D2B	387707	broad.mit.edu	37	chr10	97779407	97779407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccttccttaccaacaatGggccttgtgttcctatggac	8	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97779407	T	T	97779407	1	4	9	0	1	0	0	0	0	0	0	0	2755	1363	47	2		2	CC2D2B	10	97779407	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43	97779407	37755340	11215	19366											
CC2D2B	387707	broad.mit.edu	37	chr10	97791546	97791546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattacccagttgtaatgtGggtttatgtgctgttctgtc	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97791546	T	T	97791546	1	4	9	0	1	0	0	0	0	0	0	0	2755	1363	47	2		2	CC2D2B	10	97791546	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12139	97791546	37743201	11216	19367											
CC2D2B	387707	broad.mit.edu	37	chr10	97791582	97791582	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctttgatccaggtcacGggatttcccatccagatgcc	9	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97791582	T	T	97791582	2	4	9	1	0	0	0	0	0	0	0	1	2755	1103	39	1		1	CC2D2B	10	97791582	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	97791582	37743165	11217	19368											
CCNJ	54619	broad.mit.edu	37	chr10	97804127	97804127	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagactcgagttgccgcgtcGggctgggcgcgccgccgggt	18	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97804127	T	T	97804127	1	4	9	0	1	0	0	0	0	0	0	0	2958	1131	39	1		1	CCNJ	10	97804127	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	12545	97804127	37730620	11218	19369											
CCNJ	54619	broad.mit.edu	37	chr10	97810065	97810065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcagttaagtctcagacGgtattttgctgacttgattg	9	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97810065	T	T	97810065	3	4	9	1	0	0	0	0	1	0	0	0	2958	1116	39	1	128	1	CCNJ	10	97810065	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5938	97810065	37724682	11219	19370											
ZNF518A	9849	broad.mit.edu	37	chr10	97917517	97917517	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaggtgctgcaaaggacGgtactgctaatttgcagccc	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97917517	T	T	97917517	3	4	9	1	0	0	0	0	1	0	0	0	18089	1116	39	1	1440	1	ZNF518A	10	97917517	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107452	97917517	37617230	11220	19371											
ZNF518A	9849	broad.mit.edu	37	chr10	97919439	97919439	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactgagctgcttaagccCaaattagtccaaaatagtac	6	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97919439	A	A	97919439	2	1	9	1	0	0	0	0	0	0	0	1	18089	581	21	2		2	ZNF518A	10	97919439	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1922	97919439	37615308	11221	19372											
DNTT	1791	broad.mit.edu	37	chr10	98087322	98087322	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtctgggcatttcttccGgatgctttcgtcaccatgac	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98087322	T	T	98087322	2	4	9	1	0	0	0	0	0	0	0	1	4720	1103	39	1		1	DNTT	10	98087322	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	167883	98087322	37447425	11222	19373											
OPALIN	93377	broad.mit.edu	37	chr10	98111146	98111146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatagttaccgtttctttccCacctgtgacaggagaggacg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98111146	A	A	98111146	3	1	9	1	0	0	0	0	1	0	0	0	10967	594	21	2	380	2	OPALIN	10	98111146	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23824	98111146	37423601	11223	19374											
TLL2	7093	broad.mit.edu	37	chr10	98154990	98154990	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttattgatagagccatcGgacacaaacttcatccacag	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98154990	T	T	98154990	2	4	9	1	0	0	0	0	0	0	0	1	16069	1103	39	1		1	TLL2	10	98154990	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43844	98154990	37379757	11224	19375											
TLL2	7093	broad.mit.edu	37	chr10	98155083	98155083	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatcagggcactctcttcCgtggggccatcccggacttc	11	16	2	0	rs151335014		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98155083	A	A	98155083	2	1	9	1	0	0	0	0	0	0	0	1	16069	639	23	1		1	TLL2	10	98155083	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	98155083	37379664	11225	19376											
TLL2	7093	broad.mit.edu	37	chr10	98164969	98164969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcactcctctcttaacGgtgtctaaagtcaacttacc	4	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98164969	T	T	98164969	1	4	9	0	1	0	0	0	0	0	0	0	16069	1131	39	1		1	TLL2	10	98164969	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9886	98164969	37369778	11226	19377											
TLL2	7093	broad.mit.edu	37	chr10	98165021	98165021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttctccagtaaccatccCggacctccacgtaatcatac	4	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98165021	A	A	98165021	3	1	9	1	0	0	0	0	1	0	0	0	16069	652	23	1	1860	1	TLL2	10	98165021	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	98165021	37369726	11227	19378											
TLL2	7093	broad.mit.edu	37	chr10	98273189	98273189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagacccgccccatagacGgtagtgcaggcttgcccacc	13	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98273189	T	T	98273189	1	4	9	0	1	0	0	0	0	0	0	0	16069	1131	39	1		1	TLL2	10	98273189	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	108168	98273189	37261558	11228	19379											
TM9SF3	56889	broad.mit.edu	37	chr10	98336370	98336370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatccaaattgcattgtaaGgactattaaggtttacttac	6	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98336370	T	T	98336370	1	4	9	0	1	0	0	0	0	0	0	0	16102	1015	35	2		2	TM9SF3	10	98336370	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	63181	98336370	37198377	11229	19380											
PIK3AP1	118788	broad.mit.edu	37	chr10	98355346	98355346	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggaatcagcgtcctctGggtggaacaggtggaggagg	19	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98355346	T	T	98355346	2	4	9	1	0	0	0	0	0	0	0	1	12003	1335	47	2		2	PIK3AP1	10	98355346	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18976	98355346	37179401	11230	19381											
PIK3AP1	118788	broad.mit.edu	37	chr10	98376435	98376435	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttctctctctgtcttcGggtgatgctgtctcttagcc	9	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98376435	T	T	98376435	2	4	9	1	0	0	0	0	0	0	0	1	12003	1124	39	1		1	PIK3AP1	10	98376435	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21089	98376435	37158312	11231	19382											
PIK3AP1	118788	broad.mit.edu	37	chr10	98383164	98383164	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggagctattgttacacttGgaaatcactgacctatgaac	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98383164	C	C	98383164	1	2	9	0	1	0	0	0	0	0	0	0	12003	1363	47	4		4	PIK3AP1	10	98383164	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6729	98383164	37151583	11232	19383											
PIK3AP1	118788	broad.mit.edu	37	chr10	98388193	98388193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatagagtccttagtggccCgagagaaaccatctccaggg	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98388193	A	A	98388193	3	1	9	1	0	0	0	0	1	0	0	0	12003	652	23	1	1020	1	PIK3AP1	10	98388193	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5029	98388193	37146554	11233	19384											
C10orf12	26148	broad.mit.edu	37	chr10	98708781	98708781	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagacagtccctgggtctcCgaccccaatattcccctagt	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98708781	A	A	98708781	1	1	9	0	1	0	0	0	0	0	0	0	1600	667	23	1		1	C10orf12	10	98708781	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	320588	98708781	36825966	11234	19385											
C10orf12	26148	broad.mit.edu	37	chr10	98742490	98742490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttttactgatgaaaaccCcagtgaaactgaggaaagtg	9	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98742490	A	A	98742490	3	1	9	1	0	0	0	0	1	0	0	0	1600	623	22	2	1345	2	C10orf12	10	98742490	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33709	98742490	36792257	11235	19386											
C10orf12	26148	broad.mit.edu	37	chr10	98744056	98744056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgatgtcagccccggccCtaattctgaagacagcatag	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98744056	A	A	98744056	3	1	9	1	0	0	0	0	1	0	0	0	1600	681	24	2	2911	2	C10orf12	10	98744056	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1566	98744056	36790691	11236	19387											
C10orf12	26148	broad.mit.edu	37	chr10	98744139	98744139	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccactccagccagtaccCggattcttagaaaatattcc	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98744139	A	A	98744139	2	1	9	1	0	0	0	0	0	0	0	1	1600	643	23	1		1	C10orf12	10	98744139	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	98744139	36790608	11237	19388											
SLIT1	6585	broad.mit.edu	37	chr10	98762681	98762681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaggtttcggatgcaacCgtggaagccggtgccgttga	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98762681	A	A	98762681	3	1	9	1	0	0	0	0	1	0	0	0	14853	652	23	1	682	1	SLIT1	10	98762681	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18542	98762681	36772066	11238	19389											
SLIT1	6585	broad.mit.edu	37	chr10	98763897	98763897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatggtcatggggctccCgccatcaatggagagattca	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98763897	A	A	98763897	3	1	9	1	0	0	0	0	1	0	0	0	14853	652	23	1	827	1	SLIT1	10	98763897	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1216	98763897	36770850	11239	19390											
SLIT1	6585	broad.mit.edu	37	chr10	98763960	98763960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacggtgtggaattgccCatcgttgatcgtctcagcac	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98763960	A	A	98763960	3	1	9	1	0	0	0	0	1	0	0	0	14853	594	21	2	890	2	SLIT1	10	98763960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63	98763960	36770787	11240	19391											
SLIT1	6585	broad.mit.edu	37	chr10	98923186	98923186	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaccacgttccactgctcCaatctggttctccatcagct	6	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98923186	A	A	98923186	4	1	9	1	0	0	0	0	0	1	0	0	14853	603	21	2	4452	2	SLIT1	10	98923186	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	159226	98923186	36611561	11241	19392											
RRP12	23223	broad.mit.edu	37	chr10	99126519	99126519	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcacctttgccctgggcGggctcctcctcctcctcctc	8	20	1	0	rs139760006		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99126519	T	T	99126519	2	4	9	1	0	0	0	0	0	0	0	1	13797	1103	39	1		1	RRP12	10	99126519	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	203333	99126519	36408228	11242	19393											
RRP12	23223	broad.mit.edu	37	chr10	99160877	99160877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctgaagaagcggctgcGggcggcctgacggtggcggc	20	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99160877	T	T	99160877	3	4	9	1	0	0	0	0	1	0	0	0	13797	1116	39	1	3917	1	RRP12	10	99160877	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34358	99160877	36373870	11243	19394											
EXOSC1	51013	broad.mit.edu	37	chr10	99196230	99196230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaagaattcgggttgtactCgggctactttccggaattct	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99196230	A	A	99196230	3	1	9	1	0	0	0	0	1	0	0	0	5355	884	31	3	31	3	EXOSC1	10	99196230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35353	99196230	36338517	11244	19395											
EXOSC1	51013	broad.mit.edu	37	chr10	99198330	99198330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcctcccaaagtactGggattacgggtgtgtgtgac	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99198330	T	T	99198330	1	4	9	0	1	0	0	0	0	0	0	0	5355	1363	47	2		2	EXOSC1	10	99198330	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2100	99198330	36336417	11245	19396											
EXOSC1	51013	broad.mit.edu	37	chr10	99202994	99202994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtcaggaccaacttacCttacaggttacaatagctcc	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99202994	A	A	99202994	3	1	9	1	0	0	0	0	1	0	0	0	5355	695	24	2	389	2	EXOSC1	10	99202994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4664	99202994	36331753	11246	19397											
EXOSC1	51013	broad.mit.edu	37	chr10	99203015	99203015	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacaggttacaatagctccCacatctggcagtaactggga	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99203015	G	G	99203015	2	3	9	1	0	0	0	0	0	0	0	1	5355	581	21	4		4	EXOSC1	10	99203015	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	99203015	36331732	11247	19398											
ZDHHC16	84287	broad.mit.edu	37	chr10	99212232	99212232	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttaccccaagccagccCgaacacaccactgcagcatc	6	18	0	0	rs138262030	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99212232	A	A	99212232	2	1	9	1	0	0	0	0	0	0	0	1	17732	644	23	1		1	ZDHHC16	10	99212232	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9217	99212232	36322515	11248	19399											
MMS19	64210	broad.mit.edu	37	chr10	99236755	99236755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggttactatactgtccCacagcacagaaagtgtgggc	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99236755	A	A	99236755	1	1	9	0	1	0	0	0	0	0	0	0	9766	609	21	2		2	MMS19	10	99236755	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24523	99236755	36297992	11249	19400											
DHDPSL	112817	broad.mit.edu	37	chr10	99371273	99371273	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctgctttgcaggtgaccCggcgctttgggatcccaggg	15	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99371273	G	G	99371273	3	3	9	1	0	0	0	0	1	0	0	0	4520	643	23	4	867	4	DHDPSL	10	99371273	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134518	99371273	36163474	11250	19401											
PI4K2A	55361	broad.mit.edu	37	chr10	99433422	99433422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgattgtcgagacggccCgttcccaccagcggtcttct	11	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99433422	A	A	99433422	3	1	9	1	0	0	0	0	1	0	0	0	11966	652	23	1	1397	1	PI4K2A	10	99433422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62149	99433422	36101325	11251	19402											
HPS1	3257	broad.mit.edu	37	chr10	100183445	100183445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgccgagggaagctcgggCtgcgtgaaggaagtacgggc	18	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100183445	T	T	100183445	1	4	9	0	1	0	0	0	0	0	0	0	7406	812	28	4		4	HPS1	10	100183445	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	750023	100183445	35351302	11252	19403											
HPS1	3257	broad.mit.edu	37	chr10	100202907	100202907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcattctctgactgccCgaacttcagccggagactct	7	15	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100202907	A	A	100202907	3	1	9	1	0	0	0	0	1	0	0	0	7406	652	23	1	2121	1	HPS1	10	100202907	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19462	100202907	35331840	11253	19404											
HPSE2	60495	broad.mit.edu	37	chr10	100401680	100401680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccatcaccttgaccaccCggccatcaatgtagcaactg	7	15	2	1	rs140694252	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100401680	A	A	100401680	3	1	9	1	0	0	0	0	1	0	0	0	7412	652	23	1	818	1	HPSE2	10	100401680	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	198773	100401680	35133067	11254	19405											
HPSE2	60495	broad.mit.edu	37	chr10	100904023	100904023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagattactgtaagtattGgagaattgctcctttagaag	10	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100904023	T	T	100904023	2	4	9	1	0	0	0	0	0	0	0	1	7412	1335	47	2		2	HPSE2	10	100904023	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	502343	100904023	34630724	11255	19406											
GOT1	2805	broad.mit.edu	37	chr10	101163380	101163380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaccacagtcagattccCgactctctcatctaaagaga	5	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101163380	A	A	101163380	3	1	9	1	0	0	0	0	1	0	0	0	6643	652	23	1	448	1	GOT1	10	101163380	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	259357	101163380	34371367	11256	19407											
GOT1	2805	broad.mit.edu	37	chr10	101180552	101180552	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagggatggcagtcatcCgtgcgatatgctggagaatg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101180552	A	A	101180552	2	1	9	1	0	0	0	0	0	0	0	1	6643	639	23	1		1	GOT1	10	101180552	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17172	101180552	34354195	11257	19408											
NKX2-3	159296	broad.mit.edu	37	chr10	101292905	101292905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgatgttaccaagccCggtcacctccacccctttct	6	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101292905	A	A	101292905	3	1	9	1	0	0	0	0	1	0	0	0	10546	652	23	1	19	1	NKX2-3	10	101292905	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	112353	101292905	34241842	11258	19409											
ENTPD7	57089	broad.mit.edu	37	chr10	101460753	101460753	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgtggcatggcttggtcGgtactaactcagagattcaa	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101460753	T	T	101460753	2	4	9	1	0	0	0	0	0	0	0	1	5186	1103	39	1		1	ENTPD7	10	101460753	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	167848	101460753	34073994	11259	19410											
COX15	1355	broad.mit.edu	37	chr10	101476172	101476172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaggaaggggaattctcCgagagaggaagtagagcact	14	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101476172	A	A	101476172	3	1	9	1	0	0	0	0	1	0	0	0	3796	652	23	1	276	1	COX15	10	101476172	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15419	101476172	34058575	11260	19411											
COX15	1355	broad.mit.edu	37	chr10	101489382	101489382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccatcggcccaccaccCgctcagcagcctttgaggga	12	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101489382	A	A	101489382	3	1	9	1	0	0	0	0	1	0	0	0	3796	652	23	1	1134	1	COX15	10	101489382	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13210	101489382	34045365	11261	19412											
CUTC	51076	broad.mit.edu	37	chr10	101499476	101499476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatattacaggtgctgatcGgattgaattatgttctggtt	10	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101499476	T	T	101499476	3	4	9	1	0	0	0	0	1	0	0	0	4096	1116	39	1	153	1	CUTC	10	101499476	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10094	101499476	34035271	11262	19413											
CUTC	51076	broad.mit.edu	37	chr10	101514321	101514321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaatctacaaaggatcCttgagggttcaggtgctaca	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101514321	A	A	101514321	3	1	9	1	0	0	0	0	1	0	0	0	4096	681	24	2	667	2	CUTC	10	101514321	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14845	101514321	34020426	11263	19414											
CUTC	51076	broad.mit.edu	37	chr10	101514361	101514361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattccactgttctgctcGgtctactagagactcgggaa	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101514361	T	T	101514361	3	4	9	1	0	0	0	0	1	0	0	0	4096	1116	39	1	707	1	CUTC	10	101514361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40	101514361	34020386	11264	19415											
ABCC2	1244	broad.mit.edu	37	chr10	101560168	101560168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatctcctttgcaagtgacCgtgacacatatttgtggatt	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101560168	A	A	101560168	3	1	9	1	0	0	0	0	1	0	0	0	53	652	23	1	1091	1	ABCC2	10	101560168	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45807	101560168	33974579	11265	19416											
ABCC2	1244	broad.mit.edu	37	chr10	101567870	101567870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacattttctgtttatgtcCtggtggatagcaacaatatt	7	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101567870	A	A	101567870	3	1	9	1	0	0	0	0	1	0	0	0	53	680	24	2	1749	2	ABCC2	10	101567870	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7702	101567870	33966877	11266	19417											
ABCC2	1244	broad.mit.edu	37	chr10	101590219	101590219	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctattcagctggcagccctCgtcagctctatatttccact	6	14	4	0	rs17222730		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101590219	A	A	101590219	1	1	9	0	1	0	0	0	0	0	0	0	53	899	31	3		3	ABCC2	10	101590219	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22349	101590219	33944528	11267	19418											
ABCC2	1244	broad.mit.edu	37	chr10	101595815	101595815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggatgcctcatgactgcGggactggctgattctttact	13	9	2	2	rs17222709		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101595815	T	T	101595815	1	4	9	0	1	0	0	0	0	0	0	0	53	1131	39	1		1	ABCC2	10	101595815	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5596	101595815	33938932	11268	19419											
ABCC2	1244	broad.mit.edu	37	chr10	101611278	101611278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaatggtcctagacaacGggaagattatagagtgcggc	15	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101611278	T	T	101611278	3	4	9	1	0	0	0	0	1	0	0	0	53	1116	39	1	4654	1	ABCC2	10	101611278	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15463	101611278	33923469	11269	19420											
DNMBP	23268	broad.mit.edu	37	chr10	101639928	101639928	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcttctggcaagacccCgaggtaaaggatacagccat	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101639928	A	A	101639928	2	1	9	1	0	0	0	0	0	0	0	1	4714	639	23	1		1	DNMBP	10	101639928	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28650	101639928	33894819	11270	19421											
DNMBP	23268	broad.mit.edu	37	chr10	101639978	101639978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaaggtcagggtgctgcCgctgttctggcgtgggaacc	17	9	2	1	rs148004684	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101639978	A	A	101639978	3	1	9	1	0	0	0	0	1	0	0	0	4714	652	23	1	603	1	DNMBP	10	101639978	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	101639978	33894769	11271	19422											
DNMBP	23268	broad.mit.edu	37	chr10	101715399	101715399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtacagggacgaggtggcGgtggccttagggcctttctc	17	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101715399	T	T	101715399	3	4	9	1	0	0	0	0	1	0	0	0	4714	1116	39	1	2957	1	DNMBP	10	101715399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75421	101715399	33819348	11272	19423											
DNMBP	23268	broad.mit.edu	37	chr10	101715755	101715755	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaggacttgattgtctGggtttgactacccttgaagc	12	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101715755	T	T	101715755	2	4	9	1	0	0	0	0	0	0	0	1	4714	1335	47	2		2	DNMBP	10	101715755	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	356	101715755	33818992	11273	19424											
DNMBP	23268	broad.mit.edu	37	chr10	101716077	101716077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccacgcctgggcttctcGggggccctcctgcggtgtcc	13	17	1	0	rs143875074		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101716077	T	T	101716077	3	4	9	1	0	0	0	0	1	0	0	0	4714	1116	39	1	3635	1	DNMBP	10	101716077	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	322	101716077	33818670	11274	19425											
CPN1	1369	broad.mit.edu	37	chr10	101816854	101816854	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggggaaacttgtcgcaactCagttccagcgtgatctcaaa	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101816854	A	A	101816854	2	1	9	1	0	0	0	0	0	0	0	1	3841	813	29	3		3	CPN1	10	101816854	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	100777	101816854	33717893	11275	19426											
CWF19L1	55280	broad.mit.edu	37	chr10	101996736	101996736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggaatgacctgggggttGgggagacaggagaaattcct	16	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101996736	T	T	101996736	1	4	9	0	1	0	0	0	0	0	0	0	4104	1363	47	2		2	CWF19L1	10	101996736	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	179882	101996736	33538011	11276	19427											
CWF19L1	55280	broad.mit.edu	37	chr10	102005576	102005576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtttgcgaggctgctttGgatgaggagaagatttgcta	16	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102005576	T	T	102005576	3	4	9	1	0	0	0	0	1	0	0	0	4104	1348	47	2	696	2	CWF19L1	10	102005576	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8840	102005576	33529171	11277	19428											
PKD2L1	9033	broad.mit.edu	37	chr10	102048138	102048138	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcatagactttgctccGggagtgcctcacacttaact	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102048138	T	T	102048138	1	4	9	0	1	0	0	0	0	0	0	0	12062	1131	39	1		1	PKD2L1	10	102048138	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	42562	102048138	33486609	11278	19429											
PKD2L1	9033	broad.mit.edu	37	chr10	102048185	102048185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacgttggaatctcaccacGggagagtctcctctcctcta	8	14	4	1	rs151301902	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102048185	T	T	102048185	3	4	9	1	0	0	0	0	1	0	0	0	12062	1116	39	1	35	1	PKD2L1	10	102048185	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47	102048185	33486562	11279	19430											
PKD2L1	9033	broad.mit.edu	37	chr10	102053046	102053046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcaatcacctgtttcaGgaggtcagaaagttgcagct	11	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102053046	T	T	102053046	3	4	9	1	0	0	0	0	1	0	0	0	12062	991	35	2	695	2	PKD2L1	10	102053046	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4861	102053046	33481701	11280	19431											
SEC31B	25956	broad.mit.edu	37	chr10	102265201	102265201	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtgcttgtgccacttgctCtggcacctgcagtggtggga	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102265201	A	A	102265201	4	1	9	1	0	0	0	0	0	1	0	0	14112	922	32	3	2511	3	SEC31B	10	102265201	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	212155	102265201	33269546	11281	19432											
HIF1AN	55662	broad.mit.edu	37	chr10	102296024	102296024	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggaagatggagagaaaggcGaggagatacggaacttaggg	19	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102296024	C	C	102296024	1	2	9	0	1	0	0	0	0	0	0	0	7171	1073	37	4		4	HIF1AN	10	102296024	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30823	102296024	33238723	11282	19433											
HIF1AN	55662	broad.mit.edu	37	chr10	102305734	102305734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgactacgagaggttccCtaatttccaaaatgtggttg	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102305734	A	A	102305734	3	1	9	1	0	0	0	0	1	0	0	0	7171	681	24	2	776	2	HIF1AN	10	102305734	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9710	102305734	33229013	11283	19434											
FAM178A	55719	broad.mit.edu	37	chr10	102684190	102684190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaactacctttactttccCgtgttccaagtgctggttcc	6	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102684190	A	A	102684190	3	1	9	1	0	0	0	0	1	0	0	0	5548	652	23	1	1450	1	FAM178A	10	102684190	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	378456	102684190	32850557	11284	19435											
FAM178A	55719	broad.mit.edu	37	chr10	102697263	102697263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaacttattaagatttacCgtgtgtattattggttgcta	7	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102697263	A	A	102697263	1	1	9	0	1	0	0	0	0	0	0	0	5548	667	23	1		1	FAM178A	10	102697263	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13073	102697263	32837484	11285	19436											
FAM178A	55719	broad.mit.edu	37	chr10	102706872	102706872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggttggtacagctggtccCtaattggacatcacgtggaa	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102706872	A	A	102706872	3	1	9	1	0	0	0	0	1	0	0	0	5548	681	24	2	3065	2	FAM178A	10	102706872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9609	102706872	32827875	11286	19437											
FAM178A	55719	broad.mit.edu	37	chr10	102719243	102719243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaataatccagaactgtcGgcctactcaggtgtcatttt	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102719243	T	T	102719243	3	4	9	1	0	0	0	0	1	0	0	0	5548	1116	39	1	3550	1	FAM178A	10	102719243	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12371	102719243	32815504	11287	19438											
SEMA4G	57715	broad.mit.edu	37	chr10	102737423	102737423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtgcggttcctgcagcGgctcaattctacccacctct	8	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102737423	T	T	102737423	3	4	9	1	0	0	0	0	1	0	0	0	14149	1116	39	1	385	1	SEMA4G	10	102737423	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18180	102737423	32797324	11288	19439											
SEMA4G	57715	broad.mit.edu	37	chr10	102739550	102739550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggctgagcacgagttgGggggcaggcttgactccatg	16	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102739550	T	T	102739550	1	4	9	0	1	0	0	0	0	0	0	0	14149	1247	43	2		2	SEMA4G	10	102739550	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2127	102739550	32795197	11289	19440											
SEMA4G	57715	broad.mit.edu	37	chr10	102740639	102740639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccactctccagctgctccCgctaccgatcctgctatgac	6	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102740639	A	A	102740639	3	1	9	1	0	0	0	0	1	0	0	0	14149	652	23	1	1574	1	SEMA4G	10	102740639	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1089	102740639	32794108	11290	19441											
C10orf2	56652	broad.mit.edu	37	chr10	102748052	102748052	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcggaggggcctgcccCgaaacttggccccaggccct	15	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102748052	A	A	102748052	2	1	9	1	0	0	0	0	0	0	0	1	1608	644	23	1		1	C10orf2	10	102748052	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7413	102748052	32786695	11291	19442											
C10orf2	56652	broad.mit.edu	37	chr10	102748445	102748445	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccggaggatctggaacCgagcaatacctctctgggag	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102748445	A	A	102748445	2	1	9	1	0	0	0	0	0	0	0	1	1608	644	23	1		1	C10orf2	10	102748445	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	393	102748445	32786302	11292	19443											
C10orf2	56652	broad.mit.edu	37	chr10	102748795	102748795	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccttgaaccagtccacGgggctgcctacccttactct	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102748795	T	T	102748795	2	4	9	1	0	0	0	0	0	0	0	1	1608	1103	39	1		1	C10orf2	10	102748795	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	350	102748795	32785952	11293	19444											
C10orf2	56652	broad.mit.edu	37	chr10	102748820	102748820	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctacccttactctacccCgaggaacgacctgcttaccc	6	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102748820	A	A	102748820	2	1	9	1	0	0	0	0	0	0	0	1	1608	644	23	1		1	C10orf2	10	102748820	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	102748820	32785927	11294	19445											
C10orf2	56652	broad.mit.edu	37	chr10	102749652	102749652	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagcatcaggtgagactccCagattccagccaccttgctt	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102749652	G	G	102749652	1	3	9	0	1	0	0	0	0	0	0	0	1608	609	21	4		4	C10orf2	10	102749652	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	832	102749652	32785095	11295	19446											
C10orf2	56652	broad.mit.edu	37	chr10	102750336	102750336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttgtctagcttgagccCgcttggacatacaacacaca	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102750336	A	A	102750336	1	1	9	0	1	0	0	0	0	0	0	0	1608	667	23	1		1	C10orf2	10	102750336	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	684	102750336	32784411	11296	19447											
C10orf2	56652	broad.mit.edu	37	chr10	102750614	102750614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataagctctttgtgttgttGggatggcgtaggatcgcagc	15	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102750614	T	T	102750614	1	4	9	0	1	0	0	0	0	0	0	0	1608	1363	47	2		2	C10orf2	10	102750614	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	278	102750614	32784133	11297	19448											
C10orf2	56652	broad.mit.edu	37	chr10	102750651	102750651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcaagactacatcatcGgggtctttcggaagtttgca	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102750651	T	T	102750651	3	4	9	1	0	0	0	0	1	0	0	0	1608	1116	39	1	1632	1	C10orf2	10	102750651	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	102750651	32784096	11298	19449											
SFXN3	81855	broad.mit.edu	37	chr10	102794569	102794569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgaaatctgctgctgtccGgggcacagctggaagcttct	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102794569	T	T	102794569	3	4	9	1	0	0	0	0	1	0	0	0	14309	1116	39	1	136	1	SFXN3	10	102794569	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43918	102794569	32740178	11299	19450											
LBX1	10660	broad.mit.edu	37	chr10	102986967	102986967	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctcggcggtccggtccGggaggcgttgggctttcgag	17	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102986967	T	T	102986967	1	4	9	0	1	0	0	0	0	0	0	0	8725	1131	39	1		1	LBX1	10	102986967	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	192398	102986967	32547780	11300	19451											
LBX1	10660	broad.mit.edu	37	chr10	102987328	102987328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcatctcctccaggtccCgcttgagcttagcgcgccga	9	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102987328	A	A	102987328	3	1	9	1	0	0	0	0	1	0	0	0	8725	652	23	1	304	1	LBX1	10	102987328	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	361	102987328	32547419	11301	19452											
BTRC	8945	broad.mit.edu	37	chr10	103298064	103298064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttagaaaaattaaagtgtGggatcttgtggctgctttgg	12	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103298064	T	T	103298064	3	4	9	1	0	0	0	0	1	0	0	0	1579	1357	47	2	1642	2	BTRC	10	103298064	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	310736	103298064	32236683	11302	19453											
FBXW4	6468	broad.mit.edu	37	chr10	103433197	103433197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcaggcagaatgtcccCgaagtataagatggaaaagg	14	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103433197	A	A	103433197	1	1	9	0	1	0	0	0	0	0	0	0	5824	667	23	1		1	FBXW4	10	103433197	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	135133	103433197	32101550	11303	19454											
FBXW4	6468	broad.mit.edu	37	chr10	103436167	103436167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttctgagacaccttcactCgttccttcactgggacactg	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103436167	A	A	103436167	3	1	9	1	0	0	0	0	1	0	0	0	5824	884	31	3	983	3	FBXW4	10	103436167	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2970	103436167	32098580	11304	19455											
MGEA5	10724	broad.mit.edu	37	chr10	103550711	103550711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatacttctcctgcatgaagGggatccaggaaattttacat	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103550711	T	T	103550711	3	4	9	1	0	0	0	0	1	0	0	0	9648	1232	43	2	366	2	MGEA5	10	103550711	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	114544	103550711	31984036	11305	19456											
MGEA5	10724	broad.mit.edu	37	chr10	103553704	103553704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaccacctctaaaggccCagggttcttggtctccaatt	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103553704	A	A	103553704	3	1	9	1	0	0	0	0	1	0	0	0	9648	595	21	2	738	2	MGEA5	10	103553704	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2993	103553704	31981043	11306	19457											
MGEA5	10724	broad.mit.edu	37	chr10	103563644	103563644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggatcttcctttgtacGggcccagaaacagtctcttc	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103563644	T	T	103563644	3	4	9	1	0	0	0	0	1	0	0	0	9648	1116	39	1	1906	1	MGEA5	10	103563644	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9940	103563644	31971103	11307	19458											
MGEA5	10724	broad.mit.edu	37	chr10	103569998	103569998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttagaaaaagtgatatcCaatccaggtgagatcgcata	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103569998	A	A	103569998	3	1	9	1	0	0	0	0	1	0	0	0	9648	593	21	2	2379	2	MGEA5	10	103569998	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6354	103569998	31964749	11308	19459											
KCNIP2	30819	broad.mit.edu	37	chr10	103599651	103599651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggccccggggcggtcCggtctccgccctcacccggg	14	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103599651	A	A	103599651	1	1	9	0	1	0	0	0	0	0	0	0	8110	667	23	1		1	KCNIP2	10	103599651	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29653	103599651	31935096	11309	19460											
C10orf76	79591	broad.mit.edu	37	chr10	103649151	103649151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccaactaggtcatctgGggaaagtagtggcttacctg	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103649151	T	T	103649151	1	4	9	0	1	0	0	0	0	0	0	0	1627	1247	43	2		2	C10orf76	10	103649151	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49500	103649151	31885596	11310	19461											
C10orf76	79591	broad.mit.edu	37	chr10	103769081	103769081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttttcaatggaattaatcGgtatgaaatttagagagaaa	9	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103769081	T	T	103769081	1	4	9	0	1	0	0	0	0	0	0	0	1627	1131	39	1		1	C10orf76	10	103769081	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	119930	103769081	31765666	11311	19462											
C10orf76	79591	broad.mit.edu	37	chr10	103784913	103784913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaacataggtcacttacGgtcactaagcaaaggagaag	10	8	2	1	rs7091227	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103784913	T	T	103784913	2	4	9	1	0	0	0	0	0	0	0	1	1627	1130	39	1		1	C10orf76	10	103784913	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15832	103784913	31749834	11312	19463											
C10orf76	79591	broad.mit.edu	37	chr10	103792949	103792949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccaaggaaacaaataaGgggcagagtgcatttttagc	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103792949	T	T	103792949	1	4	9	0	1	0	0	0	0	0	0	0	1627	1015	35	2		2	C10orf76	10	103792949	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8036	103792949	31741798	11313	19464											
LDB1	8861	broad.mit.edu	37	chr10	103869250	103869250	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagctcttgcatgggctcGagtatcacacagagctaggg	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103869250	T	T	103869250	2	4	9	1	0	0	0	0	0	0	0	1	8767	1045	37	3		3	LDB1	10	103869250	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	76301	103869250	31665497	11314	19465											
PPRC1	23082	broad.mit.edu	37	chr10	103899382	103899382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaggtctctcctggacccCggcctgtgctcctggatgac	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103899382	A	A	103899382	2	1	9	1	0	0	0	0	0	0	0	1	12511	643	23	1		1	PPRC1	10	103899382	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30132	103899382	31635365	11315	19466											
PPRC1	23082	broad.mit.edu	37	chr10	103906388	103906388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttggaagcgtagaatcGgatctcatcctgctatctcc	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103906388	T	T	103906388	1	4	9	0	1	0	0	0	0	0	0	0	12511	1131	39	1		1	PPRC1	10	103906388	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7006	103906388	31628359	11316	19467											
PPRC1	23082	broad.mit.edu	37	chr10	103909692	103909692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctttatagactccaaccGggaagactttgacccagcac	7	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103909692	T	T	103909692	3	4	9	1	0	0	0	0	1	0	0	0	12511	1116	39	1	4955	1	PPRC1	10	103909692	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3304	103909692	31625055	11317	19468											
PPRC1	23082	broad.mit.edu	37	chr10	103909791	103909791	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctcaggaggtaaccttGggcccttccctgctatcctt	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103909791	T	T	103909791	1	4	9	0	1	0	0	0	0	0	0	0	12511	1363	47	2		2	PPRC1	10	103909791	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	99	103909791	31624956	11318	19469											
PPRC1	23082	broad.mit.edu	37	chr10	103909831	103909831	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctcctttggaggtgccCaacctcctccacccccttcc	5	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103909831	A	A	103909831	1	1	9	0	1	0	0	0	0	0	0	0	12511	609	21	2		2	PPRC1	10	103909831	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	103909831	31624916	11319	19470											
NOLC1	9221	broad.mit.edu	37	chr10	103918939	103918939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttactctttctttttcttGggtattccagctcgagcagc	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103918939	T	T	103918939	1	4	9	0	1	0	0	0	0	0	0	0	10624	1363	47	2		2	NOLC1	10	103918939	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9108	103918939	31615808	11320	19471											
NOLC1	9221	broad.mit.edu	37	chr10	103919985	103919985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataatgctacaggttctcCtcagattcaagttctgaaga	8	9	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103919985	A	A	103919985	1	1	9	0	1	0	0	0	0	0	0	0	10624	696	24	2		2	NOLC1	10	103919985	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1046	103919985	31614762	11321	19472											
ELOVL3	83401	broad.mit.edu	37	chr10	103988324	103988324	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcagcaaggtcatagaactCggtgagtggcaaagctttgt	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103988324	A	A	103988324	2	1	9	1	0	0	0	0	0	0	0	1	5117	898	31	3		3	ELOVL3	10	103988324	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68339	103988324	31546423	11322	19473											
GBF1	8729	broad.mit.edu	37	chr10	104018780	104018780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgcccgatggagcaccCatacaccactggtaagtggg	12	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104018780	A	A	104018780	3	1	9	1	0	0	0	0	1	0	0	0	6333	594	21	2	87	2	GBF1	10	104018780	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30456	104018780	31515967	11323	19474											
GBF1	8729	broad.mit.edu	37	chr10	104019817	104019817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctacaggatgaagaacGggatcctctgctgcatagtt	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104019817	T	T	104019817	3	4	9	1	0	0	0	0	1	0	0	0	6333	1116	39	1	113	1	GBF1	10	104019817	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1037	104019817	31514930	11324	19475											
GBF1	8729	broad.mit.edu	37	chr10	104117911	104117912	+	Missense_Mutation	DNP	CC	AA	AA													aggttcagagctgcccactcCcaatggaaccaccttatcat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	104117912	AA	AA	104117911	3	1	9	1	0	0	0	0	1	0	0	0	6333	623	22	2	785	2	GBF1	10	104117911	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	98094	104117911	31416836	11325	19476											
GBF1	8729	broad.mit.edu	37	chr10	104120050	104120050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggttatgattcacatGggactgcatttgctgacagt	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104120050	T	T	104120050	3	4	9	1	0	0	0	0	1	0	0	0	6333	1348	47	2	1329	2	GBF1	10	104120050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2139	104120050	31414697	11326	19477											
GBF1	8729	broad.mit.edu	37	chr10	104129870	104129870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctctccccctggctcttGgggacattctgttctcttca	8	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104129870	T	T	104129870	1	4	9	0	1	0	0	0	0	0	0	0	6333	1363	47	2		2	GBF1	10	104129870	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9820	104129870	31404877	11327	19478											
GBF1	8729	broad.mit.edu	37	chr10	104136248	104136248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacctgtgggaagaattcCtggtcctctgcaaggacatt	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104136248	A	A	104136248	1	1	9	0	1	0	0	0	0	0	0	0	6333	696	24	2		2	GBF1	10	104136248	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6378	104136248	31398499	11328	19479											
GBF1	8729	broad.mit.edu	37	chr10	104136818	104136818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagccaacatgcctctcGgggcgggcagagtgatgatg	14	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104136818	T	T	104136818	3	4	9	1	0	0	0	0	1	0	0	0	6333	1116	39	1	4538	1	GBF1	10	104136818	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	570	104136818	31397929	11329	19480											
GBF1	8729	broad.mit.edu	37	chr10	104140316	104140316	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctggtgatggacacagcGgagattttccacagtgcaga	12	9	1	3	rs137857537	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104140316	T	T	104140316	2	4	9	1	0	0	0	0	0	0	0	1	6333	1103	39	1		1	GBF1	10	104140316	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3498	104140316	31394431	11330	19481											
GBF1	8729	broad.mit.edu	37	chr10	104141777	104141777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgtcttgtaccaacaaGggaatctgactgtaaccacc	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104141777	T	T	104141777	1	4	9	0	1	0	0	0	0	0	0	0	6333	1015	35	2		2	GBF1	10	104141777	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1461	104141777	31392970	11331	19482											
NFKB2	4791	broad.mit.edu	37	chr10	104157798	104157798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagacagcaggctctgtgcGgggtggagatgaagtttatc	15	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104157798	T	T	104157798	3	4	9	1	0	0	0	0	1	0	0	0	10471	1116	39	1	752	1	NFKB2	10	104157798	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16021	104157798	31376949	11332	19483											
PSD	5662	broad.mit.edu	37	chr10	104164303	104164303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgagcctaacaccctcCatcccactggcactaggtgg	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104164303	A	A	104164303	1	1	9	0	1	0	0	0	0	0	0	0	12752	609	21	2		2	PSD	10	104164303	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6505	104164303	31370444	11333	19484											
PSD	5662	broad.mit.edu	37	chr10	104171959	104171959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaacttgaggtactcccCagccaccagtttgctgaagt	9	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104171959	A	A	104171959	3	1	9	1	0	0	0	0	1	0	0	0	12752	594	21	2	1344	2	PSD	10	104171959	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7656	104171959	31362788	11334	19485											
ACTR1A	10121	broad.mit.edu	37	chr10	104240890	104240890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaagagctactcaccCaatccacgtggaatacagtc	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104240890	A	A	104240890	3	1	9	1	0	0	0	0	1	0	0	0	209	608	21	2	111	2	ACTR1A	10	104240890	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68931	104240890	31293857	11335	19486											
ACTR1A	10121	broad.mit.edu	37	chr10	104245401	104245401	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggagatgaaaagagcGggcacattgaaggtctcgaa	14	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104245401	T	T	104245401	2	4	9	1	0	0	0	0	0	0	0	1	209	1103	39	1		1	ACTR1A	10	104245401	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4511	104245401	31289346	11336	19487											
ACTR1A	10121	broad.mit.edu	37	chr10	104245418	104245418	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcgggcacattgaaggtctCgaagaaaacttcggcagctc	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104245418	A	A	104245418	4	1	9	1	0	0	0	0	0	1	0	0	209	893	31	3	770	3	ACTR1A	10	104245418	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	104245418	31289329	11337	19488											
TRIM8	81603	broad.mit.edu	37	chr10	104414481	104414481	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggaccagctgtacaaactCgagtcagacaagcgcctggt	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104414481	A	A	104414481	2	1	9	1	0	0	0	0	0	0	0	1	16673	871	31	3		3	TRIM8	10	104414481	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	169063	104414481	31120266	11338	19489											
TRIM8	81603	broad.mit.edu	37	chr10	104415808	104415808	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtcttcccctctccccGggctctccctggactgcctt	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104415808	C	C	104415808	1	2	9	0	1	0	0	0	0	0	0	0	16673	1131	39	4		4	TRIM8	10	104415808	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1327	104415808	31118939	11339	19490											
ARL3	403	broad.mit.edu	37	chr10	104459197	104459197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctgtccaccaatgtccCatacattcagtttaaaacct	3	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104459197	A	A	104459197	3	1	9	1	0	0	0	0	1	0	0	0	939	595	21	2	367	2	ARL3	10	104459197	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43389	104459197	31075550	11340	19491											
SFXN2	118980	broad.mit.edu	37	chr10	104486387	104486387	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtccacagttttatgtgtGagcaagatggaggctgacct	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104486387	T	T	104486387	1	4	9	0	1	0	0	0	0	0	0	0	14308	1305	45	3		3	SFXN2	10	104486387	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	27190	104486387	31048360	11341	19492											
SFXN2	118980	broad.mit.edu	37	chr10	104492673	104492673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacttcatgcaggtatgtaGggtttgctttggcattttcc	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104492673	T	T	104492673	1	4	9	0	1	0	0	0	0	0	0	0	14308	1015	35	2		2	SFXN2	10	104492673	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6286	104492673	31042074	11342	19493											
CYP17A1	1586	broad.mit.edu	37	chr10	104594686	104594686	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagatgacattggttacCgccacgaagacaggaaagga	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104594686	A	A	104594686	2	1	9	1	0	0	0	0	0	0	0	1	4180	639	23	1		1	CYP17A1	10	104594686	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	102013	104594686	30940061	11343	19494											
CNNM2	54805	broad.mit.edu	37	chr10	104809491	104809491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctggctatcgtgcagcGggtaaacaatgagggagaag	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104809491	T	T	104809491	3	4	9	1	0	0	0	0	1	0	0	0	3645	1116	39	1	1697	1	CNNM2	10	104809491	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	214805	104809491	30725256	11344	19495											
CNNM2	54805	broad.mit.edu	37	chr10	104831594	104831594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttagcagcaggttctcCaggtaattctgcatgcttcc	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104831594	A	A	104831594	3	1	9	1	0	0	0	0	1	0	0	0	3645	594	21	2	2295	2	CNNM2	10	104831594	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22103	104831594	30703153	11345	19496											
NT5C2	22978	broad.mit.edu	37	chr10	104851236	104851236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcctcccaaatagctGggattactggcctggaaaga	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104851236	T	T	104851236	1	4	9	0	1	0	0	0	0	0	0	0	10782	1363	47	2		2	NT5C2	10	104851236	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19642	104851236	30683511	11346	19497											
TAF5	6877	broad.mit.edu	37	chr10	105147034	105147034	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattctaattatgttgctacGggctctgcagacagaactgt	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105147034	T	T	105147034	2	4	9	1	0	0	0	0	0	0	0	1	15647	1103	39	1		1	TAF5	10	105147034	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	295798	105147034	30387713	11347	19498											
PDCD11	22984	broad.mit.edu	37	chr10	105162949	105162949	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactggtgattagtctcccCaatggcctccagggctttgt	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105162949	A	A	105162949	2	1	9	1	0	0	0	0	0	0	0	1	11711	581	21	2		2	PDCD11	10	105162949	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15915	105162949	30371798	11348	19499											
PDCD11	22984	broad.mit.edu	37	chr10	105165756	105165756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagctacttacaggtacCgtatccagcctggaagacca	8	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105165756	A	A	105165756	2	1	9	1	0	0	0	0	0	0	0	1	11711	639	23	1		1	PDCD11	10	105165756	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2807	105165756	30368991	11349	19500											
PDCD11	22984	broad.mit.edu	37	chr10	105165838	105165838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgccactgctgaaagccCaggagtacatcagacagaag	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105165838	A	A	105165838	3	1	9	1	0	0	0	0	1	0	0	0	11711	595	21	2	679	2	PDCD11	10	105165838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	105165838	30368909	11350	19501											
PDCD11	22984	broad.mit.edu	37	chr10	105194033	105194033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccagataagaagttccGggttggccaggccctgaggg	15	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105194033	T	T	105194033	3	4	9	1	0	0	0	0	1	0	0	0	11711	1116	39	1	3683	1	PDCD11	10	105194033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28195	105194033	30340714	11351	19502											
PDCD11	22984	broad.mit.edu	37	chr10	105197831	105197831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgctgcgatcatccaggtGggtttctgtgttgttggaaa	14	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105197831	T	T	105197831	1	4	9	0	1	0	0	0	0	0	0	0	11711	1363	47	2		2	PDCD11	10	105197831	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3798	105197831	30336916	11352	19503											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105362236	105362236	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttctgcctgcccttggcGggcactgtgtccagctcttt	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105362236	T	T	105362236	2	4	9	1	0	0	0	0	0	0	0	1	14369	1103	39	1		1	SH3PXD2A	10	105362236	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	164405	105362236	30172511	11353	19504											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105362684	105362684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttggctctgcgactctgctCggtttaggaatggcttgggc	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105362684	A	A	105362684	3	1	9	1	0	0	0	0	1	0	0	0	14369	884	31	3	1114	3	SH3PXD2A	10	105362684	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	448	105362684	30172063	11354	19505											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105362723	105362723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggaccgatggcttggccCggggacaggaggtcagccca	17	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105362723	A	A	105362723	3	1	9	1	0	0	0	0	1	0	0	0	14369	652	23	1	1153	1	SH3PXD2A	10	105362723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	105362723	30172024	11355	19506											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105372880	105372880	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggccaggttcttcttccGggttggcaggtcatccttgg	14	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105372880	T	T	105372880	2	4	9	1	0	0	0	0	0	0	0	1	14369	1115	39	1		1	SH3PXD2A	10	105372880	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10157	105372880	30161867	11356	19507											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105495491	105495491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccagatacactctcaccCggcagtattcatcgatgggc	9	15	2	1	rs143409187	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105495491	A	A	105495491	3	1	9	1	0	0	0	0	1	0	0	0	14369	666	23	1	3056	1	SH3PXD2A	10	105495491	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122611	105495491	30039256	11357	19508											
SLK	9748	broad.mit.edu	37	chr10	105762142	105762142	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatattaatgaacatattacCgatgctcagttagaagcaat	7	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105762142	A	A	105762142	2	1	9	1	0	0	0	0	0	0	0	1	14862	639	23	1		1	SLK	10	105762142	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	266651	105762142	29772605	11358	19509											
SLK	9748	broad.mit.edu	37	chr10	105765373	105765373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgcaaatttattgttgatGgtgtagaagtgagtgtaaca	11	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105765373	T	T	105765373	3	4	9	1	0	0	0	0	1	0	0	0	14862	1348	47	2	2442	2	SLK	10	105765373	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3231	105765373	29769374	11359	19510											
SLK	9748	broad.mit.edu	37	chr10	105778560	105778560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcgagaagctgcaatttGggagctcgaagaacgacact	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105778560	T	T	105778560	3	4	9	1	0	0	0	0	1	0	0	0	14862	1357	47	2	3084	2	SLK	10	105778560	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13187	105778560	29756187	11360	19511											
COL17A1	1308	broad.mit.edu	37	chr10	105823571	105823571	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccatgttgtttggaactcCgaagactgcaggggcaagga	14	9	0	1	rs139445116		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105823571	A	A	105823571	4	1	9	1	0	0	0	0	0	1	0	0	3706	661	23	1	3905	1	COL17A1	10	105823571	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45011	105823571	29711176	11361	19512											
COL17A1	1308	broad.mit.edu	37	chr10	105836074	105836074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataccttcatacgcatggcGggtaacgtgagttttccttt	10	9	1	1	rs146267259	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105836074	T	T	105836074	3	4	9	1	0	0	0	0	1	0	0	0	3706	1116	39	1	4385	1	COL17A1	10	105836074	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12503	105836074	29698673	11362	19513											
C10orf79	80217	broad.mit.edu	37	chr10	105921761	105921761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacttccagaactcctccCatcatgtccatcagagctcg	6	15	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105921761	A	A	105921761	3	1	9	1	0	0	0	0	1	0	0	0	1629	594	21	2	1677	2	C10orf79	10	105921761	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85687	105921761	29612986	11363	19514											
SORCS3	22986	broad.mit.edu	37	chr10	106802871	106802871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcatgaacgcatcacacCcaacaggttttattggtaag	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106802871	A	A	106802871	3	1	9	1	0	0	0	0	1	0	0	0	15046	623	22	2	1031	2	SORCS3	10	106802871	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	881110	106802871	28731876	11364	19515											
SORCS3	22986	broad.mit.edu	37	chr10	107022043	107022043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttccagctgcccaagtttGgcacaccctgtgatcttaac	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107022043	T	T	107022043	1	4	9	0	1	0	0	0	0	0	0	0	15046	1363	47	2		2	SORCS3	10	107022043	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	219172	107022043	28512704	11365	19516											
SORCS1	114815	broad.mit.edu	37	chr10	108447983	108447983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggggtccccccttagatcCgtgtccggcgcctgcagcaa	12	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108447983	A	A	108447983	2	1	9	1	0	0	0	0	0	0	0	1	15044	639	23	1		1	SORCS1	10	108447983	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1425940	108447983	27086764	11366	19517											
XPNPEP1	7511	broad.mit.edu	37	chr10	111628453	111628453	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcaaaggtcaggcttccCcggttattaaaattatactg	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111628453	A	A	111628453	2	1	9	1	0	0	0	0	0	0	0	1	17569	610	22	2		2	XPNPEP1	10	111628453	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3180470	111628453	23906294	11367	19518											
XPNPEP1	7511	broad.mit.edu	37	chr10	111630639	111630639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatcccataaagctgaacGggcaaaggagtcaagaaggt	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111630639	T	T	111630639	3	4	9	1	0	0	0	0	1	0	0	0	17569	1116	39	1	470	1	XPNPEP1	10	111630639	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2186	111630639	23904108	11368	19519											
ADD3	120	broad.mit.edu	37	chr10	111872651	111872651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatggccaattctttctcGggtttttcttcacctcctct	5	13	6	0	rs147859836		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111872651	T	T	111872651	2	4	9	1	0	0	0	0	0	0	0	1	306	1103	39	1		1	ADD3	10	111872651	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	242012	111872651	23662096	11369	19520											
ADD3	120	broad.mit.edu	37	chr10	111879208	111879208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttcaagtgattgctgtGggcattctattttaggtgct	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111879208	T	T	111879208	1	4	9	0	1	0	0	0	0	0	0	0	306	1363	47	2		2	ADD3	10	111879208	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6557	111879208	23655539	11370	19521											
SMC3	9126	broad.mit.edu	37	chr10	112337178	112337178	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcacttctttcatttttaGgaaggtactggtcctcgtgt	8	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112337178	T	T	112337178	5	4	9	1	0	0	0	0	0	0	1	0	14898	1014	35	2	216	2	SMC3	10	112337178	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	457970	112337178	23197569	11371	19522											
PDCD4	27250	broad.mit.edu	37	chr10	112649296	112649296	+	Silent	SNP	G	T	T													ttttcctttttacagttggtGggccagtttattgctagagc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112649296	T	T	112649296	2	4	9	1	0	0	0	0	0	0	0	1	11715	1335	47	2		2	PDCD4	10	112649296	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	312118	112649296	22885451	11372	19523	132	2									
PDCD4	27250	broad.mit.edu	37	chr10	112649300	112649300	+	Missense_Mutation	SNP	C	A	A													cctttttacagttggtgggcCagtttattgctagagctgtt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112649300	A	A	112649300	3	1	9	1	0	0	0	0	1	0	0	0	11715	595	21	2	823	2	PDCD4	10	112649300	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4	112649300	22885447	11373	19524	132	2									
PDCD4	27250	broad.mit.edu	37	chr10	112649344	112649344	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggaattttatgtaatacCtatattgatagttacaaagg	8	3	0	1	rs141471132	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112649344	A	A	112649344	2	1	9	1	0	0	0	0	0	0	0	1	11715	668	24	2		2	PDCD4	10	112649344	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	112649344	22885403	11374	19525											
TECTB	6975	broad.mit.edu	37	chr10	114057836	114057836	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcctcagctgccccacGgatgaaaccgtcctcgtgca	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114057836	T	T	114057836	2	4	9	1	0	0	0	0	0	0	0	1	15870	1103	39	1		1	TECTB	10	114057836	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1408492	114057836	21476911	11375	19526											
ACSL5	51703	broad.mit.edu	37	chr10	114164414	114164414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgatattggtcagtttttGgtcttgacctcttctctctc	7	10	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114164414	T	T	114164414	1	4	9	0	1	0	0	0	0	0	0	0	180	1363	47	2		2	ACSL5	10	114164414	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	106578	114164414	21370333	11376	19527											
TCF7L2	6934	broad.mit.edu	37	chr10	114912184	114912184	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactgtaccccggctggtcCgcgcgggataactatgtagg	13	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114912184	A	A	114912184	2	1	9	1	0	0	0	0	0	0	0	1	15820	639	23	1		1	TCF7L2	10	114912184	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	747770	114912184	20622563	11377	19528											
TCF7L2	6934	broad.mit.edu	37	chr10	114920402	114920402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatactccaaagaagtgtcGggcactgttcgggcttgacc	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114920402	T	T	114920402	3	4	9	1	0	0	0	0	1	0	0	0	15820	1116	39	1	1670	1	TCF7L2	10	114920402	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8218	114920402	20614345	11378	19529											
HABP2	3026	broad.mit.edu	37	chr10	115340366	115340366	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttagaaacccagatgcGgacgaaaagccctggtgctt	10	9	0	2	rs146758495	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115340366	T	T	115340366	2	4	9	1	0	0	0	0	0	0	0	1	7004	1103	39	1		1	HABP2	10	115340366	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	419964	115340366	20194381	11379	19530											
NRAP	4892	broad.mit.edu	37	chr10	115348626	115348626	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaataaaggaagatctgGgatgggctggtgggccattc	14	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115348626	T	T	115348626	1	4	9	0	1	0	0	0	0	0	0	0	10733	1247	43	2		2	NRAP	10	115348626	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	8260	115348626	20186121	11380	19531											
NRAP	4892	broad.mit.edu	37	chr10	115350274	115350274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatggaacgtggcattatGgccatctcttaggaagaggc	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115350274	T	T	115350274	1	4	9	0	1	0	0	0	0	0	0	0	10733	1363	47	2		2	NRAP	10	115350274	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1648	115350274	20184473	11381	19532											
NRAP	4892	broad.mit.edu	37	chr10	115365518	115365518	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggtcatatcattcaactCacatcactggctatatctcc	5	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115365518	A	A	115365518	1	1	9	0	1	0	0	0	0	0	0	0	10733	841	29	3		3	NRAP	10	115365518	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15244	115365518	20169229	11382	19533											
NRAP	4892	broad.mit.edu	37	chr10	115381679	115381679	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccaccttcatgtctgtGggcaaagccgtaaagtgatg	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115381679	T	T	115381679	2	4	9	1	0	0	0	0	0	0	0	1	10733	1335	47	2		2	NRAP	10	115381679	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16161	115381679	20153068	11383	19534											
NRAP	4892	broad.mit.edu	37	chr10	115384611	115384611	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatttgcagcattggctcGggcctgcaggaagagaggct	16	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115384611	T	T	115384611	2	4	9	1	0	0	0	0	0	0	0	1	10733	1124	39	1		1	NRAP	10	115384611	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2932	115384611	20150136	11384	19535											
NRAP	4892	broad.mit.edu	37	chr10	115410239	115410239	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttggctatctgataggcGggtgtgatcatcgcagggaa	14	7	2	2	rs148959583		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115410239	T	T	115410239	2	4	9	1	0	0	0	0	0	0	0	1	10733	1103	39	1		1	NRAP	10	115410239	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25628	115410239	20124508	11385	19536											
NRAP	4892	broad.mit.edu	37	chr10	115413841	115413841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggtctggcagagctcctGggcaccaagcattcccttcc	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115413841	T	T	115413841	3	4	9	1	0	0	0	0	1	0	0	0	10733	1348	47	2	4940	2	NRAP	10	115413841	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3602	115413841	20120906	11386	19537											
CASP7	840	broad.mit.edu	37	chr10	115486108	115486108	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggcatccaggccgactcGgggcccatcaatgacacaga	12	13	1	2	rs146952079		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115486108	T	T	115486108	2	4	9	1	0	0	0	0	0	0	0	1	2702	1116	39	1		1	CASP7	10	115486108	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	72267	115486108	20048639	11387	19538											
C10orf81	79949	broad.mit.edu	37	chr10	115536932	115536932	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatgcatattttgccacGgagatcatcttctggcagtg	12	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115536932	T	T	115536932	4	4	9	1	0	0	0	0	0	1	0	0	1630	1131	39	1		1	C10orf81	10	115536932	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50824	115536932	19997815	11388	19539											
DCLRE1A	9937	broad.mit.edu	37	chr10	115601187	115601187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaattaatttgcatcattGggagaaggtgaaccaatgaa	9	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115601187	T	T	115601187	3	4	9	1	0	0	0	0	1	0	0	0	4327	1348	47	2	336	2	DCLRE1A	10	115601187	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64255	115601187	19933560	11389	19540											
DCLRE1A	9937	broad.mit.edu	37	chr10	115602117	115602117	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcacctaggaagactttctCttttccaatagagtaagtgc	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115602117	A	A	115602117	4	1	9	1	0	0	0	0	0	1	0	0	4327	922	32	3	488	3	DCLRE1A	10	115602117	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	930	115602117	19932630	11390	19541											
DCLRE1A	9937	broad.mit.edu	37	chr10	115608829	115608829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgttgcccctttgcagccCaccatgagctgattttgtga	9	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115608829	A	A	115608829	3	1	9	1	0	0	0	0	1	0	0	0	4327	594	21	2	1119	2	DCLRE1A	10	115608829	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6712	115608829	19925918	11391	19542											
NHLRC2	374354	broad.mit.edu	37	chr10	115661599	115661599	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagcagtacagtgagaacCgtttcactgaaagatggagc	13	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115661599	A	A	115661599	2	1	9	1	0	0	0	0	0	0	0	1	10501	639	23	1		1	NHLRC2	10	115661599	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52770	115661599	19873148	11392	19543											
C10orf118	55088	broad.mit.edu	37	chr10	115890993	115890993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttttaattcttctacctGggtactcaatgctttaactt	4	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115890993	T	T	115890993	3	4	9	1	0	0	0	0	1	0	0	0	1598	1357	47	2	702	2	C10orf118	10	115890993	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	229394	115890993	19643754	11393	19544											
C10orf118	55088	broad.mit.edu	37	chr10	115891030	115891030	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttctgtttgtctacaagcGagttcagcttgcagagtttg	10	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115891030	T	T	115891030	2	4	9	1	0	0	0	0	0	0	0	1	1598	1045	37	3		3	C10orf118	10	115891030	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	115891030	19643717	11394	19545											
VWA2	340706	broad.mit.edu	37	chr10	116014801	116014801	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacggtctggacatcagcccCgagagggtgagtgcaagtct	15	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116014801	A	A	116014801	2	1	9	1	0	0	0	0	0	0	0	1	17366	639	23	1		1	VWA2	10	116014801	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	123771	116014801	19519946	11395	19546											
AFAP1L2	84632	broad.mit.edu	37	chr10	116059051	116059051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggtttcctttagctccCgtttctctttccggagctga	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116059051	A	A	116059051	3	1	9	1	0	0	0	0	1	0	0	0	355	652	23	1	391	1	AFAP1L2	10	116059051	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44250	116059051	19475696	11396	19547											
AFAP1L2	84632	broad.mit.edu	37	chr10	116060059	116060059	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagattctctgctgttcCgtctggattttgacggtggt	13	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116060059	A	A	116060059	2	1	9	1	0	0	0	0	0	0	0	1	355	639	23	1		1	AFAP1L2	10	116060059	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1008	116060059	19474688	11397	19548											
AFAP1L2	84632	broad.mit.edu	37	chr10	116067733	116067733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgtgcccatgagagatGgaaaaaatagcaaacccatt	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116067733	T	T	116067733	1	4	9	0	1	0	0	0	0	0	0	0	355	1363	47	2		2	AFAP1L2	10	116067733	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7674	116067733	19467014	11398	19549											
ABLIM1	3983	broad.mit.edu	37	chr10	116201482	116201482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcggggagaaatcttaccCggtgaagcccatttcttcca	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116201482	A	A	116201482	3	1	9	1	0	0	0	0	1	0	0	0	94	666	23	1	359	1	ABLIM1	10	116201482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133749	116201482	19333265	11399	19550											
ABLIM1	3983	broad.mit.edu	37	chr10	116211364	116211364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctatttaaaagctacgcGgaggaaagcgggttttacca	11	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116211364	T	T	116211364	1	4	9	0	1	0	0	0	0	0	0	0	94	1131	39	1		1	ABLIM1	10	116211364	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9882	116211364	19323383	11400	19551											
ABLIM1	3983	broad.mit.edu	37	chr10	116247665	116247665	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccaagaattagtgaccacGagcgtatggcctacaaatgc	9	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116247665	T	T	116247665	1	4	9	0	1	0	0	0	0	0	0	0	94	1073	37	3		3	ABLIM1	10	116247665	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36301	116247665	19287082	11401	19552											
ABLIM1	3983	broad.mit.edu	37	chr10	116247756	116247756	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtagattgcttacagtcGggatgccaaacggtggagcc	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116247756	T	T	116247756	2	4	9	1	0	0	0	0	0	0	0	1	94	1103	39	1		1	ABLIM1	10	116247756	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	116247756	19286991	11402	19553											
ABLIM1	3983	broad.mit.edu	37	chr10	116335275	116335275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccatggcagcgtgtccCgtacatccgctggtagtcca	11	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116335275	A	A	116335275	3	1	9	1	0	0	0	0	1	0	0	0	94	652	23	1	2041	1	ABLIM1	10	116335275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87519	116335275	19199472	11403	19554											
ABLIM1	3983	broad.mit.edu	37	chr10	116361542	116361542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggacccaaggcaagcccCgaccatggcatgccactgag	12	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116361542	A	A	116361542	1	1	9	0	1	0	0	0	0	0	0	0	94	667	23	1		1	ABLIM1	10	116361542	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26267	116361542	19173205	11404	19555											
ABLIM1	3983	broad.mit.edu	37	chr10	116449974	116449974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctggacccaaagcgcccCgtggcctccacaatatttat	7	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116449974	A	A	116449974	1	1	9	0	1	0	0	0	0	0	0	0	94	667	23	1		1	ABLIM1	10	116449974	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88432	116449974	19084773	11405	19556											
FAM160B1	57700	broad.mit.edu	37	chr10	116595304	116595304	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatacccagtgtcctccGggaatgaaacagcaggtttt	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116595304	T	T	116595304	2	4	9	1	0	0	0	0	0	0	0	1	5516	1103	39	1		1	FAM160B1	10	116595304	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	145330	116595304	18939443	11406	19557											
FAM160B1	57700	broad.mit.edu	37	chr10	116603705	116603705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaactgggggtaagcacCgttacttgtattttcccata	8	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116603705	A	A	116603705	1	1	9	0	1	0	0	0	0	0	0	0	5516	667	23	1		1	FAM160B1	10	116603705	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8401	116603705	18931042	11407	19558											
FAM160B1	57700	broad.mit.edu	37	chr10	116620580	116620580	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccctcatccacacatccacGagtaccttttggatccttac	4	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116620580	T	T	116620580	4	4	9	1	0	0	0	0	0	1	0	0	5516	1059	37	3	2078	3	FAM160B1	10	116620580	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16875	116620580	18914167	11408	19559											
TRUB1	142940	broad.mit.edu	37	chr10	116702490	116702490	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactctagacagcgcagccCgaggagttctgggtaagaga	15	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116702490	A	A	116702490	2	1	9	1	0	0	0	0	0	0	0	1	16727	644	23	1		1	TRUB1	10	116702490	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	81910	116702490	18832257	11409	19560											
ATRNL1	26033	broad.mit.edu	37	chr10	116919825	116919825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattgttctttgaatgttcCctctactgagtcttactgga	8	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116919825	A	A	116919825	3	1	9	1	0	0	0	0	1	0	0	0	1211	623	22	2	876	2	ATRNL1	10	116919825	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	217335	116919825	18614922	11410	19561											
ATRNL1	26033	broad.mit.edu	37	chr10	116919911	116919911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacataaagcagttttacacGggaaatttatgtgggtgatt	10	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116919911	T	T	116919911	3	4	9	1	0	0	0	0	1	0	0	0	1211	1116	39	1	962	1	ATRNL1	10	116919911	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86	116919911	18614836	11411	19562											
GFRA1	2674	broad.mit.edu	37	chr10	117849334	117849334	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggcttgttcttaaccCggagggcagtggtggtagtg	17	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117849334	G	G	117849334	3	3	9	1	0	0	0	0	1	0	0	0	6411	652	23	4	294	4	GFRA1	10	117849334	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	929423	117849334	17685413	11412	19563											
C10orf96	374355	broad.mit.edu	37	chr10	118084574	118084574	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcaccgagcatcaggcGgaggagagtcgccgtttgat	13	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118084574	T	T	118084574	2	4	9	1	0	0	0	0	0	0	0	1	1638	1103	39	1		1	C10orf96	10	118084574	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	235240	118084574	17450173	11413	19564											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118350713	118350713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaacaccactcctgcccCgtaggaagggcttaaactta	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118350713	A	A	118350713	1	1	9	0	1	0	0	0	0	0	0	0	12245	667	23	1		1	PNLIPRP1	10	118350713	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	266139	118350713	17184034	11414	19565											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118351991	118351991	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaatggacagaaagaccCggttcatcatccatggcttc	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118351991	A	A	118351991	2	1	9	1	0	0	0	0	0	0	0	1	12245	643	23	1		1	PNLIPRP1	10	118351991	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1278	118351991	17182756	11415	19566											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118359629	118359629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaaagcatcctcaatccCgatgggtttgctgcatatcc	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118359629	A	A	118359629	2	1	9	1	0	0	0	0	0	0	0	1	12245	639	23	1		1	PNLIPRP1	10	118359629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7638	118359629	17175118	11416	19567											
HSPA12A	259217	broad.mit.edu	37	chr10	118460552	118460552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtccctggcggcataccCgaagctgtggaacttcctct	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118460552	A	A	118460552	3	1	9	1	0	0	0	0	1	0	0	0	7473	652	23	1	1720	1	HSPA12A	10	118460552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100923	118460552	17074195	11417	19568											
KIAA1598	57698	broad.mit.edu	37	chr10	118646023	118646023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaaactacaactggttcGgcttgtttttcaccgtcaat	6	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118646023	T	T	118646023	2	4	9	1	0	0	0	0	0	0	0	1	8316	1103	39	1		1	KIAA1598	10	118646023	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	185471	118646023	16888724	11418	19569											
KIAA1598	57698	broad.mit.edu	37	chr10	118674896	118674896	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactccatacctttgtcttcGgtctggctgtctgattaacg	8	12	3	1	rs145129567		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118674896	T	T	118674896	3	4	9	1	0	0	0	0	1	0	0	0	8316	1116	39	1	620	1	KIAA1598	10	118674896	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28873	118674896	16859851	11419	19570											
KIAA1598	57698	broad.mit.edu	37	chr10	118674916	118674916	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctggctgtctgattaacGggtctaagatgaactccctt	11	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118674916	T	T	118674916	2	4	9	1	0	0	0	0	0	0	0	1	8316	1103	39	1		1	KIAA1598	10	118674916	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	118674916	16859831	11420	19571											
KCNK18	338567	broad.mit.edu	37	chr10	118957090	118957090	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttcctctgctttctgGtgacctacgccctggtgggt	11	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118957090	C	C	118957090	3	2	9	1	0	0	0	0	1	0	0	0	8135	1261	44	4	93	4	KCNK18	10	118957090	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	282174	118957090	16577657	11421	19572											
KCNK18	338567	broad.mit.edu	37	chr10	118969013	118969013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttctttttcaggctatGgctacatctaccccgtcacc	5	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118969013	T	T	118969013	3	4	9	1	0	0	0	0	1	0	0	0	8135	1348	47	2	368	2	KCNK18	10	118969013	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11923	118969013	16565734	11422	19573											
KCNK18	338567	broad.mit.edu	37	chr10	118969093	118969093	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtatccccctgatgttcctCgttctcacggacacaggcga	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969093	A	A	118969093	2	1	9	1	0	0	0	0	0	0	0	1	8135	871	31	3		3	KCNK18	10	118969093	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	118969093	16565654	11423	19574											
SLC18A2	6571	broad.mit.edu	37	chr10	119012914	119012914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgtgttttgcagaattGgctatccaattcccatattt	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119012914	T	T	119012914	3	4	9	1	0	0	0	0	1	0	0	0	14539	1348	47	2	479	2	SLC18A2	10	119012914	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43821	119012914	16521833	11424	19575											
SLC18A2	6571	broad.mit.edu	37	chr10	119012937	119012937	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccaattcccatatttgcGggattctgcatcatgtttgt	7	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119012937	T	T	119012937	2	4	9	1	0	0	0	0	0	0	0	1	14539	1103	39	1		1	SLC18A2	10	119012937	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	119012937	16521810	11425	19576											
PDZD8	118987	broad.mit.edu	37	chr10	119043328	119043328	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcgttgtctgacgtgttGggtgtgtgttttggtgaagg	16	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119043328	T	T	119043328	2	4	9	1	0	0	0	0	0	0	0	1	11799	1335	47	2		2	PDZD8	10	119043328	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30391	119043328	16491419	11426	19577											
PDZD8	118987	broad.mit.edu	37	chr10	119044592	119044592	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaattttcggtggtagtGggtgacttcctacagctaat	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119044592	T	T	119044592	3	4	9	1	0	0	0	0	1	0	0	0	11799	1348	47	2	1816	2	PDZD8	10	119044592	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1264	119044592	16490155	11427	19578											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119798562	119798562	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ataatcaaaatagtcctggcGattttcactaaatgcattag	6	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119798562	C	C	119798562	3	2	9	1	0	0	0	0	1	0	0	0	13002	1058	37	4	364	4	RAB11FIP2	10	119798562	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	753970	119798562	15736185	11428	19579											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119798600	119798600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtgatttcaagtcacaaGggctatcagatcccccattg	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119798600	T	T	119798600	3	4	9	1	0	0	0	0	1	0	0	0	13002	1000	35	2	402	2	RAB11FIP2	10	119798600	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	119798600	15736147	11429	19580											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119799848	119799848	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaattcactattggcatcGggcatgtgagtacttggaat	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119799848	T	T	119799848	2	4	9	1	0	0	0	0	0	0	0	1	13002	1103	39	1		1	RAB11FIP2	10	119799848	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1248	119799848	15734899	11430	19581											
C10orf84	63877	broad.mit.edu	37	chr10	120070744	120070744	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagtttcttcttttttcGggcagcctgtgaattttcaa	8	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120070744	T	T	120070744	2	4	9	1	0	0	0	0	0	0	0	1	1632	1124	39	1		1	C10orf84	10	120070744	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	270896	120070744	15464003	11431	19582											
C10orf46	143384	broad.mit.edu	37	chr10	120450912	120450912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttggagccatctgaaccCactctgtgaggaaaggaaac	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120450912	A	A	120450912	3	1	9	1	0	0	0	0	1	0	0	0	1615	595	21	2	231	2	C10orf46	10	120450912	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	380168	120450912	15083835	11432	19583											
EIF3A	8661	broad.mit.edu	37	chr10	120801832	120801832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccctcgcctgggacccCggtcatcatcagcattacgc	8	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120801832	A	A	120801832	3	1	9	1	0	0	0	0	1	0	0	0	5052	652	23	1	964	1	EIF3A	10	120801832	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	350920	120801832	14732915	11433	19584											
EIF3A	8661	broad.mit.edu	37	chr10	120802220	120802220	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcatcccccagacgccGgggccgctcttcatctcttc	7	18	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120802220	T	T	120802220	2	4	9	1	0	0	0	0	0	0	0	1	5052	1115	39	1		1	EIF3A	10	120802220	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	388	120802220	14732527	11434	19585											
EIF3A	8661	broad.mit.edu	37	chr10	120803575	120803575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctacttacttctctggcGggcctcttctccactcagaa	6	15	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120803575	T	T	120803575	3	4	9	1	0	0	0	0	1	0	0	0	5052	1116	39	1	1430	1	EIF3A	10	120803575	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1355	120803575	14731172	11435	19586											
EIF3A	8661	broad.mit.edu	37	chr10	120820272	120820272	+	Missense_Mutation	SNP	G	T	T													ttttacctgctgcagaaggcGgaggatggtgttgttttgca					rs139877301		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120820272	T	T	120820272	3	4	9	1	0	0	0	0	1	0	0	0	5052	1116	39	1	2892	1	EIF3A	10	120820272	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16697	120820272	14714475	11436	19587	133	2									
EIF3A	8661	broad.mit.edu	37	chr10	120820279	120820279	+	Silent	SNP	G	T	T													tgctgcagaaggcggaggatGgtgttgttttgcagttgtgg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120820279	T	T	120820279	2	4	9	1	0	0	0	0	0	0	0	1	5052	1335	47	2		2	EIF3A	10	120820279	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	120820279	14714468	11437	19588	133	2									
FAM45A	404636	broad.mit.edu	37	chr10	120892161	120892161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttactgaaagtcctgaccCggtgtcgctgggtggtgtgc	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120892161	A	A	120892161	1	1	9	0	1	0	0	0	0	0	0	0	5615	667	23	1		1	FAM45A	10	120892161	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	71882	120892161	14642586	11438	19589											
SFXN4	119559	broad.mit.edu	37	chr10	120914657	120914657	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaatggattcaagacttcGggacatgtagacattcattc	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120914657	T	T	120914657	2	4	9	1	0	0	0	0	0	0	0	1	14310	1124	39	1		1	SFXN4	10	120914657	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22496	120914657	14620090	11439	19590											
SFXN4	119559	broad.mit.edu	37	chr10	120917365	120917365	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaaaaccccacactctctGggtctcataatactcacgta	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120917365	C	C	120917365	1	2	9	0	1	0	0	0	0	0	0	0	14310	1363	47	4		4	SFXN4	10	120917365	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2708	120917365	14617382	11440	19591											
SFXN4	119559	broad.mit.edu	37	chr10	120920467	120920467	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatcaggttgctgctgtcGggatgcactgttgccttcaa	14	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120920467	T	T	120920467	2	4	9	1	0	0	0	0	0	0	0	1	14310	1103	39	1		1	SFXN4	10	120920467	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3102	120920467	14614280	11441	19592											
SFXN4	119559	broad.mit.edu	37	chr10	120920574	120920574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaaacttacaagactcCgcttccaagcttcttgtatc	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120920574	A	A	120920574	3	1	9	1	0	0	0	0	1	0	0	0	14310	652	23	1	785	1	SFXN4	10	120920574	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107	120920574	14614173	11442	19593											
GRK5	2869	broad.mit.edu	37	chr10	121156305	121156305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggagtcttccaaacccCacagcaggtggcacaggagg	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121156305	A	A	121156305	1	1	9	0	1	0	0	0	0	0	0	0	6858	609	21	2		2	GRK5	10	121156305	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	235731	121156305	14378442	11443	19594											
TIAL1	7073	broad.mit.edu	37	chr10	121335173	121335173	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatttttttttagagtccCggctcactgtgtttggtaac	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121335173	A	A	121335173	1	1	9	0	1	0	0	0	0	0	0	0	16012	667	23	1		1	TIAL1	10	121335173	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	178868	121335173	14199574	11444	19595											
INPP5F	22876	broad.mit.edu	37	chr10	121551050	121551050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaagaagcatcattttGgtattaacaaaccagagaag	8	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121551050	T	T	121551050	3	4	9	1	0	0	0	0	1	0	0	0	7828	1348	47	2	351	2	INPP5F	10	121551050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	215877	121551050	13983697	11445	19596											
C10orf119	79892	broad.mit.edu	37	chr10	121596333	121596333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtaacttattaataagcGgtaccaagaaacagcaaaaa	6	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121596333	T	T	121596333	1	4	9	0	1	0	0	0	0	0	0	0	1599	1131	39	1		1	C10orf119	10	121596333	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45283	121596333	13938414	11446	19597											
C10orf119	79892	broad.mit.edu	37	chr10	121600410	121600410	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttctgtgaaggtactattcCgtgggcaaccactcaagtta	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121600410	G	G	121600410	3	3	9	1	0	0	0	0	1	0	0	0	1599	652	23	4	759	4	C10orf119	10	121600410	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4077	121600410	13934337	11447	19598											
C10orf119	79892	broad.mit.edu	37	chr10	121602057	121602057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggcatgagtaaggaaccCaagaagttctgctctgactg	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121602057	A	A	121602057	3	1	9	1	0	0	0	0	1	0	0	0	1599	594	21	2	899	2	C10orf119	10	121602057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1647	121602057	13932690	11448	19599											
C10orf119	79892	broad.mit.edu	37	chr10	121612602	121612602	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggtctttctgcttattGggctgtaggtccatatcgtc	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121612602	T	T	121612602	2	4	9	1	0	0	0	0	0	0	0	1	1599	1335	47	2		2	C10orf119	10	121612602	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10545	121612602	13922145	11449	19600											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122334704	122334704	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagctgcactgcttcacCgagagtgggcggggaaagag	17	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122334704	A	A	122334704	2	1	9	1	0	0	0	0	0	0	0	1	12389	639	23	1		1	PPAPDC1A	10	122334704	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	722102	122334704	13200043	11450	19601											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122348825	122348825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcctagattcctttgtGggtggagtcatcggcctcat	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122348825	T	T	122348825	2	4	9	1	0	0	0	0	0	0	0	1	12389	1335	47	2		2	PPAPDC1A	10	122348825	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14121	122348825	13185922	11451	19602											
FGFR2	2263	broad.mit.edu	37	chr10	123239508	123239508	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaactaggtgaatactgttCgagaggttggctgaggtcca	14	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123239508	A	A	123239508	4	1	9	1	0	0	0	0	0	1	0	0	5923	893	31	3	234	3	FGFR2	10	123239508	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	890683	123239508	12295239	11452	19603											
FGFR2	2263	broad.mit.edu	37	chr10	123256052	123256052	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaaagactcactttttgGgaagccaagtactccatgcc	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123256052	T	T	123256052	2	4	9	1	0	0	0	0	0	0	0	1	5923	1219	43	2		2	FGFR2	10	123256052	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16544	123256052	12278695	11453	19604											
FGFR2	2263	broad.mit.edu	37	chr10	123310934	123310934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaggcacagcatggagcCgcttttccatcttttctgtg	10	13	2	0	rs146244307		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123310934	A	A	123310934	3	1	9	1	0	0	0	0	1	0	0	0	5923	652	23	1	2283	1	FGFR2	10	123310934	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54882	123310934	12223813	11454	19605											
ATE1	11101	broad.mit.edu	37	chr10	123670629	123670629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatcaatgcaaagtcaccCgcaacagcatcatccattgt	5	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123670629	A	A	123670629	2	1	9	1	0	0	0	0	0	0	0	1	1082	639	23	1		1	ATE1	10	123670629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	359695	123670629	11864118	11455	19606											
NSMCE4A	54780	broad.mit.edu	37	chr10	123724897	123724897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctccgtatattgaaccCaacctaatgaaaagtatgct	5	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123724897	A	A	123724897	3	1	9	1	0	0	0	0	1	0	0	0	10772	593	21	2	524	2	NSMCE4A	10	123724897	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54268	123724897	11809850	11456	19607											
TACC2	10579	broad.mit.edu	37	chr10	123845347	123845347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttcggatgcagagtcccCaaagcttcttgcaagtttcc	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123845347	A	A	123845347	3	1	9	1	0	0	0	0	1	0	0	0	15621	594	21	2	3342	2	TACC2	10	123845347	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120450	123845347	11689400	11457	19608											
TACC2	10579	broad.mit.edu	37	chr10	123970285	123970285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccagatgcatatagcacGggttccagcagtgcttctag	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123970285	T	T	123970285	2	4	9	1	0	0	0	0	0	0	0	1	15621	1103	39	1		1	TACC2	10	123970285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	124938	123970285	11564462	11458	19609											
TACC2	10579	broad.mit.edu	37	chr10	124008246	124008246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctggccgacctgaactcCgtggagaagtctctggccga	13	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124008246	A	A	124008246	2	1	9	1	0	0	0	0	0	0	0	1	15621	639	23	1		1	TACC2	10	124008246	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37961	124008246	11526501	11459	19610											
TACC2	10579	broad.mit.edu	37	chr10	124008607	124008607	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcaggagtacctgtccCgggtgaagaaggaggagcag	18	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124008607	A	A	124008607	2	1	9	1	0	0	0	0	0	0	0	1	15621	643	23	1		1	TACC2	10	124008607	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	361	124008607	11526140	11460	19611											
PLEKHA1	59338	broad.mit.edu	37	chr10	124159891	124159891	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaagctaaggccaaaggcGgagttctgttttggtaagta	12	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124159891	T	T	124159891	2	4	9	1	0	0	0	0	0	0	0	1	12150	1103	39	1		1	PLEKHA1	10	124159891	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	151284	124159891	11374856	11461	19612											
HTRA1	5654	broad.mit.edu	37	chr10	124248487	124248487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggtggagaagatcgcccCtgccgtggttcatatcgaat	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124248487	A	A	124248487	3	1	9	1	0	0	0	0	1	0	0	0	7523	681	24	2	548	2	HTRA1	10	124248487	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88596	124248487	11286260	11462	19613											
HTRA1	5654	broad.mit.edu	37	chr10	124271609	124271609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcgttttctcttttccCaatattcttgttgttcctgt	7	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124271609	A	A	124271609	1	1	9	0	1	0	0	0	0	0	0	0	7523	609	21	2		2	HTRA1	10	124271609	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23122	124271609	11263138	11463	19614											
HTRA1	5654	broad.mit.edu	37	chr10	124273608	124273608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccaatcctgtttgctctGggcttttaggttctaagctg	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124273608	T	T	124273608	1	4	9	0	1	0	0	0	0	0	0	0	7523	1363	47	2		2	HTRA1	10	124273608	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1999	124273608	11261139	11464	19615											
HTRA1	5654	broad.mit.edu	37	chr10	124273755	124273755	+	Silent	SNP	C	A	A													atcagcatcaatggacagtcCgtggtctccgccaatgatgt					rs111580234	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124273755	A	A	124273755	2	1	9	1	0	0	0	0	0	0	0	1	7523	639	23	1		1	HTRA1	10	124273755	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	147	124273755	11260992	11465	19616	134	2									
HTRA1	5654	broad.mit.edu	37	chr10	124273764	124273764	+	Silent	SNP	C	A	A													aatggacagtccgtggtctcCgccaatgatgtcagcgacgt					rs139917912		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124273764	A	A	124273764	2	1	9	1	0	0	0	0	0	0	0	1	7523	639	23	1		1	HTRA1	10	124273764	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9	124273764	11260983	11466	19617	134	2									
DMBT1	1755	broad.mit.edu	37	chr10	124339299	124339299	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttggccagggctcaggaccCattgtcctggatgatgtgcg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124339299	G	G	124339299	2	3	9	1	0	0	0	0	0	0	0	1	4617	581	21	4		4	DMBT1	10	124339299	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65535	124339299	11195448	11467	19618											
DMBT1	1755	broad.mit.edu	37	chr10	124345758	124345758	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggccccaggaaatgccCggtttggtcagggctcagga	15	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124345758	A	A	124345758	2	1	9	1	0	0	0	0	0	0	0	1	4617	643	23	1		1	DMBT1	10	124345758	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6459	124345758	11188989	11468	19619											
DMBT1	1755	broad.mit.edu	37	chr10	124348642	124348642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcagccccaggaaatgccCggtttggtcagggctcagga	14	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124348642	A	A	124348642	2	1	9	1	0	0	0	0	0	0	0	1	4617	643	23	1		1	DMBT1	10	124348642	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2884	124348642	11186105	11469	19620											
DMBT1	1755	broad.mit.edu	37	chr10	124351844	124351844	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgacaggtgtcagggcCgagtagaggtcctataccga	15	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124351844	A	A	124351844	2	1	9	1	0	0	0	0	0	0	0	1	4617	644	23	1		1	DMBT1	10	124351844	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3202	124351844	11182903	11470	19621											
DMBT1	1755	broad.mit.edu	37	chr10	124351862	124351862	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagtagaggtcctatacCgaggctcctggggcaccgtg	15	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124351862	A	A	124351862	2	1	9	1	0	0	0	0	0	0	0	1	4617	644	23	1		1	DMBT1	10	124351862	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	124351862	11182885	11471	19622											
DMBT1	1755	broad.mit.edu	37	chr10	124358381	124358381	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccaaggctcctggggcacCgtgtgcgatgacagctggga	15	11	0	1	rs139554705	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124358381	A	A	124358381	2	1	9	1	0	0	0	0	0	0	0	1	4617	639	23	1		1	DMBT1	10	124358381	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6519	124358381	11176366	11472	19623											
DMBT1	1755	broad.mit.edu	37	chr10	124359656	124359656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcccttctctttctgccCaatcaccccttccacactcc	2	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124359656	A	A	124359656	1	1	9	0	1	0	0	0	0	0	0	0	4617	609	21	2		2	DMBT1	10	124359656	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1275	124359656	11175091	11473	19624											
DMBT1	1755	broad.mit.edu	37	chr10	124377590	124377590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtgacaggtgtcgaggccGagtggaggtcctataccaag	16	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124377590	T	T	124377590	3	4	9	1	0	0	0	0	1	0	0	0	4617	1058	37	3	4712	3	DMBT1	10	124377590	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17934	124377590	11157157	11474	19625											
DMBT1	1755	broad.mit.edu	37	chr10	124380629	124380630	+	Missense_Mutation	DNP	CG	AT	AT													gaggtgacaggtgtcgaggcCgagtggaggtcctgtatcga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	124380630	AT	AT	124380629	3	1	9	1	0	0	0	0	1	0	0	0	4617	644	23	1	5116	1	DMBT1	10	124380629	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	3039	124380629	11154118	11475	19626											
DMBT1	1755	broad.mit.edu	37	chr10	124380664	124380664	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcgaggctcctggggaacCgtgtgtgatgacagctggga	16	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124380664	A	A	124380664	2	1	9	1	0	0	0	0	0	0	0	1	4617	639	23	1		1	DMBT1	10	124380664	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	124380664	11154083	11476	19627											
DMBT1	1755	broad.mit.edu	37	chr10	124384212	124384212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgggccgtggcattccCaggaaatgcctggtttgatc	14	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124384212	A	A	124384212	1	1	9	0	1	0	0	0	0	0	0	0	4617	609	21	2		2	DMBT1	10	124384212	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3548	124384212	11150535	11477	19628											
DMBT1	1755	broad.mit.edu	37	chr10	124385512	124385512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttctacctgaaccataGgtcatacatttcttatcccc	3	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124385512	T	T	124385512	1	4	9	0	1	0	0	0	0	0	0	0	4617	1015	35	2		2	DMBT1	10	124385512	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1300	124385512	11149235	11478	19629											
DMBT1	1755	broad.mit.edu	37	chr10	124389434	124389434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctaccctgcatactaccCcaacaatgctaagtgtgttt	5	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124389434	A	A	124389434	3	1	9	1	0	0	0	0	1	0	0	0	4617	623	22	2	5534	2	DMBT1	10	124389434	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3922	124389434	11145313	11479	19630											
DMBT1	1755	broad.mit.edu	37	chr10	124390527	124390527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctatggtctatgtgccGggcgtgtagaaatttaccat	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124390527	T	T	124390527	3	4	9	1	0	0	0	0	1	0	0	0	4617	1116	39	1	5871	1	DMBT1	10	124390527	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1093	124390527	11144220	11480	19631											
DMBT1	1755	broad.mit.edu	37	chr10	124402789	124402789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtatgacccctcttccCgctgctaccgaggctgtgtg	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124402789	A	A	124402789	3	1	9	1	0	0	0	0	1	0	0	0	4617	652	23	1	7327	1	DMBT1	10	124402789	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12262	124402789	11131958	11481	19632											
C10orf120	399814	broad.mit.edu	37	chr10	124457346	124457346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcactgaagtggtctctcCgtgatataaaatcctgattc	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124457346	A	A	124457346	3	1	9	1	0	0	0	0	1	0	0	0	1601	652	23	1	100	1	C10orf120	10	124457346	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54557	124457346	11077401	11482	19633											
C10orf120	399814	broad.mit.edu	37	chr10	124457888	124457888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtttctttttatactcCattgcttgtttgtagtccgg	8	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124457888	A	A	124457888	3	1	9	1	0	0	0	0	1	0	0	0	1601	594	21	2	642	2	C10orf120	10	124457888	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	542	124457888	11076859	11483	19634											
C10orf120	399814	broad.mit.edu	37	chr10	124457907	124457907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgcttgtttgtagtccGgagacagcaactgtagttcc	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124457907	T	T	124457907	3	4	9	1	0	0	0	0	1	0	0	0	1601	1116	39	1	661	1	C10orf120	10	124457907	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	124457907	11076840	11484	19635											
C10orf120	399814	broad.mit.edu	37	chr10	124457984	124457984	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagccttcttgctgctatGgtgtgaatgccacctagacg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124457984	T	T	124457984	2	4	9	1	0	0	0	0	0	0	0	1	1601	1335	47	2		2	C10orf120	10	124457984	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	77	124457984	11076763	11485	19636											
C10orf120	399814	broad.mit.edu	37	chr10	124458089	124458089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctagtggctggttctccCtccattgtggaaagtgtttg	12	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124458089	A	A	124458089	1	1	9	0	1	0	0	0	0	0	0	0	1601	696	24	2		2	C10orf120	10	124458089	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	124458089	11076658	11486	19637											
CUZD1	50624	broad.mit.edu	37	chr10	124591778	124591778	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaacatgtctcacttaGggttggacctgttagttaat	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124591778	T	T	124591778	1	4	9	0	1	0	0	0	0	0	0	0	4099	1015	35	2		2	CUZD1	10	124591778	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	133689	124591778	10942969	11487	19638											
PSTK	118672	broad.mit.edu	37	chr10	124742364	124742364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaggactgaagccatgtGggaagattttataacctgct	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124742364	T	T	124742364	3	4	9	1	0	0	0	0	1	0	0	0	12826	1357	47	2	338	2	PSTK	10	124742364	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150586	124742364	10792383	11488	19639											
CPXM2	119587	broad.mit.edu	37	chr10	125506500	125506500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgaccacatactctccaGggttcaggaggcgccagtaa	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125506500	T	T	125506500	3	4	9	1	0	0	0	0	1	0	0	0	3870	1000	35	2	223	2	CPXM2	10	125506500	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	764136	125506500	10028247	11489	19640											
CPXM2	119587	broad.mit.edu	37	chr10	125539747	125539747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtggtcatctcgttcCggcggtgataataattatta	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125539747	A	A	125539747	3	1	9	1	0	0	0	0	1	0	0	0	3870	652	23	1	1388	1	CPXM2	10	125539747	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33247	125539747	9995000	11490	19641											
CPXM2	119587	broad.mit.edu	37	chr10	125639711	125639711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactggtgtaggggctctcCgagagcctcacttactctct	12	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125639711	A	A	125639711	1	1	9	0	1	0	0	0	0	0	0	0	3870	667	23	1		1	CPXM2	10	125639711	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	99964	125639711	9895036	11491	19642											
CPXM2	119587	broad.mit.edu	37	chr10	125639745	125639745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctctctgacatcttcacGggccacacggacactgtgat	8	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125639745	T	T	125639745	3	4	9	1	0	0	0	0	1	0	0	0	3870	1116	39	1	1937	1	CPXM2	10	125639745	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	125639745	9895002	11492	19643											
CHST15	51363	broad.mit.edu	37	chr10	125769741	125769741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagggcctgtagaaatccCgcagaatcttctgtgtgatg	12	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125769741	A	A	125769741	3	1	9	1	0	0	0	0	1	0	0	0	3434	652	23	1	79	1	CHST15	10	125769741	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129996	125769741	9765006	11493	19644											
CHST15	51363	broad.mit.edu	37	chr10	125805288	125805288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttaatgcttggatagtcCttcatgtatgaaatattatt	6	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125805288	A	A	125805288	3	1	9	1	0	0	0	0	1	0	0	0	3434	680	24	2	1272	2	CHST15	10	125805288	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35547	125805288	9729459	11494	19645											
FAM53B	9679	broad.mit.edu	37	chr10	126395248	126395248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaatggagtcagctcccCgggtgctgaggctttcactt	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126395248	A	A	126395248	3	1	9	1	0	0	0	0	1	0	0	0	5631	652	23	1	1249	1	FAM53B	10	126395248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	589960	126395248	9139499	11495	19646											
FAM175B	23172	broad.mit.edu	37	chr10	126517402	126517402	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacaaagtgtcttcagtgcCaaatacttctcagagttatg	8	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126517402	T	T	126517402	3	4	9	1	0	0	0	0	1	0	0	0	5543	594	21	4	558	4	FAM175B	10	126517402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122154	126517402	9017345	11496	19647											
FAM175B	23172	broad.mit.edu	37	chr10	126523501	126523501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgacccatggcacatccCgacgaggaccccaggaacac	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126523501	A	A	126523501	2	1	9	1	0	0	0	0	0	0	0	1	5543	639	23	1		1	FAM175B	10	126523501	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6099	126523501	9011246	11497	19648											
CTBP2	1488	broad.mit.edu	37	chr10	126715946	126715946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggctgactcctgggtccCgatagaggggaggctctttg	16	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126715946	A	A	126715946	1	1	9	0	1	0	0	0	0	0	0	0	4032	652	23	1		1	CTBP2	10	126715946	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	192445	126715946	8818801	11498	19649											
C10orf137	26098	broad.mit.edu	37	chr10	127412440	127412440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgagcatggcagtacacCgcataggaaggactctctta	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127412440	A	A	127412440	3	1	9	1	0	0	0	0	1	0	0	0	1605	652	23	1	459	1	C10orf137	10	127412440	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	696494	127412440	8122307	11499	19650											
C10orf137	26098	broad.mit.edu	37	chr10	127434403	127434403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttttattatgtaacacGggaaggctcatgcggatttg	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127434403	T	T	127434403	2	4	9	1	0	0	0	0	0	0	0	1	1605	1103	39	1		1	C10orf137	10	127434403	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21963	127434403	8100344	11500	19651											
C10orf137	26098	broad.mit.edu	37	chr10	127451820	127451820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggacctctgaattgtcGgtaggcattgctggtccctt	11	10	2	1	rs113668623		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127451820	T	T	127451820	1	4	9	0	1	0	0	0	0	0	0	0	1605	1131	39	1		1	C10orf137	10	127451820	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17417	127451820	8082927	11501	19652											
DHX32	55760	broad.mit.edu	37	chr10	127527656	127527656	+	Nonsense_Mutation	SNP	C	A	A													aggttctgcatagggaagctCgattcgcttgataatttcta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127527656	A	A	127527656	4	1	9	1	0	0	0	0	0	1	0	0	4545	893	31	3	448	3	DHX32	10	127527656	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75836	127527656	8007091	11502	19653	135	2									
DHX32	55760	broad.mit.edu	37	chr10	127527661	127527661	+	Missense_Mutation	SNP	C	A	A													ctgcatagggaagctcgattCgcttgataatttctaagagt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127527661	A	A	127527661	3	1	9	1	0	0	0	0	1	0	0	0	4545	884	31	3	453	3	DHX32	10	127527661	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5	127527661	8007086	11503	19654	135	2									
FANK1	92565	broad.mit.edu	37	chr10	127697134	127697134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatggtaggtcctcctccCgaaaataggcagttttctac	8	11	1	0	rs146548354	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127697134	A	A	127697134	1	1	9	0	1	0	0	0	0	0	0	0	5729	667	23	1		1	FANK1	10	127697134	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	169473	127697134	7837613	11504	19655											
ADAM12	8038	broad.mit.edu	37	chr10	127737901	127737901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtacacgtgggtccccCggcacagaatccggcctcct	10	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127737901	A	A	127737901	3	1	9	1	0	0	0	0	1	0	0	0	236	652	23	1	1022	1	ADAM12	10	127737901	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40767	127737901	7796846	11505	19656											
ADAM12	8038	broad.mit.edu	37	chr10	127786954	127786954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggggaatcattatcaaGgggaaccagctcccaatgcc	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127786954	T	T	127786954	1	4	9	0	1	0	0	0	0	0	0	0	236	1015	35	2		2	ADAM12	10	127786954	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49053	127786954	7747793	11506	19657											
ADAM12	8038	broad.mit.edu	37	chr10	127787053	127787053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatgccgatggtggtccCttggaaataaaccccactag	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127787053	A	A	127787053	3	1	9	1	0	0	0	0	1	0	0	0	236	681	24	2	1956	2	ADAM12	10	127787053	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99	127787053	7747694	11507	19658											
C10orf90	118611	broad.mit.edu	37	chr10	128147737	128147737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttcaagcttcttcagcCgttcttgtgagcgagaaatg	11	8	4	2	rs146050899	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128147737	A	A	128147737	3	1	9	1	0	0	0	0	1	0	0	0	1634	652	23	1	346	1	C10orf90	10	128147737	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	360684	128147737	7387010	11508	19659											
C10orf90	118611	broad.mit.edu	37	chr10	128153269	128153269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccctcgctccttacctttGgggaacttgctttctatctg	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128153269	T	T	128153269	2	4	9	1	0	0	0	0	0	0	0	1	1634	1335	47	2		2	C10orf90	10	128153269	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5532	128153269	7381478	11509	19660											
C10orf90	118611	broad.mit.edu	37	chr10	128193275	128193275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctcagccctgcacttgGggcacagagagtccccagca	11	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128193275	T	T	128193275	3	4	9	1	0	0	0	0	1	0	0	0	1634	1232	43	2	1633	2	C10orf90	10	128193275	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40006	128193275	7341472	11510	19661											
C10orf90	118611	broad.mit.edu	37	chr10	128202502	128202502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctactgtggtagctgtccCgtaatcctaggcaaaagaag	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128202502	A	A	128202502	3	1	9	1	0	0	0	0	1	0	0	0	1634	652	23	1	2102	1	C10orf90	10	128202502	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9227	128202502	7332245	11511	19662											
DOCK1	1793	broad.mit.edu	37	chr10	128821552	128821552	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaagaacgtggaggtcacGgtgtctgtgtacgatgagga	17	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128821552	T	T	128821552	2	4	9	1	0	0	0	0	0	0	0	1	4724	1103	39	1		1	DOCK1	10	128821552	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	619050	128821552	6713195	11512	19663											
DOCK1	1793	broad.mit.edu	37	chr10	128821645	128821645	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttttacttgccaagtgctCaccttggctctgctacagca	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128821645	A	A	128821645	1	1	9	0	1	0	0	0	0	0	0	0	4724	841	29	3		3	DOCK1	10	128821645	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	128821645	6713102	11513	19664											
DOCK1	1793	broad.mit.edu	37	chr10	128850979	128850979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgaagaactacgtggacGgtgctgagaagccgggagta	16	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128850979	T	T	128850979	3	4	9	1	0	0	0	0	1	0	0	0	4724	1116	39	1	2259	1	DOCK1	10	128850979	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29334	128850979	6683768	11514	19665											
FAM196A	642938	broad.mit.edu	37	chr10	128936127	128936127	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccagagtttccatcttcCgtgctttttagattcagttt	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128936127	A	A	128936127	4	1	9	1	0	0	0	0	0	1	0	0	5575	661	23	1	29	1	FAM196A	10	128936127	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85148	128936127	6598620	11515	19666											
FAM196A	642938	broad.mit.edu	37	chr10	128936161	128936161	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttttggatttttgcttGggagttgaggagtaagtctc	13	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128936161	T	T	128936161	2	4	9	1	0	0	0	0	0	0	0	1	5575	1335	47	2		2	FAM196A	10	128936161	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	128936161	6598586	11516	19667											
FAM196A	642938	broad.mit.edu	37	chr10	128974429	128974429	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggctgctctgcaggacacGggcttggcctcccgcttctc	12	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128974429	T	T	128974429	2	4	9	1	0	0	0	0	0	0	0	1	5575	1103	39	1		1	FAM196A	10	128974429	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38268	128974429	6560318	11517	19668											
DOCK1	1793	broad.mit.edu	37	chr10	129200919	129200919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagccaagtcaggcgccCagtttctacataaatggcac	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129200919	A	A	129200919	1	1	9	0	1	0	0	0	0	0	0	0	4724	609	21	2		2	DOCK1	10	129200919	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	226490	129200919	6333828	11518	19669											
DOCK1	1793	broad.mit.edu	37	chr10	129200963	129200963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcctctcttcaccctacGgttccttttccctggctcca	5	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129200963	T	T	129200963	1	4	9	0	1	0	0	0	0	0	0	0	4724	1131	39	1		1	DOCK1	10	129200963	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	129200963	6333784	11519	19670											
DOCK1	1793	broad.mit.edu	37	chr10	129209067	129209067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaaattggctatttgccGggttaaatatctaatgatct	8	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129209067	T	T	129209067	1	4	9	0	1	0	0	0	0	0	0	0	4724	1131	39	1		1	DOCK1	10	129209067	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8104	129209067	6325680	11520	19671											
NPS	594857	broad.mit.edu	37	chr10	129347775	129347775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaaaactcaatctcatcCtagttctgtcgctgtccaca	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129347775	A	A	129347775	3	1	9	1	0	0	0	0	1	0	0	0	10694	680	24	2	37	2	NPS	10	129347775	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138708	129347775	6186972	11521	19672											
MKI67	4288	broad.mit.edu	37	chr10	129899841	129899841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctgaatgtccatctctGgggaggtcttcatgggcttc	12	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129899841	T	T	129899841	3	4	9	1	0	0	0	0	1	0	0	0	9691	1348	47	2	392	2	MKI67	10	129899841	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	552066	129899841	5634906	11522	19673											
MKI67	4288	broad.mit.edu	37	chr10	129900859	129900859	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaccttattttcagggaccGagtcttgtaatttgtgttcc	8	9	3	0	rs145121731	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129900859	T	T	129900859	4	4	9	1	0	0	0	0	0	1	0	0	9691	1059	37	3	537	3	MKI67	10	129900859	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1018	129900859	5633888	11523	19674											
MKI67	4288	broad.mit.edu	37	chr10	129901432	129901432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttctgcgtccagcttcCgctttgcaggttgcttaaat	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129901432	A	A	129901432	3	1	9	1	0	0	0	0	1	0	0	0	9691	652	23	1	1110	1	MKI67	10	129901432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	573	129901432	5633315	11524	19675											
MKI67	4288	broad.mit.edu	37	chr10	129902670	129902670	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatcttgagcctttgcttGgagcttcttgaggttttgaa	12	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129902670	T	T	129902670	2	4	9	1	0	0	0	0	0	0	0	1	9691	1335	47	2		2	MKI67	10	129902670	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1238	129902670	5632077	11525	19676											
MKI67	4288	broad.mit.edu	37	chr10	129903695	129903695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtgtgagctgcttcaGggctgagagctcttccacta	13	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129903695	T	T	129903695	3	4	9	1	0	0	0	0	1	0	0	0	9691	991	35	2	3373	2	MKI67	10	129903695	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1025	129903695	5631052	11526	19677											
MKI67	4288	broad.mit.edu	37	chr10	129903932	129903932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttggccacctctccatccCagttccatagtttgctgggt	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129903932	A	A	129903932	3	1	9	1	0	0	0	0	1	0	0	0	9691	594	21	2	3610	2	MKI67	10	129903932	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	237	129903932	5630815	11527	19678											
MKI67	4288	broad.mit.edu	37	chr10	129904188	129904188	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctgtgattttgtcatcGgtcattgattcctcagtgtg	9	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129904188	T	T	129904188	2	4	9	1	0	0	0	0	0	0	0	1	9691	1103	39	1		1	MKI67	10	129904188	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	256	129904188	5630559	11528	19679											
MKI67	4288	broad.mit.edu	37	chr10	129904503	129904503	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgtttgttggggtgtcCgctgggtctgattgcggaga	17	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129904503	A	A	129904503	2	1	9	1	0	0	0	0	0	0	0	1	9691	639	23	1		1	MKI67	10	129904503	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	315	129904503	5630244	11529	19680											
MKI67	4288	broad.mit.edu	37	chr10	129904749	129904749	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcacctactgctggtttGggtgtgtgcatggctttgcc	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129904749	T	T	129904749	2	4	9	1	0	0	0	0	0	0	0	1	9691	1335	47	2		2	MKI67	10	129904749	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	246	129904749	5629998	11530	19681											
MKI67	4288	broad.mit.edu	37	chr10	129905192	129905192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttcacgcccactttccCcagggatgtcttgagccgtc	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129905192	A	A	129905192	3	1	9	1	0	0	0	0	1	0	0	0	9691	623	22	2	4870	2	MKI67	10	129905192	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	443	129905192	5629555	11531	19682											
MKI67	4288	broad.mit.edu	37	chr10	129905515	129905515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttgcctgctgatggtgttCgtttcctgagtgcgaagaat	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129905515	A	A	129905515	3	1	9	1	0	0	0	0	1	0	0	0	9691	884	31	3	5193	3	MKI67	10	129905515	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	323	129905515	5629232	11532	19683											
MKI67	4288	broad.mit.edu	37	chr10	129905550	129905550	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaattcttcttctacgtcCactttcctgagacttctctt	4	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129905550	A	A	129905550	2	1	9	1	0	0	0	0	0	0	0	1	9691	581	21	2		2	MKI67	10	129905550	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	129905550	5629197	11533	19684											
MKI67	4288	broad.mit.edu	37	chr10	129905571	129905571	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcctgagacttctcttGgactgtggcttggagcttgt	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129905571	T	T	129905571	2	4	9	1	0	0	0	0	0	0	0	1	9691	1335	47	2		2	MKI67	10	129905571	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	129905571	5629176	11534	19685											
MKI67	4288	broad.mit.edu	37	chr10	129906815	129906815	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccaggtcttctagtgactGggcctcttccttaggcgttc	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129906815	C	C	129906815	3	2	9	1	0	0	0	0	1	0	0	0	9691	1357	47	4	6493	4	MKI67	10	129906815	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1244	129906815	5627932	11535	19686											
MKI67	4288	broad.mit.edu	37	chr10	129906863	129906863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcattccagttacacGggctgctgggtccaggatct	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129906863	T	T	129906863	3	4	9	1	0	0	0	0	1	0	0	0	9691	1116	39	1	6541	1	MKI67	10	129906863	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48	129906863	5627884	11536	19687											
MKI67	4288	broad.mit.edu	37	chr10	129913348	129913348	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacagagttaaaaatggctCattgtgaatttcagtttccg	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129913348	A	A	129913348	4	1	9	1	0	0	0	0	0	1	0	0	9691	835	29	3	8482	3	MKI67	10	129913348	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6485	129913348	5621399	11537	19688											
MKI67	4288	broad.mit.edu	37	chr10	129914032	129914032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttcaattctccataacGgctcactaatttaacgctgg	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129914032	T	T	129914032	3	4	9	1	0	0	0	0	1	0	0	0	9691	1116	39	1	9166	1	MKI67	10	129914032	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	684	129914032	5620715	11538	19689											
EBF3	253738	broad.mit.edu	37	chr10	131646680	131646680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaacctttcgggatcaccCggatgtcttgggatcacttt	11	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131646680	A	A	131646680	2	1	9	1	0	0	0	0	0	0	0	1	4922	639	23	1		1	EBF3	10	131646680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1732648	131646680	3888067	11539	19690											
EBF3	253738	broad.mit.edu	37	chr10	131761770	131761770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcttctcgaagtgcgccCgcgccagccccacgccgctg	12	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131761770	A	A	131761770	3	1	9	1	0	0	0	0	1	0	0	0	4922	652	23	1	1563	1	EBF3	10	131761770	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115090	131761770	3772977	11540	19691											
GLRX3	10539	broad.mit.edu	37	chr10	131977677	131977677	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatcttaaacttggtgccCaactattgtaagaaatattt	5	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131977677	A	A	131977677	1	1	9	0	1	0	0	0	0	0	0	0	6525	609	21	2		2	GLRX3	10	131977677	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	215907	131977677	3557070	11541	19692											
PPP2R2D	55844	broad.mit.edu	37	chr10	133748077	133748077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcagtaattttcagtcCacaaatcaaatgcaattatt	6	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133748077	A	A	133748077	1	1	9	0	1	0	0	0	0	0	0	0	12488	609	21	2		2	PPP2R2D	10	133748077	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1770400	133748077	1786670	11542	19693											
LRRC27	80313	broad.mit.edu	37	chr10	134165144	134165144	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccaggagcatcttaccCgacctcttgtcaccgtacca	6	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165144	A	A	134165144	2	1	9	1	0	0	0	0	0	0	0	1	9068	652	23	1		1	LRRC27	10	134165144	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	417067	134165144	1369603	11543	19694											
LRRC27	80313	broad.mit.edu	37	chr10	134165158	134165158	+	Missense_Mutation	SNP	C	A	A													cttacccgacctcttgtcacCgtaccaaatggcgatccgag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165158	A	A	134165158	3	1	9	1	0	0	0	0	1	0	0	0	9068	652	23	1	1095	1	LRRC27	10	134165158	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	134165158	1369589	11544	19695	136	2									
LRRC27	80313	broad.mit.edu	37	chr10	134165163	134165163	+	Missense_Mutation	SNP	C	A	A													ccgacctcttgtcaccgtacCaaatggcgatccgagcaaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165163	A	A	134165163	3	1	9	1	0	0	0	0	1	0	0	0	9068	595	21	2	1100	2	LRRC27	10	134165163	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5	134165163	1369584	11545	19696	136	2									
INPP5A	3632	broad.mit.edu	37	chr10	134463995	134463995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgaaaactacaaatccCaggagcacttcacggtgagt	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134463995	A	A	134463995	3	1	9	1	0	0	0	0	1	0	0	0	7824	595	21	2	306	2	INPP5A	10	134463995	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	298832	134463995	1070752	11546	19697											
INPP5A	3632	broad.mit.edu	37	chr10	134464018	134464018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcacttcacggtgagtccCtcccgctgcctggtgcaggg	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134464018	A	A	134464018	1	1	9	0	1	0	0	0	0	0	0	0	7824	696	24	2		2	INPP5A	10	134464018	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	134464018	1070729	11547	19698											
INPP5A	3632	broad.mit.edu	37	chr10	134540260	134540260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagcgtggaggagcaccGgggccgggcatgagggctgg	24	8	0	1	rs115042652	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134540260	T	T	134540260	1	4	9	0	1	0	0	0	0	0	0	0	7824	1131	39	1		1	INPP5A	10	134540260	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	76242	134540260	994487	11548	19699											
KNDC1	85442	broad.mit.edu	37	chr10	135024161	135024161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaattcctctacaccttcCgctacttctgcacaccccac	3	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135024161	A	A	135024161	3	1	9	1	0	0	0	0	1	0	0	0	8497	652	23	1	3923	1	KNDC1	10	135024161	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	483901	135024161	510586	11549	19700											
ZNF511	118472	broad.mit.edu	37	chr10	135125215	135125215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttactcactgctctctcccCgcagcccagcctcagcagaa	7	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135125215	A	A	135125215	1	1	9	0	1	0	0	0	0	0	0	0	18082	667	23	1		1	ZNF511	10	135125215	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	101054	135125215	409532	11550	19701											
ZNF511	118472	broad.mit.edu	37	chr10	135125373	135125373	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagctctttctgaaaccCgttctcaacatgtgttcggt	8	11	4	2	rs41317290	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135125373	A	A	135125373	2	1	9	1	0	0	0	0	0	0	0	1	18082	667	23	1		1	ZNF511	10	135125373	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	158	135125373	409374	11551	19702											
ZNF511	118472	broad.mit.edu	37	chr10	135126329	135126329	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctttggtcagggtgccgctCgaggatttaaaagcaacaag	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135126329	A	A	135126329	1	1	9	0	1	0	0	0	0	0	0	0	18082	876	31	3		3	ZNF511	10	135126329	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	956	135126329	408418	11552	19703											
PAOX	196743	broad.mit.edu	37	chr10	135202479	135202479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtccacgttctctgtGggttcattgccggacttgag	13	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135202479	T	T	135202479	3	4	9	1	0	0	0	0	1	0	0	0	11517	1348	47	2	1159	2	PAOX	10	135202479	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	76150	135202479	332268	11553	19704											
PAOX	196743	broad.mit.edu	37	chr10	135202490	135202490	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctctgtgggttcattgcCggacttgagtctgagttcat	12	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135202490	A	A	135202490	2	1	9	1	0	0	0	0	0	0	0	1	11517	652	23	1		1	PAOX	10	135202490	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	135202490	332257	11554	19705											
PAOX	196743	broad.mit.edu	37	chr10	135204833	135204833	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctccagatcctgtttgcGggggaagccacacatcgcac	11	14	0	1	rs138148003		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135204833	T	T	135204833	2	4	9	1	0	0	0	0	0	0	0	1	11517	1116	39	1		1	PAOX	10	135204833	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2343	135204833	329914	11555	19706											
MTG1	92170	broad.mit.edu	37	chr10	135209689	135209689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactttcaggccgcaaccCtctgtttcaggaaacccttg	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135209689	A	A	135209689	3	1	9	1	0	0	0	0	1	0	0	0	10020	681	24	2	210	2	MTG1	10	135209689	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4856	135209689	325058	11556	19707											
CYP2E1	1571	broad.mit.edu	37	chr10	135352290	135352290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attgttacttctaggaaaacGagtgtgtgctggagaaggcc	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135352290	T	T	135352290	3	4	9	1	0	0	0	0	1	0	0	0	4203	1058	37	3	1338	3	CYP2E1	10	135352290	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	142601	135352290	182457	11557	19708											
SYCE1	93426	broad.mit.edu	37	chr10	135368865	135368865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcttaccacatctcctGggccagcctcttcctcttgt	9	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135368865	T	T	135368865	3	4	9	1	0	0	0	0	1	0	0	0	15546	1348	47	2	198	2	SYCE1	10	135368865	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16575	135368865	165882	11558	19709											
FRG2B	441581	broad.mit.edu	37	chr10	135438991	135438991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcgcccagtgcaagccCtggaacgtcccctatggtgg	13	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135438991	A	A	135438991	3	1	9	1	0	0	0	0	1	0	0	0	6107	681	24	2	390	2	FRG2B	10	135438991	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70126	135438991	95756	11559	19710											
FRG2B	441581	broad.mit.edu	37	chr10	135440244	135440244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcttcatttccctttccCatgttgaagctcaagtgaaa	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135440244	A	A	135440244	3	1	9	1	0	0	0	0	1	0	0	0	6107	594	21	2	848	2	FRG2B	10	135440244	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1253	135440244	94503	11560	19711											
ODF3	113746	broad.mit.edu	37	chr11	198643	198643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccatctgaaccctccccCggaacccaggacccaccagt	6	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198643	A	A	198643	1	1	9	0	1	0	0	0	0	0	0	0	10924	667	23	1		1	ODF3	11	198643	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08		198643	134807873	11561	19712											
RIC8A	60626	broad.mit.edu	37	chr11	209514	209514	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccgggaccgcaactgcctGgacccgttcaccagccgcca	10	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209514	C	C	209514	2	2	9	1	0	0	0	0	0	0	0	1	13464	1335	47	4		4	RIC8A	11	209514	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10871	209514	134797002	11562	19713											
PSMD13	5719	broad.mit.edu	37	chr11	251916	251916	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgacctgggtgcagcccCgagtgttggatttgcaacag	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	251916	A	A	251916	2	1	9	1	0	0	0	0	0	0	0	1	12802	644	23	1		1	PSMD13	11	251916	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42402	251916	134754600	11563	19714											
PSMD13	5719	broad.mit.edu	37	chr11	252523	252523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcaagggaatgaaggacCgcctggagttctggtgcacg	15	8	2	2	rs148960827		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	252523	A	A	252523	3	1	9	1	0	0	0	0	1	0	0	0	12802	652	23	1	1185	1	PSMD13	11	252523	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	607	252523	134753993	11564	19715											
ATHL1	80162	broad.mit.edu	37	chr11	293176	293176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaggagtcatgtccccCgacgagtaccattcaggggt	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	293176	A	A	293176	2	1	9	1	0	0	0	0	0	0	0	1	1108	639	23	1		1	ATHL1	11	293176	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40653	293176	134713340	11565	19716											
PKP3	11187	broad.mit.edu	37	chr11	404129	404129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttcatcaagaagaagcGggacaggtaggggccgaccc	13	11	3	2	rs79659860	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	404129	T	T	404129	3	4	9	1	0	0	0	0	1	0	0	0	12081	1116	39	1	2306	1	PKP3	11	404129	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110953	404129	134602387	11566	19717											
ANO9	338440	broad.mit.edu	37	chr11	418545	418545	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccgactgagggatgtcGggcacgaaccaggcggcgat	15	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	418545	T	T	418545	2	4	9	1	0	0	0	0	0	0	0	1	704	1103	39	1		1	ANO9	11	418545	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14416	418545	134587971	11567	19718											
PTDSS2	81490	broad.mit.edu	37	chr11	473953	473953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcacacaagctaaagacGggccattttccagacctcat	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	473953	T	T	473953	3	4	9	1	0	0	0	0	1	0	0	0	12843	1116	39	1	353	1	PTDSS2	11	473953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55408	473953	134532563	11568	19719											
PTDSS2	81490	broad.mit.edu	37	chr11	479051	479051	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgtggaggcctggaccGggcgcactaacgttctgtcg	17	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	479051	T	T	479051	1	4	9	0	1	0	0	0	0	0	0	0	12843	1131	39	1		1	PTDSS2	11	479051	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5098	479051	134527465	11569	19720											
RNH1	6050	broad.mit.edu	37	chr11	497922	497922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcccttgtgtgcacacacGggcatatgatctcccaaatg	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	497922	T	T	497922	1	4	9	0	1	0	0	0	0	0	0	0	13615	1131	39	1		1	RNH1	11	497922	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18871	497922	134508594	11570	19721											
LRRC56	115399	broad.mit.edu	37	chr11	541550	541550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacagcaggccctggcccGggtggatgaccttcggctgg	15	13	1	1	rs143908864	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	541550	T	T	541550	3	4	9	1	0	0	0	0	1	0	0	0	9099	1116	39	1	197	1	LRRC56	11	541550	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43628	541550	134464966	11571	19722											
CDHR5	53841	broad.mit.edu	37	chr11	621851	621851	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcttaaaggggaattcGggggcattgtcattgacgtc	14	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	621851	T	T	621851	2	4	9	1	0	0	0	0	0	0	0	1	3152	1103	39	1		1	CDHR5	11	621851	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	80301	621851	134384665	11572	19723											
TMEM80	283232	broad.mit.edu	37	chr11	700593	700593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccaggttacttatgttcCgtccgcgcctctgctcttca	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	700593	A	A	700593	1	1	9	0	1	0	0	0	0	0	0	0	16327	667	23	1		1	TMEM80	11	700593	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	78742	700593	134305923	11573	19724											
TMEM80	283232	broad.mit.edu	37	chr11	700727	700727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtggactgttaacacCgtgaagaacctgtcctaaga	12	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	700727	A	A	700727	1	1	9	0	1	0	0	0	0	0	0	0	16327	667	23	1		1	TMEM80	11	700727	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	700727	134305789	11574	19725											
POLR2L	5441	broad.mit.edu	37	chr11	840407	840407	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcataattgagcagcttctCgatcaggtccacgtgggcca	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	840407	A	A	840407	4	1	9	1	0	0	0	0	0	1	0	0	12322	893	31	3	38	3	POLR2L	11	840407	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	139680	840407	134166109	11575	19726											
CHID1	66005	broad.mit.edu	37	chr11	900049	900049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctcctctatctcatcCtcactgtctaagacgttccg	5	16	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	900049	A	A	900049	3	1	9	1	0	0	0	0	1	0	0	0	3376	680	24	2	712	2	CHID1	11	900049	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59642	900049	134106467	11576	19727											
MUC6	4588	broad.mit.edu	37	chr11	1015931	1015931	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggatacccgtcaccccCgaggtgagtgacacaaagcc	13	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1015931	A	A	1015931	2	1	9	1	0	0	0	0	0	0	0	1	10074	639	23	1		1	MUC6	11	1015931	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	115882	1015931	133990585	11577	19728											
MUC6	4588	broad.mit.edu	37	chr11	1017100	1017100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggggattggctggtccCactggtggtcggtgtcattg	17	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1017100	A	A	1017100	3	1	9	1	0	0	0	0	1	0	0	0	10074	594	21	2	1630	2	MUC6	11	1017100	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1169	1017100	133989416	11578	19729											
MUC6	4588	broad.mit.edu	37	chr11	1017111	1017111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggtcccactggtggtcGgtgtcattggtggggctgtg	19	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1017111	T	T	1017111	3	4	9	1	0	0	0	0	1	0	0	0	10074	1116	39	1	1641	1	MUC6	11	1017111	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	1017111	133989405	11579	19730											
MUC6	4588	broad.mit.edu	37	chr11	1017647	1017647	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggttcctgtactggtGgggttgggggtgatgttggt	22	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1017647	T	T	1017647	2	4	9	1	0	0	0	0	0	0	0	1	10074	1335	47	2		2	MUC6	11	1017647	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	536	1017647	133988869	11580	19731											
MUC6	4588	broad.mit.edu	37	chr11	1017737	1017737	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagggatgtagaggttttGgctgtgtttaatgagctcag	15	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1017737	T	T	1017737	2	4	9	1	0	0	0	0	0	0	0	1	10074	1335	47	2		2	MUC6	11	1017737	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	90	1017737	133988779	11581	19732											
MUC6	4588	broad.mit.edu	37	chr11	1018439	1018439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgagtacttggagtcacCaaggaggtggagaaaggtgg	18	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1018439	A	A	1018439	3	1	9	1	0	0	0	0	1	0	0	0	10074	593	21	2	2969	2	MUC6	11	1018439	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	702	1018439	133988077	11582	19733											
MUC6	4588	broad.mit.edu	37	chr11	1018565	1018565	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagggacgggactcccCgccgtaggcggggagtgtgt	20	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1018565	A	A	1018565	2	1	9	1	0	0	0	0	0	0	0	1	10074	639	23	1		1	MUC6	11	1018565	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	126	1018565	133987951	11583	19734											
MUC6	4588	broad.mit.edu	37	chr11	1025253	1025253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtcaggttgtacctccCggggatgctgatgtccacga	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1025253	A	A	1025253	3	1	9	1	0	0	0	0	1	0	0	0	10074	652	23	1	4449	1	MUC6	11	1025253	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6688	1025253	133981263	11584	19735											
MUC5B	727897	broad.mit.edu	37	chr11	1267050	1267050	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccggccaccagctctacGgccacgccctcctccactcc	6	24	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1267050	T	T	1267050	2	4	9	1	0	0	0	0	0	0	0	1	10073	1103	39	1		1	MUC5B	11	1267050	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	241797	1267050	133739466	11585	19736											
MUC5B	727897	broad.mit.edu	37	chr11	1267638	1267638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccaccgtgacggtgccCaccggatccacggccaccgc	11	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1267638	A	A	1267638	2	1	9	1	0	0	0	0	0	0	0	1	10073	581	21	2		2	MUC5B	11	1267638	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	588	1267638	133738878	11586	19737											
MUC5B	727897	broad.mit.edu	37	chr11	1270339	1270339	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accctagcagcaggaccaccGagtcacccccttccccaggg	9	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1270339	T	T	1270339	4	4	9	1	0	0	0	0	0	1	0	0	10073	1059	37	3	12360	3	MUC5B	11	1270339	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2701	1270339	133736177	11587	19738											
MUC5B	727897	broad.mit.edu	37	chr11	1272622	1272622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactggatccacggccaccCtgtcctccaccccagggacc	8	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1272622	A	A	1272622	3	1	9	1	0	0	0	0	1	0	0	0	10073	680	24	2	14643	2	MUC5B	11	1272622	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2283	1272622	133733894	11588	19739											
BRSK2	9024	broad.mit.edu	37	chr11	1459543	1459543	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcccatgcaggtggagcGggagatcgcgatcctgaagc	14	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1459543	T	T	1459543	3	4	9	1	0	0	0	0	1	0	0	0	1533	1116	39	1	204	1	BRSK2	11	1459543	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	186921	1459543	133546973	11589	19740											
BRSK2	9024	broad.mit.edu	37	chr11	1480407	1480407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccctccctcctctctcCattctgtactccagacacca	2	21	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1480407	A	A	1480407	1	1	9	0	1	0	0	0	0	0	0	0	1533	609	21	2		2	BRSK2	11	1480407	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20864	1480407	133526109	11590	19741											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1605667	1605667	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgcactggcagcacacGgggacacagcaactggactg	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1605667	T	T	1605667	2	4	9	1	0	0	0	0	0	0	0	1	8630	1103	39	1		1	KRTAP5-1	11	1605667	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	125260	1605667	133400849	11591	19742											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1605732	1605732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattggcaacaggatgaccCacagcctgaggaacagcagc	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1605732	A	A	1605732	3	1	9	1	0	0	0	0	1	0	0	0	8630	594	21	2	92	2	KRTAP5-1	11	1605732	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	1605732	133400784	11592	19743											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1605789	1605789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgggagcaggatgaccCgcagcctcccttagaccccg	12	16	0	2	rs150749814		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1605789	A	A	1605789	3	1	9	1	0	0	0	0	1	0	0	0	8630	652	23	1	149	1	KRTAP5-1	11	1605789	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	1605789	133400727	11593	19744											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1606345	1606345	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggcttgcagcagcagacGggcacacagcagctggagcc	15	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1606345	T	T	1606345	2	4	9	1	0	0	0	0	0	0	0	1	8630	1103	39	1		1	KRTAP5-1	11	1606345	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	556	1606345	133400171	11594	19745											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651347	1651347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggggctgtggctcttgcGggggctccaagagaggctgt	19	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1651347	T	T	1651347	3	4	9	1	0	0	0	0	1	0	0	0	8636	1116	39	1	279	1	KRTAP5-5	11	1651347	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45002	1651347	133355169	11595	19746											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651760	1651760	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtccagctgctgtgtcccCgtgtgctgccagtgtaagat	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1651760	A	A	1651760	2	1	9	1	0	0	0	0	0	0	0	1	8636	639	23	1		1	KRTAP5-5	11	1651760	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	413	1651760	133354756	11596	19747											
KRTAP5-6	440023	broad.mit.edu	37	chr11	1718568	1718568	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccagctgctgtgtgccCatctgctgctgcaagcccgt	13	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1718568	A	A	1718568	2	1	9	1	0	0	0	0	0	0	0	1	8637	581	21	2		2	KRTAP5-6	11	1718568	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66808	1718568	133287948	11597	19748											
CTSD	1509	broad.mit.edu	37	chr11	1778748	1778748	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctctccactttgacaccGcccagggcagaggctgacga	11	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1778748	A	A	1778748	2	1	9	1	0	0	0	0	0	0	0	1	4066	1074	38	4		4	CTSD	11	1778748	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60180	1778748	133227768	11598	19749											
TNNT3	7140	broad.mit.edu	37	chr11	1947660	1947660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattgacctctgacccgcGgttttgcctcttgttccgtg	9	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1947660	T	T	1947660	1	4	9	0	1	0	0	0	0	0	0	0	16455	1131	39	1		1	TNNT3	11	1947660	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	168912	1947660	133058856	11599	19750											
IGF2	3481	broad.mit.edu	37	chr11	2154133	2154133	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggaaccgagagattttcGggatggaacctgatggaaac	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2154133	T	T	2154133	1	4	9	0	1	0	0	0	0	0	0	0	7642	1131	39	1		1	IGF2	11	2154133	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	206473	2154133	132852383	11600	19751											
SLC22A18	5002	broad.mit.edu	37	chr11	2943353	2943353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacccagggcctggtcatcGggcagctgagcagccacttc	13	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2943353	T	T	2943353	3	4	9	1	0	0	0	0	1	0	0	0	14562	1116	39	1	916	1	SLC22A18	11	2943353	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	789220	2943353	132063163	11601	19752											
NAP1L4	4676	broad.mit.edu	37	chr11	2985106	2985106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagctacagccaggctaacGggttacgaacagtgctccct	10	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2985106	T	T	2985106	1	4	9	0	1	0	0	0	0	0	0	0	10253	1131	39	1		1	NAP1L4	11	2985106	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41753	2985106	132021410	11602	19753											
CARS	833	broad.mit.edu	37	chr11	3023269	3023269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggggaatcttcatcttGgccagctttgctgcctagaa	12	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3023269	T	T	3023269	2	4	9	1	0	0	0	0	0	0	0	1	2683	1335	47	2		2	CARS	11	3023269	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38163	3023269	131983247	11603	19754											
CARS	833	broad.mit.edu	37	chr11	3059394	3059394	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagcatctgctttttatcGggatccgtggtctcatttaa	9	9	2	0	rs3205318	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3059394	T	T	3059394	2	4	9	1	0	0	0	0	0	0	0	1	2683	1103	39	1		1	CARS	11	3059394	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36125	3059394	131947122	11604	19755											
OSBPL5	114879	broad.mit.edu	37	chr11	3141804	3141804	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagatgagcagcaccccCggcttcagcacgcaccacag	10	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3141804	A	A	3141804	2	1	9	1	0	0	0	0	0	0	0	1	11374	639	23	1		1	OSBPL5	11	3141804	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82410	3141804	131864712	11605	19756											
ART5	116969	broad.mit.edu	37	chr11	3660010	3660010	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtcatatgaaggtcaccCgttcccagggctcctaagtg	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3660010	A	A	3660010	2	1	9	1	0	0	0	0	0	0	0	1	1004	639	23	1		1	ART5	11	3660010	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	518206	3660010	131346506	11606	19757											
ART5	116969	broad.mit.edu	37	chr11	3660797	3660797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtctcccgaaggccccGgggattattgtgtaaggaca	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3660797	T	T	3660797	1	4	9	0	1	0	0	0	0	0	0	0	1004	1131	39	1		1	ART5	11	3660797	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	787	3660797	131345719	11607	19758											
NUP98	4928	broad.mit.edu	37	chr11	3720450	3720450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtacaggatagccagcGggagaaagctcttcttcgct	13	10	2	1	rs149708817		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3720450	T	T	3720450	3	4	9	1	0	0	0	0	1	0	0	0	10868	1116	39	1	1567	1	NUP98	11	3720450	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59653	3720450	131286066	11608	19759											
NUP98	4928	broad.mit.edu	37	chr11	3800145	3800145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgcaaaggcattgttttGggatgagaagagactggtcc	14	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3800145	T	T	3800145	3	4	9	1	0	0	0	0	1	0	0	0	10868	1357	47	2	5281	2	NUP98	11	3800145	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	79695	3800145	131206371	11609	19760											
STIM1	6786	broad.mit.edu	37	chr11	4103418	4103418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttggctgcctaggttcGggaggccttgaggaaagcag	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4103418	T	T	4103418	3	4	9	1	0	0	0	0	1	0	0	0	15401	1116	39	1	1004	1	STIM1	11	4103418	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	303273	4103418	130903098	11610	19761											
RRM1	6240	broad.mit.edu	37	chr11	4141103	4141103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattccaatggccttgtacCgatgctgagagtatataaca	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4141103	A	A	4141103	3	1	9	1	0	0	0	0	1	0	0	0	13792	652	23	1	855	1	RRM1	11	4141103	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37685	4141103	130865413	11611	19762											
RRM1	6240	broad.mit.edu	37	chr11	4144502	4144502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagacggaaacaggcacccCgtatatgctctacaaagatt	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4144502	A	A	4144502	3	1	9	1	0	0	0	0	1	0	0	0	13792	652	23	1	1254	1	RRM1	11	4144502	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3399	4144502	130862014	11612	19763											
RRM1	6240	broad.mit.edu	37	chr11	4153625	4153625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaccagcaacatctatactCgcagagtcttgtcaggagaa	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4153625	A	A	4153625	3	1	9	1	0	0	0	0	1	0	0	0	13792	884	31	3	1941	3	RRM1	11	4153625	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9123	4153625	130852891	11613	19764											
OR52K2	119774	broad.mit.edu	37	chr11	4471275	4471275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgcctctcaggaggccCgctacaaggcatttgggaca	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4471275	A	A	4471275	3	1	9	1	0	0	0	0	1	0	0	0	11218	652	23	1	708	1	OR52K2	11	4471275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	317650	4471275	130535241	11614	19765											
OR52K1	390036	broad.mit.edu	37	chr11	4510932	4510932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcatgcaccgtgtagccCgccatgctgcccctcgtgtc	10	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4510932	A	A	4510932	3	1	9	1	0	0	0	0	1	0	0	0	11217	652	23	1	804	1	OR52K1	11	4510932	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39657	4510932	130495584	11615	19766											
OR52M1	119772	broad.mit.edu	37	chr11	4566688	4566688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgggaatcttctggttcGgtgcttgtgacattggcctg	13	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4566688	T	T	4566688	3	4	9	1	0	0	0	0	1	0	0	0	11220	1116	39	1	270	1	OR52M1	11	4566688	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55756	4566688	130439828	11616	19767											
OR52I2	143502	broad.mit.edu	37	chr11	4608708	4608708	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttagcatgtgctgacccCgtgcccagcagtctctacag	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4608708	A	A	4608708	2	1	9	1	0	0	0	0	0	0	0	1	11215	639	23	1		1	OR52I2	11	4608708	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42020	4608708	130397808	11617	19768											
OR52I2	143502	broad.mit.edu	37	chr11	4609034	4609034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaggaccaaacaactgcGggagagaatatggagttatc	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4609034	T	T	4609034	3	4	9	1	0	0	0	0	1	0	0	0	11215	1116	39	1	994	1	OR52I2	11	4609034	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	326	4609034	130397482	11618	19769											
OR52I1	390037	broad.mit.edu	37	chr11	4615517	4615517	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcctcctccgtggtaccCaagatggtgagcatcttctg	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4615517	A	A	4615517	2	1	9	1	0	0	0	0	0	0	0	1	11214	581	21	2		2	OR52I1	11	4615517	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6483	4615517	130390999	11619	19770											
TRIM68	55128	broad.mit.edu	37	chr11	4624459	4624459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacacaaactcctttccCcacgaggcaacctgccttcc	5	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4624459	A	A	4624459	1	1	9	0	1	0	0	0	0	0	0	0	16666	638	22	2		2	TRIM68	11	4624459	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8942	4624459	130382057	11620	19771											
OR51E2	81285	broad.mit.edu	37	chr11	4702997	4702997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcacttgcctcccacagcCtgcaagtccttgtcacagct	8	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4702997	A	A	4702997	3	1	9	1	0	0	0	0	1	0	0	0	11189	680	24	2	21	2	OR51E2	11	4702997	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78538	4702997	130303519	11621	19772											
OR51F1	256892	broad.mit.edu	37	chr11	4790740	4790740	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctggaattagtgagaatGgtagtgtacctcagagggtc	13	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4790740	T	T	4790740	2	4	9	1	0	0	0	0	0	0	0	1	11190	1335	47	2		2	OR51F1	11	4790740	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	87743	4790740	130215776	11622	19773											
OR51F2	119694	broad.mit.edu	37	chr11	4842994	4842994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttactttcatggagtctGgggttctactggccatggcc	12	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4842994	T	T	4842994	3	4	9	1	0	0	0	0	1	0	0	0	11191	1348	47	2	381	2	OR51F2	11	4842994	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52254	4842994	130163522	11623	19774											
OR51A4	401666	broad.mit.edu	37	chr11	4967906	4967906	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatccctatttgggcaactCtgacagttgtcaggattgag	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4967906	A	A	4967906	3	1	9	1	0	0	0	0	1	0	0	0	11181	913	32	3	518	3	OR51A4	11	4967906	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	124912	4967906	130038610	11624	19775											
MMP26	56547	broad.mit.edu	37	chr11	5012015	5012015	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggatatgtatatgccCtgtgtaaaggacaaagggtt	12	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5012015	A	A	5012015	1	1	9	0	1	0	0	0	0	0	0	0	9757	696	24	2		2	MMP26	11	5012015	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44109	5012015	129994501	11625	19776											
MMP26	56547	broad.mit.edu	37	chr11	5012627	5012627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatggttggccctttgatGggccaggtggtatcttaggc	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5012627	T	T	5012627	3	4	9	1	0	0	0	0	1	0	0	0	9757	1348	47	2	510	2	MMP26	11	5012627	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	612	5012627	129993889	11626	19777											
OR51L1	119682	broad.mit.edu	37	chr11	5020692	5020692	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttgggagttgtacttccCacacctttgctactgagaca	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5020692	A	A	5020692	2	1	9	1	0	0	0	0	0	0	0	1	11196	581	21	2		2	OR51L1	11	5020692	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8065	5020692	129985824	11627	19778											
HBG2	3048	broad.mit.edu	37	chr11	5274496	5274496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgaaagctctgcatcatGggcagtgagctcagtggtat	12	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5274496	T	T	5274496	1	4	9	0	1	0	0	0	0	0	0	0	7049	1363	47	2		2	HBG2	11	5274496	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	253804	5274496	129732020	11628	19779											
OR51B6	390058	broad.mit.edu	37	chr11	5372945	5372945	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggcagctacagacctcGgagtgacattgaccacaatg	11	10	0	3	rs143848596	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5372945	T	T	5372945	4	4	9	1	0	0	0	0	0	1	0	0	11186	1117	39	1	210	1	OR51B6	11	5372945	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98449	5372945	129633571	11629	19780											
OR51M1	390059	broad.mit.edu	37	chr11	5411028	5411028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatgatgtcctttgacCgccttgtggccatctgccac	8	15	2	2	rs74683499	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5411028	A	A	5411028	3	1	9	1	0	0	0	0	1	0	0	0	11197	652	23	1	402	1	OR51M1	11	5411028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38083	5411028	129595488	11630	19781											
OR51M1	390059	broad.mit.edu	37	chr11	5411115	5411115	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcctaattgtcatcttcCggggacctgtggccactatc	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5411115	A	A	5411115	2	1	9	1	0	0	0	0	0	0	0	1	11197	643	23	1		1	OR51M1	11	5411115	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	5411115	129595401	11631	19782											
OR51M1	390059	broad.mit.edu	37	chr11	5411137	5411137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacctgtggccactatccCtattgtcctcctcctgaagg	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5411137	A	A	5411137	3	1	9	1	0	0	0	0	1	0	0	0	11197	681	24	2	511	2	OR51M1	11	5411137	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	5411137	129595379	11632	19783											
OR52D1	390066	broad.mit.edu	37	chr11	5510396	5510396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctttgttgggctattcCgtagtgtggctattgtctcc	12	8	1	0	rs7935144	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5510396	A	A	5510396	3	1	9	1	0	0	0	0	1	0	0	0	11208	652	23	1	462	1	OR52D1	11	5510396	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99259	5510396	129496120	11633	19784											
OR52D1	390066	broad.mit.edu	37	chr11	5510501	5510501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagcatatgggcattgccCgactggcctgtgccaacatc	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5510501	A	A	5510501	2	1	9	1	0	0	0	0	0	0	0	1	11208	644	23	1		1	OR52D1	11	5510501	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	5510501	129496015	11634	19785											
TRIM6-TRIM34	445372	broad.mit.edu	37	chr11	5618134	5618134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcattccccagatgtgcGggtcagagaggtatgtctac	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5618134	T	T	5618134	3	4	9	1	0	0	0	0	1	0	0	0	16659	1116	39	1	9	1	TRIM6-TRIM34	11	5618134	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107633	5618134	129388382	11635	19786											
TRIM6-TRIM34	445372	broad.mit.edu	37	chr11	5618155	5618155	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagagaggtatgtctacCgttctgttgactggctctta	12	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5618155	A	A	5618155	1	1	9	0	1	0	0	0	0	0	0	0	16659	667	23	1		1	TRIM6-TRIM34	11	5618155	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	5618155	129388361	11636	19787											
TRIM6-TRIM34	445372	broad.mit.edu	37	chr11	5656045	5656045	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttggtgagagagctcatctCagatgtggagtgtcggagtc	16	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5656045	A	A	5656045	4	1	9	1	0	0	0	0	0	1	0	0	16659	838	29	3	1804	3	TRIM6-TRIM34	11	5656045	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37890	5656045	129350471	11637	19788											
TRIM5	85363	broad.mit.edu	37	chr11	5700420	5700420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgagaaaggaatcacacCatagtcaagctatgaggttt	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5700420	A	A	5700420	1	1	9	0	1	0	0	0	0	0	0	0	16650	609	21	2		2	TRIM5	11	5700420	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44375	5700420	129306096	11638	19789											
TRIM5	85363	broad.mit.edu	37	chr11	5701038	5701038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaacgtgtggtgaccacGgtgctcctgagaccgctcac	14	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5701038	T	T	5701038	3	4	9	1	0	0	0	0	1	0	0	0	16650	1116	39	1	1378	1	TRIM5	11	5701038	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	618	5701038	129305478	11639	19790											
TRIM5	85363	broad.mit.edu	37	chr11	5701080	5701080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccagcaaatgaccttccCgtcctcctgacagaagagta	8	13	0	4	rs146215995		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5701080	A	A	5701080	3	1	9	1	0	0	0	0	1	0	0	0	16650	652	23	1	1420	1	TRIM5	11	5701080	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	5701080	129305436	11640	19791											
OR52N1	79473	broad.mit.edu	37	chr11	5809111	5809111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgagaattgtcctttccCttaagaaagaacctaatgac	6	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5809111	A	A	5809111	3	1	9	1	0	0	0	0	1	0	0	0	11221	680	24	2	29	2	OR52N1	11	5809111	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108031	5809111	129197405	11641	19792											
OR52N1	79473	broad.mit.edu	37	chr11	5809246	5809246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagaggaatggtgtgtccCccaaaatggtgtgtaaagaa	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5809246	A	A	5809246	2	1	9	1	0	0	0	0	0	0	0	1	11221	610	22	2		2	OR52N1	11	5809246	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	135	5809246	129197270	11642	19793											
OR52E6	390078	broad.mit.edu	37	chr11	5862711	5862711	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaggctgatgattttgctGgtgaggatcatggtgtacca	14	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5862711	C	C	5862711	2	2	9	1	0	0	0	0	0	0	0	1	11211	1335	47	4		4	OR52E6	11	5862711	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53465	5862711	129143805	11643	19794											
OR52E8	390079	broad.mit.edu	37	chr11	5878112	5878112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataatatgtatatactgtGggatattatggccaaaacga	8	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5878112	T	T	5878112	3	4	9	1	0	0	0	0	1	0	0	0	11212	1348	47	2	134	2	OR52E8	11	5878112	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15401	5878112	129128404	11644	19795											
OR56A3	390083	broad.mit.edu	37	chr11	5968872	5968872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggcccatcagcttccCtgcctgcttcctccagatgt	7	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5968872	A	A	5968872	3	1	9	1	0	0	0	0	1	0	0	0	11228	681	24	2	298	2	OR56A3	11	5968872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90760	5968872	129037644	11645	19796											
OR56A1	120796	broad.mit.edu	37	chr11	6048406	6048406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctcaatgacattttcccCacagtaatggagcagggaag	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6048406	A	A	6048406	3	1	9	1	0	0	0	0	1	0	0	0	11227	594	21	2	431	2	OR56A1	11	6048406	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79534	6048406	128958110	11646	19797											
OR56B4	196335	broad.mit.edu	37	chr11	6129007	6129007	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgagactgaggcacccattCcatggatacctccaccagtg	9	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6129007	T	T	6129007	1	4	9	0	1	0	0	0	0	0	0	0	11232	870	30	4		4	OR56B4	11	6129007	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	80601	6129007	128877509	11647	19798											
FAM160A2	84067	broad.mit.edu	37	chr11	6244383	6244383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactcccagccagtcttccCgtcgcagacagtgccaatca	8	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6244383	A	A	6244383	3	1	9	1	0	0	0	0	1	0	0	0	5515	652	23	1	2133	1	FAM160A2	11	6244383	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115376	6244383	128762133	11648	19799											
FAM160A2	84067	broad.mit.edu	37	chr11	6244841	6244841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagccagggggtgctaaccGggcagaagtaagagtgatcc	15	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6244841	T	T	6244841	3	4	9	1	0	0	0	0	1	0	0	0	5515	1130	39	1	2224	1	FAM160A2	11	6244841	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	458	6244841	128761675	11649	19800											
CNGA4	1262	broad.mit.edu	37	chr11	6261342	6261342	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggacaagggtaggatctcGagtcgctacgttcgcacctg	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6261342	T	T	6261342	2	4	9	1	0	0	0	0	0	0	0	1	3631	1045	37	3		3	CNGA4	11	6261342	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16501	6261342	128745174	11650	19801											
HPX	3263	broad.mit.edu	37	chr11	6458371	6458371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagggccatggtgggtaCtgttcccatggccagtccca	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6458371	A	A	6458371	3	1	9	1	0	0	0	0	1	0	0	0	7413	565	20	3	664	3	HPX	11	6458371	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	197029	6458371	128548145	11651	19802											
DNHD1	144132	broad.mit.edu	37	chr11	6530326	6530326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacctggtaggtaatgacGgatatgtgatttggggggaa	15	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6530326	T	T	6530326	1	4	9	0	1	0	0	0	0	0	0	0	4708	1131	39	1		1	DNHD1	11	6530326	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	71955	6530326	128476190	11652	19803											
DNHD1	144132	broad.mit.edu	37	chr11	6588485	6588485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgagagcacacctgaccCgccagctgctgggcagcacc	11	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6588485	A	A	6588485	3	1	9	1	0	0	0	0	1	0	0	0	4708	652	23	1	11889	1	DNHD1	11	6588485	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58159	6588485	128418031	11653	19804											
DNHD1	144132	broad.mit.edu	37	chr11	6593220	6593220	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacccctgtcttgagccCgtctaccaaaataaagttgt	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6593220	A	A	6593220	1	1	9	0	1	0	0	0	0	0	0	0	4708	667	23	1		1	DNHD1	11	6593220	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	4735	6593220	128413296	11654	19805											
DCHS1	8642	broad.mit.edu	37	chr11	6649905	6649905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacatctggatcagaggccCgaagcatggtaagggtctgg	14	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6649905	A	A	6649905	3	1	9	1	0	0	0	0	1	0	0	0	4320	652	23	1	4614	1	DCHS1	11	6649905	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56685	6649905	128356611	11655	19806											
DCHS1	8642	broad.mit.edu	37	chr11	6661249	6661249	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatagtccagtgaggcagcCgtagtgataatgcctgaggt	13	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6661249	A	A	6661249	2	1	9	1	0	0	0	0	0	0	0	1	4320	639	23	1		1	DCHS1	11	6661249	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11344	6661249	128345267	11656	19807											
MRPL17	63875	broad.mit.edu	37	chr11	6703545	6703545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgatccaaactccgatttGggatctgcagcattcttgtg	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6703545	T	T	6703545	3	4	9	1	0	0	0	0	1	0	0	0	9876	1348	47	2	199	2	MRPL17	11	6703545	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42296	6703545	128302971	11657	19808											
OR2AG2	338755	broad.mit.edu	37	chr11	6789274	6789274	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcagtatgtattttccCaggaccctcctcaaggcccg	9	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6789274	A	A	6789274	2	1	9	1	0	0	0	0	0	0	0	1	11079	581	21	2		2	OR2AG2	11	6789274	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85729	6789274	128217242	11658	19809											
OR2AG2	338755	broad.mit.edu	37	chr11	6789444	6789444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagctccatagaacatccCgaccacaatcaggtgggaag	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6789444	A	A	6789444	3	1	9	1	0	0	0	0	1	0	0	0	11079	652	23	1	209	1	OR2AG2	11	6789444	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	170	6789444	128217072	11659	19810											
OR6A2	8590	broad.mit.edu	37	chr11	6816106	6816106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcatacagtacagagacCaacttgttggtgtcaaaagc	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6816106	A	A	6816106	3	1	9	1	0	0	0	0	1	0	0	0	11280	593	21	2	153	2	OR6A2	11	6816106	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26662	6816106	128190410	11660	19811											
OR10A5	144124	broad.mit.edu	37	chr11	6867036	6867036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctatttggttactctgaaGggaaacagcctcatcattct	7	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6867036	T	T	6867036	3	4	9	1	0	0	0	0	1	0	0	0	10987	991	35	2	125	2	OR10A5	11	6867036	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50930	6867036	128139480	11661	19812											
OR10A5	144124	broad.mit.edu	37	chr11	6867064	6867064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcatcattctggttaccCtagctgaccccatgctacac	6	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6867064	A	A	6867064	3	1	9	1	0	0	0	0	1	0	0	0	10987	680	24	2	153	2	OR10A5	11	6867064	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	6867064	128139452	11662	19813											
OR2D2	120776	broad.mit.edu	37	chr11	6912919	6912919	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcatagaaaacagacacCgatttttcctgctgtttgga	8	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6912919	A	A	6912919	2	1	9	1	0	0	0	0	0	0	0	1	11088	639	23	1		1	OR2D2	11	6912919	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45855	6912919	128093597	11663	19814											
OR2D3	120775	broad.mit.edu	37	chr11	6942394	6942394	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcatttatctgctgacCgtgcttggaaaccagctcat	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6942394	A	A	6942394	2	1	9	1	0	0	0	0	0	0	0	1	11089	639	23	1		1	OR2D3	11	6942394	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29475	6942394	128064122	11664	19815											
ZNF215	7762	broad.mit.edu	37	chr11	6953614	6953614	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagcaggaaaccaacccCgtcgtggagacacatgactc	11	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6953614	A	A	6953614	2	1	9	1	0	0	0	0	0	0	0	1	17897	639	23	1		1	ZNF215	11	6953614	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11220	6953614	128052902	11665	19816											
ZNF214	7761	broad.mit.edu	37	chr11	7022649	7022649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtctttggaatctgtccCttgaacagtttccccatagt	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7022649	A	A	7022649	3	1	9	1	0	0	0	0	1	0	0	0	17896	681	24	2	1559	2	ZNF214	11	7022649	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69035	7022649	127983867	11666	19817											
ZNF214	7761	broad.mit.edu	37	chr11	7022663	7022663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcccttgaacagtttccCcatagttctgattctcatac	5	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7022663	A	A	7022663	3	1	9	1	0	0	0	0	1	0	0	0	17896	623	22	2	1573	2	ZNF214	11	7022663	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	7022663	127983853	11667	19818											
ZNF214	7761	broad.mit.edu	37	chr11	7023927	7023927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctattccctatgagacGggataactttacctactgac	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7023927	T	T	7023927	1	4	9	0	1	0	0	0	0	0	0	0	17896	1131	39	1		1	ZNF214	11	7023927	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1264	7023927	127982589	11668	19819											
ZNF214	7761	broad.mit.edu	37	chr11	7023981	7023981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctcccacatgacctccCtgtagagtcttttttgagaa	7	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7023981	A	A	7023981	3	1	9	1	0	0	0	0	1	0	0	0	17896	681	24	2	1742	2	ZNF214	11	7023981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	7023981	127982535	11669	19820											
NLRP14	338323	broad.mit.edu	37	chr11	7064375	7064375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtccccctagtgtgctGggccgcttgtacttgtctga	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7064375	T	T	7064375	3	4	9	1	0	0	0	0	1	0	0	0	10571	1357	47	2	1128	2	NLRP14	11	7064375	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40394	7064375	127942141	11670	19821											
NLRP14	338323	broad.mit.edu	37	chr11	7064514	7064514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctctcctagtctaccCaaccaagcccagctgagaag	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7064514	A	A	7064514	2	1	9	1	0	0	0	0	0	0	0	1	10571	581	21	2		2	NLRP14	11	7064514	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	139	7064514	127942002	11671	19822											
SYT9	143425	broad.mit.edu	37	chr11	7439309	7439309	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtctttgatgtccctccCgagaacattgaccaaatcca	6	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7439309	A	A	7439309	2	1	9	1	0	0	0	0	0	0	0	1	15600	639	23	1		1	SYT9	11	7439309	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	374795	7439309	127567207	11672	19823											
PPFIBP2	8495	broad.mit.edu	37	chr11	7614444	7614444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaggggataaggagtccCtcatattgcaggtgggtact	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7614444	A	A	7614444	3	1	9	1	0	0	0	0	1	0	0	0	12410	681	24	2	371	2	PPFIBP2	11	7614444	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175135	7614444	127392072	11673	19824											
PPFIBP2	8495	broad.mit.edu	37	chr11	7650713	7650713	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcggatagaggagcttacGgggctgttaaaccagtaccg	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7650713	T	T	7650713	2	4	9	1	0	0	0	0	0	0	0	1	12410	1103	39	1		1	PPFIBP2	11	7650713	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36269	7650713	127355803	11674	19825											
PPFIBP2	8495	broad.mit.edu	37	chr11	7652163	7652163	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgcttgcagggccttcGgagagaactctctcaatcaa	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7652163	T	T	7652163	2	4	9	1	0	0	0	0	0	0	0	1	12410	1103	39	1		1	PPFIBP2	11	7652163	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1450	7652163	127354353	11675	19826											
PPFIBP2	8495	broad.mit.edu	37	chr11	7660931	7660931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggctgacagttaagtcGgtatctctctctttctctca	8	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7660931	T	T	7660931	1	4	9	0	1	0	0	0	0	0	0	0	12410	1131	39	1		1	PPFIBP2	11	7660931	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8768	7660931	127345585	11676	19827											
OR5P3	120066	broad.mit.edu	37	chr11	7847399	7847399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaattatgctgatattacCcattaaggtgacaacataaa	5	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7847399	A	A	7847399	3	1	9	1	0	0	0	0	1	0	0	0	11273	623	22	2	817	2	OR5P3	11	7847399	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	186468	7847399	127159117	11677	19828											
EIF3F	8665	broad.mit.edu	37	chr11	8013307	8013307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaggattatataacacatGgacgattctctctttcacag	6	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8013307	T	T	8013307	1	4	9	0	1	0	0	0	0	0	0	0	5058	1363	47	2		2	EIF3F	11	8013307	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	165908	8013307	126993209	11678	19829											
EIF3F	8665	broad.mit.edu	37	chr11	8014492	8014492	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatccacgagtactacagcCgagaggcccccaaccccatc	8	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8014492	A	A	8014492	2	1	9	1	0	0	0	0	0	0	0	1	5058	644	23	1		1	EIF3F	11	8014492	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1185	8014492	126992024	11679	19830											
EIF3F	8665	broad.mit.edu	37	chr11	8016865	8016865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctggttaaccaagtacCgaaaatagttcccgatgact	9	10	0	1	rs146329203		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8016865	A	A	8016865	3	1	9	1	0	0	0	0	1	0	0	0	5058	652	23	1	973	1	EIF3F	11	8016865	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2373	8016865	126989651	11680	19831											
TUB	7275	broad.mit.edu	37	chr11	8123099	8123099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatggattacaactaccCgctgtgtgcactgcaggcct	9	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8123099	A	A	8123099	3	1	9	1	0	0	0	0	1	0	0	0	16868	652	23	1	1711	1	TUB	11	8123099	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106234	8123099	126883417	11681	19832											
RIC3	79608	broad.mit.edu	37	chr11	8158907	8158907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagaaatagtctgagtccCgttacatgaaaacctacctc	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8158907	A	A	8158907	1	1	9	0	1	0	0	0	0	0	0	0	13463	667	23	1		1	RIC3	11	8158907	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35808	8158907	126847609	11682	19833											
RIC3	79608	broad.mit.edu	37	chr11	8159831	8159831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacttactaattttcctgtGggtgtttccaggcatggcag	11	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8159831	T	T	8159831	3	4	9	1	0	0	0	0	1	0	0	0	13463	1348	47	2	707	2	RIC3	11	8159831	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	924	8159831	126846685	11683	19834											
RIC3	79608	broad.mit.edu	37	chr11	8159886	8159886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctgcagttgttttcccCtttgagagctgagaattgaa	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8159886	A	A	8159886	3	1	9	1	0	0	0	0	1	0	0	0	13463	680	24	2	762	2	RIC3	11	8159886	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	8159886	126846630	11684	19835											
STK33	65975	broad.mit.edu	37	chr11	8494771	8494771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttctgtaaagttgcccCgaccccattgttgctgagat	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8494771	A	A	8494771	3	1	9	1	0	0	0	0	1	0	0	0	15418	652	23	1	1310	1	STK33	11	8494771	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	334885	8494771	126511745	11685	19836											
RPL27A	6157	broad.mit.edu	37	chr11	8705920	8705920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttcacattcacctaccCacaaactagtggatgataaa	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8705920	A	A	8705920	1	1	9	0	1	0	0	0	0	0	0	0	13687	609	21	2		2	RPL27A	11	8705920	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	211149	8705920	126300596	11686	19837											
RPL27A	6157	broad.mit.edu	37	chr11	8707143	8707143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctagggatttagaaagtGggttggcagtctttcctcac	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8707143	T	T	8707143	1	4	9	0	1	0	0	0	0	0	0	0	13687	1363	47	2		2	RPL27A	11	8707143	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1223	8707143	126299373	11687	19838											
ST5	6764	broad.mit.edu	37	chr11	8717946	8717946	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgtgggtgaaaaaattaGagaagagagctgataaccaa	12	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8717946	T	T	8717946	1	4	9	0	1	0	0	0	0	0	0	0	15338	957	33	3		3	ST5	11	8717946	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10803	8717946	126288570	11688	19839											
ST5	6764	broad.mit.edu	37	chr11	8751459	8751459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatttaaaagaaagccacGgtattcagctacaacacacc	5	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8751459	T	T	8751459	1	4	9	0	1	0	0	0	0	0	0	0	15338	1131	39	1		1	ST5	11	8751459	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	33513	8751459	126255057	11689	19840											
ST5	6764	broad.mit.edu	37	chr11	8751542	8751542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtccttcttgggtctcCgggtgactggcggggctggg	18	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8751542	A	A	8751542	3	1	9	1	0	0	0	0	1	0	0	0	15338	652	23	1	2190	1	ST5	11	8751542	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	8751542	126254974	11690	19841											
ST5	6764	broad.mit.edu	37	chr11	8772183	8772183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacctgctcagagtccccCgaggggctttagtgccacca	10	17	1	1	rs149519927		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8772183	A	A	8772183	3	1	9	1	0	0	0	0	1	0	0	0	15338	652	23	1	3424	1	ST5	11	8772183	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20641	8772183	126234333	11691	19842											
C11orf17	56672	broad.mit.edu	37	chr11	8936549	8936549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctatattcaagagcccCtgctagactttgtgtcactg	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8936549	A	A	8936549	1	1	9	0	1	0	0	0	0	0	0	0	1643	696	24	2		2	C11orf17	11	8936549	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	164366	8936549	126069967	11692	19843											
C11orf16	56673	broad.mit.edu	37	chr11	8942868	8942868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggctcttagtctaacGggaattcttgttccactgac	9	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8942868	T	T	8942868	3	4	9	1	0	0	0	0	1	0	0	0	1642	1116	39	1	8	1	C11orf16	11	8942868	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6319	8942868	126063648	11693	19844											
C11orf16	56673	broad.mit.edu	37	chr11	8942936	8942936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttcagcttcccctggcGgggtccgcggtggcttcatg	15	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8942936	T	T	8942936	3	4	9	1	0	0	0	0	1	0	0	0	1642	1116	39	1	76	1	C11orf16	11	8942936	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68	8942936	126063580	11694	19845											
SCUBE2	57758	broad.mit.edu	37	chr11	9042666	9042666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatcttggaaacatctctcGggactcctgggctgtgtact	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9042666	T	T	9042666	2	4	9	1	0	0	0	0	0	0	0	1	14058	1124	39	1		1	SCUBE2	11	9042666	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99730	9042666	125963850	11695	19846											
SCUBE2	57758	broad.mit.edu	37	chr11	9055314	9055314	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagcgttctcgtgctcCatcataataggtcccagccc	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9055314	A	A	9055314	4	1	9	1	0	0	0	0	0	1	0	0	14058	603	21	2	1082	2	SCUBE2	11	9055314	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12648	9055314	125951202	11696	19847											
SCUBE2	57758	broad.mit.edu	37	chr11	9069646	9069646	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttactgagctgtgcttctCtgtatgaagaaacaaaatta	7	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9069646	A	A	9069646	5	1	9	1	0	0	0	0	0	0	1	0	14058	927	32	3	1483	3	SCUBE2	11	9069646	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	14332	9069646	125936870	11697	19848											
SCUBE2	57758	broad.mit.edu	37	chr11	9072178	9072178	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctggtcgcagaccctcGggaaacagctcagcattttt	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9072178	T	T	9072178	2	4	9	1	0	0	0	0	0	0	0	1	14058	1103	39	1		1	SCUBE2	11	9072178	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2532	9072178	125934338	11698	19849											
SCUBE2	57758	broad.mit.edu	37	chr11	9077452	9077452	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatccaaagagcactcatcCacatctgtaatggtcaaagg	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9077452	A	A	9077452	2	1	9	1	0	0	0	0	0	0	0	1	14058	581	21	2		2	SCUBE2	11	9077452	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5274	9077452	125929064	11699	19850											
SCUBE2	57758	broad.mit.edu	37	chr11	9077491	9077491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagaggggagctgaaaccCactctgagggatgagtgaag	18	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9077491	A	A	9077491	1	1	9	0	1	0	0	0	0	0	0	0	14058	609	21	2		2	SCUBE2	11	9077491	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	9077491	125929025	11700	19851											
SCUBE2	57758	broad.mit.edu	37	chr11	9080952	9080952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatcacaacctccattgcGggtctggcactcatcaatat	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9080952	T	T	9080952	3	4	9	1	0	0	0	0	1	0	0	0	14058	1116	39	1	2158	1	SCUBE2	11	9080952	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3461	9080952	125925564	11701	19852											
DENND5A	23258	broad.mit.edu	37	chr11	9165000	9165000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgccattgactgcctcccCgatggactcctggatctgcc	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9165000	A	A	9165000	3	1	9	1	0	0	0	0	1	0	0	0	4476	652	23	1	542	1	DENND5A	11	9165000	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84048	9165000	125841516	11702	19853											
DENND5A	23258	broad.mit.edu	37	chr11	9165021	9165021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggactcctggatctgccCagtgttcagctctaataaaa	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9165021	A	A	9165021	3	1	9	1	0	0	0	0	1	0	0	0	4476	594	21	2	563	2	DENND5A	11	9165021	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	9165021	125841495	11703	19854											
DENND5A	23258	broad.mit.edu	37	chr11	9191461	9191461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcttctgccgatctttcCgcctccactgggcaggggca	12	15	2	0	rs150663913	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9191461	A	A	9191461	3	1	9	1	0	0	0	0	1	0	0	0	4476	652	23	1	1826	1	DENND5A	11	9191461	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26440	9191461	125815055	11704	19855											
DENND5A	23258	broad.mit.edu	37	chr11	9200462	9200462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggattccttatcctggctGggttggatgacaaacacctc	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9200462	T	T	9200462	2	4	9	1	0	0	0	0	0	0	0	1	4476	1335	47	2		2	DENND5A	11	9200462	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9001	9200462	125806054	11705	19856											
IPO7	10527	broad.mit.edu	37	chr11	9442240	9442240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcatttgctgttggtgtcCagcaagtaagtctgttttta	11	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9442240	A	A	9442240	3	1	9	1	0	0	0	0	1	0	0	0	7867	595	21	2	931	2	IPO7	11	9442240	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	241778	9442240	125564276	11706	19857											
IPO7	10527	broad.mit.edu	37	chr11	9459748	9459748	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttatccttttatttaacGgattgaaaagagcatatgcc	6	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9459748	T	T	9459748	4	4	9	1	0	0	0	0	0	1	0	0	7867	1117	39	1	2697	1	IPO7	11	9459748	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17508	9459748	125546768	11707	19858											
SBF2	81846	broad.mit.edu	37	chr11	9810813	9810813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcatccagtcataggaaGggcctgtggacagggtctct	13	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9810813	T	T	9810813	3	4	9	1	0	0	0	0	1	0	0	0	13971	1000	35	2	798	2	SBF2	11	9810813	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	351065	9810813	125195703	11708	19859											
SBF2	81846	broad.mit.edu	37	chr11	9861095	9861095	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtaattctaaaatactcGggtcttgaacgggaagagct	11	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9861095	T	T	9861095	2	4	9	1	0	0	0	0	0	0	0	1	13971	1103	39	1		1	SBF2	11	9861095	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50282	9861095	125145421	11709	19860											
SBF2	81846	broad.mit.edu	37	chr11	9875219	9875219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctctgaatcttcaaaccCactctctgtatcatagctct	3	13	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9875219	A	A	9875219	3	1	9	1	0	0	0	0	1	0	0	0	13971	594	21	2	3229	2	SBF2	11	9875219	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14124	9875219	125131297	11710	19861											
SBF2	81846	broad.mit.edu	37	chr11	10051399	10051399	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggctgtccacatacacGgtatagatcaaacccaggca	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10051399	T	T	10051399	2	4	9	1	0	0	0	0	0	0	0	1	13971	1103	39	1		1	SBF2	11	10051399	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	176180	10051399	124955117	11711	19862											
AMPD3	272	broad.mit.edu	37	chr11	10483154	10483154	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtttgctaaagtgctcCgagaagaggacagcaaagat	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10483154	A	A	10483154	2	1	9	1	0	0	0	0	0	0	0	1	587	644	23	1		1	AMPD3	11	10483154	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	431755	10483154	124523362	11712	19863											
AMPD3	272	broad.mit.edu	37	chr11	10524252	10524252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacttgtcacatgagttcGgtggttcttttgcagagtcc	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10524252	T	T	10524252	1	4	9	0	1	0	0	0	0	0	0	0	587	1131	39	1		1	AMPD3	11	10524252	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41098	10524252	124482264	11713	19864											
RNF141	50862	broad.mit.edu	37	chr11	10536614	10536614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcctgtgtcgatcactcCtattagagaagtcaaaacaa	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10536614	A	A	10536614	1	1	9	0	1	0	0	0	0	0	0	0	13555	695	24	2		2	RNF141	11	10536614	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12362	10536614	124469902	11714	19865											
CTR9	9646	broad.mit.edu	37	chr11	10789287	10789287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagtaatcagctattgtGggaagatgattgatctctgt	10	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10789287	T	T	10789287	1	4	9	0	1	0	0	0	0	0	0	0	4058	1363	47	2		2	CTR9	11	10789287	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	252673	10789287	124217229	11715	19866											
CTR9	9646	broad.mit.edu	37	chr11	10789520	10789520	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaactttacatcagccCacccgagatcgagaaaaggt	7	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10789520	A	A	10789520	2	1	9	1	0	0	0	0	0	0	0	1	4058	581	21	2		2	CTR9	11	10789520	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	233	10789520	124216996	11716	19867											
GALNTL4	374378	broad.mit.edu	37	chr11	11314705	11314705	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtggggctcagaatgccCacatggatctgctgactgct	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11314705	A	A	11314705	2	1	9	1	0	0	0	0	0	0	0	1	6285	581	21	2		2	GALNTL4	11	11314705	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	525185	11314705	123691811	11717	19868											
GALNTL4	374378	broad.mit.edu	37	chr11	11362373	11362373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagatccctacctcctgcGgtatgttccatgccatgtag	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11362373	T	T	11362373	3	4	9	1	0	0	0	0	1	0	0	0	6285	1116	39	1	572	1	GALNTL4	11	11362373	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47668	11362373	123644143	11718	19869											
USP47	55031	broad.mit.edu	37	chr11	11924419	11924419	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagtgagggtactaattctCttgtaatgataagcgttcta	10	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11924419	A	A	11924419	1	1	9	0	1	0	0	0	0	0	0	0	17205	928	32	3		3	USP47	11	11924419	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	562046	11924419	123082097	11719	19870											
USP47	55031	broad.mit.edu	37	chr11	11924925	11924925	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaatcaaggggactgtttcCtaataaatcacttgttaccc	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11924925	G	G	11924925	1	3	9	0	1	0	0	0	0	0	0	0	17205	696	24	4		4	USP47	11	11924925	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	506	11924925	123081591	11720	19871											
USP47	55031	broad.mit.edu	37	chr11	11963881	11963881	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactctgacttactatgtaGgtgtttgttgaaagctccga	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11963881	T	T	11963881	5	4	9	1	0	0	0	0	0	0	1	0	17205	1014	35	2	2183	2	USP47	11	11963881	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	38956	11963881	123042635	11721	19872											
DKK3	27122	broad.mit.edu	37	chr11	11988467	11988467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggtggagcttgggacaGggtttttcctgcatctgagg	17	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11988467	T	T	11988467	1	4	9	0	1	0	0	0	0	0	0	0	4586	1015	35	2		2	DKK3	11	11988467	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24586	11988467	123018049	11722	19873											
MICAL2	9645	broad.mit.edu	37	chr11	12247766	12247766	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgtggagaacaaccagctCgcatttgatgtggccgagcg	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12247766	A	A	12247766	2	1	9	1	0	0	0	0	0	0	0	1	9663	871	31	3		3	MICAL2	11	12247766	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	259299	12247766	122758750	11723	19874											
MICALCL	84953	broad.mit.edu	37	chr11	12316176	12316176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctcacttttttcctccCtcagactcaaagacaaatct	3	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12316176	A	A	12316176	3	1	9	1	0	0	0	0	1	0	0	0	9665	681	24	2	1204	2	MICALCL	11	12316176	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68410	12316176	122690340	11724	19875											
MICALCL	84953	broad.mit.edu	37	chr11	12380034	12380034	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggacttgaggaggccCgtagtccctctccctggctg	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12380034	A	A	12380034	1	1	9	0	1	0	0	0	0	0	0	0	9665	667	23	1		1	MICALCL	11	12380034	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	63858	12380034	122626482	11725	19876											
TEAD1	7003	broad.mit.edu	37	chr11	12904649	12904649	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaattttcagcttttctcGagcagcagcgagacccagac	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12904649	T	T	12904649	4	4	9	1	0	0	0	0	0	1	0	0	15860	1059	37	3	702	3	TEAD1	11	12904649	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	524615	12904649	122101867	11726	19877											
TEAD1	7003	broad.mit.edu	37	chr11	12923659	12923659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcctcgtaaaattctGggtgagtaagacattgctgt	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12923659	T	T	12923659	3	4	9	1	0	0	0	0	1	0	0	0	15860	1362	47	2	902	2	TEAD1	11	12923659	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19010	12923659	122082857	11727	19878											
ARNTL	406	broad.mit.edu	37	chr11	13393880	13393880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttccacaaccagtgaacGgggaaatcagggtgaaatct	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13393880	T	T	13393880	3	4	9	1	0	0	0	0	1	0	0	0	971	1116	39	1	1037	1	ARNTL	11	13393880	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	470221	13393880	121612636	11728	19879											
ARNTL	406	broad.mit.edu	37	chr11	13402759	13402759	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagcccattgaacatcacGagtacgcctccccctgatgc	7	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13402759	T	T	13402759	2	4	9	1	0	0	0	0	0	0	0	1	971	1045	37	3		3	ARNTL	11	13402759	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8879	13402759	121603757	11729	19880											
BTBD10	84280	broad.mit.edu	37	chr11	13438768	13438768	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatactctcctttctcattGggtcgtgtaaagttatgttc	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13438768	T	T	13438768	2	4	9	1	0	0	0	0	0	0	0	1	1547	1335	47	2		2	BTBD10	11	13438768	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36009	13438768	121567748	11730	19881											
BTBD10	84280	broad.mit.edu	37	chr11	13441209	13441209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtttctgctgctgttccCagcactgctaatggaaccat	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13441209	A	A	13441209	3	1	9	1	0	0	0	0	1	0	0	0	1547	594	21	2	1069	2	BTBD10	11	13441209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2441	13441209	121565307	11731	19882											
BTBD10	84280	broad.mit.edu	37	chr11	13441232	13441232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgctaatggaaccatttGgggatgctttttgaggacgc	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13441232	T	T	13441232	3	4	9	1	0	0	0	0	1	0	0	0	1547	1348	47	2	1092	2	BTBD10	11	13441232	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	13441232	121565284	11732	19883											
COPB1	1315	broad.mit.edu	37	chr11	14490887	14490887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatatataccttaccttttGggataatttctcttcttcta	3	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14490887	T	T	14490887	3	4	9	1	0	0	0	0	1	0	0	0	3760	1357	47	2	933	2	COPB1	11	14490887	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1049655	14490887	120515629	11733	19884											
COPB1	1315	broad.mit.edu	37	chr11	14498482	14498482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctctccaagggacctgcGgatctcagtcatcacactct	7	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14498482	T	T	14498482	3	4	9	1	0	0	0	0	1	0	0	0	3760	1116	39	1	1467	1	COPB1	11	14498482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7595	14498482	120508034	11734	19885											
PDE3B	5140	broad.mit.edu	37	chr11	14889145	14889145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagaatcttttatcaccCacatagtgggtcccctgtgt	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14889145	A	A	14889145	3	1	9	1	0	0	0	0	1	0	0	0	11732	594	21	2	3038	2	PDE3B	11	14889145	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	390663	14889145	120117371	11735	19886											
PDE3B	5140	broad.mit.edu	37	chr11	14891019	14891019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcacagaaccaccaagaaGgaaaagcagacggcgaatat	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14891019	T	T	14891019	3	4	9	1	0	0	0	0	1	0	0	0	11732	1000	35	2	3214	2	PDE3B	11	14891019	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1874	14891019	120115497	11736	19887											
CALCA	796	broad.mit.edu	37	chr11	14991414	14991414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttctctcctacctctcGggatccaccttcctgtgtat	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14991414	T	T	14991414	1	4	9	0	1	0	0	0	0	0	0	0	2601	1131	39	1		1	CALCA	11	14991414	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	100395	14991414	120015102	11737	19888											
CALCA	796	broad.mit.edu	37	chr11	14991440	14991440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttcctgtgtatgctgcGgggagaggaggccctgtgct	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14991440	T	T	14991440	1	4	9	0	1	0	0	0	0	0	0	0	2601	1131	39	1		1	CALCA	11	14991440	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	14991440	120015076	11738	19889											
CALCA	796	broad.mit.edu	37	chr11	14991660	14991660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgcaggctgtgagccCctgcctgcccctccccagga	11	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14991660	A	A	14991660	1	1	9	0	1	0	0	0	0	0	0	0	2601	638	22	2		2	CALCA	11	14991660	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	220	14991660	120014856	11739	19890											
SOX6	55553	broad.mit.edu	37	chr11	16010577	16010577	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttggagttatgcatgtcGgggaaggcctgaaggatttt	15	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16010577	T	T	16010577	2	4	9	1	0	0	0	0	0	0	0	1	15069	1103	39	1		1	SOX6	11	16010577	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1018917	16010577	118995939	11740	19891											
SOX6	55553	broad.mit.edu	37	chr11	16068113	16068113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatggaggacagtttccCgtcaacaccatgtggctgtt	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16068113	A	A	16068113	3	1	9	1	0	0	0	0	1	0	0	0	15069	652	23	1	936	1	SOX6	11	16068113	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57536	16068113	118938403	11741	19892											
SOX6	55553	broad.mit.edu	37	chr11	16208346	16208346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacctgttcttgctgttggcGagcaaggtccatttgctgcc	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16208346	T	T	16208346	3	4	9	1	0	0	0	0	1	0	0	0	15069	1058	37	3	1885	3	SOX6	11	16208346	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	140233	16208346	118798170	11742	19893											
SOX6	55553	broad.mit.edu	37	chr11	16208432	16208432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgccagtagctgctccCgtaaactgatcagctgggta	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16208432	A	A	16208432	3	1	9	1	0	0	0	0	1	0	0	0	15069	652	23	1	1971	1	SOX6	11	16208432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	16208432	118798084	11743	19894											
SOX6	55553	broad.mit.edu	37	chr11	16340053	16340053	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtgtgtccaccacatcGgcaagactccctttgcggcg	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16340053	T	T	16340053	2	4	9	1	0	0	0	0	0	0	0	1	15069	1103	39	1		1	SOX6	11	16340053	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131621	16340053	118666463	11744	19895											
SOX6	55553	broad.mit.edu	37	chr11	16340117	16340117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcattatctcacggtccCgactcccttcgtcaggctta	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16340117	A	A	16340117	3	1	9	1	0	0	0	0	1	0	0	0	15069	652	23	1	2264	1	SOX6	11	16340117	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	16340117	118666399	11745	19896											
SOX6	55553	broad.mit.edu	37	chr11	16362660	16362660	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtttgttgtgcattatGgggtgcagaggcagatggga	18	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16362660	T	T	16362660	2	4	9	1	0	0	0	0	0	0	0	1	15069	1335	47	2		2	SOX6	11	16362660	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22543	16362660	118643856	11746	19897											
PLEKHA7	144100	broad.mit.edu	37	chr11	16838770	16838770	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtggcgaggagcccccCgaggggtgtcgggtgctctt	20	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16838770	A	A	16838770	2	1	9	1	0	0	0	0	0	0	0	1	12156	639	23	1		1	PLEKHA7	11	16838770	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	476110	16838770	118167746	11747	19898											
PLEKHA7	144100	broad.mit.edu	37	chr11	16877353	16877353	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggccaggagctcaccttGggtccaggcttggcctccag	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16877353	T	T	16877353	2	4	9	1	0	0	0	0	0	0	0	1	12156	1335	47	2		2	PLEKHA7	11	16877353	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38583	16877353	118129163	11748	19899											
PIK3C2A	5286	broad.mit.edu	37	chr11	17111372	17111372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcagggttactccaccCaagaaaaaattctcccgcag	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17111372	A	A	17111372	3	1	9	1	0	0	0	0	1	0	0	0	12004	593	21	2	90	2	PIK3C2A	11	17111372	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	234019	17111372	117895144	11749	19900											
PIK3C2A	5286	broad.mit.edu	37	chr11	17111427	17111427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacacttagttgaagttctCgctgtcttagggtttctttg	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17111427	A	A	17111427	3	1	9	1	0	0	0	0	1	0	0	0	12004	884	31	3	145	3	PIK3C2A	11	17111427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	17111427	117895089	11750	19901											
PIK3C2A	5286	broad.mit.edu	37	chr11	17121504	17121504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgtaagttctggtaaccCtgaaggaatcatctgtagaa	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17121504	A	A	17121504	3	1	9	1	0	0	0	0	1	0	0	0	12004	681	24	2	1071	2	PIK3C2A	11	17121504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10077	17121504	117885012	11751	19902											
PIK3C2A	5286	broad.mit.edu	37	chr11	17140166	17140166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattctaggaatggaaatacGgtaatcaataaaatttaaat	6	3	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17140166	T	T	17140166	1	4	9	0	1	0	0	0	0	0	0	0	12004	1131	39	1		1	PIK3C2A	11	17140166	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18662	17140166	117866350	11752	19903											
ABCC8	6833	broad.mit.edu	37	chr11	17432095	17432095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggtactgtagcttgtGggtcactaagaccactgtcc	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17432095	T	T	17432095	3	4	9	1	0	0	0	0	1	0	0	0	58	1348	47	2	2155	2	ABCC8	11	17432095	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	291929	17432095	117574421	11753	19904											
ABCC8	6833	broad.mit.edu	37	chr11	17436059	17436059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctccgacaggcttttacCgttgtttgttgaagggactc	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17436059	A	A	17436059	3	1	9	1	0	0	0	0	1	0	0	0	58	666	23	1	2439	1	ABCC8	11	17436059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3964	17436059	117570457	11754	19905											
ABCC8	6833	broad.mit.edu	37	chr11	17482160	17482160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggaccaggcgcctccCgaaggcatggctgagtgcct	15	13	0	2	rs148529020		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17482160	A	A	17482160	3	1	9	1	0	0	0	0	1	0	0	0	58	652	23	1	3995	1	ABCC8	11	17482160	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46101	17482160	117524356	11755	19906											
ABCC8	6833	broad.mit.edu	37	chr11	17483201	17483201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcgatgggcagcttccCgatggctcgcaagtcgatgg	15	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17483201	A	A	17483201	3	1	9	1	0	0	0	0	1	0	0	0	58	652	23	1	4134	1	ABCC8	11	17483201	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1041	17483201	117523315	11756	19907											
USH1C	10083	broad.mit.edu	37	chr11	17523520	17523520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagccttcctcatatttcCggaaatcctggaagcaaagg	8	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17523520	A	A	17523520	3	1	9	1	0	0	0	0	1	0	0	0	17160	652	23	1	535	1	USH1C	11	17523520	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40319	17523520	117482996	11757	19908											
USH1C	10083	broad.mit.edu	37	chr11	17542493	17542493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagctgttcctttgagccCcagtcttcttcccattgctt	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17542493	A	A	17542493	3	1	9	1	0	0	0	0	1	0	0	0	17160	624	22	2	1699	2	USH1C	11	17542493	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18973	17542493	117464023	11758	19909											
KCNC1	3746	broad.mit.edu	37	chr11	17793440	17793440	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatgcgtgtcatcttcTgccccaacaaggtagagttc	8	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17793440	G	G	17793440	3	3	9	1	0	0	0	0	1	0	0	0	8084	1580	55	5	805	5	KCNC1	11	17793440	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	250947	17793440	117213076	11759	19910											
SERGEF	26297	broad.mit.edu	37	chr11	17809643	17809643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctctatcacagtccccCatttctggaccagtcagatt	6	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17809643	A	A	17809643	3	1	9	1	0	0	0	0	1	0	0	0	14190	594	21	2	14	2	SERGEF	11	17809643	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16203	17809643	117196873	11760	19911											
SERGEF	26297	broad.mit.edu	37	chr11	17809670	17809670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccagtcagattggctttGggttgaagtttctgattgtc	13	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17809670	T	T	17809670	3	4	9	1	0	0	0	0	1	0	0	0	14190	1357	47	2	41	2	SERGEF	11	17809670	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	17809670	117196846	11761	19912											
TPH1	7166	broad.mit.edu	37	chr11	18042570	18042570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgctgaccttagcaaGggcatcactgacaacatcga	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18042570	T	T	18042570	3	4	9	1	0	0	0	0	1	0	0	0	16525	1000	35	2	35	2	TPH1	11	18042570	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	232900	18042570	116963946	11762	19913											
TPH1	7166	broad.mit.edu	37	chr11	18042656	18042656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcaggatctgaatactcCgtgtatatggattatacttc	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18042656	A	A	18042656	3	1	9	1	0	0	0	0	1	0	0	0	16525	652	23	1	121	1	TPH1	11	18042656	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	18042656	116963860	11763	19914											
TPH1	7166	broad.mit.edu	37	chr11	18050857	18050858	+	Missense_Mutation	DNP	CC	AA	AA													agctcttggaatacggttccCcaggtcttaatctcctcttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18050858	AA	AA	18050857	3	1	9	1	0	0	0	0	1	0	0	0	16525	624	22	2	836	2	TPH1	11	18050857	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	8201	18050857	116955659	11764	19915											
TPH1	7166	broad.mit.edu	37	chr11	18051105	18051105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatactttcgacgtttacGgtagacattgtctttgaagc	8	7	1	2	rs145479597	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18051105	T	T	18051105	3	4	9	1	0	0	0	0	1	0	0	0	16525	1116	39	1	938	1	TPH1	11	18051105	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	248	18051105	116955411	11765	19916											
SAA1	6288	broad.mit.edu	37	chr11	18288449	18288449	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccatgaagcttctcacGggcctggttttctgctcctt	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18288449	T	T	18288449	2	4	9	1	0	0	0	0	0	0	0	1	13909	1103	39	1		1	SAA1	11	18288449	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	237344	18288449	116718067	11766	19917											
HPS5	11234	broad.mit.edu	37	chr11	18318293	18318293	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taatcctggtaacaggagctCgtggaaaataatggcttcac	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18318293	A	A	18318293	1	1	9	0	1	0	0	0	0	0	0	0	7409	899	31	3		3	HPS5	11	18318293	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29844	18318293	116688223	11767	19918											
GTF2H1	2965	broad.mit.edu	37	chr11	18363111	18363111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattaggagtgaaaaaccCactactagatttaacagctt	6	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18363111	A	A	18363111	3	1	9	1	0	0	0	0	1	0	0	0	6925	594	21	2	816	2	GTF2H1	11	18363111	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44818	18363111	116643405	11768	19919											
LDHC	3948	broad.mit.edu	37	chr11	18456373	18456373	+	Missense_Mutation	SNP	C	A	A													gttgtaatctagactctgccCgtttccgttacctaattgga					rs148817816	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18456373	A	A	18456373	3	1	9	1	0	0	0	0	1	0	0	0	8774	652	23	1	519	1	LDHC	11	18456373	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93262	18456373	116550143	11769	19920	137	2									
LDHC	3948	broad.mit.edu	37	chr11	18456379	18456379	+	Missense_Mutation	SNP	C	A	A													atctagactctgcccgtttcCgttacctaattggagaaaag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18456379	A	A	18456379	3	1	9	1	0	0	0	0	1	0	0	0	8774	652	23	1	525	1	LDHC	11	18456379	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6	18456379	116550137	11770	19921	137	2									
LDHAL6A	160287	broad.mit.edu	37	chr11	18497816	18497816	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtggggctcagatatcGgaacattcctagttggaaat	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18497816	T	T	18497816	1	4	9	0	1	0	0	0	0	0	0	0	8771	1131	39	1		1	LDHAL6A	11	18497816	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41437	18497816	116508700	11771	19922											
LDHAL6A	160287	broad.mit.edu	37	chr11	18500293	18500293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatattccttagtgtccCatgtatcctgggagagaatg	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18500293	A	A	18500293	3	1	9	1	0	0	0	0	1	0	0	0	8771	594	21	2	901	2	LDHAL6A	11	18500293	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2477	18500293	116506223	11772	19923											
LDHAL6A	160287	broad.mit.edu	37	chr11	18500389	18500389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagtgcagaaacactttGggaaattcagaaggagctca	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18500389	T	T	18500389	3	4	9	1	0	0	0	0	1	0	0	0	8771	1357	47	2	997	2	LDHAL6A	11	18500389	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96	18500389	116506127	11773	19924											
TSG101	7251	broad.mit.edu	37	chr11	18505434	18505434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactacttcttgatctaaacGggtaaccatctcttccagtt	5	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18505434	T	T	18505434	3	4	9	1	0	0	0	0	1	0	0	0	16741	1116	39	1	358	1	TSG101	11	18505434	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5045	18505434	116501082	11774	19925											
TSG101	7251	broad.mit.edu	37	chr11	18505538	18505538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccatttcctccttcatcCgccatctcagtttgtcactg	5	15	3	0	rs149716557		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18505538	A	A	18505538	3	1	9	1	0	0	0	0	1	0	0	0	16741	652	23	1	462	1	TSG101	11	18505538	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	18505538	116500978	11775	19926											
TSG101	7251	broad.mit.edu	37	chr11	18505561	18505561	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcagtttgtcactgacCgcagagatgagagaggctcg	12	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18505561	A	A	18505561	2	1	9	1	0	0	0	0	0	0	0	1	16741	639	23	1		1	TSG101	11	18505561	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	18505561	116500955	11776	19927											
TSG101	7251	broad.mit.edu	37	chr11	18505610	18505610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgctgattgtgccatccCtactgggacctgcaggaaac	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18505610	A	A	18505610	3	1	9	1	0	0	0	0	1	0	0	0	16741	681	24	2	534	2	TSG101	11	18505610	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	18505610	116500906	11777	19928											
SPTY2D1	144108	broad.mit.edu	37	chr11	18637062	18637062	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaggggcattcctttGgaagaaggatgcctgtctcc	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18637062	T	T	18637062	2	4	9	1	0	0	0	0	0	0	0	1	15244	1335	47	2		2	SPTY2D1	11	18637062	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131452	18637062	116369454	11778	19929											
SPTY2D1	144108	broad.mit.edu	37	chr11	18637137	18637137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgagagggtgcctttttGgacacagttggaggtagttt	14	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18637137	T	T	18637137	2	4	9	1	0	0	0	0	0	0	0	1	15244	1335	47	2		2	SPTY2D1	11	18637137	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	75	18637137	116369379	11779	19930											
SPTY2D1	144108	broad.mit.edu	37	chr11	18637460	18637460	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttccatttcatactctcGgtcggttccttggctggtat	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18637460	T	T	18637460	2	4	9	1	0	0	0	0	0	0	0	1	15244	1124	39	1		1	SPTY2D1	11	18637460	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	323	18637460	116369056	11780	19931											
SPTY2D1	144108	broad.mit.edu	37	chr11	18655769	18655769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgttgacaccttgtccCttggaagctatcatgagaat	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18655769	A	A	18655769	3	1	9	1	0	0	0	0	1	0	0	0	15244	680	24	2	2045	2	SPTY2D1	11	18655769	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18309	18655769	116350747	11781	19932											
IGSF22	283284	broad.mit.edu	37	chr11	18736085	18736085	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacacaccctccaccttctCgtcattcagcactacacaca	2	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18736085	A	A	18736085	4	1	9	1	0	0	0	0	0	1	0	0	7670	893	31	3	2410	3	IGSF22	11	18736085	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80316	18736085	116270431	11782	19933											
IGSF22	283284	broad.mit.edu	37	chr11	18738387	18738387	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcgtcagaccatcttcGgacaccgtgatttcatactt	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18738387	T	T	18738387	2	4	9	1	0	0	0	0	0	0	0	1	7670	1103	39	1		1	IGSF22	11	18738387	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2302	18738387	116268129	11783	19934											
IGSF22	283284	broad.mit.edu	37	chr11	18741312	18741312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcttcctgagcagccccCgaaagtcggtgaaaccatac	10	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18741312	A	A	18741312	3	1	9	1	0	0	0	0	1	0	0	0	7670	652	23	1	3401	1	IGSF22	11	18741312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2925	18741312	116265204	11784	19935											
IGSF22	283284	broad.mit.edu	37	chr11	18741362	18741362	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctcaaagtctttcttGggcactttggacaaaatctc	6	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18741362	T	T	18741362	2	4	9	1	0	0	0	0	0	0	0	1	7670	1335	47	2		2	IGSF22	11	18741362	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	18741362	116265154	11785	19936											
MRGPRX1	259249	broad.mit.edu	37	chr11	18956409	18956409	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgatctctgattctcccCaccaccctgccatgtgggat	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18956409	A	A	18956409	1	1	9	0	1	0	0	0	0	0	0	0	9860	609	21	2		2	MRGPRX1	11	18956409	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	215047	18956409	116050107	11786	19937											
MRGPRX2	117194	broad.mit.edu	37	chr11	19077778	19077778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcgttcctgcgcatgcGgaagcccaggagccagagca	15	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19077778	T	T	19077778	3	4	9	1	0	0	0	0	1	0	0	0	9861	1116	39	1	824	1	MRGPRX2	11	19077778	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121369	19077778	115928738	11787	19938											
NAV2	89797	broad.mit.edu	37	chr11	19854043	19854043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacagatctacacagactGggccaatcattacctagcca	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19854043	T	T	19854043	3	4	9	1	0	0	0	0	1	0	0	0	10278	1357	47	2	366	2	NAV2	11	19854043	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	776265	19854043	115152473	11788	19939											
NAV2	89797	broad.mit.edu	37	chr11	19954753	19954753	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcagcctcctcccacccCggaatgagtgacaatgcacc	8	16	1	2	rs148765914		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19954753	A	A	19954753	2	1	9	1	0	0	0	0	0	0	0	1	10278	639	23	1		1	NAV2	11	19954753	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	100710	19954753	115051763	11789	19940											
NAV2	89797	broad.mit.edu	37	chr11	19970481	19970481	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaggcagctggcctccCggggcagtagtgtctgccat	15	11	1	1	rs144875196	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19970481	A	A	19970481	2	1	9	1	0	0	0	0	0	0	0	1	10278	643	23	1		1	NAV2	11	19970481	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15728	19970481	115036035	11790	19941											
NAV2	89797	broad.mit.edu	37	chr11	20005705	20005705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggacttggcctctataccCgtcgcctgaaccggctccct	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20005705	A	A	20005705	3	1	9	1	0	0	0	0	1	0	0	0	10278	652	23	1	2801	1	NAV2	11	20005705	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35224	20005705	115000811	11791	19942											
NAV2	89797	broad.mit.edu	37	chr11	20113786	20113786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaagctgagaatgatcGgctgaagtcagagtctcaag	13	7	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20113786	T	T	20113786	3	4	9	1	0	0	0	0	1	0	0	0	10278	1116	39	1	5915	1	NAV2	11	20113786	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108081	20113786	114892730	11792	19943											
NAV2	89797	broad.mit.edu	37	chr11	20117148	20117148	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcggagttctaaggcaacctGagtcctctgctgaactgagt	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20117148	T	T	20117148	1	4	9	0	1	0	0	0	0	0	0	0	10278	1305	45	3		3	NAV2	11	20117148	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3362	20117148	114889368	11793	19944											
PRMT3	10196	broad.mit.edu	37	chr11	20413771	20413771	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaggacttgaattttatGgatacattaagctaataaat	6	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20413771	T	T	20413771	4	4	9	1	0	0	0	0	0	1	0	0	12644	1349	47	2	276	2	PRMT3	11	20413771	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	296623	20413771	114592745	11794	19945											
SLC6A5	9152	broad.mit.edu	37	chr11	20636286	20636286	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcgactttctgcatgacCgcttatcccaacgtgacaat	6	13	1	2	rs149532917		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20636286	A	A	20636286	2	1	9	1	0	0	0	0	0	0	0	1	14801	639	23	1		1	SLC6A5	11	20636286	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	222515	20636286	114370230	11795	19946											
SLC6A5	9152	broad.mit.edu	37	chr11	20639323	20639323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgctgaagatttctgcaGggattgaatatcctggcgag	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20639323	T	T	20639323	3	4	9	1	0	0	0	0	1	0	0	0	14801	1000	35	2	1179	2	SLC6A5	11	20639323	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3037	20639323	114367193	11796	19947											
SLC6A5	9152	broad.mit.edu	37	chr11	20658640	20658640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatacaactttcctggatGggacatacaaagggcttggg	11	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20658640	T	T	20658640	1	4	9	0	1	0	0	0	0	0	0	0	14801	1363	47	2		2	SLC6A5	11	20658640	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19317	20658640	114347876	11797	19948											
SLC6A5	9152	broad.mit.edu	37	chr11	20660031	20660031	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacatgtttcagcttgtGgacacctatgctgcctccta	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20660031	T	T	20660031	2	4	9	1	0	0	0	0	0	0	0	1	14801	1335	47	2		2	SLC6A5	11	20660031	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1391	20660031	114346485	11798	19949											
ANO5	203859	broad.mit.edu	37	chr11	22261114	22261114	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcttgaatatctgcaGggccaatattggaagccatc	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22261114	T	T	22261114	5	4	9	1	0	0	0	0	0	0	1	0	700	1014	35	2	796	2	ANO5	11	22261114	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	1601083	22261114	112745402	11799	19950											
ANO5	203859	broad.mit.edu	37	chr11	22277019	22277019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagcttcagctgagacCagaatttgaagctatgtgta	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22277019	A	A	22277019	3	1	9	1	0	0	0	0	1	0	0	0	700	594	21	2	1333	2	ANO5	11	22277019	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15905	22277019	112729497	11800	19951											
ANO5	203859	broad.mit.edu	37	chr11	22284549	22284549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaccattataatgaccGggaaacagatttttggaaac	8	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22284549	T	T	22284549	3	4	9	1	0	0	0	0	1	0	0	0	700	1116	39	1	1924	1	ANO5	11	22284549	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7530	22284549	112721967	11801	19952											
SLC17A6	57084	broad.mit.edu	37	chr11	22383761	22383761	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaaacgtgataacttaCcttgatgacatcttctggcc	9	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22383761	G	G	22383761	1	3	9	0	1	0	0	0	0	0	0	0	14534	522	18	4		4	SLC17A6	11	22383761	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	99212	22383761	112622755	11802	19953											
FANCF	2188	broad.mit.edu	37	chr11	22646886	22646886	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcatcagagagtcctcctgGagatttgggttctctctata	9	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22646886	T	T	22646886	2	4	9	1	0	0	0	0	0	0	0	1	5724	1161	41	3		3	FANCF	11	22646886	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	263125	22646886	112359630	11803	19954											
MUC15	143662	broad.mit.edu	37	chr11	26586808	26586808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgataaggggtaaaccCagtgaagctatcactgtttg	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26586808	A	A	26586808	3	1	9	1	0	0	0	0	1	0	0	0	10066	594	21	2	418	2	MUC15	11	26586808	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3939922	26586808	108419708	11804	19955											
ANO3	63982	broad.mit.edu	37	chr11	26620392	26620392	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatatttagataactttcGtttctctcataggaaacact	5	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26620392	A	A	26620392	1	1	9	0	1	0	0	0	0	0	0	0	698	1160	40	4		4	ANO3	11	26620392	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	33584	26620392	108386124	11805	19956											
ANO3	63982	broad.mit.edu	37	chr11	26645926	26645926	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccactgtataacatacattaTagatgtttcttcaaatagtg	5	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26645926	A	A	26645926	1	1	9	0	1	0	0	0	0	0	0	0	698	1421	49	5		5	ANO3	11	26645926	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	25534	26645926	108360590	11806	19957											
ANO3	63982	broad.mit.edu	37	chr11	26660788	26660788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatggaactaggataccCgtgagcacattattttcaaa	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26660788	A	A	26660788	3	1	9	1	0	0	0	0	1	0	0	0	698	666	23	1	2223	1	ANO3	11	26660788	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14862	26660788	108345728	11807	19958											
ANO3	63982	broad.mit.edu	37	chr11	26664714	26664714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatatagtaatttcctaatGctcttcttttgcagttttgc	5	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26664714	T	T	26664714	1	4	9	0	1	0	0	0	0	0	0	0	698	1334	46	3		3	ANO3	11	26664714	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3926	26664714	108341802	11808	19959											
SLC5A12	159963	broad.mit.edu	37	chr11	26725494	26725494	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccactgcttttaatcctcCctgaaatagagagaatgttt	6	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26725494	A	A	26725494	4	1	9	1	0	0	0	0	0	1	0	0	14778	637	22	2	1374	2	SLC5A12	11	26725494	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60780	26725494	108281022	11809	19960											
SLC5A12	159963	broad.mit.edu	37	chr11	26734188	26734188	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagccatgaccacttacCgtctgtacaatgtagatgac	8	12	1	3	rs140957763	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26734188	A	A	26734188	2	1	9	1	0	0	0	0	0	0	0	1	14778	666	23	1		1	SLC5A12	11	26734188	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8694	26734188	108272328	11810	19961											
LGR4	55366	broad.mit.edu	37	chr11	27402457	27402457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacatagttcttaagagtGgattaccatcaaatgctcca	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27402457	T	T	27402457	3	4	9	1	0	0	0	0	1	0	0	0	8828	1348	47	2	2084	2	LGR4	11	27402457	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	668269	27402457	107604059	11811	19962											
LGR4	55366	broad.mit.edu	37	chr11	27403754	27403754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctctttaaggctaggaaGggctttaatagcctgaggaa	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27403754	T	T	27403754	3	4	9	1	0	0	0	0	1	0	0	0	8828	1000	35	2	2164	2	LGR4	11	27403754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1297	27403754	107602762	11812	19963											
BDNF	627	broad.mit.edu	37	chr11	27679991	27679991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcacgctctccagagtccCatgggtccgcacacctgggt	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27679991	A	A	27679991	3	1	9	1	0	0	0	0	1	0	0	0	1399	594	21	2	626	2	BDNF	11	27679991	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	276237	27679991	107326525	11813	19964											
KIF18A	81930	broad.mit.edu	37	chr11	28080558	28080558	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttttgctttggttgttcGgcagtttggtcagcccaaac	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28080558	T	T	28080558	2	4	9	1	0	0	0	0	0	0	0	1	8350	1103	39	1		1	KIF18A	11	28080558	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	400567	28080558	106925958	11814	19965											
METT5D1	196074	broad.mit.edu	37	chr11	28232635	28232635	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagatatgacatttggttcGggagggcacacaaaagccat	11	8	0	2	rs145788001	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28232635	T	T	28232635	2	4	9	1	0	0	0	0	0	0	0	1	9585	1103	39	1		1	METT5D1	11	28232635	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152077	28232635	106773881	11815	19966											
METT5D1	196074	broad.mit.edu	37	chr11	28318379	28318379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctatcctaagaacatacGgggaggagaagcatgccaag	11	9	1	2	rs145080229		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28318379	T	T	28318379	3	4	9	1	0	0	0	0	1	0	0	0	9585	1116	39	1	693	1	METT5D1	11	28318379	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85744	28318379	106688137	11816	19967											
KCNA4	3739	broad.mit.edu	37	chr11	30033266	30033266	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggcaaaagatgacaatGgagattaagatgaccaggac	11	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30033266	T	T	30033266	2	4	9	1	0	0	0	0	0	0	0	1	8075	1335	47	2		2	KCNA4	11	30033266	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1714887	30033266	104973250	11817	19968											
C11orf46	120534	broad.mit.edu	37	chr11	30352565	30352565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccataaaacctactatactCgtcacacaggttttaagact	5	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30352565	A	A	30352565	3	1	9	1	0	0	0	0	1	0	0	0	1655	884	31	3	72	3	C11orf46	11	30352565	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	319299	30352565	104653951	11818	19969											
C11orf46	120534	broad.mit.edu	37	chr11	30352895	30352895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgttgatactgaagacCgccagaaaaggaaacctgag	12	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30352895	A	A	30352895	3	1	9	1	0	0	0	0	1	0	0	0	1655	652	23	1	402	1	C11orf46	11	30352895	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	330	30352895	104653621	11819	19970											
C11orf46	120534	broad.mit.edu	37	chr11	30358172	30358172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtctcctgatttttagtGggatggacctctgtgactgc	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30358172	T	T	30358172	3	4	9	1	0	0	0	0	1	0	0	0	1655	1348	47	2	623	2	C11orf46	11	30358172	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5277	30358172	104648344	11820	19971											
C11orf46	120534	broad.mit.edu	37	chr11	30358265	30358265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtgtggagctgaatgcCgctgtgaccgcaagtggctg	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30358265	A	A	30358265	3	1	9	1	0	0	0	0	1	0	0	0	1655	652	23	1	716	1	C11orf46	11	30358265	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	30358265	104648251	11821	19972											
DCDC1	341019	broad.mit.edu	37	chr11	31327199	31327199	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttaaaaagggctctccCgttgaaacataaacatcggc	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31327199	A	A	31327199	2	1	9	1	0	0	0	0	0	0	0	1	4317	639	23	1		1	DCDC1	11	31327199	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	968934	31327199	103679317	11822	19973											
IMMP1L	196294	broad.mit.edu	37	chr11	31477835	31477835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttttaaagaaatctgatGgactagtggtgaggattttg	13	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31477835	T	T	31477835	3	4	9	1	0	0	0	0	1	0	0	0	7786	1348	47	2	219	2	IMMP1L	11	31477835	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150636	31477835	103528681	11823	19974											
WT1	7490	broad.mit.edu	37	chr11	32413566	32413566	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttcaggtggtcggaccGggagaactttcgctgacaag	15	9	2	2	rs121907900		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32413566	T	T	32413566	2	4	9	1	0	0	0	0	0	0	0	1	17535	1115	39	1		1	WT1	11	32413566	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	935731	32413566	102592950	11824	19975											
CCDC73	493860	broad.mit.edu	37	chr11	32724389	32724389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgcaatatttaaaatGgtagtgtttgtctatcctta	8	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32724389	T	T	32724389	1	4	9	0	1	0	0	0	0	0	0	0	2874	1363	47	2		2	CCDC73	11	32724389	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	310823	32724389	102282127	11825	19976											
CCDC73	493860	broad.mit.edu	37	chr11	32781646	32781646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacaaaagcattttaaaaaGgagcttacccttctcatacg	5	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32781646	T	T	32781646	1	4	9	0	1	0	0	0	0	0	0	0	2874	1015	35	2		2	CCDC73	11	32781646	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57257	32781646	102224870	11826	19977											
QSER1	79832	broad.mit.edu	37	chr11	32956816	32956816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttagtgtctgaaactggcGgtaacagtccatcagataaa	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32956816	T	T	32956816	3	4	9	1	0	0	0	0	1	0	0	0	12990	1116	39	1	3631	1	QSER1	11	32956816	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	175170	32956816	102049700	11827	19978											
QSER1	79832	broad.mit.edu	37	chr11	32975563	32975563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagaatcctcaaagccCattgaacttgatggtcttcc	6	12	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32975563	A	A	32975563	2	1	9	1	0	0	0	0	0	0	0	1	12990	581	21	2		2	QSER1	11	32975563	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18747	32975563	102030953	11828	19979											
DEPDC7	91614	broad.mit.edu	37	chr11	33047303	33047303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgaaaaaacgaaggcacCgtttaaaacgacataatgac	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33047303	A	A	33047303	3	1	9	1	0	0	0	0	1	0	0	0	4484	652	23	1	228	1	DEPDC7	11	33047303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71740	33047303	101959213	11829	19980											
DEPDC7	91614	broad.mit.edu	37	chr11	33054489	33054489	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttatggccatacagaacGgaagagatccaaatagagat	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33054489	T	T	33054489	4	4	9	1	0	0	0	0	0	1	0	0	4484	1117	39	1	1398	1	DEPDC7	11	33054489	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7186	33054489	101952027	11830	19981											
TCP11L1	55346	broad.mit.edu	37	chr11	33078702	33078702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgtacataaagcgttttGggattgcttgagtgtgcagc	13	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33078702	T	T	33078702	3	4	9	1	0	0	0	0	1	0	0	0	15836	1357	47	2	348	2	TCP11L1	11	33078702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24213	33078702	101927814	11831	19982											
CSTF3	1479	broad.mit.edu	37	chr11	33124690	33124690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatataatctctactcCgatcttcaatcattttttta	1	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33124690	A	A	33124690	3	1	9	1	0	0	0	0	1	0	0	0	4020	652	23	1	1579	1	CSTF3	11	33124690	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45988	33124690	101881826	11832	19983											
C11orf41	25758	broad.mit.edu	37	chr11	33564571	33564571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcaagccatcctttctGgggcggttcccgcatcacca	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33564571	T	T	33564571	3	4	9	1	0	0	0	0	1	0	0	0	1652	1348	47	2	573	2	C11orf41	11	33564571	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	439881	33564571	101441945	11833	19984											
NAT10	55226	broad.mit.edu	37	chr11	34153785	34153785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtaactgcagctagccCttgtgtgaatggtagcaggg	14	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34153785	A	A	34153785	1	1	9	0	1	0	0	0	0	0	0	0	10268	696	24	2		2	NAT10	11	34153785	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	589214	34153785	100852731	11834	19985											
NAT10	55226	broad.mit.edu	37	chr11	34156162	34156162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcaggctcccctgaagcCgtgttgctggcggtgcttta	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34156162	A	A	34156162	1	1	9	0	1	0	0	0	0	0	0	0	10268	667	23	1		1	NAT10	11	34156162	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2377	34156162	100850354	11835	19986											
NAT10	55226	broad.mit.edu	37	chr11	34160887	34160887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtgattgggggctgccGgggatgcctccagacctcta	16	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34160887	T	T	34160887	1	4	9	0	1	0	0	0	0	0	0	0	10268	1131	39	1		1	NAT10	11	34160887	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4725	34160887	100845629	11836	19987											
ABTB2	25841	broad.mit.edu	37	chr11	34176292	34176292	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatggattctgttcctcCgtagtacagatactgcatca	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34176292	A	A	34176292	4	1	9	1	0	0	0	0	0	1	0	0	103	661	23	1	367	1	ABTB2	11	34176292	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15405	34176292	100830224	11837	19988											
CAT	847	broad.mit.edu	37	chr11	34472638	34472638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcgcagttcggttctcCactgttggtaagttggttta	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34472638	A	A	34472638	2	1	9	1	0	0	0	0	0	0	0	1	2712	581	21	2		2	CAT	11	34472638	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	296346	34472638	100533878	11838	19989											
CAT	847	broad.mit.edu	37	chr11	34482666	34482666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttcactcttaagtagcGggaaaggcagaattttgtgg	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34482666	T	T	34482666	1	4	9	0	1	0	0	0	0	0	0	0	2712	1131	39	1		1	CAT	11	34482666	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10028	34482666	100523850	11839	19990											
ELF5	2001	broad.mit.edu	37	chr11	34511531	34511531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaccttgacagagccttGggtggcttgcgcttggttac	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34511531	T	T	34511531	1	4	9	0	1	0	0	0	0	0	0	0	5099	1363	47	2		2	ELF5	11	34511531	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28865	34511531	100494985	11840	19991											
CD44	960	broad.mit.edu	37	chr11	35208419	35208419	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcagtcacagacctgccCaatgcctttgatggaccaat	7	13	2	2	rs56286708		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35208419	A	A	35208419	2	1	9	1	0	0	0	0	0	0	0	1	3047	581	21	2		2	CD44	11	35208419	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	696888	35208419	99798097	11841	19992											
CD44	960	broad.mit.edu	37	chr11	35222644	35222644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtttcaaccacaccacGggcttttgaccacacaaaac	5	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35222644	T	T	35222644	3	4	9	1	0	0	0	0	1	0	0	0	3047	1116	39	1	968	1	CD44	11	35222644	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14225	35222644	99783872	11842	19993											
SLC1A2	6506	broad.mit.edu	37	chr11	35313850	35313850	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacctggaagcggtgcccaGggcagtgatccaagcttgga	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35313850	C	C	35313850	3	2	9	1	0	0	0	0	1	0	0	0	14545	991	35	4	669	4	SLC1A2	11	35313850	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91206	35313850	99692666	11843	19994											
PAMR1	25891	broad.mit.edu	37	chr11	35515766	35515766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatattcacagcactccCgacacatgatattccactct	4	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35515766	A	A	35515766	3	1	9	1	0	0	0	0	1	0	0	0	11507	652	23	1	2129	1	PAMR1	11	35515766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	201916	35515766	99490750	11844	19995											
TRAF6	7189	broad.mit.edu	37	chr11	36511453	36511453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctacccatgtcaaagcGggtggagacctcacagcgca	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36511453	T	T	36511453	3	4	9	1	0	0	0	0	1	0	0	0	16569	1116	39	1	68	1	TRAF6	11	36511453	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	995687	36511453	98495063	11845	19996											
TRAF6	7189	broad.mit.edu	37	chr11	36512026	36512026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcagctcccggatttgatGgtcttgtcttacaaggcgac	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36512026	T	T	36512026	3	4	9	1	0	0	0	0	1	0	0	0	16569	1348	47	2	641	2	TRAF6	11	36512026	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	573	36512026	98494490	11846	19997											
TRAF6	7189	broad.mit.edu	37	chr11	36522877	36522877	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcatacttgctttccagGggtgggtcaaactctacatc	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36522877	T	T	36522877	2	4	9	1	0	0	0	0	0	0	0	1	16569	1219	43	2		2	TRAF6	11	36522877	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10851	36522877	98483639	11847	19998											
RAG1	5896	broad.mit.edu	37	chr11	36597288	36597288	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagttctacaagatcttcCagctagagataggggaagtg	12	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36597288	G	G	36597288	3	3	9	1	0	0	0	0	1	0	0	0	13111	595	21	4	2436	4	RAG1	11	36597288	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74411	36597288	98409228	11848	19999											
RAG2	5897	broad.mit.edu	37	chr11	36614724	36614724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttgtttattgtctcctGgtatgccaagaaaaacagtt	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36614724	T	T	36614724	3	4	9	1	0	0	0	0	1	0	0	0	13113	1348	47	2	592	2	RAG2	11	36614724	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17436	36614724	98391792	11849	20000											
RAG2	5897	broad.mit.edu	37	chr11	36614805	36614805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgtctggggtccaatctGgggtctccatctcacgaatt	10	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36614805	T	T	36614805	3	4	9	1	0	0	0	0	1	0	0	0	13113	1348	47	2	673	2	RAG2	11	36614805	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81	36614805	98391711	11850	20001											
API5	8539	broad.mit.edu	37	chr11	43345211	43345211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctttatttttacacaccCggtattagctatatatatat	4	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43345211	A	A	43345211	1	1	9	0	1	0	0	0	0	0	0	0	775	667	23	1		1	API5	11	43345211	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6730406	43345211	91661305	11851	20002											
API5	8539	broad.mit.edu	37	chr11	43351652	43351652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaactgctagttccatacCaaactatatagacttgtgtt	5	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43351652	A	A	43351652	1	1	9	0	1	0	0	0	0	0	0	0	775	609	21	2		2	API5	11	43351652	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6441	43351652	91654864	11852	20003											
TTC17	55761	broad.mit.edu	37	chr11	43411312	43411312	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcaaagccaaggtgccCttaggggacctggatctata	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43411312	A	A	43411312	2	1	9	1	0	0	0	0	0	0	0	1	16810	668	24	2		2	TTC17	11	43411312	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59660	43411312	91595204	11853	20004											
TTC17	55761	broad.mit.edu	37	chr11	43427125	43427125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaagctaccctagagtccCtgttggtggggaattgccaa	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43427125	A	A	43427125	3	1	9	1	0	0	0	0	1	0	0	0	16810	681	24	2	1587	2	TTC17	11	43427125	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15813	43427125	91579391	11854	20005											
TTC17	55761	broad.mit.edu	37	chr11	43515377	43515377	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacattgaagcttcagcccGagtttgtcccagccaagaac	8	14	1	2	rs28709458		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43515377	T	T	43515377	4	4	9	1	0	0	0	0	0	1	0	0	16810	1059	37	3	3443	3	TTC17	11	43515377	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	88252	43515377	91491139	11855	20006											
HSD17B12	51144	broad.mit.edu	37	chr11	43740346	43740346	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacaaaaaaaagaagaccCgcacgtcacccgccttctgg	8	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43740346	A	A	43740346	1	1	9	0	1	0	0	0	0	0	0	0	7448	667	23	1		1	HSD17B12	11	43740346	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	224969	43740346	91266170	11856	20007											
ALKBH3	221120	broad.mit.edu	37	chr11	43919933	43919933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacattcttgctacctgggcCgttccacaggtccttcagaa	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43919933	A	A	43919933	1	1	9	0	1	0	0	0	0	0	0	0	528	667	23	1		1	ALKBH3	11	43919933	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	179587	43919933	91086583	11857	20008											
ALKBH3	221120	broad.mit.edu	37	chr11	43919963	43919963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccttcagaattactacacGggaggctggcatcatcacga	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43919963	T	T	43919963	1	4	9	0	1	0	0	0	0	0	0	0	528	1131	39	1		1	ALKBH3	11	43919963	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	43919963	91086553	11858	20009											
ACCSL	390110	broad.mit.edu	37	chr11	44074180	44074180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgattgggagactttGgactgatagctctgtctctc	12	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44074180	T	T	44074180	1	4	9	0	1	0	0	0	0	0	0	0	134	1363	47	2		2	ACCSL	11	44074180	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	154217	44074180	90932336	11859	20010											
ACCSL	390110	broad.mit.edu	37	chr11	44074262	44074262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctttgcctttagctccCgcctgtatgcaaaggttgag	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44074262	A	A	44074262	3	1	9	1	0	0	0	0	1	0	0	0	134	652	23	1	845	1	ACCSL	11	44074262	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	44074262	90932254	11860	20011											
ACCSL	390110	broad.mit.edu	37	chr11	44081397	44081397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccctctagctatgcgtcGgttctgtgatgtgctgcagg	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44081397	T	T	44081397	3	4	9	1	0	0	0	0	1	0	0	0	134	1116	39	1	1688	1	ACCSL	11	44081397	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7135	44081397	90925119	11861	20012											
EXT2	2132	broad.mit.edu	37	chr11	44148404	44148404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttcgtggagctcggctGggccaggcagtattgagcga	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44148404	T	T	44148404	2	4	9	1	0	0	0	0	0	0	0	1	5367	1335	47	2		2	EXT2	11	44148404	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	67007	44148404	90858112	11862	20013											
EXT2	2132	broad.mit.edu	37	chr11	44193174	44193174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttataggcccggtggttctGggaagcgtacttccagtcaa	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44193174	T	T	44193174	3	4	9	1	0	0	0	0	1	0	0	0	5367	1357	47	2	1413	2	EXT2	11	44193174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44770	44193174	90813342	11863	20014											
EXT2	2132	broad.mit.edu	37	chr11	44193237	44193237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagattatcaatgaccGgatctatccatatgctgcca	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44193237	T	T	44193237	3	4	9	1	0	0	0	0	1	0	0	0	5367	1116	39	1	1476	1	EXT2	11	44193237	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	44193237	90813279	11864	20015											
TSPAN18	90139	broad.mit.edu	37	chr11	44941380	44941380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctagtttggttgctgcGgggtcaacgggcctgaagac	14	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44941380	T	T	44941380	3	4	9	1	0	0	0	0	1	0	0	0	16767	1116	39	1	463	1	TSPAN18	11	44941380	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	748143	44941380	90065136	11865	20016											
TP53I11	9537	broad.mit.edu	37	chr11	44956543	44956543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccagggacatgaggccCgtctcagctagcgtggcagt	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44956543	A	A	44956543	2	1	9	1	0	0	0	0	0	0	0	1	16509	639	23	1		1	TP53I11	11	44956543	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15163	44956543	90049973	11866	20017											
PRDM11	56981	broad.mit.edu	37	chr11	45245908	45245908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagggggatgtacaccccCaagctaagaagaagaaaatt	11	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45245908	A	A	45245908	3	1	9	1	0	0	0	0	1	0	0	0	12558	595	21	2	1011	2	PRDM11	11	45245908	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	289365	45245908	89760608	11867	20018											
CHST1	8534	broad.mit.edu	37	chr11	45672133	45672133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggcgcctagcatgaccCgccggtcggccgggctcttg	16	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45672133	A	A	45672133	3	1	9	1	0	0	0	0	1	0	0	0	3428	652	23	1	898	1	CHST1	11	45672133	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	426225	45672133	89334383	11868	20019											
CRY2	1408	broad.mit.edu	37	chr11	45877588	45877588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaaggaaactgaactccCgcctgtttgtagtccgggga	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45877588	A	A	45877588	3	1	9	1	0	0	0	0	1	0	0	0	3936	652	23	1	376	1	CRY2	11	45877588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	205455	45877588	89128928	11869	20020											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45923466	45923466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgagggggcagggccGgggcctccctgtgccgggca	20	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45923466	T	T	45923466	1	4	9	0	1	0	0	0	0	0	0	0	9376	1131	39	1		1	MAPK8IP1	11	45923466	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45878	45923466	89083050	11870	20021											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45923482	45923482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggggcctccctgtgccGggcactgttgaccacttcca	13	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45923482	T	T	45923482	1	4	9	0	1	0	0	0	0	0	0	0	9376	1131	39	1		1	MAPK8IP1	11	45923482	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16	45923482	89083034	11871	20022											
PEX16	9409	broad.mit.edu	37	chr11	45937806	45937806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttttccgaagctccttcCgtaggatcccgtcattgagc	8	13	1	1	rs143737124	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45937806	A	A	45937806	3	1	9	1	0	0	0	0	1	0	0	0	11838	652	23	1	942	1	PEX16	11	45937806	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14324	45937806	89068710	11872	20023											
PHF21A	51317	broad.mit.edu	37	chr11	45958025	45958025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagcttacaaaaaagtGggtatggataactccttacc	11	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45958025	T	T	45958025	1	4	9	0	1	0	0	0	0	0	0	0	11928	1363	47	2		2	PHF21A	11	45958025	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20219	45958025	89048491	11873	20024											
CHRM4	1132	broad.mit.edu	37	chr11	46407116	46407116	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctgggttgagggccCgcggctgcaggggaggggcg	24	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46407116	G	G	46407116	3	3	9	1	0	0	0	0	1	0	0	0	3410	652	23	4	451	4	CHRM4	11	46407116	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	449091	46407116	88599400	11874	20025											
AMBRA1	55626	broad.mit.edu	37	chr11	46439470	46439470	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagccacttactctggtcGgcagatcaccaggtctcctt	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46439470	T	T	46439470	2	4	9	1	0	0	0	0	0	0	0	1	565	1124	39	1		1	AMBRA1	11	46439470	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32354	46439470	88567046	11875	20026											
AMBRA1	55626	broad.mit.edu	37	chr11	46450713	46450713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaacatctggcaggtctcCgccacgcactggcttcatcc	8	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46450713	A	A	46450713	1	1	9	0	1	0	0	0	0	0	0	0	565	667	23	1		1	AMBRA1	11	46450713	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11243	46450713	88555803	11876	20027											
AMBRA1	55626	broad.mit.edu	37	chr11	46564819	46564819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctggatgccagaagagcGggaggacagcatgtgcagga	16	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46564819	T	T	46564819	3	4	9	1	0	0	0	0	1	0	0	0	565	1116	39	1	2930	1	AMBRA1	11	46564819	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	114106	46564819	88441697	11877	20028											
AMBRA1	55626	broad.mit.edu	37	chr11	46569738	46569738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgttaacccattctaaGgtctcattctaccatcacca	4	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46569738	T	T	46569738	1	4	9	0	1	0	0	0	0	0	0	0	565	1015	35	2		2	AMBRA1	11	46569738	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4919	46569738	88436778	11878	20029											
KIAA0652	9776	broad.mit.edu	37	chr11	46678777	46678777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatccaaaagaactcttcCgaaaatgttaaagttttttt	6	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46678777	A	A	46678777	1	1	9	0	1	0	0	0	0	0	0	0	8258	667	23	1		1	KIAA0652	11	46678777	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	109039	46678777	88327739	11879	20030											
KIAA0652	9776	broad.mit.edu	37	chr11	46686437	46686437	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctatcagcctgctgccctGggcgttggatcagctgacct	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46686437	C	C	46686437	2	2	9	1	0	0	0	0	0	0	0	1	8258	1335	47	4		4	KIAA0652	11	46686437	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7660	46686437	88320079	11880	20031											
ZNF408	79797	broad.mit.edu	37	chr11	46722594	46722594	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagggaggctttctgaccCggaatggaggaggcggagga	19	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46722594	A	A	46722594	1	1	9	0	1	0	0	0	0	0	0	0	18015	667	23	1		1	ZNF408	11	46722594	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	36157	46722594	88283922	11881	20032											
ZNF408	79797	broad.mit.edu	37	chr11	46722648	46722648	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaagaaggcgctgcaactCggtgagtgacctgcgatgtc	16	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46722648	A	A	46722648	2	1	9	1	0	0	0	0	0	0	0	1	18015	898	31	3		3	ZNF408	11	46722648	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	46722648	88283868	11882	20033											
F2	2147	broad.mit.edu	37	chr11	46747648	46747648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctgccgcaacccagacGgggatgaggagggcgtgtgg	17	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46747648	T	T	46747648	3	4	9	1	0	0	0	0	1	0	0	0	5385	1116	39	1	825	1	F2	11	46747648	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25000	46747648	88258868	11883	20034											
F2	2147	broad.mit.edu	37	chr11	46760881	46760881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggctgtgaccgggatGggaaatatggcttctacaca	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46760881	T	T	46760881	3	4	9	1	0	0	0	0	1	0	0	0	5385	1348	47	2	1846	2	F2	11	46760881	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13233	46760881	88245635	11884	20035											
CKAP5	9793	broad.mit.edu	37	chr11	46772931	46772931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcataaggtgtgtagcaGggtctttagggtccttatgg	14	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46772931	T	T	46772931	3	4	9	1	0	0	0	0	1	0	0	0	3476	991	35	2	835	2	CKAP5	11	46772931	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12050	46772931	88233585	11885	20036											
CKAP5	9793	broad.mit.edu	37	chr11	46837706	46837706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctggtgccaaaaaggttGgggactgctgctctagttaa	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46837706	T	T	46837706	1	4	9	0	1	0	0	0	0	0	0	0	3476	1363	47	2		2	CKAP5	11	46837706	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	64775	46837706	88168810	11886	20037											
LRP4	4038	broad.mit.edu	37	chr11	46900560	46900560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacacaggtggctacagcCgccattctccatagcacatg	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46900560	A	A	46900560	3	1	9	1	0	0	0	0	1	0	0	0	9046	652	23	1	2751	1	LRP4	11	46900560	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62854	46900560	88105956	11887	20038											
LRP4	4038	broad.mit.edu	37	chr11	46900745	46900745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctcctgcagagtctccCggtccagccctgtcagccgg	12	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46900745	A	A	46900745	3	1	9	1	0	0	0	0	1	0	0	0	9046	652	23	1	2853	1	LRP4	11	46900745	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	185	46900745	88105771	11888	20039											
LRP4	4038	broad.mit.edu	37	chr11	46918492	46918492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacagcgccaggacaggcGgacacagcggcctgagtgac	14	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46918492	T	T	46918492	3	4	9	1	0	0	0	0	1	0	0	0	9046	1116	39	1	4991	1	LRP4	11	46918492	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17747	46918492	88088024	11889	20040											
C11orf49	79096	broad.mit.edu	37	chr11	47008697	47008697	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgacctcctactaggattGggatcattctttttaaaatc	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47008697	C	C	47008697	1	2	9	0	1	0	0	0	0	0	0	0	1657	1363	47	4		4	C11orf49	11	47008697	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	90205	47008697	87997819	11890	20041											
C11orf49	79096	broad.mit.edu	37	chr11	47073977	47073977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaacacacattctctttcGagaattcagcttcgtccaag	8	11	2	1	rs142495190		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47073977	T	T	47073977	3	4	9	1	0	0	0	0	1	0	0	0	1657	1058	37	3	198	3	C11orf49	11	47073977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65280	47073977	87932539	11891	20042											
C11orf49	79096	broad.mit.edu	37	chr11	47159253	47159253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attactgtgtcctgatttccCgctggagctcactcagaaag	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47159253	A	A	47159253	3	1	9	1	0	0	0	0	1	0	0	0	1657	652	23	1	352	1	C11orf49	11	47159253	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85276	47159253	87847263	11892	20043											
ARFGAP2	84364	broad.mit.edu	37	chr11	47188327	47188327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctctgcatccacctccCgcccaaagaacatgtcagat	5	16	2	2	rs147349872		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47188327	A	A	47188327	3	1	9	1	0	0	0	0	1	0	0	0	852	652	23	1	265	1	ARFGAP2	11	47188327	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29074	47188327	87818189	11893	20044											
ARFGAP2	84364	broad.mit.edu	37	chr11	47196538	47196538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcctgtcaagaacaactGggaaaacggttccttgtggg	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47196538	T	T	47196538	1	4	9	0	1	0	0	0	0	0	0	0	852	1363	47	2		2	ARFGAP2	11	47196538	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8211	47196538	87809978	11894	20045											
ARFGAP2	84364	broad.mit.edu	37	chr11	47196623	47196623	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggagtgattaggaacGgcactactcatgttgtctat	12	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47196623	T	T	47196623	2	4	9	1	0	0	0	0	0	0	0	1	852	1103	39	1		1	ARFGAP2	11	47196623	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85	47196623	87809893	11895	20046											
DDB2	1643	broad.mit.edu	37	chr11	47237822	47237822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaacaaggcttcctttcGgggaattcagcagaaaaacc	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47237822	T	T	47237822	1	4	9	0	1	0	0	0	0	0	0	0	4357	1131	39	1		1	DDB2	11	47237822	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41199	47237822	87768694	11896	20047											
MADD	8567	broad.mit.edu	37	chr11	47295460	47295460	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagataaactgatgaattGgaaccatggtgcaaaagaag	11	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47295460	T	T	47295460	1	4	9	0	1	0	0	0	0	0	0	0	9240	1363	47	2		2	MADD	11	47295460	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	57638	47295460	87711056	11897	20048											
MADD	8567	broad.mit.edu	37	chr11	47307070	47307070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcagagtcagactctcGggcaagctctcccaactcca	9	14	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47307070	T	T	47307070	3	4	9	1	0	0	0	0	1	0	0	0	9240	1116	39	1	2530	1	MADD	11	47307070	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11610	47307070	87699446	11898	20049											
MADD	8567	broad.mit.edu	37	chr11	47307120	47307120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccagcaccgagggcttcGggggcatcatgtcttttgcc	12	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47307120	T	T	47307120	3	4	9	1	0	0	0	0	1	0	0	0	9240	1116	39	1	2580	1	MADD	11	47307120	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	47307120	87699396	11899	20050											
MADD	8567	broad.mit.edu	37	chr11	47310874	47310874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggaacatggctacttaGggctgtgctggcatgagctc	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47310874	T	T	47310874	1	4	9	0	1	0	0	0	0	0	0	0	9240	1015	35	2		2	MADD	11	47310874	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3754	47310874	87695642	11900	20051											
MADD	8567	broad.mit.edu	37	chr11	47350684	47350684	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatctcagaaccccgcccCggcctgtctctagctgatgg	10	15	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47350684	A	A	47350684	2	1	9	1	0	0	0	0	0	0	0	1	9240	643	23	1		1	MADD	11	47350684	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39810	47350684	87655832	11901	20052											
PSMC3	5702	broad.mit.edu	37	chr11	47444404	47444404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgtgcggcacaggcccGggccaggagggtcttccccg	16	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47444404	T	T	47444404	2	4	9	1	0	0	0	0	0	0	0	1	12793	1115	39	1		1	PSMC3	11	47444404	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	93720	47444404	87562112	11902	20053											
CELF1	10658	broad.mit.edu	37	chr11	47493705	47493705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcaacacacagcctcaGggcttcgaatcattaagggt	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47493705	T	T	47493705	1	4	9	0	1	0	0	0	0	0	0	0	3245	1015	35	2		2	CELF1	11	47493705	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49301	47493705	87512811	11903	20054											
CELF1	10658	broad.mit.edu	37	chr11	47510421	47510421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggttttggctcctatccCttaggacgttgatttcatac	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47510421	A	A	47510421	3	1	9	1	0	0	0	0	1	0	0	0	3245	681	24	2	1365	2	CELF1	11	47510421	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16716	47510421	87496095	11904	20055											
CELF1	10658	broad.mit.edu	37	chr11	47510469	47510469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catactgttcgaagagttccCgcaagtccttttcagaccag	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47510469	A	A	47510469	3	1	9	1	0	0	0	0	1	0	0	0	3245	652	23	1	1413	1	CELF1	11	47510469	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	47510469	87496047	11905	20056											
CELF1	10658	broad.mit.edu	37	chr11	47510507	47510507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtccttggaacctggccCacaaacatcttgatagcatc	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47510507	A	A	47510507	2	1	9	1	0	0	0	0	0	0	0	1	3245	581	21	2		2	CELF1	11	47510507	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	47510507	87496009	11906	20057											
PTPMT1	114971	broad.mit.edu	37	chr11	47593155	47593155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacgggcaacaaaggatGggacttttgtcatttcaaag	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47593155	T	T	47593155	3	4	9	1	0	0	0	0	1	0	0	0	12884	1348	47	2	699	2	PTPMT1	11	47593155	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82648	47593155	87413361	11907	20058											
MTCH2	23788	broad.mit.edu	37	chr11	47640472	47640472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctcggctcatattcccCtggaaaacaaaacaaaacaa	4	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47640472	A	A	47640472	1	1	9	0	1	0	0	0	0	0	0	0	10008	695	24	2		2	MTCH2	11	47640472	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47317	47640472	87366044	11908	20059											
AGBL2	79841	broad.mit.edu	37	chr11	47713876	47713876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcagcaaatacttaagtGgcccctctaagtggtcaaca	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47713876	T	T	47713876	1	4	9	0	1	0	0	0	0	0	0	0	376	1363	47	2		2	AGBL2	11	47713876	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	73404	47713876	87292640	11909	20060											
AGBL2	79841	broad.mit.edu	37	chr11	47726199	47726199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaagagctcttggggttctCgaagacgtgggtttacttca	12	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47726199	A	A	47726199	3	1	9	1	0	0	0	0	1	0	0	0	376	884	31	3	2278	3	AGBL2	11	47726199	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12323	47726199	87280317	11910	20061											
AGBL2	79841	broad.mit.edu	37	chr11	47727399	47727399	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcttgaatcttctggtctGgaaggacatgaaatacctct	10	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47727399	C	C	47727399	1	2	9	0	1	0	0	0	0	0	0	0	376	1363	47	4		4	AGBL2	11	47727399	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1200	47727399	87279117	11911	20062											
AGBL2	79841	broad.mit.edu	37	chr11	47732006	47732006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccattcaacaggcattgaGggttattcttccgaacatgc	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47732006	T	T	47732006	3	4	9	1	0	0	0	0	1	0	0	0	376	1000	35	2	2617	2	AGBL2	11	47732006	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4607	47732006	87274510	11912	20063											
FNBP4	23360	broad.mit.edu	37	chr11	47786901	47786901	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctaggaacctcctgcacCgcttcctgttcatctggatt	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47786901	A	A	47786901	2	1	9	1	0	0	0	0	0	0	0	1	6025	639	23	1		1	FNBP4	11	47786901	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54895	47786901	87219615	11913	20064											
NUP160	23279	broad.mit.edu	37	chr11	47808043	47808043	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacagatgagagctgattGgctgctagccaggcccaggc	14	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47808043	T	T	47808043	2	4	9	1	0	0	0	0	0	0	0	1	10852	1335	47	2		2	NUP160	11	47808043	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21142	47808043	87198473	11914	20065											
NUP160	23279	broad.mit.edu	37	chr11	47833904	47833904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttcataatccatttccCgtataagtagtccaattgca	5	10	1	0	rs147299794		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47833904	A	A	47833904	3	1	9	1	0	0	0	0	1	0	0	0	10852	652	23	1	2364	1	NUP160	11	47833904	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25861	47833904	87172612	11915	20066											
NUP160	23279	broad.mit.edu	37	chr11	47869379	47869379	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctaccttccaggggagtTtggcgaaccacaacacttac	8	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47869379	C	C	47869379	1	2	9	0	1	0	0	0	0	0	0	0	10852	1856	64	5		5	NUP160	11	47869379	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	35475	47869379	87137137	11916	20067											
PTPRJ	5795	broad.mit.edu	37	chr11	48145328	48145328	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttcaggtcaatatctcGggcctgaagccaggggttca	12	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48145328	T	T	48145328	2	4	9	1	0	0	0	0	0	0	0	1	12912	1103	39	1		1	PTPRJ	11	48145328	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	275949	48145328	86861188	11917	20068											
PTPRJ	5795	broad.mit.edu	37	chr11	48146645	48146645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacggaagtcctgcttgtcGggttagagcctggcacccga	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48146645	T	T	48146645	3	4	9	1	0	0	0	0	1	0	0	0	12912	1116	39	1	1022	1	PTPRJ	11	48146645	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1317	48146645	86859871	11918	20069											
PTPRJ	5795	broad.mit.edu	37	chr11	48186004	48186004	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatagagaatgagaacacCgtggatgtgtatgggattgt	14	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48186004	A	A	48186004	2	1	9	1	0	0	0	0	0	0	0	1	12912	639	23	1		1	PTPRJ	11	48186004	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39359	48186004	86820512	11919	20070											
OR4X1	390113	broad.mit.edu	37	chr11	48285387	48285387	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgatttctgtgattccaGgctgtcagctcctgtgcttt	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48285387	T	T	48285387	1	4	9	0	1	0	0	0	0	0	0	0	11178	1015	35	2		2	OR4X1	11	48285387	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	99383	48285387	86721129	11920	20071											
OR4C3	256144	broad.mit.edu	37	chr11	48346888	48346888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttggagctcattttttGggaggtgttgagatcattct	11	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48346888	T	T	48346888	3	4	9	1	0	0	0	0	1	0	0	0	11144	1339	47	2	398	2	OR4C3	11	48346888	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61501	48346888	86659628	11921	20072											
OR4C13	283092	broad.mit.edu	37	chr11	49974640	49974640	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtggtcatactgtactcCttaaagacccacagcttaga	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49974640	A	A	49974640	2	1	9	1	0	0	0	0	0	0	0	1	11141	668	24	2		2	OR4C13	11	49974640	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1627752	49974640	85031876	11922	20073											
OR4C12	283093	broad.mit.edu	37	chr11	50003722	50003722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatgatctcagtagcacCaaaaatgtgttctgcatagg	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50003722	A	A	50003722	3	1	9	1	0	0	0	0	1	0	0	0	11140	594	21	2	617	2	OR4C12	11	50003722	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29082	50003722	85002794	11923	20074											
OR4C46	119749	broad.mit.edu	37	chr11	51515597	51515597	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggagaacatttcttcGgaggtgcagagggcatccta	12	8	2	2	rs143364299		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51515597	T	T	51515597	4	4	9	1	0	0	0	0	0	1	0	0	11145	1117	39	1	318	1	OR4C46	11	51515597	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1511875	51515597	83490919	11924	20075											
TRIM48	79097	broad.mit.edu	37	chr11	55032453	55032453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaactacttcatagaccCggtcaccatagactgtgggc	9	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55032453	A	A	55032453	3	1	9	1	0	0	0	0	1	0	0	0	16648	652	23	1	128	1	TRIM48	11	55032453	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3516856	55032453	79974063	11925	20076											
TRIM48	79097	broad.mit.edu	37	chr11	55038463	55038463	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggaacccctttatccCagaaagccctcttccttgtg	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55038463	A	A	55038463	1	1	9	0	1	0	0	0	0	0	0	0	16648	609	21	2		2	TRIM48	11	55038463	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	6010	55038463	79968053	11926	20077											
OR4C15	81309	broad.mit.edu	37	chr11	55322130	55322130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctatgtacttcttcttGggcttcctgtccttcctgga	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55322130	T	T	55322130	3	4	9	1	0	0	0	0	1	0	0	0	11142	1339	47	2	350	2	OR4C15	11	55322130	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	283667	55322130	79684386	11927	20078											
OR4C16	219428	broad.mit.edu	37	chr11	55339770	55339770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccaggcacttaagaaccCaatgttcttcttccttttct	5	13	3	1	rs144335894	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55339770	A	A	55339770	3	1	9	1	0	0	0	0	1	0	0	0	11143	594	21	2	169	2	OR4C16	11	55339770	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17640	55339770	79666746	11928	20079											
OR5D16	390144	broad.mit.edu	37	chr11	55606391	55606391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatcatcaaaattaaccCaaaattgcatacccccatgt	4	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55606391	A	A	55606391	3	1	9	1	0	0	0	0	1	0	0	0	11250	594	21	2	166	2	OR5D16	11	55606391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	266621	55606391	79400125	11929	20080											
OR5D16	390144	broad.mit.edu	37	chr11	55606864	55606864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttaatgagataagcacaCtactcatcattctgacatct	4	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55606864	A	A	55606864	3	1	9	1	0	0	0	0	1	0	0	0	11250	564	20	3	639	3	OR5D16	11	55606864	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	473	55606864	79399652	11930	20081											
SPRYD5	84767	broad.mit.edu	37	chr11	55648706	55648706	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctcaggcctacctttcGgtgtattcacctctgaccag	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55648706	T	T	55648706	1	4	9	0	1	0	0	0	0	0	0	0	15229	1131	39	1		1	SPRYD5	11	55648706	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	41842	55648706	79357810	11931	20082											
OR5I1	10798	broad.mit.edu	37	chr11	55703186	55703186	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcctcccactgaaagagcGgatctttaagactgagagaa	9	10	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55703186	C	C	55703186	3	2	9	1	0	0	0	0	1	0	0	0	11258	1116	39	4	256	4	OR5I1	11	55703186	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54480	55703186	79303330	11932	20083											
OR5F1	338674	broad.mit.edu	37	chr11	55761692	55761692	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttttaggtagacggtcctgGacatgatcaaggagtaaagc	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55761692	A	A	55761692	3	1	9	1	0	0	0	0	1	0	0	0	11252	1174	41	4	537	4	OR5F1	11	55761692	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58506	55761692	79244824	11933	20084											
OR5AS1	219447	broad.mit.edu	37	chr11	55798439	55798439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattttttctgtgatatccCacctcttctggctttatcat	4	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55798439	A	A	55798439	3	1	9	1	0	0	0	0	1	0	0	0	11240	594	21	2	547	2	OR5AS1	11	55798439	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36747	55798439	79208077	11934	20085											
OR8I2	120586	broad.mit.edu	37	chr11	55861049	55861049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaatttccaatccaatcGgagatccatctcctttgttg	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55861049	T	T	55861049	3	4	9	1	0	0	0	0	1	0	0	0	11334	1116	39	1	268	1	OR8I2	11	55861049	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62610	55861049	79145467	11935	20086											
OR8H2	390151	broad.mit.edu	37	chr11	55872561	55872561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgtggctgacttcatcCttatgggactgacactttct	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55872561	A	A	55872561	3	1	9	1	0	0	0	0	1	0	0	0	11332	681	24	2	45	2	OR8H2	11	55872561	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11512	55872561	79133955	11936	20087											
OR8H2	390151	broad.mit.edu	37	chr11	55872695	55872695	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctccagcttcacactccCatgtattttttccttactca	3	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55872695	A	A	55872695	2	1	9	1	0	0	0	0	0	0	0	1	11332	581	21	2		2	OR8H2	11	55872695	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	55872695	79133821	11937	20088											
OR8H2	390151	broad.mit.edu	37	chr11	55873103	55873103	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactgatacatacaacacCgaaatcctgatattcattat	4	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55873103	A	A	55873103	2	1	9	1	0	0	0	0	0	0	0	1	11332	639	23	1		1	OR8H2	11	55873103	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	408	55873103	79133413	11938	20089											
OR8H3	390152	broad.mit.edu	37	chr11	55889948	55889948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttatgctatttctcCtcatatacctaattactatg	3	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55889948	A	A	55889948	3	1	9	1	0	0	0	0	1	0	0	0	11333	681	24	2	102	2	OR8H3	11	55889948	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16845	55889948	79116568	11939	20090											
OR8H3	390152	broad.mit.edu	37	chr11	55889971	55889971	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatacctaattactatgctGgggaatgtggggatgctatt	11	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55889971	T	T	55889971	2	4	9	1	0	0	0	0	0	0	0	1	11333	1335	47	2		2	OR8H3	11	55889971	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	55889971	79116545	11940	20091											
OR8H3	390152	broad.mit.edu	37	chr11	55890133	55890133	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaactatatttccttcacGggctgctttgcccagatgtt	7	12	1	1	rs117742871		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890133	T	T	55890133	2	4	9	1	0	0	0	0	0	0	0	1	11333	1103	39	1		1	OR8H3	11	55890133	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	162	55890133	79116383	11941	20092											
OR8H3	390152	broad.mit.edu	37	chr11	55890652	55890652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaaagtcttattccttGggaagagatcaagtggctcc	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890652	T	T	55890652	3	4	9	1	0	0	0	0	1	0	0	0	11333	1339	47	2	806	2	OR8H3	11	55890652	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	519	55890652	79115864	11942	20093											
OR8K5	219453	broad.mit.edu	37	chr11	55927037	55927037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatgaagagtagagaccCatagaacacaaccaccactg	8	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55927037	A	A	55927037	3	1	9	1	0	0	0	0	1	0	0	0	11339	594	21	2	169	2	OR8K5	11	55927037	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36385	55927037	79079479	11943	20094											
OR5J2	282775	broad.mit.edu	37	chr11	55944491	55944491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagtcccttgctttacaCtgtagccatgtctgatagaa	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944491	A	A	55944491	3	1	9	1	0	0	0	0	1	0	0	0	11259	565	20	3	400	3	OR5J2	11	55944491	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17454	55944491	79062025	11944	20095											
OR5T2	219464	broad.mit.edu	37	chr11	55999684	55999684	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcaaactgtagatgacGggattcagcaagggaatcac	10	9	3	2	rs141189792	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55999684	T	T	55999684	2	4	9	1	0	0	0	0	0	0	0	1	11276	1103	39	1		1	OR5T2	11	55999684	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55193	55999684	79006832	11945	20096											
OR8K3	219473	broad.mit.edu	37	chr11	56085911	56085911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcagtgatgggcaatttGggcatgattgtcctcaccaa	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56085911	T	T	56085911	3	4	9	1	0	0	0	0	1	0	0	0	11338	1339	47	2	131	2	OR8K3	11	56085911	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86227	56085911	78920605	11946	20097											
OR5R1	219479	broad.mit.edu	37	chr11	56185197	56185197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatggttaattaagtttGggccacagtaagtcagacgg	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56185197	T	T	56185197	3	4	9	1	0	0	0	0	1	0	0	0	11274	1348	47	2	464	2	OR5R1	11	56185197	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99286	56185197	78821319	11947	20098											
OR5M10	390167	broad.mit.edu	37	chr11	56344320	56344320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggattacatctctgttcCgtaggctatagatcaatggg	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56344320	A	A	56344320	3	1	9	1	0	0	0	0	1	0	0	0	11267	652	23	1	73	1	OR5M10	11	56344320	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	159123	56344320	78662196	11948	20099											
OR5M10	390167	broad.mit.edu	37	chr11	56345112	56345112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagatcgccaggaacaccCcaaacaggatcttctctagc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56345112	A	A	56345112	3	1	9	1	0	0	0	0	1	0	0	0	11267	623	22	2	865	2	OR5M10	11	56345112	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	792	56345112	78661404	11949	20100											
OR5AR1	219493	broad.mit.edu	37	chr11	56431282	56431282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacctggttaatgtagtgGggaatattggtatgattatc	11	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56431282	T	T	56431282	3	4	9	1	0	0	0	0	1	0	0	0	11239	1232	43	2	123	2	OR5AR1	11	56431282	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86170	56431282	78575234	11950	20101											
OR9G9	504191	broad.mit.edu	37	chr11	56468096	56468096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattcttctgtctacacccCaaagatcctagtgacctgca	6	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468096	A	A	56468096	3	1	9	1	0	0	0	0	1	0	0	0	11346	594	21	2	235	2	OR9G9	11	56468096	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36814	56468096	78538420	11951	20102											
OR9G9	504191	broad.mit.edu	37	chr11	56468556	56468556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggatctcctcctccaaGggctacctcaaagccttctc	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56468556	T	T	56468556	3	4	9	1	0	0	0	0	1	0	0	0	11346	991	35	2	695	2	OR9G9	11	56468556	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	460	56468556	78537960	11952	20103											
OR5AK2	390181	broad.mit.edu	37	chr11	56756800	56756800	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatactgtaatcatgtccCgaacagtctgcatccgtttg	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56756800	A	A	56756800	2	1	9	1	0	0	0	0	0	0	0	1	11236	644	23	1		1	OR5AK2	11	56756800	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	288244	56756800	78249716	11953	20104											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57075876	57075876	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgttcattaccttgctcCgaagctgagggcttctcctg	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57075876	A	A	57075876	4	1	9	1	0	0	0	0	0	1	0	0	16443	661	23	1	904	1	TNKS1BP1	11	57075876	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	319076	57075876	77930640	11954	20105											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57075908	57075908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcctgtctccattccaGggtctgcagggtgtggctcc	11	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57075908	T	T	57075908	3	4	9	1	0	0	0	0	1	0	0	0	16443	1000	35	2	936	2	TNKS1BP1	11	57075908	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	57075908	77930608	11955	20106											
SSRP1	6749	broad.mit.edu	37	chr11	57094835	57094835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttccaatgctcaacttcGgcctgttaaaaaaaaaaaag	5	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57094835	T	T	57094835	1	4	9	0	1	0	0	0	0	0	0	0	15312	1131	39	1		1	SSRP1	11	57094835	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18927	57094835	77911681	11956	20107											
SSRP1	6749	broad.mit.edu	37	chr11	57097813	57097813	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattggcattctcctcccGgatcttgccttcctccttca	6	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57097813	T	T	57097813	2	4	9	1	0	0	0	0	0	0	0	1	15312	1115	39	1		1	SSRP1	11	57097813	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2978	57097813	77908703	11957	20108											
SSRP1	6749	broad.mit.edu	37	chr11	57102673	57102673	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaactgggagctgggcccCaactcctgagtgggtgtgcg	16	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57102673	A	A	57102673	1	1	9	0	1	0	0	0	0	0	0	0	15312	609	21	2		2	SSRP1	11	57102673	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	4860	57102673	77903843	11958	20109											
P2RX3	5024	broad.mit.edu	37	chr11	57106132	57106132	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcagcttctgatcatctcCtactttgtagggtgagtctg	10	9	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57106132	A	A	57106132	2	1	9	1	0	0	0	0	0	0	0	1	11435	668	24	2		2	P2RX3	11	57106132	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3459	57106132	77900384	11959	20110											
P2RX3	5024	broad.mit.edu	37	chr11	57114548	57114548	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtccctgtctcactgattGggactgttggatgtttttct	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57114548	T	T	57114548	1	4	9	0	1	0	0	0	0	0	0	0	11435	1363	47	2		2	P2RX3	11	57114548	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8416	57114548	77891968	11960	20111											
PRG3	10394	broad.mit.edu	37	chr11	57146264	57146264	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatagagacaaggttgcctcCgtagcatctgctgcagacat	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57146264	A	A	57146264	4	1	9	1	0	0	0	0	0	1	0	0	12586	661	23	1	292	1	PRG3	11	57146264	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31716	57146264	77860252	11961	20112											
PRG3	10394	broad.mit.edu	37	chr11	57146356	57146356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtctccaggcaagagccCggcatcccttttcaggttaa	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57146356	A	A	57146356	1	1	9	0	1	0	0	0	0	0	0	0	12586	667	23	1		1	PRG3	11	57146356	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	57146356	77860160	11962	20113											
SLC43A1	8501	broad.mit.edu	37	chr11	57259257	57259257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccatgtagaagatgatcCgcagctgggtcatgcccatg	12	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57259257	A	A	57259257	3	1	9	1	0	0	0	0	1	0	0	0	14746	652	23	1	757	1	SLC43A1	11	57259257	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	112901	57259257	77747259	11963	20114											
SERPING1	710	broad.mit.edu	37	chr11	57379152	57379152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggccaggagagagatgcGgtaggaagactgttaagatg	18	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57379152	T	T	57379152	1	4	9	0	1	0	0	0	0	0	0	0	14229	1131	39	1		1	SERPING1	11	57379152	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	119895	57379152	77627364	11964	20115											
MED19	219541	broad.mit.edu	37	chr11	57472215	57472215	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacaggatcctgggtacGgctctgtttgtgcttgtgct	16	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57472215	T	T	57472215	3	4	9	1	0	0	0	0	1	0	0	0	9530	1116	39	1	45	1	MED19	11	57472215	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	93063	57472215	77534301	11965	20116											
CTNND1	1500	broad.mit.edu	37	chr11	57569560	57569560	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaagaatatctcttttGgacgtgaccaggataacaag	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57569560	T	T	57569560	4	4	9	1	0	0	0	0	0	1	0	0	4053	1349	47	2	1330	2	CTNND1	11	57569560	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97345	57569560	77436956	11966	20117											
CTNND1	1500	broad.mit.edu	37	chr11	57575944	57575944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgactaatgaacatgaacGggtggtgaaagctgcatctg	12	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57575944	T	T	57575944	3	4	9	1	0	0	0	0	1	0	0	0	4053	1116	39	1	2220	1	CTNND1	11	57575944	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6384	57575944	77430572	11967	20118											
OR6Q1	219952	broad.mit.edu	37	chr11	57798475	57798475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaactgaatttgtcatgatGggctttgctggcatccatga	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57798475	T	T	57798475	3	4	9	1	0	0	0	0	1	0	0	0	11302	1348	47	2	53	2	OR6Q1	11	57798475	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	222531	57798475	77208041	11968	20119											
OR1S2	219958	broad.mit.edu	37	chr11	57971205	57971205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagtgccgaacctggccCgcatgaaagttgtatagttc	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57971205	A	A	57971205	3	1	9	1	0	0	0	0	1	0	0	0	11067	652	23	1	531	1	OR1S2	11	57971205	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	172730	57971205	77035311	11969	20120											
OR1S2	219958	broad.mit.edu	37	chr11	57971488	57971488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatagccacaatgatgagccCgttcccaaccacagtgacca	8	14	0	3	rs113930497		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57971488	A	A	57971488	3	1	9	1	0	0	0	0	1	0	0	0	11067	652	23	1	814	1	OR1S2	11	57971488	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	283	57971488	77035028	11970	20121											
OR1S1	219959	broad.mit.edu	37	chr11	57982382	57982382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcactgtgattgggaacGggctcatcattgtggctatc	13	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57982382	T	T	57982382	3	4	9	1	0	0	0	0	1	0	0	0	11066	1116	39	1	168	1	OR1S1	11	57982382	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10894	57982382	77024134	11971	20122											
OR10Q1	219960	broad.mit.edu	37	chr11	57996163	57996163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacaggaagaaatacatcGgggtgcggagggtgctgtgt	18	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57996163	T	T	57996163	3	4	9	1	0	0	0	0	1	0	0	0	11010	1116	39	1	778	1	OR10Q1	11	57996163	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13781	57996163	77010353	11972	20123											
OR5B12	390191	broad.mit.edu	37	chr11	58207554	58207554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaagactatgaagagtGggatctgcagttctgggtca	14	5	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207554	T	T	58207554	3	4	9	1	0	0	0	0	1	0	0	0	11242	1348	47	2	877	2	OR5B12	11	58207554	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	211391	58207554	76798962	11973	20124											
OR5B12	390191	broad.mit.edu	37	chr11	58207586	58207586	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggtcatcagttaacccCacaaggatgaattcagtcac	8	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58207586	A	A	58207586	2	1	9	1	0	0	0	0	0	0	0	1	11242	581	21	2		2	OR5B12	11	58207586	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	58207586	76798930	11974	20125											
LPXN	9404	broad.mit.edu	37	chr11	58317506	58317506	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagttggtggtagtcgttGgggcagtaggccaagccact	15	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58317506	T	T	58317506	2	4	9	1	0	0	0	0	0	0	0	1	9016	1335	47	2		2	LPXN	11	58317506	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	109920	58317506	76689010	11975	20126											
ZFP91	80829	broad.mit.edu	37	chr11	58380260	58380260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctccaatccagtatgtcCgttgtgagatggaaggatgt	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58380260	A	A	58380260	3	1	9	1	0	0	0	0	1	0	0	0	17781	652	23	1	964	1	ZFP91	11	58380260	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62754	58380260	76626256	11976	20127											
GLYAT	10249	broad.mit.edu	37	chr11	58477601	58477601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattcaccaagtgagcatGggtaacatccatggatgaga	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58477601	T	T	58477601	3	4	9	1	0	0	0	0	1	0	0	0	6543	1348	47	2	365	2	GLYAT	11	58477601	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	97341	58477601	76528915	11977	20128											
GLYATL1	92292	broad.mit.edu	37	chr11	58723478	58723478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccaatggacttgctaccCacagaatctagttccatttt	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58723478	A	A	58723478	3	1	9	1	0	0	0	0	1	0	0	0	6544	594	21	2	1006	2	GLYATL1	11	58723478	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	245877	58723478	76283038	11978	20129											
FAM111B	374393	broad.mit.edu	37	chr11	58892585	58892585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attatattaaagataaaactCgccagacaattcccaggatt	5	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58892585	A	A	58892585	3	1	9	1	0	0	0	0	1	0	0	0	5446	884	31	3	1021	3	FAM111B	11	58892585	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	169107	58892585	76113931	11979	20130											
FAM111B	374393	broad.mit.edu	37	chr11	58892633	58892633	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacttttgtagtttgcccCgaaaatataggcaaataaac	6	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58892633	A	A	58892633	2	1	9	1	0	0	0	0	0	0	0	1	5446	644	23	1		1	FAM111B	11	58892633	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	58892633	76113883	11980	20131											
FAM111B	374393	broad.mit.edu	37	chr11	58892820	58892820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtaagaaaatattttcGggaagaacaaaagagaatga	12	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58892820	T	T	58892820	3	4	9	1	0	0	0	0	1	0	0	0	5446	1116	39	1	1256	1	FAM111B	11	58892820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	187	58892820	76113696	11981	20132											
FAM111A	63901	broad.mit.edu	37	chr11	58919562	58919562	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagagtacataaaccttGgaatgcccctcagttgtttc	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58919562	T	T	58919562	4	4	9	1	0	0	0	0	0	1	0	0	5445	1349	47	2	427	2	FAM111A	11	58919562	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26742	58919562	76086954	11982	20133											
DTX4	23220	broad.mit.edu	37	chr11	58949675	58949675	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaacatgccgcctcctggAgtggtcaagctacccccact	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58949675	C	C	58949675	2	2	9	1	0	0	0	0	0	0	0	1	4837	291	11	5		5	DTX4	11	58949675	Silent	SNP	A	TCGA-05-4396-01A-21D-1855-08	30113	58949675	76056841	11983	20134											
MPEG1	219972	broad.mit.edu	37	chr11	58979247	58979247	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgcaggagccatcatcCgtgttggcctgaaaattgaa	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58979247	A	A	58979247	2	1	9	1	0	0	0	0	0	0	0	1	9817	639	23	1		1	MPEG1	11	58979247	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29572	58979247	76027269	11984	20135											
MPEG1	219972	broad.mit.edu	37	chr11	58979894	58979894	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtttcttacctgaactcGggtagttatagcttggtcct	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58979894	T	T	58979894	2	4	9	1	0	0	0	0	0	0	0	1	9817	1124	39	1		1	MPEG1	11	58979894	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	647	58979894	76026622	11985	20136											
OR5A2	219981	broad.mit.edu	37	chr11	59189575	59189575	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatgatgggattcaccacGgggatcaccaaggcatagaa	12	8	2	3	rs150394868		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59189575	T	T	59189575	2	4	9	1	0	0	0	0	0	0	0	1	11234	1103	39	1		1	OR5A2	11	59189575	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	209681	59189575	75816941	11986	20137											
OR5A2	219981	broad.mit.edu	37	chr11	59190193	59190193	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacagcatcttaggggcGgtggaggacacatagcagat	14	8	2	2	rs142966772	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59190193	T	T	59190193	2	4	9	1	0	0	0	0	0	0	0	1	11234	1103	39	1		1	OR5A2	11	59190193	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	618	59190193	75816323	11987	20138											
OR4D6	219983	broad.mit.edu	37	chr11	59224593	59224593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactattacctgtgagtccCgcctacacactcctatgtac	5	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59224593	A	A	59224593	3	1	9	1	0	0	0	0	1	0	0	0	11152	652	23	1	162	1	OR4D6	11	59224593	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34400	59224593	75781923	11988	20139											
OR4D6	219983	broad.mit.edu	37	chr11	59224934	59224934	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgatgcttccattcccCttctgtggccccaacacact	5	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59224934	A	A	59224934	2	1	9	1	0	0	0	0	0	0	0	1	11152	668	24	2		2	OR4D6	11	59224934	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	341	59224934	75781582	11989	20140											
OR4D6	219983	broad.mit.edu	37	chr11	59225261	59225261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatatccattaataacacGgtcattacccccatgctgaa	4	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59225261	T	T	59225261	2	4	9	1	0	0	0	0	0	0	0	1	11152	1103	39	1		1	OR4D6	11	59225261	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	327	59225261	75781255	11990	20141											
OR4D10	390197	broad.mit.edu	37	chr11	59244964	59244964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggcctgacccagaatcGggaagtgagcttagtcttat	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59244964	T	T	59244964	3	4	9	1	0	0	0	0	1	0	0	0	11148	1116	39	1	64	1	OR4D10	11	59244964	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19703	59244964	75761552	11991	20142											
OR4D11	219986	broad.mit.edu	37	chr11	59271827	59271827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatctatgtctatgcccGgcccttcactgccctcccca	6	19	3	0	rs111578297		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59271827	T	T	59271827	3	4	9	1	0	0	0	0	1	0	0	0	11149	1116	39	1	781	1	OR4D11	11	59271827	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26863	59271827	75734689	11992	20143											
OSBP	5007	broad.mit.edu	37	chr11	59345622	59345622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcatgctgatactcacGgtaaaggattccttttccac	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59345622	T	T	59345622	3	4	9	1	0	0	0	0	1	0	0	0	11367	1130	39	1	375	1	OSBP	11	59345622	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73795	59345622	75660894	11993	20144											
OSBP	5007	broad.mit.edu	37	chr11	59345683	59345683	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcttcatggcctctctgtcGagcatcacccccattttccc	6	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59345683	T	T	59345683	2	4	9	1	0	0	0	0	0	0	0	1	11367	1066	37	3		3	OSBP	11	59345683	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	61	59345683	75660833	11994	20145											
PATL1	219988	broad.mit.edu	37	chr11	59410261	59410261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaaagaagcctttttccCaagttgctagagatacagca	8	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59410261	A	A	59410261	1	1	9	0	1	0	0	0	0	0	0	0	11569	609	21	2		2	PATL1	11	59410261	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	64578	59410261	75596255	11995	20146											
PATL1	219988	broad.mit.edu	37	chr11	59420390	59420390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagacccaatccttttccCgctgcaacatgagattggca	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59420390	A	A	59420390	3	1	9	1	0	0	0	0	1	0	0	0	11569	652	23	1	1129	1	PATL1	11	59420390	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10129	59420390	75586126	11996	20147											
PATL1	219988	broad.mit.edu	37	chr11	59420424	59420424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggcatatggatcctttcGgagatgatcttgatgactgc	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59420424	T	T	59420424	2	4	9	1	0	0	0	0	0	0	0	1	11569	1124	39	1		1	PATL1	11	59420424	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	59420424	75586092	11997	20148											
OR10V1	390201	broad.mit.edu	37	chr11	59480501	59480501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggccacagataccaccCggcccatctcaggagagtag	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59480501	A	A	59480501	3	1	9	1	0	0	0	0	1	0	0	0	11014	652	23	1	115	1	OR10V1	11	59480501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60077	59480501	75526015	11998	20149											
STX3	6809	broad.mit.edu	37	chr11	59540716	59540716	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatgatgatactgatgcGgttgagattgctatcgacaa	12	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59540716	T	T	59540716	2	4	9	1	0	0	0	0	0	0	0	1	15464	1103	39	1		1	STX3	11	59540716	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60215	59540716	75465800	11999	20150											
MRPL16	54948	broad.mit.edu	37	chr11	59573862	59573862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttgccccagtatttcccCttgtgggtcaagtcatatgg	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59573862	A	A	59573862	3	1	9	1	0	0	0	0	1	0	0	0	9875	680	24	2	45	2	MRPL16	11	59573862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33146	59573862	75432654	12000	20151											
MRPL16	54948	broad.mit.edu	37	chr11	59575155	59575155	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttccatcccattgctgctCgatgctgaattcactcacca	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59575155	A	A	59575155	1	1	9	0	1	0	0	0	0	0	0	0	9875	899	31	3		3	MRPL16	11	59575155	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1293	59575155	75431361	12001	20152											
GIF	2694	broad.mit.edu	37	chr11	59612860	59612860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcacagcatgaactctGggtctgggtactagtcccag	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59612860	T	T	59612860	3	4	9	1	0	0	0	0	1	0	0	0	6440	1357	47	2	1222	2	GIF	11	59612860	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37705	59612860	75393656	12002	20153											
TCN1	6947	broad.mit.edu	37	chr11	59630149	59630149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcgttacgacatactccCaaagccagtataatcaaggc	7	12	2	0	rs76646357		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59630149	A	A	59630149	3	1	9	1	0	0	0	0	1	0	0	0	15828	593	21	2	1023	2	TCN1	11	59630149	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17289	59630149	75376367	12003	20154											
TCN1	6947	broad.mit.edu	37	chr11	59631428	59631428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggatcatcttttgcatcaGggtttggatctggattccaa	10	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59631428	T	T	59631428	3	4	9	1	0	0	0	0	1	0	0	0	15828	991	35	2	1122	2	TCN1	11	59631428	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1279	59631428	75375088	12004	20155											
PLAC1L	219990	broad.mit.edu	37	chr11	59814543	59814543	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttctagtccaaacttgctCtgagctaaaggagaaatgga	9	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59814543	A	A	59814543	2	1	9	1	0	0	0	0	0	0	0	1	12108	900	32	3		3	PLAC1L	11	59814543	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	183115	59814543	75191973	12005	20156											
MS4A3	932	broad.mit.edu	37	chr11	59830059	59830059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttctacacaggctaccCgatttggggtgctgtgtttg	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59830059	A	A	59830059	3	1	9	1	0	0	0	0	1	0	0	0	9955	652	23	1	281	1	MS4A3	11	59830059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15516	59830059	75176457	12006	20157											
MS4A2	2206	broad.mit.edu	37	chr11	59860923	59860923	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcatagctgggggaacGggaattaccatcctgatcat	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59860923	T	T	59860923	2	4	9	1	0	0	0	0	0	0	0	1	9954	1103	39	1		1	MS4A2	11	59860923	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30864	59860923	75145593	12007	20158											
MS4A5	64232	broad.mit.edu	37	chr11	60198308	60198308	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattatgaccttttcttttGgagttatcttccttttcacc	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60198308	T	T	60198308	4	4	9	1	0	0	0	0	0	1	0	0	9957	1349	47	2	199	2	MS4A5	11	60198308	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	337385	60198308	74808208	12008	20159											
MS4A5	64232	broad.mit.edu	37	chr11	60215190	60215190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgcctttctcaattttGgggtgccactcagaggattg	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60215190	T	T	60215190	3	4	9	1	0	0	0	0	1	0	0	0	9957	1339	47	2	579	2	MS4A5	11	60215190	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16882	60215190	74791326	12009	20160											
MS4A12	54860	broad.mit.edu	37	chr11	60269504	60269504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatccaaggagctttccCgttgtctggtaagttagact	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60269504	A	A	60269504	3	1	9	1	0	0	0	0	1	0	0	0	9950	652	23	1	473	1	MS4A12	11	60269504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54314	60269504	74737012	12010	20161											
TMEM132A	54972	broad.mit.edu	37	chr11	60698019	60698019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcatgtgacagccgccCgcccagcccagcccacactc	10	20	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60698019	A	A	60698019	3	1	9	1	0	0	0	0	1	0	0	0	16168	652	23	1	922	1	TMEM132A	11	60698019	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	428515	60698019	74308497	12011	20162											
TMEM132A	54972	broad.mit.edu	37	chr11	60703950	60703950	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcagcgcaaagaacctccCgacagtgccactgaccccac	7	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60703950	A	A	60703950	2	1	9	1	0	0	0	0	0	0	0	1	16168	639	23	1		1	TMEM132A	11	60703950	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5931	60703950	74302566	12012	20163											
SLC15A3	51296	broad.mit.edu	37	chr11	60709507	60709507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatgctttatctctcacCgtgtagctgctgccctgggc	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60709507	A	A	60709507	2	1	9	1	0	0	0	0	0	0	0	1	14513	666	23	1		1	SLC15A3	11	60709507	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5557	60709507	74297009	12013	20164											
CD6	923	broad.mit.edu	37	chr11	60780823	60780823	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaagcaggtcagctttacaGagaatggaaaggcaagaaga	14	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60780823	T	T	60780823	1	4	9	0	1	0	0	0	0	0	0	0	3058	957	33	3		3	CD6	11	60780823	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	71316	60780823	74225693	12014	20165											
VPS37C	55048	broad.mit.edu	37	chr11	60906347	60906347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtaacgaacaggcagccCaagacgaagggacccccgag	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60906347	A	A	60906347	1	1	9	0	1	0	0	0	0	0	0	0	17334	609	21	2		2	VPS37C	11	60906347	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	125524	60906347	74100169	12015	20166											
VWCE	220001	broad.mit.edu	37	chr11	61050253	61050253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaccacagggtcctcccCgccttacctacacaggagtg	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61050253	A	A	61050253	1	1	9	0	1	0	0	0	0	0	0	0	17372	667	23	1		1	VWCE	11	61050253	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	143906	61050253	73956263	12016	20167											
VWCE	220001	broad.mit.edu	37	chr11	61050415	61050415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagactggggttcatttcccCaacagaaccttggaaatata	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61050415	A	A	61050415	1	1	9	0	1	0	0	0	0	0	0	0	17372	609	21	2		2	VWCE	11	61050415	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	162	61050415	73956101	12017	20168											
DDB1	1642	broad.mit.edu	37	chr11	61076484	61076484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctggctaacagcttccCgttaaattccaccatagagt	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61076484	A	A	61076484	3	1	9	1	0	0	0	0	1	0	0	0	4356	652	23	1	818	1	DDB1	11	61076484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26069	61076484	73930032	12018	20169											
DDB1	1642	broad.mit.edu	37	chr11	61081864	61081864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacctggctgctattgcagGaggccacactgatgttcttg	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61081864	T	T	61081864	3	4	9	1	0	0	0	0	1	0	0	0	4356	1174	41	3	1977	3	DDB1	11	61081864	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5380	61081864	73924652	12019	20170											
DDB1	1642	broad.mit.edu	37	chr11	61083927	61083927	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccccacctcacaaccttctCaccagcacctacagctggca	4	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61083927	A	A	61083927	1	1	9	0	1	0	0	0	0	0	0	0	4356	841	29	3		3	DDB1	11	61083927	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2063	61083927	73922589	12020	20171											
DDB1	1642	broad.mit.edu	37	chr11	61089129	61089129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattccattccggatgatcCgcaaagaaccttccttgaaa	6	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61089129	A	A	61089129	3	1	9	1	0	0	0	0	1	0	0	0	4356	652	23	1	2331	1	DDB1	11	61089129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5202	61089129	73917387	12021	20172											
DDB1	1642	broad.mit.edu	37	chr11	61091471	61091471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccaaggagttctacacGgagatccttgagagtgacgg	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61091471	T	T	61091471	3	4	9	1	0	0	0	0	1	0	0	0	4356	1116	39	1	2605	1	DDB1	11	61091471	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2342	61091471	73915045	12022	20173											
DDB1	1642	broad.mit.edu	37	chr11	61091490	61091490	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagatccttgagagtgacGgtgccatccatctgttcctc	11	12	1	3	rs56096142	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61091490	T	T	61091490	2	4	9	1	0	0	0	0	0	0	0	1	4356	1103	39	1		1	DDB1	11	61091490	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	61091490	73915026	12023	20174											
TMEM138	51524	broad.mit.edu	37	chr11	61133659	61133659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacagctgtgtactttgccCtcagcatctcccttcatgtc	7	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61133659	A	A	61133659	3	1	9	1	0	0	0	0	1	0	0	0	16176	681	24	2	277	2	TMEM138	11	61133659	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42169	61133659	73872857	12024	20175											
CPSF7	79869	broad.mit.edu	37	chr11	61183254	61183254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggtggagggcccgaatctCggctgtacagagaaaatacc	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61183254	A	A	61183254	3	1	9	1	0	0	0	0	1	0	0	0	3862	884	31	3	459	3	CPSF7	11	61183254	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49595	61183254	73823262	12025	20176											
SDHAF2	54949	broad.mit.edu	37	chr11	61205212	61205212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggacatgattgaaatccCtttgcctccatggcaggaga	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61205212	A	A	61205212	3	1	9	1	0	0	0	0	1	0	0	0	14077	681	24	2	158	2	SDHAF2	11	61205212	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21958	61205212	73801304	12026	20177											
DAGLA	747	broad.mit.edu	37	chr11	61495731	61495731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctccggcagcggcagcGggccaagcgcaacgccgtgc	16	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61495731	T	T	61495731	3	4	9	1	0	0	0	0	1	0	0	0	4259	1116	39	1	765	1	DAGLA	11	61495731	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	290519	61495731	73510785	12027	20178											
DAGLA	747	broad.mit.edu	37	chr11	61498849	61498849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgccctggctgcctacGggtggcccatgtacctgatg	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61498849	T	T	61498849	3	4	9	1	0	0	0	0	1	0	0	0	4259	1116	39	1	940	1	DAGLA	11	61498849	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3118	61498849	73507667	12028	20179											
DAGLA	747	broad.mit.edu	37	chr11	61507057	61507057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgacctaactatagccCtctcagccagcactccactc	5	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61507057	A	A	61507057	3	1	9	1	0	0	0	0	1	0	0	0	4259	681	24	2	1839	2	DAGLA	11	61507057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8208	61507057	73499459	12029	20180											
DAGLA	747	broad.mit.edu	37	chr11	61510944	61510944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttttagccagggagctGgggttcagtcccctctccct	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61510944	T	T	61510944	1	4	9	0	1	0	0	0	0	0	0	0	4259	1363	47	2		2	DAGLA	11	61510944	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3887	61510944	73495572	12030	20181											
FEN1	2237	broad.mit.edu	37	chr11	61563076	61563076	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagaacggcatcaagccCgtgtatgtctttgatggcaa	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61563076	A	A	61563076	2	1	9	1	0	0	0	0	0	0	0	1	5869	639	23	1		1	FEN1	11	61563076	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52132	61563076	73443440	12031	20182											
RAB3IL1	5866	broad.mit.edu	37	chr11	61665794	61665794	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcttggccagtgacatctCcttccgcaacctcatgatct	8	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61665794	A	A	61665794	4	1	9	1	0	0	0	0	0	1	0	0	13045	864	30	3	47	3	RAB3IL1	11	61665794	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102718	61665794	73340722	12032	20183											
INCENP	3619	broad.mit.edu	37	chr11	61909006	61909006	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaagccttttcctgtcGgtaacctcgccccacctagc	7	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61909006	T	T	61909006	1	4	9	0	1	0	0	0	0	0	0	0	7803	1131	39	1		1	INCENP	11	61909006	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	243212	61909006	73097510	12033	20184											
INCENP	3619	broad.mit.edu	37	chr11	61909034	61909034	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccccacctagcactcaccCgctgtagccccttccctgcg	7	22	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61909034	G	G	61909034	1	3	9	0	1	0	0	0	0	0	0	0	7803	667	23	4		4	INCENP	11	61909034	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	61909034	73097482	12034	20185											
AHNAK	79026	broad.mit.edu	37	chr11	62284252	62284252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactgacagctccacctcGggaagctggatgccaacctt	10	13	0	1	rs114033696	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62284252	T	T	62284252	2	4	9	1	0	0	0	0	0	0	0	1	414	1103	39	1		1	AHNAK	11	62284252	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	375218	62284252	72722264	12035	20186			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62286385	62286385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttgatgtcaggtgcaccCaagtttgcctgcactttggg	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62286385	A	A	62286385	3	1	9	1	0	0	0	0	1	0	0	0	414	593	21	2	2288	2	AHNAK	11	62286385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2133	62286385	72720131	12036	20187			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62286838	62286838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacttacttttcttgccCttgccaccaacactaatttc	2	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62286838	A	A	62286838	3	1	9	1	0	0	0	0	1	0	0	0	414	680	24	2	2741	2	AHNAK	11	62286838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	453	62286838	72719678	12037	20188			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62287441	62287441	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctggaatatcaacgtcCaccttgggtcccgagacatc	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62287441	A	A	62287441	2	1	9	1	0	0	0	0	0	0	0	1	414	581	21	2		2	AHNAK	11	62287441	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	603	62287441	72719075	12038	20189			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62287915	62287915	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccaggcatgctgaacttGggcattttcactttgggcat	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62287915	T	T	62287915	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62287915	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	474	62287915	72718601	12039	20190			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62287987	62287987	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctgggacatcaatgtcCactttggggtccctgatgtc	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62287987	A	A	62287987	2	1	9	1	0	0	0	0	0	0	0	1	414	581	21	2		2	AHNAK	11	62287987	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	62287987	72718529	12040	20191			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62288575	62288575	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccttcaattttccttcCggaccttcaatattgacatc	5	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62288575	A	A	62288575	2	1	9	1	0	0	0	0	0	0	0	1	414	639	23	1		1	AHNAK	11	62288575	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	588	62288575	72717941	12041	20192			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62289322	62289322	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttgggcattttcactttGggcatttttaagtgccagtc	9	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62289322	T	T	62289322	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62289322	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	747	62289322	72717194	12042	20193			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62289607	62289607	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtcaatgtccactttGggtcctgagacatcaatgtc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62289607	T	T	62289607	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62289607	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	285	62289607	72716909	12043	20194			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62290118	62290118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaggtgccagtctgggcctCgaacatccacatctggggca	12	13	3	0	rs142578457		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62290118	A	A	62290118	3	1	9	1	0	0	0	0	1	0	0	0	414	884	31	3	6021	3	AHNAK	11	62290118	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	511	62290118	72716398	12044	20195			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62290402	62290402	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacatcaaggtcagccttGggcaggttcacatccacatc	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62290402	T	T	62290402	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62290402	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	284	62290402	72716114	12045	20196			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62290807	62290807	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagatcaccttccactttGggcaaagacacaaccacatc	5	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62290807	T	T	62290807	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62290807	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	405	62290807	72715709	12046	20197			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62290846	62290846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccttcattttgggtccCttcaagttcaggtcaaagtc	7	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62290846	A	A	62290846	3	1	9	1	0	0	0	0	1	0	0	0	414	680	24	2	6749	2	AHNAK	11	62290846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	62290846	72715670	12047	20198			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62290944	62290944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagctttgcatctggacCttcaatattcacgtctggaa	7	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62290944	A	A	62290944	3	1	9	1	0	0	0	0	1	0	0	0	414	681	24	2	6847	2	AHNAK	11	62290944	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	62290944	72715572	12048	20199			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62292775	62292775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacatccacatctgggccCtctcctttgaagccaggcat	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62292775	A	A	62292775	3	1	9	1	0	0	0	0	1	0	0	0	414	680	24	2	8678	2	AHNAK	11	62292775	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1831	62292775	72713741	12049	20200			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62293231	62293231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggtgccagtctggaccCtgaacattaacatctgggac	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62293231	A	A	62293231	3	1	9	1	0	0	0	0	1	0	0	0	414	680	24	2	9134	2	AHNAK	11	62293231	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	456	62293231	72713285	12050	20201			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62293723	62293723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaacatccacatcaccCttcactttgggtcctttcag	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62293723	A	A	62293723	3	1	9	1	0	0	0	0	1	0	0	0	414	680	24	2	9626	2	AHNAK	11	62293723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	492	62293723	72712793	12051	20202			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62295085	62295085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacatcaacgtcagccttGggcaagttcacatccacttc	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62295085	T	T	62295085	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62295085	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1362	62295085	72711431	12052	20203			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62295225	62295225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaatgtccactttgggccCtctgatgtcaacatctggca	8	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62295225	A	A	62295225	3	1	9	1	0	0	0	0	1	0	0	0	414	681	24	2	11128	2	AHNAK	11	62295225	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140	62295225	72711291	12053	20204			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62295544	62295544	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcaggcatggagatcttGggggccttgaagtgcatctc	13	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62295544	T	T	62295544	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62295544	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	319	62295544	72710972	12054	20205			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62295597	62295597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggggcccttcagcttccCttctggaccttcaaggctca	9	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62295597	A	A	62295597	3	1	9	1	0	0	0	0	1	0	0	0	414	681	24	2	11500	2	AHNAK	11	62295597	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	62295597	72710919	12055	20206			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62295778	62295778	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctgggccatgaacatcCacatctggggcatcaatgtc	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62295778	A	A	62295778	2	1	9	1	0	0	0	0	0	0	0	1	414	581	21	2		2	AHNAK	11	62295778	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	181	62295778	72710738	12056	20207			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62296624	62296624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctggtccctcaatatcCaaatcaggagcatcagtgtc	7	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62296624	A	A	62296624	3	1	9	1	0	0	0	0	1	0	0	0	414	593	21	2	12527	2	AHNAK	11	62296624	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	846	62296624	72709892	12057	20208			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62296894	62296894	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatatcccctttgactttGgggcctttcaagtgtaagtc	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62296894	T	T	62296894	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62296894	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	270	62296894	72709622	12058	20209			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62297016	62297016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcaatatcaatatcacCaacattcacatccatcttag	1	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62297016	A	A	62297016	3	1	9	1	0	0	0	0	1	0	0	0	414	594	21	2	12919	2	AHNAK	11	62297016	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122	62297016	72709500	12059	20210			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62298074	62298074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggttcacatccacttctCggccctctcctttgaagcca	7	16	3	1	rs115325511	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62298074	A	A	62298074	3	1	9	1	0	0	0	0	1	0	0	0	414	884	31	3	13977	3	AHNAK	11	62298074	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1058	62298074	72708442	12060	20211			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62298168	62298168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgaacctccacatctgGggcatcaatgtccattttgg	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62298168	T	T	62298168	3	4	9	1	0	0	0	0	1	0	0	0	414	1232	43	2	14071	2	AHNAK	11	62298168	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	94	62298168	72708348	12061	20212			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62298187	62298187	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcatcaatgtccattttGggtcctttgatttcaacatc	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62298187	T	T	62298187	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62298187	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	62298187	72708329	12062	20213			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62298268	62298268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacatcccctttgactttGgggcctttcaagtgtaagtc	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62298268	T	T	62298268	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62298268	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	81	62298268	72708248	12063	20214			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62299624	62299624	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccctggcacactgaatttGggcattttcatcttgggcat	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62299624	T	T	62299624	2	4	9	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62299624	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1356	62299624	72706892	12064	20215			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62299719	62299719	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgggcctttgagttctcCttccagctttggtacagtta	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62299719	A	A	62299719	4	1	9	1	0	0	0	0	0	1	0	0	414	690	24	2	15622	2	AHNAK	11	62299719	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	62299719	72706797	12065	20216			17	20		32	32	15589	N	G_C	8.957164e-09
AHNAK	79026	broad.mit.edu	37	chr11	62299840	62299840	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcaggcagcttaacatcGgggcctttaagttttccccc	8	12	1	0	rs148509197		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62299840	T	T	62299840	2	4	9	1	0	0	0	0	0	0	0	1	414	1103	39	1		1	AHNAK	11	62299840	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	121	62299840	72706676	12066	20217			17	20		32	32	15589	N	G_C	8.957164e-09
EEF1G	1937	broad.mit.edu	37	chr11	62334440	62334440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtgaacccttctctttcCgtggtgtgtcctttttaggt	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62334440	A	A	62334440	3	1	9	1	0	0	0	0	1	0	0	0	4968	652	23	1	634	1	EEF1G	11	62334440	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34600	62334440	72672076	12067	20218											
TUT1	64852	broad.mit.edu	37	chr11	62344388	62344388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccgagtacctgctttctGggtgagctgggacacagtgg	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62344388	T	T	62344388	3	4	9	1	0	0	0	0	1	0	0	0	16906	1357	47	2	1264	2	TUT1	11	62344388	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9948	62344388	72662128	12068	20219											
TUT1	64852	broad.mit.edu	37	chr11	62358974	62358974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatagcgactctcctgtacCgacaaaaacacaagcacctc	5	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62358974	A	A	62358974	3	1	9	1	0	0	0	0	1	0	0	0	16906	652	23	1	2676	1	TUT1	11	62358974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14586	62358974	72647542	12069	20220											
MTA2	9219	broad.mit.edu	37	chr11	62365169	62365169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccatcttctgctggttcCgattatcagattctcctggg	8	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62365169	A	A	62365169	3	1	9	1	0	0	0	0	1	0	0	0	10003	652	23	1	1548	1	MTA2	11	62365169	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6195	62365169	72641347	12070	20221											
MTA2	9219	broad.mit.edu	37	chr11	62365994	62365994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccccagttgtcctgtacCgtatgtgggtggctggtaat	14	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62365994	A	A	62365994	3	1	9	1	0	0	0	0	1	0	0	0	10003	666	23	1	1758	1	MTA2	11	62365994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	825	62365994	72640522	12071	20222											
MTA2	9219	broad.mit.edu	37	chr11	62366045	62366045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagaaagaaaaagttccCggtgcttcagttgatggcgc	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62366045	A	A	62366045	3	1	9	1	0	0	0	0	1	0	0	0	10003	652	23	1	1809	1	MTA2	11	62366045	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	62366045	72640471	12072	20223											
EML3	256364	broad.mit.edu	37	chr11	62375698	62375698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagccagcttcattcccCggctgcagtcccacaccgac	7	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62375698	A	A	62375698	3	1	9	1	0	0	0	0	1	0	0	0	5140	652	23	1	1561	1	EML3	11	62375698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9653	62375698	72630818	12073	20224											
EML3	256364	broad.mit.edu	37	chr11	62375742	62375742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctcattggaatcatcCaccacacaaagaaaggcacc	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62375742	A	A	62375742	2	1	9	1	0	0	0	0	0	0	0	1	5140	581	21	2		2	EML3	11	62375742	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	62375742	72630774	12074	20225											
EML3	256364	broad.mit.edu	37	chr11	62376045	62376045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccagggccccaacacccCgctcgaaggcccccagtcca	10	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62376045	A	A	62376045	3	1	9	1	0	0	0	0	1	0	0	0	5140	652	23	1	1667	1	EML3	11	62376045	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	303	62376045	72630471	12075	20226											
B3GAT3	26229	broad.mit.edu	37	chr11	62384057	62384057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgctctccaggtggcccCggggagcggtggaatcaaat	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62384057	A	A	62384057	3	1	9	1	0	0	0	0	1	0	0	0	1260	652	23	1	185	1	B3GAT3	11	62384057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8012	62384057	72622459	12076	20227											
GANAB	23193	broad.mit.edu	37	chr11	62400644	62400644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccccagcccaaggaaccCgagcccctcaccatacggct	8	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62400644	A	A	62400644	1	1	9	0	1	0	0	0	0	0	0	0	6295	667	23	1		1	GANAB	11	62400644	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16587	62400644	72605872	12077	20228											
GANAB	23193	broad.mit.edu	37	chr11	62400661	62400661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgagcccctcaccatacGgcttgctgtcagagtgagtt	10	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62400661	T	T	62400661	3	4	9	1	0	0	0	0	1	0	0	0	6295	1116	39	1	2193	1	GANAB	11	62400661	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17	62400661	72605855	12078	20229											
INTS5	80789	broad.mit.edu	37	chr11	62415086	62415086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgcaccagctgcatcGggacacacactctccaccaa	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62415086	T	T	62415086	2	4	9	1	0	0	0	0	0	0	0	1	7851	1103	39	1		1	INTS5	11	62415086	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14425	62415086	72591430	12079	20230											
INTS5	80789	broad.mit.edu	37	chr11	62416620	62416620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacattcgcaggagctccCgtcggatgctatctccgtgg	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62416620	A	A	62416620	3	1	9	1	0	0	0	0	1	0	0	0	7851	652	23	1	2131	1	INTS5	11	62416620	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1534	62416620	72589896	12080	20231											
BSCL2	26580	broad.mit.edu	37	chr11	62458045	62458045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgggatattagattaaccGggggccccacccaggtcacg	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62458045	T	T	62458045	1	4	9	0	1	0	0	0	0	0	0	0	1536	1131	39	1		1	BSCL2	11	62458045	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41425	62458045	72548471	12081	20232											
GNG3	2785	broad.mit.edu	37	chr11	62475784	62475784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatgaaaggtgagacccCggtgaacagcactatgagta	13	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62475784	A	A	62475784	3	1	9	1	0	0	0	0	1	0	0	0	6592	652	23	1	19	1	GNG3	11	62475784	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17739	62475784	72530732	12082	20233											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62482791	62482791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgatacccttggtaccCgtagtaattcctgtagtatc	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62482791	A	A	62482791	3	1	9	1	0	0	0	0	1	0	0	0	7342	652	23	1	23	1	HNRNPUL2	11	62482791	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7007	62482791	72523725	12083	20234											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62488796	62488796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaagttcctctttgtccGggaagcaatctggaccagct	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62488796	T	T	62488796	2	4	9	1	0	0	0	0	0	0	0	1	7342	1115	39	1		1	HNRNPUL2	11	62488796	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6005	62488796	72517720	12084	20235											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62489865	62489865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaattctacaatgacaaGggacaagagcacttattggc	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62489865	T	T	62489865	1	4	9	0	1	0	0	0	0	0	0	0	7342	1015	35	2		2	HNRNPUL2	11	62489865	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1069	62489865	72516651	12085	20236											
POLR2G	5436	broad.mit.edu	37	chr11	62530379	62530379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaccattgacaatattGgtgctggtgtgatccagcca	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62530379	T	T	62530379	3	4	9	1	0	0	0	0	1	0	0	0	12315	1348	47	2	173	2	POLR2G	11	62530379	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40514	62530379	72476137	12086	20237											
POLR2G	5436	broad.mit.edu	37	chr11	62532699	62532699	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatgtcttgcttcatctctCgacatgtaagtctgggcaca	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62532699	A	A	62532699	2	1	9	1	0	0	0	0	0	0	0	1	12315	876	31	3		3	POLR2G	11	62532699	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2320	62532699	72473817	12087	20238											
NXF1	10482	broad.mit.edu	37	chr11	62569499	62569499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaacgaagaactgggccCgtgtattctcatagtgaaac	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62569499	A	A	62569499	3	1	9	1	0	0	0	0	1	0	0	0	10877	652	23	1	1509	1	NXF1	11	62569499	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36800	62569499	72437017	12088	20239											
NXF1	10482	broad.mit.edu	37	chr11	62571015	62571015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatgccaagtatcacccCgacggttaggtcgggtggta	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62571015	A	A	62571015	3	1	9	1	0	0	0	0	1	0	0	0	10877	652	23	1	1745	1	NXF1	11	62571015	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1516	62571015	72435501	12089	20240											
NXF1	10482	broad.mit.edu	37	chr11	62571274	62571274	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcactcactatcgtactcGgggaccatcctgggcatcac	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62571274	T	T	62571274	2	4	9	1	0	0	0	0	0	0	0	1	10877	1124	39	1		1	NXF1	11	62571274	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	259	62571274	72435242	12090	20241											
NXF1	10482	broad.mit.edu	37	chr11	62571328	62571328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcatcttcctcaaggcGggaagaccgaataccagaac	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62571328	T	T	62571328	3	4	9	1	0	0	0	0	1	0	0	0	10877	1116	39	1	1843	1	NXF1	11	62571328	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54	62571328	72435188	12091	20242											
STX5	6811	broad.mit.edu	37	chr11	62594801	62594801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccacttctgaaagaccCcaagaacactcacagattgt	6	14	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62594801	A	A	62594801	1	1	9	0	1	0	0	0	0	0	0	0	15466	638	22	2		2	STX5	11	62594801	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23473	62594801	72411715	12092	20243											
SLC3A2	6520	broad.mit.edu	37	chr11	62655907	62655907	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggacttccacgcgttctcCgctgggcctggactcttctc	12	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62655907	A	A	62655907	2	1	9	1	0	0	0	0	0	0	0	1	14741	639	23	1		1	SLC3A2	11	62655907	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	61106	62655907	72350609	12093	20244											
SLC22A25	387601	broad.mit.edu	37	chr11	62996976	62996976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtccagtatatgaaccCagcagcgatgatcaagtatg	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62996976	A	A	62996976	3	1	9	1	0	0	0	0	1	0	0	0	14568	595	21	2	1530	2	SLC22A25	11	62996976	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	341069	62996976	72009540	12094	20245											
SLC22A10	387775	broad.mit.edu	37	chr11	63064779	63064779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgctgtttctcaggtttGggcgaagatttattctcaga	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63064779	T	T	63064779	3	4	9	1	0	0	0	0	1	0	0	0	14554	1348	47	2	521	2	SLC22A10	11	63064779	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67803	63064779	71941737	12095	20246											
SLC22A9	114571	broad.mit.edu	37	chr11	63149711	63149711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaatgctccacatgccCaacatatgtaaaaggatctc	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63149711	A	A	63149711	2	1	9	1	0	0	0	0	0	0	0	1	14575	581	21	2		2	SLC22A9	11	63149711	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84932	63149711	71856805	12096	20247											
SLC22A9	114571	broad.mit.edu	37	chr11	63174091	63174091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaactgtgttgcaccttGggcactgaaatacatgaacc	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63174091	T	T	63174091	3	4	9	1	0	0	0	0	1	0	0	0	14575	1357	47	2	1222	2	SLC22A9	11	63174091	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24380	63174091	71832425	12097	20248											
HRASLS5	117245	broad.mit.edu	37	chr11	63257750	63257750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctgttctaatgtgccCggcggaggctgcttggctgg	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63257750	A	A	63257750	2	1	9	1	0	0	0	0	0	0	0	1	7418	639	23	1		1	HRASLS5	11	63257750	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	83659	63257750	71748766	12098	20249											
RARRES3	5920	broad.mit.edu	37	chr11	63312103	63312103	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgattgcaggtgagtacccCggggctggctcctccagtgt	14	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63312103	A	A	63312103	2	1	9	1	0	0	0	0	0	0	0	1	13165	639	23	1		1	RARRES3	11	63312103	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54353	63312103	71694413	12099	20250											
RARRES3	5920	broad.mit.edu	37	chr11	63312350	63312350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgagatatggcaagtccCgctgtaaacaggtaaggacc	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63312350	A	A	63312350	3	1	9	1	0	0	0	0	1	0	0	0	13165	652	23	1	386	1	RARRES3	11	63312350	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	247	63312350	71694166	12100	20251											
ATL3	25923	broad.mit.edu	37	chr11	63396862	63396862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggcctgagtggaattacCgatatgagaagaagcctgca	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63396862	A	A	63396862	3	1	9	1	0	0	0	0	1	0	0	0	1112	652	23	1	74	1	ATL3	11	63396862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84512	63396862	71609654	12101	20252											
RTN3	10313	broad.mit.edu	37	chr11	63520598	63520598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttttaacggaatcaccCttctaattcttggtaaggtg	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63520598	A	A	63520598	3	1	9	1	0	0	0	0	1	0	0	0	13838	681	24	2	2957	2	RTN3	11	63520598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123736	63520598	71485918	12102	20253											
RTN3	10313	broad.mit.edu	37	chr11	63521158	63521158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctcattttcagtgtccCgattgtctatgagaagtaca	8	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63521158	A	A	63521158	3	1	9	1	0	0	0	0	1	0	0	0	13838	652	23	1	2998	1	RTN3	11	63521158	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	560	63521158	71485358	12103	20254											
C11orf84	144097	broad.mit.edu	37	chr11	63586034	63586034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaggaaataagaagcccCgtggtcagagatggaaggaa	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63586034	A	A	63586034	3	1	9	1	0	0	0	0	1	0	0	0	1679	652	23	1	657	1	C11orf84	11	63586034	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64876	63586034	71420482	12104	20255											
MARK2	2011	broad.mit.edu	37	chr11	63667291	63667291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcagctccttcctgccCagggccttagtctggtccac	8	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63667291	A	A	63667291	1	1	9	0	1	0	0	0	0	0	0	0	9405	609	21	2		2	MARK2	11	63667291	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	81257	63667291	71339225	12105	20256											
MARK2	2011	broad.mit.edu	37	chr11	63667550	63667550	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctatacactggtcagcGgatccctgccttttgatgga	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63667550	T	T	63667550	4	4	9	1	0	0	0	0	0	1	0	0	9405	1117	39	1	766	1	MARK2	11	63667550	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	259	63667550	71338966	12106	20257											
MARK2	2011	broad.mit.edu	37	chr11	63668064	63668064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtactgaggggaaaatacCgtattccattctacatgtcc	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63668064	A	A	63668064	3	1	9	1	0	0	0	0	1	0	0	0	9405	652	23	1	836	1	MARK2	11	63668064	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	514	63668064	71338452	12107	20258											
MARK2	2011	broad.mit.edu	37	chr11	63668166	63668166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggtgagcagtggagccCaactggcggaagggcctggg	19	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63668166	A	A	63668166	1	1	9	0	1	0	0	0	0	0	0	0	9405	609	21	2		2	MARK2	11	63668166	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	63668166	71338350	12108	20259											
MARK2	2011	broad.mit.edu	37	chr11	63668249	63668249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccttctctgtgctcccCagcaaatcatgaaagatcga	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63668249	A	A	63668249	1	1	9	0	1	0	0	0	0	0	0	0	9405	609	21	2		2	MARK2	11	63668249	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	63668249	71338267	12109	20260											
MARK2	2011	broad.mit.edu	37	chr11	63671430	63671430	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcactcacccctaacacGggcctctccgctgcttttgt	6	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63671430	T	T	63671430	1	4	9	0	1	0	0	0	0	0	0	0	9405	1131	39	1		1	MARK2	11	63671430	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3181	63671430	71335086	12110	20261											
RCOR2	283248	broad.mit.edu	37	chr11	63680133	63680133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggtcctctcttctcacCacagtttaacccaccttgaa	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63680133	A	A	63680133	1	1	9	0	1	0	0	0	0	0	0	0	13291	609	21	2		2	RCOR2	11	63680133	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8703	63680133	71326383	12111	20262											
RCOR2	283248	broad.mit.edu	37	chr11	63680184	63680184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcatctgtggtccagcGggagttgaacttggtgttgg	15	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63680184	T	T	63680184	3	4	9	1	0	0	0	0	1	0	0	0	13291	1116	39	1	592	1	RCOR2	11	63680184	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	63680184	71326332	12112	20263											
NAA40	79829	broad.mit.edu	37	chr11	63719975	63719975	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgcgtgggaaaacagctcCgtccctgttgccttttctca	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63719975	A	A	63719975	2	1	9	1	0	0	0	0	0	0	0	1	10219	639	23	1		1	NAA40	11	63719975	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	39791	63719975	71286541	12113	20264											
OTUB1	55611	broad.mit.edu	37	chr11	63764602	63764602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatgaccagagcacctcCgactaccttgtggtctacct	7	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63764602	A	A	63764602	2	1	9	1	0	0	0	0	0	0	0	1	11405	639	23	1		1	OTUB1	11	63764602	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44627	63764602	71241914	12114	20265											
MACROD1	28992	broad.mit.edu	37	chr11	63919787	63919787	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgccatctccttccatgtcGggatcttcttcagcctgaca	7	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63919787	T	T	63919787	3	4	9	1	0	0	0	0	1	0	0	0	9233	1116	39	1	636	1	MACROD1	11	63919787	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	155185	63919787	71086729	12115	20266											
MACROD1	28992	broad.mit.edu	37	chr11	63919835	63919835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaagtaatgttcctccCgctgcttgtcactcaggccc	9	14	2	1	rs151310156	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63919835	A	A	63919835	3	1	9	1	0	0	0	0	1	0	0	0	9233	652	23	1	684	1	MACROD1	11	63919835	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	63919835	71086681	12116	20267											
STIP1	10963	broad.mit.edu	37	chr11	63960670	63960670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacgtgctgtacagcaacCgttctgctgcctatgccaag	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63960670	A	A	63960670	3	1	9	1	0	0	0	0	1	0	0	0	15403	652	23	1	136	1	STIP1	11	63960670	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40835	63960670	71045846	12117	20268											
STIP1	10963	broad.mit.edu	37	chr11	63965238	63965238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttgaaggcagtgatgcGggcctttctagctgcaggtg	17	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63965238	T	T	63965238	1	4	9	0	1	0	0	0	0	0	0	0	15403	1131	39	1		1	STIP1	11	63965238	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4568	63965238	71041278	12118	20269											
STIP1	10963	broad.mit.edu	37	chr11	63965414	63965414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtctctggcagagcacCgaaccccagatgtgctcaag	10	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63965414	A	A	63965414	2	1	9	1	0	0	0	0	0	0	0	1	15403	644	23	1		1	STIP1	11	63965414	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	176	63965414	71041102	12119	20270											
STIP1	10963	broad.mit.edu	37	chr11	63967596	63967596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggccggctacacatggGggctttttgctttttaaaag	11	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63967596	T	T	63967596	1	4	9	0	1	0	0	0	0	0	0	0	15403	1247	43	2		2	STIP1	11	63967596	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2182	63967596	71038920	12120	20271											
FERMT3	83706	broad.mit.edu	37	chr11	63987723	63987723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcccgatgttaacgtctcCggccagaagttctgcattaa	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63987723	A	A	63987723	2	1	9	1	0	0	0	0	0	0	0	1	5876	639	23	1		1	FERMT3	11	63987723	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20127	63987723	71018793	12121	20272											
NUDT22	84304	broad.mit.edu	37	chr11	63994191	63994191	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccccaggagcagatacagGccgagctgagccccgcccat	12	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63994191	C	C	63994191	3	2	9	1	0	0	0	0	1	0	0	0	10834	1203	42	4	69	4	NUDT22	11	63994191	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6468	63994191	71012325	12122	20273											
PLCB3	5331	broad.mit.edu	37	chr11	64021952	64021952	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcttcttgtactggacGggccccaacatggtgagggt	14	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64021952	T	T	64021952	2	4	9	1	0	0	0	0	0	0	0	1	12124	1103	39	1		1	PLCB3	11	64021952	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27761	64021952	70984564	12123	20274											
BAD	572	broad.mit.edu	37	chr11	64051814	64051814	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggagtcttcctgctcactCggctcaaactctgggatctg	10	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64051814	A	A	64051814	2	1	9	1	0	0	0	0	0	0	0	1	1290	871	31	3		3	BAD	11	64051814	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29862	64051814	70954702	12124	20275											
PRDX5	25824	broad.mit.edu	37	chr11	64088180	64088180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaggctctgaaggccaaGggagtccaggtggtggcctg	18	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64088180	T	T	64088180	3	4	9	1	0	0	0	0	1	0	0	0	12574	991	35	2	364	2	PRDX5	11	64088180	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36366	64088180	70918336	12125	20276											
PRDX5	25824	broad.mit.edu	37	chr11	64088415	64088415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagggacatggcagtgcGgggagcagtgggggccctta	18	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64088415	T	T	64088415	1	4	9	0	1	0	0	0	0	0	0	0	12574	1131	39	1		1	PRDX5	11	64088415	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	235	64088415	70918101	12126	20277											
CCDC88B	283234	broad.mit.edu	37	chr11	64108392	64108392	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagtgcccccagctccCgagggggacctcggatgctc	12	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64108392	A	A	64108392	2	1	9	1	0	0	0	0	0	0	0	1	2892	644	23	1		1	CCDC88B	11	64108392	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19977	64108392	70898124	12127	20278											
NRXN2	9379	broad.mit.edu	37	chr11	64419601	64419601	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcattgagcttgtgcccCgcaaacagcgtttcggggcc	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64419601	A	A	64419601	2	1	9	1	0	0	0	0	0	0	0	1	10761	639	23	1		1	NRXN2	11	64419601	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	311209	64419601	70586915	12128	20279											
NRXN2	9379	broad.mit.edu	37	chr11	64453132	64453132	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacctggcgcaggtttcGggtgacccggacgtcgtgcc	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64453132	T	T	64453132	2	4	9	1	0	0	0	0	0	0	0	1	10761	1124	39	1		1	NRXN2	11	64453132	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33531	64453132	70553384	12129	20280											
PYGM	5837	broad.mit.edu	37	chr11	64517813	64517813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctccagcagccacacctGggtgtcttttgcccgtgaac	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64517813	T	T	64517813	1	4	9	0	1	0	0	0	0	0	0	0	12970	1363	47	2		2	PYGM	11	64517813	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	64681	64517813	70488703	12130	20281											
PYGM	5837	broad.mit.edu	37	chr11	64517855	64517855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacccccataccctctttGgtcaagcttatccacatcct	4	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64517855	T	T	64517855	3	4	9	1	0	0	0	0	1	0	0	0	12970	1357	47	2	374	2	PYGM	11	64517855	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42	64517855	70488661	12131	20282											
PYGM	5837	broad.mit.edu	37	chr11	64517942	64517942	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccatctccacattggcccCgtccatggtgccaatggtca	9	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64517942	A	A	64517942	3	1	9	1	0	0	0	0	1	0	0	0	12970	652	23	1	461	1	PYGM	11	64517942	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	64517942	70488574	12132	20283											
SF1	7536	broad.mit.edu	37	chr11	64537028	64537028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcacagaccctttccccCggatcataatcttggcattg	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64537028	A	A	64537028	3	1	9	1	0	0	0	0	1	0	0	0	14258	652	23	1	1556	1	SF1	11	64537028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19086	64537028	70469488	12133	20284											
SF1	7536	broad.mit.edu	37	chr11	64537899	64537899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtgggaaacagactccCgtttactattctgcaccgac	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64537899	A	A	64537899	1	1	9	0	1	0	0	0	0	0	0	0	14258	667	23	1		1	SF1	11	64537899	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	871	64537899	70468617	12134	20285											
MEN1	4221	broad.mit.edu	37	chr11	64571924	64571924	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgcagcttgatggcgctcGagttgatcttggtggccacc	14	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64571924	T	T	64571924	4	4	9	1	0	0	0	0	0	1	0	0	9565	1059	37	3	121	3	MEN1	11	64571924	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34025	64571924	70434592	12135	20286											
MEN1	4221	broad.mit.edu	37	chr11	64573228	64573228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagatctcctcgtcttccCggcagtagttgtagctgtga	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64573228	A	A	64573228	3	1	9	1	0	0	0	0	1	0	0	0	9565	652	23	1	780	1	MEN1	11	64573228	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1304	64573228	70433288	12136	20287											
CDC42BPG	55561	broad.mit.edu	37	chr11	64609241	64609241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccggggtgagcccagccCggtgtgaacacctcccccca	13	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64609241	A	A	64609241	1	1	9	0	1	0	0	0	0	0	0	0	3104	667	23	1		1	CDC42BPG	11	64609241	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36013	64609241	70397275	12137	20288											
EHD1	10938	broad.mit.edu	37	chr11	64622338	64622338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggagttcctgtgggcGggggaggaaggacaagggct	20	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64622338	T	T	64622338	1	4	9	0	1	0	0	0	0	0	0	0	5017	1131	39	1		1	EHD1	11	64622338	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13097	64622338	70384178	12138	20289											
GPHA2	170589	broad.mit.edu	37	chr11	64702444	64702444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccccagcgtccatccaccGggcccgggccctcctcacct	9	22	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64702444	T	T	64702444	1	4	9	0	1	0	0	0	0	0	0	0	6673	1131	39	1		1	GPHA2	11	64702444	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	80106	64702444	70304072	12139	20290											
C11orf85	283129	broad.mit.edu	37	chr11	64715018	64715018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagtgaagaaaactccCcatccttaaactgccaaagg	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64715018	A	A	64715018	1	1	9	0	1	0	0	0	0	0	0	0	1680	638	22	2		2	C11orf85	11	64715018	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12574	64715018	70291498	12140	20291											
ZFPL1	7542	broad.mit.edu	37	chr11	64853934	64853934	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgctgcccagctacccCgaaacacggcacctgccggc	10	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64853934	A	A	64853934	2	1	9	1	0	0	0	0	0	0	0	1	17782	644	23	1		1	ZFPL1	11	64853934	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	138916	64853934	70152582	12141	20292											
C11orf2	738	broad.mit.edu	37	chr11	64876385	64876385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaacaagccctacttccGggtacgcctcctcttgggtg	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64876385	T	T	64876385	3	4	9	1	0	0	0	0	1	0	0	0	1644	1130	39	1	1460	1	C11orf2	11	64876385	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22451	64876385	70130131	12142	20293											
TM7SF2	7108	broad.mit.edu	37	chr11	64880923	64880923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggagacggaggcagattGgggcgtctgcctgtacattc	17	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64880923	T	T	64880923	1	4	9	0	1	0	0	0	0	0	0	0	16097	1363	47	2		2	TM7SF2	11	64880923	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4538	64880923	70125593	12143	20294											
TM7SF2	7108	broad.mit.edu	37	chr11	64881005	64881005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggacgagagctcaaccCtcgtatctgtttcttcgact	9	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64881005	A	A	64881005	3	1	9	1	0	0	0	0	1	0	0	0	16097	681	24	2	560	2	TM7SF2	11	64881005	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	64881005	70125511	12144	20295											
TM7SF2	7108	broad.mit.edu	37	chr11	64881051	64881051	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttctgtgaactgcgaccCggcctcatcggctgggtatg	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64881051	A	A	64881051	2	1	9	1	0	0	0	0	0	0	0	1	16097	639	23	1		1	TM7SF2	11	64881051	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	46	64881051	70125465	12145	20296											
TM7SF2	7108	broad.mit.edu	37	chr11	64882421	64882421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggatatcacacatgacGggtttggcttcatgctggcg	12	10	2	1	rs143577587	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64882421	T	T	64882421	3	4	9	1	0	0	0	0	1	0	0	0	16097	1116	39	1	786	1	TM7SF2	11	64882421	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1370	64882421	70124095	12146	20297											
SYVN1	84447	broad.mit.edu	37	chr11	64898781	64898781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccggatggcaaagagtGggaaggtgtgcaccttgatc	17	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64898781	T	T	64898781	3	4	9	1	0	0	0	0	1	0	0	0	15606	1348	47	2	1167	2	SYVN1	11	64898781	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16360	64898781	70107735	12147	20298											
SYVN1	84447	broad.mit.edu	37	chr11	64899754	64899754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgcacagaggccccacGggtcaggatgctgtgatagg	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64899754	T	T	64899754	3	4	9	1	0	0	0	0	1	0	0	0	15606	1116	39	1	1401	1	SYVN1	11	64899754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	973	64899754	70106762	12148	20299											
SYVN1	84447	broad.mit.edu	37	chr11	64900484	64900484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgggggctgaagtcatccCgaaaaacggtgaaggccaga	15	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64900484	A	A	64900484	3	1	9	1	0	0	0	0	1	0	0	0	15606	652	23	1	1618	1	SYVN1	11	64900484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	730	64900484	70106032	12149	20300											
SPDYC	387778	broad.mit.edu	37	chr11	64938759	64938759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgatttgtgagcatcacGggggtacatgctaagtcctg	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64938759	T	T	64938759	1	4	9	0	1	0	0	0	0	0	0	0	15144	1131	39	1		1	SPDYC	11	64938759	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38275	64938759	70067757	12150	20301											
POLA2	23649	broad.mit.edu	37	chr11	65061708	65061708	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgcctttcagctactcCgatctgtctcgagaggacaa	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65061708	A	A	65061708	2	1	9	1	0	0	0	0	0	0	0	1	12283	639	23	1		1	POLA2	11	65061708	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	122949	65061708	69944808	12151	20302											
DPF2	5977	broad.mit.edu	37	chr11	65113343	65113343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaaccactccttgcatGggtgttgagtggctcaggga	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65113343	T	T	65113343	1	4	9	0	1	0	0	0	0	0	0	0	4757	1363	47	2		2	DPF2	11	65113343	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	51635	65113343	69893173	12152	20303											
DPF2	5977	broad.mit.edu	37	chr11	65113541	65113541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctcaggtactgcttccCgtgaaggctgctgctttgcc	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65113541	A	A	65113541	1	1	9	0	1	0	0	0	0	0	0	0	4757	667	23	1		1	DPF2	11	65113541	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	198	65113541	69892975	12153	20304											
TIGD3	220359	broad.mit.edu	37	chr11	65124586	65124586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaaagctgatgccctccGggccctgggcaccttgagga	12	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65124586	T	T	65124586	3	4	9	1	0	0	0	0	1	0	0	0	16020	1116	39	1	1309	1	TIGD3	11	65124586	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11045	65124586	69881930	12154	20305											
SCYL1	57410	broad.mit.edu	37	chr11	65303495	65303495	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcaccgtcccgggttgcGggtgtcctgggctttgctgc	15	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65303495	T	T	65303495	2	4	9	1	0	0	0	0	0	0	0	1	14060	1103	39	1		1	SCYL1	11	65303495	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	178909	65303495	69703021	12155	20306											
SSSCA1	10534	broad.mit.edu	37	chr11	65338413	65338413	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcgtggcttgtcaggaactCgactcagacgtggataaaga	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65338413	A	A	65338413	2	1	9	1	0	0	0	0	0	0	0	1	15313	871	31	3		3	SSSCA1	11	65338413	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34918	65338413	69668103	12156	20307											
SSSCA1	10534	broad.mit.edu	37	chr11	65338440	65338440	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtggataaagataatccCggtaagagtaaaaaataatc	9	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65338440	A	A	65338440	2	1	9	1	0	0	0	0	0	0	0	1	15313	666	23	1		1	SSSCA1	11	65338440	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	65338440	69668076	12157	20308											
EHBP1L1	254102	broad.mit.edu	37	chr11	65348034	65348034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagccacttgctgtgccCgccctgtgatgggaactcat	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65348034	A	A	65348034	1	1	9	0	1	0	0	0	0	0	0	0	5016	667	23	1		1	EHBP1L1	11	65348034	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9594	65348034	69658482	12158	20309											
KCNK7	10089	broad.mit.edu	37	chr11	65360547	65360547	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagccagttcatcctgccCtaggatgccaccttggtcct	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65360547	G	G	65360547	3	3	9	1	0	0	0	0	1	0	0	0	8141	681	24	4	74	4	KCNK7	11	65360547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12513	65360547	69645969	12159	20310											
MAP3K11	4296	broad.mit.edu	37	chr11	65380732	65380732	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcatggcgaagagccGggcctcctggcgaacgctct	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65380732	C	C	65380732	3	2	9	1	0	0	0	0	1	0	0	0	9337	1115	39	4	2087	4	MAP3K11	11	65380732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20185	65380732	69625784	12160	20311											
SIPA1	6494	broad.mit.edu	37	chr11	65417516	65417516	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattctggagtcgctgtccCgagagggtgaggccaccagg	15	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65417516	A	A	65417516	2	1	9	1	0	0	0	0	0	0	0	1	14441	644	23	1		1	SIPA1	11	65417516	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36784	65417516	69589000	12161	20312											
RELA	5970	broad.mit.edu	37	chr11	65425948	65425948	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcctcccagcctggtccCgtgaaatacacctcaatgtc	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65425948	A	A	65425948	2	1	9	1	0	0	0	0	0	0	0	1	13324	639	23	1		1	RELA	11	65425948	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8432	65425948	69580568	12162	20313											
KAT5	10524	broad.mit.edu	37	chr11	65481068	65481068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttctctctgcagaaacGgaaggtggaggtggtttcac	14	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65481068	T	T	65481068	3	4	9	1	0	0	0	0	1	0	0	0	8053	1116	39	1	563	1	KAT5	11	65481068	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	55120	65481068	69525448	12163	20314											
KAT5	10524	broad.mit.edu	37	chr11	65482120	65482120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccgtggtacttctcccCgtacccacaggaactcacca	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65482120	A	A	65482120	3	1	9	1	0	0	0	0	1	0	0	0	8053	652	23	1	871	1	KAT5	11	65482120	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1052	65482120	69524396	12164	20315											
KAT5	10524	broad.mit.edu	37	chr11	65482182	65482182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagttctgcctcaagtacGgccgtagtctcaagtgtctt	11	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65482182	T	T	65482182	3	4	9	1	0	0	0	0	1	0	0	0	8053	1116	39	1	933	1	KAT5	11	65482182	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62	65482182	69524334	12165	20316											
KAT5	10524	broad.mit.edu	37	chr11	65484374	65484374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggagaaagaatcaacGgaagactacaatgtggcctg	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65484374	T	T	65484374	2	4	9	1	0	0	0	0	0	0	0	1	8053	1103	39	1		1	KAT5	11	65484374	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2192	65484374	69522142	12166	20317											
MUS81	80198	broad.mit.edu	37	chr11	65630618	65630618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgctgaatgtgggcatcGggcccaaggagccccctggg	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65630618	T	T	65630618	3	4	9	1	0	0	0	0	1	0	0	0	10082	1116	39	1	714	1	MUS81	11	65630618	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	146244	65630618	69375898	12167	20318											
EFEMP2	30008	broad.mit.edu	37	chr11	65637348	65637348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcaggagaagccatccCgatgcagctcatagccctgg	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65637348	A	A	65637348	3	1	9	1	0	0	0	0	1	0	0	0	4982	652	23	1	644	1	EFEMP2	11	65637348	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6730	65637348	69369168	12168	20319											
EFEMP2	30008	broad.mit.edu	37	chr11	65638705	65638705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgggaggcactggtggcGggggtccctcgccgtgtagg	21	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65638705	T	T	65638705	3	4	9	1	0	0	0	0	1	0	0	0	4982	1116	39	1	1073	1	EFEMP2	11	65638705	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1357	65638705	69367811	12169	20320											
CTSW	1521	broad.mit.edu	37	chr11	65649027	65649027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctcgtaggtggtggttGggaagcgatctccccaggga	17	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65649027	T	T	65649027	1	4	9	0	1	0	0	0	0	0	0	0	4076	1363	47	2		2	CTSW	11	65649027	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10322	65649027	69357489	12170	20321											
FIBP	9158	broad.mit.edu	37	chr11	65653877	65653877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctaccaccttgaagaccCgtttaaagttgtcaaactgc	6	13	2	2	rs2231889		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65653877	A	A	65653877	3	1	9	1	0	0	0	0	1	0	0	0	5943	652	23	1	694	1	FIBP	11	65653877	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4850	65653877	69352639	12171	20322											
FIBP	9158	broad.mit.edu	37	chr11	65655168	65655168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttgcccagcacctccCgaacaaaggcctcatcaaag	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65655168	A	A	65655168	3	1	9	1	0	0	0	0	1	0	0	0	5943	652	23	1	812	1	FIBP	11	65655168	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1291	65655168	69351348	12172	20323											
C11orf68	83638	broad.mit.edu	37	chr11	65685122	65685122	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcacggatggctgaatcCgcctccagtacacccaagcg	11	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65685122	A	A	65685122	2	1	9	1	0	0	0	0	0	0	0	1	1670	639	23	1		1	C11orf68	11	65685122	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29954	65685122	69321394	12173	20324											
DRAP1	10589	broad.mit.edu	37	chr11	65687877	65687877	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctggtggcatctgttccCgacatgcagggggacgggga	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65687877	A	A	65687877	2	1	9	1	0	0	0	0	0	0	0	1	4795	639	23	1		1	DRAP1	11	65687877	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2755	65687877	69318639	12174	20325											
SART1	9092	broad.mit.edu	37	chr11	65734797	65734797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaggaggtagtagtgcGggcagatgacttgctgcctc	17	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65734797	T	T	65734797	3	4	9	1	0	0	0	0	1	0	0	0	13958	1116	39	1	1294	1	SART1	11	65734797	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46920	65734797	69271719	12175	20326											
EIF1AD	84285	broad.mit.edu	37	chr11	65766799	65766799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttattttccatgtacccCaccccaaggcttgttcctca	4	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65766799	A	A	65766799	1	1	9	0	1	0	0	0	0	0	0	0	5031	609	21	2		2	EIF1AD	11	65766799	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32002	65766799	69239717	12176	20327											
SF3B2	10992	broad.mit.edu	37	chr11	65820563	65820563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaagccgctccacctccCatgtcggcacaggtagggag	12	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65820563	A	A	65820563	2	1	9	1	0	0	0	0	0	0	0	1	14264	581	21	2		2	SF3B2	11	65820563	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53764	65820563	69185953	12177	20328											
SF3B2	10992	broad.mit.edu	37	chr11	65822677	65822677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccaaatttggggccccCgcctcctctccgtgtgggtg	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65822677	A	A	65822677	3	1	9	1	0	0	0	0	1	0	0	0	14264	652	23	1	403	1	SF3B2	11	65822677	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2114	65822677	69183839	12178	20329											
PACS1	55690	broad.mit.edu	37	chr11	65984128	65984128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgtccaagaagctcctgGggtttcccaccctcattctg	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65984128	T	T	65984128	1	4	9	0	1	0	0	0	0	0	0	0	11466	1247	43	2		2	PACS1	11	65984128	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	161451	65984128	69022388	12179	20330											
KLC2	64837	broad.mit.edu	37	chr11	66032568	66032568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtggggcaggctgggcGgttgtcaggggaggctggga	22	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66032568	T	T	66032568	1	4	9	0	1	0	0	0	0	0	0	0	8405	1131	39	1		1	KLC2	11	66032568	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	48440	66032568	68973948	12180	20331											
YIF1A	10897	broad.mit.edu	37	chr11	66052415	66052415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgctgccgaacagcagccCcgtgagcacactgaggatca	11	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66052415	A	A	66052415	3	1	9	1	0	0	0	0	1	0	0	0	17602	623	22	2	225	2	YIF1A	11	66052415	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19847	66052415	68954101	12181	20332											
YIF1A	10897	broad.mit.edu	37	chr11	66055237	66055237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtctgggggccagactcGggcagaatgaggaaggccca	18	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66055237	T	T	66055237	1	4	9	0	1	0	0	0	0	0	0	0	17602	1131	39	1		1	YIF1A	11	66055237	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2822	66055237	68951279	12182	20333											
CD248	57124	broad.mit.edu	37	chr11	66083385	66083385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcttcctcatcctcccCgtcatccagcaactcatctc	2	19	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66083385	A	A	66083385	3	1	9	1	0	0	0	0	1	0	0	0	3019	652	23	1	1163	1	CD248	11	66083385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28148	66083385	68923131	12183	20334											
RIN1	9610	broad.mit.edu	37	chr11	66099721	66099721	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcagggtctcccgcccCgaatgacccttctggccact	10	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66099721	A	A	66099721	1	1	9	0	1	0	0	0	0	0	0	0	13482	667	23	1		1	RIN1	11	66099721	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	16336	66099721	68906795	12184	20335											
NPAS4	266743	broad.mit.edu	37	chr11	66192488	66192488	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttcctggaagagacgccCgtggaagacatcttcatgga	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66192488	A	A	66192488	2	1	9	1	0	0	0	0	0	0	0	1	10660	639	23	1		1	NPAS4	11	66192488	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92767	66192488	68814028	12185	20336											
PELI3	246330	broad.mit.edu	37	chr11	66238701	66238701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccccttcttcttaaccccCgacatctacagctacaatgg	4	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66238701	A	A	66238701	1	1	9	0	1	0	0	0	0	0	0	0	11817	667	23	1		1	PELI3	11	66238701	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46213	66238701	68767815	12186	20337											
PELI3	246330	broad.mit.edu	37	chr11	66238792	66238792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgccggtcgcacgccaacGgggtgaagccagacgtcatg	15	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66238792	T	T	66238792	3	4	9	1	0	0	0	0	1	0	0	0	11817	1116	39	1	314	1	PELI3	11	66238792	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	66238792	68767724	12187	20338											
PELI3	246330	broad.mit.edu	37	chr11	66239885	66239885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctcgtatacactgtccCggagccactcggtcatagtg	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66239885	A	A	66239885	2	1	9	1	0	0	0	0	0	0	0	1	11817	643	23	1		1	PELI3	11	66239885	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1093	66239885	68766631	12188	20339											
DPP3	10072	broad.mit.edu	37	chr11	66253988	66253988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgggtggtgtgactgggcCattggcctccctttccttgc	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66253988	A	A	66253988	1	1	9	0	1	0	0	0	0	0	0	0	4768	609	21	2		2	DPP3	11	66253988	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14103	66253988	68752528	12189	20340											
DPP3	10072	broad.mit.edu	37	chr11	66259176	66259176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcccccagttacatcGggttcatcgagagctaccgc	8	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66259176	T	T	66259176	3	4	9	1	0	0	0	0	1	0	0	0	4768	1116	39	1	967	1	DPP3	11	66259176	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5188	66259176	68747340	12190	20341											
DPP3	10072	broad.mit.edu	37	chr11	66259240	66259240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgaaggtaacttcctcaGggaggaggtcagtcacagtc	12	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66259240	T	T	66259240	1	4	9	0	1	0	0	0	0	0	0	0	4768	1015	35	2		2	DPP3	11	66259240	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	64	66259240	68747276	12191	20342											
BBS1	582	broad.mit.edu	37	chr11	66288761	66288761	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagccttcccagcgtcccCgtcttcctagaggtttctgg	10	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66288761	A	A	66288761	2	1	9	1	0	0	0	0	0	0	0	1	1340	639	23	1		1	BBS1	11	66288761	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29521	66288761	68717755	12192	20343											
ACTN3	89	broad.mit.edu	37	chr11	66330357	66330357	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcatagacttcatgaccCgagagacagccgagactgac	9	13	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66330357	A	A	66330357	2	1	9	1	0	0	0	0	0	0	0	1	206	644	23	1		1	ACTN3	11	66330357	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41596	66330357	68676159	12193	20344											
CTSF	8722	broad.mit.edu	37	chr11	66333129	66333129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggttgcccctcctgacccCattaatgcatacccaaattc	5	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66333129	A	A	66333129	1	1	9	0	1	0	0	0	0	0	0	0	4068	609	21	2		2	CTSF	11	66333129	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2772	66333129	68673387	12194	20345											
CCDC87	55231	broad.mit.edu	37	chr11	66358101	66358101	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccttgaagatcactggctCgccaaagattaactctatct	6	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66358101	A	A	66358101	4	1	9	1	0	0	0	0	0	1	0	0	2890	893	31	3	167	3	CCDC87	11	66358101	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24972	66358101	68648415	12195	20346											
SPTBN2	6712	broad.mit.edu	37	chr11	66463961	66463961	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggtctctcagcttctcCgacaccagggctttcagctc	9	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66463961	A	A	66463961	2	1	9	1	0	0	0	0	0	0	0	1	15238	639	23	1		1	SPTBN2	11	66463961	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105860	66463961	68542555	12196	20347											
SPTBN2	6712	broad.mit.edu	37	chr11	66464004	66464004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttctcaagggtgagctctCgcccttcctggaaggcagga	13	12	2	1	rs149992317		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66464004	A	A	66464004	3	1	9	1	0	0	0	0	1	0	0	0	15238	884	31	3	3222	3	SPTBN2	11	66464004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	66464004	68542512	12197	20348											
SPTBN2	6712	broad.mit.edu	37	chr11	66467974	66467974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctcttcctcctgcttGggactttgccctggactttc	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66467974	T	T	66467974	1	4	9	0	1	0	0	0	0	0	0	0	15238	1363	47	2		2	SPTBN2	11	66467974	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3970	66467974	68538542	12198	20349											
KDM2A	22992	broad.mit.edu	37	chr11	66983406	66983406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtttggtatcacatcCatcaagggggaaaggtatgg	12	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66983406	A	A	66983406	3	1	9	1	0	0	0	0	1	0	0	0	8194	594	21	2	699	2	KDM2A	11	66983406	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	515432	66983406	68023110	12199	20350											
KDM2A	22992	broad.mit.edu	37	chr11	67012688	67012688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccactcggccaaaggtgcGggttcctaccatccccatta	8	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67012688	T	T	67012688	3	4	9	1	0	0	0	0	1	0	0	0	8194	1116	39	1	1642	1	KDM2A	11	67012688	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29282	67012688	67993828	12200	20351											
ADRBK1	156	broad.mit.edu	37	chr11	67047340	67047340	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagatttgtcaaaacctcCgaggggacgtgttccagaaa	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67047340	A	A	67047340	2	1	9	1	0	0	0	0	0	0	0	1	343	644	23	1		1	ADRBK1	11	67047340	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34652	67047340	67959176	12201	20352											
ADRBK1	156	broad.mit.edu	37	chr11	67048185	67048185	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgagtggcccctgagccCtgattcttcttttccagcga	9	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67048185	A	A	67048185	1	1	9	0	1	0	0	0	0	0	0	0	343	696	24	2		2	ADRBK1	11	67048185	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	845	67048185	67958331	12202	20353											
RAD9A	5883	broad.mit.edu	37	chr11	67163737	67163737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctcccctgcccaggccCgccatcttcaccatcaagga	6	22	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67163737	A	A	67163737	2	1	9	1	0	0	0	0	0	0	0	1	13103	639	23	1		1	RAD9A	11	67163737	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	115552	67163737	67842779	12203	20354											
CARNS1	57571	broad.mit.edu	37	chr11	67191717	67191717	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggagctctatggtgttgAcctgctgctggctgctgtta	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67191717	T	T	67191717	3	4	9	1	0	0	0	0	1	0	0	0	2682	275	10	5	2532	5	CARNS1	11	67191717	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	27980	67191717	67814799	12204	20355											
AIP	9049	broad.mit.edu	37	chr11	67250655	67250655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatatcatcgcaagactccGggaggacgggatccaaaaac	12	10	1	1	rs139459091		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67250655	T	T	67250655	3	4	9	1	0	0	0	0	1	0	0	0	435	1116	39	1	28	1	AIP	11	67250655	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58938	67250655	67755861	12205	20356											
NDUFV1	4723	broad.mit.edu	37	chr11	67376086	67376086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcctgctgaaggggccCgactggatcctgggcgagat	16	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67376086	A	A	67376086	2	1	9	1	0	0	0	0	0	0	0	1	10394	639	23	1		1	NDUFV1	11	67376086	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	125431	67376086	67630430	12206	20357											
NDUFV1	4723	broad.mit.edu	37	chr11	67376149	67376149	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggaggcgctggcttcccCactggcctcaagtggagctt	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67376149	A	A	67376149	2	1	9	1	0	0	0	0	0	0	0	1	10394	581	21	2		2	NDUFV1	11	67376149	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63	67376149	67630367	12207	20358											
NDUFV1	4723	broad.mit.edu	37	chr11	67377050	67377050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccgggccatgggcgccCgcgctgcctatatctacatc	14	15	1	0	rs151144350		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67377050	A	A	67377050	3	1	9	1	0	0	0	0	1	0	0	0	10394	652	23	1	468	1	NDUFV1	11	67377050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	901	67377050	67629466	12208	20359											
ACY3	91703	broad.mit.edu	37	chr11	67412587	67412587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgagaaaatgtcagccCgcagcacaccctgtggctgg	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67412587	A	A	67412587	3	1	9	1	0	0	0	0	1	0	0	0	227	652	23	1	408	1	ACY3	11	67412587	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35537	67412587	67593929	12209	20360											
ACY3	91703	broad.mit.edu	37	chr11	67413315	67413315	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagctggttcagctctcGggctcttgtcacctcatatg	10	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67413315	T	T	67413315	2	4	9	1	0	0	0	0	0	0	0	1	227	1124	39	1		1	ACY3	11	67413315	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	728	67413315	67593201	12210	20361											
ALDH3B2	222	broad.mit.edu	37	chr11	67433029	67433029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgcggttggccacggtctGggggtcgcagttgtcgtcca	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67433029	T	T	67433029	3	4	9	1	0	0	0	0	1	0	0	0	500	1357	47	2	740	2	ALDH3B2	11	67433029	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19714	67433029	67573487	12211	20362											
ALDH3B2	222	broad.mit.edu	37	chr11	67450272	67450272	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaacagctgccctcttGggtttaggtgttgttccttc	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67450272	T	T	67450272	1	4	9	0	1	0	0	0	0	0	0	0	500	1363	47	2		2	ALDH3B2	11	67450272	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	17243	67450272	67556244	12212	20363											
TCIRG1	10312	broad.mit.edu	37	chr11	67815245	67815245	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgggctggagtgtggcCgccatggccaaccagtctgg	15	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67815245	A	A	67815245	2	1	9	1	0	0	0	0	0	0	0	1	15825	639	23	1		1	TCIRG1	11	67815245	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	364973	67815245	67191271	12213	20364											
SUV420H1	51111	broad.mit.edu	37	chr11	67926094	67926094	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctgttcaccactgtcGgggcaaggttccgtcacact	11	13	2	0	rs139658126		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67926094	T	T	67926094	2	4	9	1	0	0	0	0	0	0	0	1	15532	1103	39	1		1	SUV420H1	11	67926094	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	110849	67926094	67080422	12214	20365											
SUV420H1	51111	broad.mit.edu	37	chr11	67957439	67957439	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcagggtgtccttcccCgtgtgctgtaattttgattg	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67957439	A	A	67957439	2	1	9	1	0	0	0	0	0	0	0	1	15532	639	23	1		1	SUV420H1	11	67957439	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31345	67957439	67049077	12215	20366											
LRP5	4041	broad.mit.edu	37	chr11	68201158	68201158	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcgctgtgacggctttccCgagtgcgatgaccagagcga	15	11	0	3	rs144115017	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68201158	A	A	68201158	2	1	9	1	0	0	0	0	0	0	0	1	9047	639	23	1		1	LRP5	11	68201158	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	243719	68201158	66805358	12216	20367											
GAL	51083	broad.mit.edu	37	chr11	68452457	68452457	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccctttctgcctctgcGgggctctggtcgccggtaag	15	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68452457	T	T	68452457	2	4	9	1	0	0	0	0	0	0	0	1	6258	1103	39	1		1	GAL	11	68452457	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	251299	68452457	66554059	12217	20368											
MTL5	9633	broad.mit.edu	37	chr11	68480803	68480803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaccctttgttgtgctGgggcttgacattgcccaatt	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68480803	T	T	68480803	3	4	9	1	0	0	0	0	1	0	0	0	10030	1357	47	2	445	2	MTL5	11	68480803	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28346	68480803	66525713	12218	20369											
CPT1A	1374	broad.mit.edu	37	chr11	68528981	68528981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctagccaatacaactgacGgaagaagtggaagagactta	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68528981	T	T	68528981	1	4	9	0	1	0	0	0	0	0	0	0	3863	1131	39	1		1	CPT1A	11	68528981	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	48178	68528981	66477535	12219	20370											
CPT1A	1374	broad.mit.edu	37	chr11	68549296	68549296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtccattgacgtatccGggtcttcacttctgtatcct	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68549296	T	T	68549296	3	4	9	1	0	0	0	0	1	0	0	0	3863	1116	39	1	1102	1	CPT1A	11	68549296	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20315	68549296	66457220	12220	20371											
CPT1A	1374	broad.mit.edu	37	chr11	68562273	68562273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaatttgtttgcctactGgtttgatttcctcccggtcc	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68562273	T	T	68562273	3	4	9	1	0	0	0	0	1	0	0	0	3863	1362	47	2	1531	2	CPT1A	11	68562273	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12977	68562273	66444243	12221	20372											
MRPL21	219927	broad.mit.edu	37	chr11	68658900	68658900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggcttgaccacagaccCtgactgttgtcatcagttac	8	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68658900	A	A	68658900	1	1	9	0	1	0	0	0	0	0	0	0	9881	696	24	2		2	MRPL21	11	68658900	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96627	68658900	66347616	12222	20373											
MRPL21	219927	broad.mit.edu	37	chr11	68664112	68664112	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcctgccatactgcccCgtgacgatcatctcattcac	7	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68664112	A	A	68664112	2	1	9	1	0	0	0	0	0	0	0	1	9881	639	23	1		1	MRPL21	11	68664112	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5212	68664112	66342404	12223	20374											
MRPL21	219927	broad.mit.edu	37	chr11	68668017	68668017	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacattttgatattaccCtggtagatatgaagtgctct	7	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68668017	A	A	68668017	4	1	9	1	0	0	0	0	0	1	0	0	9881	695	24	2	496	2	MRPL21	11	68668017	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3905	68668017	66338499	12224	20375											
IGHMBP2	3508	broad.mit.edu	37	chr11	68703791	68703791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggtcatctgtgactccCgtactgtcaacaaccatgca	9	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68703791	A	A	68703791	3	1	9	1	0	0	0	0	1	0	0	0	7661	652	23	1	1893	1	IGHMBP2	11	68703791	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35774	68703791	66302725	12225	20376											
TPCN2	219931	broad.mit.edu	37	chr11	68830359	68830359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctcttccagcccctgcGgatccgccggcttctccgtc	11	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68830359	T	T	68830359	3	4	9	1	0	0	0	0	1	0	0	0	16520	1116	39	1	576	1	TPCN2	11	68830359	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126568	68830359	66176157	12226	20377											
FGF4	2249	broad.mit.edu	37	chr11	69588173	69588173	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggcgatgaacatgccGgggtacttgtaggactcgta	14	9	1	1	rs143738659	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69588173	T	T	69588173	2	4	9	1	0	0	0	0	0	0	0	1	5911	1103	39	1		1	FGF4	11	69588173	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	757814	69588173	65418343	12227	20378											
FGF3	2248	broad.mit.edu	37	chr11	69631175	69631175	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatgcccacctccactgcCgttatctccaaaatacctag	4	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69631175	A	A	69631175	2	1	9	1	0	0	0	0	0	0	0	1	5910	639	23	1		1	FGF3	11	69631175	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43002	69631175	65375341	12228	20379											
PPFIA1	8500	broad.mit.edu	37	chr11	70118227	70118227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaaagttgcatatttgtGggaacctgtattctgagctt	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70118227	T	T	70118227	1	4	9	0	1	0	0	0	0	0	0	0	12405	1363	47	2		2	PPFIA1	11	70118227	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	487052	70118227	64888289	12229	20380											
PPFIA1	8500	broad.mit.edu	37	chr11	70170838	70170838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaatttgtttttctgcGgaattgaagggacttcattt	11	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70170838	T	T	70170838	1	4	9	0	1	0	0	0	0	0	0	0	12405	1131	39	1		1	PPFIA1	11	70170838	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52611	70170838	64835678	12230	20381											
PPFIA1	8500	broad.mit.edu	37	chr11	70170876	70170876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagtatgagactgtaaaGgagttatttgccccagattc	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70170876	T	T	70170876	1	4	9	0	1	0	0	0	0	0	0	0	12405	1015	35	2		2	PPFIA1	11	70170876	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	70170876	64835640	12231	20382											
PPFIA1	8500	broad.mit.edu	37	chr11	70171012	70171012	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcggtctcttaggatgacCgtggtgaagagacaagcgca	15	8	1	3	rs144282210	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70171012	A	A	70171012	2	1	9	1	0	0	0	0	0	0	0	1	12405	639	23	1		1	PPFIA1	11	70171012	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	136	70171012	64835504	12232	20383											
PPFIA1	8500	broad.mit.edu	37	chr11	70201822	70201822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactcgctccacaaagcccCaaagaagaaaggcattaagt	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70201822	A	A	70201822	3	1	9	1	0	0	0	0	1	0	0	0	12405	594	21	2	2459	2	PPFIA1	11	70201822	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30810	70201822	64804694	12233	20384											
PPFIA1	8500	broad.mit.edu	37	chr11	70208223	70208223	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaattgctggaggaagccCggagacaaggtttacctttt	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70208223	A	A	70208223	2	1	9	1	0	0	0	0	0	0	0	1	12405	643	23	1		1	PPFIA1	11	70208223	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6401	70208223	64798293	12234	20385											
CTTN	2017	broad.mit.edu	37	chr11	70256055	70256055	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttggtgtggaacaagacCgaatggataaggtaagtggc	14	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70256055	A	A	70256055	2	1	9	1	0	0	0	0	0	0	0	1	4078	644	23	1		1	CTTN	11	70256055	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47832	70256055	64750461	12235	20386											
CTTN	2017	broad.mit.edu	37	chr11	70261817	70261817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactgagaagcatgcctccCagaaaggtaagacgcgaaag	12	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70261817	A	A	70261817	3	1	9	1	0	0	0	0	1	0	0	0	4078	595	21	2	469	2	CTTN	11	70261817	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5762	70261817	64744699	12236	20387											
CTTN	2017	broad.mit.edu	37	chr11	70267616	70267616	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaattcggtgttcagtcGgagaggcaggactccgctgc	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70267616	T	T	70267616	2	4	9	1	0	0	0	0	0	0	0	1	4078	1103	39	1		1	CTTN	11	70267616	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5799	70267616	64738900	12237	20388											
CTTN	2017	broad.mit.edu	37	chr11	70267719	70267719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcctcctaccctcccccCgaccctcctgtgcggccact	6	24	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70267719	A	A	70267719	1	1	9	0	1	0	0	0	0	0	0	0	4078	667	23	1		1	CTTN	11	70267719	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	70267719	64738797	12238	20389											
CTTN	2017	broad.mit.edu	37	chr11	70277437	70277437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgacttactgccagagccCaggtcctgtttgtggagtgg	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70277437	A	A	70277437	1	1	9	0	1	0	0	0	0	0	0	0	4078	609	21	2		2	CTTN	11	70277437	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9718	70277437	64729079	12239	20390											
CTTN	2017	broad.mit.edu	37	chr11	70282488	70282488	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcacgtggaaatgtctcGggacttgggtcccggagtgc	16	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70282488	T	T	70282488	1	4	9	0	1	0	0	0	0	0	0	0	4078	1116	39	1		1	CTTN	11	70282488	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	5051	70282488	64724028	12240	20391											
SHANK2	22941	broad.mit.edu	37	chr11	70319024	70319024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctatgttcattctgtgccCgactcgagttaccccaagat	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70319024	A	A	70319024	3	1	9	1	0	0	0	0	1	0	0	0	14378	652	23	1	53	1	SHANK2	11	70319024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36536	70319024	64687492	12241	20392											
SHANK2	22941	broad.mit.edu	37	chr11	70331792	70331792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaccataaatgcttgccCatctgcatagactgtgcagg	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70331792	A	A	70331792	3	1	9	1	0	0	0	0	1	0	0	0	14378	594	21	2	951	2	SHANK2	11	70331792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12768	70331792	64674724	12242	20393											
SHANK2	22941	broad.mit.edu	37	chr11	70332367	70332367	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttctggcacctcggacggcGagctgtctggcttcatctcc	11	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70332367	T	T	70332367	4	4	9	1	0	0	0	0	0	1	0	0	14378	1059	37	3	1526	3	SHANK2	11	70332367	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	575	70332367	64674149	12243	20394											
SHANK2	22941	broad.mit.edu	37	chr11	70332564	70332564	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtctcgtacttgttctcCgtctcctgccgcctcagggg	11	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70332564	A	A	70332564	2	1	9	1	0	0	0	0	0	0	0	1	14378	639	23	1		1	SHANK2	11	70332564	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	197	70332564	64673952	12244	20395											
SHANK2	22941	broad.mit.edu	37	chr11	70333421	70333421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttgctggcgatcttccCcacctctgagtatgggtttt	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70333421	A	A	70333421	3	1	9	1	0	0	0	0	1	0	0	0	14378	623	22	2	2580	2	SHANK2	11	70333421	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	857	70333421	64673095	12245	20396											
SHANK2	22941	broad.mit.edu	37	chr11	70333484	70333484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaagttggcttgcgggcCggcattccgactgtagaggt	17	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70333484	A	A	70333484	3	1	9	1	0	0	0	0	1	0	0	0	14378	652	23	1	2643	1	SHANK2	11	70333484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63	70333484	64673032	12246	20397											
SHANK2	22941	broad.mit.edu	37	chr11	70507759	70507759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttttctgcaggaccacCgtcttctcctcaataatgca	5	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70507759	A	A	70507759	2	1	9	1	0	0	0	0	0	0	0	1	14378	639	23	1		1	SHANK2	11	70507759	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	174275	70507759	64498757	12247	20398											
KRTAP5-7	440050	broad.mit.edu	37	chr11	71238367	71238367	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggctgctgtggctgttcCgaaggctgtggctccggctg	17	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71238367	A	A	71238367	2	1	9	1	0	0	0	0	0	0	0	1	8638	639	23	1		1	KRTAP5-7	11	71238367	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	730608	71238367	63768149	12248	20399											
KRTAP5-7	440050	broad.mit.edu	37	chr11	71238460	71238460	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccagctgctgtgtgccCgtctgctgctgcaagcccgt	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71238460	A	A	71238460	2	1	9	1	0	0	0	0	0	0	0	1	8638	639	23	1		1	KRTAP5-7	11	71238460	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	71238460	63768056	12249	20400											
KRTAP5-7	440050	broad.mit.edu	37	chr11	71238478	71238478	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtctgctgctgcaagccCgtgtgctgctgtgtgccagc	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71238478	A	A	71238478	2	1	9	1	0	0	0	0	0	0	0	1	8638	639	23	1		1	KRTAP5-7	11	71238478	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	71238478	63768038	12250	20401											
KRTAP5-9	3846	broad.mit.edu	37	chr11	71259817	71259817	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccagctgctgtgcaccCgtctactgctgcaagcccgt	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71259817	A	A	71259817	2	1	9	1	0	0	0	0	0	0	0	1	8640	639	23	1		1	KRTAP5-9	11	71259817	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21339	71259817	63746699	12251	20402											
KRTAP5-9	3846	broad.mit.edu	37	chr11	71259882	71259882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctagctgtggcaagcGgggctgtggctcctgtgggg	18	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71259882	T	T	71259882	3	4	9	1	0	0	0	0	1	0	0	0	8640	1116	39	1	181	1	KRTAP5-9	11	71259882	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65	71259882	63746634	12252	20403											
KRTAP5-9	3846	broad.mit.edu	37	chr11	71260060	71260060	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccctgttgctcctcctcGggtcgtgggtcatcctgctg	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71260060	T	T	71260060	2	4	9	1	0	0	0	0	0	0	0	1	8640	1103	39	1		1	KRTAP5-9	11	71260060	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	178	71260060	63746456	12253	20404											
DEFB108B	245911	broad.mit.edu	37	chr11	71548493	71548493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtccaaatggctcctgtcGggacttttgccttgaaacag	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71548493	T	T	71548493	3	4	9	1	0	0	0	0	1	0	0	0	4438	1116	39	1	113	1	DEFB108B	11	71548493	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	288433	71548493	63458023	12254	20405											
DEFB108B	245911	broad.mit.edu	37	chr11	71548525	71548525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaacagaaatccatgttGggagatgtttaaatagccaa	9	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71548525	T	T	71548525	3	4	9	1	0	0	0	0	1	0	0	0	4438	1348	47	2	145	2	DEFB108B	11	71548525	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	71548525	63457991	12255	20406											
RNF121	55298	broad.mit.edu	37	chr11	71701717	71701717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactatggagttctggaacGggactttgcagaaatgtgtg	13	6	1	1	rs118134741	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71701717	T	T	71701717	3	4	9	1	0	0	0	0	1	0	0	0	13542	1116	39	1	603	1	RNF121	11	71701717	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	153192	71701717	63304799	12256	20407											
RNF121	55298	broad.mit.edu	37	chr11	71701775	71701775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accataggggtaagttcatcCgggttcttaaatactgcttc	9	9	2	0	rs148968024	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71701775	A	A	71701775	1	1	9	0	1	0	0	0	0	0	0	0	13542	667	23	1		1	RNF121	11	71701775	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	71701775	63304741	12257	20408											
NUMA1	4926	broad.mit.edu	37	chr11	71726404	71726404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctcttcaaggctgccCttggtgaccttcaaggactc	8	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71726404	A	A	71726404	3	1	9	1	0	0	0	0	1	0	0	0	10845	680	24	2	4254	2	NUMA1	11	71726404	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24629	71726404	63280112	12258	20409											
NUMA1	4926	broad.mit.edu	37	chr11	71733410	71733410	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttatattcaaactgttccCagtccctgggacttttggag	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71733410	G	G	71733410	3	3	9	1	0	0	0	0	1	0	0	0	10845	595	21	4	6084	4	NUMA1	11	71733410	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7006	71733410	63273106	12259	20410											
INPPL1	3636	broad.mit.edu	37	chr11	71940585	71940585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctcgcccatggtgaccCgccttttgcagcagcaggta	12	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71940585	A	A	71940585	3	1	9	1	0	0	0	0	1	0	0	0	7831	652	23	1	758	1	INPPL1	11	71940585	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	207175	71940585	63065931	12260	20411											
INPPL1	3636	broad.mit.edu	37	chr11	71942228	71942228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttacggatctggattacCgcccggtgagggggggtcat	16	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71942228	A	A	71942228	3	1	9	1	0	0	0	0	1	0	0	0	7831	652	23	1	1538	1	INPPL1	11	71942228	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1643	71942228	63064288	12261	20412											
CLPB	81570	broad.mit.edu	37	chr11	72012925	72012925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagagcaccacagcattGgggcactgcttcaacttctt	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72012925	T	T	72012925	2	4	9	1	0	0	0	0	0	0	0	1	3583	1335	47	2		2	CLPB	11	72012925	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70697	72012925	62993591	12262	20413											
CLPB	81570	broad.mit.edu	37	chr11	72145223	72145223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttccagctgtcctgtcctGggagtgtttcttcgggacca	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72145223	T	T	72145223	3	4	9	1	0	0	0	0	1	0	0	0	3583	1348	47	2	1895	2	CLPB	11	72145223	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	132298	72145223	62861293	12263	20414											
PDE2A	5138	broad.mit.edu	37	chr11	72289410	72289410	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatcgagtcgtcaggcctgTccctctcattcctccatcgg	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72289410	A	A	72289410	1	1	9	0	1	0	0	0	0	0	0	0	11730	1682	58	5		5	PDE2A	11	72289410	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	144187	72289410	62717106	12264	20415											
PDE2A	5138	broad.mit.edu	37	chr11	72290399	72290399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggccaagatgatgtccCgcatcagatccagcatgcgc	11	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72290399	A	A	72290399	3	1	9	1	0	0	0	0	1	0	0	0	11730	652	23	1	560	1	PDE2A	11	72290399	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	989	72290399	62716117	12265	20416											
PDE2A	5138	broad.mit.edu	37	chr11	72302300	72302300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccaccagctgtgataaGggtcttcagcctcattgcac	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72302300	T	T	72302300	1	4	9	0	1	0	0	0	0	0	0	0	11730	1015	35	2		2	PDE2A	11	72302300	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11901	72302300	62704216	12266	20417											
ARAP1	116985	broad.mit.edu	37	chr11	72468961	72468961	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggcacagggaggtgagactCggggtgggggcaaagaagat	20	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72468961	A	A	72468961	1	1	9	0	1	0	0	0	0	0	0	0	840	899	31	3		3	ARAP1	11	72468961	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	166661	72468961	62537555	12267	20418											
ATG16L2	89849	broad.mit.edu	37	chr11	72540382	72540382	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggcctggtgctactccGggagccacatggtgagcgtg	16	12	0	1	rs142770133		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72540382	C	C	72540382	3	2	9	1	0	0	0	0	1	0	0	0	1096	1116	39	4	1877	4	ATG16L2	11	72540382	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71421	72540382	62466134	12268	20419											
FCHSD2	9873	broad.mit.edu	37	chr11	72695252	72695252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaattacactcagatcgccGggcttttaactaaaacatag	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72695252	T	T	72695252	2	4	9	1	0	0	0	0	0	0	0	1	5847	1115	39	1		1	FCHSD2	11	72695252	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	154870	72695252	62311264	12269	20420											
P2RY6	5031	broad.mit.edu	37	chr11	73007955	73007955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctgggcatctgccaccCgctggccccctggcacaaac	9	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73007955	A	A	73007955	3	1	9	1	0	0	0	0	1	0	0	0	11448	652	23	1	394	1	P2RY6	11	73007955	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	312703	73007955	61998561	12270	20421											
RELT	84957	broad.mit.edu	37	chr11	73105467	73105467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcaccctgttccctgctGgggtctcctgcccctggcct	10	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73105467	T	T	73105467	1	4	9	0	1	0	0	0	0	0	0	0	13329	1363	47	2		2	RELT	11	73105467	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	97512	73105467	61901049	12271	20422											
RAB6A	5870	broad.mit.edu	37	chr11	73390693	73390693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttccaatgaaataaaaaGgatactatcttctctgcttc	4	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73390693	T	T	73390693	1	4	9	0	1	0	0	0	0	0	0	0	13059	1015	35	2		2	RAB6A	11	73390693	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	285226	73390693	61615823	12272	20423											
PAAF1	80227	broad.mit.edu	37	chr11	73589873	73589873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcccccaggtaataccCatgaattatatatgctgtga	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73589873	A	A	73589873	1	1	9	0	1	0	0	0	0	0	0	0	11456	609	21	2		2	PAAF1	11	73589873	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	199180	73589873	61416643	12273	20424											
PAAF1	80227	broad.mit.edu	37	chr11	73611402	73611402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgggggaatggatgccCagctgaagatatggtcagct	16	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73611402	A	A	73611402	3	1	9	1	0	0	0	0	1	0	0	0	11456	595	21	2	491	2	PAAF1	11	73611402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21529	73611402	61395114	12274	20425											
UCP2	7351	broad.mit.edu	37	chr11	73689042	73689042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccattgtagaggcttcGggggccctcagtacgcacca	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73689042	T	T	73689042	2	4	9	1	0	0	0	0	0	0	0	1	17057	1124	39	1		1	UCP2	11	73689042	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	77640	73689042	61317474	12275	20426											
UCP3	7352	broad.mit.edu	37	chr11	73712500	73712500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggactttcatcagggccCgtttcagctgctcataggtt	10	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73712500	A	A	73712500	3	1	9	1	0	0	0	0	1	0	0	0	17058	652	23	1	46	1	UCP3	11	73712500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23458	73712500	61294016	12276	20427											
C2CD3	26005	broad.mit.edu	37	chr11	73850653	73850653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggtatggtaattacctcGgagtggttgatctactgctg	12	6	1	1	rs149910292	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73850653	T	T	73850653	3	4	9	1	0	0	0	0	1	0	0	0	2176	1116	39	1	5299	1	C2CD3	11	73850653	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138153	73850653	61155863	12277	20428											
C2CD3	26005	broad.mit.edu	37	chr11	73879494	73879494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatccctgggacaaaagaGggttccatctgatgtttctc	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73879494	T	T	73879494	3	4	9	1	0	0	0	0	1	0	0	0	2176	1000	35	2	5791	2	C2CD3	11	73879494	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28841	73879494	61127022	12278	20429											
P4HA3	283208	broad.mit.edu	37	chr11	73990446	73990446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaccttttgctgatgcGgtactccacttgtaactgct	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73990446	T	T	73990446	3	4	9	1	0	0	0	0	1	0	0	0	11452	1116	39	1	496	1	P4HA3	11	73990446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110952	73990446	61016070	12279	20430											
P4HA3	283208	broad.mit.edu	37	chr11	74015318	74015318	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctcctcctcattacctcGgatgttctcactggcctcca	6	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74015318	T	T	74015318	2	4	9	1	0	0	0	0	0	0	0	1	11452	1124	39	1		1	P4HA3	11	74015318	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24872	74015318	60991198	12280	20431											
PGM2L1	283209	broad.mit.edu	37	chr11	74057889	74057889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttcctgaaacagtgaccCaaaaagctggattgtactga	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74057889	A	A	74057889	1	1	9	0	1	0	0	0	0	0	0	0	11894	609	21	2		2	PGM2L1	11	74057889	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42571	74057889	60948627	12281	20432											
PGM2L1	283209	broad.mit.edu	37	chr11	74082789	74082789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctagttacttgacccCgagtgtcatacccaaccaca	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74082789	A	A	74082789	3	1	9	1	0	0	0	0	1	0	0	0	11894	652	23	1	1563	1	PGM2L1	11	74082789	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24900	74082789	60923727	12282	20433											
POLD3	10714	broad.mit.edu	37	chr11	74329614	74329614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatgtgcagctgccgtccCtagagctcctgctgaatcct	9	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74329614	A	A	74329614	3	1	9	1	0	0	0	0	1	0	0	0	12287	681	24	2	447	2	POLD3	11	74329614	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	246825	74329614	60676902	12283	20434											
POLD3	10714	broad.mit.edu	37	chr11	74340270	74340270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatggcaacagggggaagcGagtagcattatctgatgatg	16	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74340270	T	T	74340270	3	4	9	1	0	0	0	0	1	0	0	0	12287	1058	37	3	942	3	POLD3	11	74340270	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10656	74340270	60666246	12284	20435											
RNF169	254225	broad.mit.edu	37	chr11	74528742	74528742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagaacaactcctactcCttagctttcctggcagggta	7	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74528742	A	A	74528742	2	1	9	1	0	0	0	0	0	0	0	1	13571	668	24	2		2	RNF169	11	74528742	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	188472	74528742	60477774	12285	20436											
SPCS2	9789	broad.mit.edu	37	chr11	74680791	74680791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctggtgttggatttgccCtggcatgttgtcattatcaa	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74680791	A	A	74680791	1	1	9	0	1	0	0	0	0	0	0	0	15140	696	24	2		2	SPCS2	11	74680791	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	152049	74680791	60325725	12286	20437											
NEU3	10825	broad.mit.edu	37	chr11	74717448	74717448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgagcagattgccttcCgcctgtttacacaccgggag	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74717448	A	A	74717448	3	1	9	1	0	0	0	0	1	0	0	0	10438	652	23	1	1307	1	NEU3	11	74717448	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36657	74717448	60289068	12287	20438											
NEU3	10825	broad.mit.edu	37	chr11	74717463	74717463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccgcctgtttacacacCgggagatcctgagtcacctg	9	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74717463	A	A	74717463	2	1	9	1	0	0	0	0	0	0	0	1	10438	643	23	1		1	NEU3	11	74717463	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	74717463	60289053	12288	20439											
SLCO2B1	11309	broad.mit.edu	37	chr11	74873658	74873658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtcagggccattctcgGggattctatctattctcttt	9	10	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74873658	T	T	74873658	1	4	9	0	1	0	0	0	0	0	0	0	14841	1247	43	2		2	SLCO2B1	11	74873658	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	156195	74873658	60132858	12289	20440											
SLCO2B1	11309	broad.mit.edu	37	chr11	74876950	74876950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgctcatgactctccCgcacttcatctcggagccat	9	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74876950	A	A	74876950	3	1	9	1	0	0	0	0	1	0	0	0	14841	652	23	1	418	1	SLCO2B1	11	74876950	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3292	74876950	60129566	12290	20441											
SLCO2B1	11309	broad.mit.edu	37	chr11	74876963	74876963	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctcccgcacttcatctcGgagccataccgctacgacaa	6	17	3	0	rs139600325		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74876963	T	T	74876963	2	4	9	1	0	0	0	0	0	0	0	1	14841	1103	39	1		1	SLCO2B1	11	74876963	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	74876963	60129553	12291	20442											
ARRB1	408	broad.mit.edu	37	chr11	74985178	74985178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgtccaaggcgaggcccCgcttctctcggttattggct	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74985178	A	A	74985178	3	1	9	1	0	0	0	0	1	0	0	0	984	652	23	1	426	1	ARRB1	11	74985178	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108215	74985178	60021338	12292	20443											
ARRB1	408	broad.mit.edu	37	chr11	74988358	74988358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagccacccccagcccttGggaagattgcctctcgctgt	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74988358	T	T	74988358	1	4	9	0	1	0	0	0	0	0	0	0	984	1363	47	2		2	ARRB1	11	74988358	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3180	74988358	60018158	12293	20444											
ARRB1	408	broad.mit.edu	37	chr11	74988430	74988430	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcttgatcttcttcacCgtcttgttggtgttgttggt	11	7	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74988430	A	A	74988430	2	1	9	1	0	0	0	0	0	0	0	1	984	639	23	1		1	ARRB1	11	74988430	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	74988430	60018086	12294	20445											
RPS3	6188	broad.mit.edu	37	chr11	75111467	75111467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgatgacgagtctgacttGgggatgttctctttgcccag	13	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75111467	T	T	75111467	1	4	9	0	1	0	0	0	0	0	0	0	13754	1363	47	2		2	RPS3	11	75111467	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	123037	75111467	59895049	12295	20446											
GDPD5	81544	broad.mit.edu	37	chr11	75146602	75146602	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggctgccaccccctcGggggcccacaggggtggcgg	19	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75146602	T	T	75146602	2	4	9	1	0	0	0	0	0	0	0	1	6391	1124	39	1		1	GDPD5	11	75146602	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35135	75146602	59859914	12296	20447											
MAP6	4135	broad.mit.edu	37	chr11	75298606	75298606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggcactttcatccttcGgatgctctgggaccatggga	11	12	2	0	rs140994962	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75298606	T	T	75298606	3	4	9	1	0	0	0	0	1	0	0	0	9356	1116	39	1	505	1	MAP6	11	75298606	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	152004	75298606	59707910	12297	20448											
MAP6	4135	broad.mit.edu	37	chr11	75299016	75299016	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttaaaggctcagggacCgtgtgatcttgatccttgac	10	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75299016	A	A	75299016	2	1	9	1	0	0	0	0	0	0	0	1	9356	639	23	1		1	MAP6	11	75299016	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	410	75299016	59707500	12298	20449											
MAP6	4135	broad.mit.edu	37	chr11	75316802	75316802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttaaaaaaaaaaagttGgggggagggagagagagaga	17	0	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75316802	T	T	75316802	1	4	9	0	1	0	0	0	0	0	0	0	9356	1363	47	2		2	MAP6	11	75316802	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17786	75316802	59689714	12299	20450											
MAP6	4135	broad.mit.edu	37	chr11	75319346	75319346	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcacaggcttgatgtcCgtccatgccctgaattcatt	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75319346	A	A	75319346	2	1	9	1	0	0	0	0	0	0	0	1	9356	639	23	1		1	MAP6	11	75319346	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2544	75319346	59687170	12300	20451											
MAP6	4135	broad.mit.edu	37	chr11	75356084	75356084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggcatggattccatacaGgaacaacacctaaacccaag	7	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75356084	T	T	75356084	1	4	9	0	1	0	0	0	0	0	0	0	9356	1015	35	2		2	MAP6	11	75356084	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36738	75356084	59650432	12301	20452											
MOGAT2	80168	broad.mit.edu	37	chr11	75431107	75431107	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcactgtcctgtatgcGgcctggtggtatctggaccg	12	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75431107	T	T	75431107	2	4	9	1	0	0	0	0	0	0	0	1	9789	1103	39	1		1	MOGAT2	11	75431107	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	75023	75431107	59575409	12302	20453											
MOGAT2	80168	broad.mit.edu	37	chr11	75431209	75431209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatgaaggactatttcccCatctcggtgagtattgaggc	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75431209	A	A	75431209	2	1	9	1	0	0	0	0	0	0	0	1	9789	581	21	2		2	MOGAT2	11	75431209	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	75431209	59575307	12303	20454											
UVRAG	7405	broad.mit.edu	37	chr11	75562961	75562961	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttcggaacattgctgccCggaacattgttaatagaaat	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75562961	A	A	75562961	2	1	9	1	0	0	0	0	0	0	0	1	17235	643	23	1		1	UVRAG	11	75562961	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	131752	75562961	59443555	12304	20455											
UVRAG	7405	broad.mit.edu	37	chr11	75590943	75590943	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcccacgtggcgaagtctCgattttggaattatgccaga	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75590943	A	A	75590943	2	1	9	1	0	0	0	0	0	0	0	1	17235	871	31	3		3	UVRAG	11	75590943	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27982	75590943	59415573	12305	20456											
UVRAG	7405	broad.mit.edu	37	chr11	75727888	75727888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaagcattgctgttgccCttggttatactgcacatctg	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75727888	A	A	75727888	3	1	9	1	0	0	0	0	1	0	0	0	17235	681	24	2	1136	2	UVRAG	11	75727888	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136945	75727888	59278628	12306	20457											
UVRAG	7405	broad.mit.edu	37	chr11	75727941	75727941	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctttttcctacaagtgccCctcagatatcctataattca	3	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75727941	G	G	75727941	2	3	9	1	0	0	0	0	0	0	0	1	17235	610	22	4		4	UVRAG	11	75727941	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	75727941	59278575	12307	20458											
C11orf30	56946	broad.mit.edu	37	chr11	76171053	76171053	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtggcagcatagcaacGgttaagtctccaagacctgc	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76171053	T	T	76171053	2	4	9	1	0	0	0	0	0	0	0	1	1648	1103	39	1		1	C11orf30	11	76171053	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	443112	76171053	58835463	12308	20459											
C11orf30	56946	broad.mit.edu	37	chr11	76255568	76255568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctccagcacaaactccCgcaaatgccccagctttcca	5	19	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76255568	A	A	76255568	3	1	9	1	0	0	0	0	1	0	0	0	1648	652	23	1	3045	1	C11orf30	11	76255568	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84515	76255568	58750948	12309	20460											
ACER3	55331	broad.mit.edu	37	chr11	76701605	76701605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttaaggtaaaagagcCgatattccatcaggtaattt	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76701605	A	A	76701605	3	1	9	1	0	0	0	0	1	0	0	0	140	652	23	1	447	1	ACER3	11	76701605	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	446037	76701605	58304911	12310	20461											
CAPN5	726	broad.mit.edu	37	chr11	76825351	76825351	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcactggtggacttcacGggtggtgtttctgagcccat	14	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76825351	T	T	76825351	2	4	9	1	0	0	0	0	0	0	0	1	2655	1103	39	1		1	CAPN5	11	76825351	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	123746	76825351	58181165	12311	20462											
MYO7A	4647	broad.mit.edu	37	chr11	76874071	76874071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtctgtcactccctgccCgtggccctgccttcccctgc	9	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76874071	A	A	76874071	1	1	9	0	1	0	0	0	0	0	0	0	10176	667	23	1		1	MYO7A	11	76874071	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	48720	76874071	58132445	12312	20463											
MYO7A	4647	broad.mit.edu	37	chr11	76909586	76909586	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgtggccgtcaactggacGggtgtgtactttgtggatga	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76909586	T	T	76909586	2	4	9	1	0	0	0	0	0	0	0	1	10176	1103	39	1		1	MYO7A	11	76909586	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35515	76909586	58096930	12313	20464											
PAK1	5058	broad.mit.edu	37	chr11	77043842	77043842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcggttcagaaagtccCggaagatagctgacagcttc	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77043842	A	A	77043842	3	1	9	1	0	0	0	0	1	0	0	0	11493	652	23	1	214	1	PAK1	11	77043842	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	134256	77043842	57962674	12314	20465											
PAK1	5058	broad.mit.edu	37	chr11	77051696	77051696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccttggccttacctcacGgcacacagctgcaatttggc	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77051696	T	T	77051696	3	4	9	1	0	0	0	0	1	0	0	0	11493	1116	39	1	599	1	PAK1	11	77051696	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7854	77051696	57954820	12315	20466											
PAK1	5058	broad.mit.edu	37	chr11	77066841	77066841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagatgtagccacgtccCgagttggagtgacaggaagt	16	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77066841	A	A	77066841	3	1	9	1	0	0	0	0	1	0	0	0	11493	652	23	1	1082	1	PAK1	11	77066841	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15145	77066841	57939675	12316	20467											
PAK1	5058	broad.mit.edu	37	chr11	77090412	77090412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgatgtctgaagcaagcGggcccactgctctggcattc	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77090412	T	T	77090412	3	4	9	1	0	0	0	0	1	0	0	0	11493	1116	39	1	1425	1	PAK1	11	77090412	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23571	77090412	57916104	12317	20468											
AQP11	282679	broad.mit.edu	37	chr11	77301516	77301516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcttgcaagaatcccatccGagtcgacttgctcaaagcgg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77301516	T	T	77301516	3	4	9	1	0	0	0	0	1	0	0	0	825	1058	37	3	481	3	AQP11	11	77301516	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	211104	77301516	57705000	12318	20469											
AQP11	282679	broad.mit.edu	37	chr11	77314631	77314631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggagctgtatttaatcCagctttggcactttcgctac	8	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77314631	A	A	77314631	3	1	9	1	0	0	0	0	1	0	0	0	825	594	21	2	656	2	AQP11	11	77314631	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13115	77314631	57691885	12319	20470											
AQP11	282679	broad.mit.edu	37	chr11	77314717	77314717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggctggctccttctttaGgtaagcgtatttttatttaa	8	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77314717	T	T	77314717	3	4	9	1	0	0	0	0	1	0	0	0	825	1014	35	2	742	2	AQP11	11	77314717	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86	77314717	57691799	12320	20471											
RSF1	51773	broad.mit.edu	37	chr11	77383165	77383165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcaaactcttctgggaacCgtcactttctgagtcttctt	7	12	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77383165	A	A	77383165	3	1	9	1	0	0	0	0	1	0	0	0	13810	652	23	1	660	1	RSF1	11	77383165	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68448	77383165	57623351	12321	20472											
RSF1	51773	broad.mit.edu	37	chr11	77389031	77389031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaatcatgatacataacGggaaagagaataaaaacata	6	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77389031	T	T	77389031	1	4	9	0	1	0	0	0	0	0	0	0	13810	1131	39	1		1	RSF1	11	77389031	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5866	77389031	57617485	12322	20473											
RSF1	51773	broad.mit.edu	37	chr11	77389070	77389070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgctcactgccctaatttGggcacctgaatgaacttctt	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77389070	T	T	77389070	1	4	9	0	1	0	0	0	0	0	0	0	13810	1363	47	2		2	RSF1	11	77389070	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	77389070	57617446	12323	20474											
RSF1	51773	broad.mit.edu	37	chr11	77412036	77412036	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactttggggggagaatcGggcttctttttccgacttga	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77412036	T	T	77412036	2	4	9	1	0	0	0	0	0	0	0	1	13810	1103	39	1		1	RSF1	11	77412036	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22966	77412036	57594480	12324	20475											
RSF1	51773	broad.mit.edu	37	chr11	77412678	77412678	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttccatttctggaggatcGggttcctctatttgtgcttt	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77412678	T	T	77412678	2	4	9	1	0	0	0	0	0	0	0	1	13810	1103	39	1		1	RSF1	11	77412678	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	642	77412678	57593838	12325	20476											
RSF1	51773	broad.mit.edu	37	chr11	77445834	77445834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatcctgaaggaagattcGgccacctcgttggttctgca	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77445834	T	T	77445834	1	4	9	0	1	0	0	0	0	0	0	0	13810	1131	39	1		1	RSF1	11	77445834	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	33156	77445834	57560682	12326	20477											
INTS4	92105	broad.mit.edu	37	chr11	77649766	77649766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaatcaagttcacagcccCggtatctacttcttccttgg	6	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77649766	A	A	77649766	3	1	9	1	0	0	0	0	1	0	0	0	7850	652	23	1	1851	1	INTS4	11	77649766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	203932	77649766	57356750	12327	20478											
INTS4	92105	broad.mit.edu	37	chr11	77705667	77705667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgaattcctcataaaccCgcttcttaaggtgcgccgcc	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77705667	A	A	77705667	3	1	9	1	0	0	0	0	1	0	0	0	7850	652	23	1	2960	1	INTS4	11	77705667	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55901	77705667	57300849	12328	20479											
ALG8	79053	broad.mit.edu	37	chr11	77820536	77820536	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgccaagggagtcactgaGggaaggactgtgtgttggaa	17	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77820536	T	T	77820536	2	4	9	1	0	0	0	0	0	0	0	1	523	987	35	2		2	ALG8	11	77820536	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	114869	77820536	57185980	12329	20480											
ALG8	79053	broad.mit.edu	37	chr11	77820571	77820571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaactgctgaaccaaacCacttgtcattgaggccttgg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77820571	A	A	77820571	3	1	9	1	0	0	0	0	1	0	0	0	523	594	21	2	704	2	ALG8	11	77820571	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	77820571	57185945	12330	20481											
ALG8	79053	broad.mit.edu	37	chr11	77832145	77832145	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccgaagttccacagaagTaataccgacagaataaattt	6	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77832145	C	C	77832145	2	2	9	1	0	0	0	0	0	0	0	1	523	1635	57	5		5	ALG8	11	77832145	Silent	SNP	T	TCGA-05-4396-01A-21D-1855-08	11574	77832145	57174371	12331	20482											
USP35	57558	broad.mit.edu	37	chr11	77910564	77910564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaacccaggacattacGgatagcccctgggctgccct	13	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77910564	T	T	77910564	1	4	9	0	1	0	0	0	0	0	0	0	17193	1131	39	1		1	USP35	11	77910564	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78419	77910564	57095952	12332	20483											
GAB2	9846	broad.mit.edu	37	chr11	77934655	77934655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacagggtggaagaacctGgattcatgggcacatagttg	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77934655	T	T	77934655	3	4	9	1	0	0	0	0	1	0	0	0	6209	1348	47	2	680	2	GAB2	11	77934655	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24091	77934655	57071861	12333	20484											
NARS2	79731	broad.mit.edu	37	chr11	78152160	78152160	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtagacttctgtaagtccCgatctgtttaaaggaaaata	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78152160	A	A	78152160	2	1	9	1	0	0	0	0	0	0	0	1	10265	639	23	1		1	NARS2	11	78152160	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	217505	78152160	56854356	12334	20485											
NARS2	79731	broad.mit.edu	37	chr11	78279764	78279764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactttttatcagctgccCttgtacttccacagaactcc	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78279764	A	A	78279764	3	1	9	1	0	0	0	0	1	0	0	0	10265	681	24	2	1195	2	NARS2	11	78279764	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127604	78279764	56726752	12335	20486											
ODZ4	26011	broad.mit.edu	37	chr11	78369092	78369092	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttggcaagaagtccttGgtcctctctgtcacctccgg	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78369092	T	T	78369092	1	4	9	0	1	0	0	0	0	0	0	0	10932	1363	47	2		2	ODZ4	11	78369092	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	89328	78369092	56637424	12336	20487											
ODZ4	26011	broad.mit.edu	37	chr11	78369120	78369120	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtcacctccggcccatctCgctctgtctcatgaagtgga	9	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78369120	A	A	78369120	4	1	9	1	0	0	0	0	0	1	0	0	10932	893	31	3	20	3	ODZ4	11	78369120	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	78369120	56637396	12337	20488											
ODZ4	26011	broad.mit.edu	37	chr11	78369177	78369177	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgacagttctgggtactgctCgacagagatcacgaaaaagc	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78369177	A	A	78369177	4	1	9	1	0	0	0	0	0	1	0	0	10932	893	31	3	77	3	ODZ4	11	78369177	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	78369177	56637339	12338	20489											
ODZ4	26011	broad.mit.edu	37	chr11	78369260	78369260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccccctctgtccaggccCgcaggccttcctccccttcc	6	23	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78369260	A	A	78369260	3	1	9	1	0	0	0	0	1	0	0	0	10932	652	23	1	160	1	ODZ4	11	78369260	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	78369260	56637256	12339	20490											
ODZ4	26011	broad.mit.edu	37	chr11	78380677	78380677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggtcgcggatgtcatacCgtagtggtgtgagccgtgca	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78380677	A	A	78380677	3	1	9	1	0	0	0	0	1	0	0	0	10932	652	23	1	1608	1	ODZ4	11	78380677	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11417	78380677	56625839	12340	20491											
PRCP	5547	broad.mit.edu	37	chr11	82561019	82561019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctctgaacaatgtggacCgcttttcctaaaatctgtag	8	10	2	1	rs140634119		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82561019	A	A	82561019	3	1	9	1	0	0	0	0	1	0	0	0	12555	652	23	1	822	1	PRCP	11	82561019	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4180342	82561019	52445497	12341	20492											
PRCP	5547	broad.mit.edu	37	chr11	82561381	82561381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacccaactaccatatgaGgatatttcatcctaaaccag	4	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82561381	T	T	82561381	3	4	9	1	0	0	0	0	1	0	0	0	12555	1000	35	2	936	2	PRCP	11	82561381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	362	82561381	52445135	12342	20493											
C11orf82	220042	broad.mit.edu	37	chr11	82625770	82625770	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttgttttgcagaccacGgtgtgaacacatgaacagaa	9	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82625770	T	T	82625770	1	4	9	0	1	0	0	0	0	0	0	0	1677	1131	39	1		1	C11orf82	11	82625770	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	64389	82625770	52380746	12343	20494											
C11orf82	220042	broad.mit.edu	37	chr11	82643492	82643492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtcccagcatgagctacCatgttttcagcatcatggta	9	10	2	1	rs111801671		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82643492	A	A	82643492	3	1	9	1	0	0	0	0	1	0	0	0	1677	594	21	2	1126	2	C11orf82	11	82643492	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17722	82643492	52363024	12344	20495											
C11orf82	220042	broad.mit.edu	37	chr11	82643522	82643522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcatggtatagatacccCaactagccttcagaagagat	8	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82643522	A	A	82643522	3	1	9	1	0	0	0	0	1	0	0	0	1677	594	21	2	1156	2	C11orf82	11	82643522	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	82643522	52362994	12345	20496											
C11orf82	220042	broad.mit.edu	37	chr11	82644341	82644341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacattgaaagaaatgccttGgggacatatcaataacaacg	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82644341	T	T	82644341	3	4	9	1	0	0	0	0	1	0	0	0	1677	1357	47	2	1975	2	C11orf82	11	82644341	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	819	82644341	52362175	12346	20497											
PCF11	51585	broad.mit.edu	37	chr11	82880736	82880736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagatttgacaatcatcCttcacaaaggcttgaatcag	6	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82880736	A	A	82880736	3	1	9	1	0	0	0	0	1	0	0	0	11667	681	24	2	3389	2	PCF11	11	82880736	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	236395	82880736	52125780	12347	20498											
PCF11	51585	broad.mit.edu	37	chr11	82880778	82880778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttcaatcagactggtcCatataatgatccacctggca	6	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82880778	A	A	82880778	3	1	9	1	0	0	0	0	1	0	0	0	11667	594	21	2	3431	2	PCF11	11	82880778	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	82880778	52125738	12348	20499											
ANKRD42	338699	broad.mit.edu	37	chr11	82922342	82922342	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatgttacctctaggatccCagtgtgactgataagagaga	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82922342	G	G	82922342	2	3	9	1	0	0	0	0	0	0	0	1	670	581	21	4		4	ANKRD42	11	82922342	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41564	82922342	52084174	12349	20500											
CCDC90B	60492	broad.mit.edu	37	chr11	82991264	82991264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagttatatccactggcCgcctatcatatccctccttg	7	13	1	0	rs61747435	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82991264	A	A	82991264	3	1	9	1	0	0	0	0	1	0	0	0	2897	652	23	1	656	1	CCDC90B	11	82991264	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68922	82991264	52015252	12350	20501											
DLG2	1740	broad.mit.edu	37	chr11	83641499	83641499	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcttatcacatagtttgttCacagtgctgtaaacaggttc	9	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83641499	A	A	83641499	2	1	9	1	0	0	0	0	0	0	0	1	4595	813	29	3		3	DLG2	11	83641499	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	650235	83641499	51365017	12351	20502											
TMEM126A	84233	broad.mit.edu	37	chr11	85366728	85366728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgttttcttggctatacCtgtaaatggtggtctagcag	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85366728	A	A	85366728	3	1	9	1	0	0	0	0	1	0	0	0	16161	681	24	2	381	2	TMEM126A	11	85366728	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1725229	85366728	49639788	12352	20503											
SYTL2	54843	broad.mit.edu	37	chr11	85420374	85420374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactctaaaatgtacttacGggtctgaacgctgttttttt	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85420374	T	T	85420374	3	4	9	1	0	0	0	0	1	0	0	0	15602	1130	39	1	832	1	SYTL2	11	85420374	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53646	85420374	49586142	12353	20504											
SYTL2	54843	broad.mit.edu	37	chr11	85445574	85445574	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccctctcggagcccctctCgctttcagggagtctgtcct	9	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85445574	A	A	85445574	2	1	9	1	0	0	0	0	0	0	0	1	15602	871	31	3		3	SYTL2	11	85445574	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25200	85445574	49560942	12354	20505											
EED	8726	broad.mit.edu	37	chr11	85989031	85989031	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaagatcctcataaagcCaagtaagtatttagaaattt	7	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85989031	A	A	85989031	2	1	9	1	0	0	0	0	0	0	0	1	4962	581	21	2		2	EED	11	85989031	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	543457	85989031	49017485	12355	20506											
CCDC81	60494	broad.mit.edu	37	chr11	86123498	86123498	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagcaagaggaatattccCggagtctcctgaaacaaatg	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86123498	A	A	86123498	2	1	9	1	0	0	0	0	0	0	0	1	2883	643	23	1		1	CCDC81	11	86123498	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	134467	86123498	48883018	12356	20507											
CCDC81	60494	broad.mit.edu	37	chr11	86126235	86126235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatggtggaaaagcaaaagcGagaacaaaattacatgaaac	10	5	0	2	rs142365080		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86126235	T	T	86126235	3	4	9	1	0	0	0	0	1	0	0	0	2883	1058	37	3	1621	3	CCDC81	11	86126235	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2737	86126235	48880281	12357	20508											
PRSS23	11098	broad.mit.edu	37	chr11	86568962	86568962	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgaccaggtacatggacAgggagagcccagtgaggacg	16	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86568962	T	T	86568962	1	4	9	0	1	0	0	0	0	0	0	0	12726	203	7	5		5	PRSS23	11	86568962	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	442727	86568962	48437554	12358	20509											
FZD4	8322	broad.mit.edu	37	chr11	86662401	86662401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatcatctgcagaatacCgaaaaagtgcccagttggag	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86662401	A	A	86662401	3	1	9	1	0	0	0	0	1	0	0	0	6192	652	23	1	220	1	FZD4	11	86662401	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93439	86662401	48344115	12359	20510											
FZD4	8322	broad.mit.edu	37	chr11	86663408	86663408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccaaattccttcaggacGggttcacagcgtctcttgac	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86663408	T	T	86663408	2	4	9	1	0	0	0	0	0	0	0	1	6192	1103	39	1		1	FZD4	11	86663408	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1007	86663408	48343108	12360	20511											
RAB38	23682	broad.mit.edu	37	chr11	87882996	87882996	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattagggagacttaacttGgagtccaaatcatttttcca	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87882996	T	T	87882996	2	4	9	1	0	0	0	0	0	0	0	1	13036	1335	47	2		2	RAB38	11	87882996	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1219588	87882996	47123520	12361	20512											
RAB38	23682	broad.mit.edu	37	chr11	87883085	87883085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcacccatagcttctcGgtaatagaccctcgtcatgt	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87883085	T	T	87883085	2	4	9	1	0	0	0	0	0	0	0	1	13036	1124	39	1		1	RAB38	11	87883085	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	89	87883085	47123431	12362	20513											
CTSC	1075	broad.mit.edu	37	chr11	88027536	88027536	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctcctacatagtggtactCagaggagtaataacgaaagc	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88027536	A	A	88027536	4	1	9	1	0	0	0	0	0	1	0	0	4065	835	29	3	365	3	CTSC	11	88027536	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144451	88027536	46978980	12363	20514											
CTSC	1075	broad.mit.edu	37	chr11	88042494	88042494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctattagaatacctgtcccCaaaaatgagataatttcaga	5	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88042494	A	A	88042494	1	1	9	0	1	0	0	0	0	0	0	0	4065	609	21	2		2	CTSC	11	88042494	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14958	88042494	46964022	12364	20515											
CTSC	1075	broad.mit.edu	37	chr11	88045627	88045627	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttcccaccttctttccGgtgaaacaagcccagttccg	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88045627	T	T	88045627	2	4	9	1	0	0	0	0	0	0	0	1	4065	1103	39	1		1	CTSC	11	88045627	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3133	88045627	46960889	12365	20516											
CTSC	1075	broad.mit.edu	37	chr11	88059588	88059588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggttttaaaagagtccCtcaacagatgctctatttaa	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88059588	A	A	88059588	1	1	9	0	1	0	0	0	0	0	0	0	4065	696	24	2		2	CTSC	11	88059588	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13961	88059588	46946928	12366	20517											
GRM5	2915	broad.mit.edu	37	chr11	88258505	88258505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctctcccaccattccCcatactccctttgggggtga	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88258505	A	A	88258505	3	1	9	1	0	0	0	0	1	0	0	0	6866	623	22	2	948	2	GRM5	11	88258505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	198917	88258505	46748011	12367	20518											
TYR	7299	broad.mit.edu	37	chr11	88961019	88961019	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccacttactgggatagcGgatgcctctcaaagcagcat	10	11	1	0	rs1800421		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88961019	T	T	88961019	2	4	9	1	0	0	0	0	0	0	0	1	16939	1103	39	1		1	TYR	11	88961019	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	702514	88961019	46045497	12368	20519											
TYR	7299	broad.mit.edu	37	chr11	89017969	89017969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtggctccgaaggcacCgtcctcttcaagaagtttat	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89017969	A	A	89017969	3	1	9	1	0	0	0	0	1	0	0	0	16939	652	23	1	1227	1	TYR	11	89017969	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56950	89017969	45988547	12369	20520											
NOX4	50507	broad.mit.edu	37	chr11	89070632	89070632	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacctgtatcccatctgtttGactgaggtacagctggatgt	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89070632	C	C	89070632	3	2	9	1	0	0	0	0	1	0	0	0	10653	1299	45	4	250	4	NOX4	11	89070632	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52663	89070632	45935884	12370	20521											
NOX4	50507	broad.mit.edu	37	chr11	89133329	89133329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctatgtttgctaaattcCaaaaattacataaggataaa	5	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89133329	A	A	89133329	1	1	9	0	1	0	0	0	0	0	0	0	10653	609	21	2		2	NOX4	11	89133329	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62697	89133329	45873187	12371	20522											
NAALAD2	10003	broad.mit.edu	37	chr11	89880633	89880633	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcctcttatcttacccCaatgagacaaatgccaacta	5	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89880633	A	A	89880633	2	1	9	1	0	0	0	0	0	0	0	1	10222	581	21	2		2	NAALAD2	11	89880633	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	747304	89880633	45125883	12372	20523											
NAALAD2	10003	broad.mit.edu	37	chr11	89891357	89891357	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggagtgggaatccccCgaatacctgtacatcccatt	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89891357	A	A	89891357	2	1	9	1	0	0	0	0	0	0	0	1	10222	644	23	1		1	NAALAD2	11	89891357	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10724	89891357	45115159	12373	20524											
NAALAD2	10003	broad.mit.edu	37	chr11	89896570	89896570	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttttgcaagaaattgccCggagttttggaaaactgatg	11	6	0	2	rs147308857	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89896570	A	A	89896570	2	1	9	1	0	0	0	0	0	0	0	1	10222	643	23	1		1	NAALAD2	11	89896570	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5213	89896570	45109946	12374	20525											
NAALAD2	10003	broad.mit.edu	37	chr11	89903370	89903370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaataacgtgtgttcccCcctaaattaatggtacttat	6	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89903370	A	A	89903370	1	1	9	0	1	0	0	0	0	0	0	0	10222	638	22	2		2	NAALAD2	11	89903370	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6800	89903370	45103146	12375	20526											
FAT3	120114	broad.mit.edu	37	chr11	92257841	92257841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgatcgggagacaatgGggtcatactggctaacagtg	13	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92257841	T	T	92257841	3	4	9	1	0	0	0	0	1	0	0	0	5748	1232	43	2	3340	2	FAT3	11	92257841	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2354471	92257841	42748675	12376	20527											
FAT3	120114	broad.mit.edu	37	chr11	92577303	92577303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacatttgccctgaaatcGgagcagaaaagcttatttaa	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92577303	T	T	92577303	2	4	9	1	0	0	0	0	0	0	0	1	5748	1103	39	1		1	FAT3	11	92577303	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	319462	92577303	42429213	12377	20528											
MTNR1B	4544	broad.mit.edu	37	chr11	92714597	92714597	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctcgtgctgactgttgctCtgtttgctgcttcaggtaat	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92714597	A	A	92714597	1	1	9	0	1	0	0	0	0	0	0	0	10046	928	32	3		3	MTNR1B	11	92714597	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	137294	92714597	42291919	12378	20529											
MTNR1B	4544	broad.mit.edu	37	chr11	92714673	92714673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggccttctacccctaccCgctaatcctcgtggccatct	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92714673	A	A	92714673	3	1	9	1	0	0	0	0	1	0	0	0	10046	652	23	1	290	1	MTNR1B	11	92714673	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	92714673	42291843	12379	20530											
MTNR1B	4544	broad.mit.edu	37	chr11	92715356	92715356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggaatacaagaggatcCtcttggccctttggaaccca	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92715356	A	A	92715356	3	1	9	1	0	0	0	0	1	0	0	0	10046	681	24	2	973	2	MTNR1B	11	92715356	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	683	92715356	42291160	12380	20531											
SLC36A4	120103	broad.mit.edu	37	chr11	92881668	92881668	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgataattttcagaaatGggacaaaaatagaagactca	7	5	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92881668	T	T	92881668	1	4	9	0	1	0	0	0	0	0	0	0	14710	1363	47	2		2	SLC36A4	11	92881668	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	166312	92881668	42124848	12381	20532											
CCDC67	159989	broad.mit.edu	37	chr11	93118683	93118683	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattaaaaataggagagtgCcaaaatgctcaaggaaataa	8	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93118683	A	A	93118683	4	1	9	1	0	0	0	0	0	1	0	0	2867	747	26	3	935	3	CCDC67	11	93118683	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	237015	93118683	41887833	12382	20533											
TAF1D	79101	broad.mit.edu	37	chr11	93464154	93464154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagttaatcaactgttccCaataagctgattgctagcaa	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93464154	A	A	93464154	1	1	9	0	1	0	0	0	0	0	0	0	15641	609	21	2		2	TAF1D	11	93464154	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	345471	93464154	41542362	12383	20534											
TAF1D	79101	broad.mit.edu	37	chr11	93464197	93464197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagatagaaaacctactGggaaatttttttatggtcat	8	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93464197	T	T	93464197	1	4	9	0	1	0	0	0	0	0	0	0	15641	1363	47	2		2	TAF1D	11	93464197	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43	93464197	41542319	12384	20535											
TAF1D	79101	broad.mit.edu	37	chr11	93470102	93470102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcaactgtaataatccCaattgtcatactctgtatct	5	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93470102	A	A	93470102	1	1	9	0	1	0	0	0	0	0	0	0	15641	609	21	2		2	TAF1D	11	93470102	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5905	93470102	41536414	12385	20536											
TAF1D	79101	broad.mit.edu	37	chr11	93471381	93471381	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttcttcttatctattagtGagtatataggatttctcctt	6	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93471381	T	T	93471381	4	4	9	1	0	0	0	0	0	1	0	0	15641	1294	45	3	499	3	TAF1D	11	93471381	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1279	93471381	41535135	12386	20537											
TAF1D	79101	broad.mit.edu	37	chr11	93471417	93471417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttccttctggtcttcccCgtggtcttcctgttggctgg	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93471417	A	A	93471417	3	1	9	1	0	0	0	0	1	0	0	0	15641	652	23	1	535	1	TAF1D	11	93471417	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	93471417	41535099	12387	20538											
MED17	9440	broad.mit.edu	37	chr11	93543019	93543019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccatcacggtggcctcccCaagtggtgactatgctattt	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93543019	A	A	93543019	3	1	9	1	0	0	0	0	1	0	0	0	9528	594	21	2	1763	2	MED17	11	93543019	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71602	93543019	41463497	12388	20539											
HEPHL1	341208	broad.mit.edu	37	chr11	93826713	93826713	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaaattggattggctctCagtacaagaaggtggtttac	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93826713	A	A	93826713	3	1	9	1	0	0	0	0	1	0	0	0	7122	827	29	3	2391	3	HEPHL1	11	93826713	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	283694	93826713	41179803	12389	20540											
HEPHL1	341208	broad.mit.edu	37	chr11	93844970	93844970	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccttctaatcaccacGgtgattctctccctcagact	4	17	4	2	rs118037969	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93844970	T	T	93844970	2	4	9	1	0	0	0	0	0	0	0	1	7122	1103	39	1		1	HEPHL1	11	93844970	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18257	93844970	41161546	12390	20541											
HEPHL1	341208	broad.mit.edu	37	chr11	93845045	93845045	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccagtcctgtgctctcccCacggatgctctgtgaaccat	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93845045	A	A	93845045	2	1	9	1	0	0	0	0	0	0	0	1	7122	581	21	2		2	HEPHL1	11	93845045	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	93845045	41161471	12391	20542											
PANX1	24145	broad.mit.edu	37	chr11	93911584	93911584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcctcctgtacctgccccCgctgttctggcgtttcgcag	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93911584	A	A	93911584	3	1	9	1	0	0	0	0	1	0	0	0	11514	652	23	1	381	1	PANX1	11	93911584	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66539	93911584	41094932	12392	20543											
PANX1	24145	broad.mit.edu	37	chr11	93912973	93912973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgcagcatcaaatcaGggatcctgagaaacgacagc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93912973	T	T	93912973	3	4	9	1	0	0	0	0	1	0	0	0	11514	1000	35	2	765	2	PANX1	11	93912973	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1389	93912973	41093543	12393	20544											
PANX1	24145	broad.mit.edu	37	chr11	93913089	93913089	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttatgtcctgctggctccCgtggttgtctacacgctgtt	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93913089	A	A	93913089	2	1	9	1	0	0	0	0	0	0	0	1	11514	639	23	1		1	PANX1	11	93913089	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	116	93913089	41093427	12394	20545											
FOLR4	390243	broad.mit.edu	37	chr11	94040803	94040803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccagctctgccccatcctGggaactgtcctacaccatca	7	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94040803	T	T	94040803	3	4	9	1	0	0	0	0	1	0	0	0	6042	1357	47	2	691	2	FOLR4	11	94040803	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127714	94040803	40965713	12395	20546											
MRE11A	4361	broad.mit.edu	37	chr11	94170372	94170372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttagtagtgacatttcGggaaggctgctgtcttgtag	12	6	2	1	rs137852759		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94170372	T	T	94170372	2	4	9	1	0	0	0	0	0	0	0	1	9853	1124	39	1		1	MRE11A	11	94170372	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	129569	94170372	40836144	12396	20547											
MRE11A	4361	broad.mit.edu	37	chr11	94200971	94200971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattcaatctatataaataGgacttactcgcagtcgtaca	5	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94200971	T	T	94200971	1	4	9	0	1	0	0	0	0	0	0	0	9853	1015	35	2		2	MRE11A	11	94200971	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30599	94200971	40805545	12397	20548											
ANKRD49	54851	broad.mit.edu	37	chr11	94229965	94229965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggaaacacatggacacCttattcctactggtactcaa	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94229965	A	A	94229965	3	1	9	1	0	0	0	0	1	0	0	0	675	681	24	2	108	2	ANKRD49	11	94229965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28994	94229965	40776551	12398	20549											
PIWIL4	143689	broad.mit.edu	37	chr11	94316571	94316571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcattctgcacacttgGggataatttgtagggtgcat	11	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94316571	T	T	94316571	1	4	9	0	1	0	0	0	0	0	0	0	12055	1247	43	2		2	PIWIL4	11	94316571	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	86606	94316571	40689945	12399	20550											
PIWIL4	143689	broad.mit.edu	37	chr11	94320232	94320232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagattatccctttggcctGggtttgccatttctgtgtca	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94320232	T	T	94320232	3	4	9	1	0	0	0	0	1	0	0	0	12055	1348	47	2	759	2	PIWIL4	11	94320232	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3661	94320232	40686284	12400	20551											
PIWIL4	143689	broad.mit.edu	37	chr11	94341770	94341770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagtccctgatggtggtcGgtattgatgtctgtaaagat	12	5	1	3	rs140154259		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94341770	T	T	94341770	3	4	9	1	0	0	0	0	1	0	0	0	12055	1116	39	1	1919	1	PIWIL4	11	94341770	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21538	94341770	40664746	12401	20552											
AMOTL1	154810	broad.mit.edu	37	chr11	94528201	94528201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttctgcttgttatagccCcagtagtcctgtccaggttc	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94528201	A	A	94528201	3	1	9	1	0	0	0	0	1	0	0	0	583	623	22	2	80	2	AMOTL1	11	94528201	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	186431	94528201	40478315	12402	20553											
AMOTL1	154810	broad.mit.edu	37	chr11	94533276	94533276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaaagtgctggaccctcGgggtcctccacctgagtacc	12	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94533276	T	T	94533276	3	4	9	1	0	0	0	0	1	0	0	0	583	1116	39	1	930	1	AMOTL1	11	94533276	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5075	94533276	40473240	12403	20554											
AMOTL1	154810	broad.mit.edu	37	chr11	94599210	94599210	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacagactcctccagcctaCgtcctgcccgctccgttcca	7	19	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94599210	T	T	94599210	3	4	9	1	0	0	0	0	1	0	0	0	583	536	19	4	2407	4	AMOTL1	11	94599210	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65934	94599210	40407306	12404	20555											
CWC15	51503	broad.mit.edu	37	chr11	94704193	94704193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcaggaatctggtctaacCgtggcttttttgacactgaa	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94704193	A	A	94704193	3	1	9	1	0	0	0	0	1	0	0	0	4100	652	23	1	423	1	CWC15	11	94704193	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104983	94704193	40302323	12405	20556											
KDM4D	55693	broad.mit.edu	37	chr11	94731315	94731315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaaggaaaatgggattcCcttcaatcgcataactcagg	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94731315	A	A	94731315	3	1	9	1	0	0	0	0	1	0	0	0	8201	623	22	2	781	2	KDM4D	11	94731315	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27122	94731315	40275201	12406	20557											
CEP57	9702	broad.mit.edu	37	chr11	95560960	95560960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctttagtccacaagccCtagccatgccgtggtagcca	8	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95560960	A	A	95560960	3	1	9	1	0	0	0	0	1	0	0	0	3286	681	24	2	930	2	CEP57	11	95560960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	829645	95560960	39445556	12407	20558											
MTMR2	8898	broad.mit.edu	37	chr11	95582867	95582867	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagcattaacacttggccGggcatcaaatataaagattt	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95582867	T	T	95582867	2	4	9	1	0	0	0	0	0	0	0	1	10038	1115	39	1		1	MTMR2	11	95582867	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21907	95582867	39423649	12408	20559											
MAML2	84441	broad.mit.edu	37	chr11	95826728	95826728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaataagaaatatgaatcCaatgatgcttctcataaaaa	4	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95826728	A	A	95826728	1	1	9	0	1	0	0	0	0	0	0	0	9298	609	21	2		2	MAML2	11	95826728	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	243861	95826728	39179788	12409	20560											
CCDC82	79780	broad.mit.edu	37	chr11	96092202	96092202	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccgcctgaaaattctttcCactgtttctttaacttgttc	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96092202	A	A	96092202	2	1	9	1	0	0	0	0	0	0	0	1	2884	581	21	2		2	CCDC82	11	96092202	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	265474	96092202	38914314	12410	20561											
CNTN5	53942	broad.mit.edu	37	chr11	100061877	100061877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatagctattcttccagacGggagtctacggatcctaaat	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100061877	T	T	100061877	3	4	9	1	0	0	0	0	1	0	0	0	3676	1116	39	1	1646	1	CNTN5	11	100061877	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3969675	100061877	34944639	12411	20562											
CNTN5	53942	broad.mit.edu	37	chr11	100141878	100141878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggctgtggacctaaatcCctgggtggaatatgaatttc	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100141878	A	A	100141878	3	1	9	1	0	0	0	0	1	0	0	0	3676	623	22	2	2281	2	CNTN5	11	100141878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80001	100141878	34864638	12412	20563											
PGR	5241	broad.mit.edu	37	chr11	100998808	100998808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctggcagccccggcccCgccgtcgtaactttcgtctt	12	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100998808	A	A	100998808	3	1	9	1	0	0	0	0	1	0	0	0	11900	652	23	1	1839	1	PGR	11	100998808	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	856930	100998808	34007708	12413	20564											
PGR	5241	broad.mit.edu	37	chr11	100999633	100999633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccgagggaagagtagccCgtccagggagataggtatgg	19	7	0	2	rs3740754		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100999633	A	A	100999633	3	1	9	1	0	0	0	0	1	0	0	0	11900	652	23	1	2664	1	PGR	11	100999633	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	825	100999633	34006883	12414	20565											
TRPC6	7225	broad.mit.edu	37	chr11	101341975	101341975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaacagctcagaaatcCattttttaagcttcagtaag	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101341975	A	A	101341975	3	1	9	1	0	0	0	0	1	0	0	0	16708	595	21	2	467	2	TRPC6	11	101341975	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	342342	101341975	33664541	12415	20566											
TRPC6	7225	broad.mit.edu	37	chr11	101342019	101342019	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaaacagggactttggactCggcaccagattgaagggtac	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101342019	A	A	101342019	2	1	9	1	0	0	0	0	0	0	0	1	16708	871	31	3		3	TRPC6	11	101342019	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	101342019	33664497	12416	20567											
TRPC6	7225	broad.mit.edu	37	chr11	101362222	101362222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatctaacaatatcaaccCtttatccttatttagcacca	1	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101362222	A	A	101362222	1	1	9	0	1	0	0	0	0	0	0	0	16708	696	24	2		2	TRPC6	11	101362222	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20203	101362222	33644294	12417	20568											
TRPC6	7225	broad.mit.edu	37	chr11	101362373	101362373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcgtttcaacatcccCattcagaatggcctcgactt	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101362373	A	A	101362373	3	1	9	1	0	0	0	0	1	0	0	0	16708	594	21	2	1797	2	TRPC6	11	101362373	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151	101362373	33644143	12418	20569											
TRPC6	7225	broad.mit.edu	37	chr11	101374977	101374977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgttcaatcctagcaccCttccgcaggagggtatgcac	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101374977	A	A	101374977	3	1	9	1	0	0	0	0	1	0	0	0	16708	680	24	2	2120	2	TRPC6	11	101374977	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12604	101374977	33631539	12419	20570											
KIAA1377	57562	broad.mit.edu	37	chr11	101818851	101818851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaaaccttcccttttccCgtagaccaacaataaactgg	5	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101818851	A	A	101818851	3	1	9	1	0	0	0	0	1	0	0	0	8297	652	23	1	498	1	KIAA1377	11	101818851	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	443874	101818851	33187665	12420	20571											
KIAA1377	57562	broad.mit.edu	37	chr11	101828968	101828968	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagaaacaactcttatcCaaaatcaattgtgagaaaga	5	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101828968	A	A	101828968	2	1	9	1	0	0	0	0	0	0	0	1	8297	581	21	2		2	KIAA1377	11	101828968	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10117	101828968	33177548	12421	20572											
BIRC2	329	broad.mit.edu	37	chr11	102220756	102220756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacatattcaactttcccCgccggggtgcctgtctcaga	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102220756	A	A	102220756	2	1	9	1	0	0	0	0	0	0	0	1	1441	639	23	1		1	BIRC2	11	102220756	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	391788	102220756	32785760	12422	20573											
BIRC2	329	broad.mit.edu	37	chr11	102221627	102221627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtggcttgaggtgttgGgaatctggagatgatccatg	17	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102221627	T	T	102221627	3	4	9	1	0	0	0	0	1	0	0	0	1441	1241	43	2	954	2	BIRC2	11	102221627	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	871	102221627	32784889	12423	20574											
MMP20	9313	broad.mit.edu	37	chr11	102477386	102477386	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggggcagagtgggcttcCccaggaatactttccgaggt	14	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102477386	T	T	102477386	3	4	9	1	0	0	0	0	1	0	0	0	9752	623	22	4	638	4	MMP20	11	102477386	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	255759	102477386	32529130	12424	20575											
MMP20	9313	broad.mit.edu	37	chr11	102479668	102479668	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaggtaataatcttacCgtataatgcctggatccctt	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102479668	A	A	102479668	4	1	9	1	0	0	0	0	0	1	0	0	9752	666	23	1	664	1	MMP20	11	102479668	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2282	102479668	32526848	12425	20576											
MMP20	9313	broad.mit.edu	37	chr11	102487572	102487572	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtattttttttccatttGggttcaccagggaagaggcg	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102487572	T	T	102487572	2	4	9	1	0	0	0	0	0	0	0	1	9752	1335	47	2		2	MMP20	11	102487572	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7904	102487572	32518944	12426	20577											
MMP20	9313	broad.mit.edu	37	chr11	102487664	102487664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtctggtctaacttccCggtgacttggaggccaaaga	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102487664	A	A	102487664	3	1	9	1	0	0	0	0	1	0	0	0	9752	652	23	1	1234	1	MMP20	11	102487664	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	102487664	32518852	12427	20578											
MMP27	64066	broad.mit.edu	37	chr11	102563734	102563734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgttttaccactctctgcGggaaccctttgtccatggtt	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102563734	T	T	102563734	3	4	9	1	0	0	0	0	1	0	0	0	9758	1116	39	1	317	1	MMP27	11	102563734	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	76070	102563734	32442782	12428	20579											
MMP27	64066	broad.mit.edu	37	chr11	102573831	102573831	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcagctcgtgccatatcCggagtatagtttattattct	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102573831	A	A	102573831	2	1	9	1	0	0	0	0	0	0	0	1	9758	639	23	1		1	MMP27	11	102573831	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10097	102573831	32432685	12429	20580											
MMP8	4317	broad.mit.edu	37	chr11	102593282	102593282	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcctcatttggcttcccCgtcacattcaacccaaaaaa	4	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102593282	A	A	102593282	2	1	9	1	0	0	0	0	0	0	0	1	9762	639	23	1		1	MMP8	11	102593282	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19451	102593282	32413234	12430	20581											
MMP1	4312	broad.mit.edu	37	chr11	102661498	102661498	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcatgtgctatcattttGggataacctggatccataga	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102661498	T	T	102661498	2	4	9	1	0	0	0	0	0	0	0	1	9741	1335	47	2		2	MMP1	11	102661498	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	68216	102661498	32345018	12431	20582											
MMP1	4312	broad.mit.edu	37	chr11	102668087	102668087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgcttcatcaccttcaGggtttcagcatctggtttcc	10	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102668087	T	T	102668087	3	4	9	1	0	0	0	0	1	0	0	0	9741	991	35	2	1195	2	MMP1	11	102668087	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6589	102668087	32338429	12432	20583											
MMP13	4322	broad.mit.edu	37	chr11	102815075	102815075	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattcaaactgtatgggtcCgttgaaaaaatagatataac	8	5	1	2	rs139939501		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102815075	A	A	102815075	4	1	9	1	0	0	0	0	0	1	0	0	9745	661	23	1	83	1	MMP13	11	102815075	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146988	102815075	32191441	12433	20584											
MMP13	4322	broad.mit.edu	37	chr11	102826184	102826184	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattctccttcaggattccCgcgagatttgtaggatggta	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102826184	A	A	102826184	2	1	9	1	0	0	0	0	0	0	0	1	9745	639	23	1		1	MMP13	11	102826184	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11109	102826184	32180332	12434	20585											
DYNC2H1	79659	broad.mit.edu	37	chr11	102991255	102991255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaatcatatgcctcactcGagtatttgaaccttttactg	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102991255	T	T	102991255	3	4	9	1	0	0	0	0	1	0	0	0	4886	1058	37	3	1105	3	DYNC2H1	11	102991255	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	165071	102991255	32015261	12435	20586											
DYNC2H1	79659	broad.mit.edu	37	chr11	103027385	103027385	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttgcagagttagatgaatAcctgcagaatttaaatcata	7	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103027385	T	T	103027385	3	4	9	1	0	0	0	0	1	0	0	0	4886	391	14	5	4115	5	DYNC2H1	11	103027385	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	36130	103027385	31979131	12436	20587											
DDI1	414301	broad.mit.edu	37	chr11	103907798	103907798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggacaatgtgggacctcGggctccagggcgtgccccga	16	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103907798	T	T	103907798	3	4	9	1	0	0	0	0	1	0	0	0	4361	1116	39	1	250	1	DDI1	11	103907798	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	880413	103907798	31098718	12437	20588											
DDI1	414301	broad.mit.edu	37	chr11	103908255	103908255	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcgatagaagaggccccCgagagttttggacaagtgac	13	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103908255	A	A	103908255	2	1	9	1	0	0	0	0	0	0	0	1	4361	639	23	1		1	DDI1	11	103908255	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	457	103908255	31098261	12438	20589											
CASP4	837	broad.mit.edu	37	chr11	104819443	104819443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacactgctgtgcctccCacagaatggctgtcacagtt	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104819443	A	A	104819443	1	1	9	0	1	0	0	0	0	0	0	0	2699	609	21	2		2	CASP4	11	104819443	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	911188	104819443	30187073	12439	20590											
CASP5	838	broad.mit.edu	37	chr11	104872964	104872964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagcaactttgattaccCgagtctcttttcaaccccca	5	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104872964	A	A	104872964	1	1	9	0	1	0	0	0	0	0	0	0	2700	667	23	1		1	CASP5	11	104872964	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53521	104872964	30133552	12440	20591											
CASP1	834	broad.mit.edu	37	chr11	104897574	104897574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactagcatcttaccttgcGgaaaatttcctccacatcac	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104897574	T	T	104897574	3	4	9	1	0	0	0	0	1	0	0	0	2694	1116	39	1	111	1	CASP1	11	104897574	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24610	104897574	30108942	12441	20592											
CARD16	114769	broad.mit.edu	37	chr11	104915213	104915213	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcccctttcggaataacGgagtcaatcaaagctcgggt	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104915213	T	T	104915213	2	4	9	1	0	0	0	0	0	0	0	1	2673	1103	39	1		1	CARD16	11	104915213	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17639	104915213	30091303	12442	20593											
CASP1	834	broad.mit.edu	37	chr11	104970043	104970043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacaacattaatgtcacGggaagccacggttcaaagaa	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104970043	T	T	104970043	1	4	9	0	1	0	0	0	0	0	0	0	2694	1131	39	1		1	CASP1	11	104970043	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	54830	104970043	30036473	12443	20594											
CARD17	440068	broad.mit.edu	37	chr11	104971471	104971471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccttcgcccactgaacGgataaactgctttctcttct	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104971471	T	T	104971471	3	4	9	1	0	0	0	0	1	0	0	0	2674	1116	39	1	297	1	CARD17	11	104971471	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1428	104971471	30035045	12444	20595											
CARD17	440068	broad.mit.edu	37	chr11	104971487	104971487	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacggataaactgctttctCttctccttcaggaccttgtc	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104971487	A	A	104971487	3	1	9	1	0	0	0	0	1	0	0	0	2674	912	32	3	313	3	CARD17	11	104971487	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	104971487	30035029	12445	20596											
GUCY1A2	2977	broad.mit.edu	37	chr11	106558233	106558233	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattggtgacccatgttctGggcttgtgctttttggagga	13	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106558233	T	T	106558233	1	4	9	0	1	0	0	0	0	0	0	0	6958	1363	47	2		2	GUCY1A2	11	106558233	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1586746	106558233	28448283	12446	20597											
GUCY1A2	2977	broad.mit.edu	37	chr11	106810823	106810823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaaagtgccacctacagctCgaaggactctctcattctca	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106810823	A	A	106810823	3	1	9	1	0	0	0	0	1	0	0	0	6958	884	31	3	1649	3	GUCY1A2	11	106810823	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	252590	106810823	28195693	12447	20598											
CWF19L2	143884	broad.mit.edu	37	chr11	107299549	107299549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgtagactttgtatccCgtagatgttctttttttgga	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107299549	A	A	107299549	3	1	9	1	0	0	0	0	1	0	0	0	4105	652	23	1	1319	1	CWF19L2	11	107299549	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	488726	107299549	27706967	12448	20599											
CWF19L2	143884	broad.mit.edu	37	chr11	107299688	107299688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttcttgtctcctctccCatcagagcgactccatgatg	7	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107299688	A	A	107299688	3	1	9	1	0	0	0	0	1	0	0	0	4105	594	21	2	1458	2	CWF19L2	11	107299688	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	139	107299688	27706828	12449	20600											
CUL5	8065	broad.mit.edu	37	chr11	107949048	107949048	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaggtatacaaagtaccCtgttaggtttatttttgtta	7	5	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107949048	A	A	107949048	1	1	9	0	1	0	0	0	0	0	0	0	4092	696	24	2		2	CUL5	11	107949048	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	649360	107949048	27057468	12450	20601											
CUL5	8065	broad.mit.edu	37	chr11	107965135	107965135	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaagttggtatgccagcGgattatgtaaacaagcttgc	12	6	0	0	rs140188543	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107965135	T	T	107965135	2	4	9	1	0	0	0	0	0	0	0	1	4092	1103	39	1		1	CUL5	11	107965135	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16087	107965135	27041381	12451	20602											
NPAT	4863	broad.mit.edu	37	chr11	108032248	108032248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacccccattttgctgccCaatagatagttttgaatttt	5	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108032248	A	A	108032248	3	1	9	1	0	0	0	0	1	0	0	0	10661	594	21	2	726	2	NPAT	11	108032248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67113	108032248	26974268	12452	20603											
NPAT	4863	broad.mit.edu	37	chr11	108044559	108044559	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataggatgtacaaaaagcGggctgaccagactgaccatc	11	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108044559	T	T	108044559	2	4	9	1	0	0	0	0	0	0	0	1	10661	1103	39	1		1	NPAT	11	108044559	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12311	108044559	26961957	12453	20604											
NPAT	4863	broad.mit.edu	37	chr11	108058839	108058839	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaccttttgcgtctaccGggagacattaaactggcatg	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108058839	T	T	108058839	2	4	9	1	0	0	0	0	0	0	0	1	10661	1103	39	1		1	NPAT	11	108058839	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14280	108058839	26947677	12454	20605											
ATM	472	broad.mit.edu	37	chr11	108170469	108170469	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagctgcttgggagaagtGggtcctatagatttctctac	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108170469	T	T	108170469	2	4	9	1	0	0	0	0	0	0	0	1	1113	1335	47	2		2	ATM	11	108170469	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	111630	108170469	26836047	12455	20606											
ATM	472	broad.mit.edu	37	chr11	108204678	108204678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttagaagatgttgttgtcCctactatggaaattaaggta	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108204678	A	A	108204678	3	1	9	1	0	0	0	0	1	0	0	0	1113	623	22	2	8203	2	ATM	11	108204678	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34209	108204678	26801838	12456	20607											
KDELC2	143888	broad.mit.edu	37	chr11	108345650	108345650	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattccatcacgtacttcGggtttgctggactggcgctc	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108345650	T	T	108345650	2	4	9	1	0	0	0	0	0	0	0	1	8188	1103	39	1		1	KDELC2	11	108345650	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	140972	108345650	26660866	12457	20608											
EXPH5	23086	broad.mit.edu	37	chr11	108381312	108381312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaggctcagggaacagtGggttgcactccactgtgcca	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108381312	T	T	108381312	3	4	9	1	0	0	0	0	1	0	0	0	5365	1348	47	2	1051	2	EXPH5	11	108381312	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35662	108381312	26625204	12458	20609											
EXPH5	23086	broad.mit.edu	37	chr11	108381543	108381543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagtgaaggttgatccCaagctgacttctgcatttca	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108381543	A	A	108381543	3	1	9	1	0	0	0	0	1	0	0	0	5365	595	21	2	1282	2	EXPH5	11	108381543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	231	108381543	26624973	12459	20610											
EXPH5	23086	broad.mit.edu	37	chr11	108383337	108383337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctttcattcctaaaaGgagagtgtgaatggcatttg	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108383337	T	T	108383337	3	4	9	1	0	0	0	0	1	0	0	0	5365	1000	35	2	3076	2	EXPH5	11	108383337	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1794	108383337	26623179	12460	20611											
EXPH5	23086	broad.mit.edu	37	chr11	108409842	108409842	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacgatctgaagctcatccGggaagaaaaaggtgtcggct	13	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108409842	T	T	108409842	2	4	9	1	0	0	0	0	0	0	0	1	5365	1115	39	1		1	EXPH5	11	108409842	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26505	108409842	26596674	12461	20612											
DDX10	1662	broad.mit.edu	37	chr11	108564249	108564249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttctctgtagatttccCggccgtgaattgggttcttc	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108564249	A	A	108564249	3	1	9	1	0	0	0	0	1	0	0	0	4375	652	23	1	1179	1	DDX10	11	108564249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154407	108564249	26442267	12462	20613											
ZC3H12C	85463	broad.mit.edu	37	chr11	110035818	110035818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacatgcaccctcacagcCgccttaatcctcaaccgttc	4	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110035818	A	A	110035818	3	1	9	1	0	0	0	0	1	0	0	0	17689	652	23	1	2030	1	ZC3H12C	11	110035818	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1471569	110035818	24970698	12463	20614											
ZC3H12C	85463	broad.mit.edu	37	chr11	110036118	110036118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaagaaagccttattccCgccaggaaggcctgggaagc	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110036118	A	A	110036118	3	1	9	1	0	0	0	0	1	0	0	0	17689	652	23	1	2330	1	ZC3H12C	11	110036118	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	300	110036118	24970398	12464	20615											
RDX	5962	broad.mit.edu	37	chr11	110104001	110104001	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctcatttttctgtgtttcGgttacacgttcttcctcgct	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110104001	T	T	110104001	2	4	9	1	0	0	0	0	0	0	0	1	13306	1103	39	1		1	RDX	11	110104001	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	67883	110104001	24902515	12465	20616											
RDX	5962	broad.mit.edu	37	chr11	110108401	110108401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaatatgtgtattcccccCaacagtgattaattccaatc	5	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110108401	A	A	110108401	1	1	9	0	1	0	0	0	0	0	0	0	13306	609	21	2		2	RDX	11	110108401	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4400	110108401	24898115	12466	20617											
FDX1	2230	broad.mit.edu	37	chr11	110327659	110327659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgcatgtgagggaaccCtggcttgttcaacctgtcac	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110327659	A	A	110327659	3	1	9	1	0	0	0	0	1	0	0	0	5861	680	24	2	338	2	FDX1	11	110327659	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	219258	110327659	24678857	12467	20618											
C11orf53	341032	broad.mit.edu	37	chr11	111154827	111154827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcacgtcaggttactacGgtgtcagaagatctttctta	10	9	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111154827	T	T	111154827	3	4	9	1	0	0	0	0	1	0	0	0	1660	1116	39	1	40	1	C11orf53	11	111154827	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	827168	111154827	23851689	12468	20619											
C11orf53	341032	broad.mit.edu	37	chr11	111156604	111156604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccggggtaccctacccCgcctccttaccccttcaccc	5	23	1	0	rs138944795		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111156604	A	A	111156604	3	1	9	1	0	0	0	0	1	0	0	0	1660	652	23	1	546	1	C11orf53	11	111156604	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1777	111156604	23849912	12469	20620											
SIK2	23235	broad.mit.edu	37	chr11	111594335	111594335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcagctgccccttcccCgccaggagactccaccgcct	9	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111594335	A	A	111594335	3	1	9	1	0	0	0	0	1	0	0	0	14431	652	23	1	2321	1	SIK2	11	111594335	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	437731	111594335	23412181	12470	20621											
SIK2	23235	broad.mit.edu	37	chr11	111594419	111594419	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtcctggagccttcctccGagcagatgcaatacagccct	9	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111594419	T	T	111594419	4	4	9	1	0	0	0	0	0	1	0	0	14431	1059	37	3	2405	3	SIK2	11	111594419	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84	111594419	23412097	12471	20622											
PPP2R1B	5519	broad.mit.edu	37	chr11	111625731	111625731	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgggcagcagctgcccGgacttcagcttcacagtctt	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111625731	T	T	111625731	2	4	9	1	0	0	0	0	0	0	0	1	12484	1115	39	1		1	PPP2R1B	11	111625731	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31312	111625731	23380785	12472	20623											
PPP2R1B	5519	broad.mit.edu	37	chr11	111625771	111625771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagtaggttctgaaaggcGgggatgaggtcatttagggt	16	3	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111625771	T	T	111625771	2	4	9	1	0	0	0	0	0	0	0	1	12484	1103	39	1		1	PPP2R1B	11	111625771	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40	111625771	23380745	12473	20624											
PPP2R1B	5519	broad.mit.edu	37	chr11	111636105	111636105	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttaatactgttgagtcGgagcttcagaaaagaaagta	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111636105	T	T	111636105	2	4	9	1	0	0	0	0	0	0	0	1	12484	1124	39	1		1	PPP2R1B	11	111636105	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10334	111636105	23370411	12474	20625											
ALG9	79796	broad.mit.edu	37	chr11	111724306	111724306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaataaactcctgatgttcCttttttcacatcaaagttgc	5	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111724306	A	A	111724306	1	1	9	0	1	0	0	0	0	0	0	0	524	696	24	2		2	ALG9	11	111724306	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88201	111724306	23282210	12475	20626											
ALG9	79796	broad.mit.edu	37	chr11	111724418	111724418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaatgaaagaaactcttcCacctgtgtttcatgaccagc	6	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111724418	A	A	111724418	3	1	9	1	0	0	0	0	1	0	0	0	524	595	21	2	1149	2	ALG9	11	111724418	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	112	111724418	23282098	12476	20627											
FDXACB1	91893	broad.mit.edu	37	chr11	111746332	111746332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattttgattaaccccaaGgataaataaagtttcatgaa	6	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111746332	T	T	111746332	3	4	9	1	0	0	0	0	1	0	0	0	5863	1000	35	2	689	2	FDXACB1	11	111746332	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21914	111746332	23260184	12477	20628											
FDXACB1	91893	broad.mit.edu	37	chr11	111746443	111746443	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagaggaagtctggtacttCgatgacatcctgaacatgca	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111746443	A	A	111746443	4	1	9	1	0	0	0	0	0	1	0	0	5863	893	31	3	800	3	FDXACB1	11	111746443	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111	111746443	23260073	12478	20629											
FDXACB1	91893	broad.mit.edu	37	chr11	111746748	111746748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacttcagcctttttagcGggaaaactttgcctaattca	6	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111746748	T	T	111746748	3	4	9	1	0	0	0	0	1	0	0	0	5863	1116	39	1	1105	1	FDXACB1	11	111746748	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	305	111746748	23259768	12479	20630											
FDXACB1	91893	broad.mit.edu	37	chr11	111747199	111747199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttccagcaaaataactGgttacctgttcaactttcct	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111747199	T	T	111747199	1	4	9	0	1	0	0	0	0	0	0	0	5863	1363	47	2		2	FDXACB1	11	111747199	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	451	111747199	23259317	12480	20631											
FDXACB1	91893	broad.mit.edu	37	chr11	111747261	111747261	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaaaccactggttaccCagtttgatcctgaagattct	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111747261	A	A	111747261	2	1	9	1	0	0	0	0	0	0	0	1	5863	581	21	2		2	FDXACB1	11	111747261	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	111747261	23259255	12481	20632											
FDXACB1	91893	broad.mit.edu	37	chr11	111749916	111749916	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgttttacgtcacttccttcAcggatctctctccgccccgt	6	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111749916	T	T	111749916	1	4	9	0	1	0	0	0	0	0	0	0	5863	174	6	5		5	FDXACB1	11	111749916	5'UTR	SNP	A	TCGA-05-4396-01A-21D-1855-08	2655	111749916	23256600	12482	20633											
C11orf1	64776	broad.mit.edu	37	chr11	111754522	111754522	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgagagcctcactggttccCaggacatcaacctgaactgg	11	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111754522	G	G	111754522	3	3	9	1	0	0	0	0	1	0	0	0	1640	594	21	4	385	4	C11orf1	11	111754522	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4606	111754522	23251994	12483	20634											
DIXDC1	85458	broad.mit.edu	37	chr11	111845686	111845686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagggcaacaaaggtcccCgtctgaatccagctgctcca	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111845686	A	A	111845686	3	1	9	1	0	0	0	0	1	0	0	0	4581	652	23	1	653	1	DIXDC1	11	111845686	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	91164	111845686	23160830	12484	20635											
DLAT	1737	broad.mit.edu	37	chr11	111909992	111909992	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgctgttcctccaactcccCagcctttagctcctacacct	4	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111909992	G	G	111909992	3	3	9	1	0	0	0	0	1	0	0	0	4589	595	21	4	1026	4	DLAT	11	111909992	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64306	111909992	23096524	12485	20636											
DLAT	1737	broad.mit.edu	37	chr11	111910068	111910068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagggtgtttgttagccCtcttgcaaagaagttggcag	15	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111910068	A	A	111910068	3	1	9	1	0	0	0	0	1	0	0	0	4589	681	24	2	1102	2	DLAT	11	111910068	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	111910068	23096448	12486	20637											
DLAT	1737	broad.mit.edu	37	chr11	111922035	111922035	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcatgtttaaaagttccCgaagcaaattcttcttggat	8	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111922035	A	A	111922035	2	1	9	1	0	0	0	0	0	0	0	1	4589	639	23	1		1	DLAT	11	111922035	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11967	111922035	23084481	12487	20638											
BCO2	83875	broad.mit.edu	37	chr11	112084440	112084440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatctctttcttcttccCaaacaggtccataattcagc	3	13	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112084440	A	A	112084440	1	1	9	0	1	0	0	0	0	0	0	0	1390	609	21	2		2	BCO2	11	112084440	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	162405	112084440	22922076	12488	20639											
BCO2	83875	broad.mit.edu	37	chr11	112084517	112084517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtcagtttgaatgcccCtgagggagacaacctgagtc	11	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112084517	A	A	112084517	3	1	9	1	0	0	0	0	1	0	0	0	1390	681	24	2	1299	2	BCO2	11	112084517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	112084517	22921999	12489	20640											
TTC12	54970	broad.mit.edu	37	chr11	113195366	113195366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagaaggatgcaaaggaacGagccaagagaagaagggaaa	16	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113195366	T	T	113195366	3	4	9	1	0	0	0	0	1	0	0	0	16805	1058	37	3	298	3	TTC12	11	113195366	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1110849	113195366	21811150	12490	20641											
TTC12	54970	broad.mit.edu	37	chr11	113233162	113233162	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccggaccctttcttcctctCtgaaaattgttgaggaggcc	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113233162	A	A	113233162	3	1	9	1	0	0	0	0	1	0	0	0	16805	912	32	3	1724	3	TTC12	11	113233162	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37796	113233162	21773354	12491	20642											
ZW10	9183	broad.mit.edu	37	chr11	113609089	113609089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagttcacctttctgtgccCgcatttgggccaaaaagcat	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113609089	A	A	113609089	3	1	9	1	0	0	0	0	1	0	0	0	18376	652	23	1	574	1	ZW10	11	113609089	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	375927	113609089	21397427	12492	20643											
ZW10	9183	broad.mit.edu	37	chr11	113618378	113618378	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaatctgtagtatctcCttttaaaaatctcatttcct	3	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113618378	A	A	113618378	4	1	9	1	0	0	0	0	0	1	0	0	18376	690	24	2	1224	2	ZW10	11	113618378	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9289	113618378	21388138	12493	20644											
ZW10	9183	broad.mit.edu	37	chr11	113631219	113631219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttattgcgcatgctttggGgagagcatttagtacctctt	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113631219	T	T	113631219	1	4	9	0	1	0	0	0	0	0	0	0	18376	1247	43	2		2	ZW10	11	113631219	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12841	113631219	21375297	12494	20645											
CLDN25	644672	broad.mit.edu	37	chr11	113651086	113651086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcttctcggcctgcctggGaaaagaagatgtgccttttc	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113651086	T	T	113651086	3	4	9	1	0	0	0	0	1	0	0	0	3517	1174	41	3	571	3	CLDN25	11	113651086	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19867	113651086	21355430	12495	20646											
USP28	57646	broad.mit.edu	37	chr11	113675650	113675650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggttcgttctactaccCttttgggtgcttcattttgg	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113675650	A	A	113675650	3	1	9	1	0	0	0	0	1	0	0	0	17185	681	24	2	738	2	USP28	11	113675650	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24564	113675650	21330866	12496	20647											
USP28	57646	broad.mit.edu	37	chr11	113679865	113679865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagactgctcttcttccCactcctctacttcctgctca	4	17	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113679865	A	A	113679865	3	1	9	1	0	0	0	0	1	0	0	0	17185	595	21	2	1185	2	USP28	11	113679865	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4215	113679865	21326651	12497	20648											
USP28	57646	broad.mit.edu	37	chr11	113683142	113683142	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacttgagccagctctgtcGgggttgattatagatatagg	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113683142	T	T	113683142	2	4	9	1	0	0	0	0	0	0	0	1	17185	1124	39	1		1	USP28	11	113683142	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3277	113683142	21323374	12498	20649											
USP28	57646	broad.mit.edu	37	chr11	113683251	113683251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcagaatgtacattcccCagtcaggtgaagcaaagtaa	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113683251	A	A	113683251	1	1	9	0	1	0	0	0	0	0	0	0	17185	609	21	2		2	USP28	11	113683251	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	109	113683251	21323265	12499	20650											
USP28	57646	broad.mit.edu	37	chr11	113704162	113704162	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgttcctcagatgatcGgaatgctccctttaatagat	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113704162	T	T	113704162	2	4	9	1	0	0	0	0	0	0	0	1	17185	1124	39	1		1	USP28	11	113704162	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20911	113704162	21302354	12500	20651											
USP28	57646	broad.mit.edu	37	chr11	113711322	113711322	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttaaaaatatcatacctGaataacagcactaaaccaac	2	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113711322	A	A	113711322	4	1	9	1	0	0	0	0	0	1	0	0	17185	1299	45	4	2785	4	USP28	11	113711322	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7160	113711322	21295194	12501	20652											
USP28	57646	broad.mit.edu	37	chr11	113725031	113725031	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaatgcctgtgatttctctCagttgatttaacagcatttg	8	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113725031	A	A	113725031	2	1	9	1	0	0	0	0	0	0	0	1	17185	813	29	3		3	USP28	11	113725031	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13709	113725031	21281485	12502	20653											
NNMT	4837	broad.mit.edu	37	chr11	114168843	114168843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggcctttgactggtccCcagtggtgacctatgtgtgt	13	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114168843	A	A	114168843	3	1	9	1	0	0	0	0	1	0	0	0	10604	623	22	2	331	2	NNMT	11	114168843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	443812	114168843	20837673	12503	20654											
C11orf71	54494	broad.mit.edu	37	chr11	114270942	114270942	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacgaggaagccgtctcCggagaccatcgccaacgctg	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114270942	A	A	114270942	4	1	9	1	0	0	0	0	0	1	0	0	1672	661	23	1	339	1	C11orf71	11	114270942	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102099	114270942	20735574	12504	20655											
REXO2	25996	broad.mit.edu	37	chr11	114320614	114320614	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagagcttcagttttacCgaaataacatcttcaagaaa	5	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114320614	A	A	114320614	2	1	9	1	0	0	0	0	0	0	0	1	13350	644	23	1		1	REXO2	11	114320614	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49672	114320614	20685902	12505	20656											
FAM55D	54827	broad.mit.edu	37	chr11	114441950	114441950	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggacattgagggcccttcGgataaaaacatcaatgggaa	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114441950	T	T	114441950	2	4	9	1	0	0	0	0	0	0	0	1	5638	1124	39	1		1	FAM55D	11	114441950	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	121336	114441950	20564566	12506	20657											
CADM1	23705	broad.mit.edu	37	chr11	115049428	115049428	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatggcgaacaccaccacCgccacgacgccaccgatcac	8	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115049428	A	A	115049428	2	1	9	1	0	0	0	0	0	0	0	1	2592	639	23	1		1	CADM1	11	115049428	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	607478	115049428	19957088	12507	20658											
CADM1	23705	broad.mit.edu	37	chr11	115080408	115080408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaggaaaatcaaaccCacaatgctgaacacaacaat	4	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115080408	A	A	115080408	1	1	9	0	1	0	0	0	0	0	0	0	2592	609	21	2		2	CADM1	11	115080408	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30980	115080408	19926108	12508	20659											
BUD13	84811	broad.mit.edu	37	chr11	116628596	116628596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcgtcatcaatatagcGggccagaggcttttgcatct	9	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116628596	T	T	116628596	3	4	9	1	0	0	0	0	1	0	0	0	1583	1116	39	1	301	1	BUD13	11	116628596	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1548188	116628596	18377920	12509	20660											
BUD13	84811	broad.mit.edu	37	chr11	116631482	116631482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgactccttcgaggcGgggacaggtcagaatcagaa	15	9	2	3	rs61730763	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116631482	T	T	116631482	3	4	9	1	0	0	0	0	1	0	0	0	1583	1116	39	1	660	1	BUD13	11	116631482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2886	116631482	18375034	12510	20661											
BUD13	84811	broad.mit.edu	37	chr11	116633503	116633503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatcaggggagtcatgacGggcccttctgagttgctgtg	14	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116633503	T	T	116633503	3	4	9	1	0	0	0	0	1	0	0	0	1583	1116	39	1	1085	1	BUD13	11	116633503	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2021	116633503	18373013	12511	20662											
BUD13	84811	broad.mit.edu	37	chr11	116633547	116633547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagagccaagagtcctcCtagatgtgtcaggggagttg	14	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116633547	A	A	116633547	3	1	9	1	0	0	0	0	1	0	0	0	1583	681	24	2	1129	2	BUD13	11	116633547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	116633547	18372969	12512	20663											
ZNF259	8882	broad.mit.edu	37	chr11	116656259	116656259	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatctcttcctgctgtcGggtccggttgtagtgtgtga	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116656259	T	T	116656259	2	4	9	1	0	0	0	0	0	0	0	1	17927	1124	39	1		1	ZNF259	11	116656259	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22712	116656259	18350257	12513	20664											
ZNF259	8882	broad.mit.edu	37	chr11	116657653	116657653	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaagattctagctacatgcGaacagcccaaatactctgat	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116657653	T	T	116657653	1	4	9	0	1	0	0	0	0	0	0	0	17927	1073	37	3		3	ZNF259	11	116657653	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1394	116657653	18348863	12514	20665											
APOA4	337	broad.mit.edu	37	chr11	116691775	116691775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggccttccacgtccccCgcatgggggcccagtttctg	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116691775	A	A	116691775	2	1	9	1	0	0	0	0	0	0	0	1	785	639	23	1		1	APOA4	11	116691775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34122	116691775	18314741	12515	20666											
APOA4	337	broad.mit.edu	37	chr11	116692268	116692268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggctgtcggcgttctccCgcagcactctctccatgcgc	11	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116692268	A	A	116692268	3	1	9	1	0	0	0	0	1	0	0	0	785	652	23	1	688	1	APOA4	11	116692268	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	493	116692268	18314248	12516	20667											
APOA4	337	broad.mit.edu	37	chr11	116693247	116693247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctaggttcagaggcccGgccagttagtggcagggcag	16	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116693247	T	T	116693247	1	4	9	0	1	0	0	0	0	0	0	0	785	1131	39	1		1	APOA4	11	116693247	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	979	116693247	18313269	12517	20668											
APOA4	337	broad.mit.edu	37	chr11	116693344	116693344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcctttaagaattcccCgtcaccaccgcacactgtag	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116693344	A	A	116693344	1	1	9	0	1	0	0	0	0	0	0	0	785	667	23	1		1	APOA4	11	116693344	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	97	116693344	18313172	12518	20669											
APOA1	335	broad.mit.edu	37	chr11	116707737	116707737	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagctgttttcccaaggcGgagccttcaaactgggacac	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116707737	T	T	116707737	2	4	9	1	0	0	0	0	0	0	0	1	782	1103	39	1		1	APOA1	11	116707737	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14393	116707737	18298779	12519	20670											
APOA1	335	broad.mit.edu	37	chr11	116707809	116707809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtacacagtggccaggtcCttcactcgatcccaggggct	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116707809	A	A	116707809	3	1	9	1	0	0	0	0	1	0	0	0	782	680	24	2	703	2	APOA1	11	116707809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	116707809	18298707	12520	20671											
SIK3	23387	broad.mit.edu	37	chr11	116718256	116718256	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgactgagaactgcatcCgacatccgggcagagctaag	12	11	0	3	rs139869704	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116718256	A	A	116718256	2	1	9	1	0	0	0	0	0	0	0	1	14432	639	23	1		1	SIK3	11	116718256	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10447	116718256	18288260	12521	20672											
SIK3	23387	broad.mit.edu	37	chr11	116728793	116728793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccggctggtgagcataccCgtggggcggggtgggtgagg	22	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116728793	A	A	116728793	3	1	9	1	0	0	0	0	1	0	0	0	14432	652	23	1	737	1	SIK3	11	116728793	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10537	116728793	18277723	12522	20673											
SIK3	23387	broad.mit.edu	37	chr11	116731985	116731985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttggtctgaacctctccaCtcaccgtgaggctggatcat	10	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116731985	A	A	116731985	1	1	9	0	1	0	0	0	0	0	0	0	14432	580	20	3		3	SIK3	11	116731985	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3192	116731985	18274531	12523	20674											
SIK3	23387	broad.mit.edu	37	chr11	116798006	116798006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacgatgaacaatgttcCgacagtgacaaaaatagaca	7	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116798006	A	A	116798006	3	1	9	1	0	0	0	0	1	0	0	0	14432	652	23	1	3500	1	SIK3	11	116798006	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66021	116798006	18208510	12524	20675											
SIK3	23387	broad.mit.edu	37	chr11	116827583	116827583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtcacagatgttcaccCacccacatttcttcaaaggg	6	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116827583	A	A	116827583	1	1	9	0	1	0	0	0	0	0	0	0	14432	609	21	2		2	SIK3	11	116827583	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29577	116827583	18178933	12525	20676											
SIDT2	51092	broad.mit.edu	37	chr11	117063831	117063831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcacttccttgcccttGggcttcctgcttcaccaccc	7	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117063831	T	T	117063831	1	4	9	0	1	0	0	0	0	0	0	0	14416	1363	47	2		2	SIDT2	11	117063831	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	236248	117063831	17942685	12526	20677											
TAGLN	6876	broad.mit.edu	37	chr11	117075049	117075049	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccggcatgacaggctacGgacgacctcggcagatcatc	13	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117075049	T	T	117075049	4	4	9	1	0	0	0	0	0	1	0	0	15657	1117	39	1	594	1	TAGLN	11	117075049	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11218	117075049	17931467	12527	20678											
PCSK7	9159	broad.mit.edu	37	chr11	117100059	117100059	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactggactggaacctaccCacctgaaactgcaaactgca	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117100059	A	A	117100059	1	1	9	0	1	0	0	0	0	0	0	0	11699	609	21	2		2	PCSK7	11	117100059	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25010	117100059	17906457	12528	20679											
PCSK7	9159	broad.mit.edu	37	chr11	117100148	117100148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggacgctgcgcttggccCgccttagcagcctctgctct	12	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117100148	A	A	117100148	3	1	9	1	0	0	0	0	1	0	0	0	11699	652	23	1	2004	1	PCSK7	11	117100148	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89	117100148	17906368	12529	20680											
RNF214	257160	broad.mit.edu	37	chr11	117109359	117109359	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaagaactcgcctctgttGagtgtaagtagccaaacaat	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117109359	T	T	117109359	3	4	9	1	0	0	0	0	1	0	0	0	13589	1281	45	3	156	3	RNF214	11	117109359	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9211	117109359	17897157	12530	20681											
RNF214	257160	broad.mit.edu	37	chr11	117109606	117109606	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagcctccatccagtcactCggtctcttaaggcagggtgc	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117109606	A	A	117109606	2	1	9	1	0	0	0	0	0	0	0	1	13589	875	31	3		3	RNF214	11	117109606	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	247	117109606	17896910	12531	20682											
RNF214	257160	broad.mit.edu	37	chr11	117152352	117152352	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatccagttagtgaggaacGgagccaagctgagcagcctt	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117152352	T	T	117152352	4	4	9	1	0	0	0	0	0	1	0	0	13589	1117	39	1	1307	1	RNF214	11	117152352	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42746	117152352	17854164	12532	20683											
RNF214	257160	broad.mit.edu	37	chr11	117152676	117152676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggatgcccttctccattGggcaggtcacaatgcccatg	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117152676	T	T	117152676	3	4	9	1	0	0	0	0	1	0	0	0	13589	1348	47	2	1440	2	RNF214	11	117152676	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	324	117152676	17853840	12533	20684											
RNF214	257160	broad.mit.edu	37	chr11	117153072	117153072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttacatgggtgttcccCgtgggtatagcataggcttt	14	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117153072	A	A	117153072	1	1	9	0	1	0	0	0	0	0	0	0	13589	667	23	1		1	RNF214	11	117153072	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	396	117153072	17853444	12534	20685											
BACE1	23621	broad.mit.edu	37	chr11	117161763	117161763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccatcagggaacttctcCgtctgtgttggcaagaaggg	12	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117161763	A	A	117161763	2	1	9	1	0	0	0	0	0	0	0	1	1286	639	23	1		1	BACE1	11	117161763	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8691	117161763	17844753	12535	20686											
BACE1	23621	broad.mit.edu	37	chr11	117163813	117163813	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtccattgatctccaccCgcacaatgatcacctcataa	4	16	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117163813	G	G	117163813	3	3	9	1	0	0	0	0	1	0	0	0	1286	652	23	4	728	4	BACE1	11	117163813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2050	117163813	17842703	12536	20687											
BACE1	23621	broad.mit.edu	37	chr11	117163843	117163843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctcataataccactccCgccggatgggtgtataccag	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117163843	A	A	117163843	3	1	9	1	0	0	0	0	1	0	0	0	1286	652	23	1	758	1	BACE1	11	117163843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	117163843	17842673	12537	20688											
CEP164	22897	broad.mit.edu	37	chr11	117280347	117280347	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttcagtcgactcaaccccGagtctcacctcccgcaagat	6	17	3	1	rs142802684		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117280347	T	T	117280347	2	4	9	1	0	0	0	0	0	0	0	1	3279	1045	37	3		3	CEP164	11	117280347	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	116504	117280347	17726169	12538	20689											
DSCAML1	57453	broad.mit.edu	37	chr11	117307865	117307865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtccagggtggcgaactGggctgtttcattgccgcagc	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117307865	T	T	117307865	3	4	9	1	0	0	0	0	1	0	0	0	4809	1357	47	2	1500	2	DSCAML1	11	117307865	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27518	117307865	17698651	12539	20690											
DSCAML1	57453	broad.mit.edu	37	chr11	117391915	117391915	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaagcactggtaggccccGgaatggctcttctgggccga	15	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117391915	T	T	117391915	2	4	9	1	0	0	0	0	0	0	0	1	4809	1103	39	1		1	DSCAML1	11	117391915	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	84050	117391915	17614601	12540	20691											
TMPRSS13	84000	broad.mit.edu	37	chr11	117785149	117785149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttgcagtccaccacccCgtcacagcgaacagcgtgct	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117785149	A	A	117785149	3	1	9	1	0	0	0	0	1	0	0	0	16368	652	23	1	1106	1	TMPRSS13	11	117785149	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	393234	117785149	17221367	12541	20692											
IL10RA	3587	broad.mit.edu	37	chr11	117870293	117870293	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccccaggtggtctcctGggcagctttaactcagacct	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117870293	T	T	117870293	2	4	9	1	0	0	0	0	0	0	0	1	7690	1335	47	2		2	IL10RA	11	117870293	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85144	117870293	17136223	12542	20693											
TMPRSS4	56649	broad.mit.edu	37	chr11	117969827	117969827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcagtaagtgacagccCgtacccgactttcaccctct	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117969827	A	A	117969827	1	1	9	0	1	0	0	0	0	0	0	0	16372	667	23	1		1	TMPRSS4	11	117969827	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	99534	117969827	17036689	12543	20694											
TMPRSS4	56649	broad.mit.edu	37	chr11	117973851	117973851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatactacttcctctgcGggcagcctctccacttcatc	5	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117973851	T	T	117973851	3	4	9	1	0	0	0	0	1	0	0	0	16372	1116	39	1	207	1	TMPRSS4	11	117973851	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4024	117973851	17032665	12544	20695											
SCN4B	6330	broad.mit.edu	37	chr11	118011931	118011931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaactcacttcttctccCgagtcttcttcaggatgaag	7	12	7	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118011931	A	A	118011931	3	1	9	1	0	0	0	0	1	0	0	0	14034	652	23	1	110	1	SCN4B	11	118011931	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38080	118011931	16994585	12545	20696											
SCN2B	6327	broad.mit.edu	37	chr11	118037853	118037853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggaaaggggcctcccCcatcaccccactacccgtgg	12	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118037853	A	A	118037853	1	1	9	0	1	0	0	0	0	0	0	0	14030	638	22	2		2	SCN2B	11	118037853	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25922	118037853	16968663	12546	20697											
AMICA1	120425	broad.mit.edu	37	chr11	118067508	118067508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcctcgatcacctccCgtacaattattggggagtaa	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118067508	A	A	118067508	3	1	9	1	0	0	0	0	1	0	0	0	574	652	23	1	158	1	AMICA1	11	118067508	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29655	118067508	16939008	12547	20698											
MPZL3	196264	broad.mit.edu	37	chr11	118106197	118106197	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcctcttcttcagccCagcagccttcctccccattc	4	21	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118106197	G	G	118106197	3	3	9	1	0	0	0	0	1	0	0	0	9845	594	21	4	160	4	MPZL3	11	118106197	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38689	118106197	16900319	12548	20699											
MPZL2	10205	broad.mit.edu	37	chr11	118128088	118128088	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaagcaagtgggtaaatccCacagaagcttcaggtaaggt	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118128088	G	G	118128088	1	3	9	0	1	0	0	0	0	0	0	0	9844	609	21	4		4	MPZL2	11	118128088	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21891	118128088	16878428	12549	20700											
MPZL2	10205	broad.mit.edu	37	chr11	118130801	118130801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accactttatgagctctttcGgcccatcgctttttccggta	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118130801	T	T	118130801	2	4	9	1	0	0	0	0	0	0	0	1	9844	1103	39	1		1	MPZL2	11	118130801	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2713	118130801	16875715	12550	20701											
CD3E	916	broad.mit.edu	37	chr11	118175656	118175656	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttagtaaagtaacagtccCatgaaacaaagatgcagtcg	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118175656	A	A	118175656	1	1	9	0	1	0	0	0	0	0	0	0	3041	609	21	2		2	CD3E	11	118175656	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	44855	118175656	16830860	12551	20702											
UBE4A	9354	broad.mit.edu	37	chr11	118239364	118239364	+	Missense_Mutation	SNP	C	A	A													agatgaactcccagctagccCagatgactcggataatagcg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118239364	A	A	118239364	3	1	9	1	0	0	0	0	1	0	0	0	17008	594	21	2	146	2	UBE4A	11	118239364	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63708	118239364	16767152	12552	20703	138	2									
UBE4A	9354	broad.mit.edu	37	chr11	118239374	118239374	+	Silent	SNP	G	T	T													ccagctagcccagatgactcGgataatagcgtgtcagagag					rs142300826		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118239374	T	T	118239374	2	4	9	1	0	0	0	0	0	0	0	1	17008	1103	39	1		1	UBE4A	11	118239374	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	118239374	16767142	12553	20704	138	2									
UBE4A	9354	broad.mit.edu	37	chr11	118250220	118250220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggctgcaggttgcctggcGggatgctcagcaaagttcta	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118250220	T	T	118250220	3	4	9	1	0	0	0	0	1	0	0	0	17008	1116	39	1	1690	1	UBE4A	11	118250220	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10846	118250220	16756296	12554	20705											
UBE4A	9354	broad.mit.edu	37	chr11	118252147	118252147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgattttctcatttttctcCgccgctttgccgatgacatt	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118252147	A	A	118252147	3	1	9	1	0	0	0	0	1	0	0	0	17008	652	23	1	1981	1	UBE4A	11	118252147	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1927	118252147	16754369	12555	20706											
UBE4A	9354	broad.mit.edu	37	chr11	118260525	118260525	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaacacctggttggcccCaagatgggtgccttaaaagt	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118260525	A	A	118260525	2	1	9	1	0	0	0	0	0	0	0	1	17008	581	21	2		2	UBE4A	11	118260525	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8378	118260525	16745991	12556	20707											
UBE4A	9354	broad.mit.edu	37	chr11	118260577	118260577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaatttgacttcaaacccCagcagcttgtatcagatatc	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118260577	A	A	118260577	3	1	9	1	0	0	0	0	1	0	0	0	17008	595	21	2	2808	2	UBE4A	11	118260577	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	118260577	16745939	12557	20708											
MLL	4297	broad.mit.edu	37	chr11	118342931	118342931	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagttgtcagacaaagccctCgaaggattaagccagttagg	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118342931	A	A	118342931	2	1	9	1	0	0	0	0	0	0	0	1	9713	876	31	3		3	MLL	11	118342931	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82354	118342931	16663585	12558	20709											
MLL	4297	broad.mit.edu	37	chr11	118348727	118348727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgctgaacctcttgctcCacccatcaaaccaattaaac	4	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118348727	A	A	118348727	3	1	9	1	0	0	0	0	1	0	0	0	9713	594	21	2	3398	2	MLL	11	118348727	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5796	118348727	16657789	12559	20710											
MLL	4297	broad.mit.edu	37	chr11	118348771	118348771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactagaaacaaggcacccCaggaacctccagtaaagaaa	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118348771	A	A	118348771	3	1	9	1	0	0	0	0	1	0	0	0	9713	595	21	2	3442	2	MLL	11	118348771	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	118348771	16657745	12560	20711											
MLL	4297	broad.mit.edu	37	chr11	118368741	118368741	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtttgaagatgatgacGgatcactaaagaatgtgcat	11	4	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118368741	T	T	118368741	4	4	9	1	0	0	0	0	0	1	0	0	9713	1117	39	1	5828	1	MLL	11	118368741	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19970	118368741	16637775	12561	20712											
TTC36	143941	broad.mit.edu	37	chr11	118398265	118398265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttcaaccctgacacccCatttggagacattgttggat	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118398265	A	A	118398265	3	1	9	1	0	0	0	0	1	0	0	0	16830	594	21	2	58	2	TTC36	11	118398265	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29524	118398265	16608251	12562	20713											
IFT46	56912	broad.mit.edu	37	chr11	118431720	118431720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactggcctgctgctggccCgcaggcttcccaataggttt	12	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118431720	A	A	118431720	1	1	9	0	1	0	0	0	0	0	0	0	7630	667	23	1		1	IFT46	11	118431720	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33455	118431720	16574796	12563	20714											
ARCN1	372	broad.mit.edu	37	chr11	118452033	118452033	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtttgtggaaatgaccCgaactcggattgagggctta	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118452033	A	A	118452033	2	1	9	1	0	0	0	0	0	0	0	1	844	644	23	1		1	ARCN1	11	118452033	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20313	118452033	16554483	12564	20715											
PHLDB1	23187	broad.mit.edu	37	chr11	118486844	118486844	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacatcgagaacctgcgGggcaccctcaccctctaccc	8	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118486844	T	T	118486844	2	4	9	1	0	0	0	0	0	0	0	1	11946	1219	43	2		2	PHLDB1	11	118486844	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34811	118486844	16519672	12565	20716											
PHLDB1	23187	broad.mit.edu	37	chr11	118520797	118520797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcacgacccctgaccCgctacctgccaatccggaag	9	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118520797	A	A	118520797	3	1	9	1	0	0	0	0	1	0	0	0	11946	652	23	1	3740	1	PHLDB1	11	118520797	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33953	118520797	16485719	12566	20717											
CXCR5	643	broad.mit.edu	37	chr11	118764418	118764418	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaggccgtgttcgtgccCgtggcctacagcctcatctt	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118764418	A	A	118764418	2	1	9	1	0	0	0	0	0	0	0	1	4127	639	23	1		1	CXCR5	11	118764418	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	243621	118764418	16242098	12567	20718											
BCL9L	283149	broad.mit.edu	37	chr11	118778158	118778158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcccccaggaacatcacGggctacagcaccctggcatc	8	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118778158	T	T	118778158	1	4	9	0	1	0	0	0	0	0	0	0	1387	1131	39	1		1	BCL9L	11	118778158	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13740	118778158	16228358	12568	20719											
FOXR1	283150	broad.mit.edu	37	chr11	118851229	118851229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctttttccggacggcccCggaaggctggaagaatactg	12	13	0	1	rs139682868		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118851229	A	A	118851229	3	1	9	1	0	0	0	0	1	0	0	0	6091	652	23	1	659	1	FOXR1	11	118851229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73071	118851229	16155287	12569	20720											
VPS11	55823	broad.mit.edu	37	chr11	118951915	118951915	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acactgctttgagagttactCggaaagtgatgctgactgcc	11	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118951915	A	A	118951915	4	1	9	1	0	0	0	0	0	1	0	0	17315	893	31	3	2609	3	VPS11	11	118951915	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100686	118951915	16054601	12570	20721											
HMBS	3145	broad.mit.edu	37	chr11	118958978	118958978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaggaagaaaacagccCaaagatgagagtgattcgcg	12	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118958978	A	A	118958978	3	1	9	1	0	0	0	0	1	0	0	0	7286	594	21	2	53	2	HMBS	11	118958978	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7063	118958978	16047538	12571	20722											
HMBS	3145	broad.mit.edu	37	chr11	118959362	118959362	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttgctcgcatacagacGgacagtgtggtggcaacatt	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118959362	T	T	118959362	2	4	9	1	0	0	0	0	0	0	0	1	7286	1103	39	1		1	HMBS	11	118959362	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	384	118959362	16047154	12572	20723											
DPAGT1	1798	broad.mit.edu	37	chr11	118972188	118972188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgccccctgcccggaccCgtgtgccgctgctcacatct	9	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118972188	A	A	118972188	1	1	9	0	1	0	0	0	0	0	0	0	4750	667	23	1		1	DPAGT1	11	118972188	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	12826	118972188	16034328	12573	20724											
HINFP	25988	broad.mit.edu	37	chr11	118997602	118997602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgccctcagcagcacctGggtggaattcttgcagctgt	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118997602	T	T	118997602	1	4	9	0	1	0	0	0	0	0	0	0	7177	1363	47	2		2	HINFP	11	118997602	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25414	118997602	16008914	12574	20725											
HINFP	25988	broad.mit.edu	37	chr11	119002333	119002333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtcggcaaggacaaccCggtggtgctgtgtggctgga	17	9	0	0	rs145155341		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119002333	A	A	119002333	3	1	9	1	0	0	0	0	1	0	0	0	7177	652	23	1	510	1	HINFP	11	119002333	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4731	119002333	16004183	12575	20726											
HINFP	25988	broad.mit.edu	37	chr11	119002713	119002713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtagtcagaggaagtgGggtggatgcaggctgtcctg	18	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119002713	T	T	119002713	1	4	9	0	1	0	0	0	0	0	0	0	7177	1247	43	2		2	HINFP	11	119002713	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	380	119002713	16003803	12576	20727											
HINFP	25988	broad.mit.edu	37	chr11	119003668	119003668	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactgcaccttcagtgccCgatccctctgctctatcaag	7	15	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119003668	A	A	119003668	2	1	9	1	0	0	0	0	0	0	0	1	7177	644	23	1		1	HINFP	11	119003668	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	955	119003668	16002848	12577	20728											
ABCG4	64137	broad.mit.edu	37	chr11	119025669	119025669	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaggatacccctctcctctCggccctgagccagggctgga	11	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119025669	A	A	119025669	1	1	9	0	1	0	0	0	0	0	0	0	70	899	31	3		3	ABCG4	11	119025669	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22001	119025669	15980847	12578	20729											
ABCG4	64137	broad.mit.edu	37	chr11	119027348	119027348	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcccctatctaaagggactCggcttgcattgccccaccta	7	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119027348	A	A	119027348	2	1	9	1	0	0	0	0	0	0	0	1	70	871	31	3		3	ABCG4	11	119027348	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1679	119027348	15979168	12579	20730											
ABCG4	64137	broad.mit.edu	37	chr11	119028883	119028883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttttcattcactgagctGggtgttctgtgggtgaatgg	15	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119028883	T	T	119028883	1	4	9	0	1	0	0	0	0	0	0	0	70	1363	47	2		2	ABCG4	11	119028883	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1535	119028883	15977633	12580	20731											
ABCG4	64137	broad.mit.edu	37	chr11	119028949	119028949	+	Silent	SNP	G	T	T													atttcttcttcccaggaagtGgatcccattgaaagccacac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119028949	T	T	119028949	2	4	9	1	0	0	0	0	0	0	0	1	70	1335	47	2		2	ABCG4	11	119028949	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66	119028949	15977567	12581	20732	139	2									
ABCG4	64137	broad.mit.edu	37	chr11	119028955	119028955	+	Silent	SNP	C	A	A													tcttcccaggaagtggatccCattgaaagccacacctttgc					rs142680859		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119028955	A	A	119028955	2	1	9	1	0	0	0	0	0	0	0	1	70	581	21	2		2	ABCG4	11	119028955	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6	119028955	15977561	12582	20733	139	2									
ABCG4	64137	broad.mit.edu	37	chr11	119029027	119029027	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagaggaccttcctgtcCatcctcagggacacggtgag	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119029027	A	A	119029027	2	1	9	1	0	0	0	0	0	0	0	1	70	581	21	2		2	ABCG4	11	119029027	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	119029027	15977489	12583	20734											
ABCG4	64137	broad.mit.edu	37	chr11	119029283	119029283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtcctgacccacctacGgttcatgtcccacgtggtta	9	14	1	1	rs149710791		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119029283	T	T	119029283	3	4	9	1	0	0	0	0	1	0	0	0	70	1116	39	1	1222	1	ABCG4	11	119029283	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	256	119029283	15977233	12584	20735											
ABCG4	64137	broad.mit.edu	37	chr11	119031129	119031129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgggaattcccaaggcGggatgaggtcttgtgggagg	18	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119031129	T	T	119031129	1	4	9	0	1	0	0	0	0	0	0	0	70	1131	39	1		1	ABCG4	11	119031129	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1846	119031129	15975387	12585	20736											
NLRX1	79671	broad.mit.edu	37	chr11	119042120	119042120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctttcccaggatgaggtGgggccaccatttgcccaggg	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119042120	T	T	119042120	3	4	9	1	0	0	0	0	1	0	0	0	10580	1357	47	2	10	2	NLRX1	11	119042120	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10991	119042120	15964396	12586	20737											
CCDC153	283152	broad.mit.edu	37	chr11	119061465	119061465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtctgccatgtgggccCgaagctgagccagggcctgg	15	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119061465	A	A	119061465	3	1	9	1	0	0	0	0	1	0	0	0	2814	652	23	1	206	1	CCDC153	11	119061465	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19345	119061465	15945051	12587	20738											
CBL	867	broad.mit.edu	37	chr11	119103248	119103248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatacctaccagcatctcCgtactatcttgtcaagatat	5	12	3	2	rs147438359		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119103248	A	A	119103248	3	1	9	1	0	0	0	0	1	0	0	0	2726	652	23	1	292	1	CBL	11	119103248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41783	119103248	15903268	12588	20739											
CBL	867	broad.mit.edu	37	chr11	119149290	119149290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacccatcgtggtagatcCgtttgatcctagagggagtg	13	8	0	4	rs140627020		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119149290	A	A	119149290	3	1	9	1	0	0	0	0	1	0	0	0	2726	652	23	1	1332	1	CBL	11	119149290	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46042	119149290	15857226	12589	20740											
CBL	867	broad.mit.edu	37	chr11	119170404	119170404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacatccagaaagctttGgtcattgcccagaacaacat	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119170404	T	T	119170404	3	4	9	1	0	0	0	0	1	0	0	0	2726	1339	47	2	2696	2	CBL	11	119170404	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21114	119170404	15836112	12590	20741											
CBL	867	broad.mit.edu	37	chr11	119170426	119170426	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcattgcccagaacaacatcGagatggccaaaaacatcctc	6	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119170426	T	T	119170426	4	4	9	1	0	0	0	0	0	1	0	0	2726	1059	37	3	2718	3	CBL	11	119170426	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	119170426	15836090	12591	20742											
CBL	867	broad.mit.edu	37	chr11	119170448	119170448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggccaaaaacatcctccGggaatttgtttccatttctt	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119170448	T	T	119170448	3	4	9	1	0	0	0	0	1	0	0	0	2726	1116	39	1	2740	1	CBL	11	119170448	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	119170448	15836068	12592	20743											
MCAM	4162	broad.mit.edu	37	chr11	119183355	119183355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccacactttttctgtcGggtctgcataggcaaagggg	12	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119183355	T	T	119183355	3	4	9	1	0	0	0	0	1	0	0	0	9461	1116	39	1	1237	1	MCAM	11	119183355	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12907	119183355	15823161	12593	20744											
USP2	9099	broad.mit.edu	37	chr11	119228442	119228442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccttgaaagtcatgtccCagccctgatggatcttaagg	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119228442	A	A	119228442	1	1	9	0	1	0	0	0	0	0	0	0	17177	609	21	2		2	USP2	11	119228442	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45087	119228442	15778074	12594	20745											
USP2	9099	broad.mit.edu	37	chr11	119228517	119228517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaacttctttatacacCgttttctgcctcggcagcga	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119228517	A	A	119228517	3	1	9	1	0	0	0	0	1	0	0	0	17177	652	23	1	382	1	USP2	11	119228517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	119228517	15777999	12595	20746											
USP2	9099	broad.mit.edu	37	chr11	119229503	119229503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgatcctactgtcttccCgttctagatattttctccac	4	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119229503	A	A	119229503	3	1	9	1	0	0	0	0	1	0	0	0	17177	652	23	1	628	1	USP2	11	119229503	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	986	119229503	15777013	12596	20747											
PVRL1	5818	broad.mit.edu	37	chr11	119545242	119545242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggggggccctgtccaGggtcacagctgtctgacatc	17	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119545242	T	T	119545242	1	4	9	0	1	0	0	0	0	0	0	0	12947	1015	35	2		2	PVRL1	11	119545242	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	315739	119545242	15461274	12597	20748											
PVRL1	5818	broad.mit.edu	37	chr11	119545335	119545335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttgtcctccctttgccCggatagataagttgacagaa	9	11	1	3	rs58471168	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119545335	A	A	119545335	1	1	9	0	1	0	0	0	0	0	0	0	12947	639	23	1		1	PVRL1	11	119545335	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	119545335	15461181	12598	20749											
TRIM29	23650	broad.mit.edu	37	chr11	119998088	119998088	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctatgcagctgctcccGggtctgcttgtcctcatgca	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119998088	T	T	119998088	2	4	9	1	0	0	0	0	0	0	0	1	16627	1115	39	1		1	TRIM29	11	119998088	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	452753	119998088	15008428	12599	20750											
TRIM29	23650	broad.mit.edu	37	chr11	119999069	119999069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccaggcaggccaggtcGggtaagggagcagcaaggtg	17	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119999069	T	T	119999069	1	4	9	0	1	0	0	0	0	0	0	0	16627	1131	39	1		1	TRIM29	11	119999069	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	981	119999069	15007447	12600	20751											
TRIM29	23650	broad.mit.edu	37	chr11	120008375	120008375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcagctcgcccttttcgGcaaaggtaacgggtggcttc	13	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120008375	T	T	120008375	3	4	9	1	0	0	0	0	1	0	0	0	16627	1203	42	3	1437	3	TRIM29	11	120008375	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9306	120008375	14998141	12601	20752											
POU2F3	25833	broad.mit.edu	37	chr11	120168853	120168853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagcccagtaggccctGggctagctctctcctctcta	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120168853	T	T	120168853	1	4	9	0	1	0	0	0	0	0	0	0	12369	1363	47	2		2	POU2F3	11	120168853	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	160478	120168853	14837663	12602	20753											
ARHGEF12	23365	broad.mit.edu	37	chr11	120329949	120329949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatcaagtgttctatcagcGagtatccagagaaggaattc	10	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120329949	T	T	120329949	3	4	9	1	0	0	0	0	1	0	0	0	899	1058	37	3	2549	3	ARHGEF12	11	120329949	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	161096	120329949	14676567	12603	20754											
GRIK4	2900	broad.mit.edu	37	chr11	120702672	120702672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctcctcaaggagatccGggacgacaagaccgccacca	10	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120702672	T	T	120702672	3	4	9	1	0	0	0	0	1	0	0	0	6842	1116	39	1	641	1	GRIK4	11	120702672	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	372723	120702672	14303844	12604	20755											
GRIK4	2900	broad.mit.edu	37	chr11	120732721	120732721	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgatcgtgtcaacatcctGggattttccattttcaacca	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120732721	T	T	120732721	2	4	9	1	0	0	0	0	0	0	0	1	6842	1335	47	2		2	GRIK4	11	120732721	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30049	120732721	14273795	12605	20756											
GRIK4	2900	broad.mit.edu	37	chr11	120776023	120776023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccatatttaatgctgaagGggaaccaccaggagatggaa	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120776023	T	T	120776023	3	4	9	1	0	0	0	0	1	0	0	0	6842	1232	43	2	1339	2	GRIK4	11	120776023	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43302	120776023	14230493	12606	20757											
GRIK4	2900	broad.mit.edu	37	chr11	120776131	120776131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacaagatccgcctggttGgggatggcgtgtacggcgtt	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120776131	T	T	120776131	3	4	9	1	0	0	0	0	1	0	0	0	6842	1348	47	2	1447	2	GRIK4	11	120776131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108	120776131	14230385	12607	20758											
TECTA	7007	broad.mit.edu	37	chr11	120984305	120984305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaatttcttcagcctccCggggtcaagaacccccgaga	8	16	3	2	rs141580993		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120984305	A	A	120984305	3	1	9	1	0	0	0	0	1	0	0	0	15869	652	23	1	686	1	TECTA	11	120984305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	208174	120984305	14022211	12608	20759											
TECTA	7007	broad.mit.edu	37	chr11	120996175	120996175	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctcctatataaactcCacctgtggactctgtggaaa	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120996175	A	A	120996175	2	1	9	1	0	0	0	0	0	0	0	1	15869	581	21	2		2	TECTA	11	120996175	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11870	120996175	14010341	12609	20760											
TECTA	7007	broad.mit.edu	37	chr11	121016299	121016299	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctatctgcccctgaagctGgggcaagggaagataaatat	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121016299	T	T	121016299	2	4	9	1	0	0	0	0	0	0	0	1	15869	1335	47	2		2	TECTA	11	121016299	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20124	121016299	13990217	12610	20761											
TECTA	7007	broad.mit.edu	37	chr11	121031033	121031033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctgtggcaacttcaacGgggacctaacagatgattat	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121031033	T	T	121031033	3	4	9	1	0	0	0	0	1	0	0	0	15869	1116	39	1	4933	1	TECTA	11	121031033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14734	121031033	13975483	12611	20762											
TECTA	7007	broad.mit.edu	37	chr11	121037373	121037373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaagctcttccagctcGgttttgagagggagggcgtg	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121037373	T	T	121037373	3	4	9	1	0	0	0	0	1	0	0	0	15869	1116	39	1	5536	1	TECTA	11	121037373	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6340	121037373	13969143	12612	20763											
TECTA	7007	broad.mit.edu	37	chr11	121039474	121039474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctacaaacatccttacCgccagggtgaagtagtgttg	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121039474	A	A	121039474	3	1	9	1	0	0	0	0	1	0	0	0	15869	652	23	1	5913	1	TECTA	11	121039474	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2101	121039474	13967042	12613	20764											
SC5DL	6309	broad.mit.edu	37	chr11	121177872	121177872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaccttaccatatataccCttttatctttccattacaca	0	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121177872	A	A	121177872	3	1	9	1	0	0	0	0	1	0	0	0	13978	681	24	2	565	2	SC5DL	11	121177872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138398	121177872	13828644	12614	20765											
SORL1	6653	broad.mit.edu	37	chr11	121358826	121358826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttttccatcccatttcGggcagctgatctcctcctac	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121358826	T	T	121358826	3	4	9	1	0	0	0	0	1	0	0	0	15048	1116	39	1	628	1	SORL1	11	121358826	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	180954	121358826	13647690	12615	20766											
SORL1	6653	broad.mit.edu	37	chr11	121456996	121456996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccagcaaacattgtgatGgtctgcgtgattgctctgat	10	9	2	3	rs145960733		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121456996	T	T	121456996	3	4	9	1	0	0	0	0	1	0	0	0	15048	1348	47	2	3878	2	SORL1	11	121456996	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98170	121456996	13549520	12616	20767											
SORL1	6653	broad.mit.edu	37	chr11	121457026	121457026	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgctctgatggctccgatGaacagcactgcggtgagttc	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121457026	T	T	121457026	4	4	9	1	0	0	0	0	0	1	0	0	15048	1291	45	3	3908	3	SORL1	11	121457026	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	121457026	13549490	12617	20768											
SORL1	6653	broad.mit.edu	37	chr11	121460006	121460006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggtatgtgatgagttcGgtttccagtgtcagaatgga	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121460006	T	T	121460006	3	4	9	1	0	0	0	0	1	0	0	0	15048	1116	39	1	4099	1	SORL1	11	121460006	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2980	121460006	13546510	12618	20769											
SORL1	6653	broad.mit.edu	37	chr11	121461689	121461689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctaatgttttgggtttcCgtgcttggtgtttttctcag	10	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121461689	A	A	121461689	1	1	9	0	1	0	0	0	0	0	0	0	15048	667	23	1		1	SORL1	11	121461689	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1683	121461689	13544827	12619	20770											
SORL1	6653	broad.mit.edu	37	chr11	121476246	121476246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcaaggcacacaacacCaatgactttgtgaccctgag	8	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121476246	A	A	121476246	2	1	9	1	0	0	0	0	0	0	0	1	15048	581	21	2		2	SORL1	11	121476246	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14557	121476246	13530270	12620	20771											
SORL1	6653	broad.mit.edu	37	chr11	121490566	121490566	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcatgtggttcatacGggcaaaacctccgtggtcat	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121490566	T	T	121490566	2	4	9	1	0	0	0	0	0	0	0	1	15048	1103	39	1		1	SORL1	11	121490566	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14320	121490566	13515950	12621	20772											
SORL1	6653	broad.mit.edu	37	chr11	121490578	121490578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcatacgggcaaaacctcCgtggtcatcaagtgggaatc	11	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121490578	A	A	121490578	2	1	9	1	0	0	0	0	0	0	0	1	15048	639	23	1		1	SORL1	11	121490578	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	121490578	13515938	12622	20773											
BLID	414899	broad.mit.edu	37	chr11	121986478	121986478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggttctttgttggaaccCaagagcgcctccagtggcag	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121986478	A	A	121986478	3	1	9	1	0	0	0	0	1	0	0	0	1449	593	21	2	177	2	BLID	11	121986478	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	495900	121986478	13020038	12623	20774											
UBASH3B	84959	broad.mit.edu	37	chr11	122653913	122653913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatattttctcgggatatcCgatttgctaaccatgaggta	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122653913	A	A	122653913	2	1	9	1	0	0	0	0	0	0	0	1	16966	644	23	1		1	UBASH3B	11	122653913	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	667435	122653913	12352603	12624	20775											
UBASH3B	84959	broad.mit.edu	37	chr11	122659787	122659787	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgaggcatggggctcactCaccctctcttccttttccag	10	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122659787	A	A	122659787	1	1	9	0	1	0	0	0	0	0	0	0	16966	841	29	3		3	UBASH3B	11	122659787	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5874	122659787	12346729	12625	20776											
UBASH3B	84959	broad.mit.edu	37	chr11	122678897	122678897	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccgaaaggtaattcattctCgtactttggggtccgtgatg	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122678897	A	A	122678897	1	1	9	0	1	0	0	0	0	0	0	0	16966	899	31	3		3	UBASH3B	11	122678897	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19110	122678897	12327619	12626	20777											
C11orf63	79864	broad.mit.edu	37	chr11	122756770	122756770	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggcaacggtatggagccCgacagcttagacgaggagga	17	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122756770	A	A	122756770	2	1	9	1	0	0	0	0	0	0	0	1	1666	639	23	1		1	C11orf63	11	122756770	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	77873	122756770	12249746	12627	20778											
C11orf63	79864	broad.mit.edu	37	chr11	122774667	122774667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacaaatattcagacctcCgctatgacccgaactggaag	8	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122774667	A	A	122774667	3	1	9	1	0	0	0	0	1	0	0	0	1666	652	23	1	385	1	C11orf63	11	122774667	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17897	122774667	12231849	12628	20779											
C11orf63	79864	broad.mit.edu	37	chr11	122827328	122827328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccagacctgactcagccCatctgtctgttaggaaactt	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122827328	A	A	122827328	1	1	9	0	1	0	0	0	0	0	0	0	1666	609	21	2		2	C11orf63	11	122827328	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52661	122827328	12179188	12629	20780											
BSX	390259	broad.mit.edu	37	chr11	122849899	122849899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgaactccacaaggtccCgaaggtattaagacttgaag	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122849899	A	A	122849899	1	1	9	0	1	0	0	0	0	0	0	0	1544	667	23	1		1	BSX	11	122849899	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22571	122849899	12156617	12630	20781											
ASAM	79827	broad.mit.edu	37	chr11	122944173	122944173	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcgtgggagtcaagtcCattgtaattcagaccgtttg	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122944173	A	A	122944173	1	1	9	0	1	0	0	0	0	0	0	0	1013	609	21	2		2	ASAM	11	122944173	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	94274	122944173	12062343	12631	20782											
ASAM	79827	broad.mit.edu	37	chr11	122945367	122945367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcactatagtgctggccCtaaaacagaagccccgtaaa	9	11	1	1	rs73610557	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122945367	A	A	122945367	1	1	9	0	1	0	0	0	0	0	0	0	1013	696	24	2		2	ASAM	11	122945367	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1194	122945367	12061149	12632	20783											
ASAM	79827	broad.mit.edu	37	chr11	122945381	122945382	+	Intron	DNP	CC	AA	AA													ctggccctaaaacagaagccCcgtaaaagtagggatgtggg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	122945382	AA	AA	122945381	1	1	9	0	1	0	0	0	0	0	0	0	1013	638	22	2		2	ASAM	11	122945381	Intron	DNP	CC	TCGA-05-4396-01A-21D-1855-08	14	122945381	12061135	12633	20784											
SCN3B	55800	broad.mit.edu	37	chr11	123524457	123524457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggtgctggtacttacccCagtagataagcacgagagaa	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123524457	A	A	123524457	3	1	9	1	0	0	0	0	1	0	0	0	14032	595	21	2	614	2	SCN3B	11	123524457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	579076	123524457	11482059	12634	20785											
ZNF202	7753	broad.mit.edu	37	chr11	123601358	123601358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggatctgctcctttgtcCgcctctctggtctcagccac	8	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123601358	A	A	123601358	3	1	9	1	0	0	0	0	1	0	0	0	17889	652	23	1	1731	1	ZNF202	11	123601358	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76901	123601358	11405158	12635	20786											
OR6X1	390260	broad.mit.edu	37	chr11	123625230	123625230	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgccatttctcatgtcCcttgataccctagaaagaca	6	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123625230	A	A	123625230	1	1	9	0	1	0	0	0	0	0	0	0	11306	638	22	2		2	OR6X1	11	123625230	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	23872	123625230	11381286	12636	20787											
OR10G4	390264	broad.mit.edu	37	chr11	123886691	123886691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaccagcatgatgagtgGgagcaggtgtgccctcctgg	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123886691	T	T	123886691	3	4	9	1	0	0	0	0	1	0	0	0	10995	1232	43	2	412	2	OR10G4	11	123886691	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	261461	123886691	11119825	12637	20788											
OR10G7	390265	broad.mit.edu	37	chr11	123909381	123909381	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactgtgtagaggaaacactCggtgctccccaggaagtgga	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123909381	A	A	123909381	4	1	9	1	0	0	0	0	0	1	0	0	10996	893	31	3	611	3	OR10G7	11	123909381	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22690	123909381	11097135	12638	20789											
VWA5A	4013	broad.mit.edu	37	chr11	123989284	123989284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaagactcctatagtcCctgtggaggacctgccctac	10	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123989284	A	A	123989284	3	1	9	1	0	0	0	0	1	0	0	0	17369	623	22	2	528	2	VWA5A	11	123989284	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79903	123989284	11017232	12639	20790											
OR8G2	26492	broad.mit.edu	37	chr11	124095790	124095790	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcacatgttggctgtaacGgcatatgaccgctatgttgc	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124095790	T	T	124095790	2	4	9	1	0	0	0	0	0	0	0	1	11329	1103	39	1		1	OR8G2	11	124095790	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	106506	124095790	10910726	12640	20791											
OR8G2	26492	broad.mit.edu	37	chr11	124095874	124095874	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcttctggctcacagtGggagtttacattttaggcat	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124095874	T	T	124095874	2	4	9	1	0	0	0	0	0	0	0	1	11329	1335	47	2		2	OR8G2	11	124095874	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	84	124095874	10910642	12641	20792											
OR8B8	26493	broad.mit.edu	37	chr11	124310853	124310853	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatcagggttatcaagccCaggttccccaccacagtgac	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124310853	A	A	124310853	2	1	9	1	0	0	0	0	0	0	0	1	11324	581	21	2		2	OR8B8	11	124310853	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	214979	124310853	10695663	12642	20793											
TBRG1	84897	broad.mit.edu	37	chr11	124501370	124501370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtttaggctaccttccCatcttcacacatagccgagt	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124501370	A	A	124501370	1	1	9	0	1	0	0	0	0	0	0	0	15770	609	21	2		2	TBRG1	11	124501370	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	190517	124501370	10505146	12643	20794											
SIAE	54414	broad.mit.edu	37	chr11	124524638	124524638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagacagagaggatgcGgacagactgatatgccgcag	17	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124524638	T	T	124524638	3	4	9	1	0	0	0	0	1	0	0	0	14411	1116	39	1	1142	1	SIAE	11	124524638	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23268	124524638	10481878	12644	20795											
SIAE	54414	broad.mit.edu	37	chr11	124530684	124530684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggatccagtaccaccatcCacgtatcagagtgagctgaa	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124530684	A	A	124530684	3	1	9	1	0	0	0	0	1	0	0	0	14411	595	21	2	1358	2	SIAE	11	124530684	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6046	124530684	10475832	12645	20796											
SPA17	53340	broad.mit.edu	37	chr11	124564187	124564187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtctcttactttttctcCtttcgatgaaggactcttct	6	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124564187	A	A	124564187	1	1	9	0	1	0	0	0	0	0	0	0	15085	696	24	2		2	SPA17	11	124564187	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33503	124564187	10442329	12646	20797											
VSIG2	23584	broad.mit.edu	37	chr11	124618384	124618384	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacagcaacagcacgccCaggagcaccccaatcagagc	9	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124618384	A	A	124618384	2	1	9	1	0	0	0	0	0	0	0	1	17351	581	21	2		2	VSIG2	11	124618384	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54197	124618384	10388132	12647	20798											
C11orf61	79684	broad.mit.edu	37	chr11	124637009	124637009	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggatgaggggtggtccGggtaatgggaagtgagtaga	19	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124637009	T	T	124637009	1	4	9	0	1	0	0	0	0	0	0	0	1665	1131	39	1		1	C11orf61	11	124637009	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	18625	124637009	10369507	12648	20799											
C11orf61	79684	broad.mit.edu	37	chr11	124637341	124637341	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtagcaatagataattcGggtgggttctatttccacct	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124637341	T	T	124637341	2	4	9	1	0	0	0	0	0	0	0	1	1665	1124	39	1		1	C11orf61	11	124637341	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	332	124637341	10369175	12649	20800											
C11orf61	79684	broad.mit.edu	37	chr11	124637400	124637400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtttccaggtcaaccCggccctcttttcctgggtcc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124637400	A	A	124637400	3	1	9	1	0	0	0	0	1	0	0	0	1665	652	23	1	331	1	C11orf61	11	124637400	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	124637400	10369116	12650	20801											
ROBO3	64221	broad.mit.edu	37	chr11	124742290	124742290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaggtcctgcttttccCcagtcagtcacttcagccga	7	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124742290	A	A	124742290	3	1	9	1	0	0	0	0	1	0	0	0	13626	623	22	2	1202	2	ROBO3	11	124742290	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104890	124742290	10264226	12651	20802											
ROBO3	64221	broad.mit.edu	37	chr11	124747040	124747040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctcttctttctcccacGggttcctttctggaagcctc	6	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124747040	T	T	124747040	1	4	9	0	1	0	0	0	0	0	0	0	13626	1131	39	1		1	ROBO3	11	124747040	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4750	124747040	10259476	12652	20803											
ROBO4	54538	broad.mit.edu	37	chr11	124765348	124765348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctgaagggatcaggccCtgacctttttccggcagcct	11	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124765348	A	A	124765348	1	1	9	0	1	0	0	0	0	0	0	0	13627	696	24	2		2	ROBO4	11	124765348	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18308	124765348	10241168	12653	20804											
HEPACAM	220296	broad.mit.edu	37	chr11	124792235	124792235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctagcatcaggcatgtGggaggggatcactgcatgtt	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792235	T	T	124792235	1	4	9	0	1	0	0	0	0	0	0	0	7119	1363	47	2		2	HEPACAM	11	124792235	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26887	124792235	10214281	12654	20805											
HEPACAM	220296	broad.mit.edu	37	chr11	124792259	124792259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatcactgcatgtttctGggcacccagtccagagccgc	13	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792259	T	T	124792259	1	4	9	0	1	0	0	0	0	0	0	0	7119	1363	47	2		2	HEPACAM	11	124792259	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	124792259	10214257	12655	20806											
CCDC15	80071	broad.mit.edu	37	chr11	124857163	124857163	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatttgctggaaacccaGggtgatttgacaggaatcca	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124857163	C	C	124857163	3	2	9	1	0	0	0	0	1	0	0	0	2810	991	35	4	1067	4	CCDC15	11	124857163	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64904	124857163	10149353	12656	20807											
SLC37A2	219855	broad.mit.edu	37	chr11	124950512	124950512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctccctcccttccaggcGggggttcatcatgggcatct	10	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124950512	T	T	124950512	3	4	9	1	0	0	0	0	1	0	0	0	14712	1116	39	1	556	1	SLC37A2	11	124950512	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	93349	124950512	10056004	12657	20808											
SLC37A2	219855	broad.mit.edu	37	chr11	124956085	124956085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgtcctctgttgtcccCgtgtatctctatagctctag	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124956085	A	A	124956085	1	1	9	0	1	0	0	0	0	0	0	0	14712	667	23	1		1	SLC37A2	11	124956085	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5573	124956085	10050431	12658	20809											
EI24	9538	broad.mit.edu	37	chr11	125447447	125447447	+	Silent	SNP	G	T	T													tttattcctgtgcttcagtcGgtaacagcccgaattatcgg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125447447	T	T	125447447	2	4	9	1	0	0	0	0	0	0	0	1	5025	1103	39	1		1	EI24	11	125447447	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	491362	125447447	9559069	12659	20810	140	2									
EI24	9538	broad.mit.edu	37	chr11	125447457	125447457	+	Silent	SNP	C	A	A													tgcttcagtcggtaacagccCgaattatcggtaagtgtata							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125447457	A	A	125447457	2	1	9	1	0	0	0	0	0	0	0	1	5025	644	23	1		1	EI24	11	125447457	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	125447457	9559059	12660	20811	140	2									
EI24	9538	broad.mit.edu	37	chr11	125448101	125448101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaattttcagtgctctttGggtgctccccttgtttgtgc	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125448101	T	T	125448101	3	4	9	1	0	0	0	0	1	0	0	0	5025	1357	47	2	407	2	EI24	11	125448101	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	644	125448101	9558415	12661	20812											
EI24	9538	broad.mit.edu	37	chr11	125450108	125450108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcaataaaggtaagtcCatctaaagaaatccagaaaa	7	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125450108	A	A	125450108	1	1	9	0	1	0	0	0	0	0	0	0	5025	609	21	2		2	EI24	11	125450108	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2007	125450108	9556408	12662	20813											
STT3A	3703	broad.mit.edu	37	chr11	125475523	125475523	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtgtgtcctttctgcaGggattgccatcttttgcatg	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125475523	T	T	125475523	5	4	9	1	0	0	0	0	0	0	1	0	15451	1014	35	2	530	2	STT3A	11	125475523	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	25415	125475523	9530993	12663	20814											
STT3A	3703	broad.mit.edu	37	chr11	125479348	125479348	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaaatatctccctggacGgggcgtttctactcgctgct	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125479348	T	T	125479348	2	4	9	1	0	0	0	0	0	0	0	1	15451	1103	39	1		1	STT3A	11	125479348	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3825	125479348	9527168	12664	20815											
STT3A	3703	broad.mit.edu	37	chr11	125482975	125482975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaggcctactcttctcCgtccattgtactatctgccc	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125482975	A	A	125482975	3	1	9	1	0	0	0	0	1	0	0	0	15451	652	23	1	1503	1	STT3A	11	125482975	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3627	125482975	9523541	12665	20816											
STT3A	3703	broad.mit.edu	37	chr11	125484266	125484266	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatgagatcatgagggagctCgatgtcagctatgtgctggt	14	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125484266	A	A	125484266	2	1	9	1	0	0	0	0	0	0	0	1	15451	871	31	3		3	STT3A	11	125484266	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1291	125484266	9522250	12666	20817											
STT3A	3703	broad.mit.edu	37	chr11	125488319	125488319	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagggagcacagatacagGcaaacatatcaaggagaatg	13	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125488319	A	A	125488319	3	1	9	1	0	0	0	0	1	0	0	0	15451	1203	42	4	1884	4	STT3A	11	125488319	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4053	125488319	9518197	12667	20818											
CHEK1	1111	broad.mit.edu	37	chr11	125496654	125496654	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttttacagccgaggtgctCggtggagtcatggcagtgcc	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125496654	A	A	125496654	1	1	9	0	1	0	0	0	0	0	0	0	3365	899	31	3		3	CHEK1	11	125496654	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	8335	125496654	9509862	12668	20819											
CHEK1	1111	broad.mit.edu	37	chr11	125503148	125503148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatgtgtggtactttacCatatgttgctccagaacttc	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125503148	A	A	125503148	3	1	9	1	0	0	0	0	1	0	0	0	3365	594	21	2	533	2	CHEK1	11	125503148	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6494	125503148	9503368	12669	20820											
CHEK1	1111	broad.mit.edu	37	chr11	125505399	125505399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaacatacctcaaccCttggaaaaaaatcgattctg	4	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125505399	A	A	125505399	3	1	9	1	0	0	0	0	1	0	0	0	3365	681	24	2	711	2	CHEK1	11	125505399	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2251	125505399	9501117	12670	20821											
CHEK1	1111	broad.mit.edu	37	chr11	125505459	125505459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcttgagtgaaagagtacCgatttcttggatatgaagtc	10	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125505459	A	A	125505459	1	1	9	0	1	0	0	0	0	0	0	0	3365	667	23	1		1	CHEK1	11	125505459	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	125505459	9501057	12671	20822											
CHEK1	1111	broad.mit.edu	37	chr11	125514045	125514045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcacaggtctttccttatGggataccagcccctcataca	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125514045	T	T	125514045	3	4	9	1	0	0	0	0	1	0	0	0	3365	1357	47	2	1017	2	CHEK1	11	125514045	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8586	125514045	9492471	12672	20823											
CHEK1	1111	broad.mit.edu	37	chr11	125542638	125542638	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagcagagacagactagtGagcagaaagcttcgtcctcc	12	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125542638	T	T	125542638	1	4	9	0	1	0	0	0	0	0	0	0	3365	1305	45	3		3	CHEK1	11	125542638	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28593	125542638	9463878	12673	20824											
PATE1	160065	broad.mit.edu	37	chr11	125617211	125617211	+	Intron	SNP	C	A	A													aagggcagactataagaaccCaatacaagagtaaatctcag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125617211	A	A	125617211	1	1	9	0	1	0	0	0	0	0	0	0	11567	609	21	2		2	PATE1	11	125617211	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	74573	125617211	9389305	12674	20825	141	2									
PATE1	160065	broad.mit.edu	37	chr11	125617219	125617219	+	Intron	SNP	G	T	T													actataagaacccaatacaaGagtaaatctcaggcacattt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125617219	T	T	125617219	1	4	9	0	1	0	0	0	0	0	0	0	11567	957	33	3		3	PATE1	11	125617219	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8	125617219	9389297	12675	20826	141	2									
PUS3	83480	broad.mit.edu	37	chr11	125765366	125765366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgaaaattaatcacacCgttggctacatccattttac	4	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125765366	A	A	125765366	3	1	9	1	0	0	0	0	1	0	0	0	12940	652	23	1	756	1	PUS3	11	125765366	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148147	125765366	9241150	12676	20827											
PUS3	83480	broad.mit.edu	37	chr11	125765579	125765579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtacccgattgagaatgtGggtataacggatctcttcag	12	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125765579	T	T	125765579	3	4	9	1	0	0	0	0	1	0	0	0	12940	1348	47	2	969	2	PUS3	11	125765579	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	213	125765579	9240937	12677	20828											
CDON	50937	broad.mit.edu	37	chr11	125888402	125888402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgcagttaggcctctcCctttatgaaggacaccacag	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125888402	A	A	125888402	1	1	9	0	1	0	0	0	0	0	0	0	3200	638	22	2		2	CDON	11	125888402	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	122823	125888402	9118114	12678	20829											
RPUSD4	84881	broad.mit.edu	37	chr11	126074258	126074258	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagagaaagagagaaaactCgtgaggagctacagaaacaa	12	5	0	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126074258	A	A	126074258	1	1	9	0	1	0	0	0	0	0	0	0	13780	899	31	3		3	RPUSD4	11	126074258	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	185856	126074258	8932258	12679	20830											
RPUSD4	84881	broad.mit.edu	37	chr11	126081320	126081320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagcgcactgcctctagGgagttctggtccctttggac	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126081320	T	T	126081320	1	4	9	0	1	0	0	0	0	0	0	0	13780	1247	43	2		2	RPUSD4	11	126081320	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7062	126081320	8925196	12680	20831											
RPUSD4	84881	broad.mit.edu	37	chr11	126081370	126081370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctttgtgtcttgttccCgtttctgggctcggagcttc	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126081370	A	A	126081370	3	1	9	1	0	0	0	0	1	0	0	0	13780	652	23	1	997	1	RPUSD4	11	126081370	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	126081370	8925146	12681	20832											
RPUSD4	84881	broad.mit.edu	37	chr11	126081393	126081393	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggctcggagcttctcCgctaatctctgggcatttat	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126081393	A	A	126081393	2	1	9	1	0	0	0	0	0	0	0	1	13780	639	23	1		1	RPUSD4	11	126081393	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	126081393	8925123	12682	20833											
RPUSD4	84881	broad.mit.edu	37	chr11	126081473	126081473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgagagtgaagagactccCgcaaccttggccgtttcccc	11	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126081473	A	A	126081473	3	1	9	1	0	0	0	0	1	0	0	0	13780	652	23	1	1100	1	RPUSD4	11	126081473	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	126081473	8925043	12683	20834											
SRPR	6734	broad.mit.edu	37	chr11	126135254	126135254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcatccatgatgtccCggagcatgtctacacgacgc	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126135254	A	A	126135254	3	1	9	1	0	0	0	0	1	0	0	0	15280	652	23	1	716	1	SRPR	11	126135254	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53781	126135254	8871262	12684	20835											
SRPR	6734	broad.mit.edu	37	chr11	126136475	126136475	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacccagttcccacacccGgggtgcttttttgcccttct	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126136475	T	T	126136475	2	4	9	1	0	0	0	0	0	0	0	1	15280	1115	39	1		1	SRPR	11	126136475	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1221	126136475	8870041	12685	20836											
SRPR	6734	broad.mit.edu	37	chr11	126137129	126137129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttgggcttttcccccCgtgtctcaatcatggacctc	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126137129	A	A	126137129	3	1	9	1	0	0	0	0	1	0	0	0	15280	652	23	1	1493	1	SRPR	11	126137129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	654	126137129	8869387	12686	20837											
SRPR	6734	broad.mit.edu	37	chr11	126137977	126137977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggagttgttacctcccCgttcctggagaaagagtatg	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126137977	A	A	126137977	3	1	9	1	0	0	0	0	1	0	0	0	15280	652	23	1	1846	1	SRPR	11	126137977	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	848	126137977	8868539	12687	20838											
FOXRED1	55572	broad.mit.edu	37	chr11	126142964	126142964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcagccagctttctacGgaacatcaatgtaggtgcaa	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126142964	T	T	126142964	3	4	9	1	0	0	0	0	1	0	0	0	6093	1116	39	1	417	1	FOXRED1	11	126142964	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4987	126142964	8863552	12688	20839											
FOXRED1	55572	broad.mit.edu	37	chr11	126147300	126147300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgtggctacagccttccCgagaaccccagtgttttgtg	12	11	0	1	rs140700160	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126147300	A	A	126147300	1	1	9	0	1	0	0	0	0	0	0	0	6093	667	23	1		1	FOXRED1	11	126147300	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4336	126147300	8859216	12689	20840											
ST3GAL4	6484	broad.mit.edu	37	chr11	126277155	126277155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctctgtgcagctactcccGggatcagcccatcttcctgc	8	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126277155	T	T	126277155	3	4	9	1	0	0	0	0	1	0	0	0	15335	1116	39	1	193	1	ST3GAL4	11	126277155	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	129855	126277155	8729361	12690	20841											
KIRREL3	84623	broad.mit.edu	37	chr11	126318968	126318968	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcacctcacaggagacGggctctgagaagtacgtgta	13	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126318968	T	T	126318968	2	4	9	1	0	0	0	0	0	0	0	1	8397	1103	39	1		1	KIRREL3	11	126318968	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41813	126318968	8687548	12691	20842											
KIRREL3	84623	broad.mit.edu	37	chr11	126333180	126333180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgctgacgatgctctccCgcttgccgtcccgaagcagg	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126333180	A	A	126333180	3	1	9	1	0	0	0	0	1	0	0	0	8397	652	23	1	1877	1	KIRREL3	11	126333180	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14212	126333180	8673336	12692	20843											
ETS1	2113	broad.mit.edu	37	chr11	128354929	128354929	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgggctctgagaactcCgatggtggaacacactgggc	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128354929	A	A	128354929	2	1	9	1	0	0	0	0	0	0	0	1	5317	639	23	1		1	ETS1	11	128354929	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2021749	128354929	6651587	12693	20844											
ARHGAP32	9743	broad.mit.edu	37	chr11	128840324	128840324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggagagactgcactctcCggatggtagggtacggtgga	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128840324	A	A	128840324	3	1	9	1	0	0	0	0	1	0	0	0	883	652	23	1	1525	1	ARHGAP32	11	128840324	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	485395	128840324	6166192	12694	20845											
ARHGAP32	9743	broad.mit.edu	37	chr11	128840844	128840844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagtggtgcaggaaagcCacagggatgcgcagggacag	19	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128840844	A	A	128840844	3	1	9	1	0	0	0	0	1	0	0	0	883	594	21	2	2045	2	ARHGAP32	11	128840844	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	520	128840844	6165672	12695	20846											
ARHGAP32	9743	broad.mit.edu	37	chr11	128840947	128840947	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggacagctgtagccatGggacactgagcagcagcagc	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128840947	T	T	128840947	2	4	9	1	0	0	0	0	0	0	0	1	883	1335	47	2		2	ARHGAP32	11	128840947	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	103	128840947	6165569	12696	20847											
ARHGAP32	9743	broad.mit.edu	37	chr11	128842501	128842501	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaaaatcagcagtggtGggttgttcagccacatccca	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128842501	T	T	128842501	2	4	9	1	0	0	0	0	0	0	0	1	883	1335	47	2		2	ARHGAP32	11	128842501	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1554	128842501	6164015	12697	20848											
ARHGAP32	9743	broad.mit.edu	37	chr11	128844297	128844297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccaatgacttctgacaccCgtggtggtagggtcactgaa	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128844297	A	A	128844297	3	1	9	1	0	0	0	0	1	0	0	0	883	652	23	1	3522	1	ARHGAP32	11	128844297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1796	128844297	6162219	12698	20849											
ARHGAP32	9743	broad.mit.edu	37	chr11	128932218	128932218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgtgcttaacactttcGggggcatgtcaataacagaa	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128932218	T	T	128932218	3	4	9	1	0	0	0	0	1	0	0	0	883	1116	39	1	5441	1	ARHGAP32	11	128932218	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87921	128932218	6074298	12699	20850											
BARX2	8538	broad.mit.edu	37	chr11	129246116	129246116	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccctgcattcctgtacGggtaagacgctccgctaggg	12	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129246116	T	T	129246116	2	4	9	1	0	0	0	0	0	0	0	1	1321	1130	39	1		1	BARX2	11	129246116	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	313898	129246116	5760400	12700	20851											
TMEM45B	120224	broad.mit.edu	37	chr11	129727243	129727243	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaccttttggaacaccCgaatgggaccagaaggatga	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129727243	A	A	129727243	2	1	9	1	0	0	0	0	0	0	0	1	16293	639	23	1		1	TMEM45B	11	129727243	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	481127	129727243	5279273	12701	20852											
NFRKB	4798	broad.mit.edu	37	chr11	129739934	129739934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtgttgcctcctgtccCgaagaggtcctgggtcaatt	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129739934	A	A	129739934	3	1	9	1	0	0	0	0	1	0	0	0	10479	652	23	1	929	1	NFRKB	11	129739934	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12691	129739934	5266582	12702	20853											
NFRKB	4798	broad.mit.edu	37	chr11	129744368	129744368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccatcccagaatccctaGggcagacactctcctgaagt	7	16	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129744368	T	T	129744368	1	4	9	0	1	0	0	0	0	0	0	0	10479	1015	35	2		2	NFRKB	11	129744368	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4434	129744368	5262148	12703	20854											
NFRKB	4798	broad.mit.edu	37	chr11	129744472	129744472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgtgcttggtgaatcCgctctgtgaacaagaggggc	14	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129744472	A	A	129744472	3	1	9	1	0	0	0	0	1	0	0	0	10479	652	23	1	1949	1	NFRKB	11	129744472	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	129744472	5262044	12704	20855											
NFRKB	4798	broad.mit.edu	37	chr11	129747236	129747236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctgctcctgaaaaaccCgtttctcctcccccgtgctg	6	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129747236	A	A	129747236	3	1	9	1	0	0	0	0	1	0	0	0	10479	652	23	1	2391	1	NFRKB	11	129747236	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2764	129747236	5259280	12705	20856											
NFRKB	4798	broad.mit.edu	37	chr11	129752609	129752609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctgcatattcttttccCaaggcccaccaaagacagaa	5	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129752609	A	A	129752609	1	1	9	0	1	0	0	0	0	0	0	0	10479	609	21	2		2	NFRKB	11	129752609	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5373	129752609	5253907	12706	20857											
NFRKB	4798	broad.mit.edu	37	chr11	129756179	129756179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgatacctgtgactgccCacattttatatccagttccc	5	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129756179	A	A	129756179	1	1	9	0	1	0	0	0	0	0	0	0	10479	609	21	2		2	NFRKB	11	129756179	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3570	129756179	5250337	12707	20858											
NFRKB	4798	broad.mit.edu	37	chr11	129756337	129756337	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcggggttaaagtgtcCgtcttaaaaaaataaaggta	9	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129756337	A	A	129756337	4	1	9	1	0	0	0	0	0	1	0	0	10479	661	23	1	3687	1	NFRKB	11	129756337	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158	129756337	5250179	12708	20859											
PRDM10	56980	broad.mit.edu	37	chr11	129785798	129785798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaagcagtatacagttcCactttcttgcttaaagcaaa	6	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129785798	A	A	129785798	1	1	9	0	1	0	0	0	0	0	0	0	12557	609	21	2		2	PRDM10	11	129785798	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29461	129785798	5220718	12709	20860											
ST14	6768	broad.mit.edu	37	chr11	130064000	130064000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggtgtgtgagaagcttGggttctgtctgctcttccta	13	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130064000	T	T	130064000	1	4	9	0	1	0	0	0	0	0	0	0	15329	1363	47	2		2	ST14	11	130064000	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	278202	130064000	4942516	12710	20861											
ST14	6768	broad.mit.edu	37	chr11	130066595	130066595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctacgactccagtgacCgtgagtgaacattgttggga	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130066595	A	A	130066595	3	1	9	1	0	0	0	0	1	0	0	0	15329	666	23	1	1396	1	ST14	11	130066595	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2595	130066595	4939921	12711	20862											
ZBTB44	29068	broad.mit.edu	37	chr11	130130952	130130952	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaggtagtttttgtgctctCacaagtcacataatcagcca	7	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130130952	A	A	130130952	4	1	9	1	0	0	0	0	0	1	0	0	17671	835	29	3	564	3	ZBTB44	11	130130952	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64357	130130952	4875564	12712	20863											
ADAMTS15	170689	broad.mit.edu	37	chr11	130343277	130343277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatctgcccaaagagcctcGggaggacaagtcctctcatc	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130343277	T	T	130343277	3	4	9	1	0	0	0	0	1	0	0	0	260	1116	39	1	2444	1	ADAMTS15	11	130343277	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	212325	130343277	4663239	12713	20864											
SNX19	399979	broad.mit.edu	37	chr11	130748244	130748244	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctacttgaagagggcacGggcttcctgactggtctctg	13	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130748244	T	T	130748244	1	4	9	0	1	0	0	0	0	0	0	0	15004	1131	39	1		1	SNX19	11	130748244	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	404967	130748244	4258272	12714	20865											
SNX19	399979	broad.mit.edu	37	chr11	130784211	130784211	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtgccactgtgctctcGggctgtaatggtgccagtga	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130784211	T	T	130784211	2	4	9	1	0	0	0	0	0	0	0	1	15004	1124	39	1		1	SNX19	11	130784211	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35967	130784211	4222305	12715	20866											
NTM	50863	broad.mit.edu	37	chr11	131240755	131240755	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcttgggcaatcttcacGgggctggctgctctgtgtct	12	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131240755	T	T	131240755	2	4	9	1	0	0	0	0	0	0	0	1	10794	1103	39	1		1	NTM	11	131240755	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	456544	131240755	3765761	12716	20867											
OPCML	4978	broad.mit.edu	37	chr11	132527002	132527002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcactattaggtgaaccCgggacgttttgggatgattg	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132527002	A	A	132527002	3	1	9	1	0	0	0	0	1	0	0	0	10968	652	23	1	681	1	OPCML	11	132527002	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1286247	132527002	2479514	12717	20868											
SPATA19	219938	broad.mit.edu	37	chr11	133714478	133714478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttctcccttacaccctGggaagggtggttgatggaca	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133714478	T	T	133714478	3	4	9	1	0	0	0	0	1	0	0	0	15120	1357	47	2	326	2	SPATA19	11	133714478	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1187476	133714478	1292038	12718	20869											
SPATA19	219938	broad.mit.edu	37	chr11	133715330	133715330	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaatatacacaatccatgtCgtaattatcatctttgaatg	5	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133715330	A	A	133715330	2	1	9	1	0	0	0	0	0	0	0	1	15120	871	31	3		3	SPATA19	11	133715330	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	852	133715330	1291186	12719	20870											
IGSF9B	22997	broad.mit.edu	37	chr11	133801090	133801090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggttaggagagaagccCgaagcagatggggaggacgc	20	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133801090	A	A	133801090	1	1	9	0	1	0	0	0	0	0	0	0	7676	667	23	1		1	IGSF9B	11	133801090	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	85760	133801090	1205426	12720	20871											
JAM3	83700	broad.mit.edu	37	chr11	134009666	134009666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaccatagcctacgcagacGggaaaacctgacctcagtgc	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134009666	T	T	134009666	1	4	9	0	1	0	0	0	0	0	0	0	8014	1131	39	1		1	JAM3	11	134009666	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	208576	134009666	996850	12721	20872											
JAM3	83700	broad.mit.edu	37	chr11	134019081	134019081	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtttgtgatctgagaccCgcggtgtggctgagagcgca	15	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134019081	A	A	134019081	1	1	9	0	1	0	0	0	0	0	0	0	8014	667	23	1		1	JAM3	11	134019081	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	9415	134019081	987435	12722	20873											
NCAPD3	23310	broad.mit.edu	37	chr11	134026933	134026933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgggggtgctgatggccCgcttggtcacgtgctcaatc	14	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134026933	A	A	134026933	3	1	9	1	0	0	0	0	1	0	0	0	10301	652	23	1	280	1	NCAPD3	11	134026933	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7852	134026933	979583	12723	20874											
NCAPD3	23310	broad.mit.edu	37	chr11	134027983	134027983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggagaacagccacagcCgctgactttctcactgcaga	10	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134027983	A	A	134027983	1	1	9	0	1	0	0	0	0	0	0	0	10301	667	23	1		1	NCAPD3	11	134027983	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1050	134027983	978533	12724	20875											
NCAPD3	23310	broad.mit.edu	37	chr11	134054813	134054813	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccagtcactttgtcccGggtgctcttaggaagatgct	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134054813	T	T	134054813	2	4	9	1	0	0	0	0	0	0	0	1	10301	1115	39	1		1	NCAPD3	11	134054813	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26830	134054813	951703	12725	20876											
NCAPD3	23310	broad.mit.edu	37	chr11	134054883	134054883	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctaaggtgtttgaattGggattctgctgactagagaa	12	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134054883	T	T	134054883	2	4	9	1	0	0	0	0	0	0	0	1	10301	1335	47	2		2	NCAPD3	11	134054883	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	134054883	951633	12726	20877											
NCAPD3	23310	broad.mit.edu	37	chr11	134064576	134064576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgcagtgcagacttcCtaacgttggtcttctcatcc	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134064576	A	A	134064576	3	1	9	1	0	0	0	0	1	0	0	0	10301	681	24	2	2911	2	NCAPD3	11	134064576	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9693	134064576	941940	12727	20878											
THYN1	29087	broad.mit.edu	37	chr11	134118624	134118624	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggtgaagtaccatgccCaagtttaatcagctagtaag	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134118624	A	A	134118624	1	1	9	0	1	0	0	0	0	0	0	0	16009	609	21	2		2	THYN1	11	134118624	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54048	134118624	887892	12728	20879											
THYN1	29087	broad.mit.edu	37	chr11	134119785	134119785	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagaaggcttcttctccCagcttcatggctctaaggaa	9	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134119785	A	A	134119785	2	1	9	1	0	0	0	0	0	0	0	1	16009	581	21	2		2	THYN1	11	134119785	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1161	134119785	886731	12729	20880											
THYN1	29087	broad.mit.edu	37	chr11	134121141	134121141	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgagggttggagtcctcCactttagctaatgcctcacc	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134121141	A	A	134121141	2	1	9	1	0	0	0	0	0	0	0	1	16009	581	21	2		2	THYN1	11	134121141	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1356	134121141	885375	12730	20881											
ACAD8	27034	broad.mit.edu	37	chr11	134126504	134126504	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctttgactttgctgccCgagagatggctccaaatatg	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134126504	A	A	134126504	2	1	9	1	0	0	0	0	0	0	0	1	110	644	23	1		1	ACAD8	11	134126504	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5363	134126504	880012	12731	20882											
GLB1L2	89944	broad.mit.edu	37	chr11	134217264	134217264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgaggacaacttacaaGggcttcaccgaagcagtgga	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134217264	T	T	134217264	3	4	9	1	0	0	0	0	1	0	0	0	6493	991	35	2	513	2	GLB1L2	11	134217264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90760	134217264	789252	12732	20883											
GLB1L2	89944	broad.mit.edu	37	chr11	134234254	134234254	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaacttgcagtcaacacacGagctgcagctactgaccacc	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134234254	T	T	134234254	4	4	9	1	0	0	0	0	0	1	0	0	6493	1059	37	3	796	3	GLB1L2	11	134234254	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16990	134234254	772262	12733	20884											
IQSEC3	440073	broad.mit.edu	37	chr12	275074	275074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtaaggacacgggctccCgaggcagctggtgggggttc	18	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	275074	A	A	275074	1	1	9	0	1	0	0	0	0	0	0	0	7889	667	23	1		1	IQSEC3	12	275074	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08		275074	133576821	12734	20885											
SLC6A12	6539	broad.mit.edu	37	chr12	301660	301660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccttcctgaaaggacccCgagtcttcaggagggtgatg	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	301660	A	A	301660	3	1	9	1	0	0	0	0	1	0	0	0	14789	652	23	1	167	1	SLC6A12	12	301660	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26586	301660	133550235	12735	20886											
SLC6A12	6539	broad.mit.edu	37	chr12	309777	309777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtgtccccgtagactctGggggccaaagggagcttccc	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	309777	T	T	309777	1	4	9	0	1	0	0	0	0	0	0	0	14789	1363	47	2		2	SLC6A12	12	309777	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8117	309777	133542118	12736	20887											
SLC6A13	6540	broad.mit.edu	37	chr12	346235	346235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgcctcccatcctcaacGgggccacagcttagagaact	8	16	1	1	rs12579445	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	346235	T	T	346235	1	4	9	0	1	0	0	0	0	0	0	0	14790	1131	39	1		1	SLC6A13	12	346235	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36458	346235	133505660	12737	20888											
KDM5A	5927	broad.mit.edu	37	chr12	417152	417152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaatctctttttgctccCgttctttgaaaactgccacc	4	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	417152	A	A	417152	3	1	9	1	0	0	0	0	1	0	0	0	8203	652	23	1	1698	1	KDM5A	12	417152	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70917	417152	133434743	12738	20889											
KDM5A	5927	broad.mit.edu	37	chr12	420172	420172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaagacgcacaggaataGggcgtcctttcgcagacaag	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	420172	T	T	420172	3	4	9	1	0	0	0	0	1	0	0	0	8203	1000	35	2	2009	2	KDM5A	12	420172	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3020	420172	133431723	12739	20890											
KDM5A	5927	broad.mit.edu	37	chr12	430192	430192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttggctgatgacacacGgaagactaaaaagttgttgg	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	430192	T	T	430192	3	4	9	1	0	0	0	0	1	0	0	0	8203	1116	39	1	2606	1	KDM5A	12	430192	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10020	430192	133421703	12740	20891											
KDM5A	5927	broad.mit.edu	37	chr12	463369	463369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatcttcattgtttcccCgaccacaaaacatacaaaca	2	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	463369	A	A	463369	3	1	9	1	0	0	0	0	1	0	0	0	8203	652	23	1	4254	1	KDM5A	12	463369	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33177	463369	133388526	12741	20892											
KDM5A	5927	broad.mit.edu	37	chr12	472197	472197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggctctggggaagtttGggtatcagtgctgagaacct	15	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	472197	T	T	472197	3	4	9	1	0	0	0	0	1	0	0	0	8203	1357	47	2	4564	2	KDM5A	12	472197	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8828	472197	133379698	12742	20893											
KDM5A	5927	broad.mit.edu	37	chr12	475134	475134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagactggaaaagctcatatGggtagagaattctttcataa	9	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	475134	T	T	475134	3	4	9	1	0	0	0	0	1	0	0	0	8203	1348	47	2	4669	2	KDM5A	12	475134	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2937	475134	133376761	12743	20894											
KDM5A	5927	broad.mit.edu	37	chr12	493269	493269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtagatccttgaagttcCcaaaattttgctagttgatc	8	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	493269	A	A	493269	3	1	9	1	0	0	0	0	1	0	0	0	8203	624	22	2	4882	2	KDM5A	12	493269	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18135	493269	133358626	12744	20895											
CCDC77	84318	broad.mit.edu	37	chr12	538004	538004	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatgctggagaagtgacCtatttttgtaaggagcctcc	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	538004	A	A	538004	2	1	9	1	0	0	0	0	0	0	0	1	2879	668	24	2		2	CCDC77	12	538004	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44735	538004	133313891	12745	20896											
CCDC77	84318	broad.mit.edu	37	chr12	542375	542375	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagctgggagagcagacCaaactttctcgagaacaaat	10	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	542375	A	A	542375	2	1	9	1	0	0	0	0	0	0	0	1	2879	581	21	2		2	CCDC77	12	542375	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4371	542375	133309520	12746	20897											
CCDC77	84318	broad.mit.edu	37	chr12	549867	549867	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttagaagaagaacttgccCgaattcgtgaggaagaggga	13	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	549867	A	A	549867	2	1	9	1	0	0	0	0	0	0	0	1	2879	644	23	1		1	CCDC77	12	549867	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7492	549867	133302028	12747	20898											
B4GALNT3	283358	broad.mit.edu	37	chr12	661116	661116	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctctccctgccaagggcGggtccctagcagccctatgt	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	661116	T	T	661116	1	4	9	0	1	0	0	0	0	0	0	0	1273	1131	39	1		1	B4GALNT3	12	661116	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	111249	661116	133190779	12748	20899											
B4GALNT3	283358	broad.mit.edu	37	chr12	661265	661265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaccccaatgactataccCgcctgagccacatggagacc	7	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	661265	A	A	661265	3	1	9	1	0	0	0	0	1	0	0	0	1273	652	23	1	1190	1	B4GALNT3	12	661265	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	661265	133190630	12749	20900											
WNK1	65125	broad.mit.edu	37	chr12	863531	863531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgacggtcctttggatccCaaatttggctcggcgaagcc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	863531	A	A	863531	1	1	9	0	1	0	0	0	0	0	0	0	17504	609	21	2		2	WNK1	12	863531	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	202266	863531	132988364	12750	20901											
WNK1	65125	broad.mit.edu	37	chr12	970188	970188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattctgtaggtagagtctGggtatgtctgtgaaggtgat	14	3	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	970188	T	T	970188	3	4	9	1	0	0	0	0	1	0	0	0	17504	1348	47	2	1656	2	WNK1	12	970188	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106657	970188	132881707	12751	20902											
WNK1	65125	broad.mit.edu	37	chr12	990030	990030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacacctgggtactttccCacagtggtgcagccttatgt	10	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	990030	A	A	990030	2	1	9	1	0	0	0	0	0	0	0	1	17504	581	21	2		2	WNK1	12	990030	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19842	990030	132861865	12752	20903											
WNK1	65125	broad.mit.edu	37	chr12	1009722	1009722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaacatcccagagtccGggcagaatcagctgttacag	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1009722	T	T	1009722	3	4	9	1	0	0	0	0	1	0	0	0	17504	1116	39	1	8133	1	WNK1	12	1009722	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19692	1009722	132842173	12753	20904											
RAD52	5893	broad.mit.edu	37	chr12	1036399	1036399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaggccctcactaacacCataaccaacatcttcatgat	4	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1036399	A	A	1036399	3	1	9	1	0	0	0	0	1	0	0	0	13099	594	21	2	905	2	RAD52	12	1036399	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26677	1036399	132815496	12754	20905											
RAD52	5893	broad.mit.edu	37	chr12	1039018	1039018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacaaatgcacagactccCacgtagaacttgccattgtt	6	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1039018	A	A	1039018	2	1	9	1	0	0	0	0	0	0	0	1	13099	581	21	2		2	RAD52	12	1039018	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2619	1039018	132812877	12755	20906											
RAD52	5893	broad.mit.edu	37	chr12	1042197	1042197	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatggctgtcacgtcctcCaagaattgcttcctcagtcc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1042197	A	A	1042197	4	1	9	1	0	0	0	0	0	1	0	0	13099	603	21	2	1272	2	RAD52	12	1042197	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3179	1042197	132809698	12756	20907											
RAD52	5893	broad.mit.edu	37	chr12	1042218	1042218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaattgcttcctcagtccCagacatcttgattctggttg	8	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1042218	A	A	1042218	3	1	9	1	0	0	0	0	1	0	0	0	13099	594	21	2	1293	2	RAD52	12	1042218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	1042218	132809677	12757	20908											
ERC1	23085	broad.mit.edu	37	chr12	1599351	1599351	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatagcagaccattgtccCgacatcctagagcaagtggt	10	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1599351	A	A	1599351	2	1	9	1	0	0	0	0	0	0	0	1	5252	639	23	1		1	ERC1	12	1599351	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	557133	1599351	132252544	12758	20909											
ADIPOR2	79602	broad.mit.edu	37	chr12	1889639	1889639	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtattcttcctgtgcctGgggatcttttatatgtttcg	10	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1889639	T	T	1889639	2	4	9	1	0	0	0	0	0	0	0	1	319	1335	47	2		2	ADIPOR2	12	1889639	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	290288	1889639	131962256	12759	20910											
ADIPOR2	79602	broad.mit.edu	37	chr12	1895071	1895071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagtcttaataatgtatGggtttctctacccccttctc	6	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1895071	T	T	1895071	1	4	9	0	1	0	0	0	0	0	0	0	319	1363	47	2		2	ADIPOR2	12	1895071	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5432	1895071	131956824	12760	20911											
CACNA1C	775	broad.mit.edu	37	chr12	2229575	2229575	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttccagaagatgattcCaacgccaccaattccaacct	4	16	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2229575	A	A	2229575	2	1	9	1	0	0	0	0	0	0	0	1	2566	581	21	2		2	CACNA1C	12	2229575	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	334504	2229575	131622320	12761	20912											
CACNA1C	775	broad.mit.edu	37	chr12	2566928	2566928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaccaccttctgctgtcCtttgctgaattgccaagaac	6	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2566928	A	A	2566928	1	1	9	0	1	0	0	0	0	0	0	0	2566	696	24	2		2	CACNA1C	12	2566928	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	337353	2566928	131284967	12762	20913											
CACNA1C	775	broad.mit.edu	37	chr12	2566952	2566952	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgaattgccaagaacactCtgcaaagggacctgattcca	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2566952	A	A	2566952	1	1	9	0	1	0	0	0	0	0	0	0	2566	928	32	3		3	CACNA1C	12	2566952	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	2566952	131284943	12763	20914											
CACNA1C	775	broad.mit.edu	37	chr12	2704973	2704973	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaggagaggggctcccaAgagccgactggtgcttcccc	15	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2704973	G	G	2704973	1	3	9	0	1	0	0	0	0	0	0	0	2566	87	3	5		5	CACNA1C	12	2704973	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	138021	2704973	131146922	12764	20915											
ITFG2	55846	broad.mit.edu	37	chr12	2932919	2932919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcctgacctttatctccCtgccaacatcttccaggcct	4	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2932919	A	A	2932919	1	1	9	0	1	0	0	0	0	0	0	0	7940	696	24	2		2	ITFG2	12	2932919	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	227946	2932919	130918976	12765	20916											
ITFG2	55846	broad.mit.edu	37	chr12	2933247	2933247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttacccaccccttcttGgctctcagatcctgacgacc	5	19	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2933247	T	T	2933247	1	4	9	0	1	0	0	0	0	0	0	0	7940	1363	47	2		2	ITFG2	12	2933247	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	328	2933247	130918648	12766	20917											
NRIP2	83714	broad.mit.edu	37	chr12	2939957	2939957	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatcaggtcctgcatccGgggaggctccccctgaagcc	12	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2939957	T	T	2939957	2	4	9	1	0	0	0	0	0	0	0	1	10748	1115	39	1		1	NRIP2	12	2939957	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6710	2939957	130911938	12767	20918											
FOXM1	2305	broad.mit.edu	37	chr12	2968261	2968261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaggacagatttgctcGgggtggaggagatgggcagc	21	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2968261	T	T	2968261	3	4	9	1	0	0	0	0	1	0	0	0	6078	1116	39	1	460	1	FOXM1	12	2968261	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28304	2968261	130883634	12768	20919											
FOXM1	2305	broad.mit.edu	37	chr12	2973505	2973505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttgggggcaatgcggactCgcttgctatggcgggcaagc	16	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2973505	A	A	2973505	3	1	9	1	0	0	0	0	1	0	0	0	6078	884	31	3	1170	3	FOXM1	12	2973505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5244	2973505	130878390	12769	20920											
FOXM1	2305	broad.mit.edu	37	chr12	2981280	2981280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttaacctgtcgctgctcCaggtgacaattctccttttc	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2981280	A	A	2981280	2	1	9	1	0	0	0	0	0	0	0	1	6078	581	21	2		2	FOXM1	12	2981280	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7775	2981280	130870615	12770	20921											
FOXM1	2305	broad.mit.edu	37	chr12	2983574	2983574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctctgatgtttcacttGgggcattttgaacaggaagg	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2983574	T	T	2983574	3	4	9	1	0	0	0	0	1	0	0	0	6078	1348	47	2	2370	2	FOXM1	12	2983574	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2294	2983574	130868321	12771	20922											
TULP3	7289	broad.mit.edu	37	chr12	3030011	3030011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaagccaggctacgtcGggcaaagccaagggccagtg	14	12	0	1	rs139350068		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3030011	T	T	3030011	3	4	9	1	0	0	0	0	1	0	0	0	16901	1116	39	1	186	1	TULP3	12	3030011	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46437	3030011	130821884	12772	20923											
TULP3	7289	broad.mit.edu	37	chr12	3047297	3047297	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaaccatgacagtttgctCtcaaggtggcagaacagaac	10	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3047297	A	A	3047297	2	1	9	1	0	0	0	0	0	0	0	1	16901	900	32	3		3	TULP3	12	3047297	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17286	3047297	130804598	12773	20924											
TEAD4	7004	broad.mit.edu	37	chr12	3120220	3120220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccggacagggaagaccCgcaccaggaagcaggtgggc	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3120220	A	A	3120220	3	1	9	1	0	0	0	0	1	0	0	0	15863	652	23	1	283	1	TEAD4	12	3120220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72923	3120220	130731675	12774	20925											
TEAD4	7004	broad.mit.edu	37	chr12	3149651	3149651	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgaaagaatgagagactCggggagcagggaggggggaa	21	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3149651	A	A	3149651	1	1	9	0	1	0	0	0	0	0	0	0	15863	899	31	3		3	TEAD4	12	3149651	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	29431	3149651	130702244	12775	20926											
PRMT8	56341	broad.mit.edu	37	chr12	3686076	3686076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgacatgacctgcatccGggacgtggccatgaaggagc	13	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3686076	T	T	3686076	3	4	9	1	0	0	0	0	1	0	0	0	12648	1116	39	1	778	1	PRMT8	12	3686076	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	536425	3686076	130165819	12776	20927											
C12orf5	57103	broad.mit.edu	37	chr12	4460439	4460439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggactgtttcagaaatacGgggttgtagaaggcaaagcg	14	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4460439	T	T	4460439	3	4	9	1	0	0	0	0	1	0	0	0	1707	1116	39	1	295	1	C12orf5	12	4460439	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	774363	4460439	129391456	12777	20928											
C12orf4	57102	broad.mit.edu	37	chr12	4639109	4639109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaacaaagtaattatgttcCaaatttaagagagtttcaga	6	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4639109	A	A	4639109	3	1	9	1	0	0	0	0	1	0	0	0	1698	593	21	2	1270	2	C12orf4	12	4639109	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	178670	4639109	129212786	12778	20929											
DYRK4	8798	broad.mit.edu	37	chr12	4705426	4705426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaatgagctggtggccCtgaaaatcatcaggaacaag	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4705426	A	A	4705426	3	1	9	1	0	0	0	0	1	0	0	0	4898	680	24	2	404	2	DYRK4	12	4705426	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66317	4705426	129146469	12779	20930											
AKAP3	10566	broad.mit.edu	37	chr12	4737317	4737317	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctctctggcataatctcCattacgagattcaaacactt	4	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4737317	A	A	4737317	4	1	9	1	0	0	0	0	0	1	0	0	452	603	21	2	1818	2	AKAP3	12	4737317	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31891	4737317	129114578	12780	20931											
NDUFA9	4704	broad.mit.edu	37	chr12	4764024	4764024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtaatcataccctatcGgtgtgataaatatgacatca	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4764024	T	T	4764024	3	4	9	1	0	0	0	0	1	0	0	0	10367	1116	39	1	264	1	NDUFA9	12	4764024	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26707	4764024	129087871	12781	20932											
NDUFA9	4704	broad.mit.edu	37	chr12	4791379	4791379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttttatagtcccagtcGgtacctccttttccacctgg	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4791379	T	T	4791379	3	4	9	1	0	0	0	0	1	0	0	0	10367	1116	39	1	843	1	NDUFA9	12	4791379	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27355	4791379	129060516	12782	20933											
KCNA1	3736	broad.mit.edu	37	chr12	5021285	5021285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcctgccccagcaagacGgacttcttcaaaaacatcat	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021285	T	T	5021285	2	4	9	1	0	0	0	0	0	0	0	1	8071	1103	39	1		1	KCNA1	12	5021285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	229906	5021285	128830610	12783	20934											
KCNA1	3736	broad.mit.edu	37	chr12	5021708	5021708	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaattggaggcaagatcgtGggctccttgtgtgccatcgc	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021708	T	T	5021708	2	4	9	1	0	0	0	0	0	0	0	1	8071	1335	47	2		2	KCNA1	12	5021708	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	423	5021708	128830187	12784	20935											
KCNA1	3736	broad.mit.edu	37	chr12	5022023	5022023	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataagagcaagctactgacCgatgtttaaaaaacaaaggc	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5022023	A	A	5022023	2	1	9	1	0	0	0	0	0	0	0	1	8071	639	23	1		1	KCNA1	12	5022023	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	315	5022023	128829872	12785	20936											
ANO2	57101	broad.mit.edu	37	chr12	5687209	5687209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcgtctggctcactccCgccctcggcccagtgatgac	11	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5687209	A	A	5687209	1	1	9	0	1	0	0	0	0	0	0	0	697	667	23	1		1	ANO2	12	5687209	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	665186	5687209	128164686	12786	20937											
ANO2	57101	broad.mit.edu	37	chr12	5963267	5963267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggccagcacctgccacGgggcgtgtatccggacaaag	13	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5963267	T	T	5963267	3	4	9	1	0	0	0	0	1	0	0	0	697	1116	39	1	2525	1	ANO2	12	5963267	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	276058	5963267	127888628	12787	20938											
ANO2	57101	broad.mit.edu	37	chr12	6055341	6055341	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcatgaagattttctctcCtatattgataaggtaggctg	10	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6055341	A	A	6055341	1	1	9	1	0	0	0	0	0	0	0	0	697	696	24	2		2	ANO2	12	6055341	Translation_Start_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	92074	6055341	127796554	12788	20939											
PLEKHG6	55200	broad.mit.edu	37	chr12	6424663	6424663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggtcgcacttaacagctGgtacttgccattctaattat	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6424663	T	T	6424663	1	4	9	0	1	0	0	0	0	0	0	0	12169	1363	47	2		2	PLEKHG6	12	6424663	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	369322	6424663	127427232	12789	20940											
PLEKHG6	55200	broad.mit.edu	37	chr12	6436520	6436520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacctcagactctggctacGgcactttgatcccaggcacc	8	15	2	2	rs141304328		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6436520	T	T	6436520	3	4	9	1	0	0	0	0	1	0	0	0	12169	1116	39	1	1871	1	PLEKHG6	12	6436520	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11857	6436520	127415375	12790	20941											
SCNN1A	6337	broad.mit.edu	37	chr12	6458207	6458207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcatcaaggtcactccCatatgcttcaggcttacagg	10	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6458207	A	A	6458207	1	1	9	0	1	0	0	0	0	0	0	0	14040	609	21	2		2	SCNN1A	12	6458207	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21687	6458207	127393688	12791	20942											
VAMP1	6843	broad.mit.edu	37	chr12	6575359	6575359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttccaaactcctagatttGgaaactttcagagaaacagc	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6575359	T	T	6575359	1	4	9	0	1	0	0	0	0	0	0	0	17239	1363	47	2		2	VAMP1	12	6575359	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	117152	6575359	127276536	12792	20943											
MRPL51	51258	broad.mit.edu	37	chr12	6601547	6601547	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaccattttcctctttcGgatacaacgttgcaattcat	4	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6601547	T	T	6601547	2	4	9	1	0	0	0	0	0	0	0	1	9909	1124	39	1		1	MRPL51	12	6601547	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26188	6601547	127250348	12793	20944											
NCAPD2	9918	broad.mit.edu	37	chr12	6623502	6623502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagaaccgccccactcGggaagccataacacacctgc	8	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6623502	T	T	6623502	3	4	9	1	0	0	0	0	1	0	0	0	10300	1116	39	1	681	1	NCAPD2	12	6623502	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21955	6623502	127228393	12794	20945											
NCAPD2	9918	broad.mit.edu	37	chr12	6623525	6623525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccataacacacctgcttGgtgtagccttgacccgttat	8	12	0	1	rs140685494		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6623525	T	T	6623525	3	4	9	1	0	0	0	0	1	0	0	0	10300	1348	47	2	704	2	NCAPD2	12	6623525	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	6623525	127228370	12795	20946											
NCAPD2	9918	broad.mit.edu	37	chr12	6630997	6630997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacaagaaaagaatccccGggagtctacaggaaacatgg	10	10	1	2	rs145828257	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6630997	T	T	6630997	3	4	9	1	0	0	0	0	1	0	0	0	10300	1116	39	1	1802	1	NCAPD2	12	6630997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7472	6630997	127220898	12796	20947											
NCAPD2	9918	broad.mit.edu	37	chr12	6631945	6631945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttctgtcgttaggtattGggggagttttgtgaagtaga	16	2	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6631945	T	T	6631945	1	4	9	0	1	0	0	0	0	0	0	0	10300	1363	47	2		2	NCAPD2	12	6631945	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	948	6631945	127219950	12797	20948											
NCAPD2	9918	broad.mit.edu	37	chr12	6637828	6637828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctcggtccccatgaccCgcaattccattcctagtctc	7	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6637828	A	A	6637828	1	1	9	0	1	0	0	0	0	0	0	0	10300	667	23	1		1	NCAPD2	12	6637828	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5883	6637828	127214067	12798	20949											
NCAPD2	9918	broad.mit.edu	37	chr12	6640148	6640148	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttgtcacaccagagccCcgccgtactacccgtcggca	9	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6640148	A	A	6640148	2	1	9	1	0	0	0	0	0	0	0	1	10300	610	22	2		2	NCAPD2	12	6640148	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2320	6640148	127211747	12799	20950											
NCAPD2	9918	broad.mit.edu	37	chr12	6640255	6640255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaaggtatgatgctccCgcctgttcccggccgagaag	14	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6640255	A	A	6640255	1	1	9	0	1	0	0	0	0	0	0	0	10300	667	23	1		1	NCAPD2	12	6640255	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	107	6640255	127211640	12800	20951											
IFFO1	25900	broad.mit.edu	37	chr12	6650692	6650692	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctaccggtctccagactgGgtgatgagccggcggcaggt	16	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6650692	C	C	6650692	2	2	9	1	0	0	0	0	0	0	0	1	7580	1219	43	4		4	IFFO1	12	6650692	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10437	6650692	127201203	12801	20952											
IFFO1	25900	broad.mit.edu	37	chr12	6657246	6657246	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacctctatctggtcaatGgtctcctgatactccttctc	5	14	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6657246	T	T	6657246	2	4	9	1	0	0	0	0	0	0	0	1	7580	1335	47	2		2	IFFO1	12	6657246	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6554	6657246	127194649	12802	20953											
IFFO1	25900	broad.mit.edu	37	chr12	6657811	6657811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtggcgtcggtgctgcGggagcacggcctgcggactc	18	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6657811	T	T	6657811	1	4	9	0	1	0	0	0	0	0	0	0	7580	1131	39	1		1	IFFO1	12	6657811	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	565	6657811	127194084	12803	20954											
NOP2	4839	broad.mit.edu	37	chr12	6666512	6666512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcgttgctttagcttccCagtcacctttggctccctga	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6666512	A	A	6666512	3	1	9	1	0	0	0	0	1	0	0	0	10633	594	21	2	356	2	NOP2	12	6666512	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8701	6666512	127185383	12804	20955											
CHD4	1108	broad.mit.edu	37	chr12	6690214	6690214	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggatacctttacctttGggctctgtctccataggttc	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6690214	T	T	6690214	2	4	9	1	0	0	0	0	0	0	0	1	3358	1335	47	2		2	CHD4	12	6690214	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23702	6690214	127161681	12805	20956											
CHD4	1108	broad.mit.edu	37	chr12	6690447	6690447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatggcattcagtcacccCatctcttacctcaatggcag	7	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6690447	A	A	6690447	1	1	9	0	1	0	0	0	0	0	0	0	3358	609	21	2		2	CHD4	12	6690447	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	233	6690447	127161448	12806	20957											
CHD4	1108	broad.mit.edu	37	chr12	6692525	6692525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgtttaatgatttccCgttctacctcctcttcctcc	3	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6692525	A	A	6692525	3	1	9	1	0	0	0	0	1	0	0	0	3358	652	23	1	1899	1	CHD4	12	6692525	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2078	6692525	127159370	12807	20958											
CHD4	1108	broad.mit.edu	37	chr12	6700765	6700765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatctgcaaaagaagcacGgtttaattatggaagagtca	10	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6700765	T	T	6700765	1	4	9	0	1	0	0	0	0	0	0	0	3358	1131	39	1		1	CHD4	12	6700765	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8240	6700765	127151130	12808	20959											
CHD4	1108	broad.mit.edu	37	chr12	6704537	6704537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggcctctccaacttcCgaagcttcaccttcttgagc	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6704537	A	A	6704537	3	1	9	1	0	0	0	0	1	0	0	0	3358	652	23	1	3762	1	CHD4	12	6704537	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3772	6704537	127147358	12809	20960											
CHD4	1108	broad.mit.edu	37	chr12	6707095	6707095	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtggatcatcatccactcGggttttatcccatagcgata	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6707095	T	T	6707095	2	4	9	1	0	0	0	0	0	0	0	1	3358	1103	39	1		1	CHD4	12	6707095	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2558	6707095	127144800	12810	20961											
CHD4	1108	broad.mit.edu	37	chr12	6709098	6709098	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtggtcatcctcctcttcGaggtctcccccaacctcttc	7	17	4	0	rs142800397		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6709098	T	T	6709098	2	4	9	1	0	0	0	0	0	0	0	1	3358	1045	37	3		3	CHD4	12	6709098	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2003	6709098	127142797	12811	20962											
CHD4	1108	broad.mit.edu	37	chr12	6710207	6710207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcccttgggcttcctcCgagcattgggacctaaaatc	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6710207	A	A	6710207	3	1	9	1	0	0	0	0	1	0	0	0	3358	652	23	1	5062	1	CHD4	12	6710207	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1109	6710207	127141688	12812	20963											
CHD4	1108	broad.mit.edu	37	chr12	6710898	6710898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaatgtcttccatgcccCagtcttccaggagctgagca	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6710898	A	A	6710898	3	1	9	1	0	0	0	0	1	0	0	0	3358	595	21	2	5409	2	CHD4	12	6710898	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	691	6710898	127140997	12813	20964											
ZNF384	171017	broad.mit.edu	37	chr12	6778186	6778186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaggagagaagaaacGgagcactcactgatgtgtat	14	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6778186	T	T	6778186	1	4	9	0	1	0	0	0	0	0	0	0	18001	1131	39	1		1	ZNF384	12	6778186	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	67288	6778186	127073709	12814	20965											
ZNF384	171017	broad.mit.edu	37	chr12	6787948	6787948	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctacttctttgtatcccCcacaatgcctagcacattgc	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6787948	A	A	6787948	1	1	9	0	1	0	0	0	0	0	0	0	18001	638	22	2		2	ZNF384	12	6787948	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9762	6787948	127063947	12815	20966											
GPR162	27239	broad.mit.edu	37	chr12	6936107	6936107	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggggtcctggcttcttccGggaggagatcaccaccttca	12	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6936107	C	C	6936107	3	2	9	1	0	0	0	0	1	0	0	0	6731	1116	39	4	1538	4	GPR162	12	6936107	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	148159	6936107	126915788	12816	20967											
USP5	8078	broad.mit.edu	37	chr12	6970156	6970156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcctaatgaagtgttcCgcttcttggtggaggaaaag	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6970156	A	A	6970156	3	1	9	1	0	0	0	0	1	0	0	0	17208	652	23	1	1430	1	USP5	12	6970156	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34049	6970156	126881739	12817	20968											
USP5	8078	broad.mit.edu	37	chr12	6971606	6971606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaccctggggattgtctGggtaccagcacagtctctct	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6971606	T	T	6971606	1	4	9	0	1	0	0	0	0	0	0	0	17208	1363	47	2		2	USP5	12	6971606	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1450	6971606	126880289	12818	20969											
USP5	8078	broad.mit.edu	37	chr12	6972468	6972468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcactccggatgagccCaaaggtagccttggtttcta	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6972468	A	A	6972468	2	1	9	1	0	0	0	0	0	0	0	1	17208	581	21	2		2	USP5	12	6972468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	862	6972468	126879427	12819	20970											
TPI1	7167	broad.mit.edu	37	chr12	6978306	6978306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccacgtgggtggtcctgGggcactcagagagaaggcat	17	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6978306	T	T	6978306	3	4	9	1	0	0	0	0	1	0	0	0	16527	1232	43	2	404	2	TPI1	12	6978306	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5838	6978306	126873589	12820	20971											
TPI1	7167	broad.mit.edu	37	chr12	6978443	6978443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattgggcagaaagtggccCatgctctggcagagggactc	15	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6978443	A	A	6978443	3	1	9	1	0	0	0	0	1	0	0	0	16527	594	21	2	471	2	TPI1	12	6978443	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	137	6978443	126873452	12821	20972											
PTPN6	5777	broad.mit.edu	37	chr12	7064609	7064609	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacaagaagcaggagtcCgaggatacagccaaggctgg	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7064609	A	A	7064609	2	1	9	1	0	0	0	0	0	0	0	1	12900	639	23	1		1	PTPN6	12	7064609	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	86166	7064609	126787286	12822	20973											
LPCAT3	10162	broad.mit.edu	37	chr12	7086724	7086724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcatcagcatcttgtccCttatattccccttcaccccc	3	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7086724	A	A	7086724	1	1	9	0	1	0	0	0	0	0	0	0	8999	696	24	2		2	LPCAT3	12	7086724	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22115	7086724	126765171	12823	20974											
C1S	716	broad.mit.edu	37	chr12	7172505	7172505	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtgtgaataccagatcCggttggagaaagggttccaa	13	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7172505	A	A	7172505	2	1	9	1	0	0	0	0	0	0	0	1	1994	643	23	1		1	C1S	12	7172505	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85781	7172505	126679390	12824	20975											
C1S	716	broad.mit.edu	37	chr12	7173850	7173850	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctaaggaagacactccCaattctgtttgggagcctgc	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7173850	A	A	7173850	2	1	9	1	0	0	0	0	0	0	0	1	1994	581	21	2		2	C1S	12	7173850	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1345	7173850	126678045	12825	20976											
C1S	716	broad.mit.edu	37	chr12	7177214	7177214	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggataattggaggatcCgatgcagatattaaaaactt	10	5	0	2	rs148573885	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7177214	A	A	7177214	2	1	9	1	0	0	0	0	0	0	0	1	1994	639	23	1		1	C1S	12	7177214	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3364	7177214	126674681	12826	20977											
CLSTN3	9746	broad.mit.edu	37	chr12	7289412	7289412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgacacttgtgcctcctGgggctcccacaggtgctgcc	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7289412	T	T	7289412	1	4	9	0	1	0	0	0	0	0	0	0	3595	1363	47	2		2	CLSTN3	12	7289412	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	112198	7289412	126562483	12827	20978											
ACSM4	341392	broad.mit.edu	37	chr12	7456921	7456921	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtagacaaagtcctttGggaaccatgaagattttttt	9	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7456921	T	T	7456921	1	4	9	0	1	0	0	0	0	0	0	0	186	1363	47	2		2	ACSM4	12	7456921	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	167509	7456921	126394974	12828	20979											
CD163L1	283316	broad.mit.edu	37	chr12	7528342	7528342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggatacaagtgtcttcCggatgttgaacaatggggca	13	7	1	1	rs146146000		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7528342	A	A	7528342	2	1	9	1	0	0	0	0	0	0	0	1	2998	639	23	1		1	CD163L1	12	7528342	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71421	7528342	126323553	12829	20980											
CD163L1	283316	broad.mit.edu	37	chr12	7591740	7591740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttctcttctctgctgtcGgaatgtagcccttcattgtc	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7591740	T	T	7591740	1	4	9	0	1	0	0	0	0	0	0	0	2998	1131	39	1		1	CD163L1	12	7591740	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	63398	7591740	126260155	12830	20981											
CD163L1	283316	broad.mit.edu	37	chr12	7592309	7592309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcctccaggtgagtctcGggctcccaggtatcgtcatc	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7592309	T	T	7592309	1	4	9	0	1	0	0	0	0	0	0	0	2998	1131	39	1		1	CD163L1	12	7592309	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	569	7592309	126259586	12831	20982											
CD163	9332	broad.mit.edu	37	chr12	7637648	7637648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattatcagaagatgatagcGgggctgcagaatggaatttt	12	5	1	4	rs116730599	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7637648	T	T	7637648	1	4	9	0	1	0	0	0	0	0	0	0	2997	1131	39	1		1	CD163	12	7637648	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45339	7637648	126214247	12832	20983											
CD163	9332	broad.mit.edu	37	chr12	7639230	7639230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggccctgttccttcccCaaaatgagcagaaccagtgg	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7639230	A	A	7639230	3	1	9	1	0	0	0	0	1	0	0	0	2997	594	21	2	1175	2	CD163	12	7639230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1582	7639230	126212665	12833	20984											
CD163	9332	broad.mit.edu	37	chr12	7651599	7651599	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattggtccagagccttctcCaaaattagatgaaccagaga	9	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7651599	A	A	7651599	4	1	9	1	0	0	0	0	0	1	0	0	2997	603	21	2	2879	2	CD163	12	7651599	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12369	7651599	126200296	12834	20985											
CLEC4C	170482	broad.mit.edu	37	chr12	7894076	7894076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgatactgttgatactctCgtaacttggacagcctcttg	9	9	2	2	rs149796875		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7894076	A	A	7894076	3	1	9	1	0	0	0	0	1	0	0	0	3545	884	31	3	481	3	CLEC4C	12	7894076	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	242477	7894076	125957819	12835	20986											
SLC2A14	144195	broad.mit.edu	37	chr12	8023633	8023633	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgacaagctggcttcacCgcggaagaaccccatggatg	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8023633	A	A	8023633	1	1	9	0	1	0	0	0	0	0	0	0	14657	667	23	1		1	SLC2A14	12	8023633	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	129557	8023633	125828262	12836	20987											
FOXJ2	55810	broad.mit.edu	37	chr12	8196336	8196336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacctgccctgacatttccCgaaagagaagacaccctcca	6	16	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8196336	A	A	8196336	2	1	9	1	0	0	0	0	0	0	0	1	6072	644	23	1		1	FOXJ2	12	8196336	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	172703	8196336	125655559	12837	20988											
FOXJ2	55810	broad.mit.edu	37	chr12	8196375	8196375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgatgatgtaagttccCagctcatgaggagatgccat	11	8	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8196375	A	A	8196375	1	1	9	0	1	0	0	0	0	0	0	0	6072	609	21	2		2	FOXJ2	12	8196375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	8196375	125655520	12838	20989											
ZNF705A	440077	broad.mit.edu	37	chr12	8327126	8327126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgttagaacagcttcccCatatctcactctaatctctt	4	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8327126	A	A	8327126	1	1	9	0	1	0	0	0	0	0	0	0	18235	609	21	2		2	ZNF705A	12	8327126	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	130751	8327126	125524769	12839	20990											
FAM90A1	55138	broad.mit.edu	37	chr12	8375153	8375153	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccacgaggagaggctcGgggccctggtgcctgactgc	15	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8375153	T	T	8375153	2	4	9	1	0	0	0	0	0	0	0	1	5703	1103	39	1		1	FAM90A1	12	8375153	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48027	8375153	125476742	12840	20991											
FAM90A1	55138	broad.mit.edu	37	chr12	8376755	8376755	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccttccagcacttcatGgggcacctggtacttctggc	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8376755	T	T	8376755	2	4	9	1	0	0	0	0	0	0	0	1	5703	1335	47	2		2	FAM90A1	12	8376755	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1602	8376755	125475140	12841	20992											
CLEC6A	93978	broad.mit.edu	37	chr12	8610414	8610414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggttcttcatctagtttGttcattgttgtaagcttcct	8	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8610414	T	T	8610414	1	4	9	0	1	0	0	0	0	0	0	0	3552	1392	48	3		3	CLEC6A	12	8610414	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	233659	8610414	125241481	12842	20993											
RIMKLB	57494	broad.mit.edu	37	chr12	8925972	8925972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagcagctagctatccaGgtgtctaatatcctggggat	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8925972	T	T	8925972	3	4	9	1	0	0	0	0	1	0	0	0	13477	991	35	2	771	2	RIMKLB	12	8925972	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	315558	8925972	124925923	12843	20994											
A2ML1	144568	broad.mit.edu	37	chr12	9002824	9002824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagaggattctcaggtcCgccagtacttcccagagacc	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9002824	A	A	9002824	3	1	9	1	0	0	0	0	1	0	0	0	5	652	23	1	2258	1	A2ML1	12	9002824	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76852	9002824	124849071	12844	20995											
A2ML1	144568	broad.mit.edu	37	chr12	9004880	9004880	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcagacctccagttgtctCtgtgctgatgacgcaaaaac	8	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9004880	A	A	9004880	2	1	9	1	0	0	0	0	0	0	0	1	5	900	32	3		3	A2ML1	12	9004880	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2056	9004880	124847015	12845	20996											
A2ML1	144568	broad.mit.edu	37	chr12	9010602	9010602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattcatcttcattgatccCaagaacatccaggatgctct	5	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9010602	A	A	9010602	2	1	9	1	0	0	0	0	0	0	0	1	5	581	21	2		2	A2ML1	12	9010602	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5722	9010602	124841293	12846	20997											
PZP	5858	broad.mit.edu	37	chr12	9305744	9305744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatacacacatctttcccCagttactgttatgacatatt	4	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9305744	A	A	9305744	3	1	9	1	0	0	0	0	1	0	0	0	12977	594	21	2	506	2	PZP	12	9305744	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	295142	9305744	124546151	12847	20998											
PZP	5858	broad.mit.edu	37	chr12	9346674	9346674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtctttctatacttaccCggacaaaaagtttattaacc	4	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9346674	A	A	9346674	3	1	9	1	0	0	0	0	1	0	0	0	12977	666	23	1	3299	1	PZP	12	9346674	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40930	9346674	124505221	12848	20999											
CD69	969	broad.mit.edu	37	chr12	9907249	9907249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctttttcagtccaaccCagtgttcctctctacctgcg	6	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9907249	A	A	9907249	3	1	9	1	0	0	0	0	1	0	0	0	3061	595	21	2	182	2	CD69	12	9907249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	560575	9907249	123944646	12849	21000											
CLEC12A	160364	broad.mit.edu	37	chr12	10131677	10131677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgtgtatgtactgcccCtgtttttgtcaagaggaagt	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10131677	A	A	10131677	1	1	9	0	1	0	0	0	0	0	0	0	3529	696	24	2		2	CLEC12A	12	10131677	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	224428	10131677	123720218	12850	21001											
CLEC1B	51266	broad.mit.edu	37	chr12	10147757	10147757	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatattttctgagataaccGagccatcctcccacttccag	5	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10147757	T	T	10147757	4	4	9	1	0	0	0	0	0	1	0	0	3538	1059	37	3	170	3	CLEC1B	12	10147757	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16080	10147757	123704138	12851	21002											
CLEC1B	51266	broad.mit.edu	37	chr12	10147769	10147769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataaccgagccatcctccCacttccagacctcattcgac	5	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10147769	A	A	10147769	3	1	9	1	0	0	0	0	1	0	0	0	3538	595	21	2	182	2	CLEC1B	12	10147769	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	10147769	123704126	12852	21003											
CLEC1B	51266	broad.mit.edu	37	chr12	10151643	10151643	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagcattcttaccggagatGagagctggtttccgagtttt	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10151643	T	T	10151643	2	4	9	1	0	0	0	0	0	0	0	1	3538	1277	45	3		3	CLEC1B	12	10151643	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3874	10151643	123700252	12853	21004											
CLEC1B	51266	broad.mit.edu	37	chr12	10151673	10151673	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgagttttaatatttaaGgtgatgtatccatcttcatc	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10151673	T	T	10151673	2	4	9	1	0	0	0	0	0	0	0	1	3538	987	35	2		2	CLEC1B	12	10151673	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	10151673	123700222	12854	21005											
CLEC1B	51266	broad.mit.edu	37	chr12	10151707	10151707	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcctgcatggcttccCgagtactgcaactgagctca	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10151707	A	A	10151707	1	1	9	0	1	0	0	0	0	0	0	0	3538	667	23	1		1	CLEC1B	12	10151707	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	10151707	123700188	12855	21006											
CLEC12B	387837	broad.mit.edu	37	chr12	10167831	10167831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcttcagtttatattattGggtataatttccttttcaga	6	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10167831	T	T	10167831	1	4	9	0	1	0	0	0	0	0	0	0	3530	1363	47	2		2	CLEC12B	12	10167831	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16124	10167831	123684064	12856	21007											
CLEC1A	51267	broad.mit.edu	37	chr12	10224051	10224051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttgagaagatcatccCattaaggatggccacacagt	9	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10224051	A	A	10224051	3	1	9	1	0	0	0	0	1	0	0	0	3537	594	21	2	122	2	CLEC1A	12	10224051	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56220	10224051	123627844	12857	21008											
CSDA	8531	broad.mit.edu	37	chr12	10856662	10856662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacatacctacggtaccttGggcggtaagttggatttcga	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10856662	T	T	10856662	3	4	9	1	0	0	0	0	1	0	0	0	3961	1348	47	2	264	2	CSDA	12	10856662	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	632611	10856662	122995233	12858	21009											
TAS2R10	50839	broad.mit.edu	37	chr12	10978606	10978606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattgattaccaattaccCaaaagtaactaatatattca	3	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10978606	A	A	10978606	3	1	9	1	0	0	0	0	1	0	0	0	15685	595	21	2	664	2	TAS2R10	12	10978606	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	121944	10978606	122873289	12859	21010											
PRR4	11272	broad.mit.edu	37	chr12	10999781	10999781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgacggtgtcctcgtcGgggtggtcgttgctgatttt	16	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10999781	T	T	10999781	2	4	9	1	0	0	0	0	0	0	0	1	12705	1124	39	1		1	PRR4	12	10999781	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21175	10999781	122852114	12860	21011											
TAS2R50	259296	broad.mit.edu	37	chr12	11138519	11138519	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatacacacacaatgtccCacttgtgaatctagagagtt	7	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11138519	A	A	11138519	1	1	9	0	1	0	0	0	0	0	0	0	15703	609	21	2		2	TAS2R50	12	11138519	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	138738	11138519	122713376	12861	21012											
TAS2R50	259296	broad.mit.edu	37	chr12	11139197	11139197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaatggttggttacaaccCaggcattataagaagtaatt	9	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11139197	A	A	11139197	3	1	9	1	0	0	0	0	1	0	0	0	15703	595	21	2	640	2	TAS2R50	12	11139197	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	678	11139197	122712698	12862	21013											
TAS2R50	259296	broad.mit.edu	37	chr12	11139298	11139298	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagagcaaaccaattctGgagaccgccagagcagtgag	12	12	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11139298	T	T	11139298	2	4	9	1	0	0	0	0	0	0	0	1	15703	1335	47	2		2	TAS2R50	12	11139298	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101	11139298	122712597	12863	21014											
TAS2R50	259296	broad.mit.edu	37	chr12	11139402	11139402	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccattggcaaagtttcCgagaacaaataaaaccatta	7	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11139402	A	A	11139402	4	1	9	1	0	0	0	0	0	1	0	0	15703	661	23	1	845	1	TAS2R50	12	11139402	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	11139402	122712493	12864	21015											
TAS2R20	259295	broad.mit.edu	37	chr12	11149832	11149832	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctgggatcttgagatcCtttgccatggagctgcatct	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11149832	A	A	11149832	4	1	9	1	0	0	0	0	0	1	0	0	15690	690	24	2	290	2	TAS2R20	12	11149832	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10430	11149832	122702063	12865	21016											
TAS2R31	259290	broad.mit.edu	37	chr12	11183028	11183028	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagatgaaggcttctctcCtttcacccagtacctcactt	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11183028	A	A	11183028	4	1	9	1	0	0	0	0	0	1	0	0	15693	690	24	2	26	2	TAS2R31	12	11183028	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33196	11183028	122668867	12866	21017											
TAS2R31	259290	broad.mit.edu	37	chr12	11183779	11183779	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaccaactctggagacCgccagagcagtgagaatctg	11	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11183779	A	A	11183779	2	1	9	1	0	0	0	0	0	0	0	1	15693	639	23	1		1	TAS2R31	12	11183779	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	751	11183779	122668116	12867	21018											
PRB3	5544	broad.mit.edu	37	chr12	11420620	11420620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactggtttcctccttgtGggggtggtccttctggcttt	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11420620	T	T	11420620	3	4	9	1	0	0	0	0	1	0	0	0	12550	1348	47	2	374	2	PRB3	12	11420620	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	236841	11420620	122431275	12868	21019											
PRB3	5544	broad.mit.edu	37	chr12	11420644	11420644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtccttctggctttcccGgatgaggcgggggaccttgg	17	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11420644	T	T	11420644	3	4	9	1	0	0	0	0	1	0	0	0	12550	1116	39	1	398	1	PRB3	12	11420644	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	11420644	122431251	12869	21020											
PRB3	5544	broad.mit.edu	37	chr12	11421122	11421122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcattcactgaatagttgcCgcaaatttttacagtaacgc	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11421122	A	A	11421122	1	1	9	0	1	0	0	0	0	0	0	0	12550	667	23	1		1	PRB3	12	11421122	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	478	11421122	122430773	12870	21021											
PRB4	5545	broad.mit.edu	37	chr12	11461356	11461356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgttgccttcttgttgGggtggtccttgtggctttcc	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11461356	T	T	11461356	2	4	9	1	0	0	0	0	0	0	0	1	12551	1219	43	2		2	PRB4	12	11461356	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40234	11461356	122390539	12871	21022											
PRB4	5545	broad.mit.edu	37	chr12	11461397	11461397	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagatcgggcacttcGggacttgtttccttcctgtg	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11461397	T	T	11461397	2	4	9	1	0	0	0	0	0	0	0	1	12551	1124	39	1		1	PRB4	12	11461397	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41	11461397	122390498	12872	21023											
PRB1	5542	broad.mit.edu	37	chr12	11506712	11506712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggaggtgggggaccttGgggctggttacctccttgtg	19	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11506712	T	T	11506712	3	4	9	1	0	0	0	0	1	0	0	0	12548	1357	47	2	674	2	PRB1	12	11506712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45315	11506712	122345183	12873	21024											
PRB2	653247	broad.mit.edu	37	chr12	11546365	11546365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtggctttcctggaggtGggggaccttgaggtttgttg	17	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11546365	T	T	11546365	3	4	9	1	0	0	0	0	1	0	0	0	12549	1348	47	2	607	2	PRB2	12	11546365	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39653	11546365	122305530	12874	21025											
BCL2L14	79370	broad.mit.edu	37	chr12	12240110	12240110	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagccagatgaagttctGggaagggcctctcagcacca	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12240110	T	T	12240110	1	4	9	0	1	0	0	0	0	0	0	0	1377	1363	47	2		2	BCL2L14	12	12240110	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	693745	12240110	121611785	12875	21026											
LRP6	4040	broad.mit.edu	37	chr12	12300419	12300419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgaaaaagaggacctccCgttctgtcccatccaaagca	7	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12300419	A	A	12300419	3	1	9	1	0	0	0	0	1	0	0	0	9049	652	23	1	1599	1	LRP6	12	12300419	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60309	12300419	121551476	12876	21027											
LRP6	4040	broad.mit.edu	37	chr12	12300443	12300443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcccatccaaagcagccCgttcaattttaggagacctt	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12300443	A	A	12300443	3	1	9	1	0	0	0	0	1	0	0	0	9049	652	23	1	1623	1	LRP6	12	12300443	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	12300443	121551452	12877	21028											
LRP6	4040	broad.mit.edu	37	chr12	12301919	12301919	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctcgaggtctgtcctgctCgcctttcagcaccactccaa	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12301919	A	A	12301919	4	1	9	1	0	0	0	0	0	1	0	0	9049	893	31	3	1718	3	LRP6	12	12301919	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1476	12301919	121549976	12878	21029											
LRP6	4040	broad.mit.edu	37	chr12	12302070	12302070	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctgactcggaactgagctCacaaccacagtaaagcccta	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12302070	A	A	12302070	2	1	9	1	0	0	0	0	0	0	0	1	9049	813	29	3		3	LRP6	12	12302070	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	151	12302070	121549825	12879	21030											
LRP6	4040	broad.mit.edu	37	chr12	12303861	12303861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggtcatagtcaatggccCggacattccgaaggctgtgg	15	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12303861	A	A	12303861	3	1	9	1	0	0	0	0	1	0	0	0	9049	652	23	1	1982	1	LRP6	12	12303861	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1791	12303861	121548034	12880	21031											
LRP6	4040	broad.mit.edu	37	chr12	12317470	12317470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagatggctacatccccCgttttcctcagcacaggggt	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12317470	A	A	12317470	3	1	9	1	0	0	0	0	1	0	0	0	9049	652	23	1	3112	1	LRP6	12	12317470	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13609	12317470	121534425	12881	21032											
LRP6	4040	broad.mit.edu	37	chr12	12334005	12334005	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatctaacacaatagcccGgggttcctctaagtcctctg	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12334005	T	T	12334005	2	4	9	1	0	0	0	0	0	0	0	1	9049	1115	39	1		1	LRP6	12	12334005	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16535	12334005	121517890	12882	21033											
MANSC1	54682	broad.mit.edu	37	chr12	12483754	12483754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagaaagtgtgtctctcCatgagatatcggtgggcttt	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12483754	A	A	12483754	3	1	9	1	0	0	0	0	1	0	0	0	9316	595	21	2	796	2	MANSC1	12	12483754	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149749	12483754	121368141	12883	21034											
LOH12CR1	118426	broad.mit.edu	37	chr12	12514234	12514234	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaacgtcagcaacgatccCgatgtcatcaagttgcaaga	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12514234	A	A	12514234	2	1	9	1	0	0	0	0	0	0	0	1	8978	639	23	1		1	LOH12CR1	12	12514234	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30480	12514234	121337661	12884	21035											
DUSP16	80824	broad.mit.edu	37	chr12	12629837	12629837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactttccccagctcttccCgtgacctgttctctgacatg	6	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12629837	A	A	12629837	3	1	9	1	0	0	0	0	1	0	0	0	4856	652	23	1	73	1	DUSP16	12	12629837	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115603	12629837	121222058	12885	21036											
DUSP16	80824	broad.mit.edu	37	chr12	12630977	12630977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggaaaaaacaaaaaccCgaattttacaactacacttt	5	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12630977	A	A	12630977	1	1	9	0	1	0	0	0	0	0	0	0	4856	667	23	1		1	DUSP16	12	12630977	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1140	12630977	121220918	12886	21037											
DUSP16	80824	broad.mit.edu	37	chr12	12640047	12640047	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgcaggaaatgagactcGgggataaagtcaggctttgg	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12640047	T	T	12640047	2	4	9	1	0	0	0	0	0	0	0	1	4856	1103	39	1		1	DUSP16	12	12640047	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9070	12640047	121211848	12887	21038											
DDX47	51202	broad.mit.edu	37	chr12	12967064	12967064	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatttttctgaattccaaGggtgtgacagatgtgttgtg	11	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12967064	T	T	12967064	5	4	9	1	0	0	0	0	0	0	1	0	4398	1014	35	2	93	2	DDX47	12	12967064	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	327017	12967064	120884831	12888	21039											
DDX47	51202	broad.mit.edu	37	chr12	12975088	12975088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaatttggttcattgccCacttgtttcatgtagaacat	6	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12975088	A	A	12975088	1	1	9	0	1	0	0	0	0	0	0	0	4398	609	21	2		2	DDX47	12	12975088	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8024	12975088	120876807	12889	21040											
GPRC5A	9052	broad.mit.edu	37	chr12	13061795	13061795	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctgtggttccttcacGggctggaagagacatggggc	14	10	2	1	rs147078198		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13061795	T	T	13061795	2	4	9	1	0	0	0	0	0	0	0	1	6790	1103	39	1		1	GPRC5A	12	13061795	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	86707	13061795	120790100	12890	21041											
HEBP1	50865	broad.mit.edu	37	chr12	13140040	13140040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatgcaaggagtggtacGggaatcaagcgccacccatg	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13140040	T	T	13140040	1	4	9	0	1	0	0	0	0	0	0	0	7103	1131	39	1		1	HEBP1	12	13140040	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78245	13140040	120711855	12891	21042											
KIAA1467	57613	broad.mit.edu	37	chr12	13215820	13215820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaaactacttgtccaacGgtaccttggctgccccagtt	7	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13215820	T	T	13215820	3	4	9	1	0	0	0	0	1	0	0	0	8305	1116	39	1	781	1	KIAA1467	12	13215820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75780	13215820	120636075	12892	21043											
GSG1	83445	broad.mit.edu	37	chr12	13243512	13243512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagaaccggtcatcccCagtctcccagttgtattgta	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13243512	A	A	13243512	3	1	9	1	0	0	0	0	1	0	0	0	6886	594	21	2	947	2	GSG1	12	13243512	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27692	13243512	120608383	12893	21044											
GSG1	83445	broad.mit.edu	37	chr12	13243847	13243847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttccctgcactccctcCgctcaagccatactcctcca	3	21	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13243847	A	A	13243847	1	1	9	0	1	0	0	0	0	0	0	0	6886	667	23	1		1	GSG1	12	13243847	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	335	13243847	120608048	12894	21045											
GRIN2B	2904	broad.mit.edu	37	chr12	13717382	13717382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgagatgtcatagacGgatgactcccgtcggatgaa	12	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13717382	T	T	13717382	2	4	9	1	0	0	0	0	0	0	0	1	6846	1103	39	1		1	GRIN2B	12	13717382	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	473535	13717382	120134513	12895	21046											
GRIN2B	2904	broad.mit.edu	37	chr12	14018944	14018944	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggctaccagttccacccGgggtaccacggagagatggt	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14018944	T	T	14018944	2	4	9	1	0	0	0	0	0	0	0	1	6846	1115	39	1		1	GRIN2B	12	14018944	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	301562	14018944	119832951	12896	21047											
ATF7IP	55729	broad.mit.edu	37	chr12	14613502	14613502	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagactccagtgacttcGggttccctcacagcaacgtc	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14613502	T	T	14613502	2	4	9	1	0	0	0	0	0	0	0	1	1091	1103	39	1		1	ATF7IP	12	14613502	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	594558	14613502	119238393	12897	21048											
GUCY2C	2984	broad.mit.edu	37	chr12	14766127	14766127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttttatagctggctaccCgtctgggtttttggcttctt	9	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14766127	A	A	14766127	3	1	9	1	0	0	0	0	1	0	0	0	6961	652	23	1	79	1	GUCY2C	12	14766127	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	152625	14766127	119085768	12898	21049											
GUCY2C	2984	broad.mit.edu	37	chr12	14772155	14772155	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcttacggaggccagtGgattccatcctagaggctgt	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14772155	T	T	14772155	2	4	9	1	0	0	0	0	0	0	0	1	6961	1335	47	2		2	GUCY2C	12	14772155	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6028	14772155	119079740	12899	21050											
GUCY2C	2984	broad.mit.edu	37	chr12	14781689	14781689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctggaagaaaaaaaaacGggcaaattagctaaggggat	11	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14781689	T	T	14781689	1	4	9	0	1	0	0	0	0	0	0	0	6961	1131	39	1		1	GUCY2C	12	14781689	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9534	14781689	119070206	12900	21051											
HIST4H4	121504	broad.mit.edu	37	chr12	14923852	14923852	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagactttgaggactcccCgggtctcctcgtagatgaga	13	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14923852	A	A	14923852	3	1	9	1	0	0	0	0	1	0	0	0	7252	652	23	1	148	1	HIST4H4	12	14923852	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	142163	14923852	118928043	12901	21052											
WBP11	51729	broad.mit.edu	37	chr12	14944192	14944192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggcatatctgcaaacCgtacactcagacctaagggg	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14944192	A	A	14944192	3	1	9	1	0	0	0	0	1	0	0	0	17385	652	23	1	1015	1	WBP11	12	14944192	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20340	14944192	118907703	12902	21053											
WBP11	51729	broad.mit.edu	37	chr12	14946725	14946725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtgcacaaattcatcccCgtcactttctccatctgatt	5	14	4	1	rs150908147		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14946725	A	A	14946725	3	1	9	1	0	0	0	0	1	0	0	0	17385	652	23	1	1092	1	WBP11	12	14946725	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2533	14946725	118905170	12903	21054											
WBP11	51729	broad.mit.edu	37	chr12	14947418	14947418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaacaatatgttaaacaGggccaacataaaaaatgata	8	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14947418	T	T	14947418	1	4	9	0	1	0	0	0	0	0	0	0	17385	1015	35	2		2	WBP11	12	14947418	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	693	14947418	118904477	12904	21055											
WBP11	51729	broad.mit.edu	37	chr12	14947503	14947503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatataacatgtcttcatctCgcctacgagggggaagatct	9	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14947503	A	A	14947503	3	1	9	1	0	0	0	0	1	0	0	0	17385	884	31	3	1260	3	WBP11	12	14947503	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85	14947503	118904392	12905	21056											
C12orf69	440087	broad.mit.edu	37	chr12	14959571	14959571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagacgatttacttcttccCgcctttttgggttctctggg	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14959571	A	A	14959571	3	1	9	1	0	0	0	0	1	0	0	0	1724	652	23	1	637	1	C12orf69	12	14959571	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12068	14959571	118892324	12906	21057											
ART4	420	broad.mit.edu	37	chr12	14993895	14993895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtggtagtcatgttctGgggtagaacttttccttggt	14	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14993895	T	T	14993895	3	4	9	1	0	0	0	0	1	0	0	0	1003	1357	47	2	615	2	ART4	12	14993895	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34324	14993895	118858000	12907	21058											
ERP27	121506	broad.mit.edu	37	chr12	15070170	15070170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgttctcttcatactctGgggaggccttgttcattatc	9	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15070170	T	T	15070170	3	4	9	1	0	0	0	0	1	0	0	0	5283	1348	47	2	315	2	ERP27	12	15070170	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	76275	15070170	118781725	12908	21059											
RERG	85004	broad.mit.edu	37	chr12	15262379	15262379	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttcctcaaaacttcctcGgtcagtaatgtcgtagacca	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15262379	T	T	15262379	2	4	9	1	0	0	0	0	0	0	0	1	13340	1124	39	1		1	RERG	12	15262379	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	192209	15262379	118589516	12909	21060											
PTPRO	5800	broad.mit.edu	37	chr12	15673175	15673175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatggtactacaacttccGggttaccatggtgacgtggg	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15673175	T	T	15673175	3	4	9	1	0	0	0	0	1	0	0	0	12917	1116	39	1	1858	1	PTPRO	12	15673175	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	410796	15673175	118178720	12910	21061											
PTPRO	5800	broad.mit.edu	37	chr12	15704550	15704550	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttagcacacttttaattGgactgttgcttgttaccctc	6	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15704550	T	T	15704550	4	4	9	1	0	0	0	0	0	1	0	0	12917	1349	47	2	2561	2	PTPRO	12	15704550	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31375	15704550	118147345	12911	21062											
PTPRO	5800	broad.mit.edu	37	chr12	15742403	15742403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagtgctggcgtgggacGgacaggaacattcattgccc	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15742403	T	T	15742403	3	4	9	1	0	0	0	0	1	0	0	0	12917	1116	39	1	3523	1	PTPRO	12	15742403	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37853	15742403	118109492	12912	21063											
EPS8	2059	broad.mit.edu	37	chr12	15811501	15811501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaggtggaggttttgccCgcagcgttaaaacaccctct	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15811501	A	A	15811501	3	1	9	1	0	0	0	0	1	0	0	0	5236	652	23	1	1556	1	EPS8	12	15811501	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69098	15811501	118040394	12913	21064											
EPS8	2059	broad.mit.edu	37	chr12	15814977	15814977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacatctctgtcaatgcGggctgccatcatctcaggtg	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15814977	T	T	15814977	3	4	9	1	0	0	0	0	1	0	0	0	5236	1116	39	1	1727	1	EPS8	12	15814977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3476	15814977	118036918	12914	21065											
EPS8	2059	broad.mit.edu	37	chr12	15834229	15834229	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaggtaggtgatgatcCgtagccactgtaataataat	11	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15834229	A	A	15834229	4	1	9	1	0	0	0	0	0	1	0	0	5236	661	23	1	2477	1	EPS8	12	15834229	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19252	15834229	118017666	12915	21066											
STRAP	11171	broad.mit.edu	37	chr12	16042870	16042870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttacttttagcaaagtgtGggatgctgtctcaggagatg	12	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16042870	T	T	16042870	3	4	9	1	0	0	0	0	1	0	0	0	15444	1357	47	2	267	2	STRAP	12	16042870	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	208641	16042870	117809025	12916	21067											
MGST1	4257	broad.mit.edu	37	chr12	16516801	16516801	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtattccttgagtggtccCgacccctctacagccatcct	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16516801	A	A	16516801	2	1	9	1	0	0	0	0	0	0	0	1	9653	639	23	1		1	MGST1	12	16516801	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	473931	16516801	117335094	12917	21068											
PLCZ1	89869	broad.mit.edu	37	chr12	18852764	18852764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcgggcttgtgtctcccCaatagaattattttcattaa	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18852764	A	A	18852764	3	1	9	1	0	0	0	0	1	0	0	0	12139	594	21	2	712	2	PLCZ1	12	18852764	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2335963	18852764	114999131	12918	21069											
PLEKHA5	54477	broad.mit.edu	37	chr12	19406921	19406921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatccagtcacaggacaacCatcacaggacaattgtattt	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19406921	A	A	19406921	3	1	9	1	0	0	0	0	1	0	0	0	12154	594	21	2	289	2	PLEKHA5	12	19406921	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	554157	19406921	114444974	12919	21070											
PLEKHA5	54477	broad.mit.edu	37	chr12	19408154	19408154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtaaacagtatctatacCgttactcataatggacttaa	7	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19408154	A	A	19408154	1	1	9	0	1	0	0	0	0	0	0	0	12154	667	23	1		1	PLEKHA5	12	19408154	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1233	19408154	114443741	12920	21071											
PLEKHA5	54477	broad.mit.edu	37	chr12	19413967	19413967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatagaggtaagtttaccCtactgtcttagtgtattatt	7	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19413967	A	A	19413967	1	1	9	0	1	0	0	0	0	0	0	0	12154	696	24	2		2	PLEKHA5	12	19413967	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5813	19413967	114437928	12921	21072											
PDE3A	5139	broad.mit.edu	37	chr12	20523069	20523069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaccaaggaagatatccCggtgtttaagaggaggaggc	16	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20523069	A	A	20523069	3	1	9	1	0	0	0	0	1	0	0	0	11731	652	23	1	853	1	PDE3A	12	20523069	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1109102	20523069	113328826	12922	21073											
SLCO1C1	53919	broad.mit.edu	37	chr12	20896340	20896340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaatttatggtagacacCgtaagtgtattttgaagact	8	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20896340	A	A	20896340	1	1	9	0	1	0	0	0	0	0	0	0	14839	667	23	1		1	SLCO1C1	12	20896340	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	373271	20896340	112955555	12923	21074											
LST-3TM12	338821	broad.mit.edu	37	chr12	21196297	21196297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggataactcctaaggactctCgttgggttggagcttggtgg	15	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21196297	A	A	21196297	3	1	9	1	0	0	0	0	1	0	0	0	9153	884	31	3	638	3	LST-3TM12	12	21196297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	299957	21196297	112655598	12924	21075											
LST-3TM12	338821	broad.mit.edu	37	chr12	21205114	21205114	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaagtcaatgggaaccCgtctgtggaaacaatggaat	12	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21205114	A	A	21205114	2	1	9	1	0	0	0	0	0	0	0	1	9153	639	23	1		1	LST-3TM12	12	21205114	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8817	21205114	112646781	12925	21076											
SLCO1B1	10599	broad.mit.edu	37	chr12	21392124	21392124	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtgaaacacattgttaaGgggagaaaaaaagccacttc	9	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21392124	T	T	21392124	1	4	9	0	1	0	0	0	0	0	0	0	14837	1015	35	2		2	SLCO1B1	12	21392124	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	187010	21392124	112459771	12926	21077											
SLCO1A2	6579	broad.mit.edu	37	chr12	21422476	21422476	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaaagtaatataataGgacaattacaatttagtttt	5	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21422476	T	T	21422476	1	4	9	0	1	0	0	0	0	0	0	0	14836	1015	35	2		2	SLCO1A2	12	21422476	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	30352	21422476	112429419	12927	21078											
SLCO1A2	6579	broad.mit.edu	37	chr12	21457477	21457477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctactaggacgtacaccCacattaatgatttaacttcc	5	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21457477	A	A	21457477	3	1	9	1	0	0	0	0	1	0	0	0	14836	595	21	2	1579	2	SLCO1A2	12	21457477	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35001	21457477	112394418	12928	21079											
LDHB	3945	broad.mit.edu	37	chr12	21790023	21790023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttaccattgttgacacGggatgaatcctggatagatt	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21790023	T	T	21790023	2	4	9	1	0	0	0	0	0	0	0	1	8773	1103	39	1		1	LDHB	12	21790023	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	332546	21790023	112061872	12929	21080											
KCNJ8	3764	broad.mit.edu	37	chr12	21926525	21926525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccagcacatactcctccGggatgatactctttctggcc	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21926525	T	T	21926525	3	4	9	1	0	0	0	0	1	0	0	0	8126	1116	39	1	1256	1	KCNJ8	12	21926525	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	136502	21926525	111925370	12930	21081											
ABCC9	10060	broad.mit.edu	37	chr12	21981955	21981955	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcaatgttgtttgtatcCgtcagttccagcatacgttg	10	8	1	0	rs143316915		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21981955	A	A	21981955	2	1	9	1	0	0	0	0	0	0	0	1	59	639	23	1		1	ABCC9	12	21981955	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55430	21981955	111869940	12931	21082											
ABCC9	10060	broad.mit.edu	37	chr12	21991021	21991021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttactcacctaaaggccCgaatggtggtgagtccttct	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21991021	A	A	21991021	3	1	9	1	0	0	0	0	1	0	0	0	59	652	23	1	1278	1	ABCC9	12	21991021	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9066	21991021	111860874	12932	21083											
ABCC9	10060	broad.mit.edu	37	chr12	22070022	22070022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaataaaggccattaccCaatacaggaacagggctgaa	9	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22070022	A	A	22070022	3	1	9	1	0	0	0	0	1	0	0	0	59	595	21	2	4509	2	ABCC9	12	22070022	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79001	22070022	111781873	12933	21084											
ABCC9	10060	broad.mit.edu	37	chr12	22078952	22078952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtagtggcaacgaatccCatcacggctggcataaagag	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078952	A	A	22078952	3	1	9	1	0	0	0	0	1	0	0	0	59	594	21	2	4605	2	ABCC9	12	22078952	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8930	22078952	111772943	12934	21085											
ABCC9	10060	broad.mit.edu	37	chr12	22078992	22078992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaggtgccttgattccCgccgcctagaaagagcagta	14	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078992	A	A	22078992	3	1	9	1	0	0	0	0	1	0	0	0	59	652	23	1	4645	1	ABCC9	12	22078992	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	22078992	111772903	12935	21086											
KIAA0528	9847	broad.mit.edu	37	chr12	22666314	22666314	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactaccacttcccattcCtacagaacatcagtacataa	3	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22666314	A	A	22666314	5	1	9	1	0	0	0	0	0	0	1	0	8252	695	24	2	2118	2	KIAA0528	12	22666314	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	587322	22666314	111185581	12936	21087											
KIAA0528	9847	broad.mit.edu	37	chr12	22670927	22670927	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcgccttaccagttttGggtgtcaaactcaaatctgt	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22670927	T	T	22670927	2	4	9	1	0	0	0	0	0	0	0	1	8252	1335	47	2		2	KIAA0528	12	22670927	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4613	22670927	111180968	12937	21088											
SOX5	6660	broad.mit.edu	37	chr12	23687261	23687261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctccattgatgtcctcGgcctgtatctcttctttgat	6	11	3	2	rs138618584		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23687261	T	T	23687261	2	4	9	1	0	0	0	0	0	0	0	1	15068	1103	39	1		1	SOX5	12	23687261	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1016334	23687261	110164634	12938	21089											
SOX5	6660	broad.mit.edu	37	chr12	23818466	23818466	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttgatcaggagggaatacGggaatcattaatggcggcag	15	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23818466	T	T	23818466	2	4	9	1	0	0	0	0	0	0	0	1	15068	1103	39	1		1	SOX5	12	23818466	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131205	23818466	110033429	12939	21090											
SOX5	6660	broad.mit.edu	37	chr12	24048861	24048861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgaaaggctgggagccCgtcactctcctcttcttcca	10	13	4	1	rs144090513		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24048861	A	A	24048861	3	1	9	1	0	0	0	0	1	0	0	0	15068	652	23	1	2221	1	SOX5	12	24048861	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	230395	24048861	109803034	12940	21091											
SOX5	6660	broad.mit.edu	37	chr12	24048932	24048932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatctgcttccccatacGgagaggctggtcgcttggaa	11	13	1	1	rs61756182		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24048932	T	T	24048932	3	4	9	1	0	0	0	0	1	0	0	0	15068	1116	39	1	2292	1	SOX5	12	24048932	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71	24048932	109802963	12941	21092											
BCAT1	586	broad.mit.edu	37	chr12	25054873	25054873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgggtaagcgggaccCggggtaacctacgtgacgct	17	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25054873	A	A	25054873	1	1	9	0	1	0	0	0	0	0	0	0	1359	667	23	1		1	BCAT1	12	25054873	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1005941	25054873	108797022	12942	21093											
BHLHE41	79365	broad.mit.edu	37	chr12	26276669	26276669	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagctttctccagatgtccCagagtctgcagtggtgcaaa	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26276669	A	A	26276669	2	1	9	1	0	0	0	0	0	0	0	1	1430	581	21	2		2	BHLHE41	12	26276669	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1221796	26276669	107575226	12943	21094											
SSPN	8082	broad.mit.edu	37	chr12	26377247	26377247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttagtggcctatcttGgcttgtttatgctttgtgtc	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26377247	T	T	26377247	3	4	9	1	0	0	0	0	1	0	0	0	15306	1348	47	2	307	2	SSPN	12	26377247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	100578	26377247	107474648	12944	21095											
SSPN	8082	broad.mit.edu	37	chr12	26377287	26377287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatatcaggttgacgaacGgacatgtattcaattttcta	7	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26377287	T	T	26377287	3	4	9	1	0	0	0	0	1	0	0	0	15306	1116	39	1	347	1	SSPN	12	26377287	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40	26377287	107474608	12945	21096											
ITPR2	3709	broad.mit.edu	37	chr12	26553144	26553144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggtgacaatgcacataaGgagagtgtcacacgtccttt	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26553144	T	T	26553144	3	4	9	1	0	0	0	0	1	0	0	0	7991	1000	35	2	678	2	ITPR2	12	26553144	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	175857	26553144	107298751	12946	21097											
ITPR2	3709	broad.mit.edu	37	chr12	26568412	26568412	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattcagcaaagtctcttccCtgtacaccaaatcaaaaagc	4	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26568412	G	G	26568412	3	3	9	1	0	0	0	0	1	0	0	0	7991	681	24	4	1003	4	ITPR2	12	26568412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15268	26568412	107283483	12947	21098											
ITPR2	3709	broad.mit.edu	37	chr12	26639109	26639109	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcatgatggcaattgcGggactcattgttacttcctc	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26639109	T	T	26639109	2	4	9	1	0	0	0	0	0	0	0	1	7991	1103	39	1		1	ITPR2	12	26639109	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70697	26639109	107212786	12948	21099											
ITPR2	3709	broad.mit.edu	37	chr12	26755382	26755382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatcgttgatgttgattcCgacactttttattctgcaca	7	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26755382	A	A	26755382	3	1	9	1	0	0	0	0	1	0	0	0	7991	652	23	1	4626	1	ITPR2	12	26755382	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116273	26755382	107096513	12949	21100											
ITPR2	3709	broad.mit.edu	37	chr12	26810648	26810648	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatacttaacctgtaataGgtaagaacttctaagtcagc	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26810648	T	T	26810648	2	4	9	1	0	0	0	0	0	0	0	1	7991	987	35	2		2	ITPR2	12	26810648	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55266	26810648	107041247	12950	21101											
ITPR2	3709	broad.mit.edu	37	chr12	26839489	26839489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaatgtcattgccatgcGggactgaaaccaaagtatac	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26839489	T	T	26839489	3	4	9	1	0	0	0	0	1	0	0	0	7991	1116	39	1	7220	1	ITPR2	12	26839489	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28841	26839489	107012406	12951	21102											
ITPR2	3709	broad.mit.edu	37	chr12	26875361	26875361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttctcagtttccagaacGgatgaatataaaaccaagac	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26875361	T	T	26875361	3	4	9	1	0	0	0	0	1	0	0	0	7991	1116	39	1	7823	1	ITPR2	12	26875361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35872	26875361	106976534	12952	21103											
FGFR1OP2	26127	broad.mit.edu	37	chr12	27110593	27110593	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttataatgagcaagtacCgagaacaaatgtttagattg	8	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27110593	A	A	27110593	2	1	9	1	0	0	0	0	0	0	0	1	5922	644	23	1		1	FGFR1OP2	12	27110593	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	235232	27110593	106741302	12953	21104											
PPFIBP1	8496	broad.mit.edu	37	chr12	27800694	27800694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaccaggtggaggctcaGggagagaagattcgagattt	15	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27800694	T	T	27800694	3	4	9	1	0	0	0	0	1	0	0	0	12409	991	35	2	404	2	PPFIBP1	12	27800694	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	690101	27800694	106051201	12954	21105											
PPFIBP1	8496	broad.mit.edu	37	chr12	27841274	27841274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagaagtggactaaccatcGagtgatggagtggctgcgct	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27841274	T	T	27841274	3	4	9	1	0	0	0	0	1	0	0	0	12409	1058	37	3	2550	3	PPFIBP1	12	27841274	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40580	27841274	106010621	12955	21106											
REP15	387849	broad.mit.edu	37	chr12	27850165	27850165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtctgagtaagaaagacGggctgagagaggtgggcaag	17	4	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27850165	T	T	27850165	3	4	9	1	0	0	0	0	1	0	0	0	13334	1116	39	1	672	1	REP15	12	27850165	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8891	27850165	106001730	12956	21107											
KLHDC5	57542	broad.mit.edu	37	chr12	27933611	27933611	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttcctgcaggtcacgtcCctgctgcagctgctgctgtc	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27933611	T	T	27933611	2	4	9	1	0	0	0	0	0	0	0	1	8430	610	22	4		4	KLHDC5	12	27933611	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	83446	27933611	105918284	12957	21108											
KLHDC5	57542	broad.mit.edu	37	chr12	27944725	27944725	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgttgagtgttacaacccCgagcaggatgcgtggaattt	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27944725	A	A	27944725	2	1	9	1	0	0	0	0	0	0	0	1	8430	639	23	1		1	KLHDC5	12	27944725	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11114	27944725	105907170	12958	21109											
KLHDC5	57542	broad.mit.edu	37	chr12	27950618	27950618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagtggtgttagtggaggcGgtgtcatcacttgtctttct	13	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27950618	T	T	27950618	1	4	9	0	1	0	0	0	0	0	0	0	8430	1131	39	1		1	KLHDC5	12	27950618	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5893	27950618	105901277	12959	21110											
PTHLH	5744	broad.mit.edu	37	chr12	28116415	28116415	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgctccttgcgtttcccGggcttgcctttctttttctt	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28116415	T	T	28116415	2	4	9	1	0	0	0	0	0	0	0	1	12867	1103	39	1		1	PTHLH	12	28116415	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	165797	28116415	105735480	12960	21111											
PTHLH	5744	broad.mit.edu	37	chr12	28122982	28122982	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgggctggttgcttcCggaaagttgattccacacac	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28122982	A	A	28122982	1	1	9	0	1	0	0	0	0	0	0	0	12867	667	23	1		1	PTHLH	12	28122982	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	6567	28122982	105728913	12961	21112											
CCDC91	55297	broad.mit.edu	37	chr12	28410105	28410105	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatgactgtgtgtgtgcGggcttgtttcaatatcttat	10	5	2	1	rs142339420	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28410105	T	T	28410105	1	4	9	0	1	0	0	0	0	0	0	0	2898	1131	39	1		1	CCDC91	12	28410105	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	287123	28410105	105441790	12962	21113											
FAR2	55711	broad.mit.edu	37	chr12	29460735	29460735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgccatcataaggccctcCattgtgggagcaacttggca	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29460735	A	A	29460735	2	1	9	1	0	0	0	0	0	0	0	1	5732	581	21	2		2	FAR2	12	29460735	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1050630	29460735	104391160	12963	21114											
FAR2	55711	broad.mit.edu	37	chr12	29462118	29462118	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaatcttctttcttttaGggttgggttgataatataaa	8	3	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29462118	T	T	29462118	5	4	9	1	0	0	0	0	0	0	1	0	5732	1014	35	2	741	2	FAR2	12	29462118	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	1383	29462118	104389777	12964	21115											
FAR2	55711	broad.mit.edu	37	chr12	29463980	29463980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgggaaagggtttcttcGggccataaaagctactccaa	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29463980	T	T	29463980	3	4	9	1	0	0	0	0	1	0	0	0	5732	1116	39	1	810	1	FAR2	12	29463980	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1862	29463980	104387915	12965	21116											
OVCH1	341350	broad.mit.edu	37	chr12	29597105	29597105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttctgtgagaatttcttGggatctgcatgatcccttct	9	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29597105	T	T	29597105	3	4	9	1	0	0	0	0	1	0	0	0	11417	1348	47	2	434	2	OVCH1	12	29597105	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	133125	29597105	104254790	12966	21117											
OVCH1	341350	broad.mit.edu	37	chr12	29630370	29630370	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccatggcctcactggtctCtgccagcaatggtgaaggca	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29630370	A	A	29630370	4	1	9	1	0	0	0	0	0	1	0	0	11417	922	32	3	2326	3	OVCH1	12	29630370	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33265	29630370	104221525	12967	21118											
TMTC1	83857	broad.mit.edu	37	chr12	29689195	29689195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctgcaaactctggacCatatttgatggaatccttca	7	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29689195	A	A	29689195	3	1	9	1	0	0	0	0	1	0	0	0	16383	594	21	2	948	2	TMTC1	12	29689195	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58825	29689195	104162700	12968	21119											
TMTC1	83857	broad.mit.edu	37	chr12	29689244	29689244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcttcttcctttttctcCtgggacctatagataataat	5	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29689244	A	A	29689244	3	1	9	1	0	0	0	0	1	0	0	0	16383	680	24	2	997	2	TMTC1	12	29689244	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	29689244	104162651	12969	21120											
TMTC1	83857	broad.mit.edu	37	chr12	29911698	29911698	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacacgtccgctctgccaaCgatcccagccaccttggaag	8	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29911698	T	T	29911698	3	4	9	1	0	0	0	0	1	0	0	0	16383	536	19	4	2219	4	TMTC1	12	29911698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	222454	29911698	103940197	12970	21121											
IPO8	10526	broad.mit.edu	37	chr12	30833616	30833616	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagtaatttttcccaccCaaagaaccatcaacaataaa	3	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30833616	A	A	30833616	1	1	9	0	1	0	0	0	0	0	0	0	7868	609	21	2		2	IPO8	12	30833616	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	921918	30833616	103018279	12971	21122											
CAPRIN2	65981	broad.mit.edu	37	chr12	30863318	30863318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccacaggggtcatgctacGggagtctccttgtccagagt	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30863318	T	T	30863318	3	4	9	1	0	0	0	0	1	0	0	0	2662	1116	39	1	485	1	CAPRIN2	12	30863318	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29702	30863318	102988577	12972	21123											
TSPAN11	441631	broad.mit.edu	37	chr12	31107042	31107042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacacacatcctcttcccCgagcactgaatgagtcaagc	7	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31107042	A	A	31107042	1	1	9	0	1	0	0	0	0	0	0	0	16760	667	23	1		1	TSPAN11	12	31107042	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	243724	31107042	102744853	12973	21124											
TSPAN11	441631	broad.mit.edu	37	chr12	31131540	31131540	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggttgagctggtggcGggagtcctggcccatgtgta	16	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31131540	T	T	31131540	2	4	9	1	0	0	0	0	0	0	0	1	16760	1103	39	1		1	TSPAN11	12	31131540	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24498	31131540	102720355	12974	21125											
TSPAN11	441631	broad.mit.edu	37	chr12	31135553	31135553	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagggccgccaggtgccCgacagctgctgcaagacagt	15	14	0	1	rs147404716	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31135553	A	A	31135553	2	1	9	1	0	0	0	0	0	0	0	1	16760	639	23	1		1	TSPAN11	12	31135553	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4013	31135553	102716342	12975	21126											
DENND5B	160518	broad.mit.edu	37	chr12	31576398	31576398	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agttagtaagtaatattgctCcttctactttatcccattat	4	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31576398	G	G	31576398	1	3	9	0	1	0	0	0	0	0	0	0	4477	870	30	4		4	DENND5B	12	31576398	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	440845	31576398	102275497	12976	21127											
DENND5B	160518	broad.mit.edu	37	chr12	31605333	31605333	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagttcttggataaaatcCactttattggggaactgtgg	12	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31605333	A	A	31605333	2	1	9	1	0	0	0	0	0	0	0	1	4477	581	21	2		2	DENND5B	12	31605333	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28935	31605333	102246562	12977	21128											
C12orf72	254013	broad.mit.edu	37	chr12	31814875	31814875	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgacagaacctgtgtttGgggaaaggactgatggcttt	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31814875	T	T	31814875	1	4	9	0	1	0	0	0	0	0	0	0	1726	1363	47	2		2	C12orf72	12	31814875	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	209542	31814875	102037020	12978	21129											
H3F3C	440093	broad.mit.edu	37	chr12	31944709	31944709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttaagctctctctcccCgtatccggcgagccaactgg	8	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31944709	A	A	31944709	3	1	9	1	0	0	0	0	1	0	0	0	7001	652	23	1	19	1	H3F3C	12	31944709	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129834	31944709	101907186	12979	21130											
C12orf35	55196	broad.mit.edu	37	chr12	32134130	32134130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttctgatatgcataatGggacagttgtggcctcacac	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32134130	T	T	32134130	3	4	9	1	0	0	0	0	1	0	0	0	1695	1348	47	2	243	2	C12orf35	12	32134130	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	189421	32134130	101717765	12980	21131											
C12orf35	55196	broad.mit.edu	37	chr12	32137414	32137414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatccactgctgtgcattGggctggctctccatggttta	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32137414	T	T	32137414	3	4	9	1	0	0	0	0	1	0	0	0	1695	1339	47	2	3527	2	C12orf35	12	32137414	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3284	32137414	101714481	12981	21132											
C12orf35	55196	broad.mit.edu	37	chr12	32137853	32137853	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagcttctcaggaaaccCgacagaagaaacatgtaaca	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32137853	A	A	32137853	2	1	9	1	0	0	0	0	0	0	0	1	1695	644	23	1		1	C12orf35	12	32137853	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	439	32137853	101714042	12982	21133											
C12orf35	55196	broad.mit.edu	37	chr12	32145286	32145286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctaacattgagaaataaaGtaagtaaagtttttatttcc	6	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32145286	T	T	32145286	1	4	9	0	1	0	0	0	0	0	0	0	1695	1044	36	3		3	C12orf35	12	32145286	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7433	32145286	101706609	12983	21134											
BICD1	636	broad.mit.edu	37	chr12	32490723	32490723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacagacacccaacattcGggtcagcagtggcactcaga	9	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32490723	T	T	32490723	3	4	9	1	0	0	0	0	1	0	0	0	1434	1116	39	1	2569	1	BICD1	12	32490723	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	345437	32490723	101361172	12984	21135											
FGD4	121512	broad.mit.edu	37	chr12	32793114	32793114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccgtttaagtctgtttGggacagtggtaggaagagag	14	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32793114	T	T	32793114	1	4	9	0	1	0	0	0	0	0	0	0	5892	1363	47	2		2	FGD4	12	32793114	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	302391	32793114	101058781	12985	21136											
DNM1L	10059	broad.mit.edu	37	chr12	32884016	32884016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccttagaatctgttgatcCacttggtggccttaacacta	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32884016	A	A	32884016	3	1	9	1	0	0	0	0	1	0	0	0	4711	594	21	2	1186	2	DNM1L	12	32884016	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90902	32884016	100967879	12986	21137											
YARS2	51067	broad.mit.edu	37	chr12	32908564	32908564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaagcgagtctgccgtgGggtcgaagccacagtaaatg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32908564	T	T	32908564	3	4	9	1	0	0	0	0	1	0	0	0	17595	1232	43	2	1208	2	YARS2	12	32908564	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24548	32908564	100943331	12987	21138											
PKP2	5318	broad.mit.edu	37	chr12	32955364	32955364	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgcagagaaagattccGggacagattcctcagcagcg	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32955364	T	T	32955364	2	4	9	1	0	0	0	0	0	0	0	1	12080	1115	39	1		1	PKP2	12	32955364	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46800	32955364	100896531	12988	21139											
PKP2	5318	broad.mit.edu	37	chr12	32994066	32994066	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggatgatgatattctcCgtcagcgtaagcaatgcttc	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32994066	A	A	32994066	2	1	9	1	0	0	0	0	0	0	0	1	12080	639	23	1		1	PKP2	12	32994066	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38702	32994066	100857829	12989	21140											
SYT10	341359	broad.mit.edu	37	chr12	33579074	33579074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttaatctttccttaccGggttgatgacgtaggctcag	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33579074	T	T	33579074	3	4	9	1	0	0	0	0	1	0	0	0	15585	1130	39	1	1087	1	SYT10	12	33579074	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	585008	33579074	100272821	12990	21141											
ALG10	84920	broad.mit.edu	37	chr12	34175697	34175697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgagggccatttctccCtttcccaggtggggtcccca	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34175697	A	A	34175697	3	1	9	1	0	0	0	0	1	0	0	0	511	681	24	2	165	2	ALG10	12	34175697	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	596623	34175697	99676198	12991	21142											
ALG10	84920	broad.mit.edu	37	chr12	34176935	34176935	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattacctggcttgtacctGgtgtcaattggagtgatcaa	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34176935	T	T	34176935	2	4	9	1	0	0	0	0	0	0	0	1	511	1335	47	2		2	ALG10	12	34176935	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1238	34176935	99674960	12992	21143											
ALG10	84920	broad.mit.edu	37	chr12	34179142	34179142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattcttcagtttcttttGgcttattccatgtcctttaa	4	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34179142	T	T	34179142	3	4	9	1	0	0	0	0	1	0	0	0	511	1339	47	2	724	2	ALG10	12	34179142	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2207	34179142	99672753	12993	21144											
ALG10	84920	broad.mit.edu	37	chr12	34179208	34179208	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttggccctacatccttctGggatttctgttttgtgcttt	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34179208	T	T	34179208	2	4	9	1	0	0	0	0	0	0	0	1	511	1335	47	2		2	ALG10	12	34179208	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66	34179208	99672687	12994	21145											
ALG10B	144245	broad.mit.edu	37	chr12	38712064	38712064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttctttcattttaaagtGggatcccatgattactacat	5	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38712064	T	T	38712064	3	4	9	1	0	0	0	0	1	0	0	0	512	1362	47	2	179	2	ALG10B	12	38712064	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4532856	38712064	95139831	12995	21146											
ALG10B	144245	broad.mit.edu	37	chr12	38712167	38712167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaacatgttgtctgctcCattgggatgctcagatttgt	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38712167	A	A	38712167	2	1	9	1	0	0	0	0	0	0	0	1	512	581	21	2		2	ALG10B	12	38712167	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	38712167	95139728	12996	21147											
ALG10B	144245	broad.mit.edu	37	chr12	38714038	38714038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttatttttttaacttcCtttattatacagaagcagga	4	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38714038	A	A	38714038	3	1	9	1	0	0	0	0	1	0	0	0	512	681	24	2	455	2	ALG10B	12	38714038	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1871	38714038	95137857	12997	21148											
CPNE8	144402	broad.mit.edu	37	chr12	39118746	39118746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtgttaggttttatacCgaagttttatattgaatttt	7	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39118746	A	A	39118746	1	1	9	0	1	0	0	0	0	0	0	0	3850	667	23	1		1	CPNE8	12	39118746	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	404708	39118746	94733149	12998	21149											
CPNE8	144402	broad.mit.edu	37	chr12	39223207	39223207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttttccaggcgacttccCtgtgaaccaacgatctctcc	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39223207	A	A	39223207	3	1	9	1	0	0	0	0	1	0	0	0	3850	680	24	2	1373	2	CPNE8	12	39223207	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104461	39223207	94628688	12999	21150											
KIF21A	55605	broad.mit.edu	37	chr12	39695356	39695356	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgacccttcatctctccCactggcataaaagtatccat	4	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39695356	A	A	39695356	2	1	9	1	0	0	0	0	0	0	0	1	8358	581	21	2		2	KIF21A	12	39695356	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	472149	39695356	94156539	13000	21151											
KIF21A	55605	broad.mit.edu	37	chr12	39757013	39757013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttattacattgccaagtgcCaactaaaagaaagagaaaga	7	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39757013	A	A	39757013	3	1	9	1	0	0	0	0	1	0	0	0	8358	593	21	2	4246	2	KIF21A	12	39757013	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61657	39757013	94094882	13001	21152											
LRRK2	120892	broad.mit.edu	37	chr12	40646803	40646803	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcgaatgcattgtcaactCtcttagaacaaaatggtaag	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40646803	A	A	40646803	3	1	9	1	0	0	0	0	1	0	0	0	9120	913	32	3	1315	3	LRRK2	12	40646803	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	889790	40646803	93205092	13002	21153											
LRRK2	120892	broad.mit.edu	37	chr12	40702473	40702473	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacaaaagaaagagagatctCgtcctaaatgtgtgggattt	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702473	A	A	40702473	2	1	9	1	0	0	0	0	0	0	0	1	9120	871	31	3		3	LRRK2	12	40702473	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55670	40702473	93149422	13003	21154											
LRRK2	120892	broad.mit.edu	37	chr12	40713831	40713831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgtccaaaacaccctaaGggcattatttcgcgtagaga	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40713831	T	T	40713831	3	4	9	1	0	0	0	0	1	0	0	0	9120	991	35	2	5003	2	LRRK2	12	40713831	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11358	40713831	93138064	13004	21155											
LRRK2	120892	broad.mit.edu	37	chr12	40715100	40715100	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtaatatgccattttctCagagtttacttgtttggaag	8	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40715100	A	A	40715100	1	1	9	0	1	0	0	0	0	0	0	0	9120	841	29	3		3	LRRK2	12	40715100	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1269	40715100	93136795	13005	21156											
LRRK2	120892	broad.mit.edu	37	chr12	40749871	40749871	+	Intron	DEL	A	-	-													acattaaggccattttagtcAacatacatgttctttttgta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40749871	-	-	40749871	6	5	9	0	1	1	0	1	0	0	0	0	9120	145	5	0		0	LRRK2	12	40749871	Intron	DEL	A	TCGA-05-4396-01A-21D-1855-08	34771	40749871	93102024	13006	21157											
LRRK2	120892	broad.mit.edu	37	chr12	40753148	40753148	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaatccacaaattcaacGgaaagaaatgtaatgtgggg	11	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40753148	T	T	40753148	2	4	9	1	0	0	0	0	0	0	0	1	9120	1103	39	1		1	LRRK2	12	40753148	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3277	40753148	93098747	13007	21158											
CNTN1	1272	broad.mit.edu	37	chr12	41316191	41316191	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttagcatctaataactacGggatggtcagaagcactgaa	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41316191	C	C	41316191	3	2	9	1	0	0	0	0	1	0	0	0	3672	1116	39	4	375	4	CNTN1	12	41316191	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	563043	41316191	92535704	13008	21159											
CNTN1	1272	broad.mit.edu	37	chr12	41327262	41327262	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtttctcttaatattaGgaacaacaaaaccatatcct	4	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41327262	T	T	41327262	5	4	9	1	0	0	0	0	0	0	1	0	3672	1014	35	2	729	2	CNTN1	12	41327262	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	11071	41327262	92524633	13009	21160											
CNTN1	1272	broad.mit.edu	37	chr12	41419072	41419072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtattttatagaagtcGgggcctgcaatagtgcaggg	13	8	0	1	rs138121813		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41419072	T	T	41419072	3	4	9	1	0	0	0	0	1	0	0	0	3672	1116	39	1	2722	1	CNTN1	12	41419072	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91810	41419072	92432823	13010	21161											
PDZRN4	29951	broad.mit.edu	37	chr12	41946515	41946515	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctgacagtctgttacCgaacagatgatgaagaagac	12	8	1	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41946515	A	A	41946515	2	1	9	1	0	0	0	0	0	0	0	1	11804	644	23	1		1	PDZRN4	12	41946515	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	527443	41946515	91905380	13011	21162											
PDZRN4	29951	broad.mit.edu	37	chr12	41966827	41966827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagctgcagaagtactcCgctcactgtagaccgttccc	10	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41966827	A	A	41966827	3	1	9	1	0	0	0	0	1	0	0	0	11804	652	23	1	2357	1	PDZRN4	12	41966827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20312	41966827	91885068	13012	21163											
GXYLT1	283464	broad.mit.edu	37	chr12	42481725	42481725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaggttttaataaggaacGgatgttgtcatcttcaaaag	9	4	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42481725	T	T	42481725	3	4	9	1	0	0	0	0	1	0	0	0	6968	1116	39	1	140	1	GXYLT1	12	42481725	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	514898	42481725	91370170	13013	21164											
PRICKLE1	144165	broad.mit.edu	37	chr12	42853542	42853542	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttcacaactttcctacGgaagaaaaggaaacgattca	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42853542	T	T	42853542	1	4	9	0	1	0	0	0	0	0	0	0	12592	1131	39	1		1	PRICKLE1	12	42853542	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	371817	42853542	90998353	13014	21165											
PRICKLE1	144165	broad.mit.edu	37	chr12	42854155	42854155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgagtcctttcactcatcGgaggctgccggatttcaatg	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42854155	T	T	42854155	3	4	9	1	0	0	0	0	1	0	0	0	12592	1116	39	1	547	1	PRICKLE1	12	42854155	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	613	42854155	90997740	13015	21166											
ADAMTS20	80070	broad.mit.edu	37	chr12	43826172	43826172	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattctctctcgtcactcGggacagttcttggcattcat	8	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43826172	T	T	43826172	2	4	9	1	0	0	0	0	0	0	0	1	266	1124	39	1		1	ADAMTS20	12	43826172	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	972017	43826172	90025723	13016	21167											
ADAMTS20	80070	broad.mit.edu	37	chr12	43837735	43837735	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacaaaaagcagatggccCagaggttattactgctgaat	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43837735	A	A	43837735	1	1	9	0	1	0	0	0	0	0	0	0	266	609	21	2		2	ADAMTS20	12	43837735	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11563	43837735	90014160	13017	21168											
ADAMTS20	80070	broad.mit.edu	37	chr12	43925974	43925974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttctaagaaatattcacCgttctgtcctttaaatgttc	6	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43925974	A	A	43925974	3	1	9	1	0	0	0	0	1	0	0	0	266	652	23	1	5401	1	ADAMTS20	12	43925974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88239	43925974	89925921	13018	21169											
PUS7L	83448	broad.mit.edu	37	chr12	44142333	44142333	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctgcataactaaaatcCgaaggaataacaccaagttt	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44142333	A	A	44142333	2	1	9	1	0	0	0	0	0	0	0	1	12942	639	23	1		1	PUS7L	12	44142333	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	216359	44142333	89709562	13019	21170											
PUS7L	83448	broad.mit.edu	37	chr12	44148207	44148207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtttgtgtgctttttccCgaaatcttactgttaccacc	6	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44148207	A	A	44148207	3	1	9	1	0	0	0	0	1	0	0	0	12942	652	23	1	1295	1	PUS7L	12	44148207	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5874	44148207	89703688	13020	21171											
PUS7L	83448	broad.mit.edu	37	chr12	44148234	44148234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactgttaccaccacattcGgattaccagcactgcaattc	5	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44148234	T	T	44148234	3	4	9	1	0	0	0	0	1	0	0	0	12942	1116	39	1	1322	1	PUS7L	12	44148234	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	44148234	89703661	13021	21172											
IRAK4	51135	broad.mit.edu	37	chr12	44176169	44176169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgactttggccttgcacGggcttctgagaagtttgccc	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44176169	T	T	44176169	3	4	9	1	0	0	0	0	1	0	0	0	7895	1116	39	1	1031	1	IRAK4	12	44176169	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27935	44176169	89675726	13022	21173											
TWF1	5756	broad.mit.edu	37	chr12	44189499	44189499	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgtgtgcatgctgcttGggatgtacttcttcataaag	11	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44189499	T	T	44189499	2	4	9	1	0	0	0	0	0	0	0	1	16907	1335	47	2		2	TWF1	12	44189499	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13330	44189499	89662396	13023	21174											
TWF1	5756	broad.mit.edu	37	chr12	44190829	44190829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacaatttctagcagacGgctcttgcagctagaataca	7	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44190829	T	T	44190829	3	4	9	1	0	0	0	0	1	0	0	0	16907	1116	39	1	228	1	TWF1	12	44190829	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1330	44190829	89661066	13024	21175											
TMEM117	84216	broad.mit.edu	37	chr12	44693440	44693441	+	Missense_Mutation	DNP	GG	TT	TT													cagctgggacaagctgaatcGgggatttttgcccagtgatg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44693441	TT	TT	44693440	3	4	9	1	0	0	0	0	1	0	0	0	16154	1116	39	1	704	1	TMEM117	12	44693440	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	502611	44693440	89158455	13025	21176											
TMEM117	84216	broad.mit.edu	37	chr12	44782354	44782354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcgtctacaagtcttccCacctaacctcggaaaacttg	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44782354	A	A	44782354	3	1	9	1	0	0	0	0	1	0	0	0	16154	594	21	2	1470	2	TMEM117	12	44782354	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88914	44782354	89069541	13026	21177											
PLEKHA9	51054	broad.mit.edu	37	chr12	45567940	45567940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgtggtgatcctggtGgagtgtggtagagcagctca	16	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45567940	T	T	45567940	3	4	9	1	0	0	0	0	1	0	0	0	12158	1348	47	2	970	2	PLEKHA9	12	45567940	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	785586	45567940	88283955	13027	21178											
ANO6	196527	broad.mit.edu	37	chr12	45610211	45610211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtccccacccgagagccCgagccgacgcgggaagaagt	14	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45610211	A	A	45610211	1	1	9	0	1	0	0	0	0	0	0	0	701	667	23	1		1	ANO6	12	45610211	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42271	45610211	88241684	13028	21179											
ANO6	196527	broad.mit.edu	37	chr12	45782033	45782033	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcaggaagaacaagccCgaccagaatacgaagcacga	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45782033	A	A	45782033	2	1	9	1	0	0	0	0	0	0	0	1	701	644	23	1		1	ANO6	12	45782033	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	171822	45782033	88069862	13029	21180											
ANO6	196527	broad.mit.edu	37	chr12	45784220	45784220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaagaagaacgcattcCctttactgcctggggaaaat	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45784220	A	A	45784220	3	1	9	1	0	0	0	0	1	0	0	0	701	623	22	2	1391	2	ANO6	12	45784220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2187	45784220	88067675	13030	21181											
ANO6	196527	broad.mit.edu	37	chr12	45784247	45784247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggggaaaatgtatacGgataaccctctgtgccagtg	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45784247	T	T	45784247	3	4	9	1	0	0	0	0	1	0	0	0	701	1116	39	1	1418	1	ANO6	12	45784247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	45784247	88067648	13031	21182											
ANO6	196527	broad.mit.edu	37	chr12	45797234	45797234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctagtgtgacccaggtGgctgtcttcttgaactgaca	10	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45797234	T	T	45797234	3	4	9	1	0	0	0	0	1	0	0	0	701	1348	47	2	1873	2	ANO6	12	45797234	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12987	45797234	88054661	13032	21183											
ARID2	196528	broad.mit.edu	37	chr12	46205235	46205235	+	Frame_Shift_Del	DEL	G	-	-													acgagaaagttcatcattttGgggaggatgatgatgaggta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46205235	-	-	46205235	7	5	9	1	0	1	0	1	0	0	0	0	917	1348	47	0	333	0	ARID2	12	46205235	Frame_Shift_Del	DEL	G	TCGA-05-4396-01A-21D-1855-08	408001	46205235	87646660	13033	21184											
ARID2	196528	broad.mit.edu	37	chr12	46230610	46230610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattgaaggacagcgggtaCttcagattgcagtgattttg	12	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46230610	A	A	46230610	3	1	9	1	0	0	0	0	1	0	0	0	917	565	20	3	889	3	ARID2	12	46230610	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25375	46230610	87621285	13034	21185											
SFRS2IP	9169	broad.mit.edu	37	chr12	46316732	46316732	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacttgccttgtctgtcttcGagctatctgcgctggcttcc	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46316732	T	T	46316732	4	4	9	1	0	0	0	0	0	1	0	0	14290	1059	37	3	291	3	SFRS2IP	12	46316732	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86122	46316732	87535163	13035	21186											
SFRS2IP	9169	broad.mit.edu	37	chr12	46316867	46316867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccattcccgtatttcctGgggctgctgtcggagcaggc	13	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46316867	T	T	46316867	3	4	9	1	0	0	0	0	1	0	0	0	14290	1348	47	2	426	2	SFRS2IP	12	46316867	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	135	46316867	87535028	13036	21187											
SFRS2IP	9169	broad.mit.edu	37	chr12	46320383	46320383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctggatttctggttcttGgatcaggcccagagtttatt	10	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46320383	T	T	46320383	3	4	9	1	0	0	0	0	1	0	0	0	14290	1348	47	2	1310	2	SFRS2IP	12	46320383	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3516	46320383	87531512	13037	21188											
SFRS2IP	9169	broad.mit.edu	37	chr12	46320560	46320560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttcctcgtggacatctcCaaccatcatttgcccatctt	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46320560	A	A	46320560	3	1	9	1	0	0	0	0	1	0	0	0	14290	595	21	2	1487	2	SFRS2IP	12	46320560	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	177	46320560	87531335	13038	21189											
SFRS2IP	9169	broad.mit.edu	37	chr12	46321082	46321082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgtctttgttgggtgacCaagttgtagatggagaatga	15	3	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46321082	A	A	46321082	3	1	9	1	0	0	0	0	1	0	0	0	14290	595	21	2	2009	2	SFRS2IP	12	46321082	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	522	46321082	87530813	13039	21190											
SFRS2IP	9169	broad.mit.edu	37	chr12	46321195	46321195	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtttcaaccttttcatcCgcaagatcagaagacggcat	7	11	3	3	rs149452001	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46321195	A	A	46321195	2	1	9	1	0	0	0	0	0	0	0	1	14290	639	23	1		1	SFRS2IP	12	46321195	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113	46321195	87530700	13040	21191											
SFRS2IP	9169	broad.mit.edu	37	chr12	46321327	46321327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaaatgaatcacactcCataggtatcatttcattgtt	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46321327	A	A	46321327	3	1	9	1	0	0	0	0	1	0	0	0	14290	594	21	2	2254	2	SFRS2IP	12	46321327	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	132	46321327	87530568	13041	21192											
SLC38A2	54407	broad.mit.edu	37	chr12	46758304	46758304	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaattatcaaagcagcttcCacaggacacggaacctgaaa	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46758304	G	G	46758304	2	3	9	1	0	0	0	0	0	0	0	1	14718	581	21	4		4	SLC38A2	12	46758304	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	436977	46758304	87093591	13042	21193											
SLC38A4	55089	broad.mit.edu	37	chr12	47170763	47170763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatggaaatatttgacacCgtttgcatttttctccggga	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47170763	A	A	47170763	2	1	9	1	0	0	0	0	0	0	0	1	14720	639	23	1		1	SLC38A4	12	47170763	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	412459	47170763	86681132	13043	21194											
AMIGO2	347902	broad.mit.edu	37	chr12	47471879	47471879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaccatcagtctttcccCgacctgagcctcatgaataa	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47471879	A	A	47471879	3	1	9	1	0	0	0	0	1	0	0	0	576	652	23	1	665	1	AMIGO2	12	47471879	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	301116	47471879	86380016	13044	21195											
FAM113B	91523	broad.mit.edu	37	chr12	47629830	47629830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccattctccatcaccaGggaatgccccggttcccaca	6	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47629830	T	T	47629830	3	4	9	1	0	0	0	0	1	0	0	0	5448	991	35	2	986	2	FAM113B	12	47629830	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	157951	47629830	86222065	13045	21196											
RPAP3	79657	broad.mit.edu	37	chr12	48084337	48084337	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taatttttgcaaagcaaatcGagcagcacctcgtctggaat	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48084337	T	T	48084337	2	4	9	1	0	0	0	0	0	0	0	1	13654	1066	37	3		3	RPAP3	12	48084337	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	454507	48084337	85767558	13046	21197											
ENDOU	8909	broad.mit.edu	37	chr12	48110712	48110712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtttctggtctctgacGgggagatgcagttttggcta	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48110712	T	T	48110712	3	4	9	1	0	0	0	0	1	0	0	0	5158	1116	39	1	744	1	ENDOU	12	48110712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26375	48110712	85741183	13047	21198											
SLC48A1	55652	broad.mit.edu	37	chr12	48174024	48174024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctatgcccaccgctaccGggctgactttgctgacatca	8	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48174024	T	T	48174024	3	4	9	1	0	0	0	0	1	0	0	0	14763	1116	39	1	411	1	SLC48A1	12	48174024	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63312	48174024	85677871	13048	21199											
HDAC7	51564	broad.mit.edu	37	chr12	48183607	48183607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acctcctacctttagctcacGagaagccactttgaaggcga	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48183607	T	T	48183607	3	4	9	1	0	0	0	0	1	0	0	0	7079	1058	37	3	935	3	HDAC7	12	48183607	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9583	48183607	85668288	13049	21200											
HDAC7	51564	broad.mit.edu	37	chr12	48191965	48191965	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttttcagaatcacctcCgctagcttctgcttgaccac	6	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48191965	A	A	48191965	2	1	9	1	0	0	0	0	0	0	0	1	7079	639	23	1		1	HDAC7	12	48191965	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8358	48191965	85659930	13050	21201											
TMEM106C	79022	broad.mit.edu	37	chr12	48359692	48359692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggttttcttcctgtttcCgcattcagtccttgtggatg	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48359692	A	A	48359692	3	1	9	1	0	0	0	0	1	0	0	0	16145	652	23	1	333	1	TMEM106C	12	48359692	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	167727	48359692	85492203	13051	21202											
COL2A1	1280	broad.mit.edu	37	chr12	48391582	48391582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaagaggtgaccaggccCttaaacacatggtggggcct	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48391582	A	A	48391582	1	1	9	0	1	0	0	0	0	0	0	0	3719	696	24	2		2	COL2A1	12	48391582	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31890	48391582	85460313	13052	21203											
COL2A1	1280	broad.mit.edu	37	chr12	48391929	48391929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcagcagctgcaataccGggtgagaataatttgcactt	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48391929	T	T	48391929	1	4	9	0	1	0	0	0	0	0	0	0	3719	1131	39	1		1	COL2A1	12	48391929	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	347	48391929	85459966	13053	21204											
COL2A1	1280	broad.mit.edu	37	chr12	48392015	48392015	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacattcacaggattaagcCgagtaagcccactaagcccc	7	13	1	0	rs113106515	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48392015	A	A	48392015	1	1	9	0	1	0	0	0	0	0	0	0	3719	667	23	1		1	COL2A1	12	48392015	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	48392015	85459880	13054	21205											
SENP1	29843	broad.mit.edu	37	chr12	48477524	48477524	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgatggtttgactttccCgcaaaactgtttgataatcc	8	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48477524	A	A	48477524	2	1	9	1	0	0	0	0	0	0	0	1	14159	639	23	1		1	SENP1	12	48477524	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85509	48477524	85374371	13055	21206											
PFKM	5213	broad.mit.edu	37	chr12	48524199	48524199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtatcttcaccggtgccCgtgtcttctttgtccatgag	10	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48524199	A	A	48524199	3	1	9	1	0	0	0	0	1	0	0	0	11860	652	23	1	366	1	PFKM	12	48524199	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46675	48524199	85327696	13056	21207											
PFKM	5213	broad.mit.edu	37	chr12	48536608	48536608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagctggcaccaagcgtcGggtgtttatcattgagacta	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48536608	T	T	48536608	3	4	9	1	0	0	0	0	1	0	0	0	11860	1116	39	1	1984	1	PFKM	12	48536608	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12409	48536608	85315287	13057	21208											
ANP32D	23519	broad.mit.edu	37	chr12	48866498	48866498	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggaacaggacgccctcCgatgtgaaagaacttttcct	10	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48866498	A	A	48866498	2	1	9	1	0	0	0	0	0	0	0	1	708	639	23	1		1	ANP32D	12	48866498	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	329890	48866498	84985397	13058	21209											
OR8S1	341568	broad.mit.edu	37	chr12	48919460	48919460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccgagttcctcctccttGggctgtctgccgaccccaac	8	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48919460	T	T	48919460	3	4	9	1	0	0	0	0	1	0	0	0	11340	1348	47	2	48	2	OR8S1	12	48919460	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52962	48919460	84932435	13059	21210											
OR8S1	341568	broad.mit.edu	37	chr12	48921775	48921775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagagaccagccttcacCgaaggccgcagggagcccgg	15	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48921775	A	A	48921775	2	1	9	1	0	0	0	0	0	0	0	1	11340	639	23	1		1	OR8S1	12	48921775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2315	48921775	84930120	13060	21211											
CCNT1	904	broad.mit.edu	37	chr12	49087776	49087776	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattggcttccatgttctcCagttgcctcttctgggcagc	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49087776	A	A	49087776	2	1	9	1	0	0	0	0	0	0	0	1	2964	581	21	2		2	CCNT1	12	49087776	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	166001	49087776	84764119	13061	21212											
CCNT1	904	broad.mit.edu	37	chr12	49087820	49087820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctgcatgcttcgcgcGgtattctttcagtgacactt	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49087820	T	T	49087820	3	4	9	1	0	0	0	0	1	0	0	0	2964	1116	39	1	1007	1	CCNT1	12	49087820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	49087820	84764075	13062	21213											
CCNT1	904	broad.mit.edu	37	chr12	49087857	49087857	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actttagctgatggcacactCttactattctgcttctggga	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49087857	A	A	49087857	3	1	9	1	0	0	0	0	1	0	0	0	2964	912	32	3	1044	3	CCNT1	12	49087857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	49087857	84764038	13063	21214											
CCNT1	904	broad.mit.edu	37	chr12	49089836	49089836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactcccaccagtgcttccCgtcagttgagactgggatct	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49089836	A	A	49089836	3	1	9	1	0	0	0	0	1	0	0	0	2964	652	23	1	1540	1	CCNT1	12	49089836	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1979	49089836	84762059	13064	21215											
CCNT1	904	broad.mit.edu	37	chr12	49093591	49093591	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagtgcactttactacatGagtatgtgggtgatcaattg	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49093591	T	T	49093591	3	4	9	1	0	0	0	0	1	0	0	0	2964	1290	45	3	1734	3	CCNT1	12	49093591	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3755	49093591	84758304	13065	21216											
CCNT1	904	broad.mit.edu	37	chr12	49110386	49110386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtccacgccaaaacgacGggatgggctattttccagct	12	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49110386	T	T	49110386	3	4	9	1	0	0	0	0	1	0	0	0	2964	1116	39	1	2143	1	CCNT1	12	49110386	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16795	49110386	84741509	13066	21217											
ADCY6	112	broad.mit.edu	37	chr12	49168252	49168252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactgcggtgctatgtgccCgtgagcggacaatgctgcgg	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49168252	A	A	49168252	3	1	9	1	0	0	0	0	1	0	0	0	298	652	23	1	1326	1	ADCY6	12	49168252	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57866	49168252	84683643	13067	21218											
DDX23	9416	broad.mit.edu	37	chr12	49224336	49224336	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtggttggctagttcGgggggacaggaagacactgg	19	6	1	1	rs146973565	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49224336	T	T	49224336	2	4	9	1	0	0	0	0	0	0	0	1	4383	1103	39	1		1	DDX23	12	49224336	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56084	49224336	84627559	13068	21219											
DDX23	9416	broad.mit.edu	37	chr12	49224450	49224450	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactcttgcctgctcgtccCgtgcggccaatgcggtggat	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49224450	A	A	49224450	2	1	9	1	0	0	0	0	0	0	0	1	4383	639	23	1		1	DDX23	12	49224450	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	49224450	84627445	13069	21220											
DDX23	9416	broad.mit.edu	37	chr12	49227045	49227045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaacttttcccagcccaGggaagcagccttacttggcg	10	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49227045	T	T	49227045	1	4	9	0	1	0	0	0	0	0	0	0	4383	1015	35	2		2	DDX23	12	49227045	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2595	49227045	84624850	13070	21221											
DDX23	9416	broad.mit.edu	37	chr12	49227065	49227065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagcagccttacttggcGgtacttatgttttcccgact	11	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49227065	T	T	49227065	3	4	9	1	0	0	0	0	1	0	0	0	4383	1116	39	1	684	1	DDX23	12	49227065	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	49227065	84624830	13071	21222											
DDX23	9416	broad.mit.edu	37	chr12	49228231	49228231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgttgagccaactcacGggtgggagccaggatgatgg	15	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49228231	T	T	49228231	3	4	9	1	0	0	0	0	1	0	0	0	4383	1116	39	1	1054	1	DDX23	12	49228231	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1166	49228231	84623664	13072	21223											
DDX23	9416	broad.mit.edu	37	chr12	49237682	49237682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggtgcagagaagaaatGggagcattcccctaaagccc	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49237682	T	T	49237682	1	4	9	0	1	0	0	0	0	0	0	0	4383	1363	47	2		2	DDX23	12	49237682	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9451	49237682	84614213	13073	21224											
DDX23	9416	broad.mit.edu	37	chr12	49237736	49237736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtacctggatcgtttacGgtccttgtcccgtctgtgcc	10	13	1	0	rs143087510		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49237736	T	T	49237736	3	4	9	1	0	0	0	0	1	0	0	0	4383	1116	39	1	2215	1	DDX23	12	49237736	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54	49237736	84614159	13074	21225											
DDX23	9416	broad.mit.edu	37	chr12	49237775	49237775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatccttgtctcgatctcGgtccttcttattccgatccc	5	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49237775	T	T	49237775	2	4	9	1	0	0	0	0	0	0	0	1	4383	1124	39	1		1	DDX23	12	49237775	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	49237775	84614120	13075	21226											
DDX23	9416	broad.mit.edu	37	chr12	49237795	49237795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccttcttattccgatccCgctccttatctcgttctcgt	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49237795	A	A	49237795	3	1	9	1	0	0	0	0	1	0	0	0	4383	652	23	1	2274	1	DDX23	12	49237795	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	49237795	84614100	13076	21227											
DDX23	9416	broad.mit.edu	37	chr12	49239477	49239477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggtcccggtctctatccCgctctctgtcaggagtccgt	10	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49239477	A	A	49239477	3	1	9	1	0	0	0	0	1	0	0	0	4383	652	23	1	2437	1	DDX23	12	49239477	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1682	49239477	84612418	13077	21228											
CCDC65	85478	broad.mit.edu	37	chr12	49298071	49298071	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctaagctctgtaacgcGggccgaggcagaccgaggct	13	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49298071	T	T	49298071	1	4	9	0	1	0	0	0	0	0	0	0	2865	1131	39	1		1	CCDC65	12	49298071	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	58594	49298071	84553824	13078	21229											
CCDC65	85478	broad.mit.edu	37	chr12	49298805	49298805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtggagaactgtccttcGggaagtcaagaccagagaac	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49298805	T	T	49298805	3	4	9	1	0	0	0	0	1	0	0	0	2865	1116	39	1	215	1	CCDC65	12	49298805	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	734	49298805	84553090	13079	21230											
FKBP11	51303	broad.mit.edu	37	chr12	49317588	49317588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagatggtggaaatcccCgttttccataggccaagtga	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49317588	A	A	49317588	3	1	9	1	0	0	0	0	1	0	0	0	5960	652	23	1	305	1	FKBP11	12	49317588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18783	49317588	84534307	13080	21231											
ARF3	377	broad.mit.edu	37	chr12	49333512	49333512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctcatcagctcttcccGggcctcatttactcgctccc	5	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49333512	T	T	49333512	2	4	9	1	0	0	0	0	0	0	0	1	847	1115	39	1		1	ARF3	12	49333512	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15924	49333512	84518383	13081	21232											
ARF3	377	broad.mit.edu	37	chr12	49333532	49333532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcatttactcgctccCgatcattgctgtcgaccaca	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49333532	A	A	49333532	3	1	9	1	0	0	0	0	1	0	0	0	847	652	23	1	263	1	ARF3	12	49333532	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	49333532	84518363	13082	21233											
MLL2	8085	broad.mit.edu	37	chr12	49415693	49415693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatcaatgctagtccccCacaggaagaggggaggccag	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49415693	A	A	49415693	1	1	9	0	1	0	0	0	0	0	0	0	9714	609	21	2		2	MLL2	12	49415693	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	82161	49415693	84436202	13083	21234											
MLL2	8085	broad.mit.edu	37	chr12	49416395	49416395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttcgtagattttctccCgccggttggccacctcgttc	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49416395	A	A	49416395	3	1	9	1	0	0	0	0	1	0	0	0	9714	652	23	1	313	1	MLL2	12	49416395	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	702	49416395	84435500	13084	21235											
MLL2	8085	broad.mit.edu	37	chr12	49416438	49416438	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgatggtgccaatgtactCgataaccattgtgtgctttt	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49416438	A	A	49416438	4	1	9	1	0	0	0	0	0	1	0	0	9714	893	31	3	356	3	MLL2	12	49416438	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	49416438	84435457	13085	21236											
MLL2	8085	broad.mit.edu	37	chr12	49424970	49424970	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcacctccttgttgctGggggtaccctgtagtttctg	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49424970	T	T	49424970	2	4	9	1	0	0	0	0	0	0	0	1	9714	1335	47	2		2	MLL2	12	49424970	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8532	49424970	84426925	13086	21237											
MLL2	8085	broad.mit.edu	37	chr12	49427975	49427975	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcacacagagccttccGggacttgcggtgtacaccaa	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49427975	T	T	49427975	2	4	9	1	0	0	0	0	0	0	0	1	9714	1115	39	1		1	MLL2	12	49427975	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3005	49427975	84423920	13087	21238											
MLL2	8085	broad.mit.edu	37	chr12	49436844	49436844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttatacacaaagaggtacGggtcacagcctcaccttctg	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49436844	T	T	49436844	1	4	9	0	1	0	0	0	0	0	0	0	9714	1131	39	1		1	MLL2	12	49436844	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8869	49436844	84415051	13088	21239											
MLL2	8085	broad.mit.edu	37	chr12	49437176	49437176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttgccctcgaggccacGggattcttcatctgcaatat	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49437176	T	T	49437176	3	4	9	1	0	0	0	0	1	0	0	0	9714	1116	39	1	11234	1	MLL2	12	49437176	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	332	49437176	84414719	13089	21240											
MLL2	8085	broad.mit.edu	37	chr12	49445233	49445233	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcggctcctcaggccgggGtgacaggtgcggcccctcgg	18	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49445233	A	A	49445233	3	1	9	1	0	0	0	0	1	0	0	0	9714	1261	44	4	14560	4	MLL2	12	49445233	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8057	49445233	84406662	13090	21241											
MLL2	8085	broad.mit.edu	37	chr12	49446799	49446799	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtagttctcaaaccactcCgagttgggattcagttctgc	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49446799	A	A	49446799	2	1	9	1	0	0	0	0	0	0	0	1	9714	639	23	1		1	MLL2	12	49446799	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1566	49446799	84405096	13091	21242											
MLL2	8085	broad.mit.edu	37	chr12	49446826	49446826	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattcagttctgctgagccCgccccacaggcccggcacac	11	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49446826	A	A	49446826	2	1	9	1	0	0	0	0	0	0	0	1	9714	639	23	1		1	MLL2	12	49446826	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	49446826	84405069	13092	21243											
MLL2	8085	broad.mit.edu	37	chr12	49448669	49448669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcaaatcctcatgtgccCtcaaacaagctacctgcagt	5	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49448669	A	A	49448669	1	1	9	0	1	0	0	0	0	0	0	0	9714	696	24	2		2	MLL2	12	49448669	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1843	49448669	84403226	13093	21244											
RHEBL1	121268	broad.mit.edu	37	chr12	49460260	49460260	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccccagggccacttaccGggttttcccatggccttcat	8	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49460260	T	T	49460260	2	4	9	1	0	0	0	0	0	0	0	1	13438	1130	39	1		1	RHEBL1	12	49460260	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11591	49460260	84391635	13094	21245											
LMBR1L	55716	broad.mit.edu	37	chr12	49504379	49504379	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgaggtgcctctgggccCggggaggacgagcggggagg	22	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49504379	A	A	49504379	1	1	9	0	1	0	0	0	0	0	0	0	8915	667	23	1		1	LMBR1L	12	49504379	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	44119	49504379	84347516	13095	21246											
TUBA1A	7846	broad.mit.edu	37	chr12	49580107	49580107	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acataccagcttgcgaattcGgtccaacacgaggtcaatga	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49580107	T	T	49580107	2	4	9	1	0	0	0	0	0	0	0	1	16869	1124	39	1		1	TUBA1A	12	49580107	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	75728	49580107	84271788	13096	21247											
TUBA1A	7846	broad.mit.edu	37	chr12	49580429	49580429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtctacaaacactgccCggggcacatgcttgccagcc	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49580429	A	A	49580429	3	1	9	1	0	0	0	0	1	0	0	0	16869	652	23	1	1176	1	TUBA1A	12	49580429	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	322	49580429	84271466	13097	21248											
TUBA1C	84790	broad.mit.edu	37	chr12	49666924	49666924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcgagttttcagaggccCgtgaggacatggctgccctt	14	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49666924	A	A	49666924	3	1	9	1	0	0	0	0	1	0	0	0	16871	652	23	1	1278	1	TUBA1C	12	49666924	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86495	49666924	84184971	13098	21249											
TROAP	10024	broad.mit.edu	37	chr12	49722973	49722973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgttgcggcgtctcacCgttcaacctaaaacccggtt	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49722973	A	A	49722973	2	1	9	1	0	0	0	0	0	0	0	1	16700	639	23	1		1	TROAP	12	49722973	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	56049	49722973	84128922	13099	21250											
SPATS2	65244	broad.mit.edu	37	chr12	49894063	49894063	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatggtcagccattcccCaagttcattcattcatgact	6	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49894063	A	A	49894063	1	1	9	0	1	0	0	0	0	0	0	0	15135	609	21	2		2	SPATS2	12	49894063	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	171090	49894063	83957832	13100	21251											
KCNH3	23416	broad.mit.edu	37	chr12	49935419	49935419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgtgcccagggctccCgttctggtgtctcctggatg	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49935419	A	A	49935419	3	1	9	1	0	0	0	0	1	0	0	0	8103	652	23	1	327	1	KCNH3	12	49935419	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41356	49935419	83916476	13101	21252											
KCNH3	23416	broad.mit.edu	37	chr12	49948156	49948156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgtgagctgccccggcGggagcaggtggtaaaggcca	18	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49948156	T	T	49948156	3	4	9	1	0	0	0	0	1	0	0	0	8103	1116	39	1	1997	1	KCNH3	12	49948156	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12737	49948156	83903739	13102	21253											
MCRS1	10445	broad.mit.edu	37	chr12	49954135	49954135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagttcagcacttggtccCctttgggcagcggctgcact	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49954135	A	A	49954135	3	1	9	1	0	0	0	0	1	0	0	0	9492	623	22	2	592	2	MCRS1	12	49954135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5979	49954135	83897760	13103	21254											
MCRS1	10445	broad.mit.edu	37	chr12	49959345	49959345	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggagggttcactcccCgaacagcgccctggttccac	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49959345	A	A	49959345	2	1	9	1	0	0	0	0	0	0	0	1	9492	639	23	1		1	MCRS1	12	49959345	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5210	49959345	83892550	13104	21255											
FAM186B	84070	broad.mit.edu	37	chr12	49981528	49981528	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagcctccatctgcttccCctgttggctgggagtgggga	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49981528	T	T	49981528	3	4	9	1	0	0	0	0	1	0	0	0	5558	623	22	4	143	4	FAM186B	12	49981528	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22183	49981528	83870367	13105	21256											
PRPF40B	25766	broad.mit.edu	37	chr12	50025754	50025754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctctgccctgcagtccCgtgagtctgacttggaatgc	12	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50025754	A	A	50025754	1	1	9	0	1	0	0	0	0	0	0	0	12678	667	23	1		1	PRPF40B	12	50025754	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44226	50025754	83826141	13106	21257											
PRPF40B	25766	broad.mit.edu	37	chr12	50026567	50026567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttactggggctggaatacGggaggcataggtgggaataa	16	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50026567	T	T	50026567	1	4	9	0	1	0	0	0	0	0	0	0	12678	1131	39	1		1	PRPF40B	12	50026567	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	813	50026567	83825328	13107	21258											
PRPF40B	25766	broad.mit.edu	37	chr12	50027294	50027294	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaccagagtaaagagtccCgctggacccggcccaaggat	11	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50027294	A	A	50027294	3	1	9	1	0	0	0	0	1	0	0	0	12678	652	23	1	504	1	PRPF40B	12	50027294	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	727	50027294	83824601	13108	21259											
PRPF40B	25766	broad.mit.edu	37	chr12	50028378	50028378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggtggtcaccgaccccCgttacaggtaggcctgggca	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50028378	A	A	50028378	3	1	9	1	0	0	0	0	1	0	0	0	12678	652	23	1	970	1	PRPF40B	12	50028378	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1084	50028378	83823517	13109	21260											
PRPF40B	25766	broad.mit.edu	37	chr12	50029150	50029150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttatatgctccacaggcGggcagaacagacctttgggg	13	10	0	2	rs140814123	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50029150	T	T	50029150	3	4	9	1	0	0	0	0	1	0	0	0	12678	1116	39	1	1153	1	PRPF40B	12	50029150	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	772	50029150	83822745	13110	21261											
FMNL3	91010	broad.mit.edu	37	chr12	50041127	50041127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctcctcctgcttcttgcGggcttcattctcttgttctg	7	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50041127	T	T	50041127	3	4	9	1	0	0	0	0	1	0	0	0	6011	1116	39	1	292	1	FMNL3	12	50041127	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11977	50041127	83810768	13111	21262											
FMNL3	91010	broad.mit.edu	37	chr12	50050679	50050679	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgaccaggttgaatcCgtactgcaagggaaaggaca	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50050679	A	A	50050679	4	1	9	1	0	0	0	0	0	1	0	0	6011	661	23	1	2441	1	FMNL3	12	50050679	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9552	50050679	83801216	13112	21263											
TMBIM6	7009	broad.mit.edu	37	chr12	50152020	50152020	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttctaggagttggcctGggccctgccctggagttttg	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50152020	T	T	50152020	2	4	9	1	0	0	0	0	0	0	0	1	16106	1335	47	2		2	TMBIM6	12	50152020	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101341	50152020	83699875	13113	21264											
TMBIM6	7009	broad.mit.edu	37	chr12	50156633	50156633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgtcaaaaaattaattGggtgatttttctccatttct	5	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50156633	T	T	50156633	1	4	9	0	1	0	0	0	0	0	0	0	16106	1363	47	2		2	TMBIM6	12	50156633	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4613	50156633	83695262	13114	21265											
NCKAP5L	57701	broad.mit.edu	37	chr12	50189231	50189231	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctcttattgggcttgccCaggcttggggctgaggttgg	18	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50189231	G	G	50189231	2	3	9	1	0	0	0	0	0	0	0	1	10319	581	21	4		4	NCKAP5L	12	50189231	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32598	50189231	83662664	13115	21266											
FAIM2	23017	broad.mit.edu	37	chr12	50290823	50290823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatactcactaggatgccCagtaccagcctgggttggcc	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50290823	A	A	50290823	3	1	9	1	0	0	0	0	1	0	0	0	5422	595	21	2	557	2	FAIM2	12	50290823	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101592	50290823	83561072	13116	21267											
AQP6	363	broad.mit.edu	37	chr12	50368097	50368097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggtccagagtaactccCtctgtccaggtccggaacag	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50368097	A	A	50368097	1	1	9	0	1	0	0	0	0	0	0	0	832	696	24	2		2	AQP6	12	50368097	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	77274	50368097	83483798	13117	21268											
AQP6	363	broad.mit.edu	37	chr12	50369316	50369316	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaacttcgtcctgttcccCgacaccaagaccctggcgca	7	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50369316	A	A	50369316	2	1	9	1	0	0	0	0	0	0	0	1	832	639	23	1		1	AQP6	12	50369316	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1219	50369316	83482579	13118	21269											
RACGAP1	29127	broad.mit.edu	37	chr12	50384122	50384122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagacttgcttttgctccCaaatctacaataaaaagaga	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50384122	A	A	50384122	3	1	9	1	0	0	0	0	1	0	0	0	13085	594	21	2	74	2	RACGAP1	12	50384122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14806	50384122	83467773	13119	21270											
RACGAP1	29127	broad.mit.edu	37	chr12	50388148	50388148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttttatttaaaaacctcCgaattaacacaaataacaaa	1	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50388148	A	A	50388148	1	1	9	0	1	0	0	0	0	0	0	0	13085	667	23	1		1	RACGAP1	12	50388148	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4026	50388148	83463747	13120	21271											
RACGAP1	29127	broad.mit.edu	37	chr12	50400201	50400201	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatcactgttctagcacGgaaaacaatacacaccagct	5	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50400201	T	T	50400201	1	4	9	0	1	0	0	0	0	0	0	0	13085	1131	39	1		1	RACGAP1	12	50400201	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12053	50400201	83451694	13121	21272											
RACGAP1	29127	broad.mit.edu	37	chr12	50410473	50410473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctgctcaaacagattcCgcacattcagcatcatagta	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50410473	A	A	50410473	3	1	9	1	0	0	0	0	1	0	0	0	13085	652	23	1	1936	1	RACGAP1	12	50410473	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10272	50410473	83441422	13122	21273											
SMARCD1	6602	broad.mit.edu	37	chr12	50481189	50481189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttctaacactttcaatcCggctaagtcagatgccgagg	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50481189	A	A	50481189	3	1	9	1	0	0	0	0	1	0	0	0	14891	652	23	1	593	1	SMARCD1	12	50481189	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70716	50481189	83370706	13123	21274											
LASS5	91012	broad.mit.edu	37	chr12	50528445	50528445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccatgaagcataaggccCgattatctcccaactctcaa	5	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50528445	A	A	50528445	3	1	9	1	0	0	0	0	1	0	0	0	8714	652	23	1	273	1	LASS5	12	50528445	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47256	50528445	83323450	13124	21275											
LASS5	91012	broad.mit.edu	37	chr12	50532379	50532379	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagttatgccagcactgtcGgatgtcccagaaccaaggtg	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50532379	T	T	50532379	2	4	9	1	0	0	0	0	0	0	0	1	8714	1124	39	1		1	LASS5	12	50532379	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3934	50532379	83319516	13125	21276											
LIMA1	51474	broad.mit.edu	37	chr12	50570878	50570878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatcctcatcataatacCgatttctctttatctgttct	2	13	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50570878	A	A	50570878	3	1	9	1	0	0	0	0	1	0	0	0	8868	652	23	1	34	1	LIMA1	12	50570878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38499	50570878	83281017	13126	21277											
LIMA1	51474	broad.mit.edu	37	chr12	50570932	50570932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaccacttctccctccCagagttccacatcctgggat	6	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50570932	A	A	50570932	3	1	9	1	0	0	0	0	1	0	0	0	8868	595	21	2	88	2	LIMA1	12	50570932	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54	50570932	83280963	13127	21278											
LIMA1	51474	broad.mit.edu	37	chr12	50571298	50571298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcctttcctgataggtGgggacacagtttttgggctc	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50571298	T	T	50571298	3	4	9	1	0	0	0	0	1	0	0	0	8868	1348	47	2	454	2	LIMA1	12	50571298	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	366	50571298	83280597	13128	21279											
LIMA1	51474	broad.mit.edu	37	chr12	50594567	50594567	+	Missense_Mutation	SNP	C	A	A													cttttcaacctaccttttccCcttcctgatgggtgatgcag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50594567	A	A	50594567	3	1	9	1	0	0	0	0	1	0	0	0	8868	623	22	2	1337	2	LIMA1	12	50594567	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23269	50594567	83257328	13129	21280	142	2									
LIMA1	51474	broad.mit.edu	37	chr12	50594577	50594577	+	Missense_Mutation	SNP	G	T	T													taccttttccccttcctgatGggtgatgcagacctcaggac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50594577	T	T	50594577	3	4	9	1	0	0	0	0	1	0	0	0	8868	1348	47	2	1347	2	LIMA1	12	50594577	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	50594577	83257318	13130	21281	142	2									
LIMA1	51474	broad.mit.edu	37	chr12	50615812	50615812	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaattcttaccttagtttGagttggttcacctttctcaa	5	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50615812	T	T	50615812	3	4	9	1	0	0	0	0	1	0	0	0	8868	1299	45	3	1692	3	LIMA1	12	50615812	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21235	50615812	83236083	13131	21282											
LIMA1	51474	broad.mit.edu	37	chr12	50642475	50642475	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacaagagaaagttctttGgctgttaccctcaatgatag	9	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50642475	T	T	50642475	2	4	9	1	0	0	0	0	0	0	0	1	8868	1335	47	2		2	LIMA1	12	50642475	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26663	50642475	83209420	13132	21283											
DIP2B	57609	broad.mit.edu	37	chr12	51019819	51019819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctatctccttacagccCgcagacacaaggtaggcaat	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51019819	A	A	51019819	3	1	9	1	0	0	0	0	1	0	0	0	4568	652	23	1	167	1	DIP2B	12	51019819	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	377344	51019819	82832076	13133	21284											
TMPRSS12	283471	broad.mit.edu	37	chr12	51279191	51279191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagaccaagtaattttcCtttaaaatattttctgaagc	6	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51279191	A	A	51279191	1	1	9	0	1	0	0	0	0	0	0	0	16367	696	24	2		2	TMPRSS12	12	51279191	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	259372	51279191	82572704	13134	21285											
TMPRSS12	283471	broad.mit.edu	37	chr12	51279217	51279217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattttctgaagccagaaGggaacttgtcaaacaaggcc	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51279217	T	T	51279217	1	4	9	0	1	0	0	0	0	0	0	0	16367	1015	35	2		2	TMPRSS12	12	51279217	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	51279217	82572678	13135	21286											
SLC11A2	4891	broad.mit.edu	37	chr12	51386055	51386055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagcaacaagcagagtgGggatgatggcaatagagcga	15	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51386055	T	T	51386055	3	4	9	1	0	0	0	0	1	0	0	0	14494	1232	43	2	518	2	SLC11A2	12	51386055	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106838	51386055	82465840	13136	21287											
LETMD1	25875	broad.mit.edu	37	chr12	51442935	51442935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgggtcgtcatttccccCgcttctatgtcctgtacaca	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51442935	A	A	51442935	3	1	9	1	0	0	0	0	1	0	0	0	8808	652	23	1	247	1	LETMD1	12	51442935	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56880	51442935	82408960	13137	21288											
LETMD1	25875	broad.mit.edu	37	chr12	51447667	51447667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacagacttccatctcccCaacatcttgaagatgtatca	5	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51447667	A	A	51447667	1	1	9	0	1	0	0	0	0	0	0	0	8808	609	21	2		2	LETMD1	12	51447667	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4732	51447667	82404228	13138	21289											
LETMD1	25875	broad.mit.edu	37	chr12	51450120	51450120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctttcccctcctatgtGgttgtgttacagaaagcctt	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51450120	T	T	51450120	1	4	9	0	1	0	0	0	0	0	0	0	8808	1363	47	2		2	LETMD1	12	51450120	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2453	51450120	82401775	13139	21290											
CSRNP2	81566	broad.mit.edu	37	chr12	51467661	51467661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgctcacgcagaatctctCgatggttcacctcctgttcc	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51467661	A	A	51467661	3	1	9	1	0	0	0	0	1	0	0	0	3998	884	31	3	1287	3	CSRNP2	12	51467661	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17541	51467661	82384234	13140	21291											
TFCP2	7024	broad.mit.edu	37	chr12	51501031	51501031	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttacctctgtgagtatGgttgtctcataggaaggctg	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51501031	T	T	51501031	2	4	9	1	0	0	0	0	0	0	0	1	15918	1335	47	2		2	TFCP2	12	51501031	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33370	51501031	82350864	13141	21292											
TFCP2	7024	broad.mit.edu	37	chr12	51502993	51502993	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtatctatttgtactcGgaatggcacccccttttctc	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51502993	T	T	51502993	2	4	9	1	0	0	0	0	0	0	0	1	15918	1124	39	1		1	TFCP2	12	51502993	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1962	51502993	82348902	13142	21293											
TFCP2	7024	broad.mit.edu	37	chr12	51504733	51504733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagttgagttggattagccCtaggatcgattatacccaca	9	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51504733	A	A	51504733	3	1	9	1	0	0	0	0	1	0	0	0	15918	681	24	2	1061	2	TFCP2	12	51504733	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1740	51504733	82347162	13143	21294											
BIN2	51411	broad.mit.edu	37	chr12	51693450	51693450	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcctccaggtggtgtcGggcactgtcatagtccacga	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51693450	T	T	51693450	2	4	9	1	0	0	0	0	0	0	0	1	1439	1124	39	1		1	BIN2	12	51693450	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	188717	51693450	82158445	13144	21295											
BIN2	51411	broad.mit.edu	37	chr12	51696504	51696504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctcctcatgaccgtccCactcgctgctgtagatctcc	7	17	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51696504	A	A	51696504	3	1	9	1	0	0	0	0	1	0	0	0	1439	595	21	2	1459	2	BIN2	12	51696504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3054	51696504	82155391	13145	21296											
CELA1	1990	broad.mit.edu	37	chr12	51723538	51723538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggagacattacagcccCggctggacacaaagctggtc	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51723538	A	A	51723538	3	1	9	1	0	0	0	0	1	0	0	0	3240	652	23	1	95	1	CELA1	12	51723538	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27034	51723538	82128357	13146	21297											
GALNT6	11226	broad.mit.edu	37	chr12	51759271	51759271	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgctggcccccagcagccGggcggtgatcagccccttcc	12	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51759271	T	T	51759271	2	4	9	1	0	0	0	0	0	0	0	1	6279	1115	39	1		1	GALNT6	12	51759271	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35733	51759271	82092624	13147	21298											
GALNT6	11226	broad.mit.edu	37	chr12	51773263	51773263	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtggccgttcccagaaGggcttcagttcagctggggt	16	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51773263	T	T	51773263	2	4	9	1	0	0	0	0	0	0	0	1	6279	987	35	2		2	GALNT6	12	51773263	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13992	51773263	82078632	13148	21299											
SLC4A8	9498	broad.mit.edu	37	chr12	51853703	51853703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttaaggtggtggttccCaagttgtcagatgtttcttt	10	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51853703	A	A	51853703	1	1	9	0	1	0	0	0	0	0	0	0	14773	609	21	2		2	SLC4A8	12	51853703	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80440	51853703	81998192	13149	21300											
SLC4A8	9498	broad.mit.edu	37	chr12	51853821	51853821	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatattttggaccgtccCattgttgcctttgtgaggct	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51853821	A	A	51853821	2	1	9	1	0	0	0	0	0	0	0	1	14773	581	21	2		2	SLC4A8	12	51853821	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	118	51853821	81998074	13150	21301											
SLC4A8	9498	broad.mit.edu	37	chr12	51853886	51853886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaacagaagtgccaatccCaacaaggtaaaggcaaagat	8	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51853886	A	A	51853886	3	1	9	1	0	0	0	0	1	0	0	0	14773	594	21	2	1037	2	SLC4A8	12	51853886	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	51853886	81998009	13151	21302											
SLC4A8	9498	broad.mit.edu	37	chr12	51888800	51888800	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcatctacctgcggcatgtGccgctgcgcaaagtgcacct	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51888800	C	C	51888800	2	2	9	1	0	0	0	0	0	0	0	1	14773	1306	46	4		4	SLC4A8	12	51888800	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34914	51888800	81963095	13152	21303											
SLC4A8	9498	broad.mit.edu	37	chr12	51890999	51890999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagcatgtctggaatccCgagggttatatttaggagct	12	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51890999	A	A	51890999	1	1	9	0	1	0	0	0	0	0	0	0	14773	667	23	1		1	SLC4A8	12	51890999	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2199	51890999	81960896	13153	21304											
SLC4A8	9498	broad.mit.edu	37	chr12	51901248	51901248	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctgggatggaagatttGggccgtgtggtgcctcaggg	18	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901248	T	T	51901248	1	4	9	0	1	0	0	0	0	0	0	0	14773	1363	47	2		2	SLC4A8	12	51901248	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	10249	51901248	81950647	13154	21305											
SCN8A	6334	broad.mit.edu	37	chr12	52106712	52106712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacctccaaagcttcctcCgcaacccataaaattgccag	4	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52106712	A	A	52106712	1	1	9	0	1	0	0	0	0	0	0	0	14037	667	23	1		1	SCN8A	12	52106712	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	205464	52106712	81745183	13155	21306											
SCN8A	6334	broad.mit.edu	37	chr12	52115716	52115716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattgataaggcagctacCgatgacagtgtaaggaagaa	11	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52115716	A	A	52115716	1	1	9	0	1	0	0	0	0	0	0	0	14037	667	23	1		1	SCN8A	12	52115716	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9004	52115716	81736179	13156	21307											
SCN8A	6334	broad.mit.edu	37	chr12	52156343	52156343	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctcatagccatggatccCtactattatttccaagaagg	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52156343	A	A	52156343	2	1	9	1	0	0	0	0	0	0	0	1	14037	668	24	2		2	SCN8A	12	52156343	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40627	52156343	81695552	13157	21308											
SCN8A	6334	broad.mit.edu	37	chr12	52156406	52156406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtctccctcagtttaatGgaactgagtctagcagacgt	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52156406	T	T	52156406	3	4	9	1	0	0	0	0	1	0	0	0	14037	1348	47	2	2544	2	SCN8A	12	52156406	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	52156406	81695489	13158	21309											
SCN8A	6334	broad.mit.edu	37	chr12	52159702	52159702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccttcctcattgtctttcGagtgttgtgcggggagtgga	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52159702	T	T	52159702	3	4	9	1	0	0	0	0	1	0	0	0	14037	1058	37	3	2850	3	SCN8A	12	52159702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3296	52159702	81692193	13159	21310											
SCN8A	6334	broad.mit.edu	37	chr12	52200137	52200137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgagtcatccgattggccCgtattgggcgcatcttgcgt	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52200137	A	A	52200137	3	1	9	1	0	0	0	0	1	0	0	0	14037	652	23	1	4969	1	SCN8A	12	52200137	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40435	52200137	81651758	13160	21311											
SCN8A	6334	broad.mit.edu	37	chr12	52200275	52200275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcatcttctccatttttGggatgtccaattttgcatat	6	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52200275	T	T	52200275	3	4	9	1	0	0	0	0	1	0	0	0	14037	1348	47	2	5107	2	SCN8A	12	52200275	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138	52200275	81651620	13161	21312											
ACVRL1	94	broad.mit.edu	37	chr12	52309838	52309838	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcctggctgtgatgcactCacagggcagcgattacctgg	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52309838	A	A	52309838	4	1	9	1	0	0	0	0	0	1	0	0	225	838	29	3	1093	3	ACVRL1	12	52309838	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109563	52309838	81542057	13162	21313											
KRT7	3855	broad.mit.edu	37	chr12	52627411	52627411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatcgacaaggtgagcGggactggacctcgcctctcc	11	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52627411	T	T	52627411	1	4	9	0	1	0	0	0	0	0	0	0	8554	1131	39	1		1	KRT7	12	52627411	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	317573	52627411	81224484	13163	21314											
KRT86	3892	broad.mit.edu	37	chr12	52698798	52698798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatcgacttcctgaggcGgctgtatgaggaggtgcggg	19	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52698798	T	T	52698798	3	4	9	1	0	0	0	0	1	0	0	0	8571	1116	39	1	736	1	KRT86	12	52698798	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71387	52698798	81153097	13164	21315											
KRT86	3892	broad.mit.edu	37	chr12	52699088	52699088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaagctggacaacagccGggacctgaacatggactgca	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52699088	T	T	52699088	3	4	9	1	0	0	0	0	1	0	0	0	8571	1116	39	1	818	1	KRT86	12	52699088	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	290	52699088	81152807	13165	21316											
KRT86	3892	broad.mit.edu	37	chr12	52699480	52699480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccacggtgatcaggcacGgggagaccctgcgccgcacc	15	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52699480	T	T	52699480	3	4	9	1	0	0	0	0	1	0	0	0	8571	1116	39	1	956	1	KRT86	12	52699480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	392	52699480	81152415	13166	21317											
KRT83	3889	broad.mit.edu	37	chr12	52709079	52709079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctacattttccttttcaGggctcaagatacttacagac	6	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52709079	T	T	52709079	1	4	9	0	1	0	0	0	0	0	0	0	8568	1015	35	2		2	KRT83	12	52709079	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9599	52709079	81142816	13167	21318											
KRT83	3889	broad.mit.edu	37	chr12	52709134	52709134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttcacacagcctgagtGgggaaaaagtaaggaagggg	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52709134	T	T	52709134	1	4	9	0	1	0	0	0	0	0	0	0	8568	1363	47	2		2	KRT83	12	52709134	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	55	52709134	81142761	13168	21319											
KRT83	3889	broad.mit.edu	37	chr12	52711714	52711714	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttctttagagccacaaactCgttctctgctgtggctcgaa	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52711714	A	A	52711714	4	1	9	1	0	0	0	0	0	1	0	0	8568	893	31	3	875	3	KRT83	12	52711714	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2580	52711714	81140181	13169	21320											
KRT85	3891	broad.mit.edu	37	chr12	52757156	52757156	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccatcttgactatgacCgaggtgtctgagatgtgggc	13	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52757156	A	A	52757156	2	1	9	1	0	0	0	0	0	0	0	1	8570	639	23	1		1	KRT85	12	52757156	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45442	52757156	81094739	13170	21321											
KRT84	3890	broad.mit.edu	37	chr12	52774911	52774911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagcctctggatcaggcGggtcagttcgttgatctcgt	12	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52774911	T	T	52774911	3	4	9	1	0	0	0	0	1	0	0	0	8569	1116	39	1	662	1	KRT84	12	52774911	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17755	52774911	81076984	13171	21322											
KRT82	3888	broad.mit.edu	37	chr12	52799581	52799581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctcctcctggttcccttGgaccagaacaagaccagacc	8	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52799581	T	T	52799581	1	4	9	0	1	0	0	0	0	0	0	0	8567	1363	47	2		2	KRT82	12	52799581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24670	52799581	81052314	13172	21323											
KRT82	3888	broad.mit.edu	37	chr12	52799730	52799730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttaccctctgcacagtcGggtctatctccagtgccagt	8	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52799730	T	T	52799730	3	4	9	1	0	0	0	0	1	0	0	0	8567	1116	39	1	1245	1	KRT82	12	52799730	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149	52799730	81052165	13173	21324											
KRT6B	3854	broad.mit.edu	37	chr12	52840965	52840965	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggactgagagctggcGgcagcacttcagtgcttgta	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52840965	T	T	52840965	1	4	9	0	1	0	0	0	0	0	0	0	8552	1131	39	1		1	KRT6B	12	52840965	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	41235	52840965	81010930	13174	21325											
KRT6B	3854	broad.mit.edu	37	chr12	52841590	52841590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgccctccagcagcttgcGgtaggtggcgatctccacat	11	15	1	0	rs138479175	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52841590	T	T	52841590	3	4	9	1	0	0	0	0	1	0	0	0	8552	1116	39	1	310	1	KRT6B	12	52841590	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	625	52841590	81010305	13175	21326											
KRT6B	3854	broad.mit.edu	37	chr12	52841740	52841740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttgagggccatctcccCacgctgctcagcatcagcaa	8	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52841740	A	A	52841740	3	1	9	1	0	0	0	0	1	0	0	0	8552	594	21	2	460	2	KRT6B	12	52841740	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	150	52841740	81010155	13176	21327											
KRT6C	286887	broad.mit.edu	37	chr12	52864975	52864975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcaatctcctcgtattGggccttgacctcagcgatga	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52864975	T	T	52864975	3	4	9	1	0	0	0	0	1	0	0	0	8553	1357	47	2	696	2	KRT6C	12	52864975	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23235	52864975	80986920	13177	21328											
KRT6A	3853	broad.mit.edu	37	chr12	52882251	52882251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagggcatcctccagccCttccagcttgttcttggcat	9	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52882251	A	A	52882251	3	1	9	1	0	0	0	0	1	0	0	0	8551	681	24	2	421	2	KRT6A	12	52882251	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17276	52882251	80969644	13178	21329											
KRT6A	3853	broad.mit.edu	37	chr12	52884509	52884509	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgtgggtctgcatctgGgacagctcctgcagaacaga	14	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52884509	T	T	52884509	2	4	9	1	0	0	0	0	0	0	0	1	8551	1219	43	2		2	KRT6A	12	52884509	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2258	52884509	80967386	13179	21330											
KRT6A	3853	broad.mit.edu	37	chr12	52885373	52885373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccaggcggccccgttcccCgacaatgctgtccagctgcc	11	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52885373	A	A	52885373	3	1	9	1	0	0	0	0	1	0	0	0	8551	652	23	1	1038	1	KRT6A	12	52885373	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	864	52885373	80966522	13180	21331											
KRT6A	3853	broad.mit.edu	37	chr12	52886397	52886397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctctggtctggggaccCtgaagtgccccatggagggc	15	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52886397	A	A	52886397	1	1	9	0	1	0	0	0	0	0	0	0	8551	696	24	2		2	KRT6A	12	52886397	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1024	52886397	80965498	13181	21332											
KRT5	3852	broad.mit.edu	37	chr12	52911842	52911842	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaagtgagctccacgcttaGagagcatagctgcaggctgc	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52911842	T	T	52911842	1	4	9	0	1	0	0	0	0	0	0	0	8550	957	33	3		3	KRT5	12	52911842	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25445	52911842	80940053	13182	21333											
KRT71	112802	broad.mit.edu	37	chr12	52943932	52943932	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgtagccctcgaggatGggctccaggttgttcttgca	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52943932	T	T	52943932	2	4	9	1	0	0	0	0	0	0	0	1	8555	1335	47	2		2	KRT71	12	52943932	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32090	52943932	80907963	13183	21334											
KRT74	121391	broad.mit.edu	37	chr12	52965653	52965653	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccctccccagcctcctGggctgaagtcctgagcagag	11	17	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52965653	T	T	52965653	1	4	9	0	1	0	0	0	0	0	0	0	8558	1363	47	2		2	KRT74	12	52965653	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21721	52965653	80886242	13184	21335											
KRT74	121391	broad.mit.edu	37	chr12	52967140	52967140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaccttgatctgttccCgctcctgggcgcgcaccttc	9	17	2	1	rs148593059		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52967140	A	A	52967140	3	1	9	1	0	0	0	0	1	0	0	0	8558	652	23	1	1203	1	KRT74	12	52967140	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1487	52967140	80884755	13185	21336											
KRT72	140807	broad.mit.edu	37	chr12	52979802	52979802	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtggcacagctgctcccCgaggttttggcaaggggatc	15	10	0	0	rs149656096		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52979802	A	A	52979802	2	1	9	1	0	0	0	0	0	0	0	1	8556	639	23	1		1	KRT72	12	52979802	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12662	52979802	80872093	13186	21337											
KRT73	319101	broad.mit.edu	37	chr12	53011911	53011911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaccttgatctgctccCgctcctgggcacgcactttc	8	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53011911	A	A	53011911	3	1	9	1	0	0	0	0	1	0	0	0	8557	652	23	1	1260	1	KRT73	12	53011911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32109	53011911	80839984	13187	21338											
KRT73	319101	broad.mit.edu	37	chr12	53012022	53012022	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgggcgggcacaacgacGgacacacggaccccaaggcc	13	18	0	0	rs659436	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53012022	T	T	53012022	3	4	9	1	0	0	0	0	1	0	0	0	8557	1116	39	1	1371	1	KRT73	12	53012022	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	111	53012022	80839873	13188	21339											
KRT2	3849	broad.mit.edu	37	chr12	53039159	53039159	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactggaccctctacctcCagaacctccaaaggcagcct	8	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53039159	A	A	53039159	4	1	9	1	0	0	0	0	0	1	0	0	8528	603	21	2	359	2	KRT2	12	53039159	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27137	53039159	80812736	13189	21340											
KRT76	51350	broad.mit.edu	37	chr12	53163322	53163322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagagggttttttgaatGggctacttacaaatgcacac	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53163322	T	T	53163322	1	4	9	0	1	0	0	0	0	0	0	0	8560	1363	47	2		2	KRT76	12	53163322	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	124163	53163322	80688573	13190	21341											
KRT76	51350	broad.mit.edu	37	chr12	53165035	53165035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaattagcatagtgaccCggaaacaaacacttgatcct	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53165035	A	A	53165035	1	1	9	0	1	0	0	0	0	0	0	0	8560	667	23	1		1	KRT76	12	53165035	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1713	53165035	80686860	13191	21342											
KRT76	51350	broad.mit.edu	37	chr12	53165683	53165683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacattttcaatctcagccCgtagcctctggatcatcctg	7	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53165683	A	A	53165683	3	1	9	1	0	0	0	0	1	0	0	0	8560	652	23	1	697	1	KRT76	12	53165683	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	648	53165683	80686212	13192	21343											
KRT76	51350	broad.mit.edu	37	chr12	53170826	53170826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagccacagctgctccgccCtcccccaaagcctccagccc	6	22	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53170826	A	A	53170826	3	1	9	1	0	0	0	0	1	0	0	0	8560	681	24	2	1702	2	KRT76	12	53170826	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5143	53170826	80681069	13193	21344											
KRT18	3875	broad.mit.edu	37	chr12	53344166	53344166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcagattgacaatgccCgtcttgctgctgatgacttt	9	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53344166	A	A	53344166	3	1	9	1	0	0	0	0	1	0	0	0	8526	652	23	1	478	1	KRT18	12	53344166	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	173340	53344166	80507729	13194	21345											
EIF4B	1975	broad.mit.edu	37	chr12	53432296	53432296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtctcgcacctgatacCgtgttaagagttcttgggtt	12	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53432296	A	A	53432296	1	1	9	0	1	0	0	0	0	0	0	0	5069	667	23	1		1	EIF4B	12	53432296	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88130	53432296	80419599	13195	21346											
TENC1	23371	broad.mit.edu	37	chr12	53451610	53451610	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcttgtctacacatctGgagtctagtgagtgctctat	10	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53451610	T	T	53451610	4	4	9	1	0	0	0	0	0	1	0	0	15880	1349	47	2	1171	2	TENC1	12	53451610	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19314	53451610	80400285	13196	21347											
TENC1	23371	broad.mit.edu	37	chr12	53452849	53452849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctccttgacccacacccGgggtcccctggatggcagtc	12	16	0	1	rs150698661	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53452849	T	T	53452849	3	4	9	1	0	0	0	0	1	0	0	0	15880	1116	39	1	1603	1	TENC1	12	53452849	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1239	53452849	80399046	13197	21348											
SPRYD3	84926	broad.mit.edu	37	chr12	53459657	53459657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctactttgactttctcccCgcagctcagcattccaatgg	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53459657	A	A	53459657	3	1	9	1	0	0	0	0	1	0	0	0	15227	652	23	1	44	1	SPRYD3	12	53459657	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6808	53459657	80392238	13198	21349											
SPRYD3	84926	broad.mit.edu	37	chr12	53461481	53461481	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccagggtgcctgttcttGggatagtcctgcaccaagaa	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53461481	T	T	53461481	2	4	9	1	0	0	0	0	0	0	0	1	15227	1335	47	2		2	SPRYD3	12	53461481	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1824	53461481	80390414	13199	21350											
ESPL1	9700	broad.mit.edu	37	chr12	53663351	53663351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagctatttgatgccagtGgccatggtctaaatgaagca	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53663351	T	T	53663351	3	4	9	1	0	0	0	0	1	0	0	0	5295	1348	47	2	631	2	ESPL1	12	53663351	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	201870	53663351	80188544	13200	21351											
ESPL1	9700	broad.mit.edu	37	chr12	53676085	53676085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgctgtctgtgcttcGggatcctgccctccagaagt	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53676085	T	T	53676085	3	4	9	1	0	0	0	0	1	0	0	0	5295	1116	39	1	2707	1	ESPL1	12	53676085	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12734	53676085	80175810	13201	21352											
ESPL1	9700	broad.mit.edu	37	chr12	53677885	53677885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcgagctggagctggccCgcaatgacattgatctctgt	14	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53677885	A	A	53677885	3	1	9	1	0	0	0	0	1	0	0	0	5295	652	23	1	3183	1	ESPL1	12	53677885	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1800	53677885	80174010	13202	21353											
ESPL1	9700	broad.mit.edu	37	chr12	53682997	53682997	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgtgcctgggccaccGggatccttatgccactgctt	12	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53682997	C	C	53682997	3	2	9	1	0	0	0	0	1	0	0	0	5295	1116	39	4	4910	4	ESPL1	12	53682997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5112	53682997	80168898	13203	21354											
C12orf10	60314	broad.mit.edu	37	chr12	53696884	53696884	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccaagctgagcagtgcGggactcatctatctgcactt	10	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53696884	T	T	53696884	2	4	9	1	0	0	0	0	0	0	0	1	1687	1103	39	1		1	C12orf10	12	53696884	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13887	53696884	80155011	13204	21355											
C12orf10	60314	broad.mit.edu	37	chr12	53700782	53700782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagccatggcggggtcttcGggacgaggccctggaccagg	18	11	1	1	rs142952424		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53700782	T	T	53700782	3	4	9	1	0	0	0	0	1	0	0	0	1687	1116	39	1	1006	1	C12orf10	12	53700782	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3898	53700782	80151113	13205	21356											
AAAS	8086	broad.mit.edu	37	chr12	53702500	53702500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatactgaagtgttgccCtaactcaccacaacgttctg	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53702500	A	A	53702500	1	1	9	0	1	0	0	0	0	0	0	0	8	696	24	2		2	AAAS	12	53702500	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1718	53702500	80149395	13206	21357											
AAAS	8086	broad.mit.edu	37	chr12	53702552	53702552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaaatcagtggctctccCaatacagtgaacagcagtcg	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53702552	A	A	53702552	3	1	9	1	0	0	0	0	1	0	0	0	8	593	21	2	620	2	AAAS	12	53702552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52	53702552	80149343	13207	21358											
SP7	121340	broad.mit.edu	37	chr12	53723125	53723125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagagttgttgagtccCgcagagggctagagccacca	13	12	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53723125	A	A	53723125	3	1	9	1	0	0	0	0	1	0	0	0	15083	652	23	1	1198	1	SP7	12	53723125	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20573	53723125	80128770	13208	21359											
MAP3K12	7786	broad.mit.edu	37	chr12	53877697	53877697	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaagcacgggaactcacctGagctcctccctcctcctcat	6	19	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53877697	T	T	53877697	2	4	9	1	0	0	0	0	0	0	0	1	9338	1277	45	3		3	MAP3K12	12	53877697	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	154572	53877697	79974198	13209	21360											
MAP3K12	7786	broad.mit.edu	37	chr12	53877794	53877794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcagttttacttcttccCgccactctgcctatgggttg	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53877794	A	A	53877794	3	1	9	1	0	0	0	0	1	0	0	0	9338	652	23	1	1447	1	MAP3K12	12	53877794	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	97	53877794	79974101	13210	21361											
MAP3K12	7786	broad.mit.edu	37	chr12	53879168	53879168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatccaggctactgtccCtgcaaaggacatcttggtgc	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53879168	A	A	53879168	3	1	9	1	0	0	0	0	1	0	0	0	9338	681	24	2	1805	2	MAP3K12	12	53879168	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1374	53879168	79972727	13211	21362											
NPFF	8620	broad.mit.edu	37	chr12	53900705	53900705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatttgtcctcaggtcccCgcagtctcccttctctagcc	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53900705	A	A	53900705	1	1	9	0	1	0	0	0	0	0	0	0	10671	667	23	1		1	NPFF	12	53900705	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21537	53900705	79951190	13212	21363											
CALCOCO1	57658	broad.mit.edu	37	chr12	54115201	54115201	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagagggggctggagtgcGggggtcatggaagggagagg	25	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54115201	T	T	54115201	1	4	9	0	1	0	0	0	0	0	0	0	2603	1131	39	1		1	CALCOCO1	12	54115201	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	214496	54115201	79736694	13213	21364											
CALCOCO1	57658	broad.mit.edu	37	chr12	54115390	54115390	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatctccccatgggaccGggaaatcccctgaaattaag	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54115390	T	T	54115390	2	4	9	1	0	0	0	0	0	0	0	1	2603	1115	39	1		1	CALCOCO1	12	54115390	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	189	54115390	79736505	13214	21365											
HOXC13	3229	broad.mit.edu	37	chr12	54333156	54333156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcgataaatacccggagCcgtcgggcgccctgcccggt	15	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54333156	A	A	54333156	3	1	9	1	0	0	0	0	1	0	0	0	7379	739	26	3	468	3	HOXC13	12	54333156	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	217766	54333156	79518739	13215	21366											
HOXC12	3228	broad.mit.edu	37	chr12	54350325	54350325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaagacttctgttgaGggagcaagctctctccttct	9	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54350325	T	T	54350325	3	4	9	1	0	0	0	0	1	0	0	0	7378	1000	35	2	830	2	HOXC12	12	54350325	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17169	54350325	79501570	13216	21367											
HOXC11	3227	broad.mit.edu	37	chr12	54367427	54367427	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgccccgcacgcaaccccCgccggcttctactcctcagt	8	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54367427	A	A	54367427	2	1	9	1	0	0	0	0	0	0	0	1	7377	639	23	1		1	HOXC11	12	54367427	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17102	54367427	79484468	13217	21368											
HOXC5	3222	broad.mit.edu	37	chr12	54428082	54428082	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacggacggcaagcggtccCgaaccagttacacgcgctac	12	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54428082	A	A	54428082	2	1	9	1	0	0	0	0	0	0	0	1	7381	644	23	1		1	HOXC5	12	54428082	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60655	54428082	79423813	13218	21369											
CBX5	23468	broad.mit.edu	37	chr12	54651444	54651444	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttcccatgtcgcacacCgttccacctgaaagactaag	6	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54651444	A	A	54651444	1	1	9	0	1	0	0	0	0	0	0	0	2747	667	23	1		1	CBX5	12	54651444	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	223362	54651444	79200451	13219	21370											
NFE2	4778	broad.mit.edu	37	chr12	54686267	54686267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgttgcctgattcatccCgaaggtgctggaaaatgtca	11	9	2	1	rs4348947		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54686267	A	A	54686267	3	1	9	1	0	0	0	0	1	0	0	0	10461	652	23	1	112	1	NFE2	12	54686267	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34823	54686267	79165628	13220	21371											
COPZ1	22818	broad.mit.edu	37	chr12	54730971	54730971	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctaagtcacccaatctccCacaaaacaatctgcctatac	3	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54730971	A	A	54730971	1	1	9	0	1	0	0	0	0	0	0	0	3773	609	21	2		2	COPZ1	12	54730971	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44704	54730971	79120924	13221	21372											
COPZ1	22818	broad.mit.edu	37	chr12	54741865	54741865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgtttctttgcatcccCgcatctattcacaaacaccc	4	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54741865	A	A	54741865	1	1	9	0	1	0	0	0	0	0	0	0	3773	667	23	1		1	COPZ1	12	54741865	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10894	54741865	79110030	13222	21373											
COPZ1	22818	broad.mit.edu	37	chr12	54743403	54743403	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtatctctgtgccataGggtgaagatgtcccccttac	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54743403	T	T	54743403	5	4	9	1	0	0	0	0	0	0	1	0	3773	1014	35	2	477	2	COPZ1	12	54743403	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	1538	54743403	79108492	13223	21374											
GPR84	53831	broad.mit.edu	37	chr12	54756504	54756504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggagccatatgcttggcGgaattggcggttcatggctg	15	7	1	0	rs142475586		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54756504	T	T	54756504	3	4	9	1	0	0	0	0	1	0	0	0	6779	1116	39	1	62	1	GPR84	12	54756504	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13101	54756504	79095391	13224	21375											
GPR84	53831	broad.mit.edu	37	chr12	54756837	54756837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgatgagtccccttccaGggtctgggtggtggcagcac	14	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54756837	T	T	54756837	3	4	9	1	0	0	0	0	1	0	0	0	6779	991	35	2	395	2	GPR84	12	54756837	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	333	54756837	79095058	13225	21376											
ITGA5	3678	broad.mit.edu	37	chr12	54792481	54792481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaaatggctggtgctccCgctgtgggtaggggaaagtt	17	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54792481	A	A	54792481	3	1	9	1	0	0	0	0	1	0	0	0	7949	666	23	1	318	1	ITGA5	12	54792481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35644	54792481	79059414	13226	21377											
ITGA5	3678	broad.mit.edu	37	chr12	54795370	54795370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttgcctggcactgaccCgttcagggtgacctgggcct	12	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54795370	A	A	54795370	3	1	9	1	0	0	0	0	1	0	0	0	7949	666	23	1	795	1	ITGA5	12	54795370	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2889	54795370	79056525	13227	21378											
ITGA5	3678	broad.mit.edu	37	chr12	54797006	54797006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttgctctgataatgtaGggctggcctgaggccgtggc	15	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54797006	T	T	54797006	3	4	9	1	0	0	0	0	1	0	0	0	7949	991	35	2	1322	2	ITGA5	12	54797006	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1636	54797006	79054889	13228	21379											
ITGA5	3678	broad.mit.edu	37	chr12	54798234	54798234	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtataccacagccttgtcCacaccaaaggaccccacaat	5	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54798234	A	A	54798234	2	1	9	1	0	0	0	0	0	0	0	1	7949	581	21	2		2	ITGA5	12	54798234	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1228	54798234	79053661	13229	21380											
NCKAP1L	3071	broad.mit.edu	37	chr12	54902249	54902249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcattttacttctgtcacGgattgaagatcggcggatac	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54902249	T	T	54902249	3	4	9	1	0	0	0	0	1	0	0	0	10317	1116	39	1	458	1	NCKAP1L	12	54902249	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	104015	54902249	78949646	13230	21381											
NCKAP1L	3071	broad.mit.edu	37	chr12	54903674	54903674	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgcatttcctctttgtcCgaagaaaccagggggctgag	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54903674	A	A	54903674	2	1	9	1	0	0	0	0	0	0	0	1	10317	644	23	1		1	NCKAP1L	12	54903674	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1425	54903674	78948221	13231	21382											
NCKAP1L	3071	broad.mit.edu	37	chr12	54912404	54912404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctagggaacctgtgccCacttgacagtaactgcagct	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54912404	A	A	54912404	1	1	9	0	1	0	0	0	0	0	0	0	10317	609	21	2		2	NCKAP1L	12	54912404	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8730	54912404	78939491	13232	21383											
NCKAP1L	3071	broad.mit.edu	37	chr12	54917096	54917096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaataacagacaacaatGgacaacaacctttttataac	3	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54917096	T	T	54917096	1	4	9	0	1	0	0	0	0	0	0	0	10317	1363	47	2		2	NCKAP1L	12	54917096	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4692	54917096	78934799	13233	21384											
NCKAP1L	3071	broad.mit.edu	37	chr12	54925050	54925050	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taactctgttccagagatgcGggccttggcagaactcctgg	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54925050	C	C	54925050	3	2	9	1	0	0	0	0	1	0	0	0	10317	1116	39	4	2603	4	NCKAP1L	12	54925050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7954	54925050	78926845	13234	21385											
PDE1B	5153	broad.mit.edu	37	chr12	54964145	54964145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcagccgcttcaaggttGggcagcatcctacctctacc	8	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54964145	T	T	54964145	1	4	9	0	1	0	0	0	0	0	0	0	11728	1363	47	2		2	PDE1B	12	54964145	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39095	54964145	78887750	13235	21386											
PDE1B	5153	broad.mit.edu	37	chr12	54966320	54966320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagaaagttgttgatctcGgtccgtaatcaccaccattc	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54966320	T	T	54966320	1	4	9	0	1	0	0	0	0	0	0	0	11728	1131	39	1		1	PDE1B	12	54966320	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2175	54966320	78885575	13236	21387											
PDE1B	5153	broad.mit.edu	37	chr12	54966414	54966414	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttttgatgagtttcctGgatgccttggagacaggcta	13	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54966414	T	T	54966414	2	4	9	1	0	0	0	0	0	0	0	1	11728	1335	47	2		2	PDE1B	12	54966414	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	94	54966414	78885481	13237	21388											
PDE1B	5153	broad.mit.edu	37	chr12	54968916	54968916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccctgtctctactgctcCatgctgctgacatcagccac	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54968916	A	A	54968916	3	1	9	1	0	0	0	0	1	0	0	0	11728	594	21	2	1194	2	PDE1B	12	54968916	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2502	54968916	78882979	13238	21389											
PPP1R1A	5502	broad.mit.edu	37	chr12	54974718	54974718	+	Intron	SNP	G	T	T													tgacctggcagcccagccctGgggtcttaccgagttggctc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54974718	T	T	54974718	1	4	9	0	1	0	0	0	0	0	0	0	12468	1363	47	2		2	PPP1R1A	12	54974718	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5802	54974718	78877177	13239	21390	143	2									
PPP1R1A	5502	broad.mit.edu	37	chr12	54974728	54974729	+	Missense_Mutation	DNP	CG	AT	AT													gcccagccctggggtcttacCgagttggctcccttggaatc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	54974729	AT	AT	54974728	3	1	9	1	0	0	0	0	1	0	0	0	12468	666	23	1	13	1	PPP1R1A	12	54974728	Missense_Mutation	DNP	CG	TCGA-05-4396-01A-21D-1855-08	10	54974728	78877167	13240	21391	143	2									
LACRT	90070	broad.mit.edu	37	chr12	55026117	55026117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgttgtggttgtctctGggggtgaagctggttctgct	18	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55026117	T	T	55026117	3	4	9	1	0	0	0	0	1	0	0	0	8668	1348	47	2	267	2	LACRT	12	55026117	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51389	55026117	78825778	13241	21392											
NEUROD4	58158	broad.mit.edu	37	chr12	55421094	55421094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcaagtctaagctcaGggcatgtgcattcaactcct	7	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55421094	T	T	55421094	3	4	9	1	0	0	0	0	1	0	0	0	10445	1000	35	2	873	2	NEUROD4	12	55421094	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	394977	55421094	78430801	13242	21393											
OR9K2	441639	broad.mit.edu	37	chr12	55524142	55524142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatctttttgcgcttctcGggctgttgaccacttttact	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55524142	T	T	55524142	3	4	9	1	0	0	0	0	1	0	0	0	11348	1116	39	1	592	1	OR9K2	12	55524142	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	103048	55524142	78327753	13243	21394											
OR9K2	441639	broad.mit.edu	37	chr12	55524323	55524323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagatacattctactgaGggacataagaaggccttctc	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55524323	T	T	55524323	3	4	9	1	0	0	0	0	1	0	0	0	11348	991	35	2	773	2	OR9K2	12	55524323	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	181	55524323	78327572	13244	21395											
OR6C3	254786	broad.mit.edu	37	chr12	55725617	55725617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacctgactatcatcaccCtaacctttgtggactcccat	5	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55725617	A	A	55725617	3	1	9	1	0	0	0	0	1	0	0	0	11286	680	24	2	135	2	OR6C3	12	55725617	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	201294	55725617	78126278	13245	21396											
OR6C75	390323	broad.mit.edu	37	chr12	55759174	55759174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaccatttcttataatGggtgtgtggctcagctattt	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55759174	T	T	55759174	3	4	9	1	0	0	0	0	1	0	0	0	11293	1348	47	2	282	2	OR6C75	12	55759174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33557	55759174	78092721	13246	21397											
OR6C65	403282	broad.mit.edu	37	chr12	55794627	55794627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattttttttaattcttttGggatcaacagaattttttct	5	4	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55794627	T	T	55794627	3	4	9	1	0	0	0	0	1	0	0	0	11289	1339	47	2	317	2	OR6C65	12	55794627	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35453	55794627	78057268	13247	21398											
OR6C70	390327	broad.mit.edu	37	chr12	55863431	55863431	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttgaagcacagaaatcCaagttaagacctaaaatcag	6	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55863431	A	A	55863431	3	1	9	1	0	0	0	0	1	0	0	0	11291	593	21	2	448	2	OR6C70	12	55863431	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68804	55863431	77988464	13248	21399											
GDF11	10220	broad.mit.edu	37	chr12	56143376	56143376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagcactcaagcgagtccCgctgctgccgatatcccctc	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56143376	A	A	56143376	3	1	9	1	0	0	0	0	1	0	0	0	6376	652	23	1	944	1	GDF11	12	56143376	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	279945	56143376	77708519	13249	21400											
ORMDL2	29095	broad.mit.edu	37	chr12	56213149	56213149	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtatgtcttccttcatacGgtgaaagggacaccctttga	9	10	2	2	rs140195947		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56213149	T	T	56213149	2	4	9	1	0	0	0	0	0	0	0	1	11364	1103	39	1		1	ORMDL2	12	56213149	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	69773	56213149	77638746	13250	21401											
MMP19	4327	broad.mit.edu	37	chr12	56230980	56230980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggatagcctttctctactCgaagctgctggttgaggcgc	13	10	1	1	rs150724096	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56230980	A	A	56230980	3	1	9	1	0	0	0	0	1	0	0	0	9750	884	31	3	163	3	MMP19	12	56230980	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17831	56230980	77620915	13251	21402											
MMP19	4327	broad.mit.edu	37	chr12	56231134	56231134	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagtcagttcgggctagctCgtcccactgccagtacccgg	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56231134	A	A	56231134	4	1	9	1	0	0	0	0	0	1	0	0	9750	893	31	3	317	3	MMP19	12	56231134	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154	56231134	77620761	13252	21403											
MMP19	4327	broad.mit.edu	37	chr12	56231727	56231727	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacactcggaacaaggggccCggtcctgaatctgatacagt	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56231727	A	A	56231727	2	1	9	1	0	0	0	0	0	0	0	1	9750	639	23	1		1	MMP19	12	56231727	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	593	56231727	77620168	13253	21404											
WIBG	84305	broad.mit.edu	37	chr12	56295762	56295762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttccccagcctggatcCgctgctgcagctcttccacc	8	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56295762	A	A	56295762	3	1	9	1	0	0	0	0	1	0	0	0	17492	652	23	1	109	1	WIBG	12	56295762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64035	56295762	77556133	13254	21405											
DGKA	1606	broad.mit.edu	37	chr12	56347147	56347147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatagcaccacaaaaaccCttcccatgcaaattgacgga	5	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56347147	A	A	56347147	3	1	9	1	0	0	0	0	1	0	0	0	4505	681	24	2	2163	2	DGKA	12	56347147	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51385	56347147	77504748	13255	21406											
CDK2	1017	broad.mit.edu	37	chr12	56362611	56362611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttctgccattctcatcGggtcctccaccgagacctta	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56362611	T	T	56362611	3	4	9	1	0	0	0	0	1	0	0	0	3166	1116	39	1	379	1	CDK2	12	56362611	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15464	56362611	77489284	13256	21407											
CDK2	1017	broad.mit.edu	37	chr12	56364838	56364838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattttcaggtgactcgccGggccctattccctggagatt	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56364838	T	T	56364838	3	4	9	1	0	0	0	0	1	0	0	0	3166	1116	39	1	621	1	CDK2	12	56364838	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2227	56364838	77487057	13257	21408											
CDK2	1017	broad.mit.edu	37	chr12	56364889	56364889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctcttccggatctttcGgactctggggaccccagatg	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56364889	T	T	56364889	3	4	9	1	0	0	0	0	1	0	0	0	3166	1116	39	1	672	1	CDK2	12	56364889	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	56364889	77487006	13258	21409											
CDK2	1017	broad.mit.edu	37	chr12	56365333	56365333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactacgaccctaacaagcGgatttcggccaaggcagccc	10	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56365333	T	T	56365333	3	4	9	1	0	0	0	0	1	0	0	0	3166	1116	39	1	847	1	CDK2	12	56365333	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	444	56365333	77486562	13259	21410											
RAB5B	5869	broad.mit.edu	37	chr12	56384600	56384600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtatgaagtaaggtggccCgtggagttcctctctaacac	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56384600	A	A	56384600	1	1	9	0	1	0	0	0	0	0	0	0	13057	667	23	1		1	RAB5B	12	56384600	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19267	56384600	77467295	13260	21411											
SUOX	6821	broad.mit.edu	37	chr12	56396347	56396347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaagtcaatcccctcaaGgatctgcattcaggcctgct	7	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56396347	T	T	56396347	3	4	9	1	0	0	0	0	1	0	0	0	15513	1000	35	2	77	2	SUOX	12	56396347	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11747	56396347	77455548	13261	21412											
IKZF4	64375	broad.mit.edu	37	chr12	56426576	56426576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgactccagtatctccCacactgagggatgaagtctg	12	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56426576	A	A	56426576	1	1	9	0	1	0	0	0	0	0	0	0	7687	609	21	2		2	IKZF4	12	56426576	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30229	56426576	77425319	13262	21413											
ERBB3	2065	broad.mit.edu	37	chr12	56490382	56490382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcttaaagtgcttggctcGggtgtctttggaactgtgca	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56490382	T	T	56490382	2	4	9	1	0	0	0	0	0	0	0	1	5250	1103	39	1		1	ERBB3	12	56490382	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	63806	56490382	77361513	13263	21414											
ERBB3	2065	broad.mit.edu	37	chr12	56490417	56490417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcacaaagtgagtgaccCataggaattctggagaggtg	14	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56490417	A	A	56490417	1	1	9	0	1	0	0	0	0	0	0	0	5250	609	21	2		2	ERBB3	12	56490417	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	56490417	77361478	13264	21415											
ERBB3	2065	broad.mit.edu	37	chr12	56491620	56491620	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatagaaacctggctgccCgaaacgtgctactcaagtca	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56491620	A	A	56491620	2	1	9	1	0	0	0	0	0	0	0	1	5250	644	23	1		1	ERBB3	12	56491620	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1203	56491620	77360275	13265	21416											
PA2G4	5036	broad.mit.edu	37	chr12	56500978	56500979	+	Missense_Mutation	DNP	GG	TT	TT													tcttgcctttcagtgaccttGgggtccatgtggatggcttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	56500979	TT	TT	56500978	3	4	9	1	0	0	0	0	1	0	0	0	11455	1348	47	2	345	2	PA2G4	12	56500978	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	9358	56500978	77350917	13266	21417											
PA2G4	5036	broad.mit.edu	37	chr12	56505370	56505370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgatccctctttctccCactgtgttaagttgtagtga	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56505370	A	A	56505370	1	1	9	0	1	0	0	0	0	0	0	0	11455	609	21	2		2	PA2G4	12	56505370	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4392	56505370	77346525	13267	21418											
RPL41	6171	broad.mit.edu	37	chr12	56510655	56510655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggagacgaaggcaagtcCgccatacctcctgaactact	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56510655	A	A	56510655	1	1	9	0	1	0	0	0	0	0	0	0	13707	667	23	1		1	RPL41	12	56510655	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5285	56510655	77341240	13268	21419											
ESYT1	23344	broad.mit.edu	37	chr12	56525296	56525296	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgggtgatactggagccactCattggggaccttcccttcgt	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56525296	A	A	56525296	2	1	9	1	0	0	0	0	0	0	0	1	5306	813	29	3		3	ESYT1	12	56525296	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14641	56525296	77326599	13269	21420											
ESYT1	23344	broad.mit.edu	37	chr12	56532580	56532580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaccaagcacctcagccCttatgctactctcactgtgg	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56532580	A	A	56532580	3	1	9	1	0	0	0	0	1	0	0	0	5306	681	24	2	2582	2	ESYT1	12	56532580	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7284	56532580	77319315	13270	21421											
ESYT1	23344	broad.mit.edu	37	chr12	56536073	56536073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttgccccacaggttcGgggtgagggcactggcgtgc	16	12	0	1	rs144008887		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56536073	T	T	56536073	3	4	9	1	0	0	0	0	1	0	0	0	5306	1116	39	1	2725	1	ESYT1	12	56536073	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3493	56536073	77315822	13271	21422											
MYL6B	140465	broad.mit.edu	37	chr12	56548542	56548542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttggttgggaggagtgcGggagagggattgaataaact	18	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56548542	T	T	56548542	1	4	9	0	1	0	0	0	0	0	0	0	10146	1131	39	1		1	MYL6B	12	56548542	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12469	56548542	77303353	13272	21423											
MYL6B	140465	broad.mit.edu	37	chr12	56548656	56548656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctaaggccactgtccCatccccaatcccctggtcag	6	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56548656	A	A	56548656	1	1	9	0	1	0	0	0	0	0	0	0	10146	609	21	2		2	MYL6B	12	56548656	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	56548656	77303239	13273	21424											
MYL6B	140465	broad.mit.edu	37	chr12	56548823	56548823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagtgtctacactgaccCttccttatactttagagttc	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56548823	A	A	56548823	1	1	9	0	1	0	0	0	0	0	0	0	10146	696	24	2		2	MYL6B	12	56548823	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	167	56548823	77303072	13274	21425											
MYL6	4637	broad.mit.edu	37	chr12	56552298	56552298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagggaatctgaggaccCgaaaggttggaggtggggtt	18	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56552298	A	A	56552298	1	1	9	0	1	0	0	0	0	0	0	0	10145	667	23	1		1	MYL6	12	56552298	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3475	56552298	77299597	13275	21426											
SMARCC2	6601	broad.mit.edu	37	chr12	56561857	56561857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcactgcttctcgctccCggtccatgatagtctccagc	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56561857	A	A	56561857	3	1	9	1	0	0	0	0	1	0	0	0	14890	652	23	1	916	1	SMARCC2	12	56561857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9559	56561857	77290038	13276	21427											
SMARCC2	6601	broad.mit.edu	37	chr12	56574719	56574719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaaggagagtcaagacGgggagtgggggtggatccca	19	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56574719	T	T	56574719	1	4	9	0	1	0	0	0	0	0	0	0	14890	1131	39	1		1	SMARCC2	12	56574719	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12862	56574719	77277176	13277	21428											
SMARCC2	6601	broad.mit.edu	37	chr12	56575422	56575422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaatgtcagcctacaatcCccactgaagatttgttctga	6	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56575422	A	A	56575422	1	1	9	0	1	0	0	0	0	0	0	0	14890	638	22	2		2	SMARCC2	12	56575422	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	703	56575422	77276473	13278	21429											
SMARCC2	6601	broad.mit.edu	37	chr12	56575606	56575606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtcggtgtccaggatcCactttgcatgaacctaaagt	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56575606	A	A	56575606	3	1	9	1	0	0	0	0	1	0	0	0	14890	595	21	2	3099	2	SMARCC2	12	56575606	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	184	56575606	77276289	13279	21430											
SMARCC2	6601	broad.mit.edu	37	chr12	56579998	56579998	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggcacaaggagcctccCgctttgaaatctaggaaaca	10	10	1	1	rs146067473		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56579998	A	A	56579998	2	1	9	1	0	0	0	0	0	0	0	1	14890	639	23	1		1	SMARCC2	12	56579998	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4392	56579998	77271897	13280	21431											
SLC39A5	283375	broad.mit.edu	37	chr12	56629299	56629299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcaaggggatgttgttGggtataggggcttccagagt	16	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56629299	T	T	56629299	1	4	9	0	1	0	0	0	0	0	0	0	14735	1363	47	2		2	SLC39A5	12	56629299	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49301	56629299	77222596	13281	21432											
SLC39A5	283375	broad.mit.edu	37	chr12	56630252	56630252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatggcagtgggatggccCttcagcccctacaggcagct	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56630252	A	A	56630252	3	1	9	1	0	0	0	0	1	0	0	0	14735	681	24	2	1040	2	SLC39A5	12	56630252	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	953	56630252	77221643	13282	21433											
CS	1431	broad.mit.edu	37	chr12	56668821	56668821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagaggccctgccagccCgttcatggctgctgcaaagg	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56668821	A	A	56668821	3	1	9	1	0	0	0	0	1	0	0	0	3956	652	23	1	533	1	CS	12	56668821	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38569	56668821	77183074	13283	21434											
CS	1431	broad.mit.edu	37	chr12	56679663	56679663	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttgttgaagcacattacaGagctacttttcccagccaaa	6	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56679663	T	T	56679663	1	4	9	0	1	0	0	0	0	0	0	0	3956	957	33	3		3	CS	12	56679663	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10842	56679663	77172232	13284	21435											
PAN2	9924	broad.mit.edu	37	chr12	56713245	56713245	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtcaccaggctttataccCgagtattgagtcaagtaatc	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56713245	G	G	56713245	2	3	9	1	0	0	0	0	0	0	0	1	11508	639	23	4		4	PAN2	12	56713245	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33582	56713245	77138650	13285	21436											
PAN2	9924	broad.mit.edu	37	chr12	56721088	56721088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggatgagtactccttcGggttctagctctcctttgct	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56721088	T	T	56721088	1	4	9	0	1	0	0	0	0	0	0	0	11508	1131	39	1		1	PAN2	12	56721088	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7843	56721088	77130807	13286	21437											
PAN2	9924	broad.mit.edu	37	chr12	56726504	56726504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatcactacaactcctcGgtactggctatctgcaaagc	6	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56726504	T	T	56726504	1	4	9	0	1	0	0	0	0	0	0	0	11508	1131	39	1		1	PAN2	12	56726504	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5416	56726504	77125391	13287	21438											
PAN2	9924	broad.mit.edu	37	chr12	56726599	56726599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggtacagttcttacccCgtggctccccacccacagca	9	16	1	0	rs145797450		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56726599	A	A	56726599	3	1	9	1	0	0	0	0	1	0	0	0	11508	652	23	1	3428	1	PAN2	12	56726599	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	56726599	77125296	13288	21439											
STAT2	6773	broad.mit.edu	37	chr12	56743231	56743231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagctcctgcttcagaccCtggtaggtatatttgaccgt	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56743231	A	A	56743231	3	1	9	1	0	0	0	0	1	0	0	0	15383	680	24	2	1275	2	STAT2	12	56743231	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16632	56743231	77108664	13289	21440											
STAT2	6773	broad.mit.edu	37	chr12	56749214	56749214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaaccctaactcctacCacatctactaacctccatca	1	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56749214	A	A	56749214	1	1	9	0	1	0	0	0	0	0	0	0	15383	609	21	2		2	STAT2	12	56749214	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5983	56749214	77102681	13290	21441											
TIMELESS	8914	broad.mit.edu	37	chr12	56811937	56811937	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctggggatgccaggccCgctttcttcttgtgggctag	13	13	3	0	rs61937716	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56811937	A	A	56811937	2	1	9	1	0	0	0	0	0	0	0	1	16027	639	23	1		1	TIMELESS	12	56811937	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62723	56811937	77039958	13291	21442											
TIMELESS	8914	broad.mit.edu	37	chr12	56815566	56815566	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccaactcctgatccccCgtccacagtacaatatgggt	7	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56815566	A	A	56815566	2	1	9	1	0	0	0	0	0	0	0	1	16027	639	23	1		1	TIMELESS	12	56815566	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3629	56815566	77036329	13292	21443											
MIP	4284	broad.mit.edu	37	chr12	56848038	56848038	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctcagccaaccattacCgtgttgagtgctaggtttcc	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56848038	A	A	56848038	2	1	9	1	0	0	0	0	0	0	0	1	9684	666	23	1		1	MIP	12	56848038	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32472	56848038	77003857	13293	21444											
SPRYD4	283377	broad.mit.edu	37	chr12	56862344	56862344	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggctgtgtctgtaagcGggaggcgtgcccggttcatc	16	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56862344	T	T	56862344	1	4	9	0	1	0	0	0	0	0	0	0	15228	1131	39	1		1	SPRYD4	12	56862344	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	14306	56862344	76989551	13294	21445											
GLS2	27165	broad.mit.edu	37	chr12	56868909	56868909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatctgaagcaaacaccCaatttagtacttgaagttgg	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56868909	A	A	56868909	1	1	9	0	1	0	0	0	0	0	0	0	6528	609	21	2		2	GLS2	12	56868909	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6565	56868909	76982986	13295	21446											
GLS2	27165	broad.mit.edu	37	chr12	56872743	56872743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccattgcactccagcccGggtgacagagcaaaactctg	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56872743	T	T	56872743	1	4	9	0	1	0	0	0	0	0	0	0	6528	1131	39	1		1	GLS2	12	56872743	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3834	56872743	76979152	13296	21447											
GLS2	27165	broad.mit.edu	37	chr12	56872887	56872887	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgcgatccacatggccCgtgaactcctcaaaatcagg	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56872887	A	A	56872887	2	1	9	1	0	0	0	0	0	0	0	1	6528	639	23	1		1	GLS2	12	56872887	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	144	56872887	76979008	13297	21448											
BAZ2A	11176	broad.mit.edu	37	chr12	56995525	56995525	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgggtctagttttccCggactgctatcaggtgtgag	15	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56995525	A	A	56995525	2	1	9	1	0	0	0	0	0	0	0	1	1336	639	23	1		1	BAZ2A	12	56995525	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	122638	56995525	76856370	13298	21449											
BAZ2A	11176	broad.mit.edu	37	chr12	56998569	56998569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcagacaccttctccccCaagatctttagggactgtgt	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56998569	A	A	56998569	3	1	9	1	0	0	0	0	1	0	0	0	1336	593	21	2	3008	2	BAZ2A	12	56998569	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3044	56998569	76853326	13299	21450											
ATP5B	506	broad.mit.edu	37	chr12	57032831	57032831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattacatatattgcttgacGgttgttggaatgggaccaca	10	6	0	1	rs138345771	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57032831	T	T	57032831	1	4	9	0	1	0	0	0	0	0	0	0	1152	1131	39	1		1	ATP5B	12	57032831	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34262	57032831	76819064	13300	21451											
PTGES3	10728	broad.mit.edu	37	chr12	57065611	57065611	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacataaaattgatctgtcCgttcttttatgcttggaatc	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57065611	A	A	57065611	2	1	9	1	0	0	0	0	0	0	0	1	12854	639	23	1		1	PTGES3	12	57065611	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32780	57065611	76786284	13301	21452											
NACA	4666	broad.mit.edu	37	chr12	57111833	57111833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggggtagctagacctcCttttggggaaggaggagttg	19	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57111833	A	A	57111833	1	1	9	0	1	0	0	0	0	0	0	0	10227	690	24	2		2	NACA	12	57111833	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46222	57111833	76740062	13302	21453											
MYO1A	4640	broad.mit.edu	37	chr12	57423308	57423308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaatgacaattttggcctGggacttcttggtgtctgtga	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57423308	T	T	57423308	3	4	9	1	0	0	0	0	1	0	0	0	10162	1357	47	2	355	2	MYO1A	12	57423308	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	311475	57423308	76428587	13303	21454											
MYO1A	4640	broad.mit.edu	37	chr12	57424072	57424072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatctctacctgcttcGgggacagctgatcccggaac	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57424072	T	T	57424072	3	4	9	1	0	0	0	0	1	0	0	0	10162	1116	39	1	638	1	MYO1A	12	57424072	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	764	57424072	76427823	13304	21455											
MYO1A	4640	broad.mit.edu	37	chr12	57430712	57430712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaacagagtgggactttGgggatgaccgtaccatgttt	14	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57430712	T	T	57430712	1	4	9	0	1	0	0	0	0	0	0	0	10162	1363	47	2		2	MYO1A	12	57430712	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6640	57430712	76421183	13305	21456											
MYO1A	4640	broad.mit.edu	37	chr12	57430736	57430736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccgtaccatgtttcccCgaaaccaagaggagatgagg	11	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57430736	A	A	57430736	3	1	9	1	0	0	0	0	1	0	0	0	10162	652	23	1	972	1	MYO1A	12	57430736	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	57430736	76421159	13306	21457											
MYO1A	4640	broad.mit.edu	37	chr12	57440845	57440845	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggggagacatttactcacAaatcgggaggaattgttgtt	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57440845	T	T	57440845	3	4	9	1	0	0	0	0	1	0	0	0	10162	144	5	5	2746	5	MYO1A	12	57440845	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	10109	57440845	76411050	13307	21458											
NAB2	4665	broad.mit.edu	37	chr12	57485187	57485187	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccagtgcctgctgttccCgtctccagcatcccgctctt	7	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57485187	A	A	57485187	2	1	9	1	0	0	0	0	0	0	0	1	10226	639	23	1		1	NAB2	12	57485187	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44342	57485187	76366708	13308	21459											
STAT6	6778	broad.mit.edu	37	chr12	57492806	57492806	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccacactcacctttccacGgtcatcttgatggtagctgg	8	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57492806	T	T	57492806	2	4	9	1	0	0	0	0	0	0	0	1	15388	1103	39	1		1	STAT6	12	57492806	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7619	57492806	76359089	13309	21460											
LRP1	4035	broad.mit.edu	37	chr12	57554822	57554822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctaagcctggacatccCggctgggcgcctctactggg	15	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57554822	A	A	57554822	3	1	9	1	0	0	0	0	1	0	0	0	9038	652	23	1	2176	1	LRP1	12	57554822	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62016	57554822	76297073	13310	21461											
LRP1	4035	broad.mit.edu	37	chr12	57567566	57567566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacctgtccctcagctcGgtgcatcagcaaagcgtggg	13	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57567566	T	T	57567566	3	4	9	1	0	0	0	0	1	0	0	0	9038	1116	39	1	3436	1	LRP1	12	57567566	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12744	57567566	76284329	13311	21462											
LRP1	4035	broad.mit.edu	37	chr12	57588839	57588839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcagtggctgtgtgacGgcagcgatgactgtggggat	17	8	0	2	rs149415384		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57588839	T	T	57588839	3	4	9	1	0	0	0	0	1	0	0	0	9038	1116	39	1	8465	1	LRP1	12	57588839	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21273	57588839	76263056	13312	21463											
LRP1	4035	broad.mit.edu	37	chr12	57595620	57595620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattcgggccgctgcatccCagcgcgttggaagtgtgacg	16	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57595620	A	A	57595620	3	1	9	1	0	0	0	0	1	0	0	0	9038	594	21	2	10792	2	LRP1	12	57595620	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6781	57595620	76256275	13313	21464											
LRP1	4035	broad.mit.edu	37	chr12	57599258	57599258	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccgtgcccggccagccCggatgccaaggtaggaaagc	13	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57599258	A	A	57599258	2	1	9	1	0	0	0	0	0	0	0	1	9038	639	23	1		1	LRP1	12	57599258	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3638	57599258	76252637	13314	21465											
SHMT2	6472	broad.mit.edu	37	chr12	57628092	57628092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggccaacctcaggcaacGggtggagcagtttgccaggg	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57628092	T	T	57628092	3	4	9	1	0	0	0	0	1	0	0	0	14399	1116	39	1	1509	1	SHMT2	12	57628092	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28834	57628092	76223803	13315	21466											
STAC3	246329	broad.mit.edu	37	chr12	57641965	57641965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggggaactataggccCgatggaaaccaggtggctgt	16	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57641965	A	A	57641965	3	1	9	1	0	0	0	0	1	0	0	0	15359	652	23	1	677	1	STAC3	12	57641965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13873	57641965	76209930	13316	21467											
STAC3	246329	broad.mit.edu	37	chr12	57642347	57642347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttttgtatttagagacGgggtttcactgtgttagcca	10	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57642347	T	T	57642347	1	4	9	0	1	0	0	0	0	0	0	0	15359	1131	39	1		1	STAC3	12	57642347	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	382	57642347	76209548	13317	21468											
STAC3	246329	broad.mit.edu	37	chr12	57642507	57642507	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgatcttgccgaagcatctCtgcatttccacataggactg	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57642507	A	A	57642507	3	1	9	1	0	0	0	0	1	0	0	0	15359	912	32	3	716	3	STAC3	12	57642507	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160	57642507	76209388	13318	21469											
STAC3	246329	broad.mit.edu	37	chr12	57642522	57642522	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctctgcatttccacataGgactgacagtgttcatggat	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57642522	T	T	57642522	2	4	9	1	0	0	0	0	0	0	0	1	15359	987	35	2		2	STAC3	12	57642522	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	57642522	76209373	13319	21470											
STAC3	246329	broad.mit.edu	37	chr12	57642572	57642572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagttcttacagcgaagccCaaacttgttgttgacttggg	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57642572	A	A	57642572	3	1	9	1	0	0	0	0	1	0	0	0	15359	594	21	2	781	2	STAC3	12	57642572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	57642572	76209323	13320	21471											
STAC3	246329	broad.mit.edu	37	chr12	57642836	57642836	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgactcacgaacaatcatccGggcacagacatcacagaact	7	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57642836	C	C	57642836	3	2	9	1	0	0	0	0	1	0	0	0	15359	1115	39	4	812	4	STAC3	12	57642836	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	264	57642836	76209059	13321	21472											
R3HDM2	22864	broad.mit.edu	37	chr12	57652621	57652621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagcaaacattgcgccccGggaagaatacggtcatctcc	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57652621	T	T	57652621	1	4	9	0	1	0	0	0	0	0	0	0	12996	1131	39	1		1	R3HDM2	12	57652621	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9785	57652621	76199274	13322	21473											
INHBC	3626	broad.mit.edu	37	chr12	57843828	57843828	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgtggtatgggcagccCaaggttgcatgggaaaacac	14	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57843828	A	A	57843828	1	1	9	0	1	0	0	0	0	0	0	0	7813	609	21	2		2	INHBC	12	57843828	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	191207	57843828	76008067	13323	21474											
INHBE	83729	broad.mit.edu	37	chr12	57849871	57849871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcccttttctgtctttcGggcagactccacttcagcct	6	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57849871	T	T	57849871	1	4	9	0	1	0	0	0	0	0	0	0	7814	1131	39	1		1	INHBE	12	57849871	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6043	57849871	76002024	13324	21475											
INHBE	83729	broad.mit.edu	37	chr12	57850382	57850382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggactggatactgcagccCgaggggtaccagctgaatta	14	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57850382	A	A	57850382	2	1	9	1	0	0	0	0	0	0	0	1	7814	639	23	1		1	INHBE	12	57850382	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	511	57850382	76001513	13325	21476											
GLI1	2735	broad.mit.edu	37	chr12	57860018	57860018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcctttgtatcttctccCtcagcacatcaacagcgagc	7	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57860018	A	A	57860018	1	1	9	0	1	0	0	0	0	0	0	0	6501	696	24	2		2	GLI1	12	57860018	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9636	57860018	75991877	13326	21477											
GLI1	2735	broad.mit.edu	37	chr12	57865368	57865368	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctccagtgaacacatatGgacctggctttggacccaac	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57865368	T	T	57865368	4	4	9	1	0	0	0	0	0	1	0	0	6501	1349	47	2	2887	2	GLI1	12	57865368	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5350	57865368	75986527	13327	21478											
ARHGAP9	64333	broad.mit.edu	37	chr12	57868462	57868462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaagttcccgctcaccCgataaatgccatccacatct	5	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57868462	A	A	57868462	3	1	9	1	0	0	0	0	1	0	0	0	891	652	23	1	539	1	ARHGAP9	12	57868462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3094	57868462	75983433	13328	21479											
MARS	4141	broad.mit.edu	37	chr12	57883623	57883623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttagatattaccattGggaagaaactgagtgtctca	9	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57883623	T	T	57883623	1	4	9	0	1	0	0	0	0	0	0	0	9408	1363	47	2		2	MARS	12	57883623	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15161	57883623	75968272	13329	21480											
MARS	4141	broad.mit.edu	37	chr12	57908634	57908634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctacttgagaaggttcGgtaagtaactgacacctctg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57908634	T	T	57908634	3	4	9	1	0	0	0	0	1	0	0	0	9408	1130	39	1	2161	1	MARS	12	57908634	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25011	57908634	75943261	13330	21481											
DDIT3	1649	broad.mit.edu	37	chr12	57910761	57910761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgcgctgctttccagccCgggctggggaatgaccactc	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57910761	A	A	57910761	3	1	9	1	0	0	0	0	1	0	0	0	4363	652	23	1	172	1	DDIT3	12	57910761	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2127	57910761	75941134	13331	21482											
DDIT3	1649	broad.mit.edu	37	chr12	57910788	57910788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatgaccactctgtttcCgtttcctggttctcccttgg	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57910788	A	A	57910788	3	1	9	1	0	0	0	0	1	0	0	0	4363	652	23	1	199	1	DDIT3	12	57910788	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	57910788	75941107	13332	21483											
MBD6	114785	broad.mit.edu	37	chr12	57921713	57921713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttctctctggccagttGgggctgcagctcctccctgg	11	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57921713	T	T	57921713	3	4	9	1	0	0	0	0	1	0	0	0	9441	1339	47	2	2345	2	MBD6	12	57921713	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10925	57921713	75930182	13333	21484											
DCTN2	10540	broad.mit.edu	37	chr12	57924520	57924520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgctggcaaagttcccCtcaactgtggccaggttttc	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57924520	A	A	57924520	3	1	9	1	0	0	0	0	1	0	0	0	4340	680	24	2	51	2	DCTN2	12	57924520	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2807	57924520	75927375	13334	21485											
DCTN2	10540	broad.mit.edu	37	chr12	57926307	57926307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctttgacactgccactcGgagaacctgagggagtggaa	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57926307	T	T	57926307	1	4	9	0	1	0	0	0	0	0	0	0	4340	1131	39	1		1	DCTN2	12	57926307	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1787	57926307	75925588	13335	21486											
DCTN2	10540	broad.mit.edu	37	chr12	57926335	57926335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggagtggaaaggagatGgggaaggtgtcttcctgacc	18	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57926335	T	T	57926335	1	4	9	0	1	0	0	0	0	0	0	0	4340	1363	47	2		2	DCTN2	12	57926335	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	57926335	75925560	13336	21487											
KIF5A	3798	broad.mit.edu	37	chr12	57969417	57969417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcaccaactttctccCaccagcatgaggccaagatc	5	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57969417	A	A	57969417	1	1	9	0	1	0	0	0	0	0	0	0	8375	609	21	2		2	KIF5A	12	57969417	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43082	57969417	75882478	13337	21488											
KIF5A	3798	broad.mit.edu	37	chr12	57970173	57970173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaaagagtaagggttccCaagggcgactccagcccctc	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57970173	A	A	57970173	1	1	9	0	1	0	0	0	0	0	0	0	8375	609	21	2		2	KIF5A	12	57970173	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	756	57970173	75881722	13338	21489											
KIF5A	3798	broad.mit.edu	37	chr12	57976426	57976426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaataggtacaacagtcccCactacccctgggttctctgg	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57976426	A	A	57976426	1	1	9	0	1	0	0	0	0	0	0	0	8375	609	21	2		2	KIF5A	12	57976426	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6253	57976426	75875469	13339	21490											
PIP4K2C	79837	broad.mit.edu	37	chr12	57989741	57989741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccttatctcctacgatcGgactctggtcatcaaagaag	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57989741	T	T	57989741	3	4	9	1	0	0	0	0	1	0	0	0	12033	1116	39	1	454	1	PIP4K2C	12	57989741	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13315	57989741	75862154	13340	21491											
PIP4K2C	79837	broad.mit.edu	37	chr12	57992902	57992902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagttcctggggatgtacCgagtcagtgtggacaacgaa	13	10	1	0	rs141529759		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57992902	A	A	57992902	2	1	9	1	0	0	0	0	0	0	0	1	12033	644	23	1		1	PIP4K2C	12	57992902	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3161	57992902	75858993	13341	21492											
DTX3	196403	broad.mit.edu	37	chr12	58000718	58000718	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgactgtgtccaagccCgtgtgggacttcctgagcaa	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58000718	A	A	58000718	2	1	9	1	0	0	0	0	0	0	0	1	4835	639	23	1		1	DTX3	12	58000718	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7816	58000718	75851177	13342	21493											
GEFT	115557	broad.mit.edu	37	chr12	58009786	58009786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatcttggagagccaacGggacttcctcaacggtgaag	12	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58009786	T	T	58009786	3	4	9	1	0	0	0	0	1	0	0	0	6392	1116	39	1	1678	1	GEFT	12	58009786	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9068	58009786	75842109	13343	21494											
GEFT	115557	broad.mit.edu	37	chr12	58009824	58009824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctctcatcctttcttccCgatgtgctctctcagcccct	5	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58009824	A	A	58009824	1	1	9	0	1	0	0	0	0	0	0	0	6392	667	23	1		1	GEFT	12	58009824	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	58009824	75842071	13344	21495											
SLC26A10	65012	broad.mit.edu	37	chr12	58014048	58014049	+	Nonsense_Mutation	DNP	GG	TT	TT													atgtcagctcctaagagtctGggaagtgcatttaagtcctg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	58014049	TT	TT	58014048	4	4	9	1	0	0	0	0	0	1	0	0	14629	1335	47	2	47	2	SLC26A10	12	58014048	Nonsense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	4224	58014048	75837847	13345	21496											
SLC26A10	65012	broad.mit.edu	37	chr12	58016356	58016356	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaggtgcttctggcctcCgtgctctgcttcacctcttc	8	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58016356	A	A	58016356	2	1	9	1	0	0	0	0	0	0	0	1	14629	639	23	1		1	SLC26A10	12	58016356	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2308	58016356	75835539	13346	21497											
B4GALNT1	2583	broad.mit.edu	37	chr12	58022620	58022620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatactggtgatgagagccCgtagccgatcataacggagg	15	8	1	2	rs140962321		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58022620	A	A	58022620	3	1	9	1	0	0	0	0	1	0	0	0	1271	652	23	1	739	1	B4GALNT1	12	58022620	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6264	58022620	75829275	13347	21498											
AGAP2	116986	broad.mit.edu	37	chr12	58124279	58124279	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtcatccccactgaccCgtgctgagggctcgggccaa	13	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58124279	A	A	58124279	2	1	9	1	0	0	0	0	0	0	0	1	368	666	23	1		1	AGAP2	12	58124279	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	101659	58124279	75727616	13348	21499											
AGAP2	116986	broad.mit.edu	37	chr12	58126642	58126642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaccctcctggaagaccCgatccacattgagcccatag	7	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58126642	A	A	58126642	3	1	9	1	0	0	0	0	1	0	0	0	368	652	23	1	1964	1	AGAP2	12	58126642	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2363	58126642	75725253	13349	21500											
TSPAN31	6302	broad.mit.edu	37	chr12	58139475	58139475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcctcttgtatggccttGggctgtgccgcatgctagaa	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58139475	T	T	58139475	1	4	9	0	1	0	0	0	0	0	0	0	16771	1363	47	2		2	TSPAN31	12	58139475	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12833	58139475	75712420	13350	21501											
TSPAN31	6302	broad.mit.edu	37	chr12	58140869	58140869	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaagcattcagacgaagcCctgaaaatcctagggggtgt	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58140869	A	A	58140869	2	1	9	1	0	0	0	0	0	0	0	1	16771	610	22	2		2	TSPAN31	12	58140869	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1394	58140869	75711026	13351	21502											
CDK4	1019	broad.mit.edu	37	chr12	58142314	58142314	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccactccattgctcactcCggattaccttcatccttatg	5	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58142314	A	A	58142314	2	1	9	1	0	0	0	0	0	0	0	1	3171	639	23	1		1	CDK4	12	58142314	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1445	58142314	75709581	13352	21503											
CDK4	1019	broad.mit.edu	37	chr12	58142329	58142329	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccggattaccttcatcCttatgtagataagagtgctg	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58142329	A	A	58142329	3	1	9	1	0	0	0	0	1	0	0	0	3171	680	24	2	24	2	CDK4	12	58142329	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	58142329	75709566	13353	21504											
CDK4	1019	broad.mit.edu	37	chr12	58142983	58142983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagcagcagctgtgctccCgactcctccatctcaggtac	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58142983	A	A	58142983	2	1	9	1	0	0	0	0	0	0	0	1	3171	639	23	1		1	CDK4	12	58142983	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	654	58142983	75708912	13354	21505											
CDK4	1019	broad.mit.edu	37	chr12	58144428	58144428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtagtccagggtatgtGggtcccatactttcgacgaa	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58144428	T	T	58144428	1	4	9	0	1	0	0	0	0	0	0	0	3171	1363	47	2		2	CDK4	12	58144428	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1445	58144428	75707467	13355	21506											
CYP27B1	1594	broad.mit.edu	37	chr12	58158181	58158181	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagcacttccttgaccacCgccttcagcaggggcagctg	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58158181	A	A	58158181	2	1	9	1	0	0	0	0	0	0	0	1	4192	639	23	1		1	CYP27B1	12	58158181	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13753	58158181	75693714	13356	21507											
CYP27B1	1594	broad.mit.edu	37	chr12	58158314	58158314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagagctcatacagagccCaagagagcgtgttggacacc	14	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58158314	A	A	58158314	3	1	9	1	0	0	0	0	1	0	0	0	4192	595	21	2	559	2	CYP27B1	12	58158314	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133	58158314	75693581	13357	21508											
METTL1	4234	broad.mit.edu	37	chr12	58163435	58163435	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgcttgaaatgtgggtcGgggaagaggaagaacatctt	15	6	1	3	rs141176795		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58163435	T	T	58163435	2	4	9	1	0	0	0	0	0	0	0	1	9586	1124	39	1		1	METTL1	12	58163435	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5121	58163435	75688460	13358	21509											
AVIL	10677	broad.mit.edu	37	chr12	58191674	58191674	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttcttgctttagaaaagCcccttttctttcttcatttg	5	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58191674	G	G	58191674	2	3	9	1	0	0	0	0	0	0	0	1	1232	726	26	4		4	AVIL	12	58191674	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28239	58191674	75660221	13359	21510											
AVIL	10677	broad.mit.edu	37	chr12	58207158	58207158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgggaggagtccttccCgatccagaagtggatgtcct	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58207158	A	A	58207158	3	1	9	1	0	0	0	0	1	0	0	0	1232	652	23	1	2337	1	AVIL	12	58207158	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15484	58207158	75644737	13360	21511											
LRIG3	121227	broad.mit.edu	37	chr12	59279588	59279588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttagagattctcttttaGggtaactaaattctagctac	6	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59279588	T	T	59279588	1	4	9	0	1	0	0	0	0	0	0	0	9033	1015	35	2		2	LRIG3	12	59279588	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1072430	59279588	74572307	13361	21512											
LRIG3	121227	broad.mit.edu	37	chr12	59307715	59307715	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtccctatggaactcccactCaaggttcctgcaaacataca	6	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59307715	A	A	59307715	1	1	9	0	1	0	0	0	0	0	0	0	9033	841	29	3		3	LRIG3	12	59307715	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28127	59307715	74544180	13362	21513											
USP15	9958	broad.mit.edu	37	chr12	62783464	62783464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttagtagtattatggaacGggatgatatttatgtgtaag	11	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62783464	T	T	62783464	3	4	9	1	0	0	0	0	1	0	0	0	17172	1116	39	1	1596	1	USP15	12	62783464	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3475749	62783464	71068431	13363	21514											
USP15	9958	broad.mit.edu	37	chr12	62786164	62786164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctaggtgctgaagatcCctggtaagagacaaaattaa	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62786164	A	A	62786164	3	1	9	1	0	0	0	0	1	0	0	0	17172	623	22	2	2396	2	USP15	12	62786164	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2700	62786164	71065731	13364	21515											
MON2	23041	broad.mit.edu	37	chr12	62946853	62946853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaactatgtgtggatcccCgtcctgctgtcaggaagagt	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62946853	A	A	62946853	3	1	9	1	0	0	0	0	1	0	0	0	9794	652	23	1	3203	1	MON2	12	62946853	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160689	62946853	70905042	13365	21516											
MON2	23041	broad.mit.edu	37	chr12	62986381	62986381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagttgatggaaatacctGggcacaagtaattgccttat	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62986381	T	T	62986381	3	4	9	1	0	0	0	0	1	0	0	0	9794	1357	47	2	5144	2	MON2	12	62986381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39528	62986381	70865514	13366	21517											
PPM1H	57460	broad.mit.edu	37	chr12	63149006	63149006	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatccctgagacactacGgtgaaggtgaagatcaaagt	11	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63149006	T	T	63149006	1	4	9	0	1	0	0	0	0	0	0	0	12442	1131	39	1		1	PPM1H	12	63149006	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	162625	63149006	70702889	13367	21518											
DPY19L2	283417	broad.mit.edu	37	chr12	63962990	63962990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccatatcagatagcataGggttaatactcacttagttc	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63962990	T	T	63962990	1	4	9	0	1	0	0	0	0	0	0	0	4781	1015	35	2		2	DPY19L2	12	63962990	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	813984	63962990	69888905	13368	21519											
DPY19L2	283417	broad.mit.edu	37	chr12	63991613	63991613	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccatgaagtcaaattcGggagcacaggtatatattaa	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63991613	T	T	63991613	2	4	9	1	0	0	0	0	0	0	0	1	4781	1103	39	1		1	DPY19L2	12	63991613	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28623	63991613	69860282	13369	21520											
TMEM5	10329	broad.mit.edu	37	chr12	64174806	64174806	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttaaaacagaacagtcCactttggaaagtgaagaatg	8	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64174806	A	A	64174806	2	1	9	1	0	0	0	0	0	0	0	1	16297	581	21	2		2	TMEM5	12	64174806	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	183193	64174806	69677089	13370	21521											
SRGAP1	57522	broad.mit.edu	37	chr12	64377852	64377852	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattgagacggaatattccCggaatctagagaagttagca	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64377852	A	A	64377852	2	1	9	1	0	0	0	0	0	0	0	1	15263	643	23	1		1	SRGAP1	12	64377852	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	203046	64377852	69474043	13371	21522											
C12orf56	115749	broad.mit.edu	37	chr12	64746823	64746823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgaactcaaaaattccGggtaatcatcaatctggaaa	8	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64746823	T	T	64746823	3	4	9	1	0	0	0	0	1	0	0	0	1713	1116	39	1	1650	1	C12orf56	12	64746823	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	368971	64746823	69105072	13372	21523											
XPOT	11260	broad.mit.edu	37	chr12	64816976	64816976	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaggcaatcatgttggcCgttatgaaaaaattgactta	8	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64816976	A	A	64816976	2	1	9	1	0	0	0	0	0	0	0	1	17577	639	23	1		1	XPOT	12	64816976	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70153	64816976	69034919	13373	21524											
TBK1	29110	broad.mit.edu	37	chr12	64889201	64889201	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagactttagactttgttGggactgtgatgatcatttct	9	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64889201	T	T	64889201	1	4	9	0	1	0	0	0	0	0	0	0	15759	1363	47	2		2	TBK1	12	64889201	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	72225	64889201	68962694	13374	21525											
LEMD3	23592	broad.mit.edu	37	chr12	65639640	65639640	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcttttttaatatcacaGggttgtgtatatgttaaatg	7	4	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65639640	T	T	65639640	5	4	9	1	0	0	0	0	0	0	1	0	8793	1014	35	2	2539	2	LEMD3	12	65639640	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	750439	65639640	68212255	13375	21526											
MSRB3	253827	broad.mit.edu	37	chr12	65702342	65702342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcttctcgttttgttGgtgaagatatcacagtgatg	10	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65702342	T	T	65702342	1	4	9	0	1	0	0	0	0	0	0	0	9983	1363	47	2		2	MSRB3	12	65702342	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	62702	65702342	68149553	13376	21527											
IRAK3	11213	broad.mit.edu	37	chr12	66611031	66611031	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctactgtgagtatgttttctCtggaatttcctcctctttgt	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66611031	A	A	66611031	1	1	9	0	1	0	0	0	0	0	0	0	7894	928	32	3		3	IRAK3	12	66611031	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	908689	66611031	67240864	13377	21528											
IRAK3	11213	broad.mit.edu	37	chr12	66628075	66628075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggctgatcattgatgcGggctgtagtgacatggtgtg	17	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66628075	T	T	66628075	1	4	9	0	1	0	0	0	0	0	0	0	7894	1131	39	1		1	IRAK3	12	66628075	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17044	66628075	67223820	13378	21529											
IRAK3	11213	broad.mit.edu	37	chr12	66638187	66638187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaaccagatatgaagaaGgtgagtttatagtatgtttg	10	2	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66638187	T	T	66638187	1	4	9	0	1	0	0	0	0	0	0	0	7894	1015	35	2		2	IRAK3	12	66638187	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10112	66638187	67213708	13379	21530											
IRAK3	11213	broad.mit.edu	37	chr12	66641828	66641828	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcccaggacttaaggccCtataaggtaaatatagatcc	7	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66641828	A	A	66641828	2	1	9	1	0	0	0	0	0	0	0	1	7894	668	24	2		2	IRAK3	12	66641828	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3641	66641828	67210067	13380	21531											
HELB	92797	broad.mit.edu	37	chr12	66704292	66704292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaagtcaactagaggcGgacaaggctatagaagtttt	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66704292	T	T	66704292	2	4	9	1	0	0	0	0	0	0	0	1	7112	1103	39	1		1	HELB	12	66704292	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	62464	66704292	67147603	13381	21532											
HELB	92797	broad.mit.edu	37	chr12	66717831	66717831	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccaggaatgcatacctctCagacttactacctgaaaata	5	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66717831	A	A	66717831	4	1	9	1	0	0	0	0	0	1	0	0	7112	838	29	3	2404	3	HELB	12	66717831	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13539	66717831	67134064	13382	21533											
GRIP1	23426	broad.mit.edu	37	chr12	66786662	66786662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtactgaatataaattccCtgacataccttatacattca	4	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66786662	A	A	66786662	1	1	9	0	1	0	0	0	0	0	0	0	6853	696	24	2		2	GRIP1	12	66786662	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	68831	66786662	67065233	13383	21534											
GRIP1	23426	broad.mit.edu	37	chr12	66800084	66800084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaattatcttcatctttgcGgattttgagcttcaccaggt	8	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66800084	T	T	66800084	3	4	9	1	0	0	0	0	1	0	0	0	6853	1116	39	1	1463	1	GRIP1	12	66800084	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13422	66800084	67051811	13384	21535											
GRIP1	23426	broad.mit.edu	37	chr12	66909526	66909526	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgagcaacctgtcaccGggtttgatcgtgccctctct	9	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66909526	T	T	66909526	2	4	9	1	0	0	0	0	0	0	0	1	6853	1103	39	1		1	GRIP1	12	66909526	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	109442	66909526	66942369	13385	21536											
CAND1	55832	broad.mit.edu	37	chr12	67703958	67703958	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtccatttaaacatacGgttgatgatggtctggatat	11	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67703958	T	T	67703958	2	4	9	1	0	0	0	0	0	0	0	1	2641	1103	39	1		1	CAND1	12	67703958	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	794432	67703958	66147937	13386	21537											
MDM1	56890	broad.mit.edu	37	chr12	68689164	68689164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgcaatgaaaaaatccCgagattatattcattgccaa	5	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68689164	A	A	68689164	1	1	9	0	1	0	0	0	0	0	0	0	9505	667	23	1		1	MDM1	12	68689164	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	985206	68689164	65162731	13387	21538											
MDM1	56890	broad.mit.edu	37	chr12	68719240	68719240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgattggctgcaaaagctGgagcagtttctttagaagtc	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68719240	T	T	68719240	3	4	9	1	0	0	0	0	1	0	0	0	9505	1348	47	2	1574	2	MDM1	12	68719240	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30076	68719240	65132655	13388	21539											
RAP1B	5908	broad.mit.edu	37	chr12	69045864	69045864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataccaaagtatatacacCgtttgtacagtattgacttc	5	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69045864	A	A	69045864	1	1	9	0	1	0	0	0	0	0	0	0	13144	667	23	1		1	RAP1B	12	69045864	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	326624	69045864	64806031	13389	21540											
NUP107	57122	broad.mit.edu	37	chr12	69082777	69082777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatcatcccctgtaatccGggaggcagaggtgacacgga	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69082777	T	T	69082777	3	4	9	1	0	0	0	0	1	0	0	0	10848	1116	39	1	50	1	NUP107	12	69082777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36913	69082777	64769118	13390	21541											
NUP107	57122	broad.mit.edu	37	chr12	69084485	69084485	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaggagggaagtcgcccCgacttacgcagtcttcaggg	14	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69084485	A	A	69084485	2	1	9	1	0	0	0	0	0	0	0	1	10848	644	23	1		1	NUP107	12	69084485	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1708	69084485	64767410	13391	21542											
NUP107	57122	broad.mit.edu	37	chr12	69107539	69107539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcataccttaaaacaacGgcagctgacttcttacgttg	7	11	2	1	rs146007387		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69107539	T	T	69107539	3	4	9	1	0	0	0	0	1	0	0	0	10848	1116	39	1	962	1	NUP107	12	69107539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23054	69107539	64744356	13392	21543											
SLC35E3	55508	broad.mit.edu	37	chr12	69158527	69158527	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctgcattactttattcGgaggatatgttttatttaag	8	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69158527	T	T	69158527	4	4	9	1	0	0	0	0	0	1	0	0	14700	1117	39	1	817	1	SLC35E3	12	69158527	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50988	69158527	64693368	13393	21544											
MDM2	4193	broad.mit.edu	37	chr12	69203017	69203017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caataccaacatgtctgtacCtactgatggtgctgtaacca	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69203017	A	A	69203017	3	1	9	1	0	0	0	0	1	0	0	0	9506	681	24	2	50	2	MDM2	12	69203017	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44490	69203017	64648878	13394	21545											
CPM	1368	broad.mit.edu	37	chr12	69265643	69265643	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggcatgatgtgtatccGggtactattgatcagatttg	13	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69265643	T	T	69265643	2	4	9	1	0	0	0	0	0	0	0	1	3840	1115	39	1		1	CPM	12	69265643	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	62626	69265643	64586252	13395	21546											
CPSF6	11052	broad.mit.edu	37	chr12	69651571	69651571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccaggaggcagttccCgtgcagcatttccacaaggt	11	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69651571	A	A	69651571	3	1	9	1	0	0	0	0	1	0	0	0	3861	652	23	1	598	1	CPSF6	12	69651571	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	385928	69651571	64200324	13396	21547											
CPSF6	11052	broad.mit.edu	37	chr12	69651602	69651602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacaaggtggtagaggacGgggccgttttccaggggctg	17	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69651602	T	T	69651602	3	4	9	1	0	0	0	0	1	0	0	0	3861	1116	39	1	629	1	CPSF6	12	69651602	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	69651602	64200293	13397	21548											
LYZ	4069	broad.mit.edu	37	chr12	69746970	69746970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcaaaacagagatgtcCgtcagtatgttcaaggttgt	11	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69746970	A	A	69746970	3	1	9	1	0	0	0	0	1	0	0	0	9218	652	23	1	432	1	LYZ	12	69746970	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95368	69746970	64104925	13398	21549											
CCT2	10576	broad.mit.edu	37	chr12	69980089	69980089	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaacatctttaaggcaGgagctgatgaagagagagca	12	6	1	4	rs11541104		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69980089	T	T	69980089	4	4	9	1	0	0	0	0	0	1	0	0	2983	1001	35	2	49	2	CCT2	12	69980089	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	233119	69980089	63871806	13399	21550											
RAB3IP	117177	broad.mit.edu	37	chr12	70150363	70150363	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagtactgatagtctgtctCgtttacgaagcccatctgtt	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70150363	A	A	70150363	3	1	9	1	0	0	0	0	1	0	0	0	13046	884	31	3	488	3	RAB3IP	12	70150363	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	170274	70150363	63701532	13400	21551											
PTPRB	5787	broad.mit.edu	37	chr12	70974880	70974880	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactgttgttaccaccacGgagtacaggctgccggactt	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70974880	T	T	70974880	2	4	9	1	0	0	0	0	0	0	0	1	12904	1103	39	1		1	PTPRB	12	70974880	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	824517	70974880	62877015	13401	21552											
PTPRB	5787	broad.mit.edu	37	chr12	70983832	70983832	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttcccggtacgagcccCgtgtcatccatgacatactg	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70983832	A	A	70983832	2	1	9	1	0	0	0	0	0	0	0	1	12904	639	23	1		1	PTPRB	12	70983832	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8952	70983832	62868063	13402	21553											
PTPRR	5801	broad.mit.edu	37	chr12	71286541	71286541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccagcagattgagagacGggtcatatgcgggtctagga	16	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71286541	T	T	71286541	3	4	9	1	0	0	0	0	1	0	0	0	12918	1116	39	1	1750	1	PTPRR	12	71286541	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	302709	71286541	62565354	13403	21554											
PTPRR	5801	broad.mit.edu	37	chr12	71286758	71286758	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtttcctgaaaagcaccCtgaaagagggaagaagcaga	11	7	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71286758	A	A	71286758	5	1	9	1	0	0	0	0	0	0	1	0	12918	695	24	2	1967	2	PTPRR	12	71286758	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	217	71286758	62565137	13404	21555											
TSPAN8	7103	broad.mit.edu	37	chr12	71519125	71519125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacagattcatttgttccCgatctggcaatacaggacca	7	12	2	1	rs144070931		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71519125	A	A	71519125	3	1	9	1	0	0	0	0	1	0	0	0	16778	652	23	1	14	1	TSPAN8	12	71519125	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	232367	71519125	62332770	13405	21556											
TSPAN8	7103	broad.mit.edu	37	chr12	71533526	71533526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgactttcttttatagcacCgcagcatcccaggaagccca	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71533526	A	A	71533526	3	1	9	1	0	0	0	0	1	0	0	0	16778	652	23	1	511	1	TSPAN8	12	71533526	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14401	71533526	62318369	13406	21557											
LGR5	8549	broad.mit.edu	37	chr12	71898429	71898429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatcagtcagctgctccCgaatcccctgcccagtctcc	6	19	3	0	rs143988867		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71898429	A	A	71898429	3	1	9	1	0	0	0	0	1	0	0	0	8829	652	23	1	254	1	LGR5	12	71898429	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	364903	71898429	61953466	13407	21558											
ZFC3H1	196441	broad.mit.edu	37	chr12	72004321	72004321	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttatcagttttacctcCttctgatgcttcaaacaaga	6	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72004321	A	A	72004321	4	1	9	1	0	0	0	0	0	1	0	0	17759	690	24	2	116	2	ZFC3H1	12	72004321	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	105892	72004321	61847574	13408	21559											
ZFC3H1	196441	broad.mit.edu	37	chr12	72017824	72017824	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaataatgctatggataacGgtgtagaccttttaaacttt	7	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72017824	T	T	72017824	1	4	9	0	1	0	0	0	0	0	0	0	17759	1131	39	1		1	ZFC3H1	12	72017824	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13503	72017824	61834071	13409	21560											
ZFC3H1	196441	broad.mit.edu	37	chr12	72017980	72017980	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaaaggacaaaatattGgatgtttcctgcttggctgc	11	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72017980	T	T	72017980	2	4	9	1	0	0	0	0	0	0	0	1	17759	1335	47	2		2	ZFC3H1	12	72017980	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	156	72017980	61833915	13410	21561											
ZFC3H1	196441	broad.mit.edu	37	chr12	72026153	72026153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttgctttaagggcacGggcttcttttaatttttgaa	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72026153	T	T	72026153	3	4	9	1	0	0	0	0	1	0	0	0	17759	1116	39	1	3094	1	ZFC3H1	12	72026153	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8173	72026153	61825742	13411	21562											
TMEM19	55266	broad.mit.edu	37	chr12	72091106	72091106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtaatggagctgtaccCacagaactggccctgctgta	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72091106	A	A	72091106	2	1	9	1	0	0	0	0	0	0	0	1	16236	581	21	2		2	TMEM19	12	72091106	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64953	72091106	61760789	13412	21563											
TMEM19	55266	broad.mit.edu	37	chr12	72091240	72091240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctgctggagacacatGggcttcagaagttggcccag	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72091240	T	T	72091240	3	4	9	1	0	0	0	0	1	0	0	0	16236	1357	47	2	577	2	TMEM19	12	72091240	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	134	72091240	61760655	13413	21564											
TMEM19	55266	broad.mit.edu	37	chr12	72094674	72094674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaggcaaggcacatagcaGggaaacccattcttgataac	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72094674	T	T	72094674	3	4	9	1	0	0	0	0	1	0	0	0	16236	1000	35	2	932	2	TMEM19	12	72094674	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3434	72094674	61757221	13414	21565											
TBC1D15	64786	broad.mit.edu	37	chr12	72243501	72243501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctcttttcaaagactcGggggtcactccattttgata	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72243501	T	T	72243501	1	4	9	0	1	0	0	0	0	0	0	0	15723	1131	39	1		1	TBC1D15	12	72243501	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	148827	72243501	61608394	13415	21566											
TBC1D15	64786	broad.mit.edu	37	chr12	72288555	72288555	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgagaggcagcgatccCtctacacatcaacgaccacc	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72288555	A	A	72288555	2	1	9	1	0	0	0	0	0	0	0	1	15723	668	24	2		2	TBC1D15	12	72288555	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45054	72288555	61563340	13416	21567											
TPH2	121278	broad.mit.edu	37	chr12	72366400	72366400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctatcccactcatgcttgccGagagtatttgaaaaacttcc	6	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72366400	T	T	72366400	3	4	9	1	0	0	0	0	1	0	0	0	16526	1058	37	3	732	3	TPH2	12	72366400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77845	72366400	61485495	13417	21568											
TPH2	121278	broad.mit.edu	37	chr12	72366470	72366470	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggacaatgtgcctcaactCgaagatgtctccatgtttct	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72366470	A	A	72366470	2	1	9	1	0	0	0	0	0	0	0	1	16526	871	31	3		3	TPH2	12	72366470	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	72366470	61485425	13418	21569											
TRHDE	29953	broad.mit.edu	37	chr12	72680608	72680608	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatgccagtggaaacttcCgtgtttgaggaagatggatg	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72680608	A	A	72680608	2	1	9	1	0	0	0	0	0	0	0	1	16603	639	23	1		1	TRHDE	12	72680608	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	314138	72680608	61171287	13419	21570											
TRHDE	29953	broad.mit.edu	37	chr12	72969290	72969290	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgtcagtaaccgagcGggcttgatcgatgatgcctt	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72969290	T	T	72969290	2	4	9	1	0	0	0	0	0	0	0	1	16603	1103	39	1		1	TRHDE	12	72969290	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	288682	72969290	60882605	13420	21571											
GLIPR1L1	256710	broad.mit.edu	37	chr12	75763887	75763887	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccatttctgaagccaacGgggagagcacctcagcagac	10	12	2	3	rs148073028	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75763887	T	T	75763887	2	4	9	1	0	0	0	0	0	0	0	1	6506	1103	39	1		1	GLIPR1L1	12	75763887	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2794597	75763887	58088008	13421	21572											
GLIPR1L2	144321	broad.mit.edu	37	chr12	75807421	75807421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggttgtgctgttactcCatgttcaaaaattggacata	9	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75807421	A	A	75807421	3	1	9	1	0	0	0	0	1	0	0	0	6507	594	21	2	534	2	GLIPR1L2	12	75807421	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43534	75807421	58044474	13422	21573											
GLIPR1	11010	broad.mit.edu	37	chr12	75875711	75875711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccccacaagctgcaccCaaacttcacttcactgggag	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75875711	A	A	75875711	3	1	9	1	0	0	0	0	1	0	0	0	6505	594	21	2	278	2	GLIPR1	12	75875711	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68290	75875711	57976184	13423	21574											
NAP1L1	4673	broad.mit.edu	37	chr12	76461138	76461138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagataaataaggactatGgaaaagctgtacctttcaat	8	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76461138	T	T	76461138	1	4	9	0	1	0	0	0	0	0	0	0	10250	1363	47	2		2	NAP1L1	12	76461138	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	585427	76461138	57390757	13424	21575											
NAP1L1	4673	broad.mit.edu	37	chr12	76468013	76468013	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccatgttgtaagaactcCaaatatctatggagagaaac	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76468013	A	A	76468013	1	1	9	0	1	0	0	0	0	0	0	0	10250	609	21	2		2	NAP1L1	12	76468013	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	6875	76468013	57383882	13425	21576											
OSBPL8	114882	broad.mit.edu	37	chr12	76783469	76783469	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaatctgaaagtttatcCaggaaagaacggggttccaa	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76783469	A	A	76783469	2	1	9	1	0	0	0	0	0	0	0	1	11377	581	21	2		2	OSBPL8	12	76783469	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	315456	76783469	57068426	13426	21577											
OSBPL8	114882	broad.mit.edu	37	chr12	76853716	76853716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcaaacaaatacagtcCaaatcaggaagaagcaaaat	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76853716	A	A	76853716	1	1	9	0	1	0	0	0	0	0	0	0	11377	609	21	2		2	OSBPL8	12	76853716	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	70247	76853716	56998179	13427	21578											
ZDHHC17	23390	broad.mit.edu	37	chr12	77222297	77222297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggttataaagatcatacCaaaaacaaattttgtttgtt	5	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77222297	A	A	77222297	1	1	9	0	1	0	0	0	0	0	0	0	17733	609	21	2		2	ZDHHC17	12	77222297	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	368581	77222297	56629598	13428	21579											
ZDHHC17	23390	broad.mit.edu	37	chr12	77239531	77239531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattgtggtgtgtgcaacCgctgtatagcaaaatttgat	10	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77239531	A	A	77239531	3	1	9	1	0	0	0	0	1	0	0	0	17733	652	23	1	1422	1	ZDHHC17	12	77239531	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17234	77239531	56612364	13429	21580											
ZDHHC17	23390	broad.mit.edu	37	chr12	77239562	77239562	+	Missense_Mutation	SNP	C	A	A													aaaatttgatcatcattgccCatgggtgggtaactgtgtag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77239562	A	A	77239562	3	1	9	1	0	0	0	0	1	0	0	0	17733	594	21	2	1453	2	ZDHHC17	12	77239562	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	77239562	56612333	13430	21581	144	2									
ZDHHC17	23390	broad.mit.edu	37	chr12	77239565	77239565	+	Missense_Mutation	SNP	G	T	T													atttgatcatcattgcccatGggtgggtaactgtgtaggta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77239565	T	T	77239565	3	4	9	1	0	0	0	0	1	0	0	0	17733	1357	47	2	1456	2	ZDHHC17	12	77239565	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3	77239565	56612330	13431	21582	144	2									
E2F7	144455	broad.mit.edu	37	chr12	77427654	77427654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttgttcttctctgtacGggctgctcggttctgagttc	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77427654	T	T	77427654	3	4	9	1	0	0	0	0	1	0	0	0	4912	1116	39	1	1467	1	E2F7	12	77427654	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	188089	77427654	56424241	13432	21583											
E2F7	144455	broad.mit.edu	37	chr12	77449702	77449702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtccctttttcttctccCggtcccttatatctgggctg	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77449702	A	A	77449702	3	1	9	1	0	0	0	0	1	0	0	0	4912	652	23	1	2477	1	E2F7	12	77449702	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22048	77449702	56402193	13433	21584											
NAV3	89795	broad.mit.edu	37	chr12	78334228	78334228	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattattggtaagcccttcCttctgaaagaaagcatgaaa	8	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78334228	A	A	78334228	1	1	9	0	1	0	0	0	0	0	0	0	10279	696	24	2		2	NAV3	12	78334228	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	884526	78334228	55517667	13434	21585											
NAV3	89795	broad.mit.edu	37	chr12	78401192	78401192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcagcaacatagccaccCgaataccgcgacagtggcac	9	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78401192	A	A	78401192	3	1	9	1	0	0	0	0	1	0	0	0	10279	652	23	1	1904	1	NAV3	12	78401192	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66964	78401192	55450703	13435	21586											
NAV3	89795	broad.mit.edu	37	chr12	78531100	78531100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttctctggaggaaagacctCgtgccatcagtcattcgggc	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78531100	A	A	78531100	3	1	9	1	0	0	0	0	1	0	0	0	10279	884	31	3	4659	3	NAV3	12	78531100	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129908	78531100	55320795	13436	21587											
SYT1	6857	broad.mit.edu	37	chr12	79689968	79689968	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaatttgagacaaaagtCcaccgaaaaacccttaatcc	5	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79689968	A	A	79689968	2	1	9	1	0	0	0	0	0	0	0	1	15584	842	30	3		3	SYT1	12	79689968	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1158868	79689968	54161927	13437	21588											
PPP1R12A	4659	broad.mit.edu	37	chr12	80199975	80199975	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctgctgaggaagaaccCgttgtaatctttgtagtagt	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80199975	A	A	80199975	2	1	9	1	0	0	0	0	0	0	0	1	12455	639	23	1		1	PPP1R12A	12	80199975	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	510007	80199975	53651920	13438	21589											
PPP1R12A	4659	broad.mit.edu	37	chr12	80214930	80214930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtggagatttcttgtccCgtttttcactatggagcttt	9	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80214930	A	A	80214930	3	1	9	1	0	0	0	0	1	0	0	0	12455	652	23	1	2284	1	PPP1R12A	12	80214930	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14955	80214930	53636965	13439	21590											
MYF5	4617	broad.mit.edu	37	chr12	81111227	81111227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcctcaggaatgccatcCgctacatcgagagcctgcag	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81111227	A	A	81111227	3	1	9	1	0	0	0	0	1	0	0	0	10121	652	23	1	387	1	MYF5	12	81111227	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	896297	81111227	52740668	13440	21591											
ACSS3	79611	broad.mit.edu	37	chr12	81647101	81647101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagtcaatcctttcccatGgtaccgtggcagactgtgct	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81647101	T	T	81647101	3	4	9	1	0	0	0	0	1	0	0	0	190	1348	47	2	1789	2	ACSS3	12	81647101	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	535874	81647101	52204794	13441	21592											
ACSS3	79611	broad.mit.edu	37	chr12	81647160	81647160	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttaaaaggtcatgtcccCttagcactctgtgtattgag	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81647160	A	A	81647160	2	1	9	1	0	0	0	0	0	0	0	1	190	668	24	2		2	ACSS3	12	81647160	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	81647160	52204735	13442	21593											
PPFIA2	8499	broad.mit.edu	37	chr12	81762458	81762458	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgtatataaaacaaacatGagcattgcaaaatattcatg	6	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81762458	T	T	81762458	1	4	9	0	1	0	0	0	0	0	0	0	12406	1305	45	3		3	PPFIA2	12	81762458	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	115298	81762458	52089437	13443	21594											
TMTC2	160335	broad.mit.edu	37	chr12	83289719	83289719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccaactcggacaacccCgctgctgattcggacagcct	8	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83289719	A	A	83289719	2	1	9	1	0	0	0	0	0	0	0	1	16384	639	23	1		1	TMTC2	12	83289719	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1527261	83289719	50562176	13444	21595											
TMTC2	160335	broad.mit.edu	37	chr12	83289934	83289934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactatggtttgaagagccCgagcgtagacagagaatgca	12	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83289934	A	A	83289934	3	1	9	1	0	0	0	0	1	0	0	0	16384	652	23	1	1002	1	TMTC2	12	83289934	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	215	83289934	50561961	13445	21596											
LRRIQ1	84125	broad.mit.edu	37	chr12	85450946	85450946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcttcgatgtggcccttGggatactttacagcaggtat	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85450946	T	T	85450946	3	4	9	1	0	0	0	0	1	0	0	0	9116	1357	47	2	2401	2	LRRIQ1	12	85450946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2161012	85450946	48400949	13446	21597											
LRRIQ1	84125	broad.mit.edu	37	chr12	85518090	85518090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagatattcctgagaaatGgatggactctgtctccagcc	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85518090	T	T	85518090	3	4	9	1	0	0	0	0	1	0	0	0	9116	1357	47	2	3862	2	LRRIQ1	12	85518090	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67144	85518090	48333805	13447	21598											
ALX1	8092	broad.mit.edu	37	chr12	85677430	85677430	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacaactgtaacagtctcCgaatgtctcccgtgaaaggg	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85677430	A	A	85677430	2	1	9	1	0	0	0	0	0	0	0	1	556	644	23	1		1	ALX1	12	85677430	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	159340	85677430	48174465	13448	21599											
ALX1	8092	broad.mit.edu	37	chr12	85695100	85695100	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagttcagccacgtgccCctcaacaattttttcactga	5	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85695100	A	A	85695100	2	1	9	1	0	0	0	0	0	0	0	1	556	610	22	2		2	ALX1	12	85695100	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17670	85695100	48156795	13449	21600											
RASSF9	9182	broad.mit.edu	37	chr12	86198822	86198822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctttcatgcttttctcCaaatcacacttaacactctc	2	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86198822	A	A	86198822	3	1	9	1	0	0	0	0	1	0	0	0	13201	593	21	2	345	2	RASSF9	12	86198822	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	503722	86198822	47653073	13450	21601											
RASSF9	9182	broad.mit.edu	37	chr12	86199249	86199249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaatgtctccatattatctCgatcatgagaaactgtgtcc	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86199249	A	A	86199249	3	1	9	1	0	0	0	0	1	0	0	0	13201	884	31	3	772	3	RASSF9	12	86199249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	427	86199249	47652646	13451	21602											
RASSF9	9182	broad.mit.edu	37	chr12	86199354	86199354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcttcatgtagtttgctGggctgagctcccacaatttt	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86199354	T	T	86199354	3	4	9	1	0	0	0	0	1	0	0	0	13201	1348	47	2	877	2	RASSF9	12	86199354	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	105	86199354	47652541	13452	21603											
C12orf29	91298	broad.mit.edu	37	chr12	88440623	88440623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccattacatcttcttatacCacatggagcatttcaaataa	3	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88440623	A	A	88440623	3	1	9	1	0	0	0	0	1	0	0	0	1693	594	21	2	681	2	C12orf29	12	88440623	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2241269	88440623	45411272	13453	21604											
CEP290	80184	broad.mit.edu	37	chr12	88448135	88448135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctaagaacttgaagctccCgtttaaggccttgctctgtc	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88448135	A	A	88448135	3	1	9	1	0	0	0	0	1	0	0	0	3283	652	23	1	439	1	CEP290	12	88448135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7512	88448135	45403760	13454	21605											
CEP290	80184	broad.mit.edu	37	chr12	88524119	88524119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtagtcactgtcttcccCtcttcttgataaaagtgttt	7	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88524119	A	A	88524119	3	1	9	1	0	0	0	0	1	0	0	0	3283	681	24	2	7028	2	CEP290	12	88524119	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75984	88524119	45327776	13455	21606											
CEP290	80184	broad.mit.edu	37	chr12	88530529	88530529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatttcattacgtaaaaacCgagtatctcgtccacctgca	5	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88530529	A	A	88530529	3	1	9	1	0	0	0	0	1	0	0	0	3283	652	23	1	7303	1	CEP290	12	88530529	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6410	88530529	45321366	13456	21607											
KITLG	4254	broad.mit.edu	37	chr12	88926233	88926233	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataccaaaacatccatcccGgggacatatttgagggttat	8	10	0	1	rs61924705	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88926233	T	T	88926233	2	4	9	1	0	0	0	0	0	0	0	1	8401	1103	39	1		1	KITLG	12	88926233	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	395704	88926233	44925662	13457	21608											
DUSP6	1848	broad.mit.edu	37	chr12	89744621	89744621	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggacagcggactaccatcCgagtctgttgcactattggg	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89744621	A	A	89744621	2	1	9	1	0	0	0	0	0	0	0	1	4869	639	23	1		1	DUSP6	12	89744621	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	818388	89744621	44107274	13458	21609											
POC1B	282809	broad.mit.edu	37	chr12	89819089	89819089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctggtgacattaaggaaGggttcaagaaatatccacag	10	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89819089	T	T	89819089	3	4	9	1	0	0	0	0	1	0	0	0	12271	1000	35	2	263	2	POC1B	12	89819089	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74468	89819089	44032806	13459	21610											
GALNT4	8693	broad.mit.edu	37	chr12	89918104	89918104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggctttcccccactcccCaagtgcacgggaatctgcag	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89918104	A	A	89918104	3	1	9	1	0	0	0	0	1	0	0	0	6277	594	21	2	1517	2	GALNT4	12	89918104	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99015	89918104	43933791	13460	21611											
ATP2B1	490	broad.mit.edu	37	chr12	90005070	90005070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatttggtagcaatggccCgagcagtattaatattatca	8	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90005070	A	A	90005070	3	1	9	1	0	0	0	0	1	0	0	0	1143	652	23	1	1709	1	ATP2B1	12	90005070	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86966	90005070	43846825	13461	21612											
ATP2B1	490	broad.mit.edu	37	chr12	90021407	90021407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtatacagtagatttttGgatataatgaaaacaagctc	8	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90021407	T	T	90021407	1	4	9	0	1	0	0	0	0	0	0	0	1143	1363	47	2		2	ATP2B1	12	90021407	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16337	90021407	43830488	13462	21613											
ATP2B1	490	broad.mit.edu	37	chr12	90021479	90021479	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcgattctcaatagctcCatcttgtttcttatctgtag	7	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90021479	A	A	90021479	4	1	9	1	0	0	0	0	0	1	0	0	1143	603	21	2	2937	2	ATP2B1	12	90021479	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	90021479	43830416	13463	21614											
ATP2B1	490	broad.mit.edu	37	chr12	90035975	90035975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgataaaaagaaaggccCaatgatactatggctgcaat	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90035975	A	A	90035975	3	1	9	1	0	0	0	0	1	0	0	0	1143	593	21	2	3530	2	ATP2B1	12	90035975	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14496	90035975	43815920	13464	21615											
C12orf12	196477	broad.mit.edu	37	chr12	91347683	91347683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcatttttcttctcctcCtcttcttccaccagcagcgg	4	16	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91347683	A	A	91347683	3	1	9	1	0	0	0	0	1	0	0	0	1689	680	24	2	387	2	C12orf12	12	91347683	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1311708	91347683	42504212	13465	21616											
C12orf12	196477	broad.mit.edu	37	chr12	91347702	91347702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcttccaccagcagcGgggcaagagactggttttcc	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91347702	T	T	91347702	3	4	9	1	0	0	0	0	1	0	0	0	1689	1116	39	1	406	1	C12orf12	12	91347702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	91347702	42504193	13466	21617											
DCN	1634	broad.mit.edu	37	chr12	91550874	91550874	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaatgctggtgatattGgtatcagcaatgcggatgta	14	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91550874	T	T	91550874	2	4	9	1	0	0	0	0	0	0	0	1	4330	1335	47	2		2	DCN	12	91550874	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	203172	91550874	42301021	13467	21618											
BTG1	694	broad.mit.edu	37	chr12	92538170	92538170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggttgatgcgaatacaacGgtaacccgatcccttgcatg	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92538170	T	T	92538170	3	4	9	1	0	0	0	0	1	0	0	0	1563	1116	39	1	317	1	BTG1	12	92538170	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	987296	92538170	41313725	13468	21619											
CLLU1OS	574016	broad.mit.edu	37	chr12	92814898	92814898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatgcagagatggctcttGgttttccttctgaaatctca	8	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92814898	T	T	92814898	3	4	9	1	0	0	0	0	1	0	0	0	3573	1348	47	2	115	2	CLLU1OS	12	92814898	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	276728	92814898	41036997	13469	21620											
PLEKHG7	440107	broad.mit.edu	37	chr12	93131328	93131328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttaatttttgtagtagatGgaaaatattaatttgttttt	7	1	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93131328	T	T	93131328	1	4	9	0	1	0	0	0	0	0	0	0	12170	1363	47	2		2	PLEKHG7	12	93131328	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	316430	93131328	40720567	13470	21621											
PLEKHG7	440107	broad.mit.edu	37	chr12	93135356	93135356	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcactggattttatttcCgtgctcacaaaggtaaactc	6	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93135356	A	A	93135356	2	1	9	1	0	0	0	0	0	0	0	1	12170	639	23	1		1	PLEKHG7	12	93135356	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4028	93135356	40716539	13471	21622											
PLEKHG7	440107	broad.mit.edu	37	chr12	93149679	93149679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagattatagtgtggccacCgctttgggatagagataaaa	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93149679	A	A	93149679	3	1	9	1	0	0	0	0	1	0	0	0	12170	652	23	1	591	1	PLEKHG7	12	93149679	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14323	93149679	40702216	13472	21623											
PLEKHG7	440107	broad.mit.edu	37	chr12	93163950	93163950	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatctttattcacattgccCgcagaatcctctgaaattta	4	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93163950	A	A	93163950	2	1	9	1	0	0	0	0	0	0	0	1	12170	639	23	1		1	PLEKHG7	12	93163950	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14271	93163950	40687945	13473	21624											
EEA1	8411	broad.mit.edu	37	chr12	93226305	93226305	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttgattaatttcactttGgagttgtaacccatgctgct	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93226305	T	T	93226305	3	4	9	1	0	0	0	0	1	0	0	0	4961	1357	47	2	3074	2	EEA1	12	93226305	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62355	93226305	40625590	13474	21625											
EEA1	8411	broad.mit.edu	37	chr12	93285491	93285491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgagagccaactctccCaggagtctggaacacaaaca	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93285491	A	A	93285491	3	1	9	1	0	0	0	0	1	0	0	0	4961	594	21	2	4316	2	EEA1	12	93285491	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59186	93285491	40566404	13475	21626											
NUDT4	11163	broad.mit.edu	37	chr12	93793047	93793047	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctggaaaagctaaagctGggttgttccccagccaatgg	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93793047	T	T	93793047	2	4	9	1	0	0	0	0	0	0	0	1	10836	1335	47	2		2	NUDT4	12	93793047	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	507556	93793047	40058848	13476	21627											
PLXNC1	10154	broad.mit.edu	37	chr12	94603446	94603446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggagcaaaaaagtgccCtaaaattcagataattcgaa	8	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94603446	A	A	94603446	3	1	9	1	0	0	0	0	1	0	0	0	12221	681	24	2	1538	2	PLXNC1	12	94603446	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	810399	94603446	39248449	13477	21628											
PLXNC1	10154	broad.mit.edu	37	chr12	94613785	94613785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttccccatatcttcccCgcacagactacagtgactat	4	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94613785	A	A	94613785	1	1	9	0	1	0	0	0	0	0	0	0	12221	667	23	1		1	PLXNC1	12	94613785	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10339	94613785	39238110	13478	21629											
PLXNC1	10154	broad.mit.edu	37	chr12	94634333	94634333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagccggaaagaaatgaaGgatgtgtgtatccagtttga	12	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94634333	T	T	94634333	3	4	9	1	0	0	0	0	1	0	0	0	12221	991	35	2	2235	2	PLXNC1	12	94634333	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20548	94634333	39217562	13479	21630											
PLXNC1	10154	broad.mit.edu	37	chr12	94634412	94634412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctctgccacattgttccCttatatttcctgctaccacc	4	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94634412	A	A	94634412	3	1	9	1	0	0	0	0	1	0	0	0	12221	681	24	2	2314	2	PLXNC1	12	94634412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	94634412	39217483	13480	21631											
PLXNC1	10154	broad.mit.edu	37	chr12	94641723	94641723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgcgggtttttagccccCagtttaaagagttcaaaagt	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94641723	A	A	94641723	2	1	9	1	0	0	0	0	0	0	0	1	12221	581	21	2		2	PLXNC1	12	94641723	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7311	94641723	39210172	13481	21632											
PLXNC1	10154	broad.mit.edu	37	chr12	94658864	94658864	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttccaaggagactgtcGgagagcccttctatttgctg	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94658864	T	T	94658864	4	4	9	1	0	0	0	0	0	1	0	0	12221	1117	39	1	3542	1	PLXNC1	12	94658864	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17141	94658864	39193031	13482	21633											
PLXNC1	10154	broad.mit.edu	37	chr12	94658914	94658914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaccagaaaattaacaaGggtcccgtggatgtaatcac	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94658914	T	T	94658914	3	4	9	1	0	0	0	0	1	0	0	0	12221	991	35	2	3592	2	PLXNC1	12	94658914	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	94658914	39192981	13483	21634											
CCDC41	51134	broad.mit.edu	37	chr12	94794806	94794806	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttataaacaaaattcgtactCactccaatagtcacttttac	2	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94794806	A	A	94794806	1	1	9	0	1	0	0	0	0	0	0	0	2840	841	29	3		3	CCDC41	12	94794806	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	135892	94794806	39057089	13484	21635											
CCDC41	51134	broad.mit.edu	37	chr12	94806180	94806180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaacattttctggaactcCgactgagaacctgtcaatcc	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94806180	A	A	94806180	2	1	9	1	0	0	0	0	0	0	0	1	2840	639	23	1		1	CCDC41	12	94806180	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11374	94806180	39045715	13485	21636											
CCDC41	51134	broad.mit.edu	37	chr12	94817918	94817918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatggggagagtgcagacCgagcaagcatcctgttgggg	18	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94817918	A	A	94817918	1	1	9	0	1	0	0	0	0	0	0	0	2840	667	23	1		1	CCDC41	12	94817918	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11738	94817918	39033977	13486	21637											
CCDC41	51134	broad.mit.edu	37	chr12	94818084	94818084	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgtcgtttctttggccCgccatcagcaaatttgcaaa	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94818084	A	A	94818084	1	1	9	0	1	0	0	0	0	0	0	0	2840	667	23	1		1	CCDC41	12	94818084	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	166	94818084	39033811	13487	21638											
NDUFA12	55967	broad.mit.edu	37	chr12	95365238	95365238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtaaggtgttgaaggtGggatccactcctgaatcttc	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95365238	T	T	95365238	3	4	9	1	0	0	0	0	1	0	0	0	10357	1348	47	2	25	2	NDUFA12	12	95365238	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	547154	95365238	38486657	13488	21639											
NR2C1	7181	broad.mit.edu	37	chr12	95416066	95416066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccattttcaaaatatgtGggataacactgtcaattcgt	7	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95416066	T	T	95416066	3	4	9	1	0	0	0	0	1	0	0	0	10717	1348	47	2	64	2	NR2C1	12	95416066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50828	95416066	38435829	13489	21640											
FGD6	55785	broad.mit.edu	37	chr12	95500774	95500774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttcagtttatacatccCagactgcactggtgttgtat	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95500774	A	A	95500774	3	1	9	1	0	0	0	0	1	0	0	0	5894	594	21	2	955	2	FGD6	12	95500774	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84708	95500774	38351121	13490	21641											
FGD6	55785	broad.mit.edu	37	chr12	95566331	95566331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagacaaatatcattccCaagcatagggagaggtcaag	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95566331	A	A	95566331	1	1	9	0	1	0	0	0	0	0	0	0	5894	609	21	2		2	FGD6	12	95566331	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	65557	95566331	38285564	13491	21642											
FGD6	55785	broad.mit.edu	37	chr12	95566507	95566507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcattctgttcctcctGggatgctcctgaactgcatt	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95566507	T	T	95566507	3	4	9	1	0	0	0	0	1	0	0	0	5894	1357	47	2	1913	2	FGD6	12	95566507	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	176	95566507	38285388	13492	21643											
FGD6	55785	broad.mit.edu	37	chr12	95603627	95603627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattccttttgcatttgaGgggcagaaactcccaggttt	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95603627	T	T	95603627	3	4	9	1	0	0	0	0	1	0	0	0	5894	1000	35	2	2939	2	FGD6	12	95603627	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37120	95603627	38248268	13493	21644											
FGD6	55785	broad.mit.edu	37	chr12	95604131	95604131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgggagttggaaattttGgggtatatggtactaaatga	14	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95604131	T	T	95604131	3	4	9	1	0	0	0	0	1	0	0	0	5894	1348	47	2	3443	2	FGD6	12	95604131	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	504	95604131	38247764	13494	21645											
VEZT	55591	broad.mit.edu	37	chr12	95656848	95656848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttgctccctggcaacccCtaatatttggtactgtccag	7	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95656848	A	A	95656848	3	1	9	1	0	0	0	0	1	0	0	0	17283	681	24	2	439	2	VEZT	12	95656848	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52717	95656848	38195047	13495	21646											
VEZT	55591	broad.mit.edu	37	chr12	95676291	95676291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagctatgagttctatcGgtactttgaaactcagcacc	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95676291	T	T	95676291	3	4	9	1	0	0	0	0	1	0	0	0	17283	1116	39	1	1229	1	VEZT	12	95676291	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19443	95676291	38175604	13496	21647											
VEZT	55591	broad.mit.edu	37	chr12	95676321	95676321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcagcaccagtcagtacCgcagtgtttatccaaaactc	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95676321	A	A	95676321	3	1	9	1	0	0	0	0	1	0	0	0	17283	652	23	1	1259	1	VEZT	12	95676321	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	95676321	38175574	13497	21648											
METAP2	10988	broad.mit.edu	37	chr12	95879719	95879719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcctaatggtgtatttccCaaaggacaagaatgcgaata	8	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95879719	A	A	95879719	2	1	9	1	0	0	0	0	0	0	0	1	9580	581	21	2		2	METAP2	12	95879719	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	203398	95879719	37972176	13498	21649											
METAP2	10988	broad.mit.edu	37	chr12	95889783	95889783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaattttctctttcaggtaGgattattgactgtgctttta	9	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95889783	T	T	95889783	3	4	9	1	0	0	0	0	1	0	0	0	9580	1000	35	2	802	2	METAP2	12	95889783	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10064	95889783	37962112	13499	21650											
CCDC38	120935	broad.mit.edu	37	chr12	96266153	96266153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttaccagcttttgaattGggttgaggccgtcatcctca	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96266153	T	T	96266153	3	4	9	1	0	0	0	0	1	0	0	0	2837	1348	47	2	339	2	CCDC38	12	96266153	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	376370	96266153	37585742	13500	21651											
CCDC38	120935	broad.mit.edu	37	chr12	96284556	96284556	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagtcctctgtctccacttTgagatggacacattcgcagg	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96284556	C	C	96284556	1	2	9	0	1	0	0	0	0	0	0	0	2837	1827	63	5		5	CCDC38	12	96284556	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	18403	96284556	37567339	13501	21652											
AMDHD1	144193	broad.mit.edu	37	chr12	96360234	96360234	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaagtctcacacacacGgatcgttggaagttggcaaa	12	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96360234	T	T	96360234	4	4	9	1	0	0	0	0	0	1	0	0	567	1117	39	1	1171	1	AMDHD1	12	96360234	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75678	96360234	37491661	13502	21653											
AMDHD1	144193	broad.mit.edu	37	chr12	96360257	96360257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttggaagttggcaaacaGggagatctcattatcatcaa	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96360257	T	T	96360257	3	4	9	1	0	0	0	0	1	0	0	0	567	991	35	2	1194	2	AMDHD1	12	96360257	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	96360257	37491638	13503	21654											
HAL	3034	broad.mit.edu	37	chr12	96386610	96386610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaattgatgttttctcCaagaaaagcaaactcctttt	5	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96386610	A	A	96386610	1	1	9	0	1	0	0	0	0	0	0	0	7013	609	21	2		2	HAL	12	96386610	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26353	96386610	37465285	13504	21655											
HAL	3034	broad.mit.edu	37	chr12	96387821	96387821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacgttaaagacttccacGggcaacaaaaatggccagag	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96387821	T	T	96387821	1	4	9	0	1	0	0	0	0	0	0	0	7013	1131	39	1		1	HAL	12	96387821	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1211	96387821	37464074	13505	21656											
LTA4H	4048	broad.mit.edu	37	chr12	96394809	96394809	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccagcattgcagtcacGggatgcatgcttgctttgtg	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96394809	T	T	96394809	2	4	9	1	0	0	0	0	0	0	0	1	9156	1103	39	1		1	LTA4H	12	96394809	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6988	96394809	37457086	13506	21657											
LTA4H	4048	broad.mit.edu	37	chr12	96397724	96397724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaataaagaagtatacCgtatcatttcaacaggattc	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96397724	A	A	96397724	1	1	9	0	1	0	0	0	0	0	0	0	9156	667	23	1		1	LTA4H	12	96397724	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2915	96397724	37454171	13507	21658											
ELK3	2004	broad.mit.edu	37	chr12	96641344	96641344	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccttgaacctgtcatcGggctccaagaccaagtctcc	9	15	2	2	rs115218295	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96641344	T	T	96641344	2	4	9	1	0	0	0	0	0	0	0	1	5102	1103	39	1		1	ELK3	12	96641344	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	243620	96641344	37210551	13508	21659											
CDK17	5128	broad.mit.edu	37	chr12	96674617	96674617	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaagaatttcgaaaaccCgggtccttttgcaactgaat	8	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96674617	A	A	96674617	2	1	9	1	0	0	0	0	0	0	0	1	3163	639	23	1		1	CDK17	12	96674617	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33273	96674617	37177278	13509	21660											
TMPO	7112	broad.mit.edu	37	chr12	98926779	98926779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagtacatacttctaaGggagacctacctagggagcc	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98926779	T	T	98926779	1	4	9	0	1	0	0	0	0	0	0	0	16360	991	35	2		2	TMPO	12	98926779	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2252162	98926779	34925116	13510	21661											
TMPO	7112	broad.mit.edu	37	chr12	98928051	98928051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataagctggcttccactccCtttaaaggtggaacattatt	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98928051	A	A	98928051	1	1	9	0	1	0	0	0	0	0	0	0	16360	668	24	2		2	TMPO	12	98928051	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1272	98928051	34923844	13511	21662											
TMPO	7112	broad.mit.edu	37	chr12	98938065	98938065	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtggatcttcaaaaggcGgacctctgcaggcattaact	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98938065	T	T	98938065	4	4	9	1	0	0	0	0	0	1	0	0	16360	1117	39	1	2263	1	TMPO	12	98938065	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10014	98938065	34913830	13512	21663											
SLC25A3	5250	broad.mit.edu	37	chr12	98993848	98993848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgtggttcctaagcccCgcagtgaatgttcaaagcca	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98993848	A	A	98993848	3	1	9	1	0	0	0	0	1	0	0	0	14607	652	23	1	904	1	SLC25A3	12	98993848	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55783	98993848	34858047	13513	21664											
APAF1	317	broad.mit.edu	37	chr12	99042132	99042132	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagagagaaagatctgaGggaagatggatgcaaaagct	14	4	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99042132	T	T	99042132	1	4	9	1	0	0	0	0	0	0	0	0	757	1015	35	2		2	APAF1	12	99042132	Translation_Start_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	48284	99042132	34809763	13514	21665											
APAF1	317	broad.mit.edu	37	chr12	99119294	99119294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagtaccctgctggcaacGggagatgacaatggagaaat	13	8	0	3	rs149589840		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99119294	T	T	99119294	2	4	9	1	0	0	0	0	0	0	0	1	757	1103	39	1		1	APAF1	12	99119294	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	77162	99119294	34732601	13515	21666											
APAF1	317	broad.mit.edu	37	chr12	99120994	99120994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttcatttgtgtgctcCgctttcagaagaaggagctg	11	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99120994	A	A	99120994	3	1	9	1	0	0	0	0	1	0	0	0	757	652	23	1	3598	1	APAF1	12	99120994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1700	99120994	34730901	13516	21667											
ANKS1B	56899	broad.mit.edu	37	chr12	99222981	99222981	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctctccagttttgatcGgggaatatcatcaaagtagt	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99222981	T	T	99222981	2	4	9	1	0	0	0	0	0	0	0	1	689	1124	39	1		1	ANKS1B	12	99222981	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101987	99222981	34628914	13517	21668											
SLC17A8	246213	broad.mit.edu	37	chr12	100751218	100751218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaaattctgaaacctGggaaggaaggagtgaagaac	12	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100751218	T	T	100751218	3	4	9	1	0	0	0	0	1	0	0	0	14536	1348	47	2	51	2	SLC17A8	12	100751218	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1528237	100751218	33100677	13518	21669											
SLC17A8	246213	broad.mit.edu	37	chr12	100774701	100774701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatggtcaacaatagcacCgtatatgttgatggaaaacc	9	7	1	1	rs142295914	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100774701	A	A	100774701	2	1	9	1	0	0	0	0	0	0	0	1	14536	639	23	1		1	SLC17A8	12	100774701	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23483	100774701	33077194	13519	21670											
GAS2L3	283431	broad.mit.edu	37	chr12	100972762	100972762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaatcgaaaaggcatcCgttacctcactaatgacctc	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100972762	A	A	100972762	1	1	9	0	1	0	0	0	0	0	0	0	6310	667	23	1		1	GAS2L3	12	100972762	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	198061	100972762	32879133	13520	21671											
GAS2L3	283431	broad.mit.edu	37	chr12	101016131	101016131	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatctgaaggacggtacCgactaggggataaaatactc	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101016131	A	A	101016131	2	1	9	1	0	0	0	0	0	0	0	1	6310	644	23	1		1	GAS2L3	12	101016131	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43369	101016131	32835764	13521	21672											
ANO4	121601	broad.mit.edu	37	chr12	101368645	101368645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaatctattacctgcccCgccgttacaagttcatgagc	7	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101368645	A	A	101368645	3	1	9	1	0	0	0	0	1	0	0	0	699	652	23	1	493	1	ANO4	12	101368645	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	352514	101368645	32483250	13522	21673											
ANO4	121601	broad.mit.edu	37	chr12	101381221	101381221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagggcctggaatgtgtGgtatgatagttgtggctctg	17	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101381221	T	T	101381221	1	4	9	0	1	0	0	0	0	0	0	0	699	1363	47	2		2	ANO4	12	101381221	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12576	101381221	32470674	13523	21674											
ANO4	121601	broad.mit.edu	37	chr12	101381289	101381289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgctgacatgctgtaccCtttggtcttgccttccatgt	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101381289	A	A	101381289	1	1	9	0	1	0	0	0	0	0	0	0	699	696	24	2		2	ANO4	12	101381289	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	101381289	32470606	13524	21675											
ANO4	121601	broad.mit.edu	37	chr12	101430824	101430824	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atatttgttttgaacattgtGagtattcaaactctgtatta	6	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101430824	T	T	101430824	1	4	9	0	1	0	0	0	0	0	0	0	699	1305	45	3		3	ANO4	12	101430824	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49535	101430824	32421071	13525	21676											
UTP20	27340	broad.mit.edu	37	chr12	101680143	101680143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagatggatttctaccCacactttccagagttttttt	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101680143	A	A	101680143	3	1	9	1	0	0	0	0	1	0	0	0	17226	594	21	2	389	2	UTP20	12	101680143	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	249319	101680143	32171752	13526	21677											
UTP20	27340	broad.mit.edu	37	chr12	101748913	101748913	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacggtaataaatttattcgGggtccagcaggtctgtgtga	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101748913	T	T	101748913	1	4	9	0	1	0	0	0	0	0	0	0	17226	1247	43	2		2	UTP20	12	101748913	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	68770	101748913	32102982	13527	21678											
UTP20	27340	broad.mit.edu	37	chr12	101763545	101763545	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgggtcttgaggttccCgctaccttccatagaaacaa	8	12	2	2	rs142621773		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101763545	A	A	101763545	3	1	9	1	0	0	0	0	1	0	0	0	17226	652	23	1	6625	1	UTP20	12	101763545	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14632	101763545	32088350	13528	21679											
SPIC	121599	broad.mit.edu	37	chr12	101876650	101876650	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaccagctggtacaaccCactcttctccagcaaaaggg	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101876650	A	A	101876650	2	1	9	1	0	0	0	0	0	0	0	1	15169	581	21	2		2	SPIC	12	101876650	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113105	101876650	31975245	13529	21680											
MYBPC1	4604	broad.mit.edu	37	chr12	102021559	102021559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttcaggtttgggtagtcGggccctggagagaaaagatt	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102021559	T	T	102021559	1	4	9	0	1	0	0	0	0	0	0	0	10105	1116	39	1		1	MYBPC1	12	102021559	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	144909	102021559	31830336	13530	21681											
MYBPC1	4604	broad.mit.edu	37	chr12	102045191	102045191	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagcgagccaggtgaccCgcaagtgaggtttggtccca	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102045191	G	G	102045191	1	3	9	0	1	0	0	0	0	0	0	0	10105	667	23	4		4	MYBPC1	12	102045191	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23632	102045191	31806704	13531	21682											
MYBPC1	4604	broad.mit.edu	37	chr12	102053695	102053695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctttgtcctttccttcCatttccttcctttgtctttc	2	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102053695	A	A	102053695	1	1	9	0	1	0	0	0	0	0	0	0	10105	609	21	2		2	MYBPC1	12	102053695	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8504	102053695	31798200	13532	21683											
MYBPC1	4604	broad.mit.edu	37	chr12	102060587	102060587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgccaggtaaagtattcCgtgaagctctcaaattttct	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102060587	A	A	102060587	1	1	9	0	1	0	0	0	0	0	0	0	10105	667	23	1		1	MYBPC1	12	102060587	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6892	102060587	31791308	13533	21684											
SYCP3	50511	broad.mit.edu	37	chr12	102122733	102122733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatggattgaagagacttcCgaacacttgctatctcttgc	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102122733	A	A	102122733	3	1	9	1	0	0	0	0	1	0	0	0	15553	652	23	1	31	1	SYCP3	12	102122733	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62146	102122733	31729162	13534	21685											
GNPTAB	79158	broad.mit.edu	37	chr12	102164744	102164744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatcttaacctttgatttGggctgtaaaagcttctgtgc	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102164744	T	T	102164744	1	4	9	0	1	0	0	0	0	0	0	0	6609	1363	47	2		2	GNPTAB	12	102164744	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42011	102164744	31687151	13535	21686											
DRAM1	55332	broad.mit.edu	37	chr12	102291647	102291647	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccctttgccagtgatacGggaacaacacctccagagag	9	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102291647	T	T	102291647	2	4	9	1	0	0	0	0	0	0	0	1	4793	1103	39	1		1	DRAM1	12	102291647	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	126903	102291647	31560248	13536	21687											
DRAM1	55332	broad.mit.edu	37	chr12	102301991	102301991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgccagtggttcatgacGggggcgctcttttggccttt	14	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102301991	T	T	102301991	3	4	9	1	0	0	0	0	1	0	0	0	4793	1116	39	1	384	1	DRAM1	12	102301991	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10344	102301991	31549904	13537	21688											
NUP37	79023	broad.mit.edu	37	chr12	102471230	102471230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagataaaatagcctgttGggccaaaagatcataaaacc	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102471230	T	T	102471230	3	4	9	1	0	0	0	0	1	0	0	0	10859	1357	47	2	404	2	NUP37	12	102471230	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	169239	102471230	31380665	13538	21689											
PMCH	5367	broad.mit.edu	37	chr12	102590450	102590450	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacttgccaacaaggtcGgtagactcttcccagcatac	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102590450	T	T	102590450	2	4	9	1	0	0	0	0	0	0	0	1	12226	1124	39	1		1	PMCH	12	102590450	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	119220	102590450	31261445	13539	21690											
IGF1	3479	broad.mit.edu	37	chr12	102869478	102869478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatccaccagctcagcccCgcagagcgtctccggtccag	10	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102869478	A	A	102869478	3	1	9	1	0	0	0	0	1	0	0	0	7640	652	23	1	500	1	IGF1	12	102869478	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	279028	102869478	30982417	13540	21691											
C12orf42	374470	broad.mit.edu	37	chr12	103695884	103695884	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaacaattccctcgcagcGgtcaatgtaagtgagcattc	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103695884	T	T	103695884	1	4	9	0	1	0	0	0	0	0	0	0	1701	1131	39	1		1	C12orf42	12	103695884	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	826406	103695884	30156011	13541	21692											
C12orf42	374470	broad.mit.edu	37	chr12	103699777	103699777	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcttgggactgctcaaGggctggcccttaggtcttgt	12	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103699777	T	T	103699777	2	4	9	1	0	0	0	0	0	0	0	1	1701	987	35	2		2	C12orf42	12	103699777	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3893	103699777	30152118	13542	21693											
STAB2	55576	broad.mit.edu	37	chr12	103988144	103988144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgcattgctcttatcgtGggttaatgtcctctctttac	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103988144	T	T	103988144	1	4	9	0	1	0	0	0	0	0	0	0	15356	1363	47	2		2	STAB2	12	103988144	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	288367	103988144	29863751	13543	21694											
STAB2	55576	broad.mit.edu	37	chr12	104054132	104054132	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcggaagcttctggaactCgtcagataccacattgtccc	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104054132	A	A	104054132	2	1	9	1	0	0	0	0	0	0	0	1	15356	871	31	3		3	STAB2	12	104054132	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65988	104054132	29797763	13544	21695											
STAB2	55576	broad.mit.edu	37	chr12	104056730	104056730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcctccctccattgtccCgattctgccccatcgatgtg	6	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104056730	A	A	104056730	3	1	9	1	0	0	0	0	1	0	0	0	15356	652	23	1	2046	1	STAB2	12	104056730	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2598	104056730	29795165	13545	21696											
STAB2	55576	broad.mit.edu	37	chr12	104121126	104121126	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcctttgatgaggaagctCgggtgagcatgagactgtgg	16	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104121126	A	A	104121126	2	1	9	1	0	0	0	0	0	0	0	1	15356	875	31	3		3	STAB2	12	104121126	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64396	104121126	29730769	13546	21697											
STAB2	55576	broad.mit.edu	37	chr12	104152924	104152924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcagaccttgtctgggcGggacatcgagcaccacctcg	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104152924	T	T	104152924	3	4	9	1	0	0	0	0	1	0	0	0	15356	1116	39	1	7379	1	STAB2	12	104152924	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31798	104152924	29698971	13547	21698											
STAB2	55576	broad.mit.edu	37	chr12	104155080	104155080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctcatttccctagacGgagaccaggtttgttgatgg	10	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104155080	T	T	104155080	2	4	9	1	0	0	0	0	0	0	0	1	15356	1103	39	1		1	STAB2	12	104155080	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2156	104155080	29696815	13548	21699											
STAB2	55576	broad.mit.edu	37	chr12	104156135	104156135	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgccttggctgcttactcCtactttcggataaaccggag	10	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104156135	A	A	104156135	2	1	9	1	0	0	0	0	0	0	0	1	15356	668	24	2		2	STAB2	12	104156135	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1055	104156135	29695760	13549	21700											
STAB2	55576	broad.mit.edu	37	chr12	104157272	104157272	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtctttccaaacagtcGgaagaggacattaatgttgc	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104157272	T	T	104157272	2	4	9	1	0	0	0	0	0	0	0	1	15356	1103	39	1		1	STAB2	12	104157272	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1137	104157272	29694623	13550	21701											
NT5DC3	51559	broad.mit.edu	37	chr12	104179176	104179176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtttgaatgtattgctcCgtgttcatgattttgagctc	10	6	1	3	rs61752308		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104179176	A	A	104179176	2	1	9	1	0	0	0	0	0	0	0	1	10787	639	23	1		1	NT5DC3	12	104179176	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21904	104179176	29672719	13551	21702											
NT5DC3	51559	broad.mit.edu	37	chr12	104182659	104182659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacttatggattttatccCagagtaagacacctttctca	6	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104182659	A	A	104182659	3	1	9	1	0	0	0	0	1	0	0	0	10787	595	21	2	608	2	NT5DC3	12	104182659	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3483	104182659	29669236	13552	21703											
NT5DC3	51559	broad.mit.edu	37	chr12	104187044	104187044	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataactcatccctttgtccCtagggcaacaagtcagccag	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104187044	A	A	104187044	5	1	9	1	0	0	0	0	0	0	1	0	10787	695	24	2	753	2	NT5DC3	12	104187044	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	4385	104187044	29664851	13553	21704											
HSP90B1	7184	broad.mit.edu	37	chr12	104336950	104336950	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgtattcaggcccttccCgaatttgatgggaagaggtt	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104336950	A	A	104336950	2	1	9	1	0	0	0	0	0	0	0	1	7472	639	23	1		1	HSP90B1	12	104336950	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	149906	104336950	29514945	13554	21705											
TDG	6996	broad.mit.edu	37	chr12	104374685	104374685	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatagattggcataaacccGggactaatggctgcttacaa	9	8	0	1	rs76647728	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104374685	T	T	104374685	2	4	9	1	0	0	0	0	0	0	0	1	15847	1103	39	1		1	TDG	12	104374685	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37735	104374685	29477210	13555	21706											
TDG	6996	broad.mit.edu	37	chr12	104379455	104379455	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatatggtggtgcttacGgagaaaatccatgcagcagt	12	8	0	1	rs79676424		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104379455	T	T	104379455	4	4	9	1	0	0	0	0	0	1	0	0	15847	1117	39	1	1073	1	TDG	12	104379455	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4770	104379455	29472440	13556	21707											
GLT8D2	83468	broad.mit.edu	37	chr12	104391221	104391221	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtgttcttggcagttagcGagagtaccttgtacaattac	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104391221	T	T	104391221	1	4	9	0	1	0	0	0	0	0	0	0	6534	1073	37	3		3	GLT8D2	12	104391221	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11766	104391221	29460674	13557	21708											
HCFC2	29915	broad.mit.edu	37	chr12	104473326	104473326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttctccaagagaatccCacacagctgttatatattgc	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104473326	A	A	104473326	3	1	9	1	0	0	0	0	1	0	0	0	7059	594	21	2	591	2	HCFC2	12	104473326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82105	104473326	29378569	13558	21709											
NFYB	4801	broad.mit.edu	37	chr12	104514222	104514222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataacattttgttgttgacCgtctgtggttattaagccag	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104514222	A	A	104514222	3	1	9	1	0	0	0	0	1	0	0	0	10485	652	23	1	84	1	NFYB	12	104514222	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40896	104514222	29337673	13559	21710											
NFYB	4801	broad.mit.edu	37	chr12	104529248	104529248	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaaatactgtcagaacCgtgttgtcagtggtgctgaa	11	7	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104529248	A	A	104529248	1	1	9	0	1	0	0	0	0	0	0	0	10485	667	23	1		1	NFYB	12	104529248	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	15026	104529248	29322647	13560	21711											
TXNRD1	7296	broad.mit.edu	37	chr12	104681044	104681044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggcgtgtctgagcagacGgggaggcttttccaaaccca	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104681044	T	T	104681044	1	4	9	0	1	0	0	0	0	0	0	0	16933	1131	39	1		1	TXNRD1	12	104681044	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	151796	104681044	29170851	13561	21712											
TXNRD1	7296	broad.mit.edu	37	chr12	104682767	104682767	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcggaaaccgatctgccCgttgtgtttgtgaaacagag	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104682767	A	A	104682767	2	1	9	1	0	0	0	0	0	0	0	1	16933	639	23	1		1	TXNRD1	12	104682767	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1723	104682767	29169128	13562	21713											
EID3	493861	broad.mit.edu	37	chr12	104698090	104698090	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgactttctgtttctgttCgtgggtctgaattggatgga	13	5	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104698090	A	A	104698090	3	1	9	1	0	0	0	0	1	0	0	0	5029	883	31	3	380	3	EID3	12	104698090	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15323	104698090	29153805	13563	21714											
EID3	493861	broad.mit.edu	37	chr12	104698277	104698277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagccccgacttgaacacCagaaaaaagttcgcaagatg	8	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104698277	A	A	104698277	3	1	9	1	0	0	0	0	1	0	0	0	5029	595	21	2	567	2	EID3	12	104698277	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	187	104698277	29153618	13564	21715											
TXNRD1	7296	broad.mit.edu	37	chr12	104714899	104714899	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccttgccttactgcccGggtaagaccctggttgttgg	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104714899	T	T	104714899	2	4	9	1	0	0	0	0	0	0	0	1	16933	1103	39	1		1	TXNRD1	12	104714899	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16622	104714899	29136996	13565	21716											
SLC41A2	84102	broad.mit.edu	37	chr12	105199004	105199004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggctaacagagctgtccCgagcagatcacccaatgctg	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105199004	A	A	105199004	3	1	9	1	0	0	0	0	1	0	0	0	14744	652	23	1	77	1	SLC41A2	12	105199004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	484105	105199004	28652891	13566	21717											
SLC41A2	84102	broad.mit.edu	37	chr12	105199099	105199099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccatccagtcagcaatcCacagcaaggtaaatacctag	8	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105199099	A	A	105199099	3	1	9	1	0	0	0	0	1	0	0	0	14744	595	21	2	172	2	SLC41A2	12	105199099	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	105199099	28652796	13567	21718											
ALDH1L2	160428	broad.mit.edu	37	chr12	105420356	105420356	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagccagattgtttaactcCgccaaatggggccgccacat	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105420356	A	A	105420356	4	1	9	1	0	0	0	0	0	1	0	0	495	661	23	1	96	1	ALDH1L2	12	105420356	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	221257	105420356	28431539	13568	21719											
ALDH1L2	160428	broad.mit.edu	37	chr12	105425512	105425512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattccaactgaagaaggcGggcacccggtaaacccccac	9	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105425512	T	T	105425512	1	4	9	0	1	0	0	0	0	0	0	0	495	1131	39	1		1	ALDH1L2	12	105425512	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5156	105425512	28426383	13569	21720											
ALDH1L2	160428	broad.mit.edu	37	chr12	105440654	105440654	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacacaactcatgattcactCagaggcactctccttatctt	4	13	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105440654	A	A	105440654	1	1	9	0	1	0	0	0	0	0	0	0	495	841	29	3		3	ALDH1L2	12	105440654	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15142	105440654	28411241	13570	21721											
ALDH1L2	160428	broad.mit.edu	37	chr12	105454843	105454843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgcttaaaattccagccCagatgacctacacaaaaagg	6	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105454843	A	A	105454843	3	1	9	1	0	0	0	0	1	0	0	0	495	595	21	2	1776	2	ALDH1L2	12	105454843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14189	105454843	28397052	13571	21722											
KIAA1033	23325	broad.mit.edu	37	chr12	105508047	105508047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcataaagactgaaaacaaGgtacagaatcctaaatctaa	5	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105508047	T	T	105508047	3	4	9	1	0	0	0	0	1	0	0	0	8276	1014	35	2	265	2	KIAA1033	12	105508047	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53204	105508047	28343848	13572	21723											
KIAA1033	23325	broad.mit.edu	37	chr12	105540964	105540964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgagtgggtaatagaccCgtttaatagcttggaacgtg	14	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105540964	A	A	105540964	1	1	9	0	1	0	0	0	0	0	0	0	8276	667	23	1		1	KIAA1033	12	105540964	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32917	105540964	28310931	13573	21724											
NUAK1	9891	broad.mit.edu	37	chr12	106477704	106477704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcccggtggaccacacCgttctgaaatgagaagacaa	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106477704	A	A	106477704	3	1	9	1	0	0	0	0	1	0	0	0	10807	652	23	1	1484	1	NUAK1	12	106477704	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	936740	106477704	27374191	13574	21725											
CKAP4	10970	broad.mit.edu	37	chr12	106632920	106632920	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgttggtttctattttgaccGagtatgcaaccaaactgtcc	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106632920	T	T	106632920	4	4	9	1	0	0	0	0	0	1	0	0	3475	1059	37	3	121	3	CKAP4	12	106632920	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	155216	106632920	27218975	13575	21726											
CKAP4	10970	broad.mit.edu	37	chr12	106633455	106633455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccgtcctccttcggccCgtgggaatcggacttcagct	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106633455	A	A	106633455	3	1	9	1	0	0	0	0	1	0	0	0	3475	652	23	1	656	1	CKAP4	12	106633455	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	535	106633455	27218440	13576	21727											
POLR3B	55703	broad.mit.edu	37	chr12	106763120	106763121	+	Missense_Mutation	DNP	CC	AA	AA													atgtaactagaccagtgtccCctcatgaggtaattatgaac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	106763121	AA	AA	106763120	3	1	9	1	0	0	0	0	1	0	0	0	12324	623	22	2	313	2	POLR3B	12	106763120	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	129665	106763120	27088775	13577	21728											
POLR3B	55703	broad.mit.edu	37	chr12	106889755	106889755	+	Intron	SNP	G	T	T													gtggaaatagagatagcagcGgggagatcccaattaagtac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106889755	T	T	106889755	1	4	9	0	1	0	0	0	0	0	0	0	12324	1131	39	1		1	POLR3B	12	106889755	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	126635	106889755	26962140	13578	21729	145	2									
POLR3B	55703	broad.mit.edu	37	chr12	106889765	106889765	+	Intron	SNP	C	A	A													agatagcagcggggagatccCaattaagtactgtattcttc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106889765	A	A	106889765	1	1	9	0	1	0	0	0	0	0	0	0	12324	609	21	2		2	POLR3B	12	106889765	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	106889765	26962130	13579	21730	145	2									
RFX4	5992	broad.mit.edu	37	chr12	106977125	106977125	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggttactggaggaaccCgacatggattccacaggtta	13	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106977125	A	A	106977125	2	1	9	1	0	0	0	0	0	0	0	1	13373	639	23	1		1	RFX4	12	106977125	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87360	106977125	26874770	13580	21731											
RFX4	5992	broad.mit.edu	37	chr12	107075819	107075819	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagaagactcgggaccCgaggacagtcaaagtaagca	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107075819	A	A	107075819	2	1	9	1	0	0	0	0	0	0	0	1	13373	644	23	1		1	RFX4	12	107075819	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	98694	107075819	26776076	13581	21732											
RFX4	5992	broad.mit.edu	37	chr12	107144484	107144484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaccagcatcctcacccCatgcagagccagtatccggc	9	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107144484	A	A	107144484	2	1	9	1	0	0	0	0	0	0	0	1	13373	581	21	2		2	RFX4	12	107144484	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68665	107144484	26707411	13582	21733											
RIC8B	55188	broad.mit.edu	37	chr12	107236426	107236426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggatgttctcatttgtcCgttaacccatgaagaaacag	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107236426	A	A	107236426	3	1	9	1	0	0	0	0	1	0	0	0	13465	652	23	1	914	1	RIC8B	12	107236426	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	91942	107236426	26615469	13583	21734											
RIC8B	55188	broad.mit.edu	37	chr12	107237687	107237687	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttattaaccgaatgttccCgagcccatcgaaacatccga	7	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107237687	A	A	107237687	2	1	9	1	0	0	0	0	0	0	0	1	13465	644	23	1		1	RIC8B	12	107237687	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1261	107237687	26614208	13584	21735											
RIC8B	55188	broad.mit.edu	37	chr12	107279703	107279703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagttgcttaaaccaatGggactaaaacctgatgggac	12	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107279703	T	T	107279703	3	4	9	1	0	0	0	0	1	0	0	0	13465	1348	47	2	1507	2	RIC8B	12	107279703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42016	107279703	26572192	13585	21736											
RIC8B	55188	broad.mit.edu	37	chr12	107279759	107279759	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaagcactcaaccagtactCtgtcatcgaagagaccagct	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107279759	A	A	107279759	3	1	9	1	0	0	0	0	1	0	0	0	13465	913	32	3	1563	3	RIC8B	12	107279759	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	107279759	26572136	13586	21737											
C12orf23	90488	broad.mit.edu	37	chr12	107364959	107364959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatcttcagtgttacaaaGggagctgttggtgccaccat	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107364959	T	T	107364959	3	4	9	1	0	0	0	0	1	0	0	0	1690	991	35	2	147	2	C12orf23	12	107364959	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85200	107364959	26486936	13587	21738											
MTERFD3	80298	broad.mit.edu	37	chr12	107372150	107372150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactgccagagttttctctGggtgttaacagcggttggac	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107372150	T	T	107372150	3	4	9	1	0	0	0	0	1	0	0	0	10015	1357	47	2	818	2	MTERFD3	12	107372150	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7191	107372150	26479745	13588	21739											
CRY1	1407	broad.mit.edu	37	chr12	107391132	107391132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccatgaagcctccattccCattaggattagaaggtactg	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107391132	A	A	107391132	3	1	9	1	0	0	0	0	1	0	0	0	3935	594	21	2	247	2	CRY1	12	107391132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18982	107391132	26460763	13589	21740											
PWP1	11137	broad.mit.edu	37	chr12	108104181	108104181	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcctgttctctctctaGggagttctcttctgttcttc	6	12	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108104181	T	T	108104181	5	4	9	1	0	0	0	0	0	0	1	0	12951	1014	35	2	1344	2	PWP1	12	108104181	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	713049	108104181	25747714	13590	21741											
PWP1	11137	broad.mit.edu	37	chr12	108104258	108104258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaaaaagaagggcttcGggtctgggatataagcacag	14	6	2	1	rs117963602	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108104258	T	T	108104258	3	4	9	1	0	0	0	0	1	0	0	0	12951	1116	39	1	1421	1	PWP1	12	108104258	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77	108104258	25747637	13591	21742											
PRDM4	11108	broad.mit.edu	37	chr12	108128210	108128210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttcacagacataatccCgttttccttcatgagaattg	5	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108128210	A	A	108128210	3	1	9	1	0	0	0	0	1	0	0	0	12565	652	23	1	226	1	PRDM4	12	108128210	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23952	108128210	25723685	13592	21743											
WSCD2	9671	broad.mit.edu	37	chr12	108634115	108634115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcctcacctctggctgcGggaagggtttaaaggtgagc	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108634115	T	T	108634115	1	4	9	0	1	0	0	0	0	0	0	0	17534	1131	39	1		1	WSCD2	12	108634115	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	505905	108634115	25217780	13593	21744											
SART3	9733	broad.mit.edu	37	chr12	108919885	108919885	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaacctaccttaaaatcGgggtttttgctcttatccac	5	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108919885	T	T	108919885	2	4	9	1	0	0	0	0	0	0	0	1	13959	1103	39	1		1	SART3	12	108919885	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	285770	108919885	24932010	13594	21745											
SART3	9733	broad.mit.edu	37	chr12	108920248	108920248	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcagcacatttcccagcGggccctgctgctacttctac	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108920248	T	T	108920248	2	4	9	1	0	0	0	0	0	0	0	1	13959	1103	39	1		1	SART3	12	108920248	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	363	108920248	24931647	13595	21746											
SART3	9733	broad.mit.edu	37	chr12	108929204	108929204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggtcatgatgctatccCagagttcccgagctttctgc	9	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108929204	A	A	108929204	3	1	9	1	0	0	0	0	1	0	0	0	13959	595	21	2	1436	2	SART3	12	108929204	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8956	108929204	24922691	13596	21747											
SART3	9733	broad.mit.edu	37	chr12	108930256	108930256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctattaaacaatgatGgatgaaagtgctagatgtgt	12	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108930256	T	T	108930256	1	4	9	0	1	0	0	0	0	0	0	0	13959	1363	47	2		2	SART3	12	108930256	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1052	108930256	24921639	13597	21748											
SART3	9733	broad.mit.edu	37	chr12	108931891	108931891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccatggccaagaggtacCgactccataaggcaactgtc	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108931891	A	A	108931891	3	1	9	1	0	0	0	0	1	0	0	0	13959	652	23	1	1788	1	SART3	12	108931891	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1635	108931891	24920004	13598	21749											
CORO1C	23603	broad.mit.edu	37	chr12	109095013	109095013	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtcacacgagaaacccGgatgtcatcatagcactggt	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109095013	T	T	109095013	2	4	9	1	0	0	0	0	0	0	0	1	3787	1115	39	1		1	CORO1C	12	109095013	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	163122	109095013	24756882	13599	21750											
SSH1	54434	broad.mit.edu	37	chr12	109200060	109200060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctctgacctgcaatgaaGggaggagttgtcttacctct	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109200060	T	T	109200060	1	4	9	0	1	0	0	0	0	0	0	0	15302	1015	35	2		2	SSH1	12	109200060	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	105047	109200060	24651835	13600	21751											
SSH1	54434	broad.mit.edu	37	chr12	109203438	109203438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctaagaaaatatttctaGggagttaaaagtccctaaaa	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109203438	T	T	109203438	1	4	9	0	1	0	0	0	0	0	0	0	15302	1015	35	2		2	SSH1	12	109203438	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3378	109203438	24648457	13601	21752											
DAO	1610	broad.mit.edu	37	chr12	109281196	109281196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcccagctcagggcattGggtgatcgaactcttcatga	11	10	3	2	rs73410954	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109281196	T	T	109281196	1	4	9	0	1	0	0	0	0	0	0	0	4264	1363	47	2		2	DAO	12	109281196	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	77758	109281196	24570699	13602	21753											
DAO	1610	broad.mit.edu	37	chr12	109281226	109281226	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcttcatgacccttccagGgactggagccaacagacctt	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109281226	T	T	109281226	2	4	9	1	0	0	0	0	0	0	0	1	4264	1246	43	2		2	DAO	12	109281226	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	109281226	24570669	13603	21754											
DAO	1610	broad.mit.edu	37	chr12	109281339	109281339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttccatgaagccattcCggtgggtgaacagttcttga	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109281339	A	A	109281339	3	1	9	1	0	0	0	0	1	0	0	0	4264	666	23	1	314	1	DAO	12	109281339	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	113	109281339	24570556	13604	21755											
USP30	84749	broad.mit.edu	37	chr12	109494638	109494638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggtctgtagacttgaccCagatccctgttatctgaaaa	8	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109494638	A	A	109494638	1	1	9	0	1	0	0	0	0	0	0	0	17188	609	21	2		2	USP30	12	109494638	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	213299	109494638	24357257	13605	21756											
USP30	84749	broad.mit.edu	37	chr12	109495757	109495757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggccttgttaatttaGggaacacctgcttcatgaac	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109495757	T	T	109495757	3	4	9	1	0	0	0	0	1	0	0	0	17188	1000	35	2	230	2	USP30	12	109495757	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1119	109495757	24356138	13606	21757											
USP30	84749	broad.mit.edu	37	chr12	109519796	109519796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctcatcagaatcagtgcGggatgttgtgtgtgacaact	11	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109519796	T	T	109519796	3	4	9	1	0	0	0	0	1	0	0	0	17188	1116	39	1	873	1	USP30	12	109519796	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24039	109519796	24332099	13607	21758											
ALKBH2	121642	broad.mit.edu	37	chr12	109526161	109526161	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcggcagcctgaccacCgccaccctcctggaggggct	13	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109526161	A	A	109526161	2	1	9	1	0	0	0	0	0	0	0	1	527	639	23	1		1	ALKBH2	12	109526161	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6365	109526161	24325734	13608	21759											
ALKBH2	121642	broad.mit.edu	37	chr12	109526248	109526248	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaggagacagaggcaatGgggctcccaggggccagttc	16	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109526248	T	T	109526248	2	4	9	1	0	0	0	0	0	0	0	1	527	1335	47	2		2	ALKBH2	12	109526248	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	87	109526248	24325647	13609	21760											
ALKBH2	121642	broad.mit.edu	37	chr12	109526292	109526292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcatctcggtgctcccCgatgtggtcacagccatctt	8	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109526292	A	A	109526292	3	1	9	1	0	0	0	0	1	0	0	0	527	652	23	1	284	1	ALKBH2	12	109526292	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	109526292	24325603	13610	21761											
UNG	7374	broad.mit.edu	37	chr12	109547697	109547697	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtatagagggttctttGgatgtagacacttttcaaag	11	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109547697	T	T	109547697	4	4	9	1	0	0	0	0	0	1	0	0	17125	1349	47	2	996	2	UNG	12	109547697	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21405	109547697	24304198	13611	21762											
ACACB	32	broad.mit.edu	37	chr12	109605719	109605719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcttattgccaacaacGggattgccgccgtgaagtgc	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109605719	T	T	109605719	3	4	9	1	0	0	0	0	1	0	0	0	107	1116	39	1	815	1	ACACB	12	109605719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58022	109605719	24246176	13612	21763											
ACACB	32	broad.mit.edu	37	chr12	109629452	109629452	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaaggaactgtccatcCgaggcgactttaggactacc	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109629452	A	A	109629452	2	1	9	1	0	0	0	0	0	0	0	1	107	644	23	1		1	ACACB	12	109629452	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23733	109629452	24222443	13613	21764											
ACACB	32	broad.mit.edu	37	chr12	109629472	109629472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggcgactttaggactacCgtggaatacctcattaacct	9	11	1	0	rs145205732	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109629472	A	A	109629472	2	1	9	1	0	0	0	0	0	0	0	1	107	639	23	1		1	ACACB	12	109629472	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	109629472	24222423	13614	21765											
ACACB	32	broad.mit.edu	37	chr12	109639334	109639334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctctgggtgtcaatccCggtgggctctgtactatttc	13	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109639334	A	A	109639334	1	1	9	0	1	0	0	0	0	0	0	0	107	667	23	1		1	ACACB	12	109639334	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9862	109639334	24212561	13615	21766											
ACACB	32	broad.mit.edu	37	chr12	109661703	109661703	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtcgtgtgcatggcgtcCttggaggtaagcaggagagg	17	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109661703	A	A	109661703	2	1	9	1	0	0	0	0	0	0	0	1	107	668	24	2		2	ACACB	12	109661703	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22369	109661703	24190192	13616	21767											
ACACB	32	broad.mit.edu	37	chr12	109679029	109679029	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcatcaccaatgagtcGggctactacctggacatcag	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109679029	T	T	109679029	2	4	9	1	0	0	0	0	0	0	0	1	107	1103	39	1		1	ACACB	12	109679029	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17326	109679029	24172866	13617	21768											
ACACB	32	broad.mit.edu	37	chr12	109679099	109679099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaatgtaaggctggccCgcgccgtgggggtctaagtc	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109679099	A	A	109679099	1	1	9	0	1	0	0	0	0	0	0	0	107	667	23	1		1	ACACB	12	109679099	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	109679099	24172796	13618	21769											
ACACB	32	broad.mit.edu	37	chr12	109690858	109690858	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacacatccaacaaccagctGggtggcgttcagatcatgca	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109690858	C	C	109690858	2	2	9	1	0	0	0	0	0	0	0	1	107	1335	47	4		4	ACACB	12	109690858	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11759	109690858	24161037	13619	21770											
ACACB	32	broad.mit.edu	37	chr12	109696760	109696760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagagacatctgatcccCgcagctctgtgttccagata	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109696760	A	A	109696760	1	1	9	0	1	0	0	0	0	0	0	0	107	667	23	1		1	ACACB	12	109696760	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5902	109696760	24155135	13620	21771											
ACACB	32	broad.mit.edu	37	chr12	109697925	109697925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagataagggccatgttgccCatgcacattggggaaggatc	13	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109697925	A	A	109697925	1	1	9	0	1	0	0	0	0	0	0	0	107	609	21	2		2	ACACB	12	109697925	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1165	109697925	24153970	13621	21772											
ACACB	32	broad.mit.edu	37	chr12	109698387	109698387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgccctatgcggagctccGgggaggctcctgggtggtca	16	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109698387	T	T	109698387	3	4	9	1	0	0	0	0	1	0	0	0	107	1116	39	1	6785	1	ACACB	12	109698387	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	462	109698387	24153508	13622	21773											
MYO1H	283446	broad.mit.edu	37	chr12	109826620	109826620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctttgtcgacaacctcCgcaagcgtttcagcgagaac	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109826620	A	A	109826620	3	1	9	1	0	0	0	0	1	0	0	0	10169	652	23	1	99	1	MYO1H	12	109826620	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	128233	109826620	24025275	13623	21774											
MYO1H	283446	broad.mit.edu	37	chr12	109847428	109847428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagtctttgacaagaatGggtatgttttgtcattacct	9	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109847428	T	T	109847428	3	4	9	1	0	0	0	0	1	0	0	0	10169	1362	47	2	1212	2	MYO1H	12	109847428	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20808	109847428	24004467	13624	21775											
MYO1H	283446	broad.mit.edu	37	chr12	109870795	109870795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtacatcggctacaaaccCgaggaatacaagttaggcaa	9	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109870795	A	A	109870795	2	1	9	1	0	0	0	0	0	0	0	1	10169	639	23	1		1	MYO1H	12	109870795	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23367	109870795	23981100	13625	21776											
UBE3B	89910	broad.mit.edu	37	chr12	109921405	109921405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggttcatcgatagagccCgtcaggcacgagaagaaagg	13	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109921405	A	A	109921405	3	1	9	1	0	0	0	0	1	0	0	0	17006	652	23	1	51	1	UBE3B	12	109921405	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50610	109921405	23930490	13626	21777											
UBE3B	89910	broad.mit.edu	37	chr12	109926398	109926398	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaatcctgcaggactccCgactcatcaccctgtacctc	6	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109926398	A	A	109926398	2	1	9	1	0	0	0	0	0	0	0	1	17006	644	23	1		1	UBE3B	12	109926398	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4993	109926398	23925497	13627	21778											
UBE3B	89910	broad.mit.edu	37	chr12	109935585	109935585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgttctggatgcacacGgagacctgtctgaatgagtg	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109935585	T	T	109935585	1	4	9	0	1	0	0	0	0	0	0	0	17006	1131	39	1		1	UBE3B	12	109935585	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9187	109935585	23916310	13628	21779											
UBE3B	89910	broad.mit.edu	37	chr12	109936019	109936019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagtttctgatttaacGgtctgctattctttgcagcg	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109936019	T	T	109936019	1	4	9	0	1	0	0	0	0	0	0	0	17006	1131	39	1		1	UBE3B	12	109936019	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	434	109936019	23915876	13629	21780											
UBE3B	89910	broad.mit.edu	37	chr12	109936168	109936168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctaatgggtaagtatcCgtggctggaacttgattgtg	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109936168	A	A	109936168	1	1	9	0	1	0	0	0	0	0	0	0	17006	667	23	1		1	UBE3B	12	109936168	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	109936168	23915727	13630	21781											
UBE3B	89910	broad.mit.edu	37	chr12	109939183	109939183	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctctctcctagccttaacGagtcaatgcacttgatcacc	6	14	3	1	rs144278603		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109939183	T	T	109939183	4	4	9	1	0	0	0	0	0	1	0	0	17006	1059	37	3	1168	3	UBE3B	12	109939183	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3015	109939183	23912712	13631	21782											
UBE3B	89910	broad.mit.edu	37	chr12	109968371	109968371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcacacagtctactacGgtggtttccatggaagtcac	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109968371	T	T	109968371	3	4	9	1	0	0	0	0	1	0	0	0	17006	1116	39	1	2924	1	UBE3B	12	109968371	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29188	109968371	23883524	13632	21783											
C12orf34	84915	broad.mit.edu	37	chr12	110182007	110182007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaacacctggcctgccCgagcaagagcctggagctgc	14	15	0	1	rs146405681	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110182007	A	A	110182007	3	1	9	1	0	0	0	0	1	0	0	0	1694	652	23	1	58	1	C12orf34	12	110182007	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	213636	110182007	23669888	13633	21784											
TCHP	84260	broad.mit.edu	37	chr12	110342585	110342585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactggaaaaagaacaaccCgaaacttcgagaggtgaaaa	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110342585	A	A	110342585	3	1	9	1	0	0	0	0	1	0	0	0	15824	652	23	1	453	1	TCHP	12	110342585	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160578	110342585	23509310	13634	21785											
TCHP	84260	broad.mit.edu	37	chr12	110352316	110352316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgggcacaagaggaatccCtgaaacacagggagcaactt	12	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110352316	A	A	110352316	3	1	9	1	0	0	0	0	1	0	0	0	15824	680	24	2	1242	2	TCHP	12	110352316	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9731	110352316	23499579	13635	21786											
TCHP	84260	broad.mit.edu	37	chr12	110354402	110354402	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcttttctcagccttacGgacatccaaaaattgcttgg	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110354402	T	T	110354402	4	4	9	1	0	0	0	0	0	1	0	0	15824	1117	39	1	1517	1	TCHP	12	110354402	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2086	110354402	23497493	13636	21787											
TCHP	84260	broad.mit.edu	37	chr12	110354525	110354525	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgttaacagtaagtgccCggggcactgtcagatggctc	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110354525	A	A	110354525	1	1	9	0	1	0	0	0	0	0	0	0	15824	667	23	1		1	TCHP	12	110354525	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	123	110354525	23497370	13637	21788											
GIT2	9815	broad.mit.edu	37	chr12	110376268	110376268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcctgatgacatcttcGgtgctagggagagtggggct	15	8	2	3	rs139771901		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110376268	T	T	110376268	2	4	9	1	0	0	0	0	0	0	0	1	6461	1103	39	1		1	GIT2	12	110376268	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21743	110376268	23475627	13638	21789											
GIT2	9815	broad.mit.edu	37	chr12	110390426	110390426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgactcctccacatgcccCaatcccaagcgtcccttgag	6	18	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110390426	A	A	110390426	1	1	9	0	1	0	0	0	0	0	0	0	6461	609	21	2		2	GIT2	12	110390426	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14158	110390426	23461469	13639	21790											
GIT2	9815	broad.mit.edu	37	chr12	110390969	110390969	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgccacgctgtcatagtcGggctgatcgttgtcttgact	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110390969	T	T	110390969	2	4	9	1	0	0	0	0	0	0	0	1	6461	1103	39	1		1	GIT2	12	110390969	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	543	110390969	23460926	13640	21791											
GIT2	9815	broad.mit.edu	37	chr12	110418736	110418736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaactggagatgtgaaacGgtcattctccatccactcac	7	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110418736	T	T	110418736	1	4	9	0	1	0	0	0	0	0	0	0	6461	1131	39	1		1	GIT2	12	110418736	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27767	110418736	23433159	13641	21792											
GIT2	9815	broad.mit.edu	37	chr12	110421192	110421192	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaccttgcataatcaacGggagttttcccactagaatc	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110421192	T	T	110421192	2	4	9	1	0	0	0	0	0	0	0	1	6461	1103	39	1		1	GIT2	12	110421192	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2456	110421192	23430703	13642	21793											
GIT2	9815	broad.mit.edu	37	chr12	110426765	110426765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattttaaaaggtgtgaccCaccttgctaagatctttggc	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110426765	A	A	110426765	1	1	9	0	1	0	0	0	0	0	0	0	6461	609	21	2		2	GIT2	12	110426765	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5573	110426765	23425130	13643	21794											
GIT2	9815	broad.mit.edu	37	chr12	110426805	110426805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcacactatcgtcatccCggcagggcaagcgatggacg	12	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110426805	A	A	110426805	3	1	9	1	0	0	0	0	1	0	0	0	6461	652	23	1	2017	1	GIT2	12	110426805	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	110426805	23425090	13644	21795											
ANKRD13A	88455	broad.mit.edu	37	chr12	110461868	110461868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaactaaatccggattctGgggctggaggacagataaag	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110461868	T	T	110461868	3	4	9	1	0	0	0	0	1	0	0	0	641	1357	47	2	778	2	ANKRD13A	12	110461868	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35063	110461868	23390027	13645	21796											
ANKRD13A	88455	broad.mit.edu	37	chr12	110467268	110467268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgacctcagtcttttcttGgttgaattctgcaggtttaa	9	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110467268	T	T	110467268	1	4	9	0	1	0	0	0	0	0	0	0	641	1363	47	2		2	ANKRD13A	12	110467268	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5400	110467268	23384627	13646	21797											
C12orf76	400073	broad.mit.edu	37	chr12	110503741	110503741	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttactgttctcttggtccCgtgtatcacgtggctggatt	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110503741	A	A	110503741	1	1	9	0	1	0	0	0	0	0	0	0	1728	667	23	1		1	C12orf76	12	110503741	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	36473	110503741	23348154	13647	21798											
ATP2A2	488	broad.mit.edu	37	chr12	110765312	110765312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgtcggtatttaagttGggatgtggtattcatcttgt	12	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110765312	T	T	110765312	1	4	9	0	1	0	0	0	0	0	0	0	1141	1363	47	2		2	ATP2A2	12	110765312	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	261571	110765312	23086583	13648	21799											
ATP2A2	488	broad.mit.edu	37	chr12	110765572	110765572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgggcacttcaatgaccCggttcatggagggtcctgga	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110765572	A	A	110765572	3	1	9	1	0	0	0	0	1	0	0	0	1141	652	23	1	875	1	ATP2A2	12	110765572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	260	110765572	23086323	13649	21800											
ATP2A2	488	broad.mit.edu	37	chr12	110770441	110770441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaggtgatacttgttccCttaatgagtttaccataact	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110770441	A	A	110770441	3	1	9	1	0	0	0	0	1	0	0	0	1141	681	24	2	1169	2	ATP2A2	12	110770441	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4869	110770441	23081454	13650	21801											
ATP2A2	488	broad.mit.edu	37	chr12	110771822	110771822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaaccaatacaggcaaaGggtgtgtatgaaaaagttgg	11	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110771822	T	T	110771822	3	4	9	1	0	0	0	0	1	0	0	0	1141	991	35	2	1335	2	ATP2A2	12	110771822	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1381	110771822	23080073	13651	21802											
ATP2A2	488	broad.mit.edu	37	chr12	110781206	110781206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggaaccattgatcagcGggtggctctttttccgttac	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110781206	T	T	110781206	3	4	9	1	0	0	0	0	1	0	0	0	1141	1116	39	1	2550	1	ATP2A2	12	110781206	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9384	110781206	23070689	13652	21803											
ATP2A2	488	broad.mit.edu	37	chr12	110783020	110783020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacttgggaaatatactGggctgataggaatttgattg	13	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110783020	T	T	110783020	1	4	9	0	1	0	0	0	0	0	0	0	1141	1363	47	2		2	ATP2A2	12	110783020	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1814	110783020	23068875	13653	21804											
ANAPC7	51434	broad.mit.edu	37	chr12	110820697	110820697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagagatattgaaaaggcGgcatccaaggttctcaacat	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110820697	T	T	110820697	3	4	9	1	0	0	0	0	1	0	0	0	606	1116	39	1	835	1	ANAPC7	12	110820697	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37677	110820697	23031198	13654	21805											
C12orf24	29902	broad.mit.edu	37	chr12	110924439	110924439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactggagagagaggactcGgggtcttctgatatcgcagc	14	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110924439	T	T	110924439	2	4	9	1	0	0	0	0	0	0	0	1	1691	1103	39	1		1	C12orf24	12	110924439	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	103742	110924439	22927456	13655	21806											
C12orf24	29902	broad.mit.edu	37	chr12	110924454	110924454	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactcggggtcttctgatatCgcagctgcatctgcacctga	11	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110924454	A	A	110924454	2	1	9	1	0	0	0	0	0	0	0	1	1691	874	31	3		3	C12orf24	12	110924454	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	110924454	22927441	13656	21807											
TCTN1	79600	broad.mit.edu	37	chr12	111070328	111070328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgagatttccttcgtccCtgacatcatctctgtgcact	6	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111070328	A	A	111070328	3	1	9	1	0	0	0	0	1	0	0	0	15844	680	24	2	794	2	TCTN1	12	111070328	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145874	111070328	22781567	13657	21808											
TCTN1	79600	broad.mit.edu	37	chr12	111072571	111072571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggctttttacagcagccCggaaattctgagggtaagaa	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111072571	A	A	111072571	3	1	9	1	0	0	0	0	1	0	0	0	15844	652	23	1	1003	1	TCTN1	12	111072571	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2243	111072571	22779324	13658	21809											
PPP1CC	5501	broad.mit.edu	37	chr12	111160002	111160002	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgcattgtcaaactctcCgcaataattgggcgcagaaa	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111160002	A	A	111160002	4	1	9	1	0	0	0	0	0	1	0	0	12452	661	23	1	159	1	PPP1CC	12	111160002	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87431	111160002	22691893	13659	21810											
MYL2	4633	broad.mit.edu	37	chr12	111348813	111348813	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggacagaggcggtactcGggggagagagatgagggcag	21	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111348813	T	T	111348813	1	4	9	0	1	0	0	0	0	0	0	0	10141	1131	39	1		1	MYL2	12	111348813	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	188811	111348813	22503082	13660	21811											
CUX2	23316	broad.mit.edu	37	chr12	111701560	111701560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctttctcttgttgtctcCaaaggtggtggcccttagta	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111701560	A	A	111701560	1	1	9	0	1	0	0	0	0	0	0	0	4098	609	21	2		2	CUX2	12	111701560	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	352747	111701560	22150335	13661	21812											
CUX2	23316	broad.mit.edu	37	chr12	111772339	111772339	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgttgagcctgtccctggaGagcagcaaggagaaccagca	13	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111772339	T	T	111772339	3	4	9	1	0	0	0	0	1	0	0	0	4098	933	33	3	3095	3	CUX2	12	111772339	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70779	111772339	22079556	13662	21813											
BRAP	8315	broad.mit.edu	37	chr12	112121109	112121109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcatcagacatttcccCggctaaagaacacatgaatg	6	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112121109	A	A	112121109	3	1	9	1	0	0	0	0	1	0	0	0	1506	652	23	1	1737	1	BRAP	12	112121109	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	348770	112121109	21730786	13663	21814											
ACAD10	80724	broad.mit.edu	37	chr12	112130677	112130677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggcggagttctcattcCttctccagggagagtcgctg	13	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112130677	A	A	112130677	3	1	9	1	0	0	0	0	1	0	0	0	108	681	24	2	166	2	ACAD10	12	112130677	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9568	112130677	21721218	13664	21815											
ACAD10	80724	broad.mit.edu	37	chr12	112150445	112150445	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacctcaaagacttactGggtatccagaccacaggtat	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112150445	T	T	112150445	2	4	9	1	0	0	0	0	0	0	0	1	108	1335	47	2		2	ACAD10	12	112150445	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19768	112150445	21701450	13665	21816											
ACAD10	80724	broad.mit.edu	37	chr12	112150498	112150498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgttttggtagctctctcCaaggcgaaggttttggtctg	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112150498	A	A	112150498	1	1	9	0	1	0	0	0	0	0	0	0	108	609	21	2		2	ACAD10	12	112150498	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	112150498	21701397	13666	21817											
ACAD10	80724	broad.mit.edu	37	chr12	112153732	112153732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcccccagggacactcCttccatctgcccatgccata	7	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112153732	A	A	112153732	3	1	9	1	0	0	0	0	1	0	0	0	108	681	24	2	1077	2	ACAD10	12	112153732	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3234	112153732	21698163	13667	21818											
ACAD10	80724	broad.mit.edu	37	chr12	112187111	112187111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcactgcatgaggctgatcGggttctcagagagggccctg	14	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112187111	T	T	112187111	3	4	9	1	0	0	0	0	1	0	0	0	108	1116	39	1	2942	1	ACAD10	12	112187111	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33379	112187111	21664784	13668	21819											
ACAD10	80724	broad.mit.edu	37	chr12	112193512	112193512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgattaaaatggtcgcccCgtccatggcctcccgagtga	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112193512	A	A	112193512	3	1	9	1	0	0	0	0	1	0	0	0	108	652	23	1	3173	1	ACAD10	12	112193512	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6401	112193512	21658383	13669	21820											
ACAD10	80724	broad.mit.edu	37	chr12	112193526	112193526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccccgtccatggcctccCgagtgattgatcgtgcgatt	11	14	0	2	rs115809570	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112193526	A	A	112193526	2	1	9	1	0	0	0	0	0	0	0	1	108	644	23	1		1	ACAD10	12	112193526	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	112193526	21658369	13670	21821											
ALDH2	217	broad.mit.edu	37	chr12	112220840	112220840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctaggagcattgtttacGgggcaggttttctgtgcagc	16	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112220840	T	T	112220840	1	4	9	0	1	0	0	0	0	0	0	0	496	1131	39	1		1	ALDH2	12	112220840	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27314	112220840	21631055	13671	21822											
MAPKAPK5	8550	broad.mit.edu	37	chr12	112308954	112308954	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtgacttgatgacaccCcagttcaccccttattatgt	7	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112308954	A	A	112308954	2	1	9	1	0	0	0	0	0	0	0	1	9383	610	22	2		2	MAPKAPK5	12	112308954	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88114	112308954	21542941	13672	21823											
MAPKAPK5	8550	broad.mit.edu	37	chr12	112321433	112321433	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatctatgtgatgctgtgcGgataccctcctttttactcc	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112321433	T	T	112321433	4	4	9	1	0	0	0	0	0	1	0	0	9383	1117	39	1	743	1	MAPKAPK5	12	112321433	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12479	112321433	21530462	13673	21824											
TMEM116	89894	broad.mit.edu	37	chr12	112451150	112451150	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctcaccctagacagatGggagcctcctggggtgtcca	11	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112451150	T	T	112451150	1	4	9	0	1	0	0	0	0	0	0	0	16153	1363	47	2		2	TMEM116	12	112451150	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	129717	112451150	21400745	13674	21825											
ERP29	10961	broad.mit.edu	37	chr12	112451307	112451307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgccgcatttctctcccCgctgcttccccttctcctgg	7	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112451307	A	A	112451307	3	1	9	1	0	0	0	0	1	0	0	0	5284	652	23	1	40	1	ERP29	12	112451307	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	157	112451307	21400588	13675	21826											
NAA25	80018	broad.mit.edu	37	chr12	112518901	112518901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagaccaaaagtagtagGgatttttggggacaatctta	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112518901	T	T	112518901	3	4	9	1	0	0	0	0	1	0	0	0	10215	1232	43	2	2558	2	NAA25	12	112518901	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67594	112518901	21332994	13676	21827											
NAA25	80018	broad.mit.edu	37	chr12	112528533	112528533	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaagaaacatacgtcGgtgcatctcccggtaaagga	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112528533	T	T	112528533	2	4	9	1	0	0	0	0	0	0	0	1	10215	1124	39	1		1	NAA25	12	112528533	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9632	112528533	21323362	13677	21828											
TRAFD1	10906	broad.mit.edu	37	chr12	112578719	112578719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagattattgtggtgccCggacggaactatgtggcaac	13	7	0	2	rs141135769		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112578719	A	A	112578719	2	1	9	1	0	0	0	0	0	0	0	1	16571	643	23	1		1	TRAFD1	12	112578719	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50186	112578719	21273176	13678	21829											
C12orf51	283450	broad.mit.edu	37	chr12	112620901	112620901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaataatcttctaaccctGggctcccttgagtatcaaag	7	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112620901	T	T	112620901	3	4	9	1	0	0	0	0	1	0	0	0	1709	1348	47	2	2367	2	C12orf51	12	112620901	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42182	112620901	21230994	13679	21830											
C12orf51	283450	broad.mit.edu	37	chr12	112620945	112620945	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgatttactacagacacGgttagaatctcttctgttga	7	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112620945	T	T	112620945	2	4	9	1	0	0	0	0	0	0	0	1	1709	1103	39	1		1	C12orf51	12	112620945	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	112620945	21230950	13680	21831											
C12orf51	283450	broad.mit.edu	37	chr12	112654665	112654665	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaggaaactatgggtcCggtgtcatcatcggtgtctc	12	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112654665	A	A	112654665	4	1	9	1	0	0	0	0	0	1	0	0	1709	661	23	1	6079	1	C12orf51	12	112654665	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33720	112654665	21197230	13681	21832											
C12orf51	283450	broad.mit.edu	37	chr12	112667465	112667465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggatgcttatatatatgGgggaagcaatgatttgggga	14	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112667465	T	T	112667465	1	4	9	0	1	0	0	0	0	0	0	0	1709	1247	43	2		2	C12orf51	12	112667465	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12800	112667465	21184430	13682	21833											
C12orf51	283450	broad.mit.edu	37	chr12	112667481	112667481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgggggaagcaatgatttGgggaacatggtggttggtac	17	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112667481	T	T	112667481	1	4	9	0	1	0	0	0	0	0	0	0	1709	1363	47	2		2	C12orf51	12	112667481	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16	112667481	21184414	13683	21834											
C12orf51	283450	broad.mit.edu	37	chr12	112691952	112691952	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgtttgtgttaggcccCgcatatatcaccaacttcaa	6	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112691952	A	A	112691952	2	1	9	1	0	0	0	0	0	0	0	1	1709	639	23	1		1	C12orf51	12	112691952	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24471	112691952	21159943	13684	21835											
C12orf51	283450	broad.mit.edu	37	chr12	112694199	112694199	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagctcctgggatatggacCgtttctttaaatttatagtt	9	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112694199	A	A	112694199	2	1	9	1	0	0	0	0	0	0	0	1	1709	639	23	1		1	C12orf51	12	112694199	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2247	112694199	21157696	13685	21836											
C12orf51	283450	broad.mit.edu	37	chr12	112703757	112703757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttggttaggatcacatccCgtagctgggagagtccactg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112703757	A	A	112703757	3	1	9	1	0	0	0	0	1	0	0	0	1709	652	23	1	11111	1	C12orf51	12	112703757	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9558	112703757	21148138	13686	21837											
C12orf51	283450	broad.mit.edu	37	chr12	112708043	112708043	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtatttacctgaaagacaacGagaatgcagcgtataataca	8	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112708043	T	T	112708043	2	4	9	1	0	0	0	0	0	0	0	1	1709	1045	37	3		3	C12orf51	12	112708043	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4286	112708043	21143852	13687	21838											
C12orf51	283450	broad.mit.edu	37	chr12	112708145	112708145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaattggatgctgcttgccCaagacacttgtgattggaag	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112708145	A	A	112708145	3	1	9	1	0	0	0	0	1	0	0	0	1709	593	21	2	11485	2	C12orf51	12	112708145	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	112708145	21143750	13688	21839											
C12orf51	283450	broad.mit.edu	37	chr12	112708169	112708169	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttgtgattggaagattGgggttggtggcaagaagatt	15	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112708169	T	T	112708169	2	4	9	1	0	0	0	0	0	0	0	1	1709	1335	47	2		2	C12orf51	12	112708169	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	112708169	21143726	13689	21840											
C12orf51	283450	broad.mit.edu	37	chr12	112717074	112717074	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttccaccaaaaagagatcGggtggcagagctgcctgatc	12	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112717074	T	T	112717074	2	4	9	1	0	0	0	0	0	0	0	1	1709	1124	39	1		1	C12orf51	12	112717074	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8905	112717074	21134821	13690	21841											
RPH3A	22895	broad.mit.edu	37	chr12	113316876	113316876	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgttcaggaaatgtttgctGagtgactgaatattcgttat	11	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113316876	T	T	113316876	1	4	9	0	1	0	0	0	0	0	0	0	13662	1305	45	3		3	RPH3A	12	113316876	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	599802	113316876	20535019	13691	21842											
RPH3A	22895	broad.mit.edu	37	chr12	113327859	113327859	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaccaccgggtcagccCgaggcatggccctttatgag	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113327859	A	A	113327859	2	1	9	1	0	0	0	0	0	0	0	1	13662	644	23	1		1	RPH3A	12	113327859	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10983	113327859	20524036	13692	21843											
OAS2	4939	broad.mit.edu	37	chr12	113440875	113440875	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttaaagaaaactgcttcCgacaatcaacagccaagatc	5	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113440875	A	A	113440875	2	1	9	1	0	0	0	0	0	0	0	1	10895	644	23	1		1	OAS2	12	113440875	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113016	113440875	20411020	13693	21844											
OAS2	4939	broad.mit.edu	37	chr12	113446984	113446984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaaagaagcaaaggaatGgttatcctctccctgcttca	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113446984	T	T	113446984	3	4	9	1	0	0	0	0	1	0	0	0	10895	1357	47	2	2097	2	OAS2	12	113446984	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6109	113446984	20404911	13694	21845											
DTX1	1840	broad.mit.edu	37	chr12	113532922	113532922	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcagccgcctgggaagatgGagttccacctcatcccccac	10	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113532922	T	T	113532922	4	4	9	1	0	0	0	0	0	1	0	0	4833	1175	41	3	1488	3	DTX1	12	113532922	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85938	113532922	20318973	13695	21846											
RASAL1	8437	broad.mit.edu	37	chr12	113565871	113565871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttccccaaccacaaaccCgacagtgtcctcatccagca	4	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113565871	A	A	113565871	3	1	9	1	0	0	0	0	1	0	0	0	13171	666	23	1	2255	1	RASAL1	12	113565871	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32949	113565871	20286024	13696	21847											
TPCN1	53373	broad.mit.edu	37	chr12	113710497	113710497	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctaacccttcagacccCgtaagtaatcagcacatttg	5	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113710497	A	A	113710497	2	1	9	1	0	0	0	0	0	0	0	1	16519	666	23	1		1	TPCN1	12	113710497	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	144626	113710497	20141398	13697	21848											
TPCN1	53373	broad.mit.edu	37	chr12	113722406	113722406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttggtggtggcagtcaacGgggtctggatcctcgtggag	17	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113722406	T	T	113722406	3	4	9	1	0	0	0	0	1	0	0	0	16519	1116	39	1	1641	1	TPCN1	12	113722406	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11909	113722406	20129489	13698	21849											
SLC24A6	80024	broad.mit.edu	37	chr12	113742146	113742146	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacttctgtgtggcttcGggagatctggagcaggcagc	14	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113742146	T	T	113742146	2	4	9	1	0	0	0	0	0	0	0	1	14584	1124	39	1		1	SLC24A6	12	113742146	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19740	113742146	20109749	13699	21850											
PLBD2	196463	broad.mit.edu	37	chr12	113825467	113825467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggctggcagctgttaacGgggctgcctgtgaggatttt	16	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113825467	T	T	113825467	1	4	9	0	1	0	0	0	0	0	0	0	12121	1131	39	1		1	PLBD2	12	113825467	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	83321	113825467	20026428	13700	21851											
RBM19	9904	broad.mit.edu	37	chr12	114358356	114358356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatttcagagggctgacGggacctcccactacctgcca	9	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114358356	T	T	114358356	1	4	9	0	1	0	0	0	0	0	0	0	13229	1131	39	1		1	RBM19	12	114358356	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	532889	114358356	19493539	13701	21852											
RBM19	9904	broad.mit.edu	37	chr12	114385129	114385129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctggccagcccaggacGgggcctcacctggaatacct	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114385129	T	T	114385129	1	4	9	0	1	0	0	0	0	0	0	0	13229	1131	39	1		1	RBM19	12	114385129	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26773	114385129	19466766	13702	21853											
RBM19	9904	broad.mit.edu	37	chr12	114386746	114386746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcttcgttctcccCgagtatccggccttgccagg	8	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114386746	A	A	114386746	3	1	9	1	0	0	0	0	1	0	0	0	13229	652	23	1	1774	1	RBM19	12	114386746	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1617	114386746	19465149	13703	21854											
RBM19	9904	broad.mit.edu	37	chr12	114386801	114386801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtgcacccttggtggtGgggacgttcttttccctgaa	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114386801	T	T	114386801	2	4	9	1	0	0	0	0	0	0	0	1	13229	1335	47	2		2	RBM19	12	114386801	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55	114386801	19465094	13704	21855											
RBM19	9904	broad.mit.edu	37	chr12	114395815	114395815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaatccatgtccgacagCtccttctgcacagctgcctt	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114395815	A	A	114395815	3	1	9	1	0	0	0	0	1	0	0	0	13229	796	28	3	2346	3	RBM19	12	114395815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9014	114395815	19456080	13705	21856											
RBM19	9904	broad.mit.edu	37	chr12	114395966	114395966	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgaggcaccatgcccacCgtgtccatggcccctgtgcc	11	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114395966	T	T	114395966	1	4	9	0	1	0	0	0	0	0	0	0	13229	667	23	4		4	RBM19	12	114395966	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	151	114395966	19455929	13706	21857											
TBX5	6910	broad.mit.edu	37	chr12	114823326	114823326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccatgtcatcactgcccCgaaatcctttggcaaaggga	9	13	2	0	rs104894378		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114823326	A	A	114823326	3	1	9	1	0	0	0	0	1	0	0	0	15783	652	23	1	925	1	TBX5	12	114823326	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	427360	114823326	19028569	13707	21858											
TBX5	6910	broad.mit.edu	37	chr12	114837264	114837264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaacttttcaactttttgGgagaaggttccacttttctc	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114837264	T	T	114837264	1	4	9	0	1	0	0	0	0	0	0	0	15783	1247	43	2		2	TBX5	12	114837264	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13938	114837264	19014631	13708	21859											
TBX3	6926	broad.mit.edu	37	chr12	115111951	115111951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaaagactggtggaggCaggaagaaggatccatacct	16	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115111951	A	A	115111951	1	1	9	0	1	0	0	0	0	0	0	0	15781	725	25	3		3	TBX3	12	115111951	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	274687	115111951	18739944	13709	21860											
MED13L	23389	broad.mit.edu	37	chr12	116403943	116403943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgatgaccaaaaccactGgggaagattctcagctttgg	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116403943	T	T	116403943	3	4	9	1	0	0	0	0	1	0	0	0	9524	1357	47	2	313	2	MED13L	12	116403943	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1291992	116403943	17447952	13710	21861											
MED13L	23389	broad.mit.edu	37	chr12	116404043	116404043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaaagaagacgctcaccCtggctctgaaaaacaaaaat	7	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116404043	A	A	116404043	3	1	9	1	0	0	0	0	1	0	0	0	9524	680	24	2	413	2	MED13L	12	116404043	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	100	116404043	17447852	13711	21862											
MED13L	23389	broad.mit.edu	37	chr12	116406687	116406687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgatcagatgtccagtGgattatcttcctaaaggcta	9	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116406687	T	T	116406687	1	4	9	0	1	0	0	0	0	0	0	0	9524	1363	47	2		2	MED13L	12	116406687	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2644	116406687	17445208	13712	21863											
MED13L	23389	broad.mit.edu	37	chr12	116424172	116424172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacatcacggtggccccCatatgggtccaacaagagcc	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116424172	A	A	116424172	3	1	9	1	0	0	0	0	1	0	0	0	9524	594	21	2	2447	2	MED13L	12	116424172	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17485	116424172	17427723	13713	21864											
MED13L	23389	broad.mit.edu	37	chr12	116445418	116445418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgccagattttaaacCgtttgttaggttgtgctaag	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116445418	A	A	116445418	3	1	9	1	0	0	0	0	1	0	0	0	9524	652	23	1	4680	1	MED13L	12	116445418	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21246	116445418	17406477	13714	21865											
MED13L	23389	broad.mit.edu	37	chr12	116446462	116446462	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactgctggagttctagtcCatttccataaagggctggat	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116446462	A	A	116446462	4	1	9	1	0	0	0	0	0	1	0	0	9524	603	21	2	4964	2	MED13L	12	116446462	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1044	116446462	17405433	13715	21866											
MAP1LC3B2	643246	broad.mit.edu	37	chr12	117014105	117014105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctcccaggagacgttcGggatgaaattgtcagtgtaa	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117014105	T	T	117014105	3	4	9	1	0	0	0	0	1	0	0	0	9324	1116	39	1	360	1	MAP1LC3B2	12	117014105	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	567643	117014105	16837790	13716	21867											
C12orf49	79794	broad.mit.edu	37	chr12	117158241	117158241	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccagcaaatccttcctctCgcaaacgtagcctgaaagtc	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117158241	A	A	117158241	4	1	9	1	0	0	0	0	0	1	0	0	1706	893	31	3	349	3	C12orf49	12	117158241	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144136	117158241	16693654	13717	21868											
FBXW8	26259	broad.mit.edu	37	chr12	117462004	117462004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccctgtcgctctccgccCatcagctcagggtctctgct	9	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117462004	A	A	117462004	3	1	9	1	0	0	0	0	1	0	0	0	5827	594	21	2	1454	2	FBXW8	12	117462004	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	303763	117462004	16389891	13718	21869											
FBXO21	23014	broad.mit.edu	37	chr12	117595734	117595734	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctctgtgcttctcatcGgagcgcagcttcacctctac	7	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117595734	T	T	117595734	2	4	9	1	0	0	0	0	0	0	0	1	5790	1103	39	1		1	FBXO21	12	117595734	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	133730	117595734	16256161	13719	21870											
NOS1	4842	broad.mit.edu	37	chr12	117655856	117655856	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagccagcttactcatcGgtgtcttttttgctctcttc	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117655856	T	T	117655856	2	4	9	1	0	0	0	0	0	0	0	1	10636	1103	39	1		1	NOS1	12	117655856	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60122	117655856	16196039	13720	21871											
KSR2	283455	broad.mit.edu	37	chr12	117964815	117964815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcatccaaaacgtcagtcGgctttgccaagttctgggca	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117964815	T	T	117964815	1	4	9	0	1	0	0	0	0	0	0	0	8654	1131	39	1		1	KSR2	12	117964815	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	308959	117964815	15887080	13721	21872											
KSR2	283455	broad.mit.edu	37	chr12	117968764	117968764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattggattcgaggtcaccGgatgcaggatgacctggggc	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117968764	T	T	117968764	3	4	9	1	0	0	0	0	1	0	0	0	8654	1116	39	1	1104	1	KSR2	12	117968764	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3949	117968764	15883131	13722	21873											
KSR2	283455	broad.mit.edu	37	chr12	118034800	118034800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagcctcttccatacacCgtttttgggcttagattttt	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118034800	A	A	118034800	1	1	9	0	1	0	0	0	0	0	0	0	8654	667	23	1		1	KSR2	12	118034800	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	66036	118034800	15817095	13723	21874											
KSR2	283455	broad.mit.edu	37	chr12	118034867	118034867	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctttcctacgtatctccCgtgcaagggcatggaaaata	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118034867	G	G	118034867	1	3	9	0	1	0	0	0	0	0	0	0	8654	667	23	4		4	KSR2	12	118034867	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	67	118034867	15817028	13724	21875											
KSR2	283455	broad.mit.edu	37	chr12	118198916	118198916	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaagtgtatcagttttcGggaggagggcggtggggtcc	18	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118198916	T	T	118198916	2	4	9	1	0	0	0	0	0	0	0	1	8654	1124	39	1		1	KSR2	12	118198916	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	164049	118198916	15652979	13725	21876											
KSR2	283455	broad.mit.edu	37	chr12	118198980	118198980	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcatgggcggcgtgccCggcggggtcacggtggtgac	18	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118198980	A	A	118198980	2	1	9	1	0	0	0	0	0	0	0	1	8654	639	23	1		1	KSR2	12	118198980	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	118198980	15652915	13726	21877											
KSR2	283455	broad.mit.edu	37	chr12	118293220	118293220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccacatccccgaccccGgggcctgctcacctgacatg	9	19	2	1	rs12316128	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118293220	T	T	118293220	1	4	9	0	1	0	0	0	0	0	0	0	8654	1131	39	1		1	KSR2	12	118293220	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	94240	118293220	15558675	13727	21878											
WSB2	55884	broad.mit.edu	37	chr12	118474229	118474229	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaagcagggcagagtcGggggagaagtcacaagagac	17	7	1	4	rs147184268	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118474229	T	T	118474229	2	4	9	1	0	0	0	0	0	0	0	1	17532	1103	39	1		1	WSB2	12	118474229	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	181009	118474229	15377666	13728	21879											
WSB2	55884	broad.mit.edu	37	chr12	118480646	118480646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttccttcacttcccatacCgtgtttattcaggtcccaga	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118480646	A	A	118480646	3	1	9	1	0	0	0	0	1	0	0	0	17532	666	23	1	679	1	WSB2	12	118480646	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6417	118480646	15371249	13729	21880											
WSB2	55884	broad.mit.edu	37	chr12	118481225	118481225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaatctgcaattgttacCagtctatcaacttttcatcc	4	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118481225	A	A	118481225	1	1	9	0	1	0	0	0	0	0	0	0	17532	609	21	2		2	WSB2	12	118481225	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	579	118481225	15370670	13730	21881											
VSIG10	54621	broad.mit.edu	37	chr12	118504486	118504486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacaatgtcactttgctcCtcactgctgtcatctgtatg	7	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118504486	A	A	118504486	3	1	9	1	0	0	0	0	1	0	0	0	17350	680	24	2	45	2	VSIG10	12	118504486	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23261	118504486	15347409	13731	21882											
VSIG10	54621	broad.mit.edu	37	chr12	118509260	118509260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggttcccacaatcccccCgatatttaaaggttctgtaa	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118509260	A	A	118509260	3	1	9	1	0	0	0	0	1	0	0	0	17350	652	23	1	404	1	VSIG10	12	118509260	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4774	118509260	15342635	13732	21883											
PEBP1	5037	broad.mit.edu	37	chr12	118577322	118577322	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtggcacagtcctctcCgattatgtgggctcggggcc	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118577322	A	A	118577322	2	1	9	1	0	0	0	0	0	0	0	1	11807	639	23	1		1	PEBP1	12	118577322	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68062	118577322	15274573	13733	21884											
TAOK3	51347	broad.mit.edu	37	chr12	118610366	118610366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgttgagtgagaaggtGggcttcctcttcagcctgtg	13	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118610366	T	T	118610366	3	4	9	1	0	0	0	0	1	0	0	0	15668	1348	47	2	921	2	TAOK3	12	118610366	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33044	118610366	15241529	13734	21885											
TAOK3	51347	broad.mit.edu	37	chr12	118619455	118619455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaggtaaccaggttcatGggagacaagctttcatgcaa	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118619455	T	T	118619455	1	4	9	0	1	0	0	0	0	0	0	0	15668	1363	47	2		2	TAOK3	12	118619455	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9089	118619455	15232440	13735	21886											
TAOK3	51347	broad.mit.edu	37	chr12	118639061	118639061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaactttttcacatagtGggcattctataagtgcctgc	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118639061	T	T	118639061	1	4	9	0	1	0	0	0	0	0	0	0	15668	1363	47	2		2	TAOK3	12	118639061	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19606	118639061	15212834	13736	21887											
SUDS3	64426	broad.mit.edu	37	chr12	118838503	118838503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcatgaccagaaagttgcGgaggcgaccaaatgatcccg	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118838503	T	T	118838503	3	4	9	1	0	0	0	0	1	0	0	0	15485	1116	39	1	583	1	SUDS3	12	118838503	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	199442	118838503	15013392	13737	21888											
SUDS3	64426	broad.mit.edu	37	chr12	118839548	118839548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacttttcacatacagtcCtttaactctcaacaccccag	3	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118839548	A	A	118839548	1	1	9	0	1	0	0	0	0	0	0	0	15485	696	24	2		2	SUDS3	12	118839548	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1045	118839548	15012347	13738	21889											
CCDC60	160777	broad.mit.edu	37	chr12	119773055	119773055	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtccggcccttttatgcctCggagaacctaaggcaggtaa	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119773055	A	A	119773055	4	1	9	1	0	0	0	0	0	1	0	0	2859	893	31	3	76	3	CCDC60	12	119773055	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	933507	119773055	14078840	13739	21890											
CCDC60	160777	broad.mit.edu	37	chr12	119909850	119909850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatattttgctattctgagGgaagagactgcaaagaaaaa	11	4	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119909850	T	T	119909850	3	4	9	1	0	0	0	0	1	0	0	0	2859	1223	43	2	232	2	CCDC60	12	119909850	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	136795	119909850	13942045	13740	21891											
CCDC60	160777	broad.mit.edu	37	chr12	119937853	119937853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaccaagactctggaaacGgaaaactcattaagctgttt	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119937853	T	T	119937853	1	4	9	0	1	0	0	0	0	0	0	0	2859	1131	39	1		1	CCDC60	12	119937853	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28003	119937853	13914042	13741	21892											
CCDC60	160777	broad.mit.edu	37	chr12	119943008	119943008	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctgtgaaccctggctcGgatgagcccccaagtgtgaa	11	12	1	3	rs143754310	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119943008	T	T	119943008	2	4	9	1	0	0	0	0	0	0	0	1	2859	1103	39	1		1	CCDC60	12	119943008	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5155	119943008	13908887	13742	21893											
CCDC60	160777	broad.mit.edu	37	chr12	119943019	119943019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggctcggatgagccccCaagtgtgaacacccaggtga	12	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119943019	A	A	119943019	3	1	9	1	0	0	0	0	1	0	0	0	2859	594	21	2	820	2	CCDC60	12	119943019	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	119943019	13908876	13743	21894											
CCDC60	160777	broad.mit.edu	37	chr12	119960781	119960781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtgcagaaagccacatcCaaccagtccagaagaagtct	8	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119960781	A	A	119960781	3	1	9	1	0	0	0	0	1	0	0	0	2859	595	21	2	1116	2	CCDC60	12	119960781	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17762	119960781	13891114	13744	21895											
CCDC60	160777	broad.mit.edu	37	chr12	119966302	119966302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttaaagattagctgacaGggttaagaaaagcctcatga	10	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119966302	T	T	119966302	1	4	9	0	1	0	0	0	0	0	0	0	2859	1015	35	2		2	CCDC60	12	119966302	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5521	119966302	13885593	13745	21896											
CIT	11113	broad.mit.edu	37	chr12	120142251	120142251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcacagatgcagagccCgttctcaatctgaaaagcaa	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120142251	A	A	120142251	3	1	9	1	0	0	0	0	1	0	0	0	3469	652	23	1	1020	1	CIT	12	120142251	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175949	120142251	13709644	13746	21897											
CIT	11113	broad.mit.edu	37	chr12	120146114	120146114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccacaagacacagtgccCgctcttctcctgaacaggaa	8	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120146114	A	A	120146114	3	1	9	1	0	0	0	0	1	0	0	0	3469	652	23	1	1164	1	CIT	12	120146114	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3863	120146114	13705781	13747	21898											
CIT	11113	broad.mit.edu	37	chr12	120150100	120150100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaagtagagggttctcccGggccagcaggtggtgtgcgg	18	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120150100	T	T	120150100	2	4	9	1	0	0	0	0	0	0	0	1	3469	1103	39	1		1	CIT	12	120150100	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3986	120150100	13701795	13748	21899											
CIT	11113	broad.mit.edu	37	chr12	120150954	120150954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccttcgcgccagcactgGggagacctgggttagccacg	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120150954	T	T	120150954	1	4	9	0	1	0	0	0	0	0	0	0	3469	1247	43	2		2	CIT	12	120150954	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	854	120150954	13700941	13749	21900											
CIT	11113	broad.mit.edu	37	chr12	120198754	120198754	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctacctaccgccttctgttCgctgagaattttgcccttct	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120198754	A	A	120198754	4	1	9	1	0	0	0	0	0	1	0	0	3469	893	31	3	3915	3	CIT	12	120198754	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47800	120198754	13653141	13750	21901											
CIT	11113	broad.mit.edu	37	chr12	120204981	120204981	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctcccgatgtttctcttcGagctcctagacacaaaagaa	7	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120204981	T	T	120204981	2	4	9	1	0	0	0	0	0	0	0	1	3469	1045	37	3		3	CIT	12	120204981	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6227	120204981	13646914	13751	21902											
CIT	11113	broad.mit.edu	37	chr12	120210697	120210697	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcagctcggtggcctcCgtgctggcttttacagccta	12	13	0	0	rs141771302	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120210697	A	A	120210697	2	1	9	1	0	0	0	0	0	0	0	1	3469	639	23	1		1	CIT	12	120210697	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5716	120210697	13641198	13752	21903											
CIT	11113	broad.mit.edu	37	chr12	120221889	120221889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgacaggttaaaaaggccCgtggaggttcattaggagca	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120221889	A	A	120221889	1	1	9	0	1	0	0	0	0	0	0	0	3469	667	23	1		1	CIT	12	120221889	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11192	120221889	13630006	13753	21904											
CIT	11113	broad.mit.edu	37	chr12	120288057	120288057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcgagataatatgttcCgctcttcctcaaaaaatgaa	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120288057	A	A	120288057	3	1	9	1	0	0	0	0	1	0	0	0	3469	652	23	1	5818	1	CIT	12	120288057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66168	120288057	13563838	13754	21905											
CIT	11113	broad.mit.edu	37	chr12	120295383	120295383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatagcatagatgtcccCggttgctttctctcttacca	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120295383	A	A	120295383	3	1	9	1	0	0	0	0	1	0	0	0	3469	652	23	1	5901	1	CIT	12	120295383	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7326	120295383	13556512	13755	21906											
CCDC64	92558	broad.mit.edu	37	chr12	120502562	120502562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgtcagatcggaaacGggagctggagcatcgtctca	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120502562	T	T	120502562	3	4	9	1	0	0	0	0	1	0	0	0	2863	1116	39	1	802	1	CCDC64	12	120502562	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	207179	120502562	13349333	13756	21907											
CCDC64	92558	broad.mit.edu	37	chr12	120510564	120510564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgagatggtccttaccCcacaggagctggctggtggg	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120510564	A	A	120510564	1	1	9	0	1	0	0	0	0	0	0	0	2863	638	22	2		2	CCDC64	12	120510564	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8002	120510564	13341331	13757	21908											
GCN1L1	10985	broad.mit.edu	37	chr12	120575017	120575017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctggcttaccttcttcGggaggcagaatcctggcaca	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120575017	T	T	120575017	3	4	9	1	0	0	0	0	1	0	0	0	6361	1116	39	1	1281	1	GCN1L1	12	120575017	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64453	120575017	13276878	13758	21909											
GCN1L1	10985	broad.mit.edu	37	chr12	120578641	120578641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgcagtgcacagctggcGggatccttggaagatactca	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120578641	T	T	120578641	1	4	9	0	1	0	0	0	0	0	0	0	6361	1131	39	1		1	GCN1L1	12	120578641	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3624	120578641	13273254	13759	21910											
GCN1L1	10985	broad.mit.edu	37	chr12	120578771	120578771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggatggggatgatctcGgggaggattttctcccctaa	13	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120578771	T	T	120578771	2	4	9	1	0	0	0	0	0	0	0	1	6361	1103	39	1		1	GCN1L1	12	120578771	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	130	120578771	13273124	13760	21911											
GCN1L1	10985	broad.mit.edu	37	chr12	120582538	120582538	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcataatgtagccatctcGgacatggggtgcaatgtcca	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120582538	T	T	120582538	2	4	9	1	0	0	0	0	0	0	0	1	6361	1124	39	1		1	GCN1L1	12	120582538	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3767	120582538	13269357	13761	21912											
GCN1L1	10985	broad.mit.edu	37	chr12	120587476	120587476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagcaccagcttcacccCgtgagcactcaagttgctca	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120587476	A	A	120587476	3	1	9	1	0	0	0	0	1	0	0	0	6361	652	23	1	3627	1	GCN1L1	12	120587476	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4938	120587476	13264419	13762	21913											
GCN1L1	10985	broad.mit.edu	37	chr12	120602477	120602477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgccagtgagtctatgcGggtggtcaaggaaaagtctc	14	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120602477	T	T	120602477	3	4	9	1	0	0	0	0	1	0	0	0	6361	1116	39	1	6522	1	GCN1L1	12	120602477	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15001	120602477	13249418	13763	21914											
RPLP0	6175	broad.mit.edu	37	chr12	120634839	120634839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaacaatatcaaagtcCgtgtgaagcctttcctgtca	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120634839	A	A	120634839	1	1	9	0	1	0	0	0	0	0	0	0	13715	667	23	1		1	RPLP0	12	120634839	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32362	120634839	13217056	13764	21915											
RPLP0	6175	broad.mit.edu	37	chr12	120635152	120635152	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtgggaaggtgtaatcCgtctccacagacaaggccag	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120635152	A	A	120635152	2	1	9	1	0	0	0	0	0	0	0	1	13715	639	23	1		1	RPLP0	12	120635152	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	313	120635152	13216743	13765	21916											
SIRT4	23409	broad.mit.edu	37	chr12	120741895	120741895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacggtttgaacgcaaaccCgtgtgttgttttgggagagt	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120741895	A	A	120741895	1	1	9	0	1	0	0	0	0	0	0	0	14453	667	23	1		1	SIRT4	12	120741895	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	106743	120741895	13110000	13766	21917											
PLA2G1B	5319	broad.mit.edu	37	chr12	120763750	120763750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagaaggggtcactcccCgggatcacgcacttgatcat	10	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120763750	A	A	120763750	2	1	9	1	0	0	0	0	0	0	0	1	12089	639	23	1		1	PLA2G1B	12	120763750	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21855	120763750	13088145	13767	21918											
PLA2G1B	5319	broad.mit.edu	37	chr12	120763793	120763793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggaactgccacacggccCgagggctgatgccgctgtcg	15	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120763793	A	A	120763793	3	1	9	1	0	0	0	0	1	0	0	0	12089	652	23	1	393	1	PLA2G1B	12	120763793	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	120763793	13088102	13768	21919											
MSI1	4440	broad.mit.edu	37	chr12	120791146	120791146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgaggcctgtataactcCggctggcgtaggttgtggct	17	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120791146	A	A	120791146	3	1	9	1	0	0	0	0	1	0	0	0	9969	652	23	1	419	1	MSI1	12	120791146	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27353	120791146	13060749	13769	21920											
COQ5	84274	broad.mit.edu	37	chr12	120941780	120941780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagtttcatacctgagacGgaaaccttcggatactctct	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120941780	T	T	120941780	3	4	9	1	0	0	0	0	1	0	0	0	3780	1116	39	1	116	1	COQ5	12	120941780	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150634	120941780	12910115	13770	21921											
COQ5	84274	broad.mit.edu	37	chr12	120941822	120941822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtactgataggacttcCagtctccagcgatgacctct	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120941822	A	A	120941822	3	1	9	1	0	0	0	0	1	0	0	0	3780	595	21	2	158	2	COQ5	12	120941822	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	120941822	12910073	13771	21922											
COQ5	84274	broad.mit.edu	37	chr12	120954392	120954392	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtatccttgagccaaGgctttctgctttccaacctt	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120954392	T	T	120954392	2	4	9	1	0	0	0	0	0	0	0	1	3780	987	35	2		2	COQ5	12	120954392	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12570	120954392	12897503	13772	21923											
COQ5	84274	broad.mit.edu	37	chr12	120954454	120954454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaccacgacacgagaccCgcccaaggaatcttcttcat	6	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120954454	A	A	120954454	3	1	9	1	0	0	0	0	1	0	0	0	3780	652	23	1	513	1	COQ5	12	120954454	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	120954454	12897441	13773	21924											
COQ5	84274	broad.mit.edu	37	chr12	120960672	120960672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacaccctttgggatctcGggcttaacctccttgggctt	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120960672	T	T	120960672	1	4	9	0	1	0	0	0	0	0	0	0	3780	1131	39	1		1	COQ5	12	120960672	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6218	120960672	12891223	13774	21925											
RNF10	9921	broad.mit.edu	37	chr12	121002806	121002806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatatattgttggatatcGgggttaggaccccctgcttt	11	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121002806	T	T	121002806	1	4	9	0	1	0	0	0	0	0	0	0	13533	1131	39	1		1	RNF10	12	121002806	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42134	121002806	12849089	13775	21926											
RNF10	9921	broad.mit.edu	37	chr12	121004710	121004710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcctctgattctgctttGggtcccaccagcaccgaggg	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121004710	T	T	121004710	3	4	9	1	0	0	0	0	1	0	0	0	13533	1339	47	2	2018	2	RNF10	12	121004710	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1904	121004710	12847185	13776	21927											
RNF10	9921	broad.mit.edu	37	chr12	121013671	121013671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaccgtgttcctgtgccCagttttcaaaattccttcag	7	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121013671	A	A	121013671	2	1	9	1	0	0	0	0	0	0	0	1	13533	581	21	2		2	RNF10	12	121013671	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8961	121013671	12838224	13777	21928											
POP5	51367	broad.mit.edu	37	chr12	121017209	121017209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacttctggatagcttccCgctctcctggagaaggcaga	11	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121017209	A	A	121017209	3	1	9	1	0	0	0	0	1	0	0	0	12348	652	23	1	91	1	POP5	12	121017209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3538	121017209	12834686	13778	21929											
CABP1	9478	broad.mit.edu	37	chr12	121098502	121098502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagggaatgggtatgtcGgggatgacctagccctttcc	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121098502	T	T	121098502	1	4	9	0	1	0	0	0	0	0	0	0	2557	1131	39	1		1	CABP1	12	121098502	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	81293	121098502	12753393	13779	21930											
CABP1	9478	broad.mit.edu	37	chr12	121098638	121098638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaactgcgagatgctttcCgagaggtaacggacagaggc	15	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121098638	A	A	121098638	2	1	9	1	0	0	0	0	0	0	0	1	2557	644	23	1		1	CABP1	12	121098638	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	136	121098638	12753257	13780	21931											
MLEC	9761	broad.mit.edu	37	chr12	121134109	121134109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttaacagtgttttcttcCttgtgttagatgtaccaaag	8	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121134109	A	A	121134109	1	1	9	0	1	0	0	0	0	0	0	0	9706	696	24	2		2	MLEC	12	121134109	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35471	121134109	12717786	13781	21932											
MLEC	9761	broad.mit.edu	37	chr12	121134125	121134125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccttgtgttagatgtacCaaagcttcagcctcatccgg	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121134125	A	A	121134125	3	1	9	1	0	0	0	0	1	0	0	0	9706	594	21	2	674	2	MLEC	12	121134125	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	121134125	12717770	13782	21933											
SPPL3	121665	broad.mit.edu	37	chr12	121206177	121206177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgaggaacatcacgccCaacattgggccccaggtgga	13	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121206177	A	A	121206177	3	1	9	1	0	0	0	0	1	0	0	0	15208	594	21	2	446	2	SPPL3	12	121206177	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72052	121206177	12645718	13783	21934											
C12orf43	64897	broad.mit.edu	37	chr12	121441938	121441938	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttggagctggctgagccCtgtgcccatggctgggttca	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121441938	A	A	121441938	1	1	9	0	1	0	0	0	0	0	0	0	1702	696	24	2		2	C12orf43	12	121441938	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	235761	121441938	12409957	13784	21935											
C12orf43	64897	broad.mit.edu	37	chr12	121442869	121442869	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccttctcacggcctccaGggacagatgtgaagaaaagg	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121442869	A	A	121442869	3	1	9	1	0	0	0	0	1	0	0	0	1702	1000	35	4	407	4	C12orf43	12	121442869	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	931	121442869	12409026	13785	21936											
OASL	8638	broad.mit.edu	37	chr12	121471381	121471381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctcaggtcctcgagccCgaggtccagcaggtcctggc	12	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121471381	A	A	121471381	3	1	9	1	0	0	0	0	1	0	0	0	10897	652	23	1	1200	1	OASL	12	121471381	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28512	121471381	12380514	13786	21937											
P2RX7	5027	broad.mit.edu	37	chr12	121593947	121593947	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagcagcggttgtgtccCgaggtaaggaggggacctgg	18	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121593947	A	A	121593947	2	1	9	1	0	0	0	0	0	0	0	1	11439	639	23	1		1	P2RX7	12	121593947	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	122566	121593947	12257948	13787	21938											
P2RX7	5027	broad.mit.edu	37	chr12	121598738	121598738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgctctgttcctctgacCgaggttgtaaaaagggatgg	14	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121598738	A	A	121598738	2	1	9	1	0	0	0	0	0	0	0	1	11439	644	23	1		1	P2RX7	12	121598738	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4791	121598738	12253157	13788	21939											
P2RX7	5027	broad.mit.edu	37	chr12	121598766	121598766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaagggatggatggaccCgcagagcaaaggtaccttct	12	8	1	1	rs143722015	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121598766	A	A	121598766	3	1	9	1	0	0	0	0	1	0	0	0	11439	652	23	1	439	1	P2RX7	12	121598766	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	121598766	12253129	13789	21940											
P2RX7	5027	broad.mit.edu	37	chr12	121604064	121604064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcaaacagccaagaggcCgggccactgggtcttcataa	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121604064	A	A	121604064	1	1	9	0	1	0	0	0	0	0	0	0	11439	667	23	1		1	P2RX7	12	121604064	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5298	121604064	12247831	13790	21941											
P2RX7	5027	broad.mit.edu	37	chr12	121613176	121613176	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcttacaaatacagatcCttttcttcctacagatacgc	5	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121613176	A	A	121613176	1	1	9	0	1	0	0	0	0	0	0	0	11439	696	24	2		2	P2RX7	12	121613176	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9112	121613176	12238719	13791	21942											
P2RX4	5025	broad.mit.edu	37	chr12	121655053	121655053	+	Missense_Mutation	SNP	G	T	T													taaacttggattccggatctGggatgtggcggattatgtga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121655053	T	T	121655053	3	4	9	1	0	0	0	0	1	0	0	0	11436	1357	47	2	257	2	P2RX4	12	121655053	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41877	121655053	12196842	13792	21943	146	2									
P2RX4	5025	broad.mit.edu	37	chr12	121655063	121655063	+	Silent	SNP	G	T	T													ttccggatctgggatgtggcGgattatgtgataccagctca					rs2303998	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121655063	T	T	121655063	2	4	9	1	0	0	0	0	0	0	0	1	11436	1103	39	1		1	P2RX4	12	121655063	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	121655063	12196832	13793	21944	146	2									
P2RX4	5025	broad.mit.edu	37	chr12	121670805	121670805	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgctaaactcaggcgacCgtgctgtgtgacatcatagt	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121670805	A	A	121670805	2	1	9	1	0	0	0	0	0	0	0	1	11436	639	23	1		1	P2RX4	12	121670805	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15742	121670805	12181090	13794	21945											
CAMKK2	10645	broad.mit.edu	37	chr12	121687565	121687565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaaacaattccgagcacGgggcacaggctgagccaagg	13	12	0	1	rs112954516		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121687565	T	T	121687565	1	4	9	0	1	0	0	0	0	0	0	0	2633	1131	39	1		1	CAMKK2	12	121687565	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16760	121687565	12164330	13795	21946											
ANAPC5	51433	broad.mit.edu	37	chr12	121746379	121746379	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctcctgggtcttcccCagggtatggtagagtctggc	12	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121746379	A	A	121746379	2	1	9	1	0	0	0	0	0	0	0	1	605	581	21	2		2	ANAPC5	12	121746379	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58814	121746379	12105516	13796	21947											
ANAPC5	51433	broad.mit.edu	37	chr12	121746477	121746477	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttggcttcattgaggttctCgatggcagcctccagagctg	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121746477	A	A	121746477	4	1	9	1	0	0	0	0	0	1	0	0	605	893	31	3	197	3	ANAPC5	12	121746477	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	121746477	12105418	13797	21948											
ANAPC5	51433	broad.mit.edu	37	chr12	121747597	121747597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctttgtccaggatagcccCgtcagccaagatgggctcga	11	13	1	1	rs138614006		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121747597	A	A	121747597	3	1	9	1	0	0	0	0	1	0	0	0	605	652	23	1	312	1	ANAPC5	12	121747597	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1120	121747597	12104298	13798	21949											
RNF34	80196	broad.mit.edu	37	chr12	121853995	121853995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgtgggcttcgtgctgtGggctgctgaatgaagtcatg	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121853995	T	T	121853995	3	4	9	1	0	0	0	0	1	0	0	0	13600	1348	47	2	59	2	RNF34	12	121853995	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106398	121853995	11997900	13799	21950											
RNF34	80196	broad.mit.edu	37	chr12	121855370	121855370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcttacaagaaaatctcCgtagatgttctacttgtcac	6	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121855370	A	A	121855370	3	1	9	1	0	0	0	0	1	0	0	0	13600	652	23	1	312	1	RNF34	12	121855370	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1375	121855370	11996525	13800	21951											
RNF34	80196	broad.mit.edu	37	chr12	121855747	121855747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaattacacccagggccCggcacgcttattcttggccg	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121855747	A	A	121855747	1	1	9	0	1	0	0	0	0	0	0	0	13600	667	23	1		1	RNF34	12	121855747	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	377	121855747	11996148	13801	21952											
KDM2B	84678	broad.mit.edu	37	chr12	121867936	121867936	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcactcatcccccaaacGggtggttgaacagcttctcc	9	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121867936	T	T	121867936	1	4	9	0	1	0	0	0	0	0	0	0	8195	1116	39	1		1	KDM2B	12	121867936	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	12189	121867936	11983959	13802	21953											
RNF34	80196	broad.mit.edu	37	chr12	121868028	121868028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatggaaaataaaagccCtcatttttgtaaagtctctc	5	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121868028	A	A	121868028	3	1	9	1	0	0	0	0	1	0	0	0	13600	696	24	2		2	RNF34	12	121868028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	121868028	11983867	13803	21954											
RNF34	80196	broad.mit.edu	37	chr12	121868062	121868062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctcccctcccagagccCgccccgtatttacatactta	5	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121868062	A	A	121868062	3	1	9	1	0	0	0	0	1	0	0	0	13600	667	23	1		1	RNF34	12	121868062	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	121868062	11983833	13804	21955											
HPD	3242	broad.mit.edu	37	chr12	122285060	122285060	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcgcagagagctatattcCgtgtgcacctgcgtgtcatc	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122285060	A	A	122285060	2	1	9	1	0	0	0	0	0	0	0	1	7399	639	23	1		1	HPD	12	122285060	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	416998	122285060	11566835	13805	21956											
HPD	3242	broad.mit.edu	37	chr12	122292638	122292638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcaaacttcaccttccCaaacttgtcttgctctaccc	3	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122292638	A	A	122292638	3	1	9	1	0	0	0	0	1	0	0	0	7399	594	21	2	828	2	HPD	12	122292638	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7578	122292638	11559257	13806	21957											
WDR66	144406	broad.mit.edu	37	chr12	122361883	122361883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaaggataaaagcacccCggtgtatcccttggtaagtg	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122361883	A	A	122361883	3	1	9	1	0	0	0	0	1	0	0	0	17444	652	23	1	740	1	WDR66	12	122361883	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69245	122361883	11490012	13807	21958											
WDR66	144406	broad.mit.edu	37	chr12	122405976	122405976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgctattgtttgccaccCgaacggggtggccggcatgg	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122405976	A	A	122405976	3	1	9	1	0	0	0	0	1	0	0	0	17444	652	23	1	2734	1	WDR66	12	122405976	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44093	122405976	11445919	13808	21959											
MLXIP	22877	broad.mit.edu	37	chr12	122614649	122614649	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtggcctggcccaatccCcgggaaataggtaacccaaa	11	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122614649	T	T	122614649	2	4	9	1	0	0	0	0	0	0	0	1	9729	610	22	4		4	MLXIP	12	122614649	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	208673	122614649	11237246	13809	21960											
LRRC43	254050	broad.mit.edu	37	chr12	122674658	122674658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttcttgacccccagacGgtcctgctcaccttccaggc	9	17	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122674658	T	T	122674658	1	4	9	0	1	0	0	0	0	0	0	0	9088	1131	39	1		1	LRRC43	12	122674658	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	60009	122674658	11177237	13810	21961											
LRRC43	254050	broad.mit.edu	37	chr12	122674680	122674680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctcaccttccaggccCaacctcgtctccctggacct	6	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122674680	A	A	122674680	2	1	9	1	0	0	0	0	0	0	0	1	9088	581	21	2		2	LRRC43	12	122674680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	122674680	11177215	13811	21962											
DIABLO	56616	broad.mit.edu	37	chr12	122709023	122709023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagacttcaagaggacacGgtacactagataagaatcac	9	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122709023	T	T	122709023	1	4	9	0	1	0	0	0	0	0	0	0	4557	1131	39	1		1	DIABLO	12	122709023	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34343	122709023	11142872	13812	21963											
VPS33A	65082	broad.mit.edu	37	chr12	122720402	122720402	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaattgtttctgcccccCgtctgcggtttcagcaggcc	12	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122720402	A	A	122720402	2	1	9	1	0	0	0	0	0	0	0	1	17328	639	23	1		1	VPS33A	12	122720402	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11379	122720402	11131493	13813	21964											
VPS33A	65082	broad.mit.edu	37	chr12	122723181	122723181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaactttttgtttgagccCactattacacacggattgga	7	9	0	1	rs149119632		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122723181	A	A	122723181	3	1	9	1	0	0	0	0	1	0	0	0	17328	594	21	2	551	2	VPS33A	12	122723181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2779	122723181	11128714	13814	21965											
VPS33A	65082	broad.mit.edu	37	chr12	122723231	122723231	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcttaacaccttgatcaacGagtgcttttgggcgatacaa	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122723231	T	T	122723231	4	4	9	1	0	0	0	0	0	1	0	0	17328	1059	37	3	601	3	VPS33A	12	122723231	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50	122723231	11128664	13815	21966											
CLIP1	6249	broad.mit.edu	37	chr12	122757526	122757526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccatggtgtgtggaatGgggagggtcctctgacatct	15	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122757526	T	T	122757526	3	4	9	1	0	0	0	0	1	0	0	0	3564	1348	47	2	107	2	CLIP1	12	122757526	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34295	122757526	11094369	13816	21967											
CLIP1	6249	broad.mit.edu	37	chr12	122758610	122758610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattgtttaggtcatcccCgttcccattcagggctgctt	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122758610	A	A	122758610	3	1	9	1	0	0	0	0	1	0	0	0	3564	652	23	1	258	1	CLIP1	12	122758610	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1084	122758610	11093285	13817	21968											
CLIP1	6249	broad.mit.edu	37	chr12	122763598	122763598	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttctcagtttctccagctCggcatccttttctgtgagta	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122763598	A	A	122763598	4	1	9	1	0	0	0	0	0	1	0	0	3564	893	31	3	594	3	CLIP1	12	122763598	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4988	122763598	11088297	13818	21969											
CLIP1	6249	broad.mit.edu	37	chr12	122812814	122812814	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtatctccttaccaggtcCgacaatttcctctccaattc	5	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122812814	A	A	122812814	2	1	9	1	0	0	0	0	0	0	0	1	3564	639	23	1		1	CLIP1	12	122812814	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49216	122812814	11039081	13819	21970											
CLIP1	6249	broad.mit.edu	37	chr12	122825412	122825412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttcggaactggctttcCgaagtgcatcaagatccaag	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122825412	A	A	122825412	3	1	9	1	0	0	0	0	1	0	0	0	3564	652	23	1	2041	1	CLIP1	12	122825412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12598	122825412	11026483	13820	21971											
CLIP1	6249	broad.mit.edu	37	chr12	122825697	122825697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctttagcatgggcagccCgttcagagtcttgttgattc	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122825697	A	A	122825697	3	1	9	1	0	0	0	0	1	0	0	0	3564	652	23	1	2326	1	CLIP1	12	122825697	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	285	122825697	11026198	13821	21972											
CLIP1	6249	broad.mit.edu	37	chr12	122825792	122825792	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagttcagcaaattctgcCgtctctgttccaagcccttt	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122825792	A	A	122825792	2	1	9	1	0	0	0	0	0	0	0	1	3564	639	23	1		1	CLIP1	12	122825792	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	122825792	11026103	13822	21973											
CLIP1	6249	broad.mit.edu	37	chr12	122826013	122826013	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgatgagtttcttcccGggctccaaaatgctccttca	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122826013	T	T	122826013	2	4	9	1	0	0	0	0	0	0	0	1	3564	1115	39	1		1	CLIP1	12	122826013	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	221	122826013	11025882	13823	21974											
CLIP1	6249	broad.mit.edu	37	chr12	122862333	122862333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctaaaacaattccagccCactggcctggtgcaaactgg	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122862333	A	A	122862333	3	1	9	1	0	0	0	0	1	0	0	0	3564	595	21	2	4115	2	CLIP1	12	122862333	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36320	122862333	10989562	13824	21975											
CLIP1	6249	broad.mit.edu	37	chr12	122862417	122862417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaaactcgctccccaactCgaaagtcatccacaaattcc	3	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122862417	A	A	122862417	3	1	9	1	0	0	0	0	1	0	0	0	3564	884	31	3	4199	3	CLIP1	12	122862417	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	122862417	10989478	13825	21976											
ZCCHC8	55596	broad.mit.edu	37	chr12	122958545	122958545	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtccacaggaacgtcGgagtcgctgtttacgctctc	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122958545	T	T	122958545	2	4	9	1	0	0	0	0	0	0	0	1	17720	1103	39	1		1	ZCCHC8	12	122958545	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96128	122958545	10893350	13826	21977											
KNTC1	9735	broad.mit.edu	37	chr12	123046597	123046597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccattcaaaatagaccCgtattttatcaagagcaagt	5	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123046597	A	A	123046597	1	1	9	0	1	0	0	0	0	0	0	0	8499	667	23	1		1	KNTC1	12	123046597	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	88052	123046597	10805298	13827	21978											
KNTC1	9735	broad.mit.edu	37	chr12	123061476	123061476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctcaaacaagatgtccCatcttctttagaagatgctt	5	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123061476	A	A	123061476	3	1	9	1	0	0	0	0	1	0	0	0	8499	594	21	2	2735	2	KNTC1	12	123061476	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14879	123061476	10790419	13828	21979											
KNTC1	9735	broad.mit.edu	37	chr12	123087490	123087490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaattaattctgacccCgtatagaagatttttctgct	6	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123087490	A	A	123087490	1	1	9	0	1	0	0	0	0	0	0	0	8499	667	23	1		1	KNTC1	12	123087490	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26014	123087490	10764405	13829	21980											
GPR109A	338442	broad.mit.edu	37	chr12	123187767	123187767	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacaatgaagtcatctcGgaacacacagcagttcttct	7	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123187767	T	T	123187767	2	4	9	1	0	0	0	0	0	0	0	1	6690	1124	39	1		1	GPR109A	12	123187767	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	100277	123187767	10664128	13830	21981											
GPR109B	8843	broad.mit.edu	37	chr12	123201221	123201221	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcaatgaagtcatctcGgaacacacagcagttcttct	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123201221	T	T	123201221	2	4	9	1	0	0	0	0	0	0	0	1	6691	1124	39	1		1	GPR109B	12	123201221	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13454	123201221	10650674	13831	21982											
CCDC62	84660	broad.mit.edu	37	chr12	123270332	123270332	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtaggacagctacaagctCgagaacaagctcttacgaca	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123270332	A	A	123270332	2	1	9	1	0	0	0	0	0	0	0	1	2861	876	31	3		3	CCDC62	12	123270332	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	69111	123270332	10581563	13832	21983											
CCDC62	84660	broad.mit.edu	37	chr12	123286246	123286246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactccaagtgctgccaccCgagtaacttcataattgaag	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123286246	A	A	123286246	3	1	9	1	0	0	0	0	1	0	0	0	2861	652	23	1	1587	1	CCDC62	12	123286246	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15914	123286246	10565649	13833	21984											
CCDC62	84660	broad.mit.edu	37	chr12	123286393	123286393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacacaacatgactcccCggcaaggtgagtaacgttca	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123286393	A	A	123286393	3	1	9	1	0	0	0	0	1	0	0	0	2861	652	23	1	1734	1	CCDC62	12	123286393	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147	123286393	10565502	13834	21985											
HIP1R	9026	broad.mit.edu	37	chr12	123332619	123332619	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaacacccaggaggccccCgtgaaggagaagcacgcccg	12	15	1	2	rs112655537		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123332619	A	A	123332619	2	1	9	1	0	0	0	0	0	0	0	1	7182	639	23	1		1	HIP1R	12	123332619	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	46226	123332619	10519276	13835	21986											
HIP1R	9026	broad.mit.edu	37	chr12	123335399	123335399	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatccccagtttcccgcGggcctggaggtgacagatga	13	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123335399	T	T	123335399	2	4	9	1	0	0	0	0	0	0	0	1	7182	1103	39	1		1	HIP1R	12	123335399	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2780	123335399	10516496	13836	21987											
OGFOD2	79676	broad.mit.edu	37	chr12	123461283	123461283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgcgagttcctaccaccCggcacggcctgaggtctacg	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123461283	A	A	123461283	3	1	9	1	0	0	0	0	1	0	0	0	10937	652	23	1	98	1	OGFOD2	12	123461283	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125884	123461283	10390612	13837	21988											
PITPNM2	57605	broad.mit.edu	37	chr12	123481914	123481914	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagcagacgggcgggcagGgcaccaggcggatggcaagg	20	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123481914	C	C	123481914	3	2	9	1	0	0	0	0	1	0	0	0	12046	1232	43	4	2683	4	PITPNM2	12	123481914	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20631	123481914	10369981	13838	21989											
PITPNM2	57605	broad.mit.edu	37	chr12	123489908	123489908	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccccagaggtctggtcCgagacggcttcgtgcttgac	14	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123489908	A	A	123489908	2	1	9	1	0	0	0	0	0	0	0	1	12046	639	23	1		1	PITPNM2	12	123489908	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7994	123489908	10361987	13839	21990											
PITPNM2	57605	broad.mit.edu	37	chr12	123489976	123489976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaactgggccatcttacGggaaagcatgagctgtgcct	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123489976	T	T	123489976	3	4	9	1	0	0	0	0	1	0	0	0	12046	1116	39	1	3366	1	PITPNM2	12	123489976	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68	123489976	10361919	13840	21991											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123646666	123646666	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaggaaaagataccttcCgagtcatctagaggaagaaa	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123646666	A	A	123646666	2	1	9	1	0	0	0	0	0	0	0	1	9822	639	23	1		1	MPHOSPH9	12	123646666	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	156690	123646666	10205229	13841	21992											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123651307	123651307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctggaatcagccatttcCgcctgctgacgtctgaagtt	9	13	2	2	rs114386666		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123651307	A	A	123651307	3	1	9	1	0	0	0	0	1	0	0	0	9822	652	23	1	1097	1	MPHOSPH9	12	123651307	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4641	123651307	10200588	13842	21993											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123665736	123665736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgtgttcttttccaaGggactcatactctcctaaaa	5	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123665736	T	T	123665736	3	4	9	1	0	0	0	0	1	0	0	0	9822	1000	35	2	1332	2	MPHOSPH9	12	123665736	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14429	123665736	10186159	13843	21994											
CDK2AP1	8099	broad.mit.edu	37	chr12	123746299	123746299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctaggatctggcattcCgttccgtttctgccaagcac	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123746299	A	A	123746299	3	1	9	1	0	0	0	0	1	0	0	0	3168	652	23	1	19	1	CDK2AP1	12	123746299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80563	123746299	10105596	13844	21995											
SBNO1	55206	broad.mit.edu	37	chr12	123780521	123780521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagctgtttctgttggacCgcaagctgttgagactggtc	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123780521	A	A	123780521	2	1	9	1	0	0	0	0	0	0	0	1	13974	639	23	1		1	SBNO1	12	123780521	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34222	123780521	10071374	13845	21996											
SBNO1	55206	broad.mit.edu	37	chr12	123782476	123782476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcaatgagaaaaaagtcGgatccgattttttcctgcaa	8	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123782476	T	T	123782476	1	4	9	0	1	0	0	0	0	0	0	0	13974	1131	39	1		1	SBNO1	12	123782476	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1955	123782476	10069419	13846	21997											
SBNO1	55206	broad.mit.edu	37	chr12	123834870	123834870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttacctgctgaactgacGgggtaggcattggagttgca	13	9	1	2	rs114977121	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123834870	T	T	123834870	3	4	9	1	0	0	0	0	1	0	0	0	13974	1116	39	1	4186	1	SBNO1	12	123834870	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52394	123834870	10017025	13847	21998											
SBNO1	55206	broad.mit.edu	37	chr12	123834882	123834882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgacggggtaggcattGgagttgcaagccctgcatct	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123834882	T	T	123834882	3	4	9	1	0	0	0	0	1	0	0	0	13974	1348	47	2	4198	2	SBNO1	12	123834882	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	123834882	10017013	13848	21999											
SETD8	387893	broad.mit.edu	37	chr12	123875078	123875078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcccagtttttgaaaaacGgtgttgtctgattttcatct	8	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123875078	T	T	123875078	1	4	9	0	1	0	0	0	0	0	0	0	14250	1131	39	1		1	SETD8	12	123875078	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	40196	123875078	9976817	13849	22000											
SETD8	387893	broad.mit.edu	37	chr12	123875223	123875223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctattcctacatgagccCgaacaaatgctctggaatgc	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123875223	A	A	123875223	3	1	9	1	0	0	0	0	1	0	0	0	14250	652	23	1	189	1	SETD8	12	123875223	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145	123875223	9976672	13850	22001											
SETD8	387893	broad.mit.edu	37	chr12	123880970	123880970	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccaggaagagcaaagcCgagctgcaggtagtcacgtg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123880970	A	A	123880970	2	1	9	1	0	0	0	0	0	0	0	1	14250	639	23	1		1	SETD8	12	123880970	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5747	123880970	9970925	13851	22002											
SETD8	387893	broad.mit.edu	37	chr12	123888243	123888243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcaccttccctggtccCgtggctgagagtggccacca	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123888243	A	A	123888243	1	1	9	0	1	0	0	0	0	0	0	0	14250	667	23	1		1	SETD8	12	123888243	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7273	123888243	9963652	13852	22003											
RILPL2	196383	broad.mit.edu	37	chr12	123915052	123915052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctccaggcagtggagccCacctcttgtagcactgcagc	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123915052	A	A	123915052	1	1	9	0	1	0	0	0	0	0	0	0	13471	609	21	2		2	RILPL2	12	123915052	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26809	123915052	9936843	13853	22004											
RILPL2	196383	broad.mit.edu	37	chr12	123915130	123915130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgttcctgcagcacatccCttagctcctgcagagtgaag	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123915130	A	A	123915130	3	1	9	1	0	0	0	0	1	0	0	0	13471	681	24	2	231	2	RILPL2	12	123915130	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	123915130	9936765	13854	22005											
SNRNP35	11066	broad.mit.edu	37	chr12	123950655	123950655	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggagcgatctcgatccCgagaaagacactgggactcg	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123950655	A	A	123950655	2	1	9	1	0	0	0	0	0	0	0	1	14969	644	23	1		1	SNRNP35	12	123950655	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35525	123950655	9901240	13855	22006											
DDX55	57696	broad.mit.edu	37	chr12	124102274	124102274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcagctgtcatcacctGggtacccatttccaccctgt	7	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124102274	T	T	124102274	1	4	9	0	1	0	0	0	0	0	0	0	4406	1363	47	2		2	DDX55	12	124102274	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	151619	124102274	9749621	13856	22007											
DDX55	57696	broad.mit.edu	37	chr12	124104073	124104073	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtttccagattttgtgccCgtggacgttaataccgacac	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124104073	G	G	124104073	2	3	9	1	0	0	0	0	0	0	0	1	4406	639	23	4		4	DDX55	12	124104073	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1799	124104073	9747822	13857	22008											
TCTN2	79867	broad.mit.edu	37	chr12	124184370	124184370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataatacgtaagtcaaaccCgggtacaataaagcctgtaa	7	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124184370	A	A	124184370	1	1	9	0	1	0	0	0	0	0	0	0	15845	667	23	1		1	TCTN2	12	124184370	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80297	124184370	9667525	13858	22009											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124209157	124209157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattattggaattacacttGgaactaattactaccctctt	5	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124209157	T	T	124209157	1	4	9	0	1	0	0	0	0	0	0	0	1173	1363	47	2		2	ATP6V0A2	12	124209157	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24787	124209157	9642738	13859	22010											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124209218	124209218	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggagcagttgcagaagctCgaggttgaactgagagaagt	15	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124209218	A	A	124209218	2	1	9	1	0	0	0	0	0	0	0	1	1173	871	31	3		3	ATP6V0A2	12	124209218	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	124209218	9642677	13860	22011											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124232213	124232213	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcaaaatgaaaatgtcCgtgattttaggaatcattca	6	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124232213	A	A	124232213	2	1	9	1	0	0	0	0	0	0	0	1	1173	639	23	1		1	ATP6V0A2	12	124232213	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22995	124232213	9619682	13861	22012											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124235631	124235631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccttcacgttttaatcGggtttctcaccttctgcact	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124235631	T	T	124235631	1	4	9	0	1	0	0	0	0	0	0	0	1173	1131	39	1		1	ATP6V0A2	12	124235631	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3418	124235631	9616264	13862	22013											
DNAH10	196385	broad.mit.edu	37	chr12	124265734	124265734	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaatcagacctgccgccCatgcctggggaggcagtaga	13	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124265734	A	A	124265734	2	1	9	1	0	0	0	0	0	0	0	1	4638	581	21	2		2	DNAH10	12	124265734	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30103	124265734	9586161	13863	22014											
DNAH10	196385	broad.mit.edu	37	chr12	124285742	124285742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcttgattgagaccacGgtcttttgtaatctcttgac	9	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124285742	T	T	124285742	1	4	9	0	1	0	0	0	0	0	0	0	4638	1131	39	1		1	DNAH10	12	124285742	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20008	124285742	9566153	13864	22015											
DNAH10	196385	broad.mit.edu	37	chr12	124293477	124293477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgtgcttccattgtgtcCggaattgcgtggagatcacc	12	9	1	2	rs138047908		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124293477	A	A	124293477	2	1	9	1	0	0	0	0	0	0	0	1	4638	643	23	1		1	DNAH10	12	124293477	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7735	124293477	9558418	13865	22016											
DNAH10	196385	broad.mit.edu	37	chr12	124293509	124293509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatcaccaaggtgagagcGgaggtgcttgtgtccttgct	15	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124293509	T	T	124293509	1	4	9	0	1	0	0	0	0	0	0	0	4638	1131	39	1		1	DNAH10	12	124293509	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	124293509	9558386	13866	22017											
DNAH10	196385	broad.mit.edu	37	chr12	124325931	124325931	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggagaaaaactggtgtcCgcgatgatttcagcagaagg	14	6	1	3	rs112230512		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124325931	A	A	124325931	2	1	9	1	0	0	0	0	0	0	0	1	4638	639	23	1		1	DNAH10	12	124325931	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32422	124325931	9525964	13867	22018											
DNAH10	196385	broad.mit.edu	37	chr12	124362449	124362449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcttgtcctcactaaccCggagcggtgagtttgattta	11	9	2	2	rs116330875	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124362449	A	A	124362449	3	1	9	1	0	0	0	0	1	0	0	0	4638	652	23	1	8198	1	DNAH10	12	124362449	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36518	124362449	9489446	13868	22019											
DNAH10	196385	broad.mit.edu	37	chr12	124364431	124364431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcatcgcgcgggtgccCgggagcctatcacctggggc	16	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124364431	A	A	124364431	1	1	9	0	1	0	0	0	0	0	0	0	4638	667	23	1		1	DNAH10	12	124364431	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1982	124364431	9487464	13869	22020											
DNAH10	196385	broad.mit.edu	37	chr12	124409703	124409703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgtttccgtgtggatcGggtctatcgggccgtgactg	16	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124409703	T	T	124409703	3	4	9	1	0	0	0	0	1	0	0	0	4638	1116	39	1	11785	1	DNAH10	12	124409703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45272	124409703	9442192	13870	22021											
DNAH10	196385	broad.mit.edu	37	chr12	124416465	124416465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctgatagagtcctgccCgattgctcttgattctaaat	9	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124416465	A	A	124416465	1	1	9	0	1	0	0	0	0	0	0	0	4638	667	23	1		1	DNAH10	12	124416465	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6762	124416465	9435430	13871	22022											
DNAH10	196385	broad.mit.edu	37	chr12	124419988	124419988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgaggcacatttctcactGggtgctgcaaggagtatgcc	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124419988	T	T	124419988	3	4	9	1	0	0	0	0	1	0	0	0	4638	1357	47	2	13686	2	DNAH10	12	124419988	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3523	124419988	9431907	13872	22023											
NCOR2	9612	broad.mit.edu	37	chr12	124957547	124957547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctctaccatggtgatctctCggtccacgcggtccatgttc	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124957547	A	A	124957547	3	1	9	1	0	0	0	0	1	0	0	0	10331	884	31	3	7202	3	NCOR2	12	124957547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	537559	124957547	8894348	13873	22024											
UBC	7316	broad.mit.edu	37	chr12	125396428	125396428	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgccttgacattctcgatGgtgtcactgggctccacctc	9	13	2	1	rs1071744		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125396428	T	T	125396428	2	4	9	1	0	0	0	0	0	0	0	1	16968	1335	47	2		2	UBC	12	125396428	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	438881	125396428	8455467	13874	22025											
UBC	7316	broad.mit.edu	37	chr12	125397087	125397087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatgccttccttgtcttGgatctttgccttgacattct	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125397087	T	T	125397087	3	4	9	1	0	0	0	0	1	0	0	0	16968	1357	47	2	830	2	UBC	12	125397087	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	659	125397087	8454808	13875	22026											
UBC	7316	broad.mit.edu	37	chr12	125397876	125397876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatcccacctctgagacGgagcaccaggtgcagggtag	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125397876	T	T	125397876	3	4	9	1	0	0	0	0	1	0	0	0	16968	1116	39	1	1619	1	UBC	12	125397876	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	789	125397876	8454019	13876	22027											
UBC	7316	broad.mit.edu	37	chr12	125398161	125398161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtcagacagggtgcgccCatcttccagctgttttccag	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125398161	A	A	125398161	3	1	9	1	0	0	0	0	1	0	0	0	16968	594	21	2	1904	2	UBC	12	125398161	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	285	125398161	8453734	13877	22028											
DHX37	57647	broad.mit.edu	37	chr12	125432387	125432387	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggctttctcgatatcGgggtgcatggcctgtggaag	16	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125432387	T	T	125432387	2	4	9	1	0	0	0	0	0	0	0	1	4550	1103	39	1		1	DHX37	12	125432387	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34226	125432387	8419508	13878	22029											
DHX37	57647	broad.mit.edu	37	chr12	125453151	125453151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtcttccagcggtgtcCgcttgttgaaatgcacagtc	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125453151	A	A	125453151	3	1	9	1	0	0	0	0	1	0	0	0	4550	652	23	1	2208	1	DHX37	12	125453151	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20764	125453151	8398744	13879	22030											
DHX37	57647	broad.mit.edu	37	chr12	125457125	125457125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcacgtttccttcatacCggatctggtaggagacgacc	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125457125	A	A	125457125	3	1	9	1	0	0	0	0	1	0	0	0	4550	652	23	1	2556	1	DHX37	12	125457125	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3974	125457125	8394770	13880	22031											
DHX37	57647	broad.mit.edu	37	chr12	125467128	125467128	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagtctcatctcagcttcGgaagcctggacttcactcag	9	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125467128	T	T	125467128	2	4	9	1	0	0	0	0	0	0	0	1	4550	1103	39	1		1	DHX37	12	125467128	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10003	125467128	8384767	13881	22032											
DHX37	57647	broad.mit.edu	37	chr12	125470864	125470864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaggtagctctggtccCgcctcccacaagccccctga	9	18	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125470864	A	A	125470864	1	1	9	0	1	0	0	0	0	0	0	0	4550	667	23	1		1	DHX37	12	125470864	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3736	125470864	8381031	13882	22033											
BRI3BP	140707	broad.mit.edu	37	chr12	125497061	125497061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtgattgggtgatgacCgttttcttgtttctgcagtt	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125497061	A	A	125497061	1	1	9	0	1	0	0	0	0	0	0	0	1522	667	23	1		1	BRI3BP	12	125497061	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26197	125497061	8354834	13883	22034											
AACS	65985	broad.mit.edu	37	chr12	125561191	125561191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagacctgggatttcctcCgtggaagttctagatggtgc	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125561191	A	A	125561191	1	1	9	0	1	0	0	0	0	0	0	0	9	667	23	1		1	AACS	12	125561191	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	64130	125561191	8290704	13884	22035											
AACS	65985	broad.mit.edu	37	chr12	125570873	125570873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaccctttttctcttccCaggggaaggcaaagaggaaa	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125570873	A	A	125570873	1	1	9	0	1	0	0	0	0	0	0	0	9	609	21	2		2	AACS	12	125570873	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9682	125570873	8281022	13885	22036											
AACS	65985	broad.mit.edu	37	chr12	125587224	125587224	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttttcctcctgctttcaGggtgtgctggaccggttttc	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125587224	T	T	125587224	5	4	9	1	0	0	0	0	0	0	1	0	9	1014	35	2	592	2	AACS	12	125587224	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	16351	125587224	8264671	13886	22037											
AACS	65985	broad.mit.edu	37	chr12	125612781	125612781	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaggggagattcaggccCggaacctgggcatggccgtg	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125612781	A	A	125612781	2	1	9	1	0	0	0	0	0	0	0	1	9	643	23	1		1	AACS	12	125612781	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25557	125612781	8239114	13887	22038											
AACS	65985	broad.mit.edu	37	chr12	125613894	125613894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccaggaaaggcggtctgGggagagagcggcgagctggt	19	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125613894	T	T	125613894	3	4	9	1	0	0	0	0	1	0	0	0	9	1241	43	2	1491	2	AACS	12	125613894	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1113	125613894	8238001	13888	22039											
AACS	65985	broad.mit.edu	37	chr12	125613942	125613942	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccgatcccttgccagccCacacacttctggaacgatga	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125613942	A	A	125613942	2	1	9	1	0	0	0	0	0	0	0	1	9	581	21	2		2	AACS	12	125613942	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	125613942	8237953	13889	22040											
TMEM132B	114795	broad.mit.edu	37	chr12	125834820	125834820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacctctgaatctagtccGggaaggggacacggccacct	13	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125834820	T	T	125834820	3	4	9	1	0	0	0	0	1	0	0	0	16169	1116	39	1	881	1	TMEM132B	12	125834820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	220878	125834820	8017075	13890	22041											
SLC15A4	121260	broad.mit.edu	37	chr12	129299563	129299563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctcccaggttaatgctcCaataaaaccaattaaaaaat	4	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129299563	A	A	129299563	3	1	9	1	0	0	0	0	1	0	0	0	14514	595	21	2	1162	2	SLC15A4	12	129299563	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3464743	129299563	4552332	13891	22042											
FZD10	11211	broad.mit.edu	37	chr12	130647907	130647907	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccggaaactccccaacaaGaacgaccccaactacctgtg	7	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130647907	T	T	130647907	3	4	9	1	0	0	0	0	1	0	0	0	6189	933	33	3	422	3	FZD10	12	130647907	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1348344	130647907	3203988	13892	22043											
PIWIL1	9271	broad.mit.edu	37	chr12	130839038	130839038	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgcccactgagatgctactCgaggcatttgccgtgaacag	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130839038	A	A	130839038	1	1	9	0	1	0	0	0	0	0	0	0	12052	899	31	3		3	PIWIL1	12	130839038	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	191131	130839038	3012857	13893	22044											
PIWIL1	9271	broad.mit.edu	37	chr12	130839524	130839524	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaaggcagcgtgaagtGggacgactcattgattacat	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130839524	T	T	130839524	2	4	9	1	0	0	0	0	0	0	0	1	12052	1335	47	2		2	PIWIL1	12	130839524	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	486	130839524	3012371	13894	22045											
PIWIL1	9271	broad.mit.edu	37	chr12	130846145	130846145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcaatgaagggatgaccCggtgagtgagactgggctac	15	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130846145	A	A	130846145	3	1	9	1	0	0	0	0	1	0	0	0	12052	666	23	1	2027	1	PIWIL1	12	130846145	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6621	130846145	3005750	13895	22046											
RIMBP2	23504	broad.mit.edu	37	chr12	130884346	130884346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcacaaggcctttctgccCattcagctccccctaaaaca	7	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130884346	A	A	130884346	3	1	9	1	0	0	0	0	1	0	0	0	13472	594	21	2	156	2	RIMBP2	12	130884346	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38201	130884346	2967549	13896	22047											
RIMBP2	23504	broad.mit.edu	37	chr12	130929781	130929781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggggcagctcagcttcGgggttctcgttcggtccatc	15	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130929781	T	T	130929781	2	4	9	1	0	0	0	0	0	0	0	1	13472	1103	39	1		1	RIMBP2	12	130929781	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45435	130929781	2922114	13897	22048											
STX2	2054	broad.mit.edu	37	chr12	131285986	131285986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaagatggatggcttccCgctctccagcatctcttcta	9	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131285986	A	A	131285986	3	1	9	1	0	0	0	0	1	0	0	0	15463	652	23	1	453	1	STX2	12	131285986	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	356205	131285986	2565909	13898	22049											
STX2	2054	broad.mit.edu	37	chr12	131293210	131293210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgaagatccactgaagtcCggttcccactctcatcctga	7	15	1	3	rs149127129	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131293210	A	A	131293210	3	1	9	1	0	0	0	0	1	0	0	0	15463	652	23	1	652	1	STX2	12	131293210	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7224	131293210	2558685	13899	22050											
SFRS8	6433	broad.mit.edu	37	chr12	132250702	132250702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctcgcagctgctgcccGggaaaagctggcccaggcgt	14	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132250702	T	T	132250702	3	4	9	1	0	0	0	0	1	0	0	0	14296	1116	39	1	2041	1	SFRS8	12	132250702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	957492	132250702	1601193	13900	22051											
EP400	57634	broad.mit.edu	37	chr12	132466550	132466550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtcttggacaagcactGgggtgttagacgtgtctcct	15	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132466550	T	T	132466550	1	4	9	0	1	0	0	0	0	0	0	0	5191	1363	47	2		2	EP400	12	132466550	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	215848	132466550	1385345	13901	22052											
EP400	57634	broad.mit.edu	37	chr12	132474714	132474714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctggtgaggccacttccCgagaccagagctcgggcacc	14	14	0	3	rs114248835	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132474714	A	A	132474714	1	1	9	0	1	0	0	0	0	0	0	0	5191	667	23	1		1	EP400	12	132474714	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8164	132474714	1377181	13902	22053											
EP400	57634	broad.mit.edu	37	chr12	132515714	132515714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtattcaagtcatctccCttcatggtcaacagtgaggt	8	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132515714	A	A	132515714	1	1	9	0	1	0	0	0	0	0	0	0	5191	696	24	2		2	EP400	12	132515714	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	41000	132515714	1336181	13903	22054											
EP400	57634	broad.mit.edu	37	chr12	132528716	132528716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttcttgctgctctcccCgtcaggacgcagtgatgact	10	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132528716	A	A	132528716	1	1	9	0	1	0	0	0	0	0	0	0	5191	667	23	1		1	EP400	12	132528716	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13002	132528716	1323179	13904	22055											
EP400	57634	broad.mit.edu	37	chr12	132537799	132537799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcccttctgcttgagtGggaaaatgtggtgactgtga	15	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132537799	T	T	132537799	1	4	9	0	1	0	0	0	0	0	0	0	5191	1363	47	2		2	EP400	12	132537799	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9083	132537799	1314096	13905	22056											
EP400	57634	broad.mit.edu	37	chr12	132539560	132539560	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttactgggacgagcatgccCactggtaagacaaatacaga	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132539560	A	A	132539560	2	1	9	1	0	0	0	0	0	0	0	1	5191	581	21	2		2	EP400	12	132539560	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1761	132539560	1312335	13906	22057											
NOC4L	79050	broad.mit.edu	37	chr12	132635876	132635876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacgtcaagtaccgcgccCgcttcttccacctggctgac	8	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132635876	A	A	132635876	3	1	9	1	0	0	0	0	1	0	0	0	10610	652	23	1	1078	1	NOC4L	12	132635876	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	96316	132635876	1216019	13907	22058											
POLE	5426	broad.mit.edu	37	chr12	133219467	133219467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaggtcagtttctgccCgaacttcgaaggtgtgtttg	11	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133219467	A	A	133219467	3	1	9	1	0	0	0	0	1	0	0	0	12291	652	23	1	2249	1	POLE	12	133219467	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	583591	133219467	632428	13908	22059											
POLE	5426	broad.mit.edu	37	chr12	133220441	133220441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgagtctcatatacgccCtcgatgtctggcgctgacag	10	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133220441	A	A	133220441	3	1	9	1	0	0	0	0	1	0	0	0	12291	680	24	2	2656	2	POLE	12	133220441	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	974	133220441	631454	13909	22060											
POLE	5426	broad.mit.edu	37	chr12	133234520	133234520	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagaaagtgcttcctcacCgtgggctctgcttggaaaat	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133234520	A	A	133234520	2	1	9	1	0	0	0	0	0	0	0	1	12291	639	23	1		1	POLE	12	133234520	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14079	133234520	617375	13910	22061											
POLE	5426	broad.mit.edu	37	chr12	133236034	133236034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgtaatcttccagcttcCgagacatggaacggttctca	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133236034	A	A	133236034	3	1	9	1	0	0	0	0	1	0	0	0	12291	652	23	1	3834	1	POLE	12	133236034	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1514	133236034	615861	13911	22062											
POLE	5426	broad.mit.edu	37	chr12	133237686	133237686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatcagctgcagttcccCgcggcgtttgacctcaaagc	9	14	2	1	rs142563997		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133237686	A	A	133237686	3	1	9	1	0	0	0	0	1	0	0	0	12291	652	23	1	4031	1	POLE	12	133237686	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1652	133237686	614209	13912	22063											
POLE	5426	broad.mit.edu	37	chr12	133237960	133237960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagccagaatacagcaggcGggcagacagagctggtgcaa	15	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133237960	T	T	133237960	1	4	9	0	1	0	0	0	0	0	0	0	12291	1131	39	1		1	POLE	12	133237960	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	274	133237960	613935	13913	22064											
POLE	5426	broad.mit.edu	37	chr12	133244162	133244162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtagaaggagttttccCgctggcagatggtggtgaga	15	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133244162	A	A	133244162	3	1	9	1	0	0	0	0	1	0	0	0	12291	652	23	1	4734	1	POLE	12	133244162	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6202	133244162	607733	13914	22065											
POLE	5426	broad.mit.edu	37	chr12	133245001	133245001	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggacagttcatgaaaggccCgagctggcccctctgggaac	14	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133245001	G	G	133245001	3	3	9	1	0	0	0	0	1	0	0	0	12291	652	23	4	4870	4	POLE	12	133245001	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	839	133245001	606894	13915	22066											
POLE	5426	broad.mit.edu	37	chr12	133248877	133248877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaaggtcttctcaaccCgctgcagcaggaagtcaaag	12	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133248877	A	A	133248877	3	1	9	1	0	0	0	0	1	0	0	0	12291	652	23	1	5278	1	POLE	12	133248877	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3876	133248877	603018	13916	22067											
POLE	5426	broad.mit.edu	37	chr12	133252086	133252086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaccgtggactgctgccCgggcctccacaaatggcctg	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133252086	A	A	133252086	3	1	9	1	0	0	0	0	1	0	0	0	12291	652	23	1	5888	1	POLE	12	133252086	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3209	133252086	599809	13917	22068											
PXMP2	5827	broad.mit.edu	37	chr12	133277817	133277817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgagactgttcaccaccCgccttccctcctttgcaggg	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133277817	A	A	133277817	1	1	9	0	1	0	0	0	0	0	0	0	12958	667	23	1		1	PXMP2	12	133277817	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25731	133277817	574078	13918	22069											
ANKLE2	23141	broad.mit.edu	37	chr12	133304629	133304629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacatacctctgtctgtcCgagggtgagtagcacaggac	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133304629	A	A	133304629	2	1	9	1	0	0	0	0	0	0	0	1	633	639	23	1		1	ANKLE2	12	133304629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26812	133304629	547266	13919	22070											
ANKLE2	23141	broad.mit.edu	37	chr12	133311120	133311120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacagcccagaaattccCagtattcaacccagggatac	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133311120	A	A	133311120	3	1	9	1	0	0	0	0	1	0	0	0	633	595	21	2	1090	2	ANKLE2	12	133311120	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6491	133311120	540775	13920	22071											
ANKLE2	23141	broad.mit.edu	37	chr12	133311132	133311132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattcccagtattcaaccCagggataccccagctcatga	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133311132	A	A	133311132	3	1	9	1	0	0	0	0	1	0	0	0	633	595	21	2	1102	2	ANKLE2	12	133311132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	133311132	540763	13921	22072											
ANKLE2	23141	broad.mit.edu	37	chr12	133312019	133312019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctcaaagcctctttccGggtccgacttcttgacgtgg	9	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133312019	T	T	133312019	3	4	9	1	0	0	0	0	1	0	0	0	633	1116	39	1	1163	1	ANKLE2	12	133312019	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	887	133312019	539876	13922	22073											
GOLGA3	2802	broad.mit.edu	37	chr12	133358896	133358896	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatacctgaaggttcaactGgactaggtctgcctccctct	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133358896	T	T	133358896	3	4	9	1	0	0	0	0	1	0	0	0	6618	1357	47	2	1077	2	GOLGA3	12	133358896	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46877	133358896	492999	13923	22074											
GOLGA3	2802	broad.mit.edu	37	chr12	133358952	133358952	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaggatgctgttgtgttccCgcagagctgcgttggactga	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133358952	G	G	133358952	3	3	9	1	0	0	0	0	1	0	0	0	6618	652	23	4	1133	4	GOLGA3	12	133358952	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	133358952	492943	13924	22075											
GOLGA3	2802	broad.mit.edu	37	chr12	133363283	133363283	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacatgcagacttacttccGggcctcttgctgcaactctt	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133363283	T	T	133363283	2	4	9	1	0	0	0	0	0	0	0	1	6618	1115	39	1		1	GOLGA3	12	133363283	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4331	133363283	488612	13925	22076											
GOLGA3	2802	broad.mit.edu	37	chr12	133384914	133384914	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcttcagttctgtaatcGgccagagaccggattttgct	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133384914	T	T	133384914	2	4	9	1	0	0	0	0	0	0	0	1	6618	1103	39	1		1	GOLGA3	12	133384914	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21631	133384914	466981	13926	22077											
GOLGA3	2802	broad.mit.edu	37	chr12	133384925	133384925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaatcggccagagaccGgattttgcttgatttggaag	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133384925	T	T	133384925	2	4	9	1	0	0	0	0	0	0	0	1	6618	1115	39	1		1	GOLGA3	12	133384925	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	133384925	466970	13927	22078											
CHFR	55743	broad.mit.edu	37	chr12	133433143	133433143	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaagaccgcctgactttGggctgcagcatgtcttgagt	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133433143	T	T	133433143	2	4	9	1	0	0	0	0	0	0	0	1	3368	1335	47	2		2	CHFR	12	133433143	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48218	133433143	418752	13928	22079											
CHFR	55743	broad.mit.edu	37	chr12	133433247	133433247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggacacagcgccattcacCggcagtgagacatggcaggc	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133433247	A	A	133433247	1	1	9	0	1	0	0	0	0	0	0	0	3368	667	23	1		1	CHFR	12	133433247	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	133433247	418648	13929	22080											
ZNF140	7699	broad.mit.edu	37	chr12	133682846	133682846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccatacaaccaaaacccCgtatgaatgtaatgaatgta	5	10	0	2	rs145642591		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133682846	A	A	133682846	3	1	9	1	0	0	0	0	1	0	0	0	17855	652	23	1	997	1	ZNF140	12	133682846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	249599	133682846	169049	13930	22081											
ZNF10	7556	broad.mit.edu	37	chr12	133732292	133732292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggcaagtggcattcaccCaaaagaaagtacttactcag	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133732292	A	A	133732292	3	1	9	1	0	0	0	0	1	0	0	0	17838	595	21	2	474	2	ZNF10	12	133732292	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49446	133732292	119603	13931	22082											
TUBA3C	7278	broad.mit.edu	37	chr13	19751457	19751457	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgattgaggttggtgtacgtGggacgctcgatgtccaggtt	16	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751457	T	T	19751457	2	4	9	1	0	0	0	0	0	0	0	1	16872	1335	47	2		2	TUBA3C	13	19751457	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08		19751457	95418421	13932	22083											
TPTE2	93492	broad.mit.edu	37	chr13	20039429	20039429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctaggtcaaatccatcCcttgtgtatcgccttttgtt	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20039429	A	A	20039429	3	1	9	1	0	0	0	0	1	0	0	0	16555	622	22	2	974	2	TPTE2	13	20039429	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	287972	20039429	95130449	13933	22084											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20221185	20221185	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtgctgaggaggatacCgatgtcagaggcaggaggaa	17	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20221185	A	A	20221185	2	1	9	1	0	0	0	0	0	0	0	1	9821	639	23	1		1	MPHOSPH8	13	20221185	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	181756	20221185	94948693	13934	22085											
PSPC1	55269	broad.mit.edu	37	chr13	20304444	20304444	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcctgttctctgtgtcGgatcatttcttcctcacgcc	6	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20304444	T	T	20304444	2	4	9	1	0	0	0	0	0	0	0	1	12822	1124	39	1		1	PSPC1	13	20304444	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83259	20304444	94865434	13935	22086											
PSPC1	55269	broad.mit.edu	37	chr13	20356554	20356554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagccgaagccacggtccCggttgatgaagacttcgctg	13	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20356554	A	A	20356554	3	1	9	1	0	0	0	0	1	0	0	0	12822	652	23	1	1263	1	PSPC1	13	20356554	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52110	20356554	94813324	13936	22087											
ZMYM5	9205	broad.mit.edu	37	chr13	20425560	20425560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccacattcattctaccaGggttaaaaggtcttactcca	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20425560	T	T	20425560	3	4	9	1	0	0	0	0	1	0	0	0	17829	1000	35	2	1619	2	ZMYM5	13	20425560	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69006	20425560	94744318	13937	22088											
ZMYM2	7750	broad.mit.edu	37	chr13	20567831	20567831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaattagaaaatactgacGggcgagatatgaacttaatg	10	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20567831	T	T	20567831	3	4	9	1	0	0	0	0	1	0	0	0	17826	1116	39	1	621	1	ZMYM2	13	20567831	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	142271	20567831	94602047	13938	22089											
ZMYM2	7750	broad.mit.edu	37	chr13	20567949	20567949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatatacaaacatacacccCatctttaacttcacagacca	1	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20567949	A	A	20567949	3	1	9	1	0	0	0	0	1	0	0	0	17826	594	21	2	739	2	ZMYM2	13	20567949	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118	20567949	94601929	13939	22090											
ZMYM2	7750	broad.mit.edu	37	chr13	20660062	20660062	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacgtctacttcactggacCgaaacaccttggaaaatatg	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20660062	A	A	20660062	2	1	9	1	0	0	0	0	0	0	0	1	17826	644	23	1		1	ZMYM2	13	20660062	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92113	20660062	94509816	13940	22091											
CRYL1	51084	broad.mit.edu	37	chr13	21013823	21013823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggaactgcttaagatcactCgatcatcaatgatggaatct	8	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21013823	A	A	21013823	3	1	9	1	0	0	0	0	1	0	0	0	3952	884	31	3	632	3	CRYL1	13	21013823	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	353761	21013823	94156055	13941	22092											
IFT88	8100	broad.mit.edu	37	chr13	21182198	21182198	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctcttcccccagcacGgggactatcatggctgcaac	9	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21182198	C	C	21182198	1	2	9	0	1	0	0	0	0	0	0	0	7636	1131	39	4		4	IFT88	13	21182198	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	168375	21182198	93987680	13942	22093											
IFT88	8100	broad.mit.edu	37	chr13	21245148	21245148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatggcagtgggggctccCgtggcaaaagagaaggaagt	18	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21245148	A	A	21245148	3	1	9	1	0	0	0	0	1	0	0	0	7636	652	23	1	2333	1	IFT88	13	21245148	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62950	21245148	93924730	13943	22094											
N6AMT2	221143	broad.mit.edu	37	chr13	21303283	21303283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactcatttgccaagttcCgggtgtgtcttggaacaaac	10	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21303283	A	A	21303283	3	1	9	1	0	0	0	0	1	0	0	0	10209	652	23	1	67	1	N6AMT2	13	21303283	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58135	21303283	93866595	13944	22095											
N6AMT2	221143	broad.mit.edu	37	chr13	21306003	21306003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacagcagaatcttgcccCgcgtcaggtacttgacggtt	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21306003	A	A	21306003	3	1	9	1	0	0	0	0	1	0	0	0	10209	652	23	1	167	1	N6AMT2	13	21306003	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2720	21306003	93863875	13945	22096											
XPO4	64328	broad.mit.edu	37	chr13	21373337	21373337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtttggtttctgtgtcCatatgtgcaaaacctcctaa	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21373337	A	A	21373337	3	1	9	1	0	0	0	0	1	0	0	0	17573	594	21	2	1198	2	XPO4	13	21373337	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67334	21373337	93796541	13946	22097											
LATS2	26524	broad.mit.edu	37	chr13	21557911	21557911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctggtagaggatcttcCgcatctgctcctgctcagct	9	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21557911	A	A	21557911	3	1	9	1	0	0	0	0	1	0	0	0	8719	652	23	1	1348	1	LATS2	13	21557911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	184574	21557911	93611967	13947	22098											
LATS2	26524	broad.mit.edu	37	chr13	21562182	21562182	+	Silent	SNP	G	T	T													tctctgctgtttttgcggacGggaacgggagaggtctgaat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21562182	T	T	21562182	2	4	9	1	0	0	0	0	0	0	0	1	8719	1103	39	1		1	LATS2	13	21562182	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4271	21562182	93607696	13948	22099	147	2									
LATS2	26524	broad.mit.edu	37	chr13	21562188	21562188	+	Silent	SNP	G	T	T													ctgtttttgcggacgggaacGggagaggtctgaatctgctt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21562188	T	T	21562188	2	4	9	1	0	0	0	0	0	0	0	1	8719	1103	39	1		1	LATS2	13	21562188	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	21562188	93607690	13949	22100	147	2									
LATS2	26524	broad.mit.edu	37	chr13	21620052	21620052	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcactgtttggtcctgcGggtagcccctgaaccgaaga	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21620052	T	T	21620052	2	4	9	1	0	0	0	0	0	0	0	1	8719	1103	39	1		1	LATS2	13	21620052	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57864	21620052	93549826	13950	22101											
SAP18	10284	broad.mit.edu	37	chr13	21715044	21715044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgcccactgttgctacGggtcttcaccaccaataacg	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21715044	T	T	21715044	3	4	9	1	0	0	0	0	1	0	0	0	13943	1116	39	1	155	1	SAP18	13	21715044	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	94992	21715044	93454834	13951	22102											
SAP18	10284	broad.mit.edu	37	chr13	21715085	21715085	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccgccaccaccgaatggacGagttctcccggggaaatgta	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21715085	T	T	21715085	4	4	9	1	0	0	0	0	0	1	0	0	13943	1059	37	3	196	3	SAP18	13	21715085	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41	21715085	93454793	13952	22103											
SAP18	10284	broad.mit.edu	37	chr13	21721444	21721444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaattacccctccaaatcGggcaccacctccttcagggc	7	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21721444	T	T	21721444	3	4	9	1	0	0	0	0	1	0	0	0	13943	1116	39	1	496	1	SAP18	13	21721444	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6359	21721444	93448434	13953	22104											
EFHA1	221154	broad.mit.edu	37	chr13	22088421	22088421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatctattggtaactatcGggaatatctgaacaaacaaa	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22088421	T	T	22088421	1	4	9	0	1	0	0	0	0	0	0	0	4983	1131	39	1		1	EFHA1	13	22088421	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	366977	22088421	93081457	13954	22105											
SACS	26278	broad.mit.edu	37	chr13	23904859	23904859	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttgtctgactgaaatcGggatgctgaggttgaaaatg	13	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23904859	T	T	23904859	2	4	9	1	0	0	0	0	0	0	0	1	13915	1124	39	1		1	SACS	13	23904859	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1816438	23904859	91265019	13955	22106											
SACS	26278	broad.mit.edu	37	chr13	23908465	23908465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcataaacaagtctttgcGggatggaatcaattcatgat	8	6	4	1	rs143557803	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23908465	T	T	23908465	3	4	9	1	0	0	0	0	1	0	0	0	13915	1116	39	1	4193	1	SACS	13	23908465	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3606	23908465	91261413	13956	22107											
SACS	26278	broad.mit.edu	37	chr13	23910526	23910526	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcgctttgggactgctcCtagttttactgctacttccc	9	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23910526	A	A	23910526	4	1	9	1	0	0	0	0	0	1	0	0	13915	690	24	2	6254	2	SACS	13	23910526	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2061	23910526	91259352	13957	22108											
TNFRSF19	55504	broad.mit.edu	37	chr13	24234497	24234497	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgacagagttctcacccctCatttagggtctctgcggtca	9	13	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24234497	A	A	24234497	1	1	9	0	1	0	0	0	0	0	0	0	16415	841	29	3		3	TNFRSF19	13	24234497	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	323971	24234497	90935381	13958	22109											
MIPEP	4285	broad.mit.edu	37	chr13	24334383	24334383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagagagacacagcacGggacacaagtcagtttccac	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24334383	T	T	24334383	1	4	9	0	1	0	0	0	0	0	0	0	9685	1131	39	1		1	MIPEP	13	24334383	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	99886	24334383	90835495	13959	22110											
MIPEP	4285	broad.mit.edu	37	chr13	24410442	24410442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcatttgcaaagtactcCatcagaatagaaggaacctc	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24410442	A	A	24410442	3	1	9	1	0	0	0	0	1	0	0	0	9685	594	21	2	575	2	MIPEP	13	24410442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76059	24410442	90759436	13960	22111											
MIPEP	4285	broad.mit.edu	37	chr13	24411709	24411709	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagtgacgtgttggtaacGagtacgtcctagcattgaat	11	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24411709	T	T	24411709	3	4	9	1	0	0	0	0	1	0	0	0	9685	1058	37	3	644	3	MIPEP	13	24411709	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1267	24411709	90758169	13961	22112											
MIPEP	4285	broad.mit.edu	37	chr13	24411743	24411743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaatgcatggcatgtccCatttcatggaaaagattttc	8	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24411743	A	A	24411743	3	1	9	1	0	0	0	0	1	0	0	0	9685	594	21	2	678	2	MIPEP	13	24411743	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	24411743	90758135	13962	22113											
MIPEP	4285	broad.mit.edu	37	chr13	24449046	24449046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acataaacagttcagccactCgcctataaatgaaatgagcc	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24449046	A	A	24449046	3	1	9	1	0	0	0	0	1	0	0	0	9685	884	31	3	1659	3	MIPEP	13	24449046	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37303	24449046	90720832	13963	22114											
MIPEP	4285	broad.mit.edu	37	chr13	24460636	24460636	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcagctcaggaactcCaaaaagacccttagaaccaa	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24460636	A	A	24460636	4	1	9	1	0	0	0	0	0	1	0	0	9685	603	21	2	2014	2	MIPEP	13	24460636	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11590	24460636	90709242	13964	22115											
C1QTNF9	338872	broad.mit.edu	37	chr13	24892980	24892980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggacgtcctggcagccCggggaaggatgggacgagtg	18	10	0	0	rs144539792		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24892980	A	A	24892980	3	1	9	1	0	0	0	0	1	0	0	0	1990	652	23	1	197	1	C1QTNF9	13	24892980	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	432344	24892980	90276898	13965	22116											
C1QTNF9	338872	broad.mit.edu	37	chr13	24892991	24892991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagcccggggaaggatGggacgagtggagagaaggga	21	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24892991	T	T	24892991	3	4	9	1	0	0	0	0	1	0	0	0	1990	1348	47	2	208	2	C1QTNF9	13	24892991	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	24892991	90276887	13966	22117											
C1QTNF9	338872	broad.mit.edu	37	chr13	24893030	24893030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaacgaggttagtagttcCtatttatggtgctctaattc	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24893030	A	A	24893030	1	1	9	0	1	0	0	0	0	0	0	0	1990	696	24	2		2	C1QTNF9	13	24893030	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	24893030	90276848	13967	22118											
C1QTNF9	338872	broad.mit.edu	37	chr13	24895618	24895618	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccattatgatacagcagcGgggaaattcacgtgccacat	9	10	1	1	rs140557863		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24895618	T	T	24895618	2	4	9	1	0	0	0	0	0	0	0	1	1990	1103	39	1		1	C1QTNF9	13	24895618	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2588	24895618	90274260	13968	22119											
PARP4	143	broad.mit.edu	37	chr13	25008561	25008561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagactgaggagttctgtcCaaggcacagcatcctgccag	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25008561	A	A	25008561	3	1	9	1	0	0	0	0	1	0	0	0	11557	595	21	2	472	2	PARP4	13	25008561	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	112943	25008561	90161317	13969	22120											
PARP4	143	broad.mit.edu	37	chr13	25023906	25023906	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaaatattcaaatactcCggcaccacactgggacaaaa	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25023906	A	A	25023906	4	1	9	1	0	0	0	0	0	1	0	0	11557	661	23	1	2150	1	PARP4	13	25023906	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15345	25023906	90145972	13970	22121											
PARP4	143	broad.mit.edu	37	chr13	25034320	25034320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaacttgaaagcataccCattatatgccagctaactcc	4	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25034320	A	A	25034320	1	1	9	0	1	0	0	0	0	0	0	0	11557	609	21	2		2	PARP4	13	25034320	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10414	25034320	90135558	13971	22122											
PARP4	143	broad.mit.edu	37	chr13	25058831	25058831	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcccacttccaaggtttcCgacgtctgttctttgcacac	6	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25058831	A	A	25058831	4	1	9	1	0	0	0	0	0	1	0	0	11557	661	23	1	3858	1	PARP4	13	25058831	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24511	25058831	90111047	13972	22123											
PARP4	143	broad.mit.edu	37	chr13	25066717	25066717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttactagaaggagaatccCctctgccttgctcacctttc	6	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25066717	A	A	25066717	3	1	9	1	0	0	0	0	1	0	0	0	11557	623	22	2	4383	2	PARP4	13	25066717	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7886	25066717	90103161	13973	22124											
ATP12A	479	broad.mit.edu	37	chr13	25259551	25259551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttggaagagaagcctccCaactctacagagggaaggct	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25259551	A	A	25259551	1	1	9	0	1	0	0	0	0	0	0	0	1126	609	21	2		2	ATP12A	13	25259551	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	192834	25259551	89910327	13974	22125											
ATP12A	479	broad.mit.edu	37	chr13	25262494	25262494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgccgagctcctggcccGggatgggcccaactccctca	12	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25262494	T	T	25262494	3	4	9	1	0	0	0	0	1	0	0	0	1126	1116	39	1	280	1	ATP12A	13	25262494	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2943	25262494	89907384	13975	22126											
ATP12A	479	broad.mit.edu	37	chr13	25262564	25262564	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcctcaagcagatggtGggggggttctctatcctcct	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25262564	T	T	25262564	2	4	9	1	0	0	0	0	0	0	0	1	1126	1335	47	2		2	ATP12A	13	25262564	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	25262564	89907314	13976	22127											
ATP12A	479	broad.mit.edu	37	chr13	25262652	25262652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgacaagtctgcatccCtgaacaacgtaaggctctgg	10	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25262652	A	A	25262652	3	1	9	1	0	0	0	0	1	0	0	0	1126	680	24	2	438	2	ATP12A	13	25262652	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	25262652	89907226	13977	22128											
ATP12A	479	broad.mit.edu	37	chr13	25281355	25281355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtctcagggggtcttccCaagggccagggtggtctggg	18	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25281355	A	A	25281355	1	1	9	0	1	0	0	0	0	0	0	0	1126	609	21	2		2	ATP12A	13	25281355	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18703	25281355	89888523	13978	22129											
ATP12A	479	broad.mit.edu	37	chr13	25281479	25281479	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctgaccaagaacattgccGagctgtgcccctttctgatc	8	15	1	3	rs7328155		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25281479	T	T	25281479	4	4	9	1	0	0	0	0	0	1	0	0	1126	1059	37	3	2485	3	ATP12A	13	25281479	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	124	25281479	89888399	13979	22130											
RNF17	56163	broad.mit.edu	37	chr13	25399895	25399895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagatggaatttggtacCgagcaaaagttatcggtagg	13	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25399895	A	A	25399895	2	1	9	1	0	0	0	0	0	0	0	1	13572	644	23	1		1	RNF17	13	25399895	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	118416	25399895	89769983	13980	22131											
CENPJ	55835	broad.mit.edu	37	chr13	25457411	25457411	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaccgtttgcatatacGgttttaacagtgccatctgg	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25457411	T	T	25457411	2	4	9	1	0	0	0	0	0	0	0	1	3264	1103	39	1		1	CENPJ	13	25457411	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57516	25457411	89712467	13981	22132											
CENPJ	55835	broad.mit.edu	37	chr13	25457439	25457439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgccatctgggtattccCgtctcttgaactgggcagta	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25457439	A	A	25457439	3	1	9	1	0	0	0	0	1	0	0	0	3264	652	23	1	127	1	CENPJ	13	25457439	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	25457439	89712439	13982	22133											
CENPJ	55835	broad.mit.edu	37	chr13	25463493	25463493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttgtatttttctacctGggttcctgaagaaatctgac	7	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25463493	T	T	25463493	3	4	9	1	0	0	0	0	1	0	0	0	3264	1357	47	2	782	2	CENPJ	13	25463493	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6054	25463493	89706385	13983	22134											
CENPJ	55835	broad.mit.edu	37	chr13	25466881	25466881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcacttttatttcttccCggaggtctgtgttctctctg	7	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25466881	A	A	25466881	3	1	9	1	0	0	0	0	1	0	0	0	3264	652	23	1	932	1	CENPJ	13	25466881	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3388	25466881	89702997	13984	22135											
MTMR6	9107	broad.mit.edu	37	chr13	25848197	25848197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgataaatagtacagctgcGgtcctccttacccaggtttc	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25848197	T	T	25848197	1	4	9	0	1	0	0	0	0	0	0	0	10041	1131	39	1		1	MTMR6	13	25848197	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	381316	25848197	89321681	13985	22136											
NUPL1	9818	broad.mit.edu	37	chr13	25889500	25889500	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttttatttataggacttGgacagaatgctttagggttg	11	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25889500	T	T	25889500	4	4	9	1	0	0	0	0	0	1	0	0	10869	1349	47	2	602	2	NUPL1	13	25889500	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41303	25889500	89280378	13986	22137											
NUPL1	9818	broad.mit.edu	37	chr13	25893474	25893474	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttctaggtgataaaacGggaacaagaccagagtaagt	10	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25893474	T	T	25893474	2	4	9	1	0	0	0	0	0	0	0	1	10869	1103	39	1		1	NUPL1	13	25893474	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3974	25893474	89276404	13987	22138											
NUPL1	9818	broad.mit.edu	37	chr13	25893508	25893508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaagtttacaaatttaccCttaaggcattttaattgaag	6	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25893508	A	A	25893508	1	1	9	0	1	0	0	0	0	0	0	0	10869	696	24	2		2	NUPL1	13	25893508	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	25893508	89276370	13988	22139											
ATP8A2	51761	broad.mit.edu	37	chr13	26138096	26138096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgttctctcttacagtcGgatgcctcctccctgtagtg	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26138096	T	T	26138096	3	4	9	1	0	0	0	0	1	0	0	0	1197	1116	39	1	1462	1	ATP8A2	13	26138096	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	244588	26138096	89031782	13989	22140											
RNF6	6049	broad.mit.edu	37	chr13	26788778	26788778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctatttgcaatactatccCgatctctattttctccagga	4	11	3	0	rs142805604	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26788778	A	A	26788778	3	1	9	1	0	0	0	0	1	0	0	0	13609	652	23	1	820	1	RNF6	13	26788778	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	650682	26788778	88381100	13990	22141											
CDK8	1024	broad.mit.edu	37	chr13	26911747	26911747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaacaaatagaaggaactGggatctctatgtcggcatgt	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26911747	T	T	26911747	3	4	9	1	0	0	0	0	1	0	0	0	3180	1348	47	2	178	2	CDK8	13	26911747	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	122969	26911747	88258131	13991	22142											
CDK8	1024	broad.mit.edu	37	chr13	26978035	26978035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacacttcagtcacatattGggattgagcttcccctagaa	8	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26978035	T	T	26978035	1	4	9	0	1	0	0	0	0	0	0	0	3180	1363	47	2		2	CDK8	13	26978035	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	66288	26978035	88191843	13992	22143											
CDK8	1024	broad.mit.edu	37	chr13	26978119	26978119	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccacatgctgcctatccCaaccctggaccaagcacatc	5	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26978119	A	A	26978119	2	1	9	1	0	0	0	0	0	0	0	1	3180	581	21	2		2	CDK8	13	26978119	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	26978119	88191759	13993	22144											
GPR12	2835	broad.mit.edu	37	chr13	27333871	27333871	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggctctacggcaggaacccGggaggagacagcagccgaga	16	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27333871	C	C	27333871	3	2	9	1	0	0	0	0	1	0	0	0	6700	1115	39	4	914	4	GPR12	13	27333871	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	355752	27333871	87836007	13994	22145											
USP12	219333	broad.mit.edu	37	chr13	27643427	27643427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacggttccctctcagtccCgagactgatagaaaaggatg	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27643427	A	A	27643427	3	1	9	1	0	0	0	0	1	0	0	0	17169	652	23	1	10	1	USP12	13	27643427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	309556	27643427	87526451	13995	22146											
FLT3	2322	broad.mit.edu	37	chr13	28623785	28623785	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattacctcctcgagtgctTtgttttctaattcccaggtg	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28623785	G	G	28623785	3	3	9	1	0	0	0	0	1	0	0	0	6000	1841	64	5	2184	5	FLT3	13	28623785	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	980358	28623785	86546093	13996	22147											
PAN3	255967	broad.mit.edu	37	chr13	28830446	28830446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaatgtcgttgtctgctGggtcttcccctcttcattcc	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28830446	T	T	28830446	3	4	9	1	0	0	0	0	1	0	0	0	11509	1348	47	2	1044	2	PAN3	13	28830446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	206661	28830446	86339432	13997	22148											
PAN3	255967	broad.mit.edu	37	chr13	28844898	28844898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgccagaatctcttatttGggcatatattgtccaactaa	6	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28844898	T	T	28844898	3	4	9	1	0	0	0	0	1	0	0	0	11509	1357	47	2	1903	2	PAN3	13	28844898	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14452	28844898	86324980	13998	22149											
PAN3	255967	broad.mit.edu	37	chr13	28854543	28854543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaattcctcttttatcttGggtaggtatttgttgactga	9	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28854543	T	T	28854543	1	4	9	0	1	0	0	0	0	0	0	0	11509	1363	47	2		2	PAN3	13	28854543	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9645	28854543	86315335	13999	22150											
PAN3	255967	broad.mit.edu	37	chr13	28866697	28866697	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggacatggctaaagacCttaaccaatagcaaattgca	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28866697	A	A	28866697	1	1	9	0	1	0	0	0	0	0	0	0	11509	696	24	2		2	PAN3	13	28866697	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	12154	28866697	86303181	14000	22151											
FLT1	2321	broad.mit.edu	37	chr13	28896903	28896903	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatatctcagcgcgtaGgacaggaaggaattaatacc	9	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28896903	C	C	28896903	1	2	9	0	1	0	0	0	0	0	0	0	5999	1015	35	4		4	FLT1	13	28896903	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30206	28896903	86272975	14001	22152											
FLT1	2321	broad.mit.edu	37	chr13	28908128	28908128	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaaatgcaaaatggtgatGggtcagttgaaagccaaact	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28908128	C	C	28908128	1	2	9	0	1	0	0	0	0	0	0	0	5999	1363	47	4		4	FLT1	13	28908128	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11225	28908128	86261750	14002	22153											
FLT1	2321	broad.mit.edu	37	chr13	28959074	28959074	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaagtgatctgaggctcGgggacaccattagcatgaca	11	10	1	3	rs148165829	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28959074	T	T	28959074	2	4	9	1	0	0	0	0	0	0	0	1	5999	1103	39	1		1	FLT1	13	28959074	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50946	28959074	86210804	14003	22154											
FLT1	2321	broad.mit.edu	37	chr13	28963971	28963971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctggaggatttcttccCctgtgtatacattcctggct	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28963971	A	A	28963971	3	1	9	1	0	0	0	0	1	0	0	0	5999	623	22	2	2342	2	FLT1	13	28963971	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4897	28963971	86205907	14004	22155											
FLT1	2321	broad.mit.edu	37	chr13	29041230	29041230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcgctttccttactcacCatttcaggcaaagaccattt	4	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29041230	A	A	29041230	3	1	9	1	0	0	0	0	1	0	0	0	5999	594	21	2	4193	2	FLT1	13	29041230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77259	29041230	86128648	14005	22156											
SLC7A1	6541	broad.mit.edu	37	chr13	30096467	30096467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcaccagcaacggcaccCgaggctaatgtggcgattat	10	12	1	0	rs150705194		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30096467	A	A	30096467	2	1	9	1	0	0	0	0	0	0	0	1	14806	639	23	1		1	SLC7A1	13	30096467	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1055237	30096467	85073411	14006	22157											
USPL1	10208	broad.mit.edu	37	chr13	31195275	31195275	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaattagccaatgactcGgaatgatggattctccgaag	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31195275	T	T	31195275	1	4	9	0	1	0	0	0	0	0	0	0	17219	1131	39	1		1	USPL1	13	31195275	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1098808	31195275	83974603	14007	22158											
HSPH1	10808	broad.mit.edu	37	chr13	31722576	31722576	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaactgcatctgtgacGgaaaattctctaactttaaa	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31722576	T	T	31722576	2	4	9	1	0	0	0	0	0	0	0	1	7501	1103	39	1		1	HSPH1	13	31722576	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	527301	31722576	83447302	14008	22159											
HSPH1	10808	broad.mit.edu	37	chr13	31729844	31729844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttaatttcaccacctacCagtaattttagtaattttat	2	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31729844	A	A	31729844	1	1	9	0	1	0	0	0	0	0	0	0	7501	609	21	2		2	HSPH1	13	31729844	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7268	31729844	83440034	14009	22160											
B3GALTL	145173	broad.mit.edu	37	chr13	31891624	31891624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattacacagtatacagagtGggatgtaagaaccataaact	8	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31891624	T	T	31891624	1	4	9	0	1	0	0	0	0	0	0	0	1257	1363	47	2		2	B3GALTL	13	31891624	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	161780	31891624	83278254	14010	22161											
B3GALTL	145173	broad.mit.edu	37	chr13	31897960	31897960	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctacagcaatgatgctccCgatgatatggtcctgggaat	11	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31897960	A	A	31897960	2	1	9	1	0	0	0	0	0	0	0	1	1257	639	23	1		1	B3GALTL	13	31897960	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6336	31897960	83271918	14011	22162											
B3GALTL	145173	broad.mit.edu	37	chr13	31903657	31903657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcggccggtggattaccCtaaggactacctttctcatc	10	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31903657	A	A	31903657	3	1	9	1	0	0	0	0	1	0	0	0	1257	681	24	2	1407	2	B3GALTL	13	31903657	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5697	31903657	83266221	14012	22163											
RXFP2	122042	broad.mit.edu	37	chr13	32332481	32332481	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttaccaagtgcttacccCgagcttttcactgtgatggc	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32332481	A	A	32332481	2	1	9	1	0	0	0	0	0	0	0	1	13871	644	23	1		1	RXFP2	13	32332481	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	428824	32332481	82837397	14013	22164											
RXFP2	122042	broad.mit.edu	37	chr13	32332520	32332520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggatgactgtgggaacGgggcggacgaagagaactgt	18	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32332520	T	T	32332520	3	4	9	1	0	0	0	0	1	0	0	0	13871	1116	39	1	226	1	RXFP2	13	32332520	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	32332520	82837358	14014	22165											
RXFP2	122042	broad.mit.edu	37	chr13	32376460	32376460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatctacatccattgtgtGgatagaggactcctcttccc	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32376460	T	T	32376460	3	4	9	1	0	0	0	0	1	0	0	0	13871	1357	47	2	2253	2	RXFP2	13	32376460	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43940	32376460	82793418	14015	22166											
FRY	10129	broad.mit.edu	37	chr13	32652988	32652988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttctcccgttggcaacGgttacatcaagcctccggtt	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32652988	T	T	32652988	3	4	9	1	0	0	0	0	1	0	0	0	6123	1116	39	1	94	1	FRY	13	32652988	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	276528	32652988	82516890	14016	22167											
FRY	10129	broad.mit.edu	37	chr13	32653073	32653073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacccatcaatgtggaccCagacagtaaaccaggagaat	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32653073	A	A	32653073	3	1	9	1	0	0	0	0	1	0	0	0	6123	594	21	2	179	2	FRY	13	32653073	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85	32653073	82516805	14017	22168											
FRY	10129	broad.mit.edu	37	chr13	32721512	32721512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatgtgaaagcaacacaGctactcagaggtaagatttg	9	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32721512	T	T	32721512	3	4	9	1	0	0	0	0	1	0	0	0	6123	971	34	3	1319	3	FRY	13	32721512	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68439	32721512	82448366	14018	22169											
FRY	10129	broad.mit.edu	37	chr13	32759238	32759238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattcttaaagatatccGggcacattttagtgcaatgg	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32759238	T	T	32759238	3	4	9	1	0	0	0	0	1	0	0	0	6123	1116	39	1	3374	1	FRY	13	32759238	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37726	32759238	82410640	14019	22170											
FRY	10129	broad.mit.edu	37	chr13	32776546	32776546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcgctgagcaaagaccGggaagtattctctatggaac	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32776546	T	T	32776546	2	4	9	1	0	0	0	0	0	0	0	1	6123	1103	39	1		1	FRY	13	32776546	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17308	32776546	82393332	14020	22171											
FRY	10129	broad.mit.edu	37	chr13	32783725	32783725	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttattttgttatagtatGgagatgaagttcctgggcca	10	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32783725	T	T	32783725	4	4	9	1	0	0	0	0	0	1	0	0	6123	1349	47	2	4409	2	FRY	13	32783725	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7179	32783725	82386153	14021	22172											
FRY	10129	broad.mit.edu	37	chr13	32800029	32800029	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttccattccattgcttcCgtgctcctgcagacccgaga	7	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32800029	A	A	32800029	2	1	9	1	0	0	0	0	0	0	0	1	6123	639	23	1		1	FRY	13	32800029	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16304	32800029	82369849	14022	22173											
FRY	10129	broad.mit.edu	37	chr13	32849122	32849122	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacactttttgtggatgcCgagactgtgagtatcccagt	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32849122	A	A	32849122	2	1	9	1	0	0	0	0	0	0	0	1	6123	639	23	1		1	FRY	13	32849122	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49093	32849122	82320756	14023	22174											
BRCA2	675	broad.mit.edu	37	chr13	32893412	32893412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcaagggctgactctgcCgctgtaccaatctcctgtaa	10	12	2	2	rs80359341		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32893412	A	A	32893412	3	1	9	1	0	0	0	0	1	0	0	0	1508	652	23	1	272	1	BRCA2	13	32893412	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44290	32893412	82276466	14024	22175											
BRCA2	675	broad.mit.edu	37	chr13	32906709	32906709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccaaatgatactgatcCattagattcaaatgtagcaa	7	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32906709	A	A	32906709	3	1	9	1	0	0	0	0	1	0	0	0	1508	594	21	2	1128	2	BRCA2	13	32906709	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13297	32906709	82263169	14025	22176											
BRCA2	675	broad.mit.edu	37	chr13	32911270	32911270	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccattttcaagaactctacCatggttttatatggagacac	6	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32911270	A	A	32911270	2	1	9	1	0	0	0	0	0	0	0	1	1508	581	21	2		2	BRCA2	13	32911270	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4561	32911270	82258608	14026	22177											
BRCA2	675	broad.mit.edu	37	chr13	32915263	32915263	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctctttttacatgtccCgaaaatgaggaaatggtttt	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32915263	A	A	32915263	2	1	9	1	0	0	0	0	0	0	0	1	1508	639	23	1		1	BRCA2	13	32915263	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3993	32915263	82254615	14027	22178											
BRCA2	675	broad.mit.edu	37	chr13	32929040	32929040	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagaatccaaattttacCgcacctggtcaagaatttct	5	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32929040	A	A	32929040	2	1	9	1	0	0	0	0	0	0	0	1	1508	639	23	1		1	BRCA2	13	32929040	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13777	32929040	82240838	14028	22179											
BRCA2	675	broad.mit.edu	37	chr13	32971114	32971114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcccaagtggtccacccCaactaaagactgtacttcag	7	13	1	2	rs28897760		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32971114	A	A	32971114	3	1	9	1	0	0	0	0	1	0	0	0	1508	594	21	2	9679	2	BRCA2	13	32971114	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42074	32971114	82198764	14029	22180											
N4BP2L1	90634	broad.mit.edu	37	chr13	32977287	32977287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaacatcgtgttcatacCgttctttcattcggtggatt	8	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32977287	A	A	32977287	3	1	9	1	0	0	0	0	1	0	0	0	10205	652	23	1	211	1	N4BP2L1	13	32977287	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6173	32977287	82192591	14030	22181											
PDS5B	23047	broad.mit.edu	37	chr13	33250146	33250146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatacattattctactgacCgtttttttaagaaacattat	3	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33250146	A	A	33250146	1	1	9	0	1	0	0	0	0	0	0	0	11786	667	23	1		1	PDS5B	13	33250146	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	272859	33250146	81919732	14031	22182											
PDS5B	23047	broad.mit.edu	37	chr13	33268411	33268411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctccgacatcaagtaaaGgatttgcttgacttgattaa	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33268411	T	T	33268411	3	4	9	1	0	0	0	0	1	0	0	0	11786	991	35	2	1571	2	PDS5B	13	33268411	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18265	33268411	81901467	14032	22183											
PDS5B	23047	broad.mit.edu	37	chr13	33330113	33330113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaagactttttccatccCattttcatattttctgaaag	5	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33330113	A	A	33330113	1	1	9	0	1	0	0	0	0	0	0	0	11786	609	21	2		2	PDS5B	13	33330113	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	61702	33330113	81839765	14033	22184											
KL	9365	broad.mit.edu	37	chr13	33628229	33628229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttttcaacttttggaccCtcacatgaagttccgccaat	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33628229	A	A	33628229	3	1	9	1	0	0	0	0	1	0	0	0	8402	681	24	2	1151	2	KL	13	33628229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	298116	33628229	81541649	14034	22185											
STARD13	90627	broad.mit.edu	37	chr13	33692287	33692287	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaactgtttcaccatatcCgccacatcataagcagactg	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33692287	A	A	33692287	2	1	9	1	0	0	0	0	0	0	0	1	15374	639	23	1		1	STARD13	13	33692287	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64058	33692287	81477591	14035	22186											
STARD13	90627	broad.mit.edu	37	chr13	33700284	33700284	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaggcaggggctgtccCgttctttggacgtggactat	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33700284	A	A	33700284	2	1	9	1	0	0	0	0	0	0	0	1	15374	639	23	1		1	STARD13	13	33700284	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7997	33700284	81469594	14036	22187											
RFC3	5983	broad.mit.edu	37	chr13	34410463	34410463	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttattcttgcaaagatttctCagtatcagtatttacataca	4	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34410463	A	A	34410463	1	1	9	0	1	0	0	0	0	0	0	0	13354	841	29	3		3	RFC3	13	34410463	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	710179	34410463	80759415	14037	22188											
NBEA	26960	broad.mit.edu	37	chr13	35743090	35743090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttttcttgtactttttGgtctgttgtctgttttgtct	7	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35743090	T	T	35743090	1	4	9	0	1	0	0	0	0	0	0	0	10281	1363	47	2		2	NBEA	13	35743090	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1332627	35743090	79426788	14038	22189											
NBEA	26960	broad.mit.edu	37	chr13	35745589	35745589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgacagtgcctaagattaGgtaagtctgttaaaacaata	9	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35745589	T	T	35745589	3	4	9	1	0	0	0	0	1	0	0	0	10281	1014	35	2	4525	2	NBEA	13	35745589	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2499	35745589	79424289	14039	22190											
NBEA	26960	broad.mit.edu	37	chr13	35864607	35864607	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtacaaaatcccattcactCagttacattaatatatgagg	6	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35864607	A	A	35864607	1	1	9	0	1	0	0	0	0	0	0	0	10281	841	29	3		3	NBEA	13	35864607	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	119018	35864607	79305271	14040	22191											
MAB21L1	4081	broad.mit.edu	37	chr13	36049789	36049789	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaccacgtacctatctcGgattctcagtttcacttcgc	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36049789	T	T	36049789	2	4	9	1	0	0	0	0	0	0	0	1	9229	1124	39	1		1	MAB21L1	13	36049789	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	185182	36049789	79120089	14041	22192											
NBEA	26960	broad.mit.edu	37	chr13	36158093	36158093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagcgttatgagacatGggaagatgatcaaagcccac	12	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36158093	T	T	36158093	3	4	9	1	0	0	0	0	1	0	0	0	10281	1357	47	2	7276	2	NBEA	13	36158093	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	108304	36158093	79011785	14042	22193											
NBEA	26960	broad.mit.edu	37	chr13	36229746	36229746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagattgtatttggccattGggatgtggtcacttgcttgg	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36229746	T	T	36229746	3	4	9	1	0	0	0	0	1	0	0	0	10281	1357	47	2	8373	2	NBEA	13	36229746	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71653	36229746	78940132	14043	22194											
NBEA	26960	broad.mit.edu	37	chr13	36229774	36229774	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacttgcttggccaggtcCgagtcatacattggtgggga	14	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36229774	A	A	36229774	2	1	9	1	0	0	0	0	0	0	0	1	10281	639	23	1		1	NBEA	13	36229774	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	36229774	78940104	14044	22195											
NBEA	26960	broad.mit.edu	37	chr13	36229810	36229810	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggactgctacatcgtgtcCggatctcgagatgccaccct	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36229810	A	A	36229810	2	1	9	1	0	0	0	0	0	0	0	1	10281	639	23	1		1	NBEA	13	36229810	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	36229810	78940068	14045	22196											
NBEA	26960	broad.mit.edu	37	chr13	36241706	36241706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatcaatgattcaacacGggtaaatctgcatagttcgt	10	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36241706	T	T	36241706	3	4	9	1	0	0	0	0	1	0	0	0	10281	1130	39	1	8819	1	NBEA	13	36241706	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11896	36241706	78928172	14046	22197											
DCLK1	9201	broad.mit.edu	37	chr13	36362392	36362392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtagtagtccaaagaccCtgatctcttgatggtaaacc	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36362392	A	A	36362392	3	1	9	1	0	0	0	0	1	0	0	0	4324	681	24	2	108	2	DCLK1	13	36362392	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120686	36362392	78807486	14047	22198											
DCLK1	9201	broad.mit.edu	37	chr13	36383159	36383159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattgttgcccatacccacGgaatggagggaaaccacaca	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36383159	T	T	36383159	3	4	9	1	0	0	0	0	1	0	0	0	4324	1116	39	1	451	1	DCLK1	13	36383159	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20767	36383159	78786719	14048	22199											
DCLK1	9201	broad.mit.edu	37	chr13	36385009	36385009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggagccacgtatgttgGggtgccacagactgtgtaca	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36385009	T	T	36385009	3	4	9	1	0	0	0	0	1	0	0	0	4324	1232	43	2	566	2	DCLK1	13	36385009	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1850	36385009	78784869	14049	22200											
DCLK1	9201	broad.mit.edu	37	chr13	36686136	36686136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaatcctgacagctttcCgtggcttcacgccacttctg	9	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36686136	A	A	36686136	3	1	9	1	0	0	0	0	1	0	0	0	4324	652	23	1	1660	1	DCLK1	13	36686136	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	301127	36686136	78483742	14050	22201											
SPG20	23111	broad.mit.edu	37	chr13	36878595	36878595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctccttcttgattttcCctctgagaattatcaactat	5	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36878595	A	A	36878595	3	1	9	1	0	0	0	0	1	0	0	0	15160	622	22	2	96	2	SPG20	13	36878595	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	192459	36878595	78291283	14051	22202											
SPG20	23111	broad.mit.edu	37	chr13	36903547	36903547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatccttattgccttggtcCaactgtttcacatcagtgcc	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36903547	A	A	36903547	3	1	9	1	0	0	0	0	1	0	0	0	15160	593	21	2	908	2	SPG20	13	36903547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24952	36903547	78266331	14052	22203											
CCNA1	8900	broad.mit.edu	37	chr13	37016255	37016255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcaaattggttatcttcGgatatctaatataaagttat	5	4	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37016255	T	T	37016255	1	4	9	0	1	0	0	0	0	0	0	0	2939	1131	39	1		1	CCNA1	13	37016255	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	112708	37016255	78153623	14053	22204											
SMAD9	4093	broad.mit.edu	37	chr13	37422887	37422887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccagccactgcagtggccCatgaagatgaatctcaatcc	9	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37422887	A	A	37422887	3	1	9	1	0	0	0	0	1	0	0	0	14878	594	21	2	77	2	SMAD9	13	37422887	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	406632	37422887	77746991	14054	22205											
SMAD9	4093	broad.mit.edu	37	chr13	37453779	37453779	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagcagtctcttcactgcGgggctggtgaaggagaagag	15	9	2	3	rs151312678	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37453779	T	T	37453779	2	4	9	1	0	0	0	0	0	0	0	1	14878	1103	39	1		1	SMAD9	13	37453779	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30892	37453779	77716099	14055	22206											
FAM48A	55578	broad.mit.edu	37	chr13	37607595	37607595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcaattaccgtttcattGggcgagtgttcatcttttgc	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37607595	T	T	37607595	3	4	9	1	0	0	0	0	1	0	0	0	5623	1348	47	2	1709	2	FAM48A	13	37607595	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	153816	37607595	77562283	14056	22207											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37678873	37678873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtttatcttctctgtacGgtatgtgttgcctggtcctg	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37678873	T	T	37678873	3	4	9	1	0	0	0	0	1	0	0	0	3985	1116	39	1	496	1	CSNK1A1L	13	37678873	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71278	37678873	77491005	14057	22208											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37678991	37678991	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatctggtttaatgtctcGgtgtagaaaattctttgtat	9	4	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37678991	T	T	37678991	2	4	9	1	0	0	0	0	0	0	0	1	3985	1124	39	1		1	CSNK1A1L	13	37678991	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	118	37678991	77490887	14058	22209											
POSTN	10631	broad.mit.edu	37	chr13	38153365	38153365	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattcattctagacaacttaCttctttcagaaagattttgc	4	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38153365	G	G	38153365	5	3	9	1	0	0	0	0	0	0	1	0	12354	579	20	4	762	4	POSTN	13	38153365	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	474374	38153365	77016513	14059	22210											
POSTN	10631	broad.mit.edu	37	chr13	38154780	38154780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaatatgtgaatcgcacCgtttctcccttgcttactcc	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38154780	A	A	38154780	3	1	9	1	0	0	0	0	1	0	0	0	12354	652	23	1	1115	1	POSTN	13	38154780	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1415	38154780	77015098	14060	22211											
POSTN	10631	broad.mit.edu	37	chr13	38160372	38160372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagagtgtgaagtgacCgtctcttccaagggcctcca	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38160372	A	A	38160372	3	1	9	1	0	0	0	0	1	0	0	0	12354	652	23	1	1779	1	POSTN	13	38160372	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5592	38160372	77009506	14061	22212											
TRPC4	7223	broad.mit.edu	37	chr13	38213192	38213192	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaccttaaagttctcttcGgtcaggccttcttcagtttt	7	10	4	0	rs116527482	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38213192	T	T	38213192	2	4	9	1	0	0	0	0	0	0	0	1	16705	1103	39	1		1	TRPC4	13	38213192	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	52820	38213192	76956686	14062	22213											
TRPC4	7223	broad.mit.edu	37	chr13	38213286	38213286	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgaggcattttagaacaaGagtattgatactcaatgagt	9	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38213286	T	T	38213286	1	4	9	0	1	0	0	0	0	0	0	0	16705	957	33	3		3	TRPC4	13	38213286	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	94	38213286	76956592	14063	22214											
TRPC4	7223	broad.mit.edu	37	chr13	38320005	38320005	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacccaaaactaattttgtGagtagcagtttgcttcactg	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38320005	T	T	38320005	1	4	9	0	1	0	0	0	0	0	0	0	16705	1305	45	3		3	TRPC4	13	38320005	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	106719	38320005	76849873	14064	22215											
TRPC4	7223	broad.mit.edu	37	chr13	38320254	38320254	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgacagctcttcatactcCgacttgaattcattttccac	5	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38320254	A	A	38320254	2	1	9	1	0	0	0	0	0	0	0	1	16705	639	23	1		1	TRPC4	13	38320254	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	249	38320254	76849624	14065	22216											
UFM1	51569	broad.mit.edu	37	chr13	38924104	38924104	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taattcctggtccagctgccCgaccctgactctctcccgct	7	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38924104	G	G	38924104	1	3	9	0	1	0	0	0	0	0	0	0	17062	667	23	4		4	UFM1	13	38924104	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	603850	38924104	76245774	14066	22217											
UFM1	51569	broad.mit.edu	37	chr13	38924121	38924121	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgaccctgactctctccCgctcttttcctcaggtcgaa	7	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38924121	A	A	38924121	1	1	9	0	1	0	0	0	0	0	0	0	17062	667	23	1		1	UFM1	13	38924121	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	38924121	76245757	14067	22218											
FREM2	341640	broad.mit.edu	37	chr13	39266383	39266383	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatgtttttcctgatacGgtgtttgaaacaaggagacc	9	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39266383	T	T	39266383	2	4	9	1	0	0	0	0	0	0	0	1	6105	1103	39	1		1	FREM2	13	39266383	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	342262	39266383	75903495	14068	22219											
FREM2	341640	broad.mit.edu	37	chr13	39425149	39425149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggaggtagaggagctcCgcctggtactcggcactcca	14	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39425149	A	A	39425149	3	1	9	1	0	0	0	0	1	0	0	0	6105	652	23	1	6684	1	FREM2	13	39425149	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158766	39425149	75744729	14069	22220											
FREM2	341640	broad.mit.edu	37	chr13	39433360	39433360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaactcgatggcagagaacGggagaagaatgcgttccacc	12	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39433360	T	T	39433360	1	4	9	0	1	0	0	0	0	0	0	0	6105	1131	39	1		1	FREM2	13	39433360	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8211	39433360	75736518	14070	22221											
STOML3	161003	broad.mit.edu	37	chr13	39542597	39542597	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggatctctgcaactgcacGggaatccgaacatctttgat	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39542597	T	T	39542597	2	4	9	1	0	0	0	0	0	0	0	1	15433	1103	39	1		1	STOML3	13	39542597	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	109237	39542597	75627281	14071	22222											
NHLRC3	387921	broad.mit.edu	37	chr13	39613237	39613237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttgttcttacctagacGgtaaactaaatctgaattgt	6	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39613237	T	T	39613237	1	4	9	0	1	0	0	0	0	0	0	0	10502	1131	39	1		1	NHLRC3	13	39613237	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	70640	39613237	75556641	14072	22223											
LHFP	10186	broad.mit.edu	37	chr13	40175179	40175179	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caccatcaccatcatctgccGactctcatcatgcacaggat	5	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40175179	T	T	40175179	2	4	9	1	0	0	0	0	0	0	0	1	8835	1057	37	3		3	LHFP	13	40175179	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	561942	40175179	74994699	14073	22224											
FOXO1	2308	broad.mit.edu	37	chr13	41193811	41193811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcaatggtggtagttcCaacattctaaggactaggct	9	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41193811	A	A	41193811	1	1	9	0	1	0	0	0	0	0	0	0	6083	609	21	2		2	FOXO1	13	41193811	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1018632	41193811	73976067	14074	22225											
ELF1	1997	broad.mit.edu	37	chr13	41515194	41515194	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggatatggagactgcgtGggctgcactgtcctcaaaac	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41515194	T	T	41515194	2	4	9	1	0	0	0	0	0	0	0	1	5095	1335	47	2		2	ELF1	13	41515194	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	321383	41515194	73654684	14075	22226											
ELF1	1997	broad.mit.edu	37	chr13	41523979	41523979	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctggtgatgaggctccCggtgagtctgcatatttttc	12	8	2	3	rs147401106		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41523979	A	A	41523979	2	1	9	1	0	0	0	0	0	0	0	1	5095	639	23	1		1	ELF1	13	41523979	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8785	41523979	73645899	14076	22227											
ELF1	1997	broad.mit.edu	37	chr13	41525552	41525552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttcaattgtttcatcccCgtcatgacaagaagcttcaa	6	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41525552	A	A	41525552	3	1	9	1	0	0	0	0	1	0	0	0	5095	652	23	1	1609	1	ELF1	13	41525552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1573	41525552	73644326	14077	22228											
KBTBD7	84078	broad.mit.edu	37	chr13	41766463	41766463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgaatccatctaagtccCattcagtactagactcactc	4	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41766463	A	A	41766463	3	1	9	1	0	0	0	0	1	0	0	0	8068	595	21	2	127	2	KBTBD7	13	41766463	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	240911	41766463	73403415	14078	22229											
KBTBD7	84078	broad.mit.edu	37	chr13	41766650	41766650	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcatacactgtcactcGgttctttttccattgtgggg	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41766650	T	T	41766650	2	4	9	1	0	0	0	0	0	0	0	1	8068	1124	39	1		1	KBTBD7	13	41766650	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	187	41766650	73403228	14079	22230											
KBTBD7	84078	broad.mit.edu	37	chr13	41766725	41766725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgacaatctggtagttgtGggtctctgaatccaaaggaa	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41766725	T	T	41766725	3	4	9	1	0	0	0	0	1	0	0	0	8068	1348	47	2	389	2	KBTBD7	13	41766725	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75	41766725	73403153	14080	22231											
MTRF1	9617	broad.mit.edu	37	chr13	41800705	41800705	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcattctactactagccCtgaaaaataacagggatcag	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41800705	A	A	41800705	5	1	9	1	0	0	0	0	0	0	1	0	10053	695	24	2	361	2	MTRF1	13	41800705	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	33980	41800705	73369173	14081	22232											
MTRF1	9617	broad.mit.edu	37	chr13	41834737	41834737	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgttcaaggaccttcGgttttcctcattcacaggga	8	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41834737	T	T	41834737	2	4	9	1	0	0	0	0	0	0	0	1	10053	1124	39	1		1	MTRF1	13	41834737	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34032	41834737	73335141	14082	22233											
KIAA0564	23078	broad.mit.edu	37	chr13	42245212	42245212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaacaccgcttttgtccCactcagccagcagtgcatct	6	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42245212	A	A	42245212	3	1	9	1	0	0	0	0	1	0	0	0	8255	595	21	2	1272	2	KIAA0564	13	42245212	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	410475	42245212	72924666	14083	22234											
KIAA0564	23078	broad.mit.edu	37	chr13	42245299	42245299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatctggaaaaaggaatcCaagtgaagctaagagaccac	10	8	1	3	rs145461423	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42245299	A	A	42245299	1	1	9	0	1	0	0	0	0	0	0	0	8255	609	21	2		2	KIAA0564	13	42245299	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	42245299	72924579	14084	22235											
KIAA0564	23078	broad.mit.edu	37	chr13	42265356	42265356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacacagaaattgttaaaGgacagacacaggaaagacag	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42265356	T	T	42265356	1	4	9	0	1	0	0	0	0	0	0	0	8255	1015	35	2		2	KIAA0564	13	42265356	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20057	42265356	72904522	14085	22236											
KIAA0564	23078	broad.mit.edu	37	chr13	42439950	42439950	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactgtttttccacaaccCtacaaatggaaaaaattatt	3	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42439950	A	A	42439950	5	1	9	1	0	0	0	0	0	0	1	0	8255	695	24	2	4510	2	KIAA0564	13	42439950	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	174594	42439950	72729928	14086	22237											
KIAA0564	23078	broad.mit.edu	37	chr13	42486240	42486240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagaaaaacatcttgcccCaaaagatccttctgcattat	4	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42486240	A	A	42486240	3	1	9	1	0	0	0	0	1	0	0	0	8255	593	21	2	5587	2	KIAA0564	13	42486240	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46290	42486240	72683638	14087	22238											
DGKH	160851	broad.mit.edu	37	chr13	42643460	42643460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggctgtcccaagaagatGggtacaaagtttctaattga	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42643460	T	T	42643460	1	4	9	0	1	0	0	0	0	0	0	0	4510	1363	47	2		2	DGKH	13	42643460	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	157220	42643460	72526418	14088	22239											
DGKH	160851	broad.mit.edu	37	chr13	42773992	42773992	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatggagtccttggaaccCgggagttattacagagatcg	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42773992	A	A	42773992	2	1	9	1	0	0	0	0	0	0	0	1	4510	643	23	1		1	DGKH	13	42773992	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	130532	42773992	72395886	14089	22240											
DGKH	160851	broad.mit.edu	37	chr13	42793267	42793267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatactaccttaataaGgagtgaggctgttcactgtc	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42793267	T	T	42793267	1	4	9	0	1	0	0	0	0	0	0	0	4510	1015	35	2		2	DGKH	13	42793267	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19275	42793267	72376611	14090	22241											
AKAP11	11215	broad.mit.edu	37	chr13	42874016	42874016	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgtttaacaaagatccCgtcatagggaagtcatcgca	9	10	2	1	rs139822178		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42874016	A	A	42874016	2	1	9	1	0	0	0	0	0	0	0	1	447	639	23	1		1	AKAP11	13	42874016	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80749	42874016	72295862	14091	22242											
AKAP11	11215	broad.mit.edu	37	chr13	42875231	42875231	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacttctataccggtgccCttggcaggaagtgcccttct	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42875231	A	A	42875231	2	1	9	1	0	0	0	0	0	0	0	1	447	668	24	2		2	AKAP11	13	42875231	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1215	42875231	72294647	14092	22243											
AKAP11	11215	broad.mit.edu	37	chr13	42877758	42877758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatccaaaatttagcagcCgctatcagaaatctaggatt	6	9	2	1	rs61753630	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42877758	A	A	42877758	3	1	9	1	0	0	0	0	1	0	0	0	447	652	23	1	4898	1	AKAP11	13	42877758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2527	42877758	72292120	14093	22244											
AKAP11	11215	broad.mit.edu	37	chr13	42891668	42891668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatttaaatattaggtttGgggcaagatggaaagacact	10	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42891668	T	T	42891668	3	4	9	1	0	0	0	0	1	0	0	0	447	1339	47	2	5447	2	AKAP11	13	42891668	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13910	42891668	72278210	14094	22245											
EPSTI1	94240	broad.mit.edu	37	chr13	43491750	43491750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagagaatctctgtaagccCagcttctggcctgtaaaggt	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43491750	A	A	43491750	3	1	9	1	0	0	0	0	1	0	0	0	5240	595	21	2	551	2	EPSTI1	13	43491750	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	600082	43491750	71678128	14095	22246											
EPSTI1	94240	broad.mit.edu	37	chr13	43500488	43500488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacccatgttgaggattgtGggccacaaacagcactttga	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43500488	T	T	43500488	3	4	9	1	0	0	0	0	1	0	0	0	5240	1348	47	2	619	2	EPSTI1	13	43500488	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8738	43500488	71669390	14096	22247											
EPSTI1	94240	broad.mit.edu	37	chr13	43500570	43500570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactcagcggttttgctacCagaaacacaaacaggtgtta	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43500570	A	A	43500570	1	1	9	0	1	0	0	0	0	0	0	0	5240	609	21	2		2	EPSTI1	13	43500570	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	43500570	71669308	14097	22248											
EPSTI1	94240	broad.mit.edu	37	chr13	43566008	43566008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattcagtcaaaatccctGttgttgggcccctgtggttt	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43566008	T	T	43566008	1	4	9	0	1	0	0	0	0	0	0	0	5240	1392	48	3		3	EPSTI1	13	43566008	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65438	43566008	71603870	14098	22249											
ENOX1	55068	broad.mit.edu	37	chr13	43788192	43788192	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcgtggctcccacaccCgtgaattcctgtttgaacat	8	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43788192	A	A	43788192	2	1	9	1	0	0	0	0	0	0	0	1	5168	639	23	1		1	ENOX1	13	43788192	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	222184	43788192	71381686	14099	22250											
ENOX1	55068	broad.mit.edu	37	chr13	43839530	43839530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataccaggtttgtggtacCtacatttgaatcctcatggc	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43839530	A	A	43839530	1	1	9	0	1	0	0	0	0	0	0	0	5168	696	24	2		2	ENOX1	13	43839530	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	51338	43839530	71330348	14100	22251											
ENOX1	55068	broad.mit.edu	37	chr13	43918767	43918767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcattcattagccggcGgacgtggctgttggccgact	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43918767	T	T	43918767	3	4	9	1	0	0	0	0	1	0	0	0	5168	1116	39	1	1024	1	ENOX1	13	43918767	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	79237	43918767	71251111	14101	22252											
CCDC122	160857	broad.mit.edu	37	chr13	44434020	44434020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcctcaaaatcttcttGggctgtttctatgtcaaatt	7	8	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44434020	T	T	44434020	3	4	9	1	0	0	0	0	1	0	0	0	2784	1357	47	2	490	2	CCDC122	13	44434020	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	515253	44434020	70735858	14102	22253											
SERP2	387923	broad.mit.edu	37	chr13	44953878	44953878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcactgaacttatatccCatgttctccactggcctttg	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44953878	A	A	44953878	1	1	9	0	1	0	0	0	0	0	0	0	14198	609	21	2		2	SERP2	13	44953878	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	519858	44953878	70216000	14103	22254											
TSC22D1	8848	broad.mit.edu	37	chr13	45147886	45147886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcactagtttgaactccCtgatgaataatcccagtttg	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45147886	A	A	45147886	3	1	9	1	0	0	0	0	1	0	0	0	16732	680	24	2	1037	2	TSC22D1	13	45147886	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	194008	45147886	70021992	14104	22255											
TSC22D1	8848	broad.mit.edu	37	chr13	45148644	45148644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgtggaccagtgctacCaaaatccatctgttggaggg	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45148644	A	A	45148644	3	1	9	1	0	0	0	0	1	0	0	0	16732	594	21	2	1795	2	TSC22D1	13	45148644	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	758	45148644	70021234	14105	22256											
TSC22D1	8848	broad.mit.edu	37	chr13	45149845	45149845	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttagagctgatactagcGgagatctgagcaggagtaac	13	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45149845	T	T	45149845	2	4	9	1	0	0	0	0	0	0	0	1	16732	1103	39	1		1	TSC22D1	13	45149845	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1201	45149845	70020033	14106	22257											
NUFIP1	26747	broad.mit.edu	37	chr13	45515405	45515405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttttttgatgatgtacCgaacacactgcaaaatcaca	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45515405	A	A	45515405	3	1	9	1	0	0	0	0	1	0	0	0	10843	652	23	1	67	1	NUFIP1	13	45515405	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	365560	45515405	69654473	14107	22258											
NUFIP1	26747	broad.mit.edu	37	chr13	45563114	45563114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggggagaggaaagaacGggggaaaaaggtaaaggggt	20	1	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45563114	T	T	45563114	1	4	9	0	1	0	0	0	0	0	0	0	10843	1131	39	1		1	NUFIP1	13	45563114	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47709	45563114	69606764	14108	22259											
SLC25A30	253512	broad.mit.edu	37	chr13	45970135	45970135	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccaatttcttcaactgctCgtatgtcacaaagaactgtg	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45970135	A	A	45970135	4	1	9	1	0	0	0	0	0	1	0	0	14608	893	31	3	29	3	SLC25A30	13	45970135	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	407021	45970135	69199743	14109	22260											
SLC25A30	253512	broad.mit.edu	37	chr13	45983064	45983064	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgaaggcctactcacccCgagtagagtgctttcagccc	10	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45983064	A	A	45983064	2	1	9	1	0	0	0	0	0	0	0	1	14608	639	23	1		1	SLC25A30	13	45983064	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12929	45983064	69186814	14110	22261											
COG3	83548	broad.mit.edu	37	chr13	46060732	46060732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtctattgacataactaGgacattgctatgaaatttgt	7	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46060732	T	T	46060732	1	4	9	0	1	0	0	0	0	0	0	0	3691	1015	35	2		2	COG3	13	46060732	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	77668	46060732	69109146	14111	22262											
COG3	83548	broad.mit.edu	37	chr13	46065594	46065594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgttaccttgatcagcGggagctccttttgggcccta	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46065594	T	T	46065594	3	4	9	1	0	0	0	0	1	0	0	0	3691	1116	39	1	1054	1	COG3	13	46065594	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4862	46065594	69104284	14112	22263											
COG3	83548	broad.mit.edu	37	chr13	46104131	46104131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttaccattttccttttgCtgtagacatttagaaatgtt	5	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46104131	A	A	46104131	1	1	9	0	1	0	0	0	0	0	0	0	3691	812	28	3		3	COG3	13	46104131	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38537	46104131	69065747	14113	22264											
SIAH3	283514	broad.mit.edu	37	chr13	46425671	46425671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgacacagacaagttgccCggcagcggagaaaacccgtt	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46425671	A	A	46425671	3	1	9	1	0	0	0	0	1	0	0	0	14414	652	23	1	723	1	SIAH3	13	46425671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	321540	46425671	68744207	14114	22265											
ZC3H13	23091	broad.mit.edu	37	chr13	46541741	46541741	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaaggctagagagtctcGggaagtgctttctagatccc	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46541741	T	T	46541741	2	4	9	1	0	0	0	0	0	0	0	1	17691	1124	39	1		1	ZC3H13	13	46541741	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	116070	46541741	68628137	14115	22266											
ZC3H13	23091	broad.mit.edu	37	chr13	46543102	46543102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggttactccgattgctccCgaggctgctgctcctctttt	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46543102	A	A	46543102	3	1	9	1	0	0	0	0	1	0	0	0	17691	652	23	1	1133	1	ZC3H13	13	46543102	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1361	46543102	68626776	14116	22267											
ZC3H13	23091	broad.mit.edu	37	chr13	46543188	46543188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgtctctactttttctactCgtgttctgtggcattttctg	8	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46543188	A	A	46543188	3	1	9	1	0	0	0	0	1	0	0	0	17691	884	31	3	1219	3	ZC3H13	13	46543188	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	46543188	68626690	14117	22268											
ZC3H13	23091	broad.mit.edu	37	chr13	46544021	46544021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctctttccatctaccCtgtctgtcttctgtgaggtg	7	14	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46544021	A	A	46544021	3	1	9	1	0	0	0	0	1	0	0	0	17691	680	24	2	2052	2	ZC3H13	13	46544021	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	833	46544021	68625857	14118	22269											
ZC3H13	23091	broad.mit.edu	37	chr13	46544046	46544046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttctgtgaggtgcgagGgactaagagaacgagattct	14	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46544046	T	T	46544046	3	4	9	1	0	0	0	0	1	0	0	0	17691	1232	43	2	2077	2	ZC3H13	13	46544046	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	46544046	68625832	14119	22270											
ZC3H13	23091	broad.mit.edu	37	chr13	46544556	46544556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttcacgccggcgcttcGgggactgtctagggctggga	16	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46544556	T	T	46544556	3	4	9	1	0	0	0	0	1	0	0	0	17691	1116	39	1	2201	1	ZC3H13	13	46544556	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	510	46544556	68625322	14120	22271											
ZC3H13	23091	broad.mit.edu	37	chr13	46549517	46549517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttgtctttgtcttccCaatccctttggcgttctcgt	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46549517	A	A	46549517	3	1	9	1	0	0	0	0	1	0	0	0	17691	595	21	2	2349	2	ZC3H13	13	46549517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4961	46549517	68620361	14121	22272											
ZC3H13	23091	broad.mit.edu	37	chr13	46619579	46619579	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaatacactgggtcttcGggatgtgctatcagatatag	10	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46619579	T	T	46619579	2	4	9	1	0	0	0	0	0	0	0	1	17691	1124	39	1		1	ZC3H13	13	46619579	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70062	46619579	68550299	14122	22273											
CPB2	1361	broad.mit.edu	37	chr13	46627854	46627854	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagaatccgtatgtgccCgtatctcgaagttcaattgt	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46627854	A	A	46627854	2	1	9	1	0	0	0	0	0	0	0	1	3829	639	23	1		1	CPB2	13	46627854	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8275	46627854	68542024	14123	22274											
CPB2	1361	broad.mit.edu	37	chr13	46652843	46652843	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgcaaatattttcagaactCaaaggaaacaaactcaagtt	5	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46652843	T	T	46652843	1	4	9	0	1	0	0	0	0	0	0	0	3829	841	29	4		4	CPB2	13	46652843	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24989	46652843	68517035	14124	22275											
LCP1	3936	broad.mit.edu	37	chr13	46701839	46701839	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcttgctccaatttttcGggccatagagatggcatatc	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46701839	T	T	46701839	2	4	9	1	0	0	0	0	0	0	0	1	8763	1124	39	1		1	LCP1	13	46701839	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48996	46701839	68468039	14125	22276											
LCP1	3936	broad.mit.edu	37	chr13	46705069	46705069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacttgtactaatcttcGggtcctatgcagagacacag	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46705069	T	T	46705069	3	4	9	1	0	0	0	0	1	0	0	0	8763	1116	39	1	260	1	LCP1	13	46705069	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3230	46705069	68464809	14126	22277											
LCP1	3936	broad.mit.edu	37	chr13	46705124	46705124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgtcccaaagttactccCattcagctcaaaggaagtgg	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46705124	A	A	46705124	1	1	9	0	1	0	0	0	0	0	0	0	8763	609	21	2		2	LCP1	13	46705124	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	46705124	68464754	14127	22278											
LCP1	3936	broad.mit.edu	37	chr13	46722542	46722542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttcttcatctccttttGgagccacctgctcaagcagg	7	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46722542	T	T	46722542	3	4	9	1	0	0	0	0	1	0	0	0	8763	1348	47	2	992	2	LCP1	13	46722542	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17418	46722542	68447336	14128	22279											
LCP1	3936	broad.mit.edu	37	chr13	46730621	46730621	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagagatcattcgtgtttGggttcattgggatgacatgc	12	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46730621	T	T	46730621	3	4	9	1	0	0	0	0	1	0	0	0	8763	1348	47	2	1488	2	LCP1	13	46730621	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8079	46730621	68439257	14129	22280											
LRCH1	23143	broad.mit.edu	37	chr13	47285956	47285956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctaacattacagagtaacGggagccagtattctccaaat	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47285956	T	T	47285956	3	4	9	1	0	0	0	0	1	0	0	0	9019	1116	39	1	1612	1	LRCH1	13	47285956	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	555335	47285956	67883922	14130	22281											
LRCH1	23143	broad.mit.edu	37	chr13	47315857	47315859	+	Missense_Mutation	TNP	CGG	ATT	ATT													gttgacactctgctggcactCggggagaaagccccaccacc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATT	47315859	ATT	ATT	47315857	3	1	9	1	0	0	0	0	1	0	0	0	9019	871	31	3	2244	3	LRCH1	13	47315857	Missense_Mutation	TNP	CGG	TCGA-05-4396-01A-21D-1855-08	29901	47315857	67854021	14131	22282											
ESD	2098	broad.mit.edu	37	chr13	47345542	47345542	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagagattctcttatttGgagttttttcatgcattcag	8	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47345542	T	T	47345542	1	4	9	0	1	0	0	0	0	0	0	0	5292	1363	47	2		2	ESD	13	47345542	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	29685	47345542	67824336	14132	22283											
RCBTB2	1102	broad.mit.edu	37	chr13	49077117	49077117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagttgggtcctcctccCgccaggtttaactgatgtgg	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49077117	A	A	49077117	1	1	9	0	1	0	0	0	0	0	0	0	13280	667	23	1		1	RCBTB2	13	49077117	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1731575	49077117	66092761	14133	22284											
RCBTB2	1102	broad.mit.edu	37	chr13	49085946	49085946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagctgccactctgcaaGgggttggctggttgccactg	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49085946	T	T	49085946	3	4	9	1	0	0	0	0	1	0	0	0	13280	1000	35	2	940	2	RCBTB2	13	49085946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8829	49085946	66083932	14134	22285											
RCBTB2	1102	broad.mit.edu	37	chr13	49096014	49096014	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaacacacatgctccaaGggcatgatttttttctaacc	6	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49096014	T	T	49096014	1	4	9	0	1	0	0	0	0	0	0	0	13280	1015	35	2		2	RCBTB2	13	49096014	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10068	49096014	66073864	14135	22286											
FNDC3A	22862	broad.mit.edu	37	chr13	49688863	49688863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcctcctggatatgcccCacaggtatgtttttatgcta	9	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49688863	A	A	49688863	3	1	9	1	0	0	0	0	1	0	0	0	6027	594	21	2	269	2	FNDC3A	13	49688863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	592849	49688863	65481015	14136	22287											
FNDC3A	22862	broad.mit.edu	37	chr13	49705437	49705437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtcatatgtactcaccCgtgactggagctggagacat	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49705437	A	A	49705437	2	1	9	1	0	0	0	0	0	0	0	1	6027	639	23	1		1	FNDC3A	13	49705437	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16574	49705437	65464441	14137	22288											
CAB39L	81617	broad.mit.edu	37	chr13	49906129	49906129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgttgggacttttatccCgaaggaggttcatcatgagt	13	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49906129	A	A	49906129	3	1	9	1	0	0	0	0	1	0	0	0	2552	652	23	1	233	1	CAB39L	13	49906129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	200692	49906129	65263749	14138	22289											
RCBTB1	55213	broad.mit.edu	37	chr13	50134213	50134213	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggccccaggcataaacCactccatctgtgcacacaaa	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50134213	A	A	50134213	2	1	9	1	0	0	0	0	0	0	0	1	13279	581	21	2		2	RCBTB1	13	50134213	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	228084	50134213	65035665	14139	22290											
KPNA3	3839	broad.mit.edu	37	chr13	50283782	50283782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacaattgagaacaacctGggtctgctcgtcggtgccag	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50283782	T	T	50283782	3	4	9	1	0	0	0	0	1	0	0	0	8502	1357	47	2	631	2	KPNA3	13	50283782	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149569	50283782	64886096	14140	22291											
TRIM13	10206	broad.mit.edu	37	chr13	50586138	50586138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtctgtttgatgatccacGggttttgccttgctcccaca	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50586138	T	T	50586138	3	4	9	1	0	0	0	0	1	0	0	0	16612	1116	39	1	77	1	TRIM13	13	50586138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	302356	50586138	64583740	14141	22292											
TRIM13	10206	broad.mit.edu	37	chr13	50586370	50586370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtatgcaaaggacacttGgggcagcctctcaacatttt	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50586370	T	T	50586370	3	4	9	1	0	0	0	0	1	0	0	0	16612	1339	47	2	309	2	TRIM13	13	50586370	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	232	50586370	64583508	14142	22293											
SERPINE3	647174	broad.mit.edu	37	chr13	51918315	51918315	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgttccatctcaatgcaaTgtgtgctggaggttgtgcta	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51918315	A	A	51918315	1	1	9	0	1	0	0	0	0	0	0	0	14226	1479	51	5		5	SERPINE3	13	51918315	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	1331945	51918315	63251563	14143	22294											
DHRS12	79758	broad.mit.edu	37	chr13	52373769	52373769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacctccaagtcatgagGgacaaagtctttacatgcag	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52373769	T	T	52373769	3	4	9	1	0	0	0	0	1	0	0	0	4528	1219	43	2	990	2	DHRS12	13	52373769	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	455454	52373769	62796109	14144	22295											
ATP7B	540	broad.mit.edu	37	chr13	52513226	52513226	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcttccggttgtccccCgtgatcagaaccacgtccac	9	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52513226	A	A	52513226	2	1	9	1	0	0	0	0	0	0	0	1	1195	639	23	1		1	ATP7B	13	52513226	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	139457	52513226	62656652	14145	22296											
ATP7B	540	broad.mit.edu	37	chr13	52544756	52544756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactttgccaagatgtccGgggcatggtttgcagggagc	17	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52544756	T	T	52544756	3	4	9	1	0	0	0	0	1	0	0	0	1195	1116	39	1	3058	1	ATP7B	13	52544756	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31530	52544756	62625122	14146	22297											
ATP7B	540	broad.mit.edu	37	chr13	52548699	52548699	+	Silent	SNP	C	G	G													cgctcaatatcaattggtccCaggcttaagggagccacttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52548699	G	G	52548699	2	3	9	1	0	0	0	0	0	0	0	1	1195	581	21	4		4	ATP7B	13	52548699	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3943	52548699	62621179	14147	22298	148	2									
ATP7B	540	broad.mit.edu	37	chr13	52548708	52548708	+	Silent	SNP	G	T	T													tcaattggtcccaggcttaaGggagccactttgctcttgat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52548708	T	T	52548708	2	4	9	1	0	0	0	0	0	0	0	1	1195	987	35	2		2	ATP7B	13	52548708	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	52548708	62621170	14148	22299	148	2									
ATP7B	540	broad.mit.edu	37	chr13	52585479	52585479	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgctcaggcatcgtccCgcacggacaccgaattcttc	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52585479	A	A	52585479	1	1	9	0	1	0	0	0	0	0	0	0	1195	667	23	1		1	ATP7B	13	52585479	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	36771	52585479	62584399	14149	22300											
UTP14C	9724	broad.mit.edu	37	chr13	52602504	52602504	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatccttgcacacaattcGgggggcccaaagcttgacat	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52602504	T	T	52602504	1	4	9	0	1	0	0	0	0	0	0	0	17223	1103	39	1		1	UTP14C	13	52602504	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	17025	52602504	62567374	14150	22301											
UTP14C	9724	broad.mit.edu	37	chr13	52603094	52603094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggaagcaatcatttccCttgatggaaagaataggcgg	11	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52603094	A	A	52603094	3	1	9	1	0	0	0	0	1	0	0	0	17223	681	24	2	156	2	UTP14C	13	52603094	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	590	52603094	62566784	14151	22302											
UTP14C	9724	broad.mit.edu	37	chr13	52603113	52603113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgatggaaagaataggcGgaaattggctgagaggtctg	15	5	1	3	rs145476266	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52603113	T	T	52603113	3	4	9	1	0	0	0	0	1	0	0	0	17223	1116	39	1	175	1	UTP14C	13	52603113	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	52603113	62566765	14152	22303											
UTP14C	9724	broad.mit.edu	37	chr13	52603607	52603607	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagaggcaaagatgcacCgagcagagcttcagagggct	15	8	1	4	rs140869647		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52603607	A	A	52603607	2	1	9	1	0	0	0	0	0	0	0	1	17223	644	23	1		1	UTP14C	13	52603607	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	494	52603607	62566271	14153	22304											
UTP14C	9724	broad.mit.edu	37	chr13	52604415	52604415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagagaggaacctgcccCagaagaagcggaacccctat	11	13	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52604415	A	A	52604415	3	1	9	1	0	0	0	0	1	0	0	0	17223	594	21	2	1477	2	UTP14C	13	52604415	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	808	52604415	62565463	14154	22305											
NEK5	341676	broad.mit.edu	37	chr13	52676385	52676385	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattggggcaaaatgtgctTgacaaatcttcagaaccagc	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52676385	A	A	52676385	3	1	9	1	0	0	0	0	1	0	0	0	10422	1812	63	5	1525	5	NEK5	13	52676385	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	71970	52676385	62493493	14155	22306											
THSD1	55901	broad.mit.edu	37	chr13	52952320	52952320	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccccggcactgaccgcGggctgctccggaaatgggga	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52952320	T	T	52952320	2	4	9	1	0	0	0	0	0	0	0	1	16000	1103	39	1		1	THSD1	13	52952320	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	275935	52952320	62217558	14156	22307											
VPS36	51028	broad.mit.edu	37	chr13	53008930	53008931	+	Missense_Mutation	DNP	GG	TT	TT													aaatagttttaaaaatacctGgggtcctctatttgtttgta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	53008931	TT	TT	53008930	3	4	9	1	0	0	0	0	1	0	0	0	17331	1357	47	2	761	2	VPS36	13	53008930	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	56610	53008930	62160948	14157	22308											
CKAP2	26586	broad.mit.edu	37	chr13	53035370	53035370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactaactgaagatgatcccCaaagtcaacatatgacatta	5	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53035370	A	A	53035370	3	1	9	1	0	0	0	0	1	0	0	0	3473	595	21	2	426	2	CKAP2	13	53035370	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26440	53035370	62134508	14158	22309											
CKAP2	26586	broad.mit.edu	37	chr13	53035978	53035978	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatggaaaagtcagagccCgttgaccagcgaagacatac	11	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53035978	A	A	53035978	2	1	9	1	0	0	0	0	0	0	0	1	3473	639	23	1		1	CKAP2	13	53035978	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	608	53035978	62133900	14159	22310											
SUGT1	10910	broad.mit.edu	37	chr13	53227294	53227294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggggagctgggccacttcGggtccccgctgacccgcctt	14	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53227294	T	T	53227294	1	4	9	0	1	0	0	0	0	0	0	0	15487	1131	39	1		1	SUGT1	13	53227294	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	191316	53227294	61942584	14160	22311											
PCDH8	5100	broad.mit.edu	37	chr13	53418924	53418924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccctgcgcagaggatccCgaggcagtgacgtgctctta	13	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53418924	A	A	53418924	3	1	9	1	0	0	0	0	1	0	0	0	11611	652	23	1	232	1	PCDH8	13	53418924	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	191630	53418924	61750954	14161	22312											
OLFM4	10562	broad.mit.edu	37	chr13	53603067	53603067	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacctccaattcccagcccCggcttcagctctttcccagg	8	18	2	0	rs140749392		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53603067	A	A	53603067	2	1	9	1	0	0	0	0	0	0	0	1	10950	639	23	1		1	OLFM4	13	53603067	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	184143	53603067	61566811	14162	22313											
OLFM4	10562	broad.mit.edu	37	chr13	53608563	53608563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagacaccacctttccCgtggacagagtggaacgctt	10	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53608563	A	A	53608563	2	1	9	1	0	0	0	0	0	0	0	1	10950	639	23	1		1	OLFM4	13	53608563	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5496	53608563	61561315	14163	22314											
PCDH17	27253	broad.mit.edu	37	chr13	58208607	58208607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagatcgacccgtccagcGgcgagatccgcacgctgcac	12	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58208607	T	T	58208607	3	4	9	1	0	0	0	0	1	0	0	0	11606	1116	39	1	1929	1	PCDH17	13	58208607	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4600044	58208607	56961271	14164	22315											
PCDH17	27253	broad.mit.edu	37	chr13	58208651	58208651	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggaggacgtgacgccCgtggtggagctggtggtgaa	19	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58208651	A	A	58208651	2	1	9	1	0	0	0	0	0	0	0	1	11606	639	23	1		1	PCDH17	13	58208651	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	58208651	56961227	14165	22316											
PCDH17	27253	broad.mit.edu	37	chr13	58208702	58208702	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggcaagcctaccctgtcCgcagtggccaagctcatcat	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58208702	A	A	58208702	2	1	9	1	0	0	0	0	0	0	0	1	11606	639	23	1		1	PCDH17	13	58208702	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	58208702	56961176	14166	22317											
DIAPH3	81624	broad.mit.edu	37	chr13	60407250	60407250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaccataccatgaatgtGgttctgaagttattcaggtc	8	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60407250	T	T	60407250	2	4	9	1	0	0	0	0	0	0	0	1	4560	1335	47	2		2	DIAPH3	13	60407250	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2198548	60407250	54762628	14167	22318											
DIAPH3	81624	broad.mit.edu	37	chr13	60557984	60557984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctatgcaatacaatctGggatacacactcatcaatta	4	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60557984	T	T	60557984	3	4	9	1	0	0	0	0	1	0	0	0	4560	1357	47	2	2266	2	DIAPH3	13	60557984	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150734	60557984	54611894	14168	22319											
PCDH9	5101	broad.mit.edu	37	chr13	67801120	67801120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagttgttaagtataaccCacgtcggttgttttcagaaa	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67801120	A	A	67801120	3	1	9	1	0	0	0	0	1	0	0	0	11612	594	21	2	2276	2	PCDH9	13	67801120	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7243136	67801120	47368758	14169	22320											
PCDH9	5101	broad.mit.edu	37	chr13	67801463	67801463	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctcagataaatacacGgtgccattgatgggacttat	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67801463	T	T	67801463	2	4	9	1	0	0	0	0	0	0	0	1	11612	1103	39	1		1	PCDH9	13	67801463	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	343	67801463	47368415	14170	22321											
KLHL1	57626	broad.mit.edu	37	chr13	70314593	70314593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggctacaaatgtccattGttgactctgtggatcccacc	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70314593	T	T	70314593	3	4	9	1	0	0	0	0	1	0	0	0	8436	1386	48	3	527	3	KLHL1	13	70314593	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2513130	70314593	44855285	14171	22322											
C13orf37	440145	broad.mit.edu	37	chr13	73293169	73293169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattccttgttcacaaagcCgtacacaaatagacagagtt	6	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73293169	A	A	73293169	3	1	9	1	0	0	0	0	1	0	0	0	1744	652	23	1	110	1	C13orf37	13	73293169	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2978576	73293169	41876709	14172	22323											
C13orf34	79866	broad.mit.edu	37	chr13	73319246	73319246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttaccttcggcttctccCggaagtcctcacagtggtgt	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73319246	A	A	73319246	2	1	9	1	0	0	0	0	0	0	0	1	1741	639	23	1		1	C13orf34	13	73319246	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26077	73319246	41850632	14173	22324											
C13orf34	79866	broad.mit.edu	37	chr13	73320708	73320708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaatgggataactaatcCgtgtatcagaagtccttata	7	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73320708	A	A	73320708	3	1	9	1	0	0	0	0	1	0	0	0	1741	652	23	1	975	1	C13orf34	13	73320708	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1462	73320708	41849170	14174	22325											
DIS3	22894	broad.mit.edu	37	chr13	73346361	73346361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatatcagtacatcctggtGggtctacactacaaatacac	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73346361	T	T	73346361	3	4	9	1	0	0	0	0	1	0	0	0	4575	1348	47	2	1485	2	DIS3	13	73346361	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25653	73346361	41823517	14175	22326											
KLF5	688	broad.mit.edu	37	chr13	73636407	73636407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatctttctgtccctaccCagcagggccacctgtaccag	7	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73636407	A	A	73636407	3	1	9	1	0	0	0	0	1	0	0	0	8420	595	21	2	676	2	KLF5	13	73636407	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	290046	73636407	41533471	14176	22327											
KLF12	11278	broad.mit.edu	37	chr13	74420058	74420058	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgtagacaacaggcacCgactgtaccaccacggggat	12	12	0	1	rs140653153	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74420058	A	A	74420058	2	1	9	1	0	0	0	0	0	0	0	1	8411	639	23	1		1	KLF12	13	74420058	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	783651	74420058	40749820	14177	22328											
TBC1D4	9882	broad.mit.edu	37	chr13	75861015	75861015	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattgactagagcatccgcGggcagcagcttccggagttg	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75861015	T	T	75861015	2	4	9	1	0	0	0	0	0	0	0	1	15744	1103	39	1		1	TBC1D4	13	75861015	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1440957	75861015	39308863	14178	22329											
TBC1D4	9882	broad.mit.edu	37	chr13	75876484	75876484	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaatctgtgtctgagtcGgtactgtaaagccagaaact	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75876484	T	T	75876484	2	4	9	1	0	0	0	0	0	0	0	1	15744	1124	39	1		1	TBC1D4	13	75876484	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15469	75876484	39293394	14179	22330											
TBC1D4	9882	broad.mit.edu	37	chr13	75901836	75901836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgcatattaccatatcGgtgctgactttgttaagttg	9	7	0	1	rs75169380	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75901836	T	T	75901836	1	4	9	0	1	0	0	0	0	0	0	0	15744	1131	39	1		1	TBC1D4	13	75901836	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25352	75901836	39268042	14180	22331											
COMMD6	170622	broad.mit.edu	37	chr13	76100731	76100731	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaatccgtcttcacacCgtttcaataactgcagcaat	5	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76100731	A	A	76100731	2	1	9	1	0	0	0	0	0	0	0	1	3752	639	23	1		1	COMMD6	13	76100731	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	198895	76100731	39069147	14181	22332											
LMO7	4008	broad.mit.edu	37	chr13	76378644	76378644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagaagttgggcaagccCggtttatacagaagcagatg	13	7	0	4	rs140498988	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76378644	A	A	76378644	3	1	9	1	0	0	0	0	1	0	0	0	8929	652	23	1	1071	1	LMO7	13	76378644	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	277913	76378644	38791234	14182	22333											
LMO7	4008	broad.mit.edu	37	chr13	76395597	76395597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcttctctgcgttcacGgagcacacaaatggaatcaa	8	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76395597	T	T	76395597	3	4	9	1	0	0	0	0	1	0	0	0	8929	1116	39	1	2706	1	LMO7	13	76395597	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16953	76395597	38774281	14183	22334											
LMO7	4008	broad.mit.edu	37	chr13	76395620	76395620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcacacaaatggaatcaactCgtgtttcagcttctctcccc	6	14	3	0	rs9593132	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76395620	A	A	76395620	3	1	9	1	0	0	0	0	1	0	0	0	8929	884	31	3	2729	3	LMO7	13	76395620	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	76395620	38774258	14184	22335											
LMO7	4008	broad.mit.edu	37	chr13	76397896	76397896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccttctcatctctttccCaagaccaggctgccacttct	4	19	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76397896	A	A	76397896	3	1	9	1	0	0	0	0	1	0	0	0	8929	595	21	2	3054	2	LMO7	13	76397896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2276	76397896	38771982	14185	22336											
LMO7	4008	broad.mit.edu	37	chr13	76414308	76414308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggactgaattagtacacCgtagcatgcttaccatgatt	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76414308	A	A	76414308	1	1	9	0	1	0	0	0	0	0	0	0	8929	667	23	1		1	LMO7	13	76414308	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16412	76414308	38755570	14186	22337											
LMO7	4008	broad.mit.edu	37	chr13	76415878	76415878	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagacagagaaggaaccCgagcaggagaagaggagagg	16	7	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76415878	A	A	76415878	2	1	9	1	0	0	0	0	0	0	0	1	8929	644	23	1		1	LMO7	13	76415878	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1570	76415878	38754000	14187	22338											
FBXL3	26224	broad.mit.edu	37	chr13	77592779	77592779	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgagcagttgaaataagtcCaagtgtttttaaagagcaat	9	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77592779	A	A	77592779	4	1	9	1	0	0	0	0	0	1	0	0	5777	603	21	2	871	2	FBXL3	13	77592779	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1176901	77592779	37577099	14188	22339											
MYCBP2	23077	broad.mit.edu	37	chr13	77636770	77636770	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttcccatccatctcccCgaggagagacgatctacgtg	8	15	2	1	rs41287042		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77636770	A	A	77636770	2	1	9	1	0	0	0	0	0	0	0	1	10112	639	23	1		1	MYCBP2	13	77636770	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43991	77636770	37533108	14189	22340											
MYCBP2	23077	broad.mit.edu	37	chr13	77768368	77768368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatctcctccatcaggaccCaattcaaacagctaaggaaa	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77768368	A	A	77768368	3	1	9	1	0	0	0	0	1	0	0	0	10112	593	21	2	10409	2	MYCBP2	13	77768368	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131598	77768368	37401510	14190	22341											
MYCBP2	23077	broad.mit.edu	37	chr13	77807305	77807305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacctttgtgcttgtccCgtttatgctttagctgtgct	8	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77807305	A	A	77807305	3	1	9	1	0	0	0	0	1	0	0	0	10112	652	23	1	11577	1	MYCBP2	13	77807305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38937	77807305	37362573	14191	22342											
MYCBP2	23077	broad.mit.edu	37	chr13	77841978	77841978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactacttgaaacatacctGgtaacatcacagtaccatct	5	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77841978	T	T	77841978	3	4	9	1	0	0	0	0	1	0	0	0	10112	1348	47	2	12985	2	MYCBP2	13	77841978	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34673	77841978	37327900	14192	22343											
MYCBP2	23077	broad.mit.edu	37	chr13	77844174	77844174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttctgtttctaatacGggatgtagaattgtatatat	7	4	3	1	rs146972135		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77844174	T	T	77844174	3	4	9	1	0	0	0	0	1	0	0	0	10112	1116	39	1	13131	1	MYCBP2	13	77844174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2196	77844174	37325704	14193	22344											
SCEL	8796	broad.mit.edu	37	chr13	78130761	78130761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccactcagggaaccacacGgaagcagcaggattttcacg	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78130761	T	T	78130761	3	4	9	1	0	0	0	0	1	0	0	0	14000	1116	39	1	80	1	SCEL	13	78130761	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	286587	78130761	37039117	14194	22345											
SCEL	8796	broad.mit.edu	37	chr13	78143516	78143516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaaacaggcaacctggcGgttcattgaatgccaacacc	8	12	1	1	rs143114727	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78143516	T	T	78143516	3	4	9	1	0	0	0	0	1	0	0	0	14000	1116	39	1	435	1	SCEL	13	78143516	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12755	78143516	37026362	14195	22346											
SCEL	8796	broad.mit.edu	37	chr13	78173906	78173906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattttattaagacagacCattttgattgagtcccagat	7	6	0	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78173906	A	A	78173906	1	1	9	0	1	0	0	0	0	0	0	0	14000	609	21	2		2	SCEL	13	78173906	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30390	78173906	36995972	14196	22347											
SCEL	8796	broad.mit.edu	37	chr13	78188067	78188067	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacatattaatgtcagcccCaaagctgtcaaaaacactga	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78188067	A	A	78188067	2	1	9	1	0	0	0	0	0	0	0	1	14000	581	21	2		2	SCEL	13	78188067	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14161	78188067	36981811	14197	22348											
SLAIN1	122060	broad.mit.edu	37	chr13	78320767	78320767	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatatgaccaatacagtctGgaggatgaagaggaatttga	12	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78320767	T	T	78320767	2	4	9	1	0	0	0	0	0	0	0	1	14478	1335	47	2		2	SLAIN1	13	78320767	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	132700	78320767	36849111	14198	22349											
EDNRB	1910	broad.mit.edu	37	chr13	78477671	78477671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactcagcacagtgattccCacagaggctttctgtatgaa	9	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78477671	A	A	78477671	2	1	9	1	0	0	0	0	0	0	0	1	4960	581	21	2		2	EDNRB	13	78477671	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	156904	78477671	36692207	14199	22350											
POU4F1	5457	broad.mit.edu	37	chr13	79177496	79177496	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatatccacaaacactcCgaaagtccgcgggaaagtgc	9	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79177496	A	A	79177496	1	1	9	0	1	0	0	0	0	0	0	0	12374	667	23	1		1	POU4F1	13	79177496	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	699825	79177496	35992382	14200	22351											
RNF219	79596	broad.mit.edu	37	chr13	79189971	79189971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctgaaacaagcagcttGggggtttgatttcattagtt	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79189971	T	T	79189971	3	4	9	1	0	0	0	0	1	0	0	0	13593	1348	47	2	259	2	RNF219	13	79189971	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12475	79189971	35979907	14201	22352											
RNF219	79596	broad.mit.edu	37	chr13	79190235	79190235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaaaaccgttattacaaGggctcttgctgttgtctgac	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79190235	T	T	79190235	3	4	9	1	0	0	0	0	1	0	0	0	13593	1000	35	2	523	2	RNF219	13	79190235	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	264	79190235	35979643	14202	22353											
NDFIP2	54602	broad.mit.edu	37	chr13	80122529	80122529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggatatttcttgtacttGgtaagtttattcttaatgca	9	4	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80122529	T	T	80122529	3	4	9	1	0	0	0	0	1	0	0	0	10341	1362	47	2	929	2	NDFIP2	13	80122529	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	932294	80122529	35047349	14203	22354											
SLITRK1	114798	broad.mit.edu	37	chr13	84454325	84454325	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccccgcgaatttctcccGggacagcgtgtccaggtaat	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84454325	T	T	84454325	2	4	9	1	0	0	0	0	0	0	0	1	14856	1115	39	1		1	SLITRK1	13	84454325	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4331796	84454325	30715553	14204	22355											
SLITRK6	84189	broad.mit.edu	37	chr13	86368421	86368421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaaaattctgttgattgGttcgtggttttgtatttcat	9	3	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86368421	T	T	86368421	3	4	9	1	0	0	0	0	1	0	0	0	14861	1252	44	3	306	3	SLITRK6	13	86368421	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1914096	86368421	28801457	14205	22356											
SLITRK6	84189	broad.mit.edu	37	chr13	86368865	86368865	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcgtaaaatagtatcagcCgtatttgttgttgttgcagg	11	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86368865	A	A	86368865	2	1	9	1	0	0	0	0	0	0	0	1	14861	639	23	1		1	SLITRK6	13	86368865	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	444	86368865	28801013	14206	22357											
SLITRK5	26050	broad.mit.edu	37	chr13	88327846	88327846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgtgagctgtgaaaaccGggggatcatcagtctctctg	12	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88327846	T	T	88327846	3	4	9	1	0	0	0	0	1	0	0	0	14860	1116	39	1	205	1	SLITRK5	13	88327846	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1958981	88327846	26842032	14207	22358											
SLITRK5	26050	broad.mit.edu	37	chr13	88327881	88327881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgaaattagccctcccCgtttcccaatctaccacctc	3	18	2	1	rs149899708		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88327881	A	A	88327881	3	1	9	1	0	0	0	0	1	0	0	0	14860	652	23	1	240	1	SLITRK5	13	88327881	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	88327881	26841997	14208	22359											
SLITRK5	26050	broad.mit.edu	37	chr13	88328010	88328010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatccaggacattgagaccGgggctttccatgggctacgg	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88328010	T	T	88328010	3	4	9	1	0	0	0	0	1	0	0	0	14860	1116	39	1	369	1	SLITRK5	13	88328010	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	129	88328010	26841868	14209	22360											
SLITRK5	26050	broad.mit.edu	37	chr13	88328552	88328552	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacgcctttgagcaccacGgggtatttacacaccacccc	8	16	0	2	rs150222919	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88328552	T	T	88328552	2	4	9	1	0	0	0	0	0	0	0	1	14860	1103	39	1		1	SLITRK5	13	88328552	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	542	88328552	26841326	14210	22361											
SLITRK5	26050	broad.mit.edu	37	chr13	88330402	88330402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggtgctctacagcccccCgagtgctgtctttgtagaac	10	14	2	1	rs139601648		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88330402	A	A	88330402	3	1	9	1	0	0	0	0	1	0	0	0	14860	652	23	1	2761	1	SLITRK5	13	88330402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1850	88330402	26839476	14211	22362											
GPC5	2262	broad.mit.edu	37	chr13	92346024	92346024	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcgttggaagaactctcGgatgcaatgcatggaacata	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92346024	T	T	92346024	2	4	9	1	0	0	0	0	0	0	0	1	6666	1103	39	1		1	GPC5	13	92346024	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4015622	92346024	22823854	14212	22363											
GPC5	2262	broad.mit.edu	37	chr13	93518681	93518681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggtgatgttacttcccGggatttggtaactgaactct	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93518681	T	T	93518681	3	4	9	1	0	0	0	0	1	0	0	0	6666	1116	39	1	1738	1	GPC5	13	93518681	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1172657	93518681	21651197	14213	22364											
TGDS	23483	broad.mit.edu	37	chr13	95248373	95248373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaccccacggttcctcCcaacacgccgccgacatctc	8	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95248373	A	A	95248373	3	1	9	1	0	0	0	0	1	0	0	0	15937	624	22	2	1082	2	TGDS	13	95248373	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1729692	95248373	19921505	14214	22365											
GPR180	160897	broad.mit.edu	37	chr13	95271403	95271403	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctttcttctcttcacaGggttacatgagttctttttc	5	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95271403	T	T	95271403	5	4	9	1	0	0	0	0	0	0	1	0	6741	1014	35	2	519	2	GPR180	13	95271403	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	23030	95271403	19898475	14215	22366											
GPR180	160897	broad.mit.edu	37	chr13	95271914	95271914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggattacagtttaagttccCatatgtcttacttagtttct	6	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95271914	A	A	95271914	1	1	9	0	1	0	0	0	0	0	0	0	6741	609	21	2		2	GPR180	13	95271914	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	511	95271914	19897964	14216	22367											
ABCC4	10257	broad.mit.edu	37	chr13	95860158	95860158	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtcctgatcctggcatcCgtgaaagttgcagttttact	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95860158	A	A	95860158	2	1	9	1	0	0	0	0	0	0	0	1	55	639	23	1		1	ABCC4	13	95860158	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	588244	95860158	19309720	14217	22368											
DZIP1	22873	broad.mit.edu	37	chr13	96239797	96239797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtaacagctcacctgcGggcttgggagaatcatcagt	12	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96239797	T	T	96239797	2	4	9	1	0	0	0	0	0	0	0	1	4903	1103	39	1		1	DZIP1	13	96239797	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	379639	96239797	18930081	14218	22369											
DZIP1	22873	broad.mit.edu	37	chr13	96258370	96258370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattaaagcataagcatcCgaacatgatggtagccaaat	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96258370	A	A	96258370	1	1	9	0	1	0	0	0	0	0	0	0	4903	667	23	1		1	DZIP1	13	96258370	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18573	96258370	18911508	14219	22370											
DZIP1	22873	broad.mit.edu	37	chr13	96264266	96264266	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgttgcttaaagaagcacGgtgccacactgccgccagac	11	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96264266	T	T	96264266	1	4	9	0	1	0	0	0	0	0	0	0	4903	1131	39	1		1	DZIP1	13	96264266	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5896	96264266	18905612	14220	22371											
DZIP1	22873	broad.mit.edu	37	chr13	96293496	96293496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggacaggcctatcaaatGggaactgagttgtttactgg	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96293496	T	T	96293496	1	4	9	0	1	0	0	0	0	0	0	0	4903	1363	47	2		2	DZIP1	13	96293496	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	29230	96293496	18876382	14221	22372											
DNAJC3	5611	broad.mit.edu	37	chr13	96394901	96394901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttaggtgtttcctgttcCttctctgttgggactccagc	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96394901	A	A	96394901	1	1	9	0	1	0	0	0	0	0	0	0	4687	696	24	2		2	DNAJC3	13	96394901	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	101405	96394901	18774977	14222	22373											
DNAJC3	5611	broad.mit.edu	37	chr13	96394994	96394994	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgactttcagatgcctctCgtcagccatctctgaatgcc	9	13	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96394994	A	A	96394994	1	1	9	0	1	0	0	0	0	0	0	0	4687	899	31	3		3	DNAJC3	13	96394994	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	96394994	18774884	14223	22374											
DNAJC3	5611	broad.mit.edu	37	chr13	96443199	96443199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggaggcggcggcaaccCtttccacagaagctggaact	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96443199	A	A	96443199	3	1	9	1	0	0	0	0	1	0	0	0	4687	681	24	2	1476	2	DNAJC3	13	96443199	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48205	96443199	18726679	14224	22375											
UGGT2	55757	broad.mit.edu	37	chr13	96508488	96508488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaagaattttgtaacccCaaataatcctctgtctttca	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96508488	A	A	96508488	3	1	9	1	0	0	0	0	1	0	0	0	17068	595	21	2	642	2	UGGT2	13	96508488	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65289	96508488	18661390	14225	22376											
UGGT2	55757	broad.mit.edu	37	chr13	96515942	96515942	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcggtaaggatatcttcCttaattttgtctgtttcttt	6	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96515942	A	A	96515942	3	1	9	1	0	0	0	0	1	0	0	0	17068	680	24	2	1001	2	UGGT2	13	96515942	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7454	96515942	18653936	14226	22377											
UGGT2	55757	broad.mit.edu	37	chr13	96540244	96540244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctattggaaagaaattccCatgtttgatattaaataata	5	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96540244	A	A	96540244	1	1	9	0	1	0	0	0	0	0	0	0	17068	609	21	2		2	UGGT2	13	96540244	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24302	96540244	18629634	14227	22378											
UGGT2	55757	broad.mit.edu	37	chr13	96579527	96579527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatcaaagtatttatacGgggtacaacattattcctat	5	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96579527	T	T	96579527	3	4	9	1	0	0	0	0	1	0	0	0	17068	1116	39	1	2597	1	UGGT2	13	96579527	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39283	96579527	18590351	14228	22379											
HS6ST3	266722	broad.mit.edu	37	chr13	97485216	97485216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagatcaacgagggtgccCgccaacgcattgaggatcta	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97485216	A	A	97485216	3	1	9	1	0	0	0	0	1	0	0	0	7439	652	23	1	1186	1	HS6ST3	13	97485216	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	905689	97485216	17684662	14229	22380											
OXGR1	27199	broad.mit.edu	37	chr13	97639335	97639335	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcagtttgcagtccatGggtcagagtgtggataatcg	14	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97639335	C	C	97639335	3	2	9	1	0	0	0	0	1	0	0	0	11426	1348	47	4	338	4	OXGR1	13	97639335	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	154119	97639335	17530543	14230	22381											
MBNL2	10150	broad.mit.edu	37	chr13	98017389	98017389	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccattgcatgacatcaGggtcagttttgtgcatgaca	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98017389	T	T	98017389	5	4	9	1	0	0	0	0	0	0	1	0	9447	1014	35	2	980	2	MBNL2	13	98017389	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	378054	98017389	17152489	14231	22382											
MBNL2	10150	broad.mit.edu	37	chr13	98017412	98017412	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagttttgtgcatgacaccCgctaccagtattggtaggtt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98017412	A	A	98017412	2	1	9	1	0	0	0	0	0	0	0	1	9447	639	23	1		1	MBNL2	13	98017412	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	98017412	17152466	14232	22383											
IPO5	3843	broad.mit.edu	37	chr13	98666302	98666302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttaacaatgaaacgtgttcGagtggcagcagcggaatcca	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98666302	T	T	98666302	3	4	9	1	0	0	0	0	1	0	0	0	7866	1058	37	3	2291	3	IPO5	13	98666302	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	648890	98666302	16503576	14233	22384											
FARP1	10160	broad.mit.edu	37	chr13	98865556	98865556	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggccccggaaaattcGgggatcagtaccttggaacg	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98865556	T	T	98865556	2	4	9	1	0	0	0	0	0	0	0	1	5733	1103	39	1		1	FARP1	13	98865556	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	199254	98865556	16304322	14234	22385											
FARP1	10160	broad.mit.edu	37	chr13	99042251	99042251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaattcctgatggccagtcGggatttctgcaagtccttct	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99042251	T	T	99042251	3	4	9	1	0	0	0	0	1	0	0	0	5733	1116	39	1	1153	1	FARP1	13	99042251	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	176695	99042251	16127627	14235	22386											
FARP1	10160	broad.mit.edu	37	chr13	99042339	99042339	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaaccaaagcccaagccCgtcctctttagccgggggtc	9	17	1	0	rs139107368		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99042339	A	A	99042339	2	1	9	1	0	0	0	0	0	0	0	1	5733	639	23	1		1	FARP1	13	99042339	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	99042339	16127539	14236	22387											
STK24	8428	broad.mit.edu	37	chr13	99116019	99116019	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtacctgtcgatgagctcGgtcaagtaggaagttttctt	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99116019	T	T	99116019	2	4	9	1	0	0	0	0	0	0	0	1	15411	1103	39	1		1	STK24	13	99116019	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	73680	99116019	16053859	14237	22388											
SLC15A1	6564	broad.mit.edu	37	chr13	99339773	99339773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagatttaaattaagtccCatcagcattttctgcaggca	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99339773	A	A	99339773	1	1	9	0	1	0	0	0	0	0	0	0	14511	609	21	2		2	SLC15A1	13	99339773	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	223754	99339773	15830105	14238	22389											
SLC15A1	6564	broad.mit.edu	37	chr13	99361880	99361880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcacagcatcgaagatcGggaccatgatcacgatcagg	11	11	2	2	rs147969208		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99361880	T	T	99361880	3	4	9	1	0	0	0	0	1	0	0	0	14511	1116	39	1	1153	1	SLC15A1	13	99361880	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22107	99361880	15807998	14239	22390											
SLC15A1	6564	broad.mit.edu	37	chr13	99378482	99378482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtggacaggttatcatccCagctgatgaaatttgtgaag	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99378482	A	A	99378482	3	1	9	1	0	0	0	0	1	0	0	0	14511	595	21	2	2066	2	SLC15A1	13	99378482	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16602	99378482	15791396	14240	22391											
DOCK9	23348	broad.mit.edu	37	chr13	99462607	99462607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaacgtgacatggcaccCgttgcagaatgctaagtgct	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99462607	A	A	99462607	1	1	9	0	1	0	0	0	0	0	0	0	4734	667	23	1		1	DOCK9	13	99462607	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	84125	99462607	15707271	14241	22392											
DOCK9	23348	broad.mit.edu	37	chr13	99489850	99489850	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcagaacatctgcgtcCgagtggccatagcctgcatg	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99489850	A	A	99489850	2	1	9	1	0	0	0	0	0	0	0	1	4734	639	23	1		1	DOCK9	13	99489850	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27243	99489850	15680028	14242	22393											
DOCK9	23348	broad.mit.edu	37	chr13	99505747	99505747	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttatcacagcgaaccacGgaatttcccaatgtgctact	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99505747	T	T	99505747	2	4	9	1	0	0	0	0	0	0	0	1	4734	1103	39	1		1	DOCK9	13	99505747	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15897	99505747	15664131	14243	22394											
UBAC2	337867	broad.mit.edu	37	chr13	99890625	99890625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgcttttcacgcatgtGgttttttaaatcttaggaac	7	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99890625	T	T	99890625	1	4	9	0	1	0	0	0	0	0	0	0	16961	1363	47	2		2	UBAC2	13	99890625	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	384878	99890625	15279253	14244	22395											
UBAC2	337867	broad.mit.edu	37	chr13	99890739	99890739	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgccctctccctcctgctCgccctcctcctgcctcactg	6	22	2	0	rs141864081		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99890739	A	A	99890739	2	1	9	1	0	0	0	0	0	0	0	1	16961	893	31	3		3	UBAC2	13	99890739	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	99890739	15279139	14245	22396											
UBAC2	337867	broad.mit.edu	37	chr13	99890831	99890831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctctgcctcattggcccCtgagaggagagcggacagtt	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99890831	A	A	99890831	1	1	9	0	1	0	0	0	0	0	0	0	16961	696	24	2		2	UBAC2	13	99890831	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	99890831	15279047	14246	22397											
GPR18	2841	broad.mit.edu	37	chr13	99907181	99907181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccgtagactaccagatcGgaaactttttctgcgcatgc	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99907181	T	T	99907181	2	4	9	1	0	0	0	0	0	0	0	1	6740	1124	39	1		1	GPR18	13	99907181	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16350	99907181	15262697	14247	22398											
GPR18	2841	broad.mit.edu	37	chr13	99907620	99907620	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcttgaggcaggtggcGggagtggagtctttatctgg	17	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99907620	T	T	99907620	2	4	9	1	0	0	0	0	0	0	0	1	6740	1103	39	1		1	GPR18	13	99907620	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	439	99907620	15262258	14248	22399											
UBAC2	337867	broad.mit.edu	37	chr13	100008365	100008365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaagtaaacaagacttgGgacacatgtctgtcagactg	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100008365	T	T	100008365	1	4	9	0	1	0	0	0	0	0	0	0	16961	1247	43	2		2	UBAC2	13	100008365	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	100745	100008365	15161513	14249	22400											
UBAC2	337867	broad.mit.edu	37	chr13	100008499	100008499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcctcattgccatcccCaatcagtccctggaacacca	5	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100008499	A	A	100008499	1	1	9	0	1	0	0	0	0	0	0	0	16961	609	21	2		2	UBAC2	13	100008499	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	134	100008499	15161379	14250	22401											
CLYBL	171425	broad.mit.edu	37	chr13	100517099	100517099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaaaccctgaaggtcGggcctcaagtaggtctcttt	12	9	2	3	rs145666717	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100517099	T	T	100517099	3	4	9	1	0	0	0	0	1	0	0	0	3605	1116	39	1	586	1	CLYBL	13	100517099	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	508600	100517099	14652779	14251	22402											
CLYBL	171425	broad.mit.edu	37	chr13	100518535	100518535	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggatattctctacgccCggcaaaagattgttgtcata	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100518535	A	A	100518535	2	1	9	1	0	0	0	0	0	0	0	1	3605	643	23	1		1	CLYBL	13	100518535	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1436	100518535	14651343	14252	22403											
PCCA	5095	broad.mit.edu	37	chr13	100914983	100914983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccttctttttttcacagGgatggttttagattgtcatc	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100914983	T	T	100914983	3	4	9	1	0	0	0	0	1	0	0	0	11598	1246	43	2	755	2	PCCA	13	100914983	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	396448	100914983	14254895	14253	22404											
PCCA	5095	broad.mit.edu	37	chr13	100982900	100982900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcactaaatttctctcCgatgtgtatcctgatggctt	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100982900	A	A	100982900	2	1	9	1	0	0	0	0	0	0	0	1	11598	639	23	1		1	PCCA	13	100982900	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	67917	100982900	14186978	14254	22405											
TMTC4	84899	broad.mit.edu	37	chr13	101278338	101278338	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccataccttacagcttcccGgtagtatctgatggcagctg	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101278338	T	T	101278338	2	4	9	1	0	0	0	0	0	0	0	1	16386	1115	39	1		1	TMTC4	13	101278338	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	295438	101278338	13891540	14255	22406											
NALCN	259232	broad.mit.edu	37	chr13	101726896	101726896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccatatttcacagtacCaaataaaacaactccagcaa	2	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101726896	A	A	101726896	3	1	9	1	0	0	0	0	1	0	0	0	10242	594	21	2	1180	2	NALCN	13	101726896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	448558	101726896	13442982	14256	22407											
NALCN	259232	broad.mit.edu	37	chr13	101742367	101742367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattccaataagcagcaccCgaaggcaaatatctgtagcc	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101742367	A	A	101742367	1	1	9	0	1	0	0	0	0	0	0	0	10242	667	23	1		1	NALCN	13	101742367	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15471	101742367	13427511	14257	22408											
NALCN	259232	broad.mit.edu	37	chr13	101747932	101747932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatatacttaccaaacacGgggcacccaaaatccaggtt	7	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101747932	T	T	101747932	3	4	9	1	0	0	0	0	1	0	0	0	10242	1116	39	1	2022	1	NALCN	13	101747932	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5565	101747932	13421946	14258	22409											
NALCN	259232	broad.mit.edu	37	chr13	101763489	101763489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttacctgcgctcttggcGgatatgatgctgcacgctga	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101763489	T	T	101763489	3	4	9	1	0	0	0	0	1	0	0	0	10242	1116	39	1	3039	1	NALCN	13	101763489	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15557	101763489	13406389	14259	22410											
NALCN	259232	broad.mit.edu	37	chr13	101797106	101797106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaattaaagaagtattttGgtacctgattttaggaactg	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101797106	T	T	101797106	1	4	9	0	1	0	0	0	0	0	0	0	10242	1363	47	2		2	NALCN	13	101797106	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	33617	101797106	13372772	14260	22411											
NALCN	259232	broad.mit.edu	37	chr13	101833492	101833492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagccaaggatgctctccCaagccacgcagatgccaagg	12	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101833492	A	A	101833492	1	1	9	0	1	0	0	0	0	0	0	0	10242	609	21	2		2	NALCN	13	101833492	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36386	101833492	13336386	14261	22412											
NALCN	259232	broad.mit.edu	37	chr13	101890169	101890169	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaagagtagttccaattacGagtagtagttcgaatttgtg	11	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101890169	T	T	101890169	2	4	9	1	0	0	0	0	0	0	0	1	10242	1045	37	3		3	NALCN	13	101890169	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56677	101890169	13279709	14262	22413											
FGF14	2259	broad.mit.edu	37	chr13	102521131	102521131	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaaccctgttttcactcCctggatggcaacaacacgta	6	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102521131	A	A	102521131	4	1	9	1	0	0	0	0	0	1	0	0	5900	632	22	2	403	2	FGF14	13	102521131	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	630962	102521131	12648747	14263	22414											
TPP2	7174	broad.mit.edu	37	chr13	103275272	103275272	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggacttgagtaaatctacCgtgttgagaaactacaaaga	11	6	1	3	rs149008480	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103275272	A	A	103275272	2	1	9	1	0	0	0	0	0	0	0	1	16536	639	23	1		1	TPP2	13	103275272	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	754141	103275272	11894606	14264	22415											
TPP2	7174	broad.mit.edu	37	chr13	103275297	103275297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaactacaaagaagccCaagaatatggctcttttggc	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103275297	A	A	103275297	3	1	9	1	0	0	0	0	1	0	0	0	16536	595	21	2	713	2	TPP2	13	103275297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	103275297	11894581	14265	22416											
TPP2	7174	broad.mit.edu	37	chr13	103275341	103275341	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagatgttgaattactcCgttaatatatacgatgatgg	10	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103275341	A	A	103275341	2	1	9	1	0	0	0	0	0	0	0	1	16536	639	23	1		1	TPP2	13	103275341	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	103275341	11894537	14266	22417											
TPP2	7174	broad.mit.edu	37	chr13	103297267	103297267	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcctttgtagcatgcatcGgaaggaatcaaccgctttga	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103297267	T	T	103297267	2	4	9	1	0	0	0	0	0	0	0	1	16536	1103	39	1		1	TPP2	13	103297267	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21926	103297267	11872611	14267	22418											
TPP2	7174	broad.mit.edu	37	chr13	103301422	103301422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatagttttgcacttctaGggaagaagaaatcaagcaat	8	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103301422	T	T	103301422	3	4	9	1	0	0	0	0	1	0	0	0	16536	1000	35	2	2880	2	TPP2	13	103301422	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4155	103301422	11868456	14268	22419											
C13orf39	196541	broad.mit.edu	37	chr13	103346732	103346732	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttaccttctaggactccCccggtgctgtctttctgcgg	11	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103346732	A	A	103346732	2	1	9	1	0	0	0	0	0	0	0	1	1745	610	22	2		2	C13orf39	13	103346732	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	45310	103346732	11823146	14269	22420											
KDELC1	79070	broad.mit.edu	37	chr13	103445647	103445647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattatcctgtaaaatctGggcttaaattatctattaca	4	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103445647	T	T	103445647	1	4	9	0	1	0	0	0	0	0	0	0	8187	1363	47	2		2	KDELC1	13	103445647	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	98915	103445647	11724231	14270	22421											
KDELC1	79070	broad.mit.edu	37	chr13	103446099	103446099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagggcagttcatctccCgtagccaggctgcactatct	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103446099	A	A	103446099	3	1	9	1	0	0	0	0	1	0	0	0	8187	652	23	1	1094	1	KDELC1	13	103446099	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	452	103446099	11723779	14271	22422											
ERCC5	2073	broad.mit.edu	37	chr13	103459830	103459830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttatgccatctgttcGgactatgcctttctcaacca	5	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103459830	T	T	103459830	2	4	9	1	0	0	0	0	0	0	0	1	5258	1103	39	1		1	ERCC5	13	103459830	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13731	103459830	11710048	14272	22423											
ERCC5	2073	broad.mit.edu	37	chr13	103513971	103513971	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacattcaggacacatcCgaaggcagtatgaagatgaa	10	8	1	3	rs121434572		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103513971	A	A	103513971	2	1	9	1	0	0	0	0	0	0	0	1	5258	644	23	1		1	ERCC5	13	103513971	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54141	103513971	11655907	14273	22424											
ERCC5	2073	broad.mit.edu	37	chr13	103518543	103518543	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttcagtcagactaaatgCaggctttttgtaaacaaaac	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103518543	T	T	103518543	1	4	9	0	1	0	0	0	0	0	0	0	5258	725	25	4		4	ERCC5	13	103518543	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4572	103518543	11651335	14274	22425											
ERCC5	2073	broad.mit.edu	37	chr13	103525620	103525620	+	Missense_Mutation	SNP	G	T	T													tgcatgcatattttgtcagcGgtatttcggctggaacagaa					rs149859074		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103525620	T	T	103525620	3	4	9	1	0	0	0	0	1	0	0	0	5258	1116	39	1	2945	1	ERCC5	13	103525620	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7077	103525620	11644258	14275	22426	149	2									
ERCC5	2073	broad.mit.edu	37	chr13	103525628	103525628	+	Missense_Mutation	SNP	G	T	T													tattttgtcagcggtatttcGgctggaacagaacgaagaca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103525628	T	T	103525628	3	4	9	1	0	0	0	0	1	0	0	0	5258	1116	39	1	2953	1	ERCC5	13	103525628	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8	103525628	11644250	14276	22427	149	2									
EFNB2	1948	broad.mit.edu	37	chr13	107145742	107145742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccgaggatgttgttcccCgaatgtccggcgctgttgcc	13	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107145742	A	A	107145742	2	1	9	1	0	0	0	0	0	0	0	1	4996	639	23	1		1	EFNB2	13	107145742	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3620114	107145742	8024136	14277	22428											
ARGLU1	55082	broad.mit.edu	37	chr13	107211834	107211834	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctgtcgctcgagttcttcGagcaactgcttttccatgat	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107211834	T	T	107211834	2	4	9	1	0	0	0	0	0	0	0	1	862	1045	37	3		3	ARGLU1	13	107211834	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66092	107211834	7958044	14278	22429											
MYO16	23026	broad.mit.edu	37	chr13	109379877	109379877	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagacttctggacgccCatgcacattgcctgtgcctg	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109379877	A	A	109379877	2	1	9	1	0	0	0	0	0	0	0	1	10158	581	21	2		2	MYO16	13	109379877	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2168043	109379877	5790001	14279	22430											
MYO16	23026	broad.mit.edu	37	chr13	109475609	109475609	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcattcacgatcttccCgtactgtcgagtaagctgta	9	10	3	1	rs141132835	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109475609	A	A	109475609	2	1	9	1	0	0	0	0	0	0	0	1	10158	639	23	1		1	MYO16	13	109475609	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95732	109475609	5694269	14280	22431											
MYO16	23026	broad.mit.edu	37	chr13	109817310	109817310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacgtcagaaattacttcCgagactcaagacagaaatgc	8	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109817310	A	A	109817310	2	1	9	1	0	0	0	0	0	0	0	1	10158	639	23	1		1	MYO16	13	109817310	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	341701	109817310	5352568	14281	22432											
IRS2	8660	broad.mit.edu	37	chr13	110437749	110437749	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgcagacaggcacagacGgtacacccccgtcaggttct	12	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110437749	C	C	110437749	3	2	9	1	0	0	0	0	1	0	0	0	7911	1116	39	4	3372	4	IRS2	13	110437749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	620439	110437749	4732129	14282	22433											
COL4A1	1282	broad.mit.edu	37	chr13	110814578	110814578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctgcaggcttcttaccCaagtcctggccatgggcccg	12	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110814578	A	A	110814578	3	1	9	1	0	0	0	0	1	0	0	0	3721	608	21	2	568	2	COL4A1	13	110814578	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	376829	110814578	4355300	14283	22434											
COL4A1	1282	broad.mit.edu	37	chr13	110827079	110827079	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggcttcctgggaaaccCgctatcccttgatctccctg	9	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110827079	A	A	110827079	2	1	9	1	0	0	0	0	0	0	0	1	3721	639	23	1		1	COL4A1	13	110827079	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12501	110827079	4342799	14284	22435											
COL4A1	1282	broad.mit.edu	37	chr13	110830475	110830475	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggagccccgactgtccCgttatgccagggagtccttg	13	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110830475	A	A	110830475	2	1	9	1	0	0	0	0	0	0	0	1	3721	639	23	1		1	COL4A1	13	110830475	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3396	110830475	4339403	14285	22436											
COL4A1	1282	broad.mit.edu	37	chr13	110838916	110838916	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaccctgatgtgagaagaaGaaaaagacaccgttatcaga	10	7	1	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110838916	A	A	110838916	1	1	9	0	1	0	0	0	0	0	0	0	3721	957	33	4		4	COL4A1	13	110838916	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8441	110838916	4330962	14286	22437											
COL4A1	1282	broad.mit.edu	37	chr13	110850913	110850913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtaccaggaaatcctcGgtcacctttttctcctcttt	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110850913	T	T	110850913	2	4	9	1	0	0	0	0	0	0	0	1	3721	1124	39	1		1	COL4A1	13	110850913	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11997	110850913	4318965	14287	22438											
COL4A1	1282	broad.mit.edu	37	chr13	110853281	110853281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaacagaacagttcaccCgtttgtatacacttcttatt	4	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110853281	A	A	110853281	1	1	9	0	1	0	0	0	0	0	0	0	3721	667	23	1		1	COL4A1	13	110853281	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2368	110853281	4316597	14288	22439											
COL4A1	1282	broad.mit.edu	37	chr13	110861832	110861832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctagggagctttaagccCttcttcaggctgacgttatc	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110861832	A	A	110861832	1	1	9	0	1	0	0	0	0	0	0	0	3721	696	24	2		2	COL4A1	13	110861832	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8551	110861832	4308046	14289	22440											
COL4A1	1282	broad.mit.edu	37	chr13	110864216	110864216	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaataacctctactcacGggatttccagcgaaaccagg	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110864216	T	T	110864216	2	4	9	1	0	0	0	0	0	0	0	1	3721	1130	39	1		1	COL4A1	13	110864216	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2384	110864216	4305662	14290	22441											
COL4A1	1282	broad.mit.edu	37	chr13	110864676	110864676	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caattgtggcaaataaaactCtattaacagaatcacactac	4	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110864676	A	A	110864676	1	1	9	0	1	0	0	0	0	0	0	0	3721	928	32	3		3	COL4A1	13	110864676	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	460	110864676	4305202	14291	22442											
COL4A1	1282	broad.mit.edu	37	chr13	110864804	110864804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatacctggggggcctggcGggccgtcttggccaggaatt	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110864804	T	T	110864804	3	4	9	1	0	0	0	0	1	0	0	0	3721	1116	39	1	4850	1	COL4A1	13	110864804	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	128	110864804	4305074	14292	22443											
COL4A1	1282	broad.mit.edu	37	chr13	110866227	110866227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgctatctcaagaatgcGggcaatcttacatccaccca	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110866227	T	T	110866227	1	4	9	0	1	0	0	0	0	0	0	0	3721	1131	39	1		1	COL4A1	13	110866227	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1423	110866227	4303651	14293	22444											
COL4A2	1284	broad.mit.edu	37	chr13	111084622	111084622	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttccaccagatgttatctGggtcctggggtaaagaaaac	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111084622	C	C	111084622	1	2	9	0	1	0	0	0	0	0	0	0	3722	1363	47	4		4	COL4A2	13	111084622	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	218395	111084622	4085256	14294	22445											
COL4A2	1284	broad.mit.edu	37	chr13	111134790	111134790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacattgccgaaatgttacGgagacgtgagactgaaatgt	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111134790	T	T	111134790	1	4	9	0	1	0	0	0	0	0	0	0	3722	1131	39	1		1	COL4A2	13	111134790	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	50168	111134790	4035088	14295	22446											
COL4A2	1284	broad.mit.edu	37	chr13	111134880	111134880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagatagaggctcacctGggatggatggtttccaaggc	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111134880	T	T	111134880	3	4	9	1	0	0	0	0	1	0	0	0	3722	1348	47	2	2898	2	COL4A2	13	111134880	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	90	111134880	4034998	14296	22447											
COL4A2	1284	broad.mit.edu	37	chr13	111141868	111141868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttcggtgagtgttgccCgtccagtgaaaacagggagt	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111141868	A	A	111141868	1	1	9	0	1	0	0	0	0	0	0	0	3722	667	23	1		1	COL4A2	13	111141868	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6988	111141868	4028010	14297	22448											
COL4A2	1284	broad.mit.edu	37	chr13	111142130	111142130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggcaccactggaatacCaggtacgcaagttattttcc	11	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111142130	A	A	111142130	3	1	9	1	0	0	0	0	1	0	0	0	3722	594	21	2	3482	2	COL4A2	13	111142130	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	262	111142130	4027748	14298	22449											
COL4A2	1284	broad.mit.edu	37	chr13	111145565	111145565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacccccgcaggttttccGggactccgtgggatccgcgg	14	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111145565	T	T	111145565	2	4	9	1	0	0	0	0	0	0	0	1	3722	1103	39	1		1	COL4A2	13	111145565	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3435	111145565	4024313	14299	22450											
CARS2	79587	broad.mit.edu	37	chr13	111340148	111340148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaatattttcggttaccCtcaggtacaccgtgggtggg	14	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111340148	A	A	111340148	3	1	9	1	0	0	0	0	1	0	0	0	2684	681	24	2	1247	2	CARS2	13	111340148	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	194583	111340148	3829730	14300	22451											
ANKRD10	55608	broad.mit.edu	37	chr13	111552994	111552994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctatatggaatgctccCcctttctaggattacttgaa	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111552994	A	A	111552994	1	1	9	0	1	0	0	0	0	0	0	0	638	638	22	2		2	ANKRD10	13	111552994	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	212846	111552994	3616884	14301	22452											
ARHGEF7	8874	broad.mit.edu	37	chr13	111862091	111862091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgttttctgcataaatGggctgctttgttgtggtctt	10	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111862091	T	T	111862091	1	4	9	0	1	0	0	0	0	0	0	0	913	1363	47	2		2	ARHGEF7	13	111862091	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	309097	111862091	3307787	14302	22453											
ARHGEF7	8874	broad.mit.edu	37	chr13	111862251	111862251	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgactccgtgtgtgccCggccctcgtctcaccgcata	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111862251	A	A	111862251	2	1	9	1	0	0	0	0	0	0	0	1	913	643	23	1		1	ARHGEF7	13	111862251	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	160	111862251	3307627	14303	22454											
ARHGEF7	8874	broad.mit.edu	37	chr13	111862311	111862311	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatcacagtctttgcacactCggacttcaaaactgttccag	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111862311	A	A	111862311	2	1	9	1	0	0	0	0	0	0	0	1	913	875	31	3		3	ARHGEF7	13	111862311	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	111862311	3307567	14304	22455											
ARHGEF7	8874	broad.mit.edu	37	chr13	111919901	111919901	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcatttctccaggttgccCgaagctcagcagagagtcgg	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111919901	A	A	111919901	2	1	9	1	0	0	0	0	0	0	0	1	913	639	23	1		1	ARHGEF7	13	111919901	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57590	111919901	3249977	14305	22456											
ARHGEF7	8874	broad.mit.edu	37	chr13	111927996	111927996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacgtcacttacatgtccCaggtcctgattcagtgtgcc	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111927996	A	A	111927996	3	1	9	1	0	0	0	0	1	0	0	0	913	595	21	2	1503	2	ARHGEF7	13	111927996	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8095	111927996	3241882	14306	22457											
C13orf28	122258	broad.mit.edu	37	chr13	113047464	113047464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtctgtggctgtttccCagataacctggtaccaactg	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113047464	A	A	113047464	1	1	9	0	1	0	0	0	0	0	0	0	1737	609	21	2		2	C13orf28	13	113047464	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1119468	113047464	2122414	14307	22458											
C13orf28	122258	broad.mit.edu	37	chr13	113052447	113052447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcaacattatcaacacCgttacgtaaggagaaaagca	7	9	2	1	rs139687710	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113052447	A	A	113052447	3	1	9	1	0	0	0	0	1	0	0	0	1737	652	23	1	246	1	C13orf28	13	113052447	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4983	113052447	2117431	14308	22459											
TUBGCP3	10426	broad.mit.edu	37	chr13	113174322	113174322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacaaagtcgtagctggacGgacaagttctggtcttaaca	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113174322	T	T	113174322	3	4	9	1	0	0	0	0	1	0	0	0	16893	1116	39	1	996	1	TUBGCP3	13	113174322	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	121875	113174322	1995556	14309	22460											
TUBGCP3	10426	broad.mit.edu	37	chr13	113210370	113210370	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagatccttactcaccaccCgtatccccttctctcctgga	4	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113210370	A	A	113210370	2	1	9	1	0	0	0	0	0	0	0	1	16893	639	23	1		1	TUBGCP3	13	113210370	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36048	113210370	1959508	14310	22461											
ATP11A	23250	broad.mit.edu	37	chr13	113470340	113470340	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaagcggtcccacaggacGggcaagctttcacggagggg	18	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113470340	C	C	113470340	1	2	9	0	1	0	0	0	0	0	0	0	1123	1131	39	4		4	ATP11A	13	113470340	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	259970	113470340	1699538	14311	22462											
ATP11A	23250	broad.mit.edu	37	chr13	113478674	113478674	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtgtggctatttacacGggaatggaaaccaagatggc	14	6	0	1	rs141087263	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113478674	T	T	113478674	2	4	9	1	0	0	0	0	0	0	0	1	1123	1103	39	1		1	ATP11A	13	113478674	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8334	113478674	1691204	14312	22463											
ATP11A	23250	broad.mit.edu	37	chr13	113487138	113487138	+	Intron	SNP	C	A	A													tctatcttcagtggacgcacCgtgatttgggggttctggga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113487138	A	A	113487138	1	1	9	0	1	0	0	0	0	0	0	0	1123	667	23	1		1	ATP11A	13	113487138	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8464	113487138	1682740	14313	22464	150	2									
ATP11A	23250	broad.mit.edu	37	chr13	113487146	113487146	+	Intron	SNP	G	T	T													cagtggacgcaccgtgatttGggggttctgggaactgcttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113487146	T	T	113487146	1	4	9	0	1	0	0	0	0	0	0	0	1123	1363	47	2		2	ATP11A	13	113487146	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8	113487146	1682732	14314	22465	150	2									
ATP11A	23250	broad.mit.edu	37	chr13	113505554	113505554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagtaaacgcatgcatccCgtcctgagagacaaactggg	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113505554	A	A	113505554	1	1	9	0	1	0	0	0	0	0	0	0	1123	667	23	1		1	ATP11A	13	113505554	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18408	113505554	1664324	14315	22466											
F10	2159	broad.mit.edu	37	chr13	113803343	113803343	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcgacatcgccgtgctcCggctcaagacccccatcacc	7	19	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113803343	A	A	113803343	2	1	9	1	0	0	0	0	0	0	0	1	5379	643	23	1		1	F10	13	113803343	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	297789	113803343	1366535	14316	22467											
PCID2	55795	broad.mit.edu	37	chr13	113832530	113832530	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaacacaccgtggacagGggaggaaatgggttctgctt	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113832530	T	T	113832530	2	4	9	1	0	0	0	0	0	0	0	1	11673	1219	43	2		2	PCID2	13	113832530	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29187	113832530	1337348	14317	22468											
PCID2	55795	broad.mit.edu	37	chr13	113834492	113834492	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagctctggttacttcCgcaaactgcatcaggtgata	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113834492	A	A	113834492	2	1	9	1	0	0	0	0	0	0	0	1	11673	639	23	1		1	PCID2	13	113834492	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1962	113834492	1335386	14318	22469											
PCID2	55795	broad.mit.edu	37	chr13	113850525	113850525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttgtgggcctggaatgctCgcaagaatgatgtactgtat	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113850525	A	A	113850525	3	1	9	1	0	0	0	0	1	0	0	0	11673	884	31	3	961	3	PCID2	13	113850525	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16033	113850525	1319353	14319	22470											
PCID2	55795	broad.mit.edu	37	chr13	113851421	113851421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactggcccagtgtttccGggtctcaagtcccaagtaat	10	12	1	0	rs144449601		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113851421	T	T	113851421	1	4	9	0	1	0	0	0	0	0	0	0	11673	1131	39	1		1	PCID2	13	113851421	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	896	113851421	1318457	14320	22471											
PCID2	55795	broad.mit.edu	37	chr13	113851462	113851462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcatgtgttctatgcGggacagctgccatgaacgac	11	12	1	1	rs140418080	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113851462	T	T	113851462	1	4	9	0	1	0	0	0	0	0	0	0	11673	1131	39	1		1	PCID2	13	113851462	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41	113851462	1318416	14321	22472											
LAMP1	3916	broad.mit.edu	37	chr13	113960850	113960850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatggtgaaaaatggcaacGggaccgcgtgcataatggcc	13	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113960850	T	T	113960850	3	4	9	1	0	0	0	0	1	0	0	0	8689	1116	39	1	118	1	LAMP1	13	113960850	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109388	113960850	1209028	14322	22473											
GRTP1	79774	broad.mit.edu	37	chr13	113979932	113979932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgggctgcaggtgaggcGgggccccctgggaggggact	20	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113979932	T	T	113979932	1	4	9	0	1	0	0	0	0	0	0	0	6876	1131	39	1		1	GRTP1	13	113979932	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19082	113979932	1189946	14323	22474											
GRTP1	79774	broad.mit.edu	37	chr13	114005279	114005279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacgttgtcggggaaggtcCggttcaggtctgtgggaaat	16	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114005279	A	A	114005279	3	1	9	1	0	0	0	0	1	0	0	0	6876	652	23	1	680	1	GRTP1	13	114005279	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25347	114005279	1164599	14324	22475											
DCUN1D2	55208	broad.mit.edu	37	chr13	114112381	114112381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacctgtgactactggcCgtgcatattctacaaaatca	6	12	2	1	rs140928771		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114112381	A	A	114112381	3	1	9	1	0	0	0	0	1	0	0	0	4347	652	23	1	40	1	DCUN1D2	13	114112381	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107102	114112381	1057497	14325	22476											
DCUN1D2	55208	broad.mit.edu	37	chr13	114112452	114112452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaagcaaacagaaaaccCgttagagcaccgtttttatc	7	10	0	2	rs41286640	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114112452	A	A	114112452	1	1	9	0	1	0	0	0	0	0	0	0	4347	667	23	1		1	DCUN1D2	13	114112452	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	71	114112452	1057426	14326	22477											
DCUN1D2	55208	broad.mit.edu	37	chr13	114112463	114112463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaacccgttagagcacCgtttttatctccaaagcact	6	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114112463	A	A	114112463	1	1	9	0	1	0	0	0	0	0	0	0	4347	667	23	1		1	DCUN1D2	13	114112463	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11	114112463	1057415	14327	22478											
DCUN1D2	55208	broad.mit.edu	37	chr13	114138409	114138409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaggaaagccaatgaagcCgctccaggtttgtcccagct	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114138409	A	A	114138409	1	1	9	0	1	0	0	0	0	0	0	0	4347	667	23	1		1	DCUN1D2	13	114138409	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25946	114138409	1031469	14328	22479											
TMCO3	55002	broad.mit.edu	37	chr13	114154349	114154349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taagcaaaatataacaaaacGagaagtggaggatgacttgg	11	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114154349	T	T	114154349	3	4	9	1	0	0	0	0	1	0	0	0	16120	1058	37	3	711	3	TMCO3	13	114154349	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15940	114154349	1015529	14329	22480											
TMCO3	55002	broad.mit.edu	37	chr13	114188468	114188468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagtatctcattggaccCtattatcggaagctgcacat	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114188468	A	A	114188468	2	1	9	1	0	0	0	0	0	0	0	1	16120	668	24	2		2	TMCO3	13	114188468	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34119	114188468	981410	14330	22481											
RASA3	22821	broad.mit.edu	37	chr13	114751071	114751071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgtccagggcaggcacGggagtggcactcactggctt	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114751071	T	T	114751071	1	4	9	0	1	0	0	0	0	0	0	0	13170	1131	39	1		1	RASA3	13	114751071	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	562603	114751071	418807	14331	22482											
RASA3	22821	broad.mit.edu	37	chr13	114781696	114781696	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttttcaaggttttctcCgtctttcaacttcacagggt	8	9	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114781696	A	A	114781696	4	1	9	1	0	0	0	0	0	1	0	0	13170	661	23	1	1294	1	RASA3	13	114781696	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30625	114781696	388182	14332	22483											
RASA3	22821	broad.mit.edu	37	chr13	114782758	114782758	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgcaggtaatgcatcccCgccagcttcatggtctcgtc	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114782758	A	A	114782758	2	1	9	1	0	0	0	0	0	0	0	1	13170	639	23	1		1	RASA3	13	114782758	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1062	114782758	387120	14333	22484											
CDC16	8881	broad.mit.edu	37	chr13	115002433	115002433	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgtcattagtggccGggcgcggtggcttacacctg	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115002433	T	T	115002433	1	4	9	0	1	0	0	0	0	0	0	0	3088	1131	39	1		1	CDC16	13	115002433	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	219675	115002433	167445	14334	22485											
CDC16	8881	broad.mit.edu	37	chr13	115007623	115007623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctatctgtcttctacgcGggaaaatctatgatgctcta	8	9	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115007623	T	T	115007623	3	4	9	1	0	0	0	0	1	0	0	0	3088	1116	39	1	431	1	CDC16	13	115007623	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5190	115007623	162255	14335	22486											
ZNF828	283489	broad.mit.edu	37	chr13	115090734	115090734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtcccagaaaagttccCgtggtggttctcctgatctc	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115090734	A	A	115090734	3	1	9	1	0	0	0	0	1	0	0	0	18310	652	23	1	1419	1	ZNF828	13	115090734	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	83111	115090734	79144	14336	22487											
OR11H12	440153	broad.mit.edu	37	chr14	19378050	19378050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatcctaatatcatgactGggcatctctgtgccaaactg	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19378050	T	T	19378050	3	4	9	1	0	0	0	0	1	0	0	0	11021	1348	47	2	459	2	OR11H12	14	19378050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08		19378050	87971490	14337	22488											
OR4M1	441670	broad.mit.edu	37	chr14	20248716	20248716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtactcttccattacagccCctaaaatgctcatagacttc	5	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20248716	A	A	20248716	3	1	9	1	0	0	0	0	1	0	0	0	11169	623	22	2	237	2	OR4M1	14	20248716	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	870666	20248716	87100824	14338	22489											
OR4N2	390429	broad.mit.edu	37	chr14	20295796	20295796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccctctatttctttctGggcaacttggccttcctgga	8	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20295796	T	T	20295796	2	4	9	1	0	0	0	0	0	0	0	1	11171	1335	47	2		2	OR4N2	14	20295796	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47080	20295796	87053744	14339	22490											
OR4K2	390431	broad.mit.edu	37	chr14	20344567	20344567	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtaacagcctcatagtcatCacagttatagtggaccctca	8	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20344567	A	A	20344567	2	1	9	1	0	0	0	0	0	0	0	1	11166	816	29	3		3	OR4K2	14	20344567	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48771	20344567	87004973	14340	22491											
OR4K2	390431	broad.mit.edu	37	chr14	20345011	20345011	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtggatacttatgttctGggcctctttatgatctcaac	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20345011	T	T	20345011	2	4	9	1	0	0	0	0	0	0	0	1	11166	1335	47	2		2	OR4K2	14	20345011	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	444	20345011	87004529	14341	22492											
OR4K2	390431	broad.mit.edu	37	chr14	20345135	20345135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggatcatctaaggccCtttctacttgtacagctcat	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20345135	A	A	20345135	3	1	9	1	0	0	0	0	1	0	0	0	11166	681	24	2	711	2	OR4K2	14	20345135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	124	20345135	87004405	14342	22493											
OR4K1	79544	broad.mit.edu	37	chr14	20404665	20404665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctacactgtttgtactccCttgttgaaccccatcatcta	4	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20404665	A	A	20404665	2	1	9	1	0	0	0	0	0	0	0	1	11161	668	24	2		2	OR4K1	14	20404665	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59530	20404665	86944875	14343	22494											
OR4K15	81127	broad.mit.edu	37	chr14	20443772	20443772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgagacaaatcattctcGggtgacagaatttgtgttgc	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20443772	T	T	20443772	3	4	9	1	0	0	0	0	1	0	0	0	11164	1116	39	1	97	1	OR4K15	14	20443772	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39107	20443772	86905768	14344	22495											
OR4L1	122742	broad.mit.edu	37	chr14	20528234	20528234	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaatggatctctagtgaccGagtttattttactaggattt	8	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20528234	T	T	20528234	4	4	9	1	0	0	0	0	0	1	0	0	11168	1059	37	3	33	3	OR4L1	14	20528234	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84462	20528234	86821306	14345	22496											
OR4K17	390436	broad.mit.edu	37	chr14	20585640	20585640	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctacaggtcatccaagagcGagctgtaggatggaggccat	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20585640	T	T	20585640	2	4	9	1	0	0	0	0	0	0	0	1	11165	1045	37	3		3	OR4K17	14	20585640	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57406	20585640	86763900	14346	22497											
OR4N5	390437	broad.mit.edu	37	chr14	20612131	20612131	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactccttcattgtggttccCaggatgttggtggacttcct	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612131	A	A	20612131	2	1	9	1	0	0	0	0	0	0	0	1	11173	581	21	2		2	OR4N5	14	20612131	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26491	20612131	86737409	14347	22498											
TTC5	91875	broad.mit.edu	37	chr14	20768862	20768862	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggcttccaccagctcGggctccagcttcacagcctt	8	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20768862	T	T	20768862	2	4	9	1	0	0	0	0	0	0	0	1	16837	1103	39	1		1	TTC5	14	20768862	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	156731	20768862	86580678	14348	22499											
PARP2	10038	broad.mit.edu	37	chr14	20815114	20815114	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccattatatttatgagacCatcttcttgataattattga	4	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20815114	A	A	20815114	1	1	9	0	1	0	0	0	0	0	0	0	11555	609	21	2		2	PARP2	14	20815114	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	46252	20815114	86534426	14349	22500											
TEP1	7011	broad.mit.edu	37	chr14	20845794	20845794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatcctaatgccatccgctCgatatccaacagccacccga	6	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20845794	A	A	20845794	3	1	9	1	0	0	0	0	1	0	0	0	15881	884	31	3	2107	3	TEP1	14	20845794	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30680	20845794	86503746	14350	22501											
TEP1	7011	broad.mit.edu	37	chr14	20876107	20876107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttgaaaggtctagtccCttagagaaatgctgagccct	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20876107	A	A	20876107	3	1	9	1	0	0	0	0	1	0	0	0	15881	680	24	2	7607	2	TEP1	14	20876107	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30313	20876107	86473433	14351	22502											
RNASE11	122651	broad.mit.edu	37	chr14	21052470	21052470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttttaactaacaggatcGggttcattaatatctcaatg	6	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21052470	T	T	21052470	3	4	9	1	0	0	0	0	1	0	0	0	13512	1116	39	1	439	1	RNASE11	14	21052470	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	176363	21052470	86297070	14352	22503											
SLC39A2	29986	broad.mit.edu	37	chr14	21467712	21467712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatggttccagattgatgCagccagaggtatagccctac	10	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21467712	A	A	21467712	3	1	9	1	0	0	0	0	1	0	0	0	14732	710	25	3	109	3	SLC39A2	14	21467712	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	415242	21467712	85881828	14353	22504											
FLJ10357	55701	broad.mit.edu	37	chr14	21553005	21553005	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcgccatgtctttctcttcGagcatctcctcctgttcagc	6	15	4	0	rs7342490		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21553005	T	T	21553005	4	4	9	1	0	0	0	0	0	1	0	0	5983	1059	37	3	3953	3	FLJ10357	14	21553005	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85293	21553005	85796535	14354	22505											
RPGRIP1	57096	broad.mit.edu	37	chr14	21792750	21792750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctccctaccctttaacGgataggcagctttctttccc	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21792750	T	T	21792750	1	4	9	0	1	0	0	0	0	0	0	0	13660	1131	39	1		1	RPGRIP1	14	21792750	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	239745	21792750	85556790	14355	22506											
SUPT16H	11198	broad.mit.edu	37	chr14	21820895	21820895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacggttagagccacggccCgaactgtgcacagatgcctt	11	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21820895	A	A	21820895	2	1	9	1	0	0	0	0	0	0	0	1	15514	639	23	1		1	SUPT16H	14	21820895	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28145	21820895	85528645	14356	22507											
MMP14	4323	broad.mit.edu	37	chr14	23312644	23312644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggcgagtagtctacaccCacgcctgctccctcctctgc	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23312644	A	A	23312644	1	1	9	0	1	0	0	0	0	0	0	0	9746	609	21	2		2	MMP14	14	23312644	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1491749	23312644	84036896	14357	22508											
RBM23	55147	broad.mit.edu	37	chr14	23378757	23378757	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgctggtgctgctggtGgtattgctaggataatcctt	13	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23378757	T	T	23378757	2	4	9	1	0	0	0	0	0	0	0	1	13231	1335	47	2		2	RBM23	14	23378757	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66113	23378757	83970783	14358	22509											
PRMT5	10419	broad.mit.edu	37	chr14	23394095	23394095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccagacccacctgaagcGgggactgcagatagtcttca	10	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23394095	T	T	23394095	3	4	9	1	0	0	0	0	1	0	0	0	12645	1116	39	1	1021	1	PRMT5	14	23394095	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15338	23394095	83955445	14359	22510											
ACIN1	22985	broad.mit.edu	37	chr14	23531581	23531581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccacactggtcacaaaaGgaaatatatgccatgaccta	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23531581	T	T	23531581	1	4	9	0	1	0	0	0	0	0	0	0	142	1015	35	2		2	ACIN1	14	23531581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	137486	23531581	83817959	14360	22511											
MYH6	4624	broad.mit.edu	37	chr14	23876244	23876244	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactcaccttcccattctcGgtttcagcaatgaccttgcc	5	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23876244	T	T	23876244	2	4	9	1	0	0	0	0	0	0	0	1	10132	1103	39	1		1	MYH6	14	23876244	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	344663	23876244	83473296	14361	22512											
MYH6	4624	broad.mit.edu	37	chr14	23876313	23876313	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaactcttccttgtcatcGggcacgaagcactcagtgcg	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23876313	T	T	23876313	2	4	9	1	0	0	0	0	0	0	0	1	10132	1103	39	1		1	MYH6	14	23876313	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	69	23876313	83473227	14362	22513											
AP1G2	8906	broad.mit.edu	37	chr14	24035707	24035707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacaacaggcagtcccctGggatttccaaggtccctact	8	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24035707	T	T	24035707	1	4	9	0	1	0	0	0	0	0	0	0	735	1363	47	2		2	AP1G2	14	24035707	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	159394	24035707	83313833	14363	22514											
DHRS4	10901	broad.mit.edu	37	chr14	24464181	24464181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagtttttatcaacatGggtaaatgcacctcccttac	7	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24464181	T	T	24464181	1	4	9	0	1	0	0	0	0	0	0	0	4532	1363	47	2		2	DHRS4	14	24464181	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	428474	24464181	82885359	14364	22515											
PSME1	5720	broad.mit.edu	37	chr14	24607486	24607486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctaagtgagtgaccaccCatgtgcacactgtttttgtt	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24607486	A	A	24607486	1	1	9	0	1	0	0	0	0	0	0	0	12812	609	21	2		2	PSME1	14	24607486	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	143305	24607486	82742054	14365	22516											
PSME1	5720	broad.mit.edu	37	chr14	24607509	24607509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacactgtttttgttttGggagacctccttcttctact	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24607509	T	T	24607509	1	4	9	0	1	0	0	0	0	0	0	0	12812	1363	47	2		2	PSME1	14	24607509	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	24607509	82742031	14366	22517											
RNF31	55072	broad.mit.edu	37	chr14	24627394	24627394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcctccagctggggcccGggcagtccctggaggtgagt	17	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24627394	T	T	24627394	3	4	9	1	0	0	0	0	1	0	0	0	13598	1116	39	1	2955	1	RNF31	14	24627394	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19885	24627394	82722146	14367	22518											
REC8	9985	broad.mit.edu	37	chr14	24647853	24647853	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaccatcagaggccctgcGgagttgttcagaaccccaac	11	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24647853	T	T	24647853	2	4	9	1	0	0	0	0	0	0	0	1	13307	1103	39	1		1	REC8	14	24647853	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20459	24647853	82701687	14368	22519											
IPO4	79711	broad.mit.edu	37	chr14	24652581	24652581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaggatgaggaggggcGggatatgtctgctatgtgca	17	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24652581	T	T	24652581	1	4	9	0	1	0	0	0	0	0	0	0	7865	1131	39	1		1	IPO4	14	24652581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4728	24652581	82696959	14369	22520											
IPO4	79711	broad.mit.edu	37	chr14	24655403	24655403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaacctgagatgggatggGgagacttactttgcttgact	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24655403	T	T	24655403	1	4	9	0	1	0	0	0	0	0	0	0	7865	1247	43	2		2	IPO4	14	24655403	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2822	24655403	82694137	14370	22521											
GMPR2	51292	broad.mit.edu	37	chr14	24702646	24702646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaatatggtacgttttttGgattaatgaaatggtcaatt	8	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24702646	T	T	24702646	1	4	9	0	1	0	0	0	0	0	0	0	6561	1363	47	2		2	GMPR2	14	24702646	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47243	24702646	82646894	14371	22522											
GMPR2	51292	broad.mit.edu	37	chr14	24705366	24705366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgtttctattacagtcGgtacctttttatctttccac	6	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24705366	T	T	24705366	1	4	9	0	1	0	0	0	0	0	0	0	6561	1131	39	1		1	GMPR2	14	24705366	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2720	24705366	82644174	14372	22523											
DHRS1	115817	broad.mit.edu	37	chr14	24761870	24761870	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcaccgcagctttgccCacaccataggggacattgaa	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24761870	A	A	24761870	2	1	9	1	0	0	0	0	0	0	0	1	4526	581	21	2		2	DHRS1	14	24761870	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	56504	24761870	82587670	14373	22524											
C14orf21	161424	broad.mit.edu	37	chr14	24771230	24771230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctttacaggttttacacCgcaaacttccccagttttgc	7	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24771230	A	A	24771230	3	1	9	1	0	0	0	0	1	0	0	0	1782	652	23	1	882	1	C14orf21	14	24771230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9360	24771230	82578310	14374	22525											
NFATC4	4776	broad.mit.edu	37	chr14	24838726	24838726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggactcagaggatgcccCgccatgctgccgtctggcct	12	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24838726	A	A	24838726	3	1	9	1	0	0	0	0	1	0	0	0	10460	652	23	1	321	1	NFATC4	14	24838726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67496	24838726	82510814	14375	22526											
CBLN3	643866	broad.mit.edu	37	chr14	24897465	24897465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccaccctcctgagccGgggatgggggccagtgctga	14	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24897465	T	T	24897465	1	4	9	0	1	0	0	0	0	0	0	0	2732	1131	39	1		1	CBLN3	14	24897465	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	58739	24897465	82452075	14376	22527											
CMA1	1215	broad.mit.edu	37	chr14	24976701	24976701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcttgcattctgtgccccCgatgatctcccctggaacag	10	14	2	1	rs140753864		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24976701	A	A	24976701	3	1	9	1	0	0	0	0	1	0	0	0	3606	652	23	1	689	1	CMA1	14	24976701	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79236	24976701	82372839	14377	22528											
FOXG1	2290	broad.mit.edu	37	chr14	29237231	29237231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcgccactacgacgaccCgggcaagggcaactactgga	13	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237231	A	A	29237231	3	1	9	1	0	0	0	0	1	0	0	0	6067	652	23	1	748	1	FOXG1	14	29237231	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4260530	29237231	78112309	14378	22529											
PRKD1	5587	broad.mit.edu	37	chr14	30107739	30107739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagttgtttggtactttcGgtgcacaacgtttatggcag	13	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30107739	T	T	30107739	3	4	9	1	0	0	0	0	1	0	0	0	12624	1116	39	1	1849	1	PRKD1	14	30107739	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	870508	30107739	77241801	14379	22530											
G2E3	55632	broad.mit.edu	37	chr14	31066643	31066643	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggttcaagcaataaatgcGggagtgtttttctttaggtg	12	4	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31066643	T	T	31066643	2	4	9	1	0	0	0	0	0	0	0	1	6200	1103	39	1		1	G2E3	14	31066643	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	958904	31066643	76282897	14380	22531											
HECTD1	25831	broad.mit.edu	37	chr14	31604225	31604225	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatatgctgatggtatcaccCagagacccagatctatggca	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31604225	G	G	31604225	3	3	9	1	0	0	0	0	1	0	0	0	7106	595	21	4	4489	4	HECTD1	14	31604225	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	537582	31604225	75745315	14381	22532											
HECTD1	25831	broad.mit.edu	37	chr14	31626367	31626367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagttttgaaaaagaaacGgacctcttgatccaggacag	10	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31626367	T	T	31626367	1	4	9	0	1	0	0	0	0	0	0	0	7106	1131	39	1		1	HECTD1	14	31626367	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22142	31626367	75723173	14382	22533											
HECTD1	25831	broad.mit.edu	37	chr14	31637572	31637572	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaccttttcaagtatatGggtgccatttccggatctcc	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31637572	T	T	31637572	2	4	9	1	0	0	0	0	0	0	0	1	7106	1335	47	2		2	HECTD1	14	31637572	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11205	31637572	75711968	14383	22534											
HEATR5A	25938	broad.mit.edu	37	chr14	31778285	31778285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcagcaacaacaaaaccCgtgcttgtaagccacaatgc	9	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31778285	A	A	31778285	2	1	9	1	0	0	0	0	0	0	0	1	7098	639	23	1		1	HEATR5A	14	31778285	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	140713	31778285	75571255	14384	22535											
HEATR5A	25938	broad.mit.edu	37	chr14	31855749	31855749	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatctgtggaaccaagccGggtttccaaattaccatcac	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31855749	T	T	31855749	2	4	9	1	0	0	0	0	0	0	0	1	7098	1115	39	1		1	HEATR5A	14	31855749	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	77464	31855749	75493791	14385	22536											
SRP54	6729	broad.mit.edu	37	chr14	35478011	35478011	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactaaaacagaatgctacCaaagcaagaattccatttta	4	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35478011	A	A	35478011	2	1	9	1	0	0	0	0	0	0	0	1	15273	581	21	2		2	SRP54	14	35478011	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3622262	35478011	71871529	14386	22537											
FAM177A1	283635	broad.mit.edu	37	chr14	35546399	35546399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatggttttacatgcttcGggctgctacatcaactctct	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35546399	T	T	35546399	3	4	9	1	0	0	0	0	1	0	0	0	5546	1116	39	1	393	1	FAM177A1	14	35546399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68388	35546399	71803141	14387	22538											
PSMA6	5687	broad.mit.edu	37	chr14	35761736	35761736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacattaccattttttcaccCgagggtcggctctaccaagt	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35761736	A	A	35761736	2	1	9	1	0	0	0	0	0	0	0	1	12777	639	23	1		1	PSMA6	14	35761736	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	215337	35761736	71587804	14388	22539											
PSMA6	5687	broad.mit.edu	37	chr14	35786520	35786520	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagagagactaaacattgtCgttagtttaccagatccgtg	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35786520	A	A	35786520	1	1	9	0	1	0	0	0	0	0	0	0	12777	899	31	3		3	PSMA6	14	35786520	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	24784	35786520	71563020	14389	22540											
MIA2	117153	broad.mit.edu	37	chr14	39722173	39722173	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attatatttctcagaaaggtAagaaacaggttatttattct	6	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39722173	C	C	39722173	1	2	9	0	1	0	0	0	0	0	0	0	9657	377	13	5		5	MIA2	14	39722173	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	3935653	39722173	67627367	14390	22541											
FAM179B	23116	broad.mit.edu	37	chr14	45432408	45432408	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgataatatccctagccCgaaagcttggtgatcaggag	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45432408	A	A	45432408	2	1	9	1	0	0	0	0	0	0	0	1	5551	644	23	1		1	FAM179B	14	45432408	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5710235	45432408	61917132	14391	22542											
FAM179B	23116	broad.mit.edu	37	chr14	45432923	45432923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaggtacagcagttcttGggaccagttatagcagcttc	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45432923	T	T	45432923	3	4	9	1	0	0	0	0	1	0	0	0	5551	1339	47	2	1301	2	FAM179B	14	45432923	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	515	45432923	61916617	14392	22543											
FKBP3	2287	broad.mit.edu	37	chr14	45590718	45590718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagtatcaaaaacagtccCatcttgtagtgttcctgtat	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45590718	A	A	45590718	3	1	9	1	0	0	0	0	1	0	0	0	5966	594	21	2	266	2	FKBP3	14	45590718	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	157795	45590718	61758822	14393	22544											
FANCM	57697	broad.mit.edu	37	chr14	45658454	45658454	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttaaaggatacaatttcCgaagtctcagacttcaaacc	5	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45658454	A	A	45658454	2	1	9	1	0	0	0	0	0	0	0	1	5728	639	23	1		1	FANCM	14	45658454	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	67736	45658454	61691086	14394	22545											
C14orf106	55320	broad.mit.edu	37	chr14	45700443	45700443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgatttccttatgtcacGgacagatcttccagttttct	6	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45700443	T	T	45700443	3	4	9	1	0	0	0	0	1	0	0	0	1751	1116	39	1	1943	1	C14orf106	14	45700443	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	41989	45700443	61649097	14395	22546											
SDCCAG1	9147	broad.mit.edu	37	chr14	50266220	50266220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggctgacaaatgtctcCggctctgtgatttactgtca	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50266220	A	A	50266220	3	1	9	1	0	0	0	0	1	0	0	0	14070	652	23	1	828	1	SDCCAG1	14	50266220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4565777	50266220	57083320	14396	22547											
NIN	51199	broad.mit.edu	37	chr14	51190421	51190421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagaaacatcttgactcCatttctgtaactcttcttaa	3	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51190421	A	A	51190421	1	1	9	0	1	0	0	0	0	0	0	0	10512	609	21	2		2	NIN	14	51190421	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	924201	51190421	56159119	14397	22548											
ABHD12B	145447	broad.mit.edu	37	chr14	51347344	51347344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattgagagcatttcagccCcatgggggaatgaaggacag	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51347344	A	A	51347344	1	1	9	0	1	0	0	0	0	0	0	0	77	638	22	2		2	ABHD12B	14	51347344	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	156923	51347344	56002196	14398	22549											
ABHD12B	145447	broad.mit.edu	37	chr14	51348420	51348420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattttcctcaggccctcCgcgtggttgttttttgagag	11	9	1	2	rs144483430	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51348420	A	A	51348420	1	1	9	0	1	0	0	0	0	0	0	0	77	667	23	1		1	ABHD12B	14	51348420	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1076	51348420	56001120	14399	22550											
TRIM9	114088	broad.mit.edu	37	chr14	51475722	51475722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgttacattagccaaaGgggtactgatcctgcttcaa	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51475722	T	T	51475722	1	4	9	0	1	0	0	0	0	0	0	0	16674	1015	35	2		2	TRIM9	14	51475722	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	127302	51475722	55873818	14400	22551											
NID2	22795	broad.mit.edu	37	chr14	52477707	52477707	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttatccaggacactgtcCgtccagtacattgttctgcg	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52477707	A	A	52477707	2	1	9	1	0	0	0	0	0	0	0	1	10510	639	23	1		1	NID2	14	52477707	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1001985	52477707	54871833	14401	22552											
TXNDC16	57544	broad.mit.edu	37	chr14	52981653	52981653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaattggtatgtagtccCatacacaaaagcggcttcca	8	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52981653	A	A	52981653	3	1	9	1	0	0	0	0	1	0	0	0	16921	594	21	2	1983	2	TXNDC16	14	52981653	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	503946	52981653	54367887	14402	22553											
SAMD4A	23034	broad.mit.edu	37	chr14	55243070	55243070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccaaattcttgctggcGgctctgctctccaccccagt	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55243070	T	T	55243070	1	4	9	0	1	0	0	0	0	0	0	0	13932	1131	39	1		1	SAMD4A	14	55243070	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2261417	55243070	52106470	14403	22554											
KIAA0831	22863	broad.mit.edu	37	chr14	55848788	55848788	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgctaatgctggtgtctcCgttgtgatcgtcacagaccc	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55848788	A	A	55848788	4	1	9	1	0	0	0	0	0	1	0	0	8265	661	23	1	729	1	KIAA0831	14	55848788	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	605718	55848788	51500752	14404	22555											
KIAA0831	22863	broad.mit.edu	37	chr14	55848835	55848835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaggtaagttgtcctcCgggcttcagcaagcttgctc	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55848835	A	A	55848835	3	1	9	1	0	0	0	0	1	0	0	0	8265	652	23	1	776	1	KIAA0831	14	55848835	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	55848835	51500705	14405	22556											
KTN1	3895	broad.mit.edu	37	chr14	56117005	56117005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatatcttggtgggtcttGgtgatttctaatcaaattat	8	4	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56117005	T	T	56117005	1	4	9	0	1	0	0	0	0	0	0	0	8657	1363	47	2		2	KTN1	14	56117005	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	268170	56117005	51232535	14406	22557											
PELI2	57161	broad.mit.edu	37	chr14	56757094	56757094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccgaggagtcccagcccGgggtctggcgcgagatctct	14	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56757094	T	T	56757094	3	4	9	1	0	0	0	0	1	0	0	0	11816	1116	39	1	634	1	PELI2	14	56757094	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	640089	56757094	50592446	14407	22558											
EXOC5	10640	broad.mit.edu	37	chr14	57675341	57675341	+	Silent	SNP	G	T	T													tcaatctcagctgaagtgtcGagcaaggcgggcagatctat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57675341	T	T	57675341	2	4	9	1	0	0	0	0	0	0	0	1	5349	1066	37	3		3	EXOC5	14	57675341	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	918247	57675341	49674199	14408	22559	151	2									
EXOC5	10640	broad.mit.edu	37	chr14	57675350	57675350	+	Missense_Mutation	SNP	G	T	T													gctgaagtgtcgagcaaggcGggcagatctataatcagcac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57675350	T	T	57675350	3	4	9	1	0	0	0	0	1	0	0	0	5349	1116	39	1	26	1	EXOC5	14	57675350	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	57675350	49674190	14409	22560	151	2									
C14orf37	145407	broad.mit.edu	37	chr14	58471835	58471835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgctgtagagggctccCaagatgaacaaggctccagc	11	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58471835	A	A	58471835	3	1	9	1	0	0	0	0	1	0	0	0	1784	593	21	2	145	2	C14orf37	14	58471835	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	796485	58471835	48877705	14410	22561											
ARID4A	5926	broad.mit.edu	37	chr14	58832862	58832862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcctgcaagaatatcccCgcacatcaaagatggagaga	8	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58832862	A	A	58832862	3	1	9	1	0	0	0	0	1	0	0	0	921	652	23	1	3519	1	ARID4A	14	58832862	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	361027	58832862	48516678	14411	22562											
DAAM1	23002	broad.mit.edu	37	chr14	59830500	59830500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcagaagctaaagacctGgtaagtttcccccttgtgca	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59830500	T	T	59830500	2	4	9	1	0	0	0	0	0	0	0	1	4248	1362	47	2		2	DAAM1	14	59830500	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	997638	59830500	47519040	14412	22563											
C14orf39	317761	broad.mit.edu	37	chr14	60903649	60903649	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgaattttgaccctgtcCaaatgaaaatggaaaactaa	6	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60903649	A	A	60903649	4	1	9	1	0	0	0	0	0	1	0	0	1785	603	21	2	89	2	C14orf39	14	60903649	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1073149	60903649	46445891	14413	22564											
MNAT1	4331	broad.mit.edu	37	chr14	61263069	61263069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaaggaggttgagatcaGgaaaaaagtgctaaagatgt	13	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61263069	T	T	61263069	3	4	9	1	0	0	0	0	1	0	0	0	9768	1000	35	2	230	2	MNAT1	14	61263069	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	359420	61263069	46086471	14414	22565											
PRKCH	5583	broad.mit.edu	37	chr14	61952271	61952271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggggtgacttgatgttcCacattcagaagtctcgtcgt	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61952271	A	A	61952271	3	1	9	1	0	0	0	0	1	0	0	0	12619	594	21	2	1368	2	PRKCH	14	61952271	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	689202	61952271	45397269	14415	22566											
SYT16	83851	broad.mit.edu	37	chr14	62536422	62536422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccggtcccagagtttcCgttcagtgacatctgagaaa	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62536422	A	A	62536422	3	1	9	1	0	0	0	0	1	0	0	0	15591	652	23	1	631	1	SYT16	14	62536422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	584151	62536422	44813118	14416	22567											
SYT16	83851	broad.mit.edu	37	chr14	62541901	62541901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgagaatctctcctacgGtgaagatgaccacatccctg	8	12	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62541901	T	T	62541901	3	4	9	1	0	0	0	0	1	0	0	0	15591	1261	44	3	795	3	SYT16	14	62541901	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5479	62541901	44807639	14417	22568											
KCNH5	27133	broad.mit.edu	37	chr14	63453878	63453878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcggctatttgtcaaagccCgtgtcaatcgggcaaatttc	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63453878	A	A	63453878	3	1	9	1	0	0	0	0	1	0	0	0	8105	652	23	1	2567	1	KCNH5	14	63453878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	911977	63453878	43895662	14418	22569											
RHOJ	57381	broad.mit.edu	37	chr14	63749872	63749872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacccaaaaaccttggccCgtttgctgtatatgaaagag	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63749872	A	A	63749872	3	1	9	1	0	0	0	0	1	0	0	0	13450	652	23	1	450	1	RHOJ	14	63749872	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	295994	63749872	43599668	14419	22570											
RHOJ	57381	broad.mit.edu	37	chr14	63749925	63749925	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacgagcatggtgtgaagctCgcaaaagcggtacagtcaga	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63749925	A	A	63749925	2	1	9	1	0	0	0	0	0	0	0	1	13450	871	31	3		3	RHOJ	14	63749925	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	63749925	43599615	14420	22571											
SYNE2	23224	broad.mit.edu	37	chr14	64434497	64434497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtcctgtcaataaaacGggatctggatgagctggaca	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64434497	T	T	64434497	3	4	9	1	0	0	0	0	1	0	0	0	15565	1116	39	1	1099	1	SYNE2	14	64434497	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	684572	64434497	42915043	14421	22572											
SYNE2	23224	broad.mit.edu	37	chr14	64518607	64518607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaagtctccagaagaacGggcagggaaccaaagcatga	13	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64518607	T	T	64518607	3	4	9	1	0	0	0	0	1	0	0	0	15565	1116	39	1	8162	1	SYNE2	14	64518607	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84110	64518607	42830933	14422	22573											
SYNE2	23224	broad.mit.edu	37	chr14	64632155	64632155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatatttgtcttttctaaGggcttagactcaccataagg	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64632155	T	T	64632155	1	4	9	0	1	0	0	0	0	0	0	0	15565	1015	35	2		2	SYNE2	14	64632155	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	113548	64632155	42717385	14423	22574											
ESR2	2100	broad.mit.edu	37	chr14	64694333	64694333	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgagaggccttttctgccCttaagtagagatgcgggaca	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64694333	A	A	64694333	1	1	9	0	1	0	0	0	0	0	0	0	5299	695	24	2		2	ESR2	14	64694333	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	62178	64694333	42655207	14424	22575											
AKAP5	9495	broad.mit.edu	37	chr14	64935615	64935615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatatacaaacacagacccCattgaatgatcaggcaacaa	7	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64935615	A	A	64935615	3	1	9	1	0	0	0	0	1	0	0	0	454	594	21	2	505	2	AKAP5	14	64935615	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	241282	64935615	42413925	14425	22576											
AKAP5	9495	broad.mit.edu	37	chr14	64935787	64935787	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcattctgctattcaaacGggaactctaatccttgaaga	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64935787	T	T	64935787	2	4	9	1	0	0	0	0	0	0	0	1	454	1103	39	1		1	AKAP5	14	64935787	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	172	64935787	42413753	14426	22577											
PLEKHG3	26030	broad.mit.edu	37	chr14	65198343	65198343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcttgtctgcttcttgGggctccagcaccacccttct	7	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65198343	T	T	65198343	1	4	9	0	1	0	0	0	0	0	0	0	12165	1247	43	2		2	PLEKHG3	14	65198343	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	262556	65198343	42151197	14427	22578											
SPTB	6710	broad.mit.edu	37	chr14	65216670	65216670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaatcaagccatcaaccCgagctttcaaaggccaggaa	8	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65216670	A	A	65216670	1	1	9	0	1	0	0	0	0	0	0	0	15236	667	23	1		1	SPTB	14	65216670	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18327	65216670	42132870	14428	22579											
SPTB	6710	broad.mit.edu	37	chr14	65239358	65239358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacccggtggaaggactcGgccgtgctggcgtccagccc	15	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65239358	T	T	65239358	2	4	9	1	0	0	0	0	0	0	0	1	15236	1103	39	1		1	SPTB	14	65239358	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22688	65239358	42110182	14429	22580											
SPTB	6710	broad.mit.edu	37	chr14	65268088	65268088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgccgggcattggagtcCttcagcttatcaaagtcgat	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65268088	A	A	65268088	3	1	9	1	0	0	0	0	1	0	0	0	15236	680	24	2	6497	2	SPTB	14	65268088	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28730	65268088	42081452	14430	22581											
GPHN	10243	broad.mit.edu	37	chr14	67589024	67589024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaagattcgagacagcaatCgttcaactcttctagcaaca	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67589024	T	T	67589024	3	4	9	1	0	0	0	0	1	0	0	0	6675	884	31	4	1744	4	GPHN	14	67589024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2320936	67589024	39760516	14431	22582											
FAM71D	161142	broad.mit.edu	37	chr14	67671503	67671503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacatcacaggctccatGgatgtgacggatgtcaccac	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67671503	T	T	67671503	3	4	9	1	0	0	0	0	1	0	0	0	5661	1348	47	2	619	2	FAM71D	14	67671503	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82479	67671503	39678037	14432	22583											
PLEKHH1	57475	broad.mit.edu	37	chr14	68052797	68052797	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgagaagttgatcttcCggatggctgctcccaaggta	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68052797	A	A	68052797	2	1	9	1	0	0	0	0	0	0	0	1	12171	643	23	1		1	PLEKHH1	14	68052797	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	381294	68052797	39296743	14433	22584											
ZFYVE26	23503	broad.mit.edu	37	chr14	68217856	68217856	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagagggagaagagtccCgcagtctgggagccagggcc	18	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68217856	G	G	68217856	1	3	9	0	1	0	0	0	0	0	0	0	17794	667	23	4		4	ZFYVE26	14	68217856	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	165059	68217856	39131684	14434	22585											
ZFYVE26	23503	broad.mit.edu	37	chr14	68229060	68229060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcagcagtgaggttccCggctttgaggcaggccatgc	15	12	0	2	rs140540720	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68229060	A	A	68229060	3	1	9	1	0	0	0	0	1	0	0	0	17794	652	23	1	1426	1	ZFYVE26	14	68229060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11204	68229060	39120480	14435	22586											
ZFYVE26	23503	broad.mit.edu	37	chr14	68274528	68274528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactgcctcaggagatccCagagcacagagacagcttcg	12	12	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68274528	A	A	68274528	3	1	9	1	0	0	0	0	1	0	0	0	17794	595	21	2	7298	2	ZFYVE26	14	68274528	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45468	68274528	39075012	14436	22587											
ZFP36L1	677	broad.mit.edu	37	chr14	69256916	69256916	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaggggcggcacagctcCgtcttgtagcggctggagtt	15	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69256916	A	A	69256916	2	1	9	1	0	0	0	0	0	0	0	1	17772	639	23	1		1	ZFP36L1	14	69256916	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	982388	69256916	38092624	14437	22588											
DCAF5	8816	broad.mit.edu	37	chr14	69522262	69522262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgggtatagaggcagcGggaatcgtcctcaatccgac	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69522262	T	T	69522262	3	4	9	1	0	0	0	0	1	0	0	0	4306	1116	39	1	1691	1	DCAF5	14	69522262	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	265346	69522262	37827278	14438	22589											
EXD2	55218	broad.mit.edu	37	chr14	69695767	69695767	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagggggtgcctggacctcCgatacctagccatgcggcag	14	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69695767	A	A	69695767	2	1	9	1	0	0	0	0	0	0	0	1	5340	644	23	1		1	EXD2	14	69695767	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	173505	69695767	37653773	14439	22590											
GALNTL1	57452	broad.mit.edu	37	chr14	69813781	69813781	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtgaaggaagcactcccCggcatcattaagcagggggt	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69813781	A	A	69813781	2	1	9	1	0	0	0	0	0	0	0	1	6283	639	23	1		1	GALNTL1	14	69813781	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	118014	69813781	37535759	14440	22591											
SLC39A9	55334	broad.mit.edu	37	chr14	69925095	69925095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagcagtaaagaagccCtttcagaggtgaacgccacg	11	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69925095	A	A	69925095	3	1	9	1	0	0	0	0	1	0	0	0	14739	681	24	2	735	2	SLC39A9	14	69925095	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111314	69925095	37424445	14441	22592											
SMOC1	64093	broad.mit.edu	37	chr14	70442453	70442453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgccatacttacactGggtactgctggtgtgtcacc	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70442453	T	T	70442453	3	4	9	1	0	0	0	0	1	0	0	0	14915	1348	47	2	414	2	SMOC1	14	70442453	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	517358	70442453	36907087	14442	22593											
SLC8A3	6547	broad.mit.edu	37	chr14	70633596	70633596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taactgtggccacacaagggGaggctaggacagcccgaggc	15	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70633596	T	T	70633596	3	4	9	1	0	0	0	0	1	0	0	0	14822	1174	41	3	1378	3	SLC8A3	14	70633596	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	191143	70633596	36715944	14443	22594											
MAP3K9	4293	broad.mit.edu	37	chr14	71199435	71199435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgtttgaagcgctctactCggacattgaccagggggttg	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71199435	A	A	71199435	3	1	9	1	0	0	0	0	1	0	0	0	9349	884	31	3	671	3	MAP3K9	14	71199435	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	565839	71199435	36150105	14444	22595											
PCNX	22990	broad.mit.edu	37	chr14	71522261	71522261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaataccagattggcttccCagcttgatagaaatccaggt	8	10	0	3	rs149428100		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71522261	A	A	71522261	3	1	9	1	0	0	0	0	1	0	0	0	11685	595	21	2	4716	2	PCNX	14	71522261	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	322826	71522261	35827279	14445	22596											
PCNX	22990	broad.mit.edu	37	chr14	71540280	71540280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtacctactgtcaacaacGggaagtggaggccattactg	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71540280	T	T	71540280	3	4	9	1	0	0	0	0	1	0	0	0	11685	1116	39	1	4977	1	PCNX	14	71540280	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18019	71540280	35809260	14446	22597											
SIPA1L1	26037	broad.mit.edu	37	chr14	72054518	72054518	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagccattctccaaaaGggaagtgcacatttaaaaca	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72054518	T	T	72054518	1	4	9	1	0	0	0	0	0	0	0	0	14442	1015	35	2		2	SIPA1L1	14	72054518	Translation_Start_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	514238	72054518	35295022	14447	22598											
DPF3	8110	broad.mit.edu	37	chr14	73159819	73159819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtggttgggtggggacCgagtctcctggtcttgagct	16	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73159819	A	A	73159819	3	1	9	1	0	0	0	0	1	0	0	0	4758	652	23	1	378	1	DPF3	14	73159819	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1105301	73159819	34189721	14448	22599											
DCAF4	26094	broad.mit.edu	37	chr14	73421106	73421106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgccaggcttgtctcggcGggtcctgttgaccaacgtgg	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73421106	T	T	73421106	3	4	9	1	0	0	0	0	1	0	0	0	4303	1116	39	1	961	1	DCAF4	14	73421106	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	261287	73421106	33928434	14449	22600											
DCAF4	26094	broad.mit.edu	37	chr14	73425481	73425481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggctgctcatggctgtcGggcaggacctttactgttac	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73425481	T	T	73425481	3	4	9	1	0	0	0	0	1	0	0	0	4303	1116	39	1	1509	1	DCAF4	14	73425481	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4375	73425481	33924059	14450	22601											
ZFYVE1	53349	broad.mit.edu	37	chr14	73445586	73445586	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttgcaggtatacactcGgttgtcatactggtgggagt	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73445586	T	T	73445586	2	4	9	1	0	0	0	0	0	0	0	1	17789	1124	39	1		1	ZFYVE1	14	73445586	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20105	73445586	33903954	14451	22602											
ZFYVE1	53349	broad.mit.edu	37	chr14	73490970	73490970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgccctctgcctaacacCtggtaaatgcccactgagac	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73490970	A	A	73490970	3	1	9	1	0	0	0	0	1	0	0	0	17789	681	24	2	2130	2	ZFYVE1	14	73490970	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45384	73490970	33858570	14452	22603											
ACOT2	10965	broad.mit.edu	37	chr14	74036038	74036038	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtccttcgagcgtccCggctgtaccaatggagcctg	12	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74036038	A	A	74036038	2	1	9	1	0	0	0	0	0	0	0	1	152	643	23	1		1	ACOT2	14	74036038	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	545068	74036038	33313502	14453	22604											
ACOT2	10965	broad.mit.edu	37	chr14	74040291	74040291	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactacttgctcagtcatccCgaggttagttcttctttcag	7	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74040291	A	A	74040291	2	1	9	1	0	0	0	0	0	0	0	1	152	639	23	1		1	ACOT2	14	74040291	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4253	74040291	33309249	14454	22605											
FAM161B	145483	broad.mit.edu	37	chr14	74409328	74409328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggggctgtgggttagccCggttactagaggaggcgata	18	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74409328	A	A	74409328	3	1	9	1	0	0	0	0	1	0	0	0	5519	652	23	1	951	1	FAM161B	14	74409328	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	369037	74409328	32940212	14455	22606											
FAM161B	145483	broad.mit.edu	37	chr14	74410987	74410987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgactaaatccctatggtGggattggttccccgaggcag	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74410987	T	T	74410987	1	4	9	0	1	0	0	0	0	0	0	0	5519	1363	47	2		2	FAM161B	14	74410987	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1659	74410987	32938553	14456	22607											
ABCD4	5826	broad.mit.edu	37	chr14	74753295	74753295	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctggcagaggaggccactCggttctctctgctactgcta	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74753295	A	A	74753295	1	1	9	0	1	0	0	0	0	0	0	0	63	899	31	3		3	ABCD4	14	74753295	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	342308	74753295	32596245	14457	22608											
ABCD4	5826	broad.mit.edu	37	chr14	74766251	74766251	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagagggaaagatcttacCgtggagttcagaacaatgag	14	5	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74766251	A	A	74766251	2	1	9	1	0	0	0	0	0	0	0	1	63	666	23	1		1	ABCD4	14	74766251	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12956	74766251	32583289	14458	22609											
TMEM90A	646658	broad.mit.edu	37	chr14	74876062	74876062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtcatcctcctggtccCgcagctcctcttgtacccca	7	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74876062	A	A	74876062	3	1	9	1	0	0	0	0	1	0	0	0	16341	652	23	1	342	1	TMEM90A	14	74876062	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109811	74876062	32473478	14459	22610											
NPC2	10577	broad.mit.edu	37	chr14	74947415	74947415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagacttacgatctgtactGggatttcccagcagaagaga	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74947415	T	T	74947415	3	4	9	1	0	0	0	0	1	0	0	0	10667	1348	47	2	32	2	NPC2	14	74947415	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71353	74947415	32402125	14460	22611											
RPS6KL1	83694	broad.mit.edu	37	chr14	75388138	75388138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcactcccagagccaccCtgttgcgaatctgctccagg	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75388138	A	A	75388138	3	1	9	1	0	0	0	0	1	0	0	0	13770	681	24	2	1558	2	RPS6KL1	14	75388138	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	440723	75388138	31961402	14461	22612											
MLH3	27030	broad.mit.edu	37	chr14	75498846	75498846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagacagtaattttttcCgaccagagccttgtgcctgt	9	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75498846	A	A	75498846	3	1	9	1	0	0	0	0	1	0	0	0	9711	652	23	1	633	1	MLH3	14	75498846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110708	75498846	31850694	14462	22613											
C14orf1	11161	broad.mit.edu	37	chr14	76117951	76117951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttctagataccggagccCgaccagcatacccaggatgg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76117951	A	A	76117951	3	1	9	1	0	0	0	0	1	0	0	0	1746	652	23	1	56	1	C14orf1	14	76117951	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	619105	76117951	31231589	14463	22614											
TTLL5	23093	broad.mit.edu	37	chr14	76201565	76201565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaagatcctgcccagcGggcatcaactcggccaattt	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76201565	T	T	76201565	3	4	9	1	0	0	0	0	1	0	0	0	16856	1116	39	1	1268	1	TTLL5	14	76201565	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83614	76201565	31147975	14464	22615											
TGFB3	7043	broad.mit.edu	37	chr14	76447106	76447106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgctcaagatctgtcccCtaatggcttccaccctcttc	6	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76447106	A	A	76447106	3	1	9	1	0	0	0	0	1	0	0	0	15942	681	24	2	1135	2	TGFB3	14	76447106	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	245541	76447106	30902434	14465	22616											
C14orf179	112752	broad.mit.edu	37	chr14	76548974	76548974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagcatccagataaagcGggtgatgacctaccgtgacc	10	12	1	4	rs138684775		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76548974	T	T	76548974	3	4	9	1	0	0	0	0	1	0	0	0	1775	1116	39	1	508	1	C14orf179	14	76548974	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101868	76548974	30800566	14466	22617											
C14orf179	112752	broad.mit.edu	37	chr14	76548988	76548988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagcgggtgatgacctacCgtgacctggacaatgacctc	11	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76548988	A	A	76548988	3	1	9	1	0	0	0	0	1	0	0	0	1775	652	23	1	522	1	C14orf179	14	76548988	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	76548988	30800552	14467	22618											
ESRRB	2103	broad.mit.edu	37	chr14	76928910	76928910	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattgagtacagctgcccGgccaccaacgagtgcgagat	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76928910	T	T	76928910	2	4	9	1	0	0	0	0	0	0	0	1	5303	1103	39	1		1	ESRRB	14	76928910	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	379922	76928910	30420630	14468	22619											
TMEM63C	57156	broad.mit.edu	37	chr14	77715134	77715134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccatagacttccagtttGggcgtgagtatgcgtggatg	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77715134	T	T	77715134	3	4	9	1	0	0	0	0	1	0	0	0	16315	1348	47	2	1859	2	TMEM63C	14	77715134	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	786224	77715134	29634406	14469	22620											
POMT2	29954	broad.mit.edu	37	chr14	77751965	77751965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagaaatcatttgagtccCctgttccattctgccataaa	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77751965	A	A	77751965	3	1	9	1	0	0	0	0	1	0	0	0	12341	623	22	2	945	2	POMT2	14	77751965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36831	77751965	29597575	14470	22621											
C14orf148	122945	broad.mit.edu	37	chr14	77889141	77889141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcctcgatcatcagtcccCgagaacggccctgcaaatac	8	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77889141	A	A	77889141	3	1	9	1	0	0	0	0	1	0	0	0	1764	652	23	1	1080	1	C14orf148	14	77889141	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	137176	77889141	29460399	14471	22622											
ALKBH1	8846	broad.mit.edu	37	chr14	78146285	78146285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttctccagtaaacttcGgggtctccgtttagtcgctt	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78146285	T	T	78146285	2	4	9	1	0	0	0	0	0	0	0	1	526	1124	39	1		1	ALKBH1	14	78146285	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	257144	78146285	29203255	14472	22623											
ALKBH1	8846	broad.mit.edu	37	chr14	78170752	78170752	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcttgccacttgctgacGggctgaagacctgctctata	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78170752	T	T	78170752	2	4	9	1	0	0	0	0	0	0	0	1	526	1103	39	1		1	ALKBH1	14	78170752	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24467	78170752	29178788	14473	22624											
SNW1	22938	broad.mit.edu	37	chr14	78184595	78184595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcggcctctctgtctacGgtctgaaccagaaaactcct	7	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78184595	T	T	78184595	3	4	9	1	0	0	0	0	1	0	0	0	14993	1116	39	1	167	1	SNW1	14	78184595	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13843	78184595	29164945	14474	22625											
SNW1	22938	broad.mit.edu	37	chr14	78198832	78198832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attataacaaaccaaccttcCgatcagcaatgtagagggct	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78198832	A	A	78198832	3	1	9	1	0	0	0	0	1	0	0	0	14993	652	23	1	747	1	SNW1	14	78198832	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14237	78198832	29150708	14475	22626											
NRXN3	9369	broad.mit.edu	37	chr14	78710243	78710243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatggatgcatatctttaGctgcatgttagatcactggg	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78710243	T	T	78710243	1	4	9	0	1	0	0	0	0	0	0	0	10762	986	34	3		3	NRXN3	14	78710243	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	511411	78710243	28639297	14476	22627											
NRXN3	9369	broad.mit.edu	37	chr14	79746623	79746623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccatctgtagtggtccCgtgcgttgaccatgcacctg	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79746623	A	A	79746623	1	1	9	0	1	0	0	0	0	0	0	0	10762	667	23	1		1	NRXN3	14	79746623	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1036380	79746623	27602917	14477	22628											
GTF2A1	2957	broad.mit.edu	37	chr14	81659023	81659023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagcaggctgggcctgcGgttgctgctggccagttgca	16	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81659023	T	T	81659023	3	4	9	1	0	0	0	0	1	0	0	0	6917	1116	39	1	369	1	GTF2A1	14	81659023	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1912400	81659023	25690517	14478	22629											
GTF2A1	2957	broad.mit.edu	37	chr14	81659057	81659057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgcagttatctgtgcttGggctggtgtaggtgctgcca	15	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81659057	T	T	81659057	3	4	9	1	0	0	0	0	1	0	0	0	6917	1357	47	2	403	2	GTF2A1	14	81659057	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	81659057	25690483	14479	22630											
STON2	85439	broad.mit.edu	37	chr14	81744241	81744241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctccagcttgaactcacGgaatggtttttctaggccct	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81744241	T	T	81744241	3	4	9	1	0	0	0	0	1	0	0	0	15436	1116	39	1	1309	1	STON2	14	81744241	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85184	81744241	25605299	14480	22631											
STON2	85439	broad.mit.edu	37	chr14	81744602	81744602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctctttggcttttgccCgtggtactggaaatggaact	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81744602	A	A	81744602	2	1	9	1	0	0	0	0	0	0	0	1	15436	639	23	1		1	STON2	14	81744602	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	361	81744602	25604938	14481	22632											
FLRT2	23768	broad.mit.edu	37	chr14	86088043	86088043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgcctcttgggatccCggagggcgtaactgtactct	12	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86088043	A	A	86088043	3	1	9	1	0	0	0	0	1	0	0	0	5997	652	23	1	187	1	FLRT2	14	86088043	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4343441	86088043	21261497	14482	22633											
FLRT2	23768	broad.mit.edu	37	chr14	86089314	86089314	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggttaacttagagcccCgatccacctatcggatttgt	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86089314	A	A	86089314	2	1	9	1	0	0	0	0	0	0	0	1	5997	644	23	1		1	FLRT2	14	86089314	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1271	86089314	21260226	14483	22634											
GALC	2581	broad.mit.edu	37	chr14	88411856	88411856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacctgacaatattacaaGggtatttcagccagatccac	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88411856	T	T	88411856	1	4	9	0	1	0	0	0	0	0	0	0	6263	1015	35	2		2	GALC	14	88411856	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2322542	88411856	18937684	14484	22635											
KCNK10	54207	broad.mit.edu	37	chr14	88654475	88654475	+	Intron	DEL	T	-	-													tgaaaacaaccaaatgttacTttaaccatgatctagcatat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88654475	-	-	88654475	6	5	9	0	1	1	0	1	0	0	0	0	8129	1624	56	0		0	KCNK10	14	88654475	Intron	DEL	T	TCGA-05-4396-01A-21D-1855-08	242619	88654475	18695065	14485	22636											
PTPN21	11099	broad.mit.edu	37	chr14	88934475	88934475	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccccgtaagaaattgtGggagcttagatgagcctgga	14	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88934475	T	T	88934475	1	4	9	0	1	0	0	0	0	0	0	0	12894	1363	47	2		2	PTPN21	14	88934475	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	280000	88934475	18415065	14486	22637											
EML5	161436	broad.mit.edu	37	chr14	89082466	89082466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacatagtctgctcttcatGggctgagaaagttactaacc	8	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89082466	T	T	89082466	1	4	9	0	1	0	0	0	0	0	0	0	5142	1363	47	2		2	EML5	14	89082466	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	147991	89082466	18267074	14487	22638											
EML5	161436	broad.mit.edu	37	chr14	89093302	89093302	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttcacatgttttactccCactgagacaaactgggtatc	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89093302	A	A	89093302	2	1	9	1	0	0	0	0	0	0	0	1	5142	581	21	2		2	EML5	14	89093302	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10836	89093302	18256238	14488	22639											
FOXN3	1112	broad.mit.edu	37	chr14	89756867	89756867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttactttccctttcatcGggagagctgatttttcacaa	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89756867	T	T	89756867	1	4	9	0	1	0	0	0	0	0	0	0	6081	1131	39	1		1	FOXN3	14	89756867	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	663565	89756867	17592673	14489	22640											
C14orf102	55051	broad.mit.edu	37	chr14	90754768	90754768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcctgtgagagtgcctctCgcagaggggccagcgggtaa	16	10	1	2	rs149143718		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90754768	A	A	90754768	3	1	9	1	0	0	0	0	1	0	0	0	1748	884	31	3	559	3	C14orf102	14	90754768	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	997901	90754768	16594772	14490	22641											
C14orf102	55051	broad.mit.edu	37	chr14	90754783	90754783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctcgcagaggggccagcGggtaaacactcactttcatg	11	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90754783	T	T	90754783	3	4	9	1	0	0	0	0	1	0	0	0	1748	1116	39	1	574	1	C14orf102	14	90754783	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	90754783	16594757	14491	22642											
C14orf102	55051	broad.mit.edu	37	chr14	90770447	90770447	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttgtagccaatgtgtGgttgactgatcataaatccc	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90770447	T	T	90770447	2	4	9	1	0	0	0	0	0	0	0	1	1748	1335	47	2		2	C14orf102	14	90770447	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15664	90770447	16579093	14492	22643											
C14orf102	55051	broad.mit.edu	37	chr14	90782987	90782987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgtccttttcagaatcGgtgtctgtctcagacctgct	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90782987	T	T	90782987	2	4	9	1	0	0	0	0	0	0	0	1	1748	1103	39	1		1	C14orf102	14	90782987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12540	90782987	16566553	14493	22644											
CALM1	801	broad.mit.edu	37	chr14	90866423	90866423	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataggctgatcagctgacCgaagaacagattgctggtaa	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90866423	A	A	90866423	2	1	9	1	0	0	0	0	0	0	0	1	2610	639	23	1		1	CALM1	14	90866423	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	83436	90866423	16483117	14494	22645											
TTC7B	145567	broad.mit.edu	37	chr14	91077093	91077093	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttattctcacctgtctcGggatcgctgaagtctggcaa	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91077093	T	T	91077093	2	4	9	1	0	0	0	0	0	0	0	1	16839	1103	39	1		1	TTC7B	14	91077093	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	210670	91077093	16272447	14495	22646											
CCDC88C	440193	broad.mit.edu	37	chr14	91850750	91850750	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttccagggaagcggaaggTagaccatcctgcttcactgc	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91850750	C	C	91850750	1	2	9	0	1	0	0	0	0	0	0	0	2893	1653	57	5		5	CCDC88C	14	91850750	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	773657	91850750	15498790	14496	22647											
TC2N	123036	broad.mit.edu	37	chr14	92251612	92251612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaatcatagtctctcccCacttgactcttccattggag	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92251612	A	A	92251612	3	1	9	1	0	0	0	0	1	0	0	0	15787	595	21	2	224	2	TC2N	14	92251612	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	400862	92251612	15097928	14497	22648											
FBLN5	10516	broad.mit.edu	37	chr14	92403262	92403262	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcaccaaagcacagcGgagaggaacaaaaggccggg	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92403262	C	C	92403262	1	2	9	0	1	0	0	0	0	0	0	0	5757	1131	39	4		4	FBLN5	14	92403262	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	151650	92403262	14946278	14498	22649											
TRIP11	9321	broad.mit.edu	37	chr14	92471076	92471076	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaaggtaaacaacatcttGagtatgggaagttgaagaaa	11	3	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92471076	T	T	92471076	3	4	9	1	0	0	0	0	1	0	0	0	16680	1299	45	3	2739	3	TRIP11	14	92471076	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67814	92471076	14878464	14499	22650											
CPSF2	53981	broad.mit.edu	37	chr14	92609374	92609374	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggatgagtgataaattgatGagatgttttgaagacaaaag	12	1	0	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92609374	T	T	92609374	3	4	9	1	0	0	0	0	1	0	0	0	3857	1290	45	3	902	3	CPSF2	14	92609374	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138298	92609374	14740166	14500	22651											
CPSF2	53981	broad.mit.edu	37	chr14	92627585	92627585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacaatcaagtagcagtcCgcagagtaagtgtgttttca	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92627585	A	A	92627585	3	1	9	1	0	0	0	0	1	0	0	0	3857	652	23	1	2301	1	CPSF2	14	92627585	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18211	92627585	14721955	14501	22652											
RIN3	79890	broad.mit.edu	37	chr14	93022099	93022099	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaattctgtttttcagtccGgttccagttgttggcaaagg	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93022099	T	T	93022099	2	4	9	1	0	0	0	0	0	0	0	1	13484	1103	39	1		1	RIN3	14	93022099	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	394514	93022099	14327441	14502	22653											
LGMN	5641	broad.mit.edu	37	chr14	93170994	93170994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattagttacctgtgaagcGgatacggcttctcacaaagg	11	9	1	1	rs61734480	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93170994	T	T	93170994	3	4	9	1	0	0	0	0	1	0	0	0	8827	1116	39	1	59	1	LGMN	14	93170994	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	148895	93170994	14178546	14503	22654											
LGMN	5641	broad.mit.edu	37	chr14	93171049	93171049	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaatgtctcaacgcatactCgtactgggagaaaacaaacg	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93171049	A	A	93171049	4	1	9	1	0	0	0	0	0	1	0	0	8827	893	31	3	114	3	LGMN	14	93171049	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	93171049	14178491	14504	22655											
KIAA1409	57578	broad.mit.edu	37	chr14	94044190	94044190	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccattctttcttgtaggtGagtgttgcctctgatcctgg	11	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94044190	T	T	94044190	2	4	9	1	0	0	0	0	0	0	0	1	8300	1277	45	3		3	KIAA1409	14	94044190	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	873141	94044190	13305350	14505	22656											
KIAA1409	57578	broad.mit.edu	37	chr14	94044270	94044270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttccagagtccgtttcGgagtcctttgcgtagtccgt	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94044270	T	T	94044270	3	4	9	1	0	0	0	0	1	0	0	0	8300	1116	39	1	1821	1	KIAA1409	14	94044270	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80	94044270	13305270	14506	22657											
KIAA1409	57578	broad.mit.edu	37	chr14	94120100	94120100	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactccagcatgatggttccCggcaatgcggcgggggtggc	16	11	0	1	rs139115792		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120100	A	A	94120100	2	1	9	1	0	0	0	0	0	0	0	1	8300	639	23	1		1	KIAA1409	14	94120100	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75830	94120100	13229440	14507	22658											
KIAA1409	57578	broad.mit.edu	37	chr14	94120288	94120288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatcgttgactttccagatGggacttttttacggacctta	9	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94120288	T	T	94120288	3	4	9	1	0	0	0	0	1	0	0	0	8300	1348	47	2	5923	2	KIAA1409	14	94120288	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	188	94120288	13229252	14508	22659											
ASB2	51676	broad.mit.edu	37	chr14	94419621	94419621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggttatgcacttaacGggagcaacattccctgttgc	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94419621	T	T	94419621	1	4	9	0	1	0	0	0	0	0	0	0	1027	1131	39	1		1	ASB2	14	94419621	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	299333	94419621	12929919	14509	22660											
ASB2	51676	broad.mit.edu	37	chr14	94419738	94419738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggatttgttggagatgtcCggctctgcccctgcttggag	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94419738	A	A	94419738	2	1	9	1	0	0	0	0	0	0	0	1	1027	639	23	1		1	ASB2	14	94419738	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	94419738	12929802	14510	22661											
DDX24	57062	broad.mit.edu	37	chr14	94521372	94521372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgtattttgtctgcacGgggaacagtgggatatcctc	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94521372	T	T	94521372	2	4	9	1	0	0	0	0	0	0	0	1	4384	1103	39	1		1	DDX24	14	94521372	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101634	94521372	12828168	14511	22662											
SERPINA12	145264	broad.mit.edu	37	chr14	94964446	94964446	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgaacccctgcttgatctCgtccagggtgctgtcctggg	13	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94964446	A	A	94964446	4	1	9	1	0	0	0	0	0	1	0	0	14202	893	31	3	971	3	SERPINA12	14	94964446	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	443074	94964446	12385094	14512	22663											
DICER1	23405	broad.mit.edu	37	chr14	95556876	95556876	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattagctttgaggcttcGgagggctcttcttgctgctg	13	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95556876	T	T	95556876	2	4	9	1	0	0	0	0	0	0	0	1	4561	1124	39	1		1	DICER1	14	95556876	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	592430	95556876	11792664	14513	22664											
DICER1	23405	broad.mit.edu	37	chr14	95556978	95556978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgactctgaccttccCgtcgtaagttctctcagccg	8	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95556978	A	A	95556978	3	1	9	1	0	0	0	0	1	0	0	0	4561	652	23	1	146	1	DICER1	14	95556978	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102	95556978	11792562	14514	22665											
CLMN	79789	broad.mit.edu	37	chr14	95675703	95675703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggaaatgtatggtgtcGgaattaaaggtaagaaaagc	14	2	0	1	rs73333260	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95675703	T	T	95675703	1	4	9	0	1	0	0	0	0	0	0	0	3574	1131	39	1		1	CLMN	14	95675703	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	118725	95675703	11673837	14515	22666											
C14orf49	161176	broad.mit.edu	37	chr14	95905425	95905425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgagaaatcctgactttGggatgttgttggtgaaaacc	12	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95905425	T	T	95905425	3	4	9	1	0	0	0	0	1	0	0	0	1789	1348	47	2	626	2	C14orf49	14	95905425	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	229722	95905425	11444115	14516	22667											
C14orf49	161176	broad.mit.edu	37	chr14	95932480	95932480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagctggagctcgatgtGgggctccagtgtgaccatca	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95932480	T	T	95932480	3	4	9	1	0	0	0	0	1	0	0	0	1789	1348	47	2	2572	2	C14orf49	14	95932480	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	27055	95932480	11417060	14517	22668											
ATG2B	55102	broad.mit.edu	37	chr14	96795889	96795889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaaaattccatttgccCaatggacatatcagtactaa	4	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96795889	A	A	96795889	3	1	9	1	0	0	0	0	1	0	0	0	1098	594	21	2	4547	2	ATG2B	14	96795889	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	863409	96795889	10553651	14518	22669											
VRK1	7443	broad.mit.edu	37	chr14	97342457	97342457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggaggccatacagaccCgtaagttgaacagttttgcc	11	10	0	3	rs149083861		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97342457	A	A	97342457	3	1	9	1	0	0	0	0	1	0	0	0	17346	666	23	1	1201	1	VRK1	14	97342457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	546568	97342457	10007083	14519	22670											
CYP46A1	10858	broad.mit.edu	37	chr14	100165848	100165848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggactccaagatgtacCgtgcgctccagactgtgttt	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100165848	A	A	100165848	3	1	9	1	0	0	0	0	1	0	0	0	4215	652	23	1	342	1	CYP46A1	14	100165848	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2823391	100165848	7183692	14520	22671											
DYNC1H1	1778	broad.mit.edu	37	chr14	102442092	102442092	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaaaagaattcatttcCtataacatcaacatagacat	4	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102442092	A	A	102442092	2	1	9	1	0	0	0	0	0	0	0	1	4881	668	24	2		2	DYNC1H1	14	102442092	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2276244	102442092	4907448	14521	22672											
DYNC1H1	1778	broad.mit.edu	37	chr14	102466514	102466514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagtgggtggagaatccCgctccccacccggactctgc	15	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102466514	A	A	102466514	1	1	9	0	1	0	0	0	0	0	0	0	4881	667	23	1		1	DYNC1H1	14	102466514	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24422	102466514	4883026	14522	22673											
DYNC1H1	1778	broad.mit.edu	37	chr14	102478403	102478403	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctacggaaccctggacccCaacaccagggaatggacaga	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102478403	A	A	102478403	2	1	9	1	0	0	0	0	0	0	0	1	4881	581	21	2		2	DYNC1H1	14	102478403	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11889	102478403	4871137	14523	22674											
DYNC1H1	1778	broad.mit.edu	37	chr14	102496076	102496076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggcacaaattcctcacGggagtgagctgcagtgagga	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102496076	T	T	102496076	1	4	9	0	1	0	0	0	0	0	0	0	4881	1131	39	1		1	DYNC1H1	14	102496076	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17673	102496076	4853464	14524	22675											
DYNC1H1	1778	broad.mit.edu	37	chr14	102516708	102516708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggccccatcagctgtccCgggcagtcttccagttttct	10	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102516708	A	A	102516708	1	1	9	0	1	0	0	0	0	0	0	0	4881	667	23	1		1	DYNC1H1	14	102516708	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20632	102516708	4832832	14525	22676											
HSP90AA1	3320	broad.mit.edu	37	chr14	102550184	102550184	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagttctctttatcttcCgccagttcagtaaagagttc	7	9	3	1	rs113261380	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102550184	A	A	102550184	2	1	9	1	0	0	0	0	0	0	0	1	7470	639	23	1		1	HSP90AA1	14	102550184	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33476	102550184	4799356	14526	22677											
HSP90AA1	3320	broad.mit.edu	37	chr14	102552379	102552379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttcgatcttgtttgttcGgtataaggttaatatgcagc	11	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102552379	T	T	102552379	3	4	9	1	0	0	0	0	1	0	0	0	7470	1116	39	1	1989	1	HSP90AA1	14	102552379	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2195	102552379	4797161	14527	22678											
RAGE	5891	broad.mit.edu	37	chr14	102700054	102700054	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgaggatcttctgagcGggtgtgccgatgacatcgtg	16	7	2	3	rs139034681		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102700054	T	T	102700054	2	4	9	1	0	0	0	0	0	0	0	1	13114	1103	39	1		1	RAGE	14	102700054	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	147675	102700054	4649486	14528	22679											
RAGE	5891	broad.mit.edu	37	chr14	102717246	102717246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccggggcccggtaccagcGggtggagatgtattccgtgt	16	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102717246	T	T	102717246	3	4	9	1	0	0	0	0	1	0	0	0	13114	1116	39	1	790	1	RAGE	14	102717246	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17192	102717246	4632294	14529	22680											
RCOR1	23186	broad.mit.edu	37	chr14	103148259	103148259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagacgcagtcaagaacGggacaatcttggcatgttgg	14	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103148259	T	T	103148259	3	4	9	1	0	0	0	0	1	0	0	0	13290	1116	39	1	390	1	RCOR1	14	103148259	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	431013	103148259	4201281	14530	22681											
MARK3	4140	broad.mit.edu	37	chr14	103918250	103918250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgtgtcctctcctctccCgcagtgaagttattcgaagt	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103918250	A	A	103918250	1	1	9	0	1	0	0	0	0	0	0	0	9406	667	23	1		1	MARK3	14	103918250	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	769991	103918250	3431290	14531	22682											
BAG5	9529	broad.mit.edu	37	chr14	104026973	104026973	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacggaaggatgtgcatcctCggaaagcggcagggaaggct	16	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104026973	A	A	104026973	4	1	9	1	0	0	0	0	0	1	0	0	1295	893	31	3	818	3	BAG5	14	104026973	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108723	104026973	3322567	14532	22683											
BAG5	9529	broad.mit.edu	37	chr14	104027293	104027293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgtctcctgtgctgccCgcttcctagcttgctgaata	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104027293	A	A	104027293	3	1	9	1	0	0	0	0	1	0	0	0	1295	652	23	1	1138	1	BAG5	14	104027293	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	320	104027293	3322247	14533	22684											
AHNAK2	113146	broad.mit.edu	37	chr14	105406643	105406643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctgtggcactagaaaGggaaggatccacgtctctct	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105406643	T	T	105406643	3	4	9	1	0	0	0	0	1	0	0	0	415	1000	35	2	2246	2	AHNAK2	14	105406643	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1379350	105406643	1942897	14534	22685											
AHNAK2	113146	broad.mit.edu	37	chr14	105408732	105408732	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggacctccagatcagcGgaagggggctgaatgctgag	16	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105408732	T	T	105408732	2	4	9	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105408732	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2089	105408732	1940808	14535	22686											
AHNAK2	113146	broad.mit.edu	37	chr14	105408863	105408863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctggggcagacacccCgaacgacggcatcttgaact	11	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105408863	A	A	105408863	3	1	9	1	0	0	0	0	1	0	0	0	415	652	23	1	4466	1	AHNAK2	14	105408863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131	105408863	1940677	14536	22687											
AHNAK2	113146	broad.mit.edu	37	chr14	105409323	105409323	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctcagacacatccacGgacgcctccatggacttgcc	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105409323	T	T	105409323	2	4	9	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105409323	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	460	105409323	1940217	14537	22688											
AHNAK2	113146	broad.mit.edu	37	chr14	105409358	105409358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctggggccgacacccCgaatgatggcatcttgaact	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105409358	A	A	105409358	3	1	9	1	0	0	0	0	1	0	0	0	415	652	23	1	4961	1	AHNAK2	14	105409358	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	105409358	1940182	14538	22689											
AHNAK2	113146	broad.mit.edu	37	chr14	105409806	105409806	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcctccacctttggcgcGgtcacatccactgatgcctc	9	17	1	1	rs140129247	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105409806	T	T	105409806	2	4	9	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105409806	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	448	105409806	1939734	14539	22690											
AHNAK2	113146	broad.mit.edu	37	chr14	105414308	105414308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctggggcagacacccCgaatgacggcatcttgaact	11	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105414308	A	A	105414308	3	1	9	1	0	0	0	0	1	0	0	0	415	652	23	1	9911	1	AHNAK2	14	105414308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4502	105414308	1935232	14540	22691											
AHNAK2	113146	broad.mit.edu	37	chr14	105418380	105418380	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgtccagcttggctccCggggcctcgacgtccacctc	11	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105418380	A	A	105418380	2	1	9	1	0	0	0	0	0	0	0	1	415	639	23	1		1	AHNAK2	14	105418380	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4072	105418380	1931160	14541	22692											
AHNAK2	113146	broad.mit.edu	37	chr14	105419037	105419037	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgggcatctccactttGggcaggtgcactttggggcc	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105419037	T	T	105419037	2	4	9	1	0	0	0	0	0	0	0	1	415	1335	47	2		2	AHNAK2	14	105419037	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	657	105419037	1930503	14542	22693											
PACS2	23241	broad.mit.edu	37	chr14	105856250	105856250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagctgtgcccaccaggcGgggctgtgccctgaggagag	19	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105856250	T	T	105856250	1	4	9	0	1	0	0	0	0	0	0	0	11467	1131	39	1		1	PACS2	14	105856250	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	437213	105856250	1493290	14543	22694											
MTA1	9112	broad.mit.edu	37	chr14	105930748	105930748	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttccaactttgttgtcCgtagccacacagtcttacca	5	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105930748	A	A	105930748	1	1	9	0	1	0	0	0	0	0	0	0	10002	667	23	1		1	MTA1	14	105930748	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	74498	105930748	1418792	14544	22695											
OR4M2	390538	broad.mit.edu	37	chr15	22368898	22368898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcttacactttgctgGggcttcggagatgttcttgc	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22368898	T	T	22368898	3	4	9	1	0	0	0	0	1	0	0	0	11170	1232	43	2	325	2	OR4M2	15	22368898	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08		22368898	80162494	14545	22696											
TUBGCP5	114791	broad.mit.edu	37	chr15	22848284	22848284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatatttcagttgatagatGggaaggtaactgtgagaaac	11	3	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22848284	T	T	22848284	3	4	9	1	0	0	0	0	1	0	0	0	16895	1348	47	2	908	2	TUBGCP5	15	22848284	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	479386	22848284	79683108	14546	22697											
TUBGCP5	114791	broad.mit.edu	37	chr15	22851020	22851020	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaagttccacctgatactCgaaatgtcgtccgggcctct	9	13	1	2	rs142189359	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22851020	A	A	22851020	2	1	9	1	0	0	0	0	0	0	0	1	16895	876	31	3		3	TUBGCP5	15	22851020	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2736	22851020	79680372	14547	22698											
TUBGCP5	114791	broad.mit.edu	37	chr15	22851033	22851033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatactcgaaatgtcgtccGggcctctcacctgcttaaca	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22851033	T	T	22851033	3	4	9	1	0	0	0	0	1	0	0	0	16895	1116	39	1	1337	1	TUBGCP5	15	22851033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	22851033	79680359	14548	22699											
TUBGCP5	114791	broad.mit.edu	37	chr15	22862944	22862944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcttgaaggatgtatttGgagcagagtgactttcacga	11	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22862944	T	T	22862944	3	4	9	1	0	0	0	0	1	0	0	0	16895	1339	47	2	2023	2	TUBGCP5	15	22862944	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11911	22862944	79668448	14549	22700											
TUBGCP5	114791	broad.mit.edu	37	chr15	22863004	22863004	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtgtggatagatcatcGgaatctgtgacatgccagac	12	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22863004	T	T	22863004	2	4	9	1	0	0	0	0	0	0	0	1	16895	1103	39	1		1	TUBGCP5	15	22863004	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60	22863004	79668388	14550	22701											
TUBGCP5	114791	broad.mit.edu	37	chr15	22864190	22864190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttctctccattcaggttGgtagaatacttgcaagctat	7	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22864190	T	T	22864190	3	4	9	1	0	0	0	0	1	0	0	0	16895	1339	47	2	2210	2	TUBGCP5	15	22864190	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1186	22864190	79667202	14551	22702											
CYFIP1	23191	broad.mit.edu	37	chr15	22929739	22929739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccattgagcgtttctgcgGggaagtgaggcgcctgtgcc	16	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22929739	T	T	22929739	3	4	9	1	0	0	0	0	1	0	0	0	4170	1232	43	2	431	2	CYFIP1	15	22929739	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65549	22929739	79601653	14552	22703											
NIPA1	123606	broad.mit.edu	37	chr15	23052628	23052628	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttcctccagctcagcctGagttgtcacactctcagact	6	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23052628	T	T	23052628	3	4	9	1	0	0	0	0	1	0	0	0	10517	1299	45	3	552	3	NIPA1	15	23052628	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	122889	23052628	79478764	14553	22704											
MAGEL2	54551	broad.mit.edu	37	chr15	23890163	23890163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcccagggccttgggccCtgccagtcatgaaaggctag	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23890163	A	A	23890163	3	1	9	1	0	0	0	0	1	0	0	0	9281	680	24	2	1026	2	MAGEL2	15	23890163	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	837535	23890163	78641229	14554	22705											
NDN	4692	broad.mit.edu	37	chr15	23931903	23931903	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggctggttagcctcagGtgcagcccgaacacccgggc	14	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23931903	A	A	23931903	2	1	9	1	0	0	0	0	0	0	0	1	10342	1252	44	4		4	NDN	15	23931903	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41740	23931903	78599489	14555	22706											
C15orf2	23742	broad.mit.edu	37	chr15	24921131	24921131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccgcccggtcgggctcaCtctgtacccaccccgcgccc	9	23	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921131	A	A	24921131	3	1	9	1	0	0	0	0	1	0	0	0	1797	564	20	3	119	3	C15orf2	15	24921131	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	989228	24921131	77610261	14556	22707											
C15orf2	23742	broad.mit.edu	37	chr15	24923730	24923730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacacttggggccactgatGggcagcagaagtctgacagt	13	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24923730	T	T	24923730	3	4	9	1	0	0	0	0	1	0	0	0	1797	1348	47	2	2718	2	C15orf2	15	24923730	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2599	24923730	77607662	14557	22708											
SNURF	8926	broad.mit.edu	37	chr15	25213093	25213093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaggtgtcagttgtaccCgaggcgttctcagcagcagc	13	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25213093	A	A	25213093	3	1	9	1	0	0	0	0	1	0	0	0	14992	652	23	1	135	1	SNURF	15	25213093	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	289363	25213093	77318299	14558	22709											
SNRPN	6638	broad.mit.edu	37	chr15	25223434	25223434	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaataggcatgccgcctccGggaatgagaccccctccacc	9	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25223434	T	T	25223434	2	4	9	1	0	0	0	0	0	0	0	1	14984	1103	39	1		1	SNRPN	15	25223434	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10341	25223434	77307958	14559	22710											
UBE3A	7337	broad.mit.edu	37	chr15	25601880	25601880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaaagttccttttttcccCattagcttcctgtagacaac	5	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25601880	A	A	25601880	3	1	9	1	0	0	0	0	1	0	0	0	17005	594	21	2	725	2	UBE3A	15	25601880	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	378446	25601880	76929512	14560	22711											
GABRB3	2562	broad.mit.edu	37	chr15	26806278	26806278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattttgggcaaggtctccCgaaggtgggtgttgatggtt	17	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26806278	A	A	26806278	3	1	9	1	0	0	0	0	1	0	0	0	6228	652	23	1	548	1	GABRB3	15	26806278	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1204398	26806278	75725114	14561	22712											
OCA2	4948	broad.mit.edu	37	chr15	28200298	28200298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccctgaggaaagaaagctGggtacctttttttggagttc	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28200298	T	T	28200298	1	4	9	0	1	0	0	0	0	0	0	0	10910	1363	47	2		2	OCA2	15	28200298	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1394020	28200298	74331094	14562	22713											
OCA2	4948	broad.mit.edu	37	chr15	28202870	28202870	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggcgccagacgtgaatctCgtgcttcagttctgcagaga	12	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28202870	A	A	28202870	4	1	9	1	0	0	0	0	0	1	0	0	10910	893	31	3	904	3	OCA2	15	28202870	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2572	28202870	74328522	14563	22714											
OCA2	4948	broad.mit.edu	37	chr15	28228482	28228482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcaaccctagcatgctGgtacgtaccatcttcctcag	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28228482	T	T	28228482	1	4	9	0	1	0	0	0	0	0	0	0	10910	1363	47	2		2	OCA2	15	28228482	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	25612	28228482	74302910	14564	22715											
OCA2	4948	broad.mit.edu	37	chr15	28231760	28231760	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaataatcgaaaaatccCgtttctgaaaatatggctac	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28231760	A	A	28231760	2	1	9	1	0	0	0	0	0	0	0	1	10910	639	23	1		1	OCA2	15	28231760	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3278	28231760	74299632	14565	22716											
OCA2	4948	broad.mit.edu	37	chr15	28235704	28235704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtggtaagccagggattGggactgtgacaacttacatc	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28235704	T	T	28235704	1	4	9	0	1	0	0	0	0	0	0	0	10910	1363	47	2		2	OCA2	15	28235704	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3944	28235704	74295688	14566	22717											
OCA2	4948	broad.mit.edu	37	chr15	28272996	28272996	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccaccgctgctgccagggtGggcaccccaagtccgcctac	12	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28272996	C	C	28272996	1	2	9	0	1	0	0	0	0	0	0	0	10910	1363	47	4		4	OCA2	15	28272996	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37292	28272996	74258396	14567	22718											
HERC2	8924	broad.mit.edu	37	chr15	28369236	28369236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgaacccaacagaaggccCgagtccagtttcgtcgagcg	12	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28369236	A	A	28369236	3	1	9	1	0	0	0	0	1	0	0	0	7125	652	23	1	1405	1	HERC2	15	28369236	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	96240	28369236	74162156	14568	22719											
HERC2	8924	broad.mit.edu	37	chr15	28375621	28375621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaaatctggttttagtGggtttaaacaaacagaatct	7	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28375621	T	T	28375621	1	4	9	0	1	0	0	0	0	0	0	0	7125	1363	47	2		2	HERC2	15	28375621	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6385	28375621	74155771	14569	22720											
HERC2	8924	broad.mit.edu	37	chr15	28386698	28386698	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgcgccttcaatgcccccGagctggcccctgtgattatg	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28386698	T	T	28386698	2	4	9	1	0	0	0	0	0	0	0	1	7125	1045	37	3		3	HERC2	15	28386698	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11077	28386698	74144694	14570	22721											
HERC2	8924	broad.mit.edu	37	chr15	28443579	28443579	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatttgtattttggtgtGgtgacagaggctttgacccg	12	9	0	3	rs61756155		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28443579	T	T	28443579	2	4	9	1	0	0	0	0	0	0	0	1	7125	1335	47	2		2	HERC2	15	28443579	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56881	28443579	74087813	14571	22722											
HERC2	8924	broad.mit.edu	37	chr15	28443913	28443913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatctaaccatcattccCacctagaattaaaatgaaat	3	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28443913	A	A	28443913	2	1	9	1	0	0	0	0	0	0	0	1	7125	581	21	2		2	HERC2	15	28443913	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	334	28443913	74087479	14572	22723											
HERC2	8924	broad.mit.edu	37	chr15	28446680	28446680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgtacgtctggctctcCgtcacaacagcaccagtaga	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28446680	A	A	28446680	2	1	9	1	0	0	0	0	0	0	0	1	7125	639	23	1		1	HERC2	15	28446680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2767	28446680	74084712	14573	22724											
HERC2	8924	broad.mit.edu	37	chr15	28451353	28451353	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaaaatttagtgctgtGgattaaaaactgtcaaggct	9	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28451353	T	T	28451353	1	4	9	0	1	0	0	0	0	0	0	0	7125	1363	47	2		2	HERC2	15	28451353	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4673	28451353	74080039	14574	22725											
HERC2	8924	broad.mit.edu	37	chr15	28456228	28456228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgggagagcagcgccCgacctgctttcaggatgtat	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28456228	A	A	28456228	3	1	9	1	0	0	0	0	1	0	0	0	7125	652	23	1	7715	1	HERC2	15	28456228	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4875	28456228	74075164	14575	22726											
HERC2	8924	broad.mit.edu	37	chr15	28457545	28457545	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacactgtacaaacgacacGagtttaagacggcagctatt	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28457545	T	T	28457545	1	4	9	0	1	0	0	0	0	0	0	0	7125	1073	37	3		3	HERC2	15	28457545	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1317	28457545	74073847	14576	22727											
HERC2	8924	broad.mit.edu	37	chr15	28474439	28474439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgacttccagcagcatcCgattaaaaggcgggatcaaa	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28474439	A	A	28474439	3	1	9	1	0	0	0	0	1	0	0	0	7125	652	23	1	9570	1	HERC2	15	28474439	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16894	28474439	74056953	14577	22728											
HERC2	8924	broad.mit.edu	37	chr15	28478343	28478343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagctatcctcctccaacGgggcaaagaacttaacaatt	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28478343	T	T	28478343	3	4	9	1	0	0	0	0	1	0	0	0	7125	1116	39	1	10136	1	HERC2	15	28478343	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3904	28478343	74053049	14578	22729											
HERC2	8924	broad.mit.edu	37	chr15	28478874	28478874	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcttccacgggatgctcGgggggaaacatgatcggtgt	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28478874	T	T	28478874	2	4	9	1	0	0	0	0	0	0	0	1	7125	1103	39	1		1	HERC2	15	28478874	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	531	28478874	74052518	14579	22730											
HERC2	8924	broad.mit.edu	37	chr15	28482336	28482336	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaccaaaaggacagctctctCctgcagctgtaaccgcacgt	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28482336	A	A	28482336	1	1	9	0	1	0	0	0	0	0	0	0	7125	870	30	3		3	HERC2	15	28482336	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3462	28482336	74049056	14580	22731											
HERC2	8924	broad.mit.edu	37	chr15	28499551	28499551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagactcacagatcccCgtattaataaggtctttatc	6	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28499551	A	A	28499551	2	1	9	1	0	0	0	0	0	0	0	1	7125	639	23	1		1	HERC2	15	28499551	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17215	28499551	74031841	14581	22732											
FAM189A1	23359	broad.mit.edu	37	chr15	29527102	29527102	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaacctttctgctgtaGggattactaattactaattt	6	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29527102	T	T	29527102	1	4	9	0	1	0	0	0	0	0	0	0	5562	1015	35	2		2	FAM189A1	15	29527102	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1027551	29527102	73004290	14582	22733											
NDNL2	56160	broad.mit.edu	37	chr15	29561181	29561181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggaattcgtagtcgacGgggtcggtgtggggtatccg	17	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29561181	T	T	29561181	2	4	9	1	0	0	0	0	0	0	0	1	10343	1103	39	1		1	NDNL2	15	29561181	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34079	29561181	72970211	14583	22734											
NDNL2	56160	broad.mit.edu	37	chr15	29561561	29561561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatgtccttgtagtcccCgatgacgtgcttcagtatgt	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29561561	A	A	29561561	3	1	9	1	0	0	0	0	1	0	0	0	10343	652	23	1	569	1	NDNL2	15	29561561	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	380	29561561	72969831	14584	22735											
TJP1	7082	broad.mit.edu	37	chr15	30001004	30001004	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacttgcgttcaaatggtcGggcagaacttgtatatggtt	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30001004	T	T	30001004	2	4	9	1	0	0	0	0	0	0	0	1	16052	1124	39	1		1	TJP1	15	30001004	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	439443	30001004	72530388	14585	22736											
TJP1	7082	broad.mit.edu	37	chr15	30011132	30011132	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagacgatgttcatagtttcGagaaaactggtccgtatagc	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30011132	T	T	30011132	2	4	9	1	0	0	0	0	0	0	0	1	16052	1066	37	3		3	TJP1	15	30011132	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10128	30011132	72520260	14586	22737											
TJP1	7082	broad.mit.edu	37	chr15	30011145	30011145	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttcgagaaaactggtcCgtatagcttgaggactcgta	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30011145	A	A	30011145	2	1	9	1	0	0	0	0	0	0	0	1	16052	639	23	1		1	TJP1	15	30011145	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	30011145	72520247	14587	22738											
TJP1	7082	broad.mit.edu	37	chr15	30034947	30034947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaggagttgagacagccCcaggtttagaaattctctct	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30034947	A	A	30034947	3	1	9	1	0	0	0	0	1	0	0	0	16052	623	22	2	4277	2	TJP1	15	30034947	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23802	30034947	72496445	14588	22739											
TJP1	7082	broad.mit.edu	37	chr15	30058481	30058481	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaataccttcatttttccGggatttcaccagtgtgactt	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30058481	T	T	30058481	2	4	9	1	0	0	0	0	0	0	0	1	16052	1115	39	1		1	TJP1	15	30058481	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23534	30058481	72472911	14589	22740											
ARHGAP11B	89839	broad.mit.edu	37	chr15	30927635	30927635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtatctaaacatttttGgggaagagtggaggaaggat	13	2	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30927635	T	T	30927635	1	4	9	0	1	0	0	0	0	0	0	0	866	1363	47	2		2	ARHGAP11B	15	30927635	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	869154	30927635	71603757	14590	22741											
MTMR15	22909	broad.mit.edu	37	chr15	31197996	31197996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcatccttactaccttcGgagtttccttgtggtgctga	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31197996	T	T	31197996	3	4	9	1	0	0	0	0	1	0	0	0	10037	1116	39	1	1132	1	MTMR15	15	31197996	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	270361	31197996	71333396	14591	22742											
MTMR10	54893	broad.mit.edu	37	chr15	31234126	31234126	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctctaaaatactgctcCgtatcactgttctggctgtc	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31234126	A	A	31234126	2	1	9	1	0	0	0	0	0	0	0	1	10033	639	23	1		1	MTMR10	15	31234126	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36130	31234126	71297266	14592	22743											
MTMR10	54893	broad.mit.edu	37	chr15	31234147	31234147	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatcactgttctggctgtcGgtttgctgagctggatctgg	14	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31234147	T	T	31234147	2	4	9	1	0	0	0	0	0	0	0	1	10033	1103	39	1		1	MTMR10	15	31234147	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	31234147	71297245	14593	22744											
MTMR15	22909	broad.mit.edu	37	chr15	31234313	31234313	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattatgttccggggattccCtttttagaaagattgaagga	10	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31234313	A	A	31234313	1	1	9	0	1	0	0	0	0	0	0	0	10037	696	24	2		2	MTMR15	15	31234313	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	166	31234313	71297079	14594	22745											
TRPM1	4308	broad.mit.edu	37	chr15	31294433	31294433	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacttggcattgccattcCgtcgtcaattgctggtccgt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31294433	A	A	31294433	2	1	9	1	0	0	0	0	0	0	0	1	16710	639	23	1		1	TRPM1	15	31294433	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60120	31294433	71236959	14595	22746											
TRPM1	4308	broad.mit.edu	37	chr15	31295095	31295095	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacattcagaagaagcccGggaccgtgcctggatcaggt	12	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31295095	T	T	31295095	2	4	9	1	0	0	0	0	0	0	0	1	16710	1115	39	1		1	TRPM1	15	31295095	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	662	31295095	71236297	14596	22747											
TRPM1	4308	broad.mit.edu	37	chr15	31339360	31339360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtccgaaagtttttcCgagtgtagttgcagcggtag	14	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31339360	A	A	31339360	3	1	9	1	0	0	0	0	1	0	0	0	16710	652	23	1	3215	1	TRPM1	15	31339360	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44265	31339360	71192032	14597	22748											
TRPM1	4308	broad.mit.edu	37	chr15	31341634	31341634	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgttgcatgttcactcCgttttcaatcaggagcttca	8	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31341634	A	A	31341634	4	1	9	1	0	0	0	0	0	1	0	0	16710	661	23	1	3425	1	TRPM1	15	31341634	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2274	31341634	71189758	14598	22749											
TRPM1	4308	broad.mit.edu	37	chr15	31362261	31362261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattggaatatccgccaccCtggaattcaagaactccata	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31362261	A	A	31362261	3	1	9	1	0	0	0	0	1	0	0	0	16710	680	24	2	4725	2	TRPM1	15	31362261	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20627	31362261	71169131	14599	22750											
TRPM1	4308	broad.mit.edu	37	chr15	31362329	31362329	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttggcaacagaccatttctCaggctgagtctccacctgtt	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31362329	A	A	31362329	4	1	9	1	0	0	0	0	0	1	0	0	16710	835	29	3	4793	3	TRPM1	15	31362329	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68	31362329	71169063	14600	22751											
FMN1	342184	broad.mit.edu	37	chr15	33129396	33129396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattgctttatccaggacGggaagctgcttctcagcctt	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33129396	T	T	33129396	1	4	9	0	1	0	0	0	0	0	0	0	6007	1131	39	1		1	FMN1	15	33129396	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1767067	33129396	69401996	14601	22752											
FMN1	342184	broad.mit.edu	37	chr15	33191088	33191088	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtagtccaccagattaatccCattatcctaggtttaaaaga	6	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33191088	G	G	33191088	3	3	9	1	0	0	0	0	1	0	0	0	6007	594	21	4	626	4	FMN1	15	33191088	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61692	33191088	69340304	14602	22753											
FMN1	342184	broad.mit.edu	37	chr15	33192181	33192181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattatgaaaaataaataccCgacttttgacatccttgagt	5	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33192181	A	A	33192181	3	1	9	1	0	0	0	0	1	0	0	0	6007	666	23	1	638	1	FMN1	15	33192181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1093	33192181	69339211	14603	22754											
FMN1	342184	broad.mit.edu	37	chr15	33192241	33192241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatccatcggcttgtcccCgagtcctatttcctccattc	5	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33192241	A	A	33192241	3	1	9	1	0	0	0	0	1	0	0	0	6007	652	23	1	698	1	FMN1	15	33192241	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	33192241	69339151	14604	22755											
FMN1	342184	broad.mit.edu	37	chr15	33256408	33256408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaaattcactggggtccCgaatgtcaggttcttctaag	9	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33256408	A	A	33256408	3	1	9	1	0	0	0	0	1	0	0	0	6007	652	23	1	1273	1	FMN1	15	33256408	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64167	33256408	69274984	14605	22756											
FMN1	342184	broad.mit.edu	37	chr15	33261457	33261457	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgctttcactttcacaGggcttgaggaaggtctctct	10	10	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33261457	T	T	33261457	2	4	9	1	0	0	0	0	0	0	0	1	6007	987	35	2		2	FMN1	15	33261457	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5049	33261457	69269935	14606	22757											
RYR3	6263	broad.mit.edu	37	chr15	33855153	33855153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatatagccagtggtctgtGggtgacctacaaagcacaag	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33855153	T	T	33855153	3	4	9	1	0	0	0	0	1	0	0	0	13881	1357	47	2	1130	2	RYR3	15	33855153	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	593696	33855153	68676239	14607	22758											
RYR3	6263	broad.mit.edu	37	chr15	33928640	33928640	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagccaggggatgtggtcGgatgtatgattaacctggat	16	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33928640	T	T	33928640	4	4	9	1	0	0	0	0	0	1	0	0	13881	1117	39	1	3551	1	RYR3	15	33928640	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73487	33928640	68602752	14608	22759											
RYR3	6263	broad.mit.edu	37	chr15	34080396	34080396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccataatacgtgaaatgacGgggaggctctttgtaaacgc	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34080396	T	T	34080396	1	4	9	0	1	0	0	0	0	0	0	0	13881	1131	39	1		1	RYR3	15	34080396	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	151756	34080396	68450996	14609	22760											
RYR3	6263	broad.mit.edu	37	chr15	34111963	34111963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattctttccagcaaattGgaagacgaccctttgtacac	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34111963	T	T	34111963	3	4	9	1	0	0	0	0	1	0	0	0	13881	1339	47	2	11019	2	RYR3	15	34111963	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31567	34111963	68419429	14610	22761											
CHRM5	1133	broad.mit.edu	37	chr15	34355491	34355491	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagtttctctctgagccCaccatcacttttggcactgc	6	15	3	1	rs139101467	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34355491	A	A	34355491	2	1	9	1	0	0	0	0	0	0	0	1	3411	581	21	2		2	CHRM5	15	34355491	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	243528	34355491	68175901	14611	22762											
CHRM5	1133	broad.mit.edu	37	chr15	34355570	34355570	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctactgtcgaatctacCgggaaacagagaagcgaacc	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34355570	A	A	34355570	2	1	9	1	0	0	0	0	0	0	0	1	3411	643	23	1		1	CHRM5	15	34355570	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	79	34355570	68175822	14612	22763											
C15orf24	56851	broad.mit.edu	37	chr15	34393960	34393960	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccctcagcagcagccccGggcacctccgagctctggac	11	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34393960	T	T	34393960	2	4	9	1	0	0	0	0	0	0	0	1	1799	1103	39	1		1	C15orf24	15	34393960	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38390	34393960	68137432	14613	22764											
PGBD4	161779	broad.mit.edu	37	chr15	34396284	34396284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgatgatgtcacacctcttCgtctgtctggaagacatttc	8	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34396284	A	A	34396284	3	1	9	1	0	0	0	0	1	0	0	0	11878	884	31	3	1554	3	PGBD4	15	34396284	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2324	34396284	68135108	14614	22765											
TMEM85	51234	broad.mit.edu	37	chr15	34517781	34517781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggagactcgctctaccCagtcggttacttggacaagc	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34517781	A	A	34517781	3	1	9	1	0	0	0	0	1	0	0	0	16330	594	21	2	137	2	TMEM85	15	34517781	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	121497	34517781	68013611	14615	22766											
SLC12A6	9990	broad.mit.edu	37	chr15	34536214	34536214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggtctccagttgggtgttCgaagtaatgtttgcaaggca	15	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34536214	A	A	34536214	3	1	9	1	0	0	0	0	1	0	0	0	14500	884	31	3	1493	3	SLC12A6	15	34536214	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18433	34536214	67995178	14616	22767											
LPCAT4	254531	broad.mit.edu	37	chr15	34657242	34657242	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacggaaaggttctcagctcGggacacaactttgggcaggt	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34657242	T	T	34657242	2	4	9	1	0	0	0	0	0	0	0	1	9000	1124	39	1		1	LPCAT4	15	34657242	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	121028	34657242	67874150	14617	22768											
AQR	9716	broad.mit.edu	37	chr15	35166939	35166939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactccaacgcgaacaaagcGagtgaagagagactgctcca	10	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35166939	T	T	35166939	3	4	9	1	0	0	0	0	1	0	0	0	837	1058	37	3	1121	3	AQR	15	35166939	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	509697	35166939	67364453	14618	22769											
AQR	9716	broad.mit.edu	37	chr15	35182405	35182405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacactgttactcactccCatttgctcacctgctgaaat	4	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35182405	A	A	35182405	1	1	9	0	1	0	0	0	0	0	0	0	837	609	21	2		2	AQR	15	35182405	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15466	35182405	67348987	14619	22770											
AQR	9716	broad.mit.edu	37	chr15	35236601	35236601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtgtttaaaaaagaatGggaagtggtctggcttcttc	12	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35236601	T	T	35236601	3	4	9	1	0	0	0	0	1	0	0	0	837	1348	47	2	4218	2	AQR	15	35236601	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54196	35236601	67294791	14620	22771											
AQR	9716	broad.mit.edu	37	chr15	35236693	35236693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttaagctttaaagaagccCtagtaggctttttagcagtc	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35236693	A	A	35236693	1	1	9	0	1	0	0	0	0	0	0	0	837	696	24	2		2	AQR	15	35236693	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	35236693	67294699	14621	22772											
ZNF770	54989	broad.mit.edu	37	chr15	35273859	35273859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaggaagacagggttgccCggtgctaccaggaataaaat	12	7	0	1	rs144115406		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35273859	A	A	35273859	3	1	9	1	0	0	0	0	1	0	0	0	18272	652	23	1	302	1	ZNF770	15	35273859	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37166	35273859	67257533	14622	22773											
C15orf41	84529	broad.mit.edu	37	chr15	36911119	36911119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacataaatgtagctacacCgtgactctacaggaaccctg	7	11	1	1	rs140803800	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36911119	A	A	36911119	1	1	9	0	1	0	0	0	0	0	0	0	1808	667	23	1		1	C15orf41	15	36911119	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1637260	36911119	65620273	14623	22774											
MEIS2	4212	broad.mit.edu	37	chr15	37184508	37184508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatcatggctgggtggtGgggatggcttggcaaatatg	16	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37184508	T	T	37184508	3	4	9	1	0	0	0	0	1	0	0	0	9561	1348	47	2	137	2	MEIS2	15	37184508	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	273389	37184508	65346884	14624	22775											
MEIS2	4212	broad.mit.edu	37	chr15	37184538	37184538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaatatgaatgcattgGgggtccatgtcttaattgag	12	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37184538	T	T	37184538	3	4	9	1	0	0	0	0	1	0	0	0	9561	1232	43	2	167	2	MEIS2	15	37184538	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	37184538	65346854	14625	22776											
MEIS2	4212	broad.mit.edu	37	chr15	37188923	37188923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtccagtcatcatactcCgtttctgtactctgcgaaca	7	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37188923	A	A	37188923	1	1	9	0	1	0	0	0	0	0	0	0	9561	667	23	1		1	MEIS2	15	37188923	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4385	37188923	65342469	14626	22777											
MEIS2	4212	broad.mit.edu	37	chr15	37391595	37391595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagggagaggaggcatcGggacaggcccctcttaggag	17	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37391595	T	T	37391595	1	4	9	0	1	0	0	0	0	0	0	0	9561	1131	39	1		1	MEIS2	15	37391595	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	202672	37391595	65139797	14627	22778											
TMCO5A	145942	broad.mit.edu	37	chr15	38234535	38234535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcaaacagttctcagacCaatttctatttggaattgaa	7	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38234535	A	A	38234535	1	1	9	0	1	0	0	0	0	0	0	0	16122	609	21	2		2	TMCO5A	15	38234535	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	842940	38234535	64296857	14628	22779											
THBS1	7057	broad.mit.edu	37	chr15	39880276	39880276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctggagccactggtcccCgtggtcatcttgttctgtga	13	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39880276	A	A	39880276	3	1	9	1	0	0	0	0	1	0	0	0	15976	652	23	1	1358	1	THBS1	15	39880276	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1645741	39880276	62651116	14629	22780											
THBS1	7057	broad.mit.edu	37	chr15	39883472	39883472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccgctgtgacaactgtccCtacaaccacaacccagatca	6	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39883472	A	A	39883472	2	1	9	1	0	0	0	0	0	0	0	1	15976	668	24	2		2	THBS1	15	39883472	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3196	39883472	62647920	14630	22781											
THBS1	7057	broad.mit.edu	37	chr15	39885516	39885516	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttgtacctatccctgtGggtgctgaggatgtctagga	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39885516	T	T	39885516	1	4	9	0	1	0	0	0	0	0	0	0	15976	1363	47	2		2	THBS1	15	39885516	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2044	39885516	62645876	14631	22782											
THBS1	7057	broad.mit.edu	37	chr15	39885655	39885655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcatcaacaccgaaaGggacgatgactatgctggat	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39885655	T	T	39885655	3	4	9	1	0	0	0	0	1	0	0	0	15976	1000	35	2	3123	2	THBS1	15	39885655	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139	39885655	62645737	14632	22783											
FSIP1	161835	broad.mit.edu	37	chr15	40062637	40062637	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gattatcctacctgaacactCagagattatctgatgttgaa	7	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40062637	A	A	40062637	4	1	9	1	0	0	0	0	0	1	0	0	6134	835	29	3	1484	3	FSIP1	15	40062637	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	176982	40062637	62468755	14633	22784											
GPR176	11245	broad.mit.edu	37	chr15	40093786	40093786	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccaggagctggctaccCgagcgtatgctgggttccag	13	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40093786	A	A	40093786	2	1	9	1	0	0	0	0	0	0	0	1	6738	639	23	1		1	GPR176	15	40093786	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31149	40093786	62437606	14634	22785											
EIF2AK4	440275	broad.mit.edu	37	chr15	40241382	40241382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcataacaagccccctccCaagtcttttcatgaagaaat	6	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40241382	A	A	40241382	2	1	9	1	0	0	0	0	0	0	0	1	5039	581	21	2		2	EIF2AK4	15	40241382	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	147596	40241382	62290010	14635	22786											
EIF2AK4	440275	broad.mit.edu	37	chr15	40265885	40265885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacagagacagttttccCgatacttcattgagtttgaa	8	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40265885	A	A	40265885	2	1	9	1	0	0	0	0	0	0	0	1	5039	644	23	1		1	EIF2AK4	15	40265885	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24503	40265885	62265507	14636	22787											
EIF2AK4	440275	broad.mit.edu	37	chr15	40282412	40282412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggttggccttttaaattaGgaagtaggtataactttatg	10	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40282412	T	T	40282412	1	4	9	0	1	0	0	0	0	0	0	0	5039	1015	35	2		2	EIF2AK4	15	40282412	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16527	40282412	62248980	14637	22788											
EIF2AK4	440275	broad.mit.edu	37	chr15	40294929	40294929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagggcaacttctcaatcCgtacagccaagatgcagcag	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40294929	A	A	40294929	3	1	9	1	0	0	0	0	1	0	0	0	5039	652	23	1	3261	1	EIF2AK4	15	40294929	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12517	40294929	62236463	14638	22789											
EIF2AK4	440275	broad.mit.edu	37	chr15	40295514	40295514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcttccttttgacctgcGggtgaggctgggaacacact	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40295514	T	T	40295514	3	4	9	1	0	0	0	0	1	0	0	0	5039	1130	39	1	3446	1	EIF2AK4	15	40295514	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	585	40295514	62235878	14639	22790											
BMF	90427	broad.mit.edu	37	chr15	40397956	40397956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtcccctcttttccccCagtctctatgggaggagtct	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40397956	A	A	40397956	1	1	9	0	1	0	0	0	0	0	0	0	1460	609	21	2		2	BMF	15	40397956	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	102442	40397956	62133436	14640	22791											
BUB1B	701	broad.mit.edu	37	chr15	40476063	40476063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaagagctccaatcatcCgtgtaggaggtgctctcaag	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40476063	A	A	40476063	3	1	9	1	0	0	0	0	1	0	0	0	1581	652	23	1	752	1	BUB1B	15	40476063	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78107	40476063	62055329	14641	22792											
PAK6	56924	broad.mit.edu	37	chr15	40564365	40564365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggccagcccctgcctccGggaaggttattccaaatgct	12	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40564365	T	T	40564365	1	4	9	0	1	0	0	0	0	0	0	0	11498	1131	39	1		1	PAK6	15	40564365	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	88302	40564365	61967027	14642	22793											
PLCB2	5330	broad.mit.edu	37	chr15	40591100	40591100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagttaagccgggagtccCgctgtttctggttgatgaat	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40591100	A	A	40591100	3	1	9	1	0	0	0	0	1	0	0	0	12123	652	23	1	2904	1	PLCB2	15	40591100	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26735	40591100	61940292	14643	22794											
C15orf52	388115	broad.mit.edu	37	chr15	40631057	40631057	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatctcgttggtcactctGggtccacaggtaccccttgc	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40631057	T	T	40631057	2	4	9	1	0	0	0	0	0	0	0	1	1813	1335	47	2		2	C15orf52	15	40631057	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39957	40631057	61900335	14644	22795											
DISP2	85455	broad.mit.edu	37	chr15	40656367	40656367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaccccacctccaccccCaacacacgccctctgcaaga	3	24	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656367	A	A	40656367	1	1	9	0	1	0	0	0	0	0	0	0	4580	609	21	2		2	DISP2	15	40656367	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	25310	40656367	61875025	14645	22796											
DISP2	85455	broad.mit.edu	37	chr15	40657869	40657869	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcatgtccacctcctcGggcagcctatggaacctgca	10	14	1	0	rs150813739		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40657869	T	T	40657869	2	4	9	1	0	0	0	0	0	0	0	1	4580	1103	39	1		1	DISP2	15	40657869	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1502	40657869	61873523	14646	22797											
C15orf23	90417	broad.mit.edu	37	chr15	40684143	40684143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttactacattgtgctttcCtcttagttgctgttagaaac	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40684143	A	A	40684143	1	1	9	0	1	0	0	0	0	0	0	0	1798	696	24	2		2	C15orf23	15	40684143	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26274	40684143	61847249	14647	22798											
BAHD1	22893	broad.mit.edu	37	chr15	40750677	40750677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactccatgacacacactcGgagaaagtcccttcccatgc	7	15	0	2	rs73387101	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40750677	T	T	40750677	3	4	9	1	0	0	0	0	1	0	0	0	1302	1116	39	1	16	1	BAHD1	15	40750677	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66534	40750677	61780715	14648	22799											
BAHD1	22893	broad.mit.edu	37	chr15	40750705	40750705	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttcccatgctgagttcGggcctcactggccgccgaga	11	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40750705	T	T	40750705	2	4	9	1	0	0	0	0	0	0	0	1	1302	1103	39	1		1	BAHD1	15	40750705	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28	40750705	61780687	14649	22800											
C15orf57	90416	broad.mit.edu	37	chr15	40854951	40854951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaacttcaatatgcttcCctagagccgtcaaacttacc	5	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40854951	A	A	40854951	1	1	9	0	1	0	0	0	0	0	0	0	1818	638	22	2		2	C15orf57	15	40854951	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	104246	40854951	61676441	14650	22801											
RPUSD2	27079	broad.mit.edu	37	chr15	40863922	40863922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaagccttcctccattccCgttcacccctgtggccgctt	7	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40863922	A	A	40863922	2	1	9	1	0	0	0	0	0	0	0	1	13778	639	23	1		1	RPUSD2	15	40863922	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8971	40863922	61667470	14651	22802											
FAM82A2	55177	broad.mit.edu	37	chr15	41029270	41029270	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgttggtcaggctgtctcGaactcccgacttcaggtgat	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41029270	T	T	41029270	1	4	9	0	1	0	0	0	0	0	0	0	5684	1073	37	3		3	FAM82A2	15	41029270	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	165348	41029270	61502122	14652	22803											
SPINT1	6692	broad.mit.edu	37	chr15	41145316	41145316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatctcactttctctcccCgccagggtctgggatcccca	7	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41145316	A	A	41145316	1	1	9	0	1	0	0	0	0	0	0	0	15186	667	23	1		1	SPINT1	15	41145316	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	116046	41145316	61386076	14653	22804											
SPINT1	6692	broad.mit.edu	37	chr15	41148138	41148138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgcaaggagagcatccCgcgctggtactacaacccct	9	15	1	1	rs142750993	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41148138	A	A	41148138	3	1	9	1	0	0	0	0	1	0	0	0	15186	652	23	1	1244	1	SPINT1	15	41148138	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2822	41148138	61383254	14654	22805											
SPINT1	6692	broad.mit.edu	37	chr15	41149134	41149134	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccactaccgaggacacGgagcacctggtctataacca	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41149134	T	T	41149134	2	4	9	1	0	0	0	0	0	0	0	1	15186	1103	39	1		1	SPINT1	15	41149134	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	996	41149134	61382258	14655	22806											
VPS18	57617	broad.mit.edu	37	chr15	41192167	41192167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgggcctacactgagcGggctgtcttccgctaccacg	13	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41192167	T	T	41192167	3	4	9	1	0	0	0	0	1	0	0	0	17321	1116	39	1	1165	1	VPS18	15	41192167	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43033	41192167	61339225	14656	22807											
VPS18	57617	broad.mit.edu	37	chr15	41192607	41192607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccttcctcagcagccccCgccacaaagagtggctcttt	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41192607	A	A	41192607	3	1	9	1	0	0	0	0	1	0	0	0	17321	652	23	1	1605	1	VPS18	15	41192607	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	440	41192607	61338785	14657	22808											
VPS18	57617	broad.mit.edu	37	chr15	41192838	41192838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatccgtcacatccccCgccagcttgtagatgcctgg	8	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41192838	A	A	41192838	3	1	9	1	0	0	0	0	1	0	0	0	17321	652	23	1	1836	1	VPS18	15	41192838	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	231	41192838	61338554	14658	22809											
DLL4	54567	broad.mit.edu	37	chr15	41227131	41227131	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccactgcctgtgtcctccGggctactatggcctgcattg	10	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41227131	T	T	41227131	2	4	9	1	0	0	0	0	0	0	0	1	4608	1103	39	1		1	DLL4	15	41227131	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	34293	41227131	61304261	14659	22810											
INO80	54617	broad.mit.edu	37	chr15	41371903	41371903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcttttgccctacctccCgcatttcctcatccaacttc	3	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41371903	A	A	41371903	3	1	9	1	0	0	0	0	1	0	0	0	7816	652	23	1	3655	1	INO80	15	41371903	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144772	41371903	61159489	14660	22811											
INO80	54617	broad.mit.edu	37	chr15	41371979	41371979	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgctccttctctactttctCatatttcttccagtacagaa	4	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41371979	A	A	41371979	4	1	9	1	0	0	0	0	0	1	0	0	7816	835	29	3	3731	3	INO80	15	41371979	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	41371979	61159413	14661	22812											
EXD1	161829	broad.mit.edu	37	chr15	41508947	41508947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggctcacatacatttaGgtcttcaactttcattttct	5	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41508947	T	T	41508947	3	4	9	1	0	0	0	0	1	0	0	0	5339	991	35	2	1443	2	EXD1	15	41508947	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	136968	41508947	61022445	14662	22813											
NDUFAF1	51103	broad.mit.edu	37	chr15	41680677	41680677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcatgctgaacatccCggattcttcctcgattagag	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41680677	A	A	41680677	3	1	9	1	0	0	0	0	1	0	0	0	10369	652	23	1	188	1	NDUFAF1	15	41680677	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	171730	41680677	60850715	14663	22814											
NDUFAF1	51103	broad.mit.edu	37	chr15	41688723	41688723	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgcacagtacccacttcGggtagactccccgtcctgag	9	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41688723	T	T	41688723	2	4	9	1	0	0	0	0	0	0	0	1	10369	1124	39	1		1	NDUFAF1	15	41688723	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8046	41688723	60842669	14664	22815											
RTF1	23168	broad.mit.edu	37	chr15	41770784	41770784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaccaacagatggatccCtttactcggcggcagtgcaa	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41770784	A	A	41770784	2	1	9	1	0	0	0	0	0	0	0	1	13832	668	24	2		2	RTF1	15	41770784	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82061	41770784	60760608	14665	22816											
LTK	4058	broad.mit.edu	37	chr15	41796871	41796871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggaaccaagtgaggccCgtcaggtgtagcctcccctc	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41796871	A	A	41796871	1	1	9	0	1	0	0	0	0	0	0	0	9167	667	23	1		1	LTK	15	41796871	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26087	41796871	60734521	14666	22817											
RPAP1	26015	broad.mit.edu	37	chr15	41819615	41819615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgggaaagaagctgtccCtttaccttgatgacatcatg	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41819615	A	A	41819615	1	1	9	0	1	0	0	0	0	0	0	0	13652	696	24	2		2	RPAP1	15	41819615	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22744	41819615	60711777	14667	22818											
RPAP1	26015	broad.mit.edu	37	chr15	41819638	41819638	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttgatgacatcatgtcGggccaggtcaggtggaggcc	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41819638	T	T	41819638	2	4	9	1	0	0	0	0	0	0	0	1	13652	1124	39	1		1	RPAP1	15	41819638	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	41819638	60711754	14668	22819											
RPAP1	26015	broad.mit.edu	37	chr15	41823347	41823347	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcagaggctgtctctcCtgtttgctcttgcgtgtggc	11	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41823347	A	A	41823347	4	1	9	1	0	0	0	0	0	1	0	0	13652	690	24	2	3440	2	RPAP1	15	41823347	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3709	41823347	60708045	14669	22820											
RPAP1	26015	broad.mit.edu	37	chr15	41829163	41829163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaacatcaccacatccCgatggtcctggagcggaggc	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41829163	A	A	41829163	3	1	9	1	0	0	0	0	1	0	0	0	13652	652	23	1	4116	1	RPAP1	15	41829163	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5816	41829163	60702229	14670	22821											
TYRO3	7301	broad.mit.edu	37	chr15	41862415	41862415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaccttggagctgaccCcaaatcctgggttttccttt	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41862415	A	A	41862415	1	1	9	0	1	0	0	0	0	0	0	0	16940	638	22	2		2	TYRO3	15	41862415	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33252	41862415	60668977	14671	22822											
TYRO3	7301	broad.mit.edu	37	chr15	41862463	41862463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgacagtgtcatggccCggggagagccagccgttcac	13	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41862463	A	A	41862463	2	1	9	1	0	0	0	0	0	0	0	1	16940	643	23	1		1	TYRO3	15	41862463	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	41862463	60668929	14672	22823											
TYRO3	7301	broad.mit.edu	37	chr15	41865973	41865973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacaactacctcattggcGggaaccgcctgaaacagcct	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41865973	T	T	41865973	3	4	9	1	0	0	0	0	1	0	0	0	16940	1116	39	1	2312	1	TYRO3	15	41865973	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3510	41865973	60665419	14673	22824											
MGA	23269	broad.mit.edu	37	chr15	41961507	41961507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatcgttataagtggaatGgtcgttggtgggaacctagt	13	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41961507	T	T	41961507	3	4	9	1	0	0	0	0	1	0	0	0	9633	1348	47	2	417	2	MGA	15	41961507	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95534	41961507	60569885	14674	22825											
MGA	23269	broad.mit.edu	37	chr15	41961528	41961528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgttggtgggaacctagtGggaaggctgaacctcatgtt	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41961528	T	T	41961528	3	4	9	1	0	0	0	0	1	0	0	0	9633	1348	47	2	438	2	MGA	15	41961528	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	41961528	60569864	14675	22826											
MGA	23269	broad.mit.edu	37	chr15	41961551	41961551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgaacctcatgttttGgggagggttttcattcatcc	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41961551	T	T	41961551	3	4	9	1	0	0	0	0	1	0	0	0	9633	1339	47	2	461	2	MGA	15	41961551	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23	41961551	60569841	14676	22827											
MGA	23269	broad.mit.edu	37	chr15	41988317	41988317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactcccgtgtagcctcacCgttagaccagaacggaagct	10	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41988317	A	A	41988317	3	1	9	1	0	0	0	0	1	0	0	0	9633	652	23	1	1115	1	MGA	15	41988317	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26766	41988317	60543075	14677	22828											
MGA	23269	broad.mit.edu	37	chr15	42028505	42028505	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaactgggaggaagatcGgaacaagattttgagcatct	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42028505	T	T	42028505	3	4	9	1	0	0	0	0	1	0	0	0	9633	1116	39	1	4089	1	MGA	15	42028505	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40188	42028505	60502887	14678	22829											
MGA	23269	broad.mit.edu	37	chr15	42041265	42041265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattggaagtcttgatatGggcagtcatgatttaaaaat	9	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42041265	T	T	42041265	1	4	9	0	1	0	0	0	0	0	0	0	9633	1363	47	2		2	MGA	15	42041265	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12760	42041265	60490127	14679	22830											
MGA	23269	broad.mit.edu	37	chr15	42042400	42042400	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgtaagaaagaggcagacGagcagttaattaaagaaaca	10	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42042400	T	T	42042400	4	4	9	1	0	0	0	0	0	1	0	0	9633	1059	37	3	6657	3	MGA	15	42042400	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1135	42042400	60488992	14680	22831											
MAPKBP1	23005	broad.mit.edu	37	chr15	42092083	42092083	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggacttgcctgtgacccCcgatcaggtttagttgctta	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42092083	A	A	42092083	2	1	9	1	0	0	0	0	0	0	0	1	9384	610	22	2		2	MAPKBP1	15	42092083	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49683	42092083	60439309	14681	22832											
MAPKBP1	23005	broad.mit.edu	37	chr15	42110096	42110096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtagcctgtttgctgctGggggtagctcccagagagtg	17	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42110096	T	T	42110096	1	4	9	0	1	0	0	0	0	0	0	0	9384	1363	47	2		2	MAPKBP1	15	42110096	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18013	42110096	60421296	14682	22833											
MAPKBP1	23005	broad.mit.edu	37	chr15	42111546	42111546	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaacttccagcactgccCgtccttgccaagagtaccaa	8	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42111546	A	A	42111546	2	1	9	1	0	0	0	0	0	0	0	1	9384	639	23	1		1	MAPKBP1	15	42111546	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1450	42111546	60419846	14683	22834											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42127001	42127001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccgctccacttctaccGggactgggtctgccccaaca	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42127001	T	T	42127001	3	4	9	1	0	0	0	0	1	0	0	0	8025	1116	39	1	134	1	JMJD7-PLA2G4B	15	42127001	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15455	42127001	60404391	14684	22835											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42137955	42137955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaggcttcctgagtccCgcatctgcttcttagaaggt	11	10	2	4	rs140808455		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42137955	A	A	42137955	3	1	9	1	0	0	0	0	1	0	0	0	8025	652	23	1	2248	1	JMJD7-PLA2G4B	15	42137955	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10954	42137955	60393437	14685	22836											
SPTBN5	51332	broad.mit.edu	37	chr15	42166342	42166342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaatcatggcaagaccccCagggtcaaaatagctggggc	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42166342	A	A	42166342	1	1	9	0	1	0	0	0	0	0	0	0	15240	609	21	2		2	SPTBN5	15	42166342	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28387	42166342	60365050	14686	22837											
SPTBN5	51332	broad.mit.edu	37	chr15	42166531	42166531	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggcaccattcaagcactCggtatagctggtggggctgc	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42166531	A	A	42166531	4	1	9	1	0	0	0	0	0	1	0	0	15240	893	31	3	6556	3	SPTBN5	15	42166531	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	189	42166531	60364861	14687	22838											
SPTBN5	51332	broad.mit.edu	37	chr15	42178458	42178458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcgagtctggaaaatccCgcgcctccagctgcatctgc	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42178458	A	A	42178458	3	1	9	1	0	0	0	0	1	0	0	0	15240	652	23	1	10277	1	SPTBN5	15	42178458	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11927	42178458	60352934	14688	22839											
EHD4	30844	broad.mit.edu	37	chr15	42201870	42201870	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacctctgccctctgccCgtgacattgtagtgggctcc	10	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42201870	A	A	42201870	1	1	9	0	1	0	0	0	0	0	0	0	5020	667	23	1		1	EHD4	15	42201870	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23412	42201870	60329522	14689	22840											
EHD4	30844	broad.mit.edu	37	chr15	42211680	42211680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgttcagcacgacacGgatcttgtcgtcctggcccc	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42211680	T	T	42211680	3	4	9	1	0	0	0	0	1	0	0	0	5020	1116	39	1	985	1	EHD4	15	42211680	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9810	42211680	60319712	14690	22841											
EHD4	30844	broad.mit.edu	37	chr15	42245962	42245962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcttgctggtccttacCgattcaggaaagcgtttcca	11	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42245962	A	A	42245962	3	1	9	1	0	0	0	0	1	0	0	0	5020	666	23	1	1232	1	EHD4	15	42245962	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34282	42245962	60285430	14691	22842											
PLA2G4E	123745	broad.mit.edu	37	chr15	42282519	42282519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagacaatctggaccccCgcagccacttcctggctcct	9	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42282519	A	A	42282519	1	1	9	0	1	0	0	0	0	0	0	0	12100	667	23	1		1	PLA2G4E	15	42282519	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36557	42282519	60248873	14692	22843											
PLA2G4E	123745	broad.mit.edu	37	chr15	42302266	42302266	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcattgctctgctgataGggagactcaccaggaacctg	11	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42302266	T	T	42302266	1	4	9	0	1	0	0	0	0	0	0	0	12100	1015	35	2		2	PLA2G4E	15	42302266	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19747	42302266	60229126	14693	22844											
PLA2G4D	283748	broad.mit.edu	37	chr15	42364547	42364547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagagggttctgacccCgttccagggcggctctctgt	16	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42364547	A	A	42364547	3	1	9	1	0	0	0	0	1	0	0	0	12099	652	23	1	1123	1	PLA2G4D	15	42364547	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62281	42364547	60166845	14694	22845											
PLA2G4D	283748	broad.mit.edu	37	chr15	42373957	42373957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctcccctcctgcatgccCgcctctcactgtccccacag	6	23	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42373957	A	A	42373957	1	1	9	0	1	0	0	0	0	0	0	0	12099	667	23	1		1	PLA2G4D	15	42373957	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9410	42373957	60157435	14695	22846											
PLA2G4D	283748	broad.mit.edu	37	chr15	42377259	42377259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccaagcgtctgctctGgggcccctcccctaagcctg	9	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42377259	T	T	42377259	1	4	9	0	1	0	0	0	0	0	0	0	12099	1363	47	2		2	PLA2G4D	15	42377259	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3302	42377259	60154133	14696	22847											
PLA2G4D	283748	broad.mit.edu	37	chr15	42379460	42379460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcatgggggtccagccCgttcacaagggagtggccag	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42379460	A	A	42379460	1	1	9	0	1	0	0	0	0	0	0	0	12099	667	23	1		1	PLA2G4D	15	42379460	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2201	42379460	60151932	14697	22848											
PLA2G4F	255189	broad.mit.edu	37	chr15	42437756	42437756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggtgtgggaggggctcGgggtcgctaccctcacctgt	17	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42437756	T	T	42437756	1	4	9	0	1	0	0	0	0	0	0	0	12101	1131	39	1		1	PLA2G4F	15	42437756	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	58296	42437756	60093636	14698	22849											
PLA2G4F	255189	broad.mit.edu	37	chr15	42438340	42438340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctgcaaaatcttcccCactcaagttggtgcggacgt	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42438340	A	A	42438340	3	1	9	1	0	0	0	0	1	0	0	0	12101	594	21	2	1058	2	PLA2G4F	15	42438340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	584	42438340	60093052	14699	22850											
VPS39	23339	broad.mit.edu	37	chr15	42480026	42480026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttactgccacacacatcCgtaacacctcctcaccggtc	4	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42480026	A	A	42480026	3	1	9	1	0	0	0	0	1	0	0	0	17336	652	23	1	2336	1	VPS39	15	42480026	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41686	42480026	60051366	14700	22851											
TMEM87A	25963	broad.mit.edu	37	chr15	42519100	42519100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgtctacccacagctccCgccagtcctacaatacaggg	7	17	1	0	rs137984068		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42519100	A	A	42519100	3	1	9	1	0	0	0	0	1	0	0	0	16333	652	23	1	384	1	TMEM87A	15	42519100	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39074	42519100	60012292	14701	22852											
TMEM87A	25963	broad.mit.edu	37	chr15	42531877	42531878	+	Missense_Mutation	DNP	GG	TT	TT													aagtcacttacaatcatcaaGggatagtcttcaagtgtgag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42531878	TT	TT	42531877	3	4	9	1	0	0	0	0	1	0	0	0	16333	987	35	2	1044	2	TMEM87A	15	42531877	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	12777	42531877	59999515	14702	22853											
TMEM87A	25963	broad.mit.edu	37	chr15	42553156	42553156	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatccccaaatatacttacGgttttgtctccaataaaggt	5	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42553156	T	T	42553156	2	4	9	1	0	0	0	0	0	0	0	1	16333	1130	39	1		1	TMEM87A	15	42553156	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	21279	42553156	59978236	14703	22854											
GANC	2595	broad.mit.edu	37	chr15	42632908	42632908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgtgggtagagttccCtgatgaactaaagacttttg	11	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42632908	A	A	42632908	3	1	9	1	0	0	0	0	1	0	0	0	6296	681	24	2	2178	2	GANC	15	42632908	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79752	42632908	59898484	14704	22855											
CAPN3	825	broad.mit.edu	37	chr15	42652166	42652166	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcaattttcctattatcGgagtgaaagagaagacattc	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42652166	T	T	42652166	4	4	9	1	0	0	0	0	0	1	0	0	2654	1117	39	1	217	1	CAPN3	15	42652166	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19258	42652166	59879226	14705	22856											
CAPN3	825	broad.mit.edu	37	chr15	42695960	42695960	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagttgaaaataccatctcCgtggatcggccagtggtgag	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42695960	A	A	42695960	2	1	9	1	0	0	0	0	0	0	0	1	2654	639	23	1		1	CAPN3	15	42695960	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43794	42695960	59835432	14706	22857											
CAPN3	825	broad.mit.edu	37	chr15	42702149	42702149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggacctgaagacacacGggttcacactggagtcctgc	11	12	1	2	rs140425651		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42702149	T	T	42702149	3	4	9	1	0	0	0	0	1	0	0	0	2654	1116	39	1	2197	1	CAPN3	15	42702149	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6189	42702149	59829243	14707	22858											
ZFP106	64397	broad.mit.edu	37	chr15	42720183	42720183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactgttttcaagtgcatGggaagtaagccttttctcct	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42720183	T	T	42720183	1	4	9	0	1	0	0	0	0	0	0	0	17763	1363	47	2		2	ZFP106	15	42720183	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18034	42720183	59811209	14708	22859											
ZFP106	64397	broad.mit.edu	37	chr15	42727644	42727644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaagggcagcattcttccCggaggtctgagtaaccagga	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42727644	A	A	42727644	3	1	9	1	0	0	0	0	1	0	0	0	17763	652	23	1	937	1	ZFP106	15	42727644	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7461	42727644	59803748	14709	22860											
ZFP106	64397	broad.mit.edu	37	chr15	42731444	42731444	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctaggacttccagagacGagtcactatctggctcatct	8	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42731444	T	T	42731444	4	4	9	1	0	0	0	0	0	1	0	0	17763	1059	37	3	1437	3	ZFP106	15	42731444	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3800	42731444	59799948	14710	22861											
ZFP106	64397	broad.mit.edu	37	chr15	42741972	42741972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaaagcagcacacacctgGgtaagcctttgcccagctct	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42741972	T	T	42741972	3	4	9	1	0	0	0	0	1	0	0	0	17763	1232	43	2	3294	2	ZFP106	15	42741972	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10528	42741972	59789420	14711	22862											
ZFP106	64397	broad.mit.edu	37	chr15	42742028	42742028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgctgaatgacctgttcCcagttgacatttctccgaga	8	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42742028	A	A	42742028	3	1	9	1	0	0	0	0	1	0	0	0	17763	624	22	2	3350	2	ZFP106	15	42742028	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	42742028	59789364	14712	22863											
ZFP106	64397	broad.mit.edu	37	chr15	42742138	42742138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaatattgcgaatgcggcGggcactattgaggtttggct	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42742138	T	T	42742138	3	4	9	1	0	0	0	0	1	0	0	0	17763	1116	39	1	3460	1	ZFP106	15	42742138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	110	42742138	59789254	14713	22864											
ZFP106	64397	broad.mit.edu	37	chr15	42742466	42742466	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctttctggcgaactatGggattacatggggaagtgga	14	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42742466	T	T	42742466	2	4	9	1	0	0	0	0	0	0	0	1	17763	1335	47	2		2	ZFP106	15	42742466	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	328	42742466	59788926	14714	22865											
ZFP106	64397	broad.mit.edu	37	chr15	42744079	42744079	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcttggtaaggaattcGgtcttctcgtctccattggg	11	9	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42744079	T	T	42744079	2	4	9	1	0	0	0	0	0	0	0	1	17763	1124	39	1		1	ZFP106	15	42744079	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1613	42744079	59787313	14715	22866											
ZFP106	64397	broad.mit.edu	37	chr15	42744097	42744097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtcttctcgtctccattGgggtcgtctgtcatcagagt	11	11	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42744097	T	T	42744097	3	4	9	1	0	0	0	0	1	0	0	0	17763	1357	47	2	5419	2	ZFP106	15	42744097	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18	42744097	59787295	14716	22867											
SNAP23	8773	broad.mit.edu	37	chr15	42820530	42820530	+	Frame_Shift_Del	DEL	A	-	-													gtggagaaaactcaccttgcAatgtagtatctaaacagcca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42820530	-	-	42820530	7	5	9	1	0	1	0	1	0	0	0	0	14943	130	5	0	355	0	SNAP23	15	42820530	Frame_Shift_Del	DEL	A	TCGA-05-4396-01A-21D-1855-08	76433	42820530	59710862	14717	22868											
HAUS2	55142	broad.mit.edu	37	chr15	42855953	42855953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctctttcagatatatGgtacatttgctggagttggc	9	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42855953	T	T	42855953	3	4	9	1	0	0	0	0	1	0	0	0	7032	1348	47	2	414	2	HAUS2	15	42855953	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35423	42855953	59675439	14718	22869											
CDAN1	146059	broad.mit.edu	37	chr15	43023432	43023432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctacgtctgactcccCgtcttcatcattgggctcat	7	15	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43023432	A	A	43023432	3	1	9	1	0	0	0	0	1	0	0	0	3084	652	23	1	1914	1	CDAN1	15	43023432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	167479	43023432	59507960	14719	22870											
TTBK2	146057	broad.mit.edu	37	chr15	43044712	43044712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatagttctccatttctaGgggtgattttctctctcttg	8	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43044712	T	T	43044712	3	4	9	1	0	0	0	0	1	0	0	0	16803	1000	35	2	1010	2	TTBK2	15	43044712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21280	43044712	59486680	14720	22871											
TTBK2	146057	broad.mit.edu	37	chr15	43044862	43044862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatctgaccttcaacatgtGggtcaatgtctctggaagaa	9	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43044862	T	T	43044862	3	4	9	1	0	0	0	0	1	0	0	0	16803	1348	47	2	1160	2	TTBK2	15	43044862	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150	43044862	59486530	14721	22872											
TTBK2	146057	broad.mit.edu	37	chr15	43075656	43075656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttgtttttgttggcatcCatctcttcccaaacatcctt	4	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43075656	A	A	43075656	3	1	9	1	0	0	0	0	1	0	0	0	16803	594	21	2	2596	2	TTBK2	15	43075656	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30794	43075656	59455736	14722	22873											
TTBK2	146057	broad.mit.edu	37	chr15	43075688	43075688	+	Missense_Mutation	SNP	G	T	T													aacatccttctcctggggacGggggtgtcccagagatccag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43075688	T	T	43075688	3	4	9	1	0	0	0	0	1	0	0	0	16803	1116	39	1	2628	1	TTBK2	15	43075688	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	43075688	59455704	14723	22874	152	2									
TTBK2	146057	broad.mit.edu	37	chr15	43075698	43075698	+	Silent	SNP	C	A	A													tcctggggacgggggtgtccCagagatccaggcaatttatc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43075698	A	A	43075698	2	1	9	1	0	0	0	0	0	0	0	1	16803	581	21	2		2	TTBK2	15	43075698	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10	43075698	59455694	14724	22875	152	2									
TTBK2	146057	broad.mit.edu	37	chr15	43075779	43075779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgttcatctggaaatacCtcatctgtattttctcgaag	7	9	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43075779	A	A	43075779	3	1	9	1	0	0	0	0	1	0	0	0	16803	680	24	2	2719	2	TTBK2	15	43075779	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	43075779	59455613	14725	22876											
TTBK2	146057	broad.mit.edu	37	chr15	43094586	43094586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaccttgtaggacttccGggtcaccctgatggacatgg	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43094586	T	T	43094586	1	4	9	0	1	0	0	0	0	0	0	0	16803	1131	39	1		1	TTBK2	15	43094586	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18807	43094586	59436806	14726	22877											
UBR1	197131	broad.mit.edu	37	chr15	43244543	43244543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagctccaacctcttcccCgttcacaatttcctggcagc	6	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43244543	A	A	43244543	3	1	9	1	0	0	0	0	1	0	0	0	17027	652	23	1	322	1	UBR1	15	43244543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149957	43244543	59286849	14727	22878											
UBR1	197131	broad.mit.edu	37	chr15	43296094	43296094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtataagttccatatgcCaagtctggatccatgaaaag	8	9	1	1	rs144681428		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43296094	A	A	43296094	3	1	9	1	0	0	0	0	1	0	0	0	17027	593	21	2	1867	2	UBR1	15	43296094	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51551	43296094	59235298	14728	22879											
UBR1	197131	broad.mit.edu	37	chr15	43317076	43317076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaatctgtgtctattgccCgctcaaatacggtcctgaga	9	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43317076	A	A	43317076	3	1	9	1	0	0	0	0	1	0	0	0	17027	652	23	1	2651	1	UBR1	15	43317076	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20982	43317076	59214316	14729	22880											
UBR1	197131	broad.mit.edu	37	chr15	43352305	43352305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctcccgctttaacagccCgacgaccctaattatagaca	6	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43352305	A	A	43352305	3	1	9	1	0	0	0	0	1	0	0	0	17027	652	23	1	4607	1	UBR1	15	43352305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35229	43352305	59179087	14730	22881											
TMEM62	80021	broad.mit.edu	37	chr15	43423509	43423509	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatagtggctttgatttGggattatatgcacccctttc	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43423509	T	T	43423509	1	4	9	0	1	0	0	0	0	0	0	0	16312	1363	47	2		2	TMEM62	15	43423509	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	71204	43423509	59107883	14731	22882											
CCNDBP1	23582	broad.mit.edu	37	chr15	43483888	43483888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctaggtaagcgggatcccCacttgaaacatctgagcagc	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43483888	A	A	43483888	1	1	9	0	1	0	0	0	0	0	0	0	2949	609	21	2		2	CCNDBP1	15	43483888	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60379	43483888	59047504	14732	22883											
EPB42	2038	broad.mit.edu	37	chr15	43507464	43507464	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcactccaccactttcGgtcccccagactggaaattg	7	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43507464	T	T	43507464	2	4	9	1	0	0	0	0	0	0	0	1	5200	1124	39	1		1	EPB42	15	43507464	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23576	43507464	59023928	14733	22884											
EPB42	2038	broad.mit.edu	37	chr15	43512917	43512917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttataccaccatctcccCgcctaccatccatcccactt	2	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43512917	A	A	43512917	1	1	9	0	1	0	0	0	0	0	0	0	5200	667	23	1		1	EPB42	15	43512917	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5453	43512917	59018475	14734	22885											
TGM7	116179	broad.mit.edu	37	chr15	43579779	43579779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatacaccacgtcgttcCgctgggaacagtctttggcc	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43579779	A	A	43579779	3	1	9	1	0	0	0	0	1	0	0	0	15958	652	23	1	1521	1	TGM7	15	43579779	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66862	43579779	58951613	14735	22886											
TGM7	116179	broad.mit.edu	37	chr15	43584182	43584182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaatagtgttacctgccCgtagttccagggccaggagg	15	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43584182	A	A	43584182	3	1	9	1	0	0	0	0	1	0	0	0	15958	652	23	1	1619	1	TGM7	15	43584182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4403	43584182	58947210	14736	22887											
TUBGCP4	27229	broad.mit.edu	37	chr15	43697357	43697357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctttgaaggtagtcttGggaaagcatgacacttaata	9	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43697357	T	T	43697357	1	4	9	0	1	0	0	0	0	0	0	0	16894	1363	47	2		2	TUBGCP4	15	43697357	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	113175	43697357	58834035	14737	22888											
TP53BP1	7158	broad.mit.edu	37	chr15	43748336	43748336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttctgtttctgcagtccCtgatttcagatctccttcat	7	11	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43748336	A	A	43748336	3	1	9	1	0	0	0	0	1	0	0	0	16507	681	24	2	3531	2	TP53BP1	15	43748336	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50979	43748336	58783056	14738	22889											
MAP1A	4130	broad.mit.edu	37	chr15	43821949	43821949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgaccttgacttcttcCgtcgagtgcgtgcatcctac	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43821949	A	A	43821949	3	1	9	1	0	0	0	0	1	0	0	0	9319	652	23	1	8143	1	MAP1A	15	43821949	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	73613	43821949	58709443	14739	22890											
CATSPER2	117155	broad.mit.edu	37	chr15	43927553	43927553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagttcacatacatactcCtaacctgtcctctattttgc	3	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43927553	A	A	43927553	1	1	9	0	1	0	0	0	0	0	0	0	2714	696	24	2		2	CATSPER2	15	43927553	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	105604	43927553	58603839	14740	22891											
CATSPER2	117155	broad.mit.edu	37	chr15	43927940	43927940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacctctggatgatctgcCgcttgaacatgtcagctttg	10	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43927940	A	A	43927940	3	1	9	1	0	0	0	0	1	0	0	0	2714	652	23	1	506	1	CATSPER2	15	43927940	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	387	43927940	58603452	14741	22892											
CATSPER2	117155	broad.mit.edu	37	chr15	43931920	43931920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgagagacctcagcaccCggcagatcctcagaagctga	11	12	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43931920	A	A	43931920	3	1	9	1	0	0	0	0	1	0	0	0	2714	652	23	1	986	1	CATSPER2	15	43931920	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3980	43931920	58599472	14742	22893											
CATSPER2	117155	broad.mit.edu	37	chr15	43940220	43940220	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacgaatggcatcagctcGgggaagctgcatctgctctt	12	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43940220	T	T	43940220	2	4	9	1	0	0	0	0	0	0	0	1	2714	1124	39	1		1	CATSPER2	15	43940220	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8300	43940220	58591172	14743	22894											
CKMT1A	548596	broad.mit.edu	37	chr15	43990920	43990920	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacactgctgccacaggcGgtgtctttgatatttctaat	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43990920	T	T	43990920	3	4	9	1	0	0	0	0	1	0	0	0	3480	1116	39	1	1123	1	CKMT1A	15	43990920	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50700	43990920	58540472	14744	22895											
PDIA3	2923	broad.mit.edu	37	chr15	44037358	44037358	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccttcttgttggtaagcGgccatgtctgctaagaaaat	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44037358	T	T	44037358	1	4	9	0	1	0	0	0	0	0	0	0	11763	1131	39	1		1	PDIA3	15	44037358	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	46438	44037358	58494034	14745	22896											
PDIA3	2923	broad.mit.edu	37	chr15	44055349	44055349	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacttgagggataactacCgatttgcacatacgaatgtt	9	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44055349	A	A	44055349	2	1	9	1	0	0	0	0	0	0	0	1	11763	644	23	1		1	PDIA3	15	44055349	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17991	44055349	58476043	14746	22897											
PDIA3	2923	broad.mit.edu	37	chr15	44061820	44061820	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgtaagaacctggagccCaagtataaagaacttggcga	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44061820	G	G	44061820	2	3	9	1	0	0	0	0	0	0	0	1	11763	581	21	4		4	PDIA3	15	44061820	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6471	44061820	58469572	14747	22898											
ELL3	80237	broad.mit.edu	37	chr15	44066807	44066807	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcaccttcttgaactgaGgaactgtgttctaatctggg	9	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44066807	T	T	44066807	2	4	9	1	0	0	0	0	0	0	0	1	5106	987	35	2		2	ELL3	15	44066807	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4987	44066807	58464585	14748	22899											
ELL3	80237	broad.mit.edu	37	chr15	44066853	44066853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctcatcttcttgctccCaatcttctccctcttgtaaa	3	15	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44066853	A	A	44066853	3	1	9	1	0	0	0	0	1	0	0	0	5106	595	21	2	449	2	ELL3	15	44066853	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46	44066853	58464539	14749	22900											
MFAP1	4236	broad.mit.edu	37	chr15	44101969	44101969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccatgaagaaggcacccCggtgataatacttctgtaag	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44101969	A	A	44101969	3	1	9	1	0	0	0	0	1	0	0	0	9606	652	23	1	300	1	MFAP1	15	44101969	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35116	44101969	58429423	14750	22901											
WDR76	79968	broad.mit.edu	37	chr15	44131901	44131901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaccagcagctccaacacCgccgacattagtagcagatg	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44131901	A	A	44131901	3	1	9	1	0	0	0	0	1	0	0	0	17453	652	23	1	725	1	WDR76	15	44131901	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29932	44131901	58399491	14751	22902											
WDR76	79968	broad.mit.edu	37	chr15	44143306	44143306	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaacctaaagaagatGgagtttatgtttttcatccc	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44143306	T	T	44143306	4	4	9	1	0	0	0	0	0	1	0	0	17453	1349	47	2	1088	2	WDR76	15	44143306	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11405	44143306	58388086	14752	22903											
FRMD5	84978	broad.mit.edu	37	chr15	44166645	44166645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggaatgggcactgtccCgtaaggactctaggcctaga	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44166645	A	A	44166645	3	1	9	1	0	0	0	0	1	0	0	0	6113	652	23	1	565	1	FRMD5	15	44166645	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23339	44166645	58364747	14753	22904											
FRMD5	84978	broad.mit.edu	37	chr15	44198148	44198148	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcataatccccaatctcCgctttcaaaaggaaggtgga	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44198148	A	A	44198148	2	1	9	1	0	0	0	0	0	0	0	1	6113	666	23	1		1	FRMD5	15	44198148	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31503	44198148	58333244	14754	22905											
CASC4	113201	broad.mit.edu	37	chr15	44671944	44671944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtcatcaagcaatctccCatcttccaactggacaacct	4	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44671944	A	A	44671944	3	1	9	1	0	0	0	0	1	0	0	0	2688	594	21	2	885	2	CASC4	15	44671944	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	473796	44671944	57859448	14755	22906											
CTDSPL2	51496	broad.mit.edu	37	chr15	44778926	44778926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaactgttaactgtgatttGgattttttttaaaaaaatgc	6	3	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44778926	T	T	44778926	1	4	9	0	1	0	0	0	0	0	0	0	4040	1363	47	2		2	CTDSPL2	15	44778926	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	106982	44778926	57752466	14756	22907											
SPG11	80208	broad.mit.edu	37	chr15	44865019	44865019	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaacatctgcttatgtcCtgtacagagaggtgtgaaga	12	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44865019	A	A	44865019	5	1	9	1	0	0	0	0	0	0	1	0	15159	695	24	2	1158	2	SPG11	15	44865019	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	86093	44865019	57666373	14757	22908											
SPG11	80208	broad.mit.edu	37	chr15	44867083	44867083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcagaaagaggagcccCaccccttggcacataccttg	8	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44867083	A	A	44867083	1	1	9	0	1	0	0	0	0	0	0	0	15159	609	21	2		2	SPG11	15	44867083	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2064	44867083	57664309	14758	22909											
SORD	6652	broad.mit.edu	37	chr15	45360387	45360387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttgtttagggccaatcGggatggtcactttgctcgtg	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45360387	T	T	45360387	3	4	9	1	0	0	0	0	1	0	0	0	15047	1116	39	1	575	1	SORD	15	45360387	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	493304	45360387	57171005	14759	22910											
DUOX2	50506	broad.mit.edu	37	chr15	45397884	45397884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctccaggatgcgttccCgctgctgctttgtcacagcc	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45397884	A	A	45397884	3	1	9	1	0	0	0	0	1	0	0	0	4841	652	23	1	2423	1	DUOX2	15	45397884	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37497	45397884	57133508	14760	22911											
DUOX2	50506	broad.mit.edu	37	chr15	45399614	45399614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacagcgaccagcacgtccCgcagggtggtatttcggatg	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45399614	A	A	45399614	3	1	9	1	0	0	0	0	1	0	0	0	4841	652	23	1	3108	1	DUOX2	15	45399614	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1730	45399614	57131778	14761	22912											
DUOXA2	405753	broad.mit.edu	37	chr15	45408801	45408801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattacgccgcggagtacgCgaacgcactggagaaggggc	16	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45408801	A	A	45408801	3	1	9	1	0	0	0	0	1	0	0	0	4843	768	27	3	442	3	DUOXA2	15	45408801	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9187	45408801	57122591	14762	22913											
DUOXA1	90527	broad.mit.edu	37	chr15	45412824	45412824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtagtgtcccgccaggcGgtactggcggtataggccac	16	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45412824	T	T	45412824	3	4	9	1	0	0	0	0	1	0	0	0	4842	1116	39	1	951	1	DUOXA1	15	45412824	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4023	45412824	57118568	14763	22914											
DUOX1	53905	broad.mit.edu	37	chr15	45443343	45443343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcccagagtgagtgccCgctgttcccgcagcgacatt	10	16	1	2	rs144336578	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45443343	A	A	45443343	3	1	9	1	0	0	0	0	1	0	0	0	4840	652	23	1	2997	1	DUOX1	15	45443343	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30519	45443343	57088049	14764	22915											
DUOX1	53905	broad.mit.edu	37	chr15	45452994	45452994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccctgtattctgctatGggcatcgctaggtctgagca	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45452994	T	T	45452994	1	4	9	0	1	0	0	0	0	0	0	0	4840	1363	47	2		2	DUOX1	15	45452994	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9651	45452994	57078398	14765	22916											
DUOX1	53905	broad.mit.edu	37	chr15	45456989	45456989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaacaggtccggaagatcGgggtgtttagctgtggcccc	15	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45456989	T	T	45456989	3	4	9	1	0	0	0	0	1	0	0	0	4840	1116	39	1	4676	1	DUOX1	15	45456989	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3995	45456989	57074403	14766	22917											
SLC28A2	9153	broad.mit.edu	37	chr15	45556876	45556876	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggaggacagtgttttcGggcctaggtcttcaatttgt	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45556876	T	T	45556876	2	4	9	1	0	0	0	0	0	0	0	1	14646	1103	39	1		1	SLC28A2	15	45556876	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99887	45556876	56974516	14767	22918											
SLC28A2	9153	broad.mit.edu	37	chr15	45559642	45559642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatctgactgttttctcCgtgtttgtagacagaggcac	11	8	2	3	rs17222050		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45559642	A	A	45559642	1	1	9	0	1	0	0	0	0	0	0	0	14646	667	23	1		1	SLC28A2	15	45559642	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2766	45559642	56971750	14768	22919											
C15orf48	84419	broad.mit.edu	37	chr15	45723234	45723234	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcatgactgtggcggcGggtggagcctcatctttcgc	15	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45723234	T	T	45723234	2	4	9	1	0	0	0	0	0	0	0	1	1812	1103	39	1		1	C15orf48	15	45723234	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	163592	45723234	56808158	14769	22920											
SLC30A4	7782	broad.mit.edu	37	chr15	45779007	45779007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaggaacttttacattacCgatgacatttatcaaagaaa	5	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45779007	A	A	45779007	1	1	9	0	1	0	0	0	0	0	0	0	14671	667	23	1		1	SLC30A4	15	45779007	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55773	45779007	56752385	14770	22921											
SLC30A4	7782	broad.mit.edu	37	chr15	45781096	45781096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactctgtaccaaatctccCaaagcatgtacaaatgcagc	5	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45781096	A	A	45781096	3	1	9	1	0	0	0	0	1	0	0	0	14671	593	21	2	468	2	SLC30A4	15	45781096	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2089	45781096	56750296	14771	22922											
SLC30A4	7782	broad.mit.edu	37	chr15	45803403	45803403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatagccacaaagcaagcagGgtgagtatgatggcgcttag	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45803403	T	T	45803403	2	4	9	1	0	0	0	0	0	0	0	1	14671	1219	43	2		2	SLC30A4	15	45803403	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22307	45803403	56727989	14772	22923											
SQRDL	58472	broad.mit.edu	37	chr15	45965844	45965844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcgctcatcccaaaataGggtcgaattattcagttaag	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45965844	T	T	45965844	3	4	9	1	0	0	0	0	1	0	0	0	15247	1000	35	2	513	2	SQRDL	15	45965844	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	162441	45965844	56565548	14773	22924											
SQRDL	58472	broad.mit.edu	37	chr15	45965969	45965969	+	Frame_Shift_Del	DEL	C	-	-													gctggagcccctcagaagatCatgtacttatcagaagccta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45965969	-	-	45965969	7	5	9	1	0	1	0	1	0	0	0	0	15247	816	29	0	638	0	SQRDL	15	45965969	Frame_Shift_Del	DEL	C	TCGA-05-4396-01A-21D-1855-08	125	45965969	56565423	14774	22925											
SQRDL	58472	broad.mit.edu	37	chr15	45968356	45968356	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcttggagccattttcGgggttaagaagtatgcagat	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45968356	T	T	45968356	3	4	9	1	0	0	0	0	1	0	0	0	15247	1116	39	1	730	1	SQRDL	15	45968356	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2387	45968356	56563036	14775	22926											
SEMA6D	80031	broad.mit.edu	37	chr15	47873518	47873518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgacatagtgatttttaGgaacacatatgtcaccttat	7	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47873518	T	T	47873518	1	4	9	0	1	0	0	0	0	0	0	0	14155	1015	35	2		2	SEMA6D	15	47873518	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1905162	47873518	54657874	14776	22927											
SEMA6D	80031	broad.mit.edu	37	chr15	48052051	48052051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgatggtttcccagttgaGggcagtcagctttcctgaag	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48052051	T	T	48052051	3	4	9	1	0	0	0	0	1	0	0	0	14155	1000	35	2	58	2	SEMA6D	15	48052051	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178533	48052051	54479341	14777	22928											
SEMA6D	80031	broad.mit.edu	37	chr15	48060877	48060877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctaaactgacaagctctcGgaaatttgtagttcaagatg	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48060877	T	T	48060877	3	4	9	1	0	0	0	0	1	0	0	0	14155	1116	39	1	1974	1	SEMA6D	15	48060877	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8826	48060877	54470515	14778	22929											
SEMA6D	80031	broad.mit.edu	37	chr15	48063880	48063880	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcactcttcctaggacGggactaaagaggacgccgtc	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48063880	T	T	48063880	2	4	9	1	0	0	0	0	0	0	0	1	14155	1103	39	1		1	SEMA6D	15	48063880	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3003	48063880	54467512	14779	22930											
SLC24A5	283652	broad.mit.edu	37	chr15	48426735	48426735	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtttgctatctaatacGgtatgtaacaaaaccattca	7	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48426735	T	T	48426735	2	4	9	1	0	0	0	0	0	0	0	1	14583	1130	39	1		1	SLC24A5	15	48426735	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	362855	48426735	54104657	14780	22931											
SLC12A1	6557	broad.mit.edu	37	chr15	48541773	48541773	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattctgttacttttacagcGgaactgaacaccattgctcc	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48541773	T	T	48541773	2	4	9	1	0	0	0	0	0	0	0	1	14495	1130	39	1		1	SLC12A1	15	48541773	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	115038	48541773	53989619	14781	22932											
SLC12A1	6557	broad.mit.edu	37	chr15	48543902	48543902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtttgtcatcaactggtGggcagctgtcatcacctatg	10	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48543902	T	T	48543902	3	4	9	1	0	0	0	0	1	0	0	0	14495	1357	47	2	2031	2	SLC12A1	15	48543902	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2129	48543902	53987490	14782	22933											
SLC12A1	6557	broad.mit.edu	37	chr15	48559914	48559914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggtaaggctgcattgaGggaatgagcacagaggcaaa	14	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48559914	T	T	48559914	1	4	9	0	1	0	0	0	0	0	0	0	14495	1015	35	2		2	SLC12A1	15	48559914	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16012	48559914	53971478	14783	22934											
FBN1	2200	broad.mit.edu	37	chr15	48704815	48704815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctccgtttcctgcccCgtttggggtagccattgatc	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48704815	A	A	48704815	3	1	9	1	0	0	0	0	1	0	0	0	5759	652	23	1	446	1	FBN1	15	48704815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144901	48704815	53826577	14784	22935											
FBN1	2200	broad.mit.edu	37	chr15	48707882	48707882	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcatactggaagccggcGggacacatgcacttgtagct	12	10	1	0	rs138621371	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48707882	T	T	48707882	2	4	9	1	0	0	0	0	0	0	0	1	5759	1103	39	1		1	FBN1	15	48707882	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3067	48707882	53823510	14785	22936											
FBN1	2200	broad.mit.edu	37	chr15	48725103	48725103	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgagcacatatcccacGggacatttgcattcatatga	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48725103	T	T	48725103	2	4	9	1	0	0	0	0	0	0	0	1	5759	1103	39	1		1	FBN1	15	48725103	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17221	48725103	53806289	14786	22937											
FBN1	2200	broad.mit.edu	37	chr15	48726813	48726813	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacatgtcatcattggaccGggctcaaatccctcctcgca	7	15	4	0	rs111844882	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48726813	T	T	48726813	2	4	9	1	0	0	0	0	0	0	0	1	5759	1103	39	1		1	FBN1	15	48726813	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1710	48726813	53804579	14787	22938											
FBN1	2200	broad.mit.edu	37	chr15	48808391	48808391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcttacttggtggctccCgagatggatacagatattcc	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48808391	A	A	48808391	3	1	9	1	0	0	0	0	1	0	0	0	5759	652	23	1	7523	1	FBN1	15	48808391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81578	48808391	53723001	14788	22939											
FBN1	2200	broad.mit.edu	37	chr15	48808517	48808517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggatattctggtctcCcaggaattaccataggaaca	12	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48808517	A	A	48808517	3	1	9	1	0	0	0	0	1	0	0	0	5759	623	22	2	7649	2	FBN1	15	48808517	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126	48808517	53722875	14789	22940											
FBN1	2200	broad.mit.edu	37	chr15	48826182	48826182	+	Intron	SNP	G	T	T													cagggatgacaaagacagaaGgatttaggaataatttgcaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48826182	T	T	48826182	1	4	9	0	1	0	0	0	0	0	0	0	5759	1015	35	2		2	FBN1	15	48826182	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17665	48826182	53705210	14790	22941	153	2									
FBN1	2200	broad.mit.edu	37	chr15	48826189	48826189	+	Intron	SNP	G	T	T													gacaaagacagaaggatttaGgaataatttgcaaacaagct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48826189	T	T	48826189	1	4	9	0	1	0	0	0	0	0	0	0	5759	1015	35	2		2	FBN1	15	48826189	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7	48826189	53705203	14791	22942	153	2									
FBN1	2200	broad.mit.edu	37	chr15	48826318	48826318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaagtttgtgtccagcaGggcatttgcactcaaaagac	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48826318	T	T	48826318	3	4	9	1	0	0	0	0	1	0	0	0	5759	1000	35	2	8030	2	FBN1	15	48826318	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	129	48826318	53705074	14792	22943											
FBN1	2200	broad.mit.edu	37	chr15	48826377	48826377	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctccctgacagagcccGgggatggcctggcattcatc	11	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48826377	T	T	48826377	2	4	9	1	0	0	0	0	0	0	0	1	5759	1103	39	1		1	FBN1	15	48826377	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	59	48826377	53705015	14793	22944											
FBN1	2200	broad.mit.edu	37	chr15	48829943	48829943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttttgtgcagacaatccCgctgagttgtccctggcaca	10	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48829943	A	A	48829943	3	1	9	1	0	0	0	0	1	0	0	0	5759	652	23	1	8254	1	FBN1	15	48829943	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3566	48829943	53701449	14794	22945											
FBN1	2200	broad.mit.edu	37	chr15	48888492	48888492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accattacctctttcacactGgggtccagtaaatccgtaag	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48888492	T	T	48888492	3	4	9	1	0	0	0	0	1	0	0	0	5759	1357	47	2	8333	2	FBN1	15	48888492	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58549	48888492	53642900	14795	22946											
FBN1	2200	broad.mit.edu	37	chr15	48936742	48936742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggagagtcatcctgccCgttgttctggatcttgaaac	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48936742	A	A	48936742	1	1	9	0	1	0	0	0	0	0	0	0	5759	667	23	1		1	FBN1	15	48936742	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	48250	48936742	53594650	14796	22947											
FBN1	2200	broad.mit.edu	37	chr15	48936845	48936845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgcctcttctcttggccCgactggctctggtttccttc	8	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48936845	A	A	48936845	3	1	9	1	0	0	0	0	1	0	0	0	5759	652	23	1	8753	1	FBN1	15	48936845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103	48936845	53594547	14797	22948											
CEP152	22995	broad.mit.edu	37	chr15	49031277	49031277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtgtctctttggatccCacatgctttatgctctgatg	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49031277	A	A	49031277	2	1	9	1	0	0	0	0	0	0	0	1	3278	581	21	2		2	CEP152	15	49031277	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	94432	49031277	53500115	14798	22949											
CEP152	22995	broad.mit.edu	37	chr15	49033819	49033819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtgtagttttgctttGggacttactagaaataggtg	12	4	0	2	rs149478199	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49033819	T	T	49033819	3	4	9	1	0	0	0	0	1	0	0	0	3278	1357	47	2	1068	2	CEP152	15	49033819	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2542	49033819	53497573	14799	22950											
CEP152	22995	broad.mit.edu	37	chr15	49048409	49048409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtttgtaattctgtctcCttctgaagaagtagttcagt	8	7	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49048409	A	A	49048409	3	1	9	1	0	0	0	0	1	0	0	0	3278	680	24	2	1956	2	CEP152	15	49048409	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14590	49048409	53482983	14800	22951											
CEP152	22995	broad.mit.edu	37	chr15	49081079	49081079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtacttctttgtgaggccCataacaatgctctcatgctg	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49081079	A	A	49081079	3	1	9	1	0	0	0	0	1	0	0	0	3278	594	21	2	3944	2	CEP152	15	49081079	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32670	49081079	53450313	14801	22952											
SHC4	399694	broad.mit.edu	37	chr15	49118153	49118153	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgaaatatcagtgtgatGgtgcttcaatactgtcattt	8	6	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49118153	T	T	49118153	1	4	9	0	1	0	0	0	0	0	0	0	14386	1363	47	2		2	SHC4	15	49118153	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	37074	49118153	53413239	14802	22953											
SHC4	399694	broad.mit.edu	37	chr15	49255062	49255062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggcgagcccttgttccCgaccgagcctccggagctac	12	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49255062	A	A	49255062	3	1	9	1	0	0	0	0	1	0	0	0	14386	652	23	1	1789	1	SHC4	15	49255062	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136909	49255062	53276330	14803	22954											
SECISBP2L	9728	broad.mit.edu	37	chr15	49285002	49285002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggctgcttaccaattggGggtgtgtcaaatggaagttt	14	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49285002	T	T	49285002	2	4	9	1	0	0	0	0	0	0	0	1	14120	1219	43	2		2	SECISBP2L	15	49285002	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29940	49285002	53246390	14804	22955											
SECISBP2L	9728	broad.mit.edu	37	chr15	49288757	49288757	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttcctggcctcctcagtGagttctactaatttattaaa	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49288757	T	T	49288757	2	4	9	1	0	0	0	0	0	0	0	1	14120	1277	45	3		3	SECISBP2L	15	49288757	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3755	49288757	53242635	14805	22956											
SECISBP2L	9728	broad.mit.edu	37	chr15	49292142	49292142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaggaatttcttgttccCgtgccatggctataacatta	7	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49292142	A	A	49292142	3	1	9	1	0	0	0	0	1	0	0	0	14120	652	23	1	1026	1	SECISBP2L	15	49292142	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3385	49292142	53239250	14806	22957											
SECISBP2L	9728	broad.mit.edu	37	chr15	49292247	49292247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggagctaattgcacaccCgatagctaaagcataaaaca	7	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49292247	A	A	49292247	1	1	9	0	1	0	0	0	0	0	0	0	14120	667	23	1		1	SECISBP2L	15	49292247	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	49292247	53239145	14807	22958											
COPS2	9318	broad.mit.edu	37	chr15	49420858	49420858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactattattcaaaacttacGgtaccaaatattttgtgata	4	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49420858	T	T	49420858	1	4	9	0	1	0	0	0	0	0	0	0	3765	1131	39	1		1	COPS2	15	49420858	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	128611	49420858	53110534	14808	22959											
GALK2	2585	broad.mit.edu	37	chr15	49528121	49528121	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacaactatttcttatgtGgacttaaaggaattcaggta	9	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49528121	T	T	49528121	4	4	9	1	0	0	0	0	0	1	0	0	6266	1349	47	2	378	2	GALK2	15	49528121	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107263	49528121	53003271	14809	22960											
C15orf33	196951	broad.mit.edu	37	chr15	49657718	49657718	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacagatcagctttggtactCtgatgactactggcaatgtt	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49657718	A	A	49657718	1	1	9	0	1	0	0	0	0	0	0	0	1804	928	32	3		3	C15orf33	15	49657718	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	129597	49657718	52873674	14810	22961											
C15orf33	196951	broad.mit.edu	37	chr15	49880332	49880332	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attatacatatgaacctcctCtaaaaataaacaaaatttta	1	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49880332	A	A	49880332	1	1	9	0	1	0	0	0	0	0	0	0	1804	928	32	3		3	C15orf33	15	49880332	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	222614	49880332	52651060	14811	22962											
C15orf33	196951	broad.mit.edu	37	chr15	49907320	49907320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggaagcttccttacccCggggccagctctgctgctcc	11	16	1	0	rs144125881		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49907320	A	A	49907320	3	1	9	1	0	0	0	0	1	0	0	0	1804	652	23	1	1537	1	C15orf33	15	49907320	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26988	49907320	52624072	14812	22963											
ATP8B4	79895	broad.mit.edu	37	chr15	50271831	50271831	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctcacatataaggaaatGggtacaactgtattgagaat	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50271831	T	T	50271831	2	4	9	1	0	0	0	0	0	0	0	1	1201	1335	47	2		2	ATP8B4	15	50271831	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	364511	50271831	52259561	14813	22964											
GABPB1	2553	broad.mit.edu	37	chr15	50601978	50601978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctaaaagcttctttccCaaatctaccagggacatcta	5	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50601978	A	A	50601978	3	1	9	1	0	0	0	0	1	0	0	0	6218	593	21	2	1249	2	GABPB1	15	50601978	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	330147	50601978	51929414	14814	22965											
USP8	9101	broad.mit.edu	37	chr15	50769047	50769047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatttccttatttatagtGggaaagtaaaactgtcctgc	8	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50769047	T	T	50769047	3	4	9	1	0	0	0	0	1	0	0	0	17216	1362	47	2	881	2	USP8	15	50769047	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	167069	50769047	51762345	14815	22966											
USP8	9101	broad.mit.edu	37	chr15	50769692	50769692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctagtataaagaatgttcCacaggtatgttcttgatttt	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50769692	A	A	50769692	3	1	9	1	0	0	0	0	1	0	0	0	17216	594	21	2	1248	2	USP8	15	50769692	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	645	50769692	51761700	14816	22967											
USP8	9101	broad.mit.edu	37	chr15	50782647	50782647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcgctcctactcctcccCagatataacccaggctattc	6	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50782647	A	A	50782647	3	1	9	1	0	0	0	0	1	0	0	0	17216	594	21	2	2209	2	USP8	15	50782647	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12955	50782647	51748745	14817	22968											
USP8	9101	broad.mit.edu	37	chr15	50785614	50785614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtacttaccactcagctcCagaaaagtcaaattaggaaa	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50785614	A	A	50785614	1	1	9	0	1	0	0	0	0	0	0	0	17216	609	21	2		2	USP8	15	50785614	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2967	50785614	51745778	14818	22969											
USP50	373509	broad.mit.edu	37	chr15	50833371	50833371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgctcttcaaacagctGggtgatgatggatgtctcag	13	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50833371	T	T	50833371	3	4	9	1	0	0	0	0	1	0	0	0	17209	1357	47	2	485	2	USP50	15	50833371	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47757	50833371	51698021	14819	22970											
TRPM7	54822	broad.mit.edu	37	chr15	50886636	50886636	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttacttacttggtccatcGgaagtcttatctttctttct	6	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50886636	T	T	50886636	2	4	9	1	0	0	0	0	0	0	0	1	16716	1103	39	1		1	TRPM7	15	50886636	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53265	50886636	51644756	14820	22971											
TRPM7	54822	broad.mit.edu	37	chr15	50904882	50904882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgttgccataaaaaacGggccatgacctgcctcttca	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50904882	T	T	50904882	3	4	9	1	0	0	0	0	1	0	0	0	16716	1116	39	1	3778	1	TRPM7	15	50904882	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18246	50904882	51626510	14821	22972											
AP4E1	23431	broad.mit.edu	37	chr15	51242338	51242338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggaaaatgtgttctatcCacagagatttcttcaagtta	7	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51242338	A	A	51242338	3	1	9	1	0	0	0	0	1	0	0	0	754	594	21	2	1570	2	AP4E1	15	51242338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	337456	51242338	51289054	14822	22973											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51350428	51350428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttccggtagaggatccCgattttgatcgccaccttga	11	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51350428	A	A	51350428	3	1	9	1	0	0	0	0	1	0	0	0	16402	652	23	1	353	1	TNFAIP8L3	15	51350428	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	108090	51350428	51180964	14823	22974											
DMXL2	23312	broad.mit.edu	37	chr15	51755689	51755689	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatgcagaagaatcccGggacctattaaaaaaaatta	8	6	0	2	rs146266274		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51755689	T	T	51755689	2	4	9	1	0	0	0	0	0	0	0	1	4635	1115	39	1		1	DMXL2	15	51755689	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	405261	51755689	50775703	14824	22975											
DMXL2	23312	broad.mit.edu	37	chr15	51791169	51791169	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctatctcagtataatctcGagtaccatcttttcctacgg	5	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51791169	T	T	51791169	2	4	9	1	0	0	0	0	0	0	0	1	4635	1066	37	3		3	DMXL2	15	51791169	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35480	51791169	50740223	14825	22976											
DMXL2	23312	broad.mit.edu	37	chr15	51791580	51791580	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatcagcttcagtgtctcCaaatttgacagcatgcttcc	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51791580	A	A	51791580	4	1	9	1	0	0	0	0	0	1	0	0	4635	603	21	2	5376	2	DMXL2	15	51791580	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	411	51791580	50739812	14826	22977											
DMXL2	23312	broad.mit.edu	37	chr15	51828482	51828482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatgacaaaggtcctattGggtctacacgccacagaata	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51828482	T	T	51828482	3	4	9	1	0	0	0	0	1	0	0	0	4635	1348	47	2	7046	2	DMXL2	15	51828482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36902	51828482	50702910	14827	22978											
DMXL2	23312	broad.mit.edu	37	chr15	51830325	51830325	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaaaaggaggaagagcGggaaggaagaattcaaaact	13	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51830325	T	T	51830325	1	4	9	0	1	0	0	0	0	0	0	0	4635	1131	39	1		1	DMXL2	15	51830325	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1843	51830325	50701067	14828	22979											
DMXL2	23312	broad.mit.edu	37	chr15	51830377	51830377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaaagctgttaactttGgagtaagtaaaatctgaaca	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51830377	T	T	51830377	1	4	9	0	1	0	0	0	0	0	0	0	4635	1363	47	2		2	DMXL2	15	51830377	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	51830377	50701015	14829	22980											
DMXL2	23312	broad.mit.edu	37	chr15	51837753	51837753	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcacattatcttcaaaattCatttaccattttaaataata	0	8	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51837753	A	A	51837753	1	1	9	0	1	0	0	0	0	0	0	0	4635	841	29	3		3	DMXL2	15	51837753	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7376	51837753	50693639	14830	22981											
DMXL2	23312	broad.mit.edu	37	chr15	51868312	51868312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtttccatgcttagcacCaggaatgatctgtacacatt	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51868312	A	A	51868312	3	1	9	1	0	0	0	0	1	0	0	0	4635	594	21	2	9127	2	DMXL2	15	51868312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30559	51868312	50663080	14831	22982											
SCG3	29106	broad.mit.edu	37	chr15	51991479	51991479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttgatgtcatctctcaGggaataaaattaaatttctt	5	5	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51991479	T	T	51991479	1	4	9	0	1	0	0	0	0	0	0	0	14004	1015	35	2		2	SCG3	15	51991479	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	123167	51991479	50539913	14832	22983											
SCG3	29106	broad.mit.edu	37	chr15	51993307	51993307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaatctgattacagcacCatcagagaagagtcatgaag	9	9	4	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51993307	A	A	51993307	3	1	9	1	0	0	0	0	1	0	0	0	14004	594	21	2	1111	2	SCG3	15	51993307	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1828	51993307	50538085	14833	22984											
SCG3	29106	broad.mit.edu	37	chr15	52011500	52011500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgtgaaagatggggaatGgtaattgtgttattgtataa	13	1	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52011500	T	T	52011500	1	4	9	0	1	0	0	0	0	0	0	0	14004	1363	47	2		2	SCG3	15	52011500	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18193	52011500	50519892	14834	22985											
TMOD2	29767	broad.mit.edu	37	chr15	52075002	52075002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttcagcctggccgcaactCgcagcaatgaccctgtggcc	11	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52075002	A	A	52075002	3	1	9	1	0	0	0	0	1	0	0	0	16357	884	31	3	731	3	TMOD2	15	52075002	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63502	52075002	50456390	14835	22986											
TMOD3	29766	broad.mit.edu	37	chr15	52192420	52192420	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagtccaactttatcacGggagttgggattctggcact	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52192420	T	T	52192420	2	4	9	1	0	0	0	0	0	0	0	1	16358	1103	39	1		1	TMOD3	15	52192420	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	117418	52192420	50338972	14836	22987											
LEO1	123169	broad.mit.edu	37	chr15	52239481	52239481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctagaattgaataaatttGgtcttacctcatcactggta	6	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52239481	T	T	52239481	1	4	9	0	1	0	0	0	0	0	0	0	8798	1363	47	2		2	LEO1	15	52239481	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47061	52239481	50291911	14837	22988											
LEO1	123169	broad.mit.edu	37	chr15	52258142	52258142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaattagccttttcctcCtcagatagctgttgtctctc	6	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52258142	A	A	52258142	3	1	9	1	0	0	0	0	1	0	0	0	8798	680	24	2	1426	2	LEO1	15	52258142	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18661	52258142	50273250	14838	22989											
BCL2L10	10017	broad.mit.edu	37	chr15	52402026	52402026	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagttgggcaggtagaagcGggttaaaagttttaaaactc	12	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52402026	T	T	52402026	1	4	9	0	1	0	0	0	0	0	0	0	1373	1131	39	1		1	BCL2L10	15	52402026	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	143884	52402026	50129366	14839	22990											
MYO5C	55930	broad.mit.edu	37	chr15	52529828	52529828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagcttctccaccagccCatggttttctttgttctaga	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52529828	A	A	52529828	3	1	9	1	0	0	0	0	1	0	0	0	10174	594	21	2	2589	2	MYO5C	15	52529828	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127802	52529828	50001564	14840	22991											
MYO5A	4644	broad.mit.edu	37	chr15	52605852	52605852	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataatgggttcttatttcGggcaagaaatgtattgtcaa	9	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52605852	T	T	52605852	1	4	9	0	1	0	0	0	0	0	0	0	10172	1131	39	1		1	MYO5A	15	52605852	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	76024	52605852	49925540	14841	22992											
MYO5A	4644	broad.mit.edu	37	chr15	52622646	52622646	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggaatgttgactggtcGgatgggttcatcaatgatct	13	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52622646	T	T	52622646	2	4	9	1	0	0	0	0	0	0	0	1	10172	1124	39	1		1	MYO5A	15	52622646	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16794	52622646	49908746	14842	22993											
MYO5A	4644	broad.mit.edu	37	chr15	52659258	52659258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagcctgctgcacgatgcGgtgattgagggcttcttttt	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52659258	T	T	52659258	3	4	9	1	0	0	0	0	1	0	0	0	10172	1116	39	1	2513	1	MYO5A	15	52659258	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36612	52659258	49872134	14843	22994											
MYO5A	4644	broad.mit.edu	37	chr15	52662296	52662296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccaacagtgagtcacacGgaccaagtcatgatgacagc	9	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52662296	T	T	52662296	1	4	9	0	1	0	0	0	0	0	0	0	10172	1131	39	1		1	MYO5A	15	52662296	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3038	52662296	49869096	14844	22995											
MYO5A	4644	broad.mit.edu	37	chr15	52664267	52664267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaatattgaaaataatcCtggtggatttcttcaggcat	7	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52664267	A	A	52664267	1	1	9	0	1	0	0	0	0	0	0	0	10172	696	24	2		2	MYO5A	15	52664267	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1971	52664267	49867125	14845	22996											
ARPP19	10776	broad.mit.edu	37	chr15	52844215	52844215	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtcaccagtgacctcCgtcttatccggagctgcagt	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52844215	A	A	52844215	2	1	9	1	0	0	0	0	0	0	0	1	981	639	23	1		1	ARPP19	15	52844215	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	179948	52844215	49687177	14846	22997											
KIAA1370	56204	broad.mit.edu	37	chr15	52901598	52901598	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcatgttgaatgactgccGggggatatgtgatgctgttg	15	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52901598	T	T	52901598	2	4	9	1	0	0	0	0	0	0	0	1	8296	1115	39	1		1	KIAA1370	15	52901598	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57383	52901598	49629794	14847	22998											
UNC13C	440279	broad.mit.edu	37	chr15	54305996	54305996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagggtttgtccagtctcGgagggaaactagagacatcc	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54305996	T	T	54305996	3	4	9	1	0	0	0	0	1	0	0	0	17112	1116	39	1	898	1	UNC13C	15	54305996	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1404398	54305996	48225396	14848	22999											
UNC13C	440279	broad.mit.edu	37	chr15	54914585	54914585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggacatcactgccacccCaggaacgggagatcataaag	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54914585	A	A	54914585	3	1	9	1	0	0	0	0	1	0	0	0	17112	594	21	2	6281	2	UNC13C	15	54914585	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	608589	54914585	47616807	14849	23000											
UNC13C	440279	broad.mit.edu	37	chr15	54919114	54919114	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagaagatcgaattatcGgaatgacagtcattcagcta	9	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54919114	T	T	54919114	4	4	9	1	0	0	0	0	0	1	0	0	17112	1117	39	1	6570	1	UNC13C	15	54919114	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4529	54919114	47612278	14850	23001											
RSL24D1	51187	broad.mit.edu	37	chr15	55488967	55488967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgcgcccaggaaccgcGggagctaggctgaagcaaga	15	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55488967	T	T	55488967	1	4	9	0	1	0	0	0	0	0	0	0	13812	1131	39	1		1	RSL24D1	15	55488967	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	569853	55488967	47042425	14851	23002											
RAB27A	5873	broad.mit.edu	37	chr15	55497750	55497750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttcacttaactgatcCgtagaggcatgaccatttga	7	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55497750	A	A	55497750	2	1	9	1	0	0	0	0	0	0	0	1	13022	639	23	1		1	RAB27A	15	55497750	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8783	55497750	47033642	14852	23003											
CCPG1	9236	broad.mit.edu	37	chr15	55652471	55652471	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgccttacaaactccttGgtagaattcttcatggcatc	7	10	2	2	rs34699771		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55652471	T	T	55652471	2	4	9	1	0	0	0	0	0	0	0	1	2968	1335	47	2		2	CCPG1	15	55652471	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	154721	55652471	46878921	14853	23004											
CCPG1	9236	broad.mit.edu	37	chr15	55652650	55652650	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaatcagaacgctgctgttCgaaggttagcttccgttcca	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55652650	A	A	55652650	4	1	9	1	0	0	0	0	0	1	0	0	2968	893	31	3	956	3	CCPG1	15	55652650	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	179	55652650	46878742	14854	23005											
CCPG1	9236	broad.mit.edu	37	chr15	55652664	55652664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttcgaaggttagcttcCgttccagctcagtgagtctt	11	10	2	1	rs17857026		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55652664	A	A	55652664	3	1	9	1	0	0	0	0	1	0	0	0	2968	652	23	1	970	1	CCPG1	15	55652664	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	55652664	46878728	14855	23006											
PYGO1	26108	broad.mit.edu	37	chr15	55838837	55838837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgattagattctaacGgagaagtaaaatttgaatta	8	2	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55838837	T	T	55838837	3	4	9	1	0	0	0	0	1	0	0	0	12971	1116	39	1	619	1	PYGO1	15	55838837	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	186173	55838837	46692555	14856	23007											
PRTG	283659	broad.mit.edu	37	chr15	55965784	55965784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacagcaccacttggcccCgccgatatttggctgggatt	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55965784	A	A	55965784	3	1	9	1	0	0	0	0	1	0	0	0	12744	652	23	1	1859	1	PRTG	15	55965784	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126947	55965784	46565608	14857	23008											
NEDD4	4734	broad.mit.edu	37	chr15	56125206	56125206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctatggaaaatccttacCgtatagttcagcaaatccat	6	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56125206	A	A	56125206	3	1	9	1	0	0	0	0	1	0	0	0	10405	666	23	1	187	1	NEDD4	15	56125206	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	159422	56125206	46406186	14858	23009											
NEDD4	4734	broad.mit.edu	37	chr15	56132912	56132912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtttggatttatctgtaGggtataattgtccctgtaaa	10	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56132912	T	T	56132912	3	4	9	1	0	0	0	0	1	0	0	0	10405	991	35	2	890	2	NEDD4	15	56132912	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7706	56132912	46398480	14859	23010											
NEDD4	4734	broad.mit.edu	37	chr15	56142784	56142784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaataaagaaaggcctccCatttggtgcatgccggactt	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56142784	A	A	56142784	3	1	9	1	0	0	0	0	1	0	0	0	10405	594	21	2	1463	2	NEDD4	15	56142784	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9872	56142784	46388608	14860	23011											
NEDD4	4734	broad.mit.edu	37	chr15	56208911	56208911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacgttagacgttgaaatcCgtgttggtcttttgaagcac	10	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56208911	A	A	56208911	3	1	9	1	0	0	0	0	1	0	0	0	10405	652	23	1	3940	1	NEDD4	15	56208911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66127	56208911	46322481	14861	23012											
RFX7	64864	broad.mit.edu	37	chr15	56386503	56386503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagggactgcaaaaccCtcctgtttgttggtgttatt	13	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56386503	A	A	56386503	3	1	9	1	0	0	0	0	1	0	0	0	13376	680	24	2	963	2	RFX7	15	56386503	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	177592	56386503	46144889	14862	23013											
MNS1	55329	broad.mit.edu	37	chr15	56757156	56757156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtagtttcaagtccccCaactggctcaccatcttggc	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56757156	A	A	56757156	1	1	9	0	1	0	0	0	0	0	0	0	9771	609	21	2		2	MNS1	15	56757156	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	370653	56757156	45774236	14863	23014											
ZNF280D	54816	broad.mit.edu	37	chr15	56961074	56961074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttttataaatgttcgatGgtgttgagtcttatgatcca	10	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56961074	T	T	56961074	3	4	9	1	0	0	0	0	1	0	0	0	17943	1348	47	2	1483	2	ZNF280D	15	56961074	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	203918	56961074	45570318	14864	23015											
ZNF280D	54816	broad.mit.edu	37	chr15	56981516	56981516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttttgctagcatagcctGggaagaagtcactgaaggag	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56981516	T	T	56981516	3	4	9	1	0	0	0	0	1	0	0	0	17943	1357	47	2	2347	2	ZNF280D	15	56981516	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20442	56981516	45549876	14865	23016											
TCF12	6938	broad.mit.edu	37	chr15	57355979	57355979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaggtacaacatcttgGggaacaagtggtcaaccaag	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57355979	T	T	57355979	3	4	9	1	0	0	0	0	1	0	0	0	15809	1241	43	2	190	2	TCF12	15	57355979	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	374463	57355979	45175413	14866	23017											
TCF12	6938	broad.mit.edu	37	chr15	57565326	57565326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagaacgcttacgcgtgcGggatattaatgaagcattca	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57565326	T	T	57565326	3	4	9	1	0	0	0	0	1	0	0	0	15809	1116	39	1	1987	1	TCF12	15	57565326	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	209347	57565326	44966066	14867	23018											
TCF12	6938	broad.mit.edu	37	chr15	57574764	57574764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcttagtgaaactacCaaccctatgggtcatatgta	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57574764	A	A	57574764	2	1	9	1	0	0	0	0	0	0	0	1	15809	581	21	2		2	TCF12	15	57574764	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9438	57574764	44956628	14868	23019											
CGNL1	84952	broad.mit.edu	37	chr15	57731464	57731464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacctcctccggccttccCaggtgtgcccgcagcggcca	10	19	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57731464	A	A	57731464	3	1	9	1	0	0	0	0	1	0	0	0	3334	595	21	2	1269	2	CGNL1	15	57731464	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	156700	57731464	44799928	14869	23020											
ALDH1A2	8854	broad.mit.edu	37	chr15	58284974	58284974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgccccagccgttggccCatatcctggcaaaatattga	9	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58284974	A	A	58284974	3	1	9	1	0	0	0	0	1	0	0	0	491	594	21	2	857	2	ALDH1A2	15	58284974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	553510	58284974	44246418	14870	23021											
ALDH1A2	8854	broad.mit.edu	37	chr15	58306166	58306166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaagagagaaagccaggcGggctgcctgcactgctttgt	13	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58306166	T	T	58306166	3	4	9	1	0	0	0	0	1	0	0	0	491	1116	39	1	1347	1	ALDH1A2	15	58306166	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21192	58306166	44225226	14871	23022											
AQP9	366	broad.mit.edu	37	chr15	58465315	58465315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaatgtgtctctttggacGgatgaaatggttcaaattgc	11	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58465315	T	T	58465315	3	4	9	1	0	0	0	0	1	0	0	0	835	1116	39	1	297	1	AQP9	15	58465315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	159149	58465315	44066077	14872	23023											
AQP9	366	broad.mit.edu	37	chr15	58465385	58465385	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttgtgggggctgcaacCgtctttggcatttactatgg	13	9	1	0	rs148872883	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58465385	A	A	58465385	2	1	9	1	0	0	0	0	0	0	0	1	835	639	23	1		1	AQP9	15	58465385	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	58465385	44066007	14873	23024											
LIPC	3990	broad.mit.edu	37	chr15	58830669	58830669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacacgttacaggagtgcGgcttcaactcctccctgcct	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58830669	T	T	58830669	3	4	9	1	0	0	0	0	1	0	0	0	8893	1116	39	1	232	1	LIPC	15	58830669	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	365284	58830669	43700723	14874	23025											
LIPC	3990	broad.mit.edu	37	chr15	58834717	58834717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctcctgcccccatccCgctgctgtcttccaggaatc	6	19	3	0	rs6073	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58834717	A	A	58834717	1	1	9	0	1	0	0	0	0	0	0	0	8893	667	23	1		1	LIPC	15	58834717	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4048	58834717	43696675	14875	23026											
LIPC	3990	broad.mit.edu	37	chr15	58838040	58838040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccattcatacctttacccGggagcacatgggcctgagcg	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58838040	T	T	58838040	3	4	9	1	0	0	0	0	1	0	0	0	8893	1116	39	1	692	1	LIPC	15	58838040	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3323	58838040	43693352	14876	23027											
LIPC	3990	broad.mit.edu	37	chr15	58853171	58853171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaaatgcagaaaattcCcatcactctgtgagtaggag	10	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58853171	A	A	58853171	3	1	9	1	0	0	0	0	1	0	0	0	8893	623	22	2	1186	2	LIPC	15	58853171	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15131	58853171	43678221	14877	23028											
ADAM10	102	broad.mit.edu	37	chr15	58891913	58891913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccataagtaatactgccCaccaatgagcctagaaataa	5	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58891913	A	A	58891913	3	1	9	1	0	0	0	0	1	0	0	0	234	595	21	2	218	2	ADAM10	15	58891913	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38742	58891913	43639479	14878	23029											
ADAM10	102	broad.mit.edu	37	chr15	58904128	58904128	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacagtctgaatcatccCgacacttctcagactttgac	6	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58904128	A	A	58904128	3	1	9	1	0	0	0	0	1	0	0	0	234	652	23	1	692	1	ADAM10	15	58904128	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12215	58904128	43627264	14879	23030											
ADAM10	102	broad.mit.edu	37	chr15	58936117	58936117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatgaaactgatgttacGgattccggagaagtctgtgg	12	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58936117	T	T	58936117	3	4	9	1	0	0	0	0	1	0	0	0	234	1116	39	1	1490	1	ADAM10	15	58936117	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31989	58936117	43595275	14880	23031											
FAM63B	54629	broad.mit.edu	37	chr15	59063659	59063659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggccgggccagcgtcagGgacaggttcttcgcaggaag	18	11	2	0	rs61729219		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59063659	T	T	59063659	3	4	9	1	0	0	0	0	1	0	0	0	5648	1232	43	2	67	2	FAM63B	15	59063659	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127542	59063659	43467733	14881	23032											
FAM63B	54629	broad.mit.edu	37	chr15	59144094	59144094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaggaagaggacagacGggcttctcaatactatcagg	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59144094	T	T	59144094	3	4	9	1	0	0	0	0	1	0	0	0	5648	1116	39	1	1697	1	FAM63B	15	59144094	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80435	59144094	43387298	14882	23033											
SLTM	79811	broad.mit.edu	37	chr15	59175858	59175858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcatgcctgctcctgccCggccgtcacccattcgcctc	7	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59175858	A	A	59175858	3	1	9	1	0	0	0	0	1	0	0	0	14868	652	23	1	149	1	SLTM	15	59175858	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31764	59175858	43355534	14883	23034											
RNF111	54778	broad.mit.edu	37	chr15	59381896	59381896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggctatcctcacatcCgttacatttcatcaggattg	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59381896	A	A	59381896	3	1	9	1	0	0	0	0	1	0	0	0	13536	652	23	1	2619	1	RNF111	15	59381896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	206038	59381896	43149496	14884	23035											
RNF111	54778	broad.mit.edu	37	chr15	59381911	59381911	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccgttacatttcatcaGgattggatggaacatcattc	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59381911	T	T	59381911	4	4	9	1	0	0	0	0	0	1	0	0	13536	1001	35	2	2634	2	RNF111	15	59381911	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	59381911	43149481	14885	23036											
RNF111	54778	broad.mit.edu	37	chr15	59383309	59383309	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcaatcgtggagcatccCaggggacaattgaaagatgt	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59383309	A	A	59383309	3	1	9	1	0	0	0	0	1	0	0	0	13536	595	21	2	2737	2	RNF111	15	59383309	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1398	59383309	43148083	14886	23037											
CCNB2	9133	broad.mit.edu	37	chr15	59399709	59399709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtatagtgctgagtccCacaacgctggctgtcttgcg	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59399709	A	A	59399709	1	1	9	0	1	0	0	0	0	0	0	0	2943	609	21	2		2	CCNB2	15	59399709	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16400	59399709	43131683	14887	23038											
MYO1E	4643	broad.mit.edu	37	chr15	59510113	59510113	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccaagaaatcaaagacccGggcgtgcagggccttggcga	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59510113	T	T	59510113	2	4	9	1	0	0	0	0	0	0	0	1	10166	1115	39	1		1	MYO1E	15	59510113	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	110404	59510113	43021279	14888	23039											
MYO1E	4643	broad.mit.edu	37	chr15	59510170	59510170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggcctgctctacgttgaGggtcacgtggatggattcgg	15	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59510170	T	T	59510170	3	4	9	1	0	0	0	0	1	0	0	0	10166	1000	35	2	2375	2	MYO1E	15	59510170	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	57	59510170	43021222	14889	23040											
FAM81A	145773	broad.mit.edu	37	chr15	59806562	59806562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaacaggaacaagaacGgatagaaaaagagcttttac	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59806562	T	T	59806562	3	4	9	1	0	0	0	0	1	0	0	0	5681	1116	39	1	747	1	FAM81A	15	59806562	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	296392	59806562	42724830	14890	23041											
GCNT3	9245	broad.mit.edu	37	chr15	59911600	59911600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctggaatccaccagcGggctatctgcgtttatgggg	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59911600	T	T	59911600	3	4	9	1	0	0	0	0	1	0	0	0	6364	1116	39	1	1165	1	GCNT3	15	59911600	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	105038	59911600	42619792	14891	23042											
NARG2	79664	broad.mit.edu	37	chr15	60740219	60740219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcttgtctctatcctctGgacactgcagcgtacgagta	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60740219	T	T	60740219	3	4	9	1	0	0	0	0	1	0	0	0	10263	1357	47	2	727	2	NARG2	15	60740219	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	828619	60740219	41791173	14892	23043											
NARG2	79664	broad.mit.edu	37	chr15	60742022	60742022	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actctcaatttttcggcactCgttgacttcacaggacatct	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60742022	A	A	60742022	4	1	9	1	0	0	0	0	0	1	0	0	10263	893	31	3	1832	3	NARG2	15	60742022	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1803	60742022	41789370	14893	23044											
NARG2	79664	broad.mit.edu	37	chr15	60747258	60747258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactgttccttgtacgttGgtccatgattatttaataag	7	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60747258	T	T	60747258	3	4	9	1	0	0	0	0	1	0	0	0	10263	1348	47	2	2097	2	NARG2	15	60747258	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5236	60747258	41784134	14894	23045											
NARG2	79664	broad.mit.edu	37	chr15	60747458	60747458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggactttgggacaatcGggttagatatattttgtgag	14	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60747458	T	T	60747458	1	4	9	0	1	0	0	0	0	0	0	0	10263	1131	39	1		1	NARG2	15	60747458	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	200	60747458	41783934	14895	23046											
RORA	6095	broad.mit.edu	37	chr15	60794978	60794978	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaggatttgaagacgtcGgggctggcatacttcccatc	11	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60794978	T	T	60794978	2	4	9	1	0	0	0	0	0	0	0	1	13639	1103	39	1		1	RORA	15	60794978	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	47520	60794978	41736414	14896	23047											
RORA	6095	broad.mit.edu	37	chr15	60803671	60803671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgaagttccgtcagccCgttggccgagatgttgtagg	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60803671	A	A	60803671	3	1	9	1	0	0	0	0	1	0	0	0	13639	652	23	1	1025	1	RORA	15	60803671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8693	60803671	41727721	14897	23048											
VPS13C	54832	broad.mit.edu	37	chr15	62146670	62146671	+	Missense_Mutation	DNP	GG	TT	TT													ctgtgattaagatggcaattGgggtctgagaagtctcactg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	62146671	TT	TT	62146670	3	4	9	1	0	0	0	0	1	0	0	0	17318	1357	47	2	17	2	VPS13C	15	62146670	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	1342999	62146670	40384722	14898	23049											
VPS13C	54832	broad.mit.edu	37	chr15	62250853	62250853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatccaagtcttcagtaccCtcacagagattttctgttag	6	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62250853	A	A	62250853	3	1	9	1	0	0	0	0	1	0	0	0	17318	680	24	2	7366	2	VPS13C	15	62250853	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104183	62250853	40280539	14899	23050											
VPS13C	54832	broad.mit.edu	37	chr15	62265704	62265704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaagtagaccttttgtacCacctgaaataataggaattg	7	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62265704	A	A	62265704	3	1	9	1	0	0	0	0	1	0	0	0	17318	594	21	2	8963	2	VPS13C	15	62265704	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14851	62265704	40265688	14900	23051											
VPS13C	54832	broad.mit.edu	37	chr15	62283863	62283863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaataagttatttgacttGgaacttactttcaggaatca	6	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62283863	T	T	62283863	1	4	9	0	1	0	0	0	0	0	0	0	17318	1363	47	2		2	VPS13C	15	62283863	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18159	62283863	40247529	14901	23052											
VPS13C	54832	broad.mit.edu	37	chr15	62283953	62283953	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaccagcctccacgtttctCgcctgtgtcagcagactttt	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62283953	A	A	62283953	4	1	9	1	0	0	0	0	0	1	0	0	17318	893	31	3	10163	3	VPS13C	15	62283953	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	62283953	40247439	14902	23053											
TLN2	83660	broad.mit.edu	37	chr15	62948361	62948361	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgtatcttgtggcgagcagGagggcggcgctggcttctgc	17	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62948361	C	C	62948361	1	2	9	0	1	0	0	0	0	0	0	0	16071	1189	41	4		4	TLN2	15	62948361	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	664408	62948361	39583031	14903	23054											
TLN2	83660	broad.mit.edu	37	chr15	63040603	63040603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgtacccaacaagctcCgggccagaaagagtgcgata	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63040603	A	A	63040603	3	1	9	1	0	0	0	0	1	0	0	0	16071	652	23	1	4197	1	TLN2	15	63040603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92242	63040603	39490789	14904	23055											
TLN2	83660	broad.mit.edu	37	chr15	63044430	63044430	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccttgaatattaaagttGgagtgtagcctcctttaccc	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63044430	T	T	63044430	1	4	9	0	1	0	0	0	0	0	0	0	16071	1363	47	2		2	TLN2	15	63044430	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3827	63044430	39486962	14905	23056											
APH1B	83464	broad.mit.edu	37	chr15	63579615	63579615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaacagtgtttttcttcCtgtttagtttctggcttggg	10	6	2	0	rs34665128		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63579615	A	A	63579615	1	1	9	0	1	0	0	0	0	0	0	0	774	696	24	2		2	APH1B	15	63579615	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	535185	63579615	38951777	14906	23057											
APH1B	83464	broad.mit.edu	37	chr15	63579690	63579690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataccctatctgactccttGgggccaggcacagtgggcat	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63579690	T	T	63579690	3	4	9	1	0	0	0	0	1	0	0	0	774	1339	47	2	437	2	APH1B	15	63579690	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	75	63579690	38951702	14907	23058											
USP3	9960	broad.mit.edu	37	chr15	63881159	63881159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcctgagaacagtggccCggagagctgcctgtatgacc	14	11	0	3	rs142151239		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63881159	A	A	63881159	3	1	9	1	0	0	0	0	1	0	0	0	17187	652	23	1	1400	1	USP3	15	63881159	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	301469	63881159	38650233	14908	23059											
HERC1	8925	broad.mit.edu	37	chr15	63904657	63904657	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacttccacagagatctcGggcatcccacacaccatctg	7	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63904657	T	T	63904657	2	4	9	1	0	0	0	0	0	0	0	1	7124	1103	39	1		1	HERC1	15	63904657	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23498	63904657	38626735	14909	23060											
HERC1	8925	broad.mit.edu	37	chr15	63928199	63928199	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaggcctcgatctgcctGggccgccgctgcctgtcgct	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63928199	T	T	63928199	2	4	9	1	0	0	0	0	0	0	0	1	7124	1335	47	2		2	HERC1	15	63928199	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23542	63928199	38603193	14910	23061											
HERC1	8925	broad.mit.edu	37	chr15	63978587	63978587	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcacccagaagttactcCtgtagatgccaatccatatc	6	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63978587	A	A	63978587	4	1	9	1	0	0	0	0	0	1	0	0	7124	690	24	2	8569	2	HERC1	15	63978587	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50388	63978587	38552805	14911	23062											
HERC1	8925	broad.mit.edu	37	chr15	64025227	64025227	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgatctgacagatttcCgtagccagtacacacagaag	10	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64025227	A	A	64025227	4	1	9	1	0	0	0	0	0	1	0	0	7124	661	23	1	12081	1	HERC1	15	64025227	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46640	64025227	38506165	14912	23063											
HERC1	8925	broad.mit.edu	37	chr15	64048666	64048666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtccctgaataagcttGggatatttctgtgttgaact	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64048666	T	T	64048666	2	4	9	1	0	0	0	0	0	0	0	1	7124	1335	47	2		2	HERC1	15	64048666	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23439	64048666	38482726	14913	23064											
DAPK2	23604	broad.mit.edu	37	chr15	64263668	64263668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtgaaggtagttcaccCcatccaggatctgcttaatg	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64263668	A	A	64263668	3	1	9	1	0	0	0	0	1	0	0	0	4269	623	22	2	741	2	DAPK2	15	64263668	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	215002	64263668	38267724	14914	23065											
SNX22	79856	broad.mit.edu	37	chr15	64448863	64448863	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatggagctcctgccctgGggtctgtgttgaatccccgg	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64448863	T	T	64448863	1	4	9	0	1	0	0	0	0	0	0	0	15008	1247	43	2		2	SNX22	15	64448863	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	185195	64448863	38082529	14915	23066											
PPIB	5479	broad.mit.edu	37	chr15	64454313	64454313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagagaccaaagatcaccCggcctacatcttcatctcca	6	15	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64454313	A	A	64454313	3	1	9	1	0	0	0	0	1	0	0	0	12420	652	23	1	490	1	PPIB	15	64454313	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5450	64454313	38077079	14916	23067											
TRIP4	9325	broad.mit.edu	37	chr15	64706417	64706417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcccctccccaggttagtGgacctttgctctaactgtta	8	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64706417	T	T	64706417	1	4	9	0	1	0	0	0	0	0	0	0	16683	1363	47	2		2	TRIP4	15	64706417	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	252104	64706417	37824975	14917	23068											
TRIP4	9325	broad.mit.edu	37	chr15	64717702	64717702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttccaagatcacaaagaaGgaaatttattcaatattttt	5	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64717702	T	T	64717702	1	4	9	0	1	0	0	0	0	0	0	0	16683	1015	35	2		2	TRIP4	15	64717702	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11285	64717702	37813690	14918	23069											
TRIP4	9325	broad.mit.edu	37	chr15	64717779	64717779	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccgtcaggttgtcttctGggctgtgtggacctaattga	12	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64717779	T	T	64717779	2	4	9	1	0	0	0	0	0	0	0	1	16683	1335	47	2		2	TRIP4	15	64717779	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	77	64717779	37813613	14919	23070											
ZNF609	23060	broad.mit.edu	37	chr15	64914945	64914945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcaggaatagatataGgactagattaaatacagaaa	9	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64914945	T	T	64914945	1	4	9	0	1	0	0	0	0	0	0	0	18162	1015	35	2		2	ZNF609	15	64914945	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	197166	64914945	37616447	14920	23071											
ZNF609	23060	broad.mit.edu	37	chr15	64968488	64968488	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaggaagtggaaatacCgtatggtaatcgtctatctt	12	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64968488	A	A	64968488	1	1	9	0	1	0	0	0	0	0	0	0	18162	667	23	1		1	ZNF609	15	64968488	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53543	64968488	37562904	14921	23072											
ZNF609	23060	broad.mit.edu	37	chr15	64973473	64973473	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattaatggaaggtttctgtGagtgctacactaacatgttc	10	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64973473	T	T	64973473	1	4	9	0	1	0	0	0	0	0	0	0	18162	1305	45	3		3	ZNF609	15	64973473	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4985	64973473	37557919	14922	23073											
RBPMS2	348093	broad.mit.edu	37	chr15	65042526	65042526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgggaggaagaaaaccCtaggagagaaattacctgtc	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65042526	A	A	65042526	1	1	9	0	1	0	0	0	0	0	0	0	13272	696	24	2		2	RBPMS2	15	65042526	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	69053	65042526	37488866	14923	23074											
PIF1	80119	broad.mit.edu	37	chr15	65108823	65108823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatagaagtgcagcacacGggggtcacagcgaaccgcca	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65108823	T	T	65108823	3	4	9	1	0	0	0	0	1	0	0	0	11978	1116	39	1	117	1	PIF1	15	65108823	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	66297	65108823	37422569	14924	23075											
SPG21	51324	broad.mit.edu	37	chr15	65262453	65262453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgtcatgatccttaccCtgtctaccatgaaatcaatg	5	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65262453	A	A	65262453	3	1	9	1	0	0	0	0	1	0	0	0	15161	695	24	2	382	2	SPG21	15	65262453	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	153630	65262453	37268939	14925	23076											
SPG21	51324	broad.mit.edu	37	chr15	65262498	65262498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccatcatagggtccaccGggccagatgaaaaatttcca	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65262498	T	T	65262498	3	4	9	1	0	0	0	0	1	0	0	0	15161	1116	39	1	427	1	SPG21	15	65262498	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	65262498	37268894	14926	23077											
MTFMT	123263	broad.mit.edu	37	chr15	65297261	65297261	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaataagagcctgtccCgttaattttggatctgaaga	10	8	1	3	rs34636936	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65297261	A	A	65297261	2	1	9	1	0	0	0	0	0	0	0	1	10018	639	23	1		1	MTFMT	15	65297261	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	34763	65297261	37234131	14927	23078											
MTFMT	123263	broad.mit.edu	37	chr15	65308791	65308791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactatatttccaatggcacGgtaaagtctgaatatttgtt	7	6	1	1	rs35302908	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65308791	T	T	65308791	3	4	9	1	0	0	0	0	1	0	0	0	10018	1116	39	1	389	1	MTFMT	15	65308791	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11530	65308791	37222601	14928	23079											
PDCD7	10081	broad.mit.edu	37	chr15	65421344	65421344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaggggaagggaacaaGgaaagaaatgcaaagccaca	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65421344	T	T	65421344	1	4	9	0	1	0	0	0	0	0	0	0	11719	1015	35	2		2	PDCD7	15	65421344	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	112553	65421344	37110048	14929	23080											
CLPX	10845	broad.mit.edu	37	chr15	65454965	65454965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatctgtactcatcctccCgtcttcttatttctaactct	2	13	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65454965	A	A	65454965	3	1	9	1	0	0	0	0	1	0	0	0	3588	652	23	1	1245	1	CLPX	15	65454965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33621	65454965	37076427	14930	23081											
PARP16	54956	broad.mit.edu	37	chr15	65553127	65553127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacatacttgacatctagcGgaggtctaaggctgggggag	14	7	2	1	rs141486612	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65553127	T	T	65553127	1	4	9	0	1	0	0	0	0	0	0	0	11554	1131	39	1		1	PARP16	15	65553127	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	98162	65553127	36978265	14931	23082											
PARP16	54956	broad.mit.edu	37	chr15	65563258	65563258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaaatctgtgatgctacGgaccaaagtctcacctctgc	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65563258	T	T	65563258	1	4	9	0	1	0	0	0	0	0	0	0	11554	1131	39	1		1	PARP16	15	65563258	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10131	65563258	36968134	14932	23083											
IGDCC3	9543	broad.mit.edu	37	chr15	65622255	65622255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggtctgaagcactccCaaacacccagcctctgggga	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65622255	A	A	65622255	1	1	9	0	1	0	0	0	0	0	0	0	7638	609	21	2		2	IGDCC3	15	65622255	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58997	65622255	36909137	14933	23084											
DPP8	54878	broad.mit.edu	37	chr15	65793045	65793045	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatcgtaagaagcaattcCgactgttccaatgcgttttc	7	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65793045	A	A	65793045	4	1	9	1	0	0	0	0	0	1	0	0	4772	661	23	1	2271	1	DPP8	15	65793045	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	170790	65793045	36738347	14934	23085											
DPP8	54878	broad.mit.edu	37	chr15	65804934	65804934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcacatgaagctgttcacGggtctatcttctattatcag	9	9	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65804934	T	T	65804934	1	4	9	0	1	0	0	0	0	0	0	0	4772	1131	39	1		1	DPP8	15	65804934	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11889	65804934	36726458	14935	23086											
SLC24A1	9187	broad.mit.edu	37	chr15	65917987	65917987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttcccacagcaacgtGggcattggtaccattgtggg	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65917987	T	T	65917987	2	4	9	1	0	0	0	0	0	0	0	1	14579	1335	47	2		2	SLC24A1	15	65917987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	113053	65917987	36613405	14936	23087											
SLC24A1	9187	broad.mit.edu	37	chr15	65946327	65946327	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaatgaacaagatcctGggcttcacaatgttcctcct	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65946327	T	T	65946327	2	4	9	1	0	0	0	0	0	0	0	1	14579	1335	47	2		2	SLC24A1	15	65946327	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28340	65946327	36585065	14937	23088											
DENND4A	10260	broad.mit.edu	37	chr15	65962309	65962309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaaaagagatattataGggaacatgatccttaaacat	8	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65962309	T	T	65962309	1	4	9	0	1	0	0	0	0	0	0	0	4473	1015	35	2		2	DENND4A	15	65962309	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15982	65962309	36569083	14938	23089											
DENND4A	10260	broad.mit.edu	37	chr15	65988716	65988716	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacttacccatgctttctcCtgatattttaccagcactgt	4	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65988716	A	A	65988716	4	1	9	1	0	0	0	0	0	1	0	0	4473	690	24	2	2701	2	DENND4A	15	65988716	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26407	65988716	36542676	14939	23090											
DENND4A	10260	broad.mit.edu	37	chr15	65995144	65995144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgataaagcatattacGggaggataaatatccaattt	9	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65995144	T	T	65995144	1	4	9	0	1	0	0	0	0	0	0	0	4473	1131	39	1		1	DENND4A	15	65995144	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6428	65995144	36536248	14940	23091											
DENND4A	10260	broad.mit.edu	37	chr15	66064031	66064031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaaggaaatccaccccCaaaaaatatattaaacaagt	4	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66064031	A	A	66064031	1	1	9	0	1	0	0	0	0	0	0	0	4473	609	21	2		2	DENND4A	15	66064031	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	68887	66064031	36467361	14941	23092											
MEGF11	84465	broad.mit.edu	37	chr15	66208009	66208009	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttccatgtttagacagctAtggcaataagcctgttttgc	8	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66208009	G	G	66208009	1	3	9	0	1	0	0	0	0	0	0	0	9554	464	16	5		5	MEGF11	15	66208009	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	143978	66208009	36323383	14942	23093											
DIS3L	115752	broad.mit.edu	37	chr15	66610790	66610790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttgttttgccaaaggtcGagtggtgggcatacttcaga	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66610790	T	T	66610790	3	4	9	1	0	0	0	0	1	0	0	0	4576	1058	37	3	1028	3	DIS3L	15	66610790	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	402781	66610790	35920602	14943	23094											
DIS3L	115752	broad.mit.edu	37	chr15	66612996	66612996	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgttttaggaagaatcGgagatctggaaggggaaatt	15	3	1	2	rs147438451		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66612996	T	T	66612996	4	4	9	1	0	0	0	0	0	1	0	0	4576	1117	39	1	1286	1	DIS3L	15	66612996	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2206	66612996	35918396	14944	23095											
DIS3L	115752	broad.mit.edu	37	chr15	66615830	66615830	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtgtgtgtcattcacaGggccaccacttattatctag	9	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66615830	T	T	66615830	5	4	9	1	0	0	0	0	0	0	1	0	4576	1014	35	2	1616	2	DIS3L	15	66615830	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	2834	66615830	35915562	14945	23096											
DIS3L	115752	broad.mit.edu	37	chr15	66624309	66624309	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcgttgcatatctgacGgagttatttattcaattaga	10	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66624309	T	T	66624309	4	4	9	1	0	0	0	0	0	1	0	0	4576	1117	39	1	2690	1	DIS3L	15	66624309	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8479	66624309	35907083	14946	23097											
MAP2K1	5604	broad.mit.edu	37	chr15	66779571	66779571	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataaaatttgtagcatacGgaatggacagccgacctccc	8	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66779571	T	T	66779571	4	4	9	1	0	0	0	0	0	1	0	0	9328	1117	39	1	931	1	MAP2K1	15	66779571	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	155262	66779571	35751821	14947	23098											
SNAPC5	10302	broad.mit.edu	37	chr15	66782823	66782823	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttaacaccacgtcctctCgtttccttacatgcaggttc	5	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66782823	A	A	66782823	1	1	9	0	1	0	0	0	0	0	0	0	14952	899	31	3		3	SNAPC5	15	66782823	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	3252	66782823	35748569	14948	23099											
RPL4	6124	broad.mit.edu	37	chr15	66792443	66792443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcatggtctttgcatatGggtttagcttcaacatgatt	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66792443	T	T	66792443	3	4	9	1	0	0	0	0	1	0	0	0	13706	1348	47	2	302	2	RPL4	15	66792443	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9620	66792443	35738949	14949	23100											
LCTL	197021	broad.mit.edu	37	chr15	66845511	66845511	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctaatcccaagaaatcGgatgtgcctttaatgtagct	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66845511	T	T	66845511	2	4	9	1	0	0	0	0	0	0	0	1	8766	1103	39	1		1	LCTL	15	66845511	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53068	66845511	35685881	14950	23101											
IQCH	64799	broad.mit.edu	37	chr15	67677274	67677274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccttgtttgccttttagGgtattcccagcctgtgagag	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67677274	T	T	67677274	3	4	9	1	0	0	0	0	1	0	0	0	7881	1246	43	2	1543	2	IQCH	15	67677274	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	831763	67677274	34854118	14951	23102											
MAP2K5	5607	broad.mit.edu	37	chr15	67879204	67879204	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaatactcgggccggaccCtctcaacacagcagcccagc	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67879204	A	A	67879204	2	1	9	1	0	0	0	0	0	0	0	1	9332	668	24	2		2	MAP2K5	15	67879204	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	201930	67879204	34652188	14952	23103											
MAP2K5	5607	broad.mit.edu	37	chr15	67921335	67921335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcttcaaatttcagaccCgtgaagggaggaaactttgg	11	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67921335	A	A	67921335	1	1	9	0	1	0	0	0	0	0	0	0	9332	667	23	1		1	MAP2K5	15	67921335	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42131	67921335	34610057	14953	23104											
CLN6	54982	broad.mit.edu	37	chr15	68504051	68504051	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcttgatgatggggttctCacggacagacaggtggtgct	14	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68504051	A	A	68504051	4	1	9	1	0	0	0	0	0	1	0	0	3577	835	29	3	503	3	CLN6	15	68504051	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	582716	68504051	34027341	14954	23105											
CLN6	54982	broad.mit.edu	37	chr15	68547166	68547166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaagctggcaaggaggGgaataaccctgcagaaaatg	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68547166	T	T	68547166	1	4	9	0	1	0	0	0	0	0	0	0	3577	1247	43	2		2	CLN6	15	68547166	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43115	68547166	33984226	14955	23106											
ITGA11	22801	broad.mit.edu	37	chr15	68643102	68643102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggattgatccccctgcGgttgtagtagcccaggacct	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68643102	T	T	68643102	3	4	9	1	0	0	0	0	1	0	0	0	7944	1116	39	1	2741	1	ITGA11	15	68643102	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95936	68643102	33888290	14956	23107											
CORO2B	10391	broad.mit.edu	37	chr15	69007445	69007445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttccttggtttttttaaCtgcccatgaggcacagggga	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69007445	A	A	69007445	1	1	9	0	1	0	0	0	0	0	0	0	3789	580	20	3		3	CORO2B	15	69007445	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	364343	69007445	33523947	14957	23108											
CORO2B	10391	broad.mit.edu	37	chr15	69011756	69011756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgccttctttagatccCgtgctgatgtctttgaaaga	8	11	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69011756	A	A	69011756	2	1	9	1	0	0	0	0	0	0	0	1	3789	639	23	1		1	CORO2B	15	69011756	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4311	69011756	33519636	14958	23109											
ANP32A	8125	broad.mit.edu	37	chr15	69076843	69076843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgagatatgtgagttgcGggaggagcttgaacacattt	14	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69076843	T	T	69076843	3	4	9	1	0	0	0	0	1	0	0	0	705	1116	39	1	346	1	ANP32A	15	69076843	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	65087	69076843	33454549	14959	23110											
SPESP1	246777	broad.mit.edu	37	chr15	69238506	69238506	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactgcgatagaaaaaccCgaagagtttggaaagcaccc	10	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69238506	A	A	69238506	2	1	9	1	0	0	0	0	0	0	0	1	15158	639	23	1		1	SPESP1	15	69238506	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	161663	69238506	33292886	14960	23111											
NOX5	79400	broad.mit.edu	37	chr15	69325369	69325369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgcctctgagcggaaccCgcctctctcgcagcgctgcc	11	19	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69325369	A	A	69325369	1	1	9	0	1	0	0	0	0	0	0	0	10654	667	23	1		1	NOX5	15	69325369	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	86863	69325369	33206023	14961	23112											
NOX5	79400	broad.mit.edu	37	chr15	69331270	69331270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacttgtatctgaacatccCcaccattgctcgctatgagt	6	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69331270	A	A	69331270	3	1	9	1	0	0	0	0	1	0	0	0	10654	623	22	2	1512	2	NOX5	15	69331270	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5901	69331270	33200122	14962	23113											
NOX5	79400	broad.mit.edu	37	chr15	69331298	69331298	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgctatgagtggcacccCttcaccatcagcagtgctcc	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69331298	A	A	69331298	2	1	9	1	0	0	0	0	0	0	0	1	10654	668	24	2		2	NOX5	15	69331298	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	69331298	33200094	14963	23114											
GLCE	26035	broad.mit.edu	37	chr15	69548540	69548540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctttcttccattcacttGggttgagaaatattttgatg	8	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69548540	T	T	69548540	3	4	9	1	0	0	0	0	1	0	0	0	6496	1357	47	2	397	2	GLCE	15	69548540	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	217242	69548540	32982852	14964	23115											
GLCE	26035	broad.mit.edu	37	chr15	69548722	69548722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagtcaagtgcataagtGgggttgaaggttggtatctg	15	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69548722	T	T	69548722	3	4	9	1	0	0	0	0	1	0	0	0	6496	1348	47	2	579	2	GLCE	15	69548722	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	182	69548722	32982670	14965	23116											
KIF23	9493	broad.mit.edu	37	chr15	69738347	69738347	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccttttcttttggctttaGggtgatatttataaaacaag	8	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69738347	T	T	69738347	5	4	9	1	0	0	0	0	0	0	1	0	8361	1014	35	2	2709	2	KIF23	15	69738347	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	189625	69738347	32793045	14966	23117											
UACA	55075	broad.mit.edu	37	chr15	70952515	70952515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcactaagaaggtgtgtcCgataaattgcaattacttct	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70952515	A	A	70952515	3	1	9	1	0	0	0	0	1	0	0	0	16950	652	23	1	104	1	UACA	15	70952515	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1214168	70952515	31578877	14967	23118											
UACA	55075	broad.mit.edu	37	chr15	70959555	70959555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagttcttttgattctcCaacaattgatgcagtttggt	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70959555	A	A	70959555	3	1	9	1	0	0	0	0	1	0	0	0	16950	593	21	2	798	2	UACA	15	70959555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7040	70959555	31571837	14968	23119											
UACA	55075	broad.mit.edu	37	chr15	70959685	70959685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctcaacctgttccaatGgaacatgttgtttttgcaaa	8	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70959685	T	T	70959685	3	4	9	1	0	0	0	0	1	0	0	0	16950	1348	47	2	928	2	UACA	15	70959685	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	130	70959685	31571707	14969	23120											
UACA	55075	broad.mit.edu	37	chr15	70961406	70961406	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgatccttcagttcctcGgttagtctgtgattccctga	8	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70961406	T	T	70961406	2	4	9	1	0	0	0	0	0	0	0	1	16950	1103	39	1		1	UACA	15	70961406	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1721	70961406	31569986	14970	23121											
UACA	55075	broad.mit.edu	37	chr15	70961468	70961468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttaagggcaagaaaatGggtctgcatttgtttaactt	9	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70961468	T	T	70961468	3	4	9	1	0	0	0	0	1	0	0	0	16950	1348	47	2	2711	2	UACA	15	70961468	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62	70961468	31569924	14971	23122											
UACA	55075	broad.mit.edu	37	chr15	70976854	70976854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgcagaaatattctgccCtattgttgaacactgtctta	6	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70976854	A	A	70976854	1	1	9	0	1	0	0	0	0	0	0	0	16950	696	24	2		2	UACA	15	70976854	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15386	70976854	31554538	14972	23123											
LARP6	55323	broad.mit.edu	37	chr15	71124877	71124877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcagaagactcatcaccCatgtactgaagctcctcgac	8	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71124877	A	A	71124877	3	1	9	1	0	0	0	0	1	0	0	0	8704	594	21	2	489	2	LARP6	15	71124877	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	148023	71124877	31406515	14973	23124											
LARP6	55323	broad.mit.edu	37	chr15	71125439	71125439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtggttctccagtccCgtgtaagatgtttcacctgc	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71125439	A	A	71125439	3	1	9	1	0	0	0	0	1	0	0	0	8704	652	23	1	1051	1	LARP6	15	71125439	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	562	71125439	31405953	14974	23125											
THAP10	56906	broad.mit.edu	37	chr15	71174859	71174859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgttcactcttgatatcCcagtctgtatctgtttctga	6	11	6	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71174859	A	A	71174859	3	1	9	1	0	0	0	0	1	0	0	0	15965	624	22	2	69	2	THAP10	15	71174859	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49420	71174859	31356533	14975	23126											
LRRC49	54839	broad.mit.edu	37	chr15	71185242	71185242	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctcctatcatgattccCgggaaatatcgctctgtttc	7	12	3	1	rs140304929		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71185242	A	A	71185242	2	1	9	1	0	0	0	0	0	0	0	1	9093	639	23	1		1	LRRC49	15	71185242	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10383	71185242	31346150	14976	23127											
LRRC49	54839	broad.mit.edu	37	chr15	71197045	71197045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagattgaagaaattagtGggctttcgactctgagatgt	11	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71197045	T	T	71197045	3	4	9	1	0	0	0	0	1	0	0	0	9093	1348	47	2	469	2	LRRC49	15	71197045	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11803	71197045	31334347	14977	23128											
LRRC49	54839	broad.mit.edu	37	chr15	71211547	71211547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtggtgagtattaaaatGgagttgatatgtactttgtg	12	2	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71211547	T	T	71211547	1	4	9	0	1	0	0	0	0	0	0	0	9093	1363	47	2		2	LRRC49	15	71211547	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	14502	71211547	31319845	14978	23129											
LRRC49	54839	broad.mit.edu	37	chr15	71256166	71256166	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgactcttcttccctctcGgacatcacctttgatggcaa	7	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71256166	T	T	71256166	2	4	9	1	0	0	0	0	0	0	0	1	9093	1103	39	1		1	LRRC49	15	71256166	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44619	71256166	31275226	14979	23130											
THSD4	79875	broad.mit.edu	37	chr15	71535010	71535010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggacccgtggtaccattGgccctggcaagtatggctat	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71535010	T	T	71535010	3	4	9	1	0	0	0	0	1	0	0	0	16001	1348	47	2	501	2	THSD4	15	71535010	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	278844	71535010	30996382	14980	23131											
THSD4	79875	broad.mit.edu	37	chr15	71633964	71633964	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatggcctgagcagtttcacGagtgttcttaaagtgaacac	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71633964	T	T	71633964	1	4	9	0	1	0	0	0	0	0	0	0	16001	1073	37	3		3	THSD4	15	71633964	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	98954	71633964	30897428	14981	23132											
MYO9A	4649	broad.mit.edu	37	chr15	72118899	72118899	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaccactctgtagccacGgagggacacacatctgccgg	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72118899	T	T	72118899	1	4	9	0	1	0	0	0	0	0	0	0	10178	1131	39	1		1	MYO9A	15	72118899	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	484935	72118899	30412493	14982	23133											
MYO9A	4649	broad.mit.edu	37	chr15	72146847	72146847	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactactaaaggaacagttcGgtcttcactggtcaaacggg	10	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72146847	T	T	72146847	2	4	9	1	0	0	0	0	0	0	0	1	10178	1124	39	1		1	MYO9A	15	72146847	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27948	72146847	30384545	14983	23134											
MYO9A	4649	broad.mit.edu	37	chr15	72146865	72146865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtcttcactggtcaaacGggacagttcaaccccaaatt	8	12	4	0	rs148236635		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72146865	T	T	72146865	3	4	9	1	0	0	0	0	1	0	0	0	10178	1116	39	1	1479	1	MYO9A	15	72146865	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18	72146865	30384527	14984	23135											
MYO9A	4649	broad.mit.edu	37	chr15	72190210	72190210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgactgataggaagatGgtgccaccaaacactctcca	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72190210	T	T	72190210	3	4	9	1	0	0	0	0	1	0	0	0	10178	1348	47	2	3084	2	MYO9A	15	72190210	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43345	72190210	30341182	14985	23136											
MYO9A	4649	broad.mit.edu	37	chr15	72190735	72190735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactgagggcattgtccCgtgaatcaaattttggactg	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72190735	A	A	72190735	3	1	9	1	0	0	0	0	1	0	0	0	10178	652	23	1	3609	1	MYO9A	15	72190735	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	525	72190735	30340657	14986	23137											
MYO9A	4649	broad.mit.edu	37	chr15	72190888	72190888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcactatcaggtgtacccCgtggagactgaaggccttca	10	12	3	2	rs150886312		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72190888	A	A	72190888	3	1	9	1	0	0	0	0	1	0	0	0	10178	652	23	1	3762	1	MYO9A	15	72190888	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	153	72190888	30340504	14987	23138											
MYO9A	4649	broad.mit.edu	37	chr15	72195371	72195371	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggatggaataatatttcGgggaagaagtacatggaagt	13	2	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72195371	T	T	72195371	2	4	9	1	0	0	0	0	0	0	0	1	10178	1124	39	1		1	MYO9A	15	72195371	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4483	72195371	30336021	14988	23139											
MYO9A	4649	broad.mit.edu	37	chr15	72300228	72300228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatatcaatggagtcatccCggtatgtcttctttttgtaa	8	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72300228	A	A	72300228	3	1	9	1	0	0	0	0	1	0	0	0	10178	652	23	1	6467	1	MYO9A	15	72300228	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104857	72300228	30231164	14989	23140											
MYO9A	4649	broad.mit.edu	37	chr15	72302705	72302705	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcactgtcttcgtgtcttGggaagaaatcctaccatttc	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72302705	T	T	72302705	2	4	9	1	0	0	0	0	0	0	0	1	10178	1335	47	2		2	MYO9A	15	72302705	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2477	72302705	30228687	14990	23141											
SENP8	123228	broad.mit.edu	37	chr15	72431973	72431973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcagtacaagatggacccCgtagtcttgagttacatgga	11	9	2	2	rs139225751		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72431973	A	A	72431973	2	1	9	1	0	0	0	0	0	0	0	1	14165	639	23	1		1	SENP8	15	72431973	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	129268	72431973	30099419	14991	23142											
PKM2	5315	broad.mit.edu	37	chr15	72501062	72501062	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggacatcagatgccttgcGgatgaatgacgcaaacacca	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72501062	T	T	72501062	3	4	9	1	0	0	0	0	1	0	0	0	12072	1116	39	1	1054	1	PKM2	15	72501062	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69089	72501062	30030330	14992	23143											
PKM2	5315	broad.mit.edu	37	chr15	72502119	72502119	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccagccacaggatgttctCgtcacacttttccatgtagg	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72502119	A	A	72502119	4	1	9	1	0	0	0	0	0	1	0	0	12072	893	31	3	1334	3	PKM2	15	72502119	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1057	72502119	30029273	14993	23144											
PARP6	56965	broad.mit.edu	37	chr15	72549734	72549734	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagctccagacatgacgccCagtgtgtagaaggagaaaac	12	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72549734	G	G	72549734	2	3	9	1	0	0	0	0	0	0	0	1	11558	581	21	4		4	PARP6	15	72549734	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47615	72549734	29981658	14994	23145											
PARP6	56965	broad.mit.edu	37	chr15	72551924	72551924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaacagggaagggcttcGgagtgacaattttgacttga	13	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72551924	T	T	72551924	1	4	9	0	1	0	0	0	0	0	0	0	11558	1131	39	1		1	PARP6	15	72551924	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2190	72551924	29979468	14995	23146											
PARP6	56965	broad.mit.edu	37	chr15	72552028	72552028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtaaaaagacagacccCgtgaacctcctatgaagctg	10	10	0	5	rs115738537	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72552028	A	A	72552028	1	1	9	0	1	0	0	0	0	0	0	0	11558	667	23	1		1	PARP6	15	72552028	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	72552028	29979364	14996	23147											
PARP6	56965	broad.mit.edu	37	chr15	72552944	72552944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtacaggagatggaacGgttcatgaggcgcccaaccc	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72552944	T	T	72552944	3	4	9	1	0	0	0	0	1	0	0	0	11558	1116	39	1	1321	1	PARP6	15	72552944	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	916	72552944	29978448	14997	23148											
PARP6	56965	broad.mit.edu	37	chr15	72553982	72553982	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaactgtgcctcttctcCtgctgggtcttcaagaaatc	7	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72553982	A	A	72553982	3	1	9	1	0	0	0	0	1	0	0	0	11558	680	24	2	1494	2	PARP6	15	72553982	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1038	72553982	29977410	14998	23149											
CELF6	60677	broad.mit.edu	37	chr15	72580680	72580680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggttggtggctcgatcCacaaagactttagcagagac	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72580680	A	A	72580680	2	1	9	1	0	0	0	0	0	0	0	1	3250	581	21	2		2	CELF6	15	72580680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26698	72580680	29950712	14999	23150											
HEXA	3073	broad.mit.edu	37	chr15	72638928	72638928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagggccataggatatacGgttcaggtaccagggggcag	16	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72638928	T	T	72638928	3	4	9	1	0	0	0	0	1	0	0	0	7140	1116	39	1	335	1	HEXA	15	72638928	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58248	72638928	29892464	15000	23151											
ARIH1	25820	broad.mit.edu	37	chr15	72874456	72874456	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatgccacagaggtgctctCgggctaccttgaacgagata	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72874456	A	A	72874456	4	1	9	1	0	0	0	0	0	1	0	0	925	893	31	3	1567	3	ARIH1	15	72874456	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	235528	72874456	29656936	15001	23152											
GOLGA6B	55889	broad.mit.edu	37	chr15	72953663	72953663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcagaccataaaggagcGggcgctgctgaacgcacacg	13	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72953663	T	T	72953663	3	4	9	1	0	0	0	0	1	0	0	0	6622	1116	39	1	653	1	GOLGA6B	15	72953663	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	79207	72953663	29577729	15002	23153											
ADPGK	83440	broad.mit.edu	37	chr15	73052904	73052904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaagtccatcaggagcccCgttcctttccccacagaacc	7	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73052904	A	A	73052904	1	1	9	0	1	0	0	0	0	0	0	0	330	667	23	1		1	ADPGK	15	73052904	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	99241	73052904	29478488	15003	23154											
NEO1	4756	broad.mit.edu	37	chr15	73528817	73528817	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggagacaaccttacctactCtgtgttctacaccaaggaag	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73528817	A	A	73528817	3	1	9	1	0	0	0	0	1	0	0	0	10431	913	32	3	1451	3	NEO1	15	73528817	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	475913	73528817	29002575	15004	23155											
NEO1	4756	broad.mit.edu	37	chr15	73547068	73547068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctccagccacacaaaatGggcagattactggctacaag	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73547068	T	T	73547068	3	4	9	1	0	0	0	0	1	0	0	0	10431	1348	47	2	2040	2	NEO1	15	73547068	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18251	73547068	28984324	15005	23156											
NEO1	4756	broad.mit.edu	37	chr15	73547110	73547110	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgctaccgaaaggcctccCgaaagagtgatgtcactgag	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73547110	A	A	73547110	2	1	9	1	0	0	0	0	0	0	0	1	10431	644	23	1		1	NEO1	15	73547110	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	73547110	28984282	15006	23157											
NEO1	4756	broad.mit.edu	37	chr15	73566932	73566932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgtttggaagtttgtGggggttttagtttttttcct	12	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73566932	T	T	73566932	1	4	9	0	1	0	0	0	0	0	0	0	10431	1363	47	2		2	NEO1	15	73566932	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19822	73566932	28964460	15007	23158											
NEO1	4756	broad.mit.edu	37	chr15	73570438	73570438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtcacgccaaatgtgtGgggtcattattgacatgatt	11	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73570438	T	T	73570438	1	4	9	0	1	0	0	0	0	0	0	0	10431	1363	47	2		2	NEO1	15	73570438	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3506	73570438	28960954	15008	23159											
NEO1	4756	broad.mit.edu	37	chr15	73575427	73575427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcgctgtcttttgtaccCgtcgtaccacctctcaccag	6	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73575427	A	A	73575427	3	1	9	1	0	0	0	0	1	0	0	0	10431	652	23	1	3475	1	NEO1	15	73575427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4989	73575427	28955965	15009	23160											
HCN4	10021	broad.mit.edu	37	chr15	73624715	73624715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccctgccctggagctgCtggtgggcactgctctgcct	12	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73624715	A	A	73624715	1	1	9	0	1	0	0	0	0	0	0	0	7065	812	28	3		3	HCN4	15	73624715	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49288	73624715	28906677	15010	23161											
STOML1	9399	broad.mit.edu	37	chr15	74281128	74281128	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacggacagcacagcccCgtccttagaggccagctgtt	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74281128	A	A	74281128	3	1	9	1	0	0	0	0	1	0	0	0	15431	652	23	1	806	1	STOML1	15	74281128	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	656413	74281128	28250264	15011	23162											
PML	5371	broad.mit.edu	37	chr15	74325793	74325793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggcctgggtgctgccCgccagggtctgggcggtgcc	19	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74325793	A	A	74325793	1	1	9	0	1	0	0	0	0	0	0	0	12230	667	23	1		1	PML	15	74325793	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44665	74325793	28205599	15012	23163											
PML	5371	broad.mit.edu	37	chr15	74326811	74326811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgcatctccccttcccCgtttcagaggaacgcgttgt	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74326811	A	A	74326811	1	1	9	0	1	0	0	0	0	0	0	0	12230	667	23	1		1	PML	15	74326811	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1018	74326811	28204581	15013	23164											
STRA6	64220	broad.mit.edu	37	chr15	74476180	74476180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccaaggctgggtgtggcGggcaagggaggctcaccaag	19	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74476180	T	T	74476180	1	4	9	0	1	0	0	0	0	0	0	0	15440	1131	39	1		1	STRA6	15	74476180	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	149369	74476180	28055212	15014	23165											
STRA6	64220	broad.mit.edu	37	chr15	74486164	74486164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcctgctcctgtcctacGgctgaagcttctcaccagct	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74486164	T	T	74486164	3	4	9	1	0	0	0	0	1	0	0	0	15440	1116	39	1	1354	1	STRA6	15	74486164	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9984	74486164	28045228	15015	23166											
CYP11A1	1583	broad.mit.edu	37	chr15	74654080	74654080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccaggatttatgtgtcaGggtggtgacttcatatgcca	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74654080	T	T	74654080	1	4	9	0	1	0	0	0	0	0	0	0	4177	1015	35	2		2	CYP11A1	15	74654080	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	167916	74654080	27877312	15016	23167											
SEMA7A	8482	broad.mit.edu	37	chr15	74709717	74709717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacagctcactctcgcccCggatgcggcggaaccgaggg	14	14	2	0	rs55637216	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74709717	A	A	74709717	3	1	9	1	0	0	0	0	1	0	0	0	14156	652	23	1	1416	1	SEMA7A	15	74709717	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55637	74709717	27821675	15017	23168											
SEMA7A	8482	broad.mit.edu	37	chr15	74711285	74711285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtccacccggtcctgccCtacatggcctgaggaggaga	12	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74711285	A	A	74711285	3	1	9	1	0	0	0	0	1	0	0	0	14156	681	24	2	1865	2	SEMA7A	15	74711285	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1568	74711285	27820107	15018	23169											
CLK3	1198	broad.mit.edu	37	chr15	74912507	74912507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggggccataccggaccCgcaagcatgcccaccactgc	12	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74912507	A	A	74912507	3	1	9	1	0	0	0	0	1	0	0	0	3570	652	23	1	764	1	CLK3	15	74912507	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	201222	74912507	27618885	15019	23170											
CLK3	1198	broad.mit.edu	37	chr15	74919642	74919642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctggcctagagctggcaGgagagccagcttctcagtgc	15	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74919642	T	T	74919642	1	4	9	0	1	0	0	0	0	0	0	0	3570	1015	35	2		2	CLK3	15	74919642	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7135	74919642	27611750	15020	23171											
EDC3	80153	broad.mit.edu	37	chr15	74933012	74933012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgactacagaaaccaagtcCaaaccgggtatactctatcc	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74933012	A	A	74933012	1	1	9	0	1	0	0	0	0	0	0	0	4947	609	21	2		2	EDC3	15	74933012	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13370	74933012	27598380	15021	23172											
EDC3	80153	broad.mit.edu	37	chr15	74963885	74963885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcactgttgctgctgcGgggaaacggcaacatcctgg	14	10	0	1	rs148327581		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74963885	T	T	74963885	3	4	9	1	0	0	0	0	1	0	0	0	4947	1116	39	1	1151	1	EDC3	15	74963885	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30873	74963885	27567507	15022	23173											
CYP1A2	1544	broad.mit.edu	37	chr15	75042179	75042179	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctcaagggtttgaggcctCgggtccccaaaggcctgaaa	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75042179	A	A	75042179	2	1	9	1	0	0	0	0	0	0	0	1	4183	875	31	3		3	CYP1A2	15	75042179	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	78294	75042179	27489213	15023	23174											
CYP1A2	1544	broad.mit.edu	37	chr15	75042695	75042695	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattggtgccatgtgcttcGgacagcacttccctgagagt	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75042695	T	T	75042695	4	4	9	1	0	0	0	0	0	1	0	0	4183	1117	39	1	618	1	CYP1A2	15	75042695	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	516	75042695	27488697	15024	23175											
CYP1A2	1544	broad.mit.edu	37	chr15	75047180	75047180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctgagcggttcctcacCgccgatggcactgccattaa	11	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75047180	A	A	75047180	2	1	9	1	0	0	0	0	0	0	0	1	4183	639	23	1		1	CYP1A2	15	75047180	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4485	75047180	27484212	15025	23176											
LMAN1L	79748	broad.mit.edu	37	chr15	75105320	75105320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctcagcttcaaaggccCaaggctggcattgcctgggg	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75105320	A	A	75105320	3	1	9	1	0	0	0	0	1	0	0	0	8911	594	21	2	127	2	LMAN1L	15	75105320	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58140	75105320	27426072	15026	23177											
LMAN1L	79748	broad.mit.edu	37	chr15	75111646	75111646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacaggtaagagcagaaGggcagtgatgaataaatcac	13	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75111646	T	T	75111646	1	4	9	0	1	0	0	0	0	0	0	0	8911	1015	35	2		2	LMAN1L	15	75111646	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6326	75111646	27419746	15027	23178											
LMAN1L	79748	broad.mit.edu	37	chr15	75116594	75116594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaggacgccccaagcctGgggaaaggaaacggagcatg	15	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75116594	T	T	75116594	1	4	9	0	1	0	0	0	0	0	0	0	8911	1363	47	2		2	LMAN1L	15	75116594	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4948	75116594	27414798	15028	23179											
LMAN1L	79748	broad.mit.edu	37	chr15	75116822	75116822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctacgtgcacttcaggtGggccaccccgtgagcaggat	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75116822	T	T	75116822	1	4	9	0	1	0	0	0	0	0	0	0	8911	1363	47	2		2	LMAN1L	15	75116822	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	228	75116822	27414570	15029	23180											
SCAMP2	10066	broad.mit.edu	37	chr15	75137815	75137815	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcccacaccactcaccCgctgcaggaggaagactgag	10	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75137815	G	G	75137815	3	3	9	1	0	0	0	0	1	0	0	0	13983	666	23	4	143	4	SCAMP2	15	75137815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20993	75137815	27393577	15030	23181											
SCAMP2	10066	broad.mit.edu	37	chr15	75142842	75142842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagtctcaccccttgcccCggcctcactcacctaaaggc	6	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75142842	A	A	75142842	1	1	9	0	1	0	0	0	0	0	0	0	13983	667	23	1		1	SCAMP2	15	75142842	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5027	75142842	27388550	15031	23182											
SCAMP2	10066	broad.mit.edu	37	chr15	75143726	75143726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagagcatcttgcatatcCgctggtagtcggcagggatc	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75143726	A	A	75143726	3	1	9	1	0	0	0	0	1	0	0	0	13983	652	23	1	569	1	SCAMP2	15	75143726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	884	75143726	27387666	15032	23183											
C15orf17	57184	broad.mit.edu	37	chr15	75196926	75196926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgctgtgctcacagcGggcaccaaacaagcatttgg	11	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75196926	T	T	75196926	1	4	9	0	1	0	0	0	0	0	0	0	1796	1131	39	1		1	C15orf17	15	75196926	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53200	75196926	27334466	15033	23184											
NEIL1	79661	broad.mit.edu	37	chr15	75646555	75646555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataccgcccctgtgccaaccCaggctgattcctgaattatc	7	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75646555	A	A	75646555	1	1	9	0	1	0	0	0	0	0	0	0	10413	609	21	2		2	NEIL1	15	75646555	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	449629	75646555	26884837	15034	23185											
MAN2C1	4123	broad.mit.edu	37	chr15	75650577	75650577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccaagaggtattgtagtGggtaggtcgctgcaggtgcc	16	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75650577	T	T	75650577	3	4	9	1	0	0	0	0	1	0	0	0	9310	1348	47	2	634	2	MAN2C1	15	75650577	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4022	75650577	26880815	15035	23186											
MAN2C1	4123	broad.mit.edu	37	chr15	75651474	75651474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcggatgatgccattgtcCagagtcacggagccatcagt	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75651474	A	A	75651474	2	1	9	1	0	0	0	0	0	0	0	1	9310	581	21	2		2	MAN2C1	15	75651474	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	897	75651474	26879918	15036	23187											
SIN3A	25942	broad.mit.edu	37	chr15	75688768	75688768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcttcagcagacaagcGggaaagcttcttctgtattg	10	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75688768	T	T	75688768	3	4	9	1	0	0	0	0	1	0	0	0	14438	1116	39	1	1933	1	SIN3A	15	75688768	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37294	75688768	26842624	15037	23188											
SIN3A	25942	broad.mit.edu	37	chr15	75705332	75705332	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatcccattatcagatcGgggtggcctttgaatagctg	11	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75705332	T	T	75705332	2	4	9	1	0	0	0	0	0	0	0	1	14438	1103	39	1		1	SIN3A	15	75705332	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16564	75705332	26826060	15038	23189											
CSPG4	1464	broad.mit.edu	37	chr15	75968945	75968945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgcctctggctcctccCgatctgaaaccacccggagc	9	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75968945	A	A	75968945	3	1	9	1	0	0	0	0	1	0	0	0	3994	652	23	1	1057	1	CSPG4	15	75968945	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	263613	75968945	26562447	15039	23190											
UBE2Q2	92912	broad.mit.edu	37	chr15	76168527	76168527	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtggcttttgtgtttcaGggtgcagtgtctgggtcagt	15	6	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76168527	T	T	76168527	5	4	9	1	0	0	0	0	0	0	1	0	16996	1014	35	2	746	2	UBE2Q2	15	76168527	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	199582	76168527	26362865	15040	23191											
UBE2Q2	92912	broad.mit.edu	37	chr15	76171552	76171552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaatagttacaggaccCcatatacttccagtggggtg	10	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76171552	A	A	76171552	1	1	9	0	1	0	0	0	0	0	0	0	16996	638	22	2		2	UBE2Q2	15	76171552	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3025	76171552	26359840	15041	23192											
UBE2Q2	92912	broad.mit.edu	37	chr15	76175706	76175706	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgcttatttgctttttaGgataactttccatttgatcc	5	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76175706	T	T	76175706	5	4	9	1	0	0	0	0	0	0	1	0	16996	1014	35	2	995	2	UBE2Q2	15	76175706	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	4154	76175706	26355686	15042	23193											
C15orf27	123591	broad.mit.edu	37	chr15	76462222	76462222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaatagaggtaaagacCaatgtccacccccaaagccc	6	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76462222	A	A	76462222	1	1	9	0	1	0	0	0	0	0	0	0	1801	609	21	2		2	C15orf27	15	76462222	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	286516	76462222	26069170	15043	23194											
C15orf27	123591	broad.mit.edu	37	chr15	76518304	76518304	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagagtttgacttttacCaagaaaacatttcacacaga	5	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76518304	A	A	76518304	1	1	9	0	1	0	0	0	0	0	0	0	1801	609	21	2		2	C15orf27	15	76518304	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56082	76518304	26013088	15044	23195											
ISL2	64843	broad.mit.edu	37	chr15	76629127	76629127	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcgctccttcaactccgcGgggcagtaggagttagttag	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76629127	T	T	76629127	1	4	9	0	1	0	0	0	0	0	0	0	7927	1131	39	1		1	ISL2	15	76629127	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	110823	76629127	25902265	15045	23196											
SCAPER	49855	broad.mit.edu	37	chr15	76696942	76696942	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaaatatggccatcttGggattctcatccactgggcc	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76696942	T	T	76696942	2	4	9	1	0	0	0	0	0	0	0	1	13990	1335	47	2		2	SCAPER	15	76696942	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	67815	76696942	25834450	15046	23197											
SCAPER	49855	broad.mit.edu	37	chr15	77064249	77064249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagttcgaacataattgtctCgaatactgccagaattcttc	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77064249	A	A	77064249	3	1	9	1	0	0	0	0	1	0	0	0	13990	884	31	3	3212	3	SCAPER	15	77064249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	367307	77064249	25467143	15047	23198											
SGK269	79834	broad.mit.edu	37	chr15	77425576	77425576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttacccactacttcctccCgattctcaagtcctcgataa	3	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77425576	A	A	77425576	3	1	9	1	0	0	0	0	1	0	0	0	14324	652	23	1	1400	1	SGK269	15	77425576	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	361327	77425576	25105816	15048	23199											
SGK269	79834	broad.mit.edu	37	chr15	77471818	77471818	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatgtaaagagagatttGggccggactggcgtactctt	14	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77471818	T	T	77471818	2	4	9	1	0	0	0	0	0	0	0	1	14324	1335	47	2		2	SGK269	15	77471818	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46242	77471818	25059574	15049	23200											
SGK269	79834	broad.mit.edu	37	chr15	77472417	77472417	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatagcatttttggaactccGagcataagttggctcgtcat	10	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77472417	T	T	77472417	2	4	9	1	0	0	0	0	0	0	0	1	14324	1057	37	3		3	SGK269	15	77472417	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	599	77472417	25058975	15050	23201											
SGK269	79834	broad.mit.edu	37	chr15	77472529	77472529	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttaacagggatggttttGgaggaaatgtttgtagctgt	14	3	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77472529	T	T	77472529	2	4	9	1	0	0	0	0	0	0	0	1	14324	1335	47	2		2	SGK269	15	77472529	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	112	77472529	25058863	15051	23202											
SGK269	79834	broad.mit.edu	37	chr15	77472936	77472936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttatggttactgcttgccCagcaacatctgtagaggctt	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77472936	A	A	77472936	3	1	9	1	0	0	0	0	1	0	0	0	14324	594	21	2	3923	2	SGK269	15	77472936	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	407	77472936	25058456	15052	23203											
SGK269	79834	broad.mit.edu	37	chr15	77472967	77472967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaggctttactttcttcCttctcagtttgtacagcaat	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77472967	A	A	77472967	3	1	9	1	0	0	0	0	1	0	0	0	14324	680	24	2	3954	2	SGK269	15	77472967	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	77472967	25058425	15053	23204											
SGK269	79834	broad.mit.edu	37	chr15	77474095	77474095	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaggccggaaattgccCgtgttcctgatgcggtggtt	15	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77474095	A	A	77474095	2	1	9	1	0	0	0	0	0	0	0	1	14324	639	23	1		1	SGK269	15	77474095	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1128	77474095	25057297	15054	23205											
HMG20A	10363	broad.mit.edu	37	chr15	77771598	77771598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattattttagctaatcccCaagacaatgaaaacttcata	4	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77771598	A	A	77771598	3	1	9	1	0	0	0	0	1	0	0	0	7288	595	21	2	1015	2	HMG20A	15	77771598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	297503	77771598	24759794	15055	23206											
TBC1D2B	23102	broad.mit.edu	37	chr15	78295581	78295581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagccagccgctctaccGccaccaacgctgctgacggt	12	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78295581	T	T	78295581	1	4	9	0	1	0	0	0	0	0	0	0	15738	1102	38	3		3	TBC1D2B	15	78295581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	523983	78295581	24235811	15056	23207											
IDH3A	3419	broad.mit.edu	37	chr15	78457365	78457365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggattgatcggaggtctcGgtgtgacaccaagtggcaac	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78457365	T	T	78457365	3	4	9	1	0	0	0	0	1	0	0	0	7566	1116	39	1	845	1	IDH3A	15	78457365	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	161784	78457365	24074027	15057	23208											
IDH3A	3419	broad.mit.edu	37	chr15	78458639	78458639	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgctacaattaaggacGgaaaggtaacaggaatcttg	11	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78458639	T	T	78458639	4	4	9	1	0	0	0	0	0	1	0	0	7566	1117	39	1	1050	1	IDH3A	15	78458639	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1274	78458639	24072753	15058	23209											
ACSBG1	23205	broad.mit.edu	37	chr15	78526732	78526732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggttttcaatttttcttGggtggtcctcacaatcatgt	8	9	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78526732	T	T	78526732	3	4	9	1	0	0	0	0	1	0	0	0	173	1357	47	2	2118	2	ACSBG1	15	78526732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68093	78526732	24004660	15059	23210											
ACSBG1	23205	broad.mit.edu	37	chr15	78526851	78526851	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgcgtggcatctgcctcGggcttccactgaagacagct	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78526851	T	T	78526851	1	4	9	0	1	0	0	0	0	0	0	0	173	1131	39	1		1	ACSBG1	15	78526851	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	119	78526851	24004541	15060	23211											
WDR61	80349	broad.mit.edu	37	chr15	78587312	78587312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgtttgaagagaatacCgtactaaaaaagaacagaag	8	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78587312	A	A	78587312	3	1	9	1	0	0	0	0	1	0	0	0	17439	652	23	1	937	1	WDR61	15	78587312	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60461	78587312	23944080	15061	23212											
WDR61	80349	broad.mit.edu	37	chr15	78587348	78587348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagccacattaaacccatGgtcagatttcagatgtctca	7	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78587348	T	T	78587348	1	4	9	0	1	0	0	0	0	0	0	0	17439	1363	47	2		2	WDR61	15	78587348	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	78587348	23944044	15062	23213											
CRABP1	1381	broad.mit.edu	37	chr15	78640311	78640311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaccagaatttatgtcCgagagtgaaggcagctggct	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78640311	A	A	78640311	2	1	9	1	0	0	0	0	0	0	0	1	3875	644	23	1		1	CRABP1	15	78640311	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	52963	78640311	23891081	15063	23214											
IREB2	3658	broad.mit.edu	37	chr15	78755285	78755285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctgccttactcaatacGggtcttgttggaagctgctg	11	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78755285	T	T	78755285	3	4	9	1	0	0	0	0	1	0	0	0	7896	1116	39	1	138	1	IREB2	15	78755285	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	114974	78755285	23776107	15064	23215											
IREB2	3658	broad.mit.edu	37	chr15	78755407	78755407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgccctttttccctgccCgtgttcttcttcaagatttt	6	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78755407	A	A	78755407	3	1	9	1	0	0	0	0	1	0	0	0	7896	652	23	1	260	1	IREB2	15	78755407	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122	78755407	23775985	15065	23216											
IREB2	3658	broad.mit.edu	37	chr15	78786530	78786530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccagaaagaaggtatccCactgattattttagcaggaa	9	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78786530	A	A	78786530	3	1	9	1	0	0	0	0	1	0	0	0	7896	594	21	2	2597	2	IREB2	15	78786530	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31123	78786530	23744862	15066	23217											
CHRNA5	1138	broad.mit.edu	37	chr15	78879053	78879053	+	Intron	SNP	G	T	T													tatgtgtgtaaaattcaaacGggcacccaattagtgactgg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78879053	T	T	78879053	1	4	9	0	1	0	0	0	0	0	0	0	3417	1131	39	1		1	CHRNA5	15	78879053	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	92523	78879053	23652339	15067	23218	154	2									
CHRNA5	1138	broad.mit.edu	37	chr15	78879060	78879060	+	Intron	SNP	C	A	A													gtaaaattcaaacgggcaccCaattagtgactgggacacct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78879060	A	A	78879060	1	1	9	0	1	0	0	0	0	0	0	0	3417	609	21	2		2	CHRNA5	15	78879060	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	78879060	23652332	15068	23219	154	2									
CHRNA3	1136	broad.mit.edu	37	chr15	78909409	78909409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccagatcttctgtgcagGgacacgcatgaactctgccc	9	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78909409	T	T	78909409	3	4	9	1	0	0	0	0	1	0	0	0	3415	1232	43	2	1280	2	CHRNA3	15	78909409	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30349	78909409	23621983	15069	23220											
ADAMTS7	11173	broad.mit.edu	37	chr15	79058002	79058002	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctcgctccagtttccCgcttgccagccggcgttcct	9	18	0	0	rs143941580		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79058002	A	A	79058002	2	1	9	1	0	0	0	0	0	0	0	1	271	639	23	1		1	ADAMTS7	15	79058002	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	148593	79058002	23473390	15070	23221											
CTSH	1512	broad.mit.edu	37	chr15	79223846	79223846	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtccaccagctgctgttcCgcctggaagaaggacacaac	10	14	0	1	rs140674602	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79223846	A	A	79223846	2	1	9	1	0	0	0	0	0	0	0	1	4070	639	23	1		1	CTSH	15	79223846	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	165844	79223846	23307546	15071	23222											
RASGRF1	5923	broad.mit.edu	37	chr15	79265616	79265616	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgggcttcaacgcccccCttcccctgcctggctggggg	12	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79265616	A	A	79265616	1	1	9	0	1	0	0	0	0	0	0	0	13180	696	24	2		2	RASGRF1	15	79265616	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	41770	79265616	23265776	15072	23223											
RASGRF1	5923	broad.mit.edu	37	chr15	79284001	79284001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacagtgcctgaggaagcGgggggaggcgggtggtgcct	21	7	0	2	rs7170672	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79284001	T	T	79284001	1	4	9	0	1	0	0	0	0	0	0	0	13180	1131	39	1		1	RASGRF1	15	79284001	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18385	79284001	23247391	15073	23224											
RASGRF1	5923	broad.mit.edu	37	chr15	79284083	79284083	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagcagggtcagctgctcCgcgatctccagggctgagtg	14	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79284083	A	A	79284083	2	1	9	1	0	0	0	0	0	0	0	1	13180	639	23	1		1	RASGRF1	15	79284083	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	79284083	23247309	15074	23225											
RASGRF1	5923	broad.mit.edu	37	chr15	79293961	79293961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgacctactgccctctccCaaactggaaatctatttgtg	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79293961	A	A	79293961	1	1	9	0	1	0	0	0	0	0	0	0	13180	609	21	2		2	RASGRF1	15	79293961	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9878	79293961	23237431	15075	23226											
RASGRF1	5923	broad.mit.edu	37	chr15	79356892	79356892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcaagaagaagacatctcCaattaccagagtgtccatgg	8	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79356892	A	A	79356892	1	1	9	0	1	0	0	0	0	0	0	0	13180	609	21	2		2	RASGRF1	15	79356892	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	62931	79356892	23174500	15076	23227											
KIAA1024	23251	broad.mit.edu	37	chr15	79748657	79748657	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttctacacagcttgtctCgatcccaattttccagccac	4	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79748657	A	A	79748657	2	1	9	1	0	0	0	0	0	0	0	1	8275	871	31	3		3	KIAA1024	15	79748657	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	391765	79748657	22782735	15077	23228											
KIAA1024	23251	broad.mit.edu	37	chr15	79750450	79750450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttgacaagcgagggtcCgtctgatgacagtgcctctc	11	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79750450	A	A	79750450	3	1	9	1	0	0	0	0	1	0	0	0	8275	652	23	1	1963	1	KIAA1024	15	79750450	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1793	79750450	22780942	15078	23229											
KIAA1024	23251	broad.mit.edu	37	chr15	79750551	79750551	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctctgatgctagcGggagcaacagtgaaagcctg	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79750551	C	C	79750551	3	2	9	1	0	0	0	0	1	0	0	0	8275	1116	39	4	2064	4	KIAA1024	15	79750551	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101	79750551	22780841	15079	23230											
ZFAND6	54469	broad.mit.edu	37	chr15	80412835	80412835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaatggtagaataagccCacctggtaagtaattctagt	9	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80412835	A	A	80412835	3	1	9	1	0	0	0	0	1	0	0	0	17757	594	21	2	151	2	ZFAND6	15	80412835	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	662284	80412835	22118557	15080	23231											
ZFAND6	54469	broad.mit.edu	37	chr15	80423421	80423421	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagttttctgtgctaataaAttcctcagtatcctctgaat	5	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80423421	C	C	80423421	1	2	9	0	1	0	0	0	0	0	0	0	17757	116	4	5		5	ZFAND6	15	80423421	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	10586	80423421	22107971	15081	23232											
ZFAND6	54469	broad.mit.edu	37	chr15	80429863	80429863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttactgtggtgtacacCgttactcagatgtacacaat	8	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80429863	A	A	80429863	3	1	9	1	0	0	0	0	1	0	0	0	17757	652	23	1	538	1	ZFAND6	15	80429863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6442	80429863	22101529	15082	23233											
FAH	2184	broad.mit.edu	37	chr15	80451990	80451990	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagagtttgagttagcGggagagaagtggcaagggct	17	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80451990	C	C	80451990	1	2	9	0	1	0	0	0	0	0	0	0	5417	1131	39	4		4	FAH	15	80451990	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22127	80451990	22079402	15083	23234											
FAH	2184	broad.mit.edu	37	chr15	80460616	80460616	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttattccagctaagcctccCgtatatggtgcctgcaagct	9	12	0	0	rs149988384	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80460616	A	A	80460616	2	1	9	1	0	0	0	0	0	0	0	1	5417	639	23	1		1	FAH	15	80460616	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8626	80460616	22070776	15084	23235											
FAH	2184	broad.mit.edu	37	chr15	80465391	80465391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggagtatgtccctctcGggccattccttgggaagagt	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80465391	T	T	80465391	3	4	9	1	0	0	0	0	1	0	0	0	5417	1116	39	1	776	1	FAH	15	80465391	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4775	80465391	22066001	15085	23236											
ARNT2	9915	broad.mit.edu	37	chr15	80767307	80767307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaaagttgaatcatcctGggtctgtcagtgtattgtgc	11	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80767307	T	T	80767307	1	4	9	0	1	0	0	0	0	0	0	0	970	1363	47	2		2	ARNT2	15	80767307	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	301916	80767307	21764085	15086	23237											
ARNT2	9915	broad.mit.edu	37	chr15	80806774	80806774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgcatgtaaattccacGggaactgggtgctgctcata	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80806774	T	T	80806774	1	4	9	0	1	0	0	0	0	0	0	0	970	1131	39	1		1	ARNT2	15	80806774	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	39467	80806774	21724618	15087	23238											
ARNT2	9915	broad.mit.edu	37	chr15	80866559	80866559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatcgtatgacttatccCaggtgagtttctggaaaacc	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80866559	A	A	80866559	3	1	9	1	0	0	0	0	1	0	0	0	970	595	21	2	1437	2	ARNT2	15	80866559	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	59785	80866559	21664833	15088	23239											
ARNT2	9915	broad.mit.edu	37	chr15	80873622	80873622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactcagtcatctccctttGggattggaacgagccacacc	9	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80873622	T	T	80873622	3	4	9	1	0	0	0	0	1	0	0	0	970	1348	47	2	1861	2	ARNT2	15	80873622	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7063	80873622	21657770	15089	23240											
ARNT2	9915	broad.mit.edu	37	chr15	80883865	80883865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaggtctcacagaaccacGggatggcttttaaaggaagt	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80883865	T	T	80883865	1	4	9	0	1	0	0	0	0	0	0	0	970	1131	39	1		1	ARNT2	15	80883865	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10243	80883865	21647527	15090	23241											
ARNT2	9915	broad.mit.edu	37	chr15	80889562	80889562	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtggtctccccactccCggcagcactttaggcagccc	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80889562	A	A	80889562	1	1	9	0	1	0	0	0	0	0	0	0	970	667	23	1		1	ARNT2	15	80889562	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	5697	80889562	21641830	15091	23242											
KIAA1199	57214	broad.mit.edu	37	chr15	81176579	81176579	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtatttgaacgcggtgccCgatggcaggatcctttctgt	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81176579	A	A	81176579	2	1	9	1	0	0	0	0	0	0	0	1	8283	639	23	1		1	KIAA1199	15	81176579	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	287017	81176579	21354813	15092	23243											
KIAA1199	57214	broad.mit.edu	37	chr15	81181066	81181066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaggctctgctgctgcccGggtattcaaattgttccaga	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81181066	T	T	81181066	3	4	9	1	0	0	0	0	1	0	0	0	8283	1116	39	1	919	1	KIAA1199	15	81181066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4487	81181066	21350326	15093	23244											
KIAA1199	57214	broad.mit.edu	37	chr15	81241077	81241077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatggggagccatggaacGgggtggggcagccgtcctct	19	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81241077	T	T	81241077	1	4	9	0	1	0	0	0	0	0	0	0	8283	1131	39	1		1	KIAA1199	15	81241077	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	60011	81241077	21290315	15094	23245											
IL16	3603	broad.mit.edu	37	chr15	81578184	81578184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacaggtaacacccactGggttatcctcttcttctcag	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81578184	T	T	81578184	1	4	9	0	1	0	0	0	0	0	0	0	7703	1363	47	2		2	IL16	15	81578184	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	337107	81578184	20953208	15095	23246											
IL16	3603	broad.mit.edu	37	chr15	81593775	81593775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttcagtctggtcagtcCgttatctccctgctgagctc	8	15	4	1	rs141986262		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81593775	A	A	81593775	2	1	9	1	0	0	0	0	0	0	0	1	7703	639	23	1		1	IL16	15	81593775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15591	81593775	20937617	15096	23247											
TMC3	342125	broad.mit.edu	37	chr15	81644235	81644235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtcctgctcacagcacCacgatgcaaagacaacacta	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81644235	A	A	81644235	1	1	9	0	1	0	0	0	0	0	0	0	16109	609	21	2		2	TMC3	15	81644235	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50460	81644235	20887157	15097	23248											
TMC3	342125	broad.mit.edu	37	chr15	81650575	81650575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccggtagccagctctccCgatcttcctctccctgccgt	8	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81650575	A	A	81650575	3	1	9	1	0	0	0	0	1	0	0	0	16109	652	23	1	2708	1	TMC3	15	81650575	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6340	81650575	20880817	15098	23249											
TMC3	342125	broad.mit.edu	37	chr15	81650668	81650668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgtcatttctgcttccCgttcccaggtctcagaactg	8	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81650668	A	A	81650668	1	1	9	0	1	0	0	0	0	0	0	0	16109	667	23	1		1	TMC3	15	81650668	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	93	81650668	20880724	15099	23250											
MEX3B	84206	broad.mit.edu	37	chr15	82336933	82336933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagtattggtcttcgccCgcagcgctttgattttacaa	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82336933	A	A	82336933	3	1	9	1	0	0	0	0	1	0	0	0	9603	652	23	1	1435	1	MEX3B	15	82336933	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	686265	82336933	20194459	15100	23251											
EFTUD1	79631	broad.mit.edu	37	chr15	82422815	82422815	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgcgttcatgtacttccGggcttggttctcagagtcag	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82422815	T	T	82422815	2	4	9	1	0	0	0	0	0	0	0	1	5000	1115	39	1		1	EFTUD1	15	82422815	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85882	82422815	20108577	15101	23252											
EFTUD1	79631	broad.mit.edu	37	chr15	82512461	82512461	+	Missense_Mutation	SNP	C	A	A													acatgtttcaatggcactccCatcttgggtgggctccaagg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82512461	A	A	82512461	3	1	9	1	0	0	0	0	1	0	0	0	5000	594	21	2	1992	2	EFTUD1	15	82512461	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89646	82512461	20018931	15102	23253	155	2									
EFTUD1	79631	broad.mit.edu	37	chr15	82512471	82512471	+	Silent	SNP	G	T	T													atggcactcccatcttgggtGggctccaagggtgcctgtcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82512471	T	T	82512471	2	4	9	1	0	0	0	0	0	0	0	1	5000	1335	47	2		2	EFTUD1	15	82512471	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10	82512471	20018921	15103	23254	155	2									
EFTUD1	79631	broad.mit.edu	37	chr15	82523170	82523170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatgaccaacaaccaaaaGggacatataccacattacct	4	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82523170	T	T	82523170	1	4	9	0	1	0	0	0	0	0	0	0	5000	1015	35	2		2	EFTUD1	15	82523170	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10699	82523170	20008222	15104	23255											
EFTUD1	79631	broad.mit.edu	37	chr15	82530692	82530692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtaaacaccacatttccCtgttctggagagaagtaaag	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82530692	A	A	82530692	3	1	9	1	0	0	0	0	1	0	0	0	5000	680	24	2	2731	2	EFTUD1	15	82530692	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7522	82530692	20000700	15105	23256											
FAM154B	283726	broad.mit.edu	37	chr15	82574880	82574880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgaaagttttcaaccatGggaaatcccaccacctgagg	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82574880	T	T	82574880	3	4	9	1	0	0	0	0	1	0	0	0	5510	1357	47	2	684	2	FAM154B	15	82574880	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44188	82574880	19956512	15106	23257											
FSD2	123722	broad.mit.edu	37	chr15	83447635	83447635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgttttcaggaatttccCgagtctgttggtataaaaag	9	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83447635	A	A	83447635	3	1	9	1	0	0	0	0	1	0	0	0	6131	652	23	1	1287	1	FSD2	15	83447635	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	872755	83447635	19083757	15107	23258											
FSD2	123722	broad.mit.edu	37	chr15	83455532	83455532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccagtgcttcattgagtGggatcacttcatgctcctta	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83455532	T	T	83455532	3	4	9	1	0	0	0	0	1	0	0	0	6131	1348	47	2	1686	2	FSD2	15	83455532	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7897	83455532	19075860	15108	23259											
WHAMM	123720	broad.mit.edu	37	chr15	83499372	83499372	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgcctagctcaatctgtcCgaaacacctctggctcagaa	7	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83499372	A	A	83499372	2	1	9	1	0	0	0	0	0	0	0	1	17488	644	23	1		1	WHAMM	15	83499372	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43840	83499372	19032020	15109	23260											
HOMER2	9455	broad.mit.edu	37	chr15	83544130	83544130	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttttggtgaaggtcatattCggtgtgattgtgctgtttat	13	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83544130	T	T	83544130	2	4	9	1	0	0	0	0	0	0	0	1	7346	871	31	4		4	HOMER2	15	83544130	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44758	83544130	18987262	15110	23261											
C15orf40	123207	broad.mit.edu	37	chr15	83674432	83674432	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcttcaccaccttttcacGagatttaccaccctggacca	5	15	2	1	rs78910691	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83674432	T	T	83674432	1	4	9	0	1	0	0	0	0	0	0	0	1807	1058	37	3		3	C15orf40	15	83674432	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	130302	83674432	18856960	15111	23262											
BTBD1	53339	broad.mit.edu	37	chr15	83698854	83698854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatggtaactgctaccccCactctacccccgcatcccca	4	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83698854	A	A	83698854	1	1	9	0	1	0	0	0	0	0	0	0	1546	609	21	2		2	BTBD1	15	83698854	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24422	83698854	18832538	15112	23263											
BTBD1	53339	broad.mit.edu	37	chr15	83710635	83710635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccaaaaagtcgactttctCgaatactgagtgtgtctctc	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83710635	A	A	83710635	3	1	9	1	0	0	0	0	1	0	0	0	1546	884	31	3	761	3	BTBD1	15	83710635	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11781	83710635	18820757	15113	23264											
SH3GL3	6457	broad.mit.edu	37	chr15	84245390	84245390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttacgattataaaaagaaacGagtaggtaagataccagacg	9	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84245390	T	T	84245390	3	4	9	1	0	0	0	0	1	0	0	0	14365	1058	37	3	543	3	SH3GL3	15	84245390	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	534755	84245390	18286002	15114	23265											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84373179	84373179	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagcctatttccttccCgagtttgcactttctcctca	6	15	2	0	rs140402380		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84373179	A	A	84373179	2	1	9	1	0	0	0	0	0	0	0	1	276	639	23	1		1	ADAMTSL3	15	84373179	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	127789	84373179	18158213	15115	23266											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84488596	84488596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagaagatttcagagccCagcagtgctcagcctacaat	9	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84488596	A	A	84488596	3	1	9	1	0	0	0	0	1	0	0	0	276	595	21	2	415	2	ADAMTSL3	15	84488596	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115417	84488596	18042796	15116	23267											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84659825	84659825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaacatagtttcctgctcCctttgaattaagaggcacct	6	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84659825	A	A	84659825	1	1	9	0	1	0	0	0	0	0	0	0	276	638	22	2		2	ADAMTSL3	15	84659825	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	171229	84659825	17871567	15117	23268											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84690224	84690224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtggtcatttgggagccCgcattcagagaccccagtgt	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84690224	A	A	84690224	3	1	9	1	0	0	0	0	1	0	0	0	276	652	23	1	4434	1	ADAMTSL3	15	84690224	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30399	84690224	17841168	15118	23269											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84690239	84690239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccgcattcagagacccCagtgtgtgatggccaatggg	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84690239	A	A	84690239	3	1	9	1	0	0	0	0	1	0	0	0	276	595	21	2	4449	2	ADAMTSL3	15	84690239	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	84690239	17841153	15119	23270											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84690268	84690268	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggccaatgggcaggaagtGagtgaggccctgtgtgatca	16	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84690268	T	T	84690268	2	4	9	1	0	0	0	0	0	0	0	1	276	1277	45	3		3	ADAMTSL3	15	84690268	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29	84690268	17841124	15120	23271											
ZNF592	9640	broad.mit.edu	37	chr15	85326621	85326621	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggatgccactcgattcttcGgggaagctttggagttcaac	12	10	2	0	rs138885903	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85326621	T	T	85326621	3	4	9	1	0	0	0	0	1	0	0	0	18149	1116	39	1	717	1	ZNF592	15	85326621	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	636353	85326621	17204771	15121	23272											
ALPK3	57538	broad.mit.edu	37	chr15	85407771	85407771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagtcttactgttctcGggaatggggctgtgctgagg	16	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85407771	T	T	85407771	3	4	9	1	0	0	0	0	1	0	0	0	546	1116	39	1	5250	1	ALPK3	15	85407771	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81150	85407771	17123621	15122	23273											
SLC28A1	9154	broad.mit.edu	37	chr15	85461730	85461730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctgcctctaacctgcGgtcctatgatctccttcccg	7	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85461730	T	T	85461730	1	4	9	0	1	0	0	0	0	0	0	0	14645	1131	39	1		1	SLC28A1	15	85461730	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53959	85461730	17069662	15123	23274											
PDE8A	5151	broad.mit.edu	37	chr15	85619136	85619136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaacacagttattgttGgtgtagtacgcaggtaaact	10	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85619136	T	T	85619136	3	4	9	1	0	0	0	0	1	0	0	0	11747	1348	47	2	492	2	PDE8A	15	85619136	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	157406	85619136	16912256	15124	23275											
AKAP13	11214	broad.mit.edu	37	chr15	86124092	86124092	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagataaggataaagcGgtgacctgttcctctattaa	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86124092	T	T	86124092	2	4	9	1	0	0	0	0	0	0	0	1	449	1103	39	1		1	AKAP13	15	86124092	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	504956	86124092	16407300	15125	23276											
AKAP13	11214	broad.mit.edu	37	chr15	86236543	86236543	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagataagattaaggagaaGgagaaagattctaaagacaa	10	2	1	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86236543	T	T	86236543	3	4	9	1	0	0	0	0	1	0	0	0	449	991	35	2	5457	2	AKAP13	15	86236543	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	112451	86236543	16294849	15126	23277											
AKAP13	11214	broad.mit.edu	37	chr15	86265528	86265528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catattgcttgtaactcagcGgattaccaagtacccagttt	7	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86265528	T	T	86265528	3	4	9	1	0	0	0	0	1	0	0	0	449	1116	39	1	6610	1	AKAP13	15	86265528	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28985	86265528	16265864	15127	23278											
AGBL1	123624	broad.mit.edu	37	chr15	87066060	87066061	+	Missense_Mutation	DNP	GG	TC	TC													gccacagatgctcactgagcGgggaagatttgaacagacaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	87066061	TC	TC	87066060	3	4	9	1	0	0	0	0	1	0	0	0	375	1116	39	1	2503	1	AGBL1	15	87066060	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	800532	87066060	15465332	15128	23279											
DET1	55070	broad.mit.edu	37	chr15	89074819	89074819	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacattctgatggaacactcGgacttggtgccagtgggtac	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89074819	T	T	89074819	2	4	9	1	0	0	0	0	0	0	0	1	4490	1124	39	1		1	DET1	15	89074819	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2008759	89074819	13456573	15129	23280											
DET1	55070	broad.mit.edu	37	chr15	89074860	89074860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttgcctgaactgatcCgccggcgttccaagcggtga	12	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89074860	A	A	89074860	3	1	9	1	0	0	0	0	1	0	0	0	4490	652	23	1	1591	1	DET1	15	89074860	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	89074860	13456532	15130	23281											
ACAN	176	broad.mit.edu	37	chr15	89382107	89382107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccactgaagggcgcgtgcGggtcaacagtgcctatcagg	16	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89382107	T	T	89382107	3	4	9	1	0	0	0	0	1	0	0	0	117	1116	39	1	290	1	ACAN	15	89382107	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	307247	89382107	13149285	15131	23282											
ACAN	176	broad.mit.edu	37	chr15	89398670	89398670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctctgcctctggagttGgggatctcagtggacttcct	14	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89398670	T	T	89398670	3	4	9	1	0	0	0	0	1	0	0	0	117	1348	47	2	2896	2	ACAN	15	89398670	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16563	89398670	13132722	15132	23283											
ACAN	176	broad.mit.edu	37	chr15	89400107	89400107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagtagatgagatcagtGggcttccttctggagaagtt	14	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89400107	T	T	89400107	3	4	9	1	0	0	0	0	1	0	0	0	117	1348	47	2	4333	2	ACAN	15	89400107	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1437	89400107	13131285	15133	23284											
ABHD2	11057	broad.mit.edu	37	chr15	89695061	89695061	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattcgacctcttcgagccCttggctgagcactgtgttgg	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89695061	A	A	89695061	2	1	9	1	0	0	0	0	0	0	0	1	82	668	24	2		2	ABHD2	15	89695061	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	294954	89695061	12836331	15134	23285											
RLBP1	6017	broad.mit.edu	37	chr15	89758364	89758364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactcggccatacttgtccCgactagagaggacaccaggg	11	14	0	1	rs137853290		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89758364	A	A	89758364	3	1	9	1	0	0	0	0	1	0	0	0	13499	652	23	1	517	1	RLBP1	15	89758364	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63303	89758364	12773028	15135	23286											
FANCI	55215	broad.mit.edu	37	chr15	89837041	89837041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgatgtttgtccttagcGgtctcttttttgttttttac	7	7	2	1	rs149052081	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89837041	T	T	89837041	1	4	9	0	1	0	0	0	0	0	0	0	5726	1131	39	1		1	FANCI	15	89837041	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78677	89837041	12694351	15136	23287											
FANCI	55215	broad.mit.edu	37	chr15	89856249	89856249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatgcttgttggtgaaccCgaaaacatgaagcggaagaa	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89856249	A	A	89856249	1	1	9	0	1	0	0	0	0	0	0	0	5726	667	23	1		1	FANCI	15	89856249	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19208	89856249	12675143	15137	23288											
POLG	5428	broad.mit.edu	37	chr15	89862295	89862295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgccccccttccatgccCgttcagcaaccacctcccac	5	22	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89862295	A	A	89862295	3	1	9	1	0	0	0	0	1	0	0	0	12295	652	23	1	595	1	POLG	15	89862295	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6046	89862295	12669097	15138	23289											
POLG	5428	broad.mit.edu	37	chr15	89865206	89865206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatacctgatcacagcacGgggcagagctgacctgggca	12	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89865206	T	T	89865206	3	4	9	1	0	0	0	0	1	0	0	0	12295	1116	39	1	1288	1	POLG	15	89865206	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2911	89865206	12666186	15139	23290											
POLG	5428	broad.mit.edu	37	chr15	89870461	89870461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacgacttcttcatctccCgctggagctcctcataagtg	7	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89870461	A	A	89870461	3	1	9	1	0	0	0	0	1	0	0	0	12295	652	23	1	2417	1	POLG	15	89870461	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5255	89870461	12660931	15140	23291											
C15orf42	90381	broad.mit.edu	37	chr15	90126083	90126083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgaacctcatctttctcCgtggatttcaatgctgccaa	7	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90126083	A	A	90126083	3	1	9	1	0	0	0	0	1	0	0	0	1809	652	23	1	827	1	C15orf42	15	90126083	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	255622	90126083	12405309	15141	23292											
C15orf42	90381	broad.mit.edu	37	chr15	90152103	90152103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaagagatcactaaagcGggggttgcctagaagccatt	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90152103	T	T	90152103	3	4	9	1	0	0	0	0	1	0	0	0	1809	1116	39	1	2850	1	C15orf42	15	90152103	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26020	90152103	12379289	15142	23293											
C15orf42	90381	broad.mit.edu	37	chr15	90166945	90166945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaactccgttgtatactcCagaaaggctgcagaagtccc	8	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90166945	A	A	90166945	3	1	9	1	0	0	0	0	1	0	0	0	1809	594	21	2	3482	2	C15orf42	15	90166945	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14842	90166945	12364447	15143	23294											
C15orf42	90381	broad.mit.edu	37	chr15	90167854	90167854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtctcctcctgaaagacGgggctacccaggccctggtc	11	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90167854	T	T	90167854	3	4	9	1	0	0	0	0	1	0	0	0	1809	1116	39	1	4391	1	C15orf42	15	90167854	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	909	90167854	12363538	15144	23295											
C15orf42	90381	broad.mit.edu	37	chr15	90170141	90170141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccaatttttttcagttcGgtcctctgtgactcctgcat	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90170141	T	T	90170141	1	4	9	0	1	0	0	0	0	0	0	0	1809	1131	39	1		1	C15orf42	15	90170141	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2287	90170141	12361251	15145	23296											
C15orf42	90381	broad.mit.edu	37	chr15	90170280	90170280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagcagaacttatacacGgaagaagctcatgggaacct	9	10	2	2	rs145064587		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90170280	T	T	90170280	3	4	9	1	0	0	0	0	1	0	0	0	1809	1116	39	1	5782	1	C15orf42	15	90170280	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	139	90170280	12361112	15146	23297											
KIF7	374654	broad.mit.edu	37	chr15	90188211	90188211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgatgagaagtccccctcGggtgagaggcccacctgatg	13	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90188211	T	T	90188211	1	4	9	0	1	0	0	0	0	0	0	0	8379	1131	39	1		1	KIF7	15	90188211	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17931	90188211	12343181	15147	23298											
KIF7	374654	broad.mit.edu	37	chr15	90188303	90188303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgttgatagccagctccCggatcttctgctgggcctgg	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90188303	A	A	90188303	3	1	9	1	0	0	0	0	1	0	0	0	8379	652	23	1	1939	1	KIF7	15	90188303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	90188303	12343089	15148	23299											
PEX11A	8800	broad.mit.edu	37	chr15	90226613	90226613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcctaaaaacaccctaacGggtcttcagcttcatctgag	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90226613	T	T	90226613	3	4	9	1	0	0	0	0	1	0	0	0	11832	1116	39	1	8	1	PEX11A	15	90226613	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38310	90226613	12304779	15149	23300											
WDR93	56964	broad.mit.edu	37	chr15	90270576	90270576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtgagcctcctaatccCgggaaagccagggagcatcc	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90270576	A	A	90270576	1	1	9	0	1	0	0	0	0	0	0	0	17467	667	23	1		1	WDR93	15	90270576	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43963	90270576	12260816	15150	23301											
WDR93	56964	broad.mit.edu	37	chr15	90281421	90281421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggataacatggccttccccCaagcactgccactggagaag	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90281421	A	A	90281421	3	1	9	1	0	0	0	0	1	0	0	0	17467	595	21	2	1973	2	WDR93	15	90281421	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10845	90281421	12249971	15151	23302											
ANPEP	290	broad.mit.edu	37	chr15	90346433	90346433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagcatctcaagacccCaacaggatggctgtggaggg	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90346433	A	A	90346433	1	1	9	0	1	0	0	0	0	0	0	0	710	609	21	2		2	ANPEP	15	90346433	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	65012	90346433	12184959	15152	23303											
IDH2	3418	broad.mit.edu	37	chr15	90630708	90630708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatgtccttgaaacgccCatcgtaggctttcagtatgg	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90630708	A	A	90630708	3	1	9	1	0	0	0	0	1	0	0	0	7565	594	21	2	604	2	IDH2	15	90630708	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	284275	90630708	11900684	15153	23304											
IDH2	3418	broad.mit.edu	37	chr15	90631630	90631630	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgcccacgccgcctgcGgggaagttgtacacttccca	10	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90631630	T	T	90631630	2	4	9	1	0	0	0	0	0	0	0	1	7565	1103	39	1		1	IDH2	15	90631630	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	922	90631630	11899762	15154	23305											
C15orf58	390637	broad.mit.edu	37	chr15	90784382	90784382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtttcgctaccgtctacGggagctacagacccaaatcc	9	14	1	1	rs142483004		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90784382	T	T	90784382	3	4	9	1	0	0	0	0	1	0	0	0	1819	1116	39	1	244	1	C15orf58	15	90784382	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	152752	90784382	11747010	15155	23306											
TTLL13	440307	broad.mit.edu	37	chr15	90799095	90799095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtacaacatcttccccCgcacctggtgcctccccgca	7	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90799095	A	A	90799095	3	1	9	1	0	0	0	0	1	0	0	0	16852	652	23	1	540	1	TTLL13	15	90799095	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14713	90799095	11732297	15156	23307											
TTLL13	440307	broad.mit.edu	37	chr15	90799112	90799112	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcacctggtgcctcccCgcagagtgagtgggtctggc	14	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90799112	A	A	90799112	2	1	9	1	0	0	0	0	0	0	0	1	16852	639	23	1		1	TTLL13	15	90799112	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	90799112	11732280	15157	23308											
NGRN	51335	broad.mit.edu	37	chr15	90814528	90814528	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaagcaagtttttaccCacattggagcagaagctgaa	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90814528	A	A	90814528	2	1	9	1	0	0	0	0	0	0	0	1	10494	581	21	2		2	NGRN	15	90814528	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15416	90814528	11716864	15158	23309											
IQGAP1	8826	broad.mit.edu	37	chr15	91019907	91019907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttataggatgtggtttccCacagtaaaaaacttaccaaa	7	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91019907	A	A	91019907	3	1	9	1	0	0	0	0	1	0	0	0	7884	594	21	2	2891	2	IQGAP1	15	91019907	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	205379	91019907	11511485	15159	23310											
CRTC3	64784	broad.mit.edu	37	chr15	91083347	91083347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaaatgtgagccagctgcGgagcagtgcgtcagagtttc	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91083347	T	T	91083347	3	4	9	1	0	0	0	0	1	0	0	0	3933	1116	39	1	215	1	CRTC3	15	91083347	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63440	91083347	11448045	15160	23311											
CRTC3	64784	broad.mit.edu	37	chr15	91178109	91178109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtagtcactgttggatcGggttctaaaggtaaggctgg	14	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91178109	T	T	91178109	1	4	9	0	1	0	0	0	0	0	0	0	3933	1131	39	1		1	CRTC3	15	91178109	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	94762	91178109	11353283	15161	23312											
FURIN	5045	broad.mit.edu	37	chr15	91419491	91419491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctattgcagatcttcGgggactattaccacttctgg	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91419491	T	T	91419491	3	4	9	1	0	0	0	0	1	0	0	0	6159	1116	39	1	190	1	FURIN	15	91419491	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	241382	91419491	11111901	15162	23313											
FURIN	5045	broad.mit.edu	37	chr15	91419597	91419597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaagtgagtgtggcccCagccccctcctgctgccacc	10	19	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91419597	A	A	91419597	1	1	9	0	1	0	0	0	0	0	0	0	6159	609	21	2		2	FURIN	15	91419597	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	91419597	11111795	15163	23314											
FURIN	5045	broad.mit.edu	37	chr15	91420285	91420285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggagggaggccgtgatcCctgctgaggtgtgtctagag	19	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91420285	A	A	91420285	1	1	9	0	1	0	0	0	0	0	0	0	6159	638	22	2		2	FURIN	15	91420285	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	688	91420285	11111107	15164	23315											
FURIN	5045	broad.mit.edu	37	chr15	91424957	91424957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctctggctttagttttcGgggggtgaaggtgtacacca	15	8	1	1	rs35641241	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91424957	T	T	91424957	3	4	9	1	0	0	0	0	1	0	0	0	6159	1116	39	1	2292	1	FURIN	15	91424957	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4672	91424957	11106435	15165	23316											
FES	2242	broad.mit.edu	37	chr15	91435285	91435285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctgtctcctctcttcccCaggacaagtgggtgctgaac	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91435285	A	A	91435285	1	1	9	0	1	0	0	0	0	0	0	0	5877	609	21	2		2	FES	15	91435285	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10328	91435285	11096107	15166	23317											
MAN2A2	4122	broad.mit.edu	37	chr15	91447375	91447375	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttggtggaaagactgccacGggcattttgcatgttggagc	14	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91447375	C	C	91447375	1	2	9	0	1	0	0	0	0	0	0	0	9307	1131	39	4		4	MAN2A2	15	91447375	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12090	91447375	11084017	15167	23318											
UNC45A	55898	broad.mit.edu	37	chr15	91482981	91482981	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgatacatgtcctcgacGgatgccaaagtggaacagat	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91482981	T	T	91482981	2	4	9	1	0	0	0	0	0	0	0	1	17114	1103	39	1		1	UNC45A	15	91482981	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35606	91482981	11048411	15168	23319											
PRC1	9055	broad.mit.edu	37	chr15	91517927	91517927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgaatgttcctgttccCacaattcaattcgtgccttc	5	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91517927	A	A	91517927	3	1	9	1	0	0	0	0	1	0	0	0	12552	595	21	2	648	2	PRC1	15	91517927	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34946	91517927	11013465	15169	23320											
PRC1	9055	broad.mit.edu	37	chr15	91527305	91527305	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctctttctgacagacGgatatgcttttgatgagtct	9	8	4	4	rs139398740	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91527305	T	T	91527305	2	4	9	1	0	0	0	0	0	0	0	1	12552	1103	39	1		1	PRC1	15	91527305	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9378	91527305	11004087	15170	23321											
PRC1	9055	broad.mit.edu	37	chr15	91527863	91527863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttctgtatgctatctcGggtgagacaccaacatcctt	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91527863	T	T	91527863	1	4	9	0	1	0	0	0	0	0	0	0	12552	1131	39	1		1	PRC1	15	91527863	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	558	91527863	11003529	15171	23322											
PRC1	9055	broad.mit.edu	37	chr15	91527887	91527887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacaccaacatccttaccCtggtccaatgcagagaccag	8	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91527887	A	A	91527887	1	1	9	0	1	0	0	0	0	0	0	0	12552	696	24	2		2	PRC1	15	91527887	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	91527887	11003505	15172	23323											
VPS33B	26276	broad.mit.edu	37	chr15	91548939	91548939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacggagactcagcaggcGgtgctcctgtttcaggccct	12	14	2	1	rs140237411	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91548939	T	T	91548939	3	4	9	1	0	0	0	0	1	0	0	0	17329	1116	39	1	882	1	VPS33B	15	91548939	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21052	91548939	10982453	15173	23324											
SV2B	9899	broad.mit.edu	37	chr15	91827396	91827396	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcctgtctgtcttaccCgggaacatcatttctgccct	9	14	4	0	rs111640061		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91827396	A	A	91827396	2	1	9	1	0	0	0	0	0	0	0	1	15536	639	23	1		1	SV2B	15	91827396	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	278457	91827396	10703996	15174	23325											
SLCO3A1	28232	broad.mit.edu	37	chr15	92638149	92638149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtatttggaccagcctgcGggtttatcctgggctctttc	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92638149	T	T	92638149	3	4	9	1	0	0	0	0	1	0	0	0	14842	1116	39	1	695	1	SLCO3A1	15	92638149	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	810753	92638149	9893243	15175	23326											
SLCO3A1	28232	broad.mit.edu	37	chr15	92669306	92669306	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagggatgactgcgatccCgtgtgcttgtctgggtatct	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92669306	G	G	92669306	3	3	9	1	0	0	0	0	1	0	0	0	14842	652	23	4	1212	4	SLCO3A1	15	92669306	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31157	92669306	9862086	15176	23327											
SLCO3A1	28232	broad.mit.edu	37	chr15	92705994	92705994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggtaacaggcttcatcCctccacccctcatcttcggg	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92705994	A	A	92705994	3	1	9	1	0	0	0	0	1	0	0	0	14842	623	22	2	1800	2	SLCO3A1	15	92705994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36688	92705994	9825398	15177	23328											
ST8SIA2	8128	broad.mit.edu	37	chr15	92987897	92987897	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagtacaggagtatgccCgggatgtggggctcaagaca	14	11	1	1	rs146396658		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92987897	A	A	92987897	2	1	9	1	0	0	0	0	0	0	0	1	15350	643	23	1		1	ST8SIA2	15	92987897	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	281903	92987897	9543495	15178	23329											
CHD2	1106	broad.mit.edu	37	chr15	93496617	93496617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatccttgctgatgaaatGggcctaggaaagaccatcca	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93496617	T	T	93496617	3	4	9	1	0	0	0	0	1	0	0	0	3356	1348	47	2	1587	2	CHD2	15	93496617	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	508720	93496617	9034775	15179	23330											
CHD2	1106	broad.mit.edu	37	chr15	93499737	93499737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggagtggatgaagccCatcggttgaagaatgatgac	14	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93499737	A	A	93499737	3	1	9	1	0	0	0	0	1	0	0	0	3356	594	21	2	1920	2	CHD2	15	93499737	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3120	93499737	9031655	15180	23331											
CHD2	1106	broad.mit.edu	37	chr15	93521584	93521584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacttgcaggcacaagccCgagcgcatagaattggtcaa	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93521584	A	A	93521584	2	1	9	1	0	0	0	0	0	0	0	1	3356	644	23	1		1	CHD2	15	93521584	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21847	93521584	9009808	15181	23332											
CHD2	1106	broad.mit.edu	37	chr15	93541625	93541625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctatattttgggtggttGgggagggaaaggactgtgct	16	3	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93541625	T	T	93541625	1	4	9	0	1	0	0	0	0	0	0	0	3356	1363	47	2		2	CHD2	15	93541625	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20041	93541625	8989767	15182	23333											
MCTP2	55784	broad.mit.edu	37	chr15	94882554	94882554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaaatttaagctgaatGggaagacgctgtacaaaagt	11	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94882554	T	T	94882554	3	4	9	1	0	0	0	0	1	0	0	0	9494	1348	47	2	687	2	MCTP2	15	94882554	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1340929	94882554	7648838	15183	23334											
MCTP2	55784	broad.mit.edu	37	chr15	94899426	94899426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaccaactctggaacGggattataagtataactttg	8	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94899426	T	T	94899426	3	4	9	1	0	0	0	0	1	0	0	0	9494	1116	39	1	1096	1	MCTP2	15	94899426	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16872	94899426	7631966	15184	23335											
MCTP2	55784	broad.mit.edu	37	chr15	94928754	94928754	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgccattcccttgctgtcCgtaagtttcctttattaata	6	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94928754	A	A	94928754	2	1	9	1	0	0	0	0	0	0	0	1	9494	666	23	1		1	MCTP2	15	94928754	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	29328	94928754	7602638	15185	23336											
MCTP2	55784	broad.mit.edu	37	chr15	94943180	94943180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattaggacttttactcccCgggaaaagcgctttgttgaa	10	8	0	1	rs142688460		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94943180	A	A	94943180	2	1	9	1	0	0	0	0	0	0	0	1	9494	643	23	1		1	MCTP2	15	94943180	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14426	94943180	7588212	15186	23337											
MCTP2	55784	broad.mit.edu	37	chr15	94943227	94943227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaagctgtccaaaaaggtGggtcgctacagtaggtggct	14	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94943227	T	T	94943227	1	4	9	0	1	0	0	0	0	0	0	0	9494	1363	47	2		2	MCTP2	15	94943227	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47	94943227	7588165	15187	23338											
NR2F2	7026	broad.mit.edu	37	chr15	96877367	96877367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagttcgcgctgaccaacGgggatcccctcaactgccac	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96877367	T	T	96877367	3	4	9	1	0	0	0	0	1	0	0	0	10723	1116	39	1	558	1	NR2F2	15	96877367	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1934140	96877367	5654025	15188	23339											
NR2F2	7026	broad.mit.edu	37	chr15	96877564	96877564	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaacatccccttcttcccCgacctgcagatcacggacca	7	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96877564	A	A	96877564	2	1	9	1	0	0	0	0	0	0	0	1	10723	639	23	1		1	NR2F2	15	96877564	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	197	96877564	5653828	15189	23340											
SPATA8	145946	broad.mit.edu	37	chr15	97327331	97327331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggctctcactcaatgtGggctcctgatgctgagggga	14	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97327331	T	T	97327331	1	4	9	0	1	0	0	0	0	0	0	0	15131	1363	47	2		2	SPATA8	15	97327331	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	449767	97327331	5204061	15190	23341											
SPATA8	145946	broad.mit.edu	37	chr15	97328411	97328411	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggagttagctaacagccCagggaactggtctcttttcc	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97328411	A	A	97328411	1	1	9	0	1	0	0	0	0	0	0	0	15131	609	21	2		2	SPATA8	15	97328411	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1080	97328411	5202981	15191	23342											
IGF1R	3480	broad.mit.edu	37	chr15	99251220	99251220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtggggaataagccccCaaaggaatgtggggacctgt	14	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99251220	A	A	99251220	3	1	9	1	0	0	0	0	1	0	0	0	7641	594	21	2	530	2	IGF1R	15	99251220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1922809	99251220	3280172	15192	23343											
IGF1R	3480	broad.mit.edu	37	chr15	99454634	99454634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccggccccctgactacaGggatctcatcagcttcaccg	9	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99454634	T	T	99454634	3	4	9	1	0	0	0	0	1	0	0	0	7641	1000	35	2	1579	2	IGF1R	15	99454634	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	203414	99454634	3076758	15193	23344											
IGF1R	3480	broad.mit.edu	37	chr15	99459227	99459227	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggacgttctttcagcatcGaactcctcttctcagttaat	6	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99459227	T	T	99459227	2	4	9	1	0	0	0	0	0	0	0	1	7641	1045	37	3		3	IGF1R	15	99459227	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4593	99459227	3072165	15194	23345											
IGF1R	3480	broad.mit.edu	37	chr15	99467824	99467824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctaaaccggctaaaccCggggaactacacagcccgga	10	14	0	0	rs142608976		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99467824	A	A	99467824	3	1	9	1	0	0	0	0	1	0	0	0	7641	652	23	1	2743	1	IGF1R	15	99467824	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8597	99467824	3063568	15195	23346											
IGF1R	3480	broad.mit.edu	37	chr15	99467841	99467841	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccggggaactacacagccCggattcaggccacatctctc	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99467841	A	A	99467841	2	1	9	1	0	0	0	0	0	0	0	1	7641	643	23	1		1	IGF1R	15	99467841	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	99467841	3063551	15196	23347											
SYNM	23336	broad.mit.edu	37	chr15	99669600	99669600	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaatcctatcactatacCgactcactactacagaggga	5	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99669600	A	A	99669600	2	1	9	1	0	0	0	0	0	0	0	1	15574	639	23	1		1	SYNM	15	99669600	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	201759	99669600	2861792	15197	23348											
SYNM	23336	broad.mit.edu	37	chr15	99669681	99669681	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtttcaatcacagctcGgcactgtattctaacctgtc	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99669681	T	T	99669681	2	4	9	1	0	0	0	0	0	0	0	1	15574	1103	39	1		1	SYNM	15	99669681	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	81	99669681	2861711	15198	23349											
SYNM	23336	broad.mit.edu	37	chr15	99669723	99669723	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaccgtggatctcagacGggcacatctattggaggtga	15	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99669723	T	T	99669723	2	4	9	1	0	0	0	0	0	0	0	1	15574	1103	39	1		1	SYNM	15	99669723	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	42	99669723	2861669	15199	23350											
SYNM	23336	broad.mit.edu	37	chr15	99672798	99672798	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgactaggtcctacagaaacGgaaacctctgaacacattgc	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99672798	T	T	99672798	2	4	9	1	0	0	0	0	0	0	0	1	15574	1103	39	1		1	SYNM	15	99672798	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3075	99672798	2858594	15200	23351											
SYNM	23336	broad.mit.edu	37	chr15	99672847	99672847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccgtgtccagaacatttGtgcttgctggttcagcggac	12	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99672847	T	T	99672847	3	4	9	1	0	0	0	0	1	0	0	0	15574	1377	48	3	4295	3	SYNM	15	99672847	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49	99672847	2858545	15201	23352											
TTC23	64927	broad.mit.edu	37	chr15	99759176	99759176	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgaaaacatctgtattctCactatagggaggcacaatgg	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99759176	A	A	99759176	4	1	9	1	0	0	0	0	0	1	0	0	16816	835	29	3	993	3	TTC23	15	99759176	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86329	99759176	2772216	15202	23353											
LRRC28	123355	broad.mit.edu	37	chr15	99800099	99800099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcaaaggtggaagaaccCgacgaagaacctgaggagac	14	8	0	4	rs117540298	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99800099	A	A	99800099	1	1	9	0	1	0	0	0	0	0	0	0	9069	667	23	1		1	LRRC28	15	99800099	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	40923	99800099	2731293	15203	23354											
LRRC28	123355	broad.mit.edu	37	chr15	99901640	99901640	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgaaggccatagggacGgagcatgatcacgtcctccc	14	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99901640	T	T	99901640	2	4	9	1	0	0	0	0	0	0	0	1	9069	1103	39	1		1	LRRC28	15	99901640	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101541	99901640	2629752	15204	23355											
LRRC28	123355	broad.mit.edu	37	chr15	99926275	99926275	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcttactgctgctccaccCagtgtctgcagacttttgac	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99926275	G	G	99926275	3	3	9	1	0	0	0	0	1	0	0	0	9069	595	21	4	1106	4	LRRC28	15	99926275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24635	99926275	2605117	15205	23356											
LRRC28	123355	broad.mit.edu	37	chr15	99926301	99926301	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcagacttttgacctgctGagttgataaacactcaagaa	8	9	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99926301	T	T	99926301	2	4	9	1	0	0	0	0	0	0	0	1	9069	1277	45	3		3	LRRC28	15	99926301	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	99926301	2605091	15206	23357											
MEF2A	4205	broad.mit.edu	37	chr15	100214666	100214666	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagccccaatgctttgtcCtacactaacccagggagttc	7	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100214666	A	A	100214666	2	1	9	1	0	0	0	0	0	0	0	1	9548	668	24	2		2	MEF2A	15	100214666	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	288365	100214666	2316726	15207	23358											
LYSMD4	145748	broad.mit.edu	37	chr15	100269605	100269605	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatccataggcgtcttcGgaggtgccgggagcagtggc	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100269605	T	T	100269605	3	4	9	1	0	0	0	0	1	0	0	0	9215	1116	39	1	280	1	LYSMD4	15	100269605	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54939	100269605	2261787	15208	23359											
ADAMTS17	170691	broad.mit.edu	37	chr15	100591985	100591985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaaaaggaaggaaggccCgtgggaatgccgaatctgca	14	7	1	1	rs76198338	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100591985	A	A	100591985	1	1	9	0	1	0	0	0	0	0	0	0	262	667	23	1		1	ADAMTS17	15	100591985	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	322380	100591985	1939407	15209	23360											
LINS1	55180	broad.mit.edu	37	chr15	101114085	101114085	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaaagccagcatgtccacCgctacatgatggtctggcgg	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101114085	A	A	101114085	2	1	9	1	0	0	0	0	0	0	0	1	8891	639	23	1		1	LINS1	15	101114085	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	522100	101114085	1417307	15210	23361											
ALDH1A3	220	broad.mit.edu	37	chr15	101427779	101427779	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttctggtcgctcagccCgacgtggacaaggctgtgga	15	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101427779	A	A	101427779	2	1	9	1	0	0	0	0	0	0	0	1	492	639	23	1		1	ALDH1A3	15	101427779	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	313694	101427779	1103613	15211	23362											
ALDH1A3	220	broad.mit.edu	37	chr15	101447332	101447332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattaatcatagattttcGggccagtgcaaccaatactg	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101447332	T	T	101447332	3	4	9	1	0	0	0	0	1	0	0	0	492	1116	39	1	1282	1	ALDH1A3	15	101447332	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19553	101447332	1084060	15212	23363											
ALDH1A3	220	broad.mit.edu	37	chr15	101447397	101447397	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaagagcgaatagcacCgactatggactcacagcagc	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101447397	A	A	101447397	2	1	9	1	0	0	0	0	0	0	0	1	492	639	23	1		1	ALDH1A3	15	101447397	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	101447397	1083995	15213	23364											
LRRK1	79705	broad.mit.edu	37	chr15	101523752	101523752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccagcttctgagcatccCggcagcctatggggatctgg	15	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101523752	A	A	101523752	3	1	9	1	0	0	0	0	1	0	0	0	9119	652	23	1	291	1	LRRK1	15	101523752	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	76355	101523752	1007640	15214	23365											
LRRK1	79705	broad.mit.edu	37	chr15	101552405	101552405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttgagagaaaattgctcCgtgttgcagtgaaatgtatg	11	5	0	3	rs145437761	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101552405	A	A	101552405	1	1	9	0	1	0	0	0	0	0	0	0	9119	667	23	1		1	LRRK1	15	101552405	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28653	101552405	978987	15215	23366											
LRRK1	79705	broad.mit.edu	37	chr15	101562675	101562675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgatcatcgtgggtccccCgcgccagggcaagtccaccc	12	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101562675	A	A	101562675	3	1	9	1	0	0	0	0	1	0	0	0	9119	652	23	1	1994	1	LRRK1	15	101562675	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10270	101562675	968717	15216	23367											
LRRK1	79705	broad.mit.edu	37	chr15	101597173	101597173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtccaagggcatccgccCggttctggggcagccggagg	17	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101597173	A	A	101597173	3	1	9	1	0	0	0	0	1	0	0	0	9119	652	23	1	4551	1	LRRK1	15	101597173	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34498	101597173	934219	15217	23368											
LRRK1	79705	broad.mit.edu	37	chr15	101608906	101608906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgccgtggtggcaaaGgacactgttgtgtgcacctt	14	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101608906	T	T	101608906	3	4	9	1	0	0	0	0	1	0	0	0	9119	991	35	2	6031	2	LRRK1	15	101608906	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11733	101608906	922486	15218	23369											
CHSY1	22856	broad.mit.edu	37	chr15	101717991	101717991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcactgggaactttccCactataaacaatctttgggt	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101717991	A	A	101717991	3	1	9	1	0	0	0	0	1	0	0	0	3443	594	21	2	401	2	CHSY1	15	101717991	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109085	101717991	813401	15219	23370											
SNRPA1	6627	broad.mit.edu	37	chr15	101825829	101825829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtatgctaataactgtgGgaaaatgaaatctgcaatgt	10	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101825829	T	T	101825829	1	4	9	0	1	0	0	0	0	0	0	0	14974	1247	43	2		2	SNRPA1	15	101825829	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	107838	101825829	705563	15220	23371											
SNRPA1	6627	broad.mit.edu	37	chr15	101832173	101832173	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgcaacttaccagttcCacgagactattattggtgag	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101832173	A	A	101832173	2	1	9	1	0	0	0	0	0	0	0	1	14974	581	21	2		2	SNRPA1	15	101832173	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6344	101832173	699219	15221	23372											
PCSK6	5046	broad.mit.edu	37	chr15	101933522	101933522	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcggtggcgctgctgacGgagatggtgtagatgctgtt	16	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101933522	T	T	101933522	2	4	9	1	0	0	0	0	0	0	0	1	11698	1103	39	1		1	PCSK6	15	101933522	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	101349	101933522	597870	15222	23373											
TM2D3	80213	broad.mit.edu	37	chr15	102182630	102182630	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaccacatcaactcctacGgacaaaagggctttttctaa	5	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102182630	T	T	102182630	1	4	9	0	1	0	0	0	0	0	0	0	16088	1131	39	1		1	TM2D3	15	102182630	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	249108	102182630	348762	15223	23374											
TM2D3	80213	broad.mit.edu	37	chr15	102191934	102191934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactgtgaatgtgcgtgttGggcccggatcctttattgac	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102191934	T	T	102191934	3	4	9	1	0	0	0	0	1	0	0	0	16088	1348	47	2	629	2	TM2D3	15	102191934	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9304	102191934	339458	15224	23375											
TM2D3	80213	broad.mit.edu	37	chr15	102192017	102192017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagagaaacacgttatccCgggacaagaaaaccttattt	7	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102192017	A	A	102192017	1	1	9	0	1	0	0	0	0	0	0	0	16088	667	23	1		1	TM2D3	15	102192017	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	83	102192017	339375	15225	23376											
TARSL2	123283	broad.mit.edu	37	chr15	102194776	102194776	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacagaagcaaatatcagGgaaggacttcaaaaggcctc	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102194776	T	T	102194776	1	4	9	0	1	0	0	0	0	0	0	0	15680	1247	43	2		2	TARSL2	15	102194776	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	2759	102194776	336616	15226	23377											
TARSL2	123283	broad.mit.edu	37	chr15	102242447	102242447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgtggggcataccttccCgatcttcctgtgatctcggt	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102242447	A	A	102242447	3	1	9	1	0	0	0	0	1	0	0	0	15680	652	23	1	1236	1	TARSL2	15	102242447	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47671	102242447	288945	15227	23378											
TARSL2	123283	broad.mit.edu	37	chr15	102255116	102255116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgggcggtccaggtccCacagttcaccattgactttg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102255116	A	A	102255116	3	1	9	1	0	0	0	0	1	0	0	0	15680	595	21	2	1855	2	TARSL2	15	102255116	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12669	102255116	276276	15228	23379											
TARSL2	123283	broad.mit.edu	37	chr15	102264433	102264433	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggcccggagctgcgccaccTcccgcgtgaggcacggcccc	14	20	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102264433	A	A	102264433	3	1	9	1	0	0	0	0	1	0	0	0	15680	1551	54	5	2326	5	TARSL2	15	102264433	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	9317	102264433	266959	15229	23380											
OR4F6	390648	broad.mit.edu	37	chr15	102346135	102346135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctttccatcatcaatttGgtattttgttcctccacagc	4	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102346135	T	T	102346135	3	4	9	1	0	0	0	0	1	0	0	0	11160	1339	47	2	215	2	OR4F6	15	102346135	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81702	102346135	185257	15230	23381											
OR4F6	390648	broad.mit.edu	37	chr15	102346244	102346244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctttatccatgcagttGggggaactgagatggtgctg	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102346244	T	T	102346244	3	4	9	1	0	0	0	0	1	0	0	0	11160	1348	47	2	324	2	OR4F6	15	102346244	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109	102346244	185148	15231	23382											
OR4F6	390648	broad.mit.edu	37	chr15	102346507	102346507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatagagacctacacattGggattcatggttactgccaa	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102346507	T	T	102346507	3	4	9	1	0	0	0	0	1	0	0	0	11160	1339	47	2	587	2	OR4F6	15	102346507	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	263	102346507	184885	15232	23383											
OR4F6	390648	broad.mit.edu	37	chr15	102346588	102346588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcttacatctttattttGgtgactgttcagaaaaaatc	5	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102346588	T	T	102346588	3	4	9	1	0	0	0	0	1	0	0	0	11160	1339	47	2	668	2	OR4F6	15	102346588	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81	102346588	184804	15233	23384											
OR4F15	390649	broad.mit.edu	37	chr15	102358673	102358673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaaggccatctcctttcGgggatgtattactcagatct	9	11	3	1	rs144039449	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102358673	T	T	102358673	3	4	9	1	0	0	0	0	1	0	0	0	11155	1116	39	1	286	1	OR4F15	15	102358673	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12085	102358673	172719	15234	23385											
OR4F15	390649	broad.mit.edu	37	chr15	102358897	102358897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagatttacctttttgtGgtcctaatatctttgacagt	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102358897	T	T	102358897	3	4	9	1	0	0	0	0	1	0	0	0	11155	1348	47	2	510	2	OR4F15	15	102358897	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	224	102358897	172495	15235	23386											
ITFG3	83986	broad.mit.edu	37	chr16	304624	304624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgtctcattcgtcatccCgtgtccagaccggccggcgt	11	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	304624	A	A	304624	3	1	9	1	0	0	0	0	1	0	0	0	7941	652	23	1	214	1	ITFG3	16	304624	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08		304624	90050129	15236	23387											
NARFL	64428	broad.mit.edu	37	chr16	786224	786224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttactcagacgccccCttgatttggagcggcagtgt	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	786224	A	A	786224	1	1	9	0	1	0	0	0	0	0	0	0	10262	696	24	2		2	NARFL	16	786224	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	481600	786224	89568529	15237	23388											
MSLNL	401827	broad.mit.edu	37	chr16	830490	830490	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggctgtggatgcgtgcGggcacgcatgtgtaggtgac	18	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	830490	T	T	830490	3	4	9	1	0	0	0	0	1	0	0	0	9976	1116	39	1	2706	1	MSLNL	16	830490	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44266	830490	89524263	15238	23389											
MSLNL	401827	broad.mit.edu	37	chr16	831000	831000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtgacagctgtgtgcacGgggaggtgacagctgtgtgc	18	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	831000	T	T	831000	1	4	9	0	1	0	0	0	0	0	0	0	9976	1131	39	1		1	MSLNL	16	831000	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	510	831000	89523753	15239	23390											
UBE2I	7329	broad.mit.edu	37	chr16	1370412	1370412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttcaaactgctcacaccCgtcttgtgtttttgtctctg	6	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1370412	A	A	1370412	1	1	9	0	1	0	0	0	0	0	0	0	16985	667	23	1		1	UBE2I	16	1370412	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	539412	1370412	88984341	15240	23391											
IFT140	9742	broad.mit.edu	37	chr16	1604737	1604737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggggaaggagtggaaccCgccttcctctcagacaaggc	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1604737	A	A	1604737	1	1	9	0	1	0	0	0	0	0	0	0	7626	667	23	1		1	IFT140	16	1604737	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	234325	1604737	88750016	15241	23392											
IFT140	9742	broad.mit.edu	37	chr16	1607925	1607925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaacatcccagtggtcGggatcctcaccttttgatga	8	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1607925	T	T	1607925	1	4	9	0	1	0	0	0	0	0	0	0	7626	1131	39	1		1	IFT140	16	1607925	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3188	1607925	88746828	15242	23393											
CRAMP1L	57585	broad.mit.edu	37	chr16	1712578	1712578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggcctttttgctgtccCgacaaccttgccacccaaca	8	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1712578	A	A	1712578	3	1	9	1	0	0	0	0	1	0	0	0	3878	652	23	1	2543	1	CRAMP1L	16	1712578	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104653	1712578	88642175	15243	23394											
NOXO1	124056	broad.mit.edu	37	chr16	2030385	2030385	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgccgggtggcagcgcGggctccaggtccaggggttg	18	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2030385	T	T	2030385	2	4	9	1	0	0	0	0	0	0	0	1	10656	1103	39	1		1	NOXO1	16	2030385	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	317807	2030385	88324368	15244	23395											
TSC2	7249	broad.mit.edu	37	chr16	2105443	2105443	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggatgttggcttgtcctcGgaattccttctggtgctggt	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2105443	T	T	2105443	2	4	9	1	0	0	0	0	0	0	0	1	16731	1103	39	1		1	TSC2	16	2105443	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	75058	2105443	88249310	15245	23396											
TSC2	7249	broad.mit.edu	37	chr16	2129135	2129135	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctccacctggagctcacGgaaacctgtctggacatgat	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2129135	T	T	2129135	2	4	9	1	0	0	0	0	0	0	0	1	16731	1103	39	1		1	TSC2	16	2129135	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23692	2129135	88225618	15246	23397											
ABCA3	21	broad.mit.edu	37	chr16	2373673	2373673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccgtgtgtaactgaacCgtaggtgatatttcacctgt	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2373673	A	A	2373673	3	1	9	1	0	0	0	0	1	0	0	0	33	652	23	1	4758	1	ABCA3	16	2373673	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	244538	2373673	87981080	15247	23398											
CCNF	899	broad.mit.edu	37	chr16	2498851	2498851	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagaccccttctcggcgtTgcaggtttatcagtaaagag	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2498851	G	G	2498851	1	3	9	0	1	0	0	0	0	0	0	0	2952	1827	63	5		5	CCNF	16	2498851	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	125178	2498851	87855902	15248	23399											
SRRM2	23524	broad.mit.edu	37	chr16	2816008	2816008	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactcaaggtcacctgccCggcaggaaagttcccggacc	10	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2816008	A	A	2816008	2	1	9	1	0	0	0	0	0	0	0	1	15287	643	23	1		1	SRRM2	16	2816008	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	317157	2816008	87538745	15249	23400											
PRSS21	10942	broad.mit.edu	37	chr16	2870949	2870949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccttcccactatcgtcCgcacagcactgccatctccc	4	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2870949	A	A	2870949	1	1	9	0	1	0	0	0	0	0	0	0	12724	667	23	1		1	PRSS21	16	2870949	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	54941	2870949	87483804	15250	23401											
MEFV	4210	broad.mit.edu	37	chr16	3293589	3293589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagctgtcaaatctttgcGggccatcaggcagcctctcc	9	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3293589	T	T	3293589	3	4	9	1	0	0	0	0	1	0	0	0	9552	1116	39	1	451	1	MEFV	16	3293589	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	422640	3293589	87061164	15251	23402											
BTBD12	84464	broad.mit.edu	37	chr16	3639005	3639005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctcctggctactcactgGgtgtctctaacccttcgggc	10	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3639005	T	T	3639005	3	4	9	1	0	0	0	0	1	0	0	0	1549	1232	43	2	886	2	BTBD12	16	3639005	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	345416	3639005	86715748	15252	23403											
BTBD12	84464	broad.mit.edu	37	chr16	3639204	3639204	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtagtgcagcttcctcGgatgggggtggtgtccagga	18	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3639204	T	T	3639204	2	4	9	1	0	0	0	0	0	0	0	1	1549	1124	39	1		1	BTBD12	16	3639204	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	199	3639204	86715549	15253	23404											
CREBBP	1387	broad.mit.edu	37	chr16	3860568	3860568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaccacagcacccaccGgagagccataacactgaggg	10	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3860568	T	T	3860568	1	4	9	0	1	0	0	0	0	0	0	0	3893	1131	39	1		1	CREBBP	16	3860568	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	221364	3860568	86494185	15254	23405											
TFAP4	7023	broad.mit.edu	37	chr16	4312594	4312594	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgagggactggaatccCgcgttgatgctctgcatgcg	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4312594	A	A	4312594	2	1	9	1	0	0	0	0	0	0	0	1	15915	639	23	1		1	TFAP4	16	4312594	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	452026	4312594	86042159	15255	23406											
NMRAL1	57407	broad.mit.edu	37	chr16	4519515	4519515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagacctacctgaaagtccCactgaagggcgaaaccccga	9	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4519515	A	A	4519515	1	1	9	0	1	0	0	0	0	0	0	0	10596	609	21	2		2	NMRAL1	16	4519515	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	206921	4519515	85835238	15256	23407											
MGRN1	23295	broad.mit.edu	37	chr16	4700385	4700385	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaactactttgcttcgcaCtttttcatgggaggagagaa	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4700385	G	G	4700385	3	3	9	1	0	0	0	0	1	0	0	0	9652	564	20	4	114	4	MGRN1	16	4700385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	180870	4700385	85654368	15257	23408											
NUDT16L1	84309	broad.mit.edu	37	chr16	4743997	4743997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcagatgcgtttcgacGggctgctgggcttccccggg	16	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4743997	T	T	4743997	3	4	9	1	0	0	0	0	1	0	0	0	10828	1116	39	1	178	1	NUDT16L1	16	4743997	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43612	4743997	85610756	15258	23409											
C16orf71	146562	broad.mit.edu	37	chr16	4797310	4797310	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaggggcggcccccacGgggttgagtgaatttggtct	18	9	1	2	rs137881346	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4797310	T	T	4797310	1	4	9	0	1	0	0	0	0	0	0	0	1844	1131	39	1		1	C16orf71	16	4797310	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53313	4797310	85557443	15259	23410											
GLYR1	84656	broad.mit.edu	37	chr16	4873894	4873894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcacggtactagactcCgggatggtgagatcctatag	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4873894	A	A	4873894	2	1	9	1	0	0	0	0	0	0	0	1	6547	639	23	1		1	GLYR1	16	4873894	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76584	4873894	85480859	15260	23411											
UBN1	29855	broad.mit.edu	37	chr16	4909017	4909017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgacagtttgtttccCatcttcagtatgatgagctt	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4909017	A	A	4909017	1	1	9	0	1	0	0	0	0	0	0	0	17018	609	21	2		2	UBN1	16	4909017	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35123	4909017	85445736	15261	23412											
PPL	5493	broad.mit.edu	37	chr16	4950853	4950853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtttctggtacttggccCggagttcgctgttctgctcc	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4950853	A	A	4950853	3	1	9	1	0	0	0	0	1	0	0	0	12435	652	23	1	4754	1	PPL	16	4950853	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41836	4950853	85403900	15262	23413											
C16orf89	146556	broad.mit.edu	37	chr16	5106075	5106075	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttccatgaagatgtcccGggtagggtaggcgtatccga	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5106075	T	T	5106075	2	4	9	1	0	0	0	0	0	0	0	1	1856	1115	39	1		1	C16orf89	16	5106075	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	155222	5106075	85248678	15263	23414											
A2BP1	54715	broad.mit.edu	37	chr16	7568056	7568056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacccctagaaagtacgcGgggcacgatcgtcctgggat	14	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7568056	T	T	7568056	1	4	9	0	1	0	0	0	0	0	0	0	3	1131	39	1		1	A2BP1	16	7568056	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2461981	7568056	82786697	15264	23415											
A2BP1	54715	broad.mit.edu	37	chr16	7721613	7721613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgcaggtatgaaatccCgactggtggagaaactcatc	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7721613	A	A	7721613	1	1	9	0	1	0	0	0	0	0	0	0	3	667	23	1		1	A2BP1	16	7721613	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	153557	7721613	82633140	15265	23416											
ABAT	18	broad.mit.edu	37	chr16	8858680	8858680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaagaccatcttcatgtGgtaccgggtgaggtttgggg	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8858680	T	T	8858680	3	4	9	1	0	0	0	0	1	0	0	0	27	1357	47	2	559	2	ABAT	16	8858680	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1137067	8858680	81496073	15266	23417											
USP7	7874	broad.mit.edu	37	chr16	8992341	8992341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataccgtcaccaaaacccCgagccttctctttatgaccc	5	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8992341	A	A	8992341	1	1	9	0	1	0	0	0	0	0	0	0	17215	667	23	1		1	USP7	16	8992341	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	133661	8992341	81362412	15267	23418											
USP7	7874	broad.mit.edu	37	chr16	9014236	9014236	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaactccatggggagcatcCgcctgtacaaagacttcaaa	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9014236	A	A	9014236	2	1	9	1	0	0	0	0	0	0	0	1	17215	639	23	1		1	USP7	16	9014236	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21895	9014236	81340517	15268	23419											
GRIN2A	2903	broad.mit.edu	37	chr16	9858737	9858737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatgttgctctgggatccCgtcagattgaagtctggaga	12	8	3	3	rs113847665	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9858737	A	A	9858737	2	1	9	1	0	0	0	0	0	0	0	1	6845	639	23	1		1	GRIN2A	16	9858737	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	844501	9858737	80496016	15269	23420											
GRIN2A	2903	broad.mit.edu	37	chr16	9927957	9927957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgctcatgaaggtaccCttacctttccctttggctaa	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9927957	A	A	9927957	1	1	9	0	1	0	0	0	0	0	0	0	6845	696	24	2		2	GRIN2A	16	9927957	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	69220	9927957	80426796	15270	23421											
TEKT5	146279	broad.mit.edu	37	chr16	10769852	10769852	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcttattcttcacatcCgtcacctcagagatgcgggc	9	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10769852	A	A	10769852	2	1	9	1	0	0	0	0	0	0	0	1	15878	639	23	1		1	TEKT5	16	10769852	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	841895	10769852	79584901	15271	23422											
TEKT5	146279	broad.mit.edu	37	chr16	10775828	10775828	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggacacgccagggatggGgagggggagtctgatactta	18	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10775828	C	C	10775828	1	2	9	0	1	0	0	0	0	0	0	0	15878	1247	43	4		4	TEKT5	16	10775828	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5976	10775828	79578925	15272	23423											
NUBP1	4682	broad.mit.edu	37	chr16	10851750	10851750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgatcaagcagttcctcCgagatgtggactggggagag	15	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10851750	A	A	10851750	2	1	9	1	0	0	0	0	0	0	0	1	10810	644	23	1		1	NUBP1	16	10851750	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75922	10851750	79503003	15273	23424											
CIITA	4261	broad.mit.edu	37	chr16	11002979	11002979	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagaggagaagttcaccatCgagcctttcaaagccaagtc	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11002979	T	T	11002979	2	4	9	1	0	0	0	0	0	0	0	1	3459	874	31	4		4	CIITA	16	11002979	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	151229	11002979	79351774	15274	23425											
CIITA	4261	broad.mit.edu	37	chr16	11012339	11012339	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacctgggtgcctacaaactCgccgaggccctgccttcgct	11	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11012339	A	A	11012339	2	1	9	1	0	0	0	0	0	0	0	1	3459	871	31	3		3	CIITA	16	11012339	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9360	11012339	79342414	15275	23426											
ZC3H7A	29066	broad.mit.edu	37	chr16	11873164	11873164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgttccaatcatgttccCgataaacgtcatttccttca	5	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11873164	A	A	11873164	3	1	9	1	0	0	0	0	1	0	0	0	17698	652	23	1	2831	1	ZC3H7A	16	11873164	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	860825	11873164	78481589	15276	23427											
RSL1D1	26156	broad.mit.edu	37	chr16	11931843	11931843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttctctgggcttttcCctggggtctcagactctgca	10	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11931843	A	A	11931843	3	1	9	1	0	0	0	0	1	0	0	0	13811	623	22	2	202	2	RSL1D1	16	11931843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58679	11931843	78422910	15277	23428											
PLA2G10	8399	broad.mit.edu	37	chr16	14766538	14766538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaagttgtactcagtttGggctaagcagttagcaatct	9	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14766538	T	T	14766538	3	4	9	1	0	0	0	0	1	0	0	0	12084	1357	47	2	77	2	PLA2G10	16	14766538	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2834695	14766538	75588215	15278	23429											
NOMO1	23420	broad.mit.edu	37	chr16	14970239	14970239	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgcccagggaagctgatcGagatccatgggaaggcaggc	16	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14970239	T	T	14970239	4	4	9	1	0	0	0	0	0	1	0	0	10626	1059	37	3	2462	3	NOMO1	16	14970239	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	203701	14970239	75384514	15279	23430											
NOMO1	23420	broad.mit.edu	37	chr16	14970627	14970627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacttcaaggcctatgccCtggcaggcgtaagctttgag	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14970627	A	A	14970627	3	1	9	1	0	0	0	0	1	0	0	0	10626	680	24	2	2709	2	NOMO1	16	14970627	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	388	14970627	75384126	15280	23431											
NPIP	9284	broad.mit.edu	37	chr16	15029264	15029264	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctaagaggtgggttccCtagagaaacctcgagccctg	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15029264	A	A	15029264	1	1	9	0	1	0	0	0	0	0	0	0	10679	696	24	2		2	NPIP	16	15029264	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	58637	15029264	75325489	15281	23432											
NTAN1	123803	broad.mit.edu	37	chr16	15141761	15141761	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtggcatcatcagaaccCagaatggagatggagcctgt	13	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15141761	A	A	15141761	2	1	9	1	0	0	0	0	0	0	0	1	10790	581	21	2		2	NTAN1	16	15141761	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	112497	15141761	75212992	15282	23433											
C16orf45	89927	broad.mit.edu	37	chr16	15609264	15609264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggaagtcttggtccgccGggagtctgagctcaggttca	15	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15609264	T	T	15609264	3	4	9	1	0	0	0	0	1	0	0	0	1828	1116	39	1	274	1	C16orf45	16	15609264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	467503	15609264	74745489	15283	23434											
KIAA0430	9665	broad.mit.edu	37	chr16	15729974	15729974	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaagctactggtacctcCgctaccgccaccaccaccac	5	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15729974	A	A	15729974	4	1	9	1	0	0	0	0	0	1	0	0	8247	661	23	1	4961	1	KIAA0430	16	15729974	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120710	15729974	74624779	15284	23435											
MYH11	4629	broad.mit.edu	37	chr16	15808794	15808794	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcttgagtgcgttcacctCgcggcccatggcctcgttgc	12	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15808794	A	A	15808794	4	1	9	1	0	0	0	0	0	1	0	0	10125	893	31	3	203	3	MYH11	16	15808794	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78820	15808794	74545959	15285	23436											
MYH11	4629	broad.mit.edu	37	chr16	15872668	15872668	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctcccacgatgtaaccCgtgacgtcgaagttgatgcg	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15872668	A	A	15872668	2	1	9	1	0	0	0	0	0	0	0	1	10125	639	23	1		1	MYH11	16	15872668	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63874	15872668	74482085	15286	23437											
MYH11	4629	broad.mit.edu	37	chr16	15917210	15917210	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatgtcgacgatcttctccGagtagatgggcaggtgttta	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15917210	T	T	15917210	4	4	9	1	0	0	0	0	0	1	0	0	10125	1059	37	3	5730	3	MYH11	16	15917210	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44542	15917210	74437543	15287	23438											
C16orf63	123811	broad.mit.edu	37	chr16	15967386	15967386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggttgtctgccaagacttGggtctgaaggctgaagtgaa	14	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15967386	T	T	15967386	3	4	9	1	0	0	0	0	1	0	0	0	1840	1348	47	2	122	2	C16orf63	16	15967386	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50176	15967386	74387367	15288	23439											
C16orf63	123811	broad.mit.edu	37	chr16	15977964	15977964	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgagacaatgatggtcGgggttcacggtcatcatcta	11	8	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15977964	T	T	15977964	2	4	9	1	0	0	0	0	0	0	0	1	1840	1124	39	1		1	C16orf63	16	15977964	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10578	15977964	74376789	15289	23440											
ABCC6	368	broad.mit.edu	37	chr16	16256868	16256868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtcagccaccagtcgcGggaaactgatcctctggctt	10	14	2	1	rs142128765		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16256868	T	T	16256868	3	4	9	1	0	0	0	0	1	0	0	0	57	1116	39	1	1055	1	ABCC6	16	16256868	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	278904	16256868	74097885	15290	23441											
ABCC6	368	broad.mit.edu	37	chr16	16272672	16272672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgttccctggagtagtcCaccaggcccaatgacctggt	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16272672	A	A	16272672	3	1	9	1	0	0	0	0	1	0	0	0	57	603	21	2	2169	2	ABCC6	16	16272672	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15804	16272672	74082081	15291	23442											
SMG1	23049	broad.mit.edu	37	chr16	18823223	18823223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacatacgtaagtcaaacCgtcattttatataaaaattt	3	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18823223	A	A	18823223	1	1	9	0	1	0	0	0	0	0	0	0	14909	667	23	1		1	SMG1	16	18823223	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2550551	18823223	71531530	15292	23443											
TMC5	79838	broad.mit.edu	37	chr16	19451843	19451843	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttggctccttagaaccGgactaccctggagctcagag	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19451843	T	T	19451843	2	4	9	1	0	0	0	0	0	0	0	1	16111	1103	39	1		1	TMC5	16	19451843	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	628620	19451843	70902910	15293	23444											
TMC5	79838	broad.mit.edu	37	chr16	19509278	19509278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagttcaagaaggtaatcCaagggcctgatgactctttt	9	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19509278	A	A	19509278	3	1	9	1	0	0	0	0	1	0	0	0	16111	594	21	2	3403	2	TMC5	16	19509278	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57435	19509278	70845475	15294	23445											
CP110	9738	broad.mit.edu	37	chr16	19562517	19562517	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttttgctctatttttaGgagtatatgcaggaaaaatc	9	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19562517	T	T	19562517	5	4	9	1	0	0	0	0	0	0	1	0	3820	1014	35	2	2950	2	CP110	16	19562517	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	53239	19562517	70792236	15295	23446											
C16orf62	57020	broad.mit.edu	37	chr16	19653744	19653744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagagcccaccaaggaccCggtcatcttgaatgcccttt	8	14	2	2	rs151122062	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19653744	A	A	19653744	3	1	9	1	0	0	0	0	1	0	0	0	1839	652	23	1	1897	1	C16orf62	16	19653744	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	91227	19653744	70701009	15296	23447											
C16orf62	57020	broad.mit.edu	37	chr16	19693640	19693640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacagcgatgagaaaatcCgcatctacacctgcgtcctg	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19693640	A	A	19693640	3	1	9	1	0	0	0	0	1	0	0	0	1839	652	23	1	2565	1	C16orf62	16	19693640	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39896	19693640	70661113	15297	23448											
GP2	2813	broad.mit.edu	37	chr16	20329730	20329730	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacaatgaactctccattccCgtccacactgacgttcaggg	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20329730	G	G	20329730	3	3	9	1	0	0	0	0	1	0	0	0	6647	652	23	4	594	4	GP2	16	20329730	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	636090	20329730	70025023	15298	23449											
PDILT	204474	broad.mit.edu	37	chr16	20372022	20372022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatgggatcctcttccCgcagagatgctcgaggattg	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20372022	A	A	20372022	1	1	9	0	1	0	0	0	0	0	0	0	11768	667	23	1		1	PDILT	16	20372022	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42292	20372022	69982731	15299	23450											
ACSM5	54988	broad.mit.edu	37	chr16	20429419	20429419	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcctgccttctggtgggtCaatggcacaggagcagagat	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20429419	G	G	20429419	2	3	9	1	0	0	0	0	0	0	0	1	187	813	29	4		4	ACSM5	16	20429419	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57397	20429419	69925334	15300	23451											
ACSM2A	123876	broad.mit.edu	37	chr16	20491903	20491903	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtcaccaggacaatccCgacaagacagcagccaacat	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20491903	A	A	20491903	2	1	9	1	0	0	0	0	0	0	0	1	183	639	23	1		1	ACSM2A	16	20491903	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62484	20491903	69862850	15301	23452											
ACSM2B	348158	broad.mit.edu	37	chr16	20551983	20551983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaggccttacctttcttGggtacttgtatggggctgtc	11	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20551983	T	T	20551983	3	4	9	1	0	0	0	0	1	0	0	0	184	1348	47	2	119	2	ACSM2B	16	20551983	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60080	20551983	69802770	15302	23453											
ACSM2B	348158	broad.mit.edu	37	chr16	20554553	20554553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaggagccaaaagtctcctCgaatgttggctgctgtcttg	11	10	2	0	rs144815187	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20554553	A	A	20554553	3	1	9	1	0	0	0	0	1	0	0	0	184	884	31	3	436	3	ACSM2B	16	20554553	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2570	20554553	69800200	15303	23454											
ACSM2B	348158	broad.mit.edu	37	chr16	20563423	20563423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaagtgtgcaaacctcGggctcactctgaataactgc	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20563423	T	T	20563423	1	4	9	0	1	0	0	0	0	0	0	0	184	1131	39	1		1	ACSM2B	16	20563423	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8870	20563423	69791330	15304	23455											
ACSM1	116285	broad.mit.edu	37	chr16	20634845	20634845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttttccgaagttccttcCgttcaatcttgccagtgatg	7	12	2	1	rs149435984	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20634845	A	A	20634845	3	1	9	1	0	0	0	0	1	0	0	0	182	652	23	1	40	1	ACSM1	16	20634845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71422	20634845	69719908	15305	23456											
ACSM3	6296	broad.mit.edu	37	chr16	20803376	20803376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaatttctatatcactgGggacagaggatatatggata	11	5	2	1	rs140665877	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20803376	T	T	20803376	3	4	9	1	0	0	0	0	1	0	0	0	185	1232	43	2	1510	2	ACSM3	16	20803376	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	168531	20803376	69551377	15306	23457											
ACSM3	6296	broad.mit.edu	37	chr16	20807792	20807792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaaaaaaactacagcacCttacaaatatcccagaaagg	5	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20807792	A	A	20807792	3	1	9	1	0	0	0	0	1	0	0	0	185	681	24	2	1794	2	ACSM3	16	20807792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4416	20807792	69546961	15307	23458											
DCUN1D3	123879	broad.mit.edu	37	chr16	20873698	20873698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctcggccttcttggtccCgttgacgaggatatctccac	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20873698	A	A	20873698	3	1	9	1	0	0	0	0	1	0	0	0	4348	652	23	1	759	1	DCUN1D3	16	20873698	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65906	20873698	69481055	15308	23459											
DNAH3	55567	broad.mit.edu	37	chr16	20976497	20976497	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctcagtcgctcccgtttGggagccaccaccttggccac	9	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20976497	T	T	20976497	2	4	9	1	0	0	0	0	0	0	0	1	4643	1335	47	2		2	DNAH3	16	20976497	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	102799	20976497	69378256	15309	23460											
DNAH3	55567	broad.mit.edu	37	chr16	20976606	20976606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagctggctggaattccGggtgattgataaacctttcc	11	9	0	3	rs147804108	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20976606	T	T	20976606	3	4	9	1	0	0	0	0	1	0	0	0	4643	1116	39	1	3789	1	DNAH3	16	20976606	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109	20976606	69378147	15310	23461											
DNAH3	55567	broad.mit.edu	37	chr16	21071678	21071678	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacttttccaccatgccCtatggagcaagacagagaga	9	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21071678	A	A	21071678	5	1	9	1	0	0	0	0	0	0	1	0	4643	695	24	2	8777	2	DNAH3	16	21071678	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	95072	21071678	69283075	15311	23462											
DNAH3	55567	broad.mit.edu	37	chr16	21098145	21098145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgggctgcgctgcttgGgggcgggcagtgattgatag	20	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21098145	T	T	21098145	1	4	9	0	1	0	0	0	0	0	0	0	4643	1247	43	2		2	DNAH3	16	21098145	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26467	21098145	69256608	15312	23463											
DNAH3	55567	broad.mit.edu	37	chr16	21098184	21098184	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacctgctgccagtgtcGgtctttcattcctgggttgc	11	11	2	1	rs143179083		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21098184	T	T	21098184	2	4	9	1	0	0	0	0	0	0	0	1	4643	1124	39	1		1	DNAH3	16	21098184	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39	21098184	69256569	15313	23464											
DNAH3	55567	broad.mit.edu	37	chr16	21098347	21098347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatattccctatctcctcCgcaatttgctcagcattcag	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21098347	A	A	21098347	2	1	9	1	0	0	0	0	0	0	0	1	4643	639	23	1		1	DNAH3	16	21098347	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	163	21098347	69256406	15314	23465											
ZP2	7783	broad.mit.edu	37	chr16	21209132	21209132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcactcctactcttctcccCactgctcccacttgctttta	2	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21209132	A	A	21209132	3	1	9	1	0	0	0	0	1	0	0	0	18345	594	21	2	195	2	ZP2	16	21209132	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	110785	21209132	69145621	15315	23466											
ANKS4B	257629	broad.mit.edu	37	chr16	21245068	21245068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcaggaaaaatgtctactCgttaccaccaagctgctagt	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21245068	A	A	21245068	3	1	9	1	0	0	0	0	1	0	0	0	691	884	31	3	12	3	ANKS4B	16	21245068	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35936	21245068	69109685	15316	23467											
ANKS4B	257629	broad.mit.edu	37	chr16	21262183	21262183	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggggtgatgctgtggccCgctggcagcactccaggcgg	17	11	0	1	rs151182255	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21262183	A	A	21262183	1	1	9	0	1	0	0	0	0	0	0	0	691	667	23	1		1	ANKS4B	16	21262183	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	17115	21262183	69092570	15317	23468											
METTL9	51108	broad.mit.edu	37	chr16	21629323	21629323	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcacaaaaatcatgagccCtcattttgaagaaatctatg	6	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21629323	A	A	21629323	3	1	9	1	0	0	0	0	1	0	0	0	9601	681	24	2	504	2	METTL9	16	21629323	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	367140	21629323	68725430	15318	23469											
OTOA	146183	broad.mit.edu	37	chr16	21689963	21689963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcaccctttgtggtttcCacacagtttagggaatgagg	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21689963	A	A	21689963	1	1	9	0	1	0	0	0	0	0	0	0	11396	609	21	2		2	OTOA	16	21689963	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60640	21689963	68664790	15319	23470											
UQCRC2	7385	broad.mit.edu	37	chr16	21969889	21969889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatctttcaagataaccCgtggaattgaagcagttggt	9	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21969889	A	A	21969889	3	1	9	1	0	0	0	0	1	0	0	0	17146	652	23	1	315	1	UQCRC2	16	21969889	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	279926	21969889	68384864	15320	23471											
UQCRC2	7385	broad.mit.edu	37	chr16	21994473	21994473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaatttgggacatacacCttttgttgatgagttgtaat	10	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21994473	A	A	21994473	3	1	9	1	0	0	0	0	1	0	0	0	17146	681	24	2	1397	2	UQCRC2	16	21994473	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24584	21994473	68360280	15321	23472											
POLR3E	55718	broad.mit.edu	37	chr16	22320706	22320706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccacaggccctggctcGgagctgccttcccctgtgac	13	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22320706	T	T	22320706	1	4	9	0	1	0	0	0	0	0	0	0	12327	1131	39	1		1	POLR3E	16	22320706	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	326233	22320706	68034047	15322	23473											
POLR3E	55718	broad.mit.edu	37	chr16	22320804	22320804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccaccagtaacacatccCgttatgccgctgcactctac	6	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22320804	A	A	22320804	3	1	9	1	0	0	0	0	1	0	0	0	12327	652	23	1	355	1	POLR3E	16	22320804	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98	22320804	68033949	15323	23474											
CDR2	1039	broad.mit.edu	37	chr16	22360669	22360669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctggtcacactttcccGggctccttctcccttggcca	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22360669	T	T	22360669	3	4	9	1	0	0	0	0	1	0	0	0	3202	1116	39	1	935	1	CDR2	16	22360669	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39865	22360669	67994084	15324	23475											
PALB2	79728	broad.mit.edu	37	chr16	23647098	23647098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaggtgctgactactacCgctatctgatagagtctgta	9	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23647098	A	A	23647098	3	1	9	1	0	0	0	0	1	0	0	0	11500	652	23	1	2831	1	PALB2	16	23647098	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1286429	23647098	66707655	15325	23476											
ERN2	10595	broad.mit.edu	37	chr16	23703247	23703247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccaggacccaaacttaGgacttttgggggccattccc	10	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23703247	T	T	23703247	1	4	9	0	1	0	0	0	0	0	0	0	5280	1015	35	2		2	ERN2	16	23703247	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	56149	23703247	66651506	15326	23477											
ERN2	10595	broad.mit.edu	37	chr16	23703500	23703500	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgccctgcccagggctccCtcaccgtggacctcttcctc	8	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23703500	G	G	23703500	1	3	9	0	1	0	0	0	0	0	0	0	5280	696	24	4		4	ERN2	16	23703500	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	253	23703500	66651253	15327	23478											
PRKCB	5579	broad.mit.edu	37	chr16	24196864	24196864	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcccaagtctatgtccaaGgaagctgtggccatctgcaa	9	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24196864	A	A	24196864	2	1	9	1	0	0	0	0	0	0	0	1	12614	991	35	4		4	PRKCB	16	24196864	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	493364	24196864	66157889	15328	23479											
PRKCB	5579	broad.mit.edu	37	chr16	24226155	24226155	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtagatgtgtagatctcCgtccttcatttctgtcattc	7	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24226155	A	A	24226155	1	1	9	0	1	0	0	0	0	0	0	0	12614	667	23	1		1	PRKCB	16	24226155	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29291	24226155	66128598	15329	23480											
SLC5A11	115584	broad.mit.edu	37	chr16	24922762	24922762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagccatcatagtttccCtggaagaaaaccccttggtg	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922762	A	A	24922762	3	1	9	1	0	0	0	0	1	0	0	0	14777	680	24	2	1994	2	SLC5A11	16	24922762	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	696607	24922762	65431991	15330	23481											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25255471	25255471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccggaggaagccgcactctCgaagctgttcagctacagcc	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25255471	A	A	25255471	3	1	9	1	0	0	0	0	1	0	0	0	17813	884	31	3	1295	3	ZKSCAN2	16	25255471	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	332709	25255471	65099282	15331	23482											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25264267	25264267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagacaattacaatgtacCtgggacccagcaggaagccg	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25264267	A	A	25264267	3	1	9	1	0	0	0	0	1	0	0	0	17813	695	24	2	2245	2	ZKSCAN2	16	25264267	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8796	25264267	65090486	15332	23483											
NSMCE1	197370	broad.mit.edu	37	chr16	27238205	27238205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagccaggccctctcccCattcaccacctctcttccct	3	23	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27238205	A	A	27238205	1	1	9	0	1	0	0	0	0	0	0	0	10770	609	21	2		2	NSMCE1	16	27238205	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1973938	27238205	63116548	15333	23484											
IL4R	3566	broad.mit.edu	37	chr16	27357825	27357825	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacctgacagttcacacCaatgtctccgacactctgct	7	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27357825	A	A	27357825	2	1	9	1	0	0	0	0	0	0	0	1	7768	581	21	2		2	IL4R	16	27357825	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	119620	27357825	62996928	15334	23485											
GTF3C1	2975	broad.mit.edu	37	chr16	27509935	27509935	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctatgggttcttcccGggcacctccacttgcctgtt	9	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27509935	C	C	27509935	1	2	9	0	1	0	0	0	0	0	0	0	6937	1131	39	4		4	GTF3C1	16	27509935	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	152110	27509935	62844818	15335	23486											
GTF3C1	2975	broad.mit.edu	37	chr16	27514292	27514292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcctgagctgtgcctccCagtcttcagggaactgctac	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27514292	A	A	27514292	3	1	9	1	0	0	0	0	1	0	0	0	6937	594	21	2	4642	2	GTF3C1	16	27514292	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4357	27514292	62840461	15336	23487											
KIAA0556	23247	broad.mit.edu	37	chr16	27692753	27692753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaatttgtctgcaaagcGgaaggacaatgctgaggttt	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27692753	T	T	27692753	3	4	9	1	0	0	0	0	1	0	0	0	8253	1116	39	1	872	1	KIAA0556	16	27692753	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178461	27692753	62662000	15337	23488											
KIAA0556	23247	broad.mit.edu	37	chr16	27751862	27751862	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaatctgtgagccaccCgggaaaaccccatcctggtt	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27751862	G	G	27751862	2	3	9	1	0	0	0	0	0	0	0	1	8253	639	23	4		4	KIAA0556	16	27751862	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59109	27751862	62602891	15338	23489											
EIF3CL	728689	broad.mit.edu	37	chr16	28734621	28734621	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggagtgggaaagggtcCggggcggagtgccgttggtt	23	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28734621	A	A	28734621	2	1	9	1	0	0	0	0	0	0	0	1	5055	643	23	1		1	EIF3CL	16	28734621	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	982759	28734621	61620132	15339	23490											
QPRT	23475	broad.mit.edu	37	chr16	29706199	29706199	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtctcctggttcctcccCgagggatcgaagctggtgcc	12	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29706199	A	A	29706199	2	1	9	1	0	0	0	0	0	0	0	1	12984	639	23	1		1	QPRT	16	29706199	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	971578	29706199	60648554	15340	23491											
KIF22	3835	broad.mit.edu	37	chr16	29808317	29808317	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttgtggatggaacagcGggagcaagtgatcccccctg	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29808317	T	T	29808317	2	4	9	1	0	0	0	0	0	0	0	1	8360	1103	39	1		1	KIF22	16	29808317	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	102118	29808317	60546436	15341	23492											
KIF22	3835	broad.mit.edu	37	chr16	29809874	29809874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaagggctggggaaacGgagaggaaaacctcacagtt	14	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29809874	T	T	29809874	1	4	9	0	1	0	0	0	0	0	0	0	8360	1131	39	1		1	KIF22	16	29809874	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1557	29809874	60544879	15342	23493											
MVP	9961	broad.mit.edu	37	chr16	29858996	29858996	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatgcaggggaggtgaccCttcaaaccagctgacttaag	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29858996	T	T	29858996	1	4	9	0	1	0	0	0	0	0	0	0	10090	696	24	4		4	MVP	16	29858996	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49122	29858996	60495757	15343	23494											
TAOK2	9344	broad.mit.edu	37	chr16	29989188	29989188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagctcttctctgacctccGggaaattggccatggcagct	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29989188	T	T	29989188	3	4	9	1	0	0	0	0	1	0	0	0	15667	1116	39	1	97	1	TAOK2	16	29989188	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	130192	29989188	60365565	15344	23495											
TAOK2	9344	broad.mit.edu	37	chr16	29994971	29994971	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaccactttgccaccatcCgaaccgcctccctggtgagt	9	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29994971	A	A	29994971	2	1	9	1	0	0	0	0	0	0	0	1	15667	644	23	1		1	TAOK2	16	29994971	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5783	29994971	60359782	15345	23496											
TAOK2	9344	broad.mit.edu	37	chr16	30002440	30002440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcttgagcggcaggccCgtgagatcgaggccttcgat	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30002440	A	A	30002440	3	1	9	1	0	0	0	0	1	0	0	0	15667	652	23	1	4247	1	TAOK2	16	30002440	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7469	30002440	60352313	15346	23497											
HIRIP3	8479	broad.mit.edu	37	chr16	30004781	30004781	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaggaaaccccttaccCgagccactgatgatgttcgc	11	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30004781	A	A	30004781	2	1	9	1	0	0	0	0	0	0	0	1	7188	666	23	1		1	HIRIP3	16	30004781	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2341	30004781	60349972	15347	23498											
PPP4C	5531	broad.mit.edu	37	chr16	30096341	30096341	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctccccaagagacacgGggcatcccctccaagaagcc	10	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30096341	T	T	30096341	2	4	9	1	0	0	0	0	0	0	0	1	12503	1219	43	2		2	PPP4C	16	30096341	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91560	30096341	60258412	15348	23499											
YPEL3	83719	broad.mit.edu	37	chr16	30106186	30106186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggccggtcagcagcaccCgctcctcggctggcccgcag	15	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30106186	A	A	30106186	3	1	9	1	0	0	0	0	1	0	0	0	17618	652	23	1	173	1	YPEL3	16	30106186	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9845	30106186	60248567	15349	23500											
MAPK3	5595	broad.mit.edu	37	chr16	30129758	30129758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggatgtacttgaggcccCgcaggatctggtagaggaag	16	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30129758	A	A	30129758	3	1	9	1	0	0	0	0	1	0	0	0	9371	652	23	1	765	1	MAPK3	16	30129758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23572	30129758	60224995	15350	23501											
CD2BP2	10421	broad.mit.edu	37	chr16	30365255	30365255	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagccagctgtctcggatCtgagcatcccggttcaggaa	11	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30365255	A	A	30365255	3	1	9	1	0	0	0	0	1	0	0	0	3025	912	32	3	699	3	CD2BP2	16	30365255	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	235497	30365255	59989498	15351	23502											
CD2BP2	10421	broad.mit.edu	37	chr16	30365604	30365604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgtttgcctttaaagcGgctcccaggaccccctgacc	10	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30365604	T	T	30365604	3	4	9	1	0	0	0	0	1	0	0	0	3025	1116	39	1	927	1	CD2BP2	16	30365604	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	349	30365604	59989149	15352	23503											
CD2BP2	10421	broad.mit.edu	37	chr16	30365975	30365975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcctcatctcccacgcCttggaaggtcactttcctct	5	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30365975	A	A	30365975	3	1	9	1	0	0	0	0	1	0	0	0	3025	681	24	2	1021	2	CD2BP2	16	30365975	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	371	30365975	59988778	15353	23504											
CD2BP2	10421	broad.mit.edu	37	chr16	30366006	30366006	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcctctttggcatgacGgggcaaagaggtgtttctca	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30366006	T	T	30366006	1	4	9	0	1	0	0	0	0	0	0	0	3025	1131	39	1		1	CD2BP2	16	30366006	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	30366006	59988747	15354	23505											
MYLPF	29895	broad.mit.edu	37	chr16	30387814	30387814	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggtcccatcaacttcacCgtcttcctgaccatgttcgg	8	15	3	1	rs149087136		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30387814	A	A	30387814	2	1	9	1	0	0	0	0	0	0	0	1	10154	639	23	1		1	MYLPF	16	30387814	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21808	30387814	59966939	15355	23506			18	21		16	15	5455	N	G_C	6.194584e-06
MYLPF	29895	broad.mit.edu	37	chr16	30387833	30387833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcttcctgaccatgttcGgggagaagctcaagggtgag	14	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30387833	T	T	30387833	3	4	9	1	0	0	0	0	1	0	0	0	10154	1116	39	1	276	1	MYLPF	16	30387833	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	30387833	59966920	15356	23507			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30391350	30391350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttccttcaactgatccCggatctcaggggaaacagat	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30391350	A	A	30391350	3	1	9	1	0	0	0	0	1	0	0	0	14172	652	23	1	560	1	SEPT1	16	30391350	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3517	30391350	59963403	15357	23508			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392319	30392319	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcttaccacccgccttcctCagaagcttctcctacaatct	5	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30392319	G	G	30392319	1	3	9	0	1	0	0	0	0	0	0	0	14172	841	29	4		4	SEPT1	16	30392319	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	969	30392319	59962434	15358	23509			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392379	30392379	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaaaggccacttcaagatCaaagaagtctaagctgaaat	8	8	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30392379	G	G	30392379	1	3	9	0	1	0	0	0	0	0	0	0	14172	841	29	4		4	SEPT1	16	30392379	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	30392379	59962374	15359	23510			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392400	30392400	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagaagtctaagctgaaatCaggtttggcttcacatgggg	12	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30392400	G	G	30392400	1	3	9	0	1	0	0	0	0	0	0	0	14172	841	29	4		4	SEPT1	16	30392400	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	30392400	59962353	15360	23511			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392439	30392439	+	Intron	SNP	C	T	T													ggtcaaaggtcagaggtcatCactcacaccttctgcttgag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30392439	T	T	30392439	1	4	9	0	1	0	0	0	0	0	0	0	14172	841	29	4		4	SEPT1	16	30392439	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	30392439	59962314	15361	23512	156	2	18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392443	30392443	+	Intron	SNP	C	A	A													aaaggtcagaggtcatcactCacaccttctgcttgagggcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30392443	A	A	30392443	1	1	9	0	1	0	0	0	0	0	0	0	14172	841	29	3		3	SEPT1	16	30392443	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4	30392443	59962310	15362	23513	156	2	18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392490	30392490	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggggcatcagagcatcCgctttgccaatgactgggat	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30392490	A	A	30392490	2	1	9	1	0	0	0	0	0	0	0	1	14172	639	23	1		1	SEPT1	16	30392490	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	30392490	59962263	15363	23514			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392525	30392525	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggatgatgttgactttctCgtgtactgcccggaggaagg	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30392525	A	A	30392525	4	1	9	1	0	0	0	0	0	1	0	0	14172	893	31	3	646	3	SEPT1	16	30392525	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	30392525	59962228	15364	23515			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392572	30392572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaggggccggagcctgcacCcagggattggtcattgccca	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30392572	T	T	30392572	1	4	9	0	1	0	0	0	0	0	0	0	14172	638	22	4		4	SEPT1	16	30392572	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	30392572	59962181	15365	23516			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30392703	30392703	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagaggcagcagtggactcGggagtcctggatgttcttcc	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30392703	T	T	30392703	2	4	9	1	0	0	0	0	0	0	0	1	14172	1124	39	1		1	SEPT1	16	30392703	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	131	30392703	59962050	15366	23517			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30393024	30393024	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaaaccagtcctgtaactCtccagggagtcgccactgtg	9	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30393024	T	T	30393024	1	4	9	0	1	0	0	0	0	0	0	0	14172	928	32	4		4	SEPT1	16	30393024	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	321	30393024	59961729	15367	23518			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30393127	30393127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccaggtgtgtccacaaGggtcagcttcactttcacac	9	12	3	0	rs139776214		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30393127	T	T	30393127	3	4	9	1	0	0	0	0	1	0	0	0	14172	1000	35	2	876	2	SEPT1	16	30393127	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	103	30393127	59961626	15368	23519			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30393171	30393171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcaatctctacgcccCggcgctcaatggccagggtc	9	17	3	0	rs41292380		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30393171	A	A	30393171	3	1	9	1	0	0	0	0	1	0	0	0	14172	652	23	1	920	1	SEPT1	16	30393171	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	30393171	59961582	15369	23520			18	21		16	15	5455	N	G_C	6.194584e-06
SEPT1	1731	broad.mit.edu	37	chr16	30393268	30393268	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaattaatttcctttgtCaatatcacagttgcctgcac	6	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30393268	T	T	30393268	1	4	9	0	1	0	0	0	0	0	0	0	14172	841	29	4		4	SEPT1	16	30393268	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	97	30393268	59961485	15370	23521			18	21		16	15	5455	N	G_C	6.194584e-06
ZNF48	197407	broad.mit.edu	37	chr16	30408682	30408682	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaacgtgatttctcagccGaatgagtttgaacatacccc	9	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30408682	T	T	30408682	2	4	9	1	0	0	0	0	0	0	0	1	18061	1045	37	3		3	ZNF48	16	30408682	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15414	30408682	59946071	15371	23522											
ZNF48	197407	broad.mit.edu	37	chr16	30408718	30408718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccacaggaagatgacttGgggttcaaggaagaagattt	12	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30408718	T	T	30408718	3	4	9	1	0	0	0	0	1	0	0	0	18061	1339	47	2	153	2	ZNF48	16	30408718	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	30408718	59946035	15372	23523											
ITGAL	3683	broad.mit.edu	37	chr16	30495162	30495162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaggacagaggtgttccGggaggagctgggggcccggc	19	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30495162	T	T	30495162	3	4	9	1	0	0	0	0	1	0	0	0	7956	1116	39	1	767	1	ITGAL	16	30495162	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86444	30495162	59859591	15373	23524											
ITGAL	3683	broad.mit.edu	37	chr16	30495266	30495266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcggccaaagacatcatcCgctacatcatcggggtaggg	12	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30495266	A	A	30495266	3	1	9	1	0	0	0	0	1	0	0	0	7956	652	23	1	871	1	ITGAL	16	30495266	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104	30495266	59859487	15374	23525											
ITGAL	3683	broad.mit.edu	37	chr16	30495499	30495499	+	Silent	SNP	G	T	T													aaatttgcatcaaaacccgcGagcgagtttgtgaaaattct					rs61734183	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30495499	T	T	30495499	2	4	9	1	0	0	0	0	0	0	0	1	7956	1045	37	3		3	ITGAL	16	30495499	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	233	30495499	59859254	15375	23526	157	2									
ITGAL	3683	broad.mit.edu	37	chr16	30495503	30495503	+	Nonsense_Mutation	SNP	G	T	T													ttgcatcaaaacccgcgagcGagtttgtgaaaattctggac							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30495503	T	T	30495503	4	4	9	1	0	0	0	0	0	1	0	0	7956	1059	37	3	959	3	ITGAL	16	30495503	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4	30495503	59859250	15376	23527	157	2									
ITGAL	3683	broad.mit.edu	37	chr16	30507469	30507469	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaccccggctacccactcGggcggtttggagaagccatc	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30507469	C	C	30507469	3	2	9	1	0	0	0	0	1	0	0	0	7956	1116	39	4	1609	4	ITGAL	16	30507469	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11966	30507469	59847284	15377	23528											
ITGAL	3683	broad.mit.edu	37	chr16	30510719	30510719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccaccggaccagaagacGggggttgttcccaggaggga	17	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30510719	T	T	30510719	3	4	9	1	0	0	0	0	1	0	0	0	7956	1116	39	1	2120	1	ITGAL	16	30510719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3250	30510719	59844034	15378	23529											
ITGAL	3683	broad.mit.edu	37	chr16	30518010	30518010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctgatcctccctcctcCatctttccctgatcatcccc	2	22	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30518010	A	A	30518010	1	1	9	0	1	0	0	0	0	0	0	0	7956	609	21	2		2	ITGAL	16	30518010	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7291	30518010	59836743	15379	23530											
ITGAL	3683	broad.mit.edu	37	chr16	30518030	30518030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctttccctgatcatcccCcacagatccagagccctgcg	6	18	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30518030	A	A	30518030	1	1	9	0	1	0	0	0	0	0	0	0	7956	638	22	2		2	ITGAL	16	30518030	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	30518030	59836723	15380	23531											
ITGAL	3683	broad.mit.edu	37	chr16	30521771	30521771	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcaatgtgagctctccCatcttcaaagcaggccactc	7	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30521771	A	A	30521771	2	1	9	1	0	0	0	0	0	0	0	1	7956	581	21	2		2	ITGAL	16	30521771	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3741	30521771	59832982	15381	23532											
ITGAL	3683	broad.mit.edu	37	chr16	30528332	30528332	+	Silent	SNP	C	A	A													atccacgaccacaacataccCaccctggaggctgtggttgg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30528332	A	A	30528332	2	1	9	1	0	0	0	0	0	0	0	1	7956	581	21	2		2	ITGAL	16	30528332	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6561	30528332	59826421	15382	23533	158	2									
ITGAL	3683	broad.mit.edu	37	chr16	30528336	30528336	+	Missense_Mutation	SNP	C	A	A													acgaccacaacatacccaccCtggaggctgtggttggggtg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30528336	A	A	30528336	3	1	9	1	0	0	0	0	1	0	0	0	7956	680	24	2	3007	2	ITGAL	16	30528336	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4	30528336	59826417	15383	23534	158	2									
ZNF768	79724	broad.mit.edu	37	chr16	30536021	30536021	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgtagggccgctcgccCgtgtgggagcgctggtgctg	17	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30536021	A	A	30536021	2	1	9	1	0	0	0	0	0	0	0	1	18270	639	23	1		1	ZNF768	16	30536021	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7685	30536021	59818732	15384	23535											
ZNF768	79724	broad.mit.edu	37	chr16	30536894	30536894	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggggtgaactcctacGgagatattcaaaggactctt	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30536894	T	T	30536894	2	4	9	1	0	0	0	0	0	0	0	1	18270	1103	39	1		1	ZNF768	16	30536894	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	873	30536894	59817859	15385	23536											
ZNF768	79724	broad.mit.edu	37	chr16	30536921	30536921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaaggactcttttcctcGgggttcagaagcatctccgc	9	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30536921	T	T	30536921	2	4	9	1	0	0	0	0	0	0	0	1	18270	1103	39	1		1	ZNF768	16	30536921	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	27	30536921	59817832	15386	23537											
ZNF768	79724	broad.mit.edu	37	chr16	30548620	30548620	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatttttggtagcatgacGggccactgaaaggtggaaag	13	6	1	2	rs150273634	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30548620	T	T	30548620	1	4	9	0	1	0	0	0	0	0	0	0	18270	1131	39	1		1	ZNF768	16	30548620	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	11699	30548620	59806133	15387	23538											
ZNF768	79724	broad.mit.edu	37	chr16	30548731	30548731	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatgacgccaaacttccCcaggtcctcctcaatcactg	6	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30548731	A	A	30548731	1	1	9	0	1	0	0	0	0	0	0	0	18270	638	22	2		2	ZNF768	16	30548731	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	111	30548731	59806022	15388	23539											
ZNF688	146542	broad.mit.edu	37	chr16	30583428	30583428	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaaagatgtaagggccCgaagcttcacttacccctct	8	12	3	2	rs28671006		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30583428	A	A	30583428	1	1	9	0	1	0	0	0	0	0	0	0	18220	667	23	1		1	ZNF688	16	30583428	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	34697	30583428	59771325	15389	23540											
ZNF689	115509	broad.mit.edu	37	chr16	30616673	30616673	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctgcctaggaatcagtcGgggtttgctgggcctccggc	15	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30616673	T	T	30616673	2	4	9	1	0	0	0	0	0	0	0	1	18221	1124	39	1		1	ZNF689	16	30616673	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33245	30616673	59738080	15390	23541											
PRR14	78994	broad.mit.edu	37	chr16	30663992	30663992	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagggaaaccttgtccCgtccagcctcattctatcac	8	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30663992	A	A	30663992	1	1	9	0	1	0	0	0	0	0	0	0	12692	667	23	1		1	PRR14	16	30663992	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	47319	30663992	59690761	15391	23542											
PRR14	78994	broad.mit.edu	37	chr16	30665504	30665504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagttgctggctcaggtGggatacctggaagttcccct	16	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30665504	T	T	30665504	1	4	9	0	1	0	0	0	0	0	0	0	12692	1363	47	2		2	PRR14	16	30665504	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1512	30665504	59689249	15392	23543											
PRR14	78994	broad.mit.edu	37	chr16	30666518	30666518	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcatccacttccttctcCgaaccagcagaacccaggta	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30666518	A	A	30666518	2	1	9	1	0	0	0	0	0	0	0	1	12692	639	23	1		1	PRR14	16	30666518	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1014	30666518	59688235	15393	23544											
PRR14	78994	broad.mit.edu	37	chr16	30667430	30667430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcaaggaagctccggcGggctgtggaatttcgggaca	15	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30667430	T	T	30667430	3	4	9	1	0	0	0	0	1	0	0	0	12692	1116	39	1	1598	1	PRR14	16	30667430	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	912	30667430	59687323	15394	23545											
PRR14	78994	broad.mit.edu	37	chr16	30667518	30667518	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcaggactgttcctccCaatgtggcccccagccctga	13	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30667518	A	A	30667518	2	1	9	1	0	0	0	0	0	0	0	1	12692	581	21	2		2	PRR14	16	30667518	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	30667518	59687235	15395	23546											
FBRS	64319	broad.mit.edu	37	chr16	30680873	30680873	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcagcaagaccccaccGggagcccttttgggggcacc	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30680873	T	T	30680873	2	4	9	1	0	0	0	0	0	0	0	1	5764	1103	39	1		1	FBRS	16	30680873	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13355	30680873	59673880	15396	23547											
SRCAP	10847	broad.mit.edu	37	chr16	30715473	30715473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcaggcggcatctcccCgcagcacatagctcaagatt	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30715473	A	A	30715473	3	1	9	1	0	0	0	0	1	0	0	0	15253	652	23	1	149	1	SRCAP	16	30715473	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34600	30715473	59639280	15397	23548											
SRCAP	10847	broad.mit.edu	37	chr16	30720772	30720772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggtctccctaaacatcGggtaaaagtacataaataaa	7	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30720772	T	T	30720772	1	4	9	0	1	0	0	0	0	0	0	0	15253	1131	39	1		1	SRCAP	16	30720772	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5299	30720772	59633981	15398	23549											
SRCAP	10847	broad.mit.edu	37	chr16	30720899	30720899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccctggacctgcatttGgacttcattgtggggcaaac	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30720899	T	T	30720899	3	4	9	1	0	0	0	0	1	0	0	0	15253	1339	47	2	717	2	SRCAP	16	30720899	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127	30720899	59633854	15399	23550											
SRCAP	10847	broad.mit.edu	37	chr16	30720999	30720999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctcttccccttgcctcGgctcttcctcagctgcctcc	7	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30720999	T	T	30720999	3	4	9	1	0	0	0	0	1	0	0	0	15253	1116	39	1	817	1	SRCAP	16	30720999	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	100	30720999	59633754	15400	23551											
SRCAP	10847	broad.mit.edu	37	chr16	30727453	30727453	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcagatgcccaaaaagtacGagcatgttatccgctgcagg	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30727453	T	T	30727453	4	4	9	1	0	0	0	0	0	1	0	0	15253	1059	37	3	2618	3	SRCAP	16	30727453	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6454	30727453	59627300	15401	23552											
SRCAP	10847	broad.mit.edu	37	chr16	30727727	30727727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgaccggttacctcccCtttcatcaccccaggcatct	5	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30727727	A	A	30727727	3	1	9	1	0	0	0	0	1	0	0	0	15253	681	24	2	2806	2	SRCAP	16	30727727	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	274	30727727	59627026	15402	23553											
SRCAP	10847	broad.mit.edu	37	chr16	30731484	30731484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttctttcttgtggcagcGgatagacatgggtcgatttg	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30731484	T	T	30731484	3	4	9	1	0	0	0	0	1	0	0	0	15253	1130	39	1	2885	1	SRCAP	16	30731484	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3757	30731484	59623269	15403	23554											
SRCAP	10847	broad.mit.edu	37	chr16	30731534	30731534	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctggaaggtcgtgtctctCgatatgaggcagacacattt	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30731534	A	A	30731534	2	1	9	1	0	0	0	0	0	0	0	1	15253	876	31	3		3	SRCAP	16	30731534	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	30731534	59623219	15404	23555											
SRCAP	10847	broad.mit.edu	37	chr16	30731561	30731561	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagacacatttctgcccCggcaccgcctctctcgccgg	10	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30731561	A	A	30731561	2	1	9	1	0	0	0	0	0	0	0	1	15253	643	23	1		1	SRCAP	16	30731561	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	30731561	59623192	15405	23556											
SRCAP	10847	broad.mit.edu	37	chr16	30731911	30731911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattccttgttctcctttGggtctctttccttttctttg	5	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30731911	T	T	30731911	1	4	9	0	1	0	0	0	0	0	0	0	15253	1363	47	2		2	SRCAP	16	30731911	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	350	30731911	59622842	15406	23557											
SRCAP	10847	broad.mit.edu	37	chr16	30732600	30732600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccacctgccccagttcGcctgagcccagccccacctc	6	22	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30732600	T	T	30732600	3	4	9	1	0	0	0	0	1	0	0	0	15253	1087	38	3	3418	3	SRCAP	16	30732600	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	689	30732600	59622153	15407	23558											
SRCAP	10847	broad.mit.edu	37	chr16	30733971	30733971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatccaggccgtggcccCgacccctggccctacccctg	9	22	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30733971	A	A	30733971	3	1	9	1	0	0	0	0	1	0	0	0	15253	652	23	1	3876	1	SRCAP	16	30733971	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1371	30733971	59620782	15408	23559											
SRCAP	10847	broad.mit.edu	37	chr16	30735149	30735149	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgactgtttctgcttcGggcccagctctgttgaccag	10	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30735149	T	T	30735149	2	4	9	1	0	0	0	0	0	0	0	1	15253	1103	39	1		1	SRCAP	16	30735149	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1178	30735149	59619604	15409	23560											
SRCAP	10847	broad.mit.edu	37	chr16	30735518	30735518	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctctggctcctatggcGgctccacagacagcaattct	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30735518	T	T	30735518	2	4	9	1	0	0	0	0	0	0	0	1	15253	1103	39	1		1	SRCAP	16	30735518	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	369	30735518	59619235	15410	23561											
SRCAP	10847	broad.mit.edu	37	chr16	30735745	30735745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaactatgctaccagcccCggttccgtcacctctcccga	6	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30735745	A	A	30735745	3	1	9	1	0	0	0	0	1	0	0	0	15253	652	23	1	5090	1	SRCAP	16	30735745	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	227	30735745	59619008	15411	23562											
SRCAP	10847	broad.mit.edu	37	chr16	30736264	30736264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtcaccatggtatcccGgctgcctgtttccaaggatg	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30736264	T	T	30736264	3	4	9	1	0	0	0	0	1	0	0	0	15253	1116	39	1	5609	1	SRCAP	16	30736264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	519	30736264	59618489	15412	23563											
SRCAP	10847	broad.mit.edu	37	chr16	30736284	30736284	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctgcctgtttccaaggatGagcctgacacactgacattg	11	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30736284	T	T	30736284	4	4	9	1	0	0	0	0	0	1	0	0	15253	1291	45	3	5629	3	SRCAP	16	30736284	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	30736284	59618469	15413	23564											
SRCAP	10847	broad.mit.edu	37	chr16	30740816	30740816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctctgagctctggccccGggctcgtcctttgcaccgta	12	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30740816	T	T	30740816	3	4	9	1	0	0	0	0	1	0	0	0	15253	1116	39	1	6148	1	SRCAP	16	30740816	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4532	30740816	59613937	15414	23565											
SRCAP	10847	broad.mit.edu	37	chr16	30744681	30744681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttcacccagatgaccCgaatgctggatgtattggag	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30744681	A	A	30744681	2	1	9	1	0	0	0	0	0	0	0	1	15253	644	23	1		1	SRCAP	16	30744681	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3865	30744681	59610072	15415	23566											
SRCAP	10847	broad.mit.edu	37	chr16	30747680	30747680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggatgaggagatgtccCgggctgagcaggaaattgct	16	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30747680	A	A	30747680	2	1	9	1	0	0	0	0	0	0	0	1	15253	643	23	1		1	SRCAP	16	30747680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2999	30747680	59607073	15416	23567											
SRCAP	10847	broad.mit.edu	37	chr16	30748534	30748534	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaagcccctgagaggccGgggactcgtgtcagtgagcg	16	12	1	2	rs150413453	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30748534	T	T	30748534	2	4	9	1	0	0	0	0	0	0	0	1	15253	1103	39	1		1	SRCAP	16	30748534	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	854	30748534	59606219	15417	23568											
SRCAP	10847	broad.mit.edu	37	chr16	30749843	30749843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagcagcccttcattgctCgccgtcacattgagctgggg	11	15	2	1	rs144623507	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30749843	A	A	30749843	3	1	9	1	0	0	0	0	1	0	0	0	15253	884	31	3	8608	3	SRCAP	16	30749843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1309	30749843	59604910	15418	23569											
PHKG2	5261	broad.mit.edu	37	chr16	30762913	30762913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctagcttcatgttcctGgtgtttgacctgtgagtatc	9	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30762913	T	T	30762913	2	4	9	1	0	0	0	0	0	0	0	1	11942	1335	47	2		2	PHKG2	16	30762913	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13070	30762913	59591840	15419	23570											
PHKG2	5261	broad.mit.edu	37	chr16	30762963	30762963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctgagaagcctcctccCcacctccatgtatggcccag	7	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30762963	A	A	30762963	1	1	9	0	1	0	0	0	0	0	0	0	11942	638	22	2		2	PHKG2	16	30762963	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	30762963	59591790	15420	23571											
PHKG2	5261	broad.mit.edu	37	chr16	30767541	30767541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatctagcgccagagatcCttaaatgctccatggatgaa	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30767541	A	A	30767541	3	1	9	1	0	0	0	0	1	0	0	0	11942	681	24	2	617	2	PHKG2	16	30767541	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4578	30767541	59587212	15421	23572											
C16orf93	90835	broad.mit.edu	37	chr16	30768781	30768781	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggcccagacctttattgGggaaaatgttgggggtcact	13	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30768781	T	T	30768781	1	4	9	0	1	0	0	0	0	0	0	0	1860	1247	43	2		2	C16orf93	16	30768781	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1240	30768781	59585972	15422	23573											
C16orf93	90835	broad.mit.edu	37	chr16	30768824	30768824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgctcttgcctttaccCggaggtagctggaagggccg	14	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30768824	A	A	30768824	2	1	9	1	0	0	0	0	0	0	0	1	1860	639	23	1		1	C16orf93	16	30768824	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	30768824	59585929	15423	23574											
C16orf93	90835	broad.mit.edu	37	chr16	30770406	30770406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcctgctcctccatctcCttgctttcttctttctctgc	4	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30770406	A	A	30770406	3	1	9	1	0	0	0	0	1	0	0	0	1860	680	24	2	259	2	C16orf93	16	30770406	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1582	30770406	59584347	15424	23575											
RNF40	9810	broad.mit.edu	37	chr16	30774766	30774766	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgtggaagcccttctcCgatgccatgagagccagggg	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30774766	A	A	30774766	2	1	9	1	0	0	0	0	0	0	0	1	13604	644	23	1		1	RNF40	16	30774766	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4360	30774766	59579987	15425	23576											
RNF40	9810	broad.mit.edu	37	chr16	30780614	30780614	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgggaaaaggatgatgcCaactttaagctaatgtcaga	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30780614	A	A	30780614	2	1	9	1	0	0	0	0	0	0	0	1	13604	581	21	2		2	RNF40	16	30780614	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5848	30780614	59574139	15426	23577											
RNF40	9810	broad.mit.edu	37	chr16	30780670	30780670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagattcacaagctgctgcGggaggagaaggatgagttgg	16	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30780670	T	T	30780670	3	4	9	1	0	0	0	0	1	0	0	0	13604	1116	39	1	2469	1	RNF40	16	30780670	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56	30780670	59574083	15427	23578											
RNF40	9810	broad.mit.edu	37	chr16	30783259	30783259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcagagagccgggctgctCgtgagaaagagagcttcaac	15	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30783259	A	A	30783259	3	1	9	1	0	0	0	0	1	0	0	0	13604	884	31	3	2758	3	RNF40	16	30783259	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2589	30783259	59571494	15428	23579											
ZNF629	23361	broad.mit.edu	37	chr16	30793150	30793150	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttccactagggttttGgggttttgcccttccccatg	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30793150	T	T	30793150	2	4	9	1	0	0	0	0	0	0	0	1	18180	1335	47	2		2	ZNF629	16	30793150	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9891	30793150	59561603	15429	23580											
ZNF629	23361	broad.mit.edu	37	chr16	30793255	30793255	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctctggaggggggtcctcGggattggggggtttttcctg	19	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30793255	T	T	30793255	2	4	9	1	0	0	0	0	0	0	0	1	18180	1103	39	1		1	ZNF629	16	30793255	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	105	30793255	59561498	15430	23581											
ZNF629	23361	broad.mit.edu	37	chr16	30793360	30793360	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcggtagggtctggccccCagggggctcctgagatgctc	16	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30793360	A	A	30793360	2	1	9	1	0	0	0	0	0	0	0	1	18180	581	21	2		2	ZNF629	16	30793360	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	105	30793360	59561393	15431	23582											
ZNF629	23361	broad.mit.edu	37	chr16	30794182	30794182	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagctcttgccgcactcGgggcacttgtagggcttctc	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30794182	T	T	30794182	2	4	9	1	0	0	0	0	0	0	0	1	18180	1103	39	1		1	ZNF629	16	30794182	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	822	30794182	59560571	15432	23583											
ZNF629	23361	broad.mit.edu	37	chr16	30794259	30794259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcggatgaagctcttgcCgcagtcggaacacttgtagg	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30794259	A	A	30794259	3	1	9	1	0	0	0	0	1	0	0	0	18180	652	23	1	1223	1	ZNF629	16	30794259	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	30794259	59560494	15433	23584											
ZNF629	23361	broad.mit.edu	37	chr16	30794310	30794310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggatgcgctggtggcGgataagggtggagctcatga	20	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30794310	T	T	30794310	3	4	9	1	0	0	0	0	1	0	0	0	18180	1116	39	1	1274	1	ZNF629	16	30794310	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51	30794310	59560443	15434	23585											
BCL7C	9274	broad.mit.edu	37	chr16	30899187	30899187	+	Nonstop_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacaggcaggccggcttctCaggggtcaggggcatttggg	19	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30899187	A	A	30899187	4	1	9	1	0	0	0	0	0	0	0	0	1385	837	29	3	4	3	BCL7C	16	30899187	Nonstop_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104877	30899187	59455566	15435	23586											
BCL7C	9274	broad.mit.edu	37	chr16	30899237	30899237	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtgggggggcaccctcCgagtcctctgtgtcaccctg	14	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30899237	A	A	30899237	2	1	9	1	0	0	0	0	0	0	0	1	1385	639	23	1		1	BCL7C	16	30899237	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50	30899237	59455516	15436	23587											
SETD1A	9739	broad.mit.edu	37	chr16	30974818	30974818	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacccctcagactgtgccCactgggggcaaggccctgag	12	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30974818	A	A	30974818	2	1	9	1	0	0	0	0	0	0	0	1	14243	581	21	2		2	SETD1A	16	30974818	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75581	30974818	59379935	15437	23588											
SETD1A	9739	broad.mit.edu	37	chr16	30976229	30976229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccacgccgggccacacGggaggaaccccctggagccc	12	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30976229	T	T	30976229	3	4	9	1	0	0	0	0	1	0	0	0	14243	1116	39	1	1188	1	SETD1A	16	30976229	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1411	30976229	59378524	15438	23589											
SETD1A	9739	broad.mit.edu	37	chr16	30976367	30976367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcagaggctccaccccCggagcctccagaacctggtg	11	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30976367	A	A	30976367	3	1	9	1	0	0	0	0	1	0	0	0	14243	652	23	1	1326	1	SETD1A	16	30976367	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138	30976367	59378386	15439	23590											
SETD1A	9739	broad.mit.edu	37	chr16	30977352	30977352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggggaggccttcctccCgtttccacccccgcaggagg	12	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30977352	A	A	30977352	3	1	9	1	0	0	0	0	1	0	0	0	14243	652	23	1	2176	1	SETD1A	16	30977352	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	985	30977352	59377401	15440	23591											
STX1B	112755	broad.mit.edu	37	chr16	31004540	31004540	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaatgttccacgttgtactCgatgcggtcaatcatctctc	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31004540	A	A	31004540	4	1	9	1	0	0	0	0	0	1	0	0	15462	893	31	3	177	3	STX1B	16	31004540	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27188	31004540	59350213	15441	23592											
STX1B	112755	broad.mit.edu	37	chr16	31012232	31012232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttccttcctggttgaGggattgtactcctcaccttt	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31012232	T	T	31012232	1	4	9	0	1	0	0	0	0	0	0	0	15462	1015	35	2		2	STX1B	16	31012232	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7692	31012232	59342521	15442	23593											
STX1B	112755	broad.mit.edu	37	chr16	31012479	31012479	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacctgctccacatcctcCgacagtttctcaatgcagcc	5	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31012479	A	A	31012479	2	1	9	1	0	0	0	0	0	0	0	1	15462	639	23	1		1	STX1B	16	31012479	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	247	31012479	59342274	15443	23594											
STX4	6810	broad.mit.edu	37	chr16	31045559	31045559	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccccaggtccggacaattCggcagactattgtcaaactg	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31045559	A	A	31045559	2	1	9	1	0	0	0	0	0	0	0	1	15465	875	31	3		3	STX4	16	31045559	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33080	31045559	59309194	15444	23595											
ZNF646	9726	broad.mit.edu	37	chr16	31090901	31090901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgccctgtctgctccCgctgctaccccaacctggct	7	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31090901	A	A	31090901	3	1	9	1	0	0	0	0	1	0	0	0	18189	652	23	1	3258	1	ZNF646	16	31090901	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45342	31090901	59263852	15445	23596											
ZNF646	9726	broad.mit.edu	37	chr16	31090928	31090928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccaacctggctgcctacCgtaatcatctgcggaaccac	7	17	2	0	rs148231180		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31090928	A	A	31090928	3	1	9	1	0	0	0	0	1	0	0	0	18189	652	23	1	3285	1	ZNF646	16	31090928	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27	31090928	59263825	15446	23597											
ZNF646	9726	broad.mit.edu	37	chr16	31091543	31091543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgggaagatcggcccttcCgctgtgggcagtgcgggcgg	18	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31091543	A	A	31091543	3	1	9	1	0	0	0	0	1	0	0	0	18189	652	23	1	3900	1	ZNF646	16	31091543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	615	31091543	59263210	15447	23598											
VKORC1	79001	broad.mit.edu	37	chr16	31104726	31104726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacatgctccaccagccCgaaacccctgccccacctgg	7	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31104726	A	A	31104726	3	1	9	1	0	0	0	0	1	0	0	0	17299	652	23	1	309	1	VKORC1	16	31104726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13183	31104726	59250027	15448	23599											
BCKDK	10295	broad.mit.edu	37	chr16	31123234	31123234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctcacaaagatctggaccGggtcatggactaccacttca	9	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31123234	T	T	31123234	3	4	9	1	0	0	0	0	1	0	0	0	1366	1116	39	1	1018	1	BCKDK	16	31123234	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18508	31123234	59231519	15449	23600											
MYST1	84148	broad.mit.edu	37	chr16	31141900	31141900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatcctgcgggacttccGgggcacactgtccatcaagg	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31141900	T	T	31141900	3	4	9	1	0	0	0	0	1	0	0	0	10196	1116	39	1	1164	1	MYST1	16	31141900	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18666	31141900	59212853	15450	23601											
FUS	2521	broad.mit.edu	37	chr16	31200487	31200487	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatctttgtgcaaggcctGggtgagaatgttacaattga	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31200487	T	T	31200487	2	4	9	1	0	0	0	0	0	0	0	1	6160	1335	47	2		2	FUS	16	31200487	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	58587	31200487	59154266	15451	23602											
TRIM72	493829	broad.mit.edu	37	chr16	31232257	31232257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgagagcaacctggccCtgtccctttgcccgacttgt	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31232257	A	A	31232257	1	1	9	0	1	0	0	0	0	0	0	0	16670	696	24	2		2	TRIM72	16	31232257	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31770	31232257	59122496	15452	23603											
ITGAM	3684	broad.mit.edu	37	chr16	31282266	31282266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattcatactcttttcccCttccccagggtgtcctcaag	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31282266	A	A	31282266	1	1	9	0	1	0	0	0	0	0	0	0	7957	696	24	2		2	ITGAM	16	31282266	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50009	31282266	59072487	15453	23604											
ITGAM	3684	broad.mit.edu	37	chr16	31309099	31309099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgatgctgttctctacGgggagcagggccaaccctgg	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31309099	T	T	31309099	3	4	9	1	0	0	0	0	1	0	0	0	7957	1116	39	1	1588	1	ITGAM	16	31309099	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26833	31309099	59045654	15454	23605											
ITGAM	3684	broad.mit.edu	37	chr16	31332789	31332789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgtccctttaggtccCagccagtactgagagtcaag	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31332789	A	A	31332789	3	1	9	1	0	0	0	0	1	0	0	0	7957	595	21	2	1908	2	ITGAM	16	31332789	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23690	31332789	59021964	15455	23606											
ITGAM	3684	broad.mit.edu	37	chr16	31338115	31338115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccattaatcagatgacGggcatttgggttattttttc	9	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31338115	T	T	31338115	1	4	9	0	1	0	0	0	0	0	0	0	7957	1131	39	1		1	ITGAM	16	31338115	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5326	31338115	59016638	15456	23607											
ITGAX	3687	broad.mit.edu	37	chr16	31393207	31393207	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacgggacacagaccccCagcccgcccagtgagaaatg	11	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31393207	A	A	31393207	2	1	9	1	0	0	0	0	0	0	0	1	7959	581	21	2		2	ITGAX	16	31393207	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55092	31393207	58961546	15457	23608											
ITGAD	3681	broad.mit.edu	37	chr16	31422116	31422116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggtcctgggggcccccCgctaccagcataccgggaag	13	16	0	0	rs140839965	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422116	A	A	31422116	3	1	9	1	0	0	0	0	1	0	0	0	7954	652	23	1	1319	1	ITGAD	16	31422116	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28909	31422116	58932637	15458	23609											
ITGAD	3681	broad.mit.edu	37	chr16	31425991	31425991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctggcctggagcaccccCgttctctgctgagcgaggtg	15	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31425991	A	A	31425991	1	1	9	0	1	0	0	0	0	0	0	0	7954	667	23	1		1	ITGAD	16	31425991	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3875	31425991	58928762	15459	23610											
ITGAD	3681	broad.mit.edu	37	chr16	31427905	31427905	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcaggtgaggattcctacGgaaccgtggtcagcctctac	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31427905	T	T	31427905	4	4	9	1	0	0	0	0	0	1	0	0	7954	1117	39	1	2515	1	ITGAD	16	31427905	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1914	31427905	58926848	15460	23611											
TGFB1I1	7041	broad.mit.edu	37	chr16	31485199	31485199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcctgcagccccggcgGcccctccattctcctcttcc	7	21	2	0	rs149961993	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31485199	T	T	31485199	3	4	9	1	0	0	0	0	1	0	0	0	15940	1203	42	3	240	3	TGFB1I1	16	31485199	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	57294	31485199	58869554	15461	23612											
SLC5A2	6524	broad.mit.edu	37	chr16	31498731	31498731	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgggttacggtaggggctCgcctaccagggaggggcgcg	19	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31498731	A	A	31498731	1	1	9	0	1	0	0	0	0	0	0	0	14779	899	31	3		3	SLC5A2	16	31498731	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	13532	31498731	58856022	15462	23613											
SLC5A2	6524	broad.mit.edu	37	chr16	31499409	31499409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgacccacatcaaggcGggctgcatcctgtgtgggta	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31499409	T	T	31499409	2	4	9	1	0	0	0	0	0	0	0	1	14779	1103	39	1		1	SLC5A2	16	31499409	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	678	31499409	58855344	15463	23614											
ZNF267	10308	broad.mit.edu	37	chr16	31926909	31926909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtggaaaagcttttaacCgtagttcatgccttactcaa	7	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31926909	A	A	31926909	3	1	9	1	0	0	0	0	1	0	0	0	17932	652	23	1	1353	1	ZNF267	16	31926909	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	427500	31926909	58427844	15464	23615											
SHCBP1	79801	broad.mit.edu	37	chr16	46637442	46637442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttggttgtgtgtcttcCatactcaccttccaactcaa	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46637442	A	A	46637442	1	1	9	0	1	0	0	0	0	0	0	0	14387	609	21	2		2	SHCBP1	16	46637442	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14710533	46637442	43717311	15465	23616											
VPS35	55737	broad.mit.edu	37	chr16	46712915	46712915	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgcaccaaatttgttccCactaaaattctcagttcttg	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46712915	A	A	46712915	2	1	9	1	0	0	0	0	0	0	0	1	17330	581	21	2		2	VPS35	16	46712915	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	75473	46712915	43641838	15466	23617											
MYLK3	91807	broad.mit.edu	37	chr16	46744472	46744472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggaagaaggaccttcacGgtcagcagtcctgcccagct	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46744472	T	T	46744472	1	4	9	0	1	0	0	0	0	0	0	0	10152	1131	39	1		1	MYLK3	16	46744472	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	31557	46744472	43610281	15467	23618											
MYLK3	91807	broad.mit.edu	37	chr16	46744630	46744630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtcagcatcaaaatccCagctacagtttacaatgaaa	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46744630	A	A	46744630	3	1	9	1	0	0	0	0	1	0	0	0	10152	595	21	2	285	2	MYLK3	16	46744630	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158	46744630	43610123	15468	23619											
GPT2	84706	broad.mit.edu	37	chr16	46950578	46950578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcatagaagatgtgatcCactttgcctgggaagagaag	13	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46950578	A	A	46950578	3	1	9	1	0	0	0	0	1	0	0	0	6804	594	21	2	881	2	GPT2	16	46950578	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	205948	46950578	43404175	15469	23620											
DNAJA2	10294	broad.mit.edu	37	chr16	46990916	46990916	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatgtggaaagaaaatcCacctgtgcaatttgtttgca	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46990916	A	A	46990916	1	1	9	0	1	0	0	0	0	0	0	0	4652	609	21	2		2	DNAJA2	16	46990916	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	40338	46990916	43363837	15470	23621											
DNAJA2	10294	broad.mit.edu	37	chr16	46991041	46991041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgaccacctcctgagcctCgagtgctatcaaattcctga	7	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46991041	A	A	46991041	3	1	9	1	0	0	0	0	1	0	0	0	4652	884	31	3	103	3	DNAJA2	16	46991041	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125	46991041	43363712	15471	23622											
DNAJA2	10294	broad.mit.edu	37	chr16	46998593	46998593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggcctggtctgcttccCcagtgaatgtaattctctgt	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46998593	A	A	46998593	3	1	9	1	0	0	0	0	1	0	0	0	4652	623	22	2	550	2	DNAJA2	16	46998593	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7552	46998593	43356160	15472	23623											
NETO2	81831	broad.mit.edu	37	chr16	47117249	47117249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcagggcactcatgtccCtgtttgaaagtgtaactact	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47117249	A	A	47117249	3	1	9	1	0	0	0	0	1	0	0	0	10435	680	24	2	120	2	NETO2	16	47117249	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118656	47117249	43237504	15473	23624											
NETO2	81831	broad.mit.edu	37	chr16	47143453	47143453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgactaccttcatctgccCacattcgaatcactccaatt	4	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47143453	A	A	47143453	3	1	9	1	0	0	0	0	1	0	0	0	10435	595	21	2	765	2	NETO2	16	47143453	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26204	47143453	43211300	15474	23625											
NETO2	81831	broad.mit.edu	37	chr16	47165917	47165917	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcaatcccttccactacCagtactgttattaacaacac	4	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47165917	A	A	47165917	2	1	9	1	0	0	0	0	0	0	0	1	10435	581	21	2		2	NETO2	16	47165917	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22464	47165917	43188836	15475	23626											
ITFG1	81533	broad.mit.edu	37	chr16	47196468	47196468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttttctccagatggacGgggaataccaacgtagagat	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47196468	T	T	47196468	3	4	9	1	0	0	0	0	1	0	0	0	7939	1116	39	1	293	1	ITFG1	16	47196468	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30551	47196468	43158285	15476	23627											
ABCC12	94160	broad.mit.edu	37	chr16	48174704	48174704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcggtagttgatggccCaggcaagggcccaaaagaag	15	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48174704	A	A	48174704	3	1	9	1	0	0	0	0	1	0	0	0	52	595	21	2	3632	2	ABCC12	16	48174704	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	978236	48174704	42180049	15477	23628											
ABCC12	94160	broad.mit.edu	37	chr16	48180330	48180330	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggtagggtccttcaccCaccatcctgatggcagcctg	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48180330	A	A	48180330	2	1	9	1	0	0	0	0	0	0	0	1	52	581	21	2		2	ABCC12	16	48180330	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5626	48180330	42174423	15478	23629											
ABCC11	85320	broad.mit.edu	37	chr16	48204834	48204834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcctctccaaggcatccCagatctgctggtcagtgtga	10	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48204834	A	A	48204834	3	1	9	1	0	0	0	0	1	0	0	0	51	595	21	2	421	2	ABCC11	16	48204834	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24504	48204834	42149919	15479	23630											
ABCC11	85320	broad.mit.edu	37	chr16	48232117	48232117	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctttttctgcattaactCactgtgagttccattttcac	4	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48232117	A	A	48232117	4	1	9	1	0	0	0	0	0	1	0	0	51	835	29	3	2056	3	ABCC11	16	48232117	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27283	48232117	42122636	15480	23631											
ABCC11	85320	broad.mit.edu	37	chr16	48242378	48242378	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgctcttaccactcccCgtgttgccgcagacccctaa	8	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48242378	A	A	48242378	2	1	9	1	0	0	0	0	0	0	0	1	51	639	23	1		1	ABCC11	16	48242378	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10261	48242378	42112375	15481	23632											
LONP2	83752	broad.mit.edu	37	chr16	48290626	48290626	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcttgacatcaattatcCgaacaagcaacaaagagaaa	5	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48290626	A	A	48290626	2	1	9	1	0	0	0	0	0	0	0	1	8980	644	23	1		1	LONP2	16	48290626	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48248	48290626	42064127	15482	23633											
LONP2	83752	broad.mit.edu	37	chr16	48333621	48333621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccataggcacttgatccCcaagcagctggaacaacatg	9	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48333621	A	A	48333621	3	1	9	1	0	0	0	0	1	0	0	0	8980	623	22	2	1621	2	LONP2	16	48333621	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42995	48333621	42021132	15483	23634											
LONP2	83752	broad.mit.edu	37	chr16	48368253	48368253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagacatccttgggccccCgatgtatgaaatggaggtga	13	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48368253	A	A	48368253	3	1	9	1	0	0	0	0	1	0	0	0	8980	652	23	1	1968	1	LONP2	16	48368253	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34632	48368253	41986500	15484	23635											
LONP2	83752	broad.mit.edu	37	chr16	48382085	48382085	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagctgtcacaaaagatGgaccatctgctggagttacc	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48382085	T	T	48382085	4	4	9	1	0	0	0	0	0	1	0	0	8980	1349	47	2	2275	2	LONP2	16	48382085	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13832	48382085	41972668	15485	23636											
N4BP1	9683	broad.mit.edu	37	chr16	48594981	48594981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggctgctggtgtaaacCattttcaggaaaaagtggaa	11	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48594981	A	A	48594981	3	1	9	1	0	0	0	0	1	0	0	0	10203	594	21	2	1141	2	N4BP1	16	48594981	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	212896	48594981	41759772	15486	23637											
N4BP1	9683	broad.mit.edu	37	chr16	48596055	48596055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgtgtaattgtctgcatGggcttcaacaaattgtttga	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48596055	T	T	48596055	3	4	9	1	0	0	0	0	1	0	0	0	10203	1348	47	2	2215	2	N4BP1	16	48596055	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1074	48596055	41758698	15487	23638											
ZNF423	23090	broad.mit.edu	37	chr16	49557603	49557603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagatcttgtcctcctgccCgtgcacggcaaagatgtgct	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49557603	A	A	49557603	3	1	9	1	0	0	0	0	1	0	0	0	18025	652	23	1	105	1	ZNF423	16	49557603	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	961548	49557603	40797150	15488	23639											
ZNF423	23090	broad.mit.edu	37	chr16	49672019	49672019	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgtggttgctggagtcGggctgccggtggctgtccag	17	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49672019	T	T	49672019	2	4	9	1	0	0	0	0	0	0	0	1	18025	1103	39	1		1	ZNF423	16	49672019	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	114416	49672019	40682734	15489	23640											
HEATR3	55027	broad.mit.edu	37	chr16	50118035	50118035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttctgcgtggtttgccCgcttcccagatccctctgat	9	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50118035	A	A	50118035	1	1	9	0	1	0	0	0	0	0	0	0	7096	667	23	1		1	HEATR3	16	50118035	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	446016	50118035	40236718	15490	23641											
HEATR3	55027	broad.mit.edu	37	chr16	50118049	50118049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcccgcttcccagatccCtctgatgacgaatgggaaga	10	12	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50118049	A	A	50118049	2	1	9	1	0	0	0	0	0	0	0	1	7096	668	24	2		2	HEATR3	16	50118049	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14	50118049	40236704	15491	23642											
HEATR3	55027	broad.mit.edu	37	chr16	50128647	50128647	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgttgactttctagaagcCataagtagtgctttgagggc	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50128647	A	A	50128647	2	1	9	1	0	0	0	0	0	0	0	1	7096	581	21	2		2	HEATR3	16	50128647	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10598	50128647	40226106	15492	23643											
BRD7	29117	broad.mit.edu	37	chr16	50402142	50402142	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcgtgccccgagctgccCgtggagagttcggtgacttc	15	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50402142	A	A	50402142	2	1	9	1	0	0	0	0	0	0	0	1	1514	639	23	1		1	BRD7	16	50402142	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	273495	50402142	39952611	15493	23644											
NKD1	85407	broad.mit.edu	37	chr16	50642278	50642278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcggctggaaggtattcGgagtccattgctctcttccc	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50642278	T	T	50642278	1	4	9	0	1	0	0	0	0	0	0	0	10536	1131	39	1		1	NKD1	16	50642278	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	240136	50642278	39712475	15494	23645											
NOD2	64127	broad.mit.edu	37	chr16	50733803	50733803	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacctggcatgggagcggGgtttcgtcagccagtatgaa	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50733803	A	A	50733803	3	1	9	1	0	0	0	0	1	0	0	0	10612	1232	43	4	484	4	NOD2	16	50733803	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91525	50733803	39620950	15495	23646											
CYLD	1540	broad.mit.edu	37	chr16	50811751	50811751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataggatctacctcagaccCtggaaatagaaacagatctg	8	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50811751	A	A	50811751	3	1	9	1	0	0	0	0	1	0	0	0	4176	681	24	2	1059	2	CYLD	16	50811751	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77948	50811751	39543002	15496	23647											
SALL1	6299	broad.mit.edu	37	chr16	51171082	51171082	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaagcggaagttggttcCgttctcactgcttgccattt	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51171082	A	A	51171082	4	1	9	1	0	0	0	0	0	1	0	0	13921	661	23	1	62	1	SALL1	16	51171082	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	359331	51171082	39183671	15497	23648											
SALL1	6299	broad.mit.edu	37	chr16	51174686	51174686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtggagaacctgttccCgcagatgttgcacttgaatg	12	9	0	3	rs148915594		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51174686	A	A	51174686	3	1	9	1	0	0	0	0	1	0	0	0	13921	652	23	1	2535	1	SALL1	16	51174686	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3604	51174686	39180067	15498	23649											
SALL1	6299	broad.mit.edu	37	chr16	51174758	51174758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaggcactgtcactccCaaagaccttcgcgcagaacc	8	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51174758	A	A	51174758	3	1	9	1	0	0	0	0	1	0	0	0	13921	594	21	2	2607	2	SALL1	16	51174758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	51174758	39179995	15499	23650											
SALL1	6299	broad.mit.edu	37	chr16	51174933	51174933	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaagggctggggaaaacCgagttagcggaggcttgctg	18	7	0	0	rs79302764		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51174933	A	A	51174933	2	1	9	1	0	0	0	0	0	0	0	1	13921	639	23	1		1	SALL1	16	51174933	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	175	51174933	39179820	15500	23651											
SALL1	6299	broad.mit.edu	37	chr16	51175781	51175781	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactcttccctgtcaagtcCgttgtgttctgaaaggtcgc	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51175781	A	A	51175781	4	1	9	1	0	0	0	0	0	1	0	0	13921	661	23	1	3630	1	SALL1	16	51175781	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	848	51175781	39178972	15501	23652											
SALL1	6299	broad.mit.edu	37	chr16	51176013	51176013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccacagacgtgggcatcCttgctcttagtagggcgact	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51176013	A	A	51176013	3	1	9	1	0	0	0	0	1	0	0	0	13921	680	24	2	3862	2	SALL1	16	51176013	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	232	51176013	39178740	15502	23653											
SALL1	6299	broad.mit.edu	37	chr16	51176034	51176034	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgctcttagtagggcgactCggttgacccttttctgtgtc	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51176034	A	A	51176034	2	1	9	1	0	0	0	0	0	0	0	1	13921	871	31	3		3	SALL1	16	51176034	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	51176034	39178719	15503	23654											
CHD9	80205	broad.mit.edu	37	chr16	53190322	53190322	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgttctccaatccatccCcaaaaccaacccaatggttt	3	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53190322	A	A	53190322	2	1	9	1	0	0	0	0	0	0	0	1	3363	610	22	2		2	CHD9	16	53190322	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2014288	53190322	37164431	15504	23655											
CHD9	80205	broad.mit.edu	37	chr16	53283892	53283892	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttttctcctgtgtaccCgagctggtgggttgggcatc	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53283892	A	A	53283892	2	1	9	1	0	0	0	0	0	0	0	1	3363	644	23	1		1	CHD9	16	53283892	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	93570	53283892	37070861	15505	23656											
CHD9	80205	broad.mit.edu	37	chr16	53288413	53288413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtctacagactggtaactCgtaactcatatgagagagag	10	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53288413	A	A	53288413	3	1	9	1	0	0	0	0	1	0	0	0	3363	884	31	3	3991	3	CHD9	16	53288413	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4521	53288413	37066340	15506	23657											
CHD9	80205	broad.mit.edu	37	chr16	53301918	53301918	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgatgtagagataatttgcCgagctctcttagcatattgc	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53301918	A	A	53301918	2	1	9	1	0	0	0	0	0	0	0	1	3363	644	23	1		1	CHD9	16	53301918	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13505	53301918	37052835	15507	23658											
CHD9	80205	broad.mit.edu	37	chr16	53330838	53330838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaattttagtgactagtgtGgtttttttctttaatctgac	7	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53330838	T	T	53330838	1	4	9	0	1	0	0	0	0	0	0	0	3363	1363	47	2		2	CHD9	16	53330838	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28920	53330838	37023915	15508	23659											
CHD9	80205	broad.mit.edu	37	chr16	53331041	53331041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcattcatgtccatgtgtcGgagggtttgtcgtcttcctt	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53331041	T	T	53331041	3	4	9	1	0	0	0	0	1	0	0	0	3363	1116	39	1	5798	1	CHD9	16	53331041	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	203	53331041	37023712	15509	23660											
CHD9	80205	broad.mit.edu	37	chr16	53337850	53337850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattggtgctgccaaacacGgggtgagccgaacagactat	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53337850	T	T	53337850	3	4	9	1	0	0	0	0	1	0	0	0	3363	1116	39	1	6050	1	CHD9	16	53337850	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6809	53337850	37016903	15510	23661											
CHD9	80205	broad.mit.edu	37	chr16	53338265	53338265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacccctaactccaaaccCagcttctaagaaaccaagag	5	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53338265	A	A	53338265	3	1	9	1	0	0	0	0	1	0	0	0	3363	594	21	2	6465	2	CHD9	16	53338265	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	415	53338265	37016488	15511	23662											
RBL2	5934	broad.mit.edu	37	chr16	53504686	53504686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagcagctgtccgccttcGggatctctgtgccaaactag	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53504686	T	T	53504686	3	4	9	1	0	0	0	0	1	0	0	0	13218	1116	39	1	2621	1	RBL2	16	53504686	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	166421	53504686	36850067	15512	23663											
AKTIP	64400	broad.mit.edu	37	chr16	53529061	53529061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttggtaaagtccatgcCgtatgaatattactccaaac	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53529061	A	A	53529061	3	1	9	1	0	0	0	0	1	0	0	0	482	652	23	1	564	1	AKTIP	16	53529061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24375	53529061	36825692	15513	23664											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53726226	53726226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggggccgccaccaaccCgctcatatcttttcttgtca	8	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53726226	A	A	53726226	3	1	9	1	0	0	0	0	1	0	0	0	13661	652	23	1	3762	1	RPGRIP1L	16	53726226	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	197165	53726226	36628527	15514	23665											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53726256	53726256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttgtcattaactagcCgtattaacttggtggccatt	7	8	2	0	rs151212590	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53726256	A	A	53726256	3	1	9	1	0	0	0	0	1	0	0	0	13661	652	23	1	3792	1	RPGRIP1L	16	53726256	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	53726256	36628497	15515	23666											
FTO	79068	broad.mit.edu	37	chr16	53860432	53860432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcttggaaaaagcagccCtgtatgtaataatatgaccc	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53860432	A	A	53860432	1	1	9	0	1	0	0	0	0	0	0	0	6146	696	24	2		2	FTO	16	53860432	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	134176	53860432	36494321	15516	23667											
FTO	79068	broad.mit.edu	37	chr16	53907749	53907749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggccggttcacaacctcGgtttagttccacccaccgag	9	14	1	0	rs121918214		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53907749	T	T	53907749	3	4	9	1	0	0	0	0	1	0	0	0	6146	1116	39	1	965	1	FTO	16	53907749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47317	53907749	36447004	15517	23668											
FTO	79068	broad.mit.edu	37	chr16	54145694	54145694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgccagtcacgaattgcccGaacattacctgctgatcaga	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54145694	T	T	54145694	3	4	9	1	0	0	0	0	1	0	0	0	6146	1058	37	3	1419	3	FTO	16	54145694	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	237945	54145694	36209059	15518	23669											
FTO	79068	broad.mit.edu	37	chr16	54145754	54145754	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggaaaaggatgatgcttCgatgcctctgccgtttgacc	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54145754	A	A	54145754	4	1	9	1	0	0	0	0	0	1	0	0	6146	893	31	3	1479	3	FTO	16	54145754	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	54145754	36208999	15519	23670											
MMP2	4313	broad.mit.edu	37	chr16	55527232	55527232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagcttgcttcttgtcCtccttgtctcctgtcctctg	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55527232	A	A	55527232	1	1	9	0	1	0	0	0	0	0	0	0	9751	696	24	2		2	MMP2	16	55527232	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1381478	55527232	34827521	15520	23671											
CAPNS2	84290	broad.mit.edu	37	chr16	55601419	55601419	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccatgtattcctgaagtGggaactgagaagtcaagatc	11	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55601419	T	T	55601419	1	4	9	0	1	0	0	0	0	0	0	0	2660	1363	47	2		2	CAPNS2	16	55601419	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	74187	55601419	34753334	15521	23672											
SLC6A2	6530	broad.mit.edu	37	chr16	55732380	55732380	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttctctccctgtgccaGggtggaatttacgtcttgac	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55732380	T	T	55732380	5	4	9	1	0	0	0	0	0	0	1	0	14797	1014	35	2	1518	2	SLC6A2	16	55732380	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	130961	55732380	34622373	15522	23673											
GNAO1	2775	broad.mit.edu	37	chr16	56374870	56374870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagatcaagaagtcccCgctcaccatctgctttcctg	8	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56374870	A	A	56374870	3	1	9	1	0	0	0	0	1	0	0	0	6572	652	23	1	874	1	GNAO1	16	56374870	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	642490	56374870	33979883	15523	23674											
AMFR	267	broad.mit.edu	37	chr16	56396327	56396327	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggggtgcatgagcccgtGggtctggcctctggcacagt	16	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56396327	T	T	56396327	1	4	9	0	1	0	0	0	0	0	0	0	571	1363	47	2		2	AMFR	16	56396327	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	21457	56396327	33958426	15524	23675											
AMFR	267	broad.mit.edu	37	chr16	56397754	56397754	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttggcatctgtttaaaaaGagaagacggcctgacaacgg	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56397754	C	C	56397754	1	2	9	0	1	0	0	0	0	0	0	0	571	957	33	4		4	AMFR	16	56397754	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1427	56397754	33956999	15525	23676											
AMFR	267	broad.mit.edu	37	chr16	56401347	56401347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcactctcactagagtgcGggttttacctgagcagaagt	10	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56401347	T	T	56401347	1	4	9	0	1	0	0	0	0	0	0	0	571	1131	39	1		1	AMFR	16	56401347	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3593	56401347	33953406	15526	23677											
NUDT21	11051	broad.mit.edu	37	chr16	56473536	56473536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacgagctttctgcttcCaaaatgcccagcaaatgtaa	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56473536	A	A	56473536	1	1	9	0	1	0	0	0	0	0	0	0	10833	609	21	2		2	NUDT21	16	56473536	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	72189	56473536	33881217	15527	23678											
OGFOD1	55239	broad.mit.edu	37	chr16	56501026	56501026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattaatgtgcattggcGgtaatccccctattcttcgt	8	9	1	1	rs145466653	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56501026	T	T	56501026	1	4	9	0	1	0	0	0	0	0	0	0	10936	1131	39	1		1	OGFOD1	16	56501026	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	27490	56501026	33853727	15528	23679											
OGFOD1	55239	broad.mit.edu	37	chr16	56501061	56501061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgtgttgatgtgctactGggcttctcctttcaggtgtc	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56501061	T	T	56501061	1	4	9	0	1	0	0	0	0	0	0	0	10936	1363	47	2		2	OGFOD1	16	56501061	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35	56501061	33853692	15529	23680											
OGFOD1	55239	broad.mit.edu	37	chr16	56501149	56501149	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcatggtccatcattgactCggcctcccaactactttgaa	6	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56501149	A	A	56501149	2	1	9	1	0	0	0	0	0	0	0	1	10936	875	31	3		3	OGFOD1	16	56501149	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	56501149	33853604	15530	23681											
OGFOD1	55239	broad.mit.edu	37	chr16	56508898	56508898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcggtggattattcccCgtaggaggggcagtctcttc	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56508898	A	A	56508898	1	1	9	0	1	0	0	0	0	0	0	0	10936	667	23	1		1	OGFOD1	16	56508898	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7749	56508898	33845855	15531	23682											
BBS2	583	broad.mit.edu	37	chr16	56533700	56533700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatactcaccctctgtgccCgttctgcaatggtaaagtta	8	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56533700	A	A	56533700	3	1	9	1	0	0	0	0	1	0	0	0	1343	652	23	1	672	1	BBS2	16	56533700	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24802	56533700	33821053	15532	23683											
MT1G	4495	broad.mit.edu	37	chr16	56701215	56701215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattcctggagatggcccCgcactcactcttcttgcagg	10	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701215	A	A	56701215	1	1	9	0	1	0	0	0	0	0	0	0	9995	667	23	1		1	MT1G	16	56701215	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	167515	56701215	33653538	15533	23684											
MT1H	4496	broad.mit.edu	37	chr16	56703838	56703838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctggtaaggaacgcccGggttctgtgccttaggatgc	16	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56703838	T	T	56703838	1	4	9	0	1	0	0	0	0	0	0	0	9996	1131	39	1		1	MT1H	16	56703838	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2623	56703838	33650915	15534	23685											
MT1X	4501	broad.mit.edu	37	chr16	56716425	56716425	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgttttcctcttgatcGggaactcctgcttctccttg	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56716425	T	T	56716425	1	4	9	0	1	0	0	0	0	0	0	0	9998	1131	39	1		1	MT1X	16	56716425	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	12587	56716425	33638328	15535	23686											
MT1X	4501	broad.mit.edu	37	chr16	56717794	56717794	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggctggaggcagggctcGagccaggcctctgttggggc	20	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56717794	T	T	56717794	1	4	9	0	1	0	0	0	0	0	0	0	9998	1073	37	3		3	MT1X	16	56717794	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1369	56717794	33636959	15536	23687											
NUP93	9688	broad.mit.edu	37	chr16	56863059	56863059	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgatcagttacaccccCagagcagttgccctcagatg	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56863059	A	A	56863059	1	1	9	0	1	0	0	0	0	0	0	0	10867	609	21	2		2	NUP93	16	56863059	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145265	56863059	33491694	15537	23688											
NUP93	9688	broad.mit.edu	37	chr16	56865889	56865889	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaccagagtgaagtggcGgacaaaactgaggattacct	12	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56865889	T	T	56865889	2	4	9	1	0	0	0	0	0	0	0	1	10867	1103	39	1		1	NUP93	16	56865889	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2830	56865889	33488864	15538	23689											
NUP93	9688	broad.mit.edu	37	chr16	56865978	56865978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttctgtgctcaagtcccCgcaaagattttacctgctta	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56865978	A	A	56865978	1	1	9	0	1	0	0	0	0	0	0	0	10867	667	23	1		1	NUP93	16	56865978	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	89	56865978	33488775	15539	23690											
SLC12A3	6559	broad.mit.edu	37	chr16	56926002	56926002	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttttgcagttaacccCgtgtttgacccagcggagga	10	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56926002	A	A	56926002	2	1	9	1	0	0	0	0	0	0	0	1	14497	639	23	1		1	SLC12A3	16	56926002	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	60024	56926002	33428751	15540	23691											
HERPUD1	9709	broad.mit.edu	37	chr16	56974156	56974156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccgttgttatgtacCtgtaagcagatggtttctct	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56974156	A	A	56974156	3	1	9	1	0	0	0	0	1	0	0	0	7130	695	24	2	926	2	HERPUD1	16	56974156	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48154	56974156	33380597	15541	23692											
HERPUD1	9709	broad.mit.edu	37	chr16	56977186	56977186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttccagaaggcccccCagccatcgcaaactgatggt	8	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56977186	A	A	56977186	3	1	9	1	0	0	0	0	1	0	0	0	7130	594	21	2	1190	2	HERPUD1	16	56977186	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3030	56977186	33377567	15542	23693											
CETP	1071	broad.mit.edu	37	chr16	57005959	57005959	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccctgacaggtgatccCgtcatcacagcctcctacct	6	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57005959	A	A	57005959	2	1	9	1	0	0	0	0	0	0	0	1	3307	639	23	1		1	CETP	16	57005959	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28773	57005959	33348794	15543	23694											
NLRC5	84166	broad.mit.edu	37	chr16	57060012	57060012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagcgcccagccatcgcGggagggggccctggtggagt	17	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57060012	T	T	57060012	3	4	9	1	0	0	0	0	1	0	0	0	10565	1116	39	1	1171	1	NLRC5	16	57060012	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54053	57060012	33294741	15544	23695											
NLRC5	84166	broad.mit.edu	37	chr16	57065344	57065344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcatcttccttctttccCcgcccacagagacaactgca	4	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57065344	A	A	57065344	3	1	9	1	0	0	0	0	1	0	0	0	10565	623	22	2	2480	2	NLRC5	16	57065344	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5332	57065344	33289409	15545	23696											
NLRC5	84166	broad.mit.edu	37	chr16	57088686	57088686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccagacgggactgtcccCgaaaagccccttcctgctgg	12	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57088686	A	A	57088686	3	1	9	1	0	0	0	0	1	0	0	0	10565	652	23	1	3620	1	NLRC5	16	57088686	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23342	57088686	33266067	15546	23697											
NLRC5	84166	broad.mit.edu	37	chr16	57088731	57088731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttaagcctgtgtccacGggttaaaaaggtggatctca	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57088731	T	T	57088731	3	4	9	1	0	0	0	0	1	0	0	0	10565	1116	39	1	3665	1	NLRC5	16	57088731	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	57088731	33266022	15547	23698											
CPNE2	221184	broad.mit.edu	37	chr16	57147238	57147238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgatcaacaacctcaacccCgccttctccaagaagttcgt	6	16	3	1	rs138897886		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57147238	A	A	57147238	2	1	9	1	0	0	0	0	0	0	0	1	3844	639	23	1		1	CPNE2	16	57147238	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58507	57147238	33207515	15548	23699											
CPNE2	221184	broad.mit.edu	37	chr16	57155644	57155644	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagaagaactataaaaactCgggcatcatcatcctgcgat	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57155644	A	A	57155644	4	1	9	1	0	0	0	0	0	1	0	0	3844	893	31	3	869	3	CPNE2	16	57155644	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8406	57155644	33199109	15549	23700											
RSPRY1	89970	broad.mit.edu	37	chr16	57238603	57238603	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttgggccgtgttcttagcGagcagaagccttggccaggg	17	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57238603	T	T	57238603	2	4	9	1	0	0	0	0	0	0	0	1	13824	1045	37	3		3	RSPRY1	16	57238603	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	82959	57238603	33116150	15550	23701											
RSPRY1	89970	broad.mit.edu	37	chr16	57238639	57238639	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagggtctgttgttgactctCgaagagcacatagcccactt	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57238639	A	A	57238639	2	1	9	1	0	0	0	0	0	0	0	1	13824	871	31	3		3	RSPRY1	16	57238639	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	57238639	33116114	15551	23702											
RSPRY1	89970	broad.mit.edu	37	chr16	57241985	57241985	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtgatcaggaacctccCtattcaatgataacattaca	5	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57241985	A	A	57241985	2	1	9	1	0	0	0	0	0	0	0	1	13824	668	24	2		2	RSPRY1	16	57241985	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3346	57241985	33112768	15552	23703											
RSPRY1	89970	broad.mit.edu	37	chr16	57243093	57243093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagatgaatgtccattgccCactaaagtaagttaatactt	6	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57243093	A	A	57243093	2	1	9	1	0	0	0	0	0	0	0	1	13824	581	21	2		2	RSPRY1	16	57243093	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1108	57243093	33111660	15553	23704											
ARL2BP	23568	broad.mit.edu	37	chr16	57283722	57283722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaacagctgctgcagcGgattcctgagttcaacatgg	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57283722	T	T	57283722	3	4	9	1	0	0	0	0	1	0	0	0	938	1116	39	1	265	1	ARL2BP	16	57283722	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40629	57283722	33071031	15554	23705											
CIAPIN1	57019	broad.mit.edu	37	chr16	57473151	57473151	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccaggccgaaggatccGggcgatttcagccaaaatct	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57473151	T	T	57473151	2	4	9	1	0	0	0	0	0	0	0	1	3450	1115	39	1		1	CIAPIN1	16	57473151	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	189429	57473151	32881602	15555	23706											
COQ9	57017	broad.mit.edu	37	chr16	57490421	57490421	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccccttttgtagtctctGggtctctccagtgcagcagc	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57490421	T	T	57490421	2	4	9	1	0	0	0	0	0	0	0	1	3783	1335	47	2		2	COQ9	16	57490421	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	17270	57490421	32864332	15556	23707											
POLR2C	5432	broad.mit.edu	37	chr16	57500138	57500138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaagctgcagtactctcGggtatgttgtgtgattgggt	15	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57500138	T	T	57500138	3	4	9	1	0	0	0	0	1	0	0	0	12311	1130	39	1	271	1	POLR2C	16	57500138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9717	57500138	32854615	15557	23708											
POLR2C	5432	broad.mit.edu	37	chr16	57504902	57504902	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaggttttactacaatgtGgagtcctgtggctctctgcg	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57504902	T	T	57504902	2	4	9	1	0	0	0	0	0	0	0	1	12311	1335	47	2		2	POLR2C	16	57504902	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4764	57504902	32849851	15558	23709											
GPR114	221188	broad.mit.edu	37	chr16	57595896	57595896	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgctgcatgtcctactcttGggacatgccagacacctaga	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57595896	C	C	57595896	1	2	9	0	1	0	0	0	0	0	0	0	6696	1363	47	4		4	GPR114	16	57595896	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	90994	57595896	32758857	15559	23710											
GPR114	221188	broad.mit.edu	37	chr16	57597804	57597804	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacgccatgcagttcccCgccgagctgacccgggacgc	12	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57597804	A	A	57597804	2	1	9	1	0	0	0	0	0	0	0	1	6696	639	23	1		1	GPR114	16	57597804	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1908	57597804	32756949	15560	23711											
GPR114	221188	broad.mit.edu	37	chr16	57601877	57601877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcaatgtctcctgtgcccGggtcagcatgcacggctctg	12	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57601877	T	T	57601877	3	4	9	1	0	0	0	0	1	0	0	0	6696	1116	39	1	961	1	GPR114	16	57601877	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4073	57601877	32752876	15561	23712											
GPR56	9289	broad.mit.edu	37	chr16	57689353	57689353	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtactcggtgctgctgcctCgaacactcttccagaggacg	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57689353	A	A	57689353	2	1	9	1	0	0	0	0	0	0	0	1	6765	876	31	3		3	GPR56	16	57689353	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87476	57689353	32665400	15562	23713											
CCDC135	84229	broad.mit.edu	37	chr16	57752276	57752276	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacttgatctttgacctGggtgaccctgtgagatggga	14	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57752276	T	T	57752276	2	4	9	1	0	0	0	0	0	0	0	1	2795	1335	47	2		2	CCDC135	16	57752276	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	62923	57752276	32602477	15563	23714											
KATNB1	10300	broad.mit.edu	37	chr16	57778386	57778386	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgtggccggctctcagtcGggctccatccgtgtctggga	14	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57778386	T	T	57778386	2	4	9	1	0	0	0	0	0	0	0	1	8057	1103	39	1		1	KATNB1	16	57778386	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	26110	57778386	32576367	15564	23715											
KATNB1	10300	broad.mit.edu	37	chr16	57784861	57784861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaggccggtccgtgcccCgtgtctcctgctgggcctgt	15	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57784861	A	A	57784861	1	1	9	0	1	0	0	0	0	0	0	0	8057	667	23	1		1	KATNB1	16	57784861	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6475	57784861	32569892	15565	23716											
KATNB1	10300	broad.mit.edu	37	chr16	57784895	57784895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgtggcaggaccagccCggcccggccctcagtgctgg	16	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57784895	A	A	57784895	1	1	9	0	1	0	0	0	0	0	0	0	8057	667	23	1		1	KATNB1	16	57784895	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	34	57784895	32569858	15566	23717											
KATNB1	10300	broad.mit.edu	37	chr16	57785630	57785630	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggccgcagatgaccacacCgtgaaggtagctcccggcct	12	15	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57785630	A	A	57785630	2	1	9	1	0	0	0	0	0	0	0	1	8057	639	23	1		1	KATNB1	16	57785630	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	735	57785630	32569123	15567	23718											
KIFC3	3801	broad.mit.edu	37	chr16	57795398	57795398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctgcccactgccgtctGggcacagccggatctccagt	11	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57795398	T	T	57795398	3	4	9	1	0	0	0	0	1	0	0	0	8384	1348	47	2	735	2	KIFC3	16	57795398	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9768	57795398	32559355	15568	23719											
KIFC3	3801	broad.mit.edu	37	chr16	57796151	57796151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagagcagctgcagggccCgctggttgatacctgggttc	15	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57796151	A	A	57796151	3	1	9	1	0	0	0	0	1	0	0	0	8384	652	23	1	889	1	KIFC3	16	57796151	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	753	57796151	32558602	15569	23720											
ZNF319	57567	broad.mit.edu	37	chr16	58031555	58031555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagggcttttggcagatGgggcagctgtagggcttgtc	17	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58031555	T	T	58031555	2	4	9	1	0	0	0	0	0	0	0	1	17963	1335	47	2		2	ZNF319	16	58031555	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	235404	58031555	32323198	15570	23721											
C16orf57	79650	broad.mit.edu	37	chr16	58051275	58051275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcacttcagggcatgccCagttcctggacctggtttca	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58051275	A	A	58051275	3	1	9	1	0	0	0	0	1	0	0	0	1835	595	21	2	559	2	C16orf57	16	58051275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19720	58051275	32303478	15571	23722											
CSNK2A2	1459	broad.mit.edu	37	chr16	58200449	58200449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctttccacttctgaaacGgggtaaggtaaagcactctc	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58200449	T	T	58200449	1	4	9	0	1	0	0	0	0	0	0	0	3992	1131	39	1		1	CSNK2A2	16	58200449	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	149174	58200449	32154304	15572	23723											
NDRG4	65009	broad.mit.edu	37	chr16	58542891	58542891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaactccaaactggaccCgaccactacgaccttcctga	7	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58542891	A	A	58542891	3	1	9	1	0	0	0	0	1	0	0	0	10349	652	23	1	961	1	NDRG4	16	58542891	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	342442	58542891	31811862	15573	23724											
CNOT1	23019	broad.mit.edu	37	chr16	58577516	58577516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatagccaacttacacgaaGggctgaggcaaaactgtttt	9	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58577516	T	T	58577516	3	4	9	1	0	0	0	0	1	0	0	0	3649	1000	35	2	2999	2	CNOT1	16	58577516	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34625	58577516	31777237	15574	23725											
CNOT1	23019	broad.mit.edu	37	chr16	58581158	58581158	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagagcaattcttgttgtcCtttaacataagcctctagca	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58581158	A	A	58581158	4	1	9	1	0	0	0	0	0	1	0	0	3649	690	24	2	3762	2	CNOT1	16	58581158	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3642	58581158	31773595	15575	23726											
CNOT1	23019	broad.mit.edu	37	chr16	58617045	58617045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcagctgtgacctccCgaacaccaaactgcacgatt	9	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58617045	A	A	58617045	3	1	9	1	0	0	0	0	1	0	0	0	3649	652	23	1	6668	1	CNOT1	16	58617045	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35887	58617045	31737708	15576	23727											
GOT2	2806	broad.mit.edu	37	chr16	58743366	58743366	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaacatgccaatttggtcGgtgatgtgttgccaattgtg	12	7	0	2	rs115659765	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58743366	T	T	58743366	2	4	9	1	0	0	0	0	0	0	0	1	6645	1103	39	1		1	GOT2	16	58743366	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	126321	58743366	31611387	15577	23728											
GOT2	2806	broad.mit.edu	37	chr16	58757793	58757793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtcccatttccacatGggtccaccaggagctgaaat	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58757793	T	T	58757793	3	4	9	1	0	0	0	0	1	0	0	0	6645	1348	47	2	1225	2	GOT2	16	58757793	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14427	58757793	31596960	15578	23729											
CDH11	1009	broad.mit.edu	37	chr16	65015957	65015957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatccgtctgtaccttatcGggctgttggcagcatcaggg	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65015957	T	T	65015957	3	4	9	1	0	0	0	0	1	0	0	0	3127	1116	39	1	1167	1	CDH11	16	65015957	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6258164	65015957	25338796	15579	23730											
CDH11	1009	broad.mit.edu	37	chr16	65016048	65016048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttcgtggatgtaacttgGggccaagaacatagggggct	15	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65016048	T	T	65016048	3	4	9	1	0	0	0	0	1	0	0	0	3127	1232	43	2	1258	2	CDH11	16	65016048	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	65016048	25338705	15580	23731											
CDH5	1003	broad.mit.edu	37	chr16	66432001	66432001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtgtgagaacgctgtcCatggccaggtgagtctggtt	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66432001	A	A	66432001	3	1	9	1	0	0	0	0	1	0	0	0	3143	594	21	2	1507	2	CDH5	16	66432001	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1415953	66432001	23922752	15581	23732											
CDH5	1003	broad.mit.edu	37	chr16	66434744	66434744	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaggtccacttcctaccCgtggtcatctcagacaatgg	8	14	2	1	rs141080144	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66434744	A	A	66434744	2	1	9	1	0	0	0	0	0	0	0	1	3143	639	23	1		1	CDH5	16	66434744	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2743	66434744	23920009	15582	23733											
TK2	7084	broad.mit.edu	37	chr16	66570912	66570912	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacttggacacaggctcCgttaacacctggaaggaaag	10	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66570912	A	A	66570912	2	1	9	1	0	0	0	0	0	0	0	1	16056	639	23	1		1	TK2	16	66570912	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	136168	66570912	23783841	15583	23734											
CKLF	51192	broad.mit.edu	37	chr16	66592176	66592176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactggatttgaagtcacCgttatcttatttttcatact	5	8	4	1	rs112815434		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66592176	A	A	66592176	2	1	9	1	0	0	0	0	0	0	0	1	3478	639	23	1		1	CKLF	16	66592176	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21264	66592176	23762577	15584	23735											
CMTM1	113540	broad.mit.edu	37	chr16	66612820	66612820	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaacttgaaaagattcctGggagtcgaagttgaaaggaa	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66612820	T	T	66612820	2	4	9	1	0	0	0	0	0	0	0	1	3614	1335	47	2		2	CMTM1	16	66612820	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20644	66612820	23741933	15585	23736											
NAE1	8883	broad.mit.edu	37	chr16	66842465	66842465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaaatctatcaacagccCgtaacattaagtacaacact	4	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66842465	A	A	66842465	3	1	9	1	0	0	0	0	1	0	0	0	10233	652	23	1	331	1	NAE1	16	66842465	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	229645	66842465	23512288	15586	23737											
NAE1	8883	broad.mit.edu	37	chr16	66842957	66842957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggatcgacatcttaccactCgaagaaatgcagaattgctg	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66842957	A	A	66842957	3	1	9	1	0	0	0	0	1	0	0	0	10233	884	31	3	452	3	NAE1	16	66842957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	492	66842957	23511796	15587	23738											
CDH16	1014	broad.mit.edu	37	chr16	66947168	66947168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccatgggaattctgagccCgcacctggagcaggtactgc	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66947168	A	A	66947168	3	1	9	1	0	0	0	0	1	0	0	0	3131	652	23	1	1609	1	CDH16	16	66947168	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104211	66947168	23407585	15588	23739											
RRAD	6236	broad.mit.edu	37	chr16	66957790	66957790	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgagtgatgcctcttctcCgtccactacaatggagcgat	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66957790	G	G	66957790	3	3	9	1	0	0	0	0	1	0	0	0	13782	661	23	4	535	4	RRAD	16	66957790	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10622	66957790	23396963	15589	23740											
CES3	23491	broad.mit.edu	37	chr16	67006353	67006353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggctgatcatggggcCgagggtgcttttgtgttcgg	18	6	1	2	rs71649612		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67006353	A	A	67006353	2	1	9	1	0	0	0	0	0	0	0	1	3301	639	23	1		1	CES3	16	67006353	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48563	67006353	23348400	15590	23741											
C16orf70	80262	broad.mit.edu	37	chr16	67159904	67159904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaacctgactcaggacGggatcaaactaatgtttgat	8	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67159904	T	T	67159904	3	4	9	1	0	0	0	0	1	0	0	0	1843	1116	39	1	200	1	C16orf70	16	67159904	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	153551	67159904	23194849	15591	23742											
C16orf70	80262	broad.mit.edu	37	chr16	67166419	67166419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagtcttttggcgcaaccCatcctggaggtaagccaagt	10	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67166419	A	A	67166419	3	1	9	1	0	0	0	0	1	0	0	0	1843	594	21	2	364	2	C16orf70	16	67166419	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6515	67166419	23188334	15592	23743											
EXOC3L	283849	broad.mit.edu	37	chr16	67220845	67220845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgaccctgctggagatGggtagacattccactctgca	11	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67220845	T	T	67220845	1	4	9	0	1	0	0	0	0	0	0	0	5346	1363	47	2		2	EXOC3L	16	67220845	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	54426	67220845	23133908	15593	23744											
EXOC3L	283849	broad.mit.edu	37	chr16	67220921	67220921	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacctgtgcctcaactactCacctggatgttggccacaaa	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67220921	A	A	67220921	1	1	9	0	1	0	0	0	0	0	0	0	5346	841	29	3		3	EXOC3L	16	67220921	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	76	67220921	23133832	15594	23745											
EXOC3L	283849	broad.mit.edu	37	chr16	67221668	67221668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcagctgctccagctccCgaaggctcacatatgcctcc	8	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67221668	A	A	67221668	3	1	9	1	0	0	0	0	1	0	0	0	5346	652	23	1	1780	1	EXOC3L	16	67221668	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	747	67221668	23133085	15595	23746											
ELMO3	79767	broad.mit.edu	37	chr16	67236061	67236061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagctgtgactccttgcccCattctctgcgcccccagttt	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67236061	A	A	67236061	1	1	9	0	1	0	0	0	0	0	0	0	5109	609	21	2		2	ELMO3	16	67236061	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14393	67236061	23118692	15596	23747											
TMEM208	29100	broad.mit.edu	37	chr16	67261089	67261089	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggtttcggtcgctctccCgtgtttcccgggctgggtat	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67261089	A	A	67261089	1	1	9	0	1	0	0	0	0	0	0	0	16256	667	23	1		1	TMEM208	16	67261089	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	25028	67261089	23093664	15597	23748											
TMEM208	29100	broad.mit.edu	37	chr16	67261148	67261148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggaggatggatagggcGgggtccgcaccagcaaagct	17	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67261148	T	T	67261148	1	4	9	0	1	0	0	0	0	0	0	0	16256	1131	39	1		1	TMEM208	16	67261148	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	59	67261148	23093605	15598	23749											
FHOD1	29109	broad.mit.edu	37	chr16	67264488	67264488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccgtcctgcctctcttGggtccatgcccctacctatt	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67264488	T	T	67264488	1	4	9	0	1	0	0	0	0	0	0	0	5939	1363	47	2		2	FHOD1	16	67264488	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3340	67264488	23090265	15599	23750											
PLEKHG4	25894	broad.mit.edu	37	chr16	67319354	67319354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaacctggagaagctgcGggacttccactgccacttct	11	13	1	1	rs150434910		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67319354	T	T	67319354	3	4	9	1	0	0	0	0	1	0	0	0	12166	1116	39	1	2407	1	PLEKHG4	16	67319354	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54866	67319354	23035399	15600	23751											
PLEKHG4	25894	broad.mit.edu	37	chr16	67321999	67321999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctccattagtgctggccCgcactttccttgggatctgg	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67321999	A	A	67321999	1	1	9	0	1	0	0	0	0	0	0	0	12166	667	23	1		1	PLEKHG4	16	67321999	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2645	67321999	23032754	15601	23752											
KCTD19	146212	broad.mit.edu	37	chr16	67333438	67333438	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtgcgggcccccttccCggggctcaggggagaacagg	18	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67333438	G	G	67333438	3	3	9	1	0	0	0	0	1	0	0	0	8176	652	23	4	2010	4	KCTD19	16	67333438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11439	67333438	23021315	15602	23753											
LRRC36	55282	broad.mit.edu	37	chr16	67401128	67401128	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctagccagatccatccCtatcagttaccttcagatgt	6	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67401128	A	A	67401128	2	1	9	1	0	0	0	0	0	0	0	1	9077	668	24	2		2	LRRC36	16	67401128	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	67690	67401128	22953625	15603	23754											
TPPP3	51673	broad.mit.edu	37	chr16	67424489	67424489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtcgccagctcttccaGggccttcttgaactcctcat	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67424489	T	T	67424489	3	4	9	1	0	0	0	0	1	0	0	0	16539	991	35	2	303	2	TPPP3	16	67424489	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23361	67424489	22930264	15604	23755											
TPPP3	51673	broad.mit.edu	37	chr16	67424521	67424521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctcatagttgatgaccCgagcagacttccccctgaca	7	15	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67424521	A	A	67424521	3	1	9	1	0	0	0	0	1	0	0	0	16539	652	23	1	335	1	TPPP3	16	67424521	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	67424521	22930232	15605	23756											
HSD11B2	3291	broad.mit.edu	37	chr16	67470174	67470174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgccatatccgtgcttGggggcctatggaacctccaa	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67470174	T	T	67470174	3	4	9	1	0	0	0	0	1	0	0	0	7444	1339	47	2	701	2	HSD11B2	16	67470174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45653	67470174	22884579	15606	23757											
ATP6V0D1	9114	broad.mit.edu	37	chr16	67472953	67472953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggccctcagggtagagcCgcccacagtgtggaaagagc	14	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67472953	A	A	67472953	3	1	9	1	0	0	0	0	1	0	0	0	1177	652	23	1	330	1	ATP6V0D1	16	67472953	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2779	67472953	22881800	15607	23758											
FAM65A	79567	broad.mit.edu	37	chr16	67576633	67576633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctacccccagtggtatGggcctagtccagactgccac	10	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67576633	T	T	67576633	3	4	9	1	0	0	0	0	1	0	0	0	5650	1348	47	2	1990	2	FAM65A	16	67576633	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	103680	67576633	22778120	15608	23759											
FAM65A	79567	broad.mit.edu	37	chr16	67578753	67578753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaaggccctgggggttcGggctctgccatctgccttga	15	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67578753	T	T	67578753	1	4	9	0	1	0	0	0	0	0	0	0	5650	1131	39	1		1	FAM65A	16	67578753	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2120	67578753	22776000	15609	23760											
C16orf48	84080	broad.mit.edu	37	chr16	67697237	67697237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggcctacagggggccCgggaacagtgagaacagtga	16	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67697237	A	A	67697237	1	1	9	0	1	0	0	0	0	0	0	0	1830	667	23	1		1	C16orf48	16	67697237	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	118484	67697237	22657516	15610	23761											
GFOD2	81577	broad.mit.edu	37	chr16	67709144	67709144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacagcctcccactcccCggatcggctcgacctcttga	7	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67709144	A	A	67709144	3	1	9	1	0	0	0	0	1	0	0	0	6408	652	23	1	89	1	GFOD2	16	67709144	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11907	67709144	22645609	15611	23762											
RANBP10	57610	broad.mit.edu	37	chr16	67765413	67765413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcctgttcttcctgaatcGgggtttcagtcattcgagca	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67765413	T	T	67765413	3	4	9	1	0	0	0	0	1	0	0	0	13134	1116	39	1	1043	1	RANBP10	16	67765413	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56269	67765413	22589340	15612	23763											
RANBP10	57610	broad.mit.edu	37	chr16	67778300	67778300	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatagggctggccagtcccCgaggagcagaacgaatgccc	13	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67778300	A	A	67778300	2	1	9	1	0	0	0	0	0	0	0	1	13134	639	23	1		1	RANBP10	16	67778300	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12887	67778300	22576453	15613	23764											
RANBP10	57610	broad.mit.edu	37	chr16	67805983	67805983	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagccgagagtcctattccCatgtaacttcaaaaaaaaaa	6	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67805983	G	G	67805983	3	3	9	1	0	0	0	0	1	0	0	0	13134	594	21	4	1556	4	RANBP10	16	67805983	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27683	67805983	22548770	15614	23765											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67861340	67861340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttggctggaccctaccCaatgtgccctccccctgact	8	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67861340	A	A	67861340	1	1	9	0	1	0	0	0	0	0	0	0	16757	609	21	2		2	TSNAXIP1	16	67861340	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55357	67861340	22493413	15615	23766											
CENPT	80152	broad.mit.edu	37	chr16	67862496	67862496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaggctgtcaagaaggtgGggatagagcaggctgaacag	16	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67862496	T	T	67862496	1	4	9	0	1	0	0	0	0	0	0	0	3272	1247	43	2		2	CENPT	16	67862496	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1156	67862496	22492257	15616	23767											
CENPT	80152	broad.mit.edu	37	chr16	67862602	67862602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcaagagccttcctctcCatgggcatcttggcatagaa	8	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67862602	A	A	67862602	3	1	9	1	0	0	0	0	1	0	0	0	3272	594	21	2	272	2	CENPT	16	67862602	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	67862602	22492151	15617	23768											
CENPT	80152	broad.mit.edu	37	chr16	67863789	67863789	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcctcttctaccctgctGggtccttgtgctcctgttgc	9	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67863789	T	T	67863789	2	4	9	1	0	0	0	0	0	0	0	1	3272	1335	47	2		2	CENPT	16	67863789	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1187	67863789	22490964	15618	23769											
NUTF2	10204	broad.mit.edu	37	chr16	67902387	67902387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttggttctcccacctccCactctctctcttgtagagcc	6	18	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67902387	A	A	67902387	1	1	9	0	1	0	0	0	0	0	0	0	10874	609	21	2		2	NUTF2	16	67902387	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38598	67902387	22452366	15619	23770											
NUTF2	10204	broad.mit.edu	37	chr16	67902411	67902411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctcttgtagagccttcCgttccagaaaattcagcaca	6	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67902411	A	A	67902411	3	1	9	1	0	0	0	0	1	0	0	0	10874	652	23	1	189	1	NUTF2	16	67902411	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	67902411	22452342	15620	23771											
PSKH1	5681	broad.mit.edu	37	chr16	67961297	67961297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacagtggaccctggagccCgtatgactgcactgcaggcc	13	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67961297	A	A	67961297	3	1	9	1	0	0	0	0	1	0	0	0	12770	652	23	1	1033	1	PSKH1	16	67961297	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58886	67961297	22393456	15621	23772											
DPEP3	64180	broad.mit.edu	37	chr16	68010018	68010018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccacttgtctgaagaccCgcagcaggtttccacgaagg	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68010018	A	A	68010018	3	1	9	1	0	0	0	0	1	0	0	0	4755	652	23	1	266	1	DPEP3	16	68010018	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48721	68010018	22344735	15622	23773											
DPEP2	64174	broad.mit.edu	37	chr16	68021724	68021724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatacacttgctcagacccCtcggctactctcttgcccag	7	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68021724	A	A	68021724	1	1	9	0	1	0	0	0	0	0	0	0	4754	696	24	2		2	DPEP2	16	68021724	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11706	68021724	22333029	15623	23774											
DUS2L	54920	broad.mit.edu	37	chr16	68071988	68071988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcctggccccaatggttcGggtagggactcttccaatga	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68071988	T	T	68071988	3	4	9	1	0	0	0	0	1	0	0	0	4846	1116	39	1	64	1	DUS2L	16	68071988	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50264	68071988	22282765	15624	23775											
DUS2L	54920	broad.mit.edu	37	chr16	68100173	68100173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtacaggcagagtgatGgtttgttccagaagacatag	12	5	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68100173	T	T	68100173	1	4	9	0	1	0	0	0	0	0	0	0	4846	1363	47	2		2	DUS2L	16	68100173	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28185	68100173	22254580	15625	23776											
DUS2L	54920	broad.mit.edu	37	chr16	68104042	68104042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctatctccaaggaagcGggaggagcgacctcagcatc	11	12	3	0	rs144033792	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68104042	T	T	68104042	3	4	9	1	0	0	0	0	1	0	0	0	4846	1116	39	1	594	1	DUS2L	16	68104042	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3869	68104042	22250711	15626	23777											
NFATC3	4775	broad.mit.edu	37	chr16	68156199	68156199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagataaatgacccagaacGggaatttttggaaaggcctt	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68156199	T	T	68156199	3	4	9	1	0	0	0	0	1	0	0	0	10459	1116	39	1	419	1	NFATC3	16	68156199	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52157	68156199	22198554	15627	23778											
NFATC3	4775	broad.mit.edu	37	chr16	68208283	68208283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttaaaacagcccagcGgtctgctcaagaacttcctc	6	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68208283	T	T	68208283	3	4	9	1	0	0	0	0	1	0	0	0	10459	1116	39	1	1803	1	NFATC3	16	68208283	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52084	68208283	22146470	15628	23779											
SLC7A6	9057	broad.mit.edu	37	chr16	68325091	68325091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttggttctaggtagtcCtttctcacttgtcctgacag	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68325091	A	A	68325091	1	1	9	0	1	0	0	0	0	0	0	0	14815	696	24	2		2	SLC7A6	16	68325091	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	116808	68325091	22029662	15629	23780											
PRMT7	54496	broad.mit.edu	37	chr16	68379582	68379582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctccgtttcagtggcGggaccactggatgcagtgtg	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68379582	T	T	68379582	3	4	9	1	0	0	0	0	1	0	0	0	12647	1116	39	1	962	1	PRMT7	16	68379582	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54491	68379582	21975171	15630	23781											
SMPD3	55512	broad.mit.edu	37	chr16	68404917	68404917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctggcagccgtagacccCgacgtcgtacaggatgtact	12	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68404917	A	A	68404917	3	1	9	1	0	0	0	0	1	0	0	0	14920	652	23	1	827	1	SMPD3	16	68404917	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25335	68404917	21949836	15631	23782											
CDH3	1001	broad.mit.edu	37	chr16	68718519	68718519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaaaaaccagcacaccCtgtacgttgaagtgaccaac	8	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68718519	A	A	68718519	3	1	9	1	0	0	0	0	1	0	0	0	3141	680	24	2	1254	2	CDH3	16	68718519	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	313602	68718519	21636234	15632	23783											
CDH1	999	broad.mit.edu	37	chr16	68835640	68835640	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgacacccgattcaaagtGggcacagatggtgtgattac	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68835640	T	T	68835640	2	4	9	1	0	0	0	0	0	0	0	1	3125	1335	47	2		2	CDH1	16	68835640	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	117121	68835640	21519113	15633	23784											
CDH1	999	broad.mit.edu	37	chr16	68844127	68844127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacgctgtgtcatccaacGggaatgcagttgaggatcca	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68844127	T	T	68844127	3	4	9	1	0	0	0	0	1	0	0	0	3125	1116	39	1	737	1	CDH1	16	68844127	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8487	68844127	21510626	15634	23785											
CDH1	999	broad.mit.edu	37	chr16	68849628	68849628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcacatcctacactgccCaggagccagacacatttatg	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68849628	A	A	68849628	3	1	9	1	0	0	0	0	1	0	0	0	3125	595	21	2	1569	2	CDH1	16	68849628	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5501	68849628	21505125	15635	23786											
CDH1	999	broad.mit.edu	37	chr16	68867246	68867246	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgccttatgattctctgctCgtgtttgactatgaaggaag	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68867246	A	A	68867246	2	1	9	1	0	0	0	0	0	0	0	1	3125	871	31	3		3	CDH1	16	68867246	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17618	68867246	21487507	15636	23787											
TMCO7	79613	broad.mit.edu	37	chr16	68894269	68894269	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgctgcccccgatgcaactCgaagactgtacaccagctgc	9	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68894269	A	A	68894269	2	1	9	1	0	0	0	0	0	0	0	1	16124	876	31	3		3	TMCO7	16	68894269	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27023	68894269	21460484	15637	23788											
TMCO7	79613	broad.mit.edu	37	chr16	68894311	68894311	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcccttctgaatgttgctCagcacacatctctggggagc	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68894311	A	A	68894311	3	1	9	1	0	0	0	0	1	0	0	0	16124	827	29	3	625	3	TMCO7	16	68894311	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42	68894311	21460442	15638	23789											
TMCO7	79613	broad.mit.edu	37	chr16	68901099	68901099	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgttcaggcagtagtcCggggcattttggaaggagca	16	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68901099	A	A	68901099	2	1	9	1	0	0	0	0	0	0	0	1	16124	643	23	1		1	TMCO7	16	68901099	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6788	68901099	21453654	15639	23790											
TMCO7	79613	broad.mit.edu	37	chr16	68912103	68912103	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactacctttataactttgtCaagagaacgcccacatttgg	6	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68912103	G	G	68912103	4	3	9	1	0	0	0	0	0	1	0	0	16124	838	29	4	1236	4	TMCO7	16	68912103	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11004	68912103	21442650	15640	23791											
TMCO7	79613	broad.mit.edu	37	chr16	68936454	68936454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagatttagttccgccCaaaaggccattcagtgattc	7	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68936454	A	A	68936454	1	1	9	0	1	0	0	0	0	0	0	0	16124	609	21	2		2	TMCO7	16	68936454	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24351	68936454	21418299	15641	23792											
TMCO7	79613	broad.mit.edu	37	chr16	68952982	68952982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctcaattcccttttttGggtaggtggtggactttgta	11	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68952982	T	T	68952982	1	4	9	0	1	0	0	0	0	0	0	0	16124	1363	47	2		2	TMCO7	16	68952982	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16528	68952982	21401771	15642	23793											
HAS3	3038	broad.mit.edu	37	chr16	69148799	69148799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctacgcctgcttccttcGgggcaatgcagagatgatct	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69148799	T	T	69148799	3	4	9	1	0	0	0	0	1	0	0	0	7029	1116	39	1	1302	1	HAS3	16	69148799	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	195817	69148799	21205954	15643	23794											
SNTB2	6645	broad.mit.edu	37	chr16	69293996	69293996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcaggaacacgttgatcCtacgctgcaaagatacagcc	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69293996	A	A	69293996	3	1	9	1	0	0	0	0	1	0	0	0	14987	680	24	2	848	2	SNTB2	16	69293996	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145197	69293996	21060757	15644	23795											
SNTB2	6645	broad.mit.edu	37	chr16	69304173	69304173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccatgccacagctaccCacttgttgccaccaggtaag	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69304173	A	A	69304173	3	1	9	1	0	0	0	0	1	0	0	0	14987	594	21	2	1147	2	SNTB2	16	69304173	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10177	69304173	21050580	15645	23796											
SNTB2	6645	broad.mit.edu	37	chr16	69317988	69317988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggatgtcgatccccctccCttggatctgaccttacattt	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69317988	A	A	69317988	3	1	9	1	0	0	0	0	1	0	0	0	14987	681	24	2	1204	2	SNTB2	16	69317988	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13815	69317988	21036765	15646	23797											
SNTB2	6645	broad.mit.edu	37	chr16	69318050	69318050	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggcattgagatgcatctCttcagggtggagacacatcg	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69318050	A	A	69318050	2	1	9	1	0	0	0	0	0	0	0	1	14987	900	32	3		3	SNTB2	16	69318050	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62	69318050	21036703	15647	23798											
SNTB2	6645	broad.mit.edu	37	chr16	69318070	69318070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagggtggagacacatcGggatctgtcatcctggacca	12	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69318070	T	T	69318070	3	4	9	1	0	0	0	0	1	0	0	0	14987	1116	39	1	1286	1	SNTB2	16	69318070	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20	69318070	21036683	15648	23799											
SNTB2	6645	broad.mit.edu	37	chr16	69333665	69333665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttggattttggtggtccCgagggagaactggtaagagt	15	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69333665	A	A	69333665	2	1	9	1	0	0	0	0	0	0	0	1	14987	639	23	1		1	SNTB2	16	69333665	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15595	69333665	21021088	15649	23800											
VPS4A	27183	broad.mit.edu	37	chr16	69352756	69352756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggagaagcccaacatacGgtggaacgacgtggccgggc	16	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69352756	T	T	69352756	3	4	9	1	0	0	0	0	1	0	0	0	17339	1116	39	1	392	1	VPS4A	16	69352756	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19091	69352756	21001997	15650	23801											
NIP7	51388	broad.mit.edu	37	chr16	69373760	69373760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgactgaagaggagaccCgtgtcatgtttgagaagata	12	6	1	6	rs145696197		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69373760	A	A	69373760	3	1	9	1	0	0	0	0	1	0	0	0	10516	652	23	1	30	1	NIP7	16	69373760	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21004	69373760	20980993	15651	23802											
TMED6	146456	broad.mit.edu	37	chr16	69383437	69383437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaacagacctgtctcttGggtagagaagttaatctggc	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69383437	T	T	69383437	3	4	9	1	0	0	0	0	1	0	0	0	16131	1357	47	2	403	2	TMED6	16	69383437	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9677	69383437	20971316	15652	23803											
CYB5B	80777	broad.mit.edu	37	chr16	69496391	69496391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttaggtttcctgtacCgctactacacatcggaaagc	7	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69496391	A	A	69496391	3	1	9	1	0	0	0	0	1	0	0	0	4156	652	23	1	439	1	CYB5B	16	69496391	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	112954	69496391	20858362	15653	23804											
NFAT5	10725	broad.mit.edu	37	chr16	69689611	69689611	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggcctgcagagtaactGgacgaaatacaactccttgc	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69689611	T	T	69689611	4	4	9	1	0	0	0	0	0	1	0	0	10455	1349	47	2	1127	2	NFAT5	16	69689611	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	193220	69689611	20665142	15654	23805											
NFAT5	10725	broad.mit.edu	37	chr16	69727869	69727869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagattcagttggtacaaGggtcacctagttctcaagag	10	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69727869	T	T	69727869	3	4	9	1	0	0	0	0	1	0	0	0	10455	1000	35	2	4191	2	NFAT5	16	69727869	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38258	69727869	20626884	15655	23806											
NQO1	1728	broad.mit.edu	37	chr16	69745057	69745057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacagtggtgtctcatccCaaatattctccaggcgtttc	7	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69745057	A	A	69745057	3	1	9	1	0	0	0	0	1	0	0	0	10706	595	21	2	181	2	NQO1	16	69745057	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17188	69745057	20609696	15656	23807											
NQO1	1728	broad.mit.edu	37	chr16	69745103	69745103	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttccaggatttgaattcGggcgtctgctggagtgtgcc	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69745103	T	T	69745103	2	4	9	1	0	0	0	0	0	0	0	1	10706	1124	39	1		1	NQO1	16	69745103	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46	69745103	20609650	15657	23808											
NQO1	1728	broad.mit.edu	37	chr16	69745220	69745220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagagaggtaagtcaacCaattccatgcagttgtacta	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69745220	A	A	69745220	1	1	9	0	1	0	0	0	0	0	0	0	10706	609	21	2		2	NQO1	16	69745220	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	69745220	20609533	15658	23809											
NQO1	1728	broad.mit.edu	37	chr16	69746963	69746963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaatgacattcatgtcccCgtggatcccttgcagagagt	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69746963	A	A	69746963	3	1	9	1	0	0	0	0	1	0	0	0	10706	652	23	1	345	1	NQO1	16	69746963	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1743	69746963	20607790	15659	23810											
WWP2	11060	broad.mit.edu	37	chr16	69959338	69959338	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttcttgtgtttagtcttcGagtgcttcgactgaccatga	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69959338	T	T	69959338	2	4	9	1	0	0	0	0	0	0	0	1	17543	1045	37	3		3	WWP2	16	69959338	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	212375	69959338	20395415	15660	23811											
WWP2	11060	broad.mit.edu	37	chr16	69965086	69965086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcccctggtgcttatgacCgcagttttcggtggaagtat	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69965086	A	A	69965086	3	1	9	1	0	0	0	0	1	0	0	0	17543	652	23	1	1531	1	WWP2	16	69965086	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5748	69965086	20389667	15661	23812											
WWP2	11060	broad.mit.edu	37	chr16	69965195	69965195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatttcagtgtgagttccCggcacagcagcaggtatcgg	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69965195	A	A	69965195	1	1	9	0	1	0	0	0	0	0	0	0	17543	667	23	1		1	WWP2	16	69965195	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	109	69965195	20389558	15662	23813											
WWP2	11060	broad.mit.edu	37	chr16	69969785	69969785	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggaaagttcatcgacacGggcttcaccctccctttcta	7	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69969785	T	T	69969785	2	4	9	1	0	0	0	0	0	0	0	1	17543	1103	39	1		1	WWP2	16	69969785	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4590	69969785	20384968	15663	23814											
CLEC18C	283971	broad.mit.edu	37	chr16	70012107	70012107	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaactatcctgcaactgcGgggaggaagctccttacttt	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70012107	T	T	70012107	1	4	9	0	1	0	0	0	0	0	0	0	3536	1131	39	1		1	CLEC18C	16	70012107	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42322	70012107	20342646	15664	23815											
CLEC18C	283971	broad.mit.edu	37	chr16	70012278	70012278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatcctcataactgtacCcttacacaatctatctctac	2	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70012278	A	A	70012278	1	1	9	0	1	0	0	0	0	0	0	0	3536	638	22	2		2	CLEC18C	16	70012278	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	171	70012278	20342475	15665	23816											
PDPR	55066	broad.mit.edu	37	chr16	70190519	70190519	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcccatttaccggaatGggcagtatgttggcaagacc	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70190519	T	T	70190519	3	4	9	1	0	0	0	0	1	0	0	0	11783	1348	47	2	2443	2	PDPR	16	70190519	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	178241	70190519	20164234	15666	23817											
AARS	16	broad.mit.edu	37	chr16	70305819	70305819	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccacaggggcccgtgtcaCccatctcccagaagttatcc	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70305819	T	T	70305819	3	4	9	1	0	0	0	0	1	0	0	0	19	507	18	4	2438	4	AARS	16	70305819	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	115300	70305819	20048934	15667	23818											
AARS	16	broad.mit.edu	37	chr16	70316518	70316518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaaaaaaggaaaaaccCttacctggttcatgcctgca	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70316518	A	A	70316518	1	1	9	0	1	0	0	0	0	0	0	0	19	696	24	2		2	AARS	16	70316518	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10699	70316518	20038235	15668	23819											
AARS	16	broad.mit.edu	37	chr16	70316556	70316556	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattggcaaagagcaaagtGgggtcatccaatgggatggt	15	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70316556	T	T	70316556	2	4	9	1	0	0	0	0	0	0	0	1	19	1335	47	2		2	AARS	16	70316556	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	70316556	20038197	15669	23820											
DDX19A	55308	broad.mit.edu	37	chr16	70348758	70348758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaattgtctcaactgttGggtatgggatgcgattttga	12	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70348758	T	T	70348758	1	4	9	0	1	0	0	0	0	0	0	0	4379	1363	47	2		2	DDX19A	16	70348758	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32202	70348758	20005995	15670	23821											
DDX19B	11269	broad.mit.edu	37	chr16	70359553	70359553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaatgggcaaattttaccCtgaactgaagctagcttatg	8	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70359553	A	A	70359553	3	1	9	1	0	0	0	0	1	0	0	0	4380	681	24	2	595	2	DDX19B	16	70359553	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10795	70359553	19995200	15671	23822											
DDX19A	55308	broad.mit.edu	37	chr16	70398350	70398350	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtaatatagagaagcaCgaagggggaaatatgccttt	13	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70398350	T	T	70398350	1	4	9	0	1	0	0	0	0	0	0	0	4379	551	19	4		4	DDX19A	16	70398350	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	38797	70398350	19956403	15672	23823											
DDX19A	55308	broad.mit.edu	37	chr16	70400726	70400726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccttgtgtaacctctacGgggccatcaccattgctcaa	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70400726	T	T	70400726	3	4	9	1	0	0	0	0	1	0	0	0	4379	1116	39	1	1016	1	DDX19A	16	70400726	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2376	70400726	19954027	15673	23824											
COG4	25839	broad.mit.edu	37	chr16	70531856	70531856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccttattgacagtctccCtcatgaagtactcctccatg	5	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70531856	A	A	70531856	3	1	9	1	0	0	0	0	1	0	0	0	3692	681	24	2	1111	2	COG4	16	70531856	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131130	70531856	19822897	15674	23825											
COG4	25839	broad.mit.edu	37	chr16	70543221	70543221	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcagatatttgatcagGgtatagagtctccctggccc	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70543221	T	T	70543221	2	4	9	1	0	0	0	0	0	0	0	1	3692	1219	43	2		2	COG4	16	70543221	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11365	70543221	19811532	15675	23826											
SF3B3	23450	broad.mit.edu	37	chr16	70564701	70564701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacagagatgctgcagccCgacttaccatttcatctccc	7	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70564701	A	A	70564701	2	1	9	1	0	0	0	0	0	0	0	1	14265	644	23	1		1	SF3B3	16	70564701	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21480	70564701	19790052	15676	23827											
SF3B3	23450	broad.mit.edu	37	chr16	70569300	70569300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgaccagccagatatcCgctgtccaattcccaggagg	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70569300	A	A	70569300	3	1	9	1	0	0	0	0	1	0	0	0	14265	652	23	1	820	1	SF3B3	16	70569300	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4599	70569300	19785453	15677	23828											
SF3B3	23450	broad.mit.edu	37	chr16	70572277	70572277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgtctgctctgcaaccCataaaaccaaatcgatgttc	5	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70572277	A	A	70572277	3	1	9	1	0	0	0	0	1	0	0	0	14265	594	21	2	899	2	SF3B3	16	70572277	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2977	70572277	19782476	15678	23829											
SF3B3	23450	broad.mit.edu	37	chr16	70573045	70573045	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatattttgatactgtaccCgttgctgctgccatgtgtgt	9	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70573045	A	A	70573045	2	1	9	1	0	0	0	0	0	0	0	1	14265	639	23	1		1	SF3B3	16	70573045	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	768	70573045	19781708	15679	23830											
SF3B3	23450	broad.mit.edu	37	chr16	70590110	70590110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaatgagtacacagaacGgaaggagatgtcagcagatg	14	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70590110	T	T	70590110	3	4	9	1	0	0	0	0	1	0	0	0	14265	1116	39	1	1789	1	SF3B3	16	70590110	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17065	70590110	19764643	15680	23831											
SF3B3	23450	broad.mit.edu	37	chr16	70590173	70590173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccccctggagagcagcGgtctcgcttcctggctgtgg	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70590173	T	T	70590173	3	4	9	1	0	0	0	0	1	0	0	0	14265	1116	39	1	1852	1	SF3B3	16	70590173	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	70590173	19764580	15681	23832											
SF3B3	23450	broad.mit.edu	37	chr16	70594450	70594450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactcggtacctggggtccCgtcctgtgaagctcttccga	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70594450	A	A	70594450	3	1	9	1	0	0	0	0	1	0	0	0	14265	652	23	1	2147	1	SF3B3	16	70594450	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4277	70594450	19760303	15682	23833											
SF3B3	23450	broad.mit.edu	37	chr16	70595652	70595652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcctcggaacagtgtccCgagggcattgtggccatctc	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70595652	A	A	70595652	2	1	9	1	0	0	0	0	0	0	0	1	14265	639	23	1		1	SF3B3	16	70595652	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1202	70595652	19759101	15683	23834											
SF3B3	23450	broad.mit.edu	37	chr16	70597744	70597744	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accagtttctgggtccgagtGagtattaaataactgccttg	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70597744	T	T	70597744	1	4	9	0	1	0	0	0	0	0	0	0	14265	1305	45	3		3	SF3B3	16	70597744	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2092	70597744	19757009	15684	23835											
SF3B3	23450	broad.mit.edu	37	chr16	70597801	70597801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttggcattagagaagctcGgtgctgtcttcaatcaagta	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70597801	T	T	70597801	3	4	9	1	0	0	0	0	1	0	0	0	14265	1116	39	1	2377	1	SF3B3	16	70597801	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	57	70597801	19756952	15685	23836											
SF3B3	23450	broad.mit.edu	37	chr16	70599117	70599117	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatccgagtgatgaatccCattcaagggaacacactgga	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70599117	A	A	70599117	2	1	9	1	0	0	0	0	0	0	0	1	14265	581	21	2		2	SF3B3	16	70599117	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1316	70599117	19755636	15686	23837											
IL34	146433	broad.mit.edu	37	chr16	70690833	70690833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagaggcccatgtctccCgagttgcagtgacttccctg	11	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70690833	A	A	70690833	1	1	9	0	1	0	0	0	0	0	0	0	7764	667	23	1		1	IL34	16	70690833	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	91716	70690833	19663920	15687	23838											
VAC14	55697	broad.mit.edu	37	chr16	70721905	70721905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccaggtgcttgttctGgaccttctcaaagtgctgca	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70721905	T	T	70721905	3	4	9	1	0	0	0	0	1	0	0	0	17238	1357	47	2	77	2	VAC14	16	70721905	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31072	70721905	19632848	15688	23839											
VAC14	55697	broad.mit.edu	37	chr16	70818632	70818632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagctttacagacagacGggagaaacagattgtagaaa	10	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70818632	T	T	70818632	1	4	9	0	1	0	0	0	0	0	0	0	17238	1131	39	1		1	VAC14	16	70818632	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	96727	70818632	19536121	15689	23840											
VAC14	55697	broad.mit.edu	37	chr16	70820260	70820260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctgggccacgaactccCggaccagcctggagagagag	14	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70820260	A	A	70820260	3	1	9	1	0	0	0	0	1	0	0	0	17238	652	23	1	2307	1	VAC14	16	70820260	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1628	70820260	19534493	15690	23841											
HYDIN	54768	broad.mit.edu	37	chr16	70841818	70841818	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggggatgatatactctcCacctgcgagcgatgatagga	14	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70841818	A	A	70841818	4	1	9	1	0	0	0	0	0	1	0	0	7537	603	21	2	338	2	HYDIN	16	70841818	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21558	70841818	19512935	15691	23842											
HYDIN	54768	broad.mit.edu	37	chr16	70843862	70843862	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtgcaaagttagtcttcCgaaggtttctccagctttca	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70843862	A	A	70843862	4	1	9	1	0	0	0	0	0	1	0	0	7537	661	23	1	666	1	HYDIN	16	70843862	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2044	70843862	19510891	15692	23843											
HYDIN	54768	broad.mit.edu	37	chr16	70897041	70897041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggtatcttctgagaccCagctgaattccagctggaca	10	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70897041	A	A	70897041	3	1	9	1	0	0	0	0	1	0	0	0	7537	595	21	2	3925	2	HYDIN	16	70897041	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53179	70897041	19457712	15693	23844											
HYDIN	54768	broad.mit.edu	37	chr16	70954583	70954583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatgtctaggaagggtaCgcccaggtccttctccttct	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70954583	A	A	70954583	3	1	9	1	0	0	0	0	1	0	0	0	7537	536	19	3	7833	3	HYDIN	16	70954583	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57542	70954583	19400170	15694	23845											
HYDIN	54768	broad.mit.edu	37	chr16	70975566	70975566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctttttggctttctcctGggccttcatggctgcgtaat	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70975566	T	T	70975566	3	4	9	1	0	0	0	0	1	0	0	0	7537	1357	47	2	8715	2	HYDIN	16	70975566	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20983	70975566	19379187	15695	23846											
HYDIN	54768	broad.mit.edu	37	chr16	70975619	70975619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaatgtatatatgctccCggctgccaatggccttcagc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70975619	A	A	70975619	3	1	9	1	0	0	0	0	1	0	0	0	7537	652	23	1	8768	1	HYDIN	16	70975619	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	70975619	19379134	15696	23847											
HYDIN	54768	broad.mit.edu	37	chr16	71127815	71127815	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgccttcccctttgattcGgaggggcagacggatttctc	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71127815	T	T	71127815	2	4	9	1	0	0	0	0	0	0	0	1	7537	1124	39	1		1	HYDIN	16	71127815	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152196	71127815	19226938	15697	23848											
FTSJD1	55783	broad.mit.edu	37	chr16	71317920	71317920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcctgtatgaagctccCgcaatgaatgtagaaggcag	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71317920	A	A	71317920	3	1	9	1	0	0	0	0	1	0	0	0	6150	652	23	1	412	1	FTSJD1	16	71317920	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	190105	71317920	19036833	15698	23849											
CALB2	794	broad.mit.edu	37	chr16	71416610	71416610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaaagaggttgacattcCtgttgttgcaggcttggcgg	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71416610	A	A	71416610	1	1	9	0	1	0	0	0	0	0	0	0	2600	696	24	2		2	CALB2	16	71416610	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	98690	71416610	18938143	15699	23850											
CALB2	794	broad.mit.edu	37	chr16	71417927	71417927	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctctcagagatgtccCggtaagcacctcacccccgg	11	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71417927	A	A	71417927	2	1	9	1	0	0	0	0	0	0	0	1	2600	666	23	1		1	CALB2	16	71417927	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1317	71417927	18936826	15700	23851											
CALB2	794	broad.mit.edu	37	chr16	71423540	71423540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctaagccacttatcctGggatgagatgagagaaaggt	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71423540	T	T	71423540	1	4	9	0	1	0	0	0	0	0	0	0	2600	1363	47	2		2	CALB2	16	71423540	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5613	71423540	18931213	15701	23852											
ZNF23	7571	broad.mit.edu	37	chr16	71483580	71483580	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaaaaacactcctccacGgggcttgtctcatctttcac	5	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71483580	T	T	71483580	2	4	9	1	0	0	0	0	0	0	0	1	17909	1103	39	1		1	ZNF23	16	71483580	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60040	71483580	18871173	15702	23853											
CHST4	10164	broad.mit.edu	37	chr16	71570700	71570700	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctatgaaggcacagccCgagcgcatgcacgtgctggt	13	12	1	1	rs143274002		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71570700	A	A	71570700	2	1	9	1	0	0	0	0	0	0	0	1	3437	639	23	1		1	CHST4	16	71570700	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87120	71570700	18784053	15703	23854											
MARVELD3	91862	broad.mit.edu	37	chr16	71674724	71674724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagagaggctctatgccCgcaagggtctcacctggatg	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71674724	A	A	71674724	3	1	9	1	0	0	0	0	1	0	0	0	9411	652	23	1	1652	1	MARVELD3	16	71674724	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104024	71674724	18680029	15704	23855											
PHLPP2	23035	broad.mit.edu	37	chr16	71682889	71682889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctgtttcatttgttcCttcacttcttcttccaggtc	7	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71682889	A	A	71682889	3	1	9	1	0	0	0	0	1	0	0	0	11950	680	24	2	99	2	PHLPP2	16	71682889	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8165	71682889	18671864	15705	23856											
PHLPP2	23035	broad.mit.edu	37	chr16	71689261	71689261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgggagctcctcatttcGgtctccatcaaacatgccat	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71689261	T	T	71689261	2	4	9	1	0	0	0	0	0	0	0	1	11950	1124	39	1		1	PHLPP2	16	71689261	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6372	71689261	18665492	15706	23857											
PHLPP2	23035	broad.mit.edu	37	chr16	71703183	71703183	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggcacacatacctcacGggaacctctgtgagaagatt	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71703183	T	T	71703183	2	4	9	1	0	0	0	0	0	0	0	1	11950	1103	39	1		1	PHLPP2	16	71703183	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13922	71703183	18651570	15707	23858											
PHLPP2	23035	broad.mit.edu	37	chr16	71710481	71710481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagtcagtcggttgtccCgcagatccacgtgggtgatg	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71710481	A	A	71710481	3	1	9	1	0	0	0	0	1	0	0	0	11950	652	23	1	2675	1	PHLPP2	16	71710481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7298	71710481	18644272	15708	23859											
PHLPP2	23035	broad.mit.edu	37	chr16	71715677	71715677	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagtgtatcgaggcctccGggtctttctaactgcatgaa	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71715677	T	T	71715677	2	4	9	1	0	0	0	0	0	0	0	1	11950	1103	39	1		1	PHLPP2	16	71715677	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5196	71715677	18639076	15709	23860											
AP1G1	164	broad.mit.edu	37	chr16	71768459	71768459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagcagaattttatttcGggaaatatgcttacacttcg	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71768459	T	T	71768459	1	4	9	0	1	0	0	0	0	0	0	0	734	1131	39	1		1	AP1G1	16	71768459	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52782	71768459	18586294	15710	23861											
AP1G1	164	broad.mit.edu	37	chr16	71768554	71768554	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacttgtgtgatggtcccCgtgttaaatgctgggacaat	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71768554	A	A	71768554	2	1	9	1	0	0	0	0	0	0	0	1	734	639	23	1		1	AP1G1	16	71768554	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	71768554	18586199	15711	23862											
AP1G1	164	broad.mit.edu	37	chr16	71779571	71779571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaacctagattccctaccCaaaataatcaccattaacta	2	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71779571	A	A	71779571	1	1	9	0	1	0	0	0	0	0	0	0	734	609	21	2		2	AP1G1	16	71779571	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11017	71779571	18575182	15712	23863											
AP1G1	164	broad.mit.edu	37	chr16	71789896	71789896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttccaagcagactttacCaataaaggtaaaaattaaat	5	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71789896	A	A	71789896	1	1	9	0	1	0	0	0	0	0	0	0	734	609	21	2		2	AP1G1	16	71789896	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10325	71789896	18564857	15713	23864											
AP1G1	164	broad.mit.edu	37	chr16	71823331	71823331	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttcttcagcttgggttcGggctgtccggatggtccgga	15	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71823331	T	T	71823331	2	4	9	1	0	0	0	0	0	0	0	1	734	1124	39	1		1	AP1G1	16	71823331	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33435	71823331	18531422	15714	23865											
ZNF821	55565	broad.mit.edu	37	chr16	71894290	71894290	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcacctcccgctcctcGggggtctcattgtcccgccg	10	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71894290	T	T	71894290	2	4	9	1	0	0	0	0	0	0	0	1	18307	1103	39	1		1	ZNF821	16	71894290	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70959	71894290	18460463	15715	23866											
ZNF821	55565	broad.mit.edu	37	chr16	71913800	71913800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttccagaagacaaagccCgatactcacagtgaacttta	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71913800	A	A	71913800	1	1	9	0	1	0	0	0	0	0	0	0	18307	667	23	1		1	ZNF821	16	71913800	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19510	71913800	18440953	15716	23867											
ZNF821	55565	broad.mit.edu	37	chr16	71913839	71913839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttggatttgtctgtttcCgacgggacatgtttccctga	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71913839	A	A	71913839	3	1	9	1	0	0	0	0	1	0	0	0	18307	652	23	1	1121	1	ZNF821	16	71913839	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	71913839	18440914	15717	23868											
KIAA0174	9798	broad.mit.edu	37	chr16	71961684	71961684	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgactttgatgatctttccCggaggtttgaagagctgaaa	11	6	1	6			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71961684	A	A	71961684	2	1	9	1	0	0	0	0	0	0	0	1	8228	639	23	1		1	KIAA0174	16	71961684	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47845	71961684	18393069	15718	23869											
HP	3240	broad.mit.edu	37	chr16	72094685	72094685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacacctggtatgcgactGggatcttaagctttgataag	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72094685	T	T	72094685	3	4	9	1	0	0	0	0	1	0	0	0	7394	1348	47	2	1143	2	HP	16	72094685	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	133001	72094685	18260068	15719	23870											
DHX38	9785	broad.mit.edu	37	chr16	72130712	72130712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttaccagttgctctccCtgtttcagacattatcggtc	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72130712	A	A	72130712	1	1	9	0	1	0	0	0	0	0	0	0	4551	696	24	2		2	DHX38	16	72130712	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36027	72130712	18224041	15720	23871											
DHX38	9785	broad.mit.edu	37	chr16	72130738	72130738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacattatcggtctgctcGggtagagactccatcccatc	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72130738	T	T	72130738	3	4	9	1	0	0	0	0	1	0	0	0	4551	1116	39	1	347	1	DHX38	16	72130738	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26	72130738	18224015	15721	23872											
DHX38	9785	broad.mit.edu	37	chr16	72136902	72136902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcctgagcgtaggaaggaGggcagcaacccaatcaggaa	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72136902	T	T	72136902	1	4	9	0	1	0	0	0	0	0	0	0	4551	1015	35	2		2	DHX38	16	72136902	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6164	72136902	18217851	15722	23873											
DHX38	9785	broad.mit.edu	37	chr16	72137911	72137911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaaatacatgactgacGggatcctgctccgagagtcc	10	11	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72137911	T	T	72137911	3	4	9	1	0	0	0	0	1	0	0	0	4551	1116	39	1	1941	1	DHX38	16	72137911	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1009	72137911	18216842	15723	23874											
DHX38	9785	broad.mit.edu	37	chr16	72141523	72141523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgtcccgtcaaatatccGggtttgctcatctctcctag	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72141523	T	T	72141523	1	4	9	0	1	0	0	0	0	0	0	0	4551	1131	39	1		1	DHX38	16	72141523	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3612	72141523	18213230	15724	23875											
DHX38	9785	broad.mit.edu	37	chr16	72141561	72141561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtggtctgacctctaccGggcggctgatggtggagttc	16	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72141561	T	T	72141561	3	4	9	1	0	0	0	0	1	0	0	0	4551	1116	39	1	2905	1	DHX38	16	72141561	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38	72141561	18213192	15725	23876											
DHX38	9785	broad.mit.edu	37	chr16	72141583	72141583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctgatggtggagttccCgctggaccctgccctgtcca	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72141583	A	A	72141583	3	1	9	1	0	0	0	0	1	0	0	0	4551	652	23	1	2927	1	DHX38	16	72141583	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	72141583	18213170	15726	23877											
DHX38	9785	broad.mit.edu	37	chr16	72142724	72142725	+	Missense_Mutation	DNP	GC	TT	TT													cggggagtacgtgaacatccGcacagggatgccctgccact							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	72142725	TT	TT	72142724	3	4	9	1	0	0	0	0	1	0	0	0	4551	1087	38	3	3371	3	DHX38	16	72142724	Missense_Mutation	DNP	GC	TCGA-05-4396-01A-21D-1855-08	1141	72142724	18212029	15727	23878											
PMFBP1	83449	broad.mit.edu	37	chr16	72153768	72153768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccgggcagtggggcatccCgatgtacttggtgaggtcca	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72153768	A	A	72153768	3	1	9	1	0	0	0	0	1	0	0	0	12229	652	23	1	42	1	PMFBP1	16	72153768	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11044	72153768	18200985	15728	23879											
PMFBP1	83449	broad.mit.edu	37	chr16	72159235	72159235	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgatttcctcttccagctGagctttcttctcttgggtct	7	11	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72159235	T	T	72159235	3	4	9	1	0	0	0	0	1	0	0	0	12229	1299	45	3	784	3	PMFBP1	16	72159235	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5467	72159235	18195518	15729	23880											
PMFBP1	83449	broad.mit.edu	37	chr16	72159250	72159250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgagctttcttctcttGggtctgtgtcaagctttgct	10	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72159250	T	T	72159250	3	4	9	1	0	0	0	0	1	0	0	0	12229	1357	47	2	799	2	PMFBP1	16	72159250	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	72159250	18195503	15730	23881											
PMFBP1	83449	broad.mit.edu	37	chr16	72174281	72174281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgattgagggtctccCagagacatgttctagaagaa	11	7	3	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72174281	A	A	72174281	1	1	9	0	1	0	0	0	0	0	0	0	12229	609	21	2		2	PMFBP1	16	72174281	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15031	72174281	18180472	15731	23882											
ZFHX3	463	broad.mit.edu	37	chr16	72821469	72821469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtgaggtaataaactaGggtgctctttggcgtttctt	12	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72821469	T	T	72821469	3	4	9	1	0	0	0	0	1	0	0	0	17760	1000	35	2	409	2	ZFHX3	16	72821469	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	647188	72821469	17533284	15732	23883											
ZFHX3	463	broad.mit.edu	37	chr16	72827109	72827109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacataacagaatgctgactGggcagctatttagccctgaa	9	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72827109	T	T	72827109	1	4	9	0	1	0	0	0	0	0	0	0	17760	1363	47	2		2	ZFHX3	16	72827109	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5640	72827109	17527644	15733	23884											
ZFHX3	463	broad.mit.edu	37	chr16	72827368	72827368	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagccatcaactgacgtacGgtggctgggtcaaagtattc	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72827368	T	T	72827368	2	4	9	1	0	0	0	0	0	0	0	1	17760	1103	39	1		1	ZFHX3	16	72827368	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	259	72827368	17527385	15734	23885											
ZFHX3	463	broad.mit.edu	37	chr16	72828579	72828579	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgtgatccaacatctttcGagtcggattggaatccagta	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72828579	T	T	72828579	2	4	9	1	0	0	0	0	0	0	0	1	17760	1066	37	3		3	ZFHX3	16	72828579	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1211	72828579	17526174	15735	23886											
ZFHX3	463	broad.mit.edu	37	chr16	72830034	72830034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcactttctggggcaaccCggacttgtctgccatctctt	9	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72830034	A	A	72830034	3	1	9	1	0	0	0	0	1	0	0	0	17760	652	23	1	4572	1	ZFHX3	16	72830034	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1455	72830034	17524719	15736	23887											
ZFHX3	463	broad.mit.edu	37	chr16	72832030	72832030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctctttggctctgagccCgagtcttcttgtactgaccc	9	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72832030	A	A	72832030	2	1	9	1	0	0	0	0	0	0	0	1	17760	639	23	1		1	ZFHX3	16	72832030	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1996	72832030	17522723	15737	23888											
ZFHX3	463	broad.mit.edu	37	chr16	72832063	72832063	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacccagagtcactgccCgttgggctctgtttatcttc	9	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72832063	A	A	72832063	2	1	9	1	0	0	0	0	0	0	0	1	17760	639	23	1		1	ZFHX3	16	72832063	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	72832063	17522690	15738	23889											
PSMD7	5713	broad.mit.edu	37	chr16	74336135	74336135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatcattgatgtgaagcCgaaggacctagggctgccta	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74336135	A	A	74336135	3	1	9	1	0	0	0	0	1	0	0	0	12809	652	23	1	401	1	PSMD7	16	74336135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1504072	74336135	16018618	15739	23890											
PSMD7	5713	broad.mit.edu	37	chr16	74338330	74338330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaaaatcattcactgccCgagaggtcacacagtgtaag	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74338330	A	A	74338330	1	1	9	0	1	0	0	0	0	0	0	0	12809	667	23	1		1	PSMD7	16	74338330	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2195	74338330	16016423	15740	23891											
CLEC18B	497190	broad.mit.edu	37	chr16	74447479	74447479	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtagcagggcttacccGggggagtaggcacagacaaa	16	8	0	1	rs149591176	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74447479	T	T	74447479	2	4	9	1	0	0	0	0	0	0	0	1	3535	1103	39	1		1	CLEC18B	16	74447479	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	109149	74447479	15907274	15741	23892											
GLG1	2734	broad.mit.edu	37	chr16	74487148	74487148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaatatacagatgctccCactgatcacagagagaatgt	8	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74487148	A	A	74487148	3	1	9	1	0	0	0	0	1	0	0	0	6500	594	21	2	166	2	GLG1	16	74487148	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39669	74487148	15867605	15742	23893											
GLG1	2734	broad.mit.edu	37	chr16	74490601	74490601	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggcgctttttgcactcGggctgtaacctcacccgctt	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74490601	T	T	74490601	2	4	9	1	0	0	0	0	0	0	0	1	6500	1103	39	1		1	GLG1	16	74490601	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3453	74490601	15864152	15743	23894											
GLG1	2734	broad.mit.edu	37	chr16	74490617	74490617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgggctgtaacctcaccCgcttatcctccagtgcttcc	7	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74490617	A	A	74490617	3	1	9	1	0	0	0	0	1	0	0	0	6500	652	23	1	325	1	GLG1	16	74490617	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	74490617	15864136	15744	23895											
GLG1	2734	broad.mit.edu	37	chr16	74499669	74499669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatactttttggtggcagcGggtgcttagctgcttcttgt	12	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74499669	T	T	74499669	3	4	9	1	0	0	0	0	1	0	0	0	6500	1116	39	1	1079	1	GLG1	16	74499669	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9052	74499669	15855084	15745	23896											
GLG1	2734	broad.mit.edu	37	chr16	74542785	74542785	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccacagattcaaatttGggatctgtagttaggttcag	11	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74542785	T	T	74542785	2	4	9	1	0	0	0	0	0	0	0	1	6500	1335	47	2		2	GLG1	16	74542785	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43116	74542785	15811968	15746	23897											
RFWD3	55159	broad.mit.edu	37	chr16	74678306	74678306	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaaagctctcagggttcGggcataaaggacgacaatgt	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74678306	T	T	74678306	2	4	9	1	0	0	0	0	0	0	0	1	13369	1124	39	1		1	RFWD3	16	74678306	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	135521	74678306	15676447	15747	23898											
MLKL	197259	broad.mit.edu	37	chr16	74725239	74725239	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagctctgtggtattctcCtttataaagtgtgctgactt	10	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74725239	A	A	74725239	4	1	9	1	0	0	0	0	0	1	0	0	9712	690	24	2	820	2	MLKL	16	74725239	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46933	74725239	15629514	15748	23899											
MLKL	197259	broad.mit.edu	37	chr16	74725283	74725283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccttagcagaatccacGgggatcctgaaagctgctcc	9	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74725283	T	T	74725283	3	4	9	1	0	0	0	0	1	0	0	0	9712	1116	39	1	864	1	MLKL	16	74725283	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	74725283	15629470	15749	23900											
MLKL	197259	broad.mit.edu	37	chr16	74725375	74725375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaatctgacctcaccccCgagaggaaagaagacaaaag	10	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74725375	A	A	74725375	1	1	9	0	1	0	0	0	0	0	0	0	9712	667	23	1		1	MLKL	16	74725375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92	74725375	15629378	15750	23901											
WDR59	79726	broad.mit.edu	37	chr16	74920205	74920205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcgcgttctcgctcacGgggatcactgtaggtcagac	13	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74920205	T	T	74920205	3	4	9	1	0	0	0	0	1	0	0	0	17435	1116	39	1	427	1	WDR59	16	74920205	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	194830	74920205	15434548	15751	23902											
CFDP1	10428	broad.mit.edu	37	chr16	75446388	75446388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaatctcagtaatgtaGggtatttctggagaggcatt	10	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75446388	T	T	75446388	1	4	9	0	1	0	0	0	0	0	0	0	3312	1015	35	2		2	CFDP1	16	75446388	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	526183	75446388	14908365	15752	23903											
CHST5	23563	broad.mit.edu	37	chr16	75563384	75563384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctctgccagcggctccCgcgccaggtcctcgaagcgc	13	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75563384	A	A	75563384	3	1	9	1	0	0	0	0	1	0	0	0	3438	652	23	1	340	1	CHST5	16	75563384	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116996	75563384	14791369	15753	23904											
GABARAPL2	11345	broad.mit.edu	37	chr16	75611292	75611292	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgctgggctaggtgcacCgtaactgcttgtgtatcttg	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75611292	A	A	75611292	1	1	9	0	1	0	0	0	0	0	0	0	6214	667	23	1		1	GABARAPL2	16	75611292	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	47908	75611292	14743461	15754	23905											
ADAT1	23536	broad.mit.edu	37	chr16	75636987	75636987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaacagcatcacctgaGggagtgtggccacttgtccc	12	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75636987	T	T	75636987	3	4	9	1	0	0	0	0	1	0	0	0	284	1000	35	2	144	2	ADAT1	16	75636987	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25695	75636987	14717766	15755	23906											
KARS	3735	broad.mit.edu	37	chr16	75665562	75665562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagcataccaaccaccCgatgagtatgagagagagca	10	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75665562	A	A	75665562	1	1	9	0	1	0	0	0	0	0	0	0	8050	667	23	1		1	KARS	16	75665562	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28575	75665562	14689191	15756	23907											
KARS	3735	broad.mit.edu	37	chr16	75665728	75665728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtccaatttcataaaccCggtcgatgccaccaaccaca	7	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75665728	A	A	75665728	3	1	9	1	0	0	0	0	1	0	0	0	8050	652	23	1	880	1	KARS	16	75665728	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	166	75665728	14689025	15757	23908											
KARS	3735	broad.mit.edu	37	chr16	75674117	75674117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtcagtcaggtgatccCcaggctgcaggtgactatat	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75674117	A	A	75674117	3	1	9	1	0	0	0	0	1	0	0	0	8050	623	22	2	1488	2	KARS	16	75674117	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8389	75674117	14680636	15758	23909											
KARS	3735	broad.mit.edu	37	chr16	75674199	75674199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgggtatgggtcttcccCattgaccttcagctgatgaa	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75674199	A	A	75674199	3	1	9	1	0	0	0	0	1	0	0	0	8050	594	21	2	1570	2	KARS	16	75674199	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	75674199	14680554	15759	23910											
TERF2IP	54386	broad.mit.edu	37	chr16	75690033	75690033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcaagggggtgatagttGgaagagaccagatattgtaa	16	3	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75690033	T	T	75690033	1	4	9	0	1	0	0	0	0	0	0	0	15885	1363	47	2		2	TERF2IP	16	75690033	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15834	75690033	14664720	15760	23911											
TERF2IP	54386	broad.mit.edu	37	chr16	75690399	75690399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatatcccatttggtccCgacaagatgacatagatttg	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75690399	A	A	75690399	2	1	9	1	0	0	0	0	0	0	0	1	15885	644	23	1		1	TERF2IP	16	75690399	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	366	75690399	14664354	15761	23912											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555116	76555116	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacggagaacttagcgcGgatgtatctttcttttttaa	8	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76555116	T	T	76555116	2	4	9	1	0	0	0	0	0	0	0	1	3681	1103	39	1		1	CNTNAP4	16	76555116	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	864717	76555116	13799637	15762	23913											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555193	76555193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggattgctgattttatacGgatagagcttcgctgtaagt	13	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76555193	T	T	76555193	3	4	9	1	0	0	0	0	1	0	0	0	3681	1116	39	1	2597	1	CNTNAP4	16	76555193	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77	76555193	13799560	15763	23914											
CNTNAP4	85445	broad.mit.edu	37	chr16	76556003	76556003	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatctcagtgcagtcaccCacccacttcaacgacaacca	5	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76556003	A	A	76556003	2	1	9	1	0	0	0	0	0	0	0	1	3681	581	21	2		2	CNTNAP4	16	76556003	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	810	76556003	13798750	15764	23915											
ADAMTS18	170692	broad.mit.edu	37	chr16	77323202	77323202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaagtttgtattacaggctCgtagcaccggaggtttctga	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77323202	A	A	77323202	3	1	9	1	0	0	0	0	1	0	0	0	263	884	31	3	164	3	ADAMTS18	16	77323202	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	767199	77323202	13031551	15765	23916											
ADAMTS18	170692	broad.mit.edu	37	chr16	77325276	77325276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggtttcttaatattacGgcatcttcgctctgggaaag	9	7	3	0	rs142178461	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77325276	T	T	77325276	3	4	9	1	0	0	0	0	1	0	0	0	263	1116	39	1	388	1	ADAMTS18	16	77325276	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2074	77325276	13029477	15766	23917											
ADAMTS18	170692	broad.mit.edu	37	chr16	77465470	77465470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgtgaaatatatgaccCggctgagtctacttctactg	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77465470	A	A	77465470	3	1	9	1	0	0	0	0	1	0	0	0	263	652	23	1	3532	1	ADAMTS18	16	77465470	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	140194	77465470	12889283	15767	23918											
WWOX	51741	broad.mit.edu	37	chr16	78143686	78143686	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttcagatttgccatacGgatgggaacaagaaactgat	11	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78143686	T	T	78143686	4	4	9	1	0	0	0	0	0	1	0	0	17541	1117	39	1	198	1	WWOX	16	78143686	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	678216	78143686	12211067	15768	23919											
CDYL2	124359	broad.mit.edu	37	chr16	80667072	80667072	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagacgtagtccttctcCgcttccagcttcctcttcac	5	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80667072	A	A	80667072	2	1	9	1	0	0	0	0	0	0	0	1	3216	639	23	1		1	CDYL2	16	80667072	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2523386	80667072	9687681	15769	23920											
ATMIN	23300	broad.mit.edu	37	chr16	81075946	81075946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtgcagcaattcgtacGgtacagaatgggacctgaaa	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81075946	T	T	81075946	3	4	9	1	0	0	0	0	1	0	0	0	1114	1116	39	1	533	1	ATMIN	16	81075946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	408874	81075946	9278807	15770	23921											
ATMIN	23300	broad.mit.edu	37	chr16	81078125	81078125	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacatagagactcaaacGgacttcttactcgcagatac	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81078125	T	T	81078125	2	4	9	1	0	0	0	0	0	0	0	1	1114	1103	39	1		1	ATMIN	16	81078125	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2179	81078125	9276628	15771	23922											
ATMIN	23300	broad.mit.edu	37	chr16	81078250	81078250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcttagacagtagccCtcatctgcctctgggaagta	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81078250	A	A	81078250	3	1	9	1	0	0	0	0	1	0	0	0	1114	681	24	2	2161	2	ATMIN	16	81078250	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125	81078250	9276503	15772	23923											
PKD1L2	114780	broad.mit.edu	37	chr16	81224293	81224293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccttcagcattcatccCagatggttcttggagaccgg	9	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81224293	A	A	81224293	3	1	9	1	0	0	0	0	1	0	0	0	12060	594	21	2	5940	2	PKD1L2	16	81224293	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	146043	81224293	9130460	15773	23924											
PKD1L2	114780	broad.mit.edu	37	chr16	81232288	81232288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaccggaacagccaggcGgcaaatcccaaatggctctc	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81232288	T	T	81232288	3	4	9	1	0	0	0	0	1	0	0	0	12060	1116	39	1	6074	1	PKD1L2	16	81232288	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7995	81232288	9122465	15774	23925											
BCMO1	53630	broad.mit.edu	37	chr16	81295771	81295771	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttgtctcacaccatcccCgatttcaccgacaactgcct	4	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81295771	A	A	81295771	2	1	9	1	0	0	0	0	0	0	0	1	1389	639	23	1		1	BCMO1	16	81295771	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	63483	81295771	9058982	15775	23926											
BCMO1	53630	broad.mit.edu	37	chr16	81295811	81295811	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaacatcatgaagtgcGgagaagacttctacgcgacc	10	10	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81295811	T	T	81295811	4	4	9	1	0	0	0	0	0	1	0	0	1389	1117	39	1	408	1	BCMO1	16	81295811	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40	81295811	9058942	15776	23927											
BCMO1	53630	broad.mit.edu	37	chr16	81303678	81303678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagcctagctcctggcGgggctgggttttgttcagcc	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81303678	T	T	81303678	1	4	9	0	1	0	0	0	0	0	0	0	1389	1131	39	1		1	BCMO1	16	81303678	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7867	81303678	9051075	15777	23928											
GAN	8139	broad.mit.edu	37	chr16	81388139	81388139	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaactgtattggtatcCgtgactttgcactacattac	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81388139	G	G	81388139	3	3	9	1	0	0	0	0	1	0	0	0	6294	652	23	4	422	4	GAN	16	81388139	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84461	81388139	8966614	15778	23929											
GAN	8139	broad.mit.edu	37	chr16	81390379	81390379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcgccccatctttcttccCtcttctgcaggtccacatga	5	16	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81390379	A	A	81390379	1	1	9	0	1	0	0	0	0	0	0	0	6294	696	24	2		2	GAN	16	81390379	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2240	81390379	8964374	15779	23930											
GAN	8139	broad.mit.edu	37	chr16	81390561	81390561	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggccaacttcaaacccCggggctactctgagtgcatc	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81390561	A	A	81390561	2	1	9	1	0	0	0	0	0	0	0	1	6294	643	23	1		1	GAN	16	81390561	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	182	81390561	8964192	15780	23931											
GAN	8139	broad.mit.edu	37	chr16	81410860	81410860	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagaatttatgcatcccCgccagttcctcttttgttta	6	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81410860	A	A	81410860	2	1	9	1	0	0	0	0	0	0	0	1	6294	639	23	1		1	GAN	16	81410860	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20299	81410860	8943893	15781	23932											
GAN	8139	broad.mit.edu	37	chr16	81410882	81410882	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttcctcttttgtttatGgagctgtacctataggagcc	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81410882	T	T	81410882	4	4	9	1	0	0	0	0	0	1	0	0	6294	1349	47	2	1599	2	GAN	16	81410882	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	81410882	8943871	15782	23933											
CMIP	80790	broad.mit.edu	37	chr16	81641247	81641247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtcctgggagaatgccCcgaagtactgtttacagctc	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81641247	A	A	81641247	3	1	9	1	0	0	0	0	1	0	0	0	3610	623	22	2	404	2	CMIP	16	81641247	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	230365	81641247	8713506	15783	23934											
CMIP	80790	broad.mit.edu	37	chr16	81694459	81694459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtggctatctaccccacGgttcctgatgcttgtttgtt	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81694459	T	T	81694459	1	4	9	0	1	0	0	0	0	0	0	0	3610	1131	39	1		1	CMIP	16	81694459	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53212	81694459	8660294	15784	23935											
PLCG2	5336	broad.mit.edu	37	chr16	81902800	81902800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctcaaggtgacagaactGggtctccctcttttgcagca	9	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81902800	T	T	81902800	1	4	9	0	1	0	0	0	0	0	0	0	12131	1363	47	2		2	PLCG2	16	81902800	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	208341	81902800	8451953	15785	23936											
PLCG2	5336	broad.mit.edu	37	chr16	81902989	81902989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggcttgcctttgagttcCgtggaatagtgcacaagaaa	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81902989	A	A	81902989	1	1	9	0	1	0	0	0	0	0	0	0	12131	667	23	1		1	PLCG2	16	81902989	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	189	81902989	8451764	15786	23937											
PLCG2	5336	broad.mit.edu	37	chr16	81914584	81914584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctcttgtgtgtcgttcGgggcggctgtgccggacctc	16	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81914584	T	T	81914584	1	4	9	0	1	0	0	0	0	0	0	0	12131	1131	39	1		1	PLCG2	16	81914584	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11595	81914584	8440169	15787	23938											
PLCG2	5336	broad.mit.edu	37	chr16	81967999	81967999	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaagatgggatttctcGggggcgggcactaaagacag	17	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81967999	T	T	81967999	1	4	9	0	1	0	0	0	0	0	0	0	12131	1131	39	1		1	PLCG2	16	81967999	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53415	81967999	8386754	15788	23939											
CDH13	1012	broad.mit.edu	37	chr16	83636073	83636073	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagactctggaaaatccCaagtatgaactgatcatcga	8	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83636073	A	A	83636073	2	1	9	1	0	0	0	0	0	0	0	1	3129	581	21	2		2	CDH13	16	83636073	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1668074	83636073	6718680	15789	23940											
CDH13	1012	broad.mit.edu	37	chr16	83704543	83704543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaaatccacaccaaccCtcaaaccaacgaagggatgc	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83704543	A	A	83704543	3	1	9	1	0	0	0	0	1	0	0	0	3129	681	24	2	1284	2	CDH13	16	83704543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68470	83704543	6650210	15790	23941											
CDH13	1012	broad.mit.edu	37	chr16	83711884	83711884	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaagacccactcgtaccCgacgtctcctacggccccag	8	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83711884	A	A	83711884	2	1	9	1	0	0	0	0	0	0	0	1	3129	639	23	1		1	CDH13	16	83711884	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7341	83711884	6642869	15791	23942											
CDH13	1012	broad.mit.edu	37	chr16	83781757	83781757	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggttggctgaatattaaccCcatcaatgggactgttgaca	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83781757	G	G	83781757	3	3	9	1	0	0	0	0	1	0	0	0	3129	623	22	4	1625	4	CDH13	16	83781757	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	69873	83781757	6572996	15792	23943											
MLYCD	23417	broad.mit.edu	37	chr16	83940640	83940640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcagaatggttttcctccGggttcctgaacctagaacgg	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83940640	T	T	83940640	3	4	9	1	0	0	0	0	1	0	0	0	9731	1116	39	1	583	1	MLYCD	16	83940640	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	158883	83940640	6414113	15793	23944											
MLYCD	23417	broad.mit.edu	37	chr16	83940659	83940659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggttcctgaacctagaacGggttacctggcattcaccgt	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83940659	T	T	83940659	3	4	9	1	0	0	0	0	1	0	0	0	9731	1116	39	1	602	1	MLYCD	16	83940659	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	83940659	6414094	15794	23945											
MLYCD	23417	broad.mit.edu	37	chr16	83948643	83948643	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttctggggcttctgaactCgcaaacgaaggagcatggga	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83948643	A	A	83948643	4	1	9	1	0	0	0	0	0	1	0	0	9731	893	31	3	1049	3	MLYCD	16	83948643	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7984	83948643	6406110	15795	23946											
NECAB2	54550	broad.mit.edu	37	chr16	84035980	84035980	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggcccgtggaggagccCaccagccccttcttcttgtg	12	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84035980	A	A	84035980	1	1	9	0	1	0	0	0	0	0	0	0	10400	609	21	2		2	NECAB2	16	84035980	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	87337	84035980	6318773	15796	23947											
MBTPS1	8720	broad.mit.edu	37	chr16	84103552	84103552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggttgtggtactgatccCagagaactctcttgcttcgc	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84103552	A	A	84103552	3	1	9	1	0	0	0	0	1	0	0	0	9454	595	21	2	1324	2	MBTPS1	16	84103552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67572	84103552	6251201	15797	23948											
MBTPS1	8720	broad.mit.edu	37	chr16	84120992	84120992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccccttgaagaaaagcGggcgatgttatcttcaaagt	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84120992	T	T	84120992	3	4	9	1	0	0	0	0	1	0	0	0	9454	1116	39	1	2113	1	MBTPS1	16	84120992	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17440	84120992	6233761	15798	23949											
HSDL1	83693	broad.mit.edu	37	chr16	84164764	84164764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctctgctccccaggcGggggataaaatgcagcctga	13	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84164764	T	T	84164764	3	4	9	1	0	0	0	0	1	0	0	0	7460	1116	39	1	845	1	HSDL1	16	84164764	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	43772	84164764	6189989	15799	23950											
HSDL1	83693	broad.mit.edu	37	chr16	84164892	84164892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagacctggcgatttccCtgtacaagaggtagaaactg	11	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84164892	A	A	84164892	3	1	9	1	0	0	0	0	1	0	0	0	7460	681	24	2	973	2	HSDL1	16	84164892	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	128	84164892	6189861	15800	23951											
ATP2C2	9914	broad.mit.edu	37	chr16	84455951	84455951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttttaacaccaattctcGgggtgacagagagattccac	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84455951	T	T	84455951	1	4	9	0	1	0	0	0	0	0	0	0	1148	1131	39	1		1	ATP2C2	16	84455951	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	291059	84455951	5898802	15801	23952											
ATP2C2	9914	broad.mit.edu	37	chr16	84456225	84456225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcatacttctctctctcCtggacacagggggtcgtgat	9	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84456225	A	A	84456225	1	1	9	0	1	0	0	0	0	0	0	0	1148	696	24	2		2	ATP2C2	16	84456225	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	274	84456225	5898528	15802	23953											
ATP2C2	9914	broad.mit.edu	37	chr16	84459400	84459400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagtatgttcacgatcGgggtcaggtaagagtgctat	13	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84459400	T	T	84459400	3	4	9	1	0	0	0	0	1	0	0	0	1148	1116	39	1	1021	1	ATP2C2	16	84459400	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3175	84459400	5895353	15803	23954											
ATP2C2	9914	broad.mit.edu	37	chr16	84476118	84476118	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacaatccccttttaggcGggctgtgttgccaacaatgc	11	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84476118	T	T	84476118	2	4	9	1	0	0	0	0	0	0	0	1	1148	1103	39	1		1	ATP2C2	16	84476118	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16718	84476118	5878635	15804	23955											
ATP2C2	9914	broad.mit.edu	37	chr16	84482211	84482211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaccatgtacaacaacGggggcatccccctgccgctg	10	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84482211	T	T	84482211	3	4	9	1	0	0	0	0	1	0	0	0	1148	1116	39	1	1642	1	ATP2C2	16	84482211	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6093	84482211	5872542	15805	23956											
ATP2C2	9914	broad.mit.edu	37	chr16	84485636	84485636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagtccaggttctctcCgagtctggtgtgtctgtgaa	13	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84485636	A	A	84485636	2	1	9	1	0	0	0	0	0	0	0	1	1148	639	23	1		1	ATP2C2	16	84485636	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3425	84485636	5869117	15806	23957											
ATP2C2	9914	broad.mit.edu	37	chr16	84492885	84492885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccccgcaggagcatctcCgccctgagtctcatcactct	9	17	4	1	rs144698981	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84492885	A	A	84492885	2	1	9	1	0	0	0	0	0	0	0	1	1148	639	23	1		1	ATP2C2	16	84492885	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7249	84492885	5861868	15807	23958											
KIAA1609	57707	broad.mit.edu	37	chr16	84531580	84531580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatttggatgagacattcGggctgtttttatctgatgac	12	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84531580	T	T	84531580	3	4	9	1	0	0	0	0	1	0	0	0	8317	1116	39	1	1285	1	KIAA1609	16	84531580	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	38695	84531580	5823173	15808	23959											
CRISPLD2	83716	broad.mit.edu	37	chr16	84940208	84940208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagcctggggactcctcGggatggaaaggccttccgga	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84940208	T	T	84940208	3	4	9	1	0	0	0	0	1	0	0	0	3915	1116	39	1	1508	1	CRISPLD2	16	84940208	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	408628	84940208	5414545	15809	23960											
ZDHHC7	55625	broad.mit.edu	37	chr16	85011542	85011542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacttaccagtccactgccCtcggacacaggagatgaact	9	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85011542	A	A	85011542	3	1	9	1	0	0	0	0	1	0	0	0	17746	681	24	2	331	2	ZDHHC7	16	85011542	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71334	85011542	5343211	15810	23961											
KIAA0513	9764	broad.mit.edu	37	chr16	85106475	85106475	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaaagcctgcagcttcactGagtgctgcgtgtgtcgccct	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85106475	T	T	85106475	1	4	9	0	1	0	0	0	0	0	0	0	8251	1305	45	3		3	KIAA0513	16	85106475	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	94933	85106475	5248278	15811	23962											
KIAA0513	9764	broad.mit.edu	37	chr16	85106542	85106542	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggacagcgctgcaactcCaagtgtgtctcagaggcaac	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85106542	A	A	85106542	2	1	9	1	0	0	0	0	0	0	0	1	8251	581	21	2		2	KIAA0513	16	85106542	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	67	85106542	5248211	15812	23963											
FAM92B	339145	broad.mit.edu	37	chr16	85143901	85143901	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggtggcccgcagctcGgggttctcggagttggcaaa	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85143901	T	T	85143901	2	4	9	1	0	0	0	0	0	0	0	1	5710	1103	39	1		1	FAM92B	16	85143901	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37359	85143901	5210852	15813	23964											
KIAA0182	23199	broad.mit.edu	37	chr16	85697013	85697013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggaggaattggtggccCagaagcggaggaagcggcgg	20	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85697013	A	A	85697013	3	1	9	1	0	0	0	0	1	0	0	0	8229	595	21	2	2479	2	KIAA0182	16	85697013	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	553112	85697013	4657740	15814	23965											
GINS2	51659	broad.mit.edu	37	chr16	85712085	85712085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaatagcctcagcagacGggagccatgtgaaattatgc	11	9	1	2	rs76490091	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85712085	T	T	85712085	1	4	9	0	1	0	0	0	0	0	0	0	6452	1131	39	1		1	GINS2	16	85712085	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15072	85712085	4642668	15815	23966											
IRF8	3394	broad.mit.edu	37	chr16	85954951	85954951	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccctgttacagtggccCgcatcatgattaaagaatgt	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85954951	A	A	85954951	1	1	9	0	1	0	0	0	0	0	0	0	7906	667	23	1		1	IRF8	16	85954951	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	242866	85954951	4399802	15816	23967											
MTHFSD	64779	broad.mit.edu	37	chr16	86585752	86585752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaagccagataagaccCctagttaggcaaatagacag	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86585752	A	A	86585752	3	1	9	1	0	0	0	0	1	0	0	0	10027	637	22	2	1051	2	MTHFSD	16	86585752	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	630801	86585752	3769001	15817	23968											
ZCCHC14	23174	broad.mit.edu	37	chr16	87445086	87445086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgtgcactggtcctgcGggagcctggtgggcgcggcc	18	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87445086	T	T	87445086	1	4	9	0	1	0	0	0	0	0	0	0	17709	1131	39	1		1	ZCCHC14	16	87445086	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	859334	87445086	2909667	15818	23969											
ZCCHC14	23174	broad.mit.edu	37	chr16	87445206	87445206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtaacaagataggttccCgctctttttgtgactggaac	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87445206	A	A	87445206	3	1	9	1	0	0	0	0	1	0	0	0	17709	652	23	1	147	1	ZCCHC14	16	87445206	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120	87445206	2909547	15819	23970											
ZCCHC14	23174	broad.mit.edu	37	chr16	87445899	87445899	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgtacagagcagtccGggggtttattattgcagggg	17	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87445899	T	T	87445899	2	4	9	1	0	0	0	0	0	0	0	1	17709	1115	39	1		1	ZCCHC14	16	87445899	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	693	87445899	2908854	15820	23971											
ZCCHC14	23174	broad.mit.edu	37	chr16	87447822	87447822	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgggccctctctgtgtacGagtaacccacctgcccggca	10	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87447822	T	T	87447822	1	4	9	0	1	0	0	0	0	0	0	0	17709	1073	37	3		3	ZCCHC14	16	87447822	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1923	87447822	2906931	15821	23972											
ZCCHC14	23174	broad.mit.edu	37	chr16	87493548	87493548	+	Intron	SNP	G	T	T													gcatttaacaatgccctcacGgggatctggggtgtgcccat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87493548	T	T	87493548	1	4	9	0	1	0	0	0	0	0	0	0	17709	1131	39	1		1	ZCCHC14	16	87493548	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45726	87493548	2861205	15822	23973	159	2									
ZCCHC14	23174	broad.mit.edu	37	chr16	87493556	87493556	+	Intron	SNP	G	T	T													caatgccctcacggggatctGgggtgtgcccatcctccgtc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87493556	T	T	87493556	1	4	9	0	1	0	0	0	0	0	0	0	17709	1363	47	2		2	ZCCHC14	16	87493556	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8	87493556	2861197	15823	23974	159	2									
ZCCHC14	23174	broad.mit.edu	37	chr16	87493599	87493599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagacgtcctcctgaaaccCgtgcgtgcactcacctttgc	8	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87493599	A	A	87493599	1	1	9	0	1	0	0	0	0	0	0	0	17709	667	23	1		1	ZCCHC14	16	87493599	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43	87493599	2861154	15824	23975											
KLHDC4	54758	broad.mit.edu	37	chr16	87743094	87743094	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagaccggggctgcccCgccgagcctggcgcggtgag	16	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87743094	A	A	87743094	2	1	9	1	0	0	0	0	0	0	0	1	8429	639	23	1		1	KLHDC4	16	87743094	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	249495	87743094	2611659	15825	23976											
KLHDC4	54758	broad.mit.edu	37	chr16	87748079	87748079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacagaccagccagctccCgccctggaggcacagcacct	9	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87748079	A	A	87748079	1	1	9	0	1	0	0	0	0	0	0	0	8429	667	23	1		1	KLHDC4	16	87748079	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4985	87748079	2606674	15826	23977											
KLHDC4	54758	broad.mit.edu	37	chr16	87764232	87764232	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccgatgtccactccgaccCgaaggaccgcctgttgatct	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87764232	A	A	87764232	2	1	9	1	0	0	0	0	0	0	0	1	8429	639	23	1		1	KLHDC4	16	87764232	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16153	87764232	2590521	15827	23978											
KLHDC4	54758	broad.mit.edu	37	chr16	87782349	87782349	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtggtagaactgctctcCgttgggagaggcaaactccc	13	10	1	2	rs141582040	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87782349	A	A	87782349	4	1	9	1	0	0	0	0	0	1	0	0	8429	661	23	1	1154	1	KLHDC4	16	87782349	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18117	87782349	2572404	15828	23979											
CA5A	763	broad.mit.edu	37	chr16	87969951	87969951	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgccatgcacaggaacgctGagaacaccatcgccctggcc	10	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87969951	T	T	87969951	3	4	9	1	0	0	0	0	1	0	0	0	2545	1299	45	3	839	3	CA5A	16	87969951	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	187602	87969951	2384802	15829	23980											
BANP	54971	broad.mit.edu	37	chr16	88039668	88039668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcggctcttaccacatcGggctggtgtgttttttttcc	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88039668	T	T	88039668	1	4	9	0	1	0	0	0	0	0	0	0	1315	1131	39	1		1	BANP	16	88039668	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	69717	88039668	2315085	15830	23981											
ZC3H18	124245	broad.mit.edu	37	chr16	88643557	88643557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggccgagagccctgaacGggatcctcactctccagagg	13	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88643557	T	T	88643557	3	4	9	1	0	0	0	0	1	0	0	0	17694	1116	39	1	28	1	ZC3H18	16	88643557	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	603889	88643557	1711196	15831	23982											
ZC3H18	124245	broad.mit.edu	37	chr16	88666168	88666168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacgcccggtattctgttcCatgttgacttctttcttctt	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88666168	A	A	88666168	1	1	9	0	1	0	0	0	0	0	0	0	17694	609	21	2		2	ZC3H18	16	88666168	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	22611	88666168	1688585	15832	23983											
ZC3H18	124245	broad.mit.edu	37	chr16	88697533	88697533	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccagctgtcaccccagtcCaagagctccagcaaggtcac	9	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88697533	A	A	88697533	2	1	9	1	0	0	0	0	0	0	0	1	17694	581	21	2		2	ZC3H18	16	88697533	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31365	88697533	1657220	15833	23984											
CTU2	348180	broad.mit.edu	37	chr16	88773583	88773583	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgcaaggaagcgcagccCgttgtggtgatacgagccgg	16	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88773583	A	A	88773583	2	1	9	1	0	0	0	0	0	0	0	1	4081	639	23	1		1	CTU2	16	88773583	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	76050	88773583	1581170	15834	23985											
CTU2	348180	broad.mit.edu	37	chr16	88776306	88776306	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggacgctgctcactgtgcGggtagcaggcggttccctca	14	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88776306	C	C	88776306	1	2	9	0	1	0	0	0	0	0	0	0	4081	1131	39	4		4	CTU2	16	88776306	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2723	88776306	1578447	15835	23986											
CTU2	348180	broad.mit.edu	37	chr16	88776708	88776708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgcgtgttcaccacccCgtgggcccgggctgctgggc	17	14	1	0	rs147078272	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88776708	A	A	88776708	1	1	9	0	1	0	0	0	0	0	0	0	4081	667	23	1		1	CTU2	16	88776708	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	402	88776708	1578045	15836	23987											
TRAPPC2L	51693	broad.mit.edu	37	chr16	88925066	88925066	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagcacccctacggagaacGagctgaagttccactacatg	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88925066	T	T	88925066	4	4	9	1	0	0	0	0	0	1	0	0	16583	1059	37	3	79	3	TRAPPC2L	16	88925066	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	148358	88925066	1429687	15837	23988											
ACSF3	197322	broad.mit.edu	37	chr16	89178534	89178534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagttctgaaacgccgcGgatcaatgtctttatggcag	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89178534	T	T	89178534	3	4	9	1	0	0	0	0	1	0	0	0	176	1116	39	1	867	1	ACSF3	16	89178534	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	253468	89178534	1176219	15838	23989											
ACSF3	197322	broad.mit.edu	37	chr16	89178571	89178571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgcctacaatatacacCaagctgatggagtactacga	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89178571	A	A	89178571	2	1	9	1	0	0	0	0	0	0	0	1	176	581	21	2		2	ACSF3	16	89178571	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	89178571	1176182	15839	23990											
CDH15	1013	broad.mit.edu	37	chr16	89245888	89245888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccctgtacccctggcgccGggcgcctgccctgagccgcg	13	20	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89245888	T	T	89245888	3	4	9	1	0	0	0	0	1	0	0	0	3130	1116	39	1	113	1	CDH15	16	89245888	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67317	89245888	1108865	15840	23991											
ZNF778	197320	broad.mit.edu	37	chr16	89293358	89293358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccagcaagcatgcactcGggacagatctcttgactaca	8	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89293358	T	T	89293358	3	4	9	1	0	0	0	0	1	0	0	0	18280	1116	39	1	596	1	ZNF778	16	89293358	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47470	89293358	1061395	15841	23992											
ZNF778	197320	broad.mit.edu	37	chr16	89293491	89293491	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaagctctaactcactcCatgggctgcgccacacctgt	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89293491	A	A	89293491	2	1	9	1	0	0	0	0	0	0	0	1	18280	581	21	2		2	ZNF778	16	89293491	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	133	89293491	1061262	15842	23993											
ANKRD11	29123	broad.mit.edu	37	chr16	89347060	89347060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggttttcagaggtgccccCgatcaggctagaggcaagcg	15	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89347060	A	A	89347060	3	1	9	1	0	0	0	0	1	0	0	0	639	652	23	1	2121	1	ANKRD11	16	89347060	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53569	89347060	1007693	15843	23994											
ANKRD11	29123	broad.mit.edu	37	chr16	89348021	89348021	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatggagggtccagcccCggcggtttcttagcaggaat	13	9	1	0	rs142939070		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89348021	A	A	89348021	2	1	9	1	0	0	0	0	0	0	0	1	639	639	23	1		1	ANKRD11	16	89348021	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	961	89348021	1006732	15844	23995											
ANKRD11	29123	broad.mit.edu	37	chr16	89348316	89348316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgttgctcatcttcactGggtcgcccttttctttctct	6	15	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89348316	T	T	89348316	3	4	9	1	0	0	0	0	1	0	0	0	639	1348	47	2	3377	2	ANKRD11	16	89348316	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	295	89348316	1006437	15845	23996											
ANKRD11	29123	broad.mit.edu	37	chr16	89350104	89350104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggcgtcctttctgtccCgcccggcctctgcggactct	11	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89350104	A	A	89350104	3	1	9	1	0	0	0	0	1	0	0	0	639	652	23	1	5165	1	ANKRD11	16	89350104	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1788	89350104	1004649	15846	23997											
ANKRD11	29123	broad.mit.edu	37	chr16	89350234	89350234	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtccctgtccttctttcGgaagaagggctctctgtagt	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89350234	T	T	89350234	2	4	9	1	0	0	0	0	0	0	0	1	639	1124	39	1		1	ANKRD11	16	89350234	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	130	89350234	1004519	15847	23998											
ANKRD11	29123	broad.mit.edu	37	chr16	89351987	89351987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggcctttttcgaactcGgagtccgtgttgttgccgtc	12	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89351987	T	T	89351987	2	4	9	1	0	0	0	0	0	0	0	1	639	1103	39	1		1	ANKRD11	16	89351987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1753	89351987	1002766	15848	23999											
ANKRD11	29123	broad.mit.edu	37	chr16	89352570	89352570	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgctgcgggttccctcCgtaccgcagcagcagcttca	11	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89352570	A	A	89352570	4	1	9	1	0	0	0	0	0	1	0	0	639	661	23	1	7246	1	ANKRD11	16	89352570	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	583	89352570	1002183	15849	24000											
SPG7	6687	broad.mit.edu	37	chr16	89603195	89603195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctcttgaccagctaccCtcccaggggaccatgaggaa	10	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89603195	A	A	89603195	1	1	9	0	1	0	0	0	0	0	0	0	15162	668	24	2		2	SPG7	16	89603195	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	250625	89603195	751558	15850	24001											
C16orf55	124045	broad.mit.edu	37	chr16	89724636	89724636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtaagtcccgggtctaacGgatgatccatatatttcagg	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89724636	T	T	89724636	1	4	9	0	1	0	0	0	0	0	0	0	1834	1131	39	1		1	C16orf55	16	89724636	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	121441	89724636	630117	15851	24002											
C16orf7	9605	broad.mit.edu	37	chr16	89782846	89782846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaatcccaggctcatccCacctcccatcttgtccatct	3	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89782846	A	A	89782846	1	1	9	0	1	0	0	0	0	0	0	0	1842	609	21	2		2	C16orf7	16	89782846	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58210	89782846	571907	15852	24003											
ZNF276	92822	broad.mit.edu	37	chr16	89788983	89788983	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcactgtcgcctctgccacGggaagttttcctcgagaagc	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89788983	C	C	89788983	3	2	9	1	0	0	0	0	1	0	0	0	17937	1116	39	4	256	4	ZNF276	16	89788983	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6137	89788983	565770	15853	24004											
FANCA	2175	broad.mit.edu	37	chr16	89806459	89806459	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcctcttctctaaacactCgaggattgctgcacaaacgt	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89806459	A	A	89806459	4	1	9	1	0	0	0	0	0	1	0	0	5719	893	31	3	510	3	FANCA	16	89806459	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17476	89806459	548294	15854	24005											
ZNF276	92822	broad.mit.edu	37	chr16	89806516	89806516	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtggtgctctgtaaacCgcaggagaccaaccctgaga	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89806516	A	A	89806516	1	1	9	0	1	0	0	0	0	0	0	0	17937	667	23	1		1	ZNF276	16	89806516	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	89806516	548237	15855	24006											
FANCA	2175	broad.mit.edu	37	chr16	89809307	89809307	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagctgagagccagtcCgggttgggtgctggggaggc	20	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89809307	A	A	89809307	2	1	9	1	0	0	0	0	0	0	0	1	5719	639	23	1		1	FANCA	16	89809307	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2791	89809307	545446	15856	24007											
FANCA	2175	broad.mit.edu	37	chr16	89818499	89818499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatatcttaatagcacgcGgcttaaatgaagtgaatgca	8	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89818499	T	T	89818499	1	4	9	0	1	0	0	0	0	0	0	0	5719	1131	39	1		1	FANCA	16	89818499	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9192	89818499	536254	15857	24008											
FANCA	2175	broad.mit.edu	37	chr16	89877304	89877304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcttaaaagtaacaacGggcaggtttcctcatctttg	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89877304	T	T	89877304	1	4	9	0	1	0	0	0	0	0	0	0	5719	1131	39	1		1	FANCA	16	89877304	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	58805	89877304	477449	15858	24009											
FANCA	2175	broad.mit.edu	37	chr16	89877376	89877376	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacagggtgactggtctcCgctggagccgtgcagatctg	15	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89877376	A	A	89877376	2	1	9	1	0	0	0	0	0	0	0	1	5719	639	23	1		1	FANCA	16	89877376	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	89877376	477377	15859	24010											
TCF25	22980	broad.mit.edu	37	chr16	89973641	89973641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcttcgttttatgtccCtttctgaaggacgtgaccac	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89973641	A	A	89973641	1	1	9	0	1	0	0	0	0	0	0	0	15815	696	24	2		2	TCF25	16	89973641	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96265	89973641	381112	15860	24011											
TUBB3	10381	broad.mit.edu	37	chr16	89986470	89986470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactcatcgtcctctgcccCgagcaccccacgtgcggctg	9	19	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89986470	A	A	89986470	2	1	9	1	0	0	0	0	0	0	0	1	16883	639	23	1		1	TUBB3	16	89986470	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12829	89986470	368283	15861	24012											
TUBB3	10381	broad.mit.edu	37	chr16	89999797	89999797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaggaggatggcaggcGggcacagaattcagaaagaa	16	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89999797	T	T	89999797	1	4	9	0	1	0	0	0	0	0	0	0	16883	1131	39	1		1	TUBB3	16	89999797	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13327	89999797	354956	15862	24013											
DEF8	54849	broad.mit.edu	37	chr16	90021524	90021524	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagctcctccctaggggatGggaggcaggaggtagcagct	16	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90021524	C	C	90021524	1	2	9	0	1	0	0	0	0	0	0	0	4420	1363	47	4		4	DEF8	16	90021524	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21727	90021524	333229	15863	24014											
DEF8	54849	broad.mit.edu	37	chr16	90027350	90027350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctagggtgttattacCgctgtcacagtaagtgcttg	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90027350	A	A	90027350	3	1	9	1	0	0	0	0	1	0	0	0	4420	652	23	1	811	1	DEF8	16	90027350	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5826	90027350	327403	15864	24015											
GAS8	2622	broad.mit.edu	37	chr16	90102106	90102106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagttcgaggtcagtttccCgtgtgctcattgtgtaggtg	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90102106	A	A	90102106	1	1	9	0	1	0	0	0	0	0	0	0	6313	667	23	1		1	GAS8	16	90102106	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	74756	90102106	252647	15865	24016											
GAS8	2622	broad.mit.edu	37	chr16	90104182	90104182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccagtgcacaaaagccCgtttgaaagtcagggagaaa	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90104182	A	A	90104182	3	1	9	1	0	0	0	0	1	0	0	0	6313	652	23	1	967	1	GAS8	16	90104182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2076	90104182	250571	15866	24017											
PRDM7	11105	broad.mit.edu	37	chr16	90128268	90128268	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtagaaggtgatgtccCatcaaaggcacagaagggat	12	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90128268	A	A	90128268	1	1	9	0	1	0	0	0	0	0	0	0	12567	609	21	2		2	PRDM7	16	90128268	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24086	90128268	226485	15867	24018											
GEMIN4	50628	broad.mit.edu	37	chr17	649453	649453	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagagaacttcatccagacGgtttctttgaggcatgacac	10	9	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	649453	T	T	649453	2	4	9	1	0	0	0	0	0	0	0	1	6394	1103	39	1		1	GEMIN4	17	649453	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08		649453	80545757	15868	24019											
INPP5K	51763	broad.mit.edu	37	chr17	1413161	1413161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcatcccttccaagctcCgtgctagggactctagagag	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1413161	A	A	1413161	1	1	9	0	1	0	0	0	0	0	0	0	7830	667	23	1		1	INPP5K	17	1413161	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	763708	1413161	79782049	15869	24020											
PRPF8	10594	broad.mit.edu	37	chr17	1565062	1565062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgaaagtgtgtgatacCtacatctgtctgtttggacc	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1565062	A	A	1565062	3	1	9	1	0	0	0	0	1	0	0	0	12681	681	24	2	3034	2	PRPF8	17	1565062	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	151901	1565062	79630148	15870	24021											
PRPF8	10594	broad.mit.edu	37	chr17	1579908	1579908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcccctcggcggatcCgttctcggttgtagtgggca	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1579908	A	A	1579908	3	1	9	1	0	0	0	0	1	0	0	0	12681	652	23	1	4840	1	PRPF8	17	1579908	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14846	1579908	79615302	15871	24022											
PRPF8	10594	broad.mit.edu	37	chr17	1580232	1580232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaatcctaccctaaagacGgatgtttacgcctccaagga	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1580232	T	T	1580232	1	4	9	0	1	0	0	0	0	0	0	0	12681	1131	39	1		1	PRPF8	17	1580232	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	324	1580232	79614978	15872	24023											
PRPF8	10594	broad.mit.edu	37	chr17	1584290	1584290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaatcttgtactcagtgcGgataggctgccggatgataa	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1584290	T	T	1584290	3	4	9	1	0	0	0	0	1	0	0	0	12681	1116	39	1	6230	1	PRPF8	17	1584290	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4058	1584290	79610920	15873	24024											
SERPINF1	5176	broad.mit.edu	37	chr17	1680559	1680559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgactcaggtggaacaccGggctggctttgagtggaacg	16	9	1	2	rs144198046		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1680559	T	T	1680559	3	4	9	1	0	0	0	0	1	0	0	0	14227	1116	39	1	1102	1	SERPINF1	17	1680559	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96269	1680559	79514651	15874	24025											
DPH1	1801	broad.mit.edu	37	chr17	1937116	1937116	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctctttgcctgtacCattgtggatatcttggaaag	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1937116	A	A	1937116	2	1	9	1	0	0	0	0	0	0	0	1	4759	581	21	2		2	DPH1	17	1937116	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	256557	1937116	79258094	15875	24026											
DPH1	1801	broad.mit.edu	37	chr17	1943600	1943600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagccatagccactgccCgctcagctaagtcctggggc	11	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1943600	A	A	1943600	3	1	9	1	0	0	0	0	1	0	0	0	4759	652	23	1	883	1	DPH1	17	1943600	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6484	1943600	79251610	15876	24027											
SMG6	23293	broad.mit.edu	37	chr17	2202438	2202438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggccctgggtacacacCattcgtagggcccactgggt	13	12	0	0	rs142614613		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2202438	A	A	2202438	3	1	9	1	0	0	0	0	1	0	0	0	14911	594	21	2	2722	2	SMG6	17	2202438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	258838	2202438	78992772	15877	24028											
TSR1	55720	broad.mit.edu	37	chr17	2236910	2236910	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctccctccattggatctGggataacctctgcttgcaag	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2236910	T	T	2236910	3	4	9	1	0	0	0	0	1	0	0	0	16789	1348	47	2	1372	2	TSR1	17	2236910	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34472	2236910	78958300	15878	24029											
TSR1	55720	broad.mit.edu	37	chr17	2239657	2239657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgcagatccccgacccCgatgccgtccgcctttatga	10	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2239657	A	A	2239657	3	1	9	1	0	0	0	0	1	0	0	0	16789	652	23	1	2409	1	TSR1	17	2239657	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2747	2239657	78955553	15879	24030											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2866678	2866678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagtggtcagactttacGggcactgccgggactaacgg	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2866678	T	T	2866678	1	4	9	0	1	0	0	0	0	0	0	0	13146	1131	39	1		1	RAP1GAP2	17	2866678	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	627021	2866678	78328532	15880	24031											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2888395	2888395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataccggtgactgtatccCgtggtttctcacttaggact	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2888395	A	A	2888395	1	1	9	0	1	0	0	0	0	0	0	0	13146	667	23	1		1	RAP1GAP2	17	2888395	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21717	2888395	78306815	15881	24032											
ASPA	443	broad.mit.edu	37	chr17	3402280	3402280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagactgtaccgtgtacccCgtgtttgtgaatgaggccgc	14	10	0	3	rs148081446	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3402280	A	A	3402280	2	1	9	1	0	0	0	0	0	0	0	1	1054	639	23	1		1	ASPA	17	3402280	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	513885	3402280	77792930	15882	24033											
P2RX5	5026	broad.mit.edu	37	chr17	3592976	3592976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaagacttgatgtttccCggcctggccaggagtcactc	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3592976	A	A	3592976	1	1	9	0	1	0	0	0	0	0	0	0	11437	667	23	1		1	P2RX5	17	3592976	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	190696	3592976	77602234	15883	24034											
P2RX5	5026	broad.mit.edu	37	chr17	3592996	3592996	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggcctggccaggagtcactCggtccctcaccaacctgagt	11	16	2	1	rs115390183	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3592996	A	A	3592996	1	1	9	0	1	0	0	0	0	0	0	0	11437	899	31	3		3	P2RX5	17	3592996	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	3592996	77602214	15884	24035											
ITGAE	3682	broad.mit.edu	37	chr17	3643082	3643082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttaatcgaggaaactgacGgctatgtccaactcactgag	11	9	1	2	rs28548075	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3643082	T	T	3643082	1	4	9	0	1	0	0	0	0	0	0	0	7955	1131	39	1		1	ITGAE	17	3643082	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	50086	3643082	77552128	15885	24036											
C17orf85	55421	broad.mit.edu	37	chr17	3725183	3725183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttagacatttcaccacGgaataccaactgaaggatta	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3725183	T	T	3725183	1	4	9	0	1	0	0	0	0	0	0	0	1905	1131	39	1		1	C17orf85	17	3725183	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	82101	3725183	77470027	15886	24037											
ZZEF1	23140	broad.mit.edu	37	chr17	3984706	3984706	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacgagagtgtccatgacCgccaggacttcactgatgtt	12	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3984706	A	A	3984706	2	1	9	1	0	0	0	0	0	0	0	1	18384	639	23	1		1	ZZEF1	17	3984706	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	259523	3984706	77210504	15887	24038											
ZZEF1	23140	broad.mit.edu	37	chr17	4005645	4005645	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcaacaaggaggttttcGggtccagacttatcttcttt	10	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4005645	T	T	4005645	2	4	9	1	0	0	0	0	0	0	0	1	18384	1103	39	1		1	ZZEF1	17	4005645	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20939	4005645	77189565	15888	24039											
UBE2G1	7326	broad.mit.edu	37	chr17	4200057	4200057	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttcattttaggaggtcGgaggggataatcttttggga	14	3	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4200057	T	T	4200057	2	4	9	1	0	0	0	0	0	0	0	1	16982	1124	39	1		1	UBE2G1	17	4200057	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	194412	4200057	76995153	15889	24040											
SPNS3	201305	broad.mit.edu	37	chr17	4391072	4391072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaccttctgcaaccttcGggcaggctgagcatctttcc	9	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4391072	T	T	4391072	1	4	9	0	1	0	0	0	0	0	0	0	15194	1131	39	1		1	SPNS3	17	4391072	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	191015	4391072	76804138	15890	24041											
SPNS2	124976	broad.mit.edu	37	chr17	4436630	4436630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccgcctgaagacccagcGggccgacccactggtgtgtg	15	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4436630	T	T	4436630	3	4	9	1	0	0	0	0	1	0	0	0	15193	1116	39	1	1211	1	SPNS2	17	4436630	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45558	4436630	76758580	15891	24042											
MYBBP1A	10514	broad.mit.edu	37	chr17	4446305	4446305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgttgcccttcaagaccCggagcaggtagagagaggcg	15	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4446305	A	A	4446305	3	1	9	1	0	0	0	0	1	0	0	0	10102	652	23	1	1259	1	MYBBP1A	17	4446305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9675	4446305	76748905	15892	24043											
GGT6	124975	broad.mit.edu	37	chr17	4463042	4463042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggttccgggcagccCgccagccttgttcctgcaga	13	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4463042	A	A	4463042	3	1	9	1	0	0	0	0	1	0	0	0	6427	652	23	1	1339	1	GGT6	17	4463042	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16737	4463042	76732168	15893	24044											
ALOX15	246	broad.mit.edu	37	chr17	4542248	4542248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatattcagaattaaccCgtccttccagtttccccacc	4	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4542248	A	A	4542248	3	1	9	1	0	0	0	0	1	0	0	0	538	652	23	1	1593	1	ALOX15	17	4542248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79206	4542248	76652962	15894	24045											
VMO1	284013	broad.mit.edu	37	chr17	4689187	4689187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatgtaatagagggtaaGggacataccatcaccccaag	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4689187	T	T	4689187	1	4	9	0	1	0	0	0	0	0	0	0	17304	1015	35	2		2	VMO1	17	4689187	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	146939	4689187	76506023	15895	24046											
CHRNE	1145	broad.mit.edu	37	chr17	4805622	4805622	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcggtaatcctgccaatcCtaaggggtgggggatggaag	16	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4805622	A	A	4805622	5	1	9	1	0	0	0	0	0	0	1	0	3426	695	24	2	1283	2	CHRNE	17	4805622	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	116435	4805622	76389588	15896	24047											
ENO3	2027	broad.mit.edu	37	chr17	4860192	4860192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaactcatgaggtacagcGggaacagtgggcctgggcat	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4860192	T	T	4860192	1	4	9	0	1	0	0	0	0	0	0	0	5165	1131	39	1		1	ENO3	17	4860192	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	54570	4860192	76335018	15897	24048											
USP6	9098	broad.mit.edu	37	chr17	5035720	5035720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctcctgtgactgcacGggaggcgaaggtaagagcct	15	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5035720	T	T	5035720	3	4	9	1	0	0	0	0	1	0	0	0	17213	1116	39	1	195	1	USP6	17	5035720	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	175528	5035720	76159490	15898	24049											
USP6	9098	broad.mit.edu	37	chr17	5038589	5038589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataacccggtgagtattccCggcagtgaggttcccaggct	12	11	0	2	rs147038043	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5038589	A	A	5038589	1	1	9	0	1	0	0	0	0	0	0	0	17213	667	23	1		1	USP6	17	5038589	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2869	5038589	76156621	15899	24050											
MIS12	79003	broad.mit.edu	37	chr17	5392690	5392690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgttggcagagatcatGggactagtgattttagggag	14	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5392690	T	T	5392690	3	4	9	1	0	0	0	0	1	0	0	0	9687	1348	47	2	510	2	MIS12	17	5392690	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	354101	5392690	75802520	15900	24051											
WSCD1	23302	broad.mit.edu	37	chr17	5998451	5998451	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctaccgcggatgcttcCgactgccagagaacatcaca	8	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5998451	A	A	5998451	2	1	9	1	0	0	0	0	0	0	0	1	17533	644	23	1		1	WSCD1	17	5998451	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	605761	5998451	75196759	15901	24052											
WSCD1	23302	broad.mit.edu	37	chr17	6023697	6023697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggactggctcaagtacGggaagcggctgctggtggtg	17	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6023697	T	T	6023697	3	4	9	1	0	0	0	0	1	0	0	0	17533	1116	39	1	1474	1	WSCD1	17	6023697	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25246	6023697	75171513	15902	24053											
ALOX12	239	broad.mit.edu	37	chr17	6903715	6903715	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattccagccaacgtgatcCgaggagagaagcaatacctg	11	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6903715	A	A	6903715	2	1	9	1	0	0	0	0	0	0	0	1	536	644	23	1		1	ALOX12	17	6903715	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	880018	6903715	74291495	15903	24054											
BCL6B	255877	broad.mit.edu	37	chr17	6930059	6930059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctcaatctgcggagccCgttttaaccggccagcaaac	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6930059	A	A	6930059	3	1	9	1	0	0	0	0	1	0	0	0	1382	652	23	1	1112	1	BCL6B	17	6930059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26344	6930059	74265151	15904	24055											
BCL6B	255877	broad.mit.edu	37	chr17	6930282	6930282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaggtggcacatctgcGggcgcacgtgctgatccaca	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6930282	T	T	6930282	3	4	9	1	0	0	0	0	1	0	0	0	1382	1116	39	1	1225	1	BCL6B	17	6930282	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	223	6930282	74264928	15905	24056											
DVL2	1856	broad.mit.edu	37	chr17	7133723	7133723	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactggaggggccatctcGggttggggattatctgagga	18	6	2	1	rs147259391		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7133723	T	T	7133723	2	4	9	1	0	0	0	0	0	0	0	1	4876	1103	39	1		1	DVL2	17	7133723	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	203441	7133723	74061487	15906	24057											
GABARAP	11337	broad.mit.edu	37	chr17	7144691	7144691	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacccattgtggcactggtGggtggaatgacattgttgac	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7144691	T	T	7144691	2	4	9	1	0	0	0	0	0	0	0	1	6212	1335	47	2		2	GABARAP	17	7144691	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10968	7144691	74050519	15907	24058											
C17orf81	23587	broad.mit.edu	37	chr17	7161978	7161978	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgtagagtcccagccCtactccgatcctcatatacc	5	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7161978	A	A	7161978	2	1	9	1	0	0	0	0	0	0	0	1	1903	668	24	2		2	C17orf81	17	7161978	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17287	7161978	74033232	15908	24059											
C17orf81	23587	broad.mit.edu	37	chr17	7162001	7162001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgatcctcatataccccCggtatctaagaatgccaagg	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7162001	A	A	7162001	3	1	9	1	0	0	0	0	1	0	0	0	1903	666	23	1	756	1	C17orf81	17	7162001	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23	7162001	74033209	15909	24060											
NEURL4	84461	broad.mit.edu	37	chr17	7224145	7224145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgattgtagctggccaccCgtgtggccgtacggttccca	12	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7224145	A	A	7224145	3	1	9	1	0	0	0	0	1	0	0	0	10442	652	23	1	1266	1	NEURL4	17	7224145	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62144	7224145	73971065	15910	24061											
TMEM95	339168	broad.mit.edu	37	chr17	7259361	7259361	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcagctctctgtcccccCgcctgccgtgagtaggaaag	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7259361	A	A	7259361	2	1	9	1	0	0	0	0	0	0	0	1	16346	639	23	1		1	TMEM95	17	7259361	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35216	7259361	73935849	15911	24062											
C17orf74	201243	broad.mit.edu	37	chr17	7329106	7329106	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactcctgctgctgggcctCatcgttcttgtcaacattgg	9	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7329106	A	A	7329106	2	1	9	1	0	0	0	0	0	0	0	1	1896	813	29	3		3	C17orf74	17	7329106	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	69745	7329106	73866104	15912	24063											
C17orf74	201243	broad.mit.edu	37	chr17	7329355	7329355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagacaagatgattgattGggctactcagaaaagtaagt	10	5	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7329355	T	T	7329355	3	4	9	1	0	0	0	0	1	0	0	0	1896	1357	47	2	188	2	C17orf74	17	7329355	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	249	7329355	73865855	15913	24064											
ZBTB4	57659	broad.mit.edu	37	chr17	7365427	7365427	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggaagggaagggccccCgcacccttctcatcaggtag	14	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7365427	A	A	7365427	2	1	9	1	0	0	0	0	0	0	0	1	17667	639	23	1		1	ZBTB4	17	7365427	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	36072	7365427	73829783	15914	24065											
POLR2A	5430	broad.mit.edu	37	chr17	7412910	7412910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagagaagctggtgctcCgtattcgcatcatgaacagc	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7412910	A	A	7412910	3	1	9	1	0	0	0	0	1	0	0	0	12309	652	23	1	3858	1	POLR2A	17	7412910	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47483	7412910	73782300	15915	24066											
EIF4A1	1973	broad.mit.edu	37	chr17	7476266	7476266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggggtagctgagaggccCaccagggttgcgggagaaac	18	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7476266	A	A	7476266	1	1	9	0	1	0	0	0	0	0	0	0	5066	609	21	2		2	EIF4A1	17	7476266	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	63356	7476266	73718944	15916	24067											
EIF4A1	1973	broad.mit.edu	37	chr17	7480687	7480687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctgtcagccacaatgcCttctgatgtgcttgaggtga	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7480687	A	A	7480687	3	1	9	1	0	0	0	0	1	0	0	0	5066	681	24	2	676	2	EIF4A1	17	7480687	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4421	7480687	73714523	15917	24068											
SOX15	6665	broad.mit.edu	37	chr17	7491673	7491673	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaggatgaggcccgtccCgtgaggtctgcgtccatgag	16	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7491673	A	A	7491673	1	1	9	0	1	0	0	0	0	0	0	0	15060	667	23	1		1	SOX15	17	7491673	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	10986	7491673	73703537	15918	24069											
FXR2	9513	broad.mit.edu	37	chr17	7495857	7495857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgatagagccatcagtcCgattaccacggttacggcgg	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7495857	A	A	7495857	3	1	9	1	0	0	0	0	1	0	0	0	6176	652	23	1	143	1	FXR2	17	7495857	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4184	7495857	73699353	15919	24070											
FXR2	9513	broad.mit.edu	37	chr17	7504818	7504818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatcacccagcagagatgctCgcttcacaggggcttctgtg	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7504818	A	A	7504818	3	1	9	1	0	0	0	0	1	0	0	0	6176	884	31	3	1396	3	FXR2	17	7504818	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8961	7504818	73690392	15920	24071											
SHBG	6462	broad.mit.edu	37	chr17	7535079	7535079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccgaggtagatttcctcGgagtctatttttcccaccct	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7535079	T	T	7535079	1	4	9	0	1	0	0	0	0	0	0	0	14382	1131	39	1		1	SHBG	17	7535079	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30261	7535079	73660131	15921	24072											
SHBG	6462	broad.mit.edu	37	chr17	7535243	7535243	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccttctctttggacctGggactcaagcaggcagcagg	14	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7535243	T	T	7535243	2	4	9	1	0	0	0	0	0	0	0	1	14382	1335	47	2		2	SHBG	17	7535243	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	164	7535243	73659967	15922	24073											
TP53	7157	broad.mit.edu	37	chr17	7578514	7578514	+	Frame_Shift_Del	DEL	T	-	-													acagctgcacagggcaggtcTtggccagttggcaaaacatc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7578514	-	-	7578514	7	5	9	1	0	1	0	1	0	0	0	0	16505	1609	56	0	882	0	TP53	17	7578514	Frame_Shift_Del	DEL	T	TCGA-05-4396-01A-21D-1855-08	43271	7578514	73616696	15923	24074											
WRAP53	55135	broad.mit.edu	37	chr17	7592324	7592324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgaagaagaagcgaacGggccagagttggggtctgga	16	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7592324	T	T	7592324	3	4	9	1	0	0	0	0	1	0	0	0	17527	1116	39	1	360	1	WRAP53	17	7592324	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13810	7592324	73602886	15924	24075											
DNAH2	146754	broad.mit.edu	37	chr17	7704864	7704864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggctgtgtctgtgcacGgaatttacagcctctccaaa	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7704864	T	T	7704864	1	4	9	0	1	0	0	0	0	0	0	0	4642	1131	39	1		1	DNAH2	17	7704864	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	112540	7704864	73490346	15925	24076											
DNAH2	146754	broad.mit.edu	37	chr17	7704915	7704915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactggatccgccagtacCcagccttggtgaactgcaca	11	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7704915	A	A	7704915	3	1	9	1	0	0	0	0	1	0	0	0	4642	623	22	2	8941	2	DNAH2	17	7704915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51	7704915	73490295	15926	24077											
DNAH2	146754	broad.mit.edu	37	chr17	7736733	7736733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctattactatcccaaccGggcaggcagctcagaccgag	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7736733	T	T	7736733	3	4	9	1	0	0	0	0	1	0	0	0	4642	1116	39	1	13504	1	DNAH2	17	7736733	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31818	7736733	73458477	15927	24078											
KDM6B	23135	broad.mit.edu	37	chr17	7752362	7752362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctagaagagatcagccGggcttgcgagacccttgtgg	16	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7752362	T	T	7752362	3	4	9	1	0	0	0	0	1	0	0	0	8208	1116	39	1	2786	1	KDM6B	17	7752362	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15629	7752362	73442848	15928	24079											
ALOX12B	242	broad.mit.edu	37	chr17	7990713	7990713	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatggagtcccgtgttccCgacaagaggtcggtgcctgt	15	10	0	2	rs149687727		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7990713	A	A	7990713	2	1	9	1	0	0	0	0	0	0	0	1	537	639	23	1		1	ALOX12B	17	7990713	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	238351	7990713	73204497	15929	24080											
PER1	5187	broad.mit.edu	37	chr17	8053850	8053850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcctctagactcatgccCgttggactcattgccacttg	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8053850	A	A	8053850	3	1	9	1	0	0	0	0	1	0	0	0	11823	652	23	1	3785	1	PER1	17	8053850	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63137	8053850	73141360	15930	24081											
C17orf68	80169	broad.mit.edu	37	chr17	8141675	8141675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggacaccattcttgtcaGgatctgaggcatctgatctc	9	11	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8141675	T	T	8141675	1	4	9	0	1	0	0	0	0	0	0	0	1892	1015	35	2		2	C17orf68	17	8141675	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	87825	8141675	73053535	15931	24082											
ARHGEF15	22899	broad.mit.edu	37	chr17	8219166	8219166	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgctgtggggcctttctcGgtgtatgtggattatgtgcg	15	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8219166	T	T	8219166	2	4	9	1	0	0	0	0	0	0	0	1	900	1103	39	1		1	ARHGEF15	17	8219166	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	77491	8219166	72976044	15932	24083											
KRBA2	124751	broad.mit.edu	37	chr17	8273427	8273427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatcagtttctctgtgccCtgtacagagatcacatcata	6	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8273427	A	A	8273427	3	1	9	1	0	0	0	0	1	0	0	0	8511	680	24	2	978	2	KRBA2	17	8273427	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54261	8273427	72921783	15933	24084											
MYH10	4628	broad.mit.edu	37	chr17	8390762	8390762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacatacctggagcttgcGgagctgcttaatcacctcat	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8390762	T	T	8390762	3	4	9	1	0	0	0	0	1	0	0	0	10124	1116	39	1	1020	1	MYH10	17	8390762	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	117335	8390762	72804448	15934	24085											
MYH10	4628	broad.mit.edu	37	chr17	8449930	8449930	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccggggagtcaggatggcccGagtaaactccatcacattca	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8449930	T	T	8449930	2	4	9	1	0	0	0	0	0	0	0	1	10124	1057	37	3		3	MYH10	17	8449930	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	59168	8449930	72745280	15935	24086											
MYH10	4628	broad.mit.edu	37	chr17	8452041	8452041	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctttgtcttgctgtccCggaataggaatatagccatt	8	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8452041	A	A	8452041	2	1	9	1	0	0	0	0	0	0	0	1	10124	639	23	1		1	MYH10	17	8452041	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2111	8452041	72743169	15936	24087											
MYH10	4628	broad.mit.edu	37	chr17	8526323	8526323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccttggaaaacttaggtGggttcatcttctgaatatca	8	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8526323	T	T	8526323	3	4	9	1	0	0	0	0	1	0	0	0	10124	1348	47	2	5848	2	MYH10	17	8526323	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	74282	8526323	72668887	15937	24088											
MYH10	4628	broad.mit.edu	37	chr17	8526404	8526404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccataacttcatctcccCgttcttctttgatactagct	3	15	4	1	rs142113205		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8526404	A	A	8526404	3	1	9	1	0	0	0	0	1	0	0	0	10124	652	23	1	5929	1	MYH10	17	8526404	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81	8526404	72668806	15938	24089											
STX8	9482	broad.mit.edu	37	chr17	9281904	9281904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtccaccatgtttaccCgcctggtttcattgcgaagt	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9281904	A	A	9281904	3	1	9	1	0	0	0	0	1	0	0	0	15469	652	23	1	110	1	STX8	17	9281904	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	755500	9281904	71913306	15939	24090											
GLP2R	9340	broad.mit.edu	37	chr17	9739702	9739702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaggcatattttgtaacGggacatttgatcagtacgtg	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9739702	T	T	9739702	3	4	9	1	0	0	0	0	1	0	0	0	6517	1116	39	1	302	1	GLP2R	17	9739702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	457798	9739702	71455508	15940	24091											
MYH13	8735	broad.mit.edu	37	chr17	10216635	10216635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggtcacagtcgtggcGggaggactgcagggcgtgcg	19	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10216635	T	T	10216635	3	4	9	1	0	0	0	0	1	0	0	0	10126	1116	39	1	1843	1	MYH13	17	10216635	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	476933	10216635	70978575	15941	24092											
MYH13	8735	broad.mit.edu	37	chr17	10243710	10243710	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcccttcttgcttcctcCggagtcgcctggagacagac	10	17	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10243710	A	A	10243710	4	1	9	1	0	0	0	0	0	1	0	0	10126	661	23	1	4013	1	MYH13	17	10243710	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27075	10243710	70951500	15942	24093											
MYH8	4626	broad.mit.edu	37	chr17	10298464	10298464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaccttcaggattccttGggtgttcctgtagttcctta	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10298464	T	T	10298464	3	4	9	1	0	0	0	0	1	0	0	0	10135	1357	47	2	893	2	MYH8	17	10298464	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54754	10298464	70896746	15943	24094											
MYH8	4626	broad.mit.edu	37	chr17	10307643	10307643	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcattcagaatatggagtacTcacagattgaacctggagtt	10	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10307643	A	A	10307643	1	1	9	0	1	0	0	0	0	0	0	0	10135	1566	54	5		5	MYH8	17	10307643	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	9179	10307643	70887567	15944	24095											
MYH8	4626	broad.mit.edu	37	chr17	10314103	10314103	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaaaccgaccttctcaatGagctcaatgcaggcagccag	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10314103	T	T	10314103	2	4	9	1	0	0	0	0	0	0	0	1	10135	1277	45	3		3	MYH8	17	10314103	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6460	10314103	70881107	15945	24096											
MYH8	4626	broad.mit.edu	37	chr17	10323356	10323356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccaccttcagtctttacGgttactttccctccttcttt	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10323356	T	T	10323356	2	4	9	1	0	0	0	0	0	0	0	1	10135	1103	39	1		1	MYH8	17	10323356	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9253	10323356	70871854	15946	24097											
MYH4	4622	broad.mit.edu	37	chr17	10348405	10348405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccatgttcttcttcatcCgctccaggtgggcgctggtg	12	13	3	0	rs146221622		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10348405	A	A	10348405	3	1	9	1	0	0	0	0	1	0	0	0	10131	652	23	1	481	1	MYH4	17	10348405	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25049	10348405	70846805	15947	24098											
MYH4	4622	broad.mit.edu	37	chr17	10356549	10356549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatctgcaggtcatccaGggtctgctggtgggcctcct	12	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10356549	T	T	10356549	3	4	9	1	0	0	0	0	1	0	0	0	10131	991	35	2	2856	2	MYH4	17	10356549	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8144	10356549	70838661	15948	24099											
MYH4	4622	broad.mit.edu	37	chr17	10357037	10357037	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaatgtctttcttgagctCtgaacattcatcctccagtt	5	11	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10357037	A	A	10357037	4	1	9	1	0	0	0	0	0	1	0	0	10131	922	32	3	3034	3	MYH4	17	10357037	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	488	10357037	70838173	15949	24100											
MYH4	4622	broad.mit.edu	37	chr17	10368907	10368907	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtgacacagaagaggccCgagtaggtctgtgggaaagg	17	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10368907	A	A	10368907	2	1	9	1	0	0	0	0	0	0	0	1	10131	639	23	1		1	MYH4	17	10368907	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11870	10368907	70826303	15950	24101											
MYH1	4619	broad.mit.edu	37	chr17	10406205	10406205	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatggtttcatccagaccCgccatctcttctgtgaggtt	9	12	3	2	rs138112513	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10406205	A	A	10406205	2	1	9	1	0	0	0	0	0	0	0	1	10123	639	23	1		1	MYH1	17	10406205	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	37298	10406205	70789005	15951	24102											
MYH1	4619	broad.mit.edu	37	chr17	10409361	10409361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcattggggatgatgcacCgcacaaagtgggggtgagtg	16	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10409361	A	A	10409361	3	1	9	1	0	0	0	0	1	0	0	0	10123	652	23	1	3887	1	MYH1	17	10409361	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3156	10409361	70785849	15952	24103											
MYH1	4619	broad.mit.edu	37	chr17	10415207	10415207	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccaatgaagtactgcctGggctgcttggtgtccagctg	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10415207	T	T	10415207	2	4	9	1	0	0	0	0	0	0	0	1	10123	1335	47	2		2	MYH1	17	10415207	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5846	10415207	70780003	15953	24104											
MYH1	4619	broad.mit.edu	37	chr17	10418209	10418209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagatagactgattctccCgatctagaagaaaaacagtg	8	8	3	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10418209	A	A	10418209	3	1	9	1	0	0	0	0	1	0	0	0	10123	652	23	1	5450	1	MYH1	17	10418209	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3002	10418209	70777001	15954	24105											
MYH2	4620	broad.mit.edu	37	chr17	10440816	10440816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggtgtctgttgccttaGggaacatgcactcctcttcc	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10440816	T	T	10440816	3	4	9	1	0	0	0	0	1	0	0	0	10129	1000	35	2	4294	2	MYH2	17	10440816	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22607	10440816	70754394	15955	24106											
MYH2	4620	broad.mit.edu	37	chr17	10442632	10442632	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catccacaggaacatcttctCgtagacggctttggccagag	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10442632	A	A	10442632	4	1	9	1	0	0	0	0	0	1	0	0	10129	893	31	3	4627	3	MYH2	17	10442632	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1816	10442632	70752578	15956	24107											
MYH3	4621	broad.mit.edu	37	chr17	10535909	10535909	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatcttcttcttgagccGgatggcttcattcctgctcc	7	15	4	1	rs141020227		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10535909	T	T	10535909	2	4	9	1	0	0	0	0	0	0	0	1	10130	1115	39	1		1	MYH3	17	10535909	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	93277	10535909	70659301	15957	24108											
DNAH9	1770	broad.mit.edu	37	chr17	11572453	11572453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagagctagttttctatcCgtctctggagtctggagtga	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11572453	A	A	11572453	3	1	9	1	0	0	0	0	1	0	0	0	4648	652	23	1	2866	1	DNAH9	17	11572453	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1036544	11572453	69622757	15958	24109											
DNAH9	1770	broad.mit.edu	37	chr17	11572723	11572723	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccagatttggcaaacatgCggcgcacactcatggagaga	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11572723	T	T	11572723	3	4	9	1	0	0	0	0	1	0	0	0	4648	759	27	4	3031	4	DNAH9	17	11572723	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	270	11572723	69622487	15959	24110											
DNAH9	1770	broad.mit.edu	37	chr17	11645665	11645665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgtacaaccaagcacCgtgcaacagccccagctctg	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11645665	A	A	11645665	1	1	9	0	1	0	0	0	0	0	0	0	4648	667	23	1		1	DNAH9	17	11645665	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	72942	11645665	69549545	15960	24111											
DNAH9	1770	broad.mit.edu	37	chr17	11737937	11737937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaactcctgataagtccCgtgcttctccaatgcaggtg	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11737937	A	A	11737937	1	1	9	0	1	0	0	0	0	0	0	0	4648	667	23	1		1	DNAH9	17	11737937	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	92272	11737937	69457273	15961	24112											
DNAH9	1770	broad.mit.edu	37	chr17	11775167	11775167	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaatgggaagacatcacGgtcataattcgcatcctctg	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11775167	T	T	11775167	1	4	9	0	1	0	0	0	0	0	0	0	4648	1131	39	1		1	DNAH9	17	11775167	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	37230	11775167	69420043	15962	24113											
MYOCD	93649	broad.mit.edu	37	chr17	12661457	12661457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttttcaattccatcccCaactttttctaagtcaagtt	3	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12661457	A	A	12661457	3	1	9	1	0	0	0	0	1	0	0	0	10181	594	21	2	2304	2	MYOCD	17	12661457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	886290	12661457	68533753	15963	24114											
RICH2	9912	broad.mit.edu	37	chr17	12812338	12812338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaaatctaagtaagtccCcatccgtgaaaaggggacta	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12812338	A	A	12812338	1	1	9	0	1	0	0	0	0	0	0	0	13466	638	22	2		2	RICH2	17	12812338	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	150881	12812338	68382872	15964	24115											
ELAC2	60528	broad.mit.edu	37	chr17	12919123	12919123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtacacactttggaagccCggtttcctttaaagtaagaa	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12919123	A	A	12919123	3	1	9	1	0	0	0	0	1	0	0	0	5089	652	23	1	2170	1	ELAC2	17	12919123	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	106785	12919123	68276087	15965	24116											
HS3ST3B1	9953	broad.mit.edu	37	chr17	14248989	14248989	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggctatgtaccttaccCacgtggcttatctattgaca	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14248989	A	A	14248989	1	1	9	0	1	0	0	0	0	0	0	0	7433	609	21	2		2	HS3ST3B1	17	14248989	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1329866	14248989	66946221	15966	24117											
TRIM16	10626	broad.mit.edu	37	chr17	15501805	15501805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttggtaacctgtgggtcGggggaaacttcttagaaaat	12	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15501805	T	T	15501805	1	4	9	0	1	0	0	0	0	0	0	0	16615	1131	39	1		1	TRIM16	17	15501805	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1252816	15501805	65693405	15967	24118											
TRIM16	10626	broad.mit.edu	37	chr17	15516062	15516062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcacacgcatgctcttccCgtcatctaccattttaggaa	5	13	4	0	rs151267443	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15516062	A	A	15516062	3	1	9	1	0	0	0	0	1	0	0	0	16615	652	23	1		1	TRIM16	17	15516062	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14257	15516062	65679148	15968	24119											
NCOR1	9611	broad.mit.edu	37	chr17	15964781	15964781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtccgaggcaatttgccGggtgatgatcacgtctatga	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15964781	T	T	15964781	2	4	9	1	0	0	0	0	0	0	0	1	10330	1115	39	1		1	NCOR1	17	15964781	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	448719	15964781	65230429	15969	24120											
NCOR1	9611	broad.mit.edu	37	chr17	15964985	15964985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctcttctccacctccaGggttttctgctctagctgct	7	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15964985	T	T	15964985	3	4	9	1	0	0	0	0	1	0	0	0	10330	991	35	2	1751	2	NCOR1	17	15964985	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	204	15964985	65230225	15970	24121											
NCOR1	9611	broad.mit.edu	37	chr17	15978926	15978926	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcttcctctctgcctttctCaggactgctgtcttcaatgg	8	13	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15978926	A	A	15978926	4	1	9	1	0	0	0	0	0	1	0	0	10330	835	29	3	3810	3	NCOR1	17	15978926	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13941	15978926	65216284	15971	24122											
NCOR1	9611	broad.mit.edu	37	chr17	15983977	15983977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagatagatcccactgacGgcttgggtgtttcttgagtg	14	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15983977	T	T	15983977	3	4	9	1	0	0	0	0	1	0	0	0	10330	1116	39	1	4172	1	NCOR1	17	15983977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5051	15983977	65211233	15972	24123											
MPRIP	23164	broad.mit.edu	37	chr17	17079750	17079750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattttaggtcttattgcGggtaaaggaatcggaaatac	11	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17079750	T	T	17079750	3	4	9	1	0	0	0	0	1	0	0	0	9837	1116	39	1	2798	1	MPRIP	17	17079750	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1095773	17079750	64115460	15973	24124											
NT5M	56953	broad.mit.edu	37	chr17	17209876	17209876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaggccatcagcatttGggagtcaaagaatttctttt	11	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17209876	T	T	17209876	3	4	9	1	0	0	0	0	1	0	0	0	10789	1357	47	2	293	2	NT5M	17	17209876	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	130126	17209876	63985334	15974	24125											
RAI1	10743	broad.mit.edu	37	chr17	17701061	17701061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccttctcacccttcgtgcGggtggagaagcgagacgcgt	14	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17701061	T	T	17701061	3	4	9	1	0	0	0	0	1	0	0	0	13115	1116	39	1	4801	1	RAI1	17	17701061	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	491185	17701061	63494149	15975	24126											
DRG2	1819	broad.mit.edu	37	chr17	18003714	18003714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggagtctgtgggcatcCgcctcaacaagcacaagcct	11	13	2	0	rs147529975		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18003714	A	A	18003714	3	1	9	1	0	0	0	0	1	0	0	0	4802	652	23	1	527	1	DRG2	17	18003714	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	302653	18003714	63191496	15976	24127											
MYO15A	51168	broad.mit.edu	37	chr17	18034052	18034052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggagagagtggtggtcGgtcctgctagtgactccatt	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18034052	T	T	18034052	1	4	9	0	1	0	0	0	0	0	0	0	10157	1131	39	1		1	MYO15A	17	18034052	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30338	18034052	63161158	15977	24128											
ALKBH5	54890	broad.mit.edu	37	chr17	18088270	18088270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccagttcaagcctattcGggtgtcggaaccagtgcttt	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18088270	T	T	18088270	3	4	9	1	0	0	0	0	1	0	0	0	530	1116	39	1	715	1	ALKBH5	17	18088270	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	54218	18088270	63106940	15978	24129											
FLII	2314	broad.mit.edu	37	chr17	18158564	18158564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattcttcagactgttggctCgggccacgatggcctgggaa	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18158564	A	A	18158564	3	1	9	1	0	0	0	0	1	0	0	0	5982	884	31	3	3657	3	FLII	17	18158564	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70294	18158564	63036646	15979	24130											
SMCR8	140775	broad.mit.edu	37	chr17	18221064	18221064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgcttatgagctggaccCgagccacctgctggctagcc	11	16	0	1	rs145017487	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18221064	A	A	18221064	3	1	9	1	0	0	0	0	1	0	0	0	14906	652	23	1	1963	1	SMCR8	17	18221064	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62500	18221064	62974146	15980	24131											
SHMT1	6470	broad.mit.edu	37	chr17	18257053	18257053	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggcctccaaaactgctcGgctggcgaaattctccgagg	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18257053	T	T	18257053	2	4	9	1	0	0	0	0	0	0	0	1	14398	1124	39	1		1	SHMT1	17	18257053	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35989	18257053	62938157	15981	24132											
TBC1D28	254272	broad.mit.edu	37	chr17	18539795	18539795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaagttgcaacaccccCgagagacacccatgcctgtg	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18539795	A	A	18539795	3	1	9	1	0	0	0	0	1	0	0	0	15736	652	23	1	23	1	TBC1D28	17	18539795	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	282742	18539795	62655415	15982	24133											
TRIM16L	147166	broad.mit.edu	37	chr17	18630970	18630970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgctgagccaggccaacGgtatcaaggcccacctggag	13	14	1	1	rs145703700	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18630970	T	T	18630970	3	4	9	1	0	0	0	0	1	0	0	0	16616	1116	39	1	102	1	TRIM16L	17	18630970	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91175	18630970	62564240	15983	24134											
FBXW10	10517	broad.mit.edu	37	chr17	18673325	18673325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttacaatttcctcaacGggaactgtatgaaggtgtta	9	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18673325	T	T	18673325	3	4	9	1	0	0	0	0	1	0	0	0	5820	1116	39	1	1975	1	FBXW10	17	18673325	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42355	18673325	62521885	15984	24135											
FBXW10	10517	broad.mit.edu	37	chr17	18675791	18675791	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacataaagtggcagtatgcCgtggaaaaaacgaaacaaaa	9	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18675791	A	A	18675791	2	1	9	1	0	0	0	0	0	0	0	1	5820	639	23	1		1	FBXW10	17	18675791	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2466	18675791	62519419	15985	24136											
FAM18B	51030	broad.mit.edu	37	chr17	18694276	18694276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcgtctatcttctctgtGggttgctcagcagcagcttt	9	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18694276	T	T	18694276	3	4	9	1	0	0	0	0	1	0	0	0	5566	1348	47	2	173	2	FAM18B	17	18694276	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18485	18694276	62500934	15986	24137											
MAPK7	5598	broad.mit.edu	37	chr17	19286338	19286338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacatgcacctgtgggatGggtgagggtccagcctaggc	17	9	0	2	rs66495268		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19286338	T	T	19286338	1	4	9	0	1	0	0	0	0	0	0	0	9374	1363	47	2		2	MAPK7	17	19286338	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	592062	19286338	61908872	15987	24138											
SLC47A1	55244	broad.mit.edu	37	chr17	19470344	19470344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagaatatgaagtgctcGggagatgggagtgtttcaag	15	5	1	3	rs114637940	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19470344	T	T	19470344	1	4	9	0	1	0	0	0	0	0	0	0	14761	1131	39	1		1	SLC47A1	17	19470344	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	184006	19470344	61724866	15988	24139											
ALDH3A2	224	broad.mit.edu	37	chr17	19575097	19575097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttttctcatcagcgtcCctgtttattaaaaagtttaa	4	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19575097	A	A	19575097	3	1	9	1	0	0	0	0	1	0	0	0	498	623	22	2	1305	2	ALDH3A2	17	19575097	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	104753	19575097	61620113	15989	24140											
CYTSB	92521	broad.mit.edu	37	chr17	20013645	20013645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttattgtatcttgactgctGggcacatagcccagctccca	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20013645	T	T	20013645	1	4	9	0	1	0	0	0	0	0	0	0	4243	1363	47	2		2	CYTSB	17	20013645	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	438548	20013645	61181565	15990	24141											
CYTSB	92521	broad.mit.edu	37	chr17	20108085	20108085	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactttcagaaagagctttcCgatctagaggaagaaaaccg	9	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20108085	A	A	20108085	2	1	9	1	0	0	0	0	0	0	0	1	4243	639	23	1		1	CYTSB	17	20108085	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	94440	20108085	61087125	15991	24142											
CYTSB	92521	broad.mit.edu	37	chr17	20137079	20137079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaggtttcacagtgttcCctactgaaacagtagtgagg	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20137079	A	A	20137079	1	1	9	0	1	0	0	0	0	0	0	0	4243	638	22	2		2	CYTSB	17	20137079	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	28994	20137079	61058131	15992	24143											
USP22	23326	broad.mit.edu	37	chr17	20922432	20922432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgatctttctccttttcGggttgtgcttcagcagttca	10	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20922432	T	T	20922432	3	4	9	1	0	0	0	0	1	0	0	0	17180	1116	39	1	1132	1	USP22	17	20922432	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	785353	20922432	60272778	15993	24144											
TMEM11	8834	broad.mit.edu	37	chr17	21101603	21101603	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttgtctcttgtgggccGggtggttttgcttcgctccc	13	11	2	0	rs7212548	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21101603	T	T	21101603	1	4	9	0	1	0	0	0	0	0	0	0	16149	1131	39	1		1	TMEM11	17	21101603	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	179171	21101603	60093607	15994	24145											
LGALS9	3965	broad.mit.edu	37	chr17	25969281	25969281	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtgatggtgaacgggatCctcttcgtgcagtacttcca	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25969281	A	A	25969281	2	1	9	1	0	0	0	0	0	0	0	1	8820	845	30	3		3	LGALS9	17	25969281	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4867678	25969281	55225929	15995	24146											
LGALS9	3965	broad.mit.edu	37	chr17	25975883	25975883	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtggatcttgtgtgaagctCactgcctcaaggtggccgtg	14	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25975883	A	A	25975883	3	1	9	1	0	0	0	0	1	0	0	0	8820	826	29	3	985	3	LGALS9	17	25975883	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6602	25975883	55219327	15996	24147											
NOS2	4843	broad.mit.edu	37	chr17	26093545	26093545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcccttacctggatgtcGgactttgtagattctgccga	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26093545	T	T	26093545	3	4	9	1	0	0	0	0	1	0	0	0	10638	1116	39	1	1260	1	NOS2	17	26093545	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	117662	26093545	55101665	15997	24148											
IFT20	90410	broad.mit.edu	37	chr17	26656296	26656296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgagcaagttccgagcacCgatggcctacagtattgcca	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26656296	A	A	26656296	3	1	9	1	0	0	0	0	1	0	0	0	7628	652	23	1	116	1	IFT20	17	26656296	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	562751	26656296	54538914	15998	24149											
TNFAIP1	7126	broad.mit.edu	37	chr17	26668432	26668432	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaactccttcacagccCgtggtgaagctgctgtacaa	9	13	2	2	rs150081648		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26668432	A	A	26668432	2	1	9	1	0	0	0	0	0	0	0	1	16395	639	23	1		1	TNFAIP1	17	26668432	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12136	26668432	54526778	15999	24150											
TMEM199	147007	broad.mit.edu	37	chr17	26688180	26688180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttctccccatctccagcGggtgctagctgcattgatcg	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26688180	T	T	26688180	3	4	9	1	0	0	0	0	1	0	0	0	16243	1130	39	1	555	1	TMEM199	17	26688180	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19748	26688180	54507030	16000	24151											
VTN	7448	broad.mit.edu	37	chr17	26695967	26695967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcatccacgttgtccGggatgccatcgaagccgtca	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26695967	T	T	26695967	3	4	9	1	0	0	0	0	1	0	0	0	17364	1116	39	1	700	1	VTN	17	26695967	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7787	26695967	54499243	16001	24152											
SARM1	23098	broad.mit.edu	37	chr17	26715606	26715606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcattggcctgtggtcCagaagatagggtcgtcttct	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26715606	A	A	26715606	1	1	9	0	1	0	0	0	0	0	0	0	13954	609	21	2		2	SARM1	17	26715606	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	19639	26715606	54479604	16002	24153											
SLC13A2	9058	broad.mit.edu	37	chr17	26820747	26820747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctctggttcacccGggagccgggcttttttcttg	14	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26820747	T	T	26820747	3	4	9	1	0	0	0	0	1	0	0	0	14505	1116	39	1	1210	1	SLC13A2	17	26820747	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	105141	26820747	54374463	16003	24154											
SLC13A2	9058	broad.mit.edu	37	chr17	26823556	26823556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgttgcctgtggccacccCgcccaatgccatcgtcttct	8	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26823556	A	A	26823556	3	1	9	1	0	0	0	0	1	0	0	0	14505	652	23	1	1748	1	SLC13A2	17	26823556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2809	26823556	54371654	16004	24155											
FOXN1	8456	broad.mit.edu	37	chr17	26862014	26862014	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccattgttcccacagccGgacgggcaccttgagctgcg	12	15	0	1	rs115771646	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26862014	T	T	26862014	2	4	9	1	0	0	0	0	0	0	0	1	6079	1103	39	1		1	FOXN1	17	26862014	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38458	26862014	54333196	16005	24156											
UNC119	9094	broad.mit.edu	37	chr17	26875663	26875663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcctgagtccatgtccCgaatcttaaacctgacaaag	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26875663	A	A	26875663	3	1	9	1	0	0	0	0	1	0	0	0	17108	652	23	1	510	1	UNC119	17	26875663	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13649	26875663	54319547	16006	24157											
PIGS	94005	broad.mit.edu	37	chr17	26890796	26890796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatcagaaggaaaaagaGggcttcacattaaaatggtg	12	4	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26890796	T	T	26890796	1	4	9	0	1	0	0	0	0	0	0	0	11993	1015	35	2		2	PIGS	17	26890796	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15133	26890796	54304414	16007	24158											
SPAG5	10615	broad.mit.edu	37	chr17	26911733	26911733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgcactcctctaactGggcagagacttgttccagca	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26911733	T	T	26911733	3	4	9	1	0	0	0	0	1	0	0	0	15097	1357	47	2	1539	2	SPAG5	17	26911733	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20937	26911733	54283477	16008	24159											
SPAG5	10615	broad.mit.edu	37	chr17	26918754	26918754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgtgtgctactgtcctGggtttctgggtgagggacag	16	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26918754	T	T	26918754	3	4	9	1	0	0	0	0	1	0	0	0	15097	1357	47	2	2266	2	SPAG5	17	26918754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7021	26918754	54276456	16009	24160											
SPAG5	10615	broad.mit.edu	37	chr17	26919347	26919347	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttggtgtcaggcatgtGgacagaatatcttccacact	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26919347	T	T	26919347	2	4	9	1	0	0	0	0	0	0	0	1	15097	1335	47	2		2	SPAG5	17	26919347	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	593	26919347	54275863	16010	24161											
SPAG5	10615	broad.mit.edu	37	chr17	26919809	26919809	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctgtttgtctctgccatGgtatctaaacgggcctcaaa	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26919809	T	T	26919809	2	4	9	1	0	0	0	0	0	0	0	1	15097	1335	47	2		2	SPAG5	17	26919809	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	462	26919809	54275401	16011	24162											
SPAG5	10615	broad.mit.edu	37	chr17	26919820	26919820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgccatggtatctaaacGggcctcaaatatcatgtctt	7	11	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26919820	T	T	26919820	3	4	9	1	0	0	0	0	1	0	0	0	15097	1116	39	1	3227	1	SPAG5	17	26919820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	26919820	54275390	16012	24163											
SPAG5	10615	broad.mit.edu	37	chr17	26919967	26919967	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattggatctagaggctgctCatctgattcatgctgacaag	10	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26919967	A	A	26919967	4	1	9	1	0	0	0	0	0	1	0	0	15097	835	29	3	3374	3	SPAG5	17	26919967	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147	26919967	54275243	16013	24164											
KIAA0100	9703	broad.mit.edu	37	chr17	26942116	26942116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagatggacttcttgccaGggttcttgtcgcccacactt	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26942116	T	T	26942116	3	4	9	1	0	0	0	0	1	0	0	0	8224	1000	35	2	37	2	KIAA0100	17	26942116	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22149	26942116	54253094	16014	24165											
KIAA0100	9703	broad.mit.edu	37	chr17	26942153	26942153	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaaaccaatgaggagccGggctttctcctcctcttcct	7	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26942153	T	T	26942153	2	4	9	1	0	0	0	0	0	0	0	1	8224	1115	39	1		1	KIAA0100	17	26942153	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	26942153	54253057	16015	24166											
KIAA0100	9703	broad.mit.edu	37	chr17	26955366	26955366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactagttgggacacccCgctttggctttttggctggc	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26955366	A	A	26955366	3	1	9	1	0	0	0	0	1	0	0	0	8224	652	23	1	2260	1	KIAA0100	17	26955366	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13213	26955366	54239844	16016	24167											
KIAA0100	9703	broad.mit.edu	37	chr17	26961820	26961820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagagctcctcaattttgcGggcaggcaacaactccccat	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26961820	T	T	26961820	3	4	9	1	0	0	0	0	1	0	0	0	8224	1116	39	1	4018	1	KIAA0100	17	26961820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6454	26961820	54233390	16017	24168											
SDF2	6388	broad.mit.edu	37	chr17	26976024	26976024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcacagctctgcatggtGggcttctgccttcaacaact	9	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26976024	T	T	26976024	3	4	9	1	0	0	0	0	1	0	0	0	14073	1348	47	2	20	2	SDF2	17	26976024	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14204	26976024	54219186	16018	24169											
SUPT6H	6830	broad.mit.edu	37	chr17	27010749	27010749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaccatggccatcgaacGggctttacagcagttcctct	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27010749	T	T	27010749	3	4	9	1	0	0	0	0	1	0	0	0	15518	1116	39	1	2206	1	SUPT6H	17	27010749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34725	27010749	54184461	16019	24170											
SUPT6H	6830	broad.mit.edu	37	chr17	27011929	27011929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacttccttcgactgcccCattttaccaaacggcgaact	6	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27011929	A	A	27011929	3	1	9	1	0	0	0	0	1	0	0	0	15518	594	21	2	2507	2	SUPT6H	17	27011929	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1180	27011929	54183281	16020	24171											
SUPT6H	6830	broad.mit.edu	37	chr17	27014204	27014204	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcccaggtgtgcagttcCgatgaagacatcctgtgtct	11	10	1	2	rs145262815		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27014204	A	A	27014204	2	1	9	1	0	0	0	0	0	0	0	1	15518	639	23	1		1	SUPT6H	17	27014204	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2275	27014204	54181006	16021	24172											
SUPT6H	6830	broad.mit.edu	37	chr17	27026859	27026859	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggccagatcttcccaacCgtgaatggactgtttagatg	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27026859	A	A	27026859	2	1	9	1	0	0	0	0	0	0	0	1	15518	639	23	1		1	SUPT6H	17	27026859	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12655	27026859	54168351	16022	24173											
PROCA1	147011	broad.mit.edu	37	chr17	27031386	27031386	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagctcaaagcaaggggactCgatgacatgggagcaggttg	16	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27031386	A	A	27031386	4	1	9	1	0	0	0	0	0	1	0	0	12652	893	31	3	723	3	PROCA1	17	27031386	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4527	27031386	54163824	16023	24174											
PROCA1	147011	broad.mit.edu	37	chr17	27031411	27031411	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgggagcaggttgggccCgcgccccgggagctgctgct	17	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27031411	A	A	27031411	2	1	9	1	0	0	0	0	0	0	0	1	12652	639	23	1		1	PROCA1	17	27031411	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	27031411	54163799	16024	24175											
NEK8	284086	broad.mit.edu	37	chr17	27061954	27061954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcctgcttgacaaacacCgcatggtcgtcaagatcggt	9	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27061954	A	A	27061954	3	1	9	1	0	0	0	0	1	0	0	0	10425	652	23	1	428	1	NEK8	17	27061954	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30543	27061954	54133256	16025	24176											
NEK8	284086	broad.mit.edu	37	chr17	27066104	27066104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctctcctctctagccCaccattgtggaggctttgct	8	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27066104	A	A	27066104	2	1	9	1	0	0	0	0	0	0	0	1	10425	581	21	2		2	NEK8	17	27066104	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4150	27066104	54129106	16026	24177											
NEK8	284086	broad.mit.edu	37	chr17	27068100	27068100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctcccccatagcctcGggtgattgctacacttttgg	8	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27068100	T	T	27068100	2	4	9	1	0	0	0	0	0	0	0	1	10425	1103	39	1		1	NEK8	17	27068100	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1996	27068100	54127110	16027	24178											
ERAL1	26284	broad.mit.edu	37	chr17	27182316	27182316	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtgactccttgcgtcccCgcggtgtccatgaacagagg	13	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182316	A	A	27182316	2	1	9	1	0	0	0	0	0	0	0	1	5244	639	23	1		1	ERAL1	17	27182316	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	114216	27182316	54012894	16028	24179											
FLOT2	2319	broad.mit.edu	37	chr17	27210235	27210235	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggccaggagttccttctcCgtcatgatcttcacctgtca	8	14	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27210235	A	A	27210235	2	1	9	1	0	0	0	0	0	0	0	1	5995	639	23	1		1	FLOT2	17	27210235	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	27919	27210235	53984975	16029	24180											
FLOT2	2319	broad.mit.edu	37	chr17	27210305	27210305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgaggcagacaaaggccCcagacccagaggtaggcagg	16	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27210305	A	A	27210305	1	1	9	0	1	0	0	0	0	0	0	0	5995	638	22	2		2	FLOT2	17	27210305	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	70	27210305	53984905	16030	24181											
PHF12	57649	broad.mit.edu	37	chr17	27233973	27233973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacattgtccaccgttgtccCatgctcactgtagtttaaca	6	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27233973	A	A	27233973	3	1	9	1	0	0	0	0	1	0	0	0	11918	594	21	2	441	2	PHF12	17	27233973	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23668	27233973	53961237	16031	24182											
SEZ6	124925	broad.mit.edu	37	chr17	27284442	27284442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgaggatggagctgccCatcagcacaaaaccctggtc	12	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27284442	A	A	27284442	3	1	9	1	0	0	0	0	1	0	0	0	14255	594	21	2	603	2	SEZ6	17	27284442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50469	27284442	53910768	16032	24183											
MYO18A	399687	broad.mit.edu	37	chr17	27417837	27417837	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggggtacctgagccacGgcagccttgtgcttcttcat	13	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27417837	T	T	27417837	2	4	9	1	0	0	0	0	0	0	0	1	10159	1103	39	1		1	MYO18A	17	27417837	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	133395	27417837	53777373	16033	24184											
MYO18A	399687	broad.mit.edu	37	chr17	27424857	27424857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgctgcccggatgagacGggcctccatcacctccattt	9	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27424857	T	T	27424857	3	4	9	1	0	0	0	0	1	0	0	0	10159	1116	39	1	2181	1	MYO18A	17	27424857	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7020	27424857	53770353	16034	24185											
MYO18A	399687	broad.mit.edu	37	chr17	27425225	27425225	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacgctcatctgtcagctcCgatgtcagctctgagatctg	9	12	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27425225	A	A	27425225	2	1	9	1	0	0	0	0	0	0	0	1	10159	639	23	1		1	MYO18A	17	27425225	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	368	27425225	53769985	16035	24186											
NUFIP2	57532	broad.mit.edu	37	chr17	27613442	27613442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgctctgatgacttccCagtaacagtctcagggccag	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27613442	A	A	27613442	3	1	9	1	0	0	0	0	1	0	0	0	10844	594	21	2	529	2	NUFIP2	17	27613442	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	188217	27613442	53581768	16036	24187											
NUFIP2	57532	broad.mit.edu	37	chr17	27614178	27614178	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtttcatacttccaaatGggcttcgaaccatctactcg	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27614178	T	T	27614178	2	4	9	1	0	0	0	0	0	0	0	1	10844	1335	47	2		2	NUFIP2	17	27614178	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	736	27614178	53581032	16037	24188											
SSH2	85464	broad.mit.edu	37	chr17	28030030	28030030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggatgagccatttcccCgtggtagaaaaagggcagca	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28030030	A	A	28030030	3	1	9	1	0	0	0	0	1	0	0	0	15303	652	23	1	4165	1	SSH2	17	28030030	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	415852	28030030	53165180	16038	24189											
CCDC55	84081	broad.mit.edu	37	chr17	28445102	28445102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatatatgcaggtatGggcttattttgccaaagaaa	8	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28445102	T	T	28445102	3	4	9	1	0	0	0	0	1	0	0	0	2853	1348	47	2	31	2	CCDC55	17	28445102	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	415072	28445102	52750108	16039	24190											
SLC6A4	6532	broad.mit.edu	37	chr17	28537638	28537638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaactcatccagcacagcCgtgatcaccccctccaagcc	8	18	2	1	rs76417319		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28537638	A	A	28537638	2	1	9	1	0	0	0	0	0	0	0	1	14800	639	23	1		1	SLC6A4	17	28537638	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92536	28537638	52657572	16040	24191											
TMIGD1	388364	broad.mit.edu	37	chr17	28651865	28651865	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgaaagtccaagctctcCgttttcagagatgactttgc	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28651865	A	A	28651865	2	1	9	1	0	0	0	0	0	0	0	1	16353	639	23	1		1	TMIGD1	17	28651865	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	114227	28651865	52543345	16041	24192											
CRLF3	51379	broad.mit.edu	37	chr17	29119514	29119514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggagtagagaacaccCgatgattcagaatcgttccg	11	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29119514	A	A	29119514	2	1	9	1	0	0	0	0	0	0	0	1	3920	639	23	1		1	CRLF3	17	29119514	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	467649	29119514	52075696	16042	24193											
CRLF3	51379	broad.mit.edu	37	chr17	29130952	29130952	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctgcagtgttgactcCgtgttctatgagcttctggc	11	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29130952	A	A	29130952	4	1	9	1	0	0	0	0	0	1	0	0	3920	661	23	1	1052	1	CRLF3	17	29130952	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11438	29130952	52064258	16043	24194											
ATAD5	79915	broad.mit.edu	37	chr17	29157995	29157995	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtactacatgcgcctGggcaaagacttccacacgaa	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29157995	T	T	29157995	1	4	9	0	1	0	0	0	0	0	0	0	1080	1363	47	2		2	ATAD5	17	29157995	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	27043	29157995	52037215	16044	24195											
ATAD5	79915	broad.mit.edu	37	chr17	29158185	29158185	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagagacaattgtgttccCgaggtctaagctctggatca	12	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29158185	A	A	29158185	1	1	9	0	1	0	0	0	0	0	0	0	1080	667	23	1		1	ATAD5	17	29158185	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	190	29158185	52037025	16045	24196											
ATAD5	79915	broad.mit.edu	37	chr17	29161275	29161275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttttgctccaccaaaacCtagtaatattctggattatt	6	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29161275	A	A	29161275	3	1	9	1	0	0	0	0	1	0	0	0	1080	681	24	2	182	2	ATAD5	17	29161275	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3090	29161275	52033935	16046	24197											
EVI2A	2123	broad.mit.edu	37	chr17	29646023	29646023	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctgtgtgttccatgtcCgtgggcatgcttggcaatct	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29646023	A	A	29646023	2	1	9	1	0	0	0	0	0	0	0	1	5329	639	23	1		1	EVI2A	17	29646023	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	484748	29646023	51549187	16047	24198											
UTP6	55813	broad.mit.edu	37	chr17	30200659	30200659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaccttctgccattcccCacaccacaagacttggaaca	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30200659	A	A	30200659	1	1	9	0	1	0	0	0	0	0	0	0	17229	609	21	2		2	UTP6	17	30200659	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	554636	30200659	50994551	16048	24199											
LRRC37B	114659	broad.mit.edu	37	chr17	30348372	30348372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctcccccagcagccccGggggactttgattacctggg	12	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30348372	T	T	30348372	2	4	9	1	0	0	0	0	0	0	0	1	9081	1103	39	1		1	LRRC37B	17	30348372	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	147713	30348372	50846838	16049	24200											
LRRC37B	114659	broad.mit.edu	37	chr17	30349744	30349744	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgagctctgcacctgcGgagatgagactctgtcatgt	12	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30349744	T	T	30349744	4	4	9	1	0	0	0	0	0	1	0	0	9081	1117	39	1	1581	1	LRRC37B	17	30349744	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1372	30349744	50845466	16050	24201											
LRRC37B	114659	broad.mit.edu	37	chr17	30372608	30372608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccaagtgtccagtccacGggtctcagtaacacctcttt	7	14	2	0	rs2470257		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30372608	T	T	30372608	1	4	9	0	1	0	0	0	0	0	0	0	9081	1131	39	1		1	LRRC37B	17	30372608	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22864	30372608	50822602	16051	24202											
LRRC37B	114659	broad.mit.edu	37	chr17	30374990	30374990	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacatcttgccttatctctCactgggaaatctaggtgcag	8	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30374990	A	A	30374990	1	1	9	0	1	0	0	0	0	0	0	0	9081	841	29	3		3	LRRC37B	17	30374990	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2382	30374990	50820220	16052	24203											
LRRC37B	114659	broad.mit.edu	37	chr17	30377041	30377041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcatgaaagaagttccagGagatgactataagaacaaac	9	7	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30377041	T	T	30377041	3	4	9	1	0	0	0	0	1	0	0	0	9081	1174	41	3	2738	3	LRRC37B	17	30377041	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2051	30377041	50818169	16053	24204											
RHOT1	55288	broad.mit.edu	37	chr17	30521060	30521060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagacacgaaactacttGgactgtgcttcgacgatttg	12	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30521060	T	T	30521060	3	4	9	1	0	0	0	0	1	0	0	0	13452	1357	47	2	845	2	RHOT1	17	30521060	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	144019	30521060	50674150	16054	24205											
MYO1D	4642	broad.mit.edu	37	chr17	31039074	31039074	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaggtaaacaatgttcGgggtgttcgaatgaaaattt	10	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039074	T	T	31039074	2	4	9	1	0	0	0	0	0	0	0	1	10165	1124	39	1		1	MYO1D	17	31039074	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	518014	31039074	50156136	16055	24206											
CCL7	6354	broad.mit.edu	37	chr17	32598804	32598804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacctggacaagaaaaccCaaactccaaagctttgaaca	6	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32598804	A	A	32598804	3	1	9	1	0	0	0	0	1	0	0	0	2936	595	21	2	293	2	CCL7	17	32598804	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1559730	32598804	48596406	16056	24207											
RFFL	117584	broad.mit.edu	37	chr17	33343425	33343425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgatccttgtatagccGggtcactctctccatcagct	7	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33343425	T	T	33343425	2	4	9	1	0	0	0	0	0	0	0	1	13358	1115	39	1		1	RFFL	17	33343425	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	744621	33343425	47851785	16057	24208											
NLE1	54475	broad.mit.edu	37	chr17	33463263	33463263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaccggaggggagaaaaGgagatgaggaagaaggccga	19	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33463263	T	T	33463263	1	4	9	0	1	0	0	0	0	0	0	0	10555	1015	35	2		2	NLE1	17	33463263	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	119838	33463263	47731947	16058	24209											
NLE1	54475	broad.mit.edu	37	chr17	33463399	33463399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggatccttggaggtcttGgggattaactgaggcctcag	14	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33463399	T	T	33463399	3	4	9	1	0	0	0	0	1	0	0	0	10555	1357	47	2	535	2	NLE1	17	33463399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	136	33463399	47731811	16059	24210											
UNC45B	146862	broad.mit.edu	37	chr17	33480041	33480041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagccagcagaaggaccCgccagtctggacagtgacat	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33480041	A	A	33480041	1	1	9	0	1	0	0	0	0	0	0	0	17115	667	23	1		1	UNC45B	17	33480041	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16642	33480041	47715169	16060	24211											
UNC45B	146862	broad.mit.edu	37	chr17	33482539	33482539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaagaaaaggtcagttGctacctcagactgggaattc	13	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33482539	T	T	33482539	1	4	9	0	1	0	0	0	0	0	0	0	17115	1334	46	3		3	UNC45B	17	33482539	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2498	33482539	47712671	16061	24212											
UNC45B	146862	broad.mit.edu	37	chr17	33486247	33486247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctttttccaggtgagatGggcaacactatactcccctg	8	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33486247	T	T	33486247	1	4	9	0	1	0	0	0	0	0	0	0	17115	1363	47	2		2	UNC45B	17	33486247	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3708	33486247	47708963	16062	24213											
SLFN11	91607	broad.mit.edu	37	chr17	33690617	33690617	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatccagtcccatctccacGggatgctcaaccttcttggc	7	15	3	0	rs116005359	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33690617	T	T	33690617	2	4	9	1	0	0	0	0	0	0	0	1	14847	1103	39	1		1	SLFN11	17	33690617	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	204370	33690617	47504593	16063	24214											
SLFN13	146857	broad.mit.edu	37	chr17	33772557	33772557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaataaagcacacgcggccCgtataactctcgccctctct	6	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33772557	A	A	33772557	3	1	9	1	0	0	0	0	1	0	0	0	14850	652	23	1	2566	1	SLFN13	17	33772557	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	81940	33772557	47422653	16064	24215											
PEX12	5193	broad.mit.edu	37	chr17	33904455	33904455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacttgtgagtgtccccCattacaattctctttaagcc	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33904455	A	A	33904455	3	1	9	1	0	0	0	0	1	0	0	0	11835	594	21	2	805	2	PEX12	17	33904455	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131898	33904455	47290755	16065	24216											
AP2B1	163	broad.mit.edu	37	chr17	33977577	33977577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcctgaccttcgagaccGgggctatatttattggcgcc	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33977577	T	T	33977577	3	4	9	1	0	0	0	0	1	0	0	0	743	1116	39	1	1611	1	AP2B1	17	33977577	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73122	33977577	47217633	16066	24217											
RDM1	201299	broad.mit.edu	37	chr17	34252755	34252755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattgttactgtcttccCattcagtagttcctgcttga	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34252755	A	A	34252755	1	1	9	0	1	0	0	0	0	0	0	0	13305	609	21	2		2	RDM1	17	34252755	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	275178	34252755	46942455	16067	24218											
TBC1D3B	414059	broad.mit.edu	37	chr17	34499232	34499232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggttccgtatcgatccCtgaagaacatatgcttcctt	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34499232	A	A	34499232	3	1	9	1	0	0	0	0	1	0	0	0	15740	681	24	2	1202	2	TBC1D3B	17	34499232	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	246477	34499232	46695978	16068	24219											
MYO19	80179	broad.mit.edu	37	chr17	34869369	34869369	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaagaatccaagttcGgggcagaggtcagcagcagc	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34869369	T	T	34869369	1	4	9	0	1	0	0	0	0	0	0	0	10161	1131	39	1		1	MYO19	17	34869369	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	370137	34869369	46325841	16069	24220											
MYO19	80179	broad.mit.edu	37	chr17	34881097	34881097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactgacaacaatagactGgttgactggttcaatcaggc	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34881097	T	T	34881097	3	4	9	1	0	0	0	0	1	0	0	0	10161	1357	47	2	2680	2	MYO19	17	34881097	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11728	34881097	46314113	16070	24221											
GGNBP2	79893	broad.mit.edu	37	chr17	34943636	34943636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaacgttgtttggtccCgattccggaaaaggtgccaa	11	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34943636	A	A	34943636	2	1	9	1	0	0	0	0	0	0	0	1	6423	639	23	1		1	GGNBP2	17	34943636	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62539	34943636	46251574	16071	24222											
GGNBP2	79893	broad.mit.edu	37	chr17	34945743	34945743	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaatagagaacaatacCgacagcatctgaaggagaaa	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34945743	A	A	34945743	2	1	9	1	0	0	0	0	0	0	0	1	6423	644	23	1		1	GGNBP2	17	34945743	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2107	34945743	46249467	16072	24223											
ACACA	31	broad.mit.edu	37	chr17	35445999	35445999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatccttattattgtccCaaacataagcctgcaaacag	5	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35445999	A	A	35445999	3	1	9	1	0	0	0	0	1	0	0	0	106	595	21	2	257	2	ACACA	17	35445999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	500256	35445999	45749211	16073	24224											
ACACA	31	broad.mit.edu	37	chr17	35468504	35468504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtagactgggtccaccCgacgcatggttttcaccaga	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35468504	A	A	35468504	3	1	9	1	0	0	0	0	1	0	0	0	106	652	23	1	644	1	ACACA	17	35468504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22505	35468504	45726706	16074	24225											
ACACA	31	broad.mit.edu	37	chr17	35583270	35583270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgtccttacctggcgtgctCgaagtgctactttggcattg	11	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35583270	A	A	35583270	3	1	9	1	0	0	0	0	1	0	0	0	106	884	31	3	3925	3	ACACA	17	35583270	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	114766	35583270	45611940	16075	24226											
ACACA	31	broad.mit.edu	37	chr17	35583302	35583302	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggcattggtggtcttactGagttgagttagctctgtgag	14	5	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35583302	T	T	35583302	2	4	9	1	0	0	0	0	0	0	0	1	106	1277	45	3		3	ACACA	17	35583302	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	35583302	45611908	16076	24227											
ACACA	31	broad.mit.edu	37	chr17	35601977	35601977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttagagagcaatattcGgagcaccttcctactcacct	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35601977	T	T	35601977	1	4	9	0	1	0	0	0	0	0	0	0	106	1131	39	1		1	ACACA	17	35601977	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18675	35601977	45593233	16077	24228											
ACACA	31	broad.mit.edu	37	chr17	35632921	35632921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcttatcccctaaagccCacatggcctggcttggagga	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35632921	A	A	35632921	3	1	9	1	0	0	0	0	1	0	0	0	106	595	21	2	6523	2	ACACA	17	35632921	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30944	35632921	45562289	16078	24229											
TADA2A	6871	broad.mit.edu	37	chr17	35771459	35771459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccaattagggaatggacCgtttgggtccctttagcagt	12	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35771459	A	A	35771459	3	1	9	1	0	0	0	0	1	0	0	0	15629	652	23	1	9	1	TADA2A	17	35771459	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138538	35771459	45423751	16079	24230											
DUSP14	11072	broad.mit.edu	37	chr17	35872650	35872650	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggactgtactttgacacCgtggctgacaagatccacag	10	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35872650	A	A	35872650	2	1	9	1	0	0	0	0	0	0	0	1	4854	639	23	1		1	DUSP14	17	35872650	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	101191	35872650	45322560	16080	24231											
SYNRG	11276	broad.mit.edu	37	chr17	35902688	35902688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaagggaaataagacccCacaattagaggcaagcaatt	9	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35902688	A	A	35902688	1	1	9	0	1	0	0	0	0	0	0	0	15579	609	21	2		2	SYNRG	17	35902688	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	30038	35902688	45292522	16081	24232											
DDX52	11056	broad.mit.edu	37	chr17	35988775	35988775	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttggacaagatgtatactCttttacatgattaatgaaat	6	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35988775	A	A	35988775	1	1	9	0	1	0	0	0	0	0	0	0	4403	928	32	3		3	DDX52	17	35988775	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	86087	35988775	45206435	16082	24233											
TBC1D3	729873	broad.mit.edu	37	chr17	36288204	36288204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcccacagctcatagatcGagcgtacaagggaatgccca	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36288204	T	T	36288204	3	4	9	1	0	0	0	0	1	0	0	0	15739	1058	37	3	308	3	TBC1D3	17	36288204	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	299429	36288204	44907006	16083	24234											
TBC1D3	729873	broad.mit.edu	37	chr17	36288257	36288257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgatgtggtcagtcctcCtgaacactgaggaaatgaag	12	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36288257	A	A	36288257	3	1	9	1	0	0	0	0	1	0	0	0	15739	680	24	2	361	2	TBC1D3	17	36288257	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	36288257	44906953	16084	24235											
TBC1D3	729873	broad.mit.edu	37	chr17	36288289	36288289	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgaagttgaaaaacccCggaagataccaggtacgctc	10	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36288289	A	A	36288289	2	1	9	1	0	0	0	0	0	0	0	1	15739	639	23	1		1	TBC1D3	17	36288289	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	36288289	44906921	16085	24236											
TBC1D3	729873	broad.mit.edu	37	chr17	36358982	36358982	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagatgtaacaggtgtgcGggcaaacttcacttccacta	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36358982	T	T	36358982	1	4	9	0	1	0	0	0	0	0	0	0	15739	1131	39	1		1	TBC1D3	17	36358982	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	70693	36358982	44836228	16086	24237											
GPR179	440435	broad.mit.edu	37	chr17	36485899	36485899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccgttcccctagaccctGggtcatcctcctgcctctgt	7	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36485899	T	T	36485899	3	4	9	1	0	0	0	0	1	0	0	0	6739	1357	47	2	3554	2	GPR179	17	36485899	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126917	36485899	44709311	16087	24238											
MLLT6	4302	broad.mit.edu	37	chr17	36865473	36865473	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggagagcaaggcggcctcGggagcctgcatgacctgtaa	16	11	0	2	rs144559323		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36865473	T	T	36865473	2	4	9	1	0	0	0	0	0	0	0	1	9723	1103	39	1		1	MLLT6	17	36865473	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	379574	36865473	44329737	16088	24239											
PIP4K2B	8396	broad.mit.edu	37	chr17	36940530	36940530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaattccaaacctctccCgaaggtttcggaacaccatg	6	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36940530	A	A	36940530	3	1	9	1	0	0	0	0	1	0	0	0	12032	652	23	1	962	1	PIP4K2B	17	36940530	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75057	36940530	44254680	16089	24240											
FBXO47	494188	broad.mit.edu	37	chr17	37099165	37099165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctctagaagccactcacGgggaaccacttttattagag	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37099165	T	T	37099165	3	4	9	1	0	0	0	0	1	0	0	0	5813	1116	39	1	421	1	FBXO47	17	37099165	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	158635	37099165	44096045	16090	24241											
RPL19	6143	broad.mit.edu	37	chr17	37357572	37357572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcgccaatgccaactccCgtgagtacctgggatctgtc	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37357572	A	A	37357572	3	1	9	1	0	0	0	0	1	0	0	0	13677	666	23	1	118	1	RPL19	17	37357572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	258407	37357572	43837638	16091	24242											
CDK12	51755	broad.mit.edu	37	chr17	37665992	37665992	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagcagattttggacttgctCggctctataactctgaagag	10	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37665992	A	A	37665992	2	1	9	1	0	0	0	0	0	0	0	1	3158	875	31	3		3	CDK12	17	37665992	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	308420	37665992	43529218	16092	24243											
TCAP	8557	broad.mit.edu	37	chr17	37821714	37821714	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgacactgtccacacggccCgaggaggggtgagtgtgggt	17	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37821714	G	G	37821714	2	3	9	1	0	0	0	0	0	0	0	1	15788	639	23	4		4	TCAP	17	37821714	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	155722	37821714	43373496	16093	24244											
ERBB2	2064	broad.mit.edu	37	chr17	37868108	37868108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattattcttcttgtgcctGggcacggtaatgctgctcat	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37868108	T	T	37868108	1	4	9	0	1	0	0	0	0	0	0	0	5248	1363	47	2		2	ERBB2	17	37868108	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46394	37868108	43327102	16094	24245											
GRB7	2886	broad.mit.edu	37	chr17	37900375	37900375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggctttctgcagctgcGgggttcaggacggaagcttt	15	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37900375	T	T	37900375	3	4	9	1	0	0	0	0	1	0	0	0	6825	1116	39	1	738	1	GRB7	17	37900375	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32267	37900375	43294835	16095	24246											
IKZF3	22806	broad.mit.edu	37	chr17	37947753	37947753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacttaaaaggtttttcccCtgtgtgcagtttaatgtggc	9	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37947753	A	A	37947753	3	1	9	1	0	0	0	0	1	0	0	0	7686	681	24	2	1037	2	IKZF3	17	37947753	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47378	37947753	43247457	16096	24247											
IKZF3	22806	broad.mit.edu	37	chr17	37988355	37988355	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacctgatgttacctgcGggcacagactgctcctgagt	11	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37988355	T	T	37988355	2	4	9	1	0	0	0	0	0	0	0	1	7686	1103	39	1		1	IKZF3	17	37988355	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40602	37988355	43206855	16097	24248											
MED24	9862	broad.mit.edu	37	chr17	38209680	38209680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgattacaacttctctGggtttatccctcccatcttt	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38209680	T	T	38209680	1	4	9	0	1	0	0	0	0	0	0	0	9535	1363	47	2		2	MED24	17	38209680	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	221325	38209680	42985530	16098	24249											
THRA	7067	broad.mit.edu	37	chr17	38244622	38244622	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggagatggctgtcaagcGggagcagctcaagaatggcg	18	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38244622	C	C	38244622	3	2	9	1	0	0	0	0	1	0	0	0	15996	1116	39	4	877	4	THRA	17	38244622	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	34942	38244622	42950588	16099	24250											
RAPGEFL1	51195	broad.mit.edu	37	chr17	38340539	38340539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtctagccatgcttctcCatttcttggacacctaccag	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38340539	A	A	38340539	3	1	9	1	0	0	0	0	1	0	0	0	13157	594	21	2	57	2	RAPGEFL1	17	38340539	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95917	38340539	42854671	16100	24251											
RAPGEFL1	51195	broad.mit.edu	37	chr17	38348886	38348886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggaaccacaaaagctaccGagaagtgatctccaaaatga	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38348886	T	T	38348886	3	4	9	1	0	0	0	0	1	0	0	0	13157	1058	37	3	1105	3	RAPGEFL1	17	38348886	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8347	38348886	42846324	16101	24252											
WIPF2	147179	broad.mit.edu	37	chr17	38433433	38433433	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatcccagcaaaacaaacCgaggtgagaataataataag	7	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38433433	A	A	38433433	2	1	9	1	0	0	0	0	0	0	0	1	17495	644	23	1		1	WIPF2	17	38433433	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84547	38433433	42761777	16102	24253											
CDC6	990	broad.mit.edu	37	chr17	38447949	38447949	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagtctgaattatgatactCttggtaaaatgatacttggg	10	4	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38447949	A	A	38447949	1	1	9	0	1	0	0	0	0	0	0	0	3113	928	32	3		3	CDC6	17	38447949	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14516	38447949	42747261	16103	24254											
CDC6	990	broad.mit.edu	37	chr17	38457849	38457849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagagaaacaaggaaaccCgtttgacaaaggtacaactg	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38457849	A	A	38457849	3	1	9	1	0	0	0	0	1	0	0	0	3113	652	23	1	1620	1	CDC6	17	38457849	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9900	38457849	42737361	16104	24255											
TOP2A	7153	broad.mit.edu	37	chr17	38548922	38548922	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgattctgaatcagaccaGggatttctcttctttccttt	6	10	5	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38548922	T	T	38548922	2	4	9	1	0	0	0	0	0	0	0	1	16489	987	35	2		2	TOP2A	17	38548922	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	91073	38548922	42646288	16105	24256											
TOP2A	7153	broad.mit.edu	37	chr17	38557247	38557247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaataataggaatgtacCattcaggctcaacacgctgg	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38557247	A	A	38557247	3	1	9	1	0	0	0	0	1	0	0	0	16489	595	21	2	2136	2	TOP2A	17	38557247	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8325	38557247	42637963	16106	24257											
TOP2A	7153	broad.mit.edu	37	chr17	38560480	38560480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttctcgcttgtcattcCgtttgaagcaagtaaacaaa	6	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38560480	A	A	38560480	3	1	9	1	0	0	0	0	1	0	0	0	16489	652	23	1	2456	1	TOP2A	17	38560480	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3233	38560480	42634730	16107	24258											
KRT24	192666	broad.mit.edu	37	chr17	38854851	38854851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataccagatccctggatccCatgtttacagatcctgagtt	8	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38854851	A	A	38854851	3	1	9	1	0	0	0	0	1	0	0	0	8532	594	21	2	172	2	KRT24	17	38854851	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	294371	38854851	42340359	16108	24259											
KRT24	192666	broad.mit.edu	37	chr17	38854966	38854966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagaaagcctccgcccCggggattcttcatgatgaag	13	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38854966	A	A	38854966	1	1	9	0	1	0	0	0	0	0	0	0	8532	667	23	1		1	KRT24	17	38854966	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	115	38854966	42340244	16109	24260											
KRT20	54474	broad.mit.edu	37	chr17	39041106	39041106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtcgcgaccagccctcGgggcgttggtttcgtaccac	13	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39041106	T	T	39041106	3	4	9	1	0	0	0	0	1	0	0	0	8529	1116	39	1	974	1	KRT20	17	39041106	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	186140	39041106	42154104	16110	24261											
KRT23	25984	broad.mit.edu	37	chr17	39081634	39081634	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccctccaggagccgtcGgtacgtggtgatttccttct	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39081634	T	T	39081634	2	4	9	1	0	0	0	0	0	0	0	1	8531	1124	39	1		1	KRT23	17	39081634	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	40528	39081634	42113576	16111	24262											
KRT23	25984	broad.mit.edu	37	chr17	39084672	39084672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggaaatgcaacctttGggaagtttgtgcatctttct	9	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39084672	T	T	39084672	1	4	9	0	1	0	0	0	0	0	0	0	8531	1363	47	2		2	KRT23	17	39084672	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3038	39084672	42110538	16112	24263											
KRT39	390792	broad.mit.edu	37	chr17	39118425	39118425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagtaccattcgatgctGggcctgcagttcaacctcca	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39118425	T	T	39118425	3	4	9	1	0	0	0	0	1	0	0	0	8547	1357	47	2	502	2	KRT39	17	39118425	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33753	39118425	42076785	16113	24264											
KRT39	390792	broad.mit.edu	37	chr17	39118444	39118444	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctgcagttcaacctcCagagtgttcacactgcgtct	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39118444	A	A	39118444	2	1	9	1	0	0	0	0	0	0	0	1	8547	581	21	2		2	KRT39	17	39118444	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19	39118444	42076766	16114	24265											
KRT39	390792	broad.mit.edu	37	chr17	39118788	39118788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatgtcaagtctctcccCaagctgacactgtaaagaat	6	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39118788	A	A	39118788	3	1	9	1	0	0	0	0	1	0	0	0	8547	594	21	2	755	2	KRT39	17	39118788	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	344	39118788	42076422	16115	24266											
KRT36	8689	broad.mit.edu	37	chr17	39644997	39644997	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaacaagaggcttccCataagctacaggaggcccag	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39644997	A	A	39644997	1	1	9	0	1	0	0	0	0	0	0	0	8544	609	21	2		2	KRT36	17	39644997	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	526209	39644997	41550213	16116	24267											
KRT13	3860	broad.mit.edu	37	chr17	39659272	39659272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatctctgccagcacgcGggtcaggtcaatgcctgggg	13	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39659272	T	T	39659272	3	4	9	1	0	0	0	0	1	0	0	0	8521	1116	39	1	582	1	KRT13	17	39659272	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14275	39659272	41535938	16117	24268											
KRT13	3860	broad.mit.edu	37	chr17	39659949	39659949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaatctccaggatgaccCggttgttttcaatggtggcg	12	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39659949	A	A	39659949	3	1	9	1	0	0	0	0	1	0	0	0	8521	652	23	1	880	1	KRT13	17	39659949	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	677	39659949	41535261	16118	24269											
KRT15	3866	broad.mit.edu	37	chr17	39670292	39670292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttagatttctctcttgtGggaagaaaccacctgtccat	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39670292	T	T	39670292	3	4	9	1	0	0	0	0	1	0	0	0	8523	1348	47	2	20	2	KRT15	17	39670292	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10343	39670292	41524918	16119	24270											
GAST	2520	broad.mit.edu	37	chr17	39871736	39871736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttgcactggctctggcCgccttctctgaagcttcttg	9	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39871736	A	A	39871736	2	1	9	1	0	0	0	0	0	0	0	1	6314	639	23	1		1	GAST	17	39871736	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	201444	39871736	41323474	16120	24271											
HAP1	9001	broad.mit.edu	37	chr17	39881202	39881202	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacctcctcccagccctcGgtctcctctgacaccagctc	5	22	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39881202	T	T	39881202	2	4	9	1	0	0	0	0	0	0	0	1	7019	1103	39	1		1	HAP1	17	39881202	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9466	39881202	41314008	16121	24272											
FKBP10	60681	broad.mit.edu	37	chr17	39976616	39976616	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaatcaggacactgtccCggccatctgagacctgcaat	10	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39976616	A	A	39976616	2	1	9	1	0	0	0	0	0	0	0	1	5959	643	23	1		1	FKBP10	17	39976616	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95414	39976616	41218594	16122	24273											
ACLY	47	broad.mit.edu	37	chr17	40025296	40025296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacagctacaatgctcacCgagtaaaggacccacagttt	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40025296	A	A	40025296	3	1	9	1	0	0	0	0	1	0	0	0	143	666	23	1	183	1	ACLY	17	40025296	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48680	40025296	41169914	16123	24274											
CNP	1267	broad.mit.edu	37	chr17	40125871	40125871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcttcacggggtactacGggaaaggcaaacctgtgccc	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40125871	T	T	40125871	3	4	9	1	0	0	0	0	1	0	0	0	3658	1116	39	1	1209	1	CNP	17	40125871	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	100575	40125871	41069339	16124	24275											
KAT2A	2648	broad.mit.edu	37	chr17	40269068	40269068	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcaccttgacctgctcattCgaggtgacagcacagaagac	9	13	2	4	rs142096138		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40269068	A	A	40269068	2	1	9	1	0	0	0	0	0	0	0	1	8051	871	31	3		3	KAT2A	17	40269068	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	143197	40269068	40926142	16125	24276											
RAB5C	5878	broad.mit.edu	37	chr17	40282428	40282428	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaggctggatttgcctacCgcagactcccccagcagaac	10	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40282428	A	A	40282428	2	1	9	1	0	0	0	0	0	0	0	1	13058	639	23	1		1	RAB5C	17	40282428	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13360	40282428	40912782	16126	24277											
STAT5B	6777	broad.mit.edu	37	chr17	40359692	40359692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcggtcggctagggacCgaatggagaagtctctggtg	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40359692	A	A	40359692	3	1	9	1	0	0	0	0	1	0	0	0	15387	652	23	1	418	1	STAT5B	17	40359692	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77264	40359692	40835518	16127	24278											
STAT3	6774	broad.mit.edu	37	chr17	40498695	40498695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggagattatgaaacacCaaagtggcatgtgattcttt	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40498695	A	A	40498695	3	1	9	1	0	0	0	0	1	0	0	0	15384	593	21	2	2235	2	STAT3	17	40498695	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	139003	40498695	40696515	16128	24279											
TUBG1	7283	broad.mit.edu	37	chr17	40766252	40766252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgccctgagcgctggccGggtccctgtctcactgtcct	12	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40766252	T	T	40766252	1	4	9	0	1	0	0	0	0	0	0	0	16890	1131	39	1		1	TUBG1	17	40766252	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	267557	40766252	40428958	16129	24280											
CNTNAP1	8506	broad.mit.edu	37	chr17	40843878	40843878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcactacgcttcccccCaatccgtgccaaccacagcc	7	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40843878	A	A	40843878	3	1	9	1	0	0	0	0	1	0	0	0	3678	594	21	2	2461	2	CNTNAP1	17	40843878	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77626	40843878	40351332	16130	24281											
WNK4	65266	broad.mit.edu	37	chr17	40940199	40940199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagtgacttttcccccGgggacaggtatgttctggta	13	9	1	1	rs61755602		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40940199	T	T	40940199	3	4	9	1	0	0	0	0	1	0	0	0	17507	1116	39	1	1949	1	WNK4	17	40940199	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96321	40940199	40255011	16131	24282											
PSME3	10197	broad.mit.edu	37	chr17	40986651	40986651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttggccctggtattactGtcaactgggataaactgttg	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40986651	T	T	40986651	1	4	9	0	1	0	0	0	0	0	0	0	12814	1392	48	3		3	PSME3	17	40986651	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	46452	40986651	40208559	16132	24283											
AOC2	314	broad.mit.edu	37	chr17	41002311	41002311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcctgtggcctgcctcccCgacctggcagcctgtgtccc	10	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41002311	A	A	41002311	2	1	9	1	0	0	0	0	0	0	0	1	729	639	23	1		1	AOC2	17	41002311	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15660	41002311	40192899	16133	24284											
G6PC	2538	broad.mit.edu	37	chr17	41052971	41052971	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgaattaccaagactcCcaggactggttcatcttggt	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41052971	T	T	41052971	2	4	9	1	0	0	0	0	0	0	0	1	6203	610	22	4		4	G6PC	17	41052971	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	50660	41052971	40142239	16134	24285											
G6PC	2538	broad.mit.edu	37	chr17	41061344	41061344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatgtcattttgtggttGggattctgggctgtgcagct	14	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41061344	T	T	41061344	3	4	9	1	0	0	0	0	1	0	0	0	6203	1339	47	2	485	2	G6PC	17	41061344	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8373	41061344	40133866	16135	24286											
AARSD1	80755	broad.mit.edu	37	chr17	41131261	41131261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaaacaagtaatagagcGggaagagcgcttatcctggg	12	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41131261	T	T	41131261	3	4	9	1	0	0	0	0	1	0	0	0	21	1116	39	1	1516	1	AARSD1	17	41131261	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69917	41131261	40063949	16136	24287											
AARSD1	80755	broad.mit.edu	37	chr17	41131381	41131381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatccaaaccttactgtccCatttcacccttaccttggag	4	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41131381	A	A	41131381	1	1	9	0	1	0	0	0	0	0	0	0	21	609	21	2		2	AARSD1	17	41131381	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	120	41131381	40063829	16137	24288											
IFI35	3430	broad.mit.edu	37	chr17	41165100	41165100	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagatccccctggtattcCgaggacacacccagcaggac	9	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41165100	A	A	41165100	2	1	9	1	0	0	0	0	0	0	0	1	7586	644	23	1		1	IFI35	17	41165100	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33719	41165100	40030110	16138	24289											
BRCA1	672	broad.mit.edu	37	chr17	41209030	41209030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtggaatacagagtggtGgggtgagatttttgtcaact	16	3	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41209030	T	T	41209030	1	4	9	0	1	0	0	0	0	0	0	0	1507	1363	47	2		2	BRCA1	17	41209030	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43930	41209030	39986180	16139	24290											
BRCA1	672	broad.mit.edu	37	chr17	41209054	41209054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatttttgtcaacttgaGggagggagctttacctttct	11	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41209054	T	T	41209054	1	4	9	0	1	0	0	0	0	0	0	0	1507	1015	35	2		2	BRCA1	17	41209054	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	41209054	39986156	16140	24291											
BRCA1	672	broad.mit.edu	37	chr17	41215947	41215947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaaaatatttcagtgtcCgttcacacacaaactcagca	5	11	3	1	rs41293459		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41215947	A	A	41215947	3	1	9	1	0	0	0	0	1	0	0	0	1507	652	23	1	523	1	BRCA1	17	41215947	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6893	41215947	39979263	16141	24292											
TMEM106A	113277	broad.mit.edu	37	chr17	41367758	41367758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctctccgagtttccttGgtgttcagacttttccattc	6	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41367758	T	T	41367758	1	4	9	0	1	0	0	0	0	0	0	0	16143	1363	47	2		2	TMEM106A	17	41367758	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	151811	41367758	39827452	16142	24293											
TMEM106A	113277	broad.mit.edu	37	chr17	41367802	41367802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctgggtcctgctttccCacaggaagctctttgtgttc	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41367802	A	A	41367802	1	1	9	0	1	0	0	0	0	0	0	0	16143	609	21	2		2	TMEM106A	17	41367802	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	41367802	39827408	16143	24294											
TMEM106A	113277	broad.mit.edu	37	chr17	41367880	41367880	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtctttttcctgtttcccCggtccgtcattgtgcagcct	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41367880	A	A	41367880	2	1	9	1	0	0	0	0	0	0	0	1	16143	643	23	1		1	TMEM106A	17	41367880	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	41367880	39827330	16144	24295											
TMEM106A	113277	broad.mit.edu	37	chr17	41369359	41369359	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcttggagctctggtatcCctgctctcacttctgacttc	9	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41369359	G	G	41369359	1	3	9	0	1	0	0	0	0	0	0	0	16143	638	22	4		4	TMEM106A	17	41369359	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1479	41369359	39825851	16145	24296											
DHX8	1659	broad.mit.edu	37	chr17	41577431	41577431	+	Silent	SNP	C	A	A													gctgagatggattctattccCatgggactcaacaaacactg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41577431	A	A	41577431	2	1	9	1	0	0	0	0	0	0	0	1	4555	581	21	2		2	DHX8	17	41577431	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	208072	41577431	39617779	16146	24297	160	2									
DHX8	1659	broad.mit.edu	37	chr17	41577434	41577434	+	Missense_Mutation	SNP	G	T	T													gagatggattctattcccatGggactcaacaaacactgggt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41577434	T	T	41577434	3	4	9	1	0	0	0	0	1	0	0	0	4555	1348	47	2	1551	2	DHX8	17	41577434	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3	41577434	39617776	16147	24298	160	2									
DHX8	1659	broad.mit.edu	37	chr17	41582050	41582050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaacatgaggggtattGggatgatgcccaatgatatt	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41582050	T	T	41582050	3	4	9	1	0	0	0	0	1	0	0	0	4555	1348	47	2	1631	2	DHX8	17	41582050	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4616	41582050	39613160	16148	24299											
MEOX1	4222	broad.mit.edu	37	chr17	41738500	41738500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgctcccaagcacccCgtagtcatcgcctgggcctc	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41738500	A	A	41738500	3	1	9	1	0	0	0	0	1	0	0	0	9566	652	23	1	373	1	MEOX1	17	41738500	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	156450	41738500	39456710	16149	24300											
MPP2	4355	broad.mit.edu	37	chr17	41960230	41960230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggttattctcaatcccccCaccctcaccagcaccacctc	3	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41960230	A	A	41960230	1	1	9	0	1	0	0	0	0	0	0	0	9828	609	21	2		2	MPP2	17	41960230	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	221730	41960230	39234980	16150	24301											
NAGS	162417	broad.mit.edu	37	chr17	42082136	42082136	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaaggctgagctgtggcgcGcggcggcgggcggcgagggg	24	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42082136	A	A	42082136	2	1	9	1	0	0	0	0	0	0	0	1	10239	1074	38	4		4	NAGS	17	42082136	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	121906	42082136	39113074	16151	24302											
LSM12	124801	broad.mit.edu	37	chr17	42113689	42113689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaaagaccaggcaaccCaggtcaacaaaggagatgcg	11	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42113689	A	A	42113689	1	1	9	0	1	0	0	0	0	0	0	0	9140	609	21	2		2	LSM12	17	42113689	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	31553	42113689	39081521	16152	24303											
ATXN7L3	56970	broad.mit.edu	37	chr17	42272502	42272502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgttcagaaatcacccCacattgctggaagaggaata	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42272502	A	A	42272502	3	1	9	1	0	0	0	0	1	0	0	0	1222	594	21	2	431	2	ATXN7L3	17	42272502	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	158813	42272502	38922708	16153	24304											
UBTF	7343	broad.mit.edu	37	chr17	42290593	42290593	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactgccttacctgaatcGggccaggtttcgctcgaact	9	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42290593	T	T	42290593	2	4	9	1	0	0	0	0	0	0	0	1	17035	1124	39	1		1	UBTF	17	42290593	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18091	42290593	38904617	16154	24305											
UBTF	7343	broad.mit.edu	37	chr17	42293938	42293938	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgagcttgcacatgtctcCagaaaagtctttaaatgcta	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42293938	A	A	42293938	4	1	9	1	0	0	0	0	0	1	0	0	17035	603	21	2	2177	2	UBTF	17	42293938	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3345	42293938	38901272	16155	24306											
ITGA2B	3674	broad.mit.edu	37	chr17	42461652	42461652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgggataaggggcttcGggaggcccagtggtgggggc	21	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42461652	T	T	42461652	1	4	9	0	1	0	0	0	0	0	0	0	7946	1131	39	1		1	ITGA2B	17	42461652	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	167714	42461652	38733558	16156	24307											
GPATCH8	23131	broad.mit.edu	37	chr17	42478443	42478443	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcagaactcttctcatcGggttttgttccatcttcaga	8	10	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42478443	T	T	42478443	2	4	9	1	0	0	0	0	0	0	0	1	6659	1103	39	1		1	GPATCH8	17	42478443	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16791	42478443	38716767	16157	24308											
GPATCH8	23131	broad.mit.edu	37	chr17	42478803	42478803	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtggttggtttgaacatGggaccacttccaggtgcact	12	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42478803	T	T	42478803	2	4	9	1	0	0	0	0	0	0	0	1	6659	1335	47	2		2	GPATCH8	17	42478803	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	360	42478803	38716407	16158	24309											
DBF4B	80174	broad.mit.edu	37	chr17	42786726	42786726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagtaggctccgggcccCggacctaggtgggtaacagg	17	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42786726	A	A	42786726	3	1	9	1	0	0	0	0	1	0	0	0	4282	652	23	1	80	1	DBF4B	17	42786726	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	307923	42786726	38408484	16159	24310											
ADAM11	4185	broad.mit.edu	37	chr17	42847300	42847300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggcgagcctcaagccCgacctcacctcgcccgtgac	10	19	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42847300	A	A	42847300	1	1	9	0	1	0	0	0	0	0	0	0	235	667	23	1		1	ADAM11	17	42847300	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60574	42847300	38347910	16160	24311											
ADAM11	4185	broad.mit.edu	37	chr17	42854297	42854297	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaggtcgctgcaaaaccCgggaccggcagtgccaggtt	15	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42854297	A	A	42854297	2	1	9	1	0	0	0	0	0	0	0	1	235	643	23	1		1	ADAM11	17	42854297	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	6997	42854297	38340913	16161	24312											
ADAM11	4185	broad.mit.edu	37	chr17	42855229	42855229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggatttgctcccaccacGgggtgactgcctggagcctg	14	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42855229	T	T	42855229	3	4	9	1	0	0	0	0	1	0	0	0	235	1116	39	1	2158	1	ADAM11	17	42855229	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	932	42855229	38339981	16162	24313											
DCAKD	79877	broad.mit.edu	37	chr17	43131525	43131525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatttggtacaaacaccCtgccagtatttgaatctctt	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43131525	A	A	43131525	1	1	9	0	1	0	0	0	0	0	0	0	4312	696	24	2		2	DCAKD	17	43131525	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	276296	43131525	38063685	16163	24314											
DCAKD	79877	broad.mit.edu	37	chr17	43131582	43131582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatacatgtacatgtccCatgttggggaactcactgcc	9	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43131582	A	A	43131582	1	1	9	0	1	0	0	0	0	0	0	0	4312	609	21	2		2	DCAKD	17	43131582	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57	43131582	38063628	16164	24315											
IMP5	162540	broad.mit.edu	37	chr17	43924075	43924075	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaccgcagtgatagctcCgagggctggagtgacgccca	16	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43924075	A	A	43924075	2	1	9	1	0	0	0	0	0	0	0	1	7791	639	23	1		1	IMP5	17	43924075	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	792493	43924075	37271135	16165	24316											
MAPT	4137	broad.mit.edu	37	chr17	44061022	44061022	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcccagcctcagagccCgacgggcccagtgtagggcg	15	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44061022	A	A	44061022	2	1	9	1	0	0	0	0	0	0	0	1	9389	639	23	1		1	MAPT	17	44061022	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	136947	44061022	37134188	16166	24317											
MAPT	4137	broad.mit.edu	37	chr17	44101480	44101480	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgacatggtagactcgccCcagctcgccacgctagctga	10	15	0	2	rs140985540		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44101480	A	A	44101480	2	1	9	1	0	0	0	0	0	0	0	1	9389	610	22	2		2	MAPT	17	44101480	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40458	44101480	37093730	16167	24318											
KIAA1267	284058	broad.mit.edu	37	chr17	44248241	44248241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggtacatgacgctgctcGggatcagctctggtcagttc	14	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44248241	T	T	44248241	2	4	9	1	0	0	0	0	0	0	0	1	8289	1103	39	1		1	KIAA1267	17	44248241	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	146761	44248241	36946969	16168	24319											
KIAA1267	284058	broad.mit.edu	37	chr17	44248915	44248915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataccccccttcaagtcccCagattcagatcctcccattt	3	18	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44248915	A	A	44248915	3	1	9	1	0	0	0	0	1	0	0	0	8289	594	21	2	2778	2	KIAA1267	17	44248915	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	674	44248915	36946295	16169	24320											
KIAA1267	284058	broad.mit.edu	37	chr17	44249149	44249149	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccccaacagctcagctcGgagttcataggactgagata	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44249149	T	T	44249149	2	4	9	1	0	0	0	0	0	0	0	1	8289	1124	39	1		1	KIAA1267	17	44249149	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	234	44249149	36946061	16170	24321											
KIAA1267	284058	broad.mit.edu	37	chr17	44249398	44249398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaggatgttggcgttgcCgttattttcggcactgccag	12	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44249398	A	A	44249398	3	1	9	1	0	0	0	0	1	0	0	0	8289	652	23	1	3261	1	KIAA1267	17	44249398	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	249	44249398	36945812	16171	24322											
LRRC37A2	474170	broad.mit.edu	37	chr17	44617580	44617580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgacaactgttgaagatcCgtatctctttaaattgccag	7	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44617580	A	A	44617580	3	1	9	1	0	0	0	0	1	0	0	0	9079	652	23	1	2967	1	LRRC37A2	17	44617580	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	368182	44617580	36577630	16172	24323											
LRRC37A2	474170	broad.mit.edu	37	chr17	44626462	44626462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtgacccacagaacaccCaaagtcaaaaagagtccaaa	6	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44626462	A	A	44626462	2	1	9	1	0	0	0	0	0	0	0	1	9079	581	21	2		2	LRRC37A2	17	44626462	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8882	44626462	36568748	16173	24324											
GOSR2	9570	broad.mit.edu	37	chr17	45009578	45009578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactaacgtaagccaggccCgtggtgagggtcggcctgca	14	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45009578	A	A	45009578	1	1	9	0	1	0	0	0	0	0	0	0	6642	667	23	1		1	GOSR2	17	45009578	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	383116	45009578	36185632	16174	24325											
ITGB3	3690	broad.mit.edu	37	chr17	45367668	45367668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtgctgggaatagtccCgcggagagtccacctcattt	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45367668	A	A	45367668	1	1	9	0	1	0	0	0	0	0	0	0	7965	667	23	1		1	ITGB3	17	45367668	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	358090	45367668	35827542	16175	24326											
C17orf57	124989	broad.mit.edu	37	chr17	45438845	45438845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggtatccctataaacCgtgaaattttagaagaagtg	10	6	0	3	rs115917803	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45438845	A	A	45438845	3	1	9	1	0	0	0	0	1	0	0	0	1881	652	23	1	789	1	C17orf57	17	45438845	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71177	45438845	35756365	16176	24327											
C17orf57	124989	broad.mit.edu	37	chr17	45518064	45518064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatattgctaagcttaaccCaaactcaaaattttaggtag	5	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45518064	A	A	45518064	3	1	9	1	0	0	0	0	1	0	0	0	1881	594	21	2	2992	2	C17orf57	17	45518064	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79219	45518064	35677146	16177	24328											
NPEPPS	9520	broad.mit.edu	37	chr17	45663016	45663016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaagatggtgtgtgtgtcCgtgtttacactcctgttggc	12	8	0	1	rs3968300	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45663016	A	A	45663016	3	1	9	1	0	0	0	0	1	0	0	0	10670	652	23	1	821	1	NPEPPS	17	45663016	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	144952	45663016	35532194	16178	24329											
KPNB1	3837	broad.mit.edu	37	chr17	45740594	45740594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggctaattacagagccCatcatccttagtcgctattt	7	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45740594	A	A	45740594	1	1	9	0	1	0	0	0	0	0	0	0	8506	609	21	2		2	KPNB1	17	45740594	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	77578	45740594	35454616	16179	24330											
SP2	6668	broad.mit.edu	37	chr17	46000436	46000436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtagcagccctgcatccCgtgctccccatctgagtggg	11	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46000436	A	A	46000436	3	1	9	1	0	0	0	0	1	0	0	0	15078	652	23	1	1182	1	SP2	17	46000436	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	259842	46000436	35194774	16180	24331											
PNPO	55163	broad.mit.edu	37	chr17	46022025	46022025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgctgaagggcttcGggaaagatggcttccgcttc	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46022025	T	T	46022025	3	4	9	1	0	0	0	0	1	0	0	0	12267	1116	39	1	317	1	PNPO	17	46022025	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21589	46022025	35173185	16181	24332											
NFE2L1	4779	broad.mit.edu	37	chr17	46133826	46133826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttttgactatagtcacCgccagaaggagcaggatgtg	13	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46133826	A	A	46133826	3	1	9	1	0	0	0	0	1	0	0	0	10462	652	23	1	595	1	NFE2L1	17	46133826	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111801	46133826	35061384	16182	24333											
HOXB6	3216	broad.mit.edu	37	chr17	46673805	46673805	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttcttcctcctcctcGgcactgagctgagacgcgct	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46673805	T	T	46673805	2	4	9	1	0	0	0	0	0	0	0	1	7372	1103	39	1		1	HOXB6	17	46673805	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	539979	46673805	34521405	16183	24334											
TTLL6	284076	broad.mit.edu	37	chr17	46863540	46863540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttacctgtttggaggcttGggtggcggccttgtctttct	14	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46863540	T	T	46863540	3	4	9	1	0	0	0	0	1	0	0	0	16857	1357	47	2	944	2	TTLL6	17	46863540	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	189735	46863540	34331670	16184	24335											
ZNF652	22834	broad.mit.edu	37	chr17	47390144	47390144	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttctgcatatccatGgacgatcttgatatgttcat	6	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47390144	C	C	47390144	3	2	9	1	0	0	0	0	1	0	0	0	18192	1348	47	4	872	4	ZNF652	17	47390144	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	526604	47390144	33805066	16185	24336											
PHB	5245	broad.mit.edu	37	chr17	47484201	47484201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttctgtgaactccttccCgaaggtcagatgtgtctaag	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47484201	A	A	47484201	3	1	9	1	0	0	0	0	1	0	0	0	11909	652	23	1	300	1	PHB	17	47484201	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94057	47484201	33711009	16186	24337											
NGFR	4804	broad.mit.edu	37	chr17	47583613	47583613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactccagctcctgcgtcccGggtgcccaaaagagcagacg	12	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47583613	T	T	47583613	1	4	9	0	1	0	0	0	0	0	0	0	10491	1131	39	1		1	NGFR	17	47583613	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	99412	47583613	33611597	16187	24338											
SPOP	8405	broad.mit.edu	37	chr17	47677605	47677605	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgctgttttaaaagtctGgggccacaatgcagtctctt	10	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47677605	T	T	47677605	1	4	9	0	1	0	0	0	0	0	0	0	15202	1363	47	2		2	SPOP	17	47677605	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	93992	47677605	33517605	16188	24339											
MYST2	11143	broad.mit.edu	37	chr17	47874183	47874183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctaccagaagagtgaccCgtagtcagcagcagcctacc	9	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47874183	A	A	47874183	3	1	9	1	0	0	0	0	1	0	0	0	10197	652	23	1	245	1	MYST2	17	47874183	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	196578	47874183	33321027	16189	24340											
DLX4	1748	broad.mit.edu	37	chr17	48051060	48051060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctttccccttttcttccCgaaggtaaagatctggtttc	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48051060	A	A	48051060	1	1	9	0	1	0	0	0	0	0	0	0	4613	667	23	1		1	DLX4	17	48051060	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	176877	48051060	33144150	16190	24341											
ITGA3	3675	broad.mit.edu	37	chr17	48166346	48166346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatctcagtgcagagagatGggatgcgtttcggtcaagag	15	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48166346	T	T	48166346	1	4	9	0	1	0	0	0	0	0	0	0	7947	1363	47	2		2	ITGA3	17	48166346	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	115286	48166346	33028864	16191	24342											
ITGA3	3675	broad.mit.edu	37	chr17	48166495	48166495	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacttctttaagcggaccCgctattatcagatcatgccc	8	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48166495	A	A	48166495	1	1	9	0	1	0	0	0	0	0	0	0	7947	652	23	1		1	ITGA3	17	48166495	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	149	48166495	33028715	16192	24343											
PPP1R9B	84687	broad.mit.edu	37	chr17	48216821	48216821	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttgtgcaccagcttctcGggctccatgtccacagggga	11	13	1	0	rs72840637	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48216821	T	T	48216821	2	4	9	1	0	0	0	0	0	0	0	1	12480	1103	39	1		1	PPP1R9B	17	48216821	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50326	48216821	32978389	16193	24344											
MYCBPAP	84073	broad.mit.edu	37	chr17	48595978	48595978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtcaaagcaaaaagcccCaaaagaagagaagagacctc	9	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48595978	A	A	48595978	3	1	9	1	0	0	0	0	1	0	0	0	10113	594	21	2	692	2	MYCBPAP	17	48595978	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	379157	48595978	32599232	16194	24345											
SPATA20	64847	broad.mit.edu	37	chr17	48627450	48627450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaaaatgatggctaacGggggcatccgggaccatgtg	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48627450	T	T	48627450	3	4	9	1	0	0	0	0	1	0	0	0	15122	1116	39	1	997	1	SPATA20	17	48627450	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31472	48627450	32567760	16195	24346											
SPATA20	64847	broad.mit.edu	37	chr17	48627845	48627845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttgccaccttccacctGggcctccccagtgacctctc	7	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48627845	T	T	48627845	1	4	9	0	1	0	0	0	0	0	0	0	15122	1363	47	2		2	SPATA20	17	48627845	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	395	48627845	32567365	16196	24347											
SPATA20	64847	broad.mit.edu	37	chr17	48628181	48628181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggttcagcagctcctccCggagcctgtgttgggtgcca	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48628181	A	A	48628181	3	1	9	1	0	0	0	0	1	0	0	0	15122	652	23	1	1328	1	SPATA20	17	48628181	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	336	48628181	32567029	16197	24348											
SPAG9	9043	broad.mit.edu	37	chr17	49048171	49048171	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggccctgctttgtcaccCgtcagatccgtgccactact	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49048171	A	A	49048171	2	1	9	1	0	0	0	0	0	0	0	1	15101	639	23	1		1	SPAG9	17	49048171	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	419990	49048171	32147039	16198	24349											
SPAG9	9043	broad.mit.edu	37	chr17	49059837	49059837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatagtctaatagtcttcGgataatacaaattcaataaa	4	5	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49059837	T	T	49059837	1	4	9	0	1	0	0	0	0	0	0	0	15101	1131	39	1		1	SPAG9	17	49059837	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11666	49059837	32135373	16199	24350											
NME1-NME2	654364	broad.mit.edu	37	chr17	49232952	49232952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggataatccgcttgagacGgatgacgctgtaggcaagtg	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49232952	T	T	49232952	1	4	9	0	1	0	0	0	0	0	0	0	10585	1131	39	1		1	NME1-NME2	17	49232952	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	173115	49232952	31962258	16200	24351											
C17orf67	339210	broad.mit.edu	37	chr17	54892245	54892245	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacccgcattggctcatcGgggaatccgggtttgcttgg	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54892245	T	T	54892245	2	4	9	1	0	0	0	0	0	0	0	1	1891	1103	39	1		1	C17orf67	17	54892245	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5659293	54892245	26302965	16201	24352											
DGKE	8526	broad.mit.edu	37	chr17	54912108	54912108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagggatggcgagctcGgggtgcaccgcctgtttctt	18	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54912108	T	T	54912108	1	4	9	0	1	0	0	0	0	0	0	0	4508	1131	39	1		1	DGKE	17	54912108	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19863	54912108	26283102	16202	24353											
MSI2	124540	broad.mit.edu	37	chr17	55335715	55335715	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagttagattccaagacGgtaggttgctttttgttgtt	11	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55335715	T	T	55335715	2	4	9	1	0	0	0	0	0	0	0	1	9970	1130	39	1		1	MSI2	17	55335715	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	423607	55335715	25859495	16203	24354											
MRPS23	51649	broad.mit.edu	37	chr17	55918544	55918544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacttataaaatggcttacCgttgacaggtagacttgaag	11	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55918544	A	A	55918544	3	1	9	1	0	0	0	0	1	0	0	0	9928	666	23	1	291	1	MRPS23	17	55918544	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	582829	55918544	25276666	16204	24355											
OR4D2	124538	broad.mit.edu	37	chr17	56247868	56247868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacccccatgctcaacccCatgatctataccctgaggaa	6	15	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247868	A	A	56247868	2	1	9	1	0	0	0	0	0	0	0	1	11150	581	21	2		2	OR4D2	17	56247868	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	329324	56247868	24947342	16205	24356											
LPO	4025	broad.mit.edu	37	chr17	56326366	56326366	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccatttcctgcctcccacGggtgcctgtgaatggagaaa	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56326366	C	C	56326366	1	2	9	0	1	0	0	0	0	0	0	0	9009	1131	39	4		4	LPO	17	56326366	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78498	56326366	24868844	16206	24357											
LPO	4025	broad.mit.edu	37	chr17	56332271	56332271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactaaagagactcaaccCtcagtgggatggagagaagc	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56332271	A	A	56332271	3	1	9	1	0	0	0	0	1	0	0	0	9009	681	24	2	1235	2	LPO	17	56332271	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5905	56332271	24862939	16207	24358											
MTMR4	9110	broad.mit.edu	37	chr17	56573280	56573280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccatctaaagtcctaccCagctcatcctgggcagaagg	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56573280	A	A	56573280	2	1	9	1	0	0	0	0	0	0	0	1	10040	581	21	2		2	MTMR4	17	56573280	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	241009	56573280	24621930	16208	24359											
C17orf47	284083	broad.mit.edu	37	chr17	56620977	56620977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtaagacaaaatcctacGgggaactctgactccttggg	12	9	1	2	rs142057363		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56620977	T	T	56620977	3	4	9	1	0	0	0	0	1	0	0	0	1874	1116	39	1	1149	1	C17orf47	17	56620977	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47697	56620977	24574233	16209	24360											
TEX14	56155	broad.mit.edu	37	chr17	56676614	56676614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagtgaactgagtgaacCgttttgccagtcccagtcat	11	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56676614	A	A	56676614	3	1	9	1	0	0	0	0	1	0	0	0	15900	652	23	1	2463	1	TEX14	17	56676614	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55637	56676614	24518596	16210	24361											
TEX14	56155	broad.mit.edu	37	chr17	56738123	56738123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgatctggtaacactcCatgtttctgatgttgatcat	7	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56738123	A	A	56738123	1	1	9	0	1	0	0	0	0	0	0	0	15900	609	21	2		2	TEX14	17	56738123	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	61509	56738123	24457087	16211	24362											
PPM1E	22843	broad.mit.edu	37	chr17	57043118	57043118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgagatttgctgcagctGggtgaaagacttccccctcc	10	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57043118	T	T	57043118	3	4	9	1	0	0	0	0	1	0	0	0	12439	1357	47	2	657	2	PPM1E	17	57043118	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	304995	57043118	24152092	16212	24363											
TRIM37	4591	broad.mit.edu	37	chr17	57109390	57109390	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaactactggtagcagcGgagcataaatgtgttcttct	10	7	2	0	rs142101613	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57109390	T	T	57109390	2	4	9	1	0	0	0	0	0	0	0	1	16635	1103	39	1		1	TRIM37	17	57109390	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66272	57109390	24085820	16213	24364											
C17orf71	55181	broad.mit.edu	37	chr17	57290206	57290206	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgctcctccagattcGgatgctgataaacttaaaga	7	11	1	3	rs114305481	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57290206	T	T	57290206	2	4	9	1	0	0	0	0	0	0	0	1	1894	1103	39	1		1	C17orf71	17	57290206	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	180816	57290206	23905004	16214	24365											
C17orf71	55181	broad.mit.edu	37	chr17	57290243	57290243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaagaacctcaaaccCaaggagagagcacgagcctg	10	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57290243	A	A	57290243	3	1	9	1	0	0	0	0	1	0	0	0	1894	595	21	2	2069	2	C17orf71	17	57290243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37	57290243	23904967	16215	24366											
DHX40	79665	broad.mit.edu	37	chr17	57676853	57676853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttaaacaggtgattgcCgtaatgttttttttcttgag	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57676853	A	A	57676853	1	1	9	0	1	0	0	0	0	0	0	0	4552	667	23	1		1	DHX40	17	57676853	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	386610	57676853	23518357	16216	24367											
CLTC	1213	broad.mit.edu	37	chr17	57724977	57724977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccagattatcaattacCgtacagatgcaaaacaaaag	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57724977	A	A	57724977	3	1	9	1	0	0	0	0	1	0	0	0	3598	652	23	1	479	1	CLTC	17	57724977	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48124	57724977	23470233	16217	24368											
USP32	84669	broad.mit.edu	37	chr17	58260531	58260531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccaggcctcacctttcGggctgctgatgatgttagcg	12	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58260531	T	T	58260531	3	4	9	1	0	0	0	0	1	0	0	0	17190	1116	39	1	712	1	USP32	17	58260531	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	535554	58260531	22934679	16218	24369											
USP32	84669	broad.mit.edu	37	chr17	58267963	58267963	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcgaaggtgaagggctgtGggatcccaatccacagcgat	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58267963	T	T	58267963	2	4	9	1	0	0	0	0	0	0	0	1	17190	1335	47	2		2	USP32	17	58267963	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7432	58267963	22927247	16219	24370											
USP32	84669	broad.mit.edu	37	chr17	58299873	58299873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgaatcagctgtggagttCgttttaatcgtcctccttct	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58299873	A	A	58299873	3	1	9	1	0	0	0	0	1	0	0	0	17190	884	31	3	3248	3	USP32	17	58299873	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31910	58299873	22895337	16220	24371											
USP32	84669	broad.mit.edu	37	chr17	58348783	58348783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatcaaatcgtccagtccGggattgagccttcaataacc	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58348783	T	T	58348783	2	4	9	1	0	0	0	0	0	0	0	1	17190	1115	39	1		1	USP32	17	58348783	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	48910	58348783	22846427	16221	24372											
APPBP2	10513	broad.mit.edu	37	chr17	58539253	58539253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtatcagaatattttGggtgtttggatccaaaatga	11	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58539253	T	T	58539253	3	4	9	1	0	0	0	0	1	0	0	0	818	1348	47	2	927	2	APPBP2	17	58539253	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	190470	58539253	22655957	16222	24373											
BCAS3	54828	broad.mit.edu	37	chr17	58824608	58824608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttcgacatggcccaattcGagcggctagaatcttgcctg	11	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58824608	T	T	58824608	3	4	9	1	0	0	0	0	1	0	0	0	1357	1058	37	3	389	3	BCAS3	17	58824608	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	285355	58824608	22370602	16223	24374											
BCAS3	54828	broad.mit.edu	37	chr17	58980002	58980002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattcgatgtcatcagtccCgtggtggagcctgtggagac	14	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58980002	A	A	58980002	3	1	9	1	0	0	0	0	1	0	0	0	1357	652	23	1	798	1	BCAS3	17	58980002	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	155394	58980002	22215208	16224	24375											
BRIP1	83990	broad.mit.edu	37	chr17	59861786	59861786	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacagcagaaaaatgtccCtataagaaattaccatatta	5	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59861786	A	A	59861786	5	1	9	1	0	0	0	0	0	0	1	0	1523	695	24	2	2316	2	BRIP1	17	59861786	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	881784	59861786	21333424	16225	24376											
MED13	9969	broad.mit.edu	37	chr17	60024339	60024339	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtttactgtgaagcagctCgtcagattgcactgaaggca	12	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60024339	A	A	60024339	4	1	9	1	0	0	0	0	0	1	0	0	9523	893	31	3	201	3	MED13	17	60024339	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	162553	60024339	21170871	16226	24377											
MED13	9969	broad.mit.edu	37	chr17	60050149	60050149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaggaccctgaacaccCcaaggtcttactgttctttt	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60050149	A	A	60050149	3	1	9	1	0	0	0	0	1	0	0	0	9523	624	22	2	2674	2	MED13	17	60050149	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25810	60050149	21145061	16227	24378											
MED13	9969	broad.mit.edu	37	chr17	60108896	60108896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcacttggtggacaccCaagcaagaagatgaacagtg	13	9	0	3	rs143538495	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60108896	A	A	60108896	3	1	9	1	0	0	0	0	1	0	0	0	9523	593	21	2	5706	2	MED13	17	60108896	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58747	60108896	21086314	16228	24379											
MARCH10	162333	broad.mit.edu	37	chr17	60814343	60814343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagacattcttcagactGggtttcctcttcagtgtcat	7	12	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60814343	T	T	60814343	3	4	9	1	0	0	0	0	1	0	0	0	9391	1357	47	2	1564	2	MARCH10	17	60814343	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	705447	60814343	20380867	16229	24380											
TANC2	26115	broad.mit.edu	37	chr17	61432499	61432499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccagtcttcctttgaccGggtgatgcctctcctgaatg	9	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61432499	T	T	61432499	3	4	9	1	0	0	0	0	1	0	0	0	15664	1116	39	1	2154	1	TANC2	17	61432499	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	618156	61432499	19762711	16230	24381											
TANC2	26115	broad.mit.edu	37	chr17	61457113	61457113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttgccttctggttttccCgccaagagggaaaactaaac	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61457113	A	A	61457113	3	1	9	1	0	0	0	0	1	0	0	0	15664	652	23	1	2445	1	TANC2	17	61457113	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24614	61457113	19738097	16231	24382											
ACE	1636	broad.mit.edu	37	chr17	61561147	61561147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaagctggatggtgcctGggtaaggaacccctgttcct	14	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61561147	T	T	61561147	1	4	9	0	1	0	0	0	0	0	0	0	136	1363	47	2		2	ACE	17	61561147	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	104034	61561147	19634063	16232	24383											
TACO1	51204	broad.mit.edu	37	chr17	61683636	61683636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacatgtgggaaggaattGggaaacaggaaaatgtgctt	14	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61683636	T	T	61683636	1	4	9	0	1	0	0	0	0	0	0	0	15623	1363	47	2		2	TACO1	17	61683636	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	122489	61683636	19511574	16233	24384											
MAP3K3	4215	broad.mit.edu	37	chr17	61769123	61769123	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccagttgaaggcttacGgtgctctgacagagagcgtg	14	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61769123	T	T	61769123	3	4	9	1	0	0	0	0	1	0	0	0	9343	1116	39	1	1526	1	MAP3K3	17	61769123	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85487	61769123	19426087	16234	24385											
CCDC47	57003	broad.mit.edu	37	chr17	61829437	61829437	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaagttctcttctactcGggcacggttcttatctgctt	8	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61829437	T	T	61829437	2	4	9	1	0	0	0	0	0	0	0	1	2846	1124	39	1		1	CCDC47	17	61829437	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60314	61829437	19365773	16235	24386											
FTSJ3	117246	broad.mit.edu	37	chr17	61897676	61897676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacgtgcattgatttccCgccagcgtttccggtaatgc	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61897676	A	A	61897676	3	1	9	1	0	0	0	0	1	0	0	0	6149	652	23	1	360	1	FTSJ3	17	61897676	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	68239	61897676	19297534	16236	24387											
FTSJ3	117246	broad.mit.edu	37	chr17	61898662	61898662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccccaatttagagaaatGgttcaagccaccgcttcctt	6	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61898662	T	T	61898662	1	4	9	0	1	0	0	0	0	0	0	0	6149	1363	47	2		2	FTSJ3	17	61898662	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	986	61898662	19296548	16237	24388											
FTSJ3	117246	broad.mit.edu	37	chr17	61898803	61898803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtggcagcttctgtcccCgaagaagcctctgttccctt	9	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61898803	A	A	61898803	2	1	9	1	0	0	0	0	0	0	0	1	6149	639	23	1		1	FTSJ3	17	61898803	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	141	61898803	19296407	16238	24389											
FTSJ3	117246	broad.mit.edu	37	chr17	61899012	61899012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaagctgccctgtgataGgagaacatcagctgcccttc	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61899012	T	T	61899012	1	4	9	0	1	0	0	0	0	0	0	0	6149	1015	35	2		2	FTSJ3	17	61899012	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	209	61899012	19296198	16239	24390											
FTSJ3	117246	broad.mit.edu	37	chr17	61901533	61901533	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctccttagaGggctgctttgtggttccagc	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61901533	T	T	61901533	2	4	9	1	0	0	0	0	0	0	0	1	6149	987	35	2		2	FTSJ3	17	61901533	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2521	61901533	19293677	16240	24391											
FTSJ3	117246	broad.mit.edu	37	chr17	61903712	61903712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagagccatccttttccccCtcttggcaactgatctctca	5	16	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61903712	A	A	61903712	1	1	9	0	1	0	0	0	0	0	0	0	6149	696	24	2		2	FTSJ3	17	61903712	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2179	61903712	19291498	16241	24392											
CSH2	1443	broad.mit.edu	37	chr17	61949581	61949581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaagcagtagagcagccCgtagttcttgagcagtgcgt	13	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61949581	A	A	61949581	3	1	9	1	0	0	0	0	1	0	0	0	3975	652	23	1	98	1	CSH2	17	61949581	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45869	61949581	19245629	16242	24393											
GH2	2689	broad.mit.edu	37	chr17	61958661	61958661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcccattacttcccagcGggggaaagtcaccccttcct	7	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958661	T	T	61958661	1	4	9	0	1	0	0	0	0	0	0	0	6432	1131	39	1		1	GH2	17	61958661	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9080	61958661	19236549	16243	24394											
GH2	2689	broad.mit.edu	37	chr17	61959190	61959190	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagctgtccacaggaccCtgagtggttcggggagttgg	18	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61959190	A	A	61959190	1	1	9	1	0	0	0	0	0	0	0	0	6432	696	24	2		2	GH2	17	61959190	Translation_Start_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	529	61959190	19236020	16244	24395											
TEX2	55852	broad.mit.edu	37	chr17	62291281	62291281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcaggggcctgggacacGgacagtccatctgccaggac	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62291281	T	T	62291281	2	4	9	1	0	0	0	0	0	0	0	1	15903	1103	39	1		1	TEX2	17	62291281	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	332091	62291281	18903929	16245	24396											
TEX2	55852	broad.mit.edu	37	chr17	62291376	62291376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttccttggcttccagccCtgttacaatgctttggtcat	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62291376	A	A	62291376	3	1	9	1	0	0	0	0	1	0	0	0	15903	681	24	2	3246	2	TEX2	17	62291376	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	62291376	18903834	16246	24397											
DDX5	1655	broad.mit.edu	37	chr17	62500173	62500173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagagcaactggccatccCtgagcttgaatagcagtggg	12	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62500173	A	A	62500173	3	1	9	1	0	0	0	0	1	0	0	0	4400	680	24	2	1515	2	DDX5	17	62500173	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	208797	62500173	18695037	16247	24398											
RGS9	8787	broad.mit.edu	37	chr17	63186347	63186347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaagtcttctgtgtccCtgggagggtatgtccctgat	13	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63186347	A	A	63186347	3	1	9	1	0	0	0	0	1	0	0	0	13422	680	24	2	781	2	RGS9	17	63186347	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	686174	63186347	18008863	16248	24399											
PRKCA	5578	broad.mit.edu	37	chr17	64683267	64683267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatccctatggatccaaacGggctttcagatccttatgtg	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64683267	T	T	64683267	3	4	9	1	0	0	0	0	1	0	0	0	12613	1116	39	1	590	1	PRKCA	17	64683267	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1496920	64683267	16511943	16249	24400											
PRKCA	5578	broad.mit.edu	37	chr17	64683345	64683345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaaaaccaaaaccatcCgctccacactaaatccgcag	4	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64683345	A	A	64683345	3	1	9	1	0	0	0	0	1	0	0	0	12613	652	23	1	668	1	PRKCA	17	64683345	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78	64683345	16511865	16250	24401											
PRKCA	5578	broad.mit.edu	37	chr17	64738727	64738727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggactctgatgttaaccCggttccttgcagggatctga	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64738727	A	A	64738727	1	1	9	0	1	0	0	0	0	0	0	0	12613	667	23	1		1	PRKCA	17	64738727	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	55382	64738727	16456483	16251	24402											
CACNG5	27091	broad.mit.edu	37	chr17	64876751	64876751	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttatcctgaacaacatcGgacacatccgtccccaccgg	8	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64876751	T	T	64876751	4	4	9	1	0	0	0	0	0	1	0	0	2586	1117	39	1	371	1	CACNG5	17	64876751	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138024	64876751	16318459	16252	24403											
CACNG4	27092	broad.mit.edu	37	chr17	65026919	65026919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggacgtgtcgcccatGggcctgaagatcacaggggc	15	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65026919	T	T	65026919	3	4	9	1	0	0	0	0	1	0	0	0	2585	1348	47	2	797	2	CACNG4	17	65026919	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150168	65026919	16168291	16253	24404											
HELZ	9931	broad.mit.edu	37	chr17	65074659	65074659	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacacctcgaggttctcCgacttcagttgatcctcagg	10	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65074659	A	A	65074659	2	1	9	1	0	0	0	0	0	0	0	1	7116	639	23	1		1	HELZ	17	65074659	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	47740	65074659	16120551	16254	24405											
HELZ	9931	broad.mit.edu	37	chr17	65124957	65124957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgacacagggcaataaacCgttcccaaaatttcctacag	6	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65124957	A	A	65124957	3	1	9	1	0	0	0	0	1	0	0	0	7116	652	23	1	2671	1	HELZ	17	65124957	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50298	65124957	16070253	16255	24406											
PSMD12	5718	broad.mit.edu	37	chr17	65353523	65353523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactactgcaactaagatacGggatgtcgataccatatcgg	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65353523	T	T	65353523	3	4	9	1	0	0	0	0	1	0	0	0	12801	1116	39	1	1213	1	PSMD12	17	65353523	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	228566	65353523	15841687	16256	24407											
NOL11	25926	broad.mit.edu	37	chr17	65739902	65739902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagattgaagtaagttttcGggagctacagaaattaaatc	9	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65739902	T	T	65739902	3	4	9	1	0	0	0	0	1	0	0	0	10616	1116	39	1	2157	1	NOL11	17	65739902	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	386379	65739902	15455308	16257	24408											
BPTF	2186	broad.mit.edu	37	chr17	65942082	65942082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactgtttcatccccatccCgtcctcagctacaaatacag	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65942082	A	A	65942082	3	1	9	1	0	0	0	0	1	0	0	0	1504	652	23	1	7726	1	BPTF	17	65942082	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	202180	65942082	15253128	16258	24409											
KPNA2	3838	broad.mit.edu	37	chr17	66038421	66038421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctctgttggcatctcccCatgctcacatcagtgaacaa	6	13	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66038421	A	A	66038421	3	1	9	1	0	0	0	0	1	0	0	0	8501	594	21	2	537	2	KPNA2	17	66038421	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	96339	66038421	15156789	16259	24410											
KPNA2	3838	broad.mit.edu	37	chr17	66040162	66040162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaatcatggattagtccCattccttgtcagtgttctct	8	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66040162	A	A	66040162	3	1	9	1	0	0	0	0	1	0	0	0	8501	594	21	2	1165	2	KPNA2	17	66040162	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1741	66040162	15155048	16260	24411											
AMZ2	51321	broad.mit.edu	37	chr17	66247326	66247326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgacagatggtattcCgtttttggcattgttgttag	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66247326	A	A	66247326	1	1	9	0	1	0	0	0	0	0	0	0	597	667	23	1		1	AMZ2	17	66247326	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	207164	66247326	14947884	16261	24412											
SLC16A6	9120	broad.mit.edu	37	chr17	66268904	66268904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaactaaagcagtatccCagacctgtgaaagaaaagtc	8	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66268904	A	A	66268904	2	1	9	1	0	0	0	0	0	0	0	1	14525	581	21	2		2	SLC16A6	17	66268904	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21578	66268904	14926306	16262	24413											
ARSG	22901	broad.mit.edu	37	chr17	66347756	66347756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccatatagccatgatatGggctgtactgatactccagg	9	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66347756	T	T	66347756	3	4	9	1	0	0	0	0	1	0	0	0	996	1348	47	2	509	2	ARSG	17	66347756	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78852	66347756	14847454	16263	24414											
ARSG	22901	broad.mit.edu	37	chr17	66397522	66397522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgttccaccccaacagcGgggcagctggagagtttgga	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66397522	T	T	66397522	3	4	9	1	0	0	0	0	1	0	0	0	996	1116	39	1	1272	1	ARSG	17	66397522	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49766	66397522	14797688	16264	24415											
PRKAR1A	5573	broad.mit.edu	37	chr17	66521096	66521096	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattgatcaaggagagacGgatgtaagatttaccaatat	11	4	1	4	rs117639566	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66521096	T	T	66521096	2	4	9	1	0	0	0	0	0	0	0	1	12609	1103	39	1		1	PRKAR1A	17	66521096	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	123574	66521096	14674114	16265	24416											
ABCA10	10349	broad.mit.edu	37	chr17	67151924	67151924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatctgagcattttattaaGggtctaatccctgctgttca	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67151924	T	T	67151924	1	4	9	0	1	0	0	0	0	0	0	0	29	1015	35	2		2	ABCA10	17	67151924	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	630828	67151924	14043286	16266	24417											
ABCA5	23461	broad.mit.edu	37	chr17	67283804	67283804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtactgaacactgtcaccCgattggcttttctgtatttt	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67283804	A	A	67283804	3	1	9	1	0	0	0	0	1	0	0	0	35	652	23	1	3037	1	ABCA5	17	67283804	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	131880	67283804	13911406	16267	24418											
SDK2	54549	broad.mit.edu	37	chr17	71335116	71335116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggtgtgtcagtggcccCgtagggacaggccattgtgg	17	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71335116	A	A	71335116	1	1	9	0	1	0	0	0	0	0	0	0	14082	667	23	1		1	SDK2	17	71335116	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4051312	71335116	9860094	16268	24419											
SDK2	54549	broad.mit.edu	37	chr17	71427711	71427711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcaggtgtaggtcccCgcatcggagatgtgtgtggg	18	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71427711	A	A	71427711	2	1	9	1	0	0	0	0	0	0	0	1	14082	639	23	1		1	SDK2	17	71427711	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	92595	71427711	9767499	16269	24420											
DNAI2	64446	broad.mit.edu	37	chr17	72287263	72287263	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggtggctgctacaatGgacagataggtaaggaggga	16	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72287263	T	T	72287263	4	4	9	1	0	0	0	0	0	1	0	0	4650	1349	47	2	733	2	DNAI2	17	72287263	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	859552	72287263	8907947	16270	24421											
CD300LB	124599	broad.mit.edu	37	chr17	72519049	72519049	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtggttcctggggaagGggatgcagtggtcagagccc	18	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72519049	A	A	72519049	1	1	9	0	1	0	0	0	0	0	0	0	3029	1247	43	4		4	CD300LB	17	72519049	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	231786	72519049	8676161	16271	24422											
RAB37	326624	broad.mit.edu	37	chr17	72736967	72736967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgatccaattcaaagacGgggccttcctgtccggaacc	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72736967	T	T	72736967	3	4	9	1	0	0	0	0	1	0	0	0	13035	1116	39	1	463	1	RAB37	17	72736967	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	217918	72736967	8458243	16272	24423											
TMEM104	54868	broad.mit.edu	37	chr17	72832379	72832379	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcgcgctgtgacgtcgtGggcctggccgctgtgcgctt	16	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72832379	T	T	72832379	2	4	9	1	0	0	0	0	0	0	0	1	16141	1335	47	2		2	TMEM104	17	72832379	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	95412	72832379	8362831	16273	24424											
GRIN2C	2905	broad.mit.edu	37	chr17	72846059	72846059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgatggccatgtctgccCgcttgtagtacacctggggg	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72846059	A	A	72846059	3	1	9	1	0	0	0	0	1	0	0	0	6847	652	23	1	2224	1	GRIN2C	17	72846059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13680	72846059	8349151	16274	24425											
NUP85	79902	broad.mit.edu	37	chr17	73221869	73221869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatcatttcctagtgactcGgctcttgtactccaatccca	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73221869	T	T	73221869	3	4	9	1	0	0	0	0	1	0	0	0	10865	1116	39	1	970	1	NUP85	17	73221869	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	375810	73221869	7973341	16275	24426											
MRPS7	51081	broad.mit.edu	37	chr17	73259550	73259550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaactgtgagcctatgattGggctggtacccatcctcaag	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73259550	T	T	73259550	3	4	9	1	0	0	0	0	1	0	0	0	9942	1348	47	2	483	2	MRPS7	17	73259550	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37681	73259550	7935660	16276	24427											
GRB2	2885	broad.mit.edu	37	chr17	73316467	73316467	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttagacgttccggttcacGggggtgacataattgcgggg	15	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73316467	C	C	73316467	2	2	9	1	0	0	0	0	0	0	0	1	6824	1103	39	4		4	GRB2	17	73316467	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56917	73316467	7878743	16277	24428											
TSEN54	283989	broad.mit.edu	37	chr17	73513706	73513706	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttaccagctgctgctgacCgaccacactgtgaccttcct	8	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73513706	A	A	73513706	2	1	9	1	0	0	0	0	0	0	0	1	16739	639	23	1		1	TSEN54	17	73513706	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	197239	73513706	7681504	16278	24429											
RECQL5	9400	broad.mit.edu	37	chr17	73624385	73624385	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaggagacgccaggagcGgagagctggaaggggtcttg	18	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73624385	T	T	73624385	2	4	9	1	0	0	0	0	0	0	0	1	13311	1103	39	1		1	RECQL5	17	73624385	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	110679	73624385	7570825	16279	24430											
SAP30BP	29115	broad.mit.edu	37	chr17	73667939	73667939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacctgaggctgatgaccCaaaggtatttggtgttggct	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73667939	A	A	73667939	3	1	9	1	0	0	0	0	1	0	0	0	13946	594	21	2	270	2	SAP30BP	17	73667939	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	43554	73667939	7527271	16280	24431											
ITGB4	3691	broad.mit.edu	37	chr17	73736447	73736447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttccttagtgccctacGggctgtccttgcgcctggcc	11	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73736447	T	T	73736447	3	4	9	1	0	0	0	0	1	0	0	0	7967	1116	39	1	2533	1	ITGB4	17	73736447	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	68508	73736447	7458763	16281	24432											
UNC13D	201294	broad.mit.edu	37	chr17	73832182	73832182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggccttgcctgcctcCgggatgccctgcagagacag	13	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73832182	A	A	73832182	2	1	9	1	0	0	0	0	0	0	0	1	17113	639	23	1		1	UNC13D	17	73832182	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	95735	73832182	7363028	16282	24433											
WBP2	23558	broad.mit.edu	37	chr17	73851356	73851356	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgatcactccgccgccctccGagtgattcttgttgagcgcc	10	16	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73851356	T	T	73851356	4	4	9	1	0	0	0	0	0	1	0	0	17386	1059	37	3	794	3	WBP2	17	73851356	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19174	73851356	7343854	16283	24434											
ACOX1	51	broad.mit.edu	37	chr17	73949480	73949480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaattctgggatctgaatGgggtaaaaactaggcctttg	14	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73949480	T	T	73949480	1	4	9	0	1	0	0	0	0	0	0	0	158	1363	47	2		2	ACOX1	17	73949480	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	98124	73949480	7245730	16284	24435											
ACOX1	51	broad.mit.edu	37	chr17	73951930	73951930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaaggcttatgggtccCgatttcacgaataggtacga	12	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73951930	A	A	73951930	3	1	9	1	0	0	0	0	1	0	0	0	158	652	23	1	1385	1	ACOX1	17	73951930	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2450	73951930	7243280	16285	24436											
ACOX1	51	broad.mit.edu	37	chr17	73975129	73975129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgaagctggcggaatccCgctccctgcgcaggtccggg	16	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73975129	A	A	73975129	3	1	9	1	0	0	0	0	1	0	0	0	158	652	23	1	2177	1	ACOX1	17	73975129	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23199	73975129	7220081	16286	24437											
EVPL	2125	broad.mit.edu	37	chr17	74003730	74003730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagcttctgcccagtgatGgggtccagcatgttcttggc	13	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74003730	T	T	74003730	2	4	9	1	0	0	0	0	0	0	0	1	5334	1335	47	2		2	EVPL	17	74003730	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28601	74003730	7191480	16287	24438											
SRP68	6730	broad.mit.edu	37	chr17	74060170	74060170	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacaagtgaaaccgttttcGgggttcagtgttggcttcct	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74060170	T	T	74060170	2	4	9	1	0	0	0	0	0	0	0	1	15274	1124	39	1		1	SRP68	17	74060170	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	56440	74060170	7135040	16288	24439											
SRP68	6730	broad.mit.edu	37	chr17	74068362	74068362	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttcgacacgtaatcattgcGagttaggcccgattactcta	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74068362	T	T	74068362	1	4	9	0	1	0	0	0	0	0	0	0	15274	1073	37	3		3	SRP68	17	74068362	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8192	74068362	7126848	16289	24440											
RNF157	114804	broad.mit.edu	37	chr17	74155597	74155597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggacggggtgaggggccCgttgagggcctccagaagag	21	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74155597	A	A	74155597	3	1	9	1	0	0	0	0	1	0	0	0	13565	652	23	1	948	1	RNF157	17	74155597	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87235	74155597	7039613	16290	24441											
RNF157	114804	broad.mit.edu	37	chr17	74161514	74161514	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcaggcacccagcaaacGggttacatgtgtctcacacg	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74161514	T	T	74161514	1	4	9	0	1	0	0	0	0	0	0	0	13565	1131	39	1		1	RNF157	17	74161514	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5917	74161514	7033696	16291	24442											
QRICH2	84074	broad.mit.edu	37	chr17	74272770	74272770	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccactcactgtcttttcGgaggatgcctggcagccttg	10	13	2	0	rs147137634	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74272770	T	T	74272770	2	4	9	1	0	0	0	0	0	0	0	1	12988	1124	39	1		1	QRICH2	17	74272770	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	111256	74272770	6922440	16292	24443											
QRICH2	84074	broad.mit.edu	37	chr17	74286115	74286115	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggctagcgtctttacGgtcttcagctgctcctgcag	10	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74286115	T	T	74286115	2	4	9	1	0	0	0	0	0	0	0	1	12988	1103	39	1		1	QRICH2	17	74286115	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13345	74286115	6909095	16293	24444											
UBE2O	63893	broad.mit.edu	37	chr17	74392594	74392594	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaactcccggaagctcttGggtggcccgtccttgccagc	11	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74392594	C	C	74392594	2	2	9	1	0	0	0	0	0	0	0	1	16994	1335	47	4		4	UBE2O	17	74392594	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	106479	74392594	6802616	16294	24445											
AANAT	15	broad.mit.edu	37	chr17	74465187	74465187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatctgagtggacactcGgggtgcagcagacagtggac	17	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74465187	T	T	74465187	1	4	9	0	1	0	0	0	0	0	0	0	18	1131	39	1		1	AANAT	17	74465187	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	72593	74465187	6730023	16295	24446											
SEC14L1	6397	broad.mit.edu	37	chr17	75187363	75187363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaaacgttttccaatcGggtcatcattaatgagcatt	7	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75187363	T	T	75187363	3	4	9	1	0	0	0	0	1	0	0	0	14094	1116	39	1	324	1	SEC14L1	17	75187363	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	722176	75187363	6007847	16296	24447											
SYNGR2	9144	broad.mit.edu	37	chr17	76166789	76166789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacaacaaaaacccaaaaGgggacagcagtagtgggaga	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76166789	T	T	76166789	1	4	9	0	1	0	0	0	0	0	0	0	15568	1015	35	2		2	SYNGR2	17	76166789	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	979426	76166789	5028421	16297	24448											
AFMID	125061	broad.mit.edu	37	chr17	76201598	76201598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttgctctccagctgaccCtgtgagttacttggccacca	9	14	1	2	rs150874256		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76201598	A	A	76201598	3	1	9	1	0	0	0	0	1	0	0	0	362	695	24	2	673	2	AFMID	17	76201598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34809	76201598	4993612	16298	24449											
DNAH17	8632	broad.mit.edu	37	chr17	76455260	76455260	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttggagcggatgaactcGgggtcgaacgtcgggttgcc	17	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76455260	T	T	76455260	2	4	9	1	0	0	0	0	0	0	0	1	4641	1103	39	1		1	DNAH17	17	76455260	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	253662	76455260	4739950	16299	24450											
DNAH17	8632	broad.mit.edu	37	chr17	76540063	76540063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctttctttcaaacagcGggttggccgaccagtcctgg	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76540063	T	T	76540063	3	4	9	1	0	0	0	0	1	0	0	0	4641	1116	39	1	11240	1	DNAH17	17	76540063	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84803	76540063	4655147	16300	24451											
CYTH1	9267	broad.mit.edu	37	chr17	76676357	76676357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcccctccaccacccgccCgtcagcctcggtcttgcagg	9	20	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76676357	A	A	76676357	3	1	9	1	0	0	0	0	1	0	0	0	4236	652	23	1	171	1	CYTH1	17	76676357	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136294	76676357	4518853	16301	24452											
CYTH1	9267	broad.mit.edu	37	chr17	76694411	76694411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgagtgaggtcattccCgtcgtcttctgggattttaa	12	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76694411	A	A	76694411	3	1	9	1	0	0	0	0	1	0	0	0	4236	652	23	1	465	1	CYTH1	17	76694411	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18054	76694411	4500799	16302	24453											
CYTH1	9267	broad.mit.edu	37	chr17	76697753	76697753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacctcaagaatactcacCgtagtgcctggacgagatta	8	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76697753	A	A	76697753	3	1	9	1	0	0	0	0	1	0	0	0	4236	666	23	1	791	1	CYTH1	17	76697753	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3342	76697753	4497457	16303	24454											
USP36	57602	broad.mit.edu	37	chr17	76795040	76795040	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaccacggtctcagtccGggcctgtctgctgtcttcaa	9	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76795040	T	T	76795040	2	4	9	1	0	0	0	0	0	0	0	1	17194	1115	39	1		1	USP36	17	76795040	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	97287	76795040	4400170	16304	24455											
TIMP2	7077	broad.mit.edu	37	chr17	76866912	76866912	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgagcctgggaaacgagccCtggaccgcgtctaggaacag	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76866912	G	G	76866912	1	3	9	0	1	0	0	0	0	0	0	0	16041	696	24	4		4	TIMP2	17	76866912	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	71872	76866912	4328298	16305	24456											
CBX8	57332	broad.mit.edu	37	chr17	77768512	77768512	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagtttgaggtcacgtcCgtgaccaccaccttctccag	8	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77768512	G	G	77768512	2	3	9	1	0	0	0	0	0	0	0	1	2750	661	23	4		4	CBX8	17	77768512	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	901600	77768512	3426698	16306	24457											
CBX4	8535	broad.mit.edu	37	chr17	77808708	77808708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcttgcccccaatccCgttgcccgtcacagcctctt	5	19	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77808708	A	A	77808708	3	1	9	1	0	0	0	0	1	0	0	0	2746	652	23	1	953	1	CBX4	17	77808708	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40196	77808708	3386502	16307	24458											
TBC1D16	125058	broad.mit.edu	37	chr17	77923486	77923486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcctccgcggctcggcGgggtgggccgggctggcccc	17	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77923486	T	T	77923486	1	4	9	0	1	0	0	0	0	0	0	0	15724	1131	39	1		1	TBC1D16	17	77923486	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	114778	77923486	3271724	16308	24459											
CCDC40	55036	broad.mit.edu	37	chr17	78032794	78032794	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaggtaaaagcagtcccCgcagctctcagtgttcgacc	11	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78032794	A	A	78032794	1	1	9	0	1	0	0	0	0	0	0	0	2839	667	23	1		1	CCDC40	17	78032794	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	109308	78032794	3162416	16309	24460											
RNF213	57674	broad.mit.edu	37	chr17	78318751	78318751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatttcctgtttcactgcGgggtaataaacccatcctgg	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78318751	T	T	78318751	3	4	9	1	0	0	0	0	1	0	0	0	13588	1116	39	1	7045	1	RNF213	17	78318751	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	285957	78318751	2876459	16310	24461											
RPTOR	57521	broad.mit.edu	37	chr17	78797061	78797061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggtgccgtgctccccCgccctccgtggcactgtgat	11	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78797061	A	A	78797061	1	1	9	0	1	0	0	0	0	0	0	0	13776	667	23	1		1	RPTOR	17	78797061	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	478310	78797061	2398149	16311	24462											
BAHCC1	57597	broad.mit.edu	37	chr17	79384860	79384860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccgtgcgcctcccctcGggcctgaggggtccctctct	12	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79384860	T	T	79384860	1	4	9	0	1	0	0	0	0	0	0	0	1301	1131	39	1		1	BAHCC1	17	79384860	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	587799	79384860	1810350	16312	24463											
BAHCC1	57597	broad.mit.edu	37	chr17	79411731	79411731	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaccagaacctgcccccCggcttccccgcctccgtggc	9	22	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79411731	A	A	79411731	2	1	9	1	0	0	0	0	0	0	0	1	1301	639	23	1		1	BAHCC1	17	79411731	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26871	79411731	1783479	16313	24464											
C17orf90	339229	broad.mit.edu	37	chr17	79632502	79632502	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacctctacgtggtctgtcCcgaattttctgcgcccatca	7	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79632502	G	G	79632502	3	3	9	1	0	0	0	0	1	0	0	0	1908	623	22	4	274	4	C17orf90	17	79632502	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	220771	79632502	1562708	16314	24465											
SLC25A10	1468	broad.mit.edu	37	chr17	79682551	79682551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccatctacgagactgtgcGggaccgtgtggccaagggca	15	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79682551	T	T	79682551	3	4	9	1	0	0	0	0	1	0	0	0	14586	1116	39	1	267	1	SLC25A10	17	79682551	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50049	79682551	1512659	16315	24466											
P4HB	5034	broad.mit.edu	37	chr17	79805010	79805010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaatgcagaagattctccCaatggcctccaatgtcagac	7	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79805010	A	A	79805010	1	1	9	0	1	0	0	0	0	0	0	0	11453	609	21	2		2	P4HB	17	79805010	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	122459	79805010	1390200	16316	24467											
ARHGDIA	396	broad.mit.edu	37	chr17	79827226	79827226	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggaaagagatttttatccGgtactccacaccctccttca	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79827226	T	T	79827226	2	4	9	1	0	0	0	0	0	0	0	1	892	1115	39	1		1	ARHGDIA	17	79827226	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	22216	79827226	1367984	16317	24468											
HEXDC	284004	broad.mit.edu	37	chr17	80393627	80393627	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagagcagaacagcacGgggaagttgtgcctgtcaca	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80393627	T	T	80393627	2	4	9	1	0	0	0	0	0	0	0	1	7142	1103	39	1		1	HEXDC	17	80393627	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	566401	80393627	801583	16318	24469											
NARF	26502	broad.mit.edu	37	chr17	80438939	80438939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaccagccctaaatatGggtgcccctctcccacagaa	6	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80438939	T	T	80438939	1	4	9	0	1	0	0	0	0	0	0	0	10261	1363	47	2		2	NARF	17	80438939	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45312	80438939	756271	16319	24470											
TBCD	6904	broad.mit.edu	37	chr17	80726300	80726300	+	Missense_Mutation	SNP	G	T	T													tggtttaattttttaggcttGggaaacccgctacatgcttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80726300	T	T	80726300	3	4	9	1	0	0	0	0	1	0	0	0	15755	1357	47	2	458	2	TBCD	17	80726300	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	287361	80726300	468910	16320	24471	161	2									
TBCD	6904	broad.mit.edu	37	chr17	80726308	80726308	+	Missense_Mutation	SNP	C	A	A													ttttttaggcttgggaaaccCgctacatgcttttgctctgg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80726308	A	A	80726308	3	1	9	1	0	0	0	0	1	0	0	0	15755	652	23	1	466	1	TBCD	17	80726308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	80726308	468902	16321	24472	161	2									
ZNF750	79755	broad.mit.edu	37	chr17	80789303	80789303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggtgagagctctgatctCgggtgaggccagtgacaggt	17	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80789303	A	A	80789303	3	1	9	1	0	0	0	0	1	0	0	0	18261	884	31	3	1151	3	ZNF750	17	80789303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62995	80789303	405907	16322	24473											
ZNF750	79755	broad.mit.edu	37	chr17	80789467	80789467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcttagggatcggcccCgggtgaggcaggaagtgtct	18	8	1	1	rs137910288		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80789467	A	A	80789467	2	1	9	1	0	0	0	0	0	0	0	1	18261	639	23	1		1	ZNF750	17	80789467	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	164	80789467	405743	16323	24474											
USP14	9097	broad.mit.edu	37	chr18	196828	196828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaggtttcctacatttacCgtacttactggaacatagtt	6	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196828	A	A	196828	1	1	9	0	1	0	0	0	0	0	0	0	17171	667	23	1		1	USP14	18	196828	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08		196828	77880420	16324	24475											
THOC1	9984	broad.mit.edu	37	chr18	216583	216583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaagtgagggcttctcCgtgctaatagtctcagggct	14	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216583	A	A	216583	3	1	9	1	0	0	0	0	1	0	0	0	15987	652	23	1	480	1	THOC1	18	216583	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19755	216583	77860665	16325	24476											
TYMS	7298	broad.mit.edu	37	chr18	662079	662079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttgtaagtggtgtctcGgggggatcaactgagatggc	16	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	662079	T	T	662079	1	4	9	0	1	0	0	0	0	0	0	0	16938	1131	39	1		1	TYMS	18	662079	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	445496	662079	77415169	16326	24477											
NDC80	10403	broad.mit.edu	37	chr18	2589219	2589219	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaggatttatttaatgtGgatgcttttaagctggaatc	10	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2589219	T	T	2589219	2	4	9	1	0	0	0	0	0	0	0	1	10337	1335	47	2		2	NDC80	18	2589219	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1927140	2589219	75488029	16327	24478											
EMILIN2	84034	broad.mit.edu	37	chr18	2908842	2908842	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctatagtagtgaagactCgatttgaacttgtgaggagc	11	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2908842	A	A	2908842	1	1	9	0	1	0	0	0	0	0	0	0	5136	899	31	3		3	EMILIN2	18	2908842	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	319623	2908842	75168406	16328	24479											
LPIN2	9663	broad.mit.edu	37	chr18	2951127	2951127	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgcagcagcagatgcGgcctgctcttccttcttact	8	14	4	1	rs150312425	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2951127	T	T	2951127	2	4	9	1	0	0	0	0	0	0	0	1	9006	1103	39	1		1	LPIN2	18	2951127	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	42285	2951127	75126121	16329	24480											
MYOM1	8736	broad.mit.edu	37	chr18	3134662	3134662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaccgtgagcccttcacGgggttgttgttacagggctc	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3134662	T	T	3134662	2	4	9	1	0	0	0	0	0	0	0	1	10185	1103	39	1		1	MYOM1	18	3134662	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	183535	3134662	74942586	16330	24481											
MYL12B	103910	broad.mit.edu	37	chr18	3272902	3272902	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattaaacaaccaccatgtcGagcaaaaaggcaaagaccaa	6	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3272902	T	T	3272902	2	4	9	1	0	0	0	0	0	0	0	1	10140	1045	37	3		3	MYL12B	18	3272902	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	138240	3272902	74804346	16331	24482											
TGIF1	7050	broad.mit.edu	37	chr18	3457453	3457453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatcagttcacaatttccCgccgtggggccaagatttct	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3457453	A	A	3457453	3	1	9	1	0	0	0	0	1	0	0	0	15948	652	23	1	813	1	TGIF1	18	3457453	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	184551	3457453	74619795	16332	24483											
DLGAP1	9229	broad.mit.edu	37	chr18	3502620	3502620	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgccaaatcctgggaggtGggtcttggatgagcattagg	15	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3502620	T	T	3502620	2	4	9	1	0	0	0	0	0	0	0	1	4599	1335	47	2		2	DLGAP1	18	3502620	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	45167	3502620	74574628	16333	24484											
DLGAP1	9229	broad.mit.edu	37	chr18	3534199	3534199	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcattacttactgtcttcGggcaggttgttttcccgttc	10	10	1	0	rs73939849	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3534199	T	T	3534199	2	4	9	1	0	0	0	0	0	0	0	1	4599	1103	39	1		1	DLGAP1	18	3534199	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31579	3534199	74543049	16334	24485											
DLGAP1	9229	broad.mit.edu	37	chr18	3814203	3814203	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgatataactgccactcCgcattcttcggcatggaatt	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3814203	A	A	3814203	3	1	9	1	0	0	0	0	1	0	0	0	4599	652	23	1	1941	1	DLGAP1	18	3814203	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	280004	3814203	74263045	16335	24486											
ZFP161	7541	broad.mit.edu	37	chr18	5291659	5291659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgccgtcctcctgactcGggggtgtgccttctactgtg	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5291659	T	T	5291659	3	4	9	1	0	0	0	0	1	0	0	0	17766	1116	39	1	805	1	ZFP161	18	5291659	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1477456	5291659	72785589	16336	24487											
EPB41L3	23136	broad.mit.edu	37	chr18	5394800	5394800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagccagcgcctatcccCgggaaatcacagaagggcag	12	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5394800	A	A	5394800	1	1	9	0	1	0	0	0	0	0	0	0	5196	667	23	1		1	EPB41L3	18	5394800	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103141	5394800	72682448	16337	24488											
EPB41L3	23136	broad.mit.edu	37	chr18	5395093	5395093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaatgtctgcatccccCgtgatgactattcgcttctc	8	13	3	2	rs144676596		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5395093	A	A	5395093	2	1	9	1	0	0	0	0	0	0	0	1	5196	639	23	1		1	EPB41L3	18	5395093	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	293	5395093	72682155	16338	24489											
EPB41L3	23136	broad.mit.edu	37	chr18	5397408	5397408	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctattccactggactcCgtcttggtttccattttctg	7	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5397408	A	A	5397408	2	1	9	1	0	0	0	0	0	0	0	1	5196	639	23	1		1	EPB41L3	18	5397408	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2315	5397408	72679840	16339	24490											
EPB41L3	23136	broad.mit.edu	37	chr18	5428346	5428346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaatgtaaaagttgttcCgtttgtatgaaatctttaga	7	4	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5428346	A	A	5428346	3	1	9	1	0	0	0	0	1	0	0	0	5196	652	23	1	2288	1	EPB41L3	18	5428346	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	30938	5428346	72648902	16340	24491											
EPB41L3	23136	broad.mit.edu	37	chr18	5445297	5445297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacacaaagaaagttctccCaaatatcagagataaaacca	4	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5445297	A	A	5445297	1	1	9	0	1	0	0	0	0	0	0	0	5196	609	21	2		2	EPB41L3	18	5445297	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16951	5445297	72631951	16341	24492											
L3MBTL4	91133	broad.mit.edu	37	chr18	6093513	6093513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagttcatgtctgaatacGggcagccaaaagcactggtt	10	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6093513	T	T	6093513	3	4	9	1	0	0	0	0	1	0	0	0	8666	1116	39	1	681	1	L3MBTL4	18	6093513	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	648216	6093513	71983735	16342	24493											
L3MBTL4	91133	broad.mit.edu	37	chr18	6241339	6241339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaatttgatttatgctGggaaagaaaatacttacagg	12	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6241339	T	T	6241339	1	4	9	0	1	0	0	0	0	0	0	0	8666	1363	47	2		2	L3MBTL4	18	6241339	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	147826	6241339	71835909	16343	24494											
L3MBTL4	91133	broad.mit.edu	37	chr18	6241424	6241424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccttcaagtaatccatcCaaacaaatttatcttttcta	3	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6241424	A	A	6241424	3	1	9	1	0	0	0	0	1	0	0	0	8666	595	21	2	1438	2	L3MBTL4	18	6241424	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85	6241424	71835824	16344	24495											
L3MBTL4	91133	broad.mit.edu	37	chr18	6301902	6301902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatattggtgataattacCgtgactcaaaggggttgtgc	11	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6301902	A	A	6301902	3	1	9	1	0	0	0	0	1	0	0	0	8666	666	23	1	1812	1	L3MBTL4	18	6301902	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60478	6301902	71775346	16345	24496											
L3MBTL4	91133	broad.mit.edu	37	chr18	6311632	6311632	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctgtttcattgccaccCccgcactccttggcagtggt	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6311632	A	A	6311632	1	1	9	0	1	0	0	0	0	0	0	0	8666	638	22	2		2	L3MBTL4	18	6311632	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	9730	6311632	71765616	16346	24497											
ARHGAP28	79822	broad.mit.edu	37	chr18	6851027	6851027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtggctttcatttcttcCgttagcctcgtgatacctgt	8	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6851027	A	A	6851027	1	1	9	0	1	0	0	0	0	0	0	0	879	667	23	1		1	ARHGAP28	18	6851027	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	539395	6851027	71226221	16347	24498											
ARHGAP28	79822	broad.mit.edu	37	chr18	6882185	6882185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgctgataaatttaaatGggacaaaatgtgccatagag	9	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6882185	T	T	6882185	3	4	9	1	0	0	0	0	1	0	0	0	879	1357	47	2	897	2	ARHGAP28	18	6882185	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31158	6882185	71195063	16348	24499											
ARHGAP28	79822	broad.mit.edu	37	chr18	6890049	6890049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgcggcccacatcatcCgcctaatgcttaagtaccag	7	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6890049	A	A	6890049	3	1	9	1	0	0	0	0	1	0	0	0	879	652	23	1	1264	1	ARHGAP28	18	6890049	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7864	6890049	71187199	16349	24500											
LAMA1	284217	broad.mit.edu	37	chr18	6943263	6943263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcgccaactgcgttccCgtcaacaatcagagtgatac	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6943263	A	A	6943263	3	1	9	1	0	0	0	0	1	0	0	0	8677	652	23	1	252	1	LAMA1	18	6943263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53214	6943263	71133985	16350	24501											
LAMA1	284217	broad.mit.edu	37	chr18	6964738	6964738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggtcagaagatgctccCggagtctcgccctgcttggt	13	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6964738	A	A	6964738	2	1	9	1	0	0	0	0	0	0	0	1	8677	639	23	1		1	LAMA1	18	6964738	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	21475	6964738	71112510	16351	24502											
LAMA1	284217	broad.mit.edu	37	chr18	7002394	7002394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccacagttctgggagccCacatttaaaggaagggggaa	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7002394	A	A	7002394	1	1	9	0	1	0	0	0	0	0	0	0	8677	609	21	2		2	LAMA1	18	7002394	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	37656	7002394	71074854	16352	24503											
PTPRM	5797	broad.mit.edu	37	chr18	7888038	7888038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacccatgtaaatggtggtGggttttcagagataaccaga	11	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7888038	T	T	7888038	1	4	9	0	1	0	0	0	0	0	0	0	12914	1363	47	2		2	PTPRM	18	7888038	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	885644	7888038	70189210	16353	24504											
PTPRM	5797	broad.mit.edu	37	chr18	7949192	7949192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatacagggcattgatgtgcGagatgctcctctgaaggaaa	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7949192	T	T	7949192	3	4	9	1	0	0	0	0	1	0	0	0	12914	1058	37	3	699	3	PTPRM	18	7949192	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	61154	7949192	70128056	16354	24505											
PTPRM	5797	broad.mit.edu	37	chr18	8248136	8248136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcattgacctgcttacGgtgtatgacagacccatttg	9	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8248136	T	T	8248136	1	4	9	0	1	0	0	0	0	0	0	0	12914	1131	39	1		1	PTPRM	18	8248136	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	298944	8248136	69829112	16355	24506											
PTPRM	5797	broad.mit.edu	37	chr18	8248189	8248189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaggtgagaacatttccCtttaccacagtttattgcag	7	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8248189	A	A	8248189	1	1	9	0	1	0	0	0	0	0	0	0	12914	696	24	2		2	PTPRM	18	8248189	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	8248189	69829059	16356	24507											
RAB12	201475	broad.mit.edu	37	chr18	8625003	8625003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattacagatctggtaagtGggagagtgtgcacccagtaa	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8625003	T	T	8625003	1	4	9	0	1	0	0	0	0	0	0	0	13006	1363	47	2		2	RAB12	18	8625003	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	376814	8625003	69452245	16357	24508											
KIAA0802	23255	broad.mit.edu	37	chr18	8793113	8793113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatttacaaacaagatcCataaggtaaatatttaacac	4	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8793113	A	A	8793113	3	1	9	1	0	0	0	0	1	0	0	0	8264	594	21	2	2027	2	KIAA0802	18	8793113	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	168110	8793113	69284135	16358	24509											
KIAA0802	23255	broad.mit.edu	37	chr18	8818982	8818982	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaaagagaacagtcccCggagaggtggcagtttcctc	13	10	0	3	rs149462341		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8818982	A	A	8818982	2	1	9	1	0	0	0	0	0	0	0	1	8264	643	23	1		1	KIAA0802	18	8818982	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25869	8818982	69258266	16359	24510											
PPP4R1	9989	broad.mit.edu	37	chr18	9593858	9593858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggtatcgagcaaactcCgggccaccatttgtctacac	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9593858	A	A	9593858	3	1	9	1	0	0	0	0	1	0	0	0	12504	652	23	1	2717	1	PPP4R1	18	9593858	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	774876	9593858	68483390	16360	24511											
FAM38B	63895	broad.mit.edu	37	chr18	10681658	10681658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactatagggatttacttacGgtgtccctagaaaaagcttg	9	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10681658	T	T	10681658	2	4	9	1	0	0	0	0	0	0	0	1	5606	1130	39	1		1	FAM38B	18	10681658	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1087800	10681658	67395590	16361	24512											
GNAL	2774	broad.mit.edu	37	chr18	11868385	11868385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgttactgaagcaaccaGtggtgcgcggcgcacctgca	14	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11868385	T	T	11868385	1	4	9	0	1	0	0	0	0	0	0	0	6571	1044	36	3		3	GNAL	18	11868385	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1186727	11868385	66208863	16362	24513											
GNAL	2774	broad.mit.edu	37	chr18	11876645	11876645	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgcaggagaagatccCaaagttacaagagccaagtt	10	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11876645	A	A	11876645	2	1	9	1	0	0	0	0	0	0	0	1	6571	581	21	2		2	GNAL	18	11876645	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8260	11876645	66200603	16363	24514											
IMPA2	3613	broad.mit.edu	37	chr18	12009938	12009938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtgctcacccacagccCgacgtggatcatcgacccca	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12009938	A	A	12009938	3	1	9	1	0	0	0	0	1	0	0	0	7793	652	23	1	297	1	IMPA2	18	12009938	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	133293	12009938	66067310	16364	24515											
CIDEA	1149	broad.mit.edu	37	chr18	12274142	12274142	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgaagaggtcgggaatagcGagagtcaccttcgacttgta	13	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12274142	T	T	12274142	2	4	9	1	0	0	0	0	0	0	0	1	3456	1045	37	3		3	CIDEA	18	12274142	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	264204	12274142	65803106	16365	24516											
TUBB6	84617	broad.mit.edu	37	chr18	12325073	12325073	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttgttgcaggccagacGggtgcagggaacaactgggc	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12325073	T	T	12325073	2	4	9	1	0	0	0	0	0	0	0	1	16886	1103	39	1		1	TUBB6	18	12325073	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50931	12325073	65752175	16366	24517											
AFG3L2	10939	broad.mit.edu	37	chr18	12363818	12363818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctggtgtaaaggtcactCgaacaaaacgcttgttgacg	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12363818	A	A	12363818	3	1	9	1	0	0	0	0	1	0	0	0	360	884	31	3	1851	3	AFG3L2	18	12363818	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38745	12363818	65713430	16367	24518											
SLMO1	10650	broad.mit.edu	37	chr18	12421655	12421655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcctcagatgagaaacGggctcagtgtgtctgggtgg	16	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12421655	T	T	12421655	1	4	9	0	1	0	0	0	0	0	0	0	14864	1131	39	1		1	SLMO1	18	12421655	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57837	12421655	65655593	16368	24519											
SPIRE1	56907	broad.mit.edu	37	chr18	12506508	12506508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaggtgtatcttttgcagcGaatgtcatccattaacatct	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12506508	T	T	12506508	3	4	9	1	0	0	0	0	1	0	0	0	15189	1058	37	3	1378	3	SPIRE1	18	12506508	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84853	12506508	65570740	16369	24520											
SPIRE1	56907	broad.mit.edu	37	chr18	12506573	12506573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaaagggttgtactgcCgctcttggaccttcttaagt	12	9	2	0	rs140647765		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12506573	A	A	12506573	3	1	9	1	0	0	0	0	1	0	0	0	15189	652	23	1	1443	1	SPIRE1	18	12506573	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	12506573	65570675	16370	24521											
SPIRE1	56907	broad.mit.edu	37	chr18	12535382	12535382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttttaaaacaatacagcGgacaatattgaaaatttagg	6	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12535382	T	T	12535382	1	4	9	0	1	0	0	0	0	0	0	0	15189	1131	39	1		1	SPIRE1	18	12535382	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28809	12535382	65541866	16371	24522											
CEP192	55125	broad.mit.edu	37	chr18	13056638	13056638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaaccttttcctgtgcCgtctgttggtacaaactgtg	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13056638	A	A	13056638	3	1	9	1	0	0	0	0	1	0	0	0	3281	652	23	1	4119	1	CEP192	18	13056638	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	521256	13056638	65020610	16372	24523											
CEP192	55125	broad.mit.edu	37	chr18	13068180	13068180	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgcgctgatgtggtcactCggctagcaggcccttctgtg	13	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13068180	A	A	13068180	2	1	9	1	0	0	0	0	0	0	0	1	3281	875	31	3		3	CEP192	18	13068180	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11542	13068180	65009068	16373	24524											
CEP192	55125	broad.mit.edu	37	chr18	13068921	13068921	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcccaaaccctacgccCgttcttagaagtgtgagtct	9	13	2	2	rs143041966	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13068921	A	A	13068921	2	1	9	1	0	0	0	0	0	0	0	1	3281	639	23	1		1	CEP192	18	13068921	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	741	13068921	65008327	16374	24525											
CEP192	55125	broad.mit.edu	37	chr18	13114128	13114128	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctgtgatttttctgtataGagcatcgaagcagaaaatga	9	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13114128	T	T	13114128	5	4	9	1	0	0	0	0	0	0	1	0	3281	956	33	3	7329	3	CEP192	18	13114128	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	45207	13114128	64963120	16375	24526											
MC5R	4161	broad.mit.edu	37	chr18	13826264	13826264	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccatcatcgccggcatctGggctttctgcacgggctgcg	14	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13826264	C	C	13826264	3	2	9	1	0	0	0	0	1	0	0	0	9460	1357	47	4	502	4	MC5R	18	13826264	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	712136	13826264	64250984	16376	24527											
MC5R	4161	broad.mit.edu	37	chr18	13826402	13826402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacatgttcctcctggcgcGgactcacgtcaagcggatcg	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13826402	T	T	13826402	3	4	9	1	0	0	0	0	1	0	0	0	9460	1116	39	1	640	1	MC5R	18	13826402	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	138	13826402	64250846	16377	24528											
MC5R	4161	broad.mit.edu	37	chr18	13826433	13826433	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcggatcgcggctctgccCggggccagctctgcgcggca	16	15	2	0	rs142471410		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13826433	G	G	13826433	2	3	9	1	0	0	0	0	0	0	0	1	9460	639	23	4		4	MC5R	18	13826433	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	31	13826433	64250815	16378	24529											
POTEC	388468	broad.mit.edu	37	chr18	14522192	14522192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcatcatgaatattagccCaaattaggattagtttgaca	7	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14522192	A	A	14522192	1	1	9	0	1	0	0	0	0	0	0	0	12358	609	21	2		2	POTEC	18	14522192	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	695759	14522192	63555056	16379	24530											
POTEC	388468	broad.mit.edu	37	chr18	14543017	14543017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtggtctccagaagtgccCatgttgctcttgccgctccc	10	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14543017	A	A	14543017	3	1	9	1	0	0	0	0	1	0	0	0	12358	594	21	2	1543	2	POTEC	18	14543017	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20825	14543017	63534231	16380	24531											
ANKRD30B	374860	broad.mit.edu	37	chr18	14850279	14850279	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaagaaaaaattagaccCgaagagcaacttaggaaaaa	7	5	0	3	rs71350559		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14850279	A	A	14850279	2	1	9	1	0	0	0	0	0	0	0	1	659	639	23	1		1	ANKRD30B	18	14850279	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	307262	14850279	63226969	16381	24532											
ROCK1	6093	broad.mit.edu	37	chr18	18571232	18571232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttacctcttgttctaacCgttgttgtaatgatttaagt	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18571232	A	A	18571232	3	1	9	1	0	0	0	0	1	0	0	0	13628	652	23	1	2080	1	ROCK1	18	18571232	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3720953	18571232	59506016	16382	24533											
ROCK1	6093	broad.mit.edu	37	chr18	18608887	18608887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttaaatcgggtacaactGgtgctacagctaaagacaaa	8	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18608887	T	T	18608887	3	4	9	1	0	0	0	0	1	0	0	0	13628	1348	47	2	3099	2	ROCK1	18	18608887	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37655	18608887	59468361	16383	24534											
ROCK1	6093	broad.mit.edu	37	chr18	18619439	18619439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaacttactgtctcGgagcgtttcccaagcccact	6	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18619439	T	T	18619439	2	4	9	1	0	0	0	0	0	0	0	1	13628	1124	39	1		1	ROCK1	18	18619439	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10552	18619439	59457809	16384	24535											
ESCO1	114799	broad.mit.edu	37	chr18	19153705	19153705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctttgtttttctacttGggaaaaaacgattacattgc	8	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19153705	T	T	19153705	3	4	9	1	0	0	0	0	1	0	0	0	5290	1348	47	2	1458	2	ESCO1	18	19153705	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	534266	19153705	58923543	16385	24536											
ESCO1	114799	broad.mit.edu	37	chr18	19154035	19154035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatctcattctttttcGggaccactgaagtagccatt	6	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19154035	T	T	19154035	3	4	9	1	0	0	0	0	1	0	0	0	5290	1116	39	1	1788	1	ESCO1	18	19154035	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	330	19154035	58923213	16386	24537											
ESCO1	114799	broad.mit.edu	37	chr18	19154379	19154379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaactgcttgaacttgaccCtgaatttctctactgcgtaa	6	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19154379	A	A	19154379	3	1	9	1	0	0	0	0	1	0	0	0	5290	680	24	2	2132	2	ESCO1	18	19154379	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	344	19154379	58922869	16387	24538											
ESCO1	114799	broad.mit.edu	37	chr18	19154470	19154470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagctgttcatttgctttaGggttttcatgtactaatttt	7	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19154470	T	T	19154470	3	4	9	1	0	0	0	0	1	0	0	0	5290	1000	35	2	2223	2	ESCO1	18	19154470	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91	19154470	58922778	16388	24539											
MIB1	57534	broad.mit.edu	37	chr18	19418417	19418417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttacatctggctgccCttaataatcacgtagaagtg	8	11	2	1	rs34410937		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19418417	A	A	19418417	3	1	9	1	0	0	0	0	1	0	0	0	9659	681	24	2	1971	2	MIB1	18	19418417	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	263947	19418417	58658831	16389	24540											
MIB1	57534	broad.mit.edu	37	chr18	19429174	19429174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtggtcaagtgggttctcGgagtccttctatgattagta	12	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19429174	T	T	19429174	3	4	9	1	0	0	0	0	1	0	0	0	9659	1116	39	1	2477	1	MIB1	18	19429174	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	10757	19429174	58648074	16390	24541											
MIB1	57534	broad.mit.edu	37	chr18	19438512	19438512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatctatattatagcaagtGggaatattccagtattacaa	6	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19438512	T	T	19438512	3	4	9	1	0	0	0	0	1	0	0	0	9659	1348	47	2	2863	2	MIB1	18	19438512	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9338	19438512	58638736	16391	24542											
GATA6	2627	broad.mit.edu	37	chr18	19761500	19761500	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacgccgagggtgaaccCgtgtgcaatgcttgtggact	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19761500	A	A	19761500	2	1	9	1	0	0	0	0	0	0	0	1	6320	639	23	1		1	GATA6	18	19761500	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	322988	19761500	58315748	16392	24543											
GATA6	2627	broad.mit.edu	37	chr18	19780621	19780621	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccccctcttctgccaggcGggtgccccggtgatgactgg	14	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19780621	T	T	19780621	2	4	9	1	0	0	0	0	0	0	0	1	6320	1103	39	1		1	GATA6	18	19780621	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	19121	19780621	58296627	16393	24544											
GATA6	2627	broad.mit.edu	37	chr18	19780645	19780645	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccggtgatgactggtgcGggagagagcaccaatcccga	15	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19780645	T	T	19780645	2	4	9	1	0	0	0	0	0	0	0	1	6320	1103	39	1		1	GATA6	18	19780645	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	19780645	58296603	16394	24545											
CTAGE1	64693	broad.mit.edu	37	chr18	19995825	19995825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttgcttcattttcagcGgggagagatgaatcaggcac	12	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19995825	T	T	19995825	2	4	9	1	0	0	0	0	0	0	0	1	4026	1103	39	1		1	CTAGE1	18	19995825	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	215180	19995825	58081423	16395	24546											
CTAGE1	64693	broad.mit.edu	37	chr18	19996571	19996571	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatctttggctcgctttcGgtaggtctccagctcttcag	10	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19996571	T	T	19996571	2	4	9	1	0	0	0	0	0	0	0	1	4026	1124	39	1		1	CTAGE1	18	19996571	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	746	19996571	58080677	16396	24547											
CTAGE1	64693	broad.mit.edu	37	chr18	19997364	19997364	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatccttttggaaatatcCgccatcaattcattttgttc	5	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19997364	A	A	19997364	2	1	9	1	0	0	0	0	0	0	0	1	4026	639	23	1		1	CTAGE1	18	19997364	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	793	19997364	58079884	16397	24548											
RBBP8	5932	broad.mit.edu	37	chr18	20581641	20581641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttggcagacagtttctccCaagcagcagatgaagaggag	13	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20581641	A	A	20581641	3	1	9	1	0	0	0	0	1	0	0	0	13213	595	21	2	2290	2	RBBP8	18	20581641	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	584277	20581641	57495607	16398	24549											
RBBP8	5932	broad.mit.edu	37	chr18	20602158	20602158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcaagacaccgattcCgctacattccacccaacaca	4	18	1	1	rs147143633		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20602158	A	A	20602158	3	1	9	1	0	0	0	0	1	0	0	0	13213	652	23	1	2587	1	RBBP8	18	20602158	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20517	20602158	57475090	16399	24550											
CABLES1	91768	broad.mit.edu	37	chr18	20817116	20817116	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcttcaggtagtgacctGggagactttatggactatga	12	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20817116	T	T	20817116	2	4	9	1	0	0	0	0	0	0	0	1	2555	1335	47	2		2	CABLES1	18	20817116	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	214958	20817116	57260132	16400	24551											
C18orf45	85019	broad.mit.edu	37	chr18	20889649	20889649	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaaaagacttaccatccCgtggttgcactggtcaggat	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20889649	A	A	20889649	2	1	9	1	0	0	0	0	0	0	0	1	1921	639	23	1		1	C18orf45	18	20889649	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	72533	20889649	57187599	16401	24552											
C18orf8	29919	broad.mit.edu	37	chr18	21086937	21086937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctttcttcttaaagaatGgatgacaaaggagaagtgaa	9	4	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21086937	T	T	21086937	3	4	9	1	0	0	0	0	1	0	0	0	1926	1348	47	2	193	2	C18orf8	18	21086937	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	197288	21086937	56990311	16402	24553											
C18orf8	29919	broad.mit.edu	37	chr18	21106681	21106681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagactcatggactttctcCtccagagaaaggaatgcaag	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21106681	A	A	21106681	3	1	9	1	0	0	0	0	1	0	0	0	1926	681	24	2	1191	2	C18orf8	18	21106681	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19744	21106681	56970567	16403	24554											
NPC1	4864	broad.mit.edu	37	chr18	21118507	21118507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatggcagcagcacttaccCtttgccacacttggggttag	10	12	0	0	rs34453602		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21118507	A	A	21118507	3	1	9	1	0	0	0	0	1	0	0	0	10665	695	24	2	820	2	NPC1	18	21118507	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11826	21118507	56958741	16404	24555											
NPC1	4864	broad.mit.edu	37	chr18	21121205	21121205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaacaaaggttataccCgctagctgcttcctctagat	9	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21121205	A	A	21121205	1	1	9	0	1	0	0	0	0	0	0	0	10665	667	23	1		1	NPC1	18	21121205	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2698	21121205	56956043	16405	24556											
NPC1	4864	broad.mit.edu	37	chr18	21124422	21124422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgtagctgaagacaccCaaggagcaagccaccgagct	10	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21124422	A	A	21124422	3	1	9	1	0	0	0	0	1	0	0	0	10665	593	21	2	1872	2	NPC1	18	21124422	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3217	21124422	56952826	16406	24557											
NPC1	4864	broad.mit.edu	37	chr18	21136258	21136258	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagggtacatcagctccCgaagggtatggctggtaaat	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21136258	A	A	21136258	2	1	9	1	0	0	0	0	0	0	0	1	10665	639	23	1		1	NPC1	18	21136258	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11836	21136258	56940990	16407	24558											
NPC1	4864	broad.mit.edu	37	chr18	21153490	21153490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaattgtacctcttgtcccCatatgcaattccacactctc	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21153490	A	A	21153490	3	1	9	1	0	0	0	0	1	0	0	0	10665	594	21	2	3826	2	NPC1	18	21153490	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17232	21153490	56923758	16408	24559											
LAMA3	3909	broad.mit.edu	37	chr18	21328024	21328024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccatggcaatattttgctCgtaagtaatcttgcctacca	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21328024	A	A	21328024	3	1	9	1	0	0	0	0	1	0	0	0	8679	898	31	3	575	3	LAMA3	18	21328024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	174534	21328024	56749224	16409	24560											
LAMA3	3909	broad.mit.edu	37	chr18	21364041	21364041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatgtgatgcccacggacGgtgcctgtgccgccctgggg	15	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21364041	T	T	21364041	3	4	9	1	0	0	0	0	1	0	0	0	8679	1116	39	1	1569	1	LAMA3	18	21364041	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36017	21364041	56713207	16410	24561											
LAMA3	3909	broad.mit.edu	37	chr18	21413849	21413849	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccactacgtggttgtggtcGagtattccacggaggcagct	14	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21413849	T	T	21413849	4	4	9	1	0	0	0	0	0	1	0	0	8679	1059	37	3	2975	3	LAMA3	18	21413849	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49808	21413849	56663399	16411	24562											
LAMA3	3909	broad.mit.edu	37	chr18	21413906	21413906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaatgtgaagagctccGggtctgttctggcaggccag	15	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21413906	T	T	21413906	3	4	9	1	0	0	0	0	1	0	0	0	8679	1116	39	1	3032	1	LAMA3	18	21413906	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	57	21413906	56663342	16412	24563											
LAMA3	3909	broad.mit.edu	37	chr18	21413964	21413964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactacaggtactcagcccCaccaagggaattcctctgta	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21413964	A	A	21413964	1	1	9	0	1	0	0	0	0	0	0	0	8679	609	21	2		2	LAMA3	18	21413964	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	21413964	56663284	16413	24564											
LAMA3	3909	broad.mit.edu	37	chr18	21422394	21422394	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggacgtgtaccacacctGggccgatacgtctttgtcat	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21422394	T	T	21422394	2	4	9	1	0	0	0	0	0	0	0	1	8679	1335	47	2		2	LAMA3	18	21422394	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8430	21422394	56654854	16414	24565											
LAMA3	3909	broad.mit.edu	37	chr18	21422438	21422438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaccaagcagcgcaccCgacgtttcccgcgcaggtgt	10	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21422438	A	A	21422438	3	1	9	1	0	0	0	0	1	0	0	0	8679	652	23	1	3526	1	LAMA3	18	21422438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	21422438	56654810	16415	24566											
LAMA3	3909	broad.mit.edu	37	chr18	21444686	21444686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctaagtgcttttcatgcGggttgatgttgacatcatct	10	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21444686	T	T	21444686	1	4	9	0	1	0	0	0	0	0	0	0	8679	1131	39	1		1	LAMA3	18	21444686	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	22248	21444686	56632562	16416	24567											
LAMA3	3909	broad.mit.edu	37	chr18	21456280	21456280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagccctggatactatcGggatcataaaggcttgtata	10	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21456280	T	T	21456280	3	4	9	1	0	0	0	0	1	0	0	0	8679	1116	39	1	5350	1	LAMA3	18	21456280	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11594	21456280	56620968	16417	24568											
LAMA3	3909	broad.mit.edu	37	chr18	21469942	21469942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agataaacgatgagttatttGggtgtttctcctcctctcta	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21469942	T	T	21469942	1	4	9	0	1	0	0	0	0	0	0	0	8679	1363	47	2		2	LAMA3	18	21469942	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13662	21469942	56607306	16418	24569											
LAMA3	3909	broad.mit.edu	37	chr18	21470012	21470012	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggaatccccagaaattcGgaggtagctgccaaccatgc	11	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21470012	T	T	21470012	4	4	9	1	0	0	0	0	0	1	0	0	8679	1117	39	1	5682	1	LAMA3	18	21470012	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	21470012	56607236	16419	24570											
LAMA3	3909	broad.mit.edu	37	chr18	21489222	21489222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacaacatggacagaatacGagaactaattcagcaggcca	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21489222	T	T	21489222	3	4	9	1	0	0	0	0	1	0	0	0	8679	1058	37	3	7514	3	LAMA3	18	21489222	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19210	21489222	56588026	16420	24571											
LAMA3	3909	broad.mit.edu	37	chr18	21496554	21496554	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaattattttgaaggtacGggctatgctcgagttccaac	9	7	0	1	rs139567388	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21496554	T	T	21496554	2	4	9	1	0	0	0	0	0	0	0	1	8679	1103	39	1		1	LAMA3	18	21496554	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7332	21496554	56580694	16421	24572											
LAMA3	3909	broad.mit.edu	37	chr18	21496595	21496595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccacatgctcccatccCaacctttggacagacaattc	4	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21496595	A	A	21496595	3	1	9	1	0	0	0	0	1	0	0	0	8679	594	21	2	8272	2	LAMA3	18	21496595	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	21496595	56580653	16422	24573											
LAMA3	3909	broad.mit.edu	37	chr18	21511093	21511093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagcgatagcggcagccCaatttttaaatctccacaga	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21511093	A	A	21511093	3	1	9	1	0	0	0	0	1	0	0	0	8679	594	21	2	8937	2	LAMA3	18	21511093	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14498	21511093	56566155	16423	24574											
LAMA3	3909	broad.mit.edu	37	chr18	21534577	21534577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagccttggaagtccagGggcctgtcagtctgaatggt	14	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21534577	T	T	21534577	3	4	9	1	0	0	0	0	1	0	0	0	8679	1232	43	2	10440	2	LAMA3	18	21534577	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23484	21534577	56542671	16424	24575											
TTC39C	125488	broad.mit.edu	37	chr18	21662912	21662912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcatactgtagtccgccCgttttttgccttggatggca	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21662912	A	A	21662912	3	1	9	1	0	0	0	0	1	0	0	0	16835	652	23	1	873	1	TTC39C	18	21662912	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	128335	21662912	56414336	16425	24576											
TTC39C	125488	broad.mit.edu	37	chr18	21710287	21710287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctttcagtacttccagcGagctgttaaagatgaattgt	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21710287	T	T	21710287	3	4	9	1	0	0	0	0	1	0	0	0	16835	1058	37	3	1575	3	TTC39C	18	21710287	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47375	21710287	56366961	16426	24577											
CABYR	26256	broad.mit.edu	37	chr18	21739956	21739956	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgacaaatgtgctccCtttggaagttacggtattgc	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21739956	A	A	21739956	1	1	9	0	1	0	0	0	0	0	0	0	2562	668	24	2		2	CABYR	18	21739956	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	29669	21739956	56337292	16427	24578											
CABYR	26256	broad.mit.edu	37	chr18	21739969	21739969	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctccctttggaagttacGgtattgctggggaggtaacc	14	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21739969	T	T	21739969	1	4	9	0	1	0	0	0	0	0	0	0	2562	1116	39	1		1	CABYR	18	21739969	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	21739969	56337279	16428	24579											
CABYR	26256	broad.mit.edu	37	chr18	21739989	21739989	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtattgctggggaggtaacCgtgactactgctcacaaacg	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21739989	A	A	21739989	1	1	9	0	1	0	0	0	0	0	0	0	2562	639	23	1		1	CABYR	18	21739989	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	21739989	56337259	16429	24580											
CABYR	26256	broad.mit.edu	37	chr18	21741483	21741483	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcattattcctaacagatcCagaaatgacgctgtctgggt	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21741483	A	A	21741483	1	1	9	0	1	0	0	0	0	0	0	0	2562	609	21	2		2	CABYR	18	21741483	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1494	21741483	56335765	16430	24581											
OSBPL1A	114876	broad.mit.edu	37	chr18	21751457	21751457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcaacacacatttgtccCcagtcctataaagaaaatac	3	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21751457	A	A	21751457	3	1	9	1	0	0	0	0	1	0	0	0	11371	623	22	2	669	2	OSBPL1A	18	21751457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9974	21751457	56325791	16431	24582											
OSBPL1A	114876	broad.mit.edu	37	chr18	21912974	21912974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcacattgtttatgggccCggtaagctgcacaatgcaag	12	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21912974	A	A	21912974	3	1	9	1	0	0	0	0	1	0	0	0	11371	652	23	1	2383	1	OSBPL1A	18	21912974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	161517	21912974	56164274	16432	24583											
OSBPL1A	114876	broad.mit.edu	37	chr18	21913015	21913015	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtatttcctaactgatcCgaacagttaacatcaggagg	10	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21913015	A	A	21913015	2	1	9	1	0	0	0	0	0	0	0	1	11371	639	23	1		1	OSBPL1A	18	21913015	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	21913015	56164233	16433	24584											
OSBPL1A	114876	broad.mit.edu	37	chr18	21946957	21946957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatgaccactttaaatacCaagaaatatacaatggtgaa	5	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21946957	A	A	21946957	1	1	9	0	1	0	0	0	0	0	0	0	11371	609	21	2		2	OSBPL1A	18	21946957	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	33942	21946957	56130291	16434	24585											
HRH4	59340	broad.mit.edu	37	chr18	22048811	22048811	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgaatgggattttggaaagGaaatctgtgtattttggctc	12	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22048811	T	T	22048811	4	4	9	1	0	0	0	0	0	1	0	0	7425	1175	41	3	259	3	HRH4	18	22048811	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101854	22048811	56028437	16435	24586											
ZNF521	25925	broad.mit.edu	37	chr18	22642690	22642690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcactaactgctgtgttGggtcattgtatgattctgta	10	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22642690	T	T	22642690	3	4	9	1	0	0	0	0	1	0	0	0	18092	1357	47	2	17	2	ZNF521	18	22642690	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	593879	22642690	55434558	16436	24587											
ZNF521	25925	broad.mit.edu	37	chr18	22804315	22804315	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggcgagttacctcatcCgactgggagggactgattct	12	9	2	1	rs151163286		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804315	A	A	22804315	2	1	9	1	0	0	0	0	0	0	0	1	18092	639	23	1		1	ZNF521	18	22804315	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	161625	22804315	55272933	16437	24588			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22804395	22804395	+	Nonsense_Mutation	SNP	C	A	A													gttgctgtctggcacgagctCtcggtggatggtttggatgt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804395	A	A	22804395	4	1	9	1	0	0	0	0	0	1	0	0	18092	922	32	3	468	3	ZNF521	18	22804395	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	22804395	55272853	16438	24589	162	2	19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22804397	22804397	+	Missense_Mutation	SNP	C	A	A													tgctgtctggcacgagctctCggtggatggtttggatgtgg					rs146072050	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804397	A	A	22804397	3	1	9	1	0	0	0	0	1	0	0	0	18092	884	31	3	470	3	ZNF521	18	22804397	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2	22804397	55272851	16439	24590	162	2	19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22804549	22804549	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcctggtctattcgtgccGggagggacgttaatgcctgg	15	9	1	0	rs34380309	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22804549	T	T	22804549	2	4	9	1	0	0	0	0	0	0	0	1	18092	1103	39	1		1	ZNF521	18	22804549	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152	22804549	55272699	16440	24591			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22804568	22804568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggagggacgttaatgcctGggctggcgctcttactgaga	16	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22804568	T	T	22804568	3	4	9	1	0	0	0	0	1	0	0	0	18092	1348	47	2	641	2	ZNF521	18	22804568	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19	22804568	55272680	16441	24592			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22804767	22804767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttgcatgtggaacgtccCatggattttgagttccaagg	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804767	A	A	22804767	3	1	9	1	0	0	0	0	1	0	0	0	18092	594	21	2	840	2	ZNF521	18	22804767	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	199	22804767	55272481	16442	24593			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22804989	22804989	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggagggaaaccgctctcCgcaaatagggcacatgtagt	13	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804989	A	A	22804989	4	1	9	1	0	0	0	0	0	1	0	0	18092	661	23	1	1062	1	ZNF521	18	22804989	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	222	22804989	55272259	16443	24594			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805045	22805045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggtctgcatatgttccCggaggccattttcggagaag	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805045	A	A	22805045	3	1	9	1	0	0	0	0	1	0	0	0	18092	652	23	1	1118	1	ZNF521	18	22805045	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	56	22805045	55272203	16444	24595			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805059	22805059	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcccggaggccattttcGgagaagaaggttcgagagca	14	8	0	3	rs115526711	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805059	T	T	22805059	2	4	9	1	0	0	0	0	0	0	0	1	18092	1103	39	1		1	ZNF521	18	22805059	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14	22805059	55272189	16445	24596			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805141	22805141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttcacgatggcactttctCcaggtctgatgttgtggtct	10	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805141	A	A	22805141	3	1	9	1	0	0	0	0	1	0	0	0	18092	855	30	3	1214	3	ZNF521	18	22805141	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	22805141	55272107	16446	24597			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805338	22805338	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttctgcacttgctcGgaagctccatttgttccaca	6	14	2	0	rs115420852	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805338	T	T	22805338	2	4	9	1	0	0	0	0	0	0	0	1	18092	1103	39	1		1	ZNF521	18	22805338	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	197	22805338	55271910	16447	24598			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805396	22805396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaatacacagtgtttttctCgcaagtgtttttctaacaaa	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805396	A	A	22805396	3	1	9	1	0	0	0	0	1	0	0	0	18092	884	31	3	1469	3	ZNF521	18	22805396	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58	22805396	55271852	16448	24599			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805422	22805422	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtttttctaacaaaatgatCgcatggaaggctttgctaca	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805422	A	A	22805422	2	1	9	1	0	0	0	0	0	0	0	1	18092	871	31	3		3	ZNF521	18	22805422	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	22805422	55271826	16449	24600			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805499	22805499	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggcattgcagctccacctCggtgccaaaggactcaccgc	11	15	1	0	rs140956783		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805499	A	A	22805499	4	1	9	1	0	0	0	0	0	1	0	0	18092	893	31	3	1572	3	ZNF521	18	22805499	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	77	22805499	55271749	16450	24601			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805547	22805547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacttatgcactttcccttGgttttccaggtggttgtgtt	10	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805547	T	T	22805547	3	4	9	1	0	0	0	0	1	0	0	0	18092	1357	47	2	1620	2	ZNF521	18	22805547	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	48	22805547	55271701	16451	24602			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805764	22805764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtttctgaaggtcatcCactgatgtgaattgcttgtc	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805764	A	A	22805764	2	1	9	1	0	0	0	0	0	0	0	1	18092	581	21	2		2	ZNF521	18	22805764	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	217	22805764	55271484	16452	24603			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805793	22805793	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaattgcttgtcacaactctCacagatgtaatacgttgaag	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805793	A	A	22805793	4	1	9	1	0	0	0	0	0	1	0	0	18092	835	29	3	1866	3	ZNF521	18	22805793	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	22805793	55271455	16453	24604			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805830	22805830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgatcataaagtgaatGgtaacatgcttcagcaagga	11	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805830	T	T	22805830	2	4	9	1	0	0	0	0	0	0	0	1	18092	1335	47	2		2	ZNF521	18	22805830	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	22805830	55271418	16454	24605			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805861	22805861	+	Missense_Mutation	SNP	G	T	T													tcagcaaggattcttggttgGggaattccttgttgcactga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805861	T	T	22805861	3	4	9	1	0	0	0	0	1	0	0	0	18092	1232	43	2	1934	2	ZNF521	18	22805861	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	22805861	55271387	16455	24606	163	2	19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805869	22805869	+	Missense_Mutation	SNP	C	A	A													gattcttggttggggaattcCttgttgcactgaggacaggt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805869	A	A	22805869	3	1	9	1	0	0	0	0	1	0	0	0	18092	680	24	2	1942	2	ZNF521	18	22805869	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8	22805869	55271379	16456	24607	163	2	19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805916	22805916	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaagcacagtgtcgagatGagtttttaggtgagtctgaa	14	4	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805916	T	T	22805916	3	4	9	1	0	0	0	0	1	0	0	0	18092	1290	45	3	1989	3	ZNF521	18	22805916	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	47	22805916	55271332	16457	24608			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805964	22805964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggatgtgtacttagcacCacattgattacagatatatt	8	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805964	A	A	22805964	3	1	9	1	0	0	0	0	1	0	0	0	18092	594	21	2	2037	2	ZNF521	18	22805964	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48	22805964	55271284	16458	24609			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22805988	22805988	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgattacagatatattctcCagtgggacgtgcaggtgcac	11	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22805988	G	G	22805988	3	3	9	1	0	0	0	0	1	0	0	0	18092	603	21	4	2061	4	ZNF521	18	22805988	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	22805988	55271260	16459	24610			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22806255	22806255	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcactggagacccaaatcGggagccactgaggtcacaat	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22806255	T	T	22806255	2	4	9	1	0	0	0	0	0	0	0	1	18092	1124	39	1		1	ZNF521	18	22806255	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	267	22806255	55270993	16460	24611			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22806691	22806691	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaacttttgcttgtttactCgagggaccagtcatgtcagg	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22806691	A	A	22806691	2	1	9	1	0	0	0	0	0	0	0	1	18092	871	31	3		3	ZNF521	18	22806691	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	436	22806691	55270557	16461	24612			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22806738	22806738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagcggccctcttcctccCtcgactctttgggattggcg	11	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22806738	A	A	22806738	3	1	9	1	0	0	0	0	1	0	0	0	18092	681	24	2	2811	2	ZNF521	18	22806738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	22806738	55270510	16462	24613			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22806749	22806749	+	Missense_Mutation	SNP	G	T	T													tcttcctccctcgactctttGggattggcggggcagcttcc							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22806749	T	T	22806749	3	4	9	1	0	0	0	0	1	0	0	0	18092	1348	47	2	2822	2	ZNF521	18	22806749	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	22806749	55270499	16463	24614	164	2	19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22806758	22806758	+	Missense_Mutation	SNP	G	T	T													ctcgactctttgggattggcGgggcagcttccaccatggtt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22806758	T	T	22806758	3	4	9	1	0	0	0	0	1	0	0	0	18092	1116	39	1	2831	1	ZNF521	18	22806758	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	22806758	55270490	16464	24615	164	2	19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22807072	22807072	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcatttggggagcattcGgggtggcactctgcaatgtg	14	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22807072	T	T	22807072	2	4	9	1	0	0	0	0	0	0	0	1	18092	1103	39	1		1	ZNF521	18	22807072	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	314	22807072	55270176	16465	24616			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22807109	22807110	+	Missense_Mutation	DNP	GG	TT	TT													tgtgtttttggaggtcttccGggaagtcaaagccttcctca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22807110	TT	TT	22807109	3	4	9	1	0	0	0	0	1	0	0	0	18092	1116	39	1	3182	1	ZNF521	18	22807109	Missense_Mutation	DNP	GG	TCGA-05-4396-01A-21D-1855-08	37	22807109	55270139	16466	24617			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22807374	22807374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggtacttcttgtcccCggtgtggagttttatgtggc	14	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22807374	A	A	22807374	3	1	9	1	0	0	0	0	1	0	0	0	18092	652	23	1	3447	1	ZNF521	18	22807374	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	265	22807374	55269874	16467	24618			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22807400	22807400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagttttatgtggcgatctCggctgcgcttgtgtttgaac	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22807400	A	A	22807400	3	1	9	1	0	0	0	0	1	0	0	0	18092	884	31	3	3473	3	ZNF521	18	22807400	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26	22807400	55269848	16468	24619			19	22		32	29	3086	N	GG_G_C	6.494596e-24
ZNF521	25925	broad.mit.edu	37	chr18	22902147	22902147	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcttcaagtttacagttGgggtctgaaaaatatcaaca	8	6	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22902147	T	T	22902147	2	4	9	1	0	0	0	0	0	0	0	1	18092	1335	47	2		2	ZNF521	18	22902147	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	94747	22902147	55175101	16469	24620											
SS18	6760	broad.mit.edu	37	chr18	23612389	23612389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatccataaggcctctgctGgggtggctgtggtggtccag	15	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23612389	T	T	23612389	3	4	9	1	0	0	0	0	1	0	0	0	15293	1357	47	2	60	2	SS18	18	23612389	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	710242	23612389	54464859	16470	24621											
SS18	6760	broad.mit.edu	37	chr18	23618524	23618524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggagagattaccatcaGggtaatattgctggttcatg	11	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23618524	T	T	23618524	3	4	9	1	0	0	0	0	1	0	0	0	15293	1000	35	2	401	2	SS18	18	23618524	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6135	23618524	54458724	16471	24622											
SS18	6760	broad.mit.edu	37	chr18	23618585	23618585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgactgtattggtcccCgtaatagtcttcctggcctg	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23618585	A	A	23618585	3	1	9	1	0	0	0	0	1	0	0	0	15293	652	23	1	462	1	SS18	18	23618585	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	61	23618585	54458663	16472	24623											
SS18	6760	broad.mit.edu	37	chr18	23632775	23632775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcatattgagttgattGggtccaggtccctgcatagg	12	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23632775	T	T	23632775	2	4	9	1	0	0	0	0	0	0	0	1	15293	1335	47	2		2	SS18	18	23632775	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14190	23632775	54444473	16473	24624											
PSMA8	143471	broad.mit.edu	37	chr18	23731860	23731860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtagtaataaacagagccCgtgtggagtgccagagccat	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23731860	A	A	23731860	3	1	9	1	0	0	0	0	1	0	0	0	12779	652	23	1	296	1	PSMA8	18	23731860	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99085	23731860	54345388	16474	24625											
TAF4B	6875	broad.mit.edu	37	chr18	23845164	23845164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaaaagtaacagtggtcCgttgatgttggtatctcctc	10	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23845164	A	A	23845164	3	1	9	1	0	0	0	0	1	0	0	0	15646	652	23	1	380	1	TAF4B	18	23845164	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	113304	23845164	54232084	16475	24626											
KCTD1	284252	broad.mit.edu	37	chr18	24179574	24179574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttgtcgggtttagtccCgggaagcaccactctgcaca	10	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24179574	A	A	24179574	1	1	9	0	1	0	0	0	0	0	0	0	8166	667	23	1		1	KCTD1	18	24179574	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	334410	24179574	53897674	16476	24627											
AQP4	361	broad.mit.edu	37	chr18	24436280	24436280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttagaatcaggtcatcCgtctctacctgactcctgtt	8	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24436280	A	A	24436280	2	1	9	1	0	0	0	0	0	0	0	1	830	639	23	1		1	AQP4	18	24436280	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	256706	24436280	53640968	16477	24628											
CHST9	83539	broad.mit.edu	37	chr18	24496402	24496402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagctcctttggagcacCgatcatctgtaaaaagtaat	7	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24496402	A	A	24496402	3	1	9	1	0	0	0	0	1	0	0	0	3442	652	23	1	182	1	CHST9	18	24496402	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60122	24496402	53580846	16478	24629											
CDH2	1000	broad.mit.edu	37	chr18	25570243	25570243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggggggtgctgaattccCttggctaatggcacttgatt	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25570243	A	A	25570243	3	1	9	1	0	0	0	0	1	0	0	0	3135	680	24	2	1332	2	CDH2	18	25570243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1073841	25570243	52507005	16479	24630											
CDH2	1000	broad.mit.edu	37	chr18	25572639	25572639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaccacggtgactaaccCgtcgttgctgtttgggtcgg	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25572639	A	A	25572639	3	1	9	1	0	0	0	0	1	0	0	0	3135	652	23	1	1428	1	CDH2	18	25572639	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2396	25572639	52504609	16480	24631											
CDH2	1000	broad.mit.edu	37	chr18	25616621	25616621	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgagctgacggaaatgcCgatgcagctttttataactg	10	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25616621	G	G	25616621	1	3	9	0	1	0	0	0	0	0	0	0	3135	667	23	4		4	CDH2	18	25616621	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	43982	25616621	52460627	16481	24632											
DSC3	1825	broad.mit.edu	37	chr18	28574240	28574240	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttcactgcagcagccCacagaaccagctggagatcc	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28574240	A	A	28574240	2	1	9	1	0	0	0	0	0	0	0	1	4807	581	21	2		2	DSC3	18	28574240	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2957619	28574240	49503008	16482	24633											
DSC3	1825	broad.mit.edu	37	chr18	28576768	28576768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactcacttcaccgagacGgggttgagtaaaactgtgcc	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28576768	T	T	28576768	3	4	9	1	0	0	0	0	1	0	0	0	4807	1116	39	1	247	1	DSC3	18	28576768	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2528	28576768	49500480	16483	24634											
DSC1	1823	broad.mit.edu	37	chr18	28713916	28713916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttccaagtattacatttGgtctaacgtctcttgtactt	5	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28713916	T	T	28713916	3	4	9	1	0	0	0	0	1	0	0	0	4805	1348	47	2	686	2	DSC1	18	28713916	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	137148	28713916	49363332	16484	24635											
DSG1	1828	broad.mit.edu	37	chr18	28906958	28906958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaactcaaagaggaaccCaatcgccaaagtaggtatca	8	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28906958	A	A	28906958	3	1	9	1	0	0	0	0	1	0	0	0	4816	594	21	2	216	2	DSG1	18	28906958	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	193042	28906958	49170290	16485	24636											
DSG1	1828	broad.mit.edu	37	chr18	28923573	28923573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacattctaagaaatagcCgttggtagtcactgaaattc	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28923573	A	A	28923573	1	1	9	0	1	0	0	0	0	0	0	0	4816	667	23	1		1	DSG1	18	28923573	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16615	28923573	49153675	16486	24637											
DSG4	147409	broad.mit.edu	37	chr18	28968847	28968847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccacagatctattgccGggctctgaattcacggggtg	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28968847	T	T	28968847	3	4	9	1	0	0	0	0	1	0	0	0	4819	1116	39	1	401	1	DSG4	18	28968847	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45274	28968847	49108401	16487	24638											
DSG4	147409	broad.mit.edu	37	chr18	28971081	28971081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgtgagaggctcagatcGggatggagctgcagatggac	18	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28971081	T	T	28971081	3	4	9	1	0	0	0	0	1	0	0	0	4819	1116	39	1	751	1	DSG4	18	28971081	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2234	28971081	49106167	16488	24639											
DSG4	147409	broad.mit.edu	37	chr18	28979309	28979309	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctgattttcactactcCgttgcttctcaattccaaat	4	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28979309	A	A	28979309	2	1	9	1	0	0	0	0	0	0	0	1	4819	639	23	1		1	DSG4	18	28979309	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8228	28979309	49097939	16489	24640											
DSG4	147409	broad.mit.edu	37	chr18	28993169	28993169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgtgactgagacttacGgtaatgctgatccatgtgtg	11	6	0	3	rs148204447	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28993169	T	T	28993169	3	4	9	1	0	0	0	0	1	0	0	0	4819	1116	39	1	2917	1	DSG4	18	28993169	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13860	28993169	49084079	16490	24641											
DSG3	1830	broad.mit.edu	37	chr18	29046500	29046500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttcttacagaatacacGggtaaaacttctacaggcac	7	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29046500	T	T	29046500	2	4	9	1	0	0	0	0	0	0	0	1	4818	1103	39	1		1	DSG3	18	29046500	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	53331	29046500	49030748	16491	24642											
DSG3	1830	broad.mit.edu	37	chr18	29055626	29055626	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaagcatttgcctgtgcGgaggaagacgatggccagga	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29055626	T	T	29055626	2	4	9	1	0	0	0	0	0	0	0	1	4818	1103	39	1		1	DSG3	18	29055626	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9126	29055626	49021622	16492	24643											
DSG3	1830	broad.mit.edu	37	chr18	29056127	29056127	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaagggtgatctgtccCatttccagtgttcctggcaa	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29056127	A	A	29056127	2	1	9	1	0	0	0	0	0	0	0	1	4818	581	21	2		2	DSG3	18	29056127	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	501	29056127	49021121	16493	24644											
DSG3	1830	broad.mit.edu	37	chr18	29056212	29056212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacagaggatccttgctccCgtctaatatgaccagaatga	9	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29056212	A	A	29056212	3	1	9	1	0	0	0	0	1	0	0	0	4818	652	23	1	3051	1	DSG3	18	29056212	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85	29056212	49021036	16494	24645											
DSG2	1829	broad.mit.edu	37	chr18	29111051	29111051	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaatacaagcctacaccCattcccatcaaggtcaaagt	5	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29111051	A	A	29111051	2	1	9	1	0	0	0	0	0	0	0	1	4817	581	21	2		2	DSG2	18	29111051	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54839	29111051	48966197	16495	24646											
DSG2	1829	broad.mit.edu	37	chr18	29125704	29125704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcggcctcttacactgaGgaagatgaaaatcacacagc	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29125704	T	T	29125704	3	4	9	1	0	0	0	0	1	0	0	0	4817	991	35	2	2413	2	DSG2	18	29125704	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14653	29125704	48951544	16496	24647											
B4GALT6	9331	broad.mit.edu	37	chr18	29237835	29237835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataatataaacatttgcaCccaggtgcacatgacctgct	7	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237835	A	A	29237835	1	1	9	0	1	0	0	0	0	0	0	0	1280	522	18	3		3	B4GALT6	18	29237835	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	112131	29237835	48839413	16497	24648											
MCART2	147407	broad.mit.edu	37	chr18	29340428	29340428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactgaagtactgcatccCgggttttgatgccatacagc	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29340428	A	A	29340428	3	1	9	1	0	0	0	0	1	0	0	0	9463	652	23	1	700	1	MCART2	18	29340428	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102593	29340428	48736820	16498	24649											
KIAA1012	22878	broad.mit.edu	37	chr18	29435729	29435729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccgtacatttaaagacCgactggtacaaataattgca	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29435729	A	A	29435729	3	1	9	1	0	0	0	0	1	0	0	0	8274	652	23	1	1113	1	KIAA1012	18	29435729	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95301	29435729	48641519	16499	24650											
RNF125	54941	broad.mit.edu	37	chr18	29617091	29617091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtagattctgccgttcCtgtattgctaccagtctaaa	10	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29617091	A	A	29617091	2	1	9	1	0	0	0	0	0	0	0	1	13545	668	24	2		2	RNF125	18	29617091	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	181362	29617091	48460157	16500	24651											
RNF125	54941	broad.mit.edu	37	chr18	29645891	29645891	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactttgccgtttaataccCgatgagaatccaagcagctt	7	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29645891	A	A	29645891	2	1	9	1	0	0	0	0	0	0	0	1	13545	639	23	1		1	RNF125	18	29645891	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	28800	29645891	48431357	16501	24652											
RNF138	51444	broad.mit.edu	37	chr18	29703524	29703524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgataacacagaaacttacCaagagaatacaaggtaagct	7	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29703524	A	A	29703524	3	1	9	1	0	0	0	0	1	0	0	0	13552	595	21	2	450	2	RNF138	18	29703524	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	57633	29703524	48373724	16502	24653											
MEP1B	4225	broad.mit.edu	37	chr18	29775447	29775447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgttctagaagatagcttGggttagtatgcaccttgaag	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29775447	T	T	29775447	3	4	9	1	0	0	0	0	1	0	0	0	9569	1362	47	2	267	2	MEP1B	18	29775447	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71923	29775447	48301801	16503	24654											
MEP1B	4225	broad.mit.edu	37	chr18	29788089	29788089	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctttttgtagcctcttcCttgagttttatggactcgtg	9	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29788089	A	A	29788089	2	1	9	1	0	0	0	0	0	0	0	1	9569	668	24	2		2	MEP1B	18	29788089	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12642	29788089	48289159	16504	24655											
MEP1B	4225	broad.mit.edu	37	chr18	29788106	29788106	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccttgagttttatggactCgtgcagttttgaactggaaa	10	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29788106	A	A	29788106	4	1	9	1	0	0	0	0	0	1	0	0	9569	893	31	3	825	3	MEP1B	18	29788106	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17	29788106	48289142	16505	24656											
KLHL14	57565	broad.mit.edu	37	chr18	30254761	30254761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagatgacttgtaggccccCtgtaatgacagaggagggag	15	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30254761	A	A	30254761	1	1	9	0	1	0	0	0	0	0	0	0	8441	695	24	2		2	KLHL14	18	30254761	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	466655	30254761	47822487	16506	24657											
KLHL14	57565	broad.mit.edu	37	chr18	30260242	30260242	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccagacatccattactGggtcatagcaatatagccat	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30260242	T	T	30260242	3	4	9	1	0	0	0	0	1	0	0	0	8441	1348	47	2	420	2	KLHL14	18	30260242	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5481	30260242	47817006	16507	24658											
C18orf34	374864	broad.mit.edu	37	chr18	30913158	30913158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccattttttttttataatGgttcttcagatcttgaagtt	5	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30913158	T	T	30913158	3	4	9	1	0	0	0	0	1	0	0	0	1920	1348	47	2	1800	2	C18orf34	18	30913158	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	652916	30913158	47164090	16508	24659											
ASXL3	80816	broad.mit.edu	37	chr18	31319522	31319522	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttaacatcagaaacctcaccGatgtctgacttacctttaac	4	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31319522	A	A	31319522	2	1	9	1	0	0	0	0	0	0	0	1	1072	1045	37	4		4	ASXL3	18	31319522	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	406364	31319522	46757726	16509	24660											
ASXL3	80816	broad.mit.edu	37	chr18	31319636	31319636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaacatctccaatttcCaactcttccataaatgagag	4	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31319636	A	A	31319636	2	1	9	1	0	0	0	0	0	0	0	1	1072	581	21	2		2	ASXL3	18	31319636	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	114	31319636	46757612	16510	24661											
ASXL3	80816	broad.mit.edu	37	chr18	31325208	31325208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagaaacgttgaaattcCgcccagctctccaaatccag	8	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31325208	A	A	31325208	3	1	9	1	0	0	0	0	1	0	0	0	1072	652	23	1	5442	1	ASXL3	18	31325208	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5572	31325208	46752040	16511	24662											
ASXL3	80816	broad.mit.edu	37	chr18	31325292	31325292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaagcgagaaaaccaccCcaaaaagagagtagctagga	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31325292	A	A	31325292	3	1	9	1	0	0	0	0	1	0	0	0	1072	623	22	2	5526	2	ASXL3	18	31325292	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84	31325292	46751956	16512	24663											
ASXL3	80816	broad.mit.edu	37	chr18	31326298	31326298	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaatacactttggtagcacGagtttcaaaagggcagcatc	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31326298	T	T	31326298	2	4	9	1	0	0	0	0	0	0	0	1	1072	1045	37	3		3	ASXL3	18	31326298	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1006	31326298	46750950	16513	24664											
DTNA	1837	broad.mit.edu	37	chr18	32395925	32395925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttatgtcagatcctccccCgcagtgtctggtctggttgc	11	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32395925	A	A	32395925	3	1	9	1	0	0	0	0	1	0	0	0	4828	652	23	1	678	1	DTNA	18	32395925	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1069627	32395925	45681323	16514	24665											
ZNF397OS	100101467	broad.mit.edu	37	chr18	32834231	32834231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagcttcttcagctatcCgttgggaatgtgtttctcca	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32834231	A	A	32834231	3	1	9	1	0	0	0	0	1	0	0	0	18011	652	23	1	820	1	ZNF397OS	18	32834231	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	438306	32834231	45243017	16515	24666											
INO80C	125476	broad.mit.edu	37	chr18	33060528	33060528	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcttccatgctgataccCttaaaacataataaaaatag	5	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33060528	A	A	33060528	5	1	9	1	0	0	0	0	0	0	1	0	7818	695	24	2	438	2	INO80C	18	33060528	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	226297	33060528	45016720	16516	24667											
RPRD1A	55197	broad.mit.edu	37	chr18	33607052	33607052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttatctaagaaaagcacGggataataaaatattataca	5	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33607052	T	T	33607052	1	4	9	0	1	0	0	0	0	0	0	0	13726	1131	39	1		1	RPRD1A	18	33607052	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	546524	33607052	44470196	16517	24668											
SLC39A6	25800	broad.mit.edu	37	chr18	33706229	33706229	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatacataaagccttttcGgggctcactcacagattcat	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33706229	T	T	33706229	2	4	9	1	0	0	0	0	0	0	0	1	14736	1124	39	1		1	SLC39A6	18	33706229	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	99177	33706229	44371019	16518	24669											
SLC39A6	25800	broad.mit.edu	37	chr18	33706813	33706813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttgtagatgatattgcCgtgtggaaattgccaagtca	12	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33706813	A	A	33706813	3	1	9	1	0	0	0	0	1	0	0	0	14736	652	23	1	2157	1	SLC39A6	18	33706813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	584	33706813	44370435	16519	24670											
ELP2	55250	broad.mit.edu	37	chr18	33725011	33725011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaaggtaggaagaaaacCatacacatatcccttactcc	5	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33725011	A	A	33725011	1	1	9	0	1	0	0	0	0	0	0	0	5122	609	21	2		2	ELP2	18	33725011	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18198	33725011	44352237	16520	24671											
ELP2	55250	broad.mit.edu	37	chr18	33736465	33736465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaaggcctcagatacatGggtatgacctgaaatgtttg	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33736465	T	T	33736465	3	4	9	1	0	0	0	0	1	0	0	0	5122	1348	47	2	1362	2	ELP2	18	33736465	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11454	33736465	44340783	16521	24672											
FHOD3	80206	broad.mit.edu	37	chr18	34322581	34322581	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaggagcaatgcccatcgcGggggattgccttgtgctggg	16	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34322581	C	C	34322581	1	2	9	0	1	0	0	0	0	0	0	0	5940	1131	39	4		4	FHOD3	18	34322581	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	586116	34322581	43754667	16522	24673											
FHOD3	80206	broad.mit.edu	37	chr18	34327023	34327023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaccagttttaaaacaacGgatgtcagagttcctgaaag	9	7	1	2	rs138484144		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34327023	T	T	34327023	3	4	9	1	0	0	0	0	1	0	0	0	5940	1116	39	1	3714	1	FHOD3	18	34327023	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4442	34327023	43750225	16523	24674											
FHOD3	80206	broad.mit.edu	37	chr18	34349268	34349268	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggaactgatgactcgccCaatgtcacagatgatgcagc	11	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34349268	A	A	34349268	2	1	9	1	0	0	0	0	0	0	0	1	5940	581	21	2		2	FHOD3	18	34349268	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	22245	34349268	43727980	16524	24675											
C18orf10	25941	broad.mit.edu	37	chr18	34380163	34380163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtaaacaattcttacctGgtttcccacttttgtagaca	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34380163	T	T	34380163	3	4	9	1	0	0	0	0	1	0	0	0	1913	1348	47	2	420	2	C18orf10	18	34380163	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30895	34380163	43697085	16525	24676											
C18orf10	25941	broad.mit.edu	37	chr18	34380236	34380236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagctcaaatatcacactgcGagagtcaaagtgaggcttct	9	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34380236	T	T	34380236	3	4	9	1	0	0	0	0	1	0	0	0	1913	1058	37	3	493	3	C18orf10	18	34380236	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73	34380236	43697012	16526	24677											
C18orf10	25941	broad.mit.edu	37	chr18	34387847	34387847	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtcatgtggaagccattGgtcatcaggtaaaagttctt	10	7	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34387847	T	T	34387847	2	4	9	1	0	0	0	0	0	0	0	1	1913	1335	47	2		2	C18orf10	18	34387847	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7611	34387847	43689401	16527	24678											
KIAA1328	57536	broad.mit.edu	37	chr18	34753082	34753082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagtttttaatattctccCtatgagagcatttttttgaa	5	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34753082	A	A	34753082	1	1	9	0	1	0	0	0	0	0	0	0	8295	696	24	2		2	KIAA1328	18	34753082	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	365235	34753082	43324166	16528	24679											
PIK3C3	5289	broad.mit.edu	37	chr18	39573237	39573237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgctctgtaatctaggacGgtgatgaatcatctccaatt	8	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39573237	T	T	39573237	3	4	9	1	0	0	0	0	1	0	0	0	12007	1116	39	1	744	1	PIK3C3	18	39573237	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4820155	39573237	38504011	16529	24680											
PIK3C3	5289	broad.mit.edu	37	chr18	39575890	39575890	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaacaccacaagcttgccCggagtttaagaagtggacct	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39575890	A	A	39575890	2	1	9	1	0	0	0	0	0	0	0	1	12007	643	23	1		1	PIK3C3	18	39575890	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2653	39575890	38501358	16530	24681											
RIT2	6014	broad.mit.edu	37	chr18	40503709	40503709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcgcatgtactgctccCgcatggctgtgaattctgcc	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40503709	A	A	40503709	3	1	9	1	0	0	0	0	1	0	0	0	13498	652	23	1	407	1	RIT2	18	40503709	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	927819	40503709	37573539	16531	24682											
SYT4	6860	broad.mit.edu	37	chr18	40854018	40854018	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttttccccttctaaaaAgagcttcggggttgcattct	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40854018	G	G	40854018	3	3	9	1	0	0	0	0	1	0	0	0	15595	72	3	5	913	5	SYT4	18	40854018	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	350309	40854018	37223230	16532	24683											
SETBP1	26040	broad.mit.edu	37	chr18	42281738	42281738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaccagaaggtgtccCgtgctggaaaaaatagcaaa	13	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42281738	A	A	42281738	3	1	9	1	0	0	0	0	1	0	0	0	14242	652	23	1	429	1	SETBP1	18	42281738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1427720	42281738	35795510	16533	24684											
SETBP1	26040	broad.mit.edu	37	chr18	42529890	42529890	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaactctccattatgacacGggcctcccacaggacttcac	6	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42529890	T	T	42529890	2	4	9	1	0	0	0	0	0	0	0	1	14242	1103	39	1		1	SETBP1	18	42529890	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	248152	42529890	35547358	16534	24685											
SETBP1	26040	broad.mit.edu	37	chr18	42530298	42530298	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccagaaccacctacggtGggcagcaagaaaaagtccag	10	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42530298	T	T	42530298	2	4	9	1	0	0	0	0	0	0	0	1	14242	1335	47	2		2	SETBP1	18	42530298	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	408	42530298	35546950	16535	24686											
SETBP1	26040	broad.mit.edu	37	chr18	42532011	42532011	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctccctggacaacccGgaggccattccgtccgacac	9	17	1	0	rs113916801	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42532011	T	T	42532011	2	4	9	1	0	0	0	0	0	0	0	1	14242	1103	39	1		1	SETBP1	18	42532011	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1713	42532011	35545237	16536	24687											
SLC14A2	8170	broad.mit.edu	37	chr18	43204713	43204713	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggcagagtttaccagcccGagctggccctcgacatcccc	11	16	0	1	rs117646722	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43204713	T	T	43204713	2	4	9	1	0	0	0	0	0	0	0	1	14510	1045	37	3		3	SLC14A2	18	43204713	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	672702	43204713	34872535	16537	24688											
SLC14A2	8170	broad.mit.edu	37	chr18	43216925	43216925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacctcaggatgtcacagGgattaaccctctgtctcttg	9	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43216925	T	T	43216925	1	4	9	0	1	0	0	0	0	0	0	0	14510	1247	43	2		2	SLC14A2	18	43216925	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	12212	43216925	34860323	16538	24689											
SLC14A2	8170	broad.mit.edu	37	chr18	43217005	43217005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagcaagtgggacctccCggtcttcactctgcccttca	8	16	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43217005	A	A	43217005	3	1	9	1	0	0	0	0	1	0	0	0	14510	652	23	1	719	1	SLC14A2	18	43217005	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	43217005	34860243	16539	24690											
SLC14A2	8170	broad.mit.edu	37	chr18	43219732	43219732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttacaagccatccctgttGgggtcggccaggtgtatggc	14	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43219732	T	T	43219732	3	4	9	1	0	0	0	0	1	0	0	0	14510	1348	47	2	887	2	SLC14A2	18	43219732	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2727	43219732	34857516	16540	24691											
SLC14A2	8170	broad.mit.edu	37	chr18	43224024	43224024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgacgacaaacaaccCagccatcttcagactcccac	5	18	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43224024	A	A	43224024	3	1	9	1	0	0	0	0	1	0	0	0	14510	594	21	2	1284	2	SLC14A2	18	43224024	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4292	43224024	34853224	16541	24692											
SLC14A2	8170	broad.mit.edu	37	chr18	43249373	43249373	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgtacctggcagccacGggccactacaaccttttctt	7	14	1	0	rs142900689		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43249373	T	T	43249373	2	4	9	1	0	0	0	0	0	0	0	1	14510	1103	39	1		1	SLC14A2	18	43249373	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25349	43249373	34827875	16542	24693											
SLC14A2	8170	broad.mit.edu	37	chr18	43262287	43262287	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttctttctctccagtttGgattgccgccctgcacttgg	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43262287	T	T	43262287	4	4	9	1	0	0	0	0	0	1	0	0	14510	1349	47	2	2640	2	SLC14A2	18	43262287	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12914	43262287	34814961	16543	24694											
SLC14A2	8170	broad.mit.edu	37	chr18	43262375	43262375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgccatctacaagctccCgctcagcaaagtcacctacc	5	20	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43262375	A	A	43262375	3	1	9	1	0	0	0	0	1	0	0	0	14510	652	23	1	2728	1	SLC14A2	18	43262375	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	43262375	34814873	16544	24695											
SLC14A1	6563	broad.mit.edu	37	chr18	43311053	43311053	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgttcgtcaacaacccCgtcagtggaatcctgattct	10	11	3	1	rs140257106		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43311053	A	A	43311053	2	1	9	1	0	0	0	0	0	0	0	1	14509	639	23	1		1	SLC14A1	18	43311053	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	48678	43311053	34766195	16545	24696											
KIAA1632	57724	broad.mit.edu	37	chr18	43440212	43440212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtccggatactgcccCgaaggaactctgctgttgga	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43440212	A	A	43440212	3	1	9	1	0	0	0	0	1	0	0	0	8319	652	23	1	893	1	KIAA1632	18	43440212	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129159	43440212	34637036	16546	24697											
KIAA1632	57724	broad.mit.edu	37	chr18	43450515	43450515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctctaggctgcgatgccGggaatgaagggcttactttg	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43450515	T	T	43450515	1	4	9	0	1	0	0	0	0	0	0	0	8319	1131	39	1		1	KIAA1632	18	43450515	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10303	43450515	34626733	16547	24698											
KIAA1632	57724	broad.mit.edu	37	chr18	43459085	43459085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacatcagccatataaggaCtccattttgagaataaacca	5	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43459085	A	A	43459085	3	1	9	1	0	0	0	0	1	0	0	0	8319	565	20	3	2025	3	KIAA1632	18	43459085	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8570	43459085	34618163	16548	24699											
KIAA1632	57724	broad.mit.edu	37	chr18	43462361	43462361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatctggttcaaggcccCaggcagtaagtgccaagtga	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43462361	A	A	43462361	3	1	9	1	0	0	0	0	1	0	0	0	8319	595	21	2	2399	2	KIAA1632	18	43462361	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3276	43462361	34614887	16549	24700											
KIAA1632	57724	broad.mit.edu	37	chr18	43496370	43496370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggttgggaagacaggcGggagtgtgcttaggggcttg	19	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43496370	T	T	43496370	1	4	9	0	1	0	0	0	0	0	0	0	8319	1131	39	1		1	KIAA1632	18	43496370	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34009	43496370	34580878	16550	24701											
KIAA1632	57724	broad.mit.edu	37	chr18	43505803	43505803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaccaatcccgaatcacCgctatctcagatgcagaagg	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43505803	A	A	43505803	2	1	9	1	0	0	0	0	0	0	0	1	8319	639	23	1		1	KIAA1632	18	43505803	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9433	43505803	34571445	16551	24702											
PSTPIP2	9050	broad.mit.edu	37	chr18	43577709	43577709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagcagcttccggttacGggtacctcgcaggccttgat	12	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43577709	T	T	43577709	1	4	9	0	1	0	0	0	0	0	0	0	12828	1131	39	1		1	PSTPIP2	18	43577709	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	71906	43577709	34499539	16552	24703											
PSTPIP2	9050	broad.mit.edu	37	chr18	43577753	43577753	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactctgccactcttctcGgaccttatccagggtgccga	8	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43577753	T	T	43577753	2	4	9	1	0	0	0	0	0	0	0	1	12828	1124	39	1		1	PSTPIP2	18	43577753	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	43577753	34499495	16553	24704											
PSTPIP2	9050	broad.mit.edu	37	chr18	43579418	43579418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccttttcttgttgcttcGggttcaccaggttggcactc	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43579418	T	T	43579418	3	4	9	1	0	0	0	0	1	0	0	0	12828	1116	39	1	536	1	PSTPIP2	18	43579418	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1665	43579418	34497830	16554	24705											
C18orf25	147339	broad.mit.edu	37	chr18	43796179	43796179	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcagatacgttgtcttcCgcagaagagaatgaaccctc	9	10	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43796179	A	A	43796179	2	1	9	1	0	0	0	0	0	0	0	1	1917	639	23	1		1	C18orf25	18	43796179	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	216761	43796179	34281069	16555	24706											
RNF165	494470	broad.mit.edu	37	chr18	44030290	44030290	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatccgaaactacccttaccCtcagcttcacttccttgctc	3	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44030290	G	G	44030290	3	3	9	1	0	0	0	0	1	0	0	0	13567	681	24	4	665	4	RNF165	18	44030290	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	234111	44030290	34046958	16556	24707											
RNF165	494470	broad.mit.edu	37	chr18	44036452	44036452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtccctcagctcttgccGggcctctgactctccctcct	8	18	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44036452	T	T	44036452	1	4	9	0	1	0	0	0	0	0	0	0	13567	1131	39	1		1	RNF165	18	44036452	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6162	44036452	34040796	16557	24708											
ST8SIA5	29906	broad.mit.edu	37	chr18	44260149	44260149	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgagtgatgtagaggccCgaggggttcatggggaaggc	20	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44260149	A	A	44260149	2	1	9	1	0	0	0	0	0	0	0	1	15353	639	23	1		1	ST8SIA5	18	44260149	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	223697	44260149	33817099	16558	24709											
PIAS2	9063	broad.mit.edu	37	chr18	44409714	44409714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttctatttttgtacacGgttggctggatactttcata	7	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44409714	T	T	44409714	3	4	9	1	0	0	0	0	1	0	0	0	11971	1116	39	1	641	1	PIAS2	18	44409714	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	149565	44409714	33667534	16559	24710											
PIAS2	9063	broad.mit.edu	37	chr18	44424018	44424018	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgttgctttacttacaGggcacatcaaggatacccga	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44424018	T	T	44424018	3	4	9	1	0	0	0	0	1	0	0	0	11971	1014	35	2	928	2	PIAS2	18	44424018	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	14304	44424018	33653230	16560	24711											
PIAS2	9063	broad.mit.edu	37	chr18	44424036	44424036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggcacatcaaggataccCgaaggctagttgtagcaatt	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44424036	A	A	44424036	3	1	9	1	0	0	0	0	1	0	0	0	11971	652	23	1	946	1	PIAS2	18	44424036	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	44424036	33653212	16561	24712											
PIAS2	9063	broad.mit.edu	37	chr18	44426657	44426657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcctgctacccaaaacGgagagcttttaccttcccaa	6	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44426657	T	T	44426657	1	4	9	0	1	0	0	0	0	0	0	0	11971	1131	39	1		1	PIAS2	18	44426657	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2621	44426657	33650591	16562	24713											
TCEB3C	162699	broad.mit.edu	37	chr18	44554643	44554643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggccactttcttggcaGcctgttttcgggttttgtcc	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44554643	T	T	44554643	3	4	9	1	0	0	0	0	1	0	0	0	15805	971	34	3	1716	3	TCEB3C	18	44554643	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127986	44554643	33522605	16563	24714											
TCEB3C	162699	broad.mit.edu	37	chr18	44555177	44555177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagggcgtccggattgttcCtaggcacccggaggcactgc	15	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44555177	A	A	44555177	3	1	9	1	0	0	0	0	1	0	0	0	15805	681	24	2	2250	2	TCEB3C	18	44555177	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	534	44555177	33522071	16564	24715											
TCEB3B	51224	broad.mit.edu	37	chr18	44560088	44560088	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggcaggcctggagccCgagtacaccggcatcttagc	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44560088	A	A	44560088	2	1	9	1	0	0	0	0	0	0	0	1	15804	639	23	1		1	TCEB3B	18	44560088	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4911	44560088	33517160	16565	24716											
KATNAL2	83473	broad.mit.edu	37	chr18	44579304	44579304	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactaaactggggttacgacGgtttgaagtttgtgacaaca	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44579304	T	T	44579304	1	4	9	0	1	0	0	0	0	0	0	0	8056	1131	39	1		1	KATNAL2	18	44579304	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	19216	44579304	33497944	16566	24717											
KATNAL2	83473	broad.mit.edu	37	chr18	44584675	44584675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccggtccaaaaccacagcGgggaagacaggggacaccaa	12	14	0	1	rs144860304	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44584675	T	T	44584675	2	4	9	1	0	0	0	0	0	0	0	1	8056	1103	39	1		1	KATNAL2	18	44584675	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5371	44584675	33492573	16567	24718											
HDHD2	84064	broad.mit.edu	37	chr18	44641487	44641487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagctgggagcacctcctGggttcttctacttacatctc	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44641487	T	T	44641487	1	4	9	0	1	0	0	0	0	0	0	0	7090	1363	47	2		2	HDHD2	18	44641487	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	56812	44641487	33435761	16568	24719											
KIAA0427	9811	broad.mit.edu	37	chr18	46284698	46284698	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaaagacagtattcttccCgagcgcatcggggagcggcc	13	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46284698	A	A	46284698	2	1	9	1	0	0	0	0	0	0	0	1	8246	639	23	1		1	KIAA0427	18	46284698	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1643211	46284698	31792550	16569	24720											
KIAA0427	9811	broad.mit.edu	37	chr18	46343717	46343717	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcgagcccttccgtgtgctCgtgtgccccatctacacctg	11	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46343717	A	A	46343717	2	1	9	1	0	0	0	0	0	0	0	1	8246	871	31	3		3	KIAA0427	18	46343717	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	59019	46343717	31733531	16570	24721											
DYM	54808	broad.mit.edu	37	chr18	46570478	46570478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggattccagtacaggcCgactgctgagttgtagacaa	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46570478	A	A	46570478	3	1	9	1	0	0	0	0	1	0	0	0	4880	652	23	1	56	1	DYM	18	46570478	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	226761	46570478	31506770	16571	24722											
ACAA2	10449	broad.mit.edu	37	chr18	47329179	47329179	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtctttcagaaggcctcCgtaagctccaaagggcgttc	11	11	2	1	rs147007453	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47329179	A	A	47329179	4	1	9	1	0	0	0	0	0	1	0	0	105	661	23	1	1168	1	ACAA2	18	47329179	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	758701	47329179	30748069	16572	24723											
ACAA2	10449	broad.mit.edu	37	chr18	47340508	47340508	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaggctagggcgctttcGggtccccattgcagcccccg	13	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47340508	T	T	47340508	1	4	9	0	1	0	0	0	0	0	0	0	105	1131	39	1		1	ACAA2	18	47340508	5'Flank	SNP	G	TCGA-05-4396-01A-21D-1855-08	11329	47340508	30736740	16573	24724											
MYO5B	4645	broad.mit.edu	37	chr18	47398568	47398568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggccagatctgcattcGggtccaaatctatgtcagtc	10	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47398568	T	T	47398568	3	4	9	1	0	0	0	0	1	0	0	0	10173	1116	39	1	2030	1	MYO5B	18	47398568	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58060	47398568	30678680	16574	24725											
MYO5B	4645	broad.mit.edu	37	chr18	47398600	47398600	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcagtctgtggtggttcCgcctgcatggatagagacac	13	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47398600	A	A	47398600	2	1	9	1	0	0	0	0	0	0	0	1	10173	639	23	1		1	MYO5B	18	47398600	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	47398600	30678648	16575	24726											
MYO5B	4645	broad.mit.edu	37	chr18	47398639	47398639	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaaagataagtgcagacctCgagcaagatattccacagag	9	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47398639	A	A	47398639	1	1	9	0	1	0	0	0	0	0	0	0	10173	899	31	3		3	MYO5B	18	47398639	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	47398639	30678609	16576	24727											
MYO5B	4645	broad.mit.edu	37	chr18	47406769	47406769	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcacaggatttggttgttGagctgttctttctcatcttt	10	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47406769	T	T	47406769	2	4	9	1	0	0	0	0	0	0	0	1	10173	1277	45	3		3	MYO5B	18	47406769	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8130	47406769	30670479	16577	24728											
MYO5B	4645	broad.mit.edu	37	chr18	47438511	47438511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttcttgaccagcaccCgataccggttgaaaaagtca	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47438511	A	A	47438511	3	1	9	1	0	0	0	0	1	0	0	0	10173	652	23	1	3515	1	MYO5B	18	47438511	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	31742	47438511	30638737	16578	24729											
MYO5B	4645	broad.mit.edu	37	chr18	47479669	47479669	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatctgctcttcatacacCgtgtctctgtttttctccag	6	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47479669	A	A	47479669	2	1	9	1	0	0	0	0	0	0	0	1	10173	639	23	1		1	MYO5B	18	47479669	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41158	47479669	30597579	16579	24730											
MYO5B	4645	broad.mit.edu	37	chr18	47566635	47566635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaagatatctggattcCgtaagaagggcagctggttg	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47566635	A	A	47566635	3	1	9	1	0	0	0	0	1	0	0	0	10173	652	23	1	5510	1	MYO5B	18	47566635	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86966	47566635	30510613	16580	24731											
CCDC11	220136	broad.mit.edu	37	chr18	47753912	47753912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttccttctctgcttcttGggactgctgctggtaggcga	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47753912	T	T	47753912	3	4	9	1	0	0	0	0	1	0	0	0	2772	1357	47	2	164	2	CCDC11	18	47753912	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	187277	47753912	30323336	16581	24732											
CCDC11	220136	broad.mit.edu	37	chr18	47777208	47777208	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcatgttcaagtcctgttCgtctctgtattcctgctgaa	7	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47777208	A	A	47777208	4	1	9	1	0	0	0	0	0	1	0	0	2772	893	31	3	644	3	CCDC11	18	47777208	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	23296	47777208	30300040	16582	24733											
CCDC11	220136	broad.mit.edu	37	chr18	47778003	47778003	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcttttccttggctaatcGgtcttcctcccagagtttgg	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47778003	T	T	47778003	2	4	9	1	0	0	0	0	0	0	0	1	2772	1124	39	1		1	CCDC11	18	47778003	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	795	47778003	30299245	16583	24734											
CCDC11	220136	broad.mit.edu	37	chr18	47787401	47787401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttaatgtaccaactttGgattctgtttgtgtgttttc	7	5	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47787401	T	T	47787401	1	4	9	0	1	0	0	0	0	0	0	0	2772	1363	47	2		2	CCDC11	18	47787401	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	9398	47787401	30289847	16584	24735											
MBD1	4152	broad.mit.edu	37	chr18	47796170	47796170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatccatcttcccttccCgagtgcctgccctgcagact	6	17	1	1	rs149041092	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47796170	A	A	47796170	1	1	9	0	1	0	0	0	0	0	0	0	9434	639	23	1		1	MBD1	18	47796170	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8769	47796170	30281078	16585	24736											
MBD1	4152	broad.mit.edu	37	chr18	47799197	47799197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccccagcactgaccacGggtgtgccagcccctcctgc	10	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47799197	T	T	47799197	2	4	9	1	0	0	0	0	0	0	0	1	9434	1103	39	1		1	MBD1	18	47799197	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3027	47799197	30278051	16586	24737											
CXXC1	30827	broad.mit.edu	37	chr18	47812543	47812543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccctccaccctcatccCggggctcactgctgtcccgc	9	21	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47812543	A	A	47812543	3	1	9	1	0	0	0	0	1	0	0	0	4130	652	23	1	1722	1	CXXC1	18	47812543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13346	47812543	30264705	16587	24738											
CXXC1	30827	broad.mit.edu	37	chr18	47812576	47812576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccgctcattgccatccCgctcccgtgacttcttgtgc	8	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47812576	A	A	47812576	3	1	9	1	0	0	0	0	1	0	0	0	4130	652	23	1	1755	1	CXXC1	18	47812576	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	47812576	30264672	16588	24739											
SKA1	220134	broad.mit.edu	37	chr18	47908565	47908565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaagaaaacgttccttccCatttgcctcaagtaacagta	5	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47908565	A	A	47908565	3	1	9	1	0	0	0	0	1	0	0	0	14465	594	21	2	290	2	SKA1	18	47908565	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95989	47908565	30168683	16589	24740											
SKA1	220134	broad.mit.edu	37	chr18	47911643	47911643	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttgaagaacctgaaccCgtaaagaagcctcccaaaga	8	10	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47911643	A	A	47911643	2	1	9	1	0	0	0	0	0	0	0	1	14465	639	23	1		1	SKA1	18	47911643	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3078	47911643	30165605	16590	24741											
MRO	83876	broad.mit.edu	37	chr18	48350322	48350322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagccaagatatacacCatatttacagagctcatggt	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48350322	A	A	48350322	1	1	9	0	1	0	0	0	0	0	0	0	9866	609	21	2		2	MRO	18	48350322	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	438679	48350322	29726926	16591	24742											
ME2	4200	broad.mit.edu	37	chr18	48450497	48450497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaaatagatagttatcaGgaaccatttactcactcagc	6	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48450497	T	T	48450497	3	4	9	1	0	0	0	0	1	0	0	0	9511	991	35	2	1124	2	ME2	18	48450497	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	100175	48450497	29626751	16592	24743											
ME2	4200	broad.mit.edu	37	chr18	48450553	48450553	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatacttttgaagatgcagTgaatatactgaagccttcaa	8	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48450553	C	C	48450553	3	2	9	1	0	0	0	0	1	0	0	0	9511	1696	59	5	1180	5	ME2	18	48450553	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	56	48450553	29626695	16593	24744											
ME2	4200	broad.mit.edu	37	chr18	48458661	48458661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccagtggcagtccatttGggccagtgaaacttacagat	11	9	0	2	rs74955554		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48458661	T	T	48458661	3	4	9	1	0	0	0	0	1	0	0	0	9511	1348	47	2	1394	2	ME2	18	48458661	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8108	48458661	29618587	16594	24745											
ME2	4200	broad.mit.edu	37	chr18	48466694	48466694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacagatgaagagctagccCaagggagactttacccaccg	11	11	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48466694	A	A	48466694	3	1	9	1	0	0	0	0	1	0	0	0	9511	595	21	2	1579	2	ME2	18	48466694	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8033	48466694	29610554	16595	24746											
SMAD4	4089	broad.mit.edu	37	chr18	48573609	48573609	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacagctataactacaaatGgagctcatcctagtaaatgt	6	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48573609	T	T	48573609	4	4	9	1	0	0	0	0	0	1	0	0	14874	1349	47	2	195	2	SMAD4	18	48573609	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106915	48573609	29503639	16596	24747											
DCC	1630	broad.mit.edu	37	chr18	50731597	50731597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatacagtgcaagttccaGggccagtagaaaacctgcaa	9	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50731597	T	T	50731597	3	4	9	1	0	0	0	0	1	0	0	0	4315	1000	35	2	1623	2	DCC	18	50731597	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2157988	50731597	27345651	16597	24748											
DCC	1630	broad.mit.edu	37	chr18	50734108	50734108	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaaattcaccgaataTagtcttcgattcttagctta	5	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50734108	A	A	50734108	4	1	9	1	0	0	0	0	0	1	0	0	4315	1413	49	5	1824	5	DCC	18	50734108	Nonsense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	2511	50734108	27343140	16598	24749											
DCC	1630	broad.mit.edu	37	chr18	50734144	50734144	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttataatcgctatggtccGggcgtctctactgatgatat	10	9	1	2	rs143737066	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50734144	C	C	50734144	2	2	9	1	0	0	0	0	0	0	0	1	4315	1103	39	4		4	DCC	18	50734144	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	50734144	27343104	16599	24750											
DCC	1630	broad.mit.edu	37	chr18	50832035	50832035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgacacagaaagacgaccCgcaggggtgagatggaaaca	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50832035	A	A	50832035	3	1	9	1	0	0	0	0	1	0	0	0	4315	652	23	1	2049	1	DCC	18	50832035	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	97891	50832035	27245213	16600	24751											
MBD2	8932	broad.mit.edu	37	chr18	51715272	51715272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttcattcattcgttgtGggtctgatttcactttatta	8	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51715272	T	T	51715272	3	4	9	1	0	0	0	0	1	0	0	0	9435	1348	47	2	439	2	MBD2	18	51715272	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	883237	51715272	26361976	16601	24752											
POLI	11201	broad.mit.edu	37	chr18	51807103	51807103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagattgcagcagagatgcGggaagccatgtataatcagt	12	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51807103	T	T	51807103	3	4	9	1	0	0	0	0	1	0	0	0	12298	1116	39	1	644	1	POLI	18	51807103	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91831	51807103	26270145	16602	24753											
C18orf54	162681	broad.mit.edu	37	chr18	51892104	51892104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagcaaatctcctgttccCgttaactctgatgatagtcc	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51892104	A	A	51892104	2	1	9	1	0	0	0	0	0	0	0	1	1922	639	23	1		1	C18orf54	18	51892104	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	85001	51892104	26185144	16603	24754											
TCF4	6925	broad.mit.edu	37	chr18	52928750	52928750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagctgccggctgcccCgcttcctctatttgctgcaa	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52928750	A	A	52928750	3	1	9	1	0	0	0	0	1	0	0	0	15817	652	23	1	1110	1	TCF4	18	52928750	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1036646	52928750	25148498	16604	24755											
TCF4	6925	broad.mit.edu	37	chr18	53018135	53018135	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgaagaggcctccttcGgggattattgctagaatact	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53018135	T	T	53018135	2	4	9	1	0	0	0	0	0	0	0	1	15817	1124	39	1		1	TCF4	18	53018135	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	89385	53018135	25059113	16605	24756											
TCF4	6925	broad.mit.edu	37	chr18	53018222	53018222	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatatccatgtcacctcCaaggagactctgctaaaagg	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53018222	A	A	53018222	4	1	9	1	0	0	0	0	0	1	0	0	15817	603	21	2	1685	2	TCF4	18	53018222	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87	53018222	25059026	16606	24757											
TCF4	6925	broad.mit.edu	37	chr18	53070697	53070697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttacctggtggcaaccCtgtaagtttgattctctccc	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53070697	A	A	53070697	3	1	9	1	0	0	0	0	1	0	0	0	15817	680	24	2	1714	2	TCF4	18	53070697	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52475	53070697	25006551	16607	24758											
TCF4	6925	broad.mit.edu	37	chr18	53131338	53131338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatgtcctccattccccCaggaccctgagctacttctg	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53131338	A	A	53131338	3	1	9	1	0	0	0	0	1	0	0	0	15817	595	21	2	1903	2	TCF4	18	53131338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60641	53131338	24945910	16608	24759											
TCF4	6925	broad.mit.edu	37	chr18	53252559	53252559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagttggtccatttttccCactgctcacaggaggtgaaa	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53252559	A	A	53252559	3	1	9	1	0	0	0	0	1	0	0	0	15817	594	21	2	1986	2	TCF4	18	53252559	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	121221	53252559	24824689	16609	24760											
WDR7	23335	broad.mit.edu	37	chr18	54353209	54353209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacagtggtagcactctcGgtgactggcatcctgaaggt	13	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54353209	T	T	54353209	2	4	9	1	0	0	0	0	0	0	0	1	17447	1103	39	1		1	WDR7	18	54353209	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1100650	54353209	23724039	16610	24761											
WDR7	23335	broad.mit.edu	37	chr18	54362446	54362446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtatactgaagagctcCgtatgtctaaagtgttttga	11	5	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54362446	A	A	54362446	1	1	9	0	1	0	0	0	0	0	0	0	17447	667	23	1		1	WDR7	18	54362446	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9237	54362446	23714802	16611	24762											
WDR7	23335	broad.mit.edu	37	chr18	54444037	54444037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacctgtcgtttccgctcGgtctgatgctgatcactctg	10	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54444037	T	T	54444037	3	4	9	1	0	0	0	0	1	0	0	0	17447	1116	39	1	2935	1	WDR7	18	54444037	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81591	54444037	23633211	16612	24763											
WDR7	23335	broad.mit.edu	37	chr18	54446754	54446754	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttctggagatgctggccCgaagatggcaagatcgatgc	13	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54446754	A	A	54446754	2	1	9	1	0	0	0	0	0	0	0	1	17447	644	23	1		1	WDR7	18	54446754	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2717	54446754	23630494	16613	24764											
WDR7	23335	broad.mit.edu	37	chr18	54591354	54591354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagtatgtgtggattcCggttaatttaatttgtcact	9	6	1	0	rs73958708	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54591354	A	A	54591354	1	1	9	0	1	0	0	0	0	0	0	0	17447	667	23	1		1	WDR7	18	54591354	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	144600	54591354	23485894	16614	24765											
FECH	2235	broad.mit.edu	37	chr18	55247497	55247497	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttcttctgaagaggtcctCagagcataattcctgacttt	7	9	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55247497	A	A	55247497	1	1	9	0	1	0	0	0	0	0	0	0	5865	841	29	3		3	FECH	18	55247497	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	656143	55247497	22829751	16615	24766											
NARS	4677	broad.mit.edu	37	chr18	55273737	55273737	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagtcttcaaaataattagTcacttatttcagctcaccaa	3	10	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55273737	A	A	55273737	1	1	9	0	1	0	0	0	0	0	0	0	10264	1682	58	5		5	NARS	18	55273737	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	26240	55273737	22803511	16616	24767											
NARS	4677	broad.mit.edu	37	chr18	55273849	55273849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccataaacactgcacctaccGggttgagctcatgcactatg	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55273849	T	T	55273849	3	4	9	1	0	0	0	0	1	0	0	0	10264	1130	39	1	530	1	NARS	18	55273849	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	112	55273849	22803399	16617	24768											
ATP8B1	5205	broad.mit.edu	37	chr18	55319928	55319928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcccactatgtataaccCagggaatcggaggctcagtt	10	10	1	0	rs144067642		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55319928	A	A	55319928	3	1	9	1	0	0	0	0	1	0	0	0	1198	594	21	2	722	2	ATP8B1	18	55319928	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46079	55319928	22757320	16618	24769											
ATP8B1	5205	broad.mit.edu	37	chr18	55355592	55355592	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattttgtgtgagtgtcccCgtcttatcagagaagatata	9	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55355592	A	A	55355592	2	1	9	1	0	0	0	0	0	0	0	1	1198	639	23	1		1	ATP8B1	18	55355592	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35664	55355592	22721656	16619	24770											
ALPK2	115701	broad.mit.edu	37	chr18	56171336	56171336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctccactgtagcatacGggatattgttctcaggccga	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56171336	T	T	56171336	3	4	9	1	0	0	0	0	1	0	0	0	545	1116	39	1	450	1	ALPK2	18	56171336	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	815744	56171336	21905912	16620	24771											
ALPK2	115701	broad.mit.edu	37	chr18	56191126	56191126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagatgtccattgtgaacGggcaggggccagtggttttt	14	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56191126	T	T	56191126	1	4	9	0	1	0	0	0	0	0	0	0	545	1131	39	1		1	ALPK2	18	56191126	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19790	56191126	21886122	16621	24772											
ALPK2	115701	broad.mit.edu	37	chr18	56202339	56202339	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggcgatttgcctgctcGggcttccagggacttctctc	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56202339	T	T	56202339	2	4	9	1	0	0	0	0	0	0	0	1	545	1124	39	1		1	ALPK2	18	56202339	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	11213	56202339	21874909	16622	24773											
ALPK2	115701	broad.mit.edu	37	chr18	56246709	56246709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccatcctggtgaggtccCaaaatgagagtcatccctgt	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56246709	A	A	56246709	3	1	9	1	0	0	0	0	1	0	0	0	545	593	21	2	5253	2	ALPK2	18	56246709	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44370	56246709	21830539	16623	24774											
ALPK2	115701	broad.mit.edu	37	chr18	56247216	56247216	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatgtatttctgtactttGggattttgctgactagagcg	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56247216	T	T	56247216	2	4	9	1	0	0	0	0	0	0	0	1	545	1335	47	2		2	ALPK2	18	56247216	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	507	56247216	21830032	16624	24775											
ALPK2	115701	broad.mit.edu	37	chr18	56247488	56247488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagattgcccaatgactggaGggagagtgaatggttggatt	15	4	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56247488	T	T	56247488	3	4	9	1	0	0	0	0	1	0	0	0	545	1000	35	2	6032	2	ALPK2	18	56247488	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	272	56247488	21829760	16625	24776											
ALPK2	115701	broad.mit.edu	37	chr18	56247543	56247543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgacctgggagtgccCggggagatgctttcttcttc	13	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247543	A	A	56247543	2	1	9	1	0	0	0	0	0	0	0	1	545	639	23	1		1	ALPK2	18	56247543	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55	56247543	21829705	16626	24777											
MALT1	10892	broad.mit.edu	37	chr18	56363667	56363667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtgaaactgtgttgccGggcaactggacatccttttg	12	8	0	1	rs147414021	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56363667	T	T	56363667	3	4	9	1	0	0	0	0	1	0	0	0	9294	1116	39	1	456	1	MALT1	18	56363667	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	116124	56363667	21713581	16627	24778											
ZNF532	55205	broad.mit.edu	37	chr18	56586486	56586486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcccagaatctcatcgacGggaccaaaaaaccatccctg	6	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56586486	T	T	56586486	3	4	9	1	0	0	0	0	1	0	0	0	18099	1116	39	1	969	1	ZNF532	18	56586486	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	222819	56586486	21490762	16628	24779											
ZNF532	55205	broad.mit.edu	37	chr18	56601882	56601882	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttatgtgcaagtaaaactCgttcacttacaaccgcacag	6	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56601882	A	A	56601882	1	1	9	0	1	0	0	0	0	0	0	0	18099	899	31	3		3	ZNF532	18	56601882	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15396	56601882	21475366	16629	24780											
SEC11C	90701	broad.mit.edu	37	chr18	56819811	56819811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaggagacctcctgttcCtcacaaatttccgggaagac	9	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56819811	A	A	56819811	3	1	9	1	0	0	0	0	1	0	0	0	14092	681	24	2	251	2	SEC11C	18	56819811	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	217929	56819811	21257437	16630	24781											
CPLX4	339302	broad.mit.edu	37	chr18	56985503	56985503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttcctttgctttttaaGggaaatgaaatagcatgtac	8	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56985503	T	T	56985503	1	4	9	0	1	0	0	0	0	0	0	0	3839	1015	35	2		2	CPLX4	18	56985503	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	165692	56985503	21091745	16631	24782											
LMAN1	3998	broad.mit.edu	37	chr18	57013411	57013411	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggttaacataaaaatgtattCcttctttacttaaacgatag	5	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57013411	T	T	57013411	1	4	9	0	1	0	0	0	0	0	0	0	8910	870	30	4		4	LMAN1	18	57013411	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	27908	57013411	21063837	16632	24783											
CCBE1	147372	broad.mit.edu	37	chr18	57136743	57136743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcttccggtgtctctccCggtcatatcggtatcccgga	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57136743	A	A	57136743	3	1	9	1	0	0	0	0	1	0	0	0	2757	652	23	1	890	1	CCBE1	18	57136743	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123332	57136743	20940505	16633	24784											
CDH20	28316	broad.mit.edu	37	chr18	59174656	59174656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaattagctccactgtcGggagagtgtttgccaaggac	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59174656	T	T	59174656	3	4	9	1	0	0	0	0	1	0	0	0	3136	1116	39	1	898	1	CDH20	18	59174656	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2037913	59174656	18902592	16634	24785											
CDH20	28316	broad.mit.edu	37	chr18	59203689	59203689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgctgtcatatgcttaccCaaatgcaaatgatgtacgta	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59203689	A	A	59203689	1	1	9	0	1	0	0	0	0	0	0	0	3136	609	21	2		2	CDH20	18	59203689	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29033	59203689	18873559	16635	24786											
CDH20	28316	broad.mit.edu	37	chr18	59203752	59203752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgatagaagcagtgaccCtggaagatttttctatgttg	10	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59203752	A	A	59203752	3	1	9	1	0	0	0	0	1	0	0	0	3136	681	24	2	1324	2	CDH20	18	59203752	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	63	59203752	18873496	16636	24787											
CDH20	28316	broad.mit.edu	37	chr18	59203790	59203790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacattacaacaggtgccCtaatgacagcaagaccccta	7	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59203790	A	A	59203790	3	1	9	1	0	0	0	0	1	0	0	0	3136	680	24	2	1362	2	CDH20	18	59203790	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	59203790	18873458	16637	24788											
KIAA1468	57614	broad.mit.edu	37	chr18	59947633	59947633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcgttagttgacaagcGggttgctccggcccttgtta	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59947633	T	T	59947633	3	4	9	1	0	0	0	0	1	0	0	0	8306	1116	39	1	3098	1	KIAA1468	18	59947633	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	743843	59947633	18129615	16638	24789											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60033895	60033895	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttaaaagaaaagaagtGggaaataataacttgaagtc	8	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60033895	T	T	60033895	1	4	9	0	1	0	0	0	0	0	0	0	16407	1363	47	2		2	TNFRSF11A	18	60033895	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	86262	60033895	18043353	16639	24790											
PHLPP1	23239	broad.mit.edu	37	chr18	60563128	60563128	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaatttactgacattccCgaagtattggagaaattgac	8	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60563128	A	A	60563128	2	1	9	1	0	0	0	0	0	0	0	1	11949	639	23	1		1	PHLPP1	18	60563128	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	529233	60563128	17514120	16640	24791											
PHLPP1	23239	broad.mit.edu	37	chr18	60625953	60625953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctagacctgactggaaaccCgcgccttgtccttgatcaca	9	14	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60625953	A	A	60625953	3	1	9	1	0	0	0	0	1	0	0	0	11949	652	23	1	3466	1	PHLPP1	18	60625953	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62825	60625953	17451295	16641	24792											
VPS4B	9525	broad.mit.edu	37	chr18	61077544	61077544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcatctgctggactcGgctgtccttctttcactggc	8	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61077544	T	T	61077544	3	4	9	1	0	0	0	0	1	0	0	0	17340	1116	39	1	1095	1	VPS4B	18	61077544	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	451591	61077544	16999704	16642	24793											
SERPINB12	89777	broad.mit.edu	37	chr18	61223524	61223524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttggtatggtacgcttGggtgctagaagtgacagtgc	15	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61223524	T	T	61223524	3	4	9	1	0	0	0	0	1	0	0	0	14212	1339	47	2	134	2	SERPINB12	18	61223524	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	145980	61223524	16853724	16643	24794											
SERPINB13	5275	broad.mit.edu	37	chr18	61264280	61264280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgaatctgcacttgcccCggtttgaggtggaggacggt	16	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61264280	A	A	61264280	2	1	9	1	0	0	0	0	0	0	0	1	14213	643	23	1		1	SERPINB13	18	61264280	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40756	61264280	16812968	16644	24795											
SERPINB3	6317	broad.mit.edu	37	chr18	61322895	61322895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagactaattgcatctacGgggatgagaatctgccatag	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61322895	T	T	61322895	3	4	9	1	0	0	0	0	1	0	0	0	14215	1116	39	1	7	1	SERPINB3	18	61322895	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58615	61322895	16754353	16645	24796											
SERPINB11	89778	broad.mit.edu	37	chr18	61379832	61379832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaattcattccgagtttGgtgtctaattctctcaaatc	7	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61379832	T	T	61379832	3	4	9	1	0	0	0	0	1	0	0	0	14211	1348	47	2	272	2	SERPINB11	18	61379832	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	56937	61379832	16697416	16646	24797											
SERPINB2	5055	broad.mit.edu	37	chr18	61562567	61562567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagaactttaccagctgtGggttcatgcagcagatccag	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61562567	T	T	61562567	3	4	9	1	0	0	0	0	1	0	0	0	14214	1348	47	2	244	2	SERPINB2	18	61562567	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	182735	61562567	16514681	16647	24798											
SERPINB10	5273	broad.mit.edu	37	chr18	61600359	61600359	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagaaaagccaaaagcagtGggccttcaactctactacaa	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61600359	T	T	61600359	2	4	9	1	0	0	0	0	0	0	0	1	14210	1335	47	2		2	SERPINB10	18	61600359	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37792	61600359	16476889	16648	24799											
CDH7	1005	broad.mit.edu	37	chr18	63476972	63476972	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgataaaggagatggttcCatcaaatacatcttgtcagg	10	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63476972	A	A	63476972	2	1	9	1	0	0	0	0	0	0	0	1	3145	581	21	2		2	CDH7	18	63476972	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1876613	63476972	14600276	16649	24800											
CDH19	28513	broad.mit.edu	37	chr18	64239308	64239308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaattggttccacaccCagccacgcttcactctcaaa	4	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64239308	A	A	64239308	3	1	9	1	0	0	0	0	1	0	0	0	3134	595	21	2	2228	2	CDH19	18	64239308	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	762336	64239308	13837940	16650	24801											
DSEL	92126	broad.mit.edu	37	chr18	65178651	65178651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatttgcctttacctccCtctattttaaacaattttgc	2	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65178651	A	A	65178651	3	1	9	1	0	0	0	0	1	0	0	0	4815	680	24	2	447	2	DSEL	18	65178651	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	939343	65178651	12898597	16651	24802											
DSEL	92126	broad.mit.edu	37	chr18	65180988	65180988	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaacatactgtgtgacGgatttagctgtgtagcttcc	10	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65180988	T	T	65180988	2	4	9	1	0	0	0	0	0	0	0	1	4815	1103	39	1		1	DSEL	18	65180988	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2337	65180988	12896260	16652	24803											
TMX3	54495	broad.mit.edu	37	chr18	66350218	66350218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggccaaactgaaaatcCctaaccaccaccaaccaaaa	4	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66350218	A	A	66350218	3	1	9	1	0	0	0	0	1	0	0	0	16391	637	22	2	531	2	TMX3	18	66350218	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1169230	66350218	11727030	16653	24804											
CCDC102B	79839	broad.mit.edu	37	chr18	66506185	66506185	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagtgctaatcattgtctcCcttaaccaagtctaagtttc	5	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66506185	G	G	66506185	1	3	9	0	1	0	0	0	0	0	0	0	2763	638	22	4		4	CCDC102B	18	66506185	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	155967	66506185	11571063	16654	24805											
DOK6	220164	broad.mit.edu	37	chr18	67406183	67406183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagacccatctctttccCtatctctattctcacagaat	4	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67406183	A	A	67406183	1	1	9	0	1	0	0	0	0	0	0	0	4741	696	24	2		2	DOK6	18	67406183	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	899998	67406183	10671065	16655	24806											
CD226	10666	broad.mit.edu	37	chr18	67563013	67563013	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtagcagcggtaaagcccCgagtctgagactgtgacatc	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67563013	A	A	67563013	2	1	9	1	0	0	0	0	0	0	0	1	3016	639	23	1		1	CD226	18	67563013	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	156830	67563013	10514235	16656	24807											
CD226	10666	broad.mit.edu	37	chr18	67614065	67614065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatcttcagaggcattcCgaaagaaaagagtcatgtta	8	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67614065	A	A	67614065	3	1	9	1	0	0	0	0	1	0	0	0	3016	652	23	1	743	1	CD226	18	67614065	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51052	67614065	10463183	16657	24808											
RTTN	25914	broad.mit.edu	37	chr18	67687923	67687923	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaaccatctgctgaacCgtggtgttctccagtggcat	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67687923	A	A	67687923	2	1	9	1	0	0	0	0	0	0	0	1	13848	639	23	1		1	RTTN	18	67687923	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	73858	67687923	10389325	16658	24809											
RTTN	25914	broad.mit.edu	37	chr18	67817853	67817853	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgtcatacctcactttcGggctcttgaatgccaaatac	6	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67817853	T	T	67817853	2	4	9	1	0	0	0	0	0	0	0	1	13848	1103	39	1		1	RTTN	18	67817853	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	129930	67817853	10259395	16659	24810											
RTTN	25914	broad.mit.edu	37	chr18	67843911	67843911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcattgcctgccttacCttttcaacagggagaagcgt	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67843911	A	A	67843911	3	1	9	1	0	0	0	0	1	0	0	0	13848	695	24	2	5360	2	RTTN	18	67843911	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26058	67843911	10233337	16660	24811											
CBLN2	147381	broad.mit.edu	37	chr18	70209161	70209161	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagatgcctagggaggaggTgacggcgccgtccgccgacg	19	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70209161	A	A	70209161	3	1	9	1	0	0	0	0	1	0	0	0	2731	1696	59	5	451	5	CBLN2	18	70209161	Missense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	2365250	70209161	7868087	16661	24812											
NETO1	81832	broad.mit.edu	37	chr18	70461331	70461331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacgtcagctgtcaagtgtGggtttcatcttaagactgac	10	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70461331	T	T	70461331	1	4	9	0	1	0	0	0	0	0	0	0	10434	1363	47	2		2	NETO1	18	70461331	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	252170	70461331	7615917	16662	24813											
NETO1	81832	broad.mit.edu	37	chr18	70461371	70461371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttggaccgtggaggtgctCggatgtaccacttgcaatca	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70461371	A	A	70461371	3	1	9	1	0	0	0	0	1	0	0	0	10434	884	31	3	1001	3	NETO1	18	70461371	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40	70461371	7615877	16663	24814											
NETO1	81832	broad.mit.edu	37	chr18	70461515	70461515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaacaaacacacaaaaacGgagcttgaataataaaccaa	4	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70461515	T	T	70461515	1	4	9	0	1	0	0	0	0	0	0	0	10434	1131	39	1		1	NETO1	18	70461515	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	144	70461515	7615733	16664	24815											
C18orf55	29090	broad.mit.edu	37	chr18	71816025	71816025	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttagcatcgtccctaagcGgaacgattttccgtgaacat	9	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71816025	T	T	71816025	1	4	9	0	1	0	0	0	0	0	0	0	1923	1131	39	1		1	C18orf55	18	71816025	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1354510	71816025	6261223	16665	24816											
C18orf55	29090	broad.mit.edu	37	chr18	71816330	71816330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagggggaaccgccgtccCaacatcacaaaaaggtaaaa	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71816330	A	A	71816330	3	1	9	1	0	0	0	0	1	0	0	0	1923	594	21	2	289	2	C18orf55	18	71816330	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	305	71816330	6260918	16666	24817											
CYB5A	1528	broad.mit.edu	37	chr18	71959071	71959071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttctgaatctcctctaGggtgtagtacttcacggcct	10	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71959071	T	T	71959071	3	4	9	1	0	0	0	0	1	0	0	0	4155	991	35	2	397	2	CYB5A	18	71959071	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	142741	71959071	6118177	16667	24818											
CNDP1	84735	broad.mit.edu	37	chr18	72226609	72226609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actctgtccagcctgtgcctCgcttcagacaagagctcttc	8	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72226609	A	A	72226609	3	1	9	1	0	0	0	0	1	0	0	0	3625	884	31	3	215	3	CNDP1	18	72226609	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	267538	72226609	5850639	16668	24819											
ZNF407	55628	broad.mit.edu	37	chr18	72343783	72343783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttggcaaaacacatctcCgtcgtcagaatctggctgct	8	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72343783	A	A	72343783	3	1	9	1	0	0	0	0	1	0	0	0	18014	652	23	1	810	1	ZNF407	18	72343783	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117174	72343783	5733465	16669	24820											
ZNF407	55628	broad.mit.edu	37	chr18	72344611	72344611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggacagatttggaaatcCatgtgaaaaggtgccatgcc	11	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72344611	A	A	72344611	3	1	9	1	0	0	0	0	1	0	0	0	18014	594	21	2	1638	2	ZNF407	18	72344611	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	828	72344611	5732637	16670	24821											
ZNF407	55628	broad.mit.edu	37	chr18	72344737	72344737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcaaactgcttctgtcCtgagttgtcagtgttgttca	9	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72344737	A	A	72344737	3	1	9	1	0	0	0	0	1	0	0	0	18014	680	24	2	1764	2	ZNF407	18	72344737	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	126	72344737	5732511	16671	24822											
ZNF407	55628	broad.mit.edu	37	chr18	72589228	72589228	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccacatgaaactccacacGggagaaaagccgtttaaatg	8	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72589228	T	T	72589228	2	4	9	1	0	0	0	0	0	0	0	1	18014	1103	39	1		1	ZNF407	18	72589228	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	244491	72589228	5488020	16672	24823											
ZADH2	284273	broad.mit.edu	37	chr18	72913950	72913950	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcatggcaaactggccCgttcccccagctgctgctgt	11	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72913950	A	A	72913950	2	1	9	1	0	0	0	0	0	0	0	1	17638	639	23	1		1	ZADH2	18	72913950	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	324722	72913950	5163298	16673	24824			20	23	50106550	5	4	112	N	G_C	4.14861e-05
ZADH2	284273	broad.mit.edu	37	chr18	72913988	72913988	+	Missense_Mutation	SNP	C	A	A													tgtcaccaaaacttttttccCttccgacagtcctccgagct							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72913988	A	A	72913988	3	1	9	1	0	0	0	0	1	0	0	0	17638	681	24	2	620	2	ZADH2	18	72913988	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38	72913988	5163260	16674	24825	165	2	20	23	50106550	5	4	112	N	G_C	4.14861e-05
ZADH2	284273	broad.mit.edu	37	chr18	72913992	72913992	+	Silent	SNP	C	A	A													accaaaacttttttcccttcCgacagtcctccgagctcttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72913992	A	A	72913992	2	1	9	1	0	0	0	0	0	0	0	1	17638	639	23	1		1	ZADH2	18	72913992	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4	72913992	5163256	16675	24826	165	2	20	23	50106550	5	4	112	N	G_C	4.14861e-05
ZADH2	284273	broad.mit.edu	37	chr18	72914028	72914028	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcaggctgatgtatgcGgtggtgccacttaccagcag	12	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72914028	T	T	72914028	2	4	9	1	0	0	0	0	0	0	0	1	17638	1103	39	1		1	ZADH2	18	72914028	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36	72914028	5163220	16676	24827			20	23	50106550	5	4	112	N	G_C	4.14861e-05
ZADH2	284273	broad.mit.edu	37	chr18	72914061	72914061	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcagggtaagatactcGggtttcactgagggcactgg	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72914061	T	T	72914061	2	4	9	1	0	0	0	0	0	0	0	1	17638	1103	39	1		1	ZADH2	18	72914061	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	33	72914061	5163187	16677	24828			20	23	50106550	5	4	112	N	G_C	4.14861e-05
TSHZ1	10194	broad.mit.edu	37	chr18	72998823	72998823	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcatcaaaaagcagccCgactctcccgcggggtccac	9	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72998823	A	A	72998823	2	1	9	1	0	0	0	0	0	0	0	1	16748	639	23	1		1	TSHZ1	18	72998823	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84762	72998823	5078425	16678	24829											
TSHZ1	10194	broad.mit.edu	37	chr18	73000554	73000554	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacccacggcaagtctccCgaggaccacctgatctatgt	9	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73000554	A	A	73000554	2	1	9	1	0	0	0	0	0	0	0	1	16748	639	23	1		1	TSHZ1	18	73000554	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1731	73000554	5076694	16679	24830											
ZNF236	7776	broad.mit.edu	37	chr18	74611052	74611052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagactcacattgcttccCactttaaacatacggaatta	6	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74611052	A	A	74611052	3	1	9	1	0	0	0	0	1	0	0	0	17915	594	21	2	1804	2	ZNF236	18	74611052	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1610498	74611052	3466196	16680	24831											
ZNF236	7776	broad.mit.edu	37	chr18	74620218	74620218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctttcactgtagtatccCaggcaagtaacctttgacag	7	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74620218	A	A	74620218	1	1	9	0	1	0	0	0	0	0	0	0	17915	609	21	2		2	ZNF236	18	74620218	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9166	74620218	3457030	16681	24832											
ZNF236	7776	broad.mit.edu	37	chr18	74620289	74620289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaagatatgagcttgccCagcagctccaacagcatcag	9	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74620289	A	A	74620289	3	1	9	1	0	0	0	0	1	0	0	0	17915	595	21	2	2359	2	ZNF236	18	74620289	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	71	74620289	3456959	16682	24833											
ZNF236	7776	broad.mit.edu	37	chr18	74627708	74627708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaagccttataagtgtcCgttttgtgaggagggtttcc	12	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74627708	A	A	74627708	3	1	9	1	0	0	0	0	1	0	0	0	17915	652	23	1	3235	1	ZNF236	18	74627708	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7419	74627708	3449540	16683	24834											
MBP	4155	broad.mit.edu	37	chr18	74692427	74692427	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcgactatctcttcctcCctgaaaaggaagagagagga	11	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74692427	A	A	74692427	4	1	9	1	0	0	0	0	0	1	0	0	9452	637	22	2	47	2	MBP	18	74692427	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64719	74692427	3384821	16684	24835											
ATP9B	374868	broad.mit.edu	37	chr18	77037152	77037152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcggaccagcactatccCagaggaacttgggcgcctgg	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77037152	A	A	77037152	3	1	9	1	0	0	0	0	1	0	0	0	1203	594	21	2	1417	2	ATP9B	18	77037152	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2344725	77037152	1040096	16685	24836											
ATP9B	374868	broad.mit.edu	37	chr18	77108117	77108117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagttgtcttcgtctgtGggctctctctccaggctgtg	12	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77108117	T	T	77108117	1	4	9	0	1	0	0	0	0	0	0	0	1203	1363	47	2		2	ATP9B	18	77108117	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	70965	77108117	969131	16686	24837											
NFATC1	4772	broad.mit.edu	37	chr18	77170926	77170926	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccaagaccacggacccCgaggagggctttccccgcgg	12	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77170926	A	A	77170926	2	1	9	1	0	0	0	0	0	0	0	1	10456	639	23	1		1	NFATC1	18	77170926	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62809	77170926	906322	16687	24838											
NFATC1	4772	broad.mit.edu	37	chr18	77210990	77210990	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgaaactcagaaactcCgacattgaacttcggaaagg	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77210990	A	A	77210990	2	1	9	1	0	0	0	0	0	0	0	1	10456	639	23	1		1	NFATC1	18	77210990	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40064	77210990	866258	16688	24839											
CTDP1	9150	broad.mit.edu	37	chr18	77470394	77470394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaccgaatattatcaaGggatgaatgtattgacccat	7	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77470394	T	T	77470394	3	4	9	1	0	0	0	0	1	0	0	0	4036	1000	35	2	843	2	CTDP1	18	77470394	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	259404	77470394	606854	16689	24840											
CTDP1	9150	broad.mit.edu	37	chr18	77470425	77470425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgacccattttctaaaacGggaaaccttaggtatgtacc	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77470425	T	T	77470425	2	4	9	1	0	0	0	0	0	0	0	1	4036	1103	39	1		1	CTDP1	18	77470425	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	31	77470425	606823	16690	24841											
KCNG2	26251	broad.mit.edu	37	chr18	77659266	77659266	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagctcctggagcgcgcggGgctggtgctgcggctgctgc	18	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77659266	A	A	77659266	3	1	9	1	0	0	0	0	1	0	0	0	8098	1232	43	4	857	4	KCNG2	18	77659266	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	188841	77659266	417982	16691	24842											
PQLC1	80148	broad.mit.edu	37	chr18	77703520	77703520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccacttctcccagtccCgaacctgcagcgggagagac	10	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77703520	A	A	77703520	1	1	9	0	1	0	0	0	0	0	0	0	12519	667	23	1		1	PQLC1	18	77703520	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	44254	77703520	373728	16692	24843											
TXNL4A	10907	broad.mit.edu	37	chr18	77733744	77733744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaggccgcggcctttgcGggccccgcggtacaccgtct	13	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77733744	T	T	77733744	3	4	9	1	0	0	0	0	1	0	0	0	16931	1116	39	1	62	1	TXNL4A	18	77733744	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30224	77733744	343504	16693	24844											
TXNL4A	10907	broad.mit.edu	37	chr18	77733832	77733832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgttgttgccagtcccCaagtcaatcatgatgtgctt	9	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77733832	A	A	77733832	3	1	9	1	0	0	0	0	1	0	0	0	16931	593	21	2	150	2	TXNL4A	18	77733832	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	88	77733832	343416	16694	24845											
C18orf22	79863	broad.mit.edu	37	chr18	77802111	77802111	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcacggcacagctgtgaGggtctgtgcgttctgtctcc	14	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77802111	T	T	77802111	1	4	9	0	1	0	0	0	0	0	0	0	1916	1015	35	2		2	C18orf22	18	77802111	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	68279	77802111	275137	16695	24846											
ADNP2	22850	broad.mit.edu	37	chr18	77895806	77895806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagaagcttggggagcGggaagtctacttggcaatcc	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77895806	T	T	77895806	3	4	9	1	0	0	0	0	1	0	0	0	324	1116	39	1	2520	1	ADNP2	18	77895806	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	93695	77895806	181442	16696	24847											
ADNP2	22850	broad.mit.edu	37	chr18	77896029	77896029	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacggtcctgaagtctccCgccttcaagtgcatccactg	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77896029	A	A	77896029	2	1	9	1	0	0	0	0	0	0	0	1	324	639	23	1		1	ADNP2	18	77896029	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	223	77896029	181219	16697	24848											
OR4F17	81099	broad.mit.edu	37	chr19	110630	110630	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctcttcttcaaggtaacTgcagaggctatttcctggaa	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110630	A	A	110630	1	1	9	0	1	0	0	0	0	0	0	0	11156	1595	55	5		5	OR4F17	19	110630	5'Flank	SNP	T	TCGA-05-4396-01A-21D-1855-08		110630	59018353	16698	24849											
POLRMT	5442	broad.mit.edu	37	chr19	629449	629449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaggacttgaacctGggggctaagagagaaaagtc	12	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	629449	T	T	629449	1	4	9	0	1	0	0	0	0	0	0	0	12333	1363	47	2		2	POLRMT	19	629449	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	518819	629449	58499534	16699	24850											
POLRMT	5442	broad.mit.edu	37	chr19	630224	630224	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctccccattcgagcaccCgtctctctggaccctgagcc	7	21	2	1	rs149117391	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	630224	G	G	630224	1	3	9	0	1	0	0	0	0	0	0	0	12333	667	23	4		4	POLRMT	19	630224	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	775	630224	58498759	16700	24851											
PTBP1	5725	broad.mit.edu	37	chr19	803668	803668	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actcggcccagggcaagaccCgtgggtgtctttccctggaa	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	803668	G	G	803668	1	3	9	0	1	0	0	0	0	0	0	0	12831	667	23	4		4	PTBP1	19	803668	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	173444	803668	58325315	16701	24852											
WDR18	57418	broad.mit.edu	37	chr19	989771	989771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctcacaggtctccaccGggaaccttctggtcatcctg	9	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	989771	T	T	989771	3	4	9	1	0	0	0	0	1	0	0	0	17405	1116	39	1	341	1	WDR18	19	989771	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	186103	989771	58139212	16702	24853											
ABCA7	10347	broad.mit.edu	37	chr19	1049181	1049181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccggcccagcaggtccCggattccacagcccagctct	11	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1049181	A	A	1049181	1	1	9	0	1	0	0	0	0	0	0	0	37	667	23	1		1	ABCA7	19	1049181	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	59410	1049181	58079802	16703	24854											
CIRBP	1153	broad.mit.edu	37	chr19	1270871	1270871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacataaaataggaagcGgggagaggtggtgagagatg	16	2	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1270871	T	T	1270871	1	4	9	0	1	0	0	0	0	0	0	0	3464	1131	39	1		1	CIRBP	19	1270871	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	221690	1270871	57858112	16704	24855											
CIRBP	1153	broad.mit.edu	37	chr19	1270913	1270913	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgttgaggatttcattGgtgtctgccacaggccgcca	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1270913	T	T	1270913	1	4	9	0	1	0	0	0	0	0	0	0	3464	1363	47	2		2	CIRBP	19	1270913	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	42	1270913	57858070	16705	24856											
APC2	10297	broad.mit.edu	37	chr19	1460246	1460246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaagatgacccgggaccCgctgaacctggcgctgcgcc	13	16	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1460246	A	A	1460246	3	1	9	1	0	0	0	0	1	0	0	0	766	652	23	1	1408	1	APC2	19	1460246	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	189333	1460246	57668737	16706	24857											
AP3D1	8943	broad.mit.edu	37	chr19	2121024	2121024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggccacgtccagcatttGggcggcgatgaggtggccgt	17	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2121024	T	T	2121024	3	4	9	1	0	0	0	0	1	0	0	0	748	1357	47	2	2369	2	AP3D1	19	2121024	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	660778	2121024	57007959	16707	24858											
TMPRSS9	360200	broad.mit.edu	37	chr19	2402076	2402076	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacagaggtttcctaagactCatttcaaggaagtgaaggaa	11	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2402076	A	A	2402076	1	1	9	0	1	0	0	0	0	0	0	0	16376	841	29	3		3	TMPRSS9	19	2402076	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	281052	2402076	56726907	16708	24859											
CELF5	60680	broad.mit.edu	37	chr19	3250889	3250889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctgtggatggaagcttGggttgcttccacctagtggc	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3250889	T	T	3250889	1	4	9	0	1	0	0	0	0	0	0	0	3249	1363	47	2		2	CELF5	19	3250889	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	848813	3250889	55878094	16709	24860											
C19orf28	126321	broad.mit.edu	37	chr19	3546072	3546072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgaacagcggcactcacGggcaagggtgcaggctctgg	16	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3546072	T	T	3546072	3	4	9	1	0	0	0	0	1	0	0	0	1936	1130	39	1	372	1	C19orf28	19	3546072	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	295183	3546072	55582911	16710	24861											
TJP3	27134	broad.mit.edu	37	chr19	3733757	3733757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtccctttcagatcaacGgggtgtctagccagaacctg	11	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3733757	T	T	3733757	3	4	9	1	0	0	0	0	1	0	0	0	16054	1116	39	1	803	1	TJP3	19	3733757	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	187685	3733757	55395226	16711	24862											
EBI3	10148	broad.mit.edu	37	chr19	4234741	4234741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcagtgggagcctcccGggtcctggcccttcccagag	15	14	0	1	rs146752662		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4234741	T	T	4234741	3	4	9	1	0	0	0	0	1	0	0	0	4923	1116	39	1	471	1	EBI3	19	4234741	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	500984	4234741	54894242	16712	24863											
TMIGD2	126259	broad.mit.edu	37	chr19	4292845	4292845	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactcttctttggggccccCcggggccggtataggacgtt	13	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4292845	A	A	4292845	2	1	9	1	0	0	0	0	0	0	0	1	16354	610	22	2		2	TMIGD2	19	4292845	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	58104	4292845	54836138	16713	24864											
CHAF1A	10036	broad.mit.edu	37	chr19	4408967	4408967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgacatgtcagacgatcaGggtacttctgtgcaaagtaa	11	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4408967	T	T	4408967	3	4	9	1	0	0	0	0	1	0	0	0	3342	991	35	2	181	2	CHAF1A	19	4408967	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	116122	4408967	54720016	16714	24865											
CHAF1A	10036	broad.mit.edu	37	chr19	4409076	4409076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaccgaaacttgtcaacGggaagggtcccttagataac	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4409076	T	T	4409076	3	4	9	1	0	0	0	0	1	0	0	0	3342	1116	39	1	290	1	CHAF1A	19	4409076	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109	4409076	54719907	16715	24866											
CHAF1A	10036	broad.mit.edu	37	chr19	4430563	4430563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatgatgatgacgacatGggagaggatgaagatgagga	18	2	0	7			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4430563	T	T	4430563	3	4	9	1	0	0	0	0	1	0	0	0	3342	1348	47	2	1914	2	CHAF1A	19	4430563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21487	4430563	54698420	16716	24867											
UBXN6	80700	broad.mit.edu	37	chr19	4445528	4445528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatggctgacaggagctcGggtttcaggatggagtccgg	17	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4445528	T	T	4445528	2	4	9	1	0	0	0	0	0	0	0	1	17043	1103	39	1		1	UBXN6	19	4445528	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	14965	4445528	54683455	16717	24868											
UBXN6	80700	broad.mit.edu	37	chr19	4446169	4446169	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaacccgtacaccgccccCagccgctcccgagcgtagaa	9	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4446169	A	A	4446169	2	1	9	1	0	0	0	0	0	0	0	1	17043	581	21	2		2	UBXN6	19	4446169	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	641	4446169	54682814	16718	24869											
UBXN6	80700	broad.mit.edu	37	chr19	4454127	4454127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagtgagtgtatcctccCgaggtggccggcaaagctga	16	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4454127	A	A	4454127	1	1	9	0	1	0	0	0	0	0	0	0	17043	667	23	1		1	UBXN6	19	4454127	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7958	4454127	54674856	16719	24870											
PLIN4	729359	broad.mit.edu	37	chr19	4511908	4511908	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggtcagcacggtcttggcCgtgtctacacctgtctgggc	13	14	4	0	rs10423606	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4511908	A	A	4511908	2	1	9	1	0	0	0	0	0	0	0	1	12187	639	23	1		1	PLIN4	19	4511908	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57781	4511908	54617075	16720	24871											
TICAM1	148022	broad.mit.edu	37	chr19	4817220	4817220	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttatagaatttctgttcCgatgatgattccagggagga	11	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4817220	A	A	4817220	2	1	9	1	0	0	0	0	0	0	0	1	16015	639	23	1		1	TICAM1	19	4817220	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	305312	4817220	54311763	16721	24872											
ARRDC5	645432	broad.mit.edu	37	chr19	4902706	4902706	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgacgtaaccccttcccacGagctccaccttcactatggg	7	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4902706	T	T	4902706	2	4	9	1	0	0	0	0	0	0	0	1	990	1045	37	3		3	ARRDC5	19	4902706	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	85486	4902706	54226277	16722	24873											
SAFB2	9667	broad.mit.edu	37	chr19	5621405	5621405	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcccctcttctttaacCgcctattagggagagatgag	9	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5621405	G	G	5621405	2	3	9	1	0	0	0	0	0	0	0	1	13918	639	23	4		4	SAFB2	19	5621405	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	718699	5621405	53507578	16723	24874											
DUS3L	56931	broad.mit.edu	37	chr19	5787665	5787665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtccacctccacggtgcGgctcagcagctcggcacact	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5787665	T	T	5787665	3	4	9	1	0	0	0	0	1	0	0	0	4847	1116	39	1	837	1	DUS3L	19	5787665	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	166260	5787665	53341318	16724	24875											
RANBP3	8498	broad.mit.edu	37	chr19	5928030	5928030	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaggcttgctgtgtggcGgggtcttttttctcacaggc	13	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5928030	T	T	5928030	2	4	9	1	0	0	0	0	0	0	0	1	13137	1103	39	1		1	RANBP3	19	5928030	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	140365	5928030	53200953	16725	24876											
RANBP3	8498	broad.mit.edu	37	chr19	5928141	5928141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtaatcaaaaccagtgcCacacttggcccagacggatg	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5928141	A	A	5928141	1	1	9	0	1	0	0	0	0	0	0	0	13137	609	21	2		2	RANBP3	19	5928141	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	111	5928141	53200842	16726	24877											
MLLT1	4298	broad.mit.edu	37	chr19	6227099	6227099	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaccgtgtctgctccttcGggcattaccatcacctagtg	9	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6227099	T	T	6227099	2	4	9	1	0	0	0	0	0	0	0	1	9718	1103	39	1		1	MLLT1	19	6227099	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	298958	6227099	52901884	16727	24878											
TUBB4	10382	broad.mit.edu	37	chr19	6495277	6495277	+	Silent	SNP	G	T	T													aggtcattcatgttgctctcGgcctcggtgaactccatctc					rs138128036		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6495277	T	T	6495277	2	4	9	1	0	0	0	0	0	0	0	1	16884	1103	39	1		1	TUBB4	19	6495277	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	268178	6495277	52633706	16728	24879	166	2									
TUBB4	10382	broad.mit.edu	37	chr19	6495283	6495283	+	Silent	SNP	G	T	T													ttcatgttgctctcggcctcGgtgaactccatctcgtccat							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6495283	T	T	6495283	2	4	9	1	0	0	0	0	0	0	0	1	16884	1103	39	1		1	TUBB4	19	6495283	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6	6495283	52633700	16729	24880	166	2									
TUBB4	10382	broad.mit.edu	37	chr19	6495313	6495313	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcgtccatgccctcgccCgtgtaccagtgcaagaaggc	10	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6495313	A	A	6495313	2	1	9	1	0	0	0	0	0	0	0	1	16884	639	23	1		1	TUBB4	19	6495313	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	6495313	52633670	16730	24881											
TUBB4	10382	broad.mit.edu	37	chr19	6495440	6495440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcttcaggccgcggggcGggatgtcgcacacggccgtc	15	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6495440	T	T	6495440	3	4	9	1	0	0	0	0	1	0	0	0	16884	1116	39	1	268	1	TUBB4	19	6495440	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127	6495440	52633543	16731	24882											
C3	718	broad.mit.edu	37	chr19	6718135	6718135	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgaccgtccggcccacGggtagcagcttgtggttgac	13	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6718135	T	T	6718135	2	4	9	1	0	0	0	0	0	0	0	1	2226	1103	39	1		1	C3	19	6718135	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	222695	6718135	52410848	16732	24883											
SH2D3A	10045	broad.mit.edu	37	chr19	6755126	6755126	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggcactcggggcaccagctCgcagtacgtcgggggacgtt	17	12	0	0	rs143255377		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6755126	A	A	6755126	4	1	9	1	0	0	0	0	0	1	0	0	14346	893	31	3	1057	3	SH2D3A	19	6755126	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36991	6755126	52373857	16733	24884											
SH2D3A	10045	broad.mit.edu	37	chr19	6755289	6755289	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcaacaccgggtcactgctCgttcggggcaaggcagatat	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6755289	A	A	6755289	2	1	9	1	0	0	0	0	0	0	0	1	14346	871	31	3		3	SH2D3A	19	6755289	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	163	6755289	52373694	16734	24885											
VAV1	7409	broad.mit.edu	37	chr19	6829915	6829915	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgactcttcaggagacCgagacaacaagaaggtgggg	16	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6829915	A	A	6829915	2	1	9	1	0	0	0	0	0	0	0	1	17258	644	23	1		1	VAV1	19	6829915	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	74626	6829915	52299068	16735	24886											
EMR1	2015	broad.mit.edu	37	chr19	6926397	6926397	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggctgcgccatcatcgcGggcttcctgcactacctttt	10	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6926397	T	T	6926397	2	4	9	1	0	0	0	0	0	0	0	1	5146	1103	39	1		1	EMR1	19	6926397	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96482	6926397	52202586	16736	24887											
INSR	3643	broad.mit.edu	37	chr19	7122588	7122588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaaatcaaacctggcctGggtcgttatgttttcaaagc	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7122588	T	T	7122588	1	4	9	0	1	0	0	0	0	0	0	0	7843	1363	47	2		2	INSR	19	7122588	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	196191	7122588	52006395	16737	24888											
ARHGEF18	23370	broad.mit.edu	37	chr19	7521145	7521145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggaagtggcatccgcGggggtggccagcaagacctc	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7521145	T	T	7521145	1	4	9	0	1	0	0	0	0	0	0	0	903	1131	39	1		1	ARHGEF18	19	7521145	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	398557	7521145	51607838	16738	24889											
MCOLN1	57192	broad.mit.edu	37	chr19	7594580	7594580	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtggctggatcgtgctGgggccctatcatgtgaaggt	15	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7594580	T	T	7594580	2	4	9	1	0	0	0	0	0	0	0	1	9488	1335	47	2		2	MCOLN1	19	7594580	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	73435	7594580	51534403	16739	24890											
PNPLA6	10908	broad.mit.edu	37	chr19	7621382	7621382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttggacctcacgtaccCagtcacctccatgttcactg	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7621382	A	A	7621382	3	1	9	1	0	0	0	0	1	0	0	0	12264	594	21	2	3269	2	PNPLA6	19	7621382	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26802	7621382	51507601	16740	24891											
XAB2	56949	broad.mit.edu	37	chr19	7685451	7685451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgggggtcacagatctgGgagcagaagctgtagatggc	16	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7685451	T	T	7685451	2	4	9	1	0	0	0	0	0	0	0	1	17545	1219	43	2		2	XAB2	19	7685451	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	64069	7685451	51443532	16741	24892											
CD209	30835	broad.mit.edu	37	chr19	7806486	7806486	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatatgttcagtaccagtcGgaagaagaatgccaagcagc	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7806486	T	T	7806486	1	4	9	0	1	0	0	0	0	0	0	0	3014	1131	39	1		1	CD209	19	7806486	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	121035	7806486	51322497	16742	24893											
CD209	30835	broad.mit.edu	37	chr19	7808096	7808096	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctccccaacgttgttGggctctcctctgttccaata	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7808096	T	T	7808096	2	4	9	1	0	0	0	0	0	0	0	1	3014	1335	47	2		2	CD209	19	7808096	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1610	7808096	51320887	16743	24894											
LRRC8E	80131	broad.mit.edu	37	chr19	7963610	7963610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaacttatcagaggcccCgtgccagcaattgctgcctc	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7963610	A	A	7963610	3	1	9	1	0	0	0	0	1	0	0	0	9112	652	23	1	209	1	LRRC8E	19	7963610	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	155514	7963610	51165373	16744	24895											
LRRC8E	80131	broad.mit.edu	37	chr19	7963898	7963898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgactctccatggaccaccaGggccctatccgaggtatccg	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7963898	T	T	7963898	3	4	9	1	0	0	0	0	1	0	0	0	9112	1000	35	2	497	2	LRRC8E	19	7963898	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	288	7963898	51165085	16745	24896											
MAP2K7	5609	broad.mit.edu	37	chr19	7968796	7968796	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccggactgacgggcggcCgggcggtgcgcggcggcggt	22	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7968796	A	A	7968796	1	1	9	0	1	0	0	0	0	0	0	0	9334	667	23	1		1	MAP2K7	19	7968796	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	4898	7968796	51160187	16746	24897											
ELAVL1	1994	broad.mit.edu	37	chr19	8056648	8056648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgatcaaattcgttctccCgatgtcacccctgcagtctt	7	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8056648	A	A	8056648	3	1	9	1	0	0	0	0	1	0	0	0	5091	652	23	1	948	1	ELAVL1	19	8056648	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87852	8056648	51072335	16747	24898											
MUC16	94025	broad.mit.edu	37	chr19	8982303	8982303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcagaggaggtccaccCgtgtctcagcaccgttcttc	12	13	2	1	rs114920126	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8982303	A	A	8982303	3	1	9	1	0	0	0	0	1	0	0	0	10067	652	23	1	1611	1	MUC16	19	8982303	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	925655	8982303	50146680	16748	24899											
MUC16	94025	broad.mit.edu	37	chr19	8994484	8994484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacatgttctcctcatacCgcaggttagtgatggtgaag	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8994484	A	A	8994484	3	1	9	1	0	0	0	0	1	0	0	0	10067	652	23	1	2199	1	MUC16	19	8994484	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12181	8994484	50134499	16749	24900											
MUC16	94025	broad.mit.edu	37	chr19	9000463	9000463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccctgaaggactctctcCgtggtgttaaactttctaga	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9000463	A	A	9000463	2	1	9	1	0	0	0	0	0	0	0	1	10067	639	23	1		1	MUC16	19	9000463	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5979	9000463	50128520	16750	24901											
MUC16	94025	broad.mit.edu	37	chr19	9038403	9038403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggcaggggtccagtacCgacggttataacctgcagat	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9038403	A	A	9038403	3	1	9	1	0	0	0	0	1	0	0	0	10067	652	23	1	7719	1	MUC16	19	9038403	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37940	9038403	50090580	16751	24902											
MUC16	94025	broad.mit.edu	37	chr19	9049228	9049228	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagttgtacttgtctttgcCgccaaactggtgaccattga	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9049228	A	A	9049228	2	1	9	1	0	0	0	0	0	0	0	1	10067	639	23	1		1	MUC16	19	9049228	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10825	9049228	50079755	16752	24903											
MUC16	94025	broad.mit.edu	37	chr19	9060432	9060432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggaggtgctggtctccCttggtgtgggggtcagggtg	20	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9060432	A	A	9060432	3	1	9	1	0	0	0	0	1	0	0	0	10067	681	24	2	16837	2	MUC16	19	9060432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11204	9060432	50068551	16753	24904											
MUC16	94025	broad.mit.edu	37	chr19	9063714	9063714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgttgtggcccctaaaGgacttgtatgggtgttcatg	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9063714	T	T	9063714	3	4	9	1	0	0	0	0	1	0	0	0	10067	1000	35	2	20119	2	MUC16	19	9063714	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3282	9063714	50065269	16754	24905											
MUC16	94025	broad.mit.edu	37	chr19	9064125	9064125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggttgccacattggtcCctcctgtgtttgtggaagga	14	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9064125	A	A	9064125	3	1	9	1	0	0	0	0	1	0	0	0	10067	623	22	2	20530	2	MUC16	19	9064125	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	411	9064125	50064858	16755	24906											
MUC16	94025	broad.mit.edu	37	chr19	9065289	9065289	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggagggcttgtttcttccAcagggagagagctgggccgt	16	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9065289	G	G	9065289	3	3	9	1	0	0	0	0	1	0	0	0	10067	159	6	5	21694	5	MUC16	19	9065289	Missense_Mutation	SNP	A	TCGA-05-4396-01A-21D-1855-08	1164	9065289	50063694	16756	24907											
MUC16	94025	broad.mit.edu	37	chr19	9065940	9065940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagcttctgtatttgtgGtgtccttgccagtggtcagt	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9065940	T	T	9065940	3	4	9	1	0	0	0	0	1	0	0	0	10067	1261	44	3	22345	3	MUC16	19	9065940	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	651	9065940	50063043	16757	24908											
MUC16	94025	broad.mit.edu	37	chr19	9071237	9071237	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgtctttgtaagtggcCggtctctcatgagtgatgct	13	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9071237	A	A	9071237	2	1	9	1	0	0	0	0	0	0	0	1	10067	639	23	1		1	MUC16	19	9071237	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5297	9071237	50057746	16758	24909											
MUC16	94025	broad.mit.edu	37	chr19	9080467	9080467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctgctggactgctcccCgtctcctctgctggggcagg	12	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9080467	A	A	9080467	2	1	9	1	0	0	0	0	0	0	0	1	10067	639	23	1		1	MUC16	19	9080467	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9230	9080467	50048516	16759	24910											
MUC16	94025	broad.mit.edu	37	chr19	9084742	9084742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggagctcatttgttttcCgtgcgtcaaggatatctgag	13	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9084742	A	A	9084742	3	1	9	1	0	0	0	0	1	0	0	0	10067	652	23	1	36786	1	MUC16	19	9084742	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4275	9084742	50044241	16760	24911											
MUC16	94025	broad.mit.edu	37	chr19	9084758	9084758	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttccgtgcgtcaaggatatCtgaggtttttactgtagttt	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9084758	A	A	9084758	3	1	9	1	0	0	0	0	1	0	0	0	10067	913	32	3	36802	3	MUC16	19	9084758	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16	9084758	50044225	16761	24912											
MUC16	94025	broad.mit.edu	37	chr19	9085580	9085580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacttgggtttgaaacccCagaatggcctgaggacagtg	13	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9085580	A	A	9085580	3	1	9	1	0	0	0	0	1	0	0	0	10067	594	21	2	37624	2	MUC16	19	9085580	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	822	9085580	50043403	16762	24913											
MUC16	94025	broad.mit.edu	37	chr19	9087035	9087035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcttctcccttgtgtccCgagctcagggtagacttcag	12	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9087035	A	A	9087035	3	1	9	1	0	0	0	0	1	0	0	0	10067	652	23	1	39079	1	MUC16	19	9087035	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1455	9087035	50041948	16763	24914											
OR1M1	125963	broad.mit.edu	37	chr19	9204413	9204413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacatcctcctgatggccCgtctcgttttctgcggcagc	9	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9204413	A	A	9204413	3	1	9	1	0	0	0	0	1	0	0	0	11062	652	23	1	495	1	OR1M1	19	9204413	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	117378	9204413	49924570	16764	24915											
ZNF561	93134	broad.mit.edu	37	chr19	9724776	9724776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttctaggttgtatttccCattctaaagttaagcagaaa	8	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9724776	A	A	9724776	3	1	9	1	0	0	0	0	1	0	0	0	18119	595	21	2	1223	2	ZNF561	19	9724776	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	520363	9724776	49404207	16765	24916											
ZNF846	162993	broad.mit.edu	37	chr19	9868448	9868448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaatgggtactaaggccCgaggattgagtgaaagcttt	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9868448	A	A	9868448	2	1	9	1	0	0	0	0	0	0	0	1	18321	639	23	1		1	ZNF846	19	9868448	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	143672	9868448	49260535	16766	24917											
COL5A3	50509	broad.mit.edu	37	chr19	10108801	10108801	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatcactgcgggctctcCttttgctcctttctctccag	6	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10108801	A	A	10108801	4	1	9	1	0	0	0	0	0	1	0	0	3730	690	24	2	4338	2	COL5A3	19	10108801	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	240353	10108801	49020182	16767	24918											
COL5A3	50509	broad.mit.edu	37	chr19	10114750	10114750	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccaggttgtcacagtcGgggaggtaccgctcacaagc	15	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10114750	T	T	10114750	2	4	9	1	0	0	0	0	0	0	0	1	3730	1103	39	1		1	COL5A3	19	10114750	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5949	10114750	49014233	16768	24919											
DNMT1	1786	broad.mit.edu	37	chr19	10291119	10291119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgccattcccactctacGggcttcacttcttgcttggt	7	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10291119	T	T	10291119	3	4	9	1	0	0	0	0	1	0	0	0	4715	1116	39	1	4698	1	DNMT1	19	10291119	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	176369	10291119	48837864	16769	24920											
CDC37	11140	broad.mit.edu	37	chr19	10505732	10505732	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgccggaagcaggcccGggggtccacctttaggctct	14	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10505732	T	T	10505732	2	4	9	1	0	0	0	0	0	0	0	1	3098	1115	39	1		1	CDC37	19	10505732	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	214613	10505732	48623251	16770	24921											
CDC37	11140	broad.mit.edu	37	chr19	10506199	10506199	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcctcctccgtcttctcGggcttggtatttaccatgct	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10506199	T	T	10506199	2	4	9	1	0	0	0	0	0	0	0	1	3098	1103	39	1		1	CDC37	19	10506199	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	467	10506199	48622784	16771	24922											
S1PR5	53637	broad.mit.edu	37	chr19	10624476	10624476	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaaaacttgggaagacagtCgtgggccgagggtgtcagtc	16	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10624476	A	A	10624476	1	1	9	0	1	0	0	0	0	0	0	0	13908	899	31	3		3	S1PR5	19	10624476	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	118277	10624476	48504507	16772	24923											
KRI1	65095	broad.mit.edu	37	chr19	10668891	10668891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcctcctccacggcccCgtagtactcgtccccaaagc	6	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10668891	A	A	10668891	3	1	9	1	0	0	0	0	1	0	0	0	8515	652	23	1	920	1	KRI1	19	10668891	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44415	10668891	48460092	16773	24924											
DNM2	1785	broad.mit.edu	37	chr19	10934484	10934484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacgtctacaaggacctgcGgcagatcgagctggcctgtg	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10934484	T	T	10934484	3	4	9	1	0	0	0	0	1	0	0	0	4712	1116	39	1	2011	1	DNM2	19	10934484	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	265593	10934484	48194499	16774	24925											
LDLR	3949	broad.mit.edu	37	chr19	11230736	11230736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcatcccagtgtttaacGggatttgtcatcttccttgc	8	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11230736	T	T	11230736	1	4	9	0	1	0	0	0	0	0	0	0	8776	1131	39	1		1	LDLR	19	11230736	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	296252	11230736	47898247	16775	24926											
DOCK6	57572	broad.mit.edu	37	chr19	11313376	11313376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacgcggaaatacgtccCgaacacgcgctggggctgtg	14	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11313376	A	A	11313376	3	1	9	1	0	0	0	0	1	0	0	0	4731	652	23	1	926	1	DOCK6	19	11313376	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82640	11313376	47815607	16776	24927											
DOCK6	57572	broad.mit.edu	37	chr19	11363206	11363206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatacatctccaccgcggccCtcacctgggcatccagtttt	7	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11363206	A	A	11363206	3	1	9	1	0	0	0	0	1	0	0	0	4731	681	24	2	5994	2	DOCK6	19	11363206	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49830	11363206	47765777	16777	24928											
RAB3D	9545	broad.mit.edu	37	chr19	11447911	11447911	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaccttgaaatcgatgccCacagtactgacgaaggcggg	12	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11447911	A	A	11447911	2	1	9	1	0	0	0	0	0	0	0	1	13042	581	21	2		2	RAB3D	19	11447911	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	84705	11447911	47681072	16778	24929											
LPPR2	64748	broad.mit.edu	37	chr19	11465625	11465625	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaccctcctctagcccCgactgttagtcttgctgctt	7	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11465625	A	A	11465625	1	1	9	0	1	0	0	0	0	0	0	0	9012	667	23	1		1	LPPR2	19	11465625	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	17714	11465625	47663358	16779	24930											
C19orf39	126074	broad.mit.edu	37	chr19	11486219	11486219	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtacccaccctcaaccCgagagcttttccggctcctg	7	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11486219	A	A	11486219	2	1	9	1	0	0	0	0	0	0	0	1	1941	644	23	1		1	C19orf39	19	11486219	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	20594	11486219	47642764	16780	24931											
EPOR	2057	broad.mit.edu	37	chr19	11488619	11488619	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgagtctgcactggttctCtgagtcatattggatccctg	10	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11488619	A	A	11488619	1	1	9	0	1	0	0	0	0	0	0	0	5231	928	32	3		3	EPOR	19	11488619	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	2400	11488619	47640364	16781	24932											
RGL3	57139	broad.mit.edu	37	chr19	11529849	11529849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcagataccgtccgacGggcgggcgcttggagtttct	17	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11529849	T	T	11529849	1	4	9	0	1	0	0	0	0	0	0	0	13386	1131	39	1		1	RGL3	19	11529849	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41230	11529849	47599134	16782	24933											
CCDC151	115948	broad.mit.edu	37	chr19	11531651	11531651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgagcagggagcgatgtGggatccaggtccccatccct	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11531651	T	T	11531651	1	4	9	0	1	0	0	0	0	0	0	0	2812	1363	47	2		2	CCDC151	19	11531651	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1802	11531651	47597332	16783	24934											
ZNF653	115950	broad.mit.edu	37	chr19	11596533	11596533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacttcttgccacagccaGgatgagggcacactttggtc	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11596533	T	T	11596533	3	4	9	1	0	0	0	0	1	0	0	0	18193	1000	35	2	351	2	ZNF653	19	11596533	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64882	11596533	47532450	16784	24935											
ZNF653	115950	broad.mit.edu	37	chr19	11597920	11597920	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgttgttgccagctccgGggctactggctcctccttct	10	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11597920	T	T	11597920	3	4	9	1	0	0	0	0	1	0	0	0	18193	1232	43	2	642	2	ZNF653	19	11597920	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1387	11597920	47531063	16785	24936											
ZNF653	115950	broad.mit.edu	37	chr19	11609042	11609042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcgacctggcctctctGggcctccatctccatattcc	9	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11609042	T	T	11609042	1	4	9	0	1	0	0	0	0	0	0	0	18193	1363	47	2		2	ZNF653	19	11609042	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11122	11609042	47519941	16786	24937											
ZNF823	55552	broad.mit.edu	37	chr19	11832563	11832563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgtctatgcaaggaacGgagagaactcaatgctttcc	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11832563	T	T	11832563	3	4	9	1	0	0	0	0	1	0	0	0	18308	1116	39	1	50	1	ZNF823	19	11832563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	223521	11832563	47296420	16787	24938											
ZNF823	55552	broad.mit.edu	37	chr19	11832935	11832935	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcccacattccttacactCatatggcttctctccagtgt	4	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11832935	A	A	11832935	4	1	9	1	0	0	0	0	0	1	0	0	18308	835	29	3	422	3	ZNF823	19	11832935	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	372	11832935	47296048	16788	24939											
ZNF700	90592	broad.mit.edu	37	chr19	12060344	12060344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaacacataagaatgcCctctggagaaagaccttata	7	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12060344	A	A	12060344	3	1	9	1	0	0	0	0	1	0	0	0	18231	623	22	2	1519	2	ZNF700	19	12060344	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	227409	12060344	47068639	16789	24940											
ZNF763	284390	broad.mit.edu	37	chr19	12089095	12089095	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaagttggcataggtaactCatcttttaatatgaacatca	7	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12089095	A	A	12089095	4	1	9	1	0	0	0	0	0	1	0	0	18266	838	29	3	379	3	ZNF763	19	12089095	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28751	12089095	47039888	16790	24941											
ZNF44	51710	broad.mit.edu	37	chr19	12383578	12383578	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagatttttcttcactgtGagtcctttcatggcgacaaa	7	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12383578	T	T	12383578	3	4	9	1	0	0	0	0	1	0	0	0	18039	1290	45	3	359	3	ZNF44	19	12383578	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	294483	12383578	46745405	16791	24942											
ZNF44	51710	broad.mit.edu	37	chr19	12384779	12384779	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatgcatctactctggcGggagtgttcttgtttacaat	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12384779	T	T	12384779	2	4	9	1	0	0	0	0	0	0	0	1	18039	1103	39	1		1	ZNF44	19	12384779	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1201	12384779	46744204	16792	24943											
ZNF799	90576	broad.mit.edu	37	chr19	12501353	12501353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattccttacatccatacGggttctctccagtgtgagtt	7	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12501353	T	T	12501353	3	4	9	1	0	0	0	0	1	0	0	0	18295	1116	39	1	76	1	ZNF799	19	12501353	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	116574	12501353	46627630	16793	24944											
ZNF490	57474	broad.mit.edu	37	chr19	12691302	12691302	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacactttactttcttaGggcttctgtctactatgagt	6	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12691302	T	T	12691302	2	4	9	1	0	0	0	0	0	0	0	1	18068	987	35	2		2	ZNF490	19	12691302	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	189949	12691302	46437681	16794	24945											
MAN2B1	4125	broad.mit.edu	37	chr19	12776050	12776050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggagagtccaggcaggcGgagcgacacgcatgttatac	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12776050	T	T	12776050	1	4	9	0	1	0	0	0	0	0	0	0	9308	1131	39	1		1	MAN2B1	19	12776050	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	84748	12776050	46352933	16795	24946											
WDR83	84292	broad.mit.edu	37	chr19	12781311	12781311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgctttaaccgacactGggaaccctgcctttatccca	6	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12781311	T	T	12781311	1	4	9	0	1	0	0	0	0	0	0	0	17459	1363	47	2		2	WDR83	19	12781311	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5261	12781311	46347672	16796	24947											
TNPO2	30000	broad.mit.edu	37	chr19	12813668	12813668	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtgtcttgggtgtgttGggtcggttaatgatttccac	14	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12813668	T	T	12813668	2	4	9	1	0	0	0	0	0	0	0	1	16459	1335	47	2		2	TNPO2	19	12813668	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32357	12813668	46315315	16797	24948											
TNPO2	30000	broad.mit.edu	37	chr19	12814304	12814304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagacggagatgaactctGggttcaggttggtgcccaga	15	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12814304	T	T	12814304	3	4	9	1	0	0	0	0	1	0	0	0	16459	1348	47	2	570	2	TNPO2	19	12814304	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	636	12814304	46314679	16798	24949											
HOOK2	29911	broad.mit.edu	37	chr19	12874385	12874385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcttttcttcctgctccCgctgacttcggcttttctca	7	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12874385	A	A	12874385	3	1	9	1	0	0	0	0	1	0	0	0	7350	652	23	1	200	1	HOOK2	19	12874385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60081	12874385	46254598	16799	24950											
MAST1	22983	broad.mit.edu	37	chr19	12969266	12969266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctacgggtgagccaccCggggctctggcggggggagg	21	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12969266	A	A	12969266	1	1	9	0	1	0	0	0	0	0	0	0	9416	667	23	1		1	MAST1	19	12969266	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	94881	12969266	46159717	16800	24951											
DNASE2	1777	broad.mit.edu	37	chr19	12986960	12986960	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttccgattcatgtcaccCacgcaggtccagggcccttt	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12986960	A	A	12986960	2	1	9	1	0	0	0	0	0	0	0	1	4704	581	21	2		2	DNASE2	19	12986960	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17694	12986960	46142023	16801	24952											
CACNA1A	773	broad.mit.edu	37	chr19	13339571	13339571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgagagggggagatattactCgtaataaactgtacatatcc	10	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13339571	A	A	13339571	3	1	9	1	0	0	0	0	1	0	0	0	2564	884	31	3	2098	3	CACNA1A	19	13339571	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	352611	13339571	45789412	16802	24953											
CACNA1A	773	broad.mit.edu	37	chr19	13355918	13355918	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttccgggacacactgcctcTgggaccgctcccccgccccc	9	22	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13355918	A	A	13355918	1	1	9	0	1	0	0	0	0	0	0	0	2564	1595	55	5		5	CACNA1A	19	13355918	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	16347	13355918	45773065	16803	24954											
PRKACA	5566	broad.mit.edu	37	chr19	14218259	14218259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagttatacagagacgccCgtctcaccggggtgggttca	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14218259	A	A	14218259	1	1	9	0	1	0	0	0	0	0	0	0	12603	667	23	1		1	PRKACA	19	14218259	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	862341	14218259	44910724	16804	24955											
OR7C1	26664	broad.mit.edu	37	chr19	14910187	14910187	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagatagaccccaaagccCgtgccatagaacaaggtgac	10	12	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14910187	A	A	14910187	2	1	9	1	0	0	0	0	0	0	0	1	11311	639	23	1		1	OR7C1	19	14910187	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	691928	14910187	44218796	16805	24956											
OR7A5	26659	broad.mit.edu	37	chr19	14938337	14938337	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggtgagatgcacaggtGgaaaatgccttgtacttccc	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14938337	T	T	14938337	2	4	9	1	0	0	0	0	0	0	0	1	11310	1335	47	2		2	OR7A5	19	14938337	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	28150	14938337	44190646	16806	24957											
OR7A5	26659	broad.mit.edu	37	chr19	14938679	14938679	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgcagggggtgacagatGgccacaaaccggtcataggc	15	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14938679	A	A	14938679	2	1	9	1	0	0	0	0	0	0	0	1	11310	1335	47	4		4	OR7A5	19	14938679	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	342	14938679	44190304	16807	24958											
OR7A17	26333	broad.mit.edu	37	chr19	14992046	14992046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggatgatgagcagattcCcgagcacagtgaccaggtac	12	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14992046	A	A	14992046	3	1	9	1	0	0	0	0	1	0	0	0	11309	623	22	2	809	2	OR7A17	19	14992046	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53367	14992046	44136937	16808	24959											
OR1I1	126370	broad.mit.edu	37	chr19	15198161	15198161	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagagccatcccctttgtGggctgcctcacccagatgta	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15198161	T	T	15198161	2	4	9	1	0	0	0	0	0	0	0	1	11052	1335	47	2		2	OR1I1	19	15198161	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	206115	15198161	43930822	16809	24960											
SYDE1	85360	broad.mit.edu	37	chr19	15224545	15224545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgactggagcgtttgcgggcGggacttcctgccctgtgggc	17	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15224545	T	T	15224545	3	4	9	1	0	0	0	0	1	0	0	0	15554	1116	39	1	2009	1	SYDE1	19	15224545	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26384	15224545	43904438	16810	24961											
BRD4	23476	broad.mit.edu	37	chr19	15355539	15355539	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttcttctgctccctcccGgggtgccccttcttttttga	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15355539	T	T	15355539	2	4	9	1	0	0	0	0	0	0	0	1	1513	1103	39	1		1	BRD4	19	15355539	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	130994	15355539	43773444	16811	24962											
CYP4F3	4051	broad.mit.edu	37	chr19	15760006	15760006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctcagagggtagtgccCgtctggacatgtttgagcac	14	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15760006	A	A	15760006	3	1	9	1	0	0	0	0	1	0	0	0	4223	652	23	1	580	1	CYP4F3	19	15760006	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	404467	15760006	43368977	16812	24963											
CYP4F3	4051	broad.mit.edu	37	chr19	15760811	15760811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctgtacatagacttcCtgtattatctcacccctgat	4	14	1	2	rs143768369		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15760811	A	A	15760811	3	1	9	1	0	0	0	0	1	0	0	0	4223	680	24	2	758	2	CYP4F3	19	15760811	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	805	15760811	43368172	16813	24964											
OR10H4	126541	broad.mit.edu	37	chr19	16060414	16060414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacatcatctgtcatcatGggtgtgatgctggtgtgtgt	13	6	4	2	rs138110639		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16060414	T	T	16060414	3	4	9	1	0	0	0	0	1	0	0	0	11002	1348	47	2	599	2	OR10H4	19	16060414	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	299603	16060414	43068569	16814	24965											
EPS15L1	58513	broad.mit.edu	37	chr19	16487937	16487937	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagcttactgaccgctGggcggtttaggccgtggagg	16	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16487937	C	C	16487937	2	2	9	1	0	0	0	0	0	0	0	1	5235	1335	47	4		4	EPS15L1	19	16487937	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	427523	16487937	42641046	16815	24966											
EPS15L1	58513	broad.mit.edu	37	chr19	16545162	16545162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgcagaagaaccaagccCgtggcccacttaccctgccc	10	16	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16545162	A	A	16545162	1	1	9	0	1	0	0	0	0	0	0	0	5235	667	23	1		1	EPS15L1	19	16545162	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	57225	16545162	42583821	16816	24967											
TMEM38A	79041	broad.mit.edu	37	chr19	16791232	16791232	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattttcttctgccccctGgacctcttctacaagtgtgt	7	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16791232	T	T	16791232	2	4	9	1	0	0	0	0	0	0	0	1	16282	1335	47	2		2	TMEM38A	19	16791232	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	246070	16791232	42337751	16817	24968											
NWD1	284434	broad.mit.edu	37	chr19	16861221	16861221	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctacattgtgtcttccCggtaagtctctgtgttttga	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16861221	A	A	16861221	2	1	9	1	0	0	0	0	0	0	0	1	10876	666	23	1		1	NWD1	19	16861221	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	69989	16861221	42267762	16818	24969											
NWD1	284434	broad.mit.edu	37	chr19	16918734	16918734	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcgtggccattctgacGgactaccgcgtggtctacag	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16918734	T	T	16918734	2	4	9	1	0	0	0	0	0	0	0	1	10876	1103	39	1		1	NWD1	19	16918734	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57513	16918734	42210249	16819	24970											
SIN3B	23309	broad.mit.edu	37	chr19	16973748	16973748	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagacgattactgcatgtcCaagttcaagaatacctgctg	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16973748	A	A	16973748	2	1	9	1	0	0	0	0	0	0	0	1	14439	581	21	2		2	SIN3B	19	16973748	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	55014	16973748	42155235	16820	24971											
CPAMD8	27151	broad.mit.edu	37	chr19	17014451	17014451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctggagacagaagtcacCgtgaggccctgctgacccct	12	13	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17014451	A	A	17014451	1	1	9	0	1	0	0	0	0	0	0	0	3827	667	23	1		1	CPAMD8	19	17014451	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	40703	17014451	42114532	16821	24972											
ANKLE1	126549	broad.mit.edu	37	chr19	17396262	17396262	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactcaggacctgccagccCgagccttctcactgacccca	8	18	2	2	rs139883964		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17396262	A	A	17396262	2	1	9	1	0	0	0	0	0	0	0	1	632	644	23	1		1	ANKLE1	19	17396262	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	381811	17396262	41732721	16822	24973											
ANO8	57719	broad.mit.edu	37	chr19	17444182	17444182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttggcacttggtagagcGgggagtcgggtggcaggctc	20	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17444182	T	T	17444182	1	4	9	0	1	0	0	0	0	0	0	0	703	1131	39	1		1	ANO8	19	17444182	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47920	17444182	41684801	16823	24974											
UNC13A	23025	broad.mit.edu	37	chr19	17738754	17738754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgagaatgcagggctgtGggtgggaacagagaggggag	20	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17738754	T	T	17738754	1	4	9	0	1	0	0	0	0	0	0	0	17110	1363	47	2		2	UNC13A	19	17738754	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	294572	17738754	41390229	16824	24975											
FCHO1	23149	broad.mit.edu	37	chr19	17865986	17865986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcaggatgtcgtattttGgggagcatttttgggtaaga	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17865986	T	T	17865986	3	4	9	1	0	0	0	0	1	0	0	0	5844	1348	47	2	15	2	FCHO1	19	17865986	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127232	17865986	41262997	16825	24976											
IL12RB1	3594	broad.mit.edu	37	chr19	18179254	18179254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccacaaggtgagcttctcGgggtgcgcagaggcaaagat	15	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18179254	T	T	18179254	2	4	9	1	0	0	0	0	0	0	0	1	7696	1103	39	1		1	IL12RB1	19	18179254	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	313268	18179254	40949729	16826	24977											
IL12RB1	3594	broad.mit.edu	37	chr19	18180464	18180464	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacgtcatgctctgagcccGggctggccaatacatggtgg	13	11	2	1	rs150261140		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18180464	T	T	18180464	2	4	9	1	0	0	0	0	0	0	0	1	7696	1115	39	1		1	IL12RB1	19	18180464	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1210	18180464	40948519	16827	24978											
ELL	8178	broad.mit.edu	37	chr19	18555948	18555948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacaccttggaagtagcGggcagggaggctgccccggg	16	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18555948	T	T	18555948	1	4	9	0	1	0	0	0	0	0	0	0	5104	1131	39	1		1	ELL	19	18555948	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	375484	18555948	40573035	16828	24979											
C19orf50	79036	broad.mit.edu	37	chr19	18675686	18675686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccaccatcaggctggacCgctttgagaagaccaatgag	10	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18675686	A	A	18675686	3	1	9	1	0	0	0	0	1	0	0	0	1951	652	23	1	115	1	C19orf50	19	18675686	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	119738	18675686	40453297	16829	24980											
UPF1	5976	broad.mit.edu	37	chr19	18974273	18974273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcatcattgtgggcaaccCgaaggcactatcaaagcagc	10	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18974273	A	A	18974273	3	1	9	1	0	0	0	0	1	0	0	0	17129	652	23	1	2701	1	UPF1	19	18974273	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	298587	18974273	40154710	16830	24981											
COPE	11316	broad.mit.edu	37	chr19	19030140	19030140	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccgccggaggccgggccGggggccggaggcgccatttc	20	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19030140	T	T	19030140	2	4	9	1	0	0	0	0	0	0	0	1	3762	1103	39	1		1	COPE	19	19030140	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55867	19030140	40098843	16831	24982											
SFRS14	10147	broad.mit.edu	37	chr19	19112447	19112447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggacatgggacgacccCgaggcctgtcataggcaatt	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19112447	A	A	19112447	3	1	9	1	0	0	0	0	1	0	0	0	14283	652	23	1	294	1	SFRS14	19	19112447	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82307	19112447	40016536	16832	24983											
SFRS14	10147	broad.mit.edu	37	chr19	19119143	19119143	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacaggtcagggttatcGgtgctgttttctatgctgaa	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19119143	T	T	19119143	2	4	9	1	0	0	0	0	0	0	0	1	14283	1103	39	1		1	SFRS14	19	19119143	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6696	19119143	40009840	16833	24984											
SFRS14	10147	broad.mit.edu	37	chr19	19121008	19121008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgaggttgcggacagccCgggagtacagcatggccctc	14	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19121008	A	A	19121008	3	1	9	1	0	0	0	0	1	0	0	0	14283	652	23	1	1278	1	SFRS14	19	19121008	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1865	19121008	40007975	16834	24985											
SFRS14	10147	broad.mit.edu	37	chr19	19136359	19136359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggatttggttagtgccCtgagttttgggagtaatacg	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19136359	A	A	19136359	3	1	9	1	0	0	0	0	1	0	0	0	14283	680	24	2	2482	2	SFRS14	19	19136359	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15351	19136359	39992624	16835	24986											
RFXANK	8625	broad.mit.edu	37	chr19	19304683	19304683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggctaggtatgcagtcGgtgcctactttattataact	10	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19304683	T	T	19304683	1	4	9	0	1	0	0	0	0	0	0	0	13377	1131	39	1		1	RFXANK	19	19304683	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	168324	19304683	39824300	16836	24987											
HAPLN4	404037	broad.mit.edu	37	chr19	19371831	19371831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacgtcggtgaaggccagcGggtccaccacctttgtccac	12	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19371831	T	T	19371831	3	4	9	1	0	0	0	0	1	0	0	0	7023	1116	39	1	945	1	HAPLN4	19	19371831	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	67148	19371831	39757152	16837	24988											
KIAA0892	23383	broad.mit.edu	37	chr19	19454556	19454556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcctagccagtgtggcaGgagacaggaacgaggtgggg	20	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19454556	T	T	19454556	1	4	9	0	1	0	0	0	0	0	0	0	8266	1015	35	2		2	KIAA0892	19	19454556	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	82725	19454556	39674427	16838	24989											
KIAA0892	23383	broad.mit.edu	37	chr19	19460145	19460145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtcaggcgatttctgcGggaaactctgaagatgtcca	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19460145	T	T	19460145	3	4	9	1	0	0	0	0	1	0	0	0	8266	1116	39	1	1510	1	KIAA0892	19	19460145	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5589	19460145	39668838	16839	24990											
TSSK6	83983	broad.mit.edu	37	chr19	19625987	19625987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacgatgtacagtttccCgttgcacacctcgatgaact	7	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19625987	A	A	19625987	3	1	9	1	0	0	0	0	1	0	0	0	16797	652	23	1	575	1	TSSK6	19	19625987	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	165842	19625987	39502996	16840	24991											
PBX4	80714	broad.mit.edu	37	chr19	19675780	19675780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctggcgtggttccctGggaccccaacttccgtggta	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19675780	T	T	19675780	3	4	9	1	0	0	0	0	1	0	0	0	11589	1348	47	2	249	2	PBX4	19	19675780	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49793	19675780	39453203	16841	24992											
GMIP	51291	broad.mit.edu	37	chr19	19741375	19741375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacccaagaatgagaccCcaacactaaaatcccagttc	5	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19741375	A	A	19741375	1	1	9	0	1	0	0	0	0	0	0	0	6555	638	22	2		2	GMIP	19	19741375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	65595	19741375	39387608	16842	24993											
GMIP	51291	broad.mit.edu	37	chr19	19745900	19745900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaaagggtacctcctcCgggaagtccctgggtagctg	12	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19745900	A	A	19745900	2	1	9	1	0	0	0	0	0	0	0	1	6555	639	23	1		1	GMIP	19	19745900	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	4525	19745900	39383083	16843	24994											
ATP13A1	57130	broad.mit.edu	37	chr19	19756737	19756737	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatggccatgatgtagacGgtgctgttgaccaggcttgg	15	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19756737	T	T	19756737	2	4	9	1	0	0	0	0	0	0	0	1	1127	1103	39	1		1	ATP13A1	19	19756737	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10837	19756737	39372246	16844	24995											
ZNF737	100129842	broad.mit.edu	37	chr19	20727897	20727897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttgccacattcttcaCatttgtagggtttctctcca	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20727897	A	A	20727897	3	1	9	1	0	0	0	0	1	0	0	0	18255	478	17	3	502	3	ZNF737	19	20727897	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	971160	20727897	38401086	16845	24996											
ZNF714	148206	broad.mit.edu	37	chr19	21281645	21281645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtctctaagcaagaccCgatcaccagtctagagcaag	9	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21281645	A	A	21281645	3	1	9	1	0	0	0	0	1	0	0	0	18246	652	23	1	77	1	ZNF714	19	21281645	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	553748	21281645	37847338	16846	24997											
ZNF91	7644	broad.mit.edu	37	chr19	23567413	23567413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgagacattctgtctccCgatatcatcagtccccctct	5	15	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23567413	A	A	23567413	1	1	9	0	1	0	0	0	0	0	0	0	18329	667	23	1		1	ZNF91	19	23567413	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2285768	23567413	35561570	16847	24998											
UQCRFS1	7386	broad.mit.edu	37	chr19	29698774	29698774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaggggtttgcctctcCatttgaaagccatgttcttg	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29698774	A	A	29698774	3	1	9	1	0	0	0	0	1	0	0	0	17147	595	21	2	322	2	UQCRFS1	19	29698774	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6131361	29698774	29430209	16848	24999											
UQCRFS1	7386	broad.mit.edu	37	chr19	29699112	29699112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaattagatgagtatccCgaagggagtatatatcagga	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29699112	A	A	29699112	1	1	9	0	1	0	0	0	0	0	0	0	17147	667	23	1		1	UQCRFS1	19	29699112	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	338	29699112	29429871	16849	25000											
POP4	10775	broad.mit.edu	37	chr19	30099607	30099607	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaagaggcgaatgactcCgatgtccaggtcagttcttg	12	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30099607	A	A	30099607	2	1	9	1	0	0	0	0	0	0	0	1	12347	639	23	1		1	POP4	19	30099607	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	400495	30099607	29029376	16850	25001											
CCNE1	898	broad.mit.edu	37	chr19	30313487	30313487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcacacaacatacagaccCacagagacagcttggatttg	8	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30313487	A	A	30313487	3	1	9	1	0	0	0	0	1	0	0	0	2950	594	21	2	1125	2	CCNE1	19	30313487	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	213880	30313487	28815496	16851	25002											
ZNF536	9745	broad.mit.edu	37	chr19	31040367	31040367	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcttagcagcctttaacGgacttgcaagtagcacagca	10	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31040367	T	T	31040367	4	4	9	1	0	0	0	0	0	1	0	0	18101	1117	39	1	3851	1	ZNF536	19	31040367	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	726880	31040367	28088616	16852	25003											
TSHZ3	57616	broad.mit.edu	37	chr19	31768236	31768236	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtctttgccgttgtcacCgtggatgaggaggttgccgg	16	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768236	A	A	31768236	2	1	9	1	0	0	0	0	0	0	0	1	16750	639	23	1		1	TSHZ3	19	31768236	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	727869	31768236	27360747	16853	25004											
TSHZ3	57616	broad.mit.edu	37	chr19	31769558	31769558	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggatctgcgacttccGggcctcaaagtgccatgcat	10	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31769558	T	T	31769558	2	4	9	1	0	0	0	0	0	0	0	1	16750	1115	39	1		1	TSHZ3	19	31769558	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1322	31769558	27359425	16854	25005											
ZNF507	22847	broad.mit.edu	37	chr19	32873352	32873352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggaccgttctgattttcCcttgcctgcctgtcttccag	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32873352	A	A	32873352	1	1	9	0	1	0	0	0	0	0	0	0	18080	638	22	2		2	ZNF507	19	32873352	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1103794	32873352	26255631	16855	25006											
DPY19L3	147991	broad.mit.edu	37	chr19	32954843	32954843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatgtagccctgaaatatGggagttacttctgaagtcag	10	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32954843	T	T	32954843	3	4	9	1	0	0	0	0	1	0	0	0	4782	1357	47	2	1564	2	DPY19L3	19	32954843	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81491	32954843	26174140	16856	25007											
ANKRD27	84079	broad.mit.edu	37	chr19	33140669	33140669	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagtagactggatgctgctCgacaggcttcctttgcaggg	13	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33140669	A	A	33140669	2	1	9	1	0	0	0	0	0	0	0	1	655	871	31	3		3	ANKRD27	19	33140669	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	185826	33140669	25988314	16857	25008											
CCDC123	84902	broad.mit.edu	37	chr19	33428539	33428539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcaaaaggcaaatacctGgggagggtggaggtttctca	13	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33428539	T	T	33428539	3	4	9	1	0	0	0	0	1	0	0	0	2785	1348	47	2	1738	2	CCDC123	19	33428539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	287870	33428539	25700444	16858	25009											
GPATCH1	55094	broad.mit.edu	37	chr19	33602681	33602681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagagtgggagcgaggccGtgagcgggatgagtttgccc	19	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33602681	T	T	33602681	3	4	9	1	0	0	0	0	1	0	0	0	6655	1145	40	3	1683	3	GPATCH1	19	33602681	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	174142	33602681	25526302	16859	25010											
WDR88	126248	broad.mit.edu	37	chr19	33651446	33651446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatctgaacttccctccCgagtccttcctgtgctcaat	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33651446	A	A	33651446	1	1	9	0	1	0	0	0	0	0	0	0	17462	667	23	1		1	WDR88	19	33651446	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	48765	33651446	25477537	16860	25011											
ZNF599	148103	broad.mit.edu	37	chr19	35251100	35251100	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaccctttcccacattcCgtgcatgtgtaagggttatt	7	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35251100	A	A	35251100	2	1	9	1	0	0	0	0	0	0	0	1	18156	639	23	1		1	ZNF599	19	35251100	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1599654	35251100	23877883	16861	25012											
GRAMD1A	57655	broad.mit.edu	37	chr19	35500314	35500314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcatcctgactcctctcCttttctttgcagaagatgca	7	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35500314	A	A	35500314	1	1	9	0	1	0	0	0	0	0	0	0	6813	696	24	2		2	GRAMD1A	19	35500314	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	249214	35500314	23628669	16862	25013											
MAG	4099	broad.mit.edu	37	chr19	35793438	35793438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctccacacagagcaaccCggaccctattctcaccatct	6	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35793438	A	A	35793438	3	1	9	1	0	0	0	0	1	0	0	0	9250	652	23	1	1076	1	MAG	19	35793438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	293124	35793438	23335545	16863	25014											
MAG	4099	broad.mit.edu	37	chr19	35801122	35801122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgggcacgtcttagatcCaagctcccaaggctgaccaa	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35801122	A	A	35801122	1	1	9	0	1	0	0	0	0	0	0	0	9250	609	21	2		2	MAG	19	35801122	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7684	35801122	23327861	16864	25015											
SBSN	374897	broad.mit.edu	37	chr19	36017614	36017614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattctgcagctccttccCggcctggccagcagcatggt	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36017614	A	A	36017614	3	1	9	1	0	0	0	0	1	0	0	0	13976	652	23	1	218	1	SBSN	19	36017614	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	216492	36017614	23111369	16865	25016											
GAPDHS	26330	broad.mit.edu	37	chr19	36029295	36029295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgatccattcattgaccCggaatacatggtcagtagct	9	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36029295	A	A	36029295	3	1	9	1	0	0	0	0	1	0	0	0	6299	652	23	1	342	1	GAPDHS	19	36029295	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	11681	36029295	23099688	16866	25017											
GAPDHS	26330	broad.mit.edu	37	chr19	36033786	36033786	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcataccccaagaggggtaaGggtggaggggtggctctgcg	19	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36033786	C	C	36033786	1	2	9	0	1	0	0	0	0	0	0	0	6299	1015	35	4		4	GAPDHS	19	36033786	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	4491	36033786	23095197	16867	25018											
ETV2	2116	broad.mit.edu	37	chr19	36135543	36135543	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactccgaccgagcgggcCtctgtcctaggtggctcggc	13	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36135543	T	T	36135543	1	4	9	0	1	0	0	0	0	0	0	0	5320	696	24	4		4	ETV2	19	36135543	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	101757	36135543	22993440	16868	25019											
MLL4	9757	broad.mit.edu	37	chr19	36219845	36219845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttggtggcctggctccGggtcctgattcttagacctc	13	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36219845	T	T	36219845	1	4	9	0	1	0	0	0	0	0	0	0	9716	1131	39	1		1	MLL4	19	36219845	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	84302	36219845	22909138	16869	25020											
U2AF1L4	199746	broad.mit.edu	37	chr19	36233654	36233654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtgatcaggggaacacCgatggttcctctctcgggga	14	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36233654	A	A	36233654	3	1	9	1	0	0	0	0	1	0	0	0	16948	652	23	1	158	1	U2AF1L4	19	36233654	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13809	36233654	22895329	16870	25021											
ARHGAP33	115703	broad.mit.edu	37	chr19	36269275	36269275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcaggtgaggccatccCgcctctcatctagcctgaga	10	15	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36269275	A	A	36269275	1	1	9	0	1	0	0	0	0	0	0	0	884	667	23	1		1	ARHGAP33	19	36269275	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35621	36269275	22859708	16871	25022											
APLP1	333	broad.mit.edu	37	chr19	36363397	36363397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcagtcactcccacccCgaggcccacagacggtgtgg	11	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36363397	A	A	36363397	3	1	9	1	0	0	0	0	1	0	0	0	780	652	23	1	889	1	APLP1	19	36363397	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94122	36363397	22765586	16872	25023											
THAP8	199745	broad.mit.edu	37	chr19	36545052	36545052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacttgtagaagctcacaGggcggttgtctgcacccagg	12	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36545052	T	T	36545052	3	4	9	1	0	0	0	0	1	0	0	0	15973	1000	35	2	772	2	THAP8	19	36545052	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	181655	36545052	22583931	16873	25024											
ZNF565	147929	broad.mit.edu	37	chr19	36674430	36674430	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgtgatgctggaacacGggcatatgtccataggtgac	14	8	0	2	rs146738582		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36674430	T	T	36674430	2	4	9	1	0	0	0	0	0	0	0	1	18123	1103	39	1		1	ZNF565	19	36674430	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	129378	36674430	22454553	16874	25025											
ZNF146	7705	broad.mit.edu	37	chr19	36727547	36727547	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcagaacacccatactggcGagaagcttttcgaatgtaat	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36727547	T	T	36727547	4	4	9	1	0	0	0	0	0	1	0	0	17859	1059	37	3	207	3	ZNF146	19	36727547	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53117	36727547	22401436	16875	25026											
ZNF566	84924	broad.mit.edu	37	chr19	36963871	36963871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggctccttcccttgctcCaagtaggagatcacatttgg	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36963871	A	A	36963871	3	1	9	1	0	0	0	0	1	0	0	0	18124	593	21	2	1090	2	ZNF566	19	36963871	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	236324	36963871	22165112	16876	25027											
ZNF529	57711	broad.mit.edu	37	chr19	37038598	37038598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcactctaaaggatttccCacagaatgagcattcaaagt	7	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37038598	A	A	37038598	3	1	9	1	0	0	0	0	1	0	0	0	18097	594	21	2	833	2	ZNF529	19	37038598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74727	37038598	22090385	16877	25028											
ZNF382	84911	broad.mit.edu	37	chr19	37118176	37118176	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaccagagaattcacacGggggaaaaaccctatatttg	8	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37118176	T	T	37118176	2	4	9	1	0	0	0	0	0	0	0	1	17999	1103	39	1		1	ZNF382	19	37118176	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	79578	37118176	22010807	16878	25029											
ZNF568	374900	broad.mit.edu	37	chr19	37441829	37441829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatgaatgtaataaatgtGggaaagccttttctcagtgc	9	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37441829	T	T	37441829	3	4	9	1	0	0	0	0	1	0	0	0	18126	1348	47	2	1792	2	ZNF568	19	37441829	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	323653	37441829	21687154	16879	25030											
ZNF569	148266	broad.mit.edu	37	chr19	37916892	37916892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaagttacatagatttGggcatacatactaggaacaa	10	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37916892	T	T	37916892	1	4	9	0	1	0	0	0	0	0	0	0	18127	1363	47	2		2	ZNF569	19	37916892	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	475063	37916892	21212091	16880	25031											
ZNF540	163255	broad.mit.edu	37	chr19	38103903	38103903	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatcagaaaattcatacGggtgtaaaaccatacaaatg	7	7	2	1	rs150810196		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38103903	T	T	38103903	2	4	9	1	0	0	0	0	0	0	0	1	18102	1103	39	1		1	ZNF540	19	38103903	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	187011	38103903	21025080	16881	25032											
SIPA1L3	23094	broad.mit.edu	37	chr19	38673232	38673232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagactcctcggccctccCagctggcccagcccagcccc	9	22	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38673232	A	A	38673232	3	1	9	1	0	0	0	0	1	0	0	0	14444	595	21	2	4336	2	SIPA1L3	19	38673232	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	569329	38673232	20455751	16882	25033											
KCNK6	9424	broad.mit.edu	37	chr19	38817441	38817441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcacttggtggccctgttGggggtcgtagtgaccgtctg	17	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38817441	T	T	38817441	3	4	9	1	0	0	0	0	1	0	0	0	8140	1339	47	2	537	2	KCNK6	19	38817441	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	144209	38817441	20311542	16883	25034											
CATSPERG	57828	broad.mit.edu	37	chr19	38853033	38853033	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggattactacttcttcttGgcgagcaattggcgaagcgc	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38853033	C	C	38853033	3	2	9	1	0	0	0	0	1	0	0	0	2718	1339	47	4	2245	4	CATSPERG	19	38853033	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35592	38853033	20275950	16884	25035											
CATSPERG	57828	broad.mit.edu	37	chr19	38858085	38858085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcactttcccccgtctcGgtcctcagcttctcgggcca	7	18	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38858085	T	T	38858085	1	4	9	0	1	0	0	0	0	0	0	0	2718	1131	39	1		1	CATSPERG	19	38858085	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5052	38858085	20270898	16885	25036											
CATSPERG	57828	broad.mit.edu	37	chr19	38858180	38858180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcttgattcaagatttGgtgacaggagactccggcag	11	8	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38858180	T	T	38858180	3	4	9	1	0	0	0	0	1	0	0	0	2718	1339	47	2	2892	2	CATSPERG	19	38858180	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95	38858180	20270803	16886	25037											
CATSPERG	57828	broad.mit.edu	37	chr19	38858394	38858394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgaggacgaaatctacCgcttcaacagccccctggac	9	14	2	1	rs141648079		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38858394	A	A	38858394	3	1	9	1	0	0	0	0	1	0	0	0	2718	652	23	1	3002	1	CATSPERG	19	38858394	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	214	38858394	20270589	16887	25038											
SPRED3	399473	broad.mit.edu	37	chr19	38885032	38885032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggcatatgctgtgccCttgacagtggccctaaccgc	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38885032	A	A	38885032	1	1	9	0	1	0	0	0	0	0	0	0	15212	681	24	2		2	SPRED3	19	38885032	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	26638	38885032	20243951	16888	25039											
RYR1	6261	broad.mit.edu	37	chr19	38948294	38948294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctctcaacatctgacccCagaactcagaacctctcaac	5	16	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38948294	A	A	38948294	1	1	9	0	1	0	0	0	0	0	0	0	13879	609	21	2		2	RYR1	19	38948294	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	63262	38948294	20180689	16889	25040											
RYR1	6261	broad.mit.edu	37	chr19	38954415	38954415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaacaagaggctgcaccCgtgtcttgtggacttccaca	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38954415	A	A	38954415	3	1	9	1	0	0	0	0	1	0	0	0	13879	652	23	1	2797	1	RYR1	19	38954415	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6121	38954415	20174568	16890	25041											
RYR1	6261	broad.mit.edu	37	chr19	39062838	39062838	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacaggctacatggaaccCgccctgcggtgtctgagcct	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39062838	A	A	39062838	2	1	9	1	0	0	0	0	0	0	0	1	13879	639	23	1		1	RYR1	19	39062838	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	108423	39062838	20066145	16891	25042											
MAP4K1	11184	broad.mit.edu	37	chr19	39087980	39087980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcacccacacagcacgccCggcagcctttggtgtcctgg	10	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39087980	A	A	39087980	3	1	9	1	0	0	0	0	1	0	0	0	9351	652	23	1	776	1	MAP4K1	19	39087980	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25142	39087980	20041003	16892	25043											
LGALS4	3960	broad.mit.edu	37	chr19	39293029	39293029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccctccttgcagcctccCgaaatatggcacaggctgtg	11	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39293029	A	A	39293029	3	1	9	1	0	0	0	0	1	0	0	0	8817	652	23	1	397	1	LGALS4	19	39293029	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	205049	39293029	19835954	16893	25044											
LGALS4	3960	broad.mit.edu	37	chr19	39299312	39299312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagaaaaggaaggaaggcGggaaggaaggaagcagccaa	17	4	0	1	rs117080893	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39299312	T	T	39299312	1	4	9	0	1	0	0	0	0	0	0	0	8817	1131	39	1		1	LGALS4	19	39299312	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	6283	39299312	19829671	16894	25045											
SIRT2	22933	broad.mit.edu	37	chr19	39371340	39371340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacctggccagctttctcCttgttgatgagcaggcgagg	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39371340	A	A	39371340	3	1	9	1	0	0	0	0	1	0	0	0	14451	680	24	2	324	2	SIRT2	19	39371340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72028	39371340	19757643	16895	25046											
NCCRP1	342897	broad.mit.edu	37	chr19	39691108	39691108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttctgggagaggaccccCtggccgctgggtccaggtga	15	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39691108	A	A	39691108	3	1	9	1	0	0	0	0	1	0	0	0	10308	681	24	2	689	2	NCCRP1	19	39691108	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	319768	39691108	19437875	16896	25047											
PLEKHG2	64857	broad.mit.edu	37	chr19	39907169	39907169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaggacctggggtctccCtgactcccatgtcacccgca	10	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39907169	A	A	39907169	1	1	9	0	1	0	0	0	0	0	0	0	12164	696	24	2		2	PLEKHG2	19	39907169	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	216061	39907169	19221814	16897	25048											
SUPT5H	6829	broad.mit.edu	37	chr19	39961077	39961077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcaggtgtggatgttGggggccagcatgaatggggc	18	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39961077	T	T	39961077	3	4	9	1	0	0	0	0	1	0	0	0	15517	1348	47	2	1657	2	SUPT5H	19	39961077	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53908	39961077	19167906	16898	25049											
LGALS14	56891	broad.mit.edu	37	chr19	40197971	40197971	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaatgctactatttaccCtttgaagatggcaaaccatt	7	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40197971	A	A	40197971	2	1	9	1	0	0	0	0	0	0	0	1	8813	668	24	2		2	LGALS14	19	40197971	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	236894	40197971	18931012	16899	25050											
FCGBP	8857	broad.mit.edu	37	chr19	40368749	40368749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggagcgtcacgtctaccCgccagttccagtcatagctg	12	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40368749	A	A	40368749	3	1	9	1	0	0	0	0	1	0	0	0	5835	652	23	1	3654	1	FCGBP	19	40368749	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	170778	40368749	18760234	16900	25051											
FCGBP	8857	broad.mit.edu	37	chr19	40399161	40399161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtgaaaggtgcccagGggaatggtgaagcccttacc	14	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40399161	T	T	40399161	1	4	9	0	1	0	0	0	0	0	0	0	5835	1247	43	2		2	FCGBP	19	40399161	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30412	40399161	18729822	16901	25052											
PSMC4	5704	broad.mit.edu	37	chr19	40486251	40486251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctgctacggccaggacGgctggaccgtaaaattgaat	13	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40486251	T	T	40486251	3	4	9	1	0	0	0	0	1	0	0	0	12795	1116	39	1	1011	1	PSMC4	19	40486251	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87090	40486251	18642732	16902	25053											
ZNF780B	163131	broad.mit.edu	37	chr19	40542067	40542067	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatggcgattaagctgggtGggaagattaaaggcttttcc	13	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40542067	T	T	40542067	2	4	9	1	0	0	0	0	0	0	0	1	18282	1335	47	2		2	ZNF780B	19	40542067	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55816	40542067	18586916	16903	25054											
MAP3K10	4294	broad.mit.edu	37	chr19	40712040	40712040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcaagctgcgggaaggcGgcagccacatcagcctgccc	13	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40712040	T	T	40712040	3	4	9	1	0	0	0	0	1	0	0	0	9336	1116	39	1	1429	1	MAP3K10	19	40712040	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	169973	40712040	18416943	16904	25055											
TTC9B	148014	broad.mit.edu	37	chr19	40724044	40724044	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtacttgccgatggcctccCggaacttcttctctcgatag	10	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40724044	A	A	40724044	3	1	9	1	0	0	0	0	1	0	0	0	16842	652	23	1	486	1	TTC9B	19	40724044	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12004	40724044	18404939	16905	25056											
SPTBN4	57731	broad.mit.edu	37	chr19	40996162	40996162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcgcttccaggtgaccCtcgagtggcccctgccaagc	11	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40996162	A	A	40996162	1	1	9	0	1	0	0	0	0	0	0	0	15239	696	24	2		2	SPTBN4	19	40996162	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	272118	40996162	18132821	16906	25057											
SPTBN4	57731	broad.mit.edu	37	chr19	41077931	41077931	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtcgctccaggtcgtgGgtgagcctgtactgtgtgct	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41077931	C	C	41077931	3	2	9	1	0	0	0	0	1	0	0	0	15239	1241	43	4	7550	4	SPTBN4	19	41077931	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	81769	41077931	18051052	16907	25058											
SHKBP1	92799	broad.mit.edu	37	chr19	41084103	41084103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgaagcccagttctatGggctcactcctctgggtaag	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41084103	T	T	41084103	3	4	9	1	0	0	0	0	1	0	0	0	14397	1348	47	2	322	2	SHKBP1	19	41084103	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6172	41084103	18044880	16908	25059											
NUMBL	9253	broad.mit.edu	37	chr19	41173727	41173727	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcccaagcccgggtaggcGggcacaaaagggggctgcat	16	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41173727	T	T	41173727	2	4	9	1	0	0	0	0	0	0	0	1	10847	1103	39	1		1	NUMBL	19	41173727	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	89624	41173727	17955256	16909	25060											
SNRPA	6626	broad.mit.edu	37	chr19	41257209	41257209	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttacctgacttccttttcGgaggaagatccttgagcagc	9	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41257209	T	T	41257209	1	4	9	0	1	0	0	0	0	0	0	0	14973	1131	39	1		1	SNRPA	19	41257209	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	83482	41257209	17871774	16910	25061											
SNRPA	6626	broad.mit.edu	37	chr19	41257237	41257238	+	5'UTR	DNP	GG	TT	TT													atccttgagcagccgacgttGggacaaaggatttggagaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	41257238	TT	TT	41257237	1	4	9	0	1	0	0	0	0	0	0	0	14973	1363	47	2		2	SNRPA	19	41257237	5'UTR	DNP	GG	TCGA-05-4396-01A-21D-1855-08	28	41257237	17871746	16911	25062											
MIA	8190	broad.mit.edu	37	chr19	41281378	41281378	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagtttccttgtactacGggagagagggaggggaggaa	16	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41281378	T	T	41281378	1	4	9	0	1	0	0	0	0	0	0	0	9656	1131	39	1		1	MIA	19	41281378	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	24141	41281378	17847605	16912	25063											
EGLN2	112398	broad.mit.edu	37	chr19	41284337	41284337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtcctgggtctgggccCagggaggatgcggcctgtgg	21	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41284337	A	A	41284337	1	1	9	0	1	0	0	0	0	0	0	0	5009	609	21	2		2	EGLN2	19	41284337	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2959	41284337	17844646	16913	25064											
CYP2A6	1548	broad.mit.edu	37	chr19	41351982	41351982	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttttcaagtagaactcCgtgttggggttcttctcctc	10	9	3	1	rs28399450	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41351982	A	A	41351982	2	1	9	1	0	0	0	0	0	0	0	1	4195	639	23	1		1	CYP2A6	19	41351982	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	67645	41351982	17777001	16914	25065											
CYP2F1	1572	broad.mit.edu	37	chr19	41622080	41622080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgccctccacacgccagCagctgccttcaccatggaca	7	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41622080	A	A	41622080	1	1	9	0	1	0	0	0	0	0	0	0	4204	725	25	3		3	CYP2F1	19	41622080	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	270098	41622080	17506903	16915	25066											
TMEM91	641649	broad.mit.edu	37	chr19	41888755	41888755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaccccacgaccacctcGgcttggctgtcttctccatg	7	17	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41888755	T	T	41888755	3	4	9	1	0	0	0	0	1	0	0	0	16343	1116	39	1	295	1	TMEM91	19	41888755	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	266675	41888755	17240228	16916	25067											
BCKDHA	593	broad.mit.edu	37	chr19	41930426	41930426	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtgtatcaggagatgccCgcccagctccgcaagcagca	12	14	1	1	rs147021347	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41930426	A	A	41930426	2	1	9	1	0	0	0	0	0	0	0	1	1364	639	23	1		1	BCKDHA	19	41930426	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41671	41930426	17198557	16917	25068											
CEACAM7	1087	broad.mit.edu	37	chr19	42190905	42190905	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatcagcagggttccattGgggtatattgtctctcgacc	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42190905	T	T	42190905	2	4	9	1	0	0	0	0	0	0	0	1	3227	1335	47	2		2	CEACAM7	19	42190905	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	260479	42190905	16938078	16918	25069											
CEACAM5	1048	broad.mit.edu	37	chr19	42231242	42231242	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgctctgatatagcagccCtggtgtagtttcttcatttc	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42231242	A	A	42231242	1	1	9	0	1	0	0	0	0	0	0	0	3225	696	24	2		2	CEACAM5	19	42231242	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	40337	42231242	16897741	16919	25070											
DMRTC2	63946	broad.mit.edu	37	chr19	42354385	42354385	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctccttgtttctagacactCaactctgatactccagccct	4	15	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42354385	A	A	42354385	4	1	9	1	0	0	0	0	0	1	0	0	4631	838	29	3	783	3	DMRTC2	19	42354385	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	123143	42354385	16774598	16920	25071											
ZNF574	64763	broad.mit.edu	37	chr19	42584884	42584884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcccctcgagccccacGggccactcgtgcaccagttg	10	20	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42584884	T	T	42584884	3	4	9	1	0	0	0	0	1	0	0	0	18133	1116	39	1	2128	1	ZNF574	19	42584884	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	230499	42584884	16544099	16921	25072											
LIPE	3991	broad.mit.edu	37	chr19	42912432	42912432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccgaaggacaccagccCaatggagatggtctgcagga	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42912432	A	A	42912432	3	1	9	1	0	0	0	0	1	0	0	0	8894	594	21	2	1800	2	LIPE	19	42912432	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	327548	42912432	16216551	16922	25073											
CEACAM1	634	broad.mit.edu	37	chr19	43031328	43031328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtatattgtctctcgacCgctgtttgcgggccctgggg	16	10	1	0	rs145087706		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43031328	A	A	43031328	3	1	9	1	0	0	0	0	1	0	0	0	3217	652	23	1	1420	1	CEACAM1	19	43031328	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	118896	43031328	16097655	16923	25074											
CEACAM8	1088	broad.mit.edu	37	chr19	43097824	43097824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattggggtatattgtctctCgattgctgtatgcaggccct	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43097824	A	A	43097824	3	1	9	1	0	0	0	0	1	0	0	0	3228	884	31	3	772	3	CEACAM8	19	43097824	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66496	43097824	16031159	16924	25075											
PSG3	5671	broad.mit.edu	37	chr19	43233294	43233294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagactttgactgtcatGgatttggagctttccatgcc	10	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43233294	T	T	43233294	2	4	9	1	0	0	0	0	0	0	0	1	12762	1335	47	2		2	PSG3	19	43233294	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	135470	43233294	15895689	16925	25076											
PSG8	440533	broad.mit.edu	37	chr19	43258649	43258649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagaatactgtgccggtGggttagagtccgcagaacag	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43258649	T	T	43258649	3	4	9	1	0	0	0	0	1	0	0	0	12767	1348	47	2	226	2	PSG8	19	43258649	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25355	43258649	15870334	16926	25077											
PSG8	440533	broad.mit.edu	37	chr19	43259286	43259286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttaccctgggactgaccGggaggctctgaccatttagc	12	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43259286	T	T	43259286	3	4	9	1	0	0	0	0	1	0	0	0	12767	1116	39	1	467	1	PSG8	19	43259286	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	637	43259286	15869697	16927	25078											
PSG8	440533	broad.mit.edu	37	chr19	43349188	43349188	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggacattcagggtgactGggttactgcggatgccacca	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43349188	T	T	43349188	1	4	9	0	1	0	0	0	0	0	0	0	12767	1363	47	2		2	PSG8	19	43349188	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	89902	43349188	15779795	16928	25079											
PSG1	5669	broad.mit.edu	37	chr19	43352175	43352175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaacagaagatagtcacGgaggagattcagggtgaatg	16	4	2	4	rs142275557	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43352175	T	T	43352175	1	4	9	0	1	0	0	0	0	0	0	0	12759	1131	39	1		1	PSG1	19	43352175	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2987	43352175	15776808	16929	25080											
PSG1	5669	broad.mit.edu	37	chr19	43382026	43382026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgaagtagaagtgacccCtgtcccccaacacccaggga	11	13	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43382026	A	A	43382026	1	1	9	0	1	0	0	0	0	0	0	0	12759	696	24	2		2	PSG1	19	43382026	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29851	43382026	15746957	16930	25081											
PSG6	5675	broad.mit.edu	37	chr19	43410973	43410973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatttgcttgtgcccatGggacacagtctgggaataca	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43410973	T	T	43410973	1	4	9	0	1	0	0	0	0	0	0	0	12765	1363	47	2		2	PSG6	19	43410973	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	28947	43410973	15718010	16931	25082											
PSG6	5675	broad.mit.edu	37	chr19	43411170	43411170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgatttgtagtaatttGggggataaagagcttttgtc	12	3	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43411170	T	T	43411170	3	4	9	1	0	0	0	0	1	0	0	0	12765	1357	47	2	210	2	PSG6	19	43411170	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	197	43411170	15717813	16932	25083											
PSG6	5675	broad.mit.edu	37	chr19	43415009	43415009	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagggcttgggagtctcCgctgtgcagaaaacagagag	16	7	1	2	rs150797701		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43415009	A	A	43415009	2	1	9	1	0	0	0	0	0	0	0	1	12765	666	23	1		1	PSG6	19	43415009	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3839	43415009	15713974	16933	25084											
PSG6	5675	broad.mit.edu	37	chr19	43420414	43420414	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattggaatatactgtttctCgtccactgtaggcaggccca	9	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43420414	A	A	43420414	3	1	9	1	0	0	0	0	1	0	0	0	12765	884	31	3	1076	3	PSG6	19	43420414	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5405	43420414	15708569	16934	25085											
PSG6	5675	broad.mit.edu	37	chr19	43420485	43420485	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatgtaatggtagaggtcCgtcatttgccctttgtacca	10	8	1	1	rs144793616	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43420485	A	A	43420485	2	1	9	1	0	0	0	0	0	0	0	1	12765	639	23	1		1	PSG6	19	43420485	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	71	43420485	15708498	16935	25086											
PSG7	5676	broad.mit.edu	37	chr19	43439580	43439580	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggtgaaggtgaaacgtcCagttactcctccagtcccat	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43439580	A	A	43439580	4	1	9	1	0	0	0	0	0	1	0	0	12766	603	21	2	873	2	PSG7	19	43439580	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19095	43439580	15689403	16936	25087											
PSG2	5670	broad.mit.edu	37	chr19	43579611	43579611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacaccaaatagaaagaGggtcctgttggtttcggaca	12	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43579611	T	T	43579611	3	4	9	1	0	0	0	0	1	0	0	0	12761	1000	35	2	415	2	PSG2	19	43579611	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	140031	43579611	15549372	16937	25088											
PSG5	5673	broad.mit.edu	37	chr19	43674282	43674282	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggaagacgtcctattcCtgaaggagctgtcatggaaa	13	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43674282	A	A	43674282	4	1	9	1	0	0	0	0	0	1	0	0	12764	690	24	2	38	2	PSG5	19	43674282	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94671	43674282	15454701	16938	25089											
PSG5	5673	broad.mit.edu	37	chr19	43680257	43680257	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacatccttattctccctGggttttgagttgttgatggt	10	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43680257	T	T	43680257	2	4	9	1	0	0	0	0	0	0	0	1	12764	1335	47	2		2	PSG5	19	43680257	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5975	43680257	15448726	16939	25090											
PSG4	5672	broad.mit.edu	37	chr19	43698653	43698653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccaagaatattgtgccCgtgggttagactcggcgaag	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43698653	A	A	43698653	3	1	9	1	0	0	0	0	1	0	0	0	12763	652	23	1	185	1	PSG4	19	43698653	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18396	43698653	15430330	16940	25091											
PSG4	5672	broad.mit.edu	37	chr19	43702149	43702149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaacagaggatactcacGgaggagattcagggtgactg	16	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43702149	T	T	43702149	3	4	9	1	0	0	0	0	1	0	0	0	12763	1130	39	1	566	1	PSG4	19	43702149	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3496	43702149	15426834	16941	25092											
PSG4	5672	broad.mit.edu	37	chr19	43702333	43702333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaccactggtagcttgcGgctggagtcgcaggatcaca	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43702333	T	T	43702333	2	4	9	1	0	0	0	0	0	0	0	1	12763	1103	39	1		1	PSG4	19	43702333	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	184	43702333	15426650	16942	25093											
PSG4	5672	broad.mit.edu	37	chr19	43709764	43709764	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgagtacggctgtcagCtgtgctgtccttcctccttc	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43709764	T	T	43709764	1	4	9	0	1	0	0	0	0	0	0	0	12763	812	28	4		4	PSG4	19	43709764	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	7431	43709764	15419219	16943	25094											
PSG9	5678	broad.mit.edu	37	chr19	43772147	43772147	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgtaatggtagaggtcCgtcatttcccctttgtacca	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43772147	A	A	43772147	2	1	9	1	0	0	0	0	0	0	0	1	12768	639	23	1		1	PSG9	19	43772147	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62383	43772147	15356836	16944	25095											
C19orf61	56006	broad.mit.edu	37	chr19	44237570	44237570	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagtcaggtggaagcccCgggaagacattgcattgtaa	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44237570	A	A	44237570	2	1	9	1	0	0	0	0	0	0	0	1	1962	639	23	1		1	C19orf61	19	44237570	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	465423	44237570	14891413	16945	25096											
C19orf61	56006	broad.mit.edu	37	chr19	44252867	44252867	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggggagaaatctgagtctGagtcccgttctttctctggt	13	8	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44252867	T	T	44252867	1	4	9	0	1	0	0	0	0	0	0	0	1962	1305	45	3		3	C19orf61	19	44252867	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15297	44252867	14876116	16946	25097											
ZNF283	284349	broad.mit.edu	37	chr19	44351959	44351959	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatactggtgagaaaccCtatgaatgcaaggaatgtgg	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44351959	A	A	44351959	2	1	9	1	0	0	0	0	0	0	0	1	17946	668	24	2		2	ZNF283	19	44351959	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	99092	44351959	14777024	16947	25098											
ZNF45	7596	broad.mit.edu	37	chr19	44423040	44423040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgaggagttatctctctGggttgccatcttcatcatcc	8	12	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44423040	T	T	44423040	3	4	9	1	0	0	0	0	1	0	0	0	18048	1357	47	2	1839	2	ZNF45	19	44423040	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	71081	44423040	14705943	16948	25099											
ZNF221	7638	broad.mit.edu	37	chr19	44469101	44469101	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtatgttggatattttaGgaggcagtgacattcaagga	12	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44469101	T	T	44469101	5	4	9	1	0	0	0	0	0	0	1	0	17901	1014	35	2	87	2	ZNF221	19	44469101	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	46061	44469101	14659882	16949	25100											
ZNF225	7768	broad.mit.edu	37	chr19	44622425	44622425	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccagaggaaactgtacCgagaagtgatgctggagaac	13	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44622425	A	A	44622425	2	1	9	1	0	0	0	0	0	0	0	1	17905	644	23	1		1	ZNF225	19	44622425	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	153324	44622425	14506558	16950	25101											
ZNF226	7769	broad.mit.edu	37	chr19	44680030	44680030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagaagggtgttgatccCatcggttggatttcacatca	11	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44680030	A	A	44680030	2	1	9	1	0	0	0	0	0	0	0	1	17906	581	21	2		2	ZNF226	19	44680030	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	57605	44680030	14448953	16951	25102											
ZNF227	7770	broad.mit.edu	37	chr19	44740716	44740716	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatcagagggtccacacGggagagaaaccccatatatg	10	11	2	2	rs28671410	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44740716	T	T	44740716	2	4	9	1	0	0	0	0	0	0	0	1	17907	1103	39	1		1	ZNF227	19	44740716	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	60686	44740716	14388267	16952	25103											
BCAM	4059	broad.mit.edu	37	chr19	45314567	45314567	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctggactgcacccctacGggaacccacgaccattatat	7	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45314567	T	T	45314567	2	4	9	1	0	0	0	0	0	0	0	1	1349	1103	39	1		1	BCAM	19	45314567	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	573851	45314567	13814416	16953	25104											
CLPTM1	1209	broad.mit.edu	37	chr19	45494600	45494600	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctggtactcctgggtgctCagcatgctctacggcttcct	12	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45494600	A	A	45494600	2	1	9	1	0	0	0	0	0	0	0	1	3586	813	29	3		3	CLPTM1	19	45494600	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	180033	45494600	13634383	16954	25105											
CLPTM1	1209	broad.mit.edu	37	chr19	45495627	45495627	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttgtcatcaagatgccCgttatgtaccggatcggctg	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45495627	A	A	45495627	2	1	9	1	0	0	0	0	0	0	0	1	3586	639	23	1		1	CLPTM1	19	45495627	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1027	45495627	13633356	16955	25106											
RELB	5971	broad.mit.edu	37	chr19	45540658	45540658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctcttgtcttcatcccCgtaggcccgttcctcccgcc	6	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45540658	A	A	45540658	1	1	9	0	1	0	0	0	0	0	0	0	13325	667	23	1		1	RELB	19	45540658	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	45031	45540658	13588325	16956	25107											
KLC3	147700	broad.mit.edu	37	chr19	45854648	45854648	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgctggccgcagcttcttGggaacagtgcaggagggatg	17	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45854648	T	T	45854648	1	4	9	0	1	0	0	0	0	0	0	0	8406	1363	47	2		2	KLC3	19	45854648	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	313990	45854648	13274335	16957	25108											
ERCC2	2068	broad.mit.edu	37	chr19	45872283	45872283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggactcagtccctgtccCgccccttcctttgtctgcct	8	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45872283	A	A	45872283	1	1	9	0	1	0	0	0	0	0	0	0	5255	667	23	1		1	ERCC2	19	45872283	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	17635	45872283	13256700	16958	25109											
CD3EAP	10849	broad.mit.edu	37	chr19	45911966	45911966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgggagtgctgttccCgtccaccaccaagaagagga	12	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45911966	A	A	45911966	3	1	9	1	0	0	0	0	1	0	0	0	3042	652	23	1	750	1	CD3EAP	19	45911966	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39683	45911966	13217017	16959	25110											
SNRPD2	6633	broad.mit.edu	37	chr19	46195089	46195089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccttcccacactcaatcGgtcaaatatccaccctcaac	2	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46195089	T	T	46195089	1	4	9	0	1	0	0	0	0	0	0	0	14979	1131	39	1		1	SNRPD2	19	46195089	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	283123	46195089	12933894	16960	25111											
SNRPD2	6633	broad.mit.edu	37	chr19	46195175	46195175	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacgctctccgttcactccCgtttcctccgcgttgctgct	7	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46195175	A	A	46195175	1	1	9	0	1	0	0	0	0	0	0	0	14979	667	23	1		1	SNRPD2	19	46195175	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	86	46195175	12933808	16961	25112											
SLC1A5	6510	broad.mit.edu	37	chr19	47278926	47278926	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgtgcttctcgactcCgtacggtccacgtaattttg	10	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47278926	A	A	47278926	2	1	9	1	0	0	0	0	0	0	0	1	14548	639	23	1		1	SLC1A5	19	47278926	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1083751	47278926	11850057	16962	25113											
ZC3H4	23211	broad.mit.edu	37	chr19	47572267	47572267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccttcctgacaggaaacCcaacctggaacaccccacca	6	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47572267	A	A	47572267	1	1	9	0	1	0	0	0	0	0	0	0	17696	638	22	2		2	ZC3H4	19	47572267	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	293341	47572267	11556716	16963	25114											
ZC3H4	23211	broad.mit.edu	37	chr19	47588354	47588354	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcgtcatcgttcattcCgcccttgttcatccctcctc	5	17	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47588354	A	A	47588354	4	1	9	1	0	0	0	0	0	1	0	0	17696	661	23	1	2877	1	ZC3H4	19	47588354	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16087	47588354	11540629	16964	25115											
ZC3H4	23211	broad.mit.edu	37	chr19	47588398	47588398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacctcggcctcggcccCgacccattcctttccctcga	7	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47588398	A	A	47588398	3	1	9	1	0	0	0	0	1	0	0	0	17696	652	23	1	2921	1	ZC3H4	19	47588398	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44	47588398	11540585	16965	25116											
ZC3H4	23211	broad.mit.edu	37	chr19	47597190	47597190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagcagttgaactcctccCggccccagagctcagcagtg	10	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47597190	A	A	47597190	1	1	9	0	1	0	0	0	0	0	0	0	17696	667	23	1		1	ZC3H4	19	47597190	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8792	47597190	11531793	16966	25117											
C5AR1	728	broad.mit.edu	37	chr19	47823716	47823716	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacactttcatcctgctcCggacgtggagccgcagggcc	12	14	1	0	rs146163744		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47823716	A	A	47823716	2	1	9	1	0	0	0	0	0	0	0	1	2304	643	23	1		1	C5AR1	19	47823716	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	226526	47823716	11305267	16967	25118											
KPTN	11133	broad.mit.edu	37	chr19	47984058	47984058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggaagaggttttccacGggctgttcctcaaactgatg	12	9	2	2	rs145347349	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47984058	T	T	47984058	2	4	9	1	0	0	0	0	0	0	0	1	8508	1103	39	1		1	KPTN	19	47984058	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	160342	47984058	11144925	16968	25119											
KPTN	11133	broad.mit.edu	37	chr19	47986420	47986420	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcaggggacactcactcCgcatggcacagctggaacgg	14	13	1	0	rs138039511	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47986420	A	A	47986420	2	1	9	1	0	0	0	0	0	0	0	1	8508	639	23	1		1	KPTN	19	47986420	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2362	47986420	11142563	16969	25120											
SEPW1	6415	broad.mit.edu	37	chr19	48284455	48284455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggtatgtctgtctgtcCgtcctgcctggttttggggc	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48284455	A	A	48284455	1	1	9	0	1	0	0	0	0	0	0	0	14185	667	23	1		1	SEPW1	19	48284455	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	298035	48284455	10844528	16970	25121											
PLA2G4C	8605	broad.mit.edu	37	chr19	48578088	48578088	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggtcctggtccaattctcGagcatctcagtcagccaggt	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48578088	T	T	48578088	2	4	9	1	0	0	0	0	0	0	0	1	12098	1045	37	3		3	PLA2G4C	19	48578088	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	293633	48578088	10550895	16971	25122											
LIG1	3978	broad.mit.edu	37	chr19	48631178	48631178	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgctaccttgcgtttgcGggtggtgagcacttggaatg	15	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48631178	C	C	48631178	3	2	9	1	0	0	0	0	1	0	0	0	8853	1116	39	4	874	4	LIG1	19	48631178	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	53090	48631178	10497805	16972	25123											
LIG1	3978	broad.mit.edu	37	chr19	48652999	48652999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcccgaagaacctttcCagacctggacactgactcac	6	16	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48652999	A	A	48652999	1	1	9	0	1	0	0	0	0	0	0	0	8853	609	21	2		2	LIG1	19	48652999	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21821	48652999	10475984	16973	25124											
CARD8	22900	broad.mit.edu	37	chr19	48714991	48714991	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattctgctgtctaagataGgacacgaggtaagggtccct	11	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48714991	T	T	48714991	2	4	9	1	0	0	0	0	0	0	0	1	2677	987	35	2		2	CARD8	19	48714991	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	61992	48714991	10413992	16974	25125											
ZNF114	163071	broad.mit.edu	37	chr19	48789961	48789961	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgttgtgcagaagaagccCtacgaatgtgaagaatgtgg	13	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48789961	A	A	48789961	2	1	9	1	0	0	0	0	0	0	0	1	17842	668	24	2		2	ZNF114	19	48789961	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	74970	48789961	10339022	16975	25126											
FUT2	2524	broad.mit.edu	37	chr19	49206904	49206904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggccctggactggttcCgagctcgctacagctccctc	11	16	0	0	rs144566043	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49206904	A	A	49206904	2	1	9	1	0	0	0	0	0	0	0	1	6164	644	23	1		1	FUT2	19	49206904	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	416943	49206904	9922079	16976	25127											
FUT1	2523	broad.mit.edu	37	chr19	49253964	49253964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacactctgcgcctcttccCgaaggtggtcgtgcagggtg	14	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49253964	A	A	49253964	3	1	9	1	0	0	0	0	1	0	0	0	6161	652	23	1	526	1	FUT1	19	49253964	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47060	49253964	9875019	16977	25128											
RUVBL2	10856	broad.mit.edu	37	chr19	49518860	49518860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtggatgacatcaagcGggtctactcactcttcctgg	12	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49518860	T	T	49518860	3	4	9	1	0	0	0	0	1	0	0	0	13864	1116	39	1	1337	1	RUVBL2	19	49518860	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	264896	49518860	9610123	16978	25129											
CGB	1082	broad.mit.edu	37	chr19	49551700	49551700	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggccttcccatcccacgtGgtacaccacccacaaagacc	6	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49551700	A	A	49551700	1	1	9	0	1	0	0	0	0	0	0	0	3326	1363	47	4		4	CGB	19	49551700	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32840	49551700	9577283	16979	25130											
SNRNP70	6625	broad.mit.edu	37	chr19	49589807	49589807	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggcattgcgccgtacattCgagagtttgaggtgagttca	14	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49589807	A	A	49589807	2	1	9	1	0	0	0	0	0	0	0	1	14972	876	31	3		3	SNRNP70	19	49589807	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38107	49589807	9539176	16980	25131											
TRPM4	54795	broad.mit.edu	37	chr19	49714394	49714394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcaggggtcccatctccCgctctgacattcctcccatt	9	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49714394	A	A	49714394	1	1	9	0	1	0	0	0	0	0	0	0	16713	667	23	1		1	TRPM4	19	49714394	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	124587	49714394	9414589	16981	25132											
SLC6A16	28968	broad.mit.edu	37	chr19	49814632	49814632	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactctctggggcagctccCgcttctgcaagggagggttc	14	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49814632	A	A	49814632	1	1	9	0	1	0	0	0	0	0	0	0	14793	667	23	1		1	SLC6A16	19	49814632	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	100238	49814632	9314351	16982	25133											
TEAD2	8463	broad.mit.edu	37	chr19	49850500	49850500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacgatcatatagctctcGgaggccaccctttttctcag	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49850500	T	T	49850500	2	4	9	1	0	0	0	0	0	0	0	1	15861	1124	39	1		1	TEAD2	19	49850500	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	35868	49850500	9278483	16983	25134											
TEAD2	8463	broad.mit.edu	37	chr19	49862706	49862706	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagacctgttttcgagttcGggtcttccccgttctcagct	10	13	2	1	rs146676889		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49862706	T	T	49862706	2	4	9	1	0	0	0	0	0	0	0	1	15861	1124	39	1		1	TEAD2	19	49862706	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12206	49862706	9266277	16984	25135											
PIH1D1	55011	broad.mit.edu	37	chr19	49950317	49950317	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcggccaagaggaggtcGggggcttccagccacaggtt	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49950317	T	T	49950317	2	4	9	1	0	0	0	0	0	0	0	1	12001	1103	39	1		1	PIH1D1	19	49950317	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	87611	49950317	9178666	16985	25136											
PIH1D1	55011	broad.mit.edu	37	chr19	49951149	49951149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatggtgatcacgagctccCgcaagaaatcgctgttctgg	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49951149	A	A	49951149	3	1	9	1	0	0	0	0	1	0	0	0	12001	652	23	1	476	1	PIH1D1	19	49951149	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	832	49951149	9177834	16986	25137											
ALDH16A1	126133	broad.mit.edu	37	chr19	49968903	49968903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgccccagaggctcacGggagccaaggcagtcttccc	15	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49968903	T	T	49968903	1	4	9	0	1	0	0	0	0	0	0	0	488	1131	39	1		1	ALDH16A1	19	49968903	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	17754	49968903	9160080	16987	25138											
RCN3	57333	broad.mit.edu	37	chr19	50031812	50031812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatccccagacgcaggccCtcatggccaggggagggtgc	15	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50031812	A	A	50031812	3	1	9	1	0	0	0	0	1	0	0	0	13289	681	24	2	85	2	RCN3	19	50031812	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	62909	50031812	9097171	16988	25139											
RCN3	57333	broad.mit.edu	37	chr19	50040426	50040426	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacagccttcctgcacccCgaggagttccctcacatgcg	9	17	1	1	rs112559991	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50040426	A	A	50040426	2	1	9	1	0	0	0	0	0	0	0	1	13289	639	23	1		1	RCN3	19	50040426	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8614	50040426	9088557	16989	25140											
IRF3	3661	broad.mit.edu	37	chr19	50163050	50163050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggaggcaccccctaccCgggccatttctaccaaggcc	12	16	1	0	rs147691115	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50163050	A	A	50163050	3	1	9	1	0	0	0	0	1	0	0	0	7901	652	23	1	148	1	IRF3	19	50163050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122624	50163050	8965933	16990	25141											
BCL2L12	83596	broad.mit.edu	37	chr19	50170460	50170460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaagccggcagaacacGggataaggtgctagtttaag	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50170460	T	T	50170460	1	4	9	0	1	0	0	0	0	0	0	0	1375	1131	39	1		1	BCL2L12	19	50170460	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7410	50170460	8958523	16991	25142											
PNKP	11284	broad.mit.edu	37	chr19	50367614	50367614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagtgggaaagaccttcCcagagcgtgtggtgatgagc	16	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50367614	A	A	50367614	3	1	9	1	0	0	0	0	1	0	0	0	12242	623	22	2	1072	2	PNKP	19	50367614	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	197154	50367614	8761369	16992	25143											
PNKP	11284	broad.mit.edu	37	chr19	50367639	50367639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtggtgatgagcgtccCgtccagatcaaagccagcca	13	12	1	3	rs142770020		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50367639	A	A	50367639	3	1	9	1	0	0	0	0	1	0	0	0	12242	652	23	1	1097	1	PNKP	19	50367639	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25	50367639	8761344	16993	25144											
VRK3	51231	broad.mit.edu	37	chr19	50512426	50512426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgtggcagttttgtccCaaagatcatcagatgaccta	11	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50512426	A	A	50512426	1	1	9	0	1	0	0	0	0	0	0	0	17348	609	21	2		2	VRK3	19	50512426	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	144787	50512426	8616557	16994	25145											
VRK3	51231	broad.mit.edu	37	chr19	50519284	50519284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgctctggttcttaccttGgaaggatgacacatgtggat	11	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50519284	T	T	50519284	3	4	9	1	0	0	0	0	1	0	0	0	17348	1357	47	2	1336	2	VRK3	19	50519284	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6858	50519284	8609699	16995	25146											
C19orf41	126123	broad.mit.edu	37	chr19	50658008	50658008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggtggggaaacagcccCgacctccacgtcaccacccc	12	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50658008	A	A	50658008	1	1	9	0	1	0	0	0	0	0	0	0	1943	667	23	1		1	C19orf41	19	50658008	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	138724	50658008	8470975	16996	25147											
NR1H2	7376	broad.mit.edu	37	chr19	50881460	50881460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaaagaagggcccagcccCgaagatgctgggccacgagc	15	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50881460	A	A	50881460	3	1	9	1	0	0	0	0	1	0	0	0	10712	652	23	1	246	1	NR1H2	19	50881460	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	223452	50881460	8247523	16997	25148											
POLD1	5424	broad.mit.edu	37	chr19	50906782	50906782	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatccgtatcatggacccCgacgtgatcaccggttacaa	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50906782	A	A	50906782	2	1	9	1	0	0	0	0	0	0	0	1	12285	639	23	1		1	POLD1	19	50906782	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25322	50906782	8222201	16998	25149											
POLD1	5424	broad.mit.edu	37	chr19	50910170	50910170	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctacctcaccctgaccccCacttccttctcctgctccac	4	22	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50910170	T	T	50910170	1	4	9	0	1	0	0	0	0	0	0	0	12285	609	21	4		4	POLD1	19	50910170	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3388	50910170	8218813	16999	25150											
SYT3	84258	broad.mit.edu	37	chr19	51140463	51140463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctgagcagttctgctcCgagtctcctggccatagtgc	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51140463	A	A	51140463	1	1	9	0	1	0	0	0	0	0	0	0	15594	667	23	1		1	SYT3	19	51140463	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	230293	51140463	7988520	17000	25151											
SIGLEC9	27180	broad.mit.edu	37	chr19	51628419	51628419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcatggctactggttccGggaaggggccaatacagacc	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51628419	T	T	51628419	3	4	9	1	0	0	0	0	1	0	0	0	14428	1116	39	1	190	1	SIGLEC9	19	51628419	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	487956	51628419	7500564	17001	25152											
NKG7	4818	broad.mit.edu	37	chr19	51874940	51874940	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaagggctggaagggcGggcagatgtgggaccagact	21	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51874940	T	T	51874940	1	4	9	0	1	0	0	0	0	0	0	0	10538	1131	39	1		1	NKG7	19	51874940	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	246521	51874940	7254043	17002	25153											
SIGLEC10	89790	broad.mit.edu	37	chr19	51917973	51917973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctacatacagatgccacGggtctgctgtgtccctccaa	9	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51917973	T	T	51917973	1	4	9	0	1	0	0	0	0	0	0	0	14419	1131	39	1		1	SIGLEC10	19	51917973	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	43033	51917973	7211010	17003	25154											
ZNF577	84765	broad.mit.edu	37	chr19	52375975	52375975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcttgtttaacaatggcGgggttcctgaggaaggcatt	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52375975	T	T	52375975	3	4	9	1	0	0	0	0	1	0	0	0	18136	1116	39	1	193	1	ZNF577	19	52375975	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	458002	52375975	6753008	17004	25155											
ZNF649	65251	broad.mit.edu	37	chr19	52393988	52393988	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagctgtgacttgctgtGgaaggattttccaccttcac	9	10	1	1	rs144803970	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52393988	T	T	52393988	2	4	9	1	0	0	0	0	0	0	0	1	18191	1335	47	2		2	ZNF649	19	52393988	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	18013	52393988	6734995	17005	25156											
ZNF649	65251	broad.mit.edu	37	chr19	52394114	52394114	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccatagggtctctctccCgtgtgagttctgtgatgtac	11	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52394114	A	A	52394114	2	1	9	1	0	0	0	0	0	0	0	1	18191	639	23	1		1	ZNF649	19	52394114	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	126	52394114	6734869	17006	25157											
ZNF613	79898	broad.mit.edu	37	chr19	52447673	52447673	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataatgaaatgaacttcccCgaaggtggaaattctgtgaa	9	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52447673	A	A	52447673	2	1	9	1	0	0	0	0	0	0	0	1	18165	639	23	1		1	ZNF613	19	52447673	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	53559	52447673	6681310	17007	25158											
ZNF615	284370	broad.mit.edu	37	chr19	52497701	52497701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacttgaggaaggctttccCacattcactgcatacatggg	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52497701	A	A	52497701	3	1	9	1	0	0	0	0	1	0	0	0	18167	594	21	2	1571	2	ZNF615	19	52497701	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	50028	52497701	6631282	17008	25159											
ZNF808	388558	broad.mit.edu	37	chr19	53058551	53058551	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaatcttacaaatgtacGgtttgtgacaaggctttcgt	10	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53058551	T	T	53058551	2	4	9	1	0	0	0	0	0	0	0	1	18302	1103	39	1		1	ZNF808	19	53058551	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	560850	53058551	6070432	17009	25160											
ZNF83	55769	broad.mit.edu	37	chr19	53156958	53156958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagagatgacttgtgacCgaaggtcttggaacactcat	11	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53156958	A	A	53156958	1	1	9	0	1	0	0	0	0	0	0	0	18312	667	23	1		1	ZNF83	19	53156958	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	98407	53156958	5972025	17010	25161											
ZNF611	81856	broad.mit.edu	37	chr19	53209683	53209683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaattcaggggattattccCatagttattagaaatctggg	10	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53209683	A	A	53209683	3	1	9	1	0	0	0	0	1	0	0	0	18164	594	21	2	1496	2	ZNF611	19	53209683	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	52725	53209683	5919300	17011	25162											
ZNF611	81856	broad.mit.edu	37	chr19	53217179	53217179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacaaaacccatgtatgGggcaaaatcacaaaagagga	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53217179	T	T	53217179	1	4	9	0	1	0	0	0	0	0	0	0	18164	1247	43	2		2	ZNF611	19	53217179	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7496	53217179	5911804	17012	25163											
ZNF816A	125893	broad.mit.edu	37	chr19	53454046	53454046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtctacgatggcatctaaGggatgacttctcactgaagg	11	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53454046	T	T	53454046	3	4	9	1	0	0	0	0	1	0	0	0	18306	1000	35	2	977	2	ZNF816A	19	53454046	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	236867	53454046	5674937	17013	25164											
ZNF816A	125893	broad.mit.edu	37	chr19	53459325	53459325	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttgctcttcttggtGgcttcctcacgtaacatgag	8	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53459325	T	T	53459325	2	4	9	1	0	0	0	0	0	0	0	1	18306	1335	47	2		2	ZNF816A	19	53459325	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5279	53459325	5669658	17014	25165											
ZNF347	84671	broad.mit.edu	37	chr19	53652555	53652555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacaaagtcctctgagcGgggtccaggcatgtccactc	11	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53652555	T	T	53652555	2	4	9	1	0	0	0	0	0	0	0	1	17987	1103	39	1		1	ZNF347	19	53652555	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	193230	53652555	5476428	17015	25166											
ZNF845	91664	broad.mit.edu	37	chr19	53856407	53856407	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataaggcaattcatagtGgagagaaaccttacaagtgt	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53856407	T	T	53856407	4	4	9	1	0	0	0	0	0	1	0	0	18320	1349	47	2	2489	2	ZNF845	19	53856407	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	203852	53856407	5272576	17016	25167											
ZNF813	126017	broad.mit.edu	37	chr19	53983134	53983134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctgaagaaaagtaccCtcaaaaagaagacaaatgtg	9	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53983134	A	A	53983134	1	1	9	0	1	0	0	0	0	0	0	0	18304	696	24	2		2	ZNF813	19	53983134	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	126727	53983134	5145849	17017	25168											
ZNF813	126017	broad.mit.edu	37	chr19	53994583	53994583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggcaagacctttagtcGgaagtcatcccttacatgcc	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53994583	T	T	53994583	3	4	9	1	0	0	0	0	1	0	0	0	18304	1116	39	1	1107	1	ZNF813	19	53994583	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11449	53994583	5134400	17018	25169											
PRKCG	5582	broad.mit.edu	37	chr19	54406344	54406344	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagatcattgcctaccagccCtatgggaagtctgtcgattg	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54406344	A	A	54406344	2	1	9	1	0	0	0	0	0	0	0	1	12618	668	24	2		2	PRKCG	19	54406344	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	411761	54406344	4722639	17019	25170											
LILRB2	10288	broad.mit.edu	37	chr19	54780647	54780647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcggcccacagggtttccCcttccctactcactcgatgt	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54780647	A	A	54780647	1	1	9	0	1	0	0	0	0	0	0	0	8863	638	22	2		2	LILRB2	19	54780647	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	374303	54780647	4348336	17020	25171											
LILRB2	10288	broad.mit.edu	37	chr19	54783018	54783018	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaggcttccccacaaaCcctccctctcccccggtgcc	5	24	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54783018	T	T	54783018	1	4	9	0	1	0	0	0	0	0	0	0	8863	522	18	4		4	LILRB2	19	54783018	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2371	54783018	4345965	17021	25172											
LAIR2	3904	broad.mit.edu	37	chr19	55021799	55021799	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaggagaaatggcctccCgtcttgtgaacttcaatggg	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55021799	A	A	55021799	1	1	9	0	1	0	0	0	0	0	0	0	8675	667	23	1		1	LAIR2	19	55021799	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	238781	55021799	4107184	17022	25173											
KIR2DL3	3804	broad.mit.edu	37	chr19	55278484	55278484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagctcttttgttgacttcCgtctcctacacatgctgctg	8	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55278484	A	A	55278484	1	1	9	0	1	0	0	0	0	0	0	0	8388	667	23	1		1	KIR2DL3	19	55278484	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	256685	55278484	3850499	17023	25174											
KIR2DL3	3804	broad.mit.edu	37	chr19	55278753	55278753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaggcccaagacaccccCaacagataccagagtgtaca	8	14	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55278753	A	A	55278753	1	1	9	0	1	0	0	0	0	0	0	0	8388	609	21	2		2	KIR2DL3	19	55278753	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	269	55278753	3850230	17024	25175											
NCR1	9437	broad.mit.edu	37	chr19	55420752	55420752	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacgtacagcgcggataCgggaaggtccaggcggagtt	16	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55420752	A	A	55420752	4	1	9	1	0	0	0	0	0	1	0	0	10332	547	19	3	518	3	NCR1	19	55420752	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	141999	55420752	3708231	17025	25176											
NLRP2	55655	broad.mit.edu	37	chr19	55494710	55494710	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaagactcaggaacccCgacctgatccaagcaggcta	10	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55494710	A	A	55494710	2	1	9	1	0	0	0	0	0	0	0	1	10572	639	23	1		1	NLRP2	19	55494710	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	73958	55494710	3634273	17026	25177											
GP6	51206	broad.mit.edu	37	chr19	55539162	55539162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccgagtctgacactgtaGggttacgtcccctcctgacg	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55539162	T	T	55539162	3	4	9	1	0	0	0	0	1	0	0	0	6649	991	35	2	1488	2	GP6	19	55539162	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44452	55539162	3589821	17027	25178											
TNNT1	7138	broad.mit.edu	37	chr19	55653324	55653324	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagaccatgagtggccCgacctccctgagccacctcc	9	18	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55653324	A	A	55653324	1	1	9	0	1	0	0	0	0	0	0	0	16453	667	23	1		1	TNNT1	19	55653324	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	114162	55653324	3475659	17028	25179											
PTPRH	5794	broad.mit.edu	37	chr19	55702884	55702884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacctaaagaccagatccCtgagttctggtttctgctgc	8	13	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55702884	A	A	55702884	3	1	9	1	0	0	0	0	1	0	0	0	12911	681	24	2	1014	2	PTPRH	19	55702884	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49560	55702884	3426099	17029	25180											
PTPRH	5794	broad.mit.edu	37	chr19	55711727	55711727	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggtatttgttgtgtttcGggtctctgtgccaccaccgt	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55711727	T	T	55711727	2	4	9	1	0	0	0	0	0	0	0	1	12911	1124	39	1		1	PTPRH	19	55711727	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	8843	55711727	3417256	17030	25181											
PTPRH	5794	broad.mit.edu	37	chr19	55718096	55718096	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacagagctatttactcCgtctttctccacccacacag	4	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55718096	A	A	55718096	4	1	9	1	0	0	0	0	0	1	0	0	12911	661	23	1	3106	1	PTPRH	19	55718096	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6369	55718096	3410887	17031	25182											
BRSK1	84446	broad.mit.edu	37	chr19	55798589	55798589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgaccctcaggtggagcGggagatcgccatcctgaagc	13	12	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55798589	T	T	55798589	3	4	9	1	0	0	0	0	1	0	0	0	1532	1116	39	1	249	1	BRSK1	19	55798589	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	80493	55798589	3330394	17032	25183											
NLRP9	338321	broad.mit.edu	37	chr19	56220276	56220276	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactacttcagggtgttcccCatcagaggagcacacccctg	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56220276	A	A	56220276	1	1	9	0	1	0	0	0	0	0	0	0	10579	609	21	2		2	NLRP9	19	56220276	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	421687	56220276	2908707	17033	25184											
NLRP11	204801	broad.mit.edu	37	chr19	56307504	56307504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacacagtatgttcatccCgtcgctcctcagcggattgc	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56307504	A	A	56307504	3	1	9	1	0	0	0	0	1	0	0	0	10568	652	23	1	837	1	NLRP11	19	56307504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	87228	56307504	2821479	17034	25185											
NLRP11	204801	broad.mit.edu	37	chr19	56320318	56320318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcacaaattcttcttccCgattctcatagagacagtaa	4	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56320318	A	A	56320318	3	1	9	1	0	0	0	0	1	0	0	0	10568	652	23	1	1475	1	NLRP11	19	56320318	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12814	56320318	2808665	17035	25186											
NLRP4	147945	broad.mit.edu	37	chr19	56379135	56379135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctggccttctaaccaaCaacaagaagctgacgtatct	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56379135	A	A	56379135	3	1	9	1	0	0	0	0	1	0	0	0	10574	477	17	3	2265	3	NLRP4	19	56379135	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58817	56379135	2749848	17036	25187											
NLRP8	126205	broad.mit.edu	37	chr19	56490815	56490815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccatggcttccatgctcCgcaaaaaccaacatctgaga	8	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56490815	A	A	56490815	3	1	9	1	0	0	0	0	1	0	0	0	10578	652	23	1	2966	1	NLRP8	19	56490815	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	111680	56490815	2638168	17037	25188											
NLRP5	126206	broad.mit.edu	37	chr19	56545002	56545002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaacttgggaggcaccCacctgaaggaagaggatgta	12	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56545002	A	A	56545002	3	1	9	1	0	0	0	0	1	0	0	0	10575	594	21	2	2576	2	NLRP5	19	56545002	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	54187	56545002	2583981	17038	25189											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701831	56701831	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagcatctcctctgttccCgctgtgagtcaaagcttctc	8	14	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701831	A	A	56701831	3	1	9	1	0	0	0	0	1	0	0	0	18368	652	23	1	638	1	ZSCAN5B	19	56701831	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	156829	56701831	2427152	17039	25190											
ZNF582	147948	broad.mit.edu	37	chr19	56896431	56896431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcattcccaatcatcttGgaaacttgaacactcaagac	5	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56896431	T	T	56896431	3	4	9	1	0	0	0	0	1	0	0	0	18141	1357	47	2	1202	2	ZNF582	19	56896431	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	194600	56896431	2232552	17040	25191											
ZNF583	147949	broad.mit.edu	37	chr19	56935552	56935552	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctatagtggatctcttactCtacatcagagaattcatact	6	9	4	1	rs148697800		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56935552	A	A	56935552	3	1	9	1	0	0	0	0	1	0	0	0	18142	912	32	3	1539	3	ZNF583	19	56935552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39121	56935552	2193431	17041	25192											
ZNF471	57573	broad.mit.edu	37	chr19	57036688	57036688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagctcgggttcatccCgtactgtacatcagagaatt	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57036688	A	A	57036688	3	1	9	1	0	0	0	0	1	0	0	0	18057	652	23	1	1266	1	ZNF471	19	57036688	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101136	57036688	2092295	17042	25193											
ZNF71	58491	broad.mit.edu	37	chr19	57133474	57133474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagccgtacgtgtgcccCgagtgcgggcgagccttcag	16	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57133474	A	A	57133474	2	1	9	1	0	0	0	0	0	0	0	1	18242	639	23	1		1	ZNF71	19	57133474	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	96786	57133474	1995509	17043	25194											
PEG3	5178	broad.mit.edu	37	chr19	57324993	57324993	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggattctctgtggtttGgtaagggtcaagtcctaggt	14	5	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57324993	T	T	57324993	1	4	9	0	1	0	0	0	0	0	0	0	11814	1363	47	2		2	PEG3	19	57324993	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	191519	57324993	1803990	17044	25195											
PEG3	5178	broad.mit.edu	37	chr19	57326397	57326397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagaatgtgtgtactccCgactgtcaaccaggcacttc	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57326397	A	A	57326397	3	1	9	1	0	0	0	0	1	0	0	0	11814	652	23	1	1357	1	PEG3	19	57326397	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1404	57326397	1802586	17045	25196											
PEG3	5178	broad.mit.edu	37	chr19	57333027	57333027	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgagcatacctgagatcGggactcataagccctggagt	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57333027	T	T	57333027	2	4	9	1	0	0	0	0	0	0	0	1	11814	1124	39	1		1	PEG3	19	57333027	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6630	57333027	1795956	17046	25197											
ZIM3	114026	broad.mit.edu	37	chr19	57647092	57647092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaagcttccacttctcccCgaatgctcttccacagctat	4	16	3	0	rs35202951	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57647092	A	A	57647092	3	1	9	1	0	0	0	0	1	0	0	0	17811	652	23	1	809	1	ZIM3	19	57647092	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	314065	57647092	1481891	17047	25198											
ZNF543	125919	broad.mit.edu	37	chr19	57839258	57839258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagggataggcccccagcGggggaagctgctggagaaaa	16	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57839258	T	T	57839258	3	4	9	1	0	0	0	0	1	0	0	0	18103	1116	39	1	442	1	ZNF543	19	57839258	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	192166	57839258	1289725	17048	25199											
ZNF304	57343	broad.mit.edu	37	chr19	57869167	57869167	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acactggagaaagagctcacGagtgcaacagttttggtggc	13	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57869167	T	T	57869167	4	4	9	1	0	0	0	0	0	1	0	0	17959	1059	37	3	1940	3	ZNF304	19	57869167	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	29909	57869167	1259816	17049	25200											
ZNF548	147694	broad.mit.edu	37	chr19	57909931	57909931	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagacatgtggcccaccCttgaaagacattctgtgcct	10	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57909931	A	A	57909931	2	1	9	1	0	0	0	0	0	0	0	1	18107	668	24	2		2	ZNF548	19	57909931	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	40764	57909931	1219052	17050	25201											
ZNF419	79744	broad.mit.edu	37	chr19	58003608	58003608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtggagctcagggaggtGtgaactcagggatggattca	18	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58003608	T	T	58003608	1	4	9	0	1	0	0	0	0	0	0	0	18023	1392	48	3		3	ZNF419	19	58003608	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	93677	58003608	1125375	17051	25202											
ZNF550	162972	broad.mit.edu	37	chr19	58059155	58059155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcaaggctcactttccCaagatgggtctccttgtgga	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58059155	A	A	58059155	3	1	9	1	0	0	0	0	1	0	0	0	18109	594	21	2	815	2	ZNF550	19	58059155	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	55547	58059155	1069828	17052	25203											
ZNF134	7693	broad.mit.edu	37	chr19	58132703	58132703	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catatgagtgcagtgaatgtGggaaggcctacagcttaagc	13	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58132703	C	C	58132703	3	2	9	1	0	0	0	0	1	0	0	0	17850	1348	47	4	1222	4	ZNF134	19	58132703	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	73548	58132703	996280	17053	25204											
ZNF551	90233	broad.mit.edu	37	chr19	58196774	58196774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggccctagcatccctcCgagtgtctgcttttcttttt	8	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58196774	A	A	58196774	1	1	9	0	1	0	0	0	0	0	0	0	18110	667	23	1		1	ZNF551	19	58196774	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	64071	58196774	932209	17054	25205											
ZNF671	79891	broad.mit.edu	37	chr19	58231722	58231722	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaaattcccaatggcGggtaaggttcagcctccagg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58231722	T	T	58231722	1	4	9	0	1	0	0	0	0	0	0	0	18205	1131	39	1		1	ZNF671	19	58231722	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	34948	58231722	897261	17055	25206											
ZNF671	79891	broad.mit.edu	37	chr19	58232163	58232163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttggctaaaggccttccCacattcactgcactcataag	7	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58232163	A	A	58232163	3	1	9	1	0	0	0	0	1	0	0	0	18205	594	21	2	317	2	ZNF671	19	58232163	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	441	58232163	896820	17056	25207											
ZNF417	147687	broad.mit.edu	37	chr19	58420382	58420382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctggtgttcagtgaggtGggatctgtacctaaatgatt	12	6	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58420382	T	T	58420382	3	4	9	1	0	0	0	0	1	0	0	0	18021	1348	47	2	467	2	ZNF417	19	58420382	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	188219	58420382	708601	17057	25208											
ZNF606	80095	broad.mit.edu	37	chr19	58489718	58489718	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctggtgttgaagtagggctGagtgaccactaaaggctttt	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58489718	T	T	58489718	4	4	9	1	0	0	0	0	0	1	0	0	18159	1294	45	3	52	3	ZNF606	19	58489718	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	69336	58489718	639265	17058	25209											
ZNF606	80095	broad.mit.edu	37	chr19	58490275	58490275	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttatatggtttctctccCgtgtgagttctctgatgggc	11	9	2	2	rs148159417		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58490275	A	A	58490275	2	1	9	1	0	0	0	0	0	0	0	1	18159	639	23	1		1	ZNF606	19	58490275	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	557	58490275	638708	17059	25210											
ZNF274	10782	broad.mit.edu	37	chr19	58697119	58697119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaacactgggttttacccCggaagagtggggactgctgg	15	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58697119	A	A	58697119	3	1	9	1	0	0	0	0	1	0	0	0	17935	652	23	1	80	1	ZNF274	19	58697119	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	206844	58697119	431864	17060	25211											
ZNF8	7554	broad.mit.edu	37	chr19	58797099	58797099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaaccagtgaccttccGggatgtggctgtggacttta	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58797099	T	T	58797099	3	4	9	1	0	0	0	0	1	0	0	0	18296	1116	39	1	89	1	ZNF8	19	58797099	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99980	58797099	331884	17061	25212											
CHMP2A	27243	broad.mit.edu	37	chr19	59065564	59065564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcgtcttccggcgccCgaacaataggtccatgatgg	12	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59065564	A	A	59065564	3	1	9	1	0	0	0	0	1	0	0	0	3385	652	23	1	672	1	CHMP2A	19	59065564	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	268465	59065564	63419	17062	25213											
DEFB125	245938	broad.mit.edu	37	chr20	68397	68397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctgtgggttgctaactcGggtgaccaaaggtaatggaa	13	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68397	T	T	68397	3	4	9	1	0	0	0	0	1	0	0	0	4450	1116	39	1	49	1	DEFB125	20	68397	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08		68397	62957123	17063	25214											
DEFB125	245938	broad.mit.edu	37	chr20	76718	76718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatgtttagatactgaaaGgtacatacttctttgtagga	9	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76718	T	T	76718	3	4	9	1	0	0	0	0	1	0	0	0	4450	1000	35	2	137	2	DEFB125	20	76718	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8321	76718	62948802	17064	25215											
DEFB125	245938	broad.mit.edu	37	chr20	77050	77050	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctcagacagctcttactCataattaattaacatttact	2	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77050	A	A	77050	3	1	9	1	0	0	0	0	1	0	0	0	4450	826	29	3	469	3	DEFB125	20	77050	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	332	77050	62948470	17065	25216											
C20orf96	140680	broad.mit.edu	37	chr20	257768	257768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctttctgcgcatctcacCgaggtcatccagctcatcct	7	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	257768	A	A	257768	3	1	9	1	0	0	0	0	1	0	0	0	2144	652	23	1	365	1	C20orf96	20	257768	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	180718	257768	62767752	17066	25217											
C20orf96	140680	broad.mit.edu	37	chr20	271290	271290	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgcgagtctgtgagaccCtgatcttctggtataactac	10	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	271290	A	A	271290	1	1	9	1	0	0	0	0	0	0	0	0	2144	696	24	2		2	C20orf96	20	271290	Translation_Start_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	13522	271290	62754230	17067	25218											
TRIB3	57761	broad.mit.edu	37	chr20	372008	372008	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagcatgtggctcggccCactgaggtcctggctggtac	13	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	372008	A	A	372008	2	1	9	1	0	0	0	0	0	0	0	1	16608	581	21	2		2	TRIB3	20	372008	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	100718	372008	62653512	17068	25219											
RBCK1	10616	broad.mit.edu	37	chr20	398514	398514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctatctgctgtcagccCgcaacacctccctcaaccct	4	20	4	0	rs146325218		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	398514	A	A	398514	3	1	9	1	0	0	0	0	1	0	0	0	13215	652	23	1	433	1	RBCK1	20	398514	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	26506	398514	62627006	17069	25220											
RBCK1	10616	broad.mit.edu	37	chr20	402852	402852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaacacctactcgtgctcGggcaagctgctggagaggga	14	11	0	1	rs146181107		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	402852	T	T	402852	2	4	9	1	0	0	0	0	0	0	0	1	13215	1103	39	1		1	RBCK1	20	402852	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4338	402852	62622668	17070	25221											
RBCK1	10616	broad.mit.edu	37	chr20	402911	402911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggtgggagacatacccCaagtcccaactcctaaggaa	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	402911	A	A	402911	1	1	9	0	1	0	0	0	0	0	0	0	13215	609	21	2		2	RBCK1	20	402911	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	59	402911	62622609	17071	25222											
TBC1D20	128637	broad.mit.edu	37	chr20	419264	419264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgaaacttaggggccCattccagggcacttttcacc	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	419264	A	A	419264	3	1	9	1	0	0	0	0	1	0	0	0	15728	595	21	2	37	2	TBC1D20	20	419264	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16353	419264	62606256	17072	25223											
CSNK2A1	1457	broad.mit.edu	37	chr20	480449	480449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccatctcagctctggcGggccttgctaacacctacta	7	15	2	0	rs148496503	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	480449	T	T	480449	1	4	9	0	1	0	0	0	0	0	0	0	3991	1131	39	1		1	CSNK2A1	20	480449	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	61185	480449	62545071	17073	25224											
PSMF1	9491	broad.mit.edu	37	chr20	1144967	1144967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcttgcctcaggcctcGgagaggtggcatgattgtgg	14	9	3	2	rs148816301	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1144967	T	T	1144967	3	4	9	1	0	0	0	0	1	0	0	0	12816	1116	39	1	633	1	PSMF1	20	1144967	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	664518	1144967	61880553	17074	25225											
SIRPB2	284759	broad.mit.edu	37	chr20	1456800	1456800	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagagggtcctcactctGgggctgacccctcactcttg	10	15	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1456800	T	T	1456800	1	4	9	0	1	0	0	0	0	0	0	0	14447	1363	47	2		2	SIRPB2	20	1456800	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	311833	1456800	61568720	17075	25226											
SIRPB2	284759	broad.mit.edu	37	chr20	1460278	1460278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatacagcatgatacagtGgataaaggtgactgtgcagg	14	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1460278	T	T	1460278	1	4	9	0	1	0	0	0	0	0	0	0	14447	1363	47	2		2	SIRPB2	20	1460278	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3478	1460278	61565242	17076	25227											
SIRPD	128646	broad.mit.edu	37	chr20	1532391	1532391	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactccttgatagctcttcCttttatgaacttcacgcagt	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1532391	A	A	1532391	4	1	9	1	0	0	0	0	0	1	0	0	14448	690	24	2	238	2	SIRPD	20	1532391	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72113	1532391	61493129	17077	25228											
SIRPB1	10326	broad.mit.edu	37	chr20	1559034	1559034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaaactccacgtcgtcaGggctccctttccggaacttc	7	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1559034	T	T	1559034	3	4	9	1	0	0	0	0	1	0	0	0	14446	1000	35	2	829	2	SIRPB1	20	1559034	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26643	1559034	61466486	17078	25229											
SIRPB1	10326	broad.mit.edu	37	chr20	1559154	1559154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgaaacagttgttaccCgtgggaagtggccttctttc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1559154	A	A	1559154	3	1	9	1	0	0	0	0	1	0	0	0	14446	652	23	1	949	1	SIRPB1	20	1559154	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	120	1559154	61466366	17079	25230											
SIRPG	55423	broad.mit.edu	37	chr20	1629815	1629815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtgatgctactgatgcGgatggaaaagtccatgttgt	15	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1629815	T	T	1629815	3	4	9	1	0	0	0	0	1	0	0	0	14449	1116	39	1	866	1	SIRPG	20	1629815	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70661	1629815	61395705	17080	25231											
SIRPG	55423	broad.mit.edu	37	chr20	1638298	1638298	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgctcacctgtaagtccCagcagtagagtcagaagcag	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1638298	A	A	1638298	2	1	9	1	0	0	0	0	0	0	0	1	14449	581	21	2		2	SIRPG	20	1638298	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8483	1638298	61387222	17081	25232											
PDYN	5173	broad.mit.edu	37	chr20	1961396	1961396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctttgttgagatacttGggagaaacttgcttttctcc	8	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1961396	T	T	1961396	3	4	9	1	0	0	0	0	1	0	0	0	11793	1348	47	2	430	2	PDYN	20	1961396	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	323098	1961396	61064124	17082	25233											
TGM3	7053	broad.mit.edu	37	chr20	2290985	2290985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggacggtacacaatggccCtccagatcttctcccagggc	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2290985	A	A	2290985	3	1	9	1	0	0	0	0	1	0	0	0	15954	681	24	2	353	2	TGM3	20	2290985	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	329589	2290985	60734535	17083	25234											
TGM3	7053	broad.mit.edu	37	chr20	2297663	2297663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattctgcatgtcagtctccCtaggaaaggcattagtgctg	10	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2297663	A	A	2297663	1	1	9	0	1	0	0	0	0	0	0	0	15954	696	24	2		2	TGM3	20	2297663	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6678	2297663	60727857	17084	25235											
TGM6	343641	broad.mit.edu	37	chr20	2376049	2376049	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagcaaccggaggctgggcGagtttgttctccttttcaac	11	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2376049	T	T	2376049	4	4	9	1	0	0	0	0	0	1	0	0	15957	1059	37	3	401	3	TGM6	20	2376049	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78386	2376049	60649471	17085	25236											
TGM6	343641	broad.mit.edu	37	chr20	2381023	2381023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacgacacagaccagaacCtgagtgtggacaaatacgtg	10	12	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2381023	A	A	2381023	3	1	9	1	0	0	0	0	1	0	0	0	15957	680	24	2	948	2	TGM6	20	2381023	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4974	2381023	60644497	17086	25237											
ZNF343	79175	broad.mit.edu	37	chr20	2464253	2464253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccgctcgtgtatgatgaGggttgacttgtcacaaaagc	12	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2464253	T	T	2464253	3	4	9	1	0	0	0	0	1	0	0	0	17984	1000	35	2	449	2	ZNF343	20	2464253	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83230	2464253	60561267	17087	25238											
IDH3B	3420	broad.mit.edu	37	chr20	2640267	2640267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaaactgtgactccccCaagacacctcccgctaattt	7	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2640267	A	A	2640267	1	1	9	0	1	0	0	0	0	0	0	0	7567	609	21	2		2	IDH3B	20	2640267	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	176014	2640267	60385253	17088	25239											
FAM113A	64773	broad.mit.edu	37	chr20	2819590	2819590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggtactcggagtaaacacGagtgaggaagtagaagcgca	14	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2819590	T	T	2819590	3	4	9	1	0	0	0	0	1	0	0	0	5447	1058	37	3	1041	3	FAM113A	20	2819590	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	179323	2819590	60205930	17089	25240											
FAM113A	64773	broad.mit.edu	37	chr20	2819665	2819665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcacgatactgtgtccCgttgtgcagctcgcccagct	10	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2819665	A	A	2819665	3	1	9	1	0	0	0	0	1	0	0	0	5447	652	23	1	1116	1	FAM113A	20	2819665	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	2819665	60205855	17090	25241											
VPS16	64601	broad.mit.edu	37	chr20	2844581	2844581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagatgtttgtgacacccCgcatcccttgcaggtgcaac	9	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2844581	A	A	2844581	1	1	9	0	1	0	0	0	0	0	0	0	17320	667	23	1		1	VPS16	20	2844581	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	24916	2844581	60180939	17091	25242											
PTPRA	5786	broad.mit.edu	37	chr20	3005230	3005230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatttacaacaaaatccCagggaccagcaacaatggat	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3005230	A	A	3005230	3	1	9	1	0	0	0	0	1	0	0	0	12903	594	21	2	1631	2	PTPRA	20	3005230	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	160649	3005230	60020290	17092	25243											
MRPS26	64949	broad.mit.edu	37	chr20	3028375	3028375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgggcttttctctccCgataggaagaggtgaaaaac	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3028375	A	A	3028375	1	1	9	0	1	0	0	0	0	0	0	0	9931	667	23	1		1	MRPS26	20	3028375	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	23145	3028375	59997145	17093	25244											
UBOX5	22888	broad.mit.edu	37	chr20	3090941	3090941	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaggcacattcggggccCaggatgctcccaggctgctc	14	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3090941	A	A	3090941	2	1	9	1	0	0	0	0	0	0	0	1	17020	581	21	2		2	UBOX5	20	3090941	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62566	3090941	59934579	17094	25245											
ITPA	3704	broad.mit.edu	37	chr20	3194563	3194563	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccccagcctgggtgacgcgGgtgacctggacgttccaggt	16	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3194563	C	C	3194563	1	2	9	0	1	0	0	0	0	0	0	0	7985	1247	43	4		4	ITPA	20	3194563	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	103622	3194563	59830957	17095	25246											
SLC4A11	83959	broad.mit.edu	37	chr20	3210900	3210900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagggcgatgatctcctcCgtcgacctgccaggaggcca	13	13	1	2	rs139106875		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3210900	A	A	3210900	2	1	9	1	0	0	0	0	0	0	0	1	14766	639	23	1		1	SLC4A11	20	3210900	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16337	3210900	59814620	17096	25247											
SLC4A11	83959	broad.mit.edu	37	chr20	3211235	3211235	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaactattccacaggccCgtccatgcgtagaaggagtt	10	10	0	2	rs6084312	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3211235	A	A	3211235	2	1	9	1	0	0	0	0	0	0	0	1	14766	639	23	1		1	SLC4A11	20	3211235	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	335	3211235	59814285	17097	25248											
SLC4A11	83959	broad.mit.edu	37	chr20	3215433	3215433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgacattgacaaaaaaacGgatactctcgccagacacga	8	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3215433	T	T	3215433	3	4	9	1	0	0	0	0	1	0	0	0	14766	1116	39	1	2503	1	SLC4A11	20	3215433	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4198	3215433	59810087	17098	25249											
C20orf194	25943	broad.mit.edu	37	chr20	3303303	3303304	+	Nonsense_Mutation	DNP	CC	AA	AA													acaatcatatacgcaccttcCctgattattcacagcatgta							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	3303304	AA	AA	3303303	4	1	9	1	0	0	0	0	0	1	0	0	2121	632	22	2	2319	2	C20orf194	20	3303303	Nonsense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	87870	3303303	59722217	17099	25250											
C20orf194	25943	broad.mit.edu	37	chr20	3303352	3303352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcttggagctgtagacCagaaacaaaacaaaagaaaa	8	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3303352	A	A	3303352	1	1	9	0	1	0	0	0	0	0	0	0	2121	609	21	2		2	C20orf194	20	3303352	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	49	3303352	59722168	17100	25251											
C20orf194	25943	broad.mit.edu	37	chr20	3305582	3305582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactcaaaggaatctaaccCagatcccagagtttgctctg	7	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3305582	A	A	3305582	3	1	9	1	0	0	0	0	1	0	0	0	2121	594	21	2	2407	2	C20orf194	20	3305582	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2230	3305582	59719938	17101	25252											
C20orf194	25943	broad.mit.edu	37	chr20	3311344	3311344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacctgtgaaagaggccCactaagaatgtgacaagagc	10	11	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3311344	A	A	3311344	1	1	9	0	1	0	0	0	0	0	0	0	2121	609	21	2		2	C20orf194	20	3311344	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5762	3311344	59714176	17102	25253											
ATRN	8455	broad.mit.edu	37	chr20	3520964	3520964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggactcaatttatgcacCgctagttgctgcatttaggt	11	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3520964	A	A	3520964	3	1	9	1	0	0	0	0	1	0	0	0	1210	652	23	1	600	1	ATRN	20	3520964	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	209620	3520964	59504556	17103	25254											
ATRN	8455	broad.mit.edu	37	chr20	3541653	3541653	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttcaacctaatcttgattCggtactttatcttgaaacat	5	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3541653	A	A	3541653	1	1	9	0	1	0	0	0	0	0	0	0	1210	899	31	3		3	ATRN	20	3541653	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20689	3541653	59483867	17104	25255											
ATRN	8455	broad.mit.edu	37	chr20	3564569	3564569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagtgctaagcagtgccGgacaccatgtgccttgagga	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3564569	T	T	3564569	3	4	9	1	0	0	0	0	1	0	0	0	1210	1116	39	1	2855	1	ATRN	20	3564569	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22916	3564569	59460951	17105	25256											
ATRN	8455	broad.mit.edu	37	chr20	3564702	3564702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccttttggccagtgtatGgaatggtatacgatgagcac	11	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3564702	T	T	3564702	3	4	9	1	0	0	0	0	1	0	0	0	1210	1348	47	2	2988	2	ATRN	20	3564702	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	133	3564702	59460818	17106	25257											
ATRN	8455	broad.mit.edu	37	chr20	3564730	3564730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacgatgagcacctgccccCgtaagtgaaaaagggagccc	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3564730	A	A	3564730	3	1	9	1	0	0	0	0	1	0	0	0	1210	666	23	1	3016	1	ATRN	20	3564730	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28	3564730	59460790	17107	25258											
ADAM33	80332	broad.mit.edu	37	chr20	3649675	3649675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaggatatgttgtcccCtaaggactggggccccaggc	15	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3649675	A	A	3649675	1	1	9	0	1	0	0	0	0	0	0	0	250	696	24	2		2	ADAM33	20	3649675	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	84945	3649675	59375845	17108	25259											
CDC25B	994	broad.mit.edu	37	chr20	3778380	3778380	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgtcgtctgaatcctcCgaatcttctgatgcaggtga	9	12	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3778380	A	A	3778380	2	1	9	1	0	0	0	0	0	0	0	1	3093	639	23	1		1	CDC25B	20	3778380	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	128705	3778380	59247140	17109	25260											
C20orf29	55317	broad.mit.edu	37	chr20	3802818	3802818	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccgaatactgaggacacGggcctttgccgagtgctgta	13	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3802818	T	T	3802818	2	4	9	1	0	0	0	0	0	0	0	1	2130	1103	39	1		1	C20orf29	20	3802818	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24438	3802818	59222702	17110	25261											
PANK2	80025	broad.mit.edu	37	chr20	3888735	3888735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgggtctacaggcattcGggacgtgcacctcgagctga	13	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3888735	T	T	3888735	3	4	9	1	0	0	0	0	1	0	0	0	11511	1116	39	1	797	1	PANK2	20	3888735	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85917	3888735	59136785	17111	25262											
PANK2	80025	broad.mit.edu	37	chr20	3903937	3903937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgagctgttgaagatccCgtgatcattacctggggagg	13	9	1	4	rs41279408		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3903937	A	A	3903937	3	1	9	1	0	0	0	0	1	0	0	0	11511	652	23	1	1735	1	PANK2	20	3903937	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15202	3903937	59121583	17112	25263											
SLC23A2	9962	broad.mit.edu	37	chr20	4855283	4855283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcttggatttataaatcGggagaggaaatttaacattt	8	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4855283	T	T	4855283	3	4	9	1	0	0	0	0	1	0	0	0	14577	1116	39	1	1100	1	SLC23A2	20	4855283	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	951346	4855283	58170237	17113	25264											
SLC23A2	9962	broad.mit.edu	37	chr20	4865410	4865410	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttttacctctcggatccGgggataccagatgtgttctg	11	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4865410	T	T	4865410	2	4	9	1	0	0	0	0	0	0	0	1	14577	1115	39	1		1	SLC23A2	20	4865410	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	10127	4865410	58160110	17114	25265											
CDS2	8760	broad.mit.edu	37	chr20	5154266	5154266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctctgcagatgatacccCggaggtcctcaatagggccc	11	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5154266	A	A	5154266	3	1	9	1	0	0	0	0	1	0	0	0	3208	652	23	1	161	1	CDS2	20	5154266	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	288856	5154266	57871254	17115	25266											
CDS2	8760	broad.mit.edu	37	chr20	5165606	5165606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaggtaaatggattaccCtaatgtgaaataccactgtg	8	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5165606	A	A	5165606	1	1	9	0	1	0	0	0	0	0	0	0	3208	696	24	2		2	CDS2	20	5165606	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11340	5165606	57859914	17116	25267											
CDS2	8760	broad.mit.edu	37	chr20	5167351	5167351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtcctatgtgatgtccGggtacagatgctttgtctgc	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5167351	T	T	5167351	3	4	9	1	0	0	0	0	1	0	0	0	3208	1116	39	1	885	1	CDS2	20	5167351	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1745	5167351	57858169	17117	25268											
GPCPD1	56261	broad.mit.edu	37	chr20	5528398	5528398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaagcggctaacagtgGgacacaaacagctcttaagc	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5528398	T	T	5528398	3	4	9	1	0	0	0	0	1	0	0	0	6668	1232	43	2	94	2	GPCPD1	20	5528398	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	361047	5528398	57497122	17118	25269											
TRMT6	51605	broad.mit.edu	37	chr20	5921675	5921675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcgggagggcagctcttGggactggctgtaagaacacg	16	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5921675	T	T	5921675	1	4	9	0	1	0	0	0	0	0	0	0	16693	1363	47	2		2	TRMT6	20	5921675	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	393277	5921675	57103845	17119	25270											
TRMT6	51605	broad.mit.edu	37	chr20	5921757	5921757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgacccctcccctctccCgcagttttgtgtagcattcc	7	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5921757	A	A	5921757	3	1	9	1	0	0	0	0	1	0	0	0	16693	652	23	1	257	1	TRMT6	20	5921757	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	82	5921757	57103763	17120	25271											
TRMT6	51605	broad.mit.edu	37	chr20	5922492	5922492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagacaaaatcctcatctcGggtcccactagagtcaaagc	7	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5922492	T	T	5922492	1	4	9	0	1	0	0	0	0	0	0	0	16693	1131	39	1		1	TRMT6	20	5922492	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	735	5922492	57103028	17121	25272											
TRMT6	51605	broad.mit.edu	37	chr20	5923044	5923044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgagggactgagattatGggggtggtggggactcttgg	19	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5923044	T	T	5923044	1	4	9	0	1	0	0	0	0	0	0	0	16693	1363	47	2		2	TRMT6	20	5923044	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	552	5923044	57102476	17122	25273											
MCM8	84515	broad.mit.edu	37	chr20	5948180	5948180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtggatagctgtgtccCgggagacacagtgactatta	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5948180	A	A	5948180	3	1	9	1	0	0	0	0	1	0	0	0	9486	652	23	1	1004	1	MCM8	20	5948180	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25136	5948180	57077340	17123	25274											
LRRN4	164312	broad.mit.edu	37	chr20	6022518	6022518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcgggggcatgttctcctCggtgctgggtcctggtggtg	18	10	1	0	rs150820953	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6022518	A	A	6022518	3	1	9	1	0	0	0	0	1	0	0	0	9124	884	31	3	853	3	LRRN4	20	6022518	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	74338	6022518	57003002	17124	25275											
FERMT1	55612	broad.mit.edu	37	chr20	6075552	6075552	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatcttcaagactttgttatGagtaactccttttccccata	4	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6075552	T	T	6075552	1	4	9	0	1	0	0	0	0	0	0	0	5874	1305	45	3		3	FERMT1	20	6075552	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53034	6075552	56949968	17125	25276											
FERMT1	55612	broad.mit.edu	37	chr20	6077744	6077744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttataaatataaatgaatcCattagccatttttttctttg	4	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6077744	A	A	6077744	1	1	9	0	1	0	0	0	0	0	0	0	5874	609	21	2		2	FERMT1	20	6077744	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2192	6077744	56947776	17126	25277											
TMX4	56255	broad.mit.edu	37	chr20	7963023	7963023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggctctacttcctcccGggtcacaccgtcctctcctg	7	19	4	0	rs144787670	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7963023	T	T	7963023	2	4	9	1	0	0	0	0	0	0	0	1	16392	1115	39	1		1	TMX4	20	7963023	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1885279	7963023	55062497	17127	25278											
PLCB1	23236	broad.mit.edu	37	chr20	8639430	8639430	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgggagttaggaacaccAgtgatcgttaggttagtttc	13	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8639430	G	G	8639430	1	3	9	0	1	0	0	0	0	0	0	0	12122	203	7	5		5	PLCB1	20	8639430	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	676407	8639430	54386090	17128	25279											
PLCB1	23236	broad.mit.edu	37	chr20	8678221	8678221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttctaagaaagcaccacGgtcatccttgcttcatggga	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8678221	T	T	8678221	1	4	9	0	1	0	0	0	0	0	0	0	12122	1131	39	1		1	PLCB1	20	8678221	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38791	8678221	54347299	17129	25280											
PLCB1	23236	broad.mit.edu	37	chr20	8731434	8731434	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagctactttctgacaAtatttgtcctgagtagggtg	9	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8731434	G	G	8731434	1	3	9	0	1	0	0	0	0	0	0	0	12122	116	4	5		5	PLCB1	20	8731434	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	53213	8731434	54294086	17130	25281											
PLCB4	5332	broad.mit.edu	37	chr20	9388503	9388503	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattaaggaaatctgcagCacgtatccgtgggtcctact	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9388503	T	T	9388503	1	4	9	0	1	0	0	0	0	0	0	0	12125	725	25	4		4	PLCB4	20	9388503	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	657069	9388503	53637017	17131	25282											
PLCB4	5332	broad.mit.edu	37	chr20	9417855	9417855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaccttaattacacagtgTacaatatctatagctttagg	5	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9417855	A	A	9417855	1	1	9	0	1	0	0	0	0	0	0	0	12125	1653	57	5		5	PLCB4	20	9417855	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	29352	9417855	53607665	17132	25283											
PAK7	57144	broad.mit.edu	37	chr20	9520248	9520248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcaagtctaggaatcccCggagcactgaagaaacctgt	9	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9520248	A	A	9520248	3	1	9	1	0	0	0	0	1	0	0	0	11499	652	23	1	142	1	PAK7	20	9520248	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	102393	9520248	53505272	17133	25284											
PAK7	57144	broad.mit.edu	37	chr20	9523349	9523349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttctatcaccatgatccCgagggaccagatgtccacct	7	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9523349	A	A	9523349	3	1	9	1	0	0	0	0	1	0	0	0	11499	652	23	1	279	1	PAK7	20	9523349	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3101	9523349	53502171	17134	25285											
PAK7	57144	broad.mit.edu	37	chr20	9561353	9561353	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctccctgtacttttcGgtcgtgtagtcagcagtagt	9	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9561353	T	T	9561353	2	4	9	1	0	0	0	0	0	0	0	1	11499	1103	39	1		1	PAK7	20	9561353	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	38004	9561353	53464167	17135	25286											
MKKS	8195	broad.mit.edu	37	chr20	10394047	10394047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcttcagcctacctgagGggccatagcatgatgttaca	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10394047	T	T	10394047	3	4	9	1	0	0	0	0	1	0	0	0	9693	1232	43	2	1612	2	MKKS	20	10394047	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	832694	10394047	52631473	17136	25287											
MKKS	8195	broad.mit.edu	37	chr20	10394156	10394156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcttcttagcttccaaacGagacatcttacttcaggtgg	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10394156	T	T	10394156	3	4	9	1	0	0	0	0	1	0	0	0	9693	1058	37	3	1721	3	MKKS	20	10394156	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109	10394156	52631364	17137	25288											
C20orf94	128710	broad.mit.edu	37	chr20	10603759	10603759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagtgatcgattagtccCgagagaaataatagtggaaa	12	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10603759	A	A	10603759	3	1	9	1	0	0	0	0	1	0	0	0	2143	652	23	1	985	1	C20orf94	20	10603759	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	209603	10603759	52421761	17138	25289											
JAG1	182	broad.mit.edu	37	chr20	10620166	10620166	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatacgatgtactccattcGgtttaagctctgggcacttt	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10620166	T	T	10620166	2	4	9	1	0	0	0	0	0	0	0	1	8004	1124	39	1		1	JAG1	20	10620166	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	16407	10620166	52405354	17139	25290											
JAG1	182	broad.mit.edu	37	chr20	10625625	10625625	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggcagctactgtttcGggctataaaagaagagcaga	14	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10625625	T	T	10625625	2	4	9	1	0	0	0	0	0	0	0	1	8004	1124	39	1		1	JAG1	20	10625625	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5459	10625625	52399895	17140	25291											
JAG1	182	broad.mit.edu	37	chr20	10627606	10627606	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcatggcagtatgttccCgtgaagcctttgttacagtc	9	10	1	1	rs140624746		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10627606	A	A	10627606	2	1	9	1	0	0	0	0	0	0	0	1	8004	639	23	1		1	JAG1	20	10627606	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1981	10627606	52397914	17141	25292											
BTBD3	22903	broad.mit.edu	37	chr20	11898959	11898959	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaagaacatgaaatgtctCaccttcttcttgatgcttcc	6	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11898959	A	A	11898959	2	1	9	1	0	0	0	0	0	0	0	1	1554	813	29	3		3	BTBD3	20	11898959	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1271353	11898959	51126561	17142	25293											
BTBD3	22903	broad.mit.edu	37	chr20	11899258	11899258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagagagaggtaagtgcCgcgctagtctatttacttta	10	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11899258	A	A	11899258	1	1	9	0	1	0	0	0	0	0	0	0	1554	667	23	1		1	BTBD3	20	11899258	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	299	11899258	51126262	17143	25294											
BTBD3	22903	broad.mit.edu	37	chr20	11903757	11903757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatggtgctgcacagtccGgggtattaactctcaatgag	11	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11903757	T	T	11903757	3	4	9	1	0	0	0	0	1	0	0	0	1554	1116	39	1	1026	1	BTBD3	20	11903757	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4499	11903757	51121763	17144	25295											
BTBD3	22903	broad.mit.edu	37	chr20	11904101	11904101	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccagcaatacctttccCgtatggtttgaatacccagt	9	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11904101	A	A	11904101	2	1	9	1	0	0	0	0	0	0	0	1	1554	639	23	1		1	BTBD3	20	11904101	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	344	11904101	51121419	17145	25296											
SPTLC3	55304	broad.mit.edu	37	chr20	13071798	13071798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgtggaagcagctatGgtctttgggatgggattcgc	15	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13071798	T	T	13071798	3	4	9	1	0	0	0	0	1	0	0	0	15243	1348	47	2	693	2	SPTLC3	20	13071798	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1167697	13071798	49953722	17146	25297											
SPTLC3	55304	broad.mit.edu	37	chr20	13090818	13090818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatggccagcctcgaaccCgcagagcttggaaaaagatt	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13090818	A	A	13090818	3	1	9	1	0	0	0	0	1	0	0	0	15243	652	23	1	912	1	SPTLC3	20	13090818	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19020	13090818	49934702	17147	25298											
SPTLC3	55304	broad.mit.edu	37	chr20	13107257	13107257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctcgtggattatttacGggttcactcgcatagtgctg	12	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13107257	T	T	13107257	3	4	9	1	0	0	0	0	1	0	0	0	15243	1116	39	1	1206	1	SPTLC3	20	13107257	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16439	13107257	49918263	17148	25299											
ESF1	51575	broad.mit.edu	37	chr20	13763728	13763728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcatttcccaaaatctcGggtcctttgcaacccgtcta	7	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13763728	T	T	13763728	3	4	9	1	0	0	0	0	1	0	0	0	5293	1116	39	1	2548	1	ESF1	20	13763728	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	656471	13763728	49261792	17149	25300											
ESF1	51575	broad.mit.edu	37	chr20	13763743	13763743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcgggtcctttgcaaccCgtctaaaccgctggtcactc	8	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13763743	A	A	13763743	3	1	9	1	0	0	0	0	1	0	0	0	5293	652	23	1	2563	1	ESF1	20	13763743	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	13763743	49261777	17150	25301											
SEL1L2	80343	broad.mit.edu	37	chr20	13850882	13850882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaagccaagtaaagtccCagaagaattcatgataagga	8	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13850882	A	A	13850882	1	1	9	0	1	0	0	0	0	0	0	0	14124	609	21	2		2	SEL1L2	20	13850882	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	87139	13850882	49174638	17151	25302											
SEL1L2	80343	broad.mit.edu	37	chr20	13868479	13868479	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtagaacattgattccCgacaaatatctgtaccccta	5	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13868479	A	A	13868479	2	1	9	1	0	0	0	0	0	0	0	1	14124	639	23	1		1	SEL1L2	20	13868479	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	17597	13868479	49157041	17152	25303											
FLRT3	23767	broad.mit.edu	37	chr20	14306971	14306971	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgatccttagtgagcttGgggttcttaatatctggctg	13	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14306971	T	T	14306971	2	4	9	1	0	0	0	0	0	0	0	1	5998	1335	47	2		2	FLRT3	20	14306971	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	438492	14306971	48718549	17153	25304											
MACROD2	140733	broad.mit.edu	37	chr20	15843467	15843467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgaatgagtttttctcCgtaggtgagtaaagcaactt	9	5	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15843467	A	A	15843467	2	1	9	1	0	0	0	0	0	0	0	1	9234	639	23	1		1	MACROD2	20	15843467	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1536496	15843467	47182053	17154	25305											
MACROD2	140733	broad.mit.edu	37	chr20	15866411	15866411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcctattttttaacagacGataataatgaagaagaagag	7	4	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15866411	T	T	15866411	3	4	9	1	0	0	0	0	1	0	0	0	9234	1058	37	3	768	3	MACROD2	20	15866411	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22944	15866411	47159109	17155	25306											
KIF16B	55614	broad.mit.edu	37	chr20	16359410	16359410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaatgagcactcatttGgcacccactgtatgccacac	7	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16359410	T	T	16359410	1	4	9	0	1	0	0	0	0	0	0	0	8348	1363	47	2		2	KIF16B	20	16359410	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	492999	16359410	46666110	17156	25307											
KIF16B	55614	broad.mit.edu	37	chr20	16387085	16387085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaacatattggttcttccCaagagaatcacagcacctga	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16387085	A	A	16387085	3	1	9	1	0	0	0	0	1	0	0	0	8348	593	21	2	2368	2	KIF16B	20	16387085	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27675	16387085	46638435	17157	25308											
KIF16B	55614	broad.mit.edu	37	chr20	16492085	16492085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacataagggccttctttGggatgctcacggactctcaa	9	11	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16492085	T	T	16492085	2	4	9	1	0	0	0	0	0	0	0	1	8348	1335	47	2		2	KIF16B	20	16492085	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	105000	16492085	46533435	17158	25309											
KIF16B	55614	broad.mit.edu	37	chr20	16506813	16506813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataggtgaaggtcttggtcCgttctcttcctgagtcccca	10	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16506813	A	A	16506813	3	1	9	1	0	0	0	0	1	0	0	0	8348	652	23	1	3894	1	KIF16B	20	16506813	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	14728	16506813	46518707	17159	25310											
OTOR	56914	broad.mit.edu	37	chr20	16729076	16729076	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattgttacttttcctcccGggtcttgtggctgtatgtgc	10	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16729076	T	T	16729076	2	4	9	1	0	0	0	0	0	0	0	1	11402	1103	39	1		1	OTOR	20	16729076	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	222263	16729076	46296444	17160	25311											
PCSK2	5126	broad.mit.edu	37	chr20	17389960	17389960	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacccctatccttaccctcGgtacacagatgactggttta	7	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17389960	T	T	17389960	3	4	9	1	0	0	0	0	1	0	0	0	11695	1116	39	1	618	1	PCSK2	20	17389960	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	660884	17389960	45635560	17161	25312											
PCSK2	5126	broad.mit.edu	37	chr20	17410084	17410084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatatttttccaaagccacGggacccgatgtgcaggagaa	10	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17410084	T	T	17410084	3	4	9	1	0	0	0	0	1	0	0	0	11695	1116	39	1	651	1	PCSK2	20	17410084	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	20124	17410084	45615436	17162	25313											
PCSK2	5126	broad.mit.edu	37	chr20	17436938	17436938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctgctccacattgtgcGggggttcaaaatagcgtgat	11	11	1	1	rs148674298	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17436938	T	T	17436938	1	4	9	0	1	0	0	0	0	0	0	0	11695	1131	39	1		1	PCSK2	20	17436938	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26854	17436938	45588582	17163	25314											
PCSK2	5126	broad.mit.edu	37	chr20	17437055	17437055	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggacatctgcagctgccccCgaggcagctggtgtgtttgc	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17437055	G	G	17437055	2	3	9	1	0	0	0	0	0	0	0	1	11695	639	23	4		4	PCSK2	20	17437055	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	117	17437055	45588465	17164	25315											
DSTN	11034	broad.mit.edu	37	chr20	17587727	17587727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaccagaagatctcaatcGggcttgtattgctgaaaagt	11	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17587727	T	T	17587727	3	4	9	1	0	0	0	0	1	0	0	0	4824	1116	39	1	448	1	DSTN	20	17587727	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	150672	17587727	45437793	17165	25316											
RRBP1	6238	broad.mit.edu	37	chr20	17600950	17600950	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagagcacatacctggtcCgaactttcaagttctccttt	7	12	2	1	rs138279227		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17600950	A	A	17600950	2	1	9	1	0	0	0	0	0	0	0	1	13789	639	23	1		1	RRBP1	20	17600950	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	13223	17600950	45424570	17166	25317											
SNX5	27131	broad.mit.edu	37	chr20	17928220	17928220	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtctttgctctttaaccGggccttatccagagctttgt	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17928220	T	T	17928220	2	4	9	1	0	0	0	0	0	0	0	1	15019	1115	39	1		1	SNX5	20	17928220	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	327270	17928220	45097300	17167	25318											
SNX5	27131	broad.mit.edu	37	chr20	17943403	17943403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgggtctcagagggcccCgtccctgctgacaccaacca	11	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17943403	A	A	17943403	1	1	9	0	1	0	0	0	0	0	0	0	15019	667	23	1		1	SNX5	20	17943403	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15183	17943403	45082117	17168	25319											
C20orf72	92667	broad.mit.edu	37	chr20	17950966	17950966	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggagaggtggaaacagcGgatgattctggaactgggag	18	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17950966	T	T	17950966	3	4	9	1	0	0	0	0	1	0	0	0	2140	1116	39	1	466	1	C20orf72	20	17950966	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7563	17950966	45074554	17169	25320											
CSRP2BP	57325	broad.mit.edu	37	chr20	18163860	18163860	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcactggacgccggagccCgacgcacctctcgattactg	10	17	2	0	rs149106213		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18163860	A	A	18163860	2	1	9	1	0	0	0	0	0	0	0	1	4002	639	23	1		1	CSRP2BP	20	18163860	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	212894	18163860	44861660	17170	25321											
C20orf12	55184	broad.mit.edu	37	chr20	18379271	18379271	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtcttctccagtaccCtaagaaagaagagaaacccc	7	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18379271	A	A	18379271	5	1	9	1	0	0	0	0	0	0	1	0	2107	695	24	2	858	2	C20orf12	20	18379271	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	215411	18379271	44646249	17171	25322											
C20orf12	55184	broad.mit.edu	37	chr20	18379291	18379291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagaaagaagagaaacccCgccatctggatgattctcct	8	11	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18379291	A	A	18379291	1	1	9	0	1	0	0	0	0	0	0	0	2107	667	23	1		1	C20orf12	20	18379291	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	20	18379291	44646229	17172	25323											
SEC23B	10483	broad.mit.edu	37	chr20	18523777	18523777	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggagtcagaggaggggccCgatgtgctccggtggctgga	20	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18523777	A	A	18523777	2	1	9	1	0	0	0	0	0	0	0	1	14105	639	23	1		1	SEC23B	20	18523777	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	144486	18523777	44501743	17173	25324											
SLC24A3	57419	broad.mit.edu	37	chr20	19701766	19701766	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacctttgtgaacctgccCatgtgcggggaccactgagc	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19701766	A	A	19701766	2	1	9	1	0	0	0	0	0	0	0	1	14581	581	21	2		2	SLC24A3	20	19701766	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1177989	19701766	43323754	17174	25325											
RIN2	54453	broad.mit.edu	37	chr20	19981267	19981267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacctgcagaattacctccGagttgcatttcaggaggtca	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19981267	T	T	19981267	3	4	9	1	0	0	0	0	1	0	0	0	13483	1058	37	3	2417	3	RIN2	20	19981267	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	279501	19981267	43044253	17175	25326											
NAA20	51126	broad.mit.edu	37	chr20	20007472	20007472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctagggaagaatggcacGggcacgtcacagctctgtct	13	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20007472	T	T	20007472	3	4	9	1	0	0	0	0	1	0	0	0	10214	1116	39	1	249	1	NAA20	20	20007472	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	26205	20007472	43018048	17176	25327											
CRNKL1	51340	broad.mit.edu	37	chr20	20020302	20020302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctaattcatagattgccCgtgctctgtcaatatcacca	7	11	4	1	rs138204178		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20020302	A	A	20020302	3	1	9	1	0	0	0	0	1	0	0	0	3923	652	23	1	583	1	CRNKL1	20	20020302	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12830	20020302	43005218	17177	25328											
CRNKL1	51340	broad.mit.edu	37	chr20	20026049	20026049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctctctcatacactttcCgtgcatgggcaaaataagca	7	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20026049	A	A	20026049	3	1	9	1	0	0	0	0	1	0	0	0	3923	652	23	1	1395	1	CRNKL1	20	20026049	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5747	20026049	42999471	17178	25329											
C20orf26	26074	broad.mit.edu	37	chr20	20079381	20079381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgctttgacttgggccCtttccacggactctgtttcc	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20079381	A	A	20079381	3	1	9	1	0	0	0	0	1	0	0	0	2128	681	24	2	808	2	C20orf26	20	20079381	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53332	20079381	42946139	17179	25330											
C20orf26	26074	broad.mit.edu	37	chr20	20246106	20246106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacttgcccagttgtcaGggatggtgatgctgtggtgc	16	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20246106	T	T	20246106	1	4	9	0	1	0	0	0	0	0	0	0	2128	1015	35	2		2	C20orf26	20	20246106	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	166725	20246106	42779414	17180	25331											
C20orf26	26074	broad.mit.edu	37	chr20	20271005	20271005	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcctgccattccaactccCttggaggtacaaatggcaca	8	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20271005	A	A	20271005	2	1	9	1	0	0	0	0	0	0	0	1	2128	668	24	2		2	C20orf26	20	20271005	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24899	20271005	42754515	17181	25332											
RALGAPA2	57186	broad.mit.edu	37	chr20	20592071	20592071	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttgcaacatctgttccCtgggccacccaaaataaaag	7	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20592071	A	A	20592071	5	1	9	1	0	0	0	0	0	0	1	0	13122	695	24	2	4037	2	RALGAPA2	20	20592071	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	321066	20592071	42433449	17182	25333											
RALGAPA2	57186	broad.mit.edu	37	chr20	20620497	20620497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcagcaatcttctcccCtgatatggctggtaggagtg	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20620497	A	A	20620497	3	1	9	1	0	0	0	0	1	0	0	0	13122	681	24	2	5155	2	RALGAPA2	20	20620497	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	28426	20620497	42405023	17183	25334											
PLK1S1	55857	broad.mit.edu	37	chr20	21142936	21142936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgctgaactcaattcccCgttacgggaaagattaagtc	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21142936	A	A	21142936	3	1	9	1	0	0	0	0	1	0	0	0	12190	652	23	1	848	1	PLK1S1	20	21142936	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	522439	21142936	41882584	17184	25335											
XRN2	22803	broad.mit.edu	37	chr20	21338403	21338403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctgttcctatgttaaGggatctgacacagaacactg	8	10	2	2	rs6137324		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21338403	T	T	21338403	3	4	9	1	0	0	0	0	1	0	0	0	17587	1000	35	2	2322	2	XRN2	20	21338403	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	195467	21338403	41687117	17185	25336											
SSTR4	6754	broad.mit.edu	37	chr20	23016381	23016381	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctaccaacatctacctgctCaacctggccgtagccgacga	8	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23016381	A	A	23016381	2	1	9	1	0	0	0	0	0	0	0	1	15318	813	29	3		3	SSTR4	20	23016381	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1677978	23016381	40009139	17186	25337											
SSTR4	6754	broad.mit.edu	37	chr20	23016973	23016973	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctgctgaacctcttcGtgaccagccttgatgccacc	9	15	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23016973	A	A	23016973	3	1	9	1	0	0	0	0	1	0	0	0	15318	1145	40	4	855	4	SSTR4	20	23016973	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	592	23016973	40008547	17187	25338											
CD93	22918	broad.mit.edu	37	chr20	23065098	23065098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataaaagcagcttttgccCgtcagtgccatcgttgtttt	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23065098	A	A	23065098	3	1	9	1	0	0	0	0	1	0	0	0	3077	652	23	1	234	1	CD93	20	23065098	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	48125	23065098	39960422	17188	25339											
CD93	22918	broad.mit.edu	37	chr20	23065457	23065457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatttggggccagcaccCagcctggcaggcagccacag	12	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23065457	A	A	23065457	3	1	9	1	0	0	0	0	1	0	0	0	3077	595	21	2	593	2	CD93	20	23065457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	359	23065457	39960063	17189	25340											
GZF1	64412	broad.mit.edu	37	chr20	23345334	23345334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacaggtggaagaagatcGggtgcagcgaatgctggaag	18	5	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23345334	T	T	23345334	3	4	9	1	0	0	0	0	1	0	0	0	6979	1116	39	1	316	1	GZF1	20	23345334	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	279877	23345334	39680186	17190	25341											
GZF1	64412	broad.mit.edu	37	chr20	23346167	23346167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcccatgcgagctgtgcGggaagaagttcaagcgcaag	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23346167	T	T	23346167	3	4	9	1	0	0	0	0	1	0	0	0	6979	1116	39	1	1149	1	GZF1	20	23346167	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	833	23346167	39679353	17191	25342											
CST8	10047	broad.mit.edu	37	chr20	23473637	23473637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattgatgtagaaattgccCgcagcgattgcagaaagcct	10	8	0	3	rs145901458	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23473637	A	A	23473637	3	1	9	1	0	0	0	0	1	0	0	0	4012	652	23	1	280	1	CST8	20	23473637	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	127470	23473637	39551883	17192	25343											
CST9L	128821	broad.mit.edu	37	chr20	23549030	23549030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcagcaggatctgggagcCtaagagaagcagcagcagcg	15	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23549030	A	A	23549030	3	1	9	1	0	0	0	0	1	0	0	0	4014	681	24	2	397	2	CST9L	20	23549030	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75393	23549030	39476490	17193	25344											
CST5	1473	broad.mit.edu	37	chr20	23860127	23860127	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagggcggctgtagtactCatccttattaatgaccttgt	10	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23860127	A	A	23860127	4	1	9	1	0	0	0	0	0	1	0	0	4009	835	29	3	253	3	CST5	20	23860127	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	311097	23860127	39165393	17194	25345											
C20orf3	57136	broad.mit.edu	37	chr20	24964645	24964645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcactcggaaaactctgcCgctaaaggagctgccagaaa	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24964645	A	A	24964645	3	1	9	1	0	0	0	0	1	0	0	0	2131	652	23	1	1176	1	C20orf3	20	24964645	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1104518	24964645	38060875	17195	25346											
ACSS1	84532	broad.mit.edu	37	chr20	24989990	24989990	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccacatctgagtcaccCgcactatctttcaccacaat	3	17	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24989990	A	A	24989990	2	1	9	1	0	0	0	0	0	0	0	1	188	639	23	1		1	ACSS1	20	24989990	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25345	24989990	38035530	17196	25347											
ACSS1	84532	broad.mit.edu	37	chr20	24993546	24993546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatagccgccctcagttcGgtaagccccgtctccagtga	10	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24993546	T	T	24993546	2	4	9	1	0	0	0	0	0	0	0	1	188	1124	39	1		1	ACSS1	20	24993546	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3556	24993546	38031974	17197	25348											
VSX1	30813	broad.mit.edu	37	chr20	25059480	25059480	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacctgtatccggtcttcGgggagctcagttttcacagc	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25059480	T	T	25059480	2	4	9	1	0	0	0	0	0	0	0	1	17358	1103	39	1		1	VSX1	20	25059480	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	65934	25059480	37966040	17198	25349											
VSX1	30813	broad.mit.edu	37	chr20	25059512	25059512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcacagccagcatttctcGggcatacacatcagggtagt	9	11	3	0	rs144917154		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25059512	T	T	25059512	2	4	9	1	0	0	0	0	0	0	0	1	17358	1124	39	1		1	VSX1	20	25059512	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	25059512	37966008	17199	25350											
ENTPD6	955	broad.mit.edu	37	chr20	25203541	25203541	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaacagagtgcacaggacGgaggaagtgaagcatgtgga	15	6	0	2	rs150868438	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25203541	T	T	25203541	2	4	9	1	0	0	0	0	0	0	0	1	5185	1103	39	1		1	ENTPD6	20	25203541	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	144029	25203541	37821979	17200	25351											
PYGB	5834	broad.mit.edu	37	chr20	25273026	25273026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacagtgatcccctccacGggctcccctccacagtgatc	7	19	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25273026	T	T	25273026	1	4	9	0	1	0	0	0	0	0	0	0	12968	1131	39	1		1	PYGB	20	25273026	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	69485	25273026	37752494	17201	25352											
PYGB	5834	broad.mit.edu	37	chr20	25277053	25277053	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggaacatcgcctgctcGggcaagttctccagtgaccg	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25277053	T	T	25277053	2	4	9	1	0	0	0	0	0	0	0	1	12968	1103	39	1		1	PYGB	20	25277053	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4027	25277053	37748467	17202	25353											
ABHD12	26090	broad.mit.edu	37	chr20	25349168	25349168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcaccaaatttctcccCgtaaatggacttgccaccag	5	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25349168	A	A	25349168	1	1	9	0	1	0	0	0	0	0	0	0	76	667	23	1		1	ABHD12	20	25349168	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	72115	25349168	37676352	17203	25354											
ABHD12	26090	broad.mit.edu	37	chr20	25349251	25349251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaataattctgtgaaagcGgaaacccttaaaaccaaatc	7	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25349251	T	T	25349251	1	4	9	0	1	0	0	0	0	0	0	0	76	1131	39	1		1	ABHD12	20	25349251	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	25349251	37676269	17204	25355											
NINL	22981	broad.mit.edu	37	chr20	25436338	25436338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttatccactttctcttGgaggagcatttccatattct	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25436338	T	T	25436338	3	4	9	1	0	0	0	0	1	0	0	0	10515	1357	47	2	228	2	NINL	20	25436338	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87087	25436338	37589182	17205	25356											
NINL	22981	broad.mit.edu	37	chr20	25436385	25436385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctccgcctcttccaccCgctcttctgtggctttcagc	6	18	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25436385	A	A	25436385	3	1	9	1	0	0	0	0	1	0	0	0	10515	652	23	1	275	1	NINL	20	25436385	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	47	25436385	37589135	17206	25357											
NINL	22981	broad.mit.edu	37	chr20	25450680	25450680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcttgccgaacccttccCagatcgtttttcaacaaagt	6	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25450680	A	A	25450680	2	1	9	1	0	0	0	0	0	0	0	1	10515	581	21	2		2	NINL	20	25450680	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14295	25450680	37574840	17207	25358											
NINL	22981	broad.mit.edu	37	chr20	25456719	25456719	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacatgtttctccagagcccGgacgacgtcttccagatgta	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25456719	C	C	25456719	3	2	9	1	0	0	0	0	1	0	0	0	10515	1115	39	4	972	4	NINL	20	25456719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6039	25456719	37568801	17208	25359											
NINL	22981	broad.mit.edu	37	chr20	25507086	25507086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcgtctgcaggaggacGggcagctgctgctccaggtg	17	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25507086	T	T	25507086	2	4	9	1	0	0	0	0	0	0	0	1	10515	1103	39	1		1	NINL	20	25507086	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	50367	25507086	37518434	17209	25360											
ZNF337	26152	broad.mit.edu	37	chr20	25656223	25656223	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattaaatggcctttccccCgagtgtgtccactgatgtct	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25656223	A	A	25656223	2	1	9	1	0	0	0	0	0	0	0	1	17979	639	23	1		1	ZNF337	20	25656223	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	149137	25656223	37369297	17210	25361											
DEFB116	245930	broad.mit.edu	37	chr20	29891139	29891139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcacttttgatcatttGggcaggttaagtattggatt	12	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29891139	T	T	29891139	3	4	9	1	0	0	0	0	1	0	0	0	4444	1348	47	2	126	2	DEFB116	20	29891139	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4234916	29891139	33134381	17211	25362											
DEFB123	245936	broad.mit.edu	37	chr20	30028469	30028469	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagctcagccgtggcatcGgacttgcagcttcattttgg	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30028469	T	T	30028469	1	4	9	0	1	0	0	0	0	0	0	0	4448	1131	39	1		1	DEFB123	20	30028469	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	137330	30028469	32997051	17212	25363											
HM13	81502	broad.mit.edu	37	chr20	30136875	30136875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaaggacctggtgtgcctGggcctgagcagcatcgttgg	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30136875	T	T	30136875	2	4	9	1	0	0	0	0	0	0	0	1	7284	1335	47	2		2	HM13	20	30136875	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	108406	30136875	32888645	17213	25364											
HM13	81502	broad.mit.edu	37	chr20	30136920	30136920	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtacctgctgaggaaggtGagtagtcaggacctgggcag	17	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30136920	T	T	30136920	1	4	9	0	1	0	0	0	0	0	0	0	7284	1305	45	3		3	HM13	20	30136920	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	30136920	32888600	17214	25365											
HM13	81502	broad.mit.edu	37	chr20	30147334	30147334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagatggaacaccaggttGgggaccaggacccagtctcc	12	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30147334	T	T	30147334	1	4	9	0	1	0	0	0	0	0	0	0	7284	1363	47	2		2	HM13	20	30147334	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	10414	30147334	32878186	17215	25366											
TPX2	22974	broad.mit.edu	37	chr20	30369972	30369972	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttggtttatccctctctGggctacataggtgaatcacc	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30369972	T	T	30369972	1	4	9	0	1	0	0	0	0	0	0	0	16556	1363	47	2		2	TPX2	20	30369972	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	222638	30369972	32655548	17216	25367											
TPX2	22974	broad.mit.edu	37	chr20	30385266	30385266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaggctcgtccaaacacCgtcatctctcaggagccctt	7	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30385266	A	A	30385266	2	1	9	1	0	0	0	0	0	0	0	1	16556	639	23	1		1	TPX2	20	30385266	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	15294	30385266	32640254	17217	25368											
MYLK2	85366	broad.mit.edu	37	chr20	30418900	30418900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaattatgaccaaatctcCgataagacagacatgtggag	10	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30418900	A	A	30418900	2	1	9	1	0	0	0	0	0	0	0	1	10151	639	23	1		1	MYLK2	20	30418900	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33634	30418900	32606620	17218	25369											
PDRG1	81572	broad.mit.edu	37	chr20	30534317	30534317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgggcctcaaaaaggcGgttgaccttcactttaagtt	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30534317	T	T	30534317	3	4	9	1	0	0	0	0	1	0	0	0	11784	1116	39	1	108	1	PDRG1	20	30534317	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	115417	30534317	32491203	17219	25370											
C20orf160	140706	broad.mit.edu	37	chr20	30602817	30602817	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgatgcccctttatcccccCgactacctcatcgaccccca	4	21	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30602817	A	A	30602817	2	1	9	1	0	0	0	0	0	0	0	1	2115	639	23	1		1	C20orf160	20	30602817	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	68500	30602817	32422703	17220	25371											
PLAGL2	5326	broad.mit.edu	37	chr20	30784783	30784783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagagggtagctcataccCatgggcagcgtgttgtgcac	13	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30784783	A	A	30784783	3	1	9	1	0	0	0	0	1	0	0	0	12115	594	21	2	531	2	PLAGL2	20	30784783	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	181966	30784783	32240737	17221	25372											
KIF3B	9371	broad.mit.edu	37	chr20	30914672	30914672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcattggaaactacatcCtataaccagactggagtaag	8	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30914672	A	A	30914672	3	1	9	1	0	0	0	0	1	0	0	0	8371	681	24	2	1865	2	KIF3B	20	30914672	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	129889	30914672	32110848	17222	25373											
ASXL1	171023	broad.mit.edu	37	chr20	31021635	31021635	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagccccggcttgaagatcGtcagtcctttcgtaacacaa	9	12	1	2	rs149449801		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31021635	C	C	31021635	3	2	9	1	0	0	0	0	1	0	0	0	1070	1145	40	4	1686	4	ASXL1	20	31021635	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106963	31021635	32003885	17223	25374											
DNMT3B	1789	broad.mit.edu	37	chr20	31376561	31376561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctacatcttgcattttatGgcaagctttttgttgccctc	8	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31376561	T	T	31376561	1	4	9	0	1	0	0	0	0	0	0	0	4717	1363	47	2		2	DNMT3B	20	31376561	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	354926	31376561	31648959	17224	25375											
DNMT3B	1789	broad.mit.edu	37	chr20	31379478	31379478	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggccaccttcaataagctCgtctcctatcgaaaagccat	6	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31379478	A	A	31379478	2	1	9	1	0	0	0	0	0	0	0	1	4717	871	31	3		3	DNMT3B	20	31379478	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2917	31379478	31646042	17225	25376											
DNMT3B	1789	broad.mit.edu	37	chr20	31390242	31390242	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgctgctcacagggccCgatacttctggggcaaccta	10	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31390242	A	A	31390242	2	1	9	1	0	0	0	0	0	0	0	1	4717	644	23	1		1	DNMT3B	20	31390242	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	10764	31390242	31635278	17226	25377											
DNMT3B	1789	broad.mit.edu	37	chr20	31395623	31395623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacatgggccgtggtgccCgccagaagctgctgggaagg	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31395623	A	A	31395623	3	1	9	1	0	0	0	0	1	0	0	0	4717	652	23	1	2602	1	DNMT3B	20	31395623	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5381	31395623	31629897	17227	25378											
MAPRE1	22919	broad.mit.edu	37	chr20	31427597	31427597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctcctaaggctggccctGgtgtggtgcgaaagaaccct	14	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31427597	T	T	31427597	3	4	9	1	0	0	0	0	1	0	0	0	9386	1348	47	2	546	2	MAPRE1	20	31427597	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	31974	31427597	31597923	17228	25379											
SUN5	140732	broad.mit.edu	37	chr20	31583401	31583401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagagaaattagatgtttGgggcagaatggccagcgtct	13	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31583401	T	T	31583401	1	4	9	0	1	0	0	0	0	0	0	0	15512	1363	47	2		2	SUN5	20	31583401	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	155804	31583401	31442119	17229	25380											
SUN5	140732	broad.mit.edu	37	chr20	31583484	31583484	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctggttcatgctacctcGgaggtcctggatttccccac	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31583484	T	T	31583484	2	4	9	1	0	0	0	0	0	0	0	1	15512	1124	39	1		1	SUN5	20	31583484	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	83	31583484	31442036	17230	25381											
BPIL3	128859	broad.mit.edu	37	chr20	31622019	31622019	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggatgtccagctgccCgtcatcacactgaactttgt	10	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31622019	A	A	31622019	2	1	9	1	0	0	0	0	0	0	0	1	1502	639	23	1		1	BPIL3	20	31622019	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	38535	31622019	31403501	17231	25382											
C20orf185	359710	broad.mit.edu	37	chr20	31657613	31657613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtaagggttagtggacGgaacagatggatggaggcag	17	5	1	1	rs76023443	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31657613	T	T	31657613	1	4	9	0	1	0	0	0	0	0	0	0	2119	1131	39	1		1	C20orf185	20	31657613	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	35594	31657613	31367907	17232	25383											
C20orf185	359710	broad.mit.edu	37	chr20	31659946	31659946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggctcagccatgtggtcGgggcagtgtatgcaccaaag	14	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31659946	T	T	31659946	3	4	9	1	0	0	0	0	1	0	0	0	2119	1116	39	1	1347	1	C20orf185	20	31659946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2333	31659946	31365574	17233	25384											
C20orf185	359710	broad.mit.edu	37	chr20	31661399	31661399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatgctgttgtgctgacCgtggcatcctgaggctgaga	14	9	0	4	rs114341725	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31661399	A	A	31661399	2	1	9	1	0	0	0	0	0	0	0	1	2119	639	23	1		1	C20orf185	20	31661399	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1453	31661399	31364121	17234	25385											
C20orf186	149954	broad.mit.edu	37	chr20	31671169	31671169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagacgcattgaattccccCgaggtgttggtgatattccc	10	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31671169	A	A	31671169	1	1	9	0	1	0	0	0	0	0	0	0	2120	667	23	1		1	C20orf186	20	31671169	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9770	31671169	31354351	17235	25386											
C20orf186	149954	broad.mit.edu	37	chr20	31673805	31673805	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtgactcatggtctccCtggccccttggcctcctcca	12	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31673805	A	A	31673805	1	1	9	0	1	0	0	0	0	0	0	0	2120	696	24	2		2	C20orf186	20	31673805	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2636	31673805	31351715	17236	25387											
C20orf186	149954	broad.mit.edu	37	chr20	31682941	31682941	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttaccacagccacactGggagccctgatccccaaggt	8	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31682941	T	T	31682941	2	4	9	1	0	0	0	0	0	0	0	1	2120	1335	47	2		2	C20orf186	20	31682941	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9136	31682941	31342579	17237	25388											
C20orf186	149954	broad.mit.edu	37	chr20	31685481	31685481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatccaggtgctgaaccCaccatctgtgatgctgcaga	11	12	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31685481	A	A	31685481	3	1	9	1	0	0	0	0	1	0	0	0	2120	594	21	2	1499	2	C20orf186	20	31685481	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2540	31685481	31340039	17238	25389											
C20orf70	140683	broad.mit.edu	37	chr20	31766112	31766112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaggcctggctgtatcCtctgagcacttttccttcgg	10	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31766112	A	A	31766112	1	1	9	0	1	0	0	0	0	0	0	0	2138	696	24	2		2	C20orf70	20	31766112	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80631	31766112	31259408	17239	25390											
C20orf71	128861	broad.mit.edu	37	chr20	31813170	31813170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagatctcatccttcccccGggatctgctcctcctcccat	6	19	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31813170	T	T	31813170	1	4	9	0	1	0	0	0	0	0	0	0	2139	1131	39	1		1	C20orf71	20	31813170	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	47058	31813170	31212350	17240	25391											
PLUNC	51297	broad.mit.edu	37	chr20	31825551	31825551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcctcattgtcttctacGggctgttagcccagaccatg	12	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31825551	T	T	31825551	3	4	9	1	0	0	0	0	1	0	0	0	12210	1116	39	1	36	1	PLUNC	20	31825551	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12381	31825551	31199969	17241	25392											
C20orf114	92747	broad.mit.edu	37	chr20	31889059	31889059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaagttgttggactcacaGggaaaggtgaccaagtggtt	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31889059	T	T	31889059	3	4	9	1	0	0	0	0	1	0	0	0	2104	991	35	2	798	2	C20orf114	20	31889059	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63508	31889059	31136461	17242	25393											
C20orf114	92747	broad.mit.edu	37	chr20	31891814	31891814	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaggtgaccaacttatactCaacttgaataacatcaggta	6	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31891814	A	A	31891814	2	1	9	1	0	0	0	0	0	0	0	1	2104	813	29	3		3	C20orf114	20	31891814	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2755	31891814	31133706	17243	25394											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31954777	31954777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttaattttacctcttccGggacatcatccttcagccta	5	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31954777	T	T	31954777	3	4	9	1	0	0	0	0	1	0	0	0	3175	1116	39	1	345	1	CDK5RAP1	20	31954777	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	62963	31954777	31070743	17244	25395											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31958354	31958354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgttgtactgaacttccCggagcaaagagactgtctgg	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31958354	A	A	31958354	3	1	9	1	0	0	0	0	1	0	0	0	3175	652	23	1	436	1	CDK5RAP1	20	31958354	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3577	31958354	31067166	17245	25396											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31984924	31984924	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagacatcaccagcatttaTtgaacactatggacaggaca	7	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31984924	C	C	31984924	1	2	9	0	1	0	0	0	0	0	0	0	3175	1508	52	5		5	CDK5RAP1	20	31984924	Intron	SNP	T	TCGA-05-4396-01A-21D-1855-08	26570	31984924	31040596	17246	25397											
SNTA1	6640	broad.mit.edu	37	chr20	32026690	32026690	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcttgaggacctgcacCgcctcatcatgggtagcaga	11	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32026690	A	A	32026690	2	1	9	1	0	0	0	0	0	0	0	1	14985	639	23	1		1	SNTA1	20	32026690	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41766	32026690	30998830	17247	25398											
CBFA2T2	9139	broad.mit.edu	37	chr20	32194689	32194689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctctagggaagtatgttGgtatttcaaattgttgtctg	11	5	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32194689	T	T	32194689	1	4	9	0	1	0	0	0	0	0	0	0	2723	1363	47	2		2	CBFA2T2	20	32194689	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	167999	32194689	30830831	17248	25399											
ZNF341	84905	broad.mit.edu	37	chr20	32332895	32332895	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcttcccactactctgcGggtatgaccccagatgacga	9	15	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32332895	T	T	32332895	1	4	9	0	1	0	0	0	0	0	0	0	17983	1131	39	1		1	ZNF341	20	32332895	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	138206	32332895	30692625	17249	25400											
ZNF341	84905	broad.mit.edu	37	chr20	32344995	32344995	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagtatatcccaccccCacagtgtacagccctggcaa	6	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32344995	A	A	32344995	2	1	9	1	0	0	0	0	0	0	0	1	17983	581	21	2		2	ZNF341	20	32344995	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12100	32344995	30680525	17250	25401											
AHCY	191	broad.mit.edu	37	chr20	32878689	32878689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcatcacatctgtggccCgcttgatgccatctatgagg	9	12	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32878689	A	A	32878689	3	1	9	1	0	0	0	0	1	0	0	0	409	652	23	1	704	1	AHCY	20	32878689	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	533694	32878689	30146831	17251	25402											
ITCH	83737	broad.mit.edu	37	chr20	32981729	32981729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttactttatttttcccCgtatgattaaaaaataatcc	3	8	0	1	rs35047936		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32981729	A	A	32981729	1	1	9	0	1	0	0	0	0	0	0	0	7938	667	23	1		1	ITCH	20	32981729	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	103040	32981729	30043791	17252	25403											
ITCH	83737	broad.mit.edu	37	chr20	33028001	33028001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccacttctgaaagtgatGggtctagtacaggctctctg	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33028001	T	T	33028001	3	4	9	1	0	0	0	0	1	0	0	0	7938	1348	47	2	747	2	ITCH	20	33028001	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	46272	33028001	29997519	17253	25404											
ITCH	83737	broad.mit.edu	37	chr20	33033182	33033182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggccaacactggaatcCgtccggaactatgaacaatg	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33033182	A	A	33033182	2	1	9	1	0	0	0	0	0	0	0	1	7938	639	23	1		1	ITCH	20	33033182	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5181	33033182	29992338	17254	25405											
ITCH	83737	broad.mit.edu	37	chr20	33049889	33049889	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttatgttttttcctgtGtttcgtagtcaattaaatga	7	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33049889	A	A	33049889	1	1	9	0	1	0	0	0	0	0	0	0	7938	1392	48	4		4	ITCH	20	33049889	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16707	33049889	29975631	17255	25406											
ITCH	83737	broad.mit.edu	37	chr20	33057838	33057838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatatatgtcctgttaaccCttgttcttcctcagagacaa	5	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33057838	A	A	33057838	1	1	9	0	1	0	0	0	0	0	0	0	7938	696	24	2		2	ITCH	20	33057838	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7949	33057838	29967682	17256	25407											
ITCH	83737	broad.mit.edu	37	chr20	33057860	33057860	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcttcctcagagacaatGgacctcagatagcctatgtt	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33057860	T	T	33057860	4	4	9	1	0	0	0	0	0	1	0	0	7938	1349	47	2	1482	2	ITCH	20	33057860	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22	33057860	29967660	17257	25408											
ITCH	83737	broad.mit.edu	37	chr20	33065686	33065686	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagtgataatatgaatactCagaacttagttcctttcctc	6	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33065686	A	A	33065686	1	1	9	0	1	0	0	0	0	0	0	0	7938	841	29	3		3	ITCH	20	33065686	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7826	33065686	29959834	17258	25409											
ITCH	83737	broad.mit.edu	37	chr20	33068381	33068381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtacagttattttaagcGgtcttgtttccttttttcat	6	6	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33068381	T	T	33068381	1	4	9	0	1	0	0	0	0	0	0	0	7938	1131	39	1		1	ITCH	20	33068381	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2695	33068381	29957139	17259	25410											
ITCH	83737	broad.mit.edu	37	chr20	33077565	33077565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttaatcttagtctttcCtatgtccagctgtttttgta	6	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33077565	A	A	33077565	1	1	9	0	1	0	0	0	0	0	0	0	7938	696	24	2		2	ITCH	20	33077565	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	9184	33077565	29947955	17260	25411											
NCOA6	23054	broad.mit.edu	37	chr20	33329374	33329374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgacctcactcaattcGggatgcacaagggatgaaca	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33329374	T	T	33329374	2	4	9	1	0	0	0	0	0	0	0	1	10328	1103	39	1		1	NCOA6	20	33329374	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	251809	33329374	29696146	17261	25412											
NCOA6	23054	broad.mit.edu	37	chr20	33329676	33329676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaggatccgaaggctgccCatcctttttggactgatctt	10	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33329676	A	A	33329676	3	1	9	1	0	0	0	0	1	0	0	0	10328	594	21	2	1827	2	NCOA6	20	33329676	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	302	33329676	29695844	17262	25413											
NCOA6	23054	broad.mit.edu	37	chr20	33330374	33330374	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaggttctgtgctgggaGggcggttgttgggtgtctga	19	5	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33330374	C	C	33330374	3	2	9	1	0	0	0	0	1	0	0	0	10328	1000	35	4	2525	4	NCOA6	20	33330374	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	698	33330374	29695146	17263	25414											
NCOA6	23054	broad.mit.edu	37	chr20	33337937	33337937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccatcatttgtgggccCtgctgggaaagcatctgctt	13	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33337937	A	A	33337937	3	1	9	1	0	0	0	0	1	0	0	0	10328	680	24	2	4158	2	NCOA6	20	33337937	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7563	33337937	29687583	17264	25415											
NCOA6	23054	broad.mit.edu	37	chr20	33338252	33338252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaattcccatgaggctGggctgcatcatatttggcgg	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33338252	T	T	33338252	2	4	9	1	0	0	0	0	0	0	0	1	10328	1335	47	2		2	NCOA6	20	33338252	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	315	33338252	29687268	17265	25416											
ACSS2	55902	broad.mit.edu	37	chr20	33462829	33462829	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggaggtgggagctgccCgcttcaggcctcagaatcac	13	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33462829	A	A	33462829	1	1	9	0	1	0	0	0	0	0	0	0	189	667	23	1		1	ACSS2	20	33462829	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	124577	33462829	29562691	17266	25417											
ACSS2	55902	broad.mit.edu	37	chr20	33501515	33501515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcattcactcaatccctGgggctttcttctctccctca	4	16	7	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33501515	T	T	33501515	1	4	9	0	1	0	0	0	0	0	0	0	189	1363	47	2		2	ACSS2	20	33501515	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38686	33501515	29524005	17267	25418											
ACSS2	55902	broad.mit.edu	37	chr20	33508905	33508905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagcacccacagccatcCgtctgctcatgaagtttgga	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33508905	A	A	33508905	3	1	9	1	0	0	0	0	1	0	0	0	189	652	23	1	1321	1	ACSS2	20	33508905	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7390	33508905	29516615	17268	25419											
ACSS2	55902	broad.mit.edu	37	chr20	33509528	33509528	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggggttctggggccccttGggagttgagtcagagttgcc	17	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33509528	C	C	33509528	1	2	9	0	1	0	0	0	0	0	0	0	189	1363	47	4		4	ACSS2	20	33509528	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	623	33509528	29515992	17269	25420											
ACSS2	55902	broad.mit.edu	37	chr20	33509634	33509634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaatcctgaatgagtccGgggaagagttggaaggtgaa	15	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33509634	T	T	33509634	3	4	9	1	0	0	0	0	1	0	0	0	189	1116	39	1	1606	1	ACSS2	20	33509634	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	106	33509634	29515886	17270	25421											
ACSS2	55902	broad.mit.edu	37	chr20	33514887	33514887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagaggtctgtggttcccCagggaaaatcatgaggcgag	14	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33514887	A	A	33514887	1	1	9	0	1	0	0	0	0	0	0	0	189	609	21	2		2	ACSS2	20	33514887	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	5253	33514887	29510633	17271	25422											
GSS	2937	broad.mit.edu	37	chr20	33517358	33517358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtccttcagctgtttcaGggcctgtaccatttcctccc	7	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33517358	T	T	33517358	3	4	9	1	0	0	0	0	1	0	0	0	6895	991	35	2	285	2	GSS	20	33517358	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2471	33517358	29508162	17272	25423											
GSS	2937	broad.mit.edu	37	chr20	33524850	33524850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaagagcacaggtggccCgaggctactatagaacttgt	14	8	0	2	rs140322500	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33524850	A	A	33524850	1	1	9	0	1	0	0	0	0	0	0	0	6895	667	23	1		1	GSS	20	33524850	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7492	33524850	29500670	17273	25424											
MYH7B	57644	broad.mit.edu	37	chr20	33565685	33565685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctagtatctggtcttgtGggttgggggatcgtgcccta	15	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33565685	T	T	33565685	1	4	9	0	1	0	0	0	0	0	0	0	10134	1363	47	2		2	MYH7B	20	33565685	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	40835	33565685	29459835	17274	25425											
MYH7B	57644	broad.mit.edu	37	chr20	33567504	33567504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagctgcagcccatgaaccCgcctcgcttcgacttactgg	10	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33567504	A	A	33567504	3	1	9	1	0	0	0	0	1	0	0	0	10134	652	23	1	383	1	MYH7B	20	33567504	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1819	33567504	29458016	17275	25426											
MYH7B	57644	broad.mit.edu	37	chr20	33568487	33568487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcgccgctcagattcccCgccccatatatatgcggtgg	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33568487	A	A	33568487	3	1	9	1	0	0	0	0	1	0	0	0	10134	652	23	1	597	1	MYH7B	20	33568487	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	983	33568487	29457033	17276	25427											
MYH7B	57644	broad.mit.edu	37	chr20	33574677	33574677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccctcccttctctgccCtgtgtccccagacatgctgc	7	19	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33574677	A	A	33574677	1	1	9	0	1	0	0	0	0	0	0	0	10134	696	24	2		2	MYH7B	20	33574677	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6190	33574677	29450843	17277	25428											
MYH7B	57644	broad.mit.edu	37	chr20	33588045	33588045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtccttgggcatttgtaaGgacaggtatgcccttacgag	13	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33588045	T	T	33588045	1	4	9	0	1	0	0	0	0	0	0	0	10134	1015	35	2		2	MYH7B	20	33588045	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	13368	33588045	29437475	17278	25429											
TRPC4AP	26133	broad.mit.edu	37	chr20	33632405	33632405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcatcattccctgtatcCatctctgaaatggtgacagc	7	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33632405	A	A	33632405	3	1	9	1	0	0	0	0	1	0	0	0	16706	594	21	2	1677	2	TRPC4AP	20	33632405	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44360	33632405	29393115	17279	25430											
EDEM2	55741	broad.mit.edu	37	chr20	33703296	33703296	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggtgaagggctgactGgggcagctgagaagtgggac	20	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33703296	T	T	33703296	2	4	9	1	0	0	0	0	0	0	0	1	4952	1335	47	2		2	EDEM2	20	33703296	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	70891	33703296	29322224	17280	25431											
EDEM2	55741	broad.mit.edu	37	chr20	33762500	33762500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgaagctgactctgccCgcaggcctccaaagacttca	10	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33762500	A	A	33762500	1	1	9	0	1	0	0	0	0	0	0	0	4952	667	23	1		1	EDEM2	20	33762500	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	59204	33762500	29263020	17281	25432											
MMP24	10893	broad.mit.edu	37	chr20	33834686	33834686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttccctatgactcacGggcatctgcgctgcactcag	9	15	4	1	rs140648293	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33834686	T	T	33834686	3	4	9	1	0	0	0	0	1	0	0	0	9755	1116	39	1	46	1	MMP24	20	33834686	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	72186	33834686	29190834	17282	25433											
MMP24	10893	broad.mit.edu	37	chr20	33834880	33834880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtgtacaccccatgccCatcctcccttcctatctttt	4	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33834880	A	A	33834880	1	1	9	0	1	0	0	0	0	0	0	0	9755	609	21	2		2	MMP24	20	33834880	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	194	33834880	29190640	17283	25434											
UQCC	55245	broad.mit.edu	37	chr20	33981974	33981974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcggctgcatactggaaccCactgagaaatgctagtctgg	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33981974	A	A	33981974	3	1	9	1	0	0	0	0	1	0	0	0	17141	595	21	2	885	2	UQCC	20	33981974	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	147094	33981974	29043546	17284	25435											
GDF5	8200	broad.mit.edu	37	chr20	34022071	34022071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagtggccagtggggccCgccgttttcgccgctggctg	18	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34022071	A	A	34022071	3	1	9	1	0	0	0	0	1	0	0	0	6380	652	23	1	367	1	GDF5	20	34022071	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40097	34022071	29003449	17285	25436											
RBM12	10137	broad.mit.edu	37	chr20	34242519	34242519	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattcaagggcggcatgccCgacatgggtggcagtggggt	19	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34242519	A	A	34242519	2	1	9	1	0	0	0	0	0	0	0	1	13221	639	23	1		1	RBM12	20	34242519	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	220448	34242519	28783001	17286	25437											
RBM12	10137	broad.mit.edu	37	chr20	34242571	34242571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggaactgggggaatcGggggcacaggaggcacagga	19	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34242571	T	T	34242571	3	4	9	1	0	0	0	0	1	0	0	0	13221	1116	39	1	2128	1	RBM12	20	34242571	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52	34242571	28782949	17287	25438											
NFS1	9054	broad.mit.edu	37	chr20	34278340	34278340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagccactcctacctttaGgtcaatgatcccactcttct	4	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34278340	T	T	34278340	3	4	9	1	0	0	0	0	1	0	0	0	10480	991	35	2	853	2	NFS1	20	34278340	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35769	34278340	28747180	17288	25439											
PHF20	51230	broad.mit.edu	37	chr20	34435327	34435327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgattgtcgtttttaccCggccaaagtcactgctgtta	9	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34435327	A	A	34435327	3	1	9	1	0	0	0	0	1	0	0	0	11926	652	23	1	321	1	PHF20	20	34435327	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	156987	34435327	28590193	17289	25440											
PHF20	51230	broad.mit.edu	37	chr20	34515764	34515764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactggaagaaaatgtgccCgagaaatacacctgttatgt	9	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34515764	A	A	34515764	2	1	9	1	0	0	0	0	0	0	0	1	11926	639	23	1		1	PHF20	20	34515764	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80437	34515764	28509756	17290	25441											
C20orf152	140894	broad.mit.edu	37	chr20	34560629	34560629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggcctcaggggattcCgggaatatcaaatcattgag	12	9	3	1	rs150690141	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34560629	A	A	34560629	2	1	9	1	0	0	0	0	0	0	0	1	2114	643	23	1		1	C20orf152	20	34560629	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44865	34560629	28464891	17291	25442											
C20orf152	140894	broad.mit.edu	37	chr20	34618542	34618542	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccatcaaagcacctcGgtacaaaatccgagaactct	6	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34618542	T	T	34618542	1	4	9	0	1	0	0	0	0	0	0	0	2114	1116	39	1		1	C20orf152	20	34618542	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	57913	34618542	28406978	17292	25443											
C20orf152	140894	broad.mit.edu	37	chr20	34618583	34618583	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttagtgtaagagcacaGgggtccttatttaggacaaa	12	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34618583	T	T	34618583	1	4	9	0	1	0	0	0	0	0	0	0	2114	1015	35	2		2	C20orf152	20	34618583	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	41	34618583	28406937	17293	25444											
EPB41L1	2036	broad.mit.edu	37	chr20	34765884	34765884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctccttagaaacatggccGgggccaggtgctgtttgacc	12	13	0	2	rs6121176		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34765884	T	T	34765884	3	4	9	1	0	0	0	0	1	0	0	0	5194	1116	39	1	363	1	EPB41L1	20	34765884	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	147301	34765884	28259636	17294	25445											
C20orf4	25980	broad.mit.edu	37	chr20	34827761	34827761	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgttcatcaaagaaaaaGggttcttttggtcacccacc	8	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34827761	T	T	34827761	1	4	9	1	0	0	0	0	0	0	0	0	2133	1015	35	2		2	C20orf4	20	34827761	Translation_Start_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	61877	34827761	28197759	17295	25446											
DLGAP4	22839	broad.mit.edu	37	chr20	35071136	35071136	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctttcctgcagatttttGgacaggcctccctgatcccc	7	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35071136	T	T	35071136	4	4	9	1	0	0	0	0	0	1	0	0	4602	1349	47	2	1377	2	DLGAP4	20	35071136	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	243375	35071136	27954384	17296	25447			21	24		5	5	156	N	G_C	2.455633e-06
DLGAP4	22839	broad.mit.edu	37	chr20	35071196	35071196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggtcagtatgtttgccCttctcttccaccccaatccc	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35071196	A	A	35071196	1	1	9	0	1	0	0	0	0	0	0	0	4602	696	24	2		2	DLGAP4	20	35071196	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	60	35071196	27954324	17297	25448			21	24		5	5	156	N	G_C	2.455633e-06
DLGAP4	22839	broad.mit.edu	37	chr20	35071230	35071230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcccagagtgtaggcctGggccttaggcctgccctctg	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35071230	T	T	35071230	1	4	9	0	1	0	0	0	0	0	0	0	4602	1363	47	2		2	DLGAP4	20	35071230	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34	35071230	27954290	17298	25449			21	24		5	5	156	N	G_C	2.455633e-06
DLGAP4	22839	broad.mit.edu	37	chr20	35071259	35071259	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgccctctgagtggtccCagcacccggcccaggctggt	13	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35071259	G	G	35071259	1	3	9	0	1	0	0	0	0	0	0	0	4602	609	21	4		4	DLGAP4	20	35071259	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29	35071259	27954261	17299	25450			21	24		5	5	156	N	G_C	2.455633e-06
DLGAP4	22839	broad.mit.edu	37	chr20	35071291	35071291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctggtacaagcagagcCatcaccaggaaagccacttc	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35071291	A	A	35071291	1	1	9	0	1	0	0	0	0	0	0	0	4602	609	21	2		2	DLGAP4	20	35071291	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	35071291	27954229	17300	25451			21	24		5	5	156	N	G_C	2.455633e-06
C20orf24	55969	broad.mit.edu	37	chr20	35240529	35240529	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacaggaacttgatcgttGgggaaccccagccccttgga	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35240529	T	T	35240529	1	4	9	0	1	0	0	0	0	0	0	0	2127	1357	47	2		2	C20orf24	20	35240529	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	169238	35240529	27784991	17301	25452											
C20orf24	55969	broad.mit.edu	37	chr20	35240562	35240562	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttggaacttggaagaccCgtgtttcctggaccgcgaat	11	12	0	1	rs138333574		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35240562	A	A	35240562	1	1	9	0	1	0	0	0	0	0	0	0	2127	652	23	1		1	C20orf24	20	35240562	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	33	35240562	27784958	17302	25453											
DSN1	79980	broad.mit.edu	37	chr20	35395213	35395213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgaagcccttagtgtccCttaggaaaggttcaagtttc	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35395213	A	A	35395213	3	1	9	1	0	0	0	0	1	0	0	0	4820	681	24	2	637	2	DSN1	20	35395213	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154651	35395213	27630307	17303	25454											
DSN1	79980	broad.mit.edu	37	chr20	35399338	35399338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgtttctttcatacttgctCgccgccaggattgcctcctg	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35399338	A	A	35399338	3	1	9	1	0	0	0	0	1	0	0	0	4820	884	31	3	813	3	DSN1	20	35399338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4125	35399338	27626182	17304	25455											
DSN1	79980	broad.mit.edu	37	chr20	35399507	35399507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgccttgattcatctccaGggaggcagatgttttagcaa	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35399507	T	T	35399507	3	4	9	1	0	0	0	0	1	0	0	0	4820	991	35	2	982	2	DSN1	20	35399507	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	169	35399507	27626013	17305	25456											
C20orf117	140710	broad.mit.edu	37	chr20	35422879	35422879	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctggatcccctggctcGgagctcacaaagccaaaggc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35422879	T	T	35422879	2	4	9	1	0	0	0	0	0	0	0	1	2105	1103	39	1		1	C20orf117	20	35422879	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	23372	35422879	27602641	17306	25457											
C20orf117	140710	broad.mit.edu	37	chr20	35433238	35433238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaccacggcgttcatccCggagcagccagcacagctcc	10	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35433238	A	A	35433238	3	1	9	1	0	0	0	0	1	0	0	0	2105	652	23	1	2084	1	C20orf117	20	35433238	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10359	35433238	27592282	17307	25458											
C20orf118	140711	broad.mit.edu	37	chr20	35504627	35504627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggtaagggttccaactcCgtctgtggtgcaggttggga	16	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35504627	A	A	35504627	1	1	9	0	1	0	0	0	0	0	0	0	2106	667	23	1		1	C20orf118	20	35504627	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	71389	35504627	27520893	17308	25459											
SAMHD1	25939	broad.mit.edu	37	chr20	35545172	35545172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtctacttcacagacacGggcaaacttaataaagcgct	7	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35545172	T	T	35545172	3	4	9	1	0	0	0	0	1	0	0	0	13939	1116	39	1	897	1	SAMHD1	20	35545172	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	40545	35545172	27480348	17309	25460											
RBL1	5933	broad.mit.edu	37	chr20	35672635	35672635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagcccctcttctgagcGgatcaccacctcaataacct	7	15	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35672635	T	T	35672635	3	4	9	1	0	0	0	0	1	0	0	0	13217	1116	39	1	1631	1	RBL1	20	35672635	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	127463	35672635	27352885	17310	25461											
RBL1	5933	broad.mit.edu	37	chr20	35690548	35690548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgtcagtttccctaatGgggtgtcacgagtgaacttt	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35690548	T	T	35690548	3	4	9	1	0	0	0	0	1	0	0	0	13217	1348	47	2	2253	2	RBL1	20	35690548	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17913	35690548	27334972	17311	25462											
C20orf132	140699	broad.mit.edu	37	chr20	35743775	35743775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcatatcaccttttctcCaaatcgcacgtcacctggta	7	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35743775	A	A	35743775	1	1	9	0	1	0	0	0	0	0	0	0	2108	609	21	2		2	C20orf132	20	35743775	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	53227	35743775	27281745	17312	25463											
C20orf132	140699	broad.mit.edu	37	chr20	35748190	35748190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagccagtctttaaagcGggcaacagagtatatgctgg	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35748190	T	T	35748190	3	4	9	1	0	0	0	0	1	0	0	0	2108	1116	39	1	875	1	C20orf132	20	35748190	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4415	35748190	27277330	17313	25464											
C20orf132	140699	broad.mit.edu	37	chr20	35783517	35783517	+	Silent	SNP	C	A	A													agaacttgagccatgctggcCgtggcccgttcccgctcatg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35783517	A	A	35783517	2	1	9	1	0	0	0	0	0	0	0	1	2108	639	23	1		1	C20orf132	20	35783517	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35327	35783517	27242003	17314	25465	167	2									
C20orf132	140699	broad.mit.edu	37	chr20	35783524	35783524	+	Missense_Mutation	SNP	C	A	A													gagccatgctggccgtggccCgttcccgctcatggtctttg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35783524	A	A	35783524	3	1	9	1	0	0	0	0	1	0	0	0	2108	652	23	1	2188	1	C20orf132	20	35783524	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	35783524	27241996	17315	25466	167	2									
RPN2	6185	broad.mit.edu	37	chr20	35833182	35833182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatggcaggaccttgttgctCgcctggatgaactcgggggc	15	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35833182	A	A	35833182	3	1	9	1	0	0	0	0	1	0	0	0	13719	884	31	3	590	3	RPN2	20	35833182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	49658	35833182	27192338	17316	25467											
MANBAL	63905	broad.mit.edu	37	chr20	35929816	35929816	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcccaagtcccacgaggcGgtgagtttttccctgggagc	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35929816	T	T	35929816	2	4	9	1	0	0	0	0	0	0	0	1	9312	1130	39	1		1	MANBAL	20	35929816	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	96634	35929816	27095704	17317	25468											
SRC	6714	broad.mit.edu	37	chr20	36022639	36022639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctcaatgcagagaaccCgagagggaccttcctcgtgc	11	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36022639	A	A	36022639	3	1	9	1	0	0	0	0	1	0	0	0	15252	652	23	1	526	1	SRC	20	36022639	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	92823	36022639	27002881	17318	25469											
SRC	6714	broad.mit.edu	37	chr20	36024669	36024669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcttctacatcacctccCgcacccagttcaacagcctg	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36024669	A	A	36024669	3	1	9	1	0	0	0	0	1	0	0	0	15252	652	23	1	676	1	SRC	20	36024669	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2030	36024669	27000851	17319	25470											
KIAA0406	9675	broad.mit.edu	37	chr20	36624803	36624803	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcctcttgtaatttcacGggctgtttgacactgaggta	11	9	2	2	rs140168073		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36624803	T	T	36624803	2	4	9	1	0	0	0	0	0	0	0	1	8243	1103	39	1		1	KIAA0406	20	36624803	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	600134	36624803	26400717	17320	25471											
KIAA0406	9675	broad.mit.edu	37	chr20	36625243	36625243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagtaaactggtccagccCtggcactgatgggggcctgg	16	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36625243	A	A	36625243	3	1	9	1	0	0	0	0	1	0	0	0	8243	681	24	2	375	2	KIAA0406	20	36625243	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	440	36625243	26400277	17321	25472											
KIAA0406	9675	broad.mit.edu	37	chr20	36631153	36631153	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgggtgtcattctcatcCactttgggagggactgactg	14	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36631153	A	A	36631153	2	1	9	1	0	0	0	0	0	0	0	1	8243	581	21	2		2	KIAA0406	20	36631153	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5910	36631153	26394367	17322	25473											
KIAA0406	9675	broad.mit.edu	37	chr20	36640255	36640255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagccttctccagtactGgataaagggctgacatcaag	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36640255	T	T	36640255	3	4	9	1	0	0	0	0	1	0	0	0	8243	1348	47	2	1333	2	KIAA0406	20	36640255	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9102	36640255	26385265	17323	25474											
KIAA0406	9675	broad.mit.edu	37	chr20	36641045	36641045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttgccctggtcatcttGggagttcattaggcgaggaa	13	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36641045	T	T	36641045	3	4	9	1	0	0	0	0	1	0	0	0	8243	1357	47	2	2123	2	KIAA0406	20	36641045	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	790	36641045	26384475	17324	25475											
KIAA0406	9675	broad.mit.edu	37	chr20	36641613	36641613	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaggcaaacaaatccccCagctgcttttgttcaagttc	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36641613	A	A	36641613	2	1	9	1	0	0	0	0	0	0	0	1	8243	581	21	2		2	KIAA0406	20	36641613	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	568	36641613	26383907	17325	25476											
RPRD1B	58490	broad.mit.edu	37	chr20	36718150	36718150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atacaaacagaagcttgcacGagtaacccaggtccgcaagg	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36718150	T	T	36718150	3	4	9	1	0	0	0	0	1	0	0	0	13727	1058	37	3	880	3	RPRD1B	20	36718150	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	76537	36718150	26307370	17326	25477											
TGM2	7052	broad.mit.edu	37	chr20	36758680	36758680	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccttcagcttgtcgctctCgaagttcaccaccagcttgt	8	14	3	0	rs150186613		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36758680	A	A	36758680	4	1	9	1	0	0	0	0	0	1	0	0	15953	893	31	3	62	3	TGM2	20	36758680	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40530	36758680	26266840	17327	25478											
KIAA1755	85449	broad.mit.edu	37	chr20	36851966	36851966	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccccaggggggtcggcctTctcgaattcctcgatggaag	13	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36851966	A	A	36851966	4	1	9	1	0	0	0	0	0	1	0	0	8327	1792	62	5	1384	5	KIAA1755	20	36851966	Nonsense_Mutation	SNP	T	TCGA-05-4396-01A-21D-1855-08	93286	36851966	26173554	17328	25479											
BPI	671	broad.mit.edu	37	chr20	36946847	36946847	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccaattctgtatcctcCgagctgcaaccttatttcca	6	13	1	1	rs151215961	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36946847	A	A	36946847	2	1	9	1	0	0	0	0	0	0	0	1	1499	639	23	1		1	BPI	20	36946847	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	94881	36946847	26078673	17329	25480											
LBP	3929	broad.mit.edu	37	chr20	36989442	36989442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggacaccccatccatccCgggacacttttatttctgtt	7	13	1	0	rs149908013	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36989442	A	A	36989442	1	1	9	0	1	0	0	0	0	0	0	0	8723	667	23	1		1	LBP	20	36989442	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42595	36989442	26036078	17330	25481											
LBP	3929	broad.mit.edu	37	chr20	36995471	36995471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccgacccttcgtcccacGggtaaggagtcccttagttc	9	15	0	0	rs2232610	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36995471	T	T	36995471	3	4	9	1	0	0	0	0	1	0	0	0	8723	1130	39	1	1014	1	LBP	20	36995471	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6029	36995471	26030049	17331	25482											
RALGAPB	57148	broad.mit.edu	37	chr20	37121624	37121624	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgacccttccattggatGgagagactgtaaaatattgc	10	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37121624	T	T	37121624	4	4	9	1	0	0	0	0	0	1	0	0	13123	1349	47	2	244	2	RALGAPB	20	37121624	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	126153	37121624	25903896	17332	25483											
RALGAPB	57148	broad.mit.edu	37	chr20	37137768	37137768	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgcatttaaagttccCgatgaagatgccagtctgat	8	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37137768	A	A	37137768	2	1	9	1	0	0	0	0	0	0	0	1	13123	639	23	1		1	RALGAPB	20	37137768	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16144	37137768	25887752	17333	25484											
RALGAPB	57148	broad.mit.edu	37	chr20	37146163	37146163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaggtatttctagacccCgatcagacagtgctccccca	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37146163	A	A	37146163	2	1	9	1	0	0	0	0	0	0	0	1	13123	644	23	1		1	RALGAPB	20	37146163	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8395	37146163	25879357	17334	25485											
RALGAPB	57148	broad.mit.edu	37	chr20	37187041	37187041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctcttgccatgtcgtcCttttgacacagtttttattt	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37187041	A	A	37187041	3	1	9	1	0	0	0	0	1	0	0	0	13123	681	24	2	3562	2	RALGAPB	20	37187041	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	40878	37187041	25838479	17335	25486											
RALGAPB	57148	broad.mit.edu	37	chr20	37202915	37202915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatccctcttgtggatgGgatgattgtcagcaggcgag	15	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37202915	T	T	37202915	3	4	9	1	0	0	0	0	1	0	0	0	13123	1232	43	2	4375	2	RALGAPB	20	37202915	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15874	37202915	25822605	17336	25487											
ACTR5	79913	broad.mit.edu	37	chr20	37394883	37394883	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccttgggtttttaaagccCgtgtttaacttggcagcata	9	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37394883	A	A	37394883	2	1	9	1	0	0	0	0	0	0	0	1	215	639	23	1		1	ACTR5	20	37394883	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	191968	37394883	25630637	17337	25488											
PPP1R16B	26051	broad.mit.edu	37	chr20	37518206	37518206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacacccagtgtgcaacGggaagctcactcctgtaccc	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37518206	T	T	37518206	1	4	9	0	1	0	0	0	0	0	0	0	12467	1131	39	1		1	PPP1R16B	20	37518206	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	123323	37518206	25507314	17338	25489											
FAM83D	81610	broad.mit.edu	37	chr20	37576658	37576658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaggtaagtctctaaccCgtccaaggcttattaatcta	6	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37576658	A	A	37576658	1	1	9	0	1	0	0	0	0	0	0	0	5689	667	23	1		1	FAM83D	20	37576658	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	58452	37576658	25448862	17339	25490											
FAM83D	81610	broad.mit.edu	37	chr20	37581170	37581170	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctatcagtaactgctcCgtgttcagactcctggtttc	7	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37581170	A	A	37581170	1	1	9	0	1	0	0	0	0	0	0	0	5689	667	23	1		1	FAM83D	20	37581170	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	4512	37581170	25444350	17340	25491											
DHX35	60625	broad.mit.edu	37	chr20	37632452	37632452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgagcactagctcgcactGggatgaagagacacctccga	11	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37632452	T	T	37632452	3	4	9	1	0	0	0	0	1	0	0	0	4548	1348	47	2	955	2	DHX35	20	37632452	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51282	37632452	25393068	17341	25492											
DHX35	60625	broad.mit.edu	37	chr20	37634873	37634873	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtggctttgtgaaactcCgagcctacaatcccaggaca	9	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37634873	A	A	37634873	2	1	9	1	0	0	0	0	0	0	0	1	4548	644	23	1		1	DHX35	20	37634873	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2421	37634873	25390647	17342	25493											
DHX35	60625	broad.mit.edu	37	chr20	37650492	37650492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttttacaggaaacttcGgctgttctcaggaaattcta	8	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37650492	T	T	37650492	3	4	9	1	0	0	0	0	1	0	0	0	4548	1116	39	1	1569	1	DHX35	20	37650492	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15619	37650492	25375028	17343	25494											
TOP1	7150	broad.mit.edu	37	chr20	39725993	39725993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaaggtactgtagccCatgtgttaatatcctagtac	10	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39725993	A	A	39725993	1	1	9	0	1	0	0	0	0	0	0	0	16487	609	21	2		2	TOP1	20	39725993	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2075501	39725993	23299527	17344	25495											
TOP1	7150	broad.mit.edu	37	chr20	39742748	39742748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagagtttgacttcctcGggaaggactccatcagatac	11	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39742748	T	T	39742748	3	4	9	1	0	0	0	0	1	0	0	0	16487	1116	39	1	1649	1	TOP1	20	39742748	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16755	39742748	23282772	17345	25496											
TOP1	7150	broad.mit.edu	37	chr20	39750610	39750610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgctcttgtctagagccCaggcctggttcttgaggact	13	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39750610	A	A	39750610	1	1	9	0	1	0	0	0	0	0	0	0	16487	609	21	2		2	TOP1	20	39750610	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7862	39750610	23274910	17346	25497											
PLCG1	5335	broad.mit.edu	37	chr20	39792300	39792300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccccaacctaccatcttGggttggacagggcagggact	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39792300	T	T	39792300	1	4	9	0	1	0	0	0	0	0	0	0	12130	1363	47	2		2	PLCG1	20	39792300	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	41690	39792300	23233220	17347	25498											
ZHX3	23051	broad.mit.edu	37	chr20	39830809	39830809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctgaataggtgtcaccCatccctttgtgaactgctgt	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39830809	A	A	39830809	3	1	9	1	0	0	0	0	1	0	0	0	17803	594	21	2	130	2	ZHX3	20	39830809	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38509	39830809	23194711	17348	25499											
ZHX3	23051	broad.mit.edu	37	chr20	39831768	39831768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcgtttggcagaagggtGggttgctagtgtggctgttg	18	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39831768	T	T	39831768	3	4	9	1	0	0	0	0	1	0	0	0	17803	1348	47	2	1089	2	ZHX3	20	39831768	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	959	39831768	23193752	17349	25500											
CHD6	84181	broad.mit.edu	37	chr20	40043835	40043835	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatacccaccaagattccCgcctgaagtgtctgctcctt	6	15	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40043835	A	A	40043835	2	1	9	1	0	0	0	0	0	0	0	1	3360	639	23	1		1	CHD6	20	40043835	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	212067	40043835	22981685	17350	25501											
CHD6	84181	broad.mit.edu	37	chr20	40049381	40049381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttacttttgaacagatctGggatataagccttgggtttc	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40049381	T	T	40049381	3	4	9	1	0	0	0	0	1	0	0	0	3360	1348	47	2	2281	2	CHD6	20	40049381	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5546	40049381	22976139	17351	25502											
CHD6	84181	broad.mit.edu	37	chr20	40049913	40049913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgcagcagagctcccCttcctttgaaatagacatca	6	14	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40049913	A	A	40049913	3	1	9	1	0	0	0	0	1	0	0	0	3360	681	24	2	2813	2	CHD6	20	40049913	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	532	40049913	22975607	17352	25503											
CHD6	84181	broad.mit.edu	37	chr20	40052214	40052214	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgttccaggctctcatcCgacttcttgtccaaacggga	8	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40052214	A	A	40052214	2	1	9	1	0	0	0	0	0	0	0	1	3360	639	23	1		1	CHD6	20	40052214	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2301	40052214	22973306	17353	25504											
CHD6	84181	broad.mit.edu	37	chr20	40076600	40076600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtagtacagcatccggactCgcaaaagtactctatgaaag	10	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40076600	A	A	40076600	3	1	9	1	0	0	0	0	1	0	0	0	3360	884	31	3	4508	3	CHD6	20	40076600	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24386	40076600	22948920	17354	25505											
CHD6	84181	broad.mit.edu	37	chr20	40141488	40141488	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgcaaaggccatacctcCgcctgccaggccagtgtaga	10	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40141488	A	A	40141488	2	1	9	1	0	0	0	0	0	0	0	1	3360	639	23	1		1	CHD6	20	40141488	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	64888	40141488	22884032	17355	25506											
CHD6	84181	broad.mit.edu	37	chr20	40141557	40141557	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaacagcaattgtttcCccatcatcatccaccacttt	3	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40141557	A	A	40141557	2	1	9	1	0	0	0	0	0	0	0	1	3360	610	22	2		2	CHD6	20	40141557	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	69	40141557	22883963	17356	25507											
CHD6	84181	broad.mit.edu	37	chr20	40141653	40141653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtagggcaaacacaccCgtcagagaagctctctgagt	10	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40141653	A	A	40141653	1	1	9	0	1	0	0	0	0	0	0	0	3360	667	23	1		1	CHD6	20	40141653	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	96	40141653	22883867	17357	25508											
CHD6	84181	broad.mit.edu	37	chr20	40161772	40161772	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgcccgaggcctcccgGggcttccgtgccttctttgc	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40161772	T	T	40161772	2	4	9	1	0	0	0	0	0	0	0	1	3360	1219	43	2		2	CHD6	20	40161772	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20119	40161772	22863748	17358	25509											
PTPRT	11122	broad.mit.edu	37	chr20	40770545	40770545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcttaggagctcccagaaGggcacctacaggatatgatg	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40770545	T	T	40770545	1	4	9	0	1	0	0	0	0	0	0	0	12920	1015	35	2		2	PTPRT	20	40770545	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	608773	40770545	22254975	17359	25510											
PTPRT	11122	broad.mit.edu	37	chr20	40827808	40827808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcacctgatcaatgtgtgGggttcacagcagaagtacta	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40827808	T	T	40827808	1	4	9	0	1	0	0	0	0	0	0	0	12920	1247	43	2		2	PTPRT	20	40827808	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	57263	40827808	22197712	17360	25511											
PTPRT	11122	broad.mit.edu	37	chr20	40944544	40944544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgaggctggaggcattcCgatagctcacgggcaccgaa	13	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40944544	A	A	40944544	3	1	9	1	0	0	0	0	1	0	0	0	12920	652	23	1	2508	1	PTPRT	20	40944544	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116736	40944544	22080976	17361	25512											
PTPRT	11122	broad.mit.edu	37	chr20	41306583	41306583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggtcgtgtgaggagcactCggatctcatactcaacatcg	11	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41306583	A	A	41306583	3	1	9	1	0	0	0	0	1	0	0	0	12920	884	31	3	3410	3	PTPRT	20	41306583	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	362039	41306583	21718937	17362	25513											
MYBL2	4605	broad.mit.edu	37	chr20	42343869	42343869	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcttgcaggccaagccCgagaaggcagcagtggccca	14	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42343869	A	A	42343869	2	1	9	1	0	0	0	0	0	0	0	1	10104	639	23	1		1	MYBL2	20	42343869	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1037286	42343869	20681651	17363	25514											
MYBL2	4605	broad.mit.edu	37	chr20	42344629	42344629	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaagacggtggcctgcGgggggaccagggaccagctt	18	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42344629	T	T	42344629	3	4	9	1	0	0	0	0	1	0	0	0	10104	1116	39	1	2059	1	MYBL2	20	42344629	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	760	42344629	20680891	17364	25515											
TOX2	84969	broad.mit.edu	37	chr20	42695511	42695511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaggttagtcctcgccCgtccctgcctttgtcctgcc	9	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42695511	A	A	42695511	1	1	9	0	1	0	0	0	0	0	0	0	16502	667	23	1		1	TOX2	20	42695511	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	350882	42695511	20330009	17365	25516											
JPH2	57158	broad.mit.edu	37	chr20	42806613	42806613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcgattttaacacatccCtaaaggaaaaaaggaaacag	9	7	0	0	rs36047938		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42806613	A	A	42806613	1	1	9	0	1	0	0	0	0	0	0	0	8031	695	24	2		2	JPH2	20	42806613	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	111102	42806613	20218907	17366	25517											
JPH2	57158	broad.mit.edu	37	chr20	42806704	42806704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagctgggatttgaaccCagatctgcctactctaagtc	9	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42806704	A	A	42806704	1	1	9	0	1	0	0	0	0	0	0	0	8031	609	21	2		2	JPH2	20	42806704	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	91	42806704	20218816	17367	25518											
GDAP1L1	78997	broad.mit.edu	37	chr20	42891867	42891867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctttcctattatctcccCaggacatttagccaatgcca	5	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42891867	A	A	42891867	1	1	9	0	1	0	0	0	0	0	0	0	6371	609	21	2		2	GDAP1L1	20	42891867	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	85163	42891867	20133653	17368	25519											
GDAP1L1	78997	broad.mit.edu	37	chr20	42891892	42891892	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttagccaatgccaccacGgacctcatgaaactggacca	7	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42891892	T	T	42891892	2	4	9	1	0	0	0	0	0	0	0	1	6371	1103	39	1		1	GDAP1L1	20	42891892	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	42891892	20133628	17369	25520											
R3HDML	140902	broad.mit.edu	37	chr20	42979316	42979316	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaggggcaactggattggcGagtccccgtacaagatggga	15	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42979316	T	T	42979316	4	4	9	1	0	0	0	0	0	1	0	0	12997	1059	37	3	664	3	R3HDML	20	42979316	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	87424	42979316	20046204	17370	25521											
HNF4A	3172	broad.mit.edu	37	chr20	43058064	43058064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaaattaagtcaaggtGgggcagggtgggaggggaga	21	2	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43058064	T	T	43058064	1	4	9	0	1	0	0	0	0	0	0	0	7320	1363	47	2		2	HNF4A	20	43058064	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78748	43058064	19967456	17371	25522											
SERINC3	10955	broad.mit.edu	37	chr20	43135478	43135478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatcatacctgaatttttGggtggatcgatataatagaa	8	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43135478	T	T	43135478	3	4	9	1	0	0	0	0	1	0	0	0	14194	1348	47	2	668	2	SERINC3	20	43135478	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	77414	43135478	19890042	17372	25523											
SERINC3	10955	broad.mit.edu	37	chr20	43135587	43135587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatatgtatagagcagccCgacacagatgattgacagga	11	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43135587	A	A	43135587	3	1	9	1	0	0	0	0	1	0	0	0	14194	652	23	1	777	1	SERINC3	20	43135587	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	109	43135587	19889933	17373	25524											
PABPC1L	80336	broad.mit.edu	37	chr20	43545421	43545421	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtgacgagcatggctccCggggtttcggctttgtccat	14	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43545421	A	A	43545421	2	1	9	1	0	0	0	0	0	0	0	1	11458	643	23	1		1	PABPC1L	20	43545421	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	409834	43545421	19480099	17374	25525											
TOMM34	10953	broad.mit.edu	37	chr20	43585084	43585084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttcaagtgacatgctgctCggttggagtagagaacactt	11	9	1	2	rs139426649		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43585084	A	A	43585084	3	1	9	1	0	0	0	0	1	0	0	0	16480	884	31	3	783	3	TOMM34	20	43585084	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39663	43585084	19440436	17375	25526											
TOMM34	10953	broad.mit.edu	37	chr20	43585114	43585114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaacactttcttcttctGggtctgaagaacctgcccag	9	11	4	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43585114	T	T	43585114	3	4	9	1	0	0	0	0	1	0	0	0	16480	1348	47	2	813	2	TOMM34	20	43585114	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	43585114	19440406	17376	25527											
PI3	5266	broad.mit.edu	37	chr20	43804750	43804750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgtgaaggctcttgcGggatggcctgtttcgttccc	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43804750	T	T	43804750	3	4	9	1	0	0	0	0	1	0	0	0	11965	1116	39	1	334	1	PI3	20	43804750	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	219636	43804750	19220770	17377	25528											
TP53TG5	27296	broad.mit.edu	37	chr20	44006794	44006794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgttaaggtcccctctaGggactcacccccagggtcta	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44006794	T	T	44006794	1	4	9	0	1	0	0	0	0	0	0	0	16515	1015	35	2		2	TP53TG5	20	44006794	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	202044	44006794	19018726	17378	25529											
SPINLW1	57119	broad.mit.edu	37	chr20	44174434	44174434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagagcggttttacaccCgtgtgccttagagagcatag	13	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44174434	A	A	44174434	1	1	9	0	1	0	0	0	0	0	0	0	15185	652	23	1		1	SPINLW1	20	44174434	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	167640	44174434	18851086	17379	25530											
WFDC8	90199	broad.mit.edu	37	chr20	44184605	44184605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactcctggtgttatcaccCaagtcataaaaggagccatg	8	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44184605	A	A	44184605	1	1	9	0	1	0	0	0	0	0	0	0	17483	609	21	2		2	WFDC8	20	44184605	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	10171	44184605	18840915	17380	25531											
WFDC9	259240	broad.mit.edu	37	chr20	44236826	44236826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaatcctgggataaatcCatttctaaaattaatagcat	5	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44236826	A	A	44236826	1	1	9	0	1	0	0	0	0	0	0	0	17484	609	21	2		2	WFDC9	20	44236826	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	52221	44236826	18788694	17381	25532											
SPINT4	391253	broad.mit.edu	37	chr20	44351075	44351075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgaataccctgttattGggtggtgttaataaaattgc	9	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44351075	T	T	44351075	3	4	9	1	0	0	0	0	1	0	0	0	15188	1339	47	2	71	2	SPINT4	20	44351075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	114249	44351075	18674445	17382	25533											
SPINT4	391253	broad.mit.edu	37	chr20	44352696	44352696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcaaaatacaaaccacCgtaaggaatctaatcctgtc	6	10	1	0	rs142613680	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44352696	A	A	44352696	3	1	9	1	0	0	0	0	1	0	0	0	15188	666	23	1	299	1	SPINT4	20	44352696	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1621	44352696	18672824	17383	25534											
SPINT4	391253	broad.mit.edu	37	chr20	44354235	44354235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcaaaaacctgtaacacCgatttgggtttttctttcct	5	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44354235	A	A	44354235	1	1	9	0	1	0	0	0	0	0	0	0	15188	667	23	1		1	SPINT4	20	44354235	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1539	44354235	18671285	17384	25535											
DNTTIP1	116092	broad.mit.edu	37	chr20	44433762	44433762	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agattaaacttcaccctcacGagcttctctattttttgcac	4	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44433762	T	T	44433762	1	4	9	0	1	0	0	0	0	0	0	0	4721	1073	37	3		3	DNTTIP1	20	44433762	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	79527	44433762	18591758	17385	25536											
TNNC2	7125	broad.mit.edu	37	chr20	44452743	44452743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatctcagccagctcctccGggtcgatgtagccgtctgca	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44452743	T	T	44452743	3	4	9	1	0	0	0	0	1	0	0	0	16448	1116	39	1	152	1	TNNC2	20	44452743	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18981	44452743	18572777	17386	25537											
TNNC2	7125	broad.mit.edu	37	chr20	44453140	44453140	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacacccgctcaccgtcctCatccacctcctcgatgatgg	8	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44453140	T	T	44453140	3	4	9	1	0	0	0	0	1	0	0	0	16448	835	29	4	305	4	TNNC2	20	44453140	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	397	44453140	18572380	17387	25538											
SNX21	90203	broad.mit.edu	37	chr20	44469390	44469390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacctgcagcggcaattccGgggcccaatggctgccatct	11	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44469390	T	T	44469390	3	4	9	1	0	0	0	0	1	0	0	0	15007	1116	39	1	589	1	SNX21	20	44469390	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	16250	44469390	18556130	17388	25539											
ZSWIM1	90204	broad.mit.edu	37	chr20	44511559	44511559	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggagggtcatcttgccCgagcagtctactttgccatc	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44511559	A	A	44511559	2	1	9	1	0	0	0	0	0	0	0	1	18369	644	23	1		1	ZSWIM1	20	44511559	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42169	44511559	18513961	17389	25540											
ZNF335	63925	broad.mit.edu	37	chr20	44578999	44578999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtggaacttgaggtgccCgttacggttgaaactgaggg	16	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44578999	A	A	44578999	3	1	9	1	0	0	0	0	1	0	0	0	17978	652	23	1	710	1	ZNF335	20	44578999	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	67440	44578999	18446521	17390	25541											
ZNF335	63925	broad.mit.edu	37	chr20	44590801	44590801	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgtagggcttgctgccCacgtggttgaacatgtgctc	12	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44590801	A	A	44590801	2	1	9	1	0	0	0	0	0	0	0	1	17978	581	21	2		2	ZNF335	20	44590801	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	11802	44590801	18434719	17391	25542											
MMP9	4318	broad.mit.edu	37	chr20	44640230	44640230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggactctacacccaggacGgcaatgctgatgggaaaccc	11	13	1	1	rs35573488		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44640230	T	T	44640230	3	4	9	1	0	0	0	0	1	0	0	0	9763	1116	39	1	863	1	MMP9	20	44640230	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	49429	44640230	18385290	17392	25543											
MMP9	4318	broad.mit.edu	37	chr20	44640854	44640854	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcctgggtaaggagtactCgacctgtaccagcgagggcc	13	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44640854	A	A	44640854	4	1	9	1	0	0	0	0	0	1	0	0	9763	893	31	3	1102	3	MMP9	20	44640854	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	624	44640854	18384666	17393	25544											
MMP9	4318	broad.mit.edu	37	chr20	44641879	44641879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataggaagagtctcacccCgtgtctctttttaggtcctc	9	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44641879	A	A	44641879	1	1	9	0	1	0	0	0	0	0	0	0	9763	667	23	1		1	MMP9	20	44641879	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1025	44641879	18383641	17394	25545											
SLC12A5	57468	broad.mit.edu	37	chr20	44671919	44671919	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcagtgatatgacctcCtacttcaccctgctggttgg	9	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44671919	A	A	44671919	2	1	9	1	0	0	0	0	0	0	0	1	14499	668	24	2		2	SLC12A5	20	44671919	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30040	44671919	18353601	17395	25546											
SLC12A5	57468	broad.mit.edu	37	chr20	44685877	44685877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatcgtgaagaaatcccGggacgccaagcttgttttgc	12	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44685877	T	T	44685877	3	4	9	1	0	0	0	0	1	0	0	0	14499	1116	39	1	3417	1	SLC12A5	20	44685877	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13958	44685877	18339643	17396	25547											
SLC12A5	57468	broad.mit.edu	37	chr20	44685918	44685918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacatgcctgggcctcccCgcaaccgcaatggtgatgaa	10	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44685918	A	A	44685918	3	1	9	1	0	0	0	0	1	0	0	0	14499	652	23	1	3458	1	SLC12A5	20	44685918	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	41	44685918	18339602	17397	25548											
NCOA5	57727	broad.mit.edu	37	chr20	44693673	44693673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgactctgtaccttgcGgggttccaaacatgatgttg	10	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44693673	T	T	44693673	3	4	9	1	0	0	0	0	1	0	0	0	10327	1116	39	1	927	1	NCOA5	20	44693673	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7755	44693673	18331847	17398	25549											
NCOA5	57727	broad.mit.edu	37	chr20	44699005	44699005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctgtctctgtgatccCgcaaatctctactatgtctg	7	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44699005	A	A	44699005	3	1	9	1	0	0	0	0	1	0	0	0	10327	652	23	1	1554	1	NCOA5	20	44699005	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5332	44699005	18326515	17399	25550											
NCOA5	57727	broad.mit.edu	37	chr20	44699042	44699042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtggtcccgcaagtctcGggggtctcgaatgtctctgc	13	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44699042	T	T	44699042	2	4	9	1	0	0	0	0	0	0	0	1	10327	1124	39	1		1	NCOA5	20	44699042	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	37	44699042	18326478	17400	25551											
CDH22	64405	broad.mit.edu	37	chr20	44815565	44815565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcggatccttagggatgccCgggatagctgtgcatgattg	14	8	0	1	rs147275945		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44815565	A	A	44815565	3	1	9	1	0	0	0	0	1	0	0	0	3137	652	23	1	1057	1	CDH22	20	44815565	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	116523	44815565	18209955	17401	25552											
ELMO2	63916	broad.mit.edu	37	chr20	45000454	45000454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaacttacacaattggcGgggactggaagtcatcctga	12	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45000454	T	T	45000454	3	4	9	1	0	0	0	0	1	0	0	0	5108	1116	39	1	615	1	ELMO2	20	45000454	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	184889	45000454	18025066	17402	25553											
ELMO2	63916	broad.mit.edu	37	chr20	45002262	45002262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactttgcaccaaagtccCgaggaacaaaagcagcctaa	8	11	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45002262	A	A	45002262	1	1	9	0	1	0	0	0	0	0	0	0	5108	667	23	1		1	ELMO2	20	45002262	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1808	45002262	18023258	17403	25554											
ELMO2	63916	broad.mit.edu	37	chr20	45017855	45017855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcagctggcgtgcagccCgggactaggaggccagggac	16	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45017855	A	A	45017855	3	1	9	1	0	0	0	0	1	0	0	0	5108	652	23	1	1978	1	ELMO2	20	45017855	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15593	45017855	18007665	17404	25555											
SLC13A3	64849	broad.mit.edu	37	chr20	45194970	45194970	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcagcacagccagggcGgggggcacattctccagggg	17	11	1	1	rs149123701	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45194970	T	T	45194970	2	4	9	1	0	0	0	0	0	0	0	1	14506	1103	39	1		1	SLC13A3	20	45194970	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	177115	45194970	17830550	17405	25556											
SLC13A3	64849	broad.mit.edu	37	chr20	45224840	45224840	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggttaggggctgtgcccgtGagtgtggctgtgcccccaat	16	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45224840	T	T	45224840	2	4	9	1	0	0	0	0	0	0	0	1	14506	1277	45	3		3	SLC13A3	20	45224840	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29870	45224840	17800680	17406	25557											
SLC13A3	64849	broad.mit.edu	37	chr20	45224968	45224968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggaacctctgtctcccCagggtggtctttgctttaaa	10	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45224968	A	A	45224968	3	1	9	1	0	0	0	0	1	0	0	0	14506	594	21	2	1222	2	SLC13A3	20	45224968	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	128	45224968	17800552	17407	25558											
SLC13A3	64849	broad.mit.edu	37	chr20	45228667	45228667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgtaggccgtttctcCgcacagcagctaggaggaaa	13	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45228667	A	A	45228667	3	1	9	1	0	0	0	0	1	0	0	0	14506	652	23	1	1297	1	SLC13A3	20	45228667	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3699	45228667	17796853	17408	25559											
TP53RK	112858	broad.mit.edu	37	chr20	45315601	45315601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaaatgaaactcagccCaaagtctatgagcacaatgt	8	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45315601	A	A	45315601	3	1	9	1	0	0	0	0	1	0	0	0	16514	594	21	2	212	2	TP53RK	20	45315601	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86934	45315601	17709919	17409	25560											
EYA2	2139	broad.mit.edu	37	chr20	45717992	45717992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctaagaggagcagtgaccCgtccccggcaggggacaatg	15	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45717992	A	A	45717992	3	1	9	1	0	0	0	0	1	0	0	0	5372	652	23	1	802	1	EYA2	20	45717992	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	402391	45717992	17307528	17410	25561											
EYA2	2139	broad.mit.edu	37	chr20	45725780	45725780	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttcactccttactcacGgggacatttgcatccagata	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45725780	T	T	45725780	2	4	9	1	0	0	0	0	0	0	0	1	5372	1103	39	1		1	EYA2	20	45725780	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7788	45725780	17299740	17411	25562											
ZMYND8	23613	broad.mit.edu	37	chr20	45875139	45875139	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctctgtgtcttctggctCgttcttagacttctgctcat	8	12	6	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45875139	A	A	45875139	4	1	9	1	0	0	0	0	0	1	0	0	17837	893	31	3	1709	3	ZMYND8	20	45875139	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149359	45875139	17150381	17412	25563											
ZMYND8	23613	broad.mit.edu	37	chr20	45875245	45875245	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggccgtatagacatcttcCgagatttcatttatgcctaa	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45875245	A	A	45875245	2	1	9	1	0	0	0	0	0	0	0	1	17837	639	23	1		1	ZMYND8	20	45875245	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	106	45875245	17150275	17413	25564											
ZMYND8	23613	broad.mit.edu	37	chr20	45905374	45905374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactggctgttgggtgtgtaGggtgtcctaaatggagagta	16	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45905374	T	T	45905374	2	4	9	1	0	0	0	0	0	0	0	1	17837	987	35	2		2	ZMYND8	20	45905374	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30129	45905374	17120146	17414	25565											
ZMYND8	23613	broad.mit.edu	37	chr20	45927543	45927543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacttagcgtgataaaccCggggacagagctcacagcaa	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45927543	A	A	45927543	3	1	9	1	0	0	0	0	1	0	0	0	17837	652	23	1	3263	1	ZMYND8	20	45927543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22169	45927543	17097977	17415	25566											
NCOA3	8202	broad.mit.edu	37	chr20	46265153	46265153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctacatccaatatgcatGggtcactgttacaagagaag	8	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46265153	T	T	46265153	3	4	9	1	0	0	0	0	1	0	0	0	10325	1348	47	2	2091	2	NCOA3	20	46265153	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	337610	46265153	16760367	17416	25567											
NCOA3	8202	broad.mit.edu	37	chr20	46266487	46266487	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcaaatggtagtcatctGgggactaagcaacaggtgtt	11	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46266487	T	T	46266487	2	4	9	1	0	0	0	0	0	0	0	1	10325	1335	47	2		2	NCOA3	20	46266487	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1334	46266487	16759033	17417	25568											
NCOA3	8202	broad.mit.edu	37	chr20	46279919	46279919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaacccaggccttcagccCacctcctaatgtgactgctt	7	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46279919	A	A	46279919	3	1	9	1	0	0	0	0	1	0	0	0	10325	594	21	2	3945	2	NCOA3	20	46279919	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13432	46279919	16745601	17418	25569											
NCOA3	8202	broad.mit.edu	37	chr20	46281255	46281255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcccatgatgcaacaccCgcaggctgcatccatctatc	7	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46281255	A	A	46281255	3	1	9	1	0	0	0	0	1	0	0	0	10325	652	23	1	4156	1	NCOA3	20	46281255	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1336	46281255	16744265	17419	25570											
SULF2	55959	broad.mit.edu	37	chr20	46288258	46288258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaagaaagaaaaagtcccCaaagaactatacaaagaagg	7	8	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46288258	A	A	46288258	1	1	9	0	1	0	0	0	0	0	0	0	15489	609	21	2		2	SULF2	20	46288258	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	7003	46288258	16737262	17420	25571											
SULF2	55959	broad.mit.edu	37	chr20	46294587	46294587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagagcatgctcctctccCgctctccactcacctcgtgg	8	19	3	1	rs140109308	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46294587	A	A	46294587	1	1	9	0	1	0	0	0	0	0	0	0	15489	667	23	1		1	SULF2	20	46294587	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	6329	46294587	16730933	17421	25572											
PREX1	57580	broad.mit.edu	37	chr20	47292763	47292763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtccaccagcttgctccCgggaagcactgacttgtagg	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47292763	A	A	47292763	3	1	9	1	0	0	0	0	1	0	0	0	12582	652	23	1	3454	1	PREX1	20	47292763	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	998176	47292763	15732757	17422	25573											
PREX1	57580	broad.mit.edu	37	chr20	47317359	47317359	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctttcctggatgttgccCgcagagatctttaacaaagt	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47317359	A	A	47317359	2	1	9	1	0	0	0	0	0	0	0	1	12582	639	23	1		1	PREX1	20	47317359	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24596	47317359	15708161	17423	25574											
PREX1	57580	broad.mit.edu	37	chr20	47324918	47324918	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggcactctggaccgcGgggtggtctgggtgcttgcc	18	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47324918	T	T	47324918	2	4	9	1	0	0	0	0	0	0	0	1	12582	1103	39	1		1	PREX1	20	47324918	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	7559	47324918	15700602	17424	25575											
PREX1	57580	broad.mit.edu	37	chr20	47361608	47361608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctgagactgcggctccGggtgtaaacaatactccaag	11	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47361608	T	T	47361608	3	4	9	1	0	0	0	0	1	0	0	0	12582	1116	39	1	4763	1	PREX1	20	47361608	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36690	47361608	15663912	17425	25576											
ARFGEF2	10564	broad.mit.edu	37	chr20	47626696	47626696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttaagtgctgcttctaaGggatgagctatgttcatttc	10	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47626696	T	T	47626696	1	4	9	0	1	0	0	0	0	0	0	0	855	1015	35	2		2	ARFGEF2	20	47626696	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	265088	47626696	15398824	17426	25577											
CSE1L	1434	broad.mit.edu	37	chr20	47706138	47706138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacacaaaaatgacatccCgtcttcctatatggccttat	4	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47706138	A	A	47706138	3	1	9	1	0	0	0	0	1	0	0	0	3964	652	23	1	2106	1	CSE1L	20	47706138	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79442	47706138	15319382	17427	25578											
STAU1	6780	broad.mit.edu	37	chr20	47740993	47740993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtaacttcttcagctcCtcaagaacagctatggcggc	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47740993	A	A	47740993	3	1	9	1	0	0	0	0	1	0	0	0	15390	680	24	2	1024	2	STAU1	20	47740993	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	34855	47740993	15284527	17428	25579											
STAU1	6780	broad.mit.edu	37	chr20	47741178	47741178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacacttattaaaagctcCaaggcacactggctggcaca	8	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47741178	A	A	47741178	1	1	9	0	1	0	0	0	0	0	0	0	15390	609	21	2		2	STAU1	20	47741178	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	185	47741178	15284342	17429	25580											
DDX27	55661	broad.mit.edu	37	chr20	47839938	47839938	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcctcggagactgactactCatcagctgatgagaacatcc	9	12	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47839938	A	A	47839938	4	1	9	1	0	0	0	0	0	1	0	0	4387	838	29	3	541	3	DDX27	20	47839938	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	98760	47839938	15185582	17430	25581											
DDX27	55661	broad.mit.edu	37	chr20	47841722	47841722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggacatgaacctttccCgccctcttctgaaggtagca	8	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47841722	A	A	47841722	3	1	9	1	0	0	0	0	1	0	0	0	4387	652	23	1	701	1	DDX27	20	47841722	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1784	47841722	15183798	17431	25582											
DDX27	55661	broad.mit.edu	37	chr20	47845305	47845305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtctgatttataaacccCgccaggctccagtcacccgc	8	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47845305	A	A	47845305	3	1	9	1	0	0	0	0	1	0	0	0	4387	652	23	1	883	1	DDX27	20	47845305	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3583	47845305	15180215	17432	25583											
DDX27	55661	broad.mit.edu	37	chr20	47852739	47852739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccactgatgtggcagccCgtggacttgacattgagggg	16	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47852739	A	A	47852739	3	1	9	1	0	0	0	0	1	0	0	0	4387	652	23	1	1623	1	DDX27	20	47852739	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7434	47852739	15172781	17433	25584											
DDX27	55661	broad.mit.edu	37	chr20	47858707	47858707	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgcagagccaagcgggccCgagcaatgcccgaggaggag	16	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47858707	A	A	47858707	2	1	9	1	0	0	0	0	0	0	0	1	4387	644	23	1		1	DDX27	20	47858707	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5968	47858707	15166813	17434	25585											
ZNFX1	57169	broad.mit.edu	37	chr20	47881302	47881302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggttgcggcggaattccCgcttgttcctcagctccctt	12	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47881302	A	A	47881302	3	1	9	1	0	0	0	0	1	0	0	0	18334	652	23	1	3694	1	ZNFX1	20	47881302	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22595	47881302	15144218	17435	25586											
ZNFX1	57169	broad.mit.edu	37	chr20	47888119	47888119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcctccttccttgatgtGggttcctgcccatggcccta	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47888119	T	T	47888119	3	4	9	1	0	0	0	0	1	0	0	0	18334	1348	47	2	5574	2	ZNFX1	20	47888119	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6817	47888119	15137401	17436	25587											
KCNB1	3745	broad.mit.edu	37	chr20	47989733	47989733	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttctccgatcttgtcccCgtgctgaacttcggactggt	9	12	2	1	rs112132596	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47989733	A	A	47989733	2	1	9	1	0	0	0	0	0	0	0	1	8082	639	23	1		1	KCNB1	20	47989733	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	101614	47989733	15035787	17437	25588											
KCNB1	3745	broad.mit.edu	37	chr20	47989746	47989746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccccgtgctgaacttcGgactggtgctcccagggagg	14	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47989746	T	T	47989746	3	4	9	1	0	0	0	0	1	0	0	0	8082	1116	39	1	229	1	KCNB1	20	47989746	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13	47989746	15035774	17438	25589											
KCNB1	3745	broad.mit.edu	37	chr20	47990468	47990468	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactccttggtattgaggatGggttgggattgggtcttggc	17	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47990468	T	T	47990468	2	4	9	1	0	0	0	0	0	0	0	1	8082	1335	47	2		2	KCNB1	20	47990468	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	722	47990468	15035052	17439	25590											
KCNB1	3745	broad.mit.edu	37	chr20	47990563	47990563	+	Missense_Mutation	SNP	G	T	T													agacgatctggctttttcagGggatccctgttccttggttt							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47990563	T	T	47990563	3	4	9	1	0	0	0	0	1	0	0	0	8082	1232	43	2	1046	2	KCNB1	20	47990563	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	95	47990563	15034957	17440	25591	168	2									
KCNB1	3745	broad.mit.edu	37	chr20	47990570	47990570	+	Missense_Mutation	SNP	C	A	A													ctggctttttcaggggatccCtgttccttggtttcaaagga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47990570	A	A	47990570	3	1	9	1	0	0	0	0	1	0	0	0	8082	680	24	2	1053	2	KCNB1	20	47990570	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	7	47990570	15034950	17441	25592	168	2									
KCNB1	3745	broad.mit.edu	37	chr20	48098545	48098545	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcgaactcctcgccttccCgctcccgtagggtctcggcc	9	18	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48098545	A	A	48098545	3	1	9	1	0	0	0	0	1	0	0	0	8082	652	23	1	2111	1	KCNB1	20	48098545	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	107975	48098545	14926975	17442	25593											
PTGIS	5740	broad.mit.edu	37	chr20	48164311	48164311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaaccaagaataacttGggccacatgagtagaaatga	10	6	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48164311	T	T	48164311	1	4	9	0	1	0	0	0	0	0	0	0	12858	1363	47	2		2	PTGIS	20	48164311	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65766	48164311	14861209	17443	25594											
PTGIS	5740	broad.mit.edu	37	chr20	48166582	48166582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcatccccatccctccCgaggcacaagaggcacttac	7	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48166582	A	A	48166582	1	1	9	0	1	0	0	0	0	0	0	0	12858	667	23	1		1	PTGIS	20	48166582	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2271	48166582	14858938	17444	25595											
B4GALT5	9334	broad.mit.edu	37	chr20	48252818	48252818	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggactgctttcttggtggcGgtgggtaaagcaaacgtaca	14	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48252818	T	T	48252818	1	4	9	0	1	0	0	0	0	0	0	0	1279	1131	39	1		1	B4GALT5	20	48252818	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	86236	48252818	14772702	17445	25596											
B4GALT5	9334	broad.mit.edu	37	chr20	48252857	48252857	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattctctcctctcagtactCgttcacctgagccagctcgg	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48252857	A	A	48252857	4	1	9	1	0	0	0	0	0	1	0	0	1279	893	31	3	11	3	B4GALT5	20	48252857	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39	48252857	14772663	17446	25597											
B4GALT5	9334	broad.mit.edu	37	chr20	48256245	48256245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgtcatcttctccacccCaaccccagaaagcattagga	7	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48256245	A	A	48256245	3	1	9	1	0	0	0	0	1	0	0	0	1279	595	21	2	291	2	B4GALT5	20	48256245	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3388	48256245	14769275	17447	25598											
SLC9A8	23315	broad.mit.edu	37	chr20	48446828	48446828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctaacttgctaaaaatGggtcacacagtgactgtctg	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48446828	T	T	48446828	1	4	9	0	1	0	0	0	0	0	0	0	14834	1363	47	2		2	SLC9A8	20	48446828	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	190583	48446828	14578692	17448	25599											
SLC9A8	23315	broad.mit.edu	37	chr20	48472053	48472053	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcacttcatgtggacccCgtgctcaacatgctggtctt	9	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48472053	A	A	48472053	2	1	9	1	0	0	0	0	0	0	0	1	14834	639	23	1		1	SLC9A8	20	48472053	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	25225	48472053	14553467	17449	25600											
SLC9A8	23315	broad.mit.edu	37	chr20	48497543	48497543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggatcataaaatcacacCgaagatgatgttcatcatgt	8	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48497543	A	A	48497543	3	1	9	1	0	0	0	0	1	0	0	0	14834	652	23	1	1291	1	SLC9A8	20	48497543	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	25490	48497543	14527977	17450	25601											
SPATA2	9825	broad.mit.edu	37	chr20	48524780	48524780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggcgccgtgcagagccCgcaggctagaggagctgagc	17	11	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48524780	A	A	48524780	3	1	9	1	0	0	0	0	1	0	0	0	15121	652	23	1	1322	1	SPATA2	20	48524780	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	27237	48524780	14500740	17451	25602											
SNAI1	6615	broad.mit.edu	37	chr20	48604411	48604411	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggcgttctctccccaggcGagaagcccttctcctgtccc	9	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48604411	T	T	48604411	4	4	9	1	0	0	0	0	0	1	0	0	14940	1059	37	3	623	3	SNAI1	20	48604411	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	79631	48604411	14421109	17452	25603											
TMEM189-UBE2V1	387522	broad.mit.edu	37	chr20	48699329	48699329	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgtaacactgtccttcGggcggctgagggagtttcat	13	9	1	1	rs73598393		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48699329	T	T	48699329	2	4	9	1	0	0	0	0	0	0	0	1	16235	1103	39	1		1	TMEM189-UBE2V1	20	48699329	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	94918	48699329	14326191	17453	25604											
TMEM189-UBE2V1	387522	broad.mit.edu	37	chr20	48700809	48700809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctggaaaaaaagagtacGgagatgtcacgcaattacaa	10	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48700809	T	T	48700809	1	4	9	0	1	0	0	0	0	0	0	0	16235	1131	39	1		1	TMEM189-UBE2V1	20	48700809	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1480	48700809	14324711	17454	25605											
TMEM189-UBE2V1	387522	broad.mit.edu	37	chr20	48760075	48760075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtgtgtcctcccagcGggccagcagcaggagatgga	18	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48760075	T	T	48760075	3	4	9	1	0	0	0	0	1	0	0	0	16235	1116	39	1	935	1	TMEM189-UBE2V1	20	48760075	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	59266	48760075	14265445	17455	25606											
PTPN1	5770	broad.mit.edu	37	chr20	49194960	49194960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttttctctttcagaccCaagaaactcgagagatctta	6	9	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49194960	A	A	49194960	3	1	9	1	0	0	0	0	1	0	0	0	12885	595	21	2	518	2	PTPN1	20	49194960	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	434885	49194960	13830560	17456	25607											
PTPN1	5770	broad.mit.edu	37	chr20	49195731	49195731	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggaaagacccttcttcCgttgatatcaagaaagtgct	9	8	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49195731	A	A	49195731	2	1	9	1	0	0	0	0	0	0	0	1	12885	639	23	1		1	PTPN1	20	49195731	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	771	49195731	13829789	17457	25608											
BCAS4	55653	broad.mit.edu	37	chr20	49457139	49457139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtacagtgcatattgacGgcacacgcctcattacgatt	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49457139	T	T	49457139	1	4	9	0	1	0	0	0	0	0	0	0	1358	1131	39	1		1	BCAS4	20	49457139	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	261408	49457139	13568381	17458	25609											
ADNP	23394	broad.mit.edu	37	chr20	49508349	49508349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctcagatggagaagcacCgtctttccactcaacaacat	6	13	3	2	rs6096164		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49508349	A	A	49508349	3	1	9	1	0	0	0	0	1	0	0	0	323	652	23	1	410	1	ADNP	20	49508349	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51210	49508349	13517171	17459	25610											
ADNP	23394	broad.mit.edu	37	chr20	49530271	49530271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggaaagcaaaacagacGggtgtgtgtctaaacttatg	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49530271	T	T	49530271	1	4	9	0	1	0	0	0	0	0	0	0	323	1131	39	1		1	ADNP	20	49530271	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21922	49530271	13495249	17460	25611											
NFATC2	4773	broad.mit.edu	37	chr20	50049277	50049277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatattcatccgtgggctcCgtcttgatggctgggactgg	13	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50049277	A	A	50049277	2	1	9	1	0	0	0	0	0	0	0	1	10457	639	23	1		1	NFATC2	20	50049277	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	519006	50049277	12976243	17461	25612											
NFATC2	4773	broad.mit.edu	37	chr20	50051820	50051820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcggatatgcttgttcCgatattcagggatctcaaca	11	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50051820	A	A	50051820	3	1	9	1	0	0	0	0	1	0	0	0	10457	652	23	1	900	1	NFATC2	20	50051820	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2543	50051820	12973700	17462	25613											
NFATC2	4773	broad.mit.edu	37	chr20	50071208	50071208	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctttcaaccatgggcagctCgtgagcagatcgctgggctg	13	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50071208	A	A	50071208	4	1	9	1	0	0	0	0	0	1	0	0	10457	893	31	3	1119	3	NFATC2	20	50071208	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19388	50071208	12954312	17463	25614											
NFATC2	4773	broad.mit.edu	37	chr20	50092015	50092015	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgccctcatgttgtttttGggctccaagggtatctccag	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50092015	T	T	50092015	2	4	9	1	0	0	0	0	0	0	0	1	10457	1335	47	2		2	NFATC2	20	50092015	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	20807	50092015	12933505	17464	25615											
ATP9A	10079	broad.mit.edu	37	chr20	50244099	50244099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgactgggaggcaggtGgggctgcaaaggcaatggaa	20	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50244099	T	T	50244099	1	4	9	0	1	0	0	0	0	0	0	0	1202	1363	47	2		2	ATP9A	20	50244099	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	152084	50244099	12781421	17465	25616											
ATP9A	10079	broad.mit.edu	37	chr20	50244194	50244194	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgccaccacgagcaccCgcagcccttctcgggccatg	9	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50244194	A	A	50244194	3	1	9	1	0	0	0	0	1	0	0	0	1202	652	23	1	1401	1	ATP9A	20	50244194	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95	50244194	12781326	17466	25617											
ATP9A	10079	broad.mit.edu	37	chr20	50273570	50273570	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccgttggactcatacacGggagtcacgttgtggcagag	13	10	2	1	rs150632110		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50273570	T	T	50273570	2	4	9	1	0	0	0	0	0	0	0	1	1202	1103	39	1		1	ATP9A	20	50273570	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29376	50273570	12751950	17467	25618											
ATP9A	10079	broad.mit.edu	37	chr20	50305654	50305654	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttctctatgctcaggctctCgctgatcggggggtcgctgt	14	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50305654	A	A	50305654	4	1	9	1	0	0	0	0	0	1	0	0	1202	893	31	3	2475	3	ATP9A	20	50305654	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32084	50305654	12719866	17468	25619											
ATP9A	10079	broad.mit.edu	37	chr20	50342400	50342400	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaccaagtctcatttcGggaacaaactgagagcaggc	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50342400	T	T	50342400	2	4	9	1	0	0	0	0	0	0	0	1	1202	1103	39	1		1	ATP9A	20	50342400	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36746	50342400	12683120	17469	25620											
SALL4	57167	broad.mit.edu	37	chr20	50401184	50401184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaacttccttccacggcGggctgagttattgttcgccc	11	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50401184	T	T	50401184	3	4	9	1	0	0	0	0	1	0	0	0	13924	1116	39	1	383	1	SALL4	20	50401184	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58784	50401184	12624336	17470	25621											
SALL4	57167	broad.mit.edu	37	chr20	50401205	50401205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgagttattgttcgcccCgtgtgtcatgtagtgaacct	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50401205	A	A	50401205	3	1	9	1	0	0	0	0	1	0	0	0	13924	652	23	1	404	1	SALL4	20	50401205	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21	50401205	12624315	17471	25622											
SALL4	57167	broad.mit.edu	37	chr20	50407327	50407327	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaatgagacattcgttGggatcagtggtggccttgtc	14	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50407327	T	T	50407327	2	4	9	1	0	0	0	0	0	0	0	1	13924	1335	47	2		2	SALL4	20	50407327	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	6122	50407327	12618193	17472	25623											
SALL4	57167	broad.mit.edu	37	chr20	50408462	50408462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgccaccttggtgcccCgtagtgcctgcaaggtcaca	10	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50408462	A	A	50408462	3	1	9	1	0	0	0	0	1	0	0	0	13924	652	23	1	2613	1	SALL4	20	50408462	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1135	50408462	12617058	17473	25624											
SALL4	57167	broad.mit.edu	37	chr20	50408575	50408575	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaggtacaccacagactcCgcatccggcttctccttcat	6	15	2	1	rs147838161		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50408575	A	A	50408575	2	1	9	1	0	0	0	0	0	0	0	1	13924	639	23	1		1	SALL4	20	50408575	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113	50408575	12616945	17474	25625											
SALL4	57167	broad.mit.edu	37	chr20	50408641	50408641	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgacagtccttactgccGggactggtgggctggtggct	16	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50408641	T	T	50408641	2	4	9	1	0	0	0	0	0	0	0	1	13924	1103	39	1		1	SALL4	20	50408641	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	66	50408641	12616879	17475	25626											
ZFP64	55734	broad.mit.edu	37	chr20	50713902	50713902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagctgttgaacagaatGgatacctacccgtgtggatt	11	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50713902	T	T	50713902	1	4	9	0	1	0	0	0	0	0	0	0	17778	1363	47	2		2	ZFP64	20	50713902	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	305261	50713902	12311618	17476	25627											
ZFP64	55734	broad.mit.edu	37	chr20	50776545	50776545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaactgcaaacaacGggatgagcaaaggttccaac	8	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50776545	T	T	50776545	1	4	9	0	1	0	0	0	0	0	0	0	17778	1131	39	1		1	ZFP64	20	50776545	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	62643	50776545	12248975	17477	25628											
TSHZ2	128553	broad.mit.edu	37	chr20	51870469	51870469	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggaggaactgtgacaccCgaaacggcagcaacaagagt	13	9	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51870469	A	A	51870469	2	1	9	1	0	0	0	0	0	0	0	1	16749	644	23	1		1	TSHZ2	20	51870469	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1093924	51870469	11155051	17478	25629											
TSHZ2	128553	broad.mit.edu	37	chr20	51871244	51871244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctctgcctccaagaaagGgaagcagctggtattagacc	11	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51871244	T	T	51871244	3	4	9	1	0	0	0	0	1	0	0	0	16749	1232	43	2	1253	2	TSHZ2	20	51871244	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	775	51871244	11154276	17479	25630											
TSHZ2	128553	broad.mit.edu	37	chr20	51872086	51872086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcatcaacccactcagcGccctgcagtccgtcctgaac	7	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51872086	A	A	51872086	3	1	9	1	0	0	0	0	1	0	0	0	16749	1087	38	4	2095	4	TSHZ2	20	51872086	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	842	51872086	11153434	17480	25631											
ZNF217	7764	broad.mit.edu	37	chr20	52193210	52193210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttactcaaagaaattgccGggcaattgtgaagagccccc	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52193210	T	T	52193210	3	4	9	1	0	0	0	0	1	0	0	0	17898	1116	39	1	1061	1	ZNF217	20	52193210	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	321124	52193210	10832310	17481	25632											
ZNF217	7764	broad.mit.edu	37	chr20	52193299	52193299	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagtcagctgcggtctcCgtttgcttctctttggggct	12	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52193299	A	A	52193299	2	1	9	1	0	0	0	0	0	0	0	1	17898	639	23	1		1	ZNF217	20	52193299	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	89	52193299	10832221	17482	25633											
ZNF217	7764	broad.mit.edu	37	chr20	52198529	52198529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgacaggcttcttcccCgtttcagggtgagattttgg	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52198529	A	A	52198529	2	1	9	1	0	0	0	0	0	0	0	1	17898	639	23	1		1	ZNF217	20	52198529	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5230	52198529	10826991	17483	25634											
ZNF217	7764	broad.mit.edu	37	chr20	52198663	52198663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttggtgtgcaccttgcGgtgctcaattagactttctt	9	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52198663	T	T	52198663	3	4	9	1	0	0	0	0	1	0	0	0	17898	1116	39	1	2459	1	ZNF217	20	52198663	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	134	52198663	10826857	17484	25635											
BCAS1	8537	broad.mit.edu	37	chr20	52675255	52675255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacactcatttggttaccCattgctcctataatggagag	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52675255	A	A	52675255	3	1	9	1	0	0	0	0	1	0	0	0	1355	594	21	2	1795	2	BCAS1	20	52675255	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	476592	52675255	10350265	17485	25636											
MC3R	4159	broad.mit.edu	37	chr20	54823953	54823953	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacactgcctaatggctcGgagcacctccaagccccttt	7	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54823953	T	T	54823953	2	4	9	1	0	0	0	0	0	0	0	1	9458	1103	39	1		1	MC3R	20	54823953	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2148698	54823953	8201567	17486	25637											
C20orf108	116151	broad.mit.edu	37	chr20	54940292	54940292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatctcattaatttccttGggcatattttacatggttgt	8	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54940292	T	T	54940292	3	4	9	1	0	0	0	0	1	0	0	0	2100	1339	47	2	342	2	C20orf108	20	54940292	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	116339	54940292	8085228	17487	25638											
C20orf108	116151	broad.mit.edu	37	chr20	54941160	54941160	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgcaatcctgctgaaactCggatttaaagagtccctggt	9	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54941160	A	A	54941160	2	1	9	1	0	0	0	0	0	0	0	1	2100	871	31	3		3	C20orf108	20	54941160	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	868	54941160	8084360	17488	25639											
AURKA	6790	broad.mit.edu	37	chr20	54961495	54961495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttgaaggacacaagaccCgctgagcctggccactattt	9	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54961495	A	A	54961495	3	1	9	1	0	0	0	0	1	0	0	0	1226	652	23	1	1102	1	AURKA	20	54961495	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	20335	54961495	8064025	17489	25640											
AURKA	6790	broad.mit.edu	37	chr20	54961508	54961508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagacccgctgagcctggcCactatttacaggtaatggat	10	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54961508	A	A	54961508	3	1	9	1	0	0	0	0	1	0	0	0	1226	594	21	2	1115	2	AURKA	20	54961508	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	13	54961508	8064012	17490	25641											
CSTF1	1477	broad.mit.edu	37	chr20	54974178	54974178	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccgatgctatatgttcCgttaattacaattctagtgc	6	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54974178	A	A	54974178	2	1	9	1	0	0	0	0	0	0	0	1	4017	639	23	1		1	CSTF1	20	54974178	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12670	54974178	8051342	17491	25642											
C20orf106	200232	broad.mit.edu	37	chr20	55100931	55100931	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaagaaatgcttccccCaacaaagactgtgcattcaa	5	10	1	2	rs1054347		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55100931	A	A	55100931	2	1	9	1	0	0	0	0	0	0	0	1	2098	581	21	2		2	C20orf106	20	55100931	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	126753	55100931	7924589	17492	25643											
BMP7	655	broad.mit.edu	37	chr20	55803263	55803263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaactcagcacctctccCagatacccgtatagcaccca	6	16	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55803263	A	A	55803263	1	1	9	0	1	0	0	0	0	0	0	0	1471	609	21	2		2	BMP7	20	55803263	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	702332	55803263	7222257	17493	25644											
BMP7	655	broad.mit.edu	37	chr20	55803508	55803508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaacacacaccaacacCgacagctcattagtgtctgg	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55803508	A	A	55803508	1	1	9	0	1	0	0	0	0	0	0	0	1471	667	23	1		1	BMP7	20	55803508	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	245	55803508	7222012	17494	25645											
RAE1	8480	broad.mit.edu	37	chr20	55948535	55948535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattttaactgtagcatcGgtgtgtggctatttttaaag	9	4	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55948535	T	T	55948535	3	4	9	1	0	0	0	0	1	0	0	0	13106	1116	39	1	677	1	RAE1	20	55948535	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	145027	55948535	7076985	17495	25646											
RAE1	8480	broad.mit.edu	37	chr20	55949710	55949710	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggcacccttgcaactgtGggatctgatggtagattcag	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55949710	T	T	55949710	2	4	9	1	0	0	0	0	0	0	0	1	13106	1335	47	2		2	RAE1	20	55949710	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1175	55949710	7075810	17496	25647											
RBM38	55544	broad.mit.edu	37	chr20	55968424	55968424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcttggggtgggtagtcCgtggagatgaagtggagagg	21	4	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55968424	A	A	55968424	1	1	9	0	1	0	0	0	0	0	0	0	13240	667	23	1		1	RBM38	20	55968424	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18714	55968424	7057096	17497	25648											
CTCFL	140690	broad.mit.edu	37	chr20	56083667	56083667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagtaagcttacccagcGggaaaagcctttgccacact	8	12	0	0	rs61754540		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56083667	T	T	56083667	3	4	9	1	0	0	0	0	1	0	0	0	4035	1116	39	1	334	1	CTCFL	20	56083667	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	115243	56083667	6941853	17498	25649											
CTCFL	140690	broad.mit.edu	37	chr20	56089747	56089747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatgtattttcatggtccCgctctgggtgaagcgggtgt	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56089747	A	A	56089747	3	1	9	1	0	0	0	0	1	0	0	0	4035	652	23	1	780	1	CTCFL	20	56089747	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6080	56089747	6935773	17499	25650											
CTCFL	140690	broad.mit.edu	37	chr20	56089762	56089762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccgctctgggtgaagcGggtgtggcagatgtggcatt	18	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56089762	T	T	56089762	3	4	9	1	0	0	0	0	1	0	0	0	4035	1116	39	1	795	1	CTCFL	20	56089762	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	56089762	6935758	17500	25651											
CTCFL	140690	broad.mit.edu	37	chr20	56094479	56094479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgttagaggttcaaattcCatttaaatacttgaaagtaa	6	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56094479	A	A	56094479	1	1	9	0	1	0	0	0	0	0	0	0	4035	609	21	2		2	CTCFL	20	56094479	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	4717	56094479	6931041	17501	25652											
CTCFL	140690	broad.mit.edu	37	chr20	56099205	56099205	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctttttccggcatcaactcGagttctttgatcttggtgaa	8	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56099205	T	T	56099205	2	4	9	1	0	0	0	0	0	0	0	1	4035	1045	37	3		3	CTCFL	20	56099205	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4726	56099205	6926315	17502	25653											
CTCFL	140690	broad.mit.edu	37	chr20	56099237	56099237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgaattgctcagaaaGgacagagatctcagtggctg	13	7	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56099237	T	T	56099237	3	4	9	1	0	0	0	0	1	0	0	0	4035	1000	35	2	2006	2	CTCFL	20	56099237	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	32	56099237	6926283	17503	25654											
CTCFL	140690	broad.mit.edu	37	chr20	56099259	56099259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagatctcagtggctgcCataatgacttggcctgtttg	11	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56099259	A	A	56099259	3	1	9	1	0	0	0	0	1	0	0	0	4035	594	21	2	2028	2	CTCFL	20	56099259	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22	56099259	6926261	17504	25655											
PCK1	5105	broad.mit.edu	37	chr20	56138687	56138687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcatttcccagcgcctgcGggaagaccaacctggccatg	11	16	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138687	T	T	56138687	3	4	9	1	0	0	0	0	1	0	0	0	11675	1116	39	1	883	1	PCK1	20	56138687	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	39428	56138687	6886833	17505	25656											
ZBP1	81030	broad.mit.edu	37	chr20	56190570	56190570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgcaaaaacttacccCgttgttggctgaactgaggg	12	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56190570	A	A	56190570	3	1	9	1	0	0	0	0	1	0	0	0	17647	652	23	1	1064	1	ZBP1	20	56190570	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	51883	56190570	6834950	17506	25657											
STX16	8675	broad.mit.edu	37	chr20	57251389	57251389	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgcgcgtgtggatctccCgggtgtgaggggcttggcct	18	11	1	1	rs112492984		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57251389	A	A	57251389	1	1	9	0	1	0	0	0	0	0	0	0	15457	667	23	1		1	STX16	20	57251389	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1060819	57251389	5774131	17507	25658											
GNAS	2778	broad.mit.edu	37	chr20	57478860	57478860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcccgtaagctacacccCgacttgtgtggccttagccc	8	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57478860	A	A	57478860	1	1	9	0	1	0	0	0	0	0	0	0	6574	667	23	1		1	GNAS	20	57478860	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	227471	57478860	5546660	17508	25659											
TH1L	51497	broad.mit.edu	37	chr20	57564685	57564685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccttgaaaaaaatctccCtgagtttgccgtaagttctt	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57564685	A	A	57564685	3	1	9	1	0	0	0	0	1	0	0	0	15962	681	24	2	696	2	TH1L	20	57564685	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	85825	57564685	5460835	17509	25660											
TUBB1	81027	broad.mit.edu	37	chr20	57598639	57598639	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggagctctctttcaaccCgacagttttgtccatggtat	8	10	2	0	rs141810102		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57598639	A	A	57598639	2	1	9	1	0	0	0	0	0	0	0	1	16879	639	23	1		1	TUBB1	20	57598639	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	33954	57598639	5426881	17510	25661											
TUBB1	81027	broad.mit.edu	37	chr20	57599037	57599037	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggagccctacaacgcGgttctgtctatccaccagct	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57599037	T	T	57599037	2	4	9	1	0	0	0	0	0	0	0	1	16879	1103	39	1		1	TUBB1	20	57599037	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	398	57599037	5426483	17511	25662											
ZNF831	128611	broad.mit.edu	37	chr20	57766592	57766592	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgggtgagaggcccttccCgtgtgccacctgcggcatcg	14	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57766592	G	G	57766592	3	3	9	1	0	0	0	0	1	0	0	0	18314	652	23	4	520	4	ZNF831	20	57766592	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	167555	57766592	5258928	17512	25663											
ZNF831	128611	broad.mit.edu	37	chr20	57767923	57767923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggctgaagatgttctccCaggagaagtggcaggtgtac	15	7	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57767923	A	A	57767923	3	1	9	1	0	0	0	0	1	0	0	0	18314	595	21	2	1851	2	ZNF831	20	57767923	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1331	57767923	5257597	17513	25664											
EDN3	1908	broad.mit.edu	37	chr20	57876775	57876775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatttggatcaacactccCgagtaagtcagccttttgtg	8	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57876775	A	A	57876775	2	1	9	1	0	0	0	0	0	0	0	1	4958	639	23	1		1	EDN3	20	57876775	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	108852	57876775	5148745	17514	25665											
PHACTR3	116154	broad.mit.edu	37	chr20	58381176	58381176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaacaggaactagaagacCggaacattttccccagaagg	10	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58381176	A	A	58381176	2	1	9	1	0	0	0	0	0	0	0	1	11906	643	23	1		1	PHACTR3	20	58381176	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	504401	58381176	4644344	17515	25666											
SYCP2	10388	broad.mit.edu	37	chr20	58475155	58475155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacagtgatttgatcaatGgtagttttataagccagtat	8	4	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58475155	T	T	58475155	1	4	9	0	1	0	0	0	0	0	0	0	15551	1363	47	2		2	SYCP2	20	58475155	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	93979	58475155	4550365	17516	25667											
PPP1R3D	5509	broad.mit.edu	37	chr20	58514122	58514122	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagctctcttcgcactcccCgcgaggcatgtgcagcgcgt	11	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58514122	G	G	58514122	3	3	9	1	0	0	0	0	1	0	0	0	12475	652	23	4	38	4	PPP1R3D	20	58514122	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	38967	58514122	4511398	17517	25668											
CDH26	60437	broad.mit.edu	37	chr20	58571792	58571792	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactggtcatgtataatgcGgagagcaaaggcacttcagc	11	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58571792	T	T	58571792	2	4	9	1	0	0	0	0	0	0	0	1	3140	1103	39	1		1	CDH26	20	58571792	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	57670	58571792	4453728	17518	25669											
C20orf197	284756	broad.mit.edu	37	chr20	58645022	58645022	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctggaagaacccatcaGggttctgatggttgccctgt	12	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58645022	T	T	58645022	1	4	9	1	0	0	0	0	0	0	0	0	2124	1015	35	2		2	C20orf197	20	58645022	Translation_Start_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	73230	58645022	4380498	17519	25670											
LSM14B	149986	broad.mit.edu	37	chr20	60699814	60699814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagctcagcacacactccCgcaggatcccgccattgttc	8	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60699814	A	A	60699814	3	1	9	1	0	0	0	0	1	0	0	0	9142	652	23	1	275	1	LSM14B	20	60699814	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2054792	60699814	2325706	17520	25671											
OSBPL2	9885	broad.mit.edu	37	chr20	60835092	60835092	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaaatcagaaagtcacGggaatgattgacttagacac	11	7	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60835092	T	T	60835092	2	4	9	1	0	0	0	0	0	0	0	1	11372	1103	39	1		1	OSBPL2	20	60835092	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	135278	60835092	2190428	17521	25672											
LAMA5	3911	broad.mit.edu	37	chr20	60907803	60907803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagggtgacgggaggccCgccacccctcgcccttccca	13	18	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60907803	A	A	60907803	1	1	9	0	1	0	0	0	0	0	0	0	8681	667	23	1		1	LAMA5	20	60907803	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	72711	60907803	2117717	17522	25673											
CABLES2	81928	broad.mit.edu	37	chr20	60971414	60971414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatgttcttgatgaagtGggtcttcttcaggcctttat	9	9	5	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60971414	T	T	60971414	3	4	9	1	0	0	0	0	1	0	0	0	2556	1348	47	2	984	2	CABLES2	20	60971414	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63611	60971414	2054106	17523	25674											
C20orf166	128826	broad.mit.edu	37	chr20	61151481	61151481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaccggggcggcgtcccGgggtcttggaactgcatgca	15	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61151481	T	T	61151481	1	4	9	0	1	0	0	0	0	0	0	0	2117	1131	39	1		1	C20orf166	20	61151481	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	180067	61151481	1874039	17524	25675											
SLCO4A1	28231	broad.mit.edu	37	chr20	61297856	61297856	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccgttgtcagcctgctGggcatcctcgtcttctcact	9	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61297856	T	T	61297856	2	4	9	1	0	0	0	0	0	0	0	1	14843	1335	47	2		2	SLCO4A1	20	61297856	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	146375	61297856	1727664	17525	25676											
NTSR1	4923	broad.mit.edu	37	chr20	61386081	61386081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccccatggtggtcatctcGgtcctgaacaccatcatcgc	8	15	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61386081	T	T	61386081	2	4	9	1	0	0	0	0	0	0	0	1	10805	1103	39	1		1	NTSR1	20	61386081	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	88225	61386081	1639439	17526	25677											
COL9A3	1299	broad.mit.edu	37	chr20	61468482	61468482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggaagcctttggcacccGggtccattggtcggcccggt	14	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61468482	T	T	61468482	3	4	9	1	0	0	0	0	1	0	0	0	3741	1116	39	1	1769	1	COL9A3	20	61468482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82401	61468482	1557038	17527	25678											
DIDO1	11083	broad.mit.edu	37	chr20	61511039	61511039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgggccccacgtcaaacCgctctctctgcctcccttcg	7	19	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61511039	A	A	61511039	3	1	9	1	0	0	0	0	1	0	0	0	4562	652	23	1	457	1	DIDO1	20	61511039	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42557	61511039	1514481	17528	25679											
DIDO1	11083	broad.mit.edu	37	chr20	61537200	61537200	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggctatccagaaagaacGggaggggtccaggaggccaa	16	8	0	2	rs150069069		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61537200	T	T	61537200	1	4	9	0	1	0	0	0	0	0	0	0	4562	1116	39	1		1	DIDO1	20	61537200	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	26161	61537200	1488320	17529	25680											
SLC17A9	63910	broad.mit.edu	37	chr20	61594133	61594133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccgggcgggctagtccCgggcgcccacagctgcccag	16	17	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61594133	A	A	61594133	1	1	9	0	1	0	0	0	0	0	0	0	14537	667	23	1		1	SLC17A9	20	61594133	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	56933	61594133	1431387	17530	25681											
YTHDF1	54915	broad.mit.edu	37	chr20	61834500	61834500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtccatgttatgctttatGggtggagggggcagcccacc	14	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61834500	T	T	61834500	2	4	9	1	0	0	0	0	0	0	0	1	17625	1335	47	2		2	YTHDF1	20	61834500	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	240367	61834500	1191020	17531	25682											
YTHDF1	54915	broad.mit.edu	37	chr20	61834828	61834828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgccacccagggagctcGgggggtaggtgtagctgctc	17	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61834828	T	T	61834828	3	4	9	1	0	0	0	0	1	0	0	0	17625	1116	39	1	1223	1	YTHDF1	20	61834828	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	328	61834828	1190692	17532	25683											
YTHDF1	54915	broad.mit.edu	37	chr20	61835009	61835009	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcataaaatgatggtctcCgttactgagctgtccgtagg	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61835009	A	A	61835009	4	1	9	1	0	0	0	0	0	1	0	0	17625	661	23	1	1404	1	YTHDF1	20	61835009	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	181	61835009	1190511	17533	25684											
ARFGAP1	55738	broad.mit.edu	37	chr20	61915272	61915272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcatgccgcccgcatctcCgccgagaatgtgcttggctt	12	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61915272	A	A	61915272	1	1	9	0	1	0	0	0	0	0	0	0	851	667	23	1		1	ARFGAP1	20	61915272	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80263	61915272	1110248	17534	25685											
KCNQ2	3785	broad.mit.edu	37	chr20	62071037	62071037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgggggtacttgtcccCgtagccaatggtggtcagcg	16	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62071037	A	A	62071037	3	1	9	1	0	0	0	0	1	0	0	0	8153	652	23	1	1889	1	KCNQ2	20	62071037	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	155765	62071037	954483	17535	25686											
EEF1A2	1917	broad.mit.edu	37	chr20	62121863	62121863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagcagcctcctgcggcGggtcagacttgctgtcccca	12	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62121863	T	T	62121863	3	4	9	1	0	0	0	0	1	0	0	0	4964	1116	39	1	405	1	EEF1A2	20	62121863	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	50826	62121863	903657	17536	25687											
EEF1A2	1917	broad.mit.edu	37	chr20	62128920	62128920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccaagcctggccaccacGggagttgggggttccttctc	13	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62128920	T	T	62128920	1	4	9	0	1	0	0	0	0	0	0	0	4964	1131	39	1		1	EEF1A2	20	62128920	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7057	62128920	896600	17537	25688											
SRMS	6725	broad.mit.edu	37	chr20	62172237	62172237	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaaggagggccgttcctcGgggctgctcctccagcactc	14	15	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62172237	T	T	62172237	2	4	9	1	0	0	0	0	0	0	0	1	15270	1103	39	1		1	SRMS	20	62172237	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43317	62172237	853283	17538	25689											
SRMS	6725	broad.mit.edu	37	chr20	62178615	62178615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcggacactcagctcccCgccacaccgcgccgtgaagt	12	18	1	1	rs149894938		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62178615	A	A	62178615	3	1	9	1	0	0	0	0	1	0	0	0	15270	652	23	1	1296	1	SRMS	20	62178615	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	6378	62178615	846905	17539	25690											
ZNF512B	57473	broad.mit.edu	37	chr20	62595189	62595189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccccacgagagtcttccGggtgaccacgttgcaggtgg	14	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62595189	T	T	62595189	2	4	9	1	0	0	0	0	0	0	0	1	18084	1115	39	1		1	ZNF512B	20	62595189	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	416574	62595189	430331	17540	25691											
ZNF512B	57473	broad.mit.edu	37	chr20	62597697	62597697	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcacaagctttgttacCgtaatgggtttggtgacagg	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62597697	A	A	62597697	2	1	9	1	0	0	0	0	0	0	0	1	18084	639	23	1		1	ZNF512B	20	62597697	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2508	62597697	427823	17541	25692											
ZNF512B	57473	broad.mit.edu	37	chr20	62597721	62597721	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtttggtgacaggtacGggtttggtgaccggcacaga	17	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62597721	T	T	62597721	2	4	9	1	0	0	0	0	0	0	0	1	18084	1103	39	1		1	ZNF512B	20	62597721	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	24	62597721	427799	17542	25693											
ZNF512B	57473	broad.mit.edu	37	chr20	62597733	62597733	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtacgggtttggtgacCggcacagacttggtgactgt	15	8	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62597733	A	A	62597733	2	1	9	1	0	0	0	0	0	0	0	1	18084	639	23	1		1	ZNF512B	20	62597733	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12	62597733	427787	17543	25694											
ZNF512B	57473	broad.mit.edu	37	chr20	62597787	62597787	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accggcatggccttggtgacGggcatgggcctgctgactgt	16	11	0	2	rs142867495	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62597787	T	T	62597787	2	4	9	1	0	0	0	0	0	0	0	1	18084	1103	39	1		1	ZNF512B	20	62597787	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	54	62597787	427733	17544	25695											
PRPF6	24148	broad.mit.edu	37	chr20	62614581	62614581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgatgaggtgagatgtgtcCggctttcgtggctcctccag	14	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62614581	A	A	62614581	1	1	9	0	1	0	0	0	0	0	0	0	12680	667	23	1		1	PRPF6	20	62614581	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	16794	62614581	410939	17545	25696											
PRPF6	24148	broad.mit.edu	37	chr20	62659038	62659038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcagcttactcgagcacGggccattttggaaaagtctc	12	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62659038	T	T	62659038	3	4	9	1	0	0	0	0	1	0	0	0	12680	1116	39	1	2354	1	PRPF6	20	62659038	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44457	62659038	366482	17546	25697											
TCEA2	6919	broad.mit.edu	37	chr20	62701109	62701109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagctagtcagggctccCtcttgcagatgaccacgtgg	14	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62701109	A	A	62701109	1	1	9	0	1	0	0	0	0	0	0	0	15790	696	24	2		2	TCEA2	20	62701109	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	42071	62701109	324411	17547	25698											
TCEA2	6919	broad.mit.edu	37	chr20	62701657	62701657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacatgaagtataagaacCgtgtacggagtcgtatctcc	10	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62701657	A	A	62701657	3	1	9	1	0	0	0	0	1	0	0	0	15790	652	23	1	588	1	TCEA2	20	62701657	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	548	62701657	323863	17548	25699											
PCMTD2	55251	broad.mit.edu	37	chr20	62891391	62891391	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagaagcacagtatatcCggactgagctggtagagcag	13	7	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62891391	A	A	62891391	2	1	9	1	0	0	0	0	0	0	0	1	11681	643	23	1		1	PCMTD2	20	62891391	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	189734	62891391	134129	17549	25700											
PCMTD2	55251	broad.mit.edu	37	chr20	62891528	62891528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagccccgtgcatctactcGgaggtgatggaagccctaga	12	12	2	2	rs143062857		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62891528	T	T	62891528	2	4	9	1	0	0	0	0	0	0	0	1	11681	1103	39	1		1	PCMTD2	20	62891528	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	137	62891528	133992	17550	25701											
PCMTD2	55251	broad.mit.edu	37	chr20	62904820	62904820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagacttggaagaggaacGgagggaagaagaagagaaga	17	2	0	7			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62904820	T	T	62904820	3	4	9	1	0	0	0	0	1	0	0	0	11681	1116	39	1	971	1	PCMTD2	20	62904820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13292	62904820	120700	17551	25702											
TPTE	7179	broad.mit.edu	37	chr21	11020832	11020832	+	RNA	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttaatactgacacagtatGgatggtaacactgaccacac	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11020832	C	C	11020832	1	2	9	0	1	0	0	0	0	0	0	0	16554	1363	47	4		4	TPTE	21	11020832	RNA	SNP	G	TCGA-05-4396-01A-21D-1855-08		11020832	37109063	17552	25703											
BAGE2	85319	broad.mit.edu	37	chr21	11039215	11039215	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgacaaattttggaggcctTgattcttctttggataccac	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11039215	G	G	11039215	1	3	9	0	1	0	0	0	0	0	0	0	1297	1827	63	5		5	BAGE2	21	11039215	3'UTR	SNP	T	TCGA-05-4396-01A-21D-1855-08	18383	11039215	37090680	17553	25704											
BAGE2	85319	broad.mit.edu	37	chr21	11047456	11047456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatataaaacatacagaGgatttaaaaaagtaaacaac	4	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11047456	T	T	11047456	1	4	9	0	1	0	0	0	0	0	0	0	1297	1015	35	2		2	BAGE2	21	11047456	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8241	11047456	37082439	17554	25705											
BAGE2	85319	broad.mit.edu	37	chr21	11047589	11047589	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcttgctatcttctccCgattgtctaaaaagtaagat	6	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11047589	A	A	11047589	1	1	9	0	1	0	0	0	0	0	0	0	1297	667	23	1		1	BAGE2	21	11047589	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	133	11047589	37082306	17555	25706											
SAMSN1	64092	broad.mit.edu	37	chr21	15870816	15870816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaccttcttctgtcatctGggttttcaatatttaattca	5	8	6	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15870816	T	T	15870816	3	4	9	1	0	0	0	0	1	0	0	0	13941	1348	47	2	263	2	SAMSN1	21	15870816	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	4823227	15870816	32259079	17556	25707											
CXADR	1525	broad.mit.edu	37	chr21	18890886	18890886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaattttctacaagatcGggaacatcatcatcctcctc	4	12	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18890886	T	T	18890886	1	4	9	0	1	0	0	0	0	0	0	0	4109	1131	39	1		1	CXADR	21	18890886	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3020070	18890886	29239009	17557	25708											
MRPL39	54148	broad.mit.edu	37	chr21	26961078	26961078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcatttttcccccctttGgttgttattggttaattttg	6	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26961078	T	T	26961078	1	4	9	0	1	0	0	0	0	0	0	0	9896	1363	47	2		2	MRPL39	21	26961078	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	8070192	26961078	21168817	17558	25709											
JAM2	58494	broad.mit.edu	37	chr21	27062247	27062247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtggaagaaactgggtcGgagtgtctcctttgtctact	13	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27062247	T	T	27062247	3	4	9	1	0	0	0	0	1	0	0	0	8013	1116	39	1	213	1	JAM2	21	27062247	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101169	27062247	21067648	17559	25710											
APP	351	broad.mit.edu	37	chr21	27369690	27369690	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtacgtttaacaggatctcGggcaagaggttcctgggtag	14	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27369690	T	T	27369690	2	4	9	1	0	0	0	0	0	0	0	1	817	1124	39	1		1	APP	21	27369690	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	307443	27369690	20760205	17560	25711											
APP	351	broad.mit.edu	37	chr21	27372472	27372472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcattgctcggcacggcccCgtctcggcttgttcagagca	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27372472	A	A	27372472	2	1	9	1	0	0	0	0	0	0	0	1	817	639	23	1		1	APP	21	27372472	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2782	27372472	20757423	17561	25712											
APP	351	broad.mit.edu	37	chr21	27425542	27425542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaataagaaagaatttatGggctggtacctctttggcga	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27425542	T	T	27425542	1	4	9	0	1	0	0	0	0	0	0	0	817	1363	47	2		2	APP	21	27425542	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	53070	27425542	20704353	17562	25713											
APP	351	broad.mit.edu	37	chr21	27425689	27425689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaggaaaaccacttccCgtcattccatctgtatcaca	5	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27425689	A	A	27425689	1	1	9	0	1	0	0	0	0	0	0	0	817	667	23	1		1	APP	21	27425689	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	147	27425689	20704206	17563	25714											
ADAMTS5	11096	broad.mit.edu	37	chr21	28302331	28302331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttctcacacacttccccCggacgcagacggaattactg	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28302331	A	A	28302331	3	1	9	1	0	0	0	0	1	0	0	0	269	652	23	1	701	1	ADAMTS5	21	28302331	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	876642	28302331	19827564	17564	25715											
ADAMTS5	11096	broad.mit.edu	37	chr21	28306956	28306956	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccatgccgggacacacGgagtactcaggcccgaatgt	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28306956	T	T	28306956	2	4	9	1	0	0	0	0	0	0	0	1	269	1103	39	1		1	ADAMTS5	21	28306956	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4625	28306956	19822939	17565	25716											
N6AMT1	29104	broad.mit.edu	37	chr21	30248727	30248727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagacttggtgaacttgaGgactgaaagagtttcttggc	12	6	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30248727	T	T	30248727	3	4	9	1	0	0	0	0	1	0	0	0	10208	1000	35	2	23	2	N6AMT1	21	30248727	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1941771	30248727	17881168	17566	25717											
N6AMT1	29104	broad.mit.edu	37	chr21	30250643	30250643	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaagctgcctctattcCgtgacttcctacctgtgaac	7	15	1	2	rs144728188		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30250643	A	A	30250643	4	1	9	1	0	0	0	0	0	1	0	0	10208	661	23	1	243	1	N6AMT1	21	30250643	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1916	30250643	17879252	17567	25718											
RNF160	26046	broad.mit.edu	37	chr21	30308991	30308991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcaaactctttgttttcCgaagatacatggaatacaaa	5	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30308991	A	A	30308991	3	1	9	1	0	0	0	0	1	0	0	0	13566	652	23	1	809	1	RNF160	21	30308991	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	58348	30308991	17820904	17568	25719											
RNF160	26046	broad.mit.edu	37	chr21	30309015	30309015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacatggaatacaaagccCgaagctggtggagagcaaag	13	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30309015	A	A	30309015	3	1	9	1	0	0	0	0	1	0	0	0	13566	652	23	1	833	1	RNF160	21	30309015	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	24	30309015	17820880	17569	25720											
RNF160	26046	broad.mit.edu	37	chr21	30324531	30324531	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcagatgaaatgcttcGggaaaggatcaacttagcaa	9	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30324531	T	T	30324531	2	4	9	1	0	0	0	0	0	0	0	1	13566	1124	39	1		1	RNF160	21	30324531	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	15516	30324531	17805364	17570	25721											
RNF160	26046	broad.mit.edu	37	chr21	30339394	30339394	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttttttcatctttttcCgtgtctgctttggcttccca	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30339394	A	A	30339394	2	1	9	1	0	0	0	0	0	0	0	1	13566	639	23	1		1	RNF160	21	30339394	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	14863	30339394	17790501	17571	25722											
USP16	10600	broad.mit.edu	37	chr21	30419555	30419555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtttatatcagttcaccCgtaatgagaaacttcgagat	7	7	2	2	rs142178023	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30419555	A	A	30419555	3	1	9	1	0	0	0	0	1	0	0	0	17173	652	23	1	1974	1	USP16	21	30419555	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80161	30419555	17710340	17572	25723											
GRIK1	2897	broad.mit.edu	37	chr21	30910084	30910084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggattatcaaggcatacGgacacttcagtaatgctata	8	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30910084	T	T	30910084	1	4	9	0	1	0	0	0	0	0	0	0	6839	1131	39	1		1	GRIK1	21	30910084	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	490529	30910084	17219811	17573	25724											
KRTAP27-1	643812	broad.mit.edu	37	chr21	31709602	31709602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgcaggttggcagctctGggctacaaaacccatctgct	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31709602	T	T	31709602	3	4	9	1	0	0	0	0	1	0	0	0	8616	1357	47	2	242	2	KRTAP27-1	21	31709602	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	799518	31709602	16420293	17574	25725											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31812904	31812904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccatcttctgcagtcccCgccagactaactacataaga	5	14	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31812904	A	A	31812904	3	1	9	1	0	0	0	0	1	0	0	0	8597	652	23	1	261	1	KRTAP15-1	21	31812904	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	103302	31812904	16316991	17575	25726											
KRTAP19-1	337882	broad.mit.edu	37	chr21	31852477	31852477	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaagccagagccatatcCgtagcttccaaagccagagc	8	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31852477	A	A	31852477	4	1	9	1	0	0	0	0	0	1	0	0	8599	661	23	1	114	1	KRTAP19-1	21	31852477	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39573	31852477	16277418	17576	25727											
TIAM1	7074	broad.mit.edu	37	chr21	32502548	32502548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacctgcactcgccaaagctCgaacctgcagcgcttccgtg	9	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32502548	A	A	32502548	3	1	9	1	0	0	0	0	1	0	0	0	16013	884	31	3	763	3	TIAM1	21	32502548	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	650071	32502548	15627347	17577	25728											
SFRS15	57466	broad.mit.edu	37	chr21	33043930	33043930	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggcttttcctttcctcGggcttcttccttctctctac	5	16	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33043930	T	T	33043930	2	4	9	1	0	0	0	0	0	0	0	1	14284	1124	39	1		1	SFRS15	21	33043930	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	541382	33043930	15085965	17578	25729											
HUNK	30811	broad.mit.edu	37	chr21	33318318	33318318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccgcagttttctaattcGgagcttgttttgttcacctc	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33318318	T	T	33318318	1	4	9	0	1	0	0	0	0	0	0	0	7528	1131	39	1		1	HUNK	21	33318318	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	274388	33318318	14811577	17579	25730											
HUNK	30811	broad.mit.edu	37	chr21	33318393	33318393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcctgggttactcggatcCgttcagcacacagtgtggca	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33318393	A	A	33318393	3	1	9	1	0	0	0	0	1	0	0	0	7528	652	23	1	670	1	HUNK	21	33318393	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	33318393	14811502	17580	25731											
HUNK	30811	broad.mit.edu	37	chr21	33370738	33370738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttcttctgaccttggcGggaactgtctcagttaagct	11	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33370738	T	T	33370738	1	4	9	0	1	0	0	0	0	0	0	0	7528	1131	39	1		1	HUNK	21	33370738	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	52345	33370738	14759157	17581	25732											
GCFC1	94104	broad.mit.edu	37	chr21	34133418	34133418	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcctgttcccatcggctGagctcttcatcctgttctcc	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34133418	T	T	34133418	2	4	9	1	0	0	0	0	0	0	0	1	6351	1277	45	3		3	GCFC1	21	34133418	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	762680	34133418	13996477	17582	25733											
IFNGR2	3460	broad.mit.edu	37	chr21	34799199	34799199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctttttcagtgactgtcGggcctccagaaaacattgag	9	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34799199	T	T	34799199	3	4	9	1	0	0	0	0	1	0	0	0	7620	1116	39	1	435	1	IFNGR2	21	34799199	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	665781	34799199	13330696	17583	25734											
GART	2618	broad.mit.edu	37	chr21	34878378	34878378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagagctatttggttccCgagtactgtctataagtgct	11	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34878378	A	A	34878378	3	1	9	1	0	0	0	0	1	0	0	0	6305	652	23	1	562	1	GART	21	34878378	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	79179	34878378	13251517	17584	25735											
SON	6651	broad.mit.edu	37	chr21	34923554	34923554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgaccgtgtcgcagtccCtggaggtgccctcgacgaca	13	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34923554	A	A	34923554	3	1	9	1	0	0	0	0	1	0	0	0	15040	680	24	2	2027	2	SON	21	34923554	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45176	34923554	13206341	17585	25736											
SON	6651	broad.mit.edu	37	chr21	34925404	34925404	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatggtatctgaaactccCgccatgtcagctgaaccaac	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34925404	A	A	34925404	2	1	9	1	0	0	0	0	0	0	0	1	15040	639	23	1		1	SON	21	34925404	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1850	34925404	13204491	17586	25737											
ITSN1	6453	broad.mit.edu	37	chr21	35183305	35183305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagccaaactggagaaccCggctggcttggaggagaatt	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35183305	A	A	35183305	2	1	9	1	0	0	0	0	0	0	0	1	7996	639	23	1		1	ITSN1	21	35183305	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	257901	35183305	12946590	17587	25738											
ITSN1	6453	broad.mit.edu	37	chr21	35190570	35190570	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttatgttattccacacaaGggtgaaaaggtggaggggct	13	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35190570	T	T	35190570	5	4	9	1	0	0	0	0	0	0	1	0	7996	1014	35	2	2813	2	ITSN1	21	35190570	Splice_Site	SNP	G	TCGA-05-4396-01A-21D-1855-08	7265	35190570	12939325	17588	25739											
ITSN1	6453	broad.mit.edu	37	chr21	35201849	35201849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgttcatctgtgaacctGggaggcgcctgcatcttctt	11	10	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35201849	T	T	35201849	1	4	9	0	1	0	0	0	0	0	0	0	7996	1363	47	2		2	ITSN1	21	35201849	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	11279	35201849	12928046	17589	25740											
ITSN1	6453	broad.mit.edu	37	chr21	35201956	35201956	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttattgcctcatacacCgccaccggccccgagcagct	9	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35201956	A	A	35201956	2	1	9	1	0	0	0	0	0	0	0	1	7996	639	23	1		1	ITSN1	21	35201956	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	107	35201956	12927939	17590	25741											
MORC3	23515	broad.mit.edu	37	chr21	37711142	37711142	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacattctctgttttccacGgaacagaagttactggcaga	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37711142	T	T	37711142	2	4	9	1	0	0	0	0	0	0	0	1	9797	1103	39	1		1	MORC3	21	37711142	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2509186	37711142	10418753	17591	25742											
CHAF1B	8208	broad.mit.edu	37	chr21	37781728	37781728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctgttcgctgctgtcCggtctactttgaactgaggc	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37781728	A	A	37781728	3	1	9	1	0	0	0	0	1	0	0	0	3343	652	23	1	918	1	CHAF1B	21	37781728	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	70586	37781728	10348167	17592	25743											
DYRK1A	1859	broad.mit.edu	37	chr21	38865409	38865409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgatatgtggtccctcGggtgtattttggttgaaatg	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38865409	T	T	38865409	3	4	9	1	0	0	0	0	1	0	0	0	4894	1116	39	1	1068	1	DYRK1A	21	38865409	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1083681	38865409	9264486	17593	25744											
KCNJ6	3763	broad.mit.edu	37	chr21	39086699	39086699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatatccgtctggttcaacGggatgaactccccctccgag	10	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39086699	T	T	39086699	3	4	9	1	0	0	0	0	1	0	0	0	8125	1116	39	1	518	1	KCNJ6	21	39086699	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	221290	39086699	9043196	17594	25745											
KCNJ6	3763	broad.mit.edu	37	chr21	39213100	39213100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagctatatctctcttcCttctttttcctaggtcagaa	4	11	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39213100	A	A	39213100	1	1	9	0	1	0	0	0	0	0	0	0	8125	696	24	2		2	KCNJ6	21	39213100	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	126401	39213100	8916795	17595	25746											
ERG	2078	broad.mit.edu	37	chr21	39755518	39755518	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgataggagcccatgtacGggaggtctgaggggtacttg	17	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39755518	C	C	39755518	3	2	9	1	0	0	0	0	1	0	0	0	5264	1116	39	4	196	4	ERG	21	39755518	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	542418	39755518	8374377	17596	25747											
BRWD1	54014	broad.mit.edu	37	chr21	40570770	40570770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgatctgaggaacactGggacatagcaatagggtcac	11	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40570770	T	T	40570770	3	4	9	1	0	0	0	0	1	0	0	0	1534	1357	47	2	1641	2	BRWD1	21	40570770	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	815252	40570770	7559125	17597	25748											
MX2	4600	broad.mit.edu	37	chr21	42749090	42749090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaagggcaatggtaagccCggtggagggacgttcagaaa	15	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42749090	A	A	42749090	1	1	9	0	1	0	0	0	0	0	0	0	10092	667	23	1		1	MX2	21	42749090	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	2178320	42749090	5380805	17598	25749											
MX2	4600	broad.mit.edu	37	chr21	42771195	42771195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaagggagaatgagaccCgtttatacaacaaaatcaga	9	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42771195	A	A	42771195	3	1	9	1	0	0	0	0	1	0	0	0	10092	652	23	1	1379	1	MX2	21	42771195	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	22105	42771195	5358700	17599	25750											
MX1	4599	broad.mit.edu	37	chr21	42813754	42813754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacatgattgtcaagtgccGgggccagcaggagatccagg	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42813754	T	T	42813754	3	4	9	1	0	0	0	0	1	0	0	0	10091	1116	39	1	864	1	MX1	21	42813754	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	42559	42813754	5316141	17600	25751											
TMPRSS2	7113	broad.mit.edu	37	chr21	42852383	42852383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgttactgtcactcggcGggtgctgccccatactcact	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42852383	T	T	42852383	1	4	9	0	1	0	0	0	0	0	0	0	16370	1131	39	1		1	TMPRSS2	21	42852383	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	38629	42852383	5277512	17601	25752											
RIPK4	54101	broad.mit.edu	37	chr21	43161345	43161345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgcagagcggtgtagcCgtctgaggtcatggcctcct	15	11	2	2	rs148192173	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43161345	A	A	43161345	3	1	9	1	0	0	0	0	1	0	0	0	13494	652	23	1	350	1	RIPK4	21	43161345	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	308962	43161345	4968550	17602	25753											
PRDM15	63977	broad.mit.edu	37	chr21	43222983	43222983	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgggcaccggagcaccCgcctcctcttctggcttctg	10	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43222983	G	G	43222983	2	3	9	1	0	0	0	0	0	0	0	1	12562	639	23	4		4	PRDM15	21	43222983	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	61638	43222983	4906912	17603	25754											
PRDM15	63977	broad.mit.edu	37	chr21	43259870	43259870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcagggggttccccccGgggtgtgtcctgctccttct	13	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43259870	T	T	43259870	2	4	9	1	0	0	0	0	0	0	0	1	12562	1115	39	1		1	PRDM15	21	43259870	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	36887	43259870	4870025	17604	25755											
ZNF295	49854	broad.mit.edu	37	chr21	43411925	43411925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgttcttgcttcagctcGggcgagaaaaacctgaggct	12	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43411925	T	T	43411925	2	4	9	1	0	0	0	0	0	0	0	1	17953	1103	39	1		1	ZNF295	21	43411925	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	152055	43411925	4717970	17605	25756											
UMODL1	89766	broad.mit.edu	37	chr21	43519138	43519138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccacactttccatgtccGggtttaccggggtatggagt	12	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43519138	T	T	43519138	3	4	9	1	0	0	0	0	1	0	0	0	17106	1116	39	1	1060	1	UMODL1	21	43519138	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	107213	43519138	4610757	17606	25757											
UMODL1	89766	broad.mit.edu	37	chr21	43522325	43522325	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtaaaccacaacctgacGgagaagttactcaaccgcag	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43522325	T	T	43522325	2	4	9	1	0	0	0	0	0	0	0	1	17106	1103	39	1		1	UMODL1	21	43522325	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3187	43522325	4607570	17607	25758											
UMODL1	89766	broad.mit.edu	37	chr21	43523994	43523994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggtcgagagctccttccCaccagtggtgtctgacttgt	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43523994	A	A	43523994	3	1	9	1	0	0	0	0	1	0	0	0	17106	594	21	2	1350	2	UMODL1	21	43523994	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1669	43523994	4605901	17608	25759											
ABCG1	9619	broad.mit.edu	37	chr21	43706078	43706078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttgggtctgaactgccCaacctaccacaacccagcag	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43706078	A	A	43706078	3	1	9	1	0	0	0	0	1	0	0	0	68	594	21	2	1145	2	ABCG1	21	43706078	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	182084	43706078	4423817	17609	25760											
TFF3	7033	broad.mit.edu	37	chr21	43732312	43732312	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcagcaatcacagccGggcaagggtgctccgagcct	14	14	1	0	rs145732362	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43732312	T	T	43732312	1	4	9	0	1	0	0	0	0	0	0	0	15928	1131	39	1		1	TFF3	21	43732312	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	26234	43732312	4397583	17610	25761											
UBASH3A	53347	broad.mit.edu	37	chr21	43829502	43829502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctttttgttgtgacagtGggtgatgccggcttgctctc	12	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43829502	T	T	43829502	1	4	9	0	1	0	0	0	0	0	0	0	16965	1363	47	2		2	UBASH3A	21	43829502	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	97190	43829502	4300393	17611	25762											
CBS	875	broad.mit.edu	37	chr21	44492095	44492095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaaaagcaggacttacGgggcagtgtggtgatgtggg	17	5	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44492095	T	T	44492095	3	4	9	1	0	0	0	0	1	0	0	0	2737	1130	39	1	1506	1	CBS	21	44492095	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	662593	44492095	3637800	17612	25763											
RRP1B	23076	broad.mit.edu	37	chr21	45094857	45094857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatttttgtttctctttGggaagtgggacgtgttggca	14	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45094857	T	T	45094857	1	4	9	0	1	0	0	0	0	0	0	0	13799	1363	47	2		2	RRP1B	21	45094857	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	602762	45094857	3035038	17613	25764											
AGPAT3	56894	broad.mit.edu	37	chr21	45402149	45402149	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaaaggcaaagtcatcCgtctcacctcttctctctct	5	14	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45402149	A	A	45402149	1	1	9	0	1	0	0	0	0	0	0	0	388	667	23	1		1	AGPAT3	21	45402149	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	307292	45402149	2727746	17614	25765											
TRAPPC10	7109	broad.mit.edu	37	chr21	45451942	45451942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtattcacctaaaaatatGgtaactgaatttctttcttc	4	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45451942	T	T	45451942	1	4	9	0	1	0	0	0	0	0	0	0	16581	1363	47	2		2	TRAPPC10	21	45451942	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	49793	45451942	2677953	17615	25766											
PFKL	5211	broad.mit.edu	37	chr21	45745066	45745066	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatgactactacaccacGgagttcctgtacaacctgta	7	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45745066	T	T	45745066	2	4	9	1	0	0	0	0	0	0	0	1	11859	1103	39	1		1	PFKL	21	45745066	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	293124	45745066	2384829	17616	25767											
TRPM2	7226	broad.mit.edu	37	chr21	45860689	45860689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgtacaaaggctacatGgatgacccgaggaacacgga	13	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45860689	T	T	45860689	3	4	9	1	0	0	0	0	1	0	0	0	16711	1348	47	2	4409	2	TRPM2	21	45860689	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	115623	45860689	2269206	17617	25768											
KRTAP10-11	386678	broad.mit.edu	37	chr21	46066455	46066455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgactgcccagagagctgctGtgagcccccctgcagcgccc	12	18	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066455	T	T	46066455	3	4	9	1	0	0	0	0	1	0	0	0	8578	1377	48	3	82	3	KRTAP10-11	21	46066455	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	205766	46066455	2063440	17618	25769											
KRTAP10-12	386685	broad.mit.edu	37	chr21	46117810	46117810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccgcctggcctcctgcGggtccctcctctgccgcccc	12	22	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46117810	T	T	46117810	3	4	9	1	0	0	0	0	1	0	0	0	8579	1116	39	1	696	1	KRTAP10-12	21	46117810	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	51355	46117810	2012085	17619	25770											
POFUT2	23275	broad.mit.edu	37	chr21	46698081	46698081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggctctgtctaacatcacGgacctgtttttaaacaacag	7	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46698081	T	T	46698081	2	4	9	1	0	0	0	0	0	0	0	1	12279	1103	39	1		1	POFUT2	21	46698081	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	580271	46698081	1431814	17620	25771											
MCM3AP	8888	broad.mit.edu	37	chr21	47656555	47656555	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatttatttcgtaggcAgaaactcaaaatcagttggg	8	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47656555	G	G	47656555	1	3	9	0	1	0	0	0	0	0	0	0	9481	203	7	5		5	MCM3AP	21	47656555	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	958474	47656555	473340	17621	25772											
MCM3AP	8888	broad.mit.edu	37	chr21	47681280	47681280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatgtgcctcaaaatgccCgtggttgcagctgttaacaa	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47681280	A	A	47681280	2	1	9	1	0	0	0	0	0	0	0	1	9481	639	23	1		1	MCM3AP	21	47681280	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	24725	47681280	448615	17622	25773											
MCM3AP	8888	broad.mit.edu	37	chr21	47699991	47699991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgcatcctctgtgctcGggctgacttcaccgtcacct	11	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47699991	T	T	47699991	3	4	9	1	0	0	0	0	1	0	0	0	9481	1116	39	1	4459	1	MCM3AP	21	47699991	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	18711	47699991	429904	17623	25774											
PCNT	5116	broad.mit.edu	37	chr21	47805792	47805792	+	Missense_Mutation	SNP	C	A	A													gtcacgagatagaagagtgcCgctccgagttggaggtgctg							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47805792	A	A	47805792	3	1	9	1	0	0	0	0	1	0	0	0	11684	652	23	1	3424	1	PCNT	21	47805792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	105801	47805792	324103	17624	25775	169	2									
PCNT	5116	broad.mit.edu	37	chr21	47805797	47805797	+	Silent	SNP	C	A	A													gagatagaagagtgccgctcCgagttggaggtgctgcagca					rs141878320		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47805797	A	A	47805797	2	1	9	1	0	0	0	0	0	0	0	1	11684	639	23	1		1	PCNT	21	47805797	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5	47805797	324098	17625	25776	169	2									
PCNT	5116	broad.mit.edu	37	chr21	47860064	47860064	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgaggcgcccagacccCggccggcttccaccagctgc	11	20	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47860064	A	A	47860064	2	1	9	1	0	0	0	0	0	0	0	1	11684	639	23	1		1	PCNT	21	47860064	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	54267	47860064	269831	17626	25777											
POTEH	23784	broad.mit.edu	37	chr22	16279384	16279384	+	Intron	SNP	C	A	A													gtggaaactttatataagatCttatggacttacatgcatag							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16279384	A	A	16279384	1	1	9	0	1	0	0	0	0	0	0	0	12363	928	32	3		3	POTEH	22	16279384	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08		16279384	35025182	17627	25778	170	2									
POTEH	23784	broad.mit.edu	37	chr22	16279387	16279387	+	Intron	SNP	A	T	T													gaaactttatataagatcttAtggacttacatgcatagaaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16279387	T	T	16279387	1	4	9	0	1	0	0	0	0	0	0	0	12363	464	16	5		5	POTEH	22	16279387	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	3	16279387	35025179	17628	25779	170	2									
SLC25A18	83733	broad.mit.edu	37	chr22	18064055	18064055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagctgggatgtgcccgcGggagcagggcatggaggcgg	20	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18064055	T	T	18064055	1	4	9	0	1	0	0	0	0	0	0	0	14594	1131	39	1		1	SLC25A18	22	18064055	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1784668	18064055	33240511	17629	25780											
MICAL3	57553	broad.mit.edu	37	chr22	18301203	18301203	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgcgtagctctctgtcGgacggggaccggggggttgg	20	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18301203	T	T	18301203	2	4	9	1	0	0	0	0	0	0	0	1	9664	1103	39	1		1	MICAL3	22	18301203	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	237148	18301203	33003363	17630	25781											
MICAL3	57553	broad.mit.edu	37	chr22	18387457	18387457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttcttggcacccagacctCgtagatcatgtatggtgaat	9	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18387457	A	A	18387457	3	1	9	1	0	0	0	0	1	0	0	0	9664	884	31	3	6452	3	MICAL3	22	18387457	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	86254	18387457	32917109	17631	25782											
MICAL3	57553	broad.mit.edu	37	chr22	18389364	18389364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtctttgtgactgcccCgtttgtccaattttgcccag	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18389364	A	A	18389364	3	1	9	1	0	0	0	0	1	0	0	0	9664	652	23	1	6654	1	MICAL3	22	18389364	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1907	18389364	32915202	17632	25783											
TUBA8	51807	broad.mit.edu	37	chr22	18566193	18566193	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgggattgggttttttgGggactgcagcattcttttat	13	4	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18566193	T	T	18566193	1	4	9	0	1	0	0	0	0	0	0	0	16876	1247	43	2		2	TUBA8	22	18566193	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	176829	18566193	32738373	17633	25784											
CLTCL1	8218	broad.mit.edu	37	chr22	19223225	19223225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagttacacacctgtccCtttttgttgacaccaataat	5	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19223225	A	A	19223225	3	1	9	1	0	0	0	0	1	0	0	0	3599	680	24	2	4067	2	CLTCL1	22	19223225	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	657032	19223225	32081341	17634	25785											
HIRA	7290	broad.mit.edu	37	chr22	19398266	19398266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagttgcgaacttggtccCgtcagggtgaatatcaactg	11	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19398266	A	A	19398266	3	1	9	1	0	0	0	0	1	0	0	0	7187	652	23	1	3076	1	HIRA	22	19398266	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	175041	19398266	31906300	17635	25786											
UFD1L	7353	broad.mit.edu	37	chr22	19438196	19438196	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccaacagtcctcacttaGggctttcttccctttttacg	6	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19438196	T	T	19438196	2	4	9	1	0	0	0	0	0	0	0	1	17061	987	35	2		2	UFD1L	22	19438196	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39930	19438196	31866370	17636	25787											
TBX1	6899	broad.mit.edu	37	chr22	19752635	19752635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcctaccagaaccatcGggtgagggcctgtggggagg	16	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19752635	T	T	19752635	3	4	9	1	0	0	0	0	1	0	0	0	15772	1130	39	1	857	1	TBX1	22	19752635	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	314439	19752635	31551931	17637	25788											
TXNRD2	10587	broad.mit.edu	37	chr22	19865925	19865925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcatctcgtccagccacCgtgaactccagtggtttata	9	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19865925	A	A	19865925	2	1	9	1	0	0	0	0	0	0	0	1	16934	639	23	1		1	TXNRD2	22	19865925	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	113290	19865925	31438641	17638	25789											
TXNRD2	10587	broad.mit.edu	37	chr22	19870926	19870926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggatcttctgagtgtcGgggctagtatctaccccagc	11	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19870926	T	T	19870926	2	4	9	1	0	0	0	0	0	0	0	1	16934	1103	39	1		1	TXNRD2	22	19870926	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	5001	19870926	31433640	17639	25790											
DGCR8	54487	broad.mit.edu	37	chr22	20080338	20080338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttaattttaagagaaccCaagtgagccttttggtgcct	8	7	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20080338	A	A	20080338	3	1	9	1	0	0	0	0	1	0	0	0	4504	594	21	2	1639	2	DGCR8	22	20080338	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	209412	20080338	31224228	17640	25791											
RTN4R	65078	broad.mit.edu	37	chr22	20230058	20230058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtcgaggctgtgcagccCacggaaggcgcgctcgggca	17	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20230058	A	A	20230058	3	1	9	1	0	0	0	0	1	0	0	0	13841	594	21	2	827	2	RTN4R	22	20230058	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	149720	20230058	31074508	17641	25792											
MED15	51586	broad.mit.edu	37	chr22	20921087	20921087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacaaatgttgtataccCaaccaccactgaaatttgtg	7	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20921087	A	A	20921087	3	1	9	1	0	0	0	0	1	0	0	0	9526	595	21	2	1050	2	MED15	22	20921087	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	691029	20921087	30383479	17642	25793											
PI4KA	5297	broad.mit.edu	37	chr22	21188862	21188862	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaattacctctgcctttccGagctgtgctttcttctaccc	5	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21188862	T	T	21188862	2	4	9	1	0	0	0	0	0	0	0	1	11968	1057	37	3		3	PI4KA	22	21188862	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	267775	21188862	30115704	17643	25794											
CRKL	1399	broad.mit.edu	37	chr22	21304128	21304128	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaaaacccagatgaaaacGagtgattgctgttgccctgt	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21304128	T	T	21304128	4	4	9	1	0	0	0	0	0	1	0	0	3917	1059	37	3	917	3	CRKL	22	21304128	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	115266	21304128	30000438	17644	25795											
LZTR1	8216	broad.mit.edu	37	chr22	21335119	21335119	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcccagaccctccaccCaatggtcttatctccctctg	6	18	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21335119	A	A	21335119	1	1	9	0	1	0	0	0	0	0	0	0	9225	609	21	2		2	LZTR1	22	21335119	5'Flank	SNP	C	TCGA-05-4396-01A-21D-1855-08	30991	21335119	29969447	17645	25796											
P2RX6	9127	broad.mit.edu	37	chr22	21377642	21377642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattcagcccctactgtccCgtgttccgcattggggacct	9	15	1	0	rs35102500		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21377642	A	A	21377642	2	1	9	1	0	0	0	0	0	0	0	1	11438	639	23	1		1	P2RX6	22	21377642	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	42523	21377642	29926924	17646	25797											
HIC2	23119	broad.mit.edu	37	chr22	21800496	21800496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacgagacggtgtcctacGgggacaacttgtatgtgtgc	14	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21800496	T	T	21800496	3	4	9	1	0	0	0	0	1	0	0	0	7169	1116	39	1	1318	1	HIC2	22	21800496	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	422854	21800496	29504070	17647	25798											
VPREB1	7441	broad.mit.edu	37	chr22	22599292	22599292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagggaacccccagatccCaaagactcctgccccttcct	8	17	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22599292	A	A	22599292	1	1	9	0	1	0	0	0	0	0	0	0	17313	609	21	2		2	VPREB1	22	22599292	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	798796	22599292	28705274	17648	25799											
RGL4	266747	broad.mit.edu	37	chr22	24034584	24034584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtttactatcagccccCgcaacggtcatctttccgga	7	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24034584	A	A	24034584	3	1	9	1	0	0	0	0	1	0	0	0	13387	652	23	1	248	1	RGL4	22	24034584	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1435292	24034584	27269982	17649	25800											
SMARCB1	6598	broad.mit.edu	37	chr22	24133958	24133958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataggtgggaaactacctcCgtatgttccgaggttctctg	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24133958	A	A	24133958	3	1	9	1	0	0	0	0	1	0	0	0	14888	652	23	1	115	1	SMARCB1	22	24133958	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	99374	24133958	27170608	17650	25801											
CABIN1	23523	broad.mit.edu	37	chr22	24480545	24480545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaggtggatcttatatGggaggatgcactgttcatgt	12	5	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24480545	T	T	24480545	3	4	9	1	0	0	0	0	1	0	0	0	2554	1357	47	2	3002	2	CABIN1	22	24480545	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	346587	24480545	26824021	17651	25802											
CABIN1	23523	broad.mit.edu	37	chr22	24573398	24573398	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggacctggggggagcGggtgggggcgagataaagtg	22	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24573398	T	T	24573398	1	4	9	0	1	0	0	0	0	0	0	0	2554	1131	39	1		1	CABIN1	22	24573398	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	92853	24573398	26731168	17652	25803											
SGSM1	129049	broad.mit.edu	37	chr22	25301097	25301097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggcagcacattgagatcGgctatgtccagggcatgtgt	13	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25301097	T	T	25301097	3	4	9	1	0	0	0	0	1	0	0	0	14335	1116	39	1	3012	1	SGSM1	22	25301097	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	727699	25301097	26003469	17653	25804											
CRYBB3	1417	broad.mit.edu	37	chr22	25597387	25597387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaacagcacggagcaccCgaacaggctgcagctggcaa	14	13	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25597387	A	A	25597387	2	1	9	1	0	0	0	0	0	0	0	1	3944	639	23	1		1	CRYBB3	22	25597387	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	296290	25597387	25707179	17654	25805											
MYO18B	84700	broad.mit.edu	37	chr22	26164827	26164827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaaggccccaaatccctgGgagaaagtggggaggtttcc	14	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26164827	T	T	26164827	3	4	9	1	0	0	0	0	1	0	0	0	10160	1232	43	2	954	2	MYO18B	22	26164827	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	567440	26164827	25139739	17655	25806											
SRRD	402055	broad.mit.edu	37	chr22	26884425	26884425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattgaagtccttaacaccCttggtgtgactgttctcagt	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26884425	A	A	26884425	3	1	9	1	0	0	0	0	1	0	0	0	15285	681	24	2	594	2	SRRD	22	26884425	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	719598	26884425	24420141	17656	25807											
TFIP11	24144	broad.mit.edu	37	chr22	26891992	26891992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctaaccacagaaaccaGggcaccaaagctgctgggct	10	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26891992	T	T	26891992	1	4	9	0	1	0	0	0	0	0	0	0	15930	1015	35	2		2	TFIP11	22	26891992	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	7567	26891992	24412574	17657	25808											
TFIP11	24144	broad.mit.edu	37	chr22	26892027	26892027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttggaatgcatttccCcttatccttacccagcttgg	9	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26892027	A	A	26892027	1	1	9	0	1	0	0	0	0	0	0	0	15930	638	22	2		2	TFIP11	22	26892027	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	35	26892027	24412539	17658	25809											
CRYBB1	1414	broad.mit.edu	37	chr22	26998003	26998003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctggggaaagagaggccGggtcaggtgtgtgaagtaca	17	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26998003	T	T	26998003	1	4	9	0	1	0	0	0	0	0	0	0	3942	1131	39	1		1	CRYBB1	22	26998003	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	105976	26998003	24306563	17659	25810											
CRYBA4	1413	broad.mit.edu	37	chr22	27019154	27019154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaacctctcacccttcacGggactctgatgcggatctcc	7	18	4	1	rs74847916	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27019154	T	T	27019154	1	4	9	0	1	0	0	0	0	0	0	0	3941	1131	39	1		1	CRYBA4	22	27019154	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21151	27019154	24285412	17660	25811											
EWSR1	2130	broad.mit.edu	37	chr22	29696164	29696164	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctactagatgcagagacccCgcagagctgcattgactacc	9	14	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29696164	A	A	29696164	1	1	9	0	1	0	0	0	0	0	0	0	5338	667	23	1		1	EWSR1	22	29696164	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	2677010	29696164	21608402	17661	25812											
AP1B1	162	broad.mit.edu	37	chr22	29759007	29759007	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgacatctttgcccacGgtcatcgatgcaatcacttt	6	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29759007	T	T	29759007	2	4	9	1	0	0	0	0	0	0	0	1	733	1103	39	1		1	AP1B1	22	29759007	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	62843	29759007	21545559	17662	25813											
NEFH	4744	broad.mit.edu	37	chr22	29884864	29884864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaaggtgaagagtgtcGgattggctttggcccaattc	14	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29884864	T	T	29884864	3	4	9	1	0	0	0	0	1	0	0	0	10409	1116	39	1	1249	1	NEFH	22	29884864	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	125857	29884864	21419702	17663	25814											
THOC5	8563	broad.mit.edu	37	chr22	29916988	29916988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaactgctgactcaccCaactttatcaaactgatact	6	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29916988	A	A	29916988	3	1	9	1	0	0	0	0	1	0	0	0	15991	608	21	2	807	2	THOC5	22	29916988	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32124	29916988	21387578	17664	25815											
THOC5	8563	broad.mit.edu	37	chr22	29925154	29925154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaccaccacattaccttGggagtcctctggaggtttga	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29925154	T	T	29925154	3	4	9	1	0	0	0	0	1	0	0	0	15991	1357	47	2	1177	2	THOC5	22	29925154	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	8166	29925154	21379412	17665	25816											
ASCC2	84164	broad.mit.edu	37	chr22	30185034	30185034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcctttgctcctcttgcGgtcggccatggttctccggt	11	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30185034	T	T	30185034	3	4	9	1	0	0	0	0	1	0	0	0	1036	1116	39	1	35	1	ASCC2	22	30185034	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	259880	30185034	21119532	17666	25817											
ASCC2	84164	broad.mit.edu	37	chr22	30202271	30202271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagtgcatcatagtccCggaggaacctgcaggcagat	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30202271	A	A	30202271	3	1	9	1	0	0	0	0	1	0	0	0	1036	652	23	1	1215	1	ASCC2	22	30202271	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17237	30202271	21102295	17667	25818											
MTMR3	8897	broad.mit.edu	37	chr22	30412618	30412618	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaggaacggacatgttcCgtgtggtcacttcttcgggc	12	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30412618	A	A	30412618	2	1	9	1	0	0	0	0	0	0	0	1	10039	639	23	1		1	MTMR3	22	30412618	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	210347	30412618	20891948	17668	25819											
MTMR3	8897	broad.mit.edu	37	chr22	30412635	30412635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgtgtggtcacttcttcGggcaggcaacaaggctttca	11	11	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30412635	T	T	30412635	3	4	9	1	0	0	0	0	1	0	0	0	10039	1116	39	1	1672	1	MTMR3	22	30412635	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17	30412635	20891931	17669	25820											
SF3A1	10291	broad.mit.edu	37	chr22	30738263	30738263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatctgagcataggccaccCgctccttctccttctcctct	6	18	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30738263	A	A	30738263	3	1	9	1	0	0	0	0	1	0	0	0	14259	652	23	1	1622	1	SF3A1	22	30738263	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	325628	30738263	20566303	17670	25821											
CCDC157	550631	broad.mit.edu	37	chr22	30762086	30762086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacgtcttctcccgcgccGggcctgtgcgcttcccctcc	10	19	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30762086	T	T	30762086	3	4	9	1	0	0	0	0	1	0	0	0	2816	1116	39	1	99	1	CCDC157	22	30762086	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	23823	30762086	20542480	17671	25822											
SEC14L4	284904	broad.mit.edu	37	chr22	30890245	30890245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgttccatcacctccCgcccatgggtttctgtggcc	10	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30890245	A	A	30890245	1	1	9	0	1	0	0	0	0	0	0	0	14097	667	23	1		1	SEC14L4	22	30890245	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	128159	30890245	20414321	17672	25823											
PES1	23481	broad.mit.edu	37	chr22	30976095	30976095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaatctgatgggtgatgcGggagtctgtgacgtcatagg	16	6	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30976095	T	T	30976095	3	4	9	1	0	0	0	0	1	0	0	0	11827	1116	39	1	672	1	PES1	22	30976095	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	85850	30976095	20328471	17673	25824											
MORC2	22880	broad.mit.edu	37	chr22	31328971	31328971	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacggctgtgacacggccCgtgtaccactccctgttcac	9	17	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31328971	A	A	31328971	2	1	9	1	0	0	0	0	0	0	0	1	9796	639	23	1		1	MORC2	22	31328971	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	352876	31328971	19975595	17674	25825											
RNF185	91445	broad.mit.edu	37	chr22	31600627	31600627	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactggtgacgtgccaccCcaactcctggtgtttggctt	12	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31600627	A	A	31600627	1	1	9	0	1	0	0	0	0	0	0	0	13579	638	22	2		2	RNF185	22	31600627	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	271656	31600627	19703939	17675	25826											
SLC5A1	6523	broad.mit.edu	37	chr22	32445951	32445951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgttttccaccaatcgtGggactgttggaggcttcttc	10	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32445951	T	T	32445951	3	4	9	1	0	0	0	0	1	0	0	0	14775	1348	47	2	163	2	SLC5A1	22	32445951	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	845324	32445951	18858615	17676	25827											
C22orf42	150297	broad.mit.edu	37	chr22	32546408	32546408	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataggctttcactgagatcCgatgtcatgaagtcttcaag	10	8	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32546408	A	A	32546408	2	1	9	1	0	0	0	0	0	0	0	1	2171	639	23	1		1	C22orf42	22	32546408	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	100457	32546408	18758158	17677	25828											
SLC5A4	6527	broad.mit.edu	37	chr22	32625220	32625220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctccgacgcttgcttcCgcatcttggtgtagaggtca	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32625220	A	A	32625220	3	1	9	1	0	0	0	0	1	0	0	0	14781	652	23	1	758	1	SLC5A4	22	32625220	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78812	32625220	18679346	17678	25829											
SLC5A4	6527	broad.mit.edu	37	chr22	32650194	32650194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacctcggttggtcttcaGcatcgcctgagcagaaggga	13	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32650194	T	T	32650194	3	4	9	1	0	0	0	0	1	0	0	0	14781	962	34	3	1893	3	SLC5A4	22	32650194	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	24974	32650194	18654372	17679	25830											
C22orf28	51493	broad.mit.edu	37	chr22	32792066	32792066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttctactgtacctgacGggttaagaaggtcatggaag	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32792066	T	T	32792066	3	4	9	1	0	0	0	0	1	0	0	0	2162	1116	39	1	552	1	C22orf28	22	32792066	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	141872	32792066	18512500	17680	25831											
C22orf28	51493	broad.mit.edu	37	chr22	32802739	32802739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatggacatcaggaagccCaatagatcgctgaaaaagaa	10	7	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32802739	A	A	32802739	3	1	9	1	0	0	0	0	1	0	0	0	2162	594	21	2	1303	2	C22orf28	22	32802739	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10673	32802739	18501827	17681	25832											
SYN3	8224	broad.mit.edu	37	chr22	33229816	33229816	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaaatgggaaaatccacGgaaagcatttagcactgatc	9	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33229816	T	T	33229816	1	4	9	0	1	0	0	0	0	0	0	0	15561	1131	39	1		1	SYN3	22	33229816	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	427077	33229816	18074750	17682	25833											
SYN3	8224	broad.mit.edu	37	chr22	33229954	33229954	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaagtggggaactaccCacatgaccatcctcctgctt	10	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33229954	A	A	33229954	1	1	9	0	1	0	0	0	0	0	0	0	15561	609	21	2		2	SYN3	22	33229954	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	138	33229954	18074612	17683	25834											
LARGE	9215	broad.mit.edu	37	chr22	33673115	33673115	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaacctccggtcgtactcCgggcagtcacgtctcacaac	8	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33673115	A	A	33673115	2	1	9	1	0	0	0	0	0	0	0	1	8699	639	23	1		1	LARGE	22	33673115	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	443161	33673115	17631451	17684	25835											
LARGE	9215	broad.mit.edu	37	chr22	34022203	34022203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgacagacctcagccCacacagcacagaagttgttc	10	13	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34022203	A	A	34022203	1	1	9	0	1	0	0	0	0	0	0	0	8699	609	21	2		2	LARGE	22	34022203	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	349088	34022203	17282363	17685	25836											
TOM1	10043	broad.mit.edu	37	chr22	35728982	35728982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcttgtaggtttgaacGgttccgaacaggccagacca	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35728982	T	T	35728982	3	4	9	1	0	0	0	0	1	0	0	0	16474	1116	39	1	942	1	TOM1	22	35728982	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1706779	35728982	15575584	17686	25837											
CACNG2	10369	broad.mit.edu	37	chr22	36962378	36962378	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccttcttcccagtggcaGgactggatcagtggctgtta	12	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36962378	C	C	36962378	1	2	9	0	1	0	0	0	0	0	0	0	2583	1015	35	4		4	CACNG2	22	36962378	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1233396	36962378	14342188	17687	25838											
NCF4	4689	broad.mit.edu	37	chr22	37260048	37260048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcccacaaaacacatcaGggtgataagcaggatctctt	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37260048	T	T	37260048	1	4	9	0	1	0	0	0	0	0	0	0	10313	1015	35	2		2	NCF4	22	37260048	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	297670	37260048	14044518	17688	25839											
KCTD17	79734	broad.mit.edu	37	chr22	37455446	37455446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccacagcaccccaaacGggctgagctcagagtccagc	10	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37455446	T	T	37455446	3	4	9	1	0	0	0	0	1	0	0	0	8174	1116	39	1	619	1	KCTD17	22	37455446	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	195398	37455446	13849120	17689	25840											
ELFN2	114794	broad.mit.edu	37	chr22	37770520	37770520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtactcagtgtgcgccCgcagtttgtccagcgtcacg	13	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37770520	A	A	37770520	3	1	9	1	0	0	0	0	1	0	0	0	5100	652	23	1	1411	1	ELFN2	22	37770520	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	315074	37770520	13534046	17690	25841											
TRIOBP	11078	broad.mit.edu	37	chr22	38121115	38121115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacccacttgtacacagcGggaccgcacacagtcctttt	8	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38121115	T	T	38121115	3	4	9	1	0	0	0	0	1	0	0	0	16678	1116	39	1	2570	1	TRIOBP	22	38121115	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	350595	38121115	13183451	17691	25842											
TRIOBP	11078	broad.mit.edu	37	chr22	38155418	38155418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcatctcatttactctccCcacagctggtgggcgtgatc	9	14	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38155418	A	A	38155418	1	1	9	0	1	0	0	0	0	0	0	0	16678	638	22	2		2	TRIOBP	22	38155418	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	34303	38155418	13149148	17692	25843											
GCAT	23464	broad.mit.edu	37	chr22	38206263	38206263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcagctcagccacagccCtgggcctactgttggcctca	10	16	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38206263	A	A	38206263	1	1	9	0	1	0	0	0	0	0	0	0	6346	696	24	2		2	GCAT	22	38206263	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50845	38206263	13098303	17693	25844											
PICK1	9463	broad.mit.edu	37	chr22	38467719	38467719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaccaagaacctcctacGggccttttatgagctgtcgc	8	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38467719	T	T	38467719	3	4	9	1	0	0	0	0	1	0	0	0	11976	1116	39	1	550	1	PICK1	22	38467719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	261456	38467719	12836847	17694	25845											
CSNK1E	1454	broad.mit.edu	37	chr22	38689301	38689301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggctctcctcacttccCgagatggtcaaatggcacac	11	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38689301	A	A	38689301	3	1	9	1	0	0	0	0	1	0	0	0	3987	652	23	1	11	1	CSNK1E	22	38689301	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	221582	38689301	12615265	17695	25846											
CSNK1E	1454	broad.mit.edu	37	chr22	38776982	38776982	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcggttgctcctttaaattCgtttgtctgtggactagcgg	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38776982	A	A	38776982	1	1	9	0	1	0	0	0	0	0	0	0	3987	899	31	3		3	CSNK1E	22	38776982	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	87681	38776982	12527584	17696	25847											
KDELR3	11015	broad.mit.edu	37	chr22	38875643	38875643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagtgtacatgatatatGggaaattccgtaaaactttt	7	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38875643	T	T	38875643	3	4	9	1	0	0	0	0	1	0	0	0	8191	1348	47	2	248	2	KDELR3	22	38875643	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	98661	38875643	12428923	17697	25848											
KDELR3	11015	broad.mit.edu	37	chr22	38875707	38875707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagtttcttctggtccCagtcattggcctttccttcc	8	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38875707	A	A	38875707	3	1	9	1	0	0	0	0	1	0	0	0	8191	594	21	2	312	2	KDELR3	22	38875707	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	64	38875707	12428859	17698	25849											
TOMM22	56993	broad.mit.edu	37	chr22	39078866	39078866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcatgctcaccctctGgggattttcctctgcaggtt	9	12	5	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39078866	T	T	39078866	1	4	9	0	1	0	0	0	0	0	0	0	16479	1363	47	2		2	TOMM22	22	39078866	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	203159	39078866	12225700	17699	25850											
MGAT3	4248	broad.mit.edu	37	chr22	39884113	39884113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcggccgctcaagttccGggagatgctgaccaatggca	14	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39884113	T	T	39884113	3	4	9	1	0	0	0	0	1	0	0	0	9637	1116	39	1	763	1	MGAT3	22	39884113	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	805247	39884113	11420453	17700	25851											
MGAT3	4248	broad.mit.edu	37	chr22	39884185	39884185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttcctggaccacttccCgcccggcggccggcaggacg	13	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39884185	A	A	39884185	3	1	9	1	0	0	0	0	1	0	0	0	9637	652	23	1	835	1	MGAT3	22	39884185	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72	39884185	11420381	17701	25852											
CACNA1I	8911	broad.mit.edu	37	chr22	40061970	40061970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcatggccgccaactacCgctgggtccatcacaaatac	8	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40061970	A	A	40061970	3	1	9	1	0	0	0	0	1	0	0	0	2572	652	23	1	4153	1	CACNA1I	22	40061970	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	177785	40061970	11242596	17702	25853											
ENTHD1	150350	broad.mit.edu	37	chr22	40271887	40271887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatcacagttgagggaccCacagcatgatctagatcgag	10	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40271887	A	A	40271887	1	1	9	0	1	0	0	0	0	0	0	0	5179	609	21	2		2	ENTHD1	22	40271887	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	209917	40271887	11032679	17703	25854											
TNRC6B	23112	broad.mit.edu	37	chr22	40574202	40574202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatatggatcttgtctaacCgttttcactggtggtgttgc	10	7	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40574202	A	A	40574202	1	1	9	0	1	0	0	0	0	0	0	0	16464	667	23	1		1	TNRC6B	22	40574202	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	302315	40574202	10730364	17704	25855											
TNRC6B	23112	broad.mit.edu	37	chr22	40675949	40675949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcactcttggttcatgGgggaaacattgattctggaa	12	7	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40675949	T	T	40675949	1	4	9	0	1	0	0	0	0	0	0	0	16464	1247	43	2		2	TNRC6B	22	40675949	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	101747	40675949	10628617	17705	25856											
ADSL	158	broad.mit.edu	37	chr22	40754858	40754858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttcgtgtgttctctttGggttttcaggcctgcacagc	11	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40754858	T	T	40754858	1	4	9	0	1	0	0	0	0	0	0	0	346	1363	47	2		2	ADSL	22	40754858	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	78909	40754858	10549708	17706	25857											
MCHR1	2847	broad.mit.edu	37	chr22	41075800	41075800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgggaaggtttcaccCctgagccaaactgcttggga	12	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41075800	A	A	41075800	1	1	9	0	1	0	0	0	0	0	0	0	9475	638	22	2		2	MCHR1	22	41075800	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	320942	41075800	10228766	17707	25858											
XPNPEP3	63929	broad.mit.edu	37	chr22	41305196	41305196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtggctggtggtaatcGgtcaaacactttgcactatg	13	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41305196	T	T	41305196	3	4	9	1	0	0	0	0	1	0	0	0	17571	1116	39	1	948	1	XPNPEP3	22	41305196	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	229396	41305196	9999370	17708	25859											
XRCC6	2547	broad.mit.edu	37	chr22	42049610	42049610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtgcagatacacacccCgcaggaacatccctccttat	6	15	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42049610	A	A	42049610	3	1	9	1	0	0	0	0	1	0	0	0	17584	652	23	1	1237	1	XRCC6	22	42049610	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	744414	42049610	9254956	17709	25860											
SREBF2	6721	broad.mit.edu	37	chr22	42263193	42263193	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagctgcaacaacagacGgtaatgatcacgccaacatt	7	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42263193	T	T	42263193	2	4	9	1	0	0	0	0	0	0	0	1	15260	1103	39	1		1	SREBF2	22	42263193	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	213583	42263193	9041373	17710	25861											
SREBF2	6721	broad.mit.edu	37	chr22	42271492	42271492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcttgtcagccctggccCaggtggggctttgtaaaagc	14	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42271492	A	A	42271492	1	1	9	0	1	0	0	0	0	0	0	0	15260	609	21	2		2	SREBF2	22	42271492	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8299	42271492	9033074	17711	25862											
WBP2NL	164684	broad.mit.edu	37	chr22	42321584	42321584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagagggggtagaggctcCgtactcagtcacagccttcc	14	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42321584	A	A	42321584	1	1	9	0	1	0	0	0	0	0	0	0	17387	667	23	1		1	WBP2NL	22	42321584	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	50092	42321584	8982982	17712	25863											
WBP2NL	164684	broad.mit.edu	37	chr22	42423061	42423061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgcaggaaatgaaggccCgcctgcgggatacagagcct	13	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42423061	A	A	42423061	3	1	9	1	0	0	0	0	1	0	0	0	17387	652	23	1	828	1	WBP2NL	22	42423061	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	101477	42423061	8881505	17713	25864											
TCF20	6942	broad.mit.edu	37	chr22	42575632	42575632	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacctgcatcaatggcacacGggtaatggtatcggaaggag	13	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42575632	C	C	42575632	3	2	9	1	0	0	0	0	1	0	0	0	15812	1116	39	4	184	4	TCF20	22	42575632	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	152571	42575632	8728934	17714	25865											
ARFGAP3	26286	broad.mit.edu	37	chr22	43195009	43195009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaactgctgaacctacCgtcatagccagtgagcactg	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43195009	A	A	43195009	1	1	9	0	1	0	0	0	0	0	0	0	853	667	23	1		1	ARFGAP3	22	43195009	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	619377	43195009	8109557	17715	25866											
PACSIN2	11252	broad.mit.edu	37	chr22	43273001	43273001	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagactgggcggggttgctCgggacattaagggtgctatg	18	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43273001	A	A	43273001	2	1	9	1	0	0	0	0	0	0	0	1	11469	871	31	3		3	PACSIN2	22	43273001	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	77992	43273001	8031565	17716	25867											
TTLL1	25809	broad.mit.edu	37	chr22	43442488	43442488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgggatttcaccattcGggacggcgatgttgagggtg	16	7	2	1	rs147645341		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43442488	T	T	43442488	3	4	9	1	0	0	0	0	1	0	0	0	16848	1116	39	1	209	1	TTLL1	22	43442488	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	169487	43442488	7862078	17717	25868											
TTLL1	25809	broad.mit.edu	37	chr22	43459883	43459883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagctcactggtactcGgggtgtatttcactgtgcag	12	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43459883	T	T	43459883	3	4	9	1	0	0	0	0	1	0	0	0	16848	1116	39	1	608	1	TTLL1	22	43459883	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	17395	43459883	7844683	17718	25869											
TTLL1	25809	broad.mit.edu	37	chr22	43464434	43464434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaagatgtcttgctgtccCgggaccactttttgatctgt	10	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43464434	A	A	43464434	3	1	9	1	0	0	0	0	1	0	0	0	16848	652	23	1	814	1	TTLL1	22	43464434	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4551	43464434	7840132	17719	25870											
SCUBE1	80274	broad.mit.edu	37	chr22	43654353	43654353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggttactagttaggccCaaagtgtacacacgggtgta	11	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43654353	A	A	43654353	1	1	9	0	1	0	0	0	0	0	0	0	14057	609	21	2		2	SCUBE1	22	43654353	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	189919	43654353	7650213	17720	25871											
PNPLA3	80339	broad.mit.edu	37	chr22	44342001	44342001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactgcagcagcgggaacGgcctctaagccaacttcctc	9	16	1	0	rs56680842	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44342001	T	T	44342001	1	4	9	0	1	0	0	0	0	0	0	0	12261	1131	39	1		1	PNPLA3	22	44342001	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	687648	44342001	6962565	17721	25872											
SAMM50	25813	broad.mit.edu	37	chr22	44392062	44392062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaaggaggaagcagccGgggccggtgagggtgaggcc	20	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44392062	T	T	44392062	1	4	9	0	1	0	0	0	0	0	0	0	13940	1131	39	1		1	SAMM50	22	44392062	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	50061	44392062	6912504	17722	25873											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45218338	45218338	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagctggtcatccctccCgaagttttgcggtaagtgcc	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45218338	A	A	45218338	2	1	9	1	0	0	0	0	0	0	0	1	12707	639	23	1		1	PRR5-ARHGAP8	22	45218338	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	826276	45218338	6086228	17723	25874											
PHF21B	112885	broad.mit.edu	37	chr22	45279034	45279034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagggcttggtccagggccCggccagcagtggggcagggc	20	11	0	1	rs115427466	by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45279034	A	A	45279034	3	1	9	1	0	0	0	0	1	0	0	0	11929	652	23	1	71	1	PHF21B	22	45279034	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	60696	45279034	6025532	17724	25875											
PHF21B	112885	broad.mit.edu	37	chr22	45309780	45309780	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgagatggctcctctgtGggcggccgcgactctgccgt	14	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45309780	T	T	45309780	2	4	9	1	0	0	0	0	0	0	0	1	11929	1335	47	2		2	PHF21B	22	45309780	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	30746	45309780	5994786	17725	25876											
SMC1B	27127	broad.mit.edu	37	chr22	45740442	45740442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaggactgcccctagcGggactctccgtgtctcttgc	12	15	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45740442	T	T	45740442	3	4	9	1	0	0	0	0	1	0	0	0	14896	1116	39	1	8	1	SMC1B	22	45740442	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	430662	45740442	5564124	17726	25877											
FBLN1	2192	broad.mit.edu	37	chr22	45938099	45938099	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgctgcgtgaactctccCggcagtttccgctgcgaatg	11	14	1	1	rs148743251	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45938099	A	A	45938099	2	1	9	1	0	0	0	0	0	0	0	1	5755	639	23	1		1	FBLN1	22	45938099	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	197657	45938099	5366467	17727	25878											
C22orf40	150383	broad.mit.edu	37	chr22	46641089	46641089	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagcattgatgttctccCggacacaagggaggcagaat	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46641089	G	G	46641089	3	3	9	1	0	0	0	0	1	0	0	0	2170	652	23	4	103	4	C22orf40	22	46641089	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	702990	46641089	4663477	17728	25879											
PKDREJ	10343	broad.mit.edu	37	chr22	46653728	46653728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagttttttgtgtcttctGggtcaatgccatatttgggg	11	5	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46653728	T	T	46653728	3	4	9	1	0	0	0	0	1	0	0	0	12065	1348	47	2	1273	2	PKDREJ	22	46653728	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12639	46653728	4650838	17729	25880											
TTC38	55020	broad.mit.edu	37	chr22	46684265	46684265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagggaggcccttgcacGggacatgccccagagcctca	14	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46684265	T	T	46684265	1	4	9	0	1	0	0	0	0	0	0	0	16832	1131	39	1		1	TTC38	22	46684265	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30537	46684265	4620301	17730	25881											
CERK	64781	broad.mit.edu	37	chr22	47116856	47116856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactgccttgatgtttccCgtgaacgtctgtttcctcaa	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47116856	A	A	47116856	3	1	9	1	0	0	0	0	1	0	0	0	3297	652	23	1	1462	1	CERK	22	47116856	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	432591	47116856	4187710	17731	25882											
BRD1	23774	broad.mit.edu	37	chr22	50192287	50192287	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgagcgcagcagcacCgtcagcggggtcagccgcag	15	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50192287	A	A	50192287	2	1	9	1	0	0	0	0	0	0	0	1	1510	639	23	1		1	BRD1	22	50192287	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3075431	50192287	1112279	17732	25883											
ZBED4	9889	broad.mit.edu	37	chr22	50278736	50278736	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatggacagcctcaaggccGagtgtcggtactgcggctgt	14	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50278736	T	T	50278736	4	4	9	1	0	0	0	0	0	1	0	0	17646	1059	37	3	1428	3	ZBED4	22	50278736	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86449	50278736	1025830	17733	25884											
ZBED4	9889	broad.mit.edu	37	chr22	50278881	50278881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtctggcaaactctcCgtatgccactttggcctctg	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50278881	A	A	50278881	3	1	9	1	0	0	0	0	1	0	0	0	17646	652	23	1	1573	1	ZBED4	22	50278881	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	145	50278881	1025685	17734	25885											
ALG12	79087	broad.mit.edu	37	chr22	50298118	50298118	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatcacaagcagagacccCgctttgtacagccaagactt	8	14	1	2	rs62233155	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50298118	A	A	50298118	2	1	9	1	0	0	0	0	0	0	0	1	514	639	23	1		1	ALG12	22	50298118	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	19237	50298118	1006448	17735	25886											
MOV10L1	54456	broad.mit.edu	37	chr22	50547116	50547116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcctctgtggaaggaacGgggtgttagaggaaagcatc	15	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50547116	T	T	50547116	3	4	9	1	0	0	0	0	1	0	0	0	9813	1116	39	1	645	1	MOV10L1	22	50547116	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	248998	50547116	757450	17736	25887											
MOV10L1	54456	broad.mit.edu	37	chr22	50547182	50547182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagatgggtacacacccCggagaggtgacgtggtcaat	14	10	1	3	rs148898787		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50547182	A	A	50547182	2	1	9	1	0	0	0	0	0	0	0	1	9813	643	23	1		1	MOV10L1	22	50547182	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66	50547182	757384	17737	25888											
MOV10L1	54456	broad.mit.edu	37	chr22	50581670	50581670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaggacagcggcgccgcGggtgctgtggctctgtgctg	19	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50581670	T	T	50581670	1	4	9	0	1	0	0	0	0	0	0	0	9813	1131	39	1		1	MOV10L1	22	50581670	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	34488	50581670	722896	17738	25889											
SELO	83642	broad.mit.edu	37	chr22	50646950	50646950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgggctgttgacgcctcGggtcttccctccaggtttgg	14	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50646950	T	T	50646950	1	4	9	0	1	0	0	0	0	0	0	0	14131	1131	39	1		1	SELO	22	50646950	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	65280	50646950	657616	17739	25890											
TUBGCP6	85378	broad.mit.edu	37	chr22	50662905	50662905	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccccagcaaggcccccCggaactgcagaagggaggac	15	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50662905	A	A	50662905	1	1	9	0	1	0	0	0	0	0	0	0	16896	667	23	1		1	TUBGCP6	22	50662905	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	15955	50662905	641661	17740	25891											
SAPS2	9701	broad.mit.edu	37	chr22	50845111	50845111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtgcttggactgtgccCttttagatatccaaacacag	8	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50845111	A	A	50845111	1	1	9	0	1	0	0	0	0	0	0	0	13949	696	24	2		2	SAPS2	22	50845111	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	182206	50845111	459455	17741	25892											
MIOX	55586	broad.mit.edu	37	chr22	50926404	50926404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggatgagtcggacccGgacgtagatttccccaactc	12	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50926404	T	T	50926404	2	4	9	1	0	0	0	0	0	0	0	1	9683	1103	39	1		1	MIOX	22	50926404	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	81293	50926404	378162	17742	25893											
CPT1B	1375	broad.mit.edu	37	chr22	51009549	51009549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagagggggcacctcaccCgacgactgtgacccccacat	12	16	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51009549	A	A	51009549	1	1	9	0	1	0	0	0	0	0	0	0	3864	667	23	1		1	CPT1B	22	51009549	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	83145	51009549	295017	17743	25894											
CPT1B	1375	broad.mit.edu	37	chr22	51012990	51012990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatgatgtttcccaggcGggctgcctgcacgtctgtat	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51012990	T	T	51012990	3	4	9	1	0	0	0	0	1	0	0	0	3864	1116	39	1	1549	1	CPT1B	22	51012990	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3441	51012990	291576	17744	25895											
CPT1B	1375	broad.mit.edu	37	chr22	51015290	51015290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggctgctgctcacagccCagatcctggtcaagttgctg	11	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51015290	A	A	51015290	3	1	9	1	0	0	0	0	1	0	0	0	3864	595	21	2	1927	2	CPT1B	22	51015290	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2300	51015290	289276	17745	25896											
PLCXD1	55344	broad.mit.edu	37	chrX	205462	205462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttcgcacgaggagtccCggctgctgcagctgctgaac	12	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205462	A	A	205462	2	1	9	1	0	0	0	0	0	0	0	1	12136	643	23	1		1	PLCXD1	23	205462	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08		205462	155065098	17746	25897											
PPP2R3B	28227	broad.mit.edu	37	chrX	302048	302048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggaacccacctggtcGgtgtttttttgtcttcctca	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	302048	T	T	302048	3	4	9	1	0	0	0	0	1	0	0	0	12490	1116	39	1	578	1	PPP2R3B	23	302048	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	96586	302048	154968512	17747	25898											
PPP2R3B	28227	broad.mit.edu	37	chrX	320406	320406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacacctctacaaatacGgagtgacttagcaaaaacaa	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	320406	T	T	320406	1	4	9	0	1	0	0	0	0	0	0	0	12490	1131	39	1		1	PPP2R3B	23	320406	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	18358	320406	154950154	17748	25899											
PPP2R3B	28227	broad.mit.edu	37	chrX	320603	320603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaaacagcacagacagGgacagaacctggacttacct	11	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	320603	T	T	320603	1	4	9	0	1	0	0	0	0	0	0	0	12490	1247	43	2		2	PPP2R3B	23	320603	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	197	320603	154949957	17749	25900											
PPP2R3B	28227	broad.mit.edu	37	chrX	322315	322315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagaggctcttctttcCgtgtctgaacctgaagagtc	13	10	3	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	322315	A	A	322315	3	1	9	1	0	0	0	0	1	0	0	0	12490	652	23	1	1440	1	PPP2R3B	23	322315	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1712	322315	154948245	17750	25901											
CSF2RA	1438	broad.mit.edu	37	chrX	1407585	1407585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcactggccccaccacccCgccagcatcaaagtacatcc	6	20	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1407585	A	A	1407585	1	1	9	0	1	0	0	0	0	0	0	0	3968	667	23	1		1	CSF2RA	23	1407585	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	1085270	1407585	153862975	17751	25902											
CSF2RA	1438	broad.mit.edu	37	chrX	1409279	1409279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatacaagactcaggaaccCatgtgggatgtcacctggat	10	10	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1409279	A	A	1409279	3	1	9	1	0	0	0	0	1	0	0	0	3968	594	21	2	541	2	CSF2RA	23	1409279	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1694	1409279	153861281	17752	25903											
CSF2RA	1438	broad.mit.edu	37	chrX	1409342	1409342	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattactttctggttaacGgaaccagccgagaaattggc	10	9	1	1	rs137852353		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1409342	T	T	1409342	4	4	9	1	0	0	0	0	0	1	0	0	3968	1117	39	1	604	1	CSF2RA	23	1409342	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	63	1409342	153861218	17753	25904											
CSF2RA	1438	broad.mit.edu	37	chrX	1409386	1409386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattctttgattcacttttGgacacaaagaaaataggtga	7	6	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1409386	T	T	1409386	3	4	9	1	0	0	0	0	1	0	0	0	3968	1339	47	2	648	2	CSF2RA	23	1409386	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	44	1409386	153861174	17754	25905											
CSF2RA	1438	broad.mit.edu	37	chrX	1413249	1413249	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccctcccagcaatgtcacCgtacgttgcaacacgacgca	7	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1413249	A	A	1413249	2	1	9	1	0	0	0	0	0	0	0	1	3968	639	23	1		1	CSF2RA	23	1413249	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3863	1413249	153857311	17755	25906											
CSF2RA	1438	broad.mit.edu	37	chrX	1422896	1422896	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctgtggcatcgtcctcGgcttcctctttaaaaggtaa	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1422896	T	T	1422896	3	4	9	1	0	0	0	0	1	0	0	0	3968	1116	39	1	1167	1	CSF2RA	23	1422896	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	9647	1422896	153847664	17756	25907											
IL3RA	3563	broad.mit.edu	37	chrX	1464288	1464288	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttaacagaaatgtgacCgatatcgagtgtgttaaaga	10	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1464288	A	A	1464288	2	1	9	1	0	0	0	0	0	0	0	1	7765	639	23	1		1	IL3RA	23	1464288	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	41392	1464288	153806272	17757	25908											
IL3RA	3563	broad.mit.edu	37	chrX	1467351	1467351	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatagctattgccagtttGgagcaatttccttatgtgaa	8	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1467351	T	T	1467351	4	4	9	1	0	0	0	0	0	1	0	0	7765	1349	47	2	221	2	IL3RA	23	1467351	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3063	1467351	153803209	17758	25909											
IL3RA	3563	broad.mit.edu	37	chrX	1484094	1484094	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagtacaaataagagccCgggaaagagtgtatgaattc	10	7	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1484094	A	A	1484094	2	1	9	1	0	0	0	0	0	0	0	1	7765	643	23	1		1	IL3RA	23	1484094	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	16743	1484094	153786466	17759	25910											
SLC25A6	293	broad.mit.edu	37	chrX	1505553	1505553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaggcgccccccatgcccCgcaggacgttggaccacgca	12	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1505553	A	A	1505553	3	1	9	1	0	0	0	0	1	0	0	0	14627	652	23	1	61	1	SLC25A6	23	1505553	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21459	1505553	153765007	17760	25911											
ASMTL	8623	broad.mit.edu	37	chrX	1540695	1540695	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagagagtattcgccatcCgatgccaggtagacgttcgc	12	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1540695	A	A	1540695	2	1	9	1	0	0	0	0	0	0	0	1	1050	639	23	1		1	ASMTL	23	1540695	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	35142	1540695	153729865	17761	25912											
ASMTL	8623	broad.mit.edu	37	chrX	1546691	1546691	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaacggaggcagggtctccCgagtcctgtgacactcagcc	14	13	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1546691	G	G	1546691	3	3	9	1	0	0	0	0	1	0	0	0	1050	652	23	4	1060	4	ASMTL	23	1546691	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5996	1546691	153723869	17762	25913											
ASMTL	8623	broad.mit.edu	37	chrX	1558101	1558101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcacagagaagttttccCgtcggtacgggcgtgaaaga	13	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1558101	A	A	1558101	1	1	9	0	1	0	0	0	0	0	0	0	1050	667	23	1		1	ASMTL	23	1558101	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	11410	1558101	153712459	17763	25914											
SFRS17A	8227	broad.mit.edu	37	chrX	1712288	1712288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcccctcctcattggcGggggaggtggggggtgctgg	20	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1712288	T	T	1712288	1	4	9	0	1	0	0	0	0	0	0	0	14286	1131	39	1		1	SFRS17A	23	1712288	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	154187	1712288	153558272	17764	25915											
SFRS17A	8227	broad.mit.edu	37	chrX	1712433	1712433	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacggcttgtacctgaagccCatcaccaagatgaccatcag	8	13	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1712433	A	A	1712433	2	1	9	1	0	0	0	0	0	0	0	1	14286	581	21	2		2	SFRS17A	23	1712433	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	145	1712433	153558127	17765	25916											
SFRS17A	8227	broad.mit.edu	37	chrX	1712465	1712465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccatcagcgtggcactccCgcagctgaagcagccgggga	14	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1712465	A	A	1712465	3	1	9	1	0	0	0	0	1	0	0	0	14286	652	23	1	112	1	SFRS17A	23	1712465	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	32	1712465	153558095	17766	25917											
SFRS17A	8227	broad.mit.edu	37	chrX	1713019	1713019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaggcctatgtgcagtacCgcgagtacatgggcttcatc	12	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1713019	A	A	1713019	3	1	9	1	0	0	0	0	1	0	0	0	14286	652	23	1	666	1	SFRS17A	23	1713019	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	554	1713019	153557541	17767	25918											
SFRS17A	8227	broad.mit.edu	37	chrX	1714230	1714230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgcctggccgtgtgtctGgggggttttgggggaaggcc	22	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1714230	T	T	1714230	1	4	9	0	1	0	0	0	0	0	0	0	14286	1363	47	2		2	SFRS17A	23	1714230	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1211	1714230	153556330	17768	25919											
ASMT	438	broad.mit.edu	37	chrX	1746673	1746673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatctacaggtaacaccCatcactttgaaaccaacaac	5	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1746673	A	A	1746673	1	1	9	0	1	0	0	0	0	0	0	0	1049	609	21	2		2	ASMT	23	1746673	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	32443	1746673	153523887	17769	25920											
ASMT	438	broad.mit.edu	37	chrX	1748724	1748724	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcatgccaggtccgagggcGagcggctacagttcatgcaa	14	11	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1748724	C	C	1748724	3	2	9	1	0	0	0	0	1	0	0	0	1049	1059	37	4	472	4	ASMT	23	1748724	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2051	1748724	153521836	17770	25921											
DHRSX	207063	broad.mit.edu	37	chrX	2185060	2185060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctcacagatggattcccCagatgcgcaaatggcccagg	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2185060	A	A	2185060	1	1	9	0	1	0	0	0	0	0	0	0	4539	609	21	2		2	DHRSX	23	2185060	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	436336	2185060	153085500	17771	25922											
DHRSX	207063	broad.mit.edu	37	chrX	2343308	2343308	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgccatctgtccctccCgtcactatagcgacacggtc	7	17	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2343308	A	A	2343308	2	1	9	1	0	0	0	0	0	0	0	1	4539	639	23	1		1	DHRSX	23	2343308	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	158248	2343308	152927252	17772	25923											
ZBED1	9189	broad.mit.edu	37	chrX	2407329	2407329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggcagcctcttgtagcGggggtccaggaaggtggcca	18	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2407329	T	T	2407329	3	4	9	1	0	0	0	0	1	0	0	0	17644	1116	39	1	656	1	ZBED1	23	2407329	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	64021	2407329	152863231	17773	25924											
ZBED1	9189	broad.mit.edu	37	chrX	2407372	2407372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaaacatgtcgatctcGggcgtctcctggtaggtctt	12	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2407372	T	T	2407372	2	4	9	1	0	0	0	0	0	0	0	1	17644	1103	39	1		1	ZBED1	23	2407372	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	43	2407372	152863188	17774	25925											
ZBED1	9189	broad.mit.edu	37	chrX	2407965	2407965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatagttggtggtggcccCgaagaccttggcgctgatgc	15	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2407965	A	A	2407965	3	1	9	1	0	0	0	0	1	0	0	0	17644	652	23	1	1292	1	ZBED1	23	2407965	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	593	2407965	152862595	17775	25926											
ZBED1	9189	broad.mit.edu	37	chrX	2408229	2408229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcacctcccggacggcccCgtacttctcagggatggcct	11	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2408229	A	A	2408229	3	1	9	1	0	0	0	0	1	0	0	0	17644	652	23	1	1556	1	ZBED1	23	2408229	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	264	2408229	152862331	17776	25927											
ZBED1	9189	broad.mit.edu	37	chrX	2408240	2408240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacggccccgtacttctcaGggatggccttggtagagatg	15	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2408240	T	T	2408240	3	4	9	1	0	0	0	0	1	0	0	0	17644	1000	35	2	1567	2	ZBED1	23	2408240	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	11	2408240	152862320	17777	25928											
CD99	4267	broad.mit.edu	37	chrX	2632489	2632489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcgatttatccgatgccCttcctggtgagtatcaacat	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2632489	A	A	2632489	3	1	9	1	0	0	0	0	1	0	0	0	3080	681	24	2	100	2	CD99	23	2632489	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	224249	2632489	152638071	17778	25929											
CD99	4267	broad.mit.edu	37	chrX	2632525	2632525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatcattttttaaaatccCgtcaatattttatgttaaca	2	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2632525	A	A	2632525	1	1	9	0	1	0	0	0	0	0	0	0	3080	667	23	1		1	CD99	23	2632525	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	36	2632525	152638035	17779	25930											
CD99	4267	broad.mit.edu	37	chrX	2637673	2637673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtttctctctggaatttGgtattaactgctctttcccc	6	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2637673	T	T	2637673	1	4	9	0	1	0	0	0	0	0	0	0	3080	1363	47	2		2	CD99	23	2637673	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	5148	2637673	152632887	17780	25931											
CD99	4267	broad.mit.edu	37	chrX	2637826	2637827	+	Intron	DNP	CC	AA	AA													tcatttcagagagaattctcCcatttaaattataaagggaa							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2637827	AA	AA	2637826	1	1	9	0	1	0	0	0	0	0	0	0	3080	638	22	2		2	CD99	23	2637826	Intron	DNP	CC	TCGA-05-4396-01A-21D-1855-08	153	2637826	152632734	17781	25932											
XG	7499	broad.mit.edu	37	chrX	2670411	2670411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgagggagatctgcctGggcatggatttttctattct	12	7	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2670411	T	T	2670411	1	4	9	0	1	0	0	0	0	0	0	0	17554	1363	47	2		2	XG	23	2670411	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32585	2670411	152600149	17782	25933											
ARSH	347527	broad.mit.edu	37	chrX	2928087	2928087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcacacctaatattgacCgcctggcaagtgaaggagtg	12	10	0	2	rs143488630		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2928087	A	A	2928087	3	1	9	1	0	0	0	0	1	0	0	0	997	652	23	1	115	1	ARSH	23	2928087	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	257676	2928087	152342473	17783	25934											
ARSF	416	broad.mit.edu	37	chrX	3028308	3028308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgacagtgagtgctcaaccCgttgcttcctgttccctgcc	9	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3028308	A	A	3028308	1	1	9	0	1	0	0	0	0	0	0	0	995	667	23	1		1	ARSF	23	3028308	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	100221	3028308	152242252	17784	25935											
MXRA5	25878	broad.mit.edu	37	chrX	3229209	3229209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgttccggatggtggcGggcgctgtcaccaccttgac	14	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3229209	T	T	3229209	2	4	9	1	0	0	0	0	0	0	0	1	10097	1103	39	1		1	MXRA5	23	3229209	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	200901	3229209	152041351	17785	25936											
MXRA5	25878	broad.mit.edu	37	chrX	3238658	3238658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaattggtcagttcttcGgtcagtaaacttactaggaa	9	6	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3238658	T	T	3238658	2	4	9	1	0	0	0	0	0	0	0	1	10097	1124	39	1		1	MXRA5	23	3238658	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9449	3238658	152031902	17786	25937											
PRKX	5613	broad.mit.edu	37	chrX	3592654	3592654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacagcctgatgaggaacGggtggctgacttccttcagg	13	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3592654	T	T	3592654	3	4	9	1	0	0	0	0	1	0	0	0	12633	1116	39	1	784	1	PRKX	23	3592654	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	353996	3592654	151677906	17787	25938											
NLGN4X	57502	broad.mit.edu	37	chrX	5821843	5821843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccgagtgtacttggccggCtggtagttcactgcccagct	12	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5821843	A	A	5821843	3	1	9	1	0	0	0	0	1	0	0	0	10559	796	28	3	1582	3	NLGN4X	23	5821843	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2229189	5821843	149448717	17788	25939											
VCX3A	51481	broad.mit.edu	37	chrX	6451796	6451796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggccgtctacacactcGgtagttcttccatctcgctc	8	15	3	0	rs145354032		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6451796	T	T	6451796	3	4	9	1	0	0	0	0	1	0	0	0	17271	1116	39	1	13	1	VCX3A	23	6451796	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	629953	6451796	148818764	17789	25940											
STS	412	broad.mit.edu	37	chrX	7177611	7177611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgcactcaattgtctgGggctactccacgtgcctcta	9	13	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7177611	T	T	7177611	3	4	9	1	0	0	0	0	1	0	0	0	15450	1232	43	2	637	2	STS	23	7177611	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	725815	7177611	148092949	17790	25941											
FAM9B	171483	broad.mit.edu	37	chrX	9000488	9000488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcctcacattcatcacGgactggatcctttcctgcat	5	14	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9000488	T	T	9000488	3	4	9	1	0	0	0	0	1	0	0	0	5717	1116	39	1	541	1	FAM9B	23	9000488	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1822877	9000488	146270072	17791	25942											
TBL1X	6907	broad.mit.edu	37	chrX	9665400	9665400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactttttcctttgtttgcGgaacacagacaacaataatt	5	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9665400	T	T	9665400	1	4	9	0	1	0	0	0	0	0	0	0	15761	1131	39	1		1	TBL1X	23	9665400	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	664912	9665400	145605160	17792	25943											
GPR143	4935	broad.mit.edu	37	chrX	9711639	9711639	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgattttgaaaaatcGgatcttgatcacggctccca	8	10	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9711639	T	T	9711639	2	4	9	1	0	0	0	0	0	0	0	1	6716	1124	39	1		1	GPR143	23	9711639	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	46239	9711639	145558921	17793	25944											
WWC3	55841	broad.mit.edu	37	chrX	10090671	10090671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttacagcagtgactcttcGagaagacagtgccaagaggt	11	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10090671	T	T	10090671	3	4	9	1	0	0	0	0	1	0	0	0	17540	1058	37	3	1685	3	WWC3	23	10090671	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	379032	10090671	145179889	17794	25945											
WWC3	55841	broad.mit.edu	37	chrX	10094187	10094187	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgcccccactggactcGggcacgcccaacacttactg	8	16	0	0	rs144427491		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10094187	T	T	10094187	2	4	9	1	0	0	0	0	0	0	0	1	17540	1103	39	1		1	WWC3	23	10094187	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	3516	10094187	145176373	17795	25946											
CLCN4	1183	broad.mit.edu	37	chrX	10174864	10174864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattttgagcagcaaggccCgttgagggttagaatcaaag	13	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10174864	A	A	10174864	1	1	9	0	1	0	0	0	0	0	0	0	3496	667	23	1		1	CLCN4	23	10174864	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	80677	10174864	145095696	17796	25947											
MID1	4281	broad.mit.edu	37	chrX	10450525	10450525	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctgcactcacctctcGgtgatattcttagcagtctg	9	14	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10450525	T	T	10450525	2	4	9	1	0	0	0	0	0	0	0	1	9669	1103	39	1		1	MID1	23	10450525	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	275661	10450525	144820035	17797	25948											
ARHGAP6	395	broad.mit.edu	37	chrX	11243817	11243817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagcaacaaaagagacGgcaacaagatgggaaaggaa	12	6	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11243817	T	T	11243817	1	4	9	0	1	0	0	0	0	0	0	0	889	1131	39	1		1	ARHGAP6	23	11243817	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	793292	11243817	144026743	17798	25949											
MSL3	10943	broad.mit.edu	37	chrX	11777958	11777958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaaaaggcagaaagatccCagaatatctgatccatttta	7	8	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11777958	A	A	11777958	3	1	9	1	0	0	0	0	1	0	0	0	9973	594	21	2	155	2	MSL3	23	11777958	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	534141	11777958	143492602	17799	25950											
FRMPD4	9758	broad.mit.edu	37	chrX	12708373	12708373	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcattgaacacttctctctCatgctggagcagaggacaga	11	10	2	3	rs7049642	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12708373	A	A	12708373	2	1	9	1	0	0	0	0	0	0	0	1	6119	813	29	3		3	FRMPD4	23	12708373	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	930415	12708373	142562187	17800	25951											
FRMPD4	9758	broad.mit.edu	37	chrX	12728466	12728466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagctgttgacactccaGggatgttattaagaatggat	11	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12728466	T	T	12728466	1	4	9	0	1	0	0	0	0	0	0	0	6119	1015	35	2		2	FRMPD4	23	12728466	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	20093	12728466	142542094	17801	25952											
FRMPD4	9758	broad.mit.edu	37	chrX	12736647	12736647	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgcctgtgccacaccCgtggagtcgccgctctgccc	13	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12736647	A	A	12736647	2	1	9	1	0	0	0	0	0	0	0	1	6119	639	23	1		1	FRMPD4	23	12736647	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8181	12736647	142533913	17802	25953											
PRPS2	5634	broad.mit.edu	37	chrX	12817472	12817472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtaactgccgtgatccCgtgtttcccatacgcccgac	9	15	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12817472	A	A	12817472	3	1	9	1	0	0	0	0	1	0	0	0	12686	652	23	1	275	1	PRPS2	23	12817472	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	80825	12817472	142453088	17803	25954											
TLR8	51311	broad.mit.edu	37	chrX	12940182	12940182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagtggcctgacaaccCgaaggcagaaggcttgtttt	11	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12940182	A	A	12940182	3	1	9	1	0	0	0	0	1	0	0	0	16080	652	23	1	3029	1	TLR8	23	12940182	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122710	12940182	142330378	17804	25955											
ATXN3L	92552	broad.mit.edu	37	chrX	13337300	13337300	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaccttgcatgcttaactCaatagtactgcggagatgtt	8	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13337300	A	A	13337300	4	1	9	1	0	0	0	0	0	1	0	0	1218	835	29	3	317	3	ATXN3L	23	13337300	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	397118	13337300	141933260	17805	25956											
ATXN3L	92552	broad.mit.edu	37	chrX	13337312	13337312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttaactcaatagtactgcGgagatgttcatcttctctat	7	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13337312	T	T	13337312	3	4	9	1	0	0	0	0	1	0	0	0	1218	1116	39	1	329	1	ATXN3L	23	13337312	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12	13337312	141933248	17806	25957											
ATXN3L	92552	broad.mit.edu	37	chrX	13337357	13337357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggcggcttagttcaaGggccctctgaaaatcctcct	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13337357	T	T	13337357	3	4	9	1	0	0	0	0	1	0	0	0	1218	1000	35	2	374	2	ATXN3L	23	13337357	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	45	13337357	141933203	17807	25958											
EGFL6	25975	broad.mit.edu	37	chrX	13645270	13645270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggccggagacaaagtcGggaaacttcgagtgtttgtg	16	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645270	T	T	13645270	3	4	9	1	0	0	0	0	1	0	0	0	5003	1116	39	1	1471	1	EGFL6	23	13645270	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	307913	13645270	141625290	17808	25959											
GEMIN8	54960	broad.mit.edu	37	chrX	14038329	14038329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctttggacaaagcttGgtcttcttttgtggatgcct	9	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14038329	T	T	14038329	3	4	9	1	0	0	0	0	1	0	0	0	6398	1357	47	2	396	2	GEMIN8	23	14038329	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	393059	14038329	141232231	17809	25960											
ASB9	140462	broad.mit.edu	37	chrX	15272799	15272799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggaagttattcagaaGggatatacatagtcattttt	10	4	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15272799	T	T	15272799	1	4	9	0	1	0	0	0	0	0	0	0	1034	1015	35	2		2	ASB9	23	15272799	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1234470	15272799	139997761	17810	25961											
BMX	660	broad.mit.edu	37	chrX	15540461	15540461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtattaaaatttcttcccCtccaaagctgaagatacctc	4	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15540461	A	A	15540461	1	1	9	0	1	0	0	0	0	0	0	0	1479	696	24	2		2	BMX	23	15540461	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	267662	15540461	139730099	17811	25962											
BMX	660	broad.mit.edu	37	chrX	15540482	15540482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaagctgaagatacctcGggcagttcctgttctcaaaa	8	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15540482	T	T	15540482	3	4	9	1	0	0	0	0	1	0	0	0	1479	1116	39	1	546	1	BMX	23	15540482	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	21	15540482	139730078	17812	25963											
BMX	660	broad.mit.edu	37	chrX	15540535	15540535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaagtaccactctagccCaatatgacaacgaatcaaag	5	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15540535	A	A	15540535	3	1	9	1	0	0	0	0	1	0	0	0	1479	595	21	2	599	2	BMX	23	15540535	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	53	15540535	139730025	17813	25964											
BMX	660	broad.mit.edu	37	chrX	15560244	15560244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaggacttgaaccttccCagctcttagaaatgtgctac	8	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15560244	A	A	15560244	3	1	9	1	0	0	0	0	1	0	0	0	1479	595	21	2	1588	2	BMX	23	15560244	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	19709	15560244	139710316	17814	25965											
ACE2	59272	broad.mit.edu	37	chrX	15613072	15613072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgtagtggatacatttGggcaagtgtggactgttcct	12	6	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15613072	T	T	15613072	3	4	9	1	0	0	0	0	1	0	0	0	137	1357	47	2	2244	2	ACE2	23	15613072	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	52828	15613072	139657488	17815	25966											
GRPR	2925	broad.mit.edu	37	chrX	16170535	16170535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaccagcatctgtgccCgcctcctggccttcaccaac	7	18	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16170535	A	A	16170535	3	1	9	1	0	0	0	0	1	0	0	0	6874	652	23	1	932	1	GRPR	23	16170535	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	557463	16170535	139100025	17816	25967											
CTPS2	56474	broad.mit.edu	37	chrX	16669278	16669278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaaagtaagtggccatcCgcagagcccacttaatggga	10	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16669278	A	A	16669278	1	1	9	0	1	0	0	0	0	0	0	0	4057	667	23	1		1	CTPS2	23	16669278	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	498743	16669278	138601282	17817	25968											
CTPS2	56474	broad.mit.edu	37	chrX	16688680	16688680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctaataaactcatagttaGggtcaataaacatgagtttt	6	5	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16688680	T	T	16688680	1	4	9	0	1	0	0	0	0	0	0	0	4057	1015	35	2		2	CTPS2	23	16688680	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	19402	16688680	138581880	17818	25969											
REPS2	9185	broad.mit.edu	37	chrX	17024369	17024369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactgtgtggtgcaaagcGggttggttattttggtccaa	14	5	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17024369	T	T	17024369	3	4	9	1	0	0	0	0	1	0	0	0	13337	1116	39	1	305	1	REPS2	23	17024369	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	335689	17024369	138246191	17819	25970											
REPS2	9185	broad.mit.edu	37	chrX	17040179	17040179	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgattcatcgtttggccattGagttccccttttttgcagtt	8	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17040179	T	T	17040179	1	4	9	0	1	0	0	0	0	0	0	0	13337	1305	45	3		3	REPS2	23	17040179	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15810	17040179	138230381	17820	25971											
REPS2	9185	broad.mit.edu	37	chrX	17165588	17165588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaattggaacaacttcgtcCggtcactgtgttgtgacccc	9	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17165588	A	A	17165588	3	1	9	1	0	0	0	0	1	0	0	0	13337	652	23	1	2037	1	REPS2	23	17165588	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	125409	17165588	138104972	17821	25972											
BEND2	139105	broad.mit.edu	37	chrX	18194094	18194094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatgaaaaataacttactgGagtactcttgccttcagaac	7	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18194094	T	T	18194094	3	4	9	1	0	0	0	0	1	0	0	0	1403	1174	41	3	691	3	BEND2	23	18194094	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1028506	18194094	137076466	17822	25973											
BEND2	139105	broad.mit.edu	37	chrX	18195712	18195712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgcagccattttgttcGggtcgagggattggctgtct	13	8	2	0	rs139599869		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18195712	T	T	18195712	3	4	9	1	0	0	0	0	1	0	0	0	1403	1116	39	1	838	1	BEND2	23	18195712	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1618	18195712	137074848	17823	25974											
BEND2	139105	broad.mit.edu	37	chrX	18222009	18222009	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggtttcctgcctttcCgctggtggtgatatgctaga	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18222009	A	A	18222009	2	1	9	1	0	0	0	0	0	0	0	1	1403	639	23	1		1	BEND2	23	18222009	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	26297	18222009	137048551	17824	25975											
CDKL5	6792	broad.mit.edu	37	chrX	18606110	18606110	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtggacatgtggtcggtGggctgtattcttggggagct	17	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18606110	T	T	18606110	2	4	9	1	0	0	0	0	0	0	0	1	3187	1335	47	2		2	CDKL5	23	18606110	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	384101	18606110	136664450	17825	25976											
CDKL5	6792	broad.mit.edu	37	chrX	18668711	18668711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcccaacccagcaatcCggtaagcagagactctagac	9	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18668711	A	A	18668711	2	1	9	1	0	0	0	0	0	0	0	1	3187	666	23	1		1	CDKL5	23	18668711	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	62601	18668711	136601849	17826	25977											
PPEF1	5475	broad.mit.edu	37	chrX	18767958	18767958	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggacatgagggatagatGggattatgtggactcgatag	15	4	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18767958	T	T	18767958	3	4	9	1	0	0	0	0	1	0	0	0	12403	1357	47	2	298	2	PPEF1	23	18767958	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	99247	18767958	136502602	17827	25978											
PPEF1	5475	broad.mit.edu	37	chrX	18797153	18797153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccctcagagaggaaccCgtatgtttttaatggtgact	9	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18797153	A	A	18797153	3	1	9	1	0	0	0	0	1	0	0	0	12403	652	23	1	610	1	PPEF1	23	18797153	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	29195	18797153	136473407	17828	25979											
PHKA2	5256	broad.mit.edu	37	chrX	18924584	18924584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttggggtggggtgcggcGggagctgcaggagctgcggg	25	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18924584	T	T	18924584	1	4	9	0	1	0	0	0	0	0	0	0	11939	1131	39	1		1	PHKA2	23	18924584	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	127431	18924584	136345976	17829	25980											
PHKA2	5256	broad.mit.edu	37	chrX	18936846	18936846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcacagaaagtatgtccCgcgtggagtggatagcactg	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18936846	A	A	18936846	3	1	9	1	0	0	0	0	1	0	0	0	11939	652	23	1	1677	1	PHKA2	23	18936846	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	12262	18936846	136333714	17830	25981											
PHKA2	5256	broad.mit.edu	37	chrX	18958167	18958167	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacagcatccataacgcccCtaataagagaaagtacattc	6	12	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18958167	A	A	18958167	5	1	9	1	0	0	0	0	0	0	1	0	11939	695	24	2	2943	2	PHKA2	23	18958167	Splice_Site	SNP	C	TCGA-05-4396-01A-21D-1855-08	21321	18958167	136312393	17831	25982											
GPR64	10149	broad.mit.edu	37	chrX	19049199	19049199	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttaagcatgtcaatgccCgtgtttatgtgctgcattgt	11	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19049199	A	A	19049199	1	1	9	0	1	0	0	0	0	0	0	0	6770	667	23	1		1	GPR64	23	19049199	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	91032	19049199	136221361	17832	25983											
MAP3K15	389840	broad.mit.edu	37	chrX	19379682	19379682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttatctgttctctgccCgtaggggcctgctgggttct	11	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19379682	A	A	19379682	3	1	9	1	0	0	0	0	1	0	0	0	9341	652	23	1	244	1	MAP3K15	23	19379682	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	330483	19379682	135890878	17833	25984											
SH3KBP1	30011	broad.mit.edu	37	chrX	19817689	19817689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggcctacaaagtagtcGggcaacaggctacaaaagat	10	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19817689	T	T	19817689	1	4	9	0	1	0	0	0	0	0	0	0	14368	1131	39	1		1	SH3KBP1	23	19817689	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	438007	19817689	135452871	17834	25985											
CXorf23	256643	broad.mit.edu	37	chrX	19953943	19953943	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataccttaaaaggtcttactCttgtgtttcggtggtttccc	8	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19953943	A	A	19953943	3	1	9	1	0	0	0	0	1	0	0	0	4136	913	32	3	213	3	CXorf23	23	19953943	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	136254	19953943	135316617	17835	25986											
CXorf23	256643	broad.mit.edu	37	chrX	19971147	19971147	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcttgtttactctgaagctCggccaaagacatatctattc	7	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19971147	A	A	19971147	4	1	9	1	0	0	0	0	0	1	0	0	4136	893	31	3	484	3	CXorf23	23	19971147	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17204	19971147	135299413	17836	25987											
CXorf23	256643	broad.mit.edu	37	chrX	19984671	19984671	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccattctccacgcgacGggtctttttggatccttcct	8	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19984671	T	T	19984671	2	4	9	1	0	0	0	0	0	0	0	1	4136	1103	39	1		1	CXorf23	23	19984671	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	13524	19984671	135285889	17837	25988											
MAP7D2	256714	broad.mit.edu	37	chrX	20029069	20029069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaagagatcttgaagtgctCgggcattaccagttccattt	9	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20029069	A	A	20029069	3	1	9	1	0	0	0	0	1	0	0	0	9360	884	31	3	151	3	MAP7D2	23	20029069	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44398	20029069	135241491	17838	25989											
MAP7D2	256714	broad.mit.edu	37	chrX	20031233	20031233	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacagcaggctggaccccCactttggggtcttctttctg	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20031233	A	A	20031233	2	1	9	1	0	0	0	0	0	0	0	1	9360	581	21	2		2	MAP7D2	23	20031233	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2164	20031233	135239327	17839	25990											
MAP7D2	256714	broad.mit.edu	37	chrX	20043894	20043894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagggcttcctctccttgcGggccagcagcctgctgagcc	12	16	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043894	T	T	20043894	3	4	9	1	0	0	0	0	1	0	0	0	9360	1116	39	1	1169	1	MAP7D2	23	20043894	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12661	20043894	135226666	17840	25991											
MAP7D2	256714	broad.mit.edu	37	chrX	20060690	20060690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcttctcagaggggaccCgaagttcacaacaggaagag	11	10	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20060690	A	A	20060690	3	1	9	1	0	0	0	0	1	0	0	0	9360	652	23	1	1420	1	MAP7D2	23	20060690	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	16796	20060690	135209870	17841	25992											
RPS6KA3	6197	broad.mit.edu	37	chrX	20194426	20194426	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtatcttcaggcctgccCgttgcaggtttaaatggcgg	12	9	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20194426	A	A	20194426	2	1	9	1	0	0	0	0	0	0	0	1	13763	639	23	1		1	RPS6KA3	23	20194426	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	133736	20194426	135076134	17842	25993											
CNKSR2	22866	broad.mit.edu	37	chrX	21450881	21450881	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaaacgactttctgacctCagttgtggatctgattggag	11	9	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21450881	A	A	21450881	4	1	9	1	0	0	0	0	0	1	0	0	3639	838	29	3	390	3	CNKSR2	23	21450881	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1256455	21450881	133819679	17843	25994											
CNKSR2	22866	broad.mit.edu	37	chrX	21581568	21581568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagagaccacactatacCatgtaagtaaaatttcaaag	6	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21581568	A	A	21581568	3	1	9	1	0	0	0	0	1	0	0	0	3639	594	21	2	1656	2	CNKSR2	23	21581568	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	130687	21581568	133688992	17844	25995											
YY2	404281	broad.mit.edu	37	chrX	21875399	21875399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgcgaaaagatgttccGggattacgccgccatgagaa	13	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21875399	T	T	21875399	3	4	9	1	0	0	0	0	1	0	0	0	17636	1116	39	1	799	1	YY2	23	21875399	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	293831	21875399	133395161	17845	25996											
YY2	404281	broad.mit.edu	37	chrX	21875557	21875557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcacattcgaaggctgcGggaaacgcttttcccttgat	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21875557	T	T	21875557	3	4	9	1	0	0	0	0	1	0	0	0	17636	1116	39	1	957	1	YY2	23	21875557	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	158	21875557	133395003	17846	25997											
YY2	404281	broad.mit.edu	37	chrX	21875572	21875572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcgggaaacgcttttccCttgatttcaatttgcgcaca	9	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21875572	A	A	21875572	3	1	9	1	0	0	0	0	1	0	0	0	17636	681	24	2	972	2	YY2	23	21875572	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15	21875572	133394988	17847	25998											
PHEX	5251	broad.mit.edu	37	chrX	22095661	22095661	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcacctttccgctggccCgtgcttgaatctaatattgg	8	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22095661	A	A	22095661	2	1	9	1	0	0	0	0	0	0	0	1	11914	639	23	1		1	PHEX	23	22095661	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	220089	22095661	133174899	17848	25999											
ZFX	7543	broad.mit.edu	37	chrX	24197511	24197511	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcagatgtgtctgaaacGgtcatcattcctgagcaagt	11	8	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24197511	T	T	24197511	2	4	9	1	0	0	0	0	0	0	0	1	17787	1103	39	1		1	ZFX	23	24197511	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2101850	24197511	131073049	17849	26000											
POLA1	5422	broad.mit.edu	37	chrX	24741376	24741376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacgctttacttccttcccCgtgaaatggtaaacattagt	7	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24741376	A	A	24741376	3	1	9	1	0	0	0	0	1	0	0	0	12282	652	23	1	1216	1	POLA1	23	24741376	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	543865	24741376	130529184	17850	26001											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997832	27997832	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcggttgtcaaacgagtcCgtatagttcaagttgtcttc	10	8	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27997832	A	A	27997832	2	1	9	1	0	0	0	0	0	0	0	1	4310	639	23	1		1	DCAF8L1	23	27997832	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3256456	27997832	127272728	17851	26002											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998106	27998106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcacgacaaactcactcCgggggccatagaaattaaca	8	13	2	1	rs138650117		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27998106	A	A	27998106	3	1	9	1	0	0	0	0	1	0	0	0	4310	652	23	1	460	1	DCAF8L1	23	27998106	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	274	27998106	127272454	17852	26003											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998808	27998808	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatcacccttaagtcatcaCcgctactggccagtcgggtg	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27998808	T	T	27998808	3	4	9	1	0	0	0	0	1	0	0	0	4310	507	18	4	1162	4	DCAF8L1	23	27998808	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	702	27998808	127271752	17853	26004											
DCAF8L1	139425	broad.mit.edu	37	chrX	27999177	27999177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctcctctcccactaacGggtaaccaaataaaccttca	4	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27999177	T	T	27999177	3	4	9	1	0	0	0	0	1	0	0	0	4310	1116	39	1	1531	1	DCAF8L1	23	27999177	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	369	27999177	127271383	17854	26005											
NR0B1	190	broad.mit.edu	37	chrX	30326315	30326315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggccagtacccttacccGggttaaagagcacggtcccc	10	14	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30326315	T	T	30326315	3	4	9	1	0	0	0	0	1	0	0	0	10708	1116	39	1	254	1	NR0B1	23	30326315	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2327138	30326315	124944245	17855	26006											
DMD	1756	broad.mit.edu	37	chrX	31525419	31525419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgttgagagactttttcCgaagttcactccacttgaag	8	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31525419	A	A	31525419	3	1	9	1	0	0	0	0	1	0	0	0	4620	652	23	1	2898	1	DMD	23	31525419	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1199104	31525419	123745141	17856	26007											
DMD	1756	broad.mit.edu	37	chrX	31854904	31854904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaaatctcttccacatcCggttgtttagcttgaactgc	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31854904	A	A	31854904	2	1	9	1	0	0	0	0	0	0	0	1	4620	639	23	1		1	DMD	23	31854904	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	329485	31854904	123415656	17857	26008											
DMD	1756	broad.mit.edu	37	chrX	32364033	32364033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaaaaaccacaggcaaGgtatattataattttagctc	5	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32364033	T	T	32364033	1	4	9	0	1	0	0	0	0	0	0	0	4620	1015	35	2		2	DMD	23	32364033	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	509129	32364033	122906527	17858	26009											
DMD	1756	broad.mit.edu	37	chrX	32459326	32459326	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagagatttcctcagctcCgccaggaatgttttcagtgg	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32459326	A	A	32459326	4	1	9	1	0	0	0	0	0	1	0	0	4620	661	23	1	7616	1	DMD	23	32459326	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	95293	32459326	122811234	17859	26010											
FAM47A	158724	broad.mit.edu	37	chrX	34147941	34147941	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaagttgtgcatccacgGggccagtcatcataaattat	9	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34147941	T	T	34147941	1	4	9	0	1	0	0	0	0	0	0	0	5620	1247	43	2		2	FAM47A	23	34147941	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1688615	34147941	121122619	17860	26011											
CXorf22	170063	broad.mit.edu	37	chrX	35993967	35993967	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgtcagaattgttgtgctCagtttcaatggcaacccgta	9	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35993967	A	A	35993967	3	1	9	1	0	0	0	0	1	0	0	0	4135	827	29	3	2708	3	CXorf22	23	35993967	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1846026	35993967	119276593	17861	26012											
FAM47C	442444	broad.mit.edu	37	chrX	37029406	37029406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaacccgacattcttgacGgtctttatggaccaatcgcc	8	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37029406	T	T	37029406	3	4	9	1	0	0	0	0	1	0	0	0	5622	1116	39	1	2925	1	FAM47C	23	37029406	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1035439	37029406	118241154	17862	26013											
SYTL5	94122	broad.mit.edu	37	chrX	37984777	37984777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgagggatttggggacCcacagggatggtctgtgact	18	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37984777	A	A	37984777	1	1	9	0	1	0	0	0	0	0	0	0	15605	638	22	2		2	SYTL5	23	37984777	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	955371	37984777	117285783	17863	26014											
ATP6AP2	10159	broad.mit.edu	37	chrX	40450542	40450542	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatcgtcctcgggctacCgtcatggtgatggtgaaggg	14	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40450542	A	A	40450542	2	1	9	1	0	0	0	0	0	0	0	1	1171	639	23	1		1	ATP6AP2	23	40450542	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	2465765	40450542	114820018	17864	26015											
USP9X	8239	broad.mit.edu	37	chrX	41025463	41025463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataggattagattacctttGgagggtaagtcaaaagtagg	12	3	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41025463	T	T	41025463	3	4	9	1	0	0	0	0	1	0	0	0	17217	1357	47	2	2382	2	USP9X	23	41025463	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	574921	41025463	114245097	17865	26016											
CASK	8573	broad.mit.edu	37	chrX	41390310	41390310	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgctcgtggatcttccGgatggtctccagttttgtcc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41390310	T	T	41390310	2	4	9	1	0	0	0	0	0	0	0	1	2691	1115	39	1		1	CASK	23	41390310	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	364847	41390310	113880250	17866	26017											
RP2	6102	broad.mit.edu	37	chrX	46713093	46713093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcataatttttctgggaccCgtgaaaggcagcgtgttttt	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46713093	A	A	46713093	2	1	9	1	0	0	0	0	0	0	0	1	13645	639	23	1		1	RP2	23	46713093	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	5322783	46713093	108557467	17867	26018											
UBA1	7317	broad.mit.edu	37	chrX	47062493	47062493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcattggggacatttctGgggaggcctctctaaccctc	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47062493	T	T	47062493	1	4	9	0	1	0	0	0	0	0	0	0	16953	1363	47	2		2	UBA1	23	47062493	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	349400	47062493	108208067	17868	26019											
ZNF41	7592	broad.mit.edu	37	chrX	47308274	47308274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcttttgtcacattcacGggacttttctccagcatgaa	8	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47308274	T	T	47308274	3	4	9	1	0	0	0	0	1	0	0	0	18016	1116	39	1	1448	1	ZNF41	23	47308274	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	245781	47308274	107962286	17869	26020											
ZNF182	7569	broad.mit.edu	37	chrX	47836295	47836295	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttatgaggtttctctccCgtatgagttctctggtgtat	9	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47836295	A	A	47836295	2	1	9	1	0	0	0	0	0	0	0	1	17876	639	23	1		1	ZNF182	23	47836295	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	528021	47836295	107434265	17870	26021											
ZNF630	57232	broad.mit.edu	37	chrX	47919831	47919831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccaattctcacttacctGggtagatccaccttgacaac	5	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47919831	T	T	47919831	3	4	9	1	0	0	0	0	1	0	0	0	18181	1348	47	2	1745	2	ZNF630	23	47919831	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	83536	47919831	107350729	17871	26022											
SSX5	6758	broad.mit.edu	37	chrX	48051672	48051672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagagacactcaccttcGggaagattccctggagcctg	11	11	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48051672	T	T	48051672	3	4	9	1	0	0	0	0	1	0	0	0	15326	1116	39	1	252	1	SSX5	23	48051672	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	131841	48051672	107218888	17872	26023											
SSX5	6758	broad.mit.edu	37	chrX	48053621	48053621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctggaagtctgcgaccCgtttattacgcatgaaaggt	10	11	1	1	rs139280367		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48053621	A	A	48053621	3	1	9	1	0	0	0	0	1	0	0	0	15326	652	23	1	358	1	SSX5	23	48053621	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1949	48053621	107216939	17873	26024											
SSX5	6758	broad.mit.edu	37	chrX	48054801	48054801	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtctccgttcatggcaccGggagcactctgtcctacaag	10	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48054801	T	T	48054801	1	4	9	0	1	0	0	0	0	0	0	0	15326	1131	39	1		1	SSX5	23	48054801	5'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	1180	48054801	107215759	17874	26025											
SSX1	6756	broad.mit.edu	37	chrX	48121246	48121246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctccacagaatcatccCgaaggtgagtatctctcaaa	8	12	3	2	rs139195586		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48121246	A	A	48121246	3	1	9	1	0	0	0	0	1	0	0	0	15321	652	23	1	340	1	SSX1	23	48121246	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	66445	48121246	107149314	17875	26026											
SSX3	10214	broad.mit.edu	37	chrX	48209463	48209463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtagttggttttcccGgggggcacagctgtttccca	14	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48209463	T	T	48209463	3	4	9	1	0	0	0	0	1	0	0	0	15323	1116	39	1	200	1	SSX3	23	48209463	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	88217	48209463	107061097	17876	26027											
SSX3	10214	broad.mit.edu	37	chrX	48211539	48211539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaaagatactcaccttcGggaagattccctggagcctg	10	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48211539	T	T	48211539	3	4	9	1	0	0	0	0	1	0	0	0	15323	1116	39	1	303	1	SSX3	23	48211539	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2076	48211539	107059021	17877	26028											
SLC38A5	92745	broad.mit.edu	37	chrX	48319137	48319137	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacatgtgcagcatctcCgccttcacactgcctgggcc	9	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48319137	A	A	48319137	2	1	9	1	0	0	0	0	0	0	0	1	14721	639	23	1		1	SLC38A5	23	48319137	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	107598	48319137	106951423	17878	26029											
HDAC6	10013	broad.mit.edu	37	chrX	48673017	48673017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaagtgaggcccagcccCgcccttctgtcagcggctcg	11	18	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48673017	A	A	48673017	1	1	9	0	1	0	0	0	0	0	0	0	7078	667	23	1		1	HDAC6	23	48673017	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	353880	48673017	106597543	17879	26030											
SLC35A2	7355	broad.mit.edu	37	chrX	48762294	48762294	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagggaggtggcaaagcCcttgaggatattgtcagcgt	16	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48762294	A	A	48762294	3	1	9	1	0	0	0	0	1	0	0	0	14685	623	22	2	462	2	SLC35A2	23	48762294	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	89277	48762294	106508266	17880	26031											
OTUD5	55593	broad.mit.edu	37	chrX	48792204	48792204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcccaccctgccccttcCccaaaggcctccattttctc	3	22	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48792204	A	A	48792204	1	1	9	0	1	0	0	0	0	0	0	0	11409	638	22	2		2	OTUD5	23	48792204	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	29910	48792204	106478356	17881	26032											
OTUD5	55593	broad.mit.edu	37	chrX	48801459	48801459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagactcacctacagccCggaagagacaggcgccatcc	11	15	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48801459	A	A	48801459	3	1	9	1	0	0	0	0	1	0	0	0	11409	652	23	1	1067	1	OTUD5	23	48801459	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9255	48801459	106469101	17882	26033											
GRIPAP1	56850	broad.mit.edu	37	chrX	48846096	48846096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtgatcagcttccttcCgttgttgtaattcctcaatc	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48846096	A	A	48846096	3	1	9	1	0	0	0	0	1	0	0	0	6855	652	23	1	1846	1	GRIPAP1	23	48846096	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	44637	48846096	106424464	17883	26034											
PLP2	5355	broad.mit.edu	37	chrX	49029744	49029744	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacctcacaggatttcttcCgaaccctcatagcggcaatc	6	15	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49029744	A	A	49029744	2	1	9	1	0	0	0	0	0	0	0	1	12200	644	23	1		1	PLP2	23	49029744	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	183648	49029744	106240816	17884	26035											
SHROOM4	57477	broad.mit.edu	37	chrX	50341370	50341370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccactttgtccaggtcccCaacaaacaagtggtactttt	7	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50341370	A	A	50341370	3	1	9	1	0	0	0	0	1	0	0	0	14409	594	21	2	381	2	SHROOM4	23	50341370	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1311626	50341370	104929190	17885	26036											
SHROOM4	57477	broad.mit.edu	37	chrX	50377749	50377749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagagtccactggtgccCatcctgtacgggtgggagct	15	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50377749	A	A	50377749	3	1	9	1	0	0	0	0	1	0	0	0	14409	594	21	2	3181	2	SHROOM4	23	50377749	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	36379	50377749	104892811	17886	26037											
BMP15	9210	broad.mit.edu	37	chrX	50659342	50659342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttccgccagctgggttGggatcactggatcattgctc	12	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50659342	T	T	50659342	3	4	9	1	0	0	0	0	1	0	0	0	1464	1357	47	2	920	2	BMP15	23	50659342	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	281593	50659342	104611218	17887	26038											
SSX7	280658	broad.mit.edu	37	chrX	52681260	52681260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgagctgaaaagcagctGggcttgaggagaccctttcc	13	10	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52681260	T	T	52681260	1	4	9	0	1	0	0	0	0	0	0	0	15327	1363	47	2		2	SSX7	23	52681260	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	2021918	52681260	102589300	17888	26039											
SSX7	280658	broad.mit.edu	37	chrX	52681320	52681320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgattcccttggttacGgtcattatcaaaatcattcc	5	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52681320	T	T	52681320	3	4	9	1	0	0	0	0	1	0	0	0	15327	1116	39	1	320	1	SSX7	23	52681320	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	60	52681320	102589240	17889	26040											
SSX7	280658	broad.mit.edu	37	chrX	52682516	52682516	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcaaaggcgtcgtctcCgttcatggcaccaggagcag	12	13	2	0	rs139777180		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52682516	A	A	52682516	4	1	9	1	0	0	0	0	0	1	0	0	15327	661	23	1	583	1	SSX7	23	52682516	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1196	52682516	102588044	17890	26041											
SPANXN5	494197	broad.mit.edu	37	chrX	52825545	52825545	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctcaggactggtcattctCcagttgatttgaatgtattt	8	8	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52825545	A	A	52825545	4	1	9	1	0	0	0	0	0	1	0	0	15110	864	30	3	20	3	SPANXN5	23	52825545	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	143029	52825545	102445015	17891	26042											
KDM5C	8242	broad.mit.edu	37	chrX	53227964	53227964	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgcgcttccgcccatcctCcacctccagggccactcgca	7	21	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53227964	A	A	53227964	4	1	9	1	0	0	0	0	0	1	0	0	8205	864	30	3	2474	3	KDM5C	23	53227964	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	402419	53227964	102042596	17892	26043											
SMC1A	8243	broad.mit.edu	37	chrX	53438730	53438730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtctctactttcttcCgttcttccagatccagacgg	6	15	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53438730	A	A	53438730	3	1	9	1	0	0	0	0	1	0	0	0	14895	652	23	1	2542	1	SMC1A	23	53438730	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	210766	53438730	101831830	17893	26044											
HUWE1	10075	broad.mit.edu	37	chrX	53576156	53576156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagcaggtccaggggacGgttctcatggctacttgacc	14	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53576156	T	T	53576156	3	4	9	1	0	0	0	0	1	0	0	0	7531	1116	39	1	3397	1	HUWE1	23	53576156	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	137426	53576156	101694404	17894	26045											
HUWE1	10075	broad.mit.edu	37	chrX	53579532	53579532	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcatgtccattagttgacGagtatgaaatgtgctttgaa	10	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53579532	T	T	53579532	1	4	9	0	1	0	0	0	0	0	0	0	7531	1073	37	3		3	HUWE1	23	53579532	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	3376	53579532	101691028	17895	26046											
ZXDB	158586	broad.mit.edu	37	chrX	57620752	57620752	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctactgacaccaaccaaagcGgagtggaacgtacatcctga	9	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57620752	C	C	57620752	2	2	9	1	0	0	0	0	0	0	0	1	18380	1103	39	4		4	ZXDB	23	57620752	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	4041220	57620752	97649808	17896	26047											
ARHGEF9	23229	broad.mit.edu	37	chrX	62875607	62875607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtacaggatgtctctcCggattaggtcctagatggga	13	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62875607	A	A	62875607	3	1	9	1	0	0	0	0	1	0	0	0	914	652	23	1	495	1	ARHGEF9	23	62875607	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5254855	62875607	92394953	17897	26048											
FAM123B	139285	broad.mit.edu	37	chrX	63411678	63411678	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccactgtagctgtctcGgggtagacaatccctgcgga	11	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63411678	T	T	63411678	2	4	9	1	0	0	0	0	0	0	0	1	5469	1124	39	1		1	FAM123B	23	63411678	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	536071	63411678	91858882	17898	26049											
FAM123B	139285	broad.mit.edu	37	chrX	63411863	63411863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtcaaggagcatgtagCcgtggtggcctggggatgtg	19	7	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63411863	A	A	63411863	3	1	9	1	0	0	0	0	1	0	0	0	5469	739	26	3	2107	3	FAM123B	23	63411863	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	185	63411863	91858697	17899	26050											
FAM123B	139285	broad.mit.edu	37	chrX	63411938	63411938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacatttgggcagtttccCacagatattctaagtcatca	7	9	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63411938	A	A	63411938	3	1	9	1	0	0	0	0	1	0	0	0	5469	595	21	2	2182	2	FAM123B	23	63411938	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	75	63411938	91858622	17900	26051											
ZC3H12B	340554	broad.mit.edu	37	chrX	64718935	64718935	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgtcttcacaccatccCgaagagtccaaggcaggagg	10	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64718935	A	A	64718935	2	1	9	1	0	0	0	0	0	0	0	1	17688	644	23	1		1	ZC3H12B	23	64718935	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1306997	64718935	90551625	17901	26052											
MSN	4478	broad.mit.edu	37	chrX	64949377	64949377	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaccctgaggatgtgtcCgaggaattgattcaggacat	11	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64949377	A	A	64949377	2	1	9	1	0	0	0	0	0	0	0	1	9979	639	23	1		1	MSN	23	64949377	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	230442	64949377	90321183	17902	26053											
HEPH	9843	broad.mit.edu	37	chrX	65412096	65412096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgggactatggcccgatGgggcatgatgggagtactgg	17	7	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65412096	T	T	65412096	3	4	9	1	0	0	0	0	1	0	0	0	7121	1348	47	2	1376	2	HEPH	23	65412096	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	462719	65412096	89858464	17903	26054											
AR	367	broad.mit.edu	37	chrX	66765032	66765032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggtctaccctcggccgcCgtccaagacctaccgaggag	12	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66765032	A	A	66765032	3	1	9	1	0	0	0	0	1	0	0	0	838	652	23	1	46	1	AR	23	66765032	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1352936	66765032	88505528	17904	26055											
OPHN1	4983	broad.mit.edu	37	chrX	67290431	67290431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctaaactggcaccaccCgtagtgctcacatgtctgat	8	13	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67290431	A	A	67290431	1	1	9	0	1	0	0	0	0	0	0	0	10969	667	23	1		1	OPHN1	23	67290431	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	525399	67290431	87980129	17905	26056											
OPHN1	4983	broad.mit.edu	37	chrX	67290512	67290512	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccaccacctatgatggtAatgcagcccctagaagtggc	9	12	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67290512	G	G	67290512	1	3	9	0	1	0	0	0	0	0	0	0	10969	377	13	5		5	OPHN1	23	67290512	Intron	SNP	A	TCGA-05-4396-01A-21D-1855-08	81	67290512	87980048	17906	26057											
STARD8	9754	broad.mit.edu	37	chrX	67940902	67940902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctaaagcagtatttccGggacctgcctgagcccatct	9	14	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67940902	T	T	67940902	3	4	9	1	0	0	0	0	1	0	0	0	15381	1116	39	1	2220	1	STARD8	23	67940902	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	650390	67940902	87329658	17907	26058											
KIF4A	24137	broad.mit.edu	37	chrX	69625732	69625732	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaatcagcagcttctcCgagagaatgaaatcatcaag	8	9	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69625732	A	A	69625732	2	1	9	1	0	0	0	0	0	0	0	1	8373	644	23	1		1	KIF4A	23	69625732	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1684830	69625732	85644828	17908	26059											
TAF1	6872	broad.mit.edu	37	chrX	70678120	70678120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtatgataccaacacatcCctcagtatgtctcgagatgc	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70678120	A	A	70678120	2	1	9	1	0	0	0	0	0	0	0	1	15632	610	22	2		2	TAF1	23	70678120	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1052388	70678120	84592440	17909	26060											
ACRC	93953	broad.mit.edu	37	chrX	70823574	70823574	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgattcagaagctccCgacgacaacagtgatgattc	10	9	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823574	A	A	70823574	2	1	9	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70823574	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	145454	70823574	84446986	17910	26061			22	25		7	7	529	C		8.672245e-07
ACRC	93953	broad.mit.edu	37	chrX	70823742	70823742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaacagtgatgattcatcCgacgacaacagtgatgattc	9	9	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823742	A	A	70823742	2	1	9	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70823742	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	168	70823742	84446818	17911	26062			22	25		7	7	529	C		8.672245e-07
ACRC	93953	broad.mit.edu	37	chrX	70823832	70823832	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgattcggatgttccCgacgacagcagtgatgattc	12	8	0	4	rs138010303	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823832	A	A	70823832	2	1	9	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70823832	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	90	70823832	84446728	17912	26063			22	25		7	7	529	C		8.672245e-07
ACRC	93953	broad.mit.edu	37	chrX	70823862	70823862	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgattcggaagctccCgacgacagcagtgatgattc	12	9	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823862	A	A	70823862	2	1	9	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70823862	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	70823862	84446698	17913	26064			22	25		7	7	529	C		8.672245e-07
ACRC	93953	broad.mit.edu	37	chrX	70824042	70824042	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgattcggaagctccCgacgacaagagtgatgattc	12	8	0	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70824042	A	A	70824042	2	1	9	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70824042	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	180	70824042	84446518	17914	26065			22	25		7	7	529	C		8.672245e-07
ACRC	93953	broad.mit.edu	37	chrX	70824072	70824072	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgattcggatgttccCgaagacaagagtgatgattc	12	6	0	6	rs147470042		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70824072	A	A	70824072	2	1	9	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70824072	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	70824072	84446488	17915	26066			22	25		7	7	529	C		8.672245e-07
ACRC	93953	broad.mit.edu	37	chrX	70824102	70824102	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgattcggatgttccCgatgacaatagtgatgattt	11	5	0	5	rs145146238	byFrequency;by1000genomes	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70824102	A	A	70824102	2	1	9	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70824102	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	30	70824102	84446458	17916	26067			22	25		7	7	529	C		8.672245e-07
RGAG4	340526	broad.mit.edu	37	chrX	71350591	71350591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggaggcggcagtcatccCaagacaagaattgggccagg	14	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71350591	A	A	71350591	3	1	9	1	0	0	0	0	1	0	0	0	13383	595	21	2	913	2	RGAG4	23	71350591	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	526489	71350591	83919969	17917	26068											
NHSL2	340527	broad.mit.edu	37	chrX	71360536	71360536	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagacaccaagtgtccCgccaccggcgatgacctgca	12	14	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71360536	A	A	71360536	2	1	9	1	0	0	0	0	0	0	0	1	10507	639	23	1		1	NHSL2	23	71360536	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	9945	71360536	83910024	17918	26069											
HDAC8	55869	broad.mit.edu	37	chrX	71681892	71681892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggatagtgttttccctaGgatgaccccggtcaagtatg	12	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71681892	T	T	71681892	3	4	9	1	0	0	0	0	1	0	0	0	7080	991	35	2	178	2	HDAC8	23	71681892	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	321356	71681892	83588668	17919	26070											
KIAA2022	340533	broad.mit.edu	37	chrX	73960673	73960674	+	Missense_Mutation	DNP	CC	AA	AA													ggcttcccccacggccaatgCcaatttgcattttctctcca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	73960674	AA	AA	73960673	3	1	9	1	0	0	0	0	1	0	0	0	8339	739	26	3	839	3	KIAA2022	23	73960673	Missense_Mutation	DNP	CC	TCGA-05-4396-01A-21D-1855-08	2278781	73960673	81309887	17920	26071											
KIAA2022	340533	broad.mit.edu	37	chrX	73960743	73960743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacttagggacctggcGggagtttttgccaggtggtt	17	6	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73960743	T	T	73960743	3	4	9	1	0	0	0	0	1	0	0	0	8339	1116	39	1	909	1	KIAA2022	23	73960743	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	70	73960743	81309817	17921	26072											
KIAA2022	340533	broad.mit.edu	37	chrX	73962998	73962998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgccagaattagtgtccCgagccatatagcgactacag	10	11	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73962998	A	A	73962998	3	1	9	1	0	0	0	0	1	0	0	0	8339	652	23	1	3164	1	KIAA2022	23	73962998	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2255	73962998	81307562	17922	26073											
ZDHHC15	158866	broad.mit.edu	37	chrX	74670640	74670640	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttggatgaactgacctcCacttccagttcttgtgtaaa	7	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74670640	A	A	74670640	4	1	9	1	0	0	0	0	0	1	0	0	17731	603	21	2	749	2	ZDHHC15	23	74670640	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	707642	74670640	80599920	17923	26074											
MAGEE2	139599	broad.mit.edu	37	chrX	75003690	75003690	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattacatattcttgagtGggtctccccaggctctctag	10	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75003690	T	T	75003690	2	4	9	1	0	0	0	0	0	0	0	1	9278	1335	47	2		2	MAGEE2	23	75003690	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	333050	75003690	80266870	17924	26075											
CXorf26	51260	broad.mit.edu	37	chrX	75397414	75397414	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagatttagggaataagctGagagtaggatgataatcaat	12	2	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75397414	T	T	75397414	1	4	9	0	1	0	0	0	0	0	0	0	4137	1305	45	3		3	CXorf26	23	75397414	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	393724	75397414	79873146	17925	26076											
ATRX	546	broad.mit.edu	37	chrX	76920035	76920035	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggcgtgagccaccacgccGggccatattaagatatttct	10	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76920035	C	C	76920035	1	2	9	0	1	0	0	0	0	0	0	0	1212	1131	39	4		4	ATRX	23	76920035	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1522621	76920035	78350525	17926	26077											
ATRX	546	broad.mit.edu	37	chrX	76937990	76937990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaaagcttatcgacacCatcagtggaagcacttgctt	8	12	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76937990	A	A	76937990	3	1	9	1	0	0	0	0	1	0	0	0	1212	594	21	2	4828	2	ATRX	23	76937990	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	17955	76937990	78332570	17927	26078											
ATRX	546	broad.mit.edu	37	chrX	76939503	76939503	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccatcgctcgaaactcGgaatttaagtcttcttccaa	6	12	2	0	rs141815992		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76939503	T	T	76939503	2	4	9	1	0	0	0	0	0	0	0	1	1212	1103	39	1		1	ATRX	23	76939503	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1513	76939503	78331057	17928	26079											
ATRX	546	broad.mit.edu	37	chrX	76939728	76939728	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtgcggaataagagtaGgttacagagccagaacagga	13	5	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76939728	T	T	76939728	2	4	9	1	0	0	0	0	0	0	0	1	1212	987	35	2		2	ATRX	23	76939728	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	225	76939728	78330832	17929	26080											
MAGT1	84061	broad.mit.edu	37	chrX	77130978	77130978	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgaacatgacgataacGgagtaatttctcggtggggc	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77130978	T	T	77130978	2	4	9	1	0	0	0	0	0	0	0	1	9288	1103	39	1		1	MAGT1	23	77130978	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	191250	77130978	78139582	17930	26081											
MAGT1	84061	broad.mit.edu	37	chrX	77150820	77150820	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcacctccttctttctttGggcagaggctgagggaacgt	11	11	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77150820	C	C	77150820	3	2	9	1	0	0	0	0	1	0	0	0	9288	1357	47	4	959	4	MAGT1	23	77150820	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	19842	77150820	78119740	17931	26082											
ATP7A	538	broad.mit.edu	37	chrX	77244009	77244009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagcagtgacaataatccCttctatagtgaatgccaatc	7	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77244009	A	A	77244009	3	1	9	1	0	0	0	0	1	0	0	0	1194	681	24	2	398	2	ATP7A	23	77244009	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	93189	77244009	78026551	17932	26083											
ATP7A	538	broad.mit.edu	37	chrX	77301928	77301928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaactgggtttgctggaccGgattgttaattatagcagag	12	5	0	1	rs147848649		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77301928	T	T	77301928	3	4	9	1	0	0	0	0	1	0	0	0	1194	1116	39	1	4450	1	ATP7A	23	77301928	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	57919	77301928	77968632	17933	26084											
PGK1	5230	broad.mit.edu	37	chrX	77380423	77380423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgctgaggctgtcactcGggctaagcagattgtgtgga	15	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77380423	T	T	77380423	3	4	9	1	0	0	0	0	1	0	0	0	11885	1116	39	1	1023	1	PGK1	23	77380423	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	78495	77380423	77890137	17934	26085											
TAF9B	51616	broad.mit.edu	37	chrX	77388875	77388875	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaggtggaatctgcacCgtaaatctttggcttgtcac	11	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77388875	A	A	77388875	2	1	9	1	0	0	0	0	0	0	0	1	15655	639	23	1		1	TAF9B	23	77388875	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	8452	77388875	77881685	17935	26086											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913556	77913556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaggtttctgggactccCgggttgctggaggcgccagg	18	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77913556	A	A	77913556	3	1	9	1	0	0	0	0	1	0	0	0	17717	652	23	1	1069	1	ZCCHC5	23	77913556	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	524681	77913556	77357004	17936	26087											
TBX22	50945	broad.mit.edu	37	chrX	79279582	79279582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggatgttcccctctgttcGggtcaaggtgaaagggttgg	16	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79279582	T	T	79279582	3	4	9	1	0	0	0	0	1	0	0	0	15780	1116	39	1	387	1	TBX22	23	79279582	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1366026	79279582	75990978	17937	26088											
SATL1	340562	broad.mit.edu	37	chrX	84362698	84362698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcttgtttggttgcctcGggactggttggctcaggcct	14	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84362698	T	T	84362698	3	4	9	1	0	0	0	0	1	0	0	0	13967	1116	39	1	641	1	SATL1	23	84362698	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5083116	84362698	70907862	17938	26089											
PCDH11X	27328	broad.mit.edu	37	chrX	91134001	91134001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatgggaaagtacaattGggtaactacacctactactt	7	8	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91134001	T	T	91134001	3	4	9	1	0	0	0	0	1	0	0	0	11602	1357	47	2	2768	2	PCDH11X	23	91134001	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6771303	91134001	64136559	17939	26090											
XKRX	402415	broad.mit.edu	37	chrX	100169382	100169382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctctgagttctcaaccCtggtccgagggtgctggtga	15	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100169382	A	A	100169382	3	1	9	1	0	0	0	0	1	0	0	0	17566	681	24	2	58	2	XKRX	23	100169382	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	9035381	100169382	55101178	17940	26091											
CENPI	2491	broad.mit.edu	37	chrX	100383719	100383719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagctgccttctcagatGggctcagtgctaaacaactc	9	12	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100383719	T	T	100383719	3	4	9	1	0	0	0	0	1	0	0	0	3263	1348	47	2	1127	2	CENPI	23	100383719	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	214337	100383719	54886841	17941	26092											
TAF7L	54457	broad.mit.edu	37	chrX	100536678	100536678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcctcttctaatcggccCggcagacacacaaatagcat	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100536678	A	A	100536678	1	1	9	0	1	0	0	0	0	0	0	0	15652	667	23	1		1	TAF7L	23	100536678	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	152959	100536678	54733882	17942	26093											
BTK	695	broad.mit.edu	37	chrX	100629456	100629456	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatcaccagtctatttacaGagaatttaaatgttgcaaat	6	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100629456	T	T	100629456	1	4	9	0	1	0	0	0	0	0	0	0	1567	957	33	3		3	BTK	23	100629456	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	92778	100629456	54641104	17943	26094											
ARMCX3	51566	broad.mit.edu	37	chrX	100881093	100881093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgctgaacatatgttccCaaagagccaggaataacacc	7	11	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100881093	A	A	100881093	3	1	9	1	0	0	0	0	1	0	0	0	965	594	21	2	1126	2	ARMCX3	23	100881093	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	251637	100881093	54389467	17944	26095											
NXF5	55998	broad.mit.edu	37	chrX	101092933	101092933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgagccgtgatactcatGgggctgagtccttggggtcg	16	9	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101092933	T	T	101092933	1	4	9	0	1	0	0	0	0	0	0	0	10881	1363	47	2		2	NXF5	23	101092933	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	211840	101092933	54177627	17945	26096											
NXF5	55998	broad.mit.edu	37	chrX	101096069	101096069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatatcaatgtcacggccCatcaagtcttgaagaagcca	7	10	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101096069	A	A	101096069	3	1	9	1	0	0	0	0	1	0	0	0	10881	594	21	2	734	2	NXF5	23	101096069	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3136	101096069	54174491	17946	26097											
TCEAL6	158931	broad.mit.edu	37	chrX	101396016	101396016	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgggcgcttttcggcGgcccgcggctggccctctgg	16	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101396016	T	T	101396016	2	4	9	1	0	0	0	0	0	0	0	1	15797	1103	39	1		1	TCEAL6	23	101396016	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	299947	101396016	53874544	17947	26098											
NXF2B	728343	broad.mit.edu	37	chrX	101623759	101623759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattcttcacagagtagggCgcagtagaatgattgacaaa	10	6	2	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101623759	A	A	101623759	2	1	9	1	0	0	0	0	0	0	0	1	10879	755	27	3		3	NXF2B	23	101623759	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	227743	101623759	53646801	17948	26099											
TMSB15A	11013	broad.mit.edu	37	chrX	101769082	101769082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacacaaaaatcattaacCgtatgtacctaagattaagt	4	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101769082	A	A	101769082	1	1	9	0	1	0	0	0	0	0	0	0	16378	667	23	1		1	TMSB15A	23	101769082	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	145323	101769082	53501478	17949	26100											
ARMCX5	64860	broad.mit.edu	37	chrX	101857708	101857708	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaagcccacacacaaaccCacacttactataaaacaaaa	1	16	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101857708	A	A	101857708	2	1	9	1	0	0	0	0	0	0	0	1	966	581	21	2		2	ARMCX5	23	101857708	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	88626	101857708	53412852	17950	26101											
BHLHB9	80823	broad.mit.edu	37	chrX	102004459	102004459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttattgggaactggttttGggaaggagatgatactagtt	14	2	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102004459	T	T	102004459	3	4	9	1	0	0	0	0	1	0	0	0	1426	1357	47	2	538	2	BHLHB9	23	102004459	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	146751	102004459	53266101	17951	26102											
BEX1	55859	broad.mit.edu	37	chrX	102318029	102318029	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatctatactgcaggatGggctgcctaacgcggaaccg	11	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102318029	T	T	102318029	2	4	9	1	0	0	0	0	0	0	0	1	1416	1335	47	2		2	BEX1	23	102318029	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	313570	102318029	52952531	17952	26103											
BEX1	55859	broad.mit.edu	37	chrX	102318183	102318183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctgagactgtttactgctCgtttctctttggactccatt	8	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102318183	A	A	102318183	3	1	9	1	0	0	0	0	1	0	0	0	1416	884	31	3	361	3	BEX1	23	102318183	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	154	102318183	52952377	17953	26104											
NXF3	56000	broad.mit.edu	37	chrX	102334164	102334164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccttccttgaacacccCgttgacagaaaagcagagca	7	14	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102334164	A	A	102334164	3	1	9	1	0	0	0	0	1	0	0	0	10880	652	23	1	248	1	NXF3	23	102334164	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	15981	102334164	52936396	17954	26105											
NXF3	56000	broad.mit.edu	37	chrX	102337898	102337898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacacagacacctctgccCtcatctaccatagaattact	3	16	4	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102337898	A	A	102337898	1	1	9	0	1	0	0	0	0	0	0	0	10880	696	24	2		2	NXF3	23	102337898	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	3734	102337898	52932662	17955	26106											
BEX2	84707	broad.mit.edu	37	chrX	102564579	102564579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggatcagtgctgactgccCgcaaactatgactcaactgc	11	12	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102564579	A	A	102564579	3	1	9	1	0	0	0	0	1	0	0	0	1417	652	23	1	64	1	BEX2	23	102564579	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	226681	102564579	52705981	17956	26107											
TCEAL3	85012	broad.mit.edu	37	chrX	102864528	102864528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgccccaaggggacaacGgggtgtcaggggagtgaggg	19	8	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102864528	T	T	102864528	3	4	9	1	0	0	0	0	1	0	0	0	15794	1116	39	1	538	1	TCEAL3	23	102864528	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	299949	102864528	52406032	17957	26108											
GLRA4	441509	broad.mit.edu	37	chrX	102974059	102974059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatgcccaggcccacacGggcaggggcagcatccatgt	15	13	0	1	rs111758425		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102974059	T	T	102974059	3	4	9	1	0	0	0	0	1	0	0	0	6521	1116	39	1	501	1	GLRA4	23	102974059	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	109531	102974059	52296501	17958	26109											
PLP1	5354	broad.mit.edu	37	chrX	103043296	103043296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatggaagaagggctctGggggaaagtctccatgtggc	17	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103043296	T	T	103043296	1	4	9	0	1	0	0	0	0	0	0	0	12199	1363	47	2		2	PLP1	23	103043296	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	69237	103043296	52227264	17959	26110											
RAB9B	51209	broad.mit.edu	37	chrX	103080269	103080269	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcactagtttctaaataaGggtaatccccattctccatg	7	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103080269	T	T	103080269	3	4	9	1	0	0	0	0	1	0	0	0	13067	1000	35	2	163	2	RAB9B	23	103080269	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	36973	103080269	52190291	17960	26111											
RAB9B	51209	broad.mit.edu	37	chrX	103080349	103080349	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgtctaccttgttaccCagaactacaaaggggaaatg	8	9	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103080349	A	A	103080349	2	1	9	1	0	0	0	0	0	0	0	1	13067	581	21	2		2	RAB9B	23	103080349	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	80	103080349	52190211	17961	26112											
RAB9B	51209	broad.mit.edu	37	chrX	103080374	103080374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaaggggaaatgctcaGggtccttcacatccgcatag	10	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103080374	T	T	103080374	3	4	9	1	0	0	0	0	1	0	0	0	13067	1000	35	2	268	2	RAB9B	23	103080374	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25	103080374	52190186	17962	26113											
ESX1	80712	broad.mit.edu	37	chrX	103499428	103499428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggagttcgcgaaagctccCgtccctgtccaagcactaac	9	14	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103499428	A	A	103499428	1	1	9	0	1	0	0	0	0	0	0	0	5305	667	23	1		1	ESX1	23	103499428	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	419054	103499428	51771132	17963	26114											
NRK	203447	broad.mit.edu	37	chrX	105168962	105168962	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatggagaagaaaattgctCagagacagatggtccaggat	12	6	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105168962	A	A	105168962	4	1	9	1	0	0	0	0	0	1	0	0	10750	838	29	3	3325	3	NRK	23	105168962	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1669534	105168962	50101598	17964	26115											
SERPINA7	6906	broad.mit.edu	37	chrX	105277500	105277500	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcccaactacgcttcCgttgggttcacaactttccc	5	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105277500	A	A	105277500	2	1	9	1	0	0	0	0	0	0	0	1	14207	639	23	1		1	SERPINA7	23	105277500	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	108538	105277500	49993060	17965	26116											
CXorf57	55086	broad.mit.edu	37	chrX	105855810	105855810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtatttctttagaaactcCcttcagaaatagagcgcacc	6	11	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105855810	A	A	105855810	3	1	9	1	0	0	0	0	1	0	0	0	4146	623	22	2	502	2	CXorf57	23	105855810	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	578310	105855810	49414750	17966	26117											
CXorf57	55086	broad.mit.edu	37	chrX	105868478	105868478	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagaatacagcctgtcccCgtggatccacagatcaaact	7	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105868478	A	A	105868478	2	1	9	1	0	0	0	0	0	0	0	1	4146	639	23	1		1	CXorf57	23	105868478	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	12668	105868478	49402082	17967	26118											
CXorf57	55086	broad.mit.edu	37	chrX	105883846	105883846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagaaagaaatggtaaacGgcatcaagatgatgagcctg	11	6	2	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105883846	T	T	105883846	3	4	9	1	0	0	0	0	1	0	0	0	4146	1116	39	1	1837	1	CXorf57	23	105883846	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15368	105883846	49386714	17968	26119											
CLDN2	9075	broad.mit.edu	37	chrX	106171892	106171892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcttcatgggatcctacGggacttctactcaccactgg	9	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106171892	T	T	106171892	3	4	9	1	0	0	0	0	1	0	0	0	3512	1116	39	1	436	1	CLDN2	23	106171892	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	288046	106171892	49098668	17969	26120											
RBM41	55285	broad.mit.edu	37	chrX	106310827	106310827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcgcttggagatttgacCgttgctttttgttctttcca	9	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106310827	A	A	106310827	3	1	9	1	0	0	0	0	1	0	0	0	13243	652	23	1	82	1	RBM41	23	106310827	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	138935	106310827	48959733	17970	26121											
RBM41	55285	broad.mit.edu	37	chrX	106312604	106312604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatctctttcagtcaccCgagggctaaggttcttcagg	10	11	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106312604	A	A	106312604	3	1	9	1	0	0	0	0	1	0	0	0	13243	652	23	1	302	1	RBM41	23	106312604	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1777	106312604	48957956	17971	26122											
PRPS1	5631	broad.mit.edu	37	chrX	106882671	106882671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggttactgcagtcatccCatgcttcccttatgcccggc	9	16	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106882671	A	A	106882671	3	1	9	1	0	0	0	0	1	0	0	0	12684	594	21	2	275	2	PRPS1	23	106882671	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	570067	106882671	48387889	17972	26123											
MID2	11043	broad.mit.edu	37	chrX	107169452	107169452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagaggtttagtggcacaGggtgctatggggcagcagga	18	6	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107169452	T	T	107169452	3	4	9	1	0	0	0	0	1	0	0	0	9671	1000	35	2	1760	2	MID2	23	107169452	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	286781	107169452	48101108	17973	26124											
TEX13B	56156	broad.mit.edu	37	chrX	107224619	107224619	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccctgcaagacctctgcGggggcaggccctgcctctgc	13	17	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107224619	T	T	107224619	2	4	9	1	0	0	0	0	0	0	0	1	15899	1103	39	1		1	TEX13B	23	107224619	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	55167	107224619	48045941	17974	26125											
COL4A6	1288	broad.mit.edu	37	chrX	107408568	107408568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcagacaaaaggtggtGgctagccctcttttgggctt	12	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107408568	T	T	107408568	1	4	9	0	1	0	0	0	0	0	0	0	3727	1363	47	2		2	COL4A6	23	107408568	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	183949	107408568	47861992	17975	26126											
COL4A6	1288	broad.mit.edu	37	chrX	107408583	107408583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggctagccctcttttGggcttcctgtctttacctcg	11	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107408583	T	T	107408583	1	4	9	0	1	0	0	0	0	0	0	0	3727	1363	47	2		2	COL4A6	23	107408583	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	15	107408583	47861977	17976	26127											
COL4A6	1288	broad.mit.edu	37	chrX	107413859	107413859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgggtcctattaatccgGgggatcctagaggcccaatt	11	10	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107413859	T	T	107413859	3	4	9	1	0	0	0	0	1	0	0	0	3727	1232	43	2	1643	2	COL4A6	23	107413859	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	5276	107413859	47856701	17977	26128											
COL4A6	1288	broad.mit.edu	37	chrX	107446069	107446069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattctctacaatatccatGggaagaggtctttctgttag	9	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107446069	T	T	107446069	1	4	9	0	1	0	0	0	0	0	0	0	3727	1363	47	2		2	COL4A6	23	107446069	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	32210	107446069	47824491	17978	26129											
COL4A5	1287	broad.mit.edu	37	chrX	107814669	107814669	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggatttccaggcagtccCggttttcctggtttacaggg	13	10	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107814669	A	A	107814669	2	1	9	1	0	0	0	0	0	0	0	1	3726	639	23	1		1	COL4A5	23	107814669	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	368600	107814669	47455891	17979	26130											
COL4A5	1287	broad.mit.edu	37	chrX	107930827	107930827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgccacagccagacaacGgatgcaccacaatgcccaca	7	17	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107930827	T	T	107930827	2	4	9	1	0	0	0	0	0	0	0	1	3726	1103	39	1		1	COL4A5	23	107930827	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	116158	107930827	47339733	17980	26131											
IRS4	8471	broad.mit.edu	37	chrX	107977128	107977128	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcccaaaggtgagctcCgaaaagggtttggtagagag	14	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107977128	A	A	107977128	3	1	9	1	0	0	0	0	1	0	0	0	7912	652	23	1	1330	1	IRS4	23	107977128	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	46301	107977128	47293432	17981	26132											
IRS4	8471	broad.mit.edu	37	chrX	107977987	107977987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgagccctgaccacctcGggatccctgtccctcgcctg	9	17	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107977987	T	T	107977987	2	4	9	1	0	0	0	0	0	0	0	1	7912	1124	39	1		1	IRS4	23	107977987	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	859	107977987	47292573	17982	26133											
GUCY2F	2986	broad.mit.edu	37	chrX	108718678	108718678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtccgagaaaaggtcGggtagctaattttattgtct	13	5	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108718678	T	T	108718678	3	4	9	1	0	0	0	0	1	0	0	0	6963	1116	39	1	2910	1	GUCY2F	23	108718678	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	740691	108718678	46551882	17983	26134											
TMEM164	84187	broad.mit.edu	37	chrX	109416556	109416556	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtatcgcatctgggcctcGggacaccagactctcatgac	11	13	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109416556	T	T	109416556	2	4	9	1	0	0	0	0	0	0	0	1	16202	1103	39	1		1	TMEM164	23	109416556	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	697878	109416556	45854004	17984	26135											
PAK3	5063	broad.mit.edu	37	chrX	110407034	110407034	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatgggaattgatcctttgGaagttttaatctgcttatat	8	4	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110407034	A	A	110407034	1	1	9	0	1	0	0	0	0	0	0	0	11496	1189	41	4		4	PAK3	23	110407034	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	990478	110407034	44863526	17985	26136											
CAPN6	827	broad.mit.edu	37	chrX	110491164	110491164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatctgagtaactactttcGggtagccacgagccaggttc	11	10	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110491164	T	T	110491164	3	4	9	1	0	0	0	0	1	0	0	0	2656	1116	39	1	396	1	CAPN6	23	110491164	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	84130	110491164	44779396	17986	26137											
CAPN6	827	broad.mit.edu	37	chrX	110494238	110494238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtccagcatcccaacacCgattccagctcctttcggcc	6	18	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110494238	A	A	110494238	2	1	9	1	0	0	0	0	0	0	0	1	2656	639	23	1		1	CAPN6	23	110494238	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	3074	110494238	44776322	17987	26138											
TRPC5	7224	broad.mit.edu	37	chrX	111020160	111020160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctagtggaaaagctcCttggatgttttctatttccc	9	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111020160	A	A	111020160	3	1	9	1	0	0	0	0	1	0	0	0	16707	681	24	2	622	2	TRPC5	23	111020160	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	525922	111020160	44250400	17988	26139											
AMOT	154796	broad.mit.edu	37	chrX	112033943	112033943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcctctcctctttctccCgaaggagctccatcagtgca	7	15	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112033943	A	A	112033943	3	1	9	1	0	0	0	0	1	0	0	0	582	652	23	1	1280	1	AMOT	23	112033943	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1013783	112033943	43236617	17989	26140											
HTR2C	3358	broad.mit.edu	37	chrX	114141236	114141236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtgcgtgctcaacgaccCaaatttcgttcttattgggt	10	10	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114141236	A	A	114141236	3	1	9	1	0	0	0	0	1	0	0	0	7513	594	21	2	649	2	HTR2C	23	114141236	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2107293	114141236	41129324	17990	26141											
PLS3	5358	broad.mit.edu	37	chrX	114883777	114883777	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaatggctagaagaatcGgagccagagtgtatgctctc	12	8	2	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114883777	T	T	114883777	4	4	9	1	0	0	0	0	0	1	0	0	12203	1117	39	1	1847	1	PLS3	23	114883777	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	742541	114883777	40386783	17991	26142											
AGTR2	186	broad.mit.edu	37	chrX	115303552	115303552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgaagggcaactccaccCttgccactactagcaaaaac	6	13	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115303552	A	A	115303552	3	1	9	1	0	0	0	0	1	0	0	0	402	681	24	2	21	2	AGTR2	23	115303552	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	419775	115303552	39967008	17992	26143											
CXorf61	203413	broad.mit.edu	37	chrX	115593059	115593059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaattatttaaaatatccCgagagaggtcgtagactgca	10	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115593059	A	A	115593059	3	1	9	1	0	0	0	0	1	0	0	0	4149	652	23	1	154	1	CXorf61	23	115593059	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	289507	115593059	39677501	17993	26144											
DOCK11	139818	broad.mit.edu	37	chrX	117676918	117676918	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtcgtcaacgcagaacGgtgcagtctactgtaccaga	11	10	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117676918	T	T	117676918	2	4	9	1	0	0	0	0	0	0	0	1	4726	1103	39	1		1	DOCK11	23	117676918	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2083859	117676918	37593642	17994	26145											
DOCK11	139818	broad.mit.edu	37	chrX	117764345	117764345	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcctgtccttacagaccCgacagagttctacaaggagt	8	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117764345	A	A	117764345	2	1	9	1	0	0	0	0	0	0	0	1	4726	644	23	1		1	DOCK11	23	117764345	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	87427	117764345	37506215	17995	26146											
DOCK11	139818	broad.mit.edu	37	chrX	117777498	117777498	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgcttttcttaaaaatGgacaatctgaagtgtcgctg	8	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117777498	T	T	117777498	4	4	9	1	0	0	0	0	0	1	0	0	4726	1349	47	2	4497	2	DOCK11	23	117777498	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	13153	117777498	37493062	17996	26147											
IL13RA1	3597	broad.mit.edu	37	chrX	117875056	117875056	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatggacatggaatccaccCgagggagccagctcaaattg	11	10	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117875056	A	A	117875056	2	1	9	1	0	0	0	0	0	0	0	1	7699	639	23	1		1	IL13RA1	23	117875056	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	97558	117875056	37395504	17997	26148											
ZCCHC12	170261	broad.mit.edu	37	chrX	117959598	117959598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaagcagtgtgactgccCatggtaaattttttaacacc	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117959598	A	A	117959598	3	1	9	1	0	0	0	0	1	0	0	0	17707	594	21	2	393	2	ZCCHC12	23	117959598	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	84542	117959598	37310962	17998	26149											
LONRF3	79836	broad.mit.edu	37	chrX	118151505	118151505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgttgcagatgaaccCgaatggcccagcctggtgct	11	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118151505	A	A	118151505	3	1	9	1	0	0	0	0	1	0	0	0	8983	652	23	1	2174	1	LONRF3	23	118151505	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	191907	118151505	37119055	17999	26150											
KIAA1210	57481	broad.mit.edu	37	chrX	118220870	118220870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaaatgcccccagaagtGgatgtttgcctgacaggagc	13	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118220870	T	T	118220870	2	4	9	1	0	0	0	0	0	0	0	1	8284	1335	47	2		2	KIAA1210	23	118220870	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	69365	118220870	37049690	18000	26151											
KIAA1210	57481	broad.mit.edu	37	chrX	118242272	118242272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttctgactcagctgccCatgcgctgaacaattccact	7	14	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118242272	A	A	118242272	1	1	9	0	1	0	0	0	0	0	0	0	8284	609	21	2		2	KIAA1210	23	118242272	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	21402	118242272	37028288	18001	26152											
PGRMC1	10857	broad.mit.edu	37	chrX	118377203	118377203	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaaagatgagagtgccCggaaaaatgattaaagcatt	9	6	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118377203	A	A	118377203	2	1	9	1	0	0	0	0	0	0	0	1	11901	643	23	1		1	PGRMC1	23	118377203	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	134931	118377203	36893357	18002	26153											
SLC25A5	292	broad.mit.edu	37	chrX	118603930	118603930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgattttgcccgtaccCgtctagcagctgatgtgggt	11	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118603930	A	A	118603930	3	1	9	1	0	0	0	0	1	0	0	0	14626	652	23	1	424	1	SLC25A5	23	118603930	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	226727	118603930	36666630	18003	26154											
SLC25A5	292	broad.mit.edu	37	chrX	118604074	118604074	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagggtattatcatctacCgagccgcctacttcggtatc	9	12	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118604074	A	A	118604074	2	1	9	1	0	0	0	0	0	0	0	1	14626	644	23	1		1	SLC25A5	23	118604074	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	144	118604074	36666486	18004	26155											
UBE2A	7319	broad.mit.edu	37	chrX	118717163	118717163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtaccaggagaacaaacGggaatatgaaaagcgtgttt	12	6	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118717163	T	T	118717163	3	4	9	1	0	0	0	0	1	0	0	0	16970	1116	39	1	426	1	UBE2A	23	118717163	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	113089	118717163	36553397	18005	26156											
NKRF	55922	broad.mit.edu	37	chrX	118723773	118723773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagcctcctctgctgagcGgccctgaatttcatttcttg	9	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118723773	T	T	118723773	3	4	9	1	0	0	0	0	1	0	0	0	10542	1116	39	1	461	1	NKRF	23	118723773	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	6610	118723773	36546787	18006	26157											
SEPT6	23157	broad.mit.edu	37	chrX	118797555	118797555	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagactggagctggacaccCggctgtgtgtgggtggctgg	18	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118797555	A	A	118797555	2	1	9	1	0	0	0	0	0	0	0	1	14181	639	23	1		1	SEPT6	23	118797555	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	73782	118797555	36473005	18007	26158											
UPF3B	65109	broad.mit.edu	37	chrX	118975354	118975354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagtggcattctaccacCgttatccccactccacccag	5	17	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118975354	A	A	118975354	1	1	9	0	1	0	0	0	0	0	0	0	17132	667	23	1		1	UPF3B	23	118975354	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	177799	118975354	36295206	18008	26159											
UPF3B	65109	broad.mit.edu	37	chrX	118975372	118975372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgttatccccactccaccCagaaaacgaaagacaatgaa	5	14	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118975372	A	A	118975372	1	1	9	0	1	0	0	0	0	0	0	0	17132	609	21	2		2	UPF3B	23	118975372	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	18	118975372	36295188	18009	26160											
RNF113A	7737	broad.mit.edu	37	chrX	119004572	119004572	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggaattgcatcctcatcGgggtcttctggcaagtcgga	13	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119004572	T	T	119004572	2	4	9	1	0	0	0	0	0	0	0	1	13538	1103	39	1		1	RNF113A	23	119004572	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	29200	119004572	36265988	18010	26161											
AKAP14	158798	broad.mit.edu	37	chrX	119048781	119048781	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcaactgctgacctaccCgtagcacgaatctctgctgg	8	14	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119048781	A	A	119048781	2	1	9	1	0	0	0	0	0	0	0	1	450	639	23	1		1	AKAP14	23	119048781	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	44209	119048781	36221779	18011	26162											
FAM70A	55026	broad.mit.edu	37	chrX	119418936	119418936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcagcccttctagtgtcCgttgtggtcagaccattatt	8	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119418936	A	A	119418936	1	1	9	0	1	0	0	0	0	0	0	0	5656	667	23	1		1	FAM70A	23	119418936	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	370155	119418936	35851624	18012	26163											
LAMP2	3920	broad.mit.edu	37	chrX	119576411	119576411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaatttctaatccttcaGggtaatccacagtctttttc	5	9	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119576411	T	T	119576411	1	4	9	0	1	0	0	0	0	0	0	0	8690	1015	35	2		2	LAMP2	23	119576411	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	157475	119576411	35694149	18013	26164											
CT47B1	643311	broad.mit.edu	37	chrX	120007721	120007721	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagctatacacagatacctGgattttcttggcttcacctc	6	11	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120007721	T	T	120007721	1	4	9	0	1	0	0	0	0	0	0	0	4023	1363	47	2		2	CT47B1	23	120007721	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	431310	120007721	35262839	18014	26165											
CT47B1	643311	broad.mit.edu	37	chrX	120008754	120008754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctagcccccttaccctcGggggccacggcctcctctga	10	20	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120008754	T	T	120008754	2	4	9	1	0	0	0	0	0	0	0	1	4023	1103	39	1		1	CT47B1	23	120008754	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1033	120008754	35261806	18015	26166											
GRIA3	2892	broad.mit.edu	37	chrX	122561802	122561802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttatagatcactctccGggcgcattgttggaggggtt	13	7	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122561802	T	T	122561802	3	4	9	1	0	0	0	0	1	0	0	0	6835	1116	39	1	1934	1	GRIA3	23	122561802	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2553048	122561802	32708758	18016	26167											
THOC2	57187	broad.mit.edu	37	chrX	122747541	122747541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtccggtggcacttcacGgtcgttgtttgagtgatcct	12	9	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122747541	T	T	122747541	3	4	9	1	0	0	0	0	1	0	0	0	15988	1116	39	1	329	1	THOC2	23	122747541	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	185739	122747541	32523019	18017	26168											
THOC2	57187	broad.mit.edu	37	chrX	122758460	122758460	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcagcaaagaaaccttcCgtatcgactggcttcatttt	7	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122758460	A	A	122758460	4	1	9	1	0	0	0	0	0	1	0	0	15988	661	23	1	1715	1	THOC2	23	122758460	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	10919	122758460	32512100	18018	26169											
THOC2	57187	broad.mit.edu	37	chrX	122765539	122765539	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagacacttgtacttacCgaaatatgatgggcatacat	8	8	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122765539	A	A	122765539	2	1	9	1	0	0	0	0	0	0	0	1	15988	666	23	1		1	THOC2	23	122765539	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	7079	122765539	32505021	18019	26170											
THOC2	57187	broad.mit.edu	37	chrX	122765633	122765633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacatcaattgaaggcactCgctttatataatcttctgtg	7	8	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122765633	A	A	122765633	3	1	9	1	0	0	0	0	1	0	0	0	15988	884	31	3	2462	3	THOC2	23	122765633	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	94	122765633	32504927	18020	26171											
STAG2	10735	broad.mit.edu	37	chrX	123195111	123195111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccttgtggatagcatgtGggactgtgctactgagctgc	13	8	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123195111	T	T	123195111	3	4	9	1	0	0	0	0	1	0	0	0	15361	1357	47	2	1508	2	STAG2	23	123195111	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	429478	123195111	32075449	18021	26172											
STAG2	10735	broad.mit.edu	37	chrX	123217337	123217337	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccatccacctttaaatttGgcatttcttgatattctgag	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123217337	C	C	123217337	3	2	9	1	0	0	0	0	1	0	0	0	15361	1339	47	4	3097	4	STAG2	23	123217337	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	22226	123217337	32053223	18022	26173											
ODZ1	10178	broad.mit.edu	37	chrX	123515066	123515066	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccgtccatcattgtatcGgggagtcataggtagttggt	13	8	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123515066	T	T	123515066	2	4	9	1	0	0	0	0	0	0	0	1	10929	1124	39	1		1	ODZ1	23	123515066	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	297729	123515066	31755494	18023	26174											
ODZ1	10178	broad.mit.edu	37	chrX	123517929	123517929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaaatgagtaactcttatGgggttggtaaggtctgcata	11	5	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123517929	T	T	123517929	2	4	9	1	0	0	0	0	0	0	0	1	10929	1335	47	2		2	ODZ1	23	123517929	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	2863	123517929	31752631	18024	26175											
ODZ1	10178	broad.mit.edu	37	chrX	123539095	123539095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaccatctggattcaccCgataggtactttgagtattt	10	8	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123539095	A	A	123539095	3	1	9	1	0	0	0	0	1	0	0	0	10929	652	23	1	3045	1	ODZ1	23	123539095	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	21166	123539095	31731465	18025	26176											
ODZ1	10178	broad.mit.edu	37	chrX	123554306	123554306	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatagtcagccagtatacttGtccgccaggcaccacaagcc	8	14	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123554306	C	C	123554306	3	2	9	1	0	0	0	0	1	0	0	0	10929	1386	48	4	3393	4	ODZ1	23	123554306	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	15211	123554306	31716254	18026	26177											
ODZ1	10178	broad.mit.edu	37	chrX	123780653	123780653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattggttgaacagtcatcCattatttctagtaatacaga	6	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123780653	A	A	123780653	3	1	9	1	0	0	0	0	1	0	0	0	10929	594	21	2	6707	2	ODZ1	23	123780653	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	226347	123780653	31489907	18027	26178											
ODZ1	10178	broad.mit.edu	37	chrX	123838919	123838919	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgattgcagtggcgctcaatGctgtgcacttccagttgcag	12	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123838919	C	C	123838919	3	2	9	1	0	0	0	0	1	0	0	0	10929	1319	46	4	7351	4	ODZ1	23	123838919	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	58266	123838919	31431641	18028	26179											
ACTRT1	139741	broad.mit.edu	37	chrX	127185830	127185830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatttctgctagcttttctCgaatttccctaggattcaaa	5	10	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127185830	A	A	127185830	3	1	9	1	0	0	0	0	1	0	0	0	218	884	31	3	778	3	ACTRT1	23	127185830	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	3346911	127185830	28084730	18029	26180											
SMARCA1	6594	broad.mit.edu	37	chrX	128633691	128633691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacacaaataagttttaaaGgaaatgaaatagctcaccat	5	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128633691	T	T	128633691	1	4	9	0	1	0	0	0	0	0	0	0	14882	1015	35	2		2	SMARCA1	23	128633691	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1447861	128633691	26636869	18030	26181											
SMARCA1	6594	broad.mit.edu	37	chrX	128645906	128645906	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggtccaggaatatttcGgtagtgtttcaggtaaccaa	12	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128645906	T	T	128645906	2	4	9	1	0	0	0	0	0	0	0	1	14882	1124	39	1		1	SMARCA1	23	128645906	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	12215	128645906	26624654	18031	26182											
OCRL	4952	broad.mit.edu	37	chrX	128682491	128682491	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtattcttttggttgtagtGagtggttttctcttccctaa	9	6	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128682491	T	T	128682491	1	4	9	0	1	0	0	0	0	0	0	0	10918	1305	45	3		3	OCRL	23	128682491	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	36585	128682491	26588069	18032	26183											
ZDHHC9	51114	broad.mit.edu	37	chrX	128948612	128948612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagccccactccaacaacGgacactgccctgtatactca	5	19	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128948612	T	T	128948612	1	4	9	0	1	0	0	0	0	0	0	0	17748	1131	39	1		1	ZDHHC9	23	128948612	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	266121	128948612	26321948	18033	26184											
UTP14A	10813	broad.mit.edu	37	chrX	129042648	129042648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttttgcctaatttcaggcGgaaattggctgagaggtctg	13	7	2	1	rs143564742		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129042648	T	T	129042648	3	4	9	1	0	0	0	0	1	0	0	0	17222	1116	39	1	190	1	UTP14A	23	129042648	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	94036	129042648	26227912	18034	26185											
UTP14A	10813	broad.mit.edu	37	chrX	129058693	129058693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtacctagcacttggtGggtgctcaacaaatgcttac	11	9	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129058693	T	T	129058693	1	4	9	0	1	0	0	0	0	0	0	0	17222	1363	47	2		2	UTP14A	23	129058693	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	16045	129058693	26211867	18035	26186											
BCORL1	63035	broad.mit.edu	37	chrX	129147582	129147582	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaaccccctttctgtttcGgcctcagtcttggtgcctgt	9	14	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129147582	T	T	129147582	2	4	9	1	0	0	0	0	0	0	0	1	1392	1103	39	1		1	BCORL1	23	129147582	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	88889	129147582	26122978	18036	26187											
BCORL1	63035	broad.mit.edu	37	chrX	129149310	129149310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgccgggcagctgaccccCagtcagggggcgcccatcag	15	15	2	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129149310	A	A	129149310	2	1	9	1	0	0	0	0	0	0	0	1	1392	581	21	2		2	BCORL1	23	129149310	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1728	129149310	26121250	18037	26188											
BCORL1	63035	broad.mit.edu	37	chrX	129184716	129184716	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctcggatcttcagggccGggcagagggtgatcccggtg	16	12	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129184716	C	C	129184716	3	2	9	1	0	0	0	0	1	0	0	0	1392	1116	39	4	4907	4	BCORL1	23	129184716	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	35406	129184716	26085844	18038	26189											
AIFM1	9131	broad.mit.edu	37	chrX	129267312	129267312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattgactgatgccagtacGgcttagcagctccagtcata	9	11	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129267312	T	T	129267312	3	4	9	1	0	0	0	0	1	0	0	0	426	1116	39	1	433	1	AIFM1	23	129267312	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	82596	129267312	26003248	18039	26190											
AIFM1	9131	broad.mit.edu	37	chrX	129289083	129289083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttttcattagtgccatGggctcacccaccctacccca	6	16	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129289083	T	T	129289083	1	4	9	0	1	0	0	0	0	0	0	0	426	1363	47	2		2	AIFM1	23	129289083	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	21771	129289083	25981477	18040	26191											
ZNF280C	55609	broad.mit.edu	37	chrX	129380899	129380899	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcatcgtcatcctcatcctGagtttcttctactttcttct	3	13	7	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129380899	T	T	129380899	3	4	9	1	0	0	0	0	1	0	0	0	17942	1299	45	3	2169	3	ZNF280C	23	129380899	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	91816	129380899	25889661	18041	26192											
SLC25A14	9016	broad.mit.edu	37	chrX	129505624	129505624	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggaacatcattgtatcCtttgagagaatgaaagcaag	9	8	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129505624	A	A	129505624	1	1	9	0	1	0	0	0	0	0	0	0	14590	696	24	2		2	SLC25A14	23	129505624	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	124725	129505624	25764936	18042	26193											
RBMX2	51634	broad.mit.edu	37	chrX	129543277	129543277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgcgggacaagaaaactGggaaatccaaaggattctgt	12	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129543277	T	T	129543277	3	4	9	1	0	0	0	0	1	0	0	0	13260	1348	47	2	234	2	RBMX2	23	129543277	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	37653	129543277	25727283	18043	26194											
ENOX2	10495	broad.mit.edu	37	chrX	129761946	129761946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataccttattatcaagacGgtgcaagtaggaacagatgt	9	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129761946	T	T	129761946	3	4	9	1	0	0	0	0	1	0	0	0	5169	1116	39	1	153	1	ENOX2	23	129761946	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	218669	129761946	25508614	18044	26195											
ENOX2	10495	broad.mit.edu	37	chrX	129801511	129801511	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttccactcacattgaatGagaattccagaaagggcctg	9	9	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129801511	T	T	129801511	2	4	9	1	0	0	0	0	0	0	0	1	5169	1277	45	3		3	ENOX2	23	129801511	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	39565	129801511	25469049	18045	26196											
ENOX2	10495	broad.mit.edu	37	chrX	129813528	129813528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctaccagacagatacaGggctttgtccaccatgtact	7	13	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129813528	T	T	129813528	3	4	9	1	0	0	0	0	1	0	0	0	5169	991	35	2	1337	2	ENOX2	23	129813528	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	12017	129813528	25457032	18046	26197											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217767	130217767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtgaacgagtttaccCgccgcaagcatcttgaactg	10	12	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130217767	A	A	130217767	3	1	9	1	0	0	0	0	1	0	0	0	885	652	23	1	389	1	ARHGAP36	23	130217767	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	404239	130217767	25052793	18047	26198											
ARHGAP36	158763	broad.mit.edu	37	chrX	130219503	130219503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaatctcacctcccttGgtatcagtctgcagccaaga	8	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130219503	T	T	130219503	1	4	9	0	1	0	0	0	0	0	0	0	885	1363	47	2		2	ARHGAP36	23	130219503	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1736	130219503	25051057	18048	26199											
ARHGAP36	158763	broad.mit.edu	37	chrX	130219992	130219992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccaggaaaacaaagctgGggattgatcactatgttgct	11	7	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130219992	T	T	130219992	3	4	9	1	0	0	0	0	1	0	0	0	885	1232	43	2	1240	2	ARHGAP36	23	130219992	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	489	130219992	25050568	18049	26200											
IGSF1	3547	broad.mit.edu	37	chrX	130413257	130413257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcaccacagcagagaaGggccgtgactatgaagagca	12	10	1	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130413257	T	T	130413257	3	4	9	1	0	0	0	0	1	0	0	0	7666	1000	35	2	2364	2	IGSF1	23	130413257	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	193265	130413257	24857303	18050	26201											
FRMD7	90167	broad.mit.edu	37	chrX	131216453	131216453	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttgatttgggctcttcCgaaagcctgaagaaagcatg	12	8	1	3	rs145014972		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131216453	A	A	131216453	2	1	9	1	0	0	0	0	0	0	0	1	6115	639	23	1		1	FRMD7	23	131216453	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	803196	131216453	24054107	18051	26202											
FRMD7	90167	broad.mit.edu	37	chrX	131231391	131231391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttaaaacacaatatctcCataagttttatttaaatgtc	2	7	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131231391	A	A	131231391	1	1	9	0	1	0	0	0	0	0	0	0	6115	609	21	2		2	FRMD7	23	131231391	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	14938	131231391	24039169	18052	26203											
RAP2C	57826	broad.mit.edu	37	chrX	131351344	131351344	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggggggaaagatcacccCgctagctgtggcgcggctag	18	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131351344	A	A	131351344	1	1	9	0	1	0	0	0	0	0	0	0	13150	667	23	1		1	RAP2C	23	131351344	5'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	119953	131351344	23919216	18053	26204											
MBNL3	55796	broad.mit.edu	37	chrX	131525048	131525048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcatggaagcatcagtagGgtgagcatagcggcaatcat	12	7	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131525048	T	T	131525048	3	4	9	1	0	0	0	0	1	0	0	0	9448	1232	43	2	547	2	MBNL3	23	131525048	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	173704	131525048	23745512	18054	26205											
GPC4	2239	broad.mit.edu	37	chrX	132438718	132438718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacccaggcatctaggaaGggagaaacttcaaattcatt	9	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132438718	T	T	132438718	1	4	9	0	1	0	0	0	0	0	0	0	6665	1015	35	2		2	GPC4	23	132438718	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	913670	132438718	22831842	18055	26206											
GPC4	2239	broad.mit.edu	37	chrX	132439845	132439845	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggttgggcgttcctcGgggtgatgtggtctgaagcg	19	7	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132439845	T	T	132439845	2	4	9	1	0	0	0	0	0	0	0	1	6665	1103	39	1		1	GPC4	23	132439845	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1127	132439845	22830715	18056	26207											
GPC3	2719	broad.mit.edu	37	chrX	132887715	132887715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaccacattgcagtaacCgccacagggtttaaccatca	7	13	1	1	rs141100113	byFrequency	TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132887715	A	A	132887715	3	1	9	1	0	0	0	0	1	0	0	0	6664	652	23	1	1013	1	GPC3	23	132887715	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	447870	132887715	22382845	18057	26208											
CCDC160	347475	broad.mit.edu	37	chrX	133378844	133378844	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggagaaatggatgctagaaGaaaacactggaaggagaata	13	3	0	4			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133378844	A	A	133378844	3	1	9	1	0	0	0	0	1	0	0	0	2819	942	33	4	16	4	CCDC160	23	133378844	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	491129	133378844	21891716	18058	26209											
ZNF75D	7626	broad.mit.edu	37	chrX	134428008	134428008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagacccactagtctccCacatagcccccatctggggg	8	17	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134428008	A	A	134428008	3	1	9	1	0	0	0	0	1	0	0	0	18263	595	21	2	1493	2	ZNF75D	23	134428008	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1049164	134428008	20842552	18059	26210											
ZNF449	203523	broad.mit.edu	37	chrX	134494578	134494578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatacaggggagagaccCtatgaatgcactgtatgtaa	10	8	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134494578	A	A	134494578	2	1	9	1	0	0	0	0	0	0	0	1	18047	668	24	2		2	ZNF449	23	134494578	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	66570	134494578	20775982	18060	26211											
SAGE1	55511	broad.mit.edu	37	chrX	134989604	134989604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattccgggcatgaataccaGggatcagtgtatgtttgttt	11	6	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134989604	T	T	134989604	3	4	9	1	0	0	0	0	1	0	0	0	13920	1000	35	2	1040	2	SAGE1	23	134989604	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	495026	134989604	20280956	18061	26212											
SLC9A6	10479	broad.mit.edu	37	chrX	135067950	135067950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaagcaccgccgggccCgcttcctgcacgaaaccggc	10	18	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135067950	A	A	135067950	3	1	9	1	0	0	0	0	1	0	0	0	14832	652	23	1	291	1	SLC9A6	23	135067950	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	78346	135067950	20202610	18062	26213											
SLC9A6	10479	broad.mit.edu	37	chrX	135076988	135076988	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggtatggcattcatgttccGagtgatgtaaataatgtgac	11	6	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135076988	T	T	135076988	2	4	9	1	0	0	0	0	0	0	0	1	14832	1045	37	3		3	SLC9A6	23	135076988	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9038	135076988	20193572	18063	26214											
SLC9A6	10479	broad.mit.edu	37	chrX	135084290	135084290	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgttcttgctatattccacGagcttcaagttgatgttgaa	8	8	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135084290	T	T	135084290	4	4	9	1	0	0	0	0	0	1	0	0	14832	1059	37	3	839	3	SLC9A6	23	135084290	Nonsense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	7302	135084290	20186270	18064	26215											
FHL1	2273	broad.mit.edu	37	chrX	135290816	135290816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggtaggctaaagagtcCttgctaagtctgccaggcta	11	10	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135290816	A	A	135290816	1	1	9	0	1	0	0	0	0	0	0	0	5935	696	24	2		2	FHL1	23	135290816	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	206526	135290816	19979744	18065	26216											
FHL1	2273	broad.mit.edu	37	chrX	135292163	135292163	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagcaagtgtattgtccCgactgtgccaaaaagctgta	11	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135292163	A	A	135292163	1	1	9	0	1	0	0	0	0	0	0	0	5935	639	23	1		1	FHL1	23	135292163	3'UTR	SNP	C	TCGA-05-4396-01A-21D-1855-08	1347	135292163	19978397	18066	26217											
GPR112	139378	broad.mit.edu	37	chrX	135455219	135455219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgaagaaggcacagaccCtgaggtgagtgcagctcagg	14	9	1	5			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135455219	A	A	135455219	3	1	9	1	0	0	0	0	1	0	0	0	6694	681	24	2	7818	2	GPR112	23	135455219	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	163056	135455219	19815341	18067	26218											
BRS3	680	broad.mit.edu	37	chrX	135574281	135574281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttcaccattttctctcGggttttggctttcagcaatt	6	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135574281	T	T	135574281	3	4	9	1	0	0	0	0	1	0	0	0	1531	1116	39	1	957	1	BRS3	23	135574281	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	119062	135574281	19696279	18068	26219											
HTATSF1	27336	broad.mit.edu	37	chrX	135579934	135579934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcaaggatggtgacaccCagaccgatgccggcggagaa	15	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135579934	A	A	135579934	3	1	9	1	0	0	0	0	1	0	0	0	7503	595	21	2	93	2	HTATSF1	23	135579934	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	5653	135579934	19690626	18069	26220											
HTATSF1	27336	broad.mit.edu	37	chrX	135581733	135581733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttgaatttctctgtccGggtctgttgaattgcttgtg	10	6	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135581733	T	T	135581733	1	4	9	0	1	0	0	0	0	0	0	0	7503	1131	39	1		1	HTATSF1	23	135581733	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	1799	135581733	19688827	18070	26221											
CD40LG	959	broad.mit.edu	37	chrX	135741229	135741229	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaaaaggatactacacCatgagcaacaacttggtaac	8	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135741229	A	A	135741229	2	1	9	1	0	0	0	0	0	0	0	1	3046	581	21	2		2	CD40LG	23	135741229	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	159496	135741229	19529331	18071	26222											
CD40LG	959	broad.mit.edu	37	chrX	135741351	135741351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcttcgagtcaagctcCatttatagccagcctctgcc	9	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135741351	A	A	135741351	3	1	9	1	0	0	0	0	1	0	0	0	3046	594	21	2	581	2	CD40LG	23	135741351	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	122	135741351	19529209	18072	26223											
RBMX	27316	broad.mit.edu	37	chrX	135957355	135957355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagaaacctttaagtccCagagaatcaactttcattgc	6	9	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135957355	A	A	135957355	1	1	9	0	1	0	0	0	0	0	0	0	13259	609	21	2		2	RBMX	23	135957355	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	216004	135957355	19313205	18073	26224											
ATP11C	286410	broad.mit.edu	37	chrX	138864877	138864877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggctacacagagtgtcCgatacccatcctaggagtaa	10	10	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138864877	A	A	138864877	3	1	9	1	0	0	0	0	1	0	0	0	1125	652	23	1	1723	1	ATP11C	23	138864877	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2907522	138864877	16405683	18074	26225											
SPANXC	64663	broad.mit.edu	37	chrX	140335727	140335727	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggttgattctgttctctcGggcgtggtcattcagcagtt	14	8	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140335727	T	T	140335727	2	4	9	1	0	0	0	0	0	0	0	1	15103	1124	39	1		1	SPANXC	23	140335727	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	1470850	140335727	14934833	18075	26226											
SPANXE	171489	broad.mit.edu	37	chrX	140785604	140785604	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattgtcattgcccaaggttGagagatgtagcttcttgcta	10	7	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140785604	T	T	140785604	1	4	9	0	1	0	0	0	0	0	0	0	15105	1305	45	3		3	SPANXE	23	140785604	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	449877	140785604	14484956	18076	26227											
SPANXE	171489	broad.mit.edu	37	chrX	140785699	140785699	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggttgattctgttctttcGggcgtggtcattcaccagtt	13	8	4	1	rs149351052		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140785699	T	T	140785699	2	4	9	1	0	0	0	0	0	0	0	1	15105	1124	39	1		1	SPANXE	23	140785699	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	95	140785699	14484861	18077	26228											
SPANXE	171489	broad.mit.edu	37	chrX	140785800	140785800	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtttttagttttttcGgagcaggttgcgggtctgag	14	5	1	2	rs145377089		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140785800	T	T	140785800	3	4	9	1	0	0	0	0	1	0	0	0	15105	1116	39	1	181	1	SPANXE	23	140785800	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	101	140785800	14484760	18078	26229											
MAGEC1	9947	broad.mit.edu	37	chrX	140993983	140993983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacttttgagggttttgccCagtcttctctccagattcct	8	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140993983	A	A	140993983	3	1	9	1	0	0	0	0	1	0	0	0	9272	595	21	2	799	2	MAGEC1	23	140993983	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	208183	140993983	14276577	18079	26230											
MAGEC1	9947	broad.mit.edu	37	chrX	140995951	140995951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggcgcggtttcttctcCtcaaatatcaagtgaagcag	10	9	4	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995951	A	A	140995951	3	1	9	1	0	0	0	0	1	0	0	0	9272	681	24	2	2767	2	MAGEC1	23	140995951	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1968	140995951	14274609	18080	26231											
MAGEC2	51438	broad.mit.edu	37	chrX	141291185	141291185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagggcccacttctatcaGggcaaggccaaaaagaagct	11	11	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291185	T	T	141291185	3	4	9	1	0	0	0	0	1	0	0	0	9273	991	35	2	536	2	MAGEC2	23	141291185	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	295234	141291185	13979375	18081	26232											
MAGEC2	51438	broad.mit.edu	37	chrX	141291218	141291218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagctccatgaactcacGggctctcttgagtatcacag	9	11	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291218	T	T	141291218	3	4	9	1	0	0	0	0	1	0	0	0	9273	1116	39	1	569	1	MAGEC2	23	141291218	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	33	141291218	13979342	18082	26233											
SLITRK4	139065	broad.mit.edu	37	chrX	142717032	142717032	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaaaaagcaacaaacacCgttaaaatgaggaccactaa	7	9	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142717032	A	A	142717032	2	1	9	1	0	0	0	0	0	0	0	1	14859	639	23	1		1	SLITRK4	23	142717032	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	1425814	142717032	12553528	18083	26234											
SPANXN2	494119	broad.mit.edu	37	chrX	142803716	142803716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgttattggattcacagGggctcttcctcttctcccca	7	12	4	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142803716	T	T	142803716	3	4	9	1	0	0	0	0	1	0	0	0	15107	1232	43	2	503	2	SPANXN2	23	142803716	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	86684	142803716	12466844	18084	26235											
SLITRK2	84631	broad.mit.edu	37	chrX	144904496	144904496	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgctttgtcctgctgaccCacttagacctcagggggaat	10	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144904496	A	A	144904496	3	1	9	1	0	0	0	0	1	0	0	0	14857	594	21	2	555	2	SLITRK2	23	144904496	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	2100780	144904496	10366064	18085	26236											
FMR1	2332	broad.mit.edu	37	chrX	147019025	147019025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttccttccaataattcaaGggttggacctaatgccccag	7	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147019025	T	T	147019025	3	4	9	1	0	0	0	0	1	0	0	0	6018	1000	35	2	1073	2	FMR1	23	147019025	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	2114529	147019025	8251535	18086	26237											
MAGEA11	4110	broad.mit.edu	37	chrX	148798169	148798169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagtcctgagcattatGggggtgtatgctggaaggga	18	4	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148798169	T	T	148798169	3	4	9	1	0	0	0	0	1	0	0	0	9253	1348	47	2	1050	2	MAGEA11	23	148798169	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1779144	148798169	6472391	18087	26238											
MTM1	4534	broad.mit.edu	37	chrX	149809819	149809819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacttaccctgctcttttGgtggttccgtatcgtgcctc	9	13	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149809819	T	T	149809819	3	4	9	1	0	0	0	0	1	0	0	0	10031	1339	47	2	632	2	MTM1	23	149809819	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1011650	149809819	5460741	18088	26239											
PRRG3	79057	broad.mit.edu	37	chrX	150869137	150869137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagctgcagaaagcgaccCgtcaccacccctcctatgct	8	18	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150869137	A	A	150869137	3	1	9	1	0	0	0	0	1	0	0	0	12713	652	23	1	338	1	PRRG3	23	150869137	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1059318	150869137	4401423	18089	26240											
CNGA2	1260	broad.mit.edu	37	chrX	150911738	150911738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcctgctgcactttgccCgcatgtttgagttctttgac	9	13	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150911738	A	A	150911738	3	1	9	1	0	0	0	0	1	0	0	0	3629	652	23	1	785	1	CNGA2	23	150911738	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	42601	150911738	4358822	18090	26241											
CNGA2	1260	broad.mit.edu	37	chrX	150911883	150911883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaatccataggctttgGggtcgacacctgggtttacc	10	12	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150911883	T	T	150911883	3	4	9	1	0	0	0	0	1	0	0	0	3629	1232	43	2	930	2	CNGA2	23	150911883	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	145	150911883	4358677	18091	26242											
GABRA3	2556	broad.mit.edu	37	chrX	151358165	151358165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccaatacaggtctctcGggggtgcttctcagtttctc	11	12	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151358165	T	T	151358165	1	4	9	0	1	0	0	0	0	0	0	0	6222	1131	39	1		1	GABRA3	23	151358165	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	446282	151358165	3912395	18092	26243											
GABRA3	2556	broad.mit.edu	37	chrX	151393301	151393301	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccaaatgcatgggacactCagcatgaattgttaacctaa	7	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151393301	A	A	151393301	4	1	9	1	0	0	0	0	0	1	0	0	6222	835	29	3	930	3	GABRA3	23	151393301	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	35136	151393301	3877259	18093	26244											
GABRA3	2556	broad.mit.edu	37	chrX	151532929	151532929	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcctgcttcacaaagtcCccgggttcttgtcgtcttga	9	12	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151532929	A	A	151532929	2	1	9	1	0	0	0	0	0	0	0	1	6222	610	22	2		2	GABRA3	23	151532929	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	139628	151532929	3737631	18094	26245											
GABRQ	55879	broad.mit.edu	37	chrX	151818273	151818273	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgccatccacatgactgagGagctgcatatccctcagttc	8	14	1	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151818273	A	A	151818273	3	1	9	1	0	0	0	0	1	0	0	0	6235	1175	41	4	701	4	GABRQ	23	151818273	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	285344	151818273	3452287	18095	26246											
MAGEA1	4100	broad.mit.edu	37	chrX	152482462	152482462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgatctgattatcaccCagcaggccatcataggagag	11	10	3	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152482462	A	A	152482462	2	1	9	1	0	0	0	0	0	0	0	1	9251	581	21	2		2	MAGEA1	23	152482462	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	664189	152482462	2788098	18096	26247											
BGN	633	broad.mit.edu	37	chrX	152772002	152772002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagagatgggcgggaaccCactggagaacagtggctttg	15	9	0	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152772002	A	A	152772002	3	1	9	1	0	0	0	0	1	0	0	0	1424	594	21	2	595	2	BGN	23	152772002	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	289540	152772002	2498558	18097	26248											
ATP2B3	492	broad.mit.edu	37	chrX	152821585	152821585	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacaacatcaacacggccCgggccatcgcagccaaatgc	11	15	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152821585	A	A	152821585	2	1	9	1	0	0	0	0	0	0	0	1	1145	643	23	1		1	ATP2B3	23	152821585	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	49583	152821585	2448975	18098	26249											
HCFC1	3054	broad.mit.edu	37	chrX	153222750	153222750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcagacactcatatgtcGggggaggcccctacccgtgg	13	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153222750	T	T	153222750	1	4	9	0	1	0	0	0	0	0	0	0	7057	1131	39	1		1	HCFC1	23	153222750	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	401165	153222750	2047810	18099	26250											
MECP2	4204	broad.mit.edu	37	chrX	153295726	153295726	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttttatttcagttaatcGggaagctttgtcagagccct	8	7	2	1	rs62621672		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153295726	T	T	153295726	1	4	9	0	1	0	0	0	0	0	0	0	9516	1131	39	1		1	MECP2	23	153295726	3'UTR	SNP	G	TCGA-05-4396-01A-21D-1855-08	72976	153295726	1974834	18100	26251											
MECP2	4204	broad.mit.edu	37	chrX	153295965	153295965	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcggcggtggcaaccgcGggctgagtcttagctggctc	18	11	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153295965	T	T	153295965	2	4	9	1	0	0	0	0	0	0	0	1	9516	1103	39	1		1	MECP2	23	153295965	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	239	153295965	1974595	18101	26252											
TKTL1	8277	broad.mit.edu	37	chrX	153537732	153537732	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgtggcaacaggatggctCggacaaggactgggagttgc	17	7	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153537732	A	A	153537732	2	1	9	1	0	0	0	0	0	0	0	1	16058	871	31	3		3	TKTL1	23	153537732	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	241767	153537732	1732828	18102	26253											
TKTL1	8277	broad.mit.edu	37	chrX	153556299	153556299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagtggaggatcactaccCgcaaggtgtgtgtgggcatt	14	8	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153556299	A	A	153556299	3	1	9	1	0	0	0	0	1	0	0	0	16058	652	23	1	1659	1	TKTL1	23	153556299	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	18567	153556299	1714261	18103	26254											
TKTL1	8277	broad.mit.edu	37	chrX	153557875	153557875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccccaggtggcatcgGggaagctgtctgcgcagccg	15	12	1	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153557875	T	T	153557875	3	4	9	1	0	0	0	0	1	0	0	0	16058	1232	43	2	1678	2	TKTL1	23	153557875	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	1576	153557875	1712685	18104	26255											
FLNA	2316	broad.mit.edu	37	chrX	153595180	153595180	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggtctccacagtgaactCtgcccgcttcttcaccatgt	7	15	5	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153595180	A	A	153595180	4	1	9	1	0	0	0	0	0	1	0	0	5991	922	32	3	7208	3	FLNA	23	153595180	Nonsense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	37305	153595180	1675380	18105	26256											
FLNA	2316	broad.mit.edu	37	chrX	153596438	153596438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatcagcttcaggttccCgtccacgatggccttgctgt	11	13	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153596438	A	A	153596438	3	1	9	1	0	0	0	0	1	0	0	0	5991	652	23	1	7733	1	FLNA	23	153596438	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	1258	153596438	1674122	18106	26257											
GDI1	2664	broad.mit.edu	37	chrX	153668814	153668814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagcccatatttataccCgctctacggcttgggcgagc	10	13	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153668814	A	A	153668814	3	1	9	1	0	0	0	0	1	0	0	0	6384	652	23	1	702	1	GDI1	23	153668814	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	72376	153668814	1601746	18107	26258											
FAM50A	9130	broad.mit.edu	37	chrX	153676933	153676933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcctggccctgacccCggcctcgactccagccctgg	12	19	0	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153676933	A	A	153676933	1	1	9	0	1	0	0	0	0	0	0	0	5628	667	23	1		1	FAM50A	23	153676933	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	8119	153676933	1593627	18108	26259											
SLC10A3	8273	broad.mit.edu	37	chrX	153716792	153716792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgatgcagaagtctctcCgctcctcaatcagtgtgggc	10	13	3	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153716792	A	A	153716792	3	1	9	1	0	0	0	0	1	0	0	0	14488	652	23	1	949	1	SLC10A3	23	153716792	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	39859	153716792	1553768	18109	26260											
G6PD	2539	broad.mit.edu	37	chrX	153762340	153762340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacgcaggcgatgttgtccCggttccagatggggccgaag	15	10	0	1	rs137852328		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153762340	A	A	153762340	3	1	9	1	0	0	0	0	1	0	0	0	6206	652	23	1	895	1	G6PD	23	153762340	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	45548	153762340	1508220	18110	26261											
MPP1	4354	broad.mit.edu	37	chrX	154009878	154009878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccatgcctacccacctgGggctcaatgtcaaggatggc	10	14	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154009878	T	T	154009878	2	4	9	1	0	0	0	0	0	0	0	1	9827	1219	43	2		2	MPP1	23	154009878	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	247538	154009878	1260682	18111	26262											
MPP1	4354	broad.mit.edu	37	chrX	154014591	154014591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataatctggataatgtcccCagtagcaaacttcagtcccg	8	11	2	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154014591	A	A	154014591	3	1	9	1	0	0	0	0	1	0	0	0	9827	594	21	2	863	2	MPP1	23	154014591	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	4713	154014591	1255969	18112	26263											
F8	2157	broad.mit.edu	37	chrX	154089934	154089934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagtcaaggccttcccCgattttttccccaaccactg	6	15	1	0	rs12556569		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154089934	A	A	154089934	1	1	9	0	1	0	0	0	0	0	0	0	5393	667	23	1		1	F8	23	154089934	Intron	SNP	C	TCGA-05-4396-01A-21D-1855-08	75343	154089934	1180626	18113	26264											
F8A1	8263	broad.mit.edu	37	chrX	154115756	154115756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatctccccctcaggacaGggagtctgatccatcccatt	7	16	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154115756	T	T	154115756	3	4	9	1	0	0	0	0	1	0	0	0	5394	991	35	2		2	F8A1	23	154115756	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	25822	154115756	1154804	18114	26265											
F8	2157	broad.mit.edu	37	chrX	154157148	154157148	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggtgacttctatttcGggcttattttgtccctcatt	8	11	2	1	rs147629393		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154157148	T	T	154157148	2	4	9	1	0	0	0	0	0	0	0	1	5393	1103	39	1		1	F8	23	154157148	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	41392	154157148	1113412	18115	26266											
F8	2157	broad.mit.edu	37	chrX	154185336	154185336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgaaactagagtaatagcGggtcaggcaccgaggatctg	13	8	2	1	rs137852417		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154185336	T	T	154185336	3	4	9	1	0	0	0	0	1	0	0	0	5393	1116	39	1	5499	1	F8	23	154185336	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	28188	154185336	1085224	18116	26267											
RAB39B	116442	broad.mit.edu	37	chrX	154490409	154490409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggctgaacgtgtactttGgtctcttctaaccactcatg	9	10	3	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154490409	T	T	154490409	2	4	9	1	0	0	0	0	0	0	0	1	13038	1335	47	2		2	RAB39B	23	154490409	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	305073	154490409	780151	18117	26268											
RAB39B	116442	broad.mit.edu	37	chrX	154493432	154493432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcgatctccaccaagcGggagaaaaaatccaccccca	8	15	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154493432	T	T	154493432	3	4	9	1	0	0	0	0	1	0	0	0	13038	1116	39	1	507	1	RAB39B	23	154493432	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	3023	154493432	777128	18118	26269											
SPRY3	10251	broad.mit.edu	37	chrX	155003536	155003536	+	Missense_Mutation	SNP	G	T	T													ctaaaaaatcaaggcaaaatGgatgctgcggtgacagatga							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155003536	T	T	155003536	3	4	9	1	0	0	0	0	1	0	0	0	15225	1348	47	2	5	2	SPRY3	23	155003536	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08	510104	155003536	267024	18119	26270	171	2									
SPRY3	10251	broad.mit.edu	37	chrX	155003545	155003545	+	Silent	SNP	G	C	C													caaggcaaaatggatgctgcGgtgacagatgattttcaaca							TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155003545	C	C	155003545	2	2	9	1	0	0	0	0	0	0	0	1	15225	1103	39	4		4	SPRY3	23	155003545	Silent	SNP	G	TCGA-05-4396-01A-21D-1855-08	9	155003545	267015	18120	26271	171	2									
VAMP7	6845	broad.mit.edu	37	chrX	155169336	155169336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcatgtagtcagtgccagGggttaaacaattctcgcctc	9	10	3	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155169336	T	T	155169336	1	4	9	0	1	0	0	0	0	0	0	0	17244	1247	43	2		2	VAMP7	23	155169336	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	165791	155169336	101224	18121	26272											
VAMP7	6845	broad.mit.edu	37	chrX	155169401	155169401	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaccagcagaaatcttgctCgagccatgtgtatgaagaac	9	10	1	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155169401	A	A	155169401	2	1	9	1	0	0	0	0	0	0	0	1	17244	894	31	3		3	VAMP7	23	155169401	Silent	SNP	C	TCGA-05-4396-01A-21D-1855-08	65	155169401	101159	18122	26273											
IL9R	3581	broad.mit.edu	37	chrX	155231089	155231089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtaactgctgcaagaacGgacagacactgctgcagaga	11	11	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155231089	T	T	155231089	1	4	9	0	1	0	0	0	0	0	0	0	7778	1131	39	1		1	IL9R	23	155231089	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	61688	155231089	39471	18123	26274											
IL9R	3581	broad.mit.edu	37	chrX	155231119	155231119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcagagaacttgccacGgtgtttcatgctgtggctgg	14	9	1	1			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155231119	T	T	155231119	1	4	9	0	1	0	0	0	0	0	0	0	7778	1131	39	1		1	IL9R	23	155231119	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	30	155231119	39441	18124	26275											
TSPY2	64591	broad.mit.edu	37	chrY	6115655	6115655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatcatgttgttctttcGgagtaacccctacttccaga	7	11	2	2			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6115655	T	T	6115655	3	4	9	1	0	0	0	0	1	0	0	0	16783	1116	39	1	627	1	TSPY2	24	6115655	Missense_Mutation	SNP	G	TCGA-05-4396-01A-21D-1855-08		6115655	53257911	18125	26276											
AMELY	266	broad.mit.edu	37	chrY	6737959	6737959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagaaaccactttatttGggatgaagaatccacccact	7	10	0	3			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6737959	T	T	6737959	1	4	9	0	1	0	0	0	0	0	0	0	570	1363	47	2		2	AMELY	24	6737959	Intron	SNP	G	TCGA-05-4396-01A-21D-1855-08	622304	6737959	52635607	18126	26277											
USP9Y	8287	broad.mit.edu	37	chrY	14945718	14945718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaagctttaggacaccCggctatactaagtaaagtcc	7	9	0	0			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14945718	A	A	14945718	3	1	9	1	0	0	0	0	1	0	0	0	17218	652	23	1	5252	1	USP9Y	24	14945718	Missense_Mutation	SNP	C	TCGA-05-4396-01A-21D-1855-08	8207759	14945718	44427848	18127	26278											
ACAP3	116983	broad.mit.edu	37	chr1	1233224	1233224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctatagcaactgtcagggCtctcgcggtaggcggaggcg	16	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1233224	A	A	1233224	3	1	10	1	0	0	0	0	1	0	0	0	120	797	28	3	1442	3	ACAP3	1	1233224	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08		1233224	248017397	1	26279											
ATAD3B	83858	broad.mit.edu	37	chr1	1431272	1431272	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgcattttccgtctggctCacagggggagggtgaggctt	16	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1431272	T	T	1431272	1	4	10	0	1	0	0	0	0	0	0	0	1078	841	29	4		4	ATAD3B	1	1431272	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	198048	1431272	247819349	2	26280											
PRDM16	63976	broad.mit.edu	37	chr1	3342546	3342546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtgtaccccgttcgcGgttggtttgccccacggagg	14	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3342546	T	T	3342546	1	4	10	0	1	0	0	0	0	0	0	0	12563	1131	39	1		1	PRDM16	1	3342546	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1911274	3342546	245908075	3	26281											
ARHGEF16	27237	broad.mit.edu	37	chr1	3396480	3396480	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctgcagcaggaggatggtGagtgcaggggcgttgggcac	19	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3396480	C	C	3396480	1	2	10	0	1	0	0	0	0	0	0	0	901	1305	45	4		4	ARHGEF16	1	3396480	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	53934	3396480	245854141	4	26282											
CAMTA1	23261	broad.mit.edu	37	chr1	7151475	7151475	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaatgtgtaccataagTggattgatttgcattgatta	8	4	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7151475	A	A	7151475	1	1	10	0	1	0	0	0	0	0	0	0	2639	1711	59	5		5	CAMTA1	1	7151475	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3754995	7151475	242099146	5	26283											
UBE4B	10277	broad.mit.edu	37	chr1	10197141	10197141	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagatggcgatcagcctccAttttctgagccgaaattccc	8	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10197141	G	G	10197141	2	3	10	1	0	0	0	0	0	0	0	1	17009	204	8	5		5	UBE4B	1	10197141	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	3045666	10197141	239053480	6	26284											
UBE4B	10277	broad.mit.edu	37	chr1	10240059	10240059	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagacacagccaaggccaacGaggcaagcagaagcagcggc	13	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10240059	A	A	10240059	1	1	10	0	1	0	0	0	0	0	0	0	17009	1073	37	4		4	UBE4B	1	10240059	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	42918	10240059	239010562	7	26285											
C1orf127	148345	broad.mit.edu	37	chr1	11008812	11008812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggaggctggggacctcgCtgagcttgcaccactctggg	18	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11008812	A	A	11008812	3	1	10	1	0	0	0	0	1	0	0	0	2014	796	28	3	1095	3	C1orf127	1	11008812	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	768753	11008812	238241809	8	26286											
PTCHD2	57540	broad.mit.edu	37	chr1	11577583	11577583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgttgctggctggccGtgcttgtcaccatgcctgca	12	13	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11577583	T	T	11577583	3	4	10	1	0	0	0	0	1	0	0	0	12839	1145	40	3	1835	3	PTCHD2	1	11577583	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	568771	11577583	237673038	9	26287											
MAD2L2	10459	broad.mit.edu	37	chr1	11734865	11734865	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcgcgctcttccacgtaAagctgcatctgacggacaca	10	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11734865	G	G	11734865	2	3	10	1	0	0	0	0	0	0	0	1	9238	1	1	5		5	MAD2L2	1	11734865	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	157282	11734865	237515756	10	26288											
HSPB7	27129	broad.mit.edu	37	chr1	16342122	16342122	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggacgtgttctgtatGcgggtgacgccgtgcccgga	16	11	1	1	rs114208608	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16342122	C	C	16342122	3	2	10	1	0	0	0	0	1	0	0	0	7492	1319	46	4	50	4	HSPB7	1	16342122	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4607257	16342122	232908499	11	26289											
EPHA2	1969	broad.mit.edu	37	chr1	16462249	16462249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgctgcggccctccagCctcaccttggggggctctgg	16	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16462249	A	A	16462249	3	1	10	1	0	0	0	0	1	0	0	0	5209	738	26	3	1649	3	EPHA2	1	16462249	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	120127	16462249	232788372	12	26290											
CROCC	9696	broad.mit.edu	37	chr1	17266430	17266430	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagccaggacctactgggCaccctgcggaagcagcttag	13	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17266430	A	A	17266430	2	1	10	1	0	0	0	0	0	0	0	1	3925	697	25	3		3	CROCC	1	17266430	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	804181	17266430	231984191	13	26291											
PADI4	23569	broad.mit.edu	37	chr1	17634563	17634563	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaggggcagccccagggcaGaggagattttgagagcccac	16	11	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17634563	T	T	17634563	1	4	10	0	1	0	0	0	0	0	0	0	11474	957	33	3		3	PADI4	1	17634563	5'Flank	SNP	G	TCGA-05-4397-01A-01D-1265-08	368133	17634563	231616058	14	26292											
IGSF21	84966	broad.mit.edu	37	chr1	18692014	18692014	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttccccgctgggtccacAgcgccgagcccacctacttc	9	18	0	0	rs140063076		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18692014	T	T	18692014	3	4	10	1	0	0	0	0	1	0	0	0	7669	188	7	5	860	5	IGSF21	1	18692014	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1057451	18692014	230558607	15	26293											
UBR4	23352	broad.mit.edu	37	chr1	19436750	19436750	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaaaggcagagtcacaatCaggaacactacacatctgct	9	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19436750	T	T	19436750	1	4	10	0	1	0	0	0	0	0	0	0	17030	841	29	4		4	UBR4	1	19436750	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	744736	19436750	229813871	16	26294											
AKR7A3	22977	broad.mit.edu	37	chr1	19610431	19610431	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtttcagccttcatctAaagatattgctggttcccct	6	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19610431	G	G	19610431	1	3	10	0	1	0	0	0	0	0	0	0	476	377	13	5		5	AKR7A3	1	19610431	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	173681	19610431	229640190	17	26295											
HTR6	3362	broad.mit.edu	37	chr1	19992205	19992205	+	5'UTR	DEL	C	-	-													ccggggccctcatctgctttCccgccaccctatcactccct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19992205	-	-	19992205	6	5	10	0	1	1	0	1	0	0	0	0	7521	870	30	0		0	HTR6	1	19992205	5'UTR	DEL	C	TCGA-05-4397-01A-01D-1265-08	381774	19992205	229258416	18	26296											
HSPG2	3339	broad.mit.edu	37	chr1	22192207	22192207	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcatggtgtccaaatgctCaccgtgatctgcacatcggg	11	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22192207	G	G	22192207	1	3	10	0	1	0	0	0	0	0	0	0	7500	841	29	4		4	HSPG2	1	22192207	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2200002	22192207	227058414	19	26297											
HNRNPR	10236	broad.mit.edu	37	chr1	23650093	23650093	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttccacagaaggtgaTaaatgcataccctctattct	5	11	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23650093	C	C	23650093	3	2	10	1	0	0	0	0	1	0	0	0	7339	1406	49	5	1303	5	HNRNPR	1	23650093	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1457886	23650093	225600528	20	26298											
TCEA3	6920	broad.mit.edu	37	chr1	23713895	23713895	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcattcctcaactccctcagTtcatcactggccatttcctg	5	16	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23713895	A	A	23713895	3	1	10	1	0	0	0	0	1	0	0	0	15791	1722	60	5	221	5	TCEA3	1	23713895	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	63802	23713895	225536726	21	26299											
PAFAH2	5051	broad.mit.edu	37	chr1	26300892	26300892	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaatgggtagaaagttttgGgtaatccagaagttaagggc	13	4	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26300892	A	A	26300892	1	1	10	0	1	0	0	0	0	0	0	0	11481	1247	43	4		4	PAFAH2	1	26300892	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2586997	26300892	222949729	22	26300											
FGR	2268	broad.mit.edu	37	chr1	27943704	27943704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgtggcaccacccctacCtttggtggtctcgctttccc	11	16	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27943704	A	A	27943704	3	1	10	1	0	0	0	0	1	0	0	0	5931	695	24	2	1089	2	FGR	1	27943704	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1642812	27943704	221306917	23	26301											
PPP1R8	5511	broad.mit.edu	37	chr1	28177047	28177047	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagggagaaaaactttccaTgtgtgcggtatcgtctttca	10	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28177047	C	C	28177047	1	2	10	0	1	0	0	0	0	0	0	0	12478	1479	51	5		5	PPP1R8	1	28177047	3'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	233343	28177047	221073574	24	26302											
DNAJC8	22826	broad.mit.edu	37	chr1	28537106	28537106	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaagccttttgtgctctgtCagcatcatcttgatttttgt	7	8	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28537106	G	G	28537106	3	3	10	1	0	0	0	0	1	0	0	0	4695	826	29	4	505	4	DNAJC8	1	28537106	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	360059	28537106	220713515	25	26303											
PTPRU	10076	broad.mit.edu	37	chr1	29606079	29606079	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtcttctccaacctgcacCcaggcaccacctacctgttc	5	18	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29606079	T	T	29606079	3	4	10	1	0	0	0	0	1	0	0	0	12921	623	22	4	1713	4	PTPRU	1	29606079	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1068973	29606079	219644542	26	26304											
PUM1	9698	broad.mit.edu	37	chr1	31409385	31409385	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcatgggacagaggtcagTgacaaactcttcaaaaacag	10	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31409385	C	C	31409385	1	2	10	0	1	0	0	0	0	0	0	0	12933	1711	59	5		5	PUM1	1	31409385	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1803306	31409385	217841236	27	26305											
COL16A1	1307	broad.mit.edu	37	chr1	32167741	32167741	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgtatttgccccatggccGaaggtagcccaaagaccgag	11	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32167741	A	A	32167741	2	1	10	1	0	0	0	0	0	0	0	1	3705	1049	37	4		4	COL16A1	1	32167741	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	758356	32167741	217082880	28	26306											
KIAA1522	57648	broad.mit.edu	37	chr1	33235819	33235819	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccatgtccatctcccccCaggccacctacctgtcgaag	8	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33235819	T	T	33235819	4	4	10	1	0	0	0	0	0	1	0	0	8308	595	21	4	1061	4	KIAA1522	1	33235819	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1068078	33235819	216014802	29	26307											
CSMD2	114784	broad.mit.edu	37	chr1	34049279	34049279	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatcatattgcttctcgctGaggaagtactccactgtgag	9	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34049279	A	A	34049279	2	1	10	1	0	0	0	0	0	0	0	1	3979	1277	45	4		4	CSMD2	1	34049279	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	813460	34049279	215201342	30	26308											
CSMD2	114784	broad.mit.edu	37	chr1	34052631	34052631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgacagctccccccgccacCttcccttccttccccagtcc	4	25	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34052631	A	A	34052631	1	1	10	0	1	0	0	0	0	0	0	0	3979	696	24	2		2	CSMD2	1	34052631	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3352	34052631	215197990	31	26309											
CSMD2	114784	broad.mit.edu	37	chr1	34071591	34071591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggagtaagtcaaatctGtggcaaggagagaagctttt	15	4	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34071591	T	T	34071591	1	4	10	0	1	0	0	0	0	0	0	0	3979	1392	48	3		3	CSMD2	1	34071591	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	18960	34071591	215179030	32	26310											
CSMD2	114784	broad.mit.edu	37	chr1	34112374	34112374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagaagcttcctatgagagGgctgagagagtcccgtccgt	13	9	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34112374	T	T	34112374	3	4	10	1	0	0	0	0	1	0	0	0	3979	1232	43	2	6099	2	CSMD2	1	34112374	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	40783	34112374	215138247	33	26311											
C1orf94	84970	broad.mit.edu	37	chr1	34684395	34684395	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccttctcctcccttagcccTtggatcaggactaggggctc	9	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34684395	A	A	34684395	1	1	10	0	1	0	0	0	0	0	0	0	2093	1624	56	5		5	C1orf94	1	34684395	3'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	572021	34684395	214566226	34	26312											
THRAP3	9967	broad.mit.edu	37	chr1	36752349	36752349	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagccgagttgaatcttctaAgcgcaagtctgcaaaggaga	11	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36752349	T	T	36752349	3	4	10	1	0	0	0	0	1	0	0	0	15997	72	3	5	524	5	THRAP3	1	36752349	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	2067954	36752349	212498272	35	26313											
RSPO1	284654	broad.mit.edu	37	chr1	38095426	38095426	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taacacctctggggctgggtCagcagcaggaggcccaggcc	15	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38095426	A	A	38095426	1	1	10	0	1	0	0	0	0	0	0	0	13820	841	29	3		3	RSPO1	1	38095426	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	1343077	38095426	211155195	36	26314											
MTF1	4520	broad.mit.edu	37	chr1	38322977	38322977	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtgagggttgcaccttcAatatttcttggcatgggtgt	13	6	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38322977	C	C	38322977	3	2	10	1	0	0	0	0	1	0	0	0	10016	126	5	5	1947	5	MTF1	1	38322977	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	227551	38322977	210927644	37	26315											
ZNF684	127396	broad.mit.edu	37	chr1	40998901	40998901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttaaatctcccaaaaatcCatatgataaaaaggaaatgt	5	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40998901	T	T	40998901	1	4	10	0	1	0	0	0	0	0	0	0	18218	609	21	4		4	ZNF684	1	40998901	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2675924	40998901	208251720	38	26316											
CCDC30	728621	broad.mit.edu	37	chr1	42965846	42965846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcaatgcttgtggaacGtacagtgcatattggcggtg	15	6	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42965846	T	T	42965846	1	4	10	0	1	0	0	0	0	0	0	0	2832	1160	40	3		3	CCDC30	1	42965846	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1966945	42965846	206284775	39	26317											
CDC20	991	broad.mit.edu	37	chr1	43828590	43828590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatggctatggctgcatcaGcattcgtatgtactgttctc	9	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43828590	A	A	43828590	1	1	10	0	1	0	0	0	0	0	0	0	3089	986	34	4		4	CDC20	1	43828590	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	862744	43828590	205422031	40	26318											
IPO13	9670	broad.mit.edu	37	chr1	44432092	44432092	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcacctgacctactgaactCtgaggtggtccgggtccccc	10	16	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44432092	G	G	44432092	1	3	10	0	1	0	0	0	0	0	0	0	7864	928	32	4		4	IPO13	1	44432092	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	603502	44432092	204818529	41	26319											
ZSWIM5	57643	broad.mit.edu	37	chr1	45508771	45508771	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctaataaaagccccaaaaTatctgtgtgaaaactgtcca	5	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45508771	C	C	45508771	1	2	10	0	1	0	0	0	0	0	0	0	18373	1421	49	5		5	ZSWIM5	1	45508771	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1076679	45508771	203741850	42	26320											
CYP4A11	1579	broad.mit.edu	37	chr1	47403570	47403570	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggagaggtttcagatattGatgtttgaacagccactctc	11	7	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47403570	T	T	47403570	1	4	10	0	1	0	0	0	0	0	0	0	4216	1305	45	3		3	CYP4A11	1	47403570	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1894799	47403570	201847051	43	26321											
CYP4X1	260293	broad.mit.edu	37	chr1	47433568	47433568	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcagacagtgaattgatAagaggcctcagtccccatta	10	10	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47433568	C	C	47433568	1	2	10	0	1	0	0	0	0	0	0	0	4226	377	13	5		5	CYP4X1	1	47433568	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	29998	47433568	201817053	44	26322											
EPS15	2060	broad.mit.edu	37	chr1	51874055	51874055	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggattaaaagaagagatgtCattaaaatgttccaaaatgc	9	4	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51874055	A	A	51874055	1	1	10	0	1	0	0	0	0	0	0	0	5234	841	29	3		3	EPS15	1	51874055	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4440487	51874055	197376566	45	26323											
EPS15	2060	broad.mit.edu	37	chr1	51875246	51875246	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttctttctgacttccttGagttgctcctccagctgggc	8	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51875246	T	T	51875246	2	4	10	1	0	0	0	0	0	0	0	1	5234	1277	45	3		3	EPS15	1	51875246	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1191	51875246	197375375	46	26324											
SLC1A7	6512	broad.mit.edu	37	chr1	53571315	53571315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgactggccagcacacctGtcacttcccagccatgccac	8	18	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53571315	T	T	53571315	1	4	10	0	1	0	0	0	0	0	0	0	14550	1392	48	3		3	SLC1A7	1	53571315	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1696069	53571315	195679306	47	26325											
C1orf123	54987	broad.mit.edu	37	chr1	53686221	53686221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcccctccgtgtccccgCggcgggcggcctcccctcac	10	23	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53686221	A	A	53686221	1	1	10	0	1	0	0	0	0	0	0	0	2011	783	27	3		3	C1orf123	1	53686221	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	114906	53686221	195564400	48	26326											
TMEM48	55706	broad.mit.edu	37	chr1	54275475	54275475	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttataaaacaagttttagTcaagctttagaatataaggt	7	3	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54275475	C	C	54275475	1	2	10	0	1	0	0	0	0	0	0	0	16295	1682	58	5		5	TMEM48	1	54275475	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	589254	54275475	194975146	49	26327											
TTC22	55001	broad.mit.edu	37	chr1	55253465	55253466	+	Nonsense_Mutation	DNP	CC	AA	AA													ggcaggcagtctcttctgctCctcactgcccagctccagga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55253466	AA	AA	55253465	4	1	10	1	0	0	0	0	0	1	0	0	16815	864	30	3	1174	3	TTC22	1	55253465	Nonsense_Mutation	DNP	CC	TCGA-05-4397-01A-01D-1265-08	977990	55253465	193997156	50	26328											
C1orf177	163747	broad.mit.edu	37	chr1	55277513	55277513	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggagaagggtaacccatAcaccaagctggaggagaatg	15	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55277513	T	T	55277513	3	4	10	1	0	0	0	0	1	0	0	0	2037	391	14	5	545	5	C1orf177	1	55277513	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	24048	55277513	193973108	51	26329											
USP24	23358	broad.mit.edu	37	chr1	55560837	55560837	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttctctccagcttagctAattatctttaaaatctcaaa	2	9	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55560837	C	C	55560837	1	2	10	0	1	0	0	0	0	0	0	0	17181	377	13	5		5	USP24	1	55560837	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	283324	55560837	193689784	52	26330											
C1orf168	199920	broad.mit.edu	37	chr1	57216826	57216826	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacatgttccttctacctgtGtggacgttggtcatctgaat	9	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57216826	C	C	57216826	3	2	10	1	0	0	0	0	1	0	0	0	2032	1368	48	4	956	4	C1orf168	1	57216826	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1655989	57216826	192033795	53	26331											
C8B	732	broad.mit.edu	37	chr1	57395200	57395200	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcatgaagaccaatttgaCcagcaattccacttcccatc	6	13	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57395200	G	G	57395200	3	3	10	1	0	0	0	0	1	0	0	0	2442	508	18	4	126	4	C8B	1	57395200	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	178374	57395200	191855421	54	26332											
INADL	10207	broad.mit.edu	37	chr1	62550300	62550300	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttggtctcagcattgtgGgaggaaaagacacacccttg	13	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62550300	C	C	62550300	3	2	10	1	0	0	0	0	1	0	0	0	7801	1233	43	4	4483	4	INADL	1	62550300	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5155100	62550300	186700321	55	26333											
LEPR	3953	broad.mit.edu	37	chr1	66101817	66101817	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccatttctgccagtatgacAtaatgaagcaaaatttttta	5	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66101817	T	T	66101817	1	4	10	0	1	0	0	0	0	0	0	0	8800	232	8	5		5	LEPR	1	66101817	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	3551517	66101817	183148804	56	26334											
SGIP1	84251	broad.mit.edu	37	chr1	67145492	67145492	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaacagagcagtggccccgGatgaacatgcccttgatgtg	12	11	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67145492	T	T	67145492	1	4	10	0	1	0	0	0	0	0	0	0	14319	1189	41	3		3	SGIP1	1	67145492	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1043675	67145492	182105129	57	26335											
RPE65	6121	broad.mit.edu	37	chr1	68895425	68895425	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagctgattttctcagtTttgctaccaaaaacatatct	5	9	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68895425	A	A	68895425	1	1	10	0	1	0	0	0	0	0	0	0	13656	1856	64	5		5	RPE65	1	68895425	3'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	1749933	68895425	180355196	58	26336											
LRRC7	57554	broad.mit.edu	37	chr1	70300612	70300612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaggtaagtgctttaccaGtgccagttgatgagacttca	10	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70300612	T	T	70300612	1	4	10	0	1	0	0	0	0	0	0	0	9107	1044	36	3		3	LRRC7	1	70300612	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1405187	70300612	178950009	59	26337											
FPGT	8790	broad.mit.edu	37	chr1	74671550	74671550	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgtacactttgcctttttGagtaacattccagagatagg	8	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74671550	T	T	74671550	1	4	10	0	1	0	0	0	0	0	0	0	6097	1305	45	3		3	FPGT	1	74671550	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	4370938	74671550	174579071	60	26338											
C1orf173	127254	broad.mit.edu	37	chr1	75038355	75038355	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgcaaggcttccttcctcAgggctgccctccgaaacctg	9	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75038355	T	T	75038355	2	4	10	1	0	0	0	0	0	0	0	1	2034	175	7	5		5	C1orf173	1	75038355	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	366805	75038355	174212266	61	26339											
C1orf173	127254	broad.mit.edu	37	chr1	75038802	75038802	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagacccacagcatctttTgctgctgcttgtcctatggg	9	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75038802	C	C	75038802	2	2	10	1	0	0	0	0	0	0	0	1	2034	1799	63	5		5	C1orf173	1	75038802	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	447	75038802	174211819	62	26340											
C1orf173	127254	broad.mit.edu	37	chr1	75042515	75042515	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaacatgggaagtttgacCagatttatgagtcatggtct	11	5	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75042515	G	G	75042515	1	3	10	0	1	0	0	0	0	0	0	0	2034	609	21	4		4	C1orf173	1	75042515	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3713	75042515	174208106	63	26341											
LHX8	431707	broad.mit.edu	37	chr1	75626524	75626524	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattcaccaacaactcttGgactccagcccttgttaccc	4	17	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75626524	T	T	75626524	4	4	10	1	0	0	0	0	0	1	0	0	8848	1349	47	2	1049	2	LHX8	1	75626524	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	584009	75626524	173624097	64	26342											
SLC44A5	204962	broad.mit.edu	37	chr1	76084831	76084831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggagagcgggaaggaggCagggagtgagacagggagtg	23	3	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76084831	A	A	76084831	1	1	10	0	1	0	0	0	0	0	0	0	14753	725	25	3		3	SLC44A5	1	76084831	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	458307	76084831	173165790	65	26343											
PIGK	10026	broad.mit.edu	37	chr1	77629531	77629531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtaatttgctaattacCgtcttttctgccacatttgt	6	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77629531	A	A	77629531	3	1	10	1	0	0	0	0	1	0	0	0	11985	666	23	1	627	1	PIGK	1	77629531	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1544700	77629531	171621090	66	26344											
GIPC2	54810	broad.mit.edu	37	chr1	78557815	78557815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtagcagggtgttcaGgatgggagacacacaagatg	15	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78557815	A	A	78557815	1	1	10	0	1	0	0	0	0	0	0	0	6457	1015	35	4		4	GIPC2	1	78557815	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	928284	78557815	170692806	67	26345											
LPHN2	23266	broad.mit.edu	37	chr1	81968585	81968585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcttggctccagcagtGgcaccaataccagtagccct	11	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81968585	A	A	81968585	1	1	10	0	1	0	0	0	0	0	0	0	9003	1363	47	4		4	LPHN2	1	81968585	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3410770	81968585	167282036	68	26346											
LPHN2	23266	broad.mit.edu	37	chr1	82456749	82456749	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggcaatagtgatggttatAtaatccccattaacaaagaa	9	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456749	T	T	82456749	3	4	10	1	0	0	0	0	1	0	0	0	9003	449	16	5	4206	5	LPHN2	1	82456749	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	488164	82456749	166793872	69	26347											
TTLL7	79739	broad.mit.edu	37	chr1	84399141	84399141	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagaactgttctagtccctGaatttttatcctcttcttcc	4	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84399141	A	A	84399141	1	1	10	0	1	0	0	0	0	0	0	0	16858	1305	45	4		4	TTLL7	1	84399141	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1942392	84399141	164851480	70	26348											
PRKACB	5567	broad.mit.edu	37	chr1	84663368	84663368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaataaatacatttattGtgaggtaatacattttcact	6	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84663368	T	T	84663368	1	4	10	0	1	0	0	0	0	0	0	0	12604	1392	48	3		3	PRKACB	1	84663368	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	264227	84663368	164587253	71	26349											
RPF1	80135	broad.mit.edu	37	chr1	84962049	84962049	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagagtatgaatgggtccAtaaggtatgtgcttattgtt	13	3	0	2	rs147803982	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84962049	G	G	84962049	3	3	10	1	0	0	0	0	1	0	0	0	13657	217	8	5	1034	5	RPF1	1	84962049	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	298681	84962049	164288572	72	26350											
BRDT	676	broad.mit.edu	37	chr1	92459667	92459667	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtgtgcaagacacaaccTctgccaatactacccttgtt	6	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92459667	A	A	92459667	3	1	10	1	0	0	0	0	1	0	0	0	1517	1551	54	5	2197	5	BRDT	1	92459667	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	7497618	92459667	156790954	73	26351											
ABCA4	24	broad.mit.edu	37	chr1	94473873	94473873	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaagatacgaagaaacCggactgagaactgagacagg	12	8	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94473873	T	T	94473873	1	4	10	0	1	0	0	0	0	0	0	0	34	667	23	4		4	ABCA4	1	94473873	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2014206	94473873	154776748	74	26352											
FRRS1	391059	broad.mit.edu	37	chr1	100206567	100206567	+	Intron	DEL	A	-	-													tcagatcaaaacgttaaaggAaaaaaaaaagaaagactaaa							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100206567	-	-	100206567	6	5	10	0	1	1	0	1	0	0	0	0	6120	261	9	0		0	FRRS1	1	100206567	Intron	DEL	A	TCGA-05-4397-01A-01D-1265-08	5732694	100206567	149044054	75	26353											
DBT	1629	broad.mit.edu	37	chr1	100696436	100696436	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgaacttcacagatgctatCaaactgagacactgtatctc	6	10	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100696436	G	G	100696436	3	3	10	1	0	0	0	0	1	0	0	0	4291	826	29	4	1194	4	DBT	1	100696436	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	489869	100696436	148554185	76	26354											
SLC30A7	148867	broad.mit.edu	37	chr1	101376791	101376791	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatatatgtaagtttttttCaactattattaaatattgtg	5	2	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101376791	G	G	101376791	1	3	10	0	1	0	0	0	0	0	0	0	14674	841	29	4		4	SLC30A7	1	101376791	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	680355	101376791	147873830	77	26355											
OLFM3	118427	broad.mit.edu	37	chr1	102302475	102302476	+	Frame_Shift_Ins	INS	-	G	G													ttgcctgcttttggcatcccINSgggaacacaggttttgttct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102302476	G	G	102302475	7	5	10	1	0	1	1	0	0	0	0	0	10949	652	23	0	1220	0	OLFM3	1	102302475	Frame_Shift_Ins	INS	-	TCGA-05-4397-01A-01D-1265-08	925684	102302475	146948146	78	26356											
COL11A1	1301	broad.mit.edu	37	chr1	103548353	103548353	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaataataataataaagtGaatatacctggaaataactg	5	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103548353	C	C	103548353	1	2	10	0	1	0	0	0	0	0	0	0	3699	1305	45	4		4	COL11A1	1	103548353	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1245878	103548353	145702268	79	26357											
NTNG1	22854	broad.mit.edu	37	chr1	107961191	107961191	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacataccctgatttttcctGatgcgtgcagatcctccaaa	6	12	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107961191	T	T	107961191	1	4	10	0	1	0	0	0	0	0	0	0	10799	1305	45	3		3	NTNG1	1	107961191	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4412838	107961191	141289430	80	26358											
GSTM2	2946	broad.mit.edu	37	chr1	110212186	110212186	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaactctgctatgaccCagattttgtaagtcccccca	7	14	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110212186	T	T	110212186	3	4	10	1	0	0	0	0	1	0	0	0	6904	594	21	4	371	4	GSTM2	1	110212186	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2250995	110212186	139038435	81	26359											
AMPD1	270	broad.mit.edu	37	chr1	115218017	115218017	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgaagaaaaaagttaagaGaaagaaatttctgatttggg	10	2	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115218017	T	T	115218017	1	4	10	0	1	0	0	0	0	0	0	0	585	957	33	3		3	AMPD1	1	115218017	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	5005831	115218017	134032604	82	26360											
TTF2	8458	broad.mit.edu	37	chr1	117602821	117602821	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gattggctgatagcggctagGacgggtgaaggccaagggcg	19	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117602821	T	T	117602821	1	4	10	0	1	0	0	0	0	0	0	0	16845	1189	41	3		3	TTF2	1	117602821	5'Flank	SNP	G	TCGA-05-4397-01A-01D-1265-08	2384804	117602821	131647800	83	26361											
SEC22B	9554	broad.mit.edu	37	chr1	145115775	145115775	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttgtccagtctgtccaaGaaataccgccaggatgcgaa	9	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145115775	C	C	145115775	3	2	10	1	0	0	0	0	1	0	0	0	14102	933	33	4	552	4	SEC22B	1	145115775	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	27512954	145115775	104134846	84	26362											
CHD1L	9557	broad.mit.edu	37	chr1	146758077	146758078	+	Missense_Mutation	DNP	GG	AT	AT													gaagagagctctgctgagctGgattaccaagacccagatgc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	146758078	AT	AT	146758077	3	1	10	1	0	0	0	0	1	0	0	0	3355	1335	47	4	2191	4	CHD1L	1	146758077	Missense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	1642302	146758077	102492544	85	26363											
NBPF14	25832	broad.mit.edu	37	chr1	148012569	148012569	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaacttccatagggctGgcaggagtcaggctgttcaa	13	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148012569	A	A	148012569	4	1	10	1	0	0	0	0	0	1	0	0	10289	1357	47	4	1419	4	NBPF14	1	148012569	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1254492	148012569	101238052	86	26364											
HIST2H2BE	8349	broad.mit.edu	37	chr1	149857921	149857921	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctggatctcgcgggatgtGatggtggagcgcttgttgta	17	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149857921	T	T	149857921	2	4	10	1	0	0	0	0	0	0	0	1	7246	1280	45	3		3	HIST2H2BE	1	149857921	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1845352	149857921	99392700	87	26365											
OTUD7B	56957	broad.mit.edu	37	chr1	149915923	149915923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggccccggagacctccagCccatccatctggctcagggg	12	16	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149915923	A	A	149915923	3	1	10	1	0	0	0	0	1	0	0	0	11413	739	26	3	170	3	OTUD7B	1	149915923	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	58002	149915923	99334698	88	26366											
VPS45	11311	broad.mit.edu	37	chr1	150039852	150039852	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagacccggccaacagactGggggttaatttagccagaaa	12	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150039852	T	T	150039852	1	4	10	0	1	0	0	0	0	0	0	0	17338	1363	47	2		2	VPS45	1	150039852	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	123929	150039852	99210769	89	26367											
HORMAD1	84072	broad.mit.edu	37	chr1	150681264	150681264	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacatcttgatggttaatTggggatgtccccgcagtttc	11	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150681264	C	C	150681264	1	2	10	0	1	0	0	0	0	0	0	0	7353	1827	63	5		5	HORMAD1	1	150681264	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	641412	150681264	98569357	90	26368											
SEMA6C	10500	broad.mit.edu	37	chr1	151107505	151107505	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctggttgctgcccaccttCagaatgcttgaggtacctag	10	13	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151107505	T	T	151107505	1	4	10	0	1	0	0	0	0	0	0	0	14154	841	29	4		4	SEMA6C	1	151107505	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	426241	151107505	98143116	91	26369											
S100A10	6281	broad.mit.edu	37	chr1	151958812	151958812	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttattttttttaaattgaaaGataaaattgtatgtatttaa	4	0	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151958812	C	C	151958812	1	2	10	0	1	0	0	0	0	0	0	0	13883	957	33	4		4	S100A10	1	151958812	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	851307	151958812	97291809	92	26370											
TCHHL1	126637	broad.mit.edu	37	chr1	152057805	152057805	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacagaacagggctcttggtCtctctgcatctgcttttcaa	8	12	5	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152057805	A	A	152057805	3	1	10	1	0	0	0	0	1	0	0	0	15823	913	32	3	365	3	TCHHL1	1	152057805	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	98993	152057805	97192816	93	26371											
RPTN	126638	broad.mit.edu	37	chr1	152128437	152128437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttgtgtgtctggctgacCatagtgggaactctgacctt	11	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152128437	A	A	152128437	3	1	10	1	0	0	0	0	1	0	0	0	13775	594	21	2	1220	2	RPTN	1	152128437	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	70632	152128437	97122184	94	26372											
HRNR	388697	broad.mit.edu	37	chr1	152187577	152187577	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggaatggccagatccagaCccttgtcggccgtggcccga	15	13	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152187577	G	G	152187577	2	3	10	1	0	0	0	0	0	0	0	1	7426	494	18	4		4	HRNR	1	152187577	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	59140	152187577	97063044	95	26373											
FLG2	388698	broad.mit.edu	37	chr1	152326311	152326311	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtctagtggtatctcctctCtgtccatgagtagttccttg	9	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152326311	T	T	152326311	2	4	10	1	0	0	0	0	0	0	0	1	5980	912	32	4		4	FLG2	1	152326311	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	138734	152326311	96924310	96	26374											
FLG2	388698	broad.mit.edu	37	chr1	152329486	152329486	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagacccaagcttttgttctCtaattcttgactgagtagag	8	8	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152329486	G	G	152329486	3	3	10	1	0	0	0	0	1	0	0	0	5980	913	32	4	6403	4	FLG2	1	152329486	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3175	152329486	96921135	97	26375											
LCE4A	199834	broad.mit.edu	37	chr1	152681469	152681469	+	5'Flank	DEL	A	-	-													ttgggggaggattttaaaatAaaaaaaaatgtaatggctct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152681469	-	-	152681469	6	5	10	0	1	1	0	1	0	0	0	0	8746	377	13	0		0	LCE4A	1	152681469	5'Flank	DEL	A	TCGA-05-4397-01A-01D-1265-08	351983	152681469	96569152	98	26376											
PGLYRP4	57115	broad.mit.edu	37	chr1	153317628	153317628	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccatgtgccgtgggacCcagacccagctcttacttgt	10	14	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153317628	G	G	153317628	1	3	10	0	1	0	0	0	0	0	0	0	11891	638	22	4		4	PGLYRP4	1	153317628	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	636159	153317628	95932993	99	26377											
CRTC2	200186	broad.mit.edu	37	chr1	153925725	153925725	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggttactcccaaccctGggacagggccacttaccccc	8	18	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153925725	A	A	153925725	1	1	10	0	1	0	0	0	0	0	0	0	3932	1363	47	4		4	CRTC2	1	153925725	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	608097	153925725	95324896	100	26378											
AQP10	89872	broad.mit.edu	37	chr1	154295944	154295944	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgggtctatcttggcactCcccaccatccccaactgcct	7	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154295944	T	T	154295944	1	4	10	0	1	0	0	0	0	0	0	0	824	870	30	4		4	AQP10	1	154295944	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	370219	154295944	94954677	101	26379											
TDRD10	126668	broad.mit.edu	37	chr1	154517340	154517340	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gattttggacagttggccacCatccctgtgcagtctctgcg	11	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154517340	G	G	154517340	2	3	10	1	0	0	0	0	0	0	0	1	15853	581	21	4		4	TDRD10	1	154517340	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	221396	154517340	94733281	102	26380											
RAG1AP1	55974	broad.mit.edu	37	chr1	155121291	155121291	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtgctggagatgccagagGaagtgtgtgcatttttgata	15	4	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155121291	T	T	155121291	1	4	10	0	1	0	0	0	0	0	0	0	13112	1189	41	3		3	RAG1AP1	1	155121291	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	603951	155121291	94129330	103	26381											
SCAMP3	10067	broad.mit.edu	37	chr1	155228756	155228756	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtcgagctgtaaggcaCaaaaaaacaggtggacccca	10	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155228756	G	G	155228756	1	3	10	0	1	0	0	0	0	0	0	0	13984	493	17	4		4	SCAMP3	1	155228756	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	107465	155228756	94021865	104	26382											
GON4L	54856	broad.mit.edu	37	chr1	155755039	155755039	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtcagaccccctctcctaGagggagcatcacagagacca	9	15	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155755039	C	C	155755039	1	2	10	0	1	0	0	0	0	0	0	0	6636	957	33	4		4	GON4L	1	155755039	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	526283	155755039	93495582	105	26383											
LMNA	4000	broad.mit.edu	37	chr1	156100423	156100423	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttagcaataccaagaaggaGggtgacctgatagctgctca	11	8	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156100423	A	A	156100423	2	1	10	1	0	0	0	0	0	0	0	1	8922	991	35	4		4	LMNA	1	156100423	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	345384	156100423	93150198	106	26384											
CCT3	7203	broad.mit.edu	37	chr1	156304793	156304793	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaatagggaaaaggggcatGaacaacccacagagtcagtg	13	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156304793	A	A	156304793	1	1	10	0	1	0	0	0	0	0	0	0	2984	1305	45	4		4	CCT3	1	156304793	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	204370	156304793	92945828	107	26385											
IQGAP3	128239	broad.mit.edu	37	chr1	156503678	156503678	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagcaacagctgcaggacgGagaaagaaaaggagatgcag	14	8	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156503678	A	A	156503678	1	1	10	0	1	0	0	0	0	0	0	0	7886	1189	41	4		4	IQGAP3	1	156503678	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	198885	156503678	92746943	108	26386											
IQGAP3	128239	broad.mit.edu	37	chr1	156521478	156521478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctctgatgaccaaccCaaccagccctaacttcacct	4	18	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156521478	A	A	156521478	1	1	10	0	1	0	0	0	0	0	0	0	7886	609	21	2		2	IQGAP3	1	156521478	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	17800	156521478	92729143	109	26387											
BCAN	63827	broad.mit.edu	37	chr1	156617004	156617004	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccagagggagggagggaGggagggaagggaggactctt	22	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156617004	A	A	156617004	1	1	10	0	1	0	0	0	0	0	0	0	1350	1015	35	4		4	BCAN	1	156617004	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	95526	156617004	92633617	110	26388											
INSRR	3645	broad.mit.edu	37	chr1	156813378	156813378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggagggaagttactgaccAcacccccagccttggtcagg	13	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156813378	G	G	156813378	1	3	10	0	1	0	0	0	0	0	0	0	7844	174	6	5		5	INSRR	1	156813378	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	196374	156813378	92437243	111	26389											
PEAR1	375033	broad.mit.edu	37	chr1	156874598	156874598	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcctgctcccctcagagCcctgcgagcggccctgggag	13	17	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156874598	T	T	156874598	3	4	10	1	0	0	0	0	1	0	0	0	11806	739	26	4	166	4	PEAR1	1	156874598	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	61220	156874598	92376023	112	26390											
ARHGEF11	9826	broad.mit.edu	37	chr1	156927399	156927399	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctgagcatcaggggcgtGggcctcatcacccctatgtt	11	14	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156927399	A	A	156927399	1	1	10	0	1	0	0	0	0	0	0	0	898	1363	47	4		4	ARHGEF11	1	156927399	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	52801	156927399	92323222	113	26391											
ETV3L	440695	broad.mit.edu	37	chr1	157062682	157062682	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaggaagccctggaaaaTgccaggcccctgggaggctc	15	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157062682	C	C	157062682	3	2	10	1	0	0	0	0	1	0	0	0	5322	1464	51	5	244	5	ETV3L	1	157062682	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	135283	157062682	92187939	114	26392											
FCRL5	83416	broad.mit.edu	37	chr1	157497838	157497838	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgctgttcactgatgacatGattgtatacctaggaaaccc	8	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157497838	T	T	157497838	1	4	10	0	1	0	0	0	0	0	0	0	5855	1305	45	3		3	FCRL5	1	157497838	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	435156	157497838	91752783	115	26393											
FCRL4	83417	broad.mit.edu	37	chr1	157566094	157566095	+	Intron	DNP	GG	CT	CT													agggtatctagagacataaaGgagcaaagaaaataaggact							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	157566095	CT	CT	157566094	1	2	10	0	1	0	0	0	0	0	0	0	5854	1015	35	4		4	FCRL4	1	157566094	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	68256	157566094	91684527	116	26394											
FCRL3	115352	broad.mit.edu	37	chr1	157665807	157665807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttgcaactcgaggctGtgtgaaaggaatcggaactt	13	8	0	1	rs111735268		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157665807	T	T	157665807	1	4	10	0	1	0	0	0	0	0	0	0	5853	1392	48	3		3	FCRL3	1	157665807	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	99713	157665807	91584814	117	26395											
FCRL2	79368	broad.mit.edu	37	chr1	157718261	157718261	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaataaataaataaataAataaataaagcctctattgc	2	4	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157718261	C	C	157718261	1	2	10	0	1	0	0	0	0	0	0	0	5852	29	1	5		5	FCRL2	1	157718261	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	52454	157718261	91532360	118	26396											
CD5L	922	broad.mit.edu	37	chr1	157801728	157801728	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggcaggcggggccagggGggccaggtcaagcaacacca	19	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157801728	A	A	157801728	1	1	10	0	1	0	0	0	0	0	0	0	3057	1247	43	4		4	CD5L	1	157801728	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	83467	157801728	91448893	119	26397											
CD5L	922	broad.mit.edu	37	chr1	157804200	157804200	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacgcacaggcattaccttCacattcgacccacgtgtctt	8	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157804200	A	A	157804200	4	1	10	1	0	0	0	0	0	1	0	0	3057	835	29	3	340	3	CD5L	1	157804200	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2472	157804200	91446421	120	26398											
OR6Y1	391112	broad.mit.edu	37	chr1	158517172	158517172	+	Frame_Shift_Del	DEL	C	-	-													ggaggcacaggtggagaatgCcttttggcggccctgagcag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158517172	-	-	158517172	7	5	10	1	0	1	0	1	0	0	0	0	11307	739	26	0	255	0	OR6Y1	1	158517172	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08	712972	158517172	90733449	121	26399											
SPTA1	6708	broad.mit.edu	37	chr1	158580966	158580966	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacacacacacgaggccatcTttatcttccacatttgcctg	5	15	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158580966	A	A	158580966	1	1	10	0	1	0	0	0	0	0	0	0	15234	1624	56	5		5	SPTA1	1	158580966	3'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	63794	158580966	90669655	122	26400											
MNDA	4332	broad.mit.edu	37	chr1	158817442	158817442	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtgcatattgcattaacTttgtcatgagactctttctc	7	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158817442	A	A	158817442	1	1	10	0	1	0	0	0	0	0	0	0	9770	1624	56	5		5	MNDA	1	158817442	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	236476	158817442	90433179	123	26401											
MNDA	4332	broad.mit.edu	37	chr1	158817714	158817714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttcatcaaggtgggaaCtggatagaggagaatgagtt	14	5	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158817714	A	A	158817714	1	1	10	0	1	0	0	0	0	0	0	0	9770	580	20	3		3	MNDA	1	158817714	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	272	158817714	90432907	124	26402											
PYHIN1	149628	broad.mit.edu	37	chr1	158906820	158906820	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacttaatccaaaaatgaaAgaagagtatgacaaaattca	5	5	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158906820	T	T	158906820	3	4	10	1	0	0	0	0	1	0	0	0	12973	69	3	5	122	5	PYHIN1	1	158906820	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	89106	158906820	90343801	125	26403											
PYHIN1	149628	broad.mit.edu	37	chr1	158913640	158913640	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataaaacaggaagtatggctGtagtaggaaaaggagaatgc	13	3	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158913640	C	C	158913640	3	2	10	1	0	0	0	0	1	0	0	0	12973	1377	48	4	1081	4	PYHIN1	1	158913640	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	6820	158913640	90336981	126	26404											
PYHIN1	149628	broad.mit.edu	37	chr1	158913661	158913661	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtaggaaaaggagaatgcCacaatatcccctgtgaaaaa	9	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158913661	G	G	158913661	3	3	10	1	0	0	0	0	1	0	0	0	12973	594	21	4	1102	4	PYHIN1	1	158913661	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	21	158913661	90336960	127	26405											
FCER1A	2205	broad.mit.edu	37	chr1	159277563	159277563	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgagaagtactggctacaAttttttatcccattgttggt	9	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159277563	G	G	159277563	2	3	10	1	0	0	0	0	0	0	0	1	5831	98	4	5		5	FCER1A	1	159277563	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	363902	159277563	89973058	128	26406											
CCDC19	25790	broad.mit.edu	37	chr1	159847125	159847126	+	Intron	INS	-	A	A													aaaagtagagggaagtcgagINSactaagcaggtacctgttct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159847126	A	A	159847125	6	5	10	0	1	1	1	0	0	0	0	0	2822	957	33	0		0	CCDC19	1	159847125	Intron	INS	-	TCGA-05-4397-01A-01D-1265-08	569562	159847125	89403496	129	26407											
LY9	4063	broad.mit.edu	37	chr1	160783548	160783548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttctgtacagctggaccCcaagggaaccccatgcttct	10	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160783548	A	A	160783548	3	1	10	1	0	0	0	0	1	0	0	0	9189	623	22	2	719	2	LY9	1	160783548	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	936423	160783548	88467073	130	26408											
LY9	4063	broad.mit.edu	37	chr1	160783712	160783712	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctgtacaggtaactggctCcaacttggcccttgagggaa	11	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160783712	G	G	160783712	1	3	10	0	1	0	0	0	0	0	0	0	9189	870	30	4		4	LY9	1	160783712	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	164	160783712	88466909	131	26409											
KLHDC9	126823	broad.mit.edu	37	chr1	161069200	161069200	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgcggccctgctccaaactCctggaccccatccaggtcat	9	17	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161069200	G	G	161069200	3	3	10	1	0	0	0	0	1	0	0	0	8435	855	30	4	598	4	KLHDC9	1	161069200	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	285488	161069200	88181421	132	26410											
ADAMTS4	9507	broad.mit.edu	37	chr1	161160829	161160830	+	3'UTR	DNP	CC	AA	AA													tctcacgcccacagcccctcCccactgagtcttagcatgag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	161160830	AA	AA	161160829	1	1	10	0	1	0	0	0	0	0	0	0	268	638	22	2		2	ADAMTS4	1	161160829	3'UTR	DNP	CC	TCGA-05-4397-01A-01D-1265-08	91629	161160829	88089792	133	26411											
NDUFS2	4720	broad.mit.edu	37	chr1	161180085	161180085	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attaacacaccagttttcttGatcaatagttgctgaccaac	5	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161180085	C	C	161180085	1	2	10	0	1	0	0	0	0	0	0	0	10387	1305	45	4		4	NDUFS2	1	161180085	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	19256	161180085	88070536	134	26412											
NUF2	83540	broad.mit.edu	37	chr1	163297217	163297217	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataatattgtatggtaatgAtgatagtgacatagctttag	9	2	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163297217	G	G	163297217	1	3	10	0	1	0	0	0	0	0	0	0	10842	348	12	5		5	NUF2	1	163297217	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2117132	163297217	85953404	135	26413											
ALDH9A1	223	broad.mit.edu	37	chr1	165651442	165651442	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtggttctcttctggtaTaaccaaacgatccacctggg	9	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165651442	C	C	165651442	3	2	10	1	0	0	0	0	1	0	0	0	506	1406	49	5	1094	5	ALDH9A1	1	165651442	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2354225	165651442	83599179	136	26414											
ALDH9A1	223	broad.mit.edu	37	chr1	165667628	165667628	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagttaccggttgctggctcGaaagctttctcggtaccgga	12	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165667628	A	A	165667628	2	1	10	1	0	0	0	0	0	0	0	1	506	1049	37	4		4	ALDH9A1	1	165667628	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	16186	165667628	83582993	137	26415											
MAEL	84944	broad.mit.edu	37	chr1	166962240	166962240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaactgttaggaattaGgtgttgacaaagggtttttt	11	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166962240	T	T	166962240	1	4	10	0	1	0	0	0	0	0	0	0	9242	1015	35	2		2	MAEL	1	166962240	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1294612	166962240	82288381	138	26416											
ADCY10	55811	broad.mit.edu	37	chr1	167780114	167780114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccttgggcaaaagacagGgccagtggtattttgagcca	14	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167780114	T	T	167780114	3	4	10	1	0	0	0	0	1	0	0	0	293	1232	43	2	321	2	ADCY10	1	167780114	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	817874	167780114	81470507	139	26417											
SELP	6403	broad.mit.edu	37	chr1	169572376	169572376	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgacatgtggatttataActggaacttccaagaggttg	10	5	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169572376	G	G	169572376	2	3	10	1	0	0	0	0	0	0	0	1	14132	40	2	5		5	SELP	1	169572376	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	1792262	169572376	79678245	140	26418											
C1orf129	80133	broad.mit.edu	37	chr1	170965850	170965850	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttctccaacttccttcaaTaagccatgcgggaacaagat	6	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170965850	A	A	170965850	1	1	10	0	1	0	0	0	0	0	0	0	2016	1421	49	5		5	C1orf129	1	170965850	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1393474	170965850	78284771	141	26419											
FMO1	2326	broad.mit.edu	37	chr1	171244728	171244728	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtctgggaatgaattcctAtggctgttccattaaatagt	10	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171244728	G	G	171244728	1	3	10	0	1	0	0	0	0	0	0	0	6012	464	16	5		5	FMO1	1	171244728	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	278878	171244728	78005893	142	26420											
METTL13	51603	broad.mit.edu	37	chr1	171765473	171765473	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccatctgcctttctatgCtgtgtattctctgcaaactc	5	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171765473	G	G	171765473	1	3	10	0	1	0	0	0	0	0	0	0	9590	812	28	4		4	METTL13	1	171765473	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	520745	171765473	77485148	143	26421											
ANKRD45	339416	broad.mit.edu	37	chr1	173616266	173616266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaattactgtgggccaggCactattctaactgtcttaca	7	10	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173616266	A	A	173616266	1	1	10	0	1	0	0	0	0	0	0	0	673	725	25	3		3	ANKRD45	1	173616266	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1850793	173616266	75634355	144	26422											
RC3H1	149041	broad.mit.edu	37	chr1	173916443	173916443	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgatagtaaatggagagCaggggtaatgctgaaagtca	13	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173916443	G	G	173916443	1	3	10	0	1	0	0	0	0	0	0	0	13274	725	25	4		4	RC3H1	1	173916443	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	300177	173916443	75334178	145	26423											
TNR	7143	broad.mit.edu	37	chr1	175334239	175334239	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggctggttgcaggcccaTcaggacagcatgcctcttgg	14	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334239	A	A	175334239	3	1	10	1	0	0	0	0	1	0	0	0	16461	1435	50	5	1630	5	TNR	1	175334239	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1417796	175334239	73916382	146	26424											
RFWD2	64326	broad.mit.edu	37	chr1	176104034	176104034	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatttctagatcatgaccaAagtaatttctcaggggtttc	7	8	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176104034	C	C	176104034	1	2	10	0	1	0	0	0	0	0	0	0	13368	29	1	5		5	RFWD2	1	176104034	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	769795	176104034	73146587	147	26425											
PAPPA2	60676	broad.mit.edu	37	chr1	176525345	176525345	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttggtctgtgaacaaaacAgtttccctggtgactgcaaa	10	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176525345	G	G	176525345	1	3	10	0	1	0	0	0	0	0	0	0	11527	203	7	5		5	PAPPA2	1	176525345	5'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	421311	176525345	72725276	148	26426											
PAPPA2	60676	broad.mit.edu	37	chr1	176564507	176564507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgaactgtgagcccagCaagattggcaatgaccattg	11	9	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176564507	A	A	176564507	3	1	10	1	0	0	0	0	1	0	0	0	11527	709	25	3	1773	3	PAPPA2	1	176564507	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	39162	176564507	72686114	149	26427											
PAPPA2	60676	broad.mit.edu	37	chr1	176709119	176709120	+	Missense_Mutation	DNP	CC	AT	AT													tctccgtttatcttcaggaaCctatggactgtcatgccagc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	176709120	AT	AT	176709119	3	1	10	1	0	0	0	0	1	0	0	0	11527	507	18	3	4041	3	PAPPA2	1	176709119	Missense_Mutation	DNP	CC	TCGA-05-4397-01A-01D-1265-08	144612	176709119	72541502	150	26428											
FAM5B	57795	broad.mit.edu	37	chr1	177249996	177249996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcaacaagtacaagcctGggctggtgcacgtgatgttg	14	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177249996	T	T	177249996	3	4	10	1	0	0	0	0	1	0	0	0	5644	1348	47	2	1710	2	FAM5B	1	177249996	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	540877	177249996	72000625	151	26429											
C1orf125	126859	broad.mit.edu	37	chr1	179417427	179417427	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagtgctagcatattgaaaGagtttgttagagctgttgaa	11	4	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179417427	A	A	179417427	1	1	10	0	1	0	0	0	0	0	0	0	2013	957	33	4		4	C1orf125	1	179417427	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2167431	179417427	69833194	152	26430											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179815333	179815333	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaggaggtgggagtgtcaGagttggtaaacttggcccag	17	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179815333	A	A	179815333	3	1	10	1	0	0	0	0	1	0	0	0	16497	942	33	4	130	4	TOR1AIP2	1	179815333	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	397906	179815333	69435288	153	26431											
CACNA1E	777	broad.mit.edu	37	chr1	181745256	181745256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctcaacctgtttgtggCcgtcatcatggacaactttg	10	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181745256	A	A	181745256	3	1	10	1	0	0	0	0	1	0	0	0	2568	739	26	3	5309	3	CACNA1E	1	181745256	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1929923	181745256	67505365	154	26432											
GLUL	2752	broad.mit.edu	37	chr1	182355522	182355522	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattatccgtttacaggtgTgcctcaaattggtctctaga	8	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182355522	A	A	182355522	3	1	10	1	0	0	0	0	1	0	0	0	6542	1696	59	5	793	5	GLUL	1	182355522	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	610266	182355522	66895099	155	26433											
RGS8	85397	broad.mit.edu	37	chr1	182615882	182615882	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctgaggtctaactgagcctCctctggctttgggacagcag	12	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182615882	G	G	182615882	3	3	10	1	0	0	0	0	1	0	0	0	13421	854	30	4	15	4	RGS8	1	182615882	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	260360	182615882	66634739	156	26434											
LAMC1	3915	broad.mit.edu	37	chr1	183099634	183099634	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaacacagagcggttgattGaaatcgcatccagagaactt	10	8	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183099634	A	A	183099634	3	1	10	1	0	0	0	0	1	0	0	0	8686	1291	45	4	3510	4	LAMC1	1	183099634	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	483752	183099634	66150987	157	26435											
NMNAT2	23057	broad.mit.edu	37	chr1	183259340	183259340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcactcccaagggtccaCcctaacatcatcggaaagaa	8	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183259340	A	A	183259340	3	1	10	1	0	0	0	0	1	0	0	0	10594	521	18	3	711	3	NMNAT2	1	183259340	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	159706	183259340	65991281	158	26436											
SMG7	9887	broad.mit.edu	37	chr1	183518771	183518771	+	Intron	DEL	A	-	-													aaattgaaacaaaaagaaatAaaagccttcaaaatttctct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	183518771	-	-	183518771	6	5	10	0	1	1	0	1	0	0	0	0	14912	377	13	0		0	SMG7	1	183518771	Intron	DEL	A	TCGA-05-4397-01A-01D-1265-08	259431	183518771	65731850	159	26437											
NCF2	4688	broad.mit.edu	37	chr1	183536234	183536234	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggatgacgaacagacaaaaGaacttggctggtctgcaaag	13	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183536234	C	C	183536234	1	2	10	0	1	0	0	0	0	0	0	0	10312	957	33	4		4	NCF2	1	183536234	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	17463	183536234	65714387	160	26438											
EDEM3	80267	broad.mit.edu	37	chr1	184688331	184688331	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttttttaatcacctgatAtaacatttcatgagtttcaa	5	6	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184688331	C	C	184688331	3	2	10	1	0	0	0	0	1	0	0	0	4953	449	16	5	1712	5	EDEM3	1	184688331	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1152097	184688331	64562290	161	26439											
RNF2	6045	broad.mit.edu	37	chr1	185067546	185067546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtaaaaggcagtcttGtataagaagtaggagcaata	13	3	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185067546	T	T	185067546	1	4	10	0	1	0	0	0	0	0	0	0	13583	1392	48	3		3	RNF2	1	185067546	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	379215	185067546	64183075	162	26440											
TPR	7175	broad.mit.edu	37	chr1	186306192	186306192	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtgattttgattttgtttCagcttggttgagcgtttctt	10	4	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186306192	A	A	186306192	4	1	10	1	0	0	0	0	0	1	0	0	16540	835	29	3	2712	3	TPR	1	186306192	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1238646	186306192	62944429	163	26441											
PLA2G4A	5321	broad.mit.edu	37	chr1	186901923	186901923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagccatattgggttcagGtgggggtttccgagccatgg	17	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186901923	T	T	186901923	3	4	10	1	0	0	0	0	1	0	0	0	12096	1261	44	3	613	3	PLA2G4A	1	186901923	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	595731	186901923	62348698	164	26442											
FAM5C	339479	broad.mit.edu	37	chr1	190067209	190067209	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaatttggcattaaacgccTgcagagcagattggatcctc	10	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190067209	G	G	190067209	3	3	10	1	0	0	0	0	1	0	0	0	5645	1580	55	5	64	5	FAM5C	1	190067209	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	3165286	190067209	59183412	165	26443											
RGS18	64407	broad.mit.edu	37	chr1	192153479	192153479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaacagcatcactcaacCtaccctccacagttttgatg	4	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192153479	A	A	192153479	3	1	10	1	0	0	0	0	1	0	0	0	13409	681	24	2	521	2	RGS18	1	192153479	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2086270	192153479	57097142	166	26444											
TROVE2	6738	broad.mit.edu	37	chr1	193053901	193053901	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagatccattgccatcaGtgatctcactaaaaatatac	5	11	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193053901	T	T	193053901	1	4	10	0	1	0	0	0	0	0	0	0	16701	1044	36	3		3	TROVE2	1	193053901	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	900422	193053901	56196720	167	26445											
CFH	3075	broad.mit.edu	37	chr1	196714946	196714946	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatgaaatgatgttttttaGattctacaggaaaatgtggg	11	2	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196714946	T	T	196714946	5	4	10	1	0	0	0	0	0	0	1	0	3313	956	33	3	3410	3	CFH	1	196714946	Splice_Site	SNP	G	TCGA-05-4397-01A-01D-1265-08	3661045	196714946	52535675	168	26446											
CFHR4	10877	broad.mit.edu	37	chr1	196879388	196879388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgaaacattatttataCtatttttgttttttgttaca	4	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196879388	A	A	196879388	1	1	10	0	1	0	0	0	0	0	0	0	3317	580	20	3		3	CFHR4	1	196879388	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	164442	196879388	52371233	169	26447											
CFHR4	10877	broad.mit.edu	37	chr1	196883639	196883639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagaattttgtgatatgCctgtttttgagaattccaga	8	5	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196883639	A	A	196883639	3	1	10	1	0	0	0	0	1	0	0	0	3317	739	26	3	468	3	CFHR4	1	196883639	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	4251	196883639	52366982	170	26448											
F13B	2165	broad.mit.edu	37	chr1	197030920	197030920	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgattcttataccatgttCtttcctacaggttggttgag	8	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197030920	T	T	197030920	3	4	10	1	0	0	0	0	1	0	0	0	5384	922	32	4	1580	4	F13B	1	197030920	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	147281	197030920	52219701	171	26449											
ASPM	259266	broad.mit.edu	37	chr1	197073145	197073145	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtaacctcatctgctTtcggacaaggtatcctctaa	6	11	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197073145	G	G	197073145	3	3	10	1	0	0	0	0	1	0	0	0	1060	1850	64	5	5241	5	ASPM	1	197073145	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	42225	197073145	52177476	172	26450											
CRB1	23418	broad.mit.edu	37	chr1	197390239	197390239	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccattgcccatttgataaCctttctagaactttttatgg	6	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197390239	G	G	197390239	3	3	10	1	0	0	0	0	1	0	0	0	3880	506	18	4	1303	4	CRB1	1	197390239	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	317094	197390239	51860382	173	26451											
DENND1B	163486	broad.mit.edu	37	chr1	197704783	197704783	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatgaaggtcgagctatgCggtttcagccggtacaaggt	14	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197704783	T	T	197704783	1	4	10	0	1	0	0	0	0	0	0	0	4467	783	27	4		4	DENND1B	1	197704783	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	314544	197704783	51545838	174	26452											
ATP6V1G3	127124	broad.mit.edu	37	chr1	198505804	198505804	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgaacatttctagtcatCttaccagaagcagtcccagt	6	11	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198505804	G	G	198505804	1	3	10	0	1	0	0	0	0	0	0	0	1192	928	32	4		4	ATP6V1G3	1	198505804	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	801021	198505804	50744817	175	26453											
PTPRC	5788	broad.mit.edu	37	chr1	198672411	198672411	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattagcttttattcttctAttcattttcttgcagatgcc	4	8	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198672411	G	G	198672411	1	3	10	0	1	0	0	0	0	0	0	0	12905	464	16	5		5	PTPRC	1	198672411	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	166607	198672411	50578210	176	26454											
CACNA1S	779	broad.mit.edu	37	chr1	201030327	201030327	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctcttccctggctgaacCtagggcttgggccagcagga	12	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201030327	T	T	201030327	1	4	10	0	1	0	0	0	0	0	0	0	2573	696	24	4		4	CACNA1S	1	201030327	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2357916	201030327	48220294	177	26455											
CYB5R1	51706	broad.mit.edu	37	chr1	202936196	202936196	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgggatcgggaccccagcaTccacggtgggcccagagccc	15	16	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202936196	C	C	202936196	1	2	10	0	1	0	0	0	0	0	0	0	4159	1450	50	5		5	CYB5R1	1	202936196	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1905869	202936196	46314425	178	26456											
TMEM183A	92703	broad.mit.edu	37	chr1	202984222	202984222	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatctgtgtggctgatttcAttactgtttgtgatttggag	11	4	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202984222	G	G	202984222	1	3	10	0	1	0	0	0	0	0	0	0	16225	232	8	5		5	TMEM183A	1	202984222	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	48026	202984222	46266399	179	26457											
PPFIA4	8497	broad.mit.edu	37	chr1	203013218	203013218	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaccacaaggccctggatGagaaggtgcccacctgcccg	12	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203013218	A	A	203013218	3	1	10	1	0	0	0	0	1	0	0	0	12408	1305	45	4		4	PPFIA4	1	203013218	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	28996	203013218	46237403	180	26458											
FMOD	2331	broad.mit.edu	37	chr1	203224961	203224961	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtggataatgatgaaaatGagcaccagttatctttaata	9	4	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203224961	A	A	203224961	1	1	10	0	1	0	0	0	0	0	0	0	6017	1305	45	4		4	FMOD	1	203224961	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	211743	203224961	46025660	181	26459											
OPTC	26254	broad.mit.edu	37	chr1	203472096	203472096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacctgctggattctatcCcggggcctttgcccctgagc	10	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203472096	A	A	203472096	3	1	10	1	0	0	0	0	1	0	0	0	10982	623	22	2	805	2	OPTC	1	203472096	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	247135	203472096	45778525	182	26460											
SLC26A9	115019	broad.mit.edu	37	chr1	205884139	205884139	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgtttttggctcactcGtaaaagctggaagtcaaggt	10	8	3	0	rs147712135		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205884139	T	T	205884139	1	4	10	0	1	0	0	0	0	0	0	0	14638	1153	40	3		3	SLC26A9	1	205884139	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	2412043	205884139	43366482	183	26461											
SLC26A9	115019	broad.mit.edu	37	chr1	205892626	205892626	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagcaacctcttcttggGgtggtgcagagcaaaagaag	12	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205892626	A	A	205892626	1	1	10	0	1	0	0	0	0	0	0	0	14638	1247	43	4		4	SLC26A9	1	205892626	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	8487	205892626	43357995	184	26462											
AVPR1B	553	broad.mit.edu	37	chr1	206225092	206225092	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtgaccatgctcacggccTgctacagcctcatctgccat	9	16	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206225092	C	C	206225092	3	2	10	1	0	0	0	0	1	0	0	0	1237	1580	55	5	654	5	AVPR1B	1	206225092	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	332466	206225092	43025529	185	26463											
LGTN	1939	broad.mit.edu	37	chr1	206776687	206776687	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagtggccaggagggggcaGagagcctgtgccctcatctc	17	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206776687	A	A	206776687	1	1	10	0	1	0	0	0	0	0	0	0	8832	957	33	4		4	LGTN	1	206776687	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	551595	206776687	42473934	186	26464											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209933482	209933482	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagagatccgtgaaagccGccgctgccgtcccaatgtga	12	13	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209933482	A	A	209933482	3	1	10	1	0	0	0	0	1	0	0	0	16566	1087	38	4	100	4	TRAF3IP3	1	209933482	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3156795	209933482	39317139	187	26465											
KCNH1	3756	broad.mit.edu	37	chr1	211034812	211034812	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccatatctttcaaaaagtCttgctaaaatatgtaaggcc	5	8	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211034812	A	A	211034812	1	1	10	0	1	0	0	0	0	0	0	0	8101	928	32	3		3	KCNH1	1	211034812	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1101330	211034812	38215809	188	26466											
ATF3	467	broad.mit.edu	37	chr1	212788263	212788263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgggacttttctctgaGggtggggctctggtgttgga	16	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212788263	T	T	212788263	1	4	10	0	1	0	0	0	0	0	0	0	1085	1015	35	2		2	ATF3	1	212788263	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1753451	212788263	36462358	189	26467											
FAM71A	149647	broad.mit.edu	37	chr1	212798729	212798750	+	Frame_Shift_Del	DEL	AATTTACCTCTTGCGGCCACCC	-	-													tttgcctattgggaaaaactAatttacctcttgcggccacc					rs138522825		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	212798750	-	-	212798729	7	5	10	1	0	1	0	1	0	0	0	0	5658	349	13	0	512	0	FAM71A	1	212798729	Frame_Shift_Del	DEL	AATTTACCTCTTGCGGCCACCC	TCGA-05-4397-01A-01D-1265-08	10466	212798729	36451892	190	26468											
CENPF	1063	broad.mit.edu	37	chr1	214814818	214814818	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtcaaaaatacaaagcagCacaggaaaagaattctaaat	6	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214814818	T	T	214814818	3	4	10	1	0	0	0	0	1	0	0	0	3261	710	25	4	3179	4	CENPF	1	214814818	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2016089	214814818	34435803	191	26469			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214815414	214815414	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacagacaattagaggagatCttgaaaccagcaatttgcaa	8	7	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214815414	T	T	214815414	3	4	10	1	0	0	0	0	1	0	0	0	3261	913	32	4	3775	4	CENPF	1	214815414	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	596	214815414	34435207	192	26470			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214818275	214818275	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgagaatttgagattacttCatgtgatagaggaccgtgac	11	5	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214818275	T	T	214818275	3	4	10	1	0	0	0	0	1	0	0	0	3261	826	29	4	5408	4	CENPF	1	214818275	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2861	214818275	34432346	193	26471			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214818772	214818772	+	Silent	SNP	C	T	T													gtctgccttgaagaagaactCtcagtggtcacaagtgagag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214818772	T	T	214818772	2	4	10	1	0	0	0	0	0	0	0	1	3261	900	32	4		4	CENPF	1	214818772	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	497	214818772	34431849	194	26472	172	2	1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214818774	214818774	+	Missense_Mutation	SNP	C	T	T													ctgccttgaagaagaactctCagtggtcacaagtgagagaa							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214818774	T	T	214818774	3	4	10	1	0	0	0	0	1	0	0	0	3261	838	29	4	5907	4	CENPF	1	214818774	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2	214818774	34431847	195	26473	172	2	1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214818975	214818975	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actccttcagactttgtcctCtgatgtgagtgagctgttaa	9	9	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214818975	G	G	214818975	3	3	10	1	0	0	0	0	1	0	0	0	3261	913	32	4	6108	4	CENPF	1	214818975	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	201	214818975	34431646	196	26474			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214819044	214819044	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagagtttggaaaaggactCacaggcactgtctttgacaa	11	8	2	2	rs7533166	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214819044	G	G	214819044	4	3	10	1	0	0	0	0	0	1	0	0	3261	838	29	4	6177	4	CENPF	1	214819044	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	69	214819044	34431577	197	26475			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214819658	214819658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggagcaagcagagataCagatcaaagaagaatctaaa	9	5	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214819658	A	A	214819658	3	1	10	1	0	0	0	0	1	0	0	0	3261	479	17	3	6791	3	CENPF	1	214819658	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	614	214819658	34430963	198	26476			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214821965	214821965	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgtatcagagtggtcgatCtgatcaaaacagaccaccaa	9	9	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214821965	T	T	214821965	1	4	10	0	1	0	0	0	0	0	0	0	3261	928	32	4		4	CENPF	1	214821965	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2307	214821965	34428656	199	26477			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214825149	214825149	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaggaagggaaagtgagaGaggaaatagctgaatatcag	14	2	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214825149	C	C	214825149	3	2	10	1	0	0	0	0	1	0	0	0	3261	943	33	4	8134	4	CENPF	1	214825149	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3184	214825149	34425472	200	26478			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214826243	214826243	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtctcagttcacagaagctgGagatagaccttttaaagtct	9	8	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214826243	A	A	214826243	3	1	10	1	0	0	0	0	1	0	0	0	3261	1175	41	4	8291	4	CENPF	1	214826243	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1094	214826243	34424378	201	26479			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214830356	214830356	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcttgaagaaaaaaccaagGaggcagatgaatacttggat	10	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214830356	A	A	214830356	3	1	10	1	0	0	0	0	1	0	0	0	3261	1175	41	4	8632	4	CENPF	1	214830356	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4113	214830356	34420265	202	26480			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214830542	214830542	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccaatcccttctgttactGaaaagaggttatcatctggc	7	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214830542	A	A	214830542	3	1	10	1	0	0	0	0	1	0	0	0	3261	1291	45	4	8818	4	CENPF	1	214830542	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	186	214830542	34420079	203	26481			1	26		14	13	17352	N	G_C	1.531529e-09
CENPF	1063	broad.mit.edu	37	chr1	214832169	214832169	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattggacctagcagtgctGacagttattttttttgccct	9	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214832169	T	T	214832169	1	4	10	0	1	0	0	0	0	0	0	0	3261	1305	45	3		3	CENPF	1	214832169	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1627	214832169	34418452	204	26482			1	26		14	13	17352	N	G_C	1.531529e-09
USH2A	7399	broad.mit.edu	37	chr1	216019485	216019485	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaagtttagagagccTttgttttggaaatgttaaaa	9	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216019485	C	C	216019485	1	2	10	0	1	0	0	0	0	0	0	0	17162	1624	56	5		5	USH2A	1	216019485	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1187316	216019485	33231136	205	26483											
USH2A	7399	broad.mit.edu	37	chr1	216062335	216062336	+	Missense_Mutation	DNP	GG	TT	TT													gattttctaggatgctgccaGgtgaccaacatcattcttga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	216062336	TT	TT	216062335	3	4	10	1	0	0	0	0	1	0	0	0	17162	987	35	2	8080	2	USH2A	1	216062335	Missense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	42850	216062335	33188286	206	26484											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220427267	220427267	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaacaaacagaaaacacctgGaaatggagatggtggcagta	12	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220427267	A	A	220427267	1	1	10	0	1	0	0	0	0	0	0	0	13044	1189	41	4		4	RAB3GAP2	1	220427267	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4364932	220427267	28823354	207	26485											
LEFTY2	7044	broad.mit.edu	37	chr1	226128626	226128626	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacctctttccgcgggagCggtccccgtggctgcgccgc	14	16	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226128626	T	T	226128626	3	4	10	1	0	0	0	0	1	0	0	0	8788	768	27	4	901	4	LEFTY2	1	226128626	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5701359	226128626	23121995	208	26486											
OBSCN	84033	broad.mit.edu	37	chr1	228481316	228481316	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagccatgctcaccgtcagGggtaaaggccacatgcagcc	11	14	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228481316	C	C	228481316	3	2	10	1	0	0	0	0	1	0	0	0	10907	1246	43	4	11288	4	OBSCN	1	228481316	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2352690	228481316	20769305	209	26487											
OBSCN	84033	broad.mit.edu	37	chr1	228492083	228492083	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccacactgcactgtgaactGagcaaggtggcccctgtgga	13	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228492083	A	A	228492083	1	1	10	0	1	0	0	0	0	0	0	0	10907	1305	45	4		4	OBSCN	1	228492083	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	10767	228492083	20758538	210	26488											
CAPN9	10753	broad.mit.edu	37	chr1	230883330	230883330	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actcctcaggccagagctttGagcaaatgaggcaggagtgc	13	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230883330	C	C	230883330	3	2	10	1	0	0	0	0	1	0	0	0	2658	1291	45	4	90	4	CAPN9	1	230883330	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2391247	230883330	18367291	211	26489											
CAPN9	10753	broad.mit.edu	37	chr1	230931059	230931059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgagggtgcacctcgGggtggcatcttcagtcaccc	15	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230931059	T	T	230931059	1	4	10	0	1	0	0	0	0	0	0	0	2658	1247	43	2		2	CAPN9	1	230931059	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	47729	230931059	18319562	212	26490											
ARV1	64801	broad.mit.edu	37	chr1	231133088	231133088	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagatgtcattgtaaaagaAgtcggtgcccttacataacc	8	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231133088	G	G	231133088	1	3	10	0	1	0	0	0	0	0	0	0	1006	87	3	5		5	ARV1	1	231133088	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	202029	231133088	18117533	213	26491											
C1orf124	83932	broad.mit.edu	37	chr1	231488267	231488267	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatactagttcttcattttGagaaaactgtacattagttt	5	5	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231488267	C	C	231488267	1	2	10	0	1	0	0	0	0	0	0	0	2012	1305	45	4		4	C1orf124	1	231488267	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	355179	231488267	17762354	214	26492											
SLC35F3	148641	broad.mit.edu	37	chr1	234041292	234041292	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcatgaggaggtcacCggacgtcagcccccggagac	15	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234041292	T	T	234041292	3	4	10	1	0	0	0	0	1	0	0	0	14704	652	23	4	77	4	SLC35F3	1	234041292	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2553025	234041292	15209329	215	26493											
HEATR1	55127	broad.mit.edu	37	chr1	236719179	236719179	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agactgatgggaggtgagctCttccttcttcatcaccccaa	9	12	4	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236719179	T	T	236719179	3	4	10	1	0	0	0	0	1	0	0	0	7094	922	32	4	887	4	HEATR1	1	236719179	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2677887	236719179	12531442	216	26494											
HEATR1	55127	broad.mit.edu	37	chr1	236723047	236723047	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtaagctttactaaggagCgcgcgccagaacttcacggt	11	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236723047	A	A	236723047	2	1	10	1	0	0	0	0	0	0	0	1	7094	755	27	3		3	HEATR1	1	236723047	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	3868	236723047	12527574	217	26495											
MTR	4548	broad.mit.edu	37	chr1	236998773	236998773	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggattgctgggaagggtAaggaattacctcattagcct	13	6	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236998773	T	T	236998773	1	4	10	0	1	0	0	0	0	0	0	0	10052	377	13	5		5	MTR	1	236998773	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	275726	236998773	12251848	218	26496											
RYR2	6262	broad.mit.edu	37	chr1	237732601	237732601	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcagaactggctttcaagGactttgatgttggcgatggt	13	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237732601	A	A	237732601	3	1	10	1	0	0	0	0	1	0	0	0	13880	1174	41	4	3694	4	RYR2	1	237732601	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	733828	237732601	11518020	219	26497											
RYR2	6262	broad.mit.edu	37	chr1	237872473	237872473	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcacatgtccttgttcaatCgcttcattcactattttgcc	4	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237872473	A	A	237872473	1	1	10	0	1	0	0	0	0	0	0	0	13880	899	31	3		3	RYR2	1	237872473	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	139872	237872473	11378148	220	26498											
RYR2	6262	broad.mit.edu	37	chr1	237982348	237982348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccagtgctatatgttcCacatgtatgttggagttcgt	9	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237982348	A	A	237982348	3	1	10	1	0	0	0	0	1	0	0	0	13880	594	21	2	14848	2	RYR2	1	237982348	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	109875	237982348	11268273	221	26499											
ZP4	57829	broad.mit.edu	37	chr1	238045820	238045820	+	Frame_Shift_Del	DEL	C	-	-													ggtcccagaaaggcctgccaCccacagaactttcgagtcta							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	238045820	-	-	238045820	7	5	10	1	0	1	0	1	0	0	0	0	18347	507	18	0	101	0	ZP4	1	238045820	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08	63472	238045820	11204801	222	26500											
RGS7	6000	broad.mit.edu	37	chr1	241031872	241031872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggattcaagacgagagtGcgacgcttgcttaccacggg	14	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241031872	T	T	241031872	1	4	10	0	1	0	0	0	0	0	0	0	13419	1334	46	3		3	RGS7	1	241031872	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2986052	241031872	8218749	223	26501											
RGS7	6000	broad.mit.edu	37	chr1	241033460	241033460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgcctgcttatcaacaCcatggcactataagtaaaag	6	10	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241033460	A	A	241033460	1	1	10	0	1	0	0	0	0	0	0	0	13419	522	18	3		3	RGS7	1	241033460	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1588	241033460	8217161	224	26502											
KIF26B	55083	broad.mit.edu	37	chr1	245766260	245766260	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcttttgaattactggtgtCagaccttgggcaggatcagt	12	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	245766260	G	G	245766260	1	3	10	0	1	0	0	0	0	0	0	0	8365	841	29	4		4	KIF26B	1	245766260	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4732800	245766260	3484361	225	26503											
SMYD3	64754	broad.mit.edu	37	chr1	245912968	245912968	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcataatatcaaaagccTaaagagaaaggacggaagag	9	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245912968	A	A	245912968	1	1	10	0	1	0	0	0	0	0	0	0	14937	1536	53	5		5	SMYD3	1	245912968	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	146708	245912968	3337653	226	26504											
TFB2M	64216	broad.mit.edu	37	chr1	246727853	246727853	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttaaatctgacagcatcCgcaaagtagatgtcactctc	6	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246727853	G	G	246727853	1	3	10	0	1	0	0	0	0	0	0	0	15917	667	23	4		4	TFB2M	1	246727853	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	814885	246727853	2522768	227	26505											
ZNF695	57116	broad.mit.edu	37	chr1	247163260	247163260	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctatcctcaccaagggagatCaggtttctgtagttctctaa	8	10	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247163260	G	G	247163260	2	3	10	1	0	0	0	0	0	0	0	1	18225	813	29	4		4	ZNF695	1	247163260	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	435407	247163260	2087361	228	26506											
ZNF669	79862	broad.mit.edu	37	chr1	247263792	247263792	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgactggaacgagtgtAggctttaccgcatttcttac	11	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247263792	T	T	247263792	3	4	10	1	0	0	0	0	1	0	0	0	18203	420	15	5	119	5	ZNF669	1	247263792	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	100532	247263792	1986829	229	26507											
NLRP3	114548	broad.mit.edu	37	chr1	247582246	247582246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagacagagaaggcagaCcatgtggatctagccacgct	13	10	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247582246	A	A	247582246	3	1	10	1	0	0	0	0	1	0	0	0	10573	506	18	3	152	3	NLRP3	1	247582246	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	318454	247582246	1668375	230	26508											
NLRP3	114548	broad.mit.edu	37	chr1	247597474	247597474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcagcagcaaccagaaGctggtggagctggacctgag	14	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247597474	T	T	247597474	3	4	10	1	0	0	0	0	1	0	0	0	10573	962	34	3	2415	3	NLRP3	1	247597474	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	15228	247597474	1653147	231	26509											
OR2C3	81472	broad.mit.edu	37	chr1	247695456	247695456	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcgtagcggtcataggAcatggtggccagcaggacac	16	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247695456	C	C	247695456	3	2	10	1	0	0	0	0	1	0	0	0	11087	275	10	5	608	5	OR2C3	1	247695456	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	97982	247695456	1555165	232	26510											
OR2L13	284521	broad.mit.edu	37	chr1	248186220	248186220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttagagtcaaagcgctaGgttcatatcaactcagcagt	10	8	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248186220	T	T	248186220	1	4	10	0	1	0	0	0	0	0	0	0	11100	1015	35	2		2	OR2L13	1	248186220	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	490764	248186220	1064401	233	26511											
OR2L2	26246	broad.mit.edu	37	chr1	248201677	248201677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttctcattttcctaatGgctctaattggaaatctatc	4	8	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248201677	T	T	248201677	3	4	10	1	0	0	0	0	1	0	0	0	11101	1348	47	2	110	2	OR2L2	1	248201677	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	15457	248201677	1048944	234	26512											
OR2L13	284521	broad.mit.edu	37	chr1	248263048	248263048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctacgaccgttatttggCcatctgccactctctctatt	7	14	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248263048	A	A	248263048	3	1	10	1	0	0	0	0	1	0	0	0	11100	739	26	3	373	3	OR2L13	1	248263048	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	61371	248263048	987573	235	26513											
OR2M3	127062	broad.mit.edu	37	chr1	248366960	248366960	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacacatcaatatttgaaaaGattcttttcatctgctgtat	5	7	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366960	T	T	248366960	3	4	10	1	0	0	0	0	1	0	0	0	11105	933	33	3	593	3	OR2M3	1	248366960	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	103912	248366960	883661	236	26514											
OR2M3	127062	broad.mit.edu	37	chr1	248367211	248367211	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtattctacaccatccTcactcccatgttgaatcccc	4	16	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248367211	G	G	248367211	3	3	10	1	0	0	0	0	1	0	0	0	11105	1551	54	5	844	5	OR2M3	1	248367211	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	251	248367211	883410	237	26515											
OR14C36	127066	broad.mit.edu	37	chr1	248512220	248512220	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcattgtgaccgtcaccacCtgtgacagcagccttcacat	7	15	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248512220	T	T	248512220	2	4	10	1	0	0	0	0	0	0	0	1	11040	668	24	4		4	OR14C36	1	248512220	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	145009	248512220	738401	238	26516											
OR2T6	254879	broad.mit.edu	37	chr1	248551769	248551769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcacacccttattaaaccCtctcatctacagtctgagga	4	15	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248551769	A	A	248551769	3	1	10	1	0	0	0	0	1	0	0	0	11123	681	24	2	862	2	OR2T6	1	248551769	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	39549	248551769	698852	239	26517											
OR2T11	127077	broad.mit.edu	37	chr1	248790328	248790328	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaatttgcagtcacggcCcccaagaaaacagcaaggat	8	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248790328	A	A	248790328	2	1	10	1	0	0	0	0	0	0	0	1	11112	610	22	2		2	OR2T11	1	248790328	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	238559	248790328	460293	240	26518											
OR2T27	403239	broad.mit.edu	37	chr1	248813331	248813331	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggctgtaaatgagtggattGagcatgggagtaaggatggt	17	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248813331	C	C	248813331	2	2	10	1	0	0	0	0	0	0	0	1	11115	1277	45	4		4	OR2T27	1	248813331	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	23003	248813331	437290	241	26519											
PXDN	7837	broad.mit.edu	37	chr2	1658156	1658156	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttgagggtcagcgtgttTacagccccacgatacctgtc	11	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1658156	C	C	1658156	1	2	10	0	1	0	0	0	0	0	0	0	12955	1769	61	5		5	PXDN	2	1658156	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08		1658156	241541217	242	26520											
MYT1L	23040	broad.mit.edu	37	chr2	1926072	1926073	+	Missense_Mutation	DNP	GG	TT	TT													tattacctttaccatagtatGgctttttgacatggctgtca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1926073	TT	TT	1926072	3	4	10	1	0	0	0	0	1	0	0	0	10201	1348	47	2	2149	2	MYT1L	2	1926072	Missense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	267916	1926072	241273301	243	26521											
RNASEH1	246243	broad.mit.edu	37	chr2	3597828	3597828	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagccccaacacgaaccaaaGctgctcctctgccacccctg	6	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3597828	C	C	3597828	1	2	10	0	1	0	0	0	0	0	0	0	13522	986	34	4		4	RNASEH1	2	3597828	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1671756	3597828	239601545	244	26522											
HPCAL1	3241	broad.mit.edu	37	chr2	10560020	10560020	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccggccacctgaccgtggAcgagttcaagaagatctacg	11	13	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10560020	C	C	10560020	3	2	10	1	0	0	0	0	1	0	0	0	7397	275	10	5	139	5	HPCAL1	2	10560020	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	6962192	10560020	232639353	245	26523											
ROCK2	9475	broad.mit.edu	37	chr2	11484214	11484214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgccccgtcccccggcgCggtctcgggggcgccgggca	17	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11484214	A	A	11484214	3	1	10	1	0	0	0	0	1	0	0	0	13629	768	27	3	4249	3	ROCK2	2	11484214	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	924194	11484214	231715159	246	26524											
NBAS	51594	broad.mit.edu	37	chr2	15555687	15555687	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacatctggtttggaatgctGaaatatcttcaggggaaatt	10	5	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15555687	A	A	15555687	4	1	10	1	0	0	0	0	0	1	0	0	10280	1299	45	4	4307	4	NBAS	2	15555687	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4071473	15555687	227643686	247	26525											
FAM49A	81553	broad.mit.edu	37	chr2	16793592	16793592	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgggaggggggaaaagggtGagaggataggaagaaggaag	22	0	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16793592	T	T	16793592	1	4	10	0	1	0	0	0	0	0	0	0	5626	1305	45	3		3	FAM49A	2	16793592	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1237905	16793592	226405781	248	26526											
WDR35	57539	broad.mit.edu	37	chr2	20113375	20113375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtggcttatttcctgagCaaggacaccgtgtttgcata	11	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20113375	A	A	20113375	3	1	10	1	0	0	0	0	1	0	0	0	17416	710	25	3	59	3	WDR35	2	20113375	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3319783	20113375	223085998	249	26527											
HS1BP3	64342	broad.mit.edu	37	chr2	20838458	20838458	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttggtaaccaccccagaGccaggggaggcatcttgcca	12	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20838458	A	A	20838458	1	1	10	0	1	0	0	0	0	0	0	0	7428	986	34	4		4	HS1BP3	2	20838458	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	725083	20838458	222360915	250	26528											
C2orf84	653140	broad.mit.edu	37	chr2	24400919	24400919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatgcccccttcttgcaGgatcactaaaaggtccctga	9	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24400919	T	T	24400919	1	4	10	0	1	0	0	0	0	0	0	0	2221	1015	35	2		2	C2orf84	2	24400919	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3562461	24400919	218798454	251	26529											
HADHB	3032	broad.mit.edu	37	chr2	26507546	26507546	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttcaccatattggtcagGctggtcttgaactcctgacc	10	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26507546	A	A	26507546	1	1	10	0	1	0	0	0	0	0	0	0	7010	1218	42	4		4	HADHB	2	26507546	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2106627	26507546	216691827	252	26530											
GPR113	165082	broad.mit.edu	37	chr2	26534999	26534999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcccacaggactgagccGggggcaatgagaacaacaga	15	11	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26534999	A	A	26534999	1	1	10	0	1	0	0	0	0	0	0	0	6695	1131	39	4		4	GPR113	2	26534999	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	27453	26534999	216664374	253	26531											
CIB4	130106	broad.mit.edu	37	chr2	26806683	26806683	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtgaggtccatcaggaggtCctcagacatgtcatcactgt	11	11	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806683	T	T	26806683	3	4	10	1	0	0	0	0	1	0	0	0	3454	855	30	4	157	4	CIB4	2	26806683	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	271684	26806683	216392690	254	26532											
EMILIN1	11117	broad.mit.edu	37	chr2	27303608	27303608	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctctgccaggtaccgccGcttcctccgccctcgctacc	8	21	1	0	rs140139205		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27303608	A	A	27303608	3	1	10	1	0	0	0	0	1	0	0	0	5135	1087	38	4	309	4	EMILIN1	2	27303608	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	496925	27303608	215895765	255	26533											
EMILIN1	11117	broad.mit.edu	37	chr2	27306454	27306454	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccactgtggagggccaggGcgctgatctggctgacctgg	17	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27306454	A	A	27306454	3	1	10	1	0	0	0	0	1	0	0	0	5135	1203	42	4	2029	4	EMILIN1	2	27306454	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2846	27306454	215892919	256	26534											
EIF2B4	8890	broad.mit.edu	37	chr2	27591106	27591106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcactagcagatttccCcactcctctacagttctgcc	4	18	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27591106	A	A	27591106	1	1	10	0	1	0	0	0	0	0	0	0	5043	638	22	2		2	EIF2B4	2	27591106	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	284652	27591106	215608267	257	26535											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27886959	27886959	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttgcaggactccaattctGgggagcccgacatccctcct	10	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27886959	A	A	27886959	3	1	10	1	0	0	0	0	1	0	0	0	14767	1348	47	4	342	4	SLC4A1AP	2	27886959	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	295853	27886959	215312414	258	26536											
PLB1	151056	broad.mit.edu	37	chr2	28855839	28855839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactgacctcaccttcttctCcgaggactgttttcacttct	5	15	5	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28855839	T	T	28855839	3	4	10	1	0	0	0	0	1	0	0	0	12119	855	30	4	4286	4	PLB1	2	28855839	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	968880	28855839	214343534	259	26537											
ALK	238	broad.mit.edu	37	chr2	30143288	30143288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggcctgccagccttcaGctccgaggaggatggtggca	15	13	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30143288	T	T	30143288	3	4	10	1	0	0	0	0	1	0	0	0	525	962	34	3	4740	3	ALK	2	30143288	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1287449	30143288	213056085	260	26538											
SRD5A2	6716	broad.mit.edu	37	chr2	31805958	31805958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgggctctgctggcaCtgaacctgcatcgcgccgtg	13	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31805958	A	A	31805958	3	1	10	1	0	0	0	0	1	0	0	0	15257	564	20	3	771	3	SRD5A2	2	31805958	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1662670	31805958	211393415	261	26539											
BIRC6	57448	broad.mit.edu	37	chr2	32800093	32800093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagtactgagattacagGcctgaaccagcgtgcccagc	10	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32800093	T	T	32800093	1	4	10	0	1	0	0	0	0	0	0	0	1444	1218	42	3		3	BIRC6	2	32800093	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	994135	32800093	210399280	262	26540											
TTC27	55622	broad.mit.edu	37	chr2	32897384	32897384	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaatgacataaagttaGcagattgtgaacagttccag	9	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32897384	C	C	32897384	3	2	10	1	0	0	0	0	1	0	0	0	16821	971	34	4	1015	4	TTC27	2	32897384	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	97291	32897384	210301989	263	26541											
LTBP1	4052	broad.mit.edu	37	chr2	33487943	33487943	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctgaataaaaatgtaagAcgggaaatttttgtctttga	8	3	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33487943	G	G	33487943	1	3	10	0	1	0	0	0	0	0	0	0	9160	290	10	5		5	LTBP1	2	33487943	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	590559	33487943	209711430	264	26542											
SLC8A1	6546	broad.mit.edu	37	chr2	40656956	40656956	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagttatggccacacacTtcaattactgaaaggagaat	9	7	1	3	rs149690605		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40656956	C	C	40656956	2	2	10	1	0	0	0	0	0	0	0	1	14820	1606	56	5		5	SLC8A1	2	40656956	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	7169013	40656956	202542417	265	26543											
SIX3	6496	broad.mit.edu	37	chr2	45170024	45170024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaagaaccggcggcagcgcGaccgcgccgcggcggccaag	16	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45170024	T	T	45170024	3	4	10	1	0	0	0	0	1	0	0	0	14461	1058	37	3	783	3	SIX3	2	45170024	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4513068	45170024	198029349	266	26544											
CRIPT	9419	broad.mit.edu	37	chr2	46846808	46846809	+	Frame_Shift_Ins	INS	-	A	A													gaaaataaagctttgacttcINSaaaaaaagcaaggtgggtaa							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46846809	A	A	46846808	7	5	10	1	0	1	1	0	0	0	0	0	3910	838	29	0	135	0	CRIPT	2	46846808	Frame_Shift_Ins	INS	-	TCGA-05-4397-01A-01D-1265-08	1676784	46846808	196352565	267	26545											
RPS27A	6233	broad.mit.edu	37	chr2	55461876	55461876	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaaatgttattgtgtgCtgctactgcttttaattaga	7	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55461876	T	T	55461876	1	4	10	0	1	0	0	0	0	0	0	0	13750	812	28	4		4	RPS27A	2	55461876	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	8615068	55461876	187737497	268	26546											
PAPOLG	64895	broad.mit.edu	37	chr2	60987327	60987327	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggaattacctccccaattAgtttggcatctcctaaagaa	6	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60987327	T	T	60987327	3	4	10	1	0	0	0	0	1	0	0	0	11525	420	15	5	82	5	PAPOLG	2	60987327	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	5525451	60987327	182212046	269	26547											
KIAA1841	84542	broad.mit.edu	37	chr2	61315512	61315512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgtttgtgtaagaaaCttttaacaaaagaaacagaa	8	4	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61315512	A	A	61315512	3	1	10	1	0	0	0	0	1	0	0	0	8331	565	20	3	1027	3	KIAA1841	2	61315512	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	328185	61315512	181883861	270	26548											
USP34	9736	broad.mit.edu	37	chr2	61622307	61622307	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccataaaagaataaaaaaggTaaacacttacattcatatca	3	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61622307	A	A	61622307	1	1	10	0	1	0	0	0	0	0	0	0	17192	1653	57	5		5	USP34	2	61622307	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	306795	61622307	181577066	271	26549											
VPS54	51542	broad.mit.edu	37	chr2	64171689	64171689	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctaatttacatctatcaTcttttctctgactgataacc	2	10	5	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64171689	A	A	64171689	1	1	10	0	1	0	0	0	0	0	0	0	17343	1450	50	5		5	VPS54	2	64171689	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2549382	64171689	179027684	272	26550											
AFTPH	54812	broad.mit.edu	37	chr2	64794785	64794785	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagaggaagttacttccctGaagcacttgctggaaacaag	11	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64794785	A	A	64794785	2	1	10	1	0	0	0	0	0	0	0	1	364	1277	45	4		4	AFTPH	2	64794785	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	623096	64794785	178404588	273	26551											
SERTAD2	9792	broad.mit.edu	37	chr2	64863200	64863200	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagacacaggggccatttttGaggctgtccctgatgaggaa	13	9	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64863200	C	C	64863200	4	2	10	1	0	0	0	0	0	1	0	0	14234	1294	45	4	142	4	SERTAD2	2	64863200	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	68415	64863200	178336173	274	26552											
FBXO48	554251	broad.mit.edu	37	chr2	68691766	68691766	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaatttagaattttaaaaaTgcaaaaggataaatgaaaga	7	2	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68691766	C	C	68691766	1	2	10	0	1	0	0	0	0	0	0	0	5814	1479	51	5		5	FBXO48	2	68691766	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3828566	68691766	174507607	275	26553											
ARHGAP25	9938	broad.mit.edu	37	chr2	69002401	69002401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatggctgccttccatcCatcgtccacccccaacccgc	7	20	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69002401	A	A	69002401	3	1	10	1	0	0	0	0	1	0	0	0	876	594	21	2	156	2	ARHGAP25	2	69002401	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	310635	69002401	174196972	276	26554											
C2orf42	54980	broad.mit.edu	37	chr2	70408798	70408798	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccagagctcagctgagtgAtgatcgtcccatccactgtc	10	13	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70408798	G	G	70408798	3	3	10	1	0	0	0	0	1	0	0	0	2188	333	12	5	1436	5	C2orf42	2	70408798	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1406397	70408798	172790575	277	26555											
FAM136A	84908	broad.mit.edu	37	chr2	70527848	70527848	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgtgaaaactggttggCcatcagtatcacaactgtta	8	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70527848	T	T	70527848	1	4	10	0	1	0	0	0	0	0	0	0	5496	754	26	4		4	FAM136A	2	70527848	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	119050	70527848	172671525	278	26556											
ALMS1	7840	broad.mit.edu	37	chr2	73679045	73679045	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgaccagaagactggGgtatcaacagtaacctctac	9	12	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73679045	T	T	73679045	2	4	10	1	0	0	0	0	0	0	0	1	535	1219	43	2		2	ALMS1	2	73679045	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	3151197	73679045	169520328	279	26557											
REG1B	5968	broad.mit.edu	37	chr2	79313658	79313658	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagaaaatggagcactcaGtggagaaggaaggtgtgagg	17	3	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79313658	C	C	79313658	1	2	10	0	1	0	0	0	0	0	0	0	13319	1044	36	4		4	REG1B	2	79313658	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	5634613	79313658	163885715	280	26558											
REG3A	5068	broad.mit.edu	37	chr2	79385532	79385532	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggaggacacgaaggatcCctcagccccactgagcacag	12	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385532	T	T	79385532	3	4	10	1	0	0	0	0	1	0	0	0	13320	632	22	4	286	4	REG3A	2	79385532	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	71874	79385532	163813841	281	26559											
RETSAT	54884	broad.mit.edu	37	chr2	85571881	85571881	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggggagtggttggtgcctGtgtggaccatggccggagac	20	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85571881	C	C	85571881	1	2	10	0	1	0	0	0	0	0	0	0	13346	1392	48	4		4	RETSAT	2	85571881	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6186349	85571881	157627492	282	26560											
RETSAT	54884	broad.mit.edu	37	chr2	85573370	85573370	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggcccctgggaaaatgCacagtgagtgagtatcttca	13	9	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85573370	T	T	85573370	1	4	10	0	1	0	0	0	0	0	0	0	13346	725	25	4		4	RETSAT	2	85573370	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1489	85573370	157626003	283	26561											
POLR1A	25885	broad.mit.edu	37	chr2	86265795	86265795	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcattctctgggtcaaggtCaatgacaatcacagcctgag	10	11	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86265795	G	G	86265795	1	3	10	0	1	0	0	0	0	0	0	0	12304	841	29	4		4	POLR1A	2	86265795	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	692425	86265795	156933578	284	26562											
KDM3A	55818	broad.mit.edu	37	chr2	86713075	86713075	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggagaggtggaaaacaccCataatcctaatgcgtaatac	10	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86713075	T	T	86713075	1	4	10	0	1	0	0	0	0	0	0	0	8196	609	21	4		4	KDM3A	2	86713075	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	447280	86713075	156486298	285	26563											
RMND5A	64795	broad.mit.edu	37	chr2	87121888	87121888	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacaggttgttgcatgtatCaagtttctttttattttatt	6	4	2	0	rs148358372	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87121888	G	G	87121888	1	3	10	0	1	0	0	0	0	0	0	0	13508	841	29	4		4	RMND5A	2	87121888	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	408813	87121888	156077485	286	26564											
FAHD2A	51011	broad.mit.edu	37	chr2	96071226	96071226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagggcctcgggctataGccctaggaatttcagggaac	13	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96071226	A	A	96071226	1	1	10	0	1	0	0	0	0	0	0	0	5419	986	34	4		4	FAHD2A	2	96071226	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	8949338	96071226	147128147	287	26565											
IL18RAP	8807	broad.mit.edu	37	chr2	103057795	103057795	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagacactaaactcaaaccaGatattctggatcctgtcgag	8	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103057795	T	T	103057795	3	4	10	1	0	0	0	0	1	0	0	0	7718	942	33	3	772	3	IL18RAP	2	103057795	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	6986569	103057795	140141578	288	26566											
SLC9A2	6549	broad.mit.edu	37	chr2	103300888	103300888	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagtagcaaaggtgtgttGaaactttggtagttaattac	10	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103300888	T	T	103300888	1	4	10	0	1	0	0	0	0	0	0	0	14826	1305	45	3		3	SLC9A2	2	103300888	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	243093	103300888	139898485	289	26567											
GCC2	9648	broad.mit.edu	37	chr2	109087635	109087635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataatttccataagaaatGtgaaagggaagaaagattga	11	2	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109087635	T	T	109087635	3	4	10	1	0	0	0	0	1	0	0	0	6348	1377	48	3	1872	3	GCC2	2	109087635	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5786747	109087635	134111738	290	26568											
IL1F7	27178	broad.mit.edu	37	chr2	113675249	113675249	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcatccttgagctcagcCtctgcggagaaaggaagtcc	11	13	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113675249	T	T	113675249	2	4	10	1	0	0	0	0	0	0	0	1	7725	668	24	4		4	IL1F7	2	113675249	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	4587614	113675249	129524124	291	26569											
DPP10	57628	broad.mit.edu	37	chr2	116525913	116525913	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagagacggcagcaaattctTtatgacagtgcctgttaagc	10	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116525913	C	C	116525913	3	2	10	1	0	0	0	0	1	0	0	0	4767	1841	64	5	1375	5	DPP10	2	116525913	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2850664	116525913	126673460	292	26570											
DDX18	8886	broad.mit.edu	37	chr2	118579625	118579626	+	Missense_Mutation	DNP	GG	TT	TT													gccacaccaggccgtctgctGgaccatatgcaggtaagaga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	118579626	TT	TT	118579625	3	4	10	1	0	0	0	0	1	0	0	0	4378	1335	47	2	961	2	DDX18	2	118579625	Missense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	2053712	118579625	124619748	293	26571											
MARCO	8685	broad.mit.edu	37	chr2	119727620	119727620	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagaagttatgcacacaTgacacaagaatgtcagggat	10	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119727620	C	C	119727620	1	2	10	0	1	0	0	0	0	0	0	0	9403	1479	51	5		5	MARCO	2	119727620	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1147995	119727620	123471753	294	26572											
SCTR	6344	broad.mit.edu	37	chr2	120204464	120204464	+	Intron	DEL	G	-	-													gtggacctggccaggcgcctGgggacacagaaagcctgtag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120204464	-	-	120204464	6	5	10	0	1	1	0	1	0	0	0	0	14056	1363	47	0		0	SCTR	2	120204464	Intron	DEL	G	TCGA-05-4397-01A-01D-1265-08	476844	120204464	122994909	295	26573											
CNTNAP5	129684	broad.mit.edu	37	chr2	125660661	125660661	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgaatgcagtgaccacGgtgcattcttcatcaggtac	11	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125660661	C	C	125660661	2	2	10	1	0	0	0	0	0	0	0	1	3682	1103	39	4		4	CNTNAP5	2	125660661	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	5456197	125660661	117538712	296	26574											
MYO7B	4648	broad.mit.edu	37	chr2	128381781	128381781	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaccctggcgcatctacttCcggaaggaattcttcacccc	7	16	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128381781	T	T	128381781	2	4	10	1	0	0	0	0	0	0	0	1	10177	854	30	4		4	MYO7B	2	128381781	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	2721120	128381781	114817592	297	26575											
AMMECR1L	83607	broad.mit.edu	37	chr2	128628438	128628438	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagttagtaaggagggagaCagagcagaaaagtttaggca	14	3	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128628438	G	G	128628438	3	3	10	1	0	0	0	0	1	0	0	0	579	478	17	4	365	4	AMMECR1L	2	128628438	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	246657	128628438	114570935	298	26576											
SMPD4	55627	broad.mit.edu	37	chr2	130930848	130930848	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctcgccactgtggtttacTtacaggcaagtaggagacag	11	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130930848	C	C	130930848	1	2	10	0	1	0	0	0	0	0	0	0	14921	1624	56	5		5	SMPD4	2	130930848	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2302410	130930848	112268525	299	26577											
FAM168B	130074	broad.mit.edu	37	chr2	131829459	131829459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggattcgctccaggataCatgttaggagaataggcagg	14	6	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131829459	A	A	131829459	3	1	10	1	0	0	0	0	1	0	0	0	5531	478	17	3	480	3	FAM168B	2	131829459	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	898611	131829459	111369914	300	26578											
CCNT2	905	broad.mit.edu	37	chr2	135677405	135677405	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttacaataaacactgcgAttgtttatatgcacaggttt	7	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135677405	G	G	135677405	3	3	10	1	0	0	0	0	1	0	0	0	2965	333	12	5	190	5	CCNT2	2	135677405	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	3847946	135677405	107521968	301	26579											
ZRANB3	84083	broad.mit.edu	37	chr2	136268037	136268037	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaactggggtcatactccaaGataccaaaggctggtcaaag	10	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136268037	A	A	136268037	1	1	10	0	1	0	0	0	0	0	0	0	18353	957	33	4		4	ZRANB3	2	136268037	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	590632	136268037	106931336	302	26580											
LCT	3938	broad.mit.edu	37	chr2	136594643	136594643	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtcattggttagaggacCagcggtggaaatgaaatttc	12	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136594643	T	T	136594643	3	4	10	1	0	0	0	0	1	0	0	0	8765	594	21	4	5754	4	LCT	2	136594643	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	326606	136594643	106604730	303	26581											
THSD7B	80731	broad.mit.edu	37	chr2	137988779	137988779	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggaaacagaccaggtcaaGaactatcctggcactggctg	12	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137988779	T	T	137988779	3	4	10	1	0	0	0	0	1	0	0	0	16003	942	33	3	1822	3	THSD7B	2	137988779	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1394136	137988779	105210594	304	26582											
SPOPL	339745	broad.mit.edu	37	chr2	139308360	139308360	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgacaggagtgctgtttgtGacattaacacatgatttcag	10	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139308360	A	A	139308360	1	1	10	0	1	0	0	0	0	0	0	0	15203	1305	45	4		4	SPOPL	2	139308360	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1319581	139308360	103891013	305	26583											
SPOPL	339745	broad.mit.edu	37	chr2	139310355	139310355	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaagtaattggtatagttGattgagtttcatttgtaaat	8	1	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139310355	A	A	139310355	1	1	10	0	1	0	0	0	0	0	0	0	15203	1305	45	4		4	SPOPL	2	139310355	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1995	139310355	103889018	306	26584											
LRP1B	53353	broad.mit.edu	37	chr2	141459344	141459344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggttgactccaaggcCggttctcatggttatcgttt	10	10	2	1	rs147767913		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141459344	A	A	141459344	3	1	10	1	0	0	0	0	1	0	0	0	9042	652	23	1	7634	1	LRP1B	2	141459344	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2148989	141459344	101740029	307	26585											
LRP1B	53353	broad.mit.edu	37	chr2	141771098	141771098	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attattatatgtgaatctcaGaagcattttaatttgttttt	5	3	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141771098	T	T	141771098	1	4	10	0	1	0	0	0	0	0	0	0	9042	957	33	3		3	LRP1B	2	141771098	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	311754	141771098	101428275	308	26586											
LRP1B	53353	broad.mit.edu	37	chr2	141777485	141777485	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tataaagctagtcaaatattGcatacccattaactggatcc	5	9	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141777485	C	C	141777485	1	2	10	0	1	0	0	0	0	0	0	0	9042	1334	46	4		4	LRP1B	2	141777485	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6387	141777485	101421888	309	26587											
NEB	4703	broad.mit.edu	37	chr2	152423688	152423688	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaaatcacttacatcactCtgtaggtcataggcctttct	5	11	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152423688	T	T	152423688	2	4	10	1	0	0	0	0	0	0	0	1	10397	912	32	4		4	NEB	2	152423688	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	10646203	152423688	90775685	310	26588											
NEB	4703	broad.mit.edu	37	chr2	152499881	152499881	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaattctgaaagtgcaagTgacaaatttgtcataattaa	6	5	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152499881	A	A	152499881	1	1	10	0	1	0	0	0	0	0	0	0	10397	1711	59	5		5	NEB	2	152499881	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	76193	152499881	90699492	311	26589											
CACNB4	785	broad.mit.edu	37	chr2	152727402	152727402	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacaataacgagagccatatCaaaatatgtaaactctgcaa	6	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152727402	A	A	152727402	1	1	10	0	1	0	0	0	0	0	0	0	2581	841	29	3		3	CACNB4	2	152727402	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	227521	152727402	90471971	312	26590											
ARL6IP6	151188	broad.mit.edu	37	chr2	153575570	153575570	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgccttgaaagtctgtccAgagtaaagttgagccagggt	13	8	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153575570	G	G	153575570	1	3	10	0	1	0	0	0	0	0	0	0	949	203	7	5		5	ARL6IP6	2	153575570	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	848168	153575570	89623803	313	26591											
ITGB6	3694	broad.mit.edu	37	chr2	160968830	160968830	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatattgcagaatgagaaTaggagaggcataggtttttt	11	3	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160968830	C	C	160968830	1	2	10	0	1	0	0	0	0	0	0	0	7969	1421	49	5		5	ITGB6	2	160968830	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	7393260	160968830	82230543	314	26592											
FAP	2191	broad.mit.edu	37	chr2	163072468	163072468	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacatacgcagggtaagtgGtatcgataataaatatccga	9	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163072468	C	C	163072468	3	2	10	1	0	0	0	0	1	0	0	0	5730	1261	44	4	1544	4	FAP	2	163072468	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2103638	163072468	80126905	315	26593											
SCN3A	6328	broad.mit.edu	37	chr2	165971899	165971899	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataaatttttttttttaaatGaggcatattcagtctccgta	5	5	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165971899	A	A	165971899	1	1	10	0	1	0	0	0	0	0	0	0	14031	1305	45	4		4	SCN3A	2	165971899	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2899431	165971899	77227474	316	26594											
SCN3A	6328	broad.mit.edu	37	chr2	165987863	165987863	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattccagccttcttggaaaTagtaataaggatccatggca	8	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165987863	C	C	165987863	3	2	10	1	0	0	0	0	1	0	0	0	14031	1406	49	5	3598	5	SCN3A	2	165987863	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	15964	165987863	77211510	317	26595											
SCN2A	6326	broad.mit.edu	37	chr2	166183487	166183487	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtattttgaccaacacCatggaaggtatgttaaaagt	9	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166183487	A	A	166183487	2	1	10	1	0	0	0	0	0	0	0	1	14029	581	21	2		2	SCN2A	2	166183487	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	195624	166183487	77015886	318	26596											
TTC21B	79809	broad.mit.edu	37	chr2	166747500	166747500	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataatgtcatataattatcTagaaacaaataatacttcag	4	5	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166747500	A	A	166747500	5	1	10	1	0	0	0	0	0	0	1	0	16814	1536	53	5	1029	5	TTC21B	2	166747500	Splice_Site	SNP	T	TCGA-05-4397-01A-01D-1265-08	564013	166747500	76451873	319	26597											
SCN1A	6323	broad.mit.edu	37	chr2	166848003	166848003	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcgctttaaaaggtggcGtctgtaagcacgctgaataa	11	7	1	1	rs121917956	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166848003	A	A	166848003	3	1	10	1	0	0	0	0	1	0	0	0	14027	1145	40	4	251	4	SCN1A	2	166848003	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	100503	166848003	76351370	320	26598											
SCN7A	6332	broad.mit.edu	37	chr2	167318937	167318937	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtaatcctgagccattaAccgaaatagggcaaataagg	11	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167318937	C	C	167318937	3	2	10	1	0	0	0	0	1	0	0	0	14036	40	2	5	4071	5	SCN7A	2	167318937	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	470934	167318937	75880436	321	26599											
B3GALT1	8708	broad.mit.edu	37	chr2	168725434	168725434	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggacaatctccacctcacGcttctctatcaaacttgaag	5	13	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168725434	T	T	168725434	1	4	10	0	1	0	0	0	0	0	0	0	1252	1102	38	3		3	B3GALT1	2	168725434	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	1406497	168725434	74473939	322	26600											
LRP2	4036	broad.mit.edu	37	chr2	169996876	169996876	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attagtgaactggtgaggttCctgtatttgttttcctggct	11	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169996876	A	A	169996876	1	1	10	0	1	0	0	0	0	0	0	0	9043	870	30	3		3	LRP2	2	169996876	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1271442	169996876	73202497	323	26601											
LRP2	4036	broad.mit.edu	37	chr2	170002408	170002408	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtataactggtcttcaaaGatgtccaggctgtaagggtt	11	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170002408	A	A	170002408	2	1	10	1	0	0	0	0	0	0	0	1	9043	932	33	4		4	LRP2	2	170002408	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	5532	170002408	73196965	324	26602											
LRP2	4036	broad.mit.edu	37	chr2	170068758	170068758	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaacttttgatcctagCtactcgccaccccatctcaa	4	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170068758	T	T	170068758	1	4	10	0	1	0	0	0	0	0	0	0	9043	812	28	4		4	LRP2	2	170068758	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	66350	170068758	73130615	325	26603											
PPIG	9360	broad.mit.edu	37	chr2	170489708	170489708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcctgcttcataccagagacGacttttagttactagatctg	8	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170489708	C	C	170489708	3	2	10	1	0	0	0	0	1	0	0	0	12425	1058	37	4	1006	4	PPIG	2	170489708	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	420950	170489708	72709665	326	26604											
PHOSPHO2	493911	broad.mit.edu	37	chr2	170557488	170557488	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatttctggaaccatgaaaAttttgctagtttttgacttt	6	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170557488	G	G	170557488	3	3	10	1	0	0	0	0	1	0	0	0	11952	101	4	5	9	5	PHOSPHO2	2	170557488	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	67780	170557488	72641885	327	26605											
GAD1	2571	broad.mit.edu	37	chr2	171716263	171716263	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatggagtcaggtacgacCatggttggctaccagcccca	12	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171716263	A	A	171716263	2	1	10	1	0	0	0	0	0	0	0	1	6239	581	21	2		2	GAD1	2	171716263	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1158775	171716263	71483110	328	26606											
MAP1D	254042	broad.mit.edu	37	chr2	172935578	172935578	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatgaatacaatgtatacTttaggaaagtagatttttaa	6	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172935578	C	C	172935578	1	2	10	0	1	0	0	0	0	0	0	0	9321	1624	56	5		5	MAP1D	2	172935578	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1219315	172935578	70263795	329	26607											
DLX2	1746	broad.mit.edu	37	chr2	172965685	172965686	+	Intron	INS	-	G	G													ttttgacctttgaggaaaaaINSgacctgagcattagtggagg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172965686	G	G	172965685	6	5	10	0	1	1	1	0	0	0	0	0	4611	87	3	0		0	DLX2	2	172965685	Intron	INS	-	TCGA-05-4397-01A-01D-1265-08	30107	172965685	70233688	330	26608											
CHN1	1123	broad.mit.edu	37	chr2	175673554	175673554	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatttcataaaatgcattCaagttagccagaaaaccagg	6	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175673554	A	A	175673554	1	1	10	0	1	0	0	0	0	0	0	0	3393	841	29	3		3	CHN1	2	175673554	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2707869	175673554	67525819	331	26609											
HOXD9	3235	broad.mit.edu	37	chr2	176987735	176987735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtgttctctgcctcgtggtCcgcggtgccctcccagcccc	11	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176987735	A	A	176987735	3	1	10	1	0	0	0	0	1	0	0	0	7393	855	30	3	241	3	HOXD9	2	176987735	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1314181	176987735	66211638	332	26610											
AGPS	8540	broad.mit.edu	37	chr2	178378551	178378551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatctttttttagggtgGtagatctctgtagaaatgta	9	3	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178378551	T	T	178378551	3	4	10	1	0	0	0	0	1	0	0	0	394	1261	44	3	1678	3	AGPS	2	178378551	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1390816	178378551	64820822	333	26611											
PDE11A	50940	broad.mit.edu	37	chr2	178740728	178740728	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgtaataaacattttcaTctttataatgattataatac	2	4	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178740728	C	C	178740728	1	2	10	0	1	0	0	0	0	0	0	0	11725	1450	50	5		5	PDE11A	2	178740728	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	362177	178740728	64458645	334	26612											
FKBP7	51661	broad.mit.edu	37	chr2	179343127	179343127	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaacttctattttcacttCttcggtgctctcctctttct	3	13	6	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179343127	T	T	179343127	3	4	10	1	0	0	0	0	1	0	0	0	5970	922	32	4	584	4	FKBP7	2	179343127	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	602399	179343127	63856246	335	26613											
TTN	7273	broad.mit.edu	37	chr2	179422207	179422208	+	Missense_Mutation	DNP	GG	TT	TT													cactgcctccatttgacactGgttcatgccagcccacagtg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179422208	TT	TT	179422207	3	4	10	1	0	0	0	0	1	0	0	0	16861	1348	47	2	20333	2	TTN	2	179422207	Missense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	79080	179422207	63777166	336	26614											
TTN	7273	broad.mit.edu	37	chr2	179427123	179427123	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtcttaacttgtgtgcaGgtgctccacttttcactccc	8	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179427123	T	T	179427123	2	4	10	1	0	0	0	0	0	0	0	1	16861	987	35	2		2	TTN	2	179427123	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	4916	179427123	63772250	337	26615											
TTN	7273	broad.mit.edu	37	chr2	179431317	179431317	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaagatctcactgccgccAtcatagatgggtttacccca	7	15	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179431317	G	G	179431317	2	3	10	1	0	0	0	0	0	0	0	1	16861	214	8	5		5	TTN	2	179431317	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	4194	179431317	63768056	338	26616											
TTN	7273	broad.mit.edu	37	chr2	179441840	179441840	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctcttttcaagtatataGgacttaattggtgagccgcc	8	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179441840	A	A	179441840	2	1	10	1	0	0	0	0	0	0	0	1	16861	987	35	4		4	TTN	2	179441840	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	10523	179441840	63757533	339	26617											
TTN	7273	broad.mit.edu	37	chr2	179456358	179456358	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacattctatcgggatagttGtgtcagggagaccaagaccc	12	9	2	2	rs1560220		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179456358	C	C	179456358	3	2	10	1	0	0	0	0	1	0	0	0	16861	1377	48	4	48031	4	TTN	2	179456358	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	14518	179456358	63743015	340	26618											
TTN	7273	broad.mit.edu	37	chr2	179577936	179577951	+	Frame_Shift_Del	DEL	GGTGGTCTGGTATTTC	-	-													gcacaagtattatctgtcagGgtggtctggtatttccttcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179577951	-	-	179577936	7	5	10	1	0	1	0	1	0	0	0	0	16861	1219	43	0	77684	0	TTN	2	179577936	Frame_Shift_Del	DEL	GGTGGTCTGGTATTTC	TCGA-05-4397-01A-01D-1265-08	121578	179577936	63621437	341	26619											
TTN	7273	broad.mit.edu	37	chr2	179583172	179583172	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatggtagatttttctgtcaTagtaatactgcatctctcag	7	7	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179583172	C	C	179583172	3	2	10	1	0	0	0	0	1	0	0	0	16861	1406	49	5	79980	5	TTN	2	179583172	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	5236	179583172	63616201	342	26620											
TTN	7273	broad.mit.edu	37	chr2	179604494	179604494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattctaggaccctcagctGttaggatgtctatttcctca	8	10	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179604494	T	T	179604494	3	4	10	1	0	0	0	0	1	0	0	0	16861	1377	48	3	91323	3	TTN	2	179604494	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	21322	179604494	63594879	343	26621											
TTN	7273	broad.mit.edu	37	chr2	179606578	179606578	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagttcaagtgtttcattTattttagataattgaagttc	6	3	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179606578	C	C	179606578	3	2	10	1	0	0	0	0	1	0	0	0	16861	1744	61	5	93407	5	TTN	2	179606578	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2084	179606578	63592795	344	26622											
TTN	7273	broad.mit.edu	37	chr2	179640522	179640522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcctcataggattcatcCttctttcgagacttgagctc	7	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179640522	A	A	179640522	3	1	10	1	0	0	0	0	1	0	0	0	16861	680	24	2	105259	2	TTN	2	179640522	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	33944	179640522	63558851	345	26623											
TTN	7273	broad.mit.edu	37	chr2	179659090	179659090	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgtgcactgaaggacgtGgctctgcgggtgccccatgg	15	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179659090	A	A	179659090	1	1	10	0	1	0	0	0	0	0	0	0	16861	1363	47	4		4	TTN	2	179659090	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	18568	179659090	63540283	346	26624											
CCDC141	285025	broad.mit.edu	37	chr2	179732787	179732787	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagatgatgtcgactcctAaggaaagggccagtctgtgg	14	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179732787	G	G	179732787	3	3	10	1	0	0	0	0	1	0	0	0	2801	372	13	5	1844	5	CCDC141	2	179732787	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	73697	179732787	63466586	347	26625											
ZNF804A	91752	broad.mit.edu	37	chr2	185800564	185800564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttactgtgagagaaaaCtgtaatgaaatttcccaacg	8	7	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185800564	A	A	185800564	3	1	10	1	0	0	0	0	1	0	0	0	18299	564	20	3	455	3	ZNF804A	2	185800564	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	6067777	185800564	57398809	348	26626											
GULP1	51454	broad.mit.edu	37	chr2	189452738	189452738	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgatatgggacaaagagAatgttatgtaccaaaactat	8	4	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189452738	T	T	189452738	1	4	10	0	1	0	0	0	0	0	0	0	6966	261	9	5		5	GULP1	2	189452738	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	3652174	189452738	53746635	349	26627											
COL3A1	1281	broad.mit.edu	37	chr2	189872840	189872840	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattggaccaccagggcctcGaggtaacagaggtgaaagag	14	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189872840	A	A	189872840	3	1	10	1	0	0	0	0	1	0	0	0	3720	1058	37	4	3683	4	COL3A1	2	189872840	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	420102	189872840	53326533	350	26628											
COL5A2	1290	broad.mit.edu	37	chr2	189898702	189898702	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggatcagccattacttcAagagtctcaggatcaacttc	8	11	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189898702	G	G	189898702	1	3	10	0	1	0	0	0	0	0	0	0	3729	145	5	5		5	COL5A2	2	189898702	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	25862	189898702	53300671	351	26629											
COL5A2	1290	broad.mit.edu	37	chr2	189929300	189929300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccgagcacctggaagccCaggttcccctggacgtcctg	11	16	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189929300	A	A	189929300	3	1	10	1	0	0	0	0	1	0	0	0	3729	594	21	2	2920	2	COL5A2	2	189929300	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	30598	189929300	53270073	352	26630											
WDR75	84128	broad.mit.edu	37	chr2	190315685	190315685	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggactatatagatggcatCttaataaaggtatgtggatt	11	3	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190315685	T	T	190315685	2	4	10	1	0	0	0	0	0	0	0	1	17452	903	32	4		4	WDR75	2	190315685	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	386385	190315685	52883688	353	26631											
DNAH7	56171	broad.mit.edu	37	chr2	196865308	196865308	+	Intron	DEL	T	-	-													agttttttaggaaaactttcTtataagccaacattattata							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196865308	-	-	196865308	6	5	10	0	1	1	0	1	0	0	0	0	4646	1624	56	0		0	DNAH7	2	196865308	Intron	DEL	T	TCGA-05-4397-01A-01D-1265-08	6549623	196865308	46334065	354	26632											
DNAH7	56171	broad.mit.edu	37	chr2	196922906	196922906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaattgattcactcaacCaaattttacagtgtttattg	4	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196922906	A	A	196922906	1	1	10	0	1	0	0	0	0	0	0	0	4646	609	21	2		2	DNAH7	2	196922906	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	57598	196922906	46276467	355	26633											
PGAP1	80055	broad.mit.edu	37	chr2	197767540	197767540	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataagatatctatacagtaaTattaatatgtaactgaattt	4	3	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197767540	A	A	197767540	1	1	10	0	1	0	0	0	0	0	0	0	11872	1421	49	5		5	PGAP1	2	197767540	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	844634	197767540	45431833	356	26634											
MPP4	58538	broad.mit.edu	37	chr2	202557602	202557602	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccacaaccccttcagcaagCaaaggcttccgagcaaagaa	7	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202557602	G	G	202557602	1	3	10	0	1	0	0	0	0	0	0	0	9830	725	25	4		4	MPP4	2	202557602	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4790062	202557602	40641771	357	26635											
CTLA4	1493	broad.mit.edu	37	chr2	204735946	204735946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctcctggggaagtagtcCcaaatagccaaacctattgg	10	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204735946	A	A	204735946	1	1	10	0	1	0	0	0	0	0	0	0	4045	638	22	2		2	CTLA4	2	204735946	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2178344	204735946	38463427	358	26636											
PARD3B	117583	broad.mit.edu	37	chr2	206118211	206118211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagagaccaaacttggcGggcactggaagtacctgggg	15	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206118211	A	A	206118211	1	1	10	0	1	0	0	0	0	0	0	0	11538	1131	39	4		4	PARD3B	2	206118211	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1382265	206118211	37081162	359	26637											
NRP2	8828	broad.mit.edu	37	chr2	206659486	206659486	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tatgtatcgcagatgaatacGaggtggactggagcaattct	12	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206659486	C	C	206659486	3	2	10	1	0	0	0	0	1	0	0	0	10756	1059	37	4	2878	4	NRP2	2	206659486	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	541275	206659486	36539887	360	26638											
ZDBF2	57683	broad.mit.edu	37	chr2	207169613	207169613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagagttacattccagaCctcataaatctcaggaaggc	8	9	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207169613	A	A	207169613	3	1	10	1	0	0	0	0	1	0	0	0	17725	507	18	3	371	3	ZDBF2	2	207169613	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	510127	207169613	36029760	361	26639											
FASTKD2	22868	broad.mit.edu	37	chr2	207652825	207652826	+	Missense_Mutation	DNP	GG	TT	TT													aggtgctgagcagccttctgGgaggtgaaggacacttctca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	207652826	TT	TT	207652825	3	4	10	1	0	0	0	0	1	0	0	0	5743	1233	43	2	1789	2	FASTKD2	2	207652825	Missense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	483212	207652825	35546548	362	26640											
CRYGC	1420	broad.mit.edu	37	chr2	208993022	208993022	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttggggcctcagcaggtAttgccgcccccggtagttgg	14	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	208993022	G	G	208993022	3	3	10	1	0	0	0	0	1	0	0	0	3948	449	16	5	98	5	CRYGC	2	208993022	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1340197	208993022	34206351	363	26641											
ERBB4	2066	broad.mit.edu	37	chr2	212288914	212288914	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtaaacgtcaatagtgcaGatgggaggctgaggcaaacg	14	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212288914	T	T	212288914	2	4	10	1	0	0	0	0	0	0	0	1	5251	932	33	3		3	ERBB4	2	212288914	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	3295892	212288914	30910459	364	26642											
XRCC5	7520	broad.mit.edu	37	chr2	217039646	217039646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctaccatatccgtcacGtctaccgccagatccgtaac	6	16	3	1	rs72954616	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217039646	T	T	217039646	1	4	10	0	1	0	0	0	0	0	0	0	17583	1160	40	3		3	XRCC5	2	217039646	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4750732	217039646	26159727	365	26643											
RQCD1	9125	broad.mit.edu	37	chr2	219457009	219457009	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcaactttataaactcttcGattttgttttgcttcaggtt	6	7	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219457009	A	A	219457009	1	1	10	0	1	0	0	0	0	0	0	0	13781	1073	37	4		4	RQCD1	2	219457009	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2417363	219457009	23742364	366	26644											
TTLL4	9654	broad.mit.edu	37	chr2	219602866	219602866	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaagagcctccctgtcaGtctcactgccaacaaggcca	7	15	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219602866	C	C	219602866	3	2	10	1	0	0	0	0	1	0	0	0	16855	1029	36	4	469	4	TTLL4	2	219602866	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	145857	219602866	23596507	367	26645											
DNAJB2	3300	broad.mit.edu	37	chr2	220149663	220149663	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtgaagcaaccaaacGcagtccatccccagaggaga	13	11	0	3	rs143306245	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220149663	C	C	220149663	3	2	10	1	0	0	0	0	1	0	0	0	4660	1087	38	4	959	4	DNAJB2	2	220149663	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	546797	220149663	23049710	368	26646											
GMPPA	29926	broad.mit.edu	37	chr2	220368852	220368852	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acatttatcagtgacatcatCaactgcggcatctacctctt	5	12	5	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220368852	G	G	220368852	3	3	10	1	0	0	0	0	1	0	0	0	6558	816	29	4	559	4	GMPPA	2	220368852	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	219189	220368852	22830521	369	26647											
CUL3	8452	broad.mit.edu	37	chr2	225364921	225364921	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttactcatcaagatcctataGagggggaaattgctgtatgc	10	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225364921	A	A	225364921	1	1	10	0	1	0	0	0	0	0	0	0	4089	957	33	4		4	CUL3	2	225364921	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4996069	225364921	17834452	370	26648											
DOCK10	55619	broad.mit.edu	37	chr2	225738659	225738659	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatagaaaagatttttgactAgggtggtgtaatgttggctt	12	2	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225738659	G	G	225738659	1	3	10	0	1	0	0	0	0	0	0	0	4725	435	15	5		5	DOCK10	2	225738659	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	373738	225738659	17460714	371	26649											
COL4A4	1286	broad.mit.edu	37	chr2	227976473	227976473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagtccacacaatgttcCtaaaacagagattatgtaaa	5	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227976473	A	A	227976473	1	1	10	0	1	0	0	0	0	0	0	0	3725	696	24	2		2	COL4A4	2	227976473	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2237814	227976473	15222900	372	26650											
COL4A4	1286	broad.mit.edu	37	chr2	228004926	228004926	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaacagagcaatctcttcctCcacaaggaccaatgtatttc	5	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228004926	G	G	228004926	3	3	10	1	0	0	0	0	1	0	0	0	3725	855	30	4	5109	4	COL4A4	2	228004926	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	28453	228004926	15194447	373	26651											
COL4A3	1285	broad.mit.edu	37	chr2	228173983	228173983	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccaaaccactgacattccTccatgtcctcacggctggat	7	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228173983	C	C	228173983	2	2	10	1	0	0	0	0	0	0	0	1	3723	1538	54	5		5	COL4A3	2	228173983	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	169057	228173983	15025390	374	26652											
PID1	55022	broad.mit.edu	37	chr2	229890756	229890756	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcttcttccagagctcaatGactggcttttctgtgcagcc	9	12	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229890756	A	A	229890756	2	1	10	1	0	0	0	0	0	0	0	1	11977	1277	45	4		4	PID1	2	229890756	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1716773	229890756	13308617	375	26653											
SP140	11262	broad.mit.edu	37	chr2	231152715	231152715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaatgaactttcaataaCtaaacatctaatttcctgtg	5	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231152715	A	A	231152715	1	1	10	0	1	0	0	0	0	0	0	0	15076	580	20	3		3	SP140	2	231152715	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1261959	231152715	12046658	376	26654											
SP100	6672	broad.mit.edu	37	chr2	231405415	231405415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctatcactattggtgggaGggcatgcctttggctattga	13	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231405415	T	T	231405415	1	4	10	0	1	0	0	0	0	0	0	0	15074	1015	35	2		2	SP100	2	231405415	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	252700	231405415	11793958	377	26655											
TRPM8	79054	broad.mit.edu	37	chr2	234846051	234846051	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcacatggaaggcacccaGatcaaccaaagtgagaaatg	10	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234846051	T	T	234846051	3	4	10	1	0	0	0	0	1	0	0	0	16717	933	33	3	256	3	TRPM8	2	234846051	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3440636	234846051	8353322	378	26656											
AGAP1	116987	broad.mit.edu	37	chr2	236957706	236957706	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcctcttcccgtagatcCcaactgggccagtttgaact	8	13	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236957706	T	T	236957706	3	4	10	1	0	0	0	0	1	0	0	0	366	623	22	4	1957	4	AGAP1	2	236957706	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2111655	236957706	6241667	379	26657											
COL6A3	1293	broad.mit.edu	37	chr2	238280656	238280656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaggaactgcgggacgCcctcttcaatgcggctcccc	12	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238280656	A	A	238280656	3	1	10	1	0	0	0	0	1	0	0	0	3733	739	26	3	5720	3	COL6A3	2	238280656	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1322950	238280656	4918717	380	26658											
KIF1A	547	broad.mit.edu	37	chr2	241725738	241725738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcagggaggtccagtgaGtccctccacccacctggcct	13	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241725738	T	T	241725738	1	4	10	0	1	0	0	0	0	0	0	0	8353	1044	36	3		3	KIF1A	2	241725738	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3445082	241725738	1473635	381	26659											
AGXT	189	broad.mit.edu	37	chr2	241813547	241813547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctcaggtggcccgaggCgggaggggcgggagccaggc	23	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241813547	A	A	241813547	1	1	10	0	1	0	0	0	0	0	0	0	404	783	27	3		3	AGXT	2	241813547	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	87809	241813547	1385826	382	26660											
PPP1R7	5510	broad.mit.edu	37	chr2	242097260	242097260	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggacatggaaaccatcaacCtggacagagatgcagaggta	12	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242097260	G	G	242097260	3	3	10	1	0	0	0	0	1	0	0	0	12477	680	24	4	230	4	PPP1R7	2	242097260	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	283713	242097260	1102113	383	26661											
CNTN6	27255	broad.mit.edu	37	chr3	1262346	1262346	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggccacttttttttcatGtgatttattcttttcttttc	5	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1262346	A	A	1262346	1	1	10	0	1	0	0	0	0	0	0	0	3677	1392	48	4		4	CNTN6	3	1262346	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08		1262346	196760084	384	26662											
IL5RA	3568	broad.mit.edu	37	chr3	3132002	3132002	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatccttgtaaaggctgaaTgttaaacctgggctttctat	8	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3132002	C	C	3132002	1	2	10	0	1	0	0	0	0	0	0	0	7770	1479	51	5		5	IL5RA	3	3132002	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1869656	3132002	194890428	385	26663											
ITPR1	3708	broad.mit.edu	37	chr3	4699805	4699805	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttggtgactttacctcctCaggtggaccctgatcaggac	10	11	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4699805	T	T	4699805	1	4	10	0	1	0	0	0	0	0	0	0	7990	841	29	4		4	ITPR1	3	4699805	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1567803	4699805	193322625	386	26664											
SRGAP3	9901	broad.mit.edu	37	chr3	9290551	9290552	+	Intron	DNP	TC	GA	GA													ggggaggagaaggaaaactcTcccagcccgcatctcacctt							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	9290552	GA	GA	9290551	1	3	10	0	1	0	0	0	0	0	0	0	15265	1566	54	5		5	SRGAP3	3	9290551	Intron	DNP	TC	TCGA-05-4397-01A-01D-1265-08	4590746	9290551	188731879	387	26665											
MTMR14	64419	broad.mit.edu	37	chr3	9739372	9739372	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactgactgcatcctctccCctctctctcctctctgcccc	4	21	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9739372	T	T	9739372	1	4	10	0	1	0	0	0	0	0	0	0	10036	638	22	4		4	MTMR14	3	9739372	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	448821	9739372	188283058	388	26666											
SYN2	6854	broad.mit.edu	37	chr3	12232139	12232139	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agattagctcttcagacacaCggggcacccagcccaaccgg	10	15	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12232139	G	G	12232139	1	3	10	0	1	0	0	0	0	0	0	0	15560	551	19	4		4	SYN2	3	12232139	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	2492767	12232139	185790291	389	26667											
FBLN2	2199	broad.mit.edu	37	chr3	13669311	13669311	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgccccccagcccttgaCacccagcctctccgctgcag	7	22	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13669311	G	G	13669311	1	3	10	0	1	0	0	0	0	0	0	0	5756	493	17	4		4	FBLN2	3	13669311	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1437172	13669311	184353119	390	26668											
CHCHD4	131474	broad.mit.edu	37	chr3	14158095	14158095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctttaaacccaaagcagCcgccacacaaaccaagtttg	6	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14158095	A	A	14158095	1	1	10	0	1	0	0	0	0	0	0	0	3349	754	26	3		3	CHCHD4	3	14158095	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	488784	14158095	183864335	391	26669											
HACL1	26061	broad.mit.edu	37	chr3	15621336	15621336	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgattctttcagaactccatCctagatgaagatcacaaaat	5	9	3	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15621336	G	G	15621336	1	3	10	0	1	0	0	0	0	0	0	0	7007	870	30	4		4	HACL1	3	15621336	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1463241	15621336	182401094	392	26670											
KCNH8	131096	broad.mit.edu	37	chr3	19491866	19491866	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaaacgcaagatgttctAatgcaggtatcagaagtgaa	11	5	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19491866	C	C	19491866	1	2	10	0	1	0	0	0	0	0	0	0	8108	377	13	5		5	KCNH8	3	19491866	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	3870530	19491866	178530564	393	26671											
CLASP2	23122	broad.mit.edu	37	chr3	33614712	33614712	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttctgccacatcttccgtCtgcctcatatatgtaggaat	6	12	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33614712	A	A	33614712	3	1	10	1	0	0	0	0	1	0	0	0	3486	912	32	3	1987	3	CLASP2	3	33614712	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	14122846	33614712	164407718	394	26672											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37033806	37033806	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagacgagtcctgagttctCaccaatcatcctcaaagtat	7	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37033806	G	G	37033806	3	3	10	1	0	0	0	0	1	0	0	0	5226	835	29	4	1064	4	EPM2AIP1	3	37033806	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3419094	37033806	160988624	395	26673											
ITGA9	3680	broad.mit.edu	37	chr3	37778285	37778285	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctatacataaaactaaAgcttatcatgcaaatgagct	5	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37778285	C	C	37778285	1	2	10	0	1	0	0	0	0	0	0	0	7953	87	3	5		5	ITGA9	3	37778285	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	744479	37778285	160244145	396	26674											
SLC22A14	9389	broad.mit.edu	37	chr3	38359481	38359481	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggaccaacttcaaagacAgaaaagagaagggtctcgca	12	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38359481	G	G	38359481	1	3	10	0	1	0	0	0	0	0	0	0	14558	203	7	5		5	SLC22A14	3	38359481	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	581196	38359481	159662949	397	26675											
SCN5A	6331	broad.mit.edu	37	chr3	38622670	38622670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccctgggcggcaagggCtgcgggcttctgaggccgct	18	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38622670	A	A	38622670	3	1	10	1	0	0	0	0	1	0	0	0	14035	797	28	3	3118	3	SCN5A	3	38622670	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	263189	38622670	159399760	398	26676											
SCN10A	6336	broad.mit.edu	37	chr3	38764810	38764810	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagcctgggagtgaggcaGcaagtgggcacagcttgttt	15	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38764810	A	A	38764810	1	1	10	0	1	0	0	0	0	0	0	0	14025	986	34	4		4	SCN10A	3	38764810	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	142140	38764810	159257620	399	26677											
SCN11A	11280	broad.mit.edu	37	chr3	38938322	38938322	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttgaaaaaaaTctaagacacataccacaagt	3	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38938322	C	C	38938322	1	2	10	0	1	0	0	0	0	0	0	0	14026	1450	50	5		5	SCN11A	3	38938322	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	173512	38938322	159084108	400	26678											
ULK4	54986	broad.mit.edu	37	chr3	41290951	41290951	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgtgctgatctagagcaGactgctgatcctcctgggtc	13	10	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41290951	C	C	41290951	1	2	10	0	1	0	0	0	0	0	0	0	17104	957	33	4		4	ULK4	3	41290951	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2352629	41290951	156731479	401	26679											
KBTBD5	131377	broad.mit.edu	37	chr3	42727898	42727898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaggatgcacacgaggGccgcatcaccacgctgcgga	15	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42727898	T	T	42727898	3	4	10	1	0	0	0	0	1	0	0	0	8066	1203	42	3	790	3	KBTBD5	3	42727898	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1436947	42727898	155294532	402	26680											
ZNF167	55888	broad.mit.edu	37	chr3	44621934	44621934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagagtgtggacttggtGgtggggactttctcagcact	15	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44621934	T	T	44621934	1	4	10	0	1	0	0	0	0	0	0	0	17867	1363	47	2		2	ZNF167	3	44621934	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1894036	44621934	153400496	403	26681											
KIF15	56992	broad.mit.edu	37	chr3	44846844	44846844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatatattcaatgaactagGtaatacaggtgttttaagca	7	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44846844	T	T	44846844	1	4	10	0	1	0	0	0	0	0	0	0	8347	1276	44	3		3	KIF15	3	44846844	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	224910	44846844	153175586	404	26682											
ZDHHC3	51304	broad.mit.edu	37	chr3	44986647	44986647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagagaggaggcgagccCcagtgagtgtacctgcagtg	17	8	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44986647	A	A	44986647	1	1	10	0	1	0	0	0	0	0	0	0	17742	638	22	2		2	ZDHHC3	3	44986647	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	139803	44986647	153035783	405	26683											
CELSR3	1951	broad.mit.edu	37	chr3	48665887	48665887	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtttccgaagcttctcctCtttctgcagttgcttcagct	7	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48665887	T	T	48665887	3	4	10	1	0	0	0	0	1	0	0	0	3253	922	32	4		4	CELSR3	3	48665887	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3679240	48665887	149356543	406	26684											
TRAIP	10293	broad.mit.edu	37	chr3	49866483	49866483	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacccctgcctggacagtcCttgacctacaagttgcaggc	9	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49866483	A	A	49866483	1	1	10	0	1	0	0	0	0	0	0	0	16572	696	24	2		2	TRAIP	3	49866483	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	1200596	49866483	148155947	407	26685											
CAMKV	79012	broad.mit.edu	37	chr3	49898775	49898775	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgagcagaagacaccaTgaggaccttggaggctagac	15	8	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49898775	C	C	49898775	1	2	10	0	1	0	0	0	0	0	0	0	2634	1479	51	5		5	CAMKV	3	49898775	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	32292	49898775	148123655	408	26686											
MST1R	4486	broad.mit.edu	37	chr3	49928550	49928550	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggacaaggctggagtgggcCcttccctgaggcggccttga	16	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49928550	G	G	49928550	1	3	10	0	1	0	0	0	0	0	0	0	9985	638	22	4		4	MST1R	3	49928550	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	29775	49928550	148093880	409	26687											
SEMA3F	6405	broad.mit.edu	37	chr3	50224244	50224244	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagtggtgaaatgtagtaGaggagtgatctggagcaact	14	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50224244	A	A	50224244	1	1	10	0	1	0	0	0	0	0	0	0	14142	957	33	4		4	SEMA3F	3	50224244	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	295694	50224244	147798186	410	26688											
DNAH1	25981	broad.mit.edu	37	chr3	52433526	52433526	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacccagattctgggtattgTtatgtgtgtggggtgtgtct	14	5	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52433526	A	A	52433526	1	1	10	0	1	0	0	0	0	0	0	0	4637	1740	60	5		5	DNAH1	3	52433526	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2209282	52433526	145588904	411	26689											
SEMA3G	56920	broad.mit.edu	37	chr3	52472194	52472194	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagctgggccacacccagccGagagcccacgtatagcattt	10	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52472194	A	A	52472194	3	1	10	1	0	0	0	0	1	0	0	0	14143	1057	37	4	829	4	SEMA3G	3	52472194	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	38668	52472194	145550236	412	26690											
ITIH4	3700	broad.mit.edu	37	chr3	52852311	52852311	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttgtttctaaaagaagaAaaagtctgggtttaggcagc	12	4	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52852311	G	G	52852311	1	3	10	0	1	0	0	0	0	0	0	0	7976	29	1	5		5	ITIH4	3	52852311	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	380117	52852311	145170119	413	26691											
CACNA1D	776	broad.mit.edu	37	chr3	53765007	53765007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttctaattaaattctgtcCttcattggagcattattgat	6	6	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53765007	T	T	53765007	1	4	10	0	1	0	0	0	0	0	0	0	2567	696	24	4		4	CACNA1D	3	53765007	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	912696	53765007	144257423	414	26692											
C3orf63	23272	broad.mit.edu	37	chr3	56675595	56675595	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcataggcatcatcagTgctcaatcctaaggctttgt	7	11	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56675595	A	A	56675595	3	1	10	1	0	0	0	0	1	0	0	0	2261	1696	59	5	2711	5	C3orf63	3	56675595	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2910588	56675595	141346835	415	26693											
ADAMTS9	56999	broad.mit.edu	37	chr3	64619165	64619165	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacccggcaaaggccctggaCacagatatcatttgtgtcct	9	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64619165	G	G	64619165	3	3	10	1	0	0	0	0	1	0	0	0	273	478	17	4	3753	4	ADAMTS9	3	64619165	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	7943570	64619165	133403265	416	26694											
PROS1	5627	broad.mit.edu	37	chr3	93625105	93625105	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaaaaacacacaactcCtttctttaaataatactttt	1	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93625105	T	T	93625105	1	4	10	0	1	0	0	0	0	0	0	0	12664	696	24	4		4	PROS1	3	93625105	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	29005940	93625105	104397325	417	26695											
CRYBG3	131544	broad.mit.edu	37	chr3	97596395	97596395	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagacagtgaaaaccaGtcctcttctgttttatccct	6	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97596395	A	A	97596395	2	1	10	1	0	0	0	0	0	0	0	1	3945	1020	36	4		4	CRYBG3	3	97596395	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	3971290	97596395	100426035	418	26696											
OR5H6	79295	broad.mit.edu	37	chr3	97983473	97983473	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctctctgaatgcatggtAcaatttttttcccttgtaac	5	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97983473	T	T	97983473	2	4	10	1	0	0	0	0	0	0	0	1	11257	378	14	5		5	OR5H6	3	97983473	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	387078	97983473	100038957	419	26697											
OR5K4	403278	broad.mit.edu	37	chr3	98072866	98072866	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtagagcgtcgtcttctcAcaccaatgtacatctttctg	7	11	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98072866	T	T	98072866	3	4	10	1	0	0	0	0	1	0	0	0	11263	159	6	5	171	5	OR5K4	3	98072866	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	89393	98072866	99949564	420	26698											
OR5K3	403277	broad.mit.edu	37	chr3	98109951	98109951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattcagatgactgcaggaGcctacctagctggcaacctg	11	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98109951	T	T	98109951	3	4	10	1	0	0	0	0	1	0	0	0	11262	971	34	3	444	3	OR5K3	3	98109951	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	37085	98109951	99912479	421	26699											
TBC1D23	55773	broad.mit.edu	37	chr3	100038107	100038107	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggggaagttaataatacAaaactgaactacagaagaac	8	5	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100038107	G	G	100038107	1	3	10	0	1	0	0	0	0	0	0	0	15732	145	5	5		5	TBC1D23	3	100038107	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1928156	100038107	97984323	422	26700											
GPR128	84873	broad.mit.edu	37	chr3	100349708	100349708	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaattactatgctgagtcaTacctctcatacctcctacta	4	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100349708	C	C	100349708	1	2	10	0	1	0	0	0	0	0	0	0	6706	1421	49	5		5	GPR128	3	100349708	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	311601	100349708	97672722	423	26701											
RG9MTD1	54931	broad.mit.edu	37	chr3	101283640	101283640	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttacatggctgctttcctCaaaatgagtgttagtgtcaa	9	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101283640	G	G	101283640	2	3	10	1	0	0	0	0	0	0	0	1	13379	813	29	4		4	RG9MTD1	3	101283640	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	933932	101283640	96738790	424	26702											
NFKBIZ	64332	broad.mit.edu	37	chr3	101571196	101571196	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcataagatgacaaagtccAtaggacagagaccatatttg	8	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101571196	G	G	101571196	1	3	10	0	1	0	0	0	0	0	0	0	10478	232	8	5		5	NFKBIZ	3	101571196	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	287556	101571196	96451234	425	26703											
NFKBIZ	64332	broad.mit.edu	37	chr3	101578130	101578130	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacattggccataagaaataAacctcacaaattttatttgt	4	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101578130	T	T	101578130	1	4	10	0	1	0	0	0	0	0	0	0	10478	29	1	5		5	NFKBIZ	3	101578130	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	6934	101578130	96444300	426	26704											
ALCAM	214	broad.mit.edu	37	chr3	105250977	105250977	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccttcttctgaccttacAttccaagacaagtaagaaag	7	10	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105250977	T	T	105250977	1	4	10	0	1	0	0	0	0	0	0	0	487	232	8	5		5	ALCAM	3	105250977	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	3672847	105250977	92771453	427	26705											
ALCAM	214	broad.mit.edu	37	chr3	105268830	105268830	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattggcatacatgggtcttGatctatgatcttacatagct	8	7	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105268830	C	C	105268830	1	2	10	0	1	0	0	0	0	0	0	0	487	1305	45	4		4	ALCAM	3	105268830	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	17853	105268830	92753600	428	26706											
BBX	56987	broad.mit.edu	37	chr3	107491895	107491895	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatcattgaggatcccgcaGcattaaacaagccagaaaag	9	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107491895	A	A	107491895	3	1	10	1	0	0	0	0	1	0	0	0	1348	971	34	4	1357	4	BBX	3	107491895	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2223065	107491895	90530535	429	26707											
MORC1	27136	broad.mit.edu	37	chr3	108778738	108778738	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagaaatgcattggttgGgagagaacataatgccactg	13	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108778738	A	A	108778738	1	1	10	0	1	0	0	0	0	0	0	0	9795	1247	43	4		4	MORC1	3	108778738	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1286843	108778738	89243692	430	26708											
PVRL3	25945	broad.mit.edu	37	chr3	110830863	110830863	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaattgtagtactttTttttcctccataggtgcctt	5	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110830863	C	C	110830863	1	2	10	0	1	0	0	0	0	0	0	0	12949	1856	64	5		5	PVRL3	3	110830863	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2052125	110830863	87191567	431	26709											
NAA50	80218	broad.mit.edu	37	chr3	113442796	113442796	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaggacaaaaaaaaaacTatattataccaagttttgct	7	5	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113442796	C	C	113442796	1	2	10	0	1	0	0	0	0	0	0	0	10220	1537	53	5		5	NAA50	3	113442796	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2611933	113442796	84579634	432	26710											
GRAMD1C	54762	broad.mit.edu	37	chr3	113638840	113638840	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagtgggatatgaccctactCcaacaatcagatgtgaacca	8	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113638840	G	G	113638840	1	3	10	0	1	0	0	0	0	0	0	0	6815	870	30	4		4	GRAMD1C	3	113638840	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	196044	113638840	84383590	433	26711											
LSAMP	4045	broad.mit.edu	37	chr3	115805239	115805239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgagcaagtgtaggaaCcctcatcatagacatccacc	8	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115805239	A	A	115805239	3	1	10	1	0	0	0	0	1	0	0	0	9135	507	18	3	720	3	LSAMP	3	115805239	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2166399	115805239	82217191	434	26712											
C3orf30	152405	broad.mit.edu	37	chr3	118865123	118865123	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgctggccacactaagggCcaggaagaagacgaccagaa	13	10	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118865123	A	A	118865123	2	1	10	1	0	0	0	0	0	0	0	1	2242	726	26	3		3	C3orf30	3	118865123	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	3059884	118865123	79157307	435	26713											
UPK1B	7348	broad.mit.edu	37	chr3	118905622	118905622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaactgttcgttgcttcCagggcctgctgatttttgga	10	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118905622	A	A	118905622	3	1	10	1	0	0	0	0	1	0	0	0	17134	595	21	2	36	2	UPK1B	3	118905622	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	40499	118905622	79116808	436	26714											
ARHGAP31	57514	broad.mit.edu	37	chr3	119013842	119013842	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagtatctggaaagctcgGgacaggatggtaatgtgcct	15	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119013842	A	A	119013842	3	1	10	1	0	0	0	0	1	0	0	0	882	1233	43	4	93	4	ARHGAP31	3	119013842	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	108220	119013842	79008588	437	26715											
ARHGAP31	57514	broad.mit.edu	37	chr3	119133386	119133386	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaaccagggaggttgagatCgtctcacaagaagaggagga	14	8	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119133386	T	T	119133386	2	4	10	1	0	0	0	0	0	0	0	1	882	874	31	4		4	ARHGAP31	3	119133386	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	119544	119133386	78889044	438	26716											
KTELC1	56983	broad.mit.edu	37	chr3	119207874	119207874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactttcttggtttccataCtgcttttgaaatagcttcac	5	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119207874	T	T	119207874	1	4	10	0	1	0	0	0	0	0	0	0	8655	580	20	4		4	KTELC1	3	119207874	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	74488	119207874	78814556	439	26717											
C3orf15	89876	broad.mit.edu	37	chr3	119466715	119466715	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggtttatagttttctgatCccagaggtgcaaaaatactt	8	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119466715	T	T	119466715	2	4	10	1	0	0	0	0	0	0	0	1	2231	845	30	4		4	C3orf15	3	119466715	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	258841	119466715	78555715	440	26718											
NDUFB4	4710	broad.mit.edu	37	chr3	120320114	120320114	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaactgagagggtaagtattCagaccagatgtttagtattt	10	4	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120320114	G	G	120320114	1	3	10	0	1	0	0	0	0	0	0	0	10378	827	29	4		4	NDUFB4	3	120320114	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	853399	120320114	77702316	441	26719											
CD86	942	broad.mit.edu	37	chr3	121838334	121838334	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaagcccagcgtgtttttAaaagttcgaagacatcttca	8	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121838334	G	G	121838334	3	3	10	1	0	0	0	0	1	0	0	0	3073	363	13	5	969	5	CD86	3	121838334	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1518220	121838334	76184096	442	26720											
PARP15	165631	broad.mit.edu	37	chr3	122354971	122354971	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttttatcatcaaagagaTgatttaagtcatctgtaaga	6	4	4	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122354971	C	C	122354971	1	2	10	0	1	0	0	0	0	0	0	0	11553	1479	51	5		5	PARP15	3	122354971	3'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	516637	122354971	75667459	443	26721											
PARP14	54625	broad.mit.edu	37	chr3	122419622	122419622	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgggattcagtctgtgttAaaagtgtccatactgataag	10	6	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122419622	G	G	122419622	3	3	10	1	0	0	0	0	1	0	0	0	11552	363	13	5	2243	5	PARP14	3	122419622	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	64651	122419622	75602808	444	26722											
PARP14	54625	broad.mit.edu	37	chr3	122437240	122437240	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagcaatctccccaaaaAaagaatcatttggttttgga	6	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122437240	T	T	122437240	3	4	10	1	0	0	0	0	1	0	0	0	11552	11	1	5	4296	5	PARP14	3	122437240	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	17618	122437240	75585190	445	26723											
PDIA5	10954	broad.mit.edu	37	chr3	122811415	122811415	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgcgatggaaagattccAtctagtgatacttcgaggtc	12	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122811415	G	G	122811415	1	3	10	0	1	0	0	0	0	0	0	0	11765	232	8	5		5	PDIA5	3	122811415	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	374175	122811415	75211015	446	26724											
ADCY5	111	broad.mit.edu	37	chr3	123038571	123038571	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaggaacttgcggacgtGctcagaccgaagcctatcaa	12	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123038571	A	A	123038571	3	1	10	1	0	0	0	0	1	0	0	0	297	1319	46	4	1627	4	ADCY5	3	123038571	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	227156	123038571	74983859	447	26725											
HEG1	57493	broad.mit.edu	37	chr3	124731388	124731388	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccatttctacaaattcacAtgaaccccgagccccatgta	5	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124731388	G	G	124731388	1	3	10	0	1	0	0	0	0	0	0	0	7111	232	8	5		5	HEG1	3	124731388	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1692817	124731388	73291042	448	26726											
ATP2C1	27032	broad.mit.edu	37	chr3	130694302	130694302	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatgtgtaccaacaagagAaggcacgcatgggctcagcg	14	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130694302	C	C	130694302	3	2	10	1	0	0	0	0	1	0	0	0	1147	247	9	5	1606	5	ATP2C1	3	130694302	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	5962914	130694302	67328128	449	26727											
NEK11	79858	broad.mit.edu	37	chr3	130852750	130852750	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actggaactccccattatatGagtcctgaggctctgaaaca	8	11	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130852750	A	A	130852750	3	1	10	1	0	0	0	0	1	0	0	0	10418	1290	45	4	615	4	NEK11	3	130852750	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	158448	130852750	67169680	450	26728											
ACPP	55	broad.mit.edu	37	chr3	132036162	132036162	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacataccaaacctgccctAcgcttcctggaaactttact	4	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132036162	T	T	132036162	1	4	10	0	1	0	0	0	0	0	0	0	167	406	14	5		5	ACPP	3	132036162	5'Flank	SNP	A	TCGA-05-4397-01A-01D-1265-08	1183412	132036162	65986268	451	26729											
BFSP2	8419	broad.mit.edu	37	chr3	133191318	133191318	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcggaggcggagcagcagCaacaggagcgcgcgcatctg	18	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133191318	T	T	133191318	4	4	10	1	0	0	0	0	0	1	0	0	1422	711	25	4	1175	4	BFSP2	3	133191318	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1155156	133191318	64831112	452	26730											
ESYT3	83850	broad.mit.edu	37	chr3	138191516	138191516	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatcggggagaagaagagTccagccaccatcttcctgac	10	14	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138191516	G	G	138191516	3	3	10	1	0	0	0	0	1	0	0	0	5308	1664	58	5	2122	5	ESYT3	3	138191516	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	5000198	138191516	59830914	453	26731											
PIK3CB	5291	broad.mit.edu	37	chr3	138461618	138461618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaggaatcaaattcatGcagacctaaacacatttttt	4	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138461618	T	T	138461618	3	4	10	1	0	0	0	0	1	0	0	0	12009	1319	46	3	2887	3	PIK3CB	3	138461618	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	270102	138461618	59560812	454	26732											
PRR23A	729627	broad.mit.edu	37	chr3	138724871	138724871	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgacgttggcgggagctcCagcaccaggtcgacgtcgtc	14	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138724871	T	T	138724871	2	4	10	1	0	0	0	0	0	0	0	1	12700	581	21	4		4	PRR23A	3	138724871	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	263253	138724871	59297559	455	26733											
MRPS22	56945	broad.mit.edu	37	chr3	139065945	139065945	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagggtttaaacaacatttCtagaggcccctccagatgct	8	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139065945	T	T	139065945	1	4	10	0	1	0	0	0	0	0	0	0	9927	928	32	4		4	MRPS22	3	139065945	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	341074	139065945	58956485	456	26734											
XRN1	54464	broad.mit.edu	37	chr3	142103595	142103595	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattctaggacgataatcgTcaactatcgtaaactatcaa	5	8	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142103595	G	G	142103595	1	3	10	0	1	0	0	0	0	0	0	0	17586	1682	58	5		5	XRN1	3	142103595	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3037650	142103595	55918835	457	26735											
ATR	545	broad.mit.edu	37	chr3	142238719	142238719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcttagttataaaaataCagccataactcattttattg	3	6	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142238719	A	A	142238719	1	1	10	0	1	0	0	0	0	0	0	0	1208	493	17	3		3	ATR	3	142238719	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	135124	142238719	55783711	458	26736											
SR140	23350	broad.mit.edu	37	chr3	142735878	142735878	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgacactgccagtgatacttCcactgtaagcaagactttgg	9	10	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142735878	G	G	142735878	1	3	10	0	1	0	0	0	0	0	0	0	15249	870	30	4		4	SR140	3	142735878	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	497159	142735878	55286552	459	26737											
SLC9A9	285195	broad.mit.edu	37	chr3	143271268	143271268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tataatgtgcttgtgtgactCcacagaagagaacagcaact	9	8	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143271268	A	A	143271268	3	1	10	1	0	0	0	0	1	0	0	0	14835	855	30	3	944	3	SLC9A9	3	143271268	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	535390	143271268	54751162	460	26738											
PLOD2	5352	broad.mit.edu	37	chr3	145790448	145790448	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccaaaagacatctggaCagggctataaaatatgcatc	9	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145790448	G	G	145790448	3	3	10	1	0	0	0	0	1	0	0	0	12197	478	17	4	544	4	PLOD2	3	145790448	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2519180	145790448	52231982	461	26739											
AGTR1	185	broad.mit.edu	37	chr3	148459408	148459408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccctcccgatagggctgGgcctgaccaaaaatatactg	9	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148459408	T	T	148459408	3	4	10	1	0	0	0	0	1	0	0	0	401	1232	43	2	588	2	AGTR1	3	148459408	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2668960	148459408	49563022	462	26740											
CPA3	1359	broad.mit.edu	37	chr3	148604056	148604056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgcaatttaggttagaGcatctggaattgctaattta	8	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148604056	T	T	148604056	1	4	10	0	1	0	0	0	0	0	0	0	3823	986	34	3		3	CPA3	3	148604056	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	144648	148604056	49418374	463	26741											
HPS3	84343	broad.mit.edu	37	chr3	148858404	148858404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttatttatagatttagttaTtcctatttcatgggatttgg	8	3	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148858404	C	C	148858404	1	2	10	0	1	0	0	0	0	0	0	0	7407	1508	52	5		5	HPS3	3	148858404	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	254348	148858404	49164026	464	26742											
CLRN1	7401	broad.mit.edu	37	chr3	150644726	150644726	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtcatgcttggtgacaGccagaacaagaccaagatga	12	9	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150644726	T	T	150644726	1	4	10	0	1	0	0	0	0	0	0	0	3589	986	34	3		3	CLRN1	3	150644726	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	1786322	150644726	47377704	465	26743											
KCNAB1	7881	broad.mit.edu	37	chr3	156009858	156009858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcctggggacgttcacGcctcagcatcacatttctct	9	15	4	0	rs138625130		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156009858	T	T	156009858	1	4	10	0	1	0	0	0	0	0	0	0	8079	1074	38	3		3	KCNAB1	3	156009858	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	5365132	156009858	42012572	466	26744											
GFM1	85476	broad.mit.edu	37	chr3	158399993	158399993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttacttactaaaaacaGtttatcaggtattaaatcat	3	5	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158399993	T	T	158399993	1	4	10	0	1	0	0	0	0	0	0	0	6405	1044	36	3		3	GFM1	3	158399993	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2390135	158399993	39622437	467	26745											
SI	6476	broad.mit.edu	37	chr3	164793678	164793678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatgcttttaatgtactaCttaccatcaacagcaggtgt	7	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164793678	A	A	164793678	1	1	10	0	1	0	0	0	0	0	0	0	14410	580	20	3		3	SI	3	164793678	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	6393685	164793678	33228752	468	26746											
PDCD10	11235	broad.mit.edu	37	chr3	167413436	167413436	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatctcatctgggatcttacTgagaatttgtttaagtgctc	9	7	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167413436	A	A	167413436	3	1	10	1	0	0	0	0	1	0	0	0	11710	1580	55	5	311	5	PDCD10	3	167413436	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2619758	167413436	30608994	469	26747											
PRKCI	5584	broad.mit.edu	37	chr3	169997970	169997970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaaatataatgtactacGcaaagcatttcccattataa	4	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169997970	T	T	169997970	1	4	10	0	1	0	0	0	0	0	0	0	12620	1102	38	3		3	PRKCI	3	169997970	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2584534	169997970	28024460	470	26748											
TNIK	23043	broad.mit.edu	37	chr3	170928949	170928949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttctttttgataaaagCaccatagtatgtagcaatat	8	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170928949	A	A	170928949	3	1	10	1	0	0	0	0	1	0	0	0	16436	710	25	3	3940	3	TNIK	3	170928949	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	930979	170928949	27093481	471	26749											
SPATA16	83893	broad.mit.edu	37	chr3	172835341	172835341	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttgtcatttttgttctttCaagtgtgatttctacctgtt	6	7	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172835341	G	G	172835341	3	3	10	1	0	0	0	0	1	0	0	0	15117	835	29	4	1568	4	SPATA16	3	172835341	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1906392	172835341	25187089	472	26750											
SPATA16	83893	broad.mit.edu	37	chr3	172835417	172835417	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaggatgttaggtgggtgCgctaaggtggacattttctt	14	6	1	0	rs141312480	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172835417	G	G	172835417	2	3	10	1	0	0	0	0	0	0	0	1	15117	755	27	4		4	SPATA16	3	172835417	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	76	172835417	25187013	473	26751											
NLGN1	22871	broad.mit.edu	37	chr3	173997326	173997326	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggagacgaggttccctatgTactgggaatccccatgattg	12	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173997326	C	C	173997326	3	2	10	1	0	0	0	0	1	0	0	0	10556	1638	57	5	1549	5	NLGN1	3	173997326	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1161909	173997326	24025104	474	26752											
NAALADL2	254827	broad.mit.edu	37	chr3	175293949	175293949	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagttcccatcgtgcagtttGcttacgaggacatcaaaaca	9	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175293949	C	C	175293949	3	2	10	1	0	0	0	0	1	0	0	0	10224	1319	46	4	1812	4	NAALADL2	3	175293949	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1296623	175293949	22728481	475	26753											
NAALADL2	254827	broad.mit.edu	37	chr3	175436483	175436483	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttcttgtatttttatagaGatggaagatcacttgaggcg	10	4	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175436483	T	T	175436483	1	4	10	0	1	0	0	0	0	0	0	0	10224	957	33	3		3	NAALADL2	3	175436483	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	142534	175436483	22585947	476	26754											
PIK3CA	5290	broad.mit.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4	rs104886003		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178936091	A	A	178936091	3	1	10	1	0	0	0	0	1	0	0	0	12008	1291	45	4	1667	4	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3499608	178936091	19086339	477	26755											
KCNMB3	27094	broad.mit.edu	37	chr3	178978332	178978332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcttcacctccacctcaCtggctttcctagggtcccat	5	17	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178978332	A	A	178978332	1	1	10	0	1	0	0	0	0	0	0	0	8146	580	20	3		3	KCNMB3	3	178978332	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	42241	178978332	19044098	478	26756											
CCDC39	339829	broad.mit.edu	37	chr3	180378340	180378340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagaaaacctaacagttaCaatttgtaatttctcaccct	4	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180378340	A	A	180378340	1	1	10	0	1	0	0	0	0	0	0	0	2838	493	17	3		3	CCDC39	3	180378340	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1400008	180378340	17644090	479	26757											
CCDC39	339829	broad.mit.edu	37	chr3	180397253	180397253	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccgcgtcaagcccaggcaCctgcacagtgccgcggcaat	11	17	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180397253	T	T	180397253	1	4	10	1	0	0	0	0	0	0	0	0	2838	522	18	4		4	CCDC39	3	180397253	Translation_Start_Site	SNP	C	TCGA-05-4397-01A-01D-1265-08	18913	180397253	17625177	480	26758											
ATP11B	23200	broad.mit.edu	37	chr3	182575779	182575779	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgggatgaaccttggtAtaaccaaaaaacagaacatc	7	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182575779	G	G	182575779	3	3	10	1	0	0	0	0	1	0	0	0	1124	449	16	5	1007	5	ATP11B	3	182575779	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	2178526	182575779	15446651	481	26759											
MCCC1	56922	broad.mit.edu	37	chr3	182733374	182733374	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgcagagacacatgacagGacaaatgatagctgcaatac	10	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182733374	T	T	182733374	1	4	10	0	1	0	0	0	0	0	0	0	9467	1189	41	3		3	MCCC1	3	182733374	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	157595	182733374	15289056	482	26760											
YEATS2	55689	broad.mit.edu	37	chr3	183474351	183474351	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaagcccatcaccattgCctcgaaccccgacttccact	4	20	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183474351	T	T	183474351	3	4	10	1	0	0	0	0	1	0	0	0	17599	739	26	4	1468	4	YEATS2	3	183474351	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	740977	183474351	14548079	483	26761											
ABCC5	10057	broad.mit.edu	37	chr3	183695484	183695484	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaacctgacaccatgaatTtcctctcaggcgctaggaag	9	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183695484	A	A	183695484	1	1	10	0	1	0	0	0	0	0	0	0	56	1856	64	5		5	ABCC5	3	183695484	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	221133	183695484	14326946	484	26762											
VPS8	23355	broad.mit.edu	37	chr3	184714270	184714270	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagacgccaagaaatggctGatgaaataattgtctttagg	11	5	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184714270	A	A	184714270	3	1	10	1	0	0	0	0	1	0	0	0	17345	1290	45	4	3983	4	VPS8	3	184714270	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1018786	184714270	13308160	485	26763											
DNAJB11	51726	broad.mit.edu	37	chr3	186302440	186302440	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtatgtgtgtgtgtgtgaGatgagaaaaggatggcaata	16	1	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186302440	A	A	186302440	1	1	10	0	1	0	0	0	0	0	0	0	4656	957	33	4		4	DNAJB11	3	186302440	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1588170	186302440	11719990	486	26764											
HRG	3273	broad.mit.edu	37	chr3	186387599	186387599	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggtttgagacaagctttGatgaaagaaatgcattttta	10	4	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186387599	C	C	186387599	1	2	10	0	1	0	0	0	0	0	0	0	7421	1305	45	4		4	HRG	3	186387599	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	85159	186387599	11634831	487	26765											
ST6GAL1	6480	broad.mit.edu	37	chr3	186760358	186760358	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagtcacctcatttcaaatCtattgctcagtccatcgctc	4	14	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186760358	G	G	186760358	1	3	10	0	1	0	0	0	0	0	0	0	15339	928	32	4		4	ST6GAL1	3	186760358	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	372759	186760358	11262072	488	26766											
MASP1	5648	broad.mit.edu	37	chr3	186943004	186943004	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcagttggtgagtcaaGcagacactgtcagctgactt	13	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186943004	A	A	186943004	1	1	10	0	1	0	0	0	0	0	0	0	9414	986	34	4		4	MASP1	3	186943004	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	182646	186943004	11079426	489	26767											
LPP	4026	broad.mit.edu	37	chr3	188327238	188327238	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatatggctgccccttcatCaggacaaatttatggctcag	8	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	188327238	G	G	188327238	4	3	10	1	0	0	0	0	0	1	0	0	9010	838	29	4	733	4	LPP	3	188327238	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1384234	188327238	9695192	490	26768											
TP63	8626	broad.mit.edu	37	chr3	189349318	189349318	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaaatgaattttgaaaCttcacggtgtgccaccctac	9	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189349318	T	T	189349318	3	4	10	1	0	0	0	0	1	0	0	0	16516	565	20	4	16	4	TP63	3	189349318	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1022080	189349318	8673112	491	26769											
PYDC2	152138	broad.mit.edu	37	chr3	191179171	191179171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggatggcagccatcCaggtctttgaaaagatgaat	14	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191179171	A	A	191179171	3	1	10	1	0	0	0	0	1	0	0	0	12967	595	21	2	222	2	PYDC2	3	191179171	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1829853	191179171	6843259	492	26770											
ZDHHC19	131540	broad.mit.edu	37	chr3	195935386	195935386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaagaagcggaagttgcGgtgaccgatgcagttattga	14	6	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195935386	A	A	195935386	3	1	10	1	0	0	0	0	1	0	0	0	17735	1116	39	4	491	4	ZDHHC19	3	195935386	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4756215	195935386	2087044	493	26771											
PCYT1A	5130	broad.mit.edu	37	chr3	195975269	195975269	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttttatttttgaggccgaGtctcactctgtcacccaggc	8	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195975269	C	C	195975269	1	2	10	0	1	0	0	0	0	0	0	0	11704	1044	36	4		4	PCYT1A	3	195975269	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	39883	195975269	2047161	494	26772											
KIAA0226	9711	broad.mit.edu	37	chr3	197409236	197409236	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttaaatgaagagaacggtGtgggaaggacagctggaggc	16	5	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197409236	A	A	197409236	1	1	10	0	1	0	0	0	0	0	0	0	8232	1392	48	4		4	KIAA0226	3	197409236	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1433967	197409236	613194	495	26773											
LRCH3	84859	broad.mit.edu	37	chr3	197518272	197518272	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggcaggccctggttttggCccgggctcgtggagccgctc	18	13	0	0	rs146761360	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197518272	G	G	197518272	2	3	10	1	0	0	0	0	0	0	0	1	9021	726	26	4		4	LRCH3	3	197518272	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	109036	197518272	504158	496	26774											
IQCG	84223	broad.mit.edu	37	chr3	197616237	197616237	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaggtatgaggaagccCtaagtcaatggtgtaatcct	11	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197616237	G	G	197616237	1	3	10	0	1	0	0	0	0	0	0	0	7880	696	24	4		4	IQCG	3	197616237	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	97965	197616237	406193	497	26775											
ZNF595	152687	broad.mit.edu	37	chr4	59081	59081	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgttcaaggaggtcacagGacctgctttgcttggttttg	12	7	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59081	T	T	59081	1	4	10	0	1	0	0	0	0	0	0	0	18152	1189	41	3		3	ZNF595	4	59081	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08		59081	191095195	498	26776											
ZNF595	152687	broad.mit.edu	37	chr4	59969	59969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttttgtgatctctaaccCagacctggtcacctgtctgg	10	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59969	A	A	59969	3	1	10	1	0	0	0	0	1	0	0	0	18152	594	21	2	159	2	ZNF595	4	59969	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	888	59969	191094307	499	26777											
KIAA1530	57654	broad.mit.edu	37	chr4	1377501	1377501	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcctgggggcctcgggtaaGaggctctggtcagtgccaga	16	11	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1377501	C	C	1377501	1	2	10	0	1	0	0	0	0	0	0	0	8311	957	33	4		4	KIAA1530	4	1377501	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1317532	1377501	189776775	500	26778											
WHSC1	7468	broad.mit.edu	37	chr4	1962886	1962886	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactatagacaaggtaatgcGgaactccactgtgagcttct	9	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1962886	A	A	1962886	1	1	10	0	1	0	0	0	0	0	0	0	17489	1131	39	4		4	WHSC1	4	1962886	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	585385	1962886	189191390	501	26779											
MFSD10	10227	broad.mit.edu	37	chr4	2935498	2935498	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgtgggcacggccgtggctCtccaacagcccgggcagcag	15	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2935498	G	G	2935498	3	3	10	1	0	0	0	0	1	0	0	0	9621	912	32	4	1262	4	MFSD10	4	2935498	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	972612	2935498	188218778	502	26780											
RGS12	6002	broad.mit.edu	37	chr4	3319858	3319858	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtgactcccagtcaccAgcttgcacagtcctggcttc	11	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3319858	T	T	3319858	1	4	10	0	1	0	0	0	0	0	0	0	13404	203	7	5		5	RGS12	4	3319858	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	384360	3319858	187834418	503	26781											
STK32B	55351	broad.mit.edu	37	chr4	5400080	5400080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagttggacattagcattgGctagaaaccttctcttgttt	9	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5400080	T	T	5400080	1	4	10	0	1	0	0	0	0	0	0	0	15416	1218	42	3		3	STK32B	4	5400080	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2080222	5400080	185754196	504	26782											
ACOX3	8310	broad.mit.edu	37	chr4	8390969	8390969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggatgccgggataggcgtCcagaaagtccactgacttca	12	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8390969	A	A	8390969	3	1	10	1	0	0	0	0	1	0	0	0	160	855	30	3	658	3	ACOX3	4	8390969	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2990889	8390969	182763307	505	26783											
BOD1L	259282	broad.mit.edu	37	chr4	13616150	13616150	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcgactggacaggggaggtCgctgaactcttcagactttg	13	9	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13616150	G	G	13616150	3	3	10	1	0	0	0	0	1	0	0	0	1489	884	31	4	8403	4	BOD1L	4	13616150	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5225181	13616150	177538126	506	26784											
FGFBP1	9982	broad.mit.edu	37	chr4	15937647	15937648	+	Missense_Mutation	DNP	CA	AT	AT													gcagtcttcctctggtttgcCatatctgggtcctccacaca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	15937648	AT	AT	15937647	3	1	10	1	0	0	0	0	1	0	0	0	5917	594	21	2	99	2	FGFBP1	4	15937647	Missense_Mutation	DNP	CA	TCGA-05-4397-01A-01D-1265-08	2321497	15937647	175216629	507	26785											
SLIT2	9353	broad.mit.edu	37	chr4	20525945	20525945	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaataataaaataaagagGactgtagacccaattcaaat	6	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20525945	T	T	20525945	1	4	10	0	1	0	0	0	0	0	0	0	14854	1189	41	3		3	SLIT2	4	20525945	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4588298	20525945	170628331	508	26786											
ANAPC4	29945	broad.mit.edu	37	chr4	25398597	25398597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataagaacctagtaagctGttatgattctcttaaaatca	5	6	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25398597	T	T	25398597	1	4	10	0	1	0	0	0	0	0	0	0	604	1392	48	3		3	ANAPC4	4	25398597	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4872652	25398597	165755679	509	26787											
FAM114A1	92689	broad.mit.edu	37	chr4	38907405	38907405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacagatcagggccctGcagaaagcccacccacttcc	8	18	1	2	rs139238894	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38907405	T	T	38907405	3	4	10	1	0	0	0	0	1	0	0	0	5449	1319	46	3	594	3	FAM114A1	4	38907405	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	13508808	38907405	152246871	510	26788											
ATP8A1	10396	broad.mit.edu	37	chr4	42617947	42617947	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctaccccaaaacaaaaactTgagatgcacactatttgcaa	4	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42617947	A	A	42617947	1	1	10	0	1	0	0	0	0	0	0	0	1196	1827	63	5		5	ATP8A1	4	42617947	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3710542	42617947	148536329	511	26789											
ATP8A1	10396	broad.mit.edu	37	chr4	42628903	42628903	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacactgccaacagggagcTctcaaatattaactgactgc	7	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42628903	A	A	42628903	1	1	10	0	1	0	0	0	0	0	0	0	1196	1566	54	5		5	ATP8A1	4	42628903	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	10956	42628903	148525373	512	26790											
GABRA4	2557	broad.mit.edu	37	chr4	46973002	46973002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattccttattcaggatagcCtgatgtattagggtttaaga	10	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46973002	A	A	46973002	1	1	10	0	1	0	0	0	0	0	0	0	6223	696	24	2		2	GABRA4	4	46973002	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4344099	46973002	144181274	513	26791											
CORIN	10699	broad.mit.edu	37	chr4	47765396	47765396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatctgggttccgaaatacCtgtcatcgccatcaatgatg	8	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47765396	A	A	47765396	3	1	10	1	0	0	0	0	1	0	0	0	3784	695	24	2	2587	2	CORIN	4	47765396	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	792394	47765396	143388880	514	26792											
CWH43	80157	broad.mit.edu	37	chr4	48996751	48996751	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagccttgtgttcctcacCcactgggtttttggagaagt	12	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48996751	A	A	48996751	2	1	10	1	0	0	0	0	0	0	0	1	4106	610	22	2		2	CWH43	4	48996751	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1231355	48996751	142157525	515	26793											
DCUN1D4	23142	broad.mit.edu	37	chr4	52758109	52758109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggtgattgagtgagtGgaaggaagtcaggtggtctg	19	3	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52758109	T	T	52758109	1	4	10	0	1	0	0	0	0	0	0	0	4349	1363	47	2		2	DCUN1D4	4	52758109	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3761358	52758109	138396167	516	26794											
PDGFRA	5156	broad.mit.edu	37	chr4	55130019	55130019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgggaccttcactgtaGggccctatatctgtgaggcc	11	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55130019	T	T	55130019	3	4	10	1	0	0	0	0	1	0	0	0	11755	1000	35	2	563	2	PDGFRA	4	55130019	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2371910	55130019	136024257	517	26795											
KIT	3815	broad.mit.edu	37	chr4	55593834	55593834	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttttctgtgaaattgcgcCccttttgataggtttgccat	9	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55593834	T	T	55593834	1	4	10	0	1	0	0	0	0	0	0	0	8400	638	22	4		4	KIT	4	55593834	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	463815	55593834	135560442	518	26796											
CEP135	9662	broad.mit.edu	37	chr4	56846224	56846224	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgttctttttgtctggtAgcatctttcagtcaatctca	7	8	6	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56846224	T	T	56846224	1	4	10	0	1	0	0	0	0	0	0	0	3277	435	15	5		5	CEP135	4	56846224	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1252390	56846224	134308052	519	26797											
LPHN3	23284	broad.mit.edu	37	chr4	62758560	62758560	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacacaccttccatcagcatCgtcccaaatcccagctctcg	4	19	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62758560	G	G	62758560	3	3	10	1	0	0	0	0	1	0	0	0	9004	893	31	4	1489	4	LPHN3	4	62758560	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5912336	62758560	128395716	520	26798											
LPHN3	23284	broad.mit.edu	37	chr4	62845363	62845390	+	Frame_Shift_Del	DEL	GCATCTTCACATTTTGCTTTTTCCGGGG	-	-													ccttgtttgtctcctgatttGcatcttcacattttgctttt					rs151274984	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62845390	-	-	62845363	7	5	10	1	0	1	0	1	0	0	0	0	9004	1319	46	0	2742	0	LPHN3	4	62845363	Frame_Shift_Del	DEL	GCATCTTCACATTTTGCTTTTTCCGGGG	TCGA-05-4397-01A-01D-1265-08	86803	62845363	128308913	521	26799											
TECRL	253017	broad.mit.edu	37	chr4	65155420	65155420	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaaaagaaaaagaaaaaaGaactaacctgtgtgattggg	10	3	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65155420	T	T	65155420	1	4	10	0	1	0	0	0	0	0	0	0	15868	957	33	3		3	TECRL	4	65155420	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2310057	65155420	125998856	522	26800											
EPHA5	2044	broad.mit.edu	37	chr4	66356361	66356361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaccagtgtcagcaggcGgaatccattccagaaagaca	9	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66356361	T	T	66356361	3	4	10	1	0	0	0	0	1	0	0	0	5212	1116	39	1	2033	1	EPHA5	4	66356361	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1200941	66356361	124797915	523	26801											
EPHA5	2044	broad.mit.edu	37	chr4	66361284	66361284	+	Intron	DEL	A	-	-													gtcaaaagaaataagagactAagcttttccctggaacagat							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66361284	-	-	66361284	6	5	10	0	1	1	0	1	0	0	0	0	5212	377	13	0		0	EPHA5	4	66361284	Intron	DEL	A	TCGA-05-4397-01A-01D-1265-08	4923	66361284	124792992	524	26802											
UBA6	55236	broad.mit.edu	37	chr4	68500215	68500215	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagagtacaaaatggtaTttcctcttctgggggatccc	9	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68500215	C	C	68500215	3	2	10	1	0	0	0	0	1	0	0	0	16958	1493	52	5	1346	5	UBA6	4	68500215	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2138931	68500215	122654061	525	26803											
UBA6	55236	broad.mit.edu	37	chr4	68529668	68529668	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcctctccagtgattcctGataggaaggaaaaagtcatt	9	9	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68529668	C	C	68529668	1	2	10	0	1	0	0	0	0	0	0	0	16958	1305	45	4		4	UBA6	4	68529668	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	29453	68529668	122624608	526	26804											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68797731	68797731	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcagtctgactacttggttCttgatataatttttcttcca	6	8	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68797731	G	G	68797731	3	3	10	1	0	0	0	0	1	0	0	0	16362	912	32	4	984	4	TMPRSS11A	4	68797731	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	268063	68797731	122356545	527	26805											
UGT2B15	7366	broad.mit.edu	37	chr4	69520853	69520853	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccacttgtacagtcgagtAttggaacctaaagtatttgg	9	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69520853	T	T	69520853	3	4	10	1	0	0	0	0	1	0	0	0	17084	446	16	5	2168	5	UGT2B15	4	69520853	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	723122	69520853	121633423	528	26806											
UGT2B4	7363	broad.mit.edu	37	chr4	70352502	70352502	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagagattaacaatgagaaGaacaagggatgttaagtaac	10	3	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70352502	T	T	70352502	1	4	10	0	1	0	0	0	0	0	0	0	17087	957	33	3		3	UGT2B4	4	70352502	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	831649	70352502	120801774	529	26807											
UGT2A1	10941	broad.mit.edu	37	chr4	70460846	70460846	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacttaacttgtctattgtcCcactgtacagcttttctttc	4	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70460846	G	G	70460846	1	3	10	0	1	0	0	0	0	0	0	0	17079	638	22	4		4	UGT2A1	4	70460846	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	108344	70460846	120693430	530	26808											
C4orf35	85438	broad.mit.edu	37	chr4	71201045	71201045	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctacagaaagaaattAcctctctgactggcactaca	5	13	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71201045	G	G	71201045	3	3	10	1	0	0	0	0	1	0	0	0	2288	391	14	5	291	5	C4orf35	4	71201045	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	740199	71201045	119953231	531	26809											
SMR3A	26952	broad.mit.edu	37	chr4	71227800	71227800	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaatcatactgatcacCtattgtgcttactttcagag	5	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71227800	T	T	71227800	1	4	10	0	1	0	0	0	0	0	0	0	14925	696	24	4		4	SMR3A	4	71227800	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	26755	71227800	119926476	532	26810											
ENAM	10117	broad.mit.edu	37	chr4	71498515	71498515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaatccacatgttttaagtAtaatgtaatcattacaaaag	4	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71498515	G	G	71498515	1	3	10	0	1	0	0	0	0	0	0	0	5154	464	16	5		5	ENAM	4	71498515	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	270715	71498515	119655761	533	26811											
GC	2638	broad.mit.edu	37	chr4	72623761	72623761	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taataaagcttgtcttacctCtttggccatgcaatcttcag	6	10	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72623761	A	A	72623761	4	1	10	1	0	0	0	0	0	1	0	0	6344	922	32	3	619	3	GC	4	72623761	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1125246	72623761	118530515	534	26812											
ANKRD17	26057	broad.mit.edu	37	chr4	74043232	74043232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attttccaaatcatcctgatCcaaaatgaaagactccacct	3	12	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74043232	A	A	74043232	3	1	10	1	0	0	0	0	1	0	0	0	646	855	30	3	7531	3	ANKRD17	4	74043232	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1419471	74043232	117111044	535	26813											
AFM	173	broad.mit.edu	37	chr4	74357558	74357558	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaacccagcctgaaagTaaaataatctctcattctta	4	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74357558	C	C	74357558	1	2	10	0	1	0	0	0	0	0	0	0	361	1653	57	5		5	AFM	4	74357558	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	314326	74357558	116796718	536	26814											
PF4	5196	broad.mit.edu	37	chr4	74847081	74847081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattagaagggggagggttGggcagaggaggcacggagcg	22	5	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74847081	T	T	74847081	1	4	10	0	1	0	0	0	0	0	0	0	11847	1363	47	2		2	PF4	4	74847081	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	489523	74847081	116307195	537	26815											
RCHY1	25898	broad.mit.edu	37	chr4	76439535	76439535	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattccaccgatccttccccCaggataaaaaccacgcccag	5	18	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76439535	A	A	76439535	1	1	10	0	1	0	0	0	0	0	0	0	13285	609	21	2		2	RCHY1	4	76439535	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	1592454	76439535	114714741	538	26816											
PPEF2	5470	broad.mit.edu	37	chr4	76804054	76804054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgggcattatggtgaaaTttgtattatttcattaacca	7	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76804054	A	A	76804054	1	1	10	0	1	0	0	0	0	0	0	0	12404	1508	52	5		5	PPEF2	4	76804054	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	364519	76804054	114350222	539	26817											
ART3	419	broad.mit.edu	37	chr4	76943236	76943236	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcattcattatggattatAggggttgcttttttcaacca	8	6	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76943236	T	T	76943236	1	4	10	0	1	0	0	0	0	0	0	0	1002	435	15	5		5	ART3	4	76943236	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	139182	76943236	114211040	540	26818											
MRPL1	65008	broad.mit.edu	37	chr4	78871187	78871188	+	Intron	DNP	GG	TT	TT													atgcaagttttatatttccaGggattaaataaataaaattt							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	78871188	TT	TT	78871187	1	4	10	0	1	0	0	0	0	0	0	0	9868	1015	35	2		2	MRPL1	4	78871187	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	1927951	78871187	112283089	541	26819											
FRAS1	80144	broad.mit.edu	37	chr4	79403083	79403083	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgactacgttcccagctctCggaaggtggaatttgggcct	12	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79403083	T	T	79403083	3	4	10	1	0	0	0	0	1	0	0	0	6102	875	31	4	8870	4	FRAS1	4	79403083	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	531896	79403083	111751193	542	26820											
SCD5	79966	broad.mit.edu	37	chr4	83602054	83602054	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggtggtccctggaccactcGaagatgtcattctgcagaga	12	11	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83602054	A	A	83602054	2	1	10	1	0	0	0	0	0	0	0	1	13999	1049	37	4		4	SCD5	4	83602054	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	4198971	83602054	107552222	543	26821											
WDFY3	23001	broad.mit.edu	37	chr4	85701338	85701338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaccagggccttgactgCtgcatataacccttccacat	6	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85701338	A	A	85701338	3	1	10	1	0	0	0	0	1	0	0	0	17397	797	28	3	6464	3	WDFY3	4	85701338	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2099284	85701338	105452938	544	26822											
PPM1K	152926	broad.mit.edu	37	chr4	89192290	89192290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttccactgaagccccgCatatagtgtccacgggctcc	8	16	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89192290	A	A	89192290	1	1	10	0	1	0	0	0	0	0	0	0	12444	725	25	3		3	PPM1K	4	89192290	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3490952	89192290	101961986	545	26823											
HERC6	55008	broad.mit.edu	37	chr4	89311943	89311943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgccggaggggctcaCagctttgccctgtctctctg	14	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89311943	A	A	89311943	3	1	10	1	0	0	0	0	1	0	0	0	7129	477	17	3	387	3	HERC6	4	89311943	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	119653	89311943	101842333	546	26824											
HERC6	55008	broad.mit.edu	37	chr4	89338598	89338598	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtgttgggcatttttgcAagaatcttctctgaatccgc	10	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89338598	C	C	89338598	3	2	10	1	0	0	0	0	1	0	0	0	7129	130	5	5	1427	5	HERC6	4	89338598	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	26655	89338598	101815678	547	26825											
HERC5	51191	broad.mit.edu	37	chr4	89393078	89393078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcttttttctatggcccGcccttcttccctcccttctt	3	16	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89393078	T	T	89393078	1	4	10	0	1	0	0	0	0	0	0	0	7128	1102	38	3		3	HERC5	4	89393078	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	54480	89393078	101761198	548	26826											
FAM13A	10144	broad.mit.edu	37	chr4	89950552	89950552	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaaataattcacacaaAtaatttgtttatgcaaggga	6	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89950552	G	G	89950552	1	3	10	0	1	0	0	0	0	0	0	0	5498	116	4	5		5	FAM13A	4	89950552	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	557474	89950552	101203724	549	26827											
MMRN1	22915	broad.mit.edu	37	chr4	90874329	90874329	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtatatgttttcaagtaCaccatcgagtcatttagtgc	9	7	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90874329	A	A	90874329	4	1	10	1	0	0	0	0	0	1	0	0	9764	489	17	3	3477	3	MMRN1	4	90874329	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	923777	90874329	100279947	550	26828											
FAM190A	401145	broad.mit.edu	37	chr4	91760334	91760334	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttgagaaatattattatGatctttgtctaagaagccta	6	5	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91760334	T	T	91760334	1	4	10	0	1	0	0	0	0	0	0	0	5568	1305	45	3		3	FAM190A	4	91760334	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	886005	91760334	99393942	551	26829											
GRID2	2895	broad.mit.edu	37	chr4	94137997	94137997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acataagtcagcggtgtttcCgtggcaaccatcgaatatct	9	10	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94137997	T	T	94137997	3	4	10	1	0	0	0	0	1	0	0	0	6838	652	23	4	920	4	GRID2	4	94137997	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2377663	94137997	97016279	552	26830											
GRID2	2895	broad.mit.edu	37	chr4	94547753	94547753	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagttgttcaataagacactCattacctaaaacatgaagta	5	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94547753	A	A	94547753	1	1	10	0	1	0	0	0	0	0	0	0	6838	841	29	3		3	GRID2	4	94547753	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	409756	94547753	96606523	553	26831											
ADH1A	124	broad.mit.edu	37	chr4	100242433	100242433	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctttctttgttatattgatGagaatatattaccaacagta	5	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100242433	T	T	100242433	1	4	10	0	1	0	0	0	0	0	0	0	307	1305	45	3		3	ADH1A	4	100242433	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	5694680	100242433	90911843	554	26832											
ARHGEF38	54848	broad.mit.edu	37	chr4	106473981	106473981	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaagaaaaagaatctggCcttcttgaggtctagactct	8	10	4	4	rs147662568		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106473981	T	T	106473981	3	4	10	1	0	0	0	0	1	0	0	0	909	739	26	4	61	4	ARHGEF38	4	106473981	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	6231548	106473981	84680295	555	26833											
COL25A1	84570	broad.mit.edu	37	chr4	109774125	109774125	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacagagttatctattttgTgtgccaaagtacagtaatac	8	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109774125	C	C	109774125	1	2	10	0	1	0	0	0	0	0	0	0	3716	1711	59	5		5	COL25A1	4	109774125	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3300144	109774125	81380151	556	26834											
LRIT3	345193	broad.mit.edu	37	chr4	110791278	110791278	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttaaaggtggcaaagaatgGaagtaagcttcctccagcca	10	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110791278	A	A	110791278	3	1	10	1	0	0	0	0	1	0	0	0	9036	1174	41	4	1248	4	LRIT3	4	110791278	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1017153	110791278	80362998	557	26835											
ALPK1	80216	broad.mit.edu	37	chr4	113279450	113279450	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtccctacgtcagggtgtaCaacttcggccatgtcatcca	9	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113279450	T	T	113279450	1	4	10	0	1	0	0	0	0	0	0	0	544	493	17	4		4	ALPK1	4	113279450	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2488172	113279450	77874826	558	26836											
C4orf21	55345	broad.mit.edu	37	chr4	113554393	113554393	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaatattcaactatttaTaccacctaaaattaaaaatg	3	6	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113554393	C	C	113554393	1	2	10	0	1	0	0	0	0	0	0	0	2277	1421	49	5		5	C4orf21	4	113554393	5'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	274943	113554393	77599883	559	26837											
ANK2	287	broad.mit.edu	37	chr4	114253262	114253262	+	Intron	DEL	C	-	-													aacaaattgatggctgctggCcccccattcttctccttctt							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114253262	-	-	114253262	6	5	10	0	1	1	0	1	0	0	0	0	621	754	26	0		0	ANK2	4	114253262	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	698869	114253262	76901014	560	26838											
NDST4	64579	broad.mit.edu	37	chr4	115773903	115773903	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttttgtggaccaattacTagaaattttggtaagtggtc	10	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115773903	A	A	115773903	2	1	10	1	0	0	0	0	0	0	0	1	10353	1509	53	5		5	NDST4	4	115773903	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	1520641	115773903	75380373	561	26839											
EXOSC9	5393	broad.mit.edu	37	chr4	122722599	122722599	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgaaggaaacgccactctCaaactgcgaacgccgcttcc	8	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122722599	G	G	122722599	4	3	10	1	0	0	0	0	0	1	0	0	5364	838	29	4	22	4	EXOSC9	4	122722599	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	6948696	122722599	68431677	562	26840											
KIAA1109	84162	broad.mit.edu	37	chr4	123175388	123175388	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgatttgaaaaaagatctAcctctgatgcctcctcctcc	6	12	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123175388	G	G	123175388	2	3	10	1	0	0	0	0	0	0	0	1	8278	378	14	5		5	KIAA1109	4	123175388	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	452789	123175388	67978888	563	26841											
ANKRD50	57182	broad.mit.edu	37	chr4	125599798	125599798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagttcattaatgaaaagCatttaaggatggcagtaagt	9	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125599798	A	A	125599798	1	1	10	0	1	0	0	0	0	0	0	0	677	725	25	3		3	ANKRD50	4	125599798	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2424410	125599798	65554478	564	26842											
NDUFC1	4717	broad.mit.edu	37	chr4	140216334	140216334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtctgtaaatttgtaacTtactgccttgtagggaaaaa	10	5	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140216334	C	C	140216334	1	2	10	0	1	0	0	0	0	0	0	0	10384	1624	56	5		5	NDUFC1	4	140216334	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	14616536	140216334	50937942	565	26843											
INPP4B	8821	broad.mit.edu	37	chr4	143129922	143129922	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttttaagatgttaaagttaGaaataaaagagttttaaaaa	7	0	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143129922	C	C	143129922	1	2	10	0	1	0	0	0	0	0	0	0	7823	957	33	4		4	INPP4B	4	143129922	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2913588	143129922	48024354	566	26844											
PET112L	5188	broad.mit.edu	37	chr4	152640682	152640682	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgcttctacacacctcctGttgagaacctatgggaacac	8	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152640682	C	C	152640682	3	2	10	1	0	0	0	0	1	0	0	0	11828	1368	48	4	1381	4	PET112L	4	152640682	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	9510760	152640682	38513594	567	26845											
FBXW7	55294	broad.mit.edu	37	chr4	153303398	153303398	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaatgctaaatatcttcatCacagtttgatgtggtagagg	9	6	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153303398	G	G	153303398	1	3	10	0	1	0	0	0	0	0	0	0	5826	813	29	4		4	FBXW7	4	153303398	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	662716	153303398	37850878	568	26846											
TRIM2	23321	broad.mit.edu	37	chr4	154236944	154236944	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccttcctcagcaatgcctGtactagttcacattccaatg	6	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154236944	C	C	154236944	1	2	10	0	1	0	0	0	0	0	0	0	16618	1392	48	4		4	TRIM2	4	154236944	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	933546	154236944	36917332	569	26847											
TDO2	6999	broad.mit.edu	37	chr4	156831336	156831336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctacttaaatctgagcaGgaaaagacacttctggaatt	8	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156831336	T	T	156831336	3	4	10	1	0	0	0	0	1	0	0	0	15849	991	35	2	613	2	TDO2	4	156831336	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2594392	156831336	34322940	570	26848											
TDO2	6999	broad.mit.edu	37	chr4	156841118	156841118	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatactgtgatagctcctaCttcagcagtgatgaatcaga	9	8	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156841118	A	A	156841118	4	1	10	1	0	0	0	0	0	1	0	0	15849	576	20	3	1243	3	TDO2	4	156841118	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	9782	156841118	34313158	571	26849											
FAM198B	51313	broad.mit.edu	37	chr4	159076790	159076790	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaatcaaagagtgccatCttggaccactcatgatgatg	8	8	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159076790	T	T	159076790	2	4	10	1	0	0	0	0	0	0	0	1	5576	912	32	4		4	FAM198B	4	159076790	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	2235672	159076790	32077486	572	26850											
MARCH1	55016	broad.mit.edu	37	chr4	165110554	165110554	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggtctactatgaggcctgtCcagaaagtgttggaaaattc	11	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165110554	G	G	165110554	1	3	10	0	1	0	0	0	0	0	0	0	9390	870	30	4		4	MARCH1	4	165110554	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	6033764	165110554	26043722	573	26851											
ANP32C	23520	broad.mit.edu	37	chr4	165118554	165118554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttctaactgtttcagtgGctctattgtgctgaggtctt	10	7	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165118554	T	T	165118554	3	4	10	1	0	0	0	0	1	0	0	0	707	1203	42	3	397	3	ANP32C	4	165118554	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	8000	165118554	26035722	574	26852											
TMEM192	201931	broad.mit.edu	37	chr4	166009572	166009572	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactttaaactgggaggaaaGgaagcagttcgaagttccta	11	6	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166009572	C	C	166009572	1	2	10	0	1	0	0	0	0	0	0	0	16238	1015	35	4		4	TMEM192	4	166009572	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	891018	166009572	25144704	575	26853											
CBR4	84869	broad.mit.edu	37	chr4	169923276	169923276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctacctctttagcaagagCacgtgaaaatccaactaatc	6	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169923276	A	A	169923276	3	1	10	1	0	0	0	0	1	0	0	0	2736	710	25	3	240	3	CBR4	4	169923276	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3913704	169923276	21231000	576	26854											
C4orf27	54969	broad.mit.edu	37	chr4	170652852	170652852	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtggagggtttttttactCacatgtgagccatagcaaaa	11	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170652852	G	G	170652852	1	3	10	0	1	0	0	0	0	0	0	0	2281	841	29	4		4	C4orf27	4	170652852	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	729576	170652852	20501424	577	26855			2	27		5	5	228	C		1.468176e-09
C4orf27	54969	broad.mit.edu	37	chr4	170652908	170652908	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaagccccatgccataatCacattcatcattagcaaact	3	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170652908	G	G	170652908	3	3	10	1	0	0	0	0	1	0	0	0	2281	826	29	4	192	4	C4orf27	4	170652908	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	56	170652908	20501368	578	26856			2	27		5	5	228	C		1.468176e-09
C4orf27	54969	broad.mit.edu	37	chr4	170652995	170652995	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctcatcacttgcagcctCaactattgtcttgcaaattc	4	14	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170652995	G	G	170652995	3	3	10	1	0	0	0	0	1	0	0	0	2281	835	29	4	279	4	C4orf27	4	170652995	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	87	170652995	20501281	579	26857			2	27		5	5	228	C		1.468176e-09
C4orf27	54969	broad.mit.edu	37	chr4	170653039	170653039	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaggtcagctgaaagaaatCaataatataaaagattatct	7	4	3	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170653039	T	T	170653039	1	4	10	0	1	0	0	0	0	0	0	0	2281	841	29	4		4	C4orf27	4	170653039	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	44	170653039	20501237	580	26858			2	27		5	5	228	C		1.468176e-09
C4orf27	54969	broad.mit.edu	37	chr4	170653079	170653079	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacatagttagaaaatgaatCagtcttcaaaagtaagaaga	7	4	3	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170653079	T	T	170653079	1	4	10	0	1	0	0	0	0	0	0	0	2281	841	29	4		4	C4orf27	4	170653079	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	40	170653079	20501197	581	26859			2	27		5	5	228	C		1.468176e-09
MORF4	10934	broad.mit.edu	37	chr4	174537112	174537112	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctttccgatggtactcaGgaagagccacttcataatcg	9	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174537112	A	A	174537112	3	1	10	1	0	0	0	0	1	0	0	0	9799	1000	35	4	27	4	MORF4	4	174537112	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3884033	174537112	16617164	582	26860											
WDR17	116966	broad.mit.edu	37	chr4	177100852	177100852	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattgcaggttgggagagGtgggaaatagcagtgaattt	17	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177100852	T	T	177100852	1	4	10	0	1	0	0	0	0	0	0	0	17404	1276	44	3		3	WDR17	4	177100852	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	2563740	177100852	14053424	583	26861											
ASB5	140458	broad.mit.edu	37	chr4	177138215	177138215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagttgttaaataagccaGctgcctcagtggggatagaa	11	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177138215	T	T	177138215	1	4	10	0	1	0	0	0	0	0	0	0	1030	986	34	3		3	ASB5	4	177138215	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	37363	177138215	14016061	584	26862											
ODZ3	55714	broad.mit.edu	37	chr4	183635384	183635384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatagcaaggacaatgaagGaggtaagaaatactgagcat	12	4	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183635384	T	T	183635384	3	4	10	1	0	0	0	0	1	0	0	0	10931	1174	41	3	2412	3	ODZ3	4	183635384	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	6497169	183635384	7518892	585	26863											
DCTD	1635	broad.mit.edu	37	chr4	183836049	183836049	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaggctatgtcactaagCagaatgggacataaaacttg	9	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183836049	T	T	183836049	1	4	10	0	1	0	0	0	0	0	0	0	4338	725	25	4		4	DCTD	4	183836049	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	200665	183836049	7318227	586	26864											
FAM149A	25854	broad.mit.edu	37	chr4	187077213	187077213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggaaatggcgcaaactcgGacttcctcctgtttccccgc	9	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187077213	T	T	187077213	3	4	10	1	0	0	0	0	1	0	0	0	5501	1174	41	3	457	3	FAM149A	4	187077213	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3241164	187077213	4077063	587	26865											
F11	2160	broad.mit.edu	37	chr4	187206814	187206814	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagtcacctaagattttgCgtgtctacagtggcatttta	9	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187206814	T	T	187206814	3	4	10	1	0	0	0	0	1	0	0	0	5380	768	27	4	1369	4	F11	4	187206814	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	129601	187206814	3947462	588	26866											
ADAMTS16	170690	broad.mit.edu	37	chr5	5146429	5146429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagcagcctagtggctcCtggctttattgtgcagacgt	11	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5146429	A	A	5146429	3	1	10	1	0	0	0	0	1	0	0	0	261	681	24	2	372	2	ADAMTS16	5	5146429	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08		5146429	175768831	589	26867											
ADCY2	108	broad.mit.edu	37	chr5	7727279	7727279	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttctccccctcagtaCcgggccacggcactgccagc	8	19	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7727279	A	A	7727279	4	1	10	1	0	0	0	0	0	1	0	0	294	518	18	3	1830	3	ADCY2	5	7727279	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2580850	7727279	173187981	590	26868											
MTRR	4552	broad.mit.edu	37	chr5	7897074	7897075	+	Intron	DNP	TG	AC	AC													gggattatctattcaggtatTgtacaattccagtattgtac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	7897075	AC	AC	7897074	1	1	10	0	1	0	0	0	0	0	0	0	10055	1827	63	5		5	MTRR	5	7897074	Intron	DNP	TG	TCGA-05-4397-01A-01D-1265-08	169795	7897074	173018186	591	26869											
DNAH5	1767	broad.mit.edu	37	chr5	13751251	13751251	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacctttcatggtgacagtgAagtcaatgatggaggtacgg	14	6	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13751251	C	C	13751251	3	2	10	1	0	0	0	0	1	0	0	0	4644	246	9	5	2787	5	DNAH5	5	13751251	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	5854177	13751251	167164009	592	26870											
DNAH5	1767	broad.mit.edu	37	chr5	13823414	13823414	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcagggtaacctgccttGtccagaagaatatttggaaa	10	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13823414	A	A	13823414	2	1	10	1	0	0	0	0	0	0	0	1	4644	1368	48	4		4	DNAH5	5	13823414	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	72163	13823414	167091846	593	26871											
MARCH11	441061	broad.mit.edu	37	chr5	16067851	16067851	+	Frame_Shift_Del	DEL	C	-	-													cccagtgcaaattcacagctCgccagcgcttaaacactctg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16067851	-	-	16067851	7	5	10	1	0	1	0	1	0	0	0	0	9392	884	31	0	274	0	MARCH11	5	16067851	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08	2244437	16067851	164847409	594	26872											
FAM134B	54463	broad.mit.edu	37	chr5	16508688	16508688	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtatatatcacaattaccTtttgcctggtccaaagtctt	5	10	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16508688	C	C	16508688	1	2	10	0	1	0	0	0	0	0	0	0	5492	1623	56	5		5	FAM134B	5	16508688	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	440837	16508688	164406572	595	26873											
PRDM9	56979	broad.mit.edu	37	chr5	23522710	23522710	+	Intron	DEL	C	-	-													aactttcctaatctctgcttCcctcacttccagattgtgag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23522710	-	-	23522710	6	5	10	0	1	1	0	1	0	0	0	0	12569	870	30	0		0	PRDM9	5	23522710	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	7014022	23522710	157392550	596	26874											
PRDM9	56979	broad.mit.edu	37	chr5	23522995	23522995	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatggatactcctggctgGtaagaagagcctgccatttc	10	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23522995	T	T	23522995	5	4	10	1	0	0	0	0	0	0	1	0	12569	1275	44	3	909	3	PRDM9	5	23522995	Splice_Site	SNP	G	TCGA-05-4397-01A-01D-1265-08	285	23522995	157392265	597	26875											
CDH10	1008	broad.mit.edu	37	chr5	24511577	24511577	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgctttgacacttccaatGgctgtgccaactggggagga	13	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24511577	T	T	24511577	2	4	10	1	0	0	0	0	0	0	0	1	3126	1335	47	2		2	CDH10	5	24511577	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	988582	24511577	156403683	598	26876											
CDH9	1007	broad.mit.edu	37	chr5	26885756	26885756	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacacagagtagaatcgcaaCgagagctcccgtgctcaggc	12	12	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26885756	G	G	26885756	3	3	10	1	0	0	0	0	1	0	0	0	3147	536	19	4	528	4	CDH9	5	26885756	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2374179	26885756	154029504	599	26877											
C5orf22	55322	broad.mit.edu	37	chr5	31538419	31538419	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtctgtatgtacctgaaGaccagctagagaaccaaaaa	9	8	1	3	rs142150259		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31538419	T	T	31538419	3	4	10	1	0	0	0	0	1	0	0	0	2308	942	33	3	444	3	C5orf22	5	31538419	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4652663	31538419	149376841	600	26878											
PDZD2	23037	broad.mit.edu	37	chr5	31799670	31799670	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcgcagggggggcaagaaGaggaaaacccaccagggtcc	16	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31799670	C	C	31799670	3	2	10	1	0	0	0	0	1	0	0	0	11795	933	33	4	317	4	PDZD2	5	31799670	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	261251	31799670	149115590	601	26879											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576960	33576960	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccaggtctccttctttGgaggctgtggtaggactagg	13	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33576960	T	T	33576960	2	4	10	1	0	0	0	0	0	0	0	1	257	1335	47	2		2	ADAMTS12	5	33576960	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1777290	33576960	147338300	602	26880											
ADAMTS12	81792	broad.mit.edu	37	chr5	33637612	33637612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtggatcacagaaaccCtgactgacatacaaatgctt	8	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33637612	A	A	33637612	1	1	10	0	1	0	0	0	0	0	0	0	257	696	24	2		2	ADAMTS12	5	33637612	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	60652	33637612	147277648	603	26881											
RAI14	26064	broad.mit.edu	37	chr5	34814884	34814884	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatacttctgaatcattggtTcacaaccttttcaccatgaa	4	10	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34814884	A	A	34814884	1	1	10	0	1	0	0	0	0	0	0	0	13116	1798	62	5		5	RAI14	5	34814884	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1177272	34814884	146100376	604	26882											
NIPBL	25836	broad.mit.edu	37	chr5	37027440	37027440	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaatatacttctaactttGattcttttcatcacccttag	2	9	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37027440	C	C	37027440	1	2	10	0	1	0	0	0	0	0	0	0	10523	1305	45	4		4	NIPBL	5	37027440	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2212556	37027440	143887820	605	26883											
NUP155	9631	broad.mit.edu	37	chr5	37328457	37328457	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaacaaagaaaagaggTaccatgagacggtgttccca	9	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37328457	A	A	37328457	1	1	10	0	1	0	0	0	0	0	0	0	10851	1653	57	5		5	NUP155	5	37328457	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	301017	37328457	143586803	606	26884											
EGFLAM	133584	broad.mit.edu	37	chr5	38438275	38438275	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttaaaaaaattttttttcaAtctccctatgtgtagctcag	4	8	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38438275	T	T	38438275	1	4	10	0	1	0	0	0	0	0	0	0	5006	116	4	5		5	EGFLAM	5	38438275	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1109818	38438275	142476985	607	26885											
C9	735	broad.mit.edu	37	chr5	39288979	39288979	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattgatatagtcttcaatGgctctttccaagttttgttt	6	7	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39288979	A	A	39288979	2	1	10	1	0	0	0	0	0	0	0	1	2469	1335	47	4		4	C9	5	39288979	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	850704	39288979	141626281	608	26886											
C7	730	broad.mit.edu	37	chr5	40937675	40937675	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaatgaactcactggccaGtttaggaacagagtcatcaa	8	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40937675	T	T	40937675	3	4	10	1	0	0	0	0	1	0	0	0	2400	1020	36	3	472	3	C7	5	40937675	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1648696	40937675	139977585	609	26887											
HEATR7B2	133558	broad.mit.edu	37	chr5	40998313	40998313	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagagtcagagcccagcaAgaagggcaaaccaagccaag	13	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40998313	G	G	40998313	1	3	10	0	1	0	0	0	0	0	0	0	7102	87	3	5		5	HEATR7B2	5	40998313	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	60638	40998313	139916947	610	26888											
C6	729	broad.mit.edu	37	chr5	41149636	41149636	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagatcagaaaaaaacaGggggcacgtagccaatgtag	12	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41149636	A	A	41149636	1	1	10	0	1	0	0	0	0	0	0	0	2338	1015	35	4		4	C6	5	41149636	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	151323	41149636	139765624	611	26889											
GHR	2690	broad.mit.edu	37	chr5	42468460	42468460	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggggaacgcctatagctggGagctgcccagcacaggtcaa	14	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42468460	A	A	42468460	1	1	10	0	1	0	0	0	0	0	0	0	6435	1189	41	4		4	GHR	5	42468460	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1318824	42468460	138446800	612	26890											
HMGCS1	3157	broad.mit.edu	37	chr5	43292879	43292879	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaagtcttgatatccttatCgtatatgtagcatccttaat	5	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43292879	T	T	43292879	1	4	10	0	1	0	0	0	0	0	0	0	7299	899	31	4		4	HMGCS1	5	43292879	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	824419	43292879	137622381	613	26891											
HCN1	348980	broad.mit.edu	37	chr5	45645362	45645362	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agactgagaatttttgtaaaCctcacaatgcgaagtgccct	8	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45645362	G	G	45645362	3	3	10	1	0	0	0	0	1	0	0	0	7062	506	18	4	1926	4	HCN1	5	45645362	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2352483	45645362	135269898	614	26892											
ITGA1	3672	broad.mit.edu	37	chr5	52218465	52218465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctccagggaagcaaaagCctgatgagatcatatgtcag	10	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52218465	A	A	52218465	1	1	10	0	1	0	0	0	0	0	0	0	7942	754	26	3		3	ITGA1	5	52218465	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	6573103	52218465	128696795	615	26893											
DDX4	54514	broad.mit.edu	37	chr5	55056085	55056085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtggatttgcctctgGgcggaattttggaaacagag	14	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55056085	T	T	55056085	3	4	10	1	0	0	0	0	1	0	0	0	4393	1232	43	2	195	2	DDX4	5	55056085	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2837620	55056085	125859175	616	26894											
GPBP1	65056	broad.mit.edu	37	chr5	56526587	56526587	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttaatcatttaaaattttTggaaataagtgaagttggag	8	2	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56526587	G	G	56526587	1	3	10	0	1	0	0	0	0	0	0	0	6660	1827	63	5		5	GPBP1	5	56526587	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1470502	56526587	124388673	617	26895											
ERCC8	1161	broad.mit.edu	37	chr5	60240949	60240949	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatatatccggccaatggtGagcgccgttactagaagggc	13	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60240949	C	C	60240949	1	2	10	0	1	0	0	0	0	0	0	0	5261	1305	45	4		4	ERCC8	5	60240949	5'Flank	SNP	G	TCGA-05-4397-01A-01D-1265-08	3714362	60240949	120674311	618	26896											
DIMT1L	27292	broad.mit.edu	37	chr5	61686583	61686583	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactattccatgccatggaaGtgctatgcaataactctccc	6	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61686583	C	C	61686583	1	2	10	0	1	0	0	0	0	0	0	0	4563	1044	36	4		4	DIMT1L	5	61686583	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1445634	61686583	119228677	619	26897											
CENPH	64946	broad.mit.edu	37	chr5	68493000	68493000	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catagtgactttagttttgtGaattttaaaaaattattact	5	3	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68493000	T	T	68493000	1	4	10	0	1	0	0	0	0	0	0	0	3262	1305	45	3		3	CENPH	5	68493000	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6806417	68493000	112422260	620	26898											
ANKRA2	57763	broad.mit.edu	37	chr5	72851384	72851384	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcagaggagtaaatccttCttcatccgtgtgattgataa	8	8	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72851384	T	T	72851384	3	4	10	1	0	0	0	0	1	0	0	0	636	922	32	4	420	4	ANKRA2	5	72851384	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	4358384	72851384	108063876	621	26899											
FAM169A	26049	broad.mit.edu	37	chr5	74130458	74130458	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaccaggcacagcagttaTaatatgcatcaatcacaaga	6	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74130458	A	A	74130458	1	1	10	0	1	0	0	0	0	0	0	0	5532	1421	49	5		5	FAM169A	5	74130458	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1279074	74130458	106784802	622	26900											
AP3B1	8546	broad.mit.edu	37	chr5	77385316	77385316	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgcaactggagtggatacTgggttaactgtaagaaaagg	14	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77385316	A	A	77385316	2	1	10	1	0	0	0	0	0	0	0	1	746	1567	55	5		5	AP3B1	5	77385316	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	3254858	77385316	103529944	623	26901											
ARSB	411	broad.mit.edu	37	chr5	78260464	78260464	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacgaaaatagtcagcatagCataaaacttgttaaacaaac	6	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78260464	G	G	78260464	1	3	10	0	1	0	0	0	0	0	0	0	992	725	25	4		4	ARSB	5	78260464	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	875148	78260464	102654796	624	26902											
DMGDH	29958	broad.mit.edu	37	chr5	78340017	78340017	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctccaatgtcccaggtaTctgaaagtctagtattatgt	7	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78340017	A	A	78340017	1	1	10	0	1	0	0	0	0	0	0	0	4621	1450	50	5		5	DMGDH	5	78340017	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	79553	78340017	102575243	625	26903											
VCAN	1462	broad.mit.edu	37	chr5	82843744	82843744	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacactaaatggaattctttGatactttttgaaagtatttt	5	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82843744	A	A	82843744	1	1	10	0	1	0	0	0	0	0	0	0	17265	1305	45	4		4	VCAN	5	82843744	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4503727	82843744	98071516	626	26904											
HAPLN1	1404	broad.mit.edu	37	chr5	82940463	82940463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgtagcgccccagtcgtGgaaagtaagggaataccaca	12	9	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82940463	T	T	82940463	3	4	10	1	0	0	0	0	1	0	0	0	7020	1348	47	2	578	2	HAPLN1	5	82940463	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	96719	82940463	97974797	627	26905											
HAPLN1	1404	broad.mit.edu	37	chr5	82940554	82940554	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagcaaatgccacctaGttggtgaaaaacctaacaga	8	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82940554	A	A	82940554	1	1	10	0	1	0	0	0	0	0	0	0	7020	1044	36	4		4	HAPLN1	5	82940554	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	91	82940554	97974706	628	26906											
GPR98	84059	broad.mit.edu	37	chr5	90119264	90119264	+	Frame_Shift_Del	DEL	T	-	-													cctttgaagatgtcaaggtcTtttggcgagtcacacttaac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90119264	-	-	90119264	7	5	10	1	0	1	0	1	0	0	0	0	6787	1609	56	0	16521	0	GPR98	5	90119264	Frame_Shift_Del	DEL	T	TCGA-05-4397-01A-01D-1265-08	7178710	90119264	90795996	629	26907											
RHOBTB3	22836	broad.mit.edu	37	chr5	95067575	95067575	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgtgcaggtccatccacatCgtggcgctggggaacgaggg	16	12	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95067575	T	T	95067575	2	4	10	1	0	0	0	0	0	0	0	1	13444	874	31	4		4	RHOBTB3	5	95067575	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	4948311	95067575	85847685	630	26908											
GIN1	54826	broad.mit.edu	37	chr5	102432295	102432295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggtgggacattttgataGgtcttttcagtctaacccca	9	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102432295	A	A	102432295	3	1	10	1	0	0	0	0	1	0	0	0	6450	1000	35	4	332	4	GIN1	5	102432295	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	7364720	102432295	78482965	631	26909											
FER	2241	broad.mit.edu	37	chr5	108386930	108386930	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataccacctccaccggatcAaaattaacacctggtgcact	5	14	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108386930	G	G	108386930	1	3	10	0	1	0	0	0	0	0	0	0	5870	145	5	5		5	FER	5	108386930	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	5954635	108386930	72528330	632	26910											
FER	2241	broad.mit.edu	37	chr5	108388111	108388111	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccctccagcagttaagtaGgcttgaaccttgtcaaggag	10	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108388111	C	C	108388111	1	2	10	0	1	0	0	0	0	0	0	0	5870	1015	35	4		4	FER	5	108388111	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1181	108388111	72527149	633	26911											
SLC25A46	91137	broad.mit.edu	37	chr5	110083920	110083920	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttattgtccagggagtcacActtggagcagaaggcataat	11	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110083920	C	C	110083920	2	2	10	1	0	0	0	0	0	0	0	1	14625	146	6	5		5	SLC25A46	5	110083920	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	1695809	110083920	70831340	634	26912											
APC	324	broad.mit.edu	37	chr5	112175225	112175225	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaaataaaagaaaagattGgaactaggtcagctgaagat	10	4	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112175225	C	C	112175225	3	2	10	1	0	0	0	0	1	0	0	0	765	1349	47	4	3992	4	APC	5	112175225	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2091305	112175225	68740035	635	26913											
MCC	4163	broad.mit.edu	37	chr5	112403916	112403916	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggcctcagcccttgcagAgaacagcggacaccttcaat	11	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112403916	G	G	112403916	1	3	10	0	1	0	0	0	0	0	0	0	9466	319	11	5		5	MCC	5	112403916	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	228691	112403916	68511344	636	26914											
AP3S1	1176	broad.mit.edu	37	chr5	115202294	115202294	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agacagatattgctacctttGattttaaaaattcttaaaat	4	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115202294	C	C	115202294	1	2	10	0	1	0	0	0	0	0	0	0	751	1305	45	4		4	AP3S1	5	115202294	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2798378	115202294	65712966	637	26915											
AQPEP	206338	broad.mit.edu	37	chr5	115361834	115361834	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttgtggctatctttcagCactcctcttgcatattataa	6	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115361834	T	T	115361834	1	4	10	0	1	0	0	0	0	0	0	0	836	725	25	4		4	AQPEP	5	115361834	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	159540	115361834	65553426	638	26916											
CEP120	153241	broad.mit.edu	37	chr5	122717941	122717941	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaaaaaccccaaatatgtCaaataaatgaatcagttgtc	4	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122717941	G	G	122717941	1	3	10	0	1	0	0	0	0	0	0	0	3276	841	29	4		4	CEP120	5	122717941	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	7356107	122717941	58197319	639	26917											
MEGF10	84466	broad.mit.edu	37	chr5	126783278	126783278	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacagcaatggtggaaacGctaatagccactacttcacc	7	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126783278	A	A	126783278	3	1	10	1	0	0	0	0	1	0	0	0	9553	1087	38	4	2836	4	MEGF10	5	126783278	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4065337	126783278	54131982	640	26918											
FBN2	2201	broad.mit.edu	37	chr5	127626463	127626463	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctcacaggggtccccccAgccctctcctggcatcttac	8	19	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127626463	T	T	127626463	3	4	10	1	0	0	0	0	1	0	0	0	5760	188	7	5	2396	5	FBN2	5	127626463	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	843185	127626463	53288797	641	26919											
FBN2	2201	broad.mit.edu	37	chr5	127627125	127627125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtattttagcatagacatGtattttgttaggactaatac	7	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127627125	T	T	127627125	1	4	10	0	1	0	0	0	0	0	0	0	5760	1392	48	3		3	FBN2	5	127627125	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	662	127627125	53288135	642	26920											
ADAMTS19	171019	broad.mit.edu	37	chr5	129030332	129030332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttaaataaaaaataagCataataagcttatgaacacc	3	5	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129030332	A	A	129030332	1	1	10	0	1	0	0	0	0	0	0	0	264	725	25	3		3	ADAMTS19	5	129030332	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1403207	129030332	51884928	643	26921											
TIFAB	497189	broad.mit.edu	37	chr5	134785271	134785271	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacaaaagcctccagggatGtgccttcttctacgcgaacc	9	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134785271	A	A	134785271	3	1	10	1	0	0	0	0	1	0	0	0	16018	1377	48	4	130	4	TIFAB	5	134785271	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5754939	134785271	46129989	644	26922											
KIF20A	10112	broad.mit.edu	37	chr5	137519015	137519015	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcaagaggcagactttgcgGctatgcgaggatcaaaatgg	14	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137519015	C	C	137519015	2	2	10	1	0	0	0	0	0	0	0	1	8356	1190	42	4		4	KIF20A	5	137519015	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	2733744	137519015	43396245	645	26923											
CTNNA1	1495	broad.mit.edu	37	chr5	138253693	138253693	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcttggcaggtaaattattCtaacaataatattgtgctgg	9	5	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138253693	A	A	138253693	1	1	10	0	1	0	0	0	0	0	0	0	4046	928	32	3		3	CTNNA1	5	138253693	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	734678	138253693	42661567	646	26924											
HARS2	23438	broad.mit.edu	37	chr5	140076603	140076603	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaggccctggagggcctggGagacctaaagctgctatttg	15	10	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140076603	A	A	140076603	3	1	10	1	0	0	0	0	1	0	0	0	7026	1174	41	4	936	4	HARS2	5	140076603	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1822910	140076603	40838657	647	26925											
PCDHA3	56145	broad.mit.edu	37	chr5	140182821	140182821	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaggcacccaaggcctcgtCccaggcgtccgctggcgcca	12	19	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140182821	G	G	140182821	3	3	10	1	0	0	0	0	1	0	0	0	11619	855	30	4	2041	4	PCDHA3	5	140182821	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	106218	140182821	40732439	648	26926											
PCDHA9	9752	broad.mit.edu	37	chr5	140229828	140229828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgagcgagatggtgctgcGgtcggtgggcgccggcgtag	21	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140229828	T	T	140229828	3	4	10	1	0	0	0	0	1	0	0	0	11625	1116	39	1	1750	1	PCDHA9	5	140229828	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	47007	140229828	40685432	649	26927											
PCDHB6	56130	broad.mit.edu	37	chr5	140531911	140531911	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accgtctacctggtggtggcGttggcctcggtgtcgtcgct	15	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140531911	C	C	140531911	2	2	10	1	0	0	0	0	0	0	0	1	11640	1132	40	4		4	PCDHB6	5	140531911	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	302083	140531911	40383349	650	26928											
PCDHB14	56122	broad.mit.edu	37	chr5	140605336	140605336	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagctaccaatacgaggtGtgtctgacaggaggttccgg	14	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605336	T	T	140605336	2	4	10	1	0	0	0	0	0	0	0	1	11633	1364	48	3		3	PCDHB14	5	140605336	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	73425	140605336	40309924	651	26929											
PCDHB15	56121	broad.mit.edu	37	chr5	140627001	140627002	+	Frame_Shift_Del	DEL	GC	-	-													ccgggctgttcggcgtgtggGcgcacaatggcgaggtgcgc					rs17844634		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140627002	-	-	140627001	7	5	10	1	0	1	0	1	0	0	0	0	11634	1203	42	0	1857	0	PCDHB15	5	140627001	Frame_Shift_Del	DEL	GC	TCGA-05-4397-01A-01D-1265-08	21665	140627001	40288259	652	26930											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719051	140719051	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacgcccttcagaagtacgcActcaacccaaatgaccactt	5	15	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140719051	T	T	140719051	2	4	10	1	0	0	0	0	0	0	0	1	11648	146	6	5		5	PCDHGA2	5	140719051	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	92050	140719051	40196209	653	26931											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719959	140719959	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagcctctgtcttctcagTgacggcccatgaccccgaca	10	15	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140719959	C	C	140719959	3	2	10	1	0	0	0	0	1	0	0	0	11648	1696	59	5	1423	5	PCDHGA2	5	140719959	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	908	140719959	40195301	654	26932											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720708	140720708	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctggcacaagtcacgcCtgctgcaggcttcaggaggc	15	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140720708	G	G	140720708	3	3	10	1	0	0	0	0	1	0	0	0	11648	680	24	4	2172	4	PCDHGA2	5	140720708	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	749	140720708	40194552	655	26933											
PCDHGA3	56112	broad.mit.edu	37	chr5	140723873	140723873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccgcggagaggatagaCcgggaggagctctgcgctca	16	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140723873	A	A	140723873	3	1	10	1	0	0	0	0	1	0	0	0	11649	506	18	3	275	3	PCDHGA3	5	140723873	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3165	140723873	40191387	656	26934											
PCDHGB3	56102	broad.mit.edu	37	chr5	140750326	140750326	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttttttcatgtaactgtgcTgatccaggatattaacgaca	7	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140750326	A	A	140750326	3	1	10	1	0	0	0	0	1	0	0	0	11658	1580	55	5	367	5	PCDHGB3	5	140750326	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	26453	140750326	40164934	657	26935											
PCDHGA10	56106	broad.mit.edu	37	chr5	140794977	140794977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccggctcgcactttgtGggcgtggacggggttcgggc	19	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140794977	T	T	140794977	2	4	10	1	0	0	0	0	0	0	0	1	11645	1335	47	2		2	PCDHGA10	5	140794977	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	44651	140794977	40120283	658	26936											
KIAA0141	9812	broad.mit.edu	37	chr5	141303535	141303535	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcccgggactcctgggccGaggtaagggacgtccaagca	14	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141303535	A	A	141303535	3	1	10	1	0	0	0	0	1	0	0	0	8226	1058	37	4	31	4	KIAA0141	5	141303535	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	508558	141303535	39611725	659	26937											
NR3C1	2908	broad.mit.edu	37	chr5	142780341	142780341	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccatcacatctcccctctCctgagcaagcacactgctgg	7	17	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142780341	A	A	142780341	4	1	10	1	0	0	0	0	0	1	0	0	10725	864	30	3	2356	3	NR3C1	5	142780341	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1476806	142780341	38134919	660	26938											
YIPF5	81555	broad.mit.edu	37	chr5	143543672	143543672	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggttgaaatgaaaatctTaccagtagcaatgtggctcc	10	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143543672	C	C	143543672	1	2	10	0	1	0	0	0	0	0	0	0	17608	1769	61	5		5	YIPF5	5	143543672	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	763331	143543672	37371588	661	26939											
PRELID2	153768	broad.mit.edu	37	chr5	145202688	145202688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgacatttttatccatggGgttggggtactaaacaaaaa	10	5	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145202688	T	T	145202688	3	4	10	1	0	0	0	0	1	0	0	0	12578	1232	43	2	508	2	PRELID2	5	145202688	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1659016	145202688	35712572	662	26940											
ARHGEF37	389337	broad.mit.edu	37	chr5	148988986	148988986	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggtcatttgcccatggtGacatgctggtaaacccagca	11	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148988986	A	A	148988986	1	1	10	0	1	0	0	0	0	0	0	0	908	1305	45	4		4	ARHGEF37	5	148988986	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3786298	148988986	31926274	663	26941											
PDGFRB	5159	broad.mit.edu	37	chr5	149510264	149510264	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagttaggaggcgggagggtCaggacagttaacaggacagg	19	5	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149510264	T	T	149510264	1	4	10	0	1	0	0	0	0	0	0	0	11756	841	29	4		4	PDGFRB	5	149510264	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	521278	149510264	31404996	664	26942											
PDGFRB	5159	broad.mit.edu	37	chr5	149515439	149515439	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagagacagcaacagcagctCgcctttgggagaggaggtat	15	8	0	2	rs148853962	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149515439	A	A	149515439	4	1	10	1	0	0	0	0	0	1	0	0	11756	893	31	3	3361	3	PDGFRB	5	149515439	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5175	149515439	31399821	665	26943											
CAMK2A	815	broad.mit.edu	37	chr5	149631370	149631370	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtcctcatcccagaaCggggggtacccaaccagcag	12	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149631370	A	A	149631370	2	1	10	1	0	0	0	0	0	0	0	1	2625	523	19	3		3	CAMK2A	5	149631370	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	115931	149631370	31283890	666	26944											
SLC36A2	153201	broad.mit.edu	37	chr5	150715005	150715005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccagcagcaccaggaagGgcaggaaggagagcatgtag	17	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150715005	T	T	150715005	3	4	10	1	0	0	0	0	1	0	0	0	14708	1232	43	2	842	2	SLC36A2	5	150715005	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1083635	150715005	30200255	667	26945											
SPARC	6678	broad.mit.edu	37	chr5	151043710	151043710	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacttgtcattgtccaggTcacaggtctcgaaaaagcgg	11	9	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151043710	G	G	151043710	3	3	10	1	0	0	0	0	1	0	0	0	15111	1667	58	5	98	5	SPARC	5	151043710	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	328705	151043710	29871550	668	26946											
GEMIN5	25929	broad.mit.edu	37	chr5	154304276	154304276	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacaaagtcggccgggcGcagtggctcacgcctgtaat	12	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154304276	A	A	154304276	1	1	10	0	1	0	0	0	0	0	0	0	6395	1102	38	4		4	GEMIN5	5	154304276	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3260566	154304276	26610984	669	26947											
KIF4B	285643	broad.mit.edu	37	chr5	154395249	154395250	+	Missense_Mutation	DNP	TG	CT	CT													gagctggagggtcaaatagcTgatctgaagaagaaactgaa							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	154395250	CT	CT	154395249	3	2	10	1	0	0	0	0	1	0	0	0	8374	1567	55	5	1832	5	KIF4B	5	154395249	Missense_Mutation	DNP	TG	TCGA-05-4397-01A-01D-1265-08	90973	154395249	26520011	670	26948											
HAVCR1	26762	broad.mit.edu	37	chr5	156476144	156476144	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggctgaggtgaagatGgtgaagtggctactggaatg	17	5	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156476144	A	A	156476144	3	1	10	1	0	0	0	0	1	0	0	0	7039	1348	47	4	428	4	HAVCR1	5	156476144	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2080895	156476144	24439116	671	26949											
ITK	3702	broad.mit.edu	37	chr5	156679624	156679624	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccctctccagagaccagAagatcggccagccttctcca	7	16	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156679624	G	G	156679624	3	3	10	1	0	0	0	0	1	0	0	0	7979	246	9	5	1865	5	ITK	5	156679624	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	203480	156679624	24235636	672	26950											
ATP10B	23120	broad.mit.edu	37	chr5	160031019	160031019	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattccaatatcagcagcttGaatcatgcttacatcatttg	5	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160031019	T	T	160031019	3	4	10	1	0	0	0	0	1	0	0	0	1121	1299	45	3	1223	3	ATP10B	5	160031019	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3351395	160031019	20884241	673	26951											
ATP10B	23120	broad.mit.edu	37	chr5	160097559	160097559	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatggcatatcccattggGgtcagaggaaaaaaggagga	14	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160097559	A	A	160097559	3	1	10	1	0	0	0	0	1	0	0	0	1121	1232	43	4	3879	4	ATP10B	5	160097559	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	66540	160097559	20817701	674	26952											
GABRG2	2566	broad.mit.edu	37	chr5	161520721	161520721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcaagggagaattttcaGtttaaacatttcttttatcc	5	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161520721	T	T	161520721	1	4	10	0	1	0	0	0	0	0	0	0	6232	1044	36	3		3	GABRG2	5	161520721	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1423162	161520721	19394539	675	26953											
ODZ2	57451	broad.mit.edu	37	chr5	167553854	167553854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagcgtgtgaccagcgcGtgtgccacccccgctgcatt	13	16	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167553854	T	T	167553854	3	4	10	1	0	0	0	0	1	0	0	0	10930	1145	40	3	2351	3	ODZ2	5	167553854	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	6033133	167553854	13361406	676	26954											
RARS	5917	broad.mit.edu	37	chr5	167943903	167943903	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcctttgacaaaatgctaGatgacagaggaaatacagct	8	8	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167943903	A	A	167943903	3	1	10	1	0	0	0	0	1	0	0	0	13166	942	33	4	1623	4	RARS	5	167943903	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	390049	167943903	12971357	677	26955											
SLIT3	6586	broad.mit.edu	37	chr5	168187941	168187941	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcattgtcattcagtcgCctgtgtaggaagcaagatga	10	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168187941	T	T	168187941	2	4	10	1	0	0	0	0	0	0	0	1	14855	753	26	4		4	SLIT3	5	168187941	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	244038	168187941	12727319	678	26956											
SLIT3	6586	broad.mit.edu	37	chr5	168310299	168310299	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcggtgatgccgcggaaCgccttcctcgggatcccctg	12	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168310299	T	T	168310299	2	4	10	1	0	0	0	0	0	0	0	1	14855	523	19	4		4	SLIT3	5	168310299	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	122358	168310299	12604961	679	26957											
CCDC99	54908	broad.mit.edu	37	chr5	169018232	169018232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaactaaaaactaaggttGggatatctgcgtatttcagc	9	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169018232	T	T	169018232	1	4	10	0	1	0	0	0	0	0	0	0	2904	1363	47	2		2	CCDC99	5	169018232	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	707933	169018232	11897028	680	26958											
DOCK2	1794	broad.mit.edu	37	chr5	169508774	169508774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcccccagccctccccCtgtctacctcccccaaggca	5	23	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169508774	A	A	169508774	1	1	10	0	1	0	0	0	0	0	0	0	4727	696	24	2		2	DOCK2	5	169508774	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	490542	169508774	11406486	681	26959											
NKX2-5	1482	broad.mit.edu	37	chr5	172661677	172661677	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggcccaagggcgcgtgtctCctcctcctggccctgagttt	12	16	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172661677	T	T	172661677	1	4	10	0	1	0	0	0	0	0	0	0	10548	870	30	4		4	NKX2-5	5	172661677	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3152903	172661677	8253583	682	26960											
LMAN2	10960	broad.mit.edu	37	chr5	176765534	176765534	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaaggcgatgccgtctcCatggaggttcttcttccctg	10	14	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176765534	A	A	176765534	4	1	10	1	0	0	0	0	0	1	0	0	8912	603	21	2	706	2	LMAN2	5	176765534	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	4103857	176765534	4149726	683	26961											
F12	2161	broad.mit.edu	37	chr5	176831231	176831231	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gactgaggcggggtccgggtCgtgggctgaggcttcggcgg	22	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176831231	T	T	176831231	2	4	10	1	0	0	0	0	0	0	0	1	5382	871	31	4		4	F12	5	176831231	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	65697	176831231	4084029	684	26962											
FAM153C	653316	broad.mit.edu	37	chr5	177474230	177474230	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagccctccacaggctgcttAgtgagggagacactgaggtg	15	10	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177474230	T	T	177474230	1	4	10	0	1	0	0	0	0	0	0	0	5508	435	15	5		5	FAM153C	5	177474230	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	642999	177474230	3441030	685	26963											
RMND5B	64777	broad.mit.edu	37	chr5	177570878	177570878	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcttttggggccctcctctCaggtgctggctctcaggtcc	13	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177570878	G	G	177570878	1	3	10	0	1	0	0	0	0	0	0	0	13509	841	29	4		4	RMND5B	5	177570878	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	96648	177570878	3344382	686	26964											
NHP2	55651	broad.mit.edu	37	chr5	177576618	177576618	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgccttggggaactgggaaGatgccgtcagtgtgggtggg	20	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177576618	C	C	177576618	1	2	10	0	1	0	0	0	0	0	0	0	10504	957	33	4		4	NHP2	5	177576618	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	5740	177576618	3338642	687	26965											
ADAMTS2	9509	broad.mit.edu	37	chr5	178552120	178552120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgcagcgcacggagcGcacctgcatgcctgtccgcc	12	16	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178552120	T	T	178552120	3	4	10	1	0	0	0	0	1	0	0	0	265	1087	38	3	839	3	ADAMTS2	5	178552120	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	975502	178552120	2363140	688	26966											
FLT4	2324	broad.mit.edu	37	chr5	180046569	180046569	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggatgagactggcttccagCctcagtctcccttcccgagt	10	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180046569	A	A	180046569	1	1	10	0	1	0	0	0	0	0	0	0	6002	754	26	3		3	FLT4	5	180046569	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1494449	180046569	868691	689	26967											
FLT4	2324	broad.mit.edu	37	chr5	180048182	180048182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccggccaccaagcactgCatctccagcgagtcgctcac	9	18	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180048182	A	A	180048182	3	1	10	1	0	0	0	0	1	0	0	0	6002	710	25	3	2076	3	FLT4	5	180048182	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1613	180048182	867078	690	26968											
CDYL	9425	broad.mit.edu	37	chr6	4892563	4892563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactagtgcctcaggtgcCcggccctgtgactgcagcca	11	17	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4892563	T	T	4892563	3	4	10	1	0	0	0	0	1	0	0	0	3215	623	22	4	647	4	CDYL	6	4892563	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08		4892563	166222504	691	26969											
TFAP2A	7020	broad.mit.edu	37	chr6	10419782	10419782	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaggcaaatcctccttttTtacctgctcaccaacatctc	3	15	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10419782	A	A	10419782	1	1	10	0	1	0	0	0	0	0	0	0	15910	1856	64	5		5	TFAP2A	6	10419782	5'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	5527219	10419782	160695285	692	26970											
C6orf114	85411	broad.mit.edu	37	chr6	13470560	13470560	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcattcaggcaagaatgtgCagctaaatctcagttccaca	8	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13470560	A	A	13470560	1	1	10	0	1	0	0	0	0	0	0	0	2344	725	25	3		3	C6orf114	6	13470560	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	3050778	13470560	157644507	693	26971											
CAP2	10486	broad.mit.edu	37	chr6	17426755	17426755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattacaggtgtgagccacCgtgcccggctagtcccaggt	14	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17426755	A	A	17426755	1	1	10	0	1	0	0	0	0	0	0	0	2646	667	23	1		1	CAP2	6	17426755	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3956195	17426755	153688312	694	26972											
KIF13A	63971	broad.mit.edu	37	chr6	17987600	17987600	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctaaagttgcccccgccctCagcccgagcagaaataaaaa	7	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17987600	T	T	17987600	1	4	10	0	1	0	0	0	0	0	0	0	8344	841	29	4		4	KIF13A	6	17987600	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	560845	17987600	153127467	695	26973											
FAM65B	9750	broad.mit.edu	37	chr6	24849846	24849846	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacgcgtgcaccttacccgGggagtttgttaaacagattc	10	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24849846	A	A	24849846	1	1	10	0	1	0	0	0	0	0	0	0	5651	1247	43	4		4	FAM65B	6	24849846	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6862246	24849846	146265221	696	26974											
SLC17A3	10786	broad.mit.edu	37	chr6	25845842	25845843	+	Intron	DNP	CC	AA	AA													caacattcactggtgggtttCcttgtagaaattcatttcct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	25845843	AA	AA	25845842	1	1	10	0	1	0	0	0	0	0	0	0	14531	870	30	3		3	SLC17A3	6	25845842	Intron	DNP	CC	TCGA-05-4397-01A-01D-1265-08	995996	25845842	145269225	697	26975											
HIST1H4H	8365	broad.mit.edu	37	chr6	26285712	26285712	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccaaaccttttccaccttTaccacggccagacatgacta	4	16	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26285712	C	C	26285712	3	2	10	1	0	0	0	0	1	0	0	0	7239	1763	61	5	299	5	HIST1H4H	6	26285712	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	439870	26285712	144829355	698	26976											
BTN3A1	11119	broad.mit.edu	37	chr6	26411376	26411376	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctataatggtgagtgaacctGatgctctctgagtttgctgg	12	7	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26411376	C	C	26411376	1	2	10	0	1	0	0	0	0	0	0	0	1572	1305	45	4		4	BTN3A1	6	26411376	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	125664	26411376	144703691	699	26977											
ABT1	29777	broad.mit.edu	37	chr6	26598745	26598745	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcagcacggccagggggaCgtgaacgggctcgcctggca	17	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26598745	T	T	26598745	3	4	10	1	0	0	0	0	1	0	0	0	101	536	19	4	701	4	ABT1	6	26598745	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	187369	26598745	144516322	700	26978											
PGBD1	84547	broad.mit.edu	37	chr6	28252037	28252037	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaaaagggggacatgtAtcggtttatttttaacgttt	11	3	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28252037	G	G	28252037	1	3	10	0	1	0	0	0	0	0	0	0	11875	464	16	5		5	PGBD1	6	28252037	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1653292	28252037	142863030	701	26979											
SCAND3	114821	broad.mit.edu	37	chr6	28543098	28543098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaggtctgagacttccCatggacaattttcaattctg	9	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28543098	A	A	28543098	3	1	10	1	0	0	0	0	1	0	0	0	13988	594	21	2	2601	2	SCAND3	6	28543098	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	291061	28543098	142571969	702	26980											
ZNF311	282890	broad.mit.edu	37	chr6	28964486	28964486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaattactaacgttgtgGccaaaagtcagaacaggctg	10	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28964486	T	T	28964486	1	4	10	0	1	0	0	0	0	0	0	0	17960	1218	42	3		3	ZNF311	6	28964486	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	421388	28964486	142150581	703	26981											
ZNF311	282890	broad.mit.edu	37	chr6	28971411	28971411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattcaggaaagttatgaaGgtgagaaaaatacataggaa	11	2	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28971411	T	T	28971411	1	4	10	0	1	0	0	0	0	0	0	0	17960	1015	35	2		2	ZNF311	6	28971411	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6925	28971411	142143656	704	26982											
GABBR1	2550	broad.mit.edu	37	chr6	29588791	29588791	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttatatccaaattccgcacCctctccctgccaccctttcc	2	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29588791	G	G	29588791	1	3	10	0	1	0	0	0	0	0	0	0	6215	638	22	4		4	GABBR1	6	29588791	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	617380	29588791	141526276	705	26983											
TRIM40	135644	broad.mit.edu	37	chr6	30113897	30113898	+	Intron	DNP	CC	AA	AA													cgggttcctgggaaggactcCctggagtgttctcaggagcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	30113898	AA	AA	30113897	1	1	10	0	1	0	0	0	0	0	0	0	16639	638	22	2		2	TRIM40	6	30113897	Intron	DNP	CC	TCGA-05-4397-01A-01D-1265-08	525106	30113897	141001170	706	26984											
BAT2	7916	broad.mit.edu	37	chr6	31592974	31592974	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcatcaagcctactgtcaCgattctctcgagaggaattt	10	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31592974	A	A	31592974	2	1	10	1	0	0	0	0	0	0	0	1	1324	528	19	3		3	BAT2	6	31592974	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1479077	31592974	139522093	707	26985											
BAT4	7918	broad.mit.edu	37	chr6	31631770	31631770	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggcagccccacggcccagGagatagctcacagctgcccc	11	18	1	1	rs142946824	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31631770	A	A	31631770	2	1	10	1	0	0	0	0	0	0	0	1	1328	1161	41	4		4	BAT4	6	31631770	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	38796	31631770	139483297	708	26986											
C6orf27	80737	broad.mit.edu	37	chr6	31742461	31742461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccccagcctttatcccCacccacccaaaccttttcag	2	22	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31742461	A	A	31742461	1	1	10	0	1	0	0	0	0	0	0	0	2385	609	21	2		2	C6orf27	6	31742461	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	110691	31742461	139372606	709	26987											
TNXB	7148	broad.mit.edu	37	chr6	32029430	32029430	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttagctcccccaggagCggctcctcagggggctccgg	14	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32029430	A	A	32029430	2	1	10	1	0	0	0	0	0	0	0	1	16469	755	27	3		3	TNXB	6	32029430	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	286969	32029430	139085637	710	26988											
TNXB	7148	broad.mit.edu	37	chr6	32040127	32040127	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatctctgaggggagaaccCctgggctttgagggcctcag	15	10	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32040127	G	G	32040127	1	3	10	0	1	0	0	0	0	0	0	0	16469	638	22	4		4	TNXB	6	32040127	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	10697	32040127	139074940	711	26989											
C6orf10	10665	broad.mit.edu	37	chr6	32317651	32317651	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaggatagaaatgagtcaCaacttatttcctggtatcaa	8	6	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32317651	G	G	32317651	1	3	10	0	1	0	0	0	0	0	0	0	2340	493	17	4		4	C6orf10	6	32317651	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	277524	32317651	138797416	712	26990											
B3GALT4	8705	broad.mit.edu	37	chr6	33244282	33244282	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaataaatagtttatatacCtatggcttcctgtcctttct	4	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33244282	T	T	33244282	1	4	10	0	1	0	0	0	0	0	0	0	1254	696	24	4		4	B3GALT4	6	33244282	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	926631	33244282	137870785	713	26991											
ZBTB22	9278	broad.mit.edu	37	chr6	33282996	33282996	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaccccgcccaggcggtgCcggcgctcacagtgtcctcg	13	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33282996	A	A	33282996	2	1	10	1	0	0	0	0	0	0	0	1	17656	726	26	3		3	ZBTB22	6	33282996	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	38714	33282996	137832071	714	26992											
SCUBE3	222663	broad.mit.edu	37	chr6	35195260	35195260	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggtcactgcctctgtttTagagaagaggggattctgcc	15	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35195260	C	C	35195260	1	2	10	0	1	0	0	0	0	0	0	0	14059	1769	61	5		5	SCUBE3	6	35195260	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1912264	35195260	135919807	715	26993											
DNAH8	1769	broad.mit.edu	37	chr6	38863991	38863991	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgaagtacccaaaaTatatgaattggtatttattt	7	3	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38863991	C	C	38863991	3	2	10	1	0	0	0	0	1	0	0	0	4647	1406	49	5	8501	5	DNAH8	6	38863991	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	3668731	38863991	132251076	716	26994											
DNAH8	1769	broad.mit.edu	37	chr6	38885209	38885209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatctatcattgtcaatcCtatgagctgcatcaggcgtc	7	10	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38885209	A	A	38885209	1	1	10	0	1	0	0	0	0	0	0	0	4647	696	24	2		2	DNAH8	6	38885209	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	21218	38885209	132229858	717	26995											
GLP1R	2740	broad.mit.edu	37	chr6	39045953	39045953	+	Intron	DEL	A	-	-													ctgttctcccaggtgcccagAaaaaaactagaaaacatagt					rs74644392		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39045953	-	-	39045953	6	5	10	0	1	1	0	1	0	0	0	0	6516	261	9	0		0	GLP1R	6	39045953	Intron	DEL	A	TCGA-05-4397-01A-01D-1265-08	160744	39045953	132069114	718	26996											
C6orf64	55776	broad.mit.edu	37	chr6	39082790	39082790	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctggggtttgtgcgccctGactggcagcagggggttggg	19	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39082790	A	A	39082790	4	1	10	1	0	0	0	0	0	1	0	0	2393	1299	45	4	483	4	C6orf64	6	39082790	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	36837	39082790	132032277	719	26997											
CCND3	896	broad.mit.edu	37	chr6	41908796	41908796	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccttccccgccagaacccCgcgaaagacacaggaaccgg	10	18	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41908796	A	A	41908796	1	1	10	0	1	0	0	0	0	0	0	0	2948	667	23	1		1	CCND3	6	41908796	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2826006	41908796	129206271	720	26998											
TRERF1	55809	broad.mit.edu	37	chr6	42397215	42397215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcactttctccggggCcttagctctgtcagattttg	8	13	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42397215	A	A	42397215	1	1	10	0	1	0	0	0	0	0	0	0	16599	754	26	3		3	TRERF1	6	42397215	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	488419	42397215	128717852	721	26999											
SLC29A1	2030	broad.mit.edu	37	chr6	44200166	44200166	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacagctgtattcatgtggGtaagtggaggaagagggccc	15	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44200166	A	A	44200166	5	1	10	1	0	0	0	0	0	0	1	0	14648	1275	44	4	1098	4	SLC29A1	6	44200166	Splice_Site	SNP	G	TCGA-05-4397-01A-01D-1265-08	1802951	44200166	126914901	722	27000											
AARS2	57505	broad.mit.edu	37	chr6	44273574	44273574	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggggagggattagacaaaGaaggggagaaaaataaggtc	17	2	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44273574	C	C	44273574	1	2	10	0	1	0	0	0	0	0	0	0	20	957	33	4		4	AARS2	6	44273574	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	73408	44273574	126841493	723	27001											
SUPT3H	8464	broad.mit.edu	37	chr6	44900535	44900535	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacataaattgttactaaatCaaaaacacgcaacagaacta	3	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44900535	T	T	44900535	1	4	10	0	1	0	0	0	0	0	0	0	15515	841	29	4		4	SUPT3H	6	44900535	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	626961	44900535	126214532	724	27002											
ENPP4	22875	broad.mit.edu	37	chr6	46107260	46107260	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatgaaatagaattactActtatgagttgtgtttttac	6	5	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46107260	T	T	46107260	1	4	10	0	1	0	0	0	0	0	0	0	5174	406	14	5		5	ENPP4	6	46107260	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1206725	46107260	125007807	725	27003											
MEP1A	4224	broad.mit.edu	37	chr6	46806815	46806815	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatcggaggcacggctgGcgtgatcttcttgaccttct	14	10	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46806815	C	C	46806815	3	2	10	1	0	0	0	0	1	0	0	0	9568	1203	42	4	2237	4	MEP1A	6	46806815	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	699555	46806815	124308252	726	27004											
GPR116	221395	broad.mit.edu	37	chr6	46849943	46849943	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacatattcctaatcacaCtaggtaaaattatcttctgt	3	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46849943	G	G	46849943	1	3	10	0	1	0	0	0	0	0	0	0	6698	580	20	4		4	GPR116	6	46849943	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	43128	46849943	124265124	727	27005											
C6orf138	442213	broad.mit.edu	37	chr6	47846756	47846756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtcctggccaccagataCaagcgagaagcaatgatatt	9	10	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47846756	A	A	47846756	3	1	10	1	0	0	0	0	1	0	0	0	2355	477	17	3	720	3	C6orf138	6	47846756	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	996813	47846756	123268311	728	27006											
C6orf138	442213	broad.mit.edu	37	chr6	48035776	48035776	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttaattggcagaagcaTgcagaaggagcataccttta	9	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48035776	G	G	48035776	1	3	10	0	1	0	0	0	0	0	0	0	2355	1479	51	5		5	C6orf138	6	48035776	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	189020	48035776	123079291	729	27007											
MUT	4594	broad.mit.edu	37	chr6	49425827	49425827	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctggaatcaaggtaaaaTgatttacttttaacactact	6	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49425827	C	C	49425827	1	2	10	0	1	0	0	0	0	0	0	0	10085	1479	51	5		5	MUT	6	49425827	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1390051	49425827	121689240	730	27008											
CRISP3	10321	broad.mit.edu	37	chr6	49704088	49704088	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcacacccctctcctttgCaatatcacctcttaccatct	2	17	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49704088	T	T	49704088	1	4	10	0	1	0	0	0	0	0	0	0	3913	725	25	4		4	CRISP3	6	49704088	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	278261	49704088	121410979	731	27009											
PKHD1	5314	broad.mit.edu	37	chr6	51524215	51524215	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagcctttttctaagactGaaaccatcacagtgagggcc	8	13	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51524215	A	A	51524215	3	1	10	1	0	0	0	0	1	0	0	0	12066	1294	45	4	1543	4	PKHD1	6	51524215	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1820127	51524215	119590852	732	27010											
PKHD1	5314	broad.mit.edu	37	chr6	51915255	51915255	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacacatggagaggacgcagGaggataagccattcagttta	12	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51915255	C	C	51915255	1	2	10	0	1	0	0	0	0	0	0	0	12066	1189	41	4		4	PKHD1	6	51915255	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	391040	51915255	119199812	733	27011											
IL17F	112744	broad.mit.edu	37	chr6	52111412	52111412	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctagacagcctcccatgtActctgggacctttgactctc	8	15	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52111412	G	G	52111412	1	3	10	0	1	0	0	0	0	0	0	0	7708	406	14	5		5	IL17F	6	52111412	5'Flank	SNP	A	TCGA-05-4397-01A-01D-1265-08	196157	52111412	119003655	734	27012											
TMEM14A	28978	broad.mit.edu	37	chr6	52546792	52546792	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accctatgctagatatactaGaacatatttagtcaaatggc	6	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52546792	A	A	52546792	1	1	10	0	1	0	0	0	0	0	0	0	16186	957	33	4		4	TMEM14A	6	52546792	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	435380	52546792	118568275	735	27013											
GSTA5	221357	broad.mit.edu	37	chr6	52696930	52696930	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagtgagaaatgaagataaGaggaataacatgtagctcac	10	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52696930	A	A	52696930	1	1	10	0	1	0	0	0	0	0	0	0	6900	957	33	4		4	GSTA5	6	52696930	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	150138	52696930	118418137	736	27014											
ICK	22858	broad.mit.edu	37	chr6	52871150	52871150	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataggtgctaggtgtaccctCtgcatagcagaaccgatttc	10	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52871150	T	T	52871150	2	4	10	1	0	0	0	0	0	0	0	1	7554	912	32	4		4	ICK	6	52871150	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	174220	52871150	118243917	737	27015											
DST	667	broad.mit.edu	37	chr6	56368958	56368958	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaaattgctacagtatttCaagtactacagaaaaataca	5	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56368958	A	A	56368958	1	1	10	0	1	0	0	0	0	0	0	0	4823	841	29	3		3	DST	6	56368958	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3497808	56368958	114746109	738	27016											
PRIM2	5558	broad.mit.edu	37	chr6	57372237	57372237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatttagtattcaaatatGttcggtgttcggcctttgct	8	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57372237	T	T	57372237	1	4	10	0	1	0	0	0	0	0	0	0	12597	1392	48	3		3	PRIM2	6	57372237	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1003279	57372237	113742830	739	27017											
PRIM2	5558	broad.mit.edu	37	chr6	57467044	57467044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactagtataattattggCtgactttgtctctttttcca	5	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57467044	A	A	57467044	1	1	10	0	1	0	0	0	0	0	0	0	12597	812	28	3		3	PRIM2	6	57467044	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	94807	57467044	113648023	740	27018											
PRIM2	5558	broad.mit.edu	37	chr6	57512650	57512650	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggcctctttaaattcctCtctggaaatggatatggaag	9	8	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512650	A	A	57512650	3	1	10	1	0	0	0	0	1	0	0	0	12597	913	32	3	1528	3	PRIM2	6	57512650	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	45606	57512650	113602417	741	27019											
LGSN	51557	broad.mit.edu	37	chr6	63990184	63990184	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtccatctaagccggcagcAacagttgcagccagcaccaa	9	14	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63990184	T	T	63990184	2	4	10	1	0	0	0	0	0	0	0	1	8831	117	5	5		5	LGSN	6	63990184	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	6477534	63990184	107124883	742	27020											
BAI3	577	broad.mit.edu	37	chr6	70040437	70040437	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggactactctatgctttTgtgggacctgcagccgctgt	13	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70040437	C	C	70040437	2	2	10	1	0	0	0	0	0	0	0	1	1305	1809	63	5		5	BAI3	6	70040437	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	6050253	70040437	101074630	743	27021											
COL19A1	1310	broad.mit.edu	37	chr6	70866197	70866197	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctcagttctgttcttcctCtgtcttctagggtgatatag	8	10	6	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70866197	G	G	70866197	1	3	10	0	1	0	0	0	0	0	0	0	3708	928	32	4		4	COL19A1	6	70866197	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	825760	70866197	100248870	744	27022											
COL9A1	1297	broad.mit.edu	37	chr6	70926640	70926640	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatgctcgctgaccagccTgcatggtgcaggaggctggc	14	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70926640	G	G	70926640	3	3	10	1	0	0	0	0	1	0	0	0	3739	1580	55	5	43	5	COL9A1	6	70926640	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	60443	70926640	100188427	745	27023											
KCNQ5	56479	broad.mit.edu	37	chr6	73900515	73900515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtagagtaaacctctgaActccatatttttcattcatt	4	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73900515	G	G	73900515	1	3	10	0	1	0	0	0	0	0	0	0	8156	58	2	5		5	KCNQ5	6	73900515	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2973875	73900515	97214552	746	27024											
COL12A1	1303	broad.mit.edu	37	chr6	75890645	75890645	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaataacagtggcagaaacCccatcacaccttcttcggtg	8	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75890645	T	T	75890645	1	4	10	0	1	0	0	0	0	0	0	0	3701	638	22	4		4	COL12A1	6	75890645	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1990130	75890645	95224422	747	27025											
MYO6	4646	broad.mit.edu	37	chr6	76602436	76602436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgggtggggtatagcGctctctcctttgctttctct	11	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76602436	T	T	76602436	1	4	10	0	1	0	0	0	0	0	0	0	10175	1102	38	3		3	MYO6	6	76602436	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	711791	76602436	94512631	748	27026											
TTK	7272	broad.mit.edu	37	chr6	80750061	80750061	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacagtctgttacctattAatataacaaagacagaatct	4	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80750061	C	C	80750061	1	2	10	0	1	0	0	0	0	0	0	0	16846	377	13	5		5	TTK	6	80750061	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	4147625	80750061	90365006	749	27027											
NT5E	4907	broad.mit.edu	37	chr6	86176908	86176908	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatctcaaatatcaggacTttatttgccatataaagttc	5	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86176908	C	C	86176908	3	2	10	1	0	0	0	0	1	0	0	0	10788	1609	56	5	476	5	NT5E	6	86176908	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	5426847	86176908	84938159	750	27028											
SNX14	57231	broad.mit.edu	37	chr6	86223826	86223826	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaccaaacggtgctccTgaaatagctgttctagttta	10	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86223826	A	A	86223826	3	1	10	1	0	0	0	0	1	0	0	0	14999	1580	55	5	341	5	SNX14	6	86223826	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	46918	86223826	84891241	751	27029											
HTR1E	3354	broad.mit.edu	37	chr6	87725435	87725435	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggccatcaccaatgctaTtgaatacgccaggaagagga	11	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87725435	C	C	87725435	3	2	10	1	0	0	0	0	1	0	0	0	7509	1493	52	5	385	5	HTR1E	6	87725435	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1501609	87725435	83389632	752	27030											
RNGTT	8732	broad.mit.edu	37	chr6	89324034	89324034	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaaacttttgtctgttctCtgtctcatgaagacccagct	8	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89324034	T	T	89324034	2	4	10	1	0	0	0	0	0	0	0	1	13614	912	32	4		4	RNGTT	6	89324034	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1598599	89324034	81791033	753	27031											
PNRC1	10957	broad.mit.edu	37	chr6	89790770	89790770	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacccccgggcactgcccCcgaccctcttcctccctcat	7	23	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89790770	T	T	89790770	3	4	10	1	0	0	0	0	1	0	0	0	12269	623	22	4	159	4	PNRC1	6	89790770	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	466736	89790770	81324297	754	27032											
PM20D2	135293	broad.mit.edu	37	chr6	89872060	89872060	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttaatgaaggcatgcttGttttttaatcttaaaggagt	8	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89872060	T	T	89872060	1	4	10	0	1	0	0	0	0	0	0	0	12224	1392	48	3		3	PM20D2	6	89872060	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	81290	89872060	81243007	755	27033											
GABRR1	2569	broad.mit.edu	37	chr6	89913039	89913039	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctctggtcccccaccCtccactttctgatccttggt	5	19	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89913039	T	T	89913039	1	4	10	0	1	0	0	0	0	0	0	0	6236	696	24	4		4	GABRR1	6	89913039	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	40979	89913039	81202028	756	27034											
MDN1	23195	broad.mit.edu	37	chr6	90459956	90459956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcaggcatcaagaaaagCcggctgttacagcaaaggtc	11	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90459956	A	A	90459956	1	1	10	0	1	0	0	0	0	0	0	0	9508	754	26	3		3	MDN1	6	90459956	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	546917	90459956	80655111	757	27035											
FUT9	10690	broad.mit.edu	37	chr6	96651667	96651667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatgagctaagcaaaagCattgaaatccatacctacgg	7	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96651667	A	A	96651667	3	1	10	1	0	0	0	0	1	0	0	0	6171	709	25	3	638	3	FUT9	6	96651667	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	6191711	96651667	74463400	758	27036											
BEND3	57673	broad.mit.edu	37	chr6	107391998	107391998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgatcttgtgcgagatgcCatacagaggcttcttgtagg	12	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107391998	A	A	107391998	3	1	10	1	0	0	0	0	1	0	0	0	1404	594	21	2	2093	2	BEND3	6	107391998	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	10740331	107391998	63723069	759	27037											
ROS1	6098	broad.mit.edu	37	chr6	117683690	117683690	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccatttacactgtaacatatCccagaaacatagtctttccc	3	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117683690	G	G	117683690	1	3	10	0	1	0	0	0	0	0	0	0	13642	870	30	4		4	ROS1	6	117683690	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	10291692	117683690	53431377	760	27038											
SLC35F1	222553	broad.mit.edu	37	chr6	118475757	118475757	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattcttctcttcttggtctAtaccaccacactagccgtca	4	15	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118475757	G	G	118475757	3	3	10	1	0	0	0	0	1	0	0	0	14702	449	16	5	329	5	SLC35F1	6	118475757	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	792067	118475757	52639310	761	27039											
SLC35F1	222553	broad.mit.edu	37	chr6	118598702	118598702	+	Nonsense_Mutation	SNP	G	A	A													ttgaaggtgccctgggactgGcaaataggtaaggagttggc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118598702	A	A	118598702	4	1	10	1	0	0	0	0	0	1	0	0	14702	1212	42	4	862	4	SLC35F1	6	118598702	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	122945	118598702	52516365	762	27040	173	2									
SLC35F1	222553	broad.mit.edu	37	chr6	118598709	118598709	+	Frame_Shift_Del	DEL	G	-	-													tgccctgggactggcaaataGgtaaggagttggctcacata							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118598709	-	-	118598709	7	5	10	1	0	1	0	1	0	0	0	0	14702	1014	35	0	869	0	SLC35F1	6	118598709	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	7	118598709	52516358	763	27041	173	2									
NKAIN2	154215	broad.mit.edu	37	chr6	125144577	125144577	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaccaattccacttgaccTcctctttctaactgaaacag	3	15	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125144577	C	C	125144577	1	2	10	0	1	0	0	0	0	0	0	0	10531	1566	54	5		5	NKAIN2	6	125144577	3'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	6545868	125144577	45970490	764	27042											
HEY2	23493	broad.mit.edu	37	chr6	126080174	126080174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagagtggaacatcagtGggtggttattgttgactata	14	4	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126080174	T	T	126080174	1	4	10	0	1	0	0	0	0	0	0	0	7146	1363	47	2		2	HEY2	6	126080174	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	935597	126080174	45034893	765	27043											
C6orf174	387104	broad.mit.edu	37	chr6	127765277	127765277	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccatcaatgcttcggatcGcagagaaatggtatagttgt	10	7	1	1	rs151145731	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127765277	C	C	127765277	1	2	10	0	1	0	0	0	0	0	0	0	2368	1095	38	4		4	C6orf174	6	127765277	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	1685103	127765277	43349790	766	27044											
PTPRK	5796	broad.mit.edu	37	chr6	128312508	128312508	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgccaaatcatcctccaGaaatcatacactgtttcatg	4	12	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128312508	C	C	128312508	3	2	10	1	0	0	0	0	1	0	0	0	12913	933	33	4	1456	4	PTPRK	6	128312508	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	547231	128312508	42802559	767	27045											
PTPRK	5796	broad.mit.edu	37	chr6	128411061	128411061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacgcgtaatgttgtaaccCaaggattcccagtccacagc	8	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128411061	A	A	128411061	3	1	10	1	0	0	0	0	1	0	0	0	12913	593	21	2	3197	2	PTPRK	6	128411061	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	98553	128411061	42704006	768	27046											
LAMA2	3908	broad.mit.edu	37	chr6	129637432	129637432	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggttttgcagtataatgaTagaagataaaccatggaggc	11	4	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129637432	C	C	129637432	1	2	10	0	1	0	0	0	0	0	0	0	8678	1421	49	5		5	LAMA2	6	129637432	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1226371	129637432	41477635	769	27047											
LAMA2	3908	broad.mit.edu	37	chr6	129663545	129663545	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgctcttggatactatGgaattgtcaagggattgcca	12	6	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129663545	A	A	129663545	3	1	10	1	0	0	0	0	1	0	0	0	8678	1349	47	4	4487	4	LAMA2	6	129663545	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	26113	129663545	41451522	770	27048											
ARHGAP18	93663	broad.mit.edu	37	chr6	129950633	129950633	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcgtctcctcaggtgggatCagcttctcttcaccaacaag	10	13	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129950633	A	A	129950633	2	1	10	1	0	0	0	0	0	0	0	1	870	813	29	3		3	ARHGAP18	6	129950633	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	287088	129950633	41164434	771	27049											
EPB41L2	2037	broad.mit.edu	37	chr6	131216074	131216074	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtcgtaaacaggccgacTaacaacaactgattagaaat	8	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131216074	G	G	131216074	1	3	10	0	1	0	0	0	0	0	0	0	5195	1537	53	5		5	EPB41L2	6	131216074	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1265441	131216074	39898993	772	27050											
ENPP1	5167	broad.mit.edu	37	chr6	132190717	132190717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggctcatgcctgtaatcGcagcactttgggaggccaaa	12	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132190717	T	T	132190717	1	4	10	0	1	0	0	0	0	0	0	0	5171	1102	38	3		3	ENPP1	6	132190717	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	974643	132190717	38924350	773	27051											
VNN2	8875	broad.mit.edu	37	chr6	133071118	133071118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattatctttctctgaaaaGggatttggatcatgtgtctt	8	6	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133071118	T	T	133071118	1	4	10	0	1	0	0	0	0	0	0	0	17310	1015	35	2		2	VNN2	6	133071118	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	880401	133071118	38043949	774	27052											
C6orf192	116843	broad.mit.edu	37	chr6	133092339	133092339	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacttcatgaaaagctacatGatccttcaattgtaagtctt	5	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133092339	A	A	133092339	1	1	10	0	1	0	0	0	0	0	0	0	2372	1305	45	4		4	C6orf192	6	133092339	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	21221	133092339	38022728	775	27053											
RPS12	6206	broad.mit.edu	37	chr6	133137759	133137759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgcttgtatatggggGtaaattctgtgaagtctcaa	12	4	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133137759	T	T	133137759	1	4	10	0	1	0	0	0	0	0	0	0	13733	1276	44	3		3	RPS12	6	133137759	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	45420	133137759	37977308	776	27054											
SGK1	6446	broad.mit.edu	37	chr6	134496001	134496001	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagaccggctcggcgtatgCtgcgccaggccgcgcgctcg	15	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134496001	G	G	134496001	1	3	10	0	1	0	0	0	0	0	0	0	14320	812	28	4		4	SGK1	6	134496001	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	1358242	134496001	36619066	777	27055											
MYB	4602	broad.mit.edu	37	chr6	135522779	135522779	+	Frame_Shift_Del	DEL	G	-	-													ctttctatatgcttttaggtGgaatctccaactgataaatc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135522779	-	-	135522779	7	5	10	1	0	1	0	1	0	0	0	0	10101	1335	47	0	2007	0	MYB	6	135522779	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	1026778	135522779	35592288	778	27056											
MAP7	9053	broad.mit.edu	37	chr6	136710462	136710462	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtctgaactagaggagcCactcatattcttcccggggg	11	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136710462	G	G	136710462	1	3	10	0	1	0	0	0	0	0	0	0	9358	609	21	4		4	MAP7	6	136710462	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1187683	136710462	34404605	779	27057											
LTV1	84946	broad.mit.edu	37	chr6	144178332	144178332	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttaatcgttcttttatcCtcaatatattaatagactct	2	8	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144178332	T	T	144178332	1	4	10	0	1	0	0	0	0	0	0	0	9168	696	24	4		4	LTV1	6	144178332	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	7467870	144178332	26936735	780	27058											
STX11	8676	broad.mit.edu	37	chr6	144508681	144508681	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccatggagcgcgctgggaAggacgcaccaaagccgggag	17	11	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144508681	C	C	144508681	1	2	10	0	1	0	0	0	0	0	0	0	15455	87	3	5		5	STX11	6	144508681	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	330349	144508681	26606386	781	27059											
SYNE1	23345	broad.mit.edu	37	chr6	152737697	152737697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggttctggatcctctctaCctctccacagagctgatcag	8	13	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152737697	A	A	152737697	3	1	10	1	0	0	0	0	1	0	0	0	15564	507	18	3	21015	3	SYNE1	6	152737697	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	8229016	152737697	18377370	782	27060											
NOX3	50508	broad.mit.edu	37	chr6	155718540	155718541	+	Intron	INS	-	T	T													aatgcctggacttgacctccINStttttggccaggtgaccttg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155718541	T	T	155718540	6	5	10	0	1	1	1	0	0	0	0	0	10652	696	24	0		0	NOX3	6	155718540	Intron	INS	-	TCGA-05-4397-01A-01D-1265-08	2980843	155718540	15396527	783	27061	174	2									
NOX3	50508	broad.mit.edu	37	chr6	155718546	155718546	+	Intron	SNP	G	T	T													ctggacttgacctcctttttGgccaggtgaccttgattcat							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155718546	T	T	155718546	1	4	10	0	1	0	0	0	0	0	0	0	10652	1363	47	2		2	NOX3	6	155718546	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6	155718546	15396521	784	27062	174	2									
NOX3	50508	broad.mit.edu	37	chr6	155728436	155728436	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catttagaaaaaaaaaataaGacttctataaataaagaata	3	3	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155728436	A	A	155728436	1	1	10	0	1	0	0	0	0	0	0	0	10652	957	33	4		4	NOX3	6	155728436	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	9890	155728436	15386631	785	27063											
SYNJ2	8871	broad.mit.edu	37	chr6	158495792	158495792	+	Intron	DEL	T	-	-													taagttgtgctttaaaaacaTtttttagcagctgctccaag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158495792	-	-	158495792	6	5	10	0	1	1	0	1	0	0	0	0	15572	1508	52	0		0	SYNJ2	6	158495792	Intron	DEL	T	TCGA-05-4397-01A-01D-1265-08	2767356	158495792	12619275	786	27064											
IGF2R	3482	broad.mit.edu	37	chr6	160454208	160454208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatagggttgcactctggcGcccaggctagactgcagtgg	15	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160454208	T	T	160454208	1	4	10	0	1	0	0	0	0	0	0	0	7646	1102	38	3		3	IGF2R	6	160454208	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1958416	160454208	10660859	787	27065											
SLC22A2	6582	broad.mit.edu	37	chr6	160679775	160679775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgctccaggacatcgtcCacggtggtgggcatgatcct	12	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160679775	A	A	160679775	2	1	10	1	0	0	0	0	0	0	0	1	14564	581	21	2		2	SLC22A2	6	160679775	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	225567	160679775	10435292	788	27066											
LPA	4018	broad.mit.edu	37	chr6	161027594	161027594	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgcgtctgagcattgtgtCaggttgcagtactcccacct	10	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161027594	T	T	161027594	2	4	10	1	0	0	0	0	0	0	0	1	8990	813	29	4		4	LPA	6	161027594	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	347819	161027594	10087473	789	27067											
LPA	4018	broad.mit.edu	37	chr6	161032537	161032537	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagcttgaagcatgtctctTgtcacagaaacttcagttgg	9	9	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161032537	A	A	161032537	1	1	10	0	1	0	0	0	0	0	0	0	8990	1827	63	5		5	LPA	6	161032537	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	4943	161032537	10082530	790	27068											
PARK2	5071	broad.mit.edu	37	chr6	162137128	162137128	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactcctctcctgaatccccCcagagctcctctaagcacca	5	19	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162137128	G	G	162137128	1	3	10	0	1	0	0	0	0	0	0	0	11543	638	22	4		4	PARK2	6	162137128	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1104591	162137128	8977939	791	27069											
PACRG	135138	broad.mit.edu	37	chr6	163736062	163736062	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacctcccgttggtgttggGatcatctgtctctgttgctt	10	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163736062	T	T	163736062	1	4	10	0	1	0	0	0	0	0	0	0	11464	1189	41	3		3	PACRG	6	163736062	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	1598934	163736062	7379005	792	27070											
QKI	9444	broad.mit.edu	37	chr6	163983080	163983080	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgattctgaatggcacctacAgagatgccaacattaaatca	7	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163983080	G	G	163983080	3	3	10	1	0	0	0	0	1	0	0	0	12981	180	7	5	631	5	QKI	6	163983080	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	247018	163983080	7131987	793	27071											
PDE10A	10846	broad.mit.edu	37	chr6	165863891	165863891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataaaaacagagtttaaaTaaaatataacaaaaattcct	2	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165863891	A	A	165863891	1	1	10	0	1	0	0	0	0	0	0	0	11724	1421	49	5		5	PDE10A	6	165863891	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1880811	165863891	5251176	794	27072											
RPS6KA2	6196	broad.mit.edu	37	chr6	166944945	166944945	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatttaaaattttctccaAcgtcaaggctgccggaaaat	7	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166944945	T	T	166944945	1	4	10	0	1	0	0	0	0	0	0	0	13762	58	2	5		5	RPS6KA2	6	166944945	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1081054	166944945	4170122	795	27073											
TTLL2	83887	broad.mit.edu	37	chr6	167753987	167753987	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatactttcaggagaggcAgatgctgggcaccaagcata	12	8	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167753987	G	G	167753987	3	3	10	1	0	0	0	0	1	0	0	0	16853	188	7	5	609	5	TTLL2	6	167753987	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	809042	167753987	3361080	796	27074											
MLLT4	4301	broad.mit.edu	37	chr6	168311949	168311949	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccttttttctttgtttttGaaatctttccacagctgaag	5	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168311949	T	T	168311949	1	4	10	0	1	0	0	0	0	0	0	0	9722	1305	45	3		3	MLLT4	6	168311949	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	557962	168311949	2803118	797	27075											
KIF25	3834	broad.mit.edu	37	chr6	168431482	168431482	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcagagtctcagagcgCggtctttggagatgtgtgcc	14	10	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168431482	T	T	168431482	3	4	10	1	0	0	0	0	1	0	0	0	8363	768	27	4	128	4	KIF25	6	168431482	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	119533	168431482	2683585	798	27076											
DLL1	28514	broad.mit.edu	37	chr6	170592416	170592416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcgtccctgacggcggtgtCgtcacccttgaggtcctgca	13	15	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170592416	A	A	170592416	3	1	10	1	0	0	0	0	1	0	0	0	4606	884	31	3	232	3	DLL1	6	170592416	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2160934	170592416	522651	799	27077											
TBP	6908	broad.mit.edu	37	chr6	170880446	170880446	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacaggtcctcattttatcTaaaagcacacaaagctcttg	6	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170880446	C	C	170880446	1	2	10	0	1	0	0	0	0	0	0	0	15766	1537	53	5		5	TBP	6	170880446	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	288030	170880446	234621	800	27078											
SUN1	23353	broad.mit.edu	37	chr7	905691	905691	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacttctcgcagtccccgcGcgtggtcatccaggtgagtg	13	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	905691	A	A	905691	3	1	10	1	0	0	0	0	1	0	0	0	15509	1087	38	4	2212	4	SUN1	7	905691	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08		905691	158232972	801	27079											
MAD1L1	8379	broad.mit.edu	37	chr7	2255701	2255701	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaggccaagagcccgggaGccctgcccctacagggtctg	13	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2255701	A	A	2255701	1	1	10	0	1	0	0	0	0	0	0	0	9235	986	34	4		4	MAD1L1	7	2255701	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1350010	2255701	156882962	802	27080											
SDK1	221935	broad.mit.edu	37	chr7	4248017	4248017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggttcccggcccgcccaGgcggaaggcaacaccttttg	13	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4248017	T	T	4248017	1	4	10	0	1	0	0	0	0	0	0	0	14081	1015	35	2		2	SDK1	7	4248017	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1992316	4248017	154890646	803	27081											
FOXK1	221937	broad.mit.edu	37	chr7	4780536	4780536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctatcacaaagaagagGccccagcctccccgctgcgg	10	17	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4780536	T	T	4780536	3	4	10	1	0	0	0	0	1	0	0	0	6074	1203	42	3	634	3	FOXK1	7	4780536	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	532519	4780536	154358127	804	27082											
MMD2	221938	broad.mit.edu	37	chr7	4950852	4950852	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcgcatgtgggaggcccAggggcccagctcccgaaggt	16	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4950852	G	G	4950852	3	3	10	1	0	0	0	0	1	0	0	0	9737	188	7	5	433	5	MMD2	7	4950852	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	170316	4950852	154187811	805	27083											
DAGLB	221955	broad.mit.edu	37	chr7	6474236	6474236	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcagttaactgctccctGgagggctcatcacagacaga	10	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6474236	C	C	6474236	1	2	10	0	1	0	0	0	0	0	0	0	4260	1363	47	4		4	DAGLB	7	6474236	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1523384	6474236	152664427	806	27084											
C7orf28B	221960	broad.mit.edu	37	chr7	6859747	6859748	+	Intron	DNP	CC	AA	AA													gactgagtgtcaactcagtaCcaattccaagatacaaagtt							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6859748	AA	AA	6859747	1	1	10	0	1	0	0	0	0	0	0	0	2409	522	18	3		3	C7orf28B	7	6859747	Intron	DNP	CC	TCGA-05-4397-01A-01D-1265-08	385511	6859747	152278916	807	27085											
GLCCI1	113263	broad.mit.edu	37	chr7	8099700	8099700	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctttgaccacaaataatttGataccacctttatcttatct	3	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8099700	A	A	8099700	1	1	10	0	1	0	0	0	0	0	0	0	6495	1305	45	4		4	GLCCI1	7	8099700	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1239953	8099700	151038963	808	27086											
THSD7A	221981	broad.mit.edu	37	chr7	11468641	11468641	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttttcacgcagccatttaGaacgaaccttcacaccactc	5	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11468641	A	A	11468641	3	1	10	1	0	0	0	0	1	0	0	0	16002	942	33	4	1853	4	THSD7A	7	11468641	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3368941	11468641	147670022	809	27087											
THSD7A	221981	broad.mit.edu	37	chr7	11501698	11501698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatagaggggatctgtgCagtctcggcccccgttggct	13	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11501698	A	A	11501698	3	1	10	1	0	0	0	0	1	0	0	0	16002	710	25	3	2604	3	THSD7A	7	11501698	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	33057	11501698	147636965	810	27088											
ETV1	2115	broad.mit.edu	37	chr7	13935459	13935459	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcagaaaaaaggaaaagCgcaaaaacgccctgcttgac	9	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13935459	A	A	13935459	1	1	10	0	1	0	0	0	0	0	0	0	5319	783	27	3		3	ETV1	7	13935459	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	2433761	13935459	145203204	811	27089											
DGKB	1607	broad.mit.edu	37	chr7	14216479	14216479	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgtgcatggggtctgCatccatggctccccatcaat	9	14	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14216479	G	G	14216479	3	3	10	1	0	0	0	0	1	0	0	0	4506	710	25	4	145	4	DGKB	7	14216479	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	281020	14216479	144922184	812	27090											
TMEM195	392636	broad.mit.edu	37	chr7	15427053	15427053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaatttcttcactgagaCcaagtcttggtttacctgga	9	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15427053	A	A	15427053	3	1	10	1	0	0	0	0	1	0	0	0	16240	507	18	3	422	3	TMEM195	7	15427053	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1210574	15427053	143711610	813	27091											
SNX13	23161	broad.mit.edu	37	chr7	17885167	17885167	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtattttacaataaaaaatCgaaaaagaaattcaatggct	5	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17885167	A	A	17885167	1	1	10	0	1	0	0	0	0	0	0	0	14998	899	31	3		3	SNX13	7	17885167	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2458114	17885167	141253496	814	27092											
MACC1	346389	broad.mit.edu	37	chr7	20193694	20193694	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagttactagtgcagtgattCagttagtggatcatcttgga	12	5	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20193694	A	A	20193694	1	1	10	0	1	0	0	0	0	0	0	0	9231	841	29	3		3	MACC1	7	20193694	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2308527	20193694	138944969	815	27093											
DNAH11	8701	broad.mit.edu	37	chr7	21779201	21779201	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttcaggtatgatagacaGaaggtgatgcttaaagaaat	10	4	2	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21779201	T	T	21779201	3	4	10	1	0	0	0	0	1	0	0	0	4639	933	33	3	8036	3	DNAH11	7	21779201	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1585507	21779201	137359462	816	27094											
C7orf31	136895	broad.mit.edu	37	chr7	25182019	25182019	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagttatattaccctttaTaggaaaacttacccattcct	4	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25182019	C	C	25182019	1	2	10	0	1	0	0	0	0	0	0	0	2412	1421	49	5		5	C7orf31	7	25182019	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3402818	25182019	133956644	817	27095											
C7orf31	136895	broad.mit.edu	37	chr7	25194768	25194768	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggcgccgcgacagatgtGtgtgtggtaggggtgttcaa	17	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25194768	A	A	25194768	3	1	10	1	0	0	0	0	1	0	0	0	2412	1377	48	4	1335	4	C7orf31	7	25194768	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	12749	25194768	133943895	818	27096											
NPVF	64111	broad.mit.edu	37	chr7	25264661	25264661	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagctgatgaagtgtatgtAgctactcttccgtgtggtct	11	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25264661	T	T	25264661	1	4	10	0	1	0	0	0	0	0	0	0	10700	435	15	5		5	NPVF	7	25264661	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	69893	25264661	133874002	819	27097											
HIBADH	11112	broad.mit.edu	37	chr7	27565754	27565754	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacctttgattaaatccAtttacttgtggagtgagcta	10	6	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27565754	G	G	27565754	1	3	10	0	1	0	0	0	0	0	0	0	7166	232	8	5		5	HIBADH	7	27565754	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	2301093	27565754	131572909	820	27098											
C7orf41	222166	broad.mit.edu	37	chr7	30185980	30185980	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattgtgtttagaataacagGggcggtggggaaggtgggca	19	3	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30185980	A	A	30185980	1	1	10	0	1	0	0	0	0	0	0	0	2416	1247	43	4		4	C7orf41	7	30185980	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2620226	30185980	128952683	821	27099											
GHRHR	2692	broad.mit.edu	37	chr7	31015490	31015490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtctcagtattggtactgTgtgtttgtgtctggggatac	13	6	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31015490	A	A	31015490	1	1	10	0	1	0	0	0	0	0	0	0	6437	1702	59	5		5	GHRHR	7	31015490	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	829510	31015490	128123173	822	27100											
PDE1C	5137	broad.mit.edu	37	chr7	31864497	31864497	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctcgaacgcctctgtcCtgtcccaccagtttgagagg	10	14	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31864497	A	A	31864497	4	1	10	1	0	0	0	0	0	1	0	0	11729	690	24	2	534	2	PDE1C	7	31864497	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	849007	31864497	127274166	823	27101											
NPSR1	387129	broad.mit.edu	37	chr7	34889103	34889103	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatttttcataactattgTctcttaacatgtctacttgc	3	9	3	0	rs13240651		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34889103	A	A	34889103	1	1	10	0	1	0	0	0	0	0	0	0	10695	1682	58	5		5	NPSR1	7	34889103	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3024606	34889103	124249560	824	27102											
ELMO1	9844	broad.mit.edu	37	chr7	36901501	36901501	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaccatgctcttcaaggttCacggcatgattccttctctc	7	13	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36901501	G	G	36901501	1	3	10	0	1	0	0	0	0	0	0	0	5107	841	29	4		4	ELMO1	7	36901501	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2012398	36901501	122237162	825	27103											
AMPH	273	broad.mit.edu	37	chr7	38424511	38424511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgattccttcactcccaCcagccagcctgcatcctgaa	6	17	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38424511	A	A	38424511	3	1	10	1	0	0	0	0	1	0	0	0	588	507	18	3	95	3	AMPH	7	38424511	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1523010	38424511	120714152	826	27104											
VPS41	27072	broad.mit.edu	37	chr7	38791787	38791787	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccttaccttttcaagtgGgcaatgggtactgtctcgga	12	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38791787	A	A	38791787	3	1	10	1	0	0	0	0	1	0	0	0	17337	1232	43	4	681	4	VPS41	7	38791787	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	367276	38791787	120346876	827	27105											
INHBA	3624	broad.mit.edu	37	chr7	41740080	41740080	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttatttttttttttgGtgttttttttttccttctcc	3	5	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41740080	T	T	41740080	1	4	10	0	1	0	0	0	0	0	0	0	7811	1276	44	3		3	INHBA	7	41740080	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	2948293	41740080	117398583	828	27106											
GLI3	2737	broad.mit.edu	37	chr7	42079862	42079862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatataaacaaaaaagaacCtaattacctgcagttggact	5	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42079862	A	A	42079862	1	1	10	0	1	0	0	0	0	0	0	0	6503	696	24	2		2	GLI3	7	42079862	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	339782	42079862	117058801	829	27107											
GLI3	2737	broad.mit.edu	37	chr7	42153073	42153073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacctgctcctccaaagcCagagcaagcctaaaaaggcc	7	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42153073	A	A	42153073	1	1	10	0	1	0	0	0	0	0	0	0	6503	609	21	2		2	GLI3	7	42153073	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	73211	42153073	116985590	830	27108											
GCK	2645	broad.mit.edu	37	chr7	44190624	44190624	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagcttcttgtgtttcatCtgatgcttgtccaggaagtc	11	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44190624	A	A	44190624	3	1	10	1	0	0	0	0	1	0	0	0	6355	912	32	3	1011	3	GCK	7	44190624	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2037551	44190624	114948039	831	27109											
CAMK2B	816	broad.mit.edu	37	chr7	44282850	44282850	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactcaggccaggcctcaccAcatgcccagatgtccacagg	9	16	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44282850	T	T	44282850	4	4	10	1	0	0	0	0	0	1	0	0	2626	173	6	5	1467	5	CAMK2B	7	44282850	Nonsense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	92226	44282850	114855813	832	27110											
ABCA13	154664	broad.mit.edu	37	chr7	48547445	48547445	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcttcgtcaggtgcctgaGagctgctctgttccacccgc	11	14	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48547445	T	T	48547445	1	4	10	0	1	0	0	0	0	0	0	0	31	957	33	3		3	ABCA13	7	48547445	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4264595	48547445	110591218	833	27111											
DDC	1644	broad.mit.edu	37	chr7	50563120	50563120	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgaatctgcaaactgcCaaagaacaagagtaagaaaa	8	6	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50563120	G	G	50563120	1	3	10	0	1	0	0	0	0	0	0	0	4358	609	21	4		4	DDC	7	50563120	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2015675	50563120	108575543	834	27112											
COBL	23242	broad.mit.edu	37	chr7	51258518	51258518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatccgtgtgattatgggCaggtgcgtgagacgcagcgg	17	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51258518	A	A	51258518	1	1	10	0	1	0	0	0	0	0	0	0	3685	725	25	3		3	COBL	7	51258518	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	695398	51258518	107880145	835	27113											
EGFR	1956	broad.mit.edu	37	chr7	55259368	55259368	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attcggatgcagagcttcttCccatgatgatctgtccctca	8	12	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55259368	T	T	55259368	1	4	10	0	1	0	0	0	0	0	0	0	5007	870	30	4		4	EGFR	7	55259368	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4000850	55259368	103879295	836	27114											
ZNF117	51351	broad.mit.edu	37	chr7	64453245	64453245	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttcctaggcaggtcccagCacactcataataagtgtgat	9	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64453245	G	G	64453245	1	3	10	0	1	0	0	0	0	0	0	0	17843	710	25	4		4	ZNF117	7	64453245	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	9193877	64453245	94685418	837	27115											
ASL	435	broad.mit.edu	37	chr7	65554005	65554005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccgtcccacccctccGccagacctggccattgcggc	8	23	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65554005	T	T	65554005	1	4	10	0	1	0	0	0	0	0	0	0	1048	1102	38	3		3	ASL	7	65554005	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1100760	65554005	93584658	838	27116											
AUTS2	26053	broad.mit.edu	37	chr7	70163398	70163398	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaggtctctctcaagcagtCaactagcaccaccttatgga	8	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70163398	T	T	70163398	1	4	10	0	1	0	0	0	0	0	0	0	1230	841	29	4		4	AUTS2	7	70163398	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4609393	70163398	88975265	839	27117											
TYW1B	441250	broad.mit.edu	37	chr7	72094069	72094069	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcaagctttttcaacccaGagaacccagggcaggcaaaa	8	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72094069	C	C	72094069	1	2	10	0	1	0	0	0	0	0	0	0	16945	957	33	4		4	TYW1B	7	72094069	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1930671	72094069	87044594	840	27118											
TYW1B	441250	broad.mit.edu	37	chr7	72267537	72267537	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctctcgaagggttcttcctCctggaagagaaatgcttcag	11	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72267537	A	A	72267537	4	1	10	1	0	0	0	0	0	1	0	0	16945	869	30	3	1440	3	TYW1B	7	72267537	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	173468	72267537	86871126	841	27119											
FKBP6	8468	broad.mit.edu	37	chr7	72743206	72743206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccaaagggccggcacCcaaaatgcagagagaagatt	12	10	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72743206	A	A	72743206	1	1	10	0	1	0	0	0	0	0	0	0	5969	638	22	2		2	FKBP6	7	72743206	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	475669	72743206	86395457	842	27120											
EIF4H	7458	broad.mit.edu	37	chr7	73608900	73608900	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttagcgctgtcattactccAcacattggcatttggaccca	8	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73608900	G	G	73608900	1	3	10	0	1	0	0	0	0	0	0	0	5081	174	6	5		5	EIF4H	7	73608900	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	865694	73608900	85529763	843	27121											
CCDC146	57639	broad.mit.edu	37	chr7	76916430	76916430	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacacttgccaaaagaagttCcaatccagtggtttcgagat	9	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76916430	G	G	76916430	1	3	10	0	1	0	0	0	0	0	0	0	2806	870	30	4		4	CCDC146	7	76916430	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3307530	76916430	82222233	844	27122											
GNAI1	2770	broad.mit.edu	37	chr7	79818431	79818431	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccatgaagctggttattcaGaagaggagtgtaaacaatac	10	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79818431	T	T	79818431	4	4	10	1	0	0	0	0	0	1	0	0	6568	943	33	3	197	3	GNAI1	7	79818431	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2902001	79818431	79320232	845	27123											
CD36	948	broad.mit.edu	37	chr7	80300567	80300567	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccataatcctttagcaacCaaaatttaaaatatatcata	1	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80300567	T	T	80300567	1	4	10	0	1	0	0	0	0	0	0	0	3037	609	21	4		4	CD36	7	80300567	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	482136	80300567	78838096	846	27124											
CACNA2D1	781	broad.mit.edu	37	chr7	81593347	81593348	+	Intron	INS	-	A	A													aacttctttctttcattaccINSaataaaactaaaattttgac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81593348	A	A	81593347	6	5	10	0	1	1	1	0	0	0	0	0	2574	609	21	0		0	CACNA2D1	7	81593347	Intron	INS	-	TCGA-05-4397-01A-01D-1265-08	1292780	81593347	77545316	847	27125											
PCLO	27445	broad.mit.edu	37	chr7	82544020	82544020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcactgtctgacatggCatgttggaagtcatccatga	9	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82544020	A	A	82544020	3	1	10	1	0	0	0	0	1	0	0	0	11677	710	25	3	2239	3	PCLO	7	82544020	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	950673	82544020	76594643	848	27126											
PCLO	27445	broad.mit.edu	37	chr7	82581186	82581186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacctgtagtaactctcCctgaagtcagatctactgct	7	12	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82581186	A	A	82581186	3	1	10	1	0	0	0	0	1	0	0	0	11677	623	22	2	6446	2	PCLO	7	82581186	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	37166	82581186	76557477	849	27127											
SEMA3D	223117	broad.mit.edu	37	chr7	84644268	84644268	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atattccttccataggacatGttagtaatatattttctctt	4	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84644268	C	C	84644268	1	2	10	0	1	0	0	0	0	0	0	0	14140	1392	48	4		4	SEMA3D	7	84644268	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2063082	84644268	74494395	850	27128											
C7orf63	79846	broad.mit.edu	37	chr7	89897845	89897845	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagtcttgagctctttggtCatcttttgaaagttatatat	8	5	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89897845	A	A	89897845	1	1	10	0	1	0	0	0	0	0	0	0	2434	841	29	3		3	C7orf63	7	89897845	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	5253577	89897845	69240818	851	27129											
C7orf63	79846	broad.mit.edu	37	chr7	89934242	89934242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcatctacatactgtataGtttttatttttcattttgca	3	6	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89934242	T	T	89934242	1	4	10	0	1	0	0	0	0	0	0	0	2434	1044	36	3		3	C7orf63	7	89934242	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	36397	89934242	69204421	852	27130											
HEPACAM2	253012	broad.mit.edu	37	chr7	92844989	92844989	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatctgcaccactggctttGtgacaggatctgcaatatta	9	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92844989	C	C	92844989	3	2	10	1	0	0	0	0	1	0	0	0	7120	1377	48	4	980	4	HEPACAM2	7	92844989	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2910747	92844989	66293674	853	27131											
COL1A2	1278	broad.mit.edu	37	chr7	94051176	94051176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaattcttggagttgatGttgactgtggaattctaatg	10	6	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94051176	T	T	94051176	1	4	10	0	1	0	0	0	0	0	0	0	3710	1392	48	3		3	COL1A2	7	94051176	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1206187	94051176	65087487	854	27132											
COL1A2	1278	broad.mit.edu	37	chr7	94056935	94056935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatctcactttcacctttGcagggcccccctggtccccc	6	20	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94056935	T	T	94056935	1	4	10	0	1	0	0	0	0	0	0	0	3710	1334	46	3		3	COL1A2	7	94056935	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	5759	94056935	65081728	855	27133											
SHFM1	7979	broad.mit.edu	37	chr7	96303020	96303020	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctccaatcctgtgcatcCcagctctttacatttaggtg	7	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96303020	A	A	96303020	1	1	10	0	1	0	0	0	0	0	0	0	14391	638	22	2		2	SHFM1	7	96303020	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	2246085	96303020	62835643	856	27134											
TAC1	6863	broad.mit.edu	37	chr7	97362212	97362212	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcactatttcccgggttcccCacgggattttgtgcccacga	10	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97362212	G	G	97362212	1	3	10	0	1	0	0	0	0	0	0	0	15617	609	21	4		4	TAC1	7	97362212	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1059192	97362212	61776451	857	27135											
TRRAP	8295	broad.mit.edu	37	chr7	98560090	98560090	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgttcgtggtggctcagtTtggcctctttccccgctcac	12	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98560090	G	G	98560090	1	3	10	0	1	0	0	0	0	0	0	0	16726	1856	64	5		5	TRRAP	7	98560090	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1197878	98560090	60578573	858	27136											
ZKSCAN5	23660	broad.mit.edu	37	chr7	99110023	99110023	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caccatgattctactgatttCtttcgtggccttctctgtaa	6	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99110023	G	G	99110023	1	3	10	0	1	0	0	0	0	0	0	0	17816	928	32	4		4	ZKSCAN5	7	99110023	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	549933	99110023	60028640	859	27137											
ZNF498	221785	broad.mit.edu	37	chr7	99220250	99220250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggcagctgggttctttaCtgctggatcgcaggtgagct	15	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99220250	A	A	99220250	3	1	10	1	0	0	0	0	1	0	0	0	18074	565	20	3	678	3	ZNF498	7	99220250	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	110227	99220250	59918413	860	27138											
CYP3A5	1577	broad.mit.edu	37	chr7	99293354	99293354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagaagccaaagagtgagCtcaaaaacactcacctgatg	8	9	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99293354	A	A	99293354	1	1	10	0	1	0	0	0	0	0	0	0	4213	812	28	3		3	CYP3A5	7	99293354	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	73104	99293354	59845309	861	27139											
STAG3	10734	broad.mit.edu	37	chr7	99802356	99802356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgccttgagttttggacCccagcagctgcagaaccgtg	12	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99802356	A	A	99802356	3	1	10	1	0	0	0	0	1	0	0	0	15362	623	22	2	3011	2	STAG3	7	99802356	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	509002	99802356	59336307	862	27140											
C7orf47	221908	broad.mit.edu	37	chr7	100033311	100033311	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaatttctccctgagcgcGgcattcagaacctgttcctc	8	15	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100033311	T	T	100033311	2	4	10	1	0	0	0	0	0	0	0	1	2422	1103	39	1		1	C7orf47	7	100033311	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	230955	100033311	59105352	863	27141											
TRIM56	81844	broad.mit.edu	37	chr7	100730380	100730380	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaggagaaggaggaggGcagctccttagctcaagagc	18	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100730380	T	T	100730380	1	4	10	0	1	0	0	0	0	0	0	0	16655	1218	42	3		3	TRIM56	7	100730380	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	697069	100730380	58408283	864	27142											
RELN	5649	broad.mit.edu	37	chr7	103270661	103270661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaatttagattattttGgtatcttaaaacacaaatat	4	4	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103270661	T	T	103270661	1	4	10	0	1	0	0	0	0	0	0	0	13328	1363	47	2		2	RELN	7	103270661	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2540281	103270661	55868002	865	27143											
RELN	5649	broad.mit.edu	37	chr7	103276759	103276759	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccagggccttaccactGgccaagacaccacaaccaaa	6	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103276759	T	T	103276759	2	4	10	1	0	0	0	0	0	0	0	1	13328	1335	47	2		2	RELN	7	103276759	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	6098	103276759	55861904	866	27144											
PIK3CG	5294	broad.mit.edu	37	chr7	106515263	106515263	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggcagtaggtatcacttgGatgtctccatgtggtcttta	11	8	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106515263	T	T	106515263	1	4	10	0	1	0	0	0	0	0	0	0	12011	1189	41	3		3	PIK3CG	7	106515263	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3238504	106515263	52623400	867	27145											
PIK3CG	5294	broad.mit.edu	37	chr7	106526625	106526625	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacattcttgggaattacaAaagtttcctgggcattaata	8	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106526625	G	G	106526625	3	3	10	1	0	0	0	0	1	0	0	0	12011	14	1	5	2952	5	PIK3CG	7	106526625	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	11362	106526625	52612038	868	27146											
CBLL1	79872	broad.mit.edu	37	chr7	107398942	107398942	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatattcgtgctcctccagcAgaattgtccatggctccacc	8	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107398942	G	G	107398942	2	3	10	1	0	0	0	0	0	0	0	1	2729	175	7	5		5	CBLL1	7	107398942	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	872317	107398942	51739721	869	27147											
GPR85	54329	broad.mit.edu	37	chr7	112724477	112724477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaacaggacaaaaccccCagaaaggcaatcactttgca	8	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112724477	A	A	112724477	2	1	10	1	0	0	0	0	0	0	0	1	6780	581	21	2		2	GPR85	7	112724477	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	5325535	112724477	46414186	870	27148											
MDFIC	29969	broad.mit.edu	37	chr7	114619883	114619883	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgaccagatgtaaaataAtatttcctggtaattatttg	6	4	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114619883	C	C	114619883	1	2	10	0	1	0	0	0	0	0	0	0	9498	116	4	5		5	MDFIC	7	114619883	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1895406	114619883	44518780	871	27149											
ASZ1	136991	broad.mit.edu	37	chr7	117067532	117067532	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccagccaaggaagctcCctgtcggcaccgcgcgccct	11	18	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117067532	A	A	117067532	1	1	10	0	1	0	0	0	0	0	0	0	1073	638	22	2		2	ASZ1	7	117067532	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	2447649	117067532	42071131	872	27150											
FEZF1	389549	broad.mit.edu	37	chr7	121942184	121942184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggttcgccagctggcGtgcgggccagccccaggctg	16	15	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121942184	T	T	121942184	3	4	10	1	0	0	0	0	1	0	0	0	5882	1145	40	3	136	3	FEZF1	7	121942184	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4874652	121942184	37196479	873	27151											
TAS2R16	50833	broad.mit.edu	37	chr7	122635274	122635274	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgaagggatgattgttaCacaagtaatcatcagagaac	10	6	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122635274	G	G	122635274	3	3	10	1	0	0	0	0	1	0	0	0	15688	478	17	4	464	4	TAS2R16	7	122635274	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	693090	122635274	36503389	874	27152											
LMOD2	442721	broad.mit.edu	37	chr7	123302795	123302795	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctggcaaagaggaacaccTagctcttcaccttatgtatc	8	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123302795	A	A	123302795	2	1	10	1	0	0	0	0	0	0	0	1	8931	1509	53	5		5	LMOD2	7	123302795	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	667521	123302795	35835868	875	27153											
GRM8	2918	broad.mit.edu	37	chr7	126173425	126173425	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatattcggtggatacggtTtgttttggtcagaagggctg	14	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126173425	A	A	126173425	3	1	10	1	0	0	0	0	1	0	0	0	6869	1841	64	5	777	5	GRM8	7	126173425	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2870630	126173425	32965238	876	27154											
FLNC	2318	broad.mit.edu	37	chr7	128478258	128478258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccttggcctggctgtgCccctctgccccctctcagga	9	20	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128478258	A	A	128478258	1	1	10	0	1	0	0	0	0	0	0	0	5993	754	26	3		3	FLNC	7	128478258	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2304833	128478258	30660405	877	27155											
MKLN1	4289	broad.mit.edu	37	chr7	131155493	131155493	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacattttctaaatatccaGaacaactcctcatactcagt	3	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131155493	C	C	131155493	1	2	10	0	1	0	0	0	0	0	0	0	9696	957	33	4		4	MKLN1	7	131155493	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2677235	131155493	27983170	878	27156											
WDR91	29062	broad.mit.edu	37	chr7	134877936	134877936	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcagaaacccaggggaataCagagtgtgtgcctggcccca	12	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134877936	G	G	134877936	1	3	10	0	1	0	0	0	0	0	0	0	17465	493	17	4		4	WDR91	7	134877936	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3722443	134877936	24260727	879	27157											
STRA8	346673	broad.mit.edu	37	chr7	134925343	134925343	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagctgccagcacagctgCaggagcttgagcatcgggtg	14	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134925343	T	T	134925343	4	4	10	1	0	0	0	0	0	1	0	0	15441	711	25	4	139	4	STRA8	7	134925343	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	47407	134925343	24213320	880	27158											
NUP205	23165	broad.mit.edu	37	chr7	135290909	135290909	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtataagtcagaaacTaatggctggatttgtggagt	12	4	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135290909	C	C	135290909	3	2	10	1	0	0	0	0	1	0	0	0	10854	1522	53	5	2918	5	NUP205	7	135290909	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	365566	135290909	23847754	881	27159											
DENND2A	27147	broad.mit.edu	37	chr7	140246714	140246714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagggcaggagagatgcctCgtcttttttccacctcatcc	9	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140246714	T	T	140246714	3	4	10	1	0	0	0	0	1	0	0	0	4469	884	31	4	998	4	DENND2A	7	140246714	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	4955805	140246714	18891949	882	27160											
WEE2	494551	broad.mit.edu	37	chr7	141416176	141416176	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccctcctcccttcttcccTaccctcccttttctccttcc	0	24	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141416176	A	A	141416176	1	1	10	0	1	0	0	0	0	0	0	0	17472	1537	53	5		5	WEE2	7	141416176	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1169462	141416176	17722487	883	27161											
MGAM	8972	broad.mit.edu	37	chr7	141767072	141767072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacttggatctgaacttgaGgagcttcttcagagtgtcgg	13	8	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141767072	T	T	141767072	1	4	10	0	1	0	0	0	0	0	0	0	9634	1015	35	2		2	MGAM	7	141767072	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	350896	141767072	17371591	884	27162											
LOC441294	441294	broad.mit.edu	37	chr7	143268923	143268923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgacgctatggaggagcccGgtgctacccctcagccctac	11	16	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143268923	T	T	143268923	3	4	10	1	0	0	0	0	1	0	0	0	8963	1116	39	1	15	1	LOC441294	7	143268923	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1501851	143268923	15869740	885	27163											
OR2F1	26211	broad.mit.edu	37	chr7	143657783	143657783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagaaagctttccacacGtgtgcctctcacctcacagt	7	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143657783	T	T	143657783	2	4	10	1	0	0	0	0	0	0	0	1	11090	1132	40	3		3	OR2F1	7	143657783	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	388860	143657783	15480880	886	27164											
OR2A12	346525	broad.mit.edu	37	chr7	143792896	143792896	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatccagtctggggagggCcgcagaaaggccttctctac	14	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143792896	A	A	143792896	2	1	10	1	0	0	0	0	0	0	0	1	11069	726	26	3		3	OR2A12	7	143792896	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	135113	143792896	15345767	887	27165											
SSPO	23145	broad.mit.edu	37	chr7	149508066	149508066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcacctctaccccccgGgcagcactgtggttcgtcca	12	16	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149508066	T	T	149508066	3	4	10	1	0	0	0	0	1	0	0	0	15307	1232	43	2	9716	2	SSPO	7	149508066	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5715170	149508066	9630597	888	27166											
ASB10	136371	broad.mit.edu	37	chr7	150873154	150873154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgccttccacacatccCtggaccccaagcagctgtga	7	17	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150873154	T	T	150873154	1	4	10	0	1	0	0	0	0	0	0	0	1018	696	24	4		4	ASB10	7	150873154	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1365088	150873154	8265509	889	27167											
MLL3	58508	broad.mit.edu	37	chr7	151962241	151962241	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagtagtacaaaagaactGatctaagaggtctcccgggc	10	9	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151962241	T	T	151962241	3	4	10	1	0	0	0	0	1	0	0	0	9715	1299	45	3	13877	3	MLL3	7	151962241	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1089087	151962241	7176422	890	27168											
MLL3	58508	broad.mit.edu	37	chr7	151970897	151970897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataatgatacatctgggtaCatttctcttcacagcatttg	7	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151970897	A	A	151970897	3	1	10	1	0	0	0	0	1	0	0	0	9715	478	17	3	14042	3	MLL3	7	151970897	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	8656	151970897	7167766	891	27169											
ESYT2	57488	broad.mit.edu	37	chr7	158540942	158540942	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagtgaagttttcctcCcacacaggttcattggtttt	8	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158540942	A	A	158540942	3	1	10	1	0	0	0	0	1	0	0	0	5307	624	22	2	1045	2	ESYT2	7	158540942	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	6570045	158540942	597721	892	27170											
MYOM2	9172	broad.mit.edu	37	chr8	2027413	2027413	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccttcgttatggttgtaagcGagccactatattttccttac	7	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2027413	C	C	2027413	1	2	10	0	1	0	0	0	0	0	0	0	10186	1073	37	4		4	MYOM2	8	2027413	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08		2027413	144336609	893	27171											
CSMD1	64478	broad.mit.edu	37	chr8	4645293	4645294	+	Intron	DNP	GG	AT	AT													ctgcaaaattttgcttcgctGgacttgttacaggccagact							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	4645294	AT	AT	4645293	1	1	10	0	1	0	0	0	0	0	0	0	3978	1363	47	4		4	CSMD1	8	4645293	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	2617880	4645293	141718729	894	27172											
ANGPT2	285	broad.mit.edu	37	chr8	6389855	6389855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgtggcattacttacttGggcttccacatcagttaact	7	9	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6389855	T	T	6389855	3	4	10	1	0	0	0	0	1	0	0	0	611	1357	47	2	1080	2	ANGPT2	8	6389855	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1744562	6389855	139974167	895	27173											
DEFA4	1669	broad.mit.edu	37	chr8	6794318	6794318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctggtcttctggcccaCgctgctcctggcctggagcc	12	16	2	0	rs149266478		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6794318	A	A	6794318	3	1	10	1	0	0	0	0	1	0	0	0	4424	536	19	3	197	3	DEFA4	8	6794318	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	404463	6794318	139569704	896	27174											
TNKS	8658	broad.mit.edu	37	chr8	9619187	9619187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatttcagaaatcagtGgtacaaggtaagtattgggg	11	3	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9619187	T	T	9619187	1	4	10	0	1	0	0	0	0	0	0	0	16442	1363	47	2		2	TNKS	8	9619187	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2824869	9619187	136744835	897	27175											
MSRA	4482	broad.mit.edu	37	chr8	10177494	10177494	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagctccaaagagaactacCaaaaggtagggattgctggg	13	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10177494	T	T	10177494	4	4	10	1	0	0	0	0	0	1	0	0	9981	595	21	4	573	4	MSRA	8	10177494	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	558307	10177494	136186528	898	27176											
TUSC3	7991	broad.mit.edu	37	chr8	15480671	15480671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgaatggtgataaattccGaaaatttataaaggcaccac	7	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15480671	T	T	15480671	3	4	10	1	0	0	0	0	1	0	0	0	16904	1058	37	3	227	3	TUSC3	8	15480671	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5303177	15480671	130883351	899	27177											
MSR1	4481	broad.mit.edu	37	chr8	15998538	15998538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccctgccctaatatgatcAgtgagttgtactggtcctga	11	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15998538	G	G	15998538	1	3	10	0	1	0	0	0	0	0	0	0	9980	175	7	5		5	MSR1	8	15998538	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	517867	15998538	130365484	900	27178											
MTMR7	9108	broad.mit.edu	37	chr8	17228696	17228696	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctcaatggtggaaatctGactgtgaagaatctagaacc	9	7	3	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17228696	A	A	17228696	4	1	10	1	0	0	0	0	0	1	0	0	10042	1299	45	4	1870	4	MTMR7	8	17228696	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1230158	17228696	129135326	901	27179											
LPL	4023	broad.mit.edu	37	chr8	19805998	19805998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagacagttctggctcagGtgggatctgaagccacaggt	13	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19805998	T	T	19805998	1	4	10	0	1	0	0	0	0	0	0	0	9008	1276	44	3		3	LPL	8	19805998	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2577302	19805998	126558024	902	27180											
SLC18A1	6570	broad.mit.edu	37	chr8	20004895	20004895	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacaatggcaccaccggtGgatggacctgggagggatac	14	9	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20004895	T	T	20004895	2	4	10	1	0	0	0	0	0	0	0	1	14538	1335	47	2		2	SLC18A1	8	20004895	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	198897	20004895	126359127	903	27181											
XPO7	23039	broad.mit.edu	37	chr8	21823718	21823718	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgagcatatgctagggttGaatttattttgacgctttca	10	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21823718	A	A	21823718	1	1	10	0	1	0	0	0	0	0	0	0	17576	1305	45	4		4	XPO7	8	21823718	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1818823	21823718	124540304	904	27182											
XPO7	23039	broad.mit.edu	37	chr8	21827939	21827939	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactttttaaacatgacacAaaatagaattatatgatata	3	5	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21827939	G	G	21827939	1	3	10	0	1	0	0	0	0	0	0	0	17576	145	5	5		5	XPO7	8	21827939	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	4221	21827939	124536083	905	27183											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24261644	24261644	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaaacgttttctcacgTttatttcagatttgagaaaa	5	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24261644	C	C	24261644	1	2	10	0	1	0	0	0	0	0	0	0	254	1740	60	5		5	ADAMDEC1	8	24261644	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2433705	24261644	122102378	906	27184											
DOCK5	80005	broad.mit.edu	37	chr8	25222219	25222219	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcaagctttgaacttcAggtaggcatgtgactcacct	10	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25222219	T	T	25222219	3	4	10	1	0	0	0	0	1	0	0	0	4730	202	7	5	3240	5	DOCK5	8	25222219	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	960575	25222219	121141803	907	27185											
TEX15	56154	broad.mit.edu	37	chr8	30703090	30703090	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acactgctattataataaacTgactgacttgtactttggga	7	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30703090	A	A	30703090	2	1	10	1	0	0	0	0	0	0	0	1	15901	1567	55	5		5	TEX15	8	30703090	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	5480871	30703090	115660932	908	27186											
TEX15	56154	broad.mit.edu	37	chr8	30706080	30706080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaggaaaaattaccttGgtccttacattgccctgcca	9	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30706080	T	T	30706080	3	4	10	1	0	0	0	0	1	0	0	0	15901	1357	47	2	7931	2	TEX15	8	30706080	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2990	30706080	115657942	909	27187											
PURG	29942	broad.mit.edu	37	chr8	30890181	30890181	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgaggccgcgtagtgggGgtagtgggagtgctgggcct	22	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30890181	C	C	30890181	3	2	10	1	0	0	0	0	1	0	0	0	12937	1232	43	4	1038	4	PURG	8	30890181	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	184101	30890181	115473841	910	27188											
NRG1	3084	broad.mit.edu	37	chr8	32620796	32620796	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatccaaatgcatgcagatCcagctatcagcaactcatct	6	12	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32620796	A	A	32620796	1	1	10	0	1	0	0	0	0	0	0	0	10742	845	30	3		3	NRG1	8	32620796	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1730615	32620796	113743226	911	27189											
KCNU1	157855	broad.mit.edu	37	chr8	36644949	36644949	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggggcaagtgttggtaagTacattttcagtgttagcttg	14	4	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36644949	G	G	36644949	1	3	10	0	1	0	0	0	0	0	0	0	8163	1653	57	5		5	KCNU1	8	36644949	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	4024153	36644949	109719073	912	27190											
KCNU1	157855	broad.mit.edu	37	chr8	36766804	36766804	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttgcttatgaaaatgacCagactgtggcatccttatcc	7	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36766804	T	T	36766804	1	4	10	0	1	0	0	0	0	0	0	0	8163	609	21	4		4	KCNU1	8	36766804	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	121855	36766804	109597218	913	27191											
GPR124	25960	broad.mit.edu	37	chr8	37686952	37686952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcccacctgctctcctccGccggcccatggacaccctaa	6	21	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37686952	A	A	37686952	1	1	10	0	1	0	0	0	0	0	0	0	6703	1102	38	4		4	GPR124	8	37686952	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	920148	37686952	108677070	914	27192											
ADAM2	2515	broad.mit.edu	37	chr8	39695544	39695544	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaattgctgagttggaAacccctcaggaaagcatcct	10	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39695544	C	C	39695544	1	2	10	0	1	0	0	0	0	0	0	0	241	29	1	5		5	ADAM2	8	39695544	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2008592	39695544	106668478	915	27193											
ANK1	286	broad.mit.edu	37	chr8	41550662	41550662	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaagttggcgcactcgttgGcatatacaagtttggtggtt	13	6	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41550662	C	C	41550662	3	2	10	1	0	0	0	0	1	0	0	0	620	1203	42	4	2433	4	ANK1	8	41550662	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1855118	41550662	104813360	916	27194											
CHRNA6	8973	broad.mit.edu	37	chr8	42620311	42620311	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatgagaaaacagtttgTggaagagcctctcctcagtt	10	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42620311	C	C	42620311	3	2	10	1	0	0	0	0	1	0	0	0	3418	1696	59	5	1388	5	CHRNA6	8	42620311	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1069649	42620311	103743711	917	27195											
HOOK3	84376	broad.mit.edu	37	chr8	42829390	42829390	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttttttttgagacgGgagtttcactcttattgccc	7	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42829390	A	A	42829390	1	1	10	0	1	0	0	0	0	0	0	0	7351	1247	43	4		4	HOOK3	8	42829390	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	209079	42829390	103534632	918	27196											
HGSNAT	138050	broad.mit.edu	37	chr8	43047444	43047444	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatatgcttttcaccttccTagtggttatcttggtcctgg	8	10	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43047444	A	A	43047444	1	1	10	0	1	0	0	0	0	0	0	0	7155	1537	53	5		5	HGSNAT	8	43047444	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	218054	43047444	103316578	919	27197											
POTEA	340441	broad.mit.edu	37	chr8	43172404	43172404	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccatacttgattacttAagaataaaattattttaaaa	3	4	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43172404	T	T	43172404	1	4	10	0	1	0	0	0	0	0	0	0	12356	377	13	5		5	POTEA	8	43172404	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	124960	43172404	103191618	920	27198											
KIAA0146	23514	broad.mit.edu	37	chr8	48647874	48647874	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttatcactgcagagctaCgaagtgaagagtgtcctcgg	11	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48647874	G	G	48647874	4	3	10	1	0	0	0	0	0	1	0	0	8227	547	19	4	2688	4	KIAA0146	8	48647874	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5475470	48647874	97716148	921	27199											
PRKDC	5591	broad.mit.edu	37	chr8	48733455	48733455	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggactggtcagcctctcccTggagcagcagcttcagcttg	13	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48733455	G	G	48733455	3	3	10	1	0	0	0	0	1	0	0	0	12627	1580	55	5	3309	5	PRKDC	8	48733455	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	85581	48733455	97630567	922	27200											
PXDNL	137902	broad.mit.edu	37	chr8	52469407	52469407	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctattacttacagatgttCcaaagatatgagtcctttaa	5	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52469407	G	G	52469407	3	3	10	1	0	0	0	0	1	0	0	0	12956	864	30	4	4098	4	PXDNL	8	52469407	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3735952	52469407	93894615	923	27201											
ST18	9705	broad.mit.edu	37	chr8	53079696	53079696	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaacaagaccctcaacTaagacctgtggaaacggaaa	8	11	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53079696	G	G	53079696	1	3	10	0	1	0	0	0	0	0	0	0	15330	1537	53	5		5	ST18	8	53079696	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	610289	53079696	93284326	924	27202											
PLAG1	5324	broad.mit.edu	37	chr8	57080660	57080660	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtagggcctctctcctgTgtgagagtaggagtgaacct	13	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57080660	C	C	57080660	3	2	10	1	0	0	0	0	1	0	0	0	12113	1696	59	5	1341	5	PLAG1	8	57080660	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	4000964	57080660	89283362	925	27203											
UBXN2B	137886	broad.mit.edu	37	chr8	59358602	59358602	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcagatgggagtcgtttgAtacaaagattcaatagtaca	10	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59358602	T	T	59358602	3	4	10	1	0	0	0	0	1	0	0	0	17041	333	12	5	834	5	UBXN2B	8	59358602	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	2277942	59358602	87005420	926	27204											
CYP7A1	1581	broad.mit.edu	37	chr8	59409478	59409478	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttagaatatgtgctttcTgtgtgtcccgccttgtaaga	10	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59409478	C	C	59409478	3	2	10	1	0	0	0	0	1	0	0	0	4229	1580	55	5	937	5	CYP7A1	8	59409478	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	50876	59409478	86954544	927	27205											
NKAIN3	286183	broad.mit.edu	37	chr8	63768343	63768343	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaaagggcatcttcctttTatcatcagcaaagagtaaaa	7	7	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63768343	A	A	63768343	1	1	10	0	1	0	0	0	0	0	0	0	10532	1769	61	5		5	NKAIN3	8	63768343	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	4358865	63768343	82595679	928	27206											
TTPA	7274	broad.mit.edu	37	chr8	63974015	63974015	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaacactttagaaggaaaCcgcattagatgcatttccag	7	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63974015	T	T	63974015	1	4	10	0	1	0	0	0	0	0	0	0	16862	522	18	4		4	TTPA	8	63974015	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	205672	63974015	82390007	929	27207											
TRIM55	84675	broad.mit.edu	37	chr8	67049306	67049306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaaacccctaagatattGggttcatgttttctcttcat	7	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67049306	T	T	67049306	1	4	10	0	1	0	0	0	0	0	0	0	16654	1363	47	2		2	TRIM55	8	67049306	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3075291	67049306	79314716	930	27208											
CRH	1392	broad.mit.edu	37	chr8	67089174	67089174	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtgagcttgctgtgctAactgctcggccctggccatt	12	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67089174	T	T	67089174	4	4	10	1	0	0	0	0	0	1	0	0	3901	372	13	5	55	5	CRH	8	67089174	Nonsense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	39868	67089174	79274848	931	27209											
MYBL1	4603	broad.mit.edu	37	chr8	67488548	67488548	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttaactggggtggatttGataggagaagcagcagcatc	13	5	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67488548	C	C	67488548	3	2	10	1	0	0	0	0	1	0	0	0	10103	1280	45	4	1122	4	MYBL1	8	67488548	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	399374	67488548	78875474	932	27210											
EYA1	2138	broad.mit.edu	37	chr8	72211967	72211967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgctacctaaaacaaaaTgaaaagaaatacgattatac	4	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72211967	C	C	72211967	1	2	10	0	1	0	0	0	0	0	0	0	5371	1479	51	5		5	EYA1	8	72211967	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	4723419	72211967	74152055	933	27211											
TRPA1	8989	broad.mit.edu	37	chr8	72975803	72975803	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatggcttagctcctttttTaagctggaagaaaagacaaa	8	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72975803	C	C	72975803	3	2	10	1	0	0	0	0	1	0	0	0	16702	1763	61	5	2895	5	TRPA1	8	72975803	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	763836	72975803	73388219	934	27212											
KCNB2	9312	broad.mit.edu	37	chr8	73849879	73849879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaagaaaccccctcccaGggagacagacccttgctggg	11	13	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73849879	T	T	73849879	3	4	10	1	0	0	0	0	1	0	0	0	8083	991	35	2	2295	2	KCNB2	8	73849879	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	874076	73849879	72514143	935	27213											
ZFHX4	79776	broad.mit.edu	37	chr8	77767525	77767525	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttaaatgcccctcctgctGaggctgggtatgatcaaaat	9	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767525	A	A	77767525	3	1	10	1	0	0	0	0	1	0	0	0	17761	1291	45	4	8402	4	ZFHX4	8	77767525	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3917646	77767525	68596497	936	27214											
FAM164A	51101	broad.mit.edu	37	chr8	79629425	79629425	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttactaacaaggattttTtaaaatttgaactagaggaa	6	3	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79629425	G	G	79629425	1	3	10	0	1	0	0	0	0	0	0	0	5523	1856	64	5		5	FAM164A	8	79629425	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1861900	79629425	66734597	937	27215											
IL7	3574	broad.mit.edu	37	chr8	79673961	79673961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctagcatctgcctctgcTgtgtttttgaacaaaacaac	6	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79673961	A	A	79673961	1	1	10	0	1	0	0	0	0	0	0	0	7774	1595	55	5		5	IL7	8	79673961	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	44536	79673961	66690061	938	27216											
SLC7A13	157724	broad.mit.edu	37	chr8	87229891	87229891	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagagtgactattaagTgtattaaatagcaaaggcag	12	3	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87229891	A	A	87229891	2	1	10	1	0	0	0	0	0	0	0	1	14809	1683	59	5		5	SLC7A13	8	87229891	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	7555930	87229891	59134131	939	27217											
CNGB3	54714	broad.mit.edu	37	chr8	87680295	87680295	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaattcgctttaagtactCtgttaaaggcatctttttga	6	6	2	1	rs114305748	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87680295	G	G	87680295	3	3	10	1	0	0	0	0	1	0	0	0	3633	922	32	4	1890	4	CNGB3	8	87680295	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	450404	87680295	58683727	940	27218											
CNBD1	168975	broad.mit.edu	37	chr8	88296931	88296931	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaatggagtacctttgggaCtctggaagttatgcctcaga	11	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88296931	G	G	88296931	3	3	10	1	0	0	0	0	1	0	0	0	3623	565	20	4	823	4	CNBD1	8	88296931	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	616636	88296931	58067091	941	27219											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885768	88885768	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaagtcccacgaagcaCagcagaaggtgggaatccaa	11	11	1	1	rs146041051	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88885768	G	G	88885768	2	3	10	1	0	0	0	0	0	0	0	1	4305	465	17	4		4	DCAF4L2	8	88885768	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	588837	88885768	57478254	942	27220											
MMP16	4325	broad.mit.edu	37	chr8	89086811	89086811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattaaaatacaacatagcCagatatggaaaacatcctta	5	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89086811	A	A	89086811	1	1	10	0	1	0	0	0	0	0	0	0	9748	609	21	2		2	MMP16	8	89086811	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	201043	89086811	57277211	943	27221											
RAD54B	25788	broad.mit.edu	37	chr8	95412520	95412520	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctagccatttttgaaattcTttcttccaattattcaccaa	2	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95412520	A	A	95412520	3	1	10	1	0	0	0	0	1	0	0	0	13100	1606	56	5	1652	5	RAD54B	8	95412520	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	6325709	95412520	50951502	944	27222											
KIAA1429	25962	broad.mit.edu	37	chr8	95539314	95539314	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatacaaatctaagagttcTgttaacttcactgaggcttc	6	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95539314	A	A	95539314	2	1	10	1	0	0	0	0	0	0	0	1	8301	1567	55	5		5	KIAA1429	8	95539314	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	126794	95539314	50824708	945	27223											
DPY19L4	286148	broad.mit.edu	37	chr8	95782853	95782853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagattgttggctgagtgCggtgactcacacctgtaatc	11	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95782853	T	T	95782853	1	4	10	0	1	0	0	0	0	0	0	0	4783	783	27	4		4	DPY19L4	8	95782853	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	243539	95782853	50581169	946	27224											
VPS13B	157680	broad.mit.edu	37	chr8	100830883	100830883	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttgtttcagcatcaaacAgctggaatactgcaacaaag	8	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100830883	G	G	100830883	1	3	10	0	1	0	0	0	0	0	0	0	17317	203	7	5		5	VPS13B	8	100830883	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	5048030	100830883	45533139	947	27225											
NCALD	83988	broad.mit.edu	37	chr8	102884659	102884659	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaccactgactgctgaAggatgtgctgctcctcttct	9	12	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102884659	T	T	102884659	1	4	10	0	1	0	0	0	0	0	0	0	10296	87	3	5		5	NCALD	8	102884659	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2053776	102884659	43479363	948	27226											
RIMS2	9699	broad.mit.edu	37	chr8	105257017	105257017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaataccttttctttctGcctccttaacaagagcactt	3	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105257017	A	A	105257017	1	1	10	0	1	0	0	0	0	0	0	0	13479	1334	46	4		4	RIMS2	8	105257017	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2372358	105257017	41107005	949	27227											
OXR1	55074	broad.mit.edu	37	chr8	107752601	107752601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttccaccaagaacaattGgctatccatggactcttgtt	6	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107752601	T	T	107752601	3	4	10	1	0	0	0	0	1	0	0	0	11428	1348	47	2	2362	2	OXR1	8	107752601	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2495584	107752601	38611421	950	27228											
EBAG9	9166	broad.mit.edu	37	chr8	110576863	110576863	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaacatttgtatggatttaAgagtattttaagaagacata	8	3	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110576863	T	T	110576863	1	4	10	0	1	0	0	0	0	0	0	0	4919	87	3	5		5	EBAG9	8	110576863	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	2824262	110576863	35787159	951	27229											
CSMD3	114788	broad.mit.edu	37	chr8	113420536	113420536	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtgtttctagactacaGggtcacttaccttggtaaac	9	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113420536	A	A	113420536	1	1	10	0	1	0	0	0	0	0	0	0	3980	1015	35	4		4	CSMD3	8	113420536	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2843673	113420536	32943486	952	27230											
CSMD3	114788	broad.mit.edu	37	chr8	113668392	113668392	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattacttactttcataatGaatcttgaaaccattattgg	4	7	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113668392	T	T	113668392	3	4	10	1	0	0	0	0	1	0	0	0	3980	1290	45	3	8344	3	CSMD3	8	113668392	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	247856	113668392	32695630	953	27231											
CSMD3	114788	broad.mit.edu	37	chr8	114186213	114186213	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttattgttttagatgtatAaaattatatatgtagatatg	7	0	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114186213	G	G	114186213	1	3	10	0	1	0	0	0	0	0	0	0	3980	377	13	5		5	CSMD3	8	114186213	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	517821	114186213	32177809	954	27232											
EIF3H	8667	broad.mit.edu	37	chr8	117658955	117658955	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgaattccaacctcaGtttttatcattggcaacatt	5	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117658955	A	A	117658955	1	1	10	0	1	0	0	0	0	0	0	0	5060	1044	36	4		4	EIF3H	8	117658955	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3472742	117658955	28705067	955	27233											
TAF2	6873	broad.mit.edu	37	chr8	120800459	120800459	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatgttctgcacatgtatcCcacaacttaaagtataattt	5	9	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120800459	G	G	120800459	1	3	10	0	1	0	0	0	0	0	0	0	15643	638	22	4		4	TAF2	8	120800459	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3141504	120800459	25563563	956	27234											
TAF2	6873	broad.mit.edu	37	chr8	120803609	120803609	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctattttcaatcaatctcatCacaaggtgggctttacactg	6	10	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120803609	A	A	120803609	2	1	10	1	0	0	0	0	0	0	0	1	15643	813	29	3		3	TAF2	8	120803609	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	3150	120803609	25560413	957	27235											
DSCC1	79075	broad.mit.edu	37	chr8	120856088	120856088	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcagtggcgtgatctcagCtcatcgcaacctccacctcc	8	16	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120856088	T	T	120856088	1	4	10	0	1	0	0	0	0	0	0	0	4810	812	28	4		4	DSCC1	8	120856088	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	52479	120856088	25507934	958	27236											
DSCC1	79075	broad.mit.edu	37	chr8	120865274	120865274	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacttttataaatcagagtaCagaaaagagcacctcagtgt	8	7	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120865274	G	G	120865274	1	3	10	0	1	0	0	0	0	0	0	0	4810	493	17	4		4	DSCC1	8	120865274	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	9186	120865274	25498748	959	27237											
WDR67	93594	broad.mit.edu	37	chr8	124132407	124132407	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaccaactcatctgttttGaagttattgctactctcata	4	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124132407	C	C	124132407	3	2	10	1	0	0	0	0	1	0	0	0	17445	1291	45	4	1591	4	WDR67	8	124132407	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3267133	124132407	22231615	960	27238											
ATAD2	29028	broad.mit.edu	37	chr8	124381404	124381404	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgttgggctttctctGgtgacgaggttctaaaaaaa	10	5	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124381404	A	A	124381404	4	1	10	1	0	0	0	0	0	1	0	0	1075	1357	47	4	3313	4	ATAD2	8	124381404	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	248997	124381404	21982618	961	27239											
MTSS1	9788	broad.mit.edu	37	chr8	125603417	125603417	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaactgcctcagcttggcttCaatgcttctgtgcctcatgc	8	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125603417	A	A	125603417	4	1	10	1	0	0	0	0	0	1	0	0	10056	835	29	3	2043	3	MTSS1	8	125603417	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1222013	125603417	20760605	962	27240											
TMEM71	137835	broad.mit.edu	37	chr8	133771110	133771110	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactggtgttgacatcagttGagatattcggtacatcttgg	11	6	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133771110	C	C	133771110	3	2	10	1	0	0	0	0	1	0	0	0	16323	1299	45	4	907	4	TMEM71	8	133771110	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	8167693	133771110	12592912	963	27241											
TG	7038	broad.mit.edu	37	chr8	133931788	133931788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtaagttctgtggagtgCttctttgaaagaaaagccct	10	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133931788	A	A	133931788	1	1	10	0	1	0	0	0	0	0	0	0	15936	812	28	3		3	TG	8	133931788	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	160678	133931788	12432234	964	27242											
FAM135B	51059	broad.mit.edu	37	chr8	139164452	139164452	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctcccgctcatcctcctCaaaaggtaaagagctaatgg	7	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139164452	G	G	139164452	3	3	10	1	0	0	0	0	1	0	0	0	5495	835	29	4	1986	4	FAM135B	8	139164452	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5232664	139164452	7199570	965	27243											
FAM135B	51059	broad.mit.edu	37	chr8	139164698	139164698	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaagatctcttgatgacccCggatagcactgagagttcct	10	10	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139164698	G	G	139164698	3	3	10	1	0	0	0	0	1	0	0	0	5495	652	23	4	2232	4	FAM135B	8	139164698	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	246	139164698	7199324	966	27244											
FAM135B	51059	broad.mit.edu	37	chr8	139380314	139380314	+	Intron	DEL	A	-	-													agaaagaacctggcttttacAacaggaaaccaatctgacca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139380314	-	-	139380314	6	5	10	0	1	1	0	1	0	0	0	0	5495	145	5	0		0	FAM135B	8	139380314	Intron	DEL	A	TCGA-05-4397-01A-01D-1265-08	215616	139380314	6983708	967	27245											
COL22A1	169044	broad.mit.edu	37	chr8	139629159	139629159	+	Frame_Shift_Del	DEL	G	-	-													agtgaggcgcccacttacccGgggaccgggtgcaccagaat							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139629159	-	-	139629159	7	5	10	1	0	1	0	1	0	0	0	0	3713	1115	39	0	1060	0	COL22A1	8	139629159	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	248845	139629159	6734863	968	27246											
PTP4A3	11156	broad.mit.edu	37	chr8	142432293	142432293	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcaggtcgtgtccccaGccttctctgcagtcccttct	7	17	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142432293	T	T	142432293	1	4	10	0	1	0	0	0	0	0	0	0	12878	986	34	3		3	PTP4A3	8	142432293	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	2803134	142432293	3931729	969	27247											
LYNX1	66004	broad.mit.edu	37	chr8	143846019	143846019	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggcctggaggagggcaGccgtcagtcatggttgcaga	19	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143846019	T	T	143846019	1	4	10	0	1	0	0	0	0	0	0	0	9196	986	34	3		3	LYNX1	8	143846019	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	1413726	143846019	2518003	970	27248											
CYP11B2	1585	broad.mit.edu	37	chr8	143994886	143994886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctacagaagccatgtctgCagggtcagaccttgcacagg	12	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143994886	A	A	143994886	1	1	10	0	1	0	0	0	0	0	0	0	4179	725	25	3		3	CYP11B2	8	143994886	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	148867	143994886	2369136	971	27249											
GLI4	2738	broad.mit.edu	37	chr8	144358399	144358399	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggccaagccgcacaggtgcGaggcctgcggcaagagtttc	16	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144358399	C	C	144358399	3	2	10	1	0	0	0	0	1	0	0	0	6504	1059	37	4	566	4	GLI4	8	144358399	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	363513	144358399	2005623	972	27250											
TOP1MT	116447	broad.mit.edu	37	chr8	144406078	144406078	+	Intron	DEL	G	-	-													gaggttccaccccacacacaGgcccacgtcgccacactgca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144406078	-	-	144406078	6	5	10	0	1	1	0	1	0	0	0	0	16488	1015	35	0		0	TOP1MT	8	144406078	Intron	DEL	G	TCGA-05-4397-01A-01D-1265-08	47679	144406078	1957944	973	27251											
ZNF623	9831	broad.mit.edu	37	chr8	144733168	144733168	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acactggagagaaactctatGaatgtaacgagtgtgggaaa	12	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144733168	C	C	144733168	3	2	10	1	0	0	0	0	1	0	0	0	18174	1291	45	4	1128	4	ZNF623	8	144733168	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	327090	144733168	1630854	974	27252											
PLEC	5339	broad.mit.edu	37	chr8	144991960	144991961	+	Frame_Shift_Del	DEL	GC	-	-													ggtccttgtacccagtgacgGcgcgctcggccgacagcagc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144991961	-	-	144991960	7	5	10	1	0	1	0	1	0	0	0	0	12147	1203	42	0	1618	0	PLEC	8	144991960	Frame_Shift_Del	DEL	GC	TCGA-05-4397-01A-01D-1265-08	258792	144991960	1372062	975	27253											
OPLAH	26873	broad.mit.edu	37	chr8	145113186	145113186	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggccaccctcctgctggTaggtggtggctgagtagccc	15	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145113186	C	C	145113186	3	2	10	1	0	0	0	0	1	0	0	0	10970	1638	57	5	3047	5	OPLAH	8	145113186	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	121226	145113186	1250836	976	27254											
ZNF517	340385	broad.mit.edu	37	chr8	146029285	146029286	+	Intron	DNP	CT	TA	TA													aggctccccaaggagcccctCtctgcttcctgttgggcacc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	146029286	TA	TA	146029285	1	4	10	0	1	0	0	0	0	0	0	0	18088	928	32	4		4	ZNF517	8	146029285	Intron	DNP	CT	TCGA-05-4397-01A-01D-1265-08	916099	146029285	334737	977	27255											
CBWD1	55871	broad.mit.edu	37	chr9	146290	146290	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcaaatggtgtaagatttGaatcacagttgaatcaagat	11	4	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146290	T	T	146290	1	4	10	0	1	0	0	0	0	0	0	0	2738	1305	45	3		3	CBWD1	9	146290	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08		146290	141067141	978	27256											
DOCK8	81704	broad.mit.edu	37	chr9	390698	390698	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttgaaatctaataatctCtcacccctcccatccttctt	1	15	5	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	390698	G	G	390698	1	3	10	0	1	0	0	0	0	0	0	0	4733	928	32	4		4	DOCK8	9	390698	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	244408	390698	140822733	979	27257											
DMRT3	58524	broad.mit.edu	37	chr9	990207	990207	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggaagggggatacgctgtCcagaaaaacggaggcaaccc	15	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	990207	T	T	990207	2	4	10	1	0	0	0	0	0	0	0	1	4627	842	30	4		4	DMRT3	9	990207	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	599509	990207	140223224	980	27258											
KCNV2	169522	broad.mit.edu	37	chr9	2717919	2717919	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatcgaggaagacgaagaCggcgaggaggaggaccagtg	17	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2717919	T	T	2717919	2	4	10	1	0	0	0	0	0	0	0	1	8165	535	19	4		4	KCNV2	9	2717919	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1727712	2717919	138495512	981	27259											
GLDC	2731	broad.mit.edu	37	chr9	6554786	6554786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgacagattcccacctacCacaaaggcaagggccaaaag	10	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6554786	A	A	6554786	1	1	10	0	1	0	0	0	0	0	0	0	6497	609	21	2		2	GLDC	9	6554786	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3836867	6554786	134658645	982	27260											
PTPRD	5789	broad.mit.edu	37	chr9	8521381	8521381	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattcagttctagcacatttCttcctattggcatatcatct	4	11	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8521381	G	G	8521381	3	3	10	1	0	0	0	0	1	0	0	0	12907	913	32	4	5057	4	PTPRD	9	8521381	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1966595	8521381	132692050	983	27261											
PTPRD	5789	broad.mit.edu	37	chr9	8748051	8748051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcctgctagcccatgctcCgatgttaacgacattgaagg	11	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8748051	T	T	8748051	1	4	10	0	1	0	0	0	0	0	0	0	12907	667	23	4		4	PTPRD	9	8748051	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	226670	8748051	132465380	984	27262											
FREM1	158326	broad.mit.edu	37	chr9	14859625	14859625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatttcttgctctactcCcagcctctctgttcttttcc	3	15	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14859625	A	A	14859625	1	1	10	0	1	0	0	0	0	0	0	0	6104	638	22	2		2	FREM1	9	14859625	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	6111574	14859625	126353806	985	27263											
KIAA1797	54914	broad.mit.edu	37	chr9	20822903	20822904	+	Intron	DNP	GG	TA	TA													acaagagtatagaaaatgatGgatgctttttgtttaggcaa							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	20822904	TA	TA	20822903	1	4	10	0	1	0	0	0	0	0	0	0	8328	1363	47	2		2	KIAA1797	9	20822903	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	5963278	20822903	120390528	986	27264											
IFNA4	3441	broad.mit.edu	37	chr9	21187458	21187458	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgtgggtctgaggcagatCacagcccagagaacagatgg	15	9	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21187458	A	A	21187458	3	1	10	1	0	0	0	0	1	0	0	0	7609	826	29	3	500	3	IFNA4	9	21187458	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	364555	21187458	120025973	987	27265											
IFNA7	3444	broad.mit.edu	37	chr9	21201973	21201973	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactggtggccatcaaactcCtcctctgggaatctgaattc	8	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21201973	G	G	21201973	3	3	10	1	0	0	0	0	1	0	0	0	7612	680	24	4	381	4	IFNA7	9	21201973	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	14515	21201973	120011458	988	27266											
MOBKL2B	79817	broad.mit.edu	37	chr9	27358939	27358939	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggctaacagctagccatCaatgagcattttccagggat	9	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27358939	T	T	27358939	1	4	10	0	1	0	0	0	0	0	0	0	9779	841	29	4		4	MOBKL2B	9	27358939	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	6156966	27358939	113854492	989	27267											
B4GALT1	2683	broad.mit.edu	37	chr9	33113962	33113962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagactgttgctccatcCaccatcacccttgctgttct	6	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33113962	A	A	33113962	1	1	10	0	1	0	0	0	0	0	0	0	1275	609	21	2		2	B4GALT1	9	33113962	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	5755023	33113962	108099469	990	27268											
NFX1	4799	broad.mit.edu	37	chr9	33367698	33367698	+	Intron	DEL	A	-	-													gaattgtcctgagctgcaccAgccattggtggcctcctcag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33367698	-	-	33367698	6	5	10	0	1	1	0	1	0	0	0	0	10482	203	7	0		0	NFX1	9	33367698	Intron	DEL	A	TCGA-05-4397-01A-01D-1265-08	253736	33367698	107845733	991	27269											
C9orf128	392307	broad.mit.edu	37	chr9	35825139	35825139	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttccaaaaggggaagctaTctgctgaatgttcaggttcc	10	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35825139	C	C	35825139	1	2	10	0	1	0	0	0	0	0	0	0	2481	1450	50	5		5	C9orf128	9	35825139	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2457441	35825139	105388292	992	27270											
MELK	9833	broad.mit.edu	37	chr9	36632977	36632977	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccattttaaagtctttgaCagcatttttgtgatgataaa	8	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36632977	G	G	36632977	1	3	10	0	1	0	0	0	0	0	0	0	9563	493	17	4		4	MELK	9	36632977	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	807838	36632977	104580454	993	27271											
ALDH1B1	219	broad.mit.edu	37	chr9	38396249	38396249	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccatggatggccagcatttCtgcttcacccggcatgagcc	10	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38396249	G	G	38396249	3	3	10	1	0	0	0	0	1	0	0	0	493	912	32	4	506	4	ALDH1B1	9	38396249	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1763272	38396249	102817182	994	27272											
SMC5	23137	broad.mit.edu	37	chr9	72938274	72938274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattgattgatcggttatgGgccaggcactatatatctga	10	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72938274	T	T	72938274	1	4	10	0	1	0	0	0	0	0	0	0	14900	1247	43	2		2	SMC5	9	72938274	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	34542025	72938274	68275157	995	27273											
TMC1	117531	broad.mit.edu	37	chr9	75366861	75366861	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgacatttagcctcatcAtgttgccagaggtgagatct	9	10	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75366861	G	G	75366861	3	3	10	1	0	0	0	0	1	0	0	0	16107	217	8	5	657	5	TMC1	9	75366861	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	2428587	75366861	65846570	996	27274											
TMC1	117531	broad.mit.edu	37	chr9	75420388	75420388	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcatgttttgtgaggtttTgcaattattgctggtgctgg	15	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75420388	C	C	75420388	3	2	10	1	0	0	0	0	1	0	0	0	16107	1812	63	5	1711	5	TMC1	9	75420388	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	53527	75420388	65793043	997	27275											
FOXB2	442425	broad.mit.edu	37	chr9	79635143	79635143	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctactgctccgcagccgccTccgcacctcccgtcacagcc	7	23	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79635143	C	C	79635143	2	2	10	1	0	0	0	0	0	0	0	1	6051	1538	54	5		5	FOXB2	9	79635143	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	4214755	79635143	61578288	998	27276											
VPS13A	23230	broad.mit.edu	37	chr9	79928819	79928819	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattttactatacctgtttAataattctattaaatctatt	1	6	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79928819	C	C	79928819	1	2	10	0	1	0	0	0	0	0	0	0	17316	377	13	5		5	VPS13A	9	79928819	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	293676	79928819	61284612	999	27277											
FLJ46321	389763	broad.mit.edu	37	chr9	84607206	84607206	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgtggagtgtgttttcaTagaccccagaacgaggcacg	12	9	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84607206	A	A	84607206	3	1	10	1	0	0	0	0	1	0	0	0	5990	1403	49	5	1835	5	FLJ46321	9	84607206	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	4678387	84607206	56606225	1000	27278											
SLC28A3	64078	broad.mit.edu	37	chr9	86894169	86894169	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tataaagaaattataatcaaGaatacaatacctgctcaaca	3	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86894169	C	C	86894169	1	2	10	0	1	0	0	0	0	0	0	0	14647	957	33	4		4	SLC28A3	9	86894169	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2286963	86894169	54319262	1001	27279											
SYK	6850	broad.mit.edu	37	chr9	93637067	93637067	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accgaaagctgctgacgctgGaagacaaagaactgggctct	12	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93637067	T	T	93637067	4	4	10	1	0	0	0	0	0	1	0	0	15557	1175	41	3	1147	3	SYK	9	93637067	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	6742898	93637067	47576364	1002	27280											
IARS	3376	broad.mit.edu	37	chr9	95003138	95003138	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatggaatttactcttacCttgttcactgccatttgcac	5	11	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95003138	T	T	95003138	3	4	10	1	0	0	0	0	1	0	0	0	7543	695	24	4	525	4	IARS	9	95003138	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1366071	95003138	46210293	1003	27281											
IARS	3376	broad.mit.edu	37	chr9	95042936	95042936	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttttcaaataattctattCttcatgcaaaaagaaaggta	5	5	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95042936	G	G	95042936	1	3	10	0	1	0	0	0	0	0	0	0	7543	928	32	4		4	IARS	9	95042936	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	39798	95042936	46170495	1004	27282											
WNK2	65268	broad.mit.edu	37	chr9	95992262	95992262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggctggtgcctgtgggaGgctgtctcctctttcctctc	12	14	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95992262	T	T	95992262	1	4	10	0	1	0	0	0	0	0	0	0	17505	1015	35	2		2	WNK2	9	95992262	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	949326	95992262	45221169	1005	27283											
C9orf156	51531	broad.mit.edu	37	chr9	100673008	100673008	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcctcactgcacttactcaTaattctctcacacagaccta	3	16	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100673008	C	C	100673008	1	2	10	0	1	0	0	0	0	0	0	0	2491	1421	49	5		5	C9orf156	9	100673008	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	4680746	100673008	40540423	1006	27284											
CORO2A	7464	broad.mit.edu	37	chr9	100893413	100893413	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtggtgctcccggagataaGaattgctgccatggtgctct	13	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100893413	A	A	100893413	1	1	10	0	1	0	0	0	0	0	0	0	3788	957	33	4		4	CORO2A	9	100893413	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	220405	100893413	40320018	1007	27285											
COL15A1	1306	broad.mit.edu	37	chr9	101749448	101749448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttcgtggttgagactGcaggctgtacatcctcattc	11	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101749448	T	T	101749448	1	4	10	0	1	0	0	0	0	0	0	0	3704	1334	46	3		3	COL15A1	9	101749448	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	856035	101749448	39463983	1008	27286											
CYLC2	1539	broad.mit.edu	37	chr9	105767808	105767808	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaagaaggacgccacgaaaGatgccaagaaagttgccaag	11	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105767808	T	T	105767808	3	4	10	1	0	0	0	0	1	0	0	0	4175	942	33	3	913	3	CYLC2	9	105767808	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4018360	105767808	35445623	1009	27287											
ABCA1	19	broad.mit.edu	37	chr9	107618338	107618338	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttggcacagttaactgcCcatgtgcaatgtcatcacat	7	11	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107618338	G	G	107618338	1	3	10	0	1	0	0	0	0	0	0	0	28	638	22	4		4	ABCA1	9	107618338	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1850530	107618338	33595093	1010	27288											
IKBKAP	8518	broad.mit.edu	37	chr9	111640762	111640762	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcaggaatgtgtgcagaCatgacccttcctgctaaaag	10	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111640762	T	T	111640762	1	4	10	0	1	0	0	0	0	0	0	0	7680	493	17	4		4	IKBKAP	9	111640762	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4022424	111640762	29572669	1011	27289											
KIAA1958	158405	broad.mit.edu	37	chr9	115337153	115337153	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgccatcagcacggagctaGacccacacggtatgtctgca	10	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115337153	A	A	115337153	3	1	10	1	0	0	0	0	1	0	0	0	8334	942	33	4	795	4	KIAA1958	9	115337153	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3696391	115337153	25876278	1012	27290											
SLC31A2	1318	broad.mit.edu	37	chr9	115924867	115924867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgagttttttctgggggcGggggtgggaggggcagaaag	21	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115924867	T	T	115924867	1	4	10	0	1	0	0	0	0	0	0	0	14678	1131	39	1		1	SLC31A2	9	115924867	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	587714	115924867	25288564	1013	27291											
ORM1	5004	broad.mit.edu	37	chr9	117086000	117086000	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacgaggagtacaataagTcggttcaggagatccaagca	12	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117086000	G	G	117086000	3	3	10	1	0	0	0	0	1	0	0	0	11361	1667	58	5	178	5	ORM1	9	117086000	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1161133	117086000	24127431	1014	27292											
ASTN2	23245	broad.mit.edu	37	chr9	119187757	119187757	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggtctcctccaggggtcCatggcaggaagaaagcagag	14	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119187757	T	T	119187757	1	4	10	0	1	0	0	0	0	0	0	0	1069	609	21	4		4	ASTN2	9	119187757	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	2101757	119187757	22025674	1015	27293											
ASTN2	23245	broad.mit.edu	37	chr9	119737521	119737521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcttccgtgacgagcacatCggtcttgcagctggccaggg	14	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119737521	A	A	119737521	3	1	10	1	0	0	0	0	1	0	0	0	1069	884	31	3	2452	3	ASTN2	9	119737521	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	549764	119737521	21475910	1016	27294											
DBC1	1620	broad.mit.edu	37	chr9	121929385	121929385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtttggctgtcatctGgtccgactgtttgaggatct	13	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121929385	T	T	121929385	3	4	10	1	0	0	0	0	1	0	0	0	4280	1357	47	2	26	2	DBC1	9	121929385	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2191864	121929385	19284046	1017	27295											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123201727	123201727	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagattatggatctcactGaaaagttgcatgttcaaatt	8	6	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123201727	A	A	123201727	2	1	10	1	0	0	0	0	0	0	0	1	3176	1281	45	4		4	CDK5RAP2	9	123201727	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1272342	123201727	18011704	1018	27296											
GSN	2934	broad.mit.edu	37	chr9	124072923	124072923	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatatctgcttccctgggcCttctcccctgggctaatgct	8	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124072923	T	T	124072923	1	4	10	0	1	0	0	0	0	0	0	0	6891	696	24	4		4	GSN	9	124072923	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	871196	124072923	17140508	1019	27297											
STOM	2040	broad.mit.edu	37	chr9	124103597	124103597	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagtgtctgcaggtatcgGagctgaagggctgcaggaga	17	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124103597	T	T	124103597	2	4	10	1	0	0	0	0	0	0	0	1	15430	1161	41	3		3	STOM	9	124103597	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	30674	124103597	17109834	1020	27298											
OR1Q1	158131	broad.mit.edu	37	chr9	125377019	125377019	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcttatggcaacagatGgacaacagcaactggaccag	10	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125377019	A	A	125377019	3	1	10	1	0	0	0	0	1	0	0	0	11065	1348	47	4	5	4	OR1Q1	9	125377019	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1273422	125377019	15836412	1021	27299											
OR1Q1	158131	broad.mit.edu	37	chr9	125377246	125377246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgcttcacctccaccaCggtccccaagatgctgcaga	7	17	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125377246	A	A	125377246	3	1	10	1	0	0	0	0	1	0	0	0	11065	536	19	3	232	3	OR1Q1	9	125377246	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	227	125377246	15836185	1022	27300											
CRB2	286204	broad.mit.edu	37	chr9	126132933	126132933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagcgaccctggagctacGgctctggcatgagggctgcc	14	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126132933	T	T	126132933	3	4	10	1	0	0	0	0	1	0	0	0	3881	1116	39	1	1627	1	CRB2	9	126132933	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	755687	126132933	15080498	1023	27301											
PSMB7	5695	broad.mit.edu	37	chr9	127177791	127177791	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggcaacgggggctgaaGgggcggggcaaacgccgcac	19	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127177791	T	T	127177791	1	4	10	0	1	0	0	0	0	0	0	0	12788	1015	35	2		2	PSMB7	9	127177791	5'Flank	SNP	G	TCGA-05-4397-01A-01D-1265-08	1044858	127177791	14035640	1024	27302											
OLFML2A	169611	broad.mit.edu	37	chr9	127563570	127563570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagctgtgactttgtgaGtgcttgggacatagggcctg	16	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127563570	T	T	127563570	1	4	10	0	1	0	0	0	0	0	0	0	10952	1044	36	3		3	OLFML2A	9	127563570	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	385779	127563570	13649861	1025	27303											
MAPKAP1	79109	broad.mit.edu	37	chr9	128347858	128347858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcggctcccgtccttcgCttgtatactgccagcagatg	10	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128347858	A	A	128347858	3	1	10	1	0	0	0	0	1	0	0	0	9380	797	28	3	971	3	MAPKAP1	9	128347858	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	784288	128347858	12865573	1026	27304											
ST6GALNAC4	27090	broad.mit.edu	37	chr9	130676970	130676970	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgctatatccactgaagtGcaggggtcccggcacagtgg	13	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130676970	C	C	130676970	3	2	10	1	0	0	0	0	1	0	0	0	15344	1319	46	4	761	4	ST6GALNAC4	9	130676970	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2329112	130676970	10536461	1027	27305											
DNM1	1759	broad.mit.edu	37	chr9	131009749	131009749	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgagggctggcgtgtAccctgagcgtgttggggtga	17	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131009749	T	T	131009749	3	4	10	1	0	0	0	0	1	0	0	0	4710	391	14	5	1938	5	DNM1	9	131009749	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	332779	131009749	10203682	1028	27306											
GOLGA2	2801	broad.mit.edu	37	chr9	131019808	131019808	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctccagcagcttcacctgGagggaggggtgctaagctgc	15	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131019808	C	C	131019808	1	2	10	0	1	0	0	0	0	0	0	0	6616	1189	41	4		4	GOLGA2	9	131019808	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	10059	131019808	10193623	1029	27307											
SH3GLB2	56904	broad.mit.edu	37	chr9	131774573	131774573	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtctcctgaaagtcaggcAccgtctggcggggaacagag	14	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131774573	G	G	131774573	3	3	10	1	0	0	0	0	1	0	0	0	14367	159	6	5	645	5	SH3GLB2	9	131774573	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	754765	131774573	9438858	1030	27308											
USP20	10868	broad.mit.edu	37	chr9	132618664	132618664	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacccttgtggccatcagGggtgtagagctgcttccacc	12	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132618664	A	A	132618664	1	1	10	0	1	0	0	0	0	0	0	0	17178	1247	43	4		4	USP20	9	132618664	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	844091	132618664	8594767	1031	27309											
AIF1L	83543	broad.mit.edu	37	chr9	133990102	133990102	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggggcatggggcagtccgGaaggctggtgaatatgttgc	19	6	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133990102	T	T	133990102	1	4	10	0	1	0	0	0	0	0	0	0	425	1189	41	3		3	AIF1L	9	133990102	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1371438	133990102	7223329	1032	27310											
NUP214	8021	broad.mit.edu	37	chr9	134008335	134008335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttggggatgagtttgggCttcttgggtcattgtacctg	14	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134008335	A	A	134008335	1	1	10	0	1	0	0	0	0	0	0	0	10857	812	28	3		3	NUP214	9	134008335	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	18233	134008335	7205096	1033	27311											
POMT1	10585	broad.mit.edu	37	chr9	134386704	134386704	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctgtctctcactcatcaAccttctgcttctgtctcagg	5	14	8	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134386704	G	G	134386704	1	3	10	0	1	0	0	0	0	0	0	0	12340	58	2	5		5	POMT1	9	134386704	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	378369	134386704	6826727	1034	27312											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136402004	136402004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctcagatggactggcttGgagggagccgtgtgggcacg	17	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136402004	T	T	136402004	1	4	10	0	1	0	0	0	0	0	0	0	275	1363	47	2		2	ADAMTSL2	9	136402004	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2015300	136402004	4811427	1035	27313											
GLT6D1	360203	broad.mit.edu	37	chr9	138515896	138515897	+	3'UTR	DNP	GG	TT	TT													ccttgacgtattggatctgtGgaggaggagaaaatgcaaga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	138515897	TT	TT	138515896	1	4	10	0	1	0	0	0	0	0	0	0	6532	1363	47	2		2	GLT6D1	9	138515896	3'UTR	DNP	GG	TCGA-05-4397-01A-01D-1265-08	2113892	138515896	2697535	1036	27314											
CAMSAP1	157922	broad.mit.edu	37	chr9	138713293	138713293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctccacgaagtggactgGtgccttcactttgtggtcct	12	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138713293	A	A	138713293	3	1	10	1	0	0	0	0	1	0	0	0	2637	1261	44	4	1622	4	CAMSAP1	9	138713293	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	197397	138713293	2500138	1037	27315											
SNAPC4	6621	broad.mit.edu	37	chr9	139275905	139275905	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgggcacagggggatggGtggaaagcagccccagctcc	16	12	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139275905	A	A	139275905	1	1	10	0	1	0	0	0	0	0	0	0	14951	1276	44	4		4	SNAPC4	9	139275905	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	562612	139275905	1937526	1038	27316											
SEC16A	9919	broad.mit.edu	37	chr9	139368707	139368707	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggacaccagagacacgcTagaggactgaggaggccgag	15	10	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139368707	C	C	139368707	3	2	10	1	0	0	0	0	1	0	0	0	14099	1522	53	5	3832	5	SEC16A	9	139368707	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	92802	139368707	1844724	1039	27317											
CACNA1B	774	broad.mit.edu	37	chr9	141007042	141007042	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtggaggtgagggtgAgggatgaagggcaggccacc	22	6	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141007042	T	T	141007042	1	4	10	0	1	0	0	0	0	0	0	0	2565	319	11	5		5	CACNA1B	9	141007042	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1638335	141007042	206389	1040	27318											
LARP4B	23185	broad.mit.edu	37	chr10	858953	858961	+	In_Frame_Del	DEL	CCTCTGGTC	-	-													ggccggccccccgccggccgCctctggtctctgggggctcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	858961	-	-	858953	7	5	10	1	0	1	0	1	0	0	0	0	8703	738	26	0	90	0	LARP4B	10	858953	In_Frame_Del	DEL	CCTCTGGTC	TCGA-05-4397-01A-01D-1265-08		858953	134675794	1041	27319											
ADARB2	105	broad.mit.edu	37	chr10	1279783	1279783	+	Frame_Shift_Del	DEL	G	-	-													tcgctctgagtcctcgcgccGcttgctagggtcacaaagag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1279783	-	-	1279783	7	5	10	1	0	1	0	1	0	0	0	0	283	1086	38	0	873	0	ADARB2	10	1279783	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	420830	1279783	134254964	1042	27320											
FBXO18	84893	broad.mit.edu	37	chr10	5966502	5966502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttggtttttaccttcccCctaagaggaggaacagatgg	11	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5966502	T	T	5966502	1	4	10	0	1	0	0	0	0	0	0	0	5788	638	22	4		4	FBXO18	10	5966502	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4686719	5966502	129568245	1043	27321											
OPTN	10133	broad.mit.edu	37	chr10	13154609	13154609	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actccagcggctcctcagaaGattcctttgttgaaattagg	9	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13154609	T	T	13154609	3	4	10	1	0	0	0	0	1	0	0	0	10983	942	33	3	536	3	OPTN	10	13154609	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	7188107	13154609	122380138	1044	27322											
FAM171A1	221061	broad.mit.edu	37	chr10	15325773	15325773	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatttttttgtagagatGcagtctcactatgttgccca	7	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15325773	A	A	15325773	1	1	10	0	1	0	0	0	0	0	0	0	5535	1334	46	4		4	FAM171A1	10	15325773	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2171164	15325773	120208974	1045	27323											
ITGA8	8516	broad.mit.edu	37	chr10	15600298	15600299	+	Intron	DNP	GG	TT	TT													ggcaatttttttttctcagtGgaatatgattcacatgagga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15600299	TT	TT	15600298	1	4	10	0	1	0	0	0	0	0	0	0	7952	1363	47	2		2	ITGA8	10	15600298	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	274525	15600298	119934449	1046	27324											
NEBL	10529	broad.mit.edu	37	chr10	21074756	21074756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgccgtacatccagccatCgtcaataggctgcacgttga	10	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21074756	A	A	21074756	3	1	10	1	0	0	0	0	1	0	0	0	10398	884	31	3	83	3	NEBL	10	21074756	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5474458	21074756	114459991	1047	27325											
NEBL	10529	broad.mit.edu	37	chr10	21435525	21435525	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatcttaattacagaagctCttagcaaccgttgcttagta	6	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21435525	A	A	21435525	1	1	10	0	1	0	0	0	0	0	0	0	10398	928	32	3		3	NEBL	10	21435525	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	360769	21435525	114099222	1048	27326											
SPAG6	9576	broad.mit.edu	37	chr10	22675676	22675676	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttaattacttttcttggaCccacagaactgtcacaagct	5	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22675676	T	T	22675676	1	4	10	0	1	0	0	0	0	0	0	0	15098	522	18	4		4	SPAG6	10	22675676	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1240151	22675676	112859071	1049	27327											
KIAA1217	56243	broad.mit.edu	37	chr10	24508891	24508891	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcgctctctaatgaacatcGaggaaagcaaacttactttc	6	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24508891	T	T	24508891	1	4	10	0	1	0	0	0	0	0	0	0	8286	1073	37	3		3	KIAA1217	10	24508891	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1833215	24508891	111025856	1050	27328											
MYO3A	53904	broad.mit.edu	37	chr10	26355846	26355846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatcatatgtatctaaaaCttttttccactatgagcagt	5	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26355846	A	A	26355846	1	1	10	0	1	0	0	0	0	0	0	0	10170	580	20	3		3	MYO3A	10	26355846	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1846955	26355846	109178901	1051	27329											
APBB1IP	54518	broad.mit.edu	37	chr10	26785226	26785226	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgatggggggatcttttTtcacagagtttaggagttga	13	4	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26785226	C	C	26785226	1	2	10	0	1	0	0	0	0	0	0	0	762	1856	64	5		5	APBB1IP	10	26785226	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	429380	26785226	108749521	1052	27330											
WAC	51322	broad.mit.edu	37	chr10	28905206	28905206	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgcccgatccacgtgttCattaacgcctgcactagcag	8	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28905206	G	G	28905206	4	3	10	1	0	0	0	0	0	1	0	0	17374	838	29	4	1707	4	WAC	10	28905206	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2119980	28905206	106629541	1053	27331											
ZEB1	6935	broad.mit.edu	37	chr10	31791485	31791485	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccctctttaaaggattcTtgtttctaccattctactat	3	10	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31791485	C	C	31791485	1	2	10	0	1	0	0	0	0	0	0	0	17749	1624	56	5		5	ZEB1	10	31791485	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2886279	31791485	103743262	1054	27332											
ZEB1	6935	broad.mit.edu	37	chr10	31809520	31809520	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatgtacttaaagtggcGgtagatggtaatgtaataag	12	3	0	2	rs35238902	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31809520	T	T	31809520	2	4	10	1	0	0	0	0	0	0	0	1	17749	1103	39	1		1	ZEB1	10	31809520	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	18035	31809520	103725227	1055	27333											
ZNF37A	7587	broad.mit.edu	37	chr10	38407837	38407837	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tataatgataatgagaacacCtttgccctgaagtcagttct	7	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38407837	G	G	38407837	1	3	10	0	1	0	0	0	0	0	0	0	17998	696	24	4		4	ZNF37A	10	38407837	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	6598317	38407837	97126910	1056	27334											
RET	5979	broad.mit.edu	37	chr10	43611893	43611893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagacaggcagcgttgcCgctggctcagatgacagccg	15	12	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43611893	A	A	43611893	1	1	10	0	1	0	0	0	0	0	0	0	13343	667	23	1		1	RET	10	43611893	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	5204056	43611893	91922854	1057	27335											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43650780	43650780	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtattatcaagccctcctAcaggaacaagaagaacatta	7	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43650780	T	T	43650780	2	4	10	1	0	0	0	0	0	0	0	1	3973	378	14	5		5	CSGALNACT2	10	43650780	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	38887	43650780	91883967	1058	27336											
CXCL12	6387	broad.mit.edu	37	chr10	44874113	44874113	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctttctccaggtactcctGaatccactttagcttcgggt	8	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44874113	A	A	44874113	4	1	10	1	0	0	0	0	0	1	0	0	4113	1299	45	4	314	4	CXCL12	10	44874113	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1223333	44874113	90660634	1059	27337											
ALOX5	240	broad.mit.edu	37	chr10	45939045	45939045	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcggcagcgctggcccctCcgccacccctccggggtgtc	13	19	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45939045	T	T	45939045	1	4	10	0	1	0	0	0	0	0	0	0	540	870	30	4		4	ALOX5	10	45939045	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1064932	45939045	89595702	1060	27338											
FAM21C	253725	broad.mit.edu	37	chr10	46248088	46248088	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccgacgaggacttctcGccatttggctctggaggtgg	14	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46248088	C	C	46248088	2	2	10	1	0	0	0	0	0	0	0	1	5589	1074	38	4		4	FAM21C	10	46248088	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	309043	46248088	89286659	1061	27339											
ZNF488	118738	broad.mit.edu	37	chr10	48371464	48371464	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgacccacattctcagaAgcggagagaagaggcccttg	12	12	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48371464	C	C	48371464	3	2	10	1	0	0	0	0	1	0	0	0	18067	72	3	5	934	5	ZNF488	10	48371464	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	2123376	48371464	87163283	1062	27340											
PTPN20B	26095	broad.mit.edu	37	chr10	48771317	48771317	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaactatttttagcttacatGgaagaatatctcggtatcta	6	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48771317	C	C	48771317	3	2	10	1	0	0	0	0	1	0	0	0	12893	1348	47	4	2015	4	PTPN20B	10	48771317	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	399853	48771317	86763430	1063	27341											
ERCC6	2074	broad.mit.edu	37	chr10	50690785	50690785	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgatggggacggagaacTgctccataaacacaggcaac	13	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50690785	A	A	50690785	3	1	10	1	0	0	0	0	1	0	0	0	5259	1580	55	5	2412	5	ERCC6	10	50690785	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1919468	50690785	84843962	1064	27342											
CHAT	1103	broad.mit.edu	37	chr10	50824285	50824285	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagggtggtcagctggccTtgggtgacaacagactcatg	14	11	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50824285	G	G	50824285	1	3	10	0	1	0	0	0	0	0	0	0	3344	1624	56	5		5	CHAT	10	50824285	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	133500	50824285	84710462	1065	27343											
CHAT	1103	broad.mit.edu	37	chr10	50830116	50830116	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccaggccctgggaggaaGggctcaggcctcccttctcc	13	15	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50830116	A	A	50830116	1	1	10	0	1	0	0	0	0	0	0	0	3344	1015	35	4		4	CHAT	10	50830116	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	5831	50830116	84704631	1066	27344											
CHAT	1103	broad.mit.edu	37	chr10	50857656	50857656	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggaaattcaaggccacttAgcctcctcggcagaaaaact	8	13	1	1	rs151031033		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50857656	T	T	50857656	3	4	10	1	0	0	0	0	1	0	0	0	3344	417	15	5	1567	5	CHAT	10	50857656	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	27540	50857656	84677091	1067	27345											
SGMS1	259230	broad.mit.edu	37	chr10	52066816	52066816	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattgaaagataataggatTagggaggtgtttattttatg	11	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52066816	A	A	52066816	1	1	10	0	1	0	0	0	0	0	0	0	14327	1769	61	5		5	SGMS1	10	52066816	3'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	1209160	52066816	83467931	1068	27346											
PRKG1	5592	broad.mit.edu	37	chr10	53921601	53921601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgactaggttgccattGctactattttgtagaagatt	8	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53921601	T	T	53921601	1	4	10	0	1	0	0	0	0	0	0	0	12628	1334	46	3		3	PRKG1	10	53921601	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1854785	53921601	81613146	1069	27347											
ZWINT	11130	broad.mit.edu	37	chr10	58120979	58120979	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagggctgcagcttccgcctCtgtctccgctgcctccatct	9	17	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58120979	T	T	58120979	3	4	10	1	0	0	0	0	1	0	0	0	18378	922	32	4	846	4	ZWINT	10	58120979	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	4199378	58120979	77413768	1070	27348											
SLC16A9	220963	broad.mit.edu	37	chr10	61444122	61444122	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaagagaatcttatttaGagtgtggtagggcacagcgc	13	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61444122	T	T	61444122	1	4	10	0	1	0	0	0	0	0	0	0	14528	957	33	3		3	SLC16A9	10	61444122	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3323143	61444122	74090625	1071	27349											
ANK3	288	broad.mit.edu	37	chr10	62023774	62023774	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactgccaatggtgtgaagCcatcctgcaaataaatggat	9	10	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62023774	G	G	62023774	3	3	10	1	0	0	0	0	1	0	0	0	622	739	26	4	13100	4	ANK3	10	62023774	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	579652	62023774	73510973	1072	27350											
JMJD1C	221037	broad.mit.edu	37	chr10	64968029	64968029	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataaatgaagtcagagtttGaggattagctgctgccgctg	12	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64968029	T	T	64968029	3	4	10	1	0	0	0	0	1	0	0	0	8020	1299	45	3	4290	3	JMJD1C	10	64968029	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2944255	64968029	70566718	1073	27351											
HERC4	26091	broad.mit.edu	37	chr10	69699482	69699482	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactattttacttatggataTatatatatatatatacttct	3	4	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69699482	C	C	69699482	1	2	10	0	1	0	0	0	0	0	0	0	7127	1421	49	5		5	HERC4	10	69699482	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	4731453	69699482	65835265	1074	27352											
HERC4	26091	broad.mit.edu	37	chr10	69793920	69793920	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caattggccatatttattctGtccccaacagaagacttcac	5	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69793920	A	A	69793920	4	1	10	1	0	0	0	0	0	1	0	0	7127	1386	48	4	2770	4	HERC4	10	69793920	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	94438	69793920	65740827	1075	27353											
NDST2	8509	broad.mit.edu	37	chr10	75563830	75563830	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtgggagggaagccagctCaacagcataagcttgaagga	14	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75563830	G	G	75563830	1	3	10	0	1	0	0	0	0	0	0	0	10351	841	29	4		4	NDST2	10	75563830	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	5769910	75563830	59970917	1076	27354											
ANKRD1	27063	broad.mit.edu	37	chr10	92675309	92675309	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagtacttacacagttcttGatgttgagatccgcgccata	8	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92675309	C	C	92675309	3	2	10	1	0	0	0	0	1	0	0	0	637	1280	45	4	127	4	ANKRD1	10	92675309	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	17111479	92675309	42859438	1077	27355											
DNTT	1791	broad.mit.edu	37	chr10	98095772	98095772	+	Intron	DEL	C	-	-													ggggctactttgatcctcatCcccaaggctggcccccgagc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98095772	-	-	98095772	6	5	10	0	1	1	0	1	0	0	0	0	4720	870	30	0		0	DNTT	10	98095772	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	5420463	98095772	37438975	1078	27356											
RRP12	23223	broad.mit.edu	37	chr10	99126871	99126871	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgcatgtcatctgaaaGcttcccaatggcttccatct	7	15	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99126871	C	C	99126871	3	2	10	1	0	0	0	0	1	0	0	0	13797	971	34	4	955	4	RRP12	10	99126871	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1031099	99126871	36407876	1079	27357											
PGAM1	5223	broad.mit.edu	37	chr10	99192100	99192100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgtggctgatgatggtGgatgttttcaggtctctctg	14	6	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99192100	A	A	99192100	1	1	10	0	1	0	0	0	0	0	0	0	11868	1363	47	4		4	PGAM1	10	99192100	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	65229	99192100	36342647	1080	27358											
SEC31B	25956	broad.mit.edu	37	chr10	102255201	102255201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttagagtggagggtagCtcccacaacaatccggggga	13	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102255201	A	A	102255201	3	1	10	1	0	0	0	0	1	0	0	0	14112	797	28	3	1158	3	SEC31B	10	102255201	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3063101	102255201	33279546	1081	27359											
PAX2	5076	broad.mit.edu	37	chr10	102541203	102541203	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccggtttcggcctggcctcGcagctgctctgctgtgagat	13	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102541203	C	C	102541203	1	2	10	0	1	0	0	0	0	0	0	0	11573	1102	38	4		4	PAX2	10	102541203	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	286002	102541203	32993544	1082	27360											
C10orf76	79591	broad.mit.edu	37	chr10	103766493	103766493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattctggaccttataattTtttttttttgagacagcatc	6	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103766493	A	A	103766493	1	1	10	0	1	0	0	0	0	0	0	0	1627	1856	64	5		5	C10orf76	10	103766493	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1225290	103766493	31768254	1083	27361											
CYP17A1	1586	broad.mit.edu	37	chr10	104591453	104591453	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgccccctcattcttccgcCgtgaggaaaatgccctttac	7	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104591453	T	T	104591453	1	4	10	0	1	0	0	0	0	0	0	0	4180	667	23	4		4	CYP17A1	10	104591453	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	824960	104591453	30943294	1084	27362											
ITPRIP	85450	broad.mit.edu	37	chr10	106075557	106075557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctccagaggtcccaggCcacgcgtgtctcgttctgct	13	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106075557	A	A	106075557	3	1	10	1	0	0	0	0	1	0	0	0	7993	739	26	3	1394	3	ITPRIP	10	106075557	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1484104	106075557	29459190	1085	27363											
SORCS1	114815	broad.mit.edu	37	chr10	108377793	108377793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctctttctcaactactgCcctccgttctccaggtaaaa	5	15	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108377793	A	A	108377793	1	1	10	0	1	0	0	0	0	0	0	0	15044	754	26	3		3	SORCS1	10	108377793	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2302236	108377793	27156954	1086	27364											
SORCS1	114815	broad.mit.edu	37	chr10	108431096	108431096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattttcgcttcttatatatCctttttgctcccatgataca	4	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108431096	A	A	108431096	3	1	10	1	0	0	0	0	1	0	0	0	15044	854	30	3	1696	3	SORCS1	10	108431096	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	53303	108431096	27103651	1087	27365											
SMC3	9126	broad.mit.edu	37	chr10	112350356	112350356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttttgcttgatatttagCatttttagaagagggaataa	9	3	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112350356	T	T	112350356	1	4	10	0	1	0	0	0	0	0	0	0	14898	725	25	4		4	SMC3	10	112350356	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3919260	112350356	23184391	1088	27366											
ACSL5	51703	broad.mit.edu	37	chr10	114171314	114171314	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcagttgaaaaagaggctCtcattaaaatgtgaatctgt	10	5	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114171314	G	G	114171314	1	3	10	0	1	0	0	0	0	0	0	0	180	928	32	4		4	ACSL5	10	114171314	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1820958	114171314	21363433	1089	27367											
NRAP	4892	broad.mit.edu	37	chr10	115356858	115356858	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacccacctcattgcagtgcAtatagctgttcttggcatga	9	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115356858	G	G	115356858	3	3	10	1	0	0	0	0	1	0	0	0	10733	217	8	5	798	5	NRAP	10	115356858	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1185544	115356858	20177889	1090	27368											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199317	118199317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcttgcctcccttagCtggttcataatccttcattt	4	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118199317	A	A	118199317	1	1	10	0	1	0	0	0	0	0	0	0	12247	812	28	3		3	PNLIPRP3	10	118199317	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2842459	118199317	17335430	1091	27369											
PNLIP	5406	broad.mit.edu	37	chr10	118313238	118313238	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggttttctttccgacaGtcggcgttcggttactcacc	9	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118313238	A	A	118313238	5	1	10	1	0	0	0	0	0	0	1	0	12244	1043	36	4	477	4	PNLIP	10	118313238	Splice_Site	SNP	G	TCGA-05-4397-01A-01D-1265-08	113921	118313238	17221509	1092	27370											
SFXN4	119559	broad.mit.edu	37	chr10	120917060	120917060	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaattacaggtgactttTatttcctagtcatattttct	4	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120917060	C	C	120917060	1	2	10	0	1	0	0	0	0	0	0	0	14310	1769	61	5		5	SFXN4	10	120917060	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2603822	120917060	14617687	1093	27371											
DMBT1	1755	broad.mit.edu	37	chr10	124344617	124344617	+	Intron	DEL	C	-	-													gtctccagcaaggcttatgtCccttgctgagcttgctgagc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124344617	-	-	124344617	6	5	10	0	1	1	0	1	0	0	0	0	4617	870	30	0		0	DMBT1	10	124344617	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	3427557	124344617	11190130	1094	27372											
HMX2	3167	broad.mit.edu	37	chr10	124909497	124909497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggcgcagactctggtgaGcatgccgctggtgttccggg	17	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124909497	T	T	124909497	3	4	10	1	0	0	0	0	1	0	0	0	7314	971	34	3	686	3	HMX2	10	124909497	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	564880	124909497	10625250	1095	27373											
CHST15	51363	broad.mit.edu	37	chr10	125801930	125801930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataatcttccacgggatagCggtctcgcagcccatctctt	9	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125801930	A	A	125801930	3	1	10	1	0	0	0	0	1	0	0	0	3434	768	27	3	785	3	CHST15	10	125801930	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	892433	125801930	9732817	1096	27374											
EBF3	253738	broad.mit.edu	37	chr10	131762117	131762117	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggcggcaggcggctgcCctggccgccctcgccctgct	15	18	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131762117	A	A	131762117	1	1	10	0	1	0	0	0	0	0	0	0	4922	638	22	2		2	EBF3	10	131762117	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	5960187	131762117	3772630	1097	27375											
GLRX3	10539	broad.mit.edu	37	chr10	131964638	131964638	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatattattcagccatgcTaattaaatcaccagcaaaat	4	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131964638	G	G	131964638	1	3	10	0	1	0	0	0	0	0	0	0	6525	1537	53	5		5	GLRX3	10	131964638	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	202521	131964638	3570109	1098	27376											
GPR123	84435	broad.mit.edu	37	chr10	134884455	134884455	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgaggccacgggaaccactCgcggctgaaatccagatgtg	14	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134884455	A	A	134884455	4	1	10	1	0	0	0	0	0	1	0	0	6702	899	31	3		3	GPR123	10	134884455	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2919817	134884455	650292	1099	27377											
VENTX	27287	broad.mit.edu	37	chr10	135051554	135051554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctccctggggagcctcCctggcccaggccagacatcc	10	18	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135051554	A	A	135051554	3	1	10	1	0	0	0	0	1	0	0	0	17280	623	22	2	138	2	VENTX	10	135051554	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	167099	135051554	483193	1100	27378											
ADAM8	101	broad.mit.edu	37	chr10	135086366	135086366	+	Frame_Shift_Del	DEL	T	-	-													ctgcttcgctccccagcatcTggaactggggacacgagacc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135086366	-	-	135086366	7	5	10	1	0	1	0	1	0	0	0	0	252	1580	55	0	1815	0	ADAM8	10	135086366	Frame_Shift_Del	DEL	T	TCGA-05-4397-01A-01D-1265-08	34812	135086366	448381	1101	27379											
BRSK2	9024	broad.mit.edu	37	chr11	1467122	1467122	+	Frame_Shift_Del	DEL	C	-	-													gcggcgggccattgagatggCccagcacggccagaggtgtg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1467122	-	-	1467122	7	5	10	1	0	1	0	1	0	0	0	0	1533	739	26	0	1257	0	BRSK2	11	1467122	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08		1467122	133539394	1102	27380											
CTSD	1509	broad.mit.edu	37	chr11	1774740	1774740	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgccttgggaactagaggCgggcagcctcggcgaagccc	16	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1774740	T	T	1774740	3	4	10	1	0	0	0	0	1	0	0	0	4066	768	27	4	10	4	CTSD	11	1774740	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	307618	1774740	133231776	1103	27381											
TNNI2	7136	broad.mit.edu	37	chr11	1861882	1861882	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgggctccatgtctgaagTgcaggtaccagcccctcccc	10	18	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1861882	A	A	1861882	3	1	10	1	0	0	0	0	1	0	0	0	16450	1696	59	5	211	5	TNNI2	11	1861882	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	87142	1861882	133144634	1104	27382											
OR51V1	283111	broad.mit.edu	37	chr11	5221647	5221647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatctctcgaatgatccccCacaggatccccagcactgtg	8	15	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5221647	A	A	5221647	3	1	10	1	0	0	0	0	1	0	0	0	11201	595	21	2	684	2	OR51V1	11	5221647	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3359765	5221647	129784869	1105	27383											
OR52N5	390075	broad.mit.edu	37	chr11	5799839	5799839	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacatgaattgttggaaacCagcataatgaattaaataga	7	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5799839	T	T	5799839	4	4	10	1	0	0	0	0	0	1	0	0	11224	595	21	4	952	4	OR52N5	11	5799839	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	578192	5799839	129206677	1106	27384											
OR52E4	390081	broad.mit.edu	37	chr11	5905755	5905755	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgatctgggtctgtccacatCcactatccccaaaatgctag	7	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5905755	T	T	5905755	3	4	10	1	0	0	0	0	1	0	0	0	11210	855	30	4	235	4	OR52E4	11	5905755	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	105916	5905755	129100761	1107	27385											
TRIM3	10612	broad.mit.edu	37	chr11	6472482	6472482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacaccagggtaagtaaaGtgacagcaggcctctcacct	11	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6472482	T	T	6472482	1	4	10	0	1	0	0	0	0	0	0	0	16628	1044	36	3		3	TRIM3	11	6472482	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	566727	6472482	128534034	1108	27386											
OR10A5	144124	broad.mit.edu	37	chr11	6867641	6867641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaagccttctctacgtgctCctcacacctccttgttgtct	5	15	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6867641	A	A	6867641	3	1	10	1	0	0	0	0	1	0	0	0	10987	855	30	3	730	3	OR10A5	11	6867641	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	395159	6867641	128138875	1109	27387											
OR10A2	341276	broad.mit.edu	37	chr11	6890907	6890907	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacttccaatcaataatcttTctccatgaccacagttgggg	7	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6890907	G	G	6890907	1	3	10	0	1	0	0	0	0	0	0	0	10984	1798	62	5		5	OR10A2	11	6890907	5'Flank	SNP	T	TCGA-05-4397-01A-01D-1265-08	23266	6890907	128115609	1110	27388											
ZNF215	7762	broad.mit.edu	37	chr11	6977119	6977119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaagattttgaatgtaGtgaaaataagaaaagctttg	12	1	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6977119	T	T	6977119	3	4	10	1	0	0	0	0	1	0	0	0	17897	1029	36	3	929	3	ZNF215	11	6977119	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	86212	6977119	128029397	1111	27389											
NLRP14	338323	broad.mit.edu	37	chr11	7091678	7091678	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctcctaagtgtaaactacAagttctagggtaagtctcca	8	9	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7091678	T	T	7091678	3	4	10	1	0	0	0	0	1	0	0	0	10571	130	5	5	3175	5	NLRP14	11	7091678	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	114559	7091678	127914838	1112	27390											
OR10A6	390093	broad.mit.edu	37	chr11	7949817	7949817	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattcataatcatttggtaGttgagaggatggcaaattgc	10	4	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7949817	A	A	7949817	2	1	10	1	0	0	0	0	0	0	0	1	10988	1020	36	4		4	OR10A6	11	7949817	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	858139	7949817	127056699	1113	27391											
TUB	7275	broad.mit.edu	37	chr11	8122429	8122429	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacggagagtatcatcgaGctgcaaaacaagacacctgt	9	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8122429	A	A	8122429	2	1	10	1	0	0	0	0	0	0	0	1	16868	962	34	4		4	TUB	11	8122429	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	172612	8122429	126884087	1114	27392											
MRVI1	10335	broad.mit.edu	37	chr11	10603596	10603596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggcctaaaaacaaaaCcatgtttttggcccgattcc	9	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10603596	A	A	10603596	1	1	10	0	1	0	0	0	0	0	0	0	9947	522	18	3		3	MRVI1	11	10603596	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2481167	10603596	124402920	1115	27393											
MICALCL	84953	broad.mit.edu	37	chr11	12376383	12376383	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagactggagcagaaactgAgagagaaaatgctcaaggag	14	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12376383	G	G	12376383	3	3	10	1	0	0	0	0	1	0	0	0	9665	296	11	5	1908	5	MICALCL	11	12376383	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1772787	12376383	122630133	1116	27394											
COPB1	1315	broad.mit.edu	37	chr11	14502516	14502516	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgatagctacaaagtgCtgtcagagtttccttttacc	9	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14502516	G	G	14502516	1	3	10	0	1	0	0	0	0	0	0	0	3760	812	28	4		4	COPB1	11	14502516	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2126133	14502516	120504000	1117	27395											
PDE3B	5140	broad.mit.edu	37	chr11	14880520	14880520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtttgtatacttccaacCtgatattaaagatattaaac	4	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14880520	A	A	14880520	1	1	10	0	1	0	0	0	0	0	0	0	11732	696	24	2		2	PDE3B	11	14880520	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	378004	14880520	120125996	1118	27396											
INSC	387755	broad.mit.edu	37	chr11	15134045	15134045	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctggcaatggagaggcGgccagcgaaggtccaggtgg	17	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15134045	T	T	15134045	2	4	10	1	0	0	0	0	0	0	0	1	7834	1103	39	1		1	INSC	11	15134045	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	253525	15134045	119872471	1119	27397											
INSC	387755	broad.mit.edu	37	chr11	15197587	15197587	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgcccgctccatggtcagCgagtacagtgctgtcagcag	12	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15197587	T	T	15197587	2	4	10	1	0	0	0	0	0	0	0	1	7834	767	27	4		4	INSC	11	15197587	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	63542	15197587	119808929	1120	27398											
ABCC8	6833	broad.mit.edu	37	chr11	17424144	17424144	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcctgagaatcaaatctcAtggcctgtgccccctggccc	9	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17424144	T	T	17424144	1	4	10	0	1	0	0	0	0	0	0	0	58	232	8	5		5	ABCC8	11	17424144	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2226557	17424144	117582372	1121	27399											
ABCC8	6833	broad.mit.edu	37	chr11	17491753	17491753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcatgtacaggtgcagatGgtgggattcggtcaccctga	15	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17491753	A	A	17491753	3	1	10	1	0	0	0	0	1	0	0	0	58	1348	47	4	4586	4	ABCC8	11	17491753	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	67609	17491753	117514763	1122	27400											
TPH1	7166	broad.mit.edu	37	chr11	18057531	18057531	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttcaaagtaaaattatcTggtagattcacagagagaac	7	7	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18057531	G	G	18057531	2	3	10	1	0	0	0	0	0	0	0	1	16525	1567	55	5		5	TPH1	11	18057531	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	565778	18057531	116948985	1123	27401											
HPS5	11234	broad.mit.edu	37	chr11	18303900	18303900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaatctcatcaccctaaCacaagttgttttctgaaaat	3	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18303900	A	A	18303900	1	1	10	0	1	0	0	0	0	0	0	0	7409	493	17	3		3	HPS5	11	18303900	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	246369	18303900	116702616	1124	27402											
HPS5	11234	broad.mit.edu	37	chr11	18309600	18309600	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttccaaactttatctctTaggcggaaatattcaattta	4	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18309600	C	C	18309600	1	2	10	0	1	0	0	0	0	0	0	0	7409	1769	61	5		5	HPS5	11	18309600	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	5700	18309600	116696916	1125	27403											
TSG101	7251	broad.mit.edu	37	chr11	18541090	18541090	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaatccaaaacaggtttgaGatctttgtatagagtaataa	8	4	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18541090	C	C	18541090	3	2	10	1	0	0	0	0	1	0	0	0	16741	942	33	4	1105	4	TSG101	11	18541090	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	231490	18541090	116465426	1126	27404											
PRMT3	10196	broad.mit.edu	37	chr11	20419024	20419024	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatttagaagactcatcacActgtactccctcccctttcc	4	15	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20419024	G	G	20419024	1	3	10	0	1	0	0	0	0	0	0	0	12644	174	6	5		5	PRMT3	11	20419024	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1877934	20419024	114587492	1127	27405											
NELL1	4745	broad.mit.edu	37	chr11	20869065	20869065	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtagtaaggggttgagGgattgatgatggctgtgata	17	3	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20869065	A	A	20869065	1	1	10	0	1	0	0	0	0	0	0	0	10428	1247	43	4		4	NELL1	11	20869065	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	450041	20869065	114137451	1128	27406											
GAS2	2620	broad.mit.edu	37	chr11	22707342	22707342	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaagcccacaaaggtaaaaGatcccaatgcaaaaatcact	5	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22707342	C	C	22707342	1	2	10	0	1	0	0	0	0	0	0	0	6307	957	33	4		4	GAS2	11	22707342	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1838277	22707342	112299174	1129	27407											
LUZP2	338645	broad.mit.edu	37	chr11	25004973	25004973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattaggaggaaaatggaaGgtagtaacccagcttgtaaa	12	4	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25004973	T	T	25004973	1	4	10	0	1	0	0	0	0	0	0	0	9174	1015	35	2		2	LUZP2	11	25004973	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2297631	25004973	110001543	1130	27408											
ANO3	63982	broad.mit.edu	37	chr11	26463463	26463463	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcaacattttggatttgcAggtatgaatataagcaagag	9	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26463463	C	C	26463463	5	2	10	1	0	0	0	0	0	0	1	0	698	202	7	5	51	5	ANO3	11	26463463	Splice_Site	SNP	A	TCGA-05-4397-01A-01D-1265-08	1458490	26463463	108543053	1131	27409											
ANO3	63982	broad.mit.edu	37	chr11	26663591	26663591	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggtaaggaaaaaaaaTctgcaggactatttggcctt	10	5	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26663591	A	A	26663591	1	1	10	0	1	0	0	0	0	0	0	0	698	1450	50	5		5	ANO3	11	26663591	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	200128	26663591	108342925	1132	27410											
BBOX1	8424	broad.mit.edu	37	chr11	27078769	27078769	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtacatcacatggcccgatGagcattacagtgaattccag	9	10	1	2	rs147348000	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27078769	A	A	27078769	3	1	10	1	0	0	0	0	1	0	0	0	1339	1291	45	4	247	4	BBOX1	11	27078769	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	415178	27078769	107927747	1133	27411											
KCNA4	3739	broad.mit.edu	37	chr11	30034042	30034042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgactggtggtggtggtGggagcccccaccagaacccc	16	13	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30034042	T	T	30034042	3	4	10	1	0	0	0	0	1	0	0	0	8075	1348	47	2	1781	2	KCNA4	11	30034042	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2955273	30034042	104972474	1134	27412											
PAX6	5080	broad.mit.edu	37	chr11	31811521	31811521	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgagacatatcaggttcActtccgggaacttgaactgg	10	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31811521	G	G	31811521	2	3	10	1	0	0	0	0	0	0	0	1	11577	156	6	5		5	PAX6	11	31811521	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	1777479	31811521	103194995	1135	27413											
LMO2	4005	broad.mit.edu	37	chr11	33886415	33886415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccagagtgagaccagcaCcgagggtccgagatcgtttt	12	11	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33886415	A	A	33886415	1	1	10	0	1	0	0	0	0	0	0	0	8926	522	18	3		3	LMO2	11	33886415	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2074894	33886415	101120101	1136	27414											
CD44	960	broad.mit.edu	37	chr11	35211479	35211479	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccctactgatgatgacgtGagcagcggctcctccagtga	11	12	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35211479	A	A	35211479	2	1	10	1	0	0	0	0	0	0	0	1	3047	1277	45	4		4	CD44	11	35211479	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1325064	35211479	99795037	1137	27415											
RAG1	5896	broad.mit.edu	37	chr11	36595976	36595976	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttggaaaaatataatcaCcacatctcaagtcacaagga	6	8	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36595976	G	G	36595976	3	3	10	1	0	0	0	0	1	0	0	0	13111	506	18	4	1124	4	RAG1	11	36595976	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1384497	36595976	98410540	1138	27416											
PRDM11	56981	broad.mit.edu	37	chr11	45245962	45245962	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatgttctggaggcctcaCtggaatctgcgaaggtggaa	15	7	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45245962	G	G	45245962	3	3	10	1	0	0	0	0	1	0	0	0	12558	564	20	4	1065	4	PRDM11	11	45245962	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	8649986	45245962	89760554	1139	27417											
CHST1	8534	broad.mit.edu	37	chr11	45672310	45672310	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtcttgcgggagaggttgTaggcgaaggtggggctctcc	20	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45672310	C	C	45672310	3	2	10	1	0	0	0	0	1	0	0	0	3428	1638	57	5	1075	5	CHST1	11	45672310	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	426348	45672310	89334206	1140	27418											
CKAP5	9793	broad.mit.edu	37	chr11	46812001	46812001	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggttcatgattttcaggcTcagtgtgttaatactgaccg	11	7	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46812001	A	A	46812001	1	1	10	0	1	0	0	0	0	0	0	0	3476	1566	54	5		5	CKAP5	11	46812001	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1139691	46812001	88194515	1141	27419											
LRP4	4038	broad.mit.edu	37	chr11	46896534	46896534	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggtctcaggagagggaTcacaggtcttcccatctccc	12	12	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46896534	C	C	46896534	3	2	10	1	0	0	0	0	1	0	0	0	9046	1435	50	5	1715	5	LRP4	11	46896534	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	84533	46896534	88109982	1142	27420											
ACP2	53	broad.mit.edu	37	chr11	47264484	47264484	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggcaacatgggagctgctCagcctgcccatcatggggtc	14	12	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47264484	T	T	47264484	1	4	10	0	1	0	0	0	0	0	0	0	163	841	29	4		4	ACP2	11	47264484	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	367950	47264484	87742032	1143	27421											
MADD	8567	broad.mit.edu	37	chr11	47330834	47330834	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctttattctatgcaggcAaagagcgttctactttatgg	8	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47330834	C	C	47330834	3	2	10	1	0	0	0	0	1	0	0	0	9240	131	5	5	4036	5	MADD	11	47330834	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	66350	47330834	87675682	1144	27422											
PTPRJ	5795	broad.mit.edu	37	chr11	48142858	48142858	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggatgatgacaaaccatttCttattatggtgtattctagg	10	5	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48142858	G	G	48142858	1	3	10	0	1	0	0	0	0	0	0	0	12912	928	32	4		4	PTPRJ	11	48142858	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	812024	48142858	86863658	1145	27423											
OR4X1	390113	broad.mit.edu	37	chr11	48285662	48285662	+	Frame_Shift_Del	DEL	T	-	-													ccaagcttatctttgactccTttatcaagaggaaagtcatt							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48285662	-	-	48285662	7	5	10	1	0	1	0	1	0	0	0	0	11178	1609	56	0	252	0	OR4X1	11	48285662	Frame_Shift_Del	DEL	T	TCGA-05-4397-01A-01D-1265-08	142804	48285662	86720854	1146	27424											
FOLH1	2346	broad.mit.edu	37	chr11	49175352	49175352	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttacttttaaatatataTatatacacacacatacacac	1	8	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49175352	C	C	49175352	1	2	10	0	1	0	0	0	0	0	0	0	6037	1421	49	5		5	FOLH1	11	49175352	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	889690	49175352	85831164	1147	27425											
FOLH1	2346	broad.mit.edu	37	chr11	49204846	49204846	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactcagtttcattcaaacGgttctctataaatcacatta	3	9	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49204846	A	A	49204846	1	1	10	0	1	0	0	0	0	0	0	0	6037	1131	39	4		4	FOLH1	11	49204846	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	29494	49204846	85801670	1148	27426											
FOLH1	2346	broad.mit.edu	37	chr11	49227674	49227674	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccaaaaatgctttcatatTatgctttggagtaatgttag	7	5	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49227674	A	A	49227674	3	1	10	1	0	0	0	0	1	0	0	0	6037	1754	61	5	2155	5	FOLH1	11	49227674	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	22828	49227674	85778842	1149	27427											
OR5L1	219437	broad.mit.edu	37	chr11	55579396	55579396	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcttgctgctacttctgtGggacggtgtgttctctgatt	11	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579396	A	A	55579396	3	1	10	1	0	0	0	0	1	0	0	0	11264	1348	47	4	456	4	OR5L1	11	55579396	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	6351722	55579396	79427120	1150	27428											
OR5L2	26338	broad.mit.edu	37	chr11	55594660	55594660	+	5'Flank	DEL	T	-	-													aatggagaataagttttaggTttttttctcctctaatcctg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55594660	-	-	55594660	6	5	10	0	1	1	0	1	0	0	0	0	11265	1740	60	0		0	OR5L2	11	55594660	5'Flank	DEL	T	TCGA-05-4397-01A-01D-1265-08	15264	55594660	79411856	1151	27429											
OR10AG1	282770	broad.mit.edu	37	chr11	55735206	55735206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaataagtgatagtacctGctccaaagaataagattaca	7	6	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55735206	T	T	55735206	3	4	10	1	0	0	0	0	1	0	0	0	10991	1319	46	3	174	3	OR10AG1	11	55735206	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	140546	55735206	79271310	1152	27430											
OR5M11	219487	broad.mit.edu	37	chr11	56310201	56310201	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatgagcggcgggtcagcaCagtagaagtggttgatgaca	15	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56310201	G	G	56310201	3	3	10	1	0	0	0	0	1	0	0	0	11268	478	17	4	387	4	OR5M11	11	56310201	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	574995	56310201	78696315	1153	27431											
P2RX3	5024	broad.mit.edu	37	chr11	57114659	57114659	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgcaaggattctgcccaGaggtgaggggaggacagagg	18	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57114659	T	T	57114659	4	4	10	1	0	0	0	0	0	1	0	0	11435	943	33	3	335	3	P2RX3	11	57114659	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	804458	57114659	77891857	1154	27432											
CTNND1	1500	broad.mit.edu	37	chr11	57569422	57569422	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcagctgcatacctgcaaCacttatgctaccgcaatgac	7	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57569422	T	T	57569422	3	4	10	1	0	0	0	0	1	0	0	0	4053	478	17	4	1192	4	CTNND1	11	57569422	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	454763	57569422	77437094	1155	27433											
OR5B21	219968	broad.mit.edu	37	chr11	58275014	58275014	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacttgctgatgcgtgtgtCagagcatgagagagccagga	14	8	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58275014	G	G	58275014	3	3	10	1	0	0	0	0	1	0	0	0	11245	826	29	4	366	4	OR5B21	11	58275014	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	705592	58275014	76731502	1156	27434											
GLYATL2	219970	broad.mit.edu	37	chr11	58605003	58605003	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggtgtagaaaatggcctTggagtcacttcaagaataac	10	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58605003	A	A	58605003	1	1	10	0	1	0	0	0	0	0	0	0	6545	1827	63	5		5	GLYATL2	11	58605003	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	329989	58605003	76401513	1157	27435											
OR5A2	219981	broad.mit.edu	37	chr11	59190327	59190327	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacgtcaggaggtagagccCcagaaataacatgaaaagga	11	8	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59190327	G	G	59190327	3	3	10	1	0	0	0	0	1	0	0	0	11234	623	22	4	876	4	OR5A2	11	59190327	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	585324	59190327	75816189	1158	27436											
OR4D9	390199	broad.mit.edu	37	chr11	59283042	59283042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcctcatatcttacacGgtcatcttgatgatgctgag	7	10	5	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59283042	T	T	59283042	2	4	10	1	0	0	0	0	0	0	0	1	11153	1103	39	1		1	OR4D9	11	59283042	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	92715	59283042	75723474	1159	27437											
MS4A15	219995	broad.mit.edu	37	chr11	60543111	60543111	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccaaacgccttcagcgcaGacttcaacatccccagcccg	7	18	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60543111	T	T	60543111	3	4	10	1	0	0	0	0	1	0	0	0	9953	942	33	3	668	3	MS4A15	11	60543111	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1260069	60543111	74463405	1160	27438											
SCGB1D2	10647	broad.mit.edu	37	chr11	62011191	62011191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctggatgccatgtcccCagagtgtgctgaggacatgg	14	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62011191	A	A	62011191	1	1	10	0	1	0	0	0	0	0	0	0	14009	609	21	2		2	SCGB1D2	11	62011191	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1468080	62011191	72995325	1161	27439											
SCGB1A1	7356	broad.mit.edu	37	chr11	62186652	62186652	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagacccttccctccctcCtggacttaggaactctcagg	8	16	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62186652	T	T	62186652	1	4	10	0	1	0	0	0	0	0	0	0	14006	696	24	4		4	SCGB1A1	11	62186652	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	175461	62186652	72819864	1162	27440											
LRRN4CL	221091	broad.mit.edu	37	chr11	62457740	62457740	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctgaacccatttcagagtCaaggaagaagctgacacaaa	8	11	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62457740	T	T	62457740	1	4	10	0	1	0	0	0	0	0	0	0	9125	841	29	4		4	LRRN4CL	11	62457740	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	271088	62457740	72548776	1163	27441											
SLC22A10	387775	broad.mit.edu	37	chr11	63059221	63059221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttacaatatgcaatttaCactgttggtgctgctctgtt	9	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63059221	A	A	63059221	1	1	10	0	1	0	0	0	0	0	0	0	14554	493	17	3		3	SLC22A10	11	63059221	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	601481	63059221	71947295	1164	27442											
LGALS12	85329	broad.mit.edu	37	chr11	63276526	63276526	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgcgcccttccttccctcAgccagactccccacgacaca	5	21	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63276526	T	T	63276526	1	4	10	0	1	0	0	0	0	0	0	0	8811	203	7	5		5	LGALS12	11	63276526	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	217305	63276526	71729990	1165	27443											
STIP1	10963	broad.mit.edu	37	chr11	63962113	63962113	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaagtggacgccgctcactGaggttctggaaatcggggaa	15	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63962113	A	A	63962113	1	1	10	0	1	0	0	0	0	0	0	0	15403	1305	45	4		4	STIP1	11	63962113	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	685587	63962113	71044403	1166	27444											
STIP1	10963	broad.mit.edu	37	chr11	63965146	63965146	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtttctctgcatggggagGagggctgctggccatagaat	15	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63965146	T	T	63965146	1	4	10	0	1	0	0	0	0	0	0	0	15403	1189	41	3		3	STIP1	11	63965146	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3033	63965146	71041370	1167	27445											
RPS6KA4	8986	broad.mit.edu	37	chr11	64137984	64137984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttacgatctctttgggGctcagcctttacgccaggct	11	12	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64137984	T	T	64137984	1	4	10	0	1	0	0	0	0	0	0	0	13764	1218	42	3		3	RPS6KA4	11	64137984	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	172838	64137984	70868532	1168	27446											
ATG2A	23130	broad.mit.edu	37	chr11	64662439	64662439	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgggtgccgggcaccCcaggctcagtcttgggcact	13	16	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64662439	A	A	64662439	1	1	10	0	1	0	0	0	0	0	0	0	1097	638	22	2		2	ATG2A	11	64662439	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	524455	64662439	70344077	1169	27447											
ATG2A	23130	broad.mit.edu	37	chr11	64664989	64664989	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagagggagggggtccagGtttacccaatgggactcagg	19	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64664989	A	A	64664989	1	1	10	0	1	0	0	0	0	0	0	0	1097	1276	44	4		4	ATG2A	11	64664989	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2550	64664989	70341527	1170	27448											
BATF2	116071	broad.mit.edu	37	chr11	64764504	64764504	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactccgcccccagagggcCaagtttcagtttctcctaaa	7	16	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64764504	G	G	64764504	1	3	10	0	1	0	0	0	0	0	0	0	1331	609	21	4		4	BATF2	11	64764504	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	99515	64764504	70242012	1171	27449											
PCNXL3	399909	broad.mit.edu	37	chr11	65384435	65384435	+	Frame_Shift_Del	DEL	G	-	-													gagaagcgcagctctaccatGggggagctggaggaagagcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65384435	-	-	65384435	7	5	10	1	0	1	0	1	0	0	0	0	11687	1348	47	0	300	0	PCNXL3	11	65384435	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	619931	65384435	69622081	1172	27450											
EIF1AD	84285	broad.mit.edu	37	chr11	65767716	65767716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccctacccccaccccagGggccctccagggctgcaggg	12	20	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65767716	T	T	65767716	1	4	10	0	1	0	0	0	0	0	0	0	5031	1247	43	2		2	EIF1AD	11	65767716	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	383281	65767716	69238800	1173	27451											
SUV420H1	51111	broad.mit.edu	37	chr11	67938611	67938611	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgctgtatctcgaccagttGacacaaactaaaataaaagt	6	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67938611	A	A	67938611	3	1	10	1	0	0	0	0	1	0	0	0	15532	1294	45	4	1829	4	SUV420H1	11	67938611	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2170895	67938611	67067905	1174	27452											
FCHSD2	9873	broad.mit.edu	37	chr11	72651574	72651574	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgcacatccaggagctatGgagaaagaagtagtctcatg	11	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72651574	A	A	72651574	1	1	10	0	1	0	0	0	0	0	0	0	5847	1363	47	4		4	FCHSD2	11	72651574	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4712963	72651574	62354942	1175	27453											
MAP6	4135	broad.mit.edu	37	chr11	75316665	75316665	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaggaggaggcctgccactCagtctgtgaagcaggattct	13	10	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75316665	A	A	75316665	1	1	10	0	1	0	0	0	0	0	0	0	9356	841	29	3		3	MAP6	11	75316665	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2665091	75316665	59689851	1176	27454											
MOGAT2	80168	broad.mit.edu	37	chr11	75428947	75428947	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccagcatggtagagttcgCgcccttgtttatgccgtggg	14	11	0	1	rs146774065		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75428947	T	T	75428947	3	4	10	1	0	0	0	0	1	0	0	0	9789	768	27	4	16	4	MOGAT2	11	75428947	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	112282	75428947	59577569	1177	27455											
ACER3	55331	broad.mit.edu	37	chr11	76709817	76709817	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctatttaggtcatgtatgGaatgttggtctttacattag	9	5	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76709817	C	C	76709817	3	2	10	1	0	0	0	0	1	0	0	0	140	1174	41	4	475	4	ACER3	11	76709817	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1280870	76709817	58296699	1178	27456											
RSF1	51773	broad.mit.edu	37	chr11	77394618	77394618	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggaaaaaaaaaattctatGactaaagatggaaggcaaga	9	3	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77394618	C	C	77394618	1	2	10	0	1	0	0	0	0	0	0	0	13810	1305	45	4		4	RSF1	11	77394618	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	684801	77394618	57611898	1179	27457											
GAB2	9846	broad.mit.edu	37	chr11	78095645	78095645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgcttgcagagagaacCtggtggaacaaagaatgagg	15	6	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78095645	A	A	78095645	1	1	10	0	1	0	0	0	0	0	0	0	6209	696	24	2		2	GAB2	11	78095645	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	701027	78095645	56910871	1180	27458											
DLG2	1740	broad.mit.edu	37	chr11	84027970	84027971	+	Intron	INS	-	A	A													ttttccgcacactgtcccacINSaaggtcctgttgaagctgga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84027971	A	A	84027970	6	5	10	0	1	1	1	0	0	0	0	0	4595	493	17	0		0	DLG2	11	84027970	Intron	INS	-	TCGA-05-4397-01A-01D-1265-08	5932325	84027970	50978546	1181	27459											
GRM5	2915	broad.mit.edu	37	chr11	88780315	88780315	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaatagtttactcttcccAaacctgaaattgtaactgtt	6	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88780315	C	C	88780315	1	2	10	0	1	0	0	0	0	0	0	0	6866	145	5	5		5	GRM5	11	88780315	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	4752345	88780315	46226201	1182	27460											
NOX4	50507	broad.mit.edu	37	chr11	89182728	89182728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatatggtaaaaataatgCaacaaatgtgataaaagttt	6	2	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89182728	A	A	89182728	1	1	10	0	1	0	0	0	0	0	0	0	10653	725	25	3		3	NOX4	11	89182728	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	402413	89182728	45823788	1183	27461											
TRIM49	57093	broad.mit.edu	37	chr11	89537464	89537465	+	Missense_Mutation	DNP	TG	AT	AT													ttgaggtttatctgctcggtTgactttgtgcattcagagca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	89537465	AT	AT	89537464	3	1	10	1	0	0	0	0	1	0	0	0	16649	1799	63	5	1208	5	TRIM49	11	89537464	Missense_Mutation	DNP	TG	TCGA-05-4397-01A-01D-1265-08	354736	89537464	45469052	1184	27462											
FAT3	120114	broad.mit.edu	37	chr11	92531208	92531208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcattcacaaagactacCaagcagaagtaaatgaaaat	6	7	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531208	A	A	92531208	3	1	10	1	0	0	0	0	1	0	0	0	5748	595	21	2	5063	2	FAT3	11	92531208	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2993744	92531208	42475308	1185	27463											
FAT3	120114	broad.mit.edu	37	chr11	92531578	92531578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccactggtgattcgagCcacagatgctgacagcaacc	10	14	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531578	A	A	92531578	3	1	10	1	0	0	0	0	1	0	0	0	5748	739	26	3	5433	3	FAT3	11	92531578	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	370	92531578	42474938	1186	27464											
FAT3	120114	broad.mit.edu	37	chr11	92616156	92616156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatagtcttccgcaagaaGgtcttccgcaagaactactc	7	12	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92616156	T	T	92616156	3	4	10	1	0	0	0	0	1	0	0	0	5748	991	35	2	12624	2	FAT3	11	92616156	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	84578	92616156	42390360	1187	27465											
MTMR2	8898	broad.mit.edu	37	chr11	95598934	95598934	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatacttgctcttgaagttaTaacatcatatcacatacact	3	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95598934	C	C	95598934	1	2	10	0	1	0	0	0	0	0	0	0	10038	1421	49	5		5	MTMR2	11	95598934	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2982778	95598934	39407582	1188	27466											
ANGPTL5	253935	broad.mit.edu	37	chr11	101775534	101775534	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgaaaaggctgaaataccAaagttctcaccatgtgactg	8	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101775534	T	T	101775534	1	4	10	0	1	0	0	0	0	0	0	0	617	145	5	5		5	ANGPTL5	11	101775534	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	6176600	101775534	33230982	1189	27467											
BIRC3	330	broad.mit.edu	37	chr11	102206810	102206810	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttattaatgaacaagaacatGatgttattaaacagaagaca	6	4	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102206810	A	A	102206810	3	1	10	1	0	0	0	0	1	0	0	0	1442	1290	45	4	1460	4	BIRC3	11	102206810	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	431276	102206810	32799706	1190	27468											
MMP1	4312	broad.mit.edu	37	chr11	102667841	102667841	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagagttggaaggctttctCaatggcatggtccacatctg	11	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102667841	G	G	102667841	3	3	10	1	0	0	0	0	1	0	0	0	9741	835	29	4	1038	4	MMP1	11	102667841	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	461031	102667841	32338675	1191	27469											
CASP1	834	broad.mit.edu	37	chr11	104951058	104951058	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttatgtttattacacatCaataaatcaagtgttttcta	3	6	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104951058	G	G	104951058	1	3	10	0	1	0	0	0	0	0	0	0	2694	841	29	4		4	CASP1	11	104951058	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2283217	104951058	30055458	1192	27470											
ARHGAP20	57569	broad.mit.edu	37	chr11	110454334	110454334	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggaggccaaagaatacttgGagcgacacacacagctaaat	10	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110454334	C	C	110454334	3	2	10	1	0	0	0	0	1	0	0	0	872	1174	41	4	2044	4	ARHGAP20	11	110454334	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5503276	110454334	24552182	1193	27471											
C11orf1	64776	broad.mit.edu	37	chr11	111750474	111750474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagtctggtggggaatGcacagagcaaaacaggcaac	13	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111750474	T	T	111750474	1	4	10	0	1	0	0	0	0	0	0	0	1640	1334	46	3		3	C11orf1	11	111750474	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1296140	111750474	23256042	1194	27472											
USP28	57646	broad.mit.edu	37	chr11	113670248	113670248	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtcaaagcattatgcTggccagttactaataaatga	8	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113670248	A	A	113670248	1	1	10	0	1	0	0	0	0	0	0	0	17185	1595	55	5		5	USP28	11	113670248	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1919774	113670248	21336268	1195	27473											
CADM1	23705	broad.mit.edu	37	chr11	115069138	115069138	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataccaaccgtgaactgctgGttctgtcgtcgccgttgtgt	11	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115069138	C	C	115069138	1	2	10	0	1	0	0	0	0	0	0	0	2592	1276	44	4		4	CADM1	11	115069138	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1398890	115069138	19937378	1196	27474											
CEP164	22897	broad.mit.edu	37	chr11	117232757	117232757	+	Intron	DEL	C	-	-													ctgtagttcctgtggggcctCccgtgtgccataccaggaac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117232757	-	-	117232757	6	5	10	0	1	1	0	1	0	0	0	0	3279	870	30	0		0	CEP164	11	117232757	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	2163619	117232757	17773759	1197	27475											
CEP164	22897	broad.mit.edu	37	chr11	117267987	117267987	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtggccaaagacccaccAggcatcaaggccctggaaga	13	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117267987	G	G	117267987	2	3	10	1	0	0	0	0	0	0	0	1	3279	175	7	5		5	CEP164	11	117267987	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	35230	117267987	17738529	1198	27476											
UBE4A	9354	broad.mit.edu	37	chr11	118243384	118243384	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagccatccagggagcccgtGagtacatgaacaagatctgt	11	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118243384	T	T	118243384	1	4	10	0	1	0	0	0	0	0	0	0	17008	1291	45	3		3	UBE4A	11	118243384	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	975397	118243384	16763132	1199	27477											
PHLDB1	23187	broad.mit.edu	37	chr11	118509945	118509945	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagggggcaggcctttcccGaagaccacatcgaccctcaa	10	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118509945	A	A	118509945	2	1	10	1	0	0	0	0	0	0	0	1	11946	1045	37	4		4	PHLDB1	11	118509945	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	266561	118509945	16496571	1200	27478											
BCL9L	283149	broad.mit.edu	37	chr11	118772871	118772871	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccgccgtttctcttcgtaGtactcctcctgcagcttgcg	8	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118772871	C	C	118772871	4	2	10	1	0	0	0	0	0	1	0	0	1387	1024	36	4	2930	4	BCL9L	11	118772871	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	262926	118772871	16233645	1201	27479											
CCDC84	338657	broad.mit.edu	37	chr11	118869066	118869066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgggatgggagtgcgggGcaggtcagtgaaggccagag	21	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118869066	A	A	118869066	1	1	10	0	1	0	0	0	0	0	0	0	2886	1218	42	4		4	CCDC84	11	118869066	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	96195	118869066	16137450	1202	27480											
ABCG4	64137	broad.mit.edu	37	chr11	119028871	119028871	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagagctctgaggtttttcAttcactgagctgggtgttct	12	7	4	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119028871	G	G	119028871	1	3	10	0	1	0	0	0	0	0	0	0	70	232	8	5		5	ABCG4	11	119028871	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	159805	119028871	15977645	1203	27481											
CBL	867	broad.mit.edu	37	chr11	119144584	119144584	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccccctccccaggacaatAgtcccttggaagagctttcg	8	16	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119144584	T	T	119144584	2	4	10	1	0	0	0	0	0	0	0	1	2726	410	15	5		5	CBL	11	119144584	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	115713	119144584	15861932	1204	27482											
MFRP	83552	broad.mit.edu	37	chr11	119216361	119216361	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctgcagagatggaggttAgagttcagaggtcaaaagga	16	4	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119216361	T	T	119216361	1	4	10	0	1	0	0	0	0	0	0	0	9619	435	15	5		5	MFRP	11	119216361	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	71777	119216361	15790155	1205	27483											
ARHGEF12	23365	broad.mit.edu	37	chr11	120300499	120300499	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggccaagaaacacattcctCagctgcaagagcagttatcc	8	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120300499	A	A	120300499	3	1	10	1	0	0	0	0	1	0	0	0	899	827	29	3	780	3	ARHGEF12	11	120300499	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1084138	120300499	14706017	1206	27484											
GRIK4	2900	broad.mit.edu	37	chr11	120823544	120823544	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatatgtgcggtgaatcttGtttttctctccatttccagg	9	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120823544	A	A	120823544	1	1	10	0	1	0	0	0	0	0	0	0	6842	1392	48	4		4	GRIK4	11	120823544	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	523045	120823544	14182972	1207	27485											
GRIK4	2900	broad.mit.edu	37	chr11	120831809	120831809	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccatttggttgctcaccaGcatcgggaattgggcagaat	11	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120831809	A	A	120831809	1	1	10	0	1	0	0	0	0	0	0	0	6842	986	34	4		4	GRIK4	11	120831809	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	8265	120831809	14174707	1208	27486											
ZNF202	7753	broad.mit.edu	37	chr11	123598298	123598298	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcatcaggtctggggattgGaaatgctgctcaagagaggg	15	7	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123598298	A	A	123598298	3	1	10	1	0	0	0	0	1	0	0	0	17889	1174	41	4	1116	4	ZNF202	11	123598298	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2766489	123598298	11408218	1209	27487											
TMEM225	338661	broad.mit.edu	37	chr11	123755530	123755530	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaaccaaaaacattttcTctatcctgatgtctctctat	4	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123755530	G	G	123755530	1	3	10	0	1	0	0	0	0	0	0	0	16270	1566	54	5		5	TMEM225	11	123755530	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	157232	123755530	11250986	1210	27488											
OR10S1	219873	broad.mit.edu	37	chr11	123847636	123847636	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagtgagctgggcagtgcAgggggagaaggcccgctgcc	18	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123847636	T	T	123847636	3	4	10	1	0	0	0	0	1	0	0	0	11012	188	7	5	236	5	OR10S1	11	123847636	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	92106	123847636	11158880	1211	27489											
SIAE	54414	broad.mit.edu	37	chr11	124508723	124508723	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattatacaaagcacccttTatgaaagtaagaataaagtt	7	5	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124508723	C	C	124508723	1	2	10	0	1	0	0	0	0	0	0	0	14411	1769	61	5		5	SIAE	11	124508723	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	661087	124508723	10497793	1212	27490											
ROBO3	64221	broad.mit.edu	37	chr11	124740583	124740583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtgtggcggagaacaGtgtgggccgcgctgaagcat	16	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124740583	T	T	124740583	3	4	10	1	0	0	0	0	1	0	0	0	13626	1029	36	3	1014	3	ROBO3	11	124740583	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	231860	124740583	10265933	1213	27491											
KCNJ5	3762	broad.mit.edu	37	chr11	128786320	128786320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcatgacctgccaagcCcggagctcctacatggatac	10	15	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128786320	A	A	128786320	2	1	10	1	0	0	0	0	0	0	0	1	8124	610	22	2		2	KCNJ5	11	128786320	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	4045737	128786320	6220196	1214	27492											
SPATA19	219938	broad.mit.edu	37	chr11	133714961	133714962	+	Intron	DNP	CC	AA	AA													atgaagaaggaagtccagatCcccacacccactgagaccac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	133714962	AA	AA	133714961	1	1	10	0	1	0	0	0	0	0	0	0	15120	870	30	3		3	SPATA19	11	133714961	Intron	DNP	CC	TCGA-05-4397-01A-01D-1265-08	4928641	133714961	1291555	1215	27493											
KDM5A	5927	broad.mit.edu	37	chr12	404668	404668	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccacccctttgccaacaTttatgatacctctaaggaac	5	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	404668	C	C	404668	1	2	10	0	1	0	0	0	0	0	0	0	8203	1508	52	5		5	KDM5A	12	404668	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08		404668	133447227	1216	27494											
WNK1	65125	broad.mit.edu	37	chr12	970113	970113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttttttttttggcggggGgtggtggtggggggtgttgt	20	2	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	970113	T	T	970113	1	4	10	0	1	0	0	0	0	0	0	0	17504	1247	43	2		2	WNK1	12	970113	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	565445	970113	132881782	1217	27495											
ERC1	23085	broad.mit.edu	37	chr12	1137189	1137189	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaaccaacagtacgggaggGagttcgggaagcagtgttgg	17	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1137189	T	T	1137189	2	4	10	1	0	0	0	0	0	0	0	1	5252	1161	41	3		3	ERC1	12	1137189	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	167076	1137189	132714706	1218	27496											
CACNA1C	775	broad.mit.edu	37	chr12	2702620	2702621	+	Intron	DNP	CC	AA	AA													agactgagactctcccagctCcttgcaaattgtataaacag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2702621	AA	AA	2702620	1	1	10	0	1	0	0	0	0	0	0	0	2566	870	30	3		3	CACNA1C	12	2702620	Intron	DNP	CC	TCGA-05-4397-01A-01D-1265-08	1565431	2702620	131149275	1219	27497											
CACNA1C	775	broad.mit.edu	37	chr12	2704961	2704961	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgctggggagagctgaggaGaggggctcccaagagccgac	18	10	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2704961	C	C	2704961	1	2	10	0	1	0	0	0	0	0	0	0	2566	957	33	4		4	CACNA1C	12	2704961	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2341	2704961	131146934	1220	27498											
EFCAB4B	84766	broad.mit.edu	37	chr12	3765441	3765441	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagaaaaggagagagtgaaGagccaggtactctggggcca	16	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3765441	C	C	3765441	1	2	10	0	1	0	0	0	0	0	0	0	4977	957	33	4		4	EFCAB4B	12	3765441	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1060480	3765441	130086454	1221	27499											
GALNT8	26290	broad.mit.edu	37	chr12	4848510	4848510	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaatggtgagcaacgtgatCaaagaataattgtaaaaatg	9	4	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4848510	A	A	4848510	1	1	10	0	1	0	0	0	0	0	0	0	6281	841	29	3		3	GALNT8	12	4848510	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1083069	4848510	129003385	1222	27500											
NTF3	4908	broad.mit.edu	37	chr12	5603701	5603701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgcgggtcctgctgagCgacagcacccccttggagcc	12	17	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603701	A	A	5603701	3	1	10	1	0	0	0	0	1	0	0	0	10791	767	27	3	366	3	NTF3	12	5603701	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	755191	5603701	128248194	1223	27501											
TNFRSF1A	7132	broad.mit.edu	37	chr12	6443190	6443190	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagttagggaagaacaacTggaagaagcagagaaagaag	13	4	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6443190	A	A	6443190	1	1	10	0	1	0	0	0	0	0	0	0	16416	1595	55	5		5	TNFRSF1A	12	6443190	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	839489	6443190	127408705	1224	27502											
SCNN1A	6337	broad.mit.edu	37	chr12	6464865	6464865	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggacccctcccagcagctCtaggaggtgagctcaaggta	12	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6464865	G	G	6464865	1	3	10	0	1	0	0	0	0	0	0	0	14040	928	32	4		4	SCNN1A	12	6464865	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	21675	6464865	127387030	1225	27503											
NCAPD2	9918	broad.mit.edu	37	chr12	6631989	6631989	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgacatttgtacatgttctCtcagtggtgcaggaggtgat	13	6	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6631989	T	T	6631989	1	4	10	0	1	0	0	0	0	0	0	0	10300	928	32	4		4	NCAPD2	12	6631989	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	167124	6631989	127219906	1226	27504											
ACRBP	84519	broad.mit.edu	37	chr12	6749203	6749203	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagggtagggatggggctGagctttggggaaaggttcta	20	3	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6749203	A	A	6749203	1	1	10	0	1	0	0	0	0	0	0	0	170	1305	45	4		4	ACRBP	12	6749203	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	117214	6749203	127102692	1227	27505											
CD163	9332	broad.mit.edu	37	chr12	7636212	7636212	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtcccccaggaacctcCatgccagatctccacacgtc	6	19	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7636212	A	A	7636212	4	1	10	1	0	0	0	0	0	1	0	0	2997	603	21	2	651	2	CD163	12	7636212	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	887009	7636212	126215683	1228	27506											
CLEC6A	93978	broad.mit.edu	37	chr12	8628815	8628815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaatggattgataagaCaccttatgagaaaaatgtca	9	5	1	3	rs139024188		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8628815	A	A	8628815	3	1	10	1	0	0	0	0	1	0	0	0	3552	478	17	3	482	3	CLEC6A	12	8628815	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	992603	8628815	125223080	1229	27507											
CLEC1A	51267	broad.mit.edu	37	chr12	10227980	10227981	+	Intron	DNP	CC	AG	AG													aataggaataagactcaggcCctgatcgaaacaggttcgaa							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	10227981	AG	AG	10227980	1	1	10	0	1	0	0	0	0	0	0	0	3537	638	22	2		2	CLEC1A	12	10227980	Intron	DNP	CC	TCGA-05-4397-01A-01D-1265-08	1599165	10227980	123623915	1230	27508											
C12orf59	120939	broad.mit.edu	37	chr12	10339082	10339082	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtccctgtgcttccgctgCtgctgtctgagccgccagca	11	16	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10339082	T	T	10339082	2	4	10	1	0	0	0	0	0	0	0	1	1715	805	28	4		4	C12orf59	12	10339082	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	111102	10339082	123512813	1231	27509											
TAS2R50	259296	broad.mit.edu	37	chr12	11138692	11138693	+	Missense_Mutation	DNP	CC	AA	AA													accatgacaaccgggtcattCcgcagcctcctaggactcca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11138693	AA	AA	11138692	3	1	10	1	0	0	0	0	1	0	0	0	15703	842	30	3	135	3	TAS2R50	12	11138692	Missense_Mutation	DNP	CC	TCGA-05-4397-01A-01D-1265-08	799610	11138692	122713203	1232	27510											
GUCY2C	2984	broad.mit.edu	37	chr12	14798242	14798242	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggaaattgtgtcatttAaaacttcctgaataggaaaa	9	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14798242	G	G	14798242	3	3	10	1	0	0	0	0	1	0	0	0	6961	372	13	5	1551	5	GUCY2C	12	14798242	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	3659550	14798242	119053653	1233	27511											
GUCY2C	2984	broad.mit.edu	37	chr12	14813879	14813880	+	Intron	DNP	GG	AT	AT													ctttcccttcctgcctctctGgataccgaacacaggcatga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	14813880	AT	AT	14813879	1	1	10	0	1	0	0	0	0	0	0	0	6961	1363	47	4		4	GUCY2C	12	14813879	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	15637	14813879	119038016	1234	27512											
ART4	420	broad.mit.edu	37	chr12	14993793	14993793	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaacgttcatactgctgtgGagtcctggcaacagaggcca	12	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14993793	C	C	14993793	3	2	10	1	0	0	0	0	1	0	0	0	1003	1174	41	4	513	4	ART4	12	14993793	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	179914	14993793	118858102	1235	27513											
PTPRO	5800	broad.mit.edu	37	chr12	15699587	15699587	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggaagagggagtagctgAtttctttgaagttttctgtc	14	4	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15699587	G	G	15699587	3	3	10	1	0	0	0	0	1	0	0	0	12917	333	12	5	2299	5	PTPRO	12	15699587	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	705794	15699587	118152308	1236	27514											
SLCO1C1	53919	broad.mit.edu	37	chr12	20874895	20874895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaggattctaattcttcCtctgagaaatccaagtttat	7	7	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20874895	A	A	20874895	2	1	10	1	0	0	0	0	0	0	0	1	14839	668	24	2		2	SLCO1C1	12	20874895	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	5175308	20874895	112977000	1237	27515											
ITPR2	3709	broad.mit.edu	37	chr12	26714783	26714784	+	Frame_Shift_Ins	INS	-	A	A													agagcgagctgatagtctccINSaacccattgctgctctctgc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26714784	A	A	26714783	7	5	10	1	0	1	1	0	0	0	0	0	7991	595	21	0	3464	0	ITPR2	12	26714783	Frame_Shift_Ins	INS	-	TCGA-05-4397-01A-01D-1265-08	5839888	26714783	107137112	1238	27516											
ITPR2	3709	broad.mit.edu	37	chr12	26784866	26784866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtgctcggtggggctcCcttgcttgctcgggtggatg	16	12	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26784866	A	A	26784866	3	1	10	1	0	0	0	0	1	0	0	0	7991	623	22	2	5382	2	ITPR2	12	26784866	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	70083	26784866	107067029	1239	27517											
BICD1	636	broad.mit.edu	37	chr12	32458910	32458910	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgatgacaaaatgaacGgtcatatccatgggcctctt	8	9	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32458910	T	T	32458910	3	4	10	1	0	0	0	0	1	0	0	0	1434	1116	39	1	873	1	BICD1	12	32458910	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5674044	32458910	101392985	1240	27518											
SYT10	341359	broad.mit.edu	37	chr12	33532835	33532835	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttcattccagtggtctcGcccaagaccctcagcatcca	6	16	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33532835	T	T	33532835	2	4	10	1	0	0	0	0	0	0	0	1	15585	1095	38	3		3	SYT10	12	33532835	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1073925	33532835	100319060	1241	27519											
ALG10	84920	broad.mit.edu	37	chr12	34179903	34179903	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaataattagaccatttctAcaaagaacaactgaataggt	5	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34179903	G	G	34179903	1	3	10	0	1	0	0	0	0	0	0	0	511	406	14	5		5	ALG10	12	34179903	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	647068	34179903	99671992	1242	27520											
ABCD2	225	broad.mit.edu	37	chr12	39973581	39973581	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactacagagcctcatgtatAagcattttgttttagatttg	7	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39973581	C	C	39973581	1	2	10	0	1	0	0	0	0	0	0	0	61	377	13	5		5	ABCD2	12	39973581	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	5793678	39973581	93878314	1243	27521											
CNTN1	1272	broad.mit.edu	37	chr12	41303937	41303937	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagagtagaccttgtaaAcatcttttctctattgaatc	5	9	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41303937	T	T	41303937	1	4	10	0	1	0	0	0	0	0	0	0	3672	58	2	5		5	CNTN1	12	41303937	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1330356	41303937	92547958	1244	27522											
CNTN1	1272	broad.mit.edu	37	chr12	41418949	41418949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactcatcctgaatgtttgCagattcggtattgggctgcc	10	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41418949	A	A	41418949	1	1	10	0	1	0	0	0	0	0	0	0	3672	725	25	3		3	CNTN1	12	41418949	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	115012	41418949	92432946	1245	27523											
PRICKLE1	144165	broad.mit.edu	37	chr12	42859131	42859131	+	Intron	DEL	G	-	-													acaaggtataaggaagaaacGaagaaaataaataaagatta							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42859131	-	-	42859131	6	5	10	0	1	1	0	1	0	0	0	0	12592	1073	37	0		0	PRICKLE1	12	42859131	Intron	DEL	G	TCGA-05-4397-01A-01D-1265-08	1440182	42859131	90992764	1246	27524											
ANO6	196527	broad.mit.edu	37	chr12	45744489	45744489	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagctgccctaatgaacgGtaccttctgtacagagaatg	9	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45744489	T	T	45744489	2	4	10	1	0	0	0	0	0	0	0	1	701	1248	44	3		3	ANO6	12	45744489	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	2885358	45744489	88107406	1247	27525											
ANO6	196527	broad.mit.edu	37	chr12	45797234	45797234	+	Frame_Shift_Del	DEL	G	-	-													ccttctagtgtgacccaggtGgctgtcttcttgaactgaca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45797234	-	-	45797234	7	5	10	1	0	1	0	1	0	0	0	0	701	1348	47	0	1873	0	ANO6	12	45797234	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	52745	45797234	88054661	1248	27526											
ARID2	196528	broad.mit.edu	37	chr12	46211516	46211516	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaaatgattataataaatTggtgctttcactgttatctg	7	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46211516	A	A	46211516	4	1	10	1	0	0	0	0	0	1	0	0	917	1821	63	5	500	5	ARID2	12	46211516	Nonsense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	414282	46211516	87640379	1249	27527											
COL2A1	1280	broad.mit.edu	37	chr12	48391491	48391491	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgaggtccaggggcaccCttggcataaagagaaaaagg	13	10	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48391491	A	A	48391491	5	1	10	1	0	0	0	0	0	0	1	0	3719	695	24	2	4226	2	COL2A1	12	48391491	Splice_Site	SNP	C	TCGA-05-4397-01A-01D-1265-08	2179975	48391491	85460404	1250	27528											
LALBA	3906	broad.mit.edu	37	chr12	48963868	48963868	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttatttatattcatgcaGaaagcctcaggggctctggt	9	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48963868	T	T	48963868	1	4	10	0	1	0	0	0	0	0	0	0	8676	957	33	3		3	LALBA	12	48963868	5'Flank	SNP	G	TCGA-05-4397-01A-01D-1265-08	572377	48963868	84888027	1251	27529											
LMBR1L	55716	broad.mit.edu	37	chr12	49495285	49495285	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cggggcatggcagcctcatcGatgagcagctccaggatgtg	15	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49495285	C	C	49495285	3	2	10	1	0	0	0	0	1	0	0	0	8915	1048	37	4	515	4	LMBR1L	12	49495285	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	531417	49495285	84356610	1252	27530											
FAIM2	23017	broad.mit.edu	37	chr12	50290724	50290724	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgggggaagctacggGctcagattaggtcaagaaag	18	6	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50290724	A	A	50290724	1	1	10	0	1	0	0	0	0	0	0	0	5422	1218	42	4		4	FAIM2	12	50290724	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	795439	50290724	83561171	1253	27531											
GPD1	2819	broad.mit.edu	37	chr12	50498346	50498346	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtactttcctgtgctcccCctcccaccaggggctcagcc	8	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50498346	T	T	50498346	1	4	10	0	1	0	0	0	0	0	0	0	6669	638	22	4		4	GPD1	12	50498346	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	207622	50498346	83353549	1254	27532											
TFCP2	7024	broad.mit.edu	37	chr12	51565960	51565960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgacaaaagaacaagtccCttttccccaatcgtaaacag	6	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51565960	A	A	51565960	1	1	10	0	1	0	0	0	0	0	0	0	15918	696	24	2		2	TFCP2	12	51565960	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1067614	51565960	82285935	1255	27533											
GALNT6	11226	broad.mit.edu	37	chr12	51759195	51759195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccaggttacacccaggCcggtgccctggtactcacag	11	16	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51759195	A	A	51759195	1	1	10	0	1	0	0	0	0	0	0	0	6279	754	26	3		3	GALNT6	12	51759195	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	193235	51759195	82092700	1256	27534											
ANKRD33	341405	broad.mit.edu	37	chr12	52283238	52283238	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccagcgggggctcacggcGttaatgaaggctgccatgcg	16	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52283238	C	C	52283238	2	2	10	1	0	0	0	0	0	0	0	1	661	1132	40	4		4	ANKRD33	12	52283238	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	524043	52283238	81568657	1257	27535											
NR4A1	3164	broad.mit.edu	37	chr12	52451017	52451017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagtcggccttcctggaGctcttcatcctccgcctggc	11	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52451017	T	T	52451017	3	4	10	1	0	0	0	0	1	0	0	0	10727	962	34	3	1349	3	NR4A1	12	52451017	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	167779	52451017	81400878	1258	27536											
KRT82	3888	broad.mit.edu	37	chr12	52789735	52789735	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatactagcagccgccaccaGagggctgggtaatggccata	13	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52789735	A	A	52789735	1	1	10	0	1	0	0	0	0	0	0	0	8567	957	33	4		4	KRT82	12	52789735	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	338718	52789735	81062160	1259	27537											
KRT6C	286887	broad.mit.edu	37	chr12	52863095	52863095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacagctgtggtggggagGggacaaggacacaagaagcc	16	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52863095	T	T	52863095	1	4	10	0	1	0	0	0	0	0	0	0	8553	1247	43	2		2	KRT6C	12	52863095	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	73360	52863095	80988800	1260	27538											
KRT74	121391	broad.mit.edu	37	chr12	52965008	52965008	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatcctgcacttccatggtCtcctggtgcagggttttgta	11	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52965008	T	T	52965008	1	4	10	0	1	0	0	0	0	0	0	0	8558	928	32	4		4	KRT74	12	52965008	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	101913	52965008	80886887	1261	27539											
KRT8	3856	broad.mit.edu	37	chr12	53295812	53295812	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctgctgctgcaggaggctCcacttggtctccagcatctt	10	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53295812	G	G	53295812	3	3	10	1	0	0	0	0	1	0	0	0	8564	856	30	4	1110	4	KRT8	12	53295812	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	330804	53295812	80556083	1262	27540											
HOXC10	3226	broad.mit.edu	37	chr12	54379159	54379159	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgcagtctgggagtgactTcaattgcggggtgatgaggg	17	5	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54379159	C	C	54379159	3	2	10	1	0	0	0	0	1	0	0	0	7376	1783	62	5	118	5	HOXC10	12	54379159	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1083347	54379159	79472736	1263	27541											
NCKAP1L	3071	broad.mit.edu	37	chr12	54912820	54912820	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcccccacaatcccttctCtttttatctcctaaatttgc	1	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54912820	G	G	54912820	1	3	10	0	1	0	0	0	0	0	0	0	10317	928	32	4		4	NCKAP1L	12	54912820	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	533661	54912820	78939075	1264	27542											
OR6C1	390321	broad.mit.edu	37	chr12	55715172	55715172	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacattaaaccctcagcaaaAgatagagtgtccttgagcaa	7	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55715172	G	G	55715172	2	3	10	1	0	0	0	0	0	0	0	1	11284	69	3	5		5	OR6C1	12	55715172	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	802352	55715172	78136723	1265	27543											
OR6C75	390323	broad.mit.edu	37	chr12	55759747	55759747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtggctcctctcttgaatCccttcatatacacactgaga	6	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55759747	A	A	55759747	3	1	10	1	0	0	0	0	1	0	0	0	11293	855	30	3	855	3	OR6C75	12	55759747	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	44575	55759747	78092148	1266	27544											
SILV	6490	broad.mit.edu	37	chr12	56359817	56359817	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcttccctccagcaacCaaaggcactggggggactgg	13	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56359817	T	T	56359817	1	4	10	0	1	0	0	0	0	0	0	0	14435	609	21	4		4	SILV	12	56359817	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	600070	56359817	77492078	1267	27545											
GLS2	27165	broad.mit.edu	37	chr12	56869564	56869564	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaactcaggtcttgtcaaGaggctttcctctctgaggcc	10	12	4	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56869564	A	A	56869564	1	1	10	0	1	0	0	0	0	0	0	0	6528	957	33	4		4	GLS2	12	56869564	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	509747	56869564	76982331	1268	27546											
LRP1	4035	broad.mit.edu	37	chr12	57578074	57578074	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgtctcctccagggtctGaggactgacccccacttcca	8	18	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57578074	A	A	57578074	1	1	10	0	1	0	0	0	0	0	0	0	9038	1305	45	4		4	LRP1	12	57578074	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	708510	57578074	76273821	1269	27547											
GLI1	2735	broad.mit.edu	37	chr12	57859454	57859454	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acccttggaaggtgatatgtCcagccccaactccacaggca	9	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57859454	G	G	57859454	3	3	10	1	0	0	0	0	1	0	0	0	6501	855	30	4	617	4	GLI1	12	57859454	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	281380	57859454	75992441	1270	27548											
DCTN2	10540	broad.mit.edu	37	chr12	57939916	57939916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccacccaacctcactacCcagcatccaacaacacccct	2	21	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57939916	A	A	57939916	1	1	10	0	1	0	0	0	0	0	0	0	4340	638	22	2		2	DCTN2	12	57939916	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	80462	57939916	75911979	1271	27549											
NUP107	57122	broad.mit.edu	37	chr12	69115507	69115507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttttttaaaatctgccGtgttttatatcattataaag	4	4	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69115507	T	T	69115507	1	4	10	0	1	0	0	0	0	0	0	0	10848	1160	40	3		3	NUP107	12	69115507	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	11175591	69115507	64736388	1272	27550											
NUP107	57122	broad.mit.edu	37	chr12	69115783	69115783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgagtttgttggattGttttgagtcatggtgatttg	13	2	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69115783	T	T	69115783	1	4	10	0	1	0	0	0	0	0	0	0	10848	1392	48	3		3	NUP107	12	69115783	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	276	69115783	64736112	1273	27551											
MDM2	4193	broad.mit.edu	37	chr12	69218142	69218142	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcctttttcttttctctcaGaatcatcggactcaggtaca	5	11	5	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69218142	T	T	69218142	5	4	10	1	0	0	0	0	0	0	1	0	9506	956	33	3	380	3	MDM2	12	69218142	Splice_Site	SNP	G	TCGA-05-4397-01A-01D-1265-08	102359	69218142	64633753	1274	27552											
CNOT2	4848	broad.mit.edu	37	chr12	70738079	70738079	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctgaaaacatctttaagtGatgatggctatctttaaatg	8	5	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70738079	A	A	70738079	1	1	10	0	1	0	0	0	0	0	0	0	3651	1305	45	4		4	CNOT2	12	70738079	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1519937	70738079	63113816	1275	27553											
PTPRR	5801	broad.mit.edu	37	chr12	71286868	71286869	+	Intron	DNP	GG	TT	TT													gaggctttaagacttgtgaaGgatttaggttagtctccata							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	71286869	TT	TT	71286868	1	4	10	0	1	0	0	0	0	0	0	0	12918	1015	35	2		2	PTPRR	12	71286868	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	548789	71286868	62565027	1276	27554											
TSPAN8	7103	broad.mit.edu	37	chr12	71551314	71551314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccccttctcttatttctctAgtgtacagtctgttcttgtt	5	12	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71551314	T	T	71551314	1	4	10	0	1	0	0	0	0	0	0	0	16778	435	15	5		5	TSPAN8	12	71551314	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	264446	71551314	62300581	1277	27555											
TBC1D15	64786	broad.mit.edu	37	chr12	72266764	72266764	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcattagattcctctaGtattctctatgctagaaagg	8	7	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72266764	A	A	72266764	3	1	10	1	0	0	0	0	1	0	0	0	15723	1029	36	4	319	4	TBC1D15	12	72266764	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	715450	72266764	61585131	1278	27556											
CAPS2	84698	broad.mit.edu	37	chr12	75672868	75672868	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatagtactgagtatgAaacagtttcctgaaaagttc	7	5	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75672868	T	T	75672868	1	4	10	0	1	0	0	0	0	0	0	0	2664	261	9	5		5	CAPS2	12	75672868	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	3406104	75672868	58179027	1279	27557											
CAPS2	84698	broad.mit.edu	37	chr12	75699745	75699745	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgaggagcatggacagggtGgctctgagcaacagcagggt	17	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75699745	C	C	75699745	1	2	10	0	1	0	0	0	0	0	0	0	2664	1363	47	4		4	CAPS2	12	75699745	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	26877	75699745	58152150	1280	27558											
PHLDA1	22822	broad.mit.edu	37	chr12	76424431	76424431	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcgggtgagggtgtgggtgcGagtgaggatgagagtgtgga	24	2	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76424431	C	C	76424431	3	2	10	1	0	0	0	0	1	0	0	0	11943	1059	37	4	118	4	PHLDA1	12	76424431	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	724686	76424431	57427464	1281	27559											
BBS10	79738	broad.mit.edu	37	chr12	76739974	76739974	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacctactggcaaaacacaAccagctggcatagatgagga	9	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76739974	T	T	76739974	2	4	10	1	0	0	0	0	0	0	0	1	1341	30	2	5		5	BBS10	12	76739974	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	315543	76739974	57111921	1282	27560											
PPFIA2	8499	broad.mit.edu	37	chr12	81741530	81741530	+	Frame_Shift_Del	DEL	C	-	-													agcacgcaactctgtagattCtttttcttcctgaattagcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81741530	-	-	81741530	7	5	10	1	0	1	0	1	0	0	0	0	12406	922	32	0	1819	0	PPFIA2	12	81741530	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08	5001556	81741530	52110365	1283	27561											
PPFIA2	8499	broad.mit.edu	37	chr12	81762625	81762625	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcctcattcattttctctCtttgcctagccttacatttt	3	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81762625	G	G	81762625	3	3	10	1	0	0	0	0	1	0	0	0	12406	913	32	4	2492	4	PPFIA2	12	81762625	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	21095	81762625	52089270	1284	27562											
LRRIQ1	84125	broad.mit.edu	37	chr12	85450738	85450738	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaaaatgcacctgaacctGatagcatgacctgctgtgta	9	9	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85450738	A	A	85450738	3	1	10	1	0	0	0	0	1	0	0	0	9116	1290	45	4	2193	4	LRRIQ1	12	85450738	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3688113	85450738	48401157	1285	27563											
CLLU1OS	574016	broad.mit.edu	37	chr12	92814742	92814742	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgattcctgctgctctccCacatttcccatctttctcct	3	16	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92814742	G	G	92814742	1	3	10	0	1	0	0	0	0	0	0	0	3573	609	21	4		4	CLLU1OS	12	92814742	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	7364004	92814742	41037153	1286	27564											
C12orf63	374467	broad.mit.edu	37	chr12	97087505	97087505	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttctcctgataggttctGcctctccttgcattgtatca	6	11	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97087505	T	T	97087505	2	4	10	1	0	0	0	0	0	0	0	1	1719	1306	46	3		3	C12orf63	12	97087505	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	4272763	97087505	36764390	1287	27565											
TMPO	7112	broad.mit.edu	37	chr12	98927517	98927517	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcagaactatcttttcccttCcatgaatctattttaaaagt	3	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98927517	G	G	98927517	1	3	10	0	1	0	0	0	0	0	0	0	16360	854	30	4		4	TMPO	12	98927517	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1840012	98927517	34924378	1288	27566											
FAM71C	196472	broad.mit.edu	37	chr12	100042298	100042298	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccgcctgcagagatcttaGaactaaccaggctgcttccc	9	14	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100042298	C	C	100042298	3	2	10	1	0	0	0	0	1	0	0	0	5660	943	33	4	348	4	FAM71C	12	100042298	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1114781	100042298	33809597	1289	27567											
NR1H4	9971	broad.mit.edu	37	chr12	100926249	100926249	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccacaggtttcttcaggagAagcattaccaaaaacgctgt	8	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100926249	T	T	100926249	3	4	10	1	0	0	0	0	1	0	0	0	10714	243	9	5	469	5	NR1H4	12	100926249	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	883951	100926249	32925646	1290	27568											
ANO4	121601	broad.mit.edu	37	chr12	101480521	101480521	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgctgcctttaagtgggcGttaatcaggaataactctca	9	9	2	0	rs138063019	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101480521	A	A	101480521	2	1	10	1	0	0	0	0	0	0	0	1	699	1132	40	4		4	ANO4	12	101480521	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	554272	101480521	32371374	1291	27569											
SPIC	121599	broad.mit.edu	37	chr12	101873243	101873244	+	Intron	DNP	GG	TT	TT													ccacaggagaagtgcaaagtGgcaagaaaacatagatgaga							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	101873244	TT	TT	101873243	1	4	10	0	1	0	0	0	0	0	0	0	15169	1363	47	2		2	SPIC	12	101873243	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	392722	101873243	31978652	1292	27570											
IGF1	3479	broad.mit.edu	37	chr12	102813510	102813510	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctcatgttagggtgcaatCtgctttcttcagtcttccac	8	12	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102813510	G	G	102813510	1	3	10	0	1	0	0	0	0	0	0	0	7640	928	32	4		4	IGF1	12	102813510	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	940267	102813510	31038385	1293	27571											
STAB2	55576	broad.mit.edu	37	chr12	104042690	104042690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattcagaaagggacaggCgagccttgtctattagaatc	11	7	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104042690	A	A	104042690	1	1	10	0	1	0	0	0	0	0	0	0	15356	783	27	3		3	STAB2	12	104042690	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1229180	104042690	29809205	1294	27572											
RIC8B	55188	broad.mit.edu	37	chr12	107279815	107279815	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcatcacctgctcaactctCaatattgctttatcagcatc	4	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107279815	G	G	107279815	1	3	10	0	1	0	0	0	0	0	0	0	13465	841	29	4		4	RIC8B	12	107279815	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	3237125	107279815	26572080	1295	27573											
WSCD2	9671	broad.mit.edu	37	chr12	108618519	108618519	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctctctggctcttcagatgGaagtgcagtgttccggggct	13	10	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108618519	T	T	108618519	3	4	10	1	0	0	0	0	1	0	0	0	17534	1174	41	3	700	3	WSCD2	12	108618519	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1338704	108618519	25233376	1296	27574											
CMKLR1	1240	broad.mit.edu	37	chr12	108685692	108685692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttggtaaagcttctatGgctggggtaggaagagtggc	15	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108685692	T	T	108685692	3	4	10	1	0	0	0	0	1	0	0	0	3611	1348	47	2	77	2	CMKLR1	12	108685692	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	67173	108685692	25166203	1297	27575											
CMKLR1	1240	broad.mit.edu	37	chr12	108686330	108686330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagcacagagatgcagCggtcagagctgatgatggtc	17	7	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108686330	A	A	108686330	3	1	10	1	0	0	0	0	1	0	0	0	3611	768	27	3	715	3	CMKLR1	12	108686330	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	638	108686330	25165565	1298	27576											
TCHP	84260	broad.mit.edu	37	chr12	110354442	110354442	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactgacttcatgggtaccAtaagtacagagaacaaggga	11	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110354442	G	G	110354442	1	3	10	0	1	0	0	0	0	0	0	0	15824	232	8	5		5	TCHP	12	110354442	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	1668112	110354442	23497453	1299	27577											
PTPN11	5781	broad.mit.edu	37	chr12	112924336	112924336	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacctggccggaccacggcGtgcccagcgaccctgggggc	17	16	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112924336	A	A	112924336	3	1	10	1	0	0	0	0	1	0	0	0	12886	1145	40	4	1324	4	PTPN11	12	112924336	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2569894	112924336	20927559	1300	27578											
OAS1	4938	broad.mit.edu	37	chr12	113357227	113357227	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgcagacgatgagaccgacGatcccaggaggtatcagaaa	13	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113357227	A	A	113357227	3	1	10	1	0	0	0	0	1	0	0	0	10894	1058	37	4	1151	4	OAS1	12	113357227	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	432891	113357227	20494668	1301	27579											
TPCN1	53373	broad.mit.edu	37	chr12	113735129	113735129	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacggaacacagcataggttCtgcagcaggagccgcagtgg	14	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113735129	G	G	113735129	1	3	10	0	1	0	0	0	0	0	0	0	16519	928	32	4		4	TPCN1	12	113735129	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	377902	113735129	20116766	1302	27580											
LHX5	64211	broad.mit.edu	37	chr12	113906917	113906917	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggctagtgaggggcccaGgcttcctacctgagttgagg	15	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113906917	T	T	113906917	1	4	10	0	1	0	0	0	0	0	0	0	8846	1015	35	2		2	LHX5	12	113906917	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	171788	113906917	19944978	1303	27581											
RBM19	9904	broad.mit.edu	37	chr12	114384275	114384275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggtaacacgtggagcatCctgccctggatgggaatgac	14	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114384275	A	A	114384275	3	1	10	1	0	0	0	0	1	0	0	0	13229	854	30	3	1521	3	RBM19	12	114384275	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	477358	114384275	19467620	1304	27582											
NOS1	4842	broad.mit.edu	37	chr12	117657886	117657886	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcctgtcactcaccctcatCcggctgatgaatacgccggc	9	16	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117657886	A	A	117657886	2	1	10	1	0	0	0	0	0	0	0	1	10636	842	30	3		3	NOS1	12	117657886	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	3273611	117657886	16194009	1305	27583											
GCN1L1	10985	broad.mit.edu	37	chr12	120585948	120585948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgggaggtcagggcaaGcaccctcacgggaaaggcct	16	10	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120585948	T	T	120585948	1	4	10	0	1	0	0	0	0	0	0	0	6361	986	34	3		3	GCN1L1	12	120585948	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2928062	120585948	13265947	1306	27584											
GCN1L1	10985	broad.mit.edu	37	chr12	120596319	120596319	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgtgcagcagcatcacCgccctcttcacagccaccga	10	16	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120596319	A	A	120596319	2	1	10	1	0	0	0	0	0	0	0	1	6361	639	23	1		1	GCN1L1	12	120596319	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	10371	120596319	13255576	1307	27585											
C12orf43	64897	broad.mit.edu	37	chr12	121442169	121442169	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttggctttctttttcaaCttccttttcttctttgcctc	3	12	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121442169	T	T	121442169	2	4	10	1	0	0	0	0	0	0	0	1	1702	564	20	4		4	C12orf43	12	121442169	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	845850	121442169	12409726	1308	27586											
CAMKK2	10645	broad.mit.edu	37	chr12	121701579	121701579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaacaaagccagggcctcCctccctcctgggcgcctcca	8	18	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121701579	A	A	121701579	1	1	10	0	1	0	0	0	0	0	0	0	2633	638	22	2		2	CAMKK2	12	121701579	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	259410	121701579	12150316	1309	27587											
WDR66	144406	broad.mit.edu	37	chr12	122405864	122405864	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacgtgccaggcctctctcGggcccagctacctgagtctg	12	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122405864	A	A	122405864	1	1	10	0	1	0	0	0	0	0	0	0	17444	1131	39	4		4	WDR66	12	122405864	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	704285	122405864	11446031	1310	27588											
MLXIP	22877	broad.mit.edu	37	chr12	122617945	122617945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgagccttcctgacagCctcatcgcgccccctaccgc	8	19	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122617945	A	A	122617945	3	1	10	1	0	0	0	0	1	0	0	0	9729	738	26	3	1177	3	MLXIP	12	122617945	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	212081	122617945	11233950	1311	27589											
KNTC1	9735	broad.mit.edu	37	chr12	123055684	123055684	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttccttggtatgatgtgAgaatggatttttagtaatga	11	2	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123055684	T	T	123055684	1	4	10	0	1	0	0	0	0	0	0	0	8499	319	11	5		5	KNTC1	12	123055684	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	437739	123055684	10796211	1312	27590											
HIP1R	9026	broad.mit.edu	37	chr12	123341206	123341206	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaccagctggagaagctcaAgagggagctggaggccaagg	17	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123341206	G	G	123341206	3	3	10	1	0	0	0	0	1	0	0	0	7182	72	3	5	1619	5	HIP1R	12	123341206	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	285522	123341206	10510689	1313	27591											
DNAH10	196385	broad.mit.edu	37	chr12	124360011	124360011	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtctctgcatttaatttaTtcctccatcctgaaaggcca	6	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124360011	C	C	124360011	2	2	10	1	0	0	0	0	0	0	0	1	4638	1500	52	5		5	DNAH10	12	124360011	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	1018805	124360011	9491884	1314	27592											
DNAH10	196385	broad.mit.edu	37	chr12	124398859	124398859	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaactcacggcagcctccCtctcctcccgtgccaggtgg	10	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124398859	T	T	124398859	1	4	10	0	1	0	0	0	0	0	0	0	4638	696	24	4		4	DNAH10	12	124398859	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	38848	124398859	9453036	1315	27593											
AACS	65985	broad.mit.edu	37	chr12	125619409	125619409	+	Intron	DEL	C	-	-													tataacattggtacgtgcttCccctccctgagcgttctcca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125619409	-	-	125619409	6	5	10	0	1	1	0	1	0	0	0	0	9	870	30	0		0	AACS	12	125619409	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	1220550	125619409	8232486	1316	27594											
TMEM132B	114795	broad.mit.edu	37	chr12	125811149	125811149	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagatttggtgccctcgcctCagctccagactctacgggaa	10	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125811149	T	T	125811149	1	4	10	0	1	0	0	0	0	0	0	0	16169	841	29	4		4	TMEM132B	12	125811149	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	191740	125811149	8040746	1317	27595											
TMEM132B	114795	broad.mit.edu	37	chr12	125835017	125835017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatacagctggtcattaaaGtggtgaaaacagattttatt	9	4	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125835017	A	A	125835017	1	1	10	0	1	0	0	0	0	0	0	0	16169	1044	36	4		4	TMEM132B	12	125835017	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	23868	125835017	8016878	1318	27596											
TMEM132B	114795	broad.mit.edu	37	chr12	126137174	126137174	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatgttcttcagtccccacAgcaggtgagcgttccagggg	14	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126137174	T	T	126137174	3	4	10	1	0	0	0	0	1	0	0	0	16169	188	7	5	2117	5	TMEM132B	12	126137174	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	302157	126137174	7714721	1319	27597											
RIMBP2	23504	broad.mit.edu	37	chr12	130897050	130897050	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaacatttacatgactttGgcatatttaaatgatgcaat	6	6	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130897050	A	A	130897050	1	1	10	0	1	0	0	0	0	0	0	0	13472	1363	47	4		4	RIMBP2	12	130897050	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4759876	130897050	2954845	1320	27598											
RIMBP2	23504	broad.mit.edu	37	chr12	130912820	130912820	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgtcctcctccatgatGtctgagaggtcagacccccg	9	16	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130912820	A	A	130912820	2	1	10	1	0	0	0	0	0	0	0	1	13472	1368	48	4		4	RIMBP2	12	130912820	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	15770	130912820	2939075	1321	27599											
RIMBP2	23504	broad.mit.edu	37	chr12	130919333	130919333	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccaccgaggcgcccctcctCttgaagtctggagagtcata	10	14	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130919333	A	A	130919333	3	1	10	1	0	0	0	0	1	0	0	0	13472	912	32	3	1046	3	RIMBP2	12	130919333	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	6513	130919333	2932562	1322	27600											
GALNT9	50614	broad.mit.edu	37	chr12	132683931	132683931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccgcgggaggaggaggGggcgtgtgggatgctctggc	23	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132683931	T	T	132683931	1	4	10	0	1	0	0	0	0	0	0	0	6282	1247	43	2		2	GALNT9	12	132683931	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1764598	132683931	1167964	1323	27601											
POLE	5426	broad.mit.edu	37	chr12	133214484	133214484	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagattcaccatggtgagtCctgcacttctaacgacctcc	7	14	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133214484	T	T	133214484	1	4	10	0	1	0	0	0	0	0	0	0	12291	870	30	4		4	POLE	12	133214484	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	530553	133214484	637411	1324	27602											
ZNF268	10795	broad.mit.edu	37	chr12	133779191	133779191	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagaaaccctatggttgtAatgaatgtgggaaagacttc	11	5	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133779191	T	T	133779191	3	4	10	1	0	0	0	0	1	0	0	0	17933	362	13	5		5	ZNF268	12	133779191	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	564707	133779191	72704	1325	27603											
ZMYM2	7750	broad.mit.edu	37	chr13	20579402	20579402	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtattttttttctttatcAtttaattctaacaaatagga	3	4	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20579402	T	T	20579402	1	4	10	0	1	0	0	0	0	0	0	0	17826	232	8	5		5	ZMYM2	13	20579402	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08		20579402	94590476	1326	27604											
MIPEP	4285	broad.mit.edu	37	chr13	24455780	24455780	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaactgcctacggcacaagtCcatgaaaccggatcacccag	8	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24455780	T	T	24455780	1	4	10	0	1	0	0	0	0	0	0	0	9685	870	30	4		4	MIPEP	13	24455780	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3876378	24455780	90714098	1327	27605											
ATP8A2	51761	broad.mit.edu	37	chr13	26108269	26108269	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaatgcccgtgatatGgtaactgcagcatttgcttt	9	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26108269	C	C	26108269	1	2	10	0	1	0	0	0	0	0	0	0	1197	1363	47	4		4	ATP8A2	13	26108269	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1652489	26108269	89061609	1328	27606											
FLT1	2321	broad.mit.edu	37	chr13	28891497	28891497	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcctgatgggctgaggGgagcatctctaaaggaaaga	16	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28891497	A	A	28891497	1	1	10	0	1	0	0	0	0	0	0	0	5999	1247	43	4		4	FLT1	13	28891497	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2783228	28891497	86278381	1329	27607											
MTUS2	23281	broad.mit.edu	37	chr13	29608211	29608211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagcgagcgccatccacCcaccaggacccataacaaca	6	18	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29608211	A	A	29608211	3	1	10	1	0	0	0	0	1	0	0	0	10060	623	22	2	2431	2	MTUS2	13	29608211	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	716714	29608211	85561667	1330	27608											
MTUS2	23281	broad.mit.edu	37	chr13	29855914	29855914	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggacacacccaagggggcCggccgggtggcccctccagc	15	16	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29855914	T	T	29855914	2	4	10	1	0	0	0	0	0	0	0	1	10060	639	23	4		4	MTUS2	13	29855914	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	247703	29855914	85313964	1331	27609											
BRCA2	675	broad.mit.edu	37	chr13	32914679	32914679	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggatttagtacagcaagtGgaaagcaagtttccatttta	9	6	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32914679	A	A	32914679	3	1	10	1	0	0	0	0	1	0	0	0	1508	1349	47	4	6225	4	BRCA2	13	32914679	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3058765	32914679	82255199	1332	27610											
POSTN	10631	broad.mit.edu	37	chr13	38145671	38145671	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccggaataggacatttatttCaacattcggtgtgactcaac	8	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38145671	T	T	38145671	1	4	10	0	1	0	0	0	0	0	0	0	12354	841	29	4		4	POSTN	13	38145671	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	5230992	38145671	77024207	1333	27611											
MRPS31	10240	broad.mit.edu	37	chr13	41344933	41344933	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggcgtgtagtagagcacagCgaccaggtttgtaatcgtag	14	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41344933	G	G	41344933	1	3	10	0	1	0	0	0	0	0	0	0	9935	783	27	4		4	MRPS31	13	41344933	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3199262	41344933	73824945	1334	27612											
RB1	5925	broad.mit.edu	37	chr13	49033954	49033954	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtatgaactcatgagagaCaggcatttggaccaagtaag	12	6	1	3	rs3092903		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49033954	G	G	49033954	3	3	10	1	0	0	0	0	1	0	0	0	13206	477	17	4	2169	4	RB1	13	49033954	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	7689021	49033954	66135924	1335	27613											
VPS36	51028	broad.mit.edu	37	chr13	53007965	53007965	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaccaaccacattgtgtttTcaatggcgggaaaggaccta	9	9	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53007965	A	A	53007965	1	1	10	0	1	0	0	0	0	0	0	0	17331	1798	62	5		5	VPS36	13	53007965	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3974011	53007965	62161913	1336	27614											
LECT1	11061	broad.mit.edu	37	chr13	53286636	53286636	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attgtcttcctgatctgcctCctgttaaccctactgctcct	5	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53286636	G	G	53286636	1	3	10	0	1	0	0	0	0	0	0	0	8784	870	30	4		4	LECT1	13	53286636	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	278671	53286636	61883242	1337	27615											
OLFM4	10562	broad.mit.edu	37	chr13	53602869	53602869	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcacacgttccctggccaCtccctcttttcctacatgct	5	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53602869	A	A	53602869	1	1	10	0	1	0	0	0	0	0	0	0	10950	580	20	3		3	OLFM4	13	53602869	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	316233	53602869	61567009	1338	27616											
PCDH20	64881	broad.mit.edu	37	chr13	61987001	61987001	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataatggacacaagagcagTgattacagcagggatgcagc	12	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61987001	A	A	61987001	3	1	10	1	0	0	0	0	1	0	0	0	11609	1696	59	5	1628	5	PCDH20	13	61987001	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	8384132	61987001	53182877	1339	27617											
KLHL1	57626	broad.mit.edu	37	chr13	70413063	70413063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatataaaagctgcaacacGgtataacacaggatgtatag	8	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70413063	T	T	70413063	1	4	10	0	1	0	0	0	0	0	0	0	8436	1131	39	1		1	KLHL1	13	70413063	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	8426062	70413063	44756815	1340	27618											
KLHL1	57626	broad.mit.edu	37	chr13	70514361	70514361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgtcctcttttaattcCaagcagcctaaacataagca	6	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70514361	A	A	70514361	3	1	10	1	0	0	0	0	1	0	0	0	8436	593	21	2	1453	2	KLHL1	13	70514361	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	101298	70514361	44655517	1341	27619											
UCHL3	7347	broad.mit.edu	37	chr13	76143517	76143517	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagaagactttaggtgttAaaatttagctttgttgtctt	8	3	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76143517	G	G	76143517	1	3	10	0	1	0	0	0	0	0	0	0	17047	377	13	5		5	UCHL3	13	76143517	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	5629156	76143517	39026361	1342	27620											
MYCBP2	23077	broad.mit.edu	37	chr13	77663032	77663032	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgctatttcaagaccttCtagatcatgatgttgtataa	6	7	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77663032	G	G	77663032	3	3	10	1	0	0	0	0	1	0	0	0	10112	922	32	4	3468	4	MYCBP2	13	77663032	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1519515	77663032	37506846	1343	27621											
SCEL	8796	broad.mit.edu	37	chr13	78187957	78187957	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acactaggattctattgaatGacttgcacctgtcaaaacaa	6	9	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78187957	T	T	78187957	1	4	10	0	1	0	0	0	0	0	0	0	14000	1305	45	3		3	SCEL	13	78187957	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	524925	78187957	36981921	1344	27622											
EDNRB	1910	broad.mit.edu	37	chr13	78492680	78492680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccagcgcaaccagggcgCgtccgcacagacttggaggc	14	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78492680	A	A	78492680	3	1	10	1	0	0	0	0	1	0	0	0	4960	768	27	3	1448	3	EDNRB	13	78492680	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	304723	78492680	36677198	1345	27623											
DZIP1	22873	broad.mit.edu	37	chr13	96293544	96293544	+	Intron	DEL	C	-	-													atcgtgctcacacacagctgCccacctggtaatagttggct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96293544	-	-	96293544	6	5	10	0	1	1	0	1	0	0	0	0	4903	754	26	0		0	DZIP1	13	96293544	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	17800864	96293544	18876334	1346	27624											
DOCK9	23348	broad.mit.edu	37	chr13	99534136	99534136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaagagcatccatccaCctcccttaccgagtcacgtt	8	14	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99534136	A	A	99534136	1	1	10	0	1	0	0	0	0	0	0	0	4734	522	18	3		3	DOCK9	13	99534136	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3240592	99534136	15635742	1347	27625											
DOCK9	23348	broad.mit.edu	37	chr13	99602012	99602012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgattgatgtgttcaccCcaggtgaggccatctccttg	11	11	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99602012	A	A	99602012	1	1	10	0	1	0	0	0	0	0	0	0	4734	638	22	2		2	DOCK9	13	99602012	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	67876	99602012	15567866	1348	27626											
TM9SF2	9375	broad.mit.edu	37	chr13	100169954	100169954	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgtaagtttttcagcttggCttttatataaaattttatgt	7	4	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100169954	G	G	100169954	1	3	10	0	1	0	0	0	0	0	0	0	16101	812	28	4		4	TM9SF2	13	100169954	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	567942	100169954	14999924	1349	27627											
NALCN	259232	broad.mit.edu	37	chr13	101712240	101712240	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgggtggtctcgatgctgGgcgggttcagaaaccggctc	17	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101712240	A	A	101712240	3	1	10	1	0	0	0	0	1	0	0	0	10242	1232	43	4	393	4	NALCN	13	101712240	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1542286	101712240	13457638	1350	27628											
NALCN	259232	broad.mit.edu	37	chr13	101833456	101833456	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaacactacttatcgaagaTtgtgagacaatgacagagag	10	7	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101833456	C	C	101833456	1	2	10	0	1	0	0	0	0	0	0	0	10242	1508	52	5		5	NALCN	13	101833456	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	121216	101833456	13336422	1351	27629											
NALCN	259232	broad.mit.edu	37	chr13	102029223	102029223	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacataaaacttacaaaaaActtcataaacttttcctctt	1	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102029223	T	T	102029223	1	4	10	0	1	0	0	0	0	0	0	0	10242	58	2	5		5	NALCN	13	102029223	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	195767	102029223	13140655	1352	27630											
FGF14	2259	broad.mit.edu	37	chr13	102375099	102375099	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcctgctgctcttcagCcacggagcaggaatgtctgg	11	12	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102375099	A	A	102375099	1	1	10	0	1	0	0	0	0	0	0	0	5900	754	26	3		3	FGF14	13	102375099	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	345876	102375099	12794779	1353	27631											
ERCC5	2073	broad.mit.edu	37	chr13	103492110	103492110	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcgtctgggccggtctttCagtgctagtttccatcagga	14	10	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103492110	T	T	103492110	2	4	10	1	0	0	0	0	0	0	0	1	5258	825	29	4		4	ERCC5	13	103492110	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1117011	103492110	11677768	1354	27632											
LIG4	3981	broad.mit.edu	37	chr13	108862284	108862284	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaatttttaaccacccttCacctcttttgtctggcttgt	4	11	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108862284	A	A	108862284	4	1	10	1	0	0	0	0	0	1	0	0	8855	835	29	3	1406	3	LIG4	13	108862284	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5370174	108862284	6307594	1355	27633											
MYO16	23026	broad.mit.edu	37	chr13	109445881	109445881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagtggatttgacctcaCtgcgccagatgaagcttcag	12	10	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109445881	A	A	109445881	3	1	10	1	0	0	0	0	1	0	0	0	10158	564	20	3	586	3	MYO16	13	109445881	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	583597	109445881	5723997	1356	27634											
MYO16	23026	broad.mit.edu	37	chr13	109535456	109535456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctgtgttcctcgctgcCtcctcacctcttctcctgtg	8	16	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109535456	A	A	109535456	3	1	10	1	0	0	0	0	1	0	0	0	10158	681	24	2	1455	2	MYO16	13	109535456	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	89575	109535456	5634422	1357	27635											
COL4A1	1282	broad.mit.edu	37	chr13	110813651	110813651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgatgcaaagttgcacaCgttgttaatattgcagaaca	9	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110813651	A	A	110813651	3	1	10	1	0	0	0	0	1	0	0	0	3721	536	19	3	497	3	COL4A1	13	110813651	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1278195	110813651	4356227	1358	27636											
COL4A1	1282	broad.mit.edu	37	chr13	110830136	110830136	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacttgagaatttcccaagTggcatcgagaaatagacaca	8	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110830136	C	C	110830136	1	2	10	0	1	0	0	0	0	0	0	0	3721	1711	59	5		5	COL4A1	13	110830136	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	16485	110830136	4339742	1359	27637											
COL4A1	1282	broad.mit.edu	37	chr13	110844719	110844719	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagactcaaaagcataaaaAtctgtataggaagtggatga	9	4	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110844719	T	T	110844719	1	4	10	0	1	0	0	0	0	0	0	0	3721	116	4	5		5	COL4A1	13	110844719	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	14583	110844719	4325159	1360	27638											
COL4A2	1284	broad.mit.edu	37	chr13	111009827	111009827	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttattgttgcagggtgtgaaGaagtttgatgtgccgtgtgg	16	3	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111009827	A	A	111009827	2	1	10	1	0	0	0	0	0	0	0	1	3722	933	33	4		4	COL4A2	13	111009827	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	165108	111009827	4160051	1361	27639											
COL4A2	1284	broad.mit.edu	37	chr13	111145440	111145440	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccccatgggtgaaataacGatgagtgacacccccatggg	11	12	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111145440	T	T	111145440	1	4	10	0	1	0	0	0	0	0	0	0	3722	1073	37	3		3	COL4A2	13	111145440	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	135613	111145440	4024438	1362	27640											
COL4A2	1284	broad.mit.edu	37	chr13	111145470	111145470	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccccatgggtgaaataacGatgagtgacacccccgcagg	11	13	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111145470	T	T	111145470	1	4	10	0	1	0	0	0	0	0	0	0	3722	1073	37	3		3	COL4A2	13	111145470	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	30	111145470	4024408	1363	27641											
MCF2L	23263	broad.mit.edu	37	chr13	113656327	113656327	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgcgggcgggtcctcgcctCcccggaaggtgttgtggggc	19	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113656327	T	T	113656327	1	4	10	0	1	0	0	0	0	0	0	0	9472	870	30	4		4	MCF2L	13	113656327	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2510857	113656327	1513551	1364	27642											
PROZ	8858	broad.mit.edu	37	chr13	113814287	113814287	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctctggaaagcagggccCtcggtgctcccagtcacctg	12	15	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113814287	G	G	113814287	1	3	10	0	1	0	0	0	0	0	0	0	12668	696	24	4		4	PROZ	13	113814287	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	157960	113814287	1355591	1365	27643											
CDC16	8881	broad.mit.edu	37	chr13	115002123	115002123	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttggtatgcagcaaCagtatcaaagtgctctattt	7	6	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115002123	T	T	115002123	4	4	10	1	0	0	0	0	0	1	0	0	3088	479	17	4	58	4	CDC16	13	115002123	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1187836	115002123	167755	1366	27644											
OR4Q3	441669	broad.mit.edu	37	chr14	20216413	20216413	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagatattctccttgttttAcacagtgattacacctatgt	5	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20216413	G	G	20216413	3	3	10	1	0	0	0	0	1	0	0	0	11175	391	14	5	829	5	OR4Q3	14	20216413	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08		20216413	87133127	1367	27645											
OR4N5	390437	broad.mit.edu	37	chr14	20612581	20612581	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgtataagggagcactcCtctgaaggaaagagcaaggc	13	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612581	A	A	20612581	2	1	10	1	0	0	0	0	0	0	0	1	11173	668	24	2		2	OR4N5	14	20612581	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	396168	20612581	86736959	1368	27646											
SLC39A2	29986	broad.mit.edu	37	chr14	21469627	21469627	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaccttcctgtatgtcacCttcctagaaattcttccacg	6	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21469627	T	T	21469627	2	4	10	1	0	0	0	0	0	0	0	1	14732	668	24	4		4	SLC39A2	14	21469627	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	857046	21469627	85879913	1369	27647											
NDRG2	57447	broad.mit.edu	37	chr14	21488034	21488034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcccaagcattcaagttcCctgctgctcccgtcgactct	7	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21488034	A	A	21488034	1	1	10	0	1	0	0	0	0	0	0	0	10347	638	22	2		2	NDRG2	14	21488034	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	18407	21488034	85861506	1370	27648											
METTL3	56339	broad.mit.edu	37	chr14	21969067	21969067	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaggtacctgaggtgggaaGagtcggtctgcactggaatc	15	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21969067	C	C	21969067	2	2	10	1	0	0	0	0	0	0	0	1	9594	929	33	4		4	METTL3	14	21969067	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	481033	21969067	85380473	1371	27649											
ABHD4	63874	broad.mit.edu	37	chr14	23079849	23079849	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggagatctgcgactcagttGattgagctgctctctgaaga	12	8	3	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23079849	A	A	23079849	3	1	10	1	0	0	0	0	1	0	0	0	84	1290	45	4	1050	4	ABHD4	14	23079849	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1110782	23079849	84269691	1372	27650											
PSMB5	5693	broad.mit.edu	37	chr14	23504054	23504054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaacccgcgctggttcaCcggtagcggtctctccaaca	10	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23504054	A	A	23504054	3	1	10	1	0	0	0	0	1	0	0	0	12786	507	18	3	855	3	PSMB5	14	23504054	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	424205	23504054	83845486	1373	27651											
MYH6	4624	broad.mit.edu	37	chr14	23872969	23872970	+	Missense_Mutation	DNP	GG	AT	AT													ctttccagtggccccaaagtGgatcctaatgaatttcccct							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	23872970	AT	AT	23872969	3	1	10	1	0	0	0	0	1	0	0	0	10132	1348	47	4	5189	4	MYH6	14	23872969	Missense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	368915	23872969	83476571	1374	27652											
MYH7	4625	broad.mit.edu	37	chr14	23882191	23882191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggggcctgctttgtgGgcaggtggaagcccctgtgg	21	8	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23882191	T	T	23882191	1	4	10	0	1	0	0	0	0	0	0	0	10133	1247	43	2		2	MYH7	14	23882191	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	9222	23882191	83467349	1375	27653											
PCK2	5106	broad.mit.edu	37	chr14	24567693	24567693	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctccacaggccgcaccaTgtatgtgcttccattcagca	7	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24567693	C	C	24567693	3	2	10	1	0	0	0	0	1	0	0	0	11676	1464	51	5	484	5	PCK2	14	24567693	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	685502	24567693	82781847	1376	27654											
ARHGAP5	394	broad.mit.edu	37	chr14	32562802	32562802	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagactgttttccctataAtaactaccctgattcagatg	6	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32562802	G	G	32562802	3	3	10	1	0	0	0	0	1	0	0	0	888	101	4	5	2929	5	ARHGAP5	14	32562802	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	7995109	32562802	74786738	1377	27655											
RALGAPA1	253959	broad.mit.edu	37	chr14	36147196	36147196	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaacagagtggtggagcttCtcgtcgagctgcagatcctt	13	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36147196	G	G	36147196	3	3	10	1	0	0	0	0	1	0	0	0	13121	912	32	4	3277	4	RALGAPA1	14	36147196	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3584394	36147196	71202344	1378	27656											
CTAGE5	4253	broad.mit.edu	37	chr14	39771326	39771326	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttttcccctttgttcaaTgtcaagactctgactgaacg	6	10	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39771326	G	G	39771326	1	3	10	0	1	0	0	0	0	0	0	0	4028	1479	51	5		5	CTAGE5	14	39771326	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3624130	39771326	67578214	1379	27657											
MDGA2	161357	broad.mit.edu	37	chr14	47426604	47426604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagctgcatctcccagCtccagcttcatttatgatgc	7	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47426604	A	A	47426604	3	1	10	1	0	0	0	0	1	0	0	0	9500	797	28	3	1051	3	MDGA2	14	47426604	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	7655278	47426604	59922936	1380	27658											
C14orf166	51637	broad.mit.edu	37	chr14	52471094	52471094	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacagatgcagttcttaatGaagctgctcaaattctgcga	8	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52471094	A	A	52471094	3	1	10	1	0	0	0	0	1	0	0	0	1769	1291	45	4	625	4	C14orf166	14	52471094	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5044490	52471094	54878446	1381	27659											
PTGDR	5729	broad.mit.edu	37	chr14	52735298	52735298	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgggagggaagcgtcccctCagcccctggaggagctggat	16	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52735298	T	T	52735298	4	4	10	1	0	0	0	0	0	1	0	0	12847	827	29	4	768	4	PTGDR	14	52735298	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	264204	52735298	54614242	1382	27660											
PTGDR	5729	broad.mit.edu	37	chr14	52735432	52735432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagactgtccggccgcggatGcggggcgggaagggtggagc	22	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52735432	T	T	52735432	1	4	10	0	1	0	0	0	0	0	0	0	12847	1334	46	3		3	PTGDR	14	52735432	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	134	52735432	54614108	1383	27661											
DDHD1	80821	broad.mit.edu	37	chr14	53525081	53525081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcagatgatgcgcccgCctcagcctcccaaagtgctg	10	16	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53525081	A	A	53525081	1	1	10	0	1	0	0	0	0	0	0	0	4359	754	26	3		3	DDHD1	14	53525081	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	789649	53525081	53824459	1384	27662											
CGRRF1	10668	broad.mit.edu	37	chr14	54997175	54997175	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaaattagacttcttatgGataaagtgttgctaacttat	7	4	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54997175	T	T	54997175	1	4	10	0	1	0	0	0	0	0	0	0	3336	1189	41	3		3	CGRRF1	14	54997175	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1472094	54997175	52352365	1385	27663											
FBXO34	55030	broad.mit.edu	37	chr14	55765524	55765524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaagcccgcggccctcCaggcactgaagcgtaagaag	11	13	0	2	rs118184339	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55765524	T	T	55765524	1	4	10	0	1	0	0	0	0	0	0	0	5801	609	21	4		4	FBXO34	14	55765524	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	768349	55765524	51584016	1386	27664											
MUDENG	55745	broad.mit.edu	37	chr14	57736068	57736068	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggctcataagccacgaAccgggaactccactttgtgg	12	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57736068	T	T	57736068	3	4	10	1	0	0	0	0	1	0	0	0	10077	40	2	5	38	5	MUDENG	14	57736068	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1970544	57736068	49613472	1387	27665											
ARID4A	5926	broad.mit.edu	37	chr14	58820404	58820404	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaaagcaaatgtgactctGaaggagaggaagatgaggaa	14	4	1	6			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58820404	A	A	58820404	3	1	10	1	0	0	0	0	1	0	0	0	921	1291	45	4	1746	4	ARID4A	14	58820404	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1084336	58820404	48529136	1388	27666											
DACT1	51339	broad.mit.edu	37	chr14	59112838	59112838	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccctgccccgccgcaggaGaacaaagttgtacagcccct	11	16	0	1	rs145184753		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59112838	A	A	59112838	2	1	10	1	0	0	0	0	0	0	0	1	4255	933	33	4		4	DACT1	14	59112838	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	292434	59112838	48236702	1389	27667											
DAAM1	23002	broad.mit.edu	37	chr14	59787180	59787180	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattaaaaaatagaatttgaAgaagtaacttctgttttctt	5	3	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59787180	G	G	59787180	1	3	10	0	1	0	0	0	0	0	0	0	4248	87	3	5		5	DAAM1	14	59787180	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	674342	59787180	47562360	1390	27668											
DAAM1	23002	broad.mit.edu	37	chr14	59822120	59822120	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggctcagatttatgcctctCtggtcctcctcagccttcat	7	14	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59822120	T	T	59822120	1	4	10	0	1	0	0	0	0	0	0	0	4248	928	32	4		4	DAAM1	14	59822120	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	34940	59822120	47527420	1391	27669											
C14orf39	317761	broad.mit.edu	37	chr14	60903733	60903733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaagaaaatgtaaagcCatcttctccttctggcttct	7	9	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60903733	A	A	60903733	3	1	10	1	0	0	0	0	1	0	0	0	1785	594	21	2	173	2	C14orf39	14	60903733	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1081613	60903733	46445807	1392	27670											
GPHN	10243	broad.mit.edu	37	chr14	67227367	67227367	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatctaaatgttataaaaacGttaaaaagaagcataatcct	4	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67227367	C	C	67227367	1	2	10	0	1	0	0	0	0	0	0	0	6675	1160	40	4		4	GPHN	14	67227367	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6323634	67227367	40122173	1393	27671											
GPHN	10243	broad.mit.edu	37	chr14	67577048	67577048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaaccattttctgcagtGtttgtgagattaacccagtt	7	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67577048	T	T	67577048	1	4	10	0	1	0	0	0	0	0	0	0	6675	1392	48	3		3	GPHN	14	67577048	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	349681	67577048	39772492	1394	27672											
RDH11	51109	broad.mit.edu	37	chr14	68159752	68159752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacagttgatgtacacaccCcactggacagcattttcctg	8	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68159752	T	T	68159752	3	4	10	1	0	0	0	0	1	0	0	0	13298	623	22	4	888	4	RDH11	14	68159752	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	582704	68159752	39189788	1395	27673											
ACTN1	87	broad.mit.edu	37	chr14	69360496	69360496	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagagagagtcacgaccagCcagccccagcagcaggggca	13	14	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69360496	G	G	69360496	1	3	10	0	1	0	0	0	0	0	0	0	204	754	26	4		4	ACTN1	14	69360496	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1200744	69360496	37989044	1396	27674											
DCAF5	8816	broad.mit.edu	37	chr14	69529104	69529104	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggggaaggtgcctcaccttGataatcttttctacaccaga	9	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69529104	A	A	69529104	2	1	10	1	0	0	0	0	0	0	0	1	4306	1280	45	4		4	DCAF5	14	69529104	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	168608	69529104	37820436	1397	27675											
GALNTL1	57452	broad.mit.edu	37	chr14	69791918	69791918	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatgaacttagacaagaAtaggattcaggtaggagcgc	11	7	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69791918	G	G	69791918	1	3	10	0	1	0	0	0	0	0	0	0	6283	116	4	5		5	GALNTL1	14	69791918	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	262814	69791918	37557622	1398	27676											
MAP3K9	4293	broad.mit.edu	37	chr14	71202793	71202793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcaatggagggcacatcCagctcagcctctcccacacc	9	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71202793	T	T	71202793	1	4	10	0	1	0	0	0	0	0	0	0	9349	609	21	4		4	MAP3K9	14	71202793	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1410875	71202793	36146747	1399	27677											
PCNX	22990	broad.mit.edu	37	chr14	71576130	71576130	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acataatttttcatcatcaaGaaaaaaatgaattggaaatg	5	4	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71576130	C	C	71576130	1	2	10	0	1	0	0	0	0	0	0	0	11685	957	33	4		4	PCNX	14	71576130	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	373337	71576130	35773410	1400	27678											
ENTPD5	957	broad.mit.edu	37	chr14	74439452	74439452	+	Intron	DEL	C	-	-													aagactctaagtcatttccaCccttttgttcgagtgactag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74439452	-	-	74439452	6	5	10	0	1	1	0	1	0	0	0	0	5184	522	18	0		0	ENTPD5	14	74439452	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	2863322	74439452	32910088	1401	27679											
ENTPD5	957	broad.mit.edu	37	chr14	74453414	74453414	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaagctgatctcacacatGatctcaatctcattagtgaa	6	9	3	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74453414	A	A	74453414	1	1	10	0	1	0	0	0	0	0	0	0	5184	1305	45	4		4	ENTPD5	14	74453414	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	13962	74453414	32896126	1402	27680											
LTBP2	4053	broad.mit.edu	37	chr14	74969961	74969961	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagagcacactgctggctccAggcctcgccgtcctggcagc	12	17	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74969961	T	T	74969961	3	4	10	1	0	0	0	0	1	0	0	0	9161	188	7	5	632	5	LTBP2	14	74969961	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	516547	74969961	32379579	1403	27681											
LTBP2	4053	broad.mit.edu	37	chr14	74977752	74977752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaagaggagaaaagggCcccaccctagctgattcaga	12	11	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74977752	A	A	74977752	1	1	10	0	1	0	0	0	0	0	0	0	9161	754	26	3		3	LTBP2	14	74977752	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	7791	74977752	32371788	1404	27682											
YLPM1	56252	broad.mit.edu	37	chr14	75295991	75295991	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccagcagaatggaggattAtcttcagctccccgatgatt	10	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75295991	G	G	75295991	3	3	10	1	0	0	0	0	1	0	0	0	17613	449	16	5	6313	5	YLPM1	14	75295991	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	318239	75295991	32053549	1405	27683											
DLST	1743	broad.mit.edu	37	chr14	75360126	75360126	+	Frame_Shift_Del	DEL	G	-	-													aggtctgcgttcagaacatcGggtaagcctctgaggaccac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75360126	-	-	75360126	7	5	10	1	0	1	0	1	0	0	0	0	4609	1130	39	0	705	0	DLST	14	75360126	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	64135	75360126	31989414	1406	27684											
ZDHHC22	283576	broad.mit.edu	37	chr14	77605913	77605913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggcgttggccgagaGgaataggaagagcgccccgt	17	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77605913	T	T	77605913	3	4	10	1	0	0	0	0	1	0	0	0	17739	1000	35	2	630	2	ZDHHC22	14	77605913	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2245787	77605913	29743627	1407	27685											
NRXN3	9369	broad.mit.edu	37	chr14	79270235	79270235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttctgattttcattgGtttgattgaattctttgttt	6	4	4	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79270235	T	T	79270235	1	4	10	0	1	0	0	0	0	0	0	0	10762	1276	44	3		3	NRXN3	14	79270235	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1664322	79270235	28079305	1408	27686											
EML5	161436	broad.mit.edu	37	chr14	89093342	89093342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatctggtcggaattctGccacaaaaatacgttgattg	9	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89093342	T	T	89093342	3	4	10	1	0	0	0	0	1	0	0	0	5142	1319	46	3	1393	3	EML5	14	89093342	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	9823107	89093342	18256198	1409	27687											
EML5	161436	broad.mit.edu	37	chr14	89131954	89131954	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggcaggaggactgccCgcggccaggaggttaagacc	17	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89131954	A	A	89131954	1	1	10	0	1	0	0	0	0	0	0	0	5142	667	23	1		1	EML5	14	89131954	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	38612	89131954	18217586	1410	27688											
TTC8	123016	broad.mit.edu	37	chr14	89338912	89338912	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctctagaatctgacaggcGtggatttgaatcccagctct	10	10	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89338912	A	A	89338912	1	1	10	0	1	0	0	0	0	0	0	0	16840	1160	40	4		4	TTC8	14	89338912	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	206958	89338912	18010628	1411	27689											
TDP1	55775	broad.mit.edu	37	chr14	90429553	90429553	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agacaagccatctacctcttCtcttctctgtgccaggcaag	7	14	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90429553	T	T	90429553	3	4	10	1	0	0	0	0	1	0	0	0	15850	913	32	4	97	4	TDP1	14	90429553	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1090641	90429553	16919987	1412	27690											
C14orf159	80017	broad.mit.edu	37	chr14	91670940	91670940	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgaaaatatatccagagcCaacctttttgccctcccaaa	4	13	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91670940	T	T	91670940	1	4	10	0	1	0	0	0	0	0	0	0	1768	609	21	4		4	C14orf159	14	91670940	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1241387	91670940	15678600	1413	27691											
CCDC88C	440193	broad.mit.edu	37	chr14	91779509	91779509	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccagctccttcagcttgCcggctgcgtccctgcagcgg	11	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91779509	T	T	91779509	3	4	10	1	0	0	0	0	1	0	0	0	2893	739	26	4	3499	4	CCDC88C	14	91779509	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	108569	91779509	15570031	1414	27692											
CATSPERB	79820	broad.mit.edu	37	chr14	92174456	92174456	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgaaagaatatatgaattCcattttacttctgtctgttg	7	5	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92174456	T	T	92174456	1	4	10	0	1	0	0	0	0	0	0	0	2717	870	30	4		4	CATSPERB	14	92174456	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	394947	92174456	15175084	1415	27693											
RIN3	79890	broad.mit.edu	37	chr14	93142837	93142837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggaagccctatggggcgGatgacttcctgcctgtgctc	14	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93142837	T	T	93142837	3	4	10	1	0	0	0	0	1	0	0	0	13484	1174	41	3	2383	3	RIN3	14	93142837	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	968381	93142837	14206703	1416	27694											
KIAA1409	57578	broad.mit.edu	37	chr14	93943857	93943857	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaagttagcctattttgTtaattgcaaaatattcagtg	7	4	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93943857	A	A	93943857	1	1	10	0	1	0	0	0	0	0	0	0	8300	1740	60	5		5	KIAA1409	14	93943857	5'Flank	SNP	T	TCGA-05-4397-01A-01D-1265-08	801020	93943857	13405683	1417	27695											
OTUB2	78990	broad.mit.edu	37	chr14	94505175	94505175	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaacgagggtgggaggctGaggggatagcagcctgaagg	20	5	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94505175	A	A	94505175	1	1	10	0	1	0	0	0	0	0	0	0	11406	1305	45	4		4	OTUB2	14	94505175	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	561318	94505175	12844365	1418	27696											
CLMN	79789	broad.mit.edu	37	chr14	95662857	95662857	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggaatgctgtagtcgcTactgtcttcttctaggtcat	11	8	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95662857	A	A	95662857	3	1	10	1	0	0	0	0	1	0	0	0	3574	1522	53	5	338	5	CLMN	14	95662857	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1157682	95662857	11686683	1419	27697											
TCL1B	9623	broad.mit.edu	37	chr14	96152706	96152706	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcccccactgccggccCgggccccacccacgccggag	11	25	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96152706	A	A	96152706	1	1	10	0	1	0	0	0	0	0	0	0	15827	667	23	1		1	TCL1B	14	96152706	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	489849	96152706	11196834	1420	27698											
DLK1	8788	broad.mit.edu	37	chr14	101200812	101200812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagttcacaggtctcacctGtgtcaagaagcgcgcgctga	12	12	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200812	T	T	101200812	3	4	10	1	0	0	0	0	1	0	0	0	4604	1377	48	3	749	3	DLK1	14	101200812	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	5048106	101200812	6148728	1421	27699											
RTL1	388015	broad.mit.edu	37	chr14	101349375	101349375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgattcagaaagatcatcgGatccgtctgagcttggctgg	12	9	3	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101349375	T	T	101349375	3	4	10	1	0	0	0	0	1	0	0	0	13835	1174	41	3	2329	3	RTL1	14	101349375	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	148563	101349375	6000165	1422	27700											
TECPR2	9895	broad.mit.edu	37	chr14	102900761	102900761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaatggtgaagtgaacgGtgtcccacaggaaaatactg	11	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102900761	T	T	102900761	3	4	10	1	0	0	0	0	1	0	0	0	15866	1261	44	3	1637	3	TECPR2	14	102900761	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1551386	102900761	4448779	1423	27701											
KIF26A	26153	broad.mit.edu	37	chr14	104643066	104643066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtgccaccacgctggGtgtgacaacgccagctgtgt	16	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104643066	T	T	104643066	3	4	10	1	0	0	0	0	1	0	0	0	8364	1261	44	3	3987	3	KIF26A	14	104643066	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1742305	104643066	2706474	1424	27702											
OR4M2	390538	broad.mit.edu	37	chr15	22369125	22369125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctgtgacatcacacagGttgtccggattgcctgtgcc	10	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22369125	T	T	22369125	3	4	10	1	0	0	0	0	1	0	0	0	11170	1261	44	3	552	3	OR4M2	15	22369125	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08		22369125	80162267	1425	27703											
CYFIP1	23191	broad.mit.edu	37	chr15	22955225	22955225	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggggcgagaaggaccccaAgagcggcttcgacataaaag	15	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22955225	G	G	22955225	3	3	10	1	0	0	0	0	1	0	0	0	4170	72	3	5	1673	5	CYFIP1	15	22955225	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	586100	22955225	79576167	1426	27704											
GABRA5	2558	broad.mit.edu	37	chr15	27193365	27193365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccggtgataaaaggagcCgcctctccaaaataaccggc	11	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27193365	A	A	27193365	2	1	10	1	0	0	0	0	0	0	0	1	6224	639	23	1		1	GABRA5	15	27193365	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	4238140	27193365	75338027	1427	27705											
HERC2	8924	broad.mit.edu	37	chr15	28362306	28362306	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttgatcgtttgacctggaGaggaggaagcaagcaagcgt	14	8	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28362306	T	T	28362306	1	4	10	0	1	0	0	0	0	0	0	0	7125	957	33	3		3	HERC2	15	28362306	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1168941	28362306	74169086	1428	27706											
TJP1	7082	broad.mit.edu	37	chr15	30010302	30010302	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatgggagcacctgaaggTttagatgctacttctggagg	14	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30010302	G	G	30010302	3	3	10	1	0	0	0	0	1	0	0	0	16052	1722	60	5	1377	5	TJP1	15	30010302	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1647996	30010302	72521090	1429	27707											
CHRM5	1133	broad.mit.edu	37	chr15	34356223	34356223	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgaaagagagtggtcctagtCaaagagaggaaagcagccca	13	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34356223	G	G	34356223	2	3	10	1	0	0	0	0	0	0	0	1	3411	813	29	4		4	CHRM5	15	34356223	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	4345921	34356223	68175169	1430	27708											
PGBD4	161779	broad.mit.edu	37	chr15	34396295	34396295	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacctcttcgtctgtctggAagacatttccccaagagcat	7	13	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34396295	G	G	34396295	2	3	10	1	0	0	0	0	0	0	0	1	11878	233	9	5		5	PGBD4	15	34396295	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	40072	34396295	68135097	1431	27709											
C15orf41	84529	broad.mit.edu	37	chr15	36911147	36911147	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaggaaccctgaaagttaAgttatgctgaagtgtgccag	11	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36911147	C	C	36911147	1	2	10	0	1	0	0	0	0	0	0	0	1808	87	3	5		5	C15orf41	15	36911147	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2514852	36911147	65620245	1432	27710											
DISP2	85455	broad.mit.edu	37	chr15	40659748	40659748	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggacctgggcctcaagcagGagctgctgaggcacttcctg	14	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40659748	A	A	40659748	3	1	10	1	0	0	0	0	1	0	0	0	4580	1175	41	4	1465	4	DISP2	15	40659748	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3748601	40659748	61871644	1433	27711											
RTF1	23168	broad.mit.edu	37	chr15	41771180	41771180	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctttgaggaaaaccccActagctgctgatgggtcggc	13	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41771180	G	G	41771180	1	3	10	0	1	0	0	0	0	0	0	0	13832	174	6	5		5	RTF1	15	41771180	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1111432	41771180	60760212	1434	27712											
DUOXA2	405753	broad.mit.edu	37	chr15	45408279	45408279	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccactctctaattccattTtcccaccctcatcccacccc	0	21	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45408279	A	A	45408279	1	1	10	0	1	0	0	0	0	0	0	0	4843	1856	64	5		5	DUOXA2	15	45408279	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3637099	45408279	57123113	1435	27713											
DUOX1	53905	broad.mit.edu	37	chr15	45454558	45454558	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaagtcatccgtcagctgcCaagtgttctgtaagaaggtg	11	9	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45454558	G	G	45454558	3	3	10	1	0	0	0	0	1	0	0	0	4840	595	21	4	4349	4	DUOX1	15	45454558	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	46279	45454558	57076834	1436	27714											
SLC28A2	9153	broad.mit.edu	37	chr15	45559991	45559991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggggtaaagctgccccGtgggtgagtccaaggaggca	19	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45559991	T	T	45559991	3	4	10	1	0	0	0	0	1	0	0	0	14646	1145	40	3	1238	3	SLC28A2	15	45559991	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	105433	45559991	56971401	1437	27715											
SHC4	399694	broad.mit.edu	37	chr15	49159963	49159963	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataactgttggttacttttTagagttggtatataccagct	8	5	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49159963	C	C	49159963	1	2	10	0	1	0	0	0	0	0	0	0	14386	1769	61	5		5	SHC4	15	49159963	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3599972	49159963	53371429	1438	27716											
SECISBP2L	9728	broad.mit.edu	37	chr15	49319461	49319461	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacacatgatagttcacttcCaaatcactccatgtgcatat	4	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49319461	G	G	49319461	1	3	10	0	1	0	0	0	0	0	0	0	14120	609	21	4		4	SECISBP2L	15	49319461	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	159498	49319461	53211931	1439	27717											
GLDN	342035	broad.mit.edu	37	chr15	51693743	51693743	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggactccctcccaagctgtGattgctggaggtaggtaaca	12	10	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51693743	T	T	51693743	1	4	10	0	1	0	0	0	0	0	0	0	6498	1305	45	3		3	GLDN	15	51693743	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2374282	51693743	50837649	1440	27718											
LEO1	123169	broad.mit.edu	37	chr15	52250861	52250861	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaggtaaaaaaatcactttCaaaagctcaagtttcaagtt	5	6	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52250861	T	T	52250861	1	4	10	0	1	0	0	0	0	0	0	0	8798	841	29	4		4	LEO1	15	52250861	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	557118	52250861	50280531	1441	27719											
BNIP2	663	broad.mit.edu	37	chr15	59970019	59970019	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtgttctgtacagggcTtatttactcttaataaacag	8	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59970019	C	C	59970019	1	2	10	0	1	0	0	0	0	0	0	0	1483	1624	56	5		5	BNIP2	15	59970019	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	7719158	59970019	42561373	1442	27720											
BNIP2	663	broad.mit.edu	37	chr15	59974604	59974604	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcttttaaaagcattgctCacatcggaaaatcttcatct	4	9	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59974604	G	G	59974604	1	3	10	0	1	0	0	0	0	0	0	0	1483	841	29	4		4	BNIP2	15	59974604	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4585	59974604	42556788	1443	27721											
VPS13C	54832	broad.mit.edu	37	chr15	62209737	62209737	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcaacatgcatctgacttCcctgctcctatgaagttctt	6	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62209737	T	T	62209737	3	4	10	1	0	0	0	0	1	0	0	0	17318	864	30	4	3535	4	VPS13C	15	62209737	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2235133	62209737	40321655	1444	27722											
VPS13C	54832	broad.mit.edu	37	chr15	62274822	62274822	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttacacatggttctttccaTattgtaaacttcaaagtttc	5	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62274822	C	C	62274822	1	2	10	0	1	0	0	0	0	0	0	0	17318	1421	49	5		5	VPS13C	15	62274822	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	65085	62274822	40256570	1445	27723											
VPS13C	54832	broad.mit.edu	37	chr15	62315920	62315920	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcatttcacattccaaatCagaaataaagtggcaatgtg	6	7	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62315920	A	A	62315920	1	1	10	0	1	0	0	0	0	0	0	0	17318	841	29	3		3	VPS13C	15	62315920	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	41098	62315920	40215472	1446	27724											
HERC1	8925	broad.mit.edu	37	chr15	63978479	63978479	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgattttttttcagtcttTctacacatttattataagaa	3	7	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63978479	C	C	63978479	1	2	10	0	1	0	0	0	0	0	0	0	7124	1798	62	5		5	HERC1	15	63978479	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1662559	63978479	38552913	1447	27725											
HERC1	8925	broad.mit.edu	37	chr15	64004880	64004880	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgaaaaaatttttatatgtCtaaaacaaacatattactta	2	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64004880	G	G	64004880	1	3	10	0	1	0	0	0	0	0	0	0	7124	928	32	4		4	HERC1	15	64004880	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	26401	64004880	38526512	1448	27726											
FAM96A	84191	broad.mit.edu	37	chr15	64365103	64365103	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaatatatcaaacaattAcaggccagtggctcttaaaa	5	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64365103	G	G	64365103	1	3	10	0	1	0	0	0	0	0	0	0	5711	406	14	5		5	FAM96A	15	64365103	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	360223	64365103	38166289	1449	27727											
IGDCC4	57722	broad.mit.edu	37	chr15	65677328	65677328	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagagcctgcagcaacagCgtctgcccagttccagcagg	11	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65677328	A	A	65677328	2	1	10	1	0	0	0	0	0	0	0	1	7639	755	27	3		3	IGDCC4	15	65677328	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1312225	65677328	36854064	1450	27728											
ISLR2	57611	broad.mit.edu	37	chr15	74425680	74425680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgtggctgcaggcctgGgccgcgagcacccgggtgtc	17	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74425680	T	T	74425680	3	4	10	1	0	0	0	0	1	0	0	0	7929	1241	43	2	587	2	ISLR2	15	74425680	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	8748352	74425680	28105712	1451	27729											
ISLR	3671	broad.mit.edu	37	chr15	74467991	74467991	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtggacgggcagccggcCcctcagcttcactggcacat	13	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74467991	A	A	74467991	2	1	10	1	0	0	0	0	0	0	0	1	7928	610	22	2		2	ISLR	15	74467991	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	42311	74467991	28063401	1452	27730											
SEMA7A	8482	broad.mit.edu	37	chr15	74703902	74703902	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccggccaacgtaccgttcGgagctgtagatggagatgca	13	11	0	2	rs145844323	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74703902	A	A	74703902	2	1	10	1	0	0	0	0	0	0	0	1	14156	1103	39	4		4	SEMA7A	15	74703902	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	235911	74703902	27827490	1453	27731											
RASGRF1	5923	broad.mit.edu	37	chr15	79317612	79317612	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaggacagcgcctgcatgAccctagctgggcagccccca	12	17	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79317612	T	T	79317612	1	4	10	0	1	0	0	0	0	0	0	0	13180	290	10	5		5	RASGRF1	15	79317612	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	4613710	79317612	23213780	1454	27732											
ARNT2	9915	broad.mit.edu	37	chr15	80767683	80767683	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcgggtggatcacgaggtCaggagatcaagaccatcctg	15	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80767683	T	T	80767683	1	4	10	0	1	0	0	0	0	0	0	0	970	841	29	4		4	ARNT2	15	80767683	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1450071	80767683	21763709	1455	27733											
EFTUD1	79631	broad.mit.edu	37	chr15	82422766	82422766	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgctccacaatctttTcttccacataaagccccttc	3	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82422766	A	A	82422766	3	1	10	1	0	0	0	0	1	0	0	0	5000	1783	62	5	55	5	EFTUD1	15	82422766	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1655083	82422766	20108626	1456	27734											
EFTUD1	79631	broad.mit.edu	37	chr15	82533764	82533764	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaaaatacaatttgtaaaCacacattttcagttgtccag	4	9	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82533764	T	T	82533764	1	4	10	0	1	0	0	0	0	0	0	0	5000	493	17	4		4	EFTUD1	15	82533764	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	110998	82533764	19997628	1457	27735											
FAM154B	283726	broad.mit.edu	37	chr15	82575200	82575200	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacatgaattgatcccaacaGagagttgcaaacctttaaat	6	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82575200	A	A	82575200	3	1	10	1	0	0	0	0	1	0	0	0	5510	943	33	4	1004	4	FAM154B	15	82575200	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	41436	82575200	19956192	1458	27736											
ABHD2	11057	broad.mit.edu	37	chr15	89679133	89679133	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaaggccgaaggaggcctCttgggtgcactgggatcctt	15	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89679133	G	G	89679133	1	3	10	0	1	0	0	0	0	0	0	0	82	928	32	4		4	ABHD2	15	89679133	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	7103933	89679133	12852259	1459	27737											
RHCG	51458	broad.mit.edu	37	chr15	90030080	90030080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagaagtggaaccagccCtgcatgagcagcgcccactg	12	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90030080	A	A	90030080	3	1	10	1	0	0	0	0	1	0	0	0	13435	680	24	2	1154	2	RHCG	15	90030080	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	350947	90030080	12501312	1460	27738											
ANPEP	290	broad.mit.edu	37	chr15	90328733	90328733	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcttgaactgctccagCtgccagaaaaacaaaagatt	6	11	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90328733	G	G	90328733	1	3	10	0	1	0	0	0	0	0	0	0	710	811	28	4		4	ANPEP	15	90328733	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	298653	90328733	12202659	1461	27739											
IQGAP1	8826	broad.mit.edu	37	chr15	91010643	91010643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtacagctggggagtgtgGctctggatgtcttctatctt	13	8	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91010643	T	T	91010643	1	4	10	0	1	0	0	0	0	0	0	0	7884	1218	42	3		3	IQGAP1	15	91010643	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	681910	91010643	11520749	1462	27740											
BLM	641	broad.mit.edu	37	chr15	91341688	91341688	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaacttgagtttctgaatAaaacttttaagtaacaaaag	5	4	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91341688	T	T	91341688	1	4	10	0	1	0	0	0	0	0	0	0	1451	377	13	5		5	BLM	15	91341688	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	331045	91341688	11189704	1463	27741											
CHD2	1106	broad.mit.edu	37	chr15	93492225	93492225	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtagctttaaagaaacaacCtgcatatttaggaggggaga	11	5	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93492225	G	G	93492225	3	3	10	1	0	0	0	0	1	0	0	0	3356	681	24	4	1467	4	CHD2	15	93492225	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2150537	93492225	9039167	1464	27742											
PCSK6	5046	broad.mit.edu	37	chr15	101888091	101888091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagcgcccggggttgaCaaatggaaggagctgtgttt	17	6	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101888091	T	T	101888091	1	4	10	0	1	0	0	0	0	0	0	0	11698	493	17	4		4	PCSK6	15	101888091	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	8395866	101888091	643301	1465	27743											
RAB11FIP3	9727	broad.mit.edu	37	chr16	538915	538915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcactttgaggactacGgtgaaggcagtgaggcggag	18	6	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	538915	T	T	538915	3	4	10	1	0	0	0	0	1	0	0	0	13003	1116	39	1	1217	1	RAB11FIP3	16	538915	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08		538915	89815838	1466	27744											
PRR25	388199	broad.mit.edu	37	chr16	855729	855729	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcccaaccagctcaggaaCagcgcagccgctcgcaaatg	10	16	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	855729	G	G	855729	3	3	10	1	0	0	0	0	1	0	0	0	12703	478	17	4	289	4	PRR25	16	855729	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	316814	855729	89499024	1467	27745											
TPSG1	25823	broad.mit.edu	37	chr16	1272110	1272110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcgtcctgaggacagagaAggcgagcattgggagccgag	17	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1272110	T	T	1272110	1	4	10	0	1	0	0	0	0	0	0	0	16550	87	3	5		5	TPSG1	16	1272110	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	416381	1272110	89082643	1468	27746											
BAIAP3	8938	broad.mit.edu	37	chr16	1394604	1394604	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctaggcttccttgcagccAggaccacagcgcctgcctgg	12	15	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1394604	G	G	1394604	2	3	10	1	0	0	0	0	0	0	0	1	1309	175	7	5		5	BAIAP3	16	1394604	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	122494	1394604	88960149	1469	27747											
GFER	2671	broad.mit.edu	37	chr16	2035896	2035896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccacccagacacccgcaCccgggcatgcttcacacagt	8	18	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2035896	T	T	2035896	3	4	10	1	0	0	0	0	1	0	0	0	6402	507	18	4	495	4	GFER	16	2035896	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	641292	2035896	88318857	1470	27748											
TSC2	7249	broad.mit.edu	37	chr16	2127477	2127477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgctcatctcacccgcGggatctctccatcctgaccc	6	17	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2127477	T	T	2127477	1	4	10	0	1	0	0	0	0	0	0	0	16731	1131	39	1		1	TSC2	16	2127477	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	91581	2127477	88227276	1471	27749											
PKD1	5310	broad.mit.edu	37	chr16	2169081	2169081	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatattgggggcctggggtcCagccaggaccccacccaaag	14	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2169081	G	G	2169081	1	3	10	0	1	0	0	0	0	0	0	0	12058	609	21	4		4	PKD1	16	2169081	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	41604	2169081	88185672	1472	27750											
ABCA3	21	broad.mit.edu	37	chr16	2333253	2333253	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagcaggttggtctcgatGaggaagagcaggatgaggta	17	4	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2333253	A	A	2333253	2	1	10	1	0	0	0	0	0	0	0	1	33	1277	45	4		4	ABCA3	16	2333253	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	164172	2333253	88021500	1473	27751											
PDPK1	5170	broad.mit.edu	37	chr16	2646042	2646042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagccacacgcgtaggcGgttagggcagtgcagaagca	17	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2646042	T	T	2646042	1	4	10	0	1	0	0	0	0	0	0	0	11781	1131	39	1		1	PDPK1	16	2646042	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	312789	2646042	87708711	1474	27752											
SRRM2	23524	broad.mit.edu	37	chr16	2809749	2809749	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgcccacggtgtgctaggCgctgcacagaccattcggaa	13	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2809749	T	T	2809749	1	4	10	0	1	0	0	0	0	0	0	0	15287	783	27	4		4	SRRM2	16	2809749	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	163707	2809749	87545004	1475	27753											
SRRM2	23524	broad.mit.edu	37	chr16	2815031	2815031	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccgaggagtcgttctccatCatccccagagctcaacaaca	8	15	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2815031	T	T	2815031	3	4	10	1	0	0	0	0	1	0	0	0	15287	838	29	4	4540	4	SRRM2	16	2815031	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	5282	2815031	87539722	1476	27754											
PRSS21	10942	broad.mit.edu	37	chr16	2871586	2871586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctcttctctgggctctcCcactcctggggccggtctga	10	17	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2871586	T	T	2871586	3	4	10	1	0	0	0	0	1	0	0	0	12724	623	22	4	947	4	PRSS21	16	2871586	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	56555	2871586	87483167	1477	27755											
MMP25	64386	broad.mit.edu	37	chr16	3108841	3108841	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccaggtgacacctacttCttcaagggcgcccactactg	8	16	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3108841	G	G	3108841	3	3	10	1	0	0	0	0	1	0	0	0	9756	912	32	4	1469	4	MMP25	16	3108841	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	237255	3108841	87245912	1478	27756											
OR2C1	4993	broad.mit.edu	37	chr16	3406108	3406108	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcctggaggcccggctccaTacacccatgtacttcttcct	8	17	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3406108	A	A	3406108	3	1	10	1	0	0	0	0	1	0	0	0	11086	1403	49	5	170	5	OR2C1	16	3406108	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	297267	3406108	86948645	1479	27757											
ADCY9	115	broad.mit.edu	37	chr16	4164582	4164582	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggcgtggatgcagccgtGgagcagccccctgctcagca	15	13	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4164582	A	A	4164582	3	1	10	1	0	0	0	0	1	0	0	0	301	1348	47	4	3239	4	ADCY9	16	4164582	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	758474	4164582	86190171	1480	27758											
A2BP1	54715	broad.mit.edu	37	chr16	7383194	7383194	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttttaatacaggaaaaaGccctcgcgtagtcagtgaga	9	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7383194	A	A	7383194	1	1	10	0	1	0	0	0	0	0	0	0	3	986	34	4		4	A2BP1	16	7383194	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3218612	7383194	82971559	1481	27759											
USP7	7874	broad.mit.edu	37	chr16	8988689	8988689	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcaggctctggattcgcttCatcacttctcgaaaatgctc	8	12	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8988689	A	A	8988689	3	1	10	1	0	0	0	0	1	0	0	0	17215	826	29	3	257	3	USP7	16	8988689	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1605495	8988689	81366064	1482	27760											
CIITA	4261	broad.mit.edu	37	chr16	10996666	10996666	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatctaccatggtgagtgCggggcctggctccccgacca	12	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10996666	T	T	10996666	1	4	10	0	1	0	0	0	0	0	0	0	3459	783	27	4		4	CIITA	16	10996666	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2007977	10996666	79358087	1483	27761											
PRM2	5620	broad.mit.edu	37	chr16	11370155	11370155	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggccgtggtgtccttgctCttgcccatgcaactgctgcc	11	14	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11370155	A	A	11370155	4	1	10	1	0	0	0	0	0	1	0	0	12639	922	32	3	243	3	PRM2	16	11370155	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	373489	11370155	78984598	1484	27762											
ERCC4	2072	broad.mit.edu	37	chr16	14013975	14013975	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcggcctactctccactagGagtcggcttccttcggctgc	10	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14013975	T	T	14013975	1	4	10	0	1	0	0	0	0	0	0	0	5257	1189	41	3		3	ERCC4	16	14013975	5'Flank	SNP	G	TCGA-05-4397-01A-01D-1265-08	2643820	14013975	76340778	1485	27763											
NPIP	9284	broad.mit.edu	37	chr16	15026672	15026672	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgaacctgacctccctccCgcgcctctgcagggctcagc	10	19	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15026672	T	T	15026672	1	4	10	0	1	0	0	0	0	0	0	0	10679	667	23	4		4	NPIP	16	15026672	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1012697	15026672	75328081	1486	27764											
ABCC1	4363	broad.mit.edu	37	chr16	16130398	16130398	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttaaacaaggaggacacGtcggaacaagtcgtgcctgt	11	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16130398	A	A	16130398	2	1	10	1	0	0	0	0	0	0	0	1	49	1132	40	4		4	ABCC1	16	16130398	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1103726	16130398	74224355	1487	27765											
SMG1	23049	broad.mit.edu	37	chr16	18864947	18864947	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatactcttcttccatcgTattaacagatggcagttcta	7	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18864947	G	G	18864947	3	3	10	1	0	0	0	0	1	0	0	0	14909	1638	57	5	6391	5	SMG1	16	18864947	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2734549	18864947	71489806	1488	27766											
C16orf62	57020	broad.mit.edu	37	chr16	19612957	19612957	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcctgaagagtgtgatActaacaccatctgtcctttt	7	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19612957	G	G	19612957	1	3	10	0	1	0	0	0	0	0	0	0	1839	406	14	5		5	C16orf62	16	19612957	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	748010	19612957	70741796	1489	27767											
GP2	2813	broad.mit.edu	37	chr16	20329700	20329700	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagttctggtcttggaagaGggccatcctgacaatgaact	12	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20329700	A	A	20329700	3	1	10	1	0	0	0	0	1	0	0	0	6647	1000	35	4	564	4	GP2	16	20329700	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	716743	20329700	70025053	1490	27768											
UMOD	7369	broad.mit.edu	37	chr16	20359605	20359605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccattattcgatttgcagtCctcgtctatactgcactcct	6	13	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20359605	A	A	20359605	3	1	10	1	0	0	0	0	1	0	0	0	17105	855	30	3	1041	3	UMOD	16	20359605	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	29905	20359605	69995148	1491	27769											
LOC81691	81691	broad.mit.edu	37	chr16	20826583	20826583	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcccaggttataatctgTagctcctaggttgatattgt	8	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20826583	C	C	20826583	1	2	10	0	1	0	0	0	0	0	0	0	8977	1653	57	5		5	LOC81691	16	20826583	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	466978	20826583	69528170	1492	27770											
LYRM1	57149	broad.mit.edu	37	chr16	20926814	20926814	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaactgtacatctgcctGgtgcctcctgtcaagttgca	8	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20926814	C	C	20926814	1	2	10	0	1	0	0	0	0	0	0	0	9207	1363	47	4		4	LYRM1	16	20926814	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	100231	20926814	69427939	1493	27771											
DNAH3	55567	broad.mit.edu	37	chr16	21071726	21071727	+	Intron	DNP	GG	TT	TT													gcagtcaaccaaagcccagaGggagggagagtgggcagaac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21071727	TT	TT	21071726	1	4	10	0	1	0	0	0	0	0	0	0	4643	1015	35	2		2	DNAH3	16	21071726	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	144912	21071726	69283027	1494	27772											
IGSF6	10261	broad.mit.edu	37	chr16	21654460	21654460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaatttcctgaaaaatacGccgagcactcttcttctata	5	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21654460	T	T	21654460	3	4	10	1	0	0	0	0	1	0	0	0	7673	1087	38	3	132	3	IGSF6	16	21654460	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	582734	21654460	68700293	1495	27773											
PALB2	79728	broad.mit.edu	37	chr16	23652427	23652427	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcccttcccgcacccccgGcaccttttccttctcctcac	4	24	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23652427	A	A	23652427	1	1	10	0	1	0	0	0	0	0	0	0	11500	1218	42	4		4	PALB2	16	23652427	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1997967	23652427	66702326	1496	27774											
RBBP6	5930	broad.mit.edu	37	chr16	24583448	24583448	+	Frame_Shift_Del	DEL	A	-	-													gcagttgtccaggtgggcatAagcaggaatcagagccacag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24583448	-	-	24583448	7	5	10	1	0	1	0	1	0	0	0	0	13211	352	13	0	5185	0	RBBP6	16	24583448	Frame_Shift_Del	DEL	A	TCGA-05-4397-01A-01D-1265-08	931021	24583448	65771305	1497	27775											
HS3ST4	9951	broad.mit.edu	37	chr16	26043928	26043928	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatctccattttctgcagGgttattcccctccttgccag	8	14	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26043928	A	A	26043928	1	1	10	0	1	0	0	0	0	0	0	0	7434	1247	43	4		4	HS3ST4	16	26043928	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1460480	26043928	64310825	1498	27776											
GTF3C1	2975	broad.mit.edu	37	chr16	27489951	27489951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttattggctaaagtgttGggagtgggagaaatgttaaa	13	2	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27489951	T	T	27489951	1	4	10	0	1	0	0	0	0	0	0	0	6937	1363	47	2		2	GTF3C1	16	27489951	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1446023	27489951	62864802	1499	27777											
IL27	246778	broad.mit.edu	37	chr16	28515337	28515337	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatccccagacaccagcttgAaccaggagcaagggaagcag	11	12	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28515337	G	G	28515337	2	3	10	1	0	0	0	0	0	0	0	1	7750	233	9	5		5	IL27	16	28515337	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	1025386	28515337	61839416	1500	27778											
NUPR1	26471	broad.mit.edu	37	chr16	28550293	28550293	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctgtctctgctttcctGgccccgggcctctccactcc	8	18	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28550293	A	A	28550293	1	1	10	0	1	0	0	0	0	0	0	0	10871	1363	47	4		4	NUPR1	16	28550293	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	34956	28550293	61804460	1501	27779											
SH2B1	25970	broad.mit.edu	37	chr16	28883956	28883956	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacttccgggtgcaccccatCcctttggagtcgggaggctc	12	15	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28883956	T	T	28883956	2	4	10	1	0	0	0	0	0	0	0	1	14340	845	30	4		4	SH2B1	16	28883956	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	333663	28883956	61470797	1502	27780											
ZNF689	115509	broad.mit.edu	37	chr16	30616690	30616690	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcggggtttgctgggcctcCggcctcgcttcccctttcgg	14	15	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30616690	T	T	30616690	3	4	10	1	0	0	0	0	1	0	0	0	18221	652	23	4	1108	4	ZNF689	16	30616690	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1732734	30616690	59738063	1503	27781											
FBRS	64319	broad.mit.edu	37	chr16	30677742	30677742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcccagtgtctcaggcatGttgggggtgagtggatgctg	17	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30677742	T	T	30677742	1	4	10	0	1	0	0	0	0	0	0	0	5764	1392	48	3		3	FBRS	16	30677742	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	61052	30677742	59677011	1504	27782											
ITGAD	3681	broad.mit.edu	37	chr16	31421741	31421741	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcctgggggctgtggGgagctttagctggtctggag	17	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31421741	A	A	31421741	3	1	10	1	0	0	0	0	1	0	0	0	7954	1232	43	4	1151	4	ITGAD	16	31421741	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	743999	31421741	58933012	1505	27783											
TGFB1I1	7041	broad.mit.edu	37	chr16	31485792	31485792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgtgagttgggcagtgGgccagtgtccatttgtggct	15	8	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31485792	T	T	31485792	1	4	10	0	1	0	0	0	0	0	0	0	15940	1247	43	2		2	TGFB1I1	16	31485792	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	64051	31485792	58868961	1506	27784											
MYLK3	91807	broad.mit.edu	37	chr16	46781676	46781676	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctccagggcacacgccCctgcatgaggaaatccgcca	9	17	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46781676	T	T	46781676	3	4	10	1	0	0	0	0	1	0	0	0	10152	623	22	4	2081	4	MYLK3	16	46781676	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	15295884	46781676	43573077	1507	27785											
DNAJA2	10294	broad.mit.edu	37	chr16	46992959	46992959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttttcaggaaactgcaCatcaaactttatgtaaagat	7	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46992959	A	A	46992959	3	1	10	1	0	0	0	0	1	0	0	0	4652	478	17	3	243	3	DNAJA2	16	46992959	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	211283	46992959	43361794	1508	27786											
PHKB	5257	broad.mit.edu	37	chr16	47497968	47497968	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctttgtttctgaaggttGatttcactataagatatcat	6	6	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47497968	T	T	47497968	1	4	10	0	1	0	0	0	0	0	0	0	11940	1305	45	3		3	PHKB	16	47497968	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	505009	47497968	42856785	1509	27787											
ABCC12	94160	broad.mit.edu	37	chr16	48119591	48119591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattttctgtgacttctgcCtgtaatttttctgggagttt	8	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48119591	A	A	48119591	3	1	10	1	0	0	0	0	1	0	0	0	52	680	24	2	350	2	ABCC12	16	48119591	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	621623	48119591	42235162	1510	27788											
BRD7	29117	broad.mit.edu	37	chr16	50359650	50359650	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtaatcagaatattaactgGaaactcacctgaaatcactt	5	8	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50359650	C	C	50359650	1	2	10	0	1	0	0	0	0	0	0	0	1514	1189	41	4		4	BRD7	16	50359650	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2240059	50359650	39995103	1511	27789											
RBL2	5934	broad.mit.edu	37	chr16	53513070	53513070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttattgtttgccaggtcaCaaaagaagataagtccttcc	7	9	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53513070	A	A	53513070	3	1	10	1	0	0	0	0	1	0	0	0	13218	478	17	3	2778	3	RBL2	16	53513070	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3153420	53513070	36841683	1512	27790											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53709056	53709056	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagagttgtgtttaagaaAaagagagacagaagtaaaaa	10	2	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53709056	T	T	53709056	1	4	10	0	1	0	0	0	0	0	0	0	13661	29	1	5		5	RPGRIP1L	16	53709056	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	195986	53709056	36645697	1513	27791											
MMP2	4313	broad.mit.edu	37	chr16	55519412	55519412	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actccatttgcttggaccagAgaggtgggaggggaggaaag	17	6	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55519412	G	G	55519412	1	3	10	0	1	0	0	0	0	0	0	0	9751	319	11	5		5	MMP2	16	55519412	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1810356	55519412	34835341	1514	27792											
GPR97	222487	broad.mit.edu	37	chr16	57713163	57713163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgagtgtgggacaaatGcatgtcaccaagctggctga	14	7	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57713163	T	T	57713163	3	4	10	1	0	0	0	0	1	0	0	0	6786	1319	46	3	585	3	GPR97	16	57713163	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2193751	57713163	32641590	1515	27793											
CDH11	1009	broad.mit.edu	37	chr16	65032652	65032652	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgatccaacgtcttggtGgcatgaatgttccctgattt	9	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65032652	T	T	65032652	2	4	10	1	0	0	0	0	0	0	0	1	3127	1335	47	2		2	CDH11	16	65032652	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	7319489	65032652	25322101	1516	27794											
DYNC1LI2	1783	broad.mit.edu	37	chr16	66770215	66770215	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgttagctttagaacactGaaaagaaggcaataataagc	8	6	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66770215	A	A	66770215	1	1	10	0	1	0	0	0	0	0	0	0	4885	1305	45	4		4	DYNC1LI2	16	66770215	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1737563	66770215	23584538	1517	27795											
CA7	766	broad.mit.edu	37	chr16	66880940	66880940	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccacctgcaggcccctcGcattggcacaagctgtatcc	8	18	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66880940	T	T	66880940	2	4	10	1	0	0	0	0	0	0	0	1	2548	1074	38	3		3	CA7	16	66880940	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	110725	66880940	23473813	1518	27796											
CES8	283848	broad.mit.edu	37	chr16	67040543	67040543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaatctgttatgctctccCaaatgaaagtcttctgctcc	5	13	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67040543	A	A	67040543	1	1	10	0	1	0	0	0	0	0	0	0	3303	609	21	2		2	CES8	16	67040543	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	159603	67040543	23314210	1519	27797											
ZDHHC1	29800	broad.mit.edu	37	chr16	67432712	67432712	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgagaataggcccggagCctaaactgaccttcaaagtg	13	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67432712	G	G	67432712	1	3	10	0	1	0	0	0	0	0	0	0	17726	754	26	4		4	ZDHHC1	16	67432712	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	392169	67432712	22922041	1520	27798											
DUS2L	54920	broad.mit.edu	37	chr16	68110456	68110456	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcatttctgcagctcctttCaggagctgagtagtgccctg	10	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68110456	G	G	68110456	1	3	10	0	1	0	0	0	0	0	0	0	4846	841	29	4		4	DUS2L	16	68110456	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	677744	68110456	22244297	1521	27799											
NFAT5	10725	broad.mit.edu	37	chr16	69726378	69726378	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttattacctggaagagctGaaagtgttcatccacagtct	8	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69726378	A	A	69726378	3	1	10	1	0	0	0	0	1	0	0	0	10455	1291	45	4	2700	4	NFAT5	16	69726378	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1615922	69726378	20628375	1522	27800											
WWP2	11060	broad.mit.edu	37	chr16	69833148	69833148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagaaatgaactgctagGcaccgcatctgtcaacctct	8	12	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69833148	T	T	69833148	3	4	10	1	0	0	0	0	1	0	0	0	17543	1203	42	3	300	3	WWP2	16	69833148	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	106770	69833148	20521605	1523	27801											
VAC14	55697	broad.mit.edu	37	chr16	70819711	70819711	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catagtagcgcagcctgctgTctgcatcattgaagcaggtc	11	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70819711	A	A	70819711	3	1	10	1	0	0	0	0	1	0	0	0	17238	1667	58	5	2099	5	VAC14	16	70819711	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	986563	70819711	19535042	1524	27802											
AP1G1	164	broad.mit.edu	37	chr16	71772696	71772696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actaaaaatgatatgcttccAtgaaccataagctacattat	4	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71772696	G	G	71772696	1	3	10	0	1	0	0	0	0	0	0	0	734	232	8	5		5	AP1G1	16	71772696	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	952985	71772696	18582057	1525	27803											
AP1G1	164	broad.mit.edu	37	chr16	71823475	71823475	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttaaatttttgactagtTtttaagaattcaagacttgc	5	5	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71823475	A	A	71823475	1	1	10	0	1	0	0	0	0	0	0	0	734	1856	64	5		5	AP1G1	16	71823475	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	50779	71823475	18531278	1526	27804											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555172	76555172	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggtatttttagagaactTggggattgctgattttatac	12	3	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76555172	A	A	76555172	4	1	10	1	0	0	0	0	0	1	0	0	3681	1821	63	5	2576	5	CNTNAP4	16	76555172	Nonsense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	4731697	76555172	13799581	1527	27805											
PKD1L2	114780	broad.mit.edu	37	chr16	81198331	81198331	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggttgcagagtctgcgGcatcagggcgcagggaggag	19	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81198331	C	C	81198331	3	2	10	1	0	0	0	0	1	0	0	0	12060	1203	42	4	4211	4	PKD1L2	16	81198331	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4643159	81198331	9156422	1528	27806											
PKD1L2	114780	broad.mit.edu	37	chr16	81232343	81232343	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgtgggagaaggttgcattGagtccagccacctcaaaggt	13	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81232343	C	C	81232343	2	2	10	1	0	0	0	0	0	0	0	1	12060	1277	45	4		4	PKD1L2	16	81232343	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	34012	81232343	9122410	1529	27807											
MPHOSPH6	10200	broad.mit.edu	37	chr16	82182933	82182933	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttctagccatctcttcatCtgacacatcaagctctactg	4	15	6	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82182933	A	A	82182933	3	1	10	1	0	0	0	0	1	0	0	0	9820	913	32	3	159	3	MPHOSPH6	16	82182933	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	950590	82182933	8171820	1530	27808											
MBTPS1	8720	broad.mit.edu	37	chr16	84099360	84099360	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttcgcgatgctgcaccctGacgcataatacactaggaaa	8	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84099360	A	A	84099360	3	1	10	1	0	0	0	0	1	0	0	0	9454	1294	45	4	816	4	MBTPS1	16	84099360	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1916427	84099360	6255393	1531	27809											
GINS2	51659	broad.mit.edu	37	chr16	85721135	85721135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttaatcgccagccacaGgggcacttccacgggtaaac	11	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85721135	T	T	85721135	3	4	10	1	0	0	0	0	1	0	0	0	6452	991	35	2	437	2	GINS2	16	85721135	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1621775	85721135	4633618	1532	27810											
CA5A	763	broad.mit.edu	37	chr16	87935551	87935551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggcaagatgtccaccagCctctgcagcgtctgatgatg	11	13	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87935551	A	A	87935551	3	1	10	1	0	0	0	0	1	0	0	0	2545	738	26	3	344	3	CA5A	16	87935551	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2214416	87935551	2419202	1533	27811											
CA5A	763	broad.mit.edu	37	chr16	87970183	87970183	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagaaactcatcccaaccCctgagcctaatggttaaagt	7	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87970183	T	T	87970183	1	4	10	0	1	0	0	0	0	0	0	0	2545	638	22	4		4	CA5A	16	87970183	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	34632	87970183	2384570	1534	27812											
RNF166	115992	broad.mit.edu	37	chr16	88765944	88765944	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgggtgactcccccagcctCtctgggatggggcactgcgc	14	16	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88765944	T	T	88765944	1	4	10	0	1	0	0	0	0	0	0	0	13568	928	32	4		4	RNF166	16	88765944	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	795761	88765944	1588809	1535	27813											
SPATA2L	124044	broad.mit.edu	37	chr16	89763699	89763699	+	3'UTR	DEL	G	-	-													ccagcaaagagaagcaccacGggagctgtctcccaagagcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89763699	-	-	89763699	6	5	10	0	1	1	0	1	0	0	0	0	15125	1131	39	0		0	SPATA2L	16	89763699	3'UTR	DEL	G	TCGA-05-4397-01A-01D-1265-08	997755	89763699	591054	1536	27814											
PRPF8	10594	broad.mit.edu	37	chr17	1563786	1563786	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaagtgagctcggaagatCtggatgagagagatcttcag	13	7	3	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1563786	A	A	1563786	3	1	10	1	0	0	0	0	1	0	0	0	12681	912	32	3	2338	3	PRPF8	17	1563786	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08		1563786	79631424	1537	27815											
TM4SF5	9032	broad.mit.edu	37	chr17	4686374	4686374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagagggaacctgcctgGtcctggctgcgttctcacct	12	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4686374	T	T	4686374	1	4	10	0	1	0	0	0	0	0	0	0	16094	1276	44	3		3	TM4SF5	17	4686374	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3122588	4686374	76508836	1538	27816											
CLEC10A	10462	broad.mit.edu	37	chr17	6979817	6979817	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttgtattttttttagtaGagacggggtttcaccatgtc	9	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6979817	C	C	6979817	1	2	10	0	1	0	0	0	0	0	0	0	3527	957	33	4		4	CLEC10A	17	6979817	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2293443	6979817	74215393	1539	27817											
TP53	7157	broad.mit.edu	37	chr17	7577537	7577537	+	Frame_Shift_Del	DEL	C	-	-													atgatggtgaggatgggcctCcggttcatgccgcccatgca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7577537	-	-	7577537	7	5	10	1	0	1	0	1	0	0	0	0	16505	842	30	0	546	0	TP53	17	7577537	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08	597720	7577537	73617673	1540	27818											
LSMD1	84316	broad.mit.edu	37	chr17	7760052	7760052	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtaagcgccatcgtggtcaGagatacggaggcccggtcag	16	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7760052	C	C	7760052	2	2	10	1	0	0	0	0	0	0	0	1	9149	929	33	4		4	LSMD1	17	7760052	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	182515	7760052	73435158	1541	27819											
KCNAB3	9196	broad.mit.edu	37	chr17	7830684	7830686	+	Missense_Mutation	TNP	CGG	AAA	AAA													tcctgctgcgtacacttcggCggtgtcaaacaggtttacac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAA	7830686	AAA	AAA	7830684	3	1	10	1	0	0	0	0	1	0	0	0	8081	768	27	3	876	3	KCNAB3	17	7830684	Missense_Mutation	TNP	CGG	TCGA-05-4397-01A-01D-1265-08	70632	7830684	73364526	1542	27820											
PIK3R5	23533	broad.mit.edu	37	chr17	8791421	8791421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccctaagcctcaggccCcagattccaccagcacaaca	9	17	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8791421	A	A	8791421	1	1	10	0	1	0	0	0	0	0	0	0	12017	638	22	2		2	PIK3R5	17	8791421	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	960737	8791421	72403789	1543	27821											
MYH13	8735	broad.mit.edu	37	chr17	10243657	10243657	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccaaccctgaacacggcCgacacggtctggaaagagga	11	13	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10243657	A	A	10243657	2	1	10	1	0	0	0	0	0	0	0	1	10126	639	23	1		1	MYH13	17	10243657	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	1452236	10243657	70951553	1544	27822											
MYH8	4626	broad.mit.edu	37	chr17	10300327	10300327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagttagccaggcagtcaGgagaatggccaagaccagaa	12	8	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10300327	A	A	10300327	1	1	10	0	1	0	0	0	0	0	0	0	10135	1015	35	4		4	MYH8	17	10300327	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	56670	10300327	70894883	1545	27823											
MYH4	4622	broad.mit.edu	37	chr17	10356737	10356737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcttaggataatgtcagcGtaagatggaaaatgagaacc	10	5	2	2	rs148255014	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10356737	T	T	10356737	1	4	10	0	1	0	0	0	0	0	0	0	10131	1160	40	3		3	MYH4	17	10356737	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	56410	10356737	70838473	1546	27824											
SCO1	6341	broad.mit.edu	37	chr17	10600752	10600752	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccccaaaactcgagtccgcGaggcaagaagcgccaaagtt	11	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10600752	C	C	10600752	3	2	10	1	0	0	0	0	1	0	0	0	14044	1058	37	4	856	4	SCO1	17	10600752	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	244015	10600752	70594458	1547	27825											
DNAH9	1770	broad.mit.edu	37	chr17	11604270	11604270	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtctcacttatcaccatcCcggattacgtaaacagcaca	7	13	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11604270	G	G	11604270	1	3	10	0	1	0	0	0	0	0	0	0	4648	638	22	4		4	DNAH9	17	11604270	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1003518	11604270	69590940	1548	27826											
TEKT3	64518	broad.mit.edu	37	chr17	15211847	15211847	+	Intron	DEL	C	-	-													ctcttctgcattcaacatctCcccattactaccattctcac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15211847	-	-	15211847	6	5	10	0	1	1	0	1	0	0	0	0	15876	870	30	0		0	TEKT3	17	15211847	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	3607577	15211847	65983363	1549	27827											
TRIM16	10626	broad.mit.edu	37	chr17	15580879	15580879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatctggggtggaaggacCcaagctcacccaaggagacc	12	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15580879	A	A	15580879	1	1	10	0	1	0	0	0	0	0	0	0	16615	638	22	2		2	TRIM16	17	15580879	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	369032	15580879	65614331	1550	27828											
PIGL	9487	broad.mit.edu	37	chr17	16203251	16203251	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggacacagagcacgtggccAgagtcctccttcagcacata	11	13	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16203251	G	G	16203251	3	3	10	1	0	0	0	0	1	0	0	0	11986	180	7	5	395	5	PIGL	17	16203251	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	622372	16203251	64991959	1551	27829											
FLCN	201163	broad.mit.edu	37	chr17	17127348	17127348	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtgatgatgctgtacCagcgctggaagcccctggcc	14	11	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17127348	T	T	17127348	4	4	10	1	0	0	0	0	0	1	0	0	5978	595	21	4	1427	4	FLCN	17	17127348	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	924097	17127348	64067862	1552	27830											
TOM1L2	146691	broad.mit.edu	37	chr17	17764829	17764829	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgattgtctagtgcagaagcAagtcctccgacagcctgagg	12	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17764829	G	G	17764829	2	3	10	1	0	0	0	0	0	0	0	1	16476	117	5	5		5	TOM1L2	17	17764829	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	637481	17764829	63430381	1553	27831											
ALDH3A2	224	broad.mit.edu	37	chr17	19554822	19554822	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagggccaagtgtatcataCttactctgcaagattaactg	8	9	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19554822	G	G	19554822	1	3	10	0	1	0	0	0	0	0	0	0	498	580	20	4		4	ALDH3A2	17	19554822	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1789993	19554822	61640388	1554	27832											
KCNJ12	3768	broad.mit.edu	37	chr17	21319012	21319012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccggctgagggccggggcCgcacaccctgtgtgatgcag	17	13	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21319012	A	A	21319012	3	1	10	1	0	0	0	0	1	0	0	0	8116	652	23	1	360	1	KCNJ12	17	21319012	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1764190	21319012	59876198	1555	27833											
WSB1	26118	broad.mit.edu	37	chr17	25621264	25621264	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggccttcgggagctttcccGaggcagttagcagaagccgc	14	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25621264	C	C	25621264	1	2	10	0	1	0	0	0	0	0	0	0	17531	1073	37	4		4	WSB1	17	25621264	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	4302252	25621264	55573946	1556	27834											
VTN	7448	broad.mit.edu	37	chr17	26694627	26694627	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcagctaaggacttctgGcctggctttctgtggtcact	12	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26694627	A	A	26694627	1	1	10	0	1	0	0	0	0	0	0	0	17364	1218	42	4		4	VTN	17	26694627	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1073363	26694627	54500583	1557	27835											
SEZ6	124925	broad.mit.edu	37	chr17	27296771	27296771	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccttcaactacccaggccTtaccttggtaatggaaatgg	8	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27296771	A	A	27296771	1	1	10	0	1	0	0	0	0	0	0	0	14255	1624	56	5		5	SEZ6	17	27296771	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	602144	27296771	53898439	1558	27836											
EVI2A	2123	broad.mit.edu	37	chr17	29645376	29645376	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcatcttttctttccCttgtagctgtgagcactcca	5	13	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29645376	G	G	29645376	3	3	10	1	0	0	0	0	1	0	0	0	5329	681	24	4	58	4	EVI2A	17	29645376	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2348605	29645376	51549834	1559	27837											
RAB11FIP4	84440	broad.mit.edu	37	chr17	29848854	29848854	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtactggggactcaagtAaagtcagctcagcagggtgg	15	7	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29848854	G	G	29848854	1	3	10	0	1	0	0	0	0	0	0	0	13004	377	13	5		5	RAB11FIP4	17	29848854	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	203478	29848854	51346356	1560	27838											
UTP6	55813	broad.mit.edu	37	chr17	30219711	30219711	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctggcatgaagcttaaagGgcagattaacaaaaagacgg	11	6	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30219711	A	A	30219711	1	1	10	0	1	0	0	0	0	0	0	0	17229	1247	43	4		4	UTP6	17	30219711	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	370857	30219711	50975499	1561	27839											
CCL14	6358	broad.mit.edu	37	chr17	34311533	34311533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggggccccttgttaaaGgccataccattggctgctcc	12	12	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34311533	T	T	34311533	1	4	10	0	1	0	0	0	0	0	0	0	2913	1015	35	2		2	CCL14	17	34311533	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	4091822	34311533	46883677	1562	27840											
GGNBP2	79893	broad.mit.edu	37	chr17	34935601	34935601	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacattgtgtttaaaacctGaacttgcagctgtgttatcc	8	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34935601	C	C	34935601	1	2	10	0	1	0	0	0	0	0	0	0	6423	1305	45	4		4	GGNBP2	17	34935601	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	624068	34935601	46259609	1563	27841											
TBC1D3	729873	broad.mit.edu	37	chr17	36352517	36352517	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaacctcagatggatggcCcacactgacctggcagacaa	9	13	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36352517	A	A	36352517	1	1	10	0	1	0	0	0	0	0	0	0	15739	638	22	2		2	TBC1D3	17	36352517	5'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08	1416916	36352517	44842693	1564	27842											
CDK12	51755	broad.mit.edu	37	chr17	37657618	37657618	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgaaacagctaatggaAggattggaatactgtcacaa	9	6	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37657618	C	C	37657618	3	2	10	1	0	0	0	0	1	0	0	0	3158	69	3	5	2557	5	CDK12	17	37657618	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1305101	37657618	43537592	1565	27843											
KRT24	192666	broad.mit.edu	37	chr17	38855631	38855631	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtctaagccctgagtcccAttttggttttataaaataaa	6	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38855631	T	T	38855631	1	4	10	0	1	0	0	0	0	0	0	0	8532	232	8	5		5	KRT24	17	38855631	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1198013	38855631	42339579	1566	27844											
TMEM99	147184	broad.mit.edu	37	chr17	38990925	38990925	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttggcctgctcccttcctCaagtattcttaaagccatgg	8	12	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38990925	G	G	38990925	3	3	10	1	0	0	0	0	1	0	0	0	16349	827	29	4	159	4	TMEM99	17	38990925	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	135294	38990925	42204285	1567	27845											
KRT35	3886	broad.mit.edu	37	chr17	39636931	39636931	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggactggtagtcagggcacAtgtaggggacctgctgctca	15	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39636931	T	T	39636931	3	4	10	1	0	0	0	0	1	0	0	0	8543	217	8	5	976	5	KRT35	17	39636931	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	646006	39636931	41558279	1568	27846											
KRT15	3866	broad.mit.edu	37	chr17	39674529	39674529	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaacactgacattagagctGtgtacagggtaccagccacc	10	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39674529	A	A	39674529	1	1	10	0	1	0	0	0	0	0	0	0	8523	1392	48	4		4	KRT15	17	39674529	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	37598	39674529	41520681	1569	27847											
TTC25	83538	broad.mit.edu	37	chr17	40095123	40095123	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgtctgagcccctggtctCtcagacctgcagatggtgtc	13	12	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40095123	G	G	40095123	1	3	10	0	1	0	0	0	0	0	0	0	16819	928	32	4		4	TTC25	17	40095123	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	420594	40095123	41100087	1570	27848											
DNAJC7	7266	broad.mit.edu	37	chr17	40142374	40142374	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcaggcaggggcaaattcTagggcacggtccatgcagaa	15	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40142374	C	C	40142374	2	2	10	1	0	0	0	0	0	0	0	1	4694	1509	53	5		5	DNAJC7	17	40142374	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	47251	40142374	41052836	1571	27849											
DHX58	79132	broad.mit.edu	37	chr17	40259975	40259975	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccactcccacatcctcgcctCcgccagaagggctgcccctc	7	22	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40259975	T	T	40259975	1	4	10	0	1	0	0	0	0	0	0	0	4554	870	30	4		4	DHX58	17	40259975	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	117601	40259975	40935235	1572	27850											
STAT3	6774	broad.mit.edu	37	chr17	40491337	40491337	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaacttgcatcacctgcaCtctcttccggacatcctgaa	6	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40491337	T	T	40491337	3	4	10	1	0	0	0	0	1	0	0	0	15384	565	20	4	1929	4	STAT3	17	40491337	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	231362	40491337	40703873	1573	27851											
DHX8	1659	broad.mit.edu	37	chr17	41597707	41597707	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcacatccttcggtctgTacaaaatcaggctgaggccg	9	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41597707	C	C	41597707	1	2	10	0	1	0	0	0	0	0	0	0	4555	1653	57	5		5	DHX8	17	41597707	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1106370	41597707	39597503	1574	27852											
HDAC5	10014	broad.mit.edu	37	chr17	42156375	42156375	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcctttttggacaaacgcAtactcagaaagcctggccat	9	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42156375	G	G	42156375	1	3	10	0	1	0	0	0	0	0	0	0	7077	232	8	5		5	HDAC5	17	42156375	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	558668	42156375	39038835	1575	27853											
ITGA2B	3674	broad.mit.edu	37	chr17	42462774	42462774	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgagcccggaggagggctgGgggacaggggcggggccttg	24	9	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42462774	C	C	42462774	1	2	10	0	1	0	0	0	0	0	0	0	7946	1247	43	4		4	ITGA2B	17	42462774	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	306399	42462774	38732436	1576	27854											
GPATCH8	23131	broad.mit.edu	37	chr17	42542096	42542096	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagaaaagctggctagTattttacatgggaagaacat	9	4	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42542096	C	C	42542096	1	2	10	0	1	0	0	0	0	0	0	0	6659	1653	57	5		5	GPATCH8	17	42542096	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	79322	42542096	38653114	1577	27855											
FZD2	2535	broad.mit.edu	37	chr17	42635929	42635929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctacaccatggtgtcGgtggcctacatcgcgggctt	14	12	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42635929	T	T	42635929	2	4	10	1	0	0	0	0	0	0	0	1	6190	1103	39	1		1	FZD2	17	42635929	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	93833	42635929	38559281	1578	27856											
EFTUD2	9343	broad.mit.edu	37	chr17	42971873	42971873	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataattcccaaactcatcaTataagtcggtatccatgatg	5	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42971873	C	C	42971873	3	2	10	1	0	0	0	0	1	0	0	0	5001	1406	49	5	3009	5	EFTUD2	17	42971873	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	335944	42971873	38223337	1579	27857											
PLCD3	113026	broad.mit.edu	37	chr17	43195901	43195901	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatcaggccacatagggatCccccatgtccagcttccaat	8	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43195901	A	A	43195901	1	1	10	0	1	0	0	0	0	0	0	0	12127	870	30	3		3	PLCD3	17	43195901	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	224028	43195901	37999309	1580	27858											
CRHR1	1394	broad.mit.edu	37	chr17	43910445	43910445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaagcactgtccctccCcatgccatcgaggtggacgc	11	16	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43910445	A	A	43910445	1	1	10	0	1	0	0	0	0	0	0	0	3903	638	22	2		2	CRHR1	17	43910445	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	714544	43910445	37284765	1581	27859											
GOSR2	9570	broad.mit.edu	37	chr17	45101926	45101926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttgaatgaaagcagagCagatcccaccatcttgaagt	10	8	1	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45101926	A	A	45101926	1	1	10	0	1	0	0	0	0	0	0	0	6642	725	25	3		3	GOSR2	17	45101926	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1191481	45101926	36093284	1582	27860											
OSBPL7	114881	broad.mit.edu	37	chr17	45891033	45891033	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcctcgcagagccgctgcaGagtgttgagcggctcgttga	14	12	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45891033	C	C	45891033	3	2	10	1	0	0	0	0	1	0	0	0	11376	933	33	4	1045	4	OSBPL7	17	45891033	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	789107	45891033	35304177	1583	27861											
OSBPL7	114881	broad.mit.edu	37	chr17	45891105	45891105	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgccgatgttgttgcgcaGaatgttccacaggctcacgt	11	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45891105	C	C	45891105	3	2	10	1	0	0	0	0	1	0	0	0	11376	933	33	4	1117	4	OSBPL7	17	45891105	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	72	45891105	35304105	1584	27862											
SKAP1	8631	broad.mit.edu	37	chr17	46474063	46474064	+	Missense_Mutation	DNP	CC	AG	AG													tggctttgatttgctgaaagCcccgtagaatatggtctctg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	46474064	AG	AG	46474063	3	1	10	1	0	0	0	0	1	0	0	0	14468	739	26	3	992	3	SKAP1	17	46474063	Missense_Mutation	DNP	CC	TCGA-05-4397-01A-01D-1265-08	582958	46474063	34721147	1585	27863											
HOXB3	3213	broad.mit.edu	37	chr17	46654468	46654468	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccagggaacacagcgtttCcctccctccctctcccgcca	6	20	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46654468	T	T	46654468	1	4	10	0	1	0	0	0	0	0	0	0	7369	870	30	4		4	HOXB3	17	46654468	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	180405	46654468	34540742	1586	27864											
HOXB7	3217	broad.mit.edu	37	chr17	46685385	46685385	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgcgtcaggtagcgattgTagtgaaattctttctccagc	11	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46685385	C	C	46685385	3	2	10	1	0	0	0	0	1	0	0	0	7373	1638	57	5	184	5	HOXB7	17	46685385	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	30917	46685385	34509825	1587	27865											
PDK2	5164	broad.mit.edu	37	chr17	48184161	48184161	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccttcctgcctgcagcccTcatctttgatggcagcacca	7	17	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48184161	C	C	48184161	3	2	10	1	0	0	0	0	1	0	0	0	11770	1551	54	5	539	5	PDK2	17	48184161	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1498776	48184161	33011049	1588	27866											
KIF2B	84643	broad.mit.edu	37	chr17	51900958	51900958	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccccaactacgaaatcatGcacatgatcgaagagtatcg	7	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51900958	T	T	51900958	3	4	10	1	0	0	0	0	1	0	0	0	8368	1319	46	3	566	3	KIF2B	17	51900958	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3716797	51900958	29294252	1589	27867											
STXBP4	252983	broad.mit.edu	37	chr17	53155296	53155296	+	Intron	DEL	C	-	-													aatatgcagttagttacatgCcccccaaaatcaaaacatat							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53155296	-	-	53155296	6	5	10	0	1	1	0	1	0	0	0	0	15473	754	26	0		0	STXBP4	17	53155296	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	1254338	53155296	28039914	1590	27868											
C17orf67	339210	broad.mit.edu	37	chr17	54893277	54893277	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtttatgctttgactaaCgggacttacggtatgatgct	10	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54893277	T	T	54893277	1	4	10	0	1	0	0	0	0	0	0	0	1891	551	19	4		4	C17orf67	17	54893277	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	1737981	54893277	26301933	1591	27869											
OR4D1	26689	broad.mit.edu	37	chr17	56232399	56232399	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catctcggattgacactcaaCaactcaacttaatcaactca	3	13	5	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56232399	G	G	56232399	1	3	10	0	1	0	0	0	0	0	0	0	11147	493	17	4		4	OR4D1	17	56232399	5'Flank	SNP	C	TCGA-05-4397-01A-01D-1265-08	1339122	56232399	24962811	1592	27870											
OR4D2	124538	broad.mit.edu	37	chr17	56247335	56247335	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatcttcttcttccactttTtgggaggtgccatggtcttc	9	10	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56247335	G	G	56247335	3	3	10	1	0	0	0	0	1	0	0	0	11150	1838	64	5	321	5	OR4D2	17	56247335	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	14936	56247335	24947875	1593	27871											
MPO	4353	broad.mit.edu	37	chr17	56355582	56355582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaactggatctccccctgCcctcaggacctctggtaccc	8	18	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56355582	T	T	56355582	1	4	10	0	1	0	0	0	0	0	0	0	9826	754	26	4		4	MPO	17	56355582	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	108247	56355582	24839628	1594	27872											
RNF43	54894	broad.mit.edu	37	chr17	56435120	56435120	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcaagctgggtgcacagTtgcatcctggggccgagagc	16	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56435120	C	C	56435120	3	2	10	1	0	0	0	0	1	0	0	0	13606	1725	60	5	342	5	RNF43	17	56435120	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	79538	56435120	24760090	1595	27873											
TEX14	56155	broad.mit.edu	37	chr17	56688799	56688799	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttccatatgatcctcatGgttaccaaggatccccattt	5	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56688799	A	A	56688799	1	1	10	0	1	0	0	0	0	0	0	0	15900	1363	47	4		4	TEX14	17	56688799	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	253679	56688799	24506411	1596	27874											
PRR11	55771	broad.mit.edu	37	chr17	57247240	57247240	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccaccaccctcaccagaaAggtaaggcttaatgtggaac	8	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57247240	T	T	57247240	4	4	10	1	0	0	0	0	0	1	0	0	12689	86	3	5	129	5	PRR11	17	57247240	Nonsense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	558441	57247240	23947970	1597	27875											
MED13	9969	broad.mit.edu	37	chr17	60130024	60130024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaaaagcagagtacggCattcataggaaagtccattc	9	8	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60130024	T	T	60130024	3	4	10	1	0	0	0	0	1	0	0	0	9523	710	25	4	6292	4	MED13	17	60130024	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2882784	60130024	21065186	1598	27876											
ACE	1636	broad.mit.edu	37	chr17	61557706	61557706	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacgcccccaggcttcacaGacacgggggcctactggcgc	12	18	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61557706	T	T	61557706	3	4	10	1	0	0	0	0	1	0	0	0	136	942	33	3	682	3	ACE	17	61557706	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1427682	61557706	19637504	1599	27877											
DDX42	11325	broad.mit.edu	37	chr17	61892812	61892812	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccttagcgtagtgctggctGaaaattaagcaaaagttccc	9	10	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61892812	A	A	61892812	1	1	10	0	1	0	0	0	0	0	0	0	4395	1305	45	4		4	DDX42	17	61892812	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	335106	61892812	19302398	1600	27878											
GH2	2689	broad.mit.edu	37	chr17	61958249	61958249	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggagctgcacgggctcCagccatgactggatgagcag	15	11	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958249	T	T	61958249	2	4	10	1	0	0	0	0	0	0	0	1	6432	581	21	4		4	GH2	17	61958249	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	65437	61958249	19236961	1601	27879											
GH1	2688	broad.mit.edu	37	chr17	61995647	61995647	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcttatttcccagCgggggaaagtcaccccttcc	7	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61995647	G	G	61995647	1	3	10	0	1	0	0	0	0	0	0	0	6431	783	27	4		4	GH1	17	61995647	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	37398	61995647	19199563	1602	27880											
SMURF2	64750	broad.mit.edu	37	chr17	62552157	62552157	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatactcgttaggcactaccCaggaaaattttaataaaaat	5	7	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62552157	T	T	62552157	1	4	10	0	1	0	0	0	0	0	0	0	14934	609	21	4		4	SMURF2	17	62552157	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	556510	62552157	18643053	1603	27881											
RGS9	8787	broad.mit.edu	37	chr17	63220917	63220917	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggctgggcgacaggcagGtccctggacaggaggcctct	17	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63220917	T	T	63220917	1	4	10	0	1	0	0	0	0	0	0	0	13422	1276	44	3		3	RGS9	17	63220917	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	668760	63220917	17974293	1604	27882											
BPTF	2186	broad.mit.edu	37	chr17	65960317	65960317	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaactcacatttccatttcGgatcttgcagattttatatt	5	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65960317	A	A	65960317	1	1	10	0	1	0	0	0	0	0	0	0	1504	1131	39	4		4	BPTF	17	65960317	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2739400	65960317	15234893	1605	27883											
ARSG	22901	broad.mit.edu	37	chr17	66381118	66381118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttattggaaactcagagaGgggttctcccagagactagc	13	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66381118	T	T	66381118	1	4	10	0	1	0	0	0	0	0	0	0	996	1015	35	2		2	ARSG	17	66381118	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	420801	66381118	14814092	1606	27884											
ABCA8	10351	broad.mit.edu	37	chr17	66928445	66928445	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaccagaacgctgaatcccGaagacccatcattgtcatca	6	14	4	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66928445	T	T	66928445	2	4	10	1	0	0	0	0	0	0	0	1	38	1057	37	3		3	ABCA8	17	66928445	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	547327	66928445	14266765	1607	27885											
ABCA9	10350	broad.mit.edu	37	chr17	66979867	66979867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctttcctgctgagcagcCtgggggaaaagcctcaggat	12	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66979867	A	A	66979867	3	1	10	1	0	0	0	0	1	0	0	0	39	680	24	2	267	2	ABCA9	17	66979867	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	51422	66979867	14215343	1608	27886											
MAP2K6	5608	broad.mit.edu	37	chr17	67513012	67513012	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagaccacctcgagatttaGactccaaggcttgcatttct	7	11	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67513012	T	T	67513012	3	4	10	1	0	0	0	0	1	0	0	0	9333	942	33	3	110	3	MAP2K6	17	67513012	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	533145	67513012	13682198	1609	27887											
FAM104A	84923	broad.mit.edu	37	chr17	71228443	71228443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtctgctccgcgccccccCatgtcgctgccgccgtggta	12	19	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71228443	A	A	71228443	3	1	10	1	0	0	0	0	1	0	0	0	5431	594	21	2	636	2	FAM104A	17	71228443	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3715431	71228443	9966767	1610	27888											
TTYH2	94015	broad.mit.edu	37	chr17	72248528	72248528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaccaggtgggctgcctaGtaaggaggggagcctcccac	14	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72248528	T	T	72248528	1	4	10	0	1	0	0	0	0	0	0	0	16866	1044	36	3		3	TTYH2	17	72248528	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1020085	72248528	8946682	1611	27889											
DNAI2	64446	broad.mit.edu	37	chr17	72285814	72285814	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttggcagtggcatactcCtgcttggattttcagcgggc	13	9	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72285814	A	A	72285814	2	1	10	1	0	0	0	0	0	0	0	1	4650	668	24	2		2	DNAI2	17	72285814	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	37286	72285814	8909396	1612	27890											
CD300LB	124599	broad.mit.edu	37	chr17	72522227	72522227	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaaacagcctggaaaacaGaatcccaagatacagctcat	8	10	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72522227	A	A	72522227	1	1	10	0	1	0	0	0	0	0	0	0	3029	957	33	4		4	CD300LB	17	72522227	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	236413	72522227	8672983	1613	27891											
KCTD2	23510	broad.mit.edu	37	chr17	73056446	73056446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggtgtccactggaaaaAtgtagtccttgatatttcta	9	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73056446	G	G	73056446	1	3	10	0	1	0	0	0	0	0	0	0	8177	116	4	5		5	KCTD2	17	73056446	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	534219	73056446	8138764	1614	27892											
CARD14	79092	broad.mit.edu	37	chr17	78175564	78175564	+	Frame_Shift_Del	DEL	C	-	-													ttgattacgaagcctcagagCccttgttcaaggcagtcctg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78175564	-	-	78175564	7	5	10	1	0	1	0	1	0	0	0	0	2672	739	26	0	2088	0	CARD14	17	78175564	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08	5119118	78175564	3019646	1615	27893											
PDE6G	5148	broad.mit.edu	37	chr17	79620334	79620334	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgggcggttccaggttcAtggtgaggctgacggagaca	16	9	1	3	rs150256730		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79620334	G	G	79620334	3	3	10	1	0	0	0	0	1	0	0	0	11743	217	8	5	273	5	PDE6G	17	79620334	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1444770	79620334	1574876	1616	27894											
FASN	2194	broad.mit.edu	37	chr17	80039971	80039971	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctctgtcccgcattgccaCgcccgcagctcacagaggag	11	16	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80039971	T	T	80039971	3	4	10	1	0	0	0	0	1	0	0	0	5740	536	19	4	1490	4	FASN	17	80039971	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	419637	80039971	1155239	1617	27895											
CLUL1	27098	broad.mit.edu	37	chr18	624746	624747	+	Intron	DNP	CC	TA	TA													gatctgacagctgcgaggcaCctgaaggagaaagaatgaaa							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	624747	TA	TA	624746	1	4	10	0	1	0	0	0	0	0	0	0	3602	522	18	4		4	CLUL1	18	624746	Intron	DNP	CC	TCGA-05-4397-01A-01D-1265-08		624746	77452502	1618	27896											
YES1	7525	broad.mit.edu	37	chr18	733068	733068	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcaatatctctactgtagtCatcagtgtcaattctttaaa	5	8	6	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	733068	A	A	733068	1	1	10	0	1	0	0	0	0	0	0	0	17601	841	29	3		3	YES1	18	733068	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	108322	733068	77344180	1619	27897											
LAMA1	284217	broad.mit.edu	37	chr18	7009334	7009334	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctcgcgtgacaggttttTcagaaacagagttaaaatat	8	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7009334	A	A	7009334	3	1	10	1	0	0	0	0	1	0	0	0	8677	1783	62	5	5470	5	LAMA1	18	7009334	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	6276266	7009334	71067914	1620	27898											
LAMA1	284217	broad.mit.edu	37	chr18	7036007	7036008	+	Frame_Shift_Ins	INS	-	A	A													taatgatgacgtcagcatgcINSgacatgaggttactgtctac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7036008	A	A	7036007	7	5	10	1	0	1	1	0	0	0	0	0	8677	755	27	0	7613	0	LAMA1	18	7036007	Frame_Shift_Ins	INS	-	TCGA-05-4397-01A-01D-1265-08	26673	7036007	71041241	1621	27899											
LAMA1	284217	broad.mit.edu	37	chr18	7038649	7038649	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgacctataaagaatcttGagaggcagacggctgccttt	10	9	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7038649	C	C	7038649	1	2	10	0	1	0	0	0	0	0	0	0	8677	1305	45	4		4	LAMA1	18	7038649	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2642	7038649	71038599	1622	27900											
PTPRM	5797	broad.mit.edu	37	chr18	7774262	7774262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgacttctgatccatggatGccatcaggtttgcttttagt	9	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7774262	T	T	7774262	3	4	10	1	0	0	0	0	1	0	0	0	12914	1319	46	3	195	3	PTPRM	18	7774262	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	735613	7774262	70302986	1623	27901											
FAM38B	63895	broad.mit.edu	37	chr18	10695994	10695994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccagcagttctgctgtGcaatgcatgcgagtatcacc	12	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10695994	T	T	10695994	1	4	10	0	1	0	0	0	0	0	0	0	5606	1334	46	3		3	FAM38B	18	10695994	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2921732	10695994	67381254	1624	27902											
CABYR	26256	broad.mit.edu	37	chr18	21736412	21736412	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagcaactgccagaacaaaTagttatcccttttactgatc	6	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21736412	C	C	21736412	3	2	10	1	0	0	0	0	1	0	0	0	2562	1406	49	5	957	5	CABYR	18	21736412	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	11040418	21736412	56340836	1625	27903											
ZNF521	25925	broad.mit.edu	37	chr18	22804911	22804911	+	Frame_Shift_Del	DEL	G	-	-													gagaggcatcttgcaaatccGgcagtttccagtatcaagac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22804911	-	-	22804911	7	5	10	1	0	1	0	1	0	0	0	0	18092	1115	39	0	984	0	ZNF521	18	22804911	Frame_Shift_Del	DEL	G	TCGA-05-4397-01A-01D-1265-08	1068499	22804911	55272337	1626	27904											
CDH2	1000	broad.mit.edu	37	chr18	25532316	25532316	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggtcattgtcagccgctTtaaggccctgcaatttggaa	12	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25532316	A	A	25532316	3	1	10	1	0	0	0	0	1	0	0	0	3135	1841	64	5	202	5	CDH2	18	25532316	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2727405	25532316	52544932	1627	27905											
DSC1	1823	broad.mit.edu	37	chr18	28728733	28728733	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagacccgtaactaagaaaTgatgcaatagagagataacc	8	7	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28728733	C	C	28728733	1	2	10	0	1	0	0	0	0	0	0	0	4805	1479	51	5		5	DSC1	18	28728733	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	3196417	28728733	49348515	1628	27906											
ASXL3	80816	broad.mit.edu	37	chr18	31325273	31325273	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctggcaccactccaaatgAgaaagcgagaaaaccacccc	7	15	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31325273	T	T	31325273	4	4	10	1	0	0	0	0	0	1	0	0	1072	296	11	5	5507	5	ASXL3	18	31325273	Nonsense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	2596540	31325273	46751975	1629	27907											
NOL4	8715	broad.mit.edu	37	chr18	31432983	31432983	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgccaattgtctcttcatGctgagatcagtgggtcctag	11	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31432983	A	A	31432983	2	1	10	1	0	0	0	0	0	0	0	1	10619	1310	46	4		4	NOL4	18	31432983	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	107710	31432983	46644265	1630	27908											
DTNA	1837	broad.mit.edu	37	chr18	32400876	32400876	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccactcaacttggctcacaTcgtgtgagtatccctaccct	7	15	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32400876	C	C	32400876	3	2	10	1	0	0	0	0	1	0	0	0	4828	1435	50	5	1028	5	DTNA	18	32400876	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	967893	32400876	45676372	1631	27909											
FHOD3	80206	broad.mit.edu	37	chr18	34192218	34192218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacctactgaatcagaaacTctgagggcccagcagaccat	9	12	2	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34192218	C	C	34192218	1	2	10	0	1	0	0	0	0	0	0	0	5940	1566	54	5		5	FHOD3	18	34192218	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1791342	34192218	43885030	1632	27910											
KIAA1328	57536	broad.mit.edu	37	chr18	34753035	34753035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccatcattacagcacaCcacctcccggtaagcttcag	5	17	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34753035	A	A	34753035	3	1	10	1	0	0	0	0	1	0	0	0	8295	507	18	3	1548	3	KIAA1328	18	34753035	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	560817	34753035	43324213	1633	27911											
RIT2	6014	broad.mit.edu	37	chr18	40695232	40695232	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcatcggtttaacagtcctGacactttggagcatcctgcc	9	12	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40695232	C	C	40695232	1	2	10	0	1	0	0	0	0	0	0	0	13498	1305	45	4		4	RIT2	18	40695232	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	5942197	40695232	37382016	1634	27912											
SLC14A2	8170	broad.mit.edu	37	chr18	43246075	43246075	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagtagaggtgtcctaactGatggtgctctttccttctaa	10	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43246075	A	A	43246075	1	1	10	0	1	0	0	0	0	0	0	0	14510	1305	45	4		4	SLC14A2	18	43246075	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2550843	43246075	34831173	1635	27913											
SLC14A2	8170	broad.mit.edu	37	chr18	43247870	43247870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgtttgtgaacaaccCcctcagcggcatcctcatca	8	13	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43247870	A	A	43247870	3	1	10	1	0	0	0	0	1	0	0	0	14510	623	22	2	1840	2	SLC14A2	18	43247870	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1795	43247870	34829378	1636	27914											
RAB27B	5874	broad.mit.edu	37	chr18	52546615	52546615	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggtttataatgcacaaGgaccgaatggatcttcaggg	11	7	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52546615	C	C	52546615	3	2	10	1	0	0	0	0	1	0	0	0	13023	1001	35	4	175	4	RAB27B	18	52546615	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	9298745	52546615	25530633	1637	27915											
NEDD4L	23327	broad.mit.edu	37	chr18	55992185	55992185	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgacctcttactcacagccGaagaaccaacctcataatcg	5	14	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55992185	C	C	55992185	1	2	10	0	1	0	0	0	0	0	0	0	10406	1073	37	4		4	NEDD4L	18	55992185	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	3445570	55992185	22085063	1638	27916											
ALPK2	115701	broad.mit.edu	37	chr18	56205026	56205026	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccattgcacacactgcttctCtgtcccttggctcatcacac	5	17	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56205026	G	G	56205026	3	3	10	1	0	0	0	0	1	0	0	0	545	913	32	4	4155	4	ALPK2	18	56205026	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	212841	56205026	21872222	1639	27917											
PIGN	23556	broad.mit.edu	37	chr18	59739950	59739950	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccataatccttgaccaagaaGaaaaaatgctgtaaaaaaaa	5	7	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59739950	A	A	59739950	2	1	10	1	0	0	0	0	0	0	0	1	11988	933	33	4		4	PIGN	18	59739950	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	3534924	59739950	18337298	1640	27918											
KIAA1468	57614	broad.mit.edu	37	chr18	59919955	59919955	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgttggaccaacacgtgtaGaagctgaacttttaccacag	9	9	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59919955	A	A	59919955	3	1	10	1	0	0	0	0	1	0	0	0	8306	943	33	4	1838	4	KIAA1468	18	59919955	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	180005	59919955	18157293	1641	27919											
SERPINB11	89778	broad.mit.edu	37	chr18	61390292	61390292	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcttctaacatgatggaaAgagaagttgaagtacacctc	9	8	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61390292	T	T	61390292	4	4	10	1	0	0	0	0	0	1	0	0	14211	64	3	5	864	5	SERPINB11	18	61390292	Nonsense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1470337	61390292	16686956	1642	27920											
SOCS6	9306	broad.mit.edu	37	chr18	67992312	67992312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcactacagtcccgcgccGtggcctctgcggcccacaaa	9	18	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67992312	T	T	67992312	2	4	10	1	0	0	0	0	0	0	0	1	15032	1132	40	3		3	SOCS6	18	67992312	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	6602020	67992312	10084936	1643	27921											
NETO1	81832	broad.mit.edu	37	chr18	70417719	70417719	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaaagtctgatttcctttgGacatactttttacgaggctg	8	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70417719	C	C	70417719	2	2	10	1	0	0	0	0	0	0	0	1	10434	1161	41	4		4	NETO1	18	70417719	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	2425407	70417719	7659529	1644	27922											
NETO1	81832	broad.mit.edu	37	chr18	70526213	70526213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggagaaaagccaaaaggtCcatctcgaacttcaatatga	8	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70526213	A	A	70526213	3	1	10	1	0	0	0	0	1	0	0	0	10434	855	30	3	1321	3	NETO1	18	70526213	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	108494	70526213	7551035	1645	27923											
ZNF236	7776	broad.mit.edu	37	chr18	74639891	74639891	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgacaatcagggacccaaGacctcactcaagtgatgact	8	11	3	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74639891	T	T	74639891	3	4	10	1	0	0	0	0	1	0	0	0	17915	942	33	3	4515	3	ZNF236	18	74639891	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	4113678	74639891	3437357	1646	27924											
ATP9B	374868	broad.mit.edu	37	chr18	76870662	76870662	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccatctgtgttcccaataAtcgctaaataattcatatgt	4	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76870662	G	G	76870662	1	3	10	0	1	0	0	0	0	0	0	0	1203	116	4	5		5	ATP9B	18	76870662	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2230771	76870662	1206586	1647	27925											
CTDP1	9150	broad.mit.edu	37	chr18	77489138	77489138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagagctctggtgtgcgGgcggattgctgagctgtgca	17	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77489138	T	T	77489138	1	4	10	0	1	0	0	0	0	0	0	0	4036	1247	43	2		2	CTDP1	18	77489138	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	618476	77489138	588110	1648	27926											
ODF3L2	284451	broad.mit.edu	37	chr19	474645	474645	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccagggtggccgtcccacAggacttcctcaggccggtct	12	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	474645	T	T	474645	3	4	10	1	0	0	0	0	1	0	0	0	10927	188	7	5	782	5	ODF3L2	19	474645	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08		474645	58654338	1649	27927											
AZU1	566	broad.mit.edu	37	chr19	830715	830715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccttccccagctggaccGtgaggccaacctcaccagca	8	17	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	830715	T	T	830715	3	4	10	1	0	0	0	0	1	0	0	0	1248	1145	40	3	382	3	AZU1	19	830715	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	356070	830715	58298268	1650	27928											
MAP2K2	5605	broad.mit.edu	37	chr19	4099265	4099265	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggctctccttcttccccgtCgaccacgggccggccaaaga	10	17	2	1	rs150369301		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4099265	T	T	4099265	3	4	10	1	0	0	0	0	1	0	0	0	9329	884	31	4	369	4	MAP2K2	19	4099265	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3268550	4099265	55029718	1651	27929											
SHD	56961	broad.mit.edu	37	chr19	4288274	4288274	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctgaacagggcggatgcaGagagcctcctgtccctctgc	12	15	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4288274	C	C	4288274	3	2	10	1	0	0	0	0	1	0	0	0	14388	943	33	4	769	4	SHD	19	4288274	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	189009	4288274	54840709	1652	27930											
TMEM146	257062	broad.mit.edu	37	chr19	5737339	5737339	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagcactttgggaggccgAggcaagaggattgctgaagc	15	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5737339	T	T	5737339	1	4	10	0	1	0	0	0	0	0	0	0	16183	319	11	5		5	TMEM146	19	5737339	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1449065	5737339	53391644	1653	27931											
TUBB4	10382	broad.mit.edu	37	chr19	6501606	6501606	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgcctgtggggtcgatgCcatgttcgtcactgataacc	12	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6501606	T	T	6501606	3	4	10	1	0	0	0	0	1	0	0	0	16884	739	26	4	1260	4	TUBB4	19	6501606	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	764267	6501606	52627377	1654	27932											
EMR1	2015	broad.mit.edu	37	chr19	6908736	6908736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataaataacatcttcagcGttctggacaaagtgtgtgaa	8	6	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6908736	T	T	6908736	3	4	10	1	0	0	0	0	1	0	0	0	5146	1145	40	3	1113	3	EMR1	19	6908736	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	407130	6908736	52220247	1655	27933											
EMR1	2015	broad.mit.edu	37	chr19	6908779	6908779	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaacgaccgtagtttctcTgaaggtaacgattgggtctt	10	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6908779	C	C	6908779	3	2	10	1	0	0	0	0	1	0	0	0	5146	1580	55	5	1156	5	EMR1	19	6908779	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	43	6908779	52220204	1656	27934											
ZNF358	140467	broad.mit.edu	37	chr19	7585855	7585855	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagacgccggcatcctcGggggcctggggaagttgtgt	18	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7585855	T	T	7585855	1	4	10	0	1	0	0	0	0	0	0	0	17993	1131	39	1		1	ZNF358	19	7585855	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	677076	7585855	51543128	1657	27935											
MCOLN1	57192	broad.mit.edu	37	chr19	7589950	7589950	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaccttcgccgtcgtctCaaatactttttcatgagtcc	7	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7589950	G	G	7589950	2	3	10	1	0	0	0	0	0	0	0	1	9488	813	29	4		4	MCOLN1	19	7589950	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	4095	7589950	51539033	1658	27936											
PNPLA6	10908	broad.mit.edu	37	chr19	7618919	7618919	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcggtcagtggggtgagggtCatgggtgggggctggcggtg	24	5	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7618919	T	T	7618919	1	4	10	0	1	0	0	0	0	0	0	0	12264	841	29	4		4	PNPLA6	19	7618919	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	28969	7618919	51510064	1659	27937											
LRRC8E	80131	broad.mit.edu	37	chr19	7963616	7963616	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatcagaggccccgtgccAgcaattgctgcctcggggga	13	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7963616	C	C	7963616	3	2	10	1	0	0	0	0	1	0	0	0	9112	188	7	5	215	5	LRRC8E	19	7963616	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	344697	7963616	51165367	1660	27938											
FBN3	84467	broad.mit.edu	37	chr19	8138167	8138167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtggggggcgacagggCacactcattctcatctgtgg	16	10	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8138167	A	A	8138167	3	1	10	1	0	0	0	0	1	0	0	0	5761	710	25	3	724	3	FBN3	19	8138167	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	174551	8138167	50990816	1661	27939											
FBN3	84467	broad.mit.edu	37	chr19	8148210	8148210	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccaaggctgttgatgcaCtccccatgagcacacaggtg	12	12	0	2	rs138737465		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8148210	T	T	8148210	2	4	10	1	0	0	0	0	0	0	0	1	5761	564	20	4		4	FBN3	19	8148210	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	10043	8148210	50980773	1662	27940											
MUC16	94025	broad.mit.edu	37	chr19	9005266	9005266	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggagtgtggataagagtCaagggggaggtagggggtca	22	2	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9005266	A	A	9005266	1	1	10	0	1	0	0	0	0	0	0	0	10067	841	29	3		3	MUC16	19	9005266	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	857056	9005266	50123717	1663	27941											
MUC16	94025	broad.mit.edu	37	chr19	9047974	9047974	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagatttgaaaacgcactGgtctctgacccagaactagt	9	9	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9047974	T	T	9047974	2	4	10	1	0	0	0	0	0	0	0	1	10067	1335	47	2		2	MUC16	19	9047974	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	42708	9047974	50081009	1664	27942											
MUC16	94025	broad.mit.edu	37	chr19	9067439	9067439	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcacttttctctgtggatacGatggggtcctgggaggtgct	15	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9067439	C	C	9067439	3	2	10	1	0	0	0	0	1	0	0	0	10067	1048	37	4	23844	4	MUC16	19	9067439	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	19465	9067439	50061544	1665	27943											
ZNF560	147741	broad.mit.edu	37	chr19	9580447	9580447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaaatggcaaacttttcCatgaaacagggactacgttt	8	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9580447	A	A	9580447	1	1	10	0	1	0	0	0	0	0	0	0	18118	609	21	2		2	ZNF560	19	9580447	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	513008	9580447	49548536	1666	27944											
KRI1	65095	broad.mit.edu	37	chr19	10668695	10668695	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgctggctccagtctcCctcctgctcaggcccgtccc	8	21	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10668695	T	T	10668695	3	4	10	1	0	0	0	0	1	0	0	0	8515	632	22	4	823	4	KRI1	19	10668695	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1088248	10668695	48460288	1667	27945											
QTRT1	81890	broad.mit.edu	37	chr19	10822729	10822729	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctgtctctgtctgtttctCtgactctctccctgagcgac	8	14	5	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10822729	G	G	10822729	1	3	10	0	1	0	0	0	0	0	0	0	12993	928	32	4		4	QTRT1	19	10822729	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	154034	10822729	48306254	1668	27946											
DOCK6	57572	broad.mit.edu	37	chr19	11348080	11348080	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaaggcaggtgactcgGgagtgcttctggggacagtg	19	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11348080	A	A	11348080	1	1	10	0	1	0	0	0	0	0	0	0	4731	1247	43	4		4	DOCK6	19	11348080	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	525351	11348080	47780903	1669	27947											
CCDC151	115948	broad.mit.edu	37	chr19	11545887	11545887	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttagggggataactaggagTcagtcgcccctgtcagggat	15	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11545887	A	A	11545887	1	1	10	0	1	0	0	0	0	0	0	0	2812	1682	58	5		5	CCDC151	19	11545887	5'UTR	SNP	T	TCGA-05-4397-01A-01D-1265-08	197807	11545887	47583096	1670	27948											
ASNA1	439	broad.mit.edu	37	chr19	12858371	12858371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctgcaagatgtgtgagGcccgtcacaagatccaggcc	12	13	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12858371	T	T	12858371	3	4	10	1	0	0	0	0	1	0	0	0	1051	1203	42	3	902	3	ASNA1	19	12858371	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1312484	12858371	46270612	1671	27949											
FARSA	2193	broad.mit.edu	37	chr19	13035003	13035003	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggcaatgaccgacacgttCtcgggaagccccatgggcag	13	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13035003	T	T	13035003	2	4	10	1	0	0	0	0	0	0	0	1	5736	912	32	4		4	FARSA	19	13035003	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	176632	13035003	46093980	1672	27950											
CD97	976	broad.mit.edu	37	chr19	14518875	14518875	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcaccagggctagcggGgctcaggcctctgggctctc	16	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14518875	A	A	14518875	1	1	10	0	1	0	0	0	0	0	0	0	3079	1247	43	4		4	CD97	19	14518875	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1483872	14518875	44610108	1673	27951											
EMR3	84658	broad.mit.edu	37	chr19	14730453	14730453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagggcagatgtggtcttctTtggcttagagtgggaagact	15	5	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14730453	C	C	14730453	1	2	10	0	1	0	0	0	0	0	0	0	5148	1856	64	5		5	EMR3	19	14730453	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	211578	14730453	44398530	1674	27952											
SLC1A6	6511	broad.mit.edu	37	chr19	15083604	15083604	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagggtcatggtctgcaggCgcaggcgcgtgcgcagtgct	18	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15083604	T	T	15083604	3	4	10	1	0	0	0	0	1	0	0	0	14549	768	27	4	1611	4	SLC1A6	19	15083604	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	353151	15083604	44045379	1675	27953											
BRD4	23476	broad.mit.edu	37	chr19	15350202	15350203	+	Splice_Site	DNP	CC	AA	AA													cccatggacctccatcccaaCctttttgggcgcaactggag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	15350203	AA	AA	15350202	5	1	10	1	0	0	0	0	0	0	1	0	1513	521	18	3	527	3	BRD4	19	15350202	Splice_Site	DNP	CC	TCGA-05-4397-01A-01D-1265-08	266598	15350202	43778781	1676	27954											
CYP4F2	8529	broad.mit.edu	37	chr19	16008518	16008518	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcagggacgggcagtgccGgaggtagagcagggagggct	22	7	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16008518	C	C	16008518	1	2	10	0	1	0	0	0	0	0	0	0	4221	1131	39	4		4	CYP4F2	19	16008518	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	658316	16008518	43120465	1677	27955											
TPM4	7171	broad.mit.edu	37	chr19	16204497	16204497	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctttcttcttatctaggctGagacccgtgctgaatttgca	8	11	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16204497	C	C	16204497	3	2	10	1	0	0	0	0	1	0	0	0	16532	1291	45	4	872	4	TPM4	19	16204497	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	195979	16204497	42924486	1678	27956											
RAB8A	4218	broad.mit.edu	37	chr19	16238849	16238849	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcacagctggccctcgactAtggaatcaagttcatggaga	10	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16238849	G	G	16238849	3	3	10	1	0	0	0	0	1	0	0	0	13064	449	16	5	450	5	RAB8A	19	16238849	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	34352	16238849	42890134	1679	27957											
AP1M1	8907	broad.mit.edu	37	chr19	16320065	16320066	+	Intron	DNP	GG	AT	AT													aaacacagcattttaaaactGgcaaagccccgagagccgtt							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	16320066	AT	AT	16320065	1	1	10	0	1	0	0	0	0	0	0	0	736	1363	47	4		4	AP1M1	19	16320065	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	81216	16320065	42808918	1680	27958											
EPS15L1	58513	broad.mit.edu	37	chr19	16551851	16551851	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtccccaggttgtcctgcaGatgaagaagccaattcagag	11	10	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16551851	C	C	16551851	1	2	10	0	1	0	0	0	0	0	0	0	5235	957	33	4		4	EPS15L1	19	16551851	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	231786	16551851	42577132	1681	27959											
C19orf44	84167	broad.mit.edu	37	chr19	16628152	16628152	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgacgtcttaacaaaaGgtatcccgtcctgtgtactc	9	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16628152	T	T	16628152	1	4	10	0	1	0	0	0	0	0	0	0	1946	1014	35	2		2	C19orf44	19	16628152	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	76301	16628152	42500831	1682	27960											
UNC13A	23025	broad.mit.edu	37	chr19	17738838	17738838	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagggaccttgggatggtttCagggtctgggtctggaggaa	18	6	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17738838	T	T	17738838	1	4	10	0	1	0	0	0	0	0	0	0	17110	841	29	4		4	UNC13A	19	17738838	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1110686	17738838	41390145	1683	27961											
FCHO1	23149	broad.mit.edu	37	chr19	17865786	17865786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactggggctgaattatctcAggggtcctggcatgctctta	12	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17865786	G	G	17865786	1	3	10	0	1	0	0	0	0	0	0	0	5844	203	7	5		5	FCHO1	19	17865786	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	126948	17865786	41263197	1684	27962											
UPF1	5976	broad.mit.edu	37	chr19	18958435	18958435	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttactgggattgttggggttGagtatgtgtttaatgaagaa	14	1	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18958435	C	C	18958435	1	2	10	0	1	0	0	0	0	0	0	0	17129	1305	45	4		4	UPF1	19	18958435	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1092649	18958435	40170548	1685	27963											
UPF1	5976	broad.mit.edu	37	chr19	18974852	18974852	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctccctcctgtctccagGgagagcccctggcacagtgt	11	16	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18974852	C	C	18974852	1	2	10	0	1	0	0	0	0	0	0	0	17129	1247	43	4		4	UPF1	19	18974852	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	16417	18974852	40154131	1686	27964											
ZNF714	148206	broad.mit.edu	37	chr19	21300980	21300980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacataggaaaattcagcagGgcatggtggctcatgcctgt	12	8	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21300980	T	T	21300980	3	4	10	1	0	0	0	0	1	0	0	0	18246	1232	43	2	1520	2	ZNF714	19	21300980	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2326128	21300980	37828003	1687	27965											
ZNF257	113835	broad.mit.edu	37	chr19	22255770	22255770	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtactcaattcctaataTactccaaaggctttattttt	3	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22255770	A	A	22255770	1	1	10	0	1	0	0	0	0	0	0	0	17926	1421	49	5		5	ZNF257	19	22255770	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	954790	22255770	36873213	1688	27966											
ZNF257	113835	broad.mit.edu	37	chr19	22271507	22271507	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagaaaccctacaaatgtGaagagtgtggcaaagccttt	11	7	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22271507	A	A	22271507	3	1	10	1	0	0	0	0	1	0	0	0	17926	1291	45	4	969	4	ZNF257	19	22271507	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	15737	22271507	36857476	1689	27967											
C19orf2	8725	broad.mit.edu	37	chr19	30502071	30502071	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagaagccaaacgtaaacGaaagaacagcactggcagtg	11	8	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30502071	A	A	30502071	3	1	10	1	0	0	0	0	1	0	0	0	1930	1058	37	4	1140	4	C19orf2	19	30502071	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	8230564	30502071	28626912	1690	27968											
ZNF536	9745	broad.mit.edu	37	chr19	30934685	30934685	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagaaggcccacgtgcccatGagcggccagcccatgggcag	15	14	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30934685	C	C	30934685	3	2	10	1	0	0	0	0	1	0	0	0	18101	1290	45	4	218	4	ZNF536	19	30934685	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	432614	30934685	28194298	1691	27969											
ZNF536	9745	broad.mit.edu	37	chr19	30935922	30935922	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acggcgtcccggagggggacAagcactccctcctgggatgc	15	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935922	T	T	30935922	4	4	10	1	0	0	0	0	0	1	0	0	18101	131	5	5	1455	5	ZNF536	19	30935922	Nonsense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1237	30935922	28193061	1692	27970											
ZNF536	9745	broad.mit.edu	37	chr19	30936282	30936282	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgaccctttagaaagcagtCgggattttttgtcacacggg	11	9	1	1	rs141248439		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30936282	A	A	30936282	2	1	10	1	0	0	0	0	0	0	0	1	18101	875	31	3		3	ZNF536	19	30936282	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	360	30936282	28192701	1693	27971											
DPY19L3	147991	broad.mit.edu	37	chr19	32899034	32899035	+	Intron	DNP	GG	CC	CC													catgctaatagagggaaaatGgcataagtaaaggcatttca							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	32899035	CC	CC	32899034	1	2	10	0	1	0	0	0	0	0	0	0	4782	1363	47	4		4	DPY19L3	19	32899034	Intron	DNP	GG	TCGA-05-4397-01A-01D-1265-08	1962752	32899034	26229949	1694	27972											
SLC7A10	56301	broad.mit.edu	37	chr19	33716539	33716539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcgccggggacggtccctGggactggggagggcgagggc	23	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33716539	A	A	33716539	3	1	10	1	0	0	0	0	1	0	0	0	14807	1348	47	4	1544	4	SLC7A10	19	33716539	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	817505	33716539	25412444	1695	27973											
SCGBL	284402	broad.mit.edu	37	chr19	35085417	35085417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttcttacccagctggaCgctgcagatcagagccagca	9	14	3	2	rs138254432	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35085417	A	A	35085417	3	1	10	1	0	0	0	0	1	0	0	0	14015	536	19	3	250	3	SCGBL	19	35085417	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1368878	35085417	24043566	1696	27974											
CD22	933	broad.mit.edu	37	chr19	35831693	35831693	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaggacctgtgcagatgccCgggacaggtagcgggagaag	17	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35831693	T	T	35831693	1	4	10	0	1	0	0	0	0	0	0	0	3015	667	23	4		4	CD22	19	35831693	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	746276	35831693	23297290	1697	27975											
SBSN	374897	broad.mit.edu	37	chr19	36014365	36014365	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctccaggtcatgtcagctGatgtgacaacggcgacatta	10	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36014365	T	T	36014365	1	4	10	0	1	0	0	0	0	0	0	0	13976	1305	45	3		3	SBSN	19	36014365	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	182672	36014365	23114618	1698	27976											
COX6B1	1340	broad.mit.edu	37	chr19	36145633	36145633	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtcttagcagaggggagtGtggtggcttggtgggagctc	21	5	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36145633	C	C	36145633	1	2	10	0	1	0	0	0	0	0	0	0	3808	1392	48	4		4	COX6B1	19	36145633	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	131268	36145633	22983350	1699	27977											
PRODH2	58510	broad.mit.edu	37	chr19	36303208	36303208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtcagggcccgaacagCaaagccccttcctgcgtcct	11	15	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36303208	A	A	36303208	1	1	10	0	1	0	0	0	0	0	0	0	12655	725	25	3		3	PRODH2	19	36303208	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	157575	36303208	22825775	1700	27978											
PAPL	390928	broad.mit.edu	37	chr19	39589816	39589816	+	Intron	DEL	T	-	-													aggggcgcgcgcagggacggTggggggcgcgcgcagggatg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39589816	-	-	39589816	6	5	10	0	1	1	0	1	0	0	0	0	11521	1711	59	0		0	PAPL	19	39589816	Intron	DEL	T	TCGA-05-4397-01A-01D-1265-08	3286608	39589816	19539167	1701	27979											
SUPT5H	6829	broad.mit.edu	37	chr19	39955488	39955488	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcatgtgaagggctacatCtacgtggaggcctacaagca	13	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39955488	G	G	39955488	3	3	10	1	0	0	0	0	1	0	0	0	15517	903	32	4	713	4	SUPT5H	19	39955488	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	365672	39955488	19173495	1702	27980											
C19orf47	126526	broad.mit.edu	37	chr19	40827997	40827997	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcagctgcgcccagtctcTtgatgatgctgactttagac	12	11	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40827997	C	C	40827997	3	2	10	1	0	0	0	0	1	0	0	0	1949	1609	56	5	211	5	C19orf47	19	40827997	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	872509	40827997	18300986	1703	27981											
SPTBN4	57731	broad.mit.edu	37	chr19	40995970	40995970	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccgatcgcccaccgcccCtgtcgccctagcccaggccc	8	25	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40995970	G	G	40995970	1	3	10	0	1	0	0	0	0	0	0	0	15239	696	24	4		4	SPTBN4	19	40995970	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	167973	40995970	18133013	1704	27982											
SPTBN4	57731	broad.mit.edu	37	chr19	41026137	41026137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacagggacatgcggggGtggggaggagggtgtttcct	22	5	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41026137	T	T	41026137	1	4	10	0	1	0	0	0	0	0	0	0	15239	1276	44	3		3	SPTBN4	19	41026137	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	30167	41026137	18102846	1705	27983											
PSG1	5669	broad.mit.edu	37	chr19	43351978	43351978	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accatgagtctcccatgacaGgagcagcctcttttctccta	7	14	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43351978	A	A	43351978	1	1	10	0	1	0	0	0	0	0	0	0	12759	1015	35	4		4	PSG1	19	43351978	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2325841	43351978	15777005	1706	27984											
ZFP112	7771	broad.mit.edu	37	chr19	44834051	44834051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaagtagcttactgttaCttcctgaatactctccatct	6	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44834051	A	A	44834051	3	1	10	1	0	0	0	0	1	0	0	0	17764	565	20	3	2468	3	ZFP112	19	44834051	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1482073	44834051	14294932	1707	27985											
TRAPPC6A	79090	broad.mit.edu	37	chr19	45667459	45667460	+	Frame_Shift_Ins	INS	-	T	T													atactgcaggccagaggccaINStcgggaggaggagggggaag							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45667460	T	T	45667459	7	5	10	1	0	1	1	0	0	0	0	0	16587	217	8	0	174	0	TRAPPC6A	19	45667459	Frame_Shift_Ins	INS	-	TCGA-05-4397-01A-01D-1265-08	833408	45667459	13461524	1708	27986											
NAPA	8775	broad.mit.edu	37	chr19	47996348	47996348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggtggcggtccctgcgGggctggggcaggcaggaagg	22	8	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47996348	T	T	47996348	1	4	10	0	1	0	0	0	0	0	0	0	10255	1247	43	2		2	NAPA	19	47996348	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2328889	47996348	11132635	1709	27987											
RUVBL2	10856	broad.mit.edu	37	chr19	49518853	49518853	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaagtgcaggtggatgacAtcaagcgggtctactcactc	12	10	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49518853	G	G	49518853	3	3	10	1	0	0	0	0	1	0	0	0	13864	217	8	5	1330	5	RUVBL2	19	49518853	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1522505	49518853	9610130	1710	27988											
SLC6A16	28968	broad.mit.edu	37	chr19	49793479	49793479	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttagctggtgacttagGggtagggatgtggaggctgt	20	3	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49793479	T	T	49793479	2	4	10	1	0	0	0	0	0	0	0	1	14793	1219	43	2		2	SLC6A16	19	49793479	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	274626	49793479	9335504	1711	27989											
CD37	951	broad.mit.edu	37	chr19	49840114	49840114	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctaggtgggaaatggggCtgcctggagctgtgccacac	16	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49840114	T	T	49840114	1	4	10	0	1	0	0	0	0	0	0	0	3038	812	28	4		4	CD37	19	49840114	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	46635	49840114	9288869	1712	27990											
SLC17A7	57030	broad.mit.edu	37	chr19	49934226	49934226	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacgtggtcagttaggtacGaagcacacacttggaggcag	13	10	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49934226	A	A	49934226	1	1	10	0	1	0	0	0	0	0	0	0	14535	1073	37	4		4	SLC17A7	19	49934226	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	94112	49934226	9194757	1713	27991											
FLT3LG	2323	broad.mit.edu	37	chr19	49979648	49979648	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagcagccccgtgcccagctCctccctcagacccgtgggtt	10	19	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49979648	G	G	49979648	1	3	10	0	1	0	0	0	0	0	0	0	6001	870	30	4		4	FLT3LG	19	49979648	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	45422	49979648	9149335	1714	27992											
JOSD2	126119	broad.mit.edu	37	chr19	51013625	51013625	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcgtggacagcacacagctCcaggcgctgccgttcgtggt	15	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51013625	G	G	51013625	3	3	10	1	0	0	0	0	1	0	0	0	8029	864	30	4	518	4	JOSD2	19	51013625	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1033977	51013625	8115358	1715	27993											
SHANK1	50944	broad.mit.edu	37	chr19	51200330	51200330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccctcctgaccccatccCctccctgcccctcgcctctc	3	26	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51200330	A	A	51200330	1	1	10	0	1	0	0	0	0	0	0	0	14377	638	22	2		2	SHANK1	19	51200330	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	186705	51200330	7928653	1716	27994											
SHANK1	50944	broad.mit.edu	37	chr19	51219627	51219627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgcggccggaggtggccgGttggaacaggccatagttga	17	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51219627	T	T	51219627	3	4	10	1	0	0	0	0	1	0	0	0	14377	1261	44	3	6209	3	SHANK1	19	51219627	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	19297	51219627	7909356	1717	27995											
SIGLEC8	27181	broad.mit.edu	37	chr19	51958044	51958044	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttgaggtgcctgcagatgGattggagttgctttggggat	16	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51958044	T	T	51958044	1	4	10	0	1	0	0	0	0	0	0	0	14427	1189	41	3		3	SIGLEC8	19	51958044	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	738417	51958044	7170939	1718	27996											
ZNF175	7728	broad.mit.edu	37	chr19	52076350	52076350	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctcagtgccctcaggaaaTatttgtggagtgaatgttga	11	7	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52076350	C	C	52076350	1	2	10	0	1	0	0	0	0	0	0	0	17871	1421	49	5		5	ZNF175	19	52076350	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	118306	52076350	7052633	1719	27997											
ZNF841	284371	broad.mit.edu	37	chr19	52568469	52568469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgtttagtgaggcctgagCgactaatgtaagatttgcca	12	6	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52568469	T	T	52568469	3	4	10	1	0	0	0	0	1	0	0	0	18318	768	27	4	112	4	ZNF841	19	52568469	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	492119	52568469	6560514	1720	27998											
ZNF761	388561	broad.mit.edu	37	chr19	53958024	53958024	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatggagatttttgctaccAggatgttgataaagatattc	9	5	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53958024	T	T	53958024	3	4	10	1	0	0	0	0	1	0	0	0	18265	188	7	5	274	5	ZNF761	19	53958024	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1389555	53958024	5170959	1721	27999											
ZNF761	388561	broad.mit.edu	37	chr19	53960363	53960363	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaagcctttagtaggcaGtcaacacttgtttaccgtca	9	10	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53960363	C	C	53960363	1	2	10	0	1	0	0	0	0	0	0	0	18265	1044	36	4		4	ZNF761	19	53960363	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	2339	53960363	5168620	1722	28000											
TTYH1	57348	broad.mit.edu	37	chr19	54947234	54947234	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagccaattcccactccatTccctcctctcccccgctacc	2	22	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54947234	A	A	54947234	1	1	10	0	1	0	0	0	0	0	0	0	16865	1798	62	5		5	TTYH1	19	54947234	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	986871	54947234	4181749	1723	28001											
KIR3DL1	3811	broad.mit.edu	37	chr19	55354216	55354216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccctggactcccagggcCcaatgttagataacagagtg	11	11	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55354216	A	A	55354216	1	1	10	0	1	0	0	0	0	0	0	0	8391	638	22	2		2	KIR3DL1	19	55354216	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	406982	55354216	3774767	1724	28002											
SAPS1	22870	broad.mit.edu	37	chr19	55743224	55743224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctctgagtggggaggCcctggggcacactgaggggc	19	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55743224	A	A	55743224	3	1	10	1	0	0	0	0	1	0	0	0	13948	739	26	3	417	3	SAPS1	19	55743224	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	389008	55743224	3385759	1725	28003											
NLRP13	126204	broad.mit.edu	37	chr19	56419039	56419039	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggaacattctcctttgctCatccttctctgtctcctttt	4	13	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56419039	A	A	56419039	1	1	10	0	1	0	0	0	0	0	0	0	10570	841	29	3		3	NLRP13	19	56419039	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	675815	56419039	2709944	1726	28004											
NLRP5	126206	broad.mit.edu	37	chr19	56531812	56531812	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaggtgaggaaaatagaTgtattccttggttgccctcc	10	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56531812	C	C	56531812	1	2	10	0	1	0	0	0	0	0	0	0	10575	1479	51	5		5	NLRP5	19	56531812	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	112773	56531812	2597171	1727	28005											
ZNF71	58491	broad.mit.edu	37	chr19	57133862	57133862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcatcgtgcaccagatcGtgcacaccggggagaagccc	11	16	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57133862	T	T	57133862	3	4	10	1	0	0	0	0	1	0	0	0	18242	1145	40	3	1209	3	ZNF71	19	57133862	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	602050	57133862	1995121	1728	28006											
PEG3	5178	broad.mit.edu	37	chr19	57325536	57325537	+	Nonsense_Mutation	DNP	GG	CA	CA													gctctgcagcctctccatctGgcccttcagcctctccgttt					rs139570920	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	57325537	CA	CA	57325536	4	2	10	1	0	0	0	0	0	1	0	0	11814	1348	47	4	496	4	PEG3	19	57325536	Nonsense_Mutation	DNP	GG	TCGA-05-4397-01A-01D-1265-08	191674	57325536	1803447	1729	28007											
ZNF548	147694	broad.mit.edu	37	chr19	57901428	57901428	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgcctttgtcgctcccGccccgctcttccctggctgg	10	18	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57901428	A	A	57901428	1	1	10	0	1	0	0	0	0	0	0	0	18107	1102	38	4		4	ZNF548	19	57901428	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	575892	57901428	1227555	1730	28008											
ZSCAN4	201516	broad.mit.edu	37	chr19	58189694	58189694	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcttctgacaacccataCaactcaaaaagagcagagct	6	11	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58189694	T	T	58189694	2	4	10	1	0	0	0	0	0	0	0	1	18366	489	17	4		4	ZSCAN4	19	58189694	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	288266	58189694	939289	1731	28009											
ZNF274	10782	broad.mit.edu	37	chr19	58718164	58718164	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatgaacattgaggttgttGaggtcctcacactgaaccag	10	8	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58718164	A	A	58718164	3	1	10	1	0	0	0	0	1	0	0	0	17935	1291	45	4	348	4	ZNF274	19	58718164	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	528470	58718164	410819	1732	28010											
C20orf54	113278	broad.mit.edu	37	chr20	746287	746287	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccagctggatgaccaccgtGaggtaggagggcaggtacca	16	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	746287	A	A	746287	2	1	10	1	0	0	0	0	0	0	0	1	2136	1277	45	4		4	C20orf54	20	746287	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08		746287	62279233	1733	28011											
ANGPT4	51378	broad.mit.edu	37	chr20	853669	853669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctggggcccttgaagtaGtgccagcggatgccgtccat	14	11	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	853669	T	T	853669	3	4	10	1	0	0	0	0	1	0	0	0	612	1020	36	3	69	3	ANGPT4	20	853669	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	107382	853669	62171851	1734	28012											
ANGPT4	51378	broad.mit.edu	37	chr20	870983	870983	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacctgctccagcttcgacCtcaagatcgtcttgatggcc	10	14	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	870983	T	T	870983	3	4	10	1	0	0	0	0	1	0	0	0	612	681	24	4	1205	4	ANGPT4	20	870983	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	17314	870983	62154537	1735	28013											
SIRPG	55423	broad.mit.edu	37	chr20	1629559	1629559	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgggcttcaactcacctGatctgtagaagggggtgaca	12	11	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1629559	A	A	1629559	1	1	10	0	1	0	0	0	0	0	0	0	14449	1305	45	4		4	SIRPG	20	1629559	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	758576	1629559	61395961	1736	28014											
TGM6	343641	broad.mit.edu	37	chr20	2375793	2375793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcacttctctaaagctGggtttcccaggggaagggtc	11	9	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2375793	T	T	2375793	1	4	10	0	1	0	0	0	0	0	0	0	15957	1363	47	2		2	TGM6	20	2375793	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	746234	2375793	60649727	1737	28015											
ZNF343	79175	broad.mit.edu	37	chr20	2474173	2474173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccaactcaccactatttGggcctttccctcctttttct	3	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2474173	T	T	2474173	3	4	10	1	0	0	0	0	1	0	0	0	17984	1357	47	2	1642	2	ZNF343	20	2474173	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	98380	2474173	60551347	1738	28016											
DDRGK1	65992	broad.mit.edu	37	chr20	3180739	3180740	+	Missense_Mutation	DNP	CC	AA	AA													tttccgctcctcacgttcagCctcctctgcctggagagagg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	3180740	AA	AA	3180739	3	1	10	1	0	0	0	0	1	0	0	0	4371	739	26	3	550	3	DDRGK1	20	3180739	Missense_Mutation	DNP	CC	TCGA-05-4397-01A-01D-1265-08	706566	3180739	59844781	1739	28017											
SLC4A11	83959	broad.mit.edu	37	chr20	3210490	3210490	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggccctggagggaggGgatctcagggagaaagggct	22	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3210490	A	A	3210490	1	1	10	0	1	0	0	0	0	0	0	0	14766	1247	43	4		4	SLC4A11	20	3210490	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	29751	3210490	59815030	1740	28018											
ATRN	8455	broad.mit.edu	37	chr20	3556573	3556573	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccattgtgtccccaggaAccacagctgctcagaaggcc	10	14	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3556573	G	G	3556573	3	3	10	1	0	0	0	0	1	0	0	0	1210	43	2	5	2242	5	ATRN	20	3556573	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	346083	3556573	59468947	1741	28019											
SIGLEC1	6614	broad.mit.edu	37	chr20	3675341	3675341	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctgatgggtgcagctagGctcgtggtggctgagcctgg	19	8	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3675341	A	A	3675341	2	1	10	1	0	0	0	0	0	0	0	1	14418	1194	42	4		4	SIGLEC1	20	3675341	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	118768	3675341	59350179	1742	28020											
C20orf27	54976	broad.mit.edu	37	chr20	3736094	3736094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcccacacccatccaggcCctgctggaggaggggacgca	12	16	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3736094	A	A	3736094	1	1	10	0	1	0	0	0	0	0	0	0	2129	638	22	2		2	C20orf27	20	3736094	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	60753	3736094	59289426	1743	28021											
MAVS	57506	broad.mit.edu	37	chr20	3835103	3835103	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagaaattaaagatgaAagaaaacaaacattccaaaa	5	4	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3835103	C	C	3835103	1	2	10	0	1	0	0	0	0	0	0	0	9430	29	1	5		5	MAVS	20	3835103	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	99009	3835103	59190417	1744	28022											
PRND	23627	broad.mit.edu	37	chr20	4705650	4705650	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgagttttggttggagagGggcgcaggacttcgggtcac	18	7	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4705650	A	A	4705650	2	1	10	1	0	0	0	0	0	0	0	1	12649	1223	43	4		4	PRND	20	4705650	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	870547	4705650	58319870	1745	28023											
RASSF2	9770	broad.mit.edu	37	chr20	4776436	4776436	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaagcatcccagtcatctCcctgccccgtctctcctcac	4	22	4	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4776436	A	A	4776436	1	1	10	0	1	0	0	0	0	0	0	0	13194	870	30	3		3	RASSF2	20	4776436	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	70786	4776436	58249084	1746	28024											
PLCB1	23236	broad.mit.edu	37	chr20	8698346	8698346	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagttcctcttccaagccCtatggatttaatgtataaaa	7	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8698346	T	T	8698346	3	4	10	1	0	0	0	0	1	0	0	0	12122	681	24	4	1418	4	PLCB1	20	8698346	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3921910	8698346	54327174	1747	28025											
PLCB4	5332	broad.mit.edu	37	chr20	9343456	9343456	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttgtgtttttattacacAaaatggatacaatctatcta	5	5	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9343456	G	G	9343456	1	3	10	0	1	0	0	0	0	0	0	0	12125	145	5	5		5	PLCB4	20	9343456	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	645110	9343456	53682064	1748	28026											
PLCB4	5332	broad.mit.edu	37	chr20	9382220	9382220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtcacaaggaagctgttGcaaatagcgtcaagaaggtc	13	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9382220	T	T	9382220	3	4	10	1	0	0	0	0	1	0	0	0	12125	1319	46	3	1660	3	PLCB4	20	9382220	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	38764	9382220	53643300	1749	28027											
PLCB4	5332	broad.mit.edu	37	chr20	9434103	9434103	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctagagaaggcaatgaagaAgaaggggtaatactgtttat	12	4	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9434103	T	T	9434103	3	4	10	1	0	0	0	0	1	0	0	0	12125	72	3	5	3108	5	PLCB4	20	9434103	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	51883	9434103	53591417	1750	28028											
SPTLC3	55304	broad.mit.edu	37	chr20	13029632	13029632	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttatgataagctcattgttGaatcgtttgaggaagcaccc	9	7	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13029632	C	C	13029632	3	2	10	1	0	0	0	0	1	0	0	0	15243	1291	45	4	163	4	SPTLC3	20	13029632	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3595529	13029632	49995888	1751	28029											
SLC24A3	57419	broad.mit.edu	37	chr20	19665898	19665898	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggacgatgttgtggctgAggctggcaacgaaacagaga	17	6	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19665898	T	T	19665898	3	4	10	1	0	0	0	0	1	0	0	0	14581	304	11	5	1263	5	SLC24A3	20	19665898	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	6636266	19665898	43359622	1752	28030											
C20orf26	26074	broad.mit.edu	37	chr20	20140104	20140104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaggtagggtttgacgagGgcctttgcgtgccttctagc	16	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20140104	T	T	20140104	1	4	10	0	1	0	0	0	0	0	0	0	2128	1247	43	2		2	C20orf26	20	20140104	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	474206	20140104	42885416	1753	28031											
CST9L	128821	broad.mit.edu	37	chr20	23545755	23545755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctctgaacaatggcttcCtctccacattgccctttccc	5	16	2	1	rs148541767	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23545755	A	A	23545755	1	1	10	0	1	0	0	0	0	0	0	0	4014	696	24	2		2	CST9L	20	23545755	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3405651	23545755	39479765	1754	28032											
CST9	128822	broad.mit.edu	37	chr20	23584171	23584171	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccctttgtccctcggaatGgctttgtcagctgctcctgt	9	13	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23584171	A	A	23584171	2	1	10	1	0	0	0	0	0	0	0	1	4013	1335	47	4		4	CST9	20	23584171	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	38416	23584171	39441349	1755	28033											
DEFB115	245929	broad.mit.edu	37	chr20	29845424	29845424	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcagccttgcctaggtcaAtaaaatgctgagtgcacacc	9	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29845424	G	G	29845424	1	3	10	0	1	0	0	0	0	0	0	0	4443	116	4	5		5	DEFB115	20	29845424	5'Flank	SNP	A	TCGA-05-4397-01A-01D-1265-08	6261253	29845424	33180096	1756	28034											
XKR7	343702	broad.mit.edu	37	chr20	30556135	30556135	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcggcccggggccgcgctacGagctgcgggactgctgctgg	19	14	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30556135	A	A	30556135	3	1	10	1	0	0	0	0	1	0	0	0	17563	1059	37	4	159	4	XKR7	20	30556135	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	710711	30556135	32469385	1757	28035											
C20orf160	140706	broad.mit.edu	37	chr20	30602565	30602565	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagggtttactttctccatCtgtaaaatgggacttacaga	8	8	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30602565	T	T	30602565	1	4	10	0	1	0	0	0	0	0	0	0	2115	928	32	4		4	C20orf160	20	30602565	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	46430	30602565	32422955	1758	28036											
HCK	3055	broad.mit.edu	37	chr20	30687111	30687111	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatgtcttaagcctgaaatCtgggggcttccttggccctt	10	10	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30687111	A	A	30687111	1	1	10	0	1	0	0	0	0	0	0	0	7060	928	32	3		3	HCK	20	30687111	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	84546	30687111	32338409	1759	28037											
DNMT3B	1789	broad.mit.edu	37	chr20	31379549	31379549	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaatgagggctaagccctGagagcagggatgaagcaaga	17	6	0	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31379549	T	T	31379549	1	4	10	0	1	0	0	0	0	0	0	0	4717	1305	45	3		3	DNMT3B	20	31379549	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	692438	31379549	31645971	1760	28038											
GSS	2937	broad.mit.edu	37	chr20	33533834	33533834	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtccatctgcacagcaTaggcttgctccagcagggca	11	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33533834	C	C	33533834	3	2	10	1	0	0	0	0	1	0	0	0	6895	1406	49	5	1271	5	GSS	20	33533834	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	2154285	33533834	29491686	1761	28039											
DLGAP4	22839	broad.mit.edu	37	chr20	35060907	35060907	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaccaagaacaacactactGagctgactgccccaccaccc	5	19	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35060907	T	T	35060907	4	4	10	1	0	0	0	0	0	1	0	0	4602	1291	45	3	789	3	DLGAP4	20	35060907	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1527073	35060907	27964613	1762	28040											
SAMHD1	25939	broad.mit.edu	37	chr20	35521455	35521455	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtgttatgagtggggcTataacatcgccatcctatta	11	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35521455	G	G	35521455	2	3	10	1	0	0	0	0	0	0	0	1	13939	1512	53	5		5	SAMHD1	20	35521455	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	460548	35521455	27504065	1763	28041											
KIAA1755	85449	broad.mit.edu	37	chr20	36888932	36888932	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccagcggcgggcggcgcGgctcctctcctgggcgcggg	19	16	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36888932	T	T	36888932	1	4	10	0	1	0	0	0	0	0	0	0	8327	1131	39	1		1	KIAA1755	20	36888932	5'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	1367477	36888932	26136588	1764	28042											
LBP	3929	broad.mit.edu	37	chr20	36997738	36997738	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaatctgtctgtggaccccTatatggagatagatgccttt	11	8	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36997738	A	A	36997738	3	1	10	1	0	0	0	0	1	0	0	0	8723	1522	53	5	1119	5	LBP	20	36997738	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	108806	36997738	26027782	1765	28043											
RALGAPB	57148	broad.mit.edu	37	chr20	37146248	37146248	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccacccccccacataaccGgaggcaccgggctgttactg	9	17	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37146248	A	A	37146248	3	1	10	1	0	0	0	0	1	0	0	0	13123	1116	39	4	1177	4	RALGAPB	20	37146248	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	148510	37146248	25879272	1766	28044											
PLCG1	5335	broad.mit.edu	37	chr20	39794392	39794392	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttactgagtactgcatcgaGaccggagcccctgacggctc	11	14	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39794392	T	T	39794392	3	4	10	1	0	0	0	0	1	0	0	0	12130	933	33	3	1787	3	PLCG1	20	39794392	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2648144	39794392	23231128	1767	28045											
PTPRT	11122	broad.mit.edu	37	chr20	40730966	40730966	+	Intron	DEL	C	-	-													cacaaaggtgaatagataggCcctgctcatttggctgcccc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40730966	-	-	40730966	6	5	10	0	1	1	0	1	0	0	0	0	12920	754	26	0		0	PTPRT	20	40730966	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08	936574	40730966	22294554	1768	28046											
TOX2	84969	broad.mit.edu	37	chr20	42635070	42635070	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcagaaacatcatccctTctctcctttgccaaggggtt	7	13	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42635070	C	C	42635070	1	2	10	0	1	0	0	0	0	0	0	0	16502	1798	62	5		5	TOX2	20	42635070	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	1904104	42635070	20390450	1769	28047											
TOX2	84969	broad.mit.edu	37	chr20	42679796	42679796	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtccaagtagcatgaggctCcatcttgagattcacctgtc	10	11	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42679796	T	T	42679796	1	4	10	0	1	0	0	0	0	0	0	0	16502	870	30	4		4	TOX2	20	42679796	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	44726	42679796	20345724	1770	28048											
TOX2	84969	broad.mit.edu	37	chr20	42694333	42694333	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttctgttctccagtgactGatatctgtctccttccagag	7	12	5	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42694333	T	T	42694333	1	4	10	0	1	0	0	0	0	0	0	0	16502	1305	45	3		3	TOX2	20	42694333	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	14537	42694333	20331187	1771	28049											
PABPC1L	80336	broad.mit.edu	37	chr20	43545597	43545597	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatcgatgctaccctcaaGctgctaatgggcaccaggca	11	12	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43545597	A	A	43545597	1	1	10	0	1	0	0	0	0	0	0	0	11458	986	34	4		4	PABPC1L	20	43545597	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	851264	43545597	19479923	1772	28050											
CDH22	64405	broad.mit.edu	37	chr20	44828182	44828182	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatctggtccaaatctgattCgcggtcaatggcgtacctgc	11	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44828182	T	T	44828182	3	4	10	1	0	0	0	0	1	0	0	0	3137	893	31	4	1203	4	CDH22	20	44828182	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	1282585	44828182	18197338	1773	28051											
ELMO2	63916	broad.mit.edu	37	chr20	45022462	45022462	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgaggaggggtctcagatCctacctcaatagggcaatgc	12	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45022462	A	A	45022462	1	1	10	0	1	0	0	0	0	0	0	0	5108	870	30	3		3	ELMO2	20	45022462	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	194280	45022462	18003058	1774	28052											
ZMYND8	23613	broad.mit.edu	37	chr20	45927755	45927755	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcattctcaaaaggaatttGaacaagtacatcaataacaa	5	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45927755	C	C	45927755	1	2	10	0	1	0	0	0	0	0	0	0	17837	1305	45	4		4	ZMYND8	20	45927755	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	905293	45927755	17097765	1775	28053											
NCOA3	8202	broad.mit.edu	37	chr20	46276056	46276056	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatcatgagaccccggacAaacacccccaagcaacttag	6	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46276056	T	T	46276056	2	4	10	1	0	0	0	0	0	0	0	1	10325	117	5	5		5	NCOA3	20	46276056	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	348301	46276056	16749464	1776	28054											
FAM65C	140876	broad.mit.edu	37	chr20	49227634	49227634	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacccaggttttctgcccatCaggcagccaggaagatgcaa	11	12	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49227634	A	A	49227634	1	1	10	0	1	0	0	0	0	0	0	0	5652	841	29	3		3	FAM65C	20	49227634	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2951578	49227634	13797886	1777	28055											
C20orf107	388799	broad.mit.edu	37	chr20	55111569	55111569	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actaataaaactattctgaaGaaaagaacttccatgtttga	5	6	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55111569	A	A	55111569	1	1	10	0	1	0	0	0	0	0	0	0	2099	957	33	4		4	C20orf107	20	55111569	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	5883935	55111569	7913951	1778	28056											
STX16	8675	broad.mit.edu	37	chr20	57242651	57242651	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgggtggatggagtggatGaagtaagttccatgttagtt	16	2	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57242651	A	A	57242651	3	1	10	1	0	0	0	0	1	0	0	0	15457	1291	45	4	260	4	STX16	20	57242651	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2131082	57242651	5782869	1779	28057											
ZNF831	128611	broad.mit.edu	37	chr20	57768837	57768837	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcacccctcgctggccacCccacctcaggctcctagagt	9	19	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57768837	T	T	57768837	2	4	10	1	0	0	0	0	0	0	0	1	18314	610	22	4		4	ZNF831	20	57768837	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	526186	57768837	5256683	1780	28058											
TAF4	6874	broad.mit.edu	37	chr20	60588024	60588024	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtcacctaaaacgagcgCaagtaaaaggaattcccacc	8	11	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60588024	T	T	60588024	1	4	10	0	1	0	0	0	0	0	0	0	15645	725	25	4		4	TAF4	20	60588024	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	2819187	60588024	2437496	1781	28059											
DIDO1	11083	broad.mit.edu	37	chr20	61511984	61511984	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaacggaggggctggccccCttggtcccgggaaattgggg	18	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61511984	G	G	61511984	3	3	10	1	0	0	0	0	1	0	0	0	4562	681	24	4	1402	4	DIDO1	20	61511984	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	923960	61511984	1513536	1782	28060											
BIRC7	79444	broad.mit.edu	37	chr20	61869766	61869766	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtcagttcctgctccgGtcaaaaggaagagactttgt	11	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61869766	T	T	61869766	2	4	10	1	0	0	0	0	0	0	0	1	1445	1248	44	3		3	BIRC7	20	61869766	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	357782	61869766	1155754	1783	28061											
ARFGAP1	55738	broad.mit.edu	37	chr20	61917287	61917287	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactaactgtcacttctcccTctgctcttatcttgctgctg	5	15	5	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61917287	A	A	61917287	1	1	10	0	1	0	0	0	0	0	0	0	851	1566	54	5		5	ARFGAP1	20	61917287	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	47521	61917287	1108233	1784	28062											
STMN3	50861	broad.mit.edu	37	chr20	62275217	62275217	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctctggggacaggtcagaAggggacttgaggatgacctc	15	9	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62275217	C	C	62275217	2	2	10	1	0	0	0	0	0	0	0	1	15428	59	3	5		5	STMN3	20	62275217	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	357930	62275217	750303	1785	28063											
DNAJC5	80331	broad.mit.edu	37	chr20	62562428	62562428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcagagccagaatggGccctgaatggtgtcaacctg	16	9	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62562428	T	T	62562428	1	4	10	0	1	0	0	0	0	0	0	0	4690	1218	42	3		3	DNAJC5	20	62562428	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	287211	62562428	463092	1786	28064											
ZNF512B	57473	broad.mit.edu	37	chr20	62598958	62598958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggcccacagtgagcacCgctgtcccaacacgagggca	11	16	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62598958	A	A	62598958	1	1	10	0	1	0	0	0	0	0	0	0	18084	667	23	1		1	ZNF512B	20	62598958	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	36530	62598958	426562	1787	28065											
PRPF6	24148	broad.mit.edu	37	chr20	62612740	62612740	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgctttggggcgtgtttgGgggcgggggtctatggccgc	21	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62612740	C	C	62612740	1	2	10	0	1	0	0	0	0	0	0	0	12680	1247	43	4		4	PRPF6	20	62612740	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	13782	62612740	412780	1788	28066											
MYT1	4661	broad.mit.edu	37	chr20	62859386	62859386	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagattttcgtgtgttttaTaatgtaaaaaaactcctact	6	5	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62859386	A	A	62859386	1	1	10	0	1	0	0	0	0	0	0	0	10200	1421	49	5		5	MYT1	20	62859386	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	246646	62859386	166134	1789	28067											
BAGE2	85319	broad.mit.edu	37	chr21	11038790	11038790	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagctggtttacccatgcCagttttttggagtgactgag	11	7	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11038790	A	A	11038790	1	1	10	0	1	0	0	0	0	0	0	0	1297	609	21	2		2	BAGE2	21	11038790	3'UTR	SNP	C	TCGA-05-4397-01A-01D-1265-08		11038790	37091105	1790	28068											
BAGE2	85319	broad.mit.edu	37	chr21	11049568	11049568	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagtagtacaaaagaactGatctaagaggtctcccgggc	10	9	2	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11049568	T	T	11049568	1	4	10	0	1	0	0	0	0	0	0	0	1297	1305	45	3		3	BAGE2	21	11049568	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	10778	11049568	37080327	1791	28069											
BAGE2	85319	broad.mit.edu	37	chr21	11058268	11058268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataatgatacatctgggtaCatttctcttcacagcatttg	7	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11058268	A	A	11058268	3	1	10	1	0	0	0	0	1	0	0	0	1297	478	17	3	165	3	BAGE2	21	11058268	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	8700	11058268	37071627	1792	28070											
ADAMTS5	11096	broad.mit.edu	37	chr21	28305100	28305100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagattaatattatttccCcagcttcccttattcattat	2	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28305100	A	A	28305100	1	1	10	0	1	0	0	0	0	0	0	0	269	638	22	2		2	ADAMTS5	21	28305100	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	17246832	28305100	19824795	1793	28071											
RNF160	26046	broad.mit.edu	37	chr21	30307364	30307364	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagctacagtctgttatgaTattaacaatgacagacatac	7	7	1	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30307364	C	C	30307364	1	2	10	0	1	0	0	0	0	0	0	0	13566	1421	49	5		5	RNF160	21	30307364	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	2002264	30307364	17822531	1794	28072											
CLDN17	26285	broad.mit.edu	37	chr21	31538455	31538455	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaagtgctgctcccaGctctcgtttctgacctatgt	9	11	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31538455	C	C	31538455	3	2	10	1	0	0	0	0	1	0	0	0	3509	962	34	4	197	4	CLDN17	21	31538455	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1231091	31538455	16591440	1795	28073											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654687	31654687	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatataacataatggtgaGacgtagctgggtatgaagca	12	4	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31654687	T	T	31654687	2	4	10	1	0	0	0	0	0	0	0	1	8614	929	33	3		3	KRTAP24-1	21	31654687	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	116232	31654687	16475208	1796	28074											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31797875	31797875	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattggatccacagcccagtGaggagcagctcctggatcca	11	13	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31797875	A	A	31797875	3	1	10	1	0	0	0	0	1	0	0	0	8595	1294	45	4	166	4	KRTAP13-3	21	31797875	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	143188	31797875	16332020	1797	28075											
KRTAP6-3	337968	broad.mit.edu	37	chr21	31964886	31964886	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcggctgtggctatgggtGctgtggctacggaggcctgg	20	8	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31964886	C	C	31964886	3	2	10	1	0	0	0	0	1	0	0	0	8643	1319	46	4	124	4	KRTAP6-3	21	31964886	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	167011	31964886	16165009	1798	28076											
DSCR3	10311	broad.mit.edu	37	chr21	38597727	38597727	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagggtctgtttcatttctGatacagaataatcacaaaaa	7	6	4	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38597727	C	C	38597727	1	2	10	0	1	0	0	0	0	0	0	0	4811	1305	45	4		4	DSCR3	21	38597727	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	6632841	38597727	9532168	1799	28077											
ERG	2078	broad.mit.edu	37	chr21	39947493	39947494	+	Intron	INS	-	GA	GA													gctcctgggctgtgttgactINSgacccctaattaactgatat							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	39947494	GA	GA	39947493	6	5	10	0	1	1	1	0	0	0	0	0	5264	1595	55	0		0	ERG	21	39947493	Intron	INS	-	TCGA-05-4397-01A-01D-1265-08	1349766	39947493	8182402	1800	28078											
UBASH3A	53347	broad.mit.edu	37	chr21	43833623	43833623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcgtgagccactacatcCttcaaaaatgtaagccatta	5	12	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43833623	T	T	43833623	3	4	10	1	0	0	0	0	1	0	0	0	16965	681	24	4	676	4	UBASH3A	21	43833623	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	3886130	43833623	4296272	1801	28079											
AGPAT3	56894	broad.mit.edu	37	chr21	45400903	45400903	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatatataatcagaagggcAtgtttccaggggagcagttt	12	5	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45400903	G	G	45400903	3	3	10	1	0	0	0	0	1	0	0	0	388	217	8	5	903	5	AGPAT3	21	45400903	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	1567280	45400903	2728992	1802	28080											
AGPAT3	56894	broad.mit.edu	37	chr21	45402018	45402018	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcagaccacggtctgagaGggctgtctccccgcgggcca	15	14	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45402018	C	C	45402018	1	2	10	0	1	0	0	0	0	0	0	0	388	1015	35	4		4	AGPAT3	21	45402018	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1115	45402018	2727877	1803	28081											
PFKL	5211	broad.mit.edu	37	chr21	45738419	45738419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgacacgccggcctgcGtggtcaccctctcggggaac	13	17	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45738419	A	A	45738419	3	1	10	1	0	0	0	0	1	0	0	0	11859	1145	40	4	1041	4	PFKL	21	45738419	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	336401	45738419	2391476	1804	28082											
SLC19A1	6573	broad.mit.edu	37	chr21	46936148	46936148	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcccaggctcaccctcctCcagctcagaggctgaccctg	9	19	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46936148	T	T	46936148	1	4	10	0	1	0	0	0	0	0	0	0	14541	870	30	4		4	SLC19A1	21	46936148	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	1197729	46936148	1193747	1805	28083											
PCBP3	54039	broad.mit.edu	37	chr21	47319565	47319565	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattgaatctctgcctctcCtggggtctctgtaaggggat	12	9	3	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47319565	T	T	47319565	1	4	10	0	1	0	0	0	0	0	0	0	11596	696	24	4		4	PCBP3	21	47319565	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	383417	47319565	810330	1806	28084											
COL6A1	1291	broad.mit.edu	37	chr21	47422668	47422668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccagatctgcgtaggtgCgcgcggggccgcccgggcag	18	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47422668	A	A	47422668	1	1	10	0	1	0	0	0	0	0	0	0	3731	783	27	3		3	COL6A1	21	47422668	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	103103	47422668	707227	1807	28085											
FTCD	10841	broad.mit.edu	37	chr21	47571438	47571438	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccctttcccgaggggctgGgtggggctccatggggtcag	17	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47571438	C	C	47571438	1	2	10	0	1	0	0	0	0	0	0	0	6141	1247	43	4		4	FTCD	21	47571438	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	148770	47571438	558457	1808	28086											
PCNT	5116	broad.mit.edu	37	chr21	47766213	47766213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgggggtggggtgggcgCtgccatctcctttctctgag	19	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47766213	A	A	47766213	1	1	10	0	1	0	0	0	0	0	0	0	11684	812	28	3		3	PCNT	21	47766213	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	194775	47766213	363682	1809	28087											
PCNT	5116	broad.mit.edu	37	chr21	47819834	47819834	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagccaccacgtctgcaccAgaaacactggcgtcagggag	12	14	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47819834	G	G	47819834	1	3	10	0	1	0	0	0	0	0	0	0	11684	203	7	5		5	PCNT	21	47819834	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	53621	47819834	310061	1810	28088											
CECR5	27440	broad.mit.edu	37	chr22	17630341	17630341	+	Intron	DEL	C	-	-													aggactaggtgattccatatCccaacccaggggaaagggac							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17630341	-	-	17630341	6	5	10	0	1	1	0	1	0	0	0	0	3237	870	30	0		0	CECR5	22	17630341	Intron	DEL	C	TCGA-05-4397-01A-01D-1265-08		17630341	33674225	1811	28089											
CLTCL1	8218	broad.mit.edu	37	chr22	19171032	19171032	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggtgaagagacaagctgcGaagcactccctcttgccttc	10	13	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19171032	A	A	19171032	2	1	10	1	0	0	0	0	0	0	0	1	3599	1049	37	4		4	CLTCL1	22	19171032	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	1540691	19171032	32133534	1812	28090											
HIRA	7290	broad.mit.edu	37	chr22	19371330	19371330	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctggtgataagaacactaAgcataagatccaccctctta	6	11	1	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19371330	T	T	19371330	1	4	10	0	1	0	0	0	0	0	0	0	7187	87	3	5		5	HIRA	22	19371330	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	200298	19371330	31933236	1813	28091											
SEPT5	5413	broad.mit.edu	37	chr22	19707146	19707146	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattgacaagcagtacgtgGgcttcgccacactgcccaac	9	14	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19707146	T	T	19707146	3	4	10	1	0	0	0	0	1	0	0	0	14180	1232	43	2	86	2	SEPT5	22	19707146	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	335816	19707146	31597420	1814	28092											
KLHL22	84861	broad.mit.edu	37	chr22	20796476	20796476	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggggcggctcaaggagcaGggagcggggcagggtgagca	23	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20796476	C	C	20796476	3	2	10	1	0	0	0	0	1	0	0	0	8448	991	35	4	119	4	KLHL22	22	20796476	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1089330	20796476	30508090	1815	28093											
CABIN1	23523	broad.mit.edu	37	chr22	24434641	24434641	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaatctccagcctctcttcCcttcctggaagttgggaggt	9	13	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24434641	G	G	24434641	1	3	10	0	1	0	0	0	0	0	0	0	2554	638	22	4		4	CABIN1	22	24434641	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3638165	24434641	26869925	1816	28094											
UPB1	51733	broad.mit.edu	37	chr22	24909188	24909188	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacaacaaatgcaagtggttGctctgacccaagcctattga	8	10	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24909188	C	C	24909188	1	2	10	0	1	0	0	0	0	0	0	0	17128	1334	46	4		4	UPB1	22	24909188	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	474547	24909188	26395378	1817	28095											
UPB1	51733	broad.mit.edu	37	chr22	24911380	24911380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggggcttcctggggcccaGccagctaaagcccaaggctg	16	13	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24911380	T	T	24911380	1	4	10	0	1	0	0	0	0	0	0	0	17128	986	34	3		3	UPB1	22	24911380	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	2192	24911380	26393186	1818	28096											
NEFH	4744	broad.mit.edu	37	chr22	29879485	29879485	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accacagagctggaggcactGaaaagcaccaaggactcact	10	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29879485	C	C	29879485	2	2	10	1	0	0	0	0	0	0	0	1	10409	1277	45	4		4	NEFH	22	29879485	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	4968105	29879485	21425081	1819	28097											
NF2	4771	broad.mit.edu	37	chr22	30057162	30057162	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattttgagcctcagctggcGcttacagtagctgttcttat	9	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30057162	A	A	30057162	1	1	10	0	1	0	0	0	0	0	0	0	10452	1102	38	4		4	NF2	22	30057162	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	177677	30057162	21247404	1820	28098											
MORC2	22880	broad.mit.edu	37	chr22	31329999	31329999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagactgctggtgggggctGcaggccctagagagagaggc	19	9	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31329999	A	A	31329999	1	1	10	0	1	0	0	0	0	0	0	0	9796	1334	46	4		4	MORC2	22	31329999	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1272837	31329999	19974567	1821	28099											
INPP5J	27124	broad.mit.edu	37	chr22	31522647	31522647	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcgactcaaggacgccctCttcacggaccagtggagtga	12	12	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31522647	G	G	31522647	2	3	10	1	0	0	0	0	0	0	0	1	7829	900	32	4		4	INPP5J	22	31522647	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	192648	31522647	19781919	1822	28100											
DEPDC5	9681	broad.mit.edu	37	chr22	32215231	32215231	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtaagttggttgcttaagaGagagccttggactaggagct	15	5	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32215231	A	A	32215231	1	1	10	0	1	0	0	0	0	0	0	0	4482	957	33	4		4	DEPDC5	22	32215231	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	692584	32215231	19089335	1823	28101											
DEPDC5	9681	broad.mit.edu	37	chr22	32270283	32270283	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtccagctgctctctgaAcagaagggcctctcaccgta	11	13	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32270283	G	G	32270283	2	3	10	1	0	0	0	0	0	0	0	1	4482	40	2	5		5	DEPDC5	22	32270283	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	55052	32270283	19034283	1824	28102											
SLC5A1	6523	broad.mit.edu	37	chr22	32495224	32495224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggtgcccattgtgcaGtcagcacaaagtgggcaact	13	11	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32495224	T	T	32495224	3	4	10	1	0	0	0	0	1	0	0	0	14775	1020	36	3	1381	3	SLC5A1	22	32495224	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	224941	32495224	18809342	1825	28103											
MCM5	4174	broad.mit.edu	37	chr22	35802719	35802719	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccaggaagtgcaacacGtgagtctgtggcccagaggg	15	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35802719	A	A	35802719	5	1	10	1	0	0	0	0	0	0	1	0	9483	1159	40	4	611	4	MCM5	22	35802719	Splice_Site	SNP	G	TCGA-05-4397-01A-01D-1265-08	3307495	35802719	15501847	1826	28104											
TMPRSS6	164656	broad.mit.edu	37	chr22	37470637	37470637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaggagggatgcgcggGcgggttactcaccgcagttt	19	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37470637	T	T	37470637	1	4	10	0	1	0	0	0	0	0	0	0	16374	1218	42	3		3	TMPRSS6	22	37470637	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1667918	37470637	13833929	1827	28105											
PICK1	9463	broad.mit.edu	37	chr22	38470903	38470903	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttccagctgcagcgcctcGtgtccaccatgtccaagtac	9	15	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38470903	C	C	38470903	3	2	10	1	0	0	0	0	1	0	0	0	11976	1145	40	4	1058	4	PICK1	22	38470903	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1000266	38470903	12833663	1828	28106											
ENTHD1	150350	broad.mit.edu	37	chr22	40231877	40231877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaaccatgaatcttgagtgGaagtgtttcctgggacaaca	10	9	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40231877	T	T	40231877	3	4	10	1	0	0	0	0	1	0	0	0	5179	1174	41	3	1160	3	ENTHD1	22	40231877	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1760974	40231877	11072689	1829	28107											
L3MBTL2	83746	broad.mit.edu	37	chr22	41609955	41609955	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccttcttctccaagaccaaGaggttctgcagcgtctcctg	9	14	4	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41609955	C	C	41609955	3	2	10	1	0	0	0	0	1	0	0	0	8664	933	33	4	331	4	L3MBTL2	22	41609955	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1378078	41609955	9694611	1830	28108											
ARFGAP3	26286	broad.mit.edu	37	chr22	43236878	43236878	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagccactgcacctagcctGagcttctttactattatagc	7	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43236878	C	C	43236878	1	2	10	0	1	0	0	0	0	0	0	0	853	1305	45	4		4	ARFGAP3	22	43236878	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1626923	43236878	8067688	1831	28109											
SMC1B	27127	broad.mit.edu	37	chr22	45755640	45755640	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaaagggcaatgcattaAgttccacacaacggcacata	8	10	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45755640	C	C	45755640	1	2	10	0	1	0	0	0	0	0	0	0	14896	87	3	5		5	SMC1B	22	45755640	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2518762	45755640	5548926	1832	28110											
FBLN1	2192	broad.mit.edu	37	chr22	45944567	45944567	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacatccctggaagcttcCagtgcagctgcccctcgtct	8	16	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45944567	T	T	45944567	4	4	10	1	0	0	0	0	0	1	0	0	5755	595	21	4	1566	4	FBLN1	22	45944567	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	188927	45944567	5359999	1833	28111											
CELSR1	9620	broad.mit.edu	37	chr22	46785372	46785372	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggcgccgtccacctgcgTctcattgcggctcagcttct	10	17	3	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46785372	C	C	46785372	3	2	10	1	0	0	0	0	1	0	0	0	3251	1667	58	5	2746	5	CELSR1	22	46785372	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	840805	46785372	4519194	1834	28112											
TBC1D22A	25771	broad.mit.edu	37	chr22	47393642	47393642	+	Intron	DEL	G	-	-													cgcagcccctctctgtgggcGgggggaggtggccctcagcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47393642	-	-	47393642	6	5	10	0	1	1	0	1	0	0	0	0	15730	1131	39	0		0	TBC1D22A	22	47393642	Intron	DEL	G	TCGA-05-4397-01A-01D-1265-08	608270	47393642	3910924	1835	28113											
MOV10L1	54456	broad.mit.edu	37	chr22	50563913	50563913	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaactgaaagagtataacatGagcgggatcatcttaagaag	11	5	2	4			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50563913	T	T	50563913	3	4	10	1	0	0	0	0	1	0	0	0	9813	1290	45	3	1745	3	MOV10L1	22	50563913	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	3170271	50563913	740653	1836	28114											
SHOX	6473	broad.mit.edu	37	chrX	592021	592021	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacatttgcagctcccgtctCgccagggtaaggcccgggcc	12	16	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	592021	A	A	592021	1	1	10	0	1	0	0	0	0	0	0	0	14401	899	31	3		3	SHOX	23	592021	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08		592021	154678539	1837	28115											
ASMTL	8623	broad.mit.edu	37	chrX	1544637	1544637	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgtccagtactttctactCccacagactcaaaagatgga	6	12	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1544637	T	T	1544637	1	4	10	0	1	0	0	0	0	0	0	0	1050	870	30	4		4	ASMTL	23	1544637	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	952616	1544637	153725923	1838	28116											
NLGN4X	57502	broad.mit.edu	37	chrX	5827225	5827225	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccaccgcagtgcttgaatCtgatccaggagcccatagtt	9	12	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827225	A	A	5827225	3	1	10	1	0	0	0	0	1	0	0	0	10559	912	32	3	1781	3	NLGN4X	23	5827225	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	4282588	5827225	149443335	1839	28117											
GPR143	4935	broad.mit.edu	37	chrX	9714219	9714219	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaggaaaaccaaagtcattCttctcaaaagcaaagttttg	7	7	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9714219	G	G	9714219	1	3	10	0	1	0	0	0	0	0	0	0	6716	928	32	4		4	GPR143	23	9714219	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	3886994	9714219	145556341	1840	28118											
CXorf23	256643	broad.mit.edu	37	chrX	19955739	19955739	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataattttaaaaagccccttCagaaacaattaaagtagcac	4	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19955739	G	G	19955739	1	3	10	0	1	0	0	0	0	0	0	0	4136	841	29	4		4	CXorf23	23	19955739	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	10241520	19955739	135314821	1841	28119											
EIF1AX	1964	broad.mit.edu	37	chrX	20152148	20152148	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaaaagaaaagtcactgccCgtcacatttaaaataacgaa	5	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20152148	G	G	20152148	1	3	10	0	1	0	0	0	0	0	0	0	5032	667	23	4		4	EIF1AX	23	20152148	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	196409	20152148	135118412	1842	28120											
DMD	1756	broad.mit.edu	37	chrX	31986444	31986444	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttttcattcctattagatCtgtcgccctacctctttttt	4	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31986444	G	G	31986444	1	3	10	0	1	0	0	0	0	0	0	0	4620	928	32	4		4	DMD	23	31986444	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	11834296	31986444	123284116	1843	28121											
DMD	1756	broad.mit.edu	37	chrX	32632413	32632413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcacgcaacataagataCacctaccttatgttgttgta	6	9	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32632413	A	A	32632413	1	1	10	0	1	0	0	0	0	0	0	0	4620	493	17	3		3	DMD	23	32632413	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	645969	32632413	122638147	1844	28122											
DMD	1756	broad.mit.edu	37	chrX	32867855	32867855	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcacataccagtttttgcCctgtcaggccttcgaggagg	11	11	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32867855	T	T	32867855	3	4	10	1	0	0	0	0	1	0	0	0	4620	623	22	4	11432	4	DMD	23	32867855	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	235442	32867855	122402705	1845	28123											
FAM47A	158724	broad.mit.edu	37	chrX	34148385	34148385	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccccagtatttttcctGtgagaagaatttgtcctcat	7	11	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34148385	A	A	34148385	4	1	10	1	0	0	0	0	0	1	0	0	5620	1386	48	4	368	4	FAM47A	23	34148385	Nonsense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1280530	34148385	121122175	1846	28124											
FAM47A	158724	broad.mit.edu	37	chrX	34148601	34148601	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgatgtgtatctatattgaaGagagtcagaaacgcactctt	9	7	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34148601	A	A	34148601	3	1	10	1	0	0	0	0	1	0	0	0	5620	942	33	4	584	4	FAM47A	23	34148601	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	216	34148601	121121959	1847	28125											
USP9X	8239	broad.mit.edu	37	chrX	41082708	41082708	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgtttgtttgtttgttttGagacagagttttgctgttgt	11	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41082708	C	C	41082708	1	2	10	0	1	0	0	0	0	0	0	0	17217	1305	45	4		4	USP9X	23	41082708	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6934107	41082708	114187852	1848	28126											
XAGE5	170627	broad.mit.edu	37	chrX	52840318	52840318	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgggcaccttgccattgGcccttcgcccacccgggagc	11	17	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52840318	T	T	52840318	1	4	10	0	1	0	0	0	0	0	0	0	17548	1218	42	3		3	XAGE5	23	52840318	5'Flank	SNP	G	TCGA-05-4397-01A-01D-1265-08	11757610	52840318	102430242	1849	28127											
FAAH2	158584	broad.mit.edu	37	chrX	57337171	57337171	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagctacaaggtactattCttttatttttggctacatga	6	8	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57337171	A	A	57337171	1	1	10	0	1	0	0	0	0	0	0	0	5400	928	32	3		3	FAAH2	23	57337171	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	4496853	57337171	97933389	1850	28128											
EDA	1896	broad.mit.edu	37	chrX	68921178	68921178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtggggtcctccgcagagGgggcatggcctggtgggctt	19	10	0	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68921178	T	T	68921178	1	4	10	0	1	0	0	0	0	0	0	0	4943	1247	43	2		2	EDA	23	68921178	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	11584007	68921178	86349382	1851	28129											
MED12	9968	broad.mit.edu	37	chrX	70345690	70345707	+	Intron	DEL	TCCCCTTCCCTTCATTCC	-	-													tctaaacctttgcttcactgTccccttcccttcattcctcc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70345707	-	-	70345690	6	5	10	0	1	1	0	1	0	0	0	0	9521	1682	58	0		0	MED12	23	70345690	Intron	DEL	TCCCCTTCCCTTCATTCC	TCGA-05-4397-01A-01D-1265-08	1424512	70345690	84924870	1852	28130											
MED12	9968	broad.mit.edu	37	chrX	70345900	70345900	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggtggggaggatgggCagaagcggcgacgcaaccgg	19	10	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70345900	T	T	70345900	4	4	10	1	0	0	0	0	0	1	0	0	9521	711	25	4	2507	4	MED12	23	70345900	Nonsense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	210	70345900	84924660	1853	28131											
MED12	9968	broad.mit.edu	37	chrX	70346351	70346351	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaggtggggaagttggggaGatgagggtggaggcaggagt	23	2	1	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346351	A	A	70346351	1	1	10	0	1	0	0	0	0	0	0	0	9521	957	33	4		4	MED12	23	70346351	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	451	70346351	84924209	1854	28132											
HDAC8	55869	broad.mit.edu	37	chrX	71791953	71791953	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatcaaagaatgcaccaTactggcctaaaaacatcagc	5	11	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71791953	C	C	71791953	3	2	10	1	0	0	0	0	1	0	0	0	7080	1406	49	5	1141	5	HDAC8	23	71791953	Missense_Mutation	SNP	T	TCGA-05-4397-01A-01D-1265-08	1445602	71791953	83478607	1855	28133											
KIAA2022	340533	broad.mit.edu	37	chrX	73959987	73959987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccttgtggacctgttctcGctccatgtgctttcccttac	7	14	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73959987	T	T	73959987	2	4	10	1	0	0	0	0	0	0	0	1	8339	1095	38	3		3	KIAA2022	23	73959987	Silent	SNP	G	TCGA-05-4397-01A-01D-1265-08	2168034	73959987	81310573	1856	28134											
POF1B	79983	broad.mit.edu	37	chrX	84606347	84606347	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaagttttaaaacaaaatAttacttacctgatcagtatt	3	6	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84606347	C	C	84606347	1	2	10	0	1	0	0	0	0	0	0	0	12277	464	16	5		5	POF1B	23	84606347	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	10646360	84606347	70664213	1857	28135											
PCDH11X	27328	broad.mit.edu	37	chrX	91134002	91134002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgggaaagtacaattgGgtaactacacctactacttt	7	8	0	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91134002	T	T	91134002	3	4	10	1	0	0	0	0	1	0	0	0	11602	1241	43	2	2769	2	PCDH11X	23	91134002	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	6527655	91134002	64136558	1858	28136											
PCDH11X	27328	broad.mit.edu	37	chrX	91238241	91238241	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccacgtgcaagctgatcTtccacagtcatctcggtgcc	9	14	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91238241	C	C	91238241	1	2	10	0	1	0	0	0	0	0	0	0	11602	1624	56	5		5	PCDH11X	23	91238241	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	104239	91238241	64032319	1859	28137											
PCDH11X	27328	broad.mit.edu	37	chrX	91873567	91873567	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctccaccacagtcctccTctagtgcaggctactgcact	7	17	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873567	A	A	91873567	2	1	10	1	0	0	0	0	0	0	0	1	11602	1538	54	5		5	PCDH11X	23	91873567	Silent	SNP	T	TCGA-05-4397-01A-01D-1265-08	635326	91873567	63396993	1860	28138											
PCDH11X	27328	broad.mit.edu	37	chrX	91873596	91873596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctactgcacttcaccacaGcccaccatcagcacaggcct	7	18	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91873596	T	T	91873596	3	4	10	1	0	0	0	0	1	0	0	0	11602	971	34	3	3849	3	PCDH11X	23	91873596	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	29	91873596	63396964	1861	28139											
FAM133A	286499	broad.mit.edu	37	chrX	92965007	92965007	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcatctgagtcctcatctGaatcagattatgaagaggat	8	7	5	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92965007	A	A	92965007	3	1	10	1	0	0	0	0	1	0	0	0	5489	1291	45	4	591	4	FAM133A	23	92965007	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1091411	92965007	62305553	1862	28140											
SYTL4	94121	broad.mit.edu	37	chrX	99945216	99945216	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacagatggataggtagaagGagtgagtaaggaaggacagt	16	2	0	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99945216	A	A	99945216	1	1	10	0	1	0	0	0	0	0	0	0	15604	1189	41	4		4	SYTL4	23	99945216	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	6980209	99945216	55325344	1863	28141											
DRP2	1821	broad.mit.edu	37	chrX	100509734	100509734	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagactggaatccagtcttTgtattttgttcccatcagct	8	9	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100509734	C	C	100509734	1	2	10	0	1	0	0	0	0	0	0	0	4804	1827	63	5		5	DRP2	23	100509734	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	564518	100509734	54760826	1864	28142											
TCEAL6	158931	broad.mit.edu	37	chrX	101396439	101396439	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctcacccctggtgagggtTcccctaagctggccgggcct	12	15	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101396439	A	A	101396439	1	1	10	0	1	0	0	0	0	0	0	0	15797	1798	62	5		5	TCEAL6	23	101396439	Intron	SNP	T	TCGA-05-4397-01A-01D-1265-08	886705	101396439	53874121	1865	28143											
NXF3	56000	broad.mit.edu	37	chrX	102337054	102337054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgaatgagtgacacagagAgaggagtggggcgaggggga	21	3	0	5			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102337054	T	T	102337054	1	4	10	0	1	0	0	0	0	0	0	0	10880	319	11	5		5	NXF3	23	102337054	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	940615	102337054	52933506	1866	28144											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104440587	104440587	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattccagttctaattatctAtcagaactacatagcaaatt	3	8	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104440587	G	G	104440587	1	3	10	0	1	0	0	0	0	0	0	0	7732	464	16	5		5	IL1RAPL2	23	104440587	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	2103533	104440587	50829973	1867	28145											
TBC1D8B	54885	broad.mit.edu	37	chrX	106091643	106091643	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actaataaagtagaaggactGatggattatgttgtggtata	11	2	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106091643	T	T	106091643	1	4	10	0	1	0	0	0	0	0	0	0	15748	1305	45	3		3	TBC1D8B	23	106091643	Intron	SNP	G	TCGA-05-4397-01A-01D-1265-08	1651056	106091643	49178917	1868	28146											
COL4A6	1288	broad.mit.edu	37	chrX	107434774	107434774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgggacacctggaagaatAagcccacacacaaatgctca	8	13	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107434774	T	T	107434774	1	4	10	0	1	0	0	0	0	0	0	0	3727	377	13	5		5	COL4A6	23	107434774	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	1343131	107434774	47835786	1869	28147											
COL4A5	1287	broad.mit.edu	37	chrX	107834527	107834527	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattttgtttataagtaactCtagctaaaggttggcctcat	7	6	2	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107834527	G	G	107834527	1	3	10	0	1	0	0	0	0	0	0	0	3726	928	32	4		4	COL4A5	23	107834527	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	399753	107834527	47436033	1870	28148											
IRS4	8471	broad.mit.edu	37	chrX	107976561	107976561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaatagcattgctacctGtagcactgaggggaagggga	13	9	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107976561	T	T	107976561	3	4	10	1	0	0	0	0	1	0	0	0	7912	1377	48	3	763	3	IRS4	23	107976561	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	142034	107976561	47293999	1871	28149											
DCX	1641	broad.mit.edu	37	chrX	110544770	110544770	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaaaataaacccaacatAttacaatgtgtttttcaaaa	4	7	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110544770	G	G	110544770	1	3	10	0	1	0	0	0	0	0	0	0	4351	464	16	5		5	DCX	23	110544770	3'UTR	SNP	A	TCGA-05-4397-01A-01D-1265-08	2568209	110544770	44725790	1872	28150											
ALG13	79868	broad.mit.edu	37	chrX	110951500	110951502	+	In_Frame_Del	DEL	ACT	-	-													aatgcataaaggatggaaaaActactgcagccagaagtctt							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110951502	-	-	110951500	7	5	10	1	0	1	0	1	0	0	0	0	515	43	2	0	785	0	ALG13	23	110951500	In_Frame_Del	DEL	ACT	TCGA-05-4397-01A-01D-1265-08	406730	110951500	44319060	1873	28151											
ALG13	79868	broad.mit.edu	37	chrX	110996020	110996020	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgatttttaattttagatAcaaaagttttgcagtactat	5	3	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110996020	T	T	110996020	3	4	10	1	0	0	0	0	1	0	0	0	515	391	14	5	3175	5	ALG13	23	110996020	Missense_Mutation	SNP	A	TCGA-05-4397-01A-01D-1265-08	44520	110996020	44274540	1874	28152											
IL13RA2	3598	broad.mit.edu	37	chrX	114242701	114242701	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgcaactagacagattccAtatctgtccctttcaaagtg	7	10	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114242701	T	T	114242701	1	4	10	0	1	0	0	0	0	0	0	0	7700	232	8	5		5	IL13RA2	23	114242701	Intron	SNP	A	TCGA-05-4397-01A-01D-1265-08	3246681	114242701	41027859	1875	28153											
KLHL13	90293	broad.mit.edu	37	chrX	117043468	117043468	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccacatagagaaaatttcCaatgacggcgatgccatgct	8	10	0	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117043468	T	T	117043468	3	4	10	1	0	0	0	0	1	0	0	0	8440	603	21	4	817	4	KLHL13	23	117043468	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	2800767	117043468	38227092	1876	28154											
WDR44	54521	broad.mit.edu	37	chrX	117521236	117521236	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acattttctcatttgtacccCtttaaagcatatttttaaag	3	8	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117521236	G	G	117521236	1	3	10	0	1	0	0	0	0	0	0	0	17423	696	24	4		4	WDR44	23	117521236	Intron	SNP	C	TCGA-05-4397-01A-01D-1265-08	477768	117521236	37749324	1877	28155											
SMARCA1	6594	broad.mit.edu	37	chrX	128649712	128649712	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccattttcatataaagagatCaaccaattcagtcctcgaat	4	10	3	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128649712	T	T	128649712	2	4	10	1	0	0	0	0	0	0	0	1	14882	825	29	4		4	SMARCA1	23	128649712	Silent	SNP	C	TCGA-05-4397-01A-01D-1265-08	11128476	128649712	26620848	1878	28156											
OCRL	4952	broad.mit.edu	37	chrX	128724466	128724466	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaagttaccatattttgGtgtttttgtgttttctcttt	7	6	1	0			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128724466	T	T	128724466	1	4	10	0	1	0	0	0	0	0	0	0	10918	1276	44	3		3	OCRL	23	128724466	3'UTR	SNP	G	TCGA-05-4397-01A-01D-1265-08	74754	128724466	26546094	1879	28157											
IGSF1	3547	broad.mit.edu	37	chrX	130419770	130419770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactctagaactttactgGgctttgaccagcctgtctcc	7	14	2	2			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130419770	T	T	130419770	3	4	10	1	0	0	0	0	1	0	0	0	7666	1232	43	2	3805	2	IGSF1	23	130419770	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1695304	130419770	24850790	1880	28158											
IGSF1	3547	broad.mit.edu	37	chrX	130420280	130420281	+	Intron	INS	-	A	A													tcaccatgccataggaaaccINSaagtcctctgattcccaatc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130420281	A	A	130420280	6	5	10	0	1	1	1	0	0	0	0	0	7666	609	21	0		0	IGSF1	23	130420280	Intron	INS	-	TCGA-05-4397-01A-01D-1265-08	510	130420280	24850280	1881	28159											
PHF6	84295	broad.mit.edu	37	chrX	133559234	133559234	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctttcatcattgtagactAtactgtaaaaatcatagtgg	7	6	4	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133559234	G	G	133559234	2	3	10	1	0	0	0	0	0	0	0	1	11933	436	16	5		5	PHF6	23	133559234	Silent	SNP	A	TCGA-05-4397-01A-01D-1265-08	3138954	133559234	21711326	1882	28160											
ZNF75D	7626	broad.mit.edu	37	chrX	134425434	134425434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgagtttagatgccatcttCcagtgtttgattcttttctg	8	7	3	3			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134425434	A	A	134425434	3	1	10	1	0	0	0	0	1	0	0	0	18263	856	30	3	884	3	ZNF75D	23	134425434	Missense_Mutation	SNP	C	TCGA-05-4397-01A-01D-1265-08	866200	134425434	20845126	1883	28161											
GPR112	139378	broad.mit.edu	37	chrX	135433701	135433701	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatttacggaaaattcgGtaaaataatcttttgcatat	6	4	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135433701	T	T	135433701	5	4	10	1	0	0	0	0	0	0	1	0	6694	1275	44	3	6837	3	GPR112	23	135433701	Splice_Site	SNP	G	TCGA-05-4397-01A-01D-1265-08	1008267	135433701	19836859	1884	28162											
SPANXN2	494119	broad.mit.edu	37	chrX	142795501	142795501	+	Frame_Shift_Del	DEL	C	-	-													tttgaatttattttcgtatgCttcctgtagtaatacactat							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142795501	-	-	142795501	7	5	10	1	0	1	0	1	0	0	0	0	15107	796	28	0	369	0	SPANXN2	23	142795501	Frame_Shift_Del	DEL	C	TCGA-05-4397-01A-01D-1265-08	7361800	142795501	12475059	1885	28163											
SLITRK2	84631	broad.mit.edu	37	chrX	144906017	144906017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaactatatccccccacctGtgggtcagatgtgccaaaac	7	14	1	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144906017	T	T	144906017	3	4	10	1	0	0	0	0	1	0	0	0	14857	1377	48	3	2076	3	SLITRK2	23	144906017	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	2110516	144906017	10364543	1886	28164											
TKTL1	8277	broad.mit.edu	37	chrX	153556465	153556466	+	Intron	DEL	TG	-	-													gggccatactcatacacatcTgtgtgtccccaacagagtgc							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153556466	-	-	153556465	6	5	10	0	1	1	0	1	0	0	0	0	16058	1595	55	0		0	TKTL1	23	153556465	Intron	DEL	TG	TCGA-05-4397-01A-01D-1265-08	8650448	153556465	1714095	1887	28165											
IL9R	3581	broad.mit.edu	37	chrX	155232673	155232673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggagtctctgtcacagGggaaggacaaggtgagggct	17	7	2	1			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155232673	T	T	155232673	3	4	10	1	0	0	0	0	1	0	0	0	7778	1232	43	2	137	2	IL9R	23	155232673	Missense_Mutation	SNP	G	TCGA-05-4397-01A-01D-1265-08	1676208	155232673	37887	1888	28166											
PCDH11Y	83259	broad.mit.edu	37	chrY	5441348	5441348	+	Intron	DEL	G	-	-													tgtccgctccaccagcttccGgggcggcatggggcctgggg							TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5441348	-	-	5441348	6	5	10	0	1	1	0	1	0	0	0	0	11603	1131	39	0		0	PCDH11Y	24	5441348	Intron	DEL	G	TCGA-05-4397-01A-01D-1265-08		5441348	53932218	1889	28167											
MXRA8	54587	broad.mit.edu	37	chr1	1289900	1289900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtggggtctgcggggaaCgcggggtcggggcggcgtca	23	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1289900	A	A	1289900	1	1	11	0	1	0	0	0	0	0	0	0	10099	551	19	3		3	MXRA8	1	1289900	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08		1289900	247960721	1	28168											
ACTRT2	140625	broad.mit.edu	37	chr1	2938328	2938328	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcaaagcgggcctgtcTggggagtttggaccccggca	15	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2938328	A	A	2938328	2	1	11	1	0	0	0	0	0	0	0	1	219	1567	55	5		5	ACTRT2	1	2938328	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	1648428	2938328	246312293	2	28169											
AJAP1	55966	broad.mit.edu	37	chr1	4832465	4832465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcctggacatattcaCggcctataacgagaccctgc	9	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4832465	A	A	4832465	3	1	11	1	0	0	0	0	1	0	0	0	438	536	19	3	1057	3	AJAP1	1	4832465	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1894137	4832465	244418156	3	28170											
CAMTA1	23261	broad.mit.edu	37	chr1	7528088	7528088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctggtgagcttgcctaGggagacttcggctgttgcgg	16	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7528088	T	T	7528088	1	4	11	0	1	0	0	0	0	0	0	0	2639	1015	35	2		2	CAMTA1	1	7528088	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2695623	7528088	241722533	4	28171											
RERE	473	broad.mit.edu	37	chr1	8418093	8418093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagagactgcgatacagCaaaaccatgacggtagtgga	14	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8418093	A	A	8418093	1	1	11	0	1	0	0	0	0	0	0	0	13339	725	25	3		3	RERE	1	8418093	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	890005	8418093	240832528	5	28172											
CA6	765	broad.mit.edu	37	chr1	9009559	9009559	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcctgcaggggaaggcaGgttacacgtgtccctgccag	15	12	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009559	A	A	9009559	1	1	11	0	1	0	0	0	0	0	0	0	2547	1015	35	4		4	CA6	1	9009559	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	591466	9009559	240241062	6	28173											
CA6	765	broad.mit.edu	37	chr1	9019111	9019111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgaagttataggttgatGtccaaacaaggtgtgaagtc	11	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9019111	A	A	9019111	1	1	11	0	1	0	0	0	0	0	0	0	2547	1392	48	4		4	CA6	1	9019111	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	9552	9019111	240231510	7	28174											
UBE4B	10277	broad.mit.edu	37	chr1	10211596	10211596	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccaagttgttggtacCttccctgatgaagttttata	7	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10211596	T	T	10211596	3	4	11	1	0	0	0	0	1	0	0	0	17009	681	24	4	2985	4	UBE4B	1	10211596	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1192485	10211596	239039025	8	28175											
MFN2	9927	broad.mit.edu	37	chr1	12061527	12061527	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgtggtggatcgatccCaggccggggaccgcatcttc	16	12	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12061527	T	T	12061527	4	4	11	1	0	0	0	0	0	1	0	0	9617	595	21	4	912	4	MFN2	1	12061527	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1849931	12061527	237189094	9	28176											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12251948	12251948	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgcgcgccgctgcgcaAgtgccgcccgggcttcggcg	17	16	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12251948	T	T	12251948	3	4	11	1	0	0	0	0	1	0	0	0	16417	72	3	5	439	5	TNFRSF1B	1	12251948	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	190421	12251948	236998673	10	28177											
AADACL3	126767	broad.mit.edu	37	chr1	12776415	12776415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcaggaaaaatcacacaCcggaagcttctagctgaatg	11	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12776415	A	A	12776415	1	1	11	0	1	0	0	0	0	0	0	0	12	522	18	3		3	AADACL3	1	12776415	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	524467	12776415	236474206	11	28178											
PRAMEF2	65122	broad.mit.edu	37	chr1	12919018	12919018	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaggagacacttccagactCtgacggtgatggtgcaggcc	14	11	1	4	rs150885452	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12919018	A	A	12919018	3	1	11	1	0	0	0	0	1	0	0	0	12537	912	32	3	156	3	PRAMEF2	1	12919018	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	142603	12919018	236331603	12	28179											
CELA2A	63036	broad.mit.edu	37	chr1	15789916	15789916	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcaaactggctaaccccgTctccctcaccgacaagatcc	6	18	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15789916	A	A	15789916	3	1	11	1	0	0	0	0	1	0	0	0	3241	1667	58	5	410	5	CELA2A	1	15789916	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	2870898	15789916	233460705	13	28180											
CELA2A	63036	broad.mit.edu	37	chr1	15789989	15789989	+	Frame_Shift_Del	DEL	C	-	-													ctacccaacaactacccctgCtacgtcacgggctggggaag							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15789989	-	-	15789989	7	5	11	1	0	1	0	1	0	0	0	0	3241	805	28	0	483	0	CELA2A	1	15789989	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	73	15789989	233460632	14	28181											
CELA2A	63036	broad.mit.edu	37	chr1	15794056	15794056	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaccggaccagccctgaGccccaaggcactaccctgct	9	17	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15794056	A	A	15794056	1	1	11	0	1	0	0	0	0	0	0	0	3241	986	34	4		4	CELA2A	1	15794056	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4067	15794056	233456565	15	28182											
SPEN	23013	broad.mit.edu	37	chr1	16261133	16261133	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgacgatcgtccggcagacGcgggctcaggggcggggctg	19	12	1	1	rs140025266	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16261133	C	C	16261133	3	2	11	1	0	0	0	0	1	0	0	0	15156	1087	38	4	8440	4	SPEN	1	16261133	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	467077	16261133	232989488	16	28183											
CLCNKA	1187	broad.mit.edu	37	chr1	16352635	16352635	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggagctgaagaccatgttgGcgggtgtgatcttggaggac	17	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16352635	C	C	16352635	3	2	11	1	0	0	0	0	1	0	0	0	3500	1203	42	4	405	4	CLCNKA	1	16352635	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	91502	16352635	232897986	17	28184											
PADI1	29943	broad.mit.edu	37	chr1	17570704	17570704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaacgtgcgcaggaagcCctttcccttcaaatggtgga	10	13	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17570704	A	A	17570704	3	1	11	1	0	0	0	0	1	0	0	0	11471	623	22	2	2020	2	PADI1	1	17570704	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1218069	17570704	231679917	18	28185											
PADI4	23569	broad.mit.edu	37	chr1	17668497	17668497	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtggccctctcactacCtgatggtccccggtggaaag	11	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17668497	T	T	17668497	2	4	11	1	0	0	0	0	0	0	0	1	11474	680	24	4		4	PADI4	1	17668497	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	97793	17668497	231582124	19	28186											
ACTL8	81569	broad.mit.edu	37	chr1	18153020	18153020	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatgaggatgtgaccctaCtggctcactcctgagaatgg	11	10	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18153020	A	A	18153020	1	1	11	0	1	0	0	0	0	0	0	0	202	580	20	3		3	ACTL8	1	18153020	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	484523	18153020	231097601	20	28187											
IGSF21	84966	broad.mit.edu	37	chr1	18691926	18691926	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcgcccctcccgtggcctGaccccagatcccaacatcct	8	20	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18691926	T	T	18691926	2	4	11	1	0	0	0	0	0	0	0	1	7669	1277	45	3		3	IGSF21	1	18691926	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	538906	18691926	230558695	21	28188											
HSPG2	3339	broad.mit.edu	37	chr1	22157584	22157584	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatggcactgaccgccattCtgcaaagcagcccccagaag	9	15	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22157584	G	G	22157584	5	3	11	1	0	0	0	0	0	0	1	0	7500	927	32	4	1665	4	HSPG2	1	22157584	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	3465658	22157584	227093037	22	28189											
EPHA8	2046	broad.mit.edu	37	chr1	22913015	22913015	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagcccctggggaccagcTgtgtgcccgctgccctcccc	12	19	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22913015	G	G	22913015	3	3	11	1	0	0	0	0	1	0	0	0	5215	1580	55	5	880	5	EPHA8	1	22913015	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	755431	22913015	226337606	23	28190											
EPHA8	2046	broad.mit.edu	37	chr1	22924292	22924292	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgggacttcctgagcgaggCgtccatcatggggcaattcg	15	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22924292	G	G	22924292	3	3	11	1	0	0	0	0	1	0	0	0	5215	768	27	4	2269	4	EPHA8	1	22924292	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	11277	22924292	226326329	24	28191											
LUZP1	7798	broad.mit.edu	37	chr1	23417697	23417697	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcaccatgcttgctgagtGgttccaggctgcgacagtga	12	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23417697	A	A	23417697	3	1	11	1	0	0	0	0	1	0	0	0	9173	1348	47	4	180	4	LUZP1	1	23417697	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	493405	23417697	225832924	25	28192											
ASAP3	55616	broad.mit.edu	37	chr1	23769112	23769112	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccagcttggccctagacCccaaggaaagagaagcctga	10	13	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23769112	T	T	23769112	1	4	11	0	1	0	0	0	0	0	0	0	1016	623	22	4		4	ASAP3	1	23769112	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	351415	23769112	225481509	26	28193											
DHDDS	79947	broad.mit.edu	37	chr1	26784343	26784343	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accgctctcctcatcctgacAtcttgatacggacttctgga	7	14	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26784343	T	T	26784343	3	4	11	1	0	0	0	0	1	0	0	0	4518	217	8	5	626	5	DHDDS	1	26784343	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	3015231	26784343	222466278	27	28194											
AHDC1	27245	broad.mit.edu	37	chr1	27877209	27877209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccatcttcaccaccatgCgccgcacgccccggcacttg	9	19	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27877209	A	A	27877209	3	1	11	1	0	0	0	0	1	0	0	0	412	768	27	3	3397	3	AHDC1	1	27877209	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1092866	27877209	221373412	28	28195											
SFRS4	6429	broad.mit.edu	37	chr1	29476680	29476680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcggcttctgctcttacgGgaatgtctgcttcgagagcg	12	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29476680	T	T	29476680	2	4	11	1	0	0	0	0	0	0	0	1	14292	1219	43	2		2	SFRS4	1	29476680	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1599471	29476680	219773941	29	28196											
PTPRU	10076	broad.mit.edu	37	chr1	29651669	29651669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaccttcaggttccaagGccccgcccctcagcttttgc	7	17	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29651669	T	T	29651669	1	4	11	0	1	0	0	0	0	0	0	0	12921	1218	42	3		3	PTPRU	1	29651669	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	174989	29651669	219598952	30	28197											
LAPTM5	7805	broad.mit.edu	37	chr1	31212862	31212862	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagcctgatatcctcatgCatccccttcccaccctctcc	3	22	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31212862	T	T	31212862	1	4	11	0	1	0	0	0	0	0	0	0	8698	725	25	4		4	LAPTM5	1	31212862	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1561193	31212862	218037759	31	28198											
TMEM39B	55116	broad.mit.edu	37	chr1	32566053	32566053	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcccccaggtggactgaaGaatgcatgtggccgcagggc	16	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32566053	A	A	32566053	3	1	11	1	0	0	0	0	1	0	0	0	16285	943	33	4	1156	4	TMEM39B	1	32566053	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1353191	32566053	216684568	32	28199											
BSDC1	55108	broad.mit.edu	37	chr1	32859677	32859677	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaagggcacgggcccggcTtaccttctctttgactgctt	11	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32859677	A	A	32859677	1	1	11	0	1	0	0	0	0	0	0	0	1537	1624	56	5		5	BSDC1	1	32859677	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	293624	32859677	216390944	33	28200											
CSMD2	114784	broad.mit.edu	37	chr1	33998682	33998682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcttgcctgtccagctgCcatccgccttgcaggtgcgg	14	15	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33998682	A	A	33998682	3	1	11	1	0	0	0	0	1	0	0	0	3979	739	26	3	784	3	CSMD2	1	33998682	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1139005	33998682	215251939	34	28201											
GRIK3	2899	broad.mit.edu	37	chr1	37271748	37271748	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttggagtcaatgaggccCccgatctgggtgaggttgca	14	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37271748	A	A	37271748	2	1	11	1	0	0	0	0	0	0	0	1	6841	610	22	2		2	GRIK3	1	37271748	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	3273066	37271748	211978873	35	28202											
GRIK3	2899	broad.mit.edu	37	chr1	37324781	37324781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcactgcagggagttcacGgtcatctgtggtgcccgctg	15	11	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37324781	T	T	37324781	2	4	11	1	0	0	0	0	0	0	0	1	6841	1103	39	1		1	GRIK3	1	37324781	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	53033	37324781	211925840	36	28203											
SNIP1	79753	broad.mit.edu	37	chr1	38019721	38019721	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggcgggaggtgcgactTctgggctgagacgctcctgc	19	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38019721	A	A	38019721	3	1	11	1	0	0	0	0	1	0	0	0	14962	1783	62	5	1096	5	SNIP1	1	38019721	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	694940	38019721	211230900	37	28204											
RRAGC	64121	broad.mit.edu	37	chr1	39317235	39317235	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcttctgaacaaatcaagTtaatagttttccgcctgtct	6	9	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39317235	C	C	39317235	1	2	11	0	1	0	0	0	0	0	0	0	13785	1740	60	5		5	RRAGC	1	39317235	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1297514	39317235	209933386	38	28205											
KIAA0754	643314	broad.mit.edu	37	chr1	39880114	39880114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctacatgggaaagtgCctctggctgcaaccgctgga	13	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39880114	A	A	39880114	3	1	11	1	0	0	0	0	1	0	0	0	8262	739	26	3	4179	3	KIAA0754	1	39880114	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	562879	39880114	209370507	39	28206											
PTPRF	5792	broad.mit.edu	37	chr1	44083587	44083587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagaagtcccgggtgaGgctgcagggccctgccagga	19	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44083587	T	T	44083587	1	4	11	0	1	0	0	0	0	0	0	0	12909	1015	35	2		2	PTPRF	1	44083587	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4203473	44083587	205167034	40	28207											
KIF2C	11004	broad.mit.edu	37	chr1	45232525	45232525	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagactggcttgagctctctGagatgaccgagcagccagac	12	12	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45232525	T	T	45232525	4	4	11	1	0	0	0	0	0	1	0	0	8369	1291	45	3	2077	3	KIF2C	1	45232525	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1148938	45232525	204018096	41	28208											
EIF2B3	8891	broad.mit.edu	37	chr1	45444147	45444147	+	Intron	DEL	A	-	-													tgacttctataggacaaaagAaaaaaagaaagaaaaacaaa							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45444147	-	-	45444147	6	5	11	0	1	1	0	1	0	0	0	0	5042	261	9	0		0	EIF2B3	1	45444147	Intron	DEL	A	TCGA-05-4398-01A-01D-1265-08	211622	45444147	203806474	42	28209											
MUTYH	4595	broad.mit.edu	37	chr1	45797911	45797911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggggtacacactgtgGcccctagctccatggctgct	13	13	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45797911	T	T	45797911	3	4	11	1	0	0	0	0	1	0	0	0	10087	1203	42	3	817	3	MUTYH	1	45797911	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	353764	45797911	203452710	43	28210											
TMEM69	51249	broad.mit.edu	37	chr1	46159475	46159475	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccaactggtttaaagccctGaggatagtagtcactttatt	8	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46159475	A	A	46159475	2	1	11	1	0	0	0	0	0	0	0	1	16321	1277	45	4		4	TMEM69	1	46159475	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	361564	46159475	203091146	44	28211											
IPP	3652	broad.mit.edu	37	chr1	46206734	46206734	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caatgctaagctcttcacttCgcaaaattttgatcagctga	6	10	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46206734	T	T	46206734	3	4	11	1	0	0	0	0	1	0	0	0	7870	884	31	4	1321	4	IPP	1	46206734	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	47259	46206734	203043887	45	28212											
RAD54L	8438	broad.mit.edu	37	chr1	46727024	46727024	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcatgttggagtcctccaGaaaggaagtgttggtctggt	13	7	2	1	rs58878309		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46727024	A	A	46727024	2	1	11	1	0	0	0	0	0	0	0	1	13101	933	33	4		4	RAD54L	1	46727024	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	520290	46727024	202523597	46	28213											
CYP4Z1	199974	broad.mit.edu	37	chr1	47582406	47582406	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattctcagctggattaaggTaaagactcaagctggtgaac	10	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47582406	A	A	47582406	5	1	11	1	0	0	0	0	0	0	1	0	4227	1652	57	5	1393	5	CYP4Z1	1	47582406	Splice_Site	SNP	T	TCGA-05-4398-01A-01D-1265-08	855382	47582406	201668215	47	28214											
SLC5A9	200010	broad.mit.edu	37	chr1	48708153	48708153	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacgcctcacatggtggactCggaactgccccctctctgag	10	16	2	1	rs138580488		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48708153	T	T	48708153	3	4	11	1	0	0	0	0	1	0	0	0	14786	875	31	4	1831	4	SLC5A9	1	48708153	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1125747	48708153	200542468	48	28215											
USP24	23358	broad.mit.edu	37	chr1	55549430	55549430	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattaggaaaagatattaggAaaaaaattatttaccttttg	6	2	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55549430	C	C	55549430	1	2	11	0	1	0	0	0	0	0	0	0	17181	261	9	5		5	USP24	1	55549430	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	6841277	55549430	193701191	49	28216											
C8A	731	broad.mit.edu	37	chr1	57349153	57349153	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctatccttttttttttcaGgccctggcagatactggaat	7	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57349153	T	T	57349153	5	4	11	1	0	0	0	0	0	0	1	0	2441	1014	35	2	676	2	C8A	1	57349153	Splice_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08	1799723	57349153	191901468	50	28217											
C8B	732	broad.mit.edu	37	chr1	57420396	57420396	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattccccagtattggtccaTttcatgctgacattttttat	5	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57420396	G	G	57420396	3	3	11	1	0	0	0	0	1	0	0	0	2442	1493	52	5	1315	5	C8B	1	57420396	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	71243	57420396	191830225	51	28218											
C8B	732	broad.mit.edu	37	chr1	57422239	57422239	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattttttaaggtatataatGaggataataataacacctac	6	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57422239	A	A	57422239	1	1	11	0	1	0	0	0	0	0	0	0	2442	1305	45	4		4	C8B	1	57422239	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1843	57422239	191828382	52	28219											
DAB1	1600	broad.mit.edu	37	chr1	58522129	58522129	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggccctttttggcacgaccAttgttccttcttttctttgt	7	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58522129	G	G	58522129	1	3	11	0	1	0	0	0	0	0	0	0	4250	232	8	5		5	DAB1	1	58522129	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1099890	58522129	190728492	53	28220											
INADL	10207	broad.mit.edu	37	chr1	62504737	62504737	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgggaacattatgatccAgaagcatgatggcttcacag	10	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62504737	T	T	62504737	1	4	11	0	1	0	0	0	0	0	0	0	7801	203	7	5		5	INADL	1	62504737	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	3982608	62504737	186745884	54	28221											
DOCK7	85440	broad.mit.edu	37	chr1	62979532	62979532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagatcaaaaggcttcgaCttgattctgctgaaaaggta	10	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62979532	A	A	62979532	3	1	11	1	0	0	0	0	1	0	0	0	4732	565	20	3	2524	3	DOCK7	1	62979532	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	474795	62979532	186271089	55	28222											
SGIP1	84251	broad.mit.edu	37	chr1	67091481	67091481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaccttcaaaatatgttcActtgaatgttgctgagagag	8	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67091481	T	T	67091481	1	4	11	0	1	0	0	0	0	0	0	0	14319	174	6	5		5	SGIP1	1	67091481	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	4111949	67091481	182159140	56	28223											
SGIP1	84251	broad.mit.edu	37	chr1	67105415	67105415	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctttgtccctttgttttTattcaaatgttttccttcta	4	8	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67105415	C	C	67105415	1	2	11	0	1	0	0	0	0	0	0	0	14319	1769	61	5		5	SGIP1	1	67105415	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	13934	67105415	182145206	57	28224											
SGIP1	84251	broad.mit.edu	37	chr1	67155934	67155934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatagcacccttagcgcGggctgaaagcacttcttcaa	8	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67155934	T	T	67155934	3	4	11	1	0	0	0	0	1	0	0	0	14319	1116	39	1	1571	1	SGIP1	1	67155934	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	50519	67155934	182094687	58	28225											
LRRC7	57554	broad.mit.edu	37	chr1	70488916	70488916	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggccaggtgtgatcagcaGatccaagatatgcccgtccc	12	12	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70488916	C	C	70488916	3	2	11	1	0	0	0	0	1	0	0	0	9107	933	33	4	1597	4	LRRC7	1	70488916	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3332982	70488916	178761705	59	28226											
LRRC7	57554	broad.mit.edu	37	chr1	70505055	70505055	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaactgataggtacggcaGacccccatataggggagggc	13	12	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70505055	T	T	70505055	3	4	11	1	0	0	0	0	1	0	0	0	9107	942	33	3	3508	3	LRRC7	1	70505055	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	16139	70505055	178745566	60	28227											
PTGER3	5733	broad.mit.edu	37	chr1	71318473	71318473	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttcttttacaaaaAgagagtcatggagcttccag	7	6	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71318473	C	C	71318473	1	2	11	0	1	0	0	0	0	0	0	0	12850	87	3	5		5	PTGER3	1	71318473	3'UTR	SNP	A	TCGA-05-4398-01A-01D-1265-08	813418	71318473	177932148	61	28228											
PTGER3	5733	broad.mit.edu	37	chr1	71418573	71418573	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaacacagcactcctgTagttattttcttcatgttat	4	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71418573	C	C	71418573	1	2	11	0	1	0	0	0	0	0	0	0	12850	1653	57	5		5	PTGER3	1	71418573	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	100100	71418573	177832048	62	28229											
TNNI3K	51086	broad.mit.edu	37	chr1	74819086	74819086	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactagttctatatgcttatCaatgattaagaataatggta	6	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74819086	G	G	74819086	1	3	11	0	1	0	0	0	0	0	0	0	16452	841	29	4		4	TNNI3K	1	74819086	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3400513	74819086	174431535	63	28230											
C1orf173	127254	broad.mit.edu	37	chr1	75037434	75037434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtttccttctccttcCatgtccccgtccccttccga	6	17	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037434	A	A	75037434	3	1	11	1	0	0	0	0	1	0	0	0	2034	594	21	2	636	2	C1orf173	1	75037434	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	218348	75037434	174213187	64	28231											
SLC44A5	204962	broad.mit.edu	37	chr1	75684224	75684224	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggatatcgtgggatgtcatCaggttttttcatggcccagt	12	7	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75684224	A	A	75684224	3	1	11	1	0	0	0	0	1	0	0	0	14753	826	29	3	822	3	SLC44A5	1	75684224	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	646790	75684224	173566397	65	28232											
SLC44A5	204962	broad.mit.edu	37	chr1	76047832	76047832	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggtcccgaatatggcacAgaaattgcctcaagaaaccc	8	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76047832	T	T	76047832	1	4	11	0	1	0	0	0	0	0	0	0	14753	203	7	5		5	SLC44A5	1	76047832	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	363608	76047832	173202789	66	28233											
MSH4	4438	broad.mit.edu	37	chr1	76313920	76313920	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagatttcttgatacagagCagcttctttctgttttagtc	7	8	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76313920	T	T	76313920	4	4	11	1	0	0	0	0	0	1	0	0	9966	711	25	4	1219	4	MSH4	1	76313920	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	266088	76313920	172936701	67	28234											
MSH4	4438	broad.mit.edu	37	chr1	76363740	76363740	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatacctacaaactttctaAgggactcacagaagagaaaa	7	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76363740	T	T	76363740	3	4	11	1	0	0	0	0	1	0	0	0	9966	72	3	5	2574	5	MSH4	1	76363740	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	49820	76363740	172886881	68	28235											
ASB17	127247	broad.mit.edu	37	chr1	76397818	76397818	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtccacatacctcagaatTtttgccagtgatctgtaaat	6	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76397818	A	A	76397818	3	1	11	1	0	0	0	0	1	0	0	0	1025	1838	64	5	740	5	ASB17	1	76397818	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	34078	76397818	172852803	69	28236											
AK5	26289	broad.mit.edu	37	chr1	77752625	77752625	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatattttgttatatttcaGagccttttgaatggactgat	7	5	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77752625	T	T	77752625	5	4	11	1	0	0	0	0	0	0	1	0	443	956	33	3	66	3	AK5	1	77752625	Splice_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08	1354807	77752625	171497996	70	28237											
FUBP1	8880	broad.mit.edu	37	chr1	78432683	78432683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttggttgaaagattctAaagtatgttttgatcatgtt	8	2	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78432683	G	G	78432683	1	3	11	0	1	0	0	0	0	0	0	0	6152	377	13	5		5	FUBP1	1	78432683	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	680058	78432683	170817938	71	28238											
IFI44	10561	broad.mit.edu	37	chr1	79120848	79120848	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttttccaagggcatgtaaCgcatcaggctttggtgggca	13	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79120848	G	G	79120848	3	3	11	1	0	0	0	0	1	0	0	0	7587	536	19	4	654	4	IFI44	1	79120848	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	688165	79120848	170129773	72	28239											
LPHN2	23266	broad.mit.edu	37	chr1	82409232	82409232	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcctctatgtggttaggtCagtttatcaagacaatgaaa	9	6	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82409232	A	A	82409232	4	1	11	1	0	0	0	0	0	1	0	0	9003	838	29	3	991	3	LPHN2	1	82409232	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3288384	82409232	166841389	73	28240											
LPHN2	23266	broad.mit.edu	37	chr1	82446566	82446566	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatttatggcatgatttgTattttttacaaattcgtcag	6	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82446566	G	G	82446566	1	3	11	0	1	0	0	0	0	0	0	0	9003	1653	57	5		5	LPHN2	1	82446566	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	37334	82446566	166804055	74	28241											
DDAH1	23576	broad.mit.edu	37	chr1	85787122	85787122	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttgccggcaaccggggGggactctgcagctcaggagt	17	11	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85787122	A	A	85787122	1	1	11	0	1	0	0	0	0	0	0	0	4354	1247	43	4		4	DDAH1	1	85787122	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	3340556	85787122	163463499	75	28242											
CYR61	3491	broad.mit.edu	37	chr1	86047600	86047600	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctacctttctcttttggtGatctttgcagctcagtcaga	7	10	5	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86047600	T	T	86047600	1	4	11	0	1	0	0	0	0	0	0	0	4232	1305	45	3		3	CYR61	1	86047600	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	260478	86047600	163203021	76	28243											
COL24A1	255631	broad.mit.edu	37	chr1	86307879	86307879	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattattctgaaaggaaaaaTaggattcactgtctaggagg	10	5	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86307879	C	C	86307879	1	2	11	0	1	0	0	0	0	0	0	0	3715	1421	49	5		5	COL24A1	1	86307879	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	260279	86307879	162942742	77	28244											
COL24A1	255631	broad.mit.edu	37	chr1	86426884	86426884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatggctaatatgattcctAaaaatgcttacagctgatta	6	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86426884	G	G	86426884	1	3	11	0	1	0	0	0	0	0	0	0	3715	377	13	5		5	COL24A1	1	86426884	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	119005	86426884	162823737	78	28245											
GBP4	115361	broad.mit.edu	37	chr1	89657192	89657192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattttgggattcttgcctGtggaattgtaaaaaagaggg	13	3	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89657192	T	T	89657192	1	4	11	0	1	0	0	0	0	0	0	0	6338	1392	48	3		3	GBP4	1	89657192	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3230308	89657192	159593429	79	28246											
ZNF644	84146	broad.mit.edu	37	chr1	91402967	91402967	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgagaaagtattttccaCatagattccattaaagaagg	8	5	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91402967	T	T	91402967	1	4	11	0	1	0	0	0	0	0	0	0	18187	493	17	4		4	ZNF644	1	91402967	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1745775	91402967	157847654	80	28247											
HFM1	164045	broad.mit.edu	37	chr1	91728125	91728125	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatttgataaagaaatatcCgacatctcatgtgatgaaac	7	6	1	4	rs148254635		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91728125	A	A	91728125	2	1	11	1	0	0	0	0	0	0	0	1	7150	639	23	1		1	HFM1	1	91728125	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	325158	91728125	157522496	81	28248											
HFM1	164045	broad.mit.edu	37	chr1	91781705	91781705	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagatacatcacagtttcttTtatctgggttccaaaggggg	10	7	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91781705	C	C	91781705	3	2	11	1	0	0	0	0	1	0	0	0	7150	1850	64	5	1424	5	HFM1	1	91781705	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	53580	91781705	157468916	82	28249											
GFI1	2672	broad.mit.edu	37	chr1	92941703	92941703	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtgtttgcggctgtgggtGatgaggttggagctctggct	19	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92941703	A	A	92941703	2	1	11	1	0	0	0	0	0	0	0	1	6403	1280	45	4		4	GFI1	1	92941703	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1159998	92941703	156308918	83	28250											
LPPR5	163404	broad.mit.edu	37	chr1	99470110	99470110	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagaagaagccctgcaCgttcacggtgaacgtgtccg	14	11	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99470110	T	T	99470110	3	4	11	1	0	0	0	0	1	0	0	0	9015	536	19	4	871	4	LPPR5	1	99470110	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	6528407	99470110	149780511	84	28251											
AGL	178	broad.mit.edu	37	chr1	100361836	100361836	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactttgttgtgtttttttTgttaggcttacctcattttt	6	5	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100361836	C	C	100361836	1	2	11	0	1	0	0	0	0	0	0	0	384	1827	63	5		5	AGL	1	100361836	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	891726	100361836	148888785	85	28252											
VCAM1	7412	broad.mit.edu	37	chr1	101194849	101194849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacgctgaccctgagccCtgtgagttttgagaacgaac	10	12	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101194849	A	A	101194849	3	1	11	1	0	0	0	0	1	0	0	0	17264	681	24	2	1133	2	VCAM1	1	101194849	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	833013	101194849	148055772	86	28253											
COL11A1	1301	broad.mit.edu	37	chr1	103399993	103399993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggagtaaacaatgacaGgatcatcttacctgaagacc	9	8	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103399993	T	T	103399993	1	4	11	0	1	0	0	0	0	0	0	0	3699	1015	35	2		2	COL11A1	1	103399993	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2205144	103399993	145850628	87	28254											
COL11A1	1301	broad.mit.edu	37	chr1	103461371	103461371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttgaataaatttaaatGttaacataatacacagaaat	4	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103461371	T	T	103461371	1	4	11	0	1	0	0	0	0	0	0	0	3699	1392	48	3		3	COL11A1	1	103461371	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	61378	103461371	145789250	88	28255											
GPSM2	29899	broad.mit.edu	37	chr1	109465136	109465136	+	Frame_Shift_Del	DEL	A	-	-													tcagagatgttgcttacaagAaaagaactgccatacagctt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109465136	-	-	109465136	7	5	11	1	0	1	0	1	0	0	0	0	6801	246	9	0	1584	0	GPSM2	1	109465136	Frame_Shift_Del	DEL	A	TCGA-05-4398-01A-01D-1265-08	6003765	109465136	139785485	89	28256											
C1orf88	128344	broad.mit.edu	37	chr1	111890448	111890448	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgcatgcatttgcacaggAgtgcaaagggcagagagcaa	14	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111890448	G	G	111890448	1	3	11	0	1	0	0	0	0	0	0	0	2087	319	11	5		5	C1orf88	1	111890448	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2425312	111890448	137360173	90	28257											
KCND3	3752	broad.mit.edu	37	chr1	112318702	112318702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgtccagtggttttaCaaggcggagaccttgacaac	10	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112318702	A	A	112318702	3	1	11	1	0	0	0	0	1	0	0	0	8090	477	17	3	6	3	KCND3	1	112318702	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	428254	112318702	136931919	91	28258											
OLFML3	56944	broad.mit.edu	37	chr1	114524191	114524191	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctataacacccgtcctgccAgtcgggcccgcatccagtgc	9	17	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114524191	T	T	114524191	3	4	11	1	0	0	0	0	1	0	0	0	10954	188	7	5	1031	5	OLFML3	1	114524191	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	2205489	114524191	134726430	92	28259											
AMPD1	270	broad.mit.edu	37	chr1	115220534	115220534	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattggttccgcctcaccttGatgatagtggcaaaatattc	9	9	1	2	rs144014236	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115220534	C	C	115220534	3	2	11	1	0	0	0	0	1	0	0	0	585	1280	45	4	1054	4	AMPD1	1	115220534	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	696343	115220534	134030087	93	28260											
CSDE1	7812	broad.mit.edu	37	chr1	115269042	115269042	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgctcattaacaccatatCacttccacaccaatctcctt	2	15	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115269042	A	A	115269042	1	1	11	0	1	0	0	0	0	0	0	0	3963	841	29	3		3	CSDE1	1	115269042	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	48508	115269042	133981579	94	28261											
C1orf161	126868	broad.mit.edu	37	chr1	116669952	116669952	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcattgtgatccttcacgtGctacagacattgtgaaagtt	10	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116669952	C	C	116669952	1	2	11	0	1	0	0	0	0	0	0	0	2029	1334	46	4		4	C1orf161	1	116669952	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1400910	116669952	132580669	95	28262											
CD2	914	broad.mit.edu	37	chr1	117302948	117302948	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctaactgactccatccCccactgtataaatagatatg	5	13	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117302948	A	A	117302948	1	1	11	0	1	0	0	0	0	0	0	0	3009	638	22	2		2	CD2	1	117302948	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	632996	117302948	131947673	96	28263											
WDR3	10885	broad.mit.edu	37	chr1	118492583	118492583	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgtctgaatttgtatactCatttattttttcttgatgtt	5	4	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118492583	T	T	118492583	1	4	11	0	1	0	0	0	0	0	0	0	17412	841	29	4		4	WDR3	1	118492583	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1189635	118492583	130758038	97	28264											
SPAG17	200162	broad.mit.edu	37	chr1	118570892	118570892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctaccccatatagcaCttacctgtagattcttgtcc	4	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118570892	A	A	118570892	1	1	11	0	1	0	0	0	0	0	0	0	15095	580	20	3		3	SPAG17	1	118570892	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	78309	118570892	130679729	98	28265											
TBX15	6913	broad.mit.edu	37	chr1	119427774	119427774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagctggccaccgtaggCttccatcttgctgttgccag	10	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119427774	A	A	119427774	3	1	11	1	0	0	0	0	1	0	0	0	15774	797	28	3	422	3	TBX15	1	119427774	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	856882	119427774	129822847	99	28266											
TBX15	6913	broad.mit.edu	37	chr1	119427872	119427872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtttcagagggctgagtgGctgaagtggtgccactctga	16	7	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119427872	T	T	119427872	3	4	11	1	0	0	0	0	1	0	0	0	15774	1203	42	3	520	3	TBX15	1	119427872	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	98	119427872	129822749	100	28267											
REG4	83998	broad.mit.edu	37	chr1	120341036	120341037	+	Intron	DNP	CC	AA	AA													gaatgaggagggcagtggtcCcctgtgcctatttttgtgct							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	120341037	AA	AA	120341036	1	1	11	0	1	0	0	0	0	0	0	0	13322	638	22	2		2	REG4	1	120341036	Intron	DNP	CC	TCGA-05-4398-01A-01D-1265-08	913164	120341036	128909585	101	28268											
PDE4DIP	9659	broad.mit.edu	37	chr1	144922182	144922182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcctacgtgaccctcaCatacgtgaagttgtccaagc	8	14	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144922182	A	A	144922182	1	1	11	0	1	0	0	0	0	0	0	0	11737	493	17	3		3	PDE4DIP	1	144922182	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	24581146	144922182	104328439	102	28269											
ANKRD35	148741	broad.mit.edu	37	chr1	145561457	145561457	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacctgctggctgagagtaCacaagagctaaagaagcagc	13	9	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145561457	T	T	145561457	3	4	11	1	0	0	0	0	1	0	0	0	664	478	17	4	1183	4	ANKRD35	1	145561457	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	639275	145561457	103689164	103	28270											
HORMAD1	84072	broad.mit.edu	37	chr1	150689710	150689711	+	Missense_Mutation	DNP	CC	AA	AA													tagaagcctcttcactaacaCcaaagactggtgttcagttg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	150689711	AA	AA	150689710	3	1	11	1	0	0	0	0	1	0	0	0	7353	507	18	3	1154	3	HORMAD1	1	150689710	Missense_Mutation	DNP	CC	TCGA-05-4398-01A-01D-1265-08	5128253	150689710	98560911	104	28271											
PIP5K1A	8394	broad.mit.edu	37	chr1	151205138	151205138	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaagacagtccaacataaaGaggcggaatttctgcagaag	10	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151205138	T	T	151205138	4	4	11	1	0	0	0	0	0	1	0	0	12034	943	33	3	624	3	PIP5K1A	1	151205138	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	515428	151205138	98045483	105	28272											
PI4KB	5298	broad.mit.edu	37	chr1	151298722	151298722	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtagtcaaccaagtgtaatCtgatagggacttcttcaaaa	8	7	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151298722	T	T	151298722	1	4	11	0	1	0	0	0	0	0	0	0	11969	928	32	4		4	PI4KB	1	151298722	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	93584	151298722	97951899	106	28273											
PSMB4	5692	broad.mit.edu	37	chr1	151373127	151373127	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagtacctgtgtagtatctCttctgtctcttctccccaag	6	13	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151373127	T	T	151373127	1	4	11	0	1	0	0	0	0	0	0	0	12785	928	32	4		4	PSMB4	1	151373127	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	74405	151373127	97877494	107	28274											
TUFT1	7286	broad.mit.edu	37	chr1	151537034	151537034	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagaagctccgggaggatAtaagtagcaagcttgacagg	13	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151537034	G	G	151537034	3	3	11	1	0	0	0	0	1	0	0	0	16898	449	16	5	376	5	TUFT1	1	151537034	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	163907	151537034	97713587	108	28275											
HRNR	388697	broad.mit.edu	37	chr1	152193135	152193135	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgagccagacccgtgttGgccgtggctggaggagtgcc	16	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152193135	A	A	152193135	4	1	11	1	0	0	0	0	0	1	0	0	7426	1357	47	4	7586	4	HRNR	1	152193135	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	656101	152193135	97057486	109	28276											
FLG	2312	broad.mit.edu	37	chr1	152282982	152282982	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtcttcctccagtgctGggtgcagtctgtccgtgtgt	12	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152282982	T	T	152282982	2	4	11	1	0	0	0	0	0	0	0	1	5979	1335	47	2		2	FLG	1	152282982	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	89847	152282982	96967639	110	28277											
FLG	2312	broad.mit.edu	37	chr1	152283359	152283359	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtccatgagaggaagactCtgtgtgatgagtgcctgatt	13	7	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283359	A	A	152283359	4	1	11	1	0	0	0	0	0	1	0	0	5979	922	32	3	8186	3	FLG	1	152283359	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	377	152283359	96967262	111	28278											
KPRP	448834	broad.mit.edu	37	chr1	152733252	152733252	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtccagagtcaccactGcagcgatgtccacctcctgc	9	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152733252	A	A	152733252	2	1	11	1	0	0	0	0	0	0	0	1	8507	1306	46	4		4	KPRP	1	152733252	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	449893	152733252	96517369	112	28279											
IVL	3713	broad.mit.edu	37	chr1	152882228	152882228	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttcctttgccttcagcctGtgcatcagacctcttctgtc	6	14	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152882228	C	C	152882228	1	2	11	0	1	0	0	0	0	0	0	0	7999	1392	48	4		4	IVL	1	152882228	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	148976	152882228	96368393	113	28280											
LOR	4014	broad.mit.edu	37	chr1	153233535	153233536	+	In_Frame_Ins	INS	-	CGG	CGG													ggtggtggctgcggcttcttINScggcggcggcggctcagggg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CGG	153233536	CGG	CGG	153233535	7	5	11	1	0	1	1	0	0	0	0	0	8984	1783	62	0	112	0	LOR	1	153233535	In_Frame_Ins	INS	-	TCGA-05-4398-01A-01D-1265-08	351307	153233535	96017086	114	28281											
PGLYRP4	57115	broad.mit.edu	37	chr1	153312856	153312856	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtacccagacccactcaCttataaccaatgtcgcatga	6	13	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153312856	A	A	153312856	5	1	11	1	0	0	0	0	0	0	1	0	11891	579	20	3	308	3	PGLYRP4	1	153312856	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	79321	153312856	95937765	115	28282											
NPR1	4881	broad.mit.edu	37	chr1	153655054	153655054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatatggatcccgagaatGgtgccttcagggtaagtttg	15	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153655054	T	T	153655054	3	4	11	1	0	0	0	0	1	0	0	0	10689	1348	47	2	1270	2	NPR1	1	153655054	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	342198	153655054	95595567	116	28283											
INTS3	65123	broad.mit.edu	37	chr1	153745702	153745702	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaaaccgaagcctaccaagCggaaacgaaaagggtcctct	10	12	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153745702	T	T	153745702	3	4	11	1	0	0	0	0	1	0	0	0	7849	759	27	4	3203	4	INTS3	1	153745702	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	90648	153745702	95504919	117	28284											
CRTC2	200186	broad.mit.edu	37	chr1	153924976	153924976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgctcagcagagaaccCtggaaggcctgccccatggc	12	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153924976	A	A	153924976	1	1	11	0	1	0	0	0	0	0	0	0	3932	696	24	2		2	CRTC2	1	153924976	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	179274	153924976	95325645	118	28285											
CHRNB2	1141	broad.mit.edu	37	chr1	154544111	154544111	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagatgacgttgtgcatctCagtgctgctggcgctcacgg	14	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154544111	A	A	154544111	4	1	11	1	0	0	0	0	0	1	0	0	3422	838	29	3	830	3	CHRNB2	1	154544111	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	619135	154544111	94706510	119	28286											
ADAR	103	broad.mit.edu	37	chr1	154571062	154571062	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacaacctggaatttaaatCttgacggaaagtgattagat	9	5	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154571062	A	A	154571062	5	1	11	1	0	0	0	0	0	0	1	0	281	927	32	3	2131	3	ADAR	1	154571062	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	26951	154571062	94679559	120	28287											
KCNN3	3782	broad.mit.edu	37	chr1	154821910	154821910	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcctgctgcctccctttgCcggcacatcacagctgacta	9	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154821910	G	G	154821910	1	3	11	0	1	0	0	0	0	0	0	0	8150	754	26	4		4	KCNN3	1	154821910	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	250848	154821910	94428711	121	28288											
MUC1	4582	broad.mit.edu	37	chr1	155161953	155161953	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggggctgtggctggagagTacgctgctggtcatactcac	15	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155161953	C	C	155161953	2	2	11	1	0	0	0	0	0	0	0	1	10064	1653	57	5		5	MUC1	1	155161953	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	340043	155161953	94088668	122	28289											
PKLR	5313	broad.mit.edu	37	chr1	155264023	155264023	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacctcaaggcctcactccaGacctgtgtggcacagacaac	8	15	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155264023	T	T	155264023	1	4	11	0	1	0	0	0	0	0	0	0	12071	957	33	3		3	PKLR	1	155264023	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	102070	155264023	93986598	123	28290											
ASH1L	55870	broad.mit.edu	37	chr1	155319424	155319424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttagtagaaagattccaCcatacaagggaggcaagcat	11	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155319424	A	A	155319424	1	1	11	0	1	0	0	0	0	0	0	0	1045	522	18	3		3	ASH1L	1	155319424	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	55401	155319424	93931197	124	28291											
GON4L	54856	broad.mit.edu	37	chr1	155822978	155822978	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaaatcaatatcccctttCagaaatactactctgtaaag	3	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155822978	T	T	155822978	1	4	11	0	1	0	0	0	0	0	0	0	6636	841	29	4		4	GON4L	1	155822978	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	503554	155822978	93427643	125	28292											
KIAA0907	22889	broad.mit.edu	37	chr1	155895871	155895871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagactcagccttcttagtcCtccagttgtcatcaagttta	6	12	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155895871	T	T	155895871	1	4	11	0	1	0	0	0	0	0	0	0	8269	696	24	4		4	KIAA0907	1	155895871	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	72893	155895871	93354750	126	28293											
ARHGEF2	9181	broad.mit.edu	37	chr1	155931973	155931973	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccagcaggatgcactccTgtaccccgtgccgcttgagc	10	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155931973	A	A	155931973	3	1	11	1	0	0	0	0	1	0	0	0	905	1580	55	5	1870	5	ARHGEF2	1	155931973	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	36102	155931973	93318648	127	28294											
PMF1	11243	broad.mit.edu	37	chr1	156183039	156183039	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgcgaggtcaggacggcCgcaggctggcgcgcggtgac	18	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156183039	T	T	156183039	1	4	11	0	1	0	0	0	0	0	0	0	12228	667	23	4		4	PMF1	1	156183039	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	251066	156183039	93067582	128	28295											
GPATCH4	54865	broad.mit.edu	37	chr1	156565192	156565192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcctccttgccttttcctCcttcctccaagacccccatc	3	21	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156565192	T	T	156565192	3	4	11	1	0	0	0	0	1	0	0	0	6658	855	30	4	190	4	GPATCH4	1	156565192	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	382153	156565192	92685429	129	28296											
HAPLN2	60484	broad.mit.edu	37	chr1	156593565	156593565	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacttggggcagtgaggattGggggttcctgccactgtggc	17	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156593565	C	C	156593565	1	2	11	0	1	0	0	0	0	0	0	0	7021	1363	47	4		4	HAPLN2	1	156593565	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	28373	156593565	92657056	130	28297											
BCAN	63827	broad.mit.edu	37	chr1	156617860	156617860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actatggtgtggtggacccgGatgacctctatgatgtgtac	13	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156617860	T	T	156617860	3	4	11	1	0	0	0	0	1	0	0	0	1350	1174	41	3	741	3	BCAN	1	156617860	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	24295	156617860	92632761	131	28298											
NTRK1	4914	broad.mit.edu	37	chr1	156845387	156845387	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgggtggcagctccctgtCccccaccgagggcaaaggct	13	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156845387	A	A	156845387	3	1	11	1	0	0	0	0	1	0	0	0	10801	855	30	3	1606	3	NTRK1	1	156845387	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	227527	156845387	92405234	132	28299											
NTRK1	4914	broad.mit.edu	37	chr1	156849069	156849069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccgggacctggccacacGcaactgtctagtgggccagg	14	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156849069	A	A	156849069	3	1	11	1	0	0	0	0	1	0	0	0	10801	1087	38	4	2149	4	NTRK1	1	156849069	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3682	156849069	92401552	133	28300											
NTRK1	4914	broad.mit.edu	37	chr1	156849732	156849732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggggctggggtaggctGtgccttgacgggctgtccca	18	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156849732	T	T	156849732	1	4	11	0	1	0	0	0	0	0	0	0	10801	1392	48	3		3	NTRK1	1	156849732	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	663	156849732	92400889	134	28301											
PEAR1	375033	broad.mit.edu	37	chr1	156874558	156874558	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttcactaccaccaccaaGgagtcccactcccgcccctt	5	20	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156874558	A	A	156874558	2	1	11	1	0	0	0	0	0	0	0	1	11806	991	35	4		4	PEAR1	1	156874558	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	24826	156874558	92376063	135	28302											
ARHGEF11	9826	broad.mit.edu	37	chr1	156928511	156928511	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttaggatgttcagtggggTgggaggaagctgaaagactc	17	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156928511	A	A	156928511	1	1	11	0	1	0	0	0	0	0	0	0	898	1711	59	5		5	ARHGEF11	1	156928511	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	53953	156928511	92322110	136	28303											
FCRL5	83416	broad.mit.edu	37	chr1	157489488	157489488	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaattccatttttccacccTgtggacatttcactaatcac	3	13	3	0	rs3811032	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157489488	A	A	157489488	1	1	11	0	1	0	0	0	0	0	0	0	5855	1595	55	5		5	FCRL5	1	157489488	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	560977	157489488	91761133	137	28304											
FCRL5	83416	broad.mit.edu	37	chr1	157504517	157504517	+	Frame_Shift_Del	DEL	C	-	-													agaagctgaaggacactcttCccacagagggtgttgagctg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	157504517	-	-	157504517	7	5	11	1	0	1	0	1	0	0	0	0	5855	855	30	0	1405	0	FCRL5	1	157504517	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	15029	157504517	91746104	138	28305											
FCRL2	79368	broad.mit.edu	37	chr1	157718463	157718463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccagggttcacacttcAtacacagcttcccaggccct	8	16	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157718463	G	G	157718463	1	3	11	0	1	0	0	0	0	0	0	0	5852	232	8	5		5	FCRL2	1	157718463	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	213946	157718463	91532158	139	28306											
CD5L	922	broad.mit.edu	37	chr1	157806002	157806002	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctcagagggtccttagGcatgtactcagtcaatctgg	13	9	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157806002	A	A	157806002	1	1	11	0	1	0	0	0	0	0	0	0	3057	1218	42	4		4	CD5L	1	157806002	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	87539	157806002	91444619	140	28307											
CD1D	912	broad.mit.edu	37	chr1	158147036	158147036	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctctcaggaactgtatctGaaacagcttgaggtgctttc	9	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158147036	A	A	158147036	1	1	11	0	1	0	0	0	0	0	0	0	3007	1305	45	4		4	CD1D	1	158147036	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08	341034	158147036	91103585	141	28308											
CD1A	909	broad.mit.edu	37	chr1	158227158	158227158	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgaaatagggagtggaTgaggtaaaatgggatggatt	17	1	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158227158	A	A	158227158	1	1	11	0	1	0	0	0	0	0	0	0	3004	1479	51	5		5	CD1A	1	158227158	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	80122	158227158	91023463	142	28309											
CD1E	913	broad.mit.edu	37	chr1	158325960	158325960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcttttgagtgtgggGctgaggaaatgggtaggaat	19	3	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158325960	T	T	158325960	1	4	11	0	1	0	0	0	0	0	0	0	3008	1218	42	3		3	CD1E	1	158325960	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	98802	158325960	90924661	143	28310											
OR10X1	128367	broad.mit.edu	37	chr1	158548798	158548798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaatatgatggggctgaGgaagggggtaatgacagtat	17	3	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158548798	T	T	158548798	3	4	11	1	0	0	0	0	1	0	0	0	11016	1000	35	2	83	2	OR10X1	1	158548798	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	222838	158548798	90701823	144	28311											
SPTA1	6708	broad.mit.edu	37	chr1	158639388	158639388	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaaacttactgtcagcacAaccaaatatggacatgtgag	8	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158639388	T	T	158639388	1	4	11	0	1	0	0	0	0	0	0	0	15234	145	5	5		5	SPTA1	1	158639388	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	90590	158639388	90611233	145	28312											
SPTA1	6708	broad.mit.edu	37	chr1	158644338	158644338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttctctaccttatgctGctgatgcctgtccagcagaa	7	12	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158644338	T	T	158644338	3	4	11	1	0	0	0	0	1	0	0	0	15234	1328	46	3	6195	3	SPTA1	1	158644338	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4950	158644338	90606283	146	28313											
OR6K6	128371	broad.mit.edu	37	chr1	158725187	158725187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcatggatttccaccttGcctttctgtggctccaacca	7	13	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158725187	T	T	158725187	3	4	11	1	0	0	0	0	1	0	0	0	11298	1310	46	3	584	3	OR6K6	1	158725187	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	80849	158725187	90525434	147	28314											
FCER1A	2205	broad.mit.edu	37	chr1	159272177	159272177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctgccatggaatcccCtactctactgtgtgtagcct	9	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159272177	A	A	159272177	3	1	11	1	0	0	0	0	1	0	0	0	5831	681	24	2	25	2	FCER1A	1	159272177	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	546990	159272177	89978444	148	28315											
FCRL6	343413	broad.mit.edu	37	chr1	159778733	159778733	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggactcccctcctgagtcctGggcctgcatctccccagagc	10	18	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159778733	C	C	159778733	1	2	11	0	1	0	0	0	0	0	0	0	5856	1363	47	4		4	FCRL6	1	159778733	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	506556	159778733	89471888	149	28316											
IGSF8	93185	broad.mit.edu	37	chr1	160061886	160061886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcagcatgcaagtcagCatcaaccacagaggaccccg	8	17	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160061886	A	A	160061886	1	1	11	0	1	0	0	0	0	0	0	0	7674	725	25	3		3	IGSF8	1	160061886	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	283153	160061886	89188735	150	28317											
ATP1A4	480	broad.mit.edu	37	chr1	160151363	160151363	+	Intron	DEL	G	-	-													ctcaaaaaaaaaaaaaaaaaGaatgaggacctgactcagcc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160151363	-	-	160151363	6	5	11	0	1	1	0	1	0	0	0	0	1135	957	33	0		0	ATP1A4	1	160151363	Intron	DEL	G	TCGA-05-4398-01A-01D-1265-08	89477	160151363	89099258	151	28318											
SLAMF6	114836	broad.mit.edu	37	chr1	160458757	160458757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataactttgcagcccctgtcGctgtggctgtcttctcctcc	8	15	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160458757	T	T	160458757	1	4	11	0	1	0	0	0	0	0	0	0	14481	1102	38	3		3	SLAMF6	1	160458757	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	307394	160458757	88791864	152	28319											
CD84	8832	broad.mit.edu	37	chr1	160535278	160535279	+	Nonsense_Mutation	DNP	CC	AA	AA													tttgtagtctcctgcgtcttCcatcctcagatcgctaatga							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	160535279	AA	AA	160535278	4	1	11	1	0	0	0	0	0	1	0	0	3072	864	30	3	761	3	CD84	1	160535278	Nonsense_Mutation	DNP	CC	TCGA-05-4398-01A-01D-1265-08	76521	160535278	88715343	153	28320											
ATF6	22926	broad.mit.edu	37	chr1	161751777	161751777	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatttgggacatcaacaacCaaatctgtacaggtaattat	6	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161751777	T	T	161751777	4	4	11	1	0	0	0	0	0	1	0	0	1088	595	21	4	245	4	ATF6	1	161751777	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1216499	161751777	87498844	154	28321											
OLFML2B	25903	broad.mit.edu	37	chr1	161953963	161953963	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcttcaggtcgtacttgatGatgttgcgggtgaaggcgcg	16	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161953963	T	T	161953963	2	4	11	1	0	0	0	0	0	0	0	1	10953	1280	45	3		3	OLFML2B	1	161953963	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	202186	161953963	87296658	155	28322											
UAP1	6675	broad.mit.edu	37	chr1	162535877	162535877	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaacattaatgacctcAaactcacgttgtccaaagct	5	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162535877	G	G	162535877	3	3	11	1	0	0	0	0	1	0	0	0	16951	131	5	5	21	5	UAP1	1	162535877	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	581914	162535877	86714744	156	28323											
DUSP27	92235	broad.mit.edu	37	chr1	167096014	167096014	+	Frame_Shift_Del	DEL	T	-	-													tgccctggaaagatggaagaTcaagagaatccaatttggat							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167096014	-	-	167096014	7	5	11	1	0	1	0	1	0	0	0	0	4864	1435	50	0	1664	0	DUSP27	1	167096014	Frame_Shift_Del	DEL	T	TCGA-05-4398-01A-01D-1265-08	4560137	167096014	82154607	157	28324											
CD247	919	broad.mit.edu	37	chr1	167402220	167402220	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgatcttgccccttgtcaGgtggtgccccttccactgaa	9	14	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167402220	A	A	167402220	1	1	11	0	1	0	0	0	0	0	0	0	3018	1015	35	4		4	CD247	1	167402220	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	306206	167402220	81848401	158	28325											
ADCY10	55811	broad.mit.edu	37	chr1	167844442	167844442	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctgaagagaagaacaaaAgaacagatgctagattcaaa	9	5	1	6			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167844442	G	G	167844442	1	3	11	0	1	0	0	0	0	0	0	0	293	87	3	5		5	ADCY10	1	167844442	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	442222	167844442	81406179	159	28326											
F5	2153	broad.mit.edu	37	chr1	169487546	169487546	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattttaatctgcagaaacaGattaaaatactcctgcttcc	5	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169487546	T	T	169487546	1	4	11	0	1	0	0	0	0	0	0	0	5391	957	33	3		3	F5	1	169487546	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1643104	169487546	79763075	160	28327											
SELP	6403	broad.mit.edu	37	chr1	169562818	169562818	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttatgtaaccaagatgcAaagagaagactctttcctat	7	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169562818	G	G	169562818	1	3	11	0	1	0	0	0	0	0	0	0	14132	145	5	5		5	SELP	1	169562818	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	75272	169562818	79687803	161	28328											
C1orf129	80133	broad.mit.edu	37	chr1	170964579	170964579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttggttcctacaggaaagCggtggcccagtatttccccc	10	13	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170964579	T	T	170964579	3	4	11	1	0	0	0	0	1	0	0	0	2016	768	27	4	1290	4	C1orf129	1	170964579	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1401761	170964579	78286042	162	28329											
PRDX6	9588	broad.mit.edu	37	chr1	173457095	173457095	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaacacatcctggtgtcatCacagccaaggtttttaggtt	8	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173457095	G	G	173457095	1	3	11	0	1	0	0	0	0	0	0	0	12575	841	29	4		4	PRDX6	1	173457095	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	2492516	173457095	75793526	163	28330											
RABGAP1L	9910	broad.mit.edu	37	chr1	174726138	174726138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggacaacataggccttGtcaaagcacccttcctccag	7	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174726138	T	T	174726138	1	4	11	0	1	0	0	0	0	0	0	0	13073	1392	48	3		3	RABGAP1L	1	174726138	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1269043	174726138	74524483	164	28331											
TNR	7143	broad.mit.edu	37	chr1	175355449	175355449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcaatgactgagtgagaaGgatcaaacagaacaaaaagt	10	6	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175355449	T	T	175355449	1	4	11	0	1	0	0	0	0	0	0	0	16461	1015	35	2		2	TNR	1	175355449	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	629311	175355449	73895172	165	28332											
PAPPA2	60676	broad.mit.edu	37	chr1	176679089	176679089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacatttatgaaaacactTtttctgtgtcacacaatatt	4	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176679089	A	A	176679089	1	1	11	0	1	0	0	0	0	0	0	0	11527	1856	64	5		5	PAPPA2	1	176679089	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1323640	176679089	72571532	166	28333											
PAPPA2	60676	broad.mit.edu	37	chr1	176739120	176739120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggatgcactggctcagGttctaatgaatgaaggaatc	12	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176739120	T	T	176739120	1	4	11	0	1	0	0	0	0	0	0	0	11527	1276	44	3		3	PAPPA2	1	176739120	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	60031	176739120	72511501	167	28334											
SEC16B	89866	broad.mit.edu	37	chr1	177902465	177902465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggaaggggaagaggaCattttatgacctgcaggttg	15	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177902465	A	A	177902465	1	1	11	0	1	0	0	0	0	0	0	0	14100	493	17	3		3	SEC16B	1	177902465	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1163345	177902465	71348156	168	28335											
C1orf125	126859	broad.mit.edu	37	chr1	179339085	179339085	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatcgccctctgctggataTtcatgtgtatttgctttttc	8	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179339085	G	G	179339085	1	3	11	0	1	0	0	0	0	0	0	0	2013	1508	52	5		5	C1orf125	1	179339085	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1436620	179339085	69911536	169	28336											
CACNA1E	777	broad.mit.edu	37	chr1	181452842	181452842	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtgcgggtgttcggccgcGatcacctttgtgtgtcttct	14	10	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181452842	A	A	181452842	1	1	11	0	1	0	0	0	0	0	0	0	2568	1073	37	4		4	CACNA1E	1	181452842	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	2113757	181452842	67797779	170	28337											
ZNF648	127665	broad.mit.edu	37	chr1	182027224	182027224	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatacctgcaaaaagaaaagTacgaagagaaaatcacaaag	8	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182027224	G	G	182027224	1	3	11	0	1	0	0	0	0	0	0	0	18190	1653	57	5		5	ZNF648	1	182027224	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	574382	182027224	67223397	171	28338											
LAMC2	3918	broad.mit.edu	37	chr1	183190027	183190027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacccagtgtttctgctatGggcattcagccagctgccgc	11	13	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183190027	A	A	183190027	3	1	11	1	0	0	0	0	1	0	0	0	8687	1348	47	4	589	4	LAMC2	1	183190027	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1162803	183190027	66060594	172	28339											
HMCN1	83872	broad.mit.edu	37	chr1	186077855	186077855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaattattcaacattgcaGcagtaagcacagggttttta	7	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186077855	T	T	186077855	1	4	11	0	1	0	0	0	0	0	0	0	7287	986	34	3		3	HMCN1	1	186077855	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2887828	186077855	63172766	173	28340											
PLA2G4A	5321	broad.mit.edu	37	chr1	186862044	186862044	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttaaatacatcactacAgattcattgagaataaactg	4	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186862044	T	T	186862044	1	4	11	0	1	0	0	0	0	0	0	0	12096	203	7	5		5	PLA2G4A	1	186862044	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	784189	186862044	62388577	174	28341											
PLA2G4A	5321	broad.mit.edu	37	chr1	186946793	186946794	+	Frame_Shift_Ins	INS	-	T	T													caaagattgatccttatgtgINStttgatcgggaagggctgaa							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186946794	T	T	186946793	7	5	11	1	0	1	1	0	0	0	0	0	12096	1364	48	0	1891	0	PLA2G4A	1	186946793	Frame_Shift_Ins	INS	-	TCGA-05-4398-01A-01D-1265-08	84749	186946793	62303828	175	28342											
FAM5C	339479	broad.mit.edu	37	chr1	190203637	190203637	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacatcaactttattatcTaaatcagactttacaatgtc	2	8	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190203637	C	C	190203637	1	2	11	0	1	0	0	0	0	0	0	0	5645	1537	53	5		5	FAM5C	1	190203637	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	3256844	190203637	59046984	176	28343											
KCNT2	343450	broad.mit.edu	37	chr1	196398984	196398984	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagcacatttcataaagCcatttaatagtccctcttat	3	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196398984	G	G	196398984	1	3	11	0	1	0	0	0	0	0	0	0	8162	754	26	4		4	KCNT2	1	196398984	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6195347	196398984	52851637	177	28344											
NR5A2	2494	broad.mit.edu	37	chr1	200017512	200017512	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccaaaggcctacctctgAaccatgctgccttgcctcct	6	18	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200017512	T	T	200017512	3	4	11	1	0	0	0	0	1	0	0	0	10731	246	9	5	694	5	NR5A2	1	200017512	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	3618528	200017512	49233109	178	28345											
LAD1	3898	broad.mit.edu	37	chr1	201352158	201352158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgggttttggagacgtcAgggctaatcaccctaaggac	12	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201352158	G	G	201352158	1	3	11	0	1	0	0	0	0	0	0	0	8671	203	7	5		5	LAD1	1	201352158	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1334646	201352158	47898463	179	28346											
ATP2B4	493	broad.mit.edu	37	chr1	203671373	203671373	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatttttggggtggtctcAaggtcctgatcccaatctaa	11	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203671373	T	T	203671373	1	4	11	0	1	0	0	0	0	0	0	0	1146	145	5	5		5	ATP2B4	1	203671373	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2319215	203671373	45579248	180	28347											
ATP2B4	493	broad.mit.edu	37	chr1	203693068	203693068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagcctcagcctgtctcaGtggctgtggtgtctcttcat	10	12	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203693068	T	T	203693068	3	4	11	1	0	0	0	0	1	0	0	0	1146	1020	36	3	3154	3	ATP2B4	1	203693068	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	21695	203693068	45557553	181	28348											
PIK3C2B	5287	broad.mit.edu	37	chr1	204435933	204435933	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggccctggtggcatcaccCgatgctggctgggggagtct	16	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204435933	T	T	204435933	1	4	11	0	1	0	0	0	0	0	0	0	12005	667	23	4		4	PIK3C2B	1	204435933	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	742865	204435933	44814688	182	28349											
LRRN2	10446	broad.mit.edu	37	chr1	204586854	204586854	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccccatctgtcttggccCagctgccaggcctcaagcac	9	17	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204586854	T	T	204586854	1	4	11	0	1	0	0	0	0	0	0	0	9122	609	21	4		4	LRRN2	1	204586854	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	150921	204586854	44663767	183	28350											
CNTN2	6900	broad.mit.edu	37	chr1	205027166	205027166	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttgctggcatgccgcgCccgggccagccctccagcca	14	17	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205027166	T	T	205027166	3	4	11	1	0	0	0	0	1	0	0	0	3673	739	26	4	194	4	CNTN2	1	205027166	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	440312	205027166	44223455	184	28351											
KLHDC8A	55220	broad.mit.edu	37	chr1	205312293	205312293	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatgcctgttggtttccaTctgtttccctcctggccccc	7	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205312293	C	C	205312293	1	2	11	0	1	0	0	0	0	0	0	0	8433	1450	50	5		5	KLHDC8A	1	205312293	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	285127	205312293	43938328	185	28352											
IL24	11009	broad.mit.edu	37	chr1	207074989	207074989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatcgtgtcacaactgCaacccagtgtgagtagcaca	8	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207074989	A	A	207074989	3	1	11	1	0	0	0	0	1	0	0	0	7747	711	25	3	471	3	IL24	1	207074989	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1762696	207074989	42175632	186	28353											
CR1	1378	broad.mit.edu	37	chr1	207782630	207782630	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaccatactcttccttctCtcagtcatatcttgtgagcc	4	13	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207782630	G	G	207782630	1	3	11	0	1	0	0	0	0	0	0	0	3872	928	32	4		4	CR1	1	207782630	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	707641	207782630	41467991	187	28354											
CR1L	1379	broad.mit.edu	37	chr1	207871002	207871002	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaccccagggagactggagCcctgcagcccccagatgtga	12	15	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207871002	G	G	207871002	3	3	11	1	0	0	0	0	1	0	0	0	3873	738	26	4	1039	4	CR1L	1	207871002	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	88372	207871002	41379619	188	28355											
CAMK1G	57172	broad.mit.edu	37	chr1	209776697	209776697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggaggcctacaggagGttggtcgctggtgagggatg	20	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209776697	T	T	209776697	1	4	11	0	1	0	0	0	0	0	0	0	2624	1276	44	3		3	CAMK1G	1	209776697	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1905695	209776697	39473924	189	28356											
KCNK2	3776	broad.mit.edu	37	chr1	215259917	215259917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgttcaaagcattggagCagcctcatgagatttcacag	10	10	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215259917	A	A	215259917	3	1	11	1	0	0	0	0	1	0	0	0	8136	711	25	3	302	3	KCNK2	1	215259917	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5483220	215259917	33990704	190	28357											
USH2A	7399	broad.mit.edu	37	chr1	215960159	215960159	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagttgaagtcacacctgcCacaatgttctgtggcttcca	8	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215960159	T	T	215960159	3	4	11	1	0	0	0	0	1	0	0	0	17162	594	21	4	5452	4	USH2A	1	215960159	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	700242	215960159	33290462	191	28358											
USH2A	7399	broad.mit.edu	37	chr1	216373152	216373152	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtacttggcaaatggaaccaGattccagatggtagctgagg	13	7	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216373152	A	A	216373152	2	1	11	1	0	0	0	0	0	0	0	1	17162	933	33	4		4	USH2A	1	216373152	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	412993	216373152	32877469	192	28359											
SPATA17	128153	broad.mit.edu	37	chr1	217822358	217822358	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagatatatcataaaaatAtattccttagaaaatgtaat	3	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217822358	G	G	217822358	1	3	11	0	1	0	0	0	0	0	0	0	15118	464	16	5		5	SPATA17	1	217822358	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1449206	217822358	31428263	193	28360											
MARK1	4139	broad.mit.edu	37	chr1	220777327	220777327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaagtttctttataaaCaaggaaaaaacttgacattg	6	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220777327	A	A	220777327	1	1	11	0	1	0	0	0	0	0	0	0	9404	493	17	3		3	MARK1	1	220777327	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2954969	220777327	28473294	194	28361											
TMEM63A	9725	broad.mit.edu	37	chr1	226054364	226054364	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacagcaaagatggtgtgCagccaaaggaggtcattgct	13	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226054364	A	A	226054364	2	1	11	1	0	0	0	0	0	0	0	1	16313	697	25	3		3	TMEM63A	1	226054364	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	5277037	226054364	23196257	195	28362											
PARP1	142	broad.mit.edu	37	chr1	226576435	226576435	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccacttcatccactccatcCacctcatcgccttttctctt	2	19	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226576435	T	T	226576435	2	4	11	1	0	0	0	0	0	0	0	1	11548	581	21	4		4	PARP1	1	226576435	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	522071	226576435	22674186	196	28363											
WNT9A	7483	broad.mit.edu	37	chr1	228109340	228109340	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgtgtgttatggccgCggccacagcagatgctctcg	14	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228109340	G	G	228109340	3	3	11	1	0	0	0	0	1	0	0	0	17525	768	27	4	124	4	WNT9A	1	228109340	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1532905	228109340	21141281	197	28364											
WNT3A	89780	broad.mit.edu	37	chr1	228210557	228210557	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccgcggccgccggtggaaCtgcaccaccgtccacgacag	12	17	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228210557	G	G	228210557	3	3	11	1	0	0	0	0	1	0	0	0	17516	564	20	4	267	4	WNT3A	1	228210557	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	101217	228210557	21040064	198	28365											
OBSCN	84033	broad.mit.edu	37	chr1	228469926	228469926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggcagggcctgccggaCgggggcttatcacctgggct	18	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228469926	A	A	228469926	1	1	11	0	1	0	0	0	0	0	0	0	10907	551	19	3		3	OBSCN	1	228469926	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	259369	228469926	20780695	199	28366											
OBSCN	84033	broad.mit.edu	37	chr1	228486332	228486332	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggacgaggtgtgagctgcAgatccatgacctgtctgtgg	16	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228486332	G	G	228486332	1	3	11	0	1	0	0	0	0	0	0	0	10907	203	7	5		5	OBSCN	1	228486332	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	16406	228486332	20764289	200	28367											
NUP133	55746	broad.mit.edu	37	chr1	229596337	229596337	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataaattgcacacatctgctCcatagaaaaatccttcttac	3	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	229596337	G	G	229596337	1	3	11	0	1	0	0	0	0	0	0	0	10849	870	30	4		4	NUP133	1	229596337	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1110005	229596337	19654284	201	28368											
LYST	1130	broad.mit.edu	37	chr1	235901345	235901345	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcacagtcttctaaaggaaGaacagatcctccagaataag	7	9	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235901345	C	C	235901345	1	2	11	0	1	0	0	0	0	0	0	0	9216	957	33	4		4	LYST	1	235901345	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	6305008	235901345	13349276	202	28369											
LYST	1130	broad.mit.edu	37	chr1	235901984	235901984	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagataaggaacagtggaaaGaggttcacaagcaggtggtt	14	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235901984	C	C	235901984	1	2	11	0	1	0	0	0	0	0	0	0	9216	957	33	4		4	LYST	1	235901984	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	639	235901984	13348637	203	28370											
LYST	1130	broad.mit.edu	37	chr1	235938430	235938430	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagttttctcccaatttgctGagagtaaaaatttaacatgt	6	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235938430	C	C	235938430	1	2	11	0	1	0	0	0	0	0	0	0	9216	1305	45	4		4	LYST	1	235938430	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	36446	235938430	13312191	204	28371											
ACTN2	88	broad.mit.edu	37	chr1	236881170	236881170	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcagaccttcactgccTggtgtaactcccacctaagg	8	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236881170	A	A	236881170	3	1	11	1	0	0	0	0	1	0	0	0	205	1580	55	5	145	5	ACTN2	1	236881170	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	942740	236881170	12369451	205	28372											
ACTN2	88	broad.mit.edu	37	chr1	236890981	236890981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcgacggctgtgaagctgGaaagatggccttggactctg	14	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236890981	T	T	236890981	3	4	11	1	0	0	0	0	1	0	0	0	205	1183	41	3	562	3	ACTN2	1	236890981	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	9811	236890981	12359640	206	28373											
ACTN2	88	broad.mit.edu	37	chr1	236898989	236898989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatgacgtacgtctcttGcttctaccacgcttttgcgg	8	13	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236898989	T	T	236898989	3	4	11	1	0	0	0	0	1	0	0	0	205	1319	46	3	782	3	ACTN2	1	236898989	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	8008	236898989	12351632	207	28374											
RYR2	6262	broad.mit.edu	37	chr1	237604834	237604834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtaattttttatgaataCacaagcacaagtcaaaaata	5	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237604834	A	A	237604834	1	1	11	0	1	0	0	0	0	0	0	0	13880	493	17	3		3	RYR2	1	237604834	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	705845	237604834	11645787	208	28375											
RYR2	6262	broad.mit.edu	37	chr1	237663946	237663946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaaatcttttgactttgGctctgaagctgattctctga	7	8	4	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237663946	T	T	237663946	1	4	11	0	1	0	0	0	0	0	0	0	13880	1218	42	3		3	RYR2	1	237663946	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	59112	237663946	11586675	209	28376											
RYR2	6262	broad.mit.edu	37	chr1	237791358	237791358	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgggcaaagaagaagagAagctcatgattcgtggatta	13	4	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237791358	T	T	237791358	4	4	11	1	0	0	0	0	0	1	0	0	13880	247	9	5	6580	5	RYR2	1	237791358	Nonsense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	127412	237791358	11459263	210	28377											
RYR2	6262	broad.mit.edu	37	chr1	237893570	237893570	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacctttcaggcatcgggctGtcaatctctttcttcaggga	9	11	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237893570	C	C	237893570	3	2	11	1	0	0	0	0	1	0	0	0	13880	1377	48	4	11155	4	RYR2	1	237893570	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	102212	237893570	11357051	211	28378											
RYR2	6262	broad.mit.edu	37	chr1	237947412	237947412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatttccagccctttctgGgccgcatcgaaatcatggga	9	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947412	T	T	237947412	3	4	11	1	0	0	0	0	1	0	0	0	13880	1232	43	2	12758	2	RYR2	1	237947412	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	53842	237947412	11303209	212	28379											
RYR2	6262	broad.mit.edu	37	chr1	237947550	237947550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgacgtggtcaacgaaGgcggagagaaagagaagatg	15	4	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947550	T	T	237947550	3	4	11	1	0	0	0	0	1	0	0	0	13880	1000	35	2	12896	2	RYR2	1	237947550	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	138	237947550	11303071	213	28380											
ZP4	57829	broad.mit.edu	37	chr1	238050952	238050952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttagttacttttaatcCcactgagaagctggtgacaa	7	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050952	A	A	238050952	1	1	11	0	1	0	0	0	0	0	0	0	18347	638	22	2		2	ZP4	1	238050952	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	103402	238050952	11199669	214	28381											
RGS7	6000	broad.mit.edu	37	chr1	240986600	240986600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccaaccataataaatgCcaatggatacatcaactgga	7	10	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240986600	A	A	240986600	1	1	11	0	1	0	0	0	0	0	0	0	13419	754	26	3		3	RGS7	1	240986600	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2935648	240986600	8264021	215	28382											
WDR64	128025	broad.mit.edu	37	chr1	241907652	241907652	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctgatgagaattgaagggCttcttcaaacggattacttg	10	6	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241907652	G	G	241907652	1	3	11	0	1	0	0	0	0	0	0	0	17442	812	28	4		4	WDR64	1	241907652	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	921052	241907652	7342969	216	28383											
SMYD3	64754	broad.mit.edu	37	chr1	246493915	246493915	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaataagtttgagtacctTtgtatatttaaatgaaagtc	6	4	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246493915	A	A	246493915	1	1	11	0	1	0	0	0	0	0	0	0	14937	1856	64	5		5	SMYD3	1	246493915	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	4586263	246493915	2756706	217	28384											
NLRP3	114548	broad.mit.edu	37	chr1	247587214	247587214	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattgaagacaggaatgccCgtctgggtgagagtgtgagc	16	7	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247587214	T	T	247587214	3	4	11	1	0	0	0	0	1	0	0	0	10573	652	23	4	479	4	NLRP3	1	247587214	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1093299	247587214	1663407	218	28385											
OR2L13	284521	broad.mit.edu	37	chr1	248097596	248097596	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggctctagggcaattgatCacttcttctgtgaagtccct	10	10	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248097596	A	A	248097596	1	1	11	0	1	0	0	0	0	0	0	0	11100	841	29	3		3	OR2L13	1	248097596	5'Flank	SNP	C	TCGA-05-4398-01A-01D-1265-08	510382	248097596	1153025	219	28386											
PGBD2	267002	broad.mit.edu	37	chr1	249211025	249211025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatgcttcagtcctgtGtgaggactctggcaccgggg	15	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	249211025	T	T	249211025	3	4	11	1	0	0	0	0	1	0	0	0	11876	1377	48	3	248	3	PGBD2	1	249211025	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1113429	249211025	39596	220	28387											
TSSC1	7260	broad.mit.edu	37	chr2	3341899	3341899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttataatgttgttttcatCgtcaaaatctatgatatgga	6	4	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3341899	A	A	3341899	3	1	11	1	0	0	0	0	1	0	0	0	16791	884	31	3	1043	3	TSSC1	2	3341899	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08		3341899	239857474	221	28388											
COLEC11	78989	broad.mit.edu	37	chr2	3665302	3665302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagcggagcgaggcgtGcgagaacgagagaagtctgg	19	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3665302	T	T	3665302	1	4	11	0	1	0	0	0	0	0	0	0	3743	1334	46	3		3	COLEC11	2	3665302	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	323403	3665302	239534071	222	28389											
KIDINS220	57498	broad.mit.edu	37	chr2	8930077	8930077	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaagatttgggtggaccgtGaaggcaaacaataaaccaag	11	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8930077	A	A	8930077	2	1	11	1	0	0	0	0	0	0	0	1	8341	1281	45	4		4	KIDINS220	2	8930077	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	5264775	8930077	234269296	223	28390											
GREB1	9687	broad.mit.edu	37	chr2	11765194	11765194	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtcgcatttctcagaaCgtattctgtgttgtttagcg	10	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11765194	T	T	11765194	1	4	11	0	1	0	0	0	0	0	0	0	6826	551	19	4		4	GREB1	2	11765194	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2835117	11765194	231434179	224	28391											
FAM49A	81553	broad.mit.edu	37	chr2	16734382	16734382	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttatttctttagacaaaaAtccacacttcaatgctcaca	3	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16734382	T	T	16734382	1	4	11	0	1	0	0	0	0	0	0	0	5626	116	4	5		5	FAM49A	2	16734382	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	4969188	16734382	226464991	225	28392											
OSR1	130497	broad.mit.edu	37	chr2	19553257	19553257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctggaacgctgcctccagCggtgatctcgggcttgggtt	15	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19553257	A	A	19553257	3	1	11	1	0	0	0	0	1	0	0	0	11387	768	27	3	498	3	OSR1	2	19553257	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2818875	19553257	223646116	226	28393											
SDC1	6382	broad.mit.edu	37	chr2	20402564	20402564	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtttggtgggcttctggTaggccccgccgttggcttgt	15	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20402564	A	A	20402564	3	1	11	1	0	0	0	0	1	0	0	0	14064	1638	57	5	40	5	SDC1	2	20402564	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	849307	20402564	222796809	227	28394											
ITSN2	50618	broad.mit.edu	37	chr2	24533500	24533500	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcgcagaagacaatgaTgttataggtgcagctggagg	15	5	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24533500	A	A	24533500	2	1	11	1	0	0	0	0	0	0	0	1	7997	1451	51	5		5	ITSN2	2	24533500	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	4130936	24533500	218665873	228	28395											
KIF3C	3797	broad.mit.edu	37	chr2	26174779	26174779	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctcgatgattaggtacctggGagcaggaatgaaggagtgat	15	5	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26174779	C	C	26174779	1	2	11	0	1	0	0	0	0	0	0	0	8372	1189	41	4		4	KIF3C	2	26174779	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1641279	26174779	217024594	229	28396											
HADHB	3032	broad.mit.edu	37	chr2	26502085	26502085	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctgcctttgctgtttctcGgctggaacaggatgaatatg	12	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26502085	C	C	26502085	3	2	11	1	0	0	0	0	1	0	0	0	7010	1116	39	4	743	4	HADHB	2	26502085	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	327306	26502085	216697288	230	28397											
OTOF	9381	broad.mit.edu	37	chr2	26687945	26687945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgggtgggactaagcCatcctggatgacagctggtc	17	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26687945	A	A	26687945	1	1	11	0	1	0	0	0	0	0	0	0	11397	609	21	2		2	OTOF	2	26687945	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	185860	26687945	216511428	231	28398											
DPYSL5	56896	broad.mit.edu	37	chr2	27148031	27148031	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcccactaccatcctagctCcccacaatgccaaaagaaaa	3	17	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27148031	A	A	27148031	1	1	11	0	1	0	0	0	0	0	0	0	4790	870	30	3		3	DPYSL5	2	27148031	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	460086	27148031	216051342	232	28399											
ALK	238	broad.mit.edu	37	chr2	29497970	29497970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgaacccttacctgtaGggtcaaagatgggggtctgt	14	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29497970	T	T	29497970	3	4	11	1	0	0	0	0	1	0	0	0	525	1000	35	2	2902	2	ALK	2	29497970	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2349939	29497970	213701403	233	28400											
EHD3	30845	broad.mit.edu	37	chr2	31472333	31472333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagcagaggatcagccgGggtaagcaacctgcctgagg	16	9	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31472333	T	T	31472333	2	4	11	1	0	0	0	0	0	0	0	1	5019	1246	43	2		2	EHD3	2	31472333	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1974363	31472333	211727040	234	28401											
XDH	7498	broad.mit.edu	37	chr2	31628596	31628596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatcctctcattcagtaGctgagaatttcagattacag	6	9	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31628596	T	T	31628596	1	4	11	0	1	0	0	0	0	0	0	0	17553	986	34	3		3	XDH	2	31628596	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	156263	31628596	211570777	235	28402											
BIRC6	57448	broad.mit.edu	37	chr2	32639837	32639837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattgttcctttttaaagGgcatacatcacagaaggaag	8	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32639837	T	T	32639837	3	4	11	1	0	0	0	0	1	0	0	0	1444	1246	43	2	1516	2	BIRC6	2	32639837	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1011241	32639837	210559536	236	28403											
VIT	5212	broad.mit.edu	37	chr2	36943632	36943632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagatccaaagaatctagcCaagaaaagttttaaaccaag	6	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36943632	A	A	36943632	1	1	11	0	1	0	0	0	0	0	0	0	17298	609	21	2		2	VIT	2	36943632	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4303795	36943632	206255741	237	28404											
EIF2AK2	5610	broad.mit.edu	37	chr2	37368691	37368691	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagaaaagccaaattatgtCttacccttctggcccatgca	6	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37368691	A	A	37368691	1	1	11	0	1	0	0	0	0	0	0	0	5037	928	32	3		3	EIF2AK2	2	37368691	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	425059	37368691	205830682	238	28405											
CEBPZ	10153	broad.mit.edu	37	chr2	37428995	37428995	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatgatactttttgcatctCtgttgtgtagccagtcatca	8	8	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37428995	G	G	37428995	3	3	11	1	0	0	0	0	1	0	0	0	3234	913	32	4	91	4	CEBPZ	2	37428995	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	60304	37428995	205770378	239	28406											
CEBPZ	10153	broad.mit.edu	37	chr2	37429980	37429980	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caatgttatcaaacttggatCccatattttcatccaataga	4	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37429980	G	G	37429980	3	3	11	1	0	0	0	0	1	0	0	0	3234	855	30	4	200	4	CEBPZ	2	37429980	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	985	37429980	205769393	240	28407											
C2orf56	55471	broad.mit.edu	37	chr2	37469944	37469944	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttacttgttgaggttatTtttaactattatttggaatt	6	2	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37469944	A	A	37469944	1	1	11	0	1	0	0	0	0	0	0	0	2199	1856	64	5		5	C2orf56	2	37469944	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	39964	37469944	205729429	241	28408											
THUMPD2	80745	broad.mit.edu	37	chr2	39993217	39993217	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacacaggaatccccacCacagagtaaatgtcatttag	7	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39993217	A	A	39993217	2	1	11	1	0	0	0	0	0	0	0	1	16006	581	21	2		2	THUMPD2	2	39993217	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2523273	39993217	203206156	242	28409											
SLC8A1	6546	broad.mit.edu	37	chr2	40405780	40405780	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgagttttttcttcaagAatgggtatcagataggtatg	11	4	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40405780	T	T	40405780	1	4	11	0	1	0	0	0	0	0	0	0	14820	261	9	5		5	SLC8A1	2	40405780	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	412563	40405780	202793593	243	28410											
SLC8A1	6546	broad.mit.edu	37	chr2	40655643	40655643	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cattctggaattcgagctctCcacaagtgtcctcaaaatcc	6	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40655643	G	G	40655643	3	3	11	1	0	0	0	0	1	0	0	0	14820	855	30	4	1291	4	SLC8A1	2	40655643	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	249863	40655643	202543730	244	28411											
SLC8A1	6546	broad.mit.edu	37	chr2	40657458	40657458	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacctactggtaaaaataaGatgggggagagggcagaaaa	13	5	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40657458	A	A	40657458	1	1	11	0	1	0	0	0	0	0	0	0	14820	957	33	4		4	SLC8A1	2	40657458	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08	1815	40657458	202541915	245	28412											
PLEKHH2	130271	broad.mit.edu	37	chr2	43926908	43926908	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaagaacaagctttgccAcagatggtggcatctcccag	9	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43926908	T	T	43926908	3	4	11	1	0	0	0	0	1	0	0	0	12172	159	6	5	837	5	PLEKHH2	2	43926908	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	3269450	43926908	199272465	246	28413											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44010770	44010770	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttagctctaaaagacatAaggaaggggaacgattttga	11	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44010770	T	T	44010770	1	4	11	0	1	0	0	0	0	0	0	0	4887	377	13	5		5	DYNC2LI1	2	44010770	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	83862	44010770	199188603	247	28414											
SRBD1	55133	broad.mit.edu	37	chr2	45801738	45801738	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacagcatgagtccataaagCagaaaactccataaaagaga	7	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45801738	G	G	45801738	1	3	11	0	1	0	0	0	0	0	0	0	15251	725	25	4		4	SRBD1	2	45801738	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1790968	45801738	197397635	248	28415											
EPAS1	2034	broad.mit.edu	37	chr2	46609494	46609494	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttataaaggaaagggatGctagggcttcctggcctctc	11	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46609494	T	T	46609494	1	4	11	0	1	0	0	0	0	0	0	0	5192	1334	46	3		3	EPAS1	2	46609494	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	807756	46609494	196589879	249	28416											
FSHR	2492	broad.mit.edu	37	chr2	49217632	49217632	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagactacacaatgcatattAaaggcccagatagccgttgg	9	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49217632	T	T	49217632	1	4	11	0	1	0	0	0	0	0	0	0	6133	377	13	5		5	FSHR	2	49217632	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2608138	49217632	193981741	250	28417											
NRXN1	9378	broad.mit.edu	37	chr2	50733708	50733708	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacacgcactgtgtgccactCgttatcattgaggttatagc	9	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50733708	G	G	50733708	3	3	11	1	0	0	0	0	1	0	0	0	10760	893	31	4	2408	4	NRXN1	2	50733708	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1516076	50733708	192465665	251	28418											
NRXN1	9378	broad.mit.edu	37	chr2	51254924	51254924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcttgagcgccgcggcgCgcagttccgggggcagcccc	17	15	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51254924	T	T	51254924	3	4	11	1	0	0	0	0	1	0	0	0	10760	768	27	4	4510	4	NRXN1	2	51254924	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	521216	51254924	191944449	252	28419											
SPTBN1	6711	broad.mit.edu	37	chr2	54852019	54852019	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcataagacaggagaaactgGaacagctcgcccgcagattt	10	10	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54852019	T	T	54852019	4	4	11	1	0	0	0	0	0	1	0	0	15237	1175	41	3	1412	3	SPTBN1	2	54852019	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3597095	54852019	188347354	253	28420											
SPTBN1	6711	broad.mit.edu	37	chr2	54852032	54852032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactggaacagctcgcccGcagatttgatcgcaaggcag	12	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54852032	T	T	54852032	3	4	11	1	0	0	0	0	1	0	0	0	15237	1087	38	3	1425	3	SPTBN1	2	54852032	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	13	54852032	188347341	254	28421											
MTIF2	4528	broad.mit.edu	37	chr2	55473345	55473345	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaataaaatactttttaAaacaaatgctttgaaaatat	2	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55473345	G	G	55473345	1	3	11	0	1	0	0	0	0	0	0	0	10028	29	1	5		5	MTIF2	2	55473345	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	621313	55473345	187726028	255	28422											
EHBP1	23301	broad.mit.edu	37	chr2	63206217	63206217	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcatcctatttataatgtGggccaagcaccatgctgtaa	9	9	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63206217	A	A	63206217	1	1	11	0	1	0	0	0	0	0	0	0	5015	1363	47	4		4	EHBP1	2	63206217	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	7732872	63206217	179993156	256	28423											
SERTAD2	9792	broad.mit.edu	37	chr2	64863326	64863326	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgtcgttatttcaaaattcCcaggcagagagtccatcagt	8	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64863326	G	G	64863326	3	3	11	1	0	0	0	0	1	0	0	0	14234	623	22	4	268	4	SERTAD2	2	64863326	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1657109	64863326	178336047	257	28424											
ANTXR1	84168	broad.mit.edu	37	chr2	69330136	69330136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggaagggaattcccaccCttgtcttccagcaaggccac	9	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69330136	A	A	69330136	1	1	11	0	1	0	0	0	0	0	0	0	711	696	24	2		2	ANTXR1	2	69330136	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4466810	69330136	173869237	258	28425											
AAK1	22848	broad.mit.edu	37	chr2	69709947	69709947	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccctcaattagtttttctAcgttgggcagagagacaaaa	9	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69709947	G	G	69709947	1	3	11	0	1	0	0	0	0	0	0	0	16	406	14	5		5	AAK1	2	69709947	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	379811	69709947	173489426	259	28426											
ANXA4	307	broad.mit.edu	37	chr2	70015301	70015301	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgctggaagtgaatcctCctgcgtgcattgcacatcac	9	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70015301	T	T	70015301	1	4	11	0	1	0	0	0	0	0	0	0	720	870	30	4		4	ANXA4	2	70015301	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	305354	70015301	173184072	260	28427											
CLEC4F	165530	broad.mit.edu	37	chr2	71043307	71043307	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgggtctgggaagttaaGgctgaagcattcttcattcc	11	8	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71043307	A	A	71043307	2	1	11	1	0	0	0	0	0	0	0	1	3548	987	35	4		4	CLEC4F	2	71043307	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1028006	71043307	172156066	261	28428											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71367020	71367020	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaattaaatttaacttaatCaaaatgtcaccaagattttt	3	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71367020	G	G	71367020	1	3	11	0	1	0	0	0	0	0	0	0	9819	841	29	4		4	MPHOSPH10	2	71367020	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	323713	71367020	171832353	262	28429											
DYSF	8291	broad.mit.edu	37	chr2	71838328	71838328	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcttgtctttttgccttGgtcttccttccacctttgtc	5	14	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71838328	C	C	71838328	1	2	11	0	1	0	0	0	0	0	0	0	4899	1363	47	4		4	DYSF	2	71838328	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	471308	71838328	171361045	263	28430											
CCT7	10574	broad.mit.edu	37	chr2	73478236	73478236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgggcgtttggggcttgGgatggaggaaggaatgaaga	20	3	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73478236	T	T	73478236	1	4	11	0	1	0	0	0	0	0	0	0	2989	1247	43	2		2	CCT7	2	73478236	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1639908	73478236	169721137	264	28431											
ALMS1	7840	broad.mit.edu	37	chr2	73786094	73786094	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagtgtgttaatttccctttCgtagattccagtgctgctgc	9	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73786094	T	T	73786094	1	4	11	0	1	0	0	0	0	0	0	0	535	899	31	4		4	ALMS1	2	73786094	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	307858	73786094	169413279	265	28432											
HK2	3099	broad.mit.edu	37	chr2	75113390	75113390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatattggggttcacctGtgaactgggcatctgcttct	12	8	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75113390	T	T	75113390	1	4	11	0	1	0	0	0	0	0	0	0	7258	1392	48	3		3	HK2	2	75113390	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1327296	75113390	168085983	266	28433											
HK2	3099	broad.mit.edu	37	chr2	75118049	75118049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtggcctgccgcatccGtgaggctggacagcgataga	15	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75118049	T	T	75118049	3	4	11	1	0	0	0	0	1	0	0	0	7258	1145	40	3	2805	3	HK2	2	75118049	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4659	75118049	168081324	267	28434											
REG3G	130120	broad.mit.edu	37	chr2	79255422	79255422	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggtgggaagtcagcaGcctgagcttggcgtgcagct	18	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79255422	T	T	79255422	1	4	11	0	1	0	0	0	0	0	0	0	13321	986	34	3		3	REG3G	2	79255422	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	4137373	79255422	163943951	268	28435											
REG3A	5068	broad.mit.edu	37	chr2	79384548	79384548	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgtcccaatccaggagAgagattcaaagaaagtggag	12	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79384548	T	T	79384548	1	4	11	0	1	0	0	0	0	0	0	0	13320	319	11	5		5	REG3A	2	79384548	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	129126	79384548	163814825	269	28436											
DNAH6	1768	broad.mit.edu	37	chr2	84800703	84800703	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttacaagctcttaaacttcAggaacctggtaacttgtcca	6	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84800703	T	T	84800703	3	4	11	1	0	0	0	0	1	0	0	0	4645	188	7	5	1958	5	DNAH6	2	84800703	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	5416155	84800703	158398670	270	28437											
RMND5A	64795	broad.mit.edu	37	chr2	87042852	87042852	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccttgaggccttgcaaaaaGaaaaacaagagagtctcaat	8	9	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87042852	C	C	87042852	1	2	11	0	1	0	0	0	0	0	0	0	13508	957	33	4		4	RMND5A	2	87042852	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2242149	87042852	156156521	271	28438											
COX5B	1329	broad.mit.edu	37	chr2	98263846	98263846	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccaaagggagcttcaggcAccagggaagaccctaattta	10	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98263846	T	T	98263846	3	4	11	1	0	0	0	0	1	0	0	0	3805	159	6	5	227	5	COX5B	2	98263846	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	11220994	98263846	144935527	272	28439											
TMEM131	23505	broad.mit.edu	37	chr2	98409464	98409464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctgaaaaagggaccaaCtgcagatcagtaaatagcaa	9	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98409464	A	A	98409464	1	1	11	0	1	0	0	0	0	0	0	0	16167	580	20	3		3	TMEM131	2	98409464	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	145618	98409464	144789909	273	28440											
TSGA10	80705	broad.mit.edu	37	chr2	99634668	99634668	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaaatagactcactcttcTaatgatcgatctaggcctcg	6	11	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99634668	C	C	99634668	2	2	11	1	0	0	0	0	0	0	0	1	16742	1519	53	5		5	TSGA10	2	99634668	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	1225204	99634668	143564705	274	28441											
EIF5B	9669	broad.mit.edu	37	chr2	99980853	99980853	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagccagagccagagcCgaagctactcttaaactgct	10	11	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99980853	A	A	99980853	2	1	11	1	0	0	0	0	0	0	0	1	5086	639	23	1		1	EIF5B	2	99980853	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	346185	99980853	143218520	275	28442											
REV1	51455	broad.mit.edu	37	chr2	100052327	100052327	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctatttcgtatacccacTgatacaaagaagcaatccat	6	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100052327	A	A	100052327	2	1	11	1	0	0	0	0	0	0	0	1	13347	1567	55	5		5	REV1	2	100052327	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	71474	100052327	143147046	276	28443											
AFF3	3899	broad.mit.edu	37	chr2	100623934	100623934	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgttagtctggagaaagaAaaacacatccacgctattgt	8	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100623934	G	G	100623934	1	3	11	0	1	0	0	0	0	0	0	0	358	29	1	5		5	AFF3	2	100623934	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	571607	100623934	142575439	277	28444											
IL18R1	8809	broad.mit.edu	37	chr2	102997948	102997948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttagttaatgcaaataGgactcaagtgaacgtaaacc	7	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102997948	T	T	102997948	1	4	11	0	1	0	0	0	0	0	0	0	7717	1015	35	2		2	IL18R1	2	102997948	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2374014	102997948	140201425	278	28445											
GPR45	11250	broad.mit.edu	37	chr2	105859086	105859086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcagcaacaggtcagcgtGgacttgagcttcaagaccaa	12	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105859086	T	T	105859086	2	4	11	1	0	0	0	0	0	0	0	1	6761	1335	47	2		2	GPR45	2	105859086	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2861138	105859086	137340287	279	28446											
GCC2	9648	broad.mit.edu	37	chr2	109087055	109087056	+	Frame_Shift_Del	DEL	AG	-	-													atactgtagaacagcataacAgagaagtacagagtcttaag							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109087056	-	-	109087055	7	5	11	1	0	1	0	1	0	0	0	0	6348	180	7	0	1292	0	GCC2	2	109087055	Frame_Shift_Del	DEL	AG	TCGA-05-4398-01A-01D-1265-08	3227969	109087055	134112318	280	28447											
MERTK	10461	broad.mit.edu	37	chr2	112779280	112779280	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactgagggttggcagcttGctcagatctcttttatatct	9	8	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112779280	A	A	112779280	1	1	11	0	1	0	0	0	0	0	0	0	9572	1334	46	4		4	MERTK	2	112779280	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3692225	112779280	130420093	281	28448											
IL1F9	56300	broad.mit.edu	37	chr2	113742535	113742535	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccttcccggactggttcaTtgcctcctccaagagagacc	10	15	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113742535	A	A	113742535	3	1	11	1	0	0	0	0	1	0	0	0	7727	1493	52	5	433	5	IL1F9	2	113742535	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	963255	113742535	129456838	282	28449											
IL1RN	3557	broad.mit.edu	37	chr2	113875636	113875636	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccactctcattttttcaccTgagaaatgagagaggaaaat	7	8	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113875636	G	G	113875636	1	3	11	0	1	0	0	0	0	0	0	0	7735	1595	55	5		5	IL1RN	2	113875636	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	133101	113875636	129323737	283	28450											
PAX8	7849	broad.mit.edu	37	chr2	113993208	113993208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggggtgtgagatggcggGgagggaacacgcacaagcca	19	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113993208	T	T	113993208	1	4	11	0	1	0	0	0	0	0	0	0	11579	1247	43	2		2	PAX8	2	113993208	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	117572	113993208	129206165	284	28451											
DPP10	57628	broad.mit.edu	37	chr2	116538601	116538601	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatgaattctgatataatAtattttattcattgtatttg	4	3	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116538601	G	G	116538601	1	3	11	0	1	0	0	0	0	0	0	0	4767	464	16	5		5	DPP10	2	116538601	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2545393	116538601	126660772	285	28452											
DDX18	8886	broad.mit.edu	37	chr2	118577319	118577319	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataatgtggagaagccagaTaatgatgaagatgagagtga	13	2	0	7			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118577319	C	C	118577319	2	2	11	1	0	0	0	0	0	0	0	1	4378	1403	49	5		5	DDX18	2	118577319	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	2038718	118577319	124622054	286	28453											
PTPN4	5775	broad.mit.edu	37	chr2	120723086	120723086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttagaaaaatgaaagtcGtccactcactcagatccagt	6	10	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120723086	A	A	120723086	3	1	11	1	0	0	0	0	1	0	0	0	12898	1145	40	4	2517	4	PTPN4	2	120723086	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2145767	120723086	122476287	287	28454											
GYPC	2995	broad.mit.edu	37	chr2	127453740	127453740	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaacagacttcacttccCtgaatgcctcccccatctcc	5	18	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127453740	A	A	127453740	1	1	11	0	1	0	0	0	0	0	0	0	6975	696	24	2		2	GYPC	2	127453740	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	6730654	127453740	115745633	288	28455											
MYO7B	4648	broad.mit.edu	37	chr2	128338352	128338352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaacctggacgcctcagaCgtgatggagacgcccgcctt	13	13	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128338352	A	A	128338352	3	1	11	1	0	0	0	0	1	0	0	0	10177	535	19	3	1069	3	MYO7B	2	128338352	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	884612	128338352	114861021	289	28456											
GPR17	2840	broad.mit.edu	37	chr2	128408648	128408648	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accggcttcctcttctacctCaacatgtacgccagcatcta	5	16	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128408648	T	T	128408648	2	4	11	1	0	0	0	0	0	0	0	1	6732	813	29	4		4	GPR17	2	128408648	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	70296	128408648	114790725	290	28457											
WDR33	55339	broad.mit.edu	37	chr2	128477639	128477639	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctggggcccctgtggtcCcatgaatccttgtggccccc	12	17	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128477639	G	G	128477639	3	3	11	1	0	0	0	0	1	0	0	0	17414	632	22	4	2078	4	WDR33	2	128477639	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	68991	128477639	114721734	291	28458											
POTEF	728378	broad.mit.edu	37	chr2	130869562	130869562	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacagattaaaagaaagaaCtataccttccatatctatcc	3	10	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130869562	G	G	130869562	1	3	11	0	1	0	0	0	0	0	0	0	12361	580	20	4		4	POTEF	2	130869562	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2391923	130869562	112329811	292	28459											
PLEKHB2	55041	broad.mit.edu	37	chr2	132093204	132093204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcacatcgatgaagttGtttattcgtgccctgtggag	12	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132093204	T	T	132093204	1	4	11	0	1	0	0	0	0	0	0	0	12160	1392	48	3		3	PLEKHB2	2	132093204	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1223642	132093204	111106169	293	28460											
LCT	3938	broad.mit.edu	37	chr2	136564990	136564990	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaacatcccaaagggagcaGaggagagcttgacaccagga	14	9	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136564990	T	T	136564990	1	4	11	0	1	0	0	0	0	0	0	0	8765	957	33	3		3	LCT	2	136564990	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4471786	136564990	106634383	294	28461											
THSD7B	80731	broad.mit.edu	37	chr2	137917723	137917723	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggcatgcaaataaaggcaGaagcaatgctaaggatgtcc	11	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137917723	T	T	137917723	1	4	11	0	1	0	0	0	0	0	0	0	16003	957	33	3		3	THSD7B	2	137917723	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1352733	137917723	105281650	295	28462											
THSD7B	80731	broad.mit.edu	37	chr2	138169484	138169484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagatgagaacactcacaCacagctcgggaggtttgtct	10	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138169484	T	T	138169484	1	4	11	0	1	0	0	0	0	0	0	0	16003	493	17	4		4	THSD7B	2	138169484	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	251761	138169484	105029889	296	28463											
LRP1B	53353	broad.mit.edu	37	chr2	141113955	141113955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgaaatccaggcttaCagcgacagaaaacagatgtt	8	9	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141113955	A	A	141113955	3	1	11	1	0	0	0	0	1	0	0	0	9042	478	17	3	2381	3	LRP1B	2	141113955	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2944471	141113955	102085418	297	28464											
LRP1B	53353	broad.mit.edu	37	chr2	141143691	141143691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttccttaattcagttaCtaagaagcatccttaggaaa	6	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141143691	A	A	141143691	1	1	11	0	1	0	0	0	0	0	0	0	9042	580	20	3		3	LRP1B	2	141143691	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	29736	141143691	102055682	298	28465											
LRP1B	53353	broad.mit.edu	37	chr2	141680576	141680576	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttgtggtcacacaatcGtatggtaccattgcaacctt	9	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141680576	T	T	141680576	2	4	11	1	0	0	0	0	0	0	0	1	9042	1153	40	3		3	LRP1B	2	141680576	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	536885	141680576	101518797	299	28466											
LRP1B	53353	broad.mit.edu	37	chr2	141762874	141762874	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcagaaagagcccgataaAcaaataagggtaacttgaaa	8	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141762874	G	G	141762874	1	3	11	0	1	0	0	0	0	0	0	0	9042	58	2	5		5	LRP1B	2	141762874	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	82298	141762874	101436499	300	28467											
LRP1B	53353	broad.mit.edu	37	chr2	141777508	141777508	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccattaactggatccacCacaattcctctgggatgaga	7	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141777508	A	A	141777508	2	1	11	1	0	0	0	0	0	0	0	1	9042	581	21	2		2	LRP1B	2	141777508	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	14634	141777508	101421865	301	28468											
ZEB2	9839	broad.mit.edu	37	chr2	145156310	145156311	+	Missense_Mutation	DNP	GG	TT	TT													ttggtaatgacaagtctaaaGgctcagcctggagctcctca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	145156311	TT	TT	145156310	3	4	11	1	0	0	0	0	1	0	0	0	17750	1000	35	2	1212	2	ZEB2	2	145156310	Missense_Mutation	DNP	GG	TCGA-05-4398-01A-01D-1265-08	3378802	145156310	98043063	302	28469											
ZEB2	9839	broad.mit.edu	37	chr2	145162626	145162627	+	Intron	DNP	GG	CT	CT													ggagaagaaatgttgtttccGggccttcttcctaggatccc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	145162627	CT	CT	145162626	1	2	11	0	1	0	0	0	0	0	0	0	17750	1131	39	4		4	ZEB2	2	145162626	Intron	DNP	GG	TCGA-05-4398-01A-01D-1265-08	6316	145162626	98036747	303	28470											
RIF1	55183	broad.mit.edu	37	chr2	152289847	152289847	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgctatttattagcagActagaacatataaaaggtct	6	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152289847	C	C	152289847	1	2	11	0	1	0	0	0	0	0	0	0	13468	290	10	5		5	RIF1	2	152289847	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	7127221	152289847	90909526	304	28471											
RIF1	55183	broad.mit.edu	37	chr2	152322272	152322272	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagcactgaagaaggaatcAttgacgctaataaaactgaa	9	6	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152322272	T	T	152322272	3	4	11	1	0	0	0	0	1	0	0	0	13468	217	8	5	6352	5	RIF1	2	152322272	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	32425	152322272	90877101	305	28472											
RIF1	55183	broad.mit.edu	37	chr2	152322735	152322735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaatattacaattatatGgccactcatttgattattta	3	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152322735	T	T	152322735	1	4	11	0	1	0	0	0	0	0	0	0	13468	1363	47	2		2	RIF1	2	152322735	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	463	152322735	90876638	306	28473											
NEB	4703	broad.mit.edu	37	chr2	152410462	152410462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcttctgggaatccttGgcagtaaccatctctaccat	6	12	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152410462	T	T	152410462	2	4	11	1	0	0	0	0	0	0	0	1	10397	1335	47	2		2	NEB	2	152410462	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	87727	152410462	90788911	307	28474											
NEB	4703	broad.mit.edu	37	chr2	152487558	152487558	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatttaaaaggtaaaaatgCgaccccacgccttcatagat	6	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152487558	T	T	152487558	1	4	11	0	1	0	0	0	0	0	0	0	10397	783	27	4		4	NEB	2	152487558	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	77096	152487558	90711815	308	28475											
NEB	4703	broad.mit.edu	37	chr2	152534675	152534675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccattttccctttagcCttttcatagtcttttttgta	3	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152534675	A	A	152534675	3	1	11	1	0	0	0	0	1	0	0	0	10397	680	24	2	23004	2	NEB	2	152534675	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	47117	152534675	90664698	309	28476											
STAM2	10254	broad.mit.edu	37	chr2	152992139	152992139	+	Intron	SNP	T	A	A													taaaaatacagtgcaaaaaaTatcatttgttccccacattt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152992139	A	A	152992139	1	1	11	0	1	0	0	0	0	0	0	0	15367	1421	49	5		5	STAM2	2	152992139	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	457464	152992139	90207234	310	28477	175	2									
STAM2	10254	broad.mit.edu	37	chr2	152992141	152992142	+	Intron	DNP	TC	AA	AA													aaaatacagtgcaaaaaataTcatttgttccccacatttta							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152992142	AA	AA	152992141	1	1	11	0	1	0	0	0	0	0	0	0	15367	1450	50	5		5	STAM2	2	152992141	Intron	DNP	TC	TCGA-05-4398-01A-01D-1265-08	2	152992141	90207232	311	28478	175	2									
GALNT13	114805	broad.mit.edu	37	chr2	155158135	155158135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatttttctttctctacaGgagaaaataaaattgaaaca	5	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155158135	T	T	155158135	1	4	11	0	1	0	0	0	0	0	0	0	6273	1015	35	2		2	GALNT13	2	155158135	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2165994	155158135	88041238	312	28479											
KCNJ3	3760	broad.mit.edu	37	chr2	155566362	155566362	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagatatgccataaagtttCtttataccataatgacatta	4	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155566362	A	A	155566362	1	1	11	0	1	0	0	0	0	0	0	0	8122	928	32	3		3	KCNJ3	2	155566362	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	408227	155566362	87633011	313	28480											
KCNJ3	3760	broad.mit.edu	37	chr2	155711814	155711814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taagaaaaatgaactctgatCgcttcacataacaaagcact	5	9	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155711814	G	G	155711814	3	3	11	1	0	0	0	0	1	0	0	0	8122	884	31	4	1505	4	KCNJ3	2	155711814	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	145452	155711814	87487559	314	28481											
LY75	4065	broad.mit.edu	37	chr2	160728993	160728993	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgttaaaaagtgaagaaattCctttatttcatccacatggc	6	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160728993	A	A	160728993	4	1	11	1	0	0	0	0	0	1	0	0	9187	864	30	3	3174	3	LY75	2	160728993	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5017179	160728993	82470380	315	28482											
TBR1	10716	broad.mit.edu	37	chr2	162272897	162272897	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaaaccagggacgggaGggcgagtgttcaggttctag	15	6	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162272897	T	T	162272897	1	4	11	1	0	0	0	0	0	0	0	0	15769	1015	35	2		2	TBR1	2	162272897	Translation_Start_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08	1543904	162272897	80926476	316	28483											
FAP	2191	broad.mit.edu	37	chr2	163070536	163070536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttttagccactgcaaaCatactcgttcatcagtaacc	4	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163070536	A	A	163070536	3	1	11	1	0	0	0	0	1	0	0	0	5730	478	17	3	1432	3	FAP	2	163070536	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	797639	163070536	80128837	317	28484											
SCN3A	6328	broad.mit.edu	37	chr2	165948857	165948857	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacgagcttcagcacaaattCtccagtgaacagaacaatga	8	10	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165948857	T	T	165948857	3	4	11	1	0	0	0	0	1	0	0	0	14031	922	32	4	1296	4	SCN3A	2	165948857	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2878321	165948857	77250516	318	28485											
SCN2A	6326	broad.mit.edu	37	chr2	166168555	166168555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacttttattttttagagGggcaaaatgatgctctgctt	9	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166168555	T	T	166168555	3	4	11	1	0	0	0	0	1	0	0	0	14029	1232	43	2	1113	2	SCN2A	2	166168555	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	219698	166168555	77030818	319	28486											
SCN2A	6326	broad.mit.edu	37	chr2	166210846	166210846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttgttaaaagaaaaataCgtgaatttattcagaaagcc	6	4	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166210846	A	A	166210846	3	1	11	1	0	0	0	0	1	0	0	0	14029	536	19	3	3222	3	SCN2A	2	166210846	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	42291	166210846	76988527	320	28487											
SCN2A	6326	broad.mit.edu	37	chr2	166229923	166229923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactgacactttgtaccatGgaaatgtcaaatttatggag	9	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166229923	A	A	166229923	1	1	11	0	1	0	0	0	0	0	0	0	14029	1363	47	4		4	SCN2A	2	166229923	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	19077	166229923	76969450	321	28488											
CSRNP3	80034	broad.mit.edu	37	chr2	166451769	166451769	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaattgtctggttctacagCaaaactaattgtgtcatttt	6	7	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166451769	A	A	166451769	1	1	11	0	1	0	0	0	0	0	0	0	3999	725	25	3		3	CSRNP3	2	166451769	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	221846	166451769	76747604	322	28489											
SCN1A	6323	broad.mit.edu	37	chr2	166903468	166903468	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatatcatgtacgtttTcccagcagcacgtaatgtct	6	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166903468	A	A	166903468	4	1	11	1	0	0	0	0	0	1	0	0	14027	1792	62	5	4912	5	SCN1A	2	166903468	Nonsense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	451699	166903468	76295905	323	28490											
XIRP2	129446	broad.mit.edu	37	chr2	168106557	168106557	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaaagctgaacataaaaaAttgccccagccatataatag	6	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168106557	T	T	168106557	3	4	11	1	0	0	0	0	1	0	0	0	17557	98	4	5	8685	5	XIRP2	2	168106557	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1203089	168106557	75092816	324	28491											
ABCB11	8647	broad.mit.edu	37	chr2	169791861	169791861	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctccagctcagtctcAagtgcttcaatgaaccgcct	8	14	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169791861	C	C	169791861	2	2	11	1	0	0	0	0	0	0	0	1	42	117	5	5		5	ABCB11	2	169791861	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	1685304	169791861	73407512	325	28492											
LRP2	4036	broad.mit.edu	37	chr2	170024984	170024984	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggctcacatgctacaCgtaagaaacaatgagatttg	8	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170024984	T	T	170024984	1	4	11	0	1	0	0	0	0	0	0	0	9043	551	19	4		4	LRP2	2	170024984	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	233123	170024984	73174389	326	28493											
LRP2	4036	broad.mit.edu	37	chr2	170048350	170048350	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctcaattcacctgaatatCtttgggatacacagtccgta	6	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170048350	G	G	170048350	3	3	11	1	0	0	0	0	1	0	0	0	9043	912	32	4	5071	4	LRP2	2	170048350	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	23366	170048350	73151023	327	28494											
KLHL23	151230	broad.mit.edu	37	chr2	170592412	170592412	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatatgggatcctttgacAaatgtttggattcagggagc	11	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170592412	T	T	170592412	2	4	11	1	0	0	0	0	0	0	0	1	8449	117	5	5		5	KLHL23	2	170592412	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	544062	170592412	72606961	328	28495											
GORASP2	26003	broad.mit.edu	37	chr2	171822343	171822343	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccccgaaacttacctggCattgcacctctccccctgcc	5	21	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171822343	T	T	171822343	2	4	11	1	0	0	0	0	0	0	0	1	6640	697	25	4		4	GORASP2	2	171822343	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1229931	171822343	71377030	329	28496											
CYBRD1	79901	broad.mit.edu	37	chr2	172398356	172398356	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaaacaattcagagactgTaaatgttttcttttcttttt	4	5	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172398356	A	A	172398356	1	1	11	0	1	0	0	0	0	0	0	0	4167	1653	57	5		5	CYBRD1	2	172398356	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	576013	172398356	70801017	330	28497											
WIPF1	7456	broad.mit.edu	37	chr2	175440024	175440024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccccctccaaaacttccaCcgcctccgccaccacctcct	3	25	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175440024	T	T	175440024	3	4	11	1	0	0	0	0	1	0	0	0	17494	507	18	4	1265	4	WIPF1	2	175440024	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3041668	175440024	67759349	331	28498											
AGPS	8540	broad.mit.edu	37	chr2	178326701	178326701	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggatgggtatctactcgCgcatcaggcatgaagaagaa	14	7	2	3	rs146526791		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178326701	T	T	178326701	2	4	11	1	0	0	0	0	0	0	0	1	394	755	27	4		4	AGPS	2	178326701	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2886677	178326701	64872672	332	28499											
PDE11A	50940	broad.mit.edu	37	chr2	178879235	178879235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatgtgcattgttgtcaGggagaaggagagagaggttt	16	4	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178879235	T	T	178879235	1	4	11	0	1	0	0	0	0	0	0	0	11725	1015	35	2		2	PDE11A	2	178879235	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	552534	178879235	64320138	333	28500											
RBM45	129831	broad.mit.edu	37	chr2	178981037	178981037	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagtcaccgagatgttgaaGatgaagaacttacaagaatc	10	6	1	6			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178981037	A	A	178981037	3	1	11	1	0	0	0	0	1	0	0	0	13247	942	33	4	355	4	RBM45	2	178981037	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	101802	178981037	64218336	334	28501											
DFNB59	494513	broad.mit.edu	37	chr2	179322515	179322515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcaggagtggccaggaGttcaaggttacagtaggcta	16	6	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179322515	T	T	179322515	1	4	11	0	1	0	0	0	0	0	0	0	4496	1044	36	3		3	DFNB59	2	179322515	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	341478	179322515	63876858	335	28502											
TTN	7273	broad.mit.edu	37	chr2	179416962	179416962	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggctttgatggtgggccaAgggtgatgactgtaatgggg	19	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179416962	T	T	179416962	3	4	11	1	0	0	0	0	1	0	0	0	16861	72	3	5	17426	5	TTN	2	179416962	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	94447	179416962	63782411	336	28503											
TTN	7273	broad.mit.edu	37	chr2	179438511	179438511	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgtcaagaactttgacAttgaaaatgtgtttagcaaa	9	5	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179438511	G	G	179438511	2	3	11	1	0	0	0	0	0	0	0	1	16861	214	8	5		5	TTN	2	179438511	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	21549	179438511	63760862	337	28504											
TTN	7273	broad.mit.edu	37	chr2	179451145	179451145	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcaagaatttctagagctAgattcctcagggagaaatgt	9	6	3	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179451145	G	G	179451145	1	3	11	0	1	0	0	0	0	0	0	0	16861	435	15	5		5	TTN	2	179451145	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	12634	179451145	63748228	338	28505											
TTN	7273	broad.mit.edu	37	chr2	179455772	179455772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattttcagctttgtcttaCtgcttccggaagagacaaca	9	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179455772	A	A	179455772	3	1	11	1	0	0	0	0	1	0	0	0	16861	565	20	3	47535	3	TTN	2	179455772	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	4627	179455772	63743601	339	28506											
TTN	7273	broad.mit.edu	37	chr2	179489195	179489195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagaagaatacttacgcaCgacattcaggttacaggaag	10	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179489195	A	A	179489195	3	1	11	1	0	0	0	0	1	0	0	0	16861	536	19	3	63365	3	TTN	2	179489195	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	33423	179489195	63710178	340	28507											
TTN	7273	broad.mit.edu	37	chr2	179495427	179495427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagggtctgatagagaaaCtgctatcatgttttaaatgt	9	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179495427	A	A	179495427	1	1	11	0	1	0	0	0	0	0	0	0	16861	580	20	3		3	TTN	2	179495427	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6232	179495427	63703946	341	28508											
TTN	7273	broad.mit.edu	37	chr2	179516297	179516297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtagttgtttaagctcatGgtttcaatgaaatgtgaaaa	9	3	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179516297	T	T	179516297	1	4	11	0	1	0	0	0	0	0	0	0	16861	1363	47	2		2	TTN	2	179516297	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	20870	179516297	63683076	342	28509											
TTN	7273	broad.mit.edu	37	chr2	179544998	179544998	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctctaacaggtggtgctActtcttttctagggacaggt	10	9	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179544998	T	T	179544998	3	4	11	1	0	0	0	0	1	0	0	0	16861	391	14	5	71024	5	TTN	2	179544998	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	28701	179544998	63654375	343	28510											
TTN	7273	broad.mit.edu	37	chr2	179550425	179550425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaatcaaaatagcaaaaGtttaacccttgccaaacccc	5	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179550425	T	T	179550425	1	4	11	0	1	0	0	0	0	0	0	0	16861	1044	36	3		3	TTN	2	179550425	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	5427	179550425	63648948	344	28511											
TTN	7273	broad.mit.edu	37	chr2	179641550	179641551	+	Missense_Mutation	DNP	GG	TT	TT													ctcttggccatatcgcaaatGgaggggctccagttctgggg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179641551	TT	TT	179641550	3	4	11	1	0	0	0	0	1	0	0	0	16861	1348	47	2	106287	2	TTN	2	179641550	Missense_Mutation	DNP	GG	TCGA-05-4398-01A-01D-1265-08	91125	179641550	63557823	345	28512											
TTN	7273	broad.mit.edu	37	chr2	179647345	179647345	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacactaaaagaagacaaaAgtttctcattgagatgagat	8	5	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179647345	C	C	179647345	1	2	11	0	1	0	0	0	0	0	0	0	16861	87	3	5		5	TTN	2	179647345	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	5795	179647345	63552028	346	28513											
ITGA4	3676	broad.mit.edu	37	chr2	182347350	182347350	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caccatcagagaggaaggaaGagtgtttgtgtacatcaact	11	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182347350	T	T	182347350	3	4	11	1	0	0	0	0	1	0	0	0	7948	942	33	3	1047	3	ITGA4	2	182347350	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2700005	182347350	60852023	347	28514											
CERKL	375298	broad.mit.edu	37	chr2	182403786	182403786	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattagatttatgtttactgGttgacaataagcggtgaaat	9	3	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182403786	C	C	182403786	1	2	11	0	1	0	0	0	0	0	0	0	3298	1276	44	4		4	CERKL	2	182403786	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	56436	182403786	60795587	348	28515											
PDE1A	5136	broad.mit.edu	37	chr2	183032866	183032866	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caatctgcaaaaatagatttCctgtctcacacaggacaggg	8	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183032866	T	T	183032866	1	4	11	0	1	0	0	0	0	0	0	0	11727	870	30	4		4	PDE1A	2	183032866	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	629080	183032866	60166507	349	28516											
DNAJC10	54431	broad.mit.edu	37	chr2	183624097	183624097	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagtaattagataaaacAttgtaagtatgtaattttta	5	1	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183624097	C	C	183624097	1	2	11	0	1	0	0	0	0	0	0	0	4669	232	8	5		5	DNAJC10	2	183624097	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	591231	183624097	59575276	350	28517											
ZSWIM2	151112	broad.mit.edu	37	chr2	187698691	187698691	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcacgaaatgtaaacgtGtgggaaagatggcagcagct	12	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187698691	A	A	187698691	2	1	11	1	0	0	0	0	0	0	0	1	18370	1368	48	4		4	ZSWIM2	2	187698691	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	4074594	187698691	55500682	351	28518											
CALCRL	10203	broad.mit.edu	37	chr2	188225499	188225499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgaggaaaaaaaaaaccCcaatatttacttgtttatga	6	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188225499	A	A	188225499	1	1	11	0	1	0	0	0	0	0	0	0	2606	638	22	2		2	CALCRL	2	188225499	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	526808	188225499	54973874	352	28519											
TFPI	7035	broad.mit.edu	37	chr2	188331706	188331706	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcatatgctattttcactCtctgcttctttctttttctt	2	11	6	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188331706	A	A	188331706	3	1	11	1	0	0	0	0	1	0	0	0	15931	913	32	3	46	3	TFPI	2	188331706	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	106207	188331706	54867667	353	28520											
COL3A1	1281	broad.mit.edu	37	chr2	189868724	189868724	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagggtaacccaggaccccCaggtcccagcggttctccag	12	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189868724	T	T	189868724	3	4	11	1	0	0	0	0	1	0	0	0	3720	594	21	4	2832	4	COL3A1	2	189868724	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1537018	189868724	53330649	354	28521											
COL3A1	1281	broad.mit.edu	37	chr2	189870139	189870139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtccccctggaccccagGgtcttcctggtctggctggt	14	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189870139	T	T	189870139	3	4	11	1	0	0	0	0	1	0	0	0	3720	1232	43	2	3157	2	COL3A1	2	189870139	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1415	189870139	53329234	355	28522											
COL5A2	1290	broad.mit.edu	37	chr2	189933473	189933473	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgttacaagaaatgtccAgctttctgggctggttctta	10	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189933473	C	C	189933473	1	2	11	0	1	0	0	0	0	0	0	0	3729	203	7	5		5	COL5A2	2	189933473	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	63334	189933473	53265900	356	28523											
MFSD6	54842	broad.mit.edu	37	chr2	191353516	191353516	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagaggatgtggtgccatGatcggaggcgtgttagtcaa	17	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191353516	A	A	191353516	3	1	11	1	0	0	0	0	1	0	0	0	9628	1290	45	4	1774	4	MFSD6	2	191353516	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1420043	191353516	51845857	357	28524											
STAT1	6772	broad.mit.edu	37	chr2	191865767	191865767	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttcccctacagaaagtttCagaataaatgcatgtgttta	6	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191865767	G	G	191865767	1	3	11	0	1	0	0	0	0	0	0	0	15382	841	29	4		4	STAT1	2	191865767	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	512251	191865767	51333606	358	28525											
DNAH7	56171	broad.mit.edu	37	chr2	196821991	196821991	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttttcacctacctgcatGacacttctcattatatctct	2	12	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196821991	A	A	196821991	2	1	11	1	0	0	0	0	0	0	0	1	4646	1277	45	4		4	DNAH7	2	196821991	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	4956224	196821991	46377382	359	28526											
BOLL	66037	broad.mit.edu	37	chr2	198621146	198621146	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaattactttaagactaatAcatacctctggaactgaagt	5	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198621146	G	G	198621146	1	3	11	0	1	0	0	0	0	0	0	0	1495	406	14	5		5	BOLL	2	198621146	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1799155	198621146	44578227	360	28527											
SATB2	23314	broad.mit.edu	37	chr2	200245120	200245120	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattctttggctaatgtgctCtggttcatctctttgagcag	9	9	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200245120	A	A	200245120	3	1	11	1	0	0	0	0	1	0	0	0	13966	912	32	3	1665	3	SATB2	2	200245120	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1623974	200245120	42954253	361	28528											
ALS2	57679	broad.mit.edu	37	chr2	202625565	202625565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagcccatacagttcaaCtctagacacacttttatttt	4	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202625565	A	A	202625565	1	1	11	0	1	0	0	0	0	0	0	0	550	564	20	3		3	ALS2	2	202625565	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2380445	202625565	40573808	362	28529											
NBEAL1	65065	broad.mit.edu	37	chr2	204001388	204001388	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtaatgtgtaagggactaGaaaagtctgatgatgatact	11	3	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204001388	A	A	204001388	3	1	11	1	0	0	0	0	1	0	0	0	10282	943	33	4	4475	4	NBEAL1	2	204001388	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1375823	204001388	39197985	363	28530											
CYP20A1	57404	broad.mit.edu	37	chr2	204116833	204116833	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actttgccctcctcctaaagGtaaggtgataagtagtttgg	10	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204116833	C	C	204116833	5	2	11	1	0	0	0	0	0	0	1	0	4185	1275	44	4	447	4	CYP20A1	2	204116833	Splice_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08	115445	204116833	39082540	364	28531											
ABI2	10152	broad.mit.edu	37	chr2	204193298	204193298	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggccgccgggccctcttcGacagctacacaaatctggaa	12	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204193298	C	C	204193298	3	2	11	1	0	0	0	0	1	0	0	0	89	1058	37	4	63	4	ABI2	2	204193298	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	76465	204193298	39006075	365	28532											
ADAM23	8745	broad.mit.edu	37	chr2	207408076	207408076	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagttgcctgatggcgttctActcctccagcaactttgtct	8	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207408076	T	T	207408076	1	4	11	0	1	0	0	0	0	0	0	0	245	406	14	5		5	ADAM23	2	207408076	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	3214778	207408076	35791297	366	28533											
PLEKHM3	389072	broad.mit.edu	37	chr2	208795744	208795744	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccgcagcacggcggccaGcggctctgcgtggtggtaca	16	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208795744	A	A	208795744	2	1	11	1	0	0	0	0	0	0	0	1	12177	962	34	4		4	PLEKHM3	2	208795744	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1387668	208795744	34403629	367	28534											
PTH2R	5746	broad.mit.edu	37	chr2	209271772	209271772	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacagccgttccgggcatgGccgggctgggggcgtcgctc	17	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209271772	C	C	209271772	3	2	11	1	0	0	0	0	1	0	0	0	12866	1203	42	4	6	4	PTH2R	2	209271772	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	476028	209271772	33927601	368	28535											
PTH2R	5746	broad.mit.edu	37	chr2	209345847	209345847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctagctaccaaaatctGggagaccaatgcagttgggc	11	9	2	1	rs151296979		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209345847	T	T	209345847	3	4	11	1	0	0	0	0	1	0	0	0	12866	1357	47	2	1072	2	PTH2R	2	209345847	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	74075	209345847	33853526	369	28536											
CPS1	1373	broad.mit.edu	37	chr2	211447320	211447320	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgttgcttccttttaactgtCtaatttttttaatttgatag	5	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211447320	G	G	211447320	1	3	11	0	1	0	0	0	0	0	0	0	3855	928	32	4		4	CPS1	2	211447320	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2101473	211447320	31752053	370	28537											
CPS1	1373	broad.mit.edu	37	chr2	211476856	211476856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacaggtcatggctattggtCgtacctttgaggagagtttc	12	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211476856	A	A	211476856	3	1	11	1	0	0	0	0	1	0	0	0	3855	884	31	3	2507	3	CPS1	2	211476856	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	29536	211476856	31722517	371	28538											
CPS1	1373	broad.mit.edu	37	chr2	211518747	211518747	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctctgttttccttcgtgacAggagcacccagtggtgctga	11	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211518747	T	T	211518747	5	4	11	1	0	0	0	0	0	0	1	0	3855	202	7	5	3615	5	CPS1	2	211518747	Splice_Site	SNP	A	TCGA-05-4398-01A-01D-1265-08	41891	211518747	31680626	372	28539											
CPS1	1373	broad.mit.edu	37	chr2	211539552	211539552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattgtcttttaagatgttGtaaggaaataccatattgca	7	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211539552	T	T	211539552	1	4	11	0	1	0	0	0	0	0	0	0	3855	1392	48	3		3	CPS1	2	211539552	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	20805	211539552	31659821	373	28540											
TNS1	7145	broad.mit.edu	37	chr2	218713154	218713154	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggccgtgtggccagcatGggcaggccccgcccggctgg	20	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218713154	A	A	218713154	3	1	11	1	0	0	0	0	1	0	0	0	16466	1348	47	4	3564	4	TNS1	2	218713154	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	7173602	218713154	24486219	374	28541											
ZNF142	7701	broad.mit.edu	37	chr2	219520858	219520858	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcccactggcctgcttgCaactgtgtttgtacctgggg	12	11	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219520858	G	G	219520858	1	3	11	0	1	0	0	0	0	0	0	0	17857	725	25	4		4	ZNF142	2	219520858	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	807704	219520858	23678515	375	28542											
CCDC108	255101	broad.mit.edu	37	chr2	219869225	219869225	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgaggggccctgaagCccctggggagccctggcttc	15	14	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219869225	T	T	219869225	1	4	11	0	1	0	0	0	0	0	0	0	2769	754	26	4		4	CCDC108	2	219869225	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	348367	219869225	23330148	376	28543											
SPEG	10290	broad.mit.edu	37	chr2	220326798	220326798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagacccctgaggctgGggcctagcctcctgtgtgcc	14	14	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220326798	T	T	220326798	1	4	11	0	1	0	0	0	0	0	0	0	15154	1247	43	2		2	SPEG	2	220326798	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	457573	220326798	22872575	377	28544											
STK11IP	114790	broad.mit.edu	37	chr2	220478856	220478856	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagagcagagccttctAaagttccctggcctgcctct	12	12	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220478856	G	G	220478856	1	3	11	0	1	0	0	0	0	0	0	0	15406	377	13	5		5	STK11IP	2	220478856	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	152058	220478856	22720517	378	28545											
RHBDD1	84236	broad.mit.edu	37	chr2	227779021	227779021	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacacagcaggactgagtgaAgaagaacagctcgagagagc	13	8	0	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227779021	T	T	227779021	3	4	11	1	0	0	0	0	1	0	0	0	13425	69	3	5	828	5	RHBDD1	2	227779021	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	7300165	227779021	15420352	379	28546											
SPHKAP	80309	broad.mit.edu	37	chr2	229046399	229046399	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacccagctcccagagtgccAgactggcgcgcgccaggaga	14	15	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229046399	T	T	229046399	1	4	11	0	1	0	0	0	0	0	0	0	15166	203	7	5		5	SPHKAP	2	229046399	5'Flank	SNP	A	TCGA-05-4398-01A-01D-1265-08	1267378	229046399	14152974	380	28547											
ALPPL2	251	broad.mit.edu	37	chr2	233272591	233272591	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaccaccacacgggtgcAgcatgcctcgccagccggcg	13	16	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233272591	C	C	233272591	3	2	11	1	0	0	0	0	1	0	0	0	549	188	7	5	530	5	ALPPL2	2	233272591	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	4226192	233272591	9926782	381	28548											
CHRND	1144	broad.mit.edu	37	chr2	233394577	233394577	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttgccctgcccagcccctCattctgtccccaggccctgc	8	21	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233394577	A	A	233394577	1	1	11	0	1	0	0	0	0	0	0	0	3425	841	29	3		3	CHRND	2	233394577	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	121986	233394577	9804796	382	28549											
NGEF	25791	broad.mit.edu	37	chr2	233759415	233759415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtctcaagcatgtgccCtggggatgaagaagggccct	14	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233759415	A	A	233759415	1	1	11	0	1	0	0	0	0	0	0	0	10489	696	24	2		2	NGEF	2	233759415	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	364838	233759415	9439958	383	28550											
UGT1A4	54657	broad.mit.edu	37	chr2	234627526	234627526	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggactgctgctcctcctCagtgtccagccctgggctga	11	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234627526	T	T	234627526	2	4	11	1	0	0	0	0	0	0	0	1	17073	813	29	4		4	UGT1A4	2	234627526	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	868111	234627526	8571847	384	28551											
COL6A3	1293	broad.mit.edu	37	chr2	238267099	238267099	+	Intron	DEL	C	-	-													agtagaattcttcctttcatCcccctttcccaacaaccctc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	238267099	-	-	238267099	6	5	11	0	1	1	0	1	0	0	0	0	3733	870	30	0		0	COL6A3	2	238267099	Intron	DEL	C	TCGA-05-4398-01A-01D-1265-08	3639573	238267099	4932274	385	28552											
COL6A3	1293	broad.mit.edu	37	chr2	238271697	238271697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctcgctggatttccagCgatttgctatctccatttcc	7	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238271697	A	A	238271697	1	1	11	0	1	0	0	0	0	0	0	0	3733	783	27	3		3	COL6A3	2	238271697	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4598	238271697	4927676	386	28553											
HDLBP	3069	broad.mit.edu	37	chr2	242192683	242192683	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcagaacctattactcaCccagctaggatgccctgggt	9	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242192683	T	T	242192683	1	4	11	0	1	0	0	0	0	0	0	0	7092	522	18	4		4	HDLBP	2	242192683	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3920986	242192683	1006690	387	28554											
STK25	10494	broad.mit.edu	37	chr2	242439726	242439726	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggtgcgacagcagggcctCagctcctgtcccaggcccaa	12	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242439726	A	A	242439726	1	1	11	0	1	0	0	0	0	0	0	0	15412	841	29	3		3	STK25	2	242439726	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	247043	242439726	759647	388	28555											
ATG4B	23192	broad.mit.edu	37	chr2	242607954	242607955	+	Splice_Site	DNP	GG	CT	CT													ccacctgcctcatcctcccaGgtgaggagctcatctacctg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	242607955	CT	CT	242607954	5	2	11	1	0	0	0	0	0	0	1	0	1101	1014	35	4	849	4	ATG4B	2	242607954	Splice_Site	DNP	GG	TCGA-05-4398-01A-01D-1265-08	168228	242607954	591419	389	28556											
CHL1	10752	broad.mit.edu	37	chr3	361435	361435	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaagattttcattcttacCgggttgtcttcttcctgaag	7	8	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	361435	A	A	361435	1	1	11	0	1	0	0	0	0	0	0	0	3380	667	23	1		1	CHL1	3	361435	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08		361435	197660995	390	28557											
CNTN6	27255	broad.mit.edu	37	chr3	1445042	1445042	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattcttagaacctagcacCcattttctttccattgtcat	3	12	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1445042	A	A	1445042	2	1	11	1	0	0	0	0	0	0	0	1	3677	610	22	2		2	CNTN6	3	1445042	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1083607	1445042	196577388	391	28558											
CNTN4	152330	broad.mit.edu	37	chr3	3078979	3078979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggattggggagcccagcCgcccctcagagaaacggaga	15	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3078979	A	A	3078979	3	1	11	1	0	0	0	0	1	0	0	0	3675	652	23	1	2117	1	CNTN4	3	3078979	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1633937	3078979	194943451	392	28559											
GRM7	2917	broad.mit.edu	37	chr3	7348029	7348029	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attattggtttacaaaatatCtttatatattagggatataa	5	2	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7348029	A	A	7348029	1	1	11	0	1	0	0	0	0	0	0	0	6868	928	32	3		3	GRM7	3	7348029	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4269050	7348029	190674401	393	28560											
TADA3	10474	broad.mit.edu	37	chr3	9831304	9831304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaagcccagaacctgcaGggagaagcagatcctgagtg	13	10	0	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9831304	T	T	9831304	1	4	11	0	1	0	0	0	0	0	0	0	15631	1015	35	2		2	TADA3	3	9831304	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2483275	9831304	188191126	394	28561											
PRRT3	285368	broad.mit.edu	37	chr3	9991809	9991809	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggccatggtctactcCgatgcctgggcctaaagccc	12	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9991809	T	T	9991809	1	4	11	0	1	0	0	0	0	0	0	0	12717	667	23	4		4	PRRT3	3	9991809	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	160505	9991809	188030621	395	28562											
ATP2B2	491	broad.mit.edu	37	chr3	10417183	10417183	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacggcgaccaccagcacCgtcacgccaatgatgaagaa	11	14	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10417183	A	A	10417183	2	1	11	1	0	0	0	0	0	0	0	1	1144	639	23	1		1	ATP2B2	3	10417183	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	425374	10417183	187605247	396	28563											
ATP2B2	491	broad.mit.edu	37	chr3	10452270	10452270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcggtggccaggtgtgcGgggcggttcgtgggtctgag	22	7	1	1	rs7627180	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10452270	T	T	10452270	1	4	11	0	1	0	0	0	0	0	0	0	1144	1131	39	1		1	ATP2B2	3	10452270	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	35087	10452270	187570160	397	28564											
SYN2	6854	broad.mit.edu	37	chr3	12224792	12224792	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggagttttgtttttatctCttacatttttgtcttccaga	6	6	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12224792	T	T	12224792	1	4	11	0	1	0	0	0	0	0	0	0	15560	928	32	4		4	SYN2	3	12224792	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1772522	12224792	185797638	398	28565											
RAF1	5894	broad.mit.edu	37	chr3	12626588	12626588	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggcccaggggctcccacGagttgggtcctttcgcacca	14	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12626588	T	T	12626588	1	4	11	0	1	0	0	0	0	0	0	0	13110	1073	37	3		3	RAF1	3	12626588	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	401796	12626588	185395842	399	28566											
NUP210	23225	broad.mit.edu	37	chr3	13427867	13427867	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccgggttcagaaggatgTtttccaaaatcagcagcctg	12	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13427867	G	G	13427867	3	3	11	1	0	0	0	0	1	0	0	0	10855	1725	60	5	5078	5	NUP210	3	13427867	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	801279	13427867	184594563	400	28567											
GRIP2	80852	broad.mit.edu	37	chr3	14564532	14564532	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagggccaccgggccgcaCgtaggtcaggacaagcgggc	18	13	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14564532	T	T	14564532	3	4	11	1	0	0	0	0	1	0	0	0	6854	536	19	4	2668	4	GRIP2	3	14564532	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1136665	14564532	183457898	401	28568											
RFTN1	23180	broad.mit.edu	37	chr3	16358231	16358231	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcaagccaagccaaagGgtaggtaacacacaacacca	10	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16358231	A	A	16358231	1	1	11	0	1	0	0	0	0	0	0	0	13366	1247	43	4		4	RFTN1	3	16358231	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	1793699	16358231	181664199	402	28569											
EFHB	151651	broad.mit.edu	37	chr3	19975080	19975080	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccactagccaaaggagctCtcctgctccctgcagcctgt	10	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19975080	A	A	19975080	3	1	11	1	0	0	0	0	1	0	0	0	4985	913	32	3	2122	3	EFHB	3	19975080	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3616849	19975080	178047350	403	28570											
ZNF385D	79750	broad.mit.edu	37	chr3	21552286	21552286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataagtaaacagacatgggGctagacaagggagggaatcc	13	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21552286	T	T	21552286	1	4	11	0	1	0	0	0	0	0	0	0	18004	1218	42	3		3	ZNF385D	3	21552286	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1577206	21552286	176470144	404	28571											
GADL1	339896	broad.mit.edu	37	chr3	30891521	30891521	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggattaatcttggcgaAccagacagccccttttcctt	7	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30891521	C	C	30891521	2	2	11	1	0	0	0	0	0	0	0	1	6245	30	2	5		5	GADL1	3	30891521	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	9339235	30891521	167130909	405	28572											
CNOT10	25904	broad.mit.edu	37	chr3	32767154	32767154	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcatgatttaaaaagcAtgaatgtggttaaaataccc	7	5	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32767154	G	G	32767154	1	3	11	0	1	0	0	0	0	0	0	0	3650	232	8	5		5	CNOT10	3	32767154	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1875633	32767154	165255276	406	28573											
ARPP21	10777	broad.mit.edu	37	chr3	35750461	35750461	+	Frame_Shift_Del	DEL	C	-	-													gatttcttttttctgttcagCaaaacagaatgcatccattt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35750461	-	-	35750461	7	5	11	1	0	1	0	1	0	0	0	0	982	724	25	0	843	0	ARPP21	3	35750461	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	2983307	35750461	162271969	407	28574											
STAC	6769	broad.mit.edu	37	chr3	36570495	36570495	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtgagtaaaccacacaaAcacattccagatatgagcca	7	11	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36570495	T	T	36570495	1	4	11	0	1	0	0	0	0	0	0	0	15357	58	2	5		5	STAC	3	36570495	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	820034	36570495	161451935	408	28575											
LRRFIP2	9209	broad.mit.edu	37	chr3	37163247	37163247	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttgtttatcagaacaactGagcaaagagcagtcagttaa	9	6	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37163247	A	A	37163247	1	1	11	0	1	0	0	0	0	0	0	0	9115	1305	45	4		4	LRRFIP2	3	37163247	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	592752	37163247	160859183	409	28576											
C3orf35	339883	broad.mit.edu	37	chr3	37458897	37458897	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacacatggaataataaacaGaggaaggcgggctaatgcag	12	6	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37458897	T	T	37458897	3	4	11	1	0	0	0	0	1	0	0	0	2247	942	33	3	142	3	C3orf35	3	37458897	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	295650	37458897	160563533	410	28577											
ITGA9	3680	broad.mit.edu	37	chr3	37627227	37627227	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttgcgaaggggtggtgaaCactaatatgcctgactccat	11	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37627227	G	G	37627227	1	3	11	0	1	0	0	0	0	0	0	0	7953	493	17	4		4	ITGA9	3	37627227	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	168330	37627227	160395203	411	28578											
SCN10A	6336	broad.mit.edu	37	chr3	38766748	38766748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagaagatgttccagtgcCtgggctcctgggtgtcaggt	14	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38766748	A	A	38766748	3	1	11	1	0	0	0	0	1	0	0	0	14025	681	24	2	2769	2	SCN10A	3	38766748	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1139521	38766748	159255682	412	28579											
TTC21A	199223	broad.mit.edu	37	chr3	39178668	39178668	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accggcctgtgtctgataccCaggtctaacacctgcagcta	9	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39178668	T	T	39178668	1	4	11	0	1	0	0	0	0	0	0	0	16813	609	21	4		4	TTC21A	3	39178668	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	411920	39178668	158843762	413	28580											
EIF1B	10289	broad.mit.edu	37	chr3	40352459	40352459	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacattcatataagaatccAgcaacggaacggcagaaaga	8	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40352459	T	T	40352459	3	4	11	1	0	0	0	0	1	0	0	0	5034	188	7	5	113	5	EIF1B	3	40352459	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1173791	40352459	157669971	414	28581											
KBTBD5	131377	broad.mit.edu	37	chr3	42730269	42730269	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatctcccagaggctgtcaGgggtttgtcctggctgcccc	13	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42730269	C	C	42730269	1	2	11	0	1	0	0	0	0	0	0	0	8066	1015	35	4		4	KBTBD5	3	42730269	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2377810	42730269	155292161	415	28582											
TGM4	7047	broad.mit.edu	37	chr3	44943063	44943063	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattgggaattggactggGgactacgaaggtggcacagc	15	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44943063	T	T	44943063	2	4	11	1	0	0	0	0	0	0	0	1	15955	1219	43	2		2	TGM4	3	44943063	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2212794	44943063	153079367	416	28583											
CCR5	1234	broad.mit.edu	37	chr3	46415173	46415173	+	Frame_Shift_Del	DEL	C	-	-													gtccttctcctgaacaccttCcaggaattctttggcctgaa							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46415173	-	-	46415173	7	5	11	1	0	1	0	1	0	0	0	0	2974	854	30	0	782	0	CCR5	3	46415173	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	1472110	46415173	151607257	417	28584											
COL7A1	1294	broad.mit.edu	37	chr3	48603953	48603953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacactcaccgtcagtgcaGcttctcccttctcgcctcga	6	19	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48603953	T	T	48603953	3	4	11	1	0	0	0	0	1	0	0	0	3736	971	34	3	514	3	COL7A1	3	48603953	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2188780	48603953	149418477	418	28585											
COL7A1	1294	broad.mit.edu	37	chr3	48613683	48613683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccaagcctggctcaccGgcacacttccaggctctcct	7	19	2	0	rs149267939	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48613683	T	T	48613683	3	4	11	1	0	0	0	0	1	0	0	0	3736	1130	39	1	3211	1	COL7A1	3	48613683	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	9730	48613683	149408747	419	28586											
COL7A1	1294	broad.mit.edu	37	chr3	48623721	48623721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgatagccttttcagggCcacccctattcccagacccc	7	17	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48623721	A	A	48623721	1	1	11	0	1	0	0	0	0	0	0	0	3736	754	26	3		3	COL7A1	3	48623721	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	10038	48623721	149398709	420	28587											
BSN	8927	broad.mit.edu	37	chr3	49694957	49694957	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatcatccagtgctgctgcCactgtgagggccatgagcag	12	12	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49694957	T	T	49694957	2	4	11	1	0	0	0	0	0	0	0	1	1539	581	21	4		4	BSN	3	49694957	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1071236	49694957	148327473	421	28588											
RNF123	63891	broad.mit.edu	37	chr3	49739887	49739887	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatccccggctgcactacaCatgccatgccctcagcacct	8	18	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49739887	T	T	49739887	1	4	11	0	1	0	0	0	0	0	0	0	13544	493	17	4		4	RNF123	3	49739887	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	44930	49739887	148282543	422	28589											
MST1R	4486	broad.mit.edu	37	chr3	49933886	49933886	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaaccccacctgtgatTgctcctcgcctcagcccagc	8	19	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49933886	A	A	49933886	1	1	11	0	1	0	0	0	0	0	0	0	9985	1827	63	5		5	MST1R	3	49933886	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	193999	49933886	148088544	423	28590											
TLR9	54106	broad.mit.edu	37	chr3	52263595	52263595	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaacgattcctgctctgcCgtcatctcaggaccccagcg	9	16	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52263595	T	T	52263595	1	4	11	0	1	0	0	0	0	0	0	0	16081	667	23	4		4	TLR9	3	52263595	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2329709	52263595	145758835	424	28591											
GLYCTK	132158	broad.mit.edu	37	chr3	52324424	52324424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatccactcctctggcgGggctcagtggcccgtctggc	13	15	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52324424	T	T	52324424	2	4	11	1	0	0	0	0	0	0	0	1	6546	1219	43	2		2	GLYCTK	3	52324424	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	60829	52324424	145698006	425	28592											
STAB1	23166	broad.mit.edu	37	chr3	52544096	52544096	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacccacaccttctgtctGccccacccgtgacctttcat	6	18	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52544096	A	A	52544096	1	1	11	0	1	0	0	0	0	0	0	0	15355	1334	46	4		4	STAB1	3	52544096	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	219672	52544096	145478334	426	28593											
ITIH1	3697	broad.mit.edu	37	chr3	52820932	52820932	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggccgtgcaagtcggggCttggagccagcctctgtctt	16	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52820932	A	A	52820932	1	1	11	0	1	0	0	0	0	0	0	0	7973	812	28	3		3	ITIH1	3	52820932	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	276836	52820932	145201498	427	28594											
CACNA1D	776	broad.mit.edu	37	chr3	53766839	53766839	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaaagtatttcatttaAagtaggggaagaggaagagg	12	1	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53766839	C	C	53766839	1	2	11	0	1	0	0	0	0	0	0	0	2567	29	1	5		5	CACNA1D	3	53766839	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	945907	53766839	144255591	428	28595											
LRTM1	57408	broad.mit.edu	37	chr3	54958983	54958983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggaaagctccaggggcCagatttgaaagggaattgtt	13	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54958983	A	A	54958983	2	1	11	1	0	0	0	0	0	0	0	1	9131	581	21	2		2	LRTM1	3	54958983	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1192144	54958983	143063447	429	28596											
PXK	54899	broad.mit.edu	37	chr3	58383464	58383464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggtcagtatggggttGggaagggtcttctgggccct	18	7	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58383464	T	T	58383464	1	4	11	0	1	0	0	0	0	0	0	0	12957	1363	47	2		2	PXK	3	58383464	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3424481	58383464	139638966	430	28597											
PTPRG	5793	broad.mit.edu	37	chr3	62118378	62118378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttccttttgctgggatGtgaagggctcagatctctac	10	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62118378	T	T	62118378	1	4	11	0	1	0	0	0	0	0	0	0	12910	1392	48	3		3	PTPRG	3	62118378	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3734914	62118378	135904052	431	28598											
FEZF2	55079	broad.mit.edu	37	chr3	62358243	62358243	+	Frame_Shift_Del	DEL	C	-	-													gccgcctccgccgccgcccgCccggaggctgcttttccaga							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62358243	-	-	62358243	7	5	11	1	0	1	0	1	0	0	0	0	5883	739	26	0	1094	0	FEZF2	3	62358243	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	239865	62358243	135664187	432	28599											
MAGI1	9223	broad.mit.edu	37	chr3	65344638	65344638	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcaaagaacgcagggtgCtcagaatgaattgccaaaca	9	8	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65344638	T	T	65344638	1	4	11	0	1	0	0	0	0	0	0	0	9282	812	28	4		4	MAGI1	3	65344638	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2986395	65344638	132677792	433	28600											
FAM19A1	407738	broad.mit.edu	37	chr3	68194445	68194445	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccatcaacgctcatcagTggtctgagacagtccagcca	8	14	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68194445	G	G	68194445	1	3	11	0	1	0	0	0	0	0	0	0	5578	1711	59	5		5	FAM19A1	3	68194445	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2849807	68194445	129827985	434	28601											
CNTN3	5067	broad.mit.edu	37	chr3	74420485	74420485	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccctgtctcctgggagaCaaatctccgactatcttctt	8	13	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74420485	T	T	74420485	3	4	11	1	0	0	0	0	1	0	0	0	3674	478	17	4	2638	4	CNTN3	3	74420485	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	6226040	74420485	123601945	435	28602											
CNTN3	5067	broad.mit.edu	37	chr3	74535768	74535768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tactcatatcaatatcacttCcattcagctgccatctgtaa	3	12	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74535768	A	A	74535768	3	1	11	1	0	0	0	0	1	0	0	0	3674	855	30	3	2969	3	CNTN3	3	74535768	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	115283	74535768	123486662	436	28603											
CADM2	253559	broad.mit.edu	37	chr3	86062433	86062433	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagagggtgaagggcaAgatgaggacattttacctct	14	5	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86062433	G	G	86062433	1	3	11	0	1	0	0	0	0	0	0	0	2593	87	3	5		5	CADM2	3	86062433	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	11526665	86062433	111959997	437	28604											
HTR1F	3355	broad.mit.edu	37	chr3	88039932	88039932	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattcatctgatcaaaacttGacctcagaggaactgttaaa	6	8	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88039932	A	A	88039932	2	1	11	1	0	0	0	0	0	0	0	1	7510	1281	45	4		4	HTR1F	3	88039932	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1977499	88039932	109982498	438	28605											
EPHA3	2042	broad.mit.edu	37	chr3	89498500	89498500	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcttatggagagagaccAtactgggagatgtccaatca	11	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89498500	T	T	89498500	2	4	11	1	0	0	0	0	0	0	0	1	5210	204	8	5		5	EPHA3	3	89498500	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	1458568	89498500	108523930	439	28606											
OR5K2	402135	broad.mit.edu	37	chr3	98217148	98217148	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctcaggttcagttcaagtCtttaccataggtagtgtctt	8	8	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98217148	A	A	98217148	2	1	11	1	0	0	0	0	0	0	0	1	11261	900	32	3		3	OR5K2	3	98217148	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	8718648	98217148	99805282	440	28607											
DCBLD2	131566	broad.mit.edu	37	chr3	98600294	98600294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcccacatagcaccttaCactgcatggttatttaatgt	5	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98600294	A	A	98600294	1	1	11	0	1	0	0	0	0	0	0	0	4314	493	17	3		3	DCBLD2	3	98600294	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	383146	98600294	99422136	441	28608											
TBC1D23	55773	broad.mit.edu	37	chr3	100020826	100020826	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctctttaaatattggGgtttttcctaaaaaaaattt	7	4	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100020826	C	C	100020826	1	2	11	0	1	0	0	0	0	0	0	0	15732	1247	43	4		4	TBC1D23	3	100020826	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1420532	100020826	98001604	442	28609											
ALCAM	214	broad.mit.edu	37	chr3	105290786	105290786	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaaaactgaagcctaagaGagaaactgtcctagttgtcc	8	10	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105290786	C	C	105290786	1	2	11	0	1	0	0	0	0	0	0	0	487	957	33	4		4	ALCAM	3	105290786	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	5269960	105290786	92731644	443	28610											
MYH15	22989	broad.mit.edu	37	chr3	108173064	108173064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattaaatgatcctgtgagcAactgttgtgttcctagggat	10	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108173064	T	T	108173064	1	4	11	0	1	0	0	0	0	0	0	0	10128	145	5	5		5	MYH15	3	108173064	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2882278	108173064	89849366	444	28611											
KIAA1524	57650	broad.mit.edu	37	chr3	108278872	108278872	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatcacaaatctgatcctTtacctacattttaagagtaa	3	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108278872	G	G	108278872	3	3	11	1	0	0	0	0	1	0	0	0	8309	1850	64	5	914	5	KIAA1524	3	108278872	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	105808	108278872	89743558	445	28612											
RETNLB	84666	broad.mit.edu	37	chr3	108474748	108474748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcacagccagtgacagcCatccctgcatgagcacatga	9	14	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108474748	A	A	108474748	3	1	11	1	0	0	0	0	1	0	0	0	13345	594	21	2	126	2	RETNLB	3	108474748	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	195876	108474748	89547682	446	28613											
GRAMD1C	54762	broad.mit.edu	37	chr3	113634792	113634792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaggaggaagaattagaCatgctttgcttttatgttga	12	3	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113634792	A	A	113634792	1	1	11	0	1	0	0	0	0	0	0	0	6815	493	17	3		3	GRAMD1C	3	113634792	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	5160044	113634792	84387638	447	28614											
DRD3	1814	broad.mit.edu	37	chr3	113890532	113890532	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggaagacaagtactagcAcagtcatagagacaacatgc	10	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113890532	G	G	113890532	1	3	11	0	1	0	0	0	0	0	0	0	4798	174	6	5		5	DRD3	3	113890532	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	255740	113890532	84131898	448	28615											
ARHGAP31	57514	broad.mit.edu	37	chr3	119134833	119134833	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctaatcttattcagtcctCctttccccattatggaccac	4	15	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119134833	G	G	119134833	3	3	11	1	0	0	0	0	1	0	0	0	882	855	30	4	4103	4	ARHGAP31	3	119134833	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5244301	119134833	78887597	449	28616											
C3orf1	51300	broad.mit.edu	37	chr3	119232592	119232592	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattaacatggtttggttctAaattggcacaattttcatta	6	6	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119232592	G	G	119232592	1	3	11	0	1	0	0	0	0	0	0	0	2228	377	13	5		5	C3orf1	3	119232592	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	97759	119232592	78789838	450	28617											
GSK3B	2932	broad.mit.edu	37	chr3	119720926	119720926	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcaatactttcttgatGgcgaccagttctcctgaatc	7	12	2	2	rs141817453	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119720926	A	A	119720926	2	1	11	1	0	0	0	0	0	0	0	1	6890	1335	47	4		4	GSK3B	3	119720926	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	488334	119720926	78301504	451	28618											
LRRC58	116064	broad.mit.edu	37	chr3	120050100	120050100	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaacactagcttcatcttCtgagtcagattcactctggg	8	11	6	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120050100	G	G	120050100	3	3	11	1	0	0	0	0	1	0	0	0	9101	922	32	4	56	4	LRRC58	3	120050100	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	329174	120050100	77972330	452	28619											
HGD	3081	broad.mit.edu	37	chr3	120389380	120389380	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagaatcctatacagccagCtagagggaaaaacatacaag	9	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120389380	T	T	120389380	5	4	11	1	0	0	0	0	0	0	1	0	7151	811	28	4	1205	4	HGD	3	120389380	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	339280	120389380	77633050	453	28620											
HGD	3081	broad.mit.edu	37	chr3	120389445	120389445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtgatacacagaatggCtcaggcagtaccatcaggaa	11	9	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120389445	T	T	120389445	1	4	11	0	1	0	0	0	0	0	0	0	7151	812	28	4		4	HGD	3	120389445	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	65	120389445	77632985	454	28621											
GOLGB1	2804	broad.mit.edu	37	chr3	121386524	121386524	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttgctaatacaagggattCaaagtcttcataaggttgta	9	5	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121386524	T	T	121386524	1	4	11	0	1	0	0	0	0	0	0	0	6629	841	29	4		4	GOLGB1	3	121386524	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	997079	121386524	76635906	455	28622											
PARP9	83666	broad.mit.edu	37	chr3	122264292	122264292	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactcaccactgtaattgttCaaactcagcatcttggacct	5	12	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122264292	G	G	122264292	3	3	11	1	0	0	0	0	1	0	0	0	11560	825	29	4	1161	4	PARP9	3	122264292	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	877768	122264292	75758138	456	28623											
CCDC14	64770	broad.mit.edu	37	chr3	123633788	123633788	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagtgaaaacactaccAtcacagacagtattgccttt	6	10	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123633788	G	G	123633788	2	3	11	1	0	0	0	0	0	0	0	1	2799	214	8	5		5	CCDC14	3	123633788	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	1369496	123633788	74388642	457	28624											
UROC1	131669	broad.mit.edu	37	chr3	126219001	126219001	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacttgcctcctcaggctgCaacaagccatgggtcagcac	10	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126219001	T	T	126219001	1	4	11	0	1	0	0	0	0	0	0	0	17154	725	25	4		4	UROC1	3	126219001	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2585213	126219001	71803429	458	28625											
RAB43	339122	broad.mit.edu	37	chr3	128849008	128849008	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggaggagttccattttcttCcttcgcaccagtgcctcctc	8	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128849008	T	T	128849008	2	4	11	1	0	0	0	0	0	0	0	1	13053	854	30	4		4	RAB43	3	128849008	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2630007	128849008	69173422	459	28626											
IFT122	55764	broad.mit.edu	37	chr3	129225199	129225199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctccatcctgcctcctGtgtgacttcctaaatagcat	7	13	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129225199	T	T	129225199	1	4	11	0	1	0	0	0	0	0	0	0	7625	1392	48	3		3	IFT122	3	129225199	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	376191	129225199	68797231	460	28627											
CPNE4	131034	broad.mit.edu	37	chr3	131418774	131418774	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatggaagatttccctgcTgtgttcccatgcttcagcaa	10	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131418774	G	G	131418774	2	3	11	1	0	0	0	0	0	0	0	1	3846	1567	55	5		5	CPNE4	3	131418774	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	2193575	131418774	66603656	461	28628											
TOPBP1	11073	broad.mit.edu	37	chr3	133368720	133368720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttagctggttaaaacgaactCcacctccactgttaataagt	6	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133368720	A	A	133368720	3	1	11	1	0	0	0	0	1	0	0	0	16493	855	30	3	3491	3	TOPBP1	3	133368720	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1949946	133368720	64653710	462	28629											
EPHB1	2047	broad.mit.edu	37	chr3	134967203	134967203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accggctgcccccacccatgGactgtccagctgctctacac	8	19	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134967203	T	T	134967203	3	4	11	1	0	0	0	0	1	0	0	0	5216	1174	41	3	2596	3	EPHB1	3	134967203	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1598483	134967203	63055227	463	28630											
TXNDC6	347736	broad.mit.edu	37	chr3	138025395	138025395	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatccacaaaaaacaatgcAacctctacacaaggctccat	3	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138025395	T	T	138025395	1	4	11	0	1	0	0	0	0	0	0	0	16926	145	5	5		5	TXNDC6	3	138025395	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	3058192	138025395	59997035	464	28631											
PRR23B	389151	broad.mit.edu	37	chr3	138738769	138738769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgggagcggcgagcgcgcGtggggacctggactccccac	17	15	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138738769	T	T	138738769	3	4	11	1	0	0	0	0	1	0	0	0	12701	1136	40	3	66	3	PRR23B	3	138738769	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	713374	138738769	59283661	465	28632											
RBP2	5948	broad.mit.edu	37	chr3	139181102	139181102	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttcgtctgagtgagacgtActgcaatcttgcgggtggca	13	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139181102	T	T	139181102	3	4	11	1	0	0	0	0	1	0	0	0	13264	391	14	5	312	5	RBP2	3	139181102	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	442333	139181102	58841328	466	28633											
ATR	545	broad.mit.edu	37	chr3	142253921	142253921	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattatatcatattagcataCctgatttttatacaaggttt	4	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142253921	A	A	142253921	5	1	11	1	0	0	0	0	0	0	1	0	1208	521	18	3	4096	3	ATR	3	142253921	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	3072819	142253921	55768509	467	28634											
PLOD2	5352	broad.mit.edu	37	chr3	145806427	145806427	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtaatccagtgtcaacaaTatgtccagaaaccgaggtag	11	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145806427	C	C	145806427	3	2	11	1	0	0	0	0	1	0	0	0	12197	1396	49	5	1373	5	PLOD2	3	145806427	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	3552506	145806427	52216003	468	28635											
ZIC4	84107	broad.mit.edu	37	chr3	147106587	147106587	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctttgatgtagcaggcgcGagatgcggggcgctcagctg	16	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147106587	A	A	147106587	1	1	11	0	1	0	0	0	0	0	0	0	17807	1073	37	4		4	ZIC4	3	147106587	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	1300160	147106587	50915843	469	28636											
FAM194A	131831	broad.mit.edu	37	chr3	150396183	150396183	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatagcaagtaaaaaaattAcaagttcattacctttccac	3	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150396183	T	T	150396183	1	4	11	0	1	0	0	0	0	0	0	0	5573	406	14	5		5	FAM194A	3	150396183	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	3289596	150396183	47626247	470	28637											
MED12L	116931	broad.mit.edu	37	chr3	151148114	151148114	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaggcttgcagcagaccCagcagcagcagcagacggcc	14	14	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151148114	G	G	151148114	3	3	11	1	0	0	0	0	1	0	0	0	9522	595	21	4	6497	4	MED12L	3	151148114	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	751931	151148114	46874316	471	28638											
MME	4311	broad.mit.edu	37	chr3	154884655	154884655	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattttaaaaacttatgCcacaaataatctctaactat	1	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154884655	T	T	154884655	1	4	11	0	1	0	0	0	0	0	0	0	9738	754	26	4		4	MME	3	154884655	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3736541	154884655	43137775	472	28639											
SLC33A1	9197	broad.mit.edu	37	chr3	155571806	155571806	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcagagacgatgcagagcCccgtctgtggggggccgagg	17	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155571806	A	A	155571806	1	1	11	0	1	0	0	0	0	0	0	0	14680	638	22	2		2	SLC33A1	3	155571806	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	687151	155571806	42450624	473	28640											
NMD3	51068	broad.mit.edu	37	chr3	160951236	160951236	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactgagcctcattctaagaGacttaaagttaaactgacta	7	8	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160951236	T	T	160951236	3	4	11	1	0	0	0	0	1	0	0	0	10583	942	33	3	340	3	NMD3	3	160951236	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	5379430	160951236	37071194	474	28641											
SI	6476	broad.mit.edu	37	chr3	164697235	164697235	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatctaaaaaagtaaaataAtaattagttgtttaatcaca	3	3	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164697235	T	T	164697235	1	4	11	0	1	0	0	0	0	0	0	0	14410	116	4	5		5	SI	3	164697235	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	3745999	164697235	33325195	475	28642											
SERPINI2	5276	broad.mit.edu	37	chr3	167183440	167183440	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggccaaattcttcccctGaaaacatgtctttaattttt	6	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167183440	A	A	167183440	3	1	11	1	0	0	0	0	1	0	0	0	14232	1294	45	4	741	4	SERPINI2	3	167183440	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2486205	167183440	30838990	476	28643											
SERPINI1	5274	broad.mit.edu	37	chr3	167508117	167508117	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactctccttgacatttcacCgtgtttgttctacaaataaa	4	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167508117	G	G	167508117	1	3	11	0	1	0	0	0	0	0	0	0	14231	667	23	4		4	SERPINI1	3	167508117	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	324677	167508117	30514313	477	28644											
GOLIM4	27333	broad.mit.edu	37	chr3	167747118	167747118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacaaacatgataaatcCagtgggacaaaattcagagg	9	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167747118	A	A	167747118	1	1	11	0	1	0	0	0	0	0	0	0	6630	609	21	2		2	GOLIM4	3	167747118	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	239001	167747118	30275312	478	28645											
MYNN	55892	broad.mit.edu	37	chr3	169498321	169498321	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgttgatgaaatcttatatGacttatgcaaccaaaacact	5	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169498321	A	A	169498321	1	1	11	0	1	0	0	0	0	0	0	0	10155	1305	45	4		4	MYNN	3	169498321	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1751203	169498321	28524109	479	28646											
TNIK	23043	broad.mit.edu	37	chr3	170784354	170784354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgaaggagataaggaatGgttaacctacccacagacgt	11	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170784354	T	T	170784354	1	4	11	0	1	0	0	0	0	0	0	0	16436	1363	47	2		2	TNIK	3	170784354	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1286033	170784354	27238076	480	28647											
ECT2	1894	broad.mit.edu	37	chr3	172474738	172474738	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggattatttgatatataaAtaatttttatttctgctaac	4	3	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172474738	C	C	172474738	1	2	11	0	1	0	0	0	0	0	0	0	4941	116	4	5		5	ECT2	3	172474738	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1690384	172474738	25547692	481	28648											
SPATA16	83893	broad.mit.edu	37	chr3	172737191	172737191	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattccatgagagaaatggaGagttctgttatgctattacc	9	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172737191	A	A	172737191	1	1	11	0	1	0	0	0	0	0	0	0	15117	957	33	4		4	SPATA16	3	172737191	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	262453	172737191	25285239	482	28649											
YEATS2	55689	broad.mit.edu	37	chr3	183440026	183440026	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactgtcacaggaatcttagGaaataggtttgttttccttt	8	6	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183440026	T	T	183440026	1	4	11	0	1	0	0	0	0	0	0	0	17599	1189	41	3		3	YEATS2	3	183440026	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	10702835	183440026	14582404	483	28650											
POLR2H	5437	broad.mit.edu	37	chr3	184082795	184082795	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgaatctttcaagatggatCtaatcttagatgtaaacatt	7	5	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184082795	G	G	184082795	3	3	11	1	0	0	0	0	1	0	0	0	12316	912	32	4	121	4	POLR2H	3	184082795	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	642769	184082795	13939635	484	28651											
POLR2H	5437	broad.mit.edu	37	chr3	184084660	184084660	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgagctatgctcctgcttCctctgttgagtccctctcct	7	14	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184084660	T	T	184084660	1	4	11	0	1	0	0	0	0	0	0	0	12316	870	30	4		4	POLR2H	3	184084660	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1865	184084660	13937770	485	28652											
IGF2BP2	10644	broad.mit.edu	37	chr3	185407541	185407541	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaggcgggtggatcacgaGgtcaggagatcgagaccatc	16	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185407541	A	A	185407541	1	1	11	0	1	0	0	0	0	0	0	0	7644	1015	35	4		4	IGF2BP2	3	185407541	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1322881	185407541	12614889	486	28653											
RNF212	285498	broad.mit.edu	37	chr4	1073450	1073450	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttttctaatcggagaaggaGagagatcaacttccatcgac	9	9	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1073450	C	C	1073450	3	2	11	1	0	0	0	0	1	0	0	0	13587	942	33	4	414	4	RNF212	4	1073450	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08		1073450	190080826	487	28654											
EVC2	132884	broad.mit.edu	37	chr4	5624341	5624341	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagcgtcatccttcagtctCtgcctcacgctctggacacc	9	16	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5624341	G	G	5624341	3	3	11	1	0	0	0	0	1	0	0	0	5328	912	32	4	1538	4	EVC2	4	5624341	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	4550891	5624341	185529935	488	28655											
PPP2R2C	5522	broad.mit.edu	37	chr4	6349667	6349667	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgaagaggttgcagtggtgCggatggaactcagatgctgt	16	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6349667	T	T	6349667	2	4	11	1	0	0	0	0	0	0	0	1	12487	755	27	4		4	PPP2R2C	4	6349667	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	725326	6349667	184804609	489	28656											
CLNK	116449	broad.mit.edu	37	chr4	10502976	10502976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttctcataaaacacagcCaaaacatagggctcttcctt	5	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10502976	A	A	10502976	3	1	11	1	0	0	0	0	1	0	0	0	3579	593	21	2	250	2	CLNK	4	10502976	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	4153309	10502976	180651300	490	28657											
KCNIP4	80333	broad.mit.edu	37	chr4	21305369	21305369	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgcctcttacattcacCtaagacattttcattgcaaa	5	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21305369	T	T	21305369	1	4	11	0	1	0	0	0	0	0	0	0	8112	696	24	4		4	KCNIP4	4	21305369	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	10802393	21305369	169848907	491	28658											
KCNIP4	80333	broad.mit.edu	37	chr4	21698890	21698890	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatcacaacaaagaaatagCctttcctattccatttcaac	2	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21698890	G	G	21698890	1	3	11	0	1	0	0	0	0	0	0	0	8112	754	26	4		4	KCNIP4	4	21698890	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	393521	21698890	169455386	492	28659											
GPR125	166647	broad.mit.edu	37	chr4	22390301	22390301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcaaagtaaggctggccCccaagagctgagaatgaaaa	12	8	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22390301	A	A	22390301	3	1	11	1	0	0	0	0	1	0	0	0	6704	623	22	2	976	2	GPR125	4	22390301	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	691411	22390301	168763975	493	28660											
SLC34A2	10568	broad.mit.edu	37	chr4	25664259	25664259	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtcgctcgtttgtctgcaGatcggcctttgtgaggaccc	13	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25664259	T	T	25664259	1	4	11	0	1	0	0	0	0	0	0	0	14682	957	33	3		3	SLC34A2	4	25664259	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3273958	25664259	165490017	494	28661											
GABRG1	2565	broad.mit.edu	37	chr4	46125848	46125848	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttcccaaatgcagggtcAgtaacaagaagaccaacctc	8	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46125848	G	G	46125848	3	3	11	1	0	0	0	0	1	0	0	0	6231	188	7	5	1350	5	GABRG1	4	46125848	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	20461589	46125848	145028428	495	28662											
GABRA2	2555	broad.mit.edu	37	chr4	46314713	46314713	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttccatttttgtcgaaaGaaaacatcaattgtatattc	4	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46314713	T	T	46314713	3	4	11	1	0	0	0	0	1	0	0	0	6221	933	33	3	1103	3	GABRA2	4	46314713	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	188865	46314713	144839563	496	28663											
CORIN	10699	broad.mit.edu	37	chr4	47765383	47765383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttatcactgaataatctgGgttccgaaatacctgtcatc	6	10	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47765383	T	T	47765383	1	4	11	0	1	0	0	0	0	0	0	0	3784	1247	43	2		2	CORIN	4	47765383	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1450670	47765383	143388893	497	28664											
CNGA1	1259	broad.mit.edu	37	chr4	47939841	47939841	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taccagcagtccttgttctaGgtaacctaaaatagaaaata	6	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47939841	C	C	47939841	3	2	11	1	0	0	0	0	1	0	0	0	3628	991	35	4	1406	4	CNGA1	4	47939841	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	174458	47939841	143214435	498	28665											
TXK	7294	broad.mit.edu	37	chr4	48097133	48097133	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgccagggattatttctAtagtaaccaaaatcacaagt	7	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48097133	G	G	48097133	1	3	11	0	1	0	0	0	0	0	0	0	16912	464	16	5		5	TXK	4	48097133	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	157292	48097133	143057143	499	28666											
CWH43	80157	broad.mit.edu	37	chr4	49018699	49018699	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttactgggcttctgggctGcttagtccattcaccttatc	9	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49018699	T	T	49018699	1	4	11	0	1	0	0	0	0	0	0	0	4106	1334	46	3		3	CWH43	4	49018699	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	921566	49018699	142135577	500	28667											
SPATA18	132671	broad.mit.edu	37	chr4	52945942	52945942	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccatgaatgtcaatcccaaGatttcattccctcctgtcgt	6	13	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52945942	T	T	52945942	3	4	11	1	0	0	0	0	1	0	0	0	15119	933	33	3	1246	3	SPATA18	4	52945942	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3927243	52945942	138208334	501	28668											
LNX1	84708	broad.mit.edu	37	chr4	54347885	54347885	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgacctgccctagaggcctcAccttgggagtgttgctcctc	11	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54347885	G	G	54347885	5	3	11	1	0	0	0	0	0	0	1	0	8939	173	6	5	719	5	LNX1	4	54347885	Splice_Site	SNP	A	TCGA-05-4398-01A-01D-1265-08	1401943	54347885	136806391	502	28669											
KIAA1211	57482	broad.mit.edu	37	chr4	57182816	57182817	+	Frame_Shift_Ins	INS	-	A	A													acctctgcctgccactcagcINSaagagaaaccttctcaaaca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57182817	A	A	57182816	7	5	11	1	0	1	1	0	0	0	0	0	8285	711	25	0	3166	0	KIAA1211	4	57182816	Frame_Shift_Ins	INS	-	TCGA-05-4398-01A-01D-1265-08	2834931	57182816	133971460	503	28670											
CENPC1	1060	broad.mit.edu	37	chr4	68374577	68374577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccaagtctgcctcatcaCtttccaatggctcactcagc	6	15	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68374577	A	A	68374577	3	1	11	1	0	0	0	0	1	0	0	0	3259	565	20	3	1012	3	CENPC1	4	68374577	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	11191761	68374577	122779699	504	28671											
UBA6	55236	broad.mit.edu	37	chr4	68488607	68488607	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacataaagcattttgactcCctgtaccaccattgttggct	6	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68488607	G	G	68488607	3	3	11	1	0	0	0	0	1	0	0	0	16958	632	22	4	201	4	UBA6	4	68488607	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	114030	68488607	122665669	505	28672											
UGT2B10	7365	broad.mit.edu	37	chr4	69875592	69875592	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactattaacactctaatacGctgttactaatatatccagt	3	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69875592	A	A	69875592	1	1	11	0	1	0	0	0	0	0	0	0	17082	1102	38	4		4	UGT2B10	4	69875592	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1386985	69875592	121278684	506	28673											
SULT1E1	6783	broad.mit.edu	37	chr4	70709782	70709783	+	Intron	DNP	GG	TT	TT													tgctgaagaaaacttaagctGggttcataggcattaaaata							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	70709783	TT	TT	70709782	1	4	11	0	1	0	0	0	0	0	0	0	15498	1363	47	2		2	SULT1E1	4	70709782	Intron	DNP	GG	TCGA-05-4398-01A-01D-1265-08	834190	70709782	120444494	507	28674											
SMR3A	26952	broad.mit.edu	37	chr4	71232741	71232741	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcaacaggtgccaccacCcacaaaagacaacactaccc	5	17	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71232741	A	A	71232741	1	1	11	0	1	0	0	0	0	0	0	0	14925	638	22	2		2	SMR3A	4	71232741	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	522959	71232741	119921535	508	28675											
SMR3B	10879	broad.mit.edu	37	chr4	71250145	71250145	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacattatatccaagtgtTgagacattttaaatagtact	5	5	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71250145	G	G	71250145	1	3	11	0	1	0	0	0	0	0	0	0	14926	1827	63	5		5	SMR3B	4	71250145	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	17404	71250145	119904131	509	28676											
CXCL1	2919	broad.mit.edu	37	chr4	74735479	74735479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtgaacgtgaagtcccCcggaccccactgcgcccaaa	10	15	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74735479	A	A	74735479	3	1	11	1	0	0	0	0	1	0	0	0	4110	623	22	2	200	2	CXCL1	4	74735479	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3485334	74735479	116418797	510	28677											
CXCL2	2920	broad.mit.edu	37	chr4	74963511	74963511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatgagaaaatgggtgccCtgagtaggtgctcaggaaag	15	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74963511	A	A	74963511	1	1	11	0	1	0	0	0	0	0	0	0	4118	696	24	2		2	CXCL2	4	74963511	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	228032	74963511	116190765	511	28678											
EPGN	255324	broad.mit.edu	37	chr4	75178861	75178861	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctattaagtggttttcttgtTattttttactgctatataag	6	4	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75178861	A	A	75178861	2	1	11	1	0	0	0	0	0	0	0	1	5206	1741	61	5		5	EPGN	4	75178861	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	215350	75178861	115975415	512	28679											
ANKRD56	345079	broad.mit.edu	37	chr4	77817832	77817832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcatccagatcttggaGggacagctgacaacgaatgc	11	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77817832	T	T	77817832	3	4	11	1	0	0	0	0	1	0	0	0	682	1000	35	2	1214	2	ANKRD56	4	77817832	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2638971	77817832	113336444	513	28680											
FRAS1	80144	broad.mit.edu	37	chr4	79393416	79393416	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtctatgagataacgaCgggccctaagcatggctttg	12	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79393416	G	G	79393416	3	3	11	1	0	0	0	0	1	0	0	0	6102	536	19	4	7735	4	FRAS1	4	79393416	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1575584	79393416	111760860	514	28681											
FRAS1	80144	broad.mit.edu	37	chr4	79403484	79403484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacctttgccctagtcaaGgtaaatgggtgttagatggt	13	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79403484	T	T	79403484	1	4	11	0	1	0	0	0	0	0	0	0	6102	1015	35	2		2	FRAS1	4	79403484	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	10068	79403484	111750792	515	28682											
FRAS1	80144	broad.mit.edu	37	chr4	79403838	79403838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagcatttgcacttttacAtagcagagtatgtagatgtg	11	5	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79403838	G	G	79403838	1	3	11	0	1	0	0	0	0	0	0	0	6102	232	8	5		5	FRAS1	4	79403838	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	354	79403838	111750438	516	28683											
RASGEF1B	153020	broad.mit.edu	37	chr4	82369249	82369249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatgagtcagctgctgggCcaacgtgtaagggtcgttgc	14	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82369249	A	A	82369249	3	1	11	1	0	0	0	0	1	0	0	0	13178	739	26	3	833	3	RASGEF1B	4	82369249	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2965411	82369249	108785027	517	28684											
PLAC8	51316	broad.mit.edu	37	chr4	84028935	84028935	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctcggtatcaaataagggGgttctttccccacacactta	7	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84028935	C	C	84028935	1	2	11	0	1	0	0	0	0	0	0	0	12110	1247	43	4		4	PLAC8	4	84028935	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1659686	84028935	107125341	518	28685											
WDFY3	23001	broad.mit.edu	37	chr4	85639672	85639672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaccaaaaagaaggagccCctcactggtatctaggccct	8	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85639672	A	A	85639672	3	1	11	1	0	0	0	0	1	0	0	0	17397	623	22	2	3007	2	WDFY3	4	85639672	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1610737	85639672	105514604	519	28686											
WDFY3	23001	broad.mit.edu	37	chr4	85678286	85678286	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctccctgaccgtcgatctCccaccagcacttctgcccac	5	20	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85678286	A	A	85678286	2	1	11	1	0	0	0	0	0	0	0	1	17397	842	30	3		3	WDFY3	4	85678286	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	38614	85678286	105475990	520	28687											
AFF1	4299	broad.mit.edu	37	chr4	88048119	88048119	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttaagagggatggtactTttaggacagtggtcttaaat	11	3	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88048119	C	C	88048119	1	2	11	0	1	0	0	0	0	0	0	0	356	1856	64	5		5	AFF1	4	88048119	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2369833	88048119	103106157	521	28688											
PDHA2	5161	broad.mit.edu	37	chr4	96761513	96761513	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgatgctgactgttcgccGcatggaattgaaggcagatc	13	8	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761513	A	A	96761513	3	1	11	1	0	0	0	0	1	0	0	0	11759	1087	38	4	214	4	PDHA2	4	96761513	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	8713394	96761513	94392763	522	28689											
CENPE	1062	broad.mit.edu	37	chr4	104061898	104061898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttagtcaccagacacaaCgctgcagtgaacactgtatt	8	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104061898	A	A	104061898	1	1	11	0	1	0	0	0	0	0	0	0	3260	551	19	3		3	CENPE	4	104061898	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	7300385	104061898	87092378	523	28690											
NPNT	255743	broad.mit.edu	37	chr4	106890090	106890090	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggcgtggtcacactggGgagattggattagatgatgt	15	4	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106890090	T	T	106890090	2	4	11	1	0	0	0	0	0	0	0	1	10685	1219	43	2		2	NPNT	4	106890090	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2828192	106890090	84264186	524	28691											
CYP2U1	113612	broad.mit.edu	37	chr4	108866742	108866742	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcctgctgtatatgtcGctgaaccccgatgtacaagg	12	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108866742	T	T	108866742	2	4	11	1	0	0	0	0	0	0	0	1	4208	1074	38	3		3	CYP2U1	4	108866742	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1976652	108866742	82287534	525	28692											
RRH	10692	broad.mit.edu	37	chr4	110756484	110756484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgtttcttgggagggtGtttagaatggtagagtcttt	13	2	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110756484	T	T	110756484	1	4	11	0	1	0	0	0	0	0	0	0	13791	1392	48	3		3	RRH	4	110756484	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1889742	110756484	80397792	526	28693											
ALPK1	80216	broad.mit.edu	37	chr4	113346929	113346929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaatcatgtaaaacttgcAtttctcaaggctcatttaca	4	9	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113346929	G	G	113346929	1	3	11	0	1	0	0	0	0	0	0	0	544	232	8	5		5	ALPK1	4	113346929	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2590445	113346929	77807347	527	28694											
ALPK1	80216	broad.mit.edu	37	chr4	113353610	113353610	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaaagatgaggaaagagatCcttgaggctcgcaccttgca	13	8	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113353610	G	G	113353610	3	3	11	1	0	0	0	0	1	0	0	0	544	845	30	4	2941	4	ALPK1	4	113353610	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	6681	113353610	77800666	528	28695											
C4orf21	55345	broad.mit.edu	37	chr4	113541196	113541196	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccagagggctgacatccaaGagatcggccagaggatataa	13	9	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113541196	A	A	113541196	3	1	11	1	0	0	0	0	1	0	0	0	2277	942	33	4	6097	4	C4orf21	4	113541196	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	187586	113541196	77613080	529	28696											
ADAD1	132612	broad.mit.edu	37	chr4	123317361	123317361	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaataataagacagctctaGgaggagcacaatgttcttga	10	6	2	3	rs116315422	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123317361	C	C	123317361	1	2	11	0	1	0	0	0	0	0	0	0	231	1015	35	4		4	ADAD1	4	123317361	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	9776165	123317361	67836915	530	28697											
SPRY1	10252	broad.mit.edu	37	chr4	124322828	124322828	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggatagccgtcagagattaGactatgagagagagattcag	13	5	2	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124322828	A	A	124322828	3	1	11	1	0	0	0	0	1	0	0	0	15223	942	33	4	84	4	SPRY1	4	124322828	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1005467	124322828	66831448	531	28698											
PLK4	10733	broad.mit.edu	37	chr4	128816214	128816214	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcagcacaacttttgaaatCtgtttttgtgaaaaatgttg	7	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128816214	G	G	128816214	3	3	11	1	0	0	0	0	1	0	0	0	12193	913	32	4	2723	4	PLK4	4	128816214	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	4493386	128816214	62338062	532	28699											
C4orf33	132321	broad.mit.edu	37	chr4	130030422	130030422	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgaagaaaataacattcAtgtttttcaaacactcatga	5	6	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130030422	G	G	130030422	1	3	11	0	1	0	0	0	0	0	0	0	2286	232	8	5		5	C4orf33	4	130030422	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1214208	130030422	61123854	533	28700											
PCDH10	57575	broad.mit.edu	37	chr4	134071803	134071803	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaacagctacttctccctgGacgtgcagacccagggggat	11	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134071803	C	C	134071803	3	2	11	1	0	0	0	0	1	0	0	0	11601	1174	41	4	510	4	PCDH10	4	134071803	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4041381	134071803	57082473	534	28701											
INPP4B	8821	broad.mit.edu	37	chr4	143129581	143129581	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaataatttatgataccttTcaagtgagggctgtgtacct	9	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143129581	A	A	143129581	4	1	11	1	0	0	0	0	0	1	0	0	7823	1792	62	5	1757	5	INPP4B	4	143129581	Nonsense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	9057778	143129581	48024695	535	28702											
INPP4B	8821	broad.mit.edu	37	chr4	143191873	143191873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccatcctcaatctccccCatcttcacgacactgacttc	2	20	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143191873	A	A	143191873	3	1	11	1	0	0	0	0	1	0	0	0	7823	594	21	2	2284	2	INPP4B	4	143191873	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	62292	143191873	47962403	536	28703											
OTUD4	54726	broad.mit.edu	37	chr4	146067520	146067520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctcttctggggaaaggcCgaaatagttagattctcgac	12	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146067520	A	A	146067520	3	1	11	1	0	0	0	0	1	0	0	0	11408	652	23	1	2055	1	OTUD4	4	146067520	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2875647	146067520	45086756	537	28704											
FBXW7	55294	broad.mit.edu	37	chr4	153244298	153244298	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcactctgatgcttgttgGgacctagacaaaaaccaaaa	8	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153244298	C	C	153244298	3	2	11	1	0	0	0	0	1	0	0	0	5826	1232	43	4	268	4	FBXW7	4	153244298	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	7176778	153244298	37909978	538	28705											
FHDC1	85462	broad.mit.edu	37	chr4	153896824	153896824	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaaccgactccagacccaGaggcggggacccggaggaag	17	12	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153896824	C	C	153896824	3	2	11	1	0	0	0	0	1	0	0	0	5933	942	33	4	2423	4	FHDC1	4	153896824	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	652526	153896824	37257452	539	28706											
TLR2	7097	broad.mit.edu	37	chr4	154624696	154624696	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatgaagcagcatattttaCtgctggagatttttgtagat	9	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154624696	T	T	154624696	2	4	11	1	0	0	0	0	0	0	0	1	16074	564	20	4		4	TLR2	4	154624696	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	727872	154624696	36529580	540	28707											
DCHS2	54798	broad.mit.edu	37	chr4	155278470	155278470	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttctacctctggactaTagagtcctaattagggaaaa	8	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155278470	C	C	155278470	3	2	11	1	0	0	0	0	1	0	0	0	4321	1406	49	5	8225	5	DCHS2	4	155278470	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	653774	155278470	35875806	541	28708											
NPY2R	4887	broad.mit.edu	37	chr4	156135639	156135639	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccctgctggcaagtccccTggccatcttccgggagtatt	11	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156135639	A	A	156135639	3	1	11	1	0	0	0	0	1	0	0	0	10704	1580	55	5	550	5	NPY2R	4	156135639	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	857169	156135639	35018637	542	28709											
GRIA2	2891	broad.mit.edu	37	chr4	158234056	158234057	+	Intron	DNP	CC	AG	AG													ctttctgttttctaatgatgCcagatatagaatatgcatgc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	158234057	AG	AG	158234056	1	1	11	0	1	0	0	0	0	0	0	0	6834	754	26	3		3	GRIA2	4	158234056	Intron	DNP	CC	TCGA-05-4398-01A-01D-1265-08	2098417	158234056	32920220	543	28710											
GRIA2	2891	broad.mit.edu	37	chr4	158257770	158257770	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatttagcccctacgagtGgcacactgaggagtttgaag	12	9	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158257770	A	A	158257770	4	1	11	1	0	0	0	0	0	1	0	0	6834	1357	47	4	1757	4	GRIA2	4	158257770	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	23714	158257770	32896506	544	28711											
PPID	5481	broad.mit.edu	37	chr4	159632048	159632048	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatcaaagtattaagcttaTatgccagatttcaattcatt	4	6	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159632048	A	A	159632048	1	1	11	0	1	0	0	0	0	0	0	0	12422	1421	49	5		5	PPID	4	159632048	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1374278	159632048	31522228	545	28712											
FSTL5	56884	broad.mit.edu	37	chr4	162459330	162459330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacatacgggtctttctagCagagtcttccacaaaaagag	8	9	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162459330	A	A	162459330	3	1	11	1	0	0	0	0	1	0	0	0	6140	710	25	3	1271	3	FSTL5	4	162459330	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2827282	162459330	28694946	546	28713											
PALLD	23022	broad.mit.edu	37	chr4	169632897	169632897	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgagttaggcctgagcaGggcagcccttcaaatgcaat	11	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169632897	A	A	169632897	3	1	11	1	0	0	0	0	1	0	0	0	11501	1000	35	4	1821	4	PALLD	4	169632897	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	7173567	169632897	21521379	547	28714											
GALNTL6	442117	broad.mit.edu	37	chr4	172735944	172735944	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcggggactcgagaaagccGgtgtgggatcgccttgggtt	18	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172735944	A	A	172735944	1	1	11	0	1	0	0	0	0	0	0	0	6287	1131	39	4		4	GALNTL6	4	172735944	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3103047	172735944	18418332	548	28715											
GALNTL6	442117	broad.mit.edu	37	chr4	173301491	173301491	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtccaagtttaaaagtccCtccctcacagtgggaatccc	7	13	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173301491	T	T	173301491	1	4	11	0	1	0	0	0	0	0	0	0	6287	696	24	4		4	GALNTL6	4	173301491	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	565547	173301491	17852785	549	28716											
GALNTL6	442117	broad.mit.edu	37	chr4	173803979	173803979	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtctctttgctgtggatcGgaaatggttttgggaattgg	15	4	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173803979	A	A	173803979	3	1	11	1	0	0	0	0	1	0	0	0	6287	1116	39	4	988	4	GALNTL6	4	173803979	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	502488	173803979	17350297	550	28717											
GPM6A	2823	broad.mit.edu	37	chr4	176622961	176622961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattcatatttttgttaacCtaatttaattttttttttca	1	4	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176622961	A	A	176622961	1	1	11	0	1	0	0	0	0	0	0	0	6680	696	24	2		2	GPM6A	4	176622961	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2818982	176622961	14531315	551	28718											
SORBS2	8470	broad.mit.edu	37	chr4	186573905	186573905	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaatgaagagagcgtccaaTggttacaaactggcttccaa	10	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186573905	C	C	186573905	1	2	11	0	1	0	0	0	0	0	0	0	15042	1479	51	5		5	SORBS2	4	186573905	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	9950944	186573905	4580371	552	28719											
FAT1	2195	broad.mit.edu	37	chr4	187540161	187540161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttacaatatggtaagtaaCgtgaccataaataccagaat	6	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187540161	A	A	187540161	3	1	11	1	0	0	0	0	1	0	0	0	5746	536	19	3	6259	3	FAT1	4	187540161	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	966256	187540161	3614115	553	28720											
PLEKHG4B	153478	broad.mit.edu	37	chr5	155260	155260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgtctacacaaccacgcCgtggtgcatctgagaatgcc	10	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155260	A	A	155260	1	1	11	0	1	0	0	0	0	0	0	0	12167	667	23	1		1	PLEKHG4B	5	155260	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08		155260	180760000	554	28721											
SLC9A3	6550	broad.mit.edu	37	chr5	476783	476783	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagacagcgctgacattttCtctcctgcgtggggaccagc	12	13	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	476783	T	T	476783	3	4	11	1	0	0	0	0	1	0	0	0	14827	922	32	4	763	4	SLC9A3	5	476783	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	321523	476783	180438477	555	28722											
SLC9A3	6550	broad.mit.edu	37	chr5	484838	484838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggacgccctttgtggcCgtgccggccttccgggccct	14	15	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	484838	A	A	484838	1	1	11	0	1	0	0	0	0	0	0	0	14827	667	23	1		1	SLC9A3	5	484838	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	8055	484838	180430422	556	28723											
CEP72	55722	broad.mit.edu	37	chr5	644705	644705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggggtggaggctgcctcGgccggagtttatggcacaca	17	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	644705	T	T	644705	1	4	11	0	1	0	0	0	0	0	0	0	3290	1131	39	1		1	CEP72	5	644705	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	159867	644705	180270555	557	28724											
NKD2	85409	broad.mit.edu	37	chr5	1037913	1037913	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcacactctgacctgtgTccgcagggtcccctcctgtg	10	17	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1037913	A	A	1037913	1	1	11	0	1	0	0	0	0	0	0	0	10537	1682	58	5		5	NKD2	5	1037913	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	393208	1037913	179877347	558	28725											
LPCAT1	79888	broad.mit.edu	37	chr5	1490065	1490065	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgctgcatggcgcccagTggggcgggagactccagatg	18	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1490065	A	A	1490065	1	1	11	0	1	0	0	0	0	0	0	0	8997	1711	59	5		5	LPCAT1	5	1490065	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	452152	1490065	179425195	559	28726											
MED10	84246	broad.mit.edu	37	chr5	6378684	6378684	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctgcttccgtccggaCagatacgacttccgtttcct	8	15	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6378684	G	G	6378684	1	3	11	0	1	0	0	0	0	0	0	0	9519	493	17	4		4	MED10	5	6378684	5'Flank	SNP	C	TCGA-05-4398-01A-01D-1265-08	4888619	6378684	174536576	560	28727											
NSUN2	54888	broad.mit.edu	37	chr5	6620303	6620303	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctggagcctgggtatgctgGaggcatcatggttgaccacc	14	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6620303	A	A	6620303	3	1	11	1	0	0	0	0	1	0	0	0	10773	1174	41	4	1624	4	NSUN2	5	6620303	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	241619	6620303	174294957	561	28728											
ADCY2	108	broad.mit.edu	37	chr5	7626256	7626256	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagaaacagttaccctattGagcagctctttctgtctctt	7	10	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7626256	C	C	7626256	1	2	11	0	1	0	0	0	0	0	0	0	294	1305	45	4		4	ADCY2	5	7626256	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1005953	7626256	173289004	562	28729											
ADCY2	108	broad.mit.edu	37	chr5	7690964	7690964	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacgtgaggtacgacgctaTgcttgctccttggctggtct	12	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7690964	C	C	7690964	1	2	11	0	1	0	0	0	0	0	0	0	294	1479	51	5		5	ADCY2	5	7690964	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	64708	7690964	173224296	563	28730											
SEMA5A	9037	broad.mit.edu	37	chr5	9337790	9337790	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgtaaaatgaagtccaaAaatatctgtggtggcaaaat	9	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9337790	C	C	9337790	1	2	11	0	1	0	0	0	0	0	0	0	14150	29	1	5		5	SEMA5A	5	9337790	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1646826	9337790	171577470	564	28731											
TAS2R1	50834	broad.mit.edu	37	chr5	9629177	9629177	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggctgctttgtctggctGagggaagtgtggcaggcatg	17	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9629177	T	T	9629177	1	4	11	0	1	0	0	0	0	0	0	0	15684	1305	45	3		3	TAS2R1	5	9629177	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	291387	9629177	171286083	565	28732											
CTNND2	1501	broad.mit.edu	37	chr5	11199641	11199641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgccaccacagtttttcaGggcaattttgttatcatcgt	8	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11199641	T	T	11199641	3	4	11	1	0	0	0	0	1	0	0	0	4054	991	35	2	1831	2	CTNND2	5	11199641	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1570464	11199641	169715619	566	28733											
CTNND2	1501	broad.mit.edu	37	chr5	11236895	11236895	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaactggtgctgcaacatctGaatcacttccggcagttccg	9	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11236895	T	T	11236895	3	4	11	1	0	0	0	0	1	0	0	0	4054	1299	45	3	2060	3	CTNND2	5	11236895	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	37254	11236895	169678365	567	28734											
TRIO	7204	broad.mit.edu	37	chr5	14369665	14369665	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcgggacagtgcacccatCagaggcttcctgcctgccag	12	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14369665	G	G	14369665	1	3	11	0	1	0	0	0	0	0	0	0	16677	841	29	4		4	TRIO	5	14369665	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3132770	14369665	166545595	568	28735											
FBXL7	23194	broad.mit.edu	37	chr5	15500716	15500716	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgggcgggctttcctcgGgccgagcgcgcaggacgtgc	18	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15500716	T	T	15500716	1	4	11	0	1	0	0	0	0	0	0	0	5781	1247	43	2		2	FBXL7	5	15500716	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	1131051	15500716	165414544	569	28736											
MARCH11	441061	broad.mit.edu	37	chr5	16091000	16091000	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggtcatggtcttacctAtgcacactagatccataaaa	7	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16091000	G	G	16091000	3	3	11	1	0	0	0	0	1	0	0	0	9392	449	16	5	332	5	MARCH11	5	16091000	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	590284	16091000	164824260	570	28737											
CDH18	1016	broad.mit.edu	37	chr5	19838966	19838966	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgatgatggacttcggtttCaccttcaatgtgtttggttt	10	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19838966	T	T	19838966	3	4	11	1	0	0	0	0	1	0	0	0	3133	835	29	4	2286	4	CDH18	5	19838966	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3747966	19838966	161076294	571	28738											
CDH12	1010	broad.mit.edu	37	chr5	22078828	22078828	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtaataaaaactccaacaCttaacgtagaattgtggaat	7	6	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22078828	G	G	22078828	1	3	11	0	1	0	0	0	0	0	0	0	3128	580	20	4		4	CDH12	5	22078828	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	2239862	22078828	158836432	572	28739											
PRDM9	56979	broad.mit.edu	37	chr5	23527537	23527537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccctatgtctgcagggaGtgtgggcggggctttagaga	17	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23527537	T	T	23527537	3	4	11	1	0	0	0	0	1	0	0	0	12569	1020	36	3	2378	3	PRDM9	5	23527537	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1448709	23527537	157387723	573	28740											
CDH10	1008	broad.mit.edu	37	chr5	24488132	24488132	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggtgccgatatcaaaGgcctgggtgtcctcctctcc	11	14	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24488132	T	T	24488132	2	4	11	1	0	0	0	0	0	0	0	1	3126	987	35	2		2	CDH10	5	24488132	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	960595	24488132	156427128	574	28741											
CDH10	1008	broad.mit.edu	37	chr5	24537495	24537495	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaaatgaacttacctacaaCagacatttcgggaacactag	7	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24537495	G	G	24537495	3	3	11	1	0	0	0	0	1	0	0	0	3126	478	17	4	1886	4	CDH10	5	24537495	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	49363	24537495	156377765	575	28742											
CDH9	1007	broad.mit.edu	37	chr5	26885662	26885662	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttattcagtgcaccatgCtcagacagtgagggagagat	12	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26885662	T	T	26885662	1	4	11	0	1	0	0	0	0	0	0	0	3147	812	28	4		4	CDH9	5	26885662	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2348167	26885662	154029598	576	28743											
CDH9	1007	broad.mit.edu	37	chr5	26885712	26885712	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaggatcattcagagggGcagagcttactaagcagtat	11	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26885712	C	C	26885712	1	2	11	0	1	0	0	0	0	0	0	0	3147	1218	42	4		4	CDH9	5	26885712	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	50	26885712	154029548	577	28744											
C5orf23	79614	broad.mit.edu	37	chr5	32789467	32789467	+	5'UTR	DEL	G	-	-													caatctggaaagaattttttGtatagagtccatctctccct							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32789467	-	-	32789467	6	5	11	0	1	1	0	1	0	0	0	0	2309	1392	48	0		0	C5orf23	5	32789467	5'UTR	DEL	G	TCGA-05-4398-01A-01D-1265-08	5903755	32789467	148125793	578	28745											
ADAMTS12	81792	broad.mit.edu	37	chr5	33535001	33535001	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggaggtctgggtttgtgatCacatagacattggtcttggt	14	5	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33535001	A	A	33535001	3	1	11	1	0	0	0	0	1	0	0	0	257	826	29	3	249	3	ADAMTS12	5	33535001	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	745534	33535001	147380259	579	28746											
ADAMTS12	81792	broad.mit.edu	37	chr5	33614501	33614501	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaaaaggcaagagaggggTcatgtcaaactgtcatgact	12	7	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33614501	C	C	33614501	1	2	11	0	1	0	0	0	0	0	0	0	257	1682	58	5		5	ADAMTS12	5	33614501	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	79500	33614501	147300759	580	28747											
SPEF2	79925	broad.mit.edu	37	chr5	35753652	35753652	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaagagaggcaaaggatTttagttttattgcacctagg	10	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35753652	A	A	35753652	1	1	11	0	1	0	0	0	0	0	0	0	15153	1856	64	5		5	SPEF2	5	35753652	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2139151	35753652	145161608	581	28748											
SPEF2	79925	broad.mit.edu	37	chr5	35795874	35795874	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgaaccccttccatttAataggcaggagcatcttata	6	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35795874	T	T	35795874	3	4	11	1	0	0	0	0	1	0	0	0	15153	362	13	5	4958	5	SPEF2	5	35795874	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	42222	35795874	145119386	582	28749											
LIFR	3977	broad.mit.edu	37	chr5	38523600	38523600	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggtgtggaaaaactgaaCccctgtcgttccactttagg	11	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38523600	T	T	38523600	3	4	11	1	0	0	0	0	1	0	0	0	8852	507	18	4	2875	4	LIFR	5	38523600	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2727726	38523600	142391660	583	28750											
RICTOR	253260	broad.mit.edu	37	chr5	38982069	38982069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttattcgacttaattggCaatcgatcacatttttcaag	5	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38982069	A	A	38982069	3	1	11	1	0	0	0	0	1	0	0	0	13467	710	25	3	4597	3	RICTOR	5	38982069	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	458469	38982069	141933191	584	28751											
FYB	2533	broad.mit.edu	37	chr5	39169720	39169720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgggaggccgaggcggGtggattacctgaggtcagga	18	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39169720	T	T	39169720	1	4	11	0	1	0	0	0	0	0	0	0	6184	1276	44	3		3	FYB	5	39169720	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	187651	39169720	141745540	585	28752											
PTGER4	5734	broad.mit.edu	37	chr5	40692538	40692538	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttataaaatcctgtgcaataGacacatacatgtcacattta	4	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40692538	C	C	40692538	1	2	11	0	1	0	0	0	0	0	0	0	12851	957	33	4		4	PTGER4	5	40692538	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	1522818	40692538	140222722	586	28753											
GHR	2690	broad.mit.edu	37	chr5	42718755	42718755	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctaggggtgaaggatggCgactctggacgtaccagctg	15	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42718755	A	A	42718755	2	1	11	1	0	0	0	0	0	0	0	1	6435	755	27	3		3	GHR	5	42718755	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2026217	42718755	138196505	587	28754											
MRPS30	10884	broad.mit.edu	37	chr5	44815242	44815242	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaatgatgatgttctacttCagatagttcactttctactg	6	7	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44815242	T	T	44815242	4	4	11	1	0	0	0	0	0	1	0	0	9934	827	29	4	1276	4	MRPS30	5	44815242	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2096487	44815242	136100018	588	28755											
ISL1	3670	broad.mit.edu	37	chr5	50679571	50679571	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtggggctcggtgtgctGttcttgtgcggggttctctc	16	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50679571	A	A	50679571	1	1	11	0	1	0	0	0	0	0	0	0	7926	1392	48	4		4	ISL1	5	50679571	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	5864329	50679571	130235689	589	28756											
ANKRD55	79722	broad.mit.edu	37	chr5	55455694	55455694	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gattaatctcgctgatgttcGactgttgcaacaggaccgtg	11	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55455694	T	T	55455694	4	4	11	1	0	0	0	0	0	1	0	0	681	1059	37	3	1423	3	ANKRD55	5	55455694	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4776123	55455694	125459566	590	28757											
FAM169A	26049	broad.mit.edu	37	chr5	74130338	74130338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctatgacacaggaatgGgatctcatttctctccattt	7	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74130338	T	T	74130338	3	4	11	1	0	0	0	0	1	0	0	0	5532	1232	43	2	1645	2	FAM169A	5	74130338	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	18674644	74130338	106784922	591	28758											
IQGAP2	10788	broad.mit.edu	37	chr5	75885525	75885525	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaataggtggtattctggcCaatgaactgtccgtggatga	12	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75885525	G	G	75885525	2	3	11	1	0	0	0	0	0	0	0	1	7885	581	21	4		4	IQGAP2	5	75885525	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1755187	75885525	105029735	592	28759											
VCAN	1462	broad.mit.edu	37	chr5	82815951	82815966	+	Frame_Shift_Del	DEL	TAATTATGCCTGATAA	-	-													atccacaactgtttccccttTaattatgcctgataataatg					rs138840154		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82815966	-	-	82815951	7	5	11	1	0	1	0	1	0	0	0	0	17265	1764	61	0	1848	0	VCAN	5	82815951	Frame_Shift_Del	DEL	TAATTATGCCTGATAA	TCGA-05-4398-01A-01D-1265-08	6930426	82815951	98099309	593	28760											
GPR98	84059	broad.mit.edu	37	chr5	89933775	89933775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctagacaggtaataaccCatttaggtaatgtttagtat	7	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89933775	A	A	89933775	1	1	11	0	1	0	0	0	0	0	0	0	6787	609	21	2		2	GPR98	5	89933775	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	7117824	89933775	90981485	594	28761											
CAST	831	broad.mit.edu	37	chr5	96064929	96064929	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaggtaaatgattatcatCaggacttaattataaggcaa	8	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96064929	T	T	96064929	1	4	11	0	1	0	0	0	0	0	0	0	2710	841	29	4		4	CAST	5	96064929	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6131154	96064929	84850331	595	28762											
FER	2241	broad.mit.edu	37	chr5	108387304	108387304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcgccattaaccagcttGtacccaggaagagacatagg	10	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108387304	T	T	108387304	1	4	11	0	1	0	0	0	0	0	0	0	5870	1392	48	3		3	FER	5	108387304	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	12322375	108387304	72527956	596	28763											
FER	2241	broad.mit.edu	37	chr5	108388038	108388038	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctccccaggctgactcaaCcactgtcttcagcagcagga	8	15	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108388038	G	G	108388038	1	3	11	0	1	0	0	0	0	0	0	0	5870	522	18	4		4	FER	5	108388038	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	734	108388038	72527222	597	28764											
CAMK4	814	broad.mit.edu	37	chr5	110820197	110820197	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatctggaagccaaacaccGgcattttatgtactttgtcc	8	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110820197	A	A	110820197	1	1	11	0	1	0	0	0	0	0	0	0	2631	1131	39	4		4	CAMK4	5	110820197	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	2432159	110820197	70095063	598	28765											
AP3S1	1176	broad.mit.edu	37	chr5	115230739	115230739	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttatagataatagttttGaataaatttaaacagttctt	4	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115230739	T	T	115230739	1	4	11	0	1	0	0	0	0	0	0	0	751	1305	45	3		3	AP3S1	5	115230739	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4410542	115230739	65684521	599	28766											
AQPEP	206338	broad.mit.edu	37	chr5	115335573	115335573	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagtgaaatacaggaaCtctttgacatatttacttac	5	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115335573	G	G	115335573	3	3	11	1	0	0	0	0	1	0	0	0	836	565	20	4	1515	4	AQPEP	5	115335573	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	104834	115335573	65579687	600	28767											
DMXL1	1657	broad.mit.edu	37	chr5	118556759	118556759	+	Frame_Shift_Del	DEL	G	-	-													ggcttggtagtacacagactGgcagaggagcatctgtggta							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118556759	-	-	118556759	7	5	11	1	0	1	0	1	0	0	0	0	4634	1348	47	0	8339	0	DMXL1	5	118556759	Frame_Shift_Del	DEL	G	TCGA-05-4398-01A-01D-1265-08	3221186	118556759	62358501	601	28768											
ZNF608	57507	broad.mit.edu	37	chr5	123982290	123982290	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctttcctgtgtcagaagTctaaccagatcaagcccaga	7	11	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123982290	A	A	123982290	1	1	11	0	1	0	0	0	0	0	0	0	18161	1682	58	5		5	ZNF608	5	123982290	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	5425531	123982290	56932970	602	28769											
MEGF10	84466	broad.mit.edu	37	chr5	126667256	126667256	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatcattagtcatagctAgcaaattaggtggtgttagt	9	4	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126667256	G	G	126667256	1	3	11	0	1	0	0	0	0	0	0	0	9553	435	15	5		5	MEGF10	5	126667256	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2684966	126667256	54248004	603	28770											
MEGF10	84466	broad.mit.edu	37	chr5	126674923	126674923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcggcacaggtaatagaaGctcaggcatgtttgtgagtt	13	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126674923	A	A	126674923	1	1	11	0	1	0	0	0	0	0	0	0	9553	986	34	4		4	MEGF10	5	126674923	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	7667	126674923	54240337	604	28771											
FBN2	2201	broad.mit.edu	37	chr5	127653834	127653834	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttgtttcatatagcttTacttaccaacacaacccaca	3	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127653834	A	A	127653834	1	1	11	0	1	0	0	0	0	0	0	0	5760	1769	61	5		5	FBN2	5	127653834	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	978911	127653834	53261426	605	28772											
FBN2	2201	broad.mit.edu	37	chr5	127664519	127664519	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacactcatcaacatctgtgCaaaaaagcaaattacatctc	3	12	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127664519	T	T	127664519	1	4	11	0	1	0	0	0	0	0	0	0	5760	725	25	4		4	FBN2	5	127664519	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	10685	127664519	53250741	606	28773											
FBN2	2201	broad.mit.edu	37	chr5	127800495	127800495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctggacacatctcacaggGatggccccacgcccgtccaa	11	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127800495	T	T	127800495	3	4	11	1	0	0	0	0	1	0	0	0	5760	1174	41	3	8230	3	FBN2	5	127800495	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	135976	127800495	53114765	607	28774											
RAPGEF6	51735	broad.mit.edu	37	chr5	130970735	130970735	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagttcatggccacggcccGggtactccgcagcctgccct	12	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130970735	A	A	130970735	1	1	11	0	1	0	0	0	0	0	0	0	13156	1131	39	4		4	RAPGEF6	5	130970735	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	3170240	130970735	49944525	608	28775											
P4HA2	8974	broad.mit.edu	37	chr5	131539899	131539899	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtttgtttgttttgccTtgaatattttcccagagagc	9	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131539899	A	A	131539899	1	1	11	0	1	0	0	0	0	0	0	0	11451	1624	56	5		5	P4HA2	5	131539899	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	569164	131539899	49375361	609	28776											
P4HA2	8974	broad.mit.edu	37	chr5	131543623	131543623	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagctgagtgagtcctaatCctcggtcccagtctggctgt	12	11	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131543623	A	A	131543623	1	1	11	0	1	0	0	0	0	0	0	0	11451	870	30	3		3	P4HA2	5	131543623	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3724	131543623	49371637	610	28777											
IL13	3596	broad.mit.edu	37	chr5	131995337	131995337	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactcacctgcgccaggcatCtcagccccatcttcctgcag	8	18	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131995337	A	A	131995337	1	1	11	0	1	0	0	0	0	0	0	0	7698	928	32	3		3	IL13	5	131995337	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	451714	131995337	48919923	611	28778											
SEPT8	23176	broad.mit.edu	37	chr5	132100012	132100012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtcataggtctggggcCgcaggcgcacgcatgcctca	16	12	3	0	rs76417071	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132100012	A	A	132100012	3	1	11	1	0	0	0	0	1	0	0	0	14183	652	23	1	1287	1	SEPT8	5	132100012	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	104675	132100012	48815248	612	28779											
DDX46	9879	broad.mit.edu	37	chr5	134126186	134126186	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacaaatcttcgaagagtgAcatatgttgttttagatgaa	8	5	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134126186	T	T	134126186	3	4	11	1	0	0	0	0	1	0	0	0	4397	275	10	5	1620	5	DDX46	5	134126186	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	2026174	134126186	46789074	613	28780											
TRPC7	57113	broad.mit.edu	37	chr5	135692429	135692429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggcgttcatgcgcgagCgcgagtggctgaaggagtct	17	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135692429	A	A	135692429	3	1	11	1	0	0	0	0	1	0	0	0	16709	768	27	3	1985	3	TRPC7	5	135692429	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1566243	135692429	45222831	614	28781											
SPOCK1	6695	broad.mit.edu	37	chr5	136448319	136448319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtctttcctctaagttcCcagaataaaaggccaaataa	6	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136448319	A	A	136448319	1	1	11	0	1	0	0	0	0	0	0	0	15197	638	22	2		2	SPOCK1	5	136448319	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	755890	136448319	44466941	615	28782											
GFRA3	2676	broad.mit.edu	37	chr5	137593648	137593648	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaggtctgagtctgggggGaaagggcacggagtcagtcg	19	7	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137593648	T	T	137593648	1	4	11	0	1	0	0	0	0	0	0	0	6413	1189	41	3		3	GFRA3	5	137593648	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1145329	137593648	43321612	616	28783											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139908217	139908217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccattcccagtgagacctGtgaatcctggcaacacaaat	8	12	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139908217	T	T	139908217	3	4	11	1	0	0	0	0	1	0	0	0	629	1377	48	3	5800	3	ANKHD1-EIF4EBP3	5	139908217	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2314569	139908217	41007043	617	28784											
PCDHA1	56147	broad.mit.edu	37	chr5	140168129	140168129	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggagctggtcgaactcaCagcagaggcggcagagggtg	19	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140168129	T	T	140168129	4	4	11	1	0	0	0	0	0	1	0	0	11613	479	17	4	2256	4	PCDHA1	5	140168129	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	259912	140168129	40747131	618	28785											
PCDHA10	56139	broad.mit.edu	37	chr5	140237095	140237095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggacgcgcaggagaacgccCtggtgtcctactctctggtg	14	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140237095	A	A	140237095	3	1	11	1	0	0	0	0	1	0	0	0	11614	680	24	2	1464	2	PCDHA10	5	140237095	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	68966	140237095	40678165	619	28786											
PCDHA12	56137	broad.mit.edu	37	chr5	140256759	140256759	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcgccggcactgctggcgActccggctggcagcgcagga	16	15	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140256759	G	G	140256759	3	3	11	1	0	0	0	0	1	0	0	0	11616	275	10	5	1704	5	PCDHA12	5	140256759	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	19664	140256759	40658501	620	28787											
PCDHA13	56136	broad.mit.edu	37	chr5	140262802	140262802	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgaagaaaagaaattatatGaaatatccgtggaggcagtt	10	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140262802	A	A	140262802	3	1	11	1	0	0	0	0	1	0	0	0	11617	1291	45	4	951	4	PCDHA13	5	140262802	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	6043	140262802	40652458	621	28788											
PCDHB1	29930	broad.mit.edu	37	chr5	140432667	140432667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaaaggcaactgatgggGgcttcctgtcactgagtagc	14	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140432667	T	T	140432667	3	4	11	1	0	0	0	0	1	0	0	0	11628	1232	43	2	1614	2	PCDHB1	5	140432667	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	169865	140432667	40482593	622	28789											
PCDHB4	56131	broad.mit.edu	37	chr5	140502399	140502399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatatagatgctggaaacttCgggagtgtttcttatggctt	12	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140502399	A	A	140502399	3	1	11	1	0	0	0	0	1	0	0	0	11638	883	31	3	821	3	PCDHB4	5	140502399	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	69732	140502399	40412861	623	28790											
PCDHB6	56130	broad.mit.edu	37	chr5	140530549	140530549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttggacatcaatgacaaCgtccccgagtttgctcagga	10	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140530549	A	A	140530549	3	1	11	1	0	0	0	0	1	0	0	0	11640	535	19	3	713	3	PCDHB6	5	140530549	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	28150	140530549	40384711	624	28791											
PCDHB8	56128	broad.mit.edu	37	chr5	140559495	140559495	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaatggcgaggtgcgcaCcgccaggctgctgagcgagc	16	13	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140559495	T	T	140559495	3	4	11	1	0	0	0	0	1	0	0	0	11642	507	18	4	1882	4	PCDHB8	5	140559495	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	28946	140559495	40355765	625	28792											
PCDHB14	56122	broad.mit.edu	37	chr5	140605057	140605057	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccgccacgctgcacgtGctcctggtggacggcttctc	12	17	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605057	T	T	140605057	2	4	11	1	0	0	0	0	0	0	0	1	11633	1306	46	3		3	PCDHB14	5	140605057	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	45562	140605057	40310203	626	28793											
PCDHB15	56121	broad.mit.edu	37	chr5	140625580	140625580	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccctgaaaatcccagaaaCtagctcccttgggactgtgt	9	12	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140625580	G	G	140625580	3	3	11	1	0	0	0	0	1	0	0	0	11634	565	20	4	436	4	PCDHB15	5	140625580	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	20523	140625580	40289680	627	28794											
PCDHB15	56121	broad.mit.edu	37	chr5	140625593	140625593	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagaaactagctcccttggGactgtgtttcctctgaaaaa	8	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140625593	C	C	140625593	2	2	11	1	0	0	0	0	0	0	0	1	11634	1161	41	4		4	PCDHB15	5	140625593	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	13	140625593	40289667	628	28795											
PCDHB15	56121	broad.mit.edu	37	chr5	140626431	140626432	+	Missense_Mutation	DNP	CC	AA	AA													ccatcacagacttggggactCcaaggctgaaaaccgagcag							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140626432	AA	AA	140626431	3	1	11	1	0	0	0	0	1	0	0	0	11634	855	30	3	1287	3	PCDHB15	5	140626431	Missense_Mutation	DNP	CC	TCGA-05-4398-01A-01D-1265-08	838	140626431	40288829	629	28796											
PCDHGC3	5098	broad.mit.edu	37	chr5	140856219	140856219	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagctgagccgaaatgaatActttgcgcttcgcgtgcaga	12	9	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140856219	G	G	140856219	3	3	11	1	0	0	0	0	1	0	0	0	11663	391	14	5	538	5	PCDHGC3	5	140856219	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	229788	140856219	40059041	630	28797											
KCTD16	57528	broad.mit.edu	37	chr5	143586702	143586702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagtgactttgaagatgCctcccaaggaagcgacacaa	9	12	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143586702	A	A	143586702	3	1	11	1	0	0	0	0	1	0	0	0	8173	739	26	3	427	3	KCTD16	5	143586702	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2730483	143586702	37328558	631	28798											
AFAP1L1	134265	broad.mit.edu	37	chr5	148715098	148715098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcttttgagggcaggctGggtgtgtaggtagccatcac	15	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148715098	T	T	148715098	1	4	11	0	1	0	0	0	0	0	0	0	354	1363	47	2		2	AFAP1L1	5	148715098	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	5128396	148715098	32200162	632	28799											
PDE6A	5145	broad.mit.edu	37	chr5	149247556	149247556	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtagaggaggatgggacacAggtgagctggttctggagct	19	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149247556	T	T	149247556	1	4	11	0	1	0	0	0	0	0	0	0	11739	203	7	5		5	PDE6A	5	149247556	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	532458	149247556	31667704	633	28800											
SPARC	6678	broad.mit.edu	37	chr5	151046061	151046061	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgcttctcattctcatggaTcttcttcacctgagggagta	9	11	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151046061	C	C	151046061	3	2	11	1	0	0	0	0	1	0	0	0	15111	1435	50	5	328	5	SPARC	5	151046061	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	1798505	151046061	29869199	634	28801											
NMUR2	56923	broad.mit.edu	37	chr5	151784176	151784176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccccagacgatgccgaGgatcctgagggcccggcgcc	15	15	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151784176	T	T	151784176	3	4	11	1	0	0	0	0	1	0	0	0	10602	1000	35	2	764	2	NMUR2	5	151784176	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	738115	151784176	29131084	635	28802											
FAM114A2	10827	broad.mit.edu	37	chr5	153413916	153413916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaccccatctggtctgggGtacatctttggaaacattat	8	9	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153413916	T	T	153413916	3	4	11	1	0	0	0	0	1	0	0	0	5450	1261	44	3	1333	3	FAM114A2	5	153413916	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1629740	153413916	27501344	636	28803											
SAP30L	79685	broad.mit.edu	37	chr5	153830579	153830579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaatggaaggaagccccGcaattcgacagatacctatt	9	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153830579	T	T	153830579	1	4	11	0	1	0	0	0	0	0	0	0	13947	1102	38	3		3	SAP30L	5	153830579	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	416663	153830579	27084681	637	28804											
GEMIN5	25929	broad.mit.edu	37	chr5	154271039	154271039	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttctgtgagtctcaagtCtagttctgaaggcctgtttg	10	8	5	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154271039	G	G	154271039	3	3	11	1	0	0	0	0	1	0	0	0	6395	913	32	4	514	4	GEMIN5	5	154271039	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	440460	154271039	26644221	638	28805											
GEMIN5	25929	broad.mit.edu	37	chr5	154284034	154284034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatataccagtcccggaagaCtatggatgggccaaggaagt	12	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154284034	A	A	154284034	1	1	11	0	1	0	0	0	0	0	0	0	6395	580	20	3		3	GEMIN5	5	154284034	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	12995	154284034	26631226	639	28806											
ITK	3702	broad.mit.edu	37	chr5	156649804	156649804	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagactgtctccccagacacCccgatgaaaggaggcatttt	9	13	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156649804	T	T	156649804	1	4	11	0	1	0	0	0	0	0	0	0	7979	638	22	4		4	ITK	5	156649804	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2365770	156649804	24265456	640	28807											
ADAM19	8728	broad.mit.edu	37	chr5	156889996	156889996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacggtatatgggtatagcCctgcagtagcggaagcacag	14	9	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156889996	A	A	156889996	1	1	11	0	1	0	0	0	0	0	0	0	240	638	22	2		2	ADAM19	5	156889996	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	240192	156889996	24025264	641	28808											
EBF1	1879	broad.mit.edu	37	chr5	158523984	158523984	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcgctgcgcccacttacttTttccttctccacgaacccca	5	18	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158523984	A	A	158523984	4	1	11	1	0	0	0	0	0	1	0	0	4920	1850	64	5	1546	5	EBF1	5	158523984	Nonsense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	1633988	158523984	22391276	642	28809											
ATP10B	23120	broad.mit.edu	37	chr5	160029594	160029594	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctacttaccacgttcttgTagaggtagtacaccaccatc	8	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160029594	C	C	160029594	3	2	11	1	0	0	0	0	1	0	0	0	1121	1638	57	5	1056	5	ATP10B	5	160029594	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	1505610	160029594	20885666	643	28810											
GABRA1	2554	broad.mit.edu	37	chr5	161292658	161292658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttcccatttgggtgtcaGtatgtggtggtgagatctaa	12	5	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161292658	T	T	161292658	1	4	11	0	1	0	0	0	0	0	0	0	6220	1044	36	3		3	GABRA1	5	161292658	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1263064	161292658	19622602	644	28811											
GABRG2	2566	broad.mit.edu	37	chr5	161520789	161520789	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtggataaaagtcaacTtgtgtgtaatctatgtgttt	10	4	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161520789	C	C	161520789	1	2	11	0	1	0	0	0	0	0	0	0	6232	1624	56	5		5	GABRG2	5	161520789	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	228131	161520789	19394471	645	28812											
NUDCD2	134492	broad.mit.edu	37	chr5	162887142	162887142	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggctacgcctcggcctctCcgctcgggtcactgcgcatg	12	16	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162887142	A	A	162887142	1	1	11	0	1	0	0	0	0	0	0	0	10818	869	30	3		3	NUDCD2	5	162887142	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	1366353	162887142	18028118	646	28813											
ODZ2	57451	broad.mit.edu	37	chr5	167674040	167674040	+	Frame_Shift_Del	DEL	C	-	-													tccaagttatcagagattgtCtacgacagtaccgccgtcac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167674040	-	-	167674040	7	5	11	1	0	1	0	1	0	0	0	0	10930	900	32	0	6175	0	ODZ2	5	167674040	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	4786898	167674040	13241220	647	28814											
WWC1	23286	broad.mit.edu	37	chr5	167833147	167833147	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtctgtgcttttcccctgggGagaccctgtccctcacccta	9	16	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167833147	A	A	167833147	1	1	11	0	1	0	0	0	0	0	0	0	17538	1189	41	4		4	WWC1	5	167833147	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	159107	167833147	13082113	648	28815											
CDHR2	54825	broad.mit.edu	37	chr5	176001214	176001214	+	Intron	DEL	G	-	-													gaccgcctttgtgaccgccaGggggcagcatctccacagac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176001214	-	-	176001214	6	5	11	0	1	1	0	1	0	0	0	0	3149	1015	35	0		0	CDHR2	5	176001214	Intron	DEL	G	TCGA-05-4398-01A-01D-1265-08	8168067	176001214	4914046	649	28816											
GPRIN1	114787	broad.mit.edu	37	chr5	176026902	176026902	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacagagagagagctgactCagacttcccaaagctcagtg	10	10	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176026902	G	G	176026902	1	3	11	0	1	0	0	0	0	0	0	0	6795	841	29	4		4	GPRIN1	5	176026902	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	25688	176026902	4888358	650	28817											
UNC5A	90249	broad.mit.edu	37	chr5	176295410	176295410	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatgagtggataaagtgcCtgtggacacggcccagccac	14	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176295410	T	T	176295410	1	4	11	0	1	0	0	0	0	0	0	0	17117	696	24	4		4	UNC5A	5	176295410	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	268508	176295410	4619850	651	28818											
ZNF454	285676	broad.mit.edu	37	chr5	178369899	178369899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttgcttcctcagaccgGgagctttattcccaatccag	8	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178369899	T	T	178369899	1	4	11	0	1	0	0	0	0	0	0	0	18050	1247	43	2		2	ZNF454	5	178369899	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2074489	178369899	2545361	652	28819											
RUFY1	80230	broad.mit.edu	37	chr5	179023586	179023586	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcactcggagcgggcgaGgcagggggctgaggagcgga	22	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179023586	A	A	179023586	3	1	11	1	0	0	0	0	1	0	0	0	13849	1000	35	4	1585	4	RUFY1	5	179023586	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	653687	179023586	1891674	653	28820											
MAML1	9794	broad.mit.edu	37	chr5	179193482	179193482	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagccatgtgaacctgctgAgtcaccagccaccgagtaac	9	15	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179193482	T	T	179193482	3	4	11	1	0	0	0	0	1	0	0	0	9297	304	11	5	1477	5	MAML1	5	179193482	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	169896	179193482	1721778	654	28821											
MAPK9	5601	broad.mit.edu	37	chr5	179691800	179691800	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacatcttgaaattcttctaGagttttttgtggtgtaaaca	7	6	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179691800	C	C	179691800	3	2	11	1	0	0	0	0	1	0	0	0	9379	933	33	4	1140	4	MAPK9	5	179691800	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	498318	179691800	1223460	655	28822											
FLT4	2324	broad.mit.edu	37	chr5	180043331	180043331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccccttcacctgttccGccccacgttccctctcctca	3	24	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180043331	T	T	180043331	1	4	11	0	1	0	0	0	0	0	0	0	6002	1102	38	3		3	FLT4	5	180043331	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	351531	180043331	871929	656	28823											
FLT4	2324	broad.mit.edu	37	chr5	180057260	180057260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaggccggggatggacaCcagacagggcacccacatgg	15	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180057260	A	A	180057260	3	1	11	1	0	0	0	0	1	0	0	0	6002	507	18	3	3729	3	FLT4	5	180057260	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	13929	180057260	858000	657	28824											
LY86	9450	broad.mit.edu	37	chr6	6589040	6589040	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtggaggcggcggtgggAaagcctggcccacacacgtg	18	11	0	0	rs75006006		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6589040	G	G	6589040	3	3	11	1	0	0	0	0	1	0	0	0	9188	247	9	5	75	5	LY86	6	6589040	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08		6589040	164526027	658	28825											
CAGE1	285782	broad.mit.edu	37	chr6	7341682	7341682	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatctcatctatgatcacAtgtaggttatacctcttggc	6	9	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7341682	T	T	7341682	1	4	11	0	1	0	0	0	0	0	0	0	2598	232	8	5		5	CAGE1	6	7341682	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	752642	7341682	163773385	659	28826											
LRRC16A	55604	broad.mit.edu	37	chr6	25605014	25605015	+	Intron	DNP	GG	TT	TT													taaataaatgtgcactttttGgggggatggtgcttgaattt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	25605015	TT	TT	25605014	1	4	11	0	1	0	0	0	0	0	0	0	9058	1363	47	2		2	LRRC16A	6	25605014	Intron	DNP	GG	TCGA-05-4398-01A-01D-1265-08	18263332	25605014	145510053	660	28827											
SLC17A4	10050	broad.mit.edu	37	chr6	25771138	25771138	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctctcacccagaacatcctCgcctcttctgttcagggtca	6	17	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25771138	T	T	25771138	1	4	11	0	1	0	0	0	0	0	0	0	14532	899	31	4		4	SLC17A4	6	25771138	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	166124	25771138	145343929	661	28828											
PRSS16	10279	broad.mit.edu	37	chr6	27216585	27216585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattgagaataagtcaggaCtctcacagtgccatttcttc	8	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27216585	A	A	27216585	1	1	11	0	1	0	0	0	0	0	0	0	12722	580	20	3		3	PRSS16	6	27216585	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1445447	27216585	143898482	662	28829											
TRIM27	5987	broad.mit.edu	37	chr6	28876835	28876835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcaaatctggaggtgtgatCcaaggttcaggaatcctgat	12	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28876835	A	A	28876835	3	1	11	1	0	0	0	0	1	0	0	0	16625	856	30	3	756	3	TRIM27	6	28876835	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1660250	28876835	142238232	663	28830											
OR14J1	442191	broad.mit.edu	37	chr6	29274975	29274975	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catacctctctgtgggaagaGagtcattcaccaattcttct	7	11	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29274975	C	C	29274975	3	2	11	1	0	0	0	0	1	0	0	0	11042	942	33	4	511	4	OR14J1	6	29274975	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	398140	29274975	141840092	664	28831											
OR2H2	7932	broad.mit.edu	37	chr6	29555777	29555777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggcttctctgaacaccCagggctggaaaggactctct	11	12	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29555777	A	A	29555777	3	1	11	1	0	0	0	0	1	0	0	0	11096	594	21	2	58	2	OR2H2	6	29555777	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	280802	29555777	141559290	665	28832											
GABBR1	2550	broad.mit.edu	37	chr6	29599302	29599302	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccactggcaggaagttgaTagccttcacctggtcccgag	12	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29599302	C	C	29599302	3	2	11	1	0	0	0	0	1	0	0	0	6215	1406	49	5	2954	5	GABBR1	6	29599302	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	43525	29599302	141515765	666	28833											
DHX16	8449	broad.mit.edu	37	chr6	30630700	30630700	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctcacctcattcccaagCttcacacccatctcccgggc	4	19	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30630700	T	T	30630700	2	4	11	1	0	0	0	0	0	0	0	1	4542	796	28	4		4	DHX16	6	30630700	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1031398	30630700	140484367	667	28834											
SFTA2	389376	broad.mit.edu	37	chr6	30899730	30899730	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactggggtgtctctgtcacTctcagggaccatgaagtccc	12	12	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30899730	G	G	30899730	1	3	11	0	1	0	0	0	0	0	0	0	14300	1566	54	5		5	SFTA2	6	30899730	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	269030	30899730	140215337	668	28835											
SLC44A4	80736	broad.mit.edu	37	chr6	31838834	31838834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccagggcactgtaggcaGggtgaggacagtgaggttca	16	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31838834	T	T	31838834	1	4	11	0	1	0	0	0	0	0	0	0	14752	1015	35	2		2	SLC44A4	6	31838834	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	939104	31838834	139276233	669	28836											
CFB	629	broad.mit.edu	37	chr6	31916238	31916238	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagtgtctgaagcagacAgcagtaatgcagactgggtc	12	8	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31916238	T	T	31916238	3	4	11	1	0	0	0	0	1	0	0	0	3308	188	7	5	1011	5	CFB	6	31916238	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	77404	31916238	139198829	670	28837											
RDBP	7936	broad.mit.edu	37	chr6	31923094	31923094	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtggtgagagacctacctCagtgtggagcaggaggttgc	17	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31923094	T	T	31923094	1	4	11	0	1	0	0	0	0	0	0	0	13296	841	29	4		4	RDBP	6	31923094	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6856	31923094	139191973	671	28838											
C4A	720	broad.mit.edu	37	chr6	31962229	31962229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagtgaggggtggggagGctaaccgggccaggactctg	19	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31962229	T	T	31962229	1	4	11	0	1	0	0	0	0	0	0	0	2270	1218	42	3		3	C4A	6	31962229	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	39135	31962229	139152838	672	28839											
TNXB	7148	broad.mit.edu	37	chr6	32052440	32052440	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcaccgtcagctcaccCaggcgtggtgggcctgagga	14	13	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32052440	A	A	32052440	2	1	11	1	0	0	0	0	0	0	0	1	16469	581	21	2		2	TNXB	6	32052440	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	90211	32052440	139062627	673	28840											
NOTCH4	4855	broad.mit.edu	37	chr6	32168733	32168733	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagggacagcgggatgccGggtggtcagggccacagcgg	19	12	1	0	rs138572849		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32168733	A	A	32168733	3	1	11	1	0	0	0	0	1	0	0	0	10646	1116	39	4	1853	4	NOTCH4	6	32168733	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	116293	32168733	138946334	674	28841											
GRM4	2914	broad.mit.edu	37	chr6	34007929	34007929	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaactgcgtgagtcactctcCacccactccctgccctccca	6	20	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34007929	G	G	34007929	1	3	11	0	1	0	0	0	0	0	0	0	6865	609	21	4		4	GRM4	6	34007929	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1839196	34007929	137107138	675	28842											
C6orf106	64771	broad.mit.edu	37	chr6	34558264	34558264	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtgcgatgtggtctgcaatCcagaggaaccccttgcccta	11	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34558264	G	G	34558264	1	3	11	0	1	0	0	0	0	0	0	0	2342	870	30	4		4	C6orf106	6	34558264	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	550335	34558264	136556803	676	28843											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34831773	34831773	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtttttgtttttttttttAaacagggagcccatggccaa	9	6	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34831773	G	G	34831773	1	3	11	0	1	0	0	0	0	0	0	0	17094	377	13	5		5	UHRF1BP1	6	34831773	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	273509	34831773	136283294	677	28844											
GLP1R	2740	broad.mit.edu	37	chr6	39033698	39033698	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttggctttgatgggggcatCtgtggtcatttcatccatct	11	9	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39033698	A	A	39033698	1	1	11	0	1	0	0	0	0	0	0	0	6516	928	32	3		3	GLP1R	6	39033698	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4201925	39033698	132081369	678	28845											
TFEB	7942	broad.mit.edu	37	chr6	41658482	41658482	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcggaggaggacagcacGtgtccagctcgcacccctgg	14	15	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41658482	A	A	41658482	2	1	11	1	0	0	0	0	0	0	0	1	15924	1136	40	4		4	TFEB	6	41658482	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2624784	41658482	129456585	679	28846											
CCND3	896	broad.mit.edu	37	chr6	41907959	41907959	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcacaccacaatgccccatCgtttgttccaccccaattcc	3	18	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41907959	A	A	41907959	1	1	11	0	1	0	0	0	0	0	0	0	2948	899	31	3		3	CCND3	6	41907959	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	249477	41907959	129207108	680	28847											
MRPL2	51069	broad.mit.edu	37	chr6	43023909	43023909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgtttccggctgccccCagcaaccagagctatgtctg	10	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43023909	A	A	43023909	3	1	11	1	0	0	0	0	1	0	0	0	9879	594	21	2	503	2	MRPL2	6	43023909	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1115950	43023909	128091158	681	28848											
TTBK1	84630	broad.mit.edu	37	chr6	43227075	43227075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgattcccagccttgtgccCctgccctgttcctcctaagc	7	19	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43227075	A	A	43227075	1	1	11	0	1	0	0	0	0	0	0	0	16802	638	22	2		2	TTBK1	6	43227075	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	203166	43227075	127887992	682	28849											
AARS2	57505	broad.mit.edu	37	chr6	44270894	44270894	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccccactgataccacccGcacagggtctgggtaaacct	8	17	1	1	rs145436818	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44270894	A	A	44270894	3	1	11	1	0	0	0	0	1	0	0	0	20	1086	38	4	821	4	AARS2	6	44270894	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1043819	44270894	126844173	683	28850											
GPR116	221395	broad.mit.edu	37	chr6	46826211	46826211	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctcccagcgtgatgacCgagatggcaagtgggcagcc	16	11	0	3	rs142588297	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46826211	A	A	46826211	2	1	11	1	0	0	0	0	0	0	0	1	6698	639	23	1		1	GPR116	6	46826211	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2555317	46826211	124288856	684	28851											
CRISP3	10321	broad.mit.edu	37	chr6	49700890	49700890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcattattgacaataaacGctaaaatatatacttacgca	4	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49700890	T	T	49700890	1	4	11	0	1	0	0	0	0	0	0	0	3913	1102	38	3		3	CRISP3	6	49700890	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2874679	49700890	121414177	685	28852											
PGK2	5232	broad.mit.edu	37	chr6	49754060	49754060	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaatcaacaggaaaagTaatccttacaccattctttt	3	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49754060	A	A	49754060	3	1	11	1	0	0	0	0	1	0	0	0	11886	1638	57	5	416	5	PGK2	6	49754060	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	53170	49754060	121361007	686	28853											
TFAP2D	83741	broad.mit.edu	37	chr6	50696780	50696780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatttctgctaactgataCcataccctcaacccttagtc	4	13	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50696780	A	A	50696780	1	1	11	0	1	0	0	0	0	0	0	0	15913	522	18	3		3	TFAP2D	6	50696780	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	942720	50696780	120418287	687	28854											
TFAP2B	7021	broad.mit.edu	37	chr6	50786602	50786602	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagacatctgctcctcacaTgaatgcactcacctcctaga	5	16	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50786602	C	C	50786602	1	2	11	0	1	0	0	0	0	0	0	0	15911	1479	51	5		5	TFAP2B	6	50786602	5'UTR	SNP	T	TCGA-05-4398-01A-01D-1265-08	89822	50786602	120328465	688	28855											
PKHD1	5314	broad.mit.edu	37	chr6	51751937	51751937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccccaaagttacctggtaCaagaatgtgcaatgttctga	8	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51751937	A	A	51751937	3	1	11	1	0	0	0	0	1	0	0	0	12066	478	17	3	5256	3	PKHD1	6	51751937	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	965335	51751937	119363130	689	28856											
PKHD1	5314	broad.mit.edu	37	chr6	51892578	51892578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaatctgaatatccagCaaatagaattgctggataat	6	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51892578	A	A	51892578	1	1	11	0	1	0	0	0	0	0	0	0	12066	725	25	3		3	PKHD1	6	51892578	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	140641	51892578	119222489	690	28857											
PKHD1	5314	broad.mit.edu	37	chr6	51892619	51892619	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgataacagtcacataagagCcactcacccagcagggaccc	8	14	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51892619	A	A	51892619	1	1	11	0	1	0	0	0	0	0	0	0	12066	754	26	3		3	PKHD1	6	51892619	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	41	51892619	119222448	691	28858											
C6orf142	90523	broad.mit.edu	37	chr6	53989729	53989729	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaccctttgtcttgggcGgtctgcaaaggccatcctgt	11	12	2	0	rs138875104	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53989729	A	A	53989729	1	1	11	0	1	0	0	0	0	0	0	0	2356	1131	39	4		4	C6orf142	6	53989729	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2097110	53989729	117125338	692	28859											
C6orf142	90523	broad.mit.edu	37	chr6	54025355	54025355	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcagcaaactgaagagctCtgtgctaccattgataaggt	11	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54025355	G	G	54025355	2	3	11	1	0	0	0	0	0	0	0	1	2356	900	32	4		4	C6orf142	6	54025355	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	35626	54025355	117089712	693	28860											
HCRTR2	3062	broad.mit.edu	37	chr6	55113470	55113470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagaaccaccacatgaGgacggtaaccaactacttca	9	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55113470	T	T	55113470	3	4	11	1	0	0	0	0	1	0	0	0	7069	1000	35	2	263	2	HCRTR2	6	55113470	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1088115	55113470	116001597	694	28861											
DST	667	broad.mit.edu	37	chr6	56470661	56470661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtctttaatgataggcGgcaatacatccttaagtacc	8	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56470661	T	T	56470661	1	4	11	0	1	0	0	0	0	0	0	0	4823	1131	39	1		1	DST	6	56470661	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1357191	56470661	114644406	695	28862											
KHDRBS2	202559	broad.mit.edu	37	chr6	62611152	62611152	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaagaatgaatgtaccttGaaggagctgtgggagctatt	13	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62611152	A	A	62611152	3	1	11	1	0	0	0	0	1	0	0	0	8217	1294	45	4	461	4	KHDRBS2	6	62611152	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	6140491	62611152	108503915	696	28863											
BAI3	577	broad.mit.edu	37	chr6	69665848	69665848	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaagggtggttttaccAggtactttctgtacagcttg	10	8	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69665848	G	G	69665848	1	3	11	0	1	0	0	0	0	0	0	0	1305	203	7	5		5	BAI3	6	69665848	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	7054696	69665848	101449219	697	28864											
BAI3	577	broad.mit.edu	37	chr6	70065661	70065661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgattagtaaaagacaCttgaggtcttcattaaatga	7	5	3	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70065661	A	A	70065661	1	1	11	0	1	0	0	0	0	0	0	0	1305	580	20	3		3	BAI3	6	70065661	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	399813	70065661	101049406	698	28865											
COL19A1	1310	broad.mit.edu	37	chr6	70851890	70851890	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaattaaagaaacattgaTctttccttccccccacgtgt	5	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70851890	C	C	70851890	1	2	11	0	1	0	0	0	0	0	0	0	3708	1450	50	5		5	COL19A1	6	70851890	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	786229	70851890	100263177	699	28866											
B3GAT2	135152	broad.mit.edu	37	chr6	71571616	71571616	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agattcttgcatccctggctGggatccacgacgcttaaata	9	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71571616	A	A	71571616	4	1	11	1	0	0	0	0	0	1	0	0	1259	1357	47	4	177	4	B3GAT2	6	71571616	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	719726	71571616	99543451	700	28867											
TTK	7272	broad.mit.edu	37	chr6	80732225	80732225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacaatattgcttttttGttcataatgcatttccgaag	6	6	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80732225	T	T	80732225	1	4	11	0	1	0	0	0	0	0	0	0	16846	1392	48	3		3	TTK	6	80732225	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	9160609	80732225	90382842	701	28868											
TTK	7272	broad.mit.edu	37	chr6	80745021	80745021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctacatggtaatggagtGtggaaatattgatcttaata	9	4	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80745021	T	T	80745021	3	4	11	1	0	0	0	0	1	0	0	0	16846	1377	48	3	1869	3	TTK	6	80745021	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	12796	80745021	90370046	702	28869											
FAM46A	55603	broad.mit.edu	37	chr6	82461348	82461348	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttctctttgttcaccccctCgggtaagaagtccaacaggc	8	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82461348	T	T	82461348	3	4	11	1	0	0	0	0	1	0	0	0	5616	893	31	4	825	4	FAM46A	6	82461348	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1716327	82461348	88653719	703	28870											
TBX18	9096	broad.mit.edu	37	chr6	85446331	85446331	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaccacagagagtttctttCcacatagcttttaaaaaaga	5	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85446331	A	A	85446331	1	1	11	0	1	0	0	0	0	0	0	0	15775	870	30	3		3	TBX18	6	85446331	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	2984983	85446331	85668736	704	28871											
MDN1	23195	broad.mit.edu	37	chr6	90387476	90387476	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagagaatggatgtgcccccCtctcccctgctactcaaagc	8	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90387476	G	G	90387476	1	3	11	0	1	0	0	0	0	0	0	0	9508	696	24	4		4	MDN1	6	90387476	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4941145	90387476	80727591	705	28872											
MDN1	23195	broad.mit.edu	37	chr6	90491468	90491468	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgtaatcccaacactctGagaaaccaaggcagaggaat	8	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90491468	C	C	90491468	1	2	11	0	1	0	0	0	0	0	0	0	9508	1305	45	4		4	MDN1	6	90491468	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	103992	90491468	80623599	706	28873											
EPHA7	2045	broad.mit.edu	37	chr6	93965525	93965525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaagaatatgaagaagtgCagtaaatgactttttcttac	7	5	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93965525	A	A	93965525	1	1	11	0	1	0	0	0	0	0	0	0	5214	725	25	3		3	EPHA7	6	93965525	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3474057	93965525	77149542	707	28874											
LIN28B	389421	broad.mit.edu	37	chr6	105404964	105404964	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagggggccagaaactggaGagaggagagaaaaaaatcaa	14	5	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105404964	C	C	105404964	1	2	11	0	1	0	0	0	0	0	0	0	8879	957	33	4		4	LIN28B	6	105404964	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	11439439	105404964	65710103	708	28875											
BVES	11149	broad.mit.edu	37	chr6	105581345	105581345	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgatgtatctctctccaGttttcacaagtggtcttatt	7	8	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105581345	C	C	105581345	3	2	11	1	0	0	0	0	1	0	0	0	1585	1020	36	4	1002	4	BVES	6	105581345	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	176381	105581345	65533722	709	28876											
BVES	11149	broad.mit.edu	37	chr6	105581378	105581378	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttattggaaggcacaggTatgatactttctaactcagg	10	7	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105581378	A	A	105581378	2	1	11	1	0	0	0	0	0	0	0	1	1585	1628	57	5		5	BVES	6	105581378	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	33	105581378	65533689	710	28877											
DDO	8528	broad.mit.edu	37	chr6	110725922	110725922	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtattttatgaatagctacGaagtgatttatggctatgac	9	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110725922	A	A	110725922	1	1	11	0	1	0	0	0	0	0	0	0	4367	1073	37	4		4	DDO	6	110725922	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	5144544	110725922	60389145	711	28878											
REV3L	5980	broad.mit.edu	37	chr6	111695285	111695285	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacacaatctgctgctgacTgtctttgcaatgcaaaaaat	7	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111695285	A	A	111695285	3	1	11	1	0	0	0	0	1	0	0	0	13348	1580	55	5	5199	5	REV3L	6	111695285	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	969363	111695285	59419782	712	28879											
LAMA4	3910	broad.mit.edu	37	chr6	112462651	112462651	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctttagttcccaaattatAgacgtataccagattatcat	4	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112462651	G	G	112462651	3	3	11	1	0	0	0	0	1	0	0	0	8680	420	15	5	2825	5	LAMA4	6	112462651	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	767366	112462651	58652416	713	28880											
GPRC6A	222545	broad.mit.edu	37	chr6	117121902	117121902	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttaaatccccgtgagcatCaaaatgaaatgaattccatc	5	9	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117121902	T	T	117121902	3	4	11	1	0	0	0	0	1	0	0	0	6794	826	29	4	1399	4	GPRC6A	6	117121902	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	4659251	117121902	53993165	714	28881											
GPRC6A	222545	broad.mit.edu	37	chr6	117150232	117150232	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggaatcattaagtgcacgGagtgccagcaagattcctat	10	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117150232	T	T	117150232	1	4	11	0	1	0	0	0	0	0	0	0	6794	1189	41	3		3	GPRC6A	6	117150232	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08	28330	117150232	53964835	715	28882											
DCBLD1	285761	broad.mit.edu	37	chr6	117864321	117864321	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtggctattccattggtGctccttgttgtcctggtgtt	12	9	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117864321	T	T	117864321	2	4	11	1	0	0	0	0	0	0	0	1	4313	1306	46	3		3	DCBLD1	6	117864321	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	714089	117864321	53250746	716	28883											
GOPC	57120	broad.mit.edu	37	chr6	117896421	117896421	+	Frame_Shift_Del	DEL	C	-	-													ggagaacagctatatgtctaCgaagggcttcattctctttt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117896421	-	-	117896421	7	5	11	1	0	1	0	1	0	0	0	0	6637	536	19	0	843	0	GOPC	6	117896421	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	32100	117896421	53218646	717	28884											
LAMA2	3908	broad.mit.edu	37	chr6	129637025	129637025	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacacctactcatgctaGaattatcgtcaggcatatgg	10	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129637025	T	T	129637025	3	4	11	1	0	0	0	0	1	0	0	0	8678	942	33	3	3956	3	LAMA2	6	129637025	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	11740604	129637025	41478042	718	28885											
LAMA2	3908	broad.mit.edu	37	chr6	129723403	129723403	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtagttatgtctcatagAgaaattagtaaaagagagga	11	3	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129723403	G	G	129723403	1	3	11	0	1	0	0	0	0	0	0	0	8678	319	11	5		5	LAMA2	6	129723403	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	86378	129723403	41391664	719	28886											
LAMA2	3908	broad.mit.edu	37	chr6	129777622	129777622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgctgtttgttggtggcCtgactgggaaattaaaggta	13	5	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129777622	A	A	129777622	3	1	11	1	0	0	0	0	1	0	0	0	8678	680	24	2	7040	2	LAMA2	6	129777622	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	54219	129777622	41337445	720	28887											
ARHGAP18	93663	broad.mit.edu	37	chr6	129959400	129959400	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaagcaagtctctcttgTttcctgcaagcatagagctt	9	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129959400	C	C	129959400	1	2	11	0	1	0	0	0	0	0	0	0	870	1740	60	5		5	ARHGAP18	6	129959400	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	181778	129959400	41155667	721	28888											
SAMD3	154075	broad.mit.edu	37	chr6	130465632	130465632	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaagcttcagttttcccaGaggtaaattccagtacaata	7	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130465632	A	A	130465632	1	1	11	0	1	0	0	0	0	0	0	0	13931	957	33	4		4	SAMD3	6	130465632	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	506232	130465632	40649435	722	28889											
SAMD3	154075	broad.mit.edu	37	chr6	130465809	130465809	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactcaatcctaaatacatgAaaggcagctactagcgcagc	7	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130465809	T	T	130465809	3	4	11	1	0	0	0	0	1	0	0	0	13931	243	9	5	147	5	SAMD3	6	130465809	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	177	130465809	40649258	723	28890											
SAMD3	154075	broad.mit.edu	37	chr6	130535394	130535395	+	Intron	DNP	CC	AG	AG													ctgaaaacggtcacagttttCcaagggctttaaacccaaac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	130535395	AG	AG	130535394	1	1	11	0	1	0	0	0	0	0	0	0	13931	870	30	3		3	SAMD3	6	130535394	Intron	DNP	CC	TCGA-05-4398-01A-01D-1265-08	69585	130535394	40579673	724	28891											
TMEM200A	114801	broad.mit.edu	37	chr6	130762082	130762082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtcattgacattcacaCgctaagaatcaaggagcaaa	7	10	3	2	rs149308469		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130762082	A	A	130762082	3	1	11	1	0	0	0	0	1	0	0	0	16246	536	19	3	517	3	TMEM200A	6	130762082	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	226688	130762082	40352985	725	28892											
ARG1	383	broad.mit.edu	37	chr6	131894469	131894469	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gattattggagctcctttctCaaagggacaggtaaggaaaa	11	6	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131894469	G	G	131894469	4	3	11	1	0	0	0	0	0	1	0	0	859	838	29	4	49	4	ARG1	6	131894469	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1132387	131894469	39220598	726	28893											
MED23	9439	broad.mit.edu	37	chr6	131902533	131902533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggtaaaagactggttGgtactctagtgcaatagaat	12	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131902533	T	T	131902533	1	4	11	0	1	0	0	0	0	0	0	0	9534	1363	47	2		2	MED23	6	131902533	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	8064	131902533	39212534	727	28894											
ENPP3	5169	broad.mit.edu	37	chr6	131979581	131979582	+	Intron	DNP	GG	TT	TT													gtaagtcttctgtaactagtGgcatgcaaatgataaagaca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	131979582	TT	TT	131979581	1	4	11	0	1	0	0	0	0	0	0	0	5173	1363	47	2		2	ENPP3	6	131979581	Intron	DNP	GG	TCGA-05-4398-01A-01D-1265-08	77048	131979581	39135486	728	28895											
MOXD1	26002	broad.mit.edu	37	chr6	132619061	132619061	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaaagaaaggtttttataTtgcttgggacttttgataat	9	2	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132619061	A	A	132619061	3	1	11	1	0	0	0	0	1	0	0	0	9814	1490	52	5	307	5	MOXD1	6	132619061	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	639480	132619061	38496006	729	28896											
MOXD1	26002	broad.mit.edu	37	chr6	132693911	132693911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaataatgtaagcaaaaatGctcgtatacactttcaataa	4	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132693911	T	T	132693911	1	4	11	0	1	0	0	0	0	0	0	0	9814	1334	46	3		3	MOXD1	6	132693911	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	74850	132693911	38421156	730	28897											
VNN1	8876	broad.mit.edu	37	chr6	133033073	133033073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgggcttcccccacaccCcttaaatcttattttgtttt	4	12	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133033073	A	A	133033073	1	1	11	0	1	0	0	0	0	0	0	0	17309	638	22	2		2	VNN1	6	133033073	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	339162	133033073	38081994	731	28898											
EYA4	2070	broad.mit.edu	37	chr6	133834083	133834083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacctttgtttgccaacaGgtgtaagaggaggggttgac	13	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133834083	T	T	133834083	3	4	11	1	0	0	0	0	1	0	0	0	5374	1000	35	2	1466	2	EYA4	6	133834083	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	801010	133834083	37280984	732	28899											
PEX7	5191	broad.mit.edu	37	chr6	137146476	137146476	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttaatagaattaggttttGactctttgattaatgtttta	6	4	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137146476	C	C	137146476	1	2	11	0	1	0	0	0	0	0	0	0	11846	1305	45	4		4	PEX7	6	137146476	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3312393	137146476	33968591	733	28900											
CCDC28A	25901	broad.mit.edu	37	chr6	139100986	139100986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaagaccaaacctcaGggtggagagggcaaaggcgc	14	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139100986	T	T	139100986	3	4	11	1	0	0	0	0	1	0	0	0	2829	991	35	2	466	2	CCDC28A	6	139100986	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1954510	139100986	32014081	734	28901											
PEX3	8504	broad.mit.edu	37	chr6	143792077	143792077	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattaatcacagtaccaaatGcttttcttttctctgtgaag	5	8	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143792077	C	C	143792077	1	2	11	0	1	0	0	0	0	0	0	0	11842	1334	46	4		4	PEX3	6	143792077	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4691091	143792077	27322990	735	28902											
PHACTR2	9749	broad.mit.edu	37	chr6	144074871	144074871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaagttagacatctagGtgtttctttcccattttaga	7	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144074871	T	T	144074871	1	4	11	0	1	0	0	0	0	0	0	0	11905	1276	44	3		3	PHACTR2	6	144074871	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	282794	144074871	27040196	736	28903											
MTHFD1L	25902	broad.mit.edu	37	chr6	151413614	151413614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccccagatgagcaccatGccaggactgcccacccggcc	9	20	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151413614	T	T	151413614	3	4	11	1	0	0	0	0	1	0	0	0	10022	1319	46	3	2965	3	MTHFD1L	6	151413614	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	7338743	151413614	19701453	737	28904											
SYNE1	23345	broad.mit.edu	37	chr6	152599233	152599233	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaccctcacctgcatgttGagctgcttatcatgcagggc	11	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152599233	A	A	152599233	2	1	11	1	0	0	0	0	0	0	0	1	15564	1277	45	4		4	SYNE1	6	152599233	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1185619	152599233	18515834	738	28905											
SYNE1	23345	broad.mit.edu	37	chr6	152686025	152686025	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaagggatgcccacatatCcttcacactctgcagctgct	7	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152686025	A	A	152686025	3	1	11	1	0	0	0	0	1	0	0	0	15564	855	30	3	16700	3	SYNE1	6	152686025	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	86792	152686025	18429042	739	28906											
SYNE1	23345	broad.mit.edu	37	chr6	152712315	152712315	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcccacacaatcctcatttaGaggcttacagaacaattagg	7	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152712315	C	C	152712315	1	2	11	0	1	0	0	0	0	0	0	0	15564	957	33	4		4	SYNE1	6	152712315	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	26290	152712315	18402752	740	28907											
SYNE1	23345	broad.mit.edu	37	chr6	152809592	152809592	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaaatctctctcaaatTgttctatccaaactttcatt	2	10	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152809592	A	A	152809592	3	1	11	1	0	0	0	0	1	0	0	0	15564	1812	63	5	26020	5	SYNE1	6	152809592	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	97277	152809592	18305475	741	28908											
RBM16	22828	broad.mit.edu	37	chr6	155145395	155145395	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgccagccgtgcctacaGttagtttagtcccaccagca	10	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155145395	T	T	155145395	3	4	11	1	0	0	0	0	1	0	0	0	13226	1029	36	3	2020	3	RBM16	6	155145395	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2335803	155145395	15969672	742	28909											
NOX3	50508	broad.mit.edu	37	chr6	155749817	155749817	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaaatttagacacagtctCaaactcaccatttaataaag	3	10	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155749817	G	G	155749817	1	3	11	0	1	0	0	0	0	0	0	0	10652	841	29	4		4	NOX3	6	155749817	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	604422	155749817	15365250	743	28910											
ZDHHC14	79683	broad.mit.edu	37	chr6	157963732	157963732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcgaccccggagtcctcCcacgagccacgcctgatgaa	10	17	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157963732	T	T	157963732	3	4	11	1	0	0	0	0	1	0	0	0	17730	623	22	4	367	4	ZDHHC14	6	157963732	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2213915	157963732	13151335	744	28911											
SNX9	51429	broad.mit.edu	37	chr6	158353193	158353193	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcccatttcagtttgctcaGaagactaatcgtttattcct	5	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158353193	A	A	158353193	1	1	11	0	1	0	0	0	0	0	0	0	15023	957	33	4		4	SNX9	6	158353193	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	389461	158353193	12761874	745	28912											
SERAC1	84947	broad.mit.edu	37	chr6	158571537	158571537	+	Frame_Shift_Del	DEL	C	-	-													tgcacatatatatatgacttCattttttctcgttctaccac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158571537	-	-	158571537	7	5	11	1	0	1	0	1	0	0	0	0	14187	826	29	0	1807	0	SERAC1	6	158571537	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	218344	158571537	12543530	746	28913											
PNLDC1	154197	broad.mit.edu	37	chr6	160221982	160221982	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcttgctcctacgtgttgGaggaccttgcttttttctgt	11	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160221982	A	A	160221982	1	1	11	0	1	0	0	0	0	0	0	0	12243	1189	41	4		4	PNLDC1	6	160221982	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1650445	160221982	10893085	747	28914											
SLC22A2	6582	broad.mit.edu	37	chr6	160677683	160677683	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatactcatagagccaataaAgaatcctacattcactgatg	6	9	2	3	rs8177509		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160677683	G	G	160677683	3	3	11	1	0	0	0	0	1	0	0	0	14564	72	3	5	1226	5	SLC22A2	6	160677683	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	455701	160677683	10437384	748	28915											
LPA	4018	broad.mit.edu	37	chr6	160998131	160998131	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaccaatatttgagttgGctgttgctcctcttatggtt	8	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160998131	T	T	160998131	1	4	11	0	1	0	0	0	0	0	0	0	8990	1218	42	3		3	LPA	6	160998131	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	320448	160998131	10116936	749	28916											
LPA	4018	broad.mit.edu	37	chr6	160998401	160998401	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggagacaatttatgtcacAtactggacagtagcctctga	10	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160998401	G	G	160998401	1	3	11	0	1	0	0	0	0	0	0	0	8990	232	8	5		5	LPA	6	160998401	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	270	160998401	10116666	750	28917											
LPA	4018	broad.mit.edu	37	chr6	161025950	161025950	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcaaagacaatgttcctGagacattttgctatgcactg	8	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161025950	T	T	161025950	1	4	11	0	1	0	0	0	0	0	0	0	8990	1305	45	3		3	LPA	6	161025950	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	27549	161025950	10089117	751	28918											
LPA	4018	broad.mit.edu	37	chr6	161027706	161027706	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccactggaaattccaaaaCgatacacgtcacaagaggtg	9	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161027706	T	T	161027706	1	4	11	0	1	0	0	0	0	0	0	0	8990	551	19	4		4	LPA	6	161027706	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1756	161027706	10087361	752	28919											
PLG	5340	broad.mit.edu	37	chr6	161139844	161139844	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgtgactcctccccagTatccacggaacaattggctc	8	15	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161139844	A	A	161139844	3	1	11	1	0	0	0	0	1	0	0	0	12181	1638	57	5	1108	5	PLG	6	161139844	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	112138	161139844	9975223	753	28920											
PLG	5340	broad.mit.edu	37	chr6	161158002	161158002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggggggtgtgtggcccacCcacattcctggccctggcaa	14	13	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161158002	A	A	161158002	3	1	11	1	0	0	0	0	1	0	0	0	12181	623	22	2	1823	2	PLG	6	161158002	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	18158	161158002	9957065	754	28921											
MAP3K4	4216	broad.mit.edu	37	chr6	161530900	161530900	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaagcagatcaccattgcGatcaacgtcctccatgagca	7	13	3	2	rs138952496		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161530900	T	T	161530900	2	4	11	1	0	0	0	0	0	0	0	1	9344	1045	37	3		3	MAP3K4	6	161530900	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	372898	161530900	9584167	755	28922											
C6orf118	168090	broad.mit.edu	37	chr6	165714104	165714104	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggggcggcacagggggccAgtctcgggggttctgatccc	19	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165714104	G	G	165714104	1	3	11	0	1	0	0	0	0	0	0	0	2346	203	7	5		5	C6orf118	6	165714104	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	4183204	165714104	5400963	756	28923											
UNC93A	54346	broad.mit.edu	37	chr6	167711390	167711390	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaacctacatcttgtcacAtttgccgtcatctcatgtct	5	12	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167711390	G	G	167711390	1	3	11	0	1	0	0	0	0	0	0	0	17122	232	8	5		5	UNC93A	6	167711390	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1997286	167711390	3403677	757	28924											
TTLL2	83887	broad.mit.edu	37	chr6	167755004	167755004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaagaccaagacctcccCgtgtgtcctgtcagaccgtg	10	15	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167755004	A	A	167755004	3	1	11	1	0	0	0	0	1	0	0	0	16853	652	23	1	1626	1	TTLL2	6	167755004	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	43614	167755004	3360063	758	28925											
TCP10	6953	broad.mit.edu	37	chr6	167794552	167794552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagcccacatctttacgGggacgctatatttacacgac	7	12	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167794552	T	T	167794552	1	4	11	0	1	0	0	0	0	0	0	0	15832	1247	43	2		2	TCP10	6	167794552	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	39548	167794552	3320515	759	28926											
MLLT4	4301	broad.mit.edu	37	chr6	168352255	168352255	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaccagatagggctgccGtctgcgcaggtggctgctgc	15	13	1	1	rs145659193	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168352255	T	T	168352255	2	4	11	1	0	0	0	0	0	0	0	1	9722	1132	40	3		3	MLLT4	6	168352255	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	557703	168352255	2762812	760	28927											
KIF25	3834	broad.mit.edu	37	chr6	168445706	168445706	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtttttctcctaaaactGtgtttcttgtccttgcttta	5	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168445706	T	T	168445706	1	4	11	0	1	0	0	0	0	0	0	0	8363	1392	48	3		3	KIF25	6	168445706	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	93451	168445706	2669361	761	28928											
SMOC2	64094	broad.mit.edu	37	chr6	168910593	168910593	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttctttttttctcctttaAgtttttgagagtggatcaag	8	6	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168910593	C	C	168910593	5	2	11	1	0	0	0	0	0	0	1	0	14916	86	3	5	89	5	SMOC2	6	168910593	Splice_Site	SNP	A	TCGA-05-4398-01A-01D-1265-08	464887	168910593	2204474	762	28929											
PDCD2	5134	broad.mit.edu	37	chr6	170889182	170889182	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catggaatccagttcttcctCaagtgcttcacctgaaaaat	6	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170889182	T	T	170889182	3	4	11	1	0	0	0	0	1	0	0	0	11713	835	29	4	376	4	PDCD2	6	170889182	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1978589	170889182	225885	763	28930											
PRKAR1B	5575	broad.mit.edu	37	chr7	590070	590070	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggcgggagctgtgctcaGacggtgagggagatgaagct	19	7	1	4	rs140518538		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	590070	C	C	590070	2	2	11	1	0	0	0	0	0	0	0	1	12610	929	33	4		4	PRKAR1B	7	590070	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08		590070	158548593	764	28931											
PRKAR1B	5575	broad.mit.edu	37	chr7	624175	624175	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaccttgctgaggaactcctCgtacatcttgcgtttcctca	8	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	624175	T	T	624175	3	4	11	1	0	0	0	0	1	0	0	0	12610	893	31	4	422	4	PRKAR1B	7	624175	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	34105	624175	158514488	765	28932											
MAD1L1	8379	broad.mit.edu	37	chr7	2262452	2262452	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagggtcagcggggagccctCacccccacacctctctcaga	11	17	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2262452	A	A	2262452	1	1	11	0	1	0	0	0	0	0	0	0	9235	841	29	3		3	MAD1L1	7	2262452	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1638277	2262452	156876211	766	28933											
EIF3B	8662	broad.mit.edu	37	chr7	2402301	2402301	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatattttcctggagtacgcGtcccctgcccacgctgtgga	10	13	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2402301	A	A	2402301	2	1	11	1	0	0	0	0	0	0	0	1	5053	1132	40	4		4	EIF3B	7	2402301	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	139849	2402301	156736362	767	28934											
LFNG	3955	broad.mit.edu	37	chr7	2559920	2559920	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctggatctcgcgccacaAggagatggtgagccccccgc	13	15	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2559920	G	G	2559920	3	3	11	1	0	0	0	0	1	0	0	0	8809	72	3	5	703	5	LFNG	7	2559920	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	157619	2559920	156578743	768	28935											
LFNG	3955	broad.mit.edu	37	chr7	2566617	2566617	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggggcgtcagggggcctcGtggagctgcagcagggtctc	19	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2566617	C	C	2566617	1	2	11	0	1	0	0	0	0	0	0	0	8809	1160	40	4		4	LFNG	7	2566617	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	6697	2566617	156572046	769	28936											
RADIL	55698	broad.mit.edu	37	chr7	4917651	4917651	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggctggagaaggtggaGtccaggtcccggtacttgta	15	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4917651	A	A	4917651	2	1	11	1	0	0	0	0	0	0	0	1	13105	1020	36	4		4	RADIL	7	4917651	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2351034	4917651	154221012	770	28937											
ACTB	60	broad.mit.edu	37	chr7	5568741	5568741	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaaagggcgcagctccggGaggccaggaaggagggaggc	21	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5568741	C	C	5568741	1	2	11	0	1	0	0	0	0	0	0	0	193	1189	41	4		4	ACTB	7	5568741	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	651090	5568741	153569922	771	28938											
COL28A1	340267	broad.mit.edu	37	chr7	7420475	7420475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctttctttcccacatcgcCccgttctccgtgctctccct	4	20	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7420475	A	A	7420475	3	1	11	1	0	0	0	0	1	0	0	0	3718	623	22	2	1181	2	COL28A1	7	7420475	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1851734	7420475	151718188	772	28939											
ICA1	3382	broad.mit.edu	37	chr7	8167340	8167340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaatgtattttaaacCctgaaacataaagttggaat	7	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8167340	A	A	8167340	1	1	11	0	1	0	0	0	0	0	0	0	7547	638	22	2		2	ICA1	7	8167340	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	746865	8167340	150971323	773	28940											
NXPH1	30010	broad.mit.edu	37	chr7	8475303	8475303	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctgaaggaacaaagaCtcaaagaaggcaccgccaag	10	9	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8475303	A	A	8475303	1	1	11	0	1	0	0	0	0	0	0	0	10885	580	20	3		3	NXPH1	7	8475303	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	307963	8475303	150663360	774	28941											
THSD7A	221981	broad.mit.edu	37	chr7	11633280	11633280	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacatcaacatttatgatgTggaaaagcagttagactcaa	7	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11633280	A	A	11633280	1	1	11	0	1	0	0	0	0	0	0	0	16002	1711	59	5		5	THSD7A	7	11633280	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	3157977	11633280	147505383	775	28942											
DGKB	1607	broad.mit.edu	37	chr7	14620435	14620435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttctttttgttttgcaaGggaaaggggtgttgtgtact	12	4	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14620435	T	T	14620435	1	4	11	0	1	0	0	0	0	0	0	0	4506	1015	35	2		2	DGKB	7	14620435	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2987155	14620435	144518228	776	28943											
HDAC9	9734	broad.mit.edu	37	chr7	18684215	18684215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttaattatggtaagacCcattttctgaaatgagaaca	6	6	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18684215	A	A	18684215	1	1	11	0	1	0	0	0	0	0	0	0	7081	638	22	2		2	HDAC9	7	18684215	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4063780	18684215	140454448	777	28944											
HDAC9	9734	broad.mit.edu	37	chr7	18975620	18975620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatcagggatgtatgcatGcatatttttaaactaaaaaa	7	4	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18975620	T	T	18975620	1	4	11	0	1	0	0	0	0	0	0	0	7081	1334	46	3		3	HDAC9	7	18975620	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	291405	18975620	140163043	778	28945											
MACC1	346389	broad.mit.edu	37	chr7	20199950	20199950	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agattaatttttcccatagcTtaaaaattcaggacttactt	4	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20199950	A	A	20199950	1	1	11	0	1	0	0	0	0	0	0	0	9231	1624	56	5		5	MACC1	7	20199950	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1224330	20199950	138938713	779	28946											
ABCB5	340273	broad.mit.edu	37	chr7	20666195	20666195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaactgcagaagaacaGccaaaactgagaaaggaagc	10	9	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20666195	T	T	20666195	3	4	11	1	0	0	0	0	1	0	0	0	44	962	34	3	75	3	ABCB5	7	20666195	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	466245	20666195	138472468	780	28947											
ABCB5	340273	broad.mit.edu	37	chr7	20698593	20698593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccacctccctagagtgGcccaccactatcatcactat	4	17	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20698593	T	T	20698593	1	4	11	0	1	0	0	0	0	0	0	0	44	1218	42	3		3	ABCB5	7	20698593	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	32398	20698593	138440070	781	28948											
ABCB5	340273	broad.mit.edu	37	chr7	20698714	20698714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggtattcattttgacCtaatttcacctcaagtggag	7	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20698714	A	A	20698714	1	1	11	0	1	0	0	0	0	0	0	0	44	696	24	2		2	ABCB5	7	20698714	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	121	20698714	138439949	782	28949											
DNAH11	8701	broad.mit.edu	37	chr7	21750234	21750234	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagaacaagcaaatcttaaGcatgatggaccaaaatggat	9	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21750234	A	A	21750234	2	1	11	1	0	0	0	0	0	0	0	1	4639	962	34	4		4	DNAH11	7	21750234	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1051520	21750234	137388429	783	28950											
RAPGEF5	9771	broad.mit.edu	37	chr7	22349558	22349558	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatagcttaataaaataatGatgctgtgccttcaagacat	7	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22349558	A	A	22349558	1	1	11	0	1	0	0	0	0	0	0	0	13155	1305	45	4		4	RAPGEF5	7	22349558	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	599324	22349558	136789105	784	28951											
FAM126A	84668	broad.mit.edu	37	chr7	22985856	22985856	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaatgattaacaccaaaTcagttatgctttacataaat	3	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22985856	A	A	22985856	1	1	11	0	1	0	0	0	0	0	0	0	5475	1450	50	5		5	FAM126A	7	22985856	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	636298	22985856	136152807	785	28952											
IGF2BP3	10643	broad.mit.edu	37	chr7	23390963	23390963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgttccgaatggtggcaCcttcttttcctatgatggct	10	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23390963	A	A	23390963	3	1	11	1	0	0	0	0	1	0	0	0	7645	507	18	3	1135	3	IGF2BP3	7	23390963	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	405107	23390963	135747700	786	28953											
STK31	56164	broad.mit.edu	37	chr7	23775440	23775440	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaccttcagcaggcccaAggggcacttaagtgagaaaa	11	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23775440	G	G	23775440	3	3	11	1	0	0	0	0	1	0	0	0	15414	72	3	5	793	5	STK31	7	23775440	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	384477	23775440	135363223	787	28954											
MPP6	51678	broad.mit.edu	37	chr7	24689511	24689511	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtattcttgtttggcctgtGtataaagacacagctgatgc	10	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24689511	C	C	24689511	1	2	11	0	1	0	0	0	0	0	0	0	9832	1392	48	4		4	MPP6	7	24689511	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	914071	24689511	134449152	788	28955											
MPP6	51678	broad.mit.edu	37	chr7	24705184	24705184	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattttggtcactgagatgtAcaattcattaatttgattct	6	5	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24705184	G	G	24705184	1	3	11	0	1	0	0	0	0	0	0	0	9832	406	14	5		5	MPP6	7	24705184	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	15673	24705184	134433479	789	28956											
SNX10	29887	broad.mit.edu	37	chr7	26400482	26400482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaaggattacaagtacCacattggttaaagctcattt	6	6	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26400482	A	A	26400482	1	1	11	0	1	0	0	0	0	0	0	0	14995	609	21	2		2	SNX10	7	26400482	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1695298	26400482	132738181	790	28957											
TAX1BP1	8887	broad.mit.edu	37	chr7	27788319	27788319	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcaaggtaagaaagctttCtgaatatgttctccatgtaa	7	6	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27788319	A	A	27788319	1	1	11	0	1	0	0	0	0	0	0	0	15713	928	32	3		3	TAX1BP1	7	27788319	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1387837	27788319	131350344	791	28958											
TAX1BP1	8887	broad.mit.edu	37	chr7	27827131	27827131	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacaaagaaagcgtgattaCtcatttcaaagaagagattg	9	5	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27827131	G	G	27827131	3	3	11	1	0	0	0	0	1	0	0	0	15713	565	20	4	973	4	TAX1BP1	7	27827131	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	38812	27827131	131311532	792	28959											
CPVL	54504	broad.mit.edu	37	chr7	29103855	29103856	+	Intron	INS	-	A	A													ctgatcctcaggttcctggcINSagaaggggcattggaaagac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29103856	A	A	29103855	6	5	11	0	1	1	1	0	0	0	0	0	3867	725	25	0		0	CPVL	7	29103855	Intron	INS	-	TCGA-05-4398-01A-01D-1265-08	1276724	29103855	130034808	793	28960											
NEUROD6	63974	broad.mit.edu	37	chr7	31378156	31378156	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggaagtactttcatagaAggattcatacgcactgcaat	10	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31378156	C	C	31378156	3	2	11	1	0	0	0	0	1	0	0	0	10446	72	3	5	290	5	NEUROD6	7	31378156	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	2274301	31378156	127760507	794	28961											
C7orf16	10842	broad.mit.edu	37	chr7	31746724	31746724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacactaagaggtttctgGgttgccatgctcctttgtac	10	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31746724	T	T	31746724	1	4	11	0	1	0	0	0	0	0	0	0	2403	1247	43	2		2	C7orf16	7	31746724	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	368568	31746724	127391939	795	28962											
PDE1C	5137	broad.mit.edu	37	chr7	31855492	31855492	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtttccattcattatgtCattaatgccgcgaaaagagc	7	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31855492	T	T	31855492	1	4	11	0	1	0	0	0	0	0	0	0	11729	841	29	4		4	PDE1C	7	31855492	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	108768	31855492	127283171	796	28963											
PDE1C	5137	broad.mit.edu	37	chr7	31867988	31867988	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctctgcttctctgtcaccCtggaaaaataaaaggtcata	7	10	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31867988	G	G	31867988	5	3	11	1	0	0	0	0	0	0	1	0	11729	695	24	4	725	4	PDE1C	7	31867988	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	12496	31867988	127270675	797	28964											
BBS9	27241	broad.mit.edu	37	chr7	33384214	33384214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcgaccgatgttgaggtgGgaactgaccttgtcccttct	12	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33384214	A	A	33384214	3	1	11	1	0	0	0	0	1	0	0	0	1347	1233	43	4	1339	4	BBS9	7	33384214	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1516226	33384214	125754449	798	28965											
BBS9	27241	broad.mit.edu	37	chr7	33545228	33545228	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctattctggaagcggcatttCtgccgctacaagaagacact	9	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33545228	T	T	33545228	2	4	11	1	0	0	0	0	0	0	0	1	1347	912	32	4		4	BBS9	7	33545228	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	161014	33545228	125593435	799	28966											
NPSR1	387129	broad.mit.edu	37	chr7	34867094	34867094	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccctgatcatatttgggaAgaggacactgtccaacggtg	11	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34867094	G	G	34867094	3	3	11	1	0	0	0	0	1	0	0	0	10695	72	3	5	578	5	NPSR1	7	34867094	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1321866	34867094	124271569	800	28967											
SEPT7	989	broad.mit.edu	37	chr7	35912232	35912232	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accccttgtaggaaatcactGatgtaatgtatgatattaac	7	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35912232	A	A	35912232	1	1	11	0	1	0	0	0	0	0	0	0	14182	1305	45	4		4	SEPT7	7	35912232	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1045138	35912232	123226431	801	28968											
AOAH	313	broad.mit.edu	37	chr7	36571722	36571722	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagggaaagaatgatcaaaGatggtatcaaaaggcctgtg	12	5	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36571722	C	C	36571722	1	2	11	0	1	0	0	0	0	0	0	0	728	957	33	4		4	AOAH	7	36571722	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	659490	36571722	122566941	802	28969											
AOAH	313	broad.mit.edu	37	chr7	36571916	36571916	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcagttcaggaaggagtaCaactgcgcataggtcatgtc	13	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36571916	G	G	36571916	3	3	11	1	0	0	0	0	1	0	0	0	728	477	17	4	747	4	AOAH	7	36571916	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	194	36571916	122566747	803	28970											
VPS41	27072	broad.mit.edu	37	chr7	38791935	38791935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaggaacaaaagataagCcgtgacccattaaaatgaga	8	6	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38791935	A	A	38791935	1	1	11	0	1	0	0	0	0	0	0	0	17337	754	26	3		3	VPS41	7	38791935	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2220019	38791935	120346728	804	28971											
VPS41	27072	broad.mit.edu	37	chr7	38937680	38937680	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatccgagggctcctgagtCaccaccttacctcagactca	7	15	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38937680	T	T	38937680	1	4	11	0	1	0	0	0	0	0	0	0	17337	841	29	4		4	VPS41	7	38937680	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	145745	38937680	120200983	805	28972											
INHBA	3624	broad.mit.edu	37	chr7	41739824	41739824	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctccaccatctctggctgaGagttgggtacatcctttggg	11	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41739824	T	T	41739824	3	4	11	1	0	0	0	0	1	0	0	0	7811	942	33	3	1139	3	INHBA	7	41739824	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2802144	41739824	117398839	806	28973											
INHBA	3624	broad.mit.edu	37	chr7	41740001	41740001	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaagttgttgtgattgccTttttaaaaggccctgctttt	8	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41740001	C	C	41740001	1	2	11	0	1	0	0	0	0	0	0	0	7811	1624	56	5		5	INHBA	7	41740001	5'UTR	SNP	T	TCGA-05-4398-01A-01D-1265-08	177	41740001	117398662	807	28974											
URGCP	55665	broad.mit.edu	37	chr7	43916853	43916853	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtcctggctgaagccctCagccactgtgatgagctgca	12	13	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43916853	G	G	43916853	3	3	11	1	0	0	0	0	1	0	0	0	17152	835	29	4	590	4	URGCP	7	43916853	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2176852	43916853	115221810	808	28975											
GCK	2645	broad.mit.edu	37	chr7	44186253	44186253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccattacatcagcaggcaCgagggagggcccctcatgca	12	13	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44186253	A	A	44186253	1	1	11	0	1	0	0	0	0	0	0	0	6355	551	19	3		3	GCK	7	44186253	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	269400	44186253	114952410	809	28976											
NUDCD3	23386	broad.mit.edu	37	chr7	44467155	44467155	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagccgcccacccctaccCgccaaggccattacctgctt	7	19	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44467155	A	A	44467155	1	1	11	0	1	0	0	0	0	0	0	0	10819	667	23	1		1	NUDCD3	7	44467155	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	280902	44467155	114671508	810	28977											
NPC1L1	29881	broad.mit.edu	37	chr7	44575406	44575406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcctggggtcctgggctAgcccacttagctgtgtccct	13	13	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44575406	T	T	44575406	1	4	11	0	1	0	0	0	0	0	0	0	10666	435	15	5		5	NPC1L1	7	44575406	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	108251	44575406	114563257	811	28978											
NPC1L1	29881	broad.mit.edu	37	chr7	44579392	44579392	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctccctggaagttgagccAgcgctgggcattgcaaaggg	15	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44579392	G	G	44579392	3	3	11	1	0	0	0	0	1	0	0	0	10666	188	7	5	3551	5	NPC1L1	7	44579392	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	3986	44579392	114559271	812	28979											
OGDH	4967	broad.mit.edu	37	chr7	44736903	44736903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgctggtgcttcgtgcGggtccccagcgtatttgctt	12	12	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44736903	T	T	44736903	1	4	11	0	1	0	0	0	0	0	0	0	10934	1131	39	1		1	OGDH	7	44736903	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	157511	44736903	114401760	813	28980											
TNS3	64759	broad.mit.edu	37	chr7	47468168	47468168	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcaacagggaacccgCacgctgggtgcaaacagtaa	11	12	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47468168	G	G	47468168	1	3	11	0	1	0	0	0	0	0	0	0	16467	725	25	4		4	TNS3	7	47468168	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2731265	47468168	111670495	814	28981											
PKD1L1	168507	broad.mit.edu	37	chr7	47867068	47867068	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtcgggcagccaagaccTgtcagggacaagagtgctgt	15	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47867068	A	A	47867068	5	1	11	1	0	0	0	0	0	0	1	0	12059	1594	55	5	1867	5	PKD1L1	7	47867068	Splice_Site	SNP	T	TCGA-05-4398-01A-01D-1265-08	398900	47867068	111271595	815	28982											
ABCA13	154664	broad.mit.edu	37	chr7	48563921	48563921	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggaaaagagagtgtttgAaggaaggaccaatggagaca	15	3	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48563921	C	C	48563921	3	2	11	1	0	0	0	0	1	0	0	0	31	246	9	5	14172	5	ABCA13	7	48563921	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	696853	48563921	110574742	816	28983											
SEPT14	346288	broad.mit.edu	37	chr7	55929611	55929611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaagtacaaaatgcagaGttatatttgaaagatatact	7	3	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55929611	T	T	55929611	1	4	11	0	1	0	0	0	0	0	0	0	14176	1044	36	3		3	SEPT14	7	55929611	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	7365690	55929611	103209052	817	28984											
ZNF479	90827	broad.mit.edu	37	chr7	57199975	57199975	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccacccctctctcacgatGacagacccagcactcaccat	4	21	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57199975	A	A	57199975	1	1	11	0	1	0	0	0	0	0	0	0	18060	1305	45	4		4	ZNF479	7	57199975	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1270364	57199975	101938688	818	28985											
ZNF679	168417	broad.mit.edu	37	chr7	63720657	63720657	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggaggagtggcaatgccTggatcacgctcagcagaatt	13	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63720657	A	A	63720657	3	1	11	1	0	0	0	0	1	0	0	0	18213	1580	55	5	104	5	ZNF679	7	63720657	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	6520682	63720657	95418006	819	28986											
ZNF679	168417	broad.mit.edu	37	chr7	63720698	63720698	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatatagagatgtgatgttaGagaactacagaaacctggtc	10	5	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63720698	C	C	63720698	3	2	11	1	0	0	0	0	1	0	0	0	18213	943	33	4	145	4	ZNF679	7	63720698	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	41	63720698	95417965	820	28987											
CRCP	27297	broad.mit.edu	37	chr7	65579910	65579910	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctgtgaagtgtgaggttCtttgtctgctggcagctagg	15	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65579910	G	G	65579910	1	3	11	0	1	0	0	0	0	0	0	0	3884	928	32	4		4	CRCP	7	65579910	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	1859212	65579910	93558753	821	28988											
CRCP	27297	broad.mit.edu	37	chr7	65592833	65592833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcaggctgggtgcagtgGttcacgcctgtaatcccagc	12	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65592833	T	T	65592833	1	4	11	0	1	0	0	0	0	0	0	0	3884	1276	44	3		3	CRCP	7	65592833	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	12923	65592833	93545830	822	28989											
RABGEF1	27342	broad.mit.edu	37	chr7	66240233	66240233	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactccagcgggaggaagaaGaggcctttgccagcagtcag	15	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66240233	C	C	66240233	3	2	11	1	0	0	0	0	1	0	0	0	13074	943	33	4	205	4	RABGEF1	7	66240233	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	647400	66240233	92898430	823	28990											
RABGEF1	27342	broad.mit.edu	37	chr7	66273869	66273869	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattaacgtcctcttcttGtagtgctgtgctgtggcttt	10	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66273869	T	T	66273869	1	4	11	0	1	0	0	0	0	0	0	0	13074	1392	48	3		3	RABGEF1	7	66273869	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	33636	66273869	92864794	824	28991											
WBSCR17	64409	broad.mit.edu	37	chr7	70853507	70853507	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagcatatctggggaaggGatattttttctttttctttt	10	4	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70853507	T	T	70853507	1	4	11	0	1	0	0	0	0	0	0	0	17391	1189	41	3		3	WBSCR17	7	70853507	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4579638	70853507	88285156	825	28992											
WBSCR17	64409	broad.mit.edu	37	chr7	71036265	71036265	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcccttctttctccctccCtcaggaccccagccatgata	4	19	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71036265	T	T	71036265	1	4	11	0	1	0	0	0	0	0	0	0	17391	696	24	4		4	WBSCR17	7	71036265	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	182758	71036265	88102398	826	28993											
FKBP6	8468	broad.mit.edu	37	chr7	72483750	72483750	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaccacagtcagcgtgaagCagttattttctacgctacct	9	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72483750	T	T	72483750	1	4	11	0	1	0	0	0	0	0	0	0	5969	725	25	4		4	FKBP6	7	72483750	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1447485	72483750	86654913	827	28994											
LAT2	7462	broad.mit.edu	37	chr7	73631307	73631307	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcactcacacctcctccgtGccaagttctagtgggtccct	7	16	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73631307	A	A	73631307	1	1	11	0	1	0	0	0	0	0	0	0	8717	1334	46	4		4	LAT2	7	73631307	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1147557	73631307	85507356	828	28995											
RFC2	5982	broad.mit.edu	37	chr7	73649990	73649990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaatctagacaaaggagaCagaaaaggctgcttaccact	9	8	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73649990	A	A	73649990	1	1	11	0	1	0	0	0	0	0	0	0	13353	493	17	3		3	RFC2	7	73649990	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	18683	73649990	85488673	829	28996											
POM121C	100101267	broad.mit.edu	37	chr7	75050746	75050746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggcttcacaggcacagCttttcagtgtccggcccggt	11	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75050746	A	A	75050746	1	1	11	0	1	0	0	0	0	0	0	0	12335	812	28	3		3	POM121C	7	75050746	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1400756	75050746	84087917	830	28997											
SRCRB4D	136853	broad.mit.edu	37	chr7	76019533	76019533	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccaaagtgagcctcgCcaggggctgcgagggcctgg	18	12	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76019533	G	G	76019533	3	3	11	1	0	0	0	0	1	0	0	0	15255	739	26	4	160	4	SRCRB4D	7	76019533	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	968787	76019533	83119130	831	28998											
UPK3B	80761	broad.mit.edu	37	chr7	76140183	76140183	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagggacccccacgcccGtctccgtggctcaccttttg	9	20	2	0	rs111500882	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76140183	A	A	76140183	3	1	11	1	0	0	0	0	1	0	0	0	17137	1145	40	4	216	4	UPK3B	7	76140183	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	120650	76140183	82998480	832	28999											
PCLO	27445	broad.mit.edu	37	chr7	82474669	82474669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaactggatcctgctgatGtaggacctgaatgaacatga	12	8	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82474669	T	T	82474669	3	4	11	1	0	0	0	0	1	0	0	0	11677	1377	48	3	1533	3	PCLO	7	82474669	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	6334486	82474669	76663994	833	29000											
SEMA3E	9723	broad.mit.edu	37	chr7	83036465	83036465	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgagcattgttttctgccTccagtgccttctcagtaaaa	8	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83036465	A	A	83036465	3	1	11	1	0	0	0	0	1	0	0	0	14141	1551	54	5	1610	5	SEMA3E	7	83036465	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	561796	83036465	76102198	834	29001											
SEMA3E	9723	broad.mit.edu	37	chr7	83119341	83119341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactcaaaattttaaagtgGtcaatacaattaaaaaaaag	4	5	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83119341	A	A	83119341	1	1	11	0	1	0	0	0	0	0	0	0	14141	1276	44	4		4	SEMA3E	7	83119341	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	82876	83119341	76019322	835	29002											
SEMA3A	10371	broad.mit.edu	37	chr7	83634612	83634612	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaacttaatcagttaaacaTagtgttcggaaaaaagttta	6	5	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83634612	C	C	83634612	1	2	11	0	1	0	0	0	0	0	0	0	14137	1421	49	5		5	SEMA3A	7	83634612	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	515271	83634612	75504051	836	29003											
GRM3	2913	broad.mit.edu	37	chr7	86416434	86416434	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaatcaacttcacgggTaagccaagagcctttaaaca	7	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86416434	G	G	86416434	5	3	11	1	0	0	0	0	0	0	1	0	6864	1652	57	5	1332	5	GRM3	7	86416434	Splice_Site	SNP	T	TCGA-05-4398-01A-01D-1265-08	2781822	86416434	72722229	837	29004											
ABCB4	5244	broad.mit.edu	37	chr7	87043132	87043132	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaagtatcctgaaggttaCgttgataggctttaatttcc	8	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87043132	T	T	87043132	1	4	11	0	1	0	0	0	0	0	0	0	43	551	19	4		4	ABCB4	7	87043132	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	626698	87043132	72095531	838	29005											
ABCB1	5243	broad.mit.edu	37	chr7	87195392	87195392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcttcacctacctttgcCcagacagcagctgacagtcc	8	16	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87195392	A	A	87195392	3	1	11	1	0	0	0	0	1	0	0	0	40	624	22	2	3234	2	ABCB1	7	87195392	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	152260	87195392	71943271	839	29006											
ABCB1	5243	broad.mit.edu	37	chr7	87199405	87199405	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttctccttaaaatttctgtGatgataatgcaaagttttaa	6	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87199405	C	C	87199405	1	2	11	0	1	0	0	0	0	0	0	0	40	1305	45	4		4	ABCB1	7	87199405	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4013	87199405	71939258	840	29007											
ABCB1	5243	broad.mit.edu	37	chr7	87340017	87340017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatatatttgaaagaatcaCctgaagactcagaaatcaga	6	6	3	6			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87340017	A	A	87340017	1	1	11	0	1	0	0	0	0	0	0	0	40	522	18	3		3	ABCB1	7	87340017	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	140612	87340017	71798646	841	29008											
AKAP9	10142	broad.mit.edu	37	chr7	91625048	91625049	+	Frame_Shift_Ins	INS	-	A	A													acttattagaagattatcagINSaaaaagaaagaagacttcac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91625049	A	A	91625048	7	5	11	1	0	1	1	0	0	0	0	0	459	933	33	0	890	0	AKAP9	7	91625048	Frame_Shift_Ins	INS	-	TCGA-05-4398-01A-01D-1265-08	4285031	91625048	67513615	842	29009											
AKAP9	10142	broad.mit.edu	37	chr7	91641910	91641910	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaagatcaaggaacttcaGaaaatacaccagttagaact	7	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91641910	T	T	91641910	3	4	11	1	0	0	0	0	1	0	0	0	459	933	33	3	3520	3	AKAP9	7	91641910	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	16862	91641910	67496753	843	29010											
AKAP9	10142	broad.mit.edu	37	chr7	91667800	91667800	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaatatctgggggaaaagAaaatactgcatcatcaaagc	9	6	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91667800	G	G	91667800	3	3	11	1	0	0	0	0	1	0	0	0	459	246	9	5	4472	5	AKAP9	7	91667800	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	25890	91667800	67470863	844	29011											
PEX1	5189	broad.mit.edu	37	chr7	92118631	92118631	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaaattcttccagtcaTcttcactaatggatggtctt	6	10	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92118631	C	C	92118631	3	2	11	1	0	0	0	0	1	0	0	0	11830	1435	50	5	116	5	PEX1	7	92118631	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	450831	92118631	67020032	845	29012											
SAMD9	54809	broad.mit.edu	37	chr7	92732395	92732395	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagcatatccaacataatttGacttttattcaggtgatagc	6	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92732395	T	T	92732395	3	4	11	1	0	0	0	0	1	0	0	0	13937	1299	45	3	1757	3	SAMD9	7	92732395	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	613764	92732395	66406268	846	29013											
SAMD9	54809	broad.mit.edu	37	chr7	92732470	92732470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagagtgaatgatgcgtaCtccacagtagttcccacatt	8	10	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92732470	A	A	92732470	3	1	11	1	0	0	0	0	1	0	0	0	13937	565	20	3	1832	3	SAMD9	7	92732470	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	75	92732470	66406193	847	29014											
CALCR	799	broad.mit.edu	37	chr7	93065249	93065249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtagttgaataaatacacCtttggcttccttacctggaa	7	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93065249	A	A	93065249	1	1	11	0	1	0	0	0	0	0	0	0	2605	696	24	2		2	CALCR	7	93065249	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	332779	93065249	66073414	848	29015											
CALCR	799	broad.mit.edu	37	chr7	93090242	93090242	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttcttgtgcagggttaccCtttggcagccaaggctcctg	12	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93090242	G	G	93090242	3	3	11	1	0	0	0	0	1	0	0	0	2605	681	24	4	913	4	CALCR	7	93090242	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	24993	93090242	66048421	849	29016											
PPP1R9A	55607	broad.mit.edu	37	chr7	94539978	94539978	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtccaacagaggcagtActgattccttggacagcctt	9	12	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94539978	G	G	94539978	3	3	11	1	0	0	0	0	1	0	0	0	12479	391	14	5	555	5	PPP1R9A	7	94539978	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1449736	94539978	64598685	850	29017											
LMTK2	22853	broad.mit.edu	37	chr7	97832850	97832850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggggttcccgtgagcagGcctttgctgacaggagtttc	16	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97832850	T	T	97832850	1	4	11	0	1	0	0	0	0	0	0	0	8933	1218	42	3		3	LMTK2	7	97832850	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3292872	97832850	61305813	851	29018											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97935713	97935713	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaacgacaaggcaggggtTtctgtcaccgggagagctca	14	9	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97935713	G	G	97935713	1	3	11	0	1	0	0	0	0	0	0	0	1307	1856	64	5		5	BAIAP2L1	7	97935713	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	102863	97935713	61202950	852	29019											
ARPC1A	10552	broad.mit.edu	37	chr7	98951489	98951489	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctgtttctatatacataTattttcatttgctttttcct	4	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98951489	C	C	98951489	1	2	11	0	1	0	0	0	0	0	0	0	973	1421	49	5		5	ARPC1A	7	98951489	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1015776	98951489	60187174	853	29020											
CYP3A7	1551	broad.mit.edu	37	chr7	99332708	99332708	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccacggccaagtttgggatGagatccatcactactttcct	8	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99332708	A	A	99332708	2	1	11	1	0	0	0	0	0	0	0	1	4214	1277	45	4		4	CYP3A7	7	99332708	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	381219	99332708	59805955	854	29021											
TAF6	6878	broad.mit.edu	37	chr7	99707759	99707759	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggtctcccagatgggggtAcagtgccctctataacctca	11	12	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99707759	T	T	99707759	1	4	11	0	1	0	0	0	0	0	0	0	15649	406	14	5		5	TAF6	7	99707759	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	375051	99707759	59430904	855	29022											
PILRB	29990	broad.mit.edu	37	chr7	99950544	99950544	+	Intron	DEL	C	-	-													cagctcagacccaggtggggCcggggtgaggggtccaggag							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99950544	-	-	99950544	6	5	11	0	1	1	0	1	0	0	0	0	12021	754	26	0		0	PILRB	7	99950544	Intron	DEL	C	TCGA-05-4398-01A-01D-1265-08	242785	99950544	59188119	856	29023											
GIGYF1	64599	broad.mit.edu	37	chr7	100283029	100283029	+	Frame_Shift_Del	DEL	G	-	-													ccccgtttgtcccccagagtGggcccagggtgggcagtggg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100283029	-	-	100283029	7	5	11	1	0	1	0	1	0	0	0	0	6441	1348	47	0	2037	0	GIGYF1	7	100283029	Frame_Shift_Del	DEL	G	TCGA-05-4398-01A-01D-1265-08	332485	100283029	58855634	857	29024											
EPO	2056	broad.mit.edu	37	chr7	100319086	100319086	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggttggggacaggaaggacGagctggggcagagacgtggg	22	5	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100319086	A	A	100319086	1	1	11	0	1	0	0	0	0	0	0	0	5230	1073	37	4		4	EPO	7	100319086	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	36057	100319086	58819577	858	29025											
ZAN	7455	broad.mit.edu	37	chr7	100345219	100345219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggacaacctgggcccaaCtggcaggctgtttctgtcaa	11	12	3	0	rs147364349	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100345219	A	A	100345219	3	1	11	1	0	0	0	0	1	0	0	0	17640	564	20	3	1008	3	ZAN	7	100345219	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	26133	100345219	58793444	859	29026											
ZAN	7455	broad.mit.edu	37	chr7	100395410	100395410	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaataaatttatatatttAtttatttgagacagggtctt	5	2	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100395410	G	G	100395410	1	3	11	0	1	0	0	0	0	0	0	0	17640	464	16	5		5	ZAN	7	100395410	3'UTR	SNP	A	TCGA-05-4398-01A-01D-1265-08	50191	100395410	58743253	860	29027											
EPHB4	2050	broad.mit.edu	37	chr7	100416023	100416023	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttacccaaggctgccCagggaatccatggcagagct	14	12	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100416023	A	A	100416023	1	1	11	0	1	0	0	0	0	0	0	0	5219	609	21	2		2	EPHB4	7	100416023	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	20613	100416023	58722640	861	29028											
MUC17	140453	broad.mit.edu	37	chr7	100681105	100681105	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagtcctgtgatcacttcTactgaagtcagttcatctcc	6	12	5	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100681105	A	A	100681105	2	1	11	1	0	0	0	0	0	0	0	1	10068	1509	53	5		5	MUC17	7	100681105	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	265082	100681105	58457558	862	29029											
MUC17	140453	broad.mit.edu	37	chr7	100683741	100683741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaactcctgctgacaccaGcacacctgtgaccacttcta	6	15	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100683741	T	T	100683741	3	4	11	1	0	0	0	0	1	0	0	0	10068	971	34	3	9054	3	MUC17	7	100683741	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2636	100683741	58454922	863	29030											
MUC17	140453	broad.mit.edu	37	chr7	100696199	100696199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaacacccactgggcagGgcccaggtctgaagctggtg	13	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100696199	T	T	100696199	1	4	11	0	1	0	0	0	0	0	0	0	10068	1247	43	2		2	MUC17	7	100696199	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	12458	100696199	58442464	864	29031											
TRIM56	81844	broad.mit.edu	37	chr7	100732027	100732027	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggagcccagcccagccctGgggccgaatctggacggctc	15	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100732027	C	C	100732027	2	2	11	1	0	0	0	0	0	0	0	1	16655	1335	47	4		4	TRIM56	7	100732027	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	35828	100732027	58406636	865	29032											
MOGAT3	346606	broad.mit.edu	37	chr7	100841620	100841620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggacaggatgaagtccaGgctctggcggctcaccggac	15	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100841620	T	T	100841620	3	4	11	1	0	0	0	0	1	0	0	0	9790	991	35	2	517	2	MOGAT3	7	100841620	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	109593	100841620	58297043	866	29033											
EMID2	136227	broad.mit.edu	37	chr7	101091001	101091001	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacccacctacagagtgtcCtaccgcacggtgacggtgct	11	14	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101091001	G	G	101091001	2	3	11	1	0	0	0	0	0	0	0	1	5134	668	24	4		4	EMID2	7	101091001	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	249381	101091001	58047662	867	29034											
MYL10	93408	broad.mit.edu	37	chr7	101265420	101265421	+	Frame_Shift_Del	DEL	AT	-	-													tcaggaacaccgtgaagttgAtgggtccgggggcctccttc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101265421	-	-	101265420	7	5	11	1	0	1	0	1	0	0	0	0	10138	333	12	0	286	0	MYL10	7	101265420	Frame_Shift_Del	DEL	AT	TCGA-05-4398-01A-01D-1265-08	174419	101265420	57873243	868	29035											
FBXL13	222235	broad.mit.edu	37	chr7	102614193	102614193	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgcttctctgtgcatgcAcatcagtcactgatctcacc	7	13	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102614193	G	G	102614193	1	3	11	0	1	0	0	0	0	0	0	0	5766	174	6	5		5	FBXL13	7	102614193	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1348773	102614193	56524470	869	29036											
DNAJC2	27000	broad.mit.edu	37	chr7	102965044	102965044	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaatattcttacaattcttCaaaaattatgtacaacagtt	3	6	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102965044	G	G	102965044	1	3	11	0	1	0	0	0	0	0	0	0	4679	841	29	4		4	DNAJC2	7	102965044	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	350851	102965044	56173619	870	29037											
RELN	5649	broad.mit.edu	37	chr7	103130329	103130329	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttctcccttctggatcCagcggaactgtgttgcactg	9	12	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103130329	A	A	103130329	3	1	11	1	0	0	0	0	1	0	0	0	13328	595	21	2	783	2	RELN	7	103130329	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	165285	103130329	56008334	871	29038											
RELN	5649	broad.mit.edu	37	chr7	103180972	103180972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcttaacaacagacaagCacatggggtaatgcagggga	12	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103180972	A	A	103180972	1	1	11	0	1	0	0	0	0	0	0	0	13328	725	25	3		3	RELN	7	103180972	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	50643	103180972	55957691	872	29039											
RELN	5649	broad.mit.edu	37	chr7	103302073	103302073	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagggacacttacttacttAgtaatgaataattctgaaat	7	5	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103302073	T	T	103302073	1	4	11	0	1	0	0	0	0	0	0	0	13328	435	15	5		5	RELN	7	103302073	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	121101	103302073	55836590	873	29040											
MLL5	55904	broad.mit.edu	37	chr7	104722248	104722248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgactatggaaattggtgAgttcaagtctataaatgtaa	9	3	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104722248	T	T	104722248	1	4	11	0	1	0	0	0	0	0	0	0	9717	319	11	5		5	MLL5	7	104722248	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1420175	104722248	54416415	874	29041											
PIK3CG	5294	broad.mit.edu	37	chr7	106507902	106507902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtccctgtgcacatgtaCgccgcctatacctcctcttc	8	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106507902	A	A	106507902	1	1	11	0	1	0	0	0	0	0	0	0	12011	551	19	3		3	PIK3CG	7	106507902	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1785654	106507902	52630761	875	29042											
COG5	10466	broad.mit.edu	37	chr7	107204325	107204325	+	Frame_Shift_Del	DEL	C	-	-													ggccagctacagcgacgctgCcgccgccaccttccatgttg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107204325	-	-	107204325	7	5	11	1	0	1	0	1	0	0	0	0	3693	739	26	0	2564	0	COG5	7	107204325	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	696423	107204325	51934338	876	29043											
SLC26A4	5172	broad.mit.edu	37	chr7	107323753	107323753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaaggaattaaatgatcGgtttagacacaaaatcccag	8	6	0	2	rs138816005	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107323753	T	T	107323753	3	4	11	1	0	0	0	0	1	0	0	0	14633	1116	39	1	894	1	SLC26A4	7	107323753	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	119428	107323753	51814910	877	29044											
SLC26A4	5172	broad.mit.edu	37	chr7	107355824	107355824	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agataatgcagacttaaggaGaattcagttgtatcaacact	8	6	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107355824	A	A	107355824	1	1	11	0	1	0	0	0	0	0	0	0	14633	957	33	4		4	SLC26A4	7	107355824	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	32071	107355824	51782839	878	29045											
SLC26A3	1811	broad.mit.edu	37	chr7	107408247	107408247	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgaagtactgtaatctttCttcatcaaaatatgcaaaac	4	7	4	1	rs142908255	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107408247	T	T	107408247	2	4	11	1	0	0	0	0	0	0	0	1	14632	912	32	4		4	SLC26A3	7	107408247	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	52423	107408247	51730416	879	29046											
NRCAM	4897	broad.mit.edu	37	chr7	107871601	107871601	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtccacaatggtgatcctaTtaaataaaaaaataacttct	5	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107871601	C	C	107871601	1	2	11	0	1	0	0	0	0	0	0	0	10739	1508	52	5		5	NRCAM	7	107871601	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	463354	107871601	51267062	880	29047											
DOCK4	9732	broad.mit.edu	37	chr7	111484736	111484736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctaaggccacattttcCagattataacatcaagccac	4	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111484736	A	A	111484736	1	1	11	0	1	0	0	0	0	0	0	0	4729	609	21	2		2	DOCK4	7	111484736	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3613135	111484736	47653927	881	29048											
DOCK4	9732	broad.mit.edu	37	chr7	111638539	111638539	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcatttttcaagtgaacgTagctggaaggaaatataccc	10	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111638539	A	A	111638539	3	1	11	1	0	0	0	0	1	0	0	0	4729	1638	57	5	5914	5	DOCK4	7	111638539	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	153803	111638539	47500124	882	29049											
FOXP2	93986	broad.mit.edu	37	chr7	114269749	114269749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattttttgttgtttttatGggatgaatcttaatggatac	8	2	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114269749	T	T	114269749	1	4	11	0	1	0	0	0	0	0	0	0	6087	1363	47	2		2	FOXP2	7	114269749	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2631210	114269749	44868914	883	29050											
MET	4233	broad.mit.edu	37	chr7	116381097	116381097	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaggaatctctaacagCtggcatacatgtttttgttt	9	6	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116381097	T	T	116381097	1	4	11	0	1	0	0	0	0	0	0	0	9578	812	28	4		4	MET	7	116381097	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2111348	116381097	42757566	884	29051											
ASZ1	136991	broad.mit.edu	37	chr7	117067469	117067469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcctcgctctcgctactctCgcctccgccagccactggca	7	20	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117067469	T	T	117067469	3	4	11	1	0	0	0	0	1	0	0	0	1073	893	31	4	1433	4	ASZ1	7	117067469	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	686372	117067469	42071194	885	29052											
ING3	54556	broad.mit.edu	37	chr7	120595501	120595501	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggttttttattactaaGgtaggatgactgtgataaca	9	4	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120595501	A	A	120595501	1	1	11	0	1	0	0	0	0	0	0	0	7807	1015	35	4		4	ING3	7	120595501	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3528032	120595501	38543162	886	29053											
C7orf58	79974	broad.mit.edu	37	chr7	120781037	120781037	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactcctaagtgtctgtgcaAggtgcacctgtacgagcagg	12	10	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120781037	T	T	120781037	3	4	11	1	0	0	0	0	1	0	0	0	2430	72	3	5	1910	5	C7orf58	7	120781037	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	185536	120781037	38357626	887	29054											
C7orf58	79974	broad.mit.edu	37	chr7	120876814	120876814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacctgtgggttacagcCtatttcttctgactacattg	9	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120876814	A	A	120876814	3	1	11	1	0	0	0	0	1	0	0	0	2430	681	24	2	2164	2	C7orf58	7	120876814	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	95777	120876814	38261849	888	29055											
PTPRZ1	5803	broad.mit.edu	37	chr7	121637934	121637934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaacatctttcttttagGgtgctattctcaataatttg	5	7	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121637934	T	T	121637934	3	4	11	1	0	0	0	0	1	0	0	0	12922	1246	43	2	1152	2	PTPRZ1	7	121637934	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	761120	121637934	37500729	889	29056											
ASB15	142685	broad.mit.edu	37	chr7	123267198	123267198	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttggcggatgatggggcGtcggtgctgtttgaggcagc	19	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123267198	T	T	123267198	2	4	11	1	0	0	0	0	0	0	0	1	1023	1132	40	3		3	ASB15	7	123267198	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1629264	123267198	35871465	890	29057											
POT1	25913	broad.mit.edu	37	chr7	124532501	124532501	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtagaatcatgttataatCatattagcagcaaatccatg	6	6	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124532501	T	T	124532501	1	4	11	0	1	0	0	0	0	0	0	0	12355	841	29	4		4	POT1	7	124532501	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1265303	124532501	34606162	891	29058											
GRM8	2918	broad.mit.edu	37	chr7	126173711	126173711	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagaatgccactccaatttGatgatggggataagctggca	13	7	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126173711	T	T	126173711	2	4	11	1	0	0	0	0	0	0	0	1	6869	1280	45	3		3	GRM8	7	126173711	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1641210	126173711	32964952	892	29059											
PAX4	5078	broad.mit.edu	37	chr7	127253575	127253575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgaatcaggatactgccCacgctggaactctgcggaga	11	12	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127253575	A	A	127253575	3	1	11	1	0	0	0	0	1	0	0	0	11575	594	21	2	501	2	PAX4	7	127253575	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1079864	127253575	31885088	893	29060											
SND1	27044	broad.mit.edu	37	chr7	127721577	127721577	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgctcaggccgctggctcGtggttcctggcttggtccag	15	12	1	0	rs116267987	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127721577	C	C	127721577	1	2	11	0	1	0	0	0	0	0	0	0	14958	1160	40	4		4	SND1	7	127721577	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	468002	127721577	31417086	894	29061											
FAM71F1	84691	broad.mit.edu	37	chr7	128371247	128371247	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctgctgagggattatcGggatggagagtaggagaaaa	16	4	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128371247	A	A	128371247	1	1	11	0	1	0	0	0	0	0	0	0	5663	1131	39	4		4	FAM71F1	7	128371247	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	649670	128371247	30767416	895	29062											
FLNC	2318	broad.mit.edu	37	chr7	128478309	128478309	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagaagctaacctttgaccTctgacccctaggtgaccgtg	9	13	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128478309	A	A	128478309	1	1	11	0	1	0	0	0	0	0	0	0	5993	1566	54	5		5	FLNC	7	128478309	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	107062	128478309	30660354	896	29063											
FLNC	2318	broad.mit.edu	37	chr7	128480748	128480748	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtaccttgcgcccccCatgctgtcctgtctaggcca	11	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128480748	T	T	128480748	1	4	11	0	1	0	0	0	0	0	0	0	5993	609	21	4		4	FLNC	7	128480748	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2439	128480748	30657915	897	29064											
TNPO3	23534	broad.mit.edu	37	chr7	128696140	128696140	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcggaagaaatgtctggGggagctcatcggcactcaga	16	9	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128696140	T	T	128696140	1	4	11	0	1	0	0	0	0	0	0	0	16460	1247	43	2		2	TNPO3	7	128696140	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08	215392	128696140	30442523	898	29065											
C7orf45	136263	broad.mit.edu	37	chr7	129853326	129853326	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtttctgaaacagatgtctGaggataaaaaggatgaaggc	12	4	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129853326	A	A	129853326	3	1	11	1	0	0	0	0	1	0	0	0	2420	1291	45	4	196	4	C7orf45	7	129853326	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1157186	129853326	29285337	899	29066											
COPG2	26958	broad.mit.edu	37	chr7	130298512	130298512	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaacattgttccctaaTaacattcaaaaagaaaaaat	3	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130298512	C	C	130298512	1	2	11	0	1	0	0	0	0	0	0	0	3764	1421	49	5		5	COPG2	7	130298512	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	445186	130298512	28840151	900	29067											
TSGA13	114960	broad.mit.edu	37	chr7	130356638	130356638	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtggaaaaccttaacaaaGaaagttctttgtttagtaga	8	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130356638	C	C	130356638	1	2	11	0	1	0	0	0	0	0	0	0	16744	957	33	4		4	TSGA13	7	130356638	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	58126	130356638	28782025	901	29068											
TSGA13	114960	broad.mit.edu	37	chr7	130364188	130364188	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagggcagtggccttcaaAggcttatagtactgggcctg	14	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130364188	G	G	130364188	2	3	11	1	0	0	0	0	0	0	0	1	16744	59	3	5		5	TSGA13	7	130364188	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	7550	130364188	28774475	902	29069											
PLXNA4	91584	broad.mit.edu	37	chr7	131865973	131865973	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccctaaagagagttttcTtcccagtacagactcagaga	9	11	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131865973	G	G	131865973	1	3	11	0	1	0	0	0	0	0	0	0	12217	1624	56	5		5	PLXNA4	7	131865973	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1501785	131865973	27272690	903	29070											
PLXNA4	91584	broad.mit.edu	37	chr7	131870132	131870132	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaaagaccaggtcctggtgGatcttggccctgtccacctg	12	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131870132	C	C	131870132	3	2	11	1	0	0	0	0	1	0	0	0	12217	1164	41	4	2668	4	PLXNA4	7	131870132	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4159	131870132	27268531	904	29071											
CALD1	800	broad.mit.edu	37	chr7	134617840	134617840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcggcgtgaggaaagacGccaaaaacgccttcaggagg	15	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134617840	T	T	134617840	3	4	11	1	0	0	0	0	1	0	0	0	2607	1087	38	3	387	3	CALD1	7	134617840	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2747708	134617840	24520823	905	29072											
STRA8	346673	broad.mit.edu	37	chr7	134916819	134916819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttagtaactttccccCcaggactacattttttctgg	6	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134916819	A	A	134916819	1	1	11	0	1	0	0	0	0	0	0	0	15441	638	22	2		2	STRA8	7	134916819	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	298979	134916819	24221844	906	29073											
CNOT4	4850	broad.mit.edu	37	chr7	135048010	135048010	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaggtcgtcaaacaaattTagaaagcaaaaccaaaagga	7	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135048010	C	C	135048010	1	2	11	0	1	0	0	0	0	0	0	0	3653	1769	61	5		5	CNOT4	7	135048010	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	131191	135048010	24090653	907	29074											
DGKI	9162	broad.mit.edu	37	chr7	137080403	137080403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagctggcacacagcccGgttccgctggcaggcagcct	13	15	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137080403	T	T	137080403	2	4	11	1	0	0	0	0	0	0	0	1	4511	1115	39	1		1	DGKI	7	137080403	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2032393	137080403	22058260	908	29075											
DGKI	9162	broad.mit.edu	37	chr7	137154483	137154483	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaagagcaaatcacatTtttttttctctaggaacaca	7	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137154483	C	C	137154483	1	2	11	0	1	0	0	0	0	0	0	0	4511	1856	64	5		5	DGKI	7	137154483	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	74080	137154483	21984180	909	29076											
AKR1D1	6718	broad.mit.edu	37	chr7	137776546	137776546	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcatgtcccagagatggtCcgcccaaccctggagaggac	11	13	1	2	rs113371817		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137776546	A	A	137776546	2	1	11	1	0	0	0	0	0	0	0	1	473	842	30	3		3	AKR1D1	7	137776546	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	622063	137776546	21362117	910	29077											
TRIM24	8805	broad.mit.edu	37	chr7	138266582	138266582	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctggaattttatgagaaTctagcttatattaccatttt	5	5	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138266582	C	C	138266582	1	2	11	0	1	0	0	0	0	0	0	0	16622	1450	50	5		5	TRIM24	7	138266582	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	490036	138266582	20872081	911	29078											
SVOPL	136306	broad.mit.edu	37	chr7	138313080	138313080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcactggccaggataaCcccatagtaggcaaaagaga	10	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138313080	A	A	138313080	3	1	11	1	0	0	0	0	1	0	0	0	15542	507	18	3	610	3	SVOPL	7	138313080	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	46498	138313080	20825583	912	29079											
SLC37A3	84255	broad.mit.edu	37	chr7	140064334	140064334	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacagctctaaataataacaCagtatgaaaaagtaacatgc	5	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140064334	G	G	140064334	1	3	11	0	1	0	0	0	0	0	0	0	14713	493	17	4		4	SLC37A3	7	140064334	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1751254	140064334	19074329	913	29080											
WEE2	494551	broad.mit.edu	37	chr7	141424063	141424063	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcgcttcctggctaatgaGattttgcaagaggtatagat	11	6	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141424063	A	A	141424063	2	1	11	1	0	0	0	0	0	0	0	1	17472	933	33	4		4	WEE2	7	141424063	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1359729	141424063	17714600	914	29081											
OR9A4	130075	broad.mit.edu	37	chr7	141618565	141618565	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttatggagttgaggagCaggagaggaatgttttttca	15	3	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141618565	A	A	141618565	1	1	11	0	1	0	0	0	0	0	0	0	11343	725	25	3		3	OR9A4	7	141618565	5'Flank	SNP	C	TCGA-05-4398-01A-01D-1265-08	194502	141618565	17520098	915	29082											
TAS2R38	5726	broad.mit.edu	37	chr7	141672473	141672473	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtattaatgaagagctcAtttcatgtccattctcagca	8	9	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141672473	T	T	141672473	1	4	11	0	1	0	0	0	0	0	0	0	15694	232	8	5		5	TAS2R38	7	141672473	3'UTR	SNP	A	TCGA-05-4398-01A-01D-1265-08	53908	141672473	17466190	916	29083											
MGAM	8972	broad.mit.edu	37	chr7	141752054	141752054	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtcttgcaaagcctgtctCctaaagatgaatttccttat	7	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141752054	A	A	141752054	1	1	11	0	1	0	0	0	0	0	0	0	9634	870	30	3		3	MGAM	7	141752054	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	79581	141752054	17386609	917	29084											
MGAM	8972	broad.mit.edu	37	chr7	141805626	141805626	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctaacaggtattaagcatcGatgtgactgacagaaacatc	8	9	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141805626	C	C	141805626	3	2	11	1	0	0	0	0	1	0	0	0	9634	1058	37	4	5695	4	MGAM	7	141805626	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	53572	141805626	17333037	918	29085											
PRSS1	5644	broad.mit.edu	37	chr7	142460317	142460317	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agctgcagtgcctggatgctCctgtgctgagccaggctaag	14	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142460317	T	T	142460317	3	4	11	1	0	0	0	0	1	0	0	0	12720	855	30	4	504	4	PRSS1	7	142460317	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	654691	142460317	16678346	919	29086											
PRSS1	5644	broad.mit.edu	37	chr7	142460411	142460411	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttgagggaggcaaggattCatgtcaggtgatttgaccaa	13	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142460411	T	T	142460411	3	4	11	1	0	0	0	0	1	0	0	0	12720	838	29	4	598	4	PRSS1	7	142460411	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	94	142460411	16678252	920	29087											
EPHB6	2051	broad.mit.edu	37	chr7	142560926	142560926	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagtcttgcaaaagctgCagccccacccaggagcaggg	12	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142560926	A	A	142560926	1	1	11	0	1	0	0	0	0	0	0	0	5220	725	25	3		3	EPHB6	7	142560926	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	100515	142560926	16577737	921	29088											
OR6V1	346517	broad.mit.edu	37	chr7	142749302	142749302	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactcgctggctacttgcCtttctctctctattctctgt	5	14	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142749302	A	A	142749302	1	1	11	0	1	0	0	0	0	0	0	0	11305	696	24	2		2	OR6V1	7	142749302	5'Flank	SNP	C	TCGA-05-4398-01A-01D-1265-08	188376	142749302	16389361	922	29089											
PIP	5304	broad.mit.edu	37	chr7	142829235	142829235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctccagctcctgttcaGggccagccctgccaccctgc	9	19	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142829235	T	T	142829235	3	4	11	1	0	0	0	0	1	0	0	0	12030	1000	35	2	28	2	PIP	7	142829235	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	79933	142829235	16309428	923	29090											
TPK1	27010	broad.mit.edu	37	chr7	144245652	144245652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaggaataaggccacacCaatcaccctccattccagtg	6	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144245652	A	A	144245652	3	1	11	1	0	0	0	0	1	0	0	0	16528	595	21	2	194	2	TPK1	7	144245652	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1416417	144245652	14893011	924	29091											
CNTNAP2	26047	broad.mit.edu	37	chr7	146997419	146997419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttggttactaatccattGcaaaaaatgaggtttcaaaa	6	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146997419	T	T	146997419	1	4	11	0	1	0	0	0	0	0	0	0	3679	1334	46	3		3	CNTNAP2	7	146997419	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2751767	146997419	12141244	925	29092											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092811	147092811	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaaatttatacgaagtgGcacaaaggaagccgggaagt	12	5	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147092811	C	C	147092811	3	2	11	1	0	0	0	0	1	0	0	0	3679	1203	42	4	1647	4	CNTNAP2	7	147092811	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	95392	147092811	12045852	926	29093											
CNTNAP2	26047	broad.mit.edu	37	chr7	147914500	147914500	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaccagcagaactcccaccCggacctggcacaggaggaga	12	15	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147914500	T	T	147914500	3	4	11	1	0	0	0	0	1	0	0	0	3679	652	23	4	3205	4	CNTNAP2	7	147914500	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	821689	147914500	11224163	927	29094											
PDIA4	9601	broad.mit.edu	37	chr7	148701330	148701330	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcaaggcgggagggggCgtcagtgctgcaaaggccaa	18	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148701330	T	T	148701330	1	4	11	0	1	0	0	0	0	0	0	0	11764	783	27	4		4	PDIA4	7	148701330	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	786830	148701330	10437333	928	29095											
ZNF862	643641	broad.mit.edu	37	chr7	149547490	149547490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaagcccacaaggggaGctgtggcttgtggttatctt	15	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149547490	T	T	149547490	1	4	11	0	1	0	0	0	0	0	0	0	18324	986	34	3		3	ZNF862	7	149547490	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	846160	149547490	9591173	929	29096											
GIMAP4	55303	broad.mit.edu	37	chr7	150270151	150270151	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcgcggaagattaaacTtaatgaaaatctgtttgtat	8	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150270151	G	G	150270151	1	3	11	0	1	0	0	0	0	0	0	0	6445	1624	56	5		5	GIMAP4	7	150270151	3'UTR	SNP	T	TCGA-05-4398-01A-01D-1265-08	722661	150270151	8868512	930	29097											
GIMAP2	26157	broad.mit.edu	37	chr7	150384081	150384081	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaaagaaaagaaatAtaagaatttttcatgattta	5	1	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150384081	G	G	150384081	1	3	11	0	1	0	0	0	0	0	0	0	6444	464	16	5		5	GIMAP2	7	150384081	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	113930	150384081	8754582	931	29098											
GIMAP2	26157	broad.mit.edu	37	chr7	150389421	150389421	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaccacatgcaaagggccAatgtgccagcagatctgagc	12	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150389421	C	C	150389421	3	2	11	1	0	0	0	0	1	0	0	0	6444	130	5	5	53	5	GIMAP2	7	150389421	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	5340	150389421	8749242	932	29099											
GIMAP1	170575	broad.mit.edu	37	chr7	150417236	150417236	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccactgggaacagcatcctGggccagagacggttcttctc	12	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150417236	A	A	150417236	2	1	11	1	0	0	0	0	0	0	0	1	6443	1335	47	4		4	GIMAP1	7	150417236	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	27815	150417236	8721427	933	29100											
NOS3	4846	broad.mit.edu	37	chr7	150698836	150698836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaaaaccctgttgtgagGgggttggacccttgcctggg	14	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150698836	T	T	150698836	1	4	11	0	1	0	0	0	0	0	0	0	10639	1247	43	2		2	NOS3	7	150698836	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	281600	150698836	8439827	934	29101											
AGAP3	116988	broad.mit.edu	37	chr7	150840704	150840704	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtcacgtgcctctagcCtgccctgacctcgctcttct	9	16	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150840704	T	T	150840704	1	4	11	0	1	0	0	0	0	0	0	0	369	696	24	4		4	AGAP3	7	150840704	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	141868	150840704	8297959	935	29102											
GALNT11	63917	broad.mit.edu	37	chr7	151800146	151800146	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtgaataataatctaaAccattcgagccttttaaaat	6	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151800146	C	C	151800146	1	2	11	0	1	0	0	0	0	0	0	0	6271	58	2	5		5	GALNT11	7	151800146	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	959442	151800146	7338517	936	29103											
DPP6	1804	broad.mit.edu	37	chr7	154379709	154379709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattgtcatacgagtgtgGcaggtgtgaggcatcgcatc	13	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154379709	T	T	154379709	1	4	11	0	1	0	0	0	0	0	0	0	4770	1218	42	3		3	DPP6	7	154379709	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2579563	154379709	4758954	937	29104											
DPP6	1804	broad.mit.edu	37	chr7	154684244	154684244	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctacaaccagatgcaaccgAgggatttccctgccctccct	7	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154684244	T	T	154684244	1	4	11	0	1	0	0	0	0	0	0	0	4770	319	11	5		5	DPP6	7	154684244	3'UTR	SNP	A	TCGA-05-4398-01A-01D-1265-08	304535	154684244	4454419	938	29105											
PTPRN2	5799	broad.mit.edu	37	chr7	157341681	157341681	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctctggtccctcaagtgctCcagggtcgctgcgatatcaa	10	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157341681	T	T	157341681	3	4	11	1	0	0	0	0	1	0	0	0	12916	864	30	4	120	4	PTPRN2	7	157341681	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2657437	157341681	1796982	939	29106											
PTPRN2	5799	broad.mit.edu	37	chr7	157414103	157414103	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgttctcctccctctgGgccacgaacgagctgttggg	13	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157414103	A	A	157414103	2	1	11	1	0	0	0	0	0	0	0	1	12916	1219	43	4		4	PTPRN2	7	157414103	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	72422	157414103	1724560	940	29107											
PTPRN2	5799	broad.mit.edu	37	chr7	157691364	157691364	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccccttctgttactcaCcgacccgactccggtttgaa	8	16	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157691364	A	A	157691364	5	1	11	1	0	0	0	0	0	0	1	0	12916	521	18	3	1306	3	PTPRN2	7	157691364	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	277261	157691364	1447299	941	29108											
PTPRN2	5799	broad.mit.edu	37	chr7	157985049	157985049	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtcctgcgccgtatgGgtcctggcgagcacgtctga	15	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157985049	C	C	157985049	2	2	11	1	0	0	0	0	0	0	0	1	12916	1219	43	4		4	PTPRN2	7	157985049	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	293685	157985049	1153614	942	29109											
WDR60	55112	broad.mit.edu	37	chr7	158716322	158716323	+	Missense_Mutation	DNP	GG	CT	CT													tgtttgccggaacagcgcacGgctcagttgtcgtctgggat							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	158716323	CT	CT	158716322	3	2	11	1	0	0	0	0	1	0	0	0	17438	1116	39	4	2221	4	WDR60	7	158716322	Missense_Mutation	DNP	GG	TCGA-05-4398-01A-01D-1265-08	731273	158716322	422341	943	29110											
DLGAP2	9228	broad.mit.edu	37	chr8	1581246	1581246	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attttcagccttccagcgggGactctagaggcatacctgtc	10	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1581246	T	T	1581246	1	4	11	0	1	0	0	0	0	0	0	0	4600	1189	41	3		3	DLGAP2	8	1581246	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08		1581246	144782776	944	29111											
MYOM2	9172	broad.mit.edu	37	chr8	2021609	2021609	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagggttctcagggtgcaGaccttgtgtgtgcccgggga	17	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2021609	A	A	2021609	1	1	11	0	1	0	0	0	0	0	0	0	10186	957	33	4		4	MYOM2	8	2021609	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	440363	2021609	144342413	945	29112											
ANGPT2	285	broad.mit.edu	37	chr8	6360598	6360598	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaaaatagttcgagacAgttcctcaggtggactggga	12	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6360598	T	T	6360598	1	4	11	0	1	0	0	0	0	0	0	0	611	203	7	5		5	ANGPT2	8	6360598	3'UTR	SNP	A	TCGA-05-4398-01A-01D-1265-08	4338989	6360598	140003424	946	29113											
DEFA6	1671	broad.mit.edu	37	chr8	6783308	6783308	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctgttggatctaattctAgaagtgcttggttttcctct	9	8	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6783308	G	G	6783308	1	3	11	0	1	0	0	0	0	0	0	0	4426	435	15	5		5	DEFA6	8	6783308	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	422710	6783308	139580714	947	29114											
RP1L1	94137	broad.mit.edu	37	chr8	10473975	10473976	+	Missense_Mutation	DNP	CA	AG	AG													ccgtttttgtttcttgaagtCagcccagataaagtttcagc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	10473976	AG	AG	10473975	3	1	11	1	0	0	0	0	1	0	0	0	13644	813	29	3	6478	3	RP1L1	8	10473975	Missense_Mutation	DNP	CA	TCGA-05-4398-01A-01D-1265-08	3690667	10473975	135890047	948	29115											
USP17L2	377630	broad.mit.edu	37	chr8	11995480	11995480	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaaagttaacgtcttggAggccggcgccctctggagac	14	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11995480	T	T	11995480	3	4	11	1	0	0	0	0	1	0	0	0	17174	304	11	5	806	5	USP17L2	8	11995480	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1521505	11995480	134368542	949	29116											
FAM86B1	85002	broad.mit.edu	37	chr8	12049226	12049226	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacacctgtgctgcttctctCaggtcttccggagagattca	9	13	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12049226	A	A	12049226	1	1	11	0	1	0	0	0	0	0	0	0	5697	841	29	3		3	FAM86B1	8	12049226	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	53746	12049226	134314796	950	29117											
TUSC3	7991	broad.mit.edu	37	chr8	15531375	15531375	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttataagcatgaatattcTgaagtttaatccagcttaat	5	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15531375	A	A	15531375	1	1	11	0	1	0	0	0	0	0	0	0	16904	1595	55	5		5	TUSC3	8	15531375	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	3482149	15531375	130832647	951	29118											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19315840	19315840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataagagaaaggaggctttGtactcggcaggggaaatgaa	14	4	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19315840	T	T	19315840	1	4	11	0	1	0	0	0	0	0	0	0	3972	1392	48	3		3	CSGALNACT1	8	19315840	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3784465	19315840	127048182	952	29119											
INTS10	55174	broad.mit.edu	37	chr8	19681564	19681565	+	Intron	DNP	TA	AT	AT													taaaggaagacggtaataaaTagcttatttccagaattgcc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	19681565	AT	AT	19681564	1	1	11	0	1	0	0	0	0	0	0	0	7846	1421	49	5		5	INTS10	8	19681564	Intron	DNP	TA	TCGA-05-4398-01A-01D-1265-08	365724	19681564	126682458	953	29120											
LPL	4023	broad.mit.edu	37	chr8	19813334	19813334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccgagatacaatcttggTgtctcttttttacccagatg	8	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19813334	C	C	19813334	1	2	11	0	1	0	0	0	0	0	0	0	9008	1711	59	5		5	LPL	8	19813334	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	131770	19813334	126550688	954	29121											
SORBS3	10174	broad.mit.edu	37	chr8	22429318	22429318	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcctctcctaacacctctCagatacactggaccccgtga	5	18	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22429318	T	T	22429318	4	4	11	1	0	0	0	0	0	1	0	0	15043	827	29	4	1901	4	SORBS3	8	22429318	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2615984	22429318	123934704	955	29122											
ADAM28	10863	broad.mit.edu	37	chr8	24193068	24193068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatagattccaagtcaatgGcttcccttgccatcacggga	9	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24193068	T	T	24193068	3	4	11	1	0	0	0	0	1	0	0	0	246	1203	42	3	1535	3	ADAM28	8	24193068	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1763750	24193068	122170954	956	29123											
PPP2R2A	5520	broad.mit.edu	37	chr8	26212038	26212038	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtttacagcaccttccagAgccatgaaccagagtttgac	8	11	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26212038	G	G	26212038	3	3	11	1	0	0	0	0	1	0	0	0	12485	304	11	5	290	5	PPP2R2A	8	26212038	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	2018970	26212038	120151984	957	29124											
INTS9	55756	broad.mit.edu	37	chr8	28654167	28654167	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttgagagaagcttggtcCatgggctgaaaaagaacaca	11	6	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28654167	T	T	28654167	3	4	11	1	0	0	0	0	1	0	0	0	7855	594	21	4	1262	4	INTS9	8	28654167	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2442129	28654167	117709855	958	29125											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37728847	37728856	+	Frame_Shift_Del	DEL	GTCTCCGAGG	-	-													gctgagctgagactggatgtGtctccgagggtgagacccag					rs75558150	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37728856	-	-	37728847	7	5	11	1	0	1	0	1	0	0	0	0	13001	1377	48	0	390	0	RAB11FIP1	8	37728847	Frame_Shift_Del	DEL	GTCTCCGAGG	TCGA-05-4398-01A-01D-1265-08	9074680	37728847	108635175	959	29126											
FGFR1	2260	broad.mit.edu	37	chr8	38272335	38272335	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagtcgatgtggtgaatgtCccgtgcgaggccaaagtctg	15	8	1	1	rs67268517		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38272335	T	T	38272335	3	4	11	1	0	0	0	0	1	0	0	0	5920	855	30	4	549	4	FGFR1	8	38272335	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	543488	38272335	108091687	960	29127											
PLEKHA2	59339	broad.mit.edu	37	chr8	38810807	38810807	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgtctttctgttcttTccaccaggaccgagaaccac	6	14	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38810807	C	C	38810807	1	2	11	0	1	0	0	0	0	0	0	0	12151	1798	62	5		5	PLEKHA2	8	38810807	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	538472	38810807	107553215	961	29128											
ADAM2	2515	broad.mit.edu	37	chr8	39624743	39624743	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctacatgtggcaatatcacAgcatgtttctccaataaggg	8	9	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39624743	T	T	39624743	3	4	11	1	0	0	0	0	1	0	0	0	241	188	7	5	999	5	ADAM2	8	39624743	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	813936	39624743	106739279	962	29129											
IKBKB	3551	broad.mit.edu	37	chr8	42166634	42166634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggcgccccatcaccggGcctgggagatctgtgttgtt	13	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42166634	T	T	42166634	1	4	11	0	1	0	0	0	0	0	0	0	7681	1218	42	3		3	IKBKB	8	42166634	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2541891	42166634	104197388	963	29130											
SNTG1	54212	broad.mit.edu	37	chr8	51465849	51465849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcttctcagaatgagaCattcatgaaagctattctgg	9	7	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51465849	A	A	51465849	1	1	11	0	1	0	0	0	0	0	0	0	14988	493	17	3		3	SNTG1	8	51465849	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	9299215	51465849	94898173	964	29131											
PXDNL	137902	broad.mit.edu	37	chr8	52384753	52384753	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcagtatttacttgttgTgtatccaaataatctcaggt	7	7	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52384753	G	G	52384753	3	3	11	1	0	0	0	0	1	0	0	0	12956	1696	59	5	3649	5	PXDNL	8	52384753	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	918904	52384753	93979269	965	29132											
PCMTD1	115294	broad.mit.edu	37	chr8	52733173	52733173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccttttgggtggagccCtttgaggaatccccttggcc	11	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52733173	A	A	52733173	3	1	11	1	0	0	0	0	1	0	0	0	11680	681	24	2	265	2	PCMTD1	8	52733173	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	348420	52733173	93630849	966	29133											
NKAIN3	286183	broad.mit.edu	37	chr8	63769118	63769118	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagctggcttaggcactgtCattgccatggggttgtcttc	12	10	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63769118	A	A	63769118	1	1	11	0	1	0	0	0	0	0	0	0	10532	841	29	3		3	NKAIN3	8	63769118	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	11035945	63769118	82594904	967	29134											
DNAJC5B	85479	broad.mit.edu	37	chr8	66989047	66989048	+	Missense_Mutation	DNP	CC	AA	AA													atcgctgggactctacgtggCcgagcagtttggagacgaaa							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	66989048	AA	AA	66989047	3	1	11	1	0	0	0	0	1	0	0	0	4691	739	26	3	278	3	DNAJC5B	8	66989047	Missense_Mutation	DNP	CC	TCGA-05-4398-01A-01D-1265-08	3219929	66989047	79374975	968	29135											
CPA6	57094	broad.mit.edu	37	chr8	68346330	68346330	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatagggatacagtaacatCtgagcatatgcatgaaagga	11	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68346330	A	A	68346330	3	1	11	1	0	0	0	0	1	0	0	0	3826	912	32	3	341	3	CPA6	8	68346330	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1357283	68346330	78017692	969	29136											
SULF1	23213	broad.mit.edu	37	chr8	70516997	70516997	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactcagggaccgtaattcaGatcacttctcatgtacgaag	9	10	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70516997	T	T	70516997	1	4	11	0	1	0	0	0	0	0	0	0	15488	957	33	3		3	SULF1	8	70516997	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2170667	70516997	75847025	970	29137											
SULF1	23213	broad.mit.edu	37	chr8	70541706	70541706	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taattgagaaagtgccttctGaacactcaaaataatccctt	5	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70541706	A	A	70541706	1	1	11	0	1	0	0	0	0	0	0	0	15488	1305	45	4		4	SULF1	8	70541706	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	24709	70541706	75822316	971	29138											
SLCO5A1	81796	broad.mit.edu	37	chr8	70617541	70617541	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatctattctgtctcttgctCagtagtactgaggtaaaaaa	7	7	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70617541	A	A	70617541	1	1	11	0	1	0	0	0	0	0	0	0	14845	841	29	3		3	SLCO5A1	8	70617541	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	75835	70617541	75746481	972	29139											
TRPA1	8989	broad.mit.edu	37	chr8	72948757	72948757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctatggatggttatataCatgcaccccgtaatacaatt	6	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72948757	T	T	72948757	1	4	11	0	1	0	0	0	0	0	0	0	16702	493	17	4		4	TRPA1	8	72948757	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2331216	72948757	73415265	973	29140											
TRPA1	8989	broad.mit.edu	37	chr8	72975646	72975646	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaaatcaaattaatagcatCcaccaaaatagacttattta	2	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72975646	G	G	72975646	1	3	11	0	1	0	0	0	0	0	0	0	16702	870	30	4		4	TRPA1	8	72975646	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	26889	72975646	73388376	974	29141											
TRPA1	8989	broad.mit.edu	37	chr8	72983849	72983849	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatataggctctttataattAgcactaattacccttaaaaa	3	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72983849	T	T	72983849	1	4	11	0	1	0	0	0	0	0	0	0	16702	435	15	5		5	TRPA1	8	72983849	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	8203	72983849	73380173	975	29142											
CRISPLD1	83690	broad.mit.edu	37	chr8	75944444	75944444	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttacagaatcctccaggAggaaaggcattcagagtgtt	11	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75944444	T	T	75944444	2	4	11	1	0	0	0	0	0	0	0	1	3914	291	11	5		5	CRISPLD1	8	75944444	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	2960595	75944444	70419578	976	29143											
HNF4G	3174	broad.mit.edu	37	chr8	76452231	76452231	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaaccaatactggacatgGacatggcaaattacagtgaa	9	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76452231	T	T	76452231	1	4	11	0	1	0	0	0	0	0	0	0	7321	1174	41	3		3	HNF4G	8	76452231	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	507787	76452231	69911791	977	29144											
ZFHX4	79776	broad.mit.edu	37	chr8	77620383	77620383	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacttaaggaaaaaaaaagaGaaaaaacatcaaagggcagg	9	4	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77620383	A	A	77620383	1	1	11	0	1	0	0	0	0	0	0	0	17761	957	33	4		4	ZFHX4	8	77620383	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1168152	77620383	68743639	978	29145											
ZFHX4	79776	broad.mit.edu	37	chr8	77764324	77764324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcctttttgcctcattttCctatgaccccagaagcactg	6	14	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764324	A	A	77764324	3	1	11	1	0	0	0	0	1	0	0	0	17761	855	30	3	5201	3	ZFHX4	8	77764324	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	143941	77764324	68599698	979	29146											
TPD52	7163	broad.mit.edu	37	chr8	80976781	80976781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtggcactgatcgtggCagcaacatcttctccttcct	8	14	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80976781	A	A	80976781	3	1	11	1	0	0	0	0	1	0	0	0	16521	710	25	3	584	3	TPD52	8	80976781	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3212457	80976781	65387241	980	29147											
E2F5	1875	broad.mit.edu	37	chr8	86124414	86124414	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatctattagtggagatatCattgatgagttaatgtcttc	10	4	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86124414	T	T	86124414	2	4	11	1	0	0	0	0	0	0	0	1	4910	816	29	4		4	E2F5	8	86124414	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	5147633	86124414	60239608	981	29148											
CA13	377677	broad.mit.edu	37	chr8	86171659	86171659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgtttagttctgcgtgGtggtcctctcactggaagct	12	8	2	0	rs151178960	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86171659	T	T	86171659	3	4	11	1	0	0	0	0	1	0	0	0	2540	1261	44	3	255	3	CA13	8	86171659	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	47245	86171659	60192363	982	29149											
SLC7A13	157724	broad.mit.edu	37	chr8	87229801	87229801	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaaaaaaatatagtttatCaaatcaattagacttgttaa	5	3	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87229801	A	A	87229801	3	1	11	1	0	0	0	0	1	0	0	0	14809	825	29	3	343	3	SLC7A13	8	87229801	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1058142	87229801	59134221	983	29150											
CNBD1	168975	broad.mit.edu	37	chr8	87951745	87951745	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaacagtgcatttatactCctgcaatatagtaaaagtcc	5	9	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87951745	A	A	87951745	1	1	11	0	1	0	0	0	0	0	0	0	3623	870	30	3		3	CNBD1	8	87951745	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	721944	87951745	58412277	984	29151											
CNBD1	168975	broad.mit.edu	37	chr8	88365868	88365868	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatatttttttaacagaaaaGatctcaaaaacttgtttata	3	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88365868	T	T	88365868	3	4	11	1	0	0	0	0	1	0	0	0	3623	942	33	3	1195	3	CNBD1	8	88365868	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	414123	88365868	57998154	985	29152											
MMP16	4325	broad.mit.edu	37	chr8	89087062	89087062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcttttgaaatcaagctGgtttccttatttattgtctt	7	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89087062	T	T	89087062	1	4	11	0	1	0	0	0	0	0	0	0	9748	1363	47	2		2	MMP16	8	89087062	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	721194	89087062	57276960	986	29153											
MMP16	4325	broad.mit.edu	37	chr8	89180030	89180030	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggagagctgtccccatGgaaaccagatgcaaaaataa	10	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89180030	T	T	89180030	3	4	11	1	0	0	0	0	1	0	0	0	9748	1348	47	2	1430	2	MMP16	8	89180030	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	92968	89180030	57183992	987	29154											
SLC26A7	115111	broad.mit.edu	37	chr8	92301299	92301299	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtaaaccaatacctattcTtttgtgtaacagactgtgtc	6	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92301299	C	C	92301299	1	2	11	0	1	0	0	0	0	0	0	0	14636	1624	56	5		5	SLC26A7	8	92301299	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	3121269	92301299	54062723	988	29155											
SLC26A7	115111	broad.mit.edu	37	chr8	92352886	92352886	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaaactttcctaactgtAcagcaagagtgggttgaaca	8	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92352886	G	G	92352886	1	3	11	0	1	0	0	0	0	0	0	0	14636	406	14	5		5	SLC26A7	8	92352886	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	51587	92352886	54011136	989	29156											
SLC26A7	115111	broad.mit.edu	37	chr8	92381933	92381933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttgttattctttataaGtaaaagaattatgtgatttt	5	1	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92381933	T	T	92381933	1	4	11	0	1	0	0	0	0	0	0	0	14636	1044	36	3		3	SLC26A7	8	92381933	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	29047	92381933	53982089	990	29157											
TMEM67	91147	broad.mit.edu	37	chr8	94811942	94811942	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatagctgcattttgagaTatgcagtgtctgctgctctt	9	8	2	1	rs138508720		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94811942	C	C	94811942	3	2	11	1	0	0	0	0	1	0	0	0	16319	1406	49	5	2417	5	TMEM67	8	94811942	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	2430009	94811942	51552080	991	29158											
CDH17	1015	broad.mit.edu	37	chr8	95164334	95164334	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacagctgctgtttcaaaatCaagaggctgtgtaggagaaa	11	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95164334	G	G	95164334	3	3	11	1	0	0	0	0	1	0	0	0	3132	826	29	4	964	4	CDH17	8	95164334	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	352392	95164334	51199688	992	29159											
CDH17	1015	broad.mit.edu	37	chr8	95189928	95189928	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagttagttcaaaagtcaCagcaggaggattggccttaa	10	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95189928	G	G	95189928	3	3	11	1	0	0	0	0	1	0	0	0	3132	478	17	4	2386	4	CDH17	8	95189928	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	25594	95189928	51174094	993	29160											
KIAA1429	25962	broad.mit.edu	37	chr8	95505129	95505129	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaaattcttattacctaTaaattatatttgcctctcat	2	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95505129	C	C	95505129	1	2	11	0	1	0	0	0	0	0	0	0	8301	1421	49	5		5	KIAA1429	8	95505129	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	315201	95505129	50858893	994	29161											
UQCRB	7381	broad.mit.edu	37	chr8	97247751	97247751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacttaccggcctgcttaCcagccattttgaccagaaag	8	12	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97247751	A	A	97247751	3	1	11	1	0	0	0	0	1	0	0	0	17144	507	18	3	343	3	UQCRB	8	97247751	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1742622	97247751	49116271	995	29162											
MATN2	4147	broad.mit.edu	37	chr8	99019307	99019307	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgccccctcggctcctctAtgctttcgcgtgtgtgaaaa	9	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99019307	G	G	99019307	1	3	11	0	1	0	0	0	0	0	0	0	9426	464	16	5		5	MATN2	8	99019307	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1771556	99019307	47344715	996	29163											
SPAG1	6674	broad.mit.edu	37	chr8	101178126	101178126	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccctgaaagcagagctttGaggaaagataaaccagcagc	11	10	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101178126	A	A	101178126	2	1	11	1	0	0	0	0	0	0	0	1	15091	1281	45	4		4	SPAG1	8	101178126	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2158819	101178126	45185896	997	29164											
BAALC	79870	broad.mit.edu	37	chr8	104225192	104225192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatggtgtgccccgatctaCagccccaggtggaataccca	10	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104225192	A	A	104225192	3	1	11	1	0	0	0	0	1	0	0	0	1284	478	17	3	212	3	BAALC	8	104225192	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3047066	104225192	42138830	998	29165											
LRP12	29967	broad.mit.edu	37	chr8	105507492	105507492	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggagcgaagaaaaagaaCaattttctattatcagtaat	10	4	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105507492	T	T	105507492	1	4	11	0	1	0	0	0	0	0	0	0	9041	493	17	4		4	LRP12	8	105507492	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1282300	105507492	40856530	999	29166											
LRP12	29967	broad.mit.edu	37	chr8	105510050	105510051	+	Frame_Shift_Ins	INS	-	A	A													tctcctaggtcaaggcagtcINSaatgttcccatcacatttta							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105510051	A	A	105510050	7	5	11	1	0	1	1	0	0	0	0	0	9041	826	29	0	1861	0	LRP12	8	105510050	Frame_Shift_Ins	INS	-	TCGA-05-4398-01A-01D-1265-08	2558	105510050	40853972	1000	29167											
ZFPM2	23414	broad.mit.edu	37	chr8	106801053	106801053	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagctgccagtcagatgactCtcacagaagggatgtaccct	10	11	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106801053	T	T	106801053	3	4	11	1	0	0	0	0	1	0	0	0	17784	913	32	4	662	4	ZFPM2	8	106801053	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1291003	106801053	39562969	1001	29168											
ZFPM2	23414	broad.mit.edu	37	chr8	106801185	106801185	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgtgtagcccagctttaGaggtgatgggaatttatggg	15	5	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106801185	T	T	106801185	1	4	11	0	1	0	0	0	0	0	0	0	17784	957	33	3		3	ZFPM2	8	106801185	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	132	106801185	39562837	1002	29169											
RSPO2	340419	broad.mit.edu	37	chr8	108972928	108972928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccatggtttcttctaatGgtgcaaaaccatctggacat	7	9	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108972928	T	T	108972928	3	4	11	1	0	0	0	0	1	0	0	0	13821	1348	47	2	342	2	RSPO2	8	108972928	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2171743	108972928	37391094	1003	29170											
RSPO2	340419	broad.mit.edu	37	chr8	108995373	108995373	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaggacccctcaacctGgctcatcaacagagcagatg	9	12	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108995373	A	A	108995373	1	1	11	0	1	0	0	0	0	0	0	0	13821	1363	47	4		4	RSPO2	8	108995373	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	22445	108995373	37368649	1004	29171											
PKHD1L1	93035	broad.mit.edu	37	chr8	110432808	110432808	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atattcttagagcactttcaGgtgaatcagaccaaaacaaa	6	8	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110432808	C	C	110432808	3	2	11	1	0	0	0	0	1	0	0	0	12067	991	35	4	2676	4	PKHD1L1	8	110432808	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1437435	110432808	35931214	1005	29172											
PKHD1L1	93035	broad.mit.edu	37	chr8	110463175	110463175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagggcccgatggcagaaCtgcattcagtctgatcttcc	10	12	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110463175	A	A	110463175	1	1	11	0	1	0	0	0	0	0	0	0	12067	580	20	3		3	PKHD1L1	8	110463175	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	30367	110463175	35900847	1006	29173											
PKHD1L1	93035	broad.mit.edu	37	chr8	110476838	110476838	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accggatgaacaaccaccctGatgggccatcctatgacaga	9	13	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110476838	C	C	110476838	3	2	11	1	0	0	0	0	1	0	0	0	12067	1290	45	4	7971	4	PKHD1L1	8	110476838	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	13663	110476838	35887184	1007	29174											
PKHD1L1	93035	broad.mit.edu	37	chr8	110483284	110483284	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccacattaacaccttctgcGatgaaatcttctcctcaaat	4	13	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110483284	C	C	110483284	1	2	11	0	1	0	0	0	0	0	0	0	12067	1073	37	4		4	PKHD1L1	8	110483284	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	6446	110483284	35880738	1008	29175											
KCNV1	27012	broad.mit.edu	37	chr8	110984554	110984554	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacacctggacaatgcgCcccacgttctccagctcctg	7	18	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110984554	A	A	110984554	2	1	11	1	0	0	0	0	0	0	0	1	8164	726	26	3		3	KCNV1	8	110984554	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	501270	110984554	35379468	1009	29176											
CSMD3	114788	broad.mit.edu	37	chr8	113254028	113254028	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaccagctatgaaaagaaaTaaaggtgtttacaaaagttg	9	4	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113254028	A	A	113254028	1	1	11	0	1	0	0	0	0	0	0	0	3980	1421	49	5		5	CSMD3	8	113254028	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2269474	113254028	33109994	1010	29177											
CSMD3	114788	broad.mit.edu	37	chr8	113332155	113332155	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaattcatcatcttccgtCaaaatttcagcattgggcac	5	11	6	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113332155	T	T	113332155	2	4	11	1	0	0	0	0	0	0	0	1	3980	825	29	4		4	CSMD3	8	113332155	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	78127	113332155	33031867	1011	29178											
CSMD3	114788	broad.mit.edu	37	chr8	113347732	113347732	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaggattgggaaaggaggaGagatcaagattgattgtgga	16	2	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113347732	T	T	113347732	1	4	11	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113347732	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	15577	113347732	33016290	1012	29179											
CSMD3	114788	broad.mit.edu	37	chr8	113364583	113364583	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccgtggcttatcaatcattGatttgtaaaatattctgaaa	6	7	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113364583	T	T	113364583	1	4	11	0	1	0	0	0	0	0	0	0	3980	1305	45	3		3	CSMD3	8	113364583	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	16851	113364583	32999439	1013	29180											
CSMD3	114788	broad.mit.edu	37	chr8	113420618	113420618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgaattgtgatctgattaCctgaactcagtggaagtgat	10	6	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113420618	A	A	113420618	3	1	11	1	0	0	0	0	1	0	0	0	3980	507	18	3	5741	3	CSMD3	8	113420618	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	56035	113420618	32943404	1014	29181											
CSMD3	114788	broad.mit.edu	37	chr8	113648989	113648989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacgaagggtgtaaccatGcaactccatggacagtgact	11	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113648989	T	T	113648989	1	4	11	0	1	0	0	0	0	0	0	0	3980	1334	46	3		3	CSMD3	8	113648989	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	228371	113648989	32715033	1015	29182											
ENPP2	5168	broad.mit.edu	37	chr8	120630631	120630631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggagatttgacccagcCacctgtttgcctcccttttc	7	15	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120630631	A	A	120630631	1	1	11	0	1	0	0	0	0	0	0	0	5172	609	21	2		2	ENPP2	8	120630631	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6981642	120630631	25733391	1016	29183											
ENPP2	5168	broad.mit.edu	37	chr8	120631544	120631544	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catcaacccaatgcgactctCctataaggaaaaatgggtaa	7	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120631544	T	T	120631544	3	4	11	1	0	0	0	0	1	0	0	0	5172	869	30	4	2495	4	ENPP2	8	120631544	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	913	120631544	25732478	1017	29184											
COL14A1	7373	broad.mit.edu	37	chr8	121209165	121209165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttacagcattcgatgtggGctcagagaagacacgaattg	13	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121209165	T	T	121209165	3	4	11	1	0	0	0	0	1	0	0	0	3703	1203	42	3	590	3	COL14A1	8	121209165	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	577621	121209165	25154857	1018	29185											
COL14A1	7373	broad.mit.edu	37	chr8	121216051	121216051	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgatgcacacagttgtGgagagtctgaccaggactct	12	9	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121216051	T	T	121216051	2	4	11	1	0	0	0	0	0	0	0	1	3703	1335	47	2		2	COL14A1	8	121216051	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	6886	121216051	25147971	1019	29186											
COL14A1	7373	broad.mit.edu	37	chr8	121228556	121228556	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacatgtatgtaatttgacAttttaattattttctattcc	3	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121228556	C	C	121228556	1	2	11	0	1	0	0	0	0	0	0	0	3703	232	8	5		5	COL14A1	8	121228556	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	12505	121228556	25135466	1020	29187											
COL14A1	7373	broad.mit.edu	37	chr8	121295871	121295871	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatggttttctttctatgtTcaggtacttgcacccagaag	8	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121295871	A	A	121295871	1	1	11	0	1	0	0	0	0	0	0	0	3703	1798	62	5		5	COL14A1	8	121295871	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	67315	121295871	25068151	1021	29188											
COL14A1	7373	broad.mit.edu	37	chr8	121353530	121353530	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcttagctaagtgcaataTcataagtaacttgacaattt	5	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121353530	A	A	121353530	1	1	11	0	1	0	0	0	0	0	0	0	3703	1450	50	5		5	COL14A1	8	121353530	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	57659	121353530	25010492	1022	29189											
WDR67	93594	broad.mit.edu	37	chr8	124132400	124132400	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccagaacaaccaactcatCtgttttgaagttattgctac	5	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124132400	T	T	124132400	2	4	11	1	0	0	0	0	0	0	0	1	17445	903	32	4		4	WDR67	8	124132400	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2778870	124132400	22231622	1023	29190											
ATAD2	29028	broad.mit.edu	37	chr8	124383045	124383045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgatctctcacaaactaCcataaatgtcacaccttcta	2	14	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124383045	A	A	124383045	1	1	11	0	1	0	0	0	0	0	0	0	1075	522	18	3		3	ATAD2	8	124383045	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	250645	124383045	21980977	1024	29191											
WDYHV1	55093	broad.mit.edu	37	chr8	124442343	124442343	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgttctgtatgttttgGtaaagcagaagtgacctaag	11	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124442343	C	C	124442343	1	2	11	0	1	0	0	0	0	0	0	0	17470	1276	44	4		4	WDYHV1	8	124442343	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	59298	124442343	21921679	1025	29192											
FER1L6	654463	broad.mit.edu	37	chr8	125029803	125029803	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaacaatatttgcaaaCctctggaattatataaatgg	7	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125029803	T	T	125029803	1	4	11	0	1	0	0	0	0	0	0	0	5872	522	18	4		4	FER1L6	8	125029803	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	587460	125029803	21334219	1026	29193											
FER1L6	654463	broad.mit.edu	37	chr8	125058189	125058189	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacacctcataaaaaatgCcacgttgaactcactcactt	3	14	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125058189	T	T	125058189	1	4	11	0	1	0	0	0	0	0	0	0	5872	754	26	4		4	FER1L6	8	125058189	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	28386	125058189	21305833	1027	29194											
TRMT12	55039	broad.mit.edu	37	chr8	125463762	125463762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgggtgaccatggctgGgtagagcatgtggataatgg	17	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125463762	T	T	125463762	3	4	11	1	0	0	0	0	1	0	0	0	16689	1241	43	2	596	2	TRMT12	8	125463762	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	405573	125463762	20900260	1028	29195											
ASAP1	50807	broad.mit.edu	37	chr8	131128061	131128061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaacactgagcaaatccCaccttattcctagttttcaa	3	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131128061	A	A	131128061	1	1	11	0	1	0	0	0	0	0	0	0	1014	609	21	2		2	ASAP1	8	131128061	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	5664299	131128061	15235961	1029	29196											
ASAP1	50807	broad.mit.edu	37	chr8	131140239	131140239	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatcctcaataatggcttTtgtcaggtcttccaggctgt	9	10	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131140239	C	C	131140239	3	2	11	1	0	0	0	0	1	0	0	0	1014	1850	64	5	2134	5	ASAP1	8	131140239	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	12178	131140239	15223783	1030	29197											
ADCY8	114	broad.mit.edu	37	chr8	131792968	131792968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcaaaggcaaagccctggtCcttcaggatgagataggtct	11	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131792968	A	A	131792968	3	1	11	1	0	0	0	0	1	0	0	0	300	855	30	3	335	3	ADCY8	8	131792968	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	652729	131792968	14571054	1031	29198											
EFR3A	23167	broad.mit.edu	37	chr8	132958799	132958799	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattctcaaagcattaagccAtttgtagaaagctttcttca	5	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132958799	G	G	132958799	2	3	11	1	0	0	0	0	0	0	0	1	4998	204	8	5		5	EFR3A	8	132958799	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	1165831	132958799	13405223	1032	29199											
PHF20L1	51105	broad.mit.edu	37	chr8	133823337	133823337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgatggtgctgaaaaaaaGgaagactacaatgaaacagc	11	5	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133823337	T	T	133823337	3	4	11	1	0	0	0	0	1	0	0	0	11927	991	35	2	924	2	PHF20L1	8	133823337	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	864538	133823337	12540685	1033	29200											
ZFAT	57623	broad.mit.edu	37	chr8	135669873	135669874	+	Frame_Shift_Ins	INS	-	A	A													aggggaataataatctcatcINSaacattaaccccttcttcca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135669874	A	A	135669873	7	5	11	1	0	1	1	0	0	0	0	0	17758	826	29	0	3664	0	ZFAT	8	135669873	Frame_Shift_Ins	INS	-	TCGA-05-4398-01A-01D-1265-08	1846536	135669873	10694149	1034	29201											
FAM135B	51059	broad.mit.edu	37	chr8	139151289	139151289	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagcattatccctgaaggTcagctgcagtagagacccgg	11	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139151289	A	A	139151289	3	1	11	1	0	0	0	0	1	0	0	0	5495	1667	58	5	391	5	FAM135B	8	139151289	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	3481416	139151289	7212733	1035	29202											
FLJ43860	389690	broad.mit.edu	37	chr8	142469373	142469373	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgtcactatgctgctgcgGaggaggtggatgcagccacg	15	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142469373	T	T	142469373	1	4	11	0	1	0	0	0	0	0	0	0	5987	1189	41	3		3	FLJ43860	8	142469373	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3318084	142469373	3894649	1036	29203											
LY6K	54742	broad.mit.edu	37	chr8	143782017	143782017	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgccaacctgactgcgagAcaacgagatccagaggactc	11	13	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143782017	T	T	143782017	3	4	11	1	0	0	0	0	1	0	0	0	9186	272	10	5	74	5	LY6K	8	143782017	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1312644	143782017	2582005	1037	29204											
CYP11B1	1584	broad.mit.edu	37	chr8	143958031	143958031	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccattccccactgggtggtGgagagggagaaattgggccc	15	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143958031	A	A	143958031	1	1	11	0	1	0	0	0	0	0	0	0	4178	1363	47	4		4	CYP11B1	8	143958031	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	176014	143958031	2405991	1038	29205											
CYP11B2	1585	broad.mit.edu	37	chr8	143994820	143994820	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggatctgctgcacgtcGgggttccgagccagctcaaa	13	13	2	0	rs140463031		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143994820	T	T	143994820	2	4	11	1	0	0	0	0	0	0	0	1	4179	1103	39	1		1	CYP11B2	8	143994820	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	36789	143994820	2369202	1039	29206											
CYP11B2	1585	broad.mit.edu	37	chr8	143995724	143995725	+	Missense_Mutation	DNP	TG	AT	AT													ttccatagagttggccttgaTggcttctagtgacagttccg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	143995725	AT	AT	143995724	3	1	11	1	0	0	0	0	1	0	0	0	4179	1464	51	5	621	5	CYP11B2	8	143995724	Missense_Mutation	DNP	TG	TCGA-05-4398-01A-01D-1265-08	904	143995724	2368298	1040	29207											
PARP10	84875	broad.mit.edu	37	chr8	145057392	145057392	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgatcccaggggccagccaGaagtgccaccaagtggcggg	15	13	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145057392	A	A	145057392	2	1	11	1	0	0	0	0	0	0	0	1	11549	933	33	4		4	PARP10	8	145057392	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1061668	145057392	1306630	1041	29208											
SPATC1	375686	broad.mit.edu	37	chr8	145095317	145095317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactccgcggaggccccaCtgggccccagtccccagctt	11	20	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145095317	A	A	145095317	3	1	11	1	0	0	0	0	1	0	0	0	15133	565	20	3	725	3	SPATC1	8	145095317	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	37925	145095317	1268705	1042	29209											
VPS28	51160	broad.mit.edu	37	chr8	145650095	145650095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgccctgggggctgggGcgcaccgagaccacgtctgc	16	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145650095	A	A	145650095	1	1	11	0	1	0	0	0	0	0	0	0	17326	1218	42	4		4	VPS28	8	145650095	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	554778	145650095	713927	1043	29210											
FREM1	158326	broad.mit.edu	37	chr9	14797585	14797585	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcccatctgacaattggatTgtaaaatcatcagcaaggct	7	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797585	A	A	14797585	2	1	11	1	0	0	0	0	0	0	0	1	6104	1799	63	5		5	FREM1	9	14797585	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08		14797585	126415846	1044	29211											
C9orf93	203238	broad.mit.edu	37	chr9	15593956	15593956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatctataggtaaggagaGcctctttgtacatttaaact	7	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15593956	T	T	15593956	1	4	11	0	1	0	0	0	0	0	0	0	2532	986	34	3		3	C9orf93	9	15593956	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	796371	15593956	125619475	1045	29212											
BNC2	54796	broad.mit.edu	37	chr9	16419108	16419108	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgcacttgtgcatttctCtcaaatgcacagttttgtag	7	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16419108	T	T	16419108	3	4	11	1	0	0	0	0	1	0	0	0	1481	913	32	4	124	4	BNC2	9	16419108	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	825152	16419108	124794323	1046	29213											
CNTLN	54875	broad.mit.edu	37	chr9	17466925	17466925	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtttactaacttgtactttActttaggcagataggcagta	8	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17466925	T	T	17466925	1	4	11	0	1	0	0	0	0	0	0	0	3671	406	14	5		5	CNTLN	9	17466925	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1047817	17466925	123746506	1047	29214											
IFNB1	3456	broad.mit.edu	37	chr9	21077760	21077760	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacaggagcttctgacactGaaaattgctgcttctttgta	8	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21077760	T	T	21077760	3	4	11	1	0	0	0	0	1	0	0	0	7616	1299	45	3	458	3	IFNB1	9	21077760	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3610835	21077760	120135671	1048	29215											
NOL6	65083	broad.mit.edu	37	chr9	33468330	33468330	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattggtacctggtggtaagTagaggcagtgacatcagcac	13	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33468330	A	A	33468330	3	1	11	1	0	0	0	0	1	0	0	0	10620	1638	57	5	2211	5	NOL6	9	33468330	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	12390570	33468330	107745101	1049	29216											
UBAP2	55833	broad.mit.edu	37	chr9	33927878	33927878	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagaggctgttcgcggtgTtcatgctactggacaggctg	15	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33927878	C	C	33927878	3	2	11	1	0	0	0	0	1	0	0	0	16963	1725	60	5	1111	5	UBAP2	9	33927878	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	459548	33927878	107285553	1050	29217											
FAM75A6	389730	broad.mit.edu	37	chr9	43625488	43625488	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccatgaggtcatgtagctCctgggaagcccgcatgttcc	12	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43625488	A	A	43625488	4	1	11	1	0	0	0	0	0	1	0	0	5674	864	30	3	836	3	FAM75A6	9	43625488	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	9697610	43625488	97587943	1051	29218											
ANKRD20A3	441425	broad.mit.edu	37	chr9	67968379	67968379	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttctgtacaagtagaaatGagttctgctatttccaaagt	8	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67968379	A	A	67968379	3	1	11	1	0	0	0	0	1	0	0	0	649	1290	45	4	7060	4	ANKRD20A3	9	67968379	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	24342891	67968379	73245052	1052	29219											
CBWD6	644019	broad.mit.edu	37	chr9	69205514	69205514	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccagctcactggagtctCctccagatcacagagctcat	7	15	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69205514	T	T	69205514	3	4	11	1	0	0	0	0	1	0	0	0	2742	864	30	4	171	4	CBWD6	9	69205514	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1237135	69205514	72007917	1053	29220											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69423642	69423642	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttctgtacaagtagaaatGagttctgctatttccaaagt	8	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69423642	A	A	69423642	3	1	11	1	0	0	0	0	1	0	0	0	650	1290	45	4	1996	4	ANKRD20A4	9	69423642	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	218128	69423642	71789789	1054	29221											
SMC5	23137	broad.mit.edu	37	chr9	72965329	72965329	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacggagagtgtttgaaaTggttgtaaatactgcctgta	12	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72965329	G	G	72965329	3	3	11	1	0	0	0	0	1	0	0	0	14900	1464	51	5	3201	5	SMC5	9	72965329	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	3541687	72965329	68248102	1055	29222											
RORB	6096	broad.mit.edu	37	chr9	77257434	77257434	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcggcagcagcagagtgggGaggcagaagcccttgccagg	18	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77257434	T	T	77257434	4	4	11	1	0	0	0	0	0	1	0	0	13640	1175	41	3	354	3	RORB	9	77257434	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4292105	77257434	63955997	1056	29223											
TRPM6	140803	broad.mit.edu	37	chr9	77376931	77376931	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacttttaatcttacagatCttcatcaatttctcctcctt	1	11	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77376931	T	T	77376931	2	4	11	1	0	0	0	0	0	0	0	1	16715	912	32	4		4	TRPM6	9	77376931	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	119497	77376931	63836500	1057	29224											
GCNT1	2650	broad.mit.edu	37	chr9	79118035	79118035	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacaacctggaaacggagagGatgccatcccataaagaaga	10	9	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79118035	A	A	79118035	2	1	11	1	0	0	0	0	0	0	0	1	6362	1165	41	4		4	GCNT1	9	79118035	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1741104	79118035	62095396	1058	29225											
PRUNE2	158471	broad.mit.edu	37	chr9	79465437	79465437	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcccttcatcatttagctGatgcaggttaatttcatccc	5	12	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79465437	C	C	79465437	3	2	11	1	0	0	0	0	1	0	0	0	12747	1299	45	4	9048	4	PRUNE2	9	79465437	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	347402	79465437	61747994	1059	29226											
VPS13A	23230	broad.mit.edu	37	chr9	79835952	79835952	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatggattattaatgcaaatGgagttgggtaaaaaggaagt	12	1	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79835952	C	C	79835952	1	2	11	0	1	0	0	0	0	0	0	0	17316	1363	47	4		4	VPS13A	9	79835952	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	370515	79835952	61377479	1060	29227											
VPS13A	23230	broad.mit.edu	37	chr9	79955575	79955575	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctccccttactccaatttTgttttagtttcatgaatctt	3	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79955575	C	C	79955575	1	2	11	0	1	0	0	0	0	0	0	0	17316	1827	63	5		5	VPS13A	9	79955575	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	119623	79955575	61257856	1061	29228											
FLJ46321	389763	broad.mit.edu	37	chr9	84607685	84607685	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaatatgctttccatggAgaatgtggggaattatcagg	11	6	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84607685	G	G	84607685	3	3	11	1	0	0	0	0	1	0	0	0	5990	304	11	5	2314	5	FLJ46321	9	84607685	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	4652110	84607685	56605746	1062	29229											
SLC28A3	64078	broad.mit.edu	37	chr9	86912205	86912205	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccagcatctgtgtactcCagaaaagtctgagttaaaga	9	9	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86912205	T	T	86912205	2	4	11	1	0	0	0	0	0	0	0	1	14647	581	21	4		4	SLC28A3	9	86912205	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2304520	86912205	54301226	1063	29230											
C9orf170	401535	broad.mit.edu	37	chr9	89771610	89771610	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctcttgatagatgtcacTcgggaagaccatgaaaacag	9	9	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89771610	C	C	89771610	2	2	11	1	0	0	0	0	0	0	0	1	2495	1538	54	5		5	C9orf170	9	89771610	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	2859405	89771610	51441821	1064	29231											
SUSD3	203328	broad.mit.edu	37	chr9	95841860	95841860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagcgggcccagccaggCgcacgacaaccacagcttca	12	16	1	1	rs149501399	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95841860	T	T	95841860	3	4	11	1	0	0	0	0	1	0	0	0	15527	768	27	4	547	4	SUSD3	9	95841860	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	6070250	95841860	45371571	1065	29232											
ERP44	23071	broad.mit.edu	37	chr9	102814692	102814692	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctagacttcctattgaggTacttacagtgctgatcacaa	7	9	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102814692	A	A	102814692	1	1	11	0	1	0	0	0	0	0	0	0	5285	1653	57	5		5	ERP44	9	102814692	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	6972832	102814692	38398739	1066	29233											
GRIN3A	116443	broad.mit.edu	37	chr9	104432860	104432860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccactagcccagtccagtGcccatttttccatgctccat	5	17	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104432860	T	T	104432860	3	4	11	1	0	0	0	0	1	0	0	0	6849	1319	46	3	1541	3	GRIN3A	9	104432860	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1618168	104432860	36780571	1067	29234											
CYLC2	1539	broad.mit.edu	37	chr9	105765459	105765459	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatcatggaatcagcaaCactttgccctgttatttccc	5	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105765459	T	T	105765459	3	4	11	1	0	0	0	0	1	0	0	0	4175	478	17	4	104	4	CYLC2	9	105765459	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1332599	105765459	35447972	1068	29235											
C9orf6	54942	broad.mit.edu	37	chr9	111701527	111701527	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgtaagatttactgctcaGatggtgaagaatatactgtg	10	5	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111701527	C	C	111701527	3	2	11	1	0	0	0	0	1	0	0	0	2514	942	33	4	327	4	C9orf6	9	111701527	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	5936068	111701527	29511904	1069	29236											
C9orf5	23731	broad.mit.edu	37	chr9	111808480	111808480	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgtaatcccagcaagcaaGagccatacccgtgtgcatgc	10	13	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111808480	A	A	111808480	1	1	11	0	1	0	0	0	0	0	0	0	2512	957	33	4		4	C9orf5	9	111808480	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	106953	111808480	29404951	1070	29237											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112694329	112694329	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtaagtcctggggacctttgGacgctaggatggtccaaggg	16	8	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112694329	C	C	112694329	1	2	11	0	1	0	0	0	0	0	0	0	11504	1189	41	4		4	PALM2-AKAP2	9	112694329	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	885849	112694329	28519102	1071	29238											
MUSK	4593	broad.mit.edu	37	chr9	113490978	113490978	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattaacagaagaaagtgaAcccgaacaagatactaaagg	8	6	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113490978	C	C	113490978	1	2	11	0	1	0	0	0	0	0	0	0	10083	40	2	5		5	MUSK	9	113490978	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	796649	113490978	27722453	1072	29239											
C9orf84	158401	broad.mit.edu	37	chr9	114454850	114454850	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatataaataatgatgctTatctatatggaaagaaggca	7	3	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114454850	C	C	114454850	1	2	11	0	1	0	0	0	0	0	0	0	2526	1769	61	5		5	C9orf84	9	114454850	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	963872	114454850	26758581	1073	29240											
C9orf91	203197	broad.mit.edu	37	chr9	117405346	117405346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagcatgtccttcccctGgtgcctaagccctttttcct	7	15	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117405346	T	T	117405346	1	4	11	0	1	0	0	0	0	0	0	0	2531	1363	47	2		2	C9orf91	9	117405346	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2950496	117405346	23808085	1074	29241											
TLR4	7099	broad.mit.edu	37	chr9	120476798	120476798	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaacacttacctggagtggGaggacagtgtcctggggcgg	18	8	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120476798	T	T	120476798	4	4	11	1	0	0	0	0	0	1	0	0	16076	1175	41	3	2402	3	TLR4	9	120476798	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3071452	120476798	20736633	1075	29242											
PTGS1	5742	broad.mit.edu	37	chr9	125141116	125141116	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacatgactacatcagctggGagtctttctccaacgtgagc	9	12	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125141116	T	T	125141116	4	4	11	1	0	0	0	0	0	1	0	0	12861	1175	41	3	433	3	PTGS1	9	125141116	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4664318	125141116	16072315	1076	29243											
GOLGA2	2801	broad.mit.edu	37	chr9	131020133	131020133	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttcctctaccctctccttCaggtctgccttctcctgcat	5	17	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131020133	G	G	131020133	2	3	11	1	0	0	0	0	0	0	0	1	6616	813	29	4		4	GOLGA2	9	131020133	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	5879017	131020133	10193298	1077	29244											
CERCAM	51148	broad.mit.edu	37	chr9	131196681	131196681	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgggccccttggtgtcActtacagctacctcggacgg	11	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131196681	T	T	131196681	1	4	11	0	1	0	0	0	0	0	0	0	3296	174	6	5		5	CERCAM	9	131196681	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	176548	131196681	10016750	1078	29245											
PKN3	29941	broad.mit.edu	37	chr9	131479051	131479051	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actgcgagaagcggatcctgGaggctgtgggctgcacaggg	18	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131479051	C	C	131479051	3	2	11	1	0	0	0	0	1	0	0	0	12076	1175	41	4	1896	4	PKN3	9	131479051	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	282370	131479051	9734380	1079	29246											
TBC1D13	54662	broad.mit.edu	37	chr9	131553833	131553833	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctctgggctccctgggcAggaccgttgggaatcatcct	13	13	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131553833	G	G	131553833	1	3	11	0	1	0	0	0	0	0	0	0	15721	203	7	5		5	TBC1D13	9	131553833	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	74782	131553833	9659598	1080	29247											
LAMC3	10319	broad.mit.edu	37	chr9	133967067	133967067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaatcccagcagcaggagCtgcagatccagggcttcgag	14	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133967067	A	A	133967067	3	1	11	1	0	0	0	0	1	0	0	0	8688	796	28	3	4731	3	LAMC3	9	133967067	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2413234	133967067	7246364	1081	29248											
CEL	1056	broad.mit.edu	37	chr9	135940545	135940545	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgaggagatcgccacacgCggaaacgtcatcgtggtcac	14	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135940545	T	T	135940545	2	4	11	1	0	0	0	0	0	0	0	1	3239	755	27	4		4	CEL	9	135940545	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1973478	135940545	5272886	1082	29249											
SURF6	6838	broad.mit.edu	37	chr9	136198874	136198874	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccgtgcgcttctcccacCggcgctgccgctgcgccctg	13	20	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136198874	T	T	136198874	3	4	11	1	0	0	0	0	1	0	0	0	15524	652	23	4	172	4	SURF6	9	136198874	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	258329	136198874	5014557	1083	29250											
COL5A1	1289	broad.mit.edu	37	chr9	137677084	137677084	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctcctgtctccaccctggGttctctctgctgttcctatg	9	15	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137677084	C	C	137677084	1	2	11	0	1	0	0	0	0	0	0	0	3728	1276	44	4		4	COL5A1	9	137677084	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1478210	137677084	3536347	1084	29251											
FCN1	2219	broad.mit.edu	37	chr9	137801797	137801797	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtcggcgtaccaccaggcTccttggaacttctcagcaca	9	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137801797	A	A	137801797	2	1	11	1	0	0	0	0	0	0	0	1	5848	1538	54	5		5	FCN1	9	137801797	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	124713	137801797	3411634	1085	29252											
PAEP	5047	broad.mit.edu	37	chr9	138454790	138454790	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctggcatgctagccaCgctctcccagaggcggctct	12	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138454790	T	T	138454790	1	4	11	0	1	0	0	0	0	0	0	0	11476	551	19	4		4	PAEP	9	138454790	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	652993	138454790	2758641	1086	29253											
KCNT1	57582	broad.mit.edu	37	chr9	138606571	138606571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaacgacgacaggtagGgaccgggcgcggggtggggg	21	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138606571	T	T	138606571	1	4	11	0	1	0	0	0	0	0	0	0	8161	1247	43	2		2	KCNT1	9	138606571	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	151781	138606571	2606860	1087	29254											
ANAPC2	29882	broad.mit.edu	37	chr9	140075363	140075364	+	Missense_Mutation	DNP	CG	AA	AA													tgatgatgtccgatgaacgcCgcttggagctcgacttccct							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140075364	AA	AA	140075363	3	1	11	1	0	0	0	0	1	0	0	0	603	652	23	1	1005	1	ANAPC2	9	140075363	Missense_Mutation	DNP	CG	TCGA-05-4398-01A-01D-1265-08	1468792	140075363	1138068	1088	29255											
TUBAL3	79861	broad.mit.edu	37	chr10	5446826	5446826	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgagctttatcacagGgcccggaaatgactccacct	9	14	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5446826	T	T	5446826	1	4	11	0	1	0	0	0	0	0	0	0	16877	1247	43	2		2	TUBAL3	10	5446826	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08		5446826	130087921	1089	29256											
CELF2	10659	broad.mit.edu	37	chr10	11047317	11047317	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtttgagcatacttctgAactggcttttgttgagacta	10	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11047317	C	C	11047317	1	2	11	0	1	0	0	0	0	0	0	0	3246	261	9	5		5	CELF2	10	11047317	5'UTR	SNP	A	TCGA-05-4398-01A-01D-1265-08	5600491	11047317	124487430	1090	29257											
SEC61A2	55176	broad.mit.edu	37	chr10	12206397	12206397	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctattatttaccagtattttGaaatatttgttaaagaacag	5	4	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12206397	A	A	12206397	3	1	11	1	0	0	0	0	1	0	0	0	14114	1291	45	4	1421	4	SEC61A2	10	12206397	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1159080	12206397	123328350	1091	29258											
CAMK1D	57118	broad.mit.edu	37	chr10	12870705	12870705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccctctgacacctggcaGtgggaagcagggtgagaatt	14	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12870705	T	T	12870705	1	4	11	0	1	0	0	0	0	0	0	0	2623	1044	36	3		3	CAMK1D	10	12870705	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	664308	12870705	122664042	1092	29259											
CDNF	441549	broad.mit.edu	37	chr10	14870272	14870273	+	Splice_Site	INS	-	T	T													ttcaagaattctttacatacINStggaaggaacaaataaatat							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14870273	T	T	14870272	8	5	11	1	0	1	1	0	0	0	1	0	3198	579	20	0	460	0	CDNF	10	14870272	Splice_Site	INS	-	TCGA-05-4398-01A-01D-1265-08	1999567	14870272	120664475	1093	29260											
DCLRE1C	64421	broad.mit.edu	37	chr10	14976668	14976668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaaaaacacgggcacaccCagatgataaccctgttcctc	6	14	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14976668	A	A	14976668	1	1	11	0	1	0	0	0	0	0	0	0	4329	609	21	2		2	DCLRE1C	10	14976668	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	106396	14976668	120558079	1094	29261											
ITGA8	8516	broad.mit.edu	37	chr10	15559167	15559167	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttttcttgtcatgcctcaGgggtcttgtcatttgtcagc	9	9	6	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15559167	A	A	15559167	3	1	11	1	0	0	0	0	1	0	0	0	7952	1000	35	4	13	4	ITGA8	10	15559167	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	582499	15559167	119975580	1095	29262											
ITGA8	8516	broad.mit.edu	37	chr10	15760582	15760582	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctctagggttcactaaacGtcttccttcagttaactgag	7	10	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15760582	C	C	15760582	1	2	11	0	1	0	0	0	0	0	0	0	7952	1160	40	4		4	ITGA8	10	15760582	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	201415	15760582	119774165	1096	29263											
ST8SIA6	338596	broad.mit.edu	37	chr10	17373458	17373458	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgggatttcttttttgctTtccacctcgtaactcatatt	5	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17373458	C	C	17373458	2	2	11	1	0	0	0	0	0	0	0	1	15354	1838	64	5		5	ST8SIA6	10	17373458	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	1612876	17373458	118161289	1097	29264											
MRC1	4360	broad.mit.edu	37	chr10	18129791	18129791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaagtcatctagacgccCcgaagacgtttattatctca	6	10	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18129791	A	A	18129791	1	1	11	0	1	0	0	0	0	0	0	0	9850	638	22	2		2	MRC1	10	18129791	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	756333	18129791	117404956	1098	29265											
SLC39A12	221074	broad.mit.edu	37	chr10	18331687	18331687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggatgatgtttctcctGcaaaactttggattgatcct	8	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18331687	T	T	18331687	2	4	11	1	0	0	0	0	0	0	0	1	14729	1306	46	3		3	SLC39A12	10	18331687	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	201896	18331687	117203060	1099	29266											
CACNB2	783	broad.mit.edu	37	chr10	18816463	18816463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggcatacacttctatcCcctttgattagaccaataac	6	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18816463	A	A	18816463	1	1	11	0	1	0	0	0	0	0	0	0	2579	638	22	2		2	CACNB2	10	18816463	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	484776	18816463	116718284	1100	29267											
ARMC3	219681	broad.mit.edu	37	chr10	23297664	23297664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaagtaaaaatgccttGtaagctctaaatgcaaatgt	7	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23297664	T	T	23297664	1	4	11	0	1	0	0	0	0	0	0	0	956	1392	48	3		3	ARMC3	10	23297664	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4481201	23297664	112237083	1101	29268											
MSRB2	22921	broad.mit.edu	37	chr10	23399293	23399293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagaccaaacctccagGttcttactgctttgtttcat	8	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23399293	T	T	23399293	1	4	11	0	1	0	0	0	0	0	0	0	9982	1276	44	3		3	MSRB2	10	23399293	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	101629	23399293	112135454	1102	29269											
GPR158	57512	broad.mit.edu	37	chr10	25701168	25701168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacactgtggttttatttGgaactttcaggaaggggtcc	12	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25701168	T	T	25701168	1	4	11	0	1	0	0	0	0	0	0	0	6728	1363	47	2		2	GPR158	10	25701168	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2301875	25701168	109833579	1103	29270											
GPR158	57512	broad.mit.edu	37	chr10	25861766	25861766	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggaaaacatccgatcaccTcatcttcaatatgtgcctca	7	12	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25861766	G	G	25861766	3	3	11	1	0	0	0	0	1	0	0	0	6728	1551	54	5	1729	5	GPR158	10	25861766	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	160598	25861766	109672981	1104	29271											
GAD2	2572	broad.mit.edu	37	chr10	26581701	26581701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcaaaatcatgccctcCaatggcaattcctgattgaa	7	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26581701	A	A	26581701	1	1	11	0	1	0	0	0	0	0	0	0	6240	609	21	2		2	GAD2	10	26581701	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	719935	26581701	108953046	1105	29272											
PTCHD3	374308	broad.mit.edu	37	chr10	27700774	27700774	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaacagaatgatgagaaTgtatgccaggtgaaacacag	11	6	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27700774	A	A	27700774	3	1	11	1	0	0	0	0	1	0	0	0	12840	1464	51	5	1141	5	PTCHD3	10	27700774	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	1119073	27700774	107833973	1106	29273											
BMS1	9790	broad.mit.edu	37	chr10	43315903	43315903	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctacatatttggtgcctGaggctctgtggatttcccct	10	10	1	1	rs3982203		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43315903	C	C	43315903	1	2	11	0	1	0	0	0	0	0	0	0	1478	1305	45	4		4	BMS1	10	43315903	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	15615129	43315903	92218844	1107	29274											
BMS1	9790	broad.mit.edu	37	chr10	43318782	43318782	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttctagccagtgtgacgAgaggctggagtcaggtctct	14	9	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43318782	T	T	43318782	1	4	11	0	1	0	0	0	0	0	0	0	1478	319	11	5		5	BMS1	10	43318782	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2879	43318782	92215965	1108	29275											
CXCL12	6387	broad.mit.edu	37	chr10	44871437	44871437	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcttctgtcgcttcttttTtcctatcttttcttttttcc	2	12	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44871437	C	C	44871437	1	2	11	0	1	0	0	0	0	0	0	0	4113	1850	64	5		5	CXCL12	10	44871437	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1552655	44871437	90663310	1109	29276											
CXCL12	6387	broad.mit.edu	37	chr10	44873158	44873158	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttaaaattgcatttgattCtgtaaagacttgtcttttgc	6	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44873158	A	A	44873158	1	1	11	0	1	0	0	0	0	0	0	0	4113	928	32	3		3	CXCL12	10	44873158	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1721	44873158	90661589	1110	29277											
C10orf72	196740	broad.mit.edu	37	chr10	50315879	50315879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatcttcaccatcaaggCctcctgggagtcgaaggagt	12	11	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50315879	A	A	50315879	3	1	11	1	0	0	0	0	1	0	0	0	1626	739	26	3	896	3	C10orf72	10	50315879	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5442721	50315879	85218868	1111	29278											
CHAT	1103	broad.mit.edu	37	chr10	50830205	50830205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctggacaggtaggactGggagggtggtgccctgttcc	17	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50830205	T	T	50830205	1	4	11	0	1	0	0	0	0	0	0	0	3344	1363	47	2		2	CHAT	10	50830205	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	514326	50830205	84704542	1112	29279											
CHAT	1103	broad.mit.edu	37	chr10	50863202	50863202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgccgattccaggagggaCgcgtggacaacatcagatcg	13	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50863202	A	A	50863202	3	1	11	1	0	0	0	0	1	0	0	0	3344	536	19	3	1786	3	CHAT	10	50863202	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	32997	50863202	84671545	1113	29280											
OGDHL	55753	broad.mit.edu	37	chr10	50953624	50953624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaattggggaatatctgGgtagggcacacccactggga	14	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50953624	T	T	50953624	1	4	11	0	1	0	0	0	0	0	0	0	10935	1247	43	2		2	OGDHL	10	50953624	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	90422	50953624	84581123	1114	29281											
AGAP7	653268	broad.mit.edu	37	chr10	51465342	51465342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctttttattggcatgagGagaggggggcgggttgagct	17	4	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51465342	T	T	51465342	3	4	11	1	0	0	0	0	1	0	0	0	373	1174	41	3	881	3	AGAP7	10	51465342	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	511718	51465342	84069405	1115	29282											
NCOA4	8031	broad.mit.edu	37	chr10	51584632	51584632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagacttcttccagagcctGcaatttcttcaataatgtcg	7	10	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51584632	T	T	51584632	3	4	11	1	0	0	0	0	1	0	0	0	10326	1319	46	3	809	3	NCOA4	10	51584632	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	119290	51584632	83950115	1116	29283											
DKK1	22943	broad.mit.edu	37	chr10	54074333	54074333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgctatcaagaacctgcccCcaccgctgggcggcgctgcg	12	17	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54074333	A	A	54074333	3	1	11	1	0	0	0	0	1	0	0	0	4584	623	22	2	141	2	DKK1	10	54074333	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2489701	54074333	81460414	1117	29284											
PCDH15	65217	broad.mit.edu	37	chr10	55586972	55586972	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatttctggtttggttttgGctattatttttcaacttaac	6	5	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55586972	C	C	55586972	1	2	11	0	1	0	0	0	0	0	0	0	11605	1218	42	4		4	PCDH15	10	55586972	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1512639	55586972	79947775	1118	29285											
PCDH15	65217	broad.mit.edu	37	chr10	55839091	55839091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacagggagcatactcacCccatctggcctgccatctga	8	15	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55839091	A	A	55839091	2	1	11	1	0	0	0	0	0	0	0	1	11605	637	22	2		2	PCDH15	10	55839091	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	252119	55839091	79695656	1119	29286											
PCDH15	65217	broad.mit.edu	37	chr10	56367613	56367613	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgccatgaggcctactgtgAgcaagacactgctaatcagg	11	10	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56367613	T	T	56367613	1	4	11	0	1	0	0	0	0	0	0	0	11605	319	11	5		5	PCDH15	10	56367613	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	528522	56367613	79167134	1120	29287											
ZWINT	11130	broad.mit.edu	37	chr10	58120017	58120017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggagccaggaccagaccCtggcttctgaaaggctcgct	13	12	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58120017	A	A	58120017	1	1	11	0	1	0	0	0	0	0	0	0	18378	696	24	2		2	ZWINT	10	58120017	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1752404	58120017	77414730	1121	29288											
BICC1	80114	broad.mit.edu	37	chr10	60548154	60548154	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatagcgggacaaccagcaGgagtagaatctgcccgagtt	12	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60548154	C	C	60548154	3	2	11	1	0	0	0	0	1	0	0	0	1433	1001	35	4	593	4	BICC1	10	60548154	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2428137	60548154	74986593	1122	29289											
BICC1	80114	broad.mit.edu	37	chr10	60577385	60577385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctgacaggaagcaatgGctgtaacttaaatagctctt	9	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60577385	T	T	60577385	3	4	11	1	0	0	0	0	1	0	0	0	1433	1203	42	3	2671	3	BICC1	10	60577385	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	29231	60577385	74957362	1123	29290											
ANK3	288	broad.mit.edu	37	chr10	61844360	61844360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttttgtgaacaaggtacCtcaatatctttgcttcttgc	7	8	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61844360	A	A	61844360	3	1	11	1	0	0	0	0	1	0	0	0	622	695	24	2	9420	2	ANK3	10	61844360	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1266975	61844360	73690387	1124	29291											
CTNNA3	29119	broad.mit.edu	37	chr10	68525985	68525985	+	Intron	DEL	C	-	-													gagaatgggagcctcattctCctggactttagtgagttaca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68525985	-	-	68525985	6	5	11	0	1	1	0	1	0	0	0	0	4048	870	30	0		0	CTNNA3	10	68525985	Intron	DEL	C	TCGA-05-4398-01A-01D-1265-08	6681625	68525985	67008762	1125	29292											
HK1	3098	broad.mit.edu	37	chr10	71103759	71103759	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctggtaagtctgtcacCcagagattgaaccctgaggg	13	10	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71103759	T	T	71103759	1	4	11	0	1	0	0	0	0	0	0	0	7257	638	22	4		4	HK1	10	71103759	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2577774	71103759	64430988	1126	29293											
COL13A1	1305	broad.mit.edu	37	chr10	71683578	71683578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagcaggtgtcgatggCcaggttggccccccagggca	17	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71683578	A	A	71683578	2	1	11	1	0	0	0	0	0	0	0	1	3702	726	26	3		3	COL13A1	10	71683578	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	579819	71683578	63851169	1127	29294											
UNC5B	219699	broad.mit.edu	37	chr10	73050706	73050706	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatgcggcgctgtatgcGgggctcgtggtggccatctt	19	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73050706	T	T	73050706	2	4	11	1	0	0	0	0	0	0	0	1	17118	1103	39	1		1	UNC5B	10	73050706	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1367128	73050706	62484041	1128	29295											
CDH23	64072	broad.mit.edu	37	chr10	73330613	73330613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatcatcacagatgtccagGacatggaccccatcttcatc	6	14	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73330613	T	T	73330613	3	4	11	1	0	0	0	0	1	0	0	0	3138	1174	41	3	717	3	CDH23	10	73330613	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	279907	73330613	62204134	1129	29296											
CDH23	64072	broad.mit.edu	37	chr10	73462174	73462174	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgtgaggcctaggctGcttcctggaggggcctttgg	18	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73462174	C	C	73462174	1	2	11	0	1	0	0	0	0	0	0	0	3138	1334	46	4		4	CDH23	10	73462174	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	131561	73462174	62072573	1130	29297											
CDH23	64072	broad.mit.edu	37	chr10	73468968	73468968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcatcctggaggccatcGgtatgcaccagtcccgcacc	10	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73468968	T	T	73468968	3	4	11	1	0	0	0	0	1	0	0	0	3138	1130	39	1	3629	1	CDH23	10	73468968	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	6794	73468968	62065779	1131	29298											
PLAU	5328	broad.mit.edu	37	chr10	75671409	75671409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgatgctgcccaaggaCctctgatcagcaccagggga	12	12	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75671409	A	A	75671409	1	1	11	0	1	0	0	0	0	0	0	0	12117	522	18	3		3	PLAU	10	75671409	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2202441	75671409	59863338	1132	29299											
VCL	7414	broad.mit.edu	37	chr10	75842254	75842254	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattggcctccatagactccAaactgaaccaggccaaaggt	8	13	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75842254	G	G	75842254	3	3	11	1	0	0	0	0	1	0	0	0	17266	131	5	5	852	5	VCL	10	75842254	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	170845	75842254	59692493	1133	29300											
ZMIZ1	57178	broad.mit.edu	37	chr10	81053264	81053264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacgccctcggggatgagcGgccctcccatgggcatgaac	14	14	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81053264	T	T	81053264	3	4	11	1	0	0	0	0	1	0	0	0	17822	1116	39	1	1114	1	ZMIZ1	10	81053264	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	5211010	81053264	54481483	1134	29301											
PLAC9	219348	broad.mit.edu	37	chr10	81903902	81903902	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accgcactggaccgccagctGctctcttaggacctagctga	10	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81903902	C	C	81903902	1	2	11	0	1	0	0	0	0	0	0	0	12112	1334	46	4		4	PLAC9	10	81903902	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	850638	81903902	53630845	1135	29302											
MAT1A	4143	broad.mit.edu	37	chr10	82045298	82045298	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggcattggggtcttgctTgagatgggcatccagcactg	14	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82045298	A	A	82045298	4	1	11	1	0	0	0	0	0	1	0	0	9421	1821	63	5	1080	5	MAT1A	10	82045298	Nonsense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	141396	82045298	53489449	1136	29303											
NRG3	10718	broad.mit.edu	37	chr10	84738815	84738815	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctaggtggaattgtgggaCcagcatatcagcaactcgaa	13	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84738815	T	T	84738815	3	4	11	1	0	0	0	0	1	0	0	0	10744	507	18	4	1720	4	NRG3	10	84738815	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2693517	84738815	50795932	1137	29304											
LRIT2	340745	broad.mit.edu	37	chr10	85982459	85982459	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtggaaagaaaaacaaaaCagctgtgcatttatctgata	10	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85982459	T	T	85982459	1	4	11	0	1	0	0	0	0	0	0	0	9035	493	17	4		4	LRIT2	10	85982459	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1243644	85982459	49552288	1138	29305											
PTEN	5728	broad.mit.edu	37	chr10	89711767	89711767	+	Intron	SNP	A	G	G													taaggtcaaatttctaatgtAtatatgttcttaaatggcta							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89711767	G	G	89711767	1	3	11	0	1	0	0	0	0	0	0	0	12844	464	16	5		5	PTEN	10	89711767	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	3729308	89711767	45822980	1139	29306	176	2									
PTEN	5728	broad.mit.edu	37	chr10	89711769	89711769	+	Intron	SNP	A	G	G													aggtcaaatttctaatgtatAtatgttcttaaatggctacg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89711769	G	G	89711769	1	3	11	0	1	0	0	0	0	0	0	0	12844	464	16	5		5	PTEN	10	89711769	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2	89711769	45822978	1140	29307	176	2									
KIF20B	9585	broad.mit.edu	37	chr10	91522499	91522499	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatttacacctttacagccAaacaaaatggcagtgaaaca	5	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91522499	T	T	91522499	2	4	11	1	0	0	0	0	0	0	0	1	8357	117	5	5		5	KIF20B	10	91522499	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	1810730	91522499	44012248	1141	29308											
PLCE1	51196	broad.mit.edu	37	chr10	95791988	95791988	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatgggagccaacgtctGtcagaagcccagtggtatcc	12	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95791988	T	T	95791988	2	4	11	1	0	0	0	0	0	0	0	1	12129	1364	48	3		3	PLCE1	10	95791988	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	4269489	95791988	39742759	1142	29309											
PLCE1	51196	broad.mit.edu	37	chr10	95930865	95930865	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatacaagatttggaatgGctctcaagtaaatatctgtt	7	6	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95930865	A	A	95930865	1	1	11	0	1	0	0	0	0	0	0	0	12129	1218	42	4		4	PLCE1	10	95930865	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	138877	95930865	39603882	1143	29310											
PIK3AP1	118788	broad.mit.edu	37	chr10	98388154	98388154	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcatggctatgacttaCcttctaaaaacttgcggatc	7	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98388154	A	A	98388154	5	1	11	1	0	0	0	0	0	0	1	0	12003	521	18	3	981	3	PIK3AP1	10	98388154	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	2457289	98388154	37146593	1144	29311											
PIK3AP1	118788	broad.mit.edu	37	chr10	98469379	98469379	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctctggctcatcgtcacaGgtgagctcctgccaatgggc	12	13	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98469379	A	A	98469379	2	1	11	1	0	0	0	0	0	0	0	1	12003	987	35	4		4	PIK3AP1	10	98469379	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	81225	98469379	37065368	1145	29312											
ZDHHC16	84287	broad.mit.edu	37	chr10	99213631	99213631	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccccaccccactgcctccTgctgctcaggcctgggggta	11	18	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99213631	A	A	99213631	1	1	11	0	1	0	0	0	0	0	0	0	17732	1595	55	5		5	ZDHHC16	10	99213631	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	744252	99213631	36321116	1146	29313											
PYROXD2	84795	broad.mit.edu	37	chr10	100154820	100154820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatcgtgtgtgatgtgcCtggctcggttcctggctcac	15	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100154820	A	A	100154820	1	1	11	0	1	0	0	0	0	0	0	0	12975	696	24	2		2	PYROXD2	10	100154820	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	941189	100154820	35379927	1147	29314											
SFXN3	81855	broad.mit.edu	37	chr10	102797064	102797064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagggaggagctttgagGggggtcacccttcacagttc	16	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102797064	T	T	102797064	1	4	11	0	1	0	0	0	0	0	0	0	14309	1247	43	2		2	SFXN3	10	102797064	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2642244	102797064	32737683	1148	29315											
CYP17A1	1586	broad.mit.edu	37	chr10	104593791	104593791	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttctgctctatcacctAccttgtaattttcaagtatt	3	11	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104593791	G	G	104593791	5	3	11	1	0	0	0	0	0	0	1	0	4180	405	14	5	791	5	CYP17A1	10	104593791	Splice_Site	SNP	A	TCGA-05-4398-01A-01D-1265-08	1796727	104593791	30940956	1149	29316											
SORCS3	22986	broad.mit.edu	37	chr10	106602650	106602650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagattcttaaggagccaccCtggcttggctcacatgagaa	11	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106602650	A	A	106602650	1	1	11	0	1	0	0	0	0	0	0	0	15046	696	24	2		2	SORCS3	10	106602650	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2008859	106602650	28932097	1150	29317											
SORCS3	22986	broad.mit.edu	37	chr10	106675737	106675737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactcctgctgggtagctGtgctgattagggccagaggt	15	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106675737	T	T	106675737	1	4	11	0	1	0	0	0	0	0	0	0	15046	1392	48	3		3	SORCS3	10	106675737	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	73087	106675737	28859010	1151	29318											
SORCS3	22986	broad.mit.edu	37	chr10	106970900	106970900	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattttcctgacagtgactAtgggtatgagagacatgggg	13	6	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106970900	C	C	106970900	3	2	11	1	0	0	0	0	1	0	0	0	15046	449	16	5	2333	5	SORCS3	10	106970900	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	295163	106970900	28563847	1152	29319											
SORCS3	22986	broad.mit.edu	37	chr10	106970934	106970934	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catggggagagccagtgtgtCccagctttctggtacaatcc	12	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106970934	T	T	106970934	2	4	11	1	0	0	0	0	0	0	0	1	15046	842	30	4		4	SORCS3	10	106970934	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	34	106970934	28563813	1153	29320											
SORCS1	114815	broad.mit.edu	37	chr10	108431126	108431126	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatgatacatgcttccccCtgtaagcagagaaggatcac	8	13	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108431126	T	T	108431126	5	4	11	1	0	0	0	0	0	0	1	0	15044	695	24	4	1726	4	SORCS1	10	108431126	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	1460192	108431126	27103621	1154	29321											
SHOC2	8036	broad.mit.edu	37	chr10	112764372	112764372	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttacagagtcttttAtcaagtcttgtgaaactgaa	6	5	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112764372	G	G	112764372	2	3	11	1	0	0	0	0	0	0	0	1	14400	446	16	5		5	SHOC2	10	112764372	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	4333246	112764372	22770375	1155	29322											
GFRA1	2674	broad.mit.edu	37	chr10	118030298	118030298	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccgcctgccttcggggaGggacacggggtggggtgggg	23	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118030298	A	A	118030298	1	1	11	0	1	0	0	0	0	0	0	0	6411	1015	35	4		4	GFRA1	10	118030298	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	5265926	118030298	17504449	1156	29323											
BTBD16	118663	broad.mit.edu	37	chr10	124090663	124090663	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgtgaataaaactaaAaaacattctctttgcgtttc	6	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124090663	T	T	124090663	1	4	11	0	1	0	0	0	0	0	0	0	1550	29	1	5		5	BTBD16	10	124090663	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	6060365	124090663	11444084	1157	29324											
GPR123	84435	broad.mit.edu	37	chr10	134940764	134940764	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtcagcggaggggtcccCtttatcatctgtggggtcac	13	12	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134940764	T	T	134940764	2	4	11	1	0	0	0	0	0	0	0	1	6702	668	24	4		4	GPR123	10	134940764	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	10850101	134940764	593983	1158	29325											
TUBGCP2	10844	broad.mit.edu	37	chr10	135106116	135106116	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcgcctggctgtccccTgtgtagctgaagctcctgtc	11	15	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135106116	G	G	135106116	2	3	11	1	0	0	0	0	0	0	0	1	16892	1567	55	5		5	TUBGCP2	10	135106116	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	165352	135106116	428631	1159	29326											
CALY	50632	broad.mit.edu	37	chr10	135139522	135139522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctccgtgccgtgcttgcGgctcagcgggtaggccccga	15	15	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135139522	T	T	135139522	3	4	11	1	0	0	0	0	1	0	0	0	2621	1116	39	1	194	1	CALY	10	135139522	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	33406	135139522	395225	1160	29327											
MUC2	4583	broad.mit.edu	37	chr11	1082257	1082257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcacgggggtcccgggccCcgctgaagttccgatccccc	12	18	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1082257	A	A	1082257	1	1	11	0	1	0	0	0	0	0	0	0	10069	638	22	2		2	MUC2	11	1082257	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08		1082257	133924259	1161	29328											
MUC2	4583	broad.mit.edu	37	chr11	1097313	1097313	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctacaatggcctgtccttCtccgtcaggctgccctacca	7	17	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1097313	A	A	1097313	3	1	11	1	0	0	0	0	1	0	0	0	10069	912	32	3	6859	3	MUC2	11	1097313	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	15056	1097313	133909203	1162	29329											
RRM1	6240	broad.mit.edu	37	chr11	4132861	4132861	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttatttgttgaagatcAatggaaaaggtgagaaatga	12	2	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4132861	C	C	4132861	3	2	11	1	0	0	0	0	1	0	0	0	13792	130	5	5	500	5	RRM1	11	4132861	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	3035548	4132861	130873655	1163	29330											
RRM1	6240	broad.mit.edu	37	chr11	4159367	4159367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattttaaatattggtgtGgaatgtctagtattctcaca	8	4	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4159367	T	T	4159367	1	4	11	0	1	0	0	0	0	0	0	0	13792	1363	47	2		2	RRM1	11	4159367	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	26506	4159367	130847149	1164	29331											
OR52K1	390036	broad.mit.edu	37	chr11	4511052	4511052	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcgtgagtatgtgctcagtCtattccagagaaagaacatg	10	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4511052	A	A	4511052	3	1	11	1	0	0	0	0	1	0	0	0	11217	912	32	3	924	3	OR52K1	11	4511052	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	351685	4511052	130495464	1165	29332											
OR52R1	119695	broad.mit.edu	37	chr11	4825233	4825233	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggaagcagatagccacGtagcagtccagggccatagc	14	10	0	1	rs75407816	byFrequency;by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4825233	T	T	4825233	4	4	11	1	0	0	0	0	0	1	0	0	11225	1140	40	3	572	3	OR52R1	11	4825233	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	314181	4825233	130181283	1166	29333											
OR51G1	79324	broad.mit.edu	37	chr11	4945727	4945727	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggggctgatctattaGccttttctactgggtctagg	15	7	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4945727	T	T	4945727	1	4	11	0	1	0	0	0	0	0	0	0	11192	986	34	3		3	OR51G1	11	4945727	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08	120494	4945727	130060789	1167	29334											
OR51B2	79345	broad.mit.edu	37	chr11	5345399	5345399	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatgcttgatgaggtagagGagcatgccattgcccagaag	13	8	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5345399	T	T	5345399	2	4	11	1	0	0	0	0	0	0	0	1	11183	1161	41	3		3	OR51B2	11	5345399	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	399672	5345399	129661117	1168	29335											
UBQLN3	50613	broad.mit.edu	37	chr11	5530285	5530285	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtcatcaatgagctgagtCacaaactcaggcacagacac	10	11	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5530285	A	A	5530285	2	1	11	1	0	0	0	0	0	0	0	1	17024	813	29	3		3	UBQLN3	11	5530285	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	184886	5530285	129476231	1169	29336											
OR56B1	387748	broad.mit.edu	37	chr11	5758106	5758106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttctttgtgggcatggaGtctggtatcctactctgcat	10	10	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5758106	T	T	5758106	3	4	11	1	0	0	0	0	1	0	0	0	11231	1020	36	3	362	3	OR56B1	11	5758106	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	227821	5758106	129248410	1170	29337											
OR56A5	390084	broad.mit.edu	37	chr11	5989222	5989222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctgcacagtatctgagtCgagaagaaagtatggggata	13	6	1	3	rs150470399	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5989222	A	A	5989222	3	1	11	1	0	0	0	0	1	0	0	0	11230	884	31	3	440	3	OR56A5	11	5989222	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	231116	5989222	129017294	1171	29338											
OR56A5	390084	broad.mit.edu	37	chr11	5989550	5989550	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtagtacaggggctggtGcagagaggcttccagataga	16	7	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5989550	A	A	5989550	3	1	11	1	0	0	0	0	1	0	0	0	11230	1319	46	4	768	4	OR56A5	11	5989550	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	328	5989550	129016966	1172	29339											
C11orf42	160298	broad.mit.edu	37	chr11	6231041	6231041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggcaaccagttaacttcTgaccctaagtccctgaccta	7	13	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6231041	C	C	6231041	1	2	11	0	1	0	0	0	0	0	0	0	1653	1595	55	5		5	C11orf42	11	6231041	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	241491	6231041	128775475	1173	29340											
ZNF215	7762	broad.mit.edu	37	chr11	6976880	6976880	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccatttcctattgaagcAgtttcccttctagttcatgg	6	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6976880	T	T	6976880	1	4	11	0	1	0	0	0	0	0	0	0	17897	203	7	5		5	ZNF215	11	6976880	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	745839	6976880	128029636	1174	29341											
NLRP14	338323	broad.mit.edu	37	chr11	7063623	7063623	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccattctgacttaggtgaTggaacagaatacagaaatag	10	6	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7063623	C	C	7063623	2	2	11	1	0	0	0	0	0	0	0	1	10571	1461	51	5		5	NLRP14	11	7063623	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	86743	7063623	127942893	1175	29342											
PPFIBP2	8495	broad.mit.edu	37	chr11	7642305	7642305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagtatgagggccttgtGgggagggtctgcattccaac	16	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7642305	T	T	7642305	1	4	11	0	1	0	0	0	0	0	0	0	12410	1363	47	2		2	PPFIBP2	11	7642305	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	578682	7642305	127364211	1176	29343											
SBF2	81846	broad.mit.edu	37	chr11	9980644	9980644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgggcttaggatcaaaGgttgctatcactccgaagtc	12	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9980644	T	T	9980644	1	4	11	0	1	0	0	0	0	0	0	0	13971	1015	35	2		2	SBF2	11	9980644	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2338339	9980644	125025872	1177	29344											
TEAD1	7003	broad.mit.edu	37	chr11	12883843	12883843	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaaactcaggacaggcaaGacgaggaccagaaaacaggt	11	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12883843	C	C	12883843	3	2	11	1	0	0	0	0	1	0	0	0	15860	933	33	4	255	4	TEAD1	11	12883843	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2903199	12883843	122122673	1178	29345											
ABCC8	6833	broad.mit.edu	37	chr11	17457472	17457472	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagtaacagggccaacatgCcaaaaagagagacccctgca	11	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17457472	G	G	17457472	1	3	11	0	1	0	0	0	0	0	0	0	58	754	26	4		4	ABCC8	11	17457472	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4573629	17457472	117549044	1179	29346											
LDHAL6A	160287	broad.mit.edu	37	chr11	18487393	18487393	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattttcaacttttagaTtcgggggtacactgtgtagg	10	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18487393	A	A	18487393	1	1	11	0	1	0	0	0	0	0	0	0	8771	1508	52	5		5	LDHAL6A	11	18487393	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1029921	18487393	116519123	1180	29347											
SLC6A5	9152	broad.mit.edu	37	chr11	20639565	20639565	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccctggagcagctgaggGgctgtgacttcactttcatc	12	12	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20639565	C	C	20639565	1	2	11	0	1	0	0	0	0	0	0	0	14801	1247	43	4		4	SLC6A5	11	20639565	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2152172	20639565	114366951	1181	29348											
NELL1	4745	broad.mit.edu	37	chr11	21555752	21555752	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgaagctttcaattcAtttgaattctggaaaatatg	7	4	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21555752	T	T	21555752	1	4	11	0	1	0	0	0	0	0	0	0	10428	232	8	5		5	NELL1	11	21555752	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	916187	21555752	113450764	1182	29349											
NELL1	4745	broad.mit.edu	37	chr11	21592478	21592478	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatagctgtcagcagtgtCggtgtctggtatgttggctt	13	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21592478	A	A	21592478	2	1	11	1	0	0	0	0	0	0	0	1	10428	875	31	3		3	NELL1	11	21592478	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	36726	21592478	113414038	1183	29350											
ANO5	203859	broad.mit.edu	37	chr11	22272253	22272253	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacttttacctaaacacctaTcactgttcaataactttgct	3	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22272253	C	C	22272253	1	2	11	0	1	0	0	0	0	0	0	0	700	1450	50	5		5	ANO5	11	22272253	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	679775	22272253	112734263	1184	29351											
KCNA4	3739	broad.mit.edu	37	chr11	30033354	30033354	+	Frame_Shift_Del	DEL	T	-	-													caaagaggagccaaatctgcTttttaaattcattctcgggg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30033354	-	-	30033354	7	5	11	1	0	1	0	1	0	0	0	0	8075	1609	56	0	1093	0	KCNA4	11	30033354	Frame_Shift_Del	DEL	T	TCGA-05-4398-01A-01D-1265-08	7761101	30033354	104973162	1185	29352											
MPPED2	744	broad.mit.edu	37	chr11	30439186	30439186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaccacggggtcctttgGgggagataatgcacatggta	13	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30439186	T	T	30439186	1	4	11	0	1	0	0	0	0	0	0	0	9836	1247	43	2		2	MPPED2	11	30439186	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	405832	30439186	104567330	1186	29353											
WT1	7490	broad.mit.edu	37	chr11	32417981	32417981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagagtaagaggaagggaGgctttaagccacatgtgaac	14	6	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32417981	T	T	32417981	1	4	11	0	1	0	0	0	0	0	0	0	17535	1015	35	2		2	WT1	11	32417981	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1978795	32417981	102588535	1187	29354											
ABTB2	25841	broad.mit.edu	37	chr11	34218874	34218874	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaaggaagatccctaccgTtcattgttcaaggtcattct	7	12	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34218874	C	C	34218874	2	2	11	1	0	0	0	0	0	0	0	1	103	1722	60	5		5	ABTB2	11	34218874	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	1800893	34218874	100787642	1188	29355											
TRAF6	7189	broad.mit.edu	37	chr11	36513966	36513966	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttgcttctgctcacagcatCcatgaataactctattatat	4	10	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36513966	G	G	36513966	1	3	11	0	1	0	0	0	0	0	0	0	16569	870	30	4		4	TRAF6	11	36513966	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2295092	36513966	98492550	1189	29356											
LRRC4C	57689	broad.mit.edu	37	chr11	40136679	40136679	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgactgttccatttggAgtaatccaagatacagatgt	9	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40136679	G	G	40136679	2	3	11	1	0	0	0	0	0	0	0	1	9095	291	11	5		5	LRRC4C	11	40136679	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	3622713	40136679	94869837	1190	29357											
CD82	3732	broad.mit.edu	37	chr11	44640631	44640631	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgtccatctgcttgtgCcggcacgtccattccgaaga	10	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44640631	A	A	44640631	4	1	11	1	0	0	0	0	0	1	0	0	3070	747	26	3	789	3	CD82	11	44640631	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	4503952	44640631	90365885	1191	29358											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45927281	45927281	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctggagtagctgtgcagCcccgccctctgcgtccccca	10	18	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45927281	T	T	45927281	1	4	11	0	1	0	0	0	0	0	0	0	9376	754	26	4		4	MAPK8IP1	11	45927281	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	1286650	45927281	89079235	1192	29359											
PTPRJ	5795	broad.mit.edu	37	chr11	48185982	48185982	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccattgatcgtctcatctAccagatagagaatgagaaca	8	9	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48185982	G	G	48185982	3	3	11	1	0	0	0	0	1	0	0	0	12912	391	14	5	3873	5	PTPRJ	11	48185982	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	2258701	48185982	86820534	1193	29360											
OR4A47	403253	broad.mit.edu	37	chr11	48511074	48511074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagttcccacatgactGtggttgtcttcttctttgtt	8	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48511074	T	T	48511074	3	4	11	1	0	0	0	0	1	0	0	0	11136	1377	48	3	732	3	OR4A47	11	48511074	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	325092	48511074	86495442	1194	29361											
OR4A15	81328	broad.mit.edu	37	chr11	55135624	55135624	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgggttcccccatgtacTtttttctggcttctttatca	6	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135624	A	A	55135624	3	1	11	1	0	0	0	0	1	0	0	0	11134	1609	56	5	267	5	OR4A15	11	55135624	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	6624550	55135624	79870892	1195	29362											
OR4C15	81309	broad.mit.edu	37	chr11	55322128	55322128	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcctatgtacttcttcTtgggcttcctgtccttcctg	7	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55322128	G	G	55322128	3	3	11	1	0	0	0	0	1	0	0	0	11142	1606	56	5	348	5	OR4C15	11	55322128	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	186504	55322128	79684388	1196	29363											
SPRYD5	84767	broad.mit.edu	37	chr11	55653101	55653101	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcagagaaacctcaacaCtgacatttgtttgaagaaca	9	9	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55653101	A	A	55653101	3	1	11	1	0	0	0	0	1	0	0	0	15229	565	20	3	199	3	SPRYD5	11	55653101	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	330973	55653101	79353415	1197	29364											
OR8H3	390152	broad.mit.edu	37	chr11	55889871	55889871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggtagaaggaatgacaCaaatgtggctgacttcatcc	12	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55889871	A	A	55889871	3	1	11	1	0	0	0	0	1	0	0	0	11333	478	17	3	25	3	OR8H3	11	55889871	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	236770	55889871	79116645	1198	29365											
OR8H1	219469	broad.mit.edu	37	chr11	56058272	56058272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccatgaaggaaatataGttggaagtcagtaagttcgc	11	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56058272	T	T	56058272	3	4	11	1	0	0	0	0	1	0	0	0	11331	1020	36	3	670	3	OR8H1	11	56058272	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	168401	56058272	78948244	1199	29366											
OR5M9	390162	broad.mit.edu	37	chr11	56230358	56230358	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggatctgcacaatagaagtGattgatttcaaagtttccac	9	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56230358	T	T	56230358	3	4	11	1	0	0	0	0	1	0	0	0	11271	1290	45	3	414	3	OR5M9	11	56230358	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	172086	56230358	78776158	1200	29367											
OR5M8	219484	broad.mit.edu	37	chr11	56257998	56257998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctataaattataaggttcagCatagggattactgtggtata	9	4	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56257998	T	T	56257998	3	4	11	1	0	0	0	0	1	0	0	0	11270	710	25	4	90	4	OR5M8	11	56257998	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	27640	56257998	78748518	1201	29368											
OR5M11	219487	broad.mit.edu	37	chr11	56310500	56310500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattagtcgacatctgcggGgttgcatttgatgtatagca	11	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56310500	T	T	56310500	2	4	11	1	0	0	0	0	0	0	0	1	11268	1219	43	2		2	OR5M11	11	56310500	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	52502	56310500	78696016	1202	29369											
SLC43A3	29015	broad.mit.edu	37	chr11	57185132	57185132	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcactgctccagtcctcctCctctcctgtgataggtttgc	8	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57185132	A	A	57185132	1	1	11	0	1	0	0	0	0	0	0	0	14748	870	30	3		3	SLC43A3	11	57185132	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	874632	57185132	77821384	1203	29370											
SLC43A3	29015	broad.mit.edu	37	chr11	57193057	57193057	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttgaaccggtcaaagaTgtagccagtggggaatgtca	14	7	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57193057	C	C	57193057	3	2	11	1	0	0	0	0	1	0	0	0	14748	1464	51	5	1248	5	SLC43A3	11	57193057	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	7925	57193057	77813459	1204	29371											
OR9Q2	219957	broad.mit.edu	37	chr11	57958655	57958655	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctgcagatccactctgcTggaggccgggccaagacctt	11	14	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57958655	C	C	57958655	2	2	11	1	0	0	0	0	0	0	0	1	11350	1567	55	5		5	OR9Q2	11	57958655	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	765598	57958655	77047861	1205	29372											
GLYATL2	219970	broad.mit.edu	37	chr11	58606978	58606978	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctctcaactcaaccctctCtctcctttgatctcctccta	1	19	5	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58606978	A	A	58606978	1	1	11	0	1	0	0	0	0	0	0	0	6545	928	32	3		3	GLYATL2	11	58606978	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	648323	58606978	76399538	1206	29373											
GLYATL1	92292	broad.mit.edu	37	chr11	58715346	58715346	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggtgtatggctctgtgTatcacatcaatcacgggaac	10	9	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58715346	C	C	58715346	3	2	11	1	0	0	0	0	1	0	0	0	6544	1638	57	5	201	5	GLYATL1	11	58715346	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	108368	58715346	76291170	1207	29374											
OR4D11	219986	broad.mit.edu	37	chr11	59271426	59271426	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgactgctacatggccatCtccaagcccctgcactatgt	7	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59271426	T	T	59271426	2	4	11	1	0	0	0	0	0	0	0	1	11149	903	32	4		4	OR4D11	11	59271426	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	556080	59271426	75735090	1208	29375											
PLAC1L	219990	broad.mit.edu	37	chr11	59807827	59807827	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccaaataaggaggaaaacGaacgcagctgagcatgggat	12	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59807827	T	T	59807827	1	4	11	0	1	0	0	0	0	0	0	0	12108	1073	37	3		3	PLAC1L	11	59807827	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	536401	59807827	75198689	1209	29376											
MS4A7	58475	broad.mit.edu	37	chr11	60152572	60152572	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttgtagactgtccagatCctgtgttgcctgttgatttc	9	10	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60152572	A	A	60152572	2	1	11	1	0	0	0	0	0	0	0	1	9960	845	30	3		3	MS4A7	11	60152572	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	344745	60152572	74853944	1210	29377											
MS4A15	219995	broad.mit.edu	37	chr11	60543016	60543016	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacccacaagggggcactAttgaaccactaccctgaagc	8	13	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60543016	G	G	60543016	1	3	11	0	1	0	0	0	0	0	0	0	9953	464	16	5		5	MS4A15	11	60543016	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	390444	60543016	74463500	1211	29378											
TMEM132A	54972	broad.mit.edu	37	chr11	60695109	60695109	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagccctctcattctccctCcaggtggtcccccctcgagt	7	18	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60695109	T	T	60695109	1	4	11	0	1	0	0	0	0	0	0	0	16168	870	30	4		4	TMEM132A	11	60695109	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	152093	60695109	74311407	1212	29379											
DAK	26007	broad.mit.edu	37	chr11	61110055	61110055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgacagatggcaaccGccgatgagattgtgaaactc	10	12	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61110055	T	T	61110055	3	4	11	1	0	0	0	0	1	0	0	0	4261	1087	38	3	730	3	DAK	11	61110055	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	414946	61110055	73896461	1213	29380											
PLA2G16	11145	broad.mit.edu	37	chr11	63357420	63357420	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcctctctccccacccttgTccccacccttgtcccaactg	4	22	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63357420	A	A	63357420	1	1	11	0	1	0	0	0	0	0	0	0	12088	1682	58	5		5	PLA2G16	11	63357420	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2247365	63357420	71649096	1214	29381											
MAP4K2	5871	broad.mit.edu	37	chr11	64566364	64566364	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagacagatgcaacgtgaGagggcgctcaagagattcag	14	8	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64566364	C	C	64566364	1	2	11	0	1	0	0	0	0	0	0	0	9352	957	33	4		4	MAP4K2	11	64566364	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1208944	64566364	70440152	1215	29382											
ATG2A	23130	broad.mit.edu	37	chr11	64665575	64665575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctcagcggaggtctccCctgggaccacggggttgatg	14	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64665575	A	A	64665575	3	1	11	1	0	0	0	0	1	0	0	0	1097	623	22	2	1007	2	ATG2A	11	64665575	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	99211	64665575	70340941	1216	29383											
SPDYC	387778	broad.mit.edu	37	chr11	64940262	64940262	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgttcgccttccccggggCcctggcctctcgccgcccca	10	22	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64940262	A	A	64940262	2	1	11	1	0	0	0	0	0	0	0	1	15144	726	26	3		3	SPDYC	11	64940262	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	274687	64940262	70066254	1217	29384											
SCYL1	57410	broad.mit.edu	37	chr11	65303778	65303778	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaaattggagtctgtgtcgGaggacccgacccagctggag	14	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65303778	C	C	65303778	3	2	11	1	0	0	0	0	1	0	0	0	14060	1175	41	4	1670	4	SCYL1	11	65303778	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	363516	65303778	69702738	1218	29385											
SCYL1	57410	broad.mit.edu	37	chr11	65304157	65304157	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctcactcacctccaagctGatccgttcgcacccaaccac	4	20	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65304157	C	C	65304157	2	2	11	1	0	0	0	0	0	0	0	1	14060	1277	45	4		4	SCYL1	11	65304157	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	379	65304157	69702359	1219	29386											
SNX32	254122	broad.mit.edu	37	chr11	65620493	65620493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacctccctccctccccCaggcaccagggtgtgcgtgc	9	21	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65620493	A	A	65620493	1	1	11	0	1	0	0	0	0	0	0	0	15016	609	21	2		2	SNX32	11	65620493	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	316336	65620493	69386023	1220	29387											
NPAS4	266743	broad.mit.edu	37	chr11	66191476	66191476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactgggggctcccagaaGcaccagcttccccagtgctc	11	16	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66191476	T	T	66191476	3	4	11	1	0	0	0	0	1	0	0	0	10660	971	34	3	1141	3	NPAS4	11	66191476	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	570983	66191476	68815040	1221	29388											
DPP3	10072	broad.mit.edu	37	chr11	66276615	66276615	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatccgatccttctctgagCgtttcccagaggatggaccc	9	14	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66276615	T	T	66276615	3	4	11	1	0	0	0	0	1	0	0	0	4768	768	27	4	2173	4	DPP3	11	66276615	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	85139	66276615	68729901	1222	29389											
CCS	9973	broad.mit.edu	37	chr11	66367901	66367901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaatataaatagatgagaGggtagagcacctggcctgtg	13	6	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66367901	T	T	66367901	1	4	11	0	1	0	0	0	0	0	0	0	2982	1015	35	2		2	CCS	11	66367901	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	91286	66367901	68638615	1223	29390											
RAD9A	5883	broad.mit.edu	37	chr11	67161065	67161065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagccgcctggtggtccaGctgcattgcaagttcggtga	14	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67161065	T	T	67161065	3	4	11	1	0	0	0	0	1	0	0	0	13103	962	34	3	347	3	RAD9A	11	67161065	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	793164	67161065	67845451	1224	29391											
CARNS1	57571	broad.mit.edu	37	chr11	67191766	67191766	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcttgcgtcctgccctGcccacccgcccacgtgctcg	11	19	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67191766	T	T	67191766	2	4	11	1	0	0	0	0	0	0	0	1	2682	1306	46	3		3	CARNS1	11	67191766	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	30701	67191766	67814750	1225	29392											
LRP5	4041	broad.mit.edu	37	chr11	68193386	68193386	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacctctgtcctcccaagctGagtgtggggcaagttctgga	12	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68193386	T	T	68193386	1	4	11	0	1	0	0	0	0	0	0	0	9047	1305	45	3		3	LRP5	11	68193386	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1001620	68193386	66813130	1226	29393											
GAL	51083	broad.mit.edu	37	chr11	68455648	68455648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggggacagctgtgggtGtcggggctgtccacagctgc	18	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68455648	T	T	68455648	1	4	11	0	1	0	0	0	0	0	0	0	6258	1392	48	3		3	GAL	11	68455648	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	262262	68455648	66550868	1227	29394											
CCND1	595	broad.mit.edu	37	chr11	69458580	69458580	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcacctcccctgatggcCgctcaccctgtgttcgcagc	9	20	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69458580	T	T	69458580	1	4	11	0	1	0	0	0	0	0	0	0	2946	667	23	4		4	CCND1	11	69458580	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1002932	69458580	65547936	1228	29395											
FAM86C	55199	broad.mit.edu	37	chr11	71507233	71507233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcccccacgcccacccGggcctgcatggtccccaagc	11	20	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71507233	T	T	71507233	1	4	11	0	1	0	0	0	0	0	0	0	5699	1131	39	1		1	FAM86C	11	71507233	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2048653	71507233	63499283	1229	29396											
PDE2A	5138	broad.mit.edu	37	chr11	72291955	72291955	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacctggaaagagttgtttGtgcctctgtggtccaggtca	12	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72291955	C	C	72291955	3	2	11	1	0	0	0	0	1	0	0	0	11730	1377	48	4	749	4	PDE2A	11	72291955	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	784722	72291955	62714561	1230	29397											
PDE2A	5138	broad.mit.edu	37	chr11	72295737	72295737	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggtcgccacgtgtcccgcGatgccctgatcggccgggat	15	14	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72295737	A	A	72295737	2	1	11	1	0	0	0	0	0	0	0	1	11730	1048	37	4		4	PDE2A	11	72295737	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3782	72295737	62710779	1231	29398											
SLCO2B1	11309	broad.mit.edu	37	chr11	74913994	74913994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgggcatccagttcatGttcctgaggattttgggtaa	13	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74913994	T	T	74913994	3	4	11	1	0	0	0	0	1	0	0	0	14841	1377	48	3	1858	3	SLCO2B1	11	74913994	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2618257	74913994	60092522	1232	29399											
ANKRD42	338699	broad.mit.edu	37	chr11	82905784	82905784	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccctgtgagtcagactgTcattggccttcatctctgtc	8	13	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82905784	C	C	82905784	1	2	11	0	1	0	0	0	0	0	0	0	670	1682	58	5		5	ANKRD42	11	82905784	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	7991790	82905784	52100732	1233	29400											
DLG2	1740	broad.mit.edu	37	chr11	83344203	83344203	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggtgttgcctttgttttcTcaagttgaattgctcacaaa	8	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83344203	C	C	83344203	1	2	11	0	1	0	0	0	0	0	0	0	4595	1566	54	5		5	DLG2	11	83344203	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	438419	83344203	51662313	1234	29401											
DLG2	1740	broad.mit.edu	37	chr11	83525540	83525540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcccaaagtgtttctgtGctcctttacaaatgggccac	7	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83525540	T	T	83525540	1	4	11	0	1	0	0	0	0	0	0	0	4595	1334	46	3		3	DLG2	11	83525540	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	181337	83525540	51480976	1235	29402											
FZD4	8322	broad.mit.edu	37	chr11	86663276	86663276	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcttccccaggctggatGggggttttgtgaggtaaggg	16	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86663276	T	T	86663276	2	4	11	1	0	0	0	0	0	0	0	1	6192	1335	47	2		2	FZD4	11	86663276	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3137736	86663276	48343240	1236	29403											
FOLH1B	219595	broad.mit.edu	37	chr11	89424270	89424270	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacaaaatctacaatatttCtatgaaacatccacaggaaa	4	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89424270	T	T	89424270	3	4	11	1	0	0	0	0	1	0	0	0	6038	913	32	4	954	4	FOLH1B	11	89424270	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2760994	89424270	45582246	1237	29404											
NAALAD2	10003	broad.mit.edu	37	chr11	89868097	89868097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagctggaagggattgGgctgtgcgctagccctggcc	17	11	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89868097	T	T	89868097	1	4	11	0	1	0	0	0	0	0	0	0	10222	1247	43	2		2	NAALAD2	11	89868097	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	443827	89868097	45138419	1238	29405											
NAALAD2	10003	broad.mit.edu	37	chr11	89885701	89885701	+	Intron	DEL	C	-	-													ttttgcaaaaatactccttgCccttttagaaggaatacaag							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89885701	-	-	89885701	6	5	11	0	1	1	0	1	0	0	0	0	10222	754	26	0		0	NAALAD2	11	89885701	Intron	DEL	C	TCGA-05-4398-01A-01D-1265-08	17604	89885701	45120815	1239	29406											
NAALAD2	10003	broad.mit.edu	37	chr11	89896172	89896172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaaggatttacaatgtaGttggaactatcagaggatct	9	5	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89896172	T	T	89896172	3	4	11	1	0	0	0	0	1	0	0	0	10222	1029	36	3	1079	3	NAALAD2	11	89896172	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	10471	89896172	45110344	1240	29407											
FAT3	120114	broad.mit.edu	37	chr11	92616178	92616178	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccgcaagaactactccCgcaacaacatcacgctagtg	6	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92616178	T	T	92616178	3	4	11	1	0	0	0	0	1	0	0	0	5748	652	23	4	12646	4	FAT3	11	92616178	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2720006	92616178	42390338	1241	29408											
MTNR1B	4544	broad.mit.edu	37	chr11	92714849	92714849	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaccaccgaatctaccggCgctggcacacccctctgcac	7	20	2	0	rs148152472		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92714849	T	T	92714849	3	4	11	1	0	0	0	0	1	0	0	0	10046	768	27	4	466	4	MTNR1B	11	92714849	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	98671	92714849	42291667	1242	29409											
CNTN5	53942	broad.mit.edu	37	chr11	99715985	99715985	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagtagagaagctacactgCagtttgcctgtgagtaaaat	10	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99715985	T	T	99715985	4	4	11	1	0	0	0	0	0	1	0	0	3676	711	25	4	582	4	CNTN5	11	99715985	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	7001136	99715985	35290531	1243	29410											
CNTN5	53942	broad.mit.edu	37	chr11	100141943	100141943	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacaggagatccaagcaccCcatctcgaatgatccgcaca	9	14	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100141943	G	G	100141943	3	3	11	1	0	0	0	0	1	0	0	0	3676	623	22	4	2346	4	CNTN5	11	100141943	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	425958	100141943	34864573	1244	29411											
C11orf87	399947	broad.mit.edu	37	chr11	109294562	109294562	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggtgctgattgtcctggTtaccctcatcttctgcctca	9	13	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109294562	C	C	109294562	3	2	11	1	0	0	0	0	1	0	0	0	1681	1725	60	5	205	5	C11orf87	11	109294562	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	9152619	109294562	25711954	1245	29412											
LAYN	143903	broad.mit.edu	37	chr11	111420459	111420460	+	Missense_Mutation	DNP	GG	AT	AT													gttccagtggaatgatgaccGgtgcaacatgaagaacaatt					rs143228822		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	111420460	AT	AT	111420459	3	1	11	1	0	0	0	0	1	0	0	0	8721	1116	39	4	510	4	LAYN	11	111420459	Missense_Mutation	DNP	GG	TCGA-05-4398-01A-01D-1265-08	2125897	111420459	23586057	1246	29413											
PPP2R1B	5519	broad.mit.edu	37	chr11	111614263	111614263	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatggcgtatactgcagaaGaggtcaaaaacatgttctca	11	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111614263	A	A	111614263	1	1	11	0	1	0	0	0	0	0	0	0	12484	957	33	4		4	PPP2R1B	11	111614263	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	193804	111614263	23392253	1247	29414											
ALG9	79796	broad.mit.edu	37	chr11	111680426	111680426	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattcttctttattggatgaAtattttggctcccggggtgt	10	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111680426	G	G	111680426	2	3	11	1	0	0	0	0	0	0	0	1	524	108	4	5		5	ALG9	11	111680426	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	66163	111680426	23326090	1248	29415											
DRD2	1813	broad.mit.edu	37	chr11	113295192	113295192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtctgcagcgccttctcgCgggacacagccatgcacacc	11	16	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113295192	T	T	113295192	3	4	11	1	0	0	0	0	1	0	0	0	4797	768	27	4	1177	4	DRD2	11	113295192	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1614766	113295192	21711324	1249	29416											
DSCAML1	57453	broad.mit.edu	37	chr11	117299216	117299216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggcagcgctgggggcgGtgggtggctcagcaggggtg	25	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117299216	T	T	117299216	3	4	11	1	0	0	0	0	1	0	0	0	4809	1261	44	3	175	3	DSCAML1	11	117299216	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4004024	117299216	17707300	1250	29417											
AMICA1	120425	broad.mit.edu	37	chr11	118071460	118071460	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagactccaccccatatctgGacactagggacactgtctcc	7	16	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118071460	T	T	118071460	1	4	11	0	1	0	0	0	0	0	0	0	574	1189	41	3		3	AMICA1	11	118071460	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	772244	118071460	16935056	1251	29418											
MLL	4297	broad.mit.edu	37	chr11	118363985	118363985	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcagaatttctagtgccaAtaaagcttctttggaccttt	6	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118363985	G	G	118363985	1	3	11	0	1	0	0	0	0	0	0	0	9713	116	4	5		5	MLL	11	118363985	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	292525	118363985	16642531	1252	29419											
C2CD2L	9854	broad.mit.edu	37	chr11	118983090	118983090	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagtgctgaggagcagcAgctgtggagacagtaagtga	15	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118983090	T	T	118983090	3	4	11	1	0	0	0	0	1	0	0	0	2175	188	7	5	1102	5	C2CD2L	11	118983090	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	619105	118983090	16023426	1253	29420											
ABCG4	64137	broad.mit.edu	37	chr11	119024942	119024942	+	Intron	DEL	C	-	-													gtattctgaaagggcattgaCccccatcctcaacccacatc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119024942	-	-	119024942	6	5	11	0	1	1	0	1	0	0	0	0	70	522	18	0		0	ABCG4	11	119024942	Intron	DEL	C	TCGA-05-4398-01A-01D-1265-08	41852	119024942	15981574	1254	29421											
CBL	867	broad.mit.edu	37	chr11	119146999	119146999	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaccttcaggtcctggaaGacttttgtttttctttttta	7	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119146999	T	T	119146999	1	4	11	0	1	0	0	0	0	0	0	0	2726	957	33	3		3	CBL	11	119146999	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	122057	119146999	15859517	1255	29422											
TRIM29	23650	broad.mit.edu	37	chr11	119998088	119998088	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctatgcagctgctcccGggtctgcttgtcctcatgca	11	13	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119998088	T	T	119998088	2	4	11	1	0	0	0	0	0	0	0	1	16627	1115	39	1		1	TRIM29	11	119998088	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	851089	119998088	15008428	1256	29423											
TMEM136	219902	broad.mit.edu	37	chr11	120201131	120201131	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagcatctggcgctttgcAtggaggaagagcatcaagaa	12	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120201131	C	C	120201131	2	2	11	1	0	0	0	0	0	0	0	1	16175	204	8	5		5	TMEM136	11	120201131	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	203043	120201131	14805385	1257	29424											
SORL1	6653	broad.mit.edu	37	chr11	121477578	121477578	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgcccctcgaaatctccAgctgtcactccccagggaag	9	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121477578	T	T	121477578	3	4	11	1	0	0	0	0	1	0	0	0	15048	188	7	5	5115	5	SORL1	11	121477578	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1276447	121477578	13528938	1258	29425											
SORL1	6653	broad.mit.edu	37	chr11	121483623	121483623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgtagagcttgactggGggtgccagggaaggggaggt	20	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121483623	T	T	121483623	1	4	11	0	1	0	0	0	0	0	0	0	15048	1247	43	2		2	SORL1	11	121483623	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	6045	121483623	13522893	1259	29426											
OR6T1	219874	broad.mit.edu	37	chr11	123813850	123813850	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacgctttccttcgctcAgcagctgtaggggccctgag	12	12	1	1	rs76651236	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123813850	T	T	123813850	2	4	11	1	0	0	0	0	0	0	0	1	11304	175	7	5		5	OR6T1	11	123813850	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	2330227	123813850	11192666	1260	29427											
OR10G9	219870	broad.mit.edu	37	chr11	123894150	123894150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagatgtgccctcctggCcaccagcacttggctcagtg	12	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123894150	A	A	123894150	3	1	11	1	0	0	0	0	1	0	0	0	10998	739	26	3	433	3	OR10G9	11	123894150	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	80300	123894150	11112366	1261	29428											
SPA17	53340	broad.mit.edu	37	chr11	124561532	124561532	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattacttctaagcagtttGatacaagactttgccatttt	5	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124561532	C	C	124561532	1	2	11	0	1	0	0	0	0	0	0	0	15085	1305	45	4		4	SPA17	11	124561532	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	667382	124561532	10444984	1262	29429											
C11orf61	79684	broad.mit.edu	37	chr11	124661392	124661392	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcactctcctaaatggctGagggcaagagttggagaagg	14	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124661392	C	C	124661392	1	2	11	0	1	0	0	0	0	0	0	0	1665	1305	45	4		4	C11orf61	11	124661392	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	99860	124661392	10345124	1263	29430											
ROBO4	54538	broad.mit.edu	37	chr11	124764058	124764058	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaggaaggcgggatgcaGgctgaagggtagggtgggtc	22	4	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124764058	A	A	124764058	1	1	11	0	1	0	0	0	0	0	0	0	13627	1015	35	4		4	ROBO4	11	124764058	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	102666	124764058	10242458	1264	29431											
ROBO4	54538	broad.mit.edu	37	chr11	124764957	124764957	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcagtaggaagggctAtgacagctagtgggggtacc	17	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124764957	G	G	124764957	1	3	11	0	1	0	0	0	0	0	0	0	13627	464	16	5		5	ROBO4	11	124764957	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	899	124764957	10241559	1265	29432											
ROBO4	54538	broad.mit.edu	37	chr11	124765005	124765005	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacggatgatgccattgtggTtttcagcaggtggtgggacc	15	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124765005	C	C	124765005	3	2	11	1	0	0	0	0	1	0	0	0	13627	1725	60	5	1950	5	ROBO4	11	124765005	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	48	124765005	10241511	1266	29433											
SLC37A2	219855	broad.mit.edu	37	chr11	124950697	124950697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgggcccctcactccCcacaagtgagcctagaagtt	11	13	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124950697	A	A	124950697	1	1	11	0	1	0	0	0	0	0	0	0	14712	638	22	2		2	SLC37A2	11	124950697	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	185692	124950697	10055819	1267	29434											
FEZ1	9638	broad.mit.edu	37	chr11	125325977	125325977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtccagcagctcggtcagCtcagacccagacatgtgcct	11	14	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125325977	A	A	125325977	3	1	11	1	0	0	0	0	1	0	0	0	5880	796	28	3	505	3	FEZ1	11	125325977	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	375280	125325977	9680539	1268	29435											
ADAMTS8	11095	broad.mit.edu	37	chr11	130275413	130275413	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtctgcacctcagtaccGcatgtccaggagcacaagac	9	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130275413	A	A	130275413	1	1	11	0	1	0	0	0	0	0	0	0	272	1102	38	4		4	ADAMTS8	11	130275413	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	4949436	130275413	4731103	1269	29436											
SNX19	399979	broad.mit.edu	37	chr11	130776630	130776630	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctagacctggtacagaaacAaagagcagaaacaggttgta	10	8	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130776630	G	G	130776630	1	3	11	0	1	0	0	0	0	0	0	0	15004	145	5	5		5	SNX19	11	130776630	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	501217	130776630	4229886	1270	29437											
NTM	50863	broad.mit.edu	37	chr11	131240574	131240574	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctcggctttcttgttgtGtccttcagcaaaacagtgga	9	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131240574	T	T	131240574	1	4	11	0	1	0	0	0	0	0	0	0	10794	1392	48	3		3	NTM	11	131240574	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	463944	131240574	3765942	1271	29438											
NTM	50863	broad.mit.edu	37	chr11	132180009	132180009	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcttctttttgcagatcCaccatacatttcagaagcca	4	12	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132180009	T	T	132180009	3	4	11	1	0	0	0	0	1	0	0	0	10794	594	21	4	769	4	NTM	11	132180009	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	939435	132180009	2826507	1272	29439											
WNT5B	81029	broad.mit.edu	37	chr12	1741803	1741803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgggcctttttttcccCtttctggattgctgtcctag	8	13	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1741803	A	A	1741803	1	1	11	0	1	0	0	0	0	0	0	0	17519	696	24	2		2	WNT5B	12	1741803	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08		1741803	132110092	1273	29440											
CACNA1C	775	broad.mit.edu	37	chr12	2566788	2566788	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatggggcaaacgctctcGgagggaaaggggccggattt	17	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2566788	A	A	2566788	3	1	11	1	0	0	0	0	1	0	0	0	2566	1117	39	4	691	4	CACNA1C	12	2566788	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	824985	2566788	131285107	1274	29441											
CACNA1C	775	broad.mit.edu	37	chr12	2711159	2711159	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagcccacgatgggccAtgcagctagcaaggggtgcc	13	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2711159	T	T	2711159	1	4	11	0	1	0	0	0	0	0	0	0	2566	232	8	5		5	CACNA1C	12	2711159	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	144371	2711159	131140736	1275	29442											
CACNA1C	775	broad.mit.edu	37	chr12	2711212	2711212	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaccctggagggcctgccTgcagggccaccgcagtgtga	15	14	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2711212	C	C	2711212	1	2	11	0	1	0	0	0	0	0	0	0	2566	1595	55	5		5	CACNA1C	12	2711212	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	53	2711212	131140683	1276	29443											
FOXM1	2305	broad.mit.edu	37	chr12	2977717	2977717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttgattttggttgctgtGggacacattaccttccagcc	9	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2977717	A	A	2977717	1	1	11	0	1	0	0	0	0	0	0	0	6078	1363	47	4		4	FOXM1	12	2977717	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	266505	2977717	130874178	1277	29444											
PRMT8	56341	broad.mit.edu	37	chr12	3701127	3701127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttgctatgaacttgtaGtatcgggttgtttgtcttct	9	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3701127	T	T	3701127	1	4	11	0	1	0	0	0	0	0	0	0	12648	1044	36	3		3	PRMT8	12	3701127	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	723410	3701127	130150768	1278	29445											
C12orf4	57102	broad.mit.edu	37	chr12	4639286	4639286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacacactactagaaaagTatgtatgattccatttttgc	5	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4639286	C	C	4639286	1	2	11	0	1	0	0	0	0	0	0	0	1698	1653	57	5		5	C12orf4	12	4639286	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	938159	4639286	129212609	1279	29446											
C12orf4	57102	broad.mit.edu	37	chr12	4645226	4645226	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcagcagcatcagacgTccatgcaaatgactggcatt	10	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4645226	C	C	4645226	2	2	11	1	0	0	0	0	0	0	0	1	1698	1654	58	5		5	C12orf4	12	4645226	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	5940	4645226	129206669	1280	29447											
NTF3	4908	broad.mit.edu	37	chr12	5603588	5603588	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccaaagctgaggctcccCgagagccggagcggggaggg	18	12	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603588	A	A	5603588	2	1	11	1	0	0	0	0	0	0	0	1	10791	644	23	1		1	NTF3	12	5603588	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	958362	5603588	128248307	1281	29448											
ANO2	57101	broad.mit.edu	37	chr12	5687254	5687254	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagctccaggtgatgttTtgcaggtgaactacggagca	13	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5687254	C	C	5687254	1	2	11	0	1	0	0	0	0	0	0	0	697	1856	64	5		5	ANO2	12	5687254	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	83666	5687254	128164641	1282	29449											
VWF	7450	broad.mit.edu	37	chr12	6167018	6167018	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccgggttcacatactcaTgcgcgggttgagggcgcagg	15	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6167018	G	G	6167018	3	3	11	1	0	0	0	0	1	0	0	0	17373	1464	51	5	6871	5	VWF	12	6167018	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	479764	6167018	127684877	1283	29450											
MLF2	8079	broad.mit.edu	37	chr12	6861144	6861144	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcatgttgccatctgtgaTgctgaggaaggggctatatc	14	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6861144	A	A	6861144	3	1	11	1	0	0	0	0	1	0	0	0	9709	1464	51	5	643	5	MLF2	12	6861144	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	694126	6861144	126990751	1284	29451											
LEPREL2	10536	broad.mit.edu	37	chr12	6939836	6939836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgcagtgccggcaacGctgtgtgggggaaacagcca	16	11	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6939836	T	T	6939836	3	4	11	1	0	0	0	0	1	0	0	0	8803	1087	38	3	900	3	LEPREL2	12	6939836	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	78692	6939836	126912059	1285	29452											
PTPN6	5777	broad.mit.edu	37	chr12	7064446	7064446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtcaggggtgggcccAgctgcctccccacttcccct	13	17	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7064446	G	G	7064446	1	3	11	0	1	0	0	0	0	0	0	0	12900	203	7	5		5	PTPN6	12	7064446	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	124610	7064446	126787449	1286	29453											
CLSTN3	9746	broad.mit.edu	37	chr12	7303702	7303702	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagggaggggcaggtggcAggtgagtgtgttgggacagg	24	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7303702	G	G	7303702	1	3	11	0	1	0	0	0	0	0	0	0	3595	203	7	5		5	CLSTN3	12	7303702	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	239256	7303702	126548193	1287	29454											
CD163L1	283316	broad.mit.edu	37	chr12	7586276	7586276	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccattgaccagcctcaactCcaaatctgttccatctgcaa	4	15	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7586276	G	G	7586276	3	3	11	1	0	0	0	0	1	0	0	0	2998	864	30	4	4290	4	CD163L1	12	7586276	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	282574	7586276	126265619	1288	29455											
CD163	9332	broad.mit.edu	37	chr12	7654058	7654059	+	Splice_Site	DNP	CC	AA	AA													tcagctccttgtctgttcctCctgcaacaatggattaagac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7654059	AA	AA	7654058	5	1	11	1	0	0	0	0	0	0	1	0	2997	869	30	3	3392	3	CD163	12	7654058	Splice_Site	DNP	CC	TCGA-05-4398-01A-01D-1265-08	67782	7654058	126197837	1289	29456											
CLEC4A	50856	broad.mit.edu	37	chr12	8289466	8289466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagcgacattggcaatGggttgatcagacaccataca	11	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8289466	T	T	8289466	3	4	11	1	0	0	0	0	1	0	0	0	3544	1357	47	2	551	2	CLEC4A	12	8289466	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	635408	8289466	125562429	1290	29457											
MFAP5	8076	broad.mit.edu	37	chr12	8813495	8813495	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacccccaggggtatccagtCtatagcaaaggaagagaaaa	11	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8813495	A	A	8813495	5	1	11	1	0	0	0	0	0	0	1	0	9611	927	32	3	495	3	MFAP5	12	8813495	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	524029	8813495	125038400	1291	29458											
A2ML1	144568	broad.mit.edu	37	chr12	8991675	8991675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatgagaatatcaggtgCctagatctttatacatctgg	10	6	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8991675	A	A	8991675	1	1	11	0	1	0	0	0	0	0	0	0	5	754	26	3		3	A2ML1	12	8991675	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	178180	8991675	124860220	1292	29459											
TAS2R14	50840	broad.mit.edu	37	chr12	11091741	11091741	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgctatgaaactatttccTaaatttccaattataaattc	3	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11091741	A	A	11091741	3	1	11	1	0	0	0	0	1	0	0	0	15687	1519	53	5	890	5	TAS2R14	12	11091741	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	2100066	11091741	122760154	1293	29460											
LRP6	4040	broad.mit.edu	37	chr12	12336871	12336871	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaacaaatcatgaagaattCcaatagttataaaatttttc	3	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12336871	G	G	12336871	1	3	11	0	1	0	0	0	0	0	0	0	9049	870	30	4		4	LRP6	12	12336871	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1245130	12336871	121515024	1294	29461											
SLCO1C1	53919	broad.mit.edu	37	chr12	20858877	20858877	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatgttttattcttttccTcaaagggaatctcttagtta	6	6	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20858877	G	G	20858877	1	3	11	0	1	0	0	0	0	0	0	0	14839	1566	54	5		5	SLCO1C1	12	20858877	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	8522006	20858877	112993018	1295	29462											
SLCO1B1	10599	broad.mit.edu	37	chr12	21370275	21370275	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacattttcatatgcatgaGactataaacacacctaatga	4	8	1	2	rs77112190		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21370275	T	T	21370275	1	4	11	0	1	0	0	0	0	0	0	0	14837	957	33	3		3	SLCO1B1	12	21370275	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	511398	21370275	112481620	1296	29463											
OVCH1	341350	broad.mit.edu	37	chr12	29648297	29648297	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgtattcaggatgggtAataatttttgagacaggaat	11	3	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29648297	T	T	29648297	2	4	11	1	0	0	0	0	0	0	0	1	11417	358	13	5		5	OVCH1	12	29648297	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	8278022	29648297	104203598	1297	29464											
TMTC1	83857	broad.mit.edu	37	chr12	29709830	29709830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagagcccggttatgctGtggatggagctggagagccc	16	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29709830	T	T	29709830	3	4	11	1	0	0	0	0	1	0	0	0	16383	1386	48	3	1048	3	TMTC1	12	29709830	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	61533	29709830	104142065	1298	29465											
TMTC1	83857	broad.mit.edu	37	chr12	29786291	29786291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaagagaagaagaatcaCtgaaacactgctcaagaacc	7	8	2	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29786291	A	A	29786291	1	1	11	0	1	0	0	0	0	0	0	0	16383	580	20	3		3	TMTC1	12	29786291	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	76461	29786291	104065604	1299	29466											
TMTC1	83857	broad.mit.edu	37	chr12	29904592	29904592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggaccaagaaacccagcCcagtacctcatcatggacca	8	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29904592	A	A	29904592	1	1	11	0	1	0	0	0	0	0	0	0	16383	638	22	2		2	TMTC1	12	29904592	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	118301	29904592	103947303	1300	29467											
ALG10	84920	broad.mit.edu	37	chr12	34175307	34175307	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgtgcgccccgggcaatgcGattgagagggtaatcatccg	14	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34175307	C	C	34175307	1	2	11	0	1	0	0	0	0	0	0	0	511	1073	37	4		4	ALG10	12	34175307	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	4270715	34175307	99676588	1301	29468											
SLC2A13	114134	broad.mit.edu	37	chr12	40158324	40158324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccaggacattgaaaatcCagtttattccagatgaacat	6	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40158324	A	A	40158324	3	1	11	1	0	0	0	0	1	0	0	0	14656	595	21	2	296	2	SLC2A13	12	40158324	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5983017	40158324	93693571	1302	29469											
LRRK2	120892	broad.mit.edu	37	chr12	40651089	40651089	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttatcaaaaggaatacaccTgaatgttttggagttaatgc	9	5	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40651089	C	C	40651089	3	2	11	1	0	0	0	0	1	0	0	0	9120	1580	55	5	1374	5	LRRK2	12	40651089	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	492765	40651089	93200806	1303	29470											
LRRK2	120892	broad.mit.edu	37	chr12	40657724	40657724	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtatgttgaatataagttttCtgtatttatactattaacta	5	3	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40657724	T	T	40657724	1	4	11	0	1	0	0	0	0	0	0	0	9120	928	32	4		4	LRRK2	12	40657724	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6635	40657724	93194171	1304	29471											
LRRK2	120892	broad.mit.edu	37	chr12	40671873	40671873	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtatttatctgactctaattCtcatttccactctttttagt	3	9	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40671873	T	T	40671873	1	4	11	0	1	0	0	0	0	0	0	0	9120	928	32	4		4	LRRK2	12	40671873	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	14149	40671873	93180022	1305	29472											
PDZRN4	29951	broad.mit.edu	37	chr12	41967276	41967276	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattaggagcgacgggacaCggtacatcacaaagagaccc	11	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41967276	G	G	41967276	3	3	11	1	0	0	0	0	1	0	0	0	11804	527	19	4	2806	4	PDZRN4	12	41967276	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1295403	41967276	91884619	1306	29473											
TMEM117	84216	broad.mit.edu	37	chr12	44605102	44605102	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgcttcaggacaaaccCtatcctgactggggaaaatc	9	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44605102	A	A	44605102	2	1	11	1	0	0	0	0	0	0	0	1	16154	668	24	2		2	TMEM117	12	44605102	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2637826	44605102	89246793	1307	29474											
SLC38A2	54407	broad.mit.edu	37	chr12	46758407	46758407	+	Intron	DEL	A	-	-													gcttataaaaaattttttctAaaaaaaaaatcatacccacc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46758407	-	-	46758407	6	5	11	0	1	1	0	1	0	0	0	0	14718	377	13	0		0	SLC38A2	12	46758407	Intron	DEL	A	TCGA-05-4398-01A-01D-1265-08	2153305	46758407	87093488	1308	29475											
FAM113B	91523	broad.mit.edu	37	chr12	47629393	47629393	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccgcccaagctccggCggcagaaggccaccttcctg	10	17	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47629393	A	A	47629393	2	1	11	1	0	0	0	0	0	0	0	1	5448	759	27	3		3	FAM113B	12	47629393	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	870986	47629393	86222502	1309	29476											
RAPGEF3	10411	broad.mit.edu	37	chr12	48145152	48145152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcactgcccagcccagccCggggcaccccaccctgggct	10	22	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48145152	A	A	48145152	1	1	11	0	1	0	0	0	0	0	0	0	13153	667	23	1		1	RAPGEF3	12	48145152	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	515759	48145152	85706743	1310	29477											
TMBIM6	7009	broad.mit.edu	37	chr12	50152087	50152087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggtagtgtcttatgtgcTtttatctttatgaatatacc	7	5	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50152087	C	C	50152087	1	2	11	0	1	0	0	0	0	0	0	0	16106	1624	56	5		5	TMBIM6	12	50152087	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2006935	50152087	83699808	1311	29478											
FAIM2	23017	broad.mit.edu	37	chr12	50291695	50291695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggcttctgcaggcagaGggttgggccagggacctctc	17	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50291695	T	T	50291695	1	4	11	0	1	0	0	0	0	0	0	0	5422	1015	35	2		2	FAIM2	12	50291695	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	139608	50291695	83560200	1312	29479											
TFCP2	7024	broad.mit.edu	37	chr12	51500371	51500371	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgatggggagttattgacaTacgtgatctcgggccatgga	15	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51500371	A	A	51500371	3	1	11	1	0	0	0	0	1	0	0	0	15918	1406	49	5	686	5	TFCP2	12	51500371	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	1208676	51500371	82351524	1313	29480											
KRT5	3852	broad.mit.edu	37	chr12	52911613	52911613	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttccattcaaatctttcaCtcattgtgatatgacaactt	4	9	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52911613	T	T	52911613	1	4	11	0	1	0	0	0	0	0	0	0	8550	580	20	4		4	KRT5	12	52911613	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1411242	52911613	80940282	1314	29481											
KRT72	140807	broad.mit.edu	37	chr12	52985302	52985302	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctttagggcaatctcctcGtactgggcacggacctcggc	11	14	2	0	rs112771714	byFrequency;by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52985302	A	A	52985302	2	1	11	1	0	0	0	0	0	0	0	1	8556	1140	40	4		4	KRT72	12	52985302	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	73689	52985302	80866593	1315	29482											
ZNF740	283337	broad.mit.edu	37	chr12	53579879	53579879	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtaagtctcttgtttatAttcaaaagggggagaatagt	11	4	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53579879	G	G	53579879	1	3	11	0	1	0	0	0	0	0	0	0	18257	464	16	5		5	ZNF740	12	53579879	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	594577	53579879	80272016	1316	29483											
ZNF740	283337	broad.mit.edu	37	chr12	53581253	53581253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtagctgcgtttgtctGctcaggcacttaaccctccc	9	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53581253	T	T	53581253	1	4	11	0	1	0	0	0	0	0	0	0	18257	1334	46	3		3	ZNF740	12	53581253	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1374	53581253	80270642	1317	29484											
COPZ1	22818	broad.mit.edu	37	chr12	54744395	54744395	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttccccaatcgatgctctCagggtcatctcggggatcac	10	13	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54744395	G	G	54744395	1	3	11	0	1	0	0	0	0	0	0	0	3773	841	29	4		4	COPZ1	12	54744395	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	1163142	54744395	79107500	1318	29485											
SMARCC2	6601	broad.mit.edu	37	chr12	56583120	56583120	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggtccccgcgcggcccgGcccggcccgcgtaccttctt	12	22	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56583120	A	A	56583120	1	1	11	0	1	0	0	0	0	0	0	0	14890	1218	42	4		4	SMARCC2	12	56583120	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1838725	56583120	77268775	1319	29486											
LRP1	4035	broad.mit.edu	37	chr12	57572789	57572789	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgaagctccacaaggacAacaccacctgctatggtagg	9	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57572789	T	T	57572789	3	4	11	1	0	0	0	0	1	0	0	0	9038	130	5	5	4833	5	LRP1	12	57572789	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	989669	57572789	76279106	1320	29487											
SHMT2	6472	broad.mit.edu	37	chr12	57623458	57623458	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgttagctttggcgcctcAgcgagctcttctcgcgcatg	11	15	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57623458	T	T	57623458	1	4	11	0	1	0	0	0	0	0	0	0	14399	203	7	5		5	SHMT2	12	57623458	5'Flank	SNP	A	TCGA-05-4398-01A-01D-1265-08	50669	57623458	76228437	1321	29488											
GLI1	2735	broad.mit.edu	37	chr12	57859079	57859079	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgatttccctcagctcaGggtgggtgggtggtggattt	15	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57859079	A	A	57859079	1	1	11	0	1	0	0	0	0	0	0	0	6501	1015	35	4		4	GLI1	12	57859079	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	235621	57859079	75992816	1322	29489											
ARHGAP9	64333	broad.mit.edu	37	chr12	57869642	57869642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatgacagtccgcagcgCgcggtgccaggctcgcagct	14	15	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57869642	A	A	57869642	3	1	11	1	0	0	0	0	1	0	0	0	891	768	27	3	946	3	ARHGAP9	12	57869642	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	10563	57869642	75982253	1323	29490											
OS9	10956	broad.mit.edu	37	chr12	58089584	58089584	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaggactggtggacatatGaattctgttatggacgccac	11	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58089584	A	A	58089584	3	1	11	1	0	0	0	0	1	0	0	0	11366	1291	45	4	371	4	OS9	12	58089584	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	219942	58089584	75762311	1324	29491											
DPY19L2	283417	broad.mit.edu	37	chr12	64020321	64020321	+	Intron	DEL	C	-	-													gtcccactgtaaaaaaaaaaCaaaaaaaacagagaatacaa					rs7310030	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64020321	-	-	64020321	6	5	11	0	1	1	0	1	0	0	0	0	4781	493	17	0		0	DPY19L2	12	64020321	Intron	DEL	C	TCGA-05-4398-01A-01D-1265-08	5930737	64020321	69831574	1325	29492											
SRGAP1	57522	broad.mit.edu	37	chr12	64456851	64456851	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgataagcagagattcaTggagatgtaccctgctgcgt	13	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64456851	C	C	64456851	3	2	11	1	0	0	0	0	1	0	0	0	15263	1464	51	5	982	5	SRGAP1	12	64456851	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	436530	64456851	69395044	1326	29493											
RASSF3	283349	broad.mit.edu	37	chr12	65088402	65088402	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccttaggctggcaacacCccagctcttgcagaccacac	8	17	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65088402	T	T	65088402	1	4	11	0	1	0	0	0	0	0	0	0	13195	638	22	4		4	RASSF3	12	65088402	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	631551	65088402	68763493	1327	29494											
IRAK3	11213	broad.mit.edu	37	chr12	66638250	66638250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atattttgtcttgtttgtccCtgatcacaattttagtgcaa	6	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66638250	T	T	66638250	1	4	11	0	1	0	0	0	0	0	0	0	7894	696	24	4		4	IRAK3	12	66638250	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1549848	66638250	67213645	1328	29495											
NUP107	57122	broad.mit.edu	37	chr12	69124946	69124946	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatacctgtcatttgccTcaagacctagctgttgccca	6	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69124946	C	C	69124946	2	2	11	1	0	0	0	0	0	0	0	1	10848	1538	54	5		5	NUP107	12	69124946	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	2486696	69124946	64726949	1329	29496											
BEST3	144453	broad.mit.edu	37	chr12	70049505	70049505	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtgggcactcaggaaccGcttgactcttcttatcatgg	10	11	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70049505	A	A	70049505	3	1	11	1	0	0	0	0	1	0	0	0	1411	1086	38	4	821	4	BEST3	12	70049505	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	924559	70049505	63802390	1330	29497											
NAV3	89795	broad.mit.edu	37	chr12	78400636	78400636	+	Frame_Shift_Del	DEL	C	-	-													gtggctcaacaaatagcagtCccaaagtgtcacctaagttg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78400636	-	-	78400636	7	5	11	1	0	1	0	1	0	0	0	0	10279	855	30	0	1348	0	NAV3	12	78400636	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	8351131	78400636	55451259	1331	29498											
NAV3	89795	broad.mit.edu	37	chr12	78531021	78531021	+	Frame_Shift_Del	DEL	C	-	-													atgatgcgctcaaacagcatCccagcccaagactcttcctt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78531021	-	-	78531021	7	5	11	1	0	1	0	1	0	0	0	0	10279	845	30	0	4580	0	NAV3	12	78531021	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	130385	78531021	55320874	1332	29499											
NAV3	89795	broad.mit.edu	37	chr12	78552936	78552936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcttttcatccatccaCataagattctgacatttaaa	5	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78552936	A	A	78552936	1	1	11	0	1	0	0	0	0	0	0	0	10279	493	17	3		3	NAV3	12	78552936	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	21915	78552936	55298959	1333	29500											
C12orf74	338809	broad.mit.edu	37	chr12	93100961	93100961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagttgctgaaccacaaaGcaaaatagatctcagagttg	8	9	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93100961	T	T	93100961	1	4	11	0	1	0	0	0	0	0	0	0	1727	986	34	3		3	C12orf74	12	93100961	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	14548025	93100961	40750934	1334	29501											
C12orf63	374467	broad.mit.edu	37	chr12	97082874	97082874	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaaaataacatgaatcttGattaaatatgacaagcccgt	6	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97082874	C	C	97082874	1	2	11	0	1	0	0	0	0	0	0	0	1719	1305	45	4		4	C12orf63	12	97082874	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3981913	97082874	36769021	1335	29502											
ANKS1B	56899	broad.mit.edu	37	chr12	99478723	99478723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggaaggagctggattgCctgtagaattctttgtctgt	12	6	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99478723	A	A	99478723	3	1	11	1	0	0	0	0	1	0	0	0	689	739	26	3	1376	3	ANKS1B	12	99478723	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2395849	99478723	34373172	1336	29503											
ANKS1B	56899	broad.mit.edu	37	chr12	99837669	99837669	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaattttctgaacataaaTtgagatttcaacttttaaaa	3	4	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99837669	C	C	99837669	1	2	11	0	1	0	0	0	0	0	0	0	689	1508	52	5		5	ANKS1B	12	99837669	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	358946	99837669	34014226	1337	29504											
SCYL2	55681	broad.mit.edu	37	chr12	100676756	100676756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caatattgcagccatggagtCcatgcttaataaattgaaga	8	7	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100676756	A	A	100676756	3	1	11	1	0	0	0	0	1	0	0	0	14061	855	30	3	10	3	SCYL2	12	100676756	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	839087	100676756	33175139	1338	29505											
ANO4	121601	broad.mit.edu	37	chr12	101437376	101437376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtgataaatactgtcCattcatgaggctgtcagaca	10	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101437376	A	A	101437376	3	1	11	1	0	0	0	0	1	0	0	0	699	594	21	2	1151	2	ANO4	12	101437376	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	760620	101437376	32414519	1339	29506											
ANO4	121601	broad.mit.edu	37	chr12	101477326	101477326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagcctgggcacccaaaCccacttcattggttgactaa	7	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101477326	A	A	101477326	1	1	11	0	1	0	0	0	0	0	0	0	699	522	18	3		3	ANO4	12	101477326	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	39950	101477326	32374569	1340	29507											
ANO4	121601	broad.mit.edu	37	chr12	101477368	101477368	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtgtggcagctgttgactCtgttttatggtggggtaaaa	14	4	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101477368	A	A	101477368	1	1	11	0	1	0	0	0	0	0	0	0	699	928	32	3		3	ANO4	12	101477368	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	42	101477368	32374527	1341	29508											
SLC5A8	160728	broad.mit.edu	37	chr12	101581208	101581208	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctgtccaaggatcacagtCatggtacctggaatataggg	13	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101581208	A	A	101581208	3	1	11	1	0	0	0	0	1	0	0	0	14785	826	29	3	949	3	SLC5A8	12	101581208	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	103840	101581208	32270687	1342	29509											
SLC5A8	160728	broad.mit.edu	37	chr12	101584289	101584289	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaagaaatatatctctgcaCctgggattggttgacaccgt	9	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101584289	G	G	101584289	3	3	11	1	0	0	0	0	1	0	0	0	14785	507	18	4	1082	4	SLC5A8	12	101584289	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3081	101584289	32267606	1343	29510											
PAH	5053	broad.mit.edu	37	chr12	103260500	103260500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaagaggtctggtaccttTatgaatgctttgaatggggg	15	4	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103260500	C	C	103260500	1	2	11	0	1	0	0	0	0	0	0	0	11488	1769	61	5		5	PAH	12	103260500	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1676211	103260500	30591395	1344	29511											
STAB2	55576	broad.mit.edu	37	chr12	104054169	104054169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccatttacccaggttggcCccacttttcctgctgctact	6	16	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104054169	A	A	104054169	1	1	11	0	1	0	0	0	0	0	0	0	15356	638	22	2		2	STAB2	12	104054169	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	793669	104054169	29797726	1345	29512											
STAB2	55576	broad.mit.edu	37	chr12	104125389	104125389	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaacaaacaatggctaCatcaaatttagcaacttaat	5	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104125389	T	T	104125389	2	4	11	1	0	0	0	0	0	0	0	1	15356	489	17	4		4	STAB2	12	104125389	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	71220	104125389	29726506	1346	29513											
SVOP	55530	broad.mit.edu	37	chr12	109309473	109309473	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgaatgcaacccgagggctCtggggacagtcggcatgtag	16	10	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109309473	T	T	109309473	1	4	11	0	1	0	0	0	0	0	0	0	15541	928	32	4		4	SVOP	12	109309473	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	5184084	109309473	24542422	1347	29514											
SVOP	55530	broad.mit.edu	37	chr12	109332670	109332671	+	Frame_Shift_Ins	INS	-	T	T													agttgctatcctctttaaggINStggcgattgccttttcctgg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109332671	T	T	109332670	7	5	11	1	0	1	1	0	0	0	0	0	15541	1261	44	0	848	0	SVOP	12	109332670	Frame_Shift_Ins	INS	-	TCGA-05-4398-01A-01D-1265-08	23197	109332670	24519225	1348	29515											
HVCN1	84329	broad.mit.edu	37	chr12	111088015	111088015	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgttgaatcttggcggcCaattgtacattcatctgttt	10	7	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111088015	T	T	111088015	2	4	11	1	0	0	0	0	0	0	0	1	7532	593	21	4		4	HVCN1	12	111088015	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1755345	111088015	22763880	1349	29516											
MED13L	23389	broad.mit.edu	37	chr12	116420924	116420924	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattagtgaataacatacctCtcttgtccatcctgtgaggg	8	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116420924	A	A	116420924	3	1	11	1	0	0	0	0	1	0	0	0	9524	912	32	3	1723	3	MED13L	12	116420924	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5332909	116420924	17430971	1350	29517											
TAOK3	51347	broad.mit.edu	37	chr12	118619031	118619031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgacaattttacatagccCtataaaatctagaaacccaa	3	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118619031	A	A	118619031	1	1	11	0	1	0	0	0	0	0	0	0	15668	696	24	2		2	TAOK3	12	118619031	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2198107	118619031	15232864	1351	29518											
LRRC43	254050	broad.mit.edu	37	chr12	122669147	122669147	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgtggtgagccccggaGaggagacggtggaggccctg	20	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122669147	A	A	122669147	3	1	11	1	0	0	0	0	1	0	0	0	9088	943	33	4	238	4	LRRC43	12	122669147	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4050116	122669147	11182748	1352	29519											
LRRC43	254050	broad.mit.edu	37	chr12	122676147	122676147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccctaggagtatggggGgctcttgtgaaggctgaact	15	8	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122676147	T	T	122676147	1	4	11	0	1	0	0	0	0	0	0	0	9088	1247	43	2		2	LRRC43	12	122676147	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	7000	122676147	11175748	1353	29520											
CLIP1	6249	broad.mit.edu	37	chr12	122794255	122794255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgagcgtgctgccaaCagcagcagcacccagcatgg	12	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122794255	A	A	122794255	1	1	11	0	1	0	0	0	0	0	0	0	3564	493	17	3		3	CLIP1	12	122794255	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	118108	122794255	11057640	1354	29521											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124235838	124235838	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctttcggttatacaaggAttggtgtagaaaacacctcc	9	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124235838	C	C	124235838	1	2	11	0	1	0	0	0	0	0	0	0	1173	348	12	5		5	ATP6V0A2	12	124235838	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1441583	124235838	9616057	1355	29522											
AACS	65985	broad.mit.edu	37	chr12	125570743	125570743	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acctgtatcttgcttgtgttCcctgcgtctgttttccctgg	9	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125570743	T	T	125570743	1	4	11	0	1	0	0	0	0	0	0	0	9	870	30	4		4	AACS	12	125570743	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1334905	125570743	8281152	1356	29523											
AACS	65985	broad.mit.edu	37	chr12	125618604	125618604	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccaagaccgggggcatcgtCatgcttggccggaggtaagg	16	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125618604	T	T	125618604	2	4	11	1	0	0	0	0	0	0	0	1	9	813	29	4		4	AACS	12	125618604	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	47861	125618604	8233291	1357	29524											
TMEM132D	121256	broad.mit.edu	37	chr12	129822241	129822241	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagatcttggacactcccaAgtcagacgtgatctctccgg	9	12	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129822241	T	T	129822241	3	4	11	1	0	0	0	0	1	0	0	0	16170	69	3	5	2086	5	TMEM132D	12	129822241	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	4203637	129822241	4029654	1358	29525											
TMEM132D	121256	broad.mit.edu	37	chr12	130185164	130185164	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggagacgtccgcgttgttGatgtggtaggtcacggggag	18	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130185164	A	A	130185164	2	1	11	1	0	0	0	0	0	0	0	1	16170	1280	45	4		4	TMEM132D	12	130185164	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	362923	130185164	3666731	1359	29526											
EP400	57634	broad.mit.edu	37	chr12	132515720	132515720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagtcatctcccttcatGgtcaacagtgaggttagagg	10	9	5	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132515720	T	T	132515720	1	4	11	0	1	0	0	0	0	0	0	0	5191	1363	47	2		2	EP400	12	132515720	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2330556	132515720	1336175	1360	29527											
RNF17	56163	broad.mit.edu	37	chr13	25341404	25341404	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataataattaagaatttcatCaataggtcaccattgtgaac	5	6	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25341404	G	G	25341404	1	3	11	0	1	0	0	0	0	0	0	0	13572	841	29	4		4	RNF17	13	25341404	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08		25341404	89828474	1361	29528											
MTMR6	9107	broad.mit.edu	37	chr13	25840328	25840328	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcactcccatcctcttaTattcctcagcgagatcaatg	6	13	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25840328	C	C	25840328	3	2	11	1	0	0	0	0	1	0	0	0	10041	1406	49	5	1508	5	MTMR6	13	25840328	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	498924	25840328	89329550	1362	29529											
ATP8A2	51761	broad.mit.edu	37	chr13	26535737	26535737	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatggtcctgagctccgcaCacttctggttgggattattt	10	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26535737	T	T	26535737	3	4	11	1	0	0	0	0	1	0	0	0	1197	478	17	4	3342	4	ATP8A2	13	26535737	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	695409	26535737	88634141	1363	29530											
FRY	10129	broad.mit.edu	37	chr13	32836597	32836597	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatatgaataatctgcagatTtctgagggttcaaaggtgaa	11	4	3	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32836597	A	A	32836597	2	1	11	1	0	0	0	0	0	0	0	1	6123	1829	64	5		5	FRY	13	32836597	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	6300860	32836597	82333281	1364	29531											
SIAH3	283514	broad.mit.edu	37	chr13	46358215	46358215	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaaggaaagagaagaacgtCagtgcggggatgaggcccac	16	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46358215	T	T	46358215	1	4	11	0	1	0	0	0	0	0	0	0	14414	841	29	4		4	SIAH3	13	46358215	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	13521618	46358215	68811663	1365	29532											
LCP1	3936	broad.mit.edu	37	chr13	46716266	46716266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaacaaaaactgataggaCtgaaaaaaaaaaagcagaaa	7	4	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46716266	A	A	46716266	1	1	11	0	1	0	0	0	0	0	0	0	8763	580	20	3		3	LCP1	13	46716266	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	358051	46716266	68453612	1366	29533											
LCP1	3936	broad.mit.edu	37	chr13	46724979	46724979	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taccctggaacttctgaagaGaggaagccccaaatctttat	8	10	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46724979	T	T	46724979	1	4	11	0	1	0	0	0	0	0	0	0	8763	957	33	3		3	LCP1	13	46724979	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	8713	46724979	68444899	1367	29534											
SETDB2	83852	broad.mit.edu	37	chr13	50062844	50062844	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaattatgaggaaaatAaacagactctaaagtcagac	6	6	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50062844	G	G	50062844	1	3	11	0	1	0	0	0	0	0	0	0	14252	377	13	5		5	SETDB2	13	50062844	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	3337865	50062844	65107034	1368	29535											
FAM124A	220108	broad.mit.edu	37	chr13	51854668	51854668	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtcattccactcctttgcCgagcactgctgtaccaagcc	7	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51854668	T	T	51854668	3	4	11	1	0	0	0	0	1	0	0	0	5471	652	23	4	1043	4	FAM124A	13	51854668	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1791824	51854668	63315210	1369	29536											
PCDH17	27253	broad.mit.edu	37	chr13	58207106	58207106	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatcgaaatggacatctcGgagaacgctgctccgggcac	12	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207106	T	T	58207106	2	4	11	1	0	0	0	0	0	0	0	1	11606	1103	39	1		1	PCDH17	13	58207106	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	6352438	58207106	56962772	1370	29537											
KLHL1	57626	broad.mit.edu	37	chr13	70293455	70293455	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgaatcaggcatcaatgtGatttgcactgtctctttcgc	8	10	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70293455	C	C	70293455	1	2	11	0	1	0	0	0	0	0	0	0	8436	1305	45	4		4	KLHL1	13	70293455	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	12086349	70293455	44876423	1371	29538											
KLF12	11278	broad.mit.edu	37	chr13	74289627	74289627	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggattcagaccgtctctggCgtcttgtgctctcaatacta	10	11	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74289627	T	T	74289627	3	4	11	1	0	0	0	0	1	0	0	0	8411	768	27	4	311	4	KLF12	13	74289627	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3996172	74289627	40880251	1372	29539											
TBC1D4	9882	broad.mit.edu	37	chr13	75901997	75901997	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaattaagtgcttcgtgtGatttaaaattttacttcaaa	5	4	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75901997	A	A	75901997	1	1	11	0	1	0	0	0	0	0	0	0	15744	1305	45	4		4	TBC1D4	13	75901997	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1612370	75901997	39267881	1373	29540											
NALCN	259232	broad.mit.edu	37	chr13	101727035	101727035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggaccaggggtgggaagCggggagacagagagagagag	23	4	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101727035	A	A	101727035	1	1	11	0	1	0	0	0	0	0	0	0	10242	783	27	3		3	NALCN	13	101727035	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	25825038	101727035	13442843	1374	29541											
NALCN	259232	broad.mit.edu	37	chr13	101944568	101944568	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttcttagtacaattcttcGcagtaccttcacaagccagg	6	12	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101944568	C	C	101944568	1	2	11	0	1	0	0	0	0	0	0	0	10242	1102	38	4		4	NALCN	13	101944568	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	217533	101944568	13225310	1375	29542											
ITGBL1	9358	broad.mit.edu	37	chr13	102231721	102231721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattccagtgcgatatcaccCcctgggaaagcaagcgaaga	10	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102231721	A	A	102231721	3	1	11	1	0	0	0	0	1	0	0	0	7972	623	22	2	688	2	ITGBL1	13	102231721	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	287153	102231721	12938157	1376	29543											
MYO16	23026	broad.mit.edu	37	chr13	109704903	109704903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttttttaaaaaaaagcaCaattttaaataccaaggaaa	3	4	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109704903	T	T	109704903	1	4	11	0	1	0	0	0	0	0	0	0	10158	493	17	4		4	MYO16	13	109704903	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	7473182	109704903	5464975	1377	29544											
COL4A1	1282	broad.mit.edu	37	chr13	110831280	110831280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcactcacctgacaacccCggtggtccctgtcctccagg	9	17	2	1	rs144401828	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110831280	A	A	110831280	2	1	11	1	0	0	0	0	0	0	0	1	3721	639	23	1		1	COL4A1	13	110831280	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1126377	110831280	4338598	1378	29545											
COL4A2	1284	broad.mit.edu	37	chr13	111082234	111082234	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatatctgctaattagggGccccaaggaccaaaagggca	10	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111082234	T	T	111082234	2	4	11	1	0	0	0	0	0	0	0	1	3722	1190	42	3		3	COL4A2	13	111082234	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	250954	111082234	4087644	1379	29546											
ATP11A	23250	broad.mit.edu	37	chr13	113485908	113485908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtgtgagtgagtgggcGgctgtgcatgctgagtccac	17	7	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113485908	T	T	113485908	1	4	11	0	1	0	0	0	0	0	0	0	1123	1131	39	1		1	ATP11A	13	113485908	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2403674	113485908	1683970	1380	29547											
F10	2159	broad.mit.edu	37	chr13	113803629	113803629	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggggacagcgggggccCgcacgtcacccgcttcaagg	16	15	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113803629	T	T	113803629	3	4	11	1	0	0	0	0	1	0	0	0	5379	652	23	4	1295	4	F10	13	113803629	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	317721	113803629	1366249	1381	29548											
OR4K5	79317	broad.mit.edu	37	chr14	20389623	20389623	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgtcctaaaccccattatTtatacactaaggaataggga	6	11	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20389623	G	G	20389623	3	3	11	1	0	0	0	0	1	0	0	0	11167	1829	64	5	860	5	OR4K5	14	20389623	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08		20389623	86959917	1382	29549											
OR4K5	79317	broad.mit.edu	37	chr14	20389719	20389719	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgaaatgtcactagtagtGagaacttcctttcattaaga	7	7	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20389719	T	T	20389719	2	4	11	1	0	0	0	0	0	0	0	1	11167	1277	45	3		3	OR4K5	14	20389719	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	96	20389719	86959821	1383	29550											
RNASE12	493901	broad.mit.edu	37	chr14	21058517	21058517	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacccctctgtgggggaataGtggtacctgcaggcagggta	15	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21058517	C	C	21058517	3	2	11	1	0	0	0	0	1	0	0	0	13513	1020	36	4	81	4	RNASE12	14	21058517	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	668798	21058517	86291023	1384	29551											
RNASE7	84659	broad.mit.edu	37	chr14	21511112	21511112	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgaacacctctgtcccagCgacccctgccctccatcctg	6	20	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21511112	G	G	21511112	1	3	11	0	1	0	0	0	0	0	0	0	13519	782	27	4		4	RNASE7	14	21511112	5'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	452595	21511112	85838428	1385	29552											
SLC7A7	9056	broad.mit.edu	37	chr14	23249156	23249156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccaagtctaacaatgcCtgcaacgatgaccgcgatca	9	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23249156	A	A	23249156	3	1	11	1	0	0	0	0	1	0	0	0	14817	681	24	2	963	2	SLC7A7	14	23249156	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1738044	23249156	84100384	1386	29553											
MYH6	4624	broad.mit.edu	37	chr14	23866151	23866151	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccccctgttctatgagctCtggggcaccctcatacccac	7	18	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23866151	G	G	23866151	1	3	11	0	1	0	0	0	0	0	0	0	10132	928	32	4		4	MYH6	14	23866151	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	616995	23866151	83483389	1387	29554											
MYH7	4625	broad.mit.edu	37	chr14	23896172	23896172	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaagagagatggagagaAttcgagaagtcacagagatg	15	3	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23896172	T	T	23896172	1	4	11	0	1	0	0	0	0	0	0	0	10133	116	4	5		5	MYH7	14	23896172	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	30021	23896172	83453368	1388	29555											
AP1G2	8906	broad.mit.edu	37	chr14	24035553	24035553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggggccaggtctcggcaCatctcagcagagcccatggt	13	13	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24035553	A	A	24035553	3	1	11	1	0	0	0	0	1	0	0	0	735	478	17	3	2028	3	AP1G2	14	24035553	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	139381	24035553	83313987	1389	29556											
JPH4	84502	broad.mit.edu	37	chr14	24040242	24040242	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggaccagcatggcgatGggctcaggctccgtgcctgc	14	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24040242	T	T	24040242	2	4	11	1	0	0	0	0	0	0	0	1	8033	1335	47	2		2	JPH4	14	24040242	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	4689	24040242	83309298	1390	29557											
CPNE6	9362	broad.mit.edu	37	chr14	24544505	24544505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccacaaataccccaccCccagaatcccacccagatcc	5	20	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24544505	A	A	24544505	1	1	11	0	1	0	0	0	0	0	0	0	3848	638	22	2		2	CPNE6	14	24544505	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	504263	24544505	82805035	1391	29558											
RABGGTA	5875	broad.mit.edu	37	chr14	24738353	24738353	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggtcagtgaagaaggcattCtgcaccagctccagctctgt	12	11	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24738353	G	G	24738353	3	3	11	1	0	0	0	0	1	0	0	0	13075	912	32	4	1099	4	RABGGTA	14	24738353	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	193848	24738353	82611187	1392	29559											
RIPK3	11035	broad.mit.edu	37	chr14	24807533	24807533	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaagctgaggatcggtccAatcactggcaagactccttt	9	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24807533	T	T	24807533	1	4	11	0	1	0	0	0	0	0	0	0	13493	145	5	5		5	RIPK3	14	24807533	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	69180	24807533	82542007	1393	29560											
NOVA1	4857	broad.mit.edu	37	chr14	26917440	26917440	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatccttggatccatctgTggacttttctgttcctagaa	7	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26917440	C	C	26917440	3	2	11	1	0	0	0	0	1	0	0	0	10649	1696	59	5	278	5	NOVA1	14	26917440	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	2109907	26917440	80432100	1394	29561											
HEATR5A	25938	broad.mit.edu	37	chr14	31789588	31789588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaacaccgctccaatgcCagcccctgaatcagccacac	6	19	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31789588	T	T	31789588	1	4	11	0	1	0	0	0	0	0	0	0	7098	609	21	4		4	HEATR5A	14	31789588	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4872148	31789588	75559952	1395	29562											
FSCB	84075	broad.mit.edu	37	chr14	44975130	44975130	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaaggggactcttcagctGatggaggcagaatttcagcc	13	9	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44975130	A	A	44975130	3	1	11	1	0	0	0	0	1	0	0	0	6126	1294	45	4	1420	4	FSCB	14	44975130	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	13185542	44975130	62374410	1396	29563											
FRMD6	122786	broad.mit.edu	37	chr14	52186887	52186887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagcatgaaacacaagcGcctgtcccgtcattccaccg	10	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52186887	T	T	52186887	3	4	11	1	0	0	0	0	1	0	0	0	6114	1087	38	3	1153	3	FRMD6	14	52186887	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	7211757	52186887	55162653	1397	29564											
STYX	6815	broad.mit.edu	37	chr14	53223377	53223377	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaatttatttatgattTgacttcttagttgtgctttt	5	3	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53223377	A	A	53223377	1	1	11	0	1	0	0	0	0	0	0	0	15478	1827	63	5		5	STYX	14	53223377	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1036490	53223377	54126163	1398	29565											
FERMT2	10979	broad.mit.edu	37	chr14	53326524	53326524	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtgttctctctaaccctAaaagagtactattctttttt	4	8	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53326524	G	G	53326524	1	3	11	0	1	0	0	0	0	0	0	0	5875	377	13	5		5	FERMT2	14	53326524	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	103147	53326524	54023016	1399	29566											
SYNE2	23224	broad.mit.edu	37	chr14	64608873	64608873	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaatcagaggggtaatgctGgacaaagggacacataggat	13	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64608873	A	A	64608873	1	1	11	0	1	0	0	0	0	0	0	0	15565	1363	47	4		4	SYNE2	14	64608873	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	11282349	64608873	42740667	1400	29567											
SLC8A3	6547	broad.mit.edu	37	chr14	70633906	70633906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtcaggagtacagcccCacagttctccaggcactggt	10	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70633906	A	A	70633906	3	1	11	1	0	0	0	0	1	0	0	0	14822	594	21	2	1688	2	SLC8A3	14	70633906	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	6025033	70633906	36715634	1401	29568											
PCNX	22990	broad.mit.edu	37	chr14	71524403	71524403	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttatagagataggcaatgGtctggtcacttttcagctgc	10	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71524403	C	C	71524403	3	2	11	1	0	0	0	0	1	0	0	0	11685	1261	44	4	4916	4	PCNX	14	71524403	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	890497	71524403	35825137	1402	29569											
DPF3	8110	broad.mit.edu	37	chr14	73159612	73159612	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagcctagggttgggctgaGctgcaggggcagctggctgg	19	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73159612	A	A	73159612	1	1	11	0	1	0	0	0	0	0	0	0	4758	986	34	4		4	DPF3	14	73159612	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1635209	73159612	34189928	1403	29570											
C14orf43	91748	broad.mit.edu	37	chr14	74206175	74206175	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtggcatcattggtcgCacatagcggtccagctgtgg	13	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74206175	A	A	74206175	2	1	11	1	0	0	0	0	0	0	0	1	1787	697	25	3		3	C14orf43	14	74206175	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1046563	74206175	33143365	1404	29571											
C14orf166B	145497	broad.mit.edu	37	chr14	77297798	77297798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcccaagattcagagggcCcctcctatggagcctaaacc	10	14	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77297798	T	T	77297798	1	4	11	0	1	0	0	0	0	0	0	0	1770	638	22	4		4	C14orf166B	14	77297798	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3091623	77297798	30051742	1405	29572											
TMEM63C	57156	broad.mit.edu	37	chr14	77685076	77685076	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatcccacaactccccatCgggcttctgtgttttgcaaa	6	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77685076	A	A	77685076	1	1	11	0	1	0	0	0	0	0	0	0	16315	899	31	3		3	TMEM63C	14	77685076	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	387278	77685076	29664464	1406	29573											
C14orf145	145508	broad.mit.edu	37	chr14	81227931	81227931	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttccatcctccttaagtgCtcctcttcaatgcttatatg	4	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81227931	G	G	81227931	3	3	11	1	0	0	0	0	1	0	0	0	1762	796	28	4	917	4	C14orf145	14	81227931	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	3542855	81227931	26121609	1407	29574											
RIN3	79890	broad.mit.edu	37	chr14	93118589	93118589	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgagagggtgtccttagaaGaccaaagtccggggatggcg	16	9	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93118589	T	T	93118589	3	4	11	1	0	0	0	0	1	0	0	0	13484	942	33	3	1217	3	RIN3	14	93118589	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	11890658	93118589	14230951	1408	29575											
KIAA1409	57578	broad.mit.edu	37	chr14	94039267	94039267	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atagcaaagacttcgtaagtCcccatgtttgccaagaaagt	8	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94039267	A	A	94039267	1	1	11	0	1	0	0	0	0	0	0	0	8300	870	30	3		3	KIAA1409	14	94039267	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	920678	94039267	13310273	1409	29576											
AK7	122481	broad.mit.edu	37	chr14	96904116	96904116	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactactaaaataatctggtTcagtatgactaataatatta	4	5	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96904116	A	A	96904116	1	1	11	0	1	0	0	0	0	0	0	0	444	1798	62	5		5	AK7	14	96904116	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2864849	96904116	10445424	1410	29577											
RTL1	388015	broad.mit.edu	37	chr14	101349423	101349423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatcatctgcttccttcGggttaaacacgtcggccagg	9	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101349423	T	T	101349423	3	4	11	1	0	0	0	0	1	0	0	0	13835	1116	39	1	2377	1	RTL1	14	101349423	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4445307	101349423	6000117	1411	29578											
AHNAK2	113146	broad.mit.edu	37	chr14	105420104	105420104	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcagtgatccttgtccTctgtagtccttcctctccat	5	15	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105420104	C	C	105420104	3	2	11	1	0	0	0	0	1	0	0	0	415	1550	54	5	15707	5	AHNAK2	14	105420104	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	4070681	105420104	1929436	1412	29579											
AHNAK2	113146	broad.mit.edu	37	chr14	105420649	105420649	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctcgatcctgttctgccCtctcctctctcctgctgcct	5	19	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105420649	G	G	105420649	3	3	11	1	0	0	0	0	1	0	0	0	415	681	24	4	16252	4	AHNAK2	14	105420649	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	545	105420649	1928891	1413	29580											
GABRG3	2567	broad.mit.edu	37	chr15	27586155	27586155	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagaagggcaagatggctgGaacactgtgctgagaaataa	13	5	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27586155	T	T	27586155	1	4	11	0	1	0	0	0	0	0	0	0	6233	1189	41	3		3	GABRG3	15	27586155	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08		27586155	74945237	1414	29581											
OCA2	4948	broad.mit.edu	37	chr15	28195735	28195735	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagttggatttgagattatCaagagaaagaaatggagggg	14	2	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28195735	T	T	28195735	1	4	11	0	1	0	0	0	0	0	0	0	10910	841	29	4		4	OCA2	15	28195735	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	609580	28195735	74335657	1415	29582											
HERC2	8924	broad.mit.edu	37	chr15	28359782	28359782	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttatcgccagccgcacgTactccgcgcggttgtccagg	12	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28359782	C	C	28359782	3	2	11	1	0	0	0	0	1	0	0	0	7125	1638	57	5	631	5	HERC2	15	28359782	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	164047	28359782	74171610	1416	29583											
TRPM1	4308	broad.mit.edu	37	chr15	31324994	31324994	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatccacacagtagatcacCcggccatagcccatgtaggg	9	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324994	A	A	31324994	2	1	11	1	0	0	0	0	0	0	0	1	16710	610	22	2		2	TRPM1	15	31324994	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2965212	31324994	71206398	1417	29584											
C15orf55	256646	broad.mit.edu	37	chr15	34647571	34647571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtatctgtctttgctacCatcgcttaaactacttgctt	6	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34647571	A	A	34647571	1	1	11	0	1	0	0	0	0	0	0	0	1816	609	21	2		2	C15orf55	15	34647571	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3322577	34647571	67883821	1418	29585											
AQR	9716	broad.mit.edu	37	chr15	35168171	35168171	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gataaaagtttctatctccaGaatctgagcagcctcttcca	6	11	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35168171	T	T	35168171	3	4	11	1	0	0	0	0	1	0	0	0	837	933	33	3	1287	3	AQR	15	35168171	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	520600	35168171	67363221	1419	29586											
DISP2	85455	broad.mit.edu	37	chr15	40660703	40660703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaacagcagcctggtgaGggaccctgccttctcggcca	12	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40660703	T	T	40660703	3	4	11	1	0	0	0	0	1	0	0	0	4580	1000	35	2	2420	2	DISP2	15	40660703	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	5492532	40660703	61870689	1420	29587											
MGA	23269	broad.mit.edu	37	chr15	42042588	42042588	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgttcctaggagagctgcAaaaagcagcagagggaatgg	14	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42042588	G	G	42042588	2	3	11	1	0	0	0	0	0	0	0	1	9633	117	5	5		5	MGA	15	42042588	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	1381885	42042588	60488804	1421	29588											
TMEM87A	25963	broad.mit.edu	37	chr15	42511790	42511790	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catacttactgctttgttaaCtttactatttccattgggtt	5	8	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42511790	T	T	42511790	3	4	11	1	0	0	0	0	1	0	0	0	16333	565	20	4	155	4	TMEM87A	15	42511790	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	469202	42511790	60019602	1422	29589											
TGM5	9333	broad.mit.edu	37	chr15	43552791	43552791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagccctgcaatggggcaGccagggttagacaaaatagt	12	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43552791	T	T	43552791	1	4	11	0	1	0	0	0	0	0	0	0	15956	986	34	3		3	TGM5	15	43552791	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1041001	43552791	58978601	1423	29590											
ELL3	80237	broad.mit.edu	37	chr15	44090525	44090525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagtgctgggattacagGcgtgagccactgcacccggc	13	13	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44090525	T	T	44090525	1	4	11	0	1	0	0	0	0	0	0	0	5106	1218	42	3		3	ELL3	15	44090525	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	537734	44090525	58440867	1424	29591											
CASC4	113201	broad.mit.edu	37	chr15	44581416	44581416	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtggcccgcgggcggctGgaaaagcgcaattcggacct	16	11	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44581416	A	A	44581416	2	1	11	1	0	0	0	0	0	0	0	1	2688	1335	47	4		4	CASC4	15	44581416	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	490891	44581416	57949976	1425	29592											
SHF	90525	broad.mit.edu	37	chr15	45491056	45491056	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcttcttctgttttggccCattagccacgggctgtggtg	11	10	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45491056	T	T	45491056	3	4	11	1	0	0	0	0	1	0	0	0	14390	594	21	4	1082	4	SHF	15	45491056	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	909640	45491056	57040336	1426	29593											
SEMA6D	80031	broad.mit.edu	37	chr15	48022844	48022844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggtctgtacttgtgggCcagcttatgcagctcgctgt	12	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48022844	A	A	48022844	1	1	11	0	1	0	0	0	0	0	0	0	14155	754	26	3		3	SEMA6D	15	48022844	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2531788	48022844	54508548	1427	29594											
SLC12A1	6557	broad.mit.edu	37	chr15	48539564	48539564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacaacatctacaaagccCtgcagttttttgcaaaggga	9	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48539564	A	A	48539564	3	1	11	1	0	0	0	0	1	0	0	0	14495	680	24	2	1737	2	SLC12A1	15	48539564	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	516720	48539564	53991828	1428	29595											
MYO5A	4644	broad.mit.edu	37	chr15	52609193	52609193	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacttctttacttccctaaaGatcatctttgatgaatgtta	5	8	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52609193	A	A	52609193	1	1	11	0	1	0	0	0	0	0	0	0	10172	957	33	4		4	MYO5A	15	52609193	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4069629	52609193	49922199	1429	29596											
MYO5A	4644	broad.mit.edu	37	chr15	52646197	52646197	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacatgtccagaggtaccttCttctcacttggttcctaaac	7	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52646197	T	T	52646197	2	4	11	1	0	0	0	0	0	0	0	1	10172	912	32	4		4	MYO5A	15	52646197	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	37004	52646197	49885195	1430	29597											
AQP9	366	broad.mit.edu	37	chr15	58430752	58430752	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtagaaacaggagtcctcaGagaagccccaagatgcagcc	12	11	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58430752	C	C	58430752	1	2	11	0	1	0	0	0	0	0	0	0	835	957	33	4		4	AQP9	15	58430752	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	5784555	58430752	44100640	1431	29598											
RNF111	54778	broad.mit.edu	37	chr15	59323058	59323058	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatataacgagctctacAccttaaaagtggatatgaag	8	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59323058	G	G	59323058	3	3	11	1	0	0	0	0	1	0	0	0	13536	159	6	5	39	5	RNF111	15	59323058	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	892306	59323058	43208334	1432	29599											
NARG2	79664	broad.mit.edu	37	chr15	60768354	60768354	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcttaaggccatttttGggggaaatatccctgtgaaa	10	6	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60768354	T	T	60768354	2	4	11	1	0	0	0	0	0	0	0	1	10263	1335	47	2		2	NARG2	15	60768354	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1445296	60768354	41763038	1433	29600											
PARP16	54956	broad.mit.edu	37	chr15	65559014	65559014	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtctcataaaatttggcGttggctgggtcaaagtactc	11	7	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65559014	A	A	65559014	2	1	11	1	0	0	0	0	0	0	0	1	11554	1136	40	4		4	PARP16	15	65559014	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	4790660	65559014	36972378	1434	29601											
IGDCC4	57722	broad.mit.edu	37	chr15	65681620	65681620	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggggctgggagccactcAcggtcaggcagggtggagcg	19	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65681620	G	G	65681620	5	3	11	1	0	0	0	0	0	0	1	0	7639	173	6	5	1242	5	IGDCC4	15	65681620	Splice_Site	SNP	A	TCGA-05-4398-01A-01D-1265-08	122606	65681620	36849772	1435	29602											
TIPIN	54962	broad.mit.edu	37	chr15	66641611	66641611	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaactaaatctaccctaccAtttagcatgtgaatgatatt	4	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66641611	G	G	66641611	1	3	11	0	1	0	0	0	0	0	0	0	16048	232	8	5		5	TIPIN	15	66641611	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	959991	66641611	35889781	1436	29603											
IQCH	64799	broad.mit.edu	37	chr15	67677159	67677159	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggttgtttctgtaagatgCttcagagaaaattttttcct	9	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67677159	T	T	67677159	1	4	11	0	1	0	0	0	0	0	0	0	7881	812	28	4		4	IQCH	15	67677159	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1035548	67677159	34854233	1437	29604											
TLE3	7090	broad.mit.edu	37	chr15	70342695	70342695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgctccgacctggagcaCagtgcggtgaagaggaggtg	17	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70342695	A	A	70342695	1	1	11	0	1	0	0	0	0	0	0	0	16063	493	17	3		3	TLE3	15	70342695	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2665536	70342695	32188697	1438	29605											
LARP6	55323	broad.mit.edu	37	chr15	71124814	71124814	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggccgcgtgccgtcggccCgccataggggatgtggggtt	19	11	0	0	rs148356697		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71124814	T	T	71124814	2	4	11	1	0	0	0	0	0	0	0	1	8704	639	23	4		4	LARP6	15	71124814	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	782119	71124814	31406578	1439	29606											
PARP6	56965	broad.mit.edu	37	chr15	72543436	72543436	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaggcccaaagactaagttGatggacagagcaatgtaggc	12	7	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72543436	C	C	72543436	1	2	11	0	1	0	0	0	0	0	0	0	11558	1305	45	4		4	PARP6	15	72543436	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1418622	72543436	29987956	1440	29607											
HEXA	3073	broad.mit.edu	37	chr15	72639969	72639969	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagaggcagggaggagcTggggagaccagagggaggca	21	6	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72639969	A	A	72639969	1	1	11	0	1	0	0	0	0	0	0	0	7140	1595	55	5		5	HEXA	15	72639969	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	96533	72639969	29891423	1441	29608											
CSPG4	1464	broad.mit.edu	37	chr15	75968002	75968002	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctggccaggcacagctgtGagcgggatggcctggcctgg	17	13	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75968002	T	T	75968002	2	4	11	1	0	0	0	0	0	0	0	1	3994	1277	45	3		3	CSPG4	15	75968002	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3328033	75968002	26563390	1442	29609											
CSPG4	1464	broad.mit.edu	37	chr15	75968734	75968734	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatgcagcagagccctcacAgtgacgttcactacggctga	10	13	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75968734	T	T	75968734	2	4	11	1	0	0	0	0	0	0	0	1	3994	175	7	5		5	CSPG4	15	75968734	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	732	75968734	26562658	1443	29610											
C15orf27	123591	broad.mit.edu	37	chr15	76463288	76463288	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgactgacccctggtcccgGacacacggcagggcccaggg	14	16	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76463288	T	T	76463288	1	4	11	0	1	0	0	0	0	0	0	0	1801	1189	41	3		3	C15orf27	15	76463288	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	494554	76463288	26068104	1444	29611											
SCAPER	49855	broad.mit.edu	37	chr15	77134323	77134324	+	Intron	DNP	GG	AA	AA													ataaataaaagggcttccagGgactggattttttataaaga							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	77134324	AA	AA	77134323	1	1	11	0	1	0	0	0	0	0	0	0	13990	1247	43	4		4	SCAPER	15	77134323	Intron	DNP	GG	TCGA-05-4398-01A-01D-1265-08	671035	77134323	25397069	1445	29612											
KIAA1024	23251	broad.mit.edu	37	chr15	79748634	79748634	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcttgccaaactgagaagtGtgctcttctacacagcttgt	9	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79748634	C	C	79748634	3	2	11	1	0	0	0	0	1	0	0	0	8275	1377	48	4	147	4	KIAA1024	15	79748634	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2614311	79748634	22782758	1446	29613											
IL16	3603	broad.mit.edu	37	chr15	81582955	81582955	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggatttatccattaactcAtcctctatccaaggaatagt	5	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81582955	G	G	81582955	1	3	11	0	1	0	0	0	0	0	0	0	7703	232	8	5		5	IL16	15	81582955	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1834321	81582955	20948437	1447	29614											
ALPK3	57538	broad.mit.edu	37	chr15	85383141	85383141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcggtgcctggggaggtcGacactctgcgcaagctcagc	16	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85383141	T	T	85383141	3	4	11	1	0	0	0	0	1	0	0	0	546	1058	37	3	1255	3	ALPK3	15	85383141	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3800186	85383141	17148251	1448	29615											
AKAP13	11214	broad.mit.edu	37	chr15	86251228	86251228	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgctttgtccatgtgacCttgggtttgctttcttttca	9	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86251228	T	T	86251228	1	4	11	0	1	0	0	0	0	0	0	0	449	696	24	4		4	AKAP13	15	86251228	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	868087	86251228	16280164	1449	29616											
ACAN	176	broad.mit.edu	37	chr15	89399982	89399982	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactgctgcccctggagtagAggacatcagcgggcttcctt	13	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89399982	T	T	89399982	3	4	11	1	0	0	0	0	1	0	0	0	117	304	11	5	4208	5	ACAN	15	89399982	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	3148754	89399982	13131410	1450	29617											
ABHD2	11057	broad.mit.edu	37	chr15	89736526	89736526	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgttggtgcatgaaagtcttCtaaccattccaaaatctctt	6	10	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89736526	G	G	89736526	3	3	11	1	0	0	0	0	1	0	0	0	82	912	32	4	1087	4	ABHD2	15	89736526	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	336544	89736526	12794866	1451	29618											
RHCG	51458	broad.mit.edu	37	chr15	90020724	90020724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagggggaagctccatcCcaccgcacctcctccacatt	9	16	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90020724	A	A	90020724	1	1	11	0	1	0	0	0	0	0	0	0	13435	638	22	2		2	RHCG	15	90020724	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	284198	90020724	12510668	1452	29619											
ANPEP	290	broad.mit.edu	37	chr15	90349374	90349374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtcttgtcaatgtcgggGggctgggagcctcccacacc	13	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90349374	T	T	90349374	2	4	11	1	0	0	0	0	0	0	0	1	710	1219	43	2		2	ANPEP	15	90349374	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	328650	90349374	12182018	1453	29620											
MSLN	10232	broad.mit.edu	37	chr16	814223	814223	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctctgcagtgcccaccttgCcaccacggtcccctctgtcc	8	20	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	814223	G	G	814223	1	3	11	0	1	0	0	0	0	0	0	0	9975	754	26	4		4	MSLN	16	814223	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08		814223	89540530	1454	29621											
MSLN	10232	broad.mit.edu	37	chr16	814999	814999	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcccgaggggggctcccgAgcgacagcggctgctgcctg	17	15	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	814999	T	T	814999	3	4	11	1	0	0	0	0	1	0	0	0	9975	304	11	5	495	5	MSLN	16	814999	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	776	814999	89539754	1455	29622											
CACNA1H	8912	broad.mit.edu	37	chr16	1245923	1245923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccctcggccccgccccCagcatgatggagtactcgtt	9	19	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1245923	A	A	1245923	1	1	11	0	1	0	0	0	0	0	0	0	2571	609	21	2		2	CACNA1H	16	1245923	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	430924	1245923	89108830	1456	29623											
TPSD1	23430	broad.mit.edu	37	chr16	1308351	1308351	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtgactctggagggcccCtggtctgcaaggtgaatggc	17	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1308351	T	T	1308351	2	4	11	1	0	0	0	0	0	0	0	1	16549	680	24	4		4	TPSD1	16	1308351	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	62428	1308351	89046402	1457	29624											
CLCN7	1186	broad.mit.edu	37	chr16	1511719	1511719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcacagttgacaaggcCacaaggagagaggcccctct	12	11	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1511719	A	A	1511719	1	1	11	0	1	0	0	0	0	0	0	0	3499	609	21	2		2	CLCN7	16	1511719	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	203368	1511719	88843034	1458	29625											
EME2	197342	broad.mit.edu	37	chr16	1826131	1826131	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgaccttcctgtgccGcccagtgaaggcgggcgtcc	14	16	0	1	rs151082077	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1826131	T	T	1826131	2	4	11	1	0	0	0	0	0	0	0	1	5131	1074	38	3		3	EME2	16	1826131	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	314412	1826131	88528622	1459	29626											
ABCA3	21	broad.mit.edu	37	chr16	2331550	2331550	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgcatgcgtgaacccagcCgcagggcggcttccgtggag	15	14	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2331550	T	T	2331550	1	4	11	0	1	0	0	0	0	0	0	0	33	667	23	4		4	ABCA3	16	2331550	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	505419	2331550	88023203	1460	29627											
CCNF	899	broad.mit.edu	37	chr16	2485898	2485898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctcaccccacctgcatGttggcgcttcagataagtgt	9	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2485898	T	T	2485898	1	4	11	0	1	0	0	0	0	0	0	0	2952	1392	48	3		3	CCNF	16	2485898	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	154348	2485898	87868855	1461	29628											
PKMYT1	9088	broad.mit.edu	37	chr16	3024067	3024067	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaaactgcagggtggtgagCcaggcggggtggctggcggg	22	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3024067	G	G	3024067	3	3	11	1	0	0	0	0	1	0	0	0	12073	739	26	4	305	4	PKMYT1	16	3024067	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	538169	3024067	87330686	1462	29629											
PKMYT1	9088	broad.mit.edu	37	chr16	3025738	3025738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcggccaacttgcgggCccggtccttggggccccgga	14	17	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3025738	A	A	3025738	3	1	11	1	0	0	0	0	1	0	0	0	12073	739	26	3	1107	3	PKMYT1	16	3025738	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1671	3025738	87329015	1463	29630											
A2BP1	54715	broad.mit.edu	37	chr16	7680494	7680494	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccttgtcctgcgctctgGgatgtggctatgttttcatt	10	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7680494	T	T	7680494	1	4	11	0	1	0	0	0	0	0	0	0	3	1247	43	2		2	A2BP1	16	7680494	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4654756	7680494	82674259	1464	29631											
A2BP1	54715	broad.mit.edu	37	chr16	7726663	7726663	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactaagctttcattaacctCaactttagctcagtagattt	4	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7726663	A	A	7726663	1	1	11	0	1	0	0	0	0	0	0	0	3	841	29	3		3	A2BP1	16	7726663	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	46169	7726663	82628090	1465	29632											
TMEM186	25880	broad.mit.edu	37	chr16	8889820	8889820	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagttgttcacttgagcaTctgatgtaccccaaacacct	6	14	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8889820	A	A	8889820	3	1	11	1	0	0	0	0	1	0	0	0	16231	1435	50	5	14	5	TMEM186	16	8889820	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	1163157	8889820	81464933	1466	29633											
ERCC4	2072	broad.mit.edu	37	chr16	14020371	14020371	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgtgatgaatgaatggCaattacctacctgttctgta	8	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14020371	A	A	14020371	1	1	11	0	1	0	0	0	0	0	0	0	5257	725	25	3		3	ERCC4	16	14020371	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	5130551	14020371	76334382	1467	29634											
ERCC4	2072	broad.mit.edu	37	chr16	14024784	14024784	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaataatattctaagagctGatttgaataaagtgttaggt	8	3	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14024784	A	A	14024784	1	1	11	0	1	0	0	0	0	0	0	0	5257	1305	45	4		4	ERCC4	16	14024784	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4413	14024784	76329969	1468	29635											
MKL2	57496	broad.mit.edu	37	chr16	14355355	14355355	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaagaacatgaagattctAaaaggtcagtttttagagat	8	3	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14355355	G	G	14355355	1	3	11	0	1	0	0	0	0	0	0	0	9695	377	13	5		5	MKL2	16	14355355	3'UTR	SNP	A	TCGA-05-4398-01A-01D-1265-08	330571	14355355	75999398	1469	29636											
NOMO1	23420	broad.mit.edu	37	chr16	14976435	14976435	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttctagagagctgactcCtgagtttttttgcagccggg	11	10	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14976435	T	T	14976435	1	4	11	0	1	0	0	0	0	0	0	0	10626	696	24	4		4	NOMO1	16	14976435	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	621080	14976435	75378318	1470	29637											
NOMO1	23420	broad.mit.edu	37	chr16	14989539	14989539	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtctcacttgggacagGccacagccaggggtccggcc	14	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14989539	A	A	14989539	1	1	11	0	1	0	0	0	0	0	0	0	10626	1218	42	4		4	NOMO1	16	14989539	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	13104	14989539	75365214	1471	29638											
RRN3	54700	broad.mit.edu	37	chr16	15165037	15165037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataatttccagcagcctgCctgatgatggcaggattact	9	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15165037	A	A	15165037	3	1	11	1	0	0	0	0	1	0	0	0	13795	738	26	3	779	3	RRN3	16	15165037	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	175498	15165037	75189716	1472	29639											
KIAA0430	9665	broad.mit.edu	37	chr16	15703455	15703455	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgcaagtttgcactgccgGccaaagtggtgatggtaaga	13	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15703455	A	A	15703455	2	1	11	1	0	0	0	0	0	0	0	1	8247	1190	42	4		4	KIAA0430	16	15703455	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	538418	15703455	74651298	1473	29640											
MYH11	4629	broad.mit.edu	37	chr16	15893863	15893863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgaatggaagggtgggtAgatgggtaggtagatggatg	22	0	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15893863	T	T	15893863	1	4	11	0	1	0	0	0	0	0	0	0	10125	435	15	5		5	MYH11	16	15893863	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	190408	15893863	74460890	1474	29641											
SMG1	23049	broad.mit.edu	37	chr16	18839541	18839541	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcaggaaaaaagcgtttaGataaataagggaagggaggc	14	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18839541	C	C	18839541	1	2	11	0	1	0	0	0	0	0	0	0	14909	957	33	4		4	SMG1	16	18839541	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2945678	18839541	71515212	1475	29642											
TMC7	79905	broad.mit.edu	37	chr16	19070736	19070736	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgtctgtcttgtgttgcAgcctcatcatgttttacttc	7	11	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19070736	T	T	19070736	5	4	11	1	0	0	0	0	0	0	1	0	16113	202	7	5	2084	5	TMC7	16	19070736	Splice_Site	SNP	A	TCGA-05-4398-01A-01D-1265-08	231195	19070736	71284017	1476	29643											
TMC5	79838	broad.mit.edu	37	chr16	19485682	19485682	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaggattatgctttagtAtcaaagttttttctccagag	8	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19485682	T	T	19485682	1	4	11	0	1	0	0	0	0	0	0	0	16111	464	16	5		5	TMC5	16	19485682	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	414946	19485682	70869071	1477	29644											
GPR139	124274	broad.mit.edu	37	chr16	20043477	20043477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccacggagacgaaaattGctcttcctcctgagcttgta	9	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043477	T	T	20043477	3	4	11	1	0	0	0	0	1	0	0	0	6713	1310	46	3	423	3	GPR139	16	20043477	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	557795	20043477	70311276	1478	29645											
DNAH3	55567	broad.mit.edu	37	chr16	21048249	21048249	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acattttcctaaaatgagatGtatcaacaacagagatcttt	5	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21048249	C	C	21048249	1	2	11	0	1	0	0	0	0	0	0	0	4643	1392	48	4		4	DNAH3	16	21048249	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1004772	21048249	69306504	1479	29646											
DNAH3	55567	broad.mit.edu	37	chr16	21053462	21053462	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaagatgaatgtctttaGcttccgaatgatggcttgtt	9	6	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21053462	C	C	21053462	3	2	11	1	0	0	0	0	1	0	0	0	4643	962	34	4	7948	4	DNAH3	16	21053462	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	5213	21053462	69301291	1480	29647											
EARS2	124454	broad.mit.edu	37	chr16	23544097	23544097	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttggttctctgcaaagaaGagaggcccagccactcagct	10	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23544097	A	A	23544097	1	1	11	0	1	0	0	0	0	0	0	0	4918	957	33	4		4	EARS2	16	23544097	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2490635	23544097	66810656	1481	29648											
PLK1	5347	broad.mit.edu	37	chr16	23695312	23695312	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctggctatatccctgcccGtctccccatcacctgcctga	6	18	3	1	rs146806568		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23695312	A	A	23695312	3	1	11	1	0	0	0	0	1	0	0	0	12189	1145	40	4	956	4	PLK1	16	23695312	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	151215	23695312	66659441	1482	29649											
CHP2	63928	broad.mit.edu	37	chr16	23767683	23767683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagggaagacctaccttcCtttccccctcccaccctctc	5	21	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23767683	A	A	23767683	1	1	11	0	1	0	0	0	0	0	0	0	3398	696	24	2		2	CHP2	16	23767683	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	72371	23767683	66587070	1483	29650											
PRKCB	5579	broad.mit.edu	37	chr16	23848547	23848547	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctcccacctacccccacaAaggcggaagactcttgggca	9	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23848547	G	G	23848547	1	3	11	0	1	0	0	0	0	0	0	0	12614	29	1	5		5	PRKCB	16	23848547	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	80864	23848547	66506206	1484	29651											
PRKCB	5579	broad.mit.edu	37	chr16	24196453	24196453	+	Frame_Shift_Del	DEL	G	-	-													taattgcttatcagccctatGggaagtccgtggattggtgg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24196453	-	-	24196453	7	5	11	1	0	1	0	1	0	0	0	0	12614	1348	47	0	1609	0	PRKCB	16	24196453	Frame_Shift_Del	DEL	G	TCGA-05-4398-01A-01D-1265-08	347906	24196453	66158300	1485	29652											
KIAA0556	23247	broad.mit.edu	37	chr16	27786399	27786399	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctggctcccatcctgccGggcctggtgggttcccggca	15	15	0	0	rs146629703		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27786399	T	T	27786399	2	4	11	1	0	0	0	0	0	0	0	1	8253	1103	39	1		1	KIAA0556	16	27786399	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3589946	27786399	62568354	1486	29653											
CLN3	1201	broad.mit.edu	37	chr16	28498850	28498850	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagcacaaatcccactgacGagaacccgggggctgagggg	15	12	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28498850	A	A	28498850	2	1	11	1	0	0	0	0	0	0	0	1	3575	1045	37	4		4	CLN3	16	28498850	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	712451	28498850	61855903	1487	29654											
IL27	246778	broad.mit.edu	37	chr16	28513325	28513325	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgccgctgcagatcgCggaggtccagcctcatggcc	16	13	1	1	rs149151528	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28513325	T	T	28513325	3	4	11	1	0	0	0	0	1	0	0	0	7750	768	27	4	305	4	IL27	16	28513325	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	14475	28513325	61841428	1488	29655											
ATXN2L	11273	broad.mit.edu	37	chr16	28842090	28842090	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagccctggcccaggttctGaggcccgtggtatcaatgga	14	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28842090	T	T	28842090	4	4	11	1	0	0	0	0	0	1	0	0	1216	1291	45	3	1223	3	ATXN2L	16	28842090	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	328765	28842090	61512663	1489	29656											
KIF22	3835	broad.mit.edu	37	chr16	29809685	29809685	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acacgctaatttctttctttCttcctgcaggtttgatgcct	6	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29809685	G	G	29809685	1	3	11	0	1	0	0	0	0	0	0	0	8360	928	32	4		4	KIF22	16	29809685	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	967595	29809685	60545068	1490	29657											
SEZ6L2	26470	broad.mit.edu	37	chr16	29891116	29891117	+	Intron	DNP	CC	AA	AA													cagccttcctttctgaacggCcttgctgggatccccagttc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29891117	AA	AA	29891116	1	1	11	0	1	0	0	0	0	0	0	0	14257	754	26	3		3	SEZ6L2	16	29891116	Intron	DNP	CC	TCGA-05-4398-01A-01D-1265-08	81431	29891116	60463637	1491	29658											
SEPT1	1731	broad.mit.edu	37	chr16	30392730	30392730	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgttcttccggttcaGgccactctcatccctaaggt	9	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30392730	C	C	30392730	3	2	11	1	0	0	0	0	1	0	0	0	14172	991	35	4	761	4	SEPT1	16	30392730	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	501614	30392730	59962023	1492	29659											
ZNF747	65988	broad.mit.edu	37	chr16	30544384	30544384	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttggggagccttcagCccaggagacccggcggccac	17	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30544384	G	G	30544384	3	3	11	1	0	0	0	0	1	0	0	0	18259	739	26	4	7	4	ZNF747	16	30544384	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	151654	30544384	59810369	1493	29660											
ZNF629	23361	broad.mit.edu	37	chr16	30794693	30794693	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcccgcactcggtgcagCggtatggcttctcgcccgcg	12	16	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30794693	T	T	30794693	3	4	11	1	0	0	0	0	1	0	0	0	18180	768	27	4	1657	4	ZNF629	16	30794693	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	250309	30794693	59560060	1494	29661											
STX1B	112755	broad.mit.edu	37	chr16	31004637	31004637	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctcaggcccagggaggctCccagagtggcatgggtggca	16	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31004637	A	A	31004637	1	1	11	0	1	0	0	0	0	0	0	0	15462	870	30	3		3	STX1B	16	31004637	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	209944	31004637	59350116	1495	29662											
ITGAM	3684	broad.mit.edu	37	chr16	31335940	31335940	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttggggagctgaggaGggcagatccccaaatcccgg	17	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31335940	C	C	31335940	1	2	11	0	1	0	0	0	0	0	0	0	7957	1015	35	4		4	ITGAM	16	31335940	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	331303	31335940	59018813	1496	29663											
ITGAM	3684	broad.mit.edu	37	chr16	31336248	31336248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacttggttattttctttcCtttcatttgatcatatttat	3	6	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31336248	A	A	31336248	1	1	11	0	1	0	0	0	0	0	0	0	7957	696	24	2		2	ITGAM	16	31336248	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	308	31336248	59018505	1497	29664											
ITGAX	3687	broad.mit.edu	37	chr16	31371127	31371127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtgagagctgtgataagCcagttccagagacccagcac	11	11	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31371127	A	A	31371127	3	1	11	1	0	0	0	0	1	0	0	0	7959	738	26	3	559	3	ITGAX	16	31371127	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	34879	31371127	58983626	1498	29665											
ITGAX	3687	broad.mit.edu	37	chr16	31374572	31374572	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctctgacagtgctgggGgatgtgaatggggacaagct	18	7	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31374572	T	T	31374572	2	4	11	1	0	0	0	0	0	0	0	1	7959	1219	43	2		2	ITGAX	16	31374572	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3445	31374572	58980181	1499	29666											
ITGAD	3681	broad.mit.edu	37	chr16	31422758	31422758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacgtggccattggggccCcgggagagcaggagaaccgg	18	10	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422758	A	A	31422758	3	1	11	1	0	0	0	0	1	0	0	0	7954	623	22	2	1681	2	ITGAD	16	31422758	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	48186	31422758	58931995	1500	29667											
PHKB	5257	broad.mit.edu	37	chr16	47630502	47630502	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattaagctattagaaataaAtatgcctttgctggtgttta	7	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47630502	G	G	47630502	1	3	11	0	1	0	0	0	0	0	0	0	11940	116	4	5		5	PHKB	16	47630502	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	16207744	47630502	42724251	1501	29668											
ABCC12	94160	broad.mit.edu	37	chr16	48167849	48167849	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcttccagatgggcgctcAtgagtcctgttgtgaagttt	11	10	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48167849	G	G	48167849	1	3	11	0	1	0	0	0	0	0	0	0	52	232	8	5		5	ABCC12	16	48167849	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	537347	48167849	42186904	1502	29669											
NOD2	64127	broad.mit.edu	37	chr16	50744652	50744652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagcccagccaccctggGcctggaggagctcttcagca	13	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50744652	T	T	50744652	3	4	11	1	0	0	0	0	1	0	0	0	10612	1203	42	3	844	3	NOD2	16	50744652	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2576803	50744652	39610101	1503	29670											
CYLD	1540	broad.mit.edu	37	chr16	50811792	50811793	+	Missense_Mutation	DNP	GG	TT	TT													aattattttataccttaaatGggtcttctgttgactcacaa							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50811793	TT	TT	50811792	3	4	11	1	0	0	0	0	1	0	0	0	4176	1348	47	2	1100	2	CYLD	16	50811792	Missense_Mutation	DNP	GG	TCGA-05-4398-01A-01D-1265-08	67140	50811792	39542961	1504	29671											
SALL1	6299	broad.mit.edu	37	chr16	51174165	51174165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaagggttggtgaaggtGgtggcactgcccgcggggcc	18	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51174165	T	T	51174165	2	4	11	1	0	0	0	0	0	0	0	1	13921	1335	47	2		2	SALL1	16	51174165	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	362373	51174165	39180588	1505	29672											
SALL1	6299	broad.mit.edu	37	chr16	51174492	51174492	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagtggtcagagtaggcagGactggtttggtgtctagcca	16	6	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51174492	T	T	51174492	2	4	11	1	0	0	0	0	0	0	0	1	13921	1161	41	3		3	SALL1	16	51174492	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	327	51174492	39180261	1506	29673											
MMP2	4313	broad.mit.edu	37	chr16	55536706	55536706	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacagatacaatgaggtgaaGaagaaaatggatcctggctt	11	5	0	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55536706	T	T	55536706	3	4	11	1	0	0	0	0	1	0	0	0	9751	933	33	3	1838	3	MMP2	16	55536706	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4362214	55536706	34818047	1507	29674											
SLC12A3	6559	broad.mit.edu	37	chr16	56906304	56906304	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcatggtctcctttgcCaactatttagtggggacgct	10	10	3	0	rs78870559		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56906304	A	A	56906304	2	1	11	1	0	0	0	0	0	0	0	1	14497	581	21	2		2	SLC12A3	16	56906304	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1369598	56906304	33448449	1508	29675											
CX3CL1	6376	broad.mit.edu	37	chr16	57413650	57413650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaaccaggcatcatgcGgcaaacgcgcaatcatgtag	10	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57413650	T	T	57413650	3	4	11	1	0	0	0	0	1	0	0	0	4107	1116	39	1	181	1	CX3CL1	16	57413650	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	507346	57413650	32941103	1509	29676											
CTCF	10664	broad.mit.edu	37	chr16	67650625	67650625	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccttgatcttgctcttcCtgttactccatcctttctct	4	15	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67650625	T	T	67650625	1	4	11	0	1	0	0	0	0	0	0	0	4034	696	24	4		4	CTCF	16	67650625	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	10236975	67650625	22704128	1510	29677											
CDH1	999	broad.mit.edu	37	chr16	68835521	68835521	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctttggagaaggaatgcTcttgtctttaatctgtccaa	9	8	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68835521	G	G	68835521	1	3	11	0	1	0	0	0	0	0	0	0	3125	1566	54	5		5	CDH1	16	68835521	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1184896	68835521	21519232	1511	29678											
TMCO7	79613	broad.mit.edu	37	chr16	68901248	68901248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaaactccatccttgcagGgattgaacaggttaaactta	7	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68901248	T	T	68901248	1	4	11	0	1	0	0	0	0	0	0	0	16124	1247	43	2		2	TMCO7	16	68901248	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	65727	68901248	21453505	1512	29679											
HYDIN	54768	broad.mit.edu	37	chr16	71012710	71012710	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacagtgcccttctgcacaCacaccccacacactgtgcac	5	19	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71012710	T	T	71012710	1	4	11	0	1	0	0	0	0	0	0	0	7537	493	17	4		4	HYDIN	16	71012710	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2111462	71012710	19342043	1513	29680											
HYDIN	54768	broad.mit.edu	37	chr16	71061506	71061506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtgctatccccttaccCtgggagtagcagaatagcct	9	11	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71061506	A	A	71061506	3	1	11	1	0	0	0	0	1	0	0	0	7537	695	24	2	12601	2	HYDIN	16	71061506	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	48796	71061506	19293247	1514	29681											
AP1G1	164	broad.mit.edu	37	chr16	71808516	71808516	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaaaaagaaaaaaaaAaagaaggaaattaaaacttg	6	3	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71808516	G	G	71808516	1	3	11	0	1	0	0	0	0	0	0	0	734	29	1	5		5	AP1G1	16	71808516	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	747010	71808516	18546237	1515	29682											
CLEC18B	497190	broad.mit.edu	37	chr16	74447062	74447062	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctcccagttgcctctgtgAggacgagcaggcaccacagg	12	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74447062	T	T	74447062	1	4	11	0	1	0	0	0	0	0	0	0	3535	319	11	5		5	CLEC18B	16	74447062	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2638546	74447062	15907691	1516	29683											
CNTNAP4	85445	broad.mit.edu	37	chr16	76509954	76509954	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccataactgtaagcggaacAcatctgctttttcttgcccc	7	13	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76509954	T	T	76509954	1	4	11	0	1	0	0	0	0	0	0	0	3681	174	6	5		5	CNTNAP4	16	76509954	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	2062892	76509954	13844799	1517	29684											
WWOX	51741	broad.mit.edu	37	chr16	79245433	79245433	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcctgctaatgcccagGcagtcgaaatgacgccatct	12	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79245433	T	T	79245433	1	4	11	0	1	0	0	0	0	0	0	0	17541	1218	42	3		3	WWOX	16	79245433	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2735479	79245433	11109320	1518	29685											
DYNLRB2	83657	broad.mit.edu	37	chr16	80584462	80584462	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atccatgtgaatagacctgcGatggccaaggctgtttaagc	11	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80584462	C	C	80584462	1	2	11	0	1	0	0	0	0	0	0	0	4891	1073	37	4		4	DYNLRB2	16	80584462	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	1339029	80584462	9770291	1519	29686											
PLCG2	5336	broad.mit.edu	37	chr16	81960704	81960704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggtggaaaggagactatgGaaccaggatccagcagtact	13	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81960704	T	T	81960704	3	4	11	1	0	0	0	0	1	0	0	0	12131	1174	41	3	2521	3	PLCG2	16	81960704	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1376242	81960704	8394049	1520	29687											
RPH3AL	9501	broad.mit.edu	37	chr17	69607	69607	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggagggacgagggcaggCctccccagctcattaccacg	14	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69607	T	T	69607	1	4	11	0	1	0	0	0	0	0	0	0	13663	754	26	4		4	RPH3AL	17	69607	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08		69607	81125603	1521	29688											
OR3A1	4994	broad.mit.edu	37	chr17	3195613	3195613	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgcacgcttgcgggacagGagacgactcaacattgatgg	13	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3195613	T	T	3195613	2	4	11	1	0	0	0	0	0	0	0	1	11131	1161	41	3		3	OR3A1	17	3195613	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3126006	3195613	77999597	1522	29689											
ASPA	443	broad.mit.edu	37	chr17	3386869	3386869	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgcgaccactcgttccaTagccaagtatcctgtgggta	9	11	0	0	rs144321760	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3386869	C	C	3386869	3	2	11	1	0	0	0	0	1	0	0	0	1054	1406	49	5	519	5	ASPA	17	3386869	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	191256	3386869	77808341	1523	29690											
P2RX5	5026	broad.mit.edu	37	chr17	3594362	3594362	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaacctcctcctgcccCttagggaccaccccaccttt	7	18	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3594362	A	A	3594362	1	1	11	0	1	0	0	0	0	0	0	0	11437	696	24	2		2	P2RX5	17	3594362	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	207493	3594362	77600848	1524	29691											
P2RX5	5026	broad.mit.edu	37	chr17	3599033	3599033	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggacccccacagcaagcagGctcacagacccccagctacc	8	19	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3599033	C	C	3599033	1	2	11	0	1	0	0	0	0	0	0	0	11437	1218	42	4		4	P2RX5	17	3599033	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4671	3599033	77596177	1525	29692											
C17orf74	201243	broad.mit.edu	37	chr17	7330141	7330141	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggctgagcagtgggcCtcgtctccaccacctcccca	12	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7330141	A	A	7330141	2	1	11	1	0	0	0	0	0	0	0	1	1896	668	24	2		2	C17orf74	17	7330141	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	3731108	7330141	73865069	1526	29693											
TP53	7157	broad.mit.edu	37	chr17	7579373	7579373	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagacggaaaccgtagctgCcctggtaggttttctgggaa	13	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7579373	T	T	7579373	3	4	11	1	0	0	0	0	1	0	0	0	16505	739	26	4	988	4	TP53	17	7579373	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	249232	7579373	73615837	1527	29694											
MYH10	4628	broad.mit.edu	37	chr17	8415964	8415964	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttctgcaaggatattcttCtcttctaaaagctgcaatca	6	9	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8415964	G	G	8415964	3	3	11	1	0	0	0	0	1	0	0	0	10124	912	32	4	3346	4	MYH10	17	8415964	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	836591	8415964	72779246	1528	29695											
GAS7	8522	broad.mit.edu	37	chr17	9828710	9828710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcaaaggagagatgcacCctcgccagtcacctcatctc	8	15	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9828710	A	A	9828710	1	1	11	0	1	0	0	0	0	0	0	0	6312	638	22	2		2	GAS7	17	9828710	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1412746	9828710	71366500	1529	29696											
MYH13	8735	broad.mit.edu	37	chr17	10231126	10231127	+	Intron	DEL	CC	-	-													atggcgccctcaatgttcctCccccttttctgtcctccaga							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10231127	-	-	10231126	6	5	11	0	1	1	0	1	0	0	0	0	10126	870	30	0		0	MYH13	17	10231126	Intron	DEL	CC	TCGA-05-4398-01A-01D-1265-08	402416	10231126	70964084	1530	29697											
MYH13	8735	broad.mit.edu	37	chr17	10258329	10258329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctaaggtaacaaaaataaCgtgatttcaggctcccaaga	7	8	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10258329	A	A	10258329	1	1	11	0	1	0	0	0	0	0	0	0	10126	551	19	3		3	MYH13	17	10258329	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	27203	10258329	70936881	1531	29698											
MYH8	4626	broad.mit.edu	37	chr17	10309716	10309716	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatttaaaaccttgtatcTgctcagttaaagaaagaaag	7	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10309716	A	A	10309716	5	1	11	1	0	0	0	0	0	0	1	0	10135	1594	55	5	3727	5	MYH8	17	10309716	Splice_Site	SNP	T	TCGA-05-4398-01A-01D-1265-08	51387	10309716	70885494	1532	29699											
MYH4	4622	broad.mit.edu	37	chr17	10360870	10360870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgatgttgtagtccacGgtgccggcatagtgcaccag	14	12	0	0	rs145461988	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10360870	T	T	10360870	2	4	11	1	0	0	0	0	0	0	0	1	10131	1103	39	1		1	MYH4	17	10360870	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	51154	10360870	70834340	1533	29700											
MYH4	4622	broad.mit.edu	37	chr17	10363238	10363238	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctaacaagaggatttgcaCtggctaattttctgtcagtt	8	8	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10363238	G	G	10363238	1	3	11	0	1	0	0	0	0	0	0	0	10131	580	20	4		4	MYH4	17	10363238	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2368	10363238	70831972	1534	29701											
MYH1	4619	broad.mit.edu	37	chr17	10399727	10399727	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgtgctctgcatggacTccacgattctaatgtggttt	10	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10399727	A	A	10399727	3	1	11	1	0	0	0	0	1	0	0	0	10123	1551	54	5	1051	5	MYH1	17	10399727	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	36489	10399727	70795483	1535	29702											
MYH2	4620	broad.mit.edu	37	chr17	10424587	10424587	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcagtcattccatggcatCaggacatgatcactcttcac	6	13	6	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10424587	G	G	10424587	1	3	11	0	1	0	0	0	0	0	0	0	10129	841	29	4		4	MYH2	17	10424587	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	24860	10424587	70770623	1536	29703											
MYH2	4620	broad.mit.edu	37	chr17	10440587	10440587	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccccagagaagagctgagcTagagttttcattgcagactt	11	9	1	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10440587	A	A	10440587	2	1	11	1	0	0	0	0	0	0	0	1	10129	1509	53	5		5	MYH2	17	10440587	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	16000	10440587	70754623	1537	29704											
MYH3	4621	broad.mit.edu	37	chr17	10555781	10555781	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccttcaggttgtacagcaCggctggctcattcaggtgcg	13	11	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10555781	T	T	10555781	3	4	11	1	0	0	0	0	1	0	0	0	10130	536	19	4	5670	4	MYH3	17	10555781	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	115194	10555781	70639429	1538	29705											
DNAH9	1770	broad.mit.edu	37	chr17	11522936	11522937	+	Missense_Mutation	DNP	GG	TT	TT													agtcagagaaaactgcaagtGgtctcagacactttgagctt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	11522937	TT	TT	11522936	3	4	11	1	0	0	0	0	1	0	0	0	4648	1335	47	2	1210	2	DNAH9	17	11522936	Missense_Mutation	DNP	GG	TCGA-05-4398-01A-01D-1265-08	967155	11522936	69672274	1539	29706											
DNAH9	1770	broad.mit.edu	37	chr17	11532817	11532817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaatgctctgagtcagcaGgtccagcaaatgcatgaaga	13	8	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11532817	T	T	11532817	3	4	11	1	0	0	0	0	1	0	0	0	4648	991	35	2	1460	2	DNAH9	17	11532817	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	9881	11532817	69662393	1540	29707											
DNAH9	1770	broad.mit.edu	37	chr17	11651011	11651011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccccgtctggactgacCtcaatcccaaagcagtcaca	9	16	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11651011	A	A	11651011	3	1	11	1	0	0	0	0	1	0	0	0	4648	681	24	2	6664	2	DNAH9	17	11651011	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	118194	11651011	69544199	1541	29708											
MYOCD	93649	broad.mit.edu	37	chr17	12642536	12642536	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggatcttgcttctggctCagaaaatgacagaaatgact	9	8	4	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12642536	T	T	12642536	3	4	11	1	0	0	0	0	1	0	0	0	10181	838	29	4	634	4	MYOCD	17	12642536	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	991525	12642536	68552674	1542	29709											
RICH2	9912	broad.mit.edu	37	chr17	12859164	12859164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagccttggttaaacctggCccttctaattttcttttaga	7	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12859164	T	T	12859164	1	4	11	0	1	0	0	0	0	0	0	0	13466	754	26	4		4	RICH2	17	12859164	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	216628	12859164	68336046	1543	29710											
HS3ST3A1	9955	broad.mit.edu	37	chr17	13503879	13503879	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggcccttgtcgtagctgcGgtcgaagaagtggggctcgg	18	9	0	1	rs78372491		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13503879	C	C	13503879	3	2	11	1	0	0	0	0	1	0	0	0	7432	1116	39	4	660	4	HS3ST3A1	17	13503879	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	644715	13503879	67691331	1544	29711											
CDRT15	146822	broad.mit.edu	37	chr17	14139564	14139564	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctctccagccacgctttcaGttccagggttagggctagtg	11	12	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14139564	C	C	14139564	1	2	11	0	1	0	0	0	0	0	0	0	3205	1044	36	4		4	CDRT15	17	14139564	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	635685	14139564	67055646	1545	29712											
ZSWIM7	125150	broad.mit.edu	37	chr17	15881310	15881310	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcatgacgctttcaatgCatttcttgacaggattctat	7	8	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15881310	T	T	15881310	1	4	11	0	1	0	0	0	0	0	0	0	18374	725	25	4		4	ZSWIM7	17	15881310	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1741746	15881310	65313900	1546	29713											
CCDC144A	9720	broad.mit.edu	37	chr17	16594080	16594080	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatggccaggcgaaggatgCgccgtcctgtcggggacact	15	11	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16594080	G	G	16594080	1	3	11	0	1	0	0	0	0	0	0	0	2803	783	27	4		4	CCDC144A	17	16594080	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	712770	16594080	64601130	1547	29714											
PEMT	10400	broad.mit.edu	37	chr17	17412723	17412723	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaggtggccagcagggcaGaggggtggcaagcctggtac	21	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17412723	A	A	17412723	1	1	11	0	1	0	0	0	0	0	0	0	11820	957	33	4		4	PEMT	17	17412723	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	818643	17412723	63782487	1548	29715											
AKAP10	11216	broad.mit.edu	37	chr17	19866107	19866107	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagtttcacatattgtaCtcaaatccttctaatacaag	4	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19866107	T	T	19866107	1	4	11	0	1	0	0	0	0	0	0	0	446	580	20	4		4	AKAP10	17	19866107	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2453384	19866107	61329103	1549	29716											
NOS2	4843	broad.mit.edu	37	chr17	26108258	26108258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctggtgggggcccagcCatcctgcactggccctacct	12	17	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26108258	A	A	26108258	1	1	11	0	1	0	0	0	0	0	0	0	10638	609	21	2		2	NOS2	17	26108258	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6242151	26108258	55086952	1550	29717											
SLC13A2	9058	broad.mit.edu	37	chr17	26817894	26817894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccttcgagctccaggaaCcaagtccccagaaggaggtg	11	14	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26817894	A	A	26817894	3	1	11	1	0	0	0	0	1	0	0	0	14505	507	18	3	705	3	SLC13A2	17	26817894	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	709636	26817894	54377316	1551	29718											
MYO18A	399687	broad.mit.edu	37	chr17	27401235	27401235	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattcccgagtcgttcttggGagccccagctaccactacag	9	15	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27401235	A	A	27401235	1	1	11	0	1	0	0	0	0	0	0	0	10159	1189	41	4		4	MYO18A	17	27401235	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	583341	27401235	53793975	1552	29719											
MYO18A	399687	broad.mit.edu	37	chr17	27493336	27493336	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcaggggcaccacggggGgcaggcgcaggtcgactggg	23	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27493336	A	A	27493336	3	1	11	1	0	0	0	0	1	0	0	0	10159	1232	43	4	5705	4	MYO18A	17	27493336	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	92101	27493336	53701874	1553	29720											
TMIGD1	388364	broad.mit.edu	37	chr17	28656342	28656342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtaaagctgattccgttGtcattttcactgatggaaga	10	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28656342	C	C	28656342	3	2	11	1	0	0	0	0	1	0	0	0	16353	1368	48	4	520	4	TMIGD1	17	28656342	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1163006	28656342	52538868	1554	29721											
MYO1D	4642	broad.mit.edu	37	chr17	31094607	31094607	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatcttctgagaaagcatcCtgttctcagcagaagacaat	7	9	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31094607	G	G	31094607	1	3	11	0	1	0	0	0	0	0	0	0	10165	696	24	4		4	MYO1D	17	31094607	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2438265	31094607	50100603	1555	29722											
TMEM132E	124842	broad.mit.edu	37	chr17	32964723	32964723	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgctgggcgtcttctgCctcgccatcctcgtcttcct	10	17	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32964723	A	A	32964723	4	1	11	1	0	0	0	0	0	1	0	0	16171	747	26	3	2465	3	TMEM132E	17	32964723	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1870116	32964723	48230487	1556	29723											
UNC45B	146862	broad.mit.edu	37	chr17	33496792	33496792	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaaacctgtttgagcaagGcttcatccccaagccttggt	9	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33496792	A	A	33496792	1	1	11	0	1	0	0	0	0	0	0	0	17115	1218	42	4		4	UNC45B	17	33496792	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	532069	33496792	47698418	1557	29724											
AMAC1	146861	broad.mit.edu	37	chr17	33520879	33520879	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccactgagaccctggctctCaaggcagagagtgaggacgg	15	11	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33520879	A	A	33520879	4	1	11	1	0	0	0	0	0	1	0	0	559	835	29	3	572	3	AMAC1	17	33520879	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	24087	33520879	47674331	1558	29725											
TBC1D3C	414060	broad.mit.edu	37	chr17	34611297	34611297	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagtcagctatgaaattcTgtggaatctgccgggaggtg	14	6	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34611297	G	G	34611297	1	3	11	0	1	0	0	0	0	0	0	0	15741	1595	55	5		5	TBC1D3C	17	34611297	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1090418	34611297	46583913	1559	29726											
MYO19	80179	broad.mit.edu	37	chr17	34862490	34862490	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgagggcaggtggagcTtctgctcagggccatccact	15	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34862490	G	G	34862490	1	3	11	0	1	0	0	0	0	0	0	0	10161	1624	56	5		5	MYO19	17	34862490	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	251193	34862490	46332720	1560	29727											
ACACA	31	broad.mit.edu	37	chr17	35501283	35501283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctctcgcttgccccggCgctgtctctatcgtaacctc	9	17	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35501283	A	A	35501283	1	1	11	0	1	0	0	0	0	0	0	0	106	783	27	3		3	ACACA	17	35501283	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	638793	35501283	45693927	1561	29728											
TBC1D3	729873	broad.mit.edu	37	chr17	36365184	36365184	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggttcccgtacctgtgatTgaagataaataaaaaacact	7	7	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36365184	G	G	36365184	1	3	11	0	1	0	0	0	0	0	0	0	15739	1827	63	5		5	TBC1D3	17	36365184	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	863901	36365184	44830026	1562	29729											
C17orf98	388381	broad.mit.edu	37	chr17	36993570	36993570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacagtgcaaactgccctGgggtttgctgtggggatagg	16	8	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36993570	T	T	36993570	1	4	11	0	1	0	0	0	0	0	0	0	1911	1363	47	2		2	C17orf98	17	36993570	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	628386	36993570	44201640	1563	29730											
MED1	5469	broad.mit.edu	37	chr17	37576205	37576205	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagttaacgagtgctatttAgttacctattgtattccaac	6	8	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37576205	C	C	37576205	1	2	11	0	1	0	0	0	0	0	0	0	9518	435	15	5		5	MED1	17	37576205	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	582635	37576205	43619005	1564	29731											
GRB7	2886	broad.mit.edu	37	chr17	37903227	37903227	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccatccagtggactctgGggcgcggccacaggggacgg	16	14	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37903227	T	T	37903227	1	4	11	0	1	0	0	0	0	0	0	0	6825	1247	43	2		2	GRB7	17	37903227	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	327022	37903227	43291983	1565	29732											
MED24	9862	broad.mit.edu	37	chr17	38187709	38187709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaaggagacagagtcccCtgaggcttctctggcacaga	12	11	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38187709	A	A	38187709	1	1	11	0	1	0	0	0	0	0	0	0	9535	696	24	2		2	MED24	17	38187709	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	284482	38187709	43007501	1566	29733											
NR1D1	9572	broad.mit.edu	37	chr17	38252783	38252783	+	Frame_Shift_Del	DEL	C	-	-													gcggacgatggagcaattctCattcttcagacaccttttgt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38252783	-	-	38252783	7	5	11	1	0	1	0	1	0	0	0	0	10710	835	29	0	1347	0	NR1D1	17	38252783	Frame_Shift_Del	DEL	C	TCGA-05-4398-01A-01D-1265-08	65074	38252783	42942427	1567	29734											
KRT25	147183	broad.mit.edu	37	chr17	38910148	38910148	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaggtaagtcatctcctcActcagggtttcatactgaat	8	9	5	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38910148	T	T	38910148	3	4	11	1	0	0	0	0	1	0	0	0	8533	156	6	5	743	5	KRT25	17	38910148	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	657365	38910148	42285062	1568	29735											
KRT28	162605	broad.mit.edu	37	chr17	38953178	38953178	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacctaccgtggccatcAgggactgcagctggatctcc	11	14	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38953178	G	G	38953178	3	3	11	1	0	0	0	0	1	0	0	0	8536	188	7	5	442	5	KRT28	17	38953178	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	43030	38953178	42242032	1569	29736											
KRT39	390792	broad.mit.edu	37	chr17	39118699	39118699	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttgcggtttgtctccatGatgggctcatattgacatct	9	9	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39118699	T	T	39118699	2	4	11	1	0	0	0	0	0	0	0	1	8547	1280	45	3		3	KRT39	17	39118699	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	165521	39118699	42076511	1570	29737											
KRTAP4-2	85291	broad.mit.edu	37	chr17	39334263	39334263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggcagcacacagactGgcagcactgcggtctgcagc	15	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39334263	T	T	39334263	3	4	11	1	0	0	0	0	1	0	0	0	8623	1357	47	2	260	2	KRTAP4-2	17	39334263	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	215564	39334263	41860947	1571	29738											
KRTAP4-1	85285	broad.mit.edu	37	chr17	39346669	39346670	+	Intron	DNP	CC	TT	TT													atttgtagatccacctgctgCcaaccatcctgtgtgaccag							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39346670	TT	TT	39346669	1	4	11	0	1	0	0	0	0	0	0	0	8620	754	26	4		4	KRTAP4-1	17	39346669	Intron	DNP	CC	TCGA-05-4398-01A-01D-1265-08	12406	39346669	41848541	1572	29739											
CNTD1	124817	broad.mit.edu	37	chr17	40950804	40950804	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtccgcgtgccctttgCggggcagagccgcggttccc	15	14	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40950804	A	A	40950804	1	1	11	0	1	0	0	0	0	0	0	0	3667	783	27	3		3	CNTD1	17	40950804	5'Flank	SNP	C	TCGA-05-4398-01A-01D-1265-08	1604135	40950804	40244406	1573	29740											
CNTD1	124817	broad.mit.edu	37	chr17	40959840	40959840	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttggcagtaggaatcatTgcagcaagtgctttcatcca	10	9	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40959840	A	A	40959840	2	1	11	1	0	0	0	0	0	0	0	1	3667	1800	63	5		5	CNTD1	17	40959840	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	9036	40959840	40235370	1574	29741											
TMEM106A	113277	broad.mit.edu	37	chr17	41369229	41369229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcttctgagctgacagGctgctccatgtgacacgtgg	13	11	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41369229	T	T	41369229	1	4	11	0	1	0	0	0	0	0	0	0	16143	1218	42	3		3	TMEM106A	17	41369229	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	409389	41369229	39825981	1575	29742											
ATXN7L3	56970	broad.mit.edu	37	chr17	42274518	42274518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccaagtaaaacccaccCtctgtaccttcccaatgccc	7	17	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42274518	A	A	42274518	1	1	11	0	1	0	0	0	0	0	0	0	1222	696	24	2		2	ATXN7L3	17	42274518	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	905289	42274518	38920692	1576	29743											
SLC4A1	6521	broad.mit.edu	37	chr17	42335196	42335196	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggtagaggtcacagtGggatcaaggtcaggagatca	16	6	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42335196	A	A	42335196	1	1	11	0	1	0	0	0	0	0	0	0	14764	1363	47	4		4	SLC4A1	17	42335196	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	60678	42335196	38860014	1577	29744											
GPATCH8	23131	broad.mit.edu	37	chr17	42477130	42477130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagctgctaccacccccaCcttcatcctttttgccactg	7	17	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42477130	A	A	42477130	3	1	11	1	0	0	0	0	1	0	0	0	6659	507	18	3	2197	3	GPATCH8	17	42477130	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	141934	42477130	38718080	1578	29745											
DBF4B	80174	broad.mit.edu	37	chr17	42818803	42818803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccccgacgaccctgggCagcatgcaccataccaggtg	13	15	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42818803	A	A	42818803	2	1	11	1	0	0	0	0	0	0	0	1	4282	697	25	3		3	DBF4B	17	42818803	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	341673	42818803	38376407	1579	29746											
SKAP1	8631	broad.mit.edu	37	chr17	46233746	46233746	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcgtgggaagtaatttaCgagtcgcaggctctcaggag	14	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46233746	T	T	46233746	1	4	11	0	1	0	0	0	0	0	0	0	14468	551	19	4		4	SKAP1	17	46233746	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3414943	46233746	34961464	1580	29747											
HOXB6	3216	broad.mit.edu	37	chr17	46673903	46673903	+	Frame_Shift_Del	DEL	G	-	-													ctgcctctccgtcaggcacaGggcgtgcgcgatctcgatgc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46673903	-	-	46673903	7	5	11	1	0	1	0	1	0	0	0	0	7372	991	35	0	131	0	HOXB6	17	46673903	Frame_Shift_Del	DEL	G	TCGA-05-4398-01A-01D-1265-08	440157	46673903	34521307	1581	29748											
ZNF652	22834	broad.mit.edu	37	chr17	47376242	47376242	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcttcatgttggggcggcTggtgaagcttttgccacaga	13	9	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47376242	A	A	47376242	3	1	11	1	0	0	0	0	1	0	0	0	18192	1580	55	5	470	5	ZNF652	17	47376242	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	702339	47376242	33818968	1582	29749											
PHB	5245	broad.mit.edu	37	chr17	47489238	47489238	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacatgtcataaaaatccTctcatcctttaaacaaaagg	4	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47489238	A	A	47489238	1	1	11	0	1	0	0	0	0	0	0	0	11909	1566	54	5		5	PHB	17	47489238	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	112996	47489238	33705972	1583	29750											
PPP1R9B	84687	broad.mit.edu	37	chr17	48221106	48221106	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggaacagagagtggtgagAtggcagggcttgtaggggac	20	4	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48221106	C	C	48221106	1	2	11	0	1	0	0	0	0	0	0	0	12480	348	12	5		5	PPP1R9B	17	48221106	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	731868	48221106	32974104	1584	29751											
COL1A1	1277	broad.mit.edu	37	chr17	48272060	48272060	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgagggtggagcgggaGggggcgggcagggacactta	22	6	0	1	rs76121182		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48272060	A	A	48272060	1	1	11	0	1	0	0	0	0	0	0	0	3709	1015	35	4		4	COL1A1	17	48272060	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	50954	48272060	32923150	1585	29752											
CACNA1G	8913	broad.mit.edu	37	chr17	48649379	48649379	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcggaaccgatgcttcCtacctgagaatttcagcctg	9	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48649379	T	T	48649379	2	4	11	1	0	0	0	0	0	0	0	1	2570	680	24	4		4	CACNA1G	17	48649379	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	377319	48649379	32545831	1586	29753											
CACNA1G	8913	broad.mit.edu	37	chr17	48649536	48649536	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggttctcaaacttggctacCcattggaaccacctggggag	11	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48649536	G	G	48649536	1	3	11	0	1	0	0	0	0	0	0	0	2570	638	22	4		4	CACNA1G	17	48649536	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	157	48649536	32545674	1587	29754											
CACNA1G	8913	broad.mit.edu	37	chr17	48678635	48678635	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttgctgacctgcaagtcaCacagcagggaacgagggggc	15	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48678635	T	T	48678635	1	4	11	0	1	0	0	0	0	0	0	0	2570	493	17	4		4	CACNA1G	17	48678635	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	29099	48678635	32516575	1588	29755											
ABCC3	8714	broad.mit.edu	37	chr17	48745768	48745768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaagtacagtctctagGgctgactcacatcctcccgt	10	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48745768	T	T	48745768	1	4	11	0	1	0	0	0	0	0	0	0	54	1247	43	2		2	ABCC3	17	48745768	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	67133	48745768	32449442	1589	29756											
CA10	56934	broad.mit.edu	37	chr17	49824903	49824904	+	Intron	DNP	CC	AT	AT													ttcatagattagagcgaatcCctttgttatgttatcccatc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	49824904	AT	AT	49824903	1	1	11	0	1	0	0	0	0	0	0	0	2537	638	22	2		2	CA10	17	49824903	Intron	DNP	CC	TCGA-05-4398-01A-01D-1265-08	1079135	49824903	31370307	1590	29757											
KIF2B	84643	broad.mit.edu	37	chr17	51900791	51900791	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggggacagcctggatGtgagggtccccagcaaacct	13	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51900791	A	A	51900791	3	1	11	1	0	0	0	0	1	0	0	0	8368	1377	48	4	399	4	KIF2B	17	51900791	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2075888	51900791	29294419	1591	29758											
KIF2B	84643	broad.mit.edu	37	chr17	51902231	51902231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggataccacaatttcaGggaagggatctagccaatgg	13	7	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51902231	T	T	51902231	3	4	11	1	0	0	0	0	1	0	0	0	8368	1000	35	2	1839	2	KIF2B	17	51902231	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1440	51902231	29292979	1592	29759											
MSI2	124540	broad.mit.edu	37	chr17	55709162	55709162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttgcagactatttgccGgtttcacaagacataatttt	6	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55709162	T	T	55709162	1	4	11	0	1	0	0	0	0	0	0	0	9970	1103	39	1		1	MSI2	17	55709162	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3806931	55709162	25486048	1593	29760											
MKS1	54903	broad.mit.edu	37	chr17	56290356	56290356	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcttacatccttgaacactCgccgttcccgctcctcctcc	5	20	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56290356	G	G	56290356	3	3	11	1	0	0	0	0	1	0	0	0	9702	884	31	4	878	4	MKS1	17	56290356	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	581194	56290356	24904854	1594	29761											
SEPT4	5414	broad.mit.edu	37	chr17	56604506	56604506	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagaggaagtgctcaccatCcctccctcacctgctcacaa	6	17	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56604506	A	A	56604506	1	1	11	0	1	0	0	0	0	0	0	0	14179	870	30	3		3	SEPT4	17	56604506	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	314150	56604506	24590704	1595	29762											
SKA2	348235	broad.mit.edu	37	chr17	57208721	57208721	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatccagatcagactcagctTtctggaactaaagatcagca	7	10	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57208721	A	A	57208721	3	1	11	1	0	0	0	0	1	0	0	0	14466	1850	64	5	336	5	SKA2	17	57208721	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	604215	57208721	23986489	1596	29763											
CLTC	1213	broad.mit.edu	37	chr17	57728627	57728627	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctttccaaagaaggcagtgGatgtcttctttcctccagaa	8	11	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57728627	A	A	57728627	3	1	11	1	0	0	0	0	1	0	0	0	3598	1174	41	4	763	4	CLTC	17	57728627	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	519906	57728627	23466583	1597	29764											
HEATR6	63897	broad.mit.edu	37	chr17	58120873	58120873	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagatcttatgctcaagCtcaggtcttcctactgccgc	7	15	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58120873	A	A	58120873	1	1	11	0	1	0	0	0	0	0	0	0	7100	812	28	3		3	HEATR6	17	58120873	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	392246	58120873	23074337	1598	29765											
AXIN2	8313	broad.mit.edu	37	chr17	63526224	63526224	+	Intron	DEL	A	-	-													cttttttgaagtaataccttAaaaggaaaaccaaaaaagct							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63526224	-	-	63526224	6	5	11	0	1	1	0	1	0	0	0	0	1242	377	13	0		0	AXIN2	17	63526224	Intron	DEL	A	TCGA-05-4398-01A-01D-1265-08	5405351	63526224	17668986	1599	29766											
PSMD12	5718	broad.mit.edu	37	chr17	65340847	65340847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccatagtcctcaacaaGtgtggaccaacgcatcaact	6	13	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65340847	T	T	65340847	3	4	11	1	0	0	0	0	1	0	0	0	12801	1029	36	3	424	3	PSMD12	17	65340847	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1814623	65340847	15854363	1600	29767											
NOL11	25926	broad.mit.edu	37	chr17	65731993	65731993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaaaaaatttgcttatGtttttgataactttttttgt	6	2	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65731993	T	T	65731993	1	4	11	0	1	0	0	0	0	0	0	0	10616	1392	48	3		3	NOL11	17	65731993	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	391146	65731993	15463217	1601	29768											
ABCA8	10351	broad.mit.edu	37	chr17	66873755	66873755	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggttgggccacagcgcGttctcctgagggcagtaccc	14	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66873755	A	A	66873755	2	1	11	1	0	0	0	0	0	0	0	1	38	1136	40	4		4	ABCA8	17	66873755	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1141762	66873755	14321455	1602	29769											
ABCA6	23460	broad.mit.edu	37	chr17	67111003	67111003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaacattgaattgaggaCagacgccagttatctttctg	9	7	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67111003	A	A	67111003	3	1	11	1	0	0	0	0	1	0	0	0	36	478	17	3	3279	3	ABCA6	17	67111003	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	237248	67111003	14084207	1603	29770											
KIF19	124602	broad.mit.edu	37	chr17	72348399	72348399	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgcctggaagagctctacGaagtgtacctgcgggagctg	15	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72348399	T	T	72348399	4	4	11	1	0	0	0	0	0	1	0	0	8352	1059	37	3	1954	3	KIF19	17	72348399	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	5237396	72348399	8846811	1604	29771											
TMEM104	54868	broad.mit.edu	37	chr17	72786483	72786483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccctccgggccacagGgttccctttcttcatggaga	9	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72786483	T	T	72786483	1	4	11	0	1	0	0	0	0	0	0	0	16141	1247	43	2		2	TMEM104	17	72786483	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	438084	72786483	8408727	1605	29772											
OTOP2	92736	broad.mit.edu	37	chr17	72920736	72920736	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcctccgccatgtccgaGgagctggcccagggccccaa	13	17	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72920736	C	C	72920736	3	2	11	1	0	0	0	0	1	0	0	0	11400	991	35	4	11	4	OTOP2	17	72920736	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	134253	72920736	8274474	1606	29773											
CASKIN2	57513	broad.mit.edu	37	chr17	73503731	73503731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctatgagctccaggctgcCccccaaagcagcgtggtgga	14	13	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73503731	A	A	73503731	3	1	11	1	0	0	0	0	1	0	0	0	2693	623	22	2	3498	2	CASKIN2	17	73503731	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	582995	73503731	7691479	1607	29774											
QRICH2	84074	broad.mit.edu	37	chr17	74288578	74288578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accacgctgatgatctgcacGaggttgtgccaaaccacgct	10	13	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74288578	A	A	74288578	3	1	11	1	0	0	0	0	1	0	0	0	12988	1058	37	4	3323	4	QRICH2	17	74288578	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	784847	74288578	6906632	1608	29775											
SPHK1	8877	broad.mit.edu	37	chr17	74382929	74382929	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctcctgaccaactgcacGctattgctgtgccgccggct	10	16	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74382929	A	A	74382929	2	1	11	1	0	0	0	0	0	0	0	1	15164	1074	38	4		4	SPHK1	17	74382929	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	94351	74382929	6812281	1609	29776											
RHBDF2	79651	broad.mit.edu	37	chr17	74473340	74473340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtagctggcagagagtgggGgggactcaaagacatcatca	15	7	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74473340	A	A	74473340	3	1	11	1	0	0	0	0	1	0	0	0	13429	1232	43	4	1689	4	RHBDF2	17	74473340	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	90411	74473340	6721870	1610	29777											
SEC14L1	6397	broad.mit.edu	37	chr17	75212739	75212739	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatcccctgccccctccCaggctgaagatctgttcttt	7	17	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75212739	A	A	75212739	1	1	11	0	1	0	0	0	0	0	0	0	14094	609	21	2		2	SEC14L1	17	75212739	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	739399	75212739	5982471	1611	29778											
ENPP7	339221	broad.mit.edu	37	chr17	77705138	77705138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgaccagcccctgccaCttcaccctggtcaccggtga	8	18	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77705138	A	A	77705138	3	1	11	1	0	0	0	0	1	0	0	0	5177	564	20	3	239	3	ENPP7	17	77705138	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2492399	77705138	3490072	1612	29779											
RNF213	57674	broad.mit.edu	37	chr17	78331231	78331231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatccacctgtctatcagaCactcagatctagtgtacaaa	5	13	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78331231	A	A	78331231	1	1	11	0	1	0	0	0	0	0	0	0	13588	493	17	3		3	RNF213	17	78331231	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	626093	78331231	2863979	1613	29780											
AZI1	22994	broad.mit.edu	37	chr17	79163449	79163449	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccacaggtgcttagccgTgggcatctcaaccaccagcc	10	16	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79163449	A	A	79163449	1	1	11	0	1	0	0	0	0	0	0	0	1245	1711	59	5		5	AZI1	17	79163449	3'UTR	SNP	T	TCGA-05-4398-01A-01D-1265-08	832218	79163449	2031761	1614	29781											
LAMA1	284217	broad.mit.edu	37	chr18	6975928	6975928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcgctttccaaaggtccaTaacttacagcggtgctgcta	9	11	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6975928	A	A	6975928	1	1	11	0	1	0	0	0	0	0	0	0	8677	1421	49	5		5	LAMA1	18	6975928	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08		6975928	71101320	1615	29782											
MC2R	4158	broad.mit.edu	37	chr18	13885377	13885377	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttattcttgaacacagcCagcaggacgatcagattctc	7	11	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13885377	T	T	13885377	2	4	11	1	0	0	0	0	0	0	0	1	9457	581	21	4		4	MC2R	18	13885377	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	6909449	13885377	64191871	1616	29783											
POTEC	388468	broad.mit.edu	37	chr18	14537826	14537826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgattcaatatcagcacCatataagagcagtgctttgg	8	7	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14537826	A	A	14537826	3	1	11	1	0	0	0	0	1	0	0	0	12358	594	21	2	880	2	POTEC	18	14537826	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	652449	14537826	63539422	1617	29784											
ANKRD30B	374860	broad.mit.edu	37	chr18	14799120	14799120	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtctcctgataatgatggtCttctgaaggtaataactttt	8	6	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14799120	A	A	14799120	3	1	11	1	0	0	0	0	1	0	0	0	659	913	32	3	2132	3	ANKRD30B	18	14799120	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	261294	14799120	63278128	1618	29785											
LAMA3	3909	broad.mit.edu	37	chr18	21513790	21513790	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatttgaccagtaactctcTcaagagagatgtgtccctgg	10	9	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21513790	G	G	21513790	3	3	11	1	0	0	0	0	1	0	0	0	8679	1551	54	5	9194	5	LAMA3	18	21513790	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	6714670	21513790	56563458	1619	29786											
ZNF521	25925	broad.mit.edu	37	chr18	22775074	22775074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttaatggtgatataCacaagcagaagaaacatcta	7	7	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22775074	A	A	22775074	1	1	11	0	1	0	0	0	0	0	0	0	18092	493	17	3		3	ZNF521	18	22775074	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1261284	22775074	55302174	1620	29787											
KIAA1012	22878	broad.mit.edu	37	chr18	29454784	29454784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcttcctctaagggggaCtgggataatgaagaaaataa	12	5	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29454784	A	A	29454784	1	1	11	0	1	0	0	0	0	0	0	0	8274	580	20	3		3	KIAA1012	18	29454784	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6679710	29454784	48622464	1621	29788											
RNF138	51444	broad.mit.edu	37	chr18	29709131	29709131	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaactgctgttgaagaatCttttcaagtaaacatctgaa	6	8	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29709131	G	G	29709131	3	3	11	1	0	0	0	0	1	0	0	0	13552	913	32	4	745	4	RNF138	18	29709131	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	254347	29709131	48368117	1622	29789											
ASXL3	80816	broad.mit.edu	37	chr18	31324221	31324221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccataaaccgatcaattcCgtgtaaagtcatcgttgacc	7	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324221	A	A	31324221	3	1	11	1	0	0	0	0	1	0	0	0	1072	652	23	1	4455	1	ASXL3	18	31324221	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1615090	31324221	46753027	1623	29790											
SLC39A6	25800	broad.mit.edu	37	chr18	33706788	33706788	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttattttctccatagcggtaGaaaagctgttgtagatgata	9	5	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33706788	A	A	33706788	2	1	11	1	0	0	0	0	0	0	0	1	14736	933	33	4		4	SLC39A6	18	33706788	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2382567	33706788	44370460	1624	29791											
SETBP1	26040	broad.mit.edu	37	chr18	42618459	42618459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttttagggatgccaaGtccccacttaaaagtggacc	8	9	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42618459	T	T	42618459	3	4	11	1	0	0	0	0	1	0	0	0	14242	1029	36	3	4217	3	SETBP1	18	42618459	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	8911671	42618459	35458789	1625	29792											
SLC14A2	8170	broad.mit.edu	37	chr18	43248289	43248289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggggaagcccctgctcCacctgaccctccctctcctg	8	21	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43248289	A	A	43248289	1	1	11	0	1	0	0	0	0	0	0	0	14510	609	21	2		2	SLC14A2	18	43248289	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	629830	43248289	34828959	1626	29793											
SLC14A1	6563	broad.mit.edu	37	chr18	43314340	43314340	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatttctggtggctgttacTccctgtatgtgctatgtcca	9	10	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43314340	C	C	43314340	3	2	11	1	0	0	0	0	1	0	0	0	14509	1551	54	5	625	5	SLC14A1	18	43314340	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	66051	43314340	34762908	1627	29794											
TCF4	6925	broad.mit.edu	37	chr18	52943067	52943067	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttcatatacttgaaaatGactgcctgttgtgttattca	6	6	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52943067	A	A	52943067	1	1	11	0	1	0	0	0	0	0	0	0	15817	1305	45	4		4	TCF4	18	52943067	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	9628727	52943067	25134181	1628	29795											
SERPINB13	5275	broad.mit.edu	37	chr18	61264336	61264336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctggctgccatggggatGggcgatgccttcagtgagca	16	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61264336	T	T	61264336	3	4	11	1	0	0	0	0	1	0	0	0	14213	1348	47	2	941	2	SERPINB13	18	61264336	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	8321269	61264336	16812912	1629	29796											
SERPINB3	6317	broad.mit.edu	37	chr18	61323236	61323236	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaatcgacacgtgtctcTctcatattctgcaaacttgt	6	10	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61323236	A	A	61323236	3	1	11	1	0	0	0	0	1	0	0	0	14215	1548	54	5	348	5	SERPINB3	18	61323236	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	58900	61323236	16754012	1630	29797											
SERPINB11	89778	broad.mit.edu	37	chr18	61390485	61390485	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtcagcgaagagggcaCggaggcagcagcagccactg	17	10	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61390485	G	G	61390485	3	3	11	1	0	0	0	0	1	0	0	0	14211	536	19	4	1057	4	SERPINB11	18	61390485	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	67249	61390485	16686763	1631	29798											
SERPINB2	5055	broad.mit.edu	37	chr18	61570585	61570585	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttttgtagatgagctgtGtgcctcagaattgctatttc	10	6	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61570585	A	A	61570585	1	1	11	0	1	0	0	0	0	0	0	0	14214	1392	48	4		4	SERPINB2	18	61570585	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	180100	61570585	16506663	1632	29799											
CDH19	28513	broad.mit.edu	37	chr18	64178899	64178899	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatggattcatctctatcCactgcactgatagtctgaat	6	10	4	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64178899	A	A	64178899	2	1	11	1	0	0	0	0	0	0	0	1	3134	581	21	2		2	CDH19	18	64178899	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2608314	64178899	13898349	1633	29800											
DOK6	220164	broad.mit.edu	37	chr18	67266800	67266800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagacaatggcccaggcGgattaaggtacactattgaa	12	7	0	2	rs111341291	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67266800	T	T	67266800	1	4	11	0	1	0	0	0	0	0	0	0	4741	1131	39	1		1	DOK6	18	67266800	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3087901	67266800	10810448	1634	29801											
RTTN	25914	broad.mit.edu	37	chr18	67718785	67718785	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctgatattaactctttatCtataaaattaatcaaaacac	2	7	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67718785	A	A	67718785	5	1	11	1	0	0	0	0	0	0	1	0	13848	927	32	3	1539	3	RTTN	18	67718785	Splice_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	451985	67718785	10358463	1635	29802											
NETO1	81832	broad.mit.edu	37	chr18	70416195	70416195	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaactacaagacagttGcaacaaaacagaatacgaca	5	8	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70416195	A	A	70416195	1	1	11	0	1	0	0	0	0	0	0	0	10434	1334	46	4		4	NETO1	18	70416195	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2697410	70416195	7661053	1636	29803											
NETO1	81832	broad.mit.edu	37	chr18	70451078	70451078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcttccatcatacacagCcacaaaattcctcttgcact	3	15	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70451078	A	A	70451078	3	1	11	1	0	0	0	0	1	0	0	0	10434	739	26	3	914	3	NETO1	18	70451078	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	34883	70451078	7626170	1637	29804											
ZNF407	55628	broad.mit.edu	37	chr18	72353080	72353080	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagtgtcatgtctgtgggTgagtaaattgaagccatctc	11	7	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72353080	C	C	72353080	5	2	11	1	0	0	0	0	0	0	1	0	18014	1710	59	5	4810	5	ZNF407	18	72353080	Splice_Site	SNP	T	TCGA-05-4398-01A-01D-1265-08	1902002	72353080	5724168	1638	29805											
ATP9B	374868	broad.mit.edu	37	chr18	77119331	77119331	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagtttctcacgcccattGcactccgctcttggtcttgc	8	14	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77119331	C	C	77119331	1	2	11	0	1	0	0	0	0	0	0	0	1203	1334	46	4		4	ATP9B	18	77119331	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	4766251	77119331	957917	1639	29806											
NFATC1	4772	broad.mit.edu	37	chr18	77221367	77221367	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgggacctgtgcaagccgGtgagtgcctttggcgcagct	15	12	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77221367	T	T	77221367	5	4	11	1	0	0	0	0	0	0	1	0	10456	1275	44	3	2078	3	NFATC1	18	77221367	Splice_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08	102036	77221367	855881	1640	29807											
THEG	51298	broad.mit.edu	37	chr19	367050	367050	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcaggaaatgcctagcctGaggcacctacttactggcca	9	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	367050	T	T	367050	1	4	11	0	1	0	0	0	0	0	0	0	15980	1305	45	3		3	THEG	19	367050	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08		367050	58761933	1641	29808											
ABCA7	10347	broad.mit.edu	37	chr19	1053779	1053779	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctctgagcccctgcttgtCtccccagatcttcctgaagg	9	15	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1053779	G	G	1053779	1	3	11	0	1	0	0	0	0	0	0	0	37	928	32	4		4	ABCA7	19	1053779	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	686729	1053779	58075204	1642	29809											
PCSK4	54760	broad.mit.edu	37	chr19	1483271	1483271	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggccgccccctctcctctgCgggccgctcaccgtatggcc	11	20	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1483271	G	G	1483271	1	3	11	0	1	0	0	0	0	0	0	0	11696	783	27	4		4	PCSK4	19	1483271	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	429492	1483271	57645712	1643	29810											
AES	166	broad.mit.edu	37	chr19	3055757	3055757	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaagccggcttcagtccTgggcgggtggcaggtgcagg	19	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3055757	G	G	3055757	1	3	11	0	1	0	0	0	0	0	0	0	352	1595	55	5		5	AES	19	3055757	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1572486	3055757	56073226	1644	29811											
GIPC3	126326	broad.mit.edu	37	chr19	3586949	3586950	+	Missense_Mutation	DNP	CC	AG	AG													ctccgggagctgcccaagtcCcagcccttcaccctgcgcct							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	3586950	AG	AG	3586949	3	1	11	1	0	0	0	0	1	0	0	0	6458	610	22	2	559	2	GIPC3	19	3586949	Missense_Mutation	DNP	CC	TCGA-05-4398-01A-01D-1265-08	531192	3586949	55542034	1645	29812											
TJP3	27134	broad.mit.edu	37	chr19	3735930	3735930	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagagcatggaggatcGtgggtatgtaccccagaaga	14	8	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3735930	A	A	3735930	3	1	11	1	0	0	0	0	1	0	0	0	16054	1145	40	4	1257	4	TJP3	19	3735930	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	148981	3735930	55393053	1646	29813											
ARHGEF18	23370	broad.mit.edu	37	chr19	7511867	7511867	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagcagactcagacgaattaGatgaaaatactctttggcag	9	7	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7511867	A	A	7511867	1	1	11	0	1	0	0	0	0	0	0	0	903	957	33	4		4	ARHGEF18	19	7511867	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3775937	7511867	51617116	1647	29814											
PNPLA6	10908	broad.mit.edu	37	chr19	7625548	7625548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggatgtgggctaccaGtacgggaaggcggtgtttgg	17	8	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7625548	T	T	7625548	3	4	11	1	0	0	0	0	1	0	0	0	12264	1020	36	3	3862	3	PNPLA6	19	7625548	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	113681	7625548	51503435	1648	29815											
FBN3	84467	broad.mit.edu	37	chr19	8130912	8130912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctcaccacctccagcCggtaggttccaggccccggc	12	17	1	0	rs139098536		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8130912	A	A	8130912	3	1	11	1	0	0	0	0	1	0	0	0	5761	652	23	1	112	1	FBN3	19	8130912	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	505364	8130912	50998071	1649	29816											
FBN3	84467	broad.mit.edu	37	chr19	8194190	8194190	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacacagcggtagctgccccGaaggttctcgcacacgccat	11	15	1	0	rs150195254		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8194190	T	T	8194190	2	4	11	1	0	0	0	0	0	0	0	1	5761	1057	37	3		3	FBN3	19	8194190	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	63278	8194190	50934793	1650	29817											
ADAMTS10	81794	broad.mit.edu	37	chr19	8656629	8656629	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacggtgcccggcctctgaTagctgtttttaatgcttcct	9	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8656629	C	C	8656629	1	2	11	0	1	0	0	0	0	0	0	0	256	1421	49	5		5	ADAMTS10	19	8656629	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	462439	8656629	50472354	1651	29818											
MUC16	94025	broad.mit.edu	37	chr19	9009842	9009842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaccatgcatcccttgcCttcaatgacagaatttattt	4	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009842	A	A	9009842	1	1	11	0	1	0	0	0	0	0	0	0	10067	696	24	2		2	MUC16	19	9009842	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	353213	9009842	50119141	1652	29819											
MUC16	94025	broad.mit.edu	37	chr19	9012535	9012535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttgaacatgggaccaaGctgtggaggagggagaagga	17	5	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9012535	T	T	9012535	3	4	11	1	0	0	0	0	1	0	0	0	10067	985	34	3	5052	3	MUC16	19	9012535	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2693	9012535	50116448	1653	29820											
MUC16	94025	broad.mit.edu	37	chr19	9019538	9019538	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatgggtttaagaggaggGgccagctcctgctccactta	12	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9019538	A	A	9019538	1	1	11	0	1	0	0	0	0	0	0	0	10067	1247	43	4		4	MUC16	19	9019538	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	7003	9019538	50109445	1654	29821											
MUC16	94025	broad.mit.edu	37	chr19	9046404	9046404	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actagtgatctgtgaagtcaCcatctctggtgcaccaggtg	11	10	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9046404	T	T	9046404	3	4	11	1	0	0	0	0	1	0	0	0	10067	507	18	4	8616	4	MUC16	19	9046404	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	26866	9046404	50082579	1655	29822											
MUC16	94025	broad.mit.edu	37	chr19	9046491	9046491	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccattacaggtgtggcatCtggactactatgggaaaaac	12	8	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9046491	T	T	9046491	3	4	11	1	0	0	0	0	1	0	0	0	10067	913	32	4	8703	4	MUC16	19	9046491	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	87	9046491	50082492	1656	29823											
MUC16	94025	broad.mit.edu	37	chr19	9048898	9048899	+	Missense_Mutation	DNP	GG	TT	TT													ctggcttcttccccatgactGgtggccattgaaggtgtggt							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	9048899	TT	TT	9048898	3	4	11	1	0	0	0	0	1	0	0	0	10067	1335	47	2	11110	2	MUC16	19	9048898	Missense_Mutation	DNP	GG	TCGA-05-4398-01A-01D-1265-08	2407	9048898	50080085	1657	29824											
MUC16	94025	broad.mit.edu	37	chr19	9072226	9072226	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatcttcactaggccagAggtgagaagtgaagtcatag	12	6	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9072226	T	T	9072226	3	4	11	1	0	0	0	0	1	0	0	0	10067	304	11	5	28631	5	MUC16	19	9072226	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	23328	9072226	50056757	1658	29825											
COL5A3	50509	broad.mit.edu	37	chr19	10091538	10091538	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctctctccacgggaaccctGaacaaaaaaaaaaggcaaag	7	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10091538	T	T	10091538	1	4	11	0	1	0	0	0	0	0	0	0	3730	1305	45	3		3	COL5A3	19	10091538	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1019312	10091538	49037445	1659	29826											
TNPO2	30000	broad.mit.edu	37	chr19	12812375	12812375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtctcacccctgcctgCtcccggaactagatcagggc	11	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12812375	A	A	12812375	1	1	11	0	1	0	0	0	0	0	0	0	16459	812	28	3		3	TNPO2	19	12812375	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2720837	12812375	46316608	1660	29827											
HOOK2	29911	broad.mit.edu	37	chr19	12878325	12878325	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctcttcgcatcccctgtcCccgcccctagggtcttcttc	7	19	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12878325	G	G	12878325	1	3	11	0	1	0	0	0	0	0	0	0	7350	638	22	4		4	HOOK2	19	12878325	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	65950	12878325	46250658	1661	29828											
RNASEH2A	10535	broad.mit.edu	37	chr19	12923878	12923878	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaacttggactgtcaccAttgcccaccctaccccagat	7	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12923878	C	C	12923878	1	2	11	0	1	0	0	0	0	0	0	0	13523	232	8	5		5	RNASEH2A	19	12923878	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	45553	12923878	46205105	1662	29829											
RNASEH2A	10535	broad.mit.edu	37	chr19	12923894	12923894	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccattgcccaccctacccCagatcccaagacaaaagcgt	5	18	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12923894	T	T	12923894	1	4	11	0	1	0	0	0	0	0	0	0	13523	609	21	4		4	RNASEH2A	19	12923894	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	16	12923894	46205089	1663	29830											
MRI1	84245	broad.mit.edu	37	chr19	13883024	13883024	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgggggtctttgcccctGaggagctccggacagcccta	13	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13883024	T	T	13883024	4	4	11	1	0	0	0	0	0	1	0	0	9864	1291	45	3	1154	3	MRI1	19	13883024	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	959130	13883024	45245959	1664	29831											
CC2D1A	54862	broad.mit.edu	37	chr19	14024011	14024011	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcccctcatccggggctgGagaccaccttgcaggagagg	15	13	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14024011	T	T	14024011	4	4	11	1	0	0	0	0	0	1	0	0	2752	1175	41	3	427	3	CC2D1A	19	14024011	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	140987	14024011	45104972	1665	29832											
EMR3	84658	broad.mit.edu	37	chr19	14740861	14740861	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtttacctgctggctgAggaggcagtagaccaagaag	14	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14740861	T	T	14740861	3	4	11	1	0	0	0	0	1	0	0	0	5148	304	11	5	168	5	EMR3	19	14740861	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	716850	14740861	44388122	1666	29833											
ZNF333	84449	broad.mit.edu	37	chr19	14829857	14829857	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgggcgagccttcagtgAgccctcatccctcaggaaac	11	13	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14829857	T	T	14829857	3	4	11	1	0	0	0	0	1	0	0	0	17976	304	11	5	1760	5	ZNF333	19	14829857	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	88996	14829857	44299126	1667	29834											
SLC1A6	6511	broad.mit.edu	37	chr19	15082552	15082552	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcctgggctctctcacctgTgaccaggctggagacaatga	13	12	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15082552	A	A	15082552	3	1	11	1	0	0	0	0	1	0	0	0	14549	1696	59	5	1386	5	SLC1A6	19	15082552	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	252695	15082552	44046431	1668	29835											
FKBP8	23770	broad.mit.edu	37	chr19	18650647	18650647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtccagagggggctggcCcaacactggggcacaaacca	14	13	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18650647	A	A	18650647	1	1	11	0	1	0	0	0	0	0	0	0	5971	638	22	2		2	FKBP8	19	18650647	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3568095	18650647	40478336	1669	29836											
CILP2	148113	broad.mit.edu	37	chr19	19655881	19655881	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccctacctggacaggctgGggtaccgtcggacggaccac	14	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19655881	A	A	19655881	3	1	11	1	0	0	0	0	1	0	0	0	3461	1232	43	4	2557	4	CILP2	19	19655881	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1005234	19655881	39473102	1670	29837											
ZNF253	56242	broad.mit.edu	37	chr19	19990929	19990929	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaacctttaactatggaaaGacatgagatgattgccaaac	7	7	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19990929	T	T	19990929	3	4	11	1	0	0	0	0	1	0	0	0	17923	942	33	3	210	3	ZNF253	19	19990929	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	335048	19990929	39138054	1671	29838											
ZNF100	163227	broad.mit.edu	37	chr19	21909902	21909902	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagcctttgccgcattcTtcacatttgtagaatttctc	5	10	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21909902	C	C	21909902	2	2	11	1	0	0	0	0	0	0	0	1	17839	1606	56	5		5	ZNF100	19	21909902	Silent	SNP	T	TCGA-05-4398-01A-01D-1265-08	1918973	21909902	37219081	1672	29839											
ZNF257	113835	broad.mit.edu	37	chr19	22272135	22272135	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagccttttaatcgtttctCataccttaccgtacataaga	4	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22272135	T	T	22272135	3	4	11	1	0	0	0	0	1	0	0	0	17926	838	29	4	1597	4	ZNF257	19	22272135	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	362233	22272135	36856848	1673	29840											
ZNF99	7652	broad.mit.edu	37	chr19	22941892	22941892	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatgaattatcttatgtttCataagggttgaggaattgtt	10	2	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22941892	G	G	22941892	1	3	11	0	1	0	0	0	0	0	0	0	18333	841	29	4		4	ZNF99	19	22941892	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	669757	22941892	36187091	1674	29841											
ZNF91	7644	broad.mit.edu	37	chr19	23544297	23544297	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgcctaaaagctttgccaCattcttcacatttgtagggc	7	10	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23544297	G	G	23544297	3	3	11	1	0	0	0	0	1	0	0	0	18329	478	17	4	2095	4	ZNF91	19	23544297	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	602405	23544297	35584686	1675	29842											
C19orf2	8725	broad.mit.edu	37	chr19	30503514	30503514	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctatttaatctgaaaagtCataagattaaattaattcta	4	4	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30503514	T	T	30503514	1	4	11	0	1	0	0	0	0	0	0	0	1930	841	29	4		4	C19orf2	19	30503514	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6959217	30503514	28625469	1676	29843											
ZNF536	9745	broad.mit.edu	37	chr19	30935936	30935936	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacaagcactccctcctGggatgcctcaatctcgtgcc	11	15	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935936	T	T	30935936	2	4	11	1	0	0	0	0	0	0	0	1	18101	1335	47	2		2	ZNF536	19	30935936	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	432422	30935936	28193047	1677	29844											
TSHZ3	57616	broad.mit.edu	37	chr19	31768572	31768572	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttcaggcgggtggtcggtGatgatggccgtgctgccact	17	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768572	T	T	31768572	2	4	11	1	0	0	0	0	0	0	0	1	16750	1280	45	3		3	TSHZ3	19	31768572	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	832636	31768572	27360411	1678	29845											
DPY19L3	147991	broad.mit.edu	37	chr19	32944168	32944168	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaacctttcagtattcattGcaagaaaacttcaggtagga	7	7	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32944168	A	A	32944168	3	1	11	1	0	0	0	0	1	0	0	0	4782	1319	46	4	1003	4	DPY19L3	19	32944168	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1175596	32944168	26184815	1679	29846											
CCDC123	84902	broad.mit.edu	37	chr19	33444457	33444457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatccttagcaatgcaCtaatttaccaaaagttaaca	4	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33444457	A	A	33444457	1	1	11	0	1	0	0	0	0	0	0	0	2785	580	20	3		3	CCDC123	19	33444457	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	500289	33444457	25684526	1680	29847											
RHPN2	85415	broad.mit.edu	37	chr19	33487164	33487164	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacccacgtgacttgcagatCcaccaagcagagcataaagg	9	13	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33487164	T	T	33487164	1	4	11	0	1	0	0	0	0	0	0	0	13460	870	30	4		4	RHPN2	19	33487164	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	42707	33487164	25641819	1681	29848											
PEPD	5184	broad.mit.edu	37	chr19	33953822	33953822	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtgtgccactgcggcgtCtcatctgttactcactcagg	11	12	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33953822	G	G	33953822	1	3	11	0	1	0	0	0	0	0	0	0	11822	928	32	4		4	PEPD	19	33953822	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	466658	33953822	25175161	1682	29849											
CD22	933	broad.mit.edu	37	chr19	35828663	35828663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgctcctccagacaccCcgaagttggagatcaaggtc	9	15	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35828663	A	A	35828663	3	1	11	1	0	0	0	0	1	0	0	0	3015	623	22	2	738	2	CD22	19	35828663	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1874841	35828663	23300320	1683	29850											
SBSN	374897	broad.mit.edu	37	chr19	36018397	36018397	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgagaccatggtggacccCctggccaaatctccctgcct	9	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36018397	G	G	36018397	1	3	11	0	1	0	0	0	0	0	0	0	13976	623	22	4		4	SBSN	19	36018397	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	189734	36018397	23110586	1684	29851											
GAPDHS	26330	broad.mit.edu	37	chr19	36033775	36033775	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtctgcgtgcataccccAagaggggtaagggtggaggg	17	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36033775	G	G	36033775	1	3	11	0	1	0	0	0	0	0	0	0	6299	145	5	5		5	GAPDHS	19	36033775	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	15378	36033775	23095208	1685	29852											
UPK1A	11045	broad.mit.edu	37	chr19	36159322	36159322	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccagggctgctggcccCgagcagaccttcctaaccca	12	16	0	1	rs144559702	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36159322	T	T	36159322	1	4	11	0	1	0	0	0	0	0	0	0	17133	667	23	4		4	UPK1A	19	36159322	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	125547	36159322	22969661	1686	29853											
ZFP30	22835	broad.mit.edu	37	chr19	38126484	38126484	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagggtttttctccagtatGaagtttgtgatgtagtcgaa	11	4	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38126484	A	A	38126484	3	1	11	1	0	0	0	0	1	0	0	0	17770	1290	45	4	605	4	ZFP30	19	38126484	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1967162	38126484	21002499	1687	29854											
CATSPERG	57828	broad.mit.edu	37	chr19	38861100	38861100	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaatttccctgtcactgtgGatgcagattgtggactgtgt	11	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38861100	C	C	38861100	1	2	11	0	1	0	0	0	0	0	0	0	2718	1189	41	4		4	CATSPERG	19	38861100	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	734616	38861100	20267883	1688	29855											
GGN	199720	broad.mit.edu	37	chr19	38880851	38880851	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgagagatgaagttggagggGagatgagggttgagggaaca	20	1	0	6			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38880851	C	C	38880851	1	2	11	0	1	0	0	0	0	0	0	0	6422	1189	41	4		4	GGN	19	38880851	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08	19751	38880851	20248132	1689	29856											
CYP2A6	1548	broad.mit.edu	37	chr19	41349862	41349862	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccattctggccaggccttCtccgaaacagttccgctttc	7	16	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41349862	G	G	41349862	3	3	11	1	0	0	0	0	1	0	0	0	4195	922	32	4	164	4	CYP2A6	19	41349862	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2469011	41349862	17779121	1690	29857											
CYP2A7	1549	broad.mit.edu	37	chr19	41533259	41533259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtactgggatgttttgcCcccaggttctcacagtcagg	11	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41533259	A	A	41533259	1	1	11	0	1	0	0	0	0	0	0	0	4196	638	22	2		2	CYP2A7	19	41533259	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	183397	41533259	17595724	1691	29858											
ATP1A3	478	broad.mit.edu	37	chr19	42471568	42471568	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggggactggaggggacGcagaggggcagtctcccagg	19	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42471568	C	C	42471568	1	2	11	0	1	0	0	0	0	0	0	0	1134	1102	38	4		4	ATP1A3	19	42471568	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	938309	42471568	16657415	1692	29859											
PSG3	5671	broad.mit.edu	37	chr19	43233356	43233356	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcatagagcccgctatGctttgtagtaatctggggga	13	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43233356	A	A	43233356	3	1	11	1	0	0	0	0	1	0	0	0	12762	1319	46	4	132	4	PSG3	19	43233356	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	761788	43233356	15895627	1693	29860											
PSG8	440533	broad.mit.edu	37	chr19	43258366	43258366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttaggaggagaatttgGgatttgcttgtgcccatggg	17	4	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43258366	T	T	43258366	1	4	11	0	1	0	0	0	0	0	0	0	12767	1247	43	2		2	PSG8	19	43258366	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	25010	43258366	15870617	1694	29861											
PSG8	440533	broad.mit.edu	37	chr19	43259311	43259311	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctgaccatttagccaccAaatgtaggtgtagttctcac	8	11	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43259311	T	T	43259311	3	4	11	1	0	0	0	0	1	0	0	0	12767	130	5	5	492	5	PSG8	19	43259311	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	945	43259311	15869672	1695	29862											
PSG4	5672	broad.mit.edu	37	chr19	43708535	43708535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacaaacacatacacacaCtaaaggggcgtgagtgtatg	9	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43708535	A	A	43708535	1	1	11	0	1	0	0	0	0	0	0	0	12763	580	20	3		3	PSG4	19	43708535	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	449224	43708535	15420448	1696	29863											
FOXA3	3171	broad.mit.edu	37	chr19	46376291	46376291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctactaccagggcctctattCccgctctttgcttaatgcat	6	14	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46376291	A	A	46376291	3	1	11	1	0	0	0	0	1	0	0	0	6049	855	30	3	1034	3	FOXA3	19	46376291	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	2667756	46376291	12752692	1697	29864											
IGFL4	444882	broad.mit.edu	37	chr19	46543514	46543514	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgagagcccaaagactcCaggcagcagtgctggaagca	12	11	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46543514	T	T	46543514	2	4	11	1	0	0	0	0	0	0	0	1	7659	581	21	4		4	IGFL4	19	46543514	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	167223	46543514	12585469	1698	29865											
CCDC114	93233	broad.mit.edu	37	chr19	48800267	48800284	+	In_Frame_Del	DEL	GGGCCAGTGCTGGAGGCA	-	-													ctttgctggtggaggagcccGggccagtgctggaggcaggg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48800284	-	-	48800267	7	5	11	1	0	1	0	1	0	0	0	0	2777	1116	39	0	37	0	CCDC114	19	48800267	In_Frame_Del	DEL	GGGCCAGTGCTGGAGGCA	TCGA-05-4398-01A-01D-1265-08	2256753	48800267	10328716	1699	29866											
IZUMO1	284359	broad.mit.edu	37	chr19	49247528	49247528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaaagacgatggaagaGggggttgggggaagagctgg	20	2	0	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49247528	T	T	49247528	1	4	11	0	1	0	0	0	0	0	0	0	8003	1015	35	2		2	IZUMO1	19	49247528	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	447261	49247528	9881455	1700	29867											
TULP2	7288	broad.mit.edu	37	chr19	49387023	49387023	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggactcacatttagtggctgGacattgattcgctggttctg	12	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49387023	C	C	49387023	2	2	11	1	0	0	0	0	0	0	0	1	16900	1161	41	4		4	TULP2	19	49387023	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	139495	49387023	9741960	1701	29868											
NUP62	23636	broad.mit.edu	37	chr19	50411471	50411471	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgaactccctagggacCtgcgggccccagggctgctg	13	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50411471	T	T	50411471	1	4	11	0	1	0	0	0	0	0	0	0	10863	696	24	4		4	NUP62	19	50411471	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	1024448	50411471	8717512	1702	29869											
SIGLEC11	114132	broad.mit.edu	37	chr19	50455139	50455139	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccccagcagacagaggctgGgctctcacctgggagatggg	16	12	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50455139	C	C	50455139	1	2	11	0	1	0	0	0	0	0	0	0	14420	1247	43	4		4	SIGLEC11	19	50455139	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	43668	50455139	8673844	1703	29870											
SIGLEC9	27180	broad.mit.edu	37	chr19	51628974	51628974	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccctatgatctcctggaTagggacctccgtgtcccccc	8	18	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51628974	C	C	51628974	3	2	11	1	0	0	0	0	1	0	0	0	14428	1406	49	5	548	5	SIGLEC9	19	51628974	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	1173835	51628974	7500009	1704	29871											
CD33	945	broad.mit.edu	37	chr19	51729250	51729250	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcataatcaccccacggcccCaggaccacggcaccaacctg	7	19	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51729250	T	T	51729250	4	4	11	1	0	0	0	0	0	1	0	0	3035	595	21	4	620	4	CD33	19	51729250	Nonsense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	100276	51729250	7399733	1705	29872											
SIGLEC8	27181	broad.mit.edu	37	chr19	51960654	51960654	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaggcttgaaccccatccCctgccctcaggaacacctcc	6	20	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51960654	T	T	51960654	1	4	11	0	1	0	0	0	0	0	0	0	14427	638	22	4		4	SIGLEC8	19	51960654	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	231404	51960654	7168329	1706	29873											
FPR2	2358	broad.mit.edu	37	chr19	52272376	52272376	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttggattcttgctctagtCcttaccttgccagttttcct	6	13	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52272376	A	A	52272376	2	1	11	1	0	0	0	0	0	0	0	1	6099	842	30	3		3	FPR2	19	52272376	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	311722	52272376	6856607	1707	29874											
FPR3	2359	broad.mit.edu	37	chr19	52327946	52327946	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagaaagactgattcgCtctttgcccactagtttgga	8	10	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52327946	A	A	52327946	2	1	11	1	0	0	0	0	0	0	0	1	6100	784	28	3		3	FPR3	19	52327946	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	55570	52327946	6801037	1708	29875											
PPP2R1A	5518	broad.mit.edu	37	chr19	52729033	52729033	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggaccaggatgtggacgtCaaatactttgcccaggaggc	13	10	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52729033	T	T	52729033	2	4	11	1	0	0	0	0	0	0	0	1	12483	813	29	4		4	PPP2R1A	19	52729033	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	401087	52729033	6399950	1709	29876											
ZNF611	81856	broad.mit.edu	37	chr19	53208717	53208717	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtttctctccagtatgacCtatcttatgtgtctcaaggc	8	10	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53208717	G	G	53208717	3	3	11	1	0	0	0	0	1	0	0	0	18164	681	24	4	530	4	ZNF611	19	53208717	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	479684	53208717	5920266	1710	29877											
NLRP12	91662	broad.mit.edu	37	chr19	54327411	54327411	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcgacagaggccgtccctGcctgcggttcgtagcatggg	16	12	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54327411	C	C	54327411	2	2	11	1	0	0	0	0	0	0	0	1	10569	1306	46	4		4	NLRP12	19	54327411	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	1118694	54327411	4801572	1711	29878											
LILRA2	11027	broad.mit.edu	37	chr19	55087675	55087675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatgaggggagtgaagcGggagggtccacaggggaggg	22	4	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55087675	T	T	55087675	1	4	11	0	1	0	0	0	0	0	0	0	8857	1131	39	1		1	LILRA2	19	55087675	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	760264	55087675	4041308	1712	29879											
LILRB4	11006	broad.mit.edu	37	chr19	55174924	55174924	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaaaaaaaaaaaaaaatCtcagggtaaagagaggacct	7	4	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55174924	T	T	55174924	1	4	11	0	1	0	0	0	0	0	0	0	8865	928	32	4		4	LILRB4	19	55174924	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	87249	55174924	3954059	1713	29880											
KIR3DL3	115653	broad.mit.edu	37	chr19	55246701	55246701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgattagcttcttattgGtgtcttgtcttcctccaggt	8	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55246701	T	T	55246701	1	4	11	0	1	0	0	0	0	0	0	0	8393	1276	44	3		3	KIR3DL3	19	55246701	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	71777	55246701	3882282	1714	29881											
KIR3DL1	3811	broad.mit.edu	37	chr19	55341634	55341634	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagagaaaaatcactcgCccttctcagaggcccaagac	7	14	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55341634	A	A	55341634	2	1	11	1	0	0	0	0	0	0	0	1	8391	726	26	3		3	KIR3DL1	19	55341634	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	94933	55341634	3787349	1715	29882											
RDH13	112724	broad.mit.edu	37	chr19	55559583	55559583	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtccacatgctctacttTtgctgactctgttctggatc	9	11	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55559583	C	C	55559583	1	2	11	0	1	0	0	0	0	0	0	0	13300	1856	64	5		5	RDH13	19	55559583	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	217949	55559583	3569400	1716	29883											
PTPRH	5794	broad.mit.edu	37	chr19	55696802	55696802	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtacgttcccagggtcccgtCtaacacaactgtctgagccc	9	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55696802	T	T	55696802	1	4	11	0	1	0	0	0	0	0	0	0	12911	928	32	4		4	PTPRH	19	55696802	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	137219	55696802	3432181	1717	29884											
NLRP13	126204	broad.mit.edu	37	chr19	56416265	56416265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgttctagatatctgtGcccatagagtcatatctaga	7	9	4	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56416265	T	T	56416265	1	4	11	0	1	0	0	0	0	0	0	0	10570	1334	46	3		3	NLRP13	19	56416265	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	719463	56416265	2712718	1718	29885											
ZIM2	23619	broad.mit.edu	37	chr19	57290678	57290678	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggcccaggggactttgagGaaagctctctgactagcatt	12	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57290678	A	A	57290678	1	1	11	0	1	0	0	0	0	0	0	0	17810	1189	41	4		4	ZIM2	19	57290678	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	874413	57290678	1838305	1719	29886											
ZIK1	284307	broad.mit.edu	37	chr19	58096448	58096448	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaccatccagttctttgaCctaaggactcttcacaaact	5	14	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58096448	T	T	58096448	1	4	11	0	1	0	0	0	0	0	0	0	17809	522	18	4		4	ZIK1	19	58096448	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	805770	58096448	1032535	1720	29887											
ZSCAN1	284312	broad.mit.edu	37	chr19	58565273	58565273	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagggcccccgggagtccGtcccacccagggatggagcc	15	16	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58565273	A	A	58565273	3	1	11	1	0	0	0	0	1	0	0	0	18355	1145	40	4	1095	4	ZSCAN1	19	58565273	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	468825	58565273	563710	1721	29888											
ZNF135	7694	broad.mit.edu	37	chr19	58570603	58570603	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaatgcgcgcgcggctctCtgggaaatggagttaggctc	16	9	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58570603	A	A	58570603	1	1	11	0	1	0	0	0	0	0	0	0	17851	928	32	3		3	ZNF135	19	58570603	5'Flank	SNP	C	TCGA-05-4398-01A-01D-1265-08	5330	58570603	558380	1722	29889											
ZBTB45	84878	broad.mit.edu	37	chr19	59028649	59028649	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggcaggggcgtgggcgcaGaggtgcccggggctcgagcg	23	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59028649	A	A	59028649	3	1	11	1	0	0	0	0	1	0	0	0	17672	942	33	4	1151	4	ZBTB45	19	59028649	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	458046	59028649	100334	1723	29890											
SIRPG	55423	broad.mit.edu	37	chr20	1616967	1616967	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgtgctgcggatgctGtaggccacactctgtcctgt	13	12	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1616967	T	T	1616967	4	4	11	1	0	0	0	0	0	1	0	0	14449	1372	48	3	560	3	SIRPG	20	1616967	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08		1616967	61408553	1724	29891											
TMC2	117532	broad.mit.edu	37	chr20	2592925	2592925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggaacgagagtgtcccccGaccacccctgcaccctgcag	10	17	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2592925	T	T	2592925	3	4	11	1	0	0	0	0	1	0	0	0	16108	1058	37	3	1732	3	TMC2	20	2592925	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	975958	2592925	60432595	1725	29892											
CHGB	1114	broad.mit.edu	37	chr20	5903186	5903186	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcgggcacagccgagaGcgagcggatgagccccagtg	19	11	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5903186	A	A	5903186	2	1	11	1	0	0	0	0	0	0	0	1	3370	962	34	4		4	CHGB	20	5903186	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3310261	5903186	57122334	1726	29893											
PLCB1	23236	broad.mit.edu	37	chr20	8630054	8630054	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagcagatcggaagcgAgttgaaactgctttagaggc	12	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8630054	T	T	8630054	2	4	11	1	0	0	0	0	0	0	0	1	12122	291	11	5		5	PLCB1	20	8630054	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	2726868	8630054	54395466	1727	29894											
PAK7	57144	broad.mit.edu	37	chr20	9520304	9520304	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaatctgaggactaacacaGacacctaacccagtccccaa	5	16	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9520304	T	T	9520304	1	4	11	0	1	0	0	0	0	0	0	0	11499	957	33	3		3	PAK7	20	9520304	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	890250	9520304	53505216	1728	29895											
PAK7	57144	broad.mit.edu	37	chr20	9546647	9546647	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcatacgatgccggttgAgccttccccgattttgataa	10	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9546647	T	T	9546647	3	4	11	1	0	0	0	0	1	0	0	0	11499	304	11	5	808	5	PAK7	20	9546647	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	26343	9546647	53478873	1729	29896											
SNAP25	6616	broad.mit.edu	37	chr20	10286935	10286935	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctagtaggtctgcacaCataacacacatcagtccacc	5	13	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10286935	A	A	10286935	1	1	11	0	1	0	0	0	0	0	0	0	14944	493	17	3		3	SNAP25	20	10286935	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	740288	10286935	52738585	1730	29897											
CSRP2BP	57325	broad.mit.edu	37	chr20	18123564	18123564	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaatggataccagccaGtaaggagcttctcaattcct	7	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18123564	T	T	18123564	5	4	11	1	0	0	0	0	0	0	1	0	4002	1043	36	3	262	3	CSRP2BP	20	18123564	Splice_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08	7836629	18123564	44901956	1731	29898											
C20orf26	26074	broad.mit.edu	37	chr20	20226730	20226730	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaaattgcacttaactgCttgttctttttcatttttct	4	8	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20226730	A	A	20226730	1	1	11	0	1	0	0	0	0	0	0	0	2128	812	28	3		3	C20orf26	20	20226730	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2103166	20226730	42798790	1732	29899											
GZF1	64412	broad.mit.edu	37	chr20	23350848	23350848	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgtgtcatccaagctttcgGataaattgctgtcttttgca	8	8	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23350848	C	C	23350848	3	2	11	1	0	0	0	0	1	0	0	0	6979	1174	41	4	1924	4	GZF1	20	23350848	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3124118	23350848	39674672	1733	29900											
CST1	1469	broad.mit.edu	37	chr20	23729586	23729586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccaaacatgtgtagggCagaggctgacacatacgcac	10	13	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23729586	A	A	23729586	1	1	11	0	1	0	0	0	0	0	0	0	4004	725	25	3		3	CST1	20	23729586	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	378738	23729586	39295934	1734	29901											
NINL	22981	broad.mit.edu	37	chr20	25481599	25481599	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggctggagcacagggaCacgagggatgaggttgtggt	19	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25481599	G	G	25481599	2	3	11	1	0	0	0	0	0	0	0	1	10515	465	17	4		4	NINL	20	25481599	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	1752013	25481599	37543921	1735	29902											
MYLK2	85366	broad.mit.edu	37	chr20	30418532	30418532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggcagcttgggcctctgCctcaaggagcctggggtttg	15	11	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30418532	A	A	30418532	1	1	11	0	1	0	0	0	0	0	0	0	10151	754	26	3		3	MYLK2	20	30418532	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	4936933	30418532	32606988	1736	29903											
HCK	3055	broad.mit.edu	37	chr20	30676371	30676371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcccctctcccccatatagGaagcttgctggactttctga	7	15	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30676371	A	A	30676371	3	1	11	1	0	0	0	0	1	0	0	0	7060	1188	41	4	1060	4	HCK	20	30676371	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	257839	30676371	32349149	1737	29904											
RPN2	6185	broad.mit.edu	37	chr20	35867091	35867091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagtgagcagctttggcCtggctttgactgtataagac	12	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35867091	T	T	35867091	1	4	11	0	1	0	0	0	0	0	0	0	13719	696	24	4		4	RPN2	20	35867091	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	5190720	35867091	27158429	1738	29905											
KIAA1755	85449	broad.mit.edu	37	chr20	36868868	36868868	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgccacactgtatactaaAcccctgaagctgagccagcc	7	15	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36868868	T	T	36868868	1	4	11	0	1	0	0	0	0	0	0	0	8327	58	2	5		5	KIAA1755	20	36868868	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1001777	36868868	26156652	1739	29906											
BPI	671	broad.mit.edu	37	chr20	36936026	36936026	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggatcaagattcctgActactcagacagctttaaga	9	8	2	5			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36936026	G	G	36936026	3	3	11	1	0	0	0	0	1	0	0	0	1499	275	10	5	206	5	BPI	20	36936026	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	67158	36936026	26089494	1740	29907											
ACTR5	79913	broad.mit.edu	37	chr20	37400088	37400088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcttggagtgcactggGcccacctatgtgtatatttc	10	10	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37400088	T	T	37400088	1	4	11	0	1	0	0	0	0	0	0	0	215	1218	42	3		3	ACTR5	20	37400088	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	464062	37400088	25625432	1741	29908											
PTPRT	11122	broad.mit.edu	37	chr20	40747085	40747085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccatgacgatgctggcGgagttctcctgccagatcat	12	11	2	3	rs34284587		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40747085	T	T	40747085	2	4	11	1	0	0	0	0	0	0	0	1	12920	1103	39	1		1	PTPRT	20	40747085	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	3346997	40747085	22278435	1742	29909											
PTPRT	11122	broad.mit.edu	37	chr20	40770818	40770818	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctgtccctggacctattCtcttgttcattgtttcaaat	6	10	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40770818	A	A	40770818	1	1	11	0	1	0	0	0	0	0	0	0	12920	928	32	3		3	PTPRT	20	40770818	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	23733	40770818	22254702	1743	29910											
JPH2	57158	broad.mit.edu	37	chr20	42747054	42747054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacgggcatccaggaaaCcacttgggcatctcagattc	9	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42747054	A	A	42747054	1	1	11	0	1	0	0	0	0	0	0	0	8031	522	18	3		3	JPH2	20	42747054	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1976236	42747054	20278466	1744	29911											
R3HDML	140902	broad.mit.edu	37	chr20	42972166	42972166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtactcctccgtcaggGctgagggcccctgggataac	13	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42972166	T	T	42972166	1	4	11	0	1	0	0	0	0	0	0	0	12997	1218	42	3		3	R3HDML	20	42972166	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	225112	42972166	20053354	1745	29912											
RIMS4	140730	broad.mit.edu	37	chr20	43383069	43383069	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggaccaggaacagggtgGgaccaaaggcagcctgggtg	18	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43383069	T	T	43383069	1	4	11	0	1	0	0	0	0	0	0	0	13481	1247	43	2		2	RIMS4	20	43383069	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	410903	43383069	19642451	1746	29913											
DNTTIP1	116092	broad.mit.edu	37	chr20	44437722	44437722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagccccttacccgagGctaattttcttacaacttca	5	12	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44437722	T	T	44437722	1	4	11	0	1	0	0	0	0	0	0	0	4721	1218	42	3		3	DNTTIP1	20	44437722	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1054653	44437722	18587798	1747	29914											
MMP9	4318	broad.mit.edu	37	chr20	44637694	44637694	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaatctcaccgacaggcaGctggcagaggtgggcaaaca	12	12	1	1	rs142807270		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44637694	C	C	44637694	3	2	11	1	0	0	0	0	1	0	0	0	9763	962	34	4	131	4	MMP9	20	44637694	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	199972	44637694	18387826	1748	29915											
SLC12A5	57468	broad.mit.edu	37	chr20	44664168	44664168	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtggaaaaaagaagccGgtgcaggtgaggacctcggg	19	6	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44664168	T	T	44664168	2	4	11	1	0	0	0	0	0	0	0	1	14499	1103	39	1		1	SLC12A5	20	44664168	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	26474	44664168	18361352	1749	29916											
CDH22	64405	broad.mit.edu	37	chr20	44815276	44815276	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgggagcttcaggcacCaggcggaaatagaagcggtg	16	8	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44815276	T	T	44815276	2	4	11	1	0	0	0	0	0	0	0	1	3137	581	21	4		4	CDH22	20	44815276	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	151108	44815276	18210244	1750	29917											
PTGIS	5740	broad.mit.edu	37	chr20	48140741	48140741	+	Frame_Shift_Del	DEL	G	-	-													tggggatagcagcttccacaGgcgacttttgacactgcaca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48140741	-	-	48140741	7	5	11	1	0	1	0	1	0	0	0	0	12858	991	35	0	813	0	PTGIS	20	48140741	Frame_Shift_Del	DEL	G	TCGA-05-4398-01A-01D-1265-08	3325465	48140741	14884779	1751	29918											
TFAP2C	7022	broad.mit.edu	37	chr20	55204706	55204706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacagtccgggaggcaggGgccactggaccgaggtcggg	20	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55204706	T	T	55204706	1	4	11	0	1	0	0	0	0	0	0	0	15912	1247	43	2		2	TFAP2C	20	55204706	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	7063965	55204706	7820814	1752	29919											
STX16	8675	broad.mit.edu	37	chr20	57234644	57234644	+	Intron	SNP	T	C	C													ttctttgtgctttccccaacTggatgggactgatggggaca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57234644	C	C	57234644	1	2	11	0	1	0	0	0	0	0	0	0	15457	1595	55	5		5	STX16	20	57234644	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2029938	57234644	5790876	1753	29920	177	2									
STX16	8675	broad.mit.edu	37	chr20	57234648	57234649	+	Intron	DNP	TG	AT	AT													ttgtgctttccccaactggaTgggactgatggggacaacat							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	57234649	AT	AT	57234648	1	1	11	0	1	0	0	0	0	0	0	0	15457	1479	51	5		5	STX16	20	57234648	Intron	DNP	TG	TCGA-05-4398-01A-01D-1265-08	4	57234648	5790872	1754	29921	177	2									
TUBB1	81027	broad.mit.edu	37	chr20	57599398	57599399	+	Missense_Mutation	DNP	CG	GT	GT													ccatggctgcctgtgacctcCgccgtggccgctacctcaca							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	57599399	GT	GT	57599398	3	3	11	1	0	0	0	0	1	0	0	0	16879	652	23	4	930	4	TUBB1	20	57599398	Missense_Mutation	DNP	CG	TCGA-05-4398-01A-01D-1265-08	364750	57599398	5426122	1755	29922											
ZNF831	128611	broad.mit.edu	37	chr20	57769383	57769383	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtacccaactgggagctGggggagcctcctgggaatgc	17	10	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57769383	T	T	57769383	2	4	11	1	0	0	0	0	0	0	0	1	18314	1335	47	2		2	ZNF831	20	57769383	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	169985	57769383	5256137	1756	29923											
SS18L1	26039	broad.mit.edu	37	chr20	60754170	60754170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctaccccctgtccgggctGgggtggacgtctgtcttcct	12	15	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60754170	T	T	60754170	1	4	11	0	1	0	0	0	0	0	0	0	15294	1363	47	2		2	SS18L1	20	60754170	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2984787	60754170	2271350	1757	29924											
COL20A1	57642	broad.mit.edu	37	chr20	61937179	61937179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtatgtgcagctgcccCagtggaccaggccctccact	13	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61937179	A	A	61937179	1	1	11	0	1	0	0	0	0	0	0	0	3711	609	21	2		2	COL20A1	20	61937179	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1183009	61937179	1088341	1758	29925											
PRIC285	85441	broad.mit.edu	37	chr20	62193473	62193473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctccagagcctccctgaCcgccacgttctggctggggt	11	16	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62193473	A	A	62193473	3	1	11	1	0	0	0	0	1	0	0	0	12591	507	18	3	1508	3	PRIC285	20	62193473	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	256294	62193473	832047	1759	29926											
MYT1	4661	broad.mit.edu	37	chr20	62836921	62836921	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtttacagagctgcccCctggccaagaagaggaagct	11	13	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62836921	A	A	62836921	2	1	11	1	0	0	0	0	0	0	0	1	10200	610	22	2		2	MYT1	20	62836921	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	643448	62836921	188599	1760	29927											
TPTE	7179	broad.mit.edu	37	chr21	10998311	10998311	+	RNA	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggactagattctgattttCcatcacaatccataagttct	5	10	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10998311	A	A	10998311	1	1	11	0	1	0	0	0	0	0	0	0	16554	870	30	3		3	TPTE	21	10998311	RNA	SNP	C	TCGA-05-4398-01A-01D-1265-08		10998311	37131584	1761	29928											
BAGE2	85319	broad.mit.edu	37	chr21	11039057	11039057	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatttcagagtccatcaatCcagtagaaagttcagaatct	6	9	5	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039057	A	A	11039057	1	1	11	0	1	0	0	0	0	0	0	0	1297	870	30	3		3	BAGE2	21	11039057	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	40746	11039057	37090838	1762	29929											
USP25	29761	broad.mit.edu	37	chr21	17164020	17164020	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcagttcttatttgatgtGtgtgatagcaatggaaagtg	11	3	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17164020	A	A	17164020	1	1	11	0	1	0	0	0	0	0	0	0	17182	1392	48	4		4	USP25	21	17164020	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	6124963	17164020	30965875	1763	29930											
GABPA	2551	broad.mit.edu	37	chr21	27141328	27141328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaagatattattacgatGgggacatgatttgtaaagtt	10	2	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27141328	T	T	27141328	3	4	11	1	0	0	0	0	1	0	0	0	6217	1348	47	2	1184	2	GABPA	21	27141328	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	9977308	27141328	20988567	1764	29931											
APP	351	broad.mit.edu	37	chr21	27354704	27354704	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagcctctctttggcttTctggaaatgggcatgttcat	9	10	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27354704	C	C	27354704	3	2	11	1	0	0	0	0	1	0	0	0	817	1792	62	5	1175	5	APP	21	27354704	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	213376	27354704	20775191	1765	29932											
ADAMTS5	11096	broad.mit.edu	37	chr21	28302316	28302316	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatgccgtcacagccagttCtcacacacttcccccggacg	8	17	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28302316	A	A	28302316	3	1	11	1	0	0	0	0	1	0	0	0	269	913	32	3	686	3	ADAMTS5	21	28302316	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	947612	28302316	19827579	1766	29933											
KRTAP19-1	337882	broad.mit.edu	37	chr21	31852685	31852685	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaggcaagatcctgagtGtgaatgccagcatgtatagg	13	7	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31852685	T	T	31852685	1	4	11	0	1	0	0	0	0	0	0	0	8599	1392	48	3		3	KRTAP19-1	21	31852685	5'Flank	SNP	G	TCGA-05-4398-01A-01D-1265-08	3550369	31852685	16277210	1767	29934											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253398	32253398	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggactgctgatacgtcCtggagaccccacaggctggc	13	14	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32253398	T	T	32253398	3	4	11	1	0	0	0	0	1	0	0	0	8588	681	24	4	49	4	KRTAP11-1	21	32253398	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	400713	32253398	15876497	1768	29935											
SON	6651	broad.mit.edu	37	chr21	34923708	34923708	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctaacaccatggagacccAtatattagcatccaacacca	4	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34923708	G	G	34923708	3	3	11	1	0	0	0	0	1	0	0	0	15040	217	8	5	2181	5	SON	21	34923708	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	2670310	34923708	13206187	1769	29936											
MRPS6	64968	broad.mit.edu	37	chr21	35514856	35514856	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagggattgtcccagtcCcactcgcagaaaaattatat	9	9	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35514856	T	T	35514856	3	4	11	1	0	0	0	0	1	0	0	0	9941	623	22	4	344	4	MRPS6	21	35514856	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	591148	35514856	12615039	1770	29937											
MX2	4600	broad.mit.edu	37	chr21	42762704	42762704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactttgggaggccaagacGggcggatcacgaggtcagga	17	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42762704	T	T	42762704	1	4	11	0	1	0	0	0	0	0	0	0	10092	1131	39	1		1	MX2	21	42762704	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	7247848	42762704	5367191	1771	29938											
PRDM15	63977	broad.mit.edu	37	chr21	43231009	43231009	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaaatgtgctggaaccgtCtagataatagaatagtcgtt	9	6	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43231009	A	A	43231009	1	1	11	0	1	0	0	0	0	0	0	0	12562	928	32	3		3	PRDM15	21	43231009	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	468305	43231009	4898886	1772	29939											
PRDM15	63977	broad.mit.edu	37	chr21	43291760	43291760	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacagtgggtcacgaaagtaGacatgagaagcccactgtcc	11	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43291760	A	A	43291760	1	1	11	0	1	0	0	0	0	0	0	0	12562	957	33	4		4	PRDM15	21	43291760	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	60751	43291760	4838135	1773	29940											
ABCG1	9619	broad.mit.edu	37	chr21	43707970	43707970	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtccttcctggagcccGggctgacccccgtctgtgtc	14	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43707970	A	A	43707970	1	1	11	0	1	0	0	0	0	0	0	0	68	1131	39	4		4	ABCG1	21	43707970	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	416210	43707970	4421925	1774	29941											
U2AF1	7307	broad.mit.edu	37	chr21	44513509	44513509	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agactgcacgccgtgactgaGacacaccctgatttcaggtg	11	12	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44513509	C	C	44513509	1	2	11	0	1	0	0	0	0	0	0	0	16947	957	33	4		4	U2AF1	21	44513509	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	805539	44513509	3616386	1775	29942											
RRP1B	23076	broad.mit.edu	37	chr21	45096559	45096559	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctctgtgcccctgaagccaGaaggccaggccgtttgttct	11	14	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45096559	T	T	45096559	1	4	11	0	1	0	0	0	0	0	0	0	13799	957	33	3		3	RRP1B	21	45096559	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	583050	45096559	3033336	1776	29943											
POFUT2	23275	broad.mit.edu	37	chr21	46703410	46703410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcgtaactttgcaggaCgtaaacctggtcaataaagg	10	9	2	0	rs73910608	byFrequency;by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46703410	A	A	46703410	3	1	11	1	0	0	0	0	1	0	0	0	12279	536	19	3	1041	3	POFUT2	21	46703410	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1606851	46703410	1426485	1777	29944											
C21orf57	54059	broad.mit.edu	37	chr21	47716153	47716153	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtggcagcaggtaaggagCccatccatcccactaccgag	12	13	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47716153	T	T	47716153	1	4	11	0	1	0	0	0	0	0	0	0	2150	754	26	4		4	C21orf57	21	47716153	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1012743	47716153	413742	1778	29945											
POTEH	23784	broad.mit.edu	37	chr22	16287898	16287898	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccatctgcttttaacaGccagggaaggccggtagtag	12	11	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287898	T	T	16287898	1	4	11	1	0	0	0	0	0	0	0	0	12363	986	34	3		3	POTEH	22	16287898	Translation_Start_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08		16287898	35016668	1779	29946											
CCT8L2	150160	broad.mit.edu	37	chr22	17073111	17073111	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcaaggcttccgtcagCagaaccacgaaggctgtgcc	11	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17073111	T	T	17073111	2	4	11	1	0	0	0	0	0	0	0	1	2991	697	25	4		4	CCT8L2	22	17073111	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	785213	17073111	34231455	1780	29947											
C22orf25	128989	broad.mit.edu	37	chr22	20040998	20040998	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaccactgacgtggacAgcttgtcctacctgaagaag	10	11	1	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20040998	T	T	20040998	3	4	11	1	0	0	0	0	1	0	0	0	2161	188	7	5	318	5	C22orf25	22	20040998	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	2967887	20040998	31263568	1781	29948											
HIC2	23119	broad.mit.edu	37	chr22	21801073	21801073	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgccaccttgctcccCgggaacccatggaaggagaa	10	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21801073	A	A	21801073	1	1	11	0	1	0	0	0	0	0	0	0	7169	667	23	1		1	HIC2	22	21801073	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	1760075	21801073	29503493	1782	29949											
PPIL2	23759	broad.mit.edu	37	chr22	22039174	22039176	+	In_Frame_Del	DEL	AGA	-	-													agccaccatgaaggccccggAgaagaagaaagtggacaagc					rs140641317		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22039176	-	-	22039174	7	5	11	1	0	1	0	1	0	0	0	0	12428	304	11	0	724	0	PPIL2	22	22039174	In_Frame_Del	DEL	AGA	TCGA-05-4398-01A-01D-1265-08	238101	22039174	29265392	1783	29950											
TOP3B	8940	broad.mit.edu	37	chr22	22318788	22318788	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccattgtggccggcccctCctggagggtgacggtggctc	15	15	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22318788	A	A	22318788	1	1	11	0	1	0	0	0	0	0	0	0	16492	870	30	3		3	TOP3B	22	22318788	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	279614	22318788	28985778	1784	29951											
GSTT2	2953	broad.mit.edu	37	chr22	24323075	24323075	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggctccgcttggggaggagGagggagggtgtagaggtgca	23	5	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24323075	C	C	24323075	1	2	11	0	1	0	0	0	0	0	0	0	6912	1189	41	4		4	GSTT2	22	24323075	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2004287	24323075	26981491	1785	29952											
SEZ6L	23544	broad.mit.edu	37	chr22	26746907	26746907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggactacaggcgtgagCcaccgcacccggccaagtta	13	14	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26746907	A	A	26746907	1	1	11	0	1	0	0	0	0	0	0	0	14256	754	26	3		3	SEZ6L	22	26746907	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2423832	26746907	24557659	1786	29953											
CHEK2	11200	broad.mit.edu	37	chr22	29095762	29095762	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acggtccctcgatttctgccTaattcagggagtaattcaac	8	11	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29095762	A	A	29095762	1	1	11	0	1	0	0	0	0	0	0	0	3366	1537	53	5		5	CHEK2	22	29095762	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	2348855	29095762	22208804	1787	29954											
MTMR3	8897	broad.mit.edu	37	chr22	30416000	30416000	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctccaggtcccccccagGggagaggattccctggaggt	13	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30416000	T	T	30416000	3	4	11	1	0	0	0	0	1	0	0	0	10039	1223	43	2	2410	2	MTMR3	22	30416000	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1320238	30416000	20888566	1788	29955											
SEC14L3	266629	broad.mit.edu	37	chr22	30862426	30862426	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagagcacatcacatcttCtcctacctccatctcctgtg	5	16	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30862426	A	A	30862426	1	1	11	0	1	0	0	0	0	0	0	0	14096	928	32	3		3	SEC14L3	22	30862426	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	446426	30862426	20442140	1789	29956											
TCN2	6948	broad.mit.edu	37	chr22	31013404	31013407	+	Frame_Shift_Del	DEL	ACAG	-	-													gcttagtctcttgccgccgtAcagacagtccatctctgttc							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31013407	-	-	31013404	7	5	11	1	0	1	0	1	0	0	0	0	15829	391	14	0	1054	0	TCN2	22	31013404	Frame_Shift_Del	DEL	ACAG	TCGA-05-4398-01A-01D-1265-08	150978	31013404	20291162	1790	29957											
SMTN	6525	broad.mit.edu	37	chr22	31484540	31484540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcgggctgccctggcacGgctggcagggcagctggagt	19	12	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31484540	T	T	31484540	3	4	11	1	0	0	0	0	1	0	0	0	14928	1116	39	1	252	1	SMTN	22	31484540	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	471136	31484540	19820026	1791	29958											
SLC5A4	6527	broad.mit.edu	37	chr22	32650025	32650025	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgatctgccagccttggcctCccaaagtgctgggattacag	11	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32650025	A	A	32650025	1	1	11	0	1	0	0	0	0	0	0	0	14781	870	30	3		3	SLC5A4	22	32650025	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	1165485	32650025	18654541	1792	29959											
C22orf28	51493	broad.mit.edu	37	chr22	32784091	32784099	+	Intron	DEL	AGGAGAGGA	-	-													tataggactcaggagcctgcAggagaggaatttaaacattg							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32784099	-	-	32784091	6	5	11	0	1	1	0	1	0	0	0	0	2162	203	7	0		0	C22orf28	22	32784091	Intron	DEL	AGGAGAGGA	TCGA-05-4398-01A-01D-1265-08	134066	32784091	18520475	1793	29960											
BPIL2	254240	broad.mit.edu	37	chr22	32841622	32841622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaacctctaaagactcacCatttcatttaagttctttaa	2	11	4	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32841622	A	A	32841622	3	1	11	1	0	0	0	0	1	0	0	0	1501	608	21	2	973	2	BPIL2	22	32841622	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	57531	32841622	18462944	1794	29961											
HMOX1	3162	broad.mit.edu	37	chr22	35783020	35783020	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgcccagctctggcgagGgcctggccttcttcaccttc	10	17	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35783020	C	C	35783020	3	2	11	1	0	0	0	0	1	0	0	0	7310	1232	43	4	497	4	HMOX1	22	35783020	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2941398	35783020	15521546	1795	29962											
RBM9	23543	broad.mit.edu	37	chr22	36177704	36177704	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaatattagagacatgCagccgtttcggggtagattt	12	5	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36177704	G	G	36177704	2	3	11	1	0	0	0	0	0	0	0	1	13255	697	25	4		4	RBM9	22	36177704	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	394684	36177704	15126862	1796	29963											
MYH9	4627	broad.mit.edu	37	chr22	36691697	36691697	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtcttcctggagttcagaGatctgagattccagctcccg	11	11	3	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36691697	T	T	36691697	2	4	11	1	0	0	0	0	0	0	0	1	10136	932	33	3		3	MYH9	22	36691697	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	513993	36691697	14612869	1797	29964											
KCTD17	79734	broad.mit.edu	37	chr22	37453354	37453354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctttgggtatgttgcggGggtggtggcagcaggtgctc	18	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37453354	T	T	37453354	1	4	11	0	1	0	0	0	0	0	0	0	8174	1247	43	2		2	KCTD17	22	37453354	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	761657	37453354	13851212	1798	29965											
RPL3	6122	broad.mit.edu	37	chr22	39714363	39714363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctacaatttccctccccCtccactcctattcccccaac	0	22	1	0	rs78882338		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39714363	T	T	39714363	1	4	11	0	1	0	0	0	0	0	0	0	13690	696	24	4		4	RPL3	22	39714363	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2261009	39714363	11590203	1799	29966											
RANGAP1	5905	broad.mit.edu	37	chr22	41657438	41657438	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcaggggcaggatggacaGaaaccactcaccctaaaagc	11	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41657438	A	A	41657438	1	1	11	0	1	0	0	0	0	0	0	0	13141	957	33	4		4	RANGAP1	22	41657438	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1943075	41657438	9647128	1800	29967											
ACO2	50	broad.mit.edu	37	chr22	41923336	41923336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcggagacgagaactacggCgagggctcgagccgggagca	17	10	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41923336	A	A	41923336	2	1	11	1	0	0	0	0	0	0	0	1	147	755	27	3		3	ACO2	22	41923336	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	265898	41923336	9381230	1801	29968											
SAMM50	25813	broad.mit.edu	37	chr22	44368651	44368651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagttagcatcttccttctGtttttatgaaagtcccttag	7	8	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44368651	T	T	44368651	1	4	11	0	1	0	0	0	0	0	0	0	13940	1392	48	3		3	SAMM50	22	44368651	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2445315	44368651	6935915	1802	29969											
SAMM50	25813	broad.mit.edu	37	chr22	44377228	44377228	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgatgttcctggagtgaaAggaatgctgggagaaaacaa	14	5	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44377228	G	G	44377228	1	3	11	0	1	0	0	0	0	0	0	0	13940	87	3	5		5	SAMM50	22	44377228	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	8577	44377228	6927338	1803	29970											
SAMM50	25813	broad.mit.edu	37	chr22	44392410	44392410	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaatgttaaagacacactcCgaggcagcgtggatgtggtt	12	7	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44392410	T	T	44392410	1	4	11	0	1	0	0	0	0	0	0	0	13940	666	23	4		4	SAMM50	22	44392410	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	15182	44392410	6912156	1804	29971											
TBC1D22A	25771	broad.mit.edu	37	chr22	47569087	47569087	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagttttctggggtcaccCgccctccaccgtgggtcacc	10	17	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47569087	T	T	47569087	1	4	11	0	1	0	0	0	0	0	0	0	15730	667	23	4		4	TBC1D22A	22	47569087	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	3176677	47569087	3735479	1805	29972											
TTLL8	164714	broad.mit.edu	37	chr22	50479757	50479757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtcctggtgggacaggCaacagagggcctgggcaccc	17	12	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50479757	T	T	50479757	1	4	11	0	1	0	0	0	0	0	0	0	16859	725	25	4		4	TTLL8	22	50479757	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2910670	50479757	824809	1806	29973											
MOV10L1	54456	broad.mit.edu	37	chr22	50546716	50546716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctctctgtgcttctggCagacctgccatcaggggtaa	11	13	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50546716	A	A	50546716	1	1	11	0	1	0	0	0	0	0	0	0	9813	725	25	3		3	MOV10L1	22	50546716	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	66959	50546716	757850	1807	29974											
HDAC10	83933	broad.mit.edu	37	chr22	50684601	50684601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctcccaatctcagggccCctggagtaggagcagggaga	13	12	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50684601	A	A	50684601	1	1	11	0	1	0	0	0	0	0	0	0	7072	638	22	2		2	HDAC10	22	50684601	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	137885	50684601	619965	1808	29975											
FAM116B	414918	broad.mit.edu	37	chr22	50752226	50752226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcgtccccagcccctgCcccacaaaccatataccttg	5	21	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50752226	A	A	50752226	1	1	11	0	1	0	0	0	0	0	0	0	5454	754	26	3		3	FAM116B	22	50752226	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	67625	50752226	552340	1809	29976											
MXRA5	25878	broad.mit.edu	37	chrX	3242297	3242297	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccactaggctcaatcattaCccagcttctgccccgagcct	6	17	3	0	rs149921437		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3242297	G	G	3242297	3	3	11	1	0	0	0	0	1	0	0	0	10097	507	18	4	7069	4	MXRA5	23	3242297	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08		3242297	152028263	1810	29977											
MXRA5	25878	broad.mit.edu	37	chrX	3248372	3248372	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttgttgtggtcaatgtgCagcctcattaagttagagag	11	6	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3248372	A	A	3248372	2	1	11	1	0	0	0	0	0	0	0	1	10097	697	25	3		3	MXRA5	23	3248372	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	6075	3248372	152022188	1811	29978											
NLGN4X	57502	broad.mit.edu	37	chrX	5821357	5821357	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgcaggtcggcggtggcCacggcgggggccacccactg	19	14	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5821357	G	G	5821357	2	3	11	1	0	0	0	0	0	0	0	1	10559	581	21	4		4	NLGN4X	23	5821357	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	2572985	5821357	149449203	1812	29979											
TBL1X	6907	broad.mit.edu	37	chrX	9656355	9656355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttcggtgggcctctctgGgttcattgttttcttcttgg	13	8	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9656355	T	T	9656355	1	4	11	0	1	0	0	0	0	0	0	0	15761	1247	43	2		2	TBL1X	23	9656355	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	3834998	9656355	145614205	1813	29980											
TLR7	51284	broad.mit.edu	37	chrX	12904107	12904107	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccttgaggccaacaacatCttttccatcagaaaagagaa	7	10	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12904107	T	T	12904107	2	4	11	1	0	0	0	0	0	0	0	1	16079	903	32	4		4	TLR7	23	12904107	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	3247752	12904107	142366453	1814	29981											
FAM9C	171484	broad.mit.edu	37	chrX	13061929	13061929	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgcccttcctgcccaCgggctccgtggctgactggc	12	18	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13061929	T	T	13061929	1	4	11	1	0	0	0	0	0	0	0	0	5718	551	19	4		4	FAM9C	23	13061929	Translation_Start_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	157822	13061929	142208631	1815	29982											
GRPR	2925	broad.mit.edu	37	chrX	16170416	16170416	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttgccaagacagtgctggTgtttgtgggcctgttcgcct	13	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16170416	A	A	16170416	3	1	11	1	0	0	0	0	1	0	0	0	6874	1696	59	5	813	5	GRPR	23	16170416	Missense_Mutation	SNP	T	TCGA-05-4398-01A-01D-1265-08	3108487	16170416	139100144	1816	29983											
BEND2	139105	broad.mit.edu	37	chrX	18192350	18192350	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccgatgcaacacggttgGtacgttttttatttttgcga	10	7	0	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18192350	A	A	18192350	3	1	11	1	0	0	0	0	1	0	0	0	1403	1261	44	4	656	4	BEND2	23	18192350	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2021934	18192350	137078210	1817	29984											
PDHA1	5160	broad.mit.edu	37	chrX	19375914	19375914	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaagcaacacatttcagTatttgcttttggagctagat	8	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19375914	C	C	19375914	1	2	11	0	1	0	0	0	0	0	0	0	11758	1653	57	5		5	PDHA1	23	19375914	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1183564	19375914	135894646	1818	29985											
PDK3	5165	broad.mit.edu	37	chrX	24512948	24512948	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacaatgagagaagttaatCttctgccggataatttactt	7	7	2	2	rs112864206		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24512948	T	T	24512948	3	4	11	1	0	0	0	0	1	0	0	0	11771	913	32	4	202	4	PDK3	23	24512948	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5137034	24512948	130757612	1819	29986											
GK	2710	broad.mit.edu	37	chrX	30714350	30714350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaatattttcagatgtcaGtggagcaccaaaatttaact	6	7	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30714350	A	A	30714350	1	1	11	0	1	0	0	0	0	0	0	0	6484	1044	36	4		4	GK	23	30714350	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	6201402	30714350	124556210	1820	29987											
DMD	1756	broad.mit.edu	37	chrX	32662374	32662374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccaatcagcttacttccCaattgtagaatattaccaac	4	11	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32662374	A	A	32662374	3	1	11	1	0	0	0	0	1	0	0	0	4620	593	21	2	10370	2	DMD	23	32662374	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	1948024	32662374	122608186	1821	29988											
DMD	1756	broad.mit.edu	37	chrX	32868006	32868006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacattttcacgattatccCcttttgaaaactaaagctat	3	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32868006	A	A	32868006	1	1	11	0	1	0	0	0	0	0	0	0	4620	638	22	2		2	DMD	23	32868006	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	205632	32868006	122402554	1822	29989											
FAM47B	170062	broad.mit.edu	37	chrX	34961437	34961437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagctggaggacgcttgGgctcgttgtgaggcccggga	19	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961437	T	T	34961437	3	4	11	1	0	0	0	0	1	0	0	0	5621	1241	43	2	491	2	FAM47B	23	34961437	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	2093431	34961437	120309123	1823	29990											
CXorf59	286464	broad.mit.edu	37	chrX	36163104	36163104	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctattggcttctgtcattctGcagtttgtagccagcctact	8	11	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36163104	A	A	36163104	1	1	11	0	1	0	0	0	0	0	0	0	4148	1334	46	4		4	CXorf59	23	36163104	3'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	1201667	36163104	119107456	1824	29991											
FAM47C	442444	broad.mit.edu	37	chrX	37027551	37027551	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtcccatctctgcccGgaacctccagagactcgcgt	11	15	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37027551	A	A	37027551	2	1	11	1	0	0	0	0	0	0	0	1	5622	1103	39	4		4	FAM47C	23	37027551	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	864447	37027551	118243009	1825	29992											
OTC	5009	broad.mit.edu	37	chrX	38280369	38280369	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaagaaagaagcaatgttCttcagtaacagaatgagttg	10	5	3	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38280369	T	T	38280369	1	4	11	0	1	0	0	0	0	0	0	0	11395	928	32	4		4	OTC	23	38280369	3'UTR	SNP	C	TCGA-05-4398-01A-01D-1265-08	1252818	38280369	116990191	1826	29993											
WDR13	64743	broad.mit.edu	37	chrX	48458941	48458941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggatggtcgctgcatccGagagatccctgaccccgata	12	12	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48458941	T	T	48458941	3	4	11	1	0	0	0	0	1	0	0	0	17402	1058	37	3	776	3	WDR13	23	48458941	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	10178572	48458941	106811619	1827	29994											
PRICKLE3	4007	broad.mit.edu	37	chrX	49035627	49035627	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagatggccccagtgatggtCaccgggaagatgcgcacgat	14	11	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49035627	T	T	49035627	2	4	11	1	0	0	0	0	0	0	0	1	12594	813	29	4		4	PRICKLE3	23	49035627	Silent	SNP	C	TCGA-05-4398-01A-01D-1265-08	576686	49035627	106234933	1828	29995											
CACNA1F	778	broad.mit.edu	37	chrX	49074177	49074177	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaaagtctttgggaggggtCctgagctccgtggacggcag	16	9	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49074177	A	A	49074177	1	1	11	0	1	0	0	0	0	0	0	0	2569	870	30	3		3	CACNA1F	23	49074177	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	38550	49074177	106196383	1829	29996											
AKAP4	8852	broad.mit.edu	37	chrX	49957633	49957633	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgagtactctgagccatAtagcccatggtggaaccagg	11	9	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49957633	G	G	49957633	2	3	11	1	0	0	0	0	0	0	0	1	453	456	16	5		5	AKAP4	23	49957633	Silent	SNP	A	TCGA-05-4398-01A-01D-1265-08	883456	49957633	105312927	1830	29997											
HUWE1	10075	broad.mit.edu	37	chrX	53576030	53576030	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcttctcggtatgtttacGcccccctgaacgctggatct	9	13	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53576030	A	A	53576030	3	1	11	1	0	0	0	0	1	0	0	0	7531	1087	38	4	3271	4	HUWE1	23	53576030	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	3618397	53576030	101694530	1831	29998											
HUWE1	10075	broad.mit.edu	37	chrX	53619354	53619354	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagtgtgaggccagtaccCtacctgttgcagttgttgct	13	9	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53619354	G	G	53619354	1	3	11	0	1	0	0	0	0	0	0	0	7531	696	24	4		4	HUWE1	23	53619354	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	43324	53619354	101651206	1832	29999											
TRO	7216	broad.mit.edu	37	chrX	54954144	54954144	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacagcagaccacctgaatAtgagttcttctggggcttgc	10	10	2	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54954144	G	G	54954144	3	3	11	1	0	0	0	0	1	0	0	0	16699	449	16	5	1846	5	TRO	23	54954144	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	1334790	54954144	100316416	1833	30000											
USP51	158880	broad.mit.edu	37	chrX	55514858	55514858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgccaggatcccccgacCcgtctaggtcaccagagcag	11	17	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55514858	A	A	55514858	3	1	11	1	0	0	0	0	1	0	0	0	17210	623	22	2	1624	2	USP51	23	55514858	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	560714	55514858	99755702	1834	30001											
FAM123B	139285	broad.mit.edu	37	chrX	63406053	63406053	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcagtacctgggcatcTtctgctgtccctatcatggg	10	12	5	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63406053	C	C	63406053	1	2	11	0	1	0	0	0	0	0	0	0	5469	1624	56	5		5	FAM123B	23	63406053	3'UTR	SNP	T	TCGA-05-4398-01A-01D-1265-08	7891195	63406053	91864507	1835	30002											
HEPH	9843	broad.mit.edu	37	chrX	65409587	65409587	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtgcacagaaacgtgtGgcctggcacttgtttggcat	13	8	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65409587	T	T	65409587	2	4	11	1	0	0	0	0	0	0	0	1	7121	1335	47	2		2	HEPH	23	65409587	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	2003534	65409587	89860973	1836	30003											
HEPH	9843	broad.mit.edu	37	chrX	65423337	65423337	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctgcaagaatctactatAtcatggcagaagaagtagag	10	6	2	4			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65423337	G	G	65423337	3	3	11	1	0	0	0	0	1	0	0	0	7121	449	16	5	2421	5	HEPH	23	65423337	Missense_Mutation	SNP	A	TCGA-05-4398-01A-01D-1265-08	13750	65423337	89847223	1837	30004											
RAB41	347517	broad.mit.edu	37	chrX	69502146	69502146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgaaagaacggaatacCagtctctgtgcaaatctaaa	8	10	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69502146	A	A	69502146	3	1	11	1	0	0	0	0	1	0	0	0	13051	595	21	2	81	2	RAB41	23	69502146	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	4078809	69502146	85768414	1838	30005											
SNX12	29934	broad.mit.edu	37	chrX	70280996	70280996	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccaggatggttatcagTagtattcagaatcagagaga	11	5	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70280996	A	A	70280996	1	1	11	0	1	0	0	0	0	0	0	0	14997	1653	57	5		5	SNX12	23	70280996	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	778850	70280996	84989564	1839	30006											
MED12	9968	broad.mit.edu	37	chrX	70348686	70348686	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcggctccctggccttcctCagaaggccagtcctttggta	11	14	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70348686	T	T	70348686	1	4	11	0	1	0	0	0	0	0	0	0	9521	841	29	4		4	MED12	23	70348686	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	67690	70348686	84921874	1840	30007											
MAGEE1	57692	broad.mit.edu	37	chrX	75649135	75649135	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtgagggaccgagcacctCcgtgctgcccgccgcctctg	14	16	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75649135	T	T	75649135	3	4	11	1	0	0	0	0	1	0	0	0	9277	855	30	4	814	4	MAGEE1	23	75649135	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5300449	75649135	79621425	1841	30008											
POF1B	79983	broad.mit.edu	37	chrX	84563165	84563165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgtccaagctcctcccGtatgttgctaaatgtggaca	9	10	0	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84563165	T	T	84563165	2	4	11	1	0	0	0	0	0	0	0	1	12277	1144	40	3		3	POF1B	23	84563165	Silent	SNP	G	TCGA-05-4398-01A-01D-1265-08	8914030	84563165	70707395	1842	30009											
KLHL4	56062	broad.mit.edu	37	chrX	86877207	86877207	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtagatgacctttcttttCtaggaacacttcattgaggt	8	7	3	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86877207	A	A	86877207	1	1	11	0	1	0	0	0	0	0	0	0	8462	928	32	3		3	KLHL4	23	86877207	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	2314042	86877207	68393353	1843	30010											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177383	89177383	+	Frame_Shift_Del	DEL	G	-	-													tttgttgcagatttctaactGgtttatcaatgctcgcagac							TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89177383	-	-	89177383	7	5	11	1	0	1	0	1	0	0	0	0	15950	1357	47	0	301	0	TGIF2LX	23	89177383	Frame_Shift_Del	DEL	G	TCGA-05-4398-01A-01D-1265-08	2300176	89177383	66093177	1844	30011											
PCDH11X	27328	broad.mit.edu	37	chrX	91368232	91368232	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggctggggctgggtggcagGacagcccctcagatgaggtc	18	10	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91368232	A	A	91368232	1	1	11	0	1	0	0	0	0	0	0	0	11602	1189	41	4		4	PCDH11X	23	91368232	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	2190849	91368232	63902328	1845	30012											
PCDH19	57526	broad.mit.edu	37	chrX	99605778	99605778	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaactgccctacttagaagGaatttttcttctgggtcaag	9	9	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99605778	T	T	99605778	1	4	11	0	1	0	0	0	0	0	0	0	11608	1189	41	3		3	PCDH19	23	99605778	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	8237546	99605778	55664782	1846	30013											
GLA	2717	broad.mit.edu	37	chrX	100656609	100656609	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggctaaatctctggaaTgaaacattaccatctgccaa	7	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100656609	C	C	100656609	1	2	11	0	1	0	0	0	0	0	0	0	6490	1479	51	5		5	GLA	23	100656609	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	1050831	100656609	54613951	1847	30014											
NXF5	55998	broad.mit.edu	37	chrX	101092312	101092312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagaattctgggaaggagCccagccagtgggagggagca	19	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101092312	A	A	101092312	1	1	11	0	1	0	0	0	0	0	0	0	10881	754	26	3		3	NXF5	23	101092312	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	435703	101092312	54178248	1848	30015											
GPRASP2	114928	broad.mit.edu	37	chrX	101969999	101969999	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcccaaaactgaggcccaaGcaatgtctggggcaaggccc	13	13	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101969999	C	C	101969999	3	2	11	1	0	0	0	0	1	0	0	0	6789	971	34	4	204	4	GPRASP2	23	101969999	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	877687	101969999	53300561	1849	30016											
RGAG1	57529	broad.mit.edu	37	chrX	109695410	109695410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacggcaacagcctctgaaaCaatgtccatgccacaattga	7	12	1	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109695410	A	A	109695410	3	1	11	1	0	0	0	0	1	0	0	0	13382	478	17	3	1567	3	RGAG1	23	109695410	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	7725411	109695410	45575150	1850	30017											
KIAA1210	57481	broad.mit.edu	37	chrX	118228100	118228100	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgacaacaatcatgccctCggccatattgggattctccg	8	14	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118228100	T	T	118228100	1	4	11	0	1	0	0	0	0	0	0	0	8284	899	31	4		4	KIAA1210	23	118228100	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	8532690	118228100	37042460	1851	30018											
UBE2A	7319	broad.mit.edu	37	chrX	118716549	118716549	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacctacttctttgttcttAgtctatgcagatggtagtat	8	7	3	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118716549	T	T	118716549	5	4	11	1	0	0	0	0	0	0	1	0	16970	434	15	5	258	5	UBE2A	23	118716549	Splice_Site	SNP	A	TCGA-05-4398-01A-01D-1265-08	488449	118716549	36554011	1852	30019											
ODZ1	10178	broad.mit.edu	37	chrX	123517813	123517813	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtacctgtattatcacagGctacataatattcttcacca	6	10	3	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123517813	A	A	123517813	3	1	11	1	0	0	0	0	1	0	0	0	10929	1203	42	4	1242	4	ODZ1	23	123517813	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4801264	123517813	31752747	1853	30020											
IGSF1	3547	broad.mit.edu	37	chrX	130413205	130413205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccaccgggacttcacccCggccttctgcccggggcccc	10	23	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130413205	A	A	130413205	1	1	11	0	1	0	0	0	0	0	0	0	7666	667	23	1		1	IGSF1	23	130413205	Intron	SNP	C	TCGA-05-4398-01A-01D-1265-08	6895392	130413205	24857355	1854	30021											
FAM122B	159090	broad.mit.edu	37	chrX	133923049	133923049	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagtgtgcgaaaaaattaaTgaacctagtgaacaacataa	8	5	0	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133923049	A	A	133923049	1	1	11	0	1	0	0	0	0	0	0	0	5466	1479	51	5		5	FAM122B	23	133923049	Intron	SNP	T	TCGA-05-4398-01A-01D-1265-08	3509844	133923049	21347511	1855	30022											
FAM122B	159090	broad.mit.edu	37	chrX	133923194	133923194	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaacaaagggaagggccGtcagtgtttacaaacaagac	10	7	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133923194	A	A	133923194	1	1	11	0	1	0	0	0	0	0	0	0	5466	1160	40	4		4	FAM122B	23	133923194	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	145	133923194	21347366	1856	30023											
SAGE1	55511	broad.mit.edu	37	chrX	134988005	134988005	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtgtcatgcagggaagAaggtggtttcgttttattat	13	4	1	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134988005	T	T	134988005	1	4	11	0	1	0	0	0	0	0	0	0	13920	261	9	5		5	SAGE1	23	134988005	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1064811	134988005	20282555	1857	30024											
SLC9A6	10479	broad.mit.edu	37	chrX	135084373	135084373	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgccatagtgctgtcctcGtaagtgtttgttttcttatt	9	7	1	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135084373	T	T	135084373	5	4	11	1	0	0	0	0	0	0	1	0	14832	1159	40	3	922	3	SLC9A6	23	135084373	Splice_Site	SNP	G	TCGA-05-4398-01A-01D-1265-08	96368	135084373	20186187	1858	30025											
ARHGEF6	9459	broad.mit.edu	37	chrX	135825841	135825841	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcttcaactcgtgtgacGtaaatgatgtcccccttaca	6	13	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135825841	T	T	135825841	4	4	11	1	0	0	0	0	0	1	0	0	912	1140	40	3	1838	3	ARHGEF6	23	135825841	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	741468	135825841	19444719	1859	30026											
F9	2158	broad.mit.edu	37	chrX	138612909	138612909	+	Translation_Start_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaccttaccactttcacaatCtgctagcaaaggttatgcag	7	11	2	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138612909	G	G	138612909	1	3	11	1	0	0	0	0	0	0	0	0	5397	928	32	4		4	F9	23	138612909	Translation_Start_Site	SNP	C	TCGA-05-4398-01A-01D-1265-08	2787068	138612909	16657651	1860	30027											
F9	2158	broad.mit.edu	37	chrX	138612921	138612921	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacaatctgctagcaaagGttatgcagcgcgtgaacatg	10	9	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138612921	T	T	138612921	1	4	11	0	1	0	0	0	0	0	0	0	5397	1276	44	3		3	F9	23	138612921	5'UTR	SNP	G	TCGA-05-4398-01A-01D-1265-08	12	138612921	16657639	1861	30028											
SLITRK4	139065	broad.mit.edu	37	chrX	142718399	142718399	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggtcaaagatgcgaatcGgaaaatattatcaggaagga	12	4	2	1			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142718399	A	A	142718399	4	1	11	1	0	0	0	0	0	1	0	0	14859	1124	39	4	1991	4	SLITRK4	23	142718399	Nonsense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	4105478	142718399	12552161	1862	30029											
AFF2	2334	broad.mit.edu	37	chrX	147919180	147919180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcattaggagatgaccCattcctggcctactcctctc	6	15	2	2			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147919180	A	A	147919180	3	1	11	1	0	0	0	0	1	0	0	0	357	594	21	2	1169	2	AFF2	23	147919180	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	5200781	147919180	7351380	1863	30030											
MAMLD1	10046	broad.mit.edu	37	chrX	149671454	149671454	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataaccacaacacccagatGacccagctagacactcaggg	7	14	1	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149671454	T	T	149671454	1	4	11	0	1	0	0	0	0	0	0	0	9300	1305	45	3		3	MAMLD1	23	149671454	Intron	SNP	G	TCGA-05-4398-01A-01D-1265-08	1752274	149671454	5599106	1864	30031											
GPR50	9248	broad.mit.edu	37	chrX	150348995	150348995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcttccatgctatgcggCaccctatcatattcttctct	4	15	4	0			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150348995	A	A	150348995	3	1	11	1	0	0	0	0	1	0	0	0	6762	710	25	3	946	3	GPR50	23	150348995	Missense_Mutation	SNP	C	TCGA-05-4398-01A-01D-1265-08	677541	150348995	4921565	1865	30032											
GABRA3	2556	broad.mit.edu	37	chrX	151560648	151560648	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaaacacagagcacaggaAcaaatggctttggtccagaa	10	8	0	3			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151560648	C	C	151560648	1	2	11	0	1	0	0	0	0	0	0	0	6222	58	2	5		5	GABRA3	23	151560648	Intron	SNP	A	TCGA-05-4398-01A-01D-1265-08	1211653	151560648	3709912	1866	30033											
PLXNB3	5365	broad.mit.edu	37	chrX	153039513	153039513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccgcgaggggcctgcccGcccctaccgcctcaagccag	12	20	1	0	rs146891755	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153039513	T	T	153039513	3	4	11	1	0	0	0	0	1	0	0	0	12220	1087	38	3	3671	3	PLXNB3	23	153039513	Missense_Mutation	SNP	G	TCGA-05-4398-01A-01D-1265-08	1478865	153039513	2231047	1867	30034											
AGRN	375790	broad.mit.edu	37	chr1	957543	957543	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtctagccccttccccagGagaggactaatgacacctac	8	15	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	957543	A	A	957543	1	1	12	0	1	0	0	0	0	0	0	0	397	1189	41	4		4	AGRN	1	957543	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08		957543	248293078	1	30035											
PER3	8863	broad.mit.edu	37	chr1	7889988	7889988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggagaatccatcccatcCtactgccagcgctctgtcca	8	16	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7889988	A	A	7889988	3	1	12	1	0	0	0	0	1	0	0	0	11825	681	24	2	3024	2	PER3	1	7889988	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	6932445	7889988	241360633	2	30036											
LOC440563	440563	broad.mit.edu	37	chr1	13183170	13183170	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcagactccatctttacatGagtctcatctttcttcatgg	5	12	6	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13183170	C	C	13183170	3	2	12	1	0	0	0	0	1	0	0	0	8962	1290	45	4	182	4	LOC440563	1	13183170	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	5293182	13183170	236067451	3	30037											
UBR4	23352	broad.mit.edu	37	chr1	19401370	19401370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcaggaagctctctggatCggtgatttctgataaaagac	10	8	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19401370	A	A	19401370	3	1	12	1	0	0	0	0	1	0	0	0	17030	884	31	3	47	3	UBR4	1	19401370	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	6218200	19401370	229849251	4	30038											
GNL2	29889	broad.mit.edu	37	chr1	38048524	38048524	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacttgaactacaacatctGatgaatctatcacctgaaaa	5	9	3	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38048524	C	C	38048524	4	2	12	1	0	0	0	0	0	1	0	0	6600	1294	45	4	1585	4	GNL2	1	38048524	Nonsense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	18647154	38048524	211202097	5	30039											
FHL3	2275	broad.mit.edu	37	chr1	38463709	38463709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagtgagcacccttgtcggGcacaaaagaacgggagccca	13	11	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38463709	A	A	38463709	3	1	12	1	0	0	0	0	1	0	0	0	5937	1203	42	4	427	4	FHL3	1	38463709	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	415185	38463709	210786912	6	30040											
AKIRIN1	79647	broad.mit.edu	37	chr1	39466619	39466619	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaccaccgcacctggccCaaactcactttttcttttgg	7	14	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39466619	G	G	39466619	1	3	12	0	1	0	0	0	0	0	0	0	461	609	21	4		4	AKIRIN1	1	39466619	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1002910	39466619	209784002	7	30041											
RLF	6018	broad.mit.edu	37	chr1	40701980	40701980	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatcagcataaggagaaaAgagacaaaaaacctattggc	9	7	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40701980	G	G	40701980	3	3	12	1	0	0	0	0	1	0	0	0	13500	64	3	5	1636	5	RLF	1	40701980	Missense_Mutation	SNP	A	TCGA-05-4402-01A-01D-1265-08	1235361	40701980	208548641	8	30042											
FOXJ3	22887	broad.mit.edu	37	chr1	42744180	42744180	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctttgtgctgttggacttCttcctggtccagagttgtat	10	8	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42744180	G	G	42744180	3	3	12	1	0	0	0	0	1	0	0	0	6073	922	32	4	1704	4	FOXJ3	1	42744180	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	2042200	42744180	206506441	9	30043											
LEPRE1	64175	broad.mit.edu	37	chr1	43215957	43215957	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccgcaccttctccgtcacGttgtagtacaggtgggcact	11	14	2	0	rs140334418		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43215957	A	A	43215957	2	1	12	1	0	0	0	0	0	0	0	1	8801	1136	40	4		4	LEPRE1	1	43215957	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	471777	43215957	206034664	10	30044											
ZNF691	51058	broad.mit.edu	37	chr1	43316857	43316857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccccattgctcatccaagGcatgaggcagatgagaagcc	11	12	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43316857	T	T	43316857	3	4	12	1	0	0	0	0	1	0	0	0	18223	1194	42	3	230	3	ZNF691	1	43316857	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	100900	43316857	205933764	11	30045											
ELOVL1	64834	broad.mit.edu	37	chr1	43830184	43830184	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagcctctggtgcccacCctttcccatagtggccttca	8	17	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43830184	T	T	43830184	1	4	12	0	1	0	0	0	0	0	0	0	5115	638	22	4		4	ELOVL1	1	43830184	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	513327	43830184	205420437	12	30046											
CPT2	1376	broad.mit.edu	37	chr1	53676597	53676597	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acggtgcagaaactcaacttCgagctgactgatgccttaaa	9	10	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53676597	T	T	53676597	2	4	12	1	0	0	0	0	0	0	0	1	3866	883	31	4		4	CPT2	1	53676597	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	9846413	53676597	195574024	13	30047											
DAB1	1600	broad.mit.edu	37	chr1	58521834	58521834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggtgggggacgtggggCagcacccgcaggtctaaatc	16	10	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58521834	A	A	58521834	1	1	12	0	1	0	0	0	0	0	0	0	4250	725	25	3		3	DAB1	1	58521834	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	4845237	58521834	190728787	14	30048											
C1orf87	127795	broad.mit.edu	37	chr1	60499392	60499392	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctttcctactacatttctCaactttgctacacactatgg	4	12	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60499392	T	T	60499392	1	4	12	0	1	0	0	0	0	0	0	0	2086	841	29	4		4	C1orf87	1	60499392	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1977558	60499392	188751229	15	30049											
LPHN2	23266	broad.mit.edu	37	chr1	82456080	82456080	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcttctgtttcaggacatTcactgaacaatgccagggat	8	11	4	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82456080	C	C	82456080	3	2	12	1	0	0	0	0	1	0	0	0	9003	1783	62	5	3537	5	LPHN2	1	82456080	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	21956688	82456080	166794541	16	30050											
ARHGAP29	9411	broad.mit.edu	37	chr1	94639514	94639514	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacattggattcacatcagGcaagccaagctcctcagagt	8	12	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94639514	C	C	94639514	3	2	12	1	0	0	0	0	1	0	0	0	880	1203	42	4	92	4	ARHGAP29	1	94639514	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	12183434	94639514	154611107	17	30051											
LRRC39	127495	broad.mit.edu	37	chr1	100626008	100626008	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgtggaaaatcaaatattCtataaaagcttaccttccat	4	7	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100626008	T	T	100626008	1	4	12	0	1	0	0	0	0	0	0	0	9082	928	32	4		4	LRRC39	1	100626008	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	5986494	100626008	148624613	18	30052											
COL11A1	1301	broad.mit.edu	37	chr1	103348790	103348790	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctggataaatgcaagtctCaccaccagatgtgaaattac	8	9	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103348790	T	T	103348790	3	4	12	1	0	0	0	0	1	0	0	0	3699	835	29	4	500	4	COL11A1	1	103348790	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	2722782	103348790	145901831	19	30053											
WDR47	22911	broad.mit.edu	37	chr1	109524336	109524336	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtttttttcccatatatatCatttaaagaaaaacctacca	2	8	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109524336	G	G	109524336	1	3	12	0	1	0	0	0	0	0	0	0	17427	841	29	4		4	WDR47	1	109524336	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	6175546	109524336	139726285	20	30054			1	28		3	3	991	C		5.931759e-05
WDR47	22911	broad.mit.edu	37	chr1	109525147	109525147	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtaagagcaagaccctgtCtcttagaaaagaaaatgcag	9	8	1	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109525147	G	G	109525147	1	3	12	0	1	0	0	0	0	0	0	0	17427	928	32	4		4	WDR47	1	109525147	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	811	109525147	139725474	21	30055			1	28		3	3	991	C		5.931759e-05
WDR47	22911	broad.mit.edu	37	chr1	109525326	109525326	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagcacttattaaaatagctCctccgctttctgggccttcc	6	14	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109525326	G	G	109525326	3	3	12	1	0	0	0	0	1	0	0	0	17427	855	30	4	604	4	WDR47	1	109525326	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	179	109525326	139725295	22	30056			1	28		3	3	991	C		5.931759e-05
CD53	963	broad.mit.edu	37	chr1	111434033	111434033	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaagaatatcacggcatGggcatgagtagcttgaaact	13	7	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111434033	A	A	111434033	3	1	12	1	0	0	0	0	1	0	0	0	3053	1348	47	4	5	4	CD53	1	111434033	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1908707	111434033	137816588	23	30057											
PPM1J	333926	broad.mit.edu	37	chr1	113253279	113253279	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgaggtgtggggtttgctGgacagggagcttggagataa	18	3	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113253279	A	A	113253279	1	1	12	0	1	0	0	0	0	0	0	0	12443	1363	47	4		4	PPM1J	1	113253279	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	1819246	113253279	135997342	24	30058											
HIPK1	204851	broad.mit.edu	37	chr1	114483059	114483059	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagtgtcgtcgagtgccttCtgcagtgcgaagaaactgaa	12	9	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114483059	G	G	114483059	3	3	12	1	0	0	0	0	1	0	0	0	7183	912	32	4	56	4	HIPK1	1	114483059	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	1229780	114483059	134767562	25	30059											
SYT6	148281	broad.mit.edu	37	chr1	114682520	114682520	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcttccaaaagagaaagaGaaaaactgccaccagggcca	9	11	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114682520	C	C	114682520	1	2	12	0	1	0	0	0	0	0	0	0	15597	957	33	4		4	SYT6	1	114682520	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	199461	114682520	134568101	26	30060											
CSDE1	7812	broad.mit.edu	37	chr1	115273174	115273174	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgcaatatggagctggttCccatccagaatttcactgaa	8	10	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115273174	T	T	115273174	2	4	12	1	0	0	0	0	0	0	0	1	3963	842	30	4		4	CSDE1	1	115273174	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	590654	115273174	133977447	27	30061											
APH1A	51107	broad.mit.edu	37	chr1	150239100	150239100	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagagattagattctccctCgacctaatccccatattctc	4	13	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150239100	T	T	150239100	1	4	12	0	1	0	0	0	0	0	0	0	773	899	31	4		4	APH1A	1	150239100	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	34965926	150239100	99011521	28	30062											
VPS72	6944	broad.mit.edu	37	chr1	151162737	151162737	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaagtaacagagtgtcgaGagactcccagtcccaccctc	9	14	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151162737	C	C	151162737	1	2	12	0	1	0	0	0	0	0	0	0	17344	957	33	4		4	VPS72	1	151162737	5'Flank	SNP	G	TCGA-05-4402-01A-01D-1265-08	923637	151162737	98087884	29	30063											
PIP5K1A	8394	broad.mit.edu	37	chr1	151199726	151199726	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttcagtttattttgttttGatgtaccattgtggtagcta	9	4	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151199726	C	C	151199726	1	2	12	0	1	0	0	0	0	0	0	0	12034	1305	45	4		4	PIP5K1A	1	151199726	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	36989	151199726	98050895	30	30064											
INTS3	65123	broad.mit.edu	37	chr1	153745528	153745528	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacacagccccccaatgccGaagaagagtcgggctccagc	10	17	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153745528	A	A	153745528	3	1	12	1	0	0	0	0	1	0	0	0	7849	1059	37	4	3136	4	INTS3	1	153745528	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	2545802	153745528	95505093	31	30065											
CRTC2	200186	broad.mit.edu	37	chr1	153927294	153927294	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgcttcctatgagtccctGaggaaccccatcccactacc	7	16	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153927294	C	C	153927294	1	2	12	0	1	0	0	0	0	0	0	0	3932	1305	45	4		4	CRTC2	1	153927294	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	181766	153927294	95323327	32	30066											
ADAM15	8751	broad.mit.edu	37	chr1	155029447	155029447	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaccactccaccagcatcCtgggagtcgcctcctccata	8	17	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155029447	T	T	155029447	2	4	12	1	0	0	0	0	0	0	0	1	237	680	24	4		4	ADAM15	1	155029447	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	1102153	155029447	94221174	33	30067											
GBA	2629	broad.mit.edu	37	chr1	155207965	155207965	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctggtggtagatgtctcCgggctgtcccttgagtgacc	15	10	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155207965	T	T	155207965	3	4	12	1	0	0	0	0	1	0	0	0	6328	661	23	4	913	4	GBA	1	155207965	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	178518	155207965	94042656	34	30068											
SPTA1	6708	broad.mit.edu	37	chr1	158587342	158587342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttactttatttgcttccagCtgagattccagagttcctgt	7	10	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158587342	A	A	158587342	3	1	12	1	0	0	0	0	1	0	0	0	15234	796	28	3	698	3	SPTA1	1	158587342	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	3379377	158587342	90663279	35	30069											
CRP	1401	broad.mit.edu	37	chr1	159683874	159683874	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgttaacggtgctttgaggGatacataggaagtatccgac	12	7	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159683874	A	A	159683874	3	1	12	1	0	0	0	0	1	0	0	0	3927	1174	41	4	562	4	CRP	1	159683874	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1096532	159683874	89566747	36	30070											
SH2D1B	117157	broad.mit.edu	37	chr1	162381712	162381712	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctggtatcgactcgctgTctcttaaaagaaagttgcca	8	11	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162381712	C	C	162381712	3	2	12	1	0	0	0	0	1	0	0	0	14344	1667	58	5	319	5	SH2D1B	1	162381712	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	2697838	162381712	86868909	37	30071											
CD247	919	broad.mit.edu	37	chr1	167489117	167489117	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaggatatcttctactgtgGaaaactgtgggctacaaatc	10	7	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167489117	A	A	167489117	1	1	12	0	1	0	0	0	0	0	0	0	3018	1189	41	4		4	CD247	1	167489117	5'Flank	SNP	G	TCGA-05-4402-01A-01D-1265-08	5107405	167489117	81761504	38	30072											
BAT2L2	23215	broad.mit.edu	37	chr1	171511180	171511180	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgacttgaatgcacaaacAgttgtaaaggttggagagaa	12	5	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171511180	G	G	171511180	2	3	12	1	0	0	0	0	0	0	0	1	1326	175	7	5		5	BAT2L2	1	171511180	Silent	SNP	A	TCGA-05-4402-01A-01D-1265-08	4022063	171511180	77739441	39	30073											
BAT2L2	23215	broad.mit.edu	37	chr1	171530077	171530077	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaatagctacacagtaggaGattaaggaaagggttaaatg	12	3	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171530077	A	A	171530077	1	1	12	0	1	0	0	0	0	0	0	0	1326	957	33	4		4	BAT2L2	1	171530077	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	18897	171530077	77720544	40	30074											
ASTN1	460	broad.mit.edu	37	chr1	176926734	176926734	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacagcacatttttccctAtgtatctgtattgtgtcttc	5	10	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176926734	G	G	176926734	1	3	12	0	1	0	0	0	0	0	0	0	1068	464	16	5		5	ASTN1	1	176926734	Intron	SNP	A	TCGA-05-4402-01A-01D-1265-08	5396657	176926734	72323887	41	30075											
LAMC2	3918	broad.mit.edu	37	chr1	183208591	183208591	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaggtttcagatgccagtGacaagacccagcaagcagaa	11	9	1	5			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183208591	C	C	183208591	3	2	12	1	0	0	0	0	1	0	0	0	8687	1290	45	4	3040	4	LAMC2	1	183208591	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	6281857	183208591	66042030	42	30076											
KIF21B	23046	broad.mit.edu	37	chr1	200972738	200972738	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatactccatcagctccatCtgcagccgagcaatctcagc	6	15	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200972738	T	T	200972738	2	4	12	1	0	0	0	0	0	0	0	1	8359	912	32	4		4	KIF21B	1	200972738	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	17764147	200972738	48277883	43	30077											
PTPN14	5784	broad.mit.edu	37	chr1	214568247	214568247	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctgttgtgcttaccgtgtGaaagagggcagtctcttctt	12	8	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214568247	A	A	214568247	3	1	12	1	0	0	0	0	1	0	0	0	12889	1290	45	4	2766	4	PTPN14	1	214568247	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	13595509	214568247	34682374	44	30078											
PTPN14	5784	broad.mit.edu	37	chr1	214568286	214568286	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgttgatgagctccactaGaatggtcgacttgttatgag	11	6	0	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214568286	A	A	214568286	2	1	12	1	0	0	0	0	0	0	0	1	12889	933	33	4		4	PTPN14	1	214568286	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	39	214568286	34682335	45	30079											
WDR26	80232	broad.mit.edu	37	chr1	224592297	224592297	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggaaaataaacaattcaGttaacccctatcactaaagt	6	8	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224592297	C	C	224592297	1	2	12	0	1	0	0	0	0	0	0	0	17410	1044	36	4		4	WDR26	1	224592297	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	10024011	224592297	24658324	46	30080											
EDARADD	128178	broad.mit.edu	37	chr1	236647288	236647288	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtacatctcacctgactGtctggctgacctgtacaagt	9	12	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236647288	C	C	236647288	1	2	12	0	1	0	0	0	0	0	0	0	4946	1392	48	4		4	EDARADD	1	236647288	3'UTR	SNP	G	TCGA-05-4402-01A-01D-1265-08	12054991	236647288	12603333	47	30081											
RYR2	6262	broad.mit.edu	37	chr1	237765273	237765273	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttataaagaaaaactttttCccttgtcttgtttcattact	4	7	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237765273	G	G	237765273	1	3	12	0	1	0	0	0	0	0	0	0	13880	870	30	4		4	RYR2	1	237765273	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1117985	237765273	11485348	48	30082											
WDR64	128025	broad.mit.edu	37	chr1	241958535	241958535	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agatatcccttggaaggtttCgtgactgaaaacagagaggc	12	7	0	4	rs150522021		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241958535	T	T	241958535	2	4	12	1	0	0	0	0	0	0	0	1	17442	883	31	4		4	WDR64	1	241958535	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	4193262	241958535	7292086	49	30083											
OR2L13	284521	broad.mit.edu	37	chr1	248166561	248166561	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctaattggaaacctatcCatgattcttctcatcttctt	4	11	5	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248166561	T	T	248166561	1	4	12	0	1	0	0	0	0	0	0	0	11100	609	21	4		4	OR2L13	1	248166561	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	6208026	248166561	1084060	50	30084											
SDC1	6382	broad.mit.edu	37	chr2	20403660	20403660	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcagaaggacctccatcctCtgtgtggggagtgtgaaggt	16	8	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20403660	G	G	20403660	3	3	12	1	0	0	0	0	1	0	0	0	14064	922	32	4	403	4	SDC1	2	20403660	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08		20403660	222795713	51	30085											
ABHD1	84696	broad.mit.edu	37	chr2	27352658	27352658	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacctggcacaggccaggcaGgctgcagggctggtggcagc	17	13	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27352658	C	C	27352658	3	2	12	1	0	0	0	0	1	0	0	0	73	991	35	4	676	4	ABHD1	2	27352658	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	6948998	27352658	215846715	52	30086											
MAP4K3	8491	broad.mit.edu	37	chr2	39507345	39507345	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actcagaaaataaacaaaatCacaaatgctttcatggcccc	4	11	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39507345	T	T	39507345	1	4	12	0	1	0	0	0	0	0	0	0	9353	841	29	4		4	MAP4K3	2	39507345	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	12154687	39507345	203692028	53	30087											
KIAA1841	84542	broad.mit.edu	37	chr2	61324717	61324717	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactttgtgtctgtatagatTggctttttctgcatatttca	7	6	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61324717	A	A	61324717	1	1	12	0	1	0	0	0	0	0	0	0	8331	1827	63	5		5	KIAA1841	2	61324717	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	21817372	61324717	181874656	54	30088											
MDH1	4190	broad.mit.edu	37	chr2	63832038	63832038	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtgagccttcttaacactGagcgtaaagaactcttgaga	9	9	2	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63832038	C	C	63832038	1	2	12	0	1	0	0	0	0	0	0	0	9501	1305	45	4		4	MDH1	2	63832038	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	2507321	63832038	179367335	55	30089											
SNRNP200	23020	broad.mit.edu	37	chr2	96954353	96954353	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacacagcacacagggattGaactgttcaggccccttctc	9	14	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96954353	A	A	96954353	1	1	12	0	1	0	0	0	0	0	0	0	14966	1305	45	4		4	SNRNP200	2	96954353	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	33122315	96954353	146245020	56	30090			2	29		5	5	2075	G		1.124361e-08
SNRNP200	23020	broad.mit.edu	37	chr2	96954536	96954536	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaatcactgaacagtccaaGaaagggaattacatttctgc	7	10	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96954536	C	C	96954536	1	2	12	0	1	0	0	0	0	0	0	0	14966	957	33	4		4	SNRNP200	2	96954536	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	183	96954536	146244837	57	30091			2	29		5	5	2075	G		1.124361e-08
SNRNP200	23020	broad.mit.edu	37	chr2	96955766	96955766	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctcatggttcttagcatgGagaaactcttgatgtccaaa	9	8	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96955766	T	T	96955766	1	4	12	0	1	0	0	0	0	0	0	0	14966	1189	41	3		3	SNRNP200	2	96955766	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	1230	96955766	146243607	58	30092			2	29		5	5	2075	G		1.124361e-08
SNRNP200	23020	broad.mit.edu	37	chr2	96956196	96956196	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtagctccccatgagatgtGatgagtatgccttcaccctt	9	11	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96956196	A	A	96956196	2	1	12	1	0	0	0	0	0	0	0	1	14966	1280	45	4		4	SNRNP200	2	96956196	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	430	96956196	146243177	59	30093			2	29		5	5	2075	G		1.124361e-08
SNRNP200	23020	broad.mit.edu	37	chr2	96956427	96956427	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaaggctctgtacctgcaGaatgtccagtgctcccagtt	9	12	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96956427	A	A	96956427	2	1	12	1	0	0	0	0	0	0	0	1	14966	933	33	4		4	SNRNP200	2	96956427	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	231	96956427	146242946	60	30094			2	29		5	5	2075	G		1.124361e-08
NMS	129521	broad.mit.edu	37	chr2	101086826	101086826	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgctgcaaataaaggcactTtcttcgctgggctgatcaga	11	10	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101086826	C	C	101086826	1	2	12	0	1	0	0	0	0	0	0	0	10597	1856	64	5		5	NMS	2	101086826	5'Flank	SNP	T	TCGA-05-4402-01A-01D-1265-08	4130399	101086826	142112547	61	30095											
TMEM177	80775	broad.mit.edu	37	chr2	120439041	120439041	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaatttacgggctgccttCagcttggtggcagcagtggc	14	9	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120439041	T	T	120439041	2	4	12	1	0	0	0	0	0	0	0	1	16217	825	29	4		4	TMEM177	2	120439041	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	19352215	120439041	122760332	62	30096											
IWS1	55677	broad.mit.edu	37	chr2	128281394	128281394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacaaaacaaaaaccaaCttatggtgtaagatgaatga	6	5	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128281394	A	A	128281394	1	1	12	0	1	0	0	0	0	0	0	0	8001	580	20	3		3	IWS1	2	128281394	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	7842353	128281394	114917979	63	30097											
KYNU	8942	broad.mit.edu	37	chr2	143642955	143642955	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatggagccttcatctcttGagctgccggctgacacagtg	11	11	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143642955	C	C	143642955	3	2	12	1	0	0	0	0	1	0	0	0	8659	1291	45	4	21	4	KYNU	2	143642955	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	15361561	143642955	99556418	64	30098											
KIF5C	3800	broad.mit.edu	37	chr2	149862006	149862006	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctttgtctgaatgggactGagaagaaaatcaaagatggc	11	6	3	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149862006	C	C	149862006	1	2	12	0	1	0	0	0	0	0	0	0	8377	1305	45	4		4	KIF5C	2	149862006	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	6219051	149862006	93337367	65	30099											
SCRN3	79634	broad.mit.edu	37	chr2	175268854	175268854	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagttcgtaatatttctaatCaactttccataacaaccaag	4	9	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175268854	T	T	175268854	4	4	12	1	0	0	0	0	0	1	0	0	14053	827	29	4	579	4	SCRN3	2	175268854	Nonsense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	25406848	175268854	67930519	66	30100											
ITGAV	3685	broad.mit.edu	37	chr2	187529057	187529057	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattcgatttgcacccagtGtgctattttctgttttctat	7	9	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187529057	A	A	187529057	1	1	12	0	1	0	0	0	0	0	0	0	7958	1392	48	4		4	ITGAV	2	187529057	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	12260203	187529057	55670316	67	30101											
TMEFF2	23671	broad.mit.edu	37	chr2	193059202	193059202	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcagccagcaaaagccctCgcaaagtgtccagctgctgc	10	15	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193059202	T	T	193059202	3	4	12	1	0	0	0	0	1	0	0	0	16137	893	31	4	1115	4	TMEFF2	2	193059202	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	5530145	193059202	50140171	68	30102											
HECW2	57520	broad.mit.edu	37	chr2	197106927	197106927	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggcattggcacgctgggtAcctgcagcaaaccacaaaga	12	12	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197106927	G	G	197106927	2	3	12	1	0	0	0	0	0	0	0	1	7110	405	14	5		5	HECW2	2	197106927	Silent	SNP	A	TCGA-05-4402-01A-01D-1265-08	4047725	197106927	46092446	69	30103											
CCDC150	284992	broad.mit.edu	37	chr2	197531497	197531497	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgattctatacagagcgctCaagaactactggcccaggaa	10	10	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197531497	G	G	197531497	3	3	12	1	0	0	0	0	1	0	0	0	2811	827	29	4	843	4	CCDC150	2	197531497	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	424570	197531497	45667876	70	30104											
ABCA12	26154	broad.mit.edu	37	chr2	215851396	215851396	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccccatgcagggcaacccCgactgtgagatctttaggtt	11	12	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215851396	T	T	215851396	3	4	12	1	0	0	0	0	1	0	0	0	30	652	23	4	3858	4	ABCA12	2	215851396	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	18319899	215851396	27347977	71	30105											
FAM134A	79137	broad.mit.edu	37	chr2	220043543	220043543	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgagtcgcgagttaggcctgGaggtgccattaccccatcag	13	11	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220043543	C	C	220043543	1	2	12	0	1	0	0	0	0	0	0	0	5491	1189	41	4		4	FAM134A	2	220043543	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	4192147	220043543	23155830	72	30106											
DNAJB2	3300	broad.mit.edu	37	chr2	220147600	220147600	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttcagaaccggggttccCgacactcaggccccttcttt	9	15	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220147600	T	T	220147600	4	4	12	1	0	0	0	0	0	1	0	0	4660	644	23	4	412	4	DNAJB2	2	220147600	Nonsense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	104057	220147600	23051773	73	30107											
PTPRN	5798	broad.mit.edu	37	chr2	220172089	220172089	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgggggtgataggaatattCcttgaagagaaatcttcttc	12	5	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220172089	A	A	220172089	1	1	12	0	1	0	0	0	0	0	0	0	12915	870	30	3		3	PTPRN	2	220172089	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	24489	220172089	23027284	74	30108											
CHRNG	1146	broad.mit.edu	37	chr2	233409066	233409066	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgccctagtgaagccacCccctctctaggtgttcctga	9	15	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233409066	G	G	233409066	1	3	12	0	1	0	0	0	0	0	0	0	3427	638	22	4		4	CHRNG	2	233409066	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	13236977	233409066	9790307	75	30109											
UGT1A5	54579	broad.mit.edu	37	chr2	234663633	234663633	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgaagacctcggcggggtCacggaagctgaagacctact	13	12	1	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234663633	G	G	234663633	1	3	12	0	1	0	0	0	0	0	0	0	17074	841	29	4		4	UGT1A5	2	234663633	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1254567	234663633	8535740	76	30110											
PER2	8864	broad.mit.edu	37	chr2	239170885	239170885	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttcctgctccatgggttGatgaagctggaccagctggt	12	9	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239170885	A	A	239170885	2	1	12	1	0	0	0	0	0	0	0	1	11824	1280	45	4		4	PER2	2	239170885	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	4507252	239170885	4028488	77	30111											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239237473	239237473	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttcacaaaaatacagaggtGaattccaagtcgcacatctt	7	9	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239237473	A	A	239237473	1	1	12	0	1	0	0	0	0	0	0	0	16564	1305	45	4		4	TRAF3IP1	2	239237473	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	66588	239237473	3961900	78	30112											
C2orf54	79919	broad.mit.edu	37	chr2	241826585	241826585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaagacctggaactacaGgcagggttgcaggggagaag	17	6	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241826585	T	T	241826585	1	4	12	0	1	0	0	0	0	0	0	0	2197	1015	35	2		2	C2orf54	2	241826585	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	2589112	241826585	1372788	79	30113											
DLEC1	9940	broad.mit.edu	37	chr3	38151719	38151719	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacggacccgtttctccctCaagtttgagtatttcgggag	10	10	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38151719	G	G	38151719	2	3	12	1	0	0	0	0	0	0	0	1	4592	813	29	4		4	DLEC1	3	38151719	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08		38151719	159870711	80	30114											
MAP4	4134	broad.mit.edu	37	chr3	47958732	47958732	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaaaatgcttactttcttCaggcatgagagtatttggct	8	6	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47958732	T	T	47958732	1	4	12	0	1	0	0	0	0	0	0	0	9350	841	29	4		4	MAP4	3	47958732	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	9807013	47958732	150063698	81	30115											
CACNA1D	776	broad.mit.edu	37	chr3	53785859	53785859	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccagtacaagttctggtaCgtggtgaactcttcgccttt	9	10	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53785859	G	G	53785859	4	3	12	1	0	0	0	0	0	1	0	0	2567	547	19	4	3882	4	CACNA1D	3	53785859	Nonsense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	5827127	53785859	144236571	82	30116											
DNAH12	201625	broad.mit.edu	37	chr3	57509260	57509260	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagatgaaactactttgcaAtaatttctttgaacattttc	4	6	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57509260	G	G	57509260	1	3	12	0	1	0	0	0	0	0	0	0	4640	116	4	5		5	DNAH12	3	57509260	Intron	SNP	A	TCGA-05-4402-01A-01D-1265-08	3723401	57509260	140513170	83	30117											
PTPRG	5793	broad.mit.edu	37	chr3	62109953	62109953	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctgcaaggacaggatgctGatgtccgtgttgagggtggt	17	7	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62109953	T	T	62109953	1	4	12	0	1	0	0	0	0	0	0	0	12910	1305	45	3		3	PTPRG	3	62109953	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	4600693	62109953	135912477	84	30118											
C3orf38	285237	broad.mit.edu	37	chr3	88205273	88205273	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaattctcagaatccttttCtaggaccacctcaagatgaa	5	10	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88205273	G	G	88205273	3	3	12	1	0	0	0	0	1	0	0	0	2250	912	32	4	488	4	C3orf38	3	88205273	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	26095320	88205273	109817157	85	30119											
SIDT1	54847	broad.mit.edu	37	chr3	113285349	113285349	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggttcgccagcagaaagAggtgctgtcctggcaggttc	15	9	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113285349	C	C	113285349	3	2	12	1	0	0	0	0	1	0	0	0	14415	304	11	5	311	5	SIDT1	3	113285349	Missense_Mutation	SNP	A	TCGA-05-4402-01A-01D-1265-08	25080076	113285349	84737081	86	30120											
KIAA2018	205717	broad.mit.edu	37	chr3	113378190	113378190	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaagcaacagtgttcattGaggaagtactcactagatta	8	7	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113378190	A	A	113378190	3	1	12	1	0	0	0	0	1	0	0	0	8338	1294	45	4	4402	4	KIAA2018	3	113378190	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	92841	113378190	84644240	87	30121											
KBTBD12	166348	broad.mit.edu	37	chr3	127702910	127702910	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttaatacccacatgagaTttttgtcttcccactttgct	4	10	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127702910	A	A	127702910	1	1	12	0	1	0	0	0	0	0	0	0	8061	1508	52	5		5	KBTBD12	3	127702910	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	14324720	127702910	70319520	88	30122											
COPG	22820	broad.mit.edu	37	chr3	128987334	128987334	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atggtgacctctcttcacctCcaggtctgactgtgtccatc	8	14	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128987334	G	G	128987334	1	3	12	0	1	0	0	0	0	0	0	0	3763	870	30	4		4	COPG	3	128987334	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1284424	128987334	69035096	89	30123											
ATR	545	broad.mit.edu	37	chr3	142255000	142255000	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttttaattctggatgatCaggtaaaaaatatatttcat	5	4	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142255000	G	G	142255000	3	3	12	1	0	0	0	0	1	0	0	0	1208	826	29	4	4277	4	ATR	3	142255000	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	13267666	142255000	55767430	90	30124											
SERPINI1	5274	broad.mit.edu	37	chr3	167510457	167510457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaatgctgtctatttcaaGgggaactggaagtcgcagtt	11	6	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167510457	T	T	167510457	3	4	12	1	0	0	0	0	1	0	0	0	14231	991	35	2	571	2	SERPINI1	3	167510457	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	25255457	167510457	30511973	91	30125											
ARPM1	84517	broad.mit.edu	37	chr3	169485492	169485492	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaattcctcaggcctgtatCacatttcattatgctgctga	8	10	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169485492	T	T	169485492	3	4	12	1	0	0	0	0	1	0	0	0	980	826	29	4	275	4	ARPM1	3	169485492	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	1975035	169485492	28536938	92	30126											
ALG3	10195	broad.mit.edu	37	chr3	183963615	183963615	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtgtctggaagaagacaaGatgatctggttacttctgag	12	6	3	5			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183963615	A	A	183963615	1	1	12	0	1	0	0	0	0	0	0	0	520	957	33	4		4	ALG3	3	183963615	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	14478123	183963615	14058815	93	30127											
LRCH3	84859	broad.mit.edu	37	chr3	197581296	197581296	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaaggtctcagcacactGatgatagtgccttgtgcatg	11	10	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197581296	A	A	197581296	3	1	12	1	0	0	0	0	1	0	0	0	9021	1290	45	4	1678	4	LRCH3	3	197581296	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	13617681	197581296	441134	94	30128											
ATP8A1	10396	broad.mit.edu	37	chr4	42457409	42457409	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatctctcaaatattccaaGagttaaaggaggcattgctg	9	7	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42457409	C	C	42457409	3	2	12	1	0	0	0	0	1	0	0	0	1196	942	33	4	808	4	ATP8A1	4	42457409	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08		42457409	148696867	95	30129											
UBA6	55236	broad.mit.edu	37	chr4	68484822	68484822	+	Frame_Shift_Del	DEL	C	-	-													aagatccacatatttcttttCagtagtaggttttacaagtt							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68484822	-	-	68484822	7	5	12	1	0	1	0	1	0	0	0	0	16958	835	29	0	110	0	UBA6	4	68484822	Frame_Shift_Del	DEL	C	TCGA-05-4402-01A-01D-1265-08	26027413	68484822	122669454	96	30130											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68812269	68812269	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggcttcagatttctgcttCgggtgccaaatcccactgtc	9	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68812269	T	T	68812269	3	4	12	1	0	0	0	0	1	0	0	0	16362	884	31	4	1269	4	TMPRSS11A	4	68812269	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	327447	68812269	122342007	97	30131											
PF4V1	5197	broad.mit.edu	37	chr4	74719205	74719205	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagaaaccaggctgggagGgccagcagcggcgaggggga	20	9	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74719205	A	A	74719205	1	1	12	0	1	0	0	0	0	0	0	0	11848	1247	43	4		4	PF4V1	4	74719205	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	5906936	74719205	116435071	98	30132											
ART3	419	broad.mit.edu	37	chr4	77021321	77021321	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagtttagtagggtagtttCctggacgtatcaaatggttc	11	5	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77021321	T	T	77021321	1	4	12	0	1	0	0	0	0	0	0	0	1002	870	30	4		4	ART3	4	77021321	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	2302116	77021321	114132955	99	30133											
SPARCL1	8404	broad.mit.edu	37	chr4	88411708	88411708	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatttggcatcaaaaaaatCaactaaactgtaccaacggt	5	10	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88411708	G	G	88411708	1	3	12	0	1	0	0	0	0	0	0	0	15112	841	29	4		4	SPARCL1	4	88411708	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	11390387	88411708	102742568	100	30134											
BANK1	55024	broad.mit.edu	37	chr4	102839186	102839186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccaactcttctccactGtgcagcaaaatttggcttaa	5	12	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102839186	T	T	102839186	3	4	12	1	0	0	0	0	1	0	0	0	1314	1377	48	3	1072	3	BANK1	4	102839186	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	14427478	102839186	88315090	101	30135											
KIAA1109	84162	broad.mit.edu	37	chr4	123167988	123167988	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaatactttattaatctGagccatgattatcttgctgg	7	6	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123167988	A	A	123167988	1	1	12	0	1	0	0	0	0	0	0	0	8278	1305	45	4		4	KIAA1109	4	123167988	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	20328802	123167988	67986288	102	30136											
ANKRD50	57182	broad.mit.edu	37	chr4	125591892	125591892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatgtgcaaaggtgtccatCcagcatcatctctgtgattt	8	11	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125591892	A	A	125591892	3	1	12	1	0	0	0	0	1	0	0	0	677	855	30	3	1753	3	ANKRD50	4	125591892	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	2423904	125591892	65562384	103	30137											
GYPA	2993	broad.mit.edu	37	chr4	145038171	145038171	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caactgaaaaataagacagaTaacatcagcataccatcacc	4	11	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145038171	C	C	145038171	1	2	12	0	1	0	0	0	0	0	0	0	6973	1421	49	5		5	GYPA	4	145038171	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	19446279	145038171	46116105	104	30138											
SDHA	6389	broad.mit.edu	37	chr5	251536	251536	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcagaccatctacggagcaGaggcacggaaggagtcacgg	15	10	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	251536	C	C	251536	3	2	12	1	0	0	0	0	1	0	0	0	14076	943	33	4	1797	4	SDHA	5	251536	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08		251536	180663724	105	30139											
SLC9A3	6550	broad.mit.edu	37	chr5	481755	481755	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatgtggtcgaaagcctttCaagggaagaaagacatgagc	14	6	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	481755	T	T	481755	1	4	12	0	1	0	0	0	0	0	0	0	14827	841	29	4		4	SLC9A3	5	481755	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	230219	481755	180433505	106	30140											
IRX1	79192	broad.mit.edu	37	chr5	3600724	3600724	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttccgatctctcgcagaGagagacctcgtccccaggcc	9	17	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3600724	A	A	3600724	2	1	12	1	0	0	0	0	0	0	0	1	7913	956	33	4		4	IRX1	5	3600724	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	3118969	3600724	177314536	107	30141											
ADAMTS16	170690	broad.mit.edu	37	chr5	5190093	5190093	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgcacagccaggactgGtgataagtcaccacgcagac	10	13	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5190093	A	A	5190093	3	1	12	1	0	0	0	0	1	0	0	0	261	1261	44	4	1083	4	ADAMTS16	5	5190093	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1589369	5190093	175725167	108	30142											
MYO10	4651	broad.mit.edu	37	chr5	16701570	16701570	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaagttgaagttgggcttCtcctcgcatgcgctctcagc	11	12	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16701570	T	T	16701570	2	4	12	1	0	0	0	0	0	0	0	1	10156	912	32	4		4	MYO10	5	16701570	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	11511477	16701570	164213690	109	30143											
CDH6	1004	broad.mit.edu	37	chr5	31317488	31317488	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtttttctcttagttgattCagaccctgcatgctgttgac	9	9	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31317488	G	G	31317488	3	3	12	1	0	0	0	0	1	0	0	0	3144	827	29	4	1553	4	CDH6	5	31317488	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	14615918	31317488	149597772	110	30144											
PLK2	10769	broad.mit.edu	37	chr5	57753340	57753340	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagcccagggcccaaatgtCtgattcacagccatgtcctt	8	14	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57753340	T	T	57753340	3	4	12	1	0	0	0	0	1	0	0	0	12191	913	32	4	1309	4	PLK2	5	57753340	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	26435852	57753340	123161920	111	30145											
PPWD1	23398	broad.mit.edu	37	chr5	64867882	64867882	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttctgacaaatctgggatGattgaatactggactgggcc	11	8	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64867882	A	A	64867882	3	1	12	1	0	0	0	0	1	0	0	0	12515	1290	45	4	756	4	PPWD1	5	64867882	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	7114542	64867882	116047378	112	30146											
ERBB2IP	55914	broad.mit.edu	37	chr5	65288649	65288649	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attattctcattgcagcttaGaacaagttccgaaagagatt	7	7	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65288649	C	C	65288649	3	2	12	1	0	0	0	0	1	0	0	0	5249	943	33	4	105	4	ERBB2IP	5	65288649	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	420767	65288649	115626611	113	30147											
MAST4	375449	broad.mit.edu	37	chr5	66460707	66460707	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagagttcaagagggacagGaaaggtccccatcctactgc	11	12	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66460707	A	A	66460707	2	1	12	1	0	0	0	0	0	0	0	1	9419	1165	41	4		4	MAST4	5	66460707	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	1172058	66460707	114454553	114	30148											
CD180	4064	broad.mit.edu	37	chr5	66480332	66480332	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgtttctgccatgaatatCaggggatttccagttaacac	9	8	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66480332	G	G	66480332	2	3	12	1	0	0	0	0	0	0	0	1	3002	813	29	4		4	CD180	5	66480332	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	19625	66480332	114434928	115	30149											
PIK3R1	5295	broad.mit.edu	37	chr5	67590322	67590322	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttgcagtaagagattgttCtatgaaaggtatgacattat	9	4	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67590322	G	G	67590322	1	3	12	0	1	0	0	0	0	0	0	0	12013	928	32	4		4	PIK3R1	5	67590322	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1109990	67590322	113324938	116	30150											
ENC1	8507	broad.mit.edu	37	chr5	73931322	73931322	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacatgcactaaactcttttCttgggctgggaatgtcagcc	9	11	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73931322	G	G	73931322	3	3	12	1	0	0	0	0	1	0	0	0	5155	913	32	4	784	4	ENC1	5	73931322	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	6341000	73931322	106983938	117	30151											
F2R	2149	broad.mit.edu	37	chr5	76028674	76028674	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgtggtgtatcccatGcagtccctctcctggcgtac	11	14	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76028674	A	A	76028674	3	1	12	1	0	0	0	0	1	0	0	0	5386	1319	46	4	630	4	F2R	5	76028674	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	2097352	76028674	104886586	118	30152											
RIOK2	55781	broad.mit.edu	37	chr5	96518631	96518631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagaagacgggacctttgCtctatctgggggaaggtaag	14	6	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96518631	A	A	96518631	1	1	12	0	1	0	0	0	0	0	0	0	13489	812	28	3		3	RIOK2	5	96518631	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	20489957	96518631	84396629	119	30153											
SLCO4C1	353189	broad.mit.edu	37	chr5	101595922	101595922	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaattttattttacctttaGagcagctggaaaatctttaa	6	5	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101595922	C	C	101595922	3	2	12	1	0	0	0	0	1	0	0	0	14844	933	33	4	1083	4	SLCO4C1	5	101595922	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	5077291	101595922	79319338	120	30154											
SLCO6A1	133482	broad.mit.edu	37	chr5	101755593	101755593	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgtacaaaaataataaacAcaagcagtataagtgatatc	6	6	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101755593	T	T	101755593	3	4	12	1	0	0	0	0	1	0	0	0	14846	159	6	5	774	5	SLCO6A1	5	101755593	Missense_Mutation	SNP	A	TCGA-05-4402-01A-01D-1265-08	159671	101755593	79159667	121	30155											
APC	324	broad.mit.edu	37	chr5	112175532	112175533	+	Frame_Shift_Ins	INS	-	A	A													gaaccatgcagtggaatggtINSaagtggcattataagcccca							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112175533	A	A	112175532	7	5	12	1	0	1	1	0	0	0	0	0	765	1638	57	0	4299	0	APC	5	112175532	Frame_Shift_Ins	INS	-	TCGA-05-4402-01A-01D-1265-08	10419939	112175532	68739728	122	30156											
CD14	929	broad.mit.edu	37	chr5	140012043	140012043	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagtgtgcttgggcaatgcTcagtaccttgaggcctggct	14	10	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140012043	G	G	140012043	3	3	12	1	0	0	0	0	1	0	0	0	2994	1551	54	5	605	5	CD14	5	140012043	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	27836511	140012043	40903217	123	30157											
TMCO6	55374	broad.mit.edu	37	chr5	140022504	140022504	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttacagccctgcttctgcCagcagctccatcttggcctc	7	17	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140022504	G	G	140022504	1	3	12	0	1	0	0	0	0	0	0	0	16123	609	21	4		4	TMCO6	5	140022504	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	10461	140022504	40892756	124	30158											
PCDHGC5	56097	broad.mit.edu	37	chr5	140890710	140890710	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaggtggcaatggcaacaaGaagaagtcgggcaagaagga	16	6	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140890710	C	C	140890710	3	2	12	1	0	0	0	0	1	0	0	0	11665	933	33	4	2994	4	PCDHGC5	5	140890710	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	868206	140890710	40024550	125	30159											
FAT2	2196	broad.mit.edu	37	chr5	150928851	150928851	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgagctcatggccaggcctCtcacctttcaggagggagta	12	12	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150928851	G	G	150928851	1	3	12	0	1	0	0	0	0	0	0	0	5747	928	32	4		4	FAT2	5	150928851	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	10038141	150928851	29986409	126	30160											
HMP19	51617	broad.mit.edu	37	chr5	173531304	173531304	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtttacaaagccttcaCctatgatcacagctgcccag	9	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173531304	G	G	173531304	3	3	12	1	0	0	0	0	1	0	0	0	7312	507	18	4	297	4	HMP19	5	173531304	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	22602453	173531304	7383956	127	30161											
GPRIN1	114787	broad.mit.edu	37	chr5	176026184	176026184	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgctggagcacaaaggatCtacttttcccagggatccaa	9	11	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176026184	G	G	176026184	3	3	12	1	0	0	0	0	1	0	0	0	6795	913	32	4	2378	4	GPRIN1	5	176026184	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	2494880	176026184	4889076	128	30162											
ZFP2	80108	broad.mit.edu	37	chr5	178359365	178359365	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcggagaattcacactggaGagaaaccttatgagtgtatg	11	6	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178359365	A	A	178359365	3	1	12	1	0	0	0	0	1	0	0	0	17767	943	33	4	1053	4	ZFP2	5	178359365	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	2333181	178359365	2555895	129	30163											
PAK1IP1	55003	broad.mit.edu	37	chr6	10707679	10707679	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttcagttttgaaattccaGagcatcatgttattgtttca	7	6	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10707679	C	C	10707679	3	2	12	1	0	0	0	0	1	0	0	0	11494	943	33	4	802	4	PAK1IP1	6	10707679	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08		10707679	160407388	130	30164											
FAM65B	9750	broad.mit.edu	37	chr6	24852878	24852878	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattggaaggtgaggtgtaGaacatatttcccctctctat	9	7	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24852878	C	C	24852878	1	2	12	0	1	0	0	0	0	0	0	0	5651	957	33	4		4	FAM65B	6	24852878	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	14145199	24852878	146262189	131	30165											
HFE	3077	broad.mit.edu	37	chr6	26093249	26093249	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggggttgagaggagtgcctGaggaggtaattatggcagtg	20	3	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26093249	C	C	26093249	1	2	12	0	1	0	0	0	0	0	0	0	7148	1305	45	4		4	HFE	6	26093249	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	1240371	26093249	145021818	132	30166											
HIST1H2AK	8330	broad.mit.edu	37	chr6	27805723	27805723	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaatgaactgctccagcccCgctacttgcccttggccttg	9	15	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27805723	T	T	27805723	1	4	12	0	1	0	0	0	0	0	0	0	7204	667	23	4		4	HIST1H2AK	6	27805723	3'UTR	SNP	C	TCGA-05-4402-01A-01D-1265-08	1712474	27805723	143309344	133	30167											
MRPS18B	28973	broad.mit.edu	37	chr6	30593107	30593107	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaagcaagagccccagcaGtatgtcagcccacacttgcc	9	14	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30593107	A	A	30593107	1	1	12	0	1	0	0	0	0	0	0	0	9923	1044	36	4		4	MRPS18B	6	30593107	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	2787384	30593107	140521960	134	30168											
VARS	7407	broad.mit.edu	37	chr6	31752254	31752254	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcacggagagcagggtgCgacctgtcagctccttctta	13	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31752254	T	T	31752254	3	4	12	1	0	0	0	0	1	0	0	0	17250	768	27	4	2377	4	VARS	6	31752254	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	1159147	31752254	139362813	135	30169											
KIF6	221458	broad.mit.edu	37	chr6	39507674	39507674	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatagttataaaaaataattCtaacaaagaaattgagcctt	5	4	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39507674	G	G	39507674	1	3	12	0	1	0	0	0	0	0	0	0	8378	928	32	4		4	KIF6	6	39507674	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	7755420	39507674	131607393	136	30170											
RUNX2	860	broad.mit.edu	37	chr6	45459812	45459812	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccctccctgaactctgcaCcaagtccttttaatccacaa	5	16	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45459812	T	T	45459812	3	4	12	1	0	0	0	0	1	0	0	0	13859	507	18	4	854	4	RUNX2	6	45459812	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	5952138	45459812	125655255	137	30171											
KHDRBS2	202559	broad.mit.edu	37	chr6	62688017	62688017	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaatgcatgactcatacgtGaataagcttccccaggtgga	9	11	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62688017	A	A	62688017	3	1	12	1	0	0	0	0	1	0	0	0	8217	1294	45	4	636	4	KHDRBS2	6	62688017	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	17228205	62688017	108427050	138	30172											
EYA4	2070	broad.mit.edu	37	chr6	133844425	133844425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaacaaatttggataaaGttcaaattacaaagtcccct	5	7	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133844425	T	T	133844425	1	4	12	0	1	0	0	0	0	0	0	0	5374	1044	36	3		3	EYA4	6	133844425	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	71156408	133844425	37270642	139	30173											
NUP43	348995	broad.mit.edu	37	chr6	150052878	150052878	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgaacttcccacactaagaGacaagaatcaataagctcat	6	10	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150052878	C	C	150052878	1	2	12	0	1	0	0	0	0	0	0	0	10860	957	33	4		4	NUP43	6	150052878	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	16208453	150052878	21062189	140	30174											
PNLDC1	154197	broad.mit.edu	37	chr6	160222239	160222240	+	Intron	INS	-	A	A													tgagtttaatatcagctgttINSagagtttttcaagaaggtat							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160222240	A	A	160222239	6	5	12	0	1	1	1	0	0	0	0	0	12243	1769	61	0		0	PNLDC1	6	160222239	Intron	INS	-	TCGA-05-4402-01A-01D-1265-08	10169361	160222239	10892828	141	30175											
HEATR2	54919	broad.mit.edu	37	chr7	813597	813597	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgttttcctgtttggctccCccctcagccccattcatccc	5	19	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	813597	G	G	813597	1	3	12	0	1	0	0	0	0	0	0	0	7095	638	22	4		4	HEATR2	7	813597	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08		813597	158325066	142	30176											
ZFAND2A	90637	broad.mit.edu	37	chr7	1197891	1197891	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagatggcggagttaagtgtCacctacaagagaatcagaat	11	7	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1197891	T	T	1197891	1	4	12	0	1	0	0	0	0	0	0	0	17753	841	29	4		4	ZFAND2A	7	1197891	5'UTR	SNP	C	TCGA-05-4402-01A-01D-1265-08	384294	1197891	157940772	143	30177											
MAD1L1	8379	broad.mit.edu	37	chr7	2108903	2108903	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcgcgcttcttcctctcctCcaacagctggccgctgacct	7	19	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2108903	T	T	2108903	3	4	12	1	0	0	0	0	1	0	0	0	9235	864	30	4	1044	4	MAD1L1	7	2108903	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	911012	2108903	157029760	144	30178											
STK31	56164	broad.mit.edu	37	chr7	23808898	23808898	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacatcatctacctactatgTatcagatttaaaattgccac	4	10	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23808898	A	A	23808898	1	1	12	0	1	0	0	0	0	0	0	0	15414	1653	57	5		5	STK31	7	23808898	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	21699995	23808898	135329765	145	30179											
HECW1	23072	broad.mit.edu	37	chr7	43548608	43548608	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcgggagttcttcttccttCtgtctcaggagctcttcaac	9	13	6	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43548608	T	T	43548608	2	4	12	1	0	0	0	0	0	0	0	1	7109	912	32	4		4	HECW1	7	43548608	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	19739710	43548608	115590055	146	30180											
PKD1L1	168507	broad.mit.edu	37	chr7	47979820	47979820	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagctgatgaggatgggctCtgtgattcccggtcttctgc	14	9	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47979820	T	T	47979820	2	4	12	1	0	0	0	0	0	0	0	1	12059	912	32	4		4	PKD1L1	7	47979820	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	4431212	47979820	111158843	147	30181											
EGFR	1956	broad.mit.edu	37	chr7	55242480	55242503	+	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGA	-	-													atcaaggaattaagagaagcAacatctccgaaagccaacaa					rs121913463		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242503	-	-	55242480	7	5	12	1	0	1	0	1	0	0	0	0	5007	117	5	0	2588	0	EGFR	7	55242480	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGA	TCGA-05-4402-01A-01D-1265-08	7262660	55242480	103896183	148	30182											
PHKG1	5260	broad.mit.edu	37	chr7	56151211	56151211	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagacacagctcacatttCagccacactgcaagggagca	11	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56151211	T	T	56151211	1	4	12	0	1	0	0	0	0	0	0	0	11941	841	29	4		4	PHKG1	7	56151211	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	908731	56151211	102987452	149	30183											
STAG3L4	64940	broad.mit.edu	37	chr7	66774546	66774546	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttatctctttttccttactCaaagctatgaaactgatgac	4	9	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66774546	G	G	66774546	1	3	12	0	1	0	0	0	0	0	0	0	15365	841	29	4		4	STAG3L4	7	66774546	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	10623335	66774546	92364117	150	30184											
CALCR	799	broad.mit.edu	37	chr7	93065408	93065408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagccttcaggtacatgtgGgattccgcctcatgggtttc	11	11	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93065408	T	T	93065408	2	4	12	1	0	0	0	0	0	0	0	1	2605	1219	43	2		2	CALCR	7	93065408	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	26290862	93065408	66073255	151	30185											
COL1A2	1278	broad.mit.edu	37	chr7	94059741	94059741	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attaaaaaagaaagaaatttGaaaaaactttctctttgcca	4	5	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94059741	C	C	94059741	1	2	12	0	1	0	0	0	0	0	0	0	3710	1305	45	4		4	COL1A2	7	94059741	3'UTR	SNP	G	TCGA-05-4402-01A-01D-1265-08	994333	94059741	65078922	152	30186											
ACN9	57001	broad.mit.edu	37	chr7	96810320	96810320	+	Intron	SNP	T	C	C													aaccttcattctttatctttTtaggtgtatgcaacagcgtt							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96810320	C	C	96810320	1	2	12	0	1	0	0	0	0	0	0	0	145	1856	64	5		5	ACN9	7	96810320	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	2750579	96810320	62328343	153	30187	178	2									
ACN9	57001	broad.mit.edu	37	chr7	96810322	96810322	+	Splice_Site	SNP	A	G	G													ccttcattctttatctttttAggtgtatgcaacagcgttat							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96810322	G	G	96810322	5	3	12	1	0	0	0	0	0	0	1	0	145	434	15	5	179	5	ACN9	7	96810322	Splice_Site	SNP	A	TCGA-05-4402-01A-01D-1265-08	2	96810322	62328341	154	30188	178	2									
AP4M1	9179	broad.mit.edu	37	chr7	99702845	99702845	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggagtcaggagagaagtctCtctctctctctttccaggtt	10	10	5	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99702845	G	G	99702845	1	3	12	0	1	0	0	0	0	0	0	0	755	928	32	4		4	AP4M1	7	99702845	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	2892523	99702845	59435818	155	30189											
MUC17	140453	broad.mit.edu	37	chr7	100682517	100682517	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagcatacctgtcaccaCttctactgaaaccagttcat	4	15	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100682517	T	T	100682517	3	4	12	1	0	0	0	0	1	0	0	0	10068	565	20	4	7830	4	MUC17	7	100682517	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	979672	100682517	58456146	156	30190											
CLDN15	24146	broad.mit.edu	37	chr7	100877591	100877591	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagggcccctgcggtggccGccagcttggctttcctggag	17	13	0	0	rs80277788		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100877591	A	A	100877591	3	1	12	1	0	0	0	0	1	0	0	0	3507	1087	38	4	352	4	CLDN15	7	100877591	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	195074	100877591	58261072	157	30191											
PTPRZ1	5803	broad.mit.edu	37	chr7	121636514	121636514	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttacatgggaaagacctcGagtcgtttatgataccatga	10	7	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121636514	C	C	121636514	3	2	12	1	0	0	0	0	1	0	0	0	12922	1058	37	4	1041	4	PTPRZ1	7	121636514	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	20758923	121636514	37502149	158	30192											
RNF133	168433	broad.mit.edu	37	chr7	122338652	122338653	+	Missense_Mutation	DNP	CC	AG	AG													tgtgtgaaggtacaacctccCcgttcaataagtgcaagcca							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	122338653	AG	AG	122338652	3	1	12	1	0	0	0	0	1	0	0	0	13550	610	22	2	813	2	RNF133	7	122338652	Missense_Mutation	DNP	CC	TCGA-05-4402-01A-01D-1265-08	702138	122338652	36800011	159	30193											
SND1	27044	broad.mit.edu	37	chr7	127569613	127569613	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcacaggatgtaggagtaGagcaacttgcaagcacgcag	13	8	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127569613	A	A	127569613	1	1	12	0	1	0	0	0	0	0	0	0	14958	957	33	4		4	SND1	7	127569613	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	5230961	127569613	31569050	160	30194											
MEST	4232	broad.mit.edu	37	chr7	130143804	130143804	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgggccattggatcctgTaaatccctatccagagtttt	8	10	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130143804	G	G	130143804	3	3	12	1	0	0	0	0	1	0	0	0	9577	1638	57	5	899	5	MEST	7	130143804	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	2574191	130143804	28994859	161	30195											
CNOT4	4850	broad.mit.edu	37	chr7	135098287	135098287	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcatcccccaattcatgaaGatacatgcagtcaggttttg	7	11	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135098287	A	A	135098287	3	1	12	1	0	0	0	0	1	0	0	0	3653	942	33	4	1411	4	CNOT4	7	135098287	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	4954483	135098287	24040376	162	30196											
DGKI	9162	broad.mit.edu	37	chr7	137206553	137206553	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctacccatcaaaccaaggaGgatcaagaagctgaagatag	9	9	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137206553	C	C	137206553	1	2	12	0	1	0	0	0	0	0	0	0	4511	1015	35	4		4	DGKI	7	137206553	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	2108266	137206553	21932110	163	30197											
KIAA1549	57670	broad.mit.edu	37	chr7	138602619	138602619	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcgtaaaaacactcgggtCtctgacggcaagcgacggtg	14	10	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138602619	G	G	138602619	3	3	12	1	0	0	0	0	1	0	0	0	8314	913	32	4	4175	4	KIAA1549	7	138602619	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	1396066	138602619	20536044	164	30198											
CLCN1	1180	broad.mit.edu	37	chr7	143027907	143027907	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctccacctactttgctgTtcggaactactggagaggat	9	12	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143027907	G	G	143027907	3	3	12	1	0	0	0	0	1	0	0	0	3493	1725	60	5	926	5	CLCN1	7	143027907	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	4425288	143027907	16110756	165	30199											
ZNF398	57541	broad.mit.edu	37	chr7	148875644	148875644	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctgctgtatttctgatctGagcttcgagtgatctgttag	10	7	4	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148875644	T	T	148875644	1	4	12	0	1	0	0	0	0	0	0	0	18012	1305	45	3		3	ZNF398	7	148875644	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	5847737	148875644	10263019	166	30200											
RNF32	140545	broad.mit.edu	37	chr7	156468278	156468278	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttccctaaaaagtattattCgaagacagagacgaggaagg	10	6	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156468278	G	G	156468278	1	3	12	0	1	0	0	0	0	0	0	0	13599	899	31	4		4	RNF32	7	156468278	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	7592634	156468278	2670385	167	30201											
PTK2B	2185	broad.mit.edu	37	chr8	27287917	27287917	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacttgtttttcccaaagcaGatgcaggagaacttaaaggt	10	7	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27287917	A	A	27287917	2	1	12	1	0	0	0	0	0	0	0	1	12869	933	33	4		4	PTK2B	8	27287917	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08		27287917	119076105	168	30202											
SCARA5	286133	broad.mit.edu	37	chr8	27764655	27764655	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctcagggagaactgagaTtgttattacctttgaaccca	10	8	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27764655	C	C	27764655	1	2	12	0	1	0	0	0	0	0	0	0	13992	1508	52	5		5	SCARA5	8	27764655	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	476738	27764655	118599367	169	30203											
TTPA	7274	broad.mit.edu	37	chr8	63978592	63978592	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctacctcctgtacaataagCtcggatgtgattagacttac	7	10	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63978592	G	G	63978592	3	3	12	1	0	0	0	0	1	0	0	0	16862	796	28	4	425	4	TTPA	8	63978592	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	36213937	63978592	82385430	170	30204											
OSGIN2	734	broad.mit.edu	37	chr8	90937445	90937445	+	Frame_Shift_Del	DEL	G	-	-													caaagcgtttctggattgaaGaaaatatttaagctgtctgc							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90937445	-	-	90937445	7	5	12	1	0	1	0	1	0	0	0	0	11384	933	33	0	1357	0	OSGIN2	8	90937445	Frame_Shift_Del	DEL	G	TCGA-05-4402-01A-01D-1265-08	26958853	90937445	55426577	171	30205											
CDH17	1015	broad.mit.edu	37	chr8	95172175	95172175	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccacaaacaaagacaaattCtattaaataaatgggctatt	4	8	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95172175	A	A	95172175	1	1	12	0	1	0	0	0	0	0	0	0	3132	928	32	3		3	CDH17	8	95172175	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	4234730	95172175	51191847	172	30206											
PTDSS1	9791	broad.mit.edu	37	chr8	97345601	97345601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggaagaacctgttcccCggcaagcctagggcggtctg	14	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97345601	A	A	97345601	1	1	12	0	1	0	0	0	0	0	0	0	12842	667	23	1		1	PTDSS1	8	97345601	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	2173426	97345601	49018421	173	30207											
UBR5	51366	broad.mit.edu	37	chr8	103291157	103291157	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccaaaaagatcctcctttCtagcatttggctggaatttt	8	9	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103291157	G	G	103291157	3	3	12	1	0	0	0	0	1	0	0	0	17031	913	32	4	2278	4	UBR5	8	103291157	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	5945556	103291157	43072865	174	30208											
CSMD3	114788	broad.mit.edu	37	chr8	113694818	113694818	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagttgtccccaaaccgccGtgcattgattggtattccag	9	11	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113694818	A	A	113694818	3	1	12	1	0	0	0	0	1	0	0	0	3980	1144	40	4	8817	4	CSMD3	8	113694818	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	10403661	113694818	32669204	175	30209											
DEPDC6	64798	broad.mit.edu	37	chr8	120886368	120886368	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcggtgcgcccgcgcttaGctgctgcagcctcggtccct	12	18	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120886368	C	C	120886368	1	2	12	0	1	0	0	0	0	0	0	0	4483	986	34	4		4	DEPDC6	8	120886368	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	7191550	120886368	25477654	176	30210											
DEPDC6	64798	broad.mit.edu	37	chr8	121019082	121019082	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctctgaggaactccttactCccggggctccgtatgcaagg	11	14	1	1	rs141805893		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121019082	T	T	121019082	3	4	12	1	0	0	0	0	1	0	0	0	4483	855	30	4	990	4	DEPDC6	8	121019082	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	132714	121019082	25344940	177	30211											
COL14A1	7373	broad.mit.edu	37	chr8	121312847	121312847	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatcaggagtgaatattctCtgcctttctaatgtgcactt	7	8	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121312847	G	G	121312847	1	3	12	0	1	0	0	0	0	0	0	0	3703	928	32	4		4	COL14A1	8	121312847	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	293765	121312847	25051175	178	30212											
WDR67	93594	broad.mit.edu	37	chr8	124089411	124089411	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaaagttttgcgatttttGaatgtggcttttgatggcac	10	6	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124089411	C	C	124089411	3	2	12	1	0	0	0	0	1	0	0	0	17445	1281	45	4	144	4	WDR67	8	124089411	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	2776564	124089411	22274611	179	30213											
PYCRL	65263	broad.mit.edu	37	chr8	144689207	144689207	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaggagccacctctgccagGacagctggcagcacatgagg	13	13	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144689207	C	C	144689207	2	2	12	1	0	0	0	0	0	0	0	1	12965	1161	41	4		4	PYCRL	8	144689207	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	20599796	144689207	1674815	180	30214											
MLANA	2315	broad.mit.edu	37	chr9	5907029	5907029	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccttcataagggtattttCatgaatggctgtttttaact	7	6	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5907029	A	A	5907029	1	1	12	0	1	0	0	0	0	0	0	0	9704	841	29	3		3	MLANA	9	5907029	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08		5907029	135306402	181	30215											
TTC39B	158219	broad.mit.edu	37	chr9	15214314	15214315	+	Intron	DEL	GT	-	-													cagcaagttgtccgaagggaGtgtgtgtgtgtgtgtgtgtg							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15214315	-	-	15214314	6	5	12	0	1	1	0	1	0	0	0	0	16834	1044	36	0		0	TTC39B	9	15214314	Intron	DEL	GT	TCGA-05-4402-01A-01D-1265-08	9307285	15214314	125999117	182	30216											
NTRK2	4915	broad.mit.edu	37	chr9	87338475	87338475	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catatgcctctgtttactttTcttgttccataggtttgcca	6	10	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87338475	C	C	87338475	1	2	12	0	1	0	0	0	0	0	0	0	10802	1798	62	5		5	NTRK2	9	87338475	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	72124161	87338475	53874956	183	30217											
TDRD7	23424	broad.mit.edu	37	chr9	100258036	100258036	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggcactggtgcagacagtCattgaaaatgctaacccttg	11	9	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100258036	T	T	100258036	2	4	12	1	0	0	0	0	0	0	0	1	15857	813	29	4		4	TDRD7	9	100258036	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	12919561	100258036	40955395	184	30218											
COL15A1	1306	broad.mit.edu	37	chr9	101810164	101810164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctggagggggaggacaCgtgggccaggctggtctgtg	21	8	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101810164	T	T	101810164	1	4	12	0	1	0	0	0	0	0	0	0	3704	551	19	4		4	COL15A1	9	101810164	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1552128	101810164	39403267	185	30219											
EPB41L4B	54566	broad.mit.edu	37	chr9	112030806	112030806	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctaaaagccttagtaattCtacccacaaaaaccagggtt	5	11	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112030806	T	T	112030806	1	4	12	0	1	0	0	0	0	0	0	0	5198	928	32	4		4	EPB41L4B	9	112030806	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	10220642	112030806	29182625	186	30220											
NUP214	8021	broad.mit.edu	37	chr9	134003067	134003067	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttcctactaaaaatcttCttattcaaaataaacccgga	2	9	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134003067	T	T	134003067	3	4	12	1	0	0	0	0	1	0	0	0	10857	913	32	4	208	4	NUP214	9	134003067	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	21972261	134003067	7210364	187	30221											
ITIH5	80760	broad.mit.edu	37	chr10	7621669	7621669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattcccaccgcagccaccCctcagcccctcaaacagcct	5	21	2	0	rs141006191	by1000genomes	TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7621669	A	A	7621669	1	1	12	0	1	0	0	0	0	0	0	0	7977	638	22	2		2	ITIH5	10	7621669	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08		7621669	127913078	188	30222											
FAM21B	55747	broad.mit.edu	37	chr10	47909352	47909352	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggggtccacagggaagaTataggctttgcttgtttagt	13	6	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47909352	A	A	47909352	1	1	12	0	1	0	0	0	0	0	0	0	5588	1421	49	5		5	FAM21B	10	47909352	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	40287683	47909352	87625395	189	30223											
NCOA4	8031	broad.mit.edu	37	chr10	51585290	51585290	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatatgtggctctgtccTagaaaagaagtaatagaaca	9	6	1	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51585290	C	C	51585290	2	2	12	1	0	0	0	0	0	0	0	1	10326	1509	53	5		5	NCOA4	10	51585290	Silent	SNP	T	TCGA-05-4402-01A-01D-1265-08	3675938	51585290	83949457	190	30224											
TTC18	118491	broad.mit.edu	37	chr10	75082846	75082846	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaaacgaaagctgagcttCttcatcagtctaaaggaata	8	7	4	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75082846	A	A	75082846	4	1	12	1	0	0	0	0	0	1	0	0	16811	922	32	3	2444	3	TTC18	10	75082846	Nonsense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	23497556	75082846	60451901	191	30225											
RPP30	10556	broad.mit.edu	37	chr10	92660374	92660374	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctctacagtgaagaaacctCggccatcagaaggagatgaa	10	9	2	5			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92660374	A	A	92660374	2	1	12	1	0	0	0	0	0	0	0	1	13723	875	31	3		3	RPP30	10	92660374	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	17577528	92660374	42874373	192	30226											
HECTD2	143279	broad.mit.edu	37	chr10	93221714	93221714	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacatttctttttattttcaGaaattttgccctaacagttc	3	8	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93221714	C	C	93221714	1	2	12	0	1	0	0	0	0	0	0	0	7107	957	33	4		4	HECTD2	10	93221714	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	561340	93221714	42313033	193	30227											
CYP26C1	340665	broad.mit.edu	37	chr10	94828109	94828109	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaagggctggagcgtgatGtatagcatccgggacacgca	14	11	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94828109	A	A	94828109	3	1	12	1	0	0	0	0	1	0	0	0	4190	1377	48	4	1246	4	CYP26C1	10	94828109	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1606395	94828109	40706638	194	30228											
PKD2L1	9033	broad.mit.edu	37	chr10	102048820	102048820	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atagcttgttccttctgttgGaagaagaaagggacaaatca	10	6	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102048820	A	A	102048820	1	1	12	0	1	0	0	0	0	0	0	0	12062	1189	41	4		4	PKD2L1	10	102048820	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	7220711	102048820	33485927	195	30229											
COL17A1	1308	broad.mit.edu	37	chr10	105796299	105796299	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctctgcatagtccaaagaCaggagggacccatctccact	9	13	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105796299	T	T	105796299	2	4	12	1	0	0	0	0	0	0	0	1	3706	465	17	4		4	COL17A1	10	105796299	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	3747479	105796299	29738448	196	30230											
C10orf79	80217	broad.mit.edu	37	chr10	105926410	105926410	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctcttcctcttcttcatCatcctcttcatgacgctgtt	3	15	7	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105926410	T	T	105926410	3	4	12	1	0	0	0	0	1	0	0	0	1629	826	29	4	2186	4	C10orf79	10	105926410	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	130111	105926410	29608337	197	30231											
SHOC2	8036	broad.mit.edu	37	chr10	112724821	112724821	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactacctgctgaaattggTaagaggccttggattattat	9	7	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112724821	A	A	112724821	5	1	12	1	0	0	0	0	0	0	1	0	14400	1652	57	5	707	5	SHOC2	10	112724821	Splice_Site	SNP	T	TCGA-05-4402-01A-01D-1265-08	6798411	112724821	22809926	198	30232											
SHOC2	8036	broad.mit.edu	37	chr10	112764399	112764399	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtgaaactgaatagtttGaccttagctagaaattgctt	8	6	0	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112764399	C	C	112764399	3	2	12	1	0	0	0	0	1	0	0	0	14400	1281	45	4	1022	4	SHOC2	10	112764399	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	39578	112764399	22770348	199	30233											
ACSL5	51703	broad.mit.edu	37	chr10	114172844	114172844	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgaaggggttgtttgcctCagcccacctcctgaattcct	9	13	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114172844	T	T	114172844	1	4	12	0	1	0	0	0	0	0	0	0	180	841	29	4		4	ACSL5	10	114172844	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1408445	114172844	21361903	200	30234											
GLRX3	10539	broad.mit.edu	37	chr10	131973145	131973145	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagtgttgaatatgaaaCattcgatatattggaggatg	11	3	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131973145	T	T	131973145	3	4	12	1	0	0	0	0	1	0	0	0	6525	478	17	4	873	4	GLRX3	10	131973145	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	17800301	131973145	3561602	201	30235											
MTG1	92170	broad.mit.edu	37	chr10	135233655	135233655	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcggggccaccccccggctGagactttgccctgaacttgt	12	15	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135233655	C	C	135233655	3	2	12	1	0	0	0	0	1	0	0	0	10020	1291	45	4	1033	4	MTG1	10	135233655	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	3260510	135233655	301092	202	30236											
TNNI2	7136	broad.mit.edu	37	chr11	1862710	1862710	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacctgcgagacgtgggtGactggaggaagaacatcgag	18	7	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1862710	T	T	1862710	3	4	12	1	0	0	0	0	1	0	0	0	16450	1290	45	3	519	3	TNNI2	11	1862710	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08		1862710	133143806	203	30237											
OR51D1	390038	broad.mit.edu	37	chr11	4661548	4661548	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcccactgcccttcatcctCaagtggttgtcctactgcca	6	16	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4661548	G	G	4661548	2	3	12	1	0	0	0	0	0	0	0	1	11187	813	29	4		4	OR51D1	11	4661548	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	2798838	4661548	130344968	204	30238											
RRP8	23378	broad.mit.edu	37	chr11	6623441	6623441	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaagagctggcggcgcttgGagccctggaggaaaacaggg	17	10	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6623441	C	C	6623441	3	2	12	1	0	0	0	0	1	0	0	0	13801	1174	41	4	1290	4	RRP8	11	6623441	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1961893	6623441	128383075	205	30239											
OR10A5	144124	broad.mit.edu	37	chr11	6867517	6867517	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgagatctacgccatcGtcggaaccattctggtggtc	11	10	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6867517	C	C	6867517	3	2	12	1	0	0	0	0	1	0	0	0	10987	1145	40	4	606	4	OR10A5	11	6867517	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	244076	6867517	128138999	206	30240											
ASCL3	56676	broad.mit.edu	37	chr11	8959371	8959371	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgatggcggagctgggcgTagccttcattgacacatttc	13	9	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8959371	G	G	8959371	3	3	12	1	0	0	0	0	1	0	0	0	1039	1638	57	5	211	5	ASCL3	11	8959371	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	2091854	8959371	126047145	207	30241											
IPO7	10527	broad.mit.edu	37	chr11	9446815	9446815	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaatacttctgaaggtattCtttagtgtgtttgtatgtgc	10	4	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9446815	T	T	9446815	1	4	12	0	1	0	0	0	0	0	0	0	7867	928	32	4		4	IPO7	11	9446815	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	487444	9446815	125559701	208	30242											
TPH1	7166	broad.mit.edu	37	chr11	18048086	18048086	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctcacatattgagtgcAgtgaaaaactcgaaaggcta	10	7	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18048086	G	G	18048086	3	3	12	1	0	0	0	0	1	0	0	0	16525	188	7	5	600	5	TPH1	11	18048086	Missense_Mutation	SNP	A	TCGA-05-4402-01A-01D-1265-08	8601271	18048086	116958430	209	30243											
GTF2H1	2965	broad.mit.edu	37	chr11	18354719	18354719	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggcagaaagaattgcttGggcacctgaaggcaaagata	12	7	0	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18354719	A	A	18354719	4	1	12	1	0	0	0	0	0	1	0	0	6925	1357	47	4	100	4	GTF2H1	11	18354719	Nonsense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	306633	18354719	116651797	210	30244											
FIBIN	387758	broad.mit.edu	37	chr11	27016133	27016133	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctgtgtcaaggctacttCgatggccccctctacccaga	8	16	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016133	T	T	27016133	2	4	12	1	0	0	0	0	0	0	0	1	5942	883	31	4		4	FIBIN	11	27016133	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	8661414	27016133	107990383	211	30245											
LIN7C	55327	broad.mit.edu	37	chr11	27521161	27521161	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatatgacttttatttacttCagttctttcatcttttgttt	3	6	4	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27521161	T	T	27521161	1	4	12	0	1	0	0	0	0	0	0	0	8885	841	29	4		4	LIN7C	11	27521161	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	505028	27521161	107485355	212	30246											
COMMD9	29099	broad.mit.edu	37	chr11	36293446	36293446	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagactcagattggctgaTtggaatcatgaacattcatg	10	7	3	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36293446	C	C	36293446	1	2	12	0	1	0	0	0	0	0	0	0	3755	1508	52	5		5	COMMD9	11	36293446	Intron	SNP	T	TCGA-05-4402-01A-01D-1265-08	8772285	36293446	98713070	213	30247											
EXT2	2132	broad.mit.edu	37	chr11	44102533	44102533	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatgtgggtttccatagttCtgtgttgcctctgttcccat	9	10	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44102533	A	A	44102533	1	1	12	0	1	0	0	0	0	0	0	0	5367	928	32	3		3	EXT2	11	44102533	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	7809087	44102533	90903983	214	30248											
MYBPC3	4607	broad.mit.edu	37	chr11	47362583	47362583	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacgaagtcaatcttgaccTctgcaagagaaggaagagca	11	8	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47362583	C	C	47362583	3	2	12	1	0	0	0	0	1	0	0	0	10107	1565	54	5	1986	5	MYBPC3	11	47362583	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	3260050	47362583	87643933	215	30249											
CELF1	10658	broad.mit.edu	37	chr11	47497088	47497088	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccattccttggttggaggaaGagaaggattaatatactaga	11	5	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47497088	C	C	47497088	1	2	12	0	1	0	0	0	0	0	0	0	3245	957	33	4		4	CELF1	11	47497088	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	134505	47497088	87509428	216	30250											
OR4X2	119764	broad.mit.edu	37	chr11	48266743	48266743	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgttcttgtacacagcaAttgtgctggggaatttcctc	9	9	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48266743	C	C	48266743	3	2	12	1	0	0	0	0	1	0	0	0	11179	101	4	5	90	5	OR4X2	11	48266743	Missense_Mutation	SNP	A	TCGA-05-4402-01A-01D-1265-08	769655	48266743	86739773	217	30251											
PRG3	10394	broad.mit.edu	37	chr11	57144338	57144338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggcttagaaggagcagacGaagggcagttgcttgtcgca	15	8	0	2	rs141251058	byFrequency	TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57144338	T	T	57144338	3	4	12	1	0	0	0	0	1	0	0	0	12586	1049	37	3	18	3	PRG3	11	57144338	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	8877595	57144338	77862178	218	30252											
PRG2	5553	broad.mit.edu	37	chr11	57156549	57156549	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtctggcacccagggatGcccaccacttttactgtgtc	10	14	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57156549	A	A	57156549	2	1	12	1	0	0	0	0	0	0	0	1	12585	1306	46	4		4	PRG2	11	57156549	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	12211	57156549	77849967	219	30253											
OR9Q2	219957	broad.mit.edu	37	chr11	57958704	57958704	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcctcccacctcactgccGtcgctcttttctttggcacc	7	19	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57958704	A	A	57958704	3	1	12	1	0	0	0	0	1	0	0	0	11350	1145	40	4	744	4	OR9Q2	11	57958704	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	802155	57958704	77047812	220	30254											
SLC22A8	9376	broad.mit.edu	37	chr11	62760896	62760896	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagaggcagtgactgacCagttttccaggtcttcgata	12	10	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62760896	T	T	62760896	4	4	12	1	0	0	0	0	0	1	0	0	14574	608	21	4	107	4	SLC22A8	11	62760896	Nonsense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	4802192	62760896	72245620	221	30255											
CCND1	595	broad.mit.edu	37	chr11	69462753	69462753	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctccttccctctctccttCtgcctcagatgtgaagttca	6	16	4	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69462753	G	G	69462753	1	3	12	0	1	0	0	0	0	0	0	0	2946	928	32	4		4	CCND1	11	69462753	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	6701857	69462753	65543763	222	30256											
FZD4	8322	broad.mit.edu	37	chr11	86662507	86662507	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcttgaccatcagtctttCtaacttgtctgtctttgtcc	5	11	6	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86662507	G	G	86662507	3	3	12	1	0	0	0	0	1	0	0	0	6192	922	32	4	326	4	FZD4	11	86662507	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	17199754	86662507	48344009	223	30257											
TYR	7299	broad.mit.edu	37	chr11	88911903	88911903	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaccccacaaatcctaActtactcagcccagcatcat	3	17	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88911903	C	C	88911903	3	2	12	1	0	0	0	0	1	0	0	0	16939	43	2	5	784	5	TYR	11	88911903	Missense_Mutation	SNP	A	TCGA-05-4402-01A-01D-1265-08	2249396	88911903	46094613	224	30258											
ARHGEF12	23365	broad.mit.edu	37	chr11	120322385	120322385	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaattccatgtcttctgtaGcttcaggggcctctttttcc	7	13	4	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120322385	C	C	120322385	3	2	12	1	0	0	0	0	1	0	0	0	899	971	34	4	2094	4	ARHGEF12	11	120322385	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	31410482	120322385	14684131	225	30259											
APLP2	334	broad.mit.edu	37	chr11	130011390	130011390	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgacattctcatgactgtttCaggtcattgacgagactctg	9	10	4	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130011390	G	G	130011390	1	3	12	0	1	0	0	0	0	0	0	0	781	841	29	4		4	APLP2	11	130011390	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	9689005	130011390	4995126	226	30260											
PLEKHG6	55200	broad.mit.edu	37	chr12	6424195	6424195	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaccaaggcccatgagctgGaggtgaggctgcacactttc	12	12	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6424195	A	A	6424195	3	1	12	1	0	0	0	0	1	0	0	0	12169	1175	41	4	375	4	PLEKHG6	12	6424195	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08		6424195	127427700	227	30261											
C12orf53	196500	broad.mit.edu	37	chr12	6804901	6804901	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagtggtcacccccagcctCacccagtcactcccaacatc	5	21	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6804901	G	G	6804901	1	3	12	0	1	0	0	0	0	0	0	0	1711	841	29	4		4	C12orf53	12	6804901	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	380706	6804901	127046994	228	30262											
AICDA	57379	broad.mit.edu	37	chr12	8757756	8757756	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctaactcattcattccgcatCgcaatcccgaatgcgggctg	8	14	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8757756	G	G	8757756	1	3	12	0	1	0	0	0	0	0	0	0	422	899	31	4		4	AICDA	12	8757756	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1952855	8757756	125094139	229	30263											
A2M	2	broad.mit.edu	37	chr12	9232408	9232408	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatggcagagcctaatatgTctcctagagaatgggagaga	13	7	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9232408	C	C	9232408	3	2	12	1	0	0	0	0	1	0	0	0	4	1667	58	5	1618	5	A2M	12	9232408	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	474652	9232408	124619487	230	30264											
ETV6	2120	broad.mit.edu	37	chr12	12037505	12037506	+	Frame_Shift_Del	DEL	TG	-	-													tcccaacggactggctcgacTgtggggaaaccataaggtaa							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12037506	-	-	12037505	7	5	12	1	0	1	0	1	0	0	0	0	5325	1580	55	0	1158	0	ETV6	12	12037505	Frame_Shift_Del	DEL	TG	TCGA-05-4402-01A-01D-1265-08	2805097	12037505	121814390	231	30265											
KRT76	51350	broad.mit.edu	37	chr12	53163420	53163420	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttatgagtcaataaccaaaGagttgagagttcacaacttt	8	6	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53163420	C	C	53163420	1	2	12	0	1	0	0	0	0	0	0	0	8560	957	33	4		4	KRT76	12	53163420	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	41125915	53163420	80688475	232	30266											
OR6C4	341418	broad.mit.edu	37	chr12	55945365	55945365	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctggcctccatgtcttatGatcgttatgtggccatctgc	9	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55945365	C	C	55945365	3	2	12	1	0	0	0	0	1	0	0	0	11287	1290	45	4	357	4	OR6C4	12	55945365	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	2781945	55945365	77906530	233	30267											
SPRYD4	283377	broad.mit.edu	37	chr12	56862988	56862988	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctggcagacacagcggtcaCcagtggcagacactactggg	14	12	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56862988	G	G	56862988	3	3	12	1	0	0	0	0	1	0	0	0	15228	507	18	4	257	4	SPRYD4	12	56862988	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	917623	56862988	76988907	234	30268											
LRP1	4035	broad.mit.edu	37	chr12	57594926	57594926	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcggagatggggaggatgaGagggactgccgtgagtgtca	20	5	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57594926	A	A	57594926	2	1	12	1	0	0	0	0	0	0	0	1	9038	933	33	4		4	LRP1	12	57594926	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	731938	57594926	76256969	235	30269											
DCTN2	10540	broad.mit.edu	37	chr12	57926926	57926926	+	Intron	SNP	G	A	A													ccctgtaactgaagccctttGatgactcctcccaggcttat							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57926926	A	A	57926926	1	1	12	0	1	0	0	0	0	0	0	0	4340	1305	45	4		4	DCTN2	12	57926926	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	332000	57926926	75924969	236	30270	179	2									
DCTN2	10540	broad.mit.edu	37	chr12	57926929	57926929	+	Intron	SNP	G	A	A													tgtaactgaagccctttgatGactcctcccaggcttatgtg							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57926929	A	A	57926929	1	1	12	0	1	0	0	0	0	0	0	0	4340	1305	45	4		4	DCTN2	12	57926929	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	3	57926929	75924966	237	30271	179	2									
DCTN2	10540	broad.mit.edu	37	chr12	57927771	57927771	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaacttgtcctgctcaggccGagaatgtagttcataagtga	11	8	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57927771	A	A	57927771	3	1	12	1	0	0	0	0	1	0	0	0	4340	1057	37	4	603	4	DCTN2	12	57927771	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	842	57927771	75924124	238	30272											
IL22	50616	broad.mit.edu	37	chr12	68642540	68642540	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taattgttatttctagcaggGaaagggggttagttattcat	11	3	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68642540	T	T	68642540	1	4	12	0	1	0	0	0	0	0	0	0	7742	1189	41	3		3	IL22	12	68642540	3'UTR	SNP	G	TCGA-05-4402-01A-01D-1265-08	10714769	68642540	65209355	239	30273											
ACACB	32	broad.mit.edu	37	chr12	109680251	109680251	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctggtccagatcatgtttCactccttcggcaacaagcaa	7	12	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109680251	A	A	109680251	3	1	12	1	0	0	0	0	1	0	0	0	107	826	29	3	5174	3	ACACB	12	109680251	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	41037711	109680251	24171644	240	30274											
ALDH2	217	broad.mit.edu	37	chr12	112230500	112230500	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgtgcaggaggacatctatGatgagtttgtggagcggagc	16	6	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112230500	A	A	112230500	3	1	12	1	0	0	0	0	1	0	0	0	496	1290	45	4	1031	4	ALDH2	12	112230500	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	2550249	112230500	21621395	241	30275											
NAA25	80018	broad.mit.edu	37	chr12	112528435	112528435	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctacctactgtatccattCaaatcatgagtgagaaatca	5	9	4	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112528435	T	T	112528435	1	4	12	0	1	0	0	0	0	0	0	0	10215	841	29	4		4	NAA25	12	112528435	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	297935	112528435	21323460	242	30276											
TMEM132B	114795	broad.mit.edu	37	chr12	126138200	126138200	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggattattctgttactgtCtcatcattggatgaaatggt	9	5	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126138200	T	T	126138200	2	4	12	1	0	0	0	0	0	0	0	1	16169	900	32	4		4	TMEM132B	12	126138200	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	13609765	126138200	7713695	243	30277											
TMEM132D	121256	broad.mit.edu	37	chr12	129558265	129558265	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcgatgcggactccaggcctCgccgccgagccggggtcatt	14	15	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129558265	G	G	129558265	1	3	12	0	1	0	0	0	0	0	0	0	16170	899	31	4		4	TMEM132D	12	129558265	3'UTR	SNP	C	TCGA-05-4402-01A-01D-1265-08	3420065	129558265	4293630	244	30278											
TNFRSF19	55504	broad.mit.edu	37	chr13	24200845	24200845	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtattttcctttctcttctaGattttataggaagacgaaac	6	7	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24200845	C	C	24200845	5	2	12	1	0	0	0	0	0	0	1	0	16415	956	33	4	373	4	TNFRSF19	13	24200845	Splice_Site	SNP	G	TCGA-05-4402-01A-01D-1265-08		24200845	90969033	245	30279											
ATP12A	479	broad.mit.edu	37	chr13	25284699	25284699	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgatcatcaggaaaacccgGaggaattccatcttccagca	8	12	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25284699	C	C	25284699	2	2	12	1	0	0	0	0	0	0	0	1	1126	1161	41	4		4	ATP12A	13	25284699	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	1083854	25284699	89885179	246	30280											
TRPC4	7223	broad.mit.edu	37	chr13	38357157	38357157	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctccgacgacttcttttCtgatagcatgtaatagagca	8	10	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38357157	G	G	38357157	3	3	12	1	0	0	0	0	1	0	0	0	16705	913	32	4	2674	4	TRPC4	13	38357157	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	13072458	38357157	76812721	247	30281											
MYO16	23026	broad.mit.edu	37	chr13	109614065	109614065	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaattttgtagatctaccAgtagatggcgacatagtaca	9	7	1	2	rs116020136	by1000genomes	TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109614065	C	C	109614065	1	2	12	0	1	0	0	0	0	0	0	0	10158	203	7	5		5	MYO16	13	109614065	Intron	SNP	A	TCGA-05-4402-01A-01D-1265-08	71256908	109614065	5555813	248	30282											
OR4M1	441670	broad.mit.edu	37	chr14	20248374	20248374	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctgttagtgacagaaaacGtatgacaattttgaaagcag	9	5	1	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20248374	C	C	20248374	1	2	12	0	1	0	0	0	0	0	0	0	11169	1160	40	4		4	OR4M1	14	20248374	5'Flank	SNP	G	TCGA-05-4402-01A-01D-1265-08		20248374	87101166	249	30283											
NEDD8	4738	broad.mit.edu	37	chr14	24701524	24701524	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaattgctgctcctaccgctCcggtcgccgctgccgccctc	9	19	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24701524	G	G	24701524	1	3	12	0	1	0	0	0	0	0	0	0	10407	870	30	4		4	NEDD8	14	24701524	5'UTR	SNP	C	TCGA-05-4402-01A-01D-1265-08	4453150	24701524	82648016	250	30284											
HECTD1	25831	broad.mit.edu	37	chr14	31602521	31602521	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatttccaatccaggcctCtgataacacgagctcctgga	8	14	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31602521	T	T	31602521	3	4	12	1	0	0	0	0	1	0	0	0	7106	913	32	4	4067	4	HECTD1	14	31602521	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	6900997	31602521	75747019	251	30285											
AKAP6	9472	broad.mit.edu	37	chr14	33293407	33293407	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaggtcaccaattacataGaagagaaaagcagcactcca	10	9	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33293407	C	C	33293407	3	2	12	1	0	0	0	0	1	0	0	0	455	943	33	4	6434	4	AKAP6	14	33293407	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1690886	33293407	74056133	252	30286											
RALGAPA1	253959	broad.mit.edu	37	chr14	36190907	36190907	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacataccgacagttttttgCcgtactatactcctcgcctt	5	13	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36190907	T	T	36190907	2	4	12	1	0	0	0	0	0	0	0	1	13121	726	26	4		4	RALGAPA1	14	36190907	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	2897500	36190907	71158633	253	30287											
GCH1	2643	broad.mit.edu	37	chr14	55312565	55312565	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aatttgttttgtaaggcgctCctgaactgtggatgtgataa	11	5	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55312565	G	G	55312565	3	3	12	1	0	0	0	0	1	0	0	0	6353	864	30	4	313	4	GCH1	14	55312565	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	19121658	55312565	52036975	254	30288											
SYNE2	23224	broad.mit.edu	37	chr14	64560012	64560012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctagacaatgaaaatagtcCattaatctgcttagattatg	7	6	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64560012	A	A	64560012	1	1	12	0	1	0	0	0	0	0	0	0	15565	609	21	2		2	SYNE2	14	64560012	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	9247447	64560012	42789528	255	30289											
EXD2	55218	broad.mit.edu	37	chr14	69697274	69697274	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgacaagtcccttctacttCgttgcagcaactgggatgct	9	11	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69697274	G	G	69697274	3	3	12	1	0	0	0	0	1	0	0	0	5340	884	31	4	307	4	EXD2	14	69697274	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	5137262	69697274	37652266	256	30290											
TMEM63C	57156	broad.mit.edu	37	chr14	77685839	77685839	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgcttttcctggcctgtAgctcgtccttgtggtttact	9	11	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77685839	G	G	77685839	5	3	12	1	0	0	0	0	0	0	1	0	16315	434	15	5	155	5	TMEM63C	14	77685839	Splice_Site	SNP	A	TCGA-05-4402-01A-01D-1265-08	7988565	77685839	29663701	257	30291											
SERPINA5	5104	broad.mit.edu	37	chr14	95058516	95058516	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctagtgttcaacaggccCtttctgatgttcattgtgga	11	8	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95058516	A	A	95058516	2	1	12	1	0	0	0	0	0	0	0	1	14205	668	24	2		2	SERPINA5	14	95058516	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	17372677	95058516	12291024	258	30292											
MKRN3	7681	broad.mit.edu	37	chr15	23811198	23811198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccagtccgttgccaagccGaagcagcggcatttggacaa	12	13	0	0	rs140349866		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23811198	T	T	23811198	3	4	12	1	0	0	0	0	1	0	0	0	9701	1058	37	3	271	3	MKRN3	15	23811198	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08		23811198	78720194	259	30293											
OCA2	4948	broad.mit.edu	37	chr15	28260068	28260068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccggatgctgatggacaCcgtctctctgcagaacgaaa	12	12	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28260068	A	A	28260068	3	1	12	1	0	0	0	0	1	0	0	0	10910	507	18	3	1682	3	OCA2	15	28260068	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	4448870	28260068	74271324	260	30294											
FRMD5	84978	broad.mit.edu	37	chr15	44177839	44177839	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttctccagagaagggtctGaaaatagatccataatggtt	10	6	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44177839	C	C	44177839	1	2	12	0	1	0	0	0	0	0	0	0	6113	1305	45	4		4	FRMD5	15	44177839	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	15917771	44177839	58353553	261	30295											
SPG11	80208	broad.mit.edu	37	chr15	44914530	44914530	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcagaaaaataatttttttCttttaaaatttcaaccttga	2	5	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44914530	A	A	44914530	4	1	12	1	0	0	0	0	0	1	0	0	15159	922	32	3	5111	3	SPG11	15	44914530	Nonsense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	736691	44914530	57616862	262	30296											
MYO5A	4644	broad.mit.edu	37	chr15	52645805	52645805	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaaactccccattaccttGagtgactcatattccagttc	5	13	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52645805	C	C	52645805	2	2	12	1	0	0	0	0	0	0	0	1	10172	1277	45	4		4	MYO5A	15	52645805	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	7731275	52645805	49885587	263	30297											
HERC1	8925	broad.mit.edu	37	chr15	63958713	63958713	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagaacctaaatatcactaGataccgtgagtaaaaagtgt	7	6	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63958713	C	C	63958713	1	2	12	0	1	0	0	0	0	0	0	0	7124	957	33	4		4	HERC1	15	63958713	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	11312908	63958713	38572679	264	30298											
CHTF18	63922	broad.mit.edu	37	chr16	844021	844021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcctgtgcttttaacaCgggtccatctagcttcagca	10	12	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	844021	A	A	844021	1	1	12	0	1	0	0	0	0	0	0	0	3445	551	19	3		3	CHTF18	16	844021	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08		844021	89510732	265	30299											
EMP2	2013	broad.mit.edu	37	chr16	10637633	10637633	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcaaactgcaacacatgtGagaattgcctgaggagctta	9	9	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10637633	C	C	10637633	1	2	12	0	1	0	0	0	0	0	0	0	5144	1305	45	4		4	EMP2	16	10637633	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	9793612	10637633	79717120	266	30300											
SNX29	92017	broad.mit.edu	37	chr16	12492472	12492472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgttgagacccacacaaGgttgatgtggttcttgtaga	11	8	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12492472	T	T	12492472	1	4	12	0	1	0	0	0	0	0	0	0	15012	1015	35	2		2	SNX29	16	12492472	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	1854839	12492472	77862281	267	30301											
NOMO2	283820	broad.mit.edu	37	chr16	18555015	18555015	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcacttcggacagagccaGacacattgtagccagcaact	8	13	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18555015	C	C	18555015	3	2	12	1	0	0	0	0	1	0	0	0	10627	942	33	4	3252	4	NOMO2	16	18555015	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	6062543	18555015	71799738	268	30302											
ARL2BP	23568	broad.mit.edu	37	chr16	57279960	57279960	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttttttaatgcattatttGaaatagcacctaatccaggc	5	7	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57279960	C	C	57279960	1	2	12	0	1	0	0	0	0	0	0	0	938	1305	45	4		4	ARL2BP	16	57279960	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	38724945	57279960	33074793	269	30303											
CTCF	10664	broad.mit.edu	37	chr16	67670778	67670778	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agttgttcatctctgctctgGaggctggcgtcttctccgag	12	11	5	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67670778	C	C	67670778	1	2	12	0	1	0	0	0	0	0	0	0	4034	1189	41	4		4	CTCF	16	67670778	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	10390818	67670778	22683975	270	30304											
AARS	16	broad.mit.edu	37	chr16	70295154	70295154	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactcgtgtatataacttctCtttacatatgtaaattgcac	4	8	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70295154	G	G	70295154	1	3	12	0	1	0	0	0	0	0	0	0	19	928	32	4		4	AARS	16	70295154	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	2624376	70295154	20059599	271	30305											
PHLPP2	23035	broad.mit.edu	37	chr16	71713353	71713353	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attacaggaaaggttgagctCagtcagggtagagatctcgc	13	7	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71713353	T	T	71713353	3	4	12	1	0	0	0	0	1	0	0	0	11950	835	29	4	3047	4	PHLPP2	16	71713353	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	1418199	71713353	18641400	272	30306											
OSGIN1	29948	broad.mit.edu	37	chr16	83999118	83999118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacatcccggtgatccatGccttccgccgggccgtggac	11	16	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83999118	T	T	83999118	3	4	12	1	0	0	0	0	1	0	0	0	11383	1319	46	3	1215	3	OSGIN1	16	83999118	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	12285765	83999118	6355635	273	30307											
SPG7	6687	broad.mit.edu	37	chr16	89611237	89611237	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggccgcccccactcgctctGagtggtctggcctctcctct	11	18	4	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89611237	A	A	89611237	1	1	12	0	1	0	0	0	0	0	0	0	15162	1305	45	4		4	SPG7	16	89611237	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	5612119	89611237	743516	274	30308											
TP53	7157	broad.mit.edu	37	chr17	7578397	7578412	+	Frame_Shift_Del	DEL	TGGGGGCAGCGCCTCA	-	-													tatctgagcagcgctcatggTgggggcagcgcctcacaacc					rs68130327		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7578412	-	-	7578397	7	5	12	1	0	1	0	1	0	0	0	0	16505	1696	59	0	765	0	TP53	17	7578397	Frame_Shift_Del	DEL	TGGGGGCAGCGCCTCA	TCGA-05-4402-01A-01D-1265-08		7578397	73616813	275	30309											
C17orf68	80169	broad.mit.edu	37	chr17	8132567	8132567	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagtcctcttggtcccatCacatccctctggcactccat	5	16	3	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8132567	A	A	8132567	1	1	12	0	1	0	0	0	0	0	0	0	1892	841	29	3		3	C17orf68	17	8132567	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	554170	8132567	73062643	276	30310											
C17orf39	79018	broad.mit.edu	37	chr17	17948453	17948453	+	Intron	DEL	C	-	-													tgacaggctgtgtatcctttCttttcagcacgtggacacgg							TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17948453	-	-	17948453	6	5	12	0	1	1	0	1	0	0	0	0	1871	928	32	0		0	C17orf39	17	17948453	Intron	DEL	C	TCGA-05-4402-01A-01D-1265-08	9815886	17948453	63246757	277	30311											
C17orf39	79018	broad.mit.edu	37	chr17	17948480	17948480	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcacgtggacacggggaactCttacctttgtgggtacttga	13	9	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17948480	G	G	17948480	3	3	12	1	0	0	0	0	1	0	0	0	1871	913	32	4	464	4	C17orf39	17	17948480	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	27	17948480	63246730	278	30312											
ALDH3A1	218	broad.mit.edu	37	chr17	19641686	19641686	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggccttcatcattcatcaGaggcctcaccaggcaagagc	9	14	5	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19641686	C	C	19641686	3	2	12	1	0	0	0	0	1	0	0	0	497	933	33	4	72	4	ALDH3A1	17	19641686	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1693206	19641686	61553524	279	30313											
SPAG5	10615	broad.mit.edu	37	chr17	26906506	26906506	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctccatgcctggggtctctGaaagagaaagtcccagatag	11	11	1	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906506	A	A	26906506	1	1	12	0	1	0	0	0	0	0	0	0	15097	1305	45	4		4	SPAG5	17	26906506	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	7264820	26906506	54288704	280	30314											
SPAG5	10615	broad.mit.edu	37	chr17	26906892	26906892	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatgggagagggcccctctGatgatccaggcaggggtcta	15	9	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906892	A	A	26906892	1	1	12	0	1	0	0	0	0	0	0	0	15097	1305	45	4		4	SPAG5	17	26906892	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	386	26906892	54288318	281	30315											
SLC6A4	6532	broad.mit.edu	37	chr17	28542583	28542583	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctccacactagctgactttCactcacgccactttcaagct	4	17	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28542583	T	T	28542583	1	4	12	0	1	0	0	0	0	0	0	0	14800	841	29	4		4	SLC6A4	17	28542583	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	1635691	28542583	52652627	282	30316											
CNP	1267	broad.mit.edu	37	chr17	40125572	40125572	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccaagacgactggggcccGggtggagttaagcgagcagc	16	11	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40125572	A	A	40125572	3	1	12	1	0	0	0	0	1	0	0	0	3658	1116	39	4	910	4	CNP	17	40125572	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	11582989	40125572	41069638	283	30317											
ABCC3	8714	broad.mit.edu	37	chr17	48738458	48738458	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggacctgctctccttcatCaatccacagctgctcaggtc	7	16	4	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48738458	G	G	48738458	3	3	12	1	0	0	0	0	1	0	0	0	54	816	29	4	1011	4	ABCC3	17	48738458	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	8612886	48738458	32456752	284	30318											
AKAP1	8165	broad.mit.edu	37	chr17	55193449	55193449	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggcccaggcgttccacGcactctgctccctaccctgc	8	21	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55193449	A	A	55193449	1	1	12	0	1	0	0	0	0	0	0	0	445	1102	38	4		4	AKAP1	17	55193449	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	6454991	55193449	26001761	285	30319											
USP32	84669	broad.mit.edu	37	chr17	58297004	58297004	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttacctctcggtaaatgctGaggaaacattctcaggctca	9	10	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58297004	A	A	58297004	1	1	12	0	1	0	0	0	0	0	0	0	17190	1305	45	4		4	USP32	17	58297004	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	3103555	58297004	22898206	286	30320											
TLK2	11011	broad.mit.edu	37	chr17	60650572	60650572	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacaacgtcttttatatctCtaggcaacaggaaaggataa	8	7	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60650572	G	G	60650572	1	3	12	0	1	0	0	0	0	0	0	0	16067	928	32	4		4	TLK2	17	60650572	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	2353568	60650572	20544638	287	30321											
CCDC47	57003	broad.mit.edu	37	chr17	61843460	61843460	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactatgtcctcctcatcctCaaaatcatcaaacttggctt	3	13	4	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61843460	A	A	61843460	4	1	12	1	0	0	0	0	0	1	0	0	2846	835	29	3	1423	3	CCDC47	17	61843460	Nonsense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	1192888	61843460	19351750	288	30322											
SMURF2	64750	broad.mit.edu	37	chr17	62559100	62559100	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccgactagaagtaaacataGatgttattattaaagtatat	7	4	0	2	rs28735209		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62559100	C	C	62559100	1	2	12	0	1	0	0	0	0	0	0	0	14934	957	33	4		4	SMURF2	17	62559100	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	715640	62559100	18636110	289	30323											
AZI1	22994	broad.mit.edu	37	chr17	79168681	79168681	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcccacctcggacagtgAcctccttgatcttcttggtt	10	13	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79168681	G	G	79168681	3	3	12	1	0	0	0	0	1	0	0	0	1245	275	10	5	1174	5	AZI1	17	79168681	Missense_Mutation	SNP	A	TCGA-05-4402-01A-01D-1265-08	16609581	79168681	2026529	290	30324											
DSC1	1823	broad.mit.edu	37	chr18	28712647	28712647	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacacagaaacatgtaaacaGaatacctaaaaagcaaaaaa	5	7	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28712647	A	A	28712647	2	1	12	1	0	0	0	0	0	0	0	1	4805	933	33	4		4	DSC1	18	28712647	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08		28712647	49364601	291	30325											
MOCOS	55034	broad.mit.edu	37	chr18	33775270	33775270	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgttctcccagagccagCtcgaaagcttcactagtgat	8	13	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33775270	T	T	33775270	3	4	12	1	0	0	0	0	1	0	0	0	9783	797	28	4	199	4	MOCOS	18	33775270	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	5062623	33775270	44301978	292	30326											
RNF152	220441	broad.mit.edu	37	chr18	59483267	59483267	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctcctggggagccccacCttgcagaggctgctgttcag	13	15	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59483267	T	T	59483267	3	4	12	1	0	0	0	0	1	0	0	0	13564	681	24	4	185	4	RNF152	18	59483267	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	25707997	59483267	18593981	293	30327											
MUC16	94025	broad.mit.edu	37	chr19	9057667	9057667	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctggagacatcgtggactGatcagagtcagggatgtgta	15	6	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9057667	A	A	9057667	4	1	12	1	0	0	0	0	0	1	0	0	10067	1299	45	4	14072	4	MUC16	19	9057667	Nonsense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08		9057667	50071316	294	30328											
MAN2B1	4125	broad.mit.edu	37	chr19	12758247	12758247	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatctccttctcaattttgCccttctcaccctcaagttca	3	16	5	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12758247	T	T	12758247	1	4	12	0	1	0	0	0	0	0	0	0	9308	754	26	4		4	MAN2B1	19	12758247	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	3700580	12758247	46370736	295	30329											
ZNF99	7652	broad.mit.edu	37	chr19	22941400	22941400	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttatgttttctaagggctgaGaaacgcttaaaagctttgcc	9	7	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22941400	A	A	22941400	2	1	12	1	0	0	0	0	0	0	0	1	18333	933	33	4		4	ZNF99	19	22941400	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	10183153	22941400	36187583	296	30330											
ZNF536	9745	broad.mit.edu	37	chr19	30936293	30936293	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcagtcgggattttttGtcacacgggctgaaccagac	12	9	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30936293	A	A	30936293	2	1	12	1	0	0	0	0	0	0	0	1	18101	1368	48	4		4	ZNF536	19	30936293	Silent	SNP	G	TCGA-05-4402-01A-01D-1265-08	7994893	30936293	28192690	297	30331											
KIRREL2	84063	broad.mit.edu	37	chr19	36353526	36353526	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctgagccccgccccggctCccgaggccccagccccacac	10	24	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36353526	T	T	36353526	1	4	12	0	1	0	0	0	0	0	0	0	8396	870	30	4		4	KIRREL2	19	36353526	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	5417233	36353526	22775457	298	30332											
ALKBH6	84964	broad.mit.edu	37	chr19	36501474	36501474	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtctgggggcccacctgttCtgtagggtcatcgtcctctg	13	12	4	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36501474	T	T	36501474	3	4	12	1	0	0	0	0	1	0	0	0	531	922	32	4	276	4	ALKBH6	19	36501474	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	147948	36501474	22627509	299	30333											
SUPT5H	6829	broad.mit.edu	37	chr19	39957426	39957426	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgggctgggtccccagggCcggtgtgtagaatgtgcctt	17	10	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39957426	G	G	39957426	1	3	12	0	1	0	0	0	0	0	0	0	15517	754	26	4		4	SUPT5H	19	39957426	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	3455952	39957426	19171557	300	30334											
ZNF227	7770	broad.mit.edu	37	chr19	44740468	44740468	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcagagagtccatactggaGagaagccatacaaatgtggt	11	7	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44740468	C	C	44740468	3	2	12	1	0	0	0	0	1	0	0	0	17907	943	33	4	1899	4	ZNF227	19	44740468	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	4783042	44740468	14388515	301	30335											
NLRP13	126204	broad.mit.edu	37	chr19	56424091	56424091	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatctctcacaaaccaggtCttgatcgtgatcagtaaggt	9	9	4	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56424091	G	G	56424091	3	3	12	1	0	0	0	0	1	0	0	0	10570	912	32	4	2065	4	NLRP13	19	56424091	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	11683623	56424091	2704892	302	30336											
CDC25B	994	broad.mit.edu	37	chr20	3783732	3783732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcctgacctgccggaaCcaacccccatgacctcctac	7	20	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3783732	A	A	3783732	1	1	12	0	1	0	0	0	0	0	0	0	3093	522	18	3		3	CDC25B	20	3783732	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08		3783732	59241788	303	30337											
GPCPD1	56261	broad.mit.edu	37	chr20	5529991	5529991	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactactgaatgtgaaaacaGagaagctgttacacatatag	9	6	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5529991	C	C	5529991	1	2	12	0	1	0	0	0	0	0	0	0	6668	957	33	4		4	GPCPD1	20	5529991	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	1746259	5529991	57495529	304	30338											
NAA20	51126	broad.mit.edu	37	chr20	20006166	20006166	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatcagtgataacctaAatatttcatgtaatggtatg	6	4	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20006166	G	G	20006166	1	3	12	0	1	0	0	0	0	0	0	0	10214	29	1	5		5	NAA20	20	20006166	Intron	SNP	A	TCGA-05-4402-01A-01D-1265-08	14476175	20006166	43019354	305	30339											
NCOA6	23054	broad.mit.edu	37	chr20	33338106	33338106	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggaccatctggccctggGagggcacgatttgctggtgc	16	11	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33338106	A	A	33338106	3	1	12	1	0	0	0	0	1	0	0	0	10328	1174	41	4	4327	4	NCOA6	20	33338106	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	13331940	33338106	29687414	306	30340											
EDEM2	55741	broad.mit.edu	37	chr20	33722746	33722746	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggcatgccagtgggggtcTgaaaggctgaacaatcgaca	14	8	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33722746	A	A	33722746	3	1	12	1	0	0	0	0	1	0	0	0	4952	1580	55	5	1263	5	EDEM2	20	33722746	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	384640	33722746	29302774	307	30341											
PLCG1	5335	broad.mit.edu	37	chr20	39795229	39795229	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acccaactcatatgccatctCtttccggtgaggggtgtggc	11	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39795229	G	G	39795229	3	3	12	1	0	0	0	0	1	0	0	0	12130	913	32	4	2184	4	PLCG1	20	39795229	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	6072483	39795229	23230291	308	30342											
SULF2	55959	broad.mit.edu	37	chr20	46307604	46307604	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtggtggtgcctcagcctCgcgtggggggtggggagcgg	23	8	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46307604	G	G	46307604	1	3	12	0	1	0	0	0	0	0	0	0	15489	899	31	4		4	SULF2	20	46307604	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	6512375	46307604	16717916	309	30343											
ATP9A	10079	broad.mit.edu	37	chr20	50346692	50346692	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacagagcagaagctcccacGaagctgtggtccaaataaaa	9	10	0	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50346692	A	A	50346692	1	1	12	0	1	0	0	0	0	0	0	0	1202	1073	37	4		4	ATP9A	20	50346692	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	4039088	50346692	12678828	310	30344											
MX1	4599	broad.mit.edu	37	chr21	42807647	42807647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctggtctctcccttgacaCgtagggattatggggattac	11	10	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42807647	T	T	42807647	1	4	12	0	1	0	0	0	0	0	0	0	10091	551	19	4		4	MX1	21	42807647	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08		42807647	5322248	311	30345											
PRDM15	63977	broad.mit.edu	37	chr21	43235956	43235956	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccggcactcagtgggaatCacaaagaggaatcgtctcaa	10	11	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43235956	T	T	43235956	1	4	12	0	1	0	0	0	0	0	0	0	12562	841	29	4		4	PRDM15	21	43235956	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	428309	43235956	4893939	312	30346											
TRMT2A	27037	broad.mit.edu	37	chr22	20102949	20102949	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccgacgccaaccagaaactCacacttattacgatactcag	5	15	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20102949	G	G	20102949	3	3	12	1	0	0	0	0	1	0	0	0	16690	835	29	4	1183	4	TRMT2A	22	20102949	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08		20102949	31201617	313	30347											
MCM5	4174	broad.mit.edu	37	chr22	35802587	35802587	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgaagatccctggcatcatCatcgcggcctctgcggtccg	12	14	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35802587	T	T	35802587	2	4	12	1	0	0	0	0	0	0	0	1	9483	816	29	4		4	MCM5	22	35802587	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	15699638	35802587	15501979	314	30348											
MYH9	4627	broad.mit.edu	37	chr22	36737460	36737460	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtctgtgatggcatagatgtGagggggcatctcgtgcctct	15	8	3	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36737460	C	C	36737460	3	2	12	1	0	0	0	0	1	0	0	0	10136	1290	45	4	5593	4	MYH9	22	36737460	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	934873	36737460	14567106	315	30349											
DDX17	10521	broad.mit.edu	37	chr22	38891652	38891652	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatgctgaaccttctctctCaaaatagctgttttagtcac	5	12	3	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38891652	G	G	38891652	1	3	12	0	1	0	0	0	0	0	0	0	4377	841	29	4		4	DDX17	22	38891652	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	2154192	38891652	12412914	316	30350											
JOSD1	9929	broad.mit.edu	37	chr22	39085178	39085178	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctctgatgcagcccattttCcaaggttccctggctgtaat	9	12	1	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39085178	G	G	39085178	1	3	12	0	1	0	0	0	0	0	0	0	8028	870	30	4		4	JOSD1	22	39085178	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	193526	39085178	12219388	317	30351											
ST13	6767	broad.mit.edu	37	chr22	41240755	41240755	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagatttactatgcgcttttCctggaagaatcgtgtcataa	8	7	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41240755	A	A	41240755	1	1	12	0	1	0	0	0	0	0	0	0	15328	870	30	3		3	ST13	22	41240755	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	2155577	41240755	10063811	318	30352											
MPPED1	758	broad.mit.edu	37	chr22	43870650	43870650	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtacaagatcgtgatcgcAggcaaccacgagctgacctt	11	11	0	3	rs143130815	by1000genomes	TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43870650	T	T	43870650	2	4	12	1	0	0	0	0	0	0	0	1	9835	175	7	5		5	MPPED1	22	43870650	Silent	SNP	A	TCGA-05-4402-01A-01D-1265-08	2629895	43870650	7433916	319	30353											
TBC1D22A	25771	broad.mit.edu	37	chr22	47274580	47274580	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggttgagctggtccggaatCcctaagccagtgcgtccaat	12	11	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47274580	G	G	47274580	3	3	12	1	0	0	0	0	1	0	0	0	15730	845	30	4	687	4	TBC1D22A	22	47274580	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	3403930	47274580	4029986	320	30354											
HDAC10	83933	broad.mit.edu	37	chr22	50688261	50688261	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgtgtggcctgggcccAcccccctgcagccagcctgg	13	17	0	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50688261	G	G	50688261	1	3	12	0	1	0	0	0	0	0	0	0	7072	174	6	5		5	HDAC10	22	50688261	Intron	SNP	A	TCGA-05-4402-01A-01D-1265-08	3413681	50688261	616305	321	30355											
CD99	4267	broad.mit.edu	37	chrX	2658900	2658900	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggttagaacagctgccTgaggctcctccctgaaggac	13	12	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2658900	C	C	2658900	1	2	12	0	1	0	0	0	0	0	0	0	3080	1595	55	5		5	CD99	23	2658900	3'UTR	SNP	T	TCGA-05-4402-01A-01D-1265-08		2658900	152611660	322	30356											
TLR7	51284	broad.mit.edu	37	chrX	12905246	12905246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatggcagtgaattccaacCtttagcagagctgagatatt	9	7	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12905246	A	A	12905246	3	1	12	1	0	0	0	0	1	0	0	0	16079	681	24	2	1625	2	TLR7	23	12905246	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	10246346	12905246	142365314	323	30357											
TLR8	51311	broad.mit.edu	37	chrX	12937571	12937571	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgaagacaaccagttaCcccaaataccctctggtttg	7	12	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12937571	T	T	12937571	3	4	12	1	0	0	0	0	1	0	0	0	16080	507	18	4	418	4	TLR8	23	12937571	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	32325	12937571	142332989	324	30358											
PPEF1	5475	broad.mit.edu	37	chrX	18775903	18775903	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caattaatatttaggagcctCttggtcctacatcgtttgcc	7	10	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18775903	G	G	18775903	1	3	12	0	1	0	0	0	0	0	0	0	12403	928	32	4		4	PPEF1	23	18775903	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	5838332	18775903	136494657	325	30359											
CXorf59	286464	broad.mit.edu	37	chrX	36103396	36103396	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccccatactataacattttGagactgtttttaattttaag	4	8	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36103396	C	C	36103396	1	2	12	0	1	0	0	0	0	0	0	0	4148	1305	45	4		4	CXorf59	23	36103396	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	17327493	36103396	119167164	326	30360											
CACNA1F	778	broad.mit.edu	37	chrX	49068406	49068406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtctggaagttgttgtttCggtttatctgtgtgccatcc	12	7	2	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49068406	T	T	49068406	3	4	12	1	0	0	0	0	1	0	0	0	2569	884	31	4	1904	4	CACNA1F	23	49068406	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	12965010	49068406	106202154	327	30361											
FAAH2	158584	broad.mit.edu	37	chrX	57420905	57420905	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatgggcttcggtttacaaGatcgtgatatatcaatgtca	9	7	2	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57420905	A	A	57420905	1	1	12	0	1	0	0	0	0	0	0	0	5400	957	33	4		4	FAAH2	23	57420905	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	8352499	57420905	97849655	328	30362											
RLIM	51132	broad.mit.edu	37	chrX	73811243	73811267	+	3'UTR	DEL	ATCAGCTACATAGCTGAGAGTTCAG	-	-													tcctgtttgcccatcactatAtcagctacatagctgagagt					rs146896619	by1000genomes	TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73811267	-	-	73811243	6	5	12	0	1	1	0	1	0	0	0	0	13501	464	16	0		0	RLIM	23	73811243	3'UTR	DEL	ATCAGCTACATAGCTGAGAGTTCAG	TCGA-05-4402-01A-01D-1265-08	16390338	73811243	81459317	329	30363											
MAGEE2	139599	broad.mit.edu	37	chrX	75003459	75003459	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactccaagactttcattttGatggtttcatggtgagctcg	9	8	2	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75003459	C	C	75003459	3	2	12	1	0	0	0	0	1	0	0	0	9278	1280	45	4	147	4	MAGEE2	23	75003459	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	1192216	75003459	80267101	330	30364											
NXF5	55998	broad.mit.edu	37	chrX	101097624	101097624	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcaagtgatctgcttgcctCggcctcccaaagtgttggga	11	12	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101097624	T	T	101097624	1	4	12	0	1	0	0	0	0	0	0	0	10881	899	31	4		4	NXF5	23	101097624	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	26094165	101097624	54172936	331	30365											
ARMCX5	64860	broad.mit.edu	37	chrX	101857001	101857001	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgtgaaaacaccaaccGggacaaaacttcagtcaagg	9	9	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101857001	T	T	101857001	1	4	12	0	1	0	0	0	0	0	0	0	966	1131	39	1		1	ARMCX5	23	101857001	5'UTR	SNP	G	TCGA-05-4402-01A-01D-1265-08	759377	101857001	53413559	332	30366											
GPRASP1	9737	broad.mit.edu	37	chrX	101909157	101909157	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtttggtgctgaaagattgTctaagacagagagaaactcc	12	6	1	5			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101909157	A	A	101909157	3	1	12	1	0	0	0	0	1	0	0	0	6788	1667	58	5	318	5	GPRASP1	23	101909157	Missense_Mutation	SNP	T	TCGA-05-4402-01A-01D-1265-08	52156	101909157	53361403	333	30367											
NUP62CL	54830	broad.mit.edu	37	chrX	106391025	106391025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgggcattcagaattctGcagatctggtggagctaaaa	11	6	3	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106391025	T	T	106391025	3	4	12	1	0	0	0	0	1	0	0	0	10864	1319	46	3	13	3	NUP62CL	23	106391025	Missense_Mutation	SNP	G	TCGA-05-4402-01A-01D-1265-08	4481868	106391025	48879535	334	30368											
COL4A5	1287	broad.mit.edu	37	chrX	107869614	107869614	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagttttaggcacatacttGagcagatatgaaatttttta	7	4	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107869614	A	A	107869614	1	1	12	0	1	0	0	0	0	0	0	0	3726	1305	45	4		4	COL4A5	23	107869614	Intron	SNP	G	TCGA-05-4402-01A-01D-1265-08	1478589	107869614	47400946	335	30369											
CAPN6	827	broad.mit.edu	37	chrX	110494845	110494845	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcgaaccatatacaccttCtcagcactgaagacttccac	6	14	1	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110494845	T	T	110494845	2	4	12	1	0	0	0	0	0	0	0	1	2656	912	32	4		4	CAPN6	23	110494845	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	2625231	110494845	44775715	336	30370											
CUL4B	8450	broad.mit.edu	37	chrX	119660694	119660694	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaattaaagattctattctCttcttaagatcagcaggctg	6	8	5	2			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119660694	G	G	119660694	3	3	12	1	0	0	0	0	1	0	0	0	4091	912	32	4	81	4	CUL4B	23	119660694	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	9165849	119660694	35609866	337	30371											
ZNF280C	55609	broad.mit.edu	37	chrX	129338802	129338802	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataacaatgtagtggcatctGaaagctgaaaagagctgaat	10	5	1	4			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129338802	T	T	129338802	1	4	12	0	1	0	0	0	0	0	0	0	17942	1305	45	3		3	ZNF280C	23	129338802	3'UTR	SNP	G	TCGA-05-4402-01A-01D-1265-08	9678108	129338802	25931758	338	30372											
SAGE1	55511	broad.mit.edu	37	chrX	134990416	134990416	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttactagttgtactatcCtacttggtttccatatgaat	6	8	0	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134990416	A	A	134990416	1	1	12	0	1	0	0	0	0	0	0	0	13920	696	24	2		2	SAGE1	23	134990416	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	5651614	134990416	20280144	339	30373											
GPR112	139378	broad.mit.edu	37	chrX	135453791	135453791	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtgcattctgcatttgtCaattcaaacaaccatagatt	5	9	4	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135453791	T	T	135453791	1	4	12	0	1	0	0	0	0	0	0	0	6694	841	29	4		4	GPR112	23	135453791	Intron	SNP	C	TCGA-05-4402-01A-01D-1265-08	463375	135453791	19816769	340	30374											
TMEM185A	84548	broad.mit.edu	37	chrX	148692995	148692995	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggatttcgtgcccagaCtccagttccaactgaggctc	10	12	0	3			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148692995	T	T	148692995	3	4	12	1	0	0	0	0	1	0	0	0	16230	565	20	4	886	4	TMEM185A	23	148692995	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	13239204	148692995	6577565	341	30375											
TKTL1	8277	broad.mit.edu	37	chrX	153539356	153539356	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcactgcataaacatctatCagaggcgctgcgaagccttt	9	11	2	1			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153539356	G	G	153539356	3	3	12	1	0	0	0	0	1	0	0	0	16058	827	29	4	534	4	TKTL1	23	153539356	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	4846361	153539356	1731204	342	30376											
ATP6AP1	537	broad.mit.edu	37	chrX	153664138	153664138	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctccctgttcatgctcttCatcttcacctatggcctgca	5	16	5	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153664138	T	T	153664138	2	4	12	1	0	0	0	0	0	0	0	1	1169	825	29	4		4	ATP6AP1	23	153664138	Silent	SNP	C	TCGA-05-4402-01A-01D-1265-08	124782	153664138	1606422	343	30377											
GAB3	139716	broad.mit.edu	37	chrX	153944516	153944516	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatcacccggatgggcttgCtggagtgcttgttcctgtag	13	10	1	0			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153944516	T	T	153944516	3	4	12	1	0	0	0	0	1	0	0	0	6210	797	28	4	1638	4	GAB3	23	153944516	Missense_Mutation	SNP	C	TCGA-05-4402-01A-01D-1265-08	280378	153944516	1326044	344	30378											
CDK11A	728642	broad.mit.edu	37	chr1	1636201	1636201	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctccggtgccacccgggAggcaaatacttgcttctgtg	12	13	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1636201	T	T	1636201	1	4	13	0	1	0	0	0	0	0	0	0	3156	319	11	5		5	CDK11A	1	1636201	3'UTR	SNP	A	TCGA-05-4403-01A-01D-1265-08		1636201	247614420	1	30379											
KIAA1751	85452	broad.mit.edu	37	chr1	1896251	1896251	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaagcaaaaggtgtcagGggttgggctgcggcagggct	17	6	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1896251	C	C	1896251	1	2	13	0	1	0	0	0	0	0	0	0	8326	1247	43	4		4	KIAA1751	1	1896251	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	260050	1896251	247354370	2	30380											
NPHP4	261734	broad.mit.edu	37	chr1	5947543	5947543	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgcagaagagaaaagCgcgttcagaggctggagccg	16	8	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5947543	T	T	5947543	1	4	13	0	1	0	0	0	0	0	0	0	10676	783	27	4		4	NPHP4	1	5947543	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	4051292	5947543	243303078	3	30381											
UBE4B	10277	broad.mit.edu	37	chr1	10209284	10209284	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgtccccaaggtatttgcAgcgttgcctgagttttatgt	11	8	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10209284	T	T	10209284	2	4	13	1	0	0	0	0	0	0	0	1	17009	175	7	5		5	UBE4B	1	10209284	Silent	SNP	A	TCGA-05-4403-01A-01D-1265-08	4261741	10209284	239041337	4	30382											
PPT1	5538	broad.mit.edu	37	chr1	40558210	40558210	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacacaatgatggaaactcAtgagtccaaatattgtttat	6	6	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40558210	T	T	40558210	1	4	13	0	1	0	0	0	0	0	0	0	12512	232	8	5		5	PPT1	1	40558210	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	30348926	40558210	208692411	5	30383											
FAAH	2166	broad.mit.edu	37	chr1	46867858	46867858	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggcccctgaggccgtgctCttcacctatgtgggaaaggt	13	12	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46867858	T	T	46867858	2	4	13	1	0	0	0	0	0	0	0	1	5399	900	32	4		4	FAAH	1	46867858	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	6309648	46867858	202382763	6	30384											
WDR78	79819	broad.mit.edu	37	chr1	67292372	67292372	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggcattatctttattcaTaaaggactctcataaactat	4	9	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67292372	A	A	67292372	1	1	13	0	1	0	0	0	0	0	0	0	17455	1421	49	5		5	WDR78	1	67292372	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	20424514	67292372	181958249	7	30385											
LRRIQ3	127255	broad.mit.edu	37	chr1	74648337	74648337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcacatgatgatccagcGctttgagaggccatatactg	9	9	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74648337	T	T	74648337	3	4	13	1	0	0	0	0	1	0	0	0	9117	1087	38	3	1440	3	LRRIQ3	1	74648337	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	7355965	74648337	174602284	8	30386											
BRDT	676	broad.mit.edu	37	chr1	92447335	92447335	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagctgtccccttaaatgtaCctctgttgatgggagcactt	9	10	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92447335	T	T	92447335	1	4	13	0	1	0	0	0	0	0	0	0	1517	522	18	4		4	BRDT	1	92447335	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	17798998	92447335	156803286	9	30387											
PTBP2	58155	broad.mit.edu	37	chr1	97278882	97278882	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtggaagaagctattcAggccttgattgatcttcata	9	7	3	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97278882	C	C	97278882	3	2	13	1	0	0	0	0	1	0	0	0	12832	188	7	5	1571	5	PTBP2	1	97278882	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	4831547	97278882	151971739	10	30388											
VCAM1	7412	broad.mit.edu	37	chr1	101196962	101196962	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtttggaaatgaccttcatCcctaccattgaagatactgg	8	9	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101196962	A	A	101196962	2	1	13	1	0	0	0	0	0	0	0	1	17264	845	30	3		3	VCAM1	1	101196962	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	3918080	101196962	148053659	11	30389											
REG4	83998	broad.mit.edu	37	chr1	120342587	120342587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagggactcacgcagcccCcacttcctccacacatcgtg	9	17	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120342587	A	A	120342587	1	1	13	0	1	0	0	0	0	0	0	0	13322	638	22	2		2	REG4	1	120342587	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	19145625	120342587	128908034	12	30390											
NOTCH2	4853	broad.mit.edu	37	chr1	120539844	120539844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagtctcacatttctgcCctgtgaagcctgtgaggcat	9	12	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120539844	A	A	120539844	3	1	13	1	0	0	0	0	1	0	0	0	10643	623	22	2	7012	2	NOTCH2	1	120539844	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	197257	120539844	128710777	13	30391											
SF3B4	10262	broad.mit.edu	37	chr1	149897705	149897705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaccaagctcttccctccCtttcccaacaaagcacacct	2	19	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149897705	A	A	149897705	1	1	13	0	1	0	0	0	0	0	0	0	14266	696	24	2		2	SF3B4	1	149897705	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	29357861	149897705	99352916	14	30392											
MTMR11	10903	broad.mit.edu	37	chr1	149907293	149907293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagacatctgaaatcgccCtcattttcctaccctggcag	8	13	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149907293	A	A	149907293	1	1	13	0	1	0	0	0	0	0	0	0	10034	696	24	2		2	MTMR11	1	149907293	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	9588	149907293	99343328	15	30393											
FLG	2312	broad.mit.edu	37	chr1	152279982	152279982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggtgtccatgaatggtGtcctgaccctcttgggacgt	13	12	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279982	T	T	152279982	3	4	13	1	0	0	0	0	1	0	0	0	5979	1368	48	3	4809	3	FLG	1	152279982	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	2372689	152279982	96970639	16	30394											
FLG	2312	broad.mit.edu	37	chr1	152281324	152281324	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgtctggagctgtctgctGactggagctggtggtgggat	18	6	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152281324	C	C	152281324	4	2	13	1	0	0	0	0	0	1	0	0	5979	1294	45	4	6151	4	FLG	1	152281324	Nonsense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	1342	152281324	96969297	17	30395											
LCE3C	353144	broad.mit.edu	37	chr1	152573497	152573497	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggggctgctgctgacctgGatcctgatgatgagacaagt	15	8	0	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152573497	T	T	152573497	1	4	13	0	1	0	0	0	0	0	0	0	8743	1189	41	3		3	LCE3C	1	152573497	3'UTR	SNP	G	TCGA-05-4403-01A-01D-1265-08	292173	152573497	96677124	18	30396											
FCRL1	115350	broad.mit.edu	37	chr1	157789733	157789733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctaagaagtccttacagcCcttcaggaagcagagcccaa	8	13	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157789733	A	A	157789733	1	1	13	0	1	0	0	0	0	0	0	0	5851	638	22	2		2	FCRL1	1	157789733	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	5216236	157789733	91460888	19	30397											
ADAMTS4	9507	broad.mit.edu	37	chr1	161161359	161161359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttgtatccgtacctgtGtggaaggagtagatggggag	16	4	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161161359	T	T	161161359	1	4	13	0	1	0	0	0	0	0	0	0	268	1392	48	3		3	ADAMTS4	1	161161359	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	3371626	161161359	88089262	20	30398											
F5	2153	broad.mit.edu	37	chr1	169495107	169495107	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtaataggcactctcctgCcaaaccaaatatcacatggc	6	12	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169495107	T	T	169495107	1	4	13	0	1	0	0	0	0	0	0	0	5391	754	26	4		4	F5	1	169495107	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	8333748	169495107	79755514	21	30399											
CDC73	79577	broad.mit.edu	37	chr1	193099332	193099332	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattcctgtggttagaagacCtgatcgaaaagatctacttg	9	7	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193099332	G	G	193099332	3	3	13	1	0	0	0	0	1	0	0	0	3115	681	24	4	276	4	CDC73	1	193099332	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	23604225	193099332	56151289	22	30400											
PTPRC	5788	broad.mit.edu	37	chr1	198703691	198703691	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatcagtgttaacatttaAtttaaaattttcatacatgt	3	4	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198703691	T	T	198703691	1	4	13	0	1	0	0	0	0	0	0	0	12905	116	4	5		5	PTPRC	1	198703691	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	5604359	198703691	50546930	23	30401											
ANGEL2	90806	broad.mit.edu	37	chr1	213173564	213173564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcacccttcaccagcaCggaatactatcaccttcatt	5	16	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213173564	A	A	213173564	1	1	13	0	1	0	0	0	0	0	0	0	609	551	19	3		3	ANGEL2	1	213173564	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	14469873	213173564	36077057	24	30402											
ESRRG	2104	broad.mit.edu	37	chr1	216737685	216737685	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatggcatagatcttctcCggttcagccaccaacaaatg	9	12	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216737685	T	T	216737685	2	4	13	1	0	0	0	0	0	0	0	1	5304	639	23	4		4	ESRRG	1	216737685	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	3564121	216737685	32512936	25	30403											
NVL	4931	broad.mit.edu	37	chr1	224424241	224424241	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgaaggtcaccagcaattGcttccaaatttacatctgca	7	11	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224424241	A	A	224424241	3	1	13	1	0	0	0	0	1	0	0	0	10875	1319	46	4	253	4	NVL	1	224424241	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	7686556	224424241	24826380	26	30404											
MTR	4548	broad.mit.edu	37	chr1	237052596	237052596	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagctccggggcaagtacccGaatcgaggctttcccaagat	11	13	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237052596	C	C	237052596	2	2	13	1	0	0	0	0	0	0	0	1	10052	1045	37	4		4	MTR	1	237052596	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	12628355	237052596	12198025	27	30405											
RYR2	6262	broad.mit.edu	37	chr1	237796726	237796726	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactcagggacgaggcaaatCgtagtctgcacatttgaaga	12	8	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237796726	A	A	237796726	1	1	13	0	1	0	0	0	0	0	0	0	13880	899	31	3		3	RYR2	1	237796726	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	744130	237796726	11453895	28	30406											
RYR2	6262	broad.mit.edu	37	chr1	237870138	237870138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccagttgcaggcatgcCacgtcttgctaaattttgaa	11	9	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237870138	A	A	237870138	1	1	13	0	1	0	0	0	0	0	0	0	13880	609	21	2		2	RYR2	1	237870138	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	73412	237870138	11380483	29	30407											
NLRP3	114548	broad.mit.edu	37	chr1	247587992	247587992	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcatccccctggtctgctGgatcgtgtgcactggactga	11	13	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247587992	C	C	247587992	3	2	13	1	0	0	0	0	1	0	0	0	10573	1357	47	4	1257	4	NLRP3	1	247587992	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	9717854	247587992	1662629	30	30408											
OR2M2	391194	broad.mit.edu	37	chr1	248343317	248343317	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaatcagaccttcaactcCgacttcatcctccttggaat	6	13	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343317	A	A	248343317	2	1	13	1	0	0	0	0	0	0	0	1	11104	639	23	1		1	OR2M2	1	248343317	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	755325	248343317	907304	31	30409											
PXDN	7837	broad.mit.edu	37	chr2	1687406	1687406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggctttgcagcaaagaaaAcacaaaaggttttatactca	7	7	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1687406	T	T	1687406	1	4	13	0	1	0	0	0	0	0	0	0	12955	58	2	5		5	PXDN	2	1687406	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08		1687406	241511967	32	30410											
MYT1L	23040	broad.mit.edu	37	chr2	1890256	1890256	+	Intron	DEL	G	-	-													atgacatatcatttttttttGtgaactactgagtgcatgga							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1890256	-	-	1890256	6	5	13	0	1	1	0	1	0	0	0	0	10201	1392	48	0		0	MYT1L	2	1890256	Intron	DEL	G	TCGA-05-4403-01A-01D-1265-08	202850	1890256	241309117	33	30411											
TTC15	51112	broad.mit.edu	37	chr2	3425785	3425785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagaacacctttcaggtGctggagtttaacctggctta	12	8	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3425785	T	T	3425785	1	4	13	0	1	0	0	0	0	0	0	0	16808	1334	46	3		3	TTC15	2	3425785	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	1535529	3425785	239773588	34	30412											
NBAS	51594	broad.mit.edu	37	chr2	15448272	15448272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctccaaaaattaaacaCgtgttttgagtattttagaa	6	6	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15448272	A	A	15448272	1	1	13	0	1	0	0	0	0	0	0	0	10280	551	19	3		3	NBAS	2	15448272	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	12022487	15448272	227751101	35	30413											
APOB	338	broad.mit.edu	37	chr2	21227801	21227801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctacagtttggtttttaCgtgtagggtatacatgtatc	9	5	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21227801	A	A	21227801	1	1	13	0	1	0	0	0	0	0	0	0	787	551	19	3		3	APOB	2	21227801	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	5779529	21227801	221971572	36	30414											
PLB1	151056	broad.mit.edu	37	chr2	28823791	28823791	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactaaagttgtctccaaaCggagtggcctgctctgaaaa	9	11	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28823791	T	T	28823791	1	4	13	0	1	0	0	0	0	0	0	0	12119	551	19	4		4	PLB1	2	28823791	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	7595990	28823791	214375582	37	30415											
PREPL	9581	broad.mit.edu	37	chr2	44565618	44565618	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttttgtatttctcttcaTtgtaaaaaataaatcccaat	2	8	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44565618	C	C	44565618	3	2	13	1	0	0	0	0	1	0	0	0	12581	1493	52	5	1188	5	PREPL	2	44565618	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	15741827	44565618	198633755	38	30416											
CCDC85A	114800	broad.mit.edu	37	chr2	56420011	56420011	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgacagcccggaccaccacAagcaccacgcgagcagtggc	11	17	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56420011	T	T	56420011	4	4	13	1	0	0	0	0	0	1	0	0	2887	131	5	5	682	5	CCDC85A	2	56420011	Nonsense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	11854393	56420011	186779362	39	30417											
ARHGAP25	9938	broad.mit.edu	37	chr2	69015178	69015178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatagctccttgagcagtGctcaagggagacaaccagaa	12	9	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69015178	T	T	69015178	1	4	13	0	1	0	0	0	0	0	0	0	876	1334	46	3		3	ARHGAP25	2	69015178	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	12595167	69015178	174184195	40	30418											
SLC4A5	57835	broad.mit.edu	37	chr2	74492357	74492357	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcttgctccagcgttcgcCgccttcctctaccttttctt	8	16	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74492357	T	T	74492357	3	4	13	1	0	0	0	0	1	0	0	0	14771	652	23	4	3069	4	SLC4A5	2	74492357	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	5477179	74492357	168707016	41	30419											
DPP10	57628	broad.mit.edu	37	chr2	116593780	116593780	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcttaaaatcagatgaaaaGctttttaaatgtggatccgt	7	5	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116593780	C	C	116593780	3	2	13	1	0	0	0	0	1	0	0	0	4767	962	34	4	2255	4	DPP10	2	116593780	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	42101423	116593780	126605593	42	30420											
C2orf76	130355	broad.mit.edu	37	chr2	120097480	120097480	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactacaggtttgaaattgCgatgttcaaaggaacggatg	11	6	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120097480	T	T	120097480	3	4	13	1	0	0	0	0	1	0	0	0	2215	768	27	4	344	4	C2orf76	2	120097480	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	3503700	120097480	123101893	43	30421											
CNTNAP5	129684	broad.mit.edu	37	chr2	125555898	125555898	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctgctctgcaagaatgGtgagtgtgatggcatgatac	13	6	2	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125555898	T	T	125555898	5	4	13	1	0	0	0	0	0	0	1	0	3682	1275	44	3	3289	3	CNTNAP5	2	125555898	Splice_Site	SNP	G	TCGA-05-4403-01A-01D-1265-08	5458418	125555898	117643475	44	30422											
ARHGEF4	50649	broad.mit.edu	37	chr2	131785407	131785407	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcaacctgcacgctccCcctgcagaagaagcatttgt	8	16	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131785407	G	G	131785407	1	3	13	0	1	0	0	0	0	0	0	0	910	638	22	4		4	ARHGEF4	2	131785407	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	6229509	131785407	111413966	45	30423											
LOC150786	150786	broad.mit.edu	37	chr2	132120541	132120541	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaatagatcatctccacgaGacaggcagcaatgatgaatt	8	9	2	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132120541	T	T	132120541	2	4	13	1	0	0	0	0	0	0	0	1	8948	929	33	3		3	LOC150786	2	132120541	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	335134	132120541	111078832	46	30424											
MCM6	4175	broad.mit.edu	37	chr2	136633809	136633809	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccggaggcgggcgaggccCggggcgctcgccgacttact	17	15	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136633809	G	G	136633809	1	3	13	0	1	0	0	0	0	0	0	0	9484	667	23	4		4	MCM6	2	136633809	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	4513268	136633809	106565564	47	30425											
LRP1B	53353	broad.mit.edu	37	chr2	141459600	141459600	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggaaattactggctttGtgagttcctttttgtgacct	10	7	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141459600	C	C	141459600	1	2	13	0	1	0	0	0	0	0	0	0	9042	1392	48	4		4	LRP1B	2	141459600	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	4825791	141459600	101739773	48	30426											
LRP1B	53353	broad.mit.edu	37	chr2	141771368	141771368	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgacctttagaaacataaCtagatatttagagaaagtga	7	5	0	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141771368	G	G	141771368	1	3	13	0	1	0	0	0	0	0	0	0	9042	580	20	4		4	LRP1B	2	141771368	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	311768	141771368	101428005	49	30427											
LYPD6	130574	broad.mit.edu	37	chr2	150325154	150325154	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaaatatattttctctgttGacagagaccagatactgcta	6	8	2	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150325154	T	T	150325154	1	4	13	0	1	0	0	0	0	0	0	0	9202	1305	45	3		3	LYPD6	2	150325154	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	8553786	150325154	92874219	50	30428											
NEB	4703	broad.mit.edu	37	chr2	152410561	152410561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaagttaaaatcacatgCcagttatacaggaaattgtg	8	5	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152410561	A	A	152410561	1	1	13	0	1	0	0	0	0	0	0	0	10397	754	26	3		3	NEB	2	152410561	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	2085407	152410561	90788812	51	30429											
CCDC148	130940	broad.mit.edu	37	chr2	159196812	159196812	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaatgctgcaaagtgTgatgctgtctgtattttaga	13	4	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159196812	C	C	159196812	3	2	13	1	0	0	0	0	1	0	0	0	2808	1696	59	5	1439	5	CCDC148	2	159196812	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	6786251	159196812	84002561	52	30430											
SCN3A	6328	broad.mit.edu	37	chr2	165956739	165956739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatatcagaagagtatgGcacccttttctatctaaatc	5	8	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165956739	T	T	165956739	1	4	13	0	1	0	0	0	0	0	0	0	14031	1218	42	3		3	SCN3A	2	165956739	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	6759927	165956739	77242634	53	30431											
NUP35	129401	broad.mit.edu	37	chr2	183992955	183992955	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattcttgcatgtttttgtcAtcaacatgtaacagaaactg	7	7	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183992955	T	T	183992955	1	4	13	0	1	0	0	0	0	0	0	0	10858	232	8	5		5	NUP35	2	183992955	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	18036216	183992955	59206418	54	30432											
RNF25	64320	broad.mit.edu	37	chr2	219536740	219536740	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaatgcccttagggaagtCggaggcggaaaactaagagg	16	6	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219536740	A	A	219536740	1	1	13	0	1	0	0	0	0	0	0	0	13596	899	31	3		3	RNF25	2	219536740	5'UTR	SNP	C	TCGA-05-4403-01A-01D-1265-08	35543785	219536740	23662633	55	30433											
FARSB	10056	broad.mit.edu	37	chr2	223507471	223507471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaaagctacgttcctctaCaagctttttcctagaaattt	5	10	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223507471	A	A	223507471	1	1	13	0	1	0	0	0	0	0	0	0	5737	493	17	3		3	FARSB	2	223507471	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	3970731	223507471	19691902	56	30434											
FAM124B	79843	broad.mit.edu	37	chr2	225266048	225266048	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcgtcttcatagttatcAaaactgcagtacagcgtcac	8	10	4	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225266048	T	T	225266048	3	4	13	1	0	0	0	0	1	0	0	0	5472	127	5	5	1028	5	FAM124B	2	225266048	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	1758577	225266048	17933325	57	30435											
COL4A3	1285	broad.mit.edu	37	chr2	228141211	228141211	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtaagtatcctctgccaAatctggtacatggcatcaga	9	10	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228141211	T	T	228141211	1	4	13	0	1	0	0	0	0	0	0	0	3723	29	1	5		5	COL4A3	2	228141211	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	2875163	228141211	15058162	58	30436											
SP140	11262	broad.mit.edu	37	chr2	231109864	231109864	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctctatgcaaccaacacttCcttctctctccaccaccaac	1	19	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231109864	A	A	231109864	1	1	13	0	1	0	0	0	0	0	0	0	15076	870	30	3		3	SP140	2	231109864	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	2968653	231109864	12089509	59	30437											
DGKD	8527	broad.mit.edu	37	chr2	234345147	234345147	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctccctaccgtgcccatgCgggccttgcggctccgcatg	12	17	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234345147	T	T	234345147	1	4	13	0	1	0	0	0	0	0	0	0	4507	783	27	4		4	DGKD	2	234345147	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	3235283	234345147	8854226	60	30438											
SEPT2	4735	broad.mit.edu	37	chr2	242283102	242283102	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagtctgtgctaatgttctCgtgttgccagtgaactctgg	11	8	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242283102	T	T	242283102	1	4	13	0	1	0	0	0	0	0	0	0	14177	899	31	4		4	SEPT2	2	242283102	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	7937955	242283102	916271	61	30439											
CPNE9	151835	broad.mit.edu	37	chr3	9757143	9757143	+	Intron	DEL	C	-	-													gtttctcatcatcactgttaCctcctccccttaggttctta							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9757143	-	-	9757143	6	5	13	0	1	1	0	1	0	0	0	0	3851	522	18	0		0	CPNE9	3	9757143	Intron	DEL	C	TCGA-05-4403-01A-01D-1265-08		9757143	188265287	62	30440											
KCNH8	131096	broad.mit.edu	37	chr3	19389488	19389488	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagctgctttcctacgataTttgcatatgagaagtgaagt	9	7	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19389488	C	C	19389488	1	2	13	0	1	0	0	0	0	0	0	0	8108	1508	52	5		5	KCNH8	3	19389488	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	9632345	19389488	178632942	63	30441											
TRANK1	9881	broad.mit.edu	37	chr3	36898996	36898996	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacttcaacctgctgaatCaaaactgtgatgtcctgcat	6	12	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36898996	A	A	36898996	3	1	13	1	0	0	0	0	1	0	0	0	16578	825	29	3	6740	3	TRANK1	3	36898996	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	17509508	36898996	161123434	64	30442											
PTPN23	25930	broad.mit.edu	37	chr3	47451187	47451187	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggcctcgtatgaagcCtatgaggacctgatgaagaa	13	8	0	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47451187	T	T	47451187	2	4	13	1	0	0	0	0	0	0	0	1	12896	668	24	4		4	PTPN23	3	47451187	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	10552191	47451187	150571243	65	30443											
PLXNB1	5364	broad.mit.edu	37	chr3	48457875	48457875	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaggctgtaggcacagggCaggctagggggtgccaggct	19	9	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48457875	A	A	48457875	1	1	13	0	1	0	0	0	0	0	0	0	12218	725	25	3		3	PLXNB1	3	48457875	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1006688	48457875	149564555	66	30444											
MST1R	4486	broad.mit.edu	37	chr3	49927404	49927404	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggcgccgaccctgggcCaggaagtgggtaaggtcaaa	17	10	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49927404	T	T	49927404	2	4	13	1	0	0	0	0	0	0	0	1	9985	581	21	4		4	MST1R	3	49927404	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	1469529	49927404	148095026	67	30445											
SEMA3G	56920	broad.mit.edu	37	chr3	52476383	52476383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaccatctccttggggcCcaaggctcagccctgtctgg	11	17	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52476383	A	A	52476383	1	1	13	0	1	0	0	0	0	0	0	0	14143	638	22	2		2	SEMA3G	3	52476383	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	2548979	52476383	145546047	68	30446											
LRTM1	57408	broad.mit.edu	37	chr3	54958983	54958983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggaaagctccaggggcCagatttgaaagggaattgtt	13	7	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54958983	A	A	54958983	2	1	13	1	0	0	0	0	0	0	0	1	9131	581	21	2		2	LRTM1	3	54958983	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	2482600	54958983	143063447	69	30447											
RYBP	23429	broad.mit.edu	37	chr3	72495721	72495721	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttctgaaggtgcagacGctacaatcccaaaacccttc	7	13	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72495721	C	C	72495721	3	2	13	1	0	0	0	0	1	0	0	0	13877	1078	38	4	618	4	RYBP	3	72495721	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	17536738	72495721	125526709	70	30448											
ROBO2	6092	broad.mit.edu	37	chr3	77666743	77666743	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaagatgaactggaagaaGatgatgatagggtcccaaca	13	5	0	6			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77666743	T	T	77666743	3	4	13	1	0	0	0	0	1	0	0	0	13625	942	33	3	3461	3	ROBO2	3	77666743	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	5171022	77666743	120355687	71	30449											
CD200R1	131450	broad.mit.edu	37	chr3	112648393	112648393	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataaaagaaaagcttgatAaagaacttcatgtgttacat	7	4	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112648393	G	G	112648393	1	3	13	0	1	0	0	0	0	0	0	0	3011	377	13	5		5	CD200R1	3	112648393	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	34981650	112648393	85374037	72	30450											
TOPBP1	11073	broad.mit.edu	37	chr3	133362940	133362940	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaccacagcataatccGcaacagttctgctcagaagg	10	11	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133362940	A	A	133362940	3	1	13	1	0	0	0	0	1	0	0	0	16493	1087	38	4	2868	4	TOPBP1	3	133362940	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	20714547	133362940	64659490	73	30451											
P2RY1	5028	broad.mit.edu	37	chr3	152553711	152553711	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatgcgccttgaccaagaCgggcttccagttttactacc	8	13	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152553711	T	T	152553711	3	4	13	1	0	0	0	0	1	0	0	0	11440	536	19	4	142	4	P2RY1	3	152553711	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	19190771	152553711	45468719	74	30452											
UTS2D	257313	broad.mit.edu	37	chr3	190993146	190993146	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttccagctgataaaattGtaaaatgataattaattggt	6	4	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190993146	T	T	190993146	1	4	13	0	1	0	0	0	0	0	0	0	17232	1392	48	3		3	UTS2D	3	190993146	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	38439435	190993146	7029284	75	30453											
LRCH3	84859	broad.mit.edu	37	chr3	197574226	197574229	+	Intron	DEL	TGTT	-	-													tcatttgttttttatgtatcTgtttgtctttttatcaaaga							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197574229	-	-	197574226	6	5	13	0	1	1	0	1	0	0	0	0	9021	1595	55	0		0	LRCH3	3	197574226	Intron	DEL	TGTT	TCGA-05-4403-01A-01D-1265-08	6581080	197574226	448204	76	30454											
C4orf23	152992	broad.mit.edu	37	chr4	8470028	8470028	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggtggaaagcaattaaacAcaagaagttctcgaaatggg	11	5	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8470028	T	T	8470028	3	4	13	1	0	0	0	0	1	0	0	0	2279	159	6	5	1916	5	C4orf23	4	8470028	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08		8470028	182684248	77	30455											
C1QTNF7	114905	broad.mit.edu	37	chr4	15444288	15444288	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcagccagaagatgaagtCtggctggagattttcttcac	11	9	3	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15444288	A	A	15444288	2	1	13	1	0	0	0	0	0	0	0	1	1988	900	32	3		3	C1QTNF7	4	15444288	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	6974260	15444288	175709988	78	30456											
FGFBP1	9982	broad.mit.edu	37	chr4	15938263	15938263	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagatcttcatggctgcaGctgggcgttcacctgtttga	11	10	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15938263	T	T	15938263	1	4	13	1	0	0	0	0	0	0	0	0	5917	986	34	3		3	FGFBP1	4	15938263	Translation_Start_Site	SNP	G	TCGA-05-4403-01A-01D-1265-08	493975	15938263	175216013	79	30457											
SLC34A2	10568	broad.mit.edu	37	chr4	25674865	25674865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccactgtcatcaagaagaCcatcaacactggtaggtaca	8	12	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25674865	A	A	25674865	3	1	13	1	0	0	0	0	1	0	0	0	14682	507	18	3	1239	3	SLC34A2	4	25674865	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	9736602	25674865	165479411	80	30458											
RHOH	399	broad.mit.edu	37	chr4	40245635	40245635	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaccccaaagactaatgggGagagggagggccgggaagcc	17	10	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40245635	T	T	40245635	1	4	13	0	1	0	0	0	0	0	0	0	13449	1189	41	3		3	RHOH	4	40245635	3'UTR	SNP	G	TCGA-05-4403-01A-01D-1265-08	14570770	40245635	150908641	81	30459											
STAP1	26228	broad.mit.edu	37	chr4	68447323	68447323	+	Intron	DEL	C	-	-													ggataaactgtatatctctgCgtacatgccatatttcctct							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68447323	-	-	68447323	6	5	13	0	1	1	0	1	0	0	0	0	15370	783	27	0		0	STAP1	4	68447323	Intron	DEL	C	TCGA-05-4403-01A-01D-1265-08	28201688	68447323	122706953	82	30460											
NDST3	9348	broad.mit.edu	37	chr4	119059262	119059262	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcccctcaccattcgggCgtctaccctgtacatgttca	9	15	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119059262	T	T	119059262	2	4	13	1	0	0	0	0	0	0	0	1	10352	755	27	4		4	NDST3	4	119059262	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	50611939	119059262	72095014	83	30461											
PDE5A	8654	broad.mit.edu	37	chr4	120549620	120549620	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggggtgaacgaagggcaCaattcaacaggggagagaaa	15	6	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120549620	T	T	120549620	1	4	13	0	1	0	0	0	0	0	0	0	11738	493	17	4		4	PDE5A	4	120549620	5'Flank	SNP	C	TCGA-05-4403-01A-01D-1265-08	1490358	120549620	70604656	84	30462											
FAT4	79633	broad.mit.edu	37	chr4	126320096	126320096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagcatgtctctgaatttGtgaaacttcgtagtgcagtg	10	7	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126320096	T	T	126320096	1	4	13	0	1	0	0	0	0	0	0	0	5749	1392	48	3		3	FAT4	4	126320096	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	5770476	126320096	64834180	85	30463											
MMAA	166785	broad.mit.edu	37	chr4	146545337	146545337	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagaggagtttgatataAccacttctttttatcaactt	6	7	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146545337	T	T	146545337	1	4	13	0	1	0	0	0	0	0	0	0	9732	58	2	5		5	MMAA	4	146545337	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	20225241	146545337	44608939	86	30464											
RPS3A	6189	broad.mit.edu	37	chr4	152023255	152023255	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaaatgatacatactgatTataccattatatttatcctg	3	9	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152023255	C	C	152023255	1	2	13	0	1	0	0	0	0	0	0	0	13755	1769	61	5		5	RPS3A	4	152023255	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	5477918	152023255	39131021	87	30465											
DCHS2	54798	broad.mit.edu	37	chr4	155241865	155241865	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgtgccaaatgaggggtgGatgagaaatggattcgtgcc	16	5	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155241865	T	T	155241865	2	4	13	1	0	0	0	0	0	0	0	1	4321	1164	41	3		3	DCHS2	4	155241865	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	3218610	155241865	35912411	88	30466											
RAPGEF2	9693	broad.mit.edu	37	chr4	160259617	160259617	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttagacttcagtgctactCctggtgagtatcaccaacac	7	11	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160259617	G	G	160259617	3	3	13	1	0	0	0	0	1	0	0	0	13152	855	30	4	1853	4	RAPGEF2	4	160259617	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	5017752	160259617	30894659	89	30467											
TLL1	7092	broad.mit.edu	37	chr4	166996110	166996110	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctacatgtgtcaatgcCgtaatggatttgtgctacat	11	7	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166996110	T	T	166996110	3	4	13	1	0	0	0	0	1	0	0	0	16068	652	23	4	2335	4	TLL1	4	166996110	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	6736493	166996110	24158166	90	30468											
SPOCK3	50859	broad.mit.edu	37	chr4	167833783	167833783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttacctgaaaagagtaGgtatgaccatctgaaccaca	8	9	2	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167833783	T	T	167833783	2	4	13	1	0	0	0	0	0	0	0	1	15199	987	35	2		2	SPOCK3	4	167833783	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	837673	167833783	23320493	91	30469											
GALNTL6	442117	broad.mit.edu	37	chr4	173233039	173233039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgataaaaactcatattGcatcatcttaaatatacttg	3	6	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173233039	T	T	173233039	1	4	13	0	1	0	0	0	0	0	0	0	6287	1334	46	3		3	GALNTL6	4	173233039	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	5399256	173233039	17921237	92	30470											
CDH12	1010	broad.mit.edu	37	chr5	21884524	21884524	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagttggagaaaatgaaaAaaaggctggctgaaaatcac	11	5	2	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21884524	G	G	21884524	1	3	13	0	1	0	0	0	0	0	0	0	3128	29	1	5		5	CDH12	5	21884524	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08		21884524	159030736	93	30471											
HEATR7B2	133558	broad.mit.edu	37	chr5	41045927	41045927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatggtccaggccacatcaCtgatcttccataaggattct	8	11	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41045927	A	A	41045927	3	1	13	1	0	0	0	0	1	0	0	0	7102	565	20	3	3100	3	HEATR7B2	5	41045927	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	19161403	41045927	139869333	94	30472											
PIK3R1	5295	broad.mit.edu	37	chr5	67576684	67576684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctatcacacacattcaCttgagtgtatataaatgaaa	6	7	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67576684	A	A	67576684	1	1	13	0	1	0	0	0	0	0	0	0	12013	580	20	3		3	PIK3R1	5	67576684	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	26530757	67576684	113338576	95	30473											
MCCC2	64087	broad.mit.edu	37	chr5	70898367	70898367	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattgccaatgatgccaccGtcaaaggaggtgcctactac	9	11	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70898367	A	A	70898367	3	1	13	1	0	0	0	0	1	0	0	0	9468	1145	40	4	436	4	MCCC2	5	70898367	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	3321683	70898367	110016893	96	30474											
SV2C	22987	broad.mit.edu	37	chr5	75469426	75469427	+	Intron	DNP	GG	TT	TT													ggcaacagttcttcagacctGgctcagagctacaatgcatt							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	75469427	TT	TT	75469426	1	4	13	0	1	0	0	0	0	0	0	0	15537	1363	47	2		2	SV2C	5	75469426	Intron	DNP	GG	TCGA-05-4403-01A-01D-1265-08	4571059	75469426	105445834	97	30475											
THBS4	7060	broad.mit.edu	37	chr5	79378185	79378185	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagtgggcactttacccCgggttggatttcatggaggc	13	10	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79378185	T	T	79378185	1	4	13	0	1	0	0	0	0	0	0	0	15979	667	23	4		4	THBS4	5	79378185	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	3908759	79378185	101537075	98	30476											
AFF4	27125	broad.mit.edu	37	chr5	132232970	132232970	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtatgcttttttcgatacTgaatgcttttttcgttctcc	6	8	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132232970	A	A	132232970	1	1	13	0	1	0	0	0	0	0	0	0	359	1595	55	5		5	AFF4	5	132232970	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	52854785	132232970	48682290	99	30477											
CATSPER3	347732	broad.mit.edu	37	chr5	134344705	134344705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaggatcggaggtcaggGcaggtgtggcagatggagct	20	5	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134344705	T	T	134344705	1	4	13	0	1	0	0	0	0	0	0	0	2715	1218	42	3		3	CATSPER3	5	134344705	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	2111735	134344705	46570555	100	30478											
GM2A	2760	broad.mit.edu	37	chr5	150727164	150727164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaagctggaacgaggcccCgcccacctccctggagggca	13	17	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150727164	T	T	150727164	1	4	13	0	1	0	0	0	0	0	0	0	6548	667	23	4		4	GM2A	5	150727164	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	16382459	150727164	30188096	101	30479											
KIF4B	285643	broad.mit.edu	37	chr5	154396120	154396120	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgctgacatgcagaagAtgctatttgaggaacaaaat	11	6	0	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154396120	T	T	154396120	3	4	13	1	0	0	0	0	1	0	0	0	8374	333	12	5	2703	5	KIF4B	5	154396120	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	3668956	154396120	26519140	102	30480											
GABRA6	2559	broad.mit.edu	37	chr5	161128622	161128622	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcttacaatcaacacctgTcacacccccaccactctcgc	2	20	4	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161128622	C	C	161128622	3	2	13	1	0	0	0	0	1	0	0	0	6225	1667	58	5	1239	5	GABRA6	5	161128622	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	6732502	161128622	19786638	103	30481											
LCP2	3937	broad.mit.edu	37	chr5	169690008	169690008	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctttcctgtaaatgacAgagagcagatgggccatgag	12	7	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169690008	G	G	169690008	1	3	13	0	1	0	0	0	0	0	0	0	8764	203	7	5		5	LCP2	5	169690008	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	8561386	169690008	11225252	104	30482											
RPL26L1	51121	broad.mit.edu	37	chr5	172395745	172395745	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtagctttgtgatatcatcAaggatccagatttttcttct	7	7	4	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172395745	C	C	172395745	1	2	13	0	1	0	0	0	0	0	0	0	13685	145	5	5		5	RPL26L1	5	172395745	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	2705737	172395745	8519515	105	30483											
TFAP2A	7020	broad.mit.edu	37	chr6	10411643	10411643	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgatttagggatggaaaagAgcgagagaaaggcggaaggt	17	3	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10411643	T	T	10411643	1	4	13	0	1	0	0	0	0	0	0	0	15910	319	11	5		5	TFAP2A	6	10411643	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08		10411643	160703424	106	30484											
RNF182	221687	broad.mit.edu	37	chr6	13978178	13978178	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataatttattttcttttatgTtctttatgattagtatccat	3	4	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13978178	G	G	13978178	1	3	13	0	1	0	0	0	0	0	0	0	13577	1740	60	5		5	RNF182	6	13978178	3'UTR	SNP	T	TCGA-05-4403-01A-01D-1265-08	3566535	13978178	157136889	107	30485											
GMPR	2766	broad.mit.edu	37	chr6	16254908	16254908	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggccaatgggtattcagAacattttgtggaattcgtga	12	5	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16254908	T	T	16254908	3	4	13	1	0	0	0	0	1	0	0	0	6560	246	9	5	421	5	GMPR	6	16254908	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	2276730	16254908	154860159	108	30486											
PRL	5617	broad.mit.edu	37	chr6	22292797	22292797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttgctccttgtcttcGggggtggcaagggaagaagt	17	7	1	1	rs114131603	byFrequency;by1000genomes	TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22292797	T	T	22292797	2	4	13	1	0	0	0	0	0	0	0	1	12634	1103	39	1		1	PRL	6	22292797	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	6037889	22292797	148822270	109	30487											
BTN3A1	11119	broad.mit.edu	37	chr6	26406114	26406114	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactccaaaaccctctgacaGatcctcccccttgtgcctac	4	18	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26406114	T	T	26406114	1	4	13	0	1	0	0	0	0	0	0	0	1572	957	33	3		3	BTN3A1	6	26406114	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	4113317	26406114	144708953	110	30488											
DNAH8	1769	broad.mit.edu	37	chr6	38821163	38821163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaatggtgaaaagaaatGgaaataaaggggaaggatgc	14	1	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38821163	T	T	38821163	1	4	13	0	1	0	0	0	0	0	0	0	4647	1363	47	2		2	DNAH8	6	38821163	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	12415049	38821163	132293904	111	30489											
TTBK1	84630	broad.mit.edu	37	chr6	43250827	43250827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgggggaggtgctgggGcctcgtagtggctccagcag	19	10	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43250827	T	T	43250827	2	4	13	1	0	0	0	0	0	0	0	1	16802	1190	42	3		3	TTBK1	6	43250827	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	4429664	43250827	127864240	112	30490											
POLH	5429	broad.mit.edu	37	chr6	43550267	43550267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggtcctttgttgttgtGgtggtggtggtggtggtgac	20	4	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43550267	T	T	43550267	1	4	13	0	1	0	0	0	0	0	0	0	12297	1363	47	2		2	POLH	6	43550267	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	299440	43550267	127564800	113	30491											
RHAG	6005	broad.mit.edu	37	chr6	49583306	49583306	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgccttttcaaatagAtaagattcaagcaagtttat	7	6	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49583306	T	T	49583306	1	4	13	0	1	0	0	0	0	0	0	0	13424	348	12	5		5	RHAG	6	49583306	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	6033039	49583306	121531761	114	30492											
GCLC	2729	broad.mit.edu	37	chr6	53380938	53380938	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgcttgtttattgcttcatCtggaaagaagagggacttgg	13	5	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53380938	A	A	53380938	3	1	13	1	0	0	0	0	1	0	0	0	6357	913	32	3	1436	3	GCLC	6	53380938	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	3797632	53380938	117734129	115	30493											
FAM83B	222584	broad.mit.edu	37	chr6	54735197	54735197	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatttcttgtccaggaacgAgtttcagactttcttgctga	9	8	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54735197	T	T	54735197	2	4	13	1	0	0	0	0	0	0	0	1	5687	291	11	5		5	FAM83B	6	54735197	Silent	SNP	A	TCGA-05-4403-01A-01D-1265-08	1354259	54735197	116379870	116	30494											
PRIM2	5558	broad.mit.edu	37	chr6	57472448	57472448	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagggataagccaggtaggtCatattcttctctctgcatct	10	9	5	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57472448	A	A	57472448	1	1	13	0	1	0	0	0	0	0	0	0	12597	841	29	3		3	PRIM2	6	57472448	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	2737251	57472448	113642619	117	30495											
CD109	135228	broad.mit.edu	37	chr6	74493636	74493636	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttaaatgactgcTtataatgtttatcacagttt	4	4	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74493636	A	A	74493636	1	1	13	0	1	0	0	0	0	0	0	0	2993	1624	56	5		5	CD109	6	74493636	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	17021188	74493636	96621431	118	30496											
RIPPLY2	134701	broad.mit.edu	37	chr6	84563689	84563689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggccacaggcacccagcCgggagcgaggctgctgagag	17	12	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84563689	A	A	84563689	1	1	13	0	1	0	0	0	0	0	0	0	13496	667	23	1		1	RIPPLY2	6	84563689	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	10070053	84563689	86551378	119	30497											
HTR1E	3354	broad.mit.edu	37	chr6	87726137	87726137	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaaaagctcattagatgccGagagcatacttagactgtaa	8	7	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87726137	A	A	87726137	3	1	13	1	0	0	0	0	1	0	0	0	7509	1058	37	4	1087	4	HTR1E	6	87726137	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	3162448	87726137	83388930	120	30498											
GABRR1	2569	broad.mit.edu	37	chr6	89907932	89907932	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcctctcgtccttccagtAgtgcctcaggtagagggtca	11	13	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89907932	G	G	89907932	3	3	13	1	0	0	0	0	1	0	0	0	6236	420	15	5	1084	5	GABRR1	6	89907932	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	2181795	89907932	81207135	121	30499											
REV3L	5980	broad.mit.edu	37	chr6	111752238	111752238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgttatatttgaattatGggccctacagttcttatgca	8	7	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111752238	A	A	111752238	1	1	13	0	1	0	0	0	0	0	0	0	13348	1363	47	4		4	REV3L	6	111752238	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	21844306	111752238	59362829	122	30500											
HS3ST5	222537	broad.mit.edu	37	chr6	114379073	114379075	+	In_Frame_Del	DEL	TCA	-	-													caatgcccttaccataattcTcatcattatcaaaaaagtgg							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114379075	-	-	114379073	7	5	13	1	0	1	0	1	0	0	0	0	7435	1551	54	0	655	0	HS3ST5	6	114379073	In_Frame_Del	DEL	TCA	TCGA-05-4403-01A-01D-1265-08	2626835	114379073	56735994	123	30501											
DSE	29940	broad.mit.edu	37	chr6	116757636	116757636	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcttcatagggccatctAtagatgttcagagcttcact	7	11	5	2	rs145999978		TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116757636	G	G	116757636	3	3	13	1	0	0	0	0	1	0	0	0	4814	449	16	5	2023	5	DSE	6	116757636	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	2378563	116757636	54357431	124	30502											
SLC35F1	222553	broad.mit.edu	37	chr6	118556737	118556737	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatgattttgggactcataGacctggaagcaaattatctg	9	7	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118556737	A	A	118556737	3	1	13	1	0	0	0	0	1	0	0	0	14702	942	33	4	425	4	SLC35F1	6	118556737	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	1799101	118556737	52558330	125	30503											
LAMA2	3908	broad.mit.edu	37	chr6	129781556	129781556	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taatattctattatcatgtgGatgatgtggagcaggtttga	11	3	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129781556	T	T	129781556	1	4	13	0	1	0	0	0	0	0	0	0	8678	1189	41	3		3	LAMA2	6	129781556	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	11224819	129781556	41333511	126	30504											
ENPP3	5169	broad.mit.edu	37	chr6	132006597	132006597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacgaagggcctgccccccGcatccgagctcataatatac	9	15	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132006597	T	T	132006597	3	4	13	1	0	0	0	0	1	0	0	0	5173	1087	38	3	1264	3	ENPP3	6	132006597	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	2225041	132006597	39108470	127	30505											
TAAR5	9038	broad.mit.edu	37	chr6	132910150	132910151	+	Frame_Shift_Ins	INS	-	A	A													tgctgagcctgtctggtagcINSaaccacaaagatcttcacat							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132910151	A	A	132910150	7	5	13	1	0	1	1	0	0	0	0	0	15610	710	25	0	341	0	TAAR5	6	132910150	Frame_Shift_Ins	INS	-	TCGA-05-4403-01A-01D-1265-08	903553	132910150	38204917	128	30506											
GPR126	57211	broad.mit.edu	37	chr6	142732385	142732385	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctatagaaggtctcatccAttatagagaagaaactgacc	7	9	2	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142732385	T	T	142732385	1	4	13	0	1	0	0	0	0	0	0	0	6705	232	8	5		5	GPR126	6	142732385	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	9822235	142732385	28382682	129	30507											
SYNE1	23345	broad.mit.edu	37	chr6	152557353	152557353	+	Frame_Shift_Del	DEL	C	-	-													gttggctttctagatctgagCagctgatggatatcagaagt							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152557353	-	-	152557353	7	5	13	1	0	1	0	1	0	0	0	0	15564	710	25	0	6329	0	SYNE1	6	152557353	Frame_Shift_Del	DEL	C	TCGA-05-4403-01A-01D-1265-08	9824968	152557353	18557714	130	30508											
FNDC1	84624	broad.mit.edu	37	chr6	159672277	159672277	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggaacagatgctatgtTtctgcctccagaaaaagcct	9	10	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159672277	C	C	159672277	1	2	13	0	1	0	0	0	0	0	0	0	6026	1856	64	5		5	FNDC1	6	159672277	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	7114924	159672277	11442790	131	30509											
PDE10A	10846	broad.mit.edu	37	chr6	165863704	165863704	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatctttgcccattttttcTaacaggaacacaaaatgctt	5	9	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165863704	A	A	165863704	1	1	13	0	1	0	0	0	0	0	0	0	11724	1537	53	5		5	PDE10A	6	165863704	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	6191427	165863704	5251363	132	30510											
GET4	51608	broad.mit.edu	37	chr7	931971	931971	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttcacgacgtacacccAgaagcacccgtccatcgagg	10	15	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	931971	T	T	931971	3	4	13	1	0	0	0	0	1	0	0	0	6400	188	7	5	684	5	GET4	7	931971	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08		931971	158206692	133	30511											
SDK1	221935	broad.mit.edu	37	chr7	4013980	4013980	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtggggtttgtaactcaaGaccctttgcttggcccacag	11	11	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4013980	C	C	4013980	1	2	13	0	1	0	0	0	0	0	0	0	14081	957	33	4		4	SDK1	7	4013980	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	3082009	4013980	155124683	134	30512											
SNX13	23161	broad.mit.edu	37	chr7	17885294	17885294	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagtttcccaaagtttgcTgcaagtttcacagtatttat	6	8	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17885294	A	A	17885294	2	1	13	1	0	0	0	0	0	0	0	1	14998	1567	55	5		5	SNX13	7	17885294	Silent	SNP	T	TCGA-05-4403-01A-01D-1265-08	13871314	17885294	141253369	135	30513											
MYL7	58498	broad.mit.edu	37	chr7	44179330	44179330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcactaggggcctcacccCgctctctgcttccaccacgg	8	20	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44179330	A	A	44179330	1	1	13	0	1	0	0	0	0	0	0	0	10147	667	23	1		1	MYL7	7	44179330	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	26294036	44179330	114959333	136	30514											
ADCY1	107	broad.mit.edu	37	chr7	45614391	45614391	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgagctgctgggcgcGccggggcccgcgcccggcct	18	18	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45614391	C	C	45614391	2	2	13	1	0	0	0	0	0	0	0	1	292	1074	38	4		4	ADCY1	7	45614391	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	1435061	45614391	113524272	137	30515											
VWC2	375567	broad.mit.edu	37	chr7	49842191	49842191	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcggtgagccgagatcgcAccactgcactccagtgtgag	13	12	0	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49842191	G	G	49842191	1	3	13	0	1	0	0	0	0	0	0	0	17370	174	6	5		5	VWC2	7	49842191	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	4227800	49842191	109296472	138	30516											
AUTS2	26053	broad.mit.edu	37	chr7	70254903	70254903	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagagaccactcggaatccCgcaaggacctggccgccgac	12	15	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70254903	T	T	70254903	3	4	13	1	0	0	0	0	1	0	0	0	1230	652	23	4	2920	4	AUTS2	7	70254903	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	20412712	70254903	88883760	139	30517											
WBSCR17	64409	broad.mit.edu	37	chr7	71036198	71036198	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaccggaaccagtacatacTaggacggtgcctatggaagg	13	9	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71036198	A	A	71036198	1	1	13	0	1	0	0	0	0	0	0	0	17391	1537	53	5		5	WBSCR17	7	71036198	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	781295	71036198	88102465	140	30518											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73944272	73944272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggggctgggcgcagtgGctcatgcctgtaatcccagc	17	11	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73944272	T	T	73944272	1	4	13	0	1	0	0	0	0	0	0	0	6933	1218	42	3		3	GTF2IRD1	7	73944272	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	2908074	73944272	85194391	141	30519											
CROT	54677	broad.mit.edu	37	chr7	87011169	87011170	+	Intron	DNP	GG	TT	TT													caaagtgaaaataaaatattGggtcaagttttaagttgaca							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	87011170	TT	TT	87011169	1	4	13	0	1	0	0	0	0	0	0	0	3926	1363	47	2		2	CROT	7	87011169	Intron	DNP	GG	TCGA-05-4403-01A-01D-1265-08	13066897	87011169	72127494	142	30520											
AP4M1	9179	broad.mit.edu	37	chr7	99703974	99703974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgagctcagcatgacgGgtctgcctcaagaaggtgcc	14	10	3	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99703974	T	T	99703974	1	4	13	0	1	0	0	0	0	0	0	0	755	1247	43	2		2	AP4M1	7	99703974	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	12692805	99703974	59434689	143	30521											
NRCAM	4897	broad.mit.edu	37	chr7	107824635	107824635	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattattttcaaacaacttTtttttcactctaaaaaatag	1	6	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107824635	A	A	107824635	1	1	13	0	1	0	0	0	0	0	0	0	10739	1856	64	5		5	NRCAM	7	107824635	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	8120661	107824635	51314028	144	30522											
TMEM168	64418	broad.mit.edu	37	chr7	112424368	112424368	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagacttctccaccaacatAgttgtgctggcaatggcaaa	9	10	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112424368	G	G	112424368	2	3	13	1	0	0	0	0	0	0	0	1	16206	407	15	5		5	TMEM168	7	112424368	Silent	SNP	A	TCGA-05-4403-01A-01D-1265-08	4599733	112424368	46714295	145	30523											
MET	4233	broad.mit.edu	37	chr7	116380037	116380037	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatcaggaccatcaacccctCatgtgaattttctcctggac	7	13	4	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116380037	T	T	116380037	3	4	13	1	0	0	0	0	1	0	0	0	9578	826	29	4	1436	4	MET	7	116380037	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	3955669	116380037	42758626	146	30524											
ASZ1	136991	broad.mit.edu	37	chr7	117067403	117067403	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtcaagacaaggcctcctCcgctacctgagacgtccggt	11	14	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117067403	A	A	117067403	1	1	13	0	1	0	0	0	0	0	0	0	1073	870	30	3		3	ASZ1	7	117067403	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	687366	117067403	42071260	147	30525											
AKR1D1	6718	broad.mit.edu	37	chr7	137708923	137708923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacccattggaacaagaCaatacatggcttgatatcca	7	9	0	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137708923	A	A	137708923	1	1	13	0	1	0	0	0	0	0	0	0	473	493	17	3		3	AKR1D1	7	137708923	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	20641520	137708923	21429740	148	30526											
EPHB6	2051	broad.mit.edu	37	chr7	142566705	142566705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccgatcactgacctctGccccctgccccttcccctca	5	22	4	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142566705	T	T	142566705	1	4	13	0	1	0	0	0	0	0	0	0	5220	1334	46	3		3	EPHB6	7	142566705	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	4857782	142566705	16571958	149	30527											
PIP	5304	broad.mit.edu	37	chr7	142836664	142836664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgggaattaggcatctgcCctgatgatgctgctgtaatc	11	9	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142836664	A	A	142836664	3	1	13	1	0	0	0	0	1	0	0	0	12030	623	22	2	384	2	PIP	7	142836664	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	269959	142836664	16301999	150	30528											
CSMD1	64478	broad.mit.edu	37	chr8	2967670	2967670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatattttgacttgagagGttctcataccaaacagcaat	7	8	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2967670	T	T	2967670	1	4	13	0	1	0	0	0	0	0	0	0	3978	1276	44	3		3	CSMD1	8	2967670	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08		2967670	143396352	151	30529											
ANGPT2	285	broad.mit.edu	37	chr8	6378821	6378821	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctagttcttcaatgAtggaattttgcttggatact	7	5	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6378821	T	T	6378821	3	4	13	1	0	0	0	0	1	0	0	0	611	333	12	5	837	5	ANGPT2	8	6378821	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	3411151	6378821	139985201	152	30530											
SGCZ	137868	broad.mit.edu	37	chr8	13948039	13948039	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttgccattggggcagacGcagagttcatacactgtctg	12	9	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13948039	A	A	13948039	2	1	13	1	0	0	0	0	0	0	0	1	14317	1079	38	4		4	SGCZ	8	13948039	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	7569218	13948039	132415983	153	30531											
HR	55806	broad.mit.edu	37	chr8	21978520	21978520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactgggccccacagggaGggcaggcccagcctctggtc	14	17	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21978520	T	T	21978520	1	4	13	0	1	0	0	0	0	0	0	0	7414	1015	35	2		2	HR	8	21978520	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	8030481	21978520	124385502	154	30532											
C8orf41	80185	broad.mit.edu	37	chr8	33361291	33361291	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgaaagccggcaggtttcTtgcgtaggtcctgcgtaaaa	12	10	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33361291	C	C	33361291	3	2	13	1	0	0	0	0	1	0	0	0	2453	1617	56	5	452	5	C8orf41	8	33361291	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	11382771	33361291	113002731	155	30533											
POLB	5423	broad.mit.edu	37	chr8	42196548	42196548	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaactcgcaaactttgagaAgaacgtgagccaagctatcc	9	10	0	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42196548	G	G	42196548	3	3	13	1	0	0	0	0	1	0	0	0	12284	72	3	5	86	5	POLB	8	42196548	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	8835257	42196548	104167474	156	30534											
CHRNA6	8973	broad.mit.edu	37	chr8	42612132	42612132	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaacgcgaagagtctcaaTgccatcatattccattggat	9	9	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42612132	G	G	42612132	3	3	13	1	0	0	0	0	1	0	0	0	3418	1464	51	5	1183	5	CHRNA6	8	42612132	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	415584	42612132	103751890	157	30535											
PSKH2	85481	broad.mit.edu	37	chr8	87076326	87076326	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccacatgtccactgcactGgtataaggcttccttagcaa	8	13	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87076326	A	A	87076326	2	1	13	1	0	0	0	0	0	0	0	1	12771	1335	47	4		4	PSKH2	8	87076326	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	44464194	87076326	59287696	158	30536											
UTP23	84294	broad.mit.edu	37	chr8	117783936	117783936	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcaagaaaataagtggtcCcaatcctcttagttgtttga	9	8	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117783936	T	T	117783936	3	4	13	1	0	0	0	0	1	0	0	0	17227	623	22	4	615	4	UTP23	8	117783936	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	30707610	117783936	28580086	159	30537											
TRMT12	55039	broad.mit.edu	37	chr8	125464025	125464025	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcaatggagtagcagatcGgtgccaaatacactttggag	12	7	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125464025	A	A	125464025	3	1	13	1	0	0	0	0	1	0	0	0	16689	1116	39	4	859	4	TRMT12	8	125464025	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	7680089	125464025	20899997	160	30538											
DOCK8	81704	broad.mit.edu	37	chr9	286375	286375	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacttactaagtcaaaggaAagcaaggcaaacatctacta	7	8	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	286375	G	G	286375	1	3	13	0	1	0	0	0	0	0	0	0	4733	29	1	5		5	DOCK8	9	286375	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08		286375	140927056	161	30539											
RFX3	5991	broad.mit.edu	37	chr9	3257077	3257077	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtttcagtgcttgcatcatCacattgtcaagccacgcagc	9	12	4	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3257077	A	A	3257077	2	1	13	1	0	0	0	0	0	0	0	1	13372	813	29	3		3	RFX3	9	3257077	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	2970702	3257077	137956354	162	30540											
RANBP6	26953	broad.mit.edu	37	chr9	6013371	6013371	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgcaagatactctgggCcacgaattcttgcacattcc	8	12	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6013371	T	T	6013371	3	4	13	1	0	0	0	0	1	0	0	0	13139	739	26	4	1084	4	RANBP6	9	6013371	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	2756294	6013371	135200060	163	30541											
PRSS3	5646	broad.mit.edu	37	chr9	33798729	33798729	+	Intron	DEL	T	-	-													gaggcggctccctgcagtgcTcccatggagaaatgaggaag							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33798729	-	-	33798729	6	5	13	0	1	1	0	1	0	0	0	0	12728	1566	54	0		0	PRSS3	9	33798729	Intron	DEL	T	TCGA-05-4403-01A-01D-1265-08	27785358	33798729	107414702	164	30542											
TRPM3	80036	broad.mit.edu	37	chr9	73225623	73225623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctctgaacttcctcttcatCcttcttcctggaggactccc	6	16	4	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73225623	T	T	73225623	3	4	13	1	0	0	0	0	1	0	0	0	16712	855	30	4	2622	4	TRPM3	9	73225623	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	39426894	73225623	67987808	165	30543											
KIAA1529	57653	broad.mit.edu	37	chr9	100092349	100092349	+	Intron	DEL	A	-	-													aacagagccagactcctctcAaaaaaaaaaaaaaaaaaaaa							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100092349	-	-	100092349	6	5	13	0	1	1	0	1	0	0	0	0	8310	145	5	0		0	KIAA1529	9	100092349	Intron	DEL	A	TCGA-05-4403-01A-01D-1265-08	26866726	100092349	41121082	166	30544											
KLF6	1316	broad.mit.edu	37	chr10	3827064	3827064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacagccgacccggcccgCgccccggcgcccgcagggaa	13	20	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3827064	A	A	3827064	1	1	13	0	1	0	0	0	0	0	0	0	8421	783	27	3		3	KLF6	10	3827064	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08		3827064	131707683	167	30545											
IL2RA	3559	broad.mit.edu	37	chr10	6054742	6054742	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaacggatgtctcctgggCgaccatttagcacctttgat	9	12	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6054742	T	T	6054742	1	4	13	0	1	0	0	0	0	0	0	0	7756	783	27	4		4	IL2RA	10	6054742	3'UTR	SNP	C	TCGA-05-4403-01A-01D-1265-08	2227678	6054742	129480005	168	30546											
PFKFB3	5209	broad.mit.edu	37	chr10	6257124	6257124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcgatcctatggtcccgGtgtgagctggccccttcctc	12	14	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6257124	T	T	6257124	1	4	13	0	1	0	0	0	0	0	0	0	11857	1276	44	3		3	PFKFB3	10	6257124	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	202382	6257124	129277623	169	30547											
MLLT10	8028	broad.mit.edu	37	chr10	21903727	21903727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggtactgtgattttagtAtatcaataaatatacttggc	7	5	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21903727	G	G	21903727	1	3	13	0	1	0	0	0	0	0	0	0	9719	464	16	5		5	MLLT10	10	21903727	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	15646603	21903727	113631020	170	30548											
MAPK8	5599	broad.mit.edu	37	chr10	49634457	49634457	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttgttatccaaaatgctGgtaatagatgcatctaaaag	8	5	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49634457	T	T	49634457	2	4	13	1	0	0	0	0	0	0	0	1	9375	1335	47	2		2	MAPK8	10	49634457	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	27730730	49634457	85900290	171	30549											
ERCC6	2074	broad.mit.edu	37	chr10	50681199	50681199	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatataaggaatggtaatgtCctagagacctctggtgaatc	10	6	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50681199	T	T	50681199	1	4	13	0	1	0	0	0	0	0	0	0	5259	870	30	4		4	ERCC6	10	50681199	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1046742	50681199	84853548	172	30550											
PARG	8505	broad.mit.edu	37	chr10	51065569	51065569	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgatcaagaagcacatagTctctaagctctcatcttttc	5	10	4	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51065569	A	A	51065569	1	1	13	0	1	0	0	0	0	0	0	0	11542	1682	58	5		5	PARG	10	51065569	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	384370	51065569	84469178	173	30551											
KIAA1274	27143	broad.mit.edu	37	chr10	72301142	72301142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccttccatcagtcttgggCagcccccaagtcctccccag	7	20	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72301142	A	A	72301142	1	1	13	0	1	0	0	0	0	0	0	0	8290	725	25	3		3	KIAA1274	10	72301142	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	21235573	72301142	63233605	174	30552											
KCNMA1	3778	broad.mit.edu	37	chr10	78704761	78704761	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaaaacagagatgggGggagaaagagacagagagag	16	2	0	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78704761	A	A	78704761	1	1	13	0	1	0	0	0	0	0	0	0	8143	1247	43	4		4	KCNMA1	10	78704761	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	6403619	78704761	56829986	175	30553											
KCNMA1	3778	broad.mit.edu	37	chr10	78850108	78850108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacattcagggagtccctcGcagggtgtgtggttgggcag	17	8	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78850108	T	T	78850108	1	4	13	0	1	0	0	0	0	0	0	0	8143	1102	38	3		3	KCNMA1	10	78850108	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	145347	78850108	56684639	176	30554											
GLUD1	2746	broad.mit.edu	37	chr10	88819956	88819956	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctccaggaagatcttgtCagcttctggagttgttggcc	11	10	4	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88819956	G	G	88819956	3	3	13	1	0	0	0	0	1	0	0	0	6540	826	29	4	456	4	GLUD1	10	88819956	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	9969848	88819956	46714791	177	30555											
PDCD11	22984	broad.mit.edu	37	chr10	105169541	105169541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggatcccaagaaagctgGaacatatttctcaaatcagg	8	10	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105169541	T	T	105169541	3	4	13	1	0	0	0	0	1	0	0	0	11711	1174	41	3	982	3	PDCD11	10	105169541	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	16349585	105169541	30365206	178	30556											
HABP2	3026	broad.mit.edu	37	chr10	115344100	115344100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatcaaccagagaagaaaGgccaaactcaactgcccttt	6	12	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115344100	A	A	115344100	1	1	13	0	1	0	0	0	0	0	0	0	7004	1015	35	4		4	HABP2	10	115344100	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	10174559	115344100	20190647	179	30557											
CHST15	51363	broad.mit.edu	37	chr10	125769566	125769566	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggcagagtcctggggttTtccataccatgagtgaaaca	12	8	0	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125769566	A	A	125769566	1	1	13	0	1	0	0	0	0	0	0	0	3434	1856	64	5		5	CHST15	10	125769566	3'UTR	SNP	T	TCGA-05-4403-01A-01D-1265-08	10425466	125769566	9765181	180	30558											
ARFIP2	23647	broad.mit.edu	37	chr11	6500538	6500538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcagatacaccagacaCctctgtggccccacccatac	5	18	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6500538	A	A	6500538	1	1	13	0	1	0	0	0	0	0	0	0	857	522	18	3		3	ARFIP2	11	6500538	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08		6500538	128505978	181	30559											
NLRP14	338323	broad.mit.edu	37	chr11	7079483	7079483	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgggctttgggaattgacaGatctcttctcatctctttct	8	9	4	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7079483	T	T	7079483	1	4	13	0	1	0	0	0	0	0	0	0	10571	957	33	3		3	NLRP14	11	7079483	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	578945	7079483	127927033	182	30560											
MICAL2	9645	broad.mit.edu	37	chr11	12281439	12281439	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaccctggaaggcagccCcccaggtatctccacctcct	9	18	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12281439	T	T	12281439	3	4	13	1	0	0	0	0	1	0	0	0	9663	623	22	4	3423	4	MICAL2	11	12281439	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	5201956	12281439	122725077	183	30561											
INSC	387755	broad.mit.edu	37	chr11	15257264	15257265	+	Intron	DNP	GG	TT	TT													gtggattatctggatgtaggGgactgtgtctttgtgcttgt							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15257265	TT	TT	15257264	1	4	13	0	1	0	0	0	0	0	0	0	7834	1247	43	2		2	INSC	11	15257264	Intron	DNP	GG	TCGA-05-4403-01A-01D-1265-08	2975825	15257264	119749252	184	30562											
TPH1	7166	broad.mit.edu	37	chr11	18047940	18047941	+	Intron	INS	-	A	A													ttatttaatcctcgcacaccINSaaaaaaaaaaaaaaaaaaaa					rs66864134		TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18047941	A	A	18047940	6	5	13	0	1	1	1	0	0	0	0	0	16525	609	21	0		0	TPH1	11	18047940	Intron	INS	-	TCGA-05-4403-01A-01D-1265-08	2790676	18047940	116958576	185	30563											
SPTY2D1	144108	broad.mit.edu	37	chr11	18637496	18637496	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtatggctttctgttgcctGcctcttctttgacttttcct	8	11	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18637496	A	A	18637496	4	1	13	1	0	0	0	0	0	1	0	0	15244	1328	46	4	1748	4	SPTY2D1	11	18637496	Nonsense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	589556	18637496	116369020	186	30564											
SLC17A6	57084	broad.mit.edu	37	chr11	22363306	22363306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacagcaccatccaccgcGggggcaaggtcatcaaggag	12	13	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22363306	T	T	22363306	3	4	13	1	0	0	0	0	1	0	0	0	14534	1116	39	1	325	1	SLC17A6	11	22363306	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	3725810	22363306	112643210	187	30565											
BBOX1	8424	broad.mit.edu	37	chr11	27148881	27148881	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggcgcttacttcatggcCgacgtagctatgaagcagga	12	10	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27148881	A	A	27148881	2	1	13	1	0	0	0	0	0	0	0	1	1339	644	23	1		1	BBOX1	11	27148881	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	4785575	27148881	107857635	188	30566											
ACCSL	390110	broad.mit.edu	37	chr11	44073113	44073113	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgaggaggctccctgtgcCtgttctgcccagggggatgg	16	11	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44073113	T	T	44073113	1	4	13	0	1	0	0	0	0	0	0	0	134	696	24	4		4	ACCSL	11	44073113	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	16924232	44073113	90933403	189	30567											
LRP4	4038	broad.mit.edu	37	chr11	46910926	46910926	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctccccatcctcacaacAgcctccatggaggctggtgt	8	16	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46910926	G	G	46910926	1	3	13	0	1	0	0	0	0	0	0	0	9046	203	7	5		5	LRP4	11	46910926	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	2837813	46910926	88095590	190	30568											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57087739	57087739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggcgggaaccccacaggCggtcggggctggcaaggacc	18	12	0	1	rs142187077	byFrequency	TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57087739	A	A	57087739	3	1	13	1	0	0	0	0	1	0	0	0	16443	768	27	3	4683	3	TNKS1BP1	11	57087739	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	10176813	57087739	77918777	191	30569											
UBE2L6	9246	broad.mit.edu	37	chr11	57319895	57319895	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattctttctgaacagctccGgattctgtgtcagcaggtca	9	11	5	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57319895	A	A	57319895	3	1	13	1	0	0	0	0	1	0	0	0	16990	1116	39	4	67	4	UBE2L6	11	57319895	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	232156	57319895	77686621	192	30570											
EHBP1L1	254102	broad.mit.edu	37	chr11	65351973	65351973	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagtgactatgcctcgctaGacccactcaacatcaagcag	8	14	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65351973	A	A	65351973	3	1	13	1	0	0	0	0	1	0	0	0	5016	942	33	4	3310	4	EHBP1L1	11	65351973	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	8032078	65351973	69654543	193	30571											
CABP4	57010	broad.mit.edu	37	chr11	67223055	67223055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccgagggtctcgaaagcGcactggcagctctggggagc	16	12	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67223055	T	T	67223055	3	4	13	1	0	0	0	0	1	0	0	0	2559	1087	38	3	163	3	CABP4	11	67223055	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	1871082	67223055	67783461	194	30572											
DNAJB13	374407	broad.mit.edu	37	chr11	73662017	73662017	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggactacaactcccagaGtgcacctgtgcggttgtcag	13	11	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73662017	A	A	73662017	1	1	13	1	0	0	0	0	0	0	0	0	4658	1044	36	4		4	DNAJB13	11	73662017	Translation_Start_Site	SNP	G	TCGA-05-4403-01A-01D-1265-08	6438962	73662017	61344499	195	30573											
PPME1	51400	broad.mit.edu	37	chr11	73950294	73950294	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaggaaaaaggaagatgAcatggaggtgggtaaaaaca	14	3	0	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73950294	G	G	73950294	3	3	13	1	0	0	0	0	1	0	0	0	12448	275	10	5	861	5	PPME1	11	73950294	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	288277	73950294	61056222	196	30574											
RSF1	51773	broad.mit.edu	37	chr11	77412022	77412022	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttttctggttctagaactTtggggggagaatcgggcttc	14	6	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77412022	A	A	77412022	3	1	13	1	0	0	0	0	1	0	0	0	13810	1841	64	5	2117	5	RSF1	11	77412022	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	3461728	77412022	57594494	197	30575											
CNTN5	53942	broad.mit.edu	37	chr11	99715850	99715850	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggaacagaaatagatctgGaaagtgattatcgctacagt	10	5	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99715850	A	A	99715850	3	1	13	1	0	0	0	0	1	0	0	0	3676	1175	41	4	447	4	CNTN5	11	99715850	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	22303828	99715850	35290666	198	30576											
FXYD2	486	broad.mit.edu	37	chr11	117691649	117691649	+	Intron	DEL	T	-	-													gatttgtttccatggactaaTtttccaaggagaccctggaa							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117691649	-	-	117691649	6	5	13	0	1	1	0	1	0	0	0	0	6178	1508	52	0		0	FXYD2	11	117691649	Intron	DEL	T	TCGA-05-4403-01A-01D-1265-08	17975799	117691649	17314867	199	30577											
PVRL1	5818	broad.mit.edu	37	chr11	119547916	119547916	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcaaacccctcaatggtTacctcaggctcatctgtggg	8	14	5	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119547916	C	C	119547916	2	2	13	1	0	0	0	0	0	0	0	1	12947	1741	61	5		5	PVRL1	11	119547916	Silent	SNP	T	TCGA-05-4403-01A-01D-1265-08	1856267	119547916	15458600	200	30578											
PRDM10	56980	broad.mit.edu	37	chr11	129780557	129780557	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggctgcccagatacctgggGagaaagagaaagcaatggta	14	8	0	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129780557	A	A	129780557	1	1	13	0	1	0	0	0	0	0	0	0	12557	1189	41	4		4	PRDM10	11	129780557	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	10232641	129780557	5225959	201	30579											
NCAPD3	23310	broad.mit.edu	37	chr11	134062761	134062761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaccaccgggaccaccCcccgcaaccaggctttctgg	8	20	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134062761	A	A	134062761	3	1	13	1	0	0	0	0	1	0	0	0	10301	623	22	2	2708	2	NCAPD3	11	134062761	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	4282204	134062761	943755	202	30580											
SLC6A12	6539	broad.mit.edu	37	chr12	308150	308150	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggggacgcagtggcccTccagccacgccccacaggca	14	16	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	308150	C	C	308150	1	2	13	0	1	0	0	0	0	0	0	0	14789	1566	54	5		5	SLC6A12	12	308150	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08		308150	133543745	203	30581											
KLRC3	3823	broad.mit.edu	37	chr12	10573032	10573032	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaggtttaattctacttGgaatatttcctgttcggttc	8	6	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10573032	A	A	10573032	4	1	13	1	0	0	0	0	0	1	0	0	8488	1357	47	4	728	4	KLRC3	12	10573032	Nonsense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	10264882	10573032	123278863	204	30582											
KLRC3	3823	broad.mit.edu	37	chr12	10573045	10573045	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctacttggaatatttcctgTtcggttcctgaaatggagct	9	8	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10573045	C	C	10573045	2	2	13	1	0	0	0	0	0	0	0	1	8488	1722	60	5		5	KLRC3	12	10573045	Silent	SNP	T	TCGA-05-4403-01A-01D-1265-08	13	10573045	123278850	205	30583											
KLRC3	3823	broad.mit.edu	37	chr12	10588481	10588481	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctacttggaatatttcctgTtcggttcctgaaatggagct	9	8	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10588481	C	C	10588481	2	2	13	1	0	0	0	0	0	0	0	1	8488	1722	60	5		5	KLRC3	12	10588481	Silent	SNP	T	TCGA-05-4403-01A-01D-1265-08	15436	10588481	123263414	206	30584											
CSDA	8531	broad.mit.edu	37	chr12	10854004	10854004	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtcagatgacagtggaaAgttcaagactgaaagttctt	10	5	3	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10854004	C	C	10854004	1	2	13	0	1	0	0	0	0	0	0	0	3961	87	3	5		5	CSDA	12	10854004	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	265523	10854004	122997891	207	30585											
SLCO1A2	6579	broad.mit.edu	37	chr12	21448521	21448521	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattctcacattcattagaaAacaacatacccttcataaga	3	10	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21448521	G	G	21448521	1	3	13	0	1	0	0	0	0	0	0	0	14836	29	1	5		5	SLCO1A2	12	21448521	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	10594517	21448521	112403374	208	30586											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	13	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	3949764	25398285	108453610	209	30587											
CCDC91	55297	broad.mit.edu	37	chr12	28459852	28459852	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agattaaactcaaagtatctGaagaagaaaaacagagaatt	7	4	2	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28459852	T	T	28459852	4	4	13	1	0	0	0	0	0	1	0	0	2898	1291	45	3	459	3	CCDC91	12	28459852	Nonsense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	3061567	28459852	105392043	210	30588											
CNTN1	1272	broad.mit.edu	37	chr12	41387065	41387065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacagaattaaaacagacGgtgctggtatgtatatacaa	8	6	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41387065	T	T	41387065	3	4	13	1	0	0	0	0	1	0	0	0	3672	1116	39	1	2169	1	CNTN1	12	41387065	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	12927213	41387065	92464830	211	30589											
MLL2	8085	broad.mit.edu	37	chr12	49438031	49438031	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctccgcctgtgcagcagGcccctttttcgtgcgtgtgt	11	15	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49438031	A	A	49438031	3	1	13	1	0	0	0	0	1	0	0	0	9714	1203	42	4	11609	4	MLL2	12	49438031	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	8050966	49438031	84413864	212	30590											
HOXC12	3228	broad.mit.edu	37	chr12	54350298	54350298	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatctggtttcagaaccggaGaatgaaaaagaaaagacttc	10	6	2	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54350298	A	A	54350298	3	1	13	1	0	0	0	0	1	0	0	0	7378	942	33	4	803	4	HOXC12	12	54350298	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	4912267	54350298	79501597	213	30591											
HOXC8	3224	broad.mit.edu	37	chr12	54404779	54404779	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagaggggaggcgaactgagGagatcagagaggggagttta	19	3	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54404779	A	A	54404779	1	1	13	0	1	0	0	0	0	0	0	0	7383	1189	41	4		4	HOXC8	12	54404779	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	54481	54404779	79447116	214	30592											
KIAA0748	9840	broad.mit.edu	37	chr12	55367169	55367169	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctttaggcccaaatcaaatCcatcttcccgtctctgagtt	5	13	4	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55367169	T	T	55367169	1	4	13	0	1	0	0	0	0	0	0	0	8260	870	30	4		4	KIAA0748	12	55367169	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	962390	55367169	78484726	215	30593											
DTX3	196403	broad.mit.edu	37	chr12	58000753	58000753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaagagaccccagcccGgctggcccggcttcgggagg	16	14	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58000753	T	T	58000753	3	4	13	1	0	0	0	0	1	0	0	0	4835	1116	39	1	113	1	DTX3	12	58000753	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	2633584	58000753	75851142	216	30594											
IRAK3	11213	broad.mit.edu	37	chr12	66638373	66638373	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaccataaatatgaccaGcagcagcagtaaacatctgt	7	9	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66638373	C	C	66638373	3	2	13	1	0	0	0	0	1	0	0	0	7894	971	34	4	1029	4	IRAK3	12	66638373	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	8637620	66638373	67213522	217	30595											
TPH2	121278	broad.mit.edu	37	chr12	72332679	72332679	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaagcaggcagctgatcGcacgccccttcctctcaatc	7	19	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72332679	T	T	72332679	1	4	13	0	1	0	0	0	0	0	0	0	16526	1102	38	3		3	TPH2	12	72332679	5'UTR	SNP	G	TCGA-05-4403-01A-01D-1265-08	5694306	72332679	61519216	218	30596											
NAV3	89795	broad.mit.edu	37	chr12	78522410	78522410	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctgaatagtaacctcctCtgaattgttttcctgtcctg	6	10	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78522410	A	A	78522410	1	1	13	0	1	0	0	0	0	0	0	0	10279	928	32	3		3	NAV3	12	78522410	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	6189731	78522410	55329485	219	30597											
NAV3	89795	broad.mit.edu	37	chr12	78582022	78582022	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttactttattttgttcttAtttaggaccaaaaatctcag	4	7	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78582022	T	T	78582022	1	4	13	0	1	0	0	0	0	0	0	0	10279	464	16	5		5	NAV3	12	78582022	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	59612	78582022	55269873	220	30598											
GAS2L3	283431	broad.mit.edu	37	chr12	100973852	100973852	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcattttcttgagatggAtgactccagattcttatcat	6	9	4	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100973852	G	G	100973852	1	3	13	0	1	0	0	0	0	0	0	0	6310	348	12	5		5	GAS2L3	12	100973852	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	22391830	100973852	32878043	221	30599											
GCN1L1	10985	broad.mit.edu	37	chr12	120582884	120582884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtcaggtaaccgagagCagagatggtgtgagaagatg	15	6	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120582884	A	A	120582884	1	1	13	0	1	0	0	0	0	0	0	0	6361	725	25	3		3	GCN1L1	12	120582884	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	19609032	120582884	13269011	222	30600											
DNAH10	196385	broad.mit.edu	37	chr12	124298433	124298433	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacgtccaggagcgatacCgtaccatggcaatgtataac	12	10	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124298433	T	T	124298433	3	4	13	1	0	0	0	0	1	0	0	0	4638	652	23	4	3478	4	DNAH10	12	124298433	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	3715549	124298433	9553462	223	30601											
SLC15A4	121260	broad.mit.edu	37	chr12	129284065	129284065	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcgtggggtctcctagGgactgagtcctgcagacagg	17	9	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129284065	A	A	129284065	1	1	13	0	1	0	0	0	0	0	0	0	14514	1247	43	4		4	SLC15A4	12	129284065	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	4985632	129284065	4567830	224	30602											
TMEM132D	121256	broad.mit.edu	37	chr12	129563191	129563191	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcaccagctgcaccccgAggtctgtgatggtcaccttc	10	15	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129563191	T	T	129563191	3	4	13	1	0	0	0	0	1	0	0	0	16170	304	11	5	1304	5	TMEM132D	12	129563191	Missense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	279126	129563191	4288704	225	30603											
RIMBP2	23504	broad.mit.edu	37	chr12	130912881	130912881	+	Frame_Shift_Del	DEL	G	-	-													cgtctccatggcaacagtgcGgctgggggccaagaaaaggg							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130912881	-	-	130912881	7	5	13	1	0	1	0	1	0	0	0	0	13472	1130	39	0	986	0	RIMBP2	12	130912881	Frame_Shift_Del	DEL	G	TCGA-05-4403-01A-01D-1265-08	1349690	130912881	2939014	226	30604											
RNF17	56163	broad.mit.edu	37	chr13	25374383	25374383	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtattaatttggactaTaactttctaaaaggtgtaac	7	4	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25374383	C	C	25374383	1	2	13	0	1	0	0	0	0	0	0	0	13572	1421	49	5		5	RNF17	13	25374383	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08		25374383	89795495	227	30605											
ATP8A2	51761	broad.mit.edu	37	chr13	26116057	26116057	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttggtttaatcttttagGgtttgagtcacactgctgac	9	7	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26116057	A	A	26116057	3	1	13	1	0	0	0	0	1	0	0	0	1197	1246	43	4	686	4	ATP8A2	13	26116057	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	741674	26116057	89053821	228	30606											
FLT1	2321	broad.mit.edu	37	chr13	29001963	29001963	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaagattgtataattcCctgcatcctcttcagttacg	6	11	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29001963	T	T	29001963	3	4	13	1	0	0	0	0	1	0	0	0	5999	623	22	4	3165	4	FLT1	13	29001963	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	2885906	29001963	86167915	229	30607											
DCLK1	9201	broad.mit.edu	37	chr13	36397148	36397148	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctaaaggcttttcctgctActttcctttcaaaggctcga	6	12	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36397148	T	T	36397148	1	4	13	0	1	0	0	0	0	0	0	0	4324	406	14	5		5	DCLK1	13	36397148	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	7395185	36397148	78772730	230	30608											
POSTN	10631	broad.mit.edu	37	chr13	38143605	38143606	+	Intron	DNP	GC	CT	CT													tgtcataaataatggcatctGcccaataatgaattccagcc							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	38143606	CT	CT	38143605	1	2	13	0	1	0	0	0	0	0	0	0	12354	1334	46	4		4	POSTN	13	38143605	Intron	DNP	GC	TCGA-05-4403-01A-01D-1265-08	1746457	38143605	77026273	231	30609											
DGKH	160851	broad.mit.edu	37	chr13	42734299	42734299	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttggaatcagttcatccTttttaattagcttctttccc	5	9	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42734299	C	C	42734299	1	2	13	0	1	0	0	0	0	0	0	0	4510	1624	56	5		5	DGKH	13	42734299	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	4590694	42734299	72435579	232	30610											
LCP1	3936	broad.mit.edu	37	chr13	46718649	46718649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgtccgctcttctctcGtctcacctagatgaatgaag	7	11	3	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46718649	T	T	46718649	3	4	13	1	0	0	0	0	1	0	0	0	8763	1145	40	3	726	3	LCP1	13	46718649	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	3984350	46718649	68451229	233	30611											
WDFY2	115825	broad.mit.edu	37	chr13	52293267	52293267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagaatggtgcatctctGtgggccatgttcttccaacc	11	10	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52293267	T	T	52293267	1	4	13	0	1	0	0	0	0	0	0	0	17396	1392	48	3		3	WDFY2	13	52293267	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	5574618	52293267	62876611	234	30612											
PCDH17	27253	broad.mit.edu	37	chr13	58207613	58207613	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagggcaatctggactaTgaggaaaacgggatgctgga	16	5	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58207613	C	C	58207613	2	2	13	1	0	0	0	0	0	0	0	1	11606	1471	51	5		5	PCDH17	13	58207613	Silent	SNP	T	TCGA-05-4403-01A-01D-1265-08	5914346	58207613	56962265	235	30613											
FGF14	2259	broad.mit.edu	37	chr13	102520993	102520993	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggcagaaacaacagacaTagaactttctttttgttgtt	7	7	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102520993	C	C	102520993	1	2	13	0	1	0	0	0	0	0	0	0	5900	1421	49	5		5	FGF14	13	102520993	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	44313380	102520993	12648885	236	30614											
OR4K2	390431	broad.mit.edu	37	chr14	20345046	20345046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacaagtggcataattgCgttgtcctgttttattgttt	8	7	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20345046	A	A	20345046	3	1	13	1	0	0	0	0	1	0	0	0	11166	768	27	3	622	3	OR4K2	14	20345046	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08		20345046	87004494	237	30615											
MYH7	4625	broad.mit.edu	37	chr14	23892851	23892851	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccagagcctgttggtgggCctcttgcagagctttcttct	11	11	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23892851	T	T	23892851	3	4	13	1	0	0	0	0	1	0	0	0	10133	739	26	4	2871	4	MYH7	14	23892851	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	3547805	23892851	83456689	238	30616											
NEDD8	4738	broad.mit.edu	37	chr14	24687414	24687414	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctccacacgctccttgattCgctccacctttagagagaca	6	16	0	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24687414	T	T	24687414	3	4	13	1	0	0	0	0	1	0	0	0	10407	884	31	4	179	4	NEDD8	14	24687414	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	794563	24687414	82662126	239	30617											
SEC23A	10484	broad.mit.edu	37	chr14	39530984	39530984	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacttcctagcaatggtgGtcactcggatgcgtctctgc	10	12	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39530984	A	A	39530984	3	1	13	1	0	0	0	0	1	0	0	0	14104	1261	44	4	839	4	SEC23A	14	39530984	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	14843570	39530984	67818556	240	30618											
SEC23A	10484	broad.mit.edu	37	chr14	39555226	39555226	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgaacacacagcagaccaAtggttctcaaactttcgtgt	7	11	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39555226	G	G	39555226	1	3	13	0	1	0	0	0	0	0	0	0	14104	116	4	5		5	SEC23A	14	39555226	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	24242	39555226	67794314	241	30619											
ABHD12B	145447	broad.mit.edu	37	chr14	51355660	51355660	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttacaagggatcaaagtagGctattttgatacagtgtagg	11	4	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51355660	A	A	51355660	1	1	13	0	1	0	0	0	0	0	0	0	77	1218	42	4		4	ABHD12B	14	51355660	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	11800434	51355660	55993880	242	30620											
OTX2	5015	broad.mit.edu	37	chr14	57268910	57268910	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctggcaatggtcgggactGaggtgctagaggggggagtg	21	5	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57268910	T	T	57268910	4	4	13	1	0	0	0	0	0	1	0	0	11415	1294	45	3	460	3	OTX2	14	57268910	Nonsense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	5913250	57268910	50080630	243	30621											
C14orf37	145407	broad.mit.edu	37	chr14	58711507	58711507	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggccggagccgcggaacgAgccacagagaaaaaggttat	16	9	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58711507	C	C	58711507	1	2	13	0	1	0	0	0	0	0	0	0	1784	319	11	5		5	C14orf37	14	58711507	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	1442597	58711507	48638033	244	30622											
RAD51L1	5890	broad.mit.edu	37	chr14	69061084	69061084	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttatgtacattcctatgccAtaccccttgaactctccatc	4	14	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69061084	T	T	69061084	1	4	13	0	1	0	0	0	0	0	0	0	13097	232	8	5		5	RAD51L1	14	69061084	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	10349577	69061084	38288456	245	30623											
NRXN3	9369	broad.mit.edu	37	chr14	79175459	79175459	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttgttttgggctatgtcctGaagcctctttttgggtcatt	11	7	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79175459	T	T	79175459	1	4	13	0	1	0	0	0	0	0	0	0	10762	1305	45	3		3	NRXN3	14	79175459	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	10114375	79175459	28174081	246	30624											
MARK3	4140	broad.mit.edu	37	chr14	103932328	103932328	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaactgagagagagagtatTaagagggaaatacagaattc	13	3	0	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103932328	G	G	103932328	4	3	13	1	0	0	0	0	0	1	0	0	9406	1764	61	5	831	5	MARK3	14	103932328	Nonsense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	24756869	103932328	3417212	247	30625											
KLC1	3831	broad.mit.edu	37	chr14	104145920	104145920	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcacgtgctccgggaggCgcccccaagtggcgcttgcc	16	16	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104145920	T	T	104145920	1	4	13	0	1	0	0	0	0	0	0	0	8404	783	27	4		4	KLC1	14	104145920	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	213592	104145920	3203620	248	30626											
PACS2	23241	broad.mit.edu	37	chr14	105860917	105860917	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgacggcgtggagtgcagcGacgtcaagttcttccagctg	14	11	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105860917	T	T	105860917	3	4	13	1	0	0	0	0	1	0	0	0	11467	1058	37	3	2684	3	PACS2	14	105860917	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	1714997	105860917	1488623	249	30627											
OR4N4	283694	broad.mit.edu	37	chr15	22382965	22382965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtggtcctcatcctcCgcttgcctttttgtggccca	9	15	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22382965	A	A	22382965	3	1	13	1	0	0	0	0	1	0	0	0	11172	652	23	1	495	1	OR4N4	15	22382965	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08		22382965	80148427	250	30628											
GABRG3	2567	broad.mit.edu	37	chr15	27573901	27573901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgccgtaacggccgccgGccttgccctgtgctgtgtgc	16	14	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27573901	T	T	27573901	1	4	13	0	1	0	0	0	0	0	0	0	6233	1218	42	3		3	GABRG3	15	27573901	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	5190936	27573901	74957491	251	30629											
APBA2	321	broad.mit.edu	37	chr15	29385537	29385537	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcggactgcacagccctcagCacagggggcaggagcggccc	15	15	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29385537	G	G	29385537	1	3	13	0	1	0	0	0	0	0	0	0	759	725	25	4		4	APBA2	15	29385537	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1811636	29385537	73145855	252	30630											
RYR3	6263	broad.mit.edu	37	chr15	33992098	33992098	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacactcccccttttgaccaCttaggaaaatacagggaaag	7	11	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33992098	G	G	33992098	1	3	13	0	1	0	0	0	0	0	0	0	13881	580	20	4		4	RYR3	15	33992098	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	4606561	33992098	68539294	253	30631											
AQR	9716	broad.mit.edu	37	chr15	35177045	35177045	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggtgaaaaagaaaaaaaaAgaaattcaatctttgatcca	6	4	2	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35177045	G	G	35177045	1	3	13	0	1	0	0	0	0	0	0	0	837	87	3	5		5	AQR	15	35177045	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	1184947	35177045	67354347	254	30632											
DLL4	54567	broad.mit.edu	37	chr15	41224742	41224742	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatccttcttacttggtgaCtgcagacttggctttcccat	9	11	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41224742	T	T	41224742	1	4	13	0	1	0	0	0	0	0	0	0	4608	580	20	4		4	DLL4	15	41224742	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	6047697	41224742	61306650	255	30633											
HAUS2	55142	broad.mit.edu	37	chr15	42850513	42850513	+	Intron	DEL	T	-	-													atcattttgttttcactttcTtttttttttttttttttttt							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42850513	-	-	42850513	6	5	13	0	1	1	0	1	0	0	0	0	7032	1624	56	0		0	HAUS2	15	42850513	Intron	DEL	T	TCGA-05-4403-01A-01D-1265-08	1625771	42850513	59680879	256	30634											
C15orf33	196951	broad.mit.edu	37	chr15	49907257	49907257	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgggagccctgattaccTgaaattccaagagaaatata	8	9	0	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49907257	C	C	49907257	1	2	13	0	1	0	0	0	0	0	0	0	1804	1595	55	5		5	C15orf33	15	49907257	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	7056744	49907257	52624135	257	30635											
SCG3	29106	broad.mit.edu	37	chr15	51988120	51988120	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattactatcatgaaaacacTgattgactttgtgaagatga	8	5	1	6			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51988120	A	A	51988120	3	1	13	1	0	0	0	0	1	0	0	0	14004	1580	55	5	947	5	SCG3	15	51988120	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	2080863	51988120	50543272	258	30636											
TEX9	374618	broad.mit.edu	37	chr15	56719997	56719997	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactttcttactaaaaaattTagcatttttcactttaggta	3	6	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56719997	C	C	56719997	1	2	13	0	1	0	0	0	0	0	0	0	15907	1769	61	5		5	TEX9	15	56719997	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	4731877	56719997	45811395	259	30637											
VPS13C	54832	broad.mit.edu	37	chr15	62182458	62182458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggttatttcataatcagCctgttccatttcttctgcct	5	11	4	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62182458	A	A	62182458	3	1	13	1	0	0	0	0	1	0	0	0	17318	739	26	3	2118	3	VPS13C	15	62182458	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	5462461	62182458	40348934	260	30638											
SNX1	6642	broad.mit.edu	37	chr15	64422275	64422275	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctacacctcaggcttatGggtcagaacccctaaggagt	9	13	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64422275	A	A	64422275	1	1	13	0	1	0	0	0	0	0	0	0	14994	1363	47	4		4	SNX1	15	64422275	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	2239817	64422275	38109117	261	30639											
ITGA11	22801	broad.mit.edu	37	chr15	68695330	68695330	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggagccagggatgacccGgggcttcctggtgtccatgt	15	12	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68695330	A	A	68695330	3	1	13	1	0	0	0	0	1	0	0	0	7944	1115	39	4	3591	4	ITGA11	15	68695330	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	4273055	68695330	33836062	262	30640											
PSTPIP1	9051	broad.mit.edu	37	chr15	77317756	77317756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgttggggctggggctgGgctggcccacacgggtgagt	21	8	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77317756	T	T	77317756	1	4	13	0	1	0	0	0	0	0	0	0	12827	1247	43	2		2	PSTPIP1	15	77317756	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	8622426	77317756	25213636	263	30641											
IREB2	3658	broad.mit.edu	37	chr15	78768407	78768407	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttgattcataaggacaatGaaggatctcattccttcacc	7	9	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78768407	A	A	78768407	1	1	13	0	1	0	0	0	0	0	0	0	7896	1305	45	4		4	IREB2	15	78768407	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	1450651	78768407	23762985	264	30642											
LRRK1	79705	broad.mit.edu	37	chr15	101601585	101601585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcataaaaatacaggacGccaggtcaagtgaactttca	7	9	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101601585	T	T	101601585	1	4	13	0	1	0	0	0	0	0	0	0	9119	1102	38	3		3	LRRK1	15	101601585	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	22833178	101601585	929807	265	30643											
SNRPA1	6627	broad.mit.edu	37	chr15	101826599	101826599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaactctcctacagtactcCgggctggtgaaaataccaaa	8	12	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101826599	A	A	101826599	1	1	13	0	1	0	0	0	0	0	0	0	14974	667	23	1		1	SNRPA1	15	101826599	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	225014	101826599	704793	266	30644											
RGS11	8786	broad.mit.edu	37	chr16	321473	321473	+	Intron	DEL	C	-	-													actcgatctaggatgtggggCctgtgagtcaggtcccgggc							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	321473	-	-	321473	6	5	13	0	1	1	0	1	0	0	0	0	13403	754	26	0		0	RGS11	16	321473	Intron	DEL	C	TCGA-05-4403-01A-01D-1265-08		321473	90033280	267	30645											
MSLN	10232	broad.mit.edu	37	chr16	816833	816833	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtccccagaactctgcccGgcaaggtgggtccgtgtgct	14	13	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	816833	A	A	816833	1	1	13	0	1	0	0	0	0	0	0	0	9975	1131	39	4		4	MSLN	16	816833	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	495360	816833	89537920	268	30646											
NUBP2	10101	broad.mit.edu	37	chr16	1836639	1836639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagctggccctggcactgCgccatgcaggcaagaaggtg	16	12	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1836639	A	A	1836639	3	1	13	1	0	0	0	0	1	0	0	0	10811	768	27	3	124	3	NUBP2	16	1836639	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	1019806	1836639	88518114	269	30647											
CCNF	899	broad.mit.edu	37	chr16	2481129	2481129	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtctttttttccttcAgtggtccactgtaggtgtgc	9	10	3	0	rs111704404		TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2481129	T	T	2481129	5	4	13	1	0	0	0	0	0	0	1	0	2952	202	7	5	21	5	CCNF	16	2481129	Splice_Site	SNP	A	TCGA-05-4403-01A-01D-1265-08	644490	2481129	87873624	270	30648											
SRRM2	23524	broad.mit.edu	37	chr16	2807666	2807669	+	Intron	DEL	CCTC	-	-													cttttccttacgtgggacttCctccctgctttcgtctgcct							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2807669	-	-	2807666	6	5	13	0	1	1	0	1	0	0	0	0	15287	870	30	0		0	SRRM2	16	2807666	Intron	DEL	CCTC	TCGA-05-4403-01A-01D-1265-08	326537	2807666	87547087	271	30649											
ZNF213	7760	broad.mit.edu	37	chr16	3187321	3187321	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccaggaccaggcccctgggGagggagaagggcttctgatt	16	11	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3187321	A	A	3187321	3	1	13	1	0	0	0	0	1	0	0	0	17895	1175	41	4	42	4	ZNF213	16	3187321	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	379655	3187321	87167432	272	30650											
A2BP1	54715	broad.mit.edu	37	chr16	7568009	7568009	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagatgacctgagattGgtccatctcaggctggtggc	15	8	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7568009	T	T	7568009	1	4	13	0	1	0	0	0	0	0	0	0	3	1363	47	2		2	A2BP1	16	7568009	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	4380688	7568009	82786744	273	30651											
SBK1	388228	broad.mit.edu	37	chr16	28330266	28330266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgggtgcatccagtgcGgaggcactgggagagggggc	21	8	0	1	rs77324875	by1000genomes	TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28330266	A	A	28330266	1	1	13	0	1	0	0	0	0	0	0	0	13972	1131	39	4		4	SBK1	16	28330266	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	20762257	28330266	62024487	274	30652											
SH2B1	25970	broad.mit.edu	37	chr16	28877776	28877776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcccctggctgtgctgGgcccttctcgatcatctgag	14	13	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28877776	T	T	28877776	3	4	13	1	0	0	0	0	1	0	0	0	14340	1232	43	2	363	2	SH2B1	16	28877776	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	547510	28877776	61476977	275	30653											
ITGAL	3683	broad.mit.edu	37	chr16	30505572	30505572	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccctcccggcaaaagacttCgttgctggcctcgggagccc	12	16	0	1	rs145951975		TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30505572	T	T	30505572	3	4	13	1	0	0	0	0	1	0	0	0	7956	893	31	4	1299	4	ITGAL	16	30505572	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	1627796	30505572	59849181	276	30654											
ITGAM	3684	broad.mit.edu	37	chr16	31340628	31340628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcatcaatatcaggtgGgcagctgggacgtctgggtc	15	9	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31340628	T	T	31340628	1	4	13	0	1	0	0	0	0	0	0	0	7957	1247	43	2		2	ITGAM	16	31340628	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	835056	31340628	59014125	277	30655											
MT1B	4490	broad.mit.edu	37	chr16	56685782	56685783	+	5'Flank	DNP	CC	AA	AA													cccgactataaagggagcagCcagctcctgggctccatcac							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	56685783	AA	AA	56685782	1	1	13	0	1	0	0	0	0	0	0	0	9992	754	26	3		3	MT1B	16	56685782	5'Flank	DNP	CC	TCGA-05-4403-01A-01D-1265-08	25345154	56685782	33668971	278	30656											
KIFC3	3801	broad.mit.edu	37	chr16	57803500	57803500	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accctcccacccactgccctCgctcacctcggccttgacac	5	23	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57803500	A	A	57803500	1	1	13	0	1	0	0	0	0	0	0	0	8384	899	31	3		3	KIFC3	16	57803500	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1117718	57803500	32551253	279	30657											
SETD6	79918	broad.mit.edu	37	chr16	58550115	58550115	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcctcagagcgagttgCgctgcagagccagtcgggct	14	12	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58550115	T	T	58550115	3	4	13	1	0	0	0	0	1	0	0	0	14248	768	27	4	354	4	SETD6	16	58550115	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	746615	58550115	31804638	280	30658											
PDP2	57546	broad.mit.edu	37	chr16	66919297	66919297	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggagaggggcttcaatacCgaggccctcaacatttacca	10	12	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66919297	G	G	66919297	2	3	13	1	0	0	0	0	0	0	0	1	11780	639	23	4		4	PDP2	16	66919297	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	8369182	66919297	23435456	281	30659											
DHODH	1723	broad.mit.edu	37	chr16	72050929	72050931	+	In_Frame_Del	DEL	ATT	-	-													cttgtgctctgcaggtatggAtttaacagtcacgggctttc							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72050931	-	-	72050929	7	5	13	1	0	1	0	1	0	0	0	0	4524	320	12	0	455	0	DHODH	16	72050929	In_Frame_Del	DEL	ATT	TCGA-05-4403-01A-01D-1265-08	5131632	72050929	18303824	282	30660											
GLG1	2734	broad.mit.edu	37	chr16	74516929	74516929	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaatactcacttccaatcCcgggagatgaaatactgcag	7	11	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74516929	A	A	74516929	2	1	13	1	0	0	0	0	0	0	0	1	6500	610	22	2		2	GLG1	16	74516929	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	2466000	74516929	15837824	283	30661											
PLCG2	5336	broad.mit.edu	37	chr16	81924973	81924973	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccgcctgttgatttcccGcatcagagctgttcttcccc	8	15	2	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81924973	A	A	81924973	1	1	13	0	1	0	0	0	0	0	0	0	12131	1102	38	4		4	PLCG2	16	81924973	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	7408044	81924973	8429780	284	30662											
HSDL1	83693	broad.mit.edu	37	chr16	84164817	84164818	+	Frame_Shift_Ins	INS	-	T	T													gtcacagatgacagtgatgcINStttttctggccgtataccag							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84164818	T	T	84164817	7	5	13	1	0	1	1	0	0	0	0	0	7460	797	28	0	898	0	HSDL1	16	84164817	Frame_Shift_Ins	INS	-	TCGA-05-4403-01A-01D-1265-08	2239844	84164817	6189936	285	30663											
ZCCHC14	23174	broad.mit.edu	37	chr16	87446014	87446014	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagcagtttgatgggcggAcgggcggcgtggaggactgt	20	7	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87446014	G	G	87446014	2	3	13	1	0	0	0	0	0	0	0	1	17709	262	10	5		5	ZCCHC14	16	87446014	Silent	SNP	A	TCGA-05-4403-01A-01D-1265-08	3281197	87446014	2908739	286	30664											
ZMYND15	84225	broad.mit.edu	37	chr17	4648196	4648196	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtttgctctcaaggatacGtggctgaggtctctgccccg	14	11	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4648196	A	A	4648196	2	1	13	1	0	0	0	0	0	0	0	1	17834	1132	40	4		4	ZMYND15	17	4648196	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08		4648196	76547014	287	30665											
USP6	9098	broad.mit.edu	37	chr17	5042700	5042700	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccccgccatgggcatctcGtttttccacgccctgtcctg	8	17	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5042700	A	A	5042700	3	1	13	1	0	0	0	0	1	0	0	0	17213	1145	40	4	1279	4	USP6	17	5042700	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	394504	5042700	76152510	288	30666											
SCO1	6341	broad.mit.edu	37	chr17	10596036	10596036	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaaaaacctggtaacAtgaagtaaacatatactttg	9	5	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10596036	G	G	10596036	1	3	13	0	1	0	0	0	0	0	0	0	14044	232	8	5		5	SCO1	17	10596036	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	5553336	10596036	70599174	289	30667											
NCOR1	9611	broad.mit.edu	37	chr17	15965387	15965388	+	Intron	INS	-	T	T													aaatgtatatgcaagagacaINSttttttgtcaaaatatgtac							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15965388	T	T	15965387	6	5	13	0	1	1	1	0	0	0	0	0	10330	232	8	0		0	NCOR1	17	15965387	Intron	INS	-	TCGA-05-4403-01A-01D-1265-08	5369351	15965387	65229823	290	30668											
C17orf66	256957	broad.mit.edu	37	chr17	34192185	34192185	+	Intron	DEL	G	-	-													actttcctagaagatgtggaGggtgagaagaatatggaggc							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34192185	-	-	34192185	6	5	13	0	1	1	0	1	0	0	0	0	1890	1015	35	0		0	C17orf66	17	34192185	Intron	DEL	G	TCGA-05-4403-01A-01D-1265-08	18226798	34192185	47003025	291	30669											
MED1	5469	broad.mit.edu	37	chr17	37564483	37564483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggaagaatttgtgctcaCccccatctggccgtccagtg	11	13	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37564483	A	A	37564483	3	1	13	1	0	0	0	0	1	0	0	0	9518	507	18	3	758	3	MED1	17	37564483	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	3372298	37564483	43630727	292	30670											
C17orf104	284071	broad.mit.edu	37	chr17	42745037	42745037	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaataaagcagccaaaTggattttgtgataactattc	6	5	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42745037	C	C	42745037	2	2	13	1	0	0	0	0	0	0	0	1	1865	1461	51	5		5	C17orf104	17	42745037	Silent	SNP	T	TCGA-05-4403-01A-01D-1265-08	5180554	42745037	38450173	293	30671											
ITGB3	3690	broad.mit.edu	37	chr17	45377712	45377713	+	Intron	INS	-	GT	GT													tcttacaggcgcgcgcgcgcINSgtgtgtgtgtgtgtgtgtgt					rs10221263	by1000genomes	TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	45377713	GT	GT	45377712	6	5	13	0	1	1	1	0	0	0	0	0	7965	783	27	0		0	ITGB3	17	45377712	Intron	INS	-	TCGA-05-4403-01A-01D-1265-08	2632675	45377712	35817498	294	30672											
TTLL6	284076	broad.mit.edu	37	chr17	46846245	46846245	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcattgtctacttacctgTatgtctttatcaatccatcc	3	12	4	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46846245	C	C	46846245	1	2	13	0	1	0	0	0	0	0	0	0	16857	1653	57	5		5	TTLL6	17	46846245	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	1468533	46846245	34348965	295	30673											
ANKFN1	162282	broad.mit.edu	37	chr17	54554984	54554984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaacattctctgccacGtgaagatccgtgaaaacaat	7	12	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54554984	C	C	54554984	3	2	13	1	0	0	0	0	1	0	0	0	625	1145	40	4	1976	4	ANKFN1	17	54554984	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	7708739	54554984	26640226	296	30674											
TBX2	6909	broad.mit.edu	37	chr17	59485386	59485386	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacttcaggcaagatgtcTaaccctcgtcttgttctgtt	8	10	4	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59485386	C	C	59485386	1	2	13	0	1	0	0	0	0	0	0	0	15777	1537	53	5		5	TBX2	17	59485386	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	4930402	59485386	21709824	297	30675											
ACE	1636	broad.mit.edu	37	chr17	61560933	61560933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcaggtattagcgccccCaccccacccacccccagtac	5	21	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61560933	A	A	61560933	1	1	13	0	1	0	0	0	0	0	0	0	136	609	21	2		2	ACE	17	61560933	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	2075547	61560933	19634277	298	30676											
SFRS2	6427	broad.mit.edu	37	chr17	74733003	74733003	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccgcagctcgcggccgtcCagcacggccccgtccatggc	12	20	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74733003	G	G	74733003	2	3	13	1	0	0	0	0	0	0	0	1	14288	581	21	4		4	SFRS2	17	74733003	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	13172070	74733003	6462207	299	30677											
TMC8	147138	broad.mit.edu	37	chr17	76129381	76129381	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtaagacgggacactccCtacctgatggggggattgca	13	10	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76129381	T	T	76129381	1	4	13	0	1	0	0	0	0	0	0	0	16114	696	24	4		4	TMC8	17	76129381	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1396378	76129381	5065829	300	30678											
LAMA1	284217	broad.mit.edu	37	chr18	7036072	7036072	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccgtgtatttcaggaatcCgccaaacgcagtcagctgaa	9	12	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7036072	T	T	7036072	3	4	13	1	0	0	0	0	1	0	0	0	8677	661	23	4	7678	4	LAMA1	18	7036072	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08		7036072	71041176	301	30679											
ROCK1	6093	broad.mit.edu	37	chr18	18548913	18548913	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaattattcaaataagtaTacattacatagtaactttca	2	5	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18548913	C	C	18548913	1	2	13	0	1	0	0	0	0	0	0	0	13628	1421	49	5		5	ROCK1	18	18548913	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	11512841	18548913	59528335	302	30680											
ZNF521	25925	broad.mit.edu	37	chr18	22932208	22932208	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagggggcccgccaagacCcggactggaggcgccggccg	19	14	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22932208	G	G	22932208	1	3	13	0	1	0	0	0	0	0	0	0	18092	638	22	4		4	ZNF521	18	22932208	5'UTR	SNP	C	TCGA-05-4403-01A-01D-1265-08	4383295	22932208	55145040	303	30681											
DSC1	1823	broad.mit.edu	37	chr18	28714691	28714691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgtcaatttgaggtgCgtgatcgttgtaatcatcca	9	7	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28714691	A	A	28714691	3	1	13	1	0	0	0	0	1	0	0	0	4805	768	27	3	1024	3	DSC1	18	28714691	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	5782483	28714691	49362557	304	30682											
TTR	7276	broad.mit.edu	37	chr18	29171841	29171841	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctgggagcagccatcaCagaagtccactcattcttgg	11	12	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29171841	A	A	29171841	1	1	13	0	1	0	0	0	0	0	0	0	16864	493	17	3		3	TTR	18	29171841	5'UTR	SNP	C	TCGA-05-4403-01A-01D-1265-08	457150	29171841	48905407	305	30683											
KIAA1012	22878	broad.mit.edu	37	chr18	29432343	29432343	+	Intron	DEL	C	-	-													aattactgcgataagccttgCcaaaaatacccagatatgct							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29432343	-	-	29432343	6	5	13	0	1	1	0	1	0	0	0	0	8274	754	26	0		0	KIAA1012	18	29432343	Intron	DEL	C	TCGA-05-4403-01A-01D-1265-08	260502	29432343	48644905	306	30684											
DTNA	1837	broad.mit.edu	37	chr18	32455081	32455081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggattaccaacacaattacCtaggatttcctcctgctttg	6	11	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32455081	A	A	32455081	1	1	13	0	1	0	0	0	0	0	0	0	4828	696	24	2		2	DTNA	18	32455081	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	3022738	32455081	45622167	307	30685											
WDR7	23335	broad.mit.edu	37	chr18	54398770	54398770	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctcttaaaaatatggCccatcataagctacaaaccc	5	12	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54398770	T	T	54398770	3	4	13	1	0	0	0	0	1	0	0	0	17447	739	26	4	1981	4	WDR7	18	54398770	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	21943689	54398770	23678478	308	30686											
WDR7	23335	broad.mit.edu	37	chr18	54603282	54603282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtactgaaatgaacacatGtgtctgtgtgcatgtacact	9	7	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54603282	T	T	54603282	1	4	13	0	1	0	0	0	0	0	0	0	17447	1392	48	3		3	WDR7	18	54603282	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	204512	54603282	23473966	309	30687											
THEG	51298	broad.mit.edu	37	chr19	371054	371054	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcggctctgaagacagtgaGagatcaaaagaaagctgctc	13	8	2	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	371054	C	C	371054	1	2	13	0	1	0	0	0	0	0	0	0	15980	957	33	4		4	THEG	19	371054	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08		371054	58757929	310	30688											
MUC16	94025	broad.mit.edu	37	chr19	9045932	9045932	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagaggcactggaaagcccaGagacagcaggggaaacagtc	14	9	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9045932	A	A	9045932	3	1	13	1	0	0	0	0	1	0	0	0	10067	942	33	4	8144	4	MUC16	19	9045932	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	8674878	9045932	50083051	311	30689											
MUC16	94025	broad.mit.edu	37	chr19	9088208	9088208	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttgttggaatattacttgGtgtcaaggaagtcgtggaag	13	4	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9088208	C	C	9088208	3	2	13	1	0	0	0	0	1	0	0	0	10067	1261	44	4	40252	4	MUC16	19	9088208	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	42276	9088208	50040775	312	30690											
ICAM1	3383	broad.mit.edu	37	chr19	10385771	10385771	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacgtgcaggggcacctgCagaggcctgggggaatcttt	17	9	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10385771	T	T	10385771	1	4	13	0	1	0	0	0	0	0	0	0	7549	725	25	4		4	ICAM1	19	10385771	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1297563	10385771	48743212	313	30691											
ZNF799	90576	broad.mit.edu	37	chr19	12491138	12491138	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttacatttatagattttctCcctagtgtgagtcctttcat	5	8	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12491138	A	A	12491138	1	1	13	0	1	0	0	0	0	0	0	0	18295	870	30	3		3	ZNF799	19	12491138	3'UTR	SNP	C	TCGA-05-4403-01A-01D-1265-08	2105367	12491138	46637845	314	30692											
KCNN1	3780	broad.mit.edu	37	chr19	18096157	18096157	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgaccagcaacttcctGggggccatgtggctgatttc	13	10	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18096157	A	A	18096157	2	1	13	1	0	0	0	0	0	0	0	1	8148	1335	47	4		4	KCNN1	19	18096157	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	5605019	18096157	41032826	315	30693											
KIAA0355	9710	broad.mit.edu	37	chr19	34787316	34787316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgagtcccttggcagtGcgggcacgagcacacttccc	12	15	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34787316	T	T	34787316	1	4	13	0	1	0	0	0	0	0	0	0	8240	1334	46	3		3	KIAA0355	19	34787316	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	16691159	34787316	24341667	316	30694											
KIRREL2	84063	broad.mit.edu	37	chr19	36353590	36353590	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctggccttgggccttggCtccagtcccatttccagctc	10	16	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36353590	T	T	36353590	1	4	13	0	1	0	0	0	0	0	0	0	8396	812	28	4		4	KIRREL2	19	36353590	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1566274	36353590	22775393	317	30695											
HKR1	284459	broad.mit.edu	37	chr19	37835509	37835509	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttcatatatttatttttCagctggcaagcagatgaatt	6	5	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37835509	T	T	37835509	1	4	13	0	1	0	0	0	0	0	0	0	7261	841	29	4		4	HKR1	19	37835509	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1481919	37835509	21293474	318	30696											
HKR1	284459	broad.mit.edu	37	chr19	37854370	37854370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttatgtgcagggagtGtggcagaaggtttcggcaga	16	6	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37854370	T	T	37854370	3	4	13	1	0	0	0	0	1	0	0	0	7261	1377	48	3	1687	3	HKR1	19	37854370	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	18861	37854370	21274613	319	30697											
RYR1	6261	broad.mit.edu	37	chr19	38985136	38985136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgcgtgccctgccgcGggcgtacaccatctcaccgt	12	17	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38985136	T	T	38985136	3	4	13	1	0	0	0	0	1	0	0	0	13879	1116	39	1	6573	1	RYR1	19	38985136	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	1130766	38985136	20143847	320	30698											
DYRK1B	9149	broad.mit.edu	37	chr19	40317399	40317399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactgctgcctgccgggcCcgtgttggtggcctcgtcgg	17	14	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40317399	A	A	40317399	3	1	13	1	0	0	0	0	1	0	0	0	4895	623	22	2	577	2	DYRK1B	19	40317399	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	1332263	40317399	18811584	321	30699											
PSG1	5669	broad.mit.edu	37	chr19	43359626	43359626	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggcttctttcatttttTagaaccccatcctctccagg	6	13	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43359626	C	C	43359626	1	2	13	0	1	0	0	0	0	0	0	0	12759	1769	61	5		5	PSG1	19	43359626	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	3042227	43359626	15769357	322	30700											
PSG5	5673	broad.mit.edu	37	chr19	43674196	43674196	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccaggataagagaaaaGgccatcatacctgccagtct	10	10	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43674196	C	C	43674196	1	2	13	0	1	0	0	0	0	0	0	0	12764	1015	35	4		4	PSG5	19	43674196	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	314570	43674196	15454787	323	30701											
PSG4	5672	broad.mit.edu	37	chr19	43697576	43697576	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacacagaaacaatgaaCagagctgcaatctcataacc	5	10	1	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43697576	G	G	43697576	1	3	13	0	1	0	0	0	0	0	0	0	12763	493	17	4		4	PSG4	19	43697576	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	23380	43697576	15431407	324	30702											
GYS1	2997	broad.mit.edu	37	chr19	49473086	49473086	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggaaaggccttggacagCgccatgtggcgcgcagacat	14	11	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49473086	T	T	49473086	2	4	13	1	0	0	0	0	0	0	0	1	6977	755	27	4		4	GYS1	19	49473086	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	5775510	49473086	9655897	325	30703											
ZNF845	91664	broad.mit.edu	37	chr19	53857024	53857024	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacaagtgtactgagtgtGgcaaagcctttagtgggcag	13	7	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53857024	T	T	53857024	1	4	13	0	1	0	0	0	0	0	0	0	18320	1363	47	2		2	ZNF845	19	53857024	3'UTR	SNP	G	TCGA-05-4403-01A-01D-1265-08	4383938	53857024	5271959	326	30704											
NLRP12	91662	broad.mit.edu	37	chr19	54314312	54314312	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggcgctcctcgtctggctCaaagagggtctctatcttga	13	11	4	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54314312	T	T	54314312	3	4	13	1	0	0	0	0	1	0	0	0	10569	835	29	4	2712	4	NLRP12	19	54314312	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	457288	54314312	4814671	327	30705											
PRKCG	5582	broad.mit.edu	37	chr19	54408044	54408044	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctcacaaccacacacCccattgctgtctctgtgcct	6	18	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54408044	T	T	54408044	1	4	13	0	1	0	0	0	0	0	0	0	12618	638	22	4		4	PRKCG	19	54408044	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	93732	54408044	4720939	328	30706											
LILRA6	79168	broad.mit.edu	37	chr19	54772210	54772210	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatattacaacaggtgctTccagtgattttgctaatgcc	7	10	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54772210	A	A	54772210	1	1	13	0	1	0	0	0	0	0	0	0	8861	1798	62	5		5	LILRA6	19	54772210	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	364166	54772210	4356773	329	30707											
KIR3DL1	3811	broad.mit.edu	37	chr19	55362609	55362609	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgccaagacacacagtgcAgtgggggcagcagggtgccc	16	12	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55362609	T	T	55362609	1	4	13	0	1	0	0	0	0	0	0	0	8391	203	7	5		5	KIR3DL1	19	55362609	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	590399	55362609	3766374	330	30708											
PTPRH	5794	broad.mit.edu	37	chr19	55709950	55709950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaggagctcccaaagtcCtttcatctttttccttcccc	4	17	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55709950	A	A	55709950	1	1	13	0	1	0	0	0	0	0	0	0	12911	696	24	2		2	PTPRH	19	55709950	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	347341	55709950	3419033	331	30709											
BRSK1	84446	broad.mit.edu	37	chr19	55814152	55814152	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccatccaacggagagctGgaccccgacgtcctagagag	12	14	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55814152	A	A	55814152	2	1	13	1	0	0	0	0	0	0	0	1	1532	1335	47	4		4	BRSK1	19	55814152	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	104202	55814152	3314831	332	30710											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56702190	56702190	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggactaacccctgtggatccAagtcttcatactcactggga	9	12	3	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56702190	T	T	56702190	1	4	13	0	1	0	0	0	0	0	0	0	18368	145	5	5		5	ZSCAN5B	19	56702190	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	888038	56702190	2426793	333	30711											
PEG3	5178	broad.mit.edu	37	chr19	57334086	57334086	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcacagcacatgctctatAtctcctactgggaaagaaag	9	10	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57334086	T	T	57334086	1	4	13	0	1	0	0	0	0	0	0	0	11814	464	16	5		5	PEG3	19	57334086	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	631896	57334086	1794897	334	30712											
ZSCAN4	201516	broad.mit.edu	37	chr19	58190033	58190033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcttccagatatcagaCctacgggtgcatcagataat	9	10	3	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58190033	A	A	58190033	3	1	13	1	0	0	0	0	1	0	0	0	18366	506	18	3	1072	3	ZSCAN4	19	58190033	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	855947	58190033	938950	335	30713											
TGM3	7053	broad.mit.edu	37	chr20	2320934	2320934	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagggctggaggggccccGtaacccagagagacagctag	15	12	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2320934	A	A	2320934	1	1	13	0	1	0	0	0	0	0	0	0	15954	1160	40	4		4	TGM3	20	2320934	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08		2320934	60704586	336	30714											
SEC23B	10483	broad.mit.edu	37	chr20	18508362	18508362	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaactcagagaagctttcAggtagctctgggctatggtt	12	9	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18508362	T	T	18508362	1	4	13	0	1	0	0	0	0	0	0	0	14105	203	7	5		5	SEC23B	20	18508362	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	16187428	18508362	44517158	337	30715											
ACTR5	79913	broad.mit.edu	37	chr20	37395062	37395062	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttctatcttcctgaaccAtttccttggattttgcattg	5	11	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37395062	G	G	37395062	1	3	13	0	1	0	0	0	0	0	0	0	215	232	8	5		5	ACTR5	20	37395062	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	18886700	37395062	25630458	338	30716											
IFT52	51098	broad.mit.edu	37	chr20	42265860	42265860	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagatgaaacgttctcctctGagaaggcacggctggctcag	12	10	3	3			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42265860	T	T	42265860	4	4	13	1	0	0	0	0	0	1	0	0	7631	1291	45	3	1129	3	IFT52	20	42265860	Nonsense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	4870798	42265860	20759660	339	30717											
TOX2	84969	broad.mit.edu	37	chr20	42574596	42574596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgcgggcgcgttctctcGctgcctgggcttctgtggaa	15	12	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42574596	T	T	42574596	3	4	13	1	0	0	0	0	1	0	0	0	16502	1087	38	3	149	3	TOX2	20	42574596	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	308736	42574596	20450924	340	30718											
CTCFL	140690	broad.mit.edu	37	chr20	56090656	56090656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttatcatgaaggcacgCaaaaatccacttttaccttt	4	10	2	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56090656	A	A	56090656	1	1	13	0	1	0	0	0	0	0	0	0	4035	725	25	3		3	CTCFL	20	56090656	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	13516060	56090656	6934864	341	30719											
GNAS	2778	broad.mit.edu	37	chr20	57430246	57430246	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagaaggtacccctggcGgagaagcgcagacagatgcg	15	10	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57430246	A	A	57430246	2	1	13	1	0	0	0	0	0	0	0	1	6574	1116	39	4		4	GNAS	20	57430246	Silent	SNP	G	TCGA-05-4403-01A-01D-1265-08	1339590	57430246	5595274	342	30720											
ZNF831	128611	broad.mit.edu	37	chr20	57766823	57766823	+	Frame_Shift_Del	DEL	C	-	-													gagacccctttctccgggtgCccacgtgcccctacttgcca							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57766823	-	-	57766823	7	5	13	1	0	1	0	1	0	0	0	0	18314	739	26	0	751	0	ZNF831	20	57766823	Frame_Shift_Del	DEL	C	TCGA-05-4403-01A-01D-1265-08	336577	57766823	5258697	343	30721											
OSBPL2	9885	broad.mit.edu	37	chr20	60861678	60861678	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgacagcgacgtggctgacGacgtgcctgtggcccaggag	16	12	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60861678	A	A	60861678	3	1	13	1	0	0	0	0	1	0	0	0	11372	1058	37	4	1074	4	OSBPL2	20	60861678	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	3094855	60861678	2163842	344	30722											
C20orf166	128826	broad.mit.edu	37	chr20	61150822	61150822	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatggatacggggtccCgggaggcagccttcaccagg	14	13	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61150822	A	A	61150822	1	1	13	0	1	0	0	0	0	0	0	0	2117	667	23	1		1	C20orf166	20	61150822	5'UTR	SNP	C	TCGA-05-4403-01A-01D-1265-08	289144	61150822	1874698	345	30723											
ZNF512B	57473	broad.mit.edu	37	chr20	62598190	62598191	+	Intron	INS	-	C	C													agggcctctgcccaaacacaINSccccgaggcctcctctcccc							TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62598191	C	C	62598190	6	5	13	0	1	1	1	0	0	0	0	0	18084	174	6	0		0	ZNF512B	20	62598190	Intron	INS	-	TCGA-05-4403-01A-01D-1265-08	1447368	62598190	427330	346	30724											
CCT8	10694	broad.mit.edu	37	chr21	30437138	30437138	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgttcagtagttgaattaGatatttgaagactataaatc	7	3	1	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30437138	C	C	30437138	1	2	13	0	1	0	0	0	0	0	0	0	2990	957	33	4		4	CCT8	21	30437138	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08		30437138	17692757	347	30725											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31655088	31655088	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtaatccaggagccagaGatttccttggtagctactgg	12	9	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31655088	T	T	31655088	3	4	13	1	0	0	0	0	1	0	0	0	8614	942	33	3	605	3	KRTAP24-1	21	31655088	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	1217950	31655088	16474807	348	30726											
TIAM1	7074	broad.mit.edu	37	chr21	32559572	32559572	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgtatttttagatcactcTggaagtcactacttgtaaaa	7	6	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32559572	A	A	32559572	1	1	13	0	1	0	0	0	0	0	0	0	16013	1595	55	5		5	TIAM1	21	32559572	Intron	SNP	T	TCGA-05-4403-01A-01D-1265-08	904484	32559572	15570323	349	30727											
TRAPPC10	7109	broad.mit.edu	37	chr21	45506569	45506569	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaattcatggagatcccaAaggagcaaatctttcatagt	9	7	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45506569	G	G	45506569	1	3	13	0	1	0	0	0	0	0	0	0	16581	29	1	5		5	TRAPPC10	21	45506569	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	12946997	45506569	2623326	350	30728											
AIRE	326	broad.mit.edu	37	chr21	45713696	45713696	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctcctggtgcgcgttgcGgggtgtgcggagatggtacg	20	8	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45713696	A	A	45713696	3	1	13	1	0	0	0	0	1	0	0	0	437	1116	39	4	1633	4	AIRE	21	45713696	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	207127	45713696	2416199	351	30729											
PRMT2	3275	broad.mit.edu	37	chr21	48068529	48068529	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacactatgcgcggcctagaGcggtgagtggggtctcgagc	16	11	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48068529	A	A	48068529	3	1	13	1	0	0	0	0	1	0	0	0	12643	971	34	4	501	4	PRMT2	21	48068529	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	2354833	48068529	61366	352	30730											
RAB36	9609	broad.mit.edu	37	chr22	23495307	23495307	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgagattgctgggattccCtatagcctccagatgtaagt	10	8	0	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23495307	T	T	23495307	2	4	13	1	0	0	0	0	0	0	0	1	13034	668	24	4		4	RAB36	22	23495307	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08		23495307	27809259	353	30731											
BCR	613	broad.mit.edu	37	chr22	23632623	23632623	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtactggtttggggaggaGggttgcagcggccgagccag	19	7	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23632623	C	C	23632623	1	2	13	0	1	0	0	0	0	0	0	0	1393	1015	35	4		4	BCR	22	23632623	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	137316	23632623	27671943	354	30732											
MMP11	4320	broad.mit.edu	37	chr22	24122621	24122621	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggccctaaaggtatggagCgatgtgacgccactcacctt	12	11	1	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24122621	T	T	24122621	2	4	13	1	0	0	0	0	0	0	0	1	9743	767	27	4		4	MMP11	22	24122621	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	489998	24122621	27181945	355	30733											
MYO18B	84700	broad.mit.edu	37	chr22	26423541	26423541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaggaatcccacgacttgCgggtgacggtggcgagcgaa	15	11	0	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26423541	T	T	26423541	3	4	13	1	0	0	0	0	1	0	0	0	10160	768	27	4	7767	4	MYO18B	22	26423541	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	2300920	26423541	24881025	356	30734											
CRYBA4	1413	broad.mit.edu	37	chr22	27021696	27021696	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcgccacttcaagctgtgtGacaagggctgttcagtctct	11	11	3	1			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27021696	T	T	27021696	1	4	13	0	1	0	0	0	0	0	0	0	3941	1305	45	3		3	CRYBA4	22	27021696	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	598155	27021696	24282870	357	30735											
SELM	140606	broad.mit.edu	37	chr22	31501067	31501067	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggtagaagccgagctcctgCactagcgcattgatctcttc	10	13	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31501067	G	G	31501067	2	3	13	1	0	0	0	0	0	0	0	1	14130	697	25	4		4	SELM	22	31501067	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08	4479371	31501067	19803499	358	30736											
SYN3	8224	broad.mit.edu	37	chr22	32934108	32934108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttctcctgtaccagaaCaaacaacacattgagggaat	9	9	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32934108	A	A	32934108	1	1	13	0	1	0	0	0	0	0	0	0	15561	493	17	3		3	SYN3	22	32934108	Intron	SNP	C	TCGA-05-4403-01A-01D-1265-08	1433041	32934108	18370458	359	30737											
IL3RA	3563	broad.mit.edu	37	chrX	1471347	1471347	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctggtgcggggcaggagCgcagccttcggtatcccctg	15	13	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1471347	T	T	1471347	2	4	13	1	0	0	0	0	0	0	0	1	7765	767	27	4		4	IL3RA	23	1471347	Silent	SNP	C	TCGA-05-4403-01A-01D-1265-08		1471347	153799213	360	30738											
NHS	4810	broad.mit.edu	37	chrX	17745407	17745407	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagtcccagaaagaaaaTcctcactacagcaaccctct	4	14	2	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17745407	C	C	17745407	3	2	13	1	0	0	0	0	1	0	0	0	10506	1435	50	5	3245	5	NHS	23	17745407	Missense_Mutation	SNP	T	TCGA-05-4403-01A-01D-1265-08	16274060	17745407	137525153	361	30739											
FAM47B	170062	broad.mit.edu	37	chrX	34961502	34961502	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctggtaaatatccctgtgGggaatcctgcccgcggcctc	12	13	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34961502	C	C	34961502	3	2	13	1	0	0	0	0	1	0	0	0	5621	1232	43	4	556	4	FAM47B	23	34961502	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	17216095	34961502	120309058	362	30740											
CXorf22	170063	broad.mit.edu	37	chrX	35974187	35974187	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccttgtttcatgggtgaAcgttcagaaattcagtgcat	9	7	3	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35974187	G	G	35974187	2	3	13	1	0	0	0	0	0	0	0	1	4135	40	2	5		5	CXorf22	23	35974187	Silent	SNP	A	TCGA-05-4403-01A-01D-1265-08	1012685	35974187	119296373	363	30741											
RBM10	8241	broad.mit.edu	37	chrX	47032557	47032557	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgcagtcgcacggcgtgCaagcacgggaggttcggctg	17	11	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47032557	T	T	47032557	4	4	13	1	0	0	0	0	0	1	0	0	13219	711	25	4	477	4	RBM10	23	47032557	Nonsense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08	11058370	47032557	108238003	364	30742											
PLP1	5354	broad.mit.edu	37	chrX	103041709	103041709	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgggggaaaattgggcGcgagtctgtggcctcgtccc	19	9	1	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103041709	A	A	103041709	1	1	13	0	1	0	0	0	0	0	0	0	12199	1102	38	4		4	PLP1	23	103041709	Intron	SNP	G	TCGA-05-4403-01A-01D-1265-08	56009152	103041709	52228851	365	30743											
RGAG1	57529	broad.mit.edu	37	chrX	109693957	109693957	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatgacagagaccagagcaGacgtacagattctgcattct	9	10	2	5			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109693957	C	C	109693957	3	2	13	1	0	0	0	0	1	0	0	0	13382	942	33	4	114	4	RGAG1	23	109693957	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	6652248	109693957	45576603	366	30744											
RGAG1	57529	broad.mit.edu	37	chrX	109696066	109696066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccatgaagtccatgaccGctggagggatgcagatgaat	13	10	0	4			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109696066	T	T	109696066	3	4	13	1	0	0	0	0	1	0	0	0	13382	1087	38	3	2223	3	RGAG1	23	109696066	Missense_Mutation	SNP	G	TCGA-05-4403-01A-01D-1265-08	2109	109696066	45574494	367	30745											
SASH3	54440	broad.mit.edu	37	chrX	128922248	128922248	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaactatttataaatttatAgggctaaggacatggctggg	10	5	0	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128922248	G	G	128922248	1	3	13	0	1	0	0	0	0	0	0	0	13961	435	15	5		5	SASH3	23	128922248	Intron	SNP	A	TCGA-05-4403-01A-01D-1265-08	19226182	128922248	26348312	368	30746											
MCF2	4168	broad.mit.edu	37	chrX	138687138	138687138	+	Nonsense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattatccatctccgctctAtaaccctacccaaaataaat	3	13	2	0			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138687138	C	C	138687138	4	2	13	1	0	0	0	0	0	1	0	0	9471	456	16	5	1290	5	MCF2	23	138687138	Nonsense_Mutation	SNP	A	TCGA-05-4403-01A-01D-1265-08	9764890	138687138	16583422	369	30747											
UTY	7404	broad.mit.edu	37	chrY	15467250	15467250	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgttatgaattccagtagttCgtacctgagcaacttctttg	8	9	1	2			TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15467250	G	G	15467250	3	3	13	1	0	0	0	0	1	0	0	0	17234	884	31	4	2959	4	UTY	24	15467250	Missense_Mutation	SNP	C	TCGA-05-4403-01A-01D-1265-08		15467250	43906316	370	30748											
PLEKHN1	84069	broad.mit.edu	37	chr1	909612	909612	+	Intron	DEL	G	-	-													gagggagagcagggggacatGgggggctgcacagtgacagg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	909612	-	-	909612	6	5	14	0	1	1	0	1	0	0	0	0	12178	1363	47	0		0	PLEKHN1	1	909612	Intron	DEL	G	TCGA-05-4405-01A-21D-1855-08		909612	248341009	1	30749											
TNFRSF4	7293	broad.mit.edu	37	chr1	1148430	1148430	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccggcagcggcagactgtGtcctgtgtggccgtgcacag	16	13	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1148430	A	A	1148430	2	1	14	1	0	0	0	0	0	0	0	1	16420	1368	48	4		4	TNFRSF4	1	1148430	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	238818	1148430	248102191	2	30750											
FAM132A	388581	broad.mit.edu	37	chr1	1178014	1178014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtccacaaacacagaagCgtactgtccagcctgtaaga	8	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1178014	A	A	1178014	3	1	14	1	0	0	0	0	1	0	0	0	5488	768	27	3	89	3	FAM132A	1	1178014	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	29584	1178014	248072607	3	30751											
ACAP3	116983	broad.mit.edu	37	chr1	1237394	1237394	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagctctggagctgctgCcgcacggacctctgggcctg	13	14	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1237394	A	A	1237394	2	1	14	1	0	0	0	0	0	0	0	1	120	726	26	3		3	ACAP3	1	1237394	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	59380	1237394	248013227	4	30752											
PLCH2	9651	broad.mit.edu	37	chr1	2428371	2428371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccagcagcagctctccCgcatctacccctcctcctac	4	21	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2428371	A	A	2428371	3	1	14	1	0	0	0	0	1	0	0	0	12133	652	23	1	2096	1	PLCH2	1	2428371	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1190977	2428371	246822250	5	30753											
ACTRT2	140625	broad.mit.edu	37	chr1	2938683	2938683	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcggaccaggcggtgctgGctctctacgcctctgcctgt	13	14	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2938683	A	A	2938683	3	1	14	1	0	0	0	0	1	0	0	0	219	1203	42	4	435	4	ACTRT2	1	2938683	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	510312	2938683	246311938	6	30754											
AJAP1	55966	broad.mit.edu	37	chr1	4772770	4772770	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggcctcaggtacagccatCtctcttctggtttgggtttg	12	10	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4772770	G	G	4772770	1	3	14	0	1	0	0	0	0	0	0	0	438	928	32	4		4	AJAP1	1	4772770	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1834087	4772770	244477851	7	30755											
TAS1R1	80835	broad.mit.edu	37	chr1	6631143	6631143	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagagtgctctccctgccAgggcaacaccacatagagct	10	14	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6631143	T	T	6631143	2	4	14	1	0	0	0	0	0	0	0	1	15681	175	7	5		5	TAS1R1	1	6631143	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	1858373	6631143	242619478	8	30756											
DNAJC11	55735	broad.mit.edu	37	chr1	6727753	6727753	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagtgtcctcatgaaacGtggcccctggcttaccttgg	11	11	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6727753	A	A	6727753	1	1	14	0	1	0	0	0	0	0	0	0	4670	1160	40	4		4	DNAJC11	1	6727753	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	96610	6727753	242522868	9	30757											
SPSB1	80176	broad.mit.edu	37	chr1	9416498	9416499	+	Frame_Shift_Ins	INS	-	G	G													ttcctggtagccctggacatINSggacgacgggactctgagct							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9416499	G	G	9416498	7	5	14	1	0	1	1	0	0	0	0	0	15230	1464	51	0	550	0	SPSB1	1	9416498	Frame_Shift_Ins	INS	-	TCGA-05-4405-01A-21D-1855-08	2688745	9416498	239834123	10	30758											
KIF1B	23095	broad.mit.edu	37	chr1	10363641	10363641	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggataccgtcggtgttgggGatgagaagatcgaagacgtc	17	6	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10363641	A	A	10363641	1	1	14	0	1	0	0	0	0	0	0	0	8354	1174	41	4		4	KIF1B	1	10363641	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	947143	10363641	238886980	11	30759											
TNFRSF8	943	broad.mit.edu	37	chr1	12198276	12198276	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagcagcacccattccCgtcccacagcagctgaggag	10	17	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12198276	G	G	12198276	1	3	14	0	1	0	0	0	0	0	0	0	16422	667	23	4		4	TNFRSF8	1	12198276	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1834635	12198276	237052345	12	30760											
SPEN	23013	broad.mit.edu	37	chr1	16265829	16265829	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcttcccgccctgtgagttCtctgagagtcacctgtcccg	9	15	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16265829	T	T	16265829	2	4	14	1	0	0	0	0	0	0	0	1	15156	912	32	4		4	SPEN	1	16265829	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	4067553	16265829	232984792	13	30761											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17949410	17949410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgggaaggcccattcatGgctggccgagttctgcatga	13	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17949410	T	T	17949410	1	4	14	0	1	0	0	0	0	0	0	0	897	1363	47	2		2	ARHGEF10L	1	17949410	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1683581	17949410	231301211	14	30762											
TAS1R2	80834	broad.mit.edu	37	chr1	19186147	19186147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagatggtctttgccctgGgccccatggctgggaagtga	16	9	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19186147	T	T	19186147	3	4	14	1	0	0	0	0	1	0	0	0	15682	1232	43	2	2535	2	TAS1R2	1	19186147	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1236737	19186147	230064474	15	30763											
KIF17	57576	broad.mit.edu	37	chr1	20992910	20992910	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctggtatcctggggcagTgggggccgccccgagcttcc	15	15	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20992910	G	G	20992910	1	3	14	0	1	0	0	0	0	0	0	0	8349	1711	59	5		5	KIF17	1	20992910	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	1806763	20992910	228257711	16	30764											
RHD	6007	broad.mit.edu	37	chr1	25627475	25627475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgatgcacatctacgtgttCgcagcctattttgggctgtc	10	10	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25627475	A	A	25627475	3	1	14	1	0	0	0	0	1	0	0	0	13436	883	31	3	539	3	RHD	1	25627475	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	4634565	25627475	223623146	17	30765											
GPN2	54707	broad.mit.edu	37	chr1	27210847	27210847	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaaaactgcttgcaatctCtaaatacaccttcctccatc	3	13	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27210847	A	A	27210847	1	1	14	0	1	0	0	0	0	0	0	0	6683	928	32	3		3	GPN2	1	27210847	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1583372	27210847	222039774	18	30766											
GPATCH3	63906	broad.mit.edu	37	chr1	27227000	27227000	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgagcaacgttccagcccCtgcgttgcgagattgtgaaa	12	12	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27227000	T	T	27227000	1	4	14	0	1	0	0	0	0	0	0	0	6657	696	24	4		4	GPATCH3	1	27227000	5'Flank	SNP	C	TCGA-05-4405-01A-21D-1855-08	16153	27227000	222023621	19	30767											
CSMD2	114784	broad.mit.edu	37	chr1	34258067	34258067	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatcctgaccaccatcacCgaccgtcagggtgtcatagc	8	17	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34258067	T	T	34258067	3	4	14	1	0	0	0	0	1	0	0	0	3979	652	23	4	9312	4	CSMD2	1	34258067	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	7031067	34258067	214992554	20	30768											
CLSPN	63967	broad.mit.edu	37	chr1	36219571	36219571	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccagtgtgtcagtttgCcatgctcaaaactctttcct	6	13	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36219571	T	T	36219571	1	4	14	0	1	0	0	0	0	0	0	0	3592	754	26	4		4	CLSPN	1	36219571	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1961504	36219571	213031050	21	30769											
TIE1	7075	broad.mit.edu	37	chr1	43783350	43783351	+	Intron	INS	-	C	C													cctgtaagaaccgaggtgagINScccccagctcatcacctacc							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43783351	C	C	43783350	6	5	14	0	1	1	1	0	0	0	0	0	16016	986	34	0		0	TIE1	1	43783350	Intron	INS	-	TCGA-05-4405-01A-21D-1855-08	7563779	43783350	205467271	22	30770											
POMGNT1	55624	broad.mit.edu	37	chr1	46658031	46658031	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctccttgtacaaggacctCctgagcacccagcccagccc	7	19	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46658031	T	T	46658031	2	4	14	1	0	0	0	0	0	0	0	1	12338	854	30	4		4	POMGNT1	1	46658031	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2874681	46658031	202592590	23	30771											
LRRC42	115353	broad.mit.edu	37	chr1	54417792	54417792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggagtagcctgcagaaGccaaggcctttcagactgtt	12	10	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54417792	T	T	54417792	3	4	14	1	0	0	0	0	1	0	0	0	9087	962	34	3	122	3	LRRC42	1	54417792	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	7759761	54417792	194832829	24	30772											
FAM151A	338094	broad.mit.edu	37	chr1	55080475	55080475	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcctctgtcagctgcCgcaggaggtccagggagggg	16	12	2	0	rs150113940	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55080475	T	T	55080475	3	4	14	1	0	0	0	0	1	0	0	0	5504	652	23	4	1304	4	FAM151A	1	55080475	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	662683	55080475	194170146	25	30773											
C1orf175	374977	broad.mit.edu	37	chr1	55175477	55175477	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaaaaatgtgaataatttGaattgccaggaggaaagtga	11	3	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55175477	T	T	55175477	1	4	14	0	1	0	0	0	0	0	0	0	2036	1305	45	3		3	C1orf175	1	55175477	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	95002	55175477	194075144	26	30774											
C1orf168	199920	broad.mit.edu	37	chr1	57257990	57257990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccttccagatggatggCcttacttccatagttggcaa	9	11	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57257990	A	A	57257990	3	1	14	1	0	0	0	0	1	0	0	0	2032	739	26	3	1766	3	C1orf168	1	57257990	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2082513	57257990	191992631	27	30775											
LEPR	3953	broad.mit.edu	37	chr1	66066917	66066917	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacactagataactgtacAcaaacaggtaatttcagcat	8	8	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66066917	C	C	66066917	1	2	14	0	1	0	0	0	0	0	0	0	8800	174	6	5		5	LEPR	1	66066917	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	8808927	66066917	183183704	28	30776											
PDE4B	5142	broad.mit.edu	37	chr1	66713283	66713283	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctacagatcagacagcgActatgacttgtcaccaaagg	8	11	3	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66713283	T	T	66713283	3	4	14	1	0	0	0	0	1	0	0	0	11734	275	10	5	672	5	PDE4B	1	66713283	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	646366	66713283	182537338	29	30777											
AK5	26289	broad.mit.edu	37	chr1	77783987	77783987	+	Intron	SNP	C	A	A													acacttgtaaacaactagatCttgtgagaacttactcatta							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77783987	A	A	77783987	1	1	14	0	1	0	0	0	0	0	0	0	443	928	32	3		3	AK5	1	77783987	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	11070704	77783987	171466634	30	30778	180	2									
AK5	26289	broad.mit.edu	37	chr1	77783989	77783989	+	Intron	SNP	T	A	A													acttgtaaacaactagatctTgtgagaacttactcattata							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77783989	A	A	77783989	1	1	14	0	1	0	0	0	0	0	0	0	443	1827	63	5		5	AK5	1	77783989	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	2	77783989	171466632	31	30779	180	2									
ZZZ3	26009	broad.mit.edu	37	chr1	78098198	78098198	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagcaggcagttactattTtgtggtcctccaacttgacc	9	11	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78098198	C	C	78098198	3	2	14	1	0	0	0	0	1	0	0	0	18385	1841	64	5	1913	5	ZZZ3	1	78098198	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	314209	78098198	171152423	32	30780											
LPHN2	23266	broad.mit.edu	37	chr1	82418779	82418779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgctttatcatcttgctGcatgatccaatgtatttcag	6	11	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82418779	T	T	82418779	1	4	14	0	1	0	0	0	0	0	0	0	9003	1334	46	3		3	LPHN2	1	82418779	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4320581	82418779	166831842	33	30781											
GBP1	2633	broad.mit.edu	37	chr1	89525150	89525150	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtcaggagcaagtttcatCatcgcagcacttttcagagt	10	9	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89525150	T	T	89525150	1	4	14	0	1	0	0	0	0	0	0	0	6335	841	29	4		4	GBP1	1	89525150	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	7106371	89525150	159725471	34	30782											
GBP6	163351	broad.mit.edu	37	chr1	89846073	89846073	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctagccaatattgagaagGtgtcagaaaagcaactggat	10	6	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89846073	A	A	89846073	3	1	14	1	0	0	0	0	1	0	0	0	6340	1261	44	4	772	4	GBP6	1	89846073	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	320923	89846073	159404548	35	30783											
C1orf146	388649	broad.mit.edu	37	chr1	92697130	92697130	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acattttaaaaggttcttagCttaattatccacaattaatt	3	6	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92697130	G	G	92697130	1	3	14	0	1	0	0	0	0	0	0	0	2023	812	28	4		4	C1orf146	1	92697130	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2851057	92697130	156553491	36	30784											
EVI5	7813	broad.mit.edu	37	chr1	93131509	93131509	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacttactttttctaatgtcTcgatgcgctgttttaaaagt	6	7	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93131509	A	A	93131509	3	1	14	1	0	0	0	0	1	0	0	0	5331	1551	54	5	1133	5	EVI5	1	93131509	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	434379	93131509	156119112	37	30785											
DPYD	1806	broad.mit.edu	37	chr1	97981448	97981448	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagatcaataggagtgTaaaagaggggtagttcaggc	13	7	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97981448	C	C	97981448	3	2	14	1	0	0	0	0	1	0	0	0	4785	1638	57	5	1547	5	DPYD	1	97981448	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	4849939	97981448	151269173	38	30786											
DBT	1629	broad.mit.edu	37	chr1	100715503	100715503	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaacgagcctcccacccAacagccaaccaaggagtagg	9	14	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100715503	T	T	100715503	1	4	14	0	1	0	0	0	0	0	0	0	4291	145	5	5		5	DBT	1	100715503	5'Flank	SNP	A	TCGA-05-4405-01A-21D-1855-08	2734055	100715503	148535118	39	30787											
CELSR2	1952	broad.mit.edu	37	chr1	109810125	109810125	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccagtctcaggggcttcCtgtgtgtctccctgaggccg	13	14	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109810125	T	T	109810125	1	4	14	0	1	0	0	0	0	0	0	0	3252	696	24	4		4	CELSR2	1	109810125	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	9094622	109810125	139440496	40	30788											
AP4B1	10717	broad.mit.edu	37	chr1	114437980	114437980	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgccaaggcaacacttgctGatgagcaactttaaggctaa	9	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114437980	C	C	114437980	3	2	14	1	0	0	0	0	1	0	0	0	753	1299	45	4	296	4	AP4B1	1	114437980	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	4627855	114437980	134812641	41	30789											
SYCP1	6847	broad.mit.edu	37	chr1	115487071	115487071	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatcagaagaaaatcttttgGaagaggtgggaaaaacttaa	10	3	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115487071	T	T	115487071	4	4	14	1	0	0	0	0	0	1	0	0	15550	1175	41	3	2128	3	SYCP1	1	115487071	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1049091	115487071	133763550	42	30790											
ACP6	51205	broad.mit.edu	37	chr1	147124513	147124513	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggtcaagaagctatgtcTctaaagctcttccaaagcta	7	10	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147124513	C	C	147124513	1	2	14	0	1	0	0	0	0	0	0	0	165	1566	54	5		5	ACP6	1	147124513	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	31637442	147124513	102126108	43	30791											
LOC200030	200030	broad.mit.edu	37	chr1	148021473	148021473	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcacaatttgtagctggGtgaatggaagaaatagttct	11	5	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148021473	A	A	148021473	1	1	14	0	1	0	0	0	0	0	0	0	8950	1276	44	4		4	LOC200030	1	148021473	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	896960	148021473	101229148	44	30792											
LOC200030	200030	broad.mit.edu	37	chr1	148342291	148342291	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatggtacagacatgacactTggcacacatagagaaacacg	9	9	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148342291	C	C	148342291	1	2	14	0	1	0	0	0	0	0	0	0	8950	1827	63	5		5	LOC200030	1	148342291	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	320818	148342291	100908330	45	30793											
PLEKHO1	51177	broad.mit.edu	37	chr1	150130988	150130988	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctgatgacaggttccCcactcattccccccttcctc	4	21	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150130988	G	G	150130988	1	3	14	0	1	0	0	0	0	0	0	0	12179	638	22	4		4	PLEKHO1	1	150130988	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1788697	150130988	99119633	46	30794											
VPS72	6944	broad.mit.edu	37	chr1	151150671	151150671	+	Intron	DEL	C	-	-													tgatcagaatgtccctttttCccatatcccagtactgtccc							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151150671	-	-	151150671	6	5	14	0	1	1	0	1	0	0	0	0	17344	870	30	0		0	VPS72	1	151150671	Intron	DEL	C	TCGA-05-4405-01A-21D-1855-08	1019683	151150671	98099950	47	30795											
FLG2	388698	broad.mit.edu	37	chr1	152329152	152329152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactgacttgagcctgttctCcattgtcctccacagttctg	8	13	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152329152	A	A	152329152	3	1	14	1	0	0	0	0	1	0	0	0	5980	856	30	3	6069	3	FLG2	1	152329152	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1178481	152329152	96921469	48	30796											
S100A3	6274	broad.mit.edu	37	chr1	153520343	153520343	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgcaagggaagggttggGagaggtaagggagtaggatg	21	2	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153520343	T	T	153520343	1	4	14	0	1	0	0	0	0	0	0	0	13890	1189	41	3		3	S100A3	1	153520343	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1191191	153520343	95730278	49	30797											
NUP210L	91181	broad.mit.edu	37	chr1	154030966	154030966	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacacacagtagctgagcaGagactatattaaggaatgct	9	8	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154030966	C	C	154030966	1	2	14	0	1	0	0	0	0	0	0	0	10856	957	33	4		4	NUP210L	1	154030966	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	510623	154030966	95219655	50	30798											
SCAMP3	10067	broad.mit.edu	37	chr1	155226464	155226464	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccttcgacacagccctcaCccgtttcagcatgacaattc	5	17	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155226464	G	G	155226464	5	3	14	1	0	0	0	0	0	0	1	0	13984	521	18	4	153	4	SCAMP3	1	155226464	Splice_Site	SNP	C	TCGA-05-4405-01A-21D-1855-08	1195498	155226464	94024157	51	30799											
ARHGEF2	9181	broad.mit.edu	37	chr1	155922403	155922403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgagcctggactcttccCtgggagctccctcaccctca	9	17	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155922403	T	T	155922403	1	4	14	0	1	0	0	0	0	0	0	0	905	696	24	4		4	ARHGEF2	1	155922403	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	695939	155922403	93328218	52	30800											
UBQLN4	56893	broad.mit.edu	37	chr1	156020953	156020953	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccagcccccggagagggCcccccaccactgctcctccg	9	23	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156020953	A	A	156020953	2	1	14	1	0	0	0	0	0	0	0	1	17025	726	26	3		3	UBQLN4	1	156020953	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	98550	156020953	93229668	53	30801											
BCAN	63827	broad.mit.edu	37	chr1	156617416	156617416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggagcagctctatgccGcctaccttgggggctatgag	13	14	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156617416	A	A	156617416	3	1	14	1	0	0	0	0	1	0	0	0	1350	1087	38	4	593	4	BCAN	1	156617416	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	596463	156617416	92633205	54	30802											
FCRL2	79368	broad.mit.edu	37	chr1	157738381	157738381	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctctgtaccaggagaatgTgacatttcctgtacccccag	8	13	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157738381	A	A	157738381	3	1	14	1	0	0	0	0	1	0	0	0	5852	1696	59	5	852	5	FCRL2	1	157738381	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1120965	157738381	91512240	55	30803											
CD1B	910	broad.mit.edu	37	chr1	158300661	158300661	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagactcggaatatctcctCtaactcagcaacctccttat	5	13	3	1	rs149817745	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158300661	G	G	158300661	3	3	14	1	0	0	0	0	1	0	0	0	3005	922	32	4	768	4	CD1B	1	158300661	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	562280	158300661	90949960	56	30804											
SPTA1	6708	broad.mit.edu	37	chr1	158647525	158647525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaagtcccttgtgactGtgaaacagtccttcagaggc	9	12	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158647525	T	T	158647525	3	4	14	1	0	0	0	0	1	0	0	0	15234	1368	48	3	6531	3	SPTA1	1	158647525	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	346864	158647525	90603096	57	30805											
OR6N1	128372	broad.mit.edu	37	chr1	158735770	158735770	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacgtggagatggccttccTcttgccggcagctgagggaa	14	11	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158735770	G	G	158735770	2	3	14	1	0	0	0	0	0	0	0	1	11300	1550	54	5		5	OR6N1	1	158735770	Silent	SNP	T	TCGA-05-4405-01A-21D-1855-08	88245	158735770	90514851	58	30806											
IFI16	3428	broad.mit.edu	37	chr1	159002405	159002405	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatatccttcagaggccaGcacaaccttccctgagagcc	7	16	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159002405	A	A	159002405	3	1	14	1	0	0	0	0	1	0	0	0	7581	971	34	4	1275	4	IFI16	1	159002405	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	266635	159002405	90248216	59	30807											
CADM3	57863	broad.mit.edu	37	chr1	159163316	159163316	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcaagcctgcagcccgGctcacctggagaaagggtga	16	11	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159163316	T	T	159163316	2	4	14	1	0	0	0	0	0	0	0	1	2594	1190	42	3		3	CADM3	1	159163316	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	160911	159163316	90087305	60	30808											
SLAMF6	114836	broad.mit.edu	37	chr1	160459876	160459877	+	Intron	DNP	AC	TT	TT													agcatgtggtctgagtaatgAcattctgactccttcctctg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	160459877	TT	TT	160459876	1	4	14	0	1	0	0	0	0	0	0	0	14481	290	10	5		5	SLAMF6	1	160459876	Intron	DNP	AC	TCGA-05-4405-01A-21D-1855-08	1296560	160459876	88790745	61	30809											
PPOX	5498	broad.mit.edu	37	chr1	161138874	161138875	+	Missense_Mutation	DNP	GC	AT	AT													cgtggaggtctagagatgttGcctcaggcccttgaaaccca							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	161138875	AT	AT	161138874	3	1	14	1	0	0	0	0	1	0	0	0	12449	1310	46	4	730	4	PPOX	1	161138874	Missense_Mutation	DNP	GC	TCGA-05-4405-01A-21D-1855-08	678998	161138874	88111747	62	30810											
APOA2	336	broad.mit.edu	37	chr1	161192883	161192883	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacActcttttcagctgggtccac	4	17	2	0	rs57498167		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161192883	T	T	161192883	1	4	14	0	1	0	0	0	0	0	0	0	784	174	6	5		5	APOA2	1	161192883	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	54009	161192883	88057738	63	30811											
FCGR2B	2213	broad.mit.edu	37	chr1	161647046	161647046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgggcgttggttttgcaGcctcagcatcagcacaggca	13	10	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161647046	T	T	161647046	1	4	14	0	1	0	0	0	0	0	0	0	5839	986	34	3		3	FCGR2B	1	161647046	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	454163	161647046	87603575	64	30812											
DUSP27	92235	broad.mit.edu	37	chr1	167082839	167082839	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggctttgccttgatcactCgttgttccccacttgttgct	8	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167082839	A	A	167082839	1	1	14	0	1	0	0	0	0	0	0	0	4864	899	31	3		3	DUSP27	1	167082839	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	5435793	167082839	82167782	65	30813											
C1orf114	57821	broad.mit.edu	37	chr1	169393969	169393969	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattttgtgatgtttagatGagataataatgtgaaaacct	8	2	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169393969	C	C	169393969	1	2	14	0	1	0	0	0	0	0	0	0	2007	1305	45	4		4	C1orf114	1	169393969	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2311130	169393969	79856652	66	30814											
SELE	6401	broad.mit.edu	37	chr1	169701111	169701111	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatacaaagcatgatgaggAggactattactgtgcttata	9	5	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169701111	T	T	169701111	1	4	14	0	1	0	0	0	0	0	0	0	14126	319	11	5		5	SELE	1	169701111	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	307142	169701111	79549510	67	30815											
C1orf129	80133	broad.mit.edu	37	chr1	170940731	170940731	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcacagatgaggaaattGagagtcagtaacggggccag	13	6	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170940731	T	T	170940731	1	4	14	0	1	0	0	0	0	0	0	0	2016	1305	45	3		3	C1orf129	1	170940731	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1239620	170940731	78309890	68	30816											
TNR	7143	broad.mit.edu	37	chr1	175334328	175334328	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagttaagaatgagtctgTctgctgggggagatggatca	15	4	3	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334328	A	A	175334328	3	1	14	1	0	0	0	0	1	0	0	0	16461	1667	58	5	1719	5	TNR	1	175334328	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	4393597	175334328	73916293	69	30817											
CEP350	9857	broad.mit.edu	37	chr1	180047644	180047644	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacctctgtactctcatctAaacagtgaaagctccattcc	5	13	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180047644	G	G	180047644	2	3	14	1	0	0	0	0	0	0	0	1	3284	349	13	5		5	CEP350	1	180047644	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	4713316	180047644	69202977	70	30818											
CACNA1E	777	broad.mit.edu	37	chr1	181701955	181701955	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgacctttgaggaccgGgccaggcacaggcagagcca	16	11	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181701955	C	C	181701955	2	2	14	1	0	0	0	0	0	0	0	1	2568	1219	43	4		4	CACNA1E	1	181701955	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	1654311	181701955	67548666	71	30819											
CACNA1E	777	broad.mit.edu	37	chr1	181745260	181745260	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaacctgtttgtggccgtCatcatggacaactttgagta	9	10	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181745260	A	A	181745260	2	1	14	1	0	0	0	0	0	0	0	1	2568	813	29	3		3	CACNA1E	1	181745260	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	43305	181745260	67505361	72	30820											
CACNA1E	777	broad.mit.edu	37	chr1	181745334	181745334	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacttggacgagtttgtccGcgtctgggcagaatatgacc	12	11	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181745334	A	A	181745334	3	1	14	1	0	0	0	0	1	0	0	0	2568	1087	38	4	5387	4	CACNA1E	1	181745334	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	74	181745334	67505287	73	30821											
FAM129A	116496	broad.mit.edu	37	chr1	184793597	184793597	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtctgcttgacctgcttctCcacagccagaacccaagccc	7	17	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184793597	G	G	184793597	1	3	14	0	1	0	0	0	0	0	0	0	5482	870	30	4		4	FAM129A	1	184793597	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3048263	184793597	64457024	74	30822											
C1orf26	54823	broad.mit.edu	37	chr1	185159774	185159774	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttgttattctgtgcaCgtgagtttcatagtcatttg	8	6	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185159774	T	T	185159774	3	4	14	1	0	0	0	0	1	0	0	0	2057	550	19	4	1557	4	C1orf26	1	185159774	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	366177	185159774	64090847	75	30823											
HMCN1	83872	broad.mit.edu	37	chr1	186077558	186077558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggatacctatgataataCagattgcttttgttgtattt	7	4	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186077558	A	A	186077558	1	1	14	0	1	0	0	0	0	0	0	0	7287	493	17	3		3	HMCN1	1	186077558	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	917784	186077558	63173063	76	30824											
TPR	7175	broad.mit.edu	37	chr1	186308929	186308929	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aataacaaaaatgcatacttGatttttttaggttttatgaa	5	3	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186308929	A	A	186308929	1	1	14	0	1	0	0	0	0	0	0	0	16540	1305	45	4		4	TPR	1	186308929	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	231371	186308929	62941692	77	30825											
KCNT2	343450	broad.mit.edu	37	chr1	196394951	196394951	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaagtcactcaaaactgtAagctgcaagatgaaaggcag	9	7	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196394951	T	T	196394951	1	4	14	0	1	0	0	0	0	0	0	0	8162	377	13	5		5	KCNT2	1	196394951	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	10086022	196394951	52855670	78	30826											
F13B	2165	broad.mit.edu	37	chr1	197032176	197032176	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttccacatgaggaaaacCacagggtttctctgaaatga	8	8	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197032176	G	G	197032176	3	3	14	1	0	0	0	0	1	0	0	0	5384	594	21	4	1953	4	F13B	1	197032176	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	637225	197032176	52218445	79	30827											
NAV1	89796	broad.mit.edu	37	chr1	201781872	201781872	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagggatgctcccttctctTcctggagtcttcggcatgta	12	11	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201781872	A	A	201781872	1	1	14	0	1	0	0	0	0	0	0	0	10277	1798	62	5		5	NAV1	1	201781872	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	4749696	201781872	47468749	80	30828											
CNTN2	6900	broad.mit.edu	37	chr1	205039560	205039560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattggtccccagagcccaGggtggcccctaccaaggtgt	13	13	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205039560	T	T	205039560	3	4	14	1	0	0	0	0	1	0	0	0	3673	1000	35	2	2508	2	CNTN2	1	205039560	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	3257688	205039560	44211061	81	30829											
DSTYK	25778	broad.mit.edu	37	chr1	205133027	205133027	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagttcctggatctgtcggaTgcagcatttgatctctctgg	12	9	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205133027	A	A	205133027	3	1	14	1	0	0	0	0	1	0	0	0	4825	1464	51	5	1448	5	DSTYK	1	205133027	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	93467	205133027	44117594	82	30830											
IL19	29949	broad.mit.edu	37	chr1	206972208	206972208	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgattttctccatagagCggtgcttgcacacactgaca	8	11	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206972208	A	A	206972208	1	1	14	0	1	0	0	0	0	0	0	0	7719	783	27	3		3	IL19	1	206972208	5'Flank	SNP	C	TCGA-05-4405-01A-21D-1855-08	1839181	206972208	42278413	83	30831											
CR1	1378	broad.mit.edu	37	chr1	207679324	207679324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttgagtttcccattgGgacatatctgaactatgaat	8	6	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207679324	T	T	207679324	3	4	14	1	0	0	0	0	1	0	0	0	3872	1232	43	2	203	2	CR1	1	207679324	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	707116	207679324	41571297	84	30832											
CR1	1378	broad.mit.edu	37	chr1	207751547	207751547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttaccaagctgctccagGggtgagtctgactgatgcct	13	10	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207751547	T	T	207751547	3	4	14	1	0	0	0	0	1	0	0	0	3872	1246	43	2	5049	2	CR1	1	207751547	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	72223	207751547	41499074	85	30833											
CR1L	1379	broad.mit.edu	37	chr1	207881717	207881717	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaaatggtatccttctgaTatttgaagaatccagtcata	8	6	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207881717	A	A	207881717	1	1	14	0	1	0	0	0	0	0	0	0	3873	1421	49	5		5	CR1L	1	207881717	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	130170	207881717	41368904	86	30834											
HHAT	55733	broad.mit.edu	37	chr1	210560772	210560772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgttctgactcagacgtGtactgaaatccctctgataa	8	9	3	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210560772	T	T	210560772	1	4	14	0	1	0	0	0	0	0	0	0	7156	1392	48	3		3	HHAT	1	210560772	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2679055	210560772	38689849	87	30835											
PPP2R5A	5525	broad.mit.edu	37	chr1	212502571	212502571	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactctgtttcagacttgaaGagcaaagaaattaaaagagc	9	6	2	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212502571	T	T	212502571	3	4	14	1	0	0	0	0	1	0	0	0	12493	933	33	3	282	3	PPP2R5A	1	212502571	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1941799	212502571	36748050	88	30836											
CENPF	1063	broad.mit.edu	37	chr1	214820636	214820636	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatccaagtgctacaatccAaaaatgcctctttgcaggac	7	11	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214820636	G	G	214820636	3	3	14	1	0	0	0	0	1	0	0	0	3261	131	5	5	7769	5	CENPF	1	214820636	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	2318065	214820636	34429985	89	30837											
USH2A	7399	broad.mit.edu	37	chr1	215844674	215844674	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattagtgattttcagcaaAatagattttcatgggaagaa	8	3	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215844674	G	G	215844674	1	3	14	0	1	0	0	0	0	0	0	0	17162	29	1	5		5	USH2A	1	215844674	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1024038	215844674	33405947	90	30838											
ESRRG	2104	broad.mit.edu	37	chr1	216850615	216850615	+	Frame_Shift_Del	DEL	C	-	-													tcctgacaggcccactacctCccaggataggagcagaaggg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216850615	-	-	216850615	7	5	14	1	0	1	0	1	0	0	0	0	5304	855	30	0	1125	0	ESRRG	1	216850615	Frame_Shift_Del	DEL	C	TCGA-05-4405-01A-21D-1855-08	1005941	216850615	32400006	91	30839											
SPATA17	128153	broad.mit.edu	37	chr1	218023995	218023995	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgacctgttagcagataCgaggatgctgcgaatcgcca	11	9	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218023995	T	T	218023995	1	4	14	0	1	0	0	0	0	0	0	0	15118	551	19	4		4	SPATA17	1	218023995	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1173380	218023995	31226626	92	30840											
EPRS	2058	broad.mit.edu	37	chr1	220152742	220152742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttataaaatgagtgataaaCaggaatattttccttacctg	6	5	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220152742	A	A	220152742	1	1	14	0	1	0	0	0	0	0	0	0	5233	493	17	3		3	EPRS	1	220152742	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2128747	220152742	29097879	93	30841											
CAPN2	824	broad.mit.edu	37	chr1	223943128	223943128	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagaccagggccaccccccAcccccatgcattcctgctca	7	20	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223943128	T	T	223943128	1	4	14	0	1	0	0	0	0	0	0	0	2653	174	6	5		5	CAPN2	1	223943128	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	3790386	223943128	25307493	94	30842											
LBR	3930	broad.mit.edu	37	chr1	225594242	225594242	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttattactcatgataaatGgcttcaaactgagctaatgc	6	7	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225594242	A	A	225594242	1	1	14	0	1	0	0	0	0	0	0	0	8724	1363	47	4		4	LBR	1	225594242	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1651114	225594242	23656379	95	30843											
URB2	9816	broad.mit.edu	37	chr1	229779310	229779310	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgttcaggtcactcaggAtattgagcctcatttgggag	11	9	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229779310	T	T	229779310	3	4	14	1	0	0	0	0	1	0	0	0	17151	333	12	5	3679	5	URB2	1	229779310	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	4185068	229779310	19471311	96	30844											
COG2	22796	broad.mit.edu	37	chr1	230824387	230824387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggaaggaaggaaggaaGcggcggattcccagggtagc	18	6	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230824387	T	T	230824387	1	4	14	0	1	0	0	0	0	0	0	0	3690	986	34	3		3	COG2	1	230824387	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1045077	230824387	18426234	97	30845											
SIPA1L2	57568	broad.mit.edu	37	chr1	232581492	232581492	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccctcgctgtcgagttTatattccaccatagggatcc	10	12	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232581492	C	C	232581492	3	2	14	1	0	0	0	0	1	0	0	0	14443	1763	61	5	2084	5	SIPA1L2	1	232581492	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1757105	232581492	16669129	98	30846											
B3GALNT2	148789	broad.mit.edu	37	chr1	235628937	235628937	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagtgtacttttcaagtttCaactagcaaacttaccctga	5	10	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235628937	T	T	235628937	1	4	14	0	1	0	0	0	0	0	0	0	1251	841	29	4		4	B3GALNT2	1	235628937	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3047445	235628937	13621684	99	30847											
LYST	1130	broad.mit.edu	37	chr1	235922575	235922575	+	Frame_Shift_Del	DEL	C	-	-													ccactggaaatcccagcactCcctttgggacatcactgaca							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	235922575	-	-	235922575	7	5	14	1	0	1	0	1	0	0	0	0	9216	855	30	0	4951	0	LYST	1	235922575	Frame_Shift_Del	DEL	C	TCGA-05-4405-01A-21D-1855-08	293638	235922575	13328046	100	30848											
RYR2	6262	broad.mit.edu	37	chr1	237608683	237608683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgttgggagtaatggccttAtttttgctttcttacaggct	10	7	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237608683	G	G	237608683	1	3	14	0	1	0	0	0	0	0	0	0	13880	464	16	5		5	RYR2	1	237608683	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1686108	237608683	11641938	101	30849											
RYR2	6262	broad.mit.edu	37	chr1	237656311	237656311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttgcagtccgttctaacCagcatctcatctgtgacaat	9	11	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237656311	A	A	237656311	3	1	14	1	0	0	0	0	1	0	0	0	13880	595	21	2	1959	2	RYR2	1	237656311	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	47628	237656311	11594310	102	30850											
RYR2	6262	broad.mit.edu	37	chr1	237951363	237951363	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggcagcttcacacacaCagatacggagaaccagaagt	10	10	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237951363	A	A	237951363	3	1	14	1	0	0	0	0	1	0	0	0	13880	477	17	3	13770	3	RYR2	1	237951363	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	295052	237951363	11299258	103	30851											
ZP4	57829	broad.mit.edu	37	chr1	238051640	238051640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcagctggtttcagagGtgtgctcacttactcaccag	9	12	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238051640	T	T	238051640	1	4	14	0	1	0	0	0	0	0	0	0	18347	1276	44	3		3	ZP4	1	238051640	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	100277	238051640	11198981	104	30852											
ZP4	57829	broad.mit.edu	37	chr1	238051837	238051837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaaaagagtaagtcagGttagataatggaaaagttag	11	1	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238051837	T	T	238051837	1	4	14	0	1	0	0	0	0	0	0	0	18347	1276	44	3		3	ZP4	1	238051837	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	197	238051837	11198784	105	30853											
PLD5	200150	broad.mit.edu	37	chr1	242511434	242511434	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttattttggcaatttttttcTgagagtccatcctcatcctc	5	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242511434	A	A	242511434	2	1	14	1	0	0	0	0	0	0	0	1	12144	1580	55	5		5	PLD5	1	242511434	Silent	SNP	T	TCGA-05-4405-01A-21D-1855-08	4459597	242511434	6739187	106	30854											
C1orf101	257044	broad.mit.edu	37	chr1	244643077	244643077	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttgctttctgtggtactAtagagttaggtaagtaatgc	10	5	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	244643077	G	G	244643077	3	3	14	1	0	0	0	0	1	0	0	0	1996	449	16	5	335	5	C1orf101	1	244643077	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	2131643	244643077	4607544	107	30855											
OR2G3	81469	broad.mit.edu	37	chr1	247769209	247769209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatatttctctggcactgGgctccactgaatgtatcctc	7	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247769209	T	T	247769209	3	4	14	1	0	0	0	0	1	0	0	0	11093	1232	43	2	324	2	OR2G3	1	247769209	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	3126132	247769209	1481412	108	30856											
OR6F1	343169	broad.mit.edu	37	chr1	247875457	247875457	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gataaccacaacagcaatcaCaaaggccacaagctctactg	6	13	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247875457	G	G	247875457	3	3	14	1	0	0	0	0	1	0	0	0	11295	478	17	4	329	4	OR6F1	1	247875457	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	106248	247875457	1375164	109	30857											
OR2T33	391195	broad.mit.edu	37	chr1	248436320	248436320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaaccttgtcatggttaGtggacctatgggatttgggt	12	7	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436320	T	T	248436320	3	4	14	1	0	0	0	0	1	0	0	0	11118	1029	36	3	168	3	OR2T33	1	248436320	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	560863	248436320	814301	110	30858											
TPO	7173	broad.mit.edu	37	chr2	1499813	1499813	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgcacagaggcgtgagctgGagaagcactccctgtctcgg	14	11	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1499813	T	T	1499813	4	4	14	1	0	0	0	0	0	1	0	0	16534	1175	41	3	2101	3	TPO	2	1499813	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08		1499813	241699560	111	30859											
LPIN1	23175	broad.mit.edu	37	chr2	11905848	11905848	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgggggtcctgcgctccCgagagaaagtggtgagctct	16	9	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11905848	A	A	11905848	2	1	14	1	0	0	0	0	0	0	0	1	9005	644	23	1		1	LPIN1	2	11905848	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	10406035	11905848	231293525	112	30860											
NBAS	51594	broad.mit.edu	37	chr2	15417165	15417165	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaaggcttctggatcagtCttcaaagtctcaaagagatg	10	7	5	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15417165	A	A	15417165	3	1	14	1	0	0	0	0	1	0	0	0	10280	912	32	3	1956	3	NBAS	2	15417165	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3511317	15417165	227782208	113	30861											
NBAS	51594	broad.mit.edu	37	chr2	15567913	15567913	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcatcagggagtcaccgTtaaaactcaaatttaaaaaa	6	7	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15567913	C	C	15567913	3	2	14	1	0	0	0	0	1	0	0	0	10280	1725	60	5	4894	5	NBAS	2	15567913	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	150748	15567913	227631460	114	30862											
NCOA1	8648	broad.mit.edu	37	chr2	24933898	24933898	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagacaggatggatggtgcGgtcaccagtgtaaccatcaa	12	9	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24933898	A	A	24933898	2	1	14	1	0	0	0	0	0	0	0	1	10323	1103	39	4		4	NCOA1	2	24933898	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	9365985	24933898	218265475	115	30863											
DNMT3A	1788	broad.mit.edu	37	chr2	25498280	25498280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaaagaaggaggaggggCccaccctccgccccctcaca	12	15	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25498280	A	A	25498280	1	1	14	0	1	0	0	0	0	0	0	0	4716	754	26	3		3	DNMT3A	2	25498280	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	564382	25498280	217701093	116	30864											
C2orf70	339778	broad.mit.edu	37	chr2	26798827	26798827	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctccctacggcaccacCaccctcaagtacttccagga	8	18	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26798827	A	A	26798827	2	1	14	1	0	0	0	0	0	0	0	1	2212	581	21	2		2	C2orf70	2	26798827	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	1300547	26798827	216400546	117	30865											
ZNF513	130557	broad.mit.edu	37	chr2	27600625	27600625	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaggtggcacagcggaaGggcttctcgcctgtgtgccg	17	12	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27600625	A	A	27600625	2	1	14	1	0	0	0	0	0	0	0	1	18085	987	35	4		4	ZNF513	2	27600625	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	801798	27600625	215598748	118	30866											
C2orf16	84226	broad.mit.edu	37	chr2	27801985	27801985	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accacaaagctggagatcacGatctaggacattccaggcag	10	11	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27801985	A	A	27801985	3	1	14	1	0	0	0	0	1	0	0	0	2179	1058	37	4	2548	4	C2orf16	2	27801985	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	201360	27801985	215397388	119	30867											
TRMT61B	55006	broad.mit.edu	37	chr2	29092772	29092772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggactgggcctgcgagagCatcgaaggatcctcggatcc	15	12	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29092772	A	A	29092772	3	1	14	1	0	0	0	0	1	0	0	0	16695	710	25	3	1089	3	TRMT61B	2	29092772	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1290787	29092772	214106601	120	30868											
LTBP1	4052	broad.mit.edu	37	chr2	33525618	33525618	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacaggggtaccagctgtcGgcagctaaagaccagtgtga	15	9	0	2	rs139837372		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33525618	A	A	33525618	2	1	14	1	0	0	0	0	0	0	0	1	9160	1103	39	4		4	LTBP1	2	33525618	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	4432846	33525618	209673755	121	30869											
DHX57	90957	broad.mit.edu	37	chr2	39042906	39042906	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttcagggggtagcaatgaGgctcaagtggattcattcct	12	7	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39042906	A	A	39042906	1	1	14	0	1	0	0	0	0	0	0	0	4553	1015	35	4		4	DHX57	2	39042906	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5517288	39042906	204156467	122	30870											
LRPPRC	10128	broad.mit.edu	37	chr2	44175160	44175161	+	Intron	INS	-	T	T													atggctgtcattgaaacaaaINSttttttttctgaccaaaagc							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44175161	T	T	44175160	6	5	14	0	1	1	1	0	0	0	0	0	9052	116	4	0		0	LRPPRC	2	44175160	Intron	INS	-	TCGA-05-4405-01A-21D-1855-08	5132254	44175160	199024213	123	30871											
TTC7A	57217	broad.mit.edu	37	chr2	47251456	47251456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgcccagtgacccccaGgtcatcctctatgtctcgct	9	17	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47251456	T	T	47251456	3	4	14	1	0	0	0	0	1	0	0	0	16838	991	35	2	1653	2	TTC7A	2	47251456	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	3076296	47251456	195947917	124	30872											
ARHGAP25	9938	broad.mit.edu	37	chr2	68962477	68962477	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtctgcagggagcatagtCtacttaaaaatggatctcgc	11	8	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68962477	A	A	68962477	1	1	14	0	1	0	0	0	0	0	0	0	876	928	32	3		3	ARHGAP25	2	68962477	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	21711021	68962477	174236896	125	30873											
ACTG2	72	broad.mit.edu	37	chr2	74143932	74143932	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccatcctgttctttgtaTaaagtcttgcctacctggga	7	11	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74143932	C	C	74143932	1	2	14	0	1	0	0	0	0	0	0	0	197	1421	49	5		5	ACTG2	2	74143932	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	5181455	74143932	169055441	126	30874											
HK2	3099	broad.mit.edu	37	chr2	75117984	75117984	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgaaatgtgatgtgtctttCctgcagtcagaggatggcag	13	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75117984	T	T	75117984	2	4	14	1	0	0	0	0	0	0	0	1	7258	854	30	4		4	HK2	2	75117984	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	974052	75117984	168081389	127	30875											
REG1B	5968	broad.mit.edu	37	chr2	79314114	79314114	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagggcaaggaaaaggctgGaaggtgaattaggggcttct	17	5	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79314114	T	T	79314114	1	4	14	0	1	0	0	0	0	0	0	0	13319	1189	41	3		3	REG1B	2	79314114	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4196130	79314114	163885259	128	30876											
PTCD3	55037	broad.mit.edu	37	chr2	86357893	86357893	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcacttgtgttttcctcctCtaaagacagagggccggttt	9	10	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86357893	T	T	86357893	1	4	14	0	1	0	0	0	0	0	0	0	12835	928	32	4		4	PTCD3	2	86357893	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	7043779	86357893	156841480	129	30877											
GPAT2	150763	broad.mit.edu	37	chr2	96698023	96698023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagggcagagaggatttgaGgaatgggaggagccacatta	17	5	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96698023	A	A	96698023	1	1	14	0	1	0	0	0	0	0	0	0	6654	1015	35	4		4	GPAT2	2	96698023	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	10340130	96698023	146501350	130	30878											
STARD7	56910	broad.mit.edu	37	chr2	96860740	96860740	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacatctgtgtaggttcCaaaaactagaatgaaaagaa	8	6	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96860740	G	G	96860740	3	3	14	1	0	0	0	0	1	0	0	0	15380	603	21	4	631	4	STARD7	2	96860740	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	162717	96860740	146338633	131	30879											
AFF3	3899	broad.mit.edu	37	chr2	100623335	100623335	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaagttctgaacacagTgtccgctgctgctgtgcttg	13	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100623335	G	G	100623335	3	3	14	1	0	0	0	0	1	0	0	0	358	1696	59	5	3124	5	AFF3	2	100623335	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	3762595	100623335	142576038	132	30880											
NPAS2	4862	broad.mit.edu	37	chr2	101604708	101604708	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcacaagccagcacctGctcagagaatcaagtgtgat	10	11	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101604708	T	T	101604708	2	4	14	1	0	0	0	0	0	0	0	1	10658	1306	46	3		3	NPAS2	2	101604708	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	981373	101604708	141594665	133	30881											
GPR45	11250	broad.mit.edu	37	chr2	105859317	105859317	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaaaaattccgcgaggcCtgcatagagttgctgcccca	9	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105859317	A	A	105859317	2	1	14	1	0	0	0	0	0	0	0	1	6761	668	24	2		2	GPR45	2	105859317	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	4254609	105859317	137340056	134	30882											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460416	107460416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattcgttgtctccattgCttcaagtgtggtttcatggc	10	9	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107460416	A	A	107460416	3	1	14	1	0	0	0	0	1	0	0	0	15340	796	28	3	1678	3	ST6GAL2	2	107460416	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1601099	107460416	135738957	135	30883											
RGPD4	285190	broad.mit.edu	37	chr2	108489238	108489238	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagtagcccagagtggatCtgaaagcaaagtggaaccta	11	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108489238	G	G	108489238	3	3	14	1	0	0	0	0	1	0	0	0	13396	913	32	4	4856	4	RGPD4	2	108489238	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1028822	108489238	134710135	136	30884											
RANBP2	5903	broad.mit.edu	37	chr2	109371228	109371228	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattaaaaaacactttcacGtgtattatttaaagtgtaaa	4	4	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109371228	A	A	109371228	1	1	14	0	1	0	0	0	0	0	0	0	13136	1160	40	4		4	RANBP2	2	109371228	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	881990	109371228	133828145	137	30885											
IL1F7	27178	broad.mit.edu	37	chr2	113671403	113671403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctggaaccaggcccaagCctccccaccatgaattttgt	7	17	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113671403	A	A	113671403	3	1	14	1	0	0	0	0	1	0	0	0	7725	738	26	3	123	3	IL1F7	2	113671403	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	4300175	113671403	129527970	138	30886											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521656	125521656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttccttcttttttaaaaCcacagcattatccggagttt	4	9	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521656	A	A	125521656	3	1	14	1	0	0	0	0	1	0	0	0	3682	507	18	3	2524	3	CNTNAP5	2	125521656	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	11850253	125521656	117677717	139	30887											
TUBA3D	113457	broad.mit.edu	37	chr2	132235910	132235910	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtgagactggagctggCaagcacgtgcccagagcagt	14	10	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132235910	A	A	132235910	2	1	14	1	0	0	0	0	0	0	0	1	16873	697	25	3		3	TUBA3D	2	132235910	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	6714254	132235910	110963463	140	30888											
NXPH2	11249	broad.mit.edu	37	chr2	139429037	139429037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctccgtgatgttggccaGccaatcccaaaagttttcca	7	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139429037	T	T	139429037	3	4	14	1	0	0	0	0	1	0	0	0	10886	962	34	3	548	3	NXPH2	2	139429037	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	7193127	139429037	103770336	141	30889											
LRP1B	53353	broad.mit.edu	37	chr2	141079783	141079783	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatcacattaaatttccacTgatgtggagtatctcactca	5	9	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141079783	C	C	141079783	1	2	14	0	1	0	0	0	0	0	0	0	9042	1595	55	5		5	LRP1B	2	141079783	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	1650746	141079783	102119590	142	30890											
LRP1B	53353	broad.mit.edu	37	chr2	141274503	141274503	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcacaatctttctgaccatCgcatatccaggtattcaaaa	4	12	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141274503	T	T	141274503	3	4	14	1	0	0	0	0	1	0	0	0	9042	884	31	4	5863	4	LRP1B	2	141274503	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	194720	141274503	101924870	143	30891											
LRP1B	53353	broad.mit.edu	37	chr2	141707905	141707905	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcatctgccactggaacatCtgaactgattatcaaagcaa	7	10	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141707905	G	G	141707905	3	3	14	1	0	0	0	0	1	0	0	0	9042	913	32	4	11052	4	LRP1B	2	141707905	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	433402	141707905	101491468	144	30892											
DPP4	1803	broad.mit.edu	37	chr2	162850029	162850029	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaattcctgaggcagtttaTaaactgaaacggggtcaaag	10	6	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162850029	C	C	162850029	1	2	14	0	1	0	0	0	0	0	0	0	4769	1421	49	5		5	DPP4	2	162850029	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	21142124	162850029	80349344	145	30893											
SCN3A	6328	broad.mit.edu	37	chr2	165948713	165948713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcagctagaaggtcctgGggcaactgtttctctgtaac	10	9	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165948713	T	T	165948713	1	4	14	0	1	0	0	0	0	0	0	0	14031	1247	43	2		2	SCN3A	2	165948713	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3098684	165948713	77250660	146	30894											
TTC21B	79809	broad.mit.edu	37	chr2	166773863	166773863	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtcttttgattttgtGgaagctccaattcttttcat	6	7	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166773863	A	A	166773863	2	1	14	1	0	0	0	0	0	0	0	1	16814	1335	47	4		4	TTC21B	2	166773863	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	825150	166773863	76425510	147	30895											
SCN9A	6335	broad.mit.edu	37	chr2	167142874	167142874	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtagacaacctcttttcaTgtgctcgcctatgcccttcg	9	13	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167142874	G	G	167142874	3	3	14	1	0	0	0	0	1	0	0	0	14038	1464	51	5	4427	5	SCN9A	2	167142874	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	369011	167142874	76056499	148	30896											
XIRP2	129446	broad.mit.edu	37	chr2	167760365	167760365	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgtgtttgaggctcctAagagtggaaacaaaccagct	13	7	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167760365	G	G	167760365	3	3	14	1	0	0	0	0	1	0	0	0	17557	363	13	5	375	5	XIRP2	2	167760365	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	617491	167760365	75439008	149	30897											
XIRP2	129446	broad.mit.edu	37	chr2	168107427	168107427	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacttccccttctccaccCaggagtcgctctgaacaact	5	17	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168107427	A	A	168107427	2	1	14	1	0	0	0	0	0	0	0	1	17557	581	21	2		2	XIRP2	2	168107427	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	347062	168107427	75091946	150	30898											
DLX1	1745	broad.mit.edu	37	chr2	172952820	172952820	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggtagtgcgttggccaaCggtcgggccctgtctgctgg	18	10	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172952820	T	T	172952820	2	4	14	1	0	0	0	0	0	0	0	1	4610	535	19	4		4	DLX1	2	172952820	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	4845393	172952820	70246553	151	30899											
PDE11A	50940	broad.mit.edu	37	chr2	178565767	178565767	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgctttgtgtctacctgtGgcaccacaaaggaagagagg	12	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178565767	A	A	178565767	1	1	14	0	1	0	0	0	0	0	0	0	11725	1363	47	4		4	PDE11A	2	178565767	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5612947	178565767	64633606	152	30900											
TTN	7273	broad.mit.edu	37	chr2	179441915	179441915	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcagcagaaacattactGatttcaacaggacctggggg	10	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179441915	A	A	179441915	2	1	14	1	0	0	0	0	0	0	0	1	16861	1280	45	4		4	TTN	2	179441915	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	876148	179441915	63757458	153	30901											
TTN	7273	broad.mit.edu	37	chr2	179567252	179567252	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcctgaagttgtatttcTggctctctgtcagttctgtt	8	9	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179567252	C	C	179567252	3	2	14	1	0	0	0	0	1	0	0	0	16861	1580	55	5	74191	5	TTN	2	179567252	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	125337	179567252	63632121	154	30902											
PDE1A	5136	broad.mit.edu	37	chr2	183129158	183129158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtctatttcaaaaaagtaGccaaagagagaaagagcaag	9	5	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183129158	T	T	183129158	1	4	14	0	1	0	0	0	0	0	0	0	11727	986	34	3		3	PDE1A	2	183129158	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3561906	183129158	60070215	155	30903											
CALCRL	10203	broad.mit.edu	37	chr2	188280540	188280540	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggctacaccaacagggtgGtggatcatggtccacatggc	13	10	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	188280540	C	C	188280540	1	2	14	0	1	0	0	0	0	0	0	0	2606	1276	44	4		4	CALCRL	2	188280540	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5151382	188280540	54918833	156	30904											
COL3A1	1281	broad.mit.edu	37	chr2	189872191	189872191	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttccaatatgtatgtgTgtatatgacttcaattcaaa	5	5	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189872191	C	C	189872191	1	2	14	0	1	0	0	0	0	0	0	0	3720	1711	59	5		5	COL3A1	2	189872191	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	1591651	189872191	53327182	157	30905											
COL5A2	1290	broad.mit.edu	37	chr2	189910587	189910587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggagttccaggggcaCcctgagagcctggcagacct	15	13	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189910587	A	A	189910587	3	1	14	1	0	0	0	0	1	0	0	0	3729	507	18	3	1287	3	COL5A2	2	189910587	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	38396	189910587	53288786	158	30906											
SLC39A10	57181	broad.mit.edu	37	chr2	196545644	196545644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtcatgatcctggtcgtgGacaccaagatcttgatcctg	11	10	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196545644	T	T	196545644	3	4	14	1	0	0	0	0	1	0	0	0	14727	1174	41	3	880	3	SLC39A10	2	196545644	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	6635057	196545644	46653729	159	30907											
NRP2	8828	broad.mit.edu	37	chr2	206614460	206614460	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttacacagactccaagcccAcggtagagacgctgggaccc	10	15	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206614460	G	G	206614460	3	3	14	1	0	0	0	0	1	0	0	0	10756	159	6	5	1867	5	NRP2	2	206614460	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	10068816	206614460	36584913	160	30908											
ZDBF2	57683	broad.mit.edu	37	chr2	207171353	207171353	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagaataagagtgttcagTctagccgttcttctctgagt	10	7	4	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207171353	G	G	207171353	3	3	14	1	0	0	0	0	1	0	0	0	17725	1667	58	5	2111	5	ZDBF2	2	207171353	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	556893	207171353	36028020	161	30909											
RPE	6120	broad.mit.edu	37	chr2	210867544	210867544	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggtcgggcttgccgcgcgGcggggcggatcagtgcacct	18	14	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210867544	A	A	210867544	1	1	14	0	1	0	0	0	0	0	0	0	13655	1218	42	4		4	RPE	2	210867544	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3696191	210867544	32331829	162	30910											
CPS1	1373	broad.mit.edu	37	chr2	211456608	211456608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaggctttcattactgCtcagaatcatggctatgcct	7	11	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211456608	A	A	211456608	3	1	14	1	0	0	0	0	1	0	0	0	3855	797	28	3	1061	3	CPS1	2	211456608	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	589064	211456608	31742765	163	30911											
CCDC108	255101	broad.mit.edu	37	chr2	219895376	219895376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaattccaatcctgggggCgtgagtcctgccgcccctcc	12	15	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219895376	A	A	219895376	1	1	14	0	1	0	0	0	0	0	0	0	2769	783	27	3		3	CCDC108	2	219895376	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	8438768	219895376	23303997	164	30912											
FAM134A	79137	broad.mit.edu	37	chr2	220046000	220046000	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggttcatgagatgccctgGaattgagatcttctccagtt	12	8	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220046000	T	T	220046000	1	4	14	0	1	0	0	0	0	0	0	0	5491	1189	41	3		3	FAM134A	2	220046000	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	150624	220046000	23153373	165	30913											
DNPEP	23549	broad.mit.edu	37	chr2	220246037	220246037	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccctccatcacaccttccCaggcagggcccaccctcacc	5	23	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220246037	T	T	220246037	1	4	14	0	1	0	0	0	0	0	0	0	4719	609	21	4		4	DNPEP	2	220246037	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	200037	220246037	22953336	166	30914											
SPEG	10290	broad.mit.edu	37	chr2	220353067	220353067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccacagagagggaggcCagcaagtggccctgagccca	13	14	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220353067	A	A	220353067	1	1	14	0	1	0	0	0	0	0	0	0	15154	609	21	2		2	SPEG	2	220353067	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	107030	220353067	22846306	167	30915											
ACCN4	55515	broad.mit.edu	37	chr2	220397160	220397160	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgctgtgaaaaggaggccGtgcttcagcgctgccactgc	14	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220397160	A	A	220397160	3	1	14	1	0	0	0	0	1	0	0	0	131	1145	40	4	1374	4	ACCN4	2	220397160	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	44093	220397160	22802213	168	30916											
DIS3L2	129563	broad.mit.edu	37	chr2	233103338	233103338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgagagggctacaagcGtctacttggttcaaaaggta	12	9	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233103338	T	T	233103338	3	4	14	1	0	0	0	0	1	0	0	0	4577	1145	40	3	1338	3	DIS3L2	2	233103338	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	12706178	233103338	10096035	169	30917											
ALPI	248	broad.mit.edu	37	chr2	233323382	233323382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacagcaaagcctacacGtccatcctgtacggcaatgg	10	13	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233323382	T	T	233323382	2	4	14	1	0	0	0	0	0	0	0	1	543	1132	40	3		3	ALPI	2	233323382	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	220044	233323382	9875991	170	30918											
UGT1A8	54576	broad.mit.edu	37	chr2	234526902	234526902	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaaggtgcacagtgCcctgctcctctttcctatgt	9	12	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234526902	T	T	234526902	2	4	14	1	0	0	0	0	0	0	0	1	17077	747	26	4		4	UGT1A8	2	234526902	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	1203520	234526902	8672471	171	30919											
UGT1A9	54600	broad.mit.edu	37	chr2	234581299	234581299	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattctccaaacacctgttaCggagtatgatctctacagcc	6	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234581299	G	G	234581299	3	3	14	1	0	0	0	0	1	0	0	0	17078	536	19	4	721	4	UGT1A9	2	234581299	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	54397	234581299	8618074	172	30920											
DNAJB3	414061	broad.mit.edu	37	chr2	234652434	234652434	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccacctgcttgaatctcctCtccgcttcctccttgttctc	5	18	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234652434	A	A	234652434	3	1	14	1	0	0	0	0	1	0	0	0	4661	912	32	3	312	3	DNAJB3	2	234652434	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	71135	234652434	8546939	173	30921											
COL6A3	1293	broad.mit.edu	37	chr2	238285946	238285946	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaactggcccacaagatTggctgagccgtcaaagagga	14	9	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238285946	C	C	238285946	3	2	14	1	0	0	0	0	1	0	0	0	3733	1812	63	5	7193	5	COL6A3	2	238285946	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	3633512	238285946	4913427	174	30922											
ANKMY1	51281	broad.mit.edu	37	chr2	241420438	241420438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgcaggtcaggatccCgtagcagcgagggcagggca	16	11	1	0	rs149189286		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241420438	A	A	241420438	3	1	14	1	0	0	0	0	1	0	0	0	634	652	23	1	138	1	ANKMY1	2	241420438	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3134492	241420438	1778935	175	30923											
AQP12B	653437	broad.mit.edu	37	chr2	241622288	241622288	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgagatgctgtgcctgcagGacacctgaggggacagagca	15	11	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241622288	A	A	241622288	1	1	14	0	1	0	0	0	0	0	0	0	827	1189	41	4		4	AQP12B	2	241622288	5'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	201850	241622288	1577085	176	30924											
CHL1	10752	broad.mit.edu	37	chr3	447225	447226	+	Missense_Mutation	DNP	GG	TT	TT													aagccttcggtcccttaataGggatatgcagcctactgaaa							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	447226	TT	TT	447225	3	4	14	1	0	0	0	0	1	0	0	0	3380	1000	35	2	3608	2	CHL1	3	447225	Missense_Mutation	DNP	GG	TCGA-05-4405-01A-21D-1855-08		447225	197575205	177	30925											
DAZL	1618	broad.mit.edu	37	chr3	16633690	16633690	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagtaatgtaaagacgActctttcactcactcttagt	5	9	5	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16633690	G	G	16633690	1	3	14	0	1	0	0	0	0	0	0	0	4279	290	10	5		5	DAZL	3	16633690	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	16186465	16633690	181388740	178	30926											
TBC1D5	9779	broad.mit.edu	37	chr3	17208305	17208305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctctggccttggcctcggCcctggccctggccgctggag	15	17	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17208305	A	A	17208305	3	1	14	1	0	0	0	0	1	0	0	0	15745	739	26	3	347	3	TBC1D5	3	17208305	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	574615	17208305	180814125	179	30927											
TBC1D5	9779	broad.mit.edu	37	chr3	17299997	17299997	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagaaaaaggggacttaCcggcttttattcatgaggtc	10	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17299997	A	A	17299997	5	1	14	1	0	0	0	0	0	0	1	0	15745	521	18	3	1153	3	TBC1D5	3	17299997	Splice_Site	SNP	C	TCGA-05-4405-01A-21D-1855-08	91692	17299997	180722433	180	30928											
TBC1D5	9779	broad.mit.edu	37	chr3	17446355	17446355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacattaattaaatatactaTttacttactatttctttaat	0	5	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17446355	C	C	17446355	1	2	14	0	1	0	0	0	0	0	0	0	15745	1508	52	5		5	TBC1D5	3	17446355	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	146358	17446355	180576075	181	30929											
KCNH8	131096	broad.mit.edu	37	chr3	19575253	19575253	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagccttgattattcacctTcccactaccaggttgtccaa	5	14	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19575253	A	A	19575253	3	1	14	1	0	0	0	0	1	0	0	0	8108	1783	62	5	3048	5	KCNH8	3	19575253	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	2128898	19575253	178447177	182	30930											
EFHB	151651	broad.mit.edu	37	chr3	19938246	19938246	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaactttcttcaggtgaTgccgaactgctgcaatcagg	9	9	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19938246	C	C	19938246	3	2	14	1	0	0	0	0	1	0	0	0	4985	1464	51	5	863	5	EFHB	3	19938246	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	362993	19938246	178084184	183	30931											
ZNF385D	79750	broad.mit.edu	37	chr3	21605967	21605967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaattttgacatgctcaGttactggagaaaatgtctta	8	5	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21605967	T	T	21605967	1	4	14	0	1	0	0	0	0	0	0	0	18004	1044	36	3		3	ZNF385D	3	21605967	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1667721	21605967	176416463	184	30932											
RARB	5915	broad.mit.edu	37	chr3	25621956	25621956	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgacatgtcaccccctcTaattggaaacacattgaatt	7	11	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25621956	A	A	25621956	1	1	14	0	1	0	0	0	0	0	0	0	13161	1537	53	5		5	RARB	3	25621956	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	4015989	25621956	172400474	185	30933											
TMPPE	643853	broad.mit.edu	37	chr3	33134917	33134917	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcccagaggagcgacagcCgtccgcaggaccgaggcttc	15	14	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33134917	T	T	33134917	2	4	14	1	0	0	0	0	0	0	0	1	16361	639	23	4		4	TMPPE	3	33134917	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	7512961	33134917	164887513	186	30934											
GOLGA4	2803	broad.mit.edu	37	chr3	37378685	37378685	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctttttttttttttcTtttttttctttgagacagat	3	5	4	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37378685	C	C	37378685	1	2	14	0	1	0	0	0	0	0	0	0	6619	1624	56	5		5	GOLGA4	3	37378685	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	4243768	37378685	160643745	187	30935											
NKTR	4820	broad.mit.edu	37	chr3	42674309	42674309	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataaacatgcaatgaaccCaaaagggtacgtgtaaaaca	8	7	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42674309	A	A	42674309	3	1	14	1	0	0	0	0	1	0	0	0	10543	594	21	2	797	2	NKTR	3	42674309	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	5295624	42674309	155348121	188	30936											
CYP8B1	1582	broad.mit.edu	37	chr3	42916449	42916449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagaaagaggtaggccccGtgttcccctgggaggcccag	14	14	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42916449	T	T	42916449	3	4	14	1	0	0	0	0	1	0	0	0	4231	1145	40	3	649	3	CYP8B1	3	42916449	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	242140	42916449	155105981	189	30937											
ZNF445	353274	broad.mit.edu	37	chr3	44496938	44496938	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcctgcactggagtaTagctttcatcctcttcttcc	8	13	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44496938	C	C	44496938	3	2	14	1	0	0	0	0	1	0	0	0	18045	1406	49	5	3015	5	ZNF445	3	44496938	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1580489	44496938	153525492	190	30938											
SACM1L	22908	broad.mit.edu	37	chr3	45784960	45784960	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgccaaaatgtgctaaacAgctgaaaactgggtctgata	10	7	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45784960	G	G	45784960	1	3	14	0	1	0	0	0	0	0	0	0	13914	203	7	5		5	SACM1L	3	45784960	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1288022	45784960	152237470	191	30939											
PLXNB1	5364	broad.mit.edu	37	chr3	48459666	48459666	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaccacaggcctcccgggtCacacaacgtggacgctcccc	9	19	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48459666	A	A	48459666	2	1	14	1	0	0	0	0	0	0	0	1	12218	813	29	3		3	PLXNB1	3	48459666	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2674706	48459666	149562764	192	30940											
SHISA5	51246	broad.mit.edu	37	chr3	48511280	48511280	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacccggggcacctcgccCctccccagaccagcatccac	9	21	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48511280	T	T	48511280	1	4	14	0	1	0	0	0	0	0	0	0	14396	638	22	4		4	SHISA5	3	48511280	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	51614	48511280	149511150	193	30941											
COL7A1	1294	broad.mit.edu	37	chr3	48614179	48614179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggataccaggagctccaCgctcacccttggggccatca	10	15	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48614179	A	A	48614179	3	1	14	1	0	0	0	0	1	0	0	0	3736	536	19	3	3412	3	COL7A1	3	48614179	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	102899	48614179	149408251	194	30942											
LAMB2	3913	broad.mit.edu	37	chr3	49161443	49161443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgggcacactggtcacagCgcacaccagacacccctggg	11	17	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49161443	A	A	49161443	3	1	14	1	0	0	0	0	1	0	0	0	8683	768	27	3	1917	3	LAMB2	3	49161443	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	547264	49161443	148860987	195	30943											
VPRBP	9730	broad.mit.edu	37	chr3	51475837	51475837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagagagcttccgtggaCtgggacgcttgttttcctgc	13	10	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51475837	A	A	51475837	3	1	14	1	0	0	0	0	1	0	0	0	17312	565	20	3	3842	3	VPRBP	3	51475837	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2314394	51475837	146546593	196	30944											
ALAS1	211	broad.mit.edu	37	chr3	52236729	52236729	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcttcaggaggatgtgcagGaaatgaatgccgtgaggaaa	15	5	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52236729	T	T	52236729	4	4	14	1	0	0	0	0	0	1	0	0	484	1175	41	3	412	3	ALAS1	3	52236729	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	760892	52236729	145785701	197	30945											
STAB1	23166	broad.mit.edu	37	chr3	52546575	52546575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggggcttgaatttgccCctggtcctgtgacctcagac	13	11	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52546575	A	A	52546575	1	1	14	0	1	0	0	0	0	0	0	0	15355	638	22	2		2	STAB1	3	52546575	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	309846	52546575	145475855	198	30946											
ASB14	142686	broad.mit.edu	37	chr3	57311911	57311911	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaacaacctttccagagAgatgttgcagccatgacaaa	8	11	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57311911	T	T	57311911	3	4	14	1	0	0	0	0	1	0	0	0	1022	304	11	5	302	5	ASB14	3	57311911	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	4765336	57311911	140710519	199	30947											
LRIG1	26018	broad.mit.edu	37	chr3	66502041	66502041	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatggtaccgctgtcaactCattattattgaggtacctgt	10	8	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66502041	A	A	66502041	4	1	14	1	0	0	0	0	0	1	0	0	9031	835	29	3	3042	3	LRIG1	3	66502041	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	9190130	66502041	131520389	200	30948											
FOXP1	27086	broad.mit.edu	37	chr3	71015118	71015118	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccattgccccgttcagctcTtcccgtattgcgctggctaa	8	15	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71015118	C	C	71015118	2	2	14	1	0	0	0	0	0	0	0	1	6086	1606	56	5		5	FOXP1	3	71015118	Silent	SNP	T	TCGA-05-4405-01A-21D-1855-08	4513077	71015118	127007312	201	30949											
EIF4E3	317649	broad.mit.edu	37	chr3	71745747	71745747	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttagattaaatatctcttCatacatttagtttaacaaca	3	6	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71745747	A	A	71745747	1	1	14	0	1	0	0	0	0	0	0	0	5073	841	29	3		3	EIF4E3	3	71745747	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	730629	71745747	126276683	202	30950											
PDZRN3	23024	broad.mit.edu	37	chr3	73432636	73432636	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagattttcttattcctcttCttcatcatctttttgtggct	4	9	6	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73432636	A	A	73432636	3	1	14	1	0	0	0	0	1	0	0	0	11803	912	32	3	123	3	PDZRN3	3	73432636	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1686889	73432636	124589794	203	30951											
PDZRN3	23024	broad.mit.edu	37	chr3	73450069	73450069	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagacaaggatgttcttcAtacctccagctccagctcct	7	13	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73450069	G	G	73450069	1	3	14	0	1	0	0	0	0	0	0	0	11803	232	8	5		5	PDZRN3	3	73450069	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	17433	73450069	124572361	204	30952											
ROBO2	6092	broad.mit.edu	37	chr3	77147283	77147283	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggagggccggccaacgccCaccattgagtggtacaaaga	14	12	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77147283	T	T	77147283	2	4	14	1	0	0	0	0	0	0	0	1	13625	594	21	4		4	ROBO2	3	77147283	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	3697214	77147283	120875147	205	30953											
ROBO2	6092	broad.mit.edu	37	chr3	77542523	77542523	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggatgatgcagacttgCcaagaggaaggtaagaccaa	12	6	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77542523	G	G	77542523	3	3	14	1	0	0	0	0	1	0	0	0	13625	739	26	4	816	4	ROBO2	3	77542523	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	395240	77542523	120479907	206	30954											
ARL6	84100	broad.mit.edu	37	chr3	97499142	97499142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctggtcattcttcctaCccttagataaagtaatttgt	5	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97499142	A	A	97499142	1	1	14	0	1	0	0	0	0	0	0	0	945	522	18	3		3	ARL6	3	97499142	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	19956619	97499142	100523288	207	30955											
OR5K4	403278	broad.mit.edu	37	chr3	98072805	98072805	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttctctgccatctatctGgtcaccatggtggggaatct	11	10	5	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98072805	T	T	98072805	2	4	14	1	0	0	0	0	0	0	0	1	11263	1335	47	2		2	OR5K4	3	98072805	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	573663	98072805	99949625	208	30956											
OR5K1	26339	broad.mit.edu	37	chr3	98188738	98188738	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttttattttctttgcacTgtggaaactgcagactgctt	8	8	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98188738	A	A	98188738	2	1	14	1	0	0	0	0	0	0	0	1	11260	1567	55	5		5	OR5K1	3	98188738	Silent	SNP	T	TCGA-05-4405-01A-21D-1855-08	115933	98188738	99833692	209	30957											
MYH15	22989	broad.mit.edu	37	chr3	108147249	108147249	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacactgagtcactaagcTggcttatttttcttttccct	5	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108147249	A	A	108147249	1	1	14	0	1	0	0	0	0	0	0	0	10128	1595	55	5		5	MYH15	3	108147249	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	9958511	108147249	89875181	210	30958											
LSAMP	4045	broad.mit.edu	37	chr3	116163902	116163902	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccacgccgaggtgcgggtCcgcggggtgctctggagggg	22	11	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116163902	A	A	116163902	1	1	14	0	1	0	0	0	0	0	0	0	9135	870	30	3		3	LSAMP	3	116163902	5'UTR	SNP	C	TCGA-05-4405-01A-21D-1855-08	8016653	116163902	81858528	211	30959											
GSK3B	2932	broad.mit.edu	37	chr3	119760366	119760366	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaccagaaaagaactttgaTtctttagagtcacttatatt	6	6	2	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119760366	C	C	119760366	1	2	14	0	1	0	0	0	0	0	0	0	6890	1508	52	5		5	GSK3B	3	119760366	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	3596464	119760366	78262064	212	30960											
FBXO40	51725	broad.mit.edu	37	chr3	121345492	121345492	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccaaataaagccagccAgagggtaacacccctatatt	8	12	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121345492	T	T	121345492	1	4	14	0	1	0	0	0	0	0	0	0	5806	203	7	5		5	FBXO40	3	121345492	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1585126	121345492	76676938	213	30961											
PDIA5	10954	broad.mit.edu	37	chr3	122864369	122864369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgatctctccccacagGgtgtggccactgtaagaaaa	9	12	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122864369	T	T	122864369	3	4	14	1	0	0	0	0	1	0	0	0	11765	1246	43	2	957	2	PDIA5	3	122864369	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1518877	122864369	75158061	214	30962											
UROC1	131669	broad.mit.edu	37	chr3	126220156	126220156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagcagaacaggtgccccCtgcacctgtgcataggtgcc	11	13	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126220156	A	A	126220156	1	1	14	0	1	0	0	0	0	0	0	0	17154	695	24	2		2	UROC1	3	126220156	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3355787	126220156	71802274	215	30963											
CPNE4	131034	broad.mit.edu	37	chr3	131388541	131388542	+	Missense_Mutation	DNP	CC	AA	AA													ttagccggcggtctgggtctCcgctgcatagagaatttaca							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	131388542	AA	AA	131388541	3	1	14	1	0	0	0	0	1	0	0	0	3846	855	30	3	1054	3	CPNE4	3	131388541	Missense_Mutation	DNP	CC	TCGA-05-4405-01A-21D-1855-08	5168385	131388541	66633889	216	30964											
CLSTN2	64084	broad.mit.edu	37	chr3	140281839	140281839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagggaagccaaggctcacCcattccctcattcattcaga	7	13	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140281839	A	A	140281839	1	1	14	0	1	0	0	0	0	0	0	0	3594	638	22	2		2	CLSTN2	3	140281839	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	8893298	140281839	57740591	217	30965											
TRIM42	287015	broad.mit.edu	37	chr3	140401341	140401341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgggagcagcgataccCaggtggatgaagtaaagtca	14	8	1	1	rs149207203	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140401341	A	A	140401341	3	1	14	1	0	0	0	0	1	0	0	0	16641	595	21	2	385	2	TRIM42	3	140401341	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	119502	140401341	57621089	218	30966											
CCDC39	339829	broad.mit.edu	37	chr3	180377471	180377471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttaaactaacctgtgcGcttatagtctctgtaagttc	6	10	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180377471	T	T	180377471	3	4	14	1	0	0	0	0	1	0	0	0	2838	1078	38	3	2286	3	CCDC39	3	180377471	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	39976130	180377471	17644959	219	30967											
RNF168	165918	broad.mit.edu	37	chr3	196229932	196229932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacggtcgactggaagcacGgtttacacagcgtgtggtta	14	9	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196229932	T	T	196229932	3	4	14	1	0	0	0	0	1	0	0	0	13570	1116	39	1	1626	1	RNF168	3	196229932	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	15852461	196229932	1792498	220	30968											
PDE6B	5158	broad.mit.edu	37	chr4	619514	619514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccctgagaatgtggcCgcggcctgcgaggacgggtg	18	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	619514	A	A	619514	2	1	14	1	0	0	0	0	0	0	0	1	11740	639	23	1		1	PDE6B	4	619514	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08		619514	190534762	221	30969											
SH3BP2	6452	broad.mit.edu	37	chr4	2829097	2829097	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcctctccccacctggcctCctcttggccgctgtggagga	11	17	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2829097	T	T	2829097	1	4	14	0	1	0	0	0	0	0	0	0	14358	870	30	4		4	SH3BP2	4	2829097	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2209583	2829097	188325179	222	30970											
GRK4	2868	broad.mit.edu	37	chr4	3005809	3005809	+	Intron	SNP	G	T	T													gacaacagcagaactctggaGagtgggacggggtggagggt							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3005809	T	T	3005809	1	4	14	0	1	0	0	0	0	0	0	0	6857	957	33	3		3	GRK4	4	3005809	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	176712	3005809	188148467	223	30971	181	2									
GRK4	2868	broad.mit.edu	37	chr4	3005819	3005819	+	Intron	SNP	G	T	T													gaactctggagagtgggacgGggtggagggtccaggtggca							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3005819	T	T	3005819	1	4	14	0	1	0	0	0	0	0	0	0	6857	1247	43	2		2	GRK4	4	3005819	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	10	3005819	188148457	224	30972	181	2									
HTT	3064	broad.mit.edu	37	chr4	3211509	3211509	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagggatgtgaagtccccttGaacgccgcccatcatgttcc	10	14	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3211509	T	T	3211509	1	4	14	0	1	0	0	0	0	0	0	0	7527	1305	45	3		3	HTT	4	3211509	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	205690	3211509	187942767	225	30973											
JAKMIP1	152789	broad.mit.edu	37	chr4	6082074	6082074	+	Intron	SNP	A	C	C													agacagaccaccacagggttAcccgccaacagtgtttgtta							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6082074	C	C	6082074	1	2	14	0	1	0	0	0	0	0	0	0	8010	406	14	5		5	JAKMIP1	4	6082074	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	2870565	6082074	185072202	226	30974	182	2									
JAKMIP1	152789	broad.mit.edu	37	chr4	6082077	6082077	+	Intron	SNP	C	A	A													cagaccaccacagggttaccCgccaacagtgtttgttaggg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6082077	A	A	6082077	1	1	14	0	1	0	0	0	0	0	0	0	8010	667	23	1		1	JAKMIP1	4	6082077	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3	6082077	185072199	227	30975	182	2									
CPZ	8532	broad.mit.edu	37	chr4	8607723	8607723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgcccccagtggagccCgaggtgaagctcatcggcaa	12	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8607723	A	A	8607723	2	1	14	1	0	0	0	0	0	0	0	1	3871	639	23	1		1	CPZ	4	8607723	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2525646	8607723	182546553	228	30976											
BOD1L	259282	broad.mit.edu	37	chr4	13605874	13605874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctggtttcaaattactatCcatgttagtggagtccatat	7	7	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13605874	A	A	13605874	3	1	14	1	0	0	0	0	1	0	0	0	1489	855	30	3	6573	3	BOD1L	4	13605874	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	4998151	13605874	177548402	229	30977											
LDB2	9079	broad.mit.edu	37	chr4	16504594	16504594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggaatctaggacagacaCactcgtgtactgtacaacgg	12	10	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16504594	A	A	16504594	1	1	14	0	1	0	0	0	0	0	0	0	8768	493	17	3		3	LDB2	4	16504594	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2898720	16504594	174649682	230	30978											
GPR125	166647	broad.mit.edu	37	chr4	22389516	22389516	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacgcatcttttttactagTggttgaaactggcttttcaa	7	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22389516	C	C	22389516	3	2	14	1	0	0	0	0	1	0	0	0	6704	1696	59	5	191	5	GPR125	4	22389516	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	5884922	22389516	168764760	231	30979											
GPR125	166647	broad.mit.edu	37	chr4	22390174	22390174	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatggtggaccacgaagaaCgcactgaagcttaaacttgt	10	9	0	2	rs12700	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22390174	G	G	22390174	2	3	14	1	0	0	0	0	0	0	0	1	6704	523	19	4		4	GPR125	4	22390174	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	658	22390174	168764102	232	30980											
PPARGC1A	10891	broad.mit.edu	37	chr4	23814457	23814457	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgatattcttccctcttcagCctctcgtgctgatattcctc	5	15	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23814457	G	G	23814457	3	3	14	1	0	0	0	0	1	0	0	0	12396	738	26	4	480	4	PPARGC1A	4	23814457	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1424283	23814457	167339819	233	30981											
SEPSECS	51091	broad.mit.edu	37	chr4	25125605	25125605	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtacattatctagttttaaaGccatttcttcaatatccaca	3	9	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25125605	C	C	25125605	3	2	14	1	0	0	0	0	1	0	0	0	14171	971	34	4	55	4	SEPSECS	4	25125605	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1311148	25125605	166028671	234	30982											
WDR19	57728	broad.mit.edu	37	chr4	39207199	39207199	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataggtatggtgatggccgcAtcatgattggtttttcatgt	12	5	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39207199	T	T	39207199	3	4	14	1	0	0	0	0	1	0	0	0	17406	217	8	5	767	5	WDR19	4	39207199	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	14081594	39207199	151947077	235	30983											
GABRA4	2557	broad.mit.edu	37	chr4	46979500	46979500	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgtcatattatgtgagaCagatttctttccattcctga	7	8	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46979500	T	T	46979500	3	4	14	1	0	0	0	0	1	0	0	0	6223	478	17	4	1267	4	GABRA4	4	46979500	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	7772301	46979500	144174776	236	30984											
GABRB1	2560	broad.mit.edu	37	chr4	47033557	47033557	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaggtgtcttttggtagtGagcgcgctctgcgcatgcgc	14	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47033557	T	T	47033557	1	4	14	0	1	0	0	0	0	0	0	0	6226	1305	45	3		3	GABRB1	4	47033557	5'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	54057	47033557	144120719	237	30985											
LPHN3	23284	broad.mit.edu	37	chr4	62845477	62845477	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcctgattgggatcaaccGaactgaccaaccagtaagca	8	12	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62845477	A	A	62845477	3	1	14	1	0	0	0	0	1	0	0	0	9004	1058	37	4	2856	4	LPHN3	4	62845477	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	15811920	62845477	128308799	238	30986											
EPHA5	2044	broad.mit.edu	37	chr4	66189812	66189812	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagaatcattcacttgaaGaagcgacatttacatgaagt	8	7	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66189812	A	A	66189812	1	1	14	0	1	0	0	0	0	0	0	0	5212	957	33	4		4	EPHA5	4	66189812	3'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	3344335	66189812	124964464	239	30987											
EPHA5	2044	broad.mit.edu	37	chr4	66467644	66467645	+	Nonsense_Mutation	DNP	CC	AG	AG													ttgaaaagcaagataaaatcCctttttgcttagaggtccta							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	66467645	AG	AG	66467644	4	1	14	1	0	0	0	0	0	1	0	0	5212	632	22	2	2552	2	EPHA5	4	66467644	Nonsense_Mutation	DNP	CC	TCGA-05-4405-01A-21D-1855-08	277832	66467644	124686632	240	30988											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69107500	69107500	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtagtccatagtggccaagAtctttgggaagatatgccgt	12	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69107500	T	T	69107500	3	4	14	1	0	0	0	0	1	0	0	0	16363	333	12	5	1255	5	TMPRSS11B	4	69107500	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	2639856	69107500	122046776	241	30989											
GC	2638	broad.mit.edu	37	chr4	72631444	72631444	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaatataatatcttagccTataattagaaaattctcatt	2	5	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72631444	A	A	72631444	1	1	14	0	1	0	0	0	0	0	0	0	6344	1537	53	5		5	GC	4	72631444	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	3523944	72631444	118522832	242	30990											
NPFFR2	10886	broad.mit.edu	37	chr4	72897699	72897699	+	Frame_Shift_Del	DEL	G	-	-													tctgcaccggacaaggaggcGgggagggagcgcagagcact							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72897699	-	-	72897699	7	5	14	1	0	1	0	1	0	0	0	0	10673	1103	39	0	83	0	NPFFR2	4	72897699	Frame_Shift_Del	DEL	G	TCGA-05-4405-01A-21D-1855-08	266255	72897699	118256577	243	30991											
ANKRD17	26057	broad.mit.edu	37	chr4	74012897	74012897	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcataaaaatatttgcatTatgacatttttacttaaaca	2	6	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74012897	A	A	74012897	1	1	14	0	1	0	0	0	0	0	0	0	646	1769	61	5		5	ANKRD17	4	74012897	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	1115198	74012897	117141379	244	30992											
CCNG2	901	broad.mit.edu	37	chr4	78081897	78081897	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacctaaacatttgtcttgCattggagtctgttctttttt	6	7	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78081897	T	T	78081897	2	4	14	1	0	0	0	0	0	0	0	1	2954	718	25	4		4	CCNG2	4	78081897	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	4069000	78081897	113072379	245	30993											
ANXA3	306	broad.mit.edu	37	chr4	79512740	79512740	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacattagttccgaaacatCtggtgacttccggaaagctc	9	10	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79512740	G	G	79512740	3	3	14	1	0	0	0	0	1	0	0	0	719	913	32	4	468	4	ANXA3	4	79512740	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1430843	79512740	111641536	246	30994											
SEC31A	22872	broad.mit.edu	37	chr4	83799966	83799966	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttccttgtctccagctaTaattttagaaggatcataga	6	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83799966	A	A	83799966	3	1	14	1	0	0	0	0	1	0	0	0	14111	1406	49	5	3439	5	SEC31A	4	83799966	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	4287226	83799966	107354310	247	30995											
GRID2	2895	broad.mit.edu	37	chr4	94343975	94343975	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtaagccgaagaaataCcagggcttctccattgatgt	11	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94343975	A	A	94343975	4	1	14	1	0	0	0	0	0	1	0	0	6838	518	18	3	1439	3	GRID2	4	94343975	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	10544009	94343975	96810301	248	30996											
GRID2	2895	broad.mit.edu	37	chr4	94690490	94690490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccctggacataaagagCtttgcaggggtcttttgtat	13	8	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94690490	A	A	94690490	3	1	14	1	0	0	0	0	1	0	0	0	6838	796	28	3	2548	3	GRID2	4	94690490	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	346515	94690490	96463786	249	30997											
SMARCAD1	56916	broad.mit.edu	37	chr4	95202786	95202786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaataactcatttattAttattgttaggattttaatt	3	2	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95202786	G	G	95202786	1	3	14	0	1	0	0	0	0	0	0	0	14886	464	16	5		5	SMARCAD1	4	95202786	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	512296	95202786	95951490	250	30998											
ANK2	287	broad.mit.edu	37	chr4	114176923	114176923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactacacatggctgcccaGggagaccacgtggaatgtgt	12	12	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114176923	T	T	114176923	3	4	14	1	0	0	0	0	1	0	0	0	621	991	35	2	1090	2	ANK2	4	114176923	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	18974137	114176923	76977353	251	30999											
KIAA1109	84162	broad.mit.edu	37	chr4	123274259	123274259	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgggccctttttcatttaGaagaaccaaatattgctttt	6	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123274259	C	C	123274259	3	2	14	1	0	0	0	0	1	0	0	0	8278	943	33	4	14364	4	KIAA1109	4	123274259	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	9097336	123274259	67880017	252	31000											
KIAA1109	84162	broad.mit.edu	37	chr4	123275152	123275152	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaatggttcaattatgTtacagctacaaggaatgaag	10	4	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123275152	C	C	123275152	3	2	14	1	0	0	0	0	1	0	0	0	8278	1725	60	5	14603	5	KIAA1109	4	123275152	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	893	123275152	67879124	253	31001											
FAT4	79633	broad.mit.edu	37	chr4	126241342	126241342	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaagaaagacagtttgCtatagacagtacctctggtc	9	7	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126241342	G	G	126241342	3	3	14	1	0	0	0	0	1	0	0	0	5749	797	28	4	3778	4	FAT4	4	126241342	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2966190	126241342	64912934	254	31002											
UCP1	7350	broad.mit.edu	37	chr4	141489823	141489823	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaagcacgccgctattcCagctgagaagagctggaccc	11	15	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141489823	A	A	141489823	4	1	14	1	0	0	0	0	0	1	0	0	17056	603	21	2	884	2	UCP1	4	141489823	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	15248481	141489823	49664453	255	31003											
GYPA	2993	broad.mit.edu	37	chr4	144918640	144918640	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactcagaggaataaaccctCctagagctgttcacactggt	8	11	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144918640	A	A	144918640	1	1	14	0	1	0	0	0	0	0	0	0	6973	870	30	3		3	GYPA	4	144918640	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3428817	144918640	46235636	256	31004											
KIAA0922	23240	broad.mit.edu	37	chr4	154523459	154523459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attgtcatcagttttccctgGacccaaacacatcccgcgat	6	14	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154523459	T	T	154523459	3	4	14	1	0	0	0	0	1	0	0	0	8271	1174	41	3	2508	3	KIAA0922	4	154523459	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	9604819	154523459	36630817	257	31005											
DCHS2	54798	broad.mit.edu	37	chr4	155219801	155219801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgctcccggtccaaagcacGagtggttgagagttctcctg	12	11	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155219801	T	T	155219801	3	4	14	1	0	0	0	0	1	0	0	0	4321	1058	37	3	4482	3	DCHS2	4	155219801	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	696342	155219801	35934475	258	31006											
FGG	2266	broad.mit.edu	37	chr4	155527940	155527940	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgttcagcacagttgcctTcaaacttatcattgtcattg	6	11	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155527940	A	A	155527940	3	1	14	1	0	0	0	0	1	0	0	0	5927	1783	62	5	342	5	FGG	4	155527940	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	308139	155527940	35626336	259	31007											
GRIA2	2891	broad.mit.edu	37	chr4	158238855	158238855	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggtaccactacatcattGcaaatctggtaggtgaatta	9	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158238855	A	A	158238855	3	1	14	1	0	0	0	0	1	0	0	0	6834	1319	46	4	730	4	GRIA2	4	158238855	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2710915	158238855	32915421	260	31008											
SPOCK3	50859	broad.mit.edu	37	chr4	167675580	167675580	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaatgagcatagtgtaCtgttttattttcttaaaaaa	6	3	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167675580	G	G	167675580	1	3	14	0	1	0	0	0	0	0	0	0	15199	580	20	4		4	SPOCK3	4	167675580	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	9436725	167675580	23478696	261	31009											
DDX60L	91351	broad.mit.edu	37	chr4	169300989	169300989	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgacaacacctataaaAgaagagtactttaatttatc	5	8	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169300989	G	G	169300989	1	3	14	0	1	0	0	0	0	0	0	0	4412	87	3	5		5	DDX60L	4	169300989	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1625409	169300989	21853287	262	31010											
PALLD	23022	broad.mit.edu	37	chr4	169837113	169837113	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggagcgattcttcagacctCacttcttgcaggctcctgga	10	12	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169837113	T	T	169837113	3	4	14	1	0	0	0	0	1	0	0	0	11501	826	29	4	3354	4	PALLD	4	169837113	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	536124	169837113	21317163	263	31011											
SNX25	83891	broad.mit.edu	37	chr4	186231802	186231802	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaaggtaaagaaactgcGgcaatgaaagctgatctcct	9	8	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186231802	T	T	186231802	2	4	14	1	0	0	0	0	0	0	0	1	15010	1103	39	1		1	SNX25	4	186231802	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	16394689	186231802	4922474	264	31012											
FAT1	2195	broad.mit.edu	37	chr4	187524791	187524791	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgtgacttgtctgataTgcactgtgatgtcggccacc	11	11	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187524791	C	C	187524791	3	2	14	1	0	0	0	0	1	0	0	0	5746	1464	51	5	2913	5	FAT1	4	187524791	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1292989	187524791	3629485	265	31013											
FAT1	2195	broad.mit.edu	37	chr4	187557736	187557736	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagtactacaatcttaactCactgaaagaatatcatattc	3	9	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187557736	G	G	187557736	1	3	14	0	1	0	0	0	0	0	0	0	5746	841	29	4		4	FAT1	4	187557736	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	32945	187557736	3596540	266	31014											
NKD2	85409	broad.mit.edu	37	chr5	1037955	1037955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaaagcaggagccccagGgcagggcctcgcacctccag	13	15	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1037955	T	T	1037955	3	4	14	1	0	0	0	0	1	0	0	0	10537	1232	43	2	861	2	NKD2	5	1037955	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08		1037955	179877305	267	31015											
TERT	7015	broad.mit.edu	37	chr5	1278556	1278557	+	Intron	INS	-	CA	CA													caccatggacacacacgtgcINScacacacacacacaccacaa					rs150656025	by1000genomes	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	1278557	CA	CA	1278556	6	5	14	0	1	1	1	0	0	0	0	0	15886	754	26	0		0	TERT	5	1278556	Intron	INS	-	TCGA-05-4405-01A-21D-1855-08	240601	1278556	179636704	268	31016											
NDUFS6	4726	broad.mit.edu	37	chr5	1816034	1816034	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcaccaccactagagcGtgtggcacgccgggggtccc	14	15	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1816034	T	T	1816034	1	4	14	0	1	0	0	0	0	0	0	0	10391	1160	40	3		3	NDUFS6	5	1816034	3'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	537478	1816034	179099226	269	31017											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239672	5239672	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaactgatcaccagaacacGtcttcacccagttccaaatg	6	14	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5239672	A	A	5239672	1	1	14	0	1	0	0	0	0	0	0	0	261	1160	40	4		4	ADAMTS16	5	5239672	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3423638	5239672	175675588	270	31018											
MTRR	4552	broad.mit.edu	37	chr5	7873741	7873741	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgatcatataggttttgtCtttcttatgtaaatattatg	7	3	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7873741	G	G	7873741	1	3	14	0	1	0	0	0	0	0	0	0	10055	928	32	4		4	MTRR	5	7873741	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2634069	7873741	173041519	271	31019											
DNAH5	1767	broad.mit.edu	37	chr5	13820510	13820510	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcccagccccactgggCcccagagtcatcatcccatg	8	18	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13820510	G	G	13820510	2	3	14	1	0	0	0	0	0	0	0	1	4644	726	26	4		4	DNAH5	5	13820510	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	5946769	13820510	167094750	272	31020											
TRIO	7204	broad.mit.edu	37	chr5	14482705	14482705	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaggggaaaatcgttgcCcagggtaaactgctcttgca	11	8	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14482705	T	T	14482705	2	4	14	1	0	0	0	0	0	0	0	1	16677	610	22	4		4	TRIO	5	14482705	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	662195	14482705	166432555	273	31021											
PRDM9	56979	broad.mit.edu	37	chr5	23510114	23510114	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacacagaagattctgatgaAgaatggacccctaggcagca	11	9	1	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23510114	T	T	23510114	3	4	14	1	0	0	0	0	1	0	0	0	12569	69	3	5	289	5	PRDM9	5	23510114	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	9027409	23510114	157405146	274	31022											
CDH10	1008	broad.mit.edu	37	chr5	24487878	24487878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtctccttcagtagtaCctgattctaatgaactcaga	7	9	4	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24487878	A	A	24487878	3	1	14	1	0	0	0	0	1	0	0	0	3126	507	18	3	109	3	CDH10	5	24487878	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	977764	24487878	156427382	275	31023											
CDH10	1008	broad.mit.edu	37	chr5	24498638	24498638	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgggattgtctggaaaagGggaagaaaaatattgtttag	13	1	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24498638	A	A	24498638	1	1	14	0	1	0	0	0	0	0	0	0	3126	1247	43	4		4	CDH10	5	24498638	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	10760	24498638	156416622	276	31024											
CDH6	1004	broad.mit.edu	37	chr5	31299613	31299613	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacatggatcgagaaaacaGggagcagtaccaagtggtga	13	7	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31299613	A	A	31299613	3	1	14	1	0	0	0	0	1	0	0	0	3144	1000	35	4	700	4	CDH6	5	31299613	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	6800975	31299613	149615647	277	31025											
NPR3	4883	broad.mit.edu	37	chr5	32774719	32774719	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgccatggctaacagaccTgaagtctaacttgttaacgc	8	11	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32774719	A	A	32774719	1	1	14	0	1	0	0	0	0	0	0	0	10691	1595	55	5		5	NPR3	5	32774719	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	1475106	32774719	148140541	278	31026											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658393	33658393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcctgaaaggtgagacagGcccagggtctcgcaggggcg	16	10	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33658393	T	T	33658393	2	4	14	1	0	0	0	0	0	0	0	1	257	1190	42	3		3	ADAMTS12	5	33658393	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	883674	33658393	147256867	279	31027											
RXFP3	51289	broad.mit.edu	37	chr5	33937505	33937505	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccaaggcgctgtgtgtgtgGatctgggctttggccgcgct	17	10	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33937505	C	C	33937505	3	2	14	1	0	0	0	0	1	0	0	0	13872	1183	41	4	662	4	RXFP3	5	33937505	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	279112	33937505	146977755	280	31028											
SLC45A2	51151	broad.mit.edu	37	chr5	33964062	33964062	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtacccaacagtcttcCcagctccagatgggcccagt	8	15	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33964062	A	A	33964062	4	1	14	1	0	0	0	0	0	1	0	0	14755	632	22	2	1005	2	SLC45A2	5	33964062	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	26557	33964062	146951198	281	31029											
RANBP3L	202151	broad.mit.edu	37	chr5	36251594	36251594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaatatgctgtatcttggGcactggcctgcatgaggaac	11	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36251594	T	T	36251594	3	4	14	1	0	0	0	0	1	0	0	0	13138	1203	42	3	230	3	RANBP3L	5	36251594	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2287532	36251594	144663666	282	31030											
RANBP3L	202151	broad.mit.edu	37	chr5	36271474	36271474	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgacatttcttacatcatCtaaaaatatttgaagacttt	3	7	4	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36271474	T	T	36271474	1	4	14	0	1	0	0	0	0	0	0	0	13138	928	32	4		4	RANBP3L	5	36271474	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	19880	36271474	144643786	283	31031											
MAP1B	4131	broad.mit.edu	37	chr5	71491553	71491553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattaagaaggaaggcaagGccgcagaggctgtcgctgca	14	9	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71491553	T	T	71491553	3	4	14	1	0	0	0	0	1	0	0	0	9320	1203	42	3	2389	3	MAP1B	5	71491553	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	35220079	71491553	109423707	284	31032											
SV2C	22987	broad.mit.edu	37	chr5	75597285	75597285	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatccatgatgataggcAtgctgtgtctgtacaatgga	12	6	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75597285	T	T	75597285	3	4	14	1	0	0	0	0	1	0	0	0	15537	217	8	5	1957	5	SV2C	5	75597285	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	4105732	75597285	105317975	285	31033											
RGMB	285704	broad.mit.edu	37	chr5	98128880	98128880	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggccgcctttgtggatgGcaccaccagtggtggggaca	16	12	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98128880	A	A	98128880	3	1	14	1	0	0	0	0	1	0	0	0	13389	1203	42	4	874	4	RGMB	5	98128880	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	22531595	98128880	82786380	286	31034											
PRRC1	133619	broad.mit.edu	37	chr5	126887380	126887380	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatgtattataagtaatatCaatttcatctttccacaggc	4	7	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126887380	G	G	126887380	1	3	14	0	1	0	0	0	0	0	0	0	12710	841	29	4		4	PRRC1	5	126887380	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	28758500	126887380	54027880	287	31035											
FBN2	2201	broad.mit.edu	37	chr5	127681130	127681130	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacagcgtctcgtattcctTggtgccaggtttggggcact	13	11	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127681130	C	C	127681130	3	2	14	1	0	0	0	0	1	0	0	0	5760	1821	63	5	5770	5	FBN2	5	127681130	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	793750	127681130	53234130	288	31036											
VDAC1	7416	broad.mit.edu	37	chr5	133316688	133316688	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagatcagaagctaactcAccttgaaatgcaagttgtct	7	8	3	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133316688	C	C	133316688	1	2	14	0	1	0	0	0	0	0	0	0	17273	174	6	5		5	VDAC1	5	133316688	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	5635558	133316688	47598572	289	31037											
PCDHB6	56130	broad.mit.edu	37	chr5	140531776	140531776	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttgtcaaggacaatggCgagcctccgcgctcggccac	13	14	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140531776	A	A	140531776	2	1	14	1	0	0	0	0	0	0	0	1	11640	755	27	3		3	PCDHB6	5	140531776	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	7215088	140531776	40383484	290	31038											
PCDHB16	57717	broad.mit.edu	37	chr5	140562573	140562573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaaaataccggaaaacagtCctctaggaactgagttccct	7	10	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140562573	A	A	140562573	3	1	14	1	0	0	0	0	1	0	0	0	11635	855	30	3	441	3	PCDHB16	5	140562573	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	30797	140562573	40352687	291	31039											
PCDHB12	56124	broad.mit.edu	37	chr5	140589769	140589769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgacttggggacccccagGctaaaaaccgagcacaacat	9	14	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140589769	T	T	140589769	3	4	14	1	0	0	0	0	1	0	0	0	11631	1194	42	3	1292	3	PCDHB12	5	140589769	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	27196	140589769	40325491	292	31040											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711266	140711266	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtactgatcaaagttttgGatgtaaatgataatgcccca	9	6	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140711266	A	A	140711266	3	1	14	1	0	0	0	0	1	0	0	0	11644	1174	41	4	1017	4	PCDHGA1	5	140711266	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	121497	140711266	40203994	293	31041											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730903	140730903	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagaggattcagaccttgGaactgtaatagccctcataa	8	10	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140730903	T	T	140730903	3	4	14	1	0	0	0	0	1	0	0	0	11656	1174	41	3	1078	3	PCDHGB1	5	140730903	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	19637	140730903	40184357	294	31042											
SPINK5	11005	broad.mit.edu	37	chr5	147493975	147493975	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaatggaaaacttttctgCacaagagaaaatgatcctgt	7	7	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147493975	A	A	147493975	4	1	14	1	0	0	0	0	0	1	0	0	15180	718	25	3	2020	3	SPINK5	5	147493975	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	6763072	147493975	33421285	295	31043											
CSF1R	1436	broad.mit.edu	37	chr5	149435008	149435008	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcccacttgacaacactGcaacagcagctactcttacc	7	15	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149435008	A	A	149435008	1	1	14	0	1	0	0	0	0	0	0	0	3966	1334	46	4		4	CSF1R	5	149435008	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1941033	149435008	31480252	296	31044											
GM2A	2760	broad.mit.edu	37	chr5	150948569	150948569	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaaatggtttctactgCtgtgattcttaactggaggt	11	5	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150948569	T	T	150948569	1	4	14	0	1	0	0	0	0	0	0	0	6548	812	28	4		4	GM2A	5	150948569	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1513561	150948569	29966691	297	31045											
SPARC	6678	broad.mit.edu	37	chr5	151051154	151051154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcaaactcgccaatggGggctgggcagctggtggggt	16	10	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151051154	T	T	151051154	3	4	14	1	0	0	0	0	1	0	0	0	15111	1232	43	2	625	2	SPARC	5	151051154	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	102585	151051154	29864106	298	31046											
DOCK2	1794	broad.mit.edu	37	chr5	169509853	169509853	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcccagactcgctgtccacGgacctgtgagctgctgctga	11	14	0	3	rs140198889	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169509853	A	A	169509853	2	1	14	1	0	0	0	0	0	0	0	1	4727	1103	39	4		4	DOCK2	5	169509853	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	18458699	169509853	11405407	299	31047											
DRD1	1812	broad.mit.edu	37	chr5	174870192	174870192	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatttccaggagtcctccCcaccaggcagcactttgcac	8	16	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174870192	A	A	174870192	1	1	14	0	1	0	0	0	0	0	0	0	4796	638	22	2		2	DRD1	5	174870192	5'UTR	SNP	C	TCGA-05-4405-01A-21D-1855-08	5360339	174870192	6045068	300	31048											
FGFR4	2264	broad.mit.edu	37	chr5	176520590	176520591	+	Intron	DNP	GG	TT	TT													ggggcagggacgcgggcgccGggttgcagcccgccctccgc							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	176520591	TT	TT	176520590	1	4	14	0	1	0	0	0	0	0	0	0	5925	1131	39	1		1	FGFR4	5	176520590	Intron	DNP	GG	TCGA-05-4405-01A-21D-1855-08	1650398	176520590	4394670	301	31049											
DBN1	1627	broad.mit.edu	37	chr5	176894942	176894942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggtgtcagagggccgacGgggagggcgactgctctggg	21	9	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176894942	T	T	176894942	1	4	14	0	1	0	0	0	0	0	0	0	4285	1131	39	1		1	DBN1	5	176894942	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	374352	176894942	4020318	302	31050											
TMED9	54732	broad.mit.edu	37	chr5	177019411	177019411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcataggtgcgggggcgGggaggaaggggcgagtttgg	24	4	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177019411	T	T	177019411	1	4	14	0	1	0	0	0	0	0	0	0	16135	1247	43	2		2	TMED9	5	177019411	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	124469	177019411	3895849	303	31051											
TBC1D7	51256	broad.mit.edu	37	chr6	13325494	13325494	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttttaaaactcaaagaaTagttaagacatttcttcagg	5	5	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13325494	A	A	13325494	1	1	14	0	1	0	0	0	0	0	0	0	15746	1421	49	5		5	TBC1D7	6	13325494	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08		13325494	157789573	304	31052											
GFOD1	54438	broad.mit.edu	37	chr6	13365946	13365946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggaccatgtccgagcgCgcgtccctgggtcagatctt	14	13	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13365946	A	A	13365946	1	1	14	0	1	0	0	0	0	0	0	0	6407	783	27	3		3	GFOD1	6	13365946	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	40452	13365946	157749121	305	31053											
NUP153	9972	broad.mit.edu	37	chr6	17669290	17669290	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaaaacactattagaataGatggggagttatgaaaaata	8	2	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17669290	C	C	17669290	1	2	14	0	1	0	0	0	0	0	0	0	10850	957	33	4		4	NUP153	6	17669290	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4303344	17669290	153445777	306	31054											
KIF13A	63971	broad.mit.edu	37	chr6	17837141	17837141	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagctgctctctcagtttctCgacttcctcccgcagttctc	7	16	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17837141	T	T	17837141	3	4	14	1	0	0	0	0	1	0	0	0	8344	893	31	4	4435	4	KIF13A	6	17837141	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	167851	17837141	153277926	307	31055											
ZNF187	7741	broad.mit.edu	37	chr6	28240024	28240024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctaaggagctccaggccCgggtgcaggagcatcaccca	13	14	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28240024	T	T	28240024	3	4	14	1	0	0	0	0	1	0	0	0	17879	639	23	4	329	4	ZNF187	6	28240024	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	10402883	28240024	142875043	308	31056											
CSNK2B	1460	broad.mit.edu	37	chr6	31636452	31636452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggcctctctgctcctaCctgcctccttctgagcagta	9	15	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31636452	A	A	31636452	1	1	14	0	1	0	0	0	0	0	0	0	3993	522	18	3		3	CSNK2B	6	31636452	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3396428	31636452	139478615	309	31057											
HLA-DRA	3122	broad.mit.edu	37	chr6	32411567	32411567	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccctctcccagagactacAgagaacgtggtgtgtgccct	11	13	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32411567	T	T	32411567	2	4	14	1	0	0	0	0	0	0	0	1	7274	175	7	5		5	HLA-DRA	6	32411567	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	775115	32411567	138703500	310	31058											
C6orf125	84300	broad.mit.edu	37	chr6	33668479	33668479	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtctccaggaggcagctcCaactataatgtacccgtgag	10	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33668479	T	T	33668479	1	4	14	0	1	0	0	0	0	0	0	0	2348	609	21	4		4	C6orf125	6	33668479	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1256912	33668479	137446588	311	31059											
ZNF76	7629	broad.mit.edu	37	chr6	35260373	35260373	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccaggctgcgggaaacGcttcaccgagtactcgagct	14	12	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35260373	A	A	35260373	3	1	14	1	0	0	0	0	1	0	0	0	18264	1087	38	4	1008	4	ZNF76	6	35260373	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1591894	35260373	135854694	312	31060											
LRFN2	57497	broad.mit.edu	37	chr6	40399507	40399507	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgcagctggtacatcttcAcccggggtgctgacttgctg	12	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40399507	C	C	40399507	3	2	14	1	0	0	0	0	1	0	0	0	9025	159	6	5	1031	5	LRFN2	6	40399507	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	5139134	40399507	130715560	313	31061											
MEP1A	4224	broad.mit.edu	37	chr6	46794188	46794188	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacactgactgggcccatcaGgacagtgctcaggctggaga	14	11	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46794188	A	A	46794188	2	1	14	1	0	0	0	0	0	0	0	1	9568	991	35	4		4	MEP1A	6	46794188	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	6394681	46794188	124320879	314	31062											
TFAP2D	83741	broad.mit.edu	37	chr6	50718973	50718973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagccaagatagatcaccaCtgggatcctccagacccact	8	14	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50718973	A	A	50718973	3	1	14	1	0	0	0	0	1	0	0	0	15913	564	20	3	1101	3	TFAP2D	6	50718973	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3924785	50718973	120396094	315	31063											
GSTA5	221357	broad.mit.edu	37	chr6	52713654	52713654	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catactcagtcccaggtcccAgatacaagatcccaagatgg	8	13	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52713654	T	T	52713654	1	4	14	0	1	0	0	0	0	0	0	0	6900	203	7	5		5	GSTA5	6	52713654	5'Flank	SNP	A	TCGA-05-4405-01A-21D-1855-08	1994681	52713654	118401413	316	31064											
EYS	346007	broad.mit.edu	37	chr6	66112531	66112531	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatatttttacaaagTattatggatatttcaaaggt	5	2	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66112531	A	A	66112531	1	1	14	0	1	0	0	0	0	0	0	0	5375	1653	57	5		5	EYS	6	66112531	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	13398877	66112531	105002536	317	31065											
BAI3	577	broad.mit.edu	37	chr6	69943124	69943124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgcattttcttctttacGgatttggctatcaggcgtat	8	8	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69943124	T	T	69943124	1	4	14	0	1	0	0	0	0	0	0	0	1305	1131	39	1		1	BAI3	6	69943124	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3830593	69943124	101171943	318	31066											
BAI3	577	broad.mit.edu	37	chr6	70049174	70049174	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgggggtttggctatgGcctggggtgtgatgtatagc	18	4	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70049174	C	C	70049174	1	2	14	0	1	0	0	0	0	0	0	0	1305	1218	42	4		4	BAI3	6	70049174	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	106050	70049174	101065893	319	31067											
DDX43	55510	broad.mit.edu	37	chr6	74107367	74107367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtaaattttcaacttaCtaatttcaacttataacaat	3	6	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74107367	A	A	74107367	1	1	14	0	1	0	0	0	0	0	0	0	4396	580	20	3		3	DDX43	6	74107367	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	4058193	74107367	97007700	320	31068											
COL12A1	1303	broad.mit.edu	37	chr6	75898142	75898142	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagcacacctgggagatgatCtcattctgaatatccacaat	8	10	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75898142	A	A	75898142	3	1	14	1	0	0	0	0	1	0	0	0	3701	912	32	3	8494	3	COL12A1	6	75898142	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1790775	75898142	95216925	321	31069											
UBE2CBP	90025	broad.mit.edu	37	chr6	83748197	83748197	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattactttggtatttgccTttggttcctgtagaacagaa	8	6	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83748197	A	A	83748197	3	1	14	1	0	0	0	0	1	0	0	0	16973	1609	56	5	588	5	UBE2CBP	6	83748197	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	7850055	83748197	87366870	322	31070											
KIAA1009	22832	broad.mit.edu	37	chr6	84895174	84895174	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagatctgtaagtctgtacaCaacaaacaaaagctctttag	7	8	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84895174	G	G	84895174	1	3	14	0	1	0	0	0	0	0	0	0	8273	493	17	4		4	KIAA1009	6	84895174	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1146977	84895174	86219893	323	31071											
GABRR2	2570	broad.mit.edu	37	chr6	89967797	89967797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacattgctactcagaacCacagaaagatagaactagaa	7	10	1	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89967797	A	A	89967797	1	1	14	0	1	0	0	0	0	0	0	0	6237	609	21	2		2	GABRR2	6	89967797	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	5072623	89967797	81147270	324	31072											
UBE2J1	51465	broad.mit.edu	37	chr6	90039587	90039587	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgactctgctgctgggcCcggcgctgtcgagggctcat	14	14	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90039587	A	A	90039587	2	1	14	1	0	0	0	0	0	0	0	1	16986	610	22	2		2	UBE2J1	6	90039587	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	71790	90039587	81075480	325	31073											
FUT9	10690	broad.mit.edu	37	chr6	96650972	96650972	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctccaatatatttatgatTttctcttcattcccaccgct	2	12	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96650972	A	A	96650972	1	1	14	0	1	0	0	0	0	0	0	0	6171	1856	64	5		5	FUT9	6	96650972	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	6611385	96650972	74464095	326	31074											
C6orf167	253714	broad.mit.edu	37	chr6	97627259	97627259	+	Intron	DEL	C	-	-													tccatagatacccccatcctCcccaaaaaacgtacacttac							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97627259	-	-	97627259	6	5	14	0	1	1	0	1	0	0	0	0	2365	870	30	0		0	C6orf167	6	97627259	Intron	DEL	C	TCGA-05-4405-01A-21D-1855-08	976287	97627259	73487808	327	31075											
POPDC3	64208	broad.mit.edu	37	chr6	105609673	105609673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacccatgaaacctactaCaaataaaatactggcaagat	5	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105609673	A	A	105609673	3	1	14	1	0	0	0	0	1	0	0	0	12351	478	17	3	775	3	POPDC3	6	105609673	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	7982414	105609673	65505394	328	31076											
FYN	2534	broad.mit.edu	37	chr6	111983191	111983191	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagtgggcaccccggggatCcaggccctgaccgccgcact	14	16	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111983191	A	A	111983191	1	1	14	0	1	0	0	0	0	0	0	0	6186	870	30	3		3	FYN	6	111983191	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	6373518	111983191	59131876	329	31077											
ZUFSP	221302	broad.mit.edu	37	chr6	116988239	116988239	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacacatttcatcataattCacacctgacaacttgcaaaa	2	11	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116988239	G	G	116988239	2	3	14	1	0	0	0	0	0	0	0	1	18375	813	29	4		4	ZUFSP	6	116988239	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	5005048	116988239	54126828	330	31078											
DCBLD1	285761	broad.mit.edu	37	chr6	117861841	117861841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctataggtgtttcaggGtaactctaactttcgggacc	9	10	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117861841	T	T	117861841	3	4	14	1	0	0	0	0	1	0	0	0	4313	1261	44	3	1150	3	DCBLD1	6	117861841	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	873602	117861841	53253226	331	31079											
LAMA2	3908	broad.mit.edu	37	chr6	129635775	129635775	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taactttgccgttataaactCtgagggtctcttgtctttcc	7	10	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129635775	A	A	129635775	1	1	14	0	1	0	0	0	0	0	0	0	8678	928	32	3		3	LAMA2	6	129635775	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	11773934	129635775	41479292	332	31080											
ENPP1	5167	broad.mit.edu	37	chr6	132211593	132211593	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatcaacaaagaaaagagcCagtttcagacattttaaagt	6	7	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132211593	T	T	132211593	3	4	14	1	0	0	0	0	1	0	0	0	5171	594	21	4	2818	4	ENPP1	6	132211593	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2575818	132211593	38903474	333	31081											
BCLAF1	9774	broad.mit.edu	37	chr6	136599628	136599628	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctagaagatctatatgaccGgcgagatctgcttctggatc	10	10	3	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136599628	A	A	136599628	3	1	14	1	0	0	0	0	1	0	0	0	1388	1115	39	4	2411	4	BCLAF1	6	136599628	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	4388035	136599628	34515439	334	31082											
TNFAIP3	7128	broad.mit.edu	37	chr6	138199923	138199923	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcctatgagcccttggcGtggaaccctgaggagtccac	13	12	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138199923	T	T	138199923	2	4	14	1	0	0	0	0	0	0	0	1	16397	1132	40	3		3	TNFAIP3	6	138199923	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	1600295	138199923	32915144	335	31083											
ECT2L	345930	broad.mit.edu	37	chr6	139167715	139167715	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattcctaccctttattatcAaagaaaaattggcatggagt	6	8	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139167715	G	G	139167715	2	3	14	1	0	0	0	0	0	0	0	1	4942	117	5	5		5	ECT2L	6	139167715	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	967792	139167715	31947352	336	31084											
SYNE1	23345	broad.mit.edu	37	chr6	152470489	152470489	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaatgtaggacaaagctaGgacttgaactcaggtgctcc	11	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152470489	A	A	152470489	1	1	14	0	1	0	0	0	0	0	0	0	15564	1015	35	4		4	SYNE1	6	152470489	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	13302774	152470489	18644578	337	31085											
PNLDC1	154197	broad.mit.edu	37	chr6	160221592	160221592	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctttgagcagcaagtacactCcgagccccacgtcccttgtt	8	15	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160221592	G	G	160221592	1	3	14	0	1	0	0	0	0	0	0	0	12243	870	30	4		4	PNLDC1	6	160221592	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	7751103	160221592	10893475	338	31086											
IGF2R	3482	broad.mit.edu	37	chr6	160494947	160494947	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccactaaatcccatgcaCggagtgccctgtcctgccgg	10	16	0	0	rs140485195		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160494947	T	T	160494947	2	4	14	1	0	0	0	0	0	0	0	1	7646	535	19	4		4	IGF2R	6	160494947	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	273355	160494947	10620120	339	31087											
PDE10A	10846	broad.mit.edu	37	chr6	165827065	165827065	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catctgttttagagaaggcaCtgccactgattttgttgacc	9	9	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165827065	G	G	165827065	3	3	14	1	0	0	0	0	1	0	0	0	11724	565	20	4	1207	4	PDE10A	6	165827065	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	5332118	165827065	5288002	340	31088											
CARD11	84433	broad.mit.edu	37	chr7	2969504	2969504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcattctgcagggggagaGggtggtggggatgagctctg	21	5	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2969504	T	T	2969504	1	4	14	0	1	0	0	0	0	0	0	0	2671	1015	35	2		2	CARD11	7	2969504	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08		2969504	156169159	341	31089											
RADIL	55698	broad.mit.edu	37	chr7	4845039	4845040	+	Intron	DEL	GC	-	-													caggttggggatggggcgggGcgggggggtcctctgggtgg					rs148730991	by1000genomes	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4845040	-	-	4845039	6	5	14	0	1	1	0	1	0	0	0	0	13105	1218	42	0		0	RADIL	7	4845039	Intron	DEL	GC	TCGA-05-4405-01A-21D-1855-08	1875535	4845039	154293624	342	31090											
DAGLB	221955	broad.mit.edu	37	chr7	6523595	6523595	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgggccttcccccgccgctCaccggcgcaggagcgcgtct	13	20	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6523595	A	A	6523595	1	1	14	0	1	0	0	0	0	0	0	0	4260	841	29	3		3	DAGLB	7	6523595	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1678556	6523595	152615068	343	31091											
RSPH10B2	728194	broad.mit.edu	37	chr7	6820616	6820616	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctcactcctgcaatcccAgcactttgggaggccgaggc	12	14	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6820616	T	T	6820616	1	4	14	0	1	0	0	0	0	0	0	0	13815	203	7	5		5	RSPH10B2	7	6820616	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	297021	6820616	152318047	344	31092											
THSD7A	221981	broad.mit.edu	37	chr7	11419041	11419041	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattcctctattatttttaActacaaagaaacatactttt	1	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11419041	G	G	11419041	1	3	14	0	1	0	0	0	0	0	0	0	16002	58	2	5		5	THSD7A	7	11419041	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	4598425	11419041	147719622	345	31093											
DGKB	1607	broad.mit.edu	37	chr7	14188795	14188795	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtccttttgacgagggaGcagaataaaccggtttttgg	12	7	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14188795	T	T	14188795	4	4	14	1	0	0	0	0	0	1	0	0	4506	963	34	3	42	3	DGKB	7	14188795	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2769754	14188795	144949868	346	31094											
TMEM195	392636	broad.mit.edu	37	chr7	15470800	15470800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttccattttcagttatGcatgctgctctgttgagtga	8	9	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15470800	T	T	15470800	1	4	14	0	1	0	0	0	0	0	0	0	16240	1334	46	3		3	TMEM195	7	15470800	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1282005	15470800	143667863	347	31095											
BZW2	28969	broad.mit.edu	37	chr7	16720844	16720844	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctactttgattattttctttCatttgccagaattgatgtgt	6	6	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16720844	T	T	16720844	1	4	14	0	1	0	0	0	0	0	0	0	1589	841	29	4		4	BZW2	7	16720844	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1250044	16720844	142417819	348	31096											
HDAC9	9734	broad.mit.edu	37	chr7	18536024	18536024	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcagctaagaaaagcaCctctcttaaggaaattgctg	8	8	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18536024	T	T	18536024	1	4	14	0	1	0	0	0	0	0	0	0	7081	522	18	4		4	HDAC9	7	18536024	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1815180	18536024	140602639	349	31097											
EVX1	2128	broad.mit.edu	37	chr7	27285494	27285494	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctactgaacctgctccgctCctctccccaggtgtggttcc	9	17	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27285494	T	T	27285494	1	4	14	0	1	0	0	0	0	0	0	0	5336	870	30	4		4	EVX1	7	27285494	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	8749470	27285494	131853169	350	31098											
GGCT	79017	broad.mit.edu	37	chr7	30538724	30538724	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatatataaatttaccacaTcaaaagtaagcttagcattt	4	6	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30538724	A	A	30538724	1	1	14	0	1	0	0	0	0	0	0	0	6419	1450	50	5		5	GGCT	7	30538724	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	3253230	30538724	128599939	351	31099											
FAM188B	84182	broad.mit.edu	37	chr7	30876532	30876532	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtagaagaaaatgtgaAccgagagtcaggaaaactgc	12	5	1	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30876532	T	T	30876532	1	4	14	0	1	0	0	0	0	0	0	0	5561	58	2	5		5	FAM188B	7	30876532	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	337808	30876532	128262131	352	31100											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31120330	31120330	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggagatcccaggctccGgctgctgggattggggtggg	18	10	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31120330	A	A	31120330	1	1	14	0	1	0	0	0	0	0	0	0	303	1131	39	4		4	ADCYAP1R1	7	31120330	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	243798	31120330	128018333	353	31101											
FKBP9	11328	broad.mit.edu	37	chr7	33014277	33014277	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgtgggaaaaggacagctGatcacagggatggaccaggc	15	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33014277	A	A	33014277	2	1	14	1	0	0	0	0	0	0	0	1	5972	1277	45	4		4	FKBP9	7	33014277	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	1893947	33014277	126124386	354	31102											
TBX20	57057	broad.mit.edu	37	chr7	35271187	35271187	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgctatctattttcagcttCgttatctggagaaagaatgg	9	6	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35271187	T	T	35271187	2	4	14	1	0	0	0	0	0	0	0	1	15778	871	31	4		4	TBX20	7	35271187	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2256910	35271187	123867476	355	31103											
HECW1	23072	broad.mit.edu	37	chr7	43590144	43590144	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagtggcgggtggagcGcggcgtggtacagcagaccg	21	8	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43590144	A	A	43590144	3	1	14	1	0	0	0	0	1	0	0	0	7109	1087	38	4	4447	4	HECW1	7	43590144	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	8318957	43590144	115548519	356	31104											
HECW1	23072	broad.mit.edu	37	chr7	43594285	43594285	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agattactgcagtttgtcacGggaacatccagcgtgcccta	10	11	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43594285	A	A	43594285	2	1	14	1	0	0	0	0	0	0	0	1	7109	1103	39	4		4	HECW1	7	43594285	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	4141	43594285	115544378	357	31105											
TBRG4	9238	broad.mit.edu	37	chr7	45145176	45145176	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcagccagcagctcctgcGagtgctgctcctgtgagagg	14	13	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45145176	T	T	45145176	4	4	14	1	0	0	0	0	0	1	0	0	15771	1059	37	3	1332	3	TBRG4	7	45145176	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1550891	45145176	113993487	358	31106											
ZPBP	11055	broad.mit.edu	37	chr7	49983225	49983225	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaggagaggacagcaacCcatcattttgttgcccaggt	10	11	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49983225	T	T	49983225	1	4	14	0	1	0	0	0	0	0	0	0	18348	638	22	4		4	ZPBP	7	49983225	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	4838049	49983225	109155438	359	31107											
SUMF2	25870	broad.mit.edu	37	chr7	56136148	56136148	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatatatatgcatgtattActggtaactctcttttttct	4	6	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56136148	G	G	56136148	1	3	14	0	1	0	0	0	0	0	0	0	15504	406	14	5		5	SUMF2	7	56136148	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	6152923	56136148	103002515	360	31108											
AUTS2	26053	broad.mit.edu	37	chr7	69900823	69900823	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataacacactgaacaccagaGtcctcccacacacagctgca	5	16	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69900823	C	C	69900823	1	2	14	0	1	0	0	0	0	0	0	0	1230	1044	36	4		4	AUTS2	7	69900823	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	13764675	69900823	89237840	361	31109											
AUTS2	26053	broad.mit.edu	37	chr7	70231185	70231185	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttccctgggccctccgccCtacctgcggaccgagttcca	10	19	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70231185	G	G	70231185	2	3	14	1	0	0	0	0	0	0	0	1	1230	668	24	4		4	AUTS2	7	70231185	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	330362	70231185	88907478	362	31110											
POM121C	100101267	broad.mit.edu	37	chr7	75052311	75052311	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgccttggtgtcagtGgctggtaccatggatggagc	18	7	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75052311	A	A	75052311	2	1	14	1	0	0	0	0	0	0	0	1	12335	1335	47	4		4	POM121C	7	75052311	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	4821126	75052311	84086352	363	31111											
POM121C	100101267	broad.mit.edu	37	chr7	75103857	75103857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgggaaggaaagtgataTttgggggttgggaggtgtta	20	1	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75103857	C	C	75103857	1	2	14	0	1	0	0	0	0	0	0	0	12335	1508	52	5		5	POM121C	7	75103857	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	51546	75103857	84034806	364	31112											
CACNA2D1	781	broad.mit.edu	37	chr7	81620635	81620635	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacgaaaagtaaagccgtagAatttacttataaattttgta	6	4	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81620635	T	T	81620635	1	4	14	0	1	0	0	0	0	0	0	0	2574	261	9	5		5	CACNA2D1	7	81620635	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	6516778	81620635	77518028	365	31113											
SEMA3D	223117	broad.mit.edu	37	chr7	84657650	84657650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattgctggtctcaatgtaCttggaattatcaatgtgcca	8	8	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84657650	A	A	84657650	1	1	14	0	1	0	0	0	0	0	0	0	14140	580	20	3		3	SEMA3D	7	84657650	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3037015	84657650	74481013	366	31114											
CROT	54677	broad.mit.edu	37	chr7	87011309	87011309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatgaaggaagatggaaGgtatgtttgaataaatattt	11	1	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87011309	T	T	87011309	3	4	14	1	0	0	0	0	1	0	0	0	3926	1014	35	2	1184	2	CROT	7	87011309	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2353659	87011309	72127354	367	31115											
SLC25A40	55972	broad.mit.edu	37	chr7	87476206	87476206	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatctagtgacagtaaTatttgaatgagacaaagcca	7	5	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87476206	A	A	87476206	1	1	14	0	1	0	0	0	0	0	0	0	14619	1421	49	5		5	SLC25A40	7	87476206	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	464897	87476206	71662457	368	31116											
KRIT1	889	broad.mit.edu	37	chr7	91854969	91854969	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccactcttgccacagatCctcaaatttaaatcttatta	2	11	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91854969	A	A	91854969	1	1	14	0	1	0	0	0	0	0	0	0	8516	870	30	3		3	KRIT1	7	91854969	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	4378763	91854969	67283694	369	31117											
CCDC132	55610	broad.mit.edu	37	chr7	92979153	92979153	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatatgatacttttagaaaAtaattgttttcatttttgtg	5	3	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92979153	T	T	92979153	1	4	14	0	1	0	0	0	0	0	0	0	2793	116	4	5		5	CCDC132	7	92979153	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1124184	92979153	66159510	370	31118											
CALCR	799	broad.mit.edu	37	chr7	93055955	93055955	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagtcagaaatgatccatgCaaagtgtacgaacatcgttc	8	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93055955	G	G	93055955	1	3	14	0	1	0	0	0	0	0	0	0	2605	725	25	4		4	CALCR	7	93055955	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	76802	93055955	66082708	371	31119											
COL1A2	1278	broad.mit.edu	37	chr7	94054501	94054501	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgctgtgggtagtcctGgagtcaacggtgctcctggt	16	9	1	0	rs72659308		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94054501	T	T	94054501	4	4	14	1	0	0	0	0	0	1	0	0	3710	1349	47	2	2912	2	COL1A2	7	94054501	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	998546	94054501	65084162	372	31120											
COL1A2	1278	broad.mit.edu	37	chr7	94057055	94057055	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcgctcagcaccttctctCagacccaaggactatgaagt	7	15	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94057055	A	A	94057055	2	1	14	1	0	0	0	0	0	0	0	1	3710	813	29	3		3	COL1A2	7	94057055	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2554	94057055	65081608	373	31121											
ASNS	440	broad.mit.edu	37	chr7	97481664	97481664	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccagtaatggctcagccaGtcagcccggcctgggtaatg	12	12	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97481664	A	A	97481664	2	1	14	1	0	0	0	0	0	0	0	1	1052	1020	36	4		4	ASNS	7	97481664	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	3424609	97481664	61656999	374	31122											
LMTK2	22853	broad.mit.edu	37	chr7	97800896	97800896	+	Frame_Shift_Del	DEL	G	-	-													cagcgagcaggagcacatgcGgggggactcacagaccatgc							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97800896	-	-	97800896	7	5	14	1	0	1	0	1	0	0	0	0	8933	1116	39	0	727	0	LMTK2	7	97800896	Frame_Shift_Del	DEL	G	TCGA-05-4405-01A-21D-1855-08	319232	97800896	61337767	375	31123											
TRRAP	8295	broad.mit.edu	37	chr7	98602013	98602013	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttctgatgccaaagccaAcgcattattacatcaagatt	6	9	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98602013	T	T	98602013	3	4	14	1	0	0	0	0	1	0	0	0	16726	43	2	5	10639	5	TRRAP	7	98602013	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	801117	98602013	60536650	376	31124											
PILRB	29990	broad.mit.edu	37	chr7	99956683	99956683	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagtccatcaaggggacCaaactcaccatcacccaggg	9	14	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99956683	T	T	99956683	2	4	14	1	0	0	0	0	0	0	0	1	12021	595	21	4		4	PILRB	7	99956683	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	1354670	99956683	59181980	377	31125											
ZAN	7455	broad.mit.edu	37	chr7	100364781	100364781	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttgtgagcgccaccaaCgagaaccgcggggggatcct	14	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100364781	T	T	100364781	2	4	14	1	0	0	0	0	0	0	0	1	17640	535	19	4		4	ZAN	7	100364781	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	408098	100364781	58773882	378	31126											
ZAN	7455	broad.mit.edu	37	chr7	100386739	100386739	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttattccactctctgcacgGagacatatggagatgactgg	10	10	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100386739	T	T	100386739	1	4	14	0	1	0	0	0	0	0	0	0	17640	1189	41	3		3	ZAN	7	100386739	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	21958	100386739	58751924	379	31127											
SERPINE1	5054	broad.mit.edu	37	chr7	100773778	100773779	+	Frame_Shift_Del	DEL	CA	-	-													aacaaggatgagatcagcacCacagacgcgatcttcgtcca					rs149070955		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100773779	-	-	100773778	7	5	14	1	0	1	0	1	0	0	0	0	14224	581	21	0	354	0	SERPINE1	7	100773778	Frame_Shift_Del	DEL	CA	TCGA-05-4405-01A-21D-1855-08	387039	100773778	58364885	380	31128											
FBXL13	222235	broad.mit.edu	37	chr7	102667818	102667818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattttagtattttccacaCacggcattactatttgaggc	8	8	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102667818	A	A	102667818	1	1	14	0	1	0	0	0	0	0	0	0	5766	493	17	3		3	FBXL13	7	102667818	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1894040	102667818	56470845	381	31129											
RELN	5649	broad.mit.edu	37	chr7	103270309	103270309	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcaacaaatgactaaatGctgaatagactggaagatca	8	6	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103270309	C	C	103270309	1	2	14	0	1	0	0	0	0	0	0	0	13328	1334	46	4		4	RELN	7	103270309	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	602491	103270309	55868354	382	31130											
CDHR3	222256	broad.mit.edu	37	chr7	105662683	105662683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttctctcccaatgctgGttccaatgtcacacgcctgc	6	17	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105662683	T	T	105662683	3	4	14	1	0	0	0	0	1	0	0	0	3150	1261	44	3	1919	3	CDHR3	7	105662683	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2392374	105662683	53475980	383	31131											
NAMPT	10135	broad.mit.edu	37	chr7	105893628	105893628	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaagaaagttagacaagTagaagactaatcatcagaaa	7	4	2	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105893628	C	C	105893628	1	2	14	0	1	0	0	0	0	0	0	0	10243	1653	57	5		5	NAMPT	7	105893628	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	230945	105893628	53245035	384	31132											
LAMB4	22798	broad.mit.edu	37	chr7	107708662	107708662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcagagaagcacctcaCcttgttagtagctatagttc	10	9	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107708662	A	A	107708662	1	1	14	0	1	0	0	0	0	0	0	0	8685	522	18	3		3	LAMB4	7	107708662	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1815034	107708662	51430001	385	31133											
LAMB4	22798	broad.mit.edu	37	chr7	107752392	107752392	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagcatttttgttccccCtggaaaacaccattattaaa	5	9	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107752392	A	A	107752392	5	1	14	1	0	0	0	0	0	0	1	0	8685	695	24	2	5217	2	LAMB4	7	107752392	Splice_Site	SNP	C	TCGA-05-4405-01A-21D-1855-08	43730	107752392	51386271	386	31134											
LAMB4	22798	broad.mit.edu	37	chr7	107756565	107756565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggtgggatgacaggcacCcctgttgcagtcatcttgag	14	9	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107756565	A	A	107756565	3	1	14	1	0	0	0	0	1	0	0	0	8685	623	22	2	5337	2	LAMB4	7	107756565	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	4173	107756565	51382098	387	31135											
MET	4233	broad.mit.edu	37	chr7	116371664	116371664	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatacacactgaaaggtttCttaccagcttgttcatgtct	6	9	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116371664	G	G	116371664	1	3	14	0	1	0	0	0	0	0	0	0	9578	928	32	4		4	MET	7	116371664	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	8615099	116371664	42766999	388	31136											
C7orf58	79974	broad.mit.edu	37	chr7	120704291	120704291	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctttttcattcctttcaGgcaaacagattaccagaaat	4	9	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120704291	T	T	120704291	5	4	14	1	0	0	0	0	0	0	1	0	2430	1014	35	2	554	2	C7orf58	7	120704291	Splice_Site	SNP	G	TCGA-05-4405-01A-21D-1855-08	4332627	120704291	38434372	389	31137											
RBM28	55131	broad.mit.edu	37	chr7	127979269	127979269	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatgcaatgttcattttcTctctcacttaccttaaagct	3	11	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127979269	C	C	127979269	1	2	14	0	1	0	0	0	0	0	0	0	13236	1566	54	5		5	RBM28	7	127979269	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	7274978	127979269	31159394	390	31138											
FLNC	2318	broad.mit.edu	37	chr7	128486327	128486327	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgggggcgcacactccctGattgatgcccctgtggctgg	16	12	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128486327	C	C	128486327	1	2	14	0	1	0	0	0	0	0	0	0	5993	1305	45	4		4	FLNC	7	128486327	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	507058	128486327	30652336	391	31139											
SMO	6608	broad.mit.edu	37	chr7	128851663	128851663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggagcacagaggctgggGgcttctgggactggagtaca	20	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128851663	A	A	128851663	1	1	14	0	1	0	0	0	0	0	0	0	14914	1247	43	4		4	SMO	7	128851663	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	365336	128851663	30287000	392	31140											
CHRM2	1129	broad.mit.edu	37	chr7	136622961	136622961	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcaggttacttctcactcAgggtacctttgttactgaat	8	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136622961	T	T	136622961	1	4	14	0	1	0	0	0	0	0	0	0	3408	203	7	5		5	CHRM2	7	136622961	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	7771298	136622961	22515702	393	31141											
OR6V1	346517	broad.mit.edu	37	chr7	142749461	142749461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatctgagccagccctcCgaatttgtcctcttgggctt	9	13	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142749461	A	A	142749461	2	1	14	1	0	0	0	0	0	0	0	1	11305	639	23	1		1	OR6V1	7	142749461	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	6126500	142749461	16389202	394	31142											
ZYX	7791	broad.mit.edu	37	chr7	143080351	143080351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacctatgcccagcagaGggagaagccccgagtgcagg	13	13	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143080351	T	T	143080351	3	4	14	1	0	0	0	0	1	0	0	0	18383	1000	35	2	973	2	ZYX	7	143080351	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	330890	143080351	16058312	395	31143											
ZYX	7791	broad.mit.edu	37	chr7	143080397	143080397	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcaccccgtgcccccaccGgctcagaaccaaaaccaggt	8	19	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143080397	C	C	143080397	2	2	14	1	0	0	0	0	0	0	0	1	18383	1103	39	4		4	ZYX	7	143080397	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	46	143080397	16058266	396	31144											
OR2A12	346525	broad.mit.edu	37	chr7	143792543	143792543	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagagtgtctgattttgGtgatgatgtgctatgatcgg	13	4	1	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143792543	T	T	143792543	3	4	14	1	0	0	0	0	1	0	0	0	11069	1261	44	3	345	3	OR2A12	7	143792543	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	712146	143792543	15346120	397	31145											
OR2A14	135941	broad.mit.edu	37	chr7	143826593	143826593	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacatctgccaccccttaCgttacaatagcctcatgagc	7	15	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143826593	T	T	143826593	3	4	14	1	0	0	0	0	1	0	0	0	11070	536	19	4	390	4	OR2A14	7	143826593	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	34050	143826593	15312070	398	31146											
ARHGEF5	7984	broad.mit.edu	37	chr7	144077006	144077006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggctggctggagggcGtgaggctctcagacggggag	19	10	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144077006	T	T	144077006	3	4	14	1	0	0	0	0	1	0	0	0	911	1145	40	3	4705	3	ARHGEF5	7	144077006	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	250413	144077006	15061657	399	31147											
TPK1	27010	broad.mit.edu	37	chr7	144344276	144344276	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcaggtattagggataaTattcatttagctttctgagc	11	5	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144344276	A	A	144344276	1	1	14	0	1	0	0	0	0	0	0	0	16528	1421	49	5		5	TPK1	7	144344276	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	267270	144344276	14794387	400	31148											
GIMAP8	155038	broad.mit.edu	37	chr7	150163825	150163825	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagatgtccgaactgcggctCctcctcctgggaaaatgccg	11	14	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150163825	A	A	150163825	2	1	14	1	0	0	0	0	0	0	0	1	6449	842	30	3		3	GIMAP8	7	150163825	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	5819549	150163825	8974838	401	31149											
NOM1	64434	broad.mit.edu	37	chr7	156752947	156752948	+	Intron	INS	-	A	A													cctaaaaatcagtatctgggINSgtaaatattacacttgcttt							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156752948	A	A	156752947	6	5	14	0	1	1	1	0	0	0	0	0	10625	1247	43	0		0	NOM1	7	156752947	Intron	INS	-	TCGA-05-4405-01A-21D-1855-08	6589122	156752947	2385716	402	31150											
NCAPG2	54892	broad.mit.edu	37	chr7	158468339	158468339	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccatcgggtaaggatcttCtaaaaggctctataagtagg	11	7	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158468339	A	A	158468339	4	1	14	1	0	0	0	0	0	1	0	0	10303	922	32	3	2343	3	NCAPG2	7	158468339	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1715392	158468339	670324	403	31151											
ZNF596	169270	broad.mit.edu	37	chr8	195623	195623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcatctatgtgggaaagCcttcagtaaaagttctaacc	8	8	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195623	A	A	195623	3	1	14	1	0	0	0	0	1	0	0	0	18153	739	26	3	794	3	ZNF596	8	195623	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08		195623	146168399	404	31152											
DLGAP2	9228	broad.mit.edu	37	chr8	1497404	1497404	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggcaccaaggcggacggccGggcggacgaccaccaccacg	15	17	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1497404	C	C	1497404	3	2	14	1	0	0	0	0	1	0	0	0	4600	1116	39	4	547	4	DLGAP2	8	1497404	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1301781	1497404	144866618	405	31153											
DLGAP2	9228	broad.mit.edu	37	chr8	1616686	1616686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaactccacggacagcctgGacagcaacaaggccatgaac	9	14	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1616686	T	T	1616686	3	4	14	1	0	0	0	0	1	0	0	0	4600	1174	41	3	1780	3	DLGAP2	8	1616686	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	119282	1616686	144747336	406	31154											
MYOM2	9172	broad.mit.edu	37	chr8	2026987	2026987	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgatgcggtggctgcacttGaccccttggacctcagaagg	13	12	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2026987	C	C	2026987	3	2	14	1	0	0	0	0	1	0	0	0	10186	1290	45	4	1477	4	MYOM2	8	2026987	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	410301	2026987	144337035	407	31155											
MCPH1	79648	broad.mit.edu	37	chr8	6335061	6335061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtttatttctgtgggaaaAatattttttatgtttttgac	7	3	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6335061	T	T	6335061	1	4	14	0	1	0	0	0	0	0	0	0	9491	29	1	5		5	MCPH1	8	6335061	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	4308074	6335061	140028961	408	31156											
MSRA	4482	broad.mit.edu	37	chr8	10102509	10102509	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttggttatcaaatgacagGagcaactttttttttttctt	6	5	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10102509	T	T	10102509	1	4	14	0	1	0	0	0	0	0	0	0	9981	1189	41	3		3	MSRA	8	10102509	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3767448	10102509	136261513	409	31157											
GATA4	2626	broad.mit.edu	37	chr8	11606502	11606502	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaccccgctctggaggcgaGatgggacgggtcactatctg	14	13	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11606502	T	T	11606502	3	4	14	1	0	0	0	0	1	0	0	0	6318	942	33	3	697	3	GATA4	8	11606502	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1503993	11606502	134757520	410	31158											
MTMR7	9108	broad.mit.edu	37	chr8	17162060	17162060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaataagtctataaatgacCtattttggtgcttacacaca	5	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17162060	A	A	17162060	1	1	14	0	1	0	0	0	0	0	0	0	10042	696	24	2		2	MTMR7	8	17162060	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	5555558	17162060	129201962	411	31159											
CHRNA2	1135	broad.mit.edu	37	chr8	27328454	27328454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttcctacaatttgtgagCccacaggcatgagatgaagt	9	10	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27328454	A	A	27328454	1	1	14	0	1	0	0	0	0	0	0	0	3414	754	26	3		3	CHRNA2	8	27328454	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	10166394	27328454	119035568	412	31160											
C8orf80	389643	broad.mit.edu	37	chr8	27922222	27922222	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgtgcggatgtagggGtccagcttgatggacagctc	15	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27922222	A	A	27922222	2	1	14	1	0	0	0	0	0	0	0	1	2465	1252	44	4		4	C8orf80	8	27922222	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	593768	27922222	118441800	413	31161											
PPP2CB	5516	broad.mit.edu	37	chr8	30669865	30669865	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagcgtccgcacttggttctCgttcagctgcttacactcgt	9	14	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30669865	G	G	30669865	3	3	14	1	0	0	0	0	1	0	0	0	12482	893	31	4	884	4	PPP2CB	8	30669865	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2747643	30669865	115694157	414	31162											
TEX15	56154	broad.mit.edu	37	chr8	30706087	30706087	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaattaccttggtccttAcattgccctgccatggtaac	7	11	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30706087	T	T	30706087	4	4	14	1	0	0	0	0	0	1	0	0	15901	389	14	5	7938	5	TEX15	8	30706087	Nonsense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	36222	30706087	115657935	415	31163											
DUSP26	78986	broad.mit.edu	37	chr8	33451145	33451145	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtcgtgggcctcaacaccCaggtagcggatgcccagccc	13	15	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33451145	G	G	33451145	2	3	14	1	0	0	0	0	0	0	0	1	4863	581	21	4		4	DUSP26	8	33451145	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2745058	33451145	112912877	416	31164											
UNC5D	137970	broad.mit.edu	37	chr8	35631950	35631950	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgatacccccaatgccaAaggcaaggactggcagatgt	10	10	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35631950	G	G	35631950	3	3	14	1	0	0	0	0	1	0	0	0	17121	14	1	5	2674	5	UNC5D	8	35631950	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	2180805	35631950	110732072	417	31165											
KIAA0146	23514	broad.mit.edu	37	chr8	48586330	48586331	+	Intron	DNP	TC	CT	CT													ctgtattaatccaaactgccTcctcaaagacaaatgtgaat							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	48586331	CT	CT	48586330	1	2	14	0	1	0	0	0	0	0	0	0	8227	1566	54	5		5	KIAA0146	8	48586330	Intron	DNP	TC	TCGA-05-4405-01A-21D-1855-08	12954380	48586330	97777692	418	31166											
LYPLA1	10434	broad.mit.edu	37	chr8	55013426	55013426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaaacaaaagttgcatgaCccagtttcattactgttact	6	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55013426	A	A	55013426	1	1	14	0	1	0	0	0	0	0	0	0	9204	522	18	3		3	LYPLA1	8	55013426	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	6427096	55013426	91350596	419	31167											
PRDM14	63978	broad.mit.edu	37	chr8	70971045	70971045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaggtaaataccttccCacatctttcacatctgtagc	5	11	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70971045	A	A	70971045	3	1	14	1	0	0	0	0	1	0	0	0	12561	594	21	2	511	2	PRDM14	8	70971045	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	15957619	70971045	75392977	420	31168											
ZFHX4	79776	broad.mit.edu	37	chr8	77765759	77765759	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcagtaaccctcctataaCggttttagaagatatcagaa	6	9	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77765759	T	T	77765759	3	4	14	1	0	0	0	0	1	0	0	0	17761	536	19	4	6636	4	ZFHX4	8	77765759	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	6794714	77765759	68598263	421	31169											
ZFHX4	79776	broad.mit.edu	37	chr8	77776250	77776250	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcggtcagcctttgattGacccacaagagacagtgctt	9	10	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77776250	T	T	77776250	3	4	14	1	0	0	0	0	1	0	0	0	17761	1290	45	3	10338	3	ZFHX4	8	77776250	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	10491	77776250	68587772	422	31170											
ZNF704	619279	broad.mit.edu	37	chr8	81557434	81557434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtttgctagccttcagcCccgcgccgccaacctcccgg	10	19	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81557434	A	A	81557434	1	1	14	0	1	0	0	0	0	0	0	0	18234	638	22	2		2	ZNF704	8	81557434	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3781184	81557434	64806588	423	31171											
SLC10A5	347051	broad.mit.edu	37	chr8	82606414	82606415	+	Missense_Mutation	DNP	CC	AA	AA													aaacaggaatatggaatgtaCctgacaaccctaatatccta							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	82606415	AA	AA	82606414	3	1	14	1	0	0	0	0	1	0	0	0	14490	507	18	3	524	3	SLC10A5	8	82606414	Missense_Mutation	DNP	CC	TCGA-05-4405-01A-21D-1855-08	1048980	82606414	63757608	424	31172											
CNGB3	54714	broad.mit.edu	37	chr8	87644951	87644951	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttcaaaatgacagcactGtgtatccagtgattcatact	6	9	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87644951	A	A	87644951	1	1	14	0	1	0	0	0	0	0	0	0	3633	1392	48	4		4	CNGB3	8	87644951	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5038537	87644951	58719071	425	31173											
ESRP1	54845	broad.mit.edu	37	chr8	95653542	95653542	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctccccctccccacctaTcgtcatgacggcctctccgg	6	22	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95653542	C	C	95653542	1	2	14	0	1	0	0	0	0	0	0	0	5300	1450	50	5		5	ESRP1	8	95653542	5'UTR	SNP	T	TCGA-05-4405-01A-21D-1855-08	8008591	95653542	50710480	426	31174											
SPAG1	6674	broad.mit.edu	37	chr8	101196189	101196189	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttctttcatttaagatttgAcgtggagaaggaatgtttaa	10	3	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101196189	T	T	101196189	3	4	14	1	0	0	0	0	1	0	0	0	15091	275	10	5	512	5	SPAG1	8	101196189	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	5542647	101196189	45167833	427	31175											
SNX31	169166	broad.mit.edu	37	chr8	101612589	101612589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattcacctttgtttgactGtcttctttctggaaagcttc	7	9	4	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101612589	T	T	101612589	3	4	14	1	0	0	0	0	1	0	0	0	15015	1368	48	3	584	3	SNX31	8	101612589	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	416400	101612589	44751433	428	31176											
RIMS2	9699	broad.mit.edu	37	chr8	104671646	104671646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttcaccttctgggtctGttggcaacaccagctgcact	8	12	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104671646	T	T	104671646	1	4	14	0	1	0	0	0	0	0	0	0	13479	1392	48	3		3	RIMS2	8	104671646	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3059057	104671646	41692376	429	31177											
RIMS2	9699	broad.mit.edu	37	chr8	105025733	105025734	+	Intron	DNP	CC	AA	AA													tcaacagaacaacggcctctCcttgagcggaccaccacccg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	105025734	AA	AA	105025733	1	1	14	0	1	0	0	0	0	0	0	0	13479	842	30	3		3	RIMS2	8	105025733	Intron	DNP	CC	TCGA-05-4405-01A-21D-1855-08	354087	105025733	41338289	430	31178											
ZFPM2	23414	broad.mit.edu	37	chr8	106431025	106431025	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagagacttgtactctttaCcagatagttaattctaacaa	5	7	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106431025	T	T	106431025	1	4	14	0	1	0	0	0	0	0	0	0	17784	522	18	4		4	ZFPM2	8	106431025	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1405292	106431025	39932997	431	31179											
PKHD1L1	93035	broad.mit.edu	37	chr8	110431379	110431379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaagaacgaaatacactgGgacaaatgtttctcttcaga	8	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110431379	T	T	110431379	3	4	14	1	0	0	0	0	1	0	0	0	12067	1232	43	2	2500	2	PKHD1L1	8	110431379	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	4000354	110431379	35932643	432	31180											
CSMD3	114788	broad.mit.edu	37	chr8	113668560	113668560	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaacatcataattcagttCagtctgaaatctaagattaa	5	7	5	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113668560	A	A	113668560	4	1	14	1	0	0	0	0	0	1	0	0	3980	835	29	3	8512	3	CSMD3	8	113668560	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3237181	113668560	32695462	433	31181											
FER1L6	654463	broad.mit.edu	37	chr8	125061726	125061726	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagcttggcaggagaaaaGagtgagacatggaagctgat	16	4	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125061726	T	T	125061726	1	4	14	0	1	0	0	0	0	0	0	0	5872	957	33	3		3	FER1L6	8	125061726	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	11393166	125061726	21302296	434	31182											
FER1L6	654463	broad.mit.edu	37	chr8	125076699	125076699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacctcccacagtggtgcCcgactctgcccaggcccagc	10	20	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125076699	A	A	125076699	3	1	14	1	0	0	0	0	1	0	0	0	5872	623	22	2	3538	2	FER1L6	8	125076699	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	14973	125076699	21287323	435	31183											
FAM49B	51571	broad.mit.edu	37	chr8	130891660	130891660	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcaaggaaaaaatttggCccctgctcaaggtctgtgca	9	9	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130891660	A	A	130891660	2	1	14	1	0	0	0	0	0	0	0	1	5627	726	26	3		3	FAM49B	8	130891660	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	5814961	130891660	15472362	436	31184											
ADCY8	114	broad.mit.edu	37	chr8	131848677	131848677	+	Frame_Shift_Del	DEL	C	-	-													acaggtcaccatggccaacaCccccgtgaagacaaagtact							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131848677	-	-	131848677	7	5	14	1	0	1	0	1	0	0	0	0	300	507	18	0	1262	0	ADCY8	8	131848677	Frame_Shift_Del	DEL	C	TCGA-05-4405-01A-21D-1855-08	957017	131848677	14515345	437	31185											
LRRC6	23639	broad.mit.edu	37	chr8	133650267	133650267	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgagaaagagctccttcaGatggatattgtgctgcaagt	11	7	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133650267	A	A	133650267	2	1	14	1	0	0	0	0	0	0	0	1	9103	933	33	4		4	LRRC6	8	133650267	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	1801590	133650267	12713755	438	31186											
TG	7038	broad.mit.edu	37	chr8	133941459	133941459	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggagtggtggggagataTgcactcagaagaaggtgtgg	19	3	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133941459	C	C	133941459	1	2	14	0	1	0	0	0	0	0	0	0	15936	1479	51	5		5	TG	8	133941459	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	291192	133941459	12422563	439	31187											
COL22A1	169044	broad.mit.edu	37	chr8	139727921	139727921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgagagcaagtttctcCtaccttttcacctcggtcac	7	12	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139727921	A	A	139727921	1	1	14	0	1	0	0	0	0	0	0	0	3713	696	24	2		2	COL22A1	8	139727921	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	5786462	139727921	6636101	440	31188											
CYP11B1	1584	broad.mit.edu	37	chr8	143957316	143957316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggagacacagctgcagGgtcagaccttgcacaggagg	15	10	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143957316	T	T	143957316	1	4	14	0	1	0	0	0	0	0	0	0	4178	1247	43	2		2	CYP11B1	8	143957316	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4229395	143957316	2406706	441	31189											
CYP11B2	1585	broad.mit.edu	37	chr8	143996446	143996446	+	Intron	DEL	C	-	-													ggtctctggggctggaccttCccgcatggcccacaccttct							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143996446	-	-	143996446	6	5	14	0	1	1	0	1	0	0	0	0	4179	870	30	0		0	CYP11B2	8	143996446	Intron	DEL	C	TCGA-05-4405-01A-21D-1855-08	39130	143996446	2367576	442	31190											
FAM83H	286077	broad.mit.edu	37	chr8	144811484	144811484	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgaacatgtccatcaccaCggccaccacctgcaggggcg	11	15	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144811484	T	T	144811484	3	4	14	1	0	0	0	0	1	0	0	0	5693	536	19	4	3094	4	FAM83H	8	144811484	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	815038	144811484	1552538	443	31191											
IL33	90865	broad.mit.edu	37	chr9	6241678	6241678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaatattatattttaatcCaacagaatactgaaaaatga	3	5	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6241678	A	A	6241678	1	1	14	0	1	0	0	0	0	0	0	0	7763	608	21	2		2	IL33	9	6241678	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08		6241678	134971753	444	31192											
GLDC	2731	broad.mit.edu	37	chr9	6644575	6644575	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacaaaagacaaataggccaGaataatctaagtccaaggga	8	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6644575	T	T	6644575	1	4	14	0	1	0	0	0	0	0	0	0	6497	957	33	3		3	GLDC	9	6644575	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	402897	6644575	134568856	445	31193											
AQP7	364	broad.mit.edu	37	chr9	33386153	33386153	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgtagcgacgggaccGgtcaccatcagctgtccacc	11	16	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33386153	A	A	33386153	2	1	14	1	0	0	0	0	0	0	0	1	833	1103	39	4		4	AQP7	9	33386153	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	26741578	33386153	107827278	446	31194											
ARID3C	138715	broad.mit.edu	37	chr9	34627776	34627776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagctggggccctgggccCctggacggctctcctcagct	15	16	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34627776	A	A	34627776	3	1	14	1	0	0	0	0	1	0	0	0	920	623	22	2	1029	2	ARID3C	9	34627776	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1241623	34627776	106585655	447	31195											
ZCCHC7	84186	broad.mit.edu	37	chr9	37354613	37354613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaggtaccagtgacatgGggctcatttctaattaacat	9	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37354613	T	T	37354613	1	4	14	0	1	0	0	0	0	0	0	0	17719	1247	43	2		2	ZCCHC7	9	37354613	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2726837	37354613	103858818	448	31196											
CNTNAP3	79937	broad.mit.edu	37	chr9	39177505	39177505	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcttagcattgccttaaAggagaaggaaaaaaacagtt	10	6	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39177505	T	T	39177505	1	4	14	0	1	0	0	0	0	0	0	0	3680	87	3	5		5	CNTNAP3	9	39177505	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1822892	39177505	102035926	449	31197											
FAM75A6	389730	broad.mit.edu	37	chr9	43627706	43627706	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtgacttgtatccccacGacattctggccatcagagct	8	13	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627706	A	A	43627706	2	1	14	1	0	0	0	0	0	0	0	1	5674	1045	37	4		4	FAM75A6	9	43627706	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	4450201	43627706	97585725	450	31198											
FAM75A6	389730	broad.mit.edu	37	chr9	43628486	43628486	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccacaccctgattgcccaAttctcctgctacccctcgcc	4	21	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43628486	G	G	43628486	1	3	14	0	1	0	0	0	0	0	0	0	5674	116	4	5		5	FAM75A6	9	43628486	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	780	43628486	97584945	451	31199											
TRPM6	140803	broad.mit.edu	37	chr9	77377953	77377953	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcagggcagagagatcctGcaggtgtcccacctggctgt	14	11	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377953	A	A	77377953	4	1	14	1	0	0	0	0	0	1	0	0	16715	1328	46	4	2490	4	TRPM6	9	77377953	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	33749467	77377953	63835478	452	31200											
TLE1	7088	broad.mit.edu	37	chr9	84206063	84206063	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttttttgagttaagagtGgtgtttcatggacactctaa	11	4	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84206063	A	A	84206063	1	1	14	0	1	0	0	0	0	0	0	0	16061	1363	47	4		4	TLE1	9	84206063	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	6828110	84206063	57007368	453	31201											
FLJ46321	389763	broad.mit.edu	37	chr9	84605870	84605870	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgtcccctttggcttcttCggcttctgcgactgagtcat	10	12	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84605870	T	T	84605870	3	4	14	1	0	0	0	0	1	0	0	0	5990	893	31	4	499	4	FLJ46321	9	84605870	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	399807	84605870	56607561	454	31202											
FLJ46321	389763	broad.mit.edu	37	chr9	84609108	84609108	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggacttactgactaattcCcagggcatctcgagtgggga	12	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84609108	A	A	84609108	2	1	14	1	0	0	0	0	0	0	0	1	5990	610	22	2		2	FLJ46321	9	84609108	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	3238	84609108	56604323	455	31203											
SLC35D2	11046	broad.mit.edu	37	chr9	99086537	99086537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagcagtgacccccacaCaagcactttaagcgaagaaa	9	13	0	2	rs147730425	by1000genomes	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99086537	A	A	99086537	1	1	14	0	1	0	0	0	0	0	0	0	14696	493	17	3		3	SLC35D2	9	99086537	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	14477429	99086537	42126894	456	31204											
ZNF367	195828	broad.mit.edu	37	chr9	99160442	99160442	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctataaaatttgctcaacTtacctgtatgagtccttttg	5	9	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99160442	G	G	99160442	1	3	14	0	1	0	0	0	0	0	0	0	17997	1624	56	5		5	ZNF367	9	99160442	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	73905	99160442	42052989	457	31205											
KIAA1529	57653	broad.mit.edu	37	chr9	100056343	100056343	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcatgtggctgattgcCcgcatcgacaggaccatcat	11	13	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100056343	T	T	100056343	2	4	14	1	0	0	0	0	0	0	0	1	8310	610	22	4		4	KIAA1529	9	100056343	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	895901	100056343	41157088	458	31206											
NCBP1	4686	broad.mit.edu	37	chr9	100413658	100413658	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactaccacatagttgaggtAtgaattccatgtggagcgtg	11	7	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100413658	G	G	100413658	1	3	14	0	1	0	0	0	0	0	0	0	10306	464	16	5		5	NCBP1	9	100413658	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	357315	100413658	40799773	459	31207											
GABBR2	9568	broad.mit.edu	37	chr9	101148007	101148007	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcataggagagcatccctCcaaggatgataaggttgttc	11	8	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101148007	T	T	101148007	3	4	14	1	0	0	0	0	1	0	0	0	6216	855	30	4	1284	4	GABBR2	9	101148007	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	734349	101148007	40065424	460	31208											
COL15A1	1306	broad.mit.edu	37	chr9	101797356	101797356	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaagggacaagctggccctCctggggtcatgggaccccca	13	13	1	0	rs142089094	byFrequency;by1000genomes	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101797356	T	T	101797356	3	4	14	1	0	0	0	0	1	0	0	0	3704	855	30	4	2210	4	COL15A1	9	101797356	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	649349	101797356	39416075	461	31209											
TGFBR1	7046	broad.mit.edu	37	chr9	101907147	101907147	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataccattgatattgctccAaaccacagagtgggaacaaa	8	9	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101907147	G	G	101907147	2	3	14	1	0	0	0	0	0	0	0	1	15944	117	5	5		5	TGFBR1	9	101907147	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	109791	101907147	39306284	462	31210											
ALDOB	229	broad.mit.edu	37	chr9	104189909	104189909	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtactgagcacagcgctctGagaggccatcaagccctgca	11	13	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104189909	C	C	104189909	4	2	14	1	0	0	0	0	0	1	0	0	508	1294	45	4	719	4	ALDOB	9	104189909	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2282762	104189909	37023522	463	31211											
ABCA1	19	broad.mit.edu	37	chr9	107589339	107589339	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggctgctgccaggttggCtctggagaagagtgtgctaa	15	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107589339	T	T	107589339	3	4	14	1	0	0	0	0	1	0	0	0	28	797	28	4	4698	4	ABCA1	9	107589339	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3399430	107589339	33624092	464	31212											
DFNB31	25861	broad.mit.edu	37	chr9	117165723	117165723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtcagcagagctcaggCtccagccctgtgtcgggagc	15	13	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117165723	A	A	117165723	1	1	14	0	1	0	0	0	0	0	0	0	4495	812	28	3		3	DFNB31	9	117165723	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	9576384	117165723	24047708	465	31213											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123162870	123162870	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggatcaagtaagaacacaGtgaagccatggcaaacggtg	12	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123162870	C	C	123162870	1	2	14	0	1	0	0	0	0	0	0	0	3176	1044	36	4		4	CDK5RAP2	9	123162870	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5997147	123162870	18050561	466	31214											
OR1N2	138882	broad.mit.edu	37	chr9	125315473	125315473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggtttttatctgcgcagaTcacacgaactacaagggatg	10	8	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125315473	A	A	125315473	3	1	14	1	0	0	0	0	1	0	0	0	11064	1435	50	5	27	5	OR1N2	9	125315473	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	2152603	125315473	15897958	467	31215											
FIBCD1	84929	broad.mit.edu	37	chr9	133799190	133799190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagccggccgggtagtGggtgggaaagacagagtaga	19	6	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133799190	T	T	133799190	3	4	14	1	0	0	0	0	1	0	0	0	5941	1348	47	2	611	2	FIBCD1	9	133799190	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	8483717	133799190	7414241	468	31216											
LAMC3	10319	broad.mit.edu	37	chr9	133962991	133962991	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgaagcacgcagacaggaGctggaggaagctgagcgggt	17	8	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133962991	C	C	133962991	3	2	14	1	0	0	0	0	1	0	0	0	8688	962	34	4	4461	4	LAMC3	9	133962991	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	163801	133962991	7250440	469	31217											
C9orf171	389799	broad.mit.edu	37	chr9	135357700	135357700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatttctttcgtaggctGccggcccggcctcggtggga	14	13	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135357700	T	T	135357700	3	4	14	1	0	0	0	0	1	0	0	0	2496	1319	46	3	205	3	C9orf171	9	135357700	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1394709	135357700	5855731	470	31218											
C9orf171	389799	broad.mit.edu	37	chr9	135374112	135374112	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaagccccgggaaagaagcTacagtctgcccggcattaat	11	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135374112	A	A	135374112	3	1	14	1	0	0	0	0	1	0	0	0	2496	1522	53	5	344	5	C9orf171	9	135374112	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	16412	135374112	5839319	471	31219											
ADAMTS13	11093	broad.mit.edu	37	chr9	136287523	136287523	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccagtcaccaaggcccCctctcactccgctccactcc	4	22	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136287523	A	A	136287523	1	1	14	0	1	0	0	0	0	0	0	0	258	638	22	2		2	ADAMTS13	9	136287523	5'UTR	SNP	C	TCGA-05-4405-01A-21D-1855-08	913411	136287523	4925908	472	31220											
SARDH	1757	broad.mit.edu	37	chr9	136582532	136582532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatgtgctgggtgaacaCctcccagtccaggtcaaaga	10	11	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136582532	A	A	136582532	3	1	14	1	0	0	0	0	1	0	0	0	13953	507	18	3	1746	3	SARDH	9	136582532	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	295009	136582532	4630899	473	31221											
UAP1L1	91373	broad.mit.edu	37	chr9	139976619	139976620	+	Intron	DNP	GG	TT	TT													agacggcacagctctacctcGgttaaccaatggggtcggtg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	139976620	TT	TT	139976619	1	4	14	0	1	0	0	0	0	0	0	0	16952	1131	39	1		1	UAP1L1	9	139976619	Intron	DNP	GG	TCGA-05-4405-01A-21D-1855-08	3394087	139976619	1236812	474	31222											
EHMT1	79813	broad.mit.edu	37	chr9	140638453	140638453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagctcgaggaggacgacGgccatggtgcagagcaggcg	19	9	0	1	rs143891279		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140638453	T	T	140638453	3	4	14	1	0	0	0	0	1	0	0	0	5023	1116	39	1	1103	1	EHMT1	9	140638453	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	661834	140638453	574978	475	31223											
CACNA1B	774	broad.mit.edu	37	chr9	140870356	140870356	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcttctccggcttctccTagattttgcagagtttgttt	7	12	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140870356	C	C	140870356	1	2	14	0	1	0	0	0	0	0	0	0	2565	1537	53	5		5	CACNA1B	9	140870356	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	231903	140870356	343075	476	31224											
PRKCQ	5588	broad.mit.edu	37	chr10	6498720	6498720	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgcacattccaaaatcCgcgatcttgatatgtccatc	5	13	1	1	rs55867019		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6498720	A	A	6498720	2	1	14	1	0	0	0	0	0	0	0	1	12621	639	23	1		1	PRKCQ	10	6498720	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08		6498720	129036027	477	31225											
OPTN	10133	broad.mit.edu	37	chr10	13152401	13152401	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaaaagagcgtctaatGgccttgagtcatgagaatga	12	6	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13152401	A	A	13152401	3	1	14	1	0	0	0	0	1	0	0	0	10983	1348	47	4	300	4	OPTN	10	13152401	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	6653681	13152401	122382346	478	31226											
HSPA14	51182	broad.mit.edu	37	chr10	14894416	14894416	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatccttatctctcagcgTcatggaagttaacagtggaa	8	9	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14894416	G	G	14894416	3	3	14	1	0	0	0	0	1	0	0	0	7476	1667	58	5	650	5	HSPA14	10	14894416	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1742015	14894416	120640331	479	31227											
FAM171A1	221061	broad.mit.edu	37	chr10	15255798	15255798	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgacgaggggctggctgaCataggagtggtccccgggga	19	9	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15255798	T	T	15255798	3	4	14	1	0	0	0	0	1	0	0	0	5535	478	17	4	887	4	FAM171A1	10	15255798	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	361382	15255798	120278949	480	31228											
RSU1	6251	broad.mit.edu	37	chr10	16635619	16635619	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagccaaagaaaaccaaaaGatcacttctgtgttctctgg	7	9	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16635619	C	C	16635619	1	2	14	0	1	0	0	0	0	0	0	0	13827	957	33	4		4	RSU1	10	16635619	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1379821	16635619	118899128	481	31229											
CACNB2	783	broad.mit.edu	37	chr10	18803321	18803321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattaacttccaagctccCattgtccacctgctcaactg	4	15	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18803321	A	A	18803321	1	1	14	0	1	0	0	0	0	0	0	0	2579	609	21	2		2	CACNB2	10	18803321	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2167702	18803321	116731426	482	31230											
WAC	51322	broad.mit.edu	37	chr10	28872558	28872558	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaaaatgtttcaatcaCagtcttaatgtgtttatttg	5	4	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28872558	T	T	28872558	1	4	14	0	1	0	0	0	0	0	0	0	17374	493	17	4		4	WAC	10	28872558	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	10069237	28872558	106662189	483	31231											
PARD3	56288	broad.mit.edu	37	chr10	34649299	34649299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataagaggcaaaatatttcCatgaaggttccacagcaaga	8	8	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34649299	A	A	34649299	1	1	14	0	1	0	0	0	0	0	0	0	11537	609	21	2		2	PARD3	10	34649299	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	5776741	34649299	100885448	484	31232											
ZNF248	57209	broad.mit.edu	37	chr10	38108174	38108174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctgacattaatttgtGccgtttcagatagaagttta	7	6	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38108174	T	T	38108174	1	4	14	0	1	0	0	0	0	0	0	0	17919	1334	46	3		3	ZNF248	10	38108174	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3458875	38108174	97426573	485	31233											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43671480	43671480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagatttcctgaccattGgtaagtatactttacattta	6	7	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43671480	T	T	43671480	3	4	14	1	0	0	0	0	1	0	0	0	3973	1362	47	2	1358	2	CSGALNACT2	10	43671480	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	5563306	43671480	91863267	486	31234											
ZNF485	220992	broad.mit.edu	37	chr10	44112635	44112635	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatactggagaaaaacccTatcactgtaagaaatgtggg	9	7	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44112635	C	C	44112635	3	2	14	1	0	0	0	0	1	0	0	0	18065	1522	53	5	1158	5	ZNF485	10	44112635	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	441155	44112635	91422112	487	31235											
ALOX5	240	broad.mit.edu	37	chr10	45941036	45941036	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccgattccgcaagaacctCgaggccattgtcagcgtgat	11	13	1	2	rs28395861	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45941036	A	A	45941036	2	1	14	1	0	0	0	0	0	0	0	1	540	871	31	3		3	ALOX5	10	45941036	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	1828401	45941036	89593711	488	31236											
A1CF	29974	broad.mit.edu	37	chr10	52595854	52595854	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtagcagtttcctcctcGccatggcagctgctcgatga	11	13	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52595854	A	A	52595854	3	1	14	1	0	0	0	0	1	0	0	0	2	1087	38	4	1232	4	A1CF	10	52595854	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	6654818	52595854	82938893	489	31237											
SRGN	5552	broad.mit.edu	37	chr10	70856807	70856807	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgattagaagctgtgtagtaGatacttagtaacaatgtggg	12	3	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70856807	C	C	70856807	1	2	14	0	1	0	0	0	0	0	0	0	15266	957	33	4		4	SRGN	10	70856807	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	18260953	70856807	64677940	490	31238											
UNC5B	219699	broad.mit.edu	37	chr10	73053217	73053217	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcggtgacctgtggacccAcaggcctcctgctgtgccgc	12	17	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73053217	T	T	73053217	3	4	14	1	0	0	0	0	1	0	0	0	17118	159	6	5	1874	5	UNC5B	10	73053217	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	2196410	73053217	62481530	491	31239											
OIT3	170392	broad.mit.edu	37	chr10	74692166	74692166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgttggacgagcgttccCgctgtgcccagggttgccac	15	12	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74692166	A	A	74692166	3	1	14	1	0	0	0	0	1	0	0	0	10944	652	23	1	1556	1	OIT3	10	74692166	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1638949	74692166	60842581	492	31240											
POLR3A	11128	broad.mit.edu	37	chr10	79773421	79773421	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacatacccccatcagaacaAgggcctctgctttagcttct	6	14	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79773421	T	T	79773421	3	4	14	1	0	0	0	0	1	0	0	0	12323	72	3	5	2697	5	POLR3A	10	79773421	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	5081255	79773421	55761326	493	31241											
AGAP11	119385	broad.mit.edu	37	chr10	88769657	88769657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggctgccccgacgagtgcGtgtagtatctgttttatttg	12	9	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88769657	T	T	88769657	3	4	14	1	0	0	0	0	1	0	0	0	367	1145	40	3	1662	3	AGAP11	10	88769657	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	8996236	88769657	46765090	494	31242											
BTAF1	9044	broad.mit.edu	37	chr10	93702081	93702081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtaacccatgcaacc	15	6	0	0	rs61669989		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93702081	T	T	93702081	1	4	14	0	1	0	0	0	0	0	0	0	1545	1392	48	3		3	BTAF1	10	93702081	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4932424	93702081	41832666	495	31243											
IDE	3416	broad.mit.edu	37	chr10	94274976	94274976	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gataatagagtacaaaccagCaacattttaaactatagtcg	6	7	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94274976	T	T	94274976	1	4	14	0	1	0	0	0	0	0	0	0	7563	725	25	4		4	IDE	10	94274976	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	572895	94274976	41259771	496	31244											
CYP2C19	1557	broad.mit.edu	37	chr10	96535107	96535107	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagcttcctctttcttgCctgggatctccctcctagtt	7	14	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96535107	G	G	96535107	1	3	14	0	1	0	0	0	0	0	0	0	4199	754	26	4		4	CYP2C19	10	96535107	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2260131	96535107	38999640	497	31245											
PI4K2A	55361	broad.mit.edu	37	chr10	99361691	99361691	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagcgactgtgctgcacgGggcaatgggaagatgcccag	17	9	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99361691	A	A	99361691	3	1	14	1	0	0	0	0	1	0	0	0	11966	1232	43	4		4	PI4K2A	10	99361691	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2826584	99361691	36173056	498	31246											
HPS1	3257	broad.mit.edu	37	chr10	100203147	100203147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacttccatttttgttgcaCcctcacaactggacaaagta	7	11	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100203147	A	A	100203147	1	1	14	0	1	0	0	0	0	0	0	0	7406	522	18	3		3	HPS1	10	100203147	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	841456	100203147	35331600	499	31247											
CHUK	1147	broad.mit.edu	37	chr10	101964958	101964958	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtattttgctgtcctgtacTatatacaagaagatgagaaa	8	5	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101964958	A	A	101964958	5	1	14	1	0	0	0	0	0	0	1	0	3447	1536	53	5	1047	5	CHUK	10	101964958	Splice_Site	SNP	T	TCGA-05-4405-01A-21D-1855-08	1761811	101964958	33569789	500	31248											
GBF1	8729	broad.mit.edu	37	chr10	104121694	104121694	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagcactataactggcttcTaggaaaaaacgcattataaa	7	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104121694	C	C	104121694	1	2	14	0	1	0	0	0	0	0	0	0	6333	1537	53	5		5	GBF1	10	104121694	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	2156736	104121694	31413053	501	31249											
SORCS1	114815	broad.mit.edu	37	chr10	108380225	108380225	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacacgtaagtgagggtGcccacttggctgggccacag	13	13	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108380225	A	A	108380225	2	1	14	1	0	0	0	0	0	0	0	1	15044	1306	46	4		4	SORCS1	10	108380225	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	4258531	108380225	27154522	502	31250											
SORCS1	114815	broad.mit.edu	37	chr10	108389288	108389288	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagctaggagcatctgcCtgcctttgacagaatccctg	9	13	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108389288	A	A	108389288	1	1	14	0	1	0	0	0	0	0	0	0	15044	696	24	2		2	SORCS1	10	108389288	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	9063	108389288	27145459	503	31251											
NRAP	4892	broad.mit.edu	37	chr10	115411725	115411725	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacagcctcctcagtgacctCtccctgtggctctcctaaag	7	17	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115411725	T	T	115411725	1	4	14	0	1	0	0	0	0	0	0	0	10733	928	32	4		4	NRAP	10	115411725	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	7022437	115411725	20123022	504	31252											
CASP7	840	broad.mit.edu	37	chr10	115457383	115457383	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtttgcttaatcagggAccctggaccacgtcagcctg	11	11	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115457383	C	C	115457383	1	2	14	0	1	0	0	0	0	0	0	0	2702	290	10	5		5	CASP7	10	115457383	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	45658	115457383	20077364	505	31253											
PDZD8	118987	broad.mit.edu	37	chr10	119133732	119133732	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgactcgccttgatctgggGccctgtccagggtgggaagg	16	11	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119133732	A	A	119133732	1	1	14	0	1	0	0	0	0	0	0	0	11799	1218	42	4		4	PDZD8	10	119133732	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3676349	119133732	16401015	506	31254											
CPXM2	119587	broad.mit.edu	37	chr10	125530733	125530733	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctccttacatccctctgcCctggataatgcccactttcc	4	18	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125530733	G	G	125530733	1	3	14	0	1	0	0	0	0	0	0	0	3870	638	22	4		4	CPXM2	10	125530733	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	6397001	125530733	10004014	507	31255											
DOCK1	1793	broad.mit.edu	37	chr10	128821561	128821561	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggtcacggtgtctgtGtacgatgaggatgggaaacg	18	5	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128821561	T	T	128821561	2	4	14	1	0	0	0	0	0	0	0	1	4724	1364	48	3		3	DOCK1	10	128821561	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	3290828	128821561	6713186	508	31256											
MKI67	4288	broad.mit.edu	37	chr10	129903152	129903152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaagagctctttgaagcCagccaggtcttctagagcct	11	11	3	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129903152	A	A	129903152	3	1	14	1	0	0	0	0	1	0	0	0	9691	594	21	2	2830	2	MKI67	10	129903152	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1081591	129903152	5631595	509	31257											
ZNF511	118472	broad.mit.edu	37	chr10	135123552	135123552	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagagtgctgcccccagctCtcgggtgctcgggcaaggcc	14	15	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135123552	G	G	135123552	1	3	14	0	1	0	0	0	0	0	0	0	18082	928	32	4		4	ZNF511	10	135123552	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	5220400	135123552	411195	510	31258											
EIF4G2	1982	broad.mit.edu	37	chr11	10822111	10822111	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaacatctcaggaagaaaGtgtttaggagccctcatttc	8	9	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10822111	A	A	10822111	2	1	14	1	0	0	0	0	0	0	0	1	5079	1020	36	4		4	EIF4G2	11	10822111	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08		10822111	124184405	511	31259											
USH1C	10083	broad.mit.edu	37	chr11	17517100	17517100	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacacagggccctgtggcCcgcctgcctattcaccgtgg	12	16	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17517100	T	T	17517100	1	4	14	0	1	0	0	0	0	0	0	0	17160	638	22	4		4	USH1C	11	17517100	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	6694989	17517100	117489416	512	31260											
MYOD1	4654	broad.mit.edu	37	chr11	17741219	17741219	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgggtgggcattcagacTgccagcactttgctatctac	11	11	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17741219	G	G	17741219	1	3	14	0	1	0	0	0	0	0	0	0	10182	1595	55	5		5	MYOD1	11	17741219	5'UTR	SNP	T	TCGA-05-4405-01A-21D-1855-08	224119	17741219	117265297	513	31261											
LDHA	3939	broad.mit.edu	37	chr11	18424599	18424599	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttttgtttttgaaaagatTatataaaaagtcgatgggca	8	3	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18424599	C	C	18424599	1	2	14	0	1	0	0	0	0	0	0	0	8770	1769	61	5		5	LDHA	11	18424599	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	683380	18424599	116581917	514	31262											
EHF	26298	broad.mit.edu	37	chr11	34680205	34680205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcttgaaatcagaggcaGtggctcagctatggggtaaa	14	6	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34680205	T	T	34680205	3	4	14	1	0	0	0	0	1	0	0	0	5021	1029	36	3	759	3	EHF	11	34680205	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	16255606	34680205	100326311	515	31263											
PRDM11	56981	broad.mit.edu	37	chr11	45226314	45226314	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatggctcagacgagaccaAagccaactggatgaggtgag	14	8	1	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45226314	C	C	45226314	3	2	14	1	0	0	0	0	1	0	0	0	12558	14	1	5	659	5	PRDM11	11	45226314	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	10546109	45226314	89780202	516	31264											
PACSIN3	29763	broad.mit.edu	37	chr11	47201708	47201708	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagccgtgccctgggcggGggccagggctgggacctgtg	21	11	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47201708	A	A	47201708	1	1	14	0	1	0	0	0	0	0	0	0	11470	1247	43	4		4	PACSIN3	11	47201708	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1975394	47201708	87804808	517	31265											
SPRYD5	84767	broad.mit.edu	37	chr11	55648819	55648819	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaacaggacaaataggttCtgttttatgtcttgaattgc	8	6	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55648819	T	T	55648819	1	4	14	0	1	0	0	0	0	0	0	0	15229	928	32	4		4	SPRYD5	11	55648819	5'Flank	SNP	C	TCGA-05-4405-01A-21D-1855-08	8447111	55648819	79357697	518	31266											
OR5T2	219464	broad.mit.edu	37	chr11	56000616	56000616	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaagaatgaacaacaccatGactcaaggggatgttaactg	9	7	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56000616	C	C	56000616	3	2	14	1	0	0	0	0	1	0	0	0	11276	1290	45	4	1032	4	OR5T2	11	56000616	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	351797	56000616	79005900	519	31267											
GLYATL2	219970	broad.mit.edu	37	chr11	58605721	58605721	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actaccctcatattcagtaaCtattgctcctacctgtttct	3	13	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58605721	G	G	58605721	1	3	14	0	1	0	0	0	0	0	0	0	6545	580	20	4		4	GLYATL2	11	58605721	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2605105	58605721	76400795	520	31268											
GLYATL2	219970	broad.mit.edu	37	chr11	58605840	58605840	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgaaaatggcgccatatAcctacgatgcaacagaacaa	8	9	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58605840	T	T	58605840	3	4	14	1	0	0	0	0	1	0	0	0	6545	405	14	5	820	5	GLYATL2	11	58605840	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	119	58605840	76400676	521	31269											
MS4A1	931	broad.mit.edu	37	chr11	60231748	60231748	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctctccatctcccccacctCtcttttttacagtatattat	1	16	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60231748	T	T	60231748	1	4	14	0	1	0	0	0	0	0	0	0	9948	928	32	4		4	MS4A1	11	60231748	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1625908	60231748	74774768	522	31270											
C11orf66	220004	broad.mit.edu	37	chr11	61250221	61250221	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccctgccctggagcatgCgccagaccagctcaggctat	10	16	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61250221	T	T	61250221	3	4	14	1	0	0	0	0	1	0	0	0	1668	768	27	4	332	4	C11orf66	11	61250221	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1018473	61250221	73756295	523	31271											
POLR2G	5436	broad.mit.edu	37	chr11	62532503	62532503	+	Intron	DEL	G	-	-													accatgcccggctaatttttGtatttttagtaatgacgggg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62532503	-	-	62532503	6	5	14	0	1	1	0	1	0	0	0	0	12315	1392	48	0		0	POLR2G	11	62532503	Intron	DEL	G	TCGA-05-4405-01A-21D-1855-08	1282282	62532503	72474013	524	31272											
TSGA10IP	254187	broad.mit.edu	37	chr11	65714870	65714870	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggcaaaggggagctaggaTcagagccccccagtggtctc	14	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65714870	A	A	65714870	3	1	14	1	0	0	0	0	1	0	0	0	16743	1435	50	5	584	5	TSGA10IP	11	65714870	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	3182367	65714870	69291646	525	31273											
BRMS1	25855	broad.mit.edu	37	chr11	66105334	66105334	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgctctgagggtccccCtggctgtgaacagcagggtc	14	13	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66105334	A	A	66105334	1	1	14	0	1	0	0	0	0	0	0	0	1525	696	24	2		2	BRMS1	11	66105334	3'UTR	SNP	C	TCGA-05-4405-01A-21D-1855-08	390464	66105334	68901182	526	31274											
GDPD4	220032	broad.mit.edu	37	chr11	76979737	76979737	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtataccctccgtccaagctGattctgggactctgctcatc	8	14	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76979737	T	T	76979737	1	4	14	0	1	0	0	0	0	0	0	0	6390	1305	45	3		3	GDPD4	11	76979737	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	10874403	76979737	58026779	527	31275											
CTSC	1075	broad.mit.edu	37	chr11	88061183	88061183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataatctctccagtcaccCtctgatgaataaataggcat	5	12	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88061183	A	A	88061183	1	1	14	0	1	0	0	0	0	0	0	0	4065	696	24	2		2	CTSC	11	88061183	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	11081446	88061183	46945333	528	31276											
CUL5	8065	broad.mit.edu	37	chr11	107968500	107968500	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtaagctcgttagttgatCtaaaataaaaacaccttgtt	6	6	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107968500	T	T	107968500	1	4	14	0	1	0	0	0	0	0	0	0	4092	928	32	4		4	CUL5	11	107968500	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	19907317	107968500	27038016	529	31277											
SDHD	6392	broad.mit.edu	37	chr11	111959712	111959712	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggactattccctggctgcAgccctcactcttcatggtca	8	14	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111959712	T	T	111959712	2	4	14	1	0	0	0	0	0	0	0	1	14080	175	7	5		5	SDHD	11	111959712	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	3991212	111959712	23046804	530	31278											
DRD2	1813	broad.mit.edu	37	chr11	113286122	113286122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggggacccttggagttGgttggggggtgtcttgagac	20	5	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113286122	T	T	113286122	1	4	14	0	1	0	0	0	0	0	0	0	4797	1363	47	2		2	DRD2	11	113286122	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1326410	113286122	21720394	531	31279											
APOA4	337	broad.mit.edu	37	chr11	116691784	116691784	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacgtcccccgcatggggGcccagtttctgcctgagctg	12	16	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116691784	A	A	116691784	2	1	14	1	0	0	0	0	0	0	0	1	785	1190	42	4		4	APOA4	11	116691784	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	3405662	116691784	18314732	532	31280											
CEP164	22897	broad.mit.edu	37	chr11	117233361	117233361	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtaacataaaatttgccCttttaaccattttaaagtta	3	6	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117233361	T	T	117233361	1	4	14	0	1	0	0	0	0	0	0	0	3279	696	24	4		4	CEP164	11	117233361	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	541577	117233361	17773155	533	31281											
CD3E	916	broad.mit.edu	37	chr11	118184376	118184376	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacctccagcgccttgtgtTttccttgcttagtgatttcc	7	13	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118184376	A	A	118184376	1	1	14	0	1	0	0	0	0	0	0	0	3041	1856	64	5		5	CD3E	11	118184376	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	951015	118184376	16822140	534	31282											
STT3A	3703	broad.mit.edu	37	chr11	125474279	125474279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgggcaggaacggatcttGgacaagctcatgttctcttc	11	9	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125474279	T	T	125474279	1	4	14	0	1	0	0	0	0	0	0	0	15451	1363	47	2		2	STT3A	11	125474279	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	7289903	125474279	9532237	535	31283											
IGSF9B	22997	broad.mit.edu	37	chr11	133789980	133789980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcgagctcaggggagcCggtgcgggagctgagggggc	24	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133789980	A	A	133789980	3	1	14	1	0	0	0	0	1	0	0	0	7676	652	23	1	417	1	IGSF9B	11	133789980	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	8315701	133789980	1216536	536	31284											
IQSEC3	440073	broad.mit.edu	37	chr12	247477	247478	+	Frame_Shift_Del	DEL	GC	-	-													ggcggtcacctggtgtcccgGcgcgccgcttgcaccatcca							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247478	-	-	247477	7	5	14	1	0	1	0	1	0	0	0	0	7889	1190	42	0	962	0	IQSEC3	12	247477	Frame_Shift_Del	DEL	GC	TCGA-05-4405-01A-21D-1855-08		247477	133604418	537	31285											
EFCAB4B	84766	broad.mit.edu	37	chr12	3763466	3763466	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagctcccaggaagtccgctCcagctcccgggccagctcct	11	18	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3763466	A	A	3763466	4	1	14	1	0	0	0	0	0	1	0	0	4977	864	30	3	1473	3	EFCAB4B	12	3763466	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3515989	3763466	130088429	538	31286											
TPI1	7167	broad.mit.edu	37	chr12	6979285	6979285	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcggtggctcagagcaccCgtatcatttatggaggtgag	14	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6979285	T	T	6979285	3	4	14	1	0	0	0	0	1	0	0	0	16527	652	23	4	749	4	TPI1	12	6979285	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3215819	6979285	126872610	539	31287											
ATN1	1822	broad.mit.edu	37	chr12	7048172	7048172	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccctgcggcctgacatgTcctatgctgagcggctggca	13	14	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7048172	A	A	7048172	3	1	14	1	0	0	0	0	1	0	0	0	1115	1667	58	5	3068	5	ATN1	12	7048172	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	68887	7048172	126803723	540	31288											
A2M	2	broad.mit.edu	37	chr12	9243913	9243913	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctggaaggctcggagagAggcagtggaagagataccaa	18	6	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9243913	G	G	9243913	3	3	14	1	0	0	0	0	1	0	0	0	4	304	11	5	2143	5	A2M	12	9243913	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	2195741	9243913	124607982	541	31289											
PZP	5858	broad.mit.edu	37	chr12	9317851	9317851	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctggaaggctcggagagAggcagtggaagagataccaa	18	6	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9317851	G	G	9317851	3	3	14	1	0	0	0	0	1	0	0	0	12977	304	11	5	2149	5	PZP	12	9317851	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	73938	9317851	124534044	542	31290											
CLEC1A	51267	broad.mit.edu	37	chr12	10233927	10233927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggacttgaagagattgCaactcttgggacgtatttcc	10	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10233927	A	A	10233927	3	1	14	1	0	0	0	0	1	0	0	0	3537	709	25	3	558	3	CLEC1A	12	10233927	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	916076	10233927	123617968	543	31291											
PLBD1	79887	broad.mit.edu	37	chr12	14706377	14706378	+	Intron	DNP	CC	AT	AT													agggaataatgacaaaaacgCcattcaaatgagttgtgatg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	14706378	AT	AT	14706377	1	1	14	0	1	0	0	0	0	0	0	0	12120	754	26	3		3	PLBD1	12	14706377	Intron	DNP	CC	TCGA-05-4405-01A-21D-1855-08	4472450	14706377	119145518	544	31292											
GUCY2C	2984	broad.mit.edu	37	chr12	14778522	14778522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgatccacctgcctcagcCtctcaaagtgctaggattac	7	14	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14778522	A	A	14778522	1	1	14	0	1	0	0	0	0	0	0	0	6961	696	24	2		2	GUCY2C	12	14778522	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	72145	14778522	119073373	545	31293											
SLCO1B1	10599	broad.mit.edu	37	chr12	21331534	21331534	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaggaatctgggtcatAcatgtggatatatgtgttca	10	4	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21331534	G	G	21331534	3	3	14	1	0	0	0	0	1	0	0	0	14837	391	14	5	524	5	SLCO1B1	12	21331534	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	6553012	21331534	112520361	546	31294											
SOX5	6660	broad.mit.edu	37	chr12	23818249	23818249	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacttctccacacattctgTgtgtttcctctttaaaataa	3	11	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23818249	C	C	23818249	1	2	14	0	1	0	0	0	0	0	0	0	15068	1711	59	5		5	SOX5	12	23818249	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	2486715	23818249	110033646	547	31295											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	14	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1580036	25398285	108453610	548	31296											
IFLTD1	160492	broad.mit.edu	37	chr12	25699466	25699466	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgattcatcctgtttcttCggaactgagaaggggctggc	14	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25699466	A	A	25699466	2	1	14	1	0	0	0	0	0	0	0	1	7600	871	31	3		3	IFLTD1	12	25699466	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	301181	25699466	108152429	549	31297											
CNTN1	1272	broad.mit.edu	37	chr12	41323638	41323638	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctaaatgaatttcctgtAtttatcacaatggataaacg	5	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41323638	G	G	41323638	2	3	14	1	0	0	0	0	0	0	0	1	3672	436	16	5		5	CNTN1	12	41323638	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	15624172	41323638	92528257	550	31298											
DDN	23109	broad.mit.edu	37	chr12	49391858	49391858	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctcttctttgtgcgCcctccgtctgtcctggctgg	10	16	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49391858	T	T	49391858	2	4	14	1	0	0	0	0	0	0	0	1	4366	726	26	4		4	DDN	12	49391858	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	8068220	49391858	84460037	551	31299											
MCRS1	10445	broad.mit.edu	37	chr12	49952855	49952855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccatggaccagctctgctTcctgcagacaccaaggaatc	8	14	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49952855	A	A	49952855	1	1	14	0	1	0	0	0	0	0	0	0	9492	1798	62	5		5	MCRS1	12	49952855	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	560997	49952855	83899040	552	31300											
KRT71	112802	broad.mit.edu	37	chr12	52944034	52944034	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaggaaccgcacctggaaCccagatcccagaaactgctg	9	15	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52944034	T	T	52944034	1	4	14	0	1	0	0	0	0	0	0	0	8555	522	18	4		4	KRT71	12	52944034	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2991179	52944034	80907861	553	31301											
KRT74	121391	broad.mit.edu	37	chr12	52967091	52967091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcctatgagacccacCttgtcaatgaaggaggcgaa	9	13	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52967091	A	A	52967091	3	1	14	1	0	0	0	0	1	0	0	0	8558	695	24	2	1154	2	KRT74	12	52967091	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	23057	52967091	80884804	554	31302											
KRT3	3850	broad.mit.edu	37	chr12	53187745	53187745	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaaggtgagggggaacTgaatgaaccaagctgtcctt	15	6	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53187745	A	A	53187745	1	1	14	0	1	0	0	0	0	0	0	0	8537	1595	55	5		5	KRT3	12	53187745	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	220654	53187745	80664150	555	31303											
NCKAP1L	3071	broad.mit.edu	37	chr12	54930662	54930662	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagaaattactagtttgggtCatcctggagtggcttacttt	11	6	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54930662	G	G	54930662	1	3	14	0	1	0	0	0	0	0	0	0	10317	841	29	4		4	NCKAP1L	12	54930662	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1742917	54930662	78921233	556	31304											
PPP1R1A	5502	broad.mit.edu	37	chr12	54974908	54974908	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagggaactgcttctcctCactgcacccataccccagtg	10	15	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54974908	T	T	54974908	1	4	14	0	1	0	0	0	0	0	0	0	12468	841	29	4		4	PPP1R1A	12	54974908	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	44246	54974908	78876987	557	31305											
DCD	117159	broad.mit.edu	37	chr12	55041978	55041978	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggggaaatgaaggcagggCccagtcttcaggggactata	15	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55041978	G	G	55041978	1	3	14	0	1	0	0	0	0	0	0	0	4316	754	26	4		4	DCD	12	55041978	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	67070	55041978	78809917	558	31306											
GNS	2799	broad.mit.edu	37	chr12	65130899	65130899	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactgtcctgaaaacaaaAcacacaatgtaaagatggag	7	7	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65130899	G	G	65130899	1	3	14	0	1	0	0	0	0	0	0	0	6614	58	2	5		5	GNS	12	65130899	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	10088921	65130899	68720996	559	31307											
GRIP1	23426	broad.mit.edu	37	chr12	66935843	66935843	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgagaaaagatatttatggCctccttccattgtaatttga	7	6	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66935843	G	G	66935843	1	3	14	0	1	0	0	0	0	0	0	0	6853	754	26	4		4	GRIP1	12	66935843	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1804944	66935843	66916052	560	31308											
TPH2	121278	broad.mit.edu	37	chr12	72372514	72372514	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttcattttcttgaatGttttgttctcctggaaaccg	6	8	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72372514	T	T	72372514	1	4	14	0	1	0	0	0	0	0	0	0	16526	1392	48	3		3	TPH2	12	72372514	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5436671	72372514	61479381	561	31309											
E2F7	144455	broad.mit.edu	37	chr12	77427622	77427622	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggactccatagattaTgcaagggcagataccttgtt	10	8	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77427622	C	C	77427622	1	2	14	0	1	0	0	0	0	0	0	0	4912	1479	51	5		5	E2F7	12	77427622	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	5055108	77427622	56424273	562	31310											
NAV3	89795	broad.mit.edu	37	chr12	78531252	78531252	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaggaaaataaactaGtgtaattatcatttgggaaa	9	3	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78531252	C	C	78531252	1	2	14	0	1	0	0	0	0	0	0	0	10279	1044	36	4		4	NAV3	12	78531252	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1103630	78531252	55320643	563	31311											
C12orf26	84190	broad.mit.edu	37	chr12	82783571	82783571	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttgattctttaatagcAgtttttacttttattttcat	3	4	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82783571	C	C	82783571	1	2	14	0	1	0	0	0	0	0	0	0	1692	203	7	5		5	C12orf26	12	82783571	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	4252319	82783571	51068324	564	31312											
KERA	11081	broad.mit.edu	37	chr12	91449623	91449623	+	Nonsense_Mutation	SNP	G	A	A													atttctagctaattgtaattGttctaaacttcttggcaatg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91449623	A	A	91449623	4	1	14	1	0	0	0	0	0	1	0	0	8213	1386	48	4	630	4	KERA	12	91449623	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	8666052	91449623	42402272	565	31313	183	2									
KERA	11081	broad.mit.edu	37	chr12	91449625	91449625	+	Missense_Mutation	SNP	T	C	C													ttctagctaattgtaattgtTctaaacttcttggcaatgga							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91449625	C	C	91449625	3	2	14	1	0	0	0	0	1	0	0	0	8213	1783	62	5	632	5	KERA	12	91449625	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	2	91449625	42402270	566	31314	183	2									
CCDC41	51134	broad.mit.edu	37	chr12	94794689	94794689	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcttccttctggtgttcAaattctgacttgagaaatgt	7	8	4	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94794689	C	C	94794689	3	2	14	1	0	0	0	0	1	0	0	0	2840	127	5	5	1667	5	CCDC41	12	94794689	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	3345064	94794689	39057206	567	31315											
GAS2L3	283431	broad.mit.edu	37	chr12	101017690	101017690	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatctgggctctatgtcagtCcgttctaaattgccaaattc	7	10	4	0	rs149531123	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101017690	A	A	101017690	2	1	14	1	0	0	0	0	0	0	0	1	6310	842	30	3		3	GAS2L3	12	101017690	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	6223001	101017690	32834205	568	31316											
CCDC53	51019	broad.mit.edu	37	chr12	102433651	102433651	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accaagttagcttaccacttGaaccattttgagatatctgg	7	9	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102433651	C	C	102433651	3	2	14	1	0	0	0	0	1	0	0	0	2851	1299	45	4	97	4	CCDC53	12	102433651	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1415961	102433651	31418244	569	31317											
DAO	1610	broad.mit.edu	37	chr12	109292269	109292269	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagacaatgttgttgatgGagatgacaacattgatggaa	11	4	0	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109292269	T	T	109292269	1	4	14	0	1	0	0	0	0	0	0	0	4264	1189	41	3		3	DAO	12	109292269	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	6858618	109292269	24559626	570	31318											
MVK	4598	broad.mit.edu	37	chr12	110019129	110019129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagtcaggcctgggcctGgcccctggttcagtgctggc	16	12	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110019129	T	T	110019129	1	4	14	0	1	0	0	0	0	0	0	0	10089	1363	47	2		2	MVK	12	110019129	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	726860	110019129	23832766	571	31319											
CUX2	23316	broad.mit.edu	37	chr12	111744579	111744579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtcataagtatacaacaCtttgaatttttcaacacaag	4	8	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111744579	T	T	111744579	1	4	14	0	1	0	0	0	0	0	0	0	4098	580	20	4		4	CUX2	12	111744579	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1725450	111744579	22107316	572	31320											
PLBD2	196463	broad.mit.edu	37	chr12	113812392	113812392	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggttcctgtaagtgccaccCccagagtgaacagggtggga	15	10	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113812392	T	T	113812392	1	4	14	0	1	0	0	0	0	0	0	0	12121	638	22	4		4	PLBD2	12	113812392	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2067813	113812392	20039503	573	31321											
CIT	11113	broad.mit.edu	37	chr12	120128050	120128050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgggggaccgctctctcCgcgtgctgagcatccggccg	14	17	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120128050	A	A	120128050	3	1	14	1	0	0	0	0	1	0	0	0	3469	652	23	1	125	1	CIT	12	120128050	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	6315658	120128050	13723845	574	31322											
FZD10	11211	broad.mit.edu	37	chr12	130647951	130647951	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaggcgcccaacaacggctCggacgagcccacccggggct	15	16	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130647951	G	G	130647951	3	3	14	1	0	0	0	0	1	0	0	0	6189	893	31	4	466	4	FZD10	12	130647951	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	10519901	130647951	3203944	575	31323											
ULK1	8408	broad.mit.edu	37	chr12	132401562	132401562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtttgggacacaagccccgGacccgggcagcacggagagc	15	14	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132401562	T	T	132401562	3	4	14	1	0	0	0	0	1	0	0	0	17101	1174	41	3	2219	3	ULK1	12	132401562	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1753611	132401562	1450333	576	31324											
SACS	26278	broad.mit.edu	37	chr13	23932672	23932672	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagataccagggtgttcTgttctatctcaagagatcct	8	8	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23932672	A	A	23932672	1	1	14	0	1	0	0	0	0	0	0	0	13915	1595	55	5		5	SACS	13	23932672	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08		23932672	91237206	577	31325											
NBEA	26960	broad.mit.edu	37	chr13	35630253	35630253	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgatatggcttggcatgTtaacacaaatgatgtaagtc	11	5	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35630253	G	G	35630253	3	3	14	1	0	0	0	0	1	0	0	0	10281	1725	60	5	1105	5	NBEA	13	35630253	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	11697581	35630253	79539625	578	31326											
SETDB2	83852	broad.mit.edu	37	chr13	50038170	50038170	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaggagcatcacagaaAgaagtgaatgcccaaagcag	10	10	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50038170	C	C	50038170	3	2	14	1	0	0	0	0	1	0	0	0	14252	69	3	5	236	5	SETDB2	13	50038170	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	14407917	50038170	65131708	579	31327											
KLHL1	57626	broad.mit.edu	37	chr13	70281746	70281746	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaagtgaattatgctgatGacaatcttacctgtgtccac	8	8	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70281746	T	T	70281746	1	4	14	0	1	0	0	0	0	0	0	0	8436	1305	45	3		3	KLHL1	13	70281746	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	20243576	70281746	44888132	580	31328											
KLHL1	57626	broad.mit.edu	37	chr13	70456367	70456367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtttacttttaatatagGgtttttcagtacattgaatc	7	4	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70456367	T	T	70456367	1	4	14	0	1	0	0	0	0	0	0	0	8436	1247	43	2		2	KLHL1	13	70456367	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	174621	70456367	44713511	581	31329											
KLHL1	57626	broad.mit.edu	37	chr13	70681538	70681538	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcagcctcgtggcaacTggaagcagggtgccattcag	14	11	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70681538	A	A	70681538	2	1	14	1	0	0	0	0	0	0	0	1	8436	1567	55	5		5	KLHL1	13	70681538	Silent	SNP	T	TCGA-05-4405-01A-21D-1855-08	225171	70681538	44488340	582	31330											
MBNL2	10150	broad.mit.edu	37	chr13	98017264	98017264	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatgtgaatggccctaaaaGactgtgttaactaaccctac	7	10	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98017264	A	A	98017264	1	1	14	0	1	0	0	0	0	0	0	0	9447	957	33	4		4	MBNL2	13	98017264	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	27335726	98017264	17152614	583	31331											
TMTC4	84899	broad.mit.edu	37	chr13	101277998	101277998	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgccggaatgcaggagctCctttctttgtcactagcata	10	10	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101277998	A	A	101277998	1	1	14	0	1	0	0	0	0	0	0	0	16386	870	30	3		3	TMTC4	13	101277998	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3260734	101277998	13891880	584	31332											
MYO16	23026	broad.mit.edu	37	chr13	109507931	109507931	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaattgccttttgcacTgtttttctcttgctgcatat	7	9	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109507931	A	A	109507931	1	1	14	0	1	0	0	0	0	0	0	0	10158	1595	55	5		5	MYO16	13	109507931	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	8229933	109507931	5661947	585	31333											
MYO16	23026	broad.mit.edu	37	chr13	109550505	109550505	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcagtatttgacaacgtGgatttcctgtgccgagccag	12	9	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109550505	A	A	109550505	1	1	14	0	1	0	0	0	0	0	0	0	10158	1363	47	4		4	MYO16	13	109550505	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	42574	109550505	5619373	586	31334											
TFDP1	7027	broad.mit.edu	37	chr13	114290775	114290775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcggtcagcgggtcagccGtcctggctccaccccagtgt	14	15	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114290775	T	T	114290775	1	4	14	0	1	0	0	0	0	0	0	0	15920	1160	40	3		3	TFDP1	13	114290775	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4740270	114290775	879103	587	31335											
DHRS2	10202	broad.mit.edu	37	chr14	24113955	24113955	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagggcaaagctgccctaggTgttctgcctggtggccttcc	13	12	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24113955	A	A	24113955	1	1	14	0	1	0	0	0	0	0	0	0	4530	1711	59	5		5	DHRS2	14	24113955	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08		24113955	83235585	588	31336											
FOXG1	2290	broad.mit.edu	37	chr14	29237565	29237565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccttctccaccgccaaCggcctgagcgtggaccggct	10	18	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237565	A	A	29237565	3	1	14	1	0	0	0	0	1	0	0	0	6067	535	19	3	1082	3	FOXG1	14	29237565	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	5123610	29237565	78111975	589	31337											
FOXG1	2290	broad.mit.edu	37	chr14	29237715	29237715	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctgctccgtcaacctgctCgcgggccagaccagttactt	9	17	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29237715	T	T	29237715	2	4	14	1	0	0	0	0	0	0	0	1	6067	871	31	4		4	FOXG1	14	29237715	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	150	29237715	78111825	590	31338											
SCFD1	23256	broad.mit.edu	37	chr14	31191696	31191696	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaatctgtttgcattTtaggccattgtttttgtggt	8	4	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31191696	G	G	31191696	1	3	14	0	1	0	0	0	0	0	0	0	14001	1856	64	5		5	SCFD1	14	31191696	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	1953981	31191696	76157844	591	31339											
C14orf37	145407	broad.mit.edu	37	chr14	58471747	58471747	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaaactgattaggttttGctgttgttggttccatacct	9	7	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58471747	T	T	58471747	1	4	14	0	1	0	0	0	0	0	0	0	1784	1334	46	3		3	C14orf37	14	58471747	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	27280051	58471747	48877793	592	31340											
KCNH5	27133	broad.mit.edu	37	chr14	63175029	63175029	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcaccctgtgttgagccctGattccgcagctccttctgct	9	15	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63175029	T	T	63175029	3	4	14	1	0	0	0	0	1	0	0	0	8105	1299	45	3	806	3	KCNH5	14	63175029	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	4703282	63175029	44174511	593	31341											
PLEK2	26499	broad.mit.edu	37	chr14	67864299	67864299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagctcttcctcctacCcacaccactttcccaaagag	4	18	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67864299	A	A	67864299	1	1	14	0	1	0	0	0	0	0	0	0	12149	638	22	2		2	PLEK2	14	67864299	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	4689270	67864299	39485241	594	31342											
STON2	85439	broad.mit.edu	37	chr14	81837206	81837206	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggttctagctttttgactgGataacaacacctgaactcat	8	9	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81837206	A	A	81837206	1	1	14	0	1	0	0	0	0	0	0	0	15436	1189	41	4		4	STON2	14	81837206	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	13972907	81837206	25512334	595	31343											
EML1	2009	broad.mit.edu	37	chr14	100375678	100375678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgagtccctgtttttcctAtagtgctctaatgaagctgt	8	10	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100375678	G	G	100375678	1	3	14	0	1	0	0	0	0	0	0	0	5138	464	16	5		5	EML1	14	100375678	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	18538472	100375678	6973862	596	31344											
DLK1	8788	broad.mit.edu	37	chr14	101201115	101201115	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacaaccacatgctgcggaAgaagaagaacctgctgcttc	9	12	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101201115	C	C	101201115	3	2	14	1	0	0	0	0	1	0	0	0	4604	72	3	5	1052	5	DLK1	14	101201115	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	825437	101201115	6148425	597	31345											
DYNC1H1	1778	broad.mit.edu	37	chr14	102452390	102452390	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataccagacccagctgatcCagcgcgtgaaagatgacatt	9	11	0	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102452390	T	T	102452390	4	4	14	1	0	0	0	0	0	1	0	0	4881	595	21	4	1858	4	DYNC1H1	14	102452390	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1251275	102452390	4897150	598	31346											
HERC2	8924	broad.mit.edu	37	chr15	28358497	28358497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccgcaagactccgtcaCgctccctctctacaccaagg	6	17	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28358497	A	A	28358497	1	1	14	0	1	0	0	0	0	0	0	0	7125	551	19	3		3	HERC2	15	28358497	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08		28358497	74172895	599	31347											
TJP1	7082	broad.mit.edu	37	chr15	30024944	30024944	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggagctgcgaagacctctGaatctccagaagtcagcacg	11	11	3	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30024944	A	A	30024944	2	1	14	1	0	0	0	0	0	0	0	1	16052	1281	45	4		4	TJP1	15	30024944	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	1666447	30024944	72506448	600	31348											
CHRNA7	1139	broad.mit.edu	37	chr15	32450697	32450697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacagtgaccatgcgccGcaggacgctctactatggcc	10	15	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32450697	T	T	32450697	3	4	14	1	0	0	0	0	1	0	0	0	3419	1087	38	3	709	3	CHRNA7	15	32450697	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2425753	32450697	70080695	601	31349											
MEIS2	4212	broad.mit.edu	37	chr15	37184485	37184485	+	Missense_Mutation	SNP	G	T	T													gggtgggtagggggtcctccGtgcatcatcatggctgggtg					rs139991974		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37184485	T	T	37184485	3	4	14	1	0	0	0	0	1	0	0	0	9561	1136	40	3	114	3	MEIS2	15	37184485	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	4733788	37184485	65346907	602	31350	184	2									
MEIS2	4212	broad.mit.edu	37	chr15	37184493	37184493	+	Missense_Mutation	SNP	T	G	G													agggggtcctccgtgcatcaTcatggctgggtggtggggat							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37184493	G	G	37184493	3	3	14	1	0	0	0	0	1	0	0	0	9561	1435	50	5	122	5	MEIS2	15	37184493	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	8	37184493	65346899	603	31351	184	2									
RTF1	23168	broad.mit.edu	37	chr15	41767680	41767680	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctttgcttgtactacagtCaacatgcacatttcttggag	8	9	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41767680	T	T	41767680	1	4	14	0	1	0	0	0	0	0	0	0	13832	841	29	4		4	RTF1	15	41767680	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	4583187	41767680	60763712	604	31352											
MGA	23269	broad.mit.edu	37	chr15	42028569	42028569	+	Frame_Shift_Del	DEL	G	-	-													atgccacaatcacttaaggtGggcagcttcatcattgagtt							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42028569	-	-	42028569	7	5	14	1	0	1	0	1	0	0	0	0	9633	1335	47	0	4153	0	MGA	15	42028569	Frame_Shift_Del	DEL	G	TCGA-05-4405-01A-21D-1855-08	260889	42028569	60502823	605	31353											
PLA2G4D	283748	broad.mit.edu	37	chr15	42373659	42373659	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggatatctgcacacacatCcctctgcacccccagacctc	5	19	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42373659	A	A	42373659	1	1	14	0	1	0	0	0	0	0	0	0	12099	870	30	3		3	PLA2G4D	15	42373659	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	345090	42373659	60157733	606	31354											
MAP1A	4130	broad.mit.edu	37	chr15	43821703	43821703	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaatggactcaaggcaggaCcaagtaagtatatcatgaaa	9	7	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43821703	G	G	43821703	3	3	14	1	0	0	0	0	1	0	0	0	9319	507	18	4	8034	4	MAP1A	15	43821703	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1448044	43821703	58709689	607	31355											
SEMA6D	80031	broad.mit.edu	37	chr15	48053382	48053382	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catggcgatcaagacaacagGatcgagaaaactgtgctatg	11	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48053382	A	A	48053382	3	1	14	1	0	0	0	0	1	0	0	0	14155	1174	41	4	324	4	SEMA6D	15	48053382	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	4231679	48053382	54478010	608	31356											
CEP152	22995	broad.mit.edu	37	chr15	49060556	49060556	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaataaacttagtacttaCagaaaataaacatcattttc	3	6	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49060556	A	A	49060556	1	1	14	0	1	0	0	0	0	0	0	0	3278	493	17	3		3	CEP152	15	49060556	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1007174	49060556	53470836	609	31357											
SLC27A2	11001	broad.mit.edu	37	chr15	50489983	50489983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaggttttcaaatctcttTctttggcaaaacgtattggg	8	8	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50489983	C	C	50489983	1	2	14	0	1	0	0	0	0	0	0	0	14640	1798	62	5		5	SLC27A2	15	50489983	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	1429427	50489983	52041409	610	31358											
AP4E1	23431	broad.mit.edu	37	chr15	51294665	51294665	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgtttaactccttttgCattaaatcatttttcacttt	3	8	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51294665	T	T	51294665	1	4	14	0	1	0	0	0	0	0	0	0	754	725	25	4		4	AP4E1	15	51294665	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	804682	51294665	51236727	611	31359											
DMXL2	23312	broad.mit.edu	37	chr15	51829083	51829083	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaacataattatatgattCagtgcaaatagtttacctcc	4	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51829083	T	T	51829083	1	4	14	0	1	0	0	0	0	0	0	0	4635	841	29	4		4	DMXL2	15	51829083	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	534418	51829083	50702309	612	31360											
RSL24D1	51187	broad.mit.edu	37	chr15	55475659	55475659	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgctttaagaggcatcaAttcacaatacagcttctaaa	5	10	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55475659	C	C	55475659	1	2	14	0	1	0	0	0	0	0	0	0	13812	116	4	5		5	RSL24D1	15	55475659	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	3646576	55475659	47055733	613	31361											
SIN3A	25942	broad.mit.edu	37	chr15	75715034	75715034	+	Frame_Shift_Del	DEL	G	-	-													cctgcactggtgcaactggtGgggctggatgagcatgactc							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75715034	-	-	75715034	7	5	14	1	0	1	0	1	0	0	0	0	14438	1348	47	0	3577	0	SIN3A	15	75715034	Frame_Shift_Del	DEL	G	TCGA-05-4405-01A-21D-1855-08	20239375	75715034	26816358	614	31362											
SNUPN	10073	broad.mit.edu	37	chr15	75902273	75902273	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttttccaacagggcacacGaccacaatccattcctgccc	5	17	0	0	rs139633458		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75902273	A	A	75902273	2	1	14	1	0	0	0	0	0	0	0	1	14991	1045	37	4		4	SNUPN	15	75902273	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	187239	75902273	26629119	615	31363											
SGK269	79834	broad.mit.edu	37	chr15	77471865	77471865	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcttagcaacatcagcatCtggaggaatggcataaagct	10	9	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77471865	A	A	77471865	3	1	14	1	0	0	0	0	1	0	0	0	14324	913	32	3	2852	3	SGK269	15	77471865	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1569592	77471865	25059527	616	31364											
IREB2	3658	broad.mit.edu	37	chr15	78770839	78770839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattgtttgagttcaagaGtttgagaccagcctgggcaa	12	6	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78770839	T	T	78770839	1	4	14	0	1	0	0	0	0	0	0	0	7896	1044	36	3		3	IREB2	15	78770839	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1298974	78770839	23760553	617	31365											
ADAMTS7	11173	broad.mit.edu	37	chr15	79051780	79051780	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagcggcgggcaacccGctgatggcctcgggaggggg	19	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79051780	C	C	79051780	3	2	14	1	0	0	0	0	1	0	0	0	271	1086	38	4	20	4	ADAMTS7	15	79051780	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	280941	79051780	23479612	618	31366											
TMC3	342125	broad.mit.edu	37	chr15	81628884	81628884	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaccactgcactccagcctGggcgacagagcaagactctg	10	15	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81628884	C	C	81628884	1	2	14	0	1	0	0	0	0	0	0	0	16109	1363	47	4		4	TMC3	15	81628884	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2577104	81628884	20902508	619	31367											
AGBL1	123624	broad.mit.edu	37	chr15	86790880	86790880	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagagcctgtgactgaccCtgcctttccctttgttttca	9	12	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86790880	G	G	86790880	1	3	14	0	1	0	0	0	0	0	0	0	375	696	24	4		4	AGBL1	15	86790880	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	5161996	86790880	15740512	620	31368											
ACAN	176	broad.mit.edu	37	chr15	89401194	89401194	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaacatctggggtccCtgatctcagtgggcagcctt	13	10	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89401194	A	A	89401194	3	1	14	1	0	0	0	0	1	0	0	0	117	681	24	2	5420	2	ACAN	15	89401194	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2610314	89401194	13130198	621	31369											
RHCG	51458	broad.mit.edu	37	chr15	90019991	90019991	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccctggaactcacctcccAgtagaccgcatcctcaaagc	7	17	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90019991	G	G	90019991	3	3	14	1	0	0	0	0	1	0	0	0	13435	188	7	5	141	5	RHCG	15	90019991	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	618797	90019991	12511401	622	31370											
WDR93	56964	broad.mit.edu	37	chr15	90272193	90272194	+	Intron	DNP	CC	TA	TA													gttttaggaccaagactctgCcagcagctctccttgccagg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	90272194	TA	TA	90272193	1	4	14	0	1	0	0	0	0	0	0	0	17467	754	26	4		4	WDR93	15	90272193	Intron	DNP	CC	TCGA-05-4405-01A-21D-1855-08	252202	90272193	12259199	623	31371											
ANPEP	290	broad.mit.edu	37	chr15	90348375	90348375	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaatgaaggccagcaagtaCgtggacatcttgggcgtggt	14	8	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90348375	G	G	90348375	2	3	14	1	0	0	0	0	0	0	0	1	710	523	19	4		4	ANPEP	15	90348375	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	76182	90348375	12183017	624	31372											
SPATA8	145946	broad.mit.edu	37	chr15	97326876	97326877	+	5'UTR	DNP	GG	TT	TT													ctgggcctcggggaaggaagGgcatgaggaatggccccggc							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	97326877	TT	TT	97326876	1	4	14	0	1	0	0	0	0	0	0	0	15131	1247	43	2		2	SPATA8	15	97326876	5'UTR	DNP	GG	TCGA-05-4405-01A-21D-1855-08	6978501	97326876	5204516	625	31373											
CLCN7	1186	broad.mit.edu	37	chr16	1499152	1499152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggctcagggtcacgtggCcactgccttctctgcagcac	11	16	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1499152	A	A	1499152	1	1	14	0	1	0	0	0	0	0	0	0	3499	754	26	3		3	CLCN7	16	1499152	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08		1499152	88855601	626	31374											
PKD1	5310	broad.mit.edu	37	chr16	2159381	2159382	+	Missense_Mutation	DNP	CT	AA	AA													aaacggggcccggggagcacCtcggggttggccccgccgac							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2159382	AA	AA	2159381	3	1	14	1	0	0	0	0	1	0	0	0	12058	680	24	2	7252	2	PKD1	16	2159381	Missense_Mutation	DNP	CT	TCGA-05-4405-01A-21D-1855-08	660229	2159381	88195372	627	31375											
PKD1	5310	broad.mit.edu	37	chr16	2164306	2164306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccacgtccaccacgtgCtccccctcactgagccacgg	7	21	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2164306	A	A	2164306	3	1	14	1	0	0	0	0	1	0	0	0	12058	796	28	3	10337	3	PKD1	16	2164306	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	4925	2164306	88190447	628	31376											
TRAF7	84231	broad.mit.edu	37	chr16	2225515	2225515	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtctgggacatcgtGggcactgagctgaagttgaa	15	8	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2225515	C	C	2225515	2	2	14	1	0	0	0	0	0	0	0	1	16570	1335	47	4		4	TRAF7	16	2225515	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	61209	2225515	88129238	629	31377											
CREBBP	1387	broad.mit.edu	37	chr16	3781737	3781737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgagtctttccctcctccCggccagaggcacggctgcag	12	16	1	1	rs147033717	by1000genomes	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3781737	A	A	3781737	1	1	14	0	1	0	0	0	0	0	0	0	3893	667	23	1		1	CREBBP	16	3781737	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1556222	3781737	86573016	630	31378											
ADCY9	115	broad.mit.edu	37	chr16	4057537	4057537	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccttggctctctgaccCgatatcaggtatgtcttcaa	8	12	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4057537	A	A	4057537	2	1	14	1	0	0	0	0	0	0	0	1	301	639	23	1		1	ADCY9	16	4057537	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	275800	4057537	86297216	631	31379											
RRN3	54700	broad.mit.edu	37	chr16	15155638	15155638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatgtacaacacgggtgggGagcccacactacttgaagga	13	10	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15155638	A	A	15155638	3	1	14	1	0	0	0	0	1	0	0	0	13795	1174	41	4	40	4	RRN3	16	15155638	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	11098101	15155638	75199115	632	31380											
KIAA0430	9665	broad.mit.edu	37	chr16	15696062	15696062	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttatcattagtgaaaaccTggttaaaaagaaaacgcagc	7	7	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15696062	C	C	15696062	5	2	14	1	0	0	0	0	0	0	1	0	8247	1594	55	5	836	5	KIAA0430	16	15696062	Splice_Site	SNP	T	TCGA-05-4405-01A-21D-1855-08	540424	15696062	74658691	633	31381											
MYH11	4629	broad.mit.edu	37	chr16	15843974	15843974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttctgggagccccagGgtctgggcggcgggcctcac	17	14	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15843974	T	T	15843974	1	4	14	0	1	0	0	0	0	0	0	0	10125	1247	43	2		2	MYH11	16	15843974	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	147912	15843974	74510779	634	31382											
TMC5	79838	broad.mit.edu	37	chr16	19475405	19475405	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctcggaaacccagggacgTgccttgccggtcacccactc	10	17	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19475405	A	A	19475405	1	1	14	0	1	0	0	0	0	0	0	0	16111	1711	59	5		5	TMC5	16	19475405	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	3631431	19475405	70879348	635	31383											
OTOA	146183	broad.mit.edu	37	chr16	21737755	21737755	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catttaaagaatgtctttggGatgagctcttgggcaggcgg	14	6	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21737755	A	A	21737755	1	1	14	0	1	0	0	0	0	0	0	0	11396	1189	41	4		4	OTOA	16	21737755	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2262350	21737755	68616998	636	31384											
UBFD1	56061	broad.mit.edu	37	chr16	23573999	23573999	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaataaatctggaggaaaAgtgagactcacctttaaact	7	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23573999	T	T	23573999	3	4	14	1	0	0	0	0	1	0	0	0	17010	69	3	5	702	5	UBFD1	16	23573999	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	1836244	23573999	66780754	637	31385											
PRKCB	5579	broad.mit.edu	37	chr16	24202456	24202456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgggttgtggacctgaaGgcgaacgtgatatcaaagag	15	6	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24202456	T	T	24202456	3	4	14	1	0	0	0	0	1	0	0	0	12614	1000	35	2	1830	2	PRKCB	16	24202456	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	628457	24202456	66152297	638	31386											
HS3ST4	9951	broad.mit.edu	37	chr16	25944657	25944657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctctaattctctaacaCtcttcctggtgataattggt	6	9	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25944657	A	A	25944657	1	1	14	0	1	0	0	0	0	0	0	0	7434	580	20	3		3	HS3ST4	16	25944657	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1742201	25944657	64410096	639	31387											
TUFM	7284	broad.mit.edu	37	chr16	28856776	28856776	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcctcgtacttcttgaaCttagccccacctccctcagc	4	18	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28856776	T	T	28856776	2	4	14	1	0	0	0	0	0	0	0	1	16897	564	20	4		4	TUFM	16	28856776	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2912119	28856776	61497977	640	31388											
ITGAD	3681	broad.mit.edu	37	chr16	31422283	31422283	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccggggctagggagaggatgGaggggctttgggggccttgg	23	6	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422283	A	A	31422283	1	1	14	0	1	0	0	0	0	0	0	0	7954	1189	41	4		4	ITGAD	16	31422283	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2565507	31422283	58932470	641	31389											
CYLD	1540	broad.mit.edu	37	chr16	50816329	50816329	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgattgggaagaagaaagGcatccagggtcattacaatt	11	5	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50816329	A	A	50816329	3	1	14	1	0	0	0	0	1	0	0	0	4176	1203	42	4	1812	4	CYLD	16	50816329	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	19394046	50816329	39538424	642	31390											
CYLD	1540	broad.mit.edu	37	chr16	50830431	50830431	+	3'UTR	SNP	G	C	C													tacaaataactggggtcatcGggaaaggcaaagaaactgaa							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50830431	C	C	50830431	1	2	14	0	1	0	0	0	0	0	0	0	4176	1131	39	4		4	CYLD	16	50830431	3'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	14102	50830431	39524322	643	31391	185	2									
CYLD	1540	broad.mit.edu	37	chr16	50830433	50830433	+	3'UTR	SNP	G	T	T													caaataactggggtcatcggGaaaggcaaagaaactgaagg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50830433	T	T	50830433	1	4	14	0	1	0	0	0	0	0	0	0	4176	1189	41	3		3	CYLD	16	50830433	3'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	2	50830433	39524320	644	31392	185	2									
SALL1	6299	broad.mit.edu	37	chr16	51174774	51174774	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcccaaagaccttcgcgcaGaacctgcacttgtgtttgaa	8	13	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51174774	A	A	51174774	2	1	14	1	0	0	0	0	0	0	0	1	13921	933	33	4		4	SALL1	16	51174774	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	344341	51174774	39179979	645	31393											
CES1	1066	broad.mit.edu	37	chr16	55862795	55862795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggattcccaggaaaatggcCacaggctgtgcaaatccttc	11	11	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55862795	A	A	55862795	2	1	14	1	0	0	0	0	0	0	0	1	3299	581	21	2		2	CES1	16	55862795	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	4688021	55862795	34491958	646	31394											
HYDIN	54768	broad.mit.edu	37	chr16	70867931	70867931	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctaaggaggaagagggggCgcaggagccccatgcattcc	16	11	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70867931	T	T	70867931	3	4	14	1	0	0	0	0	1	0	0	0	7537	768	27	4	1859	4	HYDIN	16	70867931	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	15005136	70867931	19486822	647	31395											
CALB2	794	broad.mit.edu	37	chr16	71418734	71418734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgcgatcttcacattttacGacaaggtaagagagggagtt	11	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71418734	T	T	71418734	3	4	14	1	0	0	0	0	1	0	0	0	2600	1058	37	3	656	3	CALB2	16	71418734	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	550803	71418734	18936019	648	31396											
FAM92B	339145	broad.mit.edu	37	chr16	85139058	85139058	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggccccagggacacaagaCgtagaaagtgtcatgggggt	15	9	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85139058	T	T	85139058	1	4	14	0	1	0	0	0	0	0	0	0	5710	551	19	4		4	FAM92B	16	85139058	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	13720324	85139058	5215695	649	31397											
DPEP1	1800	broad.mit.edu	37	chr16	89696934	89696934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgatgggtgagtgctcaCctgagccaggtgcttaggga	15	8	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89696934	A	A	89696934	1	1	14	0	1	0	0	0	0	0	0	0	4753	522	18	3		3	DPEP1	16	89696934	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	4557876	89696934	657819	650	31398											
INPP5K	51763	broad.mit.edu	37	chr17	1412844	1412844	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagggatagcaagcccactCtgaggcaaaagaacaaacat	9	10	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1412844	A	A	1412844	1	1	14	0	1	0	0	0	0	0	0	0	7830	928	32	3		3	INPP5K	17	1412844	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08		1412844	79782366	651	31399											
TRPV3	162514	broad.mit.edu	37	chr17	3427383	3427383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcatttgggagaaagagCagtgacctgccccttggtaa	13	8	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3427383	A	A	3427383	1	1	14	0	1	0	0	0	0	0	0	0	16722	725	25	3		3	TRPV3	17	3427383	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2014539	3427383	77767827	652	31400											
ITGAE	3682	broad.mit.edu	37	chr17	3663536	3663536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctctctgaaagtctgggGgatcaatgcttcctgagcca	12	10	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3663536	T	T	3663536	3	4	14	1	0	0	0	0	1	0	0	0	7955	1232	43	2	2995	2	ITGAE	17	3663536	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	236153	3663536	77531674	653	31401											
ATP2A3	489	broad.mit.edu	37	chr17	3831394	3831394	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggcaggtggatggacccCatgtcccagcccacttctct	11	14	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3831394	T	T	3831394	1	4	14	0	1	0	0	0	0	0	0	0	1142	609	21	4		4	ATP2A3	17	3831394	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	167858	3831394	77363816	654	31402											
CAMTA2	23125	broad.mit.edu	37	chr17	4884585	4884585	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttgggtgggtgtccaaaAtctgctgcaccaggtgttct	14	8	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4884585	G	G	4884585	3	3	14	1	0	0	0	0	1	0	0	0	2640	101	4	5	3087	5	CAMTA2	17	4884585	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	1053191	4884585	76310625	655	31403											
NUP88	4927	broad.mit.edu	37	chr17	5308400	5308400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcatcttcttcttcccCttctagcacgacacagtgat	7	13	5	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5308400	A	A	5308400	3	1	14	1	0	0	0	0	1	0	0	0	10866	681	24	2	1252	2	NUP88	17	5308400	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	423815	5308400	75886810	656	31404											
TP53	7157	broad.mit.edu	37	chr17	7577108	7577108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccggtctctcccaggaCaggcacaaacacgcacctca	9	17	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577108	A	A	7577108	3	1	14	1	0	0	0	0	1	0	0	0	16505	478	17	3	456	3	TP53	17	7577108	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2268708	7577108	73618102	657	31405											
TP53	7157	broad.mit.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0	rs28934578		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578406	T	T	7578406	3	4	14	1	0	0	0	0	1	0	0	0	16505	768	27	4	774	4	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1298	7578406	73616804	658	31406											
CHD3	1107	broad.mit.edu	37	chr17	7812156	7812156	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggaggttcaaggtgggaatGagggaggaaaggagcgggtt	21	3	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7812156	C	C	7812156	1	2	14	0	1	0	0	0	0	0	0	0	3357	1305	45	4		4	CHD3	17	7812156	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	233750	7812156	73383054	659	31407											
AURKB	9212	broad.mit.edu	37	chr17	8110861	8110861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcattgtcccctcaccccCgtccacccccaggcttgggg	9	19	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8110861	A	A	8110861	1	1	14	0	1	0	0	0	0	0	0	0	1228	667	23	1		1	AURKB	17	8110861	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	298705	8110861	73084349	660	31408											
WDR16	146845	broad.mit.edu	37	chr17	9538752	9538752	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagataggctgtcagaccCagaagctggaggaggccctg	16	10	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9538752	T	T	9538752	4	4	14	1	0	0	0	0	0	1	0	0	17403	595	21	4	1393	4	WDR16	17	9538752	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1427891	9538752	71656458	661	31409											
MYH13	8735	broad.mit.edu	37	chr17	10235579	10235579	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaaatggattccaatcccCgaaaggcttcatagctgaga	8	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10235579	G	G	10235579	1	3	14	0	1	0	0	0	0	0	0	0	10126	667	23	4		4	MYH13	17	10235579	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	696827	10235579	70959631	662	31410											
MYH4	4622	broad.mit.edu	37	chr17	10358324	10358324	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatatggcttgagtgcgcGtgatgagttgagctagcttt	14	6	0	4	rs143572602	byFrequency	TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10358324	A	A	10358324	3	1	14	1	0	0	0	0	1	0	0	0	10131	1145	40	4	3530	4	MYH4	17	10358324	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	122745	10358324	70836886	663	31411											
MYH1	4619	broad.mit.edu	37	chr17	10408600	10408600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctaggagccccagaagaCcagctttgaaaaagacctat	8	12	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10408600	A	A	10408600	3	1	14	1	0	0	0	0	1	0	0	0	10123	507	18	3	3584	3	MYH1	17	10408600	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	50276	10408600	70786610	664	31412											
MYH2	4620	broad.mit.edu	37	chr17	10443453	10443453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttaatactgcacattcCcattgctggcctgaggaaac	8	11	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10443453	A	A	10443453	1	1	14	0	1	0	0	0	0	0	0	0	10129	638	22	2		2	MYH2	17	10443453	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	34853	10443453	70751757	665	31413											
MYH3	4621	broad.mit.edu	37	chr17	10533474	10533474	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaacagactctgtgttctTcttctgctctccctcaagtt	5	13	6	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10533474	G	G	10533474	3	3	14	1	0	0	0	0	1	0	0	0	10130	1792	62	5	341	5	MYH3	17	10533474	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	90021	10533474	70661736	666	31414											
PIGL	9487	broad.mit.edu	37	chr17	16203297	16203297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatggcatcaatctggtaaGggggcagctccctgaatgga	14	8	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16203297	T	T	16203297	1	4	14	0	1	0	0	0	0	0	0	0	11986	1015	35	2		2	PIGL	17	16203297	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5669823	16203297	64991913	667	31415											
MPRIP	23164	broad.mit.edu	37	chr17	17080454	17080454	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaacaagcctcctcttcCgcccacagcaagcctcccta	7	18	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17080454	T	T	17080454	1	4	14	0	1	0	0	0	0	0	0	0	9837	667	23	4		4	MPRIP	17	17080454	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	877157	17080454	64114756	668	31416											
DRG2	1819	broad.mit.edu	37	chr17	18002385	18002385	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaatcattgaaggcgcaGcccaaggtgggaggcagggc	17	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18002385	A	A	18002385	3	1	14	1	0	0	0	0	1	0	0	0	4802	971	34	4	384	4	DRG2	17	18002385	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	921931	18002385	63192825	669	31417											
TOP3A	7156	broad.mit.edu	37	chr17	18206059	18206059	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaacacaaggtgttacCaaggtcaaagtcaaatcaca	8	9	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18206059	G	G	18206059	1	3	14	0	1	0	0	0	0	0	0	0	16491	609	21	4		4	TOP3A	17	18206059	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	203674	18206059	62989151	670	31418											
ZNF286B	729288	broad.mit.edu	37	chr17	18566444	18566444	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttggaaaaatcttgcacTgaagttgaatccttgctctg	9	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18566444	G	G	18566444	2	3	14	1	0	0	0	0	0	0	0	1	17950	1567	55	5		5	ZNF286B	17	18566444	Silent	SNP	T	TCGA-05-4405-01A-21D-1855-08	360385	18566444	62628766	671	31419											
MAPK7	5598	broad.mit.edu	37	chr17	19283155	19283155	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtgaccaatgccaagcGgaccctcagggagctgaaga	14	10	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19283155	A	A	19283155	3	1	14	1	0	0	0	0	1	0	0	0	9374	1116	39	4	299	4	MAPK7	17	19283155	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	716711	19283155	61912055	672	31420											
MAP2K3	5606	broad.mit.edu	37	chr17	21216886	21216886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcctgccctgctcttcaGggctggctggggctgggtgg	19	11	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21216886	T	T	21216886	1	4	14	0	1	0	0	0	0	0	0	0	9330	1015	35	2		2	MAP2K3	17	21216886	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1933731	21216886	59978324	673	31421											
KSR1	8844	broad.mit.edu	37	chr17	25930942	25930942	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctaggtggtgtccccttCgcttctttggggaattatta	10	10	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25930942	A	A	25930942	1	1	14	0	1	0	0	0	0	0	0	0	8653	899	31	3		3	KSR1	17	25930942	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	4714056	25930942	55264268	674	31422											
SARM1	23098	broad.mit.edu	37	chr17	26715397	26715397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcacctgcagctgcatGgcttcagtgtcttcattgat	11	10	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26715397	T	T	26715397	3	4	14	1	0	0	0	0	1	0	0	0	13954	1348	47	2	1786	2	SARM1	17	26715397	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	784455	26715397	54479813	675	31423											
SUPT6H	6830	broad.mit.edu	37	chr17	27009025	27009026	+	Intron	DNP	GG	TT	TT													gctagctgctttgggatttaGgcattctagcctgagcaagg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	27009026	TT	TT	27009025	1	4	14	0	1	0	0	0	0	0	0	0	15518	1015	35	2		2	SUPT6H	17	27009025	Intron	DNP	GG	TCGA-05-4405-01A-21D-1855-08	293628	27009025	54186185	676	31424											
SUPT6H	6830	broad.mit.edu	37	chr17	27009765	27009766	+	Missense_Mutation	DNP	GG	TC	TC													atggcctggccaaaaagtttGggcttactcccgagcagttt							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	27009766	TC	TC	27009765	3	4	14	1	0	0	0	0	1	0	0	0	15518	1348	47	2	1668	2	SUPT6H	17	27009765	Missense_Mutation	DNP	GG	TCGA-05-4405-01A-21D-1855-08	740	27009765	54185445	677	31425											
MYO18A	399687	broad.mit.edu	37	chr17	27401671	27401671	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagaagaaggtcagggtGtttcccatgcagatcagcag	13	8	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27401671	T	T	27401671	1	4	14	0	1	0	0	0	0	0	0	0	10159	1392	48	3		3	MYO18A	17	27401671	3'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	391906	27401671	53793539	678	31426											
SLFN12L	342615	broad.mit.edu	37	chr17	33817332	33817332	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagctgcactaagaagtccaGatactccaaaaactccaaaa	6	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33817332	C	C	33817332	1	2	14	0	1	0	0	0	0	0	0	0	14849	957	33	4		4	SLFN12L	17	33817332	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	6415661	33817332	47377878	679	31427											
CCL4	6351	broad.mit.edu	37	chr17	34432750	34432750	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaggtcacctgagcccGgatgcttctccatgagacac	12	12	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34432750	T	T	34432750	1	4	14	0	1	0	0	0	0	0	0	0	2932	1131	39	1		1	CCL4	17	34432750	3'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	615418	34432750	46762460	680	31428											
FKBP10	60681	broad.mit.edu	37	chr17	39978385	39978385	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggaaaaaagaagaaaaaGaaagcactcactggcctcca	9	9	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39978385	T	T	39978385	1	4	14	0	1	0	0	0	0	0	0	0	5959	957	33	3		3	FKBP10	17	39978385	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5545635	39978385	41216825	681	31429											
DBF4B	80174	broad.mit.edu	37	chr17	42811535	42811535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaaagaagccagaggtaGgtcatcctgctgaactgaag	12	9	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42811535	T	T	42811535	1	4	14	0	1	0	0	0	0	0	0	0	4282	1015	35	2		2	DBF4B	17	42811535	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2833150	42811535	38383675	682	31430											
PHB	5245	broad.mit.edu	37	chr17	47486894	47486894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accactgtaggaaaacaagtGttttttttttgttttttttt	6	4	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47486894	T	T	47486894	1	4	14	0	1	0	0	0	0	0	0	0	11909	1392	48	3		3	PHB	17	47486894	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4675359	47486894	33708316	683	31431											
SGCA	6442	broad.mit.edu	37	chr17	48245884	48245884	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctcaacgtcacctctgccTtggaccgtgggggccgtgtc	13	14	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48245884	A	A	48245884	3	1	14	1	0	0	0	0	1	0	0	0	14312	1606	56	5	553	5	SGCA	17	48245884	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	758990	48245884	32949326	684	31432											
CACNA1G	8913	broad.mit.edu	37	chr17	48681816	48681816	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgggcatttcaaagaaAagtgggagcctagaggaagg	14	7	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48681816	T	T	48681816	1	4	14	0	1	0	0	0	0	0	0	0	2570	29	1	5		5	CACNA1G	17	48681816	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	435932	48681816	32513394	685	31433											
WFIKKN2	124857	broad.mit.edu	37	chr17	48917075	48917076	+	Missense_Mutation	DNP	CA	AG	AG													gaccgctgtgagaaggagccCagctttacctgcgcctcgga							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	48917076	AG	AG	48917075	3	1	14	1	0	0	0	0	1	0	0	0	17486	581	21	2	432	2	WFIKKN2	17	48917075	Missense_Mutation	DNP	CA	TCGA-05-4405-01A-21D-1855-08	235259	48917075	32278135	686	31434											
CA10	56934	broad.mit.edu	37	chr17	49731116	49731116	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctggcaggagggaaaaacAagaatcagaacaataatcca	9	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49731116	C	C	49731116	1	2	14	0	1	0	0	0	0	0	0	0	2537	145	5	5		5	CA10	17	49731116	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	814041	49731116	31464094	687	31435											
PCTP	58488	broad.mit.edu	37	chr17	53848679	53848679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctgattcttgcagcaGcatttgctaaagatattgct	8	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53848679	T	T	53848679	1	4	14	0	1	0	0	0	0	0	0	0	11701	986	34	3		3	PCTP	17	53848679	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4117563	53848679	27346531	688	31436											
SEPT4	5414	broad.mit.edu	37	chr17	56598633	56598633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttccacgatgccccaggGgtagagtcgaccccgaactc	10	16	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56598633	A	A	56598633	3	1	14	1	0	0	0	0	1	0	0	0	14179	1232	43	4	356	4	SEPT4	17	56598633	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2749954	56598633	24596577	689	31437											
C17orf47	284083	broad.mit.edu	37	chr17	56620571	56620571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccaacctcgctgtttcctCggattggggtcctcacgttg	12	13	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56620571	A	A	56620571	3	1	14	1	0	0	0	0	1	0	0	0	1874	884	31	3	743	3	C17orf47	17	56620571	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	21938	56620571	24574639	690	31438											
TEX14	56155	broad.mit.edu	37	chr17	56688569	56688569	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcctcgcttcacctggggaGatgatatggacagcatagga	13	9	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56688569	T	T	56688569	2	4	14	1	0	0	0	0	0	0	0	1	15900	932	33	3		3	TEX14	17	56688569	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	67998	56688569	24506641	691	31439											
RAD51C	5889	broad.mit.edu	37	chr17	56774181	56774181	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttgctactgcctgcattCagcaccttcagcttatagca	6	14	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56774181	T	T	56774181	4	4	14	1	0	0	0	0	0	1	0	0	13096	827	29	4	546	4	RAD51C	17	56774181	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	85612	56774181	24421029	692	31440											
TLK2	11011	broad.mit.edu	37	chr17	60598335	60598335	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgaggctgggagttggagAccagcctgggcaacatagtg	16	8	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60598335	T	T	60598335	1	4	14	0	1	0	0	0	0	0	0	0	16067	290	10	5		5	TLK2	17	60598335	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	3824154	60598335	20596875	693	31441											
KCNH6	81033	broad.mit.edu	37	chr17	61613003	61613003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagggctgaccccagcCctgtgaccatttccctaccc	7	18	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61613003	A	A	61613003	1	1	14	0	1	0	0	0	0	0	0	0	8106	638	22	2		2	KCNH6	17	61613003	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1014668	61613003	19582207	694	31442											
PRKCA	5578	broad.mit.edu	37	chr17	64728940	64728940	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggaaaggggagttttggAaaggtaagaggacagtcgtc	17	3	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64728940	G	G	64728940	2	3	14	1	0	0	0	0	0	0	0	1	12613	233	9	5		5	PRKCA	17	64728940	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	3115937	64728940	16466270	695	31443											
SDK2	54549	broad.mit.edu	37	chr17	71394502	71394502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgggcacctccatggagcGggcatcgggctcattggaga	16	11	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71394502	T	T	71394502	3	4	14	1	0	0	0	0	1	0	0	0	14082	1116	39	1	3450	1	SDK2	17	71394502	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	6665562	71394502	9800708	696	31444											
KIF19	124602	broad.mit.edu	37	chr17	72348838	72348838	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccaaacacaagcccactGcccttctggggctcccaggc	9	18	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72348838	A	A	72348838	1	1	14	0	1	0	0	0	0	0	0	0	8352	1334	46	4		4	KIF19	17	72348838	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	954336	72348838	8846372	697	31445											
FDXR	2232	broad.mit.edu	37	chr17	72859251	72859251	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccaggcctggggccagagGggagcaacccagccttcagg	16	13	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72859251	A	A	72859251	3	1	14	1	0	0	0	0	1	0	0	0	5864	1232	43	4	191	4	FDXR	17	72859251	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	510413	72859251	8335959	698	31446											
FBF1	85302	broad.mit.edu	37	chr17	73910944	73910944	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcggagaactccgcccactCggcagccaggcgccgccgct	13	19	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73910944	A	A	73910944	4	1	14	1	0	0	0	0	0	1	0	0	5752	893	31	3	772	3	FBF1	17	73910944	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1051693	73910944	7284266	699	31447											
SEC14L1	6397	broad.mit.edu	37	chr17	75208256	75208256	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcatggtggagtcgcctctGatctgcaaagaaggagaaag	14	7	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75208256	T	T	75208256	2	4	14	1	0	0	0	0	0	0	0	1	14094	1277	45	3		3	SEC14L1	17	75208256	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	1297312	75208256	5986954	700	31448											
NARF	26502	broad.mit.edu	37	chr17	80445829	80445829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagcccagactccagaCggacatgcggataaggccct	12	14	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80445829	A	A	80445829	3	1	14	1	0	0	0	0	1	0	0	0	10261	535	19	3	1351	3	NARF	17	80445829	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	5237573	80445829	749381	701	31449											
CDH2	1000	broad.mit.edu	37	chr18	25543583	25543583	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactcagaacacatagaaatGaggaaaatttaacataatgg	7	5	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25543583	C	C	25543583	1	2	14	0	1	0	0	0	0	0	0	0	3135	1305	45	4		4	CDH2	18	25543583	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08		25543583	52533665	702	31450											
FHOD3	80206	broad.mit.edu	37	chr18	34298456	34298456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgttcaacgctcctcaGggcttagggtggtcccaggt	13	12	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34298456	T	T	34298456	3	4	14	1	0	0	0	0	1	0	0	0	5940	991	35	2	2732	2	FHOD3	18	34298456	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	8754873	34298456	43778792	703	31451											
FHOD3	80206	broad.mit.edu	37	chr18	34324019	34324019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgtttgagttaagctacCtcgagaaggttccagaagtc	11	8	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34324019	A	A	34324019	3	1	14	1	0	0	0	0	1	0	0	0	5940	681	24	2	3457	2	FHOD3	18	34324019	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	25563	34324019	43753229	704	31452											
MBD1	4152	broad.mit.edu	37	chr18	47796222	47796222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattagatgcaaagacaacaGccttacagagactgtttaac	7	9	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47796222	T	T	47796222	1	4	14	0	1	0	0	0	0	0	0	0	9434	986	34	3		3	MBD1	18	47796222	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	13472203	47796222	30281026	705	31453											
ALPK2	115701	broad.mit.edu	37	chr18	56196188	56196188	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgatatttagtcttttttAatattgtggatgtggaatct	8	4	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56196188	G	G	56196188	1	3	14	0	1	0	0	0	0	0	0	0	545	377	13	5		5	ALPK2	18	56196188	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	8399966	56196188	21881060	706	31454											
RNF152	220441	broad.mit.edu	37	chr18	59483224	59483224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagcttttcaccacgcccCgcctgtcctgctcctcctcc	7	20	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59483224	T	T	59483224	3	4	14	1	0	0	0	0	1	0	0	0	13564	652	23	4	142	4	RNF152	18	59483224	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3287036	59483224	18594024	707	31455											
SERPINB5	5268	broad.mit.edu	37	chr18	61160414	61160414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggggcataaatccattcCaatgaggaacctgagggcac	12	9	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61160414	A	A	61160414	1	1	14	0	1	0	0	0	0	0	0	0	14217	609	21	2		2	SERPINB5	18	61160414	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1677190	61160414	16916834	708	31456											
CDC34	997	broad.mit.edu	37	chr19	535739	535739	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctcacacacaccctcagGcaccagcactgggagtggga	10	16	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	535739	C	C	535739	1	2	14	0	1	0	0	0	0	0	0	0	3097	1218	42	4		4	CDC34	19	535739	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08		535739	58593244	709	31457											
ABCA7	10347	broad.mit.edu	37	chr19	1046443	1046443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccgctcttccccgcggcGggaaggtcccgggtgtgggg	17	15	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1046443	T	T	1046443	1	4	14	0	1	0	0	0	0	0	0	0	37	1131	39	1		1	ABCA7	19	1046443	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	510704	1046443	58082540	710	31458											
MEX3D	399664	broad.mit.edu	37	chr19	1556669	1556669	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccaccagccccaccacCcggtagggcacgcgcacctg	9	22	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1556669	A	A	1556669	2	1	14	1	0	0	0	0	0	0	0	1	9605	610	22	2		2	MEX3D	19	1556669	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	510226	1556669	57572314	711	31459											
SGTA	6449	broad.mit.edu	37	chr19	2762622	2762622	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacggcctccacgtgcttgTtgaggctggagagcgccagg	15	13	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2762622	C	C	2762622	3	2	14	1	0	0	0	0	1	0	0	0	14338	1725	60	5	443	5	SGTA	19	2762622	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1205953	2762622	56366361	712	31460											
SGTA	6449	broad.mit.edu	37	chr19	2769172	2769172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccctaactagctgggCctcactttaagggtgctggc	11	14	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2769172	A	A	2769172	1	1	14	0	1	0	0	0	0	0	0	0	14338	754	26	3		3	SGTA	19	2769172	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	6550	2769172	56359811	713	31461											
ZNF556	80032	broad.mit.edu	37	chr19	2877918	2877918	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctataagtgtggaaaatgcgGgaaagcattcggttggccct	13	7	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2877918	A	A	2877918	3	1	14	1	0	0	0	0	1	0	0	0	18114	1232	43	4	976	4	ZNF556	19	2877918	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	108746	2877918	56251065	714	31462											
ZNF77	58492	broad.mit.edu	37	chr19	2934603	2934603	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataggagggctttggcaggaGaggcagctgcaggcttgccc	17	9	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2934603	C	C	2934603	2	2	14	1	0	0	0	0	0	0	0	1	18271	929	33	4		4	ZNF77	19	2934603	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	56685	2934603	56194380	715	31463											
ZFR2	23217	broad.mit.edu	37	chr19	3834766	3834766	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctggtcaaagaaaggactgGatacctggtaggtagccatg	14	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3834766	T	T	3834766	1	4	14	0	1	0	0	0	0	0	0	0	17786	1189	41	3		3	ZFR2	19	3834766	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	900163	3834766	55294217	716	31464											
EEF2	1938	broad.mit.edu	37	chr19	3985484	3985484	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgacgtcaacactcagcTttttataggcggacgccggt	11	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3985484	G	G	3985484	1	3	14	0	1	0	0	0	0	0	0	0	4969	1624	56	5		5	EEF2	19	3985484	5'Flank	SNP	T	TCGA-05-4405-01A-21D-1855-08	150718	3985484	55143499	717	31465											
TMEM146	257062	broad.mit.edu	37	chr19	5748290	5748290	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtagccgacccactgctagCcaagaaatatttagacctgg	9	12	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5748290	T	T	5748290	1	4	14	0	1	0	0	0	0	0	0	0	16183	754	26	4		4	TMEM146	19	5748290	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1762806	5748290	53380693	718	31466											
RANBP3	8498	broad.mit.edu	37	chr19	5918634	5918634	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggatcagtcgcaggctcCcctgggtccgcatcactaca	11	14	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5918634	T	T	5918634	3	4	14	1	0	0	0	0	1	0	0	0	13137	623	22	4	369	4	RANBP3	19	5918634	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	170344	5918634	53210349	719	31467											
VAV1	7409	broad.mit.edu	37	chr19	6825072	6825072	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttccccgcagcatttcttGaagcccctgcaacggttcct	7	17	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6825072	C	C	6825072	3	2	14	1	0	0	0	0	1	0	0	0	17258	1281	45	4	689	4	VAV1	19	6825072	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	906438	6825072	52303911	720	31468											
MYO1F	4542	broad.mit.edu	37	chr19	8642129	8642129	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggtcatttttaggacAcctccacctggctggtgtcc	10	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8642129	T	T	8642129	1	4	14	0	1	0	0	0	0	0	0	0	10167	174	6	5		5	MYO1F	19	8642129	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1817057	8642129	50486854	721	31469											
MUC16	94025	broad.mit.edu	37	chr19	9027477	9027477	+	Intron	DEL	G	-	-													gacttatgggtttatgaggaGgggcagctcctgctttgctt							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9027477	-	-	9027477	6	5	14	0	1	1	0	1	0	0	0	0	10067	1015	35	0		0	MUC16	19	9027477	Intron	DEL	G	TCGA-05-4405-01A-21D-1855-08	385348	9027477	50101506	722	31470											
MUC16	94025	broad.mit.edu	37	chr19	9047244	9047244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccagaactgatgaccaGtgaggtcagcatctttgatg	11	9	2	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9047244	T	T	9047244	3	4	14	1	0	0	0	0	1	0	0	0	10067	1020	36	3	9456	3	MUC16	19	9047244	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	19767	9047244	50081739	723	31471											
MUC16	94025	broad.mit.edu	37	chr19	9091786	9091786	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagcgggtgggagaagatGacccaggaaggcctgagggt	20	6	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9091786	T	T	9091786	4	4	14	1	0	0	0	0	0	1	0	0	10067	1294	45	3	43830	3	MUC16	19	9091786	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	44542	9091786	50037197	724	31472											
SYCE2	256126	broad.mit.edu	37	chr19	13030145	13030145	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctggccagctgcgctcccGcggacgagtgtgttgtgacg	15	14	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13030145	C	C	13030145	1	2	14	0	1	0	0	0	0	0	0	0	15548	1102	38	4		4	SYCE2	19	13030145	5'Flank	SNP	G	TCGA-05-4405-01A-21D-1855-08	3938359	13030145	46098838	725	31473											
FARSA	2193	broad.mit.edu	37	chr19	13041475	13041475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaatgcttcgaaacacaCgggcctcatggctgccctcc	12	14	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13041475	A	A	13041475	3	1	14	1	0	0	0	0	1	0	0	0	5736	536	19	3	1338	3	FARSA	19	13041475	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	11330	13041475	46087508	726	31474											
EMR3	84658	broad.mit.edu	37	chr19	14762138	14762138	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaagaggctgaggcagaagGattgcttgggcccaggaatt	15	7	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14762138	A	A	14762138	1	1	14	0	1	0	0	0	0	0	0	0	5148	1189	41	4		4	EMR3	19	14762138	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1720663	14762138	44366845	727	31475											
CPAMD8	27151	broad.mit.edu	37	chr19	17057956	17057956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcctccccgggggccaCacacatcttcttggtcacat	8	17	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17057956	A	A	17057956	3	1	14	1	0	0	0	0	1	0	0	0	3827	478	17	3	3155	3	CPAMD8	19	17057956	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2295818	17057956	42071027	728	31476											
MAST3	23031	broad.mit.edu	37	chr19	18256519	18256519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccccagatgtggggcccaGgccattgaccccaccgttct	11	16	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18256519	T	T	18256519	1	4	14	0	1	0	0	0	0	0	0	0	9418	1015	35	2		2	MAST3	19	18256519	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1198563	18256519	40872464	729	31477											
DDX49	54555	broad.mit.edu	37	chr19	19030529	19030529	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgggcccctacaagggGcccctacaagcggccacaag	11	17	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19030529	T	T	19030529	1	4	14	0	1	0	0	0	0	0	0	0	4399	1218	42	3		3	DDX49	19	19030529	5'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	774010	19030529	40098454	730	31478											
CILP2	148113	broad.mit.edu	37	chr19	19654969	19654969	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacgctgtccgggtcttgCcttttgatcctcgaggtgcc	13	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19654969	T	T	19654969	3	4	14	1	0	0	0	0	1	0	0	0	3461	739	26	4	1645	4	CILP2	19	19654969	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	624440	19654969	39474014	731	31479											
ZNF208	7757	broad.mit.edu	37	chr19	22154156	22154156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttgccacattcttcaCatttgtagggtttctctcca	7	11	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22154156	A	A	22154156	3	1	14	1	0	0	0	0	1	0	0	0	17892	478	17	3	166	3	ZNF208	19	22154156	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2499187	22154156	36974827	732	31480											
ZNF208	7757	broad.mit.edu	37	chr19	22155846	22155846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattctttacatttgtaggGcttctctccagcatgaattg	7	9	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22155846	T	T	22155846	3	4	14	1	0	0	0	0	1	0	0	0	17892	1203	42	3	1856	3	ZNF208	19	22155846	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1690	22155846	36973137	733	31481											
ZNF257	113835	broad.mit.edu	37	chr19	22255608	22255608	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctgtgtttgtgtgtttttCagggaccactgacaattagg	12	6	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22255608	A	A	22255608	1	1	14	0	1	0	0	0	0	0	0	0	17926	841	29	3		3	ZNF257	19	22255608	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	99762	22255608	36873375	734	31482											
ZNF98	148198	broad.mit.edu	37	chr19	22574230	22574230	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttttgccacactgttcacActtgtagaagttttctccag	7	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22574230	G	G	22574230	1	3	14	0	1	0	0	0	0	0	0	0	18332	174	6	5		5	ZNF98	19	22574230	3'UTR	SNP	A	TCGA-05-4405-01A-21D-1855-08	318622	22574230	36554753	735	31483											
ZNF98	148198	broad.mit.edu	37	chr19	22575688	22575688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaactgtaaattttcacGtccacattttttatatgttc	3	8	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22575688	T	T	22575688	3	4	14	1	0	0	0	0	1	0	0	0	18332	1145	40	3	1373	3	ZNF98	19	22575688	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1458	22575688	36553295	736	31484											
SLC7A9	11136	broad.mit.edu	37	chr19	33355102	33355103	+	Frame_Shift_Ins	INS	-	C	C													agaagctgaggcagatgatgINSgcgaaggacgtgggcttaat							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33355103	C	C	33355102	7	5	14	1	0	1	1	0	0	0	0	0	14819	1335	47	0	1125	0	SLC7A9	19	33355102	Frame_Shift_Ins	INS	-	TCGA-05-4405-01A-21D-1855-08	10779414	33355102	25773881	737	31485											
WDR62	284403	broad.mit.edu	37	chr19	36581311	36581311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtggtggggtaggcggGgccctgttggccgcaacatg	20	8	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36581311	T	T	36581311	1	4	14	0	1	0	0	0	0	0	0	0	17440	1247	43	2		2	WDR62	19	36581311	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3226209	36581311	22547672	738	31486											
RYR1	6261	broad.mit.edu	37	chr19	38948237	38948237	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctggccgtgagcttcTgctgcagacaaacctcatca	10	14	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38948237	A	A	38948237	3	1	14	1	0	0	0	0	1	0	0	0	13879	1580	55	5	1958	5	RYR1	19	38948237	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	2366926	38948237	20180746	739	31487											
RYR1	6261	broad.mit.edu	37	chr19	38991553	38991553	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggaccgtgtgtatggcatcGagaaccaggacttcttgctg	13	9	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38991553	C	C	38991553	3	2	14	1	0	0	0	0	1	0	0	0	13879	1059	37	4	7723	4	RYR1	19	38991553	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	43316	38991553	20137430	740	31488											
CD177	57126	broad.mit.edu	37	chr19	43857967	43857967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctggaggccgggcaagGgaaccctgctgagatggatt	15	10	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43857967	T	T	43857967	1	4	14	0	1	0	0	0	0	0	0	0	3001	1247	43	2		2	CD177	19	43857967	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4866414	43857967	15271016	741	31489											
CADM4	199731	broad.mit.edu	37	chr19	44130001	44130001	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggagtccaagtccctggtCcctgttcttccaggtcccca	9	16	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44130001	T	T	44130001	1	4	14	0	1	0	0	0	0	0	0	0	2595	870	30	4		4	CADM4	19	44130001	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	272034	44130001	14998982	742	31490											
ZNF180	7733	broad.mit.edu	37	chr19	44981270	44981270	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgcaataagtttatagctCtggataaatgatttcccaca	7	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44981270	G	G	44981270	3	3	14	1	0	0	0	0	1	0	0	0	17874	912	32	4	654	4	ZNF180	19	44981270	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	851269	44981270	14147713	743	31491											
RELB	5971	broad.mit.edu	37	chr19	45529040	45529040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggattgcccttggctgcaGgtgtcagaatgtcccgctta	12	10	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45529040	T	T	45529040	1	4	14	0	1	0	0	0	0	0	0	0	13325	1015	35	2		2	RELB	19	45529040	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	547770	45529040	13599943	744	31492											
MARK4	57787	broad.mit.edu	37	chr19	45762188	45762188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaagttaagtgcactaGcccacgggttccacggaagg	12	12	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45762188	T	T	45762188	1	4	14	0	1	0	0	0	0	0	0	0	9407	986	34	3		3	MARK4	19	45762188	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	233148	45762188	13366795	745	31493											
STRN4	29888	broad.mit.edu	37	chr19	47223906	47223906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgccagcactggcaatgaGggccttgctggggtggcagg	18	10	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47223906	T	T	47223906	3	4	14	1	0	0	0	0	1	0	0	0	15449	1000	35	2	50	2	STRN4	19	47223906	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1461718	47223906	11905077	746	31494											
SULT2B1	6820	broad.mit.edu	37	chr19	49100065	49100065	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggcaaggaggcactgggcTccgtcgtggcacactcaacc	14	13	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49100065	G	G	49100065	3	3	14	1	0	0	0	0	1	0	0	0	15500	1551	54	5	763	5	SULT2B1	19	49100065	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1876159	49100065	10028918	747	31495											
FTL	2512	broad.mit.edu	37	chr19	49469795	49469795	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actggctgctctctccccctCttttccagggattgggtttc	9	14	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49469795	G	G	49469795	1	3	14	0	1	0	0	0	0	0	0	0	6144	928	32	4		4	FTL	19	49469795	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	369730	49469795	9659188	748	31496											
FTL	2512	broad.mit.edu	37	chr19	49469978	49469978	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctcttcgaaaggctcactCtcaagcacgactaagagcct	7	13	3	1	rs1803580		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49469978	G	G	49469978	3	3	14	1	0	0	0	0	1	0	0	0	6144	913	32	4	528	4	FTL	19	49469978	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	183	49469978	9659005	749	31497											
SHANK1	50944	broad.mit.edu	37	chr19	51215467	51215467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggactggaccgtcctggGtgacctacagtggccaatga	16	10	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51215467	T	T	51215467	1	4	14	0	1	0	0	0	0	0	0	0	14377	1276	44	3		3	SHANK1	19	51215467	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1745489	51215467	7913516	750	31498											
GPR32	2854	broad.mit.edu	37	chr19	51274893	51274893	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggagaggaggagtttctgTcatcctgtccccgtggcaac	13	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51274893	C	C	51274893	3	2	14	1	0	0	0	0	1	0	0	0	6753	1667	58	5	1038	5	GPR32	19	51274893	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	59426	51274893	7854090	751	31499											
SIGLEC6	946	broad.mit.edu	37	chr19	52034802	52034802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgagggtcagctcggccCagccccacggcacctctccc	10	19	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52034802	A	A	52034802	1	1	14	0	1	0	0	0	0	0	0	0	14425	609	21	2		2	SIGLEC6	19	52034802	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	759909	52034802	7094181	752	31500											
ZNF578	147660	broad.mit.edu	37	chr19	53014138	53014138	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatcttcctgaactccaCatatttcagcccgaagagaa	6	12	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53014138	G	G	53014138	3	3	14	1	0	0	0	0	1	0	0	0	18137	477	17	4	514	4	ZNF578	19	53014138	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	979336	53014138	6114845	753	31501											
ZNF347	84671	broad.mit.edu	37	chr19	53643854	53643854	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attctgagtgaagaccttccCacactcattgcatttgtaag	7	10	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53643854	G	G	53643854	3	3	14	1	0	0	0	0	1	0	0	0	17987	594	21	4	296	4	ZNF347	19	53643854	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	629716	53643854	5485129	754	31502											
ZNF665	79788	broad.mit.edu	37	chr19	53668345	53668345	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtgtgaattttgtgtgaaGaccttaccgcagtcattaca	10	7	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53668345	C	C	53668345	2	2	14	1	0	0	0	0	0	0	0	1	18200	929	33	4		4	ZNF665	19	53668345	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	24491	53668345	5460638	755	31503											
ZNF765	91661	broad.mit.edu	37	chr19	53905468	53905468	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggatgacttccctcctgggGatgtgcccttgcgtatcttt	11	11	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53905468	C	C	53905468	1	2	14	0	1	0	0	0	0	0	0	0	18268	1189	41	4		4	ZNF765	19	53905468	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	237123	53905468	5223515	756	31504											
LAIR1	3903	broad.mit.edu	37	chr19	54872462	54872462	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgggacagggtccagggAcctggggacaagctcgaggg	19	9	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54872462	T	T	54872462	1	4	14	0	1	0	0	0	0	0	0	0	8674	290	10	5		5	LAIR1	19	54872462	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	966994	54872462	4256521	757	31505											
LILRB4	11006	broad.mit.edu	37	chr19	55177363	55177363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccaacactggcgtcaGggaaaacacaggacattggg	11	12	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55177363	T	T	55177363	3	4	14	1	0	0	0	0	1	0	0	0	8865	991	35	2	881	2	LILRB4	19	55177363	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	304901	55177363	3951620	758	31506											
LILRB4	11006	broad.mit.edu	37	chr19	55179179	55179179	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcctctcctccctccccaCtgtctggggaattcctggac	9	17	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55179179	T	T	55179179	2	4	14	1	0	0	0	0	0	0	0	1	8865	564	20	4		4	LILRB4	19	55179179	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	1816	55179179	3949804	759	31507											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272086	55272086	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctctgggccctgccacCcacggaggaacctacagatg	10	15	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55272086	T	T	55272086	1	4	14	0	1	0	0	0	0	0	0	0	8388	638	22	4		4	KIR2DL3	19	55272086	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	92907	55272086	3856897	760	31508											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272324	55272324	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatcagggcacaggatggcaGacagggcacctccaaaccct	12	13	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55272324	T	T	55272324	1	4	14	0	1	0	0	0	0	0	0	0	8388	957	33	3		3	KIR2DL3	19	55272324	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	238	55272324	3856659	761	31509											
KIR2DL1	3802	broad.mit.edu	37	chr19	55290253	55290253	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgaactccagatactcctaCagcgaaagggatctgggccc	10	14	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55290253	G	G	55290253	1	3	14	0	1	0	0	0	0	0	0	0	8387	493	17	4		4	KIR2DL1	19	55290253	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	17929	55290253	3838730	762	31510											
FCAR	2204	broad.mit.edu	37	chr19	55401199	55401199	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtcagccaggattgacCtttgcacgaacaccaagtgt	10	10	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55401199	T	T	55401199	2	4	14	1	0	0	0	0	0	0	0	1	5830	668	24	4		4	FCAR	19	55401199	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	110946	55401199	3727784	763	31511											
NLRP5	126206	broad.mit.edu	37	chr19	56538820	56538820	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgagtccttcctgatcgtCaccgtcagagacgtgggcac	11	14	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56538820	A	A	56538820	2	1	14	1	0	0	0	0	0	0	0	1	10575	813	29	3		3	NLRP5	19	56538820	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	1137621	56538820	2590163	764	31512											
ZIM2	23619	broad.mit.edu	37	chr19	57286803	57286804	+	Frame_Shift_Ins	INS	-	A	A													cactgccatagcttctttccINSggagtgagggtcttggggtc					rs149106731		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57286804	A	A	57286803	7	5	14	1	0	1	1	0	0	0	0	0	17810	639	23	0	750	0	ZIM2	19	57286803	Frame_Shift_Ins	INS	-	TCGA-05-4405-01A-21D-1855-08	747983	57286803	1842180	765	31513											
USP29	57663	broad.mit.edu	37	chr19	57641161	57641161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaacatgcagaatgatgCtcatgagtttttaggtcagt	11	6	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57641161	A	A	57641161	3	1	14	1	0	0	0	0	1	0	0	0	17186	797	28	3	1120	3	USP29	19	57641161	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	354358	57641161	1487822	766	31514											
USP29	57663	broad.mit.edu	37	chr19	57641213	57641213	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaagaagacatggaaaaAttaaatgccactttgaatac	7	6	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57641213	C	C	57641213	3	2	14	1	0	0	0	0	1	0	0	0	17186	98	4	5	1172	5	USP29	19	57641213	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	52	57641213	1487770	767	31515											
ZNF547	284306	broad.mit.edu	37	chr19	57876406	57876406	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaactgtggacaagttcaacGagtggtttgtgtcagcattt	11	6	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57876406	T	T	57876406	1	4	14	0	1	0	0	0	0	0	0	0	18106	1073	37	3		3	ZNF547	19	57876406	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	235193	57876406	1252577	768	31516											
ZNF17	7565	broad.mit.edu	37	chr19	57931586	57931586	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcagcgaaatcatactggAgaaaggccttataagtgtag	10	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57931586	T	T	57931586	2	4	14	1	0	0	0	0	0	0	0	1	17869	291	11	5		5	ZNF17	19	57931586	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	55180	57931586	1197397	769	31517											
ZSCAN1	284312	broad.mit.edu	37	chr19	58556758	58556758	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctccaggacaccatccagGagatggccttgaagaacgag	11	12	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58556758	C	C	58556758	1	2	14	0	1	0	0	0	0	0	0	0	18355	1189	41	4		4	ZSCAN1	19	58556758	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	625172	58556758	572225	770	31518											
ZSCAN1	284312	broad.mit.edu	37	chr19	58564911	58564911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatctcgagccccaaggGtccaagtgctcagagaatca	11	11	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58564911	T	T	58564911	3	4	14	1	0	0	0	0	1	0	0	0	18355	1261	44	3	733	3	ZSCAN1	19	58564911	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	8153	58564911	564072	771	31519											
SIRPA	140885	broad.mit.edu	37	chr20	1903223	1903223	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcatgacgggcagccagCggtcagcaaaagccatgacc	14	12	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1903223	T	T	1903223	3	4	14	1	0	0	0	0	1	0	0	0	14445	768	27	4	1033	4	SIRPA	20	1903223	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08		1903223	61122297	772	31520											
SLC4A11	83959	broad.mit.edu	37	chr20	3215504	3215504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccaggatctcctctcggGcttcgaaggtgtcatctgtg	11	14	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3215504	T	T	3215504	3	4	14	1	0	0	0	0	1	0	0	0	14766	1203	42	3	2574	3	SLC4A11	20	3215504	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1312281	3215504	59810016	773	31521											
SIGLEC1	6614	broad.mit.edu	37	chr20	3669764	3669764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttggcactgtgggttagCtgggtattatatctgcccgt	13	8	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3669764	A	A	3669764	1	1	14	0	1	0	0	0	0	0	0	0	14418	812	28	3		3	SIGLEC1	20	3669764	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	454260	3669764	59355756	774	31522											
RASSF2	9770	broad.mit.edu	37	chr20	4776594	4776594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttcaggagcccctccaCaatgaactcgtcttcttcct	7	14	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4776594	A	A	4776594	3	1	14	1	0	0	0	0	1	0	0	0	13194	478	17	3	858	3	RASSF2	20	4776594	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1106830	4776594	58248926	775	31523											
PLCB1	23236	broad.mit.edu	37	chr20	8719992	8719992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccgtatcttgccagtgCaagccattcggccaggtatg	11	13	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8719992	A	A	8719992	3	1	14	1	0	0	0	0	1	0	0	0	12122	711	25	3	2375	3	PLCB1	20	8719992	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3943398	8719992	54305528	776	31524											
PLCB1	23236	broad.mit.edu	37	chr20	8745782	8745782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttcatattcatttgttGcagaagtggaagcacagacc	9	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8745782	T	T	8745782	1	4	14	0	1	0	0	0	0	0	0	0	12122	1334	46	3		3	PLCB1	20	8745782	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	25790	8745782	54279738	777	31525											
PAK7	57144	broad.mit.edu	37	chr20	9546642	9546642	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcgatgcatacgatgccGgttgagccttccccgatttt	12	11	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9546642	T	T	9546642	2	4	14	1	0	0	0	0	0	0	0	1	11499	1103	39	1		1	PAK7	20	9546642	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	800860	9546642	53478878	778	31526											
RALGAPA2	57186	broad.mit.edu	37	chr20	20563737	20563737	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactcagttgtaaccaatgAcgggcatcagcatcagccac	10	12	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20563737	C	C	20563737	2	2	14	1	0	0	0	0	0	0	0	1	13122	262	10	5		5	RALGAPA2	20	20563737	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	11017095	20563737	42461783	779	31527											
GSS	2937	broad.mit.edu	37	chr20	33516594	33516594	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaggagaggaatgacaaaTacagaggatagaaggtcccg	14	6	0	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33516594	C	C	33516594	1	2	14	0	1	0	0	0	0	0	0	0	6895	1421	49	5		5	GSS	20	33516594	3'UTR	SNP	T	TCGA-05-4405-01A-21D-1855-08	12952857	33516594	29508926	780	31528											
SPAG4	6676	broad.mit.edu	37	chr20	34206307	34206307	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagccctggccgtttccaGgctgaggtaggagcaaggac	16	10	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34206307	A	A	34206307	1	1	14	0	1	0	0	0	0	0	0	0	15096	1015	35	4		4	SPAG4	20	34206307	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	689713	34206307	28819213	781	31529											
SEMG1	6406	broad.mit.edu	37	chr20	43836993	43836993	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatcataccaatcttcaaGtacggaagaaagacgactcc	6	10	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43836993	A	A	43836993	3	1	14	1	0	0	0	0	1	0	0	0	14157	1029	36	4	1061	4	SEMG1	20	43836993	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	9630686	43836993	19188527	782	31530											
ZSWIM3	140831	broad.mit.edu	37	chr20	44506100	44506100	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagatctttcctgctgcCcgcatcctcctttccatcta	6	16	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44506100	T	T	44506100	2	4	14	1	0	0	0	0	0	0	0	1	18371	610	22	4		4	ZSWIM3	20	44506100	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	669107	44506100	18519420	783	31531											
PREX1	57580	broad.mit.edu	37	chr20	47265824	47265824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcacgccggacaccccCggccagcgctcacctgttga	10	19	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47265824	A	A	47265824	1	1	14	0	1	0	0	0	0	0	0	0	12582	667	23	1		1	PREX1	20	47265824	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2759724	47265824	15759696	784	31532											
PREX1	57580	broad.mit.edu	37	chr20	47276715	47276715	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacacgtttggtttggcaaAcactattctattaaaatgga	9	6	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47276715	G	G	47276715	1	3	14	0	1	0	0	0	0	0	0	0	12582	58	2	5		5	PREX1	20	47276715	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	10891	47276715	15748805	785	31533											
TFAP2C	7022	broad.mit.edu	37	chr20	55208437	55208437	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccatgaccaagaaccctctGaacctcccctgtcagaagga	7	15	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55208437	T	T	55208437	2	4	14	1	0	0	0	0	0	0	0	1	15912	1277	45	3		3	TFAP2C	20	55208437	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	7931722	55208437	7817083	786	31534											
TFAP2C	7022	broad.mit.edu	37	chr20	55208655	55208655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaattctaggcatagtgGttgggtagttgaaggtgagt	15	4	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55208655	T	T	55208655	1	4	14	0	1	0	0	0	0	0	0	0	15912	1276	44	3		3	TFAP2C	20	55208655	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	218	55208655	7816865	787	31535											
EDN3	1908	broad.mit.edu	37	chr20	57897521	57897521	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaggtgaagatgtgacGtgtcattccttcgggggtgg	17	5	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57897521	A	A	57897521	1	1	14	0	1	0	0	0	0	0	0	0	4958	1160	40	4		4	EDN3	20	57897521	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	2688866	57897521	5127999	788	31536											
CDH4	1002	broad.mit.edu	37	chr20	60499428	60499428	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccagcgagctggctgcaCatcaatgccaccaacggcca	10	16	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60499428	T	T	60499428	2	4	14	1	0	0	0	0	0	0	0	1	3142	477	17	4		4	CDH4	20	60499428	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2601907	60499428	2526092	789	31537											
YTHDF1	54915	broad.mit.edu	37	chr20	61834123	61834123	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctcttgatgatgaacacaCgcccgcttttcagattccac	7	13	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61834123	G	G	61834123	3	3	14	1	0	0	0	0	1	0	0	0	17625	536	19	4	518	4	YTHDF1	20	61834123	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1334695	61834123	1191397	790	31538											
BIRC7	79444	broad.mit.edu	37	chr20	61869894	61869894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccctcctatttccccaaGgcctgatggtctctggctcc	8	17	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61869894	T	T	61869894	1	4	14	0	1	0	0	0	0	0	0	0	1445	1015	35	2		2	BIRC7	20	61869894	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	35771	61869894	1155626	791	31539											
BAGE2	85319	broad.mit.edu	37	chr21	11039132	11039132	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccaactgttcctcaggaCataatgaagtgctttcctca	6	11	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039132	A	A	11039132	1	1	14	0	1	0	0	0	0	0	0	0	1297	493	17	3		3	BAGE2	21	11039132	3'UTR	SNP	C	TCGA-05-4405-01A-21D-1855-08		11039132	37090763	792	31540											
TMPRSS15	5651	broad.mit.edu	37	chr21	19687580	19687580	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccttgcatggctctatggGgaaagaatgtttattgtata	11	5	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19687580	T	T	19687580	1	4	14	0	1	0	0	0	0	0	0	0	16369	1247	43	2		2	TMPRSS15	21	19687580	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	8648448	19687580	28442315	793	31541											
JAM2	58494	broad.mit.edu	37	chr21	27071084	27071084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaaagaagggaatccagctCctgaatacacatggtttaag	9	8	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27071084	A	A	27071084	3	1	14	1	0	0	0	0	1	0	0	0	8013	855	30	3	508	3	JAM2	21	27071084	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	7383504	27071084	21058811	794	31542											
KRTAP19-5	337972	broad.mit.edu	37	chr21	31874502	31874502	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatataccctggtcagagCgtgtgatgagtcatctgtat	10	8	3	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31874502	A	A	31874502	1	1	14	0	1	0	0	0	0	0	0	0	8603	783	27	3		3	KRTAP19-5	21	31874502	5'Flank	SNP	C	TCGA-05-4405-01A-21D-1855-08	4803418	31874502	16255393	795	31543											
KRTAP6-1	337966	broad.mit.edu	37	chr21	31986019	31986019	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcatcctcaataatagtAgccagagccagagccgcatc	9	12	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31986019	T	T	31986019	3	4	14	1	0	0	0	0	1	0	0	0	8641	420	15	5	14	5	KRTAP6-1	21	31986019	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	111517	31986019	16143876	796	31544											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253732	32253732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggcaaacagatgccgcCcaggcagtcagcatcagtgg	13	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32253732	A	A	32253732	3	1	14	1	0	0	0	0	1	0	0	0	8588	623	22	2	383	2	KRTAP11-1	21	32253732	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	267713	32253732	15876163	797	31545											
TIAM1	7074	broad.mit.edu	37	chr21	32639219	32639219	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggagcgggaagtgtgctTgcgccccaggctggcatgct	17	11	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32639219	G	G	32639219	3	3	14	1	0	0	0	0	1	0	0	0	16013	1821	63	5	4805	5	TIAM1	21	32639219	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	385487	32639219	15490676	798	31546											
GCFC1	94104	broad.mit.edu	37	chr21	34136681	34136681	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacgaagaacattcaatgaAgataaagcatttgaaaaagc	9	5	1	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34136681	C	C	34136681	2	2	14	1	0	0	0	0	0	0	0	1	6351	59	3	5		5	GCFC1	21	34136681	Silent	SNP	A	TCGA-05-4405-01A-21D-1855-08	1497462	34136681	13993214	799	31547											
C21orf29	54084	broad.mit.edu	37	chr21	46122226	46122226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccagctgctgtgcccCggccccctgcctgaccctgg	12	21	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46122226	A	A	46122226	1	1	14	0	1	0	0	0	0	0	0	0	2146	667	23	1		1	C21orf29	21	46122226	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	11985545	46122226	2007669	800	31548											
ADARB1	104	broad.mit.edu	37	chr21	46602442	46602442	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtcagacttcaggagcacAgttaggcaaacattactgtg	11	8	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46602442	T	T	46602442	1	4	14	0	1	0	0	0	0	0	0	0	282	203	7	5		5	ADARB1	21	46602442	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	480216	46602442	1527453	801	31549											
PI4KA	5297	broad.mit.edu	37	chr22	21174084	21174084	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggagggaatgaggagggaTtttgggaaagagctttgaga	18	2	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21174084	C	C	21174084	3	2	14	1	0	0	0	0	1	0	0	0	11968	1493	52	5	5874	5	PI4KA	22	21174084	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08		21174084	30130482	802	31550											
PIWIL3	440822	broad.mit.edu	37	chr22	25144805	25144805	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagtcattactgagactcaAgttagttcctttttgcttta	7	7	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25144805	C	C	25144805	1	2	14	0	1	0	0	0	0	0	0	0	12054	87	3	5		5	PIWIL3	22	25144805	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	3970721	25144805	26159761	803	31551											
RBM9	23543	broad.mit.edu	37	chr22	36164288	36164288	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atataaaccagaaattgaatTattaaagacatgcacctcga	5	7	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36164288	A	A	36164288	1	1	14	0	1	0	0	0	0	0	0	0	13255	1769	61	5		5	RBM9	22	36164288	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	11019483	36164288	15140278	804	31552											
DMC1	11144	broad.mit.edu	37	chr22	38962738	38962738	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtttcttaatgtcagccaCgttctgtaaattaaagaatg	7	7	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38962738	T	T	38962738	3	4	14	1	0	0	0	0	1	0	0	0	4619	536	19	4	966	4	DMC1	22	38962738	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2798450	38962738	12341828	805	31553											
TAB1	10454	broad.mit.edu	37	chr22	39811578	39811578	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaccaacttcgtggccCagcggctgtccgcagagctc	13	14	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39811578	G	G	39811578	3	3	14	1	0	0	0	0	1	0	0	0	15614	595	21	4	254	4	TAB1	22	39811578	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	848840	39811578	11492988	806	31554											
TEF	7008	broad.mit.edu	37	chr22	41790242	41790242	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcaaccctcggaagcaCaagtttgctgaggaggacct	10	12	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41790242	G	G	41790242	3	3	14	1	0	0	0	0	1	0	0	0	15872	477	17	4	699	4	TEF	22	41790242	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1978664	41790242	9514324	807	31555											
NHP2L1	4809	broad.mit.edu	37	chr22	42070894	42070894	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gataatatgatacacaacctCaggggggaagctggcaggga	14	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42070894	T	T	42070894	1	4	14	0	1	0	0	0	0	0	0	0	10505	841	29	4		4	NHP2L1	22	42070894	3'UTR	SNP	C	TCGA-05-4405-01A-21D-1855-08	280652	42070894	9233672	808	31556											
SHANK3	85358	broad.mit.edu	37	chr22	51123181	51123181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgacataaaggggccccacAccccacatctacactgtgtg	9	14	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51123181	T	T	51123181	1	4	14	0	1	0	0	0	0	0	0	0	14379	174	6	5		5	SHANK3	22	51123181	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	9052287	51123181	181385	809	31557											
MXRA5	25878	broad.mit.edu	37	chrX	3235264	3235264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgacgtccgtcctccgcGgggaggtgcccgtgatgcgc	15	15	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3235264	T	T	3235264	3	4	14	1	0	0	0	0	1	0	0	0	10097	1116	39	1	2036	1	MXRA5	23	3235264	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08		3235264	152035296	810	31558											
AMELX	265	broad.mit.edu	37	chrX	11316980	11316980	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccccatgcagcccctgCcgccacagccacctctgcct	7	22	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11316980	G	G	11316980	3	3	14	1	0	0	0	0	1	0	0	0	569	739	26	4	517	4	AMELX	23	11316980	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	8081716	11316980	143953580	811	31559											
EGFL6	25975	broad.mit.edu	37	chrX	13621271	13621271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccaagatgccacccCtactgatcccttttggctct	8	16	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13621271	A	A	13621271	1	1	14	0	1	0	0	0	0	0	0	0	5003	696	24	2		2	EGFL6	23	13621271	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	2304291	13621271	141649289	812	31560											
PHKA2	5256	broad.mit.edu	37	chrX	18963152	18963153	+	Intron	DNP	CA	AT	AT													tgaagggaaccaaatcaaagCagtaaaaacatgcagaagga							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	18963153	AT	AT	18963152	1	1	14	0	1	0	0	0	0	0	0	0	11939	725	25	3		3	PHKA2	23	18963152	Intron	DNP	CA	TCGA-05-4405-01A-21D-1855-08	5341881	18963152	136307408	813	31561											
MBTPS2	51360	broad.mit.edu	37	chrX	21887655	21887655	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaggcctttttgtgggaGaccttgtcacccatctacag	10	12	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21887655	A	A	21887655	3	1	14	1	0	0	0	0	1	0	0	0	9455	942	33	4	855	4	MBTPS2	23	21887655	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	2924503	21887655	133382905	814	31562											
PRDX4	10549	broad.mit.edu	37	chrX	23697293	23697293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttacaggattaatacccCtcgaagacaaggaggacttg	10	8	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23697293	A	A	23697293	3	1	14	1	0	0	0	0	1	0	0	0	12573	681	24	2	502	2	PRDX4	23	23697293	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1809638	23697293	131573267	815	31563											
DMD	1756	broad.mit.edu	37	chrX	31838262	31838262	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgaagataattcatgaacAtcttaatccatttggtgaat	6	5	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31838262	T	T	31838262	1	4	14	0	1	0	0	0	0	0	0	0	4620	232	8	5		5	DMD	23	31838262	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	8140969	31838262	123432298	816	31564											
DMD	1756	broad.mit.edu	37	chrX	32834589	32834589	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagtaatcttcttacctatGactatggatgagagcattca	7	8	4	2	rs141028860		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32834589	T	T	32834589	3	4	14	1	0	0	0	0	1	0	0	0	4620	1290	45	3	11070	3	DMD	23	32834589	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	996327	32834589	122435971	817	31565											
FAM47A	158724	broad.mit.edu	37	chrX	34149137	34149137	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagtaggagattggacaccTgactagtgtcgggaggttcc	14	7	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34149137	A	A	34149137	3	1	14	1	0	0	0	0	1	0	0	0	5620	1580	55	5	1120	5	FAM47A	23	34149137	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1314548	34149137	121121423	818	31566											
CXorf59	286464	broad.mit.edu	37	chrX	36163029	36163030	+	3'UTR	INS	-	T	T													ctgcactgtagcttccctggINStttgggggatttgggacttg							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36163030	T	T	36163029	6	5	14	0	1	1	1	0	0	0	0	0	4148	1276	44	0		0	CXorf59	23	36163029	3'UTR	INS	-	TCGA-05-4405-01A-21D-1855-08	2013892	36163029	119107531	819	31567											
FAM47C	442444	broad.mit.edu	37	chrX	37028233	37028233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagtgtcccatctctgcCcagagcctcccaagactcgg	10	16	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37028233	A	A	37028233	3	1	14	1	0	0	0	0	1	0	0	0	5622	623	22	2	1752	2	FAM47C	23	37028233	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	865204	37028233	118242327	820	31568											
FAM47C	442444	broad.mit.edu	37	chrX	37028467	37028467	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccagagcctcccaagactCgggtgtccagtctccccccg	10	19	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37028467	A	A	37028467	2	1	14	1	0	0	0	0	0	0	0	1	5622	875	31	3		3	FAM47C	23	37028467	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	234	37028467	118242093	821	31569											
USP11	8237	broad.mit.edu	37	chrX	47107228	47107228	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctcttctaccaacgccagGacgtggcgcgacgcctgctg	11	16	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47107228	A	A	47107228	3	1	14	1	0	0	0	0	1	0	0	0	17168	1174	41	4	2873	4	USP11	23	47107228	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	10078761	47107228	108163332	822	31570											
HDAC6	10013	broad.mit.edu	37	chrX	48682427	48682427	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagacgtgacccaaccttgTggggactgtggaacaatcca	11	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48682427	A	A	48682427	4	1	14	1	0	0	0	0	0	1	0	0	7078	1702	59	5	3501	5	HDAC6	23	48682427	Nonsense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	1575199	48682427	106588133	823	31571											
PQBP1	10084	broad.mit.edu	37	chrX	48759733	48759733	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaaggcagaccgggaagaGggcaaagaacggcgccacca	15	11	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48759733	C	C	48759733	3	2	14	1	0	0	0	0	1	0	0	0	12518	991	35	4	530	4	PQBP1	23	48759733	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	77306	48759733	106510827	824	31572											
CCDC22	28952	broad.mit.edu	37	chrX	49106052	49106052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggagacatgtgcctggGgtggggctgctgggggtggg	25	5	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49106052	T	T	49106052	1	4	14	0	1	0	0	0	0	0	0	0	2824	1247	43	2		2	CCDC22	23	49106052	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	346319	49106052	106164508	825	31573											
CCNB3	85417	broad.mit.edu	37	chrX	50053795	50053795	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaggaggccctctttaagCgacactcagctttgtgggag	13	10	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50053795	G	G	50053795	3	3	14	1	0	0	0	0	1	0	0	0	2944	760	27	4	2640	4	CCNB3	23	50053795	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	947743	50053795	105216765	826	31574											
CCNB3	85417	broad.mit.edu	37	chrX	50055774	50055774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacatattggtagcttactGtgagttggacattgtactaa	9	5	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50055774	T	T	50055774	1	4	14	0	1	0	0	0	0	0	0	0	2944	1392	48	3		3	CCNB3	23	50055774	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1979	50055774	105214786	827	31575											
TSPYL2	64061	broad.mit.edu	37	chrX	53115108	53115108	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgacaacaatgagagtgcaGatgacaacaacgagaatcct	9	9	0	5			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53115108	A	A	53115108	3	1	14	1	0	0	0	0	1	0	0	0	16785	942	33	4	1556	4	TSPYL2	23	53115108	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	3059334	53115108	102155452	828	31576											
PHF8	23133	broad.mit.edu	37	chrX	54012298	54012298	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcctgctggccttgagcaGatcaagaatgccaccagcgc	11	14	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54012298	T	T	54012298	3	4	14	1	0	0	0	0	1	0	0	0	11935	933	33	3	1188	3	PHF8	23	54012298	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	897190	54012298	101258262	829	31577											
TSR2	90121	broad.mit.edu	37	chrX	54467093	54467093	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaggtctgctcccaagctGacttggtgggcttggacctg	13	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54467093	T	T	54467093	1	4	14	0	1	0	0	0	0	0	0	0	16790	1305	45	3		3	TSR2	23	54467093	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	454795	54467093	100803467	830	31578											
OPHN1	4983	broad.mit.edu	37	chrX	67417059	67417059	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catccatggcttccatccatAgccttctgttagcttctgaa	6	13	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67417059	C	C	67417059	3	2	14	1	0	0	0	0	1	0	0	0	10969	420	15	5	1387	5	OPHN1	23	67417059	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	12949966	67417059	87853501	831	31579											
TAF1	6872	broad.mit.edu	37	chrX	70608421	70608421	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaatgtgattgttggatatCttctatgagttgtaggaaac	10	3	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70608421	A	A	70608421	1	1	14	0	1	0	0	0	0	0	0	0	15632	928	32	3		3	TAF1	23	70608421	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3191362	70608421	84662139	832	31580											
FLJ44635	392490	broad.mit.edu	37	chrX	71364202	71364202	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacagccatttgttcactcaGatctagccgaggtaactcac	8	12	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71364202	T	T	71364202	1	4	14	0	1	0	0	0	0	0	0	0	5989	957	33	3		3	FLJ44635	23	71364202	5'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	755781	71364202	83906358	833	31581											
CHIC1	53344	broad.mit.edu	37	chrX	72783310	72783310	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaagaagaggaggaggagGaagaggaggaggaagcgccg	22	3	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72783310	T	T	72783310	4	4	14	1	0	0	0	0	0	1	0	0	3374	1175	41	3	192	3	CHIC1	23	72783310	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1419108	72783310	82487250	834	31582											
KIAA2022	340533	broad.mit.edu	37	chrX	73962484	73962484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgggattctttgaatcctGtgcctgttgccaagtttaga	11	7	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73962484	T	T	73962484	3	4	14	1	0	0	0	0	1	0	0	0	8339	1368	48	3	2650	3	KIAA2022	23	73962484	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1179174	73962484	81308076	835	31583											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912693	77912693	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactctcgggtccatctcCctctgcagaggaacttttcc	9	14	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77912693	A	A	77912693	4	1	14	1	0	0	0	0	0	1	0	0	17717	632	22	2	206	2	ZCCHC5	23	77912693	Nonsense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3950209	77912693	77357867	836	31584											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913149	77913149	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcatgtaactatacagctGaaccaggaactcaggaagct	8	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77913149	T	T	77913149	3	4	14	1	0	0	0	0	1	0	0	0	17717	1299	45	3	662	3	ZCCHC5	23	77913149	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	456	77913149	77357411	837	31585											
GPR174	84636	broad.mit.edu	37	chrX	78426624	78426624	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagggaatatattagcCctgtgggtattctatggtta	10	6	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78426624	A	A	78426624	2	1	14	1	0	0	0	0	0	0	0	1	6737	610	22	2		2	GPR174	23	78426624	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	513475	78426624	76843936	838	31586											
GPR174	84636	broad.mit.edu	37	chrX	78426925	78426925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtacatcagcattgctGgctggctgatcatctgcctt	9	12	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78426925	T	T	78426925	3	4	14	1	0	0	0	0	1	0	0	0	6737	1348	47	2	423	2	GPR174	23	78426925	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	301	78426925	76843635	839	31587											
TBX22	50945	broad.mit.edu	37	chrX	79278745	79278745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaaagcgggcaggttcgGttctgcccaagctgttcaca	11	11	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79278745	T	T	79278745	1	4	14	0	1	0	0	0	0	0	0	0	15780	1276	44	3		3	TBX22	23	79278745	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	851820	79278745	75991815	840	31588											
CYLC1	1538	broad.mit.edu	37	chrX	83126380	83126380	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagtttaatttaaataataTgtttcttactcaagaataat	3	3	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83126380	A	A	83126380	1	1	14	0	1	0	0	0	0	0	0	0	4174	1479	51	5		5	CYLC1	23	83126380	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	3847635	83126380	72144180	841	31589											
KLHL4	56062	broad.mit.edu	37	chrX	86888896	86888896	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaagcacagttggtgttgTtgcattaaacaacaagtgag	11	5	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86888896	A	A	86888896	3	1	14	1	0	0	0	0	1	0	0	0	8462	1725	60	5	1727	5	KLHL4	23	86888896	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	3762516	86888896	68381664	842	31590											
PCDH11X	27328	broad.mit.edu	37	chrX	91715531	91715531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccgccgaggttggagctGctgagatgacgctcacagag	15	10	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91715531	T	T	91715531	1	4	14	0	1	0	0	0	0	0	0	0	11602	1334	46	3		3	PCDH11X	23	91715531	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	4826635	91715531	63555029	843	31591											
PCDH11X	27328	broad.mit.edu	37	chrX	91873455	91873455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctactcagcaccacagccCacgagtgacacagaccattg	7	16	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873455	A	A	91873455	3	1	14	1	0	0	0	0	1	0	0	0	11602	594	21	2	3708	2	PCDH11X	23	91873455	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	157924	91873455	63397105	844	31592											
PCDH11X	27328	broad.mit.edu	37	chrX	91873500	91873500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccacagccctccagtgaCacagaccatcgcattgtgcc	8	17	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873500	A	A	91873500	3	1	14	1	0	0	0	0	1	0	0	0	11602	478	17	3	3753	3	PCDH11X	23	91873500	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	45	91873500	63397060	845	31593											
CENPI	2491	broad.mit.edu	37	chrX	100403107	100403107	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacagtttaaatgtagtccAtcatccttctttcttgagtt	5	8	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100403107	T	T	100403107	3	4	14	1	0	0	0	0	1	0	0	0	3263	217	8	5	2121	5	CENPI	23	100403107	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	8529607	100403107	54867453	846	31594											
NXF5	55998	broad.mit.edu	37	chrX	101092851	101092851	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggagtgggtggtccggccAgtgtgggcatttccaggagt	18	8	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101092851	T	T	101092851	1	4	14	0	1	0	0	0	0	0	0	0	10881	203	7	5		5	NXF5	23	101092851	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	689744	101092851	54177709	847	31595											
ZMAT1	84460	broad.mit.edu	37	chrX	101152922	101152922	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttagcatggacctttcCcacatagtgagactgagcaa	8	9	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101152922	T	T	101152922	3	4	14	1	0	0	0	0	1	0	0	0	17817	632	22	4	1504	4	ZMAT1	23	101152922	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	60071	101152922	54117638	848	31596											
GPRASP1	9737	broad.mit.edu	37	chrX	101912716	101912716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctacaggcaatgccaaaaCaaggtttcatgttttgaaaa	8	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101912716	A	A	101912716	3	1	14	1	0	0	0	0	1	0	0	0	6788	478	17	3	3877	3	GPRASP1	23	101912716	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	759794	101912716	53357844	849	31597											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104992803	104992803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaaaaatttgattcataCaaatgtatcaagagcaaagc	5	6	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104992803	A	A	104992803	1	1	14	0	1	0	0	0	0	0	0	0	7732	493	17	3		3	IL1RAPL2	23	104992803	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3080087	104992803	50277757	850	31598											
TBC1D8B	54885	broad.mit.edu	37	chrX	106083270	106083270	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttgttttgatttttctgtCattacagttgaaagaaaaaa	7	3	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106083270	A	A	106083270	1	1	14	0	1	0	0	0	0	0	0	0	15748	841	29	3		3	TBC1D8B	23	106083270	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1090467	106083270	49187290	851	31599											
CLDN2	9075	broad.mit.edu	37	chrX	106171887	106171887	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctggaatcttcatgggatCctacgggacttctactcacc	9	13	4	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106171887	A	A	106171887	2	1	14	1	0	0	0	0	0	0	0	1	3512	845	30	3		3	CLDN2	23	106171887	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	88617	106171887	49098673	852	31600											
MORC4	79710	broad.mit.edu	37	chrX	106224776	106224776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaaaaatgcactaggagCccaaaagaaaaaaaaacaat	5	7	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106224776	A	A	106224776	1	1	14	0	1	0	0	0	0	0	0	0	9798	754	26	3		3	MORC4	23	106224776	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	52889	106224776	49045784	853	31601											
IRS4	8471	broad.mit.edu	37	chrX	107976663	107976663	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctgagaggtcgtttgctGgatttggaaatggcactcca	13	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107976663	A	A	107976663	3	1	14	1	0	0	0	0	1	0	0	0	7912	1348	47	4	865	4	IRS4	23	107976663	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	1751887	107976663	47293897	854	31602											
ALG13	79868	broad.mit.edu	37	chrX	110987964	110987964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctctctaccaccaccaCcaccaccaccaccaccacca	2	24	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110987964	A	A	110987964	3	1	14	1	0	0	0	0	1	0	0	0	515	507	18	3	3000	3	ALG13	23	110987964	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	3011301	110987964	44282596	855	31603											
TRPC5	7224	broad.mit.edu	37	chrX	111195495	111195495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagatctcagcctcctgaaGggcctgcttcacagtggcat	11	12	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111195495	A	A	111195495	3	1	14	1	0	0	0	0	1	0	0	0	16707	1000	35	4	2807	4	TRPC5	23	111195495	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	207531	111195495	44075065	856	31604											
LRCH2	57631	broad.mit.edu	37	chrX	114422812	114422812	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgttaaggtatgttaacatCtgcagatttttaatggcttc	8	5	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114422812	T	T	114422812	2	4	14	1	0	0	0	0	0	0	0	1	9020	912	32	4		4	LRCH2	23	114422812	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	3227317	114422812	40847748	857	31605											
DOCK11	139818	broad.mit.edu	37	chrX	117677516	117677516	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attggcacgtggtaaactacAagtatgaggacttctctggg	12	7	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117677516	T	T	117677516	4	4	14	1	0	0	0	0	0	1	0	0	4726	131	5	5	366	5	DOCK11	23	117677516	Nonsense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	3254704	117677516	37593044	858	31606											
DOCK11	139818	broad.mit.edu	37	chrX	117731320	117731320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccaccctgccctgcccCctagcagtcagccatttgtg	7	18	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117731320	A	A	117731320	1	1	14	0	1	0	0	0	0	0	0	0	4726	638	22	2		2	DOCK11	23	117731320	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	53804	117731320	37539240	859	31607											
DOCK11	139818	broad.mit.edu	37	chrX	117742200	117742200	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttatttgtagtatagcTtccgacctgaaaaaccgagt	8	7	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117742200	A	A	117742200	3	1	14	1	0	0	0	0	1	0	0	0	4726	1609	56	5	2860	5	DOCK11	23	117742200	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	10880	117742200	37528360	860	31608											
UPF3B	65109	broad.mit.edu	37	chrX	118974750	118974750	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccagccagccctaagccctCatttactatgaatttagagg	8	12	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118974750	A	A	118974750	1	1	14	0	1	0	0	0	0	0	0	0	17132	841	29	3		3	UPF3B	23	118974750	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	1232550	118974750	36295810	861	31609											
NKAP	79576	broad.mit.edu	37	chrX	119059436	119059436	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattaatcctttcttacccaGagtggtctatttaacagctg	6	10	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119059436	C	C	119059436	1	2	14	0	1	0	0	0	0	0	0	0	10534	957	33	4		4	NKAP	23	119059436	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	84686	119059436	36211124	862	31610											
CUL4B	8450	broad.mit.edu	37	chrX	119693910	119693910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagtgtcaaatccttattaGgtgattatggattttggcct	10	6	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119693910	T	T	119693910	1	4	14	0	1	0	0	0	0	0	0	0	4091	1015	35	2		2	CUL4B	23	119693910	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	634474	119693910	35576650	863	31611											
ODZ1	10178	broad.mit.edu	37	chrX	123615651	123615651	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgactctggtcaaagggaaGgcactgatcaccagttcctg	11	10	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123615651	A	A	123615651	3	1	14	1	0	0	0	0	1	0	0	0	10929	1000	35	4	4362	4	ODZ1	23	123615651	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	3921741	123615651	31654909	864	31612											
ODZ1	10178	broad.mit.edu	37	chrX	124097540	124097540	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagaactggtgtaagcTagatccatttcatgcttgac	9	8	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124097540	C	C	124097540	2	2	14	1	0	0	0	0	0	0	0	1	10929	1509	53	5		5	ODZ1	23	124097540	Silent	SNP	T	TCGA-05-4405-01A-21D-1855-08	481889	124097540	31173020	865	31613											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298847	125298847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggtagaagctcagcgacCgcacgcctgtgccaccctct	11	16	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298847	A	A	125298847	3	1	14	1	0	0	0	0	1	0	0	0	4298	652	23	1	334	1	DCAF12L2	23	125298847	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	1201307	125298847	29971713	866	31614											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686610	125686610	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgggcggcgggcgagcGgcggcggcaaggcgttggtg	24	8	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125686610	T	T	125686610	1	4	14	0	1	0	0	0	0	0	0	0	4297	1131	39	1		1	DCAF12L1	23	125686610	5'UTR	SNP	G	TCGA-05-4405-01A-21D-1855-08	387763	125686610	29583950	867	31615											
XPNPEP2	7512	broad.mit.edu	37	chrX	128888569	128888569	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccgagggtgaagagccaCggccgtcctttttggctgac	14	11	0	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128888569	T	T	128888569	1	4	14	0	1	0	0	0	0	0	0	0	17570	551	19	4		4	XPNPEP2	23	128888569	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	3201959	128888569	26381991	868	31616											
XPNPEP2	7512	broad.mit.edu	37	chrX	128901653	128901653	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctcatcgatgtcagcctGctgtctcccgagcatgtgag	10	13	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128901653	A	A	128901653	2	1	14	1	0	0	0	0	0	0	0	1	17570	1306	46	4		4	XPNPEP2	23	128901653	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	13084	128901653	26368907	869	31617											
ZDHHC9	51114	broad.mit.edu	37	chrX	128962856	128962856	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatctcagagagaaaaggcTagaagtgattattaatctgc	11	5	2	4			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128962856	C	C	128962856	1	2	14	0	1	0	0	0	0	0	0	0	17748	1537	53	5		5	ZDHHC9	23	128962856	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	61203	128962856	26307704	870	31618											
UTP14A	10813	broad.mit.edu	37	chrX	129054695	129054695	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagtgggaaatgggccaaGtcaaaggcaattatggccaa	12	7	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129054695	A	A	129054695	2	1	14	1	0	0	0	0	0	0	0	1	17222	1020	36	4		4	UTP14A	23	129054695	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	91839	129054695	26215865	871	31619											
ENOX2	10495	broad.mit.edu	37	chrX	129771317	129771317	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagttctacttcattccgGtaggcatcgagctgccaacg	10	12	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129771317	T	T	129771317	4	4	14	1	0	0	0	0	0	1	0	0	5169	1256	44	3	568	3	ENOX2	23	129771317	Nonsense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	716622	129771317	25499243	872	31620											
USP26	83844	broad.mit.edu	37	chrX	132162134	132162134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacttttgaaatacagcaCcagtctatctttcttctttc	3	12	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132162134	A	A	132162134	3	1	14	1	0	0	0	0	1	0	0	0	17183	507	18	3	2629	3	USP26	23	132162134	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	2390817	132162134	23108426	873	31621											
GPC4	2239	broad.mit.edu	37	chrX	132548853	132548853	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgatctcgtggaggggGgcatcgttcttgttgaagcc	15	9	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132548853	A	A	132548853	2	1	14	1	0	0	0	0	0	0	0	1	6665	1219	43	4		4	GPC4	23	132548853	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	386719	132548853	22721707	874	31622											
GPR112	139378	broad.mit.edu	37	chrX	135430448	135430448	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccttcacctccaaaaaagTttctgacactcccccaatag	4	15	2	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135430448	A	A	135430448	3	1	14	1	0	0	0	0	1	0	0	0	6694	1725	60	5	4593	5	GPR112	23	135430448	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	2881595	135430448	19840112	875	31623											
GPR112	139378	broad.mit.edu	37	chrX	135430861	135430861	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaccaccattatggctGggatagtgactccatttgta	8	11	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135430861	T	T	135430861	3	4	14	1	0	0	0	0	1	0	0	0	6694	1348	47	2	5006	2	GPR112	23	135430861	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	413	135430861	19839699	876	31624											
GPR112	139378	broad.mit.edu	37	chrX	135445641	135445641	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctctctttttcagttcaaTcagcatcaacacgggcaaat	5	12	5	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135445641	A	A	135445641	3	1	14	1	0	0	0	0	1	0	0	0	6694	1435	50	5	7321	5	GPR112	23	135445641	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	14780	135445641	19824919	877	31625											
SLITRK2	84631	broad.mit.edu	37	chrX	144904509	144904509	+	Frame_Shift_Del	DEL	G	-	-													gctgacccacttagacctcaGggggaataggctaaaagtaa							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144904509	-	-	144904509	7	5	14	1	0	1	0	1	0	0	0	0	14857	1000	35	0	568	0	SLITRK2	23	144904509	Frame_Shift_Del	DEL	G	TCGA-05-4405-01A-21D-1855-08	9458868	144904509	10366051	878	31626											
MAGEA11	4110	broad.mit.edu	37	chrX	148797199	148797199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcacctgccctacctcaGtcctggagcctcctgctctg	7	19	3	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148797199	T	T	148797199	1	4	14	0	1	0	0	0	0	0	0	0	9253	1044	36	3		3	MAGEA11	23	148797199	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3892690	148797199	6473361	879	31627											
MTM1	4534	broad.mit.edu	37	chrX	149826538	149826538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttctaaaaatagatcactAccattcaggattttaaaact	3	7	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149826538	G	G	149826538	1	3	14	0	1	0	0	0	0	0	0	0	10031	406	14	5		5	MTM1	23	149826538	Intron	SNP	A	TCGA-05-4405-01A-21D-1855-08	1029339	149826538	5444022	880	31628											
VMA21	203547	broad.mit.edu	37	chrX	150572277	150572277	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattctgtgcttttatgaccTctttatatctttaaactggg	7	7	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150572277	A	A	150572277	1	1	14	0	1	0	0	0	0	0	0	0	17302	1566	54	5		5	VMA21	23	150572277	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	745739	150572277	4698283	881	31629											
PASD1	139135	broad.mit.edu	37	chrX	150839405	150839405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaggatttgagagctacCatttgcattctcagtctttc	7	9	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150839405	A	A	150839405	1	1	14	0	1	0	0	0	0	0	0	0	11565	609	21	2		2	PASD1	23	150839405	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	267128	150839405	4431155	882	31630											
NSDHL	50814	broad.mit.edu	37	chrX	152027285	152027285	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacctgtcaaagcaggaatGattattttgtctttctttgc	8	7	3	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152027285	C	C	152027285	1	2	14	0	1	0	0	0	0	0	0	0	10765	1305	45	4		4	NSDHL	23	152027285	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	1187880	152027285	3243275	883	31631											
NSDHL	50814	broad.mit.edu	37	chrX	152031272	152031272	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatcttacaggagagggtaTgtaccttggaactggttgag	14	5	1	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152031272	A	A	152031272	1	1	14	0	1	0	0	0	0	0	0	0	10765	1479	51	5		5	NSDHL	23	152031272	Intron	SNP	T	TCGA-05-4405-01A-21D-1855-08	3987	152031272	3239288	884	31632											
HAUS7	55559	broad.mit.edu	37	chrX	152734677	152734677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttcctgaattgtctttgGctctgtgatatacagaccct	8	10	2	3			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152734677	T	T	152734677	3	4	14	1	0	0	0	0	1	0	0	0	7037	1203	42	3	961	3	HAUS7	23	152734677	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	703405	152734677	2535883	885	31633											
BGN	633	broad.mit.edu	37	chrX	152770113	152770114	+	Missense_Mutation	DNP	GT	TA	TA													tggcccctgtggcgcctcgtGtctctgctggccctgagcca							TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	152770114	TA	TA	152770113	3	4	14	1	0	0	0	0	1	0	0	0	1424	1364	48	3	26	3	BGN	23	152770113	Missense_Mutation	DNP	GT	TCGA-05-4405-01A-21D-1855-08	35436	152770113	2500447	886	31634											
ATP2B3	492	broad.mit.edu	37	chrX	152806953	152806953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccctcatcatcctggaGgtggctgccatcgtctctct	10	14	4	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152806953	T	T	152806953	3	4	14	1	0	0	0	0	1	0	0	0	1145	991	35	2	351	2	ATP2B3	23	152806953	Missense_Mutation	SNP	G	TCGA-05-4405-01A-21D-1855-08	36840	152806953	2463607	887	31635											
PLXNB3	5365	broad.mit.edu	37	chrX	153036200	153036200	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttctgaagggctgagggctCttgttttcccaggtggacat	14	8	2	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153036200	A	A	153036200	1	1	14	0	1	0	0	0	0	0	0	0	12220	928	32	3		3	PLXNB3	23	153036200	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	229247	153036200	2234360	888	31636											
PLXNB3	5365	broad.mit.edu	37	chrX	153039556	153039556	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgtcctggatgtggaggtGagggccaccttcaaccctgc	13	12	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153039556	C	C	153039556	1	2	14	0	1	0	0	0	0	0	0	0	12220	1305	45	4		4	PLXNB3	23	153039556	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	3356	153039556	2231004	889	31637											
IDH3G	3421	broad.mit.edu	37	chrX	153051701	153051701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgccaggacagccttaCggatggaggtggcataggag	17	7	0	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153051701	A	A	153051701	3	1	14	1	0	0	0	0	1	0	0	0	7568	536	19	3	206	3	IDH3G	23	153051701	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	12145	153051701	2218859	890	31638											
L1CAM	3897	broad.mit.edu	37	chrX	153128312	153128312	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgatgtccccgttgagcgAtggctggctgctgccaaagg	14	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153128312	T	T	153128312	3	4	14	1	0	0	0	0	1	0	0	0	8660	333	12	5	197	5	L1CAM	23	153128312	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	76611	153128312	2142248	891	31639											
L1CAM	3897	broad.mit.edu	37	chrX	153130448	153130448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccttgcccccctcatcCactgtggggacagacagggg	12	16	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153130448	A	A	153130448	2	1	14	1	0	0	0	0	0	0	0	1	8660	608	21	2		2	L1CAM	23	153130448	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	2136	153130448	2140112	892	31640											
L1CAM	3897	broad.mit.edu	37	chrX	153132929	153132929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcttgagggtggtagaGgtctggttccctggaacctt	15	8	1	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153132929	T	T	153132929	2	4	14	1	0	0	0	0	0	0	0	1	8660	987	35	2		2	L1CAM	23	153132929	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	2481	153132929	2137631	893	31641											
L1CAM	3897	broad.mit.edu	37	chrX	153136381	153136381	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggttgccgttctggcccatCgtcacccgctcgtcctgctt	10	16	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153136381	A	A	153136381	2	1	14	1	0	0	0	0	0	0	0	1	8660	871	31	3		3	L1CAM	23	153136381	Silent	SNP	C	TCGA-05-4405-01A-21D-1855-08	3452	153136381	2134179	894	31642											
NAA10	8260	broad.mit.edu	37	chrX	153197641	153197641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacgtccaggtcttgcccCtcctcctggtccctccttcc	7	20	1	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153197641	A	A	153197641	1	1	14	0	1	0	0	0	0	0	0	0	10210	696	24	2		2	NAA10	23	153197641	Intron	SNP	C	TCGA-05-4405-01A-21D-1855-08	61260	153197641	2072919	895	31643											
OPN1LW	5956	broad.mit.edu	37	chrX	153420135	153420135	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcagtcttacatgattgTcctcatggtcacctgctgca	10	11	3	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153420135	A	A	153420135	3	1	14	1	0	0	0	0	1	0	0	0	10971	1667	58	5	679	5	OPN1LW	23	153420135	Missense_Mutation	SNP	T	TCGA-05-4405-01A-21D-1855-08	222494	153420135	1850425	896	31644											
FAM50A	9130	broad.mit.edu	37	chrX	153678642	153678642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgctgggaaccctacgaccCtgaaaagaagtgggacaagt	12	11	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153678642	A	A	153678642	3	1	14	1	0	0	0	0	1	0	0	0	5628	681	24	2	1032	2	FAM50A	23	153678642	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	258507	153678642	1591918	897	31645											
FAM3A	60343	broad.mit.edu	37	chrX	153735087	153735087	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctctgtccgcccggcagCgcgcgtgcctcccttggtct	12	18	2	0			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153735087	A	A	153735087	1	1	14	0	1	0	0	0	0	0	0	0	5607	783	27	3		3	FAM3A	23	153735087	3'UTR	SNP	C	TCGA-05-4405-01A-21D-1855-08	56445	153735087	1535473	898	31646											
FAM3A	60343	broad.mit.edu	37	chrX	153740155	153740155	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agggatgtcacaaaggggagGagcagggaggtgacaggggc	21	5	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153740155	C	C	153740155	1	2	14	0	1	0	0	0	0	0	0	0	5607	1189	41	4		4	FAM3A	23	153740155	Intron	SNP	G	TCGA-05-4405-01A-21D-1855-08	5068	153740155	1530405	899	31647											
F8	2157	broad.mit.edu	37	chrX	154157322	154157322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcccaagcaagaggatcCaatagcttggagggagtctt	11	8	1	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154157322	A	A	154157322	3	1	14	1	0	0	0	0	1	0	0	0	5393	593	21	2	2392	2	F8	23	154157322	Missense_Mutation	SNP	C	TCGA-05-4405-01A-21D-1855-08	417167	154157322	1113238	900	31648											
RAB39B	116442	broad.mit.edu	37	chrX	154493532	154493532	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcccactgtggaatccccGatgacaatgagccggaactg	11	12	0	2			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154493532	T	T	154493532	2	4	14	1	0	0	0	0	0	0	0	1	13038	1048	37	3		3	RAB39B	23	154493532	Silent	SNP	G	TCGA-05-4405-01A-21D-1855-08	336210	154493532	777028	901	31649											
RAB39B	116442	broad.mit.edu	37	chrX	154493561	154493561	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagccggaactggtacagccAgatggcctccatggccgcgg	15	13	0	1			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154493561	T	T	154493561	3	4	14	1	0	0	0	0	1	0	0	0	13038	188	7	5	636	5	RAB39B	23	154493561	Missense_Mutation	SNP	A	TCGA-05-4405-01A-21D-1855-08	29	154493561	776999	902	31650											
TAS1R3	83756	broad.mit.edu	37	chr1	1268139	1268139	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcacaacactcttcagTgcaacgcctcaggctgcccc	7	19	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1268139	A	A	1268139	3	1	15	1	0	0	0	0	1	0	0	0	15683	1696	59	5	1238	5	TAS1R3	1	1268139	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08		1268139	247982482	1	31651											
ATAD3C	219293	broad.mit.edu	37	chr1	1387814	1387814	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggacaaagtgacagccacGgtaaacatactcataaaaca	8	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1387814	T	T	1387814	2	4	15	1	0	0	0	0	0	0	0	1	1079	1130	39	1		1	ATAD3C	1	1387814	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	119675	1387814	247862807	2	31652											
ATAD3B	83858	broad.mit.edu	37	chr1	1420477	1420477	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggccgcttcatcgaggctCggctggggaagccgtcccta	14	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1420477	T	T	1420477	3	4	15	1	0	0	0	0	1	0	0	0	1078	875	31	4	862	4	ATAD3B	1	1420477	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	32663	1420477	247830144	3	31653											
SLC35E2	9906	broad.mit.edu	37	chr1	1666259	1666259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcttcccgctcctccCgatcactgggacgtcctatg	9	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1666259	A	A	1666259	3	1	15	1	0	0	0	0	1	0	0	0	14699	652	23	1	1456	1	SLC35E2	1	1666259	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	245782	1666259	247584362	4	31654											
ACTRT2	140625	broad.mit.edu	37	chr1	2938660	2938660	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcggcgtgcccgctttctAcctgtcggaccaggcggtgc	13	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2938660	G	G	2938660	3	3	15	1	0	0	0	0	1	0	0	0	219	391	14	5	412	5	ACTRT2	1	2938660	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1272401	2938660	246311961	5	31655											
AJAP1	55966	broad.mit.edu	37	chr1	4772109	4772109	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcggtcgccgccccggcCgccccggctgtggagtttta	15	17	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4772109	T	T	4772109	3	4	15	1	0	0	0	0	1	0	0	0	438	652	23	4	185	4	AJAP1	1	4772109	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1833449	4772109	244478512	6	31656											
TAS1R1	80835	broad.mit.edu	37	chr1	6639186	6639186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatcagctcagcggccCagctgcttatctgtctaact	9	12	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6639186	A	A	6639186	3	1	15	1	0	0	0	0	1	0	0	0	15681	595	21	2	2090	2	TAS1R1	1	6639186	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1867077	6639186	242611435	7	31657											
NMNAT1	64802	broad.mit.edu	37	chr1	10035810	10035810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagtcttcagaaggagtgGaaagagactctgaaggtgct	14	5	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10035810	T	T	10035810	3	4	15	1	0	0	0	0	1	0	0	0	10593	1183	41	3	282	3	NMNAT1	1	10035810	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3396624	10035810	239214811	8	31658											
UBE4B	10277	broad.mit.edu	37	chr1	10239431	10239431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttctttttcagtcgtGggctctcagtagattagagt	10	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10239431	T	T	10239431	1	4	15	0	1	0	0	0	0	0	0	0	17009	1363	47	2		2	UBE4B	1	10239431	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	203621	10239431	239011190	9	31659											
KIF1B	23095	broad.mit.edu	37	chr1	10394657	10394657	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcagtgagaaaggtgaaGtgcggggatttctgcgtgtg	17	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10394657	A	A	10394657	3	1	15	1	0	0	0	0	1	0	0	0	8354	1029	36	4	4453	4	KIF1B	1	10394657	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	155226	10394657	238855964	10	31660											
APITD1	378708	broad.mit.edu	37	chr1	10493733	10493733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccacaagtcgcactccaGtgggtctcattaacttatta	6	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10493733	T	T	10493733	1	4	15	0	1	0	0	0	0	0	0	0	777	1044	36	3		3	APITD1	1	10493733	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	99076	10493733	238756888	11	31661											
UBIAD1	29914	broad.mit.edu	37	chr1	11333506	11333506	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaggtcgggccctgctGccccgccccgtccttcctcc	11	19	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11333506	T	T	11333506	1	4	15	0	1	0	0	0	0	0	0	0	17011	1334	46	3		3	UBIAD1	1	11333506	5'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	839773	11333506	237917115	12	31662											
PTCHD2	57540	broad.mit.edu	37	chr1	11586583	11586583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgcccagggctctgtcCccaactccgaggactgggac	11	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11586583	A	A	11586583	1	1	15	0	1	0	0	0	0	0	0	0	12839	638	22	2		2	PTCHD2	1	11586583	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	253077	11586583	237664038	13	31663											
VPS13D	55187	broad.mit.edu	37	chr1	12414217	12414217	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgccaattaatgggacGctgaaacctggcaaggaggc	14	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12414217	T	T	12414217	2	4	15	1	0	0	0	0	0	0	0	1	17319	1074	38	3		3	VPS13D	1	12414217	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	827634	12414217	236836404	14	31664											
C1orf158	93190	broad.mit.edu	37	chr1	12819149	12819149	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgctctctccatcagcaccAcagacccctacatgtggcag	7	18	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12819149	T	T	12819149	1	4	15	0	1	0	0	0	0	0	0	0	2027	174	6	5		5	C1orf158	1	12819149	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	404932	12819149	236431472	15	31665											
NBPF1	55672	broad.mit.edu	37	chr1	16894765	16894765	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcttccctatgtgctctgtCctaggtttgtgtacacaaat	7	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16894765	T	T	16894765	1	4	15	0	1	0	0	0	0	0	0	0	10286	870	30	4		4	NBPF1	1	16894765	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	4075616	16894765	232355856	16	31666											
NBPF1	55672	broad.mit.edu	37	chr1	16901192	16901192	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccttcggcatctccctgaTgagccaggtgggacagagat	13	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16901192	A	A	16901192	1	1	15	0	1	0	0	0	0	0	0	0	10286	1479	51	5		5	NBPF1	1	16901192	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	6427	16901192	232349429	17	31667											
ATP13A2	23400	broad.mit.edu	37	chr1	17327033	17327033	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtaggggttcagtgcctgGgggaggggcgggaggcagcg	23	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17327033	A	A	17327033	1	1	15	0	1	0	0	0	0	0	0	0	1128	1247	43	4		4	ATP13A2	1	17327033	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	425841	17327033	231923588	18	31668											
PADI2	11240	broad.mit.edu	37	chr1	17396687	17396687	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccagctccttcttgaggaTgtcacggttccagtctaggc	10	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17396687	A	A	17396687	3	1	15	1	0	0	0	0	1	0	0	0	11472	1464	51	5	345	5	PADI2	1	17396687	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	69654	17396687	231853934	19	31669											
PADI3	51702	broad.mit.edu	37	chr1	17586065	17586065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgaccatggctctctgccCtgcccaggtcagtgcctgag	11	16	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17586065	A	A	17586065	1	1	15	0	1	0	0	0	0	0	0	0	11473	696	24	2		2	PADI3	1	17586065	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	189378	17586065	231664556	20	31670											
PADI4	23569	broad.mit.edu	37	chr1	17674519	17674519	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggaacagaggcctgaaGgagtttcccatcaaacgcgt	11	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17674519	A	A	17674519	2	1	15	1	0	0	0	0	0	0	0	1	11474	991	35	4		4	PADI4	1	17674519	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	88454	17674519	231576102	21	31671											
UBR4	23352	broad.mit.edu	37	chr1	19478261	19478261	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcgatatatgacggggcCcgttctattgcttgagtccc	10	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19478261	A	A	19478261	2	1	15	1	0	0	0	0	0	0	0	1	17030	610	22	2		2	UBR4	1	19478261	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1803742	19478261	229772360	22	31672											
TMCO4	255104	broad.mit.edu	37	chr1	20096969	20096969	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtggtggcacctctcaCtggctttgctagccaagggt	13	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20096969	A	A	20096969	1	1	15	0	1	0	0	0	0	0	0	0	16121	580	20	3		3	TMCO4	1	20096969	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	618708	20096969	229153652	23	31673											
PLA2G2A	5320	broad.mit.edu	37	chr1	20304510	20304510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggtaggactcttaccaCaggtgattctgctccccgag	12	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20304510	A	A	20304510	3	1	15	1	0	0	0	0	1	0	0	0	12090	478	17	3	152	3	PLA2G2A	1	20304510	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	207541	20304510	228946111	24	31674											
PLA2G2D	26279	broad.mit.edu	37	chr1	20440630	20440630	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacccaggggtctgcccccGgcagtggggccgccagtaga	16	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20440630	T	T	20440630	2	4	15	1	0	0	0	0	0	0	0	1	12092	1115	39	1		1	PLA2G2D	1	20440630	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	136120	20440630	228809991	25	31675											
PLA2G2F	64600	broad.mit.edu	37	chr1	20466628	20466628	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccaagggtggaggggatgGactcaagctccgggtttcgt	17	8	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20466628	T	T	20466628	1	4	15	0	1	0	0	0	0	0	0	0	12094	1189	41	3		3	PLA2G2F	1	20466628	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	25998	20466628	228783993	26	31676											
HSPG2	3339	broad.mit.edu	37	chr1	22176624	22176624	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcagttcaggtccagggtCtgcccctcggccacttgcga	13	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22176624	G	G	22176624	3	3	15	1	0	0	0	0	1	0	0	0	7500	912	32	4	5983	4	HSPG2	1	22176624	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1709996	22176624	227073997	27	31677											
HSPG2	3339	broad.mit.edu	37	chr1	22211675	22211675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccagggcaggagtgaGgggtcgggggcaaaggaagg	23	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22211675	A	A	22211675	1	1	15	0	1	0	0	0	0	0	0	0	7500	1015	35	4		4	HSPG2	1	22211675	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	35051	22211675	227038946	28	31678											
HSPG2	3339	broad.mit.edu	37	chr1	22222419	22222419	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctgcagcaacttacccatCtggaagtccccgctgcccag	9	17	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22222419	T	T	22222419	2	4	15	1	0	0	0	0	0	0	0	1	7500	912	32	4		4	HSPG2	1	22222419	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	10744	22222419	227028202	29	31679											
MYOM3	127294	broad.mit.edu	37	chr1	24394530	24394530	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaaaatctgtgaacacAgagggaggaactggcatgag	13	6	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24394530	G	G	24394530	1	3	15	0	1	0	0	0	0	0	0	0	10187	203	7	5		5	MYOM3	1	24394530	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2172111	24394530	224856091	30	31680											
TMEM57	55219	broad.mit.edu	37	chr1	25824928	25824928	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctggacttgaccccaatGcctctgtttaccagcccctg	7	17	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25824928	C	C	25824928	3	2	15	1	0	0	0	0	1	0	0	0	16307	1319	46	4	2008	4	TMEM57	1	25824928	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1430398	25824928	223425693	31	31681											
UBXN11	91544	broad.mit.edu	37	chr1	26644339	26644339	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatccacccccagatctgcaGaaaggaagccacacccctcc	6	18	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26644339	A	A	26644339	1	1	15	0	1	0	0	0	0	0	0	0	17039	957	33	4		4	UBXN11	1	26644339	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	819411	26644339	222606282	32	31682											
AIM1L	55057	broad.mit.edu	37	chr1	26655333	26655333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccctcgaagcactcgagtCcatacaggaaaatggaaggc	10	12	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26655333	A	A	26655333	3	1	15	1	0	0	0	0	1	0	0	0	431	855	30	3	659	3	AIM1L	1	26655333	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	10994	26655333	222595288	33	31683											
AIM1L	55057	broad.mit.edu	37	chr1	26672269	26672269	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcactggctgggatgcctgTagaggccagggcagagctgt	17	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26672269	C	C	26672269	1	2	15	0	1	0	0	0	0	0	0	0	431	1653	57	5		5	AIM1L	1	26672269	5'Flank	SNP	T	TCGA-05-4410-01A-21D-1855-08	16936	26672269	222578352	34	31684											
ARID1A	8289	broad.mit.edu	37	chr1	27105437	27105437	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgatacagaagacttgggGaggtctctcaagtcaataat	10	7	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27105437	T	T	27105437	1	4	15	0	1	0	0	0	0	0	0	0	915	1189	41	3		3	ARID1A	1	27105437	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	433168	27105437	222145184	35	31685											
DNAJC8	22826	broad.mit.edu	37	chr1	28537039	28537039	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggaacagttaggccctgcCattcacaatctaatactcag	7	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28537039	G	G	28537039	1	3	15	0	1	0	0	0	0	0	0	0	4695	609	21	4		4	DNAJC8	1	28537039	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1431602	28537039	220713582	36	31686											
MATN1	4146	broad.mit.edu	37	chr1	31187962	31187962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccacctccacagtgccCcacctgcaaatcccatcaat	5	19	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31187962	A	A	31187962	1	1	15	0	1	0	0	0	0	0	0	0	9425	638	22	2		2	MATN1	1	31187962	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2650923	31187962	218062659	37	31687											
ZCCHC17	51538	broad.mit.edu	37	chr1	31821624	31821624	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggggaaagattcacttgctGagaagagagactacttcctt	11	7	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31821624	A	A	31821624	1	1	15	0	1	0	0	0	0	0	0	0	17711	1305	45	4		4	ZCCHC17	1	31821624	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	633662	31821624	217428997	38	31688											
SPOCD1	90853	broad.mit.edu	37	chr1	32259395	32259395	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctggttttgggcatctcTggagcaggcataggagtttg	14	8	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32259395	C	C	32259395	2	2	15	1	0	0	0	0	0	0	0	1	15196	1567	55	5		5	SPOCD1	1	32259395	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	437771	32259395	216991226	39	31689											
BSDC1	55108	broad.mit.edu	37	chr1	32842006	32842006	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccggtgtggccagcaggcGttaggggcttggagtgaata	18	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32842006	A	A	32842006	3	1	15	1	0	0	0	0	1	0	0	0	1537	1145	40	4	291	4	BSDC1	1	32842006	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	582611	32842006	216408615	40	31690											
RNF19B	127544	broad.mit.edu	37	chr1	33413741	33413741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacctgtaatgagagaacGgatgtgtctttttgacatcc	9	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33413741	T	T	33413741	1	4	15	0	1	0	0	0	0	0	0	0	13582	1131	39	1		1	RNF19B	1	33413741	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	571735	33413741	215836880	41	31691											
CSMD2	114784	broad.mit.edu	37	chr1	34090638	34090638	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcaccctcaacgcccgggtCctggttactcacccacacac	7	20	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34090638	A	A	34090638	1	1	15	0	1	0	0	0	0	0	0	0	3979	870	30	3		3	CSMD2	1	34090638	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	676897	34090638	215159983	42	31692											
CSMD2	114784	broad.mit.edu	37	chr1	34204909	34204909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccatttactggaacgccagGatccgggcactcgttgtgtc	12	12	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34204909	C	C	34204909	3	2	15	1	0	0	0	0	1	0	0	0	3979	1174	41	4	8603	4	CSMD2	1	34204909	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	114271	34204909	215045712	43	31693											
DLGAP3	58512	broad.mit.edu	37	chr1	35351024	35351024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgcttccagcccctcacCccagccccgaccgaccaggg	10	22	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35351024	A	A	35351024	1	1	15	0	1	0	0	0	0	0	0	0	4601	638	22	2		2	DLGAP3	1	35351024	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1146115	35351024	213899597	44	31694											
DLGAP3	58512	broad.mit.edu	37	chr1	35365744	35365744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctttgggagatgtcttgGggctgccgtctgagtctccg	15	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35365744	T	T	35365744	3	4	15	1	0	0	0	0	1	0	0	0	4601	1232	43	2	1737	2	DLGAP3	1	35365744	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	14720	35365744	213884877	45	31695											
MACF1	23499	broad.mit.edu	37	chr1	39816610	39816610	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctaaggagcaatatgagGcgctccaggaagagacacgt	14	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39816610	A	A	39816610	3	1	15	1	0	0	0	0	1	0	0	0	9232	1203	42	4	11234	4	MACF1	1	39816610	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4450866	39816610	209434011	46	31696											
MACF1	23499	broad.mit.edu	37	chr1	39826501	39826501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccaaagcctctcctataGcctggctgagcgatcttctc	7	15	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39826501	T	T	39826501	3	4	15	1	0	0	0	0	1	0	0	0	9232	971	34	3	12416	3	MACF1	1	39826501	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	9891	39826501	209424120	47	31697											
MACF1	23499	broad.mit.edu	37	chr1	39910299	39910299	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggtgtcttccagagaattCgtagaattgatatctttcct	8	7	2	3	rs148361821	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39910299	A	A	39910299	1	1	15	0	1	0	0	0	0	0	0	0	9232	899	31	3		3	MACF1	1	39910299	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	83798	39910299	209340322	48	31698											
NT5C1A	84618	broad.mit.edu	37	chr1	40128985	40128985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttcacttagacttaccCtcatcaatggcttctcgcac	4	16	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40128985	A	A	40128985	3	1	15	1	0	0	0	0	1	0	0	0	10780	695	24	2	563	2	NT5C1A	1	40128985	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	218686	40128985	209121636	49	31699											
COL9A2	1298	broad.mit.edu	37	chr1	40776820	40776820	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcgtttgcccgcatgccccTgaagggaaggagagagctca	14	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40776820	A	A	40776820	5	1	15	1	0	0	0	0	0	0	1	0	3740	1594	55	5	1578	5	COL9A2	1	40776820	Splice_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	647835	40776820	208473801	50	31700											
ZNF643	65243	broad.mit.edu	37	chr1	40929215	40929215	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtagttcatcccttattaGacactgcaaaacacatttaa	4	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40929215	T	T	40929215	3	4	15	1	0	0	0	0	1	0	0	0	18186	942	33	3	1577	3	ZNF643	1	40929215	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	152395	40929215	208321406	51	31701											
NFYC	4802	broad.mit.edu	37	chr1	41236592	41236592	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctccccagaggacccgGccgacctcagcgcctcctgc	9	21	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41236592	T	T	41236592	1	4	15	0	1	0	0	0	0	0	0	0	10486	1218	42	3		3	NFYC	1	41236592	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	307377	41236592	208014029	52	31702											
KIAA0467	23334	broad.mit.edu	37	chr1	43896124	43896124	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgccgagattcaagggttcCactgccagcctctctcattg	9	14	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43896124	T	T	43896124	1	4	15	0	1	0	0	0	0	0	0	0	8248	609	21	4		4	KIAA0467	1	43896124	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2659532	43896124	205354497	53	31703											
IPO13	9670	broad.mit.edu	37	chr1	44432190	44432190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggggtggcaggtgagtgGgggggatggtccttggagct	23	5	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44432190	T	T	44432190	1	4	15	0	1	0	0	0	0	0	0	0	7864	1247	43	2		2	IPO13	1	44432190	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	536066	44432190	204818431	54	31704											
BEST4	266675	broad.mit.edu	37	chr1	45253505	45253505	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcgtcagtggacaaggGggtaggagcctgcagagcag	17	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45253505	T	T	45253505	1	4	15	0	1	0	0	0	0	0	0	0	1412	1247	43	2		2	BEST4	1	45253505	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	821315	45253505	203997116	55	31705											
MAST2	23139	broad.mit.edu	37	chr1	46488514	46488514	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctacatgcacctgttgtgtGatctgaggatactgctgaga	11	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46488514	T	T	46488514	1	4	15	0	1	0	0	0	0	0	0	0	9417	1305	45	3		3	MAST2	1	46488514	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1235009	46488514	202762107	56	31706											
RAD54L	8438	broad.mit.edu	37	chr1	46725742	46725742	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtatgagcctcccccgctGagcgctcatgaccagctgaa	10	15	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46725742	T	T	46725742	2	4	15	1	0	0	0	0	0	0	0	1	13101	1277	45	3		3	RAD54L	1	46725742	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	237228	46725742	202524879	57	31707											
CYP4B1	1580	broad.mit.edu	37	chr1	47279690	47279690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctactggctcaccccacatGgccgccgcttcctgcgggcc	10	19	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47279690	T	T	47279690	3	4	15	1	0	0	0	0	1	0	0	0	4218	1348	47	2	752	2	CYP4B1	1	47279690	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	553948	47279690	201970931	58	31708											
CYP4A11	1579	broad.mit.edu	37	chr1	47400232	47400232	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcagttggatcacttggtCtgtaccagaacaatggttac	9	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47400232	G	G	47400232	5	3	15	1	0	0	0	0	0	0	1	0	4216	927	32	4	793	4	CYP4A11	1	47400232	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	120542	47400232	201850389	59	31709											
CYP4Z1	199974	broad.mit.edu	37	chr1	47571865	47571865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctccgcctctacgcacCggtagtaaacatatcccggt	8	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47571865	A	A	47571865	3	1	15	1	0	0	0	0	1	0	0	0	4227	652	23	1	1167	1	CYP4Z1	1	47571865	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	171633	47571865	201678756	60	31710											
AGBL4	84871	broad.mit.edu	37	chr1	50311573	50311573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacaccagcaaatccacaCagggcagaagccctacaaat	6	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50311573	A	A	50311573	1	1	15	0	1	0	0	0	0	0	0	0	377	493	17	3		3	AGBL4	1	50311573	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2739708	50311573	198939048	61	31711											
ZYG11B	79699	broad.mit.edu	37	chr1	53237336	53237336	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggagaaagcacgtgacaGataaagccgttgaagccttt	12	8	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53237336	T	T	53237336	3	4	15	1	0	0	0	0	1	0	0	0	18382	942	33	3	851	3	ZYG11B	1	53237336	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2925763	53237336	196013285	62	31712											
PODN	127435	broad.mit.edu	37	chr1	53541610	53541610	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caactatctcaccaagatctAtgggctcacctttggccaga	7	13	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53541610	G	G	53541610	3	3	15	1	0	0	0	0	1	0	0	0	12273	449	16	5	710	5	PODN	1	53541610	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	304274	53541610	195709011	63	31713											
C1orf83	127428	broad.mit.edu	37	chr1	54520164	54520165	+	Missense_Mutation	DNP	GG	TT	TT													aagaaagattctggaggaaaGgtttacaagcaggccacgat							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54520165	TT	TT	54520164	3	4	15	1	0	0	0	0	1	0	0	0	2082	991	35	2	71	2	C1orf83	1	54520164	Missense_Mutation	DNP	GG	TCGA-05-4410-01A-21D-1855-08	978554	54520164	194730457	64	31714											
C1orf175	374977	broad.mit.edu	37	chr1	55145645	55145645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggtggccctgctgcccGtctccctcctggctagctcc	11	19	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55145645	T	T	55145645	3	4	15	1	0	0	0	0	1	0	0	0	2036	1145	40	3	2350	3	C1orf175	1	55145645	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	625481	55145645	194104976	65	31715											
C1orf168	199920	broad.mit.edu	37	chr1	57206348	57206348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttaatcccctcgtggaaaGggatttaaagggacttttta	11	6	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57206348	T	T	57206348	1	4	15	0	1	0	0	0	0	0	0	0	2032	1015	35	2		2	C1orf168	1	57206348	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2060703	57206348	192044273	66	31716											
C1orf168	199920	broad.mit.edu	37	chr1	57252712	57252712	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaagttacactttgttGcttataagttcactgcttct	5	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57252712	A	A	57252712	1	1	15	0	1	0	0	0	0	0	0	0	2032	1334	46	4		4	C1orf168	1	57252712	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	46364	57252712	191997909	67	31717											
C8B	732	broad.mit.edu	37	chr1	57415296	57415296	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttgactactgatgccaaGttcaaatattccaggtattt	6	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57415296	A	A	57415296	3	1	15	1	0	0	0	0	1	0	0	0	2442	1029	36	4	1007	4	C8B	1	57415296	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	162584	57415296	191835325	68	31718											
HOOK1	51361	broad.mit.edu	37	chr1	60287598	60287598	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actagtggagttgccatggcAcaagttcttcatcaaatgtg	10	8	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60287598	T	T	60287598	2	4	15	1	0	0	0	0	0	0	0	1	7349	146	6	5		5	HOOK1	1	60287598	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	2872302	60287598	188963023	69	31719											
C1orf87	127795	broad.mit.edu	37	chr1	60456364	60456364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatagctcctttaagtacCgcagtgctggctccaagagc	9	12	1	1	rs138699493		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60456364	A	A	60456364	3	1	15	1	0	0	0	0	1	0	0	0	2086	652	23	1	22	1	C1orf87	1	60456364	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	168766	60456364	188794257	70	31720											
L1TD1	54596	broad.mit.edu	37	chr1	62675725	62675725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcttcagggttggaggagGatgaggcctcagggctagag	19	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62675725	T	T	62675725	3	4	15	1	0	0	0	0	1	0	0	0	8661	1174	41	3	1285	3	L1TD1	1	62675725	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2219361	62675725	186574896	71	31721											
KANK4	163782	broad.mit.edu	37	chr1	62740301	62740301	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgctggatgctctcaagaGctggggccgtccactcccaa	11	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62740301	C	C	62740301	3	2	15	1	0	0	0	0	1	0	0	0	8049	971	34	4	2544	4	KANK4	1	62740301	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	64576	62740301	186510320	72	31722											
SGIP1	84251	broad.mit.edu	37	chr1	67105430	67105430	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttttattcaaatgttttcCttctaaattcattttcaaat	2	6	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67105430	T	T	67105430	1	4	15	0	1	0	0	0	0	0	0	0	14319	696	24	4		4	SGIP1	1	67105430	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	4365129	67105430	182145191	73	31723											
WDR78	79819	broad.mit.edu	37	chr1	67292659	67292659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgttgccatataataacaCcccaatctgcagaacagctt	5	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67292659	A	A	67292659	3	1	15	1	0	0	0	0	1	0	0	0	17455	507	18	3	375	3	WDR78	1	67292659	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	187229	67292659	181957962	74	31724											
C1orf173	127254	broad.mit.edu	37	chr1	75037751	75037751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcaggagctgctaaggCcccctctccatcttggcggt	11	14	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037751	A	A	75037751	3	1	15	1	0	0	0	0	1	0	0	0	2034	739	26	3	953	3	C1orf173	1	75037751	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	7745092	75037751	174212870	75	31725											
C1orf173	127254	broad.mit.edu	37	chr1	75038549	75038549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctaggtctatggatgCttcctcttcactttctccga	7	13	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75038549	A	A	75038549	3	1	15	1	0	0	0	0	1	0	0	0	2034	797	28	3	1751	3	C1orf173	1	75038549	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	798	75038549	174212072	76	31726											
SLC44A5	204962	broad.mit.edu	37	chr1	75862336	75862336	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacaaaaggcaaaaaaaaTatttgtaggggctgatgact	10	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75862336	C	C	75862336	1	2	15	0	1	0	0	0	0	0	0	0	14753	1421	49	5		5	SLC44A5	1	75862336	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	823787	75862336	173388285	77	31727											
RABGGTB	5876	broad.mit.edu	37	chr1	76255770	76255770	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatttagtccattctaccCaaaataccaatattaaaatg	3	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76255770	A	A	76255770	1	1	15	0	1	0	0	0	0	0	0	0	13076	609	21	2		2	RABGGTB	1	76255770	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	393434	76255770	172994851	78	31728											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77093074	77093074	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtttctcacacaccttaTtgttctgtgtgtgtgttctg	8	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77093074	C	C	77093074	1	2	15	0	1	0	0	0	0	0	0	0	15343	1508	52	5		5	ST6GALNAC3	1	77093074	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	837304	77093074	172157547	79	31729											
PTGFR	5737	broad.mit.edu	37	chr1	78958396	78958396	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacagttttgagagggagaTgacttgagtggttggctttt	15	4	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78958396	A	A	78958396	1	1	15	0	1	0	0	0	0	0	0	0	12855	1479	51	5		5	PTGFR	1	78958396	5'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	1865322	78958396	170292225	80	31730											
PTGFR	5737	broad.mit.edu	37	chr1	78958528	78958528	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctttccgtatttttttcaGtaatcttcatgacagtggga	9	7	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78958528	C	C	78958528	3	2	15	1	0	0	0	0	1	0	0	0	12855	1029	36	4	102	4	PTGFR	1	78958528	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	132	78958528	170292093	81	31731											
LPHN2	23266	broad.mit.edu	37	chr1	82433803	82433803	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagggctgcaagctggttGacactaataaaactcgaaca	9	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82433803	T	T	82433803	3	4	15	1	0	0	0	0	1	0	0	0	9003	1290	45	3	2434	3	LPHN2	1	82433803	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3475275	82433803	166816818	82	31732											
WDR63	126820	broad.mit.edu	37	chr1	85592309	85592309	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggatacattgatatctGggaccttctggagaaaaccc	10	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85592309	A	A	85592309	4	1	15	1	0	0	0	0	0	1	0	0	17441	1357	47	4	2302	4	WDR63	1	85592309	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3158506	85592309	163658312	83	31733											
COL24A1	255631	broad.mit.edu	37	chr1	86282601	86282601	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgataattaaaaattatttgGattgtagagatgctgaaaag	9	1	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86282601	T	T	86282601	1	4	15	0	1	0	0	0	0	0	0	0	3715	1189	41	3		3	COL24A1	1	86282601	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	690292	86282601	162968020	84	31734											
GBP2	2634	broad.mit.edu	37	chr1	89573837	89573837	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagagggagctggacaggCaaattttgctccttggactt	15	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89573837	A	A	89573837	1	1	15	0	1	0	0	0	0	0	0	0	6336	725	25	3		3	GBP2	1	89573837	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	3291236	89573837	159676784	85	31735											
BARHL2	343472	broad.mit.edu	37	chr1	91178042	91178042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcagcggcagccgccgCcgccgtagtgctgtccatgc	14	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91178042	A	A	91178042	3	1	15	1	0	0	0	0	1	0	0	0	1319	739	26	3	176	3	BARHL2	1	91178042	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1604205	91178042	158072579	86	31736											
HFM1	164045	broad.mit.edu	37	chr1	91790257	91790257	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgataaggtttcttttccaCtgattgtataaaatttcttc	5	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91790257	T	T	91790257	3	4	15	1	0	0	0	0	1	0	0	0	7150	565	20	4	1981	4	HFM1	1	91790257	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	612215	91790257	157460364	87	31737											
DNTTIP2	30836	broad.mit.edu	37	chr1	94342676	94342676	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaatatattttctgaacttCtgtgggagaaatcatcatca	6	6	5	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94342676	A	A	94342676	3	1	15	1	0	0	0	0	1	0	0	0	4722	913	32	3	1479	3	DNTTIP2	1	94342676	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2552419	94342676	154907945	88	31738											
ABCA4	24	broad.mit.edu	37	chr1	94466731	94466731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattactgcttccccctggGctggctcccctgtggaggat	12	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94466731	T	T	94466731	1	4	15	0	1	0	0	0	0	0	0	0	34	1218	42	3		3	ABCA4	1	94466731	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	124055	94466731	154783890	89	31739											
HIAT1	64645	broad.mit.edu	37	chr1	100515506	100515506	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgtctatcatgcagttatCgtcatctttttggagttttt	8	6	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100515506	A	A	100515506	2	1	15	1	0	0	0	0	0	0	0	1	7164	874	31	3		3	HIAT1	1	100515506	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	6048775	100515506	148735115	90	31740											
RTCD1	8634	broad.mit.edu	37	chr1	100752704	100752704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtttccagaataaaaacagGaccagttacactccatacgc	6	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100752704	T	T	100752704	3	4	15	1	0	0	0	0	1	0	0	0	13829	1174	41	3	1025	3	RTCD1	1	100752704	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	237198	100752704	148497917	91	31741											
CDC14A	8556	broad.mit.edu	37	chr1	100889851	100889851	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaaccccccctatcttcCattcaggtataactcctggt	4	16	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100889851	T	T	100889851	3	4	15	1	0	0	0	0	1	0	0	0	3086	594	21	4	401	4	CDC14A	1	100889851	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	137147	100889851	148360770	92	31742											
CDC14A	8556	broad.mit.edu	37	chr1	100960421	100960422	+	Nonsense_Mutation	DNP	GG	CT	CT													atgaaaaatggtataacccaGggagacaaactacgtgcctt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	100960422	CT	CT	100960421	4	2	15	1	0	0	0	0	0	1	0	0	3086	991	35	4	1246	4	CDC14A	1	100960421	Nonsense_Mutation	DNP	GG	TCGA-05-4410-01A-21D-1855-08	70570	100960421	148290200	93	31743											
OLFM3	118427	broad.mit.edu	37	chr1	102296165	102296165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttctagctgagtgcccCactgctgtccatcccactcc	6	17	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102296165	A	A	102296165	1	1	15	0	1	0	0	0	0	0	0	0	10949	609	21	2		2	OLFM3	1	102296165	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1335744	102296165	146954456	94	31744											
COL11A1	1301	broad.mit.edu	37	chr1	103377724	103377724	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaacttactcgttttccAggaggacctggtgggccagc	12	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103377724	T	T	103377724	2	4	15	1	0	0	0	0	0	0	0	1	3699	175	7	5		5	COL11A1	1	103377724	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1081559	103377724	145872897	95	31745											
COL11A1	1301	broad.mit.edu	37	chr1	103428282	103428282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagggccaggatgcccaCgttcccctattggaccagtc	12	14	0	0	rs147271219		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103428282	A	A	103428282	3	1	15	1	0	0	0	0	1	0	0	0	3699	536	19	3	2585	3	COL11A1	1	103428282	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	50558	103428282	145822339	96	31746											
COL11A1	1301	broad.mit.edu	37	chr1	103444661	103444661	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggtttgccagctactccCtagcaaagacagttcaattt	7	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103444661	G	G	103444661	5	3	15	1	0	0	0	0	0	0	1	0	3699	695	24	4	2950	4	COL11A1	1	103444661	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	16379	103444661	145805960	97	31747											
AMY1A	276	broad.mit.edu	37	chr1	104234119	104234119	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttttctacctagcatccCagaaggtaagtatagaggct	10	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104234119	T	T	104234119	4	4	15	1	0	0	0	0	0	1	0	0	591	595	21	4	2139	4	AMY1A	1	104234119	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	789458	104234119	145016502	98	31748											
NTNG1	22854	broad.mit.edu	37	chr1	107979327	107979327	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctcaatccatgatcgttgTaatggctcaggattttgtga	11	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107979327	A	A	107979327	4	1	15	1	0	0	0	0	0	1	0	0	10799	1644	57	5	1452	5	NTNG1	1	107979327	Nonsense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	3745208	107979327	141271294	99	31749											
VAV3	10451	broad.mit.edu	37	chr1	108315437	108315437	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccataaacacagtcatagaGatcttcttcatcttccacaa	3	13	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108315437	C	C	108315437	3	2	15	1	0	0	0	0	1	0	0	0	17260	942	33	4	2185	4	VAV3	1	108315437	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	336110	108315437	140935184	100	31750											
CELSR2	1952	broad.mit.edu	37	chr1	109811510	109811510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttccttagtcatctccGtagtgcgcttggacaaaggg	10	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109811510	T	T	109811510	3	4	15	1	0	0	0	0	1	0	0	0	3252	1145	40	3	6585	3	CELSR2	1	109811510	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1496073	109811510	139439111	101	31751											
AHCYL1	10768	broad.mit.edu	37	chr1	110558988	110558988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatcagctctccaaagctGggaagctctgtgttccggcc	11	12	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110558988	T	T	110558988	3	4	15	1	0	0	0	0	1	0	0	0	410	1348	47	2	835	2	AHCYL1	1	110558988	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	747478	110558988	138691633	102	31752											
SLC6A17	388662	broad.mit.edu	37	chr1	110734571	110734571	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgtgtctcttttcttcctCctgccttggtcttctgccat	6	14	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110734571	T	T	110734571	1	4	15	0	1	0	0	0	0	0	0	0	14794	870	30	4		4	SLC6A17	1	110734571	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	175583	110734571	138516050	103	31753											
KCNC4	3749	broad.mit.edu	37	chr1	110768631	110768631	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgatgccaacgcagtgctGtctgatgaggagggagctgg	18	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110768631	A	A	110768631	2	1	15	1	0	0	0	0	0	0	0	1	8087	1364	48	4		4	KCNC4	1	110768631	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	34060	110768631	138481990	104	31754											
KCNC4	3749	broad.mit.edu	37	chr1	110768730	110768730	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccactcgagacagaaaCaagaaggcagctgcctgctt	9	13	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110768730	T	T	110768730	2	4	15	1	0	0	0	0	0	0	0	1	8087	477	17	4		4	KCNC4	1	110768730	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	99	110768730	138481891	105	31755											
C1orf88	128344	broad.mit.edu	37	chr1	111893788	111893789	+	Intron	INS	-	TT	TT													ttcacctctataatgtacagINStttttttttttttttttttt					rs11354622		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	111893789	TT	TT	111893788	6	5	15	0	1	1	1	0	0	0	0	0	2087	1044	36	0		0	C1orf88	1	111893788	Intron	INS	-	TCGA-05-4410-01A-21D-1855-08	1125058	111893788	137356833	106	31756											
KCND3	3752	broad.mit.edu	37	chr1	112319769	112319769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtcttcttactacgacGggagcagcaggtggtagtga	15	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112319769	T	T	112319769	3	4	15	1	0	0	0	0	1	0	0	0	8090	1116	39	1	330	1	KCND3	1	112319769	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	425981	112319769	136930852	107	31757											
FAM19A3	284467	broad.mit.edu	37	chr1	113264808	113264808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgcccaggtgcacagGggagcttctgcctggagctg	17	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113264808	T	T	113264808	1	4	15	0	1	0	0	0	0	0	0	0	5580	1247	43	2		2	FAM19A3	1	113264808	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	945039	113264808	135985813	108	31758											
MAN1A2	10905	broad.mit.edu	37	chr1	118045579	118045579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagcagagcttttttcttGctgaaacattaaagtaagta	7	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118045579	T	T	118045579	3	4	15	1	0	0	0	0	1	0	0	0	9303	1319	46	3	1826	3	MAN1A2	1	118045579	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4780771	118045579	131205042	109	31759											
WDR3	10885	broad.mit.edu	37	chr1	118481001	118481001	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagctttagacattattgaaGcatatgttccttttaaagca	7	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118481001	C	C	118481001	1	2	15	0	1	0	0	0	0	0	0	0	17412	986	34	4		4	WDR3	1	118481001	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	435422	118481001	130769620	110	31760											
SPAG17	200162	broad.mit.edu	37	chr1	118512669	118512669	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacacaacagatgacataTaggacttacaggtccaggtt	8	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118512669	C	C	118512669	1	2	15	0	1	0	0	0	0	0	0	0	15095	1421	49	5		5	SPAG17	1	118512669	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	31668	118512669	130737952	111	31761											
SPAG17	200162	broad.mit.edu	37	chr1	118727642	118727642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctaggagggtctggccGggcctctggcattgccgggg	18	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118727642	T	T	118727642	1	4	15	0	1	0	0	0	0	0	0	0	15095	1131	39	1		1	SPAG17	1	118727642	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	214973	118727642	130522979	112	31762											
HAO2	51179	broad.mit.edu	37	chr1	119929175	119929175	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcagctctctaaatgtgTctcatctttggaatgcatca	8	9	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119929175	C	C	119929175	1	2	15	0	1	0	0	0	0	0	0	0	7018	1682	58	5		5	HAO2	1	119929175	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1201533	119929175	129321446	113	31763											
REG4	83998	broad.mit.edu	37	chr1	120342273	120342273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtccttgttataggccGggaggccattccccaaaaag	11	11	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120342273	T	T	120342273	1	4	15	0	1	0	0	0	0	0	0	0	13322	1131	39	1		1	REG4	1	120342273	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	413098	120342273	128908348	114	31764											
NOTCH2	4853	broad.mit.edu	37	chr1	120461117	120461117	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcgggcagccaggatcagGggtgtagtaccatcattcat	14	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120461117	A	A	120461117	2	1	15	1	0	0	0	0	0	0	0	1	10643	1219	43	4		4	NOTCH2	1	120461117	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	118844	120461117	128789504	115	31765											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857556	144857556	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagagacaacaaaaggttgTttgcattaatcactttccat	6	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144857556	A	A	144857556	1	1	15	0	1	0	0	0	0	0	0	0	11737	1740	60	5		5	PDE4DIP	1	144857556	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	24396439	144857556	104393065	116	31766											
NBPF10	100132406	broad.mit.edu	37	chr1	145281866	145281866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagttttatgggcccactGtggtccataaactgagcagg	13	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145281866	T	T	145281866	1	4	15	0	1	0	0	0	0	0	0	0	10287	1392	48	3		3	NBPF10	1	145281866	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	424310	145281866	103968755	117	31767											
ANKRD35	148741	broad.mit.edu	37	chr1	145558896	145558896	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcagctatctgctcacagcTgctgcagcgaggcgcccgag	13	15	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145558896	A	A	145558896	3	1	15	1	0	0	0	0	1	0	0	0	664	1580	55	5	541	5	ANKRD35	1	145558896	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	277030	145558896	103691725	118	31768											
NBPF10	100132406	broad.mit.edu	37	chr1	145563173	145563173	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagtttactaacctgaatcCagcaacctttattgcagcag	8	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145563173	G	G	145563173	1	3	15	0	1	0	0	0	0	0	0	0	10287	609	21	4		4	NBPF10	1	145563173	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	4277	145563173	103687448	119	31769											
GJA8	2703	broad.mit.edu	37	chr1	147380368	147380368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgatgtacgtggggcacGcggtgcactacgtccgcatg	14	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147380368	T	T	147380368	3	4	15	1	0	0	0	0	1	0	0	0	6469	1087	38	3	288	3	GJA8	1	147380368	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1817195	147380368	101870253	120	31770											
SF3B4	10262	broad.mit.edu	37	chr1	149895855	149895855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgggggtccagcgtggGgatgtcctaagccatgaggg	18	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149895855	T	T	149895855	3	4	15	1	0	0	0	0	1	0	0	0	14266	1232	43	2	317	2	SF3B4	1	149895855	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2515487	149895855	99354766	121	31771											
TARS2	80222	broad.mit.edu	37	chr1	150469316	150469316	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttcttcttccatgaactgAgccctgggagctgcttcttc	8	13	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150469316	T	T	150469316	3	4	15	1	0	0	0	0	1	0	0	0	15679	304	11	5	986	5	TARS2	1	150469316	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	573461	150469316	98781305	122	31772											
FLG	2312	broad.mit.edu	37	chr1	152277576	152277576	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagagtgcccgtgaccGgctctgtcttcgtgatggga	14	11	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152277576	A	A	152277576	2	1	15	1	0	0	0	0	0	0	0	1	5979	1103	39	4		4	FLG	1	152277576	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1808260	152277576	96973045	123	31773											
FLG2	388698	broad.mit.edu	37	chr1	152326249	152326249	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctctgtcttccagatgttCtggaacctgtctgtgtagac	9	10	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152326249	A	A	152326249	3	1	15	1	0	0	0	0	1	0	0	0	5980	913	32	3	3166	3	FLG2	1	152326249	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	48673	152326249	96924372	124	31774											
CRNN	49860	broad.mit.edu	37	chr1	152382339	152382339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgactcagtgcttgcccCagtctgggcctgtcctcccg	10	17	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152382339	A	A	152382339	3	1	15	1	0	0	0	0	1	0	0	0	3924	594	21	2	272	2	CRNN	1	152382339	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	56090	152382339	96868282	125	31775											
LCE3E	353145	broad.mit.edu	37	chr1	152538380	152538380	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcttgtttcctccaaagatCgcttgtctcagcatcaggat	7	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152538380	T	T	152538380	1	4	15	0	1	0	0	0	0	0	0	0	8745	899	31	4		4	LCE3E	1	152538380	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	156041	152538380	96712241	126	31776											
LCE2D	353141	broad.mit.edu	37	chr1	152636662	152636662	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccaaaatgtccacctaaGtgtccccccaaatgcccacc	4	19	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152636662	A	A	152636662	2	1	15	1	0	0	0	0	0	0	0	1	8740	1020	36	4		4	LCE2D	1	152636662	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	98282	152636662	96613959	127	31777											
SPRR1A	6698	broad.mit.edu	37	chr1	152957896	152957896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcccaaggttccagagCcctgccagcccaaggtgcct	11	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152957896	A	A	152957896	3	1	15	1	0	0	0	0	1	0	0	0	15213	739	26	3	192	3	SPRR1A	1	152957896	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	321234	152957896	96292725	128	31778											
LELP1	149018	broad.mit.edu	37	chr1	153177398	153177398	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttcatcctgccctccccAgccctgcaccaagccctgtc	5	22	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153177398	T	T	153177398	3	4	15	1	0	0	0	0	1	0	0	0	8790	188	7	5	217	5	LELP1	1	153177398	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	219502	153177398	96073223	129	31779											
PGLYRP3	114771	broad.mit.edu	37	chr1	153274952	153274952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtttcggacgacagtctGgcagtctgtggatacagtgc	13	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153274952	T	T	153274952	3	4	15	1	0	0	0	0	1	0	0	0	11890	1357	47	2	376	2	PGLYRP3	1	153274952	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	97554	153274952	95975669	130	31780											
IL6R	3570	broad.mit.edu	37	chr1	154422369	154422369	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagaaacaggctgatggtGaggaatgtctcttttaggca	13	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154422369	T	T	154422369	1	4	15	0	1	0	0	0	0	0	0	0	7772	1305	45	3		3	IL6R	1	154422369	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1147417	154422369	94828252	131	31781											
THBS3	7059	broad.mit.edu	37	chr1	155165670	155165670	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctgcctccggaatggctCaaagtcctcaggcactgtgt	11	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155165670	G	G	155165670	3	3	15	1	0	0	0	0	1	0	0	0	15978	835	29	4	41	4	THBS3	1	155165670	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	743301	155165670	94084951	132	31782											
CLK2	1196	broad.mit.edu	37	chr1	155233067	155233067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcggctcagcccgaaggCgggcgaagaaaggatgctga	18	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155233067	A	A	155233067	3	1	15	1	0	0	0	0	1	0	0	0	3569	768	27	3	61	3	CLK2	1	155233067	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	67397	155233067	94017554	133	31783											
DAP3	7818	broad.mit.edu	37	chr1	155699058	155699058	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgtgctgaaagagctaaaGaggcaaagttctttgggtat	12	4	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155699058	A	A	155699058	2	1	15	1	0	0	0	0	0	0	0	1	4267	933	33	4		4	DAP3	1	155699058	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	465991	155699058	93551563	134	31784											
KIAA0907	22889	broad.mit.edu	37	chr1	155891679	155891679	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtacagcagtattaatctGattcacaaatctagagtatt	7	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155891679	C	C	155891679	3	2	15	1	0	0	0	0	1	0	0	0	8269	1299	45	4	883	4	KIAA0907	1	155891679	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	192621	155891679	93358942	135	31785											
NTRK1	4914	broad.mit.edu	37	chr1	156846197	156846197	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccgcttccatccaggcactGaaggaggcgtccgagagtgc	14	13	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156846197	A	A	156846197	2	1	15	1	0	0	0	0	0	0	0	1	10801	1277	45	4		4	NTRK1	1	156846197	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	954518	156846197	92404424	136	31786											
FCRL3	115352	broad.mit.edu	37	chr1	157670328	157670328	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgtctcaccaaaagccCgacttatctccaagaaggag	8	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157670328	A	A	157670328	1	1	15	0	1	0	0	0	0	0	0	0	5853	667	23	1		1	FCRL3	1	157670328	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	824131	157670328	91580293	137	31787											
CD5L	922	broad.mit.edu	37	chr1	157805936	157805936	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccccaccagccgcactccaGatggagacgctgcaaagaga	10	16	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157805936	T	T	157805936	3	4	15	1	0	0	0	0	1	0	0	0	3057	942	33	3	994	3	CD5L	1	157805936	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	135608	157805936	91444685	138	31788											
KIRREL	55243	broad.mit.edu	37	chr1	158064100	158064101	+	Splice_Site	DNP	CA	AG	AG													gtcccactcctgctgctccaCagtcgtttaaggatgatgtg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	158064101	AG	AG	158064100	5	1	15	1	0	0	0	0	0	0	1	0	8395	493	17	3		3	KIRREL	1	158064100	Splice_Site	DNP	CA	TCGA-05-4410-01A-21D-1855-08	258164	158064100	91186521	139	31789											
CD1C	911	broad.mit.edu	37	chr1	158262102	158262102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcataagaagcacttgccCccgatttctcttgggtctcc	7	14	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262102	A	A	158262102	3	1	15	1	0	0	0	0	1	0	0	0	3006	623	22	2	567	2	CD1C	1	158262102	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	198002	158262102	90988519	140	31790											
OR6Y1	391112	broad.mit.edu	37	chr1	158516969	158516969	+	Frame_Shift_Del	DEL	G	-	-													ccacttcctctgcaatgtatGgtctttctgagggctgcctt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158516969	-	-	158516969	7	5	15	1	0	1	0	1	0	0	0	0	11307	1335	47	0	52	0	OR6Y1	1	158516969	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	254867	158516969	90733652	141	31791											
OR10X1	128367	broad.mit.edu	37	chr1	158549326	158549326	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtttgtgccaccaagtcCcaagaagaagcacatctgta	8	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158549326	T	T	158549326	3	4	15	1	0	0	0	0	1	0	0	0	11016	632	22	4	611	4	OR10X1	1	158549326	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	32357	158549326	90701295	142	31792											
SPTA1	6708	broad.mit.edu	37	chr1	158585297	158585297	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattttattttcaggaatcTtcttgttctctgtgaaaaga	7	5	4	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158585297	G	G	158585297	1	3	15	0	1	0	0	0	0	0	0	0	15234	1624	56	5		5	SPTA1	1	158585297	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	35971	158585297	90665324	143	31793											
SPTA1	6708	broad.mit.edu	37	chr1	158593041	158593041	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgcaagggtcattcacatCtgggttccaccagattttaa	10	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158593041	A	A	158593041	1	1	15	0	1	0	0	0	0	0	0	0	15234	928	32	3		3	SPTA1	1	158593041	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7744	158593041	90657580	144	31794											
SPTA1	6708	broad.mit.edu	37	chr1	158596725	158596725	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagctattgccttagccaGagaaggggtcttttcattca	10	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158596725	A	A	158596725	2	1	15	1	0	0	0	0	0	0	0	1	15234	933	33	4		4	SPTA1	1	158596725	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	3684	158596725	90653896	145	31795											
SPTA1	6708	broad.mit.edu	37	chr1	158613332	158613332	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggattcagaagatatactcAgggtcaaataatatatgcct	8	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158613332	T	T	158613332	1	4	15	0	1	0	0	0	0	0	0	0	15234	203	7	5		5	SPTA1	1	158613332	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	16607	158613332	90637289	146	31796											
SPTA1	6708	broad.mit.edu	37	chr1	158645888	158645888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgctattatatctgggcCctgtagagataggtagagca	11	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158645888	A	A	158645888	1	1	15	0	1	0	0	0	0	0	0	0	15234	638	22	2		2	SPTA1	1	158645888	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	32556	158645888	90604733	147	31797											
SPTA1	6708	broad.mit.edu	37	chr1	158647625	158647625	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatggcttcagtcacatccCtgcagtcattaacaagagct	9	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158647625	A	A	158647625	5	1	15	1	0	0	0	0	0	0	1	0	15234	695	24	2	6631	2	SPTA1	1	158647625	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	1737	158647625	90602996	148	31798											
SPTA1	6708	broad.mit.edu	37	chr1	158656230	158656230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagaaagtttaaaggaaacAtctttcctaataatattaat	4	4	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158656230	G	G	158656230	1	3	15	0	1	0	0	0	0	0	0	0	15234	232	8	5		5	SPTA1	1	158656230	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	8605	158656230	90594391	149	31799											
OR6N2	81442	broad.mit.edu	37	chr1	158746535	158746535	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcctcttgatagctttaatGatttccttgttacgaagact	7	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158746535	A	A	158746535	2	1	15	1	0	0	0	0	0	0	0	1	11301	1280	45	4		4	OR6N2	1	158746535	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	90305	158746535	90504086	150	31800											
APCS	325	broad.mit.edu	37	chr1	159557685	159557685	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcatcctggtcactgcttCtgctataacagccctaggcc	7	16	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159557685	T	T	159557685	1	4	15	0	1	0	0	0	0	0	0	0	769	928	32	4		4	APCS	1	159557685	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	811150	159557685	89692936	151	31801											
CASQ1	844	broad.mit.edu	37	chr1	160165750	160165750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaggccttcatggaagagCctgtgaccatcccagacaag	11	12	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160165750	A	A	160165750	3	1	15	1	0	0	0	0	1	0	0	0	2706	739	26	3	737	3	CASQ1	1	160165750	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	608065	160165750	89084871	152	31802											
NCSTN	23385	broad.mit.edu	37	chr1	160326401	160326401	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcactcaggtgacgggcctCttcaacattacatcgctgtc	9	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160326401	T	T	160326401	3	4	15	1	0	0	0	0	1	0	0	0	10336	913	32	4	1709	4	NCSTN	1	160326401	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	160651	160326401	88924220	153	31803											
PPOX	5498	broad.mit.edu	37	chr1	161138212	161138212	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgctccttagtcctagtctCacccttaaggtggcgtctct	8	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161138212	G	G	161138212	1	3	15	0	1	0	0	0	0	0	0	0	12449	841	29	4		4	PPOX	1	161138212	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	811811	161138212	88112409	154	31804											
NR1I3	9970	broad.mit.edu	37	chr1	161205726	161205726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgacttcacagcttccaGcaaaggggcaggtgggacca	13	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161205726	T	T	161205726	3	4	15	1	0	0	0	0	1	0	0	0	10716	971	34	3	1047	3	NR1I3	1	161205726	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	67514	161205726	88044895	155	31805											
FCGR2A	2212	broad.mit.edu	37	chr1	161479793	161479793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaccacagtcacagtgGtgattaccactgcacaggaa	9	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161479793	T	T	161479793	3	4	15	1	0	0	0	0	1	0	0	0	5838	1261	44	3	562	3	FCGR2A	1	161479793	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	274067	161479793	87770828	156	31806											
FCRLA	84824	broad.mit.edu	37	chr1	161680550	161680550	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccatgccctcttcagCtgccagttttgagacgctgc	11	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161680550	T	T	161680550	3	4	15	1	0	0	0	0	1	0	0	0	5857	811	28	4	159	4	FCRLA	1	161680550	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	200757	161680550	87570071	157	31807											
NOS1AP	9722	broad.mit.edu	37	chr1	162337164	162337164	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggacgagagcgaggagcgCgactcgtggtcccaggagga	18	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162337164	A	A	162337164	2	1	15	1	0	0	0	0	0	0	0	1	10637	755	27	3		3	NOS1AP	1	162337164	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	656614	162337164	86913457	158	31808											
RGS5	8490	broad.mit.edu	37	chr1	163122550	163122550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaatttattaatttaCttaacaaatattgtatccat	4	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163122550	A	A	163122550	1	1	15	0	1	0	0	0	0	0	0	0	13417	580	20	3		3	RGS5	1	163122550	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	785386	163122550	86128071	159	31809											
RGS5	8490	broad.mit.edu	37	chr1	163131821	163131821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaagtaggcattgaaccaCatgtaccagcaataactact	7	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163131821	A	A	163131821	1	1	15	0	1	0	0	0	0	0	0	0	13417	493	17	3		3	RGS5	1	163131821	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	9271	163131821	86118800	160	31810											
LMX1A	4009	broad.mit.edu	37	chr1	165173231	165173231	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacaatcacccaggttactGagggaggtgtcgtcgctatc	11	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165173231	A	A	165173231	2	1	15	1	0	0	0	0	0	0	0	1	8935	1277	45	4		4	LMX1A	1	165173231	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2041410	165173231	84077390	161	31811											
ILDR2	387597	broad.mit.edu	37	chr1	166892009	166892009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggaaattgctgtcctcCtcatgtagggagctgagttc	13	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166892009	A	A	166892009	3	1	15	1	0	0	0	0	1	0	0	0	7780	680	24	2	899	2	ILDR2	1	166892009	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1718778	166892009	82358612	162	31812											
MAEL	84944	broad.mit.edu	37	chr1	166962130	166962130	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtgtatggttttttttttTaaatcttgactttatttgat	6	3	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166962130	A	A	166962130	1	1	15	0	1	0	0	0	0	0	0	0	9242	1769	61	5		5	MAEL	1	166962130	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	70121	166962130	82288491	163	31813											
DCAF6	55827	broad.mit.edu	37	chr1	167956802	167956802	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggaactgttaggtggtttGatacacgcatcaaaactagc	10	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167956802	A	A	167956802	3	1	15	1	0	0	0	0	1	0	0	0	4307	1290	45	4	526	4	DCAF6	1	167956802	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	994672	167956802	81293819	164	31814											
F5	2153	broad.mit.edu	37	chr1	169500372	169500372	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatcggagctaagatatAaggtacaaaataacttatgt	7	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169500372	T	T	169500372	1	4	15	0	1	0	0	0	0	0	0	0	5391	377	13	5		5	F5	1	169500372	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1543570	169500372	79750249	165	31815											
SELP	6403	broad.mit.edu	37	chr1	169582414	169582414	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaacagcaatgtcatgtttGctgaaagctgtaactatttg	8	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169582414	C	C	169582414	1	2	15	0	1	0	0	0	0	0	0	0	14132	1334	46	4		4	SELP	1	169582414	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	82042	169582414	79668207	166	31816											
PRRX1	5396	broad.mit.edu	37	chr1	170705133	170705133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctggggcacagacttgCagctttgtgaaactaatgcc	10	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170705133	A	A	170705133	1	1	15	0	1	0	0	0	0	0	0	0	12718	725	25	3		3	PRRX1	1	170705133	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1122719	170705133	78545488	167	31817											
FASLG	356	broad.mit.edu	37	chr1	172628540	172628540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaccactgcctccactaCcgctgccacccctgaagaag	7	20	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172628540	A	A	172628540	3	1	15	1	0	0	0	0	1	0	0	0	5739	507	18	3	201	3	FASLG	1	172628540	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1923407	172628540	76622081	168	31818											
ANKRD45	339416	broad.mit.edu	37	chr1	173594012	173594012	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcattaatggaagcttctGtatgggtttccaaccactca	8	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173594012	C	C	173594012	3	2	15	1	0	0	0	0	1	0	0	0	673	1377	48	4	164	4	ANKRD45	1	173594012	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	965472	173594012	75656609	169	31819											
RABGAP1L	9910	broad.mit.edu	37	chr1	174274333	174274333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacaatcttcagaggagGtgtgtgtgttgtgggtagaa	14	4	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174274333	T	T	174274333	1	4	15	0	1	0	0	0	0	0	0	0	13073	1276	44	3		3	RABGAP1L	1	174274333	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	680321	174274333	74976288	170	31820											
TNR	7143	broad.mit.edu	37	chr1	175306627	175306627	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggtagactagaacactgagGacgcttctgtgcaaggagag	14	7	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175306627	C	C	175306627	1	2	15	0	1	0	0	0	0	0	0	0	16461	1189	41	4		4	TNR	1	175306627	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1032294	175306627	73943994	171	31821											
TNR	7143	broad.mit.edu	37	chr1	175331703	175331703	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggaggagcaccccgaaatgGagccttagcctccagaacct	11	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175331703	C	C	175331703	1	2	15	0	1	0	0	0	0	0	0	0	16461	1189	41	4		4	TNR	1	175331703	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	25076	175331703	73918918	172	31822											
TNR	7143	broad.mit.edu	37	chr1	175334111	175334111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggctactgtgaaaacccCtttcatcacctgctgccaag	7	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334111	A	A	175334111	1	1	15	0	1	0	0	0	0	0	0	0	16461	696	24	2		2	TNR	1	175334111	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2408	175334111	73916510	173	31823											
TNR	7143	broad.mit.edu	37	chr1	175372526	175372526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccgtccacgcagagcccCcgggagctgcagtctgttgg	13	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372526	A	A	175372526	2	1	15	1	0	0	0	0	0	0	0	1	16461	610	22	2		2	TNR	1	175372526	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	38415	175372526	73878095	174	31824											
RFWD2	64326	broad.mit.edu	37	chr1	176105681	176105681	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttctggatctgttccagTtgctgcagattaaatagaga	9	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176105681	C	C	176105681	2	2	15	1	0	0	0	0	0	0	0	1	13368	1722	60	5		5	RFWD2	1	176105681	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	733155	176105681	73144940	175	31825											
PAPPA2	60676	broad.mit.edu	37	chr1	176564576	176564576	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctatgatgggggtgactgCcgcctgcagggccgctgcta	17	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176564576	G	G	176564576	3	3	15	1	0	0	0	0	1	0	0	0	11527	747	26	4	1842	4	PAPPA2	1	176564576	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	458895	176564576	72686045	176	31826											
PAPPA2	60676	broad.mit.edu	37	chr1	176668331	176668331	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgacggtcccctgccccAcagaaggctgtagcttggag	12	13	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176668331	G	G	176668331	3	3	15	1	0	0	0	0	1	0	0	0	11527	159	6	5	2921	5	PAPPA2	1	176668331	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	103755	176668331	72582290	177	31827											
PAPPA2	60676	broad.mit.edu	37	chr1	176679023	176679023	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgcagaattctcttcagtGggctggagaagaagtgttgt	13	5	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176679023	C	C	176679023	1	2	15	0	1	0	0	0	0	0	0	0	11527	1363	47	4		4	PAPPA2	1	176679023	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	10692	176679023	72571598	178	31828											
PAPPA2	60676	broad.mit.edu	37	chr1	176679225	176679225	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacactcccaaaggatacttGgatcaatgggctacccgggc	10	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176679225	C	C	176679225	3	2	15	1	0	0	0	0	1	0	0	0	11527	1339	47	4	3655	4	PAPPA2	1	176679225	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	202	176679225	72571396	179	31829											
PAPPA2	60676	broad.mit.edu	37	chr1	176769207	176769207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccccttagagcattgtgtGcactggccggcgtcaatggc	12	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176769207	T	T	176769207	3	4	15	1	0	0	0	0	1	0	0	0	11527	1319	46	3	5272	3	PAPPA2	1	176769207	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	89982	176769207	72481414	180	31830											
ASTN1	460	broad.mit.edu	37	chr1	176934192	176934192	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcaggtggtcgtgacaactCaaggtgtttcctattttata	10	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176934192	A	A	176934192	1	1	15	0	1	0	0	0	0	0	0	0	1068	841	29	3		3	ASTN1	1	176934192	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	164985	176934192	72316429	181	31831											
FAM5B	57795	broad.mit.edu	37	chr1	177250431	177250432	+	Missense_Mutation	DNP	CC	AG	AG													taattctccagttggactacCcatatactcaaggttcccag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	177250432	AG	AG	177250431	3	1	15	1	0	0	0	0	1	0	0	0	5644	623	22	2	2145	2	FAM5B	1	177250431	Missense_Mutation	DNP	CC	TCGA-05-4410-01A-21D-1855-08	316239	177250431	72000190	182	31832											
TOR3A	64222	broad.mit.edu	37	chr1	179054768	179054768	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttcctgtccttaggcttaGagtgggacctgaatgtgcgg	13	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179054768	A	A	179054768	3	1	15	1	0	0	0	0	1	0	0	0	16500	943	33	4	389	4	TOR3A	1	179054768	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1804337	179054768	70195853	183	31833											
C1orf125	126859	broad.mit.edu	37	chr1	179339140	179339140	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgccttgtagaccatgtcTggcatcaccctgttcgaagg	10	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179339140	C	C	179339140	3	2	15	1	0	0	0	0	1	0	0	0	2013	1580	55	5	311	5	C1orf125	1	179339140	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	284372	179339140	69911481	184	31834											
QSOX1	5768	broad.mit.edu	37	chr1	180159623	180159623	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccaggggagtgagccgcAtttccggggctttccctgct	14	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180159623	G	G	180159623	3	3	15	1	0	0	0	0	1	0	0	0	12991	217	8	5	1234	5	QSOX1	1	180159623	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	820483	180159623	69090998	185	31835											
XPR1	9213	broad.mit.edu	37	chr1	180804231	180804231	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatcgctggtgtaaaccaaGatatattgggaaggataaat	10	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180804231	C	C	180804231	1	2	15	0	1	0	0	0	0	0	0	0	17578	957	33	4		4	XPR1	1	180804231	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	644608	180804231	68446390	186	31836											
KIAA1614	57710	broad.mit.edu	37	chr1	180885948	180885948	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatccacattcccagcccaAggacaggaaggtcctaccct	7	16	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180885948	T	T	180885948	3	4	15	1	0	0	0	0	1	0	0	0	8318	63	3	5	715	5	KIAA1614	1	180885948	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	81717	180885948	68364673	187	31837											
CACNA1E	777	broad.mit.edu	37	chr1	181479550	181479550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagttgtgtgtttatgggCacggccatcttggaggctgt	15	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181479550	A	A	181479550	1	1	15	0	1	0	0	0	0	0	0	0	2568	725	25	3		3	CACNA1E	1	181479550	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	593602	181479550	67771071	188	31838											
ZNF648	127665	broad.mit.edu	37	chr1	182026091	182026091	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcatgttgcgctggtgtTtgcgcaggtccgaagagcgc	16	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182026091	A	A	182026091	3	1	15	1	0	0	0	0	1	0	0	0	18190	1841	64	5	655	5	ZNF648	1	182026091	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	546541	182026091	67224530	189	31839											
GLT25D2	23127	broad.mit.edu	37	chr1	183933277	183933277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaattaaataagtggttGtttcaggtatgtctatagac	9	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183933277	T	T	183933277	1	4	15	0	1	0	0	0	0	0	0	0	6531	1392	48	3		3	GLT25D2	1	183933277	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1907186	183933277	65317344	190	31840											
EDEM3	80267	broad.mit.edu	37	chr1	184692959	184692960	+	Frame_Shift_Ins	INS	-	A	A													acttcgctgtcttttttcccINSagagaaaatcaagagctttt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184692960	A	A	184692959	7	5	15	1	0	1	1	0	0	0	0	0	4953	595	21	0	2071	0	EDEM3	1	184692959	Frame_Shift_Ins	INS	-	TCGA-05-4410-01A-21D-1855-08	759682	184692959	64557662	191	31841											
HMCN1	83872	broad.mit.edu	37	chr1	186031015	186031015	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacggctgatgcagaccacaAtggaagatgctggccaatat	11	9	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186031015	G	G	186031015	3	3	15	1	0	0	0	0	1	0	0	0	7287	101	4	5	7531	5	HMCN1	1	186031015	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1338056	186031015	63219606	192	31842											
FAM5C	339479	broad.mit.edu	37	chr1	190067407	190067407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgcaaaatcaggtccCgaattgcttcagggtcaaag	10	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067407	A	A	190067407	3	1	15	1	0	0	0	0	1	0	0	0	5645	652	23	1	262	1	FAM5C	1	190067407	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4036392	190067407	59183214	193	31843											
FAM5C	339479	broad.mit.edu	37	chr1	190067891	190067891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaaccagctattgaggcGcatgtcattgctgataaaaa	8	8	2	2	rs147799875		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067891	T	T	190067891	3	4	15	1	0	0	0	0	1	0	0	0	5645	1087	38	3	746	3	FAM5C	1	190067891	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	484	190067891	59182730	194	31844											
FAM5C	339479	broad.mit.edu	37	chr1	190250803	190250803	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatgttgcggaagaattcaGgggcaagaggcagaggagag	17	4	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190250803	C	C	190250803	3	2	15	1	0	0	0	0	1	0	0	0	5645	1000	35	4	2010	4	FAM5C	1	190250803	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	182912	190250803	58999818	195	31845											
KCNT2	343450	broad.mit.edu	37	chr1	196448362	196448362	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacagacttatcaatgccaCtgaaacctgaaagataaatt	5	8	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196448362	G	G	196448362	3	3	15	1	0	0	0	0	1	0	0	0	8162	565	20	4	3172	4	KCNT2	1	196448362	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	6197559	196448362	52802259	196	31846											
F13B	2165	broad.mit.edu	37	chr1	197026157	197026157	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acataccaacacactcaggaGgaagtgtccattttccacga	7	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197026157	C	C	197026157	3	2	15	1	0	0	0	0	1	0	0	0	5384	1000	35	4	852	4	F13B	1	197026157	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	577795	197026157	52224464	197	31847											
F13B	2165	broad.mit.edu	37	chr1	197026458	197026458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattttccatcttcacaacGtatttctgctgacccatgga	5	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197026458	T	T	197026458	3	4	15	1	0	0	0	0	1	0	0	0	5384	1145	40	3	1070	3	F13B	1	197026458	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	301	197026458	52224163	198	31848											
CRB1	23418	broad.mit.edu	37	chr1	197446847	197446847	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actattggctcagtgactgtCgccttgttactgatcctctt	8	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197446847	T	T	197446847	2	4	15	1	0	0	0	0	0	0	0	1	3880	871	31	4		4	CRB1	1	197446847	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	420389	197446847	51803774	199	31849											
DENND1B	163486	broad.mit.edu	37	chr1	197510276	197510276	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaacagattataatcTaacattctattttcagggat	5	5	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197510276	C	C	197510276	1	2	15	0	1	0	0	0	0	0	0	0	4467	1537	53	5		5	DENND1B	1	197510276	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	63429	197510276	51740345	200	31850											
PTPRC	5788	broad.mit.edu	37	chr1	198665832	198665832	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttctcccattttccattAattaacaggattgactacag	4	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198665832	G	G	198665832	1	3	15	0	1	0	0	0	0	0	0	0	12905	377	13	5		5	PTPRC	1	198665832	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1155556	198665832	50584789	201	31851											
PTPRC	5788	broad.mit.edu	37	chr1	198668730	198668730	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgcctcaccttcccacgcaCgcagactcgcagacgccctc	7	21	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198668730	G	G	198668730	3	3	15	1	0	0	0	0	1	0	0	0	12905	535	19	4	355	4	PTPRC	1	198668730	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2898	198668730	50581891	202	31852											
C1orf106	55765	broad.mit.edu	37	chr1	200869434	200869434	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctcagtaccctggcaGgttcccttccaccctttcac	6	18	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200869434	C	C	200869434	1	2	15	0	1	0	0	0	0	0	0	0	2000	1015	35	4		4	C1orf106	1	200869434	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2200704	200869434	48381187	203	31853											
KIF21B	23046	broad.mit.edu	37	chr1	200969510	200969510	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaggggcggggacgacactCcactcacctcttcctccgct	10	17	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200969510	A	A	200969510	1	1	15	0	1	0	0	0	0	0	0	0	8359	870	30	3		3	KIF21B	1	200969510	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	100076	200969510	48281111	204	31854											
CACNA1S	779	broad.mit.edu	37	chr1	201010574	201010574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctaagaaaagagtggggCttcccggactcctctgggag	13	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201010574	A	A	201010574	1	1	15	0	1	0	0	0	0	0	0	0	2573	812	28	3		3	CACNA1S	1	201010574	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	41064	201010574	48240047	205	31855											
IGFN1	91156	broad.mit.edu	37	chr1	201195085	201195085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcacacgctcctcagcGcacggtccctggcacgaggc	12	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201195085	T	T	201195085	2	4	15	1	0	0	0	0	0	0	0	1	7660	1074	38	3		3	IGFN1	1	201195085	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	184511	201195085	48055536	206	31856											
NAV1	89796	broad.mit.edu	37	chr1	201763728	201763728	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggacatccagccacagattGagagggaacagggagcagga	15	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201763728	C	C	201763728	1	2	15	0	1	0	0	0	0	0	0	0	10277	1305	45	4		4	NAV1	1	201763728	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	568643	201763728	47486893	207	31857											
LGR6	59352	broad.mit.edu	37	chr1	202274743	202274743	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcacagtcctggctagagcCccccgtccccgagcagccct	10	19	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202274743	G	G	202274743	1	3	15	0	1	0	0	0	0	0	0	0	8830	638	22	4		4	LGR6	1	202274743	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	511015	202274743	46975878	208	31858											
LGR6	59352	broad.mit.edu	37	chr1	202275935	202275935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctcccagtgctcggggGgcatggagcggagccagggt	17	12	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202275935	T	T	202275935	1	4	15	0	1	0	0	0	0	0	0	0	8830	1247	43	2		2	LGR6	1	202275935	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1192	202275935	46974686	209	31859											
LGR6	59352	broad.mit.edu	37	chr1	202288240	202288240	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccatggatggagaactgCtgctgagggcagagggatct	15	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202288240	G	G	202288240	3	3	15	1	0	0	0	0	1	0	0	0	8830	796	28	4	3026	4	LGR6	1	202288240	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	12305	202288240	46962381	210	31860											
CYB5R1	51706	broad.mit.edu	37	chr1	202933914	202933914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaaaatatgcctgaggcCagttgagcagctgctatgac	12	8	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202933914	A	A	202933914	1	1	15	0	1	0	0	0	0	0	0	0	4159	609	21	2		2	CYB5R1	1	202933914	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	645674	202933914	46316707	211	31861											
PPFIA4	8497	broad.mit.edu	37	chr1	203008326	203008326	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctccaggatgccatacacGagcgggaccagctccagcgc	13	15	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203008326	T	T	203008326	4	4	15	1	0	0	0	0	0	1	0	0	12408	1073	37	3		3	PPFIA4	1	203008326	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	74412	203008326	46242295	212	31862											
FMOD	2331	broad.mit.edu	37	chr1	203322652	203322652	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccagtcacataggcgaaGggcaggagggttggacatga	16	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203322652	T	T	203322652	1	4	15	0	1	0	0	0	0	0	0	0	6017	1015	35	2		2	FMOD	1	203322652	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	314326	203322652	45927969	213	31863											
PPP1R15B	84919	broad.mit.edu	37	chr1	204379011	204379011	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccagacaaatccttctctGaatcagaaggctcttcagga	8	11	4	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204379011	A	A	204379011	3	1	15	1	0	0	0	0	1	0	0	0	12465	1294	45	4	620	4	PPP1R15B	1	204379011	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1056359	204379011	44871610	214	31864											
PPP1R15B	84919	broad.mit.edu	37	chr1	204379097	204379097	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttataaggatctacactgcaGaaagagttccaaaggtgaag	10	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204379097	C	C	204379097	3	2	15	1	0	0	0	0	1	0	0	0	12465	933	33	4	706	4	PPP1R15B	1	204379097	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	86	204379097	44871524	215	31865											
NFASC	23114	broad.mit.edu	37	chr1	204931404	204931404	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggcccagccagggtgcCaaggtgacacctccagaagg	14	13	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204931404	T	T	204931404	1	4	15	0	1	0	0	0	0	0	0	0	10454	609	21	4		4	NFASC	1	204931404	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	552307	204931404	44319217	216	31866											
NUCKS1	64710	broad.mit.edu	37	chr1	205688745	205688745	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttttctttttcgaacTgccatagtcactatcgtcat	5	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205688745	G	G	205688745	3	3	15	1	0	0	0	0	1	0	0	0	10815	1580	55	5	297	5	NUCKS1	1	205688745	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	757341	205688745	43561876	217	31867											
AVPR1B	553	broad.mit.edu	37	chr1	206224651	206224651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcgctcccgcatgcacCtgttcgtgctgcacttagcc	10	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206224651	A	A	206224651	3	1	15	1	0	0	0	0	1	0	0	0	1237	680	24	2	213	2	AVPR1B	1	206224651	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	535906	206224651	43025970	218	31868											
CD46	4179	broad.mit.edu	37	chr1	207925395	207925395	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgacgcacttccgccccGggcgcggctcgggccacgcc	13	20	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207925395	T	T	207925395	1	4	15	0	1	0	0	0	0	0	0	0	3048	1131	39	1		1	CD46	1	207925395	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	1700744	207925395	41325226	219	31869											
PLXNA2	5362	broad.mit.edu	37	chr1	208213453	208213453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcacagaggggtctccGtggtggggcctgggcttgcc	16	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208213453	T	T	208213453	1	4	15	0	1	0	0	0	0	0	0	0	12215	1160	40	3		3	PLXNA2	1	208213453	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	288058	208213453	41037168	220	31870											
LAMB3	3914	broad.mit.edu	37	chr1	209799050	209799050	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgctctgtgactgcggggCtgctgagaactgctcggatc	14	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209799050	G	G	209799050	3	3	15	1	0	0	0	0	1	0	0	0	8684	797	28	4	1639	4	LAMB3	1	209799050	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1585597	209799050	39451571	221	31871											
KCNH1	3756	broad.mit.edu	37	chr1	211192227	211192227	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatccacgttctcaaaagcGttgatgacatcatatggcaa	7	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211192227	A	A	211192227	2	1	15	1	0	0	0	0	0	0	0	1	8101	1136	40	4		4	KCNH1	1	211192227	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1393177	211192227	38058394	222	31872											
RD3	343035	broad.mit.edu	37	chr1	211654573	211654573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggggtgtgctggccagcCagctgtagtccacaccggtg	15	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211654573	A	A	211654573	3	1	15	1	0	0	0	0	1	0	0	0	13295	595	21	2	410	2	RD3	1	211654573	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	462346	211654573	37596048	223	31873											
USH2A	7399	broad.mit.edu	37	chr1	215953232	215953232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtcagtgtggatgagaCctttcccaacctgcctgatc	11	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215953232	A	A	215953232	3	1	15	1	0	0	0	0	1	0	0	0	17162	507	18	3	4788	3	USH2A	1	215953232	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4298659	215953232	33297389	224	31874											
USH2A	7399	broad.mit.edu	37	chr1	216040371	216040371	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtttagcccacctcacgtcGatggctgtgtggttaaggac	13	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216040371	A	A	216040371	2	1	15	1	0	0	0	0	0	0	0	1	17162	1048	37	4		4	USH2A	1	216040371	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	87139	216040371	33210250	225	31875											
USH2A	7399	broad.mit.edu	37	chr1	216363521	216363521	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatattataagttttttttCttgataggcaacagattttt	6	3	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216363521	T	T	216363521	1	4	15	0	1	0	0	0	0	0	0	0	17162	928	32	4		4	USH2A	1	216363521	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	323150	216363521	32887100	226	31876											
USH2A	7399	broad.mit.edu	37	chr1	216420110	216420110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgattacagcgaagacCtgttacccctaatttgcaag	7	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216420110	A	A	216420110	3	1	15	1	0	0	0	0	1	0	0	0	17162	681	24	2	13236	2	USH2A	1	216420110	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	56589	216420110	32830511	227	31877											
USH2A	7399	broad.mit.edu	37	chr1	216420664	216420664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgcagatgatacgaacaCaaaatattgagtgttttctc	7	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216420664	A	A	216420664	1	1	15	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	216420664	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	554	216420664	32829957	228	31878											
SPATA17	128153	broad.mit.edu	37	chr1	217822201	217822201	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattagttactaatgaagtGctttttaaacattttgtttt	5	3	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217822201	T	T	217822201	1	4	15	0	1	0	0	0	0	0	0	0	15118	1334	46	3		3	SPATA17	1	217822201	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1401537	217822201	31428420	229	31879											
HLX	3142	broad.mit.edu	37	chr1	221054757	221054757	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctaacgggcgagccgaCtaacagtcagaaatctcagg	11	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	221054757	G	G	221054757	1	3	15	0	1	0	0	0	0	0	0	0	7283	580	20	4		4	HLX	1	221054757	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3232556	221054757	28195864	230	31880											
PSEN2	5664	broad.mit.edu	37	chr1	227073439	227073439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctgccccacaccatggcGgcagggcccgtgaaacagcc	12	17	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227073439	T	T	227073439	1	4	15	0	1	0	0	0	0	0	0	0	12757	1131	39	1		1	PSEN2	1	227073439	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6018682	227073439	22177182	231	31881											
CDC42BPA	8476	broad.mit.edu	37	chr1	227348290	227348290	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaccaaaatctgctaacCgaatatgtccattcatatcc	4	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227348290	G	G	227348290	3	3	15	1	0	0	0	0	1	0	0	0	3102	652	23	4	4636	4	CDC42BPA	1	227348290	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	274851	227348290	21902331	232	31882											
WNT9A	7483	broad.mit.edu	37	chr1	228109636	228109636	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaactgccgccagcaggtCcgcaccgtgcatgagcctga	12	16	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228109636	A	A	228109636	2	1	15	1	0	0	0	0	0	0	0	1	17525	842	30	3		3	WNT9A	1	228109636	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	761346	228109636	21140985	233	31883											
WNT3A	89780	broad.mit.edu	37	chr1	228238282	228238282	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttataacaatgcaaatgggCtaagacccctgacctgccca	7	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228238282	G	G	228238282	1	3	15	0	1	0	0	0	0	0	0	0	17516	812	28	4		4	WNT3A	1	228238282	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	128646	228238282	21012339	234	31884											
OBSCN	84033	broad.mit.edu	37	chr1	228466354	228466354	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgggagcctggagcaccaTctctgatccaccccatgccc	9	18	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228466354	C	C	228466354	1	2	15	0	1	0	0	0	0	0	0	0	10907	1450	50	5		5	OBSCN	1	228466354	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	228072	228466354	20784267	235	31885											
OBSCN	84033	broad.mit.edu	37	chr1	228481254	228481254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccgcggcctcgtggcagagGacgctggggagtacctgtgc	17	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228481254	T	T	228481254	3	4	15	1	0	0	0	0	1	0	0	0	10907	1174	41	3	11226	3	OBSCN	1	228481254	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	14900	228481254	20769367	236	31886											
TRIM11	81559	broad.mit.edu	37	chr1	228589724	228589724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctatacaggaccttcacCccctaccctgccacccagga	5	20	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228589724	A	A	228589724	1	1	15	0	1	0	0	0	0	0	0	0	16611	638	22	2		2	TRIM11	1	228589724	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	108470	228589724	20660897	237	31887											
ABCB10	23456	broad.mit.edu	37	chr1	229657241	229657241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaacaaaaaaCaggaaaaggaagaagacaaa	6	3	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229657241	A	A	229657241	1	1	15	0	1	0	0	0	0	0	0	0	41	493	17	3		3	ABCB10	1	229657241	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1067517	229657241	19593380	238	31888											
GALNT2	2590	broad.mit.edu	37	chr1	230415090	230415090	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccaagctgaggcacgtGggcagcaacctgtgcctgga	13	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230415090	T	T	230415090	2	4	15	1	0	0	0	0	0	0	0	1	6275	1335	47	2		2	GALNT2	1	230415090	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	757849	230415090	18835531	239	31889											
TRIM67	440730	broad.mit.edu	37	chr1	231344888	231344888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgccttcggggtggccaGggccagcgtggtcaaggaca	16	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231344888	T	T	231344888	3	4	15	1	0	0	0	0	1	0	0	0	16665	1000	35	2	2045	2	TRIM67	1	231344888	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	929798	231344888	17905733	240	31890											
PCNXL2	80003	broad.mit.edu	37	chr1	233296137	233296138	+	Missense_Mutation	DNP	CC	AA	AA													cacgtaatgtgttacaaaccCcacggctccagccaaggcaa							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	233296138	AA	AA	233296137	3	1	15	1	0	0	0	0	1	0	0	0	11686	623	22	2	3068	2	PCNXL2	1	233296137	Missense_Mutation	DNP	CC	TCGA-05-4410-01A-21D-1855-08	1951249	233296137	15954484	241	31891											
C1orf31	388753	broad.mit.edu	37	chr1	234510050	234510050	+	Frame_Shift_Del	DEL	G	-	-													gggggcccgggatgagtactGgaagtgtttagatgagaact							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	234510050	-	-	234510050	7	5	15	1	0	1	0	1	0	0	0	0	2059	1357	47	0	203	0	C1orf31	1	234510050	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	1213913	234510050	14740571	242	31892											
GNG4	2786	broad.mit.edu	37	chr1	235779454	235779454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccgcctgctgctatgtgGgtctggcctttggcatcctg	12	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235779454	T	T	235779454	1	4	15	0	1	0	0	0	0	0	0	0	6593	1247	43	2		2	GNG4	1	235779454	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1269404	235779454	13471167	243	31893											
LYST	1130	broad.mit.edu	37	chr1	235945360	235945360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacttgtttttcttggaagCataaaatccaaagtaacatc	5	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235945360	A	A	235945360	3	1	15	1	0	0	0	0	1	0	0	0	9216	710	25	3	6671	3	LYST	1	235945360	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	165906	235945360	13305261	244	31894											
NID1	4811	broad.mit.edu	37	chr1	236205613	236205613	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaggaggaaggacaggcttCttagaaacaggccagcaacc	12	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236205613	G	G	236205613	1	3	15	0	1	0	0	0	0	0	0	0	10509	928	32	4		4	NID1	1	236205613	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	260253	236205613	13045008	245	31895											
ACTN2	88	broad.mit.edu	37	chr1	236883600	236883600	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcacttacatgattgaatgAgagacatgtaagtgggttct	11	5	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236883600	T	T	236883600	1	4	15	0	1	0	0	0	0	0	0	0	205	319	11	5		5	ACTN2	1	236883600	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	677987	236883600	12367021	246	31896											
RYR2	6262	broad.mit.edu	37	chr1	237550647	237550647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagactctctggagcgtgGccccaatcagctcaggaagt	12	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237550647	T	T	237550647	3	4	15	1	0	0	0	0	1	0	0	0	13880	1203	42	3	677	3	RYR2	1	237550647	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	667047	237550647	11699974	247	31897											
RYR2	6262	broad.mit.edu	37	chr1	237660118	237660118	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgggcatttctgaaagctAttggtgctgcttccattagg	12	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237660118	C	C	237660118	1	2	15	0	1	0	0	0	0	0	0	0	13880	464	16	5		5	RYR2	1	237660118	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	109471	237660118	11590503	248	31898											
RYR2	6262	broad.mit.edu	37	chr1	237663982	237663982	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgagataaaaaaatacatGaccttccttaatgttttccc	4	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237663982	A	A	237663982	1	1	15	0	1	0	0	0	0	0	0	0	13880	1305	45	4		4	RYR2	1	237663982	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3864	237663982	11586639	249	31899											
RYR2	6262	broad.mit.edu	37	chr1	237732489	237732489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacactatgggcgctcttgGcaagcaggcgatgtcgtggg	16	9	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237732489	T	T	237732489	3	4	15	1	0	0	0	0	1	0	0	0	13880	1212	42	3	3582	3	RYR2	1	237732489	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	68507	237732489	11518132	250	31900											
RYR2	6262	broad.mit.edu	37	chr1	237758850	237758850	+	Frame_Shift_Del	DEL	G	-	-													cgggtgagagcatgagccccGggcaaggacgcaacaataat							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	237758850	-	-	237758850	7	5	15	1	0	1	0	1	0	0	0	0	13880	1116	39	0	4623	0	RYR2	1	237758850	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	26361	237758850	11491771	251	31901											
RYR2	6262	broad.mit.edu	37	chr1	237777418	237777418	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctccggctctactcagccGtctgtgctcttgggaaccac	9	16	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237777418	C	C	237777418	3	2	15	1	0	0	0	0	1	0	0	0	13880	1145	40	4	5136	4	RYR2	1	237777418	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	18568	237777418	11473203	252	31902											
RYR2	6262	broad.mit.edu	37	chr1	237780850	237780850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcattcaggatctctgcCttgcaaaattatataactca	5	9	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237780850	A	A	237780850	1	1	15	0	1	0	0	0	0	0	0	0	13880	696	24	2		2	RYR2	1	237780850	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3432	237780850	11469771	253	31903											
RYR2	6262	broad.mit.edu	37	chr1	237906994	237906994	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgacatttacctttgttaGacccaacatcttggattctt	6	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237906994	T	T	237906994	1	4	15	0	1	0	0	0	0	0	0	0	13880	957	33	3		3	RYR2	1	237906994	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	126144	237906994	11343627	254	31904											
RYR2	6262	broad.mit.edu	37	chr1	237944872	237944872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatattttcaggattccaGtcaaattgagctattaaaag	6	6	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237944872	T	T	237944872	3	4	15	1	0	0	0	0	1	0	0	0	13880	1029	36	3	12242	3	RYR2	1	237944872	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	37878	237944872	11305749	255	31905											
RYR2	6262	broad.mit.edu	37	chr1	237947327	237947327	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccgtccttctgacaaacctCtctgagcacatgcccaacga	7	16	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237947327	A	A	237947327	2	1	15	1	0	0	0	0	0	0	0	1	13880	900	32	3		3	RYR2	1	237947327	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2455	237947327	11303294	256	31906											
FMN2	56776	broad.mit.edu	37	chr1	240334511	240334511	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttgatgaatttgtgactCacaatctgtcttttgatgaa	8	5	3	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240334511	T	T	240334511	1	4	15	0	1	0	0	0	0	0	0	0	6008	841	29	4		4	FMN2	1	240334511	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2387184	240334511	8916110	257	31907											
FMN2	56776	broad.mit.edu	37	chr1	240494014	240494014	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcagatggctttggattaGacattcttccaaaactgaaa	9	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240494014	A	A	240494014	3	1	15	1	0	0	0	0	1	0	0	0	6008	942	33	4	4591	4	FMN2	1	240494014	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	159503	240494014	8756607	258	31908											
RGS7	6000	broad.mit.edu	37	chr1	240933341	240933341	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttacgctggtaagctctgcAatatttcccagggagtttca	10	9	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240933341	T	T	240933341	1	4	15	0	1	0	0	0	0	0	0	0	13419	145	5	5		5	RGS7	1	240933341	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	439327	240933341	8317280	259	31909											
RGS7	6000	broad.mit.edu	37	chr1	241093897	241093897	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaattcaatgttaaaaataTtggtcccatcctgagaactg	6	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241093897	C	C	241093897	1	2	15	0	1	0	0	0	0	0	0	0	13419	1508	52	5		5	RGS7	1	241093897	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	160556	241093897	8156724	260	31910											
CHML	1122	broad.mit.edu	37	chr1	241798993	241798993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccacttcttgaacatgCagctgcaaggatggattcgg	11	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241798993	A	A	241798993	3	1	15	1	0	0	0	0	1	0	0	0	3382	710	25	3	1898	3	CHML	1	241798993	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	705096	241798993	7451628	261	31911											
PLD5	200150	broad.mit.edu	37	chr1	242451549	242451549	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatgtacatgtactctgGgtgtgtgtagactaaaataa	9	4	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242451549	T	T	242451549	1	4	15	0	1	0	0	0	0	0	0	0	12144	1247	43	2		2	PLD5	1	242451549	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	652556	242451549	6799072	262	31912											
ZNF238	10472	broad.mit.edu	37	chr1	244217028	244217028	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattaatttttttatatggGgactggagcgctgaaaagtt	11	3	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244217028	T	T	244217028	1	4	15	0	1	0	0	0	0	0	0	0	17916	1247	43	2		2	ZNF238	1	244217028	5'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	1765479	244217028	5033593	263	31913											
C1orf101	257044	broad.mit.edu	37	chr1	244653795	244653795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatattttttaaattttGtatagccttcatatatcact	2	5	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244653795	T	T	244653795	1	4	15	0	1	0	0	0	0	0	0	0	1996	1392	48	3		3	C1orf101	1	244653795	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	436767	244653795	4596826	264	31914											
CNST	163882	broad.mit.edu	37	chr1	246805168	246805168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgaggaaacctttccCaagttattttcagcttccta	6	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246805168	A	A	246805168	1	1	15	0	1	0	0	0	0	0	0	0	3666	609	21	2		2	CNST	1	246805168	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2151373	246805168	2445453	265	31915											
NLRP3	114548	broad.mit.edu	37	chr1	247587718	247587718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcactgactggcagaagGccgagcggggagacattctc	14	11	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247587718	A	A	247587718	3	1	15	1	0	0	0	0	1	0	0	0	10573	1203	42	4	983	4	NLRP3	1	247587718	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	782550	247587718	1662903	266	31916											
NLRP3	114548	broad.mit.edu	37	chr1	247587916	247587916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacttctctgatgaggccCaagccagggcagccttcagt	11	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247587916	A	A	247587916	3	1	15	1	0	0	0	0	1	0	0	0	10573	595	21	2	1181	2	NLRP3	1	247587916	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	198	247587916	1662705	267	31917											
OR14A16	284532	broad.mit.edu	37	chr1	247978156	247978156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagagccacctttatggcCttgtttctcaaactgtatat	6	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978156	A	A	247978156	3	1	15	1	0	0	0	0	1	0	0	0	11039	680	24	2	57	2	OR14A16	1	247978156	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	390240	247978156	1272465	268	31918											
OR14A16	284532	broad.mit.edu	37	chr1	247978337	247978337	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatagagtaggcttttgacTggccttctgtggaagggatc	13	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978337	A	A	247978337	3	1	15	1	0	0	0	0	1	0	0	0	11039	1580	55	5	238	5	OR14A16	1	247978337	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	181	247978337	1272284	269	31919											
OR2L13	284521	broad.mit.edu	37	chr1	248099960	248099960	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccggttctcgtgcagaaatCtaagggtgtggcagagctgg	16	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248099960	A	A	248099960	1	1	15	0	1	0	0	0	0	0	0	0	11100	928	32	3		3	OR2L13	1	248099960	5'Flank	SNP	C	TCGA-05-4410-01A-21D-1855-08	121623	248099960	1150661	270	31920											
OR2AK2	391191	broad.mit.edu	37	chr1	248128744	248128744	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtcttttccaatatggctgGataaactctcttctctttgt	7	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248128744	C	C	248128744	3	2	15	1	0	0	0	0	1	0	0	0	11080	1183	41	4	113	4	OR2AK2	1	248128744	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	28784	248128744	1121877	271	31921											
OR2L13	284521	broad.mit.edu	37	chr1	248185723	248185723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatcaactcttgtgctcaCacagtatatgcattccgtat	5	12	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248185723	A	A	248185723	1	1	15	0	1	0	0	0	0	0	0	0	11100	493	17	3		3	OR2L13	1	248185723	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	56979	248185723	1064898	272	31922											
OR2L13	284521	broad.mit.edu	37	chr1	248186062	248186062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatctctgacagaggacaaGgttctggctgttttctacac	10	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248186062	T	T	248186062	1	4	15	0	1	0	0	0	0	0	0	0	11100	1015	35	2		2	OR2L13	1	248186062	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	339	248186062	1064559	273	31923											
OR2M2	391194	broad.mit.edu	37	chr1	248344254	248344254	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaactttatgttttgctgTttgctaaattcttctttcta	4	6	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248344254	C	C	248344254	3	2	15	1	0	0	0	0	1	0	0	0	11104	1725	60	5	969	5	OR2M2	1	248344254	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	158192	248344254	906367	274	31924											
OR2M7	391196	broad.mit.edu	37	chr1	248487667	248487667	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagatgagcatgaggtccatGagggacagttggctgaggag	17	6	0	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248487667	C	C	248487667	2	2	15	1	0	0	0	0	0	0	0	1	11108	1277	45	4		4	OR2M7	1	248487667	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	143413	248487667	762954	275	31925											
OR2T4	127074	broad.mit.edu	37	chr1	248525501	248525501	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccgtggatcccgggagattCatcatttcttctgtgaagtt	10	9	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248525501	T	T	248525501	3	4	15	1	0	0	0	0	1	0	0	0	11121	826	29	4	621	4	OR2T4	1	248525501	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	37834	248525501	725120	276	31926											
OR2T4	127074	broad.mit.edu	37	chr1	248525656	248525656	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcctcctcaccatccaCgggatgaactcagcagaggg	9	15	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248525656	G	G	248525656	3	3	15	1	0	0	0	0	1	0	0	0	11121	535	19	4	776	4	OR2T4	1	248525656	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	155	248525656	724965	277	31927											
OR2T6	254879	broad.mit.edu	37	chr1	248551682	248551682	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatggggctgccttgtataCgtatacgcttccccaatctt	8	12	1	0	rs141134612	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248551682	T	T	248551682	3	4	15	1	0	0	0	0	1	0	0	0	11123	536	19	4	775	4	OR2T6	1	248551682	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	26026	248551682	698939	278	31928											
TPO	7173	broad.mit.edu	37	chr2	1459997	1459997	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcaaagctgccttcggGggaggggctgactgccagat	15	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1459997	T	T	1459997	2	4	15	1	0	0	0	0	0	0	0	1	16534	1219	43	2		2	TPO	2	1459997	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08		1459997	241739376	279	31929											
TSSC1	7260	broad.mit.edu	37	chr2	3341795	3341795	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccgcacttacttctgttGtagcaggtcgtcagcacacc	9	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3341795	A	A	3341795	2	1	15	1	0	0	0	0	0	0	0	1	16791	1372	48	4		4	TSSC1	2	3341795	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1881798	3341795	239857578	280	31930											
ADI1	55256	broad.mit.edu	37	chr2	3504654	3504654	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtctcccttctccatgaaGatccggatccactggtcctc	7	15	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3504654	A	A	3504654	2	1	15	1	0	0	0	0	0	0	0	1	315	932	33	4		4	ADI1	2	3504654	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	162859	3504654	239694719	281	31931											
RNF144A	9781	broad.mit.edu	37	chr2	7164389	7164389	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttgttttttcatttaatAccaagaaaactcagtctgtg	6	6	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7164389	G	G	7164389	1	3	15	0	1	0	0	0	0	0	0	0	13556	406	14	5		5	RNF144A	2	7164389	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	3659735	7164389	236034984	282	31932											
NOL10	79954	broad.mit.edu	37	chr2	10729817	10729817	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcactctcttcatctacttGgaagtcagggttctcaaaca	6	11	6	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10729817	A	A	10729817	4	1	15	1	0	0	0	0	0	1	0	0	10615	1357	47	4	599	4	NOL10	2	10729817	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3565428	10729817	232469556	283	31933											
NBAS	51594	broad.mit.edu	37	chr2	15615813	15615813	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacaggaaaaagccttacctCcaaacttaaaaatcccccat	3	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15615813	A	A	15615813	4	1	15	1	0	0	0	0	0	1	0	0	10280	864	30	3	5932	3	NBAS	2	15615813	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4885996	15615813	227583560	284	31934											
FAM49A	81553	broad.mit.edu	37	chr2	16745340	16745340	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctttttcttgaagctgaAtgtcattgggattttgaatt	9	4	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16745340	G	G	16745340	3	3	15	1	0	0	0	0	1	0	0	0	5626	101	4	5	788	5	FAM49A	2	16745340	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1129527	16745340	226454033	285	31935											
APOB	338	broad.mit.edu	37	chr2	21246498	21246498	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagtggggagttcaaaggCattctccatgaagatgtagt	12	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21246498	G	G	21246498	3	3	15	1	0	0	0	0	1	0	0	0	787	710	25	4	11240	4	APOB	2	21246498	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4501158	21246498	221952875	286	31936											
UBXN2A	165324	broad.mit.edu	37	chr2	24205850	24205850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaatgaaatatgtttGtctacgaagcctgtgttcca	8	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24205850	T	T	24205850	3	4	15	1	0	0	0	0	1	0	0	0	17040	1368	48	3	386	3	UBXN2A	2	24205850	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2959352	24205850	218993523	287	31937											
ITSN2	50618	broad.mit.edu	37	chr2	24439093	24439093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccggtcttcttccgcaccCgcaaagccctgccaagaaca	7	19	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24439093	A	A	24439093	3	1	15	1	0	0	0	0	1	0	0	0	7997	652	23	1	1314	1	ITSN2	2	24439093	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	233243	24439093	218760280	288	31938											
PPM1G	5496	broad.mit.edu	37	chr2	27607565	27607565	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcctcttcttcctccGcctcatctgactcatcctca	3	18	7	1	rs150808424		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27607565	A	A	27607565	3	1	15	1	0	0	0	0	1	0	0	0	12441	1087	38	4	864	4	PPM1G	2	27607565	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3168472	27607565	215591808	289	31939											
IFT172	26160	broad.mit.edu	37	chr2	27677166	27677166	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtcaagataatcatgaaaGatcctgggacggtgactggg	14	6	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27677166	C	C	27677166	1	2	15	0	1	0	0	0	0	0	0	0	7627	957	33	4		4	IFT172	2	27677166	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	69601	27677166	215522207	290	31940											
FNDC4	64838	broad.mit.edu	37	chr2	27715496	27715496	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggctgcccctcaggggcaGaatcaccctttccgccctca	9	18	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27715496	C	C	27715496	1	2	15	0	1	0	0	0	0	0	0	0	6029	957	33	4		4	FNDC4	2	27715496	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	38330	27715496	215483877	291	31941											
GPN1	11321	broad.mit.edu	37	chr2	27857779	27857779	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagcttctgggacaattatCactgaagcccttgtgagtat	9	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27857779	A	A	27857779	2	1	15	1	0	0	0	0	0	0	0	1	6682	816	29	3		3	GPN1	2	27857779	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	142283	27857779	215341594	292	31942											
CLIP4	79745	broad.mit.edu	37	chr2	29366550	29366550	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctaagtaagagttgaacAtttttctcttatctttattt	5	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29366550	G	G	29366550	1	3	15	0	1	0	0	0	0	0	0	0	3567	232	8	5		5	CLIP4	2	29366550	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1508771	29366550	213832823	293	31943											
ALK	238	broad.mit.edu	37	chr2	29446262	29446262	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtcactgatggaggagGtcttgccagcaaagcagtag	14	8	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29446262	A	A	29446262	3	1	15	1	0	0	0	0	1	0	0	0	525	1261	44	4	1597	4	ALK	2	29446262	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	79712	29446262	213753111	294	31944											
ALK	238	broad.mit.edu	37	chr2	29519836	29519836	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgacatgccagaccatccTgccttgctccttcccggttt	9	16	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29519836	G	G	29519836	2	3	15	1	0	0	0	0	0	0	0	1	525	1579	55	5		5	ALK	2	29519836	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	73574	29519836	213679537	295	31945											
LBH	81606	broad.mit.edu	37	chr2	30457385	30457385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctaccaggtgagtaagtcCtggctcccctctgactctct	8	15	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30457385	A	A	30457385	1	1	15	0	1	0	0	0	0	0	0	0	8722	696	24	2		2	LBH	2	30457385	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	937549	30457385	212741988	296	31946											
LTBP1	4052	broad.mit.edu	37	chr2	33567972	33567972	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacaatacagctggctcCttccgctgcctctgttatca	8	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33567972	A	A	33567972	2	1	15	1	0	0	0	0	0	0	0	1	9160	668	24	2		2	LTBP1	2	33567972	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3110587	33567972	209631401	297	31947											
C2orf56	55471	broad.mit.edu	37	chr2	37459132	37459132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaagcacagtagcccgcGgtctgcggtggggcgaggtt	17	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37459132	T	T	37459132	1	4	15	0	1	0	0	0	0	0	0	0	2199	1131	39	1		1	C2orf56	2	37459132	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3891160	37459132	205740241	298	31948											
SOS1	6654	broad.mit.edu	37	chr2	39239411	39239411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaaatgtaatattatgaCctggtccattgtctcttgca	7	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39239411	A	A	39239411	3	1	15	1	0	0	0	0	1	0	0	0	15050	507	18	3	1795	3	SOS1	2	39239411	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1780279	39239411	203959962	299	31949											
SLC8A1	6546	broad.mit.edu	37	chr2	40655707	40655707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgatggttttatatggaaCgataacatttcctcgagctc	8	8	0	0	rs151189284		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40655707	A	A	40655707	3	1	15	1	0	0	0	0	1	0	0	0	14820	536	19	3	1355	3	SLC8A1	2	40655707	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1416296	40655707	202543666	300	31950											
SLC8A1	6546	broad.mit.edu	37	chr2	40656124	40656124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgttagtcaaatcaccacCtctgcggataatggtaaggg	11	8	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656124	A	A	40656124	3	1	15	1	0	0	0	0	1	0	0	0	14820	681	24	2	1772	2	SLC8A1	2	40656124	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	417	40656124	202543249	301	31951											
PLEKHH2	130271	broad.mit.edu	37	chr2	43970132	43970132	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatagggaacagagacttctCtgcttacttttgtcagcacc	8	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43970132	A	A	43970132	1	1	15	0	1	0	0	0	0	0	0	0	12172	928	32	3		3	PLEKHH2	2	43970132	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3314008	43970132	199229241	302	31952											
MSH2	4436	broad.mit.edu	37	chr2	47693793	47693793	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcttttcttcttgattatCaaggcttggaccctggcaaa	7	9	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47693793	G	G	47693793	1	3	15	0	1	0	0	0	0	0	0	0	9964	841	29	4		4	MSH2	2	47693793	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3723661	47693793	195505580	303	31953											
LHCGR	3973	broad.mit.edu	37	chr2	48925784	48925784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtttctaaaagcacagCagtggctggggtaagtcaac	12	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48925784	A	A	48925784	3	1	15	1	0	0	0	0	1	0	0	0	8834	710	25	3	1275	3	LHCGR	2	48925784	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1231991	48925784	194273589	304	31954											
NRXN1	9378	broad.mit.edu	37	chr2	50463973	50463973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcctgaagaactgtccactCgcaccaatacggcttctttc	7	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50463973	A	A	50463973	3	1	15	1	0	0	0	0	1	0	0	0	10760	884	31	3	1047	3	NRXN1	2	50463973	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1538189	50463973	192735400	305	31955											
PSME4	23198	broad.mit.edu	37	chr2	54115801	54115801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accattcatttccatttataCataagttaacacaaaacctt	1	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54115801	A	A	54115801	1	1	15	0	1	0	0	0	0	0	0	0	12815	493	17	3		3	PSME4	2	54115801	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3651828	54115801	189083572	306	31956											
PAPOLG	64895	broad.mit.edu	37	chr2	61010339	61010339	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacagaagaaaaccatctAgagtggtaagacttctattt	7	7	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61010339	G	G	61010339	2	3	15	1	0	0	0	0	0	0	0	1	11525	407	15	5		5	PAPOLG	2	61010339	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	6894538	61010339	182189034	307	31957											
USP34	9736	broad.mit.edu	37	chr2	61605508	61605508	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctacttacgtttctgtgtCcgatactaatgattcattat	5	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61605508	G	G	61605508	3	3	15	1	0	0	0	0	1	0	0	0	17192	855	30	4	9866	4	USP34	2	61605508	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	595169	61605508	181593865	308	31958											
USP34	9736	broad.mit.edu	37	chr2	61632827	61632827	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtattacttaaaattcacacCacctattttacatacctcaa	1	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61632827	T	T	61632827	1	4	15	0	1	0	0	0	0	0	0	0	17192	609	21	4		4	USP34	2	61632827	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	27319	61632827	181566546	309	31959											
FAM161A	84140	broad.mit.edu	37	chr2	62066780	62066780	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagatcaaatggtttacaCactgttaagagttttggaga	10	4	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62066780	A	A	62066780	2	1	15	1	0	0	0	0	0	0	0	1	5518	465	17	3		3	FAM161A	2	62066780	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	433953	62066780	181132593	310	31960											
CCT4	10575	broad.mit.edu	37	chr2	62100262	62100262	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattgtctggaaaaaacagtCaaatccacaaattaagacat	5	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62100262	A	A	62100262	1	1	15	0	1	0	0	0	0	0	0	0	2985	841	29	3		3	CCT4	2	62100262	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	33482	62100262	181099111	311	31961											
OTX1	5013	broad.mit.edu	37	chr2	63283359	63283359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacaaggagcctggcgccGctgctgcttcctccgcctgg	12	15	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63283359	T	T	63283359	3	4	15	1	0	0	0	0	1	0	0	0	11414	1087	38	3	983	3	OTX1	2	63283359	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1183097	63283359	179916014	312	31962											
BMP10	27302	broad.mit.edu	37	chr2	69093692	69093692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccattaaaactgaccggctGggaaaacagatctgaaaaaa	8	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69093692	T	T	69093692	3	4	15	1	0	0	0	0	1	0	0	0	1463	1357	47	2	932	2	BMP10	2	69093692	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5810333	69093692	174105681	313	31963											
ANTXR1	84168	broad.mit.edu	37	chr2	69318114	69318114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattttgagttcaagtcacGtatgtacttcattgttggtg	9	5	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69318114	T	T	69318114	1	4	15	0	1	0	0	0	0	0	0	0	711	1160	40	3		3	ANTXR1	2	69318114	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	224422	69318114	173881259	314	31964											
ADD2	119	broad.mit.edu	37	chr2	70922830	70922830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttcaataaggagtgggCagtgatgctggactgtactc	12	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70922830	A	A	70922830	1	1	15	0	1	0	0	0	0	0	0	0	305	725	25	3		3	ADD2	2	70922830	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1604716	70922830	172276543	315	31965											
DYSF	8291	broad.mit.edu	37	chr2	71744159	71744159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacagatgctctcctcgGggagttccgggtaattgctt	13	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71744159	T	T	71744159	3	4	15	1	0	0	0	0	1	0	0	0	4899	1232	43	2	1122	2	DYSF	2	71744159	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	821329	71744159	171455214	316	31966											
WDR54	84058	broad.mit.edu	37	chr2	74652057	74652057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttgctgtgtgtctggcGgtcagggccagaattcacat	14	9	3	1	rs144082439		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74652057	T	T	74652057	3	4	15	1	0	0	0	0	1	0	0	0	17433	1116	39	1	612	1	WDR54	2	74652057	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2907898	74652057	168547316	317	31967											
TTC31	64427	broad.mit.edu	37	chr2	74720290	74720290	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcaagccccaggacccttCaaagggctgggacatcctgg	11	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74720290	T	T	74720290	3	4	15	1	0	0	0	0	1	0	0	0	16826	838	29	4	1555	4	TTC31	2	74720290	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	68233	74720290	168479083	318	31968											
DQX1	165545	broad.mit.edu	37	chr2	74747218	74747218	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaatgggaagggatagTagtacaggtagaatgctgaa	16	2	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74747218	A	A	74747218	1	1	15	0	1	0	0	0	0	0	0	0	4791	1653	57	5		5	DQX1	2	74747218	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	26928	74747218	168452155	319	31969											
SEMA4F	10505	broad.mit.edu	37	chr2	74901548	74901548	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccctgaagtcagggaggAaacttaaattggtctccatg	11	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74901548	G	G	74901548	1	3	15	0	1	0	0	0	0	0	0	0	14148	261	9	5		5	SEMA4F	2	74901548	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	154330	74901548	168297825	320	31970											
LRRTM4	80059	broad.mit.edu	37	chr2	77745707	77745707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgagagaaagagagccaCactcccggcaataattttgt	9	10	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745707	A	A	77745707	3	1	15	1	0	0	0	0	1	0	0	0	9129	478	17	3	498	3	LRRTM4	2	77745707	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2844159	77745707	165453666	321	31971											
REG3A	5068	broad.mit.edu	37	chr2	79386508	79386508	+	Frame_Shift_Del	DEL	G	-	-													agcagcatccaagatacactGggcagggccatgggaggcag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79386508	-	-	79386508	7	5	15	1	0	1	0	1	0	0	0	0	13320	1335	47	0	523	0	REG3A	2	79386508	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	1640801	79386508	163812865	322	31972											
LRRTM1	347730	broad.mit.edu	37	chr2	80530201	80530201	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccagtccagcgagctgacCacaatggccaccttgttcct	8	16	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80530201	G	G	80530201	2	3	15	1	0	0	0	0	0	0	0	1	9126	581	21	4		4	LRRTM1	2	80530201	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1143693	80530201	162669172	323	31973											
CTNNA2	1496	broad.mit.edu	37	chr2	80646707	80646707	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcccaagttttccgtgagcAtgccaacaaactggtagagg	11	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80646707	C	C	80646707	3	2	15	1	0	0	0	0	1	0	0	0	4047	217	8	5	1093	5	CTNNA2	2	80646707	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	116506	80646707	162552666	324	31974											
CTNNA2	1496	broad.mit.edu	37	chr2	80773070	80773070	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acactggctgcccggccacaGagcaaagttgctcaggataa	11	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80773070	T	T	80773070	3	4	15	1	0	0	0	0	1	0	0	0	4047	933	33	3	1252	3	CTNNA2	2	80773070	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	126363	80773070	162426303	325	31975											
CTNNA2	1496	broad.mit.edu	37	chr2	80835441	80835441	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggagagctcattgtgtcaGgggtaagctggacttgggct	17	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80835441	C	C	80835441	3	2	15	1	0	0	0	0	1	0	0	0	4047	1000	35	4	2282	4	CTNNA2	2	80835441	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	62371	80835441	162363932	326	31976											
CTNNA2	1496	broad.mit.edu	37	chr2	80874769	80874769	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgatgaatgctgttgtcctCacggtgaaagcatcctatgt	10	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80874769	A	A	80874769	2	1	15	1	0	0	0	0	0	0	0	1	4047	813	29	3		3	CTNNA2	2	80874769	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	39328	80874769	162324604	327	31977											
TGOLN2	10618	broad.mit.edu	37	chr2	85554096	85554096	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccgggaaggctgctctggAaccaccttgttagggctgtc	13	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85554096	C	C	85554096	2	2	15	1	0	0	0	0	0	0	0	1	15959	233	9	5		5	TGOLN2	2	85554096	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	4679327	85554096	157645277	328	31978											
USP39	10713	broad.mit.edu	37	chr2	85868249	85868249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttccctattacgtaagtaAcatcctgcctcacttctctc	3	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85868249	T	T	85868249	1	4	15	0	1	0	0	0	0	0	0	0	17197	58	2	5		5	USP39	2	85868249	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	314153	85868249	157331124	329	31979											
RGPD1	400966	broad.mit.edu	37	chr2	88056426	88056426	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcatcacctgtcaaaaatGgagttccacttctccccgca	7	14	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88056426	T	T	88056426	1	4	15	0	1	0	0	0	0	0	0	0	13393	1363	47	2		2	RGPD1	2	88056426	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	2188177	88056426	155142947	330	31980											
SMYD1	150572	broad.mit.edu	37	chr2	88390656	88390656	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtactgtcatatttaacaaTggcaagtgagtatgtcttta	8	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88390656	C	C	88390656	2	2	15	1	0	0	0	0	0	0	0	1	14935	1461	51	5		5	SMYD1	2	88390656	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	334230	88390656	154808717	331	31981											
SMYD1	150572	broad.mit.edu	37	chr2	88409967	88409967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgccctgaacaaccagcCcatgcaggtcatggccgagc	12	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88409967	A	A	88409967	3	1	15	1	0	0	0	0	1	0	0	0	14935	623	22	2	1447	2	SMYD1	2	88409967	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	19311	88409967	154789406	332	31982											
C2orf51	200523	broad.mit.edu	37	chr2	88828655	88828655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctaacagatgggtaccCtgctttcaaaagaccccaca	7	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88828655	A	A	88828655	3	1	15	1	0	0	0	0	1	0	0	0	2195	681	24	2	216	2	C2orf51	2	88828655	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	418688	88828655	154370718	333	31983											
SNRNP200	23020	broad.mit.edu	37	chr2	96970651	96970651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttgacatgagcagggcCaattcctactatcatagtta	8	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96970651	A	A	96970651	1	1	15	0	1	0	0	0	0	0	0	0	14966	609	21	2		2	SNRNP200	2	96970651	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	8141996	96970651	146228722	334	31984											
ACTR1B	10120	broad.mit.edu	37	chr2	98273826	98273826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggacgtgagctggtgagcGggtctgggggcagcattcaa	19	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98273826	T	T	98273826	1	4	15	0	1	0	0	0	0	0	0	0	210	1131	39	1		1	ACTR1B	2	98273826	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1303175	98273826	144925547	335	31985											
ZAP70	7535	broad.mit.edu	37	chr2	98349797	98349797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagcccacccatccacGttgactcatgtgagttgggg	10	15	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98349797	T	T	98349797	2	4	15	1	0	0	0	0	0	0	0	1	17641	1132	40	3		3	ZAP70	2	98349797	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	75971	98349797	144849576	336	31986											
IL18RAP	8807	broad.mit.edu	37	chr2	103063349	103063350	+	Intron	DNP	AG	TT	TT													gttcctttttatggctaagtAgtattccatggtgtgatttg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	103063350	TT	TT	103063349	1	4	15	0	1	0	0	0	0	0	0	0	7718	435	15	5		5	IL18RAP	2	103063349	Intron	DNP	AG	TCGA-05-4410-01A-21D-1855-08	4713552	103063349	140136024	337	31987											
SLC9A4	389015	broad.mit.edu	37	chr2	103141365	103141365	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaaggcaaatgcttagctGacctccaaggtgctcacctg	9	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103141365	C	C	103141365	1	2	15	0	1	0	0	0	0	0	0	0	14830	1305	45	4		4	SLC9A4	2	103141365	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	78016	103141365	140058008	338	31988											
SLC9A2	6549	broad.mit.edu	37	chr2	103300762	103300762	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattgtttattacggctgcCattgttgtcatattctttac	6	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103300762	T	T	103300762	2	4	15	1	0	0	0	0	0	0	0	1	14826	581	21	4		4	SLC9A2	2	103300762	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	159397	103300762	139898611	339	31989											
UXS1	80146	broad.mit.edu	37	chr2	106739487	106739487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcatcgtagcaggccCgaggtcctattggattcacg	11	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106739487	A	A	106739487	3	1	15	1	0	0	0	0	1	0	0	0	17236	652	23	1	607	1	UXS1	2	106739487	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3438725	106739487	136459886	340	31990											
RGPD3	653489	broad.mit.edu	37	chr2	107049492	107049492	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atactaaaaaaaaaataaaaAtaacaaaagagcatttaaaa	2	3	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107049492	G	G	107049492	1	3	15	0	1	0	0	0	0	0	0	0	13395	116	4	5		5	RGPD3	2	107049492	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	310005	107049492	136149881	341	31991											
RGPD4	285190	broad.mit.edu	37	chr2	108488503	108488503	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acctgatctagttgaagtatCcagtggtgaggaaaatgaaa	11	5	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108488503	G	G	108488503	3	3	15	1	0	0	0	0	1	0	0	0	13396	855	30	4	4121	4	RGPD4	2	108488503	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1439011	108488503	134710870	342	31992											
RGPD4	285190	broad.mit.edu	37	chr2	108494961	108494961	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgttactctgtctaaaTatgttcttctttaatttcac	5	8	6	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108494961	C	C	108494961	1	2	15	0	1	0	0	0	0	0	0	0	13396	1421	49	5		5	RGPD4	2	108494961	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	6458	108494961	134704412	343	31993											
EDAR	10913	broad.mit.edu	37	chr2	109524268	109524268	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttttagtcttgcggctgtGagggagccacatctcacagc	12	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109524268	T	T	109524268	1	4	15	0	1	0	0	0	0	0	0	0	4945	1305	45	3		3	EDAR	2	109524268	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1029307	109524268	133675105	344	31994											
ZC3H6	376940	broad.mit.edu	37	chr2	113069485	113069485	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccaataaagggcctaatGtgttttcagtatcggatgac	10	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113069485	A	A	113069485	3	1	15	1	0	0	0	0	1	0	0	0	17697	1377	48	4	736	4	ZC3H6	2	113069485	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3545217	113069485	130129888	345	31995											
INHBB	3625	broad.mit.edu	37	chr2	121107469	121107469	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtgcaaggcaggggcaCggtggtggggcacggagggc	22	8	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121107469	A	A	121107469	1	1	15	0	1	0	0	0	0	0	0	0	7812	551	19	3		3	INHBB	2	121107469	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	8037984	121107469	122091904	346	31996											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204404	125204404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggatgaccagcactggCactcggtcctcattgagcgg	12	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125204404	A	A	125204404	3	1	15	1	0	0	0	0	1	0	0	0	3682	710	25	3	830	3	CNTNAP5	2	125204404	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4096935	125204404	117994969	347	31997											
CNTNAP5	129684	broad.mit.edu	37	chr2	125405454	125405454	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggcagcatggaacagctgGaggccgtgatcgacggctct	17	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125405454	C	C	125405454	3	2	15	1	0	0	0	0	1	0	0	0	3682	1175	41	4	2043	4	CNTNAP5	2	125405454	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	201050	125405454	117793919	348	31998											
CNTNAP5	129684	broad.mit.edu	37	chr2	125505041	125505041	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattccccaagacagaaggaCatggatgagaaattcaatac	8	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125505041	G	G	125505041	1	3	15	0	1	0	0	0	0	0	0	0	3682	493	17	4		4	CNTNAP5	2	125505041	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	99587	125505041	117694332	349	31999											
CNTNAP5	129684	broad.mit.edu	37	chr2	125669151	125669151	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgaatgcaaaaagacaTaaacgatcctgtattctgga	8	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125669151	A	A	125669151	1	1	15	0	1	0	0	0	0	0	0	0	3682	1421	49	5		5	CNTNAP5	2	125669151	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	164110	125669151	117530222	350	32000											
BIN1	274	broad.mit.edu	37	chr2	127808384	127808384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtgggctcaccttgaaCatgaaacctgggggcaggtc	15	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127808384	A	A	127808384	3	1	15	1	0	0	0	0	1	0	0	0	1438	478	17	3	227	3	BIN1	2	127808384	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2139233	127808384	115390989	351	32001											
MYO7B	4648	broad.mit.edu	37	chr2	128351140	128351140	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaaggcaagctccgccAgatgaccctgggcatcactg	12	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128351140	T	T	128351140	3	4	15	1	0	0	0	0	1	0	0	0	10177	188	7	5	2231	5	MYO7B	2	128351140	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	542756	128351140	114848233	352	32002											
SAP130	79595	broad.mit.edu	37	chr2	128775444	128775444	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagctgctggaactcatgTgctccctggcactgacttca	12	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128775444	A	A	128775444	3	1	15	1	0	0	0	0	1	0	0	0	13942	1696	59	5	3091	5	SAP130	2	128775444	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	424304	128775444	114423929	353	32003											
POTEF	728378	broad.mit.edu	37	chr2	130832240	130832240	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcgtagctcttctctagGgaggagctggaggccaccgt	14	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832240	T	T	130832240	2	4	15	1	0	0	0	0	0	0	0	1	12361	1219	43	2		2	POTEF	2	130832240	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2056796	130832240	112367133	354	32004											
PTPN18	26469	broad.mit.edu	37	chr2	131117299	131117299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagctcctccttgaccccaGgacccgagggtccagctctt	9	17	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131117299	T	T	131117299	1	4	15	0	1	0	0	0	0	0	0	0	12890	1015	35	2		2	PTPN18	2	131117299	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	285059	131117299	112082074	355	32005											
FAM123C	205147	broad.mit.edu	37	chr2	131521368	131521368	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggcacacccgggcaccAcaggcctgctcgccggagag	15	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131521368	T	T	131521368	3	4	15	1	0	0	0	0	1	0	0	0	5470	159	6	5	1725	5	FAM123C	2	131521368	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	404069	131521368	111678005	356	32006											
FAM123C	205147	broad.mit.edu	37	chr2	131521382	131521382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccacaggcctgctcgcCggagagagcaaggccctcgg	15	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131521382	A	A	131521382	2	1	15	1	0	0	0	0	0	0	0	1	5470	639	23	1		1	FAM123C	2	131521382	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	14	131521382	111677991	357	32007											
TUBA3D	113457	broad.mit.edu	37	chr2	132238109	132238109	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatctcagctgagaaggcCtaccacgagcagctgtctgt	11	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132238109	A	A	132238109	2	1	15	1	0	0	0	0	0	0	0	1	16873	668	24	2		2	TUBA3D	2	132238109	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	716727	132238109	110961264	358	32008											
NCKAP5	344148	broad.mit.edu	37	chr2	133539711	133539711	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctcacactgtagttcaGgcttctttttctcttttttt	5	10	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133539711	C	C	133539711	3	2	15	1	0	0	0	0	1	0	0	0	10318	1000	35	4	1084	4	NCKAP5	2	133539711	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1301602	133539711	109659662	359	32009											
MGAT5	4249	broad.mit.edu	37	chr2	135102759	135102759	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtatggagtgttgctcattCgtaattgaaattcagattct	9	5	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135102759	T	T	135102759	1	4	15	0	1	0	0	0	0	0	0	0	9641	899	31	4		4	MGAT5	2	135102759	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1563048	135102759	108096614	360	32010											
CXCR4	7852	broad.mit.edu	37	chr2	136873041	136873041	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccaacatagaccaccttttCagccaacagcttccttggcc	6	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136873041	T	T	136873041	3	4	15	1	0	0	0	0	1	0	0	0	4126	835	29	4	605	4	CXCR4	2	136873041	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1770282	136873041	106326332	361	32011											
LRP1B	53353	broad.mit.edu	37	chr2	141079550	141079550	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctaacaggctgtcatcatTgcaggtgccattaatcaaat	7	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141079550	A	A	141079550	3	1	15	1	0	0	0	0	1	0	0	0	9042	1812	63	5	1217	5	LRP1B	2	141079550	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	4206509	141079550	102119823	362	32012											
LRP1B	53353	broad.mit.edu	37	chr2	141115485	141115485	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccatccagaacattttagtCatgtacaagcagaagttaga	7	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141115485	A	A	141115485	1	1	15	0	1	0	0	0	0	0	0	0	9042	841	29	3		3	LRP1B	2	141115485	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	35935	141115485	102083888	363	32013											
LRP1B	53353	broad.mit.edu	37	chr2	141747099	141747099	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatatccaagcaaacctttAcctgtgcaagtttgattgga	8	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141747099	T	T	141747099	5	4	15	1	0	0	0	0	0	0	1	0	9042	405	14	5	11327	5	LRP1B	2	141747099	Splice_Site	SNP	A	TCGA-05-4410-01A-21D-1855-08	631614	141747099	101452274	364	32014											
LRP1B	53353	broad.mit.edu	37	chr2	141771402	141771402	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgatattcaataagtaTaacagataataatctcatat	4	4	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141771402	A	A	141771402	1	1	15	0	1	0	0	0	0	0	0	0	9042	1421	49	5		5	LRP1B	2	141771402	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	24303	141771402	101427971	365	32015											
ZEB2	9839	broad.mit.edu	37	chr2	145156855	145156855	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacagatgacaagaggagGgctttattatcaacaaaaac	9	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145156855	T	T	145156855	2	4	15	1	0	0	0	0	0	0	0	1	17750	1219	43	2		2	ZEB2	2	145156855	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	3385453	145156855	98042518	366	32016											
ZEB2	9839	broad.mit.edu	37	chr2	145275040	145275040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgcgcccattgaaacgcGcgcgggccgcccaggggagc	16	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145275040	T	T	145275040	1	4	15	0	1	0	0	0	0	0	0	0	17750	1102	38	3		3	ZEB2	2	145275040	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	118185	145275040	97924333	367	32017											
RND3	390	broad.mit.edu	37	chr2	151331604	151331604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgactgtcacatcacgacCcaactcccacttcccctaat	3	17	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151331604	A	A	151331604	1	1	15	0	1	0	0	0	0	0	0	0	13532	638	22	2		2	RND3	2	151331604	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	6056564	151331604	91867769	368	32018											
NMI	9111	broad.mit.edu	37	chr2	152132019	152132019	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaatctccacaaacgtgaTgactgcactcccggactgtc	7	15	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152132019	C	C	152132019	3	2	15	1	0	0	0	0	1	0	0	0	10592	1464	51	5	322	5	NMI	2	152132019	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	800415	152132019	91067354	369	32019											
NEB	4703	broad.mit.edu	37	chr2	152466264	152466264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctcagaggcactgactGggcaatgaacaaatctacat	9	10	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152466264	T	T	152466264	1	4	15	0	1	0	0	0	0	0	0	0	10397	1363	47	2		2	NEB	2	152466264	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	334245	152466264	90733109	370	32020											
NEB	4703	broad.mit.edu	37	chr2	152507313	152507313	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcattttggctacattcatGgacaacacaagttttgggtc	9	8	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152507313	T	T	152507313	2	4	15	1	0	0	0	0	0	0	0	1	10397	1335	47	2		2	NEB	2	152507313	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	41049	152507313	90692060	371	32021											
GALNT13	114805	broad.mit.edu	37	chr2	155115717	155115717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcatgcacataccagtcCcagtaatttactgtcaaatc	6	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155115717	A	A	155115717	1	1	15	0	1	0	0	0	0	0	0	0	6273	638	22	2		2	GALNT13	2	155115717	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2608404	155115717	88083656	372	32022											
KCNJ3	3760	broad.mit.edu	37	chr2	155711841	155711841	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataacaaagcactcccttaGgcattatttaatgtttgatt	5	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155711841	T	T	155711841	1	4	15	0	1	0	0	0	0	0	0	0	8122	1015	35	2		2	KCNJ3	2	155711841	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	596124	155711841	87487532	373	32023											
GALNT5	11227	broad.mit.edu	37	chr2	158115854	158115854	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctgaagacagtggaacGcaccaggtgttaagaattga	11	7	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158115854	T	T	158115854	2	4	15	1	0	0	0	0	0	0	0	1	6278	1074	38	3		3	GALNT5	2	158115854	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2404013	158115854	85083519	374	32024											
ERMN	57471	broad.mit.edu	37	chr2	158178131	158178131	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtttagaatgtaacatGtcagcttggctaggttttcg	10	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158178131	A	A	158178131	2	1	15	1	0	0	0	0	0	0	0	1	5277	1368	48	4		4	ERMN	2	158178131	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	62277	158178131	85021242	375	32025											
PLA2R1	22925	broad.mit.edu	37	chr2	160798647	160798647	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaacgtacctttttctgGcagcgcctctgcagtgtgaa	9	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160798647	C	C	160798647	3	2	15	1	0	0	0	0	1	0	0	0	12105	1203	42	4	231	4	PLA2R1	2	160798647	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2620516	160798647	82400726	376	32026											
SLC4A10	57282	broad.mit.edu	37	chr2	162821590	162821590	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtatttgtaagaaagttGatggacttgttgttcacgaa	11	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162821590	A	A	162821590	2	1	15	1	0	0	0	0	0	0	0	1	14765	1281	45	4		4	SLC4A10	2	162821590	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2022943	162821590	80377783	377	32027											
DPP4	1803	broad.mit.edu	37	chr2	162876717	162876717	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacaagtaggtttatatccTatcaattgttacaatactca	5	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162876717	C	C	162876717	1	2	15	0	1	0	0	0	0	0	0	0	4769	1537	53	5		5	DPP4	2	162876717	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	55127	162876717	80322656	378	32028											
FAP	2191	broad.mit.edu	37	chr2	163081954	163081955	+	Intron	INS	-	A	A													ttggtcaatgaagagtgggcINSaaaggtttctgagggggaag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163081955	A	A	163081954	6	5	15	0	1	1	1	0	0	0	0	0	5730	725	25	0		0	FAP	2	163081954	Intron	INS	-	TCGA-05-4410-01A-21D-1855-08	205237	163081954	80117419	379	32029											
GCA	25801	broad.mit.edu	37	chr2	163212934	163212934	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atactctaatttaaatattgAatatgttttacagccttcag	4	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163212934	T	T	163212934	1	4	15	0	1	0	0	0	0	0	0	0	6345	261	9	5		5	GCA	2	163212934	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	130980	163212934	79986439	380	32030											
KCNH7	90134	broad.mit.edu	37	chr2	163228428	163228428	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaatctggcaaagaaggatGcctaattggatgaacgtaag	12	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163228428	A	A	163228428	3	1	15	1	0	0	0	0	1	0	0	0	8107	1319	46	4	92	4	KCNH7	2	163228428	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	15494	163228428	79970945	381	32031											
FIGN	55137	broad.mit.edu	37	chr2	164467481	164467481	+	Frame_Shift_Del	DEL	G	-	-													gtgtagccaggaacagtggtGgggggtaggggggtgggagc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164467481	-	-	164467481	7	5	15	1	0	1	0	1	0	0	0	0	5948	1335	47	0	1422	0	FIGN	2	164467481	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	1239053	164467481	78731892	382	32032											
GRB14	2888	broad.mit.edu	37	chr2	165404372	165404372	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctaaaatattcctgtttgTgtttttaataaattttattg	4	4	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165404372	A	A	165404372	1	1	15	0	1	0	0	0	0	0	0	0	6823	1711	59	5		5	GRB14	2	165404372	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	936891	165404372	77795001	383	32033											
SCN2A	6326	broad.mit.edu	37	chr2	166172032	166172032	+	Missense_Mutation	SNP	G	T	T													gagacttcagtggtgctggtGggataggagttttttcagag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166172032	T	T	166172032	3	4	15	1	0	0	0	0	1	0	0	0	14029	1348	47	2	1569	2	SCN2A	2	166172032	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	767660	166172032	77027341	384	32034	186	2									
SCN2A	6326	broad.mit.edu	37	chr2	166172034	166172034	+	Silent	SNP	G	T	T													gacttcagtggtgctggtggGataggagttttttcagagag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166172034	T	T	166172034	2	4	15	1	0	0	0	0	0	0	0	1	14029	1161	41	3		3	SCN2A	2	166172034	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2	166172034	77027339	385	32035	186	2									
SCN7A	6332	broad.mit.edu	37	chr2	167279698	167279698	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagatataacaaactgacaGgaagtgaaagagtaagagtg	11	3	0	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167279698	A	A	167279698	1	1	15	0	1	0	0	0	0	0	0	0	14036	1015	35	4		4	SCN7A	2	167279698	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1107664	167279698	75919675	386	32036											
XIRP2	129446	broad.mit.edu	37	chr2	168099305	168099305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttcagtagatgtgacagCattttcccagtcccctgaac	7	12	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168099305	A	A	168099305	3	1	15	1	0	0	0	0	1	0	0	0	17557	710	25	3	1433	3	XIRP2	2	168099305	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	819607	168099305	75100068	387	32037											
XIRP2	129446	broad.mit.edu	37	chr2	168108475	168108475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtaaatgagcttgcaatGtgttaaagaagattaaccat	10	4	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168108475	T	T	168108475	1	4	15	0	1	0	0	0	0	0	0	0	17557	1392	48	3		3	XIRP2	2	168108475	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	9170	168108475	75090898	388	32038											
G6PC2	57818	broad.mit.edu	37	chr2	169764033	169764033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaatgatcctcgaggggCtcaagggcacacagtcattg	14	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169764033	A	A	169764033	1	1	15	0	1	0	0	0	0	0	0	0	6204	812	28	3		3	G6PC2	2	169764033	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1655558	169764033	73435340	389	32039											
G6PC2	57818	broad.mit.edu	37	chr2	169764700	169764700	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccgacttcacagaatagCggcacaggccccattcccca	7	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169764700	A	A	169764700	1	1	15	0	1	0	0	0	0	0	0	0	6204	783	27	3		3	G6PC2	2	169764700	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	667	169764700	73434673	390	32040											
LRP2	4036	broad.mit.edu	37	chr2	170012818	170012818	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgttttccagggcggtcactCatagacgtgaagccatcagc	11	12	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170012818	T	T	170012818	3	4	15	1	0	0	0	0	1	0	0	0	9043	826	29	4	1910	4	LRP2	2	170012818	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	248118	170012818	73186555	391	32041											
LRP2	4036	broad.mit.edu	37	chr2	170163811	170163811	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcagtcattctcatcagctCcatcggggcagtctctgacg	11	13	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170163811	G	G	170163811	3	3	15	1	0	0	0	0	1	0	0	0	9043	855	30	4	13864	4	LRP2	2	170163811	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	150993	170163811	73035562	392	32042											
FASTKD1	79675	broad.mit.edu	37	chr2	170394674	170394674	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaattaataaaatactaatGaattttgatagctgagacct	6	4	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170394674	A	A	170394674	1	1	15	0	1	0	0	0	0	0	0	0	5742	1305	45	4		4	FASTKD1	2	170394674	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	230863	170394674	72804699	393	32043											
GAD1	2571	broad.mit.edu	37	chr2	171715317	171715317	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttaaaatctctgcagcctGagcacacaaacgtctgtttt	6	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171715317	C	C	171715317	3	2	15	1	0	0	0	0	1	0	0	0	6239	1291	45	4	1624	4	GAD1	2	171715317	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1320643	171715317	71484056	394	32044											
RAPGEF4	11069	broad.mit.edu	37	chr2	173825890	173825890	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagagctggaaaaattttacGaaatgccattctctctcgag	8	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173825890	C	C	173825890	3	2	15	1	0	0	0	0	1	0	0	0	13154	1058	37	4	678	4	RAPGEF4	2	173825890	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2110573	173825890	69373483	395	32045											
SCRN3	79634	broad.mit.edu	37	chr2	175292567	175292567	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaatctctttcctcagtgtAcaaaagatgaaattcaaatt	4	7	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175292567	G	G	175292567	3	3	15	1	0	0	0	0	1	0	0	0	14053	391	14	5	1245	5	SCRN3	2	175292567	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1466677	175292567	67906806	396	32046											
HOXD13	3239	broad.mit.edu	37	chr2	176958400	176958400	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaatcttcctttccagGtaggggcgatggagaaaagg	14	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176958400	T	T	176958400	5	4	15	1	0	0	0	0	0	0	1	0	7389	1275	44	3	784	3	HOXD13	2	176958400	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	1665833	176958400	66240973	397	32047											
OSBPL6	114880	broad.mit.edu	37	chr2	179247688	179247688	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttatttgaaagttatttcCcttcttgattttgtgaaatc	5	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179247688	T	T	179247688	1	4	15	0	1	0	0	0	0	0	0	0	11375	638	22	4		4	OSBPL6	2	179247688	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2289288	179247688	63951685	398	32048											
PRKRA	8575	broad.mit.edu	37	chr2	179315274	179315274	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggccagggccagagctggcGaggctggggcgcacctgtct	18	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179315274	A	A	179315274	1	1	15	0	1	0	0	0	0	0	0	0	12630	1073	37	4		4	PRKRA	2	179315274	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	67586	179315274	63884099	399	32049											
TTN	7273	broad.mit.edu	37	chr2	179398288	179398288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgttggaggtgggtgtaGggttactgtcagctttgctt	15	5	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179398288	T	T	179398288	3	4	15	1	0	0	0	0	1	0	0	0	16861	991	35	2	4945	2	TTN	2	179398288	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	83014	179398288	63801085	400	32050											
TTN	7273	broad.mit.edu	37	chr2	179411856	179411856	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accagttactttgtagttgcActctaagcatggcactttgt	8	9	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179411856	T	T	179411856	3	4	15	1	0	0	0	0	1	0	0	0	16861	159	6	5	13675	5	TTN	2	179411856	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	13568	179411856	63787517	401	32051											
TTN	7273	broad.mit.edu	37	chr2	179431857	179431857	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttctgaagcaacaacagtCcaggcaagtcgactggtttc	9	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179431857	T	T	179431857	4	4	15	1	0	0	0	0	0	1	0	0	16861	856	30	4	29125	4	TTN	2	179431857	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	20001	179431857	63767516	402	32052											
TTN	7273	broad.mit.edu	37	chr2	179451623	179451623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagttttagtatggatttGctccaatgtacatagaacct	8	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179451623	T	T	179451623	1	4	15	0	1	0	0	0	0	0	0	0	16861	1334	46	3		3	TTN	2	179451623	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	19766	179451623	63747750	403	32053											
TTN	7273	broad.mit.edu	37	chr2	179473146	179473146	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggttcattccatttcacTagcatactgttgctggtaac	7	9	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179473146	A	A	179473146	2	1	15	1	0	0	0	0	0	0	0	1	16861	1509	53	5		5	TTN	2	179473146	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	21523	179473146	63726227	404	32054											
TTN	7273	broad.mit.edu	37	chr2	179480255	179480255	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcttacacaggccacctAtgcagttctcttcacattgc	6	14	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179480255	G	G	179480255	1	3	15	0	1	0	0	0	0	0	0	0	16861	464	16	5		5	TTN	2	179480255	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	7109	179480255	63719118	405	32055											
TTN	7273	broad.mit.edu	37	chr2	179494983	179494983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacgcttaactcggaggtGggcactagatttaacattgg	11	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179494983	T	T	179494983	3	4	15	1	0	0	0	0	1	0	0	0	16861	1348	47	2	63923	2	TTN	2	179494983	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	14728	179494983	63704390	406	32056											
TTN	7273	broad.mit.edu	37	chr2	179516903	179516903	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctacctttggcacctctGggactttaaaagatattatt	7	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179516903	T	T	179516903	3	4	15	1	0	0	0	0	1	0	0	0	16861	1348	47	2	68692	2	TTN	2	179516903	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	21920	179516903	63682470	407	32057											
TTN	7273	broad.mit.edu	37	chr2	179554793	179554793	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactattccaaggatcacaaTgtgataaatatcacaaataa	4	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179554793	C	C	179554793	1	2	15	0	1	0	0	0	0	0	0	0	16861	1479	51	5		5	TTN	2	179554793	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	37890	179554793	63644580	408	32058											
TTN	7273	broad.mit.edu	37	chr2	179583950	179583950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacattggcagccacacacGtgtatatgcctgtgtcggag	11	11	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179583950	T	T	179583950	3	4	15	1	0	0	0	0	1	0	0	0	16861	1145	40	3	80482	3	TTN	2	179583950	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	29157	179583950	63615423	409	32059											
TTN	7273	broad.mit.edu	37	chr2	179595571	179595571	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtcaatctactaatttGtttttgtttttttttttaaa	4	3	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179595571	C	C	179595571	1	2	15	0	1	0	0	0	0	0	0	0	16861	1392	48	4		4	TTN	2	179595571	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	11621	179595571	63603802	410	32060											
TTN	7273	broad.mit.edu	37	chr2	179602947	179602947	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatcgaatagaacactTgtcactctcataaatttctc	5	9	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179602947	A	A	179602947	4	1	15	1	0	0	0	0	0	1	0	0	16861	1821	63	5	90552	5	TTN	2	179602947	Nonsense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	7376	179602947	63596426	411	32061											
TTN	7273	broad.mit.edu	37	chr2	179611108	179611108	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactcacaatcatacttttaTggtcaggagtaaattcggga	9	7	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179611108	C	C	179611108	3	2	15	1	0	0	0	0	1	0	0	0	16861	1464	51	5	94278	5	TTN	2	179611108	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	8161	179611108	63588265	412	32062											
TTN	7273	broad.mit.edu	37	chr2	179613326	179613326	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttggattttaaaataagCttcttctggttgaccactat	7	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179613326	G	G	179613326	3	3	15	1	0	0	0	0	1	0	0	0	16861	797	28	4	96496	4	TTN	2	179613326	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2218	179613326	63586047	413	32063											
TTN	7273	broad.mit.edu	37	chr2	179664292	179664292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgatggggactgctgcCgagccagctgtgctttggca	17	10	0	0	rs151174349		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179664292	A	A	179664292	3	1	15	1	0	0	0	0	1	0	0	0	16861	652	23	1	110580	1	TTN	2	179664292	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	50966	179664292	63535081	414	32064											
TTN	7273	broad.mit.edu	37	chr2	179664422	179664422	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctatgaccatctcaactgTtgcaattgatctggcatcaa	6	10	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179664422	C	C	179664422	3	2	15	1	0	0	0	0	1	0	0	0	16861	1725	60	5	110710	5	TTN	2	179664422	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	130	179664422	63534951	415	32065											
NEUROD1	4760	broad.mit.edu	37	chr2	182542478	182542478	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacagtcactgtaagcacaGtgggttcgtttcccggaaat	11	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182542478	T	T	182542478	1	4	15	0	1	0	0	0	0	0	0	0	10443	1044	36	3		3	NEUROD1	2	182542478	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	2878056	182542478	60656895	416	32066											
NUP35	129401	broad.mit.edu	37	chr2	183993024	183993024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattcatgtaggatctgaacCaatgatgctgggttcaccca	10	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183993024	T	T	183993024	3	4	15	1	0	0	0	0	1	0	0	0	10858	594	21	4	56	4	NUP35	2	183993024	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1450546	183993024	59206349	417	32067											
ITGAV	3685	broad.mit.edu	37	chr2	187487164	187487164	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggataaaattttggtgagtCttctggatatttacttacag	9	4	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187487164	G	G	187487164	1	3	15	0	1	0	0	0	0	0	0	0	7958	928	32	4		4	ITGAV	2	187487164	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3494140	187487164	55712209	418	32068											
FAM171B	165215	broad.mit.edu	37	chr2	187625984	187625984	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagaaaatggctataaacAcagaaaactatcaagttatg	7	5	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187625984	C	C	187625984	1	2	15	0	1	0	0	0	0	0	0	0	5536	174	6	5		5	FAM171B	2	187625984	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	138820	187625984	55573389	419	32069											
FAM171B	165215	broad.mit.edu	37	chr2	187626951	187626951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgatactcaagcagcttaCtggaatccgtctctgttcct	8	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187626951	A	A	187626951	3	1	15	1	0	0	0	0	1	0	0	0	5536	564	20	3	1912	3	FAM171B	2	187626951	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	967	187626951	55572422	420	32070											
FAM171B	165215	broad.mit.edu	37	chr2	187627260	187627260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacattcatcaaaagcatgCatcagcccaagatcctttac	4	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187627260	A	A	187627260	3	1	15	1	0	0	0	0	1	0	0	0	5536	710	25	3	2221	3	FAM171B	2	187627260	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	309	187627260	55572113	421	32071											
CALCRL	10203	broad.mit.edu	37	chr2	188250312	188250312	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaaaattcagggtacacTttttctccatcattaagcca	5	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	188250312	C	C	188250312	3	2	15	1	0	0	0	0	1	0	0	0	2606	1609	56	5	1422	5	CALCRL	2	188250312	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	623052	188250312	54949061	422	32072											
COL5A2	1290	broad.mit.edu	37	chr2	189918982	189918982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattgaggtaaaaaatgcaCagaaatcttcatgcttagca	7	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189918982	A	A	189918982	1	1	15	0	1	0	0	0	0	0	0	0	3729	493	17	3		3	COL5A2	2	189918982	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1668670	189918982	53280391	423	32073											
STAT4	6775	broad.mit.edu	37	chr2	191937712	191937712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagatatttatcttattaaCaaattgccctatgatttctg	5	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191937712	A	A	191937712	1	1	15	0	1	0	0	0	0	0	0	0	15385	493	17	3		3	STAT4	2	191937712	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2018730	191937712	51261661	424	32074											
TMEFF2	23671	broad.mit.edu	37	chr2	193048988	193048988	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctagtcaacatataatctGaattatttattgggagataa	7	4	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193048988	T	T	193048988	1	4	15	0	1	0	0	0	0	0	0	0	16137	1305	45	3		3	TMEFF2	2	193048988	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1111276	193048988	50150385	425	32075											
ANKRD44	91526	broad.mit.edu	37	chr2	197890025	197890025	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcaaacaatagtacgtgaGtccaaattttgcaaaatgtt	7	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197890025	C	C	197890025	1	2	15	0	1	0	0	0	0	0	0	0	672	1044	36	4		4	ANKRD44	2	197890025	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4841037	197890025	45309348	426	32076											
SGOL2	151246	broad.mit.edu	37	chr2	201437779	201437779	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaatgaatcaaaaataAataagctcaggaataaagtg	7	4	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201437779	T	T	201437779	3	4	15	1	0	0	0	0	1	0	0	0	14330	14	1	5	2732	5	SGOL2	2	201437779	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	3547754	201437779	41761594	427	32077											
ALS2CR4	65062	broad.mit.edu	37	chr2	202494490	202494490	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtgccacatctctggtGgtccaggaaggcttcacgtc	12	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202494490	A	A	202494490	2	1	15	1	0	0	0	0	0	0	0	1	554	1335	47	4		4	ALS2CR4	2	202494490	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1056711	202494490	40704883	428	32078											
NOP58	51602	broad.mit.edu	37	chr2	203156054	203156054	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctctatagtactaatttttCtgatggcaatgatgattttt	7	5	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203156054	T	T	203156054	1	4	15	0	1	0	0	0	0	0	0	0	10635	928	32	4		4	NOP58	2	203156054	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	661564	203156054	40043319	429	32079											
CRYGD	1421	broad.mit.edu	37	chr2	208988977	208988977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagcagccgctgtccacGcgcgccgagttgcagcggct	13	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208988977	T	T	208988977	2	4	15	1	0	0	0	0	0	0	0	1	3949	1074	38	3		3	CRYGD	2	208988977	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	5832923	208988977	34210396	430	32080											
MAP2	4133	broad.mit.edu	37	chr2	210558918	210558918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaaagggacctccacaGtaagaataaggatgatttga	11	5	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210558918	T	T	210558918	3	4	15	1	0	0	0	0	1	0	0	0	9327	1029	36	3	2038	3	MAP2	2	210558918	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1569941	210558918	32640455	431	32081											
LANCL1	10314	broad.mit.edu	37	chr2	211301246	211301246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaggatttagtgacagaGggatgtgttatgttgctagt	14	2	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211301246	A	A	211301246	1	1	15	0	1	0	0	0	0	0	0	0	8692	1015	35	4		4	LANCL1	2	211301246	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	742328	211301246	31898127	432	32082											
CPS1	1373	broad.mit.edu	37	chr2	211512574	211512574	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccaatggctgatattgtgaGtgtattttccaggcatgtgg	12	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211512574	C	C	211512574	1	2	15	0	1	0	0	0	0	0	0	0	3855	1044	36	4		4	CPS1	2	211512574	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	211328	211512574	31686799	433	32083											
ERBB4	2066	broad.mit.edu	37	chr2	213291209	213291209	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatatttttattaaatagtTttcagaaaacctcaatctct	3	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	213291209	G	G	213291209	1	3	15	0	1	0	0	0	0	0	0	0	5251	1856	64	5		5	ERBB4	2	213291209	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1778635	213291209	29908164	434	32084											
FN1	2335	broad.mit.edu	37	chr2	216288040	216288040	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctactccctaaattgttgtCaaacaagacaacccacaagg	5	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216288040	T	T	216288040	1	4	15	0	1	0	0	0	0	0	0	0	6020	841	29	4		4	FN1	2	216288040	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2996831	216288040	26911333	435	32085											
CXCR2	3579	broad.mit.edu	37	chr2	219000010	219000010	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccagaagcgctacttggtCaaattcatatgtctcagcat	7	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219000010	T	T	219000010	2	4	15	1	0	0	0	0	0	0	0	1	4124	813	29	4		4	CXCR2	2	219000010	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2711970	219000010	24199363	436	32086											
VIL1	7429	broad.mit.edu	37	chr2	219299256	219299256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcacctgcagggaggcaCctcccgaactaacaacttgg	9	16	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219299256	A	A	219299256	3	1	15	1	0	0	0	0	1	0	0	0	17291	507	18	3	1558	3	VIL1	2	219299256	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	299246	219299256	23900117	437	32087											
BCS1L	617	broad.mit.edu	37	chr2	219527605	219527605	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttatctttgccttcctccaGacccagtaaagtaccaaggc	6	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219527605	A	A	219527605	5	1	15	1	0	0	0	0	0	0	1	0	1394	956	33	4	911	4	BCS1L	2	219527605	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	228349	219527605	23671768	438	32088											
STK36	27148	broad.mit.edu	37	chr2	219538431	219538431	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagagattgaaataatgcgGggtctgcggcatcccaacat	12	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219538431	T	T	219538431	2	4	15	1	0	0	0	0	0	0	0	1	15420	1219	43	2		2	STK36	2	219538431	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	10826	219538431	23660942	439	32089											
STK36	27148	broad.mit.edu	37	chr2	219566748	219566748	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgattccagattcctgcgGtccagcctccaactttggtt	9	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219566748	T	T	219566748	1	4	15	0	1	0	0	0	0	0	0	0	15420	1276	44	3		3	STK36	2	219566748	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	28317	219566748	23632625	440	32090											
CUL3	8452	broad.mit.edu	37	chr2	225368392	225368392	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacttagatatcatgttttTttcagagtcatcagaaacac	5	7	4	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	225368392	C	C	225368392	3	2	15	1	0	0	0	0	1	0	0	0	4089	1850	64	5	984	5	CUL3	2	225368392	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	5801644	225368392	17830981	441	32091											
COL4A4	1286	broad.mit.edu	37	chr2	228004920	228004920	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggcaaacagagcaatctCttcctccacaaggaccaatg	8	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228004920	A	A	228004920	3	1	15	1	0	0	0	0	1	0	0	0	3725	913	32	3	5103	3	COL4A4	2	228004920	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2636528	228004920	15194453	442	32092											
SPHKAP	80309	broad.mit.edu	37	chr2	229046274	229046274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgggcatagaaagaagcGggtcttaccttggtaccgag	13	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229046274	T	T	229046274	1	4	15	0	1	0	0	0	0	0	0	0	15166	1131	39	1		1	SPHKAP	2	229046274	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1041354	229046274	14153099	443	32093											
TRIP12	9320	broad.mit.edu	37	chr2	230664108	230664108	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacttaatcgactgtccatGggaaaatatgagataagttt	8	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230664108	A	A	230664108	1	1	15	0	1	0	0	0	0	0	0	0	16681	1363	47	4		4	TRIP12	2	230664108	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1617834	230664108	12535265	444	32094											
SP140	11262	broad.mit.edu	37	chr2	231175345	231175345	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttgggaggtgttcccctCcctcccatgactgagcccat	9	15	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231175345	A	A	231175345	1	1	15	0	1	0	0	0	0	0	0	0	15076	870	30	3		3	SP140	2	231175345	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	511237	231175345	12024028	445	32095											
DIS3L2	129563	broad.mit.edu	37	chr2	233001500	233001500	+	Intron	DEL	T	-	-													taggtggtctttaggtaaacTttttgtgtattttaattatt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	233001500	-	-	233001500	6	5	15	0	1	1	0	1	0	0	0	0	4577	1624	56	0		0	DIS3L2	2	233001500	Intron	DEL	T	TCGA-05-4410-01A-21D-1855-08	1826155	233001500	10197873	446	32096											
ALPPL2	251	broad.mit.edu	37	chr2	233274209	233274209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagggtgccaaggatggGgggctggcgggaaggggtca	22	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233274209	T	T	233274209	1	4	15	0	1	0	0	0	0	0	0	0	549	1247	43	2		2	ALPPL2	2	233274209	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	272709	233274209	9925164	447	32097											
SAG	6295	broad.mit.edu	37	chr2	234229371	234229371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtacttctcccgggtcCaggtgtatcctcctgtgggg	12	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234229371	A	A	234229371	3	1	15	1	0	0	0	0	1	0	0	0	13919	595	21	2	291	2	SAG	2	234229371	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	955162	234229371	8970002	448	32098											
UGT1A5	54579	broad.mit.edu	37	chr2	234656593	234656593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagagggaggtgtcagtGgtggatcttctcagccatgc	14	8	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234656593	T	T	234656593	1	4	15	0	1	0	0	0	0	0	0	0	17074	1363	47	2		2	UGT1A5	2	234656593	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	427222	234656593	8542780	449	32099											
TRPM8	79054	broad.mit.edu	37	chr2	234878910	234878910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactatgtggcgttcttcaCctcccccttcgtggtcttct	8	14	4	0	rs17862932	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234878910	A	A	234878910	3	1	15	1	0	0	0	0	1	0	0	0	16717	507	18	3	2257	3	TRPM8	2	234878910	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	222317	234878910	8320463	450	32100											
CXCR7	57007	broad.mit.edu	37	chr2	237489326	237489326	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtgaatatccaggccaAgaccacaggctatgacacgc	11	12	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237489326	T	T	237489326	3	4	15	1	0	0	0	0	1	0	0	0	4129	72	3	5	220	5	CXCR7	2	237489326	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	2610416	237489326	5710047	451	32101											
COL6A3	1293	broad.mit.edu	37	chr2	238261291	238261291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgagaagcctctgcatGgcatctgcccatcccacagg	9	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238261291	T	T	238261291	1	4	15	0	1	0	0	0	0	0	0	0	3733	1363	47	2		2	COL6A3	2	238261291	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	771965	238261291	4938082	452	32102											
COL6A3	1293	broad.mit.edu	37	chr2	238275663	238275663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttacccgcaggtgctcaaGgcccaccttagtgttggcgt	12	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238275663	T	T	238275663	3	4	15	1	0	0	0	0	1	0	0	0	3733	1000	35	2	4502	2	COL6A3	2	238275663	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	14372	238275663	4923710	453	32103											
HDAC4	9759	broad.mit.edu	37	chr2	239990288	239990288	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggggcaaactcgctggcgatCggcatgaccaccgttctgca	13	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	239990288	G	G	239990288	2	3	15	1	0	0	0	0	0	0	0	1	7076	871	31	4		4	HDAC4	2	239990288	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1714625	239990288	3209085	454	32104											
HDAC4	9759	broad.mit.edu	37	chr2	240111860	240111860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacccaacacactggccacCttcacggggcgggggggggg	16	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240111860	T	T	240111860	1	4	15	0	1	0	0	0	0	0	0	0	7076	696	24	4		4	HDAC4	2	240111860	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	121572	240111860	3087513	455	32105											
OR6B2	389090	broad.mit.edu	37	chr2	240969557	240969557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtagagctgcgtcatgCacccgacgaaagagatgcgt	13	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240969557	A	A	240969557	3	1	15	1	0	0	0	0	1	0	0	0	11282	710	25	3	650	3	OR6B2	2	240969557	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	857697	240969557	2229816	456	32106											
DUSP28	285193	broad.mit.edu	37	chr2	241500849	241500849	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagtcctgcctgcagggaGagcccccagccttagggttg	13	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241500849	A	A	241500849	3	1	15	1	0	0	0	0	1	0	0	0	4865	943	33	4	502	4	DUSP28	2	241500849	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	531292	241500849	1698524	457	32107											
KIF1A	547	broad.mit.edu	37	chr2	241684803	241684803	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagaggccctgggagggtCagtcagtggcagggatgggg	21	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241684803	A	A	241684803	1	1	15	0	1	0	0	0	0	0	0	0	8353	841	29	3		3	KIF1A	2	241684803	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	183954	241684803	1514570	458	32108											
AGXT	189	broad.mit.edu	37	chr2	241808247	241808247	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggccaaggccagtgcaGccccaggttcccgagcggca	13	15	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241808247	T	T	241808247	1	4	15	0	1	0	0	0	0	0	0	0	404	986	34	3		3	AGXT	2	241808247	5'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	123444	241808247	1391126	459	32109											
AGXT	189	broad.mit.edu	37	chr2	241808788	241808788	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggagcgcataggtaagggaGaggcccaggtggggatggcc	21	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241808788	A	A	241808788	1	1	15	0	1	0	0	0	0	0	0	0	404	957	33	4		4	AGXT	2	241808788	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	541	241808788	1390585	460	32110											
FARP2	9855	broad.mit.edu	37	chr2	242407622	242407622	+	Frame_Shift_Del	DEL	G	-	-													ggaaaaggctaccaaacgctGtaagaagttggaggcagtgt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	242407622	-	-	242407622	7	5	15	1	0	1	0	1	0	0	0	0	5734	1377	48	0	2027	0	FARP2	2	242407622	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	598834	242407622	791751	461	32111											
CHL1	10752	broad.mit.edu	37	chr3	369946	369946	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggatcccaaacgagggGcacatatctcactttcaagg	9	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	369946	T	T	369946	2	4	15	1	0	0	0	0	0	0	0	1	3380	1190	42	3		3	CHL1	3	369946	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08		369946	197652484	462	32112											
BHLHE40	8553	broad.mit.edu	37	chr3	5025075	5025075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcagctccccgttcctgGgcccacacccacaccagcct	7	20	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5025075	T	T	5025075	3	4	15	1	0	0	0	0	1	0	0	0	1429	1232	43	2	955	2	BHLHE40	3	5025075	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4655129	5025075	192997355	463	32113											
GRM7	2917	broad.mit.edu	37	chr3	7621006	7621006	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatagtatggcttgccttcAttccaattttttttggcacc	7	9	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7621006	G	G	7621006	3	3	15	1	0	0	0	0	1	0	0	0	6868	217	8	5	2443	5	GRM7	3	7621006	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	2595931	7621006	190401424	464	32114											
ARPC4	10093	broad.mit.edu	37	chr3	9839447	9839447	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaacgacacaacaagccGgaagtggaagtcaggtaggg	16	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9839447	A	A	9839447	2	1	15	1	0	0	0	0	0	0	0	1	977	1103	39	4		4	ARPC4	3	9839447	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2218441	9839447	188182983	465	32115											
IRAK2	3656	broad.mit.edu	37	chr3	10251392	10251392	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaggtaaatccacccctcGgctgcagcccccaagccatg	8	17	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10251392	A	A	10251392	1	1	15	0	1	0	0	0	0	0	0	0	7893	1131	39	4		4	IRAK2	3	10251392	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	411945	10251392	187771038	466	32116											
TATDN2	9797	broad.mit.edu	37	chr3	10291003	10291003	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctccagccggccagctcAgaggtctgcgtcgcgttctg	12	17	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10291003	T	T	10291003	3	4	15	1	0	0	0	0	1	0	0	0	15711	188	7	5	121	5	TATDN2	3	10291003	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	39611	10291003	187731427	467	32117											
HRH1	3269	broad.mit.edu	37	chr3	11276336	11276336	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggttataaatatgattcGatccttcccttcctgccggc	7	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11276336	T	T	11276336	1	4	15	0	1	0	0	0	0	0	0	0	7422	1073	37	3		3	HRH1	3	11276336	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	985333	11276336	186746094	468	32118											
TMEM40	55287	broad.mit.edu	37	chr3	12777078	12777078	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctaaacttctggaagaGggggatgaagccttggagga	15	7	1	2	rs147042676		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12777078	A	A	12777078	3	1	15	1	0	0	0	0	1	0	0	0	16286	1000	35	4	51	4	TMEM40	3	12777078	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1500742	12777078	185245352	469	32119											
HDAC11	79885	broad.mit.edu	37	chr3	13540103	13540103	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccagcccggcttggtggaActggcctgaaagggggctgg	18	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13540103	T	T	13540103	1	4	15	0	1	0	0	0	0	0	0	0	7073	58	2	5		5	HDAC11	3	13540103	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	763025	13540103	184482327	470	32120											
C3orf19	51244	broad.mit.edu	37	chr3	14706639	14706639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggggagactgtaagtgtGtgtggtatacagagctctgc	15	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14706639	T	T	14706639	1	4	15	0	1	0	0	0	0	0	0	0	2234	1392	48	3		3	C3orf19	3	14706639	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1166536	14706639	183315791	471	32121											
FGD5	152273	broad.mit.edu	37	chr3	14861919	14861919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctggagaaggagggcaGgctgcatcggacgccctggg	18	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14861919	T	T	14861919	3	4	15	1	0	0	0	0	1	0	0	0	5893	991	35	2	1343	2	FGD5	3	14861919	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	155280	14861919	183160511	472	32122											
BTD	686	broad.mit.edu	37	chr3	15686657	15686657	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttactttacgagaggcccAccttatccaaagagctgtat	7	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15686657	G	G	15686657	3	3	15	1	0	0	0	0	1	0	0	0	1560	159	6	5	1308	5	BTD	3	15686657	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	824738	15686657	182335773	473	32123											
EFHB	151651	broad.mit.edu	37	chr3	19984598	19984598	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccaatcagcaatcagattTggcatcaaaaactgtgttca	7	9	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19984598	C	C	19984598	1	2	15	0	1	0	0	0	0	0	0	0	4985	1827	63	5		5	EFHB	3	19984598	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	4297941	19984598	178037832	474	32124											
ZNF385D	79750	broad.mit.edu	37	chr3	21606120	21606120	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatatgatttgctttcttcgGtggggaagaggaaccccgaa	13	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21606120	A	A	21606120	2	1	15	1	0	0	0	0	0	0	0	1	18004	1252	44	4		4	ZNF385D	3	21606120	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1621522	21606120	176416310	475	32125											
THRB	7068	broad.mit.edu	37	chr3	24164475	24164475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcaggctcctatcatcCgcagatctgtcaccttcatc	7	15	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24164475	A	A	24164475	3	1	15	1	0	0	0	0	1	0	0	0	15998	652	23	1	103	1	THRB	3	24164475	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2558355	24164475	173857955	476	32126											
OXSM	54995	broad.mit.edu	37	chr3	25832986	25832986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaatgattcctcttgaaGttgtttctgaaactgctttg	10	6	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25832986	T	T	25832986	3	4	15	1	0	0	0	0	1	0	0	0	11429	1029	36	3	477	3	OXSM	3	25832986	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1668511	25832986	172189444	477	32127											
GADL1	339896	broad.mit.edu	37	chr3	30886021	30886021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcacaaaaaaagcattgCttattatcaaaggtagatga	7	5	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30886021	A	A	30886021	1	1	15	0	1	0	0	0	0	0	0	0	6245	812	28	3		3	GADL1	3	30886021	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5053035	30886021	167136409	478	32128											
ARPP21	10777	broad.mit.edu	37	chr3	35724358	35724358	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggcggctggaggctcagAatcaagaaagaagaaaatcc	13	7	2	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35724358	C	C	35724358	3	2	15	1	0	0	0	0	1	0	0	0	982	246	9	5	154	5	ARPP21	3	35724358	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	4838337	35724358	162298072	479	32129											
ARPP21	10777	broad.mit.edu	37	chr3	35771056	35771056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacctgctttatcagggaCacaaggctttcagatgtttg	9	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35771056	A	A	35771056	1	1	15	0	1	0	0	0	0	0	0	0	982	493	17	3		3	ARPP21	3	35771056	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	46698	35771056	162251374	480	32130											
ARPP21	10777	broad.mit.edu	37	chr3	35778812	35778812	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgcagccccaacagcaggtCcagccaccgcagccacagat	9	19	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35778812	A	A	35778812	2	1	15	1	0	0	0	0	0	0	0	1	982	842	30	3		3	ARPP21	3	35778812	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	7756	35778812	162243618	481	32131											
MLH1	4292	broad.mit.edu	37	chr3	37053461	37053461	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgtttcagtctcagccatGagacaataaatccttgtgtc	8	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37053461	A	A	37053461	1	1	15	0	1	0	0	0	0	0	0	0	9710	1305	45	4		4	MLH1	3	37053461	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1274649	37053461	160968969	482	32132											
C3orf35	339883	broad.mit.edu	37	chr3	37458935	37458935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagcagatgggcctgcagGgcagtgctcagcatttcaac	13	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37458935	T	T	37458935	3	4	15	1	0	0	0	0	1	0	0	0	2247	1232	43	2	180	2	C3orf35	3	37458935	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	405474	37458935	160563495	483	32133											
OXSR1	9943	broad.mit.edu	37	chr3	38293723	38293723	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccattttgattgtacggaGcatattcttaactaccattt	5	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38293723	A	A	38293723	1	1	15	0	1	0	0	0	0	0	0	0	11430	986	34	4		4	OXSR1	3	38293723	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	834788	38293723	159728707	484	32134											
SLC22A13	9390	broad.mit.edu	37	chr3	38317614	38317614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggctatccctcacccGcatgccccctcacccaccgg	9	21	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38317614	T	T	38317614	1	4	15	0	1	0	0	0	0	0	0	0	14557	1102	38	3		3	SLC22A13	3	38317614	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	23891	38317614	159704816	485	32135											
SCN10A	6336	broad.mit.edu	37	chr3	38768446	38768446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctggatccgtgccaggGccacctgcaggttgttcacc	12	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38768446	T	T	38768446	3	4	15	1	0	0	0	0	1	0	0	0	14025	1203	42	3	3180	3	SCN10A	3	38768446	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	450832	38768446	159253984	486	32136											
SCN10A	6336	broad.mit.edu	37	chr3	38781150	38781150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaatgattttgaagacCatttcagcagtaaaaaatat	7	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38781150	A	A	38781150	3	1	15	1	0	0	0	0	1	0	0	0	14025	594	21	2	3790	2	SCN10A	3	38781150	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	12704	38781150	159241280	487	32137											
SCN11A	11280	broad.mit.edu	37	chr3	38888221	38888221	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccttggccaccccaaaGctagacaagtctccattgca	7	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38888221	C	C	38888221	3	2	15	1	0	0	0	0	1	0	0	0	14026	962	34	4	39	4	SCN11A	3	38888221	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	107071	38888221	159134209	488	32138											
SCN11A	11280	broad.mit.edu	37	chr3	38888709	38888709	+	Missense_Mutation	SNP	A	C	C													gtcaaagtcatcttcacccaAagggtcctcactttcttcag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38888709	C	C	38888709	3	2	15	1	0	0	0	0	1	0	0	0	14026	11	1	5	527	5	SCN11A	3	38888709	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	488	38888709	159133721	489	32139	187	2									
SCN11A	11280	broad.mit.edu	37	chr3	38888711	38888711	+	Missense_Mutation	SNP	G	A	A													caaagtcatcttcacccaaaGggtcctcactttcttcagtg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38888711	A	A	38888711	3	1	15	1	0	0	0	0	1	0	0	0	14026	1000	35	4	529	4	SCN11A	3	38888711	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2	38888711	159133719	490	32140	187	2									
TTC21A	199223	broad.mit.edu	37	chr3	39170265	39170265	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggccctcaacaaggctggaGactatccagaggccataaag	12	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39170265	T	T	39170265	3	4	15	1	0	0	0	0	1	0	0	0	16813	942	33	3	1816	3	TTC21A	3	39170265	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	281554	39170265	158852165	491	32141											
XIRP1	165904	broad.mit.edu	37	chr3	39226647	39226648	+	Missense_Mutation	DNP	GG	TT	TT													gaggtgggatcatggttgagGgcattgagcttggggggctc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39226648	TT	TT	39226647	3	4	15	1	0	0	0	0	1	0	0	0	17556	1219	43	2	1245	2	XIRP1	3	39226647	Missense_Mutation	DNP	GG	TCGA-05-4410-01A-21D-1855-08	56382	39226647	158795783	492	32142											
CX3CR1	1524	broad.mit.edu	37	chr3	39308000	39308000	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattcagggaactgatccaTggtgaaggcctggatcagaa	13	7	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39308000	C	C	39308000	3	2	15	1	0	0	0	0	1	0	0	0	4108	1464	51	5	1070	5	CX3CR1	3	39308000	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	81353	39308000	158714430	493	32143											
LYZL4	131375	broad.mit.edu	37	chr3	42445656	42445656	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagataccatgctgccataTgacagttaagttagagtgat	10	6	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42445656	C	C	42445656	1	2	15	0	1	0	0	0	0	0	0	0	9221	1479	51	5		5	LYZL4	3	42445656	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	3137656	42445656	155576774	494	32144											
HHATL	57467	broad.mit.edu	37	chr3	42739589	42739589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaccccaatctgaaaaGggagattcagccctgttcta	9	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42739589	T	T	42739589	1	4	15	0	1	0	0	0	0	0	0	0	7157	1015	35	2		2	HHATL	3	42739589	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	293933	42739589	155282841	495	32145											
ZNF662	389114	broad.mit.edu	37	chr3	42956151	42956151	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatattctatatatgtgagGaatgcggcaagtgttttgat	10	3	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42956151	T	T	42956151	4	4	15	1	0	0	0	0	0	1	0	0	18198	1175	41	3	787	3	ZNF662	3	42956151	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	216562	42956151	155066279	496	32146											
SNRK	54861	broad.mit.edu	37	chr3	43389720	43389720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctctgcctcggctccCagcttcatgggagcaccaag	11	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43389720	A	A	43389720	3	1	15	1	0	0	0	0	1	0	0	0	14965	595	21	2	1987	2	SNRK	3	43389720	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	433569	43389720	154632710	497	32147											
ZNF502	91392	broad.mit.edu	37	chr3	44751545	44751545	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacttgtgcactgggcggGggatcaaccccttcttcaat	11	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44751545	A	A	44751545	1	1	15	0	1	0	0	0	0	0	0	0	18077	1247	43	4		4	ZNF502	3	44751545	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	1361825	44751545	153270885	498	32148											
KIF15	56992	broad.mit.edu	37	chr3	44889629	44889629	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttatggtagtatattttaGaaatcattttactattgaaa	5	2	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44889629	T	T	44889629	1	4	15	0	1	0	0	0	0	0	0	0	8347	957	33	3		3	KIF15	3	44889629	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	138084	44889629	153132801	499	32149											
PFKFB4	5210	broad.mit.edu	37	chr3	48563006	48563006	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcccacctacctccccttTagggtaccggtaccggtact	7	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48563006	C	C	48563006	3	2	15	1	0	0	0	0	1	0	0	0	11858	1763	61	5	345	5	PFKFB4	3	48563006	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	3673377	48563006	149459424	500	32150											
COL7A1	1294	broad.mit.edu	37	chr3	48604605	48604605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccttggggcctggctgccCgtcaaagcctcggtcaccct	11	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48604605	A	A	48604605	3	1	15	1	0	0	0	0	1	0	0	0	3736	652	23	1	809	1	COL7A1	3	48604605	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	41599	48604605	149417825	501	32151											
COL7A1	1294	broad.mit.edu	37	chr3	48605544	48605544	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaggccccggggacccatGaagccaacatctcctttttc	9	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48605544	C	C	48605544	3	2	15	1	0	0	0	0	1	0	0	0	3736	1281	45	4	1036	4	COL7A1	3	48605544	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	939	48605544	149416886	502	32152											
CELSR3	1951	broad.mit.edu	37	chr3	48697224	48697225	+	Missense_Mutation	DNP	CT	AA	AA													ttcacgtcattgaccatcacCtccacataagtagtgtctgc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	48697225	AA	AA	48697224	3	1	15	1	0	0	0	0	1	0	0	0	3253	680	24	2	7234	2	CELSR3	3	48697224	Missense_Mutation	DNP	CT	TCGA-05-4410-01A-21D-1855-08	91680	48697224	149325206	503	32153											
SLC25A20	788	broad.mit.edu	37	chr3	48929495	48929495	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaactcggtggctgtgtcTgcagtcggacctgaaaacag	13	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48929495	G	G	48929495	3	3	15	1	0	0	0	0	1	0	0	0	14597	1580	55	5	821	5	SLC25A20	3	48929495	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	232271	48929495	149092935	504	32154											
P4HTM	54681	broad.mit.edu	37	chr3	49044234	49044234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagccgagcgcggcaagCgctgttccaacaggagatgg	14	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49044234	A	A	49044234	3	1	15	1	0	0	0	0	1	0	0	0	11454	768	27	3	1620	3	P4HTM	3	49044234	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	114739	49044234	148978196	505	32155											
IP6K1	9807	broad.mit.edu	37	chr3	49785344	49785344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggcttgcacacagtgtgatCgtcgtaacgcatcatgctgc	12	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49785344	A	A	49785344	3	1	15	1	0	0	0	0	1	0	0	0	7858	884	31	3	1215	3	IP6K1	3	49785344	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	741110	49785344	148237086	506	32156											
SEMA3F	6405	broad.mit.edu	37	chr3	50211746	50211746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggacaggtgcctacaaccCcatgtgcacctatgtgaacc	10	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50211746	A	A	50211746	3	1	15	1	0	0	0	0	1	0	0	0	14142	623	22	2	433	2	SEMA3F	3	50211746	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	426402	50211746	147810684	507	32157											
DOCK3	1795	broad.mit.edu	37	chr3	51370646	51370646	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accggcatttcctttgtgacCtcagtcacccgcctcatgga	8	15	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51370646	G	G	51370646	2	3	15	1	0	0	0	0	0	0	0	1	4728	668	24	4		4	DOCK3	3	51370646	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1158900	51370646	146651784	508	32158											
GRM2	2912	broad.mit.edu	37	chr3	51747313	51747313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaggactttgtgctcaaCgtcaagtttgatggtaatgg	11	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51747313	A	A	51747313	3	1	15	1	0	0	0	0	1	0	0	0	6863	535	19	3	1281	3	GRM2	3	51747313	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	376667	51747313	146275117	509	32159											
DNAH1	25981	broad.mit.edu	37	chr3	52397186	52397186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgccctgatgggtttcCagggtctgaaaacttctgcc	11	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52397186	A	A	52397186	1	1	15	0	1	0	0	0	0	0	0	0	4637	609	21	2		2	DNAH1	3	52397186	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	649873	52397186	145625244	510	32160											
ITIH1	3697	broad.mit.edu	37	chr3	52813406	52813406	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaggacccaaatgtcattTaccctctgtctgtctgctgt	7	12	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52813406	A	A	52813406	1	1	15	0	1	0	0	0	0	0	0	0	7973	1769	61	5		5	ITIH1	3	52813406	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	416220	52813406	145209024	511	32161											
ITIH4	3700	broad.mit.edu	37	chr3	52850891	52850891	+	Intron	DEL	G	-	-													cctgccccgggctccagcctGggccttacccgggcatcact							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52850891	-	-	52850891	6	5	15	0	1	1	0	1	0	0	0	0	7976	1363	47	0		0	ITIH4	3	52850891	Intron	DEL	G	TCGA-05-4410-01A-21D-1855-08	37485	52850891	145171539	512	32162											
ITIH4	3700	broad.mit.edu	37	chr3	52863335	52863335	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggttgcagggtttcaatGccacctcagctcggggtgac	16	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52863335	A	A	52863335	1	1	15	0	1	0	0	0	0	0	0	0	7976	1334	46	4		4	ITIH4	3	52863335	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	12444	52863335	145159095	513	32163											
CACNA1D	776	broad.mit.edu	37	chr3	53766833	53766833	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcctataaaaaaagtatttCatttaaagtaggggaagagg	10	3	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53766833	G	G	53766833	1	3	15	0	1	0	0	0	0	0	0	0	2567	841	29	4		4	CACNA1D	3	53766833	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	903498	53766833	144255597	514	32164											
CACNA2D3	55799	broad.mit.edu	37	chr3	54914903	54914903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagaaggtaagatactgcCtggctcgtcttatcctttgg	11	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54914903	A	A	54914903	1	1	15	0	1	0	0	0	0	0	0	0	2576	696	24	2		2	CACNA2D3	3	54914903	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1148070	54914903	143107527	515	32165											
CACNA2D3	55799	broad.mit.edu	37	chr3	55107418	55107418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaagtcttcctcatgGctctttaattgacggatggt	12	7	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55107418	T	T	55107418	1	4	15	0	1	0	0	0	0	0	0	0	2576	1218	42	3		3	CACNA2D3	3	55107418	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	192515	55107418	142915012	516	32166											
ERC2	26059	broad.mit.edu	37	chr3	56468700	56468700	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgtatgaaaggacatcTgtgtgggaaagtccagcaga	13	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468700	A	A	56468700	2	1	15	1	0	0	0	0	0	0	0	1	5253	1567	55	5		5	ERC2	3	56468700	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	1361282	56468700	141553730	517	32167											
FLNB	2317	broad.mit.edu	37	chr3	58124020	58124020	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctccaggtcctggaatcGcctccactgtgaaaactggc	9	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58124020	A	A	58124020	3	1	15	1	0	0	0	0	1	0	0	0	5992	1087	38	4	5084	4	FLNB	3	58124020	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1655320	58124020	139898410	518	32168											
PTPRG	5793	broad.mit.edu	37	chr3	61975455	61975456	+	Missense_Mutation	DNP	GG	AT	AT													tgagtcttctaacaaaacctGgatgaaaaacacagggaaaa							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	61975456	AT	AT	61975455	3	1	15	1	0	0	0	0	1	0	0	0	12910	1357	47	4	357	4	PTPRG	3	61975455	Missense_Mutation	DNP	GG	TCGA-05-4410-01A-21D-1855-08	3851435	61975455	136046975	519	32169											
CADPS	8618	broad.mit.edu	37	chr3	62478012	62478012	+	Missense_Mutation	SNP	T	A	A													gctgaaatagtggaaaactgTcccatgtgtctggaggttgc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62478012	A	A	62478012	3	1	15	1	0	0	0	0	1	0	0	0	2596	1667	58	5	1268	5	CADPS	3	62478012	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	502557	62478012	135544418	520	32170	188	2									
CADPS	8618	broad.mit.edu	37	chr3	62478014	62478014	+	Missense_Mutation	SNP	C	A	A													tgaaatagtggaaaactgtcCcatgtgtctggaggttgcac							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62478014	A	A	62478014	3	1	15	1	0	0	0	0	1	0	0	0	2596	624	22	2	1270	2	CADPS	3	62478014	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2	62478014	135544416	521	32171	188	2									
ADAMTS9	56999	broad.mit.edu	37	chr3	64635302	64635302	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgagggcagaagtggccctCctacacttaccatatatggg	11	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64635302	A	A	64635302	1	1	15	0	1	0	0	0	0	0	0	0	273	870	30	3		3	ADAMTS9	3	64635302	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2157288	64635302	133387128	522	32172											
FAM19A1	407738	broad.mit.edu	37	chr3	68587838	68587838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacgtgaaaatctgcagaGggacacaacgtcagtgttca	11	8	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68587838	T	T	68587838	1	4	15	0	1	0	0	0	0	0	0	0	5578	1015	35	2		2	FAM19A1	3	68587838	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3952536	68587838	129434592	523	32173											
TMF1	7110	broad.mit.edu	37	chr3	69084042	69084042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttattcacacaagccaCaaaaattcagcaaatgctag	5	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69084042	A	A	69084042	1	1	15	0	1	0	0	0	0	0	0	0	16351	493	17	3		3	TMF1	3	69084042	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	496204	69084042	128938388	524	32174											
SHQ1	55164	broad.mit.edu	37	chr3	72842268	72842268	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatatatctaaagcagcTcagaatcctgatcatttctt	6	8	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72842268	A	A	72842268	1	1	15	0	1	0	0	0	0	0	0	0	14405	1566	54	5		5	SHQ1	3	72842268	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	3758226	72842268	125180162	525	32175											
PDZRN3	23024	broad.mit.edu	37	chr3	73433421	73433421	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagggtgagcggggtgcTgcggcagctctcgcctgtgt	17	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73433421	A	A	73433421	3	1	15	1	0	0	0	0	1	0	0	0	11803	1580	55	5	908	5	PDZRN3	3	73433421	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	591153	73433421	124589009	526	32176											
PDZRN3	23024	broad.mit.edu	37	chr3	73438909	73438909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctagacctatcattagaaCcagtttgttctttagtgata	6	9	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73438909	A	A	73438909	1	1	15	0	1	0	0	0	0	0	0	0	11803	522	18	3		3	PDZRN3	3	73438909	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5488	73438909	124583521	527	32177											
CNTN3	5067	broad.mit.edu	37	chr3	74414578	74414578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttcctcctgtaccactgCttagaagtaaaggaaagtgt	8	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74414578	A	A	74414578	1	1	15	0	1	0	0	0	0	0	0	0	3674	812	28	3		3	CNTN3	3	74414578	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	975669	74414578	123607852	528	32178											
CADM2	253559	broad.mit.edu	37	chr3	86062198	86062198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgagacctctatgatctGtagaactagtccttatagga	8	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86062198	T	T	86062198	1	4	15	0	1	0	0	0	0	0	0	0	2593	1392	48	3		3	CADM2	3	86062198	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	11647620	86062198	111960232	529	32179											
CADM2	253559	broad.mit.edu	37	chr3	86062313	86062313	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaacgaataaaagaactGagtgaagacgaaatcaggac	10	5	1	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86062313	A	A	86062313	1	1	15	0	1	0	0	0	0	0	0	0	2593	1305	45	4		4	CADM2	3	86062313	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	115	86062313	111960117	530	32180											
HTR1F	3355	broad.mit.edu	37	chr3	88039965	88039965	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttaaacagaatgccatcCaaaattctggtgtccctcac	6	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88039965	G	G	88039965	2	3	15	1	0	0	0	0	0	0	0	1	7510	581	21	4		4	HTR1F	3	88039965	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1977652	88039965	109982465	531	32181											
EPHA3	2042	broad.mit.edu	37	chr3	89259220	89259220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcaaggagacattcaacCtgtactacatggagtctgat	9	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89259220	A	A	89259220	3	1	15	1	0	0	0	0	1	0	0	0	5210	680	24	2	374	2	EPHA3	3	89259220	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1219255	89259220	108763210	532	32182											
EPHA3	2042	broad.mit.edu	37	chr3	89390124	89390124	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagtgtgctaagtgcccGcctcacagttctactcagga	10	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89390124	T	T	89390124	2	4	15	1	0	0	0	0	0	0	0	1	5210	1074	38	3		3	EPHA3	3	89390124	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	130904	89390124	108632306	533	32183											
EPHA3	2042	broad.mit.edu	37	chr3	89498604	89498604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggaacataatgtaactgGgtggctcctggtttataaca	11	6	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89498604	T	T	89498604	1	4	15	0	1	0	0	0	0	0	0	0	5210	1247	43	2		2	EPHA3	3	89498604	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	108480	89498604	108523826	534	32184											
PROS1	5627	broad.mit.edu	37	chr3	93605239	93605240	+	Nonsense_Mutation	DNP	CC	AT	AT													tgcaaagtatactttggtttCcagcaatccattttccggct							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	93605240	AT	AT	93605239	4	1	15	1	0	0	0	0	0	1	0	0	12664	864	30	3	786	3	PROS1	3	93605239	Nonsense_Mutation	DNP	CC	TCGA-05-4410-01A-21D-1855-08	4106635	93605239	104417191	535	32185											
ARL13B	200894	broad.mit.edu	37	chr3	93722539	93722539	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctcctactgttggattttCaaaaattaaccttagacaag	6	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93722539	T	T	93722539	3	4	15	1	0	0	0	0	1	0	0	0	931	838	29	4	177	4	ARL13B	3	93722539	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	117300	93722539	104299891	536	32186											
OR5K4	403278	broad.mit.edu	37	chr3	98073305	98073305	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaatgatatatatcttttCaataccaattcaaatcttta	1	7	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98073305	A	A	98073305	4	1	15	1	0	0	0	0	0	1	0	0	11263	838	29	3	610	3	OR5K4	3	98073305	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4350766	98073305	99949125	537	32187											
OR5K1	26339	broad.mit.edu	37	chr3	98188929	98188929	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atttaggttagttttctgtgGatcgaatcacatcaaccact	7	8	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98188929	C	C	98188929	3	2	15	1	0	0	0	0	1	0	0	0	11260	1174	41	4	511	4	OR5K1	3	98188929	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	115624	98188929	99833501	538	32188											
OR5K1	26339	broad.mit.edu	37	chr3	98189049	98189049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttcagttcaagtctttaCcataggtagtgtcttaatat	8	6	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98189049	A	A	98189049	3	1	15	1	0	0	0	0	1	0	0	0	11260	507	18	3	631	3	OR5K1	3	98189049	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	120	98189049	99833381	539	32189											
OR5K2	402135	broad.mit.edu	37	chr3	98216531	98216531	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagagaggtcaggaatggttGaagaaaatcataccatgaaa	11	5	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98216531	A	A	98216531	3	1	15	1	0	0	0	0	1	0	0	0	11261	1291	45	4	9	4	OR5K2	3	98216531	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	27482	98216531	99805899	540	32190											
CEP97	79598	broad.mit.edu	37	chr3	101443556	101443556	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggacgcggctttgcctccCggagaaggtaaggcgatccc	15	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101443556	T	T	101443556	2	4	15	1	0	0	0	0	0	0	0	1	3293	639	23	4		4	CEP97	3	101443556	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3227025	101443556	96578874	541	32191											
CEP97	79598	broad.mit.edu	37	chr3	101447769	101447769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtgatctatctaaattGgtatccctgaaagtaagtat	8	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101447769	T	T	101447769	3	4	15	1	0	0	0	0	1	0	0	0	3293	1339	47	2	449	2	CEP97	3	101447769	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4213	101447769	96574661	542	32192											
NFKBIZ	64332	broad.mit.edu	37	chr3	101574011	101574011	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgctggggaagaacacctCtgcatgtgtgtgctgagaag	14	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101574011	G	G	101574011	3	3	15	1	0	0	0	0	1	0	0	0	10478	912	32	4	1575	4	NFKBIZ	3	101574011	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	126242	101574011	96448419	543	32193											
ALCAM	214	broad.mit.edu	37	chr3	105251012	105251012	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaaggctttgctcttgtgGagatgacagtgttgcagcta	13	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105251012	T	T	105251012	1	4	15	0	1	0	0	0	0	0	0	0	487	1189	41	3		3	ALCAM	3	105251012	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3677001	105251012	92771418	544	32194											
HHLA2	11148	broad.mit.edu	37	chr3	108095392	108095392	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagtgcacccgataatggCgaagaaaatgtggtaaggca	12	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108095392	G	G	108095392	2	3	15	1	0	0	0	0	0	0	0	1	7162	755	27	4		4	HHLA2	3	108095392	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2844380	108095392	89927038	545	32195											
MYH15	22989	broad.mit.edu	37	chr3	108178190	108178190	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttcctagtgtgaattacAaagaaatctagttcttacct	5	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108178190	G	G	108178190	1	3	15	0	1	0	0	0	0	0	0	0	10128	145	5	5		5	MYH15	3	108178190	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	82798	108178190	89844240	546	32196											
MYH15	22989	broad.mit.edu	37	chr3	108189605	108189605	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaactgccttgacagcttGgcatccagggccctgttgat	11	11	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108189605	T	T	108189605	2	4	15	1	0	0	0	0	0	0	0	1	10128	1335	47	2		2	MYH15	3	108189605	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	11415	108189605	89832825	547	32197											
CD96	10225	broad.mit.edu	37	chr3	111342670	111342670	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaacaccactcctcaacGtgagttcagcaaagttttcc	6	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111342670	T	T	111342670	5	4	15	1	0	0	0	0	0	0	1	0	3078	1159	40	3	1336	3	CD96	3	111342670	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	3153065	111342670	86679760	548	32198											
SLC9A10	285335	broad.mit.edu	37	chr3	111901144	111901144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagggatgaaccaaactGctgttcccagaatgtttaag	10	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111901144	T	T	111901144	1	4	15	0	1	0	0	0	0	0	0	0	14824	1334	46	3		3	SLC9A10	3	111901144	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	558474	111901144	86121286	549	32199											
SLC9A10	285335	broad.mit.edu	37	chr3	111997789	111997789	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctcctaaatctaacagTagagaaagacaatttttaaa	7	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111997789	A	A	111997789	1	1	15	0	1	0	0	0	0	0	0	0	14824	1653	57	5		5	SLC9A10	3	111997789	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	96645	111997789	86024641	550	32200											
CCDC80	151887	broad.mit.edu	37	chr3	112358703	112358703	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggttctgatccacacactAgccacatggccaacagcata	9	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112358703	G	G	112358703	3	3	15	1	0	0	0	0	1	0	0	0	2882	420	15	5	2830	5	CCDC80	3	112358703	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	360914	112358703	85663727	551	32201											
CD200R1	131450	broad.mit.edu	37	chr3	112648058	112648058	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacacttggaggtgatatcCacgatggaaattcccatcag	9	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112648058	A	A	112648058	4	1	15	1	0	0	0	0	0	1	0	0	3011	603	21	2	614	2	CD200R1	3	112648058	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	289355	112648058	85374372	552	32202											
GTPBP8	29083	broad.mit.edu	37	chr3	112710111	112710111	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaacatcttcacggccactGaacggaaccgcatcgactac	7	15	2	1	rs146036883	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112710111	A	A	112710111	3	1	15	1	0	0	0	0	1	0	0	0	6949	1291	45	4	267	4	GTPBP8	3	112710111	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	62053	112710111	85312319	553	32203											
SIDT1	54847	broad.mit.edu	37	chr3	113330062	113330062	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaataaacaaacaacaatCaagtgaacgggtttggatta	7	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113330062	G	G	113330062	1	3	15	0	1	0	0	0	0	0	0	0	14415	841	29	4		4	SIDT1	3	113330062	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	619951	113330062	84692368	554	32204											
GRAMD1C	54762	broad.mit.edu	37	chr3	113604246	113604247	+	Intron	DNP	GG	TT	TT													ttgcgggggcagatccgcacGgtaattcagtaccaaactgt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	113604247	TT	TT	113604246	1	4	15	0	1	0	0	0	0	0	0	0	6815	1131	39	1		1	GRAMD1C	3	113604246	Intron	DNP	GG	TCGA-05-4410-01A-21D-1855-08	274184	113604246	84418184	555	32205											
KIAA1407	57577	broad.mit.edu	37	chr3	113737532	113737532	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaataatgatacctgttttCttccctaagatcattttcca	3	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113737532	G	G	113737532	3	3	15	1	0	0	0	0	1	0	0	0	8299	922	32	4	1694	4	KIAA1407	3	113737532	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	133286	113737532	84284898	556	32206											
LSAMP	4045	broad.mit.edu	37	chr3	115560789	115560789	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacgttggtcaccgtcagGgaagactggccctccgtgct	14	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115560789	T	T	115560789	2	4	15	1	0	0	0	0	0	0	0	1	9135	1219	43	2		2	LSAMP	3	115560789	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1823257	115560789	82461641	557	32207											
LSAMP	4045	broad.mit.edu	37	chr3	116163786	116163786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctcggttaaaatccacGctgcgaacaggcagtcctgt	11	12	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116163786	T	T	116163786	3	4	15	1	0	0	0	0	1	0	0	0	9135	1078	38	3	951	3	LSAMP	3	116163786	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	602997	116163786	81858644	558	32208											
ARHGAP31	57514	broad.mit.edu	37	chr3	119112485	119112485	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatacaaatatttgtttcctAactctgcttattaagtcttt	4	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119112485	T	T	119112485	1	4	15	0	1	0	0	0	0	0	0	0	882	377	13	5		5	ARHGAP31	3	119112485	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2948699	119112485	78909945	559	32209											
KTELC1	56983	broad.mit.edu	37	chr3	119199121	119199121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttgagacggaGtttcgccctttttgcccagg	9	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119199121	T	T	119199121	1	4	15	0	1	0	0	0	0	0	0	0	8655	1044	36	3		3	KTELC1	3	119199121	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	86636	119199121	78823309	560	32210											
KTELC1	56983	broad.mit.edu	37	chr3	119207715	119207715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtttaacaatgcttgctGcacagtgatcacaataaatg	7	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119207715	T	T	119207715	1	4	15	0	1	0	0	0	0	0	0	0	8655	1334	46	3		3	KTELC1	3	119207715	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	8594	119207715	78814715	561	32211											
POPDC2	64091	broad.mit.edu	37	chr3	119367552	119367552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagacaataaaagtttaaaCtagaaaatttgtccatgctg	7	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119367552	A	A	119367552	1	1	15	0	1	0	0	0	0	0	0	0	12350	580	20	3		3	POPDC2	3	119367552	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	159837	119367552	78654878	562	32212											
C3orf15	89876	broad.mit.edu	37	chr3	119466073	119466073	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaatagagaagatggctGagaaaatcaatgacattgct	10	5	1	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119466073	T	T	119466073	4	4	15	1	0	0	0	0	0	1	0	0	2231	1291	45	3	2072	3	C3orf15	3	119466073	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	98521	119466073	78556357	563	32213											
GPR156	165829	broad.mit.edu	37	chr3	119887165	119887165	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataggtgcactcagctgacaTcagcctcacaatcttctctt	6	13	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119887165	A	A	119887165	3	1	15	1	0	0	0	0	1	0	0	0	6726	1435	50	5	1289	5	GPR156	3	119887165	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	421092	119887165	78135265	564	32214											
STXBP5L	9515	broad.mit.edu	37	chr3	121126217	121126217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgaaaatgaaaaatcttgGagaaggaaagtggtaatgaa	12	1	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121126217	T	T	121126217	3	4	15	1	0	0	0	0	1	0	0	0	15475	1183	41	3	2877	3	STXBP5L	3	121126217	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1239052	121126217	76896213	565	32215											
GOLGB1	2804	broad.mit.edu	37	chr3	121417022	121417022	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cataatcaagtcttctttgcCtttctgcttctgcaaggttc	6	11	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121417022	G	G	121417022	3	3	15	1	0	0	0	0	1	0	0	0	6629	681	24	4	7486	4	GOLGB1	3	121417022	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	290805	121417022	76605408	566	32216											
SLC15A2	6565	broad.mit.edu	37	chr3	121631823	121631823	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtccatctctacaggtGcatttagtatcaacatggtt	8	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121631823	C	C	121631823	1	2	15	0	1	0	0	0	0	0	0	0	14512	1334	46	4		4	SLC15A2	3	121631823	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	214801	121631823	76390607	567	32217											
PARP9	83666	broad.mit.edu	37	chr3	122278545	122278545	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactgtagtttccagatatGgtggcccacttctaggaatg	11	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122278545	A	A	122278545	1	1	15	0	1	0	0	0	0	0	0	0	11560	1363	47	4		4	PARP9	3	122278545	5'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	646722	122278545	75743885	568	32218											
KALRN	8997	broad.mit.edu	37	chr3	124153414	124153414	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtggggctgagattgccAgggggccattttctgccttg	15	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124153414	C	C	124153414	1	2	15	0	1	0	0	0	0	0	0	0	8045	203	7	5		5	KALRN	3	124153414	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1874869	124153414	73869016	569	32219											
MUC13	56667	broad.mit.edu	37	chr3	124641011	124641011	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgttagaacaaagaatGctttacagaaaggaaagttg	10	4	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124641011	A	A	124641011	1	1	15	0	1	0	0	0	0	0	0	0	10065	1334	46	4		4	MUC13	3	124641011	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	487597	124641011	73381419	570	32220											
SNX4	8723	broad.mit.edu	37	chr3	125223463	125223463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgtaatttctgttacCcaccttgtttcaatgaggta	8	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125223463	A	A	125223463	1	1	15	0	1	0	0	0	0	0	0	0	15018	638	22	2		2	SNX4	3	125223463	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	582452	125223463	72798967	571	32221											
ALDH1L1	10840	broad.mit.edu	37	chr3	125824755	125824755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcattggcccgagacagcaCggcatccaagtccctggaga	13	13	0	2	rs141656827	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125824755	A	A	125824755	3	1	15	1	0	0	0	0	1	0	0	0	494	536	19	3	249	3	ALDH1L1	3	125824755	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	601292	125824755	72197675	572	32222											
CHCHD6	84303	broad.mit.edu	37	chr3	126486081	126486081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccattgtatattatctGtgcggggctggggatagtgt	15	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126486081	T	T	126486081	1	4	15	0	1	0	0	0	0	0	0	0	3351	1392	48	3		3	CHCHD6	3	126486081	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	661326	126486081	71536349	573	32223											
EEFSEC	60678	broad.mit.edu	37	chr3	127983561	127983561	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaggccaaggcactgtgatGacagggaccatcctttcagg	12	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127983561	T	T	127983561	3	4	15	1	0	0	0	0	1	0	0	0	4971	1290	45	3	737	3	EEFSEC	3	127983561	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1497480	127983561	70038869	574	32224											
EEFSEC	60678	broad.mit.edu	37	chr3	128077255	128077255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccggtttagggacaccgtGcagggcacagagagatggca	15	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128077255	T	T	128077255	1	4	15	0	1	0	0	0	0	0	0	0	4971	1334	46	3		3	EEFSEC	3	128077255	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	93694	128077255	69945175	575	32225											
KIAA1257	57501	broad.mit.edu	37	chr3	128695883	128695883	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcactgttcttggaagAagtttcgggctctgcttggt	11	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128695883	T	T	128695883	3	4	15	1	0	0	0	0	1	0	0	0	8288	246	9	5	406	5	KIAA1257	3	128695883	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	618628	128695883	69326547	576	32226											
TRH	7200	broad.mit.edu	37	chr3	129695927	129695927	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaggcccctgtgggccCcagggagcctatggtcaagc	16	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129695927	A	A	129695927	2	1	15	1	0	0	0	0	0	0	0	1	16602	610	22	2		2	TRH	3	129695927	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1000044	129695927	68326503	577	32227											
ATP2C1	27032	broad.mit.edu	37	chr3	130678149	130678149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttggttggctggttactggGaaaagatatcctggaaatgt	14	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130678149	T	T	130678149	3	4	15	1	0	0	0	0	1	0	0	0	1147	1174	41	3	905	3	ATP2C1	3	130678149	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	982222	130678149	67344281	578	32228											
ATP2C1	27032	broad.mit.edu	37	chr3	130686176	130686176	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgtatttttcttaggcGggctgtgtgtgcaatgatgc	13	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130686176	T	T	130686176	2	4	15	1	0	0	0	0	0	0	0	1	1147	1103	39	1		1	ATP2C1	3	130686176	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	8027	130686176	67336254	579	32229											
ATP2C1	27032	broad.mit.edu	37	chr3	130716649	130716649	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaattctgtatatctgatAggattcttagttattttgat	7	3	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130716649	G	G	130716649	1	3	15	0	1	0	0	0	0	0	0	0	1147	435	15	5		5	ATP2C1	3	130716649	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	30473	130716649	67305781	580	32230											
NEK11	79858	broad.mit.edu	37	chr3	130962248	130962248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatccttctaccatacagGgaaaataaacatttctccct	4	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130962248	T	T	130962248	1	4	15	0	1	0	0	0	0	0	0	0	10418	1247	43	2		2	NEK11	3	130962248	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	245599	130962248	67060182	581	32231											
NPHP3	27031	broad.mit.edu	37	chr3	132411691	132411691	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaacaaattaacagtaatCataaagcacctgtataagta	4	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132411691	G	G	132411691	1	3	15	0	1	0	0	0	0	0	0	0	10675	841	29	4		4	NPHP3	3	132411691	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1449443	132411691	65610739	582	32232											
TF	7018	broad.mit.edu	37	chr3	133478117	133478117	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtggagtgttaacagtgtaGggaaaatagagtgtgtatca	14	2	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133478117	C	C	133478117	3	2	15	1	0	0	0	0	1	0	0	0	15908	1000	35	4	1181	4	TF	3	133478117	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1066426	133478117	64544313	583	32233											
SLCO2A1	6578	broad.mit.edu	37	chr3	133667911	133667911	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcctcagaagctcagggcTgggtggaggtgagccccctc	16	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133667911	A	A	133667911	1	1	15	0	1	0	0	0	0	0	0	0	14840	1595	55	5		5	SLCO2A1	3	133667911	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	189794	133667911	64354519	584	32234											
CEP63	80254	broad.mit.edu	37	chr3	134280212	134280212	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatgtcaaaatttgtgtctCttccagtgttccttgcctgt	7	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134280212	T	T	134280212	1	4	15	0	1	0	0	0	0	0	0	0	3287	928	32	4		4	CEP63	3	134280212	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	612301	134280212	63742218	585	32235											
EPHB1	2047	broad.mit.edu	37	chr3	134670882	134670882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgagcctgagaacagcGtggcatgcaagggtaagctt	14	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134670882	T	T	134670882	3	4	15	1	0	0	0	0	1	0	0	0	5216	1145	40	3	803	3	EPHB1	3	134670882	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	390670	134670882	63351548	586	32236											
EPHB1	2047	broad.mit.edu	37	chr3	134670923	134670923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcctctgcttcctgccCatctatggcagggccagatc	11	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134670923	A	A	134670923	1	1	15	0	1	0	0	0	0	0	0	0	5216	609	21	2		2	EPHB1	3	134670923	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	41	134670923	63351507	587	32237											
EPHB1	2047	broad.mit.edu	37	chr3	134851908	134851908	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccggtaagtctggaggcttCtgtgctcctgtttggatgtg	15	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134851908	T	T	134851908	1	4	15	0	1	0	0	0	0	0	0	0	5216	928	32	4		4	EPHB1	3	134851908	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	180985	134851908	63170522	588	32238											
EPHB1	2047	broad.mit.edu	37	chr3	134911468	134911468	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaactgccaggcaagaggGaaatctacgtggccatcaag	12	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134911468	T	T	134911468	4	4	15	1	0	0	0	0	0	1	0	0	5216	1175	41	3	1975	3	EPHB1	3	134911468	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	59560	134911468	63110962	589	32239											
EPHB1	2047	broad.mit.edu	37	chr3	134967080	134967080	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctggatcagggaggctcCatataaaggggataatttgt	13	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134967080	T	T	134967080	1	4	15	0	1	0	0	0	0	0	0	0	5216	609	21	4		4	EPHB1	3	134967080	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	55612	134967080	63055350	590	32240											
STAG1	10274	broad.mit.edu	37	chr3	136183880	136183880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagcaaatgtttattttcCtttctacttttatttaaact	2	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136183880	A	A	136183880	1	1	15	0	1	0	0	0	0	0	0	0	15360	696	24	2		2	STAG1	3	136183880	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1216800	136183880	61838550	591	32241											
A4GNT	51146	broad.mit.edu	37	chr3	137850009	137850009	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaaagaaggcaaacagaaGaggcagctggacttcagggt	14	6	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137850009	T	T	137850009	2	4	15	1	0	0	0	0	0	0	0	1	7	929	33	3		3	A4GNT	3	137850009	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1666129	137850009	60172421	592	32242											
TRIM42	287015	broad.mit.edu	37	chr3	140397213	140397213	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccttacaaagatgagCggaactgccagttctgccac	9	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140397213	A	A	140397213	2	1	15	1	0	0	0	0	0	0	0	1	16641	759	27	3		3	TRIM42	3	140397213	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2547204	140397213	57625217	593	32243											
RASA2	5922	broad.mit.edu	37	chr3	141230941	141230941	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcagattgaagtcatcctAtataaggcttagtatgaagc	8	6	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141230941	T	T	141230941	1	4	15	0	1	0	0	0	0	0	0	0	13169	464	16	5		5	RASA2	3	141230941	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	833728	141230941	56791489	594	32244											
GK5	256356	broad.mit.edu	37	chr3	141932244	141932244	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaaagcaggcacatttcatCcctcttaaccaaacgaaact	5	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141932244	T	T	141932244	1	4	15	0	1	0	0	0	0	0	0	0	6486	870	30	4		4	GK5	3	141932244	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	701303	141932244	56090186	595	32245											
SLC9A9	285195	broad.mit.edu	37	chr3	143214218	143214218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattaaagatatgattctGgaacgtgaacagtgccaggc	11	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143214218	T	T	143214218	3	4	15	1	0	0	0	0	1	0	0	0	14835	1357	47	2	803	2	SLC9A9	3	143214218	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1281974	143214218	54808212	596	32246											
PLOD2	5352	broad.mit.edu	37	chr3	145809634	145809634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattcacaaagagtgcagcCattatcctgtgtccatgaat	8	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145809634	A	A	145809634	3	1	15	1	0	0	0	0	1	0	0	0	12197	594	21	2	1496	2	PLOD2	3	145809634	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2595416	145809634	52212796	597	32247											
PLSCR4	57088	broad.mit.edu	37	chr3	145912942	145912942	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctccaaaaatcatggctTtcatcttcacatccaggtct	5	12	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145912942	A	A	145912942	3	1	15	1	0	0	0	0	1	0	0	0	12207	1841	64	5	83	5	PLSCR4	3	145912942	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	103308	145912942	52109488	598	32248											
ZIC4	84107	broad.mit.edu	37	chr3	147114196	147114196	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggctcctcgtggaggcccGggaacaccgaggggctggag	19	11	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147114196	A	A	147114196	3	1	15	1	0	0	0	0	1	0	0	0	17807	1116	39	4	885	4	ZIC4	3	147114196	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1201254	147114196	50908234	599	32249											
AGTR1	185	broad.mit.edu	37	chr3	148459392	148459392	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgagtcccaaaattcaacCctcccgatagggctgggcct	9	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148459392	T	T	148459392	2	4	15	1	0	0	0	0	0	0	0	1	401	610	22	4		4	AGTR1	3	148459392	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1345196	148459392	49563038	600	32250											
HPS3	84343	broad.mit.edu	37	chr3	148847543	148847543	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaacctgcacccgttcggGtcgcagcaggtggtgccctg	13	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148847543	T	T	148847543	2	4	15	1	0	0	0	0	0	0	0	1	7407	1248	44	3		3	HPS3	3	148847543	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	388151	148847543	49174887	601	32251											
WWTR1	25937	broad.mit.edu	37	chr3	149245562	149245562	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgtaaacaaagatcctaTtatagtctagatcacataat	4	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149245562	C	C	149245562	1	2	15	0	1	0	0	0	0	0	0	0	17544	1508	52	5		5	WWTR1	3	149245562	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	398019	149245562	48776868	602	32252											
MED12L	116931	broad.mit.edu	37	chr3	151067807	151067807	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgaaatgcaaccccacccCtgcagacaagagtttcagaa	7	12	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151067807	T	T	151067807	1	4	15	0	1	0	0	0	0	0	0	0	9522	696	24	4		4	MED12L	3	151067807	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1822245	151067807	46954623	603	32253											
MED12L	116931	broad.mit.edu	37	chr3	151083776	151083776	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgatgtactttgcactgtAgatgtaagttttctttttca	7	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151083776	G	G	151083776	2	3	15	1	0	0	0	0	0	0	0	1	9522	407	15	5		5	MED12L	3	151083776	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	15969	151083776	46938654	604	32254											
P2RY1	5028	broad.mit.edu	37	chr3	152553901	152553901	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagccctgatcttctaCtacttcaataaaacagactg	5	13	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152553901	G	G	152553901	4	3	15	1	0	0	0	0	0	1	0	0	11440	576	20	4	332	4	P2RY1	3	152553901	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1470125	152553901	45468529	605	32255											
GPR149	344758	broad.mit.edu	37	chr3	154145201	154145201	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttaccactgacatttatcCttggactctccatcccctac	3	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154145201	T	T	154145201	1	4	15	0	1	0	0	0	0	0	0	0	6719	696	24	4		4	GPR149	3	154145201	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1591300	154145201	43877229	606	32256											
GPR149	344758	broad.mit.edu	37	chr3	154147120	154147120	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagtaaccggggacctcGtttggccactgcaaaaacat	11	10	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154147120	A	A	154147120	2	1	15	1	0	0	0	0	0	0	0	1	6719	1136	40	4		4	GPR149	3	154147120	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1919	154147120	43875310	607	32257											
KCNAB1	7881	broad.mit.edu	37	chr3	155893839	155893839	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccatcaggtgaccaagaaCatcttagaaggttcttttca	7	9	4	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155893839	T	T	155893839	1	4	15	0	1	0	0	0	0	0	0	0	8079	493	17	4		4	KCNAB1	3	155893839	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1746719	155893839	42128591	608	32258											
KCNAB1	7881	broad.mit.edu	37	chr3	156170725	156170725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtcaaatttcagatgaGgtaagttacctttggcctct	11	7	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156170725	T	T	156170725	3	4	15	1	0	0	0	0	1	0	0	0	8079	1014	35	2	838	2	KCNAB1	3	156170725	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	276886	156170725	41851705	609	32259											
IQCJ	654502	broad.mit.edu	37	chr3	158983078	158983078	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacctggggacaagttgccTggtggaaggaaggtgattct	15	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158983078	A	A	158983078	2	1	15	1	0	0	0	0	0	0	0	1	7882	1567	55	5		5	IQCJ	3	158983078	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	2812353	158983078	39039352	610	32260											
KPNA4	3840	broad.mit.edu	37	chr3	160231984	160231984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcctgtagaacaagagCatttgaatatttctcattaa	6	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160231984	A	A	160231984	1	1	15	0	1	0	0	0	0	0	0	0	8503	725	25	3		3	KPNA4	3	160231984	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1248906	160231984	37790446	611	32261											
NMD3	51068	broad.mit.edu	37	chr3	160968014	160968014	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaatataactatatttttgGtgatgaaatatttaaatgtt	5	1	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160968014	C	C	160968014	1	2	15	0	1	0	0	0	0	0	0	0	10583	1276	44	4		4	NMD3	3	160968014	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	736030	160968014	37054416	612	32262											
SI	6476	broad.mit.edu	37	chr3	164709192	164709192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtaggatgtgaccaccaCggacatgtaggtttattgtg	13	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164709192	T	T	164709192	3	4	15	1	0	0	0	0	1	0	0	0	14410	536	19	4	446	4	SI	3	164709192	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3741178	164709192	33313238	613	32263											
SI	6476	broad.mit.edu	37	chr3	164710132	164710132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtaaccataaatgctGgaccccataagaactgcttg	10	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164710132	T	T	164710132	3	4	15	1	0	0	0	0	1	0	0	0	14410	1348	47	2	616	2	SI	3	164710132	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	940	164710132	33312298	614	32264											
SI	6476	broad.mit.edu	37	chr3	164710186	164710186	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtttttcatcaaagaacCtcgacaaaattatcacaaat	4	8	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164710186	A	A	164710186	5	1	15	1	0	0	0	0	0	0	1	0	14410	695	24	2	670	2	SI	3	164710186	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	54	164710186	33312244	615	32265											
SLITRK3	22865	broad.mit.edu	37	chr3	164906357	164906357	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcacgaggcttgtagatGgggttgttgcacatttgggt	14	7	1	1	rs146211129		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164906357	T	T	164906357	2	4	15	1	0	0	0	0	0	0	0	1	14858	1335	47	2		2	SLITRK3	3	164906357	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	196171	164906357	33116073	616	32266											
ZBBX	79740	broad.mit.edu	37	chr3	167031678	167031678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttggttttaaaatgaaCagcataacaaagcttttata	5	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167031678	A	A	167031678	1	1	15	0	1	0	0	0	0	0	0	0	17643	493	17	3		3	ZBBX	3	167031678	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2125321	167031678	30990752	617	32267											
WDR49	151790	broad.mit.edu	37	chr3	167254667	167254667	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcaatttacccgtaacaaGagtttgtggaggtaaaaacg	10	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167254667	T	T	167254667	3	4	15	1	0	0	0	0	1	0	0	0	17429	942	33	3	1240	3	WDR49	3	167254667	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	222989	167254667	30767763	618	32268											
GOLIM4	27333	broad.mit.edu	37	chr3	167761334	167761334	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctctgcaaagatgaaaacTtgagtagaaatatacattct	8	6	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167761334	A	A	167761334	1	1	15	0	1	0	0	0	0	0	0	0	6630	1624	56	5		5	GOLIM4	3	167761334	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	506667	167761334	30261096	619	32269											
MYNN	55892	broad.mit.edu	37	chr3	169492398	169492398	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagctagtcagtagtcttCacagcaaaagtagatttgta	8	6	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169492398	A	A	169492398	1	1	15	0	1	0	0	0	0	0	0	0	10155	841	29	3		3	MYNN	3	169492398	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1731064	169492398	28530032	620	32270											
SAMD7	344658	broad.mit.edu	37	chr3	169650453	169650453	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagacacaatggaaaaatcTgtcacactttggcttccaga	9	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169650453	A	A	169650453	1	1	15	0	1	0	0	0	0	0	0	0	13935	1595	55	5		5	SAMD7	3	169650453	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	158055	169650453	28371977	621	32271											
SLC7A14	57709	broad.mit.edu	37	chr3	170244607	170244607	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccatgtgccgtggtggtcCcagttccctctagcatggac	11	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170244607	G	G	170244607	3	3	15	1	0	0	0	0	1	0	0	0	14810	623	22	4	2224	4	SLC7A14	3	170244607	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	594154	170244607	27777823	622	32272											
ECT2	1894	broad.mit.edu	37	chr3	172474945	172474945	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgtattaaattgttcacAaaaaggagaggtaagcatat	9	3	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172474945	G	G	172474945	3	3	15	1	0	0	0	0	1	0	0	0	4941	130	5	5	393	5	ECT2	3	172474945	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	2230338	172474945	25547485	623	32273											
NLGN1	22871	broad.mit.edu	37	chr3	173322611	173322611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcaataatgaaattttgGggcctgttattcaatttctt	6	6	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173322611	T	T	173322611	3	4	15	1	0	0	0	0	1	0	0	0	10556	1232	43	2	225	2	NLGN1	3	173322611	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	847666	173322611	24699819	624	32274											
ABCF3	55324	broad.mit.edu	37	chr3	183907380	183907380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctagtcgtctcccacgaCcgcaacttcttgaatgccat	6	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183907380	A	A	183907380	3	1	15	1	0	0	0	0	1	0	0	0	67	506	18	3	1199	3	ABCF3	3	183907380	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	10584769	183907380	14115050	625	32275											
ECE2	9718	broad.mit.edu	37	chr3	183994420	183994420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgacgcctggcacacccaGgagctctgggctgttctgga	13	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183994420	T	T	183994420	1	4	15	0	1	0	0	0	0	0	0	0	4930	1000	35	2		2	ECE2	3	183994420	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	87040	183994420	14028010	626	32276											
PSMD2	5708	broad.mit.edu	37	chr3	184022015	184022015	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttgaaatggtgaatgaatGaccgattctccttttgttct	9	6	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184022015	A	A	184022015	1	1	15	0	1	0	0	0	0	0	0	0	12804	1305	45	4		4	PSMD2	3	184022015	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	27595	184022015	14000415	627	32277											
PSMD2	5708	broad.mit.edu	37	chr3	184024532	184024532	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggttctgctctctcttcaAttgcagggagtggctgttct	12	9	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184024532	G	G	184024532	1	3	15	0	1	0	0	0	0	0	0	0	12804	116	4	5		5	PSMD2	3	184024532	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2517	184024532	13997898	628	32278											
EIF4G1	1981	broad.mit.edu	37	chr3	184038793	184038793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggccaggtaagtaagccGgtgggacggagcttttatgg	16	8	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184038793	T	T	184038793	1	4	15	0	1	0	0	0	0	0	0	0	5078	1131	39	1		1	EIF4G1	3	184038793	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	14261	184038793	13983637	629	32279											
EIF4G1	1981	broad.mit.edu	37	chr3	184045208	184045208	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaaggcagctagcctcacGgaggatcgggaccgtgggcg	17	12	1	0	rs113108196		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184045208	T	T	184045208	2	4	15	1	0	0	0	0	0	0	0	1	5078	1103	39	1		1	EIF4G1	3	184045208	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	6415	184045208	13977222	630	32280											
EIF4G1	1981	broad.mit.edu	37	chr3	184046479	184046479	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacatcccccacgtgtggctCtacctagcggaactggtaac	10	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184046479	T	T	184046479	2	4	15	1	0	0	0	0	0	0	0	1	5078	900	32	4		4	EIF4G1	3	184046479	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1271	184046479	13975951	631	32281											
EIF4G1	1981	broad.mit.edu	37	chr3	184052538	184052538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcggatgttctttgacGcactgtatgacgaggacgtg	14	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184052538	T	T	184052538	3	4	15	1	0	0	0	0	1	0	0	0	5078	1087	38	3	4764	3	EIF4G1	3	184052538	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	6059	184052538	13969892	632	32282											
CHRD	8646	broad.mit.edu	37	chr3	184102866	184102866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagagccaagcagcagGgcacgcctggctttccttgg	14	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184102866	T	T	184102866	3	4	15	1	0	0	0	0	1	0	0	0	3403	1232	43	2	1712	2	CHRD	3	184102866	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	50328	184102866	13919564	633	32283											
CHRD	8646	broad.mit.edu	37	chr3	184106611	184106611	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accttcccagggaggtccctGaagaagctgaaggtcactgt	12	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184106611	A	A	184106611	1	1	15	0	1	0	0	0	0	0	0	0	3403	1305	45	4		4	CHRD	3	184106611	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3745	184106611	13915819	634	32284											
TRA2B	6434	broad.mit.edu	37	chr3	185655553	185655553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcccgaggccgacgggcCtagaaaaagatgcaaggagc	15	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185655553	A	A	185655553	1	1	15	0	1	0	0	0	0	0	0	0	16558	696	24	2		2	TRA2B	3	185655553	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1548942	185655553	12366877	635	32285											
DGKG	1608	broad.mit.edu	37	chr3	186002472	186002472	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggtccaggagaccgttctCatctgaatcatagaggcgaa	11	9	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186002472	T	T	186002472	3	4	15	1	0	0	0	0	1	0	0	0	4509	835	29	4	1880	4	DGKG	3	186002472	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	346919	186002472	12019958	636	32286											
RFC4	5984	broad.mit.edu	37	chr3	186515344	186515344	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagagttctctagctgcTgccaaaatagtggatgtttt	9	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186515344	A	A	186515344	2	1	15	1	0	0	0	0	0	0	0	1	13355	1567	55	5		5	RFC4	3	186515344	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	512872	186515344	11507086	637	32287											
RTP1	132112	broad.mit.edu	37	chr3	186915621	186915621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggccgcctctaggtcCctagctctggggcaccttcc	11	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186915621	A	A	186915621	1	1	15	0	1	0	0	0	0	0	0	0	13844	638	22	2		2	RTP1	3	186915621	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	400277	186915621	11106809	638	32288											
TPRG1	285386	broad.mit.edu	37	chr3	188956442	188956442	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaaacttcactgttttctGtgctaggagagatgtgaagg	11	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188956442	A	A	188956442	1	1	15	0	1	0	0	0	0	0	0	0	16542	1392	48	4		4	TPRG1	3	188956442	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2040821	188956442	9065988	639	32289											
TP63	8626	broad.mit.edu	37	chr3	189587113	189587113	+	Frame_Shift_Del	DEL	C	-	-													ttgcatttttcctccaccagCgtttcgtcagaacacacatg					rs148052765		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	189587113	-	-	189587113	7	5	15	1	0	1	0	1	0	0	0	0	16516	782	27	0	1210	0	TP63	3	189587113	Frame_Shift_Del	DEL	C	TCGA-05-4410-01A-21D-1855-08	630671	189587113	8435317	640	32290											
CCDC50	152137	broad.mit.edu	37	chr3	191075856	191075856	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatctccaggtggctaagcAgctccaagaggaagatctga	12	9	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191075856	G	G	191075856	3	3	15	1	0	0	0	0	1	0	0	0	2848	188	7	5	192	5	CCDC50	3	191075856	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1488743	191075856	6946574	641	32291											
ATP13A5	344905	broad.mit.edu	37	chr3	193029655	193029655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcacttggtatgatttccCactcattgcaaaatggtaac	6	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193029655	A	A	193029655	3	1	15	1	0	0	0	0	1	0	0	0	1131	594	21	2	1303	2	ATP13A5	3	193029655	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1953799	193029655	4992775	642	32292											
LRRC15	131578	broad.mit.edu	37	chr3	194081494	194081494	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttcggaaggccccaggCgtgatgcgcgacagctcatt	14	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194081494	A	A	194081494	2	1	15	1	0	0	0	0	0	0	0	1	9057	755	27	3		3	LRRC15	3	194081494	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1051839	194081494	3940936	643	32293											
ATP13A3	79572	broad.mit.edu	37	chr3	194147764	194147764	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttatatcatatatgttgcaCatattttatatagattttta	3	3	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	194147764	G	G	194147764	1	3	15	0	1	0	0	0	0	0	0	0	1129	493	17	4		4	ATP13A3	3	194147764	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	66270	194147764	3874666	644	32294											
LSG1	55341	broad.mit.edu	37	chr3	194365490	194365490	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaccctacaaagacaacaTgaatgacaacagtgcagcct	6	12	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	194365490	C	C	194365490	1	2	15	0	1	0	0	0	0	0	0	0	9136	1479	51	5		5	LSG1	3	194365490	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	217726	194365490	3656940	645	32295											
LRCH3	84859	broad.mit.edu	37	chr3	197581339	197581339	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagttttgcacaaaacggAgtttcgcatttctgtgttta	9	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197581339	T	T	197581339	1	4	15	0	1	0	0	0	0	0	0	0	9021	319	11	5		5	LRCH3	3	197581339	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	3215849	197581339	441091	646	32296											
ATP5I	521	broad.mit.edu	37	chr4	667086	667086	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctataagagccagtgtcacTcgtaccttctgccaattctc	6	13	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	667086	A	A	667086	1	1	15	0	1	0	0	0	0	0	0	0	1161	1566	54	5		5	ATP5I	4	667086	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08		667086	190487190	647	32297											
TACC3	10460	broad.mit.edu	37	chr4	1742434	1742434	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcaccctccgaggctcacAcccactgcccacctctcctc	4	23	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1742434	T	T	1742434	1	4	15	0	1	0	0	0	0	0	0	0	15622	174	6	5		5	TACC3	4	1742434	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1075348	1742434	189411842	648	32298											
ZFYVE28	57732	broad.mit.edu	37	chr4	2306871	2306871	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcatccatgaagaacacgCgctcctcctcgtcactgcct	7	17	2	2	rs73203327	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2306871	T	T	2306871	3	4	15	1	0	0	0	0	1	0	0	0	17796	768	27	4	1491	4	ZFYVE28	4	2306871	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	564437	2306871	188847405	649	32299											
HTT	3064	broad.mit.edu	37	chr4	3201610	3201610	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctggtgtcagatactGctgcttgtcaaccacaccga	9	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3201610	A	A	3201610	2	1	15	1	0	0	0	0	0	0	0	1	7527	1306	46	4		4	HTT	4	3201610	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	894739	3201610	187952666	650	32300											
ADRA2C	152	broad.mit.edu	37	chr4	3769780	3769780	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggctgggcagaaggggcGgcccggacgggggagctttc	22	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3769780	T	T	3769780	1	4	15	0	1	0	0	0	0	0	0	0	339	1131	39	1		1	ADRA2C	4	3769780	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	568170	3769780	187384496	651	32301											
CRMP1	1400	broad.mit.edu	37	chr4	5844795	5844795	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagtggtgagtgtcagagtCatgcccaagttgaggagtcc	14	8	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5844795	G	G	5844795	1	3	15	0	1	0	0	0	0	0	0	0	3922	841	29	4		4	CRMP1	4	5844795	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2075015	5844795	185309481	652	32302											
TBC1D14	57533	broad.mit.edu	37	chr4	6969231	6969231	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccttgcaaaaatgaccatAttgagtctgaaactggaaat	7	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6969231	T	T	6969231	1	4	15	0	1	0	0	0	0	0	0	0	15722	464	16	5		5	TBC1D14	4	6969231	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1124436	6969231	184185045	653	32303											
SLC2A9	56606	broad.mit.edu	37	chr4	10027569	10027569	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcttcatcttctcctcGgtcctttttactgagcttca	4	13	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10027569	T	T	10027569	2	4	15	1	0	0	0	0	0	0	0	1	14666	1124	39	1		1	SLC2A9	4	10027569	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	3058338	10027569	181126707	654	32304											
CLNK	116449	broad.mit.edu	37	chr4	10559968	10559968	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaacagtaatgcgagaggAtcttagaagcaaaatagatg	10	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10559968	T	T	10559968	1	4	15	0	1	0	0	0	0	0	0	0	3579	348	12	5		5	CLNK	4	10559968	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	532399	10559968	180594308	655	32305											
RAB28	9364	broad.mit.edu	37	chr4	13370268	13370268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttacaatatctgccttcaCcaccctctgtcataaaagaa	4	12	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13370268	A	A	13370268	3	1	15	1	0	0	0	0	1	0	0	0	13024	507	18	3	89	3	RAB28	4	13370268	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2810300	13370268	177784008	656	32306											
BOD1L	259282	broad.mit.edu	37	chr4	13610219	13610219	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaactttccgttctttaagGacttctttaattctggcggc	7	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13610219	A	A	13610219	2	1	15	1	0	0	0	0	0	0	0	1	1489	1161	41	4		4	BOD1L	4	13610219	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	239951	13610219	177544057	657	32307											
NCAPG	64151	broad.mit.edu	37	chr4	17819644	17819644	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatatttgaaatcaaaaggaGatgaaggtgaagaattttta	9	1	1	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17819644	T	T	17819644	3	4	15	1	0	0	0	0	1	0	0	0	10302	942	33	3	1077	3	NCAPG	4	17819644	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4209425	17819644	173334632	658	32308											
SLIT2	9353	broad.mit.edu	37	chr4	20541057	20541057	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataacaatgtcctttttttcCcctcaggatgttgagaagca	7	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20541057	T	T	20541057	1	4	15	0	1	0	0	0	0	0	0	0	14854	638	22	4		4	SLIT2	4	20541057	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2721413	20541057	170613219	659	32309											
SLIT2	9353	broad.mit.edu	37	chr4	20543209	20543209	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaagaaatacccatccagGatgtggccattcaggacttc	9	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20543209	A	A	20543209	3	1	15	1	0	0	0	0	1	0	0	0	14854	1174	41	4	2188	4	SLIT2	4	20543209	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2152	20543209	170611067	660	32310											
KCNIP4	80333	broad.mit.edu	37	chr4	21305381	21305381	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acattcacctaagacattttCattgcaaaacagagaatttt	4	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21305381	A	A	21305381	1	1	15	0	1	0	0	0	0	0	0	0	8112	841	29	3		3	KCNIP4	4	21305381	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	762172	21305381	169848895	661	32311											
CCDC149	91050	broad.mit.edu	37	chr4	24838915	24838915	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcccactcaggatatggttCagctcctggttgagcctctc	10	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24838915	A	A	24838915	2	1	15	1	0	0	0	0	0	0	0	1	2809	813	29	3		3	CCDC149	4	24838915	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3533534	24838915	166315361	662	32312											
SEL1L3	23231	broad.mit.edu	37	chr4	25780789	25780789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcccttccatgtgtccacCttgcgcagccttatggaaat	9	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25780789	A	A	25780789	3	1	15	1	0	0	0	0	1	0	0	0	14125	681	24	2	940	2	SEL1L3	4	25780789	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	941874	25780789	165373487	663	32313											
CCKAR	886	broad.mit.edu	37	chr4	26483736	26483736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggcctggtcttttgcaGgtaacacccatcgctgtcct	12	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26483736	T	T	26483736	3	4	15	1	0	0	0	0	1	0	0	0	2908	991	35	2	479	2	CCKAR	4	26483736	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	702947	26483736	164670540	664	32314											
TLR10	81793	broad.mit.edu	37	chr4	38774993	38774993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcagtttatgatacctgGtgggaatgcaatagaatgga	11	5	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38774993	T	T	38774993	3	4	15	1	0	0	0	0	1	0	0	0	16073	1261	44	3	220	3	TLR10	4	38774993	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	12291257	38774993	152379283	665	32315											
GABRG1	2565	broad.mit.edu	37	chr4	46066629	46066629	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttaaaacaagattttgtCatatgataatagattgtgac	6	3	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46066629	A	A	46066629	1	1	15	0	1	0	0	0	0	0	0	0	6231	841	29	3		3	GABRG1	4	46066629	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7291636	46066629	145087647	666	32316											
GABRA2	2555	broad.mit.edu	37	chr4	46314444	46314444	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaatacttgacagctagaTtggctggttgtttaatacat	9	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46314444	A	A	46314444	1	1	15	0	1	0	0	0	0	0	0	0	6221	1508	52	5		5	GABRA2	4	46314444	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	247815	46314444	144839832	667	32317											
GABRB1	2560	broad.mit.edu	37	chr4	47405711	47405711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaactatgatgcatctgCagccagagtcgcactaggta	10	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47405711	A	A	47405711	3	1	15	1	0	0	0	0	1	0	0	0	6226	710	25	3	844	3	GABRB1	4	47405711	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1091267	47405711	143748565	668	32318											
CORIN	10699	broad.mit.edu	37	chr4	47663854	47663854	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagactcacagcgttcttTagagtgttcacacaatgccc	7	12	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47663854	C	C	47663854	3	2	15	1	0	0	0	0	1	0	0	0	3784	1763	61	5	1563	5	CORIN	4	47663854	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	258143	47663854	143490422	669	32319											
CORIN	10699	broad.mit.edu	37	chr4	47667000	47667000	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactaagtcttcaccccttgGttctctctgaggcaaaataa	6	11	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47667000	C	C	47667000	1	2	15	0	1	0	0	0	0	0	0	0	3784	1276	44	4		4	CORIN	4	47667000	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3146	47667000	143487276	670	32320											
CWH43	80157	broad.mit.edu	37	chr4	48996897	48996897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctggaggaagcaatgcCtcctttgtcagacagctagg	12	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48996897	A	A	48996897	1	1	15	0	1	0	0	0	0	0	0	0	4106	696	24	2		2	CWH43	4	48996897	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1329897	48996897	142157379	671	32321											
USP46	64854	broad.mit.edu	37	chr4	53494232	53494232	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacgtcagcaagttttccttCttcttttgctgggccttgta	8	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53494232	A	A	53494232	3	1	15	1	0	0	0	0	1	0	0	0	17204	912	32	3	912	3	USP46	4	53494232	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4497335	53494232	137660044	672	32322											
EXOC1	55763	broad.mit.edu	37	chr4	56726659	56726659	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctacaaaaggcagattgcAtgggcccttcgagatcttgc	10	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56726659	G	G	56726659	2	3	15	1	0	0	0	0	0	0	0	1	5343	204	8	5		5	EXOC1	4	56726659	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	3232427	56726659	134427617	673	32323											
KIAA1211	57482	broad.mit.edu	37	chr4	57193889	57193889	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccccggatgctgccccCgtgtcaacagaaccagcctg	9	18	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57193889	T	T	57193889	2	4	15	1	0	0	0	0	0	0	0	1	8285	639	23	4		4	KIAA1211	4	57193889	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	467230	57193889	133960387	674	32324											
LPHN3	23284	broad.mit.edu	37	chr4	62679563	62679563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagtttcatacatttctcCgccaattcaccttgactctg	4	13	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62679563	T	T	62679563	3	4	15	1	0	0	0	0	1	0	0	0	9004	652	23	4	1254	4	LPHN3	4	62679563	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5485674	62679563	128474713	675	32325											
LPHN3	23284	broad.mit.edu	37	chr4	62897363	62897363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttaaaataaaaatggCatacatttcatgatagcaaa	4	4	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62897363	A	A	62897363	1	1	15	0	1	0	0	0	0	0	0	0	9004	725	25	3		3	LPHN3	4	62897363	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	217800	62897363	128256913	676	32326											
STAP1	26228	broad.mit.edu	37	chr4	68443021	68443021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattctttttttttttcaaCaaatatctgctgaacaccct	3	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68443021	A	A	68443021	1	1	15	0	1	0	0	0	0	0	0	0	15370	493	17	3		3	STAP1	4	68443021	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5545658	68443021	122711255	677	32327											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68708237	68708237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcaagtatgccacattGtatctatacttaaatatttt	4	6	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68708237	T	T	68708237	1	4	15	0	1	0	0	0	0	0	0	0	16364	1392	48	3		3	TMPRSS11D	4	68708237	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	265216	68708237	122446039	678	32328											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68829211	68829211	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtattagaagtctacggctCaaagaaataaggaaacaaat	8	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68829211	A	A	68829211	1	1	15	0	1	0	0	0	0	0	0	0	16362	841	29	3		3	TMPRSS11A	4	68829211	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	120974	68829211	122325065	679	32329											
UGT2B11	10720	broad.mit.edu	37	chr4	70073982	70073982	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggatgtaaagagttcactCtactcttaatattctttcta	5	7	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70073982	A	A	70073982	1	1	15	0	1	0	0	0	0	0	0	0	17083	928	32	3		3	UGT2B11	4	70073982	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1244771	70073982	121080294	680	32330											
UGT2B28	54490	broad.mit.edu	37	chr4	70156342	70156342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagcttttataactcatGgtggagccaatggcatctat	9	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70156342	T	T	70156342	3	4	15	1	0	0	0	0	1	0	0	0	17086	1348	47	2	1141	2	UGT2B28	4	70156342	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	82360	70156342	120997934	681	32331											
UGT2B28	54490	broad.mit.edu	37	chr4	70156572	70156572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaggtggtatttgtagataGcttctcttttcaatagtgag	10	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70156572	A	A	70156572	1	1	15	0	1	0	0	0	0	0	0	0	17086	986	34	4		4	UGT2B28	4	70156572	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	230	70156572	120997704	682	32332											
UGT2B28	54490	broad.mit.edu	37	chr4	70160200	70160200	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagacttgatacatacagGccagttaacttactttcagt	6	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70160200	T	T	70160200	1	4	15	0	1	0	0	0	0	0	0	0	17086	1218	42	3		3	UGT2B28	4	70160200	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3628	70160200	120994076	683	32333											
UGT2B4	7363	broad.mit.edu	37	chr4	70346427	70346427	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattttgtgatgatgaatatCacagttgccacacaggccag	9	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346427	A	A	70346427	2	1	15	1	0	0	0	0	0	0	0	1	17087	813	29	3		3	UGT2B4	4	70346427	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	186227	70346427	120807849	684	32334											
UGT2B4	7363	broad.mit.edu	37	chr4	70346556	70346556	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgacaaattcaatccagaaGactgctcgatcaaggggctt	9	9	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70346556	T	T	70346556	2	4	15	1	0	0	0	0	0	0	0	1	17087	929	33	3		3	UGT2B4	4	70346556	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	129	70346556	120807720	685	32335											
UGT2B4	7363	broad.mit.edu	37	chr4	70346634	70346634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattctctttatatctaaaCgataagcagaaaagtatcaa	5	7	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346634	A	A	70346634	1	1	15	0	1	0	0	0	0	0	0	0	17087	551	19	3		3	UGT2B4	4	70346634	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	78	70346634	120807642	686	32336											
UGT2A1	10941	broad.mit.edu	37	chr4	70465104	70465104	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagtctcacataacgtagTgggtcttcctggagaaaatg	10	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70465104	C	C	70465104	3	2	15	1	0	0	0	0	1	0	0	0	17079	1696	59	5	879	5	UGT2A1	4	70465104	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	118470	70465104	120689172	687	32337											
ODAM	54959	broad.mit.edu	37	chr4	71066320	71066320	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacagtatgaggagcaggTactgcaaatgttttatttta	10	5	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71066320	C	C	71066320	5	2	15	1	0	0	0	0	0	0	1	0	10919	1652	57	5	552	5	ODAM	4	71066320	Splice_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	601216	71066320	120087956	688	32338											
NPFFR2	10886	broad.mit.edu	37	chr4	72897709	72897709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggaggcggggagggagCgcagagcactcagcgtccag	18	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72897709	A	A	72897709	3	1	15	1	0	0	0	0	1	0	0	0	10673	768	27	3	93	3	NPFFR2	4	72897709	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1831389	72897709	118256567	689	32339											
NPFFR2	10886	broad.mit.edu	37	chr4	72994430	72994430	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaactactatcttcaccAgcctcaagtggcagcaatct	7	12	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72994430	T	T	72994430	3	4	15	1	0	0	0	0	1	0	0	0	10673	188	7	5	440	5	NPFFR2	4	72994430	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	96721	72994430	118159846	690	32340											
ANKRD17	26057	broad.mit.edu	37	chr4	73956695	73956695	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtcgaaggtagctggacaGaagagggaacactgtgaggt	17	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73956695	A	A	73956695	3	1	15	1	0	0	0	0	1	0	0	0	646	942	33	4	1185	4	ANKRD17	4	73956695	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	962265	73956695	117197581	691	32341											
PARM1	25849	broad.mit.edu	37	chr4	75937772	75937772	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctccccatccaacggcactCacaacaactcggtgctccca	5	20	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75937772	T	T	75937772	3	4	15	1	0	0	0	0	1	0	0	0	11546	826	29	4	187	4	PARM1	4	75937772	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1981077	75937772	115216504	692	32342											
USO1	8615	broad.mit.edu	37	chr4	76720768	76720768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttctaccaatttatctGttgcagggaagcaaaataca	7	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76720768	T	T	76720768	1	4	15	0	1	0	0	0	0	0	0	0	17165	1392	48	3		3	USO1	4	76720768	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	782996	76720768	114433508	693	32343											
CXCL9	4283	broad.mit.edu	37	chr4	76927368	76927368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttcaaggattgtaggtGgatagtcccttggttggtgc	14	6	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76927368	T	T	76927368	3	4	15	1	0	0	0	0	1	0	0	0	4122	1348	47	2	265	2	CXCL9	4	76927368	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	206600	76927368	114226908	694	32344											
FRAS1	80144	broad.mit.edu	37	chr4	79204011	79204011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggcccttgcaaggtgtGtgagtgccgaggggctcagg	18	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79204011	T	T	79204011	3	4	15	1	0	0	0	0	1	0	0	0	6102	1377	48	3	1191	3	FRAS1	4	79204011	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2276643	79204011	111950265	695	32345											
NAA11	84779	broad.mit.edu	37	chr4	80246593	80246593	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgagagatcccgcttcaTagcataagcatcttccccat	7	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80246593	A	A	80246593	3	1	15	1	0	0	0	0	1	0	0	0	10211	1406	49	5	254	5	NAA11	4	80246593	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1042582	80246593	110907683	696	32346											
FGF5	2250	broad.mit.edu	37	chr4	81188290	81188290	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttccatctgcagatctaCccggatggcaaagtcaatgg	11	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81188290	A	A	81188290	4	1	15	1	0	0	0	0	0	1	0	0	5912	518	18	3	314	3	FGF5	4	81188290	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	941697	81188290	109965986	697	32347											
HNRPDL	9987	broad.mit.edu	37	chr4	83347646	83347646	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatatccctgtccatatcCatagttcccatagttatacc	4	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83347646	A	A	83347646	4	1	15	1	0	0	0	0	0	1	0	0	7343	603	21	2	108	2	HNRPDL	4	83347646	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2159356	83347646	107806630	698	32348											
TMEM150C	441027	broad.mit.edu	37	chr4	83416289	83416289	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatactggcagacatcatCttctttagagacactgaaaa	6	9	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83416289	A	A	83416289	1	1	15	0	1	0	0	0	0	0	0	0	16192	928	32	3		3	TMEM150C	4	83416289	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	68643	83416289	107737987	699	32349											
SEC31A	22872	broad.mit.edu	37	chr4	83748691	83748691	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgacagtggtactggagctGaaggctgttgctgcagcatt	14	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83748691	A	A	83748691	3	1	15	1	0	0	0	0	1	0	0	0	14111	1294	45	4	556	4	SEC31A	4	83748691	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	332402	83748691	107405585	700	32350											
COPS4	51138	broad.mit.edu	37	chr4	83989718	83989718	+	Intron	DEL	A	-	-													gtcataatgaaatagcagtgAactgttatatttgtgattaa							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83989718	-	-	83989718	6	5	15	0	1	1	0	1	0	0	0	0	3767	261	9	0		0	COPS4	4	83989718	Intron	DEL	A	TCGA-05-4410-01A-21D-1855-08	241027	83989718	107164558	701	32351											
WDFY3	23001	broad.mit.edu	37	chr4	85645515	85645515	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatagttgctcaaatttttgTatgaattcaaatacaagaat	5	4	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85645515	A	A	85645515	1	1	15	0	1	0	0	0	0	0	0	0	17397	1653	57	5		5	WDFY3	4	85645515	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1655797	85645515	105508761	702	32352											
PTPN13	5783	broad.mit.edu	37	chr4	87643512	87643512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagacacaatcaaagcGtccatgcttgacatcaccag	8	13	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87643512	T	T	87643512	2	4	15	1	0	0	0	0	0	0	0	1	12888	1132	40	3		3	PTPN13	4	87643512	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1997997	87643512	103510764	703	32353											
DMP1	1758	broad.mit.edu	37	chr4	88583892	88583892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgactctcaagaagacaGcaaggagaatctgtcccagg	13	9	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88583892	T	T	88583892	3	4	15	1	0	0	0	0	1	0	0	0	4623	971	34	3	980	3	DMP1	4	88583892	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	940380	88583892	102570384	704	32354											
DMP1	1758	broad.mit.edu	37	chr4	88584284	88584284	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaaagccattctgaggaaGacgacagtgactctcaagac	11	9	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88584284	T	T	88584284	3	4	15	1	0	0	0	0	1	0	0	0	4623	942	33	3	1372	3	DMP1	4	88584284	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	392	88584284	102569992	705	32355											
PKD2	5311	broad.mit.edu	37	chr4	88959346	88959346	+	Intron	DEL	G	-	-													ttatgcaaacgatgcaggcaGgggcaagacagcggctgagc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88959346	-	-	88959346	6	5	15	0	1	1	0	1	0	0	0	0	12061	1015	35	0		0	PKD2	4	88959346	Intron	DEL	G	TCGA-05-4410-01A-21D-1855-08	375062	88959346	102194930	706	32356											
PKD2	5311	broad.mit.edu	37	chr4	88989119	88989119	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagtttccctcgaagcctgGatgactctgaggaggatgac	13	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88989119	A	A	88989119	3	1	15	1	0	0	0	0	1	0	0	0	12061	1174	41	4	2478	4	PKD2	4	88989119	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	29773	88989119	102165157	707	32357											
MMRN1	22915	broad.mit.edu	37	chr4	90856532	90856532	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaatgtttgaagatttGcacattcaagaaagcaagat	8	6	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90856532	A	A	90856532	2	1	15	1	0	0	0	0	0	0	0	1	9764	1310	46	4		4	MMRN1	4	90856532	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1867413	90856532	100297744	708	32358											
FAM190A	401145	broad.mit.edu	37	chr4	91549144	91549144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctaagcatgctgcactGtaatttttgttctttttttt	6	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91549144	T	T	91549144	1	4	15	0	1	0	0	0	0	0	0	0	5568	1392	48	3		3	FAM190A	4	91549144	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	692612	91549144	99605132	709	32359											
GRID2	2895	broad.mit.edu	37	chr4	93511213	93511213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaacacataagtctccttGtcatatttccagaggggatg	8	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93511213	T	T	93511213	1	4	15	0	1	0	0	0	0	0	0	0	6838	1392	48	3		3	GRID2	4	93511213	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1962069	93511213	97643063	710	32360											
GRID2	2895	broad.mit.edu	37	chr4	94344163	94344163	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcatacttaaaggttcaaTtatttgtctcatacctaaag	4	8	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94344163	C	C	94344163	1	2	15	0	1	0	0	0	0	0	0	0	6838	1508	52	5		5	GRID2	4	94344163	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	832950	94344163	96810113	711	32361											
GRID2	2895	broad.mit.edu	37	chr4	94377139	94377139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaaggtaaggagcaaaaGtacattctagtatttaaaaa	7	5	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94377139	T	T	94377139	1	4	15	0	1	0	0	0	0	0	0	0	6838	1044	36	3		3	GRID2	4	94377139	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	32976	94377139	96777137	712	32362											
PDHA2	5161	broad.mit.edu	37	chr4	96762029	96762029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccctgattactacaagaGgggcaattttatccctgggc	10	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96762029	T	T	96762029	3	4	15	1	0	0	0	0	1	0	0	0	11759	1000	35	2	730	2	PDHA2	4	96762029	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2384890	96762029	94392247	713	32363											
ADH6	130	broad.mit.edu	37	chr4	100134761	100134761	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaccaggtgctaattcctAcctggtttcactgtgcttac	7	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100134761	G	G	100134761	5	3	15	1	0	0	0	0	0	0	1	0	312	405	14	5	895	5	ADH6	4	100134761	Splice_Site	SNP	A	TCGA-05-4410-01A-21D-1855-08	3372732	100134761	91019515	714	32364											
ADH1C	126	broad.mit.edu	37	chr4	100264205	100264205	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacagcacaggtagaccctGgggtgacctatgttttcaga	11	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100264205	A	A	100264205	3	1	15	1	0	0	0	0	1	0	0	0	309	1348	47	4	568	4	ADH1C	4	100264205	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	129444	100264205	90890071	715	32365											
RG9MTD2	93587	broad.mit.edu	37	chr4	100470252	100470252	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaccaggtaacattagtgtGgcagagagttcactgtagat	11	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100470252	C	C	100470252	3	2	15	1	0	0	0	0	1	0	0	0	13380	1348	47	4	10	4	RG9MTD2	4	100470252	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	206047	100470252	90684024	716	32366											
MTTP	4547	broad.mit.edu	37	chr4	100532334	100532334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttctgaaggaaatggtcGctcacaattatgaccgtttc	10	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100532334	T	T	100532334	3	4	15	1	0	0	0	0	1	0	0	0	10058	1087	38	3	1854	3	MTTP	4	100532334	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	62082	100532334	90621942	717	32367											
PPP3CA	5530	broad.mit.edu	37	chr4	102251587	102251587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatactacatacatttagCtgataaagcaacagccaccc	4	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102251587	A	A	102251587	1	1	15	0	1	0	0	0	0	0	0	0	12498	812	28	3		3	PPP3CA	4	102251587	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1719253	102251587	88902689	718	32368											
SLC39A8	64116	broad.mit.edu	37	chr4	103188931	103188931	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacaaggtcttcattttagTgcatcagaaggattttaaga	8	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103188931	A	A	103188931	1	1	15	0	1	0	0	0	0	0	0	0	14738	1711	59	5		5	SLC39A8	4	103188931	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	937344	103188931	87965345	719	32369											
MANBA	4126	broad.mit.edu	37	chr4	103595107	103595107	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactcggtcctggaatgaatCtgctgggatccagtttgagc	12	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103595107	A	A	103595107	3	1	15	1	0	0	0	0	1	0	0	0	9311	913	32	3	1598	3	MANBA	4	103595107	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	406176	103595107	87559169	720	32370											
NHEDC2	133308	broad.mit.edu	37	chr4	103964408	103964408	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggaaagccaacttaatctCattagaaaagagtcatgagc	8	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103964408	G	G	103964408	1	3	15	0	1	0	0	0	0	0	0	0	10496	841	29	4		4	NHEDC2	4	103964408	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	369301	103964408	87189868	721	32371											
COL25A1	84570	broad.mit.edu	37	chr4	109738569	109738569	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaccttttgccaacagccaGgcatgggtaagccatctggc	10	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109738569	C	C	109738569	3	2	15	1	0	0	0	0	1	0	0	0	3716	1000	35	4	26	4	COL25A1	4	109738569	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5774161	109738569	81415707	722	32372											
EGF	1950	broad.mit.edu	37	chr4	110915769	110915769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactattgtcccttctagtaGttcttctgtcactaaaagat	5	9	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110915769	T	T	110915769	1	4	15	0	1	0	0	0	0	0	0	0	5002	1044	36	3		3	EGF	4	110915769	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1177200	110915769	80238507	723	32373											
ENPEP	2028	broad.mit.edu	37	chr4	111441486	111441486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacgctttttgttggaccCaagagctaacccttctcagc	8	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111441486	A	A	111441486	3	1	15	1	0	0	0	0	1	0	0	0	5170	594	21	2	1729	2	ENPEP	4	111441486	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	525717	111441486	79712790	724	32374											
PITX2	5308	broad.mit.edu	37	chr4	111554147	111554147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccagtttgcggcagttgGtctccattccccgttatctg	9	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111554147	T	T	111554147	3	4	15	1	0	0	0	0	1	0	0	0	12050	1261	44	3	1170	3	PITX2	4	111554147	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	112661	111554147	79600129	725	32375											
ANK2	287	broad.mit.edu	37	chr4	114257903	114257903	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatggttttgggggagaTgcaccaaccttaagattact	11	6	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114257903	C	C	114257903	2	2	15	1	0	0	0	0	0	0	0	1	621	1461	51	5		5	ANK2	4	114257903	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	2703756	114257903	76896373	726	32376											
ANK2	287	broad.mit.edu	37	chr4	114277294	114277294	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaagtggcctctgtgcggtCccggctactccgagaccctg	14	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114277294	G	G	114277294	3	3	15	1	0	0	0	0	1	0	0	0	621	855	30	4	7735	4	ANK2	4	114277294	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	19391	114277294	76876982	727	32377											
NDST4	64579	broad.mit.edu	37	chr4	115767068	115767068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgcggctcgtcttggagCttcttccgaatggaagtaat	12	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115767068	A	A	115767068	3	1	15	1	0	0	0	0	1	0	0	0	10353	797	28	3	612	3	NDST4	4	115767068	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1489774	115767068	75387208	728	32378											
NDST4	64579	broad.mit.edu	37	chr4	115997603	115997603	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgcagcaaaggagattgaGggttaacaaaacagtccttt	10	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115997603	A	A	115997603	3	1	15	1	0	0	0	0	1	0	0	0	10353	1000	35	4	2080	4	NDST4	4	115997603	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	230535	115997603	75156673	729	32379											
TRAM1L1	133022	broad.mit.edu	37	chr4	118006189	118006189	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacactaaactgaccagactCgttaaacttgttttgtttcg	6	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118006189	G	G	118006189	3	3	15	1	0	0	0	0	1	0	0	0	16576	893	31	4	752	4	TRAM1L1	4	118006189	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2008586	118006189	73148087	730	32380											
NDST3	9348	broad.mit.edu	37	chr4	119114991	119114991	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaagaggccagttgaagggCctgtgccttctgtgtttcct	13	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119114991	T	T	119114991	1	4	15	0	1	0	0	0	0	0	0	0	10352	754	26	4		4	NDST3	4	119114991	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1108802	119114991	72039285	731	32381											
PRSS12	8492	broad.mit.edu	37	chr4	119253021	119253021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgatggggaacgttgggCctgtgcaatgtgaagttaaa	15	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119253021	A	A	119253021	3	1	15	1	0	0	0	0	1	0	0	0	12721	753	26	3	1846	3	PRSS12	4	119253021	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	138030	119253021	71901255	732	32382											
FAT4	79633	broad.mit.edu	37	chr4	126329538	126329538	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttggtctctttctatatGttctcttagtaatacttctt	4	7	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126329538	C	C	126329538	1	2	15	0	1	0	0	0	0	0	0	0	5749	1392	48	4		4	FAT4	4	126329538	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	7076517	126329538	64824738	733	32383											
FAT4	79633	broad.mit.edu	37	chr4	126336493	126336493	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattatactctaacagtggtGgctacagacaaaggtcaacc	8	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126336493	T	T	126336493	2	4	15	1	0	0	0	0	0	0	0	1	5749	1335	47	2		2	FAT4	4	126336493	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	6955	126336493	64817783	734	32384											
FAT4	79633	broad.mit.edu	37	chr4	126367447	126367447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttctgctttctgctttaGttataggatcatcggtggaa	9	6	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126367447	T	T	126367447	1	4	15	0	1	0	0	0	0	0	0	0	5749	1044	36	3		3	FAT4	4	126367447	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	30954	126367447	64786829	735	32385											
FAT4	79633	broad.mit.edu	37	chr4	126372972	126372972	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttccacaggaactgtgCatatcacagttatagaccaa	7	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126372972	T	T	126372972	3	4	15	1	0	0	0	0	1	0	0	0	5749	710	25	4	10835	4	FAT4	4	126372972	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5525	126372972	64781304	736	32386											
FAT4	79633	broad.mit.edu	37	chr4	126412741	126412741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacactgcccatgaagctaGggcagcaagcagggactttc	11	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126412741	T	T	126412741	3	4	15	1	0	0	0	0	1	0	0	0	5749	1000	35	2	14830	2	FAT4	4	126412741	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	39769	126412741	64741535	737	32387											
SLC25A31	83447	broad.mit.edu	37	chr4	128694753	128694753	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagagtaaattaagaaataCatggatttaacttgttaaac	8	3	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128694753	T	T	128694753	1	4	15	0	1	0	0	0	0	0	0	0	14609	493	17	4		4	SLC25A31	4	128694753	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	2282012	128694753	62459523	738	32388											
LARP1B	55132	broad.mit.edu	37	chr4	128990585	128990585	+	Intron	SNP	G	T	T													gtgctttcggccaccatggcGaacacgaatcctatatataa							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128990585	T	T	128990585	1	4	15	0	1	0	0	0	0	0	0	0	8701	1073	37	3		3	LARP1B	4	128990585	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	295832	128990585	62163691	739	32389	189	2									
LARP1B	55132	broad.mit.edu	37	chr4	128990591	128990591	+	Intron	SNP	G	T	T													tcggccaccatggcgaacacGaatcctatatataacataaa							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128990591	T	T	128990591	1	4	15	0	1	0	0	0	0	0	0	0	8701	1073	37	3		3	LARP1B	4	128990591	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6	128990591	62163685	740	32390	189	2									
PCDH10	57575	broad.mit.edu	37	chr4	134073017	134073017	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgacaacgcccctgccatCgtggcgcctctaccagggcg	11	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134073017	A	A	134073017	2	1	15	1	0	0	0	0	0	0	0	1	11601	874	31	3		3	PCDH10	4	134073017	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	5082426	134073017	57081259	741	32391											
PCDH10	57575	broad.mit.edu	37	chr4	134076163	134076163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcatgatgccaccaacCgtgcccagtcagctggtaag	11	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134076163	A	A	134076163	3	1	15	1	0	0	0	0	1	0	0	0	11601	652	23	1	2852	1	PCDH10	4	134076163	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3146	134076163	57078113	742	32392											
PCDH18	54510	broad.mit.edu	37	chr4	138449939	138449939	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtcttggctgatattgCccctggtgaagcattgaaag	12	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138449939	A	A	138449939	2	1	15	1	0	0	0	0	0	0	0	1	11607	726	26	3		3	PCDH18	4	138449939	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	4373776	138449939	52704337	743	32393											
PCDH18	54510	broad.mit.edu	37	chr4	138451090	138451090	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacacctagttgcaaatagcAccataataaccagcaacact	4	12	0	0	rs143055456	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138451090	G	G	138451090	3	3	15	1	0	0	0	0	1	0	0	0	11607	159	6	5	1270	5	PCDH18	4	138451090	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1151	138451090	52703186	744	32394											
OTUD4	54726	broad.mit.edu	37	chr4	146065662	146065662	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaacaaattctgtaattaatCtcactcttcatacttctaaa	2	9	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146065662	T	T	146065662	1	4	15	0	1	0	0	0	0	0	0	0	11408	928	32	4		4	OTUD4	4	146065662	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7614572	146065662	45088614	745	32395											
PRSS48	345062	broad.mit.edu	37	chr4	152200230	152200230	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccacctctcactgaccaggGaacatccacagataaagctg	7	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152200230	A	A	152200230	1	1	15	0	1	0	0	0	0	0	0	0	12736	1189	41	4		4	PRSS48	4	152200230	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6134568	152200230	38954046	746	32396											
ACCN5	51802	broad.mit.edu	37	chr4	156758099	156758099	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtttatcatttcactttcAatattaaaaaaaggtggtta	5	4	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156758099	T	T	156758099	1	4	15	0	1	0	0	0	0	0	0	0	132	145	5	5		5	ACCN5	4	156758099	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	4557869	156758099	34396177	747	32397											
GRIA2	2891	broad.mit.edu	37	chr4	158142990	158142990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattcatgcctttcgggtGctgcacgcggaaggccagcg	13	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158142990	T	T	158142990	1	4	15	0	1	0	0	0	0	0	0	0	6834	1334	46	3		3	GRIA2	4	158142990	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1384891	158142990	33011286	748	32398											
RXFP1	59350	broad.mit.edu	37	chr4	159568212	159568212	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattctcatttggattactGgttttatagtggctttcatt	8	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159568212	A	A	159568212	3	1	15	1	0	0	0	0	1	0	0	0	13870	1348	47	4	1677	4	RXFP1	4	159568212	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1425222	159568212	31586064	749	32399											
FSTL5	56884	broad.mit.edu	37	chr4	162402417	162402417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtttcatactttactaCtttcagcatcaaatgttaaa	3	7	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162402417	A	A	162402417	1	1	15	0	1	0	0	0	0	0	0	0	6140	580	20	3		3	FSTL5	4	162402417	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2834205	162402417	28751859	750	32400											
FSTL5	56884	broad.mit.edu	37	chr4	163032464	163032464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgataggatttaaggcCatatcctccttctttggttg	10	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163032464	A	A	163032464	3	1	15	1	0	0	0	0	1	0	0	0	6140	594	21	2	2518	2	FSTL5	4	163032464	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	630047	163032464	28121812	751	32401											
NAF1	92345	broad.mit.edu	37	chr4	164061309	164061309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtaagaaattacatcaCtgagaattattcttaaaata	4	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164061309	A	A	164061309	1	1	15	0	1	0	0	0	0	0	0	0	10234	580	20	3		3	NAF1	4	164061309	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1028845	164061309	27092967	752	32402											
CPE	1363	broad.mit.edu	37	chr4	166385731	166385731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggctttgagaaggcagCgtctcaggtgagtgccaggc	16	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166385731	A	A	166385731	3	1	15	1	0	0	0	0	1	0	0	0	3831	768	27	3	503	3	CPE	4	166385731	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2324422	166385731	24768545	753	32403											
CPE	1363	broad.mit.edu	37	chr4	166414461	166414461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctctacgttatgtaCaagagcataattactaatta	8	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166414461	A	A	166414461	1	1	15	0	1	0	0	0	0	0	0	0	3831	493	17	3		3	CPE	4	166414461	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	28730	166414461	24739815	754	32404											
DDX60	55601	broad.mit.edu	37	chr4	169182257	169182257	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttgggtttttttaaaatAgtcctatgaaagtacattat	6	3	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169182257	T	T	169182257	1	4	15	0	1	0	0	0	0	0	0	0	4411	435	15	5		5	DDX60	4	169182257	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2767796	169182257	21972019	755	32405											
DDX60L	91351	broad.mit.edu	37	chr4	169322029	169322029	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttcatctattgcaaagaCataactatgacattcagtgt	5	8	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169322029	T	T	169322029	3	4	15	1	0	0	0	0	1	0	0	0	4412	478	17	4	1733	4	DDX60L	4	169322029	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	139772	169322029	21832247	756	32406											
HAND2	9464	broad.mit.edu	37	chr4	174448523	174448523	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactgtgcttttcaagatttCgttctggacagaggaaaggc	11	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174448523	T	T	174448523	3	4	15	1	0	0	0	0	1	0	0	0	7016	893	31	4	98	4	HAND2	4	174448523	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5126494	174448523	16705753	757	32407											
FBXO8	26269	broad.mit.edu	37	chr4	175158774	175158774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaaaagaaacagttcAaattattagttggtttacaa	7	3	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175158774	T	T	175158774	1	4	15	0	1	0	0	0	0	0	0	0	5818	145	5	5		5	FBXO8	4	175158774	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	710251	175158774	15995502	758	32408											
ASB5	140458	broad.mit.edu	37	chr4	177142722	177142722	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcatgcgttgaataacggAgtcacgccatctatcgtgat	11	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177142722	T	T	177142722	2	4	15	1	0	0	0	0	0	0	0	1	1030	291	11	5		5	ASB5	4	177142722	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1983948	177142722	14011554	759	32409											
ODZ3	55714	broad.mit.edu	37	chr4	183522166	183522166	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagcatcatccatccatcActtctctcaacagaaactcc	2	17	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183522166	T	T	183522166	3	4	15	1	0	0	0	0	1	0	0	0	10931	159	6	5	611	5	ODZ3	4	183522166	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	6379444	183522166	7632110	760	32410											
ODZ3	55714	broad.mit.edu	37	chr4	183676381	183676381	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggccttttagccactaaaAgtgatgaaactggatggaca	11	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183676381	G	G	183676381	3	3	15	1	0	0	0	0	1	0	0	0	10931	72	3	5	4943	5	ODZ3	4	183676381	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	154215	183676381	7477895	761	32411											
STOX2	56977	broad.mit.edu	37	chr4	184930348	184930348	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagaaattctgcggcacacGctgaacacgctggtacggga	12	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184930348	C	C	184930348	2	2	15	1	0	0	0	0	0	0	0	1	15438	1074	38	4		4	STOX2	4	184930348	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1253967	184930348	6223928	762	32412											
FAT1	2195	broad.mit.edu	37	chr4	187527368	187527368	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgagcgtgtaacctgaaatCttttcaggcaaaagacagaa	10	7	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187527368	G	G	187527368	5	3	15	1	0	0	0	0	0	0	1	0	5746	927	32	4	3604	4	FAT1	4	187527368	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	2597020	187527368	3626908	763	32413											
TRIML2	205860	broad.mit.edu	37	chr4	189012860	189012860	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctctggccgtgctgcccttCgcgtctgcagagccgtggta	14	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189012860	G	G	189012860	2	3	15	1	0	0	0	0	0	0	0	1	16676	871	31	4		4	TRIML2	4	189012860	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1485492	189012860	2141416	764	32414											
TRIML2	205860	broad.mit.edu	37	chr4	189026199	189026199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttagcctttaggttgaaGgttcaacgaacttatctaat	7	7	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189026199	A	A	189026199	1	1	15	0	1	0	0	0	0	0	0	0	16676	1015	35	4		4	TRIML2	4	189026199	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	13339	189026199	2128077	765	32415											
TRIML1	339976	broad.mit.edu	37	chr4	189061043	189061043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctccgatgacgagcagGgtggaagcgccttcgtagcc	14	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189061043	T	T	189061043	3	4	15	1	0	0	0	0	1	0	0	0	16675	1232	43	2	333	2	TRIML1	4	189061043	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	34844	189061043	2093233	766	32416											
TRIML1	339976	broad.mit.edu	37	chr4	189061102	189061102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgcatctctccagcgaGgctgaggagcatcacagagt	13	10	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189061102	T	T	189061102	3	4	15	1	0	0	0	0	1	0	0	0	16675	991	35	2	392	2	TRIML1	4	189061102	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	59	189061102	2093174	767	32417											
TRIML1	339976	broad.mit.edu	37	chr4	189068295	189068295	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattacagcctctgggtctcGtcacctttgaaaggtcagca	10	11	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189068295	T	T	189068295	2	4	15	1	0	0	0	0	0	0	0	1	16675	1132	40	3		3	TRIML1	4	189068295	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	7193	189068295	2085981	768	32418											
TRIML1	339976	broad.mit.edu	37	chr4	189068532	189068532	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagccacgtctgaggggcGtgccctgagccgtcacagcg	14	14	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189068532	T	T	189068532	1	4	15	0	1	0	0	0	0	0	0	0	16675	1160	40	3		3	TRIML1	4	189068532	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	237	189068532	2085744	769	32419											
TRIP13	9319	broad.mit.edu	37	chr5	916038	916038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagagcgagggcctcagcGgccgggtcctgagaaaactc	16	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	916038	T	T	916038	3	4	15	1	0	0	0	0	1	0	0	0	16682	1116	39	1	1203	1	TRIP13	5	916038	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08		916038	179999222	770	32420											
SLC12A7	10723	broad.mit.edu	37	chr5	1083818	1083818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccagcgcctgctgccCccgccaccccccagctccag	10	23	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1083818	A	A	1083818	1	1	15	0	1	0	0	0	0	0	0	0	14501	638	22	2		2	SLC12A7	5	1083818	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	167780	1083818	179831442	771	32421											
SLC12A7	10723	broad.mit.edu	37	chr5	1088990	1088990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgtccggctgccaccgcCcgaaggcacaaccacagcgg	11	17	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1088990	A	A	1088990	1	1	15	0	1	0	0	0	0	0	0	0	14501	638	22	2		2	SLC12A7	5	1088990	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5172	1088990	179826270	772	32422											
CLPTM1L	81037	broad.mit.edu	37	chr5	1324024	1324024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccagttagaggcccaaaCgccaagcctctgtaaacaca	7	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1324024	A	A	1324024	1	1	15	0	1	0	0	0	0	0	0	0	3587	551	19	3		3	CLPTM1L	5	1324024	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	235034	1324024	179591236	773	32423											
IRX1	79192	broad.mit.edu	37	chr5	3599391	3599391	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcaccccgccaccttcgCagcccacacggcgccggctt	11	20	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3599391	G	G	3599391	3	3	15	1	0	0	0	0	1	0	0	0	7913	710	25	4	335	4	IRX1	5	3599391	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2275367	3599391	177315869	774	32424											
ADAMTS16	170690	broad.mit.edu	37	chr5	5209203	5209203	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctcatctcctctttgtttCagcaccgctcaagctatctg	6	14	6	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5209203	T	T	5209203	1	4	15	0	1	0	0	0	0	0	0	0	261	841	29	4		4	ADAMTS16	5	5209203	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1609812	5209203	175706057	775	32425											
PAPD7	11044	broad.mit.edu	37	chr5	6742603	6742603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaatgaaatctttacagGtaccaataataaagctcaca	4	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6742603	T	T	6742603	3	4	15	1	0	0	0	0	1	0	0	0	11520	1275	44	3	273	3	PAPD7	5	6742603	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1533400	6742603	174172657	776	32426											
ADCY2	108	broad.mit.edu	37	chr5	7520898	7520898	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgtacaccatgctgccCttcaacatgcgagacgccat	10	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7520898	T	T	7520898	2	4	15	1	0	0	0	0	0	0	0	1	294	668	24	4		4	ADCY2	5	7520898	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	778295	7520898	173394362	777	32427											
SEMA5A	9037	broad.mit.edu	37	chr5	9066613	9066613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccacttccagcaaattcGgatcagccaggcgggctttg	10	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9066613	T	T	9066613	3	4	15	1	0	0	0	0	1	0	0	0	14150	1116	39	1	1033	1	SEMA5A	5	9066613	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1545715	9066613	171848647	778	32428											
CCT5	22948	broad.mit.edu	37	chr5	10258573	10258573	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaaacaaagcataagctgGatgtgacctctgtcgaagat	9	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10258573	T	T	10258573	3	4	15	1	0	0	0	0	1	0	0	0	2986	1174	41	3	821	3	CCT5	5	10258573	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1191960	10258573	170656687	779	32429											
CTNND2	1501	broad.mit.edu	37	chr5	11236895	11236895	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaactggtgctgcaacatctGaatcacttccggcagttccg	9	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11236895	C	C	11236895	3	2	15	1	0	0	0	0	1	0	0	0	4054	1299	45	4	2060	4	CTNND2	5	11236895	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	978322	11236895	169678365	780	32430											
CTNND2	1501	broad.mit.edu	37	chr5	11397029	11397029	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattttccctcaagttgaggGacacacctacaaaaaaggca	7	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11397029	T	T	11397029	1	4	15	0	1	0	0	0	0	0	0	0	4054	1189	41	3		3	CTNND2	5	11397029	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	160134	11397029	169518231	781	32431											
MYO10	4651	broad.mit.edu	37	chr5	16818321	16818321	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttcattatcagcagtaaGtgatttttcacacaagtttc	5	7	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16818321	C	C	16818321	1	2	15	0	1	0	0	0	0	0	0	0	10156	1044	36	4		4	MYO10	5	16818321	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	5421292	16818321	164096939	782	32432											
CDH18	1016	broad.mit.edu	37	chr5	19747068	19747068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccatatctgacatttcaGgcacagtaacaatgtatggt	7	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19747068	T	T	19747068	3	4	15	1	0	0	0	0	1	0	0	0	3133	1000	35	2	1906	2	CDH18	5	19747068	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2928747	19747068	161168192	783	32433											
CDH12	1010	broad.mit.edu	37	chr5	21854810	21854810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaatagagaaataaggttGtccctgaagaatgctgtaaa	9	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21854810	T	T	21854810	3	4	15	1	0	0	0	0	1	0	0	0	3128	1386	48	3	1804	3	CDH12	5	21854810	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2107742	21854810	159060450	784	32434											
CDH12	1010	broad.mit.edu	37	chr5	21882679	21882679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgccgcgcgcatgccctGcagccgccccacagaaatgc	10	19	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21882679	T	T	21882679	1	4	15	0	1	0	0	0	0	0	0	0	3128	1334	46	3		3	CDH12	5	21882679	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	27869	21882679	159032581	785	32435											
CDH12	1010	broad.mit.edu	37	chr5	21975201	21975201	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgatttgcctactcaccCacaggagacatttctggaac	7	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21975201	A	A	21975201	2	1	15	1	0	0	0	0	0	0	0	1	3128	608	21	2		2	CDH12	5	21975201	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	92522	21975201	158940059	786	32436											
PRDM9	56979	broad.mit.edu	37	chr5	23509759	23509759	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acataaaacaggtctttggtCcctatattattttagttctc	5	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509759	T	T	23509759	1	4	15	0	1	0	0	0	0	0	0	0	12569	870	30	4		4	PRDM9	5	23509759	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1534558	23509759	157405501	787	32437											
PRDM9	56979	broad.mit.edu	37	chr5	23526486	23526486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctccaaccagagaatcCctgcccaggggatcagaatc	8	15	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23526486	A	A	23526486	3	1	15	1	0	0	0	0	1	0	0	0	12569	623	22	2	1327	2	PRDM9	5	23526486	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	16727	23526486	157388774	788	32438											
CDH10	1008	broad.mit.edu	37	chr5	24491822	24491822	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acactcgaatggtcagtgtgCctgtgctgctctgaattggg	13	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24491822	G	G	24491822	3	3	15	1	0	0	0	0	1	0	0	0	3126	739	26	4	635	4	CDH10	5	24491822	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	965336	24491822	156423438	789	32439											
CDH10	1008	broad.mit.edu	37	chr5	24509642	24509642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcgtgagccaccgagcCcggctgttttcatttttaaa	10	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24509642	A	A	24509642	1	1	15	0	1	0	0	0	0	0	0	0	3126	638	22	2		2	CDH10	5	24509642	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	17820	24509642	156405618	790	32440											
CDH10	1008	broad.mit.edu	37	chr5	24537761	24537761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatttgagtgatccatctCctttatcttggtctgaatgt	7	7	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24537761	A	A	24537761	3	1	15	1	0	0	0	0	1	0	0	0	3126	855	30	3	2152	3	CDH10	5	24537761	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	28119	24537761	156377499	791	32441											
CDH9	1007	broad.mit.edu	37	chr5	26881389	26881389	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaatctgctatggaatcattCccttcataggcatacgttgc	8	10	3	0	rs147182231		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881389	T	T	26881389	2	4	15	1	0	0	0	0	0	0	0	1	3147	842	30	4		4	CDH9	5	26881389	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2343628	26881389	154033871	792	32442											
CDH9	1007	broad.mit.edu	37	chr5	26905983	26905983	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcataaaccaatagcaaaacTactagtatgaaatgtgaata	6	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26905983	A	A	26905983	1	1	15	0	1	0	0	0	0	0	0	0	3147	1537	53	5		5	CDH9	5	26905983	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	24594	26905983	154009277	793	32443											
CDH9	1007	broad.mit.edu	37	chr5	26988179	26988179	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaataaatagctgtcacttTcagcttttagatttctcata	4	7	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26988179	A	A	26988179	1	1	15	0	1	0	0	0	0	0	0	0	3147	1798	62	5		5	CDH9	5	26988179	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	82196	26988179	153927081	794	32444											
NPR3	4883	broad.mit.edu	37	chr5	32712561	32712561	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccacgaggtcttccaggagGagggtttgcacacgtccatc	12	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32712561	T	T	32712561	4	4	15	1	0	0	0	0	0	1	0	0	10691	1175	41	3	681	3	NPR3	5	32712561	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5724382	32712561	148202699	795	32445											
ADAMTS12	81792	broad.mit.edu	37	chr5	33595908	33595908	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatagccacagaaaactcTaaccgcgttcttgtatttat	6	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33595908	C	C	33595908	1	2	15	0	1	0	0	0	0	0	0	0	257	1537	53	5		5	ADAMTS12	5	33595908	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	883347	33595908	147319352	796	32446											
ADAMTS12	81792	broad.mit.edu	37	chr5	33641839	33641839	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcttggggtcactgaggtCatgccattcaagactgcccc	12	12	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33641839	T	T	33641839	1	4	15	0	1	0	0	0	0	0	0	0	257	841	29	4		4	ADAMTS12	5	33641839	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	45931	33641839	147273421	797	32447											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658332	33658333	+	Nonsense_Mutation	DNP	CC	AA	AA													tgtgaaagccagagggagtcCcgaatcttcattgatgttac					rs74737607	byFrequency;by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	33658333	AA	AA	33658332	4	1	15	1	0	0	0	0	0	1	0	0	257	632	22	2	3709	2	ADAMTS12	5	33658332	Nonsense_Mutation	DNP	CC	TCGA-05-4410-01A-21D-1855-08	16493	33658332	147256928	798	32448											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881700	33881700	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggaaatggagttttgctCttgtttcccaggctggagtg	13	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33881700	A	A	33881700	1	1	15	0	1	0	0	0	0	0	0	0	257	928	32	3		3	ADAMTS12	5	33881700	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	223368	33881700	147033560	799	32449											
SPEF2	79925	broad.mit.edu	37	chr5	35753979	35753979	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcagggctcattttggtaTagcactatgcctggtatgag	12	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35753979	C	C	35753979	1	2	15	0	1	0	0	0	0	0	0	0	15153	1421	49	5		5	SPEF2	5	35753979	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1872279	35753979	145161281	800	32450											
SPEF2	79925	broad.mit.edu	37	chr5	35792438	35792438	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatttttcattgtattAtaggcataataggaaataaa	5	2	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35792438	G	G	35792438	1	3	15	0	1	0	0	0	0	0	0	0	15153	464	16	5		5	SPEF2	5	35792438	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	38459	35792438	145122822	801	32451											
IL7R	3575	broad.mit.edu	37	chr5	35876290	35876290	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcatcactccagaaagctTtggaagagattcatccctca	7	11	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35876290	A	A	35876290	3	1	15	1	0	0	0	0	1	0	0	0	7775	1841	64	5	1112	5	IL7R	5	35876290	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	83852	35876290	145038970	802	32452											
RANBP3L	202151	broad.mit.edu	37	chr5	36264991	36264991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcctatttctggatatggGggccccaaacaacctgcaaa	8	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36264991	T	T	36264991	1	4	15	0	1	0	0	0	0	0	0	0	13138	1247	43	2		2	RANBP3L	5	36264991	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	388701	36264991	144650269	803	32453											
RANBP3L	202151	broad.mit.edu	37	chr5	36301637	36301637	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattcatgcagatcttgtctTtgcatgtacaacatatactc	6	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36301637	A	A	36301637	1	1	15	0	1	0	0	0	0	0	0	0	13138	1856	64	5		5	RANBP3L	5	36301637	5'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	36646	36301637	144613623	804	32454											
C5orf42	65250	broad.mit.edu	37	chr5	37162576	37162576	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcatttacctgggtctgTatttgtacttgcatcttgac	8	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37162576	C	C	37162576	3	2	15	1	0	0	0	0	1	0	0	0	2324	1638	57	5	1972	5	C5orf42	5	37162576	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	860939	37162576	143752684	805	32455											
EGFLAM	133584	broad.mit.edu	37	chr5	38370546	38370546	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccccgcagctggcccagtGacatcatccggaccctctgt	10	18	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38370546	A	A	38370546	3	1	15	1	0	0	0	0	1	0	0	0	5006	1290	45	4	716	4	EGFLAM	5	38370546	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1207970	38370546	142544714	806	32456											
FYB	2533	broad.mit.edu	37	chr5	39202684	39202684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggccagggaaatgtagGtttggaatcttctttgggca	15	5	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39202684	T	T	39202684	3	4	15	1	0	0	0	0	1	0	0	0	6184	1261	44	3	2182	3	FYB	5	39202684	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	832138	39202684	141712576	807	32457											
C9	735	broad.mit.edu	37	chr5	39364588	39364588	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcttgctgggtggctgCgagtggggtggcagggcagg	21	8	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39364588	A	A	39364588	1	1	15	0	1	0	0	0	0	0	0	0	2469	783	27	3		3	C9	5	39364588	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	161904	39364588	141550672	808	32458											
DAB2	1601	broad.mit.edu	37	chr5	39390451	39390451	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attatttagccctcttacatCcaattatttccagtaaatct	2	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39390451	A	A	39390451	1	1	15	0	1	0	0	0	0	0	0	0	4251	870	30	3		3	DAB2	5	39390451	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	25863	39390451	141524809	809	32459											
HEATR7B2	133558	broad.mit.edu	37	chr5	41010120	41010120	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctagaatgaactgaaaaCtttcttctttttgtctgagg	7	7	4	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41010120	T	T	41010120	3	4	15	1	0	0	0	0	1	0	0	0	7102	565	20	4	1608	4	HEATR7B2	5	41010120	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1619669	41010120	139905140	810	32460											
HEATR7B2	133558	broad.mit.edu	37	chr5	41018522	41018523	+	Frame_Shift_Ins	INS	-	T	T													tttttgtgaaacaagccacaINStttggagaagctgttggtca							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41018523	T	T	41018522	7	5	15	1	0	1	1	0	0	0	0	0	7102	217	8	0	2137	0	HEATR7B2	5	41018522	Frame_Shift_Ins	INS	-	TCGA-05-4410-01A-21D-1855-08	8402	41018522	139896738	811	32461											
HEATR7B2	133558	broad.mit.edu	37	chr5	41045869	41045869	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctcagtggagttattgctGtaactgcccatttgctgttt	9	8	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41045869	C	C	41045869	4	2	15	1	0	0	0	0	0	1	0	0	7102	1372	48	4	3042	4	HEATR7B2	5	41045869	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	27347	41045869	139869391	812	32462											
HEATR7B2	133558	broad.mit.edu	37	chr5	41070936	41070936	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgatgcttacctatggattCctctgtactaagtgtcatgt	8	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41070936	A	A	41070936	4	1	15	1	0	0	0	0	0	1	0	0	7102	864	30	3	4906	3	HEATR7B2	5	41070936	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	25067	41070936	139844324	813	32463											
GHR	2690	broad.mit.edu	37	chr5	42467834	42467834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattcaaaaggtttctcccCggtgtggattctctgatgca	9	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42467834	A	A	42467834	1	1	15	0	1	0	0	0	0	0	0	0	6435	667	23	1		1	GHR	5	42467834	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1396898	42467834	138447426	814	32464											
C5orf34	375444	broad.mit.edu	37	chr5	43496007	43496007	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaaatgctactgtgtcaGggttgtaaccaattttctta	8	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43496007	T	T	43496007	1	4	15	0	1	0	0	0	0	0	0	0	2316	1015	35	2		2	C5orf34	5	43496007	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1028173	43496007	137419253	815	32465											
NNT	23530	broad.mit.edu	37	chr5	43700438	43700438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcagtgaagactgactaGtcagatgaaaaagaacttgt	10	5	2	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43700438	T	T	43700438	1	4	15	0	1	0	0	0	0	0	0	0	10605	1044	36	3		3	NNT	5	43700438	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	204431	43700438	137214822	816	32466											
ITGA1	3672	broad.mit.edu	37	chr5	52223409	52223409	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gattctgtttgctttctcttCctaggctatccaaaaagaca	6	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52223409	G	G	52223409	1	3	15	0	1	0	0	0	0	0	0	0	7942	870	30	4		4	ITGA1	5	52223409	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	8522971	52223409	128691851	817	32467											
MOCS2	4338	broad.mit.edu	37	chr5	52397233	52397233	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgactggccatttctgCctaatgtcactacaaatctt	6	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52397233	A	A	52397233	1	1	15	0	1	0	0	0	0	0	0	0	9785	738	26	3		3	MOCS2	5	52397233	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	173824	52397233	128518027	818	32468											
FST	10468	broad.mit.edu	37	chr5	52781424	52781424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatattatcacacatgggCtgctgctttttgcagttgcc	8	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52781424	A	A	52781424	1	1	15	0	1	0	0	0	0	0	0	0	6136	812	28	3		3	FST	5	52781424	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	384191	52781424	128133836	819	32469											
PLK2	10769	broad.mit.edu	37	chr5	57752456	57752456	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attacaaacattagtctatcTtaacaaggtaggaacagggt	8	6	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57752456	A	A	57752456	1	1	15	0	1	0	0	0	0	0	0	0	12191	1624	56	5		5	PLK2	5	57752456	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	4971032	57752456	123162804	820	32470											
PDE4D	5144	broad.mit.edu	37	chr5	58273273	58273273	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtaatttcccctaaacttCtctgctgcccttatcattac	3	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58273273	A	A	58273273	1	1	15	0	1	0	0	0	0	0	0	0	11736	928	32	3		3	PDE4D	5	58273273	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	520817	58273273	122641987	821	32471											
ELOVL7	79993	broad.mit.edu	37	chr5	60053392	60053392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacttctggtaggctggccCcaatgcagaaagtccatagt	10	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60053392	A	A	60053392	3	1	15	1	0	0	0	0	1	0	0	0	5121	623	22	2	273	2	ELOVL7	5	60053392	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1780119	60053392	120861868	822	32472											
HTR1A	3350	broad.mit.edu	37	chr5	63256918	63256918	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccatagagaaccagcatgAgcagcagcgggatgtagaaa	13	9	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63256918	T	T	63256918	3	4	15	1	0	0	0	0	1	0	0	0	7506	304	11	5	642	5	HTR1A	5	63256918	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	3203526	63256918	117658342	823	32473											
CWC27	10283	broad.mit.edu	37	chr5	64082413	64082413	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggctgaaaaaagagaaAccagaggaggaagtaaagaa	12	3	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64082413	C	C	64082413	3	2	15	1	0	0	0	0	1	0	0	0	4103	40	2	5	580	5	CWC27	5	64082413	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	825495	64082413	116832847	824	32474											
NLN	57486	broad.mit.edu	37	chr5	65084126	65084126	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccatagaccaagagttcctCaaggaatacttcccaattga	6	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65084126	G	G	65084126	2	3	15	1	0	0	0	0	0	0	0	1	10562	813	29	4		4	NLN	5	65084126	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1001713	65084126	115831134	825	32475											
CD180	4064	broad.mit.edu	37	chr5	66479590	66479590	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaagcagccaacaccaaGgtgaagtttcttcacgttgc	8	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66479590	A	A	66479590	3	1	15	1	0	0	0	0	1	0	0	0	3002	1000	35	4	908	4	CD180	5	66479590	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1395464	66479590	114435670	826	32476											
CARTPT	9607	broad.mit.edu	37	chr5	71015816	71015816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtggtcactcccttccCgtgtttttccaagagaaagt	9	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71015816	A	A	71015816	1	1	15	0	1	0	0	0	0	0	0	0	2685	667	23	1		1	CARTPT	5	71015816	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	4536226	71015816	109899444	827	32477											
MAP1B	4131	broad.mit.edu	37	chr5	71499717	71499717	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaagaggcacctcatgTggctgatcgtggatccacat	11	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71499717	A	A	71499717	1	1	15	0	1	0	0	0	0	0	0	0	9320	1711	59	5		5	MAP1B	5	71499717	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	483901	71499717	109415543	828	32478											
COL4A3BP	10087	broad.mit.edu	37	chr5	74807074	74807074	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagaccggcccccgctccctCagctgcgccggaggaggcgc	15	18	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74807074	T	T	74807074	1	4	15	0	1	0	0	0	0	0	0	0	3724	835	29	4		4	COL4A3BP	5	74807074	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	3307357	74807074	106108186	829	32479											
IQGAP2	10788	broad.mit.edu	37	chr5	75948542	75948542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaattgggaaacttgctgGtaaataattctataacccac	6	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75948542	T	T	75948542	1	4	15	0	1	0	0	0	0	0	0	0	7885	1276	44	3		3	IQGAP2	5	75948542	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1141468	75948542	104966718	830	32480											
PDE8B	8622	broad.mit.edu	37	chr5	76704900	76704900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgtgagtgatgaggcaaaAcctgaaaagcaagagaggta	13	5	0	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76704900	T	T	76704900	1	4	15	0	1	0	0	0	0	0	0	0	11748	58	2	5		5	PDE8B	5	76704900	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	756358	76704900	104210360	831	32481											
PDE8B	8622	broad.mit.edu	37	chr5	76707810	76707810	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtcttgaagttcaataacaGaaaaatcaggtacaagactt	8	6	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76707810	A	A	76707810	1	1	15	0	1	0	0	0	0	0	0	0	11748	957	33	4		4	PDE8B	5	76707810	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2910	76707810	104207450	832	32482											
PDE8B	8622	broad.mit.edu	37	chr5	76721722	76721722	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtttgatgcttgggatgGtaagacagttactgttttgt	12	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76721722	T	T	76721722	5	4	15	1	0	0	0	0	0	0	1	0	11748	1275	44	3	2631	3	PDE8B	5	76721722	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	13912	76721722	104193538	833	32483											
CMYA5	202333	broad.mit.edu	37	chr5	79030273	79030273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaggatgaaaactggatGttgggaaagccagaaaatgt	12	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79030273	T	T	79030273	3	4	15	1	0	0	0	0	1	0	0	0	3622	1377	48	3	5691	3	CMYA5	5	79030273	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2308551	79030273	101884987	834	32484											
VCAN	1462	broad.mit.edu	37	chr5	82815315	82815315	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattccaacagagttccctcCcgtgggaaatattgtcagtt	8	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82815315	G	G	82815315	3	3	15	1	0	0	0	0	1	0	0	0	17265	623	22	4	1212	4	VCAN	5	82815315	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3785042	82815315	98099945	835	32485											
MEF2C	4208	broad.mit.edu	37	chr5	88119488	88119488	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagatattttctgtaccCttaacatatgtggagaaaat	6	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88119488	A	A	88119488	1	1	15	0	1	0	0	0	0	0	0	0	9550	696	24	2		2	MEF2C	5	88119488	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5304173	88119488	92795772	836	32486											
MBLAC2	153364	broad.mit.edu	37	chr5	89756990	89756990	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcagtatagatactagggCgaggtcctagaatttgttac	10	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89756990	A	A	89756990	2	1	15	1	0	0	0	0	0	0	0	1	9445	755	27	3		3	MBLAC2	5	89756990	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1637502	89756990	91158270	837	32487											
ST8SIA4	7903	broad.mit.edu	37	chr5	100231301	100231301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatacaagtttgccaagCccaacgtatttgagaacatg	8	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100231301	A	A	100231301	1	1	15	0	1	0	0	0	0	0	0	0	15352	754	26	3		3	ST8SIA4	5	100231301	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	10474311	100231301	80683959	838	32488											
PPIP5K2	23262	broad.mit.edu	37	chr5	102469323	102469323	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggaaaactggcctttatGtgattgtcttatttctttcc	8	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102469323	A	A	102469323	3	1	15	1	0	0	0	0	1	0	0	0	12434	1377	48	4	287	4	PPIP5K2	5	102469323	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2238022	102469323	78445937	839	32489											
CAMK4	814	broad.mit.edu	37	chr5	110813916	110813916	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgattgtgtgtttacactAtaaatagtgaattgtaataa	7	3	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110813916	G	G	110813916	1	3	15	0	1	0	0	0	0	0	0	0	2631	464	16	5		5	CAMK4	5	110813916	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	8344593	110813916	70101344	840	32490											
MCC	4163	broad.mit.edu	37	chr5	112437459	112437459	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctccggagccggtcccgctCttcccggatggcattcatgg	12	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112437459	A	A	112437459	4	1	15	1	0	0	0	0	0	1	0	0	9466	922	32	3	1732	3	MCC	5	112437459	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1623543	112437459	68477801	841	32491											
YTHDC2	64848	broad.mit.edu	37	chr5	112929101	112929101	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactcaggttataccatcttGactttgagtattggcagtat	8	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112929101	T	T	112929101	1	4	15	0	1	0	0	0	0	0	0	0	17624	1305	45	3		3	YTHDC2	5	112929101	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	491642	112929101	67986159	842	32492											
AQPEP	206338	broad.mit.edu	37	chr5	115336380	115336380	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcctactttctgacacaTtcttgctgagttgttttgta	7	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115336380	C	C	115336380	1	2	15	0	1	0	0	0	0	0	0	0	836	1508	52	5		5	AQPEP	5	115336380	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	2407279	115336380	65578880	843	32493											
CEP120	153241	broad.mit.edu	37	chr5	122724331	122724331	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataaaataaaacaaaataaTcacacttgctaacagtttct	2	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122724331	A	A	122724331	1	1	15	0	1	0	0	0	0	0	0	0	3276	1450	50	5		5	CEP120	5	122724331	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	7387951	122724331	58190929	844	32494											
LMNB1	4001	broad.mit.edu	37	chr5	126156789	126156789	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatcgaagaaattgatgttGatgggaaatttatccgcttg	11	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126156789	C	C	126156789	3	2	15	1	0	0	0	0	1	0	0	0	8923	1290	45	4	1374	4	LMNB1	5	126156789	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3432458	126156789	54758471	845	32495											
SLC12A2	6558	broad.mit.edu	37	chr5	127487036	127487036	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactggtgggctgcattgctAacatatgtgatagtccttgg	12	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127487036	T	T	127487036	2	4	15	1	0	0	0	0	0	0	0	1	14496	349	13	5		5	SLC12A2	5	127487036	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1330247	127487036	53428224	846	32496											
FBN2	2201	broad.mit.edu	37	chr5	127622515	127622515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctagattcacagtcgtGtaacccttcagcacattcat	6	14	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127622515	T	T	127622515	3	4	15	1	0	0	0	0	1	0	0	0	5760	1377	48	3	1875	3	FBN2	5	127622515	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	135479	127622515	53292745	847	32497											
FBN2	2201	broad.mit.edu	37	chr5	127644853	127644853	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgagcatctctagttttAgcatgcagtgactttgacta	8	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127644853	T	T	127644853	1	4	15	0	1	0	0	0	0	0	0	0	5760	435	15	5		5	FBN2	5	127644853	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	22338	127644853	53270407	848	32498											
RAPGEF6	51735	broad.mit.edu	37	chr5	130828276	130828276	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttggttatttccttaccTgatcaccacgtttcagtcct	7	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130828276	A	A	130828276	3	1	15	1	0	0	0	0	1	0	0	0	13156	1594	55	5	3621	5	RAPGEF6	5	130828276	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	3183423	130828276	50086984	849	32499											
RAD50	10111	broad.mit.edu	37	chr5	131895051	131895051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggaaatacatttgtacacGatcccaaggtaatggtgcta	9	7	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131895051	T	T	131895051	3	4	15	1	0	0	0	0	1	0	0	0	13092	1058	37	3	211	3	RAD50	5	131895051	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1066775	131895051	49020209	850	32500											
FSTL4	23105	broad.mit.edu	37	chr5	132556280	132556280	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgagaattttaaattctCagcctcatctattcctctct	4	10	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132556280	T	T	132556280	1	4	15	0	1	0	0	0	0	0	0	0	6139	841	29	4		4	FSTL4	5	132556280	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	661229	132556280	48358980	851	32501											
KLHL3	26249	broad.mit.edu	37	chr5	136964068	136964068	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaacctcaacgctcttcctCaccaaaggcccatcatgccc	4	18	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136964068	A	A	136964068	2	1	15	1	0	0	0	0	0	0	0	1	8454	813	29	3		3	KLHL3	5	136964068	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	4407788	136964068	43951192	852	32502											
NRG2	9542	broad.mit.edu	37	chr5	139231342	139231342	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgctggtacccactgatGatagcatgatccccgactgg	10	11	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139231342	A	A	139231342	3	1	15	1	0	0	0	0	1	0	0	0	10743	1294	45	4	941	4	NRG2	5	139231342	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2267274	139231342	41683918	853	32503											
PCDHA1	56147	broad.mit.edu	37	chr5	140180780	140180780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatatttggaaaatacttGcaatgttgttctcctggcga	8	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140180780	T	T	140180780	1	4	15	0	1	0	0	0	0	0	0	0	11613	1334	46	3		3	PCDHA1	5	140180780	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	949438	140180780	40734480	854	32504											
PCDHB2	56133	broad.mit.edu	37	chr5	140476226	140476226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacggagcccgggctgttcGgcgtgtgggcgcacaatggc	17	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140476226	T	T	140476226	3	4	15	1	0	0	0	0	1	0	0	0	11636	1116	39	1	1854	1	PCDHB2	5	140476226	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	295446	140476226	40439034	855	32505											
PCDHB7	56129	broad.mit.edu	37	chr5	140552728	140552728	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagagagccctgtgtgctGcctttccagttgttattgga	11	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140552728	C	C	140552728	2	2	15	1	0	0	0	0	0	0	0	1	11641	1306	46	4		4	PCDHB7	5	140552728	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	76502	140552728	40362532	856	32506											
PCDHGA5	56110	broad.mit.edu	37	chr5	140745190	140745190	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaccatggaaccccgccCctctctacagaaagccacat	7	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140745190	A	A	140745190	2	1	15	1	0	0	0	0	0	0	0	1	11651	610	22	2		2	PCDHGA5	5	140745190	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	192462	140745190	40170070	857	32507											
PCDHGA7	56108	broad.mit.edu	37	chr5	140763276	140763276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatgctatcgacctggaCgagggagtcaatggggaagt	15	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140763276	A	A	140763276	3	1	15	1	0	0	0	0	1	0	0	0	11653	535	19	3	812	3	PCDHGA7	5	140763276	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	18086	140763276	40151984	858	32508											
PCDHGA7	56108	broad.mit.edu	37	chr5	140764644	140764644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagtcacgcctgctgcaGgcttcagaaggtggcttggc	13	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140764644	T	T	140764644	3	4	15	1	0	0	0	0	1	0	0	0	11653	991	35	2	2180	2	PCDHGA7	5	140764644	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1368	140764644	40150616	859	32509											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773763	140773763	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctcctactcagcgtatatCctagagaacaacctgagagg	9	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140773763	G	G	140773763	3	3	15	1	0	0	0	0	1	0	0	0	11654	845	30	4	1385	4	PCDHGA8	5	140773763	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	9119	140773763	40141497	860	32510											
PCDHGB7	56099	broad.mit.edu	37	chr5	140799740	140799740	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaattttttcacatctgttGatcattgtccagccacacaa	4	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140799740	C	C	140799740	3	2	15	1	0	0	0	0	1	0	0	0	11662	1290	45	4	2316	4	PCDHGB7	5	140799740	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	25977	140799740	40115520	861	32511											
PCDH1	5097	broad.mit.edu	37	chr5	141236969	141236969	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccactgtcatagtaactgTgctgggatgggtcctgcagc	14	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141236969	A	A	141236969	3	1	15	1	0	0	0	0	1	0	0	0	11600	1696	59	5	554	5	PCDH1	5	141236969	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	437229	141236969	39678291	862	32512											
PPP2R2B	5521	broad.mit.edu	37	chr5	146030091	146030091	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcaggccagttgattcttGatcacaaagaaaggatacta	8	7	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146030091	T	T	146030091	1	4	15	0	1	0	0	0	0	0	0	0	12486	1305	45	3		3	PPP2R2B	5	146030091	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4793122	146030091	34885169	863	32513											
ABLIM3	22885	broad.mit.edu	37	chr5	148631777	148631778	+	Intron	DNP	GG	TT	TT													tctgcagagtacaaggtaaaGgatgtgcatagaccctgggg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	148631778	TT	TT	148631777	1	4	15	0	1	0	0	0	0	0	0	0	96	1015	35	2		2	ABLIM3	5	148631777	Intron	DNP	GG	TCGA-05-4410-01A-21D-1855-08	2601686	148631777	32283483	864	32514											
PDE6A	5145	broad.mit.edu	37	chr5	149278102	149278102	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaggaggaatcagagacaGaacacctaagtttaatcttg	10	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149278102	A	A	149278102	1	1	15	0	1	0	0	0	0	0	0	0	11739	957	33	4		4	PDE6A	5	149278102	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	646325	149278102	31637158	865	32515											
TCOF1	6949	broad.mit.edu	37	chr5	149777727	149777727	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctgggcttaagcaatcCacccgcctcagcctcccaaa	6	18	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149777727	T	T	149777727	1	4	15	0	1	0	0	0	0	0	0	0	15830	609	21	4		4	TCOF1	5	149777727	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	499625	149777727	31137533	866	32516											
SLC36A1	206358	broad.mit.edu	37	chr5	150858948	150858948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacgcactccagttctacGtcccggctgagatcatcatc	7	16	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150858948	T	T	150858948	3	4	15	1	0	0	0	0	1	0	0	0	14707	1145	40	3	1091	3	SLC36A1	5	150858948	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1081221	150858948	30056312	867	32517											
SPARC	6678	broad.mit.edu	37	chr5	151054176	151054176	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcactgcccacatacctcAgtcacctctgccacagtttc	6	17	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151054176	T	T	151054176	2	4	15	1	0	0	0	0	0	0	0	1	15111	175	7	5		5	SPARC	5	151054176	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	195228	151054176	29861084	868	32518											
GLRA1	2741	broad.mit.edu	37	chr5	151234798	151234798	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcacttgtttgaagcatgtCaggattggttagggttagag	14	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151234798	A	A	151234798	1	1	15	0	1	0	0	0	0	0	0	0	6518	841	29	3		3	GLRA1	5	151234798	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	180622	151234798	29680462	869	32519											
NMUR2	56923	broad.mit.edu	37	chr5	151784225	151784225	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtttggcgcggaacggGtgtaggatggccacgtagcg	18	8	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151784225	A	A	151784225	2	1	15	1	0	0	0	0	0	0	0	1	10602	1252	44	4		4	NMUR2	5	151784225	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	549427	151784225	29131035	870	32520											
GRIA1	2890	broad.mit.edu	37	chr5	153077700	153077700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaacagaacatacatcGtcacaacaatcctagtgagt	6	10	2	3	rs147418341		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153077700	T	T	153077700	3	4	15	1	0	0	0	0	1	0	0	0	6833	1145	40	3	1265	3	GRIA1	5	153077700	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1293475	153077700	27837560	871	32521											
LARP1	23367	broad.mit.edu	37	chr5	154181811	154181811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagacaccacattacatgcGccggcacccagggggggacc	12	16	0	1	rs145327227		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154181811	T	T	154181811	3	4	15	1	0	0	0	0	1	0	0	0	8700	1087	38	3	1772	3	LARP1	5	154181811	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1104111	154181811	26733449	872	32522											
ADAM19	8728	broad.mit.edu	37	chr5	156917529	156917529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagcagatttcaaaatagGtattcgtgcttcttcttcag	7	8	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156917529	T	T	156917529	1	4	15	0	1	0	0	0	0	0	0	0	240	1276	44	3		3	ADAM19	5	156917529	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2735718	156917529	23997731	873	32523											
ADAM19	8728	broad.mit.edu	37	chr5	156964958	156964958	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtttgagggttaccacttGaagtataatgggtttctgtg	13	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156964958	A	A	156964958	3	1	15	1	0	0	0	0	1	0	0	0	240	1294	45	4	2543	4	ADAM19	5	156964958	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	47429	156964958	23950302	874	32524											
GABRB2	2561	broad.mit.edu	37	chr5	160761929	160761929	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacctagaaaggcaattttaGaacatcatcattatcaatca	4	8	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160761929	A	A	160761929	1	1	15	0	1	0	0	0	0	0	0	0	6227	957	33	4		4	GABRB2	5	160761929	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3796971	160761929	20153331	875	32525											
GABRA6	2559	broad.mit.edu	37	chr5	161116240	161116240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataatactaactcagaaccGttgatttcaatgtttctagg	6	8	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161116240	T	T	161116240	1	4	15	0	1	0	0	0	0	0	0	0	6225	1160	40	3		3	GABRA6	5	161116240	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	354311	161116240	19799020	876	32526											
HMMR	3161	broad.mit.edu	37	chr5	162902408	162902408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacttttttttgtctcctaGtacaacctcacaatgccatt	4	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162902408	T	T	162902408	1	4	15	0	1	0	0	0	0	0	0	0	7309	1044	36	3		3	HMMR	5	162902408	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1786168	162902408	18012852	877	32527											
SLIT3	6586	broad.mit.edu	37	chr5	168151447	168151447	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggtgtcggagggcggaCagctctctgggcacggctgt	18	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168151447	G	G	168151447	2	3	15	1	0	0	0	0	0	0	0	1	14855	465	17	4		4	SLIT3	5	168151447	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	5249039	168151447	12763813	878	32528											
SLIT3	6586	broad.mit.edu	37	chr5	168176693	168176693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctactgtgggagcggccCtgggatctgctgcccagagc	14	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168176693	A	A	168176693	1	1	15	0	1	0	0	0	0	0	0	0	14855	696	24	2		2	SLIT3	5	168176693	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	25246	168176693	12738567	879	32529											
C5orf58	133874	broad.mit.edu	37	chr5	169672990	169672990	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagttattgctttgtgAccttatcctacattttaatc	4	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169672990	G	G	169672990	3	3	15	1	0	0	0	0	1	0	0	0	2336	275	10	5	192	5	C5orf58	5	169672990	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1496297	169672990	11242270	880	32530											
FGF18	8817	broad.mit.edu	37	chr5	170883614	170883614	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactacacggccctgatgtcGgctaagtactccggctggta	11	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170883614	A	A	170883614	2	1	15	1	0	0	0	0	0	0	0	1	5903	1103	39	4		4	FGF18	5	170883614	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1210624	170883614	10031646	881	32531											
STK10	6793	broad.mit.edu	37	chr5	171488319	171488319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatccagagccggcttgggCacctccatgtctcttcctat	8	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171488319	A	A	171488319	1	1	15	0	1	0	0	0	0	0	0	0	15404	725	25	3		3	STK10	5	171488319	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	604705	171488319	9426941	882	32532											
STC2	8614	broad.mit.edu	37	chr5	172750374	172750374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacttccggcttatgcagccGaacctgtgccgcagagcgtg	12	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172750374	T	T	172750374	3	4	15	1	0	0	0	0	1	0	0	0	15394	1049	37	3	562	3	STC2	5	172750374	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1262055	172750374	8164886	883	32533											
STC2	8614	broad.mit.edu	37	chr5	172753012	172753012	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaaacagtgctggatctcCgctaaaaggaaaatcacata	7	10	2	0	rs145449570	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172753012	T	T	172753012	2	4	15	1	0	0	0	0	0	0	0	1	15394	666	23	4		4	STC2	5	172753012	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2638	172753012	8162248	884	32534											
HMP19	51617	broad.mit.edu	37	chr5	173531355	173531355	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctataaggtaagaggtggttGagtagtcccaggtcactatc	12	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173531355	C	C	173531355	1	2	15	0	1	0	0	0	0	0	0	0	7312	1305	45	4		4	HMP19	5	173531355	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	778343	173531355	7383905	885	32535											
DRD1	1812	broad.mit.edu	37	chr5	174869611	174869611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttgtgggttttgccttGtgccagctgagctgcactgg	16	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174869611	T	T	174869611	3	4	15	1	0	0	0	0	1	0	0	0	4796	1368	48	3	852	3	DRD1	5	174869611	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1338256	174869611	6045649	886	32536											
DRD1	1812	broad.mit.edu	37	chr5	174870123	174870123	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcctaagagaaagcacatCaggggctctgacacccctca	8	14	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174870123	A	A	174870123	1	1	15	0	1	0	0	0	0	0	0	0	4796	841	29	3		3	DRD1	5	174870123	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	512	174870123	6045137	887	32537											
CPLX2	10814	broad.mit.edu	37	chr5	175306929	175306929	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgaggggagcctgaccCggcccaagaaggccatccct	13	16	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175306929	G	G	175306929	3	3	15	1	0	0	0	0	1	0	0	0	3837	643	23	4	296	4	CPLX2	5	175306929	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	436806	175306929	5608331	888	32538											
FAM153B	202134	broad.mit.edu	37	chr5	175488843	175488843	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcggaagtggagcgctgcCtggagcgcaggagcagagac	18	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175488843	T	T	175488843	1	4	15	0	1	0	0	0	0	0	0	0	5507	696	24	4		4	FAM153B	5	175488843	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	181914	175488843	5426417	889	32539											
C5orf25	375484	broad.mit.edu	37	chr5	175751758	175751758	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacattcctgagaggagccaGaggtgagtcttgattttgtt	13	6	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175751758	C	C	175751758	3	2	15	1	0	0	0	0	1	0	0	0	2311	933	33	4	889	4	C5orf25	5	175751758	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	262915	175751758	5163502	890	32540											
PDLIM7	9260	broad.mit.edu	37	chr5	176917952	176917952	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaaaaagacacagggtcAgggatcacgcctgggctggg	14	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176917952	C	C	176917952	1	2	15	0	1	0	0	0	0	0	0	0	11778	203	7	5		5	PDLIM7	5	176917952	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1166194	176917952	3997308	891	32541											
TMED9	54732	broad.mit.edu	37	chr5	177019188	177019188	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcgacgtggcgcggccggCtgcggctgcgcaggcaggtg	22	12	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177019188	T	T	177019188	1	4	15	0	1	0	0	0	0	0	0	0	16135	812	28	4		4	TMED9	5	177019188	5'Flank	SNP	C	TCGA-05-4410-01A-21D-1855-08	101236	177019188	3896072	892	32542											
TMED9	54732	broad.mit.edu	37	chr5	177019267	177019267	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccggcccggaaccgggCtgggtagagtgatgcggacc	18	13	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177019267	T	T	177019267	2	4	15	1	0	0	0	0	0	0	0	1	16135	796	28	4		4	TMED9	5	177019267	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	79	177019267	3895993	893	32543											
ZNF454	285676	broad.mit.edu	37	chr5	178374069	178374069	+	Intron	DEL	A	-	-													gggaaggcagggaggcttgcAgatgcacctgcctgaggatt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	178374069	-	-	178374069	6	5	15	0	1	1	0	1	0	0	0	0	18050	203	7	0		0	ZNF454	5	178374069	Intron	DEL	A	TCGA-05-4410-01A-21D-1855-08	1354802	178374069	2541191	894	32544											
ZNF354C	30832	broad.mit.edu	37	chr5	178489012	178489012	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgacacctttttcctctGcagacccaccgtgtccacac	5	17	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178489012	A	A	178489012	1	1	15	0	1	0	0	0	0	0	0	0	17992	1334	46	4		4	ZNF354C	5	178489012	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	114943	178489012	2426248	895	32545											
RUFY1	80230	broad.mit.edu	37	chr5	179023446	179023446	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatctccacgtgttaaaActcacaagagttaattttac	5	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179023446	C	C	179023446	1	2	15	0	1	0	0	0	0	0	0	0	13849	58	2	5		5	RUFY1	5	179023446	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	534434	179023446	1891814	896	32546											
HNRNPH1	3187	broad.mit.edu	37	chr5	179050070	179050070	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcacttcatcggccgagCaagaccagggcaagccccgg	12	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179050070	T	T	179050070	3	4	15	1	0	0	0	0	1	0	0	0	7333	710	25	4	1332	4	HNRNPH1	5	179050070	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	26624	179050070	1865190	897	32547											
FLT4	2324	broad.mit.edu	37	chr5	180048740	180048740	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcacgttcttgcagtcgaGcagaagcgggttcccgtgcg	14	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180048740	A	A	180048740	3	1	15	1	0	0	0	0	1	0	0	0	6002	971	34	4	2349	4	FLT4	5	180048740	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	998670	180048740	866520	898	32548											
EXOC2	55770	broad.mit.edu	37	chr6	572554	572554	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccattaacgtaggagatcCagagtttccagaagttaggc	10	8	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	572554	T	T	572554	4	4	15	1	0	0	0	0	0	1	0	0	5344	595	21	4	1429	4	EXOC2	6	572554	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08		572554	170542513	899	32549											
SERPINB9	5272	broad.mit.edu	37	chr6	2900746	2900746	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccagggcagaggagatgcTcacaggagaacagaacacgt	15	9	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2900746	C	C	2900746	3	2	15	1	0	0	0	0	1	0	0	0	14221	1551	54	5	1054	5	SERPINB9	6	2900746	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	2328192	2900746	168214321	900	32550											
SERPINB6	5269	broad.mit.edu	37	chr6	2956008	2956008	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaccatccagacccttattaCtgcttaaaagatctatccga	4	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2956008	G	G	2956008	1	3	15	0	1	0	0	0	0	0	0	0	14218	580	20	4		4	SERPINB6	6	2956008	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	55262	2956008	168159059	901	32551											
RBM24	221662	broad.mit.edu	37	chr6	17292055	17292055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcattccacacgtccagcCgacagcagctgccgcctcca	9	18	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17292055	A	A	17292055	3	1	15	1	0	0	0	0	1	0	0	0	13232	652	23	1	463	1	RBM24	6	17292055	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	14336047	17292055	153823012	902	32552											
CAP2	10486	broad.mit.edu	37	chr6	17421832	17421832	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagactggaacgagctgtcAgccgcctggagtcgctgtct	13	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17421832	G	G	17421832	3	3	15	1	0	0	0	0	1	0	0	0	2646	188	7	5	48	5	CAP2	6	17421832	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	129777	17421832	153693235	903	32553											
HIST1H2AE	3012	broad.mit.edu	37	chr6	26217275	26217275	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcttccagggccggtcttCagtttccagttggccgtgtg	13	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26217275	T	T	26217275	4	4	15	1	0	0	0	0	0	1	0	0	7199	827	29	4	75	4	HIST1H2AE	6	26217275	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	8795443	26217275	144897792	904	32554											
HIST1H3F	8968	broad.mit.edu	37	chr6	26250535	26250535	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcaaagagccccaccaggTaagcctcgcaggcctcctgc	9	18	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26250535	A	A	26250535	3	1	15	1	0	0	0	0	1	0	0	0	7227	1638	57	5	115	5	HIST1H3F	6	26250535	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	33260	26250535	144864532	905	32555											
HIST1H2BH	8345	broad.mit.edu	37	chr6	26252083	26252083	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatgaattcctttgtcaacGatatcttcgagcgcatcgcc	7	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26252083	C	C	26252083	3	2	15	1	0	0	0	0	1	0	0	0	7214	1058	37	4	207	4	HIST1H2BH	6	26252083	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1548	26252083	144862984	906	32556											
PRSS16	10279	broad.mit.edu	37	chr6	27222785	27222785	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggacacagacccctggcatGtgctaagtgtaacacaggct	12	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27222785	C	C	27222785	3	2	15	1	0	0	0	0	1	0	0	0	12722	1377	48	4	1393	4	PRSS16	6	27222785	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	970702	27222785	143892282	907	32557											
ZKSCAN4	387032	broad.mit.edu	37	chr6	28217492	28217492	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtaagggctgggatcccaGagattcatgcttgaacagag	14	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28217492	C	C	28217492	3	2	15	1	0	0	0	0	1	0	0	0	17815	933	33	4	1109	4	ZKSCAN4	6	28217492	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	994707	28217492	142897575	908	32558											
NKAPL	222698	broad.mit.edu	37	chr6	28227250	28227250	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accatccccgcagagcagatGttcctcttgggatggctgtt	11	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28227250	C	C	28227250	3	2	15	1	0	0	0	0	1	0	0	0	10535	1377	48	4	103	4	NKAPL	6	28227250	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	9758	28227250	142887817	909	32559											
ZNF323	64288	broad.mit.edu	37	chr6	28297162	28297162	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactctccggatggtgctccCgcacccaggcctggagctcc	11	18	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28297162	G	G	28297162	3	3	15	1	0	0	0	0	1	0	0	0	17969	652	23	4	933	4	ZNF323	6	28297162	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	69912	28297162	142817905	910	32560											
OR2B3	442184	broad.mit.edu	37	chr6	29054080	29054080	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctcatcacaatggagtaCttcttatttcttacagaaaa	4	8	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29054080	A	A	29054080	1	1	15	0	1	0	0	0	0	0	0	0	11084	580	20	3		3	OR2B3	6	29054080	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	756918	29054080	142060987	911	32561											
GABBR1	2550	broad.mit.edu	37	chr6	29549974	29549974	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggttatttatatctgttaTgtctatataataaagatact	5	4	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29549974	C	C	29549974	1	2	15	0	1	0	0	0	0	0	0	0	6215	1479	51	5		5	GABBR1	6	29549974	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	495894	29549974	141565093	912	32562											
GABBR1	2550	broad.mit.edu	37	chr6	29572417	29572417	+	Intron	DEL	G	-	-													ggtgatcagcctgcgcatctGggggcaaatgtttgggcgtg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29572417	-	-	29572417	6	5	15	0	1	1	0	1	0	0	0	0	6215	1363	47	0		0	GABBR1	6	29572417	Intron	DEL	G	TCGA-05-4410-01A-21D-1855-08	22443	29572417	141542650	913	32563											
HLA-B	3106	broad.mit.edu	37	chr6	31245300	31245300	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacagattcctgctaagcagGatagggaaccttccaaactg	9	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31245300	T	T	31245300	1	4	15	0	1	0	0	0	0	0	0	0	7263	1189	41	3		3	HLA-B	6	31245300	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1672883	31245300	139869767	914	32564											
NOTCH4	4855	broad.mit.edu	37	chr6	32163899	32163899	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacttccaccgctccttccCgcgccgccaggaatagcggc	9	19	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32163899	T	T	32163899	3	4	15	1	0	0	0	0	1	0	0	0	10646	652	23	4	688	4	NOTCH4	6	32163899	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	918599	32163899	138951168	915	32565											
NOTCH4	4855	broad.mit.edu	37	chr6	32187892	32187892	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcagagaggctctgaagtGggagtggcctcacccatcag	14	11	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32187892	A	A	32187892	1	1	15	0	1	0	0	0	0	0	0	0	10646	1363	47	4		4	NOTCH4	6	32187892	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	23993	32187892	138927175	916	32566											
HLA-DMA	3108	broad.mit.edu	37	chr6	32918136	32918136	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtacttcggcccaccaaaaGaacacagggtgcagaccaag	11	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32918136	C	C	32918136	1	2	15	0	1	0	0	0	0	0	0	0	7265	957	33	4		4	HLA-DMA	6	32918136	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	730244	32918136	138196931	917	32567											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33052926	33052926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagatcctggtgatgctGgaaatgaccccccagcaggg	12	12	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33052926	T	T	33052926	2	4	15	1	0	0	0	0	0	0	0	1	7270	1335	47	2		2	HLA-DPB1	6	33052926	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	134790	33052926	138062141	918	32568											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33074438	33074438	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcctcatacaggaagctgAcaagttggcctggctccagg	12	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33074438	T	T	33074438	1	4	15	0	1	0	0	0	0	0	0	0	7270	290	10	5		5	HLA-DPB1	6	33074438	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	21512	33074438	138040629	919	32569											
DAXX	1616	broad.mit.edu	37	chr6	33287597	33287597	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttcattggagatctgTagtgaggacatggggctctt	12	6	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33287597	C	C	33287597	2	2	15	1	0	0	0	0	0	0	0	1	4276	1625	57	5		5	DAXX	6	33287597	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	213159	33287597	137827470	920	32570											
PACSIN1	29993	broad.mit.edu	37	chr6	34496380	34496380	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggggggcctctgggcagGggcaatgaggttcttgtgac	20	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34496380	A	A	34496380	1	1	15	0	1	0	0	0	0	0	0	0	11468	1247	43	4		4	PACSIN1	6	34496380	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1208783	34496380	136618687	921	32571											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34826039	34826039	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacctccagagtctcttcCggggttttgctgctgctgag	12	12	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34826039	T	T	34826039	3	4	15	1	0	0	0	0	1	0	0	0	17094	643	23	4	1960	4	UHRF1BP1	6	34826039	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	329659	34826039	136289028	922	32572											
GLP1R	2740	broad.mit.edu	37	chr6	39053883	39053883	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctccctggggtccttgcTgcaggccgggtggccaatcc	14	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39053883	C	C	39053883	1	2	15	0	1	0	0	0	0	0	0	0	6516	1595	55	5		5	GLP1R	6	39053883	3'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	4227844	39053883	132061184	923	32573											
KIF6	221458	broad.mit.edu	37	chr6	39507930	39507930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgaattcacgtctatcCatgccagccaagtggagagc	10	11	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39507930	A	A	39507930	3	1	15	1	0	0	0	0	1	0	0	0	8378	594	21	2	994	2	KIF6	6	39507930	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	454047	39507930	131607137	924	32574											
PGC	5225	broad.mit.edu	37	chr6	41704543	41704543	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatacaatgccctaggagggTgcagggtcaagaggaagagg	17	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41704543	C	C	41704543	1	2	15	0	1	0	0	0	0	0	0	0	11880	1711	59	5		5	PGC	6	41704543	3'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	2196613	41704543	129410524	925	32575											
PRPH2	5961	broad.mit.edu	37	chr6	42689396	42689396	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcacccgatggagaggaaaAggcactgggtgcggggagag	19	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42689396	T	T	42689396	1	4	15	0	1	0	0	0	0	0	0	0	12683	87	3	5		5	PRPH2	6	42689396	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	984853	42689396	128425671	926	32576											
KLC4	89953	broad.mit.edu	37	chr6	43034679	43034679	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccttccaaagggaaggaggGaaggagaaggcttgcgggtt	17	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43034679	A	A	43034679	1	1	15	0	1	0	0	0	0	0	0	0	8407	1189	41	4		4	KLC4	6	43034679	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	345283	43034679	128080388	927	32577											
PTK7	5754	broad.mit.edu	37	chr6	43109784	43109784	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgattcagtggaaaggcaaGgaccgcatcctggaccccac	11	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43109784	C	C	43109784	3	2	15	1	0	0	0	0	1	0	0	0	12871	991	35	4	1930	4	PTK7	6	43109784	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	75105	43109784	128005283	928	32578											
YIPF3	25844	broad.mit.edu	37	chr6	43481021	43481021	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgcaggggctgttcctgtCtcactccaccattgtatcct	8	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43481021	A	A	43481021	1	1	15	0	1	0	0	0	0	0	0	0	17606	928	32	3		3	YIPF3	6	43481021	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	371237	43481021	127634046	929	32579											
C6orf223	221416	broad.mit.edu	37	chr6	43970830	43970830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgctgtcatccgcggcGctccgcggcgctgggccaac	14	19	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43970830	T	T	43970830	2	4	15	1	0	0	0	0	0	0	0	1	2380	1074	38	3		3	C6orf223	6	43970830	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	489809	43970830	127144237	930	32580											
CAPN11	11131	broad.mit.edu	37	chr6	44149082	44149082	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggcactaaaggggcagccTccaggggtgaggaaaagagg	18	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44149082	A	A	44149082	1	1	15	0	1	0	0	0	0	0	0	0	2650	1566	54	5		5	CAPN11	6	44149082	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	178252	44149082	126965985	931	32581											
HSP90AB1	3326	broad.mit.edu	37	chr6	44217663	44217663	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcatcctgtctgtaaagcAgttcttcacagcagttctgc	10	11	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44217663	C	C	44217663	1	2	15	0	1	0	0	0	0	0	0	0	7471	203	7	5		5	HSP90AB1	6	44217663	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	68581	44217663	126897404	932	32582											
RUNX2	860	broad.mit.edu	37	chr6	45479973	45479973	+	Intron	DEL	T	-	-													actaaagatttttctttttcTttttcccagaccccaggcag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45479973	-	-	45479973	6	5	15	0	1	1	0	1	0	0	0	0	13859	1624	56	0		0	RUNX2	6	45479973	Intron	DEL	T	TCGA-05-4410-01A-21D-1855-08	1262310	45479973	125635094	933	32583											
CD2AP	23607	broad.mit.edu	37	chr6	47544176	47544176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaccattagggaaagctGggtaactgtaaatggaaact	11	5	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47544176	T	T	47544176	1	4	15	0	1	0	0	0	0	0	0	0	3024	1363	47	2		2	CD2AP	6	47544176	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2064203	47544176	123570891	934	32584											
GPR115	221393	broad.mit.edu	37	chr6	47682493	47682493	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatttatggaatattggtCattttccgtaggatgatgaa	9	4	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47682493	T	T	47682493	2	4	15	1	0	0	0	0	0	0	0	1	6697	813	29	4		4	GPR115	6	47682493	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	138317	47682493	123432574	935	32585											
DEFB110	245913	broad.mit.edu	37	chr6	49986799	49986799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctattctgcactctctcCtcaagtccaagctaccatac	3	16	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49986799	A	A	49986799	3	1	15	1	0	0	0	0	1	0	0	0	4439	681	24	2	248	2	DEFB110	6	49986799	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2304306	49986799	121128268	936	32586											
TFAP2D	83741	broad.mit.edu	37	chr6	50686891	50686891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtaacaacatgttaacCctagacattcttctcctatc	3	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50686891	A	A	50686891	1	1	15	0	1	0	0	0	0	0	0	0	15913	638	22	2		2	TFAP2D	6	50686891	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	700092	50686891	120428176	937	32587											
TFAP2D	83741	broad.mit.edu	37	chr6	50696781	50696781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatttctgctaactgatacCataccctcaacccttagtca	4	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50696781	A	A	50696781	1	1	15	0	1	0	0	0	0	0	0	0	15913	609	21	2		2	TFAP2D	6	50696781	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	9890	50696781	120418286	938	32588											
TFAP2B	7021	broad.mit.edu	37	chr6	50803856	50803856	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtctgtcaacaccggcgaGgtgttttgctccgtcccagg	12	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50803856	C	C	50803856	3	2	15	1	0	0	0	0	1	0	0	0	15911	991	35	4	698	4	TFAP2B	6	50803856	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	107075	50803856	120311211	939	32589											
PKHD1	5314	broad.mit.edu	37	chr6	51619799	51619799	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcacaaatcatctattaactCcagagcaagaaaaggaaatc	6	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51619799	G	G	51619799	1	3	15	0	1	0	0	0	0	0	0	0	12066	870	30	4		4	PKHD1	6	51619799	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	815943	51619799	119495268	940	32590											
GSTA1	2938	broad.mit.edu	37	chr6	52657827	52657828	+	Intron	INS	-	A	A													tcaggaacacatgcacacccINSaggctaggacccctgcttct							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52657828	A	A	52657827	6	5	15	0	1	1	1	0	0	0	0	0	6896	609	21	0		0	GSTA1	6	52657827	Intron	INS	-	TCGA-05-4410-01A-21D-1855-08	1038028	52657827	118457240	941	32591											
GCLC	2729	broad.mit.edu	37	chr6	53379289	53379289	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatgtcggatatttcttgtTaaggtactaaaacagacaac	7	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53379289	A	A	53379289	3	1	15	1	0	0	0	0	1	0	0	0	6357	1751	61	5	1394	5	GCLC	6	53379289	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	721462	53379289	117735778	942	32592											
HCRTR2	3062	broad.mit.edu	37	chr6	55145222	55145222	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatagtgctgcgaatccaaTtatttataattttctcagtg	6	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55145222	A	A	55145222	3	1	15	1	0	0	0	0	1	0	0	0	7069	1493	52	5	1107	5	HCRTR2	6	55145222	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1765933	55145222	115969845	943	32593											
HMGCLL1	54511	broad.mit.edu	37	chr6	55364081	55364081	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttcatatggacagcccaGagcacaagacacatacctaa	6	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55364081	T	T	55364081	3	4	15	1	0	0	0	0	1	0	0	0	7297	933	33	3	479	3	HMGCLL1	6	55364081	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	218859	55364081	115750986	944	32594											
DST	667	broad.mit.edu	37	chr6	56473623	56473623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaaagtacttctttgtaCcatatctattaaagaaacct	4	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56473623	A	A	56473623	1	1	15	0	1	0	0	0	0	0	0	0	4823	522	18	3		3	DST	6	56473623	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1109542	56473623	114641444	945	32595											
PRIM2	5558	broad.mit.edu	37	chr6	57398091	57398091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattacagggtacctgataaGtcttccacttaacttaaaac	5	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398091	T	T	57398091	1	4	15	0	1	0	0	0	0	0	0	0	12597	1044	36	3		3	PRIM2	6	57398091	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	924468	57398091	113716976	946	32596											
KHDRBS2	202559	broad.mit.edu	37	chr6	62604730	62604730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggaggaatggcacccCcacggcccctaagagaaaca	14	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62604730	A	A	62604730	3	1	15	1	0	0	0	0	1	0	0	0	8217	623	22	2	445	2	KHDRBS2	6	62604730	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5206639	62604730	108510337	947	32597											
EYS	346007	broad.mit.edu	37	chr6	66063486	66063486	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaccaacatggattttTtgtgcaccctggaatgcata	7	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66063486	G	G	66063486	3	3	15	1	0	0	0	0	1	0	0	0	5375	1850	64	5	8212	5	EYS	6	66063486	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	3458756	66063486	105051581	948	32598											
EYS	346007	broad.mit.edu	37	chr6	66115103	66115103	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtcagtaccattctgacaTggtactaatgaaaactcact	6	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66115103	A	A	66115103	2	1	15	1	0	0	0	0	0	0	0	1	5375	1451	51	5		5	EYS	6	66115103	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	51617	66115103	104999964	949	32599											
EYS	346007	broad.mit.edu	37	chr6	66115229	66115229	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaaaaagcagagaaacAcaaggttttgctgacacctc	7	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66115229	G	G	66115229	2	3	15	1	0	0	0	0	0	0	0	1	5375	157	6	5		5	EYS	6	66115229	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	126	66115229	104999838	950	32600											
BAI3	577	broad.mit.edu	37	chr6	69949002	69949002	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaagttgggtaacttttCtctctctggctaggtacata	8	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69949002	T	T	69949002	1	4	15	0	1	0	0	0	0	0	0	0	1305	928	32	4		4	BAI3	6	69949002	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3833773	69949002	101166065	951	32601											
BAI3	577	broad.mit.edu	37	chr6	70064120	70064120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaatgtgttccccctcccCacaggttcaggatgcattta	7	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70064120	A	A	70064120	1	1	15	0	1	0	0	0	0	0	0	0	1305	609	21	2		2	BAI3	6	70064120	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	115118	70064120	101050947	952	32602											
COL9A1	1297	broad.mit.edu	37	chr6	70944628	70944628	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggccctctcaagccaggttCcccaggattacctgcctgga	10	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70944628	A	A	70944628	4	1	15	1	0	0	0	0	0	1	0	0	3739	864	30	3	657	3	COL9A1	6	70944628	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	880508	70944628	100170439	953	32603											
FAM135A	57579	broad.mit.edu	37	chr6	71138169	71138169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttgcataagatgtacaGtttaaatttaaatttaatta	4	2	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71138169	T	T	71138169	1	4	15	0	1	0	0	0	0	0	0	0	5494	1044	36	3		3	FAM135A	6	71138169	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	193541	71138169	99976898	954	32604											
SMAP1	60682	broad.mit.edu	37	chr6	71464617	71464617	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtatatgtatgtatgtGtatgtatgtgcaggaatcac	11	3	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71464617	T	T	71464617	1	4	15	0	1	0	0	0	0	0	0	0	14880	1392	48	3		3	SMAP1	6	71464617	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	326448	71464617	99650450	955	32605											
KCNQ5	56479	broad.mit.edu	37	chr6	73904298	73904298	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccttttgaatgtgaacagAcatctgactatcaaagccct	6	11	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73904298	G	G	73904298	3	3	15	1	0	0	0	0	1	0	0	0	8156	275	10	5	2075	5	KCNQ5	6	73904298	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	2439681	73904298	97210769	956	32606											
COL12A1	1303	broad.mit.edu	37	chr6	75827165	75827165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaaaagattcaaagtcGtccacaatgaacacgtgccg	7	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75827165	T	T	75827165	3	4	15	1	0	0	0	0	1	0	0	0	3701	1136	40	3	1819	3	COL12A1	6	75827165	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1922867	75827165	95287902	957	32607											
COL12A1	1303	broad.mit.edu	37	chr6	75875431	75875431	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accattcctggagcagatgtCcaataagccccaattgatgt	8	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75875431	A	A	75875431	3	1	15	1	0	0	0	0	1	0	0	0	3701	856	30	3	6628	3	COL12A1	6	75875431	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	48266	75875431	95239636	958	32608											
FILIP1	27145	broad.mit.edu	37	chr6	76124323	76124323	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctttccccataaagttcAttactcagagaggggaacag	8	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76124323	T	T	76124323	1	4	15	0	1	0	0	0	0	0	0	0	5951	232	8	5		5	FILIP1	6	76124323	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	248892	76124323	94990744	959	32609											
IMPG1	3617	broad.mit.edu	37	chr6	76715026	76715026	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgaactgaattgtcccCacatccaaagattgttcttc	6	11	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76715026	A	A	76715026	2	1	15	1	0	0	0	0	0	0	0	1	7798	581	21	2		2	IMPG1	6	76715026	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	590703	76715026	94400041	960	32610											
IMPG1	3617	broad.mit.edu	37	chr6	76715292	76715292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccccacccaaagccattGttacatgccttgcaaagaga	6	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76715292	T	T	76715292	1	4	15	0	1	0	0	0	0	0	0	0	7798	1392	48	3		3	IMPG1	6	76715292	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	266	76715292	94399775	961	32611											
BCKDHB	594	broad.mit.edu	37	chr6	80878646	80878646	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggatctttttaactgtGgaagcctcactatccggtcc	10	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80878646	T	T	80878646	4	4	15	1	0	0	0	0	0	1	0	0	1365	1349	47	2	550	2	BCKDHB	6	80878646	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4163354	80878646	90236421	962	32612											
PRSS35	167681	broad.mit.edu	37	chr6	84233730	84233730	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaagggtagggttgttgaaGatgaggaataaaagtggagg	17	1	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84233730	C	C	84233730	3	2	15	1	0	0	0	0	1	0	0	0	12730	933	33	4	572	4	PRSS35	6	84233730	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3355084	84233730	86881337	963	32613											
TBX18	9096	broad.mit.edu	37	chr6	85446572	85446572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaggaccccaagaaacttCcttgggaagaaacaattttc	9	9	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85446572	A	A	85446572	3	1	15	1	0	0	0	0	1	0	0	0	15775	855	30	3	172	3	TBX18	6	85446572	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1212842	85446572	85668495	964	32614											
HTR1E	3354	broad.mit.edu	37	chr6	87725964	87725964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcattcattttatcctgGctgccatttttcatcaaaga	7	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87725964	T	T	87725964	3	4	15	1	0	0	0	0	1	0	0	0	7509	1212	42	3	914	3	HTR1E	6	87725964	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2279392	87725964	83389103	965	32615											
SPACA1	81833	broad.mit.edu	37	chr6	88773879	88773879	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctaatttttgtgctgaccAtaggagtcattatctgtgta	8	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88773879	G	G	88773879	3	3	15	1	0	0	0	0	1	0	0	0	15086	217	8	5	695	5	SPACA1	6	88773879	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1047915	88773879	82341188	966	32616											
EPHA7	2045	broad.mit.edu	37	chr6	93956568	93956568	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttcgaatcattttgtctaGaattccaactatctgttcaa	5	8	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93956568	C	C	93956568	3	2	15	1	0	0	0	0	1	0	0	0	5214	933	33	4	340	4	EPHA7	6	93956568	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5182689	93956568	77158499	967	32617											
EPHA7	2045	broad.mit.edu	37	chr6	93967841	93967841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaacaaccccttccaaatGgacaacattcgggtggtcaa	8	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93967841	T	T	93967841	3	4	15	1	0	0	0	0	1	0	0	0	5214	1348	47	2	938	2	EPHA7	6	93967841	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	11273	93967841	77147226	968	32618											
GPR63	81491	broad.mit.edu	37	chr6	97247514	97247514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgctggaatggtggagGgagtgtaatattcatgtagg	17	2	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97247514	T	T	97247514	3	4	15	1	0	0	0	0	1	0	0	0	6769	1232	43	2	1169	2	GPR63	6	97247514	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3279673	97247514	73867553	969	32619											
KLHL32	114792	broad.mit.edu	37	chr6	97562151	97562151	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctgtcgctatgaccccCgcagtaattcctgggcagag	11	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97562151	G	G	97562151	3	3	15	1	0	0	0	0	1	0	0	0	8457	652	23	4	1142	4	KLHL32	6	97562151	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	314637	97562151	73552916	970	32620											
MCHR2	84539	broad.mit.edu	37	chr6	100395638	100395638	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaagtctttcacttacCtgtccacactcattacagtc	3	13	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100395638	T	T	100395638	3	4	15	1	0	0	0	0	1	0	0	0	9476	695	24	4	646	4	MCHR2	6	100395638	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2833487	100395638	70719429	971	32621											
MCHR2	84539	broad.mit.edu	37	chr6	100403903	100403903	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgaacagataatcccaaTcatggaagggaggatgactg	12	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100403903	C	C	100403903	3	2	15	1	0	0	0	0	1	0	0	0	9476	1435	50	5	921	5	MCHR2	6	100403903	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	8265	100403903	70711164	972	32622											
ASCC3	10973	broad.mit.edu	37	chr6	100978646	100978646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtttacttttaattttgCaaagaatccaagacaaaaag	5	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100978646	A	A	100978646	1	1	15	0	1	0	0	0	0	0	0	0	1037	725	25	3		3	ASCC3	6	100978646	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	574743	100978646	70136421	973	32623											
GRIK2	2898	broad.mit.edu	37	chr6	102372694	102372694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcttgcatgggtgcctctGtgcatgtaaccataatccag	10	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102372694	T	T	102372694	1	4	15	0	1	0	0	0	0	0	0	0	6840	1392	48	3		3	GRIK2	6	102372694	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1394048	102372694	68742373	974	32624											
GRIK2	2898	broad.mit.edu	37	chr6	102483213	102483213	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacttatatttattttcttCagaaatcaaaaatctccacg	2	9	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102483213	A	A	102483213	1	1	15	0	1	0	0	0	0	0	0	0	6840	841	29	3		3	GRIK2	6	102483213	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	110519	102483213	68631854	975	32625											
HACE1	57531	broad.mit.edu	37	chr6	105198211	105198211	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataagaactgatgtttttcCttaccaattcatattcatca	3	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105198211	T	T	105198211	1	4	15	0	1	0	0	0	0	0	0	0	7006	696	24	4		4	HACE1	6	105198211	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2714998	105198211	65916856	976	32626											
SOBP	55084	broad.mit.edu	37	chr6	107824904	107824904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaactccttggctggtatgGctatgataaggttgaattaa	11	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107824904	T	T	107824904	3	4	15	1	0	0	0	0	1	0	0	0	15026	1203	42	3	146	3	SOBP	6	107824904	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2626693	107824904	63290163	977	32627											
ARMC2	84071	broad.mit.edu	37	chr6	109190162	109190162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggctgcctcccagcggGcccttctgccggacagatcc	12	17	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109190162	T	T	109190162	3	4	15	1	0	0	0	0	1	0	0	0	955	1203	42	3	437	3	ARMC2	6	109190162	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1365258	109190162	61924905	978	32628											
C6orf182	285753	broad.mit.edu	37	chr6	109480315	109480315	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctgaaaaggtgagagggGataaaatgaagatagtcgtt	15	2	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109480315	T	T	109480315	1	4	15	0	1	0	0	0	0	0	0	0	2369	1189	41	3		3	C6orf182	6	109480315	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	290153	109480315	61634752	979	32629											
GPR6	2830	broad.mit.edu	37	chr6	110300858	110300858	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctattactcgcgccggacCctgttgggcgtgcacctcct	10	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110300858	A	A	110300858	2	1	15	1	0	0	0	0	0	0	0	1	6766	610	22	2		2	GPR6	6	110300858	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	820543	110300858	60814209	980	32630											
LAMA4	3910	broad.mit.edu	37	chr6	112496655	112496655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaagttcatgctcttccCcataatagagcatcttgttg	8	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112496655	A	A	112496655	3	1	15	1	0	0	0	0	1	0	0	0	8680	623	22	2	4370	2	LAMA4	6	112496655	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2195797	112496655	58618412	981	32631											
MARCKS	4082	broad.mit.edu	37	chr6	114181761	114181761	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggcggcagagtaaaagagCaagcttttgtgagataatcg	14	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114181761	G	G	114181761	1	3	15	0	1	0	0	0	0	0	0	0	9401	725	25	4		4	MARCKS	6	114181761	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	1685106	114181761	56933306	982	32632											
ROS1	6098	broad.mit.edu	37	chr6	117631202	117631202	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaatcccctctaatgttTgatgattctgtcagcattac	5	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117631202	A	A	117631202	1	1	15	0	1	0	0	0	0	0	0	0	13642	1827	63	5		5	ROS1	6	117631202	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	3449441	117631202	53483865	983	32633											
ROS1	6098	broad.mit.edu	37	chr6	117706999	117706999	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctttcgtgtcactgtagtaGaggctgttgttataccaatc	9	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117706999	C	C	117706999	2	2	15	1	0	0	0	0	0	0	0	1	13642	929	33	4		4	ROS1	6	117706999	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	75797	117706999	53408068	984	32634											
GOPC	57120	broad.mit.edu	37	chr6	117753475	117753475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgttttccagcctgggCaaaaagagtgaaactctgtc	9	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117753475	A	A	117753475	1	1	15	0	1	0	0	0	0	0	0	0	6637	725	25	3		3	GOPC	6	117753475	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	46476	117753475	53361592	985	32635											
DCBLD1	285761	broad.mit.edu	37	chr6	117841007	117841007	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggaagtatgactgttccCaaagaactcttgttgaacac	9	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117841007	T	T	117841007	2	4	15	1	0	0	0	0	0	0	0	1	4313	581	21	4		4	DCBLD1	6	117841007	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	87532	117841007	53274060	986	32636											
TRDN	10345	broad.mit.edu	37	chr6	123698856	123698856	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccagcaacagtggtcttaCtcacctgagtgttctttctt	7	11	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123698856	G	G	123698856	1	3	15	0	1	0	0	0	0	0	0	0	16592	580	20	4		4	TRDN	6	123698856	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5857849	123698856	47416211	987	32637											
NKAIN2	154215	broad.mit.edu	37	chr6	124676569	124676570	+	Intron	DNP	CC	TA	TA													taagtaaggcagagtctcatCctgttctgcttgcttagctg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	124676570	TA	TA	124676569	1	4	15	0	1	0	0	0	0	0	0	0	10531	870	30	4		4	NKAIN2	6	124676569	Intron	DNP	CC	TCGA-05-4410-01A-21D-1855-08	977713	124676569	46438498	988	32638											
NKAIN2	154215	broad.mit.edu	37	chr6	125139561	125139561	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggtggctttgactcttaTggctatcaagggcctcagaa	11	8	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125139561	C	C	125139561	2	2	15	1	0	0	0	0	0	0	0	1	10531	1471	51	5		5	NKAIN2	6	125139561	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	462992	125139561	45975506	989	32639											
THEMIS	387357	broad.mit.edu	37	chr6	128040881	128040881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttctttctcttcatccaCcaaatcattctgactaccaa	1	15	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128040881	A	A	128040881	3	1	15	1	0	0	0	0	1	0	0	0	15983	507	18	3	87	3	THEMIS	6	128040881	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2901320	128040881	43074186	990	32640											
LAMA2	3908	broad.mit.edu	37	chr6	129468102	129468102	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctctggattgctttttgcAgtattactactcggtcaagg	9	9	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129468102	T	T	129468102	5	4	15	1	0	0	0	0	0	0	1	0	8678	202	7	5	840	5	LAMA2	6	129468102	Splice_Site	SNP	A	TCGA-05-4410-01A-21D-1855-08	1427221	129468102	41646965	991	32641											
TMEM200A	114801	broad.mit.edu	37	chr6	130761821	130761821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgttcttggatattggcCccaaaaagaacattttattg	9	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130761821	A	A	130761821	3	1	15	1	0	0	0	0	1	0	0	0	16246	623	22	2	256	2	TMEM200A	6	130761821	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1293719	130761821	40353246	992	32642											
EPB41L2	2037	broad.mit.edu	37	chr6	131211391	131211391	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctgacctcatgggattaGagaaagatgaatgaaaatca	9	5	3	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131211391	C	C	131211391	1	2	15	0	1	0	0	0	0	0	0	0	5195	957	33	4		4	EPB41L2	6	131211391	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	449570	131211391	39903676	993	32643											
MOXD1	26002	broad.mit.edu	37	chr6	132694184	132694184	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctcatgagagcactttccTtaccactgagttgagtttaa	8	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132694184	A	A	132694184	1	1	15	0	1	0	0	0	0	0	0	0	9814	1624	56	5		5	MOXD1	6	132694184	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1482793	132694184	38420883	994	32644											
CCDC28A	25901	broad.mit.edu	37	chr6	139100941	139100941	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatagcctaaaaagcctaaAtttcatcgtctttacagagt	6	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139100941	C	C	139100941	1	2	15	0	1	0	0	0	0	0	0	0	2829	116	4	5		5	CCDC28A	6	139100941	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	6406757	139100941	32014126	995	32645											
TXLNB	167838	broad.mit.edu	37	chr6	139564124	139564124	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagagcggcgtcagcactctCctgagaactgcctatttcgg	12	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139564124	A	A	139564124	4	1	15	1	0	0	0	0	0	1	0	0	16914	864	30	3	464	3	TXLNB	6	139564124	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	463183	139564124	31550943	996	32646											
AIG1	51390	broad.mit.edu	37	chr6	143654649	143654649	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagtctatgcagagactgAgggaaaattccactgtagcc	10	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143654649	T	T	143654649	1	4	15	0	1	0	0	0	0	0	0	0	429	319	11	5		5	AIG1	6	143654649	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	4090525	143654649	27460418	997	32647											
UTRN	7402	broad.mit.edu	37	chr6	145069549	145069549	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagggagctatggatgacCtggacgctgacatgaaggag	16	7	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145069549	T	T	145069549	2	4	15	1	0	0	0	0	0	0	0	1	17230	680	24	4		4	UTRN	6	145069549	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1414900	145069549	26045518	998	32648											
RAET1E	135250	broad.mit.edu	37	chr6	150210584	150210584	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatacttttccagccctctGtctttcttccatgtctcctt	3	14	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150210584	C	C	150210584	3	2	15	1	0	0	0	0	1	0	0	0	13107	1368	48	4	277	4	RAET1E	6	150210584	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5141035	150210584	20904483	999	32649											
RMND1	55005	broad.mit.edu	37	chr6	151766404	151766404	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actggtttagcatgagcaatGatcactaagcacgagagcca	10	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151766404	A	A	151766404	1	1	15	0	1	0	0	0	0	0	0	0	13507	1305	45	4		4	RMND1	6	151766404	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1555820	151766404	19348663	1000	32650											
C6orf97	80129	broad.mit.edu	37	chr6	151917459	151917459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaatccctgtttgCatcaaaccagctaaagacac	4	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151917459	A	A	151917459	1	1	15	0	1	0	0	0	0	0	0	0	2399	725	25	3		3	C6orf97	6	151917459	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	151055	151917459	19197608	1001	32651											
RGS17	26575	broad.mit.edu	37	chr6	153332638	153332638	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagttctccaggaactcAgtttctgatgttatttaact	7	8	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153332638	G	G	153332638	1	3	15	0	1	0	0	0	0	0	0	0	13408	203	7	5		5	RGS17	6	153332638	3'UTR	SNP	A	TCGA-05-4410-01A-21D-1855-08	1415179	153332638	17782429	1002	32652											
NOX3	50508	broad.mit.edu	37	chr6	155728185	155728185	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagatatacggtactgcaGattaacttttcactccagca	8	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155728185	T	T	155728185	1	4	15	0	1	0	0	0	0	0	0	0	10652	957	33	3		3	NOX3	6	155728185	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2395547	155728185	15386882	1003	32653											
ARID1B	57492	broad.mit.edu	37	chr6	157505488	157505488	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgcctttgagtgcaagatcGaacgtggggaggagcccccg	15	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157505488	A	A	157505488	3	1	15	1	0	0	0	0	1	0	0	0	916	1059	37	4	3519	4	ARID1B	6	157505488	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1777303	157505488	13609579	1004	32654											
SNX9	51429	broad.mit.edu	37	chr6	158358615	158358615	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggaggcagatgtgcgcAgtagtcagtattggttttat	14	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158358615	T	T	158358615	1	4	15	0	1	0	0	0	0	0	0	0	15023	203	7	5		5	SNX9	6	158358615	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	853127	158358615	12756452	1005	32655											
IGF2R	3482	broad.mit.edu	37	chr6	160523695	160523695	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctgttgctctacaagaaGgagaggaggtaagcgggtgg	17	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160523695	C	C	160523695	3	2	15	1	0	0	0	0	1	0	0	0	7646	991	35	4	7169	4	IGF2R	6	160523695	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2165080	160523695	10591372	1006	32656											
SLC22A3	6581	broad.mit.edu	37	chr6	160858107	160858107	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacctctatatagactttttCatctcgggcgtggtggaact	9	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160858107	T	T	160858107	2	4	15	1	0	0	0	0	0	0	0	1	14569	825	29	4		4	SLC22A3	6	160858107	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	334412	160858107	10256960	1007	32657											
LPA	4018	broad.mit.edu	37	chr6	161010785	161010785	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaaactgagtaatttccaGaacacagaagcatgagaaaa	7	7	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161010785	T	T	161010785	1	4	15	0	1	0	0	0	0	0	0	0	8990	957	33	3		3	LPA	6	161010785	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	152678	161010785	10104282	1008	32658											
LPA	4018	broad.mit.edu	37	chr6	161021898	161021898	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcagtgggggtatccatGgcttttcatcccagcatcca	11	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161021898	C	C	161021898	1	2	15	0	1	0	0	0	0	0	0	0	8990	1363	47	4		4	LPA	6	161021898	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	11113	161021898	10093169	1009	32659											
PARK2	5071	broad.mit.edu	37	chr6	161969909	161969909	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagcccaggccattgccccCttcgcaggtgactttcctct	8	17	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161969909	G	G	161969909	3	3	15	1	0	0	0	0	1	0	0	0	11543	681	24	4	353	4	PARK2	6	161969909	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	948011	161969909	9145158	1010	32660											
PARK2	5071	broad.mit.edu	37	chr6	162394430	162394430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcagaggtggggtgtgctCcacatttaaagaaaaattcc	11	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162394430	A	A	162394430	3	1	15	1	0	0	0	0	1	0	0	0	11543	855	30	3	787	3	PARK2	6	162394430	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	424521	162394430	8720637	1011	32661											
C6orf118	168090	broad.mit.edu	37	chr6	165714965	165714965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggagctctgccccgagaGgtttgccccagagctgtgcc	13	16	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165714965	T	T	165714965	1	4	15	0	1	0	0	0	0	0	0	0	2346	1015	35	2		2	C6orf118	6	165714965	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3320535	165714965	5400102	1012	32662											
THBS2	7058	broad.mit.edu	37	chr6	169629714	169629714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcgtcatcatcacaggcatCgccaatcccgtccttgtcaa	6	15	4	0	rs61736310		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169629714	T	T	169629714	3	4	15	1	0	0	0	0	1	0	0	0	15977	884	31	4	1342	4	THBS2	6	169629714	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3914749	169629714	1485353	1013	32663											
WDR27	253769	broad.mit.edu	37	chr6	170033053	170033053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttactcactttattttggCagatttgatggacaggccgt	9	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170033053	A	A	170033053	3	1	15	1	0	0	0	0	1	0	0	0	17411	710	25	3	380	3	WDR27	6	170033053	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	403339	170033053	1082014	1014	32664											
DLL1	28514	broad.mit.edu	37	chr6	170592564	170592564	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgatgatgctgactgagatGtccttctcacgctggcagtt	11	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170592564	A	A	170592564	2	1	15	1	0	0	0	0	0	0	0	1	4606	1368	48	4		4	DLL1	6	170592564	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	559511	170592564	522503	1015	32665											
FAM120B	84498	broad.mit.edu	37	chr6	170627006	170627006	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataactgtcttgggattctGggggaagacactgattacct	11	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170627006	T	T	170627006	2	4	15	1	0	0	0	0	0	0	0	1	5463	1335	47	2		2	FAM120B	6	170627006	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	34442	170627006	488061	1016	32666											
PDGFA	5154	broad.mit.edu	37	chr7	550517	550517	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcagcagccggtgcagcGtttcacctccacgcacgggg	14	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	550517	A	A	550517	3	1	15	1	0	0	0	0	1	0	0	0	11751	1145	40	4	280	4	PDGFA	7	550517	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08		550517	158588146	1017	32667											
CYP2W1	54905	broad.mit.edu	37	chr7	1028168	1028168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatctcaggttctgaaggCggctgtggtggctgctcctg	15	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1028168	A	A	1028168	1	1	15	0	1	0	0	0	0	0	0	0	4209	783	27	3		3	CYP2W1	7	1028168	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	477651	1028168	158110495	1018	32668											
MICALL2	79778	broad.mit.edu	37	chr7	1474410	1474410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccttcccttccactggcCacaatccgccctgggcctcc	6	21	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1474410	A	A	1474410	1	1	15	0	1	0	0	0	0	0	0	0	9667	609	21	2		2	MICALL2	7	1474410	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	446242	1474410	157664253	1019	32669											
INTS1	26173	broad.mit.edu	37	chr7	1538688	1538688	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagccgcaggtggaggtgaGgagccgcaggaggttcctgg	19	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1538688	A	A	1538688	3	1	15	1	0	0	0	0	1	0	0	0	7845	1000	35	4	5676	4	INTS1	7	1538688	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	64278	1538688	157599975	1020	32670											
TMEM184A	202915	broad.mit.edu	37	chr7	1589783	1589783	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttacagaagcgcaggaacccGatggagtaggtcatgccccg	13	11	1	1	rs139449337	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1589783	T	T	1589783	2	4	15	1	0	0	0	0	0	0	0	1	16227	1048	37	3		3	TMEM184A	7	1589783	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	51095	1589783	157548880	1021	32671											
SDK1	221935	broad.mit.edu	37	chr7	4007027	4007027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccattctaaggtgtgagGtgtccggggctcccaaaccc	12	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4007027	T	T	4007027	3	4	15	1	0	0	0	0	1	0	0	0	14081	1261	44	3	1545	3	SDK1	7	4007027	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2417244	4007027	155131636	1022	32672											
SDK1	221935	broad.mit.edu	37	chr7	4213692	4213692	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttggtgctgtgccctgGgagctgcctgggttcgtctt	15	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4213692	A	A	4213692	1	1	15	0	1	0	0	0	0	0	0	0	14081	1247	43	4		4	SDK1	7	4213692	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	206665	4213692	154924971	1023	32673											
FOXK1	221937	broad.mit.edu	37	chr7	4796696	4796696	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgttcccaggaggagcctggGaaggggtccttttggcgaat	16	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4796696	T	T	4796696	2	4	15	1	0	0	0	0	0	0	0	1	6074	1161	41	3		3	FOXK1	7	4796696	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	583004	4796696	154341967	1024	32674											
RADIL	55698	broad.mit.edu	37	chr7	4874576	4874576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggcaggggctgggcctGcgcggggtccttgaatagca	20	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4874576	T	T	4874576	3	4	15	1	0	0	0	0	1	0	0	0	13105	1328	46	3	2197	3	RADIL	7	4874576	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	77880	4874576	154264087	1025	32675											
MMD2	221938	broad.mit.edu	37	chr7	4965226	4965226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgccatccgaattcccaGgaagcctgaagaccttactt	9	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4965226	A	A	4965226	1	1	15	0	1	0	0	0	0	0	0	0	9737	1015	35	4		4	MMD2	7	4965226	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	90650	4965226	154173437	1026	32676											
TNRC18	84629	broad.mit.edu	37	chr7	5410699	5410699	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggcagtggcagcggcgactCcagaggcggcagctctgtgg	19	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5410699	A	A	5410699	4	1	15	1	0	0	0	0	0	1	0	0	16462	864	30	3	5460	3	TNRC18	7	5410699	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	445473	5410699	153727964	1027	32677											
TNRC18	84629	broad.mit.edu	37	chr7	5427458	5427458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcaccagagccctcgCgcccgaaagctttggcgctc	12	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5427458	A	A	5427458	3	1	15	1	0	0	0	0	1	0	0	0	16462	768	27	3	7013	3	TNRC18	7	5427458	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	16759	5427458	153711205	1028	32678											
RNF216	54476	broad.mit.edu	37	chr7	5680851	5680851	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcctggtgagcggggatgTtggcagaaatggtcatatcc	15	8	1	2	rs141635295		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5680851	A	A	5680851	3	1	15	1	0	0	0	0	1	0	0	0	13591	1722	60	5	467	5	RNF216	7	5680851	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	253393	5680851	153457812	1029	32679											
COL28A1	340267	broad.mit.edu	37	chr7	7415223	7415223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattacaatcagcactggacCatttgatttaatccttccac	4	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7415223	A	A	7415223	1	1	15	0	1	0	0	0	0	0	0	0	3718	609	21	2		2	COL28A1	7	7415223	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1734372	7415223	151723440	1030	32680											
GLCCI1	113263	broad.mit.edu	37	chr7	8099630	8099630	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggtcagaaataactccGttcattgagtttcaatttta	7	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8099630	C	C	8099630	1	2	15	0	1	0	0	0	0	0	0	0	6495	1160	40	4		4	GLCCI1	7	8099630	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	684407	8099630	151039033	1031	32681											
ICA1	3382	broad.mit.edu	37	chr7	8183563	8183563	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggttgattttcttcttctCttctttctcaactaattttt	3	9	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8183563	T	T	8183563	3	4	15	1	0	0	0	0	1	0	0	0	7547	922	32	4	631	4	ICA1	7	8183563	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	83933	8183563	150955100	1032	32682											
THSD7A	221981	broad.mit.edu	37	chr7	11581034	11581034	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccataaaaacataatagataCgtctgtcttaccatcactgt	4	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11581034	T	T	11581034	1	4	15	0	1	0	0	0	0	0	0	0	16002	551	19	4		4	THSD7A	7	11581034	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3397471	11581034	147557629	1033	32683											
TMEM195	392636	broad.mit.edu	37	chr7	15433788	15433788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaatcagttccaaaggaCcaaggttattgatgacctgt	9	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15433788	A	A	15433788	3	1	15	1	0	0	0	0	1	0	0	0	16240	507	18	3	743	3	TMEM195	7	15433788	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3852754	15433788	143704875	1034	32684											
HDAC9	9734	broad.mit.edu	37	chr7	18832988	18832988	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggacagtgacaccatttgGaatgagctacactcgtccgg	12	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18832988	A	A	18832988	4	1	15	1	0	0	0	0	0	1	0	0	7081	1183	41	4	2348	4	HDAC9	7	18832988	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3399200	18832988	140305675	1035	32685											
HDAC9	9734	broad.mit.edu	37	chr7	19015355	19015355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaacaactgctctgagttGgacgtatgtgagtattctga	10	7	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19015355	T	T	19015355	1	4	15	0	1	0	0	0	0	0	0	0	7081	1363	47	2		2	HDAC9	7	19015355	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	182367	19015355	140123308	1036	32686											
HDAC9	9734	broad.mit.edu	37	chr7	19015373	19015373	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggacgtatgtgagtattcTgattattactgctgtaatta	9	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19015373	C	C	19015373	1	2	15	0	1	0	0	0	0	0	0	0	7081	1595	55	5		5	HDAC9	7	19015373	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	18	19015373	140123290	1037	32687											
ABCB5	340273	broad.mit.edu	37	chr7	20685795	20685795	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaacaaggtgtcaggcctGgataatctttccttacctag	10	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20685795	T	T	20685795	1	4	15	0	1	0	0	0	0	0	0	0	44	1363	47	2		2	ABCB5	7	20685795	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	1670422	20685795	138452868	1038	32688											
ABCB5	340273	broad.mit.edu	37	chr7	20691247	20691247	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcatggagtttcctaatGtgagtacactgtgcagcctg	10	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20691247	T	T	20691247	5	4	15	1	0	0	0	0	0	0	1	0	44	1391	48	3	1583	3	ABCB5	7	20691247	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	5452	20691247	138447416	1039	32689											
ABCB5	340273	broad.mit.edu	37	chr7	20721145	20721145	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggcgagcaaaggtcggacTacaatcgtggtagcacaccg	13	10	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20721145	C	C	20721145	2	2	15	1	0	0	0	0	0	0	0	1	44	1509	53	5		5	ABCB5	7	20721145	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	29898	20721145	138417518	1040	32690											
DNAH11	8701	broad.mit.edu	37	chr7	21640486	21640486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgtcttccgatgaaatgGatgctcatgcaaatgaagaa	10	7	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21640486	T	T	21640486	3	4	15	1	0	0	0	0	1	0	0	0	4639	1174	41	3	3255	3	DNAH11	7	21640486	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	919341	21640486	137498177	1041	32691											
IGF2BP3	10643	broad.mit.edu	37	chr7	23508209	23508209	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggccgagttcagcggctctCcctgcccgaagacccgcaca	11	18	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23508209	A	A	23508209	1	1	15	0	1	0	0	0	0	0	0	0	7645	870	30	3		3	IGF2BP3	7	23508209	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1867723	23508209	135630454	1042	32692											
CBX3	11335	broad.mit.edu	37	chr7	26251814	26251814	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttggcattcttgtccagaaGatgaagctcaataattgttc	8	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26251814	T	T	26251814	3	4	15	1	0	0	0	0	1	0	0	0	2745	942	33	3	556	3	CBX3	7	26251814	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2743605	26251814	132886849	1043	32693											
HOXA10	3206	broad.mit.edu	37	chr7	27213050	27213050	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggccgaggacgacgcgtgCgcctcctcgtcgccctgcga	15	17	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27213050	A	A	27213050	2	1	15	1	0	0	0	0	0	0	0	1	7356	755	27	3		3	HOXA10	7	27213050	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	961236	27213050	131925613	1044	32694											
CHN2	1124	broad.mit.edu	37	chr7	29252202	29252202	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtcccagtcaagaaacAgaagaccagaactgtgtttt	10	9	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29252202	G	G	29252202	1	3	15	0	1	0	0	0	0	0	0	0	3394	203	7	5		5	CHN2	7	29252202	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2039152	29252202	129886461	1045	32695											
SCRN1	9805	broad.mit.edu	37	chr7	29980513	29980513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagagagtgcaaagcccCataagttaaaaatatactta	7	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29980513	A	A	29980513	1	1	15	0	1	0	0	0	0	0	0	0	14051	609	21	2		2	SCRN1	7	29980513	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	728311	29980513	129158150	1046	32696											
NOD1	10392	broad.mit.edu	37	chr7	30490920	30490920	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctaggtctagggccagccGcttggggaagtgatgcagga	17	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30490920	T	T	30490920	2	4	15	1	0	0	0	0	0	0	0	1	10611	1086	38	3		3	NOD1	7	30490920	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	510407	30490920	128647743	1047	32697											
FAM188B	84182	broad.mit.edu	37	chr7	30921765	30921765	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccctttccctggggacgGcatttcacatcaggcctctc	9	16	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30921765	A	A	30921765	1	1	15	0	1	0	0	0	0	0	0	0	5561	1218	42	4		4	FAM188B	7	30921765	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	430845	30921765	128216898	1048	32698											
GHRHR	2692	broad.mit.edu	37	chr7	31013852	31013852	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacctcactctgaggcccaGagaaggagagggacaggcca	13	13	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31013852	T	T	31013852	1	4	15	0	1	0	0	0	0	0	0	0	6437	957	33	3		3	GHRHR	7	31013852	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	92087	31013852	128124811	1049	32699											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31142997	31142997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtaggtgtggcacatgGggaggacagaactcactggg	17	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31142997	T	T	31142997	1	4	15	0	1	0	0	0	0	0	0	0	303	1247	43	2		2	ADCYAP1R1	7	31142997	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	129145	31142997	127995666	1050	32700											
CCDC129	223075	broad.mit.edu	37	chr7	31592719	31592719	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagagatcctgaagtgcacCaaaagcgcgtgggctccgct	13	11	0	3	rs147399119		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31592719	G	G	31592719	2	3	15	1	0	0	0	0	0	0	0	1	2790	581	21	4		4	CCDC129	7	31592719	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	449722	31592719	127545944	1051	32701											
PDE1C	5137	broad.mit.edu	37	chr7	31877505	31877505	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctggctgctgcagagcaGtcttcattgctttgatttgt	10	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31877505	A	A	31877505	3	1	15	1	0	0	0	0	1	0	0	0	11729	1029	36	4	875	4	PDE1C	7	31877505	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	284786	31877505	127261158	1052	32702											
FKBP9	11328	broad.mit.edu	37	chr7	33014286	33014286	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaggacagctgatcacaggGatggaccaggctcttgttgg	14	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33014286	C	C	33014286	2	2	15	1	0	0	0	0	0	0	0	1	5972	1161	41	4		4	FKBP9	7	33014286	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1136781	33014286	126124377	1053	32703											
BMPER	168667	broad.mit.edu	37	chr7	34014337	34014337	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtttgagggtgtgcagTatcaagaaggggaggaattt	17	2	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34014337	C	C	34014337	3	2	15	1	0	0	0	0	1	0	0	0	1474	1638	57	5	539	5	BMPER	7	34014337	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1000051	34014337	125124326	1054	32704											
NPSR1	387129	broad.mit.edu	37	chr7	34889208	34889208	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaggattccagaatgacgTtccgggagagaactgagagg	14	8	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34889208	A	A	34889208	3	1	15	1	0	0	0	0	1	0	0	0	10695	1725	60	5	1091	5	NPSR1	7	34889208	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	874871	34889208	124249455	1055	32705											
ANLN	54443	broad.mit.edu	37	chr7	36446030	36446030	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaattttcctctgcaagtgGagcatctgctaggatcaata	8	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36446030	C	C	36446030	3	2	15	1	0	0	0	0	1	0	0	0	694	1174	41	4	742	4	ANLN	7	36446030	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1556822	36446030	122692633	1056	32706											
ANLN	54443	broad.mit.edu	37	chr7	36478690	36478690	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccatgtcttttatactcCaactttagaaaatgctctgt	6	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36478690	T	T	36478690	1	4	15	0	1	0	0	0	0	0	0	0	694	609	21	4		4	ANLN	7	36478690	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	32660	36478690	122659973	1057	32707											
ELMO1	9844	broad.mit.edu	37	chr7	36895239	36895239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatctggatgttttccaGgtccaggaggcggagcttga	16	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36895239	T	T	36895239	3	4	15	1	0	0	0	0	1	0	0	0	5107	991	35	2	86	2	ELMO1	7	36895239	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	416549	36895239	122243424	1058	32708											
EPDR1	54749	broad.mit.edu	37	chr7	37960403	37960403	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaaagcggcagaggccaccGaagggacaggaagcactttg	14	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37960403	A	A	37960403	2	1	15	1	0	0	0	0	0	0	0	1	5205	1045	37	4		4	EPDR1	7	37960403	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1065164	37960403	121178260	1059	32709											
POU6F2	11281	broad.mit.edu	37	chr7	39500316	39500316	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagtcggccatctgcaggTaacgcgcgcctgcatgctgt	13	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39500316	A	A	39500316	5	1	15	1	0	0	0	0	0	0	1	0	12381	1652	57	5	1607	5	POU6F2	7	39500316	Splice_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	1539913	39500316	119638347	1060	32710											
CDK13	8621	broad.mit.edu	37	chr7	40027946	40027946	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacctcccctaaccccctcGaaacaactttagtgaaaaag	5	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40027946	T	T	40027946	1	4	15	0	1	0	0	0	0	0	0	0	3159	1073	37	3		3	CDK13	7	40027946	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	527630	40027946	119110717	1061	32711											
HECW1	23072	broad.mit.edu	37	chr7	43484130	43484130	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggacatccagcctgccccCagtgcagaagagctggccga	12	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43484130	G	G	43484130	2	3	15	1	0	0	0	0	0	0	0	1	7109	581	21	4		4	HECW1	7	43484130	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3456184	43484130	115654533	1062	32712											
HECW1	23072	broad.mit.edu	37	chr7	43548638	43548638	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcttcaacccttactatGgactctttgagtactcggca	7	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43548638	T	T	43548638	4	4	15	1	0	0	0	0	0	1	0	0	7109	1349	47	2	4023	2	HECW1	7	43548638	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	64508	43548638	115590025	1063	32713											
HECW1	23072	broad.mit.edu	37	chr7	43581559	43581559	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaacatcacagacatcttaGacctcactttcactgttaat	3	12	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43581559	C	C	43581559	3	2	15	1	0	0	0	0	1	0	0	0	7109	942	33	4	4304	4	HECW1	7	43581559	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	32921	43581559	115557104	1064	32714											
URGCP	55665	broad.mit.edu	37	chr7	43921480	43921480	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccctctccccagtccaatCtgttgccaaatcctgtagtt	5	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43921480	T	T	43921480	1	4	15	0	1	0	0	0	0	0	0	0	17152	928	32	4		4	URGCP	7	43921480	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	339921	43921480	115217183	1065	32715											
GCK	2645	broad.mit.edu	37	chr7	44187204	44187204	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccatctgccgctgcaccAgagcggcccagggcctgggt	13	17	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44187204	G	G	44187204	1	3	15	0	1	0	0	0	0	0	0	0	6355	203	7	5		5	GCK	7	44187204	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	265724	44187204	114951459	1066	32716											
OGDH	4967	broad.mit.edu	37	chr7	44713896	44713896	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagctgatctgcccacctcGgcctcccaaggtgctgggat	11	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44713896	C	C	44713896	1	2	15	0	1	0	0	0	0	0	0	0	10934	1131	39	4		4	OGDH	7	44713896	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	526692	44713896	114424767	1067	32717											
PURB	5814	broad.mit.edu	37	chr7	44924058	44924058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttcgccgccgccgctgCccccaccacgtcgctcataa	7	21	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44924058	A	A	44924058	3	1	15	1	0	0	0	0	1	0	0	0	12936	739	26	3	52	3	PURB	7	44924058	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	210162	44924058	114214605	1068	32718											
ADCY1	107	broad.mit.edu	37	chr7	45753510	45753510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccccccgtgtgccccatGcctggcgtctcagtcagggc	12	18	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45753510	T	T	45753510	3	4	15	1	0	0	0	0	1	0	0	0	292	1319	46	3	3354	3	ADCY1	7	45753510	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	829452	45753510	113385153	1069	32719											
PKD1L1	168507	broad.mit.edu	37	chr7	47944149	47944149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaattttcttctgcaccCtgatgacatggggctcagag	9	12	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47944149	A	A	47944149	3	1	15	1	0	0	0	0	1	0	0	0	12059	681	24	2	6976	2	PKD1L1	7	47944149	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2190639	47944149	111194514	1070	32720											
SUN3	256979	broad.mit.edu	37	chr7	48046855	48046855	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatctcttagcaatgccttCaggacatctatttgttcgat	6	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48046855	A	A	48046855	2	1	15	1	0	0	0	0	0	0	0	1	15511	813	29	3		3	SUN3	7	48046855	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	102706	48046855	111091808	1071	32721											
ABCA13	154664	broad.mit.edu	37	chr7	48315597	48315597	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaaatcctggattcaccgTcattgaagacattagaaatt	8	7	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48315597	A	A	48315597	3	1	15	1	0	0	0	0	1	0	0	0	31	1667	58	5	6229	5	ABCA13	7	48315597	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	268742	48315597	110823066	1072	32722											
IKZF1	10320	broad.mit.edu	37	chr7	50444527	50444527	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttttcctttagtggcctgGagaaggtgcatggggtttga	15	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50444527	T	T	50444527	1	4	15	0	1	0	0	0	0	0	0	0	7684	1189	41	3		3	IKZF1	7	50444527	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2128930	50444527	108694136	1073	32723											
IKZF1	10320	broad.mit.edu	37	chr7	50455013	50455013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggctggcatttaattgGggtcttgaactcaattgtgt	12	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50455013	T	T	50455013	1	4	15	0	1	0	0	0	0	0	0	0	7684	1247	43	2		2	IKZF1	7	50455013	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	10486	50455013	108683650	1074	32724											
FIGNL1	63979	broad.mit.edu	37	chr7	50514655	50514655	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtacactactcatttTgaaaacattatttattgaca	3	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50514655	A	A	50514655	4	1	15	1	0	0	0	0	0	1	0	0	5949	1821	63	5	1697	5	FIGNL1	7	50514655	Nonsense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	59642	50514655	108624008	1075	32725											
COBL	23242	broad.mit.edu	37	chr7	51258799	51258799	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagaacacacaggcaaaaaGaattcagtaagatatcctcc	7	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51258799	T	T	51258799	1	4	15	0	1	0	0	0	0	0	0	0	3685	957	33	3		3	COBL	7	51258799	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	744144	51258799	107879864	1076	32726											
POM121L12	285877	broad.mit.edu	37	chr7	53104242	53104242	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcacccagtctgctggccCctttggctcctaagaatctg	10	14	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104242	A	A	53104242	3	1	15	1	0	0	0	0	1	0	0	0	12336	623	22	2	880	2	POM121L12	7	53104242	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1845443	53104242	106034421	1077	32727											
EGFR	1956	broad.mit.edu	37	chr7	55220429	55220429	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccacccacaccaggacagaAgacttcctgtgggggagctg	12	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55220429	T	T	55220429	1	4	15	0	1	0	0	0	0	0	0	0	5007	87	3	5		5	EGFR	7	55220429	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2116187	55220429	103918234	1078	32728											
EGFR	1956	broad.mit.edu	37	chr7	55224350	55224350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgccggtggcatttagGgggtgagtcacaggttcagt	15	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55224350	T	T	55224350	3	4	15	1	0	0	0	0	1	0	0	0	5007	1223	43	2	1165	2	EGFR	7	55224350	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3921	55224350	103914313	1079	32729											
SEPT14	346288	broad.mit.edu	37	chr7	55912145	55912145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtattacttacacaaattaGtctatggcaaaggaagtcaa	8	6	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55912145	T	T	55912145	1	4	15	0	1	0	0	0	0	0	0	0	14176	1044	36	3		3	SEPT14	7	55912145	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	687795	55912145	103226518	1080	32730											
SUMF2	25870	broad.mit.edu	37	chr7	56146138	56146138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggacatgcgcgtcctccGgggggcatcctggatcgaca	15	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56146138	T	T	56146138	1	4	15	0	1	0	0	0	0	0	0	0	15504	1116	39	1		1	SUMF2	7	56146138	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	233993	56146138	102992525	1081	32731											
GUSB	2990	broad.mit.edu	37	chr7	65429376	65429376	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacgtattttctgcgtttttGatccagacccagatggtact	8	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65429376	A	A	65429376	4	1	15	1	0	0	0	0	0	1	0	0	6967	1299	45	4	240	4	GUSB	7	65429376	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	9283238	65429376	93709287	1082	32732											
AUTS2	26053	broad.mit.edu	37	chr7	70231466	70231466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaagggaatgtgtcctaGtgccctgcctcaggcagctc	13	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70231466	T	T	70231466	1	4	15	0	1	0	0	0	0	0	0	0	1230	1044	36	3		3	AUTS2	7	70231466	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4802090	70231466	88907197	1083	32733											
FKBP6	8468	broad.mit.edu	37	chr7	72743399	72743399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaacacatggacagacCcttcgattctaattacttta	6	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72743399	A	A	72743399	3	1	15	1	0	0	0	0	1	0	0	0	5969	623	22	2	268	2	FKBP6	7	72743399	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2511933	72743399	86395264	1084	32734											
BAZ1B	9031	broad.mit.edu	37	chr7	72903483	72903483	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagccatcagagaaataatGatgctttatcctgctgtcca	9	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72903483	A	A	72903483	1	1	15	0	1	0	0	0	0	0	0	0	1335	1305	45	4		4	BAZ1B	7	72903483	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	160084	72903483	86235180	1085	32735											
CCL26	10344	broad.mit.edu	37	chr7	75401182	75401182	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatgactgatggggccccaGaaagtacgtccgagaaatac	12	10	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75401182	C	C	75401182	1	2	15	0	1	0	0	0	0	0	0	0	2926	957	33	4		4	CCL26	7	75401182	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2497699	75401182	83737481	1086	32736											
PION	54103	broad.mit.edu	37	chr7	77026748	77026748	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagctattaaaacaaaaaTattttttaatttgaagtttc	4	3	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77026748	C	C	77026748	1	2	15	0	1	0	0	0	0	0	0	0	12029	1421	49	5		5	PION	7	77026748	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1625566	77026748	82111915	1087	32737											
HGF	3082	broad.mit.edu	37	chr7	81350104	81350104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccacattgaacatgttaGtccagatcttgtttgggata	9	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81350104	T	T	81350104	3	4	15	1	0	0	0	0	1	0	0	0	7152	1020	36	3	994	3	HGF	7	81350104	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4323356	81350104	77788559	1088	32738											
CACNA2D1	781	broad.mit.edu	37	chr7	81593676	81593676	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctccaaaaaatcttccaatCtggtgaagaaaaaaatcata	4	8	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81593676	A	A	81593676	5	1	15	1	0	0	0	0	0	0	1	0	2574	927	32	3	729	3	CACNA2D1	7	81593676	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	243572	81593676	77544987	1089	32739											
CACNA2D1	781	broad.mit.edu	37	chr7	81594867	81594868	+	Intron	INS	-	A	A													gtaatgttgatccgggaaacINSacactttggaaagcctaatt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81594868	A	A	81594867	6	5	15	0	1	1	1	0	0	0	0	0	2574	493	17	0		0	CACNA2D1	7	81594867	Intron	INS	-	TCGA-05-4410-01A-21D-1855-08	1191	81594867	77543796	1090	32740											
PCLO	27445	broad.mit.edu	37	chr7	82580348	82580348	+	Frame_Shift_Del	DEL	T	-	-													aggaaacacttcggatgctgTggttaaagtgggaacagagt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82580348	-	-	82580348	7	5	15	1	0	1	0	1	0	0	0	0	11677	1696	59	0	5969	0	PCLO	7	82580348	Frame_Shift_Del	DEL	T	TCGA-05-4410-01A-21D-1855-08	985481	82580348	76558315	1091	32741											
PCLO	27445	broad.mit.edu	37	chr7	82585749	82585749	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caactgaatcataaggctctCttctagtagttatgtcatca	6	9	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82585749	T	T	82585749	3	4	15	1	0	0	0	0	1	0	0	0	11677	913	32	4	11009	4	PCLO	7	82585749	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5401	82585749	76552914	1092	32742											
SEMA3D	223117	broad.mit.edu	37	chr7	84636061	84636061	+	Intron	SNP	C	A	A													cagaattaaaagttgaacatCtctcaatcgtacactatttc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84636061	A	A	84636061	1	1	15	0	1	0	0	0	0	0	0	0	14140	928	32	3		3	SEMA3D	7	84636061	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2050312	84636061	74502602	1093	32743	190	2									
SEMA3D	223117	broad.mit.edu	37	chr7	84636063	84636063	+	Intron	SNP	C	A	A													gaattaaaagttgaacatctCtcaatcgtacactatttccc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84636063	A	A	84636063	1	1	15	0	1	0	0	0	0	0	0	0	14140	928	32	3		3	SEMA3D	7	84636063	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2	84636063	74502600	1094	32744	190	2									
SEMA3D	223117	broad.mit.edu	37	chr7	84642165	84642165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggcgtctagctctcctGcggaaaggggattaaactta	11	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84642165	T	T	84642165	1	4	15	0	1	0	0	0	0	0	0	0	14140	1334	46	3		3	SEMA3D	7	84642165	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6102	84642165	74496498	1095	32745											
SEMA3D	223117	broad.mit.edu	37	chr7	84658587	84658587	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgtctactctcactgaTgacaagggccatttgagcaa	8	10	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84658587	A	A	84658587	1	1	15	0	1	0	0	0	0	0	0	0	14140	1479	51	5		5	SEMA3D	7	84658587	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	16422	84658587	74480076	1096	32746											
SEMA3D	223117	broad.mit.edu	37	chr7	84697561	84697561	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggacatttcagtctgcCagactccaaattatgtgtgt	9	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84697561	T	T	84697561	3	4	15	1	0	0	0	0	1	0	0	0	14140	594	21	4	1850	4	SEMA3D	7	84697561	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	38974	84697561	74441102	1097	32747											
SLC25A40	55972	broad.mit.edu	37	chr7	87483519	87483519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaatataatcaccttacCaatgttccctggaaatttcc	5	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87483519	A	A	87483519	3	1	15	1	0	0	0	0	1	0	0	0	14619	608	21	2	784	2	SLC25A40	7	87483519	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2785958	87483519	71655144	1098	32748											
MGC26647	219557	broad.mit.edu	37	chr7	88423497	88423497	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acattatccctctcaatcctAgaaacgtgaaggagcaggcc	8	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88423497	T	T	88423497	4	4	15	1	0	0	0	0	0	0	0	0	9643	433	15	5	5	5	MGC26647	7	88423497	Nonstop_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	939978	88423497	70715166	1099	32749											
ZNF804B	219578	broad.mit.edu	37	chr7	88965846	88965846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcgagttttgcctgctGcagggcctactgccttctct	9	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88965846	T	T	88965846	3	4	15	1	0	0	0	0	1	0	0	0	18300	1319	46	3	3564	3	ZNF804B	7	88965846	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	542349	88965846	70172817	1100	32750											
ZNF804B	219578	broad.mit.edu	37	chr7	88966076	88966076	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accattatccctgcacacccCactttcttagcaggtcatcc	4	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88966076	T	T	88966076	2	4	15	1	0	0	0	0	0	0	0	1	18300	581	21	4		4	ZNF804B	7	88966076	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	230	88966076	70172587	1101	32751											
CDK14	5218	broad.mit.edu	37	chr7	90377056	90377056	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggaaaaactaggggaaGgatcttatgctacagtatac	11	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90377056	T	T	90377056	4	4	15	1	0	0	0	0	0	1	0	0	3160	1001	35	2	386	2	CDK14	7	90377056	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1410980	90377056	68761607	1102	32752											
FZD1	8321	broad.mit.edu	37	chr7	90895699	90895699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcgtgtacctgtttatcGgcacgtcctttctgctggcc	9	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90895699	T	T	90895699	3	4	15	1	0	0	0	0	1	0	0	0	6188	1116	39	1	1506	1	FZD1	7	90895699	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	518643	90895699	68242964	1103	32753											
AKAP9	10142	broad.mit.edu	37	chr7	91672051	91672051	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaattagacagaaaacctGaagatgtgcctcctgagatt	10	7	0	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91672051	A	A	91672051	3	1	15	1	0	0	0	0	1	0	0	0	459	1291	45	4	5206	4	AKAP9	7	91672051	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	776352	91672051	67466612	1104	32754											
C7orf64	84060	broad.mit.edu	37	chr7	92164096	92164096	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagttgacagatttatgcctAggacaacacaactgcaggag	10	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92164096	G	G	92164096	3	3	15	1	0	0	0	0	1	0	0	0	2435	411	15	5	843	5	C7orf64	7	92164096	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	492045	92164096	66974567	1105	32755											
SAMD9	54809	broad.mit.edu	37	chr7	92731987	92731987	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatcaactgaaatgttccCgtttcctccgttttcctcta	4	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92731987	T	T	92731987	3	4	15	1	0	0	0	0	1	0	0	0	13937	652	23	4	1349	4	SAMD9	7	92731987	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	567891	92731987	66406676	1106	32756											
SAMD9	54809	broad.mit.edu	37	chr7	92733814	92733814	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttccctcttggcattaTgtcttcatgtgtaagaaatg	7	8	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92733814	A	A	92733814	3	1	15	1	0	0	0	0	1	0	0	0	13937	1464	51	5	3176	5	SAMD9	7	92733814	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1827	92733814	66404849	1107	32757											
SAMD9	54809	broad.mit.edu	37	chr7	92734749	92734749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatacaagctgaagcaaatCggaaaacctcattgctaaat	6	9	2	1	rs148603551		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92734749	A	A	92734749	3	1	15	1	0	0	0	0	1	0	0	0	13937	884	31	3	4111	3	SAMD9	7	92734749	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	935	92734749	66403914	1108	32758											
HEPACAM2	253012	broad.mit.edu	37	chr7	92837962	92837962	+	Frame_Shift_Del	DEL	A	-	-													tatgttgttgtaagcacagcAcacatagtccattgtcttct							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92837962	-	-	92837962	7	5	15	1	0	1	0	1	0	0	0	0	7120	159	6	0	473	0	HEPACAM2	7	92837962	Frame_Shift_Del	DEL	A	TCGA-05-4410-01A-21D-1855-08	103213	92837962	66300701	1109	32759											
CALCR	799	broad.mit.edu	37	chr7	93108585	93108585	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggcatattaaattaaaatTattcaacacatatttaacca	2	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93108585	A	A	93108585	1	1	15	0	1	0	0	0	0	0	0	0	2605	1769	61	5		5	CALCR	7	93108585	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	270623	93108585	66030078	1110	32760											
GNGT1	2792	broad.mit.edu	37	chr7	93536190	93536190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttagtattttattttaagCtagagatactgtgggagtac	9	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93536190	A	A	93536190	1	1	15	0	1	0	0	0	0	0	0	0	6597	812	28	3		3	GNGT1	7	93536190	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	427605	93536190	65602473	1111	32761											
PPP1R9A	55607	broad.mit.edu	37	chr7	94750039	94750039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagatgaggatggtcttgGtataagtattattggaatgg	13	1	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94750039	T	T	94750039	3	4	15	1	0	0	0	0	1	0	0	0	12479	1261	44	3	1554	3	PPP1R9A	7	94750039	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1213849	94750039	64388624	1112	32762											
ASB4	51666	broad.mit.edu	37	chr7	95125234	95125234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacgtggcttgtgaaatgGccaatgtggattgtgttaag	13	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95125234	T	T	95125234	3	4	15	1	0	0	0	0	1	0	0	0	1029	1203	42	3	358	3	ASB4	7	95125234	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	375195	95125234	64013429	1113	32763											
ACN9	57001	broad.mit.edu	37	chr7	96747046	96747046	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcgctatgccggggcGgcacgtttctcgagtccggg	19	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96747046	A	A	96747046	3	1	15	1	0	0	0	0	1	0	0	0	145	1116	39	4	13	4	ACN9	7	96747046	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1621812	96747046	62391617	1114	32764											
TMEM130	222865	broad.mit.edu	37	chr7	98452969	98452969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaggcagagagaaccccGttagacctggtggctaagga	14	8	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98452969	T	T	98452969	1	4	15	0	1	0	0	0	0	0	0	0	16166	1160	40	3		3	TMEM130	7	98452969	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1705923	98452969	60685694	1115	32765											
PTCD1	26024	broad.mit.edu	37	chr7	99022694	99022694	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccagtagcgtgagggtcctGatgtcgggctgctgcctgtg	17	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99022694	C	C	99022694	3	2	15	1	0	0	0	0	1	0	0	0	12833	1280	45	4	653	4	PTCD1	7	99022694	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	569725	99022694	60115969	1116	32766											
PTCD1	26024	broad.mit.edu	37	chr7	99050156	99050156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggtctgccttagacccCgctggacaacttgggagagg	15	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99050156	T	T	99050156	1	4	15	0	1	0	0	0	0	0	0	0	12833	667	23	4		4	PTCD1	7	99050156	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	27462	99050156	60088507	1117	32767											
CYP3A43	64816	broad.mit.edu	37	chr7	99447310	99447310	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttggatccctttttactCttaatatgtatgtggacttt	6	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99447310	T	T	99447310	2	4	15	1	0	0	0	0	0	0	0	1	4212	900	32	4		4	CYP3A43	7	99447310	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	397154	99447310	59691353	1118	32768											
CYP3A43	64816	broad.mit.edu	37	chr7	99463537	99463537	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taacttttgcagatcccactGaaattagacaatctaccaat	4	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99463537	T	T	99463537	2	4	15	1	0	0	0	0	0	0	0	1	4212	1285	45	3		3	CYP3A43	7	99463537	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	16227	99463537	59675126	1119	32769											
C7orf51	222950	broad.mit.edu	37	chr7	100085977	100085977	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgatgtgggtgcccaGgaagagcctgtgtacattga	14	9	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100085977	A	A	100085977	2	1	15	1	0	0	0	0	0	0	0	1	2425	991	35	4		4	C7orf51	7	100085977	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	622440	100085977	59052686	1120	32770											
LRCH4	4034	broad.mit.edu	37	chr7	100179906	100179906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagactgagaagcacacGctcccacgtggccctggctc	11	15	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100179906	T	T	100179906	1	4	15	0	1	0	0	0	0	0	0	0	9022	1102	38	3		3	LRCH4	7	100179906	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	93929	100179906	58958757	1121	32771											
TFR2	7036	broad.mit.edu	37	chr7	100226011	100226011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttctgtcctggtccccCagggtctctgtttctctgtc	8	15	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100226011	A	A	100226011	1	1	15	0	1	0	0	0	0	0	0	0	15934	609	21	2		2	TFR2	7	100226011	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	46105	100226011	58912652	1122	32772											
ZAN	7455	broad.mit.edu	37	chr7	100395326	100395326	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggttttcttgctttctcctCagatactgttctggactgtg	9	9	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100395326	A	A	100395326	1	1	15	0	1	0	0	0	0	0	0	0	17640	841	29	3		3	ZAN	7	100395326	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	169315	100395326	58743337	1123	32773											
MUC17	140453	broad.mit.edu	37	chr7	100676223	100676223	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacctcaactcctagtgaagGaagcactccattaacaagta	6	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100676223	A	A	100676223	3	1	15	1	0	0	0	0	1	0	0	0	10068	1174	41	4	1536	4	MUC17	7	100676223	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	280897	100676223	58462440	1124	32774											
MUC17	140453	broad.mit.edu	37	chr7	100679089	100679089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtatacctgtcagcaaCacgccggtggccaattctga	9	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100679089	A	A	100679089	3	1	15	1	0	0	0	0	1	0	0	0	10068	477	17	3	4402	3	MUC17	7	100679089	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2866	100679089	58459574	1125	32775											
MUC17	140453	broad.mit.edu	37	chr7	100679784	100679784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcctttaacaagtataaCtgtcagaacaacaccggtgg	7	10	1	1	rs146239691		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100679784	A	A	100679784	3	1	15	1	0	0	0	0	1	0	0	0	10068	565	20	3	5097	3	MUC17	7	100679784	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	695	100679784	58458879	1126	32776											
MUC17	140453	broad.mit.edu	37	chr7	100680500	100680500	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacaagtatacctgtcagcAccacaacagtggccagttct	7	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100680500	T	T	100680500	3	4	15	1	0	0	0	0	1	0	0	0	10068	159	6	5	5813	5	MUC17	7	100680500	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	716	100680500	58458163	1127	32777											
MUC17	140453	broad.mit.edu	37	chr7	100683216	100683216	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttgacaccagcacacCtgtgaccacttctactaaag	6	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100683216	T	T	100683216	3	4	15	1	0	0	0	0	1	0	0	0	10068	681	24	4	8529	4	MUC17	7	100683216	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2716	100683216	58455447	1128	32778											
MUC17	140453	broad.mit.edu	37	chr7	100683456	100683456	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggtaccagcatgccaaTctcaactcctagtgaagtaa	8	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100683456	A	A	100683456	3	1	15	1	0	0	0	0	1	0	0	0	10068	1435	50	5	8769	5	MUC17	7	100683456	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	240	100683456	58455207	1129	32779											
RELN	5649	broad.mit.edu	37	chr7	103183359	103183359	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatatggtttacctatgaCcccaactatagtgagttgta	7	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103183359	T	T	103183359	1	4	15	0	1	0	0	0	0	0	0	0	13328	522	18	4		4	RELN	7	103183359	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2499903	103183359	55955304	1130	32780											
RELN	5649	broad.mit.edu	37	chr7	103205894	103205894	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatactggagctgtacacTgtgggagttgctgaagggct	15	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103205894	A	A	103205894	3	1	15	1	0	0	0	0	1	0	0	0	13328	1580	55	5	5469	5	RELN	7	103205894	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	22535	103205894	55932769	1131	32781											
ORC5L	5001	broad.mit.edu	37	chr7	103808843	103808843	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatttcctgactgaatgctCtttagtattaactttagtat	5	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103808843	T	T	103808843	1	4	15	0	1	0	0	0	0	0	0	0	11359	922	32	4		4	ORC5L	7	103808843	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	602949	103808843	55329820	1132	32782											
LHFPL3	375612	broad.mit.edu	37	chr7	104309860	104309860	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacagagaccactggaaggAgtcagataggaaagatggca	14	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104309860	T	T	104309860	1	4	15	0	1	0	0	0	0	0	0	0	8838	319	11	5		5	LHFPL3	7	104309860	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	501017	104309860	54828803	1133	32783											
SRPK2	6733	broad.mit.edu	37	chr7	104767553	104767553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcacttcagagactggcCcccaagtcaacagctttttc	7	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104767553	A	A	104767553	1	1	15	0	1	0	0	0	0	0	0	0	15278	638	22	2		2	SRPK2	7	104767553	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	457693	104767553	54371110	1134	32784											
COG5	10466	broad.mit.edu	37	chr7	107053032	107053032	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caataaaaagtagatcatttTctatcacttctattccagaa	3	8	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107053032	C	C	107053032	3	2	15	1	0	0	0	0	1	0	0	0	3693	1783	62	5	1973	5	COG5	7	107053032	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	2285479	107053032	52085631	1135	32785											
SLC26A4	5172	broad.mit.edu	37	chr7	107340520	107340520	+	Intron	DEL	A	-	-													aatcccagacaatttcttttAatgccagattgaagaacctc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107340520	-	-	107340520	6	5	15	0	1	1	0	1	0	0	0	0	14633	377	13	0		0	SLC26A4	7	107340520	Intron	DEL	A	TCGA-05-4410-01A-21D-1855-08	287488	107340520	51798143	1136	32786											
SLC26A3	1811	broad.mit.edu	37	chr7	107432339	107432339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggaaaaaggatgcataCaacccatagactgggggaat	13	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107432339	A	A	107432339	3	1	15	1	0	0	0	0	1	0	0	0	14632	477	17	3	2048	3	SLC26A3	7	107432339	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	91819	107432339	51706324	1137	32787											
LAMB1	3912	broad.mit.edu	37	chr7	107605093	107605093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcactgacgtccaatcatGtgaggccggcatgagcactg	12	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107605093	T	T	107605093	3	4	15	1	0	0	0	0	1	0	0	0	8682	1368	48	3	3842	3	LAMB1	7	107605093	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	172754	107605093	51533570	1138	32788											
LAMB1	3912	broad.mit.edu	37	chr7	107642212	107642212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaacagagttggggggaCacaagcagggagtggagccc	18	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107642212	A	A	107642212	1	1	15	0	1	0	0	0	0	0	0	0	8682	493	17	3		3	LAMB1	7	107642212	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	37119	107642212	51496451	1139	32789											
NRCAM	4897	broad.mit.edu	37	chr7	107801019	107801019	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctcagagtaaaaaattgCcacgttatgtgagctttcat	7	8	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107801019	G	G	107801019	1	3	15	0	1	0	0	0	0	0	0	0	10739	754	26	4		4	NRCAM	7	107801019	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	158807	107801019	51337644	1140	32790											
PPP1R3A	5506	broad.mit.edu	37	chr7	113519998	113519998	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaaaatctccctttacGgagctttctgctgatgaact	7	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113519998	C	C	113519998	2	2	15	1	0	0	0	0	0	0	0	1	12472	1103	39	4		4	PPP1R3A	7	113519998	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	5718979	113519998	45618665	1141	32791											
FOXP2	93986	broad.mit.edu	37	chr7	114066505	114066506	+	Intron	DNP	GG	CT	CT													gagagggacatcttgataatGgaagtgtgaaggtgtaacgt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	114066506	CT	CT	114066505	1	2	15	0	1	0	0	0	0	0	0	0	6087	1363	47	4		4	FOXP2	7	114066505	Intron	DNP	GG	TCGA-05-4410-01A-21D-1855-08	546507	114066505	45072158	1142	32792											
FOXP2	93986	broad.mit.edu	37	chr7	114284717	114284717	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagctttttgagatgaatctGacgtcgtgttcttttgctac	9	7	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114284717	C	C	114284717	1	2	15	0	1	0	0	0	0	0	0	0	6087	1305	45	4		4	FOXP2	7	114284717	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	218212	114284717	44853946	1143	32793											
FOXP2	93986	broad.mit.edu	37	chr7	114299759	114299759	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagcagttttaagatgcCtaccacagttccttacagat	6	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114299759	T	T	114299759	1	4	15	0	1	0	0	0	0	0	0	0	6087	696	24	4		4	FOXP2	7	114299759	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	15042	114299759	44838904	1144	32794											
CAPZA2	830	broad.mit.edu	37	chr7	116552119	116552119	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtaatttctttttctaAtaggttcattattatgaaga	5	4	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116552119	G	G	116552119	1	3	15	0	1	0	0	0	0	0	0	0	2667	116	4	5		5	CAPZA2	7	116552119	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2252360	116552119	42586544	1145	32795											
KCND2	3751	broad.mit.edu	37	chr7	119915076	119915076	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcccggaaatcatcggCgactgctgttatgaggagta	11	10	2	1	rs138118192	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119915076	T	T	119915076	2	4	15	1	0	0	0	0	0	0	0	1	8089	755	27	4		4	KCND2	7	119915076	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3362957	119915076	39223587	1146	32796											
C7orf58	79974	broad.mit.edu	37	chr7	120782100	120782100	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgaatctccagcacacGgtgagactctgatcacgtac	10	11	3	3	rs149665410		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120782100	T	T	120782100	3	4	15	1	0	0	0	0	1	0	0	0	2430	1116	39	1	2018	1	C7orf58	7	120782100	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	867024	120782100	38356563	1147	32797											
C7orf58	79974	broad.mit.edu	37	chr7	120911417	120911417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctatgaagtagttgacaCattcactataacaatggggc	10	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120911417	A	A	120911417	3	1	15	1	0	0	0	0	1	0	0	0	2430	478	17	3	2929	3	C7orf58	7	120911417	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	129317	120911417	38227246	1148	32798											
PTPRZ1	5803	broad.mit.edu	37	chr7	121608163	121608163	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcattggaaaacacattcAttcataacactgggaaaaca	5	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121608163	C	C	121608163	3	2	15	1	0	0	0	0	1	0	0	0	12922	217	8	5	293	5	PTPRZ1	7	121608163	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	696746	121608163	37530500	1149	32799											
ASB15	142685	broad.mit.edu	37	chr7	123254505	123254505	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttactctatgtactgtttTgggccatttcttgataataa	7	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123254505	G	G	123254505	1	3	15	0	1	0	0	0	0	0	0	0	1023	1827	63	5		5	ASB15	7	123254505	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1646342	123254505	35884158	1150	32800											
SPAM1	6677	broad.mit.edu	37	chr7	123594379	123594379	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgatgatctcagctggtTgtggaatgaaagcactgctc	11	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123594379	G	G	123594379	3	3	15	1	0	0	0	0	1	0	0	0	15102	1821	63	5	757	5	SPAM1	7	123594379	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	339874	123594379	35544284	1151	32801											
GRM8	2918	broad.mit.edu	37	chr7	126173818	126173818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagttgtaaccttcacagcGttcacagtgccagcagcaag	10	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126173818	T	T	126173818	3	4	15	1	0	0	0	0	1	0	0	0	6869	1145	40	3	1170	3	GRM8	7	126173818	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2579439	126173818	32964845	1152	32802											
ZNF800	168850	broad.mit.edu	37	chr7	127013541	127013541	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatttattgcatctgtgaaGagaaaagttttttgtgactt	8	4	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127013541	C	C	127013541	3	2	15	1	0	0	0	0	1	0	0	0	18298	942	33	4	153	4	ZNF800	7	127013541	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	839723	127013541	32125122	1153	32803											
FSCN3	29999	broad.mit.edu	37	chr7	127238614	127238614	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcctgggcattgcaccCaacagcctgctgatggccaa	10	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127238614	T	T	127238614	2	4	15	1	0	0	0	0	0	0	0	1	6129	581	21	4		4	FSCN3	7	127238614	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	225073	127238614	31900049	1154	32804											
PAX4	5078	broad.mit.edu	37	chr7	127253161	127253161	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagacctgagcgaggacaggGacaatgcagctggctgtact	14	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127253161	T	T	127253161	1	4	15	0	1	0	0	0	0	0	0	0	11575	1189	41	3		3	PAX4	7	127253161	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	14547	127253161	31885502	1155	32805											
PAX4	5078	broad.mit.edu	37	chr7	127253428	127253428	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcacctcccctctccaccTcattggaacccaaagccctg	4	20	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127253428	G	G	127253428	1	3	15	0	1	0	0	0	0	0	0	0	11575	1566	54	5		5	PAX4	7	127253428	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	267	127253428	31885235	1156	32806											
CCDC136	64753	broad.mit.edu	37	chr7	128446346	128446346	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaatatgatactagccAggatgagcagaacgagctct	10	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128446346	T	T	128446346	3	4	15	1	0	0	0	0	1	0	0	0	2796	188	7	5	1175	5	CCDC136	7	128446346	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1192918	128446346	30692317	1157	32807											
FLNC	2318	broad.mit.edu	37	chr7	128489169	128489169	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccctggcccctccctccctCacccccgcccaatgccccag	6	26	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128489169	A	A	128489169	1	1	15	0	1	0	0	0	0	0	0	0	5993	841	29	3		3	FLNC	7	128489169	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	42823	128489169	30649494	1158	32808											
FLNC	2318	broad.mit.edu	37	chr7	128493676	128493676	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgacaagcacgtgcctgGtaaggctctgggcagaggtc	15	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128493676	T	T	128493676	5	4	15	1	0	0	0	0	0	0	1	0	5993	1275	44	3	6512	3	FLNC	7	128493676	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	4507	128493676	30644987	1159	32809											
FLNC	2318	broad.mit.edu	37	chr7	128496863	128496863	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatcgatgtcaagttcaaCggtgcccacatccctggaag	9	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128496863	T	T	128496863	2	4	15	1	0	0	0	0	0	0	0	1	5993	535	19	4		4	FLNC	7	128496863	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3187	128496863	30641800	1160	32810											
FLNC	2318	broad.mit.edu	37	chr7	128497099	128497099	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtccccacagaggctgtccAgggagctggggcccagtccc	14	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128497099	T	T	128497099	1	4	15	0	1	0	0	0	0	0	0	0	5993	203	7	5		5	FLNC	7	128497099	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	236	128497099	30641564	1161	32811											
C7orf45	136263	broad.mit.edu	37	chr7	129847928	129847928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcttctctagggcttctGtctgggtaggatatcttttt	10	7	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129847928	T	T	129847928	3	4	15	1	0	0	0	0	1	0	0	0	2420	1377	48	3	180	3	C7orf45	7	129847928	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1350829	129847928	29290735	1162	32812											
CPA2	1358	broad.mit.edu	37	chr7	129906792	129906792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctagaaacatttgtggGgtaagttatgctttctggtg	12	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129906792	T	T	129906792	3	4	15	1	0	0	0	0	1	0	0	0	3822	1246	43	2	73	2	CPA2	7	129906792	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	58864	129906792	29231871	1163	32813											
CPA1	1357	broad.mit.edu	37	chr7	130025014	130025014	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agccagcagtaacccctgctCggagacttaccacggcaagt	10	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130025014	T	T	130025014	3	4	15	1	0	0	0	0	1	0	0	0	3821	893	31	4	845	4	CPA1	7	130025014	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	118222	130025014	29113649	1164	32814											
PLXNA4	91584	broad.mit.edu	37	chr7	131865426	131865426	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacggtgcacggcttctcCccaaccagcacagtgtagtt	10	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131865426	A	A	131865426	2	1	15	1	0	0	0	0	0	0	0	1	12217	610	22	2		2	PLXNA4	7	131865426	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1840412	131865426	27273237	1165	32815											
PLXNA4	91584	broad.mit.edu	37	chr7	131872379	131872379	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagtgtctgtgtagaaagGatgtggcctgagacacaacc	13	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131872379	T	T	131872379	1	4	15	0	1	0	0	0	0	0	0	0	12217	1189	41	3		3	PLXNA4	7	131872379	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6953	131872379	27266284	1166	32816											
EXOC4	60412	broad.mit.edu	37	chr7	133502044	133502044	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatataacattttcctcatAaatttaataaccttcttact	0	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133502044	C	C	133502044	1	2	15	0	1	0	0	0	0	0	0	0	5348	377	13	5		5	EXOC4	7	133502044	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1629665	133502044	25636619	1167	32817											
EXOC4	60412	broad.mit.edu	37	chr7	133692395	133692395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctctaatctgtcatccGttttctttgccccgcactgt	6	14	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133692395	T	T	133692395	1	4	15	0	1	0	0	0	0	0	0	0	5348	1160	40	3		3	EXOC4	7	133692395	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	190351	133692395	25446268	1168	32818											
LRGUK	136332	broad.mit.edu	37	chr7	133868684	133868684	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caatagttgtagtaaaatctCcgatattgctaatgttggct	8	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133868684	G	G	133868684	1	3	15	0	1	0	0	0	0	0	0	0	9030	870	30	4		4	LRGUK	7	133868684	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	176289	133868684	25269979	1169	32819											
AKR1B15	441282	broad.mit.edu	37	chr7	134260654	134260654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgttacggcctacagcCccctgggctctccggataga	10	16	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134260654	A	A	134260654	3	1	15	1	0	0	0	0	1	0	0	0	468	623	22	2	740	2	AKR1B15	7	134260654	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	391970	134260654	24878009	1170	32820											
CALD1	800	broad.mit.edu	37	chr7	134613570	134613570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaacggcgccgccgagcccGacaggaacggctgcggcaga	17	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134613570	T	T	134613570	3	4	15	1	0	0	0	0	1	0	0	0	2607	1058	37	3	200	3	CALD1	7	134613570	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	352916	134613570	24525093	1171	32821											
CNOT4	4850	broad.mit.edu	37	chr7	135106985	135106985	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtacactagccaaatgttTgcgattttctgatattttct	6	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135106985	A	A	135106985	4	1	15	1	0	0	0	0	0	1	0	0	3653	1821	63	5	1768	5	CNOT4	7	135106985	Nonsense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	493415	135106985	24031678	1172	32822											
SLC13A4	26266	broad.mit.edu	37	chr7	135392916	135392916	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagagcaatgcgcttatgcAggttccacttctccacggca	10	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135392916	T	T	135392916	3	4	15	1	0	0	0	0	1	0	0	0	14507	188	7	5	1625	5	SLC13A4	7	135392916	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	285931	135392916	23745747	1173	32823											
DGKI	9162	broad.mit.edu	37	chr7	137075975	137075975	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataccagggtcaaacagcAgtttccaggtcctcatggcc	10	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137075975	G	G	137075975	2	3	15	1	0	0	0	0	0	0	0	1	4511	175	7	5		5	DGKI	7	137075975	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1683059	137075975	22062688	1174	32824											
CREB3L2	64764	broad.mit.edu	37	chr7	137590467	137590467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttattcttgatcttcctcCgaattttcttcagggccttc	5	13	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137590467	A	A	137590467	3	1	15	1	0	0	0	0	1	0	0	0	3889	652	23	1	694	1	CREB3L2	7	137590467	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	514492	137590467	21548196	1175	32825											
TTC26	79989	broad.mit.edu	37	chr7	138832135	138832135	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctggatctagtaccactAtgtgttcaaatctgtttagt	7	9	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138832135	G	G	138832135	1	3	15	0	1	0	0	0	0	0	0	0	16820	464	16	5		5	TTC26	7	138832135	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1241668	138832135	20306528	1176	32826											
UBN2	254048	broad.mit.edu	37	chr7	138944042	138944042	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaaagaagatgatattgaGatgaagaagcggaagcggaa	13	2	0	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138944042	T	T	138944042	3	4	15	1	0	0	0	0	1	0	0	0	17019	933	33	3	849	3	UBN2	7	138944042	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	111907	138944042	20194621	1177	32827											
KLRG2	346689	broad.mit.edu	37	chr7	139164538	139164538	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaagcacagagactgcTggtgagctgcagggtaagct	14	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139164538	C	C	139164538	1	2	15	0	1	0	0	0	0	0	0	0	8493	1595	55	5		5	KLRG2	7	139164538	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	220496	139164538	19974125	1178	32828											
BRAF	673	broad.mit.edu	37	chr7	140481411	140481411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtagactgttccaaatgatCcagatccaattctttgtccc	6	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481411	A	A	140481411	3	1	15	1	0	0	0	0	1	0	0	0	1505	855	30	3	935	3	BRAF	7	140481411	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1316873	140481411	18657252	1179	32829											
TAS2R38	5726	broad.mit.edu	37	chr7	141672757	141672757	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagacaagagacttgagggCtttaatgtgggcctccaggc	15	8	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141672757	T	T	141672757	3	4	15	1	0	0	0	0	1	0	0	0	15694	797	28	4	272	4	TAS2R38	7	141672757	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1191346	141672757	17465906	1180	32830											
MGAM	8972	broad.mit.edu	37	chr7	141756802	141756802	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacattctgggtgccagagtCcacattgattagtataactc	8	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141756802	A	A	141756802	1	1	15	0	1	0	0	0	0	0	0	0	9634	870	30	3		3	MGAM	7	141756802	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	84045	141756802	17381861	1181	32831											
MGAM	8972	broad.mit.edu	37	chr7	141765202	141765202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacatttccctcttctggcCgctgggcaggacattggctg	11	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141765202	A	A	141765202	3	1	15	1	0	0	0	0	1	0	0	0	9634	652	23	1	4698	1	MGAM	7	141765202	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	8400	141765202	17373461	1182	32832											
PRSS1	5644	broad.mit.edu	37	chr7	142460405	142460405	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcttccttgagggaggcaAggattcatgtcaggtgattt	15	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142460405	T	T	142460405	3	4	15	1	0	0	0	0	1	0	0	0	12720	72	3	5	592	5	PRSS1	7	142460405	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	695203	142460405	16678258	1183	32833											
EPHB6	2051	broad.mit.edu	37	chr7	142568025	142568025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctccaggctgtcctcctgGattacatctacttatgttgg	9	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142568025	T	T	142568025	3	4	15	1	0	0	0	0	1	0	0	0	5220	1174	41	3	2720	3	EPHB6	7	142568025	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	107620	142568025	16570638	1184	32834											
TRPV6	55503	broad.mit.edu	37	chr7	142572888	142572888	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accagctccccgaccagccgGatatcgtccttaggggtcat	10	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142572888	A	A	142572888	2	1	15	1	0	0	0	0	0	0	0	1	16725	1164	41	4		4	TRPV6	7	142572888	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	4863	142572888	16565775	1185	32835											
TRPV5	56302	broad.mit.edu	37	chr7	142626598	142626598	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagacactggccctgcgggTgagcagggcacgcaccaggt	16	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142626598	G	G	142626598	3	3	15	1	0	0	0	0	1	0	0	0	16724	1696	59	5	1825	5	TRPV5	7	142626598	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	53710	142626598	16512065	1186	32836											
KEL	3792	broad.mit.edu	37	chr7	142649457	142649457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctgtccaacttgcctgCttctatggaaagccaagaca	8	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142649457	A	A	142649457	1	1	15	0	1	0	0	0	0	0	0	0	8212	812	28	3		3	KEL	7	142649457	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	22859	142649457	16489206	1187	32837											
KEL	3792	broad.mit.edu	37	chr7	142658594	142658594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctggagtgctctgtgGgaggaaccaagaggtgaaag	15	7	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142658594	T	T	142658594	1	4	15	0	1	0	0	0	0	0	0	0	8212	1247	43	2		2	KEL	7	142658594	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	9137	142658594	16480069	1188	32838											
PIP	5304	broad.mit.edu	37	chr7	142829214	142829214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgttttctccagcatgcGcttgctccagctcctgttca	7	14	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142829214	A	A	142829214	3	1	15	1	0	0	0	0	1	0	0	0	12030	1087	38	4	7	4	PIP	7	142829214	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	170620	142829214	16309449	1189	32839											
TAS2R39	259285	broad.mit.edu	37	chr7	142881157	142881157	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcttttttctttaacctgGggattgtgactcctctgatc	9	9	2	2	rs150355894		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142881157	A	A	142881157	3	1	15	1	0	0	0	0	1	0	0	0	15695	1232	43	4	648	4	TAS2R39	7	142881157	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	51943	142881157	16257506	1190	32840											
CASP2	835	broad.mit.edu	37	chr7	142985678	142985678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggaaggggagcgtgGcccccaggcgtgcggccctg	19	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142985678	T	T	142985678	1	4	15	0	1	0	0	0	0	0	0	0	2697	1218	42	3		3	CASP2	7	142985678	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	104521	142985678	16152985	1191	32841											
CASP2	835	broad.mit.edu	37	chr7	142988854	142988854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgacaaaatatggaaaGggtgtcgtatctttcttcct	9	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142988854	T	T	142988854	1	4	15	0	1	0	0	0	0	0	0	0	2697	1015	35	2		2	CASP2	7	142988854	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3176	142988854	16149809	1192	32842											
CLCN1	1180	broad.mit.edu	37	chr7	143027815	143027815	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcagtggggagtgtggggGagcactttcactgctggctg	18	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143027815	T	T	143027815	1	4	15	0	1	0	0	0	0	0	0	0	3493	1189	41	3		3	CLCN1	7	143027815	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	38961	143027815	16110848	1193	32843											
CLCN1	1180	broad.mit.edu	37	chr7	143043957	143043957	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgggagccatagctaccAtgggaagaaaagggaaagaa	13	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143043957	T	T	143043957	1	4	15	0	1	0	0	0	0	0	0	0	3493	232	8	5		5	CLCN1	7	143043957	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	16142	143043957	16094706	1194	32844											
FAM131B	9715	broad.mit.edu	37	chr7	143056553	143056553	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggcagaggaataagaaGgtacgggcgtgctttataca	15	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143056553	T	T	143056553	1	4	15	0	1	0	0	0	0	0	0	0	5486	1015	35	2		2	FAM131B	7	143056553	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	12596	143056553	16082110	1195	32845											
TPK1	27010	broad.mit.edu	37	chr7	144150896	144150896	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataggtgaaatatatgatgTatggctttaaaatgggtaag	12	1	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144150896	A	A	144150896	1	1	15	0	1	0	0	0	0	0	0	0	16528	1653	57	5		5	TPK1	7	144150896	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1094343	144150896	14987767	1196	32846											
CNTNAP2	26047	broad.mit.edu	37	chr7	147336213	147336213	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagaggacaaagtgtggaCcatagtgtctcatgacttgc	11	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147336213	T	T	147336213	3	4	15	1	0	0	0	0	1	0	0	0	3679	507	18	4	1963	4	CNTNAP2	7	147336213	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3185317	147336213	11802450	1197	32847											
CNTNAP2	26047	broad.mit.edu	37	chr7	147964248	147964248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcgttaggtataaatgCgtgctacaaatacatttggg	11	5	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147964248	A	A	147964248	1	1	15	0	1	0	0	0	0	0	0	0	3679	783	27	3		3	CNTNAP2	7	147964248	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	628035	147964248	11174415	1198	32848											
ZNF746	155061	broad.mit.edu	37	chr7	149172163	149172163	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgttgaatggccttggggccTggctggggtccaagatggcc	17	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149172163	A	A	149172163	3	1	15	1	0	0	0	0	1	0	0	0	18258	1580	55	5	691	5	ZNF746	7	149172163	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1207915	149172163	9966500	1199	32849											
ZNF467	168544	broad.mit.edu	37	chr7	149467542	149467542	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctacctgagcacaccccCagtgctctctcttccctaga	5	18	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149467542	A	A	149467542	2	1	15	1	0	0	0	0	0	0	0	1	18054	581	21	2		2	ZNF467	7	149467542	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	295379	149467542	9671121	1200	32850											
SSPO	23145	broad.mit.edu	37	chr7	149483249	149483249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccctgggctgagcctgcGtcgtgctggcctcttcctgc	14	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149483249	T	T	149483249	3	4	15	1	0	0	0	0	1	0	0	0	15307	1145	40	3	3403	3	SSPO	7	149483249	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	15707	149483249	9655414	1201	32851											
SSPO	23145	broad.mit.edu	37	chr7	149500790	149500790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcgtgtgtgagaaggGggagttgctgtgccaaccag	17	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149500790	T	T	149500790	3	4	15	1	0	0	0	0	1	0	0	0	15307	1232	43	2	8322	2	SSPO	7	149500790	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	17541	149500790	9637873	1202	32852											
SSPO	23145	broad.mit.edu	37	chr7	149509187	149509187	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggctgaagaggagccatgtCtcctgcaggggtgtgatctt	15	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149509187	G	G	149509187	3	3	15	1	0	0	0	0	1	0	0	0	15307	913	32	4	9997	4	SSPO	7	149509187	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	8397	149509187	9629476	1203	32853											
SSPO	23145	broad.mit.edu	37	chr7	149522334	149522334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggggcccaagagcgtcccCaacacagactcctatcatct	9	16	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149522334	A	A	149522334	1	1	15	0	1	0	0	0	0	0	0	0	15307	609	21	2		2	SSPO	7	149522334	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	13147	149522334	9616329	1204	32854											
GIMAP8	155038	broad.mit.edu	37	chr7	150164204	150164204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactcggaaggatgatttgGgggatgacttgctgcaagat	14	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150164204	T	T	150164204	3	4	15	1	0	0	0	0	1	0	0	0	6449	1232	43	2	420	2	GIMAP8	7	150164204	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	641870	150164204	8974459	1205	32855											
GIMAP6	474344	broad.mit.edu	37	chr7	150327050	150327050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttctgtgactgggggacGtcagcttcctctccaagcac	10	12	3	1	rs141160524	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150327050	T	T	150327050	1	4	15	0	1	0	0	0	0	0	0	0	6447	1160	40	3		3	GIMAP6	7	150327050	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	162846	150327050	8811613	1206	32856											
GIMAP1	170575	broad.mit.edu	37	chr7	150417046	150417046	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggcgttcaaatctctattCttaaccacttatgctaaagg	6	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150417046	G	G	150417046	1	3	15	0	1	0	0	0	0	0	0	0	6443	928	32	4		4	GIMAP1	7	150417046	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	89996	150417046	8721617	1207	32857											
TMEM176B	28959	broad.mit.edu	37	chr7	150490383	150490383	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagcaaagcctgccagggtGagcaggctggatatatagcc	14	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150490383	A	A	150490383	2	1	15	1	0	0	0	0	0	0	0	1	16216	1277	45	4		4	TMEM176B	7	150490383	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	73337	150490383	8648280	1208	32858											
TMEM176B	28959	broad.mit.edu	37	chr7	150491002	150491002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccataagcgccttcttgccCatcaccacttgcctccctcc	4	20	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150491002	A	A	150491002	1	1	15	0	1	0	0	0	0	0	0	0	16216	609	21	2		2	TMEM176B	7	150491002	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	619	150491002	8647661	1209	32859											
RHEB	6009	broad.mit.edu	37	chr7	151200535	151200535	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggagacaatgaattttttGaccttgatgactagacatga	10	5	0	7			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151200535	C	C	151200535	1	2	15	0	1	0	0	0	0	0	0	0	13437	1305	45	4		4	RHEB	7	151200535	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	709533	151200535	7938128	1210	32860											
MLL3	58508	broad.mit.edu	37	chr7	151945260	151945260	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagatttgcctccttggtaTgaaacatctttcacacaacc	5	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151945260	C	C	151945260	2	2	15	1	0	0	0	0	0	0	0	1	9715	1451	51	5		5	MLL3	7	151945260	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	744725	151945260	7193403	1211	32861											
HTR5A	3361	broad.mit.edu	37	chr7	154862664	154862664	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctccaccccctcccctttgGagaccaaccacagcctcggc	6	21	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154862664	C	C	154862664	3	2	15	1	0	0	0	0	1	0	0	0	7520	1175	41	4	57	4	HTR5A	7	154862664	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2917404	154862664	4275999	1212	32862											
HTR5A	3361	broad.mit.edu	37	chr7	154862942	154862942	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgccgctggcagctaggtcgGaggctgtgccagctttggat	16	11	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154862942	C	C	154862942	2	2	15	1	0	0	0	0	0	0	0	1	7520	1161	41	4		4	HTR5A	7	154862942	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	278	154862942	4275721	1213	32863											
HTR5A	3361	broad.mit.edu	37	chr7	154863469	154863469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttgtgtttgggagtggGgggagtaaactgggagagtg	19	2	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154863469	T	T	154863469	1	4	15	0	1	0	0	0	0	0	0	0	7520	1247	43	2		2	HTR5A	7	154863469	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	527	154863469	4275194	1214	32864											
HTR5A	3361	broad.mit.edu	37	chr7	154876005	154876005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcatcctcattggcgtgttCgtgctctgctggatcccctt	11	13	2	0	rs145653373		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154876005	A	A	154876005	3	1	15	1	0	0	0	0	1	0	0	0	7520	883	31	3	888	3	HTR5A	7	154876005	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	12536	154876005	4262658	1215	32865											
HTR5A	3361	broad.mit.edu	37	chr7	154876017	154876017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcgtgttcgtgctctgctgGatccccttctttctcaccga	10	14	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154876017	T	T	154876017	3	4	15	1	0	0	0	0	1	0	0	0	7520	1183	41	3	900	3	HTR5A	7	154876017	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	12	154876017	4262646	1216	32866											
RNF32	140545	broad.mit.edu	37	chr7	156437527	156437527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattaatagtataatttttTatgttacagaaataacttat	4	2	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156437527	C	C	156437527	1	2	15	0	1	0	0	0	0	0	0	0	13599	1769	61	5		5	RNF32	7	156437527	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1561510	156437527	2701136	1217	32867											
RP1L1	94137	broad.mit.edu	37	chr8	10467868	10467868	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggttttccagatcccctGggctctcataagttcttgaa	9	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10467868	A	A	10467868	3	1	15	1	0	0	0	0	1	0	0	0	13644	1348	47	4	3466	4	RP1L1	8	10467868	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08		10467868	135896154	1218	32868											
C8orf74	203076	broad.mit.edu	37	chr8	10555073	10555074	+	Intron	DNP	CC	AA	AA													cctggcagggcagctctgtcCcactcccactctgttcttgg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	10555074	AA	AA	10555073	1	1	15	0	1	0	0	0	0	0	0	0	2462	638	22	2		2	C8orf74	8	10555073	Intron	DNP	CC	TCGA-05-4410-01A-21D-1855-08	87205	10555073	135808949	1219	32869											
EFHA2	286097	broad.mit.edu	37	chr8	16948123	16948123	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactttaaatgttctttatGtatatagccctcacctgtta	4	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16948123	T	T	16948123	1	4	15	0	1	0	0	0	0	0	0	0	4984	1392	48	3		3	EFHA2	8	16948123	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6393050	16948123	129415899	1220	32870											
DOK2	9046	broad.mit.edu	37	chr8	21767420	21767421	+	Missense_Mutation	DNP	CC	AA	AA													ctccagagacgcagcgacggCctgcctcaaaggaaaaggtt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21767421	AA	AA	21767420	3	1	15	1	0	0	0	0	1	0	0	0	4737	739	26	3	601	3	DOK2	8	21767420	Missense_Mutation	DNP	CC	TCGA-05-4410-01A-21D-1855-08	4819297	21767420	124596602	1221	32871											
BMP1	649	broad.mit.edu	37	chr8	22058733	22058733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggcctgccaggcctccCggaccccttgttactcagga	12	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22058733	A	A	22058733	1	1	15	0	1	0	0	0	0	0	0	0	1462	667	23	1		1	BMP1	8	22058733	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	291313	22058733	124305289	1222	32872											
DOCK5	80005	broad.mit.edu	37	chr8	25168016	25168016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatcaacagcaatagcccGgaagatgggctttcctgaaa	10	9	1	3	rs146574972		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25168016	T	T	25168016	3	4	15	1	0	0	0	0	1	0	0	0	4730	1116	39	1	1336	1	DOCK5	8	25168016	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3109283	25168016	121196006	1223	32873											
PTK2B	2185	broad.mit.edu	37	chr8	27295394	27295394	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagagcatcaactgcgtgcAcaggtaggggtggagggagt	19	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27295394	C	C	27295394	3	2	15	1	0	0	0	0	1	0	0	0	12869	159	6	5	1706	5	PTK2B	8	27295394	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	2127378	27295394	119068628	1224	32874											
ELP3	55140	broad.mit.edu	37	chr8	27987005	27987005	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaacaggttaattattttaGatttgctctacaggtattct	7	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27987005	T	T	27987005	1	4	15	0	1	0	0	0	0	0	0	0	5123	957	33	3		3	ELP3	8	27987005	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	691611	27987005	118377017	1225	32875											
TEX15	56154	broad.mit.edu	37	chr8	30705979	30705979	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttgtataagcattaccGgactcctgttgggctctctg	9	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30705979	T	T	30705979	2	4	15	1	0	0	0	0	0	0	0	1	15901	1103	39	1		1	TEX15	8	30705979	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2718974	30705979	115658043	1226	32876											
WRN	7486	broad.mit.edu	37	chr8	30977913	30977913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcttgtcacgtcctctGggctcctgcagacattaact	8	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30977913	T	T	30977913	3	4	15	1	0	0	0	0	1	0	0	0	17529	1357	47	2	2681	2	WRN	8	30977913	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	271934	30977913	115386109	1227	32877											
UNC5D	137970	broad.mit.edu	37	chr8	35541184	35541184	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggactcaggaaattacacCtgcatggcagccaacatcgt	9	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35541184	A	A	35541184	2	1	15	1	0	0	0	0	0	0	0	1	17121	668	24	2		2	UNC5D	8	35541184	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	4563271	35541184	110822838	1228	32878											
UNC5D	137970	broad.mit.edu	37	chr8	35541233	35541233	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagcctgtcggccactGttgtggtctacggtaagacc	14	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35541233	A	A	35541233	3	1	15	1	0	0	0	0	1	0	0	0	17121	1377	48	4	757	4	UNC5D	8	35541233	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	49	35541233	110822789	1229	32879											
KCNU1	157855	broad.mit.edu	37	chr8	36671868	36671868	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatccttaggacggaccttCatcatgttcttcacactggg	8	12	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36671868	T	T	36671868	2	4	15	1	0	0	0	0	0	0	0	1	8163	825	29	4		4	KCNU1	8	36671868	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1130635	36671868	109692154	1230	32880											
KCNU1	157855	broad.mit.edu	37	chr8	36746652	36746652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatccacctgctttggcCttccaaagtgcttggattac	9	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36746652	A	A	36746652	1	1	15	0	1	0	0	0	0	0	0	0	8163	696	24	2		2	KCNU1	8	36746652	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	74784	36746652	109617370	1231	32881											
KCNU1	157855	broad.mit.edu	37	chr8	36766906	36766906	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagatgcccactcagccccGatggggcttcggaactttgt	13	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36766906	A	A	36766906	2	1	15	1	0	0	0	0	0	0	0	1	8163	1045	37	4		4	KCNU1	8	36766906	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	20254	36766906	109597116	1232	32882											
FGFR1	2260	broad.mit.edu	37	chr8	38285552	38285552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacttcactgtcttggcagCcggcactgcatgcaatttct	9	12	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38285552	A	A	38285552	3	1	15	1	0	0	0	0	1	0	0	0	5920	739	26	3	2256	3	FGFR1	8	38285552	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1518646	38285552	108078470	1233	32883											
ADAM2	2515	broad.mit.edu	37	chr8	39646227	39646227	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactggaaaactttttgagcGacaacagttgtatcagaccc	8	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39646227	T	T	39646227	2	4	15	1	0	0	0	0	0	0	0	1	241	1045	37	3		3	ADAM2	8	39646227	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1360675	39646227	106717795	1234	32884											
AGPAT6	137964	broad.mit.edu	37	chr8	41468294	41468294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggattagccttctggtggtGggcacaactgtggtgggata	17	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41468294	T	T	41468294	2	4	15	1	0	0	0	0	0	0	0	1	391	1335	47	2		2	AGPAT6	8	41468294	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1822067	41468294	104895728	1235	32885											
ANK1	286	broad.mit.edu	37	chr8	41542077	41542077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccattcatctgggaggGtgacagcgagtagtcgcggt	14	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41542077	T	T	41542077	3	4	15	1	0	0	0	0	1	0	0	0	620	1261	44	3	1473	3	ANK1	8	41542077	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	73783	41542077	104821945	1236	32886											
ANK1	286	broad.mit.edu	37	chr8	41552150	41552150	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttggtgacggcattctccGggaacgttgcctgtaccagg	13	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41552150	A	A	41552150	3	1	15	1	0	0	0	0	1	0	0	0	620	1116	39	4	2744	4	ANK1	8	41552150	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	10073	41552150	104811872	1237	32887											
POTEA	340441	broad.mit.edu	37	chr8	43211972	43211972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactagaactcaaaaatagCcactatgagcaacttacagt	5	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43211972	A	A	43211972	3	1	15	1	0	0	0	0	1	0	0	0	12356	738	26	3	1477	3	POTEA	8	43211972	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1659822	43211972	103152050	1238	32888											
KIAA0146	23514	broad.mit.edu	37	chr8	48424220	48424220	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccacataagcagactcttCctctggtgctgccccaaggc	9	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48424220	T	T	48424220	1	4	15	0	1	0	0	0	0	0	0	0	8227	870	30	4		4	KIAA0146	8	48424220	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5212248	48424220	97939802	1239	32889											
KIAA0146	23514	broad.mit.edu	37	chr8	48459808	48459808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtacttgggctcctcaGgtgtaacacgatgtacagca	10	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48459808	T	T	48459808	1	4	15	0	1	0	0	0	0	0	0	0	8227	1015	35	2		2	KIAA0146	8	48459808	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	35588	48459808	97904214	1240	32890											
PXDNL	137902	broad.mit.edu	37	chr8	52232456	52232456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacaaaacttttattagcGcttctctggggaatcacttg	8	9	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52232456	T	T	52232456	3	4	15	1	0	0	0	0	1	0	0	0	12956	1087	38	3	8	3	PXDNL	8	52232456	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3772648	52232456	94131566	1241	32891											
UBXN2B	137886	broad.mit.edu	37	chr8	59337528	59337528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatatcaatcacaacgtatGtccctgtccggccaattcca	6	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59337528	T	T	59337528	1	4	15	0	1	0	0	0	0	0	0	0	17041	1392	48	3		3	UBXN2B	8	59337528	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	7105072	59337528	87026494	1242	32892											
RAB2A	5862	broad.mit.edu	37	chr8	61484660	61484660	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaaacagataaaacttcaGatatgggatacggtaagtat	11	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61484660	T	T	61484660	3	4	15	1	0	0	0	0	1	0	0	0	13025	933	33	3	184	3	RAB2A	8	61484660	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2147132	61484660	84879362	1243	32893											
NKAIN3	286183	broad.mit.edu	37	chr8	63777550	63777550	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaaccacattctggggaaGactattccagagacgaagat	10	8	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63777550	T	T	63777550	1	4	15	0	1	0	0	0	0	0	0	0	10532	957	33	3		3	NKAIN3	8	63777550	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2292890	63777550	82586472	1244	32894											
COPS5	10987	broad.mit.edu	37	chr8	67958151	67958151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttctgactgctctaaCttttcagacaaatcaaagac	7	10	4	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67958151	A	A	67958151	3	1	15	1	0	0	0	0	1	0	0	0	3768	564	20	3	196	3	COPS5	8	67958151	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4180601	67958151	78405871	1245	32895											
SLCO5A1	81796	broad.mit.edu	37	chr8	70744859	70744859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttctgcagtggccggcGcctccagctgctctcccgcc	11	19	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70744859	T	T	70744859	3	4	15	1	0	0	0	0	1	0	0	0	14845	1087	38	3	2532	3	SLCO5A1	8	70744859	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2786708	70744859	75619163	1246	32896											
NCOA2	10499	broad.mit.edu	37	chr8	71186020	71186020	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actggagagaatgatgatgaTgaagttccagatcttgtgga	13	4	1	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71186020	A	A	71186020	1	1	15	0	1	0	0	0	0	0	0	0	10324	1479	51	5		5	NCOA2	8	71186020	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	441161	71186020	75178002	1247	32897											
KCNB2	9312	broad.mit.edu	37	chr8	73848595	73848595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcggagttacaatgaattGggcttgttgatattgtttct	12	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73848595	T	T	73848595	3	4	15	1	0	0	0	0	1	0	0	0	8083	1339	47	2	1011	2	KCNB2	8	73848595	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2662575	73848595	72515427	1248	32898											
CRISPLD1	83690	broad.mit.edu	37	chr8	75932315	75932315	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcttcacattgcccaagGtaaaccagtgtacacatagg	8	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75932315	T	T	75932315	5	4	15	1	0	0	0	0	0	0	1	0	3914	1275	44	3	1287	3	CRISPLD1	8	75932315	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	2083720	75932315	70431707	1249	32899											
ZFHX4	79776	broad.mit.edu	37	chr8	77690640	77690640	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggacaacctcagtgagaTcttttttgttaaagattgcc	10	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77690640	A	A	77690640	3	1	15	1	0	0	0	0	1	0	0	0	17761	1435	50	5	3300	5	ZFHX4	8	77690640	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1758325	77690640	68673382	1250	32900											
ZFHX4	79776	broad.mit.edu	37	chr8	77763548	77763548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagctatatgcctccttgcCcgtgaatggagaactgtggg	12	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763548	A	A	77763548	3	1	15	1	0	0	0	0	1	0	0	0	17761	623	22	2	4425	2	ZFHX4	8	77763548	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	72908	77763548	68600474	1251	32901											
ZFHX4	79776	broad.mit.edu	37	chr8	77767649	77767649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcaccacaggaagttccgGagatgtgaaaccggctttgt	12	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77767649	T	T	77767649	3	4	15	1	0	0	0	0	1	0	0	0	17761	1174	41	3	8526	3	ZFHX4	8	77767649	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4101	77767649	68596373	1252	32902											
FABP4	2167	broad.mit.edu	37	chr8	82392896	82392896	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcacgtacttatccaagtcaGagaatgtgtgtgtgcacaca	9	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82392896	C	C	82392896	1	2	15	0	1	0	0	0	0	0	0	0	5405	957	33	4		4	FABP4	8	82392896	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4625247	82392896	63971126	1253	32903											
CPNE3	8895	broad.mit.edu	37	chr8	87563527	87563527	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagtctttgttattttgttCtttgttctttgttttttttc	5	5	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87563527	T	T	87563527	1	4	15	0	1	0	0	0	0	0	0	0	3845	928	32	4		4	CPNE3	8	87563527	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5170631	87563527	58800495	1254	32904											
CNGB3	54714	broad.mit.edu	37	chr8	87670063	87670063	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgccacgtcttcagcaCtgacctctagctctggtaca	9	14	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87670063	G	G	87670063	1	3	15	0	1	0	0	0	0	0	0	0	3633	580	20	4		4	CNGB3	8	87670063	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	106536	87670063	58693959	1255	32905											
CNGB3	54714	broad.mit.edu	37	chr8	87752012	87752012	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgaatttacataaaaaTgaagttgaatgtaaaacata	7	2	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87752012	C	C	87752012	1	2	15	0	1	0	0	0	0	0	0	0	3633	1479	51	5		5	CNGB3	8	87752012	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	81949	87752012	58612010	1256	32906											
MMP16	4325	broad.mit.edu	37	chr8	89086857	89086857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagaacacaaaattcccgtCgctattttcataaactgcat	4	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89086857	A	A	89086857	3	1	15	1	0	0	0	0	1	0	0	0	9748	884	31	3	797	3	MMP16	8	89086857	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1334845	89086857	57277165	1257	32907											
DECR1	1666	broad.mit.edu	37	chr8	91063968	91063968	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcaacgacctgagaaagGtaatgcttttgtgtgtataa	9	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91063968	T	T	91063968	5	4	15	1	0	0	0	0	0	0	1	0	4415	1275	44	3	983	3	DECR1	8	91063968	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	1977111	91063968	55300054	1258	32908											
RUNX1T1	862	broad.mit.edu	37	chr8	93074710	93074710	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaaggtattttccatgCataatagaaagtaagctttc	9	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93074710	G	G	93074710	1	3	15	0	1	0	0	0	0	0	0	0	13858	725	25	4		4	RUNX1T1	8	93074710	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2010742	93074710	53289312	1259	32909											
C8orf37	157657	broad.mit.edu	37	chr8	96281413	96281413	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagctcgtccaggtcctccGccatcttgaatcgcctggcc	10	16	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96281413	A	A	96281413	3	1	15	1	0	0	0	0	1	0	0	0	2449	1087	38	4	642	4	C8orf37	8	96281413	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3206703	96281413	50082609	1260	32910											
PTDSS1	9791	broad.mit.edu	37	chr8	97311866	97311866	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaggaaatctatctatcTgcatggtaccccagttttgt	7	8	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97311866	C	C	97311866	1	2	15	0	1	0	0	0	0	0	0	0	12842	1595	55	5		5	PTDSS1	8	97311866	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1030453	97311866	49052156	1261	32911											
MATN2	4147	broad.mit.edu	37	chr8	99042728	99042728	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggggtaggaaaagccattGaggaggaactacaagagatt	14	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99042728	C	C	99042728	3	2	15	1	0	0	0	0	1	0	0	0	9426	1291	45	4	2449	4	MATN2	8	99042728	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1730862	99042728	47321294	1262	32912											
POP1	10940	broad.mit.edu	37	chr8	99169910	99169910	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaggatagtcggggagGccggcgagctcccggcagag	18	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99169910	A	A	99169910	3	1	15	1	0	0	0	0	1	0	0	0	12346	1203	42	4	2544	4	POP1	8	99169910	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	127182	99169910	47194112	1263	32913											
RGS22	26166	broad.mit.edu	37	chr8	100994230	100994230	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aataatcttctgggcttgctCtactggaatgtcaatttgta	8	7	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100994230	G	G	100994230	3	3	15	1	0	0	0	0	1	0	0	0	13414	922	32	4	523	4	RGS22	8	100994230	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1824320	100994230	45369792	1264	32914											
SPAG1	6674	broad.mit.edu	37	chr8	101195688	101195688	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttacatgtctttatatAaaatgtatcactaaaaaagt	4	4	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101195688	G	G	101195688	1	3	15	0	1	0	0	0	0	0	0	0	15091	377	13	5		5	SPAG1	8	101195688	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	201458	101195688	45168334	1265	32915											
SPAG1	6674	broad.mit.edu	37	chr8	101232595	101232595	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagtatgggaaagcttatGtggattataaaacagtgttg	12	3	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101232595	A	A	101232595	3	1	15	1	0	0	0	0	1	0	0	0	15091	1377	48	4	1670	4	SPAG1	8	101232595	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	36907	101232595	45131427	1266	32916											
NCALD	83988	broad.mit.edu	37	chr8	102705114	102705114	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattacagaggaaaccatcTtatagattgcctggggacag	10	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102705114	C	C	102705114	3	2	15	1	0	0	0	0	1	0	0	0	10296	1609	56	5	200	5	NCALD	8	102705114	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1472519	102705114	43658908	1267	32917											
RIMS2	9699	broad.mit.edu	37	chr8	104949022	104949022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatttatataactgtcagtAtaatttcatttgtagaatag	5	3	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104949022	G	G	104949022	1	3	15	0	1	0	0	0	0	0	0	0	13479	464	16	5		5	RIMS2	8	104949022	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2243908	104949022	41415000	1268	32918											
ZFPM2	23414	broad.mit.edu	37	chr8	106813153	106813153	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacagttaatatcacgaAtgaaattttgaaagatttca	6	4	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106813153	T	T	106813153	1	4	15	0	1	0	0	0	0	0	0	0	17784	116	4	5		5	ZFPM2	8	106813153	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1864131	106813153	39550869	1269	32919											
TMEM74	157753	broad.mit.edu	37	chr8	109665132	109665132	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactggattcacagtagacAgtgccctgtgtgaagagcga	12	9	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109665132	T	T	109665132	1	4	15	0	1	0	0	0	0	0	0	0	16325	203	7	5		5	TMEM74	8	109665132	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2851979	109665132	36698890	1270	32920											
PKHD1L1	93035	broad.mit.edu	37	chr8	110448582	110448582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggtggtactctactgaCtttatctggatttggcttta	10	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110448582	T	T	110448582	3	4	15	1	0	0	0	0	1	0	0	0	12067	565	20	4	3639	4	PKHD1L1	8	110448582	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	783450	110448582	35915440	1271	32921											
PKHD1L1	93035	broad.mit.edu	37	chr8	110464485	110464485	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctccagtttgtgtccacatCagaggtgtcggcatggccaa	12	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110464485	A	A	110464485	2	1	15	1	0	0	0	0	0	0	0	1	12067	816	29	3		3	PKHD1L1	8	110464485	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	15903	110464485	35899537	1272	32922											
PKHD1L1	93035	broad.mit.edu	37	chr8	110497320	110497320	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaagctacgatttccaccaGacagaaacaagaagtatcgt	7	10	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110497320	C	C	110497320	3	2	15	1	0	0	0	0	1	0	0	0	12067	933	33	4	9854	4	PKHD1L1	8	110497320	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	32835	110497320	35866702	1273	32923											
CSMD3	114788	broad.mit.edu	37	chr8	113249397	113249397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcatgaaggtatatttcGctgctgtttttattgcgata	9	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113249397	T	T	113249397	1	4	15	0	1	0	0	0	0	0	0	0	3980	1102	38	3		3	CSMD3	8	113249397	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2752077	113249397	33114625	1274	32924											
CSMD3	114788	broad.mit.edu	37	chr8	113301627	113301627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgatccactccaatggcCattcaattggcaggttcttg	9	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113301627	A	A	113301627	3	1	15	1	0	0	0	0	1	0	0	0	3980	594	21	2	2068	2	CSMD3	8	113301627	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	52230	113301627	33062395	1275	32925											
CSMD3	114788	broad.mit.edu	37	chr8	113348836	113348836	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttattccaaccttgttttaCtgtgtatataattgaataaa	4	5	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113348836	G	G	113348836	1	3	15	0	1	0	0	0	0	0	0	0	3980	580	20	4		4	CSMD3	8	113348836	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	47209	113348836	33015186	1276	32926											
CSMD3	114788	broad.mit.edu	37	chr8	113599538	113599538	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaagcaatatcatgtatggAagtgttatgcattttatttt	7	4	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113599538	T	T	113599538	1	4	15	0	1	0	0	0	0	0	0	0	3980	261	9	5		5	CSMD3	8	113599538	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	250702	113599538	32764484	1277	32927											
CSMD3	114788	broad.mit.edu	37	chr8	113668414	113668414	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttgaaaccattattggaAcgactgttgtctgttgtaaa	8	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113668414	T	T	113668414	2	4	15	1	0	0	0	0	0	0	0	1	3980	30	2	5		5	CSMD3	8	113668414	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	68876	113668414	32695608	1278	32928											
NOV	4856	broad.mit.edu	37	chr8	120430235	120430235	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttacatagcttcttcacTgtattgtgttcttgtttttc	5	8	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120430235	A	A	120430235	1	1	15	0	1	0	0	0	0	0	0	0	10648	1595	55	5		5	NOV	8	120430235	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	6761821	120430235	25933787	1279	32929											
FAM83A	84985	broad.mit.edu	37	chr8	124203984	124203984	+	Intron	DEL	A	-	-													ggactcaggcagtttgggtgAaaccagttagcacctgcccc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124203984	-	-	124203984	6	5	15	0	1	1	0	1	0	0	0	0	5686	261	9	0		0	FAM83A	8	124203984	Intron	DEL	A	TCGA-05-4410-01A-21D-1855-08	3773749	124203984	22160038	1280	32930											
KLHL38	340359	broad.mit.edu	37	chr8	124664765	124664765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcatacccaggcagttGctgggggccaactggctctg	13	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124664765	T	T	124664765	3	4	15	1	0	0	0	0	1	0	0	0	8461	1310	46	3	1355	3	KLHL38	8	124664765	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	460781	124664765	21699257	1281	32931											
SQLE	6713	broad.mit.edu	37	chr8	126015709	126015709	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaggagagttacgtggtatGaacaagcactcttcacttag	10	8	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126015709	A	A	126015709	1	1	15	0	1	0	0	0	0	0	0	0	15246	1305	45	4		4	SQLE	8	126015709	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1350944	126015709	20348313	1282	32932											
ASAP1	50807	broad.mit.edu	37	chr8	131414157	131414157	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagtgaatctctcgacgaAaaactggagagcctggaggc	12	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131414157	T	T	131414157	3	4	15	1	0	0	0	0	1	0	0	0	1014	11	1	5	3472	5	ASAP1	8	131414157	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	5398448	131414157	14949865	1283	32933											
ADCY8	114	broad.mit.edu	37	chr8	131915978	131915978	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attggagatgcacacgagcaTgcattcatggccaagcagaa	11	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131915978	A	A	131915978	1	1	15	0	1	0	0	0	0	0	0	0	300	1479	51	5		5	ADCY8	8	131915978	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	501821	131915978	14448044	1284	32934											
ADCY8	114	broad.mit.edu	37	chr8	132051588	132051588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataacccggggaagttagaGgggaaacaaatgcaaggcag	14	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132051588	T	T	132051588	1	4	15	0	1	0	0	0	0	0	0	0	300	1015	35	2		2	ADCY8	8	132051588	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	135610	132051588	14312434	1285	32935											
TMEM71	137835	broad.mit.edu	37	chr8	133771029	133771029	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcaaagcaaggaaattgcTaaaaggagtctaatcgttca	8	6	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133771029	A	A	133771029	1	1	15	0	1	0	0	0	0	0	0	0	16323	1537	53	5		5	TMEM71	8	133771029	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1719441	133771029	12592993	1286	32936											
TG	7038	broad.mit.edu	37	chr8	133885314	133885314	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaaaatgtttaggtccaagGagctgtgaaataagaaatcg	11	4	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133885314	C	C	133885314	3	2	15	1	0	0	0	0	1	0	0	0	15936	1165	41	4	504	4	TG	8	133885314	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	114285	133885314	12478708	1287	32937											
TG	7038	broad.mit.edu	37	chr8	134029979	134029979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggagagagcactcactgaGgcctctccccttcctcaccc	9	17	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134029979	A	A	134029979	1	1	15	0	1	0	0	0	0	0	0	0	15936	1015	35	4		4	TG	8	134029979	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	144665	134029979	12334043	1288	32938											
TG	7038	broad.mit.edu	37	chr8	134146934	134146934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagatggagccaagggcGggcagtcagcagagagtgaa	16	7	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134146934	T	T	134146934	3	4	15	1	0	0	0	0	1	0	0	0	15936	1116	39	1	8393	1	TG	8	134146934	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	116955	134146934	12217088	1289	32939											
ZFAT	57623	broad.mit.edu	37	chr8	135524846	135524846	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggagcttctgttgctgtcTaaataaaaacatagtaccta	7	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135524846	C	C	135524846	5	2	15	1	0	0	0	0	0	0	1	0	17758	1536	53	5	510	5	ZFAT	8	135524846	Splice_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	1377912	135524846	10839176	1290	32940											
FAM135B	51059	broad.mit.edu	37	chr8	139158255	139158255	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctccagggagccccagttCtatgaaagtctttaccagcc	8	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139158255	A	A	139158255	4	1	15	1	0	0	0	0	0	1	0	0	5495	922	32	3	757	3	FAM135B	8	139158255	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3633409	139158255	7205767	1291	32941											
FAM135B	51059	broad.mit.edu	37	chr8	139380382	139380382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgaacgtcaccactcagGgttccttttatggaaaaaga	8	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139380382	T	T	139380382	1	4	15	0	1	0	0	0	0	0	0	0	5495	1247	43	2		2	FAM135B	8	139380382	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	222127	139380382	6983640	1292	32942											
COL22A1	169044	broad.mit.edu	37	chr8	139642861	139642861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcacacaggacaagagCagaattggcaaacacctggg	14	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139642861	A	A	139642861	1	1	15	0	1	0	0	0	0	0	0	0	3713	725	25	3		3	COL22A1	8	139642861	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	262479	139642861	6721161	1293	32943											
COL22A1	169044	broad.mit.edu	37	chr8	139838847	139838847	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggtggtgccatccactgtGagaggggaacagaaagctca	15	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139838847	T	T	139838847	1	4	15	0	1	0	0	0	0	0	0	0	3713	1305	45	3		3	COL22A1	8	139838847	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	195986	139838847	6525175	1294	32944											
KCNK9	51305	broad.mit.edu	37	chr8	140631039	140631039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaacccaatggtagtcaacGtgatgaagcagtagtagtag	12	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140631039	T	T	140631039	3	4	15	1	0	0	0	0	1	0	0	0	8142	1145	40	3	541	3	KCNK9	8	140631039	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	792192	140631039	5732983	1295	32945											
CYP11B2	1585	broad.mit.edu	37	chr8	143994039	143994039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgtggtggaagttcctGccggagcccctgatgtctag	15	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143994039	T	T	143994039	2	4	15	1	0	0	0	0	0	0	0	1	4179	1306	46	3		3	CYP11B2	8	143994039	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	3363000	143994039	2369983	1296	32946											
ZFP41	286128	broad.mit.edu	37	chr8	144332450	144332450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaagcccttcaaatgcgGggagtgcgggaaagccttta	14	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144332450	T	T	144332450	3	4	15	1	0	0	0	0	1	0	0	0	17775	1232	43	2	439	2	ZFP41	8	144332450	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	338411	144332450	2031572	1297	32947											
ZNF707	286075	broad.mit.edu	37	chr8	144772325	144772325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgccgagcgcagcctccCttctgccctgctggctgcct	11	18	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144772325	A	A	144772325	1	1	15	0	1	0	0	0	0	0	0	0	18239	696	24	2		2	ZNF707	8	144772325	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	439875	144772325	1591697	1298	32948											
FAM83H	286077	broad.mit.edu	37	chr8	144810181	144810181	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaagtcatccgggtccgCgaaacccgcgcggcccccgc	14	17	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144810181	G	G	144810181	3	3	15	1	0	0	0	0	1	0	0	0	5693	768	27	4	2093	4	FAM83H	8	144810181	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	37856	144810181	1553841	1299	32949											
SMARCA2	6595	broad.mit.edu	37	chr9	2110342	2110342	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttcttgctgagcacaagAgctggtggcctgggcttaaa	12	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2110342	T	T	2110342	3	4	15	1	0	0	0	0	1	0	0	0	14883	301	11	5	3471	5	SMARCA2	9	2110342	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08		2110342	139103089	1300	32950											
KIAA1432	57589	broad.mit.edu	37	chr9	5754900	5754900	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgattttatggtccttgcGtgttataacataaatgaccg	8	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5754900	A	A	5754900	2	1	15	1	0	0	0	0	0	0	0	1	8303	1132	40	4		4	KIAA1432	9	5754900	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	3644558	5754900	135458531	1301	32951											
GLDC	2731	broad.mit.edu	37	chr9	6606739	6606739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcttctaagaacgcaaaGcaaacatagtaccgagggta	8	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6606739	T	T	6606739	1	4	15	0	1	0	0	0	0	0	0	0	6497	986	34	3		3	GLDC	9	6606739	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	851839	6606739	134606692	1302	32952											
KDM4C	23081	broad.mit.edu	37	chr9	6748971	6748971	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactttctggccctggccaCtgtatgccatggtggaattt	11	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6748971	A	A	6748971	1	1	15	0	1	0	0	0	0	0	0	0	8200	580	20	3		3	KDM4C	9	6748971	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	142232	6748971	134464460	1303	32953											
PTPRD	5789	broad.mit.edu	37	chr9	8341569	8341569	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacattttataatcatacaCctgagggaaaggtcaaatga	7	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8341569	A	A	8341569	1	1	15	0	1	0	0	0	0	0	0	0	12907	522	18	3		3	PTPRD	9	8341569	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1592598	8341569	132871862	1304	32954											
PTPRD	5789	broad.mit.edu	37	chr9	8518099	8518099	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgtaccaaaatggtggtcGaactcaacattcgtgcctgg	10	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8518099	T	T	8518099	4	4	15	1	0	0	0	0	0	1	0	0	12907	1059	37	3	4618	3	PTPRD	9	8518099	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	176530	8518099	132695332	1305	32955											
TYRP1	7306	broad.mit.edu	37	chr9	12704606	12704606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctattcctgaatggaacaGggggacaaacccatttgtct	9	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12704606	T	T	12704606	3	4	15	1	0	0	0	0	1	0	0	0	16942	1000	35	2	1180	2	TYRP1	9	12704606	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4186507	12704606	128508825	1306	32956											
MPDZ	8777	broad.mit.edu	37	chr9	13150681	13150681	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttggttctctccagagTtccaccctaaaaaataaata	5	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13150681	A	A	13150681	3	1	15	1	0	0	0	0	1	0	0	0	9816	1722	60	5	2754	5	MPDZ	9	13150681	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	446075	13150681	128062750	1307	32957											
CER1	9350	broad.mit.edu	37	chr9	14720334	14720334	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacccgcatttcccaaaGcaaaggttgttctgaacaac	7	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14720334	T	T	14720334	4	4	15	1	0	0	0	0	0	1	0	0	3295	963	34	3	249	3	CER1	9	14720334	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1569653	14720334	126493097	1308	32958											
SH3GL2	6456	broad.mit.edu	37	chr9	17793602	17793602	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcataggaaatatgcaGtaatacatttcttatggagt	10	5	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17793602	A	A	17793602	1	1	15	0	1	0	0	0	0	0	0	0	14364	1044	36	4		4	SH3GL2	9	17793602	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3073268	17793602	123419829	1309	32959											
HAUS6	54801	broad.mit.edu	37	chr9	19078172	19078172	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggcaagtcaacattacttActggagtccaacctttaatt	8	9	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19078172	C	C	19078172	5	2	15	1	0	0	0	0	0	0	1	0	7036	405	14	5	1706	5	HAUS6	9	19078172	Splice_Site	SNP	A	TCGA-05-4410-01A-21D-1855-08	1284570	19078172	122135259	1310	32960											
DENND4C	55667	broad.mit.edu	37	chr9	19352178	19352178	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctatcagaattgtgcaatgGaggtaaaagttctatattca	8	5	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19352178	T	T	19352178	4	4	15	1	0	0	0	0	0	1	0	0	4475	1175	41	3	3826	3	DENND4C	9	19352178	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	274006	19352178	121861253	1311	32961											
MLLT3	4300	broad.mit.edu	37	chr9	20363643	20363643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggcaatcaaacatataCtcaaacacacttagccatat	3	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20363643	A	A	20363643	1	1	15	0	1	0	0	0	0	0	0	0	9721	580	20	3		3	MLLT3	9	20363643	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1011465	20363643	120849788	1312	32962											
KIAA1797	54914	broad.mit.edu	37	chr9	20881987	20881987	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaaggaaagactgtagcagGaatccccaattttatattga	8	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20881987	C	C	20881987	3	2	15	1	0	0	0	0	1	0	0	0	8328	1174	41	4	2509	4	KIAA1797	9	20881987	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	518344	20881987	120331444	1313	32963											
KIAA1797	54914	broad.mit.edu	37	chr9	20907241	20907241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttatcatgccattttacaGgtaatgaaaccacaggatag	8	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20907241	T	T	20907241	3	4	15	1	0	0	0	0	1	0	0	0	8328	1014	35	2	2800	2	KIAA1797	9	20907241	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	25254	20907241	120306190	1314	32964											
KIAA1797	54914	broad.mit.edu	37	chr9	20953055	20953055	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggcttcttcattacaggaGgaaaaaaaggcaagtgagca	11	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20953055	C	C	20953055	3	2	15	1	0	0	0	0	1	0	0	0	8328	1001	35	4	4257	4	KIAA1797	9	20953055	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	45814	20953055	120260376	1315	32965											
KIAA1797	54914	broad.mit.edu	37	chr9	20986465	20986465	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagccatgccaatacggGtgaggacaccctggggtgaa	15	9	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20986465	T	T	20986465	5	4	15	1	0	0	0	0	0	0	1	0	8328	1275	44	3	5061	3	KIAA1797	9	20986465	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	33410	20986465	120226966	1316	32966											
IFNW1	3467	broad.mit.edu	37	chr9	21141502	21141502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctgaggcagatcacagCccagagatccaacagggcta	12	11	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21141502	A	A	21141502	3	1	15	1	0	0	0	0	1	0	0	0	7622	739	26	3	523	3	IFNW1	9	21141502	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	155037	21141502	120071929	1317	32967											
IFNA4	3441	broad.mit.edu	37	chr9	21186874	21186874	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcaactcgtggtggttatAgaagtgagtctttgaaatgg	12	4	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21186874	T	T	21186874	1	4	15	0	1	0	0	0	0	0	0	0	7609	435	15	5		5	IFNA4	9	21186874	3'UTR	SNP	A	TCGA-05-4410-01A-21D-1855-08	45372	21186874	120026557	1318	32968											
IFNA10	3446	broad.mit.edu	37	chr9	21206650	21206650	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctattagataaagagtgatTctttggaagtatttcctcac	7	6	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21206650	A	A	21206650	3	1	15	1	0	0	0	0	1	0	0	0	7602	1780	62	5	126	5	IFNA10	9	21206650	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	19776	21206650	120006781	1319	32969											
IFNA8	3445	broad.mit.edu	37	chr9	21409265	21409265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatctgcctcagactcaCagcctgggtaacaggagggc	13	11	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21409265	A	A	21409265	3	1	15	1	0	0	0	0	1	0	0	0	7613	477	17	3	92	3	IFNA8	9	21409265	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	202615	21409265	119804166	1320	32970											
TEK	7010	broad.mit.edu	37	chr9	27180369	27180369	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagtgtgagagagaaggtAaagcaaggtaacactgtagt	13	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27180369	G	G	27180369	1	3	15	0	1	0	0	0	0	0	0	0	15873	377	13	5		5	TEK	9	27180369	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	5771104	27180369	114033062	1321	32971											
TAF1L	138474	broad.mit.edu	37	chr9	32634689	32634689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattctactgagcattccaCctcctggatctgctcttcct	6	14	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32634689	A	A	32634689	3	1	15	1	0	0	0	0	1	0	0	0	15642	507	18	3	4595	3	TAF1L	9	32634689	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5454320	32634689	108578742	1322	32972											
B4GALT1	2683	broad.mit.edu	37	chr9	33113437	33113437	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctaatttcaggtctcttatCcgtgtaccaaaacgctagct	7	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33113437	A	A	33113437	1	1	15	0	1	0	0	0	0	0	0	0	1275	870	30	3		3	B4GALT1	9	33113437	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	478748	33113437	108099994	1323	32973											
UBAP1	51271	broad.mit.edu	37	chr9	34249796	34249796	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcacccctcctaatttctCagtgtcacaagtgcccaaca	6	15	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34249796	G	G	34249796	4	3	15	1	0	0	0	0	0	1	0	0	16962	838	29	4	1354	4	UBAP1	9	34249796	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1136359	34249796	106963635	1324	32974											
C9orf24	84688	broad.mit.edu	37	chr9	34382653	34382653	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcatttgttgggaaagcaAtgaggacctaatggtgaaat	14	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34382653	T	T	34382653	1	4	15	0	1	0	0	0	0	0	0	0	2501	116	4	5		5	C9orf24	9	34382653	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	132857	34382653	106830778	1325	32975											
C9orf25	203259	broad.mit.edu	37	chr9	34401172	34401172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggcagggaggcaccaccCacagctctgcggccactcca	12	17	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34401172	A	A	34401172	1	1	15	0	1	0	0	0	0	0	0	0	2502	609	21	2		2	C9orf25	9	34401172	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	18519	34401172	106812259	1326	32976											
ENHO	375704	broad.mit.edu	37	chr9	34521483	34521483	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagggctgcagcaggtagcTgccttcatggctgggcttct	14	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34521483	C	C	34521483	3	2	15	1	0	0	0	0	1	0	0	0	5161	1580	55	5	23	5	ENHO	9	34521483	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	120311	34521483	106691948	1327	32977											
KIAA1045	23349	broad.mit.edu	37	chr9	34971833	34971833	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaataaaatgtttgttatatCctggattcatcttagtgaaa	7	4	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34971833	A	A	34971833	1	1	15	0	1	0	0	0	0	0	0	0	8277	870	30	3		3	KIAA1045	9	34971833	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	450350	34971833	106241598	1328	32978											
RECK	8434	broad.mit.edu	37	chr9	36117030	36117030	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgacttttgataaatttggAtgtagccagtatgagtgtgt	11	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36117030	T	T	36117030	2	4	15	1	0	0	0	0	0	0	0	1	13308	320	12	5		5	RECK	9	36117030	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1145197	36117030	105096401	1329	32979											
PAX5	5079	broad.mit.edu	37	chr9	36882089	36882089	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacccggggagggtcgtgctCgccaagtcacggcctgagga	16	12	1	1	rs145283614		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36882089	A	A	36882089	2	1	15	1	0	0	0	0	0	0	0	1	11576	871	31	3		3	PAX5	9	36882089	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	765059	36882089	104331342	1330	32980											
POLR1E	64425	broad.mit.edu	37	chr9	37489454	37489454	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagtttgggtttgctggatGagttggcttgagttttagat	14	2	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37489454	A	A	37489454	1	1	15	0	1	0	0	0	0	0	0	0	12308	1305	45	4		4	POLR1E	9	37489454	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	607365	37489454	103723977	1331	32981											
CNTNAP3	79937	broad.mit.edu	37	chr9	39178249	39178249	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtagaattccattgctcTgcatggctttaaatttcaaa	7	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39178249	G	G	39178249	3	3	15	1	0	0	0	0	1	0	0	0	3680	1580	55	5	3299	5	CNTNAP3	9	39178249	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1688795	39178249	102035182	1332	32982											
FAM75A3	727830	broad.mit.edu	37	chr9	40702662	40702662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgcagcctcctggggCcacaccttgacaaaggtgac	10	15	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702662	A	A	40702662	3	1	15	1	0	0	0	0	1	0	0	0	5672	739	26	3	333	3	FAM75A3	9	40702662	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1524413	40702662	100510769	1333	32983											
FAM75A3	727830	broad.mit.edu	37	chr9	40702747	40702747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagagcacctgatggagcctCccagtcctctcatgagccta	9	14	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702747	A	A	40702747	3	1	15	1	0	0	0	0	1	0	0	0	5672	855	30	3	418	3	FAM75A3	9	40702747	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	85	40702747	100510684	1334	32984											
FAM75A3	727830	broad.mit.edu	37	chr9	40704246	40704246	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgaatcaccagggacaagtCaggccaagggcaaacccagt	11	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40704246	A	A	40704246	3	1	15	1	0	0	0	0	1	0	0	0	5672	827	29	3	1917	3	FAM75A3	9	40704246	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1499	40704246	100509185	1335	32985											
FAM75A3	727830	broad.mit.edu	37	chr9	40705716	40705716	+	Missense_Mutation	SNP	C	A	A													tagaaaaacatgaagaaaggCttgaaggattgaggactcct							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40705716	A	A	40705716	3	1	15	1	0	0	0	0	1	0	0	0	5672	797	28	3	3387	3	FAM75A3	9	40705716	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1470	40705716	100507715	1336	32986	191	2									
FAM75A3	727830	broad.mit.edu	37	chr9	40705718	40705718	+	Silent	SNP	T	G	G													gaaaaacatgaagaaaggctTgaaggattgaggactcctca							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40705718	G	G	40705718	2	3	15	1	0	0	0	0	0	0	0	1	5672	1799	63	5		5	FAM75A3	9	40705718	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	2	40705718	100507713	1337	32987	191	2									
ZNF658	26149	broad.mit.edu	37	chr9	40774548	40774548	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaaattcatcatccttacAggacttttctcctgttagaa	4	10	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40774548	G	G	40774548	3	3	15	1	0	0	0	0	1	0	0	0	18196	188	7	5	2456	5	ZNF658	9	40774548	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	68830	40774548	100438883	1338	32988											
APBA1	320	broad.mit.edu	37	chr9	72047596	72047596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatgaggctgcagatctgCcagagtcaaaggcagagtta	13	9	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72047596	A	A	72047596	1	1	15	0	1	0	0	0	0	0	0	0	758	754	26	3		3	APBA1	9	72047596	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	31273048	72047596	69165835	1339	32989											
GDA	9615	broad.mit.edu	37	chr9	74840612	74840612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccatataagtgaaaatcGtgatgaagttgaagctgtga	12	4	0	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74840612	T	T	74840612	3	4	15	1	0	0	0	0	1	0	0	0	6369	1145	40	3	764	3	GDA	9	74840612	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2793016	74840612	66372819	1340	32990											
TRPM6	140803	broad.mit.edu	37	chr9	77411735	77411735	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaagtcctgggactggggAacatgtgacatctcagcttt	13	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77411735	T	T	77411735	2	4	15	1	0	0	0	0	0	0	0	1	16715	233	9	5		5	TRPM6	9	77411735	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	2571123	77411735	63801696	1341	32991											
TRPM6	140803	broad.mit.edu	37	chr9	77442833	77442833	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgttgtgagcttgctgagGgggttatccagagtctggta	16	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77442833	T	T	77442833	2	4	15	1	0	0	0	0	0	0	0	1	16715	1219	43	2		2	TRPM6	9	77442833	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	31098	77442833	63770598	1342	32992											
GCNT1	2650	broad.mit.edu	37	chr9	79117415	79117415	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggattcatcaaaagcctgaaTttgtaagtgtcagacacttg	9	7	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79117415	A	A	79117415	3	1	15	1	0	0	0	0	1	0	0	0	6362	1493	52	5	120	5	GCNT1	9	79117415	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1674582	79117415	62096016	1343	32993											
PRUNE2	158471	broad.mit.edu	37	chr9	79321692	79321692	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagtctcccttcctggggtGaggccttccaccactcagtg	10	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79321692	A	A	79321692	3	1	15	1	0	0	0	0	1	0	0	0	12747	1294	45	4	3816	4	PRUNE2	9	79321692	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	204277	79321692	61891739	1344	32994											
PRUNE2	158471	broad.mit.edu	37	chr9	79325636	79325636	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttggggaagaagtcatcTgctggggagtagtctgcaga	16	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79325636	G	G	79325636	2	3	15	1	0	0	0	0	0	0	0	1	12747	1567	55	5		5	PRUNE2	9	79325636	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	3944	79325636	61887795	1345	32995											
VPS13A	23230	broad.mit.edu	37	chr9	79820890	79820890	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctttttaatcttcctAtaggaataaaatatgatcct	3	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79820890	G	G	79820890	1	3	15	0	1	0	0	0	0	0	0	0	17316	464	16	5		5	VPS13A	9	79820890	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	495254	79820890	61392541	1346	32996											
TLE1	7088	broad.mit.edu	37	chr9	84202721	84202721	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtcaatacagctggctcCgtctgtgtggccctggaatt	11	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84202721	A	A	84202721	4	1	15	1	0	0	0	0	0	1	0	0	16061	661	23	1	476	1	TLE1	9	84202721	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4381831	84202721	57010710	1347	32997											
FLJ46321	389763	broad.mit.edu	37	chr9	84609611	84609611	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaaattaggaaagacaCtagggagttcctagaagaga	11	5	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84609611	G	G	84609611	3	3	15	1	0	0	0	0	1	0	0	0	5990	565	20	4	4240	4	FLJ46321	9	84609611	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	406890	84609611	56603820	1348	32998											
FAM75C1	441452	broad.mit.edu	37	chr9	90536114	90536114	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcaggacgtctttagtgTctccactcctaaccttcccc	5	16	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90536114	C	C	90536114	3	2	15	1	0	0	0	0	1	0	0	0	5676	1667	58	5	1306	5	FAM75C1	9	90536114	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	5926503	90536114	50677317	1349	32999											
SEMA4D	10507	broad.mit.edu	37	chr9	91994133	91994133	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggaagggtgatggccccgGaggaggtggcctgcacggct	20	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91994133	C	C	91994133	3	2	15	1	0	0	0	0	1	0	0	0	14147	1174	41	4	1087	4	SEMA4D	9	91994133	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1458019	91994133	49219298	1350	33000											
ROR2	4920	broad.mit.edu	37	chr9	94486634	94486634	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaggcgggacagtcatcGgggcaaggcagcacctgccg	15	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94486634	T	T	94486634	2	4	15	1	0	0	0	0	0	0	0	1	13638	1103	39	1		1	ROR2	9	94486634	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2492501	94486634	46726797	1351	33001											
ROR2	4920	broad.mit.edu	37	chr9	94493208	94493208	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atactacacgagggtacgtcAcacagttccatgcgtacgtt	9	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94493208	C	C	94493208	3	2	15	1	0	0	0	0	1	0	0	0	13638	157	6	5	1676	5	ROR2	9	94493208	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	6574	94493208	46720223	1352	33002											
CENPP	401541	broad.mit.edu	37	chr9	95375392	95375392	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatcgaagctgctctggaAagcctgataaaatcgctttg	11	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95375392	G	G	95375392	2	3	15	1	0	0	0	0	0	0	0	1	3270	11	1	5		5	CENPP	9	95375392	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	882184	95375392	45838039	1353	33003											
WNK2	65268	broad.mit.edu	37	chr9	96082607	96082607	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttggcgagtggccagcaCtgcggtgggcccacagtcag	15	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96082607	T	T	96082607	1	4	15	0	1	0	0	0	0	0	0	0	17505	580	20	4		4	WNK2	9	96082607	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	707215	96082607	45130824	1354	33004											
FBP2	8789	broad.mit.edu	37	chr9	97325681	97325681	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagattcctccatagaccagGgtgcggtgcacgtcagccac	11	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97325681	T	T	97325681	2	4	15	1	0	0	0	0	0	0	0	1	5763	1219	43	2		2	FBP2	9	97325681	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1243074	97325681	43887750	1355	33005											
PTCH1	5727	broad.mit.edu	37	chr9	98244224	98244224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagaaagcatgatcacaCacttacaggaggtatgctgt	9	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98244224	A	A	98244224	1	1	15	0	1	0	0	0	0	0	0	0	12836	493	17	3		3	PTCH1	9	98244224	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	918543	98244224	42969207	1356	33006											
HSD17B3	3293	broad.mit.edu	37	chr9	99006653	99006653	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatattcctcttgcagggcCttggaaaatgcgcacacaaa	8	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99006653	T	T	99006653	2	4	15	1	0	0	0	0	0	0	0	1	7452	680	24	4		4	HSD17B3	9	99006653	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	762429	99006653	42206778	1357	33007											
NR4A3	8013	broad.mit.edu	37	chr9	102607124	102607124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgtttgtcctcagactttCcatcaggtaattactactat	6	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102607124	A	A	102607124	3	1	15	1	0	0	0	0	1	0	0	0	10729	855	30	3	1577	3	NR4A3	9	102607124	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3600471	102607124	38606307	1358	33008											
TEX10	54881	broad.mit.edu	37	chr9	103084051	103084051	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttccacccagaaaatgatGatctataaaaaacaaaggga	6	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103084051	A	A	103084051	3	1	15	1	0	0	0	0	1	0	0	0	15894	1294	45	4	831	4	TEX10	9	103084051	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	476927	103084051	38129380	1359	33009											
RNF20	56254	broad.mit.edu	37	chr9	104319843	104319843	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcttaaagaagagaaggagGagctggcagaccaggtgttg	16	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104319843	C	C	104319843	3	2	15	1	0	0	0	0	1	0	0	0	13584	1175	41	4	2405	4	RNF20	9	104319843	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1235792	104319843	36893588	1360	33010											
SMC2	10592	broad.mit.edu	37	chr9	106891871	106891871	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttaagaaactggcttatAcatattggtttgtaaacatt	7	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106891871	G	G	106891871	1	3	15	0	1	0	0	0	0	0	0	0	14897	406	14	5		5	SMC2	9	106891871	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2572028	106891871	34321560	1361	33011											
OR13C8	138802	broad.mit.edu	37	chr9	107331853	107331853	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccactgagataccctgtcatCatgagcaagggtgcctatgt	10	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107331853	T	T	107331853	2	4	15	1	0	0	0	0	0	0	0	1	11032	816	29	4		4	OR13C8	9	107331853	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	439982	107331853	33881578	1362	33012											
OR13C5	138799	broad.mit.edu	37	chr9	107361006	107361006	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttgcttctcccctccgaaGagctaattttgaagatgctc	8	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107361006	T	T	107361006	3	4	15	1	0	0	0	0	1	0	0	0	11031	942	33	3	269	3	OR13C5	9	107361006	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	29153	107361006	33852425	1363	33013											
SLC44A1	23446	broad.mit.edu	37	chr9	108145381	108145381	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcagtaggatattaaatatGatctttgttctctctgcttc	6	7	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108145381	C	C	108145381	1	2	15	0	1	0	0	0	0	0	0	0	14749	1305	45	4		4	SLC44A1	9	108145381	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	784375	108145381	33068050	1364	33014											
FKTN	2218	broad.mit.edu	37	chr9	108363572	108363572	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttcacaatgcaagtttttCtgtgttccaagagactttac	6	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108363572	G	G	108363572	3	3	15	1	0	0	0	0	1	0	0	0	5976	912	32	4	322	4	FKTN	9	108363572	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	218191	108363572	32849859	1365	33015											
ZNF462	58499	broad.mit.edu	37	chr9	109686588	109686589	+	In_Frame_Ins	INS	-	AGCTCA	AGCTCA													cacactagaaaggtccatggINSagctcaagctgaagggagtt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGCTCA	109686589	AGCTCA	AGCTCA	109686588	7	5	15	1	0	1	1	0	0	0	0	0	18053	1174	41	0	401	0	ZNF462	9	109686588	In_Frame_Ins	INS	-	TCGA-05-4410-01A-21D-1855-08	1323016	109686588	31526843	1366	33016											
ZNF462	58499	broad.mit.edu	37	chr9	109701435	109701435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaccactcagggttgaggtGggctgggattcattgccaat	13	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109701435	T	T	109701435	1	4	15	0	1	0	0	0	0	0	0	0	18053	1363	47	2		2	ZNF462	9	109701435	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	14847	109701435	31511996	1367	33017											
PTPN3	5774	broad.mit.edu	37	chr9	112195398	112195398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttcggtacacagcaacaCccgcggaagcaattccaatc	7	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112195398	A	A	112195398	3	1	15	1	0	0	0	0	1	0	0	0	12897	507	18	3	2090	3	PTPN3	9	112195398	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2493963	112195398	29018033	1368	33018											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112705122	112705122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgaggtgcgctcaggagGcaccgtagtagaaaatggag	16	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112705122	T	T	112705122	3	4	15	1	0	0	0	0	1	0	0	0	11504	1203	42	3		3	PALM2-AKAP2	9	112705122	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	509724	112705122	28508309	1369	33019											
SVEP1	79987	broad.mit.edu	37	chr9	113132270	113132270	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtcttacacattttccacCatttaagcagggagactggc	9	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113132270	G	G	113132270	3	3	15	1	0	0	0	0	1	0	0	0	15538	594	21	4	96	4	SVEP1	9	113132270	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	427148	113132270	28081161	1370	33020											
SVEP1	79987	broad.mit.edu	37	chr9	113169032	113169032	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagatcttcaggaggtcCacagttgactggtttacaga	12	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113169032	A	A	113169032	4	1	15	1	0	0	0	0	0	1	0	0	15538	603	21	2	1911	2	SVEP1	9	113169032	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	36762	113169032	28044399	1371	33021											
MUSK	4593	broad.mit.edu	37	chr9	113562990	113562990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtccattttttataacCgctacactacagagtctgat	6	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113562990	A	A	113562990	3	1	15	1	0	0	0	0	1	0	0	0	10083	652	23	1	2422	1	MUSK	9	113562990	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	393958	113562990	27650441	1372	33022											
PTGR1	22949	broad.mit.edu	37	chr9	114359635	114359635	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagctcagctgtcttcaacTcaaagtcactattagtagga	9	9	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114359635	G	G	114359635	3	3	15	1	0	0	0	0	1	0	0	0	12859	1551	54	5	988	5	PTGR1	9	114359635	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	796645	114359635	26853796	1373	33023											
SNX30	401548	broad.mit.edu	37	chr9	115600941	115600941	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagaagacttcctacctgtGctcagggaatatattttata	7	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115600941	C	C	115600941	2	2	15	1	0	0	0	0	0	0	0	1	15014	1306	46	4		4	SNX30	9	115600941	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1241306	115600941	25612490	1374	33024											
ZFP37	7539	broad.mit.edu	37	chr9	115806314	115806314	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttcctttttacacagtttCttgagtgatcaggtaaatct	6	7	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115806314	A	A	115806314	3	1	15	1	0	0	0	0	1	0	0	0	17774	913	32	3	1312	3	ZFP37	9	115806314	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	205373	115806314	25407117	1375	33025											
PRPF4	9128	broad.mit.edu	37	chr9	116048719	116048719	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggctgcaagactggactAtcacaacttcctacacatcc	6	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116048719	C	C	116048719	1	2	15	0	1	0	0	0	0	0	0	0	12676	464	16	5		5	PRPF4	9	116048719	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	242405	116048719	25164712	1376	33026											
COL27A1	85301	broad.mit.edu	37	chr9	116931198	116931198	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcctctaaaaaacccattCccacactagctcggactgag	6	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931198	T	T	116931198	3	4	15	1	0	0	0	0	1	0	0	0	3717	855	30	4	1373	4	COL27A1	9	116931198	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	882479	116931198	24282233	1377	33027											
COL27A1	85301	broad.mit.edu	37	chr9	116945372	116945372	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagtgagtatttgctggaGatgtggccatggagtgggtg	17	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116945372	T	T	116945372	1	4	15	0	1	0	0	0	0	0	0	0	3717	957	33	3		3	COL27A1	9	116945372	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	14174	116945372	24268059	1378	33028											
COL27A1	85301	broad.mit.edu	37	chr9	116956584	116956584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaggatggatgggaagGcatttaagcaagggagcagg	20	3	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116956584	T	T	116956584	1	4	15	0	1	0	0	0	0	0	0	0	3717	1218	42	3		3	COL27A1	9	116956584	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	11212	116956584	24256847	1379	33029											
COL27A1	85301	broad.mit.edu	37	chr9	116956729	116956729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaggaaaggcccacgatGgggcaaaggtaggtttccag	14	10	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116956729	T	T	116956729	3	4	15	1	0	0	0	0	1	0	0	0	3717	1348	47	2	2084	2	COL27A1	9	116956729	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	145	116956729	24256702	1380	33030											
AKNA	80709	broad.mit.edu	37	chr9	117130609	117130609	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggccttgcctccctcCttcccctggcctgaggccag	13	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117130609	T	T	117130609	1	4	15	0	1	0	0	0	0	0	0	0	463	696	24	4		4	AKNA	9	117130609	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	173880	117130609	24082822	1381	33031											
TNC	3371	broad.mit.edu	37	chr9	117838396	117838396	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatattcagttcccggcctCagacctaaggagagaatgtg	10	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117838396	T	T	117838396	2	4	15	1	0	0	0	0	0	0	0	1	16393	813	29	4		4	TNC	9	117838396	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	707787	117838396	23375035	1382	33032											
PAPPA	5069	broad.mit.edu	37	chr9	118974272	118974272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtgggatccaatcctGgctcaggggaaccttgaaca	12	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118974272	T	T	118974272	1	4	15	0	1	0	0	0	0	0	0	0	11526	1363	47	2		2	PAPPA	9	118974272	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1135876	118974272	22239159	1383	33033											
TRAF1	7185	broad.mit.edu	37	chr9	123685979	123685979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttctgtgatgtgccaacGtaccttctcctgagttcgaa	8	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123685979	A	A	123685979	1	1	15	0	1	0	0	0	0	0	0	0	16561	1160	40	4		4	TRAF1	9	123685979	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4711707	123685979	17527452	1384	33034											
DENND1A	57706	broad.mit.edu	37	chr9	126219751	126219751	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaagcacaacagctcgtaCaaagaaaagggggaaaaacc	9	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126219751	G	G	126219751	1	3	15	0	1	0	0	0	0	0	0	0	4466	493	17	4		4	DENND1A	9	126219751	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2533772	126219751	14993680	1385	33035											
SCAI	286205	broad.mit.edu	37	chr9	127730777	127730777	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgcttgttgatcacGtaggttgctagatctctacc	11	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127730777	A	A	127730777	1	1	15	0	1	0	0	0	0	0	0	0	13981	1160	40	4		4	SCAI	9	127730777	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1511026	127730777	13482654	1386	33036											
GARNL3	84253	broad.mit.edu	37	chr9	130111207	130111207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtattgcctcacagccgtGggagccccagtgtttctgca	11	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130111207	T	T	130111207	3	4	15	1	0	0	0	0	1	0	0	0	6303	1357	47	2	1502	2	GARNL3	9	130111207	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2380430	130111207	11102224	1387	33037											
SPTAN1	6709	broad.mit.edu	37	chr9	131346262	131346262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaggtagtgtgaactgGgggctgtggttgggcaagtg	18	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131346262	T	T	131346262	1	4	15	0	1	0	0	0	0	0	0	0	15235	1247	43	2		2	SPTAN1	9	131346262	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1235055	131346262	9867169	1388	33038											
SPTAN1	6709	broad.mit.edu	37	chr9	131356324	131356324	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctgataactctgttactAgggcatcatcattacaaact	5	10	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131356324	G	G	131356324	1	3	15	0	1	0	0	0	0	0	0	0	15235	435	15	5		5	SPTAN1	9	131356324	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	10062	131356324	9857107	1389	33039											
CCBL1	883	broad.mit.edu	37	chr9	131597919	131597919	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggcggaagagcagctgctCccgttcaaagctctcggcta	12	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131597919	T	T	131597919	3	4	15	1	0	0	0	0	1	0	0	0	2758	864	30	4	401	4	CCBL1	9	131597919	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	241595	131597919	9615512	1390	33040											
CCBL1	883	broad.mit.edu	37	chr9	131607654	131607654	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggttgtagtcgatcccgtCtagccttcgggcctgcagct	14	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131607654	A	A	131607654	3	1	15	1	0	0	0	0	1	0	0	0	2758	913	32	3	1285	3	CCBL1	9	131607654	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	9735	131607654	9605777	1391	33041											
LRRC8A	56262	broad.mit.edu	37	chr9	131670448	131670448	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcatcttctacggcctcatCtgcatgtatacactgtggtg	9	11	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131670448	G	G	131670448	3	3	15	1	0	0	0	0	1	0	0	0	9108	903	32	4	1007	4	LRRC8A	9	131670448	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	62794	131670448	9542983	1392	33042											
PPP2R4	5524	broad.mit.edu	37	chr9	131885481	131885481	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctccagagtcactgggtgcGgtggctcacctctgtaatct	12	12	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131885481	C	C	131885481	1	2	15	0	1	0	0	0	0	0	0	0	12492	1131	39	4		4	PPP2R4	9	131885481	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	215033	131885481	9327950	1393	33043											
LAMC3	10319	broad.mit.edu	37	chr9	133962940	133962940	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accagccagacgcaagccacGctccaacaggcgtcccagca	9	18	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133962940	C	C	133962940	2	2	15	1	0	0	0	0	0	0	0	1	8688	1074	38	4		4	LAMC3	9	133962940	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2077459	133962940	7250491	1394	33044											
NUP214	8021	broad.mit.edu	37	chr9	134039265	134039265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgtttcagttttgacaGtgacctggaaagcctgtgca	11	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134039265	T	T	134039265	3	4	15	1	0	0	0	0	1	0	0	0	10857	1029	36	3	2810	3	NUP214	9	134039265	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	76325	134039265	7174166	1395	33045											
NTNG2	84628	broad.mit.edu	37	chr9	135114692	135114692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacggcacagggaacttgCtggaatgcgtgcagggtgca	16	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135114692	A	A	135114692	1	1	15	0	1	0	0	0	0	0	0	0	10800	812	28	3		3	NTNG2	9	135114692	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1075427	135114692	6098739	1396	33046											
SETX	23064	broad.mit.edu	37	chr9	135204107	135204107	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agataatttgtgaaggtctcTgtctatctgagaatccgtta	9	6	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135204107	A	A	135204107	4	1	15	1	0	0	0	0	0	1	0	0	14254	1588	55	5	5223	5	SETX	9	135204107	Nonsense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	89415	135204107	6009324	1397	33047											
C9orf171	389799	broad.mit.edu	37	chr9	135447814	135447814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgttccccacggaggccgatCgccagagagcattaaaagcc	11	14	0	1	rs141309620	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135447814	G	G	135447814	3	3	15	1	0	0	0	0	1	0	0	0	2496	884	31	4	906	4	C9orf171	9	135447814	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	243707	135447814	5765617	1398	33048											
COL5A1	1289	broad.mit.edu	37	chr9	137703228	137703228	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggccccatcggacagcCaggcccctctgtgagtatcc	10	16	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137703228	T	T	137703228	3	4	15	1	0	0	0	0	1	0	0	0	3728	594	21	4	3750	4	COL5A1	9	137703228	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2255414	137703228	3510203	1399	33049											
SOHLH1	402381	broad.mit.edu	37	chr9	138589372	138589372	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagtcccgctggacgctccCgtcccagggtctggcacacc	12	18	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138589372	A	A	138589372	2	1	15	1	0	0	0	0	0	0	0	1	15037	639	23	1		1	SOHLH1	9	138589372	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	886144	138589372	2624059	1400	33050											
SDCCAG3	10807	broad.mit.edu	37	chr9	139297255	139297255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctcaagagtcttcctcCtcgtctttaacttcagaaat	6	12	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139297255	A	A	139297255	3	1	15	1	0	0	0	0	1	0	0	0	14071	680	24	2	18	2	SDCCAG3	9	139297255	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	707883	139297255	1916176	1401	33051											
CLIC3	9022	broad.mit.edu	37	chr9	139889751	139889751	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaggctggggaagctgcggGatgagggggtgggactccat	20	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139889751	T	T	139889751	1	4	15	0	1	0	0	0	0	0	0	0	3559	1189	41	3		3	CLIC3	9	139889751	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	592496	139889751	1323680	1402	33052											
ABCA2	20	broad.mit.edu	37	chr9	139905706	139905706	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagcccgtggcccaggttgTagttggggaaaatgaggaag	17	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139905706	A	A	139905706	3	1	15	1	0	0	0	0	1	0	0	0	32	1638	57	5	1503	5	ABCA2	9	139905706	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	15955	139905706	1307725	1403	33053											
ENTPD2	954	broad.mit.edu	37	chr9	139946604	139946604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacactaagcagaaggacCtgcactggctaaggctggag	12	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139946604	A	A	139946604	1	1	15	0	1	0	0	0	0	0	0	0	5181	696	24	2		2	ENTPD2	9	139946604	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	40898	139946604	1266827	1404	33054											
PNPLA7	375775	broad.mit.edu	37	chr9	140358738	140358738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccaagaggtggggggCcaggaggggacaggcactgg	22	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140358738	A	A	140358738	1	1	15	0	1	0	0	0	0	0	0	0	12265	754	26	3		3	PNPLA7	9	140358738	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	412134	140358738	854693	1405	33055											
ADARB2	105	broad.mit.edu	37	chr10	1229175	1229175	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctgctccggtggtttcctCacccaggtgcccaggccagc	12	16	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1229175	T	T	1229175	2	4	15	1	0	0	0	0	0	0	0	1	283	813	29	4		4	ADARB2	10	1229175	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08		1229175	134305572	1406	33056											
PRKCQ	5588	broad.mit.edu	37	chr10	6498661	6498661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgatgtagtcaggtgtcCcacagaaggtattcgtcttg	14	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6498661	A	A	6498661	3	1	15	1	0	0	0	0	1	0	0	0	12621	623	22	2	514	2	PRKCQ	10	6498661	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5269486	6498661	129036086	1407	33057											
ITIH5	80760	broad.mit.edu	37	chr10	7679180	7679180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctgcacgaacccagcacGcaggactcaccttccccgcg	9	18	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7679180	A	A	7679180	1	1	15	0	1	0	0	0	0	0	0	0	7977	1102	38	4		4	ITIH5	10	7679180	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1180519	7679180	127855567	1408	33058											
ITIH2	3698	broad.mit.edu	37	chr10	7785054	7785054	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaggaatgacatagtgctCaaaatcatcttccttttaat	5	8	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7785054	G	G	7785054	1	3	15	0	1	0	0	0	0	0	0	0	7974	841	29	4		4	ITIH2	10	7785054	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	105874	7785054	127749693	1409	33059											
GATA3	2625	broad.mit.edu	37	chr10	8100776	8100776	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccggcttcggatgcaaGtccaggcccaaggcccggtc	12	17	0	0	rs28395792		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8100776	A	A	8100776	2	1	15	1	0	0	0	0	0	0	0	1	6317	1020	36	4		4	GATA3	10	8100776	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	315722	8100776	127433971	1410	33060											
CELF2	10659	broad.mit.edu	37	chr10	11371046	11371046	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaggctccctgctctcatTttagctttcttagggtaagt	9	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11371046	G	G	11371046	1	3	15	0	1	0	0	0	0	0	0	0	3246	1856	64	5		5	CELF2	10	11371046	3'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	3270270	11371046	124163701	1411	33061											
FAM107B	83641	broad.mit.edu	37	chr10	14816390	14816390	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagtgcggtgacttgaattCcgattcgcactgccatttct	10	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14816390	A	A	14816390	2	1	15	1	0	0	0	0	0	0	0	1	5436	842	30	3		3	FAM107B	10	14816390	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3445344	14816390	120718357	1412	33062											
DCLRE1C	64421	broad.mit.edu	37	chr10	14974866	14974866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtaccttgggatgccggCatgcatggatctgagtgttg	14	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14974866	A	A	14974866	3	1	15	1	0	0	0	0	1	0	0	0	4329	710	25	3	1335	3	DCLRE1C	10	14974866	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	158476	14974866	120559881	1413	33063											
NMT2	9397	broad.mit.edu	37	chr10	15210430	15210430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccagtcctgggagccacCcccgaacgggagaccgtggc	13	18	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15210430	A	A	15210430	1	1	15	0	1	0	0	0	0	0	0	0	10599	638	22	2		2	NMT2	10	15210430	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	235564	15210430	120324317	1414	33064											
CUBN	8029	broad.mit.edu	37	chr10	16990393	16990393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaactggctcccaactaCgaaggtcagagtccccaata	9	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16990393	A	A	16990393	1	1	15	0	1	0	0	0	0	0	0	0	4084	551	19	3		3	CUBN	10	16990393	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1779963	16990393	118544354	1415	33065											
CUBN	8029	broad.mit.edu	37	chr10	16990513	16990513	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccgtggtgtggaaaccccCagcactgatgctagaatcag	12	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16990513	T	T	16990513	3	4	15	1	0	0	0	0	1	0	0	0	4084	594	21	4	5830	4	CUBN	10	16990513	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	120	16990513	118544234	1416	33066											
ST8SIA6	338596	broad.mit.edu	37	chr10	17369028	17369028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttacctaaaaacgaagtcgGatttatctatttcagttcca	5	9	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17369028	T	T	17369028	3	4	15	1	0	0	0	0	1	0	0	0	15354	1174	41	3	588	3	ST8SIA6	10	17369028	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	378515	17369028	118165719	1417	33067											
SLC39A12	221074	broad.mit.edu	37	chr10	18242230	18242230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccggacaaagctctcaGtatcctgggtgccattgttt	10	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18242230	T	T	18242230	3	4	15	1	0	0	0	0	1	0	0	0	14729	1029	36	3	27	3	SLC39A12	10	18242230	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	873202	18242230	117292517	1418	33068											
CACNB2	783	broad.mit.edu	37	chr10	18439905	18439905	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatagttttgttcgccagGtaagagttttaagttcatgg	10	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18439905	T	T	18439905	5	4	15	1	0	0	0	0	0	0	1	0	2579	1275	44	3	260	3	CACNB2	10	18439905	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	197675	18439905	117094842	1419	33069											
SPAG6	9576	broad.mit.edu	37	chr10	22680766	22680766	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacactcctgaacacgcaCgggctgttgcagtcacaaat	9	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22680766	A	A	22680766	2	1	15	1	0	0	0	0	0	0	0	1	15098	527	19	3		3	SPAG6	10	22680766	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	4240861	22680766	112853981	1420	33070											
ARHGAP21	57584	broad.mit.edu	37	chr10	24910126	24910126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtgtcagtactggtgtaCtggtttgctgtttgctcaat	12	6	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24910126	A	A	24910126	3	1	15	1	0	0	0	0	1	0	0	0	873	565	20	3	5250	3	ARHGAP21	10	24910126	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2229360	24910126	110624621	1421	33071											
GPR158	57512	broad.mit.edu	37	chr10	25887045	25887045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagagaccaaacggaagaGtccagtagcctacccacaga	11	11	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25887045	T	T	25887045	3	4	15	1	0	0	0	0	1	0	0	0	6728	1020	36	3	2532	3	GPR158	10	25887045	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	976919	25887045	109647702	1422	33072											
MYO3A	53904	broad.mit.edu	37	chr10	26243965	26243965	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcagcatcatttgtatggGtggaaacttagagtgtggtt	13	4	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26243965	C	C	26243965	1	2	15	0	1	0	0	0	0	0	0	0	10170	1276	44	4		4	MYO3A	10	26243965	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	356920	26243965	109290782	1423	33073											
MYO3A	53904	broad.mit.edu	37	chr10	26457663	26457663	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccttaagtattatcacgTggagcagttaaatctaatgc	8	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26457663	A	A	26457663	3	1	15	1	0	0	0	0	1	0	0	0	10170	1696	59	5	3236	5	MYO3A	10	26457663	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	213698	26457663	109077084	1424	33074											
MYO3A	53904	broad.mit.edu	37	chr10	26465558	26465558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgctggtaaggcgtttccCagcccccggtgcctgcagaa	13	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26465558	A	A	26465558	1	1	15	0	1	0	0	0	0	0	0	0	10170	609	21	2		2	MYO3A	10	26465558	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7895	26465558	109069189	1425	33075											
GAD2	2572	broad.mit.edu	37	chr10	26512676	26512676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttgtgcatacacacgtGtgtacatgttggatttctac	9	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26512676	T	T	26512676	1	4	15	0	1	0	0	0	0	0	0	0	6240	1392	48	3		3	GAD2	10	26512676	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	47118	26512676	109022071	1426	33076											
GAD2	2572	broad.mit.edu	37	chr10	26518625	26518625	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacatgtatgccatgatgatCgcacgctttaagatgttccc	8	10	0	3	rs145045666		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26518625	A	A	26518625	2	1	15	1	0	0	0	0	0	0	0	1	6240	874	31	3		3	GAD2	10	26518625	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	5949	26518625	109016122	1427	33077											
SVIL	6840	broad.mit.edu	37	chr10	29779864	29779864	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagatcttctcttgccgcCagcattttcagggggttttt	11	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29779864	A	A	29779864	2	1	15	1	0	0	0	0	0	0	0	1	15539	581	21	2		2	SVIL	10	29779864	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3261239	29779864	105754883	1428	33078											
SVIL	6840	broad.mit.edu	37	chr10	29784046	29784046	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggtttggaaacgggtgtGgtgcctcttgttttaccgca	15	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29784046	A	A	29784046	2	1	15	1	0	0	0	0	0	0	0	1	15539	1335	47	4		4	SVIL	10	29784046	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	4182	29784046	105750701	1429	33079											
SVIL	6840	broad.mit.edu	37	chr10	29812503	29812503	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catggaaaattccttcggttCatccccgaggtgggtgatgg	13	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29812503	T	T	29812503	3	4	15	1	0	0	0	0	1	0	0	0	15539	835	29	4	3700	4	SVIL	10	29812503	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	28457	29812503	105722244	1430	33080											
ZEB1	6935	broad.mit.edu	37	chr10	31750000	31750000	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtggtagaaacaaattcAgattcagatgatgaagacaa	9	5	2	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31750000	G	G	31750000	2	3	15	1	0	0	0	0	0	0	0	1	17749	175	7	5		5	ZEB1	10	31750000	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1937497	31750000	103784747	1431	33081											
ANKRD30A	91074	broad.mit.edu	37	chr10	37486372	37486372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtctgttccaaataaaGccttggaattgaagaatgaa	8	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37486372	A	A	37486372	3	1	15	1	0	0	0	0	1	0	0	0	658	971	34	4	2626	4	ANKRD30A	10	37486372	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5736372	37486372	98048375	1432	33082											
ANKRD30A	91074	broad.mit.edu	37	chr10	37490350	37490350	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgaagaaaattacctccTaaatgcaaaccatggaaaaa	6	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37490350	A	A	37490350	1	1	15	0	1	0	0	0	0	0	0	0	658	1537	53	5		5	ANKRD30A	10	37490350	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	3978	37490350	98044397	1433	33083											
ANKRD30A	91074	broad.mit.edu	37	chr10	37508538	37508538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaatgaaggaagctgaaCacatgtatcaaaacgaacaa	8	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37508538	A	A	37508538	3	1	15	1	0	0	0	0	1	0	0	0	658	478	17	3	3864	3	ANKRD30A	10	37508538	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	18188	37508538	98026209	1434	33084											
ZNF33A	7581	broad.mit.edu	37	chr10	38353108	38353108	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccaggactggaagatccAtggccttcccttcttccaaa	7	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38353108	T	T	38353108	1	4	15	0	1	0	0	0	0	0	0	0	17980	232	8	5		5	ZNF33A	10	38353108	3'UTR	SNP	A	TCGA-05-4410-01A-21D-1855-08	844570	38353108	97181639	1435	33085											
BMS1	9790	broad.mit.edu	37	chr10	43287086	43287086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtttagggtgccaagctGttctacctttctggaatggt	11	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43287086	T	T	43287086	2	4	15	1	0	0	0	0	0	0	0	1	1478	1364	48	3		3	BMS1	10	43287086	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	4933978	43287086	92247661	1436	33086											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43650913	43650913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaatgtaggggctaatGgcataggctatcagagcaac	14	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43650913	T	T	43650913	3	4	15	1	0	0	0	0	1	0	0	0	3973	1348	47	2	318	2	CSGALNACT2	10	43650913	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	363827	43650913	91883834	1437	33087											
CXCL12	6387	broad.mit.edu	37	chr10	44871442	44871442	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcgcttcttttttcctAtcttttcttttttccccact	2	13	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44871442	G	G	44871442	1	3	15	0	1	0	0	0	0	0	0	0	4113	449	16	5		5	CXCL12	10	44871442	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1220529	44871442	90663305	1438	33088											
RASSF4	83937	broad.mit.edu	37	chr10	45487493	45487493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgggtcctgaacatcaGggcaggtctgcaaagcacag	13	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45487493	T	T	45487493	1	4	15	0	1	0	0	0	0	0	0	0	13196	1015	35	2		2	RASSF4	10	45487493	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	616051	45487493	90047254	1439	33089											
ALOX5	240	broad.mit.edu	37	chr10	45920275	45920275	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggggcagcagttggaGctgtgcccatccagggagca	18	10	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45920275	C	C	45920275	1	2	15	0	1	0	0	0	0	0	0	0	540	986	34	4		4	ALOX5	10	45920275	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	432782	45920275	89614472	1440	33090											
GPRIN2	9721	broad.mit.edu	37	chr10	46999701	46999701	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgggctgcaggctcagcAtggggtgaagatccactgta	15	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46999701	C	C	46999701	3	2	15	1	0	0	0	0	1	0	0	0	6796	217	8	5	823	5	GPRIN2	10	46999701	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1079426	46999701	88535046	1441	33091											
FRMPD2	143162	broad.mit.edu	37	chr10	49409474	49409474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacactgatcatccacaaccCtccactgacgcacaactgca	4	17	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49409474	A	A	49409474	1	1	15	0	1	0	0	0	0	0	0	0	6118	696	24	2		2	FRMPD2	10	49409474	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2409773	49409474	86125273	1442	33092											
C10orf71	118461	broad.mit.edu	37	chr10	50531576	50531576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccctgccaggtccaggCcagctgcagtcaggaagaga	12	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50531576	A	A	50531576	3	1	15	1	0	0	0	0	1	0	0	0	1625	739	26	3	988	3	C10orf71	10	50531576	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1122102	50531576	85003171	1443	33093											
PCDH15	65217	broad.mit.edu	37	chr10	55566950	55566950	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattaaaaaggcaatgattAcattgcctgtgaaatccaaa	6	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55566950	T	T	55566950	1	4	15	0	1	0	0	0	0	0	0	0	11605	406	14	5		5	PCDH15	10	55566950	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	5035374	55566950	79967797	1444	33094											
PCDH15	65217	broad.mit.edu	37	chr10	56138610	56138610	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaggatccatcaacacccAgtaatccacattatccttta	3	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138610	T	T	56138610	3	4	15	1	0	0	0	0	1	0	0	0	11605	188	7	5	7381	5	PCDH15	10	56138610	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	571660	56138610	79396137	1445	33095											
PCDH15	65217	broad.mit.edu	37	chr10	56360517	56360517	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattgacagcttcaaaacagAacagattctcccataggggc	9	10	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56360517	T	T	56360517	1	4	15	0	1	0	0	0	0	0	0	0	11605	261	9	5		5	PCDH15	10	56360517	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	221907	56360517	79174230	1446	33096											
BICC1	80114	broad.mit.edu	37	chr10	60577388	60577388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgacaggaagcaatggctGtaacttaaatagctctttca	9	8	2	1	rs141599424		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60577388	A	A	60577388	3	1	15	1	0	0	0	0	1	0	0	0	1433	1377	48	4	2674	4	BICC1	10	60577388	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4216871	60577388	74957359	1447	33097											
MYPN	84665	broad.mit.edu	37	chr10	69881444	69881444	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatttggcaagactggccatCaattacgaccctttggagaa	9	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69881444	G	G	69881444	3	3	15	1	0	0	0	0	1	0	0	0	10192	816	29	4	251	4	MYPN	10	69881444	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	9304056	69881444	65653303	1448	33098											
TET1	80312	broad.mit.edu	37	chr10	70332962	70332962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgattcttacctggatccCattaaaagtgaacatgattg	7	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70332962	A	A	70332962	2	1	15	1	0	0	0	0	0	0	0	1	15891	581	21	2		2	TET1	10	70332962	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	451518	70332962	65201785	1449	33099											
SUPV3L1	6832	broad.mit.edu	37	chr10	70945879	70945879	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcttacggtacagcttggtCaggactgtacgacccctcat	9	13	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70945879	T	T	70945879	1	4	15	0	1	0	0	0	0	0	0	0	15520	841	29	4		4	SUPV3L1	10	70945879	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	612917	70945879	64588868	1450	33100											
HKDC1	80201	broad.mit.edu	37	chr10	71025520	71025520	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagaagaccaggggctagAgcacctgaggatcactgtgg	16	8	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71025520	T	T	71025520	3	4	15	1	0	0	0	0	1	0	0	0	7260	304	11	5	2618	5	HKDC1	10	71025520	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	79641	71025520	64509227	1451	33101											
COL13A1	1305	broad.mit.edu	37	chr10	71634931	71634931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgtgtggtgagttggccCgtttgtacctgctcaggtgg	17	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71634931	A	A	71634931	1	1	15	0	1	0	0	0	0	0	0	0	3702	667	23	1		1	COL13A1	10	71634931	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	609411	71634931	63899816	1452	33102											
SFTPA1	653509	broad.mit.edu	37	chr10	81371568	81371568	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctgcaggagcagcgaCtggacccagagccatgtggc	13	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81371568	G	G	81371568	1	3	15	0	1	0	0	0	0	0	0	0	14302	565	20	4		4	SFTPA1	10	81371568	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	9736637	81371568	54163179	1453	33103											
NRG3	10718	broad.mit.edu	37	chr10	84118550	84118550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaaccctgccgagacaaGgaccttgcatactgtctcaa	7	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84118550	T	T	84118550	3	4	15	1	0	0	0	0	1	0	0	0	10744	991	35	2	1053	2	NRG3	10	84118550	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2746982	84118550	51416197	1454	33104											
NRG3	10718	broad.mit.edu	37	chr10	84498377	84498377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgttgtgatcaatttctgcCgaaaactgattccatcttat	6	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84498377	A	A	84498377	3	1	15	1	0	0	0	0	1	0	0	0	10744	652	23	1	1176	1	NRG3	10	84498377	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	379827	84498377	51036370	1455	33105											
LIPN	643418	broad.mit.edu	37	chr10	90537778	90537778	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccacagagtcatccccctAtatatgacctgactgccatg	6	15	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90537778	T	T	90537778	3	4	15	1	0	0	0	0	1	0	0	0	8902	449	16	5	1010	5	LIPN	10	90537778	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	6039401	90537778	44996969	1456	33106											
STAMBPL1	57559	broad.mit.edu	37	chr10	90672775	90672775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctagcattttctctgtctGcttgaagactgaaaatgtct	7	8	4	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90672775	T	T	90672775	1	4	15	0	1	0	0	0	0	0	0	0	15369	1334	46	3		3	STAMBPL1	10	90672775	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	134997	90672775	44861972	1457	33107											
STAMBPL1	57559	broad.mit.edu	37	chr10	90703677	90703677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagatctagtgagttggGggacagaggagaaacacaat	14	6	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90703677	T	T	90703677	1	4	15	0	1	0	0	0	0	0	0	0	15369	1247	43	2		2	STAMBPL1	10	90703677	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	30902	90703677	44831070	1458	33108											
PCGF5	84333	broad.mit.edu	37	chr10	93011157	93011157	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgctatctgtctagattGtttacgaaataatgggcaat	8	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93011157	A	A	93011157	3	1	15	1	0	0	0	0	1	0	0	0	11671	1377	48	4	452	4	PCGF5	10	93011157	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2307480	93011157	42523590	1459	33109											
TCTN3	26123	broad.mit.edu	37	chr10	97444227	97444227	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccaatatttcttcccctcTaaatcccctataagagaagg	4	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97444227	C	C	97444227	1	2	15	0	1	0	0	0	0	0	0	0	15846	1537	53	5		5	TCTN3	10	97444227	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	4433070	97444227	38090520	1460	33110											
RRP12	23223	broad.mit.edu	37	chr10	99153593	99153593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagagtgggggaacatGtgcccagcagaacagttgtg	16	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99153593	T	T	99153593	1	4	15	0	1	0	0	0	0	0	0	0	13797	1392	48	3		3	RRP12	10	99153593	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1709366	99153593	36381154	1461	33111											
CNNM1	26507	broad.mit.edu	37	chr10	101090517	101090517	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtctccgagatcctgcGcagcggctacactcgcatcc	9	17	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101090517	T	T	101090517	3	4	15	1	0	0	0	0	1	0	0	0	3644	1087	38	3	1375	3	CNNM1	10	101090517	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1936924	101090517	34444230	1462	33112											
GOT1	2805	broad.mit.edu	37	chr10	101165669	101165669	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgatgggaatattgggagAcagagtcagcagcagattgg	15	5	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101165669	C	C	101165669	1	2	15	0	1	0	0	0	0	0	0	0	6643	290	10	5		5	GOT1	10	101165669	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	75152	101165669	34369078	1463	33113											
ABCC2	1244	broad.mit.edu	37	chr10	101560336	101560336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggtaagcagaatacggCaggtatcaccaaagaaaatc	10	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101560336	A	A	101560336	1	1	15	0	1	0	0	0	0	0	0	0	53	725	25	3		3	ABCC2	10	101560336	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	394667	101560336	33974411	1464	33114											
PSD	5662	broad.mit.edu	37	chr10	104170620	104170620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccccgccccccaccttgaGcagctccctagggaagtcgc	10	19	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104170620	T	T	104170620	3	4	15	1	0	0	0	0	1	0	0	0	12752	971	34	3	1020	3	PSD	10	104170620	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2610284	104170620	31364127	1465	33115											
CALHM2	51063	broad.mit.edu	37	chr10	105209507	105209507	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatgaagagcaccagggcGggcacgccgatggccgccag	16	12	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105209507	A	A	105209507	2	1	15	1	0	0	0	0	0	0	0	1	2609	1103	39	4		4	CALHM2	10	105209507	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1038887	105209507	30325240	1466	33116											
SORCS3	22986	broad.mit.edu	37	chr10	106960943	106960943	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccaggagctcagtgtgcCctgggccgagaccactcagg	14	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106960943	T	T	106960943	2	4	15	1	0	0	0	0	0	0	0	1	15046	610	22	4		4	SORCS3	10	106960943	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1751436	106960943	28573804	1467	33117											
SORCS3	22986	broad.mit.edu	37	chr10	106974285	106974285	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgtgccctggaaaagccCctcggggcctccatgtggtg	14	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106974285	T	T	106974285	3	4	15	1	0	0	0	0	1	0	0	0	15046	623	22	4	2531	4	SORCS3	10	106974285	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	13342	106974285	28560462	1468	33118											
SORCS1	114815	broad.mit.edu	37	chr10	108337101	108337101	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaacacaaagttagtggtCatgaaggatgatgtacttga	10	4	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108337101	A	A	108337101	1	1	15	0	1	0	0	0	0	0	0	0	15044	841	29	3		3	SORCS1	10	108337101	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	1362816	108337101	27197646	1469	33119											
SORCS1	114815	broad.mit.edu	37	chr10	108447971	108447971	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaagcagtgcacggggtcCccccttagatccgtgtccgg	13	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108447971	T	T	108447971	2	4	15	1	0	0	0	0	0	0	0	1	15044	610	22	4		4	SORCS1	10	108447971	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	110870	108447971	27086776	1470	33120											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199464	118199464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattgacagggacctctgGgtttttcttcttatgttctt	8	7	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118199464	T	T	118199464	1	4	15	0	1	0	0	0	0	0	0	0	12247	1247	43	2		2	PNLIPRP3	10	118199464	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	9751493	118199464	17335283	1471	33121											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118231258	118231258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccctttctctccctttcCttcttgtttccttatatcta	1	14	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118231258	A	A	118231258	1	1	15	0	1	0	0	0	0	0	0	0	12247	696	24	2		2	PNLIPRP3	10	118231258	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	31794	118231258	17303489	1472	33122											
KCNK18	338567	broad.mit.edu	37	chr10	118969189	118969189	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttacccgccccctcctctcCaagtggtgccccaaatctct	5	19	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118969189	T	T	118969189	2	4	15	1	0	0	0	0	0	0	0	1	8135	581	21	4		4	KCNK18	10	118969189	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	737931	118969189	16565558	1473	33123											
GRK5	2869	broad.mit.edu	37	chr10	121086101	121086101	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccctcacattagccagtgTgaagacctccgaaggaccat	8	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121086101	A	A	121086101	4	1	15	1	0	0	0	0	0	1	0	0	6858	1702	59	5	132	5	GRK5	10	121086101	Nonsense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	2116912	121086101	14448646	1474	33124											
SEC23IP	11196	broad.mit.edu	37	chr10	121671606	121671606	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatgaatggggcaccacGcaagatggacagacaaggcc	13	11	0	4	rs146017364		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121671606	T	T	121671606	2	4	15	1	0	0	0	0	0	0	0	1	14106	1074	38	3		3	SEC23IP	10	121671606	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	585505	121671606	13863141	1475	33125											
TACC2	10579	broad.mit.edu	37	chr10	123988756	123988756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatactctctttagcctcaaGgcaaaaatgtccagcaaatg	7	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123988756	T	T	123988756	1	4	15	0	1	0	0	0	0	0	0	0	15621	1015	35	2		2	TACC2	10	123988756	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2317150	123988756	11545991	1476	33126											
C10orf88	80007	broad.mit.edu	37	chr10	124697465	124697465	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcaagcttggtagaatTctctccaccaggcagttgtg	9	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124697465	A	A	124697465	3	1	15	1	0	0	0	0	1	0	0	0	1633	1783	62	5	486	5	C10orf88	10	124697465	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	708709	124697465	10837282	1477	33127											
ADAM12	8038	broad.mit.edu	37	chr10	127782644	127782644	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatgattcatcccgaaaTtgtggcccagctcatgtgcc	9	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127782644	C	C	127782644	3	2	15	1	0	0	0	0	1	0	0	0	236	1493	52	5	1825	5	ADAM12	10	127782644	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	3085179	127782644	7752103	1478	33128											
INPP5A	3632	broad.mit.edu	37	chr10	134463936	134463936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagagaactattgtcgaGtgatgcgatgaaagaatata	10	5	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134463936	T	T	134463936	3	4	15	1	0	0	0	0	1	0	0	0	7824	1029	36	3	247	3	INPP5A	10	134463936	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	6681292	134463936	1070811	1479	33129											
INPP5A	3632	broad.mit.edu	37	chr10	134595383	134595383	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccgtgttcctggccttcCgaatcatgcccggggcaggt	13	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134595383	T	T	134595383	4	4	15	1	0	0	0	0	0	1	0	0	7824	644	23	4	1235	4	INPP5A	10	134595383	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	131447	134595383	939364	1480	33130											
KNDC1	85442	broad.mit.edu	37	chr10	135012916	135012916	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacaagggaaccagatgagCagccctgccaccatctcact	8	16	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135012916	G	G	135012916	1	3	15	0	1	0	0	0	0	0	0	0	8497	725	25	4		4	KNDC1	10	135012916	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	417533	135012916	521831	1481	33131											
TALDO1	6888	broad.mit.edu	37	chr11	764307	764307	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccaagccagtgacctggaAaaaatccacctggatgagaa	10	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	764307	G	G	764307	2	3	15	1	0	0	0	0	0	0	0	1	15662	11	1	5		5	TALDO1	11	764307	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08		764307	134242209	1482	33132											
MUC2	4583	broad.mit.edu	37	chr11	1088725	1088725	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacccccggtgccccaaggaCaggcccatctatgaggagga	12	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1088725	G	G	1088725	3	3	15	1	0	0	0	0	1	0	0	0	10069	477	17	4	3612	4	MUC2	11	1088725	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	324418	1088725	133917791	1483	33133											
LSP1	4046	broad.mit.edu	37	chr11	1904748	1904748	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagaggacactgtccaGgacaacctgggggccgcagg	16	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1904748	C	C	1904748	3	2	15	1	0	0	0	0	1	0	0	0	9150	991	35	4	470	4	LSP1	11	1904748	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	816023	1904748	133101768	1484	33134											
TRPM5	29850	broad.mit.edu	37	chr11	2432703	2432703	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgcctgggtggtgacaccGtaggccacgagccacacgct	14	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2432703	A	A	2432703	2	1	15	1	0	0	0	0	0	0	0	1	16714	1140	40	4		4	TRPM5	11	2432703	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	527955	2432703	132573813	1485	33135											
OR51S1	119692	broad.mit.edu	37	chr11	4869754	4869754	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaccttgcaacaccttgcCaatcaggccataggagaaga	8	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4869754	T	T	4869754	3	4	15	1	0	0	0	0	1	0	0	0	11199	594	21	4	289	4	OR51S1	11	4869754	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2437051	4869754	130136762	1486	33136											
OR52N2	390077	broad.mit.edu	37	chr11	5842333	5842333	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtgatcacctatgttgcTgcttttttcacttttttcac	5	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5842333	A	A	5842333	2	1	15	1	0	0	0	0	0	0	0	1	11222	1567	55	5		5	OR52N2	11	5842333	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	972579	5842333	129164183	1487	33137											
FAM160A2	84067	broad.mit.edu	37	chr11	6232933	6232933	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgttcaggggccccgccccGggtgagtagaactggagttg	17	11	1	2	rs139429864		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6232933	A	A	6232933	3	1	15	1	0	0	0	0	1	0	0	0	5515	1115	39	4	200	4	FAM160A2	11	6232933	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	390600	6232933	128773583	1488	33138											
SYT9	143425	broad.mit.edu	37	chr11	7441797	7441797	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgaggctgagaggctgggCagagaccactggagtgaaat	16	7	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7441797	A	A	7441797	2	1	15	1	0	0	0	0	0	0	0	1	15600	697	25	3		3	SYT9	11	7441797	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1208864	7441797	127564719	1489	33139											
CYB5R2	51700	broad.mit.edu	37	chr11	7693862	7693862	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctattccagcacacacaCacacacacacagggcggcgg	10	16	0	0	rs71837321		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7693862	T	T	7693862	1	4	15	0	1	0	0	0	0	0	0	0	4160	493	17	4		4	CYB5R2	11	7693862	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	252065	7693862	127312654	1490	33140											
DENND5A	23258	broad.mit.edu	37	chr11	9225135	9225135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttaacctttacagtcagCctcactgtatctgaacatgg	6	12	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9225135	A	A	9225135	1	1	15	0	1	0	0	0	0	0	0	0	4476	754	26	3		3	DENND5A	11	9225135	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1531273	9225135	125781381	1491	33141											
PTPN5	84867	broad.mit.edu	37	chr11	18750585	18750585	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgccgcccctgcccggcaGagatgcacagtgggggcagg	16	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18750585	A	A	18750585	1	1	15	0	1	0	0	0	0	0	0	0	12899	957	33	4		4	PTPN5	11	18750585	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	9525450	18750585	116255931	1492	33142											
PTPN5	84867	broad.mit.edu	37	chr11	18750644	18750644	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaggtgccccaaaagcCatggagtagcaatcacttgc	13	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18750644	G	G	18750644	1	3	15	0	1	0	0	0	0	0	0	0	12899	609	21	4		4	PTPN5	11	18750644	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	59	18750644	116255872	1493	33143											
SLC6A5	9152	broad.mit.edu	37	chr11	20636271	20636271	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaatacagatcaagaactcGactttctgcatgaccgctta	6	10	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20636271	T	T	20636271	2	4	15	1	0	0	0	0	0	0	0	1	14801	1045	37	3		3	SLC6A5	11	20636271	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1885627	20636271	114370245	1494	33144											
SLC6A5	9152	broad.mit.edu	37	chr11	20636376	20636376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtacttcaagtaagatgaCtttctttttccttttttacc	5	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20636376	A	A	20636376	1	1	15	0	1	0	0	0	0	0	0	0	14801	580	20	3		3	SLC6A5	11	20636376	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	105	20636376	114370140	1495	33145											
SLC6A5	9152	broad.mit.edu	37	chr11	20674102	20674102	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcggtaaacttattcaagAgggagacttggtgatgaagc	12	5	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20674102	G	G	20674102	1	3	15	0	1	0	0	0	0	0	0	0	14801	319	11	5		5	SLC6A5	11	20674102	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	37726	20674102	114332414	1496	33146											
NELL1	4745	broad.mit.edu	37	chr11	21250989	21250989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctacgtggggaacgggaCcatctgcagaggtaggcttg	18	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21250989	A	A	21250989	3	1	15	1	0	0	0	0	1	0	0	0	10428	507	18	3	1592	3	NELL1	11	21250989	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	576887	21250989	113755527	1497	33147											
NELL1	4745	broad.mit.edu	37	chr11	21581833	21581833	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctctgcccctctgggcccTcctgctctggtgactgtcct	10	17	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21581833	C	C	21581833	3	2	15	1	0	0	0	0	1	0	0	0	10428	1551	54	5	1951	5	NELL1	11	21581833	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	330844	21581833	113424683	1498	33148											
MPPED2	744	broad.mit.edu	37	chr11	30516971	30516971	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggacacagaggggaaacgGtagtagtcctgtttaacaag	13	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30516971	A	A	30516971	2	1	15	1	0	0	0	0	0	0	0	1	9836	1256	44	4		4	MPPED2	11	30516971	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	8935138	30516971	104489545	1499	33149											
TCP11L1	55346	broad.mit.edu	37	chr11	33065296	33065296	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgtttttttctttcctagGaaagtgaataaacttaattg	6	4	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33065296	T	T	33065296	1	4	15	0	1	0	0	0	0	0	0	0	15836	1188	41	3		3	TCP11L1	11	33065296	5'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	2548325	33065296	101941220	1500	33150											
CD44	960	broad.mit.edu	37	chr11	35222539	35222539	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtatagatgattcattgcaTagcctacagaagcaagacta	9	7	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35222539	A	A	35222539	1	1	15	0	1	0	0	0	0	0	0	0	3047	1421	49	5		5	CD44	11	35222539	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	2157243	35222539	99783977	1501	33151											
RAG1	5896	broad.mit.edu	37	chr11	36596039	36596039	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaataaagggggccggccCcgccaacatcttctgtcgct	10	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36596039	A	A	36596039	2	1	15	1	0	0	0	0	0	0	0	1	13111	610	22	2		2	RAG1	11	36596039	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1373500	36596039	98410477	1502	33152											
LRRC4C	57689	broad.mit.edu	37	chr11	40137206	40137206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgagcggtgtgaggttagGgatttcccgaaggttgcaca	15	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40137206	T	T	40137206	3	4	15	1	0	0	0	0	1	0	0	0	9095	1232	43	2	1289	2	LRRC4C	11	40137206	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3541167	40137206	94869310	1503	33153											
ACCSL	390110	broad.mit.edu	37	chr11	44071763	44071763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtagatacaggggtgagaCataggagcctgggaagagga	18	4	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44071763	A	A	44071763	1	1	15	0	1	0	0	0	0	0	0	0	134	493	17	3		3	ACCSL	11	44071763	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3934557	44071763	90934753	1504	33154											
ACCSL	390110	broad.mit.edu	37	chr11	44076894	44076894	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccacaaggttcttgttttGcagggtgagtttatgtgaca	11	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44076894	C	C	44076894	1	2	15	0	1	0	0	0	0	0	0	0	134	1334	46	4		4	ACCSL	11	44076894	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	5131	44076894	90929622	1505	33155											
CHST1	8534	broad.mit.edu	37	chr11	45671427	45671427	+	Frame_Shift_Del	DEL	G	-	-													gtggccgccgagtttcgcacGgtgccgtatttgtgcttgcc					rs148878468	byFrequency;by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45671427	-	-	45671427	7	5	15	1	0	1	0	1	0	0	0	0	3428	1103	39	0	192	0	CHST1	11	45671427	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	1594533	45671427	89335089	1506	33156											
PHF21A	51317	broad.mit.edu	37	chr11	46105753	46105753	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccactttaagagcctcctgTagagtctgcaactccatcct	6	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46105753	A	A	46105753	2	1	15	1	0	0	0	0	0	0	0	1	11928	1625	57	5		5	PHF21A	11	46105753	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	434326	46105753	88900763	1507	33157											
MYBPC3	4607	broad.mit.edu	37	chr11	47360129	47360129	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggttcttcactgtgacCgtgtagacgccctcatcttc	9	13	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47360129	A	A	47360129	2	1	15	1	0	0	0	0	0	0	0	1	10107	639	23	1		1	MYBPC3	11	47360129	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1254376	47360129	87646387	1508	33158											
MYBPC3	4607	broad.mit.edu	37	chr11	47361022	47361023	+	Intron	DNP	TG	AT	AT													gcctggaagcgcccctctgcTgcttcttccaccccctgacc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	47361023	AT	AT	47361022	1	1	15	0	1	0	0	0	0	0	0	0	10107	1595	55	5		5	MYBPC3	11	47361022	Intron	DNP	TG	TCGA-05-4410-01A-21D-1855-08	893	47361022	87645494	1509	33159											
MYBPC3	4607	broad.mit.edu	37	chr11	47361429	47361429	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctcaagagcctgggccCctggttattggttttttaga	12	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47361429	T	T	47361429	1	4	15	0	1	0	0	0	0	0	0	0	10107	638	22	4		4	MYBPC3	11	47361429	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	407	47361429	87645087	1510	33160											
CELF1	10658	broad.mit.edu	37	chr11	47499059	47499059	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacaagcacacactggcaGagggctggtccctgacaaag	12	11	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47499059	C	C	47499059	1	2	15	0	1	0	0	0	0	0	0	0	3245	957	33	4		4	CELF1	11	47499059	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	137630	47499059	87507457	1511	33161											
FOLH1	2346	broad.mit.edu	37	chr11	49186290	49186290	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtgtaccaagctgtacatCagcggtgtacaatcaactct	8	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49186290	G	G	49186290	2	3	15	1	0	0	0	0	0	0	0	1	6037	813	29	4		4	FOLH1	11	49186290	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1687231	49186290	85820226	1512	33162											
FOLH1	2346	broad.mit.edu	37	chr11	49229960	49229960	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcgtgaaggagattccacAtctcggcgcgagcagagccg	13	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49229960	T	T	49229960	3	4	15	1	0	0	0	0	1	0	0	0	6037	217	8	5	2326	5	FOLH1	11	49229960	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	43670	49229960	85776556	1513	33163											
OR4C16	219428	broad.mit.edu	37	chr11	55339563	55339563	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttttttttttgcaggtaGaccatttcacacttgcccct	5	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55339563	T	T	55339563	1	4	15	0	1	0	0	0	0	0	0	0	11143	957	33	3		3	OR4C16	11	55339563	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	6109603	55339563	79666953	1514	33164											
OR5L1	219437	broad.mit.edu	37	chr11	55579417	55579417	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacggtgtgttctctgattCatttgtgcttagctcttagg	12	7	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579417	A	A	55579417	3	1	15	1	0	0	0	0	1	0	0	0	11264	826	29	3	477	3	OR5L1	11	55579417	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	239854	55579417	79427099	1515	33165											
OR5F1	338674	broad.mit.edu	37	chr11	55761205	55761205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaattacattcgctaaagcCttctttacttccttactcct	2	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55761205	A	A	55761205	3	1	15	1	0	0	0	0	1	0	0	0	11252	680	24	2	50	2	OR5F1	11	55761205	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	181788	55761205	79245311	1516	33166											
OR5F1	338674	broad.mit.edu	37	chr11	55761253	55761253	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagatcagaggattcaacatGggaatcaccactgtgtagaa	10	7	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55761253	C	C	55761253	2	2	15	1	0	0	0	0	0	0	0	1	11252	1335	47	4		4	OR5F1	11	55761253	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	48	55761253	79245263	1517	33167											
OR5AS1	219447	broad.mit.edu	37	chr11	55798679	55798679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtttatgtacttacagcCcaccactagctattccctag	5	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55798679	A	A	55798679	3	1	15	1	0	0	0	0	1	0	0	0	11240	623	22	2	787	2	OR5AS1	11	55798679	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	37426	55798679	79207837	1518	33168											
OR8H2	390151	broad.mit.edu	37	chr11	55873273	55873273	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgggagtcaccatcttttAtagcactctgatttttactt	6	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55873273	G	G	55873273	3	3	15	1	0	0	0	0	1	0	0	0	11332	449	16	5	757	5	OR8H2	11	55873273	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	74594	55873273	79133243	1519	33169											
OR8H2	390151	broad.mit.edu	37	chr11	55873419	55873419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagaggtgaaaaatgctGtcatcagagtcatgcagaga	11	6	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55873419	T	T	55873419	3	4	15	1	0	0	0	0	1	0	0	0	11332	1377	48	3	903	3	OR8H2	11	55873419	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	146	55873419	79133097	1520	33170											
OR8H3	390152	broad.mit.edu	37	chr11	55890240	55890240	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgatctgcagtcctctacActacacagttattatgccca	6	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890240	T	T	55890240	3	4	15	1	0	0	0	0	1	0	0	0	11333	159	6	5	394	5	OR8H3	11	55890240	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	16821	55890240	79116276	1521	33171											
OR8J3	81168	broad.mit.edu	37	chr11	55904371	55904371	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaccaatgtgtaaaacacaGaagccatcttatcagtatcc	5	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904371	T	T	55904371	3	4	15	1	0	0	0	0	1	0	0	0	11336	942	33	3	125	3	OR8J3	11	55904371	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	14131	55904371	79102145	1522	33172											
OR8J3	81168	broad.mit.edu	37	chr11	55905109	55905109	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagagcactaggaagaccAggaagaggggaatctggagc	15	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55905109	T	T	55905109	3	4	15	1	0	0	0	0	1	0	0	0	11336	188	7	5	863	5	OR8J3	11	55905109	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	738	55905109	79101407	1523	33173											
OR5T1	390155	broad.mit.edu	37	chr11	56043987	56043987	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtgtcaatattttatacCattgtgattcccatgctgaa	6	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56043987	A	A	56043987	2	1	15	1	0	0	0	0	0	0	0	1	11275	581	21	2		2	OR5T1	11	56043987	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	138878	56043987	78962529	1524	33174											
OR8J1	219477	broad.mit.edu	37	chr11	56127765	56127765	+	Missense_Mutation	SNP	A	T	T													gagtcactgagtttattcttAcaggtgtctctagctgtcca							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56127765	T	T	56127765	3	4	15	1	0	0	0	0	1	0	0	0	11335	391	14	5	45	5	OR8J1	11	56127765	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	83778	56127765	78878751	1525	33175	192	2									
OR8J1	219477	broad.mit.edu	37	chr11	56127775	56127775	+	Missense_Mutation	SNP	C	T	T													gtttattcttacaggtgtctCtagctgtccagagctccaga							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56127775	T	T	56127775	3	4	15	1	0	0	0	0	1	0	0	0	11335	913	32	4	55	4	OR8J1	11	56127775	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	10	56127775	78878741	1526	33176	192	2									
OR5M1	390168	broad.mit.edu	37	chr11	56380835	56380835	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtgggaattggtcctgatCagcaggatcatgcacaggtt	14	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56380835	A	A	56380835	2	1	15	1	0	0	0	0	0	0	0	1	11266	813	29	3		3	OR5M1	11	56380835	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	253060	56380835	78625681	1527	33177											
APLNR	187	broad.mit.edu	37	chr11	57004333	57004333	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgaaacacggtccagagcAccagaccgttgcccgtggtg	12	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57004333	T	T	57004333	3	4	15	1	0	0	0	0	1	0	0	0	779	159	6	5	1000	5	APLNR	11	57004333	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	623498	57004333	78002183	1528	33178											
SLC43A3	29015	broad.mit.edu	37	chr11	57177518	57177518	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggactgaggcacagagggcGaagcccaggcacagcaggga	18	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57177518	A	A	57177518	2	1	15	1	0	0	0	0	0	0	0	1	14748	1049	37	4		4	SLC43A3	11	57177518	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	173185	57177518	77828998	1529	33179											
OR9I1	219954	broad.mit.edu	37	chr11	57886367	57886367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaggcaagcttcagcaGgggtgggaggtcacagaaga	16	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57886367	T	T	57886367	3	4	15	1	0	0	0	0	1	0	0	0	11347	991	35	2	398	2	OR9I1	11	57886367	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	708849	57886367	77120149	1530	33180											
OR9Q2	219957	broad.mit.edu	37	chr11	57958771	57958771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacaggccagtcctccgaggGagaccgagtggtgtctgtgc	15	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57958771	T	T	57958771	3	4	15	1	0	0	0	0	1	0	0	0	11350	1174	41	3	811	3	OR9Q2	11	57958771	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	72404	57958771	77047745	1531	33181											
OR5B17	219965	broad.mit.edu	37	chr11	58126446	58126446	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagtcagagtgatgaggtAgatgagggtaaacatgataa	13	5	1	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58126446	T	T	58126446	3	4	15	1	0	0	0	0	1	0	0	0	11243	420	15	5	849	5	OR5B17	11	58126446	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	167675	58126446	76880070	1532	33182											
OR5B3	441608	broad.mit.edu	37	chr11	58170886	58170886	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcttattttccatcacTgctctgggggactcacagga	9	11	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58170886	A	A	58170886	1	1	15	0	1	0	0	0	0	0	0	0	11246	1595	55	5		5	OR5B3	11	58170886	5'Flank	SNP	T	TCGA-05-4410-01A-21D-1855-08	44440	58170886	76835630	1533	33183											
OR4D10	390197	broad.mit.edu	37	chr11	59245584	59245584	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattatcattacccaagtctCaggcaggagagggcaggagg	13	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59245584	G	G	59245584	3	3	15	1	0	0	0	0	1	0	0	0	11148	827	29	4	684	4	OR4D10	11	59245584	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1074698	59245584	75760932	1534	33184											
GIF	2694	broad.mit.edu	37	chr11	59597021	59597021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtagtcagcaacccctGgaaataagcagagaataaca	9	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59597021	T	T	59597021	1	4	15	0	1	0	0	0	0	0	0	0	6440	1363	47	2		2	GIF	11	59597021	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	351437	59597021	75409495	1535	33185											
MS4A2	2206	broad.mit.edu	37	chr11	59860356	59860356	+	Intron	DEL	A	-	-													tctgtctttgtccatccttgAaaagataagaagaacagagt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59860356	-	-	59860356	6	5	15	0	1	1	0	1	0	0	0	0	9954	261	9	0		0	MS4A2	11	59860356	Intron	DEL	A	TCGA-05-4410-01A-21D-1855-08	263335	59860356	75146160	1536	33186											
MS4A14	84689	broad.mit.edu	37	chr11	60164178	60164178	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttctgaagggagagccaAgagtcttgggggtaagtcct	14	6	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60164178	T	T	60164178	4	4	15	1	0	0	0	0	0	1	0	0	9952	64	3	5	129	5	MS4A14	11	60164178	Nonsense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	303822	60164178	74842338	1537	33187											
MS4A14	84689	broad.mit.edu	37	chr11	60170262	60170262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccttccaatcatactgaCctgatggaacaactcttccc	5	14	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60170262	A	A	60170262	1	1	15	0	1	0	0	0	0	0	0	0	9952	522	18	3		3	MS4A14	11	60170262	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	6084	60170262	74836254	1538	33188											
MS4A12	54860	broad.mit.edu	37	chr11	60269328	60269328	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagttactccagaaaattcAgaagtgcgagagaaaatttt	9	5	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60269328	T	T	60269328	1	4	15	0	1	0	0	0	0	0	0	0	9950	203	7	5		5	MS4A12	11	60269328	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	99066	60269328	74737188	1539	33189											
MS4A10	341116	broad.mit.edu	37	chr11	60561426	60561426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctttggacagctgttacCtttatttttcacctatagaa	5	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60561426	A	A	60561426	1	1	15	0	1	0	0	0	0	0	0	0	9949	696	24	2		2	MS4A10	11	60561426	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	292098	60561426	74445090	1540	33190											
MS4A10	341116	broad.mit.edu	37	chr11	60561637	60561637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctgccttggatttggcCaacaggaggtttccagctca	13	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60561637	A	A	60561637	1	1	15	0	1	0	0	0	0	0	0	0	9949	609	21	2		2	MS4A10	11	60561637	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	211	60561637	74444879	1541	33191											
PGA5	5222	broad.mit.edu	37	chr11	61017555	61017555	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacagagtccccttctgcaGagggaaagtacacttccacg	9	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61017555	A	A	61017555	1	1	15	0	1	0	0	0	0	0	0	0	11867	957	33	4		4	PGA5	11	61017555	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	455918	61017555	73988961	1542	33192											
C11orf9	745	broad.mit.edu	37	chr11	61539444	61539444	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgagtgccctacaacactCcccactcctccaggcccccc	6	21	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61539444	A	A	61539444	1	1	15	0	1	0	0	0	0	0	0	0	1683	870	30	3		3	C11orf9	11	61539444	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	521889	61539444	73467072	1543	33193											
ASRGL1	80150	broad.mit.edu	37	chr11	62159785	62159785	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagattgtattccagatgctAgcttagaggtcaagtacagt	10	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62159785	G	G	62159785	1	3	15	0	1	0	0	0	0	0	0	0	1064	435	15	5		5	ASRGL1	11	62159785	3'UTR	SNP	A	TCGA-05-4410-01A-21D-1855-08	620341	62159785	72846731	1544	33194											
AHNAK	79026	broad.mit.edu	37	chr11	62302694	62302694	+	Intron	DEL	C	-	-													agagcaggaagcaggtaaggCccaaagagcctcagggaaac							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62302694	-	-	62302694	6	5	15	0	1	1	0	1	0	0	0	0	414	754	26	0		0	AHNAK	11	62302694	Intron	DEL	C	TCGA-05-4410-01A-21D-1855-08	142909	62302694	72703822	1545	33195											
TUT1	64852	broad.mit.edu	37	chr11	62356562	62356562	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctaggaagtactcagagaGctgagcagaatccacatccc	10	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62356562	C	C	62356562	3	2	15	1	0	0	0	0	1	0	0	0	16906	971	34	4	2442	4	TUT1	11	62356562	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	53868	62356562	72649954	1546	33196											
ROM1	6094	broad.mit.edu	37	chr11	62380969	62380969	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctggcagcgggcgcggtGgctctgggcacaggactagt	18	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62380969	A	A	62380969	2	1	15	1	0	0	0	0	0	0	0	1	13632	1335	47	4		4	ROM1	11	62380969	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	24407	62380969	72625547	1547	33197											
SLC3A2	6520	broad.mit.edu	37	chr11	62655812	62655812	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcattcttagggccagagtGaagaccctggctccctcctt	9	13	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62655812	A	A	62655812	3	1	15	1	0	0	0	0	1	0	0	0	14741	1291	45	4	1686	4	SLC3A2	11	62655812	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	274843	62655812	72350704	1548	33198											
SLC22A10	387775	broad.mit.edu	37	chr11	63057612	63057612	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtaaagccattgtgcctccTcttgggggtcacgtgttcac	11	12	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63057612	A	A	63057612	1	1	15	0	1	0	0	0	0	0	0	0	14554	1566	54	5		5	SLC22A10	11	63057612	5'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	401800	63057612	71948904	1549	33199											
MEN1	4221	broad.mit.edu	37	chr11	64574890	64574890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagccctgggaaaggcCaggccaggaattactaaccc	11	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64574890	A	A	64574890	1	1	15	0	1	0	0	0	0	0	0	0	9565	609	21	2		2	MEN1	11	64574890	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1517278	64574890	70431626	1550	33200											
SNX15	29907	broad.mit.edu	37	chr11	64802239	64802239	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctcagagcatctcaggcagGaccaggaaaagtggccttgg	14	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64802239	C	C	64802239	1	2	15	0	1	0	0	0	0	0	0	0	15000	1189	41	4		4	SNX15	11	64802239	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	227349	64802239	70204277	1551	33201											
SNX15	29907	broad.mit.edu	37	chr11	64803193	64803193	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacgtccttgggacagggagGagggcagagccccactagcc	16	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64803193	T	T	64803193	1	4	15	0	1	0	0	0	0	0	0	0	15000	1189	41	3		3	SNX15	11	64803193	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	954	64803193	70203323	1552	33202											
SAC3D1	29901	broad.mit.edu	37	chr11	64812109	64812109	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacgtgcaaggtgttagtGgagagcaaacttcgaggacg	15	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64812109	T	T	64812109	2	4	15	1	0	0	0	0	0	0	0	1	13913	1335	47	2		2	SAC3D1	11	64812109	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	8916	64812109	70194407	1553	33203											
EHBP1L1	254102	broad.mit.edu	37	chr11	65351612	65351612	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctggtgacccctgcaagcTcagagatggggctgttgtgt	14	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65351612	G	G	65351612	1	3	15	0	1	0	0	0	0	0	0	0	5016	1566	54	5		5	EHBP1L1	11	65351612	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	539503	65351612	69654904	1554	33204											
GAL3ST3	89792	broad.mit.edu	37	chr11	65811101	65811101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtgcttggggcgcggcGgcgagttccgcagaggaggg	20	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65811101	T	T	65811101	3	4	15	1	0	0	0	0	1	0	0	0	6261	1116	39	1	1126	1	GAL3ST3	11	65811101	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	459489	65811101	69195415	1555	33205											
CD248	57124	broad.mit.edu	37	chr11	66084211	66084211	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccgcgcagtgggcgctgCagctggcattgccgggcctg	17	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66084211	A	A	66084211	2	1	15	1	0	0	0	0	0	0	0	1	3019	697	25	3		3	CD248	11	66084211	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	273110	66084211	68922305	1556	33206											
RIN1	9610	broad.mit.edu	37	chr11	66101539	66101539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcaggctcaggtgggacCcgaaggctccggggccctgg	19	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66101539	A	A	66101539	3	1	15	1	0	0	0	0	1	0	0	0	13482	623	22	2	925	2	RIN1	11	66101539	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	17328	66101539	68904977	1557	33207											
MRPL11	65003	broad.mit.edu	37	chr11	66204240	66204240	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcatgaacctgacacagctCaaaagtccttcgcactggtc	8	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66204240	G	G	66204240	1	3	15	0	1	0	0	0	0	0	0	0	9870	841	29	4		4	MRPL11	11	66204240	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	102701	66204240	68802276	1558	33208											
PELI3	246330	broad.mit.edu	37	chr11	66235585	66235585	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctacaaagctcttttctctCccactctgcccagaatggtg	6	15	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66235585	G	G	66235585	1	3	15	0	1	0	0	0	0	0	0	0	11817	870	30	4		4	PELI3	11	66235585	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	31345	66235585	68770931	1559	33209											
CTSF	8722	broad.mit.edu	37	chr11	66335115	66335115	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcttccgagctcatccaGgacttggaagctgcagagct	12	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66335115	C	C	66335115	3	2	15	1	0	0	0	0	1	0	0	0	4068	991	35	4	1167	4	CTSF	11	66335115	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	99530	66335115	68671401	1560	33210											
PC	5091	broad.mit.edu	37	chr11	66638672	66638672	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggacaacgggaacacctgTtgggagaaaggtgtggggga	19	5	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66638672	A	A	66638672	1	1	15	0	1	0	0	0	0	0	0	0	11591	1740	60	5		5	PC	11	66638672	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	303557	66638672	68367844	1561	33211											
ADRBK1	156	broad.mit.edu	37	chr11	67051310	67051310	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgagctaatgcccatgaccCctgttctgctgcagtaccct	8	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67051310	G	G	67051310	1	3	15	0	1	0	0	0	0	0	0	0	343	638	22	4		4	ADRBK1	11	67051310	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	412638	67051310	67955206	1562	33212											
SSH3	54961	broad.mit.edu	37	chr11	67077689	67077689	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggaagagagccaggcagCcccgaaagaagagcctgggc	15	11	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67077689	T	T	67077689	3	4	15	1	0	0	0	0	1	0	0	0	15304	739	26	4	1612	4	SSH3	11	67077689	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	26379	67077689	67928827	1563	33213											
LRP5	4041	broad.mit.edu	37	chr11	68216547	68216547	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcatcctgacctcggccGggccactctggcttctctgt	10	16	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68216547	T	T	68216547	1	4	15	0	1	0	0	0	0	0	0	0	9047	1131	39	1		1	LRP5	11	68216547	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	1138858	68216547	66789969	1564	33214											
CTTN	2017	broad.mit.edu	37	chr11	70281044	70281044	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatctctgagcaggctgcCtgggagcttgctctgggttg	16	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70281044	T	T	70281044	1	4	15	0	1	0	0	0	0	0	0	0	4078	696	24	4		4	CTTN	11	70281044	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2064497	70281044	64725472	1565	33215											
PDE2A	5138	broad.mit.edu	37	chr11	72290403	72290403	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccaagatgatgtcccgcaTcagatccagcatgcgctgat	11	12	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72290403	A	A	72290403	3	1	15	1	0	0	0	0	1	0	0	0	11730	1435	50	5	564	5	PDE2A	11	72290403	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	2009359	72290403	62716113	1566	33216											
CHCHD8	51287	broad.mit.edu	37	chr11	73584501	73584501	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggttcctaaattataaataGcactgaccagactgcaccat	6	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73584501	A	A	73584501	1	1	15	0	1	0	0	0	0	0	0	0	3353	986	34	4		4	CHCHD8	11	73584501	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1294098	73584501	61422015	1567	33217											
GDPD4	220032	broad.mit.edu	37	chr11	76928510	76928510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctctacctcaggctttGtgcaaactttattatggccc	6	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76928510	T	T	76928510	1	4	15	0	1	0	0	0	0	0	0	0	6390	1392	48	3		3	GDPD4	11	76928510	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3344009	76928510	58078006	1568	33218											
GDPD4	220032	broad.mit.edu	37	chr11	76982463	76982463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacagaaaaaaaatctcCtgacttcaagcactaggctt	7	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76982463	A	A	76982463	1	1	15	0	1	0	0	0	0	0	0	0	6390	696	24	2		2	GDPD4	11	76982463	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	53953	76982463	58024053	1569	33219											
NARS2	79731	broad.mit.edu	37	chr11	78152060	78152061	+	Intron	DNP	GG	AA	AA													actctttcatggggtcttggGgatacaagtaaaaacgcttc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	78152061	AA	AA	78152060	1	1	15	0	1	0	0	0	0	0	0	0	10265	1247	43	4		4	NARS2	11	78152060	Intron	DNP	GG	TCGA-05-4410-01A-21D-1855-08	1169597	78152060	56854456	1570	33220											
C11orf82	220042	broad.mit.edu	37	chr11	82643033	82643033	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgatctcagcagcatatAtacttctgacagcacttctg	7	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82643033	G	G	82643033	3	3	15	1	0	0	0	0	1	0	0	0	1677	449	16	5	667	5	C11orf82	11	82643033	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	4490973	82643033	52363483	1571	33221											
DLG2	1740	broad.mit.edu	37	chr11	83641482	83641482	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgcctgggagaagcaggcTtatcacatagtttgttcaca	11	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83641482	A	A	83641482	3	1	15	1	0	0	0	0	1	0	0	0	4595	1609	56	5	1648	5	DLG2	11	83641482	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	998449	83641482	51365034	1572	33222											
DLG2	1740	broad.mit.edu	37	chr11	84245776	84245776	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcttgatatcgatacttcTaggagaaaagaaaagaaagg	9	5	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84245776	C	C	84245776	5	2	15	1	0	0	0	0	0	0	1	0	4595	1536	53	5	2818	5	DLG2	11	84245776	Splice_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	604294	84245776	50760740	1573	33223											
EED	8726	broad.mit.edu	37	chr11	85963272	85963272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attagtgtttgcaactgtagGaagcaacagagtgagtgtta	12	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85963272	T	T	85963272	3	4	15	1	0	0	0	0	1	0	0	0	4962	1174	41	3	360	3	EED	11	85963272	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1717496	85963272	49043244	1574	33224											
EED	8726	broad.mit.edu	37	chr11	85979601	85979601	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggcgatttgatactttctAaggtatggtaactgcagtta	10	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85979601	G	G	85979601	3	3	15	1	0	0	0	0	1	0	0	0	4962	363	13	5	998	5	EED	11	85979601	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	16329	85979601	49026915	1575	33225											
PRSS23	11098	broad.mit.edu	37	chr11	86519409	86519409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcaatgccaatgacatcGgcatggattatgattatgcc	11	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86519409	T	T	86519409	3	4	15	1	0	0	0	0	1	0	0	0	12726	1116	39	1	726	1	PRSS23	11	86519409	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	539808	86519409	48487107	1576	33226											
TYR	7299	broad.mit.edu	37	chr11	89018021	89018021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacccattggacataaccGggaatcctacatggttcctt	8	12	0	0	rs61754393		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89018021	T	T	89018021	3	4	15	1	0	0	0	0	1	0	0	0	16939	1116	39	1	1279	1	TYR	11	89018021	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2498612	89018021	45988495	1577	33227											
FOLH1B	219595	broad.mit.edu	37	chr11	89420530	89420530	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtagctgaaaagccctgatGaaggctttgaaggcaaatct	11	7	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89420530	A	A	89420530	3	1	15	1	0	0	0	0	1	0	0	0	6038	1291	45	4	558	4	FOLH1B	11	89420530	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	402509	89420530	45585986	1578	33228											
NAALAD2	10003	broad.mit.edu	37	chr11	89916046	89916046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttgaagcatgattctgCggtttgcgttataattatgt	9	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89916046	A	A	89916046	1	1	15	0	1	0	0	0	0	0	0	0	10222	783	27	3		3	NAALAD2	11	89916046	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	495516	89916046	45090470	1579	33229											
FAT3	120114	broad.mit.edu	37	chr11	92534273	92534273	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcctgtctatatccacgtCttgccccctgaaacgttctt	5	14	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92534273	A	A	92534273	2	1	15	1	0	0	0	0	0	0	0	1	5748	900	32	3		3	FAT3	11	92534273	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2618227	92534273	42472243	1580	33230											
FAT3	120114	broad.mit.edu	37	chr11	92569684	92569684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctaagaatcaacctttGctgccttatgtcatgtcttt	6	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92569684	T	T	92569684	1	4	15	0	1	0	0	0	0	0	0	0	5748	1334	46	3		3	FAT3	11	92569684	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	35411	92569684	42436832	1581	33231											
HEPHL1	341208	broad.mit.edu	37	chr11	93839114	93839114	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttaaaaaatcagcttaTcttttaactaaccaaaggtt	3	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93839114	C	C	93839114	1	2	15	0	1	0	0	0	0	0	0	0	7122	1450	50	5		5	HEPHL1	11	93839114	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1269430	93839114	41167402	1582	33232											
GPR83	10888	broad.mit.edu	37	chr11	94134282	94134282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcggagaaggtgtagttgttCcaagagaagaagtgcgaggc	16	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94134282	A	A	94134282	3	1	15	1	0	0	0	0	1	0	0	0	6778	856	30	3	1155	3	GPR83	11	94134282	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	295168	94134282	40872234	1583	33233											
KDM4D	55693	broad.mit.edu	37	chr11	94731487	94731487	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgtggggaggcaagggtGaccttttccatggatgcctt	15	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731487	T	T	94731487	2	4	15	1	0	0	0	0	0	0	0	1	8201	1277	45	3		3	KDM4D	11	94731487	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	597205	94731487	40275029	1584	33234											
KDM4DL	390245	broad.mit.edu	37	chr11	94759373	94759373	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtgcccccagaacatggtCagcacctggaacgcctggcc	12	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94759373	G	G	94759373	3	3	15	1	0	0	0	0	1	0	0	0	8202	827	29	4	654	4	KDM4DL	11	94759373	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	27886	94759373	40247143	1585	33235											
CNTN5	53942	broad.mit.edu	37	chr11	99931812	99931812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaagtgaaatatatcaaCcagcacatggtccttaattg	8	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99931812	A	A	99931812	1	1	15	0	1	0	0	0	0	0	0	0	3676	522	18	3		3	CNTN5	11	99931812	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5172439	99931812	35074704	1586	33236											
DYNC2H1	79659	broad.mit.edu	37	chr11	103039571	103039571	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagcagttaaaccaaattcAggttcatacaactgaagact	6	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103039571	T	T	103039571	3	4	15	1	0	0	0	0	1	0	0	0	4886	188	7	5	4976	5	DYNC2H1	11	103039571	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	3107759	103039571	31966945	1587	33237											
DYNC2H1	79659	broad.mit.edu	37	chr11	103182692	103182692	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaaaaagataatacacatcGagctcatgctctcttcagtc	5	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103182692	C	C	103182692	3	2	15	1	0	0	0	0	1	0	0	0	4886	1058	37	4	11918	4	DYNC2H1	11	103182692	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	143121	103182692	31823824	1588	33238											
DYNC2H1	79659	broad.mit.edu	37	chr11	103182715	103182715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgctctcttcagtcttGcatggtttcatgctgcatgt	8	11	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103182715	T	T	103182715	3	4	15	1	0	0	0	0	1	0	0	0	4886	1319	46	3	11941	3	DYNC2H1	11	103182715	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	23	103182715	31823801	1589	33239											
DYNC2H1	79659	broad.mit.edu	37	chr11	103270477	103270477	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcattcttgaacaattTaatgctattcgtttagtaca	4	7	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103270477	G	G	103270477	3	3	15	1	0	0	0	0	1	0	0	0	4886	1751	61	5	12602	5	DYNC2H1	11	103270477	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	87762	103270477	31736039	1590	33240											
PDGFD	80310	broad.mit.edu	37	chr11	103780531	103780531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctcttgatgtggccaGgctcaaactgtaatacctag	8	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103780531	T	T	103780531	3	4	15	1	0	0	0	0	1	0	0	0	11754	1000	35	2	112	2	PDGFD	11	103780531	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	510054	103780531	31225985	1591	33241											
GUCY1A2	2977	broad.mit.edu	37	chr11	106698006	106698006	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggttcttttatatgcaatTttagcctctgatttttcagc	6	8	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106698006	G	G	106698006	1	3	15	0	1	0	0	0	0	0	0	0	6958	1856	64	5		5	GUCY1A2	11	106698006	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	2917475	106698006	28308510	1592	33242											
CWF19L2	143884	broad.mit.edu	37	chr11	107224348	107224348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagactccgatgctcagCaatagcttttttcctttggt	8	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107224348	A	A	107224348	3	1	15	1	0	0	0	0	1	0	0	0	4105	710	25	3	721	3	CWF19L2	11	107224348	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	526342	107224348	27782168	1593	33243											
CWF19L2	143884	broad.mit.edu	37	chr11	107299594	107299594	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catctctcaagacttcatctTgtgatttttctcttgggtct	6	10	6	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107299594	A	A	107299594	3	1	15	1	0	0	0	0	1	0	0	0	4105	1812	63	5	1364	5	CWF19L2	11	107299594	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	75246	107299594	27706922	1594	33244											
BCO2	83875	broad.mit.edu	37	chr11	112053813	112053813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagataactgtgatctgtgtGggtgtgatcttcaagaagcc	12	6	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112053813	T	T	112053813	1	4	15	0	1	0	0	0	0	0	0	0	1390	1363	47	2		2	BCO2	11	112053813	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4754219	112053813	22952703	1595	33245											
BCO2	83875	broad.mit.edu	37	chr11	112084521	112084521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtttgaatgcccctgaGggagacaacctgagtccatt	11	10	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112084521	T	T	112084521	3	4	15	1	0	0	0	0	1	0	0	0	1390	991	35	2	1303	2	BCO2	11	112084521	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	30708	112084521	22921995	1596	33246											
TTC12	54970	broad.mit.edu	37	chr11	113195353	113195353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttggcatctgtggagaagGatgcaaaggaacgagccaag	14	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113195353	T	T	113195353	3	4	15	1	0	0	0	0	1	0	0	0	16805	1174	41	3	285	3	TTC12	11	113195353	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1110832	113195353	21811163	1597	33247											
DRD2	1813	broad.mit.edu	37	chr11	113281704	113281704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcacggctgggaacaccCacacccagtgcgccctggct	13	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113281704	A	A	113281704	1	1	15	0	1	0	0	0	0	0	0	0	4797	609	21	2		2	DRD2	11	113281704	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	86351	113281704	21724812	1598	33248											
DRD2	1813	broad.mit.edu	37	chr11	113288937	113288937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcctggtactcctggagCcgatgaggccacagactcag	13	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113288937	A	A	113288937	1	1	15	0	1	0	0	0	0	0	0	0	4797	754	26	3		3	DRD2	11	113288937	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7233	113288937	21717579	1599	33249											
ZW10	9183	broad.mit.edu	37	chr11	113608401	113608401	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatcctgccacacaattcCaagtctctttagttggtgca	7	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113608401	A	A	113608401	4	1	15	1	0	0	0	0	0	1	0	0	18376	603	21	2	442	2	ZW10	11	113608401	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	319464	113608401	21398115	1600	33250											
USP28	57646	broad.mit.edu	37	chr11	113725190	113725190	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggagtgcagtggccggatCtcggctcactgcaacctccg	13	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113725190	G	G	113725190	1	3	15	0	1	0	0	0	0	0	0	0	17185	928	32	4		4	USP28	11	113725190	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	116789	113725190	21281326	1601	33251											
HTR3B	9177	broad.mit.edu	37	chr11	113803681	113803681	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagacgtagacctggcctttCtgaggagcccagaagacatt	11	10	1	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113803681	T	T	113803681	2	4	15	1	0	0	0	0	0	0	0	1	7515	912	32	4		4	HTR3B	11	113803681	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	78491	113803681	21202835	1602	33252											
HTR3A	3359	broad.mit.edu	37	chr11	113849821	113849821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctatctactttcccgacCccggcccctgctcttcactt	5	18	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113849821	A	A	113849821	1	1	15	0	1	0	0	0	0	0	0	0	7514	638	22	2		2	HTR3A	11	113849821	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	46140	113849821	21156695	1603	33253											
HTR3A	3359	broad.mit.edu	37	chr11	113850014	113850014	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcaggtgagcagacccgcCcctccctgcccccgttaccc	10	21	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113850014	A	A	113850014	1	1	15	0	1	0	0	0	0	0	0	0	7514	638	22	2		2	HTR3A	11	113850014	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	193	113850014	21156502	1604	33254											
REXO2	25996	broad.mit.edu	37	chr11	114315245	114315245	+	Intron	DEL	G	-	-													tgtgtttttggtggggggctGgggattctctcttgcagtct							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114315245	-	-	114315245	6	5	15	0	1	1	0	1	0	0	0	0	13350	1363	47	0		0	REXO2	11	114315245	Intron	DEL	G	TCGA-05-4410-01A-21D-1855-08	465231	114315245	20691271	1605	33255											
APOC3	345	broad.mit.edu	37	chr11	116701533	116701533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttctcagcttcatgcagGgttacatgaagcacgccacc	8	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116701533	T	T	116701533	3	4	15	1	0	0	0	0	1	0	0	0	801	1232	43	2	106	2	APOC3	11	116701533	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2386288	116701533	18304983	1606	33256											
APOC3	345	broad.mit.edu	37	chr11	116701620	116701620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcaggccaggtacaccCgctggcctccctccccatcc	8	22	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116701620	A	A	116701620	1	1	15	0	1	0	0	0	0	0	0	0	801	667	23	1		1	APOC3	11	116701620	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	87	116701620	18304896	1607	33257											
SIDT2	51092	broad.mit.edu	37	chr11	117058097	117058097	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgacttctcattgcaggtcAccctcgagtcctggctgatt	9	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117058097	T	T	117058097	3	4	15	1	0	0	0	0	1	0	0	0	14416	159	6	5	1061	5	SIDT2	11	117058097	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	356477	117058097	17948419	1608	33258											
SIDT2	51092	broad.mit.edu	37	chr11	117058278	117058278	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcccccacaccctctgCagatgctcagagcccctttc	6	20	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117058278	T	T	117058278	1	4	15	0	1	0	0	0	0	0	0	0	14416	725	25	4		4	SIDT2	11	117058278	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	181	117058278	17948238	1609	33259											
DSCAML1	57453	broad.mit.edu	37	chr11	117403064	117403064	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcccttcccagcctgccCcgttctccccaggccctctc	5	24	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117403064	G	G	117403064	1	3	15	0	1	0	0	0	0	0	0	0	4809	638	22	4		4	DSCAML1	11	117403064	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	344786	117403064	17603452	1610	33260											
TMPRSS4	56649	broad.mit.edu	37	chr11	117979646	117979646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgagggtttggggcctGggccagcaatgagcagggag	18	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117979646	T	T	117979646	1	4	15	0	1	0	0	0	0	0	0	0	16372	1363	47	2		2	TMPRSS4	11	117979646	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	576582	117979646	17026870	1611	33261											
UBE4A	9354	broad.mit.edu	37	chr11	118257070	118257070	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcccagcttagttgactgGattttgaataggacctctta	8	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118257070	T	T	118257070	1	4	15	0	1	0	0	0	0	0	0	0	17008	1189	41	3		3	UBE4A	11	118257070	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	277424	118257070	16749446	1612	33262											
TMEM25	84866	broad.mit.edu	37	chr11	118404498	118404498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccttgcctgagggtcctGggtctgaaagggtaggacag	15	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118404498	T	T	118404498	1	4	15	0	1	0	0	0	0	0	0	0	16273	1363	47	2		2	TMEM25	11	118404498	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	147428	118404498	16602018	1613	33263											
CBL	867	broad.mit.edu	37	chr11	119103472	119103472	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatgggtaacacatagaAgtagttgagttggttttaat	11	3	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119103472	G	G	119103472	1	3	15	0	1	0	0	0	0	0	0	0	2726	87	3	5		5	CBL	11	119103472	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	698974	119103472	15903044	1614	33264											
TRIM29	23650	broad.mit.edu	37	chr11	119998125	119998125	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcaccttggctctctcAtccagagcatccatgatcac	7	15	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119998125	C	C	119998125	3	2	15	1	0	0	0	0	1	0	0	0	16627	214	8	5	741	5	TRIM29	11	119998125	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	894653	119998125	15008391	1615	33265											
SORL1	6653	broad.mit.edu	37	chr11	121495847	121495847	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatatcacagcttaccttggGaatactactgacaatttctt	5	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121495847	T	T	121495847	2	4	15	1	0	0	0	0	0	0	0	1	15048	1161	41	3		3	SORL1	11	121495847	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1497722	121495847	13510669	1616	33266											
OR10G8	219869	broad.mit.edu	37	chr11	123900553	123900553	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtggttctccactgtcaCggtgcccaaattgctgatga	10	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123900553	T	T	123900553	3	4	15	1	0	0	0	0	1	0	0	0	10997	536	19	4	226	4	OR10G8	11	123900553	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2404706	123900553	11105963	1617	33267											
OR10G8	219869	broad.mit.edu	37	chr11	123901089	123901089	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctttgcttctttggccctGgtcttttcatttacctgagg	8	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123901089	C	C	123901089	3	2	15	1	0	0	0	0	1	0	0	0	10997	1348	47	4	762	4	OR10G8	11	123901089	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	536	123901089	11105427	1618	33268											
OR8B3	390271	broad.mit.edu	37	chr11	124266395	124266395	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaactgtagatgagaggatTgagcatgggcaccacattag	12	7	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124266395	A	A	124266395	3	1	15	1	0	0	0	0	1	0	0	0	11322	1812	63	5	90	5	OR8B3	11	124266395	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	365306	124266395	10740121	1619	33269											
OR8B8	26493	broad.mit.edu	37	chr11	124310761	124310761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttgggagtgataacactgGaatagcagaaatctatgaag	11	4	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124310761	T	T	124310761	3	4	15	1	0	0	0	0	1	0	0	0	11324	1174	41	3	717	3	OR8B8	11	124310761	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	44366	124310761	10695755	1620	33270											
ROBO3	64221	broad.mit.edu	37	chr11	124742353	124742353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggccaacttaacatcaCcgcggtgcagcgtggggatg	14	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124742353	A	A	124742353	3	1	15	1	0	0	0	0	1	0	0	0	13626	507	18	3	1265	3	ROBO3	11	124742353	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	431592	124742353	10264163	1621	33271											
ROBO4	54538	broad.mit.edu	37	chr11	124765294	124765294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaacagtccaggggccCccaaataagaaggagccaga	12	11	0	3	rs76547251	byFrequency;by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124765294	A	A	124765294	1	1	15	0	1	0	0	0	0	0	0	0	13627	638	22	2		2	ROBO4	11	124765294	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	22941	124765294	10241222	1622	33272											
CCDC15	80071	broad.mit.edu	37	chr11	124857934	124857934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattctacccatatgtcaGgaccgggattttctacccag	7	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124857934	T	T	124857934	3	4	15	1	0	0	0	0	1	0	0	0	2810	991	35	2	1838	2	CCDC15	11	124857934	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	92640	124857934	10148582	1623	33273											
CDON	50937	broad.mit.edu	37	chr11	125864222	125864222	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcactgtcattgtcactatcTgttggtcggtaatagatata	8	7	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125864222	A	A	125864222	2	1	15	1	0	0	0	0	0	0	0	1	3200	1567	55	5		5	CDON	11	125864222	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	1006288	125864222	9142294	1624	33274											
CDON	50937	broad.mit.edu	37	chr11	125889439	125889439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacagttcgtccctagcaCacagagcttagaagtagctt	8	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125889439	A	A	125889439	1	1	15	0	1	0	0	0	0	0	0	0	3200	493	17	3		3	CDON	11	125889439	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	25217	125889439	9117077	1625	33275											
RPUSD4	84881	broad.mit.edu	37	chr11	126081500	126081500	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggccgtttccccggatccAggggcccgacgcgctccacc	12	18	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126081500	T	T	126081500	3	4	15	1	0	0	0	0	1	0	0	0	13780	188	7	5	1127	5	RPUSD4	11	126081500	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	192061	126081500	8925016	1626	33276											
FAM118B	79607	broad.mit.edu	37	chr11	126110847	126110847	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccattgattttgatcttttaGaagatgaggagagcaaaaag	10	4	1	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126110847	A	A	126110847	3	1	15	1	0	0	0	0	1	0	0	0	5458	943	33	4	253	4	FAM118B	11	126110847	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	29347	126110847	8895669	1627	33277											
FOXRED1	55572	broad.mit.edu	37	chr11	126139201	126139201	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctgggtaaagttgaggacGacagagggtattgtggttct	15	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126139201	A	A	126139201	1	1	15	0	1	0	0	0	0	0	0	0	6093	1073	37	4		4	FOXRED1	11	126139201	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	28354	126139201	8867315	1628	33278											
PRDM10	56980	broad.mit.edu	37	chr11	129804796	129804796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcccattgctgggtattGgttatgctggaaaagatgga	12	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129804796	T	T	129804796	1	4	15	0	1	0	0	0	0	0	0	0	12557	1363	47	2		2	PRDM10	11	129804796	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3665595	129804796	5201720	1629	33279											
ZBTB44	29068	broad.mit.edu	37	chr11	130166397	130166397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgtacggatgtggtggCaagaggactggacattcctc	14	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130166397	A	A	130166397	1	1	15	0	1	0	0	0	0	0	0	0	17671	725	25	3		3	ZBTB44	11	130166397	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	361601	130166397	4840119	1630	33280											
NTM	50863	broad.mit.edu	37	chr11	132016316	132016316	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtacagcatcgagatccAgaacgtggatgtgtatgacg	13	8	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132016316	G	G	132016316	3	3	15	1	0	0	0	0	1	0	0	0	10794	188	7	5	400	5	NTM	11	132016316	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1849919	132016316	2990200	1631	33281											
SPATA19	219938	broad.mit.edu	37	chr11	133714354	133714354	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acggtgcacctcccacctctCccctctccctcaccgctact	4	23	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133714354	T	T	133714354	1	4	15	0	1	0	0	0	0	0	0	0	15120	870	30	4		4	SPATA19	11	133714354	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1698038	133714354	1292162	1632	33282											
NCAPD3	23310	broad.mit.edu	37	chr11	134073739	134073739	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggagagggtgttatccacCtctctttcaggcagttctaa	10	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134073739	T	T	134073739	2	4	15	1	0	0	0	0	0	0	0	1	10301	680	24	4		4	NCAPD3	11	134073739	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	359385	134073739	932777	1633	33283											
GLB1L2	89944	broad.mit.edu	37	chr11	134244849	134244849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcagctgccctcccagccGggccctctctccacaggtca	9	20	3	0	rs113408550		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134244849	T	T	134244849	1	4	15	0	1	0	0	0	0	0	0	0	6493	1131	39	1		1	GLB1L2	11	134244849	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	171110	134244849	761667	1634	33284											
DYRK4	8798	broad.mit.edu	37	chr12	4711896	4711896	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgactcttcaatgtcttGtaaattcagaagttcaaatt	5	9	5	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4711896	C	C	4711896	1	2	15	0	1	0	0	0	0	0	0	0	4898	1392	48	4		4	DYRK4	12	4711896	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08		4711896	129139999	1635	33285											
KCNA6	3742	broad.mit.edu	37	chr12	4919230	4919230	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatcggagaaatcccttaCgctggcggcgccgggggagg	18	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4919230	T	T	4919230	3	4	15	1	0	0	0	0	1	0	0	0	8077	536	19	4	25	4	KCNA6	12	4919230	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	207334	4919230	128932665	1636	33286											
NTF3	4908	broad.mit.edu	37	chr12	5603685	5603685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagacgctacaactcacCgcgggtcctgctgagcgaca	11	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603685	A	A	5603685	3	1	15	1	0	0	0	0	1	0	0	0	10791	652	23	1	350	1	NTF3	12	5603685	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	684455	5603685	128248210	1637	33287											
VWF	7450	broad.mit.edu	37	chr12	6126086	6126086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgccagcagggacaatGgccaccaggcctacaacctg	12	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6126086	T	T	6126086	1	4	15	0	1	0	0	0	0	0	0	0	17373	1363	47	2		2	VWF	12	6126086	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	522401	6126086	127725809	1638	33288											
LTBR	4055	broad.mit.edu	37	chr12	6497951	6497951	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggggagcctacacccatttCattctccattgcaggatcgc	9	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6497951	T	T	6497951	1	4	15	0	1	0	0	0	0	0	0	0	9164	841	29	4		4	LTBR	12	6497951	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	371865	6497951	127353944	1639	33289											
NOP2	4839	broad.mit.edu	37	chr12	6669388	6669388	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggggtggaagcgcctttcTcgaaagcgggtaaaaccttc	13	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6669388	A	A	6669388	2	1	15	1	0	0	0	0	0	0	0	1	10633	1538	54	5		5	NOP2	12	6669388	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	171437	6669388	127182507	1640	33290											
A2ML1	144568	broad.mit.edu	37	chr12	9005036	9005036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgctttgcttcctcctcCattttccactatttttctcc	2	15	2	0	rs138983779	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9005036	A	A	9005036	1	1	15	0	1	0	0	0	0	0	0	0	5	609	21	2		2	A2ML1	12	9005036	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2335648	9005036	124846859	1641	33291											
A2M	2	broad.mit.edu	37	chr12	9256930	9256930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattggagtaatagtttgCttcatttcctctgatgaata	8	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9256930	A	A	9256930	3	1	15	1	0	0	0	0	1	0	0	0	4	797	28	3	3357	3	A2M	12	9256930	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	251894	9256930	124594965	1642	33292											
PRB4	5545	broad.mit.edu	37	chr12	11244935	11244935	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaagggagccactgaccTtcacggtgagtgttgctgct	12	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11244935	A	A	11244935	1	1	15	0	1	0	0	0	0	0	0	0	12551	1624	56	5		5	PRB4	12	11244935	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1988005	11244935	122606960	1643	33293											
PLEKHA5	54477	broad.mit.edu	37	chr12	19512243	19512244	+	Intron	DNP	GG	TT	TT													aggaaaacttcttcatgagtGgagatccagctttgttctat							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	19512244	TT	TT	19512243	1	4	15	0	1	0	0	0	0	0	0	0	12154	1363	47	2		2	PLEKHA5	12	19512243	Intron	DNP	GG	TCGA-05-4410-01A-21D-1855-08	8267308	19512243	114339652	1644	33294											
PDE3A	5139	broad.mit.edu	37	chr12	20705460	20705460	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagggaggaggaggagcagCaggaggggggcttcgcgtcc	22	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20705460	G	G	20705460	1	3	15	0	1	0	0	0	0	0	0	0	11731	725	25	4		4	PDE3A	12	20705460	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1193217	20705460	113146435	1645	33295											
SLCO1B1	10599	broad.mit.edu	37	chr12	21377550	21377550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaataataaacgaatcctcCaaatttttgaacttttattt	2	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21377550	A	A	21377550	1	1	15	0	1	0	0	0	0	0	0	0	14837	609	21	2		2	SLCO1B1	12	21377550	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	672090	21377550	112474345	1646	33296											
GOLT1B	51026	broad.mit.edu	37	chr12	21654939	21654939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacccatcgcccggctgGgtctcgcccctccgccgggg	13	20	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21654939	T	T	21654939	1	4	15	0	1	0	0	0	0	0	0	0	6635	1247	43	2		2	GOLT1B	12	21654939	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	277389	21654939	112196956	1647	33297											
ABCC9	10060	broad.mit.edu	37	chr12	21971084	21971084	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttttatccatacctacCgtaagtgcatacagaagacc	5	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21971084	A	A	21971084	2	1	15	1	0	0	0	0	0	0	0	1	59	666	23	1		1	ABCC9	12	21971084	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	316145	21971084	111880811	1648	33298											
ABCC9	10060	broad.mit.edu	37	chr12	22012543	22012543	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagacaatgttggtgttttGatacagcgctcgtgccacac	10	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22012543	A	A	22012543	4	1	15	1	0	0	0	0	0	1	0	0	59	1299	45	4	2385	4	ABCC9	12	22012543	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	41459	22012543	111839352	1649	33299											
SOX5	6660	broad.mit.edu	37	chr12	23818322	23818322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggaatattaaattgcCtaatttaaagctttgccctc	7	8	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23818322	A	A	23818322	1	1	15	0	1	0	0	0	0	0	0	0	15068	696	24	2		2	SOX5	12	23818322	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1805779	23818322	110033573	1650	33300											
TM7SF3	51768	broad.mit.edu	37	chr12	27129254	27129254	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcaagagaaagtgaccCagaatacaccatcatcatga	7	10	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27129254	G	G	27129254	3	3	15	1	0	0	0	0	1	0	0	0	16098	595	21	4	498	4	TM7SF3	12	27129254	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3310932	27129254	106722641	1651	33301											
OVCH1	341350	broad.mit.edu	37	chr12	29604465	29604465	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccgtggtgtgggaaaaaaGcctctaggcttttctagctc	11	9	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29604465	A	A	29604465	2	1	15	1	0	0	0	0	0	0	0	1	11417	958	34	4		4	OVCH1	12	29604465	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2475211	29604465	104247430	1652	33302											
BICD1	636	broad.mit.edu	37	chr12	32491768	32491768	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgtcccaggacttcaggGgcttcctacctacagaattt	9	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32491768	T	T	32491768	2	4	15	1	0	0	0	0	0	0	0	1	1434	1219	43	2		2	BICD1	12	32491768	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2887303	32491768	101360127	1653	33303											
SLC2A13	114134	broad.mit.edu	37	chr12	40153759	40153759	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagattagaagcagggcagTgaagtcaccaattgctgttc	11	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40153759	A	A	40153759	1	1	15	0	1	0	0	0	0	0	0	0	14656	1711	59	5		5	SLC2A13	12	40153759	3'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	7661991	40153759	93698136	1654	33304											
TMEM117	84216	broad.mit.edu	37	chr12	44374540	44374540	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actctggccaagcaacagatGaaagaagtactcagacacag	9	10	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44374540	T	T	44374540	1	4	15	0	1	0	0	0	0	0	0	0	16154	1305	45	3		3	TMEM117	12	44374540	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4220781	44374540	89477355	1655	33305											
ANO6	196527	broad.mit.edu	37	chr12	45771747	45771747	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctttgaaaagaacttcaAgactgtagaatagacaaagc	7	8	1	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45771747	G	G	45771747	1	3	15	0	1	0	0	0	0	0	0	0	701	87	3	5		5	ANO6	12	45771747	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1397207	45771747	88080148	1656	33306											
COL2A1	1280	broad.mit.edu	37	chr12	48389270	48389270	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagatagcacaggctggggtGacccggaaagggggctgtta	17	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48389270	A	A	48389270	1	1	15	0	1	0	0	0	0	0	0	0	3719	1305	45	4		4	COL2A1	12	48389270	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2617523	48389270	85462625	1657	33307											
TMBIM6	7009	broad.mit.edu	37	chr12	50152023	50152023	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctaggagttggcctgggCcctgccctggagttttgtat	13	9	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50152023	T	T	50152023	2	4	15	1	0	0	0	0	0	0	0	1	16106	726	26	4		4	TMBIM6	12	50152023	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1762753	50152023	83699872	1658	33308											
ACCN2	41	broad.mit.edu	37	chr12	50453796	50453796	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaggaggaggaggagacAaggagcaggctgggcctctc	18	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50453796	T	T	50453796	1	4	15	0	1	0	0	0	0	0	0	0	129	145	5	5		5	ACCN2	12	50453796	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	301773	50453796	83398099	1659	33309											
DIP2B	57609	broad.mit.edu	37	chr12	51100372	51100372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcttactgatggttagtGgtcgaagacataatgctgat	12	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51100372	T	T	51100372	3	4	15	1	0	0	0	0	1	0	0	0	4568	1348	47	2	2540	2	DIP2B	12	51100372	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	646576	51100372	82751523	1660	33310											
BIN2	51411	broad.mit.edu	37	chr12	51717914	51717914	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccctgggggccgccgccCtggccccgcgccctgtggtt	14	19	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51717914	A	A	51717914	1	1	15	1	0	0	0	0	0	0	0	0	1439	696	24	2		2	BIN2	12	51717914	Translation_Start_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	617542	51717914	82133981	1661	33311											
ANKRD33	341405	broad.mit.edu	37	chr12	52281843	52281843	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagctgcccggctcaggcCccgcccacccggaggatctt	13	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52281843	A	A	52281843	1	1	15	0	1	0	0	0	0	0	0	0	661	638	22	2		2	ANKRD33	12	52281843	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	563929	52281843	81570052	1662	33312											
ACVR1B	91	broad.mit.edu	37	chr12	52369262	52369262	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctacactgactactgcaAcaggatcgacttgagggtgc	11	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52369262	G	G	52369262	3	3	15	1	0	0	0	0	1	0	0	0	221	43	2	5	311	5	ACVR1B	12	52369262	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	87419	52369262	81482633	1663	33313											
KRT85	3891	broad.mit.edu	37	chr12	52758013	52758013	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaagaaaggtgcctttggtCagcatggtgaccctgcccct	11	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52758013	T	T	52758013	1	4	15	0	1	0	0	0	0	0	0	0	8570	841	29	4		4	KRT85	12	52758013	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	388751	52758013	81093882	1664	33314											
KRT82	3888	broad.mit.edu	37	chr12	52799789	52799789	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatggtgacaggggtgatGcaggcagaaggcccacaggt	17	7	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52799789	A	A	52799789	2	1	15	1	0	0	0	0	0	0	0	1	8567	1311	46	4		4	KRT82	12	52799789	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	41776	52799789	81052106	1665	33315											
KRT74	121391	broad.mit.edu	37	chr12	52964617	52964617	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtctggatctgagcgatctCctgcattgagagaggaagac	13	8	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52964617	G	G	52964617	3	3	15	1	0	0	0	0	1	0	0	0	8558	869	30	4	765	4	KRT74	12	52964617	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	164828	52964617	80887278	1666	33316											
KRT73	319101	broad.mit.edu	37	chr12	53001921	53001921	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaggaatttcctagaagAgtccggagcagtctgccagg	13	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53001921	G	G	53001921	1	3	15	0	1	0	0	0	0	0	0	0	8557	319	11	5		5	KRT73	12	53001921	3'UTR	SNP	A	TCGA-05-4410-01A-21D-1855-08	37304	53001921	80849974	1667	33317											
HOXC13	3229	broad.mit.edu	37	chr12	54333267	54333267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctacctggacgtgtcgGtggtgcccgggatcagcggg	18	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54333267	T	T	54333267	3	4	15	1	0	0	0	0	1	0	0	0	7379	1261	44	3	579	3	HOXC13	12	54333267	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1331346	54333267	79518628	1668	33318											
HOXC4	3221	broad.mit.edu	37	chr12	54428047	54428047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttcctggcttggggtgGggtttatgttccagagacgg	15	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54428047	T	T	54428047	1	4	15	0	1	0	0	0	0	0	0	0	7380	1247	43	2		2	HOXC4	12	54428047	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	94780	54428047	79423848	1669	33319											
GTSF1	121355	broad.mit.edu	37	chr12	54857220	54857220	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactataacaagtaaactcaGagtaaaaaactaagagggaa	7	5	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54857220	T	T	54857220	1	4	15	0	1	0	0	0	0	0	0	0	6951	957	33	3		3	GTSF1	12	54857220	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	429173	54857220	78994675	1670	33320											
ITGA7	3679	broad.mit.edu	37	chr12	56090819	56090819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacctggccccggagcctcCggtctgtgtccgcatctaac	11	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56090819	A	A	56090819	3	1	15	1	0	0	0	0	1	0	0	0	7951	652	23	1	1868	1	ITGA7	12	56090819	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1233599	56090819	77761076	1671	33321											
KIF5A	3798	broad.mit.edu	37	chr12	57970090	57970090	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagagtcaccgggaggcCcatcaccggcagctggcccg	15	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57970090	A	A	57970090	2	1	15	1	0	0	0	0	0	0	0	1	8375	610	22	2		2	KIF5A	12	57970090	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1879271	57970090	75881805	1672	33322											
AGAP2	116986	broad.mit.edu	37	chr12	58125463	58125463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagtttgaggatggatagAgggatacactgatgtgacga	14	4	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58125463	G	G	58125463	1	3	15	0	1	0	0	0	0	0	0	0	368	319	11	5		5	AGAP2	12	58125463	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	155373	58125463	75726432	1673	33323											
SLC16A7	9194	broad.mit.edu	37	chr12	60168526	60168526	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatggcaaatggattggcCatggcaggaagtcctgtttt	12	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60168526	T	T	60168526	2	4	15	1	0	0	0	0	0	0	0	1	14526	581	21	4		4	SLC16A7	12	60168526	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2043063	60168526	73683369	1674	33324											
MON2	23041	broad.mit.edu	37	chr12	62931366	62931366	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacaattattgaaaatgtatCctttttaaaatatagctgac	4	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62931366	G	G	62931366	1	3	15	0	1	0	0	0	0	0	0	0	9794	870	30	4		4	MON2	12	62931366	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2762840	62931366	70920529	1675	33325											
FRS2	10818	broad.mit.edu	37	chr12	69968531	69968531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattacatacaggttgacttGgaaggtggcagtgactctga	12	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69968531	T	T	69968531	3	4	15	1	0	0	0	0	1	0	0	0	6121	1339	47	2	1341	2	FRS2	12	69968531	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	7037165	69968531	63883364	1676	33326											
LRRC10	376132	broad.mit.edu	37	chr12	70004436	70004436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggctattgaggtggttGtcgctcaggtagagcttgac	16	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70004436	T	T	70004436	3	4	15	1	0	0	0	0	1	0	0	0	9054	1368	48	3	654	3	LRRC10	12	70004436	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	35905	70004436	63847459	1677	33327											
PTPRR	5801	broad.mit.edu	37	chr12	71094917	71094917	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaataaatagaaggctcacCatgaattcactttggagtaa	7	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71094917	T	T	71094917	3	4	15	1	0	0	0	0	1	0	0	0	12918	608	21	4	811	4	PTPRR	12	71094917	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1090481	71094917	62756978	1678	33328											
PPFIA2	8499	broad.mit.edu	37	chr12	81762455	81762455	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgtatataaaacaaaCatgagcattgcaaaatattc	6	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81762455	T	T	81762455	1	4	15	0	1	0	0	0	0	0	0	0	12406	493	17	4		4	PPFIA2	12	81762455	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	10667538	81762455	52089440	1679	33329											
PPFIA2	8499	broad.mit.edu	37	chr12	81768261	81768261	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgctggcataaatatgtatGacaagaaaaaaattgactta	7	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81768261	T	T	81768261	1	4	15	0	1	0	0	0	0	0	0	0	12406	1305	45	3		3	PPFIA2	12	81768261	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	5806	81768261	52083634	1680	33330											
C12orf26	84190	broad.mit.edu	37	chr12	82824732	82824732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaggaagagagatggtGctgtggtcgtaatgccagaa	14	4	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82824732	T	T	82824732	3	4	15	1	0	0	0	0	1	0	0	0	1692	1319	46	3	1362	3	C12orf26	12	82824732	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1056471	82824732	51027163	1681	33331											
LRRIQ1	84125	broad.mit.edu	37	chr12	85626515	85626515	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatccagatgtacttaatgGtggaagagttcagcttgtgg	13	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85626515	A	A	85626515	3	1	15	1	0	0	0	0	1	0	0	0	9116	1261	44	4	5099	4	LRRIQ1	12	85626515	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2801783	85626515	48225380	1682	33332											
UBE2N	7334	broad.mit.edu	37	chr12	93804897	93804897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataaattttggtcatgaaaCgtactttaggggctgccatt	10	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93804897	A	A	93804897	3	1	15	1	0	0	0	0	1	0	0	0	16992	536	19	3	261	3	UBE2N	12	93804897	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	8178382	93804897	40046998	1683	33333											
VEZT	55591	broad.mit.edu	37	chr12	95660204	95660205	+	Missense_Mutation	DNP	GG	TT	TT													ttggtggattgtgtcttcctGgctggtatggggagtgattc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	95660205	TT	TT	95660204	3	4	15	1	0	0	0	0	1	0	0	0	17283	1357	47	2	524	2	VEZT	12	95660204	Missense_Mutation	DNP	GG	TCGA-05-4410-01A-21D-1855-08	1855307	95660204	38191691	1684	33334											
IKBIP	121457	broad.mit.edu	37	chr12	99008138	99008138	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actataagaaaatataatatCacaatgattaaatgtattag	4	3	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99008138	A	A	99008138	1	1	15	0	1	0	0	0	0	0	0	0	7679	841	29	3		3	IKBIP	12	99008138	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3347934	99008138	34843757	1685	33335											
GAS2L3	283431	broad.mit.edu	37	chr12	101011608	101011608	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtattccacaatatttcaGaatttcaatgttataaacat	3	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101011608	T	T	101011608	1	4	15	0	1	0	0	0	0	0	0	0	6310	957	33	3		3	GAS2L3	12	101011608	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2003470	101011608	32840287	1686	33336											
ANO4	121601	broad.mit.edu	37	chr12	101462132	101462132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcagaaactgggagaaGgtaaagggtctttgaccaaa	13	5	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101462132	T	T	101462132	1	4	15	0	1	0	0	0	0	0	0	0	699	1015	35	2		2	ANO4	12	101462132	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	450524	101462132	32389763	1687	33337											
ANO4	121601	broad.mit.edu	37	chr12	101505439	101505439	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttatccctcgcttggtgTatgcttataagtatggacct	8	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101505439	A	A	101505439	3	1	15	1	0	0	0	0	1	0	0	0	699	1638	57	5	2382	5	ANO4	12	101505439	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	43307	101505439	32346456	1688	33338											
PAH	5053	broad.mit.edu	37	chr12	103249050	103249050	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggacttcagagtcttgaaCactgtgccccatgttttctt	8	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103249050	G	G	103249050	2	3	15	1	0	0	0	0	0	0	0	1	11488	465	17	4		4	PAH	12	103249050	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1743611	103249050	30602845	1689	33339											
C12orf42	374470	broad.mit.edu	37	chr12	103695875	103695875	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcactcgccgaacaattcCctcgcagcggtcaatgtaag	9	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103695875	A	A	103695875	1	1	15	0	1	0	0	0	0	0	0	0	1701	638	22	2		2	C12orf42	12	103695875	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	446825	103695875	30156020	1690	33340											
STAB2	55576	broad.mit.edu	37	chr12	104069754	104069754	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatggaactctgtgttctgaGatggacccttgcacaggact	12	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104069754	T	T	104069754	3	4	15	1	0	0	0	0	1	0	0	0	15356	933	33	3	2695	3	STAB2	12	104069754	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	373879	104069754	29782141	1691	33341											
STAB2	55576	broad.mit.edu	37	chr12	104105217	104105217	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtgagatttagtaagaGggctaagacagcaactggtt	13	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104105217	A	A	104105217	1	1	15	0	1	0	0	0	0	0	0	0	15356	1015	35	4		4	STAB2	12	104105217	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	35463	104105217	29746678	1692	33342											
BTBD11	121551	broad.mit.edu	37	chr12	107914417	107914417	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcatcgccgaattgagtaAgtagatgttggttctccagc	11	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107914417	T	T	107914417	1	4	15	0	1	0	0	0	0	0	0	0	1548	87	3	5		5	BTBD11	12	107914417	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	3809200	107914417	25937478	1693	33343											
CMKLR1	1240	broad.mit.edu	37	chr12	108686144	108686144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgggccacgaggaagacCcaggtgtggacaggctgaag	18	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108686144	A	A	108686144	3	1	15	1	0	0	0	0	1	0	0	0	3611	623	22	2	529	2	CMKLR1	12	108686144	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	771727	108686144	25165751	1694	33344											
SART3	9733	broad.mit.edu	37	chr12	108938916	108938916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaccacaggtactcaccCgagcagcttccacaatcgca	7	16	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108938916	A	A	108938916	3	1	15	1	0	0	0	0	1	0	0	0	13959	666	23	1	2227	1	SART3	12	108938916	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	252772	108938916	24912979	1695	33345											
SVOP	55530	broad.mit.edu	37	chr12	109316512	109316512	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaagtccatgtaatcctcCtcactcaggtactcgcaggc	8	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109316512	G	G	109316512	3	3	15	1	0	0	0	0	1	0	0	0	15541	680	24	4	556	4	SVOP	12	109316512	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	377596	109316512	24535383	1696	33346											
ANKRD13A	88455	broad.mit.edu	37	chr12	110471814	110471814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggaggtcttaccctctGggttagcctcagtgtttggc	14	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110471814	T	T	110471814	1	4	15	0	1	0	0	0	0	0	0	0	641	1363	47	2		2	ANKRD13A	12	110471814	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1155302	110471814	23380081	1697	33347											
CCDC63	160762	broad.mit.edu	37	chr12	111330915	111330915	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgatcccagcagaaattGtcccacgatgacaaccactc	7	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111330915	C	C	111330915	3	2	15	1	0	0	0	0	1	0	0	0	2862	1368	48	4	1140	4	CCDC63	12	111330915	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	859101	111330915	22520980	1698	33348											
RBM19	9904	broad.mit.edu	37	chr12	114374902	114374902	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtgctggagaagacgcCaactggagcccactccagat	13	12	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114374902	T	T	114374902	3	4	15	1	0	0	0	0	1	0	0	0	13229	594	21	4	940	4	RBM19	12	114374902	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3043987	114374902	19476993	1699	33349											
TBX5	6910	broad.mit.edu	37	chr12	114823367	114823367	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattctcaatctttaattgCgtgatctgaaggaaagagga	9	5	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114823367	A	A	114823367	2	1	15	1	0	0	0	0	0	0	0	1	15783	755	27	3		3	TBX5	12	114823367	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	448465	114823367	19028528	1700	33350											
NOS1	4842	broad.mit.edu	37	chr12	117681140	117681140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcggccacaaaggtgaggCggaacttgtttctcttccag	11	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117681140	T	T	117681140	3	4	15	1	0	0	0	0	1	0	0	0	10636	768	27	4	1424	4	NOS1	12	117681140	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2857773	117681140	16170755	1701	33351											
VSIG10	54621	broad.mit.edu	37	chr12	118519906	118519906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggttaaggggaagaagcGgggcagaggagtgctgctta	19	4	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118519906	T	T	118519906	1	4	15	0	1	0	0	0	0	0	0	0	17350	1131	39	1		1	VSIG10	12	118519906	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	838766	118519906	15331989	1702	33352											
TAOK3	51347	broad.mit.edu	37	chr12	118671561	118671561	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatagctaagatcacctcTggagccatcctaccaaacat	5	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118671561	C	C	118671561	2	2	15	1	0	0	0	0	0	0	0	1	15668	1567	55	5		5	TAOK3	12	118671561	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	151655	118671561	15180334	1703	33353											
CIT	11113	broad.mit.edu	37	chr12	120142047	120142047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaccccaggctaaaggcCcgcagggtagaaggaaccca	13	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120142047	A	A	120142047	1	1	15	0	1	0	0	0	0	0	0	0	3469	638	22	2		2	CIT	12	120142047	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1470486	120142047	13709848	1704	33354											
CIT	11113	broad.mit.edu	37	chr12	120198709	120198709	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatatttcaaaaaccctccTttgaacactggcttggcaac	6	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120198709	A	A	120198709	1	1	15	0	1	0	0	0	0	0	0	0	3469	1624	56	5		5	CIT	12	120198709	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	56662	120198709	13653186	1705	33355											
MSI1	4440	broad.mit.edu	37	chr12	120802651	120802651	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaggacctctctcctcCcaggacacaaaggtgacaga	8	16	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120802651	T	T	120802651	1	4	15	0	1	0	0	0	0	0	0	0	9969	638	22	4		4	MSI1	12	120802651	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	603942	120802651	13049244	1706	33356											
KNTC1	9735	broad.mit.edu	37	chr12	123054128	123054128	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcattattaaatcagtagGctactccttaaaatgacttc	4	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123054128	C	C	123054128	1	2	15	0	1	0	0	0	0	0	0	0	8499	1218	42	4		4	KNTC1	12	123054128	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2251477	123054128	10797767	1707	33357											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123661343	123661343	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttttgaaatcattctaattCaaaagcaataaagataaatt	4	4	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123661343	G	G	123661343	1	3	15	0	1	0	0	0	0	0	0	0	9822	841	29	4		4	MPHOSPH9	12	123661343	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	607215	123661343	10190552	1708	33358											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123679134	123679134	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggctgcactgaagcgTtctctcaaatcattctataa	7	11	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123679134	A	A	123679134	3	1	15	1	0	0	0	0	1	0	0	0	9822	1722	60	5	1559	5	MPHOSPH9	12	123679134	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	17791	123679134	10172761	1709	33359											
NCOR2	9612	broad.mit.edu	37	chr12	124824778	124824778	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagtggcatcagcaggGggaggcctcttgcggcccac	15	13	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124824778	A	A	124824778	1	1	15	0	1	0	0	0	0	0	0	0	10331	1247	43	4		4	NCOR2	12	124824778	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1145644	124824778	9027117	1710	33360											
NCOR2	9612	broad.mit.edu	37	chr12	124832360	124832360	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacgagggagcagggaaCagggcagtaccttgtgtgat	17	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124832360	T	T	124832360	1	4	15	0	1	0	0	0	0	0	0	0	10331	493	17	4		4	NCOR2	12	124832360	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7582	124832360	9019535	1711	33361											
SLC15A4	121260	broad.mit.edu	37	chr12	129294610	129294610	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgagacatcttacatgaatCaaacagactttgtttagaag	7	6	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129294610	G	G	129294610	3	3	15	1	0	0	0	0	1	0	0	0	14514	826	29	4	868	4	SLC15A4	12	129294610	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4462250	129294610	4557285	1712	33362											
GPR133	283383	broad.mit.edu	37	chr12	131605355	131605355	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtacgctggcaggtggaacGaggttgttgaagtaacggct	17	6	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131605355	A	A	131605355	1	1	15	0	1	0	0	0	0	0	0	0	6708	1073	37	4		4	GPR133	12	131605355	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2310745	131605355	2246540	1713	33363											
GPR133	283383	broad.mit.edu	37	chr12	131605422	131605422	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgttggcgagtggcgccatCtgggcctttgtagcccctgc	14	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131605422	T	T	131605422	2	4	15	1	0	0	0	0	0	0	0	1	6708	903	32	4		4	GPR133	12	131605422	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	67	131605422	2246473	1714	33364											
ZNF268	10795	broad.mit.edu	37	chr12	133768558	133768558	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagagctgtgtatggtGcaggcccaagttccaaatca	13	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133768558	T	T	133768558	2	4	15	1	0	0	0	0	0	0	0	1	17933	1319	46	3		3	ZNF268	12	133768558	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2163136	133768558	83337	1715	33365											
TUBA3C	7278	broad.mit.edu	37	chr13	19752452	19752452	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgtaatggcctctggcGtaattattggccgcatcttc	11	9	2	0	rs114178008		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19752452	T	T	19752452	4	4	15	1	0	0	0	0	0	1	0	0	16872	1140	40	3	1055	3	TUBA3C	13	19752452	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08		19752452	95417426	1716	33366											
TUBA3C	7278	broad.mit.edu	37	chr13	19753412	19753412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggattcaaaggagcccaCatggggccttaccgacgatg	14	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19753412	A	A	19753412	1	1	15	0	1	0	0	0	0	0	0	0	16872	493	17	3		3	TUBA3C	13	19753412	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	960	19753412	95416466	1717	33367											
SKA3	221150	broad.mit.edu	37	chr13	21742417	21742417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgtggactacgtggagaCttctcagaaatacaactgct	10	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21742417	A	A	21742417	3	1	15	1	0	0	0	0	1	0	0	0	14467	564	20	3	856	3	SKA3	13	21742417	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1989005	21742417	93427461	1718	33368											
SACS	26278	broad.mit.edu	37	chr13	23906719	23906719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttttgctctagtttttaCcatttcttcatccaacgtcg	5	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23906719	A	A	23906719	3	1	15	1	0	0	0	0	1	0	0	0	13915	507	18	3	2447	3	SACS	13	23906719	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2164302	23906719	91263159	1719	33369											
SACS	26278	broad.mit.edu	37	chr13	23939434	23939434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaaccaaaaaatatacCaaaaaatagtaattaataac	1	7	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23939434	A	A	23939434	1	1	15	0	1	0	0	0	0	0	0	0	13915	609	21	2		2	SACS	13	23939434	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	32715	23939434	91230444	1720	33370											
SACS	26278	broad.mit.edu	37	chr13	23942683	23942683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcccatgaattgtcacCaatgtgtgacttgaatctga	7	8	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23942683	A	A	23942683	1	1	15	0	1	0	0	0	0	0	0	0	13915	609	21	2		2	SACS	13	23942683	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3249	23942683	91227195	1721	33371											
RNF17	56163	broad.mit.edu	37	chr13	25341412	25341412	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagaatttcatcaataggtCaccattgtgaacttcaatgt	6	7	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25341412	A	A	25341412	3	1	15	1	0	0	0	0	1	0	0	0	13572	826	29	3	139	3	RNF17	13	25341412	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1398729	25341412	89828466	1722	33372											
PABPC3	5042	broad.mit.edu	37	chr13	25671349	25671349	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaagggtttggttttgTatgtttctcctccccagaag	10	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25671349	A	A	25671349	3	1	15	1	0	0	0	0	1	0	0	0	11459	1638	57	5	1015	5	PABPC3	13	25671349	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	329937	25671349	89498529	1723	33373											
WASF3	10810	broad.mit.edu	37	chr13	27259873	27259873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggagcaggaggccaagcGggagccagtggggaatgacg	21	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27259873	T	T	27259873	3	4	15	1	0	0	0	0	1	0	0	0	17381	1116	39	1	1430	1	WASF3	13	27259873	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1588524	27259873	87910005	1724	33374											
RXFP2	122042	broad.mit.edu	37	chr13	32360787	32360787	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtctctgtaagtgaaataTtacaattatattgattataa	5	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32360787	C	C	32360787	1	2	15	0	1	0	0	0	0	0	0	0	13871	1508	52	5		5	RXFP2	13	32360787	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	5100914	32360787	82809091	1725	33375											
RFC3	5983	broad.mit.edu	37	chr13	34395229	34395229	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttctacctagagcagttCagtttgactagggaaaaatg	11	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34395229	T	T	34395229	1	4	15	0	1	0	0	0	0	0	0	0	13354	841	29	4		4	RFC3	13	34395229	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2034442	34395229	80774649	1726	33376											
MAB21L1	4081	broad.mit.edu	37	chr13	36049377	36049377	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgcagcaaaatcccgttcAgccgatcacccaggcaagac	9	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36049377	G	G	36049377	3	3	15	1	0	0	0	0	1	0	0	0	9229	188	7	5	184	5	MAB21L1	13	36049377	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1654148	36049377	79120501	1727	33377											
SOHLH2	54937	broad.mit.edu	37	chr13	36767938	36767938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatactatatttagcaggtaCatacctttaaaattttcagg	5	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36767938	A	A	36767938	1	1	15	0	1	0	0	0	0	0	0	0	15038	493	17	3		3	SOHLH2	13	36767938	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	718561	36767938	78401940	1728	33378											
CCNA1	8900	broad.mit.edu	37	chr13	37012875	37012875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactggctggtggaggttgGggaagaatataaacttcgag	17	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37012875	T	T	37012875	3	4	15	1	0	0	0	0	1	0	0	0	2939	1232	43	2	782	2	CCNA1	13	37012875	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	244937	37012875	78157003	1729	33379											
SMAD9	4093	broad.mit.edu	37	chr13	37496635	37496635	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgggcagcccagaaaccCcaggcaaggagattgatcct	11	13	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37496635	A	A	37496635	1	1	15	0	1	0	0	0	0	0	0	0	14878	638	22	2		2	SMAD9	13	37496635	5'Flank	SNP	C	TCGA-05-4410-01A-21D-1855-08	483760	37496635	77673243	1730	33380											
POSTN	10631	broad.mit.edu	37	chr13	38154834	38154834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattttcaatgcagacagCctaggaaaggaaagaaaggt	11	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38154834	A	A	38154834	3	1	15	1	0	0	0	0	1	0	0	0	12354	753	26	3	1169	3	POSTN	13	38154834	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	658199	38154834	77015044	1731	33381											
LHFP	10186	broad.mit.edu	37	chr13	40174972	40174972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcaagtcacttaccccCaagaaactgaattcctccag	5	15	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40174972	A	A	40174972	3	1	15	1	0	0	0	0	1	0	0	0	8835	594	21	2	232	2	LHFP	13	40174972	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2020138	40174972	74994906	1732	33382											
COG6	57511	broad.mit.edu	37	chr13	40268805	40268805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaatagttgctgaacctgGggcagttttattatataaaa	9	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40268805	T	T	40268805	3	4	15	1	0	0	0	0	1	0	0	0	3694	1232	43	2	1155	2	COG6	13	40268805	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	93833	40268805	74901073	1733	33383											
KBTBD6	89890	broad.mit.edu	37	chr13	41705439	41705439	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttatacacccagaggtcTgtcctgggctgagcagctag	13	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41705439	C	C	41705439	2	2	15	1	0	0	0	0	0	0	0	1	8067	1567	55	5		5	KBTBD6	13	41705439	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	1436634	41705439	73464439	1734	33384											
ENOX1	55068	broad.mit.edu	37	chr13	43843782	43843782	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaaaaatatccacaataCccattcaaaattatgagtag	3	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43843782	A	A	43843782	1	1	15	0	1	0	0	0	0	0	0	0	5168	522	18	3		3	ENOX1	13	43843782	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2138343	43843782	71326096	1735	33385											
LCP1	3936	broad.mit.edu	37	chr13	46705123	46705123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgtcccaaagttactcCcattcagctcaaaggaagtg	8	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46705123	A	A	46705123	1	1	15	0	1	0	0	0	0	0	0	0	8763	638	22	2		2	LCP1	13	46705123	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2861341	46705123	68464755	1736	33386											
HTR2A	3356	broad.mit.edu	37	chr13	47409239	47409239	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgacctataggtcttgttGaacagtgtgtagactagtgg	13	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47409239	A	A	47409239	2	1	15	1	0	0	0	0	0	0	0	1	7511	1281	45	4		4	HTR2A	13	47409239	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	704116	47409239	67760639	1737	33387											
MED4	29079	broad.mit.edu	37	chr13	48664595	48664595	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacaaaaaccctttcacaGcatactgaacactcagggct	5	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48664595	A	A	48664595	1	1	15	0	1	0	0	0	0	0	0	0	9543	986	34	4		4	MED4	13	48664595	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1255356	48664595	66505283	1738	33388											
ITM2B	9445	broad.mit.edu	37	chr13	48832205	48832205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattattcttaaaaatccaGttgctgcctgtttttgcaag	6	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48832205	T	T	48832205	1	4	15	0	1	0	0	0	0	0	0	0	7983	1044	36	3		3	ITM2B	13	48832205	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	167610	48832205	66337673	1739	33389											
FNDC3A	22862	broad.mit.edu	37	chr13	49777385	49777385	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccagttatttacagtcttCaagttatgttgggaaaagat	8	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49777385	T	T	49777385	4	4	15	1	0	0	0	0	0	1	0	0	6027	827	29	4	3352	4	FNDC3A	13	49777385	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	945180	49777385	65392493	1740	33390											
CAB39L	81617	broad.mit.edu	37	chr13	49951249	49951249	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcattgcttgcagtgattTagacacttcttctgaagcct	7	9	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49951249	C	C	49951249	3	2	15	1	0	0	0	0	1	0	0	0	2552	1763	61	5	911	5	CAB39L	13	49951249	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	173864	49951249	65218629	1741	33391											
ATP7B	540	broad.mit.edu	37	chr13	52520526	52520526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtggccagccccagggagCaggggcaggcaatgcacagc	17	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52520526	A	A	52520526	3	1	15	1	0	0	0	0	1	0	0	0	1195	710	25	3	1479	3	ATP7B	13	52520526	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2569277	52520526	62649352	1742	33392											
NEK5	341676	broad.mit.edu	37	chr13	52693477	52693477	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatgaattgaagaaggcTacaatgttgggatgtttcat	11	3	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52693477	A	A	52693477	2	1	15	1	0	0	0	0	0	0	0	1	10422	1509	53	5		5	NEK5	13	52693477	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	172951	52693477	62476401	1743	33393											
OLFM4	10562	broad.mit.edu	37	chr13	53608516	53608516	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccggctccgtggatgacCgtgggacctgccagtgctct	13	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53608516	T	T	53608516	3	4	15	1	0	0	0	0	1	0	0	0	10950	652	23	4	244	4	OLFM4	13	53608516	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	915039	53608516	61561362	1744	33394											
PCDH17	27253	broad.mit.edu	37	chr13	58208014	58208014	+	Frame_Shift_Del	DEL	G	-	-													caacgtgaccatcgtggcgcGggacgggggctctcctcccc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58208014	-	-	58208014	7	5	15	1	0	1	0	1	0	0	0	0	11606	1116	39	0	1336	0	PCDH17	13	58208014	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	4599498	58208014	56961864	1745	33395											
PCDH17	27253	broad.mit.edu	37	chr13	58240910	58240910	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgctgtgacatgtctGttagggaggcactcaagatg	13	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58240910	A	A	58240910	3	1	15	1	0	0	0	0	1	0	0	0	11606	1377	48	4	2750	4	PCDH17	13	58240910	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	32896	58240910	56928968	1746	33396											
TDRD3	81550	broad.mit.edu	37	chr13	61084166	61084166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattttgtttaacattatgGtaagtggaaggaacaccagt	9	4	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61084166	T	T	61084166	1	4	15	0	1	0	0	0	0	0	0	0	15854	1276	44	3		3	TDRD3	13	61084166	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2843256	61084166	54085712	1747	33397											
KLHL1	57626	broad.mit.edu	37	chr13	70413317	70413317	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaataatacacaatagctGttaataatgttttcaaagag	7	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70413317	A	A	70413317	1	1	15	0	1	0	0	0	0	0	0	0	8436	1392	48	4		4	KLHL1	13	70413317	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	9329151	70413317	44756561	1748	33398											
KLHL1	57626	broad.mit.edu	37	chr13	70681666	70681666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctcttggcttttgagcaGgcgactctggctgggtcccc	12	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70681666	T	T	70681666	3	4	15	1	0	0	0	0	1	0	0	0	8436	991	35	2	2124	2	KLHL1	13	70681666	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	268349	70681666	44488212	1749	33399											
DACH1	1602	broad.mit.edu	37	chr13	72133996	72133996	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgagcaggggagctggacAcgctgctgctgcgatgtgat	16	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72133996	T	T	72133996	3	4	15	1	0	0	0	0	1	0	0	0	4253	159	6	5	757	5	DACH1	13	72133996	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1452330	72133996	43035882	1750	33400											
DACH1	1602	broad.mit.edu	37	chr13	72255995	72255995	+	Frame_Shift_Del	DEL	G	-	-													gcatgatgtgagagttctctGgggaggtgacactttgagtc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72255995	-	-	72255995	7	5	15	1	0	1	0	1	0	0	0	0	4253	1348	47	0	1264	0	DACH1	13	72255995	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	121999	72255995	42913883	1751	33401											
RBM26	64062	broad.mit.edu	37	chr13	79929484	79929484	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttcgtatgttgcaaattgGattagggcaccttcaggatc	10	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79929484	A	A	79929484	2	1	15	1	0	0	0	0	0	0	0	1	13234	1164	41	4		4	RBM26	13	79929484	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	7673489	79929484	35240394	1752	33402											
SPRY2	10253	broad.mit.edu	37	chr13	80911103	80911103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgtgtacaacagtgagaCtggctgcaagaacatgggtt	12	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80911103	A	A	80911103	3	1	15	1	0	0	0	0	1	0	0	0	15224	564	20	3	213	3	SPRY2	13	80911103	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	981619	80911103	34258775	1753	33403											
SPRY2	10253	broad.mit.edu	37	chr13	80911650	80911650	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagcaggcttgagcccaggtCttgggacgacagtaggcccc	15	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80911650	A	A	80911650	3	1	15	1	0	0	0	0	1	0	0	0	15224	913	32	3	760	3	SPRY2	13	80911650	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	547	80911650	34258228	1754	33404											
SLITRK1	114798	broad.mit.edu	37	chr13	84454950	84454951	+	Missense_Mutation	DNP	GG	CT	CT													cggccgatcagggcattcttGggaatgttttccagccattc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	84454951	CT	CT	84454950	3	2	15	1	0	0	0	0	1	0	0	0	14856	1335	47	4	1401	4	SLITRK1	13	84454950	Missense_Mutation	DNP	GG	TCGA-05-4410-01A-21D-1855-08	3543300	84454950	30714928	1755	33405											
SLITRK6	84189	broad.mit.edu	37	chr13	86368425	86368425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattctgttgattggttcGtggttttgtatttcatattt	8	3	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86368425	T	T	86368425	3	4	15	1	0	0	0	0	1	0	0	0	14861	1145	40	3	310	3	SLITRK6	13	86368425	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1913475	86368425	28801453	1756	33406											
SLITRK5	26050	broad.mit.edu	37	chr13	88329046	88329046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctacctgaatggcaacaGgatcgagaggctgagcccgg	13	12	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88329046	T	T	88329046	3	4	15	1	0	0	0	0	1	0	0	0	14860	1000	35	2	1405	2	SLITRK5	13	88329046	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1960621	88329046	26840832	1757	33407											
GPC6	10082	broad.mit.edu	37	chr13	94958244	94958244	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttcttccaggtctttcaggGatgtggtcagcccaaacctg	11	11	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94958244	A	A	94958244	3	1	15	1	0	0	0	0	1	0	0	0	6667	1174	41	4	1041	4	GPC6	13	94958244	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	6629198	94958244	20211634	1758	33408											
TGDS	23483	broad.mit.edu	37	chr13	95235491	95235491	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcacgtacgaatgaaagatCtaaaagaaaagagtgaaaag	11	4	1	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95235491	G	G	95235491	5	3	15	1	0	0	0	0	0	0	1	0	15937	927	32	4	771	4	TGDS	13	95235491	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	277247	95235491	19934387	1759	33409											
CLDN10	9071	broad.mit.edu	37	chr13	96230256	96230256	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaacagtttgataaaaaTgcttatgtctaaaagagctc	6	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96230256	A	A	96230256	3	1	15	1	0	0	0	0	1	0	0	0	3503	1461	51	5	911	5	CLDN10	13	96230256	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	994765	96230256	18939622	1760	33410											
DZIP1	22873	broad.mit.edu	37	chr13	96264337	96264337	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattctgctcctggagtctcTgccctagctcttctatcctt	6	15	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96264337	A	A	96264337	3	1	15	1	0	0	0	0	1	0	0	0	4903	1580	55	5	1387	5	DZIP1	13	96264337	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	34081	96264337	18905541	1761	33411											
DZIP1	22873	broad.mit.edu	37	chr13	96272140	96272140	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actggtttcttaaccttaccCgacccttctctttcttgtgt	5	13	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96272140	G	G	96272140	3	3	15	1	0	0	0	0	1	0	0	0	4903	666	23	4	1487	4	DZIP1	13	96272140	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	7803	96272140	18897738	1762	33412											
DNAJC3	5611	broad.mit.edu	37	chr13	96394796	96394796	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtggactgctgggggtcActtacttactttttccccac	9	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96394796	T	T	96394796	1	4	15	0	1	0	0	0	0	0	0	0	4687	174	6	5		5	DNAJC3	13	96394796	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	122656	96394796	18775082	1763	33413											
UGGT2	55757	broad.mit.edu	37	chr13	96665456	96665456	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaagttaaaaaaagttagAtaactattctggtgaaaatt	7	2	1	2	rs146577874	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96665456	G	G	96665456	1	3	15	0	1	0	0	0	0	0	0	0	17068	348	12	5		5	UGGT2	13	96665456	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	270660	96665456	18504422	1764	33414											
HS6ST3	266722	broad.mit.edu	37	chr13	97484870	97484870	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggaagaagccccaccccAgatgagctgcctacctgcta	10	14	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97484870	G	G	97484870	2	3	15	1	0	0	0	0	0	0	0	1	7439	175	7	5		5	HS6ST3	13	97484870	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	819414	97484870	17685008	1765	33415											
SLC15A1	6564	broad.mit.edu	37	chr13	99364135	99364135	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaacaaggcccagaacatTgggagtggaatatacaggaa	11	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99364135	A	A	99364135	2	1	15	1	0	0	0	0	0	0	0	1	14511	1799	63	5		5	SLC15A1	13	99364135	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	1879265	99364135	15805743	1766	33416											
PCCA	5095	broad.mit.edu	37	chr13	100925601	100925601	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaatacaagactccagGtaacaacaactgttatttat	5	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100925601	T	T	100925601	5	4	15	1	0	0	0	0	0	0	1	0	11598	1275	44	3	1112	3	PCCA	13	100925601	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	1561466	100925601	14244277	1767	33417											
TMTC4	84899	broad.mit.edu	37	chr13	101266800	101266800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaaacaacaataaaaaaCcaaaacctaactttaattat	0	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101266800	A	A	101266800	1	1	15	0	1	0	0	0	0	0	0	0	16386	522	18	3		3	TMTC4	13	101266800	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	341199	101266800	13903078	1768	33418											
NALCN	259232	broad.mit.edu	37	chr13	101714351	101714351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcaggcacttcttgagcCacatgcggatggtctgcttg	12	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101714351	A	A	101714351	3	1	15	1	0	0	0	0	1	0	0	0	10242	595	21	2	508	2	NALCN	13	101714351	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	447551	101714351	13455527	1769	33419											
ITGBL1	9358	broad.mit.edu	37	chr13	102235729	102235729	+	Intron	DEL	T	-	-													aagggctcttccaattcctgTttttctggagggggaggtgg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102235729	-	-	102235729	6	5	15	0	1	1	0	1	0	0	0	0	7972	1740	60	0		0	ITGBL1	13	102235729	Intron	DEL	T	TCGA-05-4410-01A-21D-1855-08	521378	102235729	12934149	1770	33420											
FGF14	2259	broad.mit.edu	37	chr13	102375181	102375181	+	Nonstop_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacacctgtgaggatctggCtatgttgtcttactcttgtt	9	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102375181	A	A	102375181	4	1	15	1	0	0	0	0	0	0	0	0	5900	808	28	3	3	3	FGF14	13	102375181	Nonstop_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	139452	102375181	12794697	1771	33421											
SLC10A2	6555	broad.mit.edu	37	chr13	103703648	103703648	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctagccagaagaaacccCagggagtaacccgccacagg	10	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103703648	A	A	103703648	2	1	15	1	0	0	0	0	0	0	0	1	14487	581	21	2		2	SLC10A2	13	103703648	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1328467	103703648	11466230	1772	33422											
SLC10A2	6555	broad.mit.edu	37	chr13	103710528	103710528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactagggcaataacggtcaGgtgtgagcctggtctgagag	15	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103710528	T	T	103710528	1	4	15	0	1	0	0	0	0	0	0	0	14487	1015	35	2		2	SLC10A2	13	103710528	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6880	103710528	11459350	1773	33423											
COL4A2	1284	broad.mit.edu	37	chr13	111114601	111114601	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcacctgcctgggcagCttcacatgcaaatccctttc	10	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111114601	G	G	111114601	1	3	15	0	1	0	0	0	0	0	0	0	3722	812	28	4		4	COL4A2	13	111114601	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7404073	111114601	4055277	1774	33424											
ING1	3621	broad.mit.edu	37	chr13	111371668	111371668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcactgtgtgcagcgcGcgctgatccgcagccaggag	15	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111371668	T	T	111371668	3	4	15	1	0	0	0	0	1	0	0	0	7805	1087	38	3	812	3	ING1	13	111371668	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	257067	111371668	3798210	1775	33425											
ANKRD10	55608	broad.mit.edu	37	chr13	111562851	111562851	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cataaattccagtctgccctCaggtaaagatatcaaactct	5	11	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111562851	T	T	111562851	1	4	15	0	1	0	0	0	0	0	0	0	638	841	29	4		4	ANKRD10	13	111562851	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	191183	111562851	3607027	1776	33426											
MCF2L	23263	broad.mit.edu	37	chr13	113729424	113729424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagctccggcacctctGtgaccagttctctgcggaga	12	14	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113729424	T	T	113729424	3	4	15	1	0	0	0	0	1	0	0	0	9472	1377	48	3	1537	3	MCF2L	13	113729424	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2166573	113729424	1440454	1777	33427											
F7	2155	broad.mit.edu	37	chr13	113770069	113770069	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgctcctgtcggtgccacGaggggtactctctgctggca	14	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113770069	T	T	113770069	4	4	15	1	0	0	0	0	0	1	0	0	5392	1059	37	3	548	3	F7	13	113770069	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	40645	113770069	1399809	1778	33428											
CUL4A	8451	broad.mit.edu	37	chr13	113897369	113897369	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggacaaggtggaccacGtgatcgaggtctgcttccag	13	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113897369	A	A	113897369	3	1	15	1	0	0	0	0	1	0	0	0	4090	1145	40	4	1165	4	CUL4A	13	113897369	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	127300	113897369	1272509	1779	33429											
DCUN1D2	55208	broad.mit.edu	37	chr13	114128671	114128671	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaggcacgcagctccagcTggagaccgtatttcccaact	9	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114128671	A	A	114128671	1	1	15	0	1	0	0	0	0	0	0	0	4347	1595	55	5		5	DCUN1D2	13	114128671	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	231302	114128671	1041207	1780	33430											
RASA3	22821	broad.mit.edu	37	chr13	114766491	114766491	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacaccccccactttctgCgttctgagacctgaggcagg	9	16	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114766491	G	G	114766491	1	3	15	0	1	0	0	0	0	0	0	0	13170	783	27	4		4	RASA3	13	114766491	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	637820	114766491	403387	1781	33431											
OR4Q3	441669	broad.mit.edu	37	chr14	20216396	20216396	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagcttctctgtggataaGatattctccttgttttacac	7	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20216396	A	A	20216396	2	1	15	1	0	0	0	0	0	0	0	1	11175	933	33	4		4	OR4Q3	14	20216396	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08		20216396	87133144	1782	33432											
OR4K2	390431	broad.mit.edu	37	chr14	20345226	20345226	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccactaagcagctttctcaCagacaagattctgtctgtgt	8	11	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20345226	G	G	20345226	3	3	15	1	0	0	0	0	1	0	0	0	11166	478	17	4	802	4	OR4K2	14	20345226	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	128830	20345226	87004314	1783	33433											
OR4K14	122740	broad.mit.edu	37	chr14	20482658	20482658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtgctttggatgtgctaCcggcagcacgctgtctgata	13	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20482658	A	A	20482658	3	1	15	1	0	0	0	0	1	0	0	0	11163	507	18	3	240	3	OR4K14	14	20482658	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	137432	20482658	86866882	1784	33434											
OR4L1	122742	broad.mit.edu	37	chr14	20528892	20528892	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtgtaccaaaaaaatcatCacatgggctctccaaggcgc	8	12	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20528892	T	T	20528892	3	4	15	1	0	0	0	0	1	0	0	0	11168	838	29	4	691	4	OR4L1	14	20528892	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	46234	20528892	86820648	1785	33435											
TEP1	7011	broad.mit.edu	37	chr14	20845891	20845891	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcccacggggccgacccaGagaccctgaccacacctgaa	11	17	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20845891	A	A	20845891	2	1	15	1	0	0	0	0	0	0	0	1	15881	933	33	4		4	TEP1	14	20845891	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	316999	20845891	86503649	1786	33436											
TEP1	7011	broad.mit.edu	37	chr14	20872001	20872001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcagtacggagacaggCgggcaggggcaccagcttat	16	10	0	1	rs34770935	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20872001	A	A	20872001	3	1	15	1	0	0	0	0	1	0	0	0	15881	768	27	3	7008	3	TEP1	14	20872001	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	26110	20872001	86477539	1787	33437											
OSGEP	55644	broad.mit.edu	37	chr14	20917122	20917122	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaccttatgtccccttaCcgctttgccatctgttcaat	4	15	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20917122	A	A	20917122	5	1	15	1	0	0	0	0	0	0	1	0	11381	521	18	3	477	3	OSGEP	14	20917122	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	45121	20917122	86432418	1788	33438											
SLC7A7	9056	broad.mit.edu	37	chr14	23282657	23282657	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctggcattgccctttaagGaagaaagatgatgctataga	10	7	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23282657	A	A	23282657	1	1	15	0	1	0	0	0	0	0	0	0	14817	1189	41	4		4	SLC7A7	14	23282657	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2365535	23282657	84066883	1789	33439											
MYH6	4624	broad.mit.edu	37	chr14	23867979	23867979	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagagagtggccatgaGcttgagggaggacttctggt	18	5	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23867979	A	A	23867979	3	1	15	1	0	0	0	0	1	0	0	0	10132	971	34	4	4070	4	MYH6	14	23867979	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	585322	23867979	83481561	1790	33440											
MYH7	4625	broad.mit.edu	37	chr14	23889040	23889040	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagttggaggaggggaggcCgagcagagcctgccttggcc	19	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23889040	G	G	23889040	1	3	15	0	1	0	0	0	0	0	0	0	10133	667	23	4		4	MYH7	14	23889040	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	21061	23889040	83460500	1791	33441											
FITM1	161247	broad.mit.edu	37	chr14	24601569	24601569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgtgtggcggggagccgGccgggccttcctgctcatcg	17	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24601569	T	T	24601569	3	4	15	1	0	0	0	0	1	0	0	0	5955	1203	42	3	422	3	FITM1	14	24601569	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	712529	24601569	82747971	1792	33442											
CMA1	1215	broad.mit.edu	37	chr14	24976618	24976618	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcttataaggaaaccaccAcaaaattttgagggaccgtt	8	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24976618	G	G	24976618	2	3	15	1	0	0	0	0	0	0	0	1	3606	157	6	5		5	CMA1	14	24976618	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	375049	24976618	82372922	1793	33443											
NOVA1	4857	broad.mit.edu	37	chr14	26917470	26917470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcctagaatggcactggCagctaggggagaagcagctc	14	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26917470	A	A	26917470	3	1	15	1	0	0	0	0	1	0	0	0	10649	710	25	3	308	3	NOVA1	14	26917470	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1940852	26917470	80432070	1794	33444											
AKAP6	9472	broad.mit.edu	37	chr14	33293232	33293232	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatggcttcgacagccctAaaaagtaaatctcaacctga	7	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33293232	G	G	33293232	2	3	15	1	0	0	0	0	0	0	0	1	455	349	13	5		5	AKAP6	14	33293232	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	6375762	33293232	74056308	1795	33445											
EGLN3	112399	broad.mit.edu	37	chr14	34396264	34396264	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagataagcagatataagGaaagagatttaatggtacta	10	2	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34396264	T	T	34396264	1	4	15	0	1	0	0	0	0	0	0	0	5010	1189	41	3		3	EGLN3	14	34396264	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1103032	34396264	72953276	1796	33446											
EGLN3	112399	broad.mit.edu	37	chr14	34398174	34398174	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagtttgctatcagctatGgggtgtggtcaatcccccac	10	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34398174	A	A	34398174	1	1	15	0	1	0	0	0	0	0	0	0	5010	1363	47	4		4	EGLN3	14	34398174	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1910	34398174	72951366	1797	33447											
BRMS1L	84312	broad.mit.edu	37	chr14	36337046	36337046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgatgttaattgttaatGttctgaccctttgttcttct	7	6	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36337046	T	T	36337046	1	4	15	0	1	0	0	0	0	0	0	0	1526	1392	48	3		3	BRMS1L	14	36337046	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1938872	36337046	71012494	1798	33448											
SEC23A	10484	broad.mit.edu	37	chr14	39512155	39512155	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatagatgtttccaggTtattttccaagtttctttta	5	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39512155	A	A	39512155	1	1	15	0	1	0	0	0	0	0	0	0	14104	1740	60	5		5	SEC23A	14	39512155	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	3175109	39512155	67837385	1799	33449											
SEC23A	10484	broad.mit.edu	37	chr14	39524291	39524291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagattatctgcaacaaaCatttactacaaatgaaagca	5	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39524291	A	A	39524291	1	1	15	0	1	0	0	0	0	0	0	0	14104	493	17	3		3	SEC23A	14	39524291	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	12136	39524291	67825249	1800	33450											
C14orf28	122525	broad.mit.edu	37	chr14	45372554	45372554	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtgtttataaggaaacCtaggcagatgtgctccttga	11	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45372554	G	G	45372554	1	3	15	0	1	0	0	0	0	0	0	0	1783	696	24	4		4	C14orf28	14	45372554	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5848263	45372554	61976986	1801	33451											
MDGA2	161357	broad.mit.edu	37	chr14	47530601	47530601	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagacatcaggatcagtcTgtgtaatgaccatccgctca	10	10	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47530601	A	A	47530601	3	1	15	1	0	0	0	0	1	0	0	0	9500	1580	55	5	1745	5	MDGA2	14	47530601	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	2158047	47530601	59818939	1802	33452											
NIN	51199	broad.mit.edu	37	chr14	51228417	51228417	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaacatagaatgtgctgctCtatgagaaaaaagaattgga	9	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51228417	G	G	51228417	1	3	15	0	1	0	0	0	0	0	0	0	10512	928	32	4		4	NIN	14	51228417	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	3697816	51228417	56121123	1803	33453											
DDHD1	80821	broad.mit.edu	37	chr14	53570567	53570567	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacgcattactggtattttAtcagcctctgaaaaagagaa	7	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53570567	C	C	53570567	3	2	15	1	0	0	0	0	1	0	0	0	4359	446	16	5	1929	5	DDHD1	14	53570567	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	2342150	53570567	53778973	1804	33454											
BMP4	652	broad.mit.edu	37	chr14	54416766	54416766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatctcagcggcacccacatCcctctactaccatctcctga	5	18	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54416766	A	A	54416766	3	1	15	1	0	0	0	0	1	0	0	0	1468	855	30	3	19	3	BMP4	14	54416766	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	846199	54416766	52932774	1805	33455											
C14orf101	54916	broad.mit.edu	37	chr14	57076090	57076090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattaaaaaaacaatatttGtcaatgacagtagatcaaat	5	4	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57076090	T	T	57076090	1	4	15	0	1	0	0	0	0	0	0	0	1747	1392	48	3		3	C14orf101	14	57076090	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2659324	57076090	50273450	1806	33456											
C14orf37	145407	broad.mit.edu	37	chr14	58563716	58563716	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctctaggcaaaaagaaatCaaagggaagcataaacatat	7	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58563716	A	A	58563716	1	1	15	0	1	0	0	0	0	0	0	0	1784	841	29	3		3	C14orf37	14	58563716	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1487626	58563716	48785824	1807	33457											
C14orf39	317761	broad.mit.edu	37	chr14	60925284	60925284	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctctagaaacctgatcacCaagctaacaacatctcacat	3	14	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60925284	G	G	60925284	1	3	15	0	1	0	0	0	0	0	0	0	1785	609	21	4		4	C14orf39	14	60925284	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2361568	60925284	46424256	1808	33458											
SGPP1	81537	broad.mit.edu	37	chr14	64152941	64152941	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatgtgctgtcttgcttttCgaatatcatcacacggtata	7	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64152941	T	T	64152941	3	4	15	1	0	0	0	0	1	0	0	0	14332	884	31	4	121	4	SGPP1	14	64152941	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3227657	64152941	43196599	1809	33459											
SYNE2	23224	broad.mit.edu	37	chr14	64653253	64653253	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgatggttttgaaggagCaaatagagcatttgcacaga	12	4	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64653253	T	T	64653253	4	4	15	1	0	0	0	0	0	1	0	0	15565	711	25	4	18050	4	SYNE2	14	64653253	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	500312	64653253	42696287	1810	33460											
SMOC1	64093	broad.mit.edu	37	chr14	70418877	70418877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaataagtgaccgtgaccCacagtgcaacctccactgct	7	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70418877	A	A	70418877	3	1	15	1	0	0	0	0	1	0	0	0	14915	594	21	2	128	2	SMOC1	14	70418877	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5765624	70418877	36930663	1811	33461											
DNAL1	83544	broad.mit.edu	37	chr14	74125629	74125629	+	Frame_Shift_Del	DEL	A	-	-													tccccctatagagaagatggAtgcatccttgtccatgcttg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74125629	-	-	74125629	7	5	15	1	0	1	0	1	0	0	0	0	4697	333	12	0	132	0	DNAL1	14	74125629	Frame_Shift_Del	DEL	A	TCGA-05-4410-01A-21D-1855-08	3706752	74125629	33223911	1812	33462											
YLPM1	56252	broad.mit.edu	37	chr14	75269332	75269332	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggctgaccatctaccacctCaggaatcaagattgcagaat	8	11	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75269332	G	G	75269332	3	3	15	1	0	0	0	0	1	0	0	0	17613	827	29	4	4496	4	YLPM1	14	75269332	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1143703	75269332	32080208	1813	33463											
NRXN3	9369	broad.mit.edu	37	chr14	78709848	78709848	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggagctgcagccccagCggccctacatggatgtggtc	15	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78709848	A	A	78709848	1	1	15	0	1	0	0	0	0	0	0	0	10762	783	27	3		3	NRXN3	14	78709848	RNA	SNP	C	TCGA-05-4410-01A-21D-1855-08	3440516	78709848	28639692	1814	33464											
TSHR	7253	broad.mit.edu	37	chr14	81468068	81468068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcacgagtgttcttacaGgaaacacaactatttgaaat	7	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81468068	T	T	81468068	1	4	15	0	1	0	0	0	0	0	0	0	16747	1015	35	2		2	TSHR	14	81468068	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2758220	81468068	25881472	1815	33465											
GPR65	8477	broad.mit.edu	37	chr14	88477441	88477441	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagacaactggactttctctCctgccttgtgcaaagggagt	10	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88477441	T	T	88477441	3	4	15	1	0	0	0	0	1	0	0	0	6771	855	30	4	252	4	GPR65	14	88477441	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	7009373	88477441	18872099	1816	33466											
SERPINA11	256394	broad.mit.edu	37	chr14	94913019	94913019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacacacacaaaaccacaGttcctcttggctatgcaagt	6	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94913019	T	T	94913019	1	4	15	0	1	0	0	0	0	0	0	0	14201	1044	36	3		3	SERPINA11	14	94913019	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6435578	94913019	12436521	1817	33467											
SERPINA11	256394	broad.mit.edu	37	chr14	94914523	94914523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtcctggctgaactccgGgaggcagtccacgacttgcc	13	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94914523	T	T	94914523	3	4	15	1	0	0	0	0	1	0	0	0	14201	1232	43	2	695	2	SERPINA11	14	94914523	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1504	94914523	12435017	1818	33468											
SERPINA3	12	broad.mit.edu	37	chr14	95089859	95089859	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagcactaggtgctcaatgCacattagaccccttagtggc	9	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95089859	G	G	95089859	1	3	15	0	1	0	0	0	0	0	0	0	14203	725	25	4		4	SERPINA3	14	95089859	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	175336	95089859	12259681	1819	33469											
C14orf49	161176	broad.mit.edu	37	chr14	95910916	95910916	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtccaagagcttcctcTgcaggggctcaaaagctgct	13	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95910916	A	A	95910916	3	1	15	1	0	0	0	0	1	0	0	0	1789	1580	55	5	1281	5	C14orf49	14	95910916	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	821057	95910916	11438624	1820	33470											
TCL1A	8115	broad.mit.edu	37	chr14	96178511	96178511	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggccagacatggaggaggGcaaacccaagatcacccgat	12	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96178511	C	C	96178511	1	2	15	0	1	0	0	0	0	0	0	0	15826	1218	42	4		4	TCL1A	14	96178511	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	267595	96178511	11171029	1821	33471											
ATG2B	55102	broad.mit.edu	37	chr14	96807883	96807883	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctccaggaagcacttcattCtgtttcaacgtgagactcaa	8	11	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96807883	T	T	96807883	2	4	15	1	0	0	0	0	0	0	0	1	1098	912	32	4		4	ATG2B	14	96807883	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	629372	96807883	10541657	1822	33472											
PPP2R5C	5527	broad.mit.edu	37	chr14	102384058	102384058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgagtgggcttcctgcGggagagggccctggggggcg	20	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102384058	T	T	102384058	1	4	15	0	1	0	0	0	0	0	0	0	12495	1131	39	1		1	PPP2R5C	14	102384058	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	5576175	102384058	4965482	1823	33473											
TECPR2	9895	broad.mit.edu	37	chr14	102891653	102891653	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgaagggacgccaccatatCttctgtgtctataggcaaga	11	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102891653	G	G	102891653	1	3	15	0	1	0	0	0	0	0	0	0	15866	928	32	4		4	TECPR2	14	102891653	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	507595	102891653	4457887	1824	33474											
TECPR2	9895	broad.mit.edu	37	chr14	102964478	102964478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggctgtgggcccgcccGgctacctcctccaacggctg	14	16	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102964478	T	T	102964478	3	4	15	1	0	0	0	0	1	0	0	0	15866	1116	39	1	4209	1	TECPR2	14	102964478	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	72825	102964478	4385062	1825	33475											
TNFAIP2	7127	broad.mit.edu	37	chr14	103599937	103599937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggtcggagataggccGctggtgcctctctaagccca	13	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103599937	T	T	103599937	1	4	15	0	1	0	0	0	0	0	0	0	16396	1102	38	3		3	TNFAIP2	14	103599937	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	635459	103599937	3749603	1826	33476											
CDCA4	55038	broad.mit.edu	37	chr14	105477708	105477708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtccaggtcgtagtaggGgctgtccacgtctgagaaca	14	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105477708	C	C	105477708	3	2	15	1	0	0	0	0	1	0	0	0	3118	1232	43	4	170	4	CDCA4	14	105477708	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1877771	105477708	1871832	1827	33477											
CDCA4	55038	broad.mit.edu	37	chr14	105477746	105477746	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagctcttccatgcagctgGggtttttagtctccagcgtt	10	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105477746	C	C	105477746	3	2	15	1	0	0	0	0	1	0	0	0	3118	1232	43	4	208	4	CDCA4	14	105477746	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	38	105477746	1871794	1828	33478											
SNRPN	6638	broad.mit.edu	37	chr15	25154990	25154990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctgcagaacagagaccCgcgtccacagctcaacagag	9	15	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25154990	A	A	25154990	1	1	15	0	1	0	0	0	0	0	0	0	14984	667	23	1		1	SNRPN	15	25154990	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08		25154990	77376402	1829	33479											
GABRG3	2567	broad.mit.edu	37	chr15	27772565	27772565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttttacaacatgctaccCgtcccctgttcaggcatcac	5	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27772565	A	A	27772565	1	1	15	0	1	0	0	0	0	0	0	0	6233	667	23	1		1	GABRG3	15	27772565	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2617575	27772565	74758827	1830	33480											
SCG5	6447	broad.mit.edu	37	chr15	32976947	32976947	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggcagggatgagcaatatGggcagaaggagagaagaaaa	16	3	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32976947	C	C	32976947	1	2	15	0	1	0	0	0	0	0	0	0	14005	1363	47	4		4	SCG5	15	32976947	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	5204382	32976947	69554445	1831	33481											
RYR3	6263	broad.mit.edu	37	chr15	34156415	34156415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattaagaatcatataccCgtgttagatctccctttcct	5	10	2	2	rs59611174	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34156415	A	A	34156415	1	1	15	0	1	0	0	0	0	0	0	0	13881	667	23	1		1	RYR3	15	34156415	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1179468	34156415	68374977	1832	33482											
SLC12A6	9990	broad.mit.edu	37	chr15	34536239	34536239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtttgcaaggcacatgCcaagtttacaaagaggtaac	9	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34536239	A	A	34536239	3	1	15	1	0	0	0	0	1	0	0	0	14500	739	26	3	1518	3	SLC12A6	15	34536239	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	379824	34536239	67995153	1833	33483											
LPCAT4	254531	broad.mit.edu	37	chr15	34654913	34654913	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaagtgaggtatgaccactCccaccctcttttcccaaggt	7	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34654913	T	T	34654913	1	4	15	0	1	0	0	0	0	0	0	0	9000	870	30	4		4	LPCAT4	15	34654913	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	118674	34654913	67876479	1834	33484											
ACTC1	70	broad.mit.edu	37	chr15	35084280	35084280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgcctctgcaccagaccCtacaactcaccaatgaagga	7	15	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35084280	A	A	35084280	1	1	15	0	1	0	0	0	0	0	0	0	195	696	24	2		2	ACTC1	15	35084280	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	429367	35084280	67447112	1835	33485											
AQR	9716	broad.mit.edu	37	chr15	35235335	35235335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagaagtgtggcaagcacCaaccccataaagtgacacag	10	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35235335	A	A	35235335	1	1	15	0	1	0	0	0	0	0	0	0	837	609	21	2		2	AQR	15	35235335	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	151055	35235335	67296057	1836	33486											
TMCO5A	145942	broad.mit.edu	37	chr15	38228669	38228669	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagataagattcagaggtgaGtattaaggtttcatgaggga	13	2	2	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38228669	A	A	38228669	1	1	15	0	1	0	0	0	0	0	0	0	16122	1044	36	4		4	TMCO5A	15	38228669	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2993334	38228669	64302723	1837	33487											
LTK	4058	broad.mit.edu	37	chr15	41797642	41797642	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaaactcttcatgtcccctCcagacatcagttccagcaga	7	14	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41797642	G	G	41797642	3	3	15	1	0	0	0	0	1	0	0	0	9167	855	30	4	838	4	LTK	15	41797642	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3568973	41797642	60733750	1838	33488											
LTK	4058	broad.mit.edu	37	chr15	41799191	41799191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccttacacaagggatgtGggccagattttttctgggac	11	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41799191	T	T	41799191	1	4	15	0	1	0	0	0	0	0	0	0	9167	1363	47	2		2	LTK	15	41799191	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1549	41799191	60732201	1839	33489											
TYRO3	7301	broad.mit.edu	37	chr15	41861093	41861093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatgagctgacagtggaGgggaccagggccaatttgac	16	8	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41861093	T	T	41861093	3	4	15	1	0	0	0	0	1	0	0	0	16940	991	35	2	1159	2	TYRO3	15	41861093	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	61902	41861093	60670299	1840	33490											
PLA2G4F	255189	broad.mit.edu	37	chr15	42436333	42436333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggttggggaaggcgtccGggtgtgtgtctgcaaggaac	19	7	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42436333	T	T	42436333	3	4	15	1	0	0	0	0	1	0	0	0	12101	1116	39	1	576	1	PLA2G4F	15	42436333	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	575240	42436333	60095059	1841	33491											
CAPN3	825	broad.mit.edu	37	chr15	42694167	42694167	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacaagcaaaaaataccAgggggggcattagagaggca	13	6	0	1	rs150759842	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42694167	T	T	42694167	1	4	15	0	1	0	0	0	0	0	0	0	2654	203	7	5		5	CAPN3	15	42694167	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	257834	42694167	59837225	1842	33492											
SEMA6D	80031	broad.mit.edu	37	chr15	48062872	48062872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaagatgcagagtccgcCcagtcatgcacagactccag	9	13	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48062872	A	A	48062872	2	1	15	1	0	0	0	0	0	0	0	1	14155	610	22	2		2	SEMA6D	15	48062872	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	5368705	48062872	54468520	1843	33493											
MYEF2	50804	broad.mit.edu	37	chr15	48443858	48443858	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctaaattatgaaaagacgCgtaagtcacaaatataaaat	5	5	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48443858	T	T	48443858	1	4	15	0	1	0	0	0	0	0	0	0	10118	783	27	4		4	MYEF2	15	48443858	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	380986	48443858	54087534	1844	33494											
FBN1	2200	broad.mit.edu	37	chr15	48776242	48776242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataaacttagcctactagCataagactattaactctcaa	3	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48776242	A	A	48776242	1	1	15	0	1	0	0	0	0	0	0	0	5759	725	25	3		3	FBN1	15	48776242	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	332384	48776242	53755150	1845	33495											
SHC4	399694	broad.mit.edu	37	chr15	49127011	49127011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgttttgcttggcctccCtgtagtccactcagcacata	8	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49127011	A	A	49127011	3	1	15	1	0	0	0	0	1	0	0	0	14386	680	24	2	208	2	SHC4	15	49127011	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	350769	49127011	53404381	1846	33496											
SHC4	399694	broad.mit.edu	37	chr15	49217220	49217220	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttagcttcacggcaactTcctgggaagcacctaaaatc	7	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49217220	A	A	49217220	1	1	15	0	1	0	0	0	0	0	0	0	14386	1798	62	5		5	SHC4	15	49217220	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	90209	49217220	53314172	1847	33497											
SECISBP2L	9728	broad.mit.edu	37	chr15	49284854	49284854	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagatctcggcaactgccatCcaaagagccagtctctgtac	8	13	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49284854	T	T	49284854	3	4	15	1	0	0	0	0	1	0	0	0	14120	855	30	4	416	4	SECISBP2L	15	49284854	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	67634	49284854	53246538	1848	33498											
DTWD1	56986	broad.mit.edu	37	chr15	49935624	49935624	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctacaattgaagccatttActactttctggtagactacc	5	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49935624	T	T	49935624	3	4	15	1	0	0	0	0	1	0	0	0	4831	391	14	5	778	5	DTWD1	15	49935624	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	650770	49935624	52595768	1849	33499											
HDC	3067	broad.mit.edu	37	chr15	50534698	50534698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgttgcaactgagggagCgcaccgtcttcttcttagtc	10	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50534698	A	A	50534698	3	1	15	1	0	0	0	0	1	0	0	0	7082	768	27	3	244	3	HDC	15	50534698	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	599074	50534698	51996694	1850	33500											
FAM81A	145773	broad.mit.edu	37	chr15	59752207	59752207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaagcctcgtggagcaGctggaagacaggatcctctg	13	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59752207	T	T	59752207	3	4	15	1	0	0	0	0	1	0	0	0	5681	962	34	3	102	3	FAM81A	15	59752207	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	9217509	59752207	42779185	1851	33501											
VPS13C	54832	broad.mit.edu	37	chr15	62325678	62325678	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagggcttcttcaattcggGatagctctttctgtttaaca	9	8	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62325678	A	A	62325678	3	1	15	1	0	0	0	0	1	0	0	0	17318	1174	41	4	11266	4	VPS13C	15	62325678	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2573471	62325678	40205714	1852	33502											
TPM1	7168	broad.mit.edu	37	chr15	63363340	63363340	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtatgcatcagatgctggAtcagactttactggagttaa	10	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63363340	T	T	63363340	3	4	15	1	0	0	0	0	1	0	0	0	16529	333	12	5	1377	5	TPM1	15	63363340	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1037662	63363340	39168052	1853	33503											
IGDCC3	9543	broad.mit.edu	37	chr15	65621517	65621517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccgtcacacaggcgtcaGcttgagggccagggcgccag	15	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65621517	T	T	65621517	1	4	15	0	1	0	0	0	0	0	0	0	7638	986	34	3		3	IGDCC3	15	65621517	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2258177	65621517	36909875	1854	33504											
C15orf44	81556	broad.mit.edu	37	chr15	65888105	65888105	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataggtaagaccagatgtctGgacagaactgggggacttga	14	6	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65888105	C	C	65888105	2	2	15	1	0	0	0	0	0	0	0	1	1811	1335	47	4		4	C15orf44	15	65888105	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	266588	65888105	36643287	1855	33505											
RPL4	6124	broad.mit.edu	37	chr15	66797088	66797088	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccttccttactggccccgaGatacggggtaaggccagcca	11	14	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66797088	C	C	66797088	1	2	15	0	1	0	0	0	0	0	0	0	13706	957	33	4		4	RPL4	15	66797088	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	908983	66797088	35734304	1856	33506											
SMAD3	4088	broad.mit.edu	37	chr15	67473677	67473677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacattccacgcctcgcagCcatccatgactgtggatggc	10	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67473677	T	T	67473677	3	4	15	1	0	0	0	0	1	0	0	0	14873	739	26	4	857	4	SMAD3	15	67473677	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	676589	67473677	35057715	1857	33507											
LARP6	55323	broad.mit.edu	37	chr15	71124586	71124586	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacccaggggctgccagaGggagtgacgctgctgtcaga	17	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71124586	T	T	71124586	2	4	15	1	0	0	0	0	0	0	0	1	8704	987	35	2		2	LARP6	15	71124586	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	3650909	71124586	31406806	1858	33508											
CELF6	60677	broad.mit.edu	37	chr15	72579804	72579804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttctctctgaccagccCcctcctcttccagccccgtc	4	22	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72579804	A	A	72579804	1	1	15	0	1	0	0	0	0	0	0	0	3250	638	22	2		2	CELF6	15	72579804	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1455218	72579804	29951588	1859	33509											
C15orf60	283677	broad.mit.edu	37	chr15	73852262	73852262	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtttgagaaattaatgctCtatatacatatataactaag	7	4	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73852262	A	A	73852262	1	1	15	0	1	0	0	0	0	0	0	0	1821	928	32	3		3	C15orf60	15	73852262	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	1272458	73852262	28679130	1860	33510											
TBC1D21	161514	broad.mit.edu	37	chr15	74179886	74179886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactccaggcacgtggttgGtgggtacctcaccatcctca	11	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74179886	T	T	74179886	1	4	15	0	1	0	0	0	0	0	0	0	15729	1276	44	3		3	TBC1D21	15	74179886	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	327624	74179886	28351506	1861	33511											
SGK269	79834	broad.mit.edu	37	chr15	77471194	77471194	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcttctctgagtcctgTagtaatgcattctctgctct	6	12	5	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77471194	C	C	77471194	2	2	15	1	0	0	0	0	0	0	0	1	14324	1625	57	5		5	SGK269	15	77471194	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	3291308	77471194	25060198	1862	33512											
IREB2	3658	broad.mit.edu	37	chr15	78786160	78786160	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgaaattttctgtgAtaaaaaaatttttcaatagg	7	2	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78786160	G	G	78786160	1	3	15	0	1	0	0	0	0	0	0	0	7896	348	12	5		5	IREB2	15	78786160	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1314966	78786160	23745232	1863	33513											
ARNT2	9915	broad.mit.edu	37	chr15	80886056	80886056	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagctgcggccagagtgagGctcctgctgtacagtgccac	14	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80886056	T	T	80886056	1	4	15	0	1	0	0	0	0	0	0	0	970	1218	42	3		3	ARNT2	15	80886056	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	2099896	80886056	21645336	1864	33514											
MEX3B	84206	broad.mit.edu	37	chr15	82336979	82336979	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaccagggtgcggaggaggGagtgggagagagagacagac	21	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82336979	C	C	82336979	1	2	15	0	1	0	0	0	0	0	0	0	9603	1189	41	4		4	MEX3B	15	82336979	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1450923	82336979	20194413	1865	33515											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84705802	84705802	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggcatcagatcctgatgCtaccatcacggcaccaaacc	8	14	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84705802	T	T	84705802	1	4	15	0	1	0	0	0	0	0	0	0	276	812	28	4		4	ADAMTSL3	15	84705802	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2368823	84705802	17825590	1866	33516											
ALPK3	57538	broad.mit.edu	37	chr15	85360091	85360091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcactaatggaggtggcttGgcttgtctatgtgctgggcc	15	8	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85360091	T	T	85360091	3	4	15	1	0	0	0	0	1	0	0	0	546	1357	47	2	16	2	ALPK3	15	85360091	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	654289	85360091	17171301	1867	33517											
AGBL1	123624	broad.mit.edu	37	chr15	87089343	87089343	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgtgggcacatctactatCctagaggaggtcaactacag	10	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87089343	A	A	87089343	2	1	15	1	0	0	0	0	0	0	0	1	375	845	30	3		3	AGBL1	15	87089343	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	1729252	87089343	15442049	1868	33518											
FANCI	55215	broad.mit.edu	37	chr15	89821877	89821877	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatatacttaaaagctgaAgggtcacccaggaatatttt	8	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89821877	T	T	89821877	1	4	15	0	1	0	0	0	0	0	0	0	5726	87	3	5		5	FANCI	15	89821877	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	2732534	89821877	12709515	1869	33519											
KIF7	374654	broad.mit.edu	37	chr15	90172699	90172699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggcgctgccgctccaGggccacctccagccagtaca	10	19	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90172699	T	T	90172699	3	4	15	1	0	0	0	0	1	0	0	0	8379	991	35	2	619	2	KIF7	15	90172699	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	350822	90172699	12358693	1870	33520											
CRTC3	64784	broad.mit.edu	37	chr15	91172586	91172586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcatctgctcttcacccttCgctccgtctgttttccctta	5	17	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91172586	T	T	91172586	3	4	15	1	0	0	0	0	1	0	0	0	3933	893	31	4	1130	4	CRTC3	15	91172586	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	999887	91172586	11358806	1871	33521											
RGS11	8786	broad.mit.edu	37	chr16	325382	325382	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgaggcgcgcacgcaccCccgccccggcgcgcctcacc	13	23	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	325382	T	T	325382	1	4	15	0	1	0	0	0	0	0	0	0	13403	638	22	4		4	RGS11	16	325382	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08		325382	90029371	1872	33522											
AXIN1	8312	broad.mit.edu	37	chr16	396193	396193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctactggaggagaccctcGgggcagctgtctccaggagc	15	12	2	1	rs147515329		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	396193	T	T	396193	3	4	15	1	0	0	0	0	1	0	0	0	1241	1116	39	1	1795	1	AXIN1	16	396193	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	70811	396193	89958560	1873	33523											
CLCN7	1186	broad.mit.edu	37	chr16	1504333	1504333	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctccagggagccacagcctCcagtcctcgtctctatggcc	10	17	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1504333	A	A	1504333	1	1	15	0	1	0	0	0	0	0	0	0	3499	870	30	3		3	CLCN7	16	1504333	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1108140	1504333	88850420	1874	33524											
PKD1	5310	broad.mit.edu	37	chr16	2160773	2160773	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgctggtgaccagcacGggctcctgcacctccaccag	11	15	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2160773	A	A	2160773	2	1	15	1	0	0	0	0	0	0	0	1	12058	1103	39	4		4	PKD1	16	2160773	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	656440	2160773	88193980	1875	33525											
CCNF	899	broad.mit.edu	37	chr16	2506488	2506488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtcctgacctggcaggGggtctcccctgatgcttggg	16	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2506488	T	T	2506488	1	4	15	0	1	0	0	0	0	0	0	0	2952	1247	43	2		2	CCNF	16	2506488	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	345715	2506488	87848265	1876	33526											
C16orf59	80178	broad.mit.edu	37	chr16	2511049	2511049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacccaccaagggcctccgCcagaccacggtgcctgccaa	10	18	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2511049	A	A	2511049	2	1	15	1	0	0	0	0	0	0	0	1	1837	726	26	3		3	C16orf59	16	2511049	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	4561	2511049	87843704	1877	33527											
PRSS21	10942	broad.mit.edu	37	chr16	2870830	2870830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctgggttggagctgggGgtaatggagatgaacctgcc	19	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2870830	T	T	2870830	1	4	15	0	1	0	0	0	0	0	0	0	12724	1247	43	2		2	PRSS21	16	2870830	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	359781	2870830	87483923	1878	33528											
UBN1	29855	broad.mit.edu	37	chr16	4921032	4921032	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcagtgtctgagcacGtcccctattgctgacaaagg	14	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4921032	C	C	4921032	1	2	15	0	1	0	0	0	0	0	0	0	17018	1160	40	4		4	UBN1	16	4921032	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2050202	4921032	85433721	1879	33529											
GRIN2A	2903	broad.mit.edu	37	chr16	9934562	9934562	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccatgacactgattccCgtttccacaaagggcacaga	8	12	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9934562	A	A	9934562	2	1	15	1	0	0	0	0	0	0	0	1	6845	639	23	1		1	GRIN2A	16	9934562	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	5013530	9934562	80420191	1880	33530											
GRIN2A	2903	broad.mit.edu	37	chr16	9943758	9943758	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggctcacagtcggagaaggActtgtacctgggccacacgg	14	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9943758	T	T	9943758	3	4	15	1	0	0	0	0	1	0	0	0	6845	275	10	5	3247	5	GRIN2A	16	9943758	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	9196	9943758	80410995	1881	33531											
ZC3H7A	29066	broad.mit.edu	37	chr16	11846493	11846493	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaatttgaggtcagcaattCtgacatggaaaaattgtaga	9	4	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11846493	G	G	11846493	1	3	15	0	1	0	0	0	0	0	0	0	17698	928	32	4		4	ZC3H7A	16	11846493	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1902735	11846493	78508260	1882	33532											
CPPED1	55313	broad.mit.edu	37	chr16	12875245	12875245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtagaatgggcctttcCattcgctttccttttcttaa	7	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12875245	A	A	12875245	3	1	15	1	0	0	0	0	1	0	0	0	3854	595	21	2	870	2	CPPED1	16	12875245	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1028752	12875245	77479508	1883	33533											
PDXDC1	23042	broad.mit.edu	37	chr16	15111246	15111246	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgccagctgttcctgcGgtgacactgtataaacacga	11	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15111246	T	T	15111246	2	4	15	1	0	0	0	0	0	0	0	1	11790	1103	39	1		1	PDXDC1	16	15111246	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2236001	15111246	75243507	1884	33534											
PDXDC1	23042	broad.mit.edu	37	chr16	15222081	15222081	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagggtccgcacagacctTtgtcgtgccacactcggatc	12	14	0	1	rs66756228		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15222081	A	A	15222081	1	1	15	0	1	0	0	0	0	0	0	0	11790	1856	64	5		5	PDXDC1	16	15222081	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	110835	15222081	75132672	1885	33535											
ABCC1	4363	broad.mit.edu	37	chr16	16162136	16162136	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctgaacattctccccAtggtcatcagcagcatcgtg	7	15	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16162136	G	G	16162136	3	3	15	1	0	0	0	0	1	0	0	0	49	217	8	5	1851	5	ABCC1	16	16162136	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	940055	16162136	74192617	1886	33536											
CP110	9738	broad.mit.edu	37	chr16	19548650	19548650	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaaacccttctcctttAttgatgcaaaaccagaatac	4	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19548650	T	T	19548650	3	4	15	1	0	0	0	0	1	0	0	0	3820	446	16	5	1669	5	CP110	16	19548650	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	3386514	19548650	70806103	1887	33537											
GPR139	124274	broad.mit.edu	37	chr16	20043588	20043588	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggacgtgatgcacagaGgtgctgatgtagtcttcagt	14	6	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043588	T	T	20043588	2	4	15	1	0	0	0	0	0	0	0	1	6713	987	35	2		2	GPR139	16	20043588	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	494938	20043588	70311165	1888	33538											
ACSM5	54988	broad.mit.edu	37	chr16	20430531	20430531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgctatccactcaacatcCccttctgttttatgccaggg	6	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20430531	A	A	20430531	1	1	15	0	1	0	0	0	0	0	0	0	187	638	22	2		2	ACSM5	16	20430531	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	386943	20430531	69924222	1889	33539											
ACSM5	54988	broad.mit.edu	37	chr16	20451364	20451364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagaaacttgtaaccctGgctgctgcttcagctttttt	9	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20451364	T	T	20451364	1	4	15	0	1	0	0	0	0	0	0	0	187	1363	47	2		2	ACSM5	16	20451364	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	20833	20451364	69903389	1890	33540											
ACSM2A	123876	broad.mit.edu	37	chr16	20471317	20471317	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactcataactacagcaaatTaattcctgggaagaatccta	5	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20471317	A	A	20471317	1	1	15	0	1	0	0	0	0	0	0	0	183	1769	61	5		5	ACSM2A	16	20471317	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	19953	20471317	69883436	1891	33541											
ACSM2A	123876	broad.mit.edu	37	chr16	20491921	20491921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgacaagacagcagccaaCattcgaggagacttttggct	10	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20491921	A	A	20491921	3	1	15	1	0	0	0	0	1	0	0	0	183	477	17	3	1346	3	ACSM2A	16	20491921	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	20604	20491921	69862832	1892	33542											
ACSM2B	348158	broad.mit.edu	37	chr16	20554314	20554314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcagtgcattctctacCtccgagggtccaatccggta	8	13	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20554314	A	A	20554314	3	1	15	1	0	0	0	0	1	0	0	0	184	680	24	2	314	2	ACSM2B	16	20554314	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	62393	20554314	69800439	1893	33543											
DNAH3	55567	broad.mit.edu	37	chr16	20952875	20952875	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccacttccttaaaatgCaggcagaagagaggtgagtg	11	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20952875	T	T	20952875	1	4	15	0	1	0	0	0	0	0	0	0	4643	725	25	4		4	DNAH3	16	20952875	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	398561	20952875	69401878	1894	33544											
DNAH3	55567	broad.mit.edu	37	chr16	21049074	21049074	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggccaaggtcctgaaccGctacatacctgaaacagagg	10	13	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21049074	T	T	21049074	1	4	15	0	1	0	0	0	0	0	0	0	4643	1102	38	3		3	DNAH3	16	21049074	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	96199	21049074	69305679	1895	33545											
DNAH3	55567	broad.mit.edu	37	chr16	21073886	21073886	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccacaatttccagattgtCtgtaaactcaagcttggcaa	7	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21073886	T	T	21073886	3	4	15	1	0	0	0	0	1	0	0	0	4643	913	32	4	8864	4	DNAH3	16	21073886	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	24812	21073886	69280867	1896	33546											
UQCRC2	7385	broad.mit.edu	37	chr16	21974222	21974222	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactcgtaagtacatttccaGatcacatttgattctaagat	6	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21974222	A	A	21974222	1	1	15	0	1	0	0	0	0	0	0	0	17146	957	33	4		4	UQCRC2	16	21974222	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	900336	21974222	68380531	1897	33547											
VWA3A	146177	broad.mit.edu	37	chr16	22152985	22152985	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagagacatctcttttactGttctacacagagaaagggaa	9	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22152985	C	C	22152985	2	2	15	1	0	0	0	0	0	0	0	1	17367	1364	48	4		4	VWA3A	16	22152985	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	178763	22152985	68201768	1898	33548											
GGA2	23062	broad.mit.edu	37	chr16	23499847	23499847	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacctgcccccctccatacTccgattcaagcatcaaaggg	6	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23499847	C	C	23499847	1	2	15	0	1	0	0	0	0	0	0	0	6417	1566	54	5		5	GGA2	16	23499847	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1346862	23499847	66854906	1899	33549											
AQP8	343	broad.mit.edu	37	chr16	25232973	25232973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggtgcatatgtgggtGtgtgtgtgggacagtgggga	21	3	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25232973	T	T	25232973	1	4	15	0	1	0	0	0	0	0	0	0	834	1392	48	3		3	AQP8	16	25232973	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1733126	25232973	65121780	1900	33550											
IL4R	3566	broad.mit.edu	37	chr16	27374420	27374420	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagtttgtacatgcggtgGagcagggtggcacccaggcc	17	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27374420	A	A	27374420	3	1	15	1	0	0	0	0	1	0	0	0	7768	1175	41	4	1799	4	IL4R	16	27374420	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2141447	27374420	62980333	1901	33551											
GTF3C1	2975	broad.mit.edu	37	chr16	27474767	27474767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtcagagctggtacctGgggaaagaccctcaaagacc	13	11	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27474767	T	T	27474767	1	4	15	0	1	0	0	0	0	0	0	0	6937	1363	47	2		2	GTF3C1	16	27474767	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	100347	27474767	62879986	1902	33552											
GTF3C1	2975	broad.mit.edu	37	chr16	27517400	27517401	+	Frame_Shift_Ins	INS	-	T	T													ctgggaaggagggcggctgcINStttttcaatgggtgtaggtt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27517401	T	T	27517400	7	5	15	1	0	1	1	0	0	0	0	0	6937	796	28	0	4851	0	GTF3C1	16	27517400	Frame_Shift_Ins	INS	-	TCGA-05-4410-01A-21D-1855-08	42633	27517400	62837353	1903	33553											
XPO6	23214	broad.mit.edu	37	chr16	28110024	28110024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacccaccagaccccaaCagctacttccatcccagagt	4	20	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28110024	A	A	28110024	1	1	15	0	1	0	0	0	0	0	0	0	17575	493	17	3		3	XPO6	16	28110024	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	592624	28110024	62244729	1904	33554											
ATP2A1	487	broad.mit.edu	37	chr16	28905841	28905841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcttgaagaatgataaGccagtccggccagggcagta	13	10	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28905841	T	T	28905841	3	4	15	1	0	0	0	0	1	0	0	0	1140	962	34	3	1242	3	ATP2A1	16	28905841	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	795817	28905841	61448912	1905	33555											
CD19	930	broad.mit.edu	37	chr16	28946891	28946891	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaggtgagtcatgtccccAgtgggtctgtccaaacccta	11	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28946891	C	C	28946891	1	2	15	0	1	0	0	0	0	0	0	0	3003	203	7	5		5	CD19	16	28946891	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	41050	28946891	61407862	1906	33556											
SEPT1	1731	broad.mit.edu	37	chr16	30392511	30392511	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttgccaatgactgggatGatgttgactttctcgtgtac	11	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30392511	T	T	30392511	2	4	15	1	0	0	0	0	0	0	0	1	14172	1280	45	3		3	SEPT1	16	30392511	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1445620	30392511	59962242	1907	33557											
ITGAL	3683	broad.mit.edu	37	chr16	30495236	30495236	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggggaggccactgacagtGgcaacatcgatgcggccaaa	14	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30495236	A	A	30495236	3	1	15	1	0	0	0	0	1	0	0	0	7956	1348	47	4	841	4	ITGAL	16	30495236	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	102725	30495236	59859517	1908	33558											
SRCAP	10847	broad.mit.edu	37	chr16	30723384	30723384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgggcctcctactccagGgcccactactctaggtccaa	9	16	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30723384	T	T	30723384	3	4	15	1	0	0	0	0	1	0	0	0	15253	1232	43	2	1759	2	SRCAP	16	30723384	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	228148	30723384	59631369	1909	33559											
SRCAP	10847	broad.mit.edu	37	chr16	30748500	30748501	+	Missense_Mutation	DNP	GG	TT	TT													gactggtggaggcacccaccGgcgcagtaaaaaggccaaag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30748501	TT	TT	30748500	3	4	15	1	0	0	0	0	1	0	0	0	15253	1116	39	1	7265	1	SRCAP	16	30748500	Missense_Mutation	DNP	GG	TCGA-05-4410-01A-21D-1855-08	25116	30748500	59606253	1910	33560											
STX4	6810	broad.mit.edu	37	chr16	31046343	31046343	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactataactccgtcaacacAagaatgagaaaaacccaggt	6	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31046343	C	C	31046343	2	2	15	1	0	0	0	0	0	0	0	1	15465	117	5	5		5	STX4	16	31046343	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	297843	31046343	59308410	1911	33561											
ITGAX	3687	broad.mit.edu	37	chr16	31372376	31372376	+	Intron	DEL	G	-	-													ttactgagttgatcttttctGgggacaggttggattagctt							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31372376	-	-	31372376	6	5	15	0	1	1	0	1	0	0	0	0	7959	1363	47	0		0	ITGAX	16	31372376	Intron	DEL	G	TCGA-05-4410-01A-21D-1855-08	326033	31372376	58982377	1912	33562											
ITGAX	3687	broad.mit.edu	37	chr16	31388578	31388578	+	Frame_Shift_Del	DEL	G	-	-													aagtatgctgtctacactgtGgttagcaggtcagcaggtac							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31388578	-	-	31388578	7	5	15	1	0	1	0	1	0	0	0	0	7959	1335	47	0	2871	0	ITGAX	16	31388578	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	16202	31388578	58966175	1913	33563											
ITGAX	3687	broad.mit.edu	37	chr16	31392968	31392968	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaagaaaataattttgGctaaatctagatgacatgat	6	4	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31392968	A	A	31392968	1	1	15	0	1	0	0	0	0	0	0	0	7959	1218	42	4		4	ITGAX	16	31392968	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	4390	31392968	58961785	1914	33564											
ITGAD	3681	broad.mit.edu	37	chr16	31435572	31435572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggaaagaggacccctaGggctacatctgtggtgctgg	15	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31435572	T	T	31435572	1	4	15	0	1	0	0	0	0	0	0	0	7954	1015	35	2		2	ITGAD	16	31435572	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	42604	31435572	58919181	1915	33565											
TGFB1I1	7041	broad.mit.edu	37	chr16	31485036	31485036	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtcttcaggagcctcggggGacaaggaccacctgtacagg	14	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31485036	A	A	31485036	3	1	15	1	0	0	0	0	1	0	0	0	15940	1174	41	4	173	4	TGFB1I1	16	31485036	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	49464	31485036	58869717	1916	33566											
ZNF267	10308	broad.mit.edu	37	chr16	31906327	31906327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaaaatatgaaactgcGtctggctgtgaaggggagcc	13	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31906327	T	T	31906327	1	4	15	0	1	0	0	0	0	0	0	0	17932	1160	40	3		3	ZNF267	16	31906327	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	421291	31906327	58448426	1917	33567											
NETO2	81831	broad.mit.edu	37	chr16	47117419	47117419	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtggatgcagcgggaggCggtggaggagcgccgcatct	20	9	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47117419	T	T	47117419	3	4	15	1	0	0	0	0	1	0	0	0	10435	768	27	4	290	4	NETO2	16	47117419	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	15211092	47117419	43237334	1918	33568											
ABCC12	94160	broad.mit.edu	37	chr16	48117856	48117856	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaggacgtgatcgcagttGagaactgtgttgaggcggtg	16	7	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48117856	T	T	48117856	2	4	15	1	0	0	0	0	0	0	0	1	52	1277	45	3		3	ABCC12	16	48117856	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1000437	48117856	42236897	1919	33569											
N4BP1	9683	broad.mit.edu	37	chr16	48576960	48576960	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgttggtttctgcagaagatCtctgagctggcatgggcagg	15	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48576960	A	A	48576960	3	1	15	1	0	0	0	0	1	0	0	0	10203	913	32	3	148	3	N4BP1	16	48576960	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	459104	48576960	41777793	1920	33570											
C16orf78	123970	broad.mit.edu	37	chr16	49407973	49407973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagtggctggagcggagGcaggggaagaagaaacaagc	19	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49407973	T	T	49407973	3	4	15	1	0	0	0	0	1	0	0	0	1849	1194	42	3	125	3	C16orf78	16	49407973	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	831013	49407973	40946780	1921	33571											
ZNF423	23090	broad.mit.edu	37	chr16	49660022	49660022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaaatgatgattggaacCgcaaatttaaaaccccaaag	7	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49660022	A	A	49660022	1	1	15	0	1	0	0	0	0	0	0	0	18025	667	23	1		1	ZNF423	16	49660022	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	252049	49660022	40694731	1922	33572											
ADCY7	113	broad.mit.edu	37	chr16	50338319	50338319	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acctccccaggcccaaggggGacgcggccctgaagatgcgg	15	15	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50338319	C	C	50338319	3	2	15	1	0	0	0	0	1	0	0	0	299	1174	41	4	1455	4	ADCY7	16	50338319	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	678297	50338319	40016434	1923	33573											
BRD7	29117	broad.mit.edu	37	chr16	50374056	50374056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaactaccctgcaccCccaggttgaaaatatacagg	6	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50374056	A	A	50374056	1	1	15	0	1	0	0	0	0	0	0	0	1514	638	22	2		2	BRD7	16	50374056	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	35737	50374056	39980697	1924	33574											
CES1	1066	broad.mit.edu	37	chr16	55844395	55844395	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatacagaagctcgtggggTttgtgtccctcccgttcgac	12	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55844395	A	A	55844395	1	1	15	0	1	0	0	0	0	0	0	0	3299	1740	60	5		5	CES1	16	55844395	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	5470339	55844395	34510358	1925	33575											
MT1B	4490	broad.mit.edu	37	chr16	56685902	56685902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaccacaggtaagggaCgcctggctctgggccttgag	14	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56685902	A	A	56685902	1	1	15	0	1	0	0	0	0	0	0	0	9992	551	19	3		3	MT1B	16	56685902	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	841507	56685902	33668851	1926	33576											
SLC12A3	6559	broad.mit.edu	37	chr16	56936384	56936384	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggcgggactgcccctggaaGatctcagatgaggagattac	14	10	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56936384	C	C	56936384	3	2	15	1	0	0	0	0	1	0	0	0	14497	933	33	4	2941	4	SLC12A3	16	56936384	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	250482	56936384	33418369	1927	33577											
COQ9	57017	broad.mit.edu	37	chr16	57486813	57486813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtttgtgcccgcccacGggtggacagcagaggcgatt	15	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57486813	T	T	57486813	3	4	15	1	0	0	0	0	1	0	0	0	3783	1116	39	1	353	1	COQ9	16	57486813	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	550429	57486813	32867940	1928	33578											
GPR97	222487	broad.mit.edu	37	chr16	57712138	57712138	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgacagagtgcgacttccCaagagcctttttcgatccct	8	14	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57712138	A	A	57712138	2	1	15	1	0	0	0	0	0	0	0	1	6786	581	21	2		2	GPR97	16	57712138	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	225325	57712138	32642615	1929	33579											
CNOT1	23019	broad.mit.edu	37	chr16	58590676	58590676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcaacacatggccctaCtaacacaaatgagacataca	4	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58590676	A	A	58590676	1	1	15	0	1	0	0	0	0	0	0	0	3649	580	20	3		3	CNOT1	16	58590676	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	878538	58590676	31764077	1930	33580											
GOT2	2806	broad.mit.edu	37	chr16	58756015	58756015	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataattacaaatttgttaAaacagacctgggatgatgcc	7	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58756015	C	C	58756015	1	2	15	0	1	0	0	0	0	0	0	0	6645	29	1	5		5	GOT2	16	58756015	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	165339	58756015	31598738	1931	33581											
CDH8	1006	broad.mit.edu	37	chr16	61689333	61689333	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttacagtcatttatgaatCagaaaaagggtgaccggtag	10	5	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61689333	A	A	61689333	1	1	15	0	1	0	0	0	0	0	0	0	3146	841	29	3		3	CDH8	16	61689333	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2933318	61689333	28665420	1932	33582											
CDH8	1006	broad.mit.edu	37	chr16	61747894	61747894	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttgacgtcagcatttctGatgatttcagaggctcctgc	9	10	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61747894	T	T	61747894	1	4	15	0	1	0	0	0	0	0	0	0	3146	1305	45	3		3	CDH8	16	61747894	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	58561	61747894	28606859	1933	33583											
CDH8	1006	broad.mit.edu	37	chr16	61858985	61858985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtcgtggtcccagacaGgccaccagagtgtccaccca	11	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61858985	T	T	61858985	3	4	15	1	0	0	0	0	1	0	0	0	3146	991	35	2	1665	2	CDH8	16	61858985	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	111091	61858985	28495768	1934	33584											
CDH11	1009	broad.mit.edu	37	chr16	64982668	64982668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcttccctgggagagggGggttccattaagcttgggca	15	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64982668	T	T	64982668	1	4	15	0	1	0	0	0	0	0	0	0	3127	1247	43	2		2	CDH11	16	64982668	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3123683	64982668	25372085	1935	33585											
CDH11	1009	broad.mit.edu	37	chr16	64984694	64984694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatgacgatgcaggcgaGgatggcgatcagggcgcctg	18	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64984694	T	T	64984694	3	4	15	1	0	0	0	0	1	0	0	0	3127	1000	35	2	528	2	CDH11	16	64984694	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2026	64984694	25370059	1936	33586											
CES2	8824	broad.mit.edu	37	chr16	66975441	66975441	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccccggagtggtggatggGgtcttcctgcccaggcaccc	14	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66975441	T	T	66975441	2	4	15	1	0	0	0	0	0	0	0	1	3300	1219	43	2		2	CES2	16	66975441	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1990747	66975441	23379312	1937	33587											
KCTD19	146212	broad.mit.edu	37	chr16	67354439	67354439	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaggaaacaatatttagtGatgtaaagccatgttactga	8	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67354439	A	A	67354439	1	1	15	0	1	0	0	0	0	0	0	0	8176	1305	45	4		4	KCTD19	16	67354439	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	378998	67354439	23000314	1938	33588											
FAM65A	79567	broad.mit.edu	37	chr16	67576776	67576776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctccaaacactcagaccCcaccctcccaggcactgact	4	22	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67576776	A	A	67576776	3	1	15	1	0	0	0	0	1	0	0	0	5650	623	22	2	2133	2	FAM65A	16	67576776	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	222337	67576776	22777977	1939	33589											
EDC4	23644	broad.mit.edu	37	chr16	67915484	67915484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaacttcaccctgggcgGgtggagaagggctctgggcc	18	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67915484	T	T	67915484	1	4	15	0	1	0	0	0	0	0	0	0	4948	1247	43	2		2	EDC4	16	67915484	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	338708	67915484	22439269	1940	33590											
NFATC3	4775	broad.mit.edu	37	chr16	68156594	68156594	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcatcaaggcccacatccCcctgtgggaaacggaggcac	10	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68156594	T	T	68156594	3	4	15	1	0	0	0	0	1	0	0	0	10459	623	22	4	814	4	NFATC3	16	68156594	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	241110	68156594	22198159	1941	33591											
ZFP90	146198	broad.mit.edu	37	chr16	68597462	68597462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaacaccatgaatgtaccGactgtgggaaaacctttctc	8	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68597462	T	T	68597462	3	4	15	1	0	0	0	0	1	0	0	0	17780	1058	37	3	786	3	ZFP90	16	68597462	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	440868	68597462	21757291	1942	33592											
CDH1	999	broad.mit.edu	37	chr16	68867467	68867467	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaatcacgttgctggtgGtttttcagctcccttccctt	8	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68867467	T	T	68867467	1	4	15	0	1	0	0	0	0	0	0	0	3125	1276	44	3		3	CDH1	16	68867467	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	270005	68867467	21487286	1943	33593											
PDPR	55066	broad.mit.edu	37	chr16	70154664	70154664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcatggctgtgctgcactAatcgtataagattccctctc	8	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70154664	G	G	70154664	1	3	15	0	1	0	0	0	0	0	0	0	11783	377	13	5		5	PDPR	16	70154664	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1287197	70154664	20200089	1944	33594											
SF3B3	23450	broad.mit.edu	37	chr16	70560648	70560648	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtaagttctctcgttaccAtcttttgaaattttaagtga	7	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70560648	G	G	70560648	1	3	15	0	1	0	0	0	0	0	0	0	14265	232	8	5		5	SF3B3	16	70560648	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	405984	70560648	19794105	1945	33595											
SF3B3	23450	broad.mit.edu	37	chr16	70595652	70595652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcctcggaacagtgtccCgagggcattgtggccatctc	12	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70595652	A	A	70595652	2	1	15	1	0	0	0	0	0	0	0	1	14265	639	23	1		1	SF3B3	16	70595652	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	35004	70595652	19759101	1946	33596											
PHLPP2	23035	broad.mit.edu	37	chr16	71732163	71732163	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actggggatgtaactgacccCgcagccatctgggatgagct	13	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71732163	G	G	71732163	1	3	15	0	1	0	0	0	0	0	0	0	11950	667	23	4		4	PHLPP2	16	71732163	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1136511	71732163	18622590	1947	33597											
AP1G1	164	broad.mit.edu	37	chr16	71779116	71779116	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggtttgcttgtaggcgCagttggaataacaggtgtta	14	4	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71779116	T	T	71779116	3	4	15	1	0	0	0	0	1	0	0	0	734	710	25	4	558	4	AP1G1	16	71779116	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	46953	71779116	18575637	1948	33598											
KIAA0174	9798	broad.mit.edu	37	chr16	71961559	71961559	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgcaaagcttccttccaGacctgcagataactatgaca	6	13	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71961559	T	T	71961559	3	4	15	1	0	0	0	0	1	0	0	0	8228	942	33	3	974	3	KIAA0174	16	71961559	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	182443	71961559	18393194	1949	33599											
DHX38	9785	broad.mit.edu	37	chr16	72142863	72142864	+	Intron	INS	-	T	T													cttgcataatgcaggcccccINStgtctggccaggctttgaaa							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72142864	T	T	72142863	6	5	15	0	1	1	1	0	0	0	0	0	4551	696	24	0		0	DHX38	16	72142863	Intron	INS	-	TCGA-05-4410-01A-21D-1855-08	181304	72142863	18211890	1950	33600											
PSMD7	5713	broad.mit.edu	37	chr16	74338330	74338330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaaaatcattcactgccCgagaggtcacacagtgtaag	8	11	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74338330	A	A	74338330	1	1	15	0	1	0	0	0	0	0	0	0	12809	667	23	1		1	PSMD7	16	74338330	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2195467	74338330	16016423	1951	33601											
RFWD3	55159	broad.mit.edu	37	chr16	74678502	74678502	+	Frame_Shift_Del	DEL	C	-	-													cacctatacccaaagagatgCccacagcgtaatgctgagag							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74678502	-	-	74678502	7	5	15	1	0	1	0	1	0	0	0	0	13369	726	26	0	1436	0	RFWD3	16	74678502	Frame_Shift_Del	DEL	C	TCGA-05-4410-01A-21D-1855-08	340172	74678502	15676251	1952	33602											
CNTNAP4	85445	broad.mit.edu	37	chr16	76350378	76350378	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagttcttccgagctctccAgcagtcatggtcctggattt	10	12	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76350378	T	T	76350378	3	4	15	1	0	0	0	0	1	0	0	0	3681	188	7	5	173	5	CNTNAP4	16	76350378	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1671876	76350378	14004375	1953	33603											
CNTNAP4	85445	broad.mit.edu	37	chr16	76482812	76482812	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcatcatttccatgcAcggggagaattcaatctcat	8	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76482812	G	G	76482812	2	3	15	1	0	0	0	0	0	0	0	1	3681	146	6	5		5	CNTNAP4	16	76482812	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	132434	76482812	13871941	1954	33604											
CNTNAP4	85445	broad.mit.edu	37	chr16	76569506	76569506	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctgcagttgaatgggatGaccctggatttggaagaaag	13	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76569506	T	T	76569506	3	4	15	1	0	0	0	0	1	0	0	0	3681	1290	45	3	2903	3	CNTNAP4	16	76569506	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	86694	76569506	13785247	1955	33605											
CLEC3A	10143	broad.mit.edu	37	chr16	78064691	78064691	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtggagtgatgaggccTgtcgcagcagcaagagatac	15	8	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78064691	C	C	78064691	3	2	15	1	0	0	0	0	1	0	0	0	3542	1580	55	5	557	5	CLEC3A	16	78064691	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1495185	78064691	12290062	1956	33606											
DYNLRB2	83657	broad.mit.edu	37	chr16	80583453	80583453	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttcatcacctgacaaTgaaagccaaaagcacagttc	5	13	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80583453	C	C	80583453	3	2	15	1	0	0	0	0	1	0	0	0	4891	1464	51	5	162	5	DYNLRB2	16	80583453	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	2518762	80583453	9771300	1957	33607											
C16orf46	123775	broad.mit.edu	37	chr16	81097426	81097426	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgtaatgtcactgacatcGagaagacaataaacatgatt	8	7	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81097426	A	A	81097426	2	1	15	1	0	0	0	0	0	0	0	1	1829	1045	37	4		4	C16orf46	16	81097426	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	513973	81097426	9257327	1958	33608											
PKD1L2	114780	broad.mit.edu	37	chr16	81248838	81248838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacattaggggggctcacGgttacagacaggtgagtgcc	15	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81248838	T	T	81248838	1	4	15	0	1	0	0	0	0	0	0	0	12060	1131	39	1		1	PKD1L2	16	81248838	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	151412	81248838	9105915	1959	33609											
SLC38A8	146167	broad.mit.edu	37	chr16	84070307	84070307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcccatgaaggtacttacGcttctccagctggtccccga	9	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84070307	T	T	84070307	3	4	15	1	0	0	0	0	1	0	0	0	14724	1101	38	3	955	3	SLC38A8	16	84070307	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2821469	84070307	6284446	1960	33610											
USP10	9100	broad.mit.edu	37	chr16	84774032	84774032	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggccatacgtgctgggtgGgcaggctacctgtaaacatt	13	9	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84774032	C	C	84774032	1	2	15	0	1	0	0	0	0	0	0	0	17167	1247	43	4		4	USP10	16	84774032	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	703725	84774032	5580721	1961	33611											
KIAA0513	9764	broad.mit.edu	37	chr16	85109450	85109450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccttgcctcttgtttcagGtgtcatcagatggatgactt	10	9	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85109450	T	T	85109450	3	4	15	1	0	0	0	0	1	0	0	0	8251	1275	44	3	518	3	KIAA0513	16	85109450	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	335418	85109450	5245303	1962	33612											
GINS2	51659	broad.mit.edu	37	chr16	85715101	85715101	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactgaggcaataagcagGgaagcggagaggaaggacga	16	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85715101	T	T	85715101	1	4	15	0	1	0	0	0	0	0	0	0	6452	1247	43	2		2	GINS2	16	85715101	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	605651	85715101	4639652	1963	33613											
ZCCHC14	23174	broad.mit.edu	37	chr16	87500789	87500789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgctttctcctctggcGggagaagactattcttcctt	9	11	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87500789	T	T	87500789	1	4	15	0	1	0	0	0	0	0	0	0	17709	1131	39	1		1	ZCCHC14	16	87500789	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1785688	87500789	2853964	1964	33614											
ACSF3	197322	broad.mit.edu	37	chr16	89212551	89212551	+	Intron	DEL	G	-	-													ttggcatcgtccgtcttagaGgtggagatgagggatcaaga							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89212551	-	-	89212551	6	5	15	0	1	1	0	1	0	0	0	0	176	1015	35	0		0	ACSF3	16	89212551	Intron	DEL	G	TCGA-05-4410-01A-21D-1855-08	1711762	89212551	1142202	1965	33615											
CPNE7	27132	broad.mit.edu	37	chr16	89651113	89651113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgagccctgggaaacgaCaaagccagctcccatccaaa	9	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89651113	A	A	89651113	1	1	15	0	1	0	0	0	0	0	0	0	3849	493	17	3		3	CPNE7	16	89651113	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	438562	89651113	703640	1966	33616											
FANCA	2175	broad.mit.edu	37	chr16	89831493	89831493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgaaacagagagtgaccCggccgtttcttcattgcgca	10	11	2	3	rs17233225		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89831493	A	A	89831493	1	1	15	0	1	0	0	0	0	0	0	0	5719	667	23	1		1	FANCA	16	89831493	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	180380	89831493	523260	1967	33617											
SPIRE2	84501	broad.mit.edu	37	chr16	89911689	89911689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtttattggggtcccGgggatgctgacaaataactt	13	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89911689	T	T	89911689	1	4	15	0	1	0	0	0	0	0	0	0	15190	1131	39	1		1	SPIRE2	16	89911689	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	80196	89911689	443064	1968	33618											
CRK	1398	broad.mit.edu	37	chr17	1326950	1326950	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccagctcaccgacctgcaGgaggagaataaggagagcac	12	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1326950	A	A	1326950	1	1	15	0	1	0	0	0	0	0	0	0	3916	1015	35	4		4	CRK	17	1326950	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08		1326950	79868260	1969	33619											
PRPF8	10594	broad.mit.edu	37	chr17	1578503	1578503	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcggctatgttgtggtcCacgatgaggcgcagcagcct	14	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1578503	A	A	1578503	2	1	15	1	0	0	0	0	0	0	0	1	12681	581	21	2		2	PRPF8	17	1578503	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	251553	1578503	79616707	1970	33620											
OR3A1	4994	broad.mit.edu	37	chr17	3195709	3195709	+	Frame_Shift_Del	DEL	G	-	-													tacatgggggtgtggagtttGggctccaccaagacagctgc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3195709	-	-	3195709	7	5	15	1	0	1	0	1	0	0	0	0	11131	1335	47	0	783	0	OR3A1	17	3195709	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	1617206	3195709	77999501	1971	33621											
ZZEF1	23140	broad.mit.edu	37	chr17	4008083	4008083	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagccagaagagtcagttCtacctctggggtagaacagc	11	9	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4008083	A	A	4008083	4	1	15	1	0	0	0	0	0	1	0	0	18384	922	32	3	7660	3	ZZEF1	17	4008083	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	812374	4008083	77187127	1972	33622											
ENO3	2027	broad.mit.edu	37	chr17	4856127	4856127	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccagtggggcttccacGggtatctatgaggctctgga	15	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4856127	T	T	4856127	2	4	15	1	0	0	0	0	0	0	0	1	5165	1103	39	1		1	ENO3	17	4856127	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	848044	4856127	76339083	1973	33623											
KIF1C	10749	broad.mit.edu	37	chr17	4905591	4905591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggagacgctgttgatcGgacacacctcctggcttgtt	12	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4905591	T	T	4905591	1	4	15	0	1	0	0	0	0	0	0	0	8355	1131	39	1		1	KIF1C	17	4905591	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	49464	4905591	76289619	1974	33624											
FGF11	2256	broad.mit.edu	37	chr17	7344743	7344743	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccaagtgtaggaatgtttCtgggaacggagatgtcattt	13	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7344743	A	A	7344743	1	1	15	0	1	0	0	0	0	0	0	0	5897	928	32	3		3	FGF11	17	7344743	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2439152	7344743	73850467	1975	33625											
POLR2A	5430	broad.mit.edu	37	chr17	7416791	7416791	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcccccagctactcaccCacttccccaagttactcacc	2	22	2	0	rs112370068	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7416791	A	A	7416791	2	1	15	1	0	0	0	0	0	0	0	1	12309	581	21	2		2	POLR2A	17	7416791	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	72048	7416791	73778419	1976	33626											
TP53	7157	broad.mit.edu	37	chr17	7577096	7577096	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcttcctctgtgcgccggTctctcccaggacaggcacaa	9	16	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577096	A	A	7577096	3	1	15	1	0	0	0	0	1	0	0	0	16505	1667	58	5	444	5	TP53	17	7577096	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	160305	7577096	73618114	1977	33627											
CHD3	1107	broad.mit.edu	37	chr17	7796813	7796813	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagcaccctccggaccccCcgcccttccaccaccccctg	5	25	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7796813	T	T	7796813	3	4	15	1	0	0	0	0	1	0	0	0	3357	623	22	4	1018	4	CHD3	17	7796813	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	219717	7796813	73398397	1978	33628											
ODF4	146852	broad.mit.edu	37	chr17	8249255	8249255	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcccttgaataggttggtCctcatcattgcaaggaatga	10	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8249255	T	T	8249255	1	4	15	0	1	0	0	0	0	0	0	0	10928	870	30	4		4	ODF4	17	8249255	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	452442	8249255	72945955	1979	33629											
MFSD6L	162387	broad.mit.edu	37	chr17	8702181	8702181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggctggcccccaccgaGccgagcagggagccgatcag	15	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8702181	T	T	8702181	2	4	15	1	0	0	0	0	0	0	0	1	9629	958	34	3		3	MFSD6L	17	8702181	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	452926	8702181	72493029	1980	33630											
WDR16	146845	broad.mit.edu	37	chr17	9546502	9546502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttgcgatggaagtaccCatatacctcctgaagctgat	8	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9546502	A	A	9546502	3	1	15	1	0	0	0	0	1	0	0	0	17403	594	21	2	1904	2	WDR16	17	9546502	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	844321	9546502	71648708	1981	33631											
MYH4	4622	broad.mit.edu	37	chr17	10352302	10352302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcttttcaagagaagcaCatttggaattcacagcttct	7	8	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10352302	A	A	10352302	3	1	15	1	0	0	0	0	1	0	0	0	10131	478	17	3	1615	3	MYH4	17	10352302	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	805800	10352302	70842908	1982	33632											
MYH1	4619	broad.mit.edu	37	chr17	10411638	10411638	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtctggcctctagttatGttttatacattaggtaaaag	9	6	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10411638	C	C	10411638	1	2	15	0	1	0	0	0	0	0	0	0	10123	1392	48	4		4	MYH1	17	10411638	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	59336	10411638	70783572	1983	33633											
MYH2	4620	broad.mit.edu	37	chr17	10430130	10430130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctatggaggcagttacaCcttcattttactggatattt	9	8	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10430130	A	A	10430130	1	1	15	0	1	0	0	0	0	0	0	0	10129	522	18	3		3	MYH2	17	10430130	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	18492	10430130	70765080	1984	33634											
MYH2	4620	broad.mit.edu	37	chr17	10441144	10441144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgcacagctgctccagGctgttgaactaaataaatag	9	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10441144	T	T	10441144	3	4	15	1	0	0	0	0	1	0	0	0	10129	1194	42	3	4504	3	MYH2	17	10441144	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	11014	10441144	70754066	1985	33635											
DNAH9	1770	broad.mit.edu	37	chr17	11556077	11556077	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgtttcttttggggaacaGgcatttgcgattatgtcact	10	6	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11556077	C	C	11556077	5	2	15	1	0	0	0	0	0	0	1	0	4648	1014	35	4	2407	4	DNAH9	17	11556077	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	1114933	11556077	69639133	1986	33636											
DNAH9	1770	broad.mit.edu	37	chr17	11726227	11726227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctacaactatacaactcCcaagtcctttctggagttca	6	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11726227	A	A	11726227	3	1	15	1	0	0	0	0	1	0	0	0	4648	623	22	2	9312	2	DNAH9	17	11726227	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	170150	11726227	69468983	1987	33637											
DNAH9	1770	broad.mit.edu	37	chr17	11757756	11757756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatcgctgtgagtgaccCcagagcccctcaccctgcta	9	16	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11757756	A	A	11757756	1	1	15	0	1	0	0	0	0	0	0	0	4648	638	22	2		2	DNAH9	17	11757756	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	31529	11757756	69437454	1988	33638											
MAP2K4	6416	broad.mit.edu	37	chr17	12011084	12011084	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttaagatgtataagaatAacagatatttgttattttat	5	1	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12011084	T	T	12011084	1	4	15	0	1	0	0	0	0	0	0	0	9331	377	13	5		5	MAP2K4	17	12011084	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	253328	12011084	69184126	1989	33639											
HS3ST3B1	9953	broad.mit.edu	37	chr17	14205168	14205168	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgagggcgctgcgagcccGgaggagcagagtcccgaggt	19	12	0	1	rs62636622	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14205168	T	T	14205168	2	4	15	1	0	0	0	0	0	0	0	1	7433	1103	39	1		1	HS3ST3B1	17	14205168	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2194084	14205168	66990042	1990	33640											
TRIM16	10626	broad.mit.edu	37	chr17	15516139	15516139	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcttgtataggaccccTggaaaaacaaaaaaaaacca	5	10	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15516139	G	G	15516139	5	3	15	1	0	0	0	0	0	0	1	0	16615	1594	55	5		5	TRIM16	17	15516139	Splice_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	1310971	15516139	65679071	1991	33641											
TBC1D26	353149	broad.mit.edu	37	chr17	15641674	15641674	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctagatattgacagaatCaagtcccagaacccaggcaa	8	10	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15641674	A	A	15641674	2	1	15	1	0	0	0	0	0	0	0	1	15735	816	29	3		3	TBC1D26	17	15641674	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	125535	15641674	65553536	1992	33642											
TBC1D26	353149	broad.mit.edu	37	chr17	15641927	15641927	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctttctgcagaaggaaacCttccttccttccttccagaa	6	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15641927	G	G	15641927	1	3	15	0	1	0	0	0	0	0	0	0	15735	696	24	4		4	TBC1D26	17	15641927	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	253	15641927	65553283	1993	33643											
FAM83G	644815	broad.mit.edu	37	chr17	18881367	18881367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtagcctatggtctgtccCattctggggagcttcctctt	12	11	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18881367	A	A	18881367	3	1	15	1	0	0	0	0	1	0	0	0	5692	594	21	2	867	2	FAM83G	17	18881367	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3239440	18881367	62313843	1994	33644											
MAP2K3	5606	broad.mit.edu	37	chr17	21201688	21201688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggacattgatgtcaaGggataggccagacgcctcac	14	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21201688	T	T	21201688	1	4	15	0	1	0	0	0	0	0	0	0	9330	1015	35	2		2	MAP2K3	17	21201688	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2320321	21201688	59993522	1995	33645											
MAP2K3	5606	broad.mit.edu	37	chr17	21208333	21208333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggcttacctggggcggGtgttcacgcctcactcttcc	14	13	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21208333	T	T	21208333	1	4	15	0	1	0	0	0	0	0	0	0	9330	1276	44	3		3	MAP2K3	17	21208333	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6645	21208333	59986877	1996	33646											
NOS2	4843	broad.mit.edu	37	chr17	26116678	26116678	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactcattctgctgcttgctGaggttgtgatactgaaggtc	12	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26116678	A	A	26116678	2	1	15	1	0	0	0	0	0	0	0	1	10638	1277	45	4		4	NOS2	17	26116678	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	4908345	26116678	55078532	1997	33647											
C17orf63	55731	broad.mit.edu	37	chr17	27085451	27085451	+	Frame_Shift_Del	DEL	C	-	-													aatccactgtttgcatcaagCtgttctggcttgccactgga							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27085451	-	-	27085451	7	5	15	1	0	1	0	1	0	0	0	0	1887	797	28	0		0	C17orf63	17	27085451	Frame_Shift_Del	DEL	C	TCGA-05-4410-01A-21D-1855-08	968773	27085451	54109759	1998	33648											
SEZ6	124925	broad.mit.edu	37	chr17	27306826	27306826	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgagaaattccagctacAagggcctgggaggcaggagg	16	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27306826	C	C	27306826	3	2	15	1	0	0	0	0	1	0	0	0	14255	130	5	5	2327	5	SEZ6	17	27306826	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	221375	27306826	53888384	1999	33649											
SSH2	85464	broad.mit.edu	37	chr17	27957793	27957793	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccaataaagtgcatgttcCttacatattacacctgcccc	4	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27957793	T	T	27957793	1	4	15	0	1	0	0	0	0	0	0	0	15303	696	24	4		4	SSH2	17	27957793	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	650967	27957793	53237417	2000	33650											
EFCAB5	374786	broad.mit.edu	37	chr17	28396155	28396155	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagaatatctaagctggAaccagaaccaaatgcaaaga	8	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28396155	T	T	28396155	1	4	15	0	1	0	0	0	0	0	0	0	4978	261	9	5		5	EFCAB5	17	28396155	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	438362	28396155	52799055	2001	33651											
NF1	4763	broad.mit.edu	37	chr17	29587341	29587341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaattcaaacataagtctGggtgtatctggtgttgaaaa	9	4	3	1	rs17881285	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29587341	T	T	29587341	1	4	15	0	1	0	0	0	0	0	0	0	10451	1363	47	2		2	NF1	17	29587341	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1191186	29587341	51607869	2002	33652											
UTP6	55813	broad.mit.edu	37	chr17	30213133	30213133	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagtacaaggaggaaaagCactaggacgaaaattaacaa	11	5	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30213133	T	T	30213133	1	4	15	0	1	0	0	0	0	0	0	0	17229	725	25	4		4	UTP6	17	30213133	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	625792	30213133	50982077	2003	33653											
ZNF207	7756	broad.mit.edu	37	chr17	30677106	30677106	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcggaggtctgcgtcatGtgaccctccccttcttggct	13	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30677106	A	A	30677106	1	1	15	0	1	0	0	0	0	0	0	0	17891	1392	48	4		4	ZNF207	17	30677106	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	463973	30677106	50518104	2004	33654											
C17orf102	400591	broad.mit.edu	37	chr17	32904758	32904759	+	Intron	DNP	TG	CT	CT													agagagaagaattctatgtcTgagtccctgcccaccctgac							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	32904759	CT	CT	32904758	1	2	15	0	1	0	0	0	0	0	0	0	1863	1595	55	5		5	C17orf102	17	32904758	Intron	DNP	TG	TCGA-05-4410-01A-21D-1855-08	2227652	32904758	48290452	2005	33655											
TMEM132E	124842	broad.mit.edu	37	chr17	32956077	32956077	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcagctggactttgaaatgGagaacttcaccagccagtca	10	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32956077	A	A	32956077	3	1	15	1	0	0	0	0	1	0	0	0	16171	1175	41	4	940	4	TMEM132E	17	32956077	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	51319	32956077	48239133	2006	33656											
UNC45B	146862	broad.mit.edu	37	chr17	33479737	33479737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgttcacaattctattGtatttattaattcatcgtac	3	6	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33479737	T	T	33479737	1	4	15	0	1	0	0	0	0	0	0	0	17115	1392	48	3		3	UNC45B	17	33479737	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	523660	33479737	47715473	2007	33657											
UNC45B	146862	broad.mit.edu	37	chr17	33501253	33501253	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccacattgccatcttttcatCtcctcaggacaagaaggact	6	13	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33501253	G	G	33501253	1	3	15	0	1	0	0	0	0	0	0	0	17115	928	32	4		4	UNC45B	17	33501253	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	21516	33501253	47693957	2008	33658											
SLFN11	91607	broad.mit.edu	37	chr17	33687454	33687454	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catactgaaagaggctctatCagtaggtggaatgtgtgact	12	6	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33687454	A	A	33687454	1	1	15	0	1	0	0	0	0	0	0	0	14847	841	29	3		3	SLFN11	17	33687454	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	186201	33687454	47507756	2009	33659											
CCL15	6359	broad.mit.edu	37	chr17	34325363	34325363	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgtttcaaaataacttttCatgagtgaacacgggatgct	8	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34325363	T	T	34325363	3	4	15	1	0	0	0	0	1	0	0	0	2914	826	29	4	148	4	CCL15	17	34325363	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	637909	34325363	46869847	2010	33660											
CCL4	6351	broad.mit.edu	37	chr17	34431161	34431161	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccactcactctcctgtgCccccacatttgtcctaggcc	5	18	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34431161	A	A	34431161	1	1	15	0	1	0	0	0	0	0	0	0	2932	754	26	3		3	CCL4	17	34431161	5'Flank	SNP	C	TCGA-05-4410-01A-21D-1855-08	105798	34431161	46764049	2011	33661											
CACNB1	782	broad.mit.edu	37	chr17	37343027	37343027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttggcagcatccccttcCcctgccccacccagacacct	8	20	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37343027	A	A	37343027	1	1	15	0	1	0	0	0	0	0	0	0	2578	638	22	2		2	CACNB1	17	37343027	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2911866	37343027	43852183	2012	33662											
RARA	5914	broad.mit.edu	37	chr17	38510598	38510598	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgcccgagcaggacaccatGaccttctcggacgggctgac	12	15	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38510598	A	A	38510598	3	1	15	1	0	0	0	0	1	0	0	0	13160	1290	45	4	1041	4	RARA	17	38510598	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1167571	38510598	42684612	2013	33663											
KRTAP9-8	83901	broad.mit.edu	37	chr17	39394620	39394620	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactgcagaagaacctgctAccaccccacgactgtctgcc	8	16	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39394620	G	G	39394620	3	3	15	1	0	0	0	0	1	0	0	0	8648	391	14	5	319	5	KRTAP9-8	17	39394620	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	884022	39394620	41800590	2014	33664											
KRT38	8687	broad.mit.edu	37	chr17	39594724	39594724	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggggcatttgcagtgcagtGagagtgaaggacacgtacca	15	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39594724	C	C	39594724	1	2	15	0	1	0	0	0	0	0	0	0	8546	1305	45	4		4	KRT38	17	39594724	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	200104	39594724	41600486	2015	33665											
JUP	3728	broad.mit.edu	37	chr17	39919432	39919432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatgagagcctccacacCgctgttctgtgtcaccagcg	11	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39919432	A	A	39919432	3	1	15	1	0	0	0	0	1	0	0	0	8042	652	23	1	965	1	JUP	17	39919432	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	324708	39919432	41275778	2016	33666											
SC65	10609	broad.mit.edu	37	chr17	39959703	39959703	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagagtagcgccacggttGtgggagaaaccgggtcacag	15	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39959703	A	A	39959703	1	1	15	0	1	0	0	0	0	0	0	0	13979	1392	48	4		4	SC65	17	39959703	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	40271	39959703	41235507	2017	33667											
ATP6V0A1	535	broad.mit.edu	37	chr17	40666088	40666088	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtcaaatggaaattacatGaaggttctggaattattcag	9	4	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40666088	A	A	40666088	1	1	15	0	1	0	0	0	0	0	0	0	1172	1305	45	4		4	ATP6V0A1	17	40666088	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	706385	40666088	40529122	2018	33668											
NAGLU	4669	broad.mit.edu	37	chr17	40695601	40695601	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggccgtccctacagatgaAtaccagcatctggtacaacc	9	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40695601	G	G	40695601	3	3	15	1	0	0	0	0	1	0	0	0	10237	101	4	5	1599	5	NAGLU	17	40695601	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	29513	40695601	40499609	2019	33669											
ARL4D	379	broad.mit.edu	37	chr17	41477512	41477512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtgctggccaacaagcagGaccagcccggggcactgagc	15	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41477512	T	T	41477512	3	4	15	1	0	0	0	0	1	0	0	0	942	1174	41	3	414	3	ARL4D	17	41477512	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	781911	41477512	39717698	2020	33670											
DHX8	1659	broad.mit.edu	37	chr17	41567678	41567678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgtaaccacccttccctAcaggacattctttgcctttt	6	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41567678	G	G	41567678	1	3	15	0	1	0	0	0	0	0	0	0	4555	406	14	5		5	DHX8	17	41567678	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	90166	41567678	39627532	2021	33671											
CD300LG	146894	broad.mit.edu	37	chr17	41934478	41934478	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacatctctttcagctcaacAggccacggagacacagagga	9	12	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41934478	T	T	41934478	3	4	15	1	0	0	0	0	1	0	0	0	3032	188	7	5	861	5	CD300LG	17	41934478	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	366800	41934478	39260732	2022	33672											
KIF18B	146909	broad.mit.edu	37	chr17	43004470	43004470	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagggaggacagggaaggAggctgatcagcagggaaccg	21	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43004470	C	C	43004470	1	2	15	0	1	0	0	0	0	0	0	0	8351	319	11	5		5	KIF18B	17	43004470	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1069992	43004470	38190740	2023	33673											
C17orf46	124783	broad.mit.edu	37	chr17	43333282	43333282	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgttcgagttggcttcCgtgtccagctcagcttcaag	10	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43333282	T	T	43333282	2	4	15	1	0	0	0	0	0	0	0	1	1873	639	23	4		4	C17orf46	17	43333282	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	328812	43333282	37861928	2024	33674											
ITGB3	3690	broad.mit.edu	37	chr17	45376866	45376867	+	Missense_Mutation	DNP	CC	AA	AA													ggacacctgtgagaagtgccCcacctgcccagatgcctgca							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	45376867	AA	AA	45376866	3	1	15	1	0	0	0	0	1	0	0	0	7965	623	22	2	1925	2	ITGB3	17	45376866	Missense_Mutation	DNP	CC	TCGA-05-4410-01A-21D-1855-08	2043584	45376866	35818344	2025	33675											
SP2	6668	broad.mit.edu	37	chr17	45993740	45993740	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagattcaggggtcacaactGagcgcctcctatcctggagg	12	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45993740	C	C	45993740	2	2	15	1	0	0	0	0	0	0	0	1	15078	1277	45	4		4	SP2	17	45993740	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	616874	45993740	35201470	2026	33676											
COPZ2	51226	broad.mit.edu	37	chr17	46111234	46111234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggggacacttactctcaGtccggctggtcttgttgaag	14	9	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46111234	T	T	46111234	3	4	15	1	0	0	0	0	1	0	0	0	3774	1029	36	3	397	3	COPZ2	17	46111234	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	117494	46111234	35083976	2027	33677											
TTLL6	284076	broad.mit.edu	37	chr17	46847242	46847242	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgtgttcggactctccCagaagctcttggattttgtg	11	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46847242	A	A	46847242	3	1	15	1	0	0	0	0	1	0	0	0	16857	595	21	2	425	2	TTLL6	17	46847242	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	736008	46847242	34347968	2028	33678											
COL1A1	1277	broad.mit.edu	37	chr17	48263689	48263689	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcacgcacctggaatccatCggtcatgctctcgccgaacc	8	17	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48263689	T	T	48263689	3	4	15	1	0	0	0	0	1	0	0	0	3709	884	31	4	412	4	COL1A1	17	48263689	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1416447	48263689	32931521	2029	33679											
COL1A1	1277	broad.mit.edu	37	chr17	48274240	48274240	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcttttggatgtccacTctctgtcccttgggacttct	10	11	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48274240	C	C	48274240	1	2	15	0	1	0	0	0	0	0	0	0	3709	1566	54	5		5	COL1A1	17	48274240	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	10551	48274240	32920970	2030	33680											
LRRC59	55379	broad.mit.edu	37	chr17	48470177	48470177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggaggttgaccagacGgccaaagtctgctggcagct	15	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48470177	A	A	48470177	3	1	15	1	0	0	0	0	1	0	0	0	9102	1116	39	4	696	4	LRRC59	17	48470177	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	195937	48470177	32725033	2031	33681											
LRRC59	55379	broad.mit.edu	37	chr17	48474597	48474597	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccttcaccgggacctcatTcaggtcgctgaggctcaggt	11	14	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48474597	A	A	48474597	3	1	15	1	0	0	0	0	1	0	0	0	9102	1783	62	5	869	5	LRRC59	17	48474597	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	4420	48474597	32720613	2032	33682											
RSAD1	55316	broad.mit.edu	37	chr17	48557178	48557178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatttggaggagtggtggGggataggtgcaggcatccca	17	5	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48557178	T	T	48557178	1	4	15	0	1	0	0	0	0	0	0	0	13805	1247	43	2		2	RSAD1	17	48557178	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	82581	48557178	32638032	2033	33683											
MYCBPAP	84073	broad.mit.edu	37	chr17	48600956	48600956	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggtctctgtccctctcAggtgtgattctgcctggaga	12	12	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48600956	T	T	48600956	5	4	15	1	0	0	0	0	0	0	1	0	10113	202	7	5	1621	5	MYCBPAP	17	48600956	Splice_Site	SNP	A	TCGA-05-4410-01A-21D-1855-08	43778	48600956	32594254	2034	33684											
CACNA1G	8913	broad.mit.edu	37	chr17	48684342	48684342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctggatgctgtgggcgtgGaccagcaggtagggctgagg	21	7	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48684342	T	T	48684342	3	4	15	1	0	0	0	0	1	0	0	0	2570	1174	41	3	4844	3	CACNA1G	17	48684342	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	83386	48684342	32510868	2035	33685											
KIF2B	84643	broad.mit.edu	37	chr17	51901776	51901776	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagatacaaccaaggccaGccggaaaaggcagctggaag	13	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51901776	C	C	51901776	3	2	15	1	0	0	0	0	1	0	0	0	8368	971	34	4	1384	4	KIF2B	17	51901776	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3217434	51901776	29293434	2036	33686											
OR4D2	124538	broad.mit.edu	37	chr17	56247902	56247902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaccaggacatgcagGcagcagtgagaagattaggg	16	6	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247902	A	A	56247902	3	1	15	1	0	0	0	0	1	0	0	0	11150	1203	42	4	888	4	OR4D2	17	56247902	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4346126	56247902	24947308	2037	33687											
MPO	4353	broad.mit.edu	37	chr17	56348979	56348979	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtcaaggatgggcccacAgccacccagcggcccacgac	12	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56348979	C	C	56348979	1	2	15	0	1	0	0	0	0	0	0	0	9826	203	7	5		5	MPO	17	56348979	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	101077	56348979	24846231	2038	33688											
MPO	4353	broad.mit.edu	37	chr17	56353093	56353093	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaagccactgtcattctTaaggcctccatcccagaaaa	6	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56353093	A	A	56353093	1	1	15	0	1	0	0	0	0	0	0	0	9826	1769	61	5		5	MPO	17	56353093	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	4114	56353093	24842117	2039	33689											
MPO	4353	broad.mit.edu	37	chr17	56355090	56355090	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctggtgaggacagtctcTctaagtacaaacccacaagc	10	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56355090	C	C	56355090	1	2	15	0	1	0	0	0	0	0	0	0	9826	1566	54	5		5	MPO	17	56355090	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1997	56355090	24840120	2040	33690											
RNF43	54894	broad.mit.edu	37	chr17	56440118	56440118	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctaactggaggttcccttGagtcctccatctgaggggat	12	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56440118	A	A	56440118	1	1	15	0	1	0	0	0	0	0	0	0	13606	1305	45	4		4	RNF43	17	56440118	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	85028	56440118	24755092	2041	33691											
HSF5	124535	broad.mit.edu	37	chr17	56557394	56557394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtataggtaacctcagttGgaaacctctggagtacagga	12	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56557394	A	A	56557394	3	1	15	1	0	0	0	0	1	0	0	0	7466	1348	47	4	1025	4	HSF5	17	56557394	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	117276	56557394	24637816	2042	33692											
PPM1E	22843	broad.mit.edu	37	chr17	57046780	57046780	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaacatttagtctcaTtattctgaatgacaaatgca	6	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57046780	A	A	57046780	1	1	15	0	1	0	0	0	0	0	0	0	12439	1508	52	5		5	PPM1E	17	57046780	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	489386	57046780	24148430	2043	33693											
PRR11	55771	broad.mit.edu	37	chr17	57262850	57262850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccatctcgtatctgccaccGagaactttacagtgtaaaac	6	12	2	1	rs140473884		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57262850	T	T	57262850	3	4	15	1	0	0	0	0	1	0	0	0	12689	1058	37	3	339	3	PRR11	17	57262850	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	216070	57262850	23932360	2044	33694											
MED13	9969	broad.mit.edu	37	chr17	60028130	60028130	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagccacttctatatttctCaggacttaggctgtcaatca	6	10	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60028130	T	T	60028130	1	4	15	0	1	0	0	0	0	0	0	0	9523	841	29	4		4	MED13	17	60028130	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2765280	60028130	21167080	2045	33695											
MRC2	9902	broad.mit.edu	37	chr17	60769494	60769494	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagagcagcttctcccCatcaggtgagtgaaaggcaa	12	10	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60769494	A	A	60769494	3	1	15	1	0	0	0	0	1	0	0	0	9852	594	21	2	4328	2	MRC2	17	60769494	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	741364	60769494	20425716	2046	33696											
KCNH6	81033	broad.mit.edu	37	chr17	61623234	61623234	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccagagacatggctcagatCctggatttgcagggagttgg	14	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61623234	T	T	61623234	3	4	15	1	0	0	0	0	1	0	0	0	8106	855	30	4	3010	4	KCNH6	17	61623234	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	853740	61623234	19571976	2047	33697											
SCN4A	6329	broad.mit.edu	37	chr17	62025346	62025346	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatctccatgatgaagatGtaggtgaagaccttgtcggc	12	8	1	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62025346	T	T	62025346	4	4	15	1	0	0	0	0	0	1	0	0	14033	1372	48	3	2320	3	SCN4A	17	62025346	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	402112	62025346	19169864	2048	33698											
APOH	350	broad.mit.edu	37	chr17	64219734	64219734	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcattgagctgtgactgaaGagattccagatgtgagactt	11	7	1	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64219734	C	C	64219734	1	2	15	0	1	0	0	0	0	0	0	0	806	957	33	4		4	APOH	17	64219734	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2194388	64219734	16975476	2049	33699											
BPTF	2186	broad.mit.edu	37	chr17	65944154	65944154	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtcttaagcctttcaaAatgaaacgcccagcattaca	6	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65944154	T	T	65944154	1	4	15	0	1	0	0	0	0	0	0	0	1504	29	1	5		5	BPTF	17	65944154	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1724420	65944154	15251056	2050	33700											
BPTF	2186	broad.mit.edu	37	chr17	65962715	65962715	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatggcctggcctttccttGaaccagtagaccctaatgat	9	11	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65962715	C	C	65962715	3	2	15	1	0	0	0	0	1	0	0	0	1504	1291	45	4	8970	4	BPTF	17	65962715	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	18561	65962715	15232495	2051	33701											
KPNA2	3838	broad.mit.edu	37	chr17	66033164	66033164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataattcagttcttatttGgtactattattgacaaagga	7	4	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66033164	T	T	66033164	1	4	15	0	1	0	0	0	0	0	0	0	8501	1363	47	2		2	KPNA2	17	66033164	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	70449	66033164	15162046	2052	33702											
ARSG	22901	broad.mit.edu	37	chr17	66352843	66352851	+	In_Frame_Del	DEL	TCCCTCTTT	-	-													ctgttacactgacgtggcccTccctctttatgaaaacctca					rs115207014	byFrequency;by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66352851	-	-	66352843	7	5	15	1	0	1	0	1	0	0	0	0	996	1551	54	0	620	0	ARSG	17	66352843	In_Frame_Del	DEL	TCCCTCTTT	TCGA-05-4410-01A-21D-1855-08	319679	66352843	14842367	2053	33703											
ABCA6	23460	broad.mit.edu	37	chr17	67103890	67103890	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaagacttcatttagagttGacatggaaatgtcataacct	7	6	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67103890	C	C	67103890	4	2	15	1	0	0	0	0	0	1	0	0	36	1294	45	4	2605	4	ABCA6	17	67103890	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	751047	67103890	14091320	2054	33704											
KCNJ16	3773	broad.mit.edu	37	chr17	68128375	68128375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatgtctacttcaagcaCatttttggagaatggggaag	11	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68128375	A	A	68128375	3	1	15	1	0	0	0	0	1	0	0	0	8120	477	17	3	149	3	KCNJ16	17	68128375	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1024485	68128375	13066835	2055	33705											
CDC42EP4	23580	broad.mit.edu	37	chr17	71281726	71281726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagagggagctgctgtccCgtgtggtgtggctgcccatg	18	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71281726	A	A	71281726	3	1	15	1	0	0	0	0	1	0	0	0	3108	652	23	1	160	1	CDC42EP4	17	71281726	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3153351	71281726	9913484	2056	33706											
SDK2	54549	broad.mit.edu	37	chr17	71394430	71394430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccccagccctgaggctgCtgccttctccccgggccagt	10	20	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71394430	A	A	71394430	1	1	15	0	1	0	0	0	0	0	0	0	14082	812	28	3		3	SDK2	17	71394430	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	112704	71394430	9800780	2057	33707											
KIF19	124602	broad.mit.edu	37	chr17	72346768	72346768	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccctgtgcctgggacagagGagcacgacctgtggctgtac	14	13	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72346768	T	T	72346768	1	4	15	0	1	0	0	0	0	0	0	0	8352	1189	41	3		3	KIF19	17	72346768	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	952338	72346768	8848442	2058	33708											
CD300E	342510	broad.mit.edu	37	chr17	72619716	72619716	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccccaaagccacagccccaCtcacctgagaggcagagaag	9	16	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72619716	G	G	72619716	1	3	15	0	1	0	0	0	0	0	0	0	3028	580	20	4		4	CD300E	17	72619716	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	272948	72619716	8575494	2059	33709											
ACOX1	51	broad.mit.edu	37	chr17	73974831	73974831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactcgggcctccgttccaCcctccctgaatcacaatagg	7	17	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73974831	A	A	73974831	1	1	15	0	1	0	0	0	0	0	0	0	158	522	18	3		3	ACOX1	17	73974831	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1355115	73974831	7220379	2060	33710											
C17orf95	124512	broad.mit.edu	37	chr17	74729846	74729846	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaactatgagcagaccacttCagcttgagaatgcagtgggt	11	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74729846	T	T	74729846	1	4	15	0	1	0	0	0	0	0	0	0	1909	841	29	4		4	C17orf95	17	74729846	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	755015	74729846	6465364	2061	33711											
MGAT5B	146664	broad.mit.edu	37	chr17	74865025	74865025	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcttcggcccgcagagGgttcgtggcccggacgcggc	18	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74865025	T	T	74865025	1	4	15	0	1	0	0	0	0	0	0	0	9642	1247	43	2		2	MGAT5B	17	74865025	5'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	135179	74865025	6330185	2062	33712											
TNRC6C	57690	broad.mit.edu	37	chr17	76079273	76079273	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggatagacccatgcaagttAgagcacgcaggccgagtgca	13	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76079273	G	G	76079273	1	3	15	0	1	0	0	0	0	0	0	0	16465	435	15	5		5	TNRC6C	17	76079273	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1214248	76079273	5115937	2063	33713											
TMC6	11322	broad.mit.edu	37	chr17	76116639	76116639	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtggagacacagggccctGatgggaaaggtccaggcctg	18	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76116639	A	A	76116639	1	1	15	0	1	0	0	0	0	0	0	0	16112	1305	45	4		4	TMC6	17	76116639	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	37366	76116639	5078571	2064	33714											
RNF213	57674	broad.mit.edu	37	chr17	78319272	78319272	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacttgagaggctctgcctGaccttagggatcccccaggc	11	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78319272	T	T	78319272	2	4	15	1	0	0	0	0	0	0	0	1	13588	1277	45	3		3	RNF213	17	78319272	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2202633	78319272	2875938	2065	33715											
FLJ35220	284131	broad.mit.edu	37	chr17	78395813	78395813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccctccttccccctgggGgagggaaggctgctgcaggt	16	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78395813	T	T	78395813	1	4	15	0	1	0	0	0	0	0	0	0	5984	1247	43	2		2	FLJ35220	17	78395813	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	76541	78395813	2799397	2066	33716											
NPTX1	4884	broad.mit.edu	37	chr17	78444785	78444785	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagatgttgaagtgggccAgctcacccacaaatgcctgg	11	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78444785	C	C	78444785	3	2	15	1	0	0	0	0	1	0	0	0	10697	188	7	5	175	5	NPTX1	17	78444785	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	48972	78444785	2750425	2067	33717											
SLC38A10	124565	broad.mit.edu	37	chr17	79233989	79233989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccagacccaggagacacCcagtgggcacttgccctgag	13	14	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79233989	A	A	79233989	1	1	15	0	1	0	0	0	0	0	0	0	14716	638	22	2		2	SLC38A10	17	79233989	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	789204	79233989	1961221	2068	33718											
BAHCC1	57597	broad.mit.edu	37	chr17	79430555	79430555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacccttacagagcatgGgtgggcgggtggtctttcct	16	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79430555	T	T	79430555	1	4	15	0	1	0	0	0	0	0	0	0	1301	1247	43	2		2	BAHCC1	17	79430555	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	196566	79430555	1764655	2069	33719											
NPLOC4	55666	broad.mit.edu	37	chr17	79573732	79573732	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcacctgtctgttcagcgtGatggcgctcggctggcactt	12	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79573732	C	C	79573732	3	2	15	1	0	0	0	0	1	0	0	0	10681	1280	45	4	1231	4	NPLOC4	17	79573732	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	143177	79573732	1621478	2070	33720											
HGS	9146	broad.mit.edu	37	chr17	79660635	79660635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagccccctccgtcccgtGggcacctcttccccggcgcc	9	23	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79660635	T	T	79660635	1	4	15	0	1	0	0	0	0	0	0	0	7154	1363	47	2		2	HGS	17	79660635	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	86903	79660635	1534575	2071	33721											
HGS	9146	broad.mit.edu	37	chr17	79662893	79662893	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaacgccgtcaccaccttCgtgaaccgcatgaagagtaa	9	13	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79662893	T	T	79662893	2	4	15	1	0	0	0	0	0	0	0	1	7154	883	31	4		4	HGS	17	79662893	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2258	79662893	1532317	2072	33722											
THOC4	10189	broad.mit.edu	37	chr17	79846107	79846107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccccagctggctccccCgggactcactctcgcattat	9	18	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79846107	A	A	79846107	1	1	15	0	1	0	0	0	0	0	0	0	15990	667	23	1		1	THOC4	17	79846107	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	183214	79846107	1349103	2073	33723											
ARHGAP28	79822	broad.mit.edu	37	chr18	6876036	6876036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaaatatatatatgcttGgtaacttattgattcatgtc	7	5	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6876036	T	T	6876036	1	4	15	0	1	0	0	0	0	0	0	0	879	1363	47	2		2	ARHGAP28	18	6876036	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08		6876036	71201212	2074	33724											
ARHGAP28	79822	broad.mit.edu	37	chr18	6896572	6896572	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtccatggccattcaactCaacaatcaaaccaaagccaa	5	13	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6896572	T	T	6896572	2	4	15	1	0	0	0	0	0	0	0	1	879	813	29	4		4	ARHGAP28	18	6896572	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	20536	6896572	71180676	2075	33725											
LAMA1	284217	broad.mit.edu	37	chr18	6986082	6986082	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacttttaattgcttacgtTggagtattttgttacctgtt	7	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6986082	A	A	6986082	1	1	15	0	1	0	0	0	0	0	0	0	8677	1827	63	5		5	LAMA1	18	6986082	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	89510	6986082	71091166	2076	33726											
LAMA1	284217	broad.mit.edu	37	chr18	7026164	7026164	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaggattttcagatttatCtataagcaacttgaagtcca	6	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7026164	A	A	7026164	1	1	15	0	1	0	0	0	0	0	0	0	8677	928	32	3		3	LAMA1	18	7026164	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	40082	7026164	71051084	2077	33727											
PTPRM	5797	broad.mit.edu	37	chr18	8252603	8252603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgctctgtgctggcctGcatgtttgcctttgtagaac	12	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8252603	T	T	8252603	1	4	15	0	1	0	0	0	0	0	0	0	12914	1334	46	3		3	PTPRM	18	8252603	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1226439	8252603	69824645	2078	33728											
KIAA0802	23255	broad.mit.edu	37	chr18	8777737	8777737	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaacagcctccgttcaGtgtgtgtgtccccacccatg	11	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8777737	C	C	8777737	1	2	15	0	1	0	0	0	0	0	0	0	8264	1044	36	4		4	KIAA0802	18	8777737	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	525134	8777737	69299511	2079	33729											
APCDD1	147495	broad.mit.edu	37	chr18	10485615	10485615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaagtcctcttcctcaccCgccacttcatcttccatgac	4	19	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10485615	A	A	10485615	3	1	15	1	0	0	0	0	1	0	0	0	767	652	23	1	945	1	APCDD1	18	10485615	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1707878	10485615	67591633	2080	33730											
MC2R	4158	broad.mit.edu	37	chr18	13885213	13885213	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagtcgatgatgtcatcgGctgtggtttcaaaactgcca	13	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13885213	A	A	13885213	3	1	15	1	0	0	0	0	1	0	0	0	9457	1203	42	4	592	4	MC2R	18	13885213	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3399598	13885213	64192035	2081	33731											
MIB1	57534	broad.mit.edu	37	chr18	19418493	19418493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataattccctcttttttaTttttttttaaacaatttggg	3	5	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19418493	A	A	19418493	1	1	15	0	1	0	0	0	0	0	0	0	9659	1508	52	5		5	MIB1	18	19418493	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	5533280	19418493	58658755	2082	33732											
C18orf45	85019	broad.mit.edu	37	chr18	20948750	20948750	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaaagataaatgaagTagcagaactattttaaatac	7	3	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20948750	A	A	20948750	1	1	15	0	1	0	0	0	0	0	0	0	1921	1653	57	5		5	C18orf45	18	20948750	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1530257	20948750	57128498	2083	33733											
CABYR	26256	broad.mit.edu	37	chr18	21735704	21735704	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacgacaccacagaagaaatTagaatgtttaaaagaaccag	7	7	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21735704	A	A	21735704	4	1	15	1	0	0	0	0	0	1	0	0	2562	1764	61	5	249	5	CABYR	18	21735704	Nonsense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	786954	21735704	56341544	2084	33734											
ZNF521	25925	broad.mit.edu	37	chr18	22806254	22806254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagcactggagacccaaatCgggagccactgaggtcacaa	11	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22806254	A	A	22806254	3	1	15	1	0	0	0	0	1	0	0	0	18092	884	31	3	2327	3	ZNF521	18	22806254	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1070550	22806254	55270994	2085	33735											
ZNF521	25925	broad.mit.edu	37	chr18	22807073	22807073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatttggggagcattcgGggtggcactctgcaatgtgt	14	9	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22807073	T	T	22807073	3	4	15	1	0	0	0	0	1	0	0	0	18092	1232	43	2	3146	2	ZNF521	18	22807073	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	819	22807073	55270175	2086	33736											
ZNF521	25925	broad.mit.edu	37	chr18	22807426	22807426	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcttgtgtttgaacagcctActgcagtaggtgcatttgaa	11	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22807426	C	C	22807426	3	2	15	1	0	0	0	0	1	0	0	0	18092	388	14	5	3499	5	ZNF521	18	22807426	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	353	22807426	55269822	2087	33737											
DSC3	1825	broad.mit.edu	37	chr18	28574489	28574489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaaatgcaaatgattgGtctatatcacaaccatacca	5	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28574489	T	T	28574489	1	4	15	0	1	0	0	0	0	0	0	0	4807	1276	44	3		3	DSC3	18	28574489	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	5767063	28574489	49502759	2088	33738											
DSG1	1828	broad.mit.edu	37	chr18	28914145	28914145	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgaaagaacaaatgtgGgaattttaaaggttgttaag	11	1	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28914145	T	T	28914145	4	4	15	1	0	0	0	0	0	1	0	0	4816	1233	43	2	1015	2	DSG1	18	28914145	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	339656	28914145	49163103	2089	33739											
TTR	7276	broad.mit.edu	37	chr18	29178442	29178442	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataaaattaattaagttgGcactggacttccggtggtca	10	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29178442	T	T	29178442	1	4	15	0	1	0	0	0	0	0	0	0	16864	1218	42	3		3	TTR	18	29178442	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	264297	29178442	48898806	2090	33740											
KLHL14	57565	broad.mit.edu	37	chr18	30257087	30257088	+	Intron	DNP	CG	TT	TT													atttggaaggatacagaaaaCgtaagcacaaacgaaataaa							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30257088	TT	TT	30257087	1	4	15	0	1	0	0	0	0	0	0	0	8441	551	19	4		4	KLHL14	18	30257087	Intron	DNP	CG	TCGA-05-4410-01A-21D-1855-08	1078645	30257087	47820161	2091	33741											
C18orf34	374864	broad.mit.edu	37	chr18	30992007	30992007	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacttacctatattggtttGatcatctctagtggaagaag	8	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30992007	T	T	30992007	3	4	15	1	0	0	0	0	1	0	0	0	1920	1299	45	3	2641	3	C18orf34	18	30992007	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	734920	30992007	47085241	2092	33742											
ASXL3	80816	broad.mit.edu	37	chr18	31324051	31324051	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggttgcacacccgaccgtCgcaatgtttactggaaacat	9	12	0	0	rs149577667	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324051	A	A	31324051	2	1	15	1	0	0	0	0	0	0	0	1	1072	871	31	3		3	ASXL3	18	31324051	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	332044	31324051	46753197	2093	33743											
DTNA	1837	broad.mit.edu	37	chr18	32459649	32459649	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacctgggtacattcacAgtggagctaccacaagtacc	9	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32459649	T	T	32459649	3	4	15	1	0	0	0	0	1	0	0	0	4828	188	7	5	2211	5	DTNA	18	32459649	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	1135598	32459649	45617599	2094	33744											
MAPRE2	10982	broad.mit.edu	37	chr18	32682021	32682021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggaaggagtatgatcctGtagaggcacgacaagggcaa	15	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32682021	T	T	32682021	3	4	15	1	0	0	0	0	1	0	0	0	9387	1377	48	3	616	3	MAPRE2	18	32682021	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	222372	32682021	45395227	2095	33745											
KIAA1328	57536	broad.mit.edu	37	chr18	34539372	34539372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtctctctcagaacttGgtgctgctagaatgcaggaa	10	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34539372	A	A	34539372	3	1	15	1	0	0	0	0	1	0	0	0	8295	1348	47	4	572	4	KIAA1328	18	34539372	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1857351	34539372	43537876	2096	33746											
RIT2	6014	broad.mit.edu	37	chr18	40503402	40503402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatttaccatgggaccacCatgacttattagaaaaatca	5	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40503402	A	A	40503402	1	1	15	0	1	0	0	0	0	0	0	0	13498	609	21	2		2	RIT2	18	40503402	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5964030	40503402	37573846	2097	33747											
SYT4	6860	broad.mit.edu	37	chr18	40853935	40853935	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaagaagagagttcccagCttctcttgtttctcttctga	9	9	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853935	T	T	40853935	2	4	15	1	0	0	0	0	0	0	0	1	15595	796	28	4		4	SYT4	18	40853935	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	350533	40853935	37223313	2098	33748											
SLC14A1	6563	broad.mit.edu	37	chr18	43311243	43311244	+	Intron	DNP	TG	AT	AT													ccagttactgtgggcaacagTgataaaaccacatccttccc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43311244	AT	AT	43311243	1	1	15	0	1	0	0	0	0	0	0	0	14509	1711	59	5		5	SLC14A1	18	43311243	Intron	DNP	TG	TCGA-05-4410-01A-21D-1855-08	2457308	43311243	34766005	2099	33749											
KIAA1632	57724	broad.mit.edu	37	chr18	43493755	43493755	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgggagtcctcttcaaaGatggattccatgttgagcac	11	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43493755	C	C	43493755	3	2	15	1	0	0	0	0	1	0	0	0	8319	932	33	4	4103	4	KIAA1632	18	43493755	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	182512	43493755	34583493	2100	33750											
TCEB3B	51224	broad.mit.edu	37	chr18	44560607	44560607	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcccctcttgagtctctcgGtcgttggaaagctgctcttt	9	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44560607	C	C	44560607	3	2	15	1	0	0	0	0	1	0	0	0	15804	1252	44	4	1236	4	TCEB3B	18	44560607	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1066852	44560607	33516641	2101	33751											
TCEB3B	51224	broad.mit.edu	37	chr18	44560667	44560667	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcccatttcctgggtcCcggccgtctagactgggcct	12	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44560667	T	T	44560667	2	4	15	1	0	0	0	0	0	0	0	1	15804	610	22	4		4	TCEB3B	18	44560667	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	60	44560667	33516581	2102	33752											
CXXC1	30827	broad.mit.edu	37	chr18	47810944	47810944	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcctccttctgttgagcaaGacaagtcaggtcagggtgga	12	10	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47810944	C	C	47810944	1	2	15	0	1	0	0	0	0	0	0	0	4130	957	33	4		4	CXXC1	18	47810944	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3250277	47810944	30266304	2103	33753											
DCC	1630	broad.mit.edu	37	chr18	50734291	50734291	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccattttcaaggcttcctGactaaaattttatggactat	5	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50734291	T	T	50734291	1	4	15	0	1	0	0	0	0	0	0	0	4315	1305	45	3		3	DCC	18	50734291	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2923347	50734291	27342957	2104	33754											
DCC	1630	broad.mit.edu	37	chr18	50994380	50994380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcccagtccaacaatcctGgtgagtcaatattggtgcca	9	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50994380	T	T	50994380	3	4	15	1	0	0	0	0	1	0	0	0	4315	1362	47	2	3834	2	DCC	18	50994380	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	260089	50994380	27082868	2105	33755											
C18orf26	284254	broad.mit.edu	37	chr18	52258503	52258503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagaagcttgtgatactgGcagctcaagaatggacagaa	13	6	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52258503	T	T	52258503	3	4	15	1	0	0	0	0	1	0	0	0	1918	1203	42	3	70	3	C18orf26	18	52258503	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1264123	52258503	25818745	2106	33756											
ALPK2	115701	broad.mit.edu	37	chr18	56171050	56171050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttctgcaggtaaaggtGtttcaaggtacccagcaggc	12	10	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56171050	T	T	56171050	1	4	15	0	1	0	0	0	0	0	0	0	545	1392	48	3		3	ALPK2	18	56171050	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3912547	56171050	21906198	2107	33757											
CDH20	28316	broad.mit.edu	37	chr18	59166403	59166403	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcatgatgagaattaggTgctttcctctcccagcttca	7	11	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59166403	C	C	59166403	1	2	15	0	1	0	0	0	0	0	0	0	3136	1711	59	5		5	CDH20	18	59166403	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	2995353	59166403	18910845	2108	33758											
CDH19	28513	broad.mit.edu	37	chr18	64178885	64178885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaatggtgctcttctatgGattcatctctatccactgca	6	10	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64178885	T	T	64178885	3	4	15	1	0	0	0	0	1	0	0	0	3134	1174	41	3	834	3	CDH19	18	64178885	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5012482	64178885	13898363	2109	33759											
DOK6	220164	broad.mit.edu	37	chr18	67406111	67406111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggtcaggaggaggagGcacaagggcaagggctttgt	20	5	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67406111	A	A	67406111	1	1	15	0	1	0	0	0	0	0	0	0	4741	1218	42	4		4	DOK6	18	67406111	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3227226	67406111	10671137	2110	33760											
RTTN	25914	broad.mit.edu	37	chr18	67741202	67741202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttgtcctagatggagcCctccaaaacttgaatgagtc	9	10	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67741202	A	A	67741202	3	1	15	1	0	0	0	0	1	0	0	0	13848	622	22	2	2151	2	RTTN	18	67741202	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	335091	67741202	10336046	2111	33761											
FAM69C	125704	broad.mit.edu	37	chr18	72109163	72109163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagagcaccctctcctccCccagccctggcggactctca	7	20	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72109163	A	A	72109163	1	1	15	0	1	0	0	0	0	0	0	0	5655	638	22	2		2	FAM69C	18	72109163	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	4367961	72109163	5968085	2112	33762											
CNDP1	84735	broad.mit.edu	37	chr18	72247446	72247446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgactctaggactacaCccgtggattgcaaatattga	8	10	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72247446	A	A	72247446	3	1	15	1	0	0	0	0	1	0	0	0	3625	506	18	3	1286	3	CNDP1	18	72247446	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	138283	72247446	5829802	2113	33763											
ADNP2	22850	broad.mit.edu	37	chr18	77893726	77893726	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacagtgaatattttaggtGaaactaaatcatctaggagc	8	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77893726	A	A	77893726	3	1	15	1	0	0	0	0	1	0	0	0	324	1291	45	4	440	4	ADNP2	18	77893726	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5646280	77893726	183522	2114	33764											
PPAP2C	8612	broad.mit.edu	37	chr19	288086	288086	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggtatctggacggtaGgggtaccggatggagtcatc	17	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	288086	A	A	288086	2	1	15	1	0	0	0	0	0	0	0	1	12388	987	35	4		4	PPAP2C	19	288086	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08		288086	58840897	2115	33765											
PRSSL1	400668	broad.mit.edu	37	chr19	694911	694911	+	Missense_Mutation	SNP	A	T	T													gaagcgcacggatgccatgtAgggcctggagtggggggtca							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	694911	T	T	694911	3	4	15	1	0	0	0	0	1	0	0	0	12742	420	15	5	728	5	PRSSL1	19	694911	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	406825	694911	58434072	2116	33766	193	2									
PRSSL1	400668	broad.mit.edu	37	chr19	694913	694913	+	Missense_Mutation	SNP	G	T	T													agcgcacggatgccatgtagGgcctggagtggggggtcacc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	694913	T	T	694913	3	4	15	1	0	0	0	0	1	0	0	0	12742	1232	43	2	730	2	PRSSL1	19	694913	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2	694913	58434070	2117	33767	193	2									
GRIN3B	116444	broad.mit.edu	37	chr19	1008897	1008897	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acggagccaccagaggggtcGaaggaggagacggcagaggc	19	9	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1008897	A	A	1008897	2	1	15	1	0	0	0	0	0	0	0	1	6850	1045	37	4		4	GRIN3B	19	1008897	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	313984	1008897	58120086	2118	33768											
FAM108A1	81926	broad.mit.edu	37	chr19	1881444	1881444	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaccaggccccggctcgGgctcaggcaccagggagtag	14	17	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1881444	A	A	1881444	3	1	15	1	0	0	0	0	1	0	0	0	5437	1232	43	4	983	4	FAM108A1	19	1881444	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	872547	1881444	57247539	2119	33769											
DOT1L	84444	broad.mit.edu	37	chr19	2220147	2220147	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgcagccccgtgacccctCgtccacacttgaaaagcaga	9	16	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2220147	T	T	2220147	3	4	15	1	0	0	0	0	1	0	0	0	4749	893	31	4	2822	4	DOT1L	19	2220147	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	338703	2220147	56908836	2120	33770											
LMNB2	84823	broad.mit.edu	37	chr19	2444466	2444466	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatctgcagccgggcacgctCtcgagccgtctcatccagga	11	15	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2444466	G	G	2444466	3	3	15	1	0	0	0	0	1	0	0	0	8924	922	32	4	1569	4	LMNB2	19	2444466	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	224319	2444466	56684517	2121	33771											
NFIC	4782	broad.mit.edu	37	chr19	3381731	3381731	+	Missense_Mutation	SNP	G	C	C													atgagttccacccgttcatcGaggccctgctgcctcacgtc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3381731	C	C	3381731	3	2	15	1	0	0	0	0	1	0	0	0	10467	1059	37	4	65	4	NFIC	19	3381731	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	937265	3381731	55747252	2122	33772	194	2									
NFIC	4782	broad.mit.edu	37	chr19	3381733	3381733	+	Missense_Mutation	SNP	G	T	T													gagttccacccgttcatcgaGgccctgctgcctcacgtccg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3381733	T	T	3381733	3	4	15	1	0	0	0	0	1	0	0	0	10467	991	35	2	67	2	NFIC	19	3381733	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2	3381733	55747250	2123	33773	194	2									
MATK	4145	broad.mit.edu	37	chr19	3785124	3785124	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaaaccagagagcctcGccccgccatcgcccccagag	10	19	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3785124	T	T	3785124	2	4	15	1	0	0	0	0	0	0	0	1	9424	1095	38	3		3	MATK	19	3785124	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	403391	3785124	55343859	2124	33774											
ZFR2	23217	broad.mit.edu	37	chr19	3834796	3834796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtagccatggtggtggccGtggggacgggctcctggggt	21	8	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3834796	T	T	3834796	3	4	15	1	0	0	0	0	1	0	0	0	17786	1145	40	3	2652	3	ZFR2	19	3834796	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	49672	3834796	55294187	2125	33775											
GPR108	56927	broad.mit.edu	37	chr19	6732044	6732044	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggtcctcaccagactacGgggaacaggatggcaccaca	12	13	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6732044	C	C	6732044	2	2	15	1	0	0	0	0	0	0	0	1	6689	1103	39	4		4	GPR108	19	6732044	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2897248	6732044	52396939	2126	33776											
INSR	3643	broad.mit.edu	37	chr19	7267321	7267321	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctttctagaacaaggcacGagacactgcttagaaccctg	9	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7267321	T	T	7267321	1	4	15	0	1	0	0	0	0	0	0	0	7843	1073	37	3		3	INSR	19	7267321	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	535277	7267321	51861662	2127	33777											
PNPLA6	10908	broad.mit.edu	37	chr19	7605696	7605696	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccaatctctggttcatcCgttatgctgccgatggcccc	8	16	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7605696	T	T	7605696	1	4	15	0	1	0	0	0	0	0	0	0	12264	667	23	4		4	PNPLA6	19	7605696	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	338375	7605696	51523287	2128	33778											
MUC16	94025	broad.mit.edu	37	chr19	8998800	8998800	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attagtgaaagtgttgaaccCtctcatggcagaaatgccag	10	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8998800	G	G	8998800	1	3	15	0	1	0	0	0	0	0	0	0	10067	696	24	4		4	MUC16	19	8998800	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1393104	8998800	50130183	2129	33779											
MUC16	94025	broad.mit.edu	37	chr19	9019327	9019327	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttccaaggtccactgtGgaggtcccaggagctgagaa	15	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9019327	T	T	9019327	2	4	15	1	0	0	0	0	0	0	0	1	10067	1335	47	2		2	MUC16	19	9019327	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	20527	9019327	50109656	2130	33780											
MUC16	94025	broad.mit.edu	37	chr19	9027157	9027157	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatgattttccatcttcatCtgagtaaaaatgacagagat	6	7	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9027157	A	A	9027157	1	1	15	0	1	0	0	0	0	0	0	0	10067	928	32	3		3	MUC16	19	9027157	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	7830	9027157	50101826	2131	33781											
MUC16	94025	broad.mit.edu	37	chr19	9058698	9058698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggtctccctcagtccaGgggtcagagatgacattgac	11	11	4	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9058698	T	T	9058698	3	4	15	1	0	0	0	0	1	0	0	0	10067	1000	35	2	15103	2	MUC16	19	9058698	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	31541	9058698	50070285	2132	33782											
MUC16	94025	broad.mit.edu	37	chr19	9059073	9059073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtgacagggacaggagagGagtggctactcccagatggt	16	7	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9059073	T	T	9059073	3	4	15	1	0	0	0	0	1	0	0	0	10067	1174	41	3	15478	3	MUC16	19	9059073	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	375	9059073	50069910	2133	33783											
MUC16	94025	broad.mit.edu	37	chr19	9070836	9070836	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgtcgggtgctattgtgGgccgatcaaggtctgagatg	16	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9070836	C	C	9070836	3	2	15	1	0	0	0	0	1	0	0	0	10067	1232	43	4	27241	4	MUC16	19	9070836	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	11763	9070836	50058147	2134	33784											
MUC16	94025	broad.mit.edu	37	chr19	9075173	9075173	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgtttgcatagcaaggatCattcctccagattctgtcat	7	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9075173	G	G	9075173	3	3	15	1	0	0	0	0	1	0	0	0	10067	826	29	4	31578	4	MUC16	19	9075173	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4337	9075173	50053810	2135	33785											
MUC16	94025	broad.mit.edu	37	chr19	9082767	9082767	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgcttgacctgtgctgaaGagagttgtgagttttgatgc	14	6	0	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9082767	T	T	9082767	2	4	15	1	0	0	0	0	0	0	0	1	10067	929	33	3		3	MUC16	19	9082767	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	7594	9082767	50046216	2136	33786											
OR7G1	125962	broad.mit.edu	37	chr19	9226195	9226195	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgagcttggatgttcactAggatctttgggactgtggtt	13	6	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9226195	G	G	9226195	3	3	15	1	0	0	0	0	1	0	0	0	11316	420	15	5	764	5	OR7G1	19	9226195	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	143428	9226195	49902788	2137	33787											
ZNF561	93134	broad.mit.edu	37	chr19	9724852	9724852	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgagtcatttttactTgttttcaaattaaacacagc	4	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9724852	A	A	9724852	1	1	15	0	1	0	0	0	0	0	0	0	18119	1827	63	5		5	ZNF561	19	9724852	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	498657	9724852	49404131	2138	33788											
DNMT1	1786	broad.mit.edu	37	chr19	10249218	10249218	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgggaacagagggagcttctCtccaggggccgcggccagga	17	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10249218	G	G	10249218	3	3	15	1	0	0	0	0	1	0	0	0	4715	922	32	4	914	4	DNMT1	19	10249218	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	524366	10249218	48879765	2139	33789											
S1PR2	9294	broad.mit.edu	37	chr19	10334440	10334440	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcatctggctcagtagccCcaagtctctatctggggtca	12	12	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10334440	A	A	10334440	1	1	15	0	1	0	0	0	0	0	0	0	13905	638	22	2		2	S1PR2	19	10334440	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	85222	10334440	48794543	2140	33790											
KRI1	65095	broad.mit.edu	37	chr19	10673555	10673555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccatcacccacaaccccCttctttgccgtggcagagaa	7	17	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10673555	A	A	10673555	1	1	15	0	1	0	0	0	0	0	0	0	8515	696	24	2		2	KRI1	19	10673555	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	339115	10673555	48455428	2141	33791											
ILF3	3609	broad.mit.edu	37	chr19	10791821	10791821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccggtaagcctgcggcgGttgcctgatggctggggctc	16	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10791821	T	T	10791821	1	4	15	0	1	0	0	0	0	0	0	0	7782	1276	44	3		3	ILF3	19	10791821	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	118266	10791821	48337162	2142	33792											
SMARCA4	6597	broad.mit.edu	37	chr19	11136921	11136921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgtgtgcggaccgcagcGgggcccggtggcctgctcct	18	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11136921	T	T	11136921	1	4	15	0	1	0	0	0	0	0	0	0	14884	1131	39	1		1	SMARCA4	19	11136921	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	345100	11136921	47992062	2143	33793											
HOOK2	29911	broad.mit.edu	37	chr19	12875625	12875625	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgggaacacccagcgtcctCaccatgcgggccttgtccac	11	16	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12875625	T	T	12875625	1	4	15	0	1	0	0	0	0	0	0	0	7350	841	29	4		4	HOOK2	19	12875625	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1738704	12875625	46253358	2144	33794											
GCDH	2639	broad.mit.edu	37	chr19	13004356	13004356	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctggcccgagagctggagCgggtggacagtggctacagg	18	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13004356	G	G	13004356	3	3	15	1	0	0	0	0	1	0	0	0	6349	759	27	4	412	4	GCDH	19	13004356	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	128731	13004356	46124627	2145	33795											
CACNA1A	773	broad.mit.edu	37	chr19	13476086	13476086	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctcccaagagcttgtccCtgaaggagaaaactggaaag	10	10	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13476086	T	T	13476086	1	4	15	0	1	0	0	0	0	0	0	0	2564	696	24	4		4	CACNA1A	19	13476086	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	471730	13476086	45652897	2146	33796											
CCDC130	81576	broad.mit.edu	37	chr19	13862619	13862619	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaccagtaggcagctccCaagatggtgagtagacagcc	14	10	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13862619	A	A	13862619	1	1	15	0	1	0	0	0	0	0	0	0	2792	609	21	2		2	CCDC130	19	13862619	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	386533	13862619	45266364	2147	33797											
DCAF15	90379	broad.mit.edu	37	chr19	14071859	14071859	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctccgtggcctgggaccGgcccccttcctggggtggcc	14	17	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14071859	A	A	14071859	1	1	15	0	1	0	0	0	0	0	0	0	4300	1131	39	4		4	DCAF15	19	14071859	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	209240	14071859	45057124	2148	33798											
EMR2	30817	broad.mit.edu	37	chr19	14875407	14875407	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctccagcagctcatccaGcgcctgtaagatgctctgga	11	14	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14875407	A	A	14875407	2	1	15	1	0	0	0	0	0	0	0	1	5147	962	34	4		4	EMR2	19	14875407	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	803548	14875407	44253576	2149	33799											
ILVBL	10994	broad.mit.edu	37	chr19	15230306	15230306	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcctcttggcccggctcagGatctccacacagcgctgaac	11	16	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15230306	T	T	15230306	2	4	15	1	0	0	0	0	0	0	0	1	7785	1164	41	3		3	ILVBL	19	15230306	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	354899	15230306	43898677	2150	33800											
CYP4F3	4051	broad.mit.edu	37	chr19	15757873	15757873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgtcagctgccattgtaCcaaaggacaaggtcttctac	8	10	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15757873	A	A	15757873	3	1	15	1	0	0	0	0	1	0	0	0	4223	507	18	3	365	3	CYP4F3	19	15757873	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	527567	15757873	43371110	2151	33801											
CYP4F12	66002	broad.mit.edu	37	chr19	15784338	15784338	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcccctctgccctgcaGgatgtcgctgctgagcctgc	11	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15784338	A	A	15784338	5	1	15	1	0	0	0	0	0	0	1	0	4220	1014	35	4	1	4	CYP4F12	19	15784338	Splice_Site	SNP	G	TCGA-05-4410-01A-21D-1855-08	26465	15784338	43344645	2152	33802											
TPM4	7171	broad.mit.edu	37	chr19	16199838	16199838	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaagataagacacaaaaatCctttgtctttgtgcagaaaa	8	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16199838	T	T	16199838	1	4	15	0	1	0	0	0	0	0	0	0	16532	870	30	4		4	TPM4	19	16199838	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	415500	16199838	42929145	2153	33803											
AP1M1	8907	broad.mit.edu	37	chr19	16344420	16344420	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccttacttcactacctcCggcatccaggtacgtaaggc	7	15	1	0	rs149333439	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16344420	A	A	16344420	2	1	15	1	0	0	0	0	0	0	0	1	736	639	23	1		1	AP1M1	19	16344420	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	144582	16344420	42784563	2154	33804											
NXNL1	115861	broad.mit.edu	37	chr19	17571646	17571646	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctggtcgctattgttgcgGatcaggatgcggccagagaa	14	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17571646	T	T	17571646	2	4	15	1	0	0	0	0	0	0	0	1	10883	1164	41	3		3	NXNL1	19	17571646	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1227226	17571646	41557337	2155	33805											
UNC13A	23025	broad.mit.edu	37	chr19	17769095	17769095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtctggaagagagaggcgGtatgggaagagggtgaggaa	20	3	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17769095	A	A	17769095	1	1	15	0	1	0	0	0	0	0	0	0	17110	1276	44	4		4	UNC13A	19	17769095	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	197449	17769095	41359888	2156	33806											
FCHO1	23149	broad.mit.edu	37	chr19	17893782	17893782	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggggaaggatgaggcaccAggcagagccctaagccaaca	14	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17893782	T	T	17893782	1	4	15	0	1	0	0	0	0	0	0	0	5844	203	7	5		5	FCHO1	19	17893782	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	124687	17893782	41235201	2157	33807											
IL12RB1	3594	broad.mit.edu	37	chr19	18170764	18170764	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatccagggccagctcaggGgcaccctcaggtagctctgt	13	13	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18170764	A	A	18170764	2	1	15	1	0	0	0	0	0	0	0	1	7696	1219	43	4		4	IL12RB1	19	18170764	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	276982	18170764	40958219	2158	33808											
ZNF208	7757	broad.mit.edu	37	chr19	22154744	22154744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttgtcacattcttcaCatttgtagggtgtctctcca	8	10	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22154744	A	A	22154744	3	1	15	1	0	0	0	0	1	0	0	0	17892	478	17	3	754	3	ZNF208	19	22154744	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3983980	22154744	36974239	2159	33809											
ZNF208	7757	broad.mit.edu	37	chr19	22155075	22155075	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgaaggctttgccacattCttcacatttgtagggtttct	9	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22155075	G	G	22155075	3	3	15	1	0	0	0	0	1	0	0	0	17892	922	32	4	1085	4	ZNF208	19	22155075	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	331	22155075	36973908	2160	33810											
ZNF208	7757	broad.mit.edu	37	chr19	22155565	22155565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggttgaggaccacttataGgctttgccacattcttcaca	9	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22155565	T	T	22155565	2	4	15	1	0	0	0	0	0	0	0	1	17892	987	35	2		2	ZNF208	19	22155565	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	490	22155565	36973418	2161	33811											
ZNF492	57615	broad.mit.edu	37	chr19	22847748	22847748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctacaaatgtgaagaatGtggcaaagcttttaaccagt	8	8	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22847748	T	T	22847748	3	4	15	1	0	0	0	0	1	0	0	0	18070	1377	48	3	1287	3	ZNF492	19	22847748	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	692183	22847748	36281235	2162	33812											
CCNE1	898	broad.mit.edu	37	chr19	30303884	30303884	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcatgttagtttttgcaGgatccagatgaagaaatggc	11	6	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30303884	A	A	30303884	2	1	15	1	0	0	0	0	0	0	0	1	2950	991	35	4		4	CCNE1	19	30303884	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	7456136	30303884	28825099	2163	33813											
ZNF536	9745	broad.mit.edu	37	chr19	31025939	31025940	+	Intron	DNP	CC	AT	AT													agtgcatccaggggcacagcCcagagaaggaggaggtcccc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	31025940	AT	AT	31025939	1	1	15	0	1	0	0	0	0	0	0	0	18101	638	22	2		2	ZNF536	19	31025939	Intron	DNP	CC	TCGA-05-4410-01A-21D-1855-08	722055	31025939	28103044	2164	33814											
CCDC123	84902	broad.mit.edu	37	chr19	33392059	33392059	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcagcctcccaaagtgcTgggattacaggagtgagcca	12	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33392059	A	A	33392059	1	1	15	0	1	0	0	0	0	0	0	0	2785	1595	55	5		5	CCDC123	19	33392059	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	2366120	33392059	25736924	2165	33815											
KCTD15	79047	broad.mit.edu	37	chr19	34302440	34302440	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccgctcaatggctactgcCggctcaactcggtacaggtg	11	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34302440	G	G	34302440	3	3	15	1	0	0	0	0	1	0	0	0	8172	643	23	4	690	4	KCTD15	19	34302440	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	910381	34302440	24826543	2166	33816											
WDR62	284403	broad.mit.edu	37	chr19	36579885	36579885	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggagttccccagctaggGtcccctgcccatgtggccca	12	15	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36579885	A	A	36579885	1	1	15	0	1	0	0	0	0	0	0	0	17440	1276	44	4		4	WDR62	19	36579885	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2277445	36579885	22549098	2167	33817											
WDR62	284403	broad.mit.edu	37	chr19	36595621	36595621	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagggttgaggggtctcttGagaccgcccggccttggtgg	17	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36595621	C	C	36595621	1	2	15	0	1	0	0	0	0	0	0	0	17440	1305	45	4		4	WDR62	19	36595621	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	15736	36595621	22533362	2168	33818											
ZFP14	57677	broad.mit.edu	37	chr19	36831385	36831385	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacattcataaggtttctcaCcagtgtgaatactttgatgc	7	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36831385	G	G	36831385	3	3	15	1	0	0	0	0	1	0	0	0	17765	507	18	4	262	4	ZFP14	19	36831385	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	235764	36831385	22297598	2169	33819											
ZNF260	339324	broad.mit.edu	37	chr19	37005747	37005747	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgcatagggtttggttcCtgtatgatttttctggtgtc	11	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37005747	T	T	37005747	3	4	15	1	0	0	0	0	1	0	0	0	17928	690	24	4	848	4	ZNF260	19	37005747	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	174362	37005747	22123236	2170	33820											
ZNF527	84503	broad.mit.edu	37	chr19	37869883	37869883	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctcttaaagtatttgacAaacctcagcatgtaattgtt	5	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37869883	T	T	37869883	1	4	15	0	1	0	0	0	0	0	0	0	18095	145	5	5		5	ZNF527	19	37869883	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	864136	37869883	21259100	2171	33821											
RYR1	6261	broad.mit.edu	37	chr19	39071079	39071079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggccttcaacttcttcCgcaagttctacaacaagagc	8	12	3	1	rs118192181		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39071079	A	A	39071079	3	1	15	1	0	0	0	0	1	0	0	0	13879	652	23	1	14983	1	RYR1	19	39071079	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1201196	39071079	20057904	2172	33822											
RYR1	6261	broad.mit.edu	37	chr19	39077919	39077919	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatatatatatgtctcaaGggtttgaagatgtgaccaat	8	4	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39077919	A	A	39077919	1	1	15	0	1	0	0	0	0	0	0	0	13879	1015	35	4		4	RYR1	19	39077919	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	6840	39077919	20051064	2173	33823											
MAP4K1	11184	broad.mit.edu	37	chr19	39103297	39103297	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggctgtagctcggccagttCgatggccgtgatgcccaggg	16	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39103297	A	A	39103297	4	1	15	1	0	0	0	0	0	1	0	0	9351	893	31	3	2040	3	MAP4K1	19	39103297	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	25378	39103297	20025686	2174	33824											
ACTN4	81	broad.mit.edu	37	chr19	39214592	39214592	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actagaaaacagagaagcagCtggaggccatcgaccagctg	12	10	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39214592	T	T	39214592	2	4	15	1	0	0	0	0	0	0	0	1	207	796	28	4		4	ACTN4	19	39214592	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	111295	39214592	19914391	2175	33825											
PSMC4	5704	broad.mit.edu	37	chr19	40480540	40480540	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catttcgagctctacaagcaGgtgaggcggtgcaggtggca	15	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40480540	C	C	40480540	3	2	15	1	0	0	0	0	1	0	0	0	12795	1014	35	4	597	4	PSMC4	19	40480540	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1265948	40480540	18648443	2176	33826											
ZNF780B	163131	broad.mit.edu	37	chr19	40554637	40554637	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgtacaaggtcctctgatCaggctgcaggcactcccact	9	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40554637	A	A	40554637	3	1	15	1	0	0	0	0	1	0	0	0	18282	826	29	3	2437	3	ZNF780B	19	40554637	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	74097	40554637	18574346	2177	33827											
SPTBN4	57731	broad.mit.edu	37	chr19	40995976	40995976	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgcccaccgcccctgtcgCcctagcccaggcccacgcgc	9	23	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40995976	T	T	40995976	1	4	15	0	1	0	0	0	0	0	0	0	15239	754	26	4		4	SPTBN4	19	40995976	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	441339	40995976	18133007	2178	33828											
HNRNPUL1	11100	broad.mit.edu	37	chr19	41782156	41782156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacctgtggtcaggagccCgtgccagctatggggtcaga	14	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41782156	A	A	41782156	3	1	15	1	0	0	0	0	1	0	0	0	7341	652	23	1	757	1	HNRNPUL1	19	41782156	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	786180	41782156	17346827	2179	33829											
CCDC97	90324	broad.mit.edu	37	chr19	41828654	41828654	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaccgcctgccccatccCcatccccaacaaggcagctg	6	22	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41828654	A	A	41828654	1	1	15	0	1	0	0	0	0	0	0	0	2903	638	22	2		2	CCDC97	19	41828654	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	46498	41828654	17300329	2180	33830											
CYP2F1	1572	broad.mit.edu	37	chr19	42012970	42012970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgccgcccgctccttccCtgtgtctttttcaccaaact	5	18	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42012970	A	A	42012970	1	1	15	0	1	0	0	0	0	0	0	0	4204	696	24	2		2	CYP2F1	19	42012970	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	184316	42012970	17116013	2181	33831											
PSG8	440533	broad.mit.edu	37	chr19	43268342	43268342	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaattgtggacaagtagAagaacatccttcccctcaga	9	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43268342	C	C	43268342	2	2	15	1	0	0	0	0	0	0	0	1	12767	233	9	5		5	PSG8	19	43268342	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1255372	43268342	15860641	2182	33832											
PSG6	5675	broad.mit.edu	37	chr19	43520326	43520326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagccaatagctggtgcGtgtgtcacaagacagatgca	12	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520326	T	T	43520326	1	4	15	0	1	0	0	0	0	0	0	0	12765	1160	40	3		3	PSG6	19	43520326	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	251984	43520326	15608657	2183	33833											
PSG4	5672	broad.mit.edu	37	chr19	43699272	43699272	+	Frame_Shift_Del	DEL	C	-	-													ggatcctgttttcaatgggtCgctttaccctgggactgaca							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43699272	-	-	43699272	7	5	15	1	0	1	0	1	0	0	0	0	12763	884	31	0	408	0	PSG4	19	43699272	Frame_Shift_Del	DEL	C	TCGA-05-4410-01A-21D-1855-08	178946	43699272	15429711	2184	33834											
PSG9	5678	broad.mit.edu	37	chr19	43766394	43766394	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacctctcagcccaacccaGtccttaaaagcccatggcag	6	18	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43766394	C	C	43766394	1	2	15	0	1	0	0	0	0	0	0	0	12768	1044	36	4		4	PSG9	19	43766394	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	67122	43766394	15362589	2185	33835											
ZNF283	284349	broad.mit.edu	37	chr19	44351434	44351434	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacttgttcaacatgagagAactcatacagctgaaaaaca	6	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44351434	G	G	44351434	2	3	15	1	0	0	0	0	0	0	0	1	17946	243	9	5		5	ZNF283	19	44351434	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	585040	44351434	14777549	2186	33836											
ZNF221	7638	broad.mit.edu	37	chr19	44469497	44469497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagaaccaagtaactgtGcatccttgtacatgactctt	8	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44469497	T	T	44469497	1	4	15	0	1	0	0	0	0	0	0	0	17901	1334	46	3		3	ZNF221	19	44469497	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	118063	44469497	14659486	2187	33837											
CLPTM1	1209	broad.mit.edu	37	chr19	45496195	45496195	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctccggctcctggcgaccaCtacccctgcgtcccggcccc	10	22	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45496195	G	G	45496195	1	3	15	0	1	0	0	0	0	0	0	0	3586	580	20	4		4	CLPTM1	19	45496195	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	1026698	45496195	13632788	2188	33838											
FOSB	2354	broad.mit.edu	37	chr19	45976256	45976256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccctgaactcgccctccCtcctcgctctgtgaactctt	5	19	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45976256	A	A	45976256	3	1	15	1	0	0	0	0	1	0	0	0	6044	681	24	2	1017	2	FOSB	19	45976256	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	480061	45976256	13152727	2189	33839											
DMWD	1762	broad.mit.edu	37	chr19	46287637	46287638	+	Intron	DNP	CC	TG	TG													agggagccagcccagagtccCcaaagctgctgccaccctgg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	46287638	TG	TG	46287637	1	4	15	0	1	0	0	0	0	0	0	0	4633	638	22	4		4	DMWD	19	46287637	Intron	DNP	CC	TCGA-05-4410-01A-21D-1855-08	311381	46287637	12841346	2190	33840											
DMWD	1762	broad.mit.edu	37	chr19	46287940	46287940	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgacctgggccaacttccttCccctgtctgggcctcggtct	10	16	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46287940	T	T	46287940	3	4	15	1	0	0	0	0	1	0	0	0	4633	864	30	4	96	4	DMWD	19	46287940	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	303	46287940	12841043	2191	33841											
DMWD	1762	broad.mit.edu	37	chr19	46288027	46288027	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagactccccaaatcccaCcactcttgcctctgagtcac	4	19	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46288027	T	T	46288027	1	4	15	0	1	0	0	0	0	0	0	0	4633	522	18	4		4	DMWD	19	46288027	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	87	46288027	12840956	2192	33842											
IGFL1	374918	broad.mit.edu	37	chr19	46733983	46733984	+	Intron	DNP	GG	TT	TT													ccccgctgtcctctcctcctGgctctcctgtcctcatttct							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	46733984	TT	TT	46733983	1	4	15	0	1	0	0	0	0	0	0	0	7656	1363	47	2		2	IGFL1	19	46733983	Intron	DNP	GG	TCGA-05-4410-01A-21D-1855-08	445956	46733983	12395000	2193	33843											
DACT3	147906	broad.mit.edu	37	chr19	47151918	47151918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggccacacgaggccacCgctgccgtctgagtcgctgg	14	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47151918	A	A	47151918	3	1	15	1	0	0	0	0	1	0	0	0	4256	652	23	1	182	1	DACT3	19	47151918	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	417935	47151918	11977065	2194	33844											
PRKD2	25865	broad.mit.edu	37	chr19	47195022	47195022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccaaactgccctgagcCcagcacttcgtcagggaaga	9	15	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47195022	A	A	47195022	3	1	15	1	0	0	0	0	1	0	0	0	12625	623	22	2	992	2	PRKD2	19	47195022	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	43104	47195022	11933961	2195	33845											
GPR77	27202	broad.mit.edu	37	chr19	47844849	47844849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggccccgaactccgcaCtcctggccagggccctgcgg	14	18	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47844849	A	A	47844849	3	1	15	1	0	0	0	0	1	0	0	0	6774	565	20	3	795	3	GPR77	19	47844849	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	649827	47844849	11284134	2196	33846											
ELSPBP1	64100	broad.mit.edu	37	chr19	48519419	48519419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaagtacttacaggagcCaagtgtctgctcagagagtt	14	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48519419	A	A	48519419	1	1	15	0	1	0	0	0	0	0	0	0	5125	609	21	2		2	ELSPBP1	19	48519419	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	674570	48519419	10609564	2197	33847											
PPP1R15A	23645	broad.mit.edu	37	chr19	49376588	49376588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctcctcagccgcgcctGgagccgcctgaggggcctgg	17	16	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49376588	T	T	49376588	3	4	15	1	0	0	0	0	1	0	0	0	12464	1357	47	2	100	2	PPP1R15A	19	49376588	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	857169	49376588	9752395	2198	33848											
PPFIA3	8541	broad.mit.edu	37	chr19	49632191	49632191	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgccaggcccagtccccGggtggggtctcctcggaggt	16	14	1	0	rs140179139	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49632191	T	T	49632191	2	4	15	1	0	0	0	0	0	0	0	1	12407	1103	39	1		1	PPFIA3	19	49632191	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	255603	49632191	9496792	2199	33849											
RCN3	57333	broad.mit.edu	37	chr19	50031594	50031594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcgcccgccctttttgaGcccgaaagcttgcagccaac	8	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50031594	T	T	50031594	1	4	15	0	1	0	0	0	0	0	0	0	13289	986	34	3		3	RCN3	19	50031594	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	399403	50031594	9097389	2200	33850											
CPT1C	126129	broad.mit.edu	37	chr19	50200734	50200734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgactggtgaggtccccCcactccagcccagtaacccc	9	19	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50200734	A	A	50200734	1	1	15	0	1	0	0	0	0	0	0	0	3865	638	22	2		2	CPT1C	19	50200734	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	169140	50200734	8928249	2201	33851											
TSKS	60385	broad.mit.edu	37	chr19	50250163	50250163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagattggaagtagaacgcCtgtggggacagtatgttgga	16	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50250163	A	A	50250163	1	1	15	0	1	0	0	0	0	0	0	0	16751	696	24	2		2	TSKS	19	50250163	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	49429	50250163	8878820	2202	33852											
JOSD2	126119	broad.mit.edu	37	chr19	51013674	51013674	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggctcggctgtgctccCggggcctgggacatgccgtc	18	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51013674	A	A	51013674	2	1	15	1	0	0	0	0	0	0	0	1	8029	639	23	1		1	JOSD2	19	51013674	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	763511	51013674	8115309	2203	33853											
SIGLEC8	27181	broad.mit.edu	37	chr19	51961666	51961666	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttgaaggcgccagggcCgccagggaacgtctgttcct	16	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51961666	A	A	51961666	1	1	15	0	1	0	0	0	0	0	0	0	14427	667	23	1		1	SIGLEC8	19	51961666	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	947992	51961666	7167317	2204	33854											
CEACAM18	729767	broad.mit.edu	37	chr19	51982017	51982017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctaggagcaaagcggcgGggagggggctgggaccatcc	19	10	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51982017	T	T	51982017	1	4	15	0	1	0	0	0	0	0	0	0	3219	1247	43	2		2	CEACAM18	19	51982017	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	20351	51982017	7146966	2205	33855											
SIGLEC12	89858	broad.mit.edu	37	chr19	52000534	52000534	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatccaggtccttccaggtCtggcttcagggattttgttc	10	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52000534	A	A	52000534	1	1	15	0	1	0	0	0	0	0	0	0	14421	928	32	3		3	SIGLEC12	19	52000534	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	18517	52000534	7128449	2206	33856											
ZNF615	284370	broad.mit.edu	37	chr19	52505609	52505609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtcaaggaagtcattcCgctcattttcaccacatagg	8	10	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52505609	A	A	52505609	1	1	15	0	1	0	0	0	0	0	0	0	18167	667	23	1		1	ZNF615	19	52505609	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	505075	52505609	6623374	2207	33857											
ZNF534	147658	broad.mit.edu	37	chr19	52942160	52942160	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaattcaaaccttcaaCgacataggaaaattcatact	5	9	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52942160	T	T	52942160	4	4	15	1	0	0	0	0	0	1	0	0	18100	528	19	4	1500	4	ZNF534	19	52942160	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	436551	52942160	6186823	2208	33858											
ZNF578	147660	broad.mit.edu	37	chr19	53015762	53015762	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatactggagagaaacctTacaaatgtcatgactgtggc	9	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53015762	A	A	53015762	1	1	15	0	1	0	0	0	0	0	0	0	18137	1769	61	5		5	ZNF578	19	53015762	3'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	73602	53015762	6113221	2209	33859											
ZNF611	81856	broad.mit.edu	37	chr19	53207690	53207690	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccacaatcatcacacttgTgaggtttctctcctgtataa	6	11	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53207690	A	A	53207690	1	1	15	0	1	0	0	0	0	0	0	0	18164	1711	59	5		5	ZNF611	19	53207690	3'UTR	SNP	T	TCGA-05-4410-01A-21D-1855-08	191928	53207690	5921293	2210	33860											
VN1R2	317701	broad.mit.edu	37	chr19	53761993	53761993	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttaggggatacaagccaaGatccacagatttgattctca	8	9	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53761993	T	T	53761993	3	4	15	1	0	0	0	0	1	0	0	0	17306	942	33	3	367	3	VN1R2	19	53761993	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	554303	53761993	5366990	2211	33861											
BIRC8	112401	broad.mit.edu	37	chr19	53793907	53793907	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggccagttgtgaaacgaCtgttatctagcttcttcact	9	10	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53793907	A	A	53793907	1	1	15	0	1	0	0	0	0	0	0	0	1446	580	20	3		3	BIRC8	19	53793907	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	31914	53793907	5335076	2212	33862											
ZNF845	91664	broad.mit.edu	37	chr19	53844638	53844638	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaaatcctgggccttggaGttgggaatcttctctgagtc	12	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53844638	A	A	53844638	1	1	15	0	1	0	0	0	0	0	0	0	18320	1044	36	4		4	ZNF845	19	53844638	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	50731	53844638	5284345	2213	33863											
NLRP12	91662	broad.mit.edu	37	chr19	54314336	54314336	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggtctctatcttgatggGgctagcctggtgtcccacgg	15	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54314336	A	A	54314336	3	1	15	1	0	0	0	0	1	0	0	0	10569	1232	43	4	2736	4	NLRP12	19	54314336	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	469698	54314336	4814647	2214	33864											
CACNG6	59285	broad.mit.edu	37	chr19	54502988	54502988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcagtaaaggtgcagagttCctgctccgagttggagccgt	13	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54502988	A	A	54502988	3	1	15	1	0	0	0	0	1	0	0	0	2587	854	30	3	517	3	CACNG6	19	54502988	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	188652	54502988	4625995	2215	33865											
LILRB3	11025	broad.mit.edu	37	chr19	54733675	54733675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgatctcgatctcctgacCtcgtgatccgcccgcctcgg	10	17	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54733675	A	A	54733675	1	1	15	0	1	0	0	0	0	0	0	0	8864	696	24	2		2	LILRB3	19	54733675	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	230687	54733675	4395308	2216	33866											
LILRA2	11027	broad.mit.edu	37	chr19	55098788	55098788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcagcacagccagagaaGcctacaagatgcagccggga	13	12	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55098788	T	T	55098788	3	4	15	1	0	0	0	0	1	0	0	0	8857	971	34	3	1457	3	LILRA2	19	55098788	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	365113	55098788	4030195	2217	33867											
LILRB4	11006	broad.mit.edu	37	chr19	55175173	55175173	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagctgggatctgagggctGaggaaggtcttgggatccag	18	6	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55175173	T	T	55175173	1	4	15	0	1	0	0	0	0	0	0	0	8865	1305	45	3		3	LILRB4	19	55175173	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	76385	55175173	3953810	2218	33868											
KIR2DL1	3802	broad.mit.edu	37	chr19	55282321	55282321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcttcttgctgcaggggGcctggccacatgagggtgag	17	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55282321	T	T	55282321	3	4	15	1	0	0	0	0	1	0	0	0	8387	1203	42	3	61	3	KIR2DL1	19	55282321	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	107148	55282321	3846662	2219	33869											
KIR2DL4	3805	broad.mit.edu	37	chr19	55325168	55325168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtaatgaaccaagagCctgcgggacacagaacagtg	12	10	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55325168	A	A	55325168	3	1	15	1	0	0	0	0	1	0	0	0	8389	739	26	3	860	3	KIR2DL4	19	55325168	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	42847	55325168	3803815	2220	33870											
KIR3DL1	3811	broad.mit.edu	37	chr19	55331374	55331374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcggtcccatgatgcttGcccttgcagggacctacaga	10	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55331374	T	T	55331374	3	4	15	1	0	0	0	0	1	0	0	0	8391	1319	46	3	576	3	KIR3DL1	19	55331374	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	6206	55331374	3797609	2221	33871											
KIR3DL1	3811	broad.mit.edu	37	chr19	55331552	55331552	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacccccaggtggtcatgagGaagataagtgtgggattctt	13	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55331552	T	T	55331552	1	4	15	0	1	0	0	0	0	0	0	0	8391	1189	41	3		3	KIR3DL1	19	55331552	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	178	55331552	3797431	2222	33872											
KIR3DL1	3811	broad.mit.edu	37	chr19	55347305	55347305	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttcaccccaaggtggtcagGacaagcccttgctttctacc	8	15	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55347305	C	C	55347305	1	2	15	0	1	0	0	0	0	0	0	0	8391	1189	41	4		4	KIR3DL1	19	55347305	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	15753	55347305	3781678	2223	33873											
KIR3DL1	3811	broad.mit.edu	37	chr19	55354478	55354478	+	Intron	DEL	G	-	-													agctctgacattgtacgcctGtcttctaccatctccgaact							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55354478	-	-	55354478	6	5	15	0	1	1	0	1	0	0	0	0	8391	1392	48	0		0	KIR3DL1	19	55354478	Intron	DEL	G	TCGA-05-4410-01A-21D-1855-08	7173	55354478	3774505	2224	33874											
C19orf51	352909	broad.mit.edu	37	chr19	55670618	55670618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggcttcaagaggctgggCcaggatgtcaaggggcggag	19	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55670618	A	A	55670618	3	1	15	1	0	0	0	0	1	0	0	0	1952	739	26	3	191	3	C19orf51	19	55670618	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	316140	55670618	3458365	2225	33875											
PTPRH	5794	broad.mit.edu	37	chr19	55713360	55713360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatggaatagacaatcgtctAcattctactgcttactgtcc	6	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55713360	G	G	55713360	1	3	15	0	1	0	0	0	0	0	0	0	12911	406	14	5		5	PTPRH	19	55713360	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	42742	55713360	3415623	2226	33876											
NLRP9	338321	broad.mit.edu	37	chr19	56226411	56226412	+	Intron	DNP	CC	AA	AA													gacattgaagcaaatcatggCcggtcctaccacagctcccg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	56226412	AA	AA	56226411	1	1	15	0	1	0	0	0	0	0	0	0	10579	754	26	3		3	NLRP9	19	56226411	Intron	DNP	CC	TCGA-05-4410-01A-21D-1855-08	513051	56226411	2902572	2227	33877											
NLRP4	147945	broad.mit.edu	37	chr19	56370569	56370569	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcttgaggaaactctgtTtttccgttcaaaatgtcttt	7	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56370569	C	C	56370569	3	2	15	1	0	0	0	0	1	0	0	0	10574	1841	64	5	1816	5	NLRP4	19	56370569	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	144158	56370569	2758414	2228	33878											
NLRP13	126204	broad.mit.edu	37	chr19	56424587	56424587	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacggatatatacgtggtctTtaggccaactgatgttgtcc	10	8	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56424587	A	A	56424587	3	1	15	1	0	0	0	0	1	0	0	0	10570	1841	64	5	2561	5	NLRP13	19	56424587	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	54018	56424587	2704396	2229	33879											
ZNF667	63934	broad.mit.edu	37	chr19	56969679	56969679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacagaagtcagagccacGctctgcatcaacaggaatgc	9	13	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56969679	T	T	56969679	1	4	15	0	1	0	0	0	0	0	0	0	18201	1102	38	3		3	ZNF667	19	56969679	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	545092	56969679	2159304	2230	33880											
AURKC	6795	broad.mit.edu	37	chr19	57744004	57744004	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaggggtgagctctacaagGagctgcagaaaagcgagaaa	14	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57744004	A	A	57744004	3	1	15	1	0	0	0	0	1	0	0	0	1229	1175	41	4	410	4	AURKC	19	57744004	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	774325	57744004	1384979	2231	33881											
ZNF586	54807	broad.mit.edu	37	chr19	58287995	58287995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcagagatgcctgtacCgtgacgtgatgctggagacc	14	10	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58287995	A	A	58287995	3	1	15	1	0	0	0	0	1	0	0	0	18146	652	23	1	127	1	ZNF586	19	58287995	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	543991	58287995	840988	2232	33882											
ZNF587	84914	broad.mit.edu	37	chr19	58370797	58370797	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggtcaaaagggtaacctCattcaacatcagcaaggtca	8	9	5	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58370797	T	T	58370797	2	4	15	1	0	0	0	0	0	0	0	1	18147	813	29	4		4	ZNF587	19	58370797	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	82802	58370797	758186	2233	33883											
ZNF814	730051	broad.mit.edu	37	chr19	58384403	58384403	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttgtgttttgtgaaactGgagctttcagcgaaagattt	10	5	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58384403	A	A	58384403	2	1	15	1	0	0	0	0	0	0	0	1	18305	1335	47	4		4	ZNF814	19	58384403	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	13606	58384403	744580	2234	33884											
SIRPA	140885	broad.mit.edu	37	chr20	1903195	1903195	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggatgatgtgaagctcaccTgccaggtggagcatgacggg	17	8	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1903195	A	A	1903195	3	1	15	1	0	0	0	0	1	0	0	0	14445	1580	55	5	1005	5	SIRPA	20	1903195	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08		1903195	61122325	2235	33885											
SNRPB	6628	broad.mit.edu	37	chr20	2443698	2443698	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatccagctaaggcatcttCtatcaattagcactggtctc	6	11	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2443698	T	T	2443698	1	4	15	0	1	0	0	0	0	0	0	0	14975	928	32	4		4	SNRPB	20	2443698	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	540503	2443698	60581822	2236	33886											
TMC2	117532	broad.mit.edu	37	chr20	2560468	2560468	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggttatttatccaggaaaaGaaagggagatccaggtgtca	12	5	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2560468	C	C	2560468	1	2	15	0	1	0	0	0	0	0	0	0	16108	957	33	4		4	TMC2	20	2560468	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	116770	2560468	60465052	2237	33887											
SIGLEC1	6614	broad.mit.edu	37	chr20	3673254	3673254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgcctgcatgagcccgcGtggccaccaggaatgagagt	15	12	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3673254	T	T	3673254	3	4	15	1	0	0	0	0	1	0	0	0	14418	1145	40	3	1213	3	SIGLEC1	20	3673254	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1112786	3673254	59352266	2238	33888											
C20orf29	55317	broad.mit.edu	37	chr20	3804637	3804637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccacgtggggctttccGcctggcagcagagaaccctt	13	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3804637	T	T	3804637	3	4	15	1	0	0	0	0	1	0	0	0	2130	1087	38	3	302	3	C20orf29	20	3804637	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	131383	3804637	59220883	2239	33889											
LRRN4	164312	broad.mit.edu	37	chr20	6022614	6022614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggggcagtcccctccCgtgcatcgctgtgcggccat	15	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6022614	A	A	6022614	3	1	15	1	0	0	0	0	1	0	0	0	9124	652	23	1	949	1	LRRN4	20	6022614	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2217977	6022614	57002906	2240	33890											
HAO1	54363	broad.mit.edu	37	chr20	7875833	7875833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattcgacaccaagatccCattcaagccatgtttaacag	6	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7875833	A	A	7875833	3	1	15	1	0	0	0	0	1	0	0	0	7017	594	21	2	368	2	HAO1	20	7875833	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1853219	7875833	55149687	2241	33891											
PLCB1	23236	broad.mit.edu	37	chr20	8639329	8639329	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattgagaagtatgaaccCaacaacagcctcgccagaaa	8	10	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8639329	A	A	8639329	2	1	15	1	0	0	0	0	0	0	0	1	12122	581	21	2		2	PLCB1	20	8639329	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	763496	8639329	54386191	2242	33892											
PLCB1	23236	broad.mit.edu	37	chr20	8720964	8720964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattggaaaggaaatatgtgCtacacagcattattctcacc	7	9	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8720964	A	A	8720964	1	1	15	0	1	0	0	0	0	0	0	0	12122	812	28	3		3	PLCB1	20	8720964	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	81635	8720964	54304556	2243	33893											
PLCB4	5332	broad.mit.edu	37	chr20	9402202	9402202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaggggcacttattcaaCcgacaacatcttctttttct	5	11	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9402202	A	A	9402202	1	1	15	0	1	0	0	0	0	0	0	0	12125	522	18	3		3	PLCB4	20	9402202	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	681238	9402202	53623318	2244	33894											
PLCB4	5332	broad.mit.edu	37	chr20	9417852	9417852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacccaccttaattacacaGtgtacaatatctatagcttt	4	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9417852	T	T	9417852	1	4	15	0	1	0	0	0	0	0	0	0	12125	1044	36	3		3	PLCB4	20	9417852	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	15650	9417852	53607668	2245	33895											
PAK7	57144	broad.mit.edu	37	chr20	9561532	9561532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaaatcctctagcaggcCgttgatggaggtttccttgc	11	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9561532	A	A	9561532	3	1	15	1	0	0	0	0	1	0	0	0	11499	652	23	1	1937	1	PAK7	20	9561532	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	143680	9561532	53463988	2246	33896											
MKKS	8195	broad.mit.edu	37	chr20	10393358	10393358	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggtccaagactgcattttCaagagaaaccccataactga	7	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10393358	T	T	10393358	3	4	15	1	0	0	0	0	1	0	0	0	9693	835	29	4	923	4	MKKS	20	10393358	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	831826	10393358	52632162	2247	33897											
SEL1L2	80343	broad.mit.edu	37	chr20	13971225	13971225	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaacacaggcagaaactAggtgattggcccaagagctc	11	10	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13971225	T	T	13971225	1	4	15	0	1	0	0	0	0	0	0	0	14124	435	15	5		5	SEL1L2	20	13971225	5'UTR	SNP	A	TCGA-05-4410-01A-21D-1855-08	3577867	13971225	49054295	2248	33898											
FLRT3	23767	broad.mit.edu	37	chr20	14306824	14306824	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatgccgggctatggccCagtttaagccagctgagtct	11	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14306824	G	G	14306824	2	3	15	1	0	0	0	0	0	0	0	1	5998	581	21	4		4	FLRT3	20	14306824	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	335599	14306824	48718696	2249	33899											
C20orf26	26074	broad.mit.edu	37	chr20	20079314	20079314	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggtggaaggcacagctGttgggttcatgagtgtgtgc	16	6	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20079314	C	C	20079314	3	2	15	1	0	0	0	0	1	0	0	0	2128	1377	48	4	741	4	C20orf26	20	20079314	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	5772490	20079314	42946206	2250	33900											
SSTR4	6754	broad.mit.edu	37	chr20	23017238	23017238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaggaagccctgcaacCagaacccggccgcaagcgca	11	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23017238	A	A	23017238	3	1	15	1	0	0	0	0	1	0	0	0	15318	594	21	2	1120	2	SSTR4	20	23017238	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2937924	23017238	40008282	2251	33901											
CST8	10047	broad.mit.edu	37	chr20	23473740	23473740	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accactcatctgtgacggccTaggcagctctgaacccaaga	9	14	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23473740	A	A	23473740	1	1	15	0	1	0	0	0	0	0	0	0	4012	1537	53	5		5	CST8	20	23473740	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	456502	23473740	39551780	2252	33902											
TMEM90B	79953	broad.mit.edu	37	chr20	24646208	24646208	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggaggaagcaggcatacCgcatgatgctgtacagtaca	13	9	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24646208	A	A	24646208	1	1	15	0	1	0	0	0	0	0	0	0	16342	667	23	1		1	TMEM90B	20	24646208	3'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	1172468	24646208	38379312	2253	33903											
PYGB	5834	broad.mit.edu	37	chr20	25262803	25262803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtcccgggccccaccCgtgcctgtggagatgcctgg	16	14	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25262803	A	A	25262803	1	1	15	0	1	0	0	0	0	0	0	0	12968	667	23	1		1	PYGB	20	25262803	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	616595	25262803	37762717	2254	33904											
BPIL3	128859	broad.mit.edu	37	chr20	31626598	31626598	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttagttaaactcagagcgTtaagtattgtgatgaaggga	11	3	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31626598	G	G	31626598	1	3	15	0	1	0	0	0	0	0	0	0	1502	1740	60	5		5	BPIL3	20	31626598	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	6363795	31626598	31398922	2255	33905											
CBFA2T2	9139	broad.mit.edu	37	chr20	32210976	32210976	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgctcgggcggccaagcAgaccccatcccagtacctgg	12	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32210976	T	T	32210976	3	4	15	1	0	0	0	0	1	0	0	0	2723	188	7	5	649	5	CBFA2T2	20	32210976	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	584378	32210976	30814544	2256	33906											
EPB41L1	2036	broad.mit.edu	37	chr20	34797802	34797802	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggggcctgctccaccccGgatatgccccagtttgaggt	13	14	0	1	rs142392996		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34797802	T	T	34797802	2	4	15	1	0	0	0	0	0	0	0	1	5194	1103	39	1		1	EPB41L1	20	34797802	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2586826	34797802	28227718	2257	33907											
RBL1	5933	broad.mit.edu	37	chr20	35661274	35661274	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctctccagcatcatttgCgacacctgaatgtataagca	7	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35661274	T	T	35661274	3	4	15	1	0	0	0	0	1	0	0	0	13217	768	27	4	1067	4	RBL1	20	35661274	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	863472	35661274	27364246	2258	33908											
C20orf132	140699	broad.mit.edu	37	chr20	35731304	35731304	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggaaatgaatgaaggtcTagatagcaaaaagcttacat	10	4	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35731304	A	A	35731304	1	1	15	0	1	0	0	0	0	0	0	0	2108	1537	53	5		5	C20orf132	20	35731304	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	70030	35731304	27294216	2259	33909											
C20orf132	140699	broad.mit.edu	37	chr20	35802514	35802514	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactacttcttcctgactaCagatcctaggaataaagagg	7	10	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35802514	T	T	35802514	3	4	15	1	0	0	0	0	1	0	0	0	2108	478	17	4	2965	4	C20orf132	20	35802514	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	71210	35802514	27223006	2260	33910											
SRC	6714	broad.mit.edu	37	chr20	36028466	36028466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagatcctggatccctgtGtggtaggagttggggggctc	18	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36028466	T	T	36028466	1	4	15	0	1	0	0	0	0	0	0	0	15252	1392	48	3		3	SRC	20	36028466	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	225952	36028466	26997054	2261	33911											
BPI	671	broad.mit.edu	37	chr20	36937289	36937289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctcatgtgtgcacctaGgagtatatgaaattatatga	9	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36937289	T	T	36937289	1	4	15	0	1	0	0	0	0	0	0	0	1499	1015	35	2		2	BPI	20	36937289	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	908823	36937289	26088231	2262	33912											
LPIN3	64900	broad.mit.edu	37	chr20	39984671	39984671	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccgcctctcctccgatcaGatcgtaagtgtgggttgtct	10	13	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39984671	A	A	39984671	2	1	15	1	0	0	0	0	0	0	0	1	9007	933	33	4		4	LPIN3	20	39984671	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	3047382	39984671	23040849	2263	33913											
PTPRT	11122	broad.mit.edu	37	chr20	40710507	40710507	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctggctgttggagaacagtCcttgggatactcaccagggt	13	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40710507	G	G	40710507	1	3	15	0	1	0	0	0	0	0	0	0	12920	870	30	4		4	PTPRT	20	40710507	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	725836	40710507	22315013	2264	33914											
HNF4A	3172	broad.mit.edu	37	chr20	43052943	43052943	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggagtggggactccccagGagacaggcctcacacagtga	14	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43052943	C	C	43052943	1	2	15	0	1	0	0	0	0	0	0	0	7320	1174	41	4		4	HNF4A	20	43052943	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2342436	43052943	19972577	2265	33915											
HNF4A	3172	broad.mit.edu	37	chr20	43058194	43058194	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accccacagccctcaccgccAggtggctcagggtctgagcc	11	18	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43058194	T	T	43058194	2	4	15	1	0	0	0	0	0	0	0	1	7320	175	7	5		5	HNF4A	20	43058194	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	5251	43058194	19967326	2266	33916											
RIMS4	140730	broad.mit.edu	37	chr20	43385559	43385559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggaggactttgccctgggGactctcaggaaacagcagca	13	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43385559	T	T	43385559	3	4	15	1	0	0	0	0	1	0	0	0	13481	1174	41	3	246	3	RIMS4	20	43385559	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	327365	43385559	19639961	2267	33917											
RIMS4	140730	broad.mit.edu	37	chr20	43385807	43385807	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catggggtctggggaggacgCaccaggacacatggggggtg	20	8	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43385807	G	G	43385807	1	3	15	0	1	0	0	0	0	0	0	0	13481	725	25	4		4	RIMS4	20	43385807	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	248	43385807	19639713	2268	33918											
SPINLW1	57119	broad.mit.edu	37	chr20	44171541	44171541	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagttgaaaactcagtgtGcccactccagaaataaacag	8	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44171541	T	T	44171541	1	4	15	0	1	0	0	0	0	0	0	0	15185	1334	46	3		3	SPINLW1	20	44171541	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	785734	44171541	18853979	2269	33919											
ZMYND8	23613	broad.mit.edu	37	chr20	45976695	45976695	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagagcaaattatgttcaTgtttaggaaggctgagaact	10	5	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45976695	C	C	45976695	1	2	15	0	1	0	0	0	0	0	0	0	17837	1479	51	5		5	ZMYND8	20	45976695	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	1805154	45976695	17048825	2270	33920											
NCOA3	8202	broad.mit.edu	37	chr20	46281260	46281260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgatgcaacacccgcagGctgcatccatctatcagtcc	7	16	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46281260	T	T	46281260	3	4	15	1	0	0	0	0	1	0	0	0	10325	1203	42	3	4161	3	NCOA3	20	46281260	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	304565	46281260	16744260	2271	33921											
TSHZ2	128553	broad.mit.edu	37	chr20	51870809	51870809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatatggacaaagaggatgCtcaaaaggttctgaaatgta	12	4	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51870809	A	A	51870809	3	1	15	1	0	0	0	0	1	0	0	0	16749	797	28	3	818	3	TSHZ2	20	51870809	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	5589549	51870809	11154711	2272	33922											
BCAS1	8537	broad.mit.edu	37	chr20	52583432	52583432	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggtttcctatactggaaGtaaggggcttaccatttgtc	10	7	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52583432	A	A	52583432	1	1	15	0	1	0	0	0	0	0	0	0	1355	1044	36	4		4	BCAS1	20	52583432	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	712623	52583432	10442088	2273	33923											
GCNT7	140687	broad.mit.edu	37	chr20	55099763	55099763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtggcctcagctcagggcCtctgtgacatcaccaagggc	13	13	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55099763	A	A	55099763	1	1	15	0	1	0	0	0	0	0	0	0	6366	696	24	2		2	GCNT7	20	55099763	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2516331	55099763	7925757	2274	33924											
PCK1	5105	broad.mit.edu	37	chr20	56138753	56138753	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggttgagtgcgtcggggatGacattgcctggatgaagttt	16	5	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56138753	A	A	56138753	3	1	15	1	0	0	0	0	1	0	0	0	11675	1290	45	4	949	4	PCK1	20	56138753	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1038990	56138753	6886767	2275	33925											
ZBP1	81030	broad.mit.edu	37	chr20	56189876	56189876	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgctcagcagagcacccAgcaaagaccaagcactagtg	10	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56189876	G	G	56189876	1	3	15	0	1	0	0	0	0	0	0	0	17647	203	7	5		5	ZBP1	20	56189876	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	51123	56189876	6835644	2276	33926											
ZBP1	81030	broad.mit.edu	37	chr20	56191346	56191346	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaccctcgccttcaggatcAgtcccgcccaagcaccaggt	10	17	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56191346	T	T	56191346	2	4	15	1	0	0	0	0	0	0	0	1	17647	175	7	5		5	ZBP1	20	56191346	Silent	SNP	A	TCGA-05-4410-01A-21D-1855-08	1470	56191346	6834174	2277	33927											
CDH4	1002	broad.mit.edu	37	chr20	60348144	60348144	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggccccagcaccagaacgCcaacgggctgaggcggcgca	15	15	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60348144	G	G	60348144	3	3	15	1	0	0	0	0	1	0	0	0	3142	739	26	4	496	4	CDH4	20	60348144	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	4156798	60348144	2677376	2278	33928											
CDH4	1002	broad.mit.edu	37	chr20	60508075	60508075	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgtcatgtggatgaagCggcgagagaaggagcgccac	16	7	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60508075	A	A	60508075	2	1	15	1	0	0	0	0	0	0	0	1	3142	759	27	3		3	CDH4	20	60508075	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	159931	60508075	2517445	2279	33929											
DIDO1	11083	broad.mit.edu	37	chr20	61537159	61537159	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacacaaagctgcaactccCagtcctggacaggcccaggg	10	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61537159	T	T	61537159	1	4	15	0	1	0	0	0	0	0	0	0	4562	581	21	4		4	DIDO1	20	61537159	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1029084	61537159	1488361	2280	33930											
PRIC285	85441	broad.mit.edu	37	chr20	62199965	62199965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagtcgggcaccaccagCtgctcctcaggcagtgtgtc	13	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62199965	A	A	62199965	3	1	15	1	0	0	0	0	1	0	0	0	12591	796	28	3	6556	3	PRIC285	20	62199965	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	662806	62199965	825555	2281	33931											
RTEL1	51750	broad.mit.edu	37	chr20	62294070	62294070	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgcgctcccgctgggctAgggtttgaagttcactgggg	17	10	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62294070	G	G	62294070	1	3	15	0	1	0	0	0	0	0	0	0	13831	435	15	5		5	RTEL1	20	62294070	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	94105	62294070	731450	2282	33932											
NPBWR2	2832	broad.mit.edu	37	chr20	62738221	62738221	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgatttgcgccctgggcaGgtgggaggtgccttggagtt	18	8	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62738221	T	T	62738221	1	4	15	0	1	0	0	0	0	0	0	0	10664	1015	35	2		2	NPBWR2	20	62738221	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	444151	62738221	287299	2283	33933											
TPTE	7179	broad.mit.edu	37	chr21	10941907	10941907	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcagataaagacccttaCcttgattggatttctataga	7	7	2	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10941907	T	T	10941907	5	4	15	1	0	0	0	0	0	0	1	0	16554	521	18	4	903	4	TPTE	21	10941907	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08		10941907	37187988	2284	33934											
TPTE	7179	broad.mit.edu	37	chr21	10971741	10971741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctagttgtctctcctgcCcaagagttgcggccaagtag	10	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10971741	A	A	10971741	1	1	15	0	1	0	0	0	0	0	0	0	16554	638	22	2		2	TPTE	21	10971741	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	29834	10971741	37158154	2285	33935											
TPTE	7179	broad.mit.edu	37	chr21	10996118	10996118	+	RNA	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccagttcgacttctttgcCgcaccataaatccaccaata	5	15	1	0	rs145516119	by1000genomes	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10996118	T	T	10996118	1	4	15	0	1	0	0	0	0	0	0	0	16554	667	23	4		4	TPTE	21	10996118	RNA	SNP	C	TCGA-05-4410-01A-21D-1855-08	24377	10996118	37133777	2286	33936											
SAMSN1	64092	broad.mit.edu	37	chr21	15889139	15889139	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacttcataaagtaccaagcActtctatagtctagctgaat	5	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15889139	C	C	15889139	1	2	15	0	1	0	0	0	0	0	0	0	13941	174	6	5		5	SAMSN1	21	15889139	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	4893021	15889139	32240756	2287	33937											
TMPRSS15	5651	broad.mit.edu	37	chr21	19698799	19698799	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttgctttaaaccctcctCttgccaacacatcgttagtg	6	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19698799	T	T	19698799	3	4	15	1	0	0	0	0	1	0	0	0	16369	913	32	4	1228	4	TMPRSS15	21	19698799	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3809660	19698799	28431096	2288	33938											
NCAM2	4685	broad.mit.edu	37	chr21	22881254	22881254	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaattcttgtggtaacagaCgtcagctgcttctttattcg	8	9	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22881254	T	T	22881254	2	4	15	1	0	0	0	0	0	0	0	1	10298	535	19	4		4	NCAM2	21	22881254	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	3182455	22881254	25248641	2289	33939											
JAM2	58494	broad.mit.edu	37	chr21	27056274	27056274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccaaggtacagtatcttaCtgattttcacaggctgtatt	7	8	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27056274	A	A	27056274	1	1	15	0	1	0	0	0	0	0	0	0	8013	580	20	3		3	JAM2	21	27056274	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	4175020	27056274	21073621	2290	33940											
ADAMTS1	9510	broad.mit.edu	37	chr21	28210911	28210911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagaggtggaatctgggCtacatggagtaccatctaca	12	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28210911	A	A	28210911	3	1	15	1	0	0	0	0	1	0	0	0	255	797	28	3	860	3	ADAMTS1	21	28210911	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1154637	28210911	19918984	2291	33941											
ADAMTS5	11096	broad.mit.edu	37	chr21	28337778	28337778	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accttcaccacggccaggcgGatgtggttctcgatgctagc	12	13	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28337778	C	C	28337778	3	2	15	1	0	0	0	0	1	0	0	0	269	1164	41	4	1891	4	ADAMTS5	21	28337778	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	126867	28337778	19792117	2292	33942											
GRIK1	2897	broad.mit.edu	37	chr21	31023525	31023525	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaatgatggatgacacGtgagggttgtcaatgttaag	12	5	2	3	rs146591187		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31023525	A	A	31023525	2	1	15	1	0	0	0	0	0	0	0	1	6839	1136	40	4		4	GRIK1	21	31023525	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	2685747	31023525	17106370	2293	33943											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654363	31654363	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaacctgggagttgtatttGaacttaatgtaacaagattc	8	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31654363	C	C	31654363	1	2	15	0	1	0	0	0	0	0	0	0	8614	1305	45	4		4	KRTAP24-1	21	31654363	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	630838	31654363	16475532	2294	33944											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31914007	31914007	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagaatccatatccttcaCggcatgatgggcggcagcag	12	11	1	2	rs146590456		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31914007	T	T	31914007	3	4	15	1	0	0	0	0	1	0	0	0	8604	536	19	4	34	4	KRTAP19-6	21	31914007	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	259644	31914007	16215888	2295	33945											
KRTAP19-7	337974	broad.mit.edu	37	chr21	31933543	31933543	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccacagctatagccataGcccaggccaccgaatcctcc	6	18	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31933543	A	A	31933543	2	1	15	1	0	0	0	0	0	0	0	1	8605	958	34	4		4	KRTAP19-7	21	31933543	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	19536	31933543	16196352	2296	33946											
KRTAP21-2	337978	broad.mit.edu	37	chr21	32119316	32119317	+	Missense_Mutation	DNP	CA	TC	TC													gtagcaaagtggtcggtagcCacagcagctagagctgtatc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	32119317	TC	TC	32119316	3	4	15	1	0	0	0	0	1	0	0	0	8610	594	21	4	48	4	KRTAP21-2	21	32119316	Missense_Mutation	DNP	CA	TCGA-05-4410-01A-21D-1855-08	185773	32119316	16010579	2297	33947											
SON	6651	broad.mit.edu	37	chr21	34924752	34924752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgatgtcagcttatgaacGctccatgatgtccccaatgg	9	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34924752	T	T	34924752	3	4	15	1	0	0	0	0	1	0	0	0	15040	1087	38	3	3225	3	SON	21	34924752	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2805436	34924752	13205143	2298	33948											
DOPEY2	9980	broad.mit.edu	37	chr21	37652539	37652539	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgttttgaatcaaactatCatccactgcaaatttaattg	4	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37652539	T	T	37652539	1	4	15	0	1	0	0	0	0	0	0	0	4748	841	29	4		4	DOPEY2	21	37652539	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2727787	37652539	10477356	2299	33949											
MX2	4600	broad.mit.edu	37	chr21	42767731	42767731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagactcttcaggaaaGctctggaattagactccatg	11	8	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42767731	T	T	42767731	1	4	15	0	1	0	0	0	0	0	0	0	10092	986	34	3		3	MX2	21	42767731	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	5115192	42767731	5362164	2300	33950											
MX1	4599	broad.mit.edu	37	chr21	42811689	42811689	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccctggagatcagctccCgagatgtcccggatctgact	10	14	3	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42811689	A	A	42811689	2	1	15	1	0	0	0	0	0	0	0	1	10091	644	23	1		1	MX1	21	42811689	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	43958	42811689	5318206	2301	33951											
PRDM15	63977	broad.mit.edu	37	chr21	43223078	43223078	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctgctccagagtcagctCaggctgcagaaaaatcggtt	10	12	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43223078	A	A	43223078	4	1	15	1	0	0	0	0	0	1	0	0	12562	835	29	3	696	3	PRDM15	21	43223078	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	411389	43223078	4906817	2302	33952											
UBASH3A	53347	broad.mit.edu	37	chr21	43838478	43838478	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccaatgtaaatctttgctCgagacgtgaaacccctttgc	7	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43838478	A	A	43838478	1	1	15	0	1	0	0	0	0	0	0	0	16965	899	31	3		3	UBASH3A	21	43838478	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	615400	43838478	4291417	2303	33953											
RRP1B	23076	broad.mit.edu	37	chr21	45111287	45111287	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctccactgcacttgcgtcActccttttgttcctgttatt	6	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45111287	T	T	45111287	1	4	15	0	1	0	0	0	0	0	0	0	13799	174	6	5		5	RRP1B	21	45111287	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	1272809	45111287	3018608	2304	33954											
PWP2	5822	broad.mit.edu	37	chr21	45535470	45535470	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagagttcagaggggccgtCggtgccactggtccctggat	15	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45535470	A	A	45535470	1	1	15	0	1	0	0	0	0	0	0	0	12952	899	31	3		3	PWP2	21	45535470	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	424183	45535470	2594425	2305	33955											
POFUT2	23275	broad.mit.edu	37	chr21	46689913	46689913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcccaggtaggggccccCtagcgcggagcccagcttga	14	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46689913	A	A	46689913	3	1	15	1	0	0	0	0	1	0	0	0	12279	681	24	2	587	2	POFUT2	21	46689913	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1154443	46689913	1439982	2306	33956											
COL18A1	80781	broad.mit.edu	37	chr21	46875463	46875463	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatggctccctacccctgtGgctgccacatcctgctgctg	10	17	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46875463	A	A	46875463	3	1	15	1	0	0	0	0	1	0	0	0	3707	1348	47	4	135	4	COL18A1	21	46875463	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	185550	46875463	1254432	2307	33957											
COL6A1	1291	broad.mit.edu	37	chr21	47409706	47409706	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggagaaggtgagtgaggctcGacctcggagctggtctctcc	16	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47409706	C	C	47409706	1	2	15	0	1	0	0	0	0	0	0	0	3731	1073	37	4		4	COL6A1	21	47409706	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	534243	47409706	720189	2308	33958											
COL6A1	1291	broad.mit.edu	37	chr21	47410292	47410292	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcgttttcccgcctcacagGgagagaagggcaagcgtggc	14	11	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47410292	C	C	47410292	3	2	15	1	0	0	0	0	1	0	0	0	3731	1246	43	4	1008	4	COL6A1	21	47410292	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	586	47410292	719603	2309	33959											
COL6A2	1292	broad.mit.edu	37	chr21	47545032	47545032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggagggtggcagcgaGgttggtagggacaggacccg	23	6	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47545032	T	T	47545032	1	4	15	0	1	0	0	0	0	0	0	0	3732	1015	35	2		2	COL6A2	21	47545032	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	134740	47545032	584863	2310	33960											
LSS	4047	broad.mit.edu	37	chr21	47611049	47611049	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcaagggctctctcagggTacagctgggagaagcggccg	16	11	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47611049	A	A	47611049	3	1	15	1	0	0	0	0	1	0	0	0	9152	1638	57	5	34	5	LSS	21	47611049	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	66017	47611049	518846	2311	33961											
LSS	4047	broad.mit.edu	37	chr21	47630707	47630707	+	Intron	SNP	C	G	G													cagatgcagcccctcccactCccagccactgcctccaggat							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47630707	G	G	47630707	1	3	15	0	1	0	0	0	0	0	0	0	9152	870	30	4		4	LSS	21	47630707	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	19658	47630707	499188	2312	33962	195	2									
LSS	4047	broad.mit.edu	37	chr21	47630709	47630709	+	Intron	SNP	C	A	A													gatgcagcccctcccactccCagccactgcctccaggatcc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47630709	A	A	47630709	1	1	15	0	1	0	0	0	0	0	0	0	9152	609	21	2		2	LSS	21	47630709	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2	47630709	499186	2313	33963	195	2									
PCNT	5116	broad.mit.edu	37	chr21	47768970	47768970	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaagatttatgtttagaAaatctacgcaaagaactgtc	7	5	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47768970	T	T	47768970	3	4	15	1	0	0	0	0	1	0	0	0	11684	11	1	5	1103	5	PCNT	21	47768970	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	138261	47768970	360925	2314	33964											
DIP2A	23181	broad.mit.edu	37	chr21	47977571	47977571	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtccctgtggctgtcgGccgtcagccagtacaaggcc	13	14	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47977571	A	A	47977571	3	1	15	1	0	0	0	0	1	0	0	0	4567	1203	42	4	3938	4	DIP2A	21	47977571	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	208601	47977571	152324	2315	33965											
CCT8L2	150160	broad.mit.edu	37	chr22	17072298	17072298	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactccgcagcccctgggtGgtggctcccctgagaaccac	12	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17072298	T	T	17072298	2	4	15	1	0	0	0	0	0	0	0	1	2991	1335	47	2		2	CCT8L2	22	17072298	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08		17072298	34232268	2316	33966											
GAB4	128954	broad.mit.edu	37	chr22	17468824	17468824	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgtgggggtcactgcCcccactggccatagtagccc	12	15	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17468824	T	T	17468824	1	4	15	0	1	0	0	0	0	0	0	0	6211	638	22	4		4	GAB4	22	17468824	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	396526	17468824	33835742	2317	33967											
IL17RA	23765	broad.mit.edu	37	chr22	17589502	17589502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggccggggggcgcctGtgcggctgcgctgcgaccac	18	15	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17589502	T	T	17589502	3	4	15	1	0	0	0	0	1	0	0	0	7709	1377	48	3	1443	3	IL17RA	22	17589502	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	120678	17589502	33715064	2318	33968											
BCL2L13	23786	broad.mit.edu	37	chr22	18138476	18138476	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggagcctcaccagccaattCaatggcgtcctcttctactg	8	14	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18138476	G	G	18138476	1	3	15	0	1	0	0	0	0	0	0	0	1376	841	29	4		4	BCL2L13	22	18138476	5'UTR	SNP	C	TCGA-05-4410-01A-21D-1855-08	548974	18138476	33166090	2319	33969											
BID	637	broad.mit.edu	37	chr22	18226769	18226769	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcatccctgaggctggaaCcgttgttgacctgaggggaa	13	10	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18226769	T	T	18226769	3	4	15	1	0	0	0	0	1	0	0	0	1436	507	18	4	580	4	BID	22	18226769	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	88293	18226769	33077797	2320	33970											
TUBA8	51807	broad.mit.edu	37	chr22	18566032	18566032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccattgattatgctgttaGtgatgggtgtgtcgtgggga	15	5	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18566032	T	T	18566032	1	4	15	0	1	0	0	0	0	0	0	0	16876	1044	36	3		3	TUBA8	22	18566032	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	339263	18566032	32738534	2321	33971											
TBX1	6899	broad.mit.edu	37	chr22	19751664	19751664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacatgcacgaccccaccCcgtgccgctccaggtacgcc	8	21	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19751664	A	A	19751664	1	1	15	0	1	0	0	0	0	0	0	0	15772	638	22	2		2	TBX1	22	19751664	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1185632	19751664	31552902	2322	33972											
TXNRD2	10587	broad.mit.edu	37	chr22	19864759	19864759	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcataggaagccccacaccTgcacatgggggatgggggag	16	11	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19864759	A	A	19864759	5	1	15	1	0	0	0	0	0	0	1	0	16934	1594	55	5	134	5	TXNRD2	22	19864759	Splice_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	113095	19864759	31439807	2323	33973											
PI4KA	5297	broad.mit.edu	37	chr22	21152932	21152932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacggagctggccttcacaCtgatctgctggaagaggttc	12	11	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21152932	A	A	21152932	3	1	15	1	0	0	0	0	1	0	0	0	11968	565	20	3	4416	3	PI4KA	22	21152932	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1288173	21152932	30151634	2324	33974											
LZTR1	8216	broad.mit.edu	37	chr22	21343120	21343120	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catggggccacggtgtacagTgacaagctgtggatctttgc	14	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21343120	C	C	21343120	2	2	15	1	0	0	0	0	0	0	0	1	9225	1693	59	5		5	LZTR1	22	21343120	Silent	SNP	T	TCGA-05-4410-01A-21D-1855-08	190188	21343120	29961446	2325	33975											
ZNF280A	129025	broad.mit.edu	37	chr22	22868570	22868570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctatttcctccttcaacGtcaaaaactgtagccggcac	6	14	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22868570	A	A	22868570	3	1	15	1	0	0	0	0	1	0	0	0	17940	1145	40	4	247	4	ZNF280A	22	22868570	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1525450	22868570	28435996	2326	33976											
GGT1	2678	broad.mit.edu	37	chr22	25023491	25023491	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatctcctactacaagccCgagttctacacgccggatga	8	15	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25023491	A	A	25023491	2	1	15	1	0	0	0	0	0	0	0	1	6425	639	23	1		1	GGT1	22	25023491	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	2154921	25023491	26281075	2327	33977											
TMEM211	255349	broad.mit.edu	37	chr22	25334188	25334188	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctttgggggccacagcccAagacaggaggaaaattgcat	12	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25334188	G	G	25334188	3	3	15	1	0	0	0	0	1	0	0	0	16258	130	5	5	342	5	TMEM211	22	25334188	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	310697	25334188	25970378	2328	33978											
MYO18B	84700	broad.mit.edu	37	chr22	26219709	26219709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagctcctggggatacaCcagcattctttaactttttt	8	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26219709	A	A	26219709	1	1	15	0	1	0	0	0	0	0	0	0	10160	522	18	3		3	MYO18B	22	26219709	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	885521	26219709	25084857	2329	33979											
SEZ6L	23544	broad.mit.edu	37	chr22	26688935	26688935	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacactcccccagaggccaGaacccggggagcctgggcct	12	17	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26688935	T	T	26688935	4	4	15	1	0	0	0	0	0	1	0	0	14256	943	33	3	664	3	SEZ6L	22	26688935	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	469226	26688935	24615631	2330	33980											
ASPHD2	57168	broad.mit.edu	37	chr22	26839173	26839173	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttgctccgggacgatgaGagtatttcccatgctggagt	12	9	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26839173	C	C	26839173	1	2	15	0	1	0	0	0	0	0	0	0	1059	957	33	4		4	ASPHD2	22	26839173	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	150238	26839173	24465393	2331	33981											
SRRD	402055	broad.mit.edu	37	chr22	26882066	26882066	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatggtagggattgtggggCagaaaagagaatcagtcctc	14	6	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26882066	T	T	26882066	1	4	15	0	1	0	0	0	0	0	0	0	15285	725	25	4		4	SRRD	22	26882066	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	42893	26882066	24422500	2332	33982											
TFIP11	24144	broad.mit.edu	37	chr22	26902740	26902740	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatcctgcaatagagactaCcgtttttagcttccttggtc	7	11	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26902740	T	T	26902740	5	4	15	1	0	0	0	0	0	0	1	0	15930	521	18	4	2193	4	TFIP11	22	26902740	Splice_Site	SNP	C	TCGA-05-4410-01A-21D-1855-08	20674	26902740	24401826	2333	33983											
CRYBB1	1414	broad.mit.edu	37	chr22	27012132	27012132	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggaggcagttccgccGccttggcgctggtaataggc	14	13	0	0	rs144920095	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27012132	C	C	27012132	3	2	15	1	0	0	0	0	1	0	0	0	3942	1087	38	4	626	4	CRYBB1	22	27012132	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	109392	27012132	24292434	2334	33984											
LIF	3976	broad.mit.edu	37	chr22	30640878	30640878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatggggagggggctccCcgccccatgtttccagtgca	16	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30640878	A	A	30640878	3	1	15	1	0	0	0	0	1	0	0	0	8851	623	22	2	552	2	LIF	22	30640878	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	3628746	30640878	20663688	2335	33985											
GAL3ST1	9514	broad.mit.edu	37	chr22	30953228	30953228	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccccacctacacccatcatCtgcccagctgggccactcac	5	22	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30953228	A	A	30953228	1	1	15	0	1	0	0	0	0	0	0	0	6259	928	32	3		3	GAL3ST1	22	30953228	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	312350	30953228	20351338	2336	33986											
PES1	23481	broad.mit.edu	37	chr22	30974931	30974931	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcactctcctcctcctGggccagccgctgcttatcct	8	19	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30974931	A	A	30974931	4	1	15	1	0	0	0	0	0	1	0	0	11827	1357	47	4	198	4	PES1	22	30974931	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	21703	30974931	20329635	2337	33987											
MORC2	22880	broad.mit.edu	37	chr22	31342403	31342403	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcttccttcttggtgaaCaggataaaatccttcccaat	7	10	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31342403	A	A	31342403	2	1	15	1	0	0	0	0	0	0	0	1	9796	465	17	3		3	MORC2	22	31342403	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	367472	31342403	19962163	2338	33988											
PLA2G3	50487	broad.mit.edu	37	chr22	31533819	31533819	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggcgcttggaccctttctGatgtggtggccccttccgaa	14	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31533819	C	C	31533819	3	2	15	1	0	0	0	0	1	0	0	0	12095	1299	45	4	602	4	PLA2G3	22	31533819	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	191416	31533819	19770747	2339	33989											
PLA2G3	50487	broad.mit.edu	37	chr22	31534755	31534755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcagcggtcatgttccCggcaacagagatcaggtccc	14	12	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31534755	A	A	31534755	3	1	15	1	0	0	0	0	1	0	0	0	12095	652	23	1	1008	1	PLA2G3	22	31534755	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	936	31534755	19769811	2340	33990											
PIK3IP1	113791	broad.mit.edu	37	chr22	31688260	31688260	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaagattgtaatctcaCctccagatccataggcttct	7	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31688260	T	T	31688260	1	4	15	0	1	0	0	0	0	0	0	0	12012	521	18	4		4	PIK3IP1	22	31688260	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	153505	31688260	19616306	2341	33991											
SYN3	8224	broad.mit.edu	37	chr22	33327485	33327485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgaagaataaagcaaagCaaaaaaggattcatcaaata	7	6	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33327485	A	A	33327485	1	1	15	0	1	0	0	0	0	0	0	0	15561	725	25	3		3	SYN3	22	33327485	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1639225	33327485	17977081	2342	33992											
LARGE	9215	broad.mit.edu	37	chr22	33777775	33777775	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaaagatgaaaagcatacTcattctgctctcctgtgccc	6	13	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33777775	G	G	33777775	1	3	15	0	1	0	0	0	0	0	0	0	8699	1566	54	5		5	LARGE	22	33777775	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	450290	33777775	17526791	2343	33993											
HMOX1	3162	broad.mit.edu	37	chr22	35789515	35789515	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccactcaacacccgctcccAggctccgcttctccgatggg	8	20	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35789515	T	T	35789515	3	4	15	1	0	0	0	0	1	0	0	0	7310	188	7	5	809	5	HMOX1	22	35789515	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	2011740	35789515	15515051	2344	33994											
APOL4	80832	broad.mit.edu	37	chr22	36595486	36595486	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctatgggcaaagggaggcttGaacagctgggcctctgcaga	15	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36595486	C	C	36595486	1	2	15	0	1	0	0	0	0	0	0	0	810	1305	45	4		4	APOL4	22	36595486	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	805971	36595486	14709080	2345	33995											
APOL2	23780	broad.mit.edu	37	chr22	36623735	36623736	+	In_Frame_Ins	INS	-	GGG	GGG													agattcgcccaatgatatgcINSgggggtggggcatacgctcc							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGG	36623736	GGG	GGG	36623735	7	5	15	1	0	1	1	0	0	0	0	0	808	755	27	0	288	0	APOL2	22	36623735	In_Frame_Ins	INS	-	TCGA-05-4410-01A-21D-1855-08	28249	36623735	14680831	2346	33996											
CSF2RB	1439	broad.mit.edu	37	chr22	37325610	37325610	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcttgggaggtaggaacCacggccagctctgccccagc	13	14	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37325610	T	T	37325610	1	4	15	0	1	0	0	0	0	0	0	0	3969	609	21	4		4	CSF2RB	22	37325610	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	701875	37325610	13978956	2347	33997											
KCNJ4	3761	broad.mit.edu	37	chr22	38822693	38822693	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccccaccttcctccagaagGtccacggagccagggttggc	11	17	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38822693	C	C	38822693	1	2	15	0	1	0	0	0	0	0	0	0	8123	1276	44	4		4	KCNJ4	22	38822693	3'UTR	SNP	G	TCGA-05-4410-01A-21D-1855-08	1497083	38822693	12481873	2348	33998											
DDX17	10521	broad.mit.edu	37	chr22	38882078	38882078	+	Frame_Shift_Del	DEL	C	-	-													ggctgtggctgctgcccagaCcggcctatcccactaaactg							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38882078	-	-	38882078	7	5	15	1	0	1	0	1	0	0	0	0	4377	494	18	0	141	0	DDX17	22	38882078	Frame_Shift_Del	DEL	C	TCGA-05-4410-01A-21D-1855-08	59385	38882078	12422488	2349	33999											
APOBEC3B	9582	broad.mit.edu	37	chr22	39385550	39385550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctacttgtgctatgagGtggagcgcctggacaatggc	14	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39385550	T	T	39385550	3	4	15	1	0	0	0	0	1	0	0	0	792	1261	44	3	676	3	APOBEC3B	22	39385550	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	503472	39385550	11919016	2350	34000											
TAB1	10454	broad.mit.edu	37	chr22	39822857	39822857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcccccggcacgaggaCatgaccctgctagtgaggaa	12	13	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39822857	A	A	39822857	3	1	15	1	0	0	0	0	1	0	0	0	15614	477	17	3	1105	3	TAB1	22	39822857	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	437307	39822857	11481709	2351	34001											
ENTHD1	150350	broad.mit.edu	37	chr22	40272053	40272053	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggatcagattgggtccTgctactctcaaccttgaagt	11	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40272053	C	C	40272053	1	2	15	0	1	0	0	0	0	0	0	0	5179	1595	55	5		5	ENTHD1	22	40272053	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	449196	40272053	11032513	2352	34002											
GRAP2	9402	broad.mit.edu	37	chr22	40367056	40367056	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaacaagctgggcctcttcCctgccaactacgtggcaccc	8	17	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40367056	G	G	40367056	3	3	15	1	0	0	0	0	1	0	0	0	6820	623	22	4	987	4	GRAP2	22	40367056	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	95003	40367056	10937510	2353	34003											
FAM83F	113828	broad.mit.edu	37	chr22	40417379	40417379	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctttgacacggagttcCgggagctgtacgccatctcc	11	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40417379	T	T	40417379	3	4	15	1	0	0	0	0	1	0	0	0	5691	643	23	4	879	4	FAM83F	22	40417379	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	50323	40417379	10887187	2354	34004											
MKL1	57591	broad.mit.edu	37	chr22	40814545	40814545	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctggggggcggggaccggctCgggctcaggctgcaaggctt	20	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40814545	G	G	40814545	3	3	15	1	0	0	0	0	1	0	0	0	9694	893	31	4	914	4	MKL1	22	40814545	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	397166	40814545	10490021	2355	34005											
MKL1	57591	broad.mit.edu	37	chr22	40831402	40831402	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtctagcaggctctggccTcagagttctatggaaagctc	12	10	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40831402	A	A	40831402	1	1	15	0	1	0	0	0	0	0	0	0	9694	1566	54	5		5	MKL1	22	40831402	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	16857	40831402	10473164	2356	34006											
RANGAP1	5905	broad.mit.edu	37	chr22	41645438	41645438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtacaggttggcaatggcCttgaccttgtcttcactctg	10	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41645438	A	A	41645438	3	1	15	1	0	0	0	0	1	0	0	0	13141	680	24	2	181	2	RANGAP1	22	41645438	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	814036	41645438	9659128	2357	34007											
ZC3H7B	23264	broad.mit.edu	37	chr22	41745200	41745200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaggagcacttccagttcGacgtgtgccgccatgaggtg	13	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41745200	T	T	41745200	3	4	15	1	0	0	0	0	1	0	0	0	17699	1058	37	3	1901	3	ZC3H7B	22	41745200	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	99762	41745200	9559366	2358	34008											
NHP2L1	4809	broad.mit.edu	37	chr22	42072750	42072750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggttttaagagtctacCacgccaaaccctttgccact	6	14	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42072750	A	A	42072750	1	1	15	0	1	0	0	0	0	0	0	0	10505	609	21	2		2	NHP2L1	22	42072750	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	327550	42072750	9231816	2359	34009											
SCUBE1	80274	broad.mit.edu	37	chr22	43610086	43610086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacctctccttctaggcCcgcacttgcctccacattcc	4	22	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43610086	A	A	43610086	1	1	15	0	1	0	0	0	0	0	0	0	14057	638	22	2		2	SCUBE1	22	43610086	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1537336	43610086	7694480	2360	34010											
SCUBE1	80274	broad.mit.edu	37	chr22	43610369	43610369	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtccttgtcccctgggGccccaaggacacagaggggc	13	15	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43610369	A	A	43610369	1	1	15	0	1	0	0	0	0	0	0	0	14057	1218	42	4		4	SCUBE1	22	43610369	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	283	43610369	7694197	2361	34011											
SULT4A1	25830	broad.mit.edu	37	chr22	44237718	44237718	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccggctgtgggtactccagGaccgggagctgctcgtcgat	15	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44237718	T	T	44237718	2	4	15	1	0	0	0	0	0	0	0	1	15501	1161	41	3		3	SULT4A1	22	44237718	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	627349	44237718	7066848	2362	34012											
SULT4A1	25830	broad.mit.edu	37	chr22	44237804	44237804	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagaccacctcctgcagcaAgctggtgcctggaggggaga	15	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44237804	T	T	44237804	3	4	15	1	0	0	0	0	1	0	0	0	15501	69	3	5	700	5	SULT4A1	22	44237804	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	86	44237804	7066762	2363	34013											
SAMM50	25813	broad.mit.edu	37	chr22	44364491	44364491	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggtcttggtagtgctctCtgctcagtgatctgacttag	12	9	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44364491	T	T	44364491	1	4	15	0	1	0	0	0	0	0	0	0	13940	928	32	4		4	SAMM50	22	44364491	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	126687	44364491	6940075	2364	34014											
PARVG	64098	broad.mit.edu	37	chr22	44587858	44587858	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggatgatacagagcaaacgGatcactggggcttctttggg	15	7	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44587858	A	A	44587858	1	1	15	0	1	0	0	0	0	0	0	0	11564	1189	41	4		4	PARVG	22	44587858	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	223367	44587858	6716708	2365	34015											
KIAA1644	85352	broad.mit.edu	37	chr22	44681700	44681700	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggcttcatcagtggggctGattagagaatgtgtcctggg	15	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44681700	T	T	44681700	1	4	15	0	1	0	0	0	0	0	0	0	8320	1305	45	3		3	KIAA1644	22	44681700	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	93842	44681700	6622866	2366	34016											
FBLN1	2192	broad.mit.edu	37	chr22	45960905	45960905	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctggacagacagtcagctCcacaccttgcgctgagcagc	10	15	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45960905	A	A	45960905	1	1	15	0	1	0	0	0	0	0	0	0	5755	870	30	3		3	FBLN1	22	45960905	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1279205	45960905	5343661	2367	34017											
FBLN1	2192	broad.mit.edu	37	chr22	45996263	45996263	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgaactatgtggtcggGggcgtggtctcccaccgaaa	15	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45996263	T	T	45996263	2	4	15	1	0	0	0	0	0	0	0	1	5755	1219	43	2		2	FBLN1	22	45996263	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	35358	45996263	5308303	2368	34018											
PKDREJ	10343	broad.mit.edu	37	chr22	46655703	46655703	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcttgatgatgtttaaccGtagatccacaggattaggga	11	7	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46655703	C	C	46655703	3	2	15	1	0	0	0	0	1	0	0	0	12065	1144	40	4	3248	4	PKDREJ	22	46655703	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	659440	46655703	4648863	2369	34019											
FAM19A5	25817	broad.mit.edu	37	chr22	49103622	49103622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccggtcaggctggacgtGcacgcagcccggcgggagga	17	13	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49103622	T	T	49103622	3	4	15	1	0	0	0	0	1	0	0	0	5582	1319	46	3	461	3	FAM19A5	22	49103622	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2447919	49103622	2200944	2370	34020											
FAM19A5	25817	broad.mit.edu	37	chr22	49103825	49103837	+	Intron	DEL	TCCTGACCATCTG	-	-													ctccctctctggtgctaaatTcctgaccatctgtcctgggg					rs141710021		TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49103837	-	-	49103825	6	5	15	0	1	1	0	1	0	0	0	0	5582	1798	62	0		0	FAM19A5	22	49103825	Intron	DEL	TCCTGACCATCTG	TCGA-05-4410-01A-21D-1855-08	203	49103825	2200741	2371	34021											
PLXNB2	23654	broad.mit.edu	37	chr22	50719226	50719226	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaactggtagagggcctGctccaccaccggccgccgcg	15	15	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50719226	A	A	50719226	4	1	15	1	0	0	0	0	0	1	0	0	12219	1328	46	4	1632	4	PLXNB2	22	50719226	Nonsense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1615401	50719226	585340	2372	34022											
MIOX	55586	broad.mit.edu	37	chr22	50925377	50925377	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgcagagaggctctgctGactgctctcctggtggccag	13	13	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50925377	A	A	50925377	1	1	15	0	1	0	0	0	0	0	0	0	9683	1305	45	4		4	MIOX	22	50925377	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	206151	50925377	379189	2373	34023											
SHANK3	85358	broad.mit.edu	37	chr22	51117880	51117880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgactgtgtgtcctgcacatGcctgcaccagcgagtgtgca	12	13	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51117880	T	T	51117880	1	4	15	0	1	0	0	0	0	0	0	0	14379	1334	46	3		3	SHANK3	22	51117880	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	192503	51117880	186686	2374	34024											
MXRA5	25878	broad.mit.edu	37	chrX	3235987	3235987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccttccgtatcactaagGtaccgttcttgagaacctca	7	12	3	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3235987	T	T	3235987	3	4	15	1	0	0	0	0	1	0	0	0	10097	1261	44	3	2759	3	MXRA5	23	3235987	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08		3235987	152034573	2375	34025											
AMELX	265	broad.mit.edu	37	chrX	11316996	11316996	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccgccacagccacctcTgcctccgatgttccccatgc	7	21	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11316996	A	A	11316996	3	1	15	1	0	0	0	0	1	0	0	0	569	1580	55	5	533	5	AMELX	23	11316996	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	8081009	11316996	143953564	2376	34026											
REPS2	9185	broad.mit.edu	37	chrX	17070379	17070379	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcataattgctttgaggaAtaaatatgtttgtggttata	8	2	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17070379	G	G	17070379	1	3	15	0	1	0	0	0	0	0	0	0	13337	116	4	5		5	REPS2	23	17070379	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	5753383	17070379	138200181	2377	34027											
KLHL34	257240	broad.mit.edu	37	chrX	21674113	21674113	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtcctcccaacggtccagGtcgaggtcgtagcccactac	10	15	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21674113	A	A	21674113	2	1	15	1	0	0	0	0	0	0	0	1	8458	1252	44	4		4	KLHL34	23	21674113	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	4603734	21674113	133596447	2378	34028											
DDX53	168400	broad.mit.edu	37	chrX	23020012	23020012	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatcaacaaaagaggcacaGagaaacacgatcaagaaaac	7	8	2	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23020012	T	T	23020012	3	4	15	1	0	0	0	0	1	0	0	0	4404	942	33	3	1840	3	DDX53	23	23020012	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1345899	23020012	132250548	2379	34029											
FAM48B2	170067	broad.mit.edu	37	chrX	24330937	24330937	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcatggttggacgtagaaGaatatgcctgctttggtaac	12	7	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24330937	T	T	24330937	3	4	15	1	0	0	0	0	1	0	0	0	5625	942	33	3	1960	3	FAM48B2	23	24330937	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1310925	24330937	130939623	2380	34030											
NR0B1	190	broad.mit.edu	37	chrX	30327199	30327199	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agcgtcgcctcgggcgccttCggtgccgcgtacgtttgctt	14	14	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30327199	G	G	30327199	2	3	15	1	0	0	0	0	0	0	0	1	10708	871	31	4		4	NR0B1	23	30327199	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	5996262	30327199	124943361	2381	34031											
GK	2710	broad.mit.edu	37	chrX	30726207	30726207	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggccttctcaccacagtgGcttacaaacttggcagagac	9	12	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30726207	A	A	30726207	3	1	15	1	0	0	0	0	1	0	0	0	6484	1203	42	4	981	4	GK	23	30726207	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	399008	30726207	124544353	2382	34032											
FAM47C	442444	broad.mit.edu	37	chrX	37028486	37028486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgggtgtccagtctcccccCggagccccccgagactggag	13	17	1	1	rs142735792	byFrequency	TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37028486	A	A	37028486	3	1	15	1	0	0	0	0	1	0	0	0	5622	652	23	1	2005	1	FAM47C	23	37028486	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	6302279	37028486	118242074	2383	34033											
DDX3X	1654	broad.mit.edu	37	chrX	41201812	41201812	+	Frame_Shift_Del	DEL	G	-	-													gtggtgacagaagtggctttGgcaaatttgaacgtggtgga							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41201812	-	-	41201812	7	5	15	1	0	1	0	1	0	0	0	0	4391	1348	47	0	367	0	DDX3X	23	41201812	Frame_Shift_Del	DEL	G	TCGA-05-4410-01A-21D-1855-08	4173326	41201812	114068748	2384	34034											
DGKK	139189	broad.mit.edu	37	chrX	50146661	50146661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggattctaattctcttcCcaaagctgctctgaaagtta	7	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50146661	A	A	50146661	1	1	15	0	1	0	0	0	0	0	0	0	4512	638	22	2		2	DGKK	23	50146661	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	8944849	50146661	105123899	2385	34035											
MAGED1	9500	broad.mit.edu	37	chrX	51641313	51641313	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggctggacctgcagctgGgggttggccacagcctgatt	16	10	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51641313	T	T	51641313	1	4	15	0	1	0	0	0	0	0	0	0	9275	1247	43	2		2	MAGED1	23	51641313	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	1494652	51641313	103629247	2386	34036											
SSX7	280658	broad.mit.edu	37	chrX	52677375	52677375	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcacaggtgtttcccatcGttctgtgagccagatgcttc	12	11	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52677375	A	A	52677375	2	1	15	1	0	0	0	0	0	0	0	1	15327	1136	40	4		4	SSX7	23	52677375	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1036062	52677375	102593185	2387	34037											
FAM120C	54954	broad.mit.edu	37	chrX	54162861	54162861	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccactctggccctggagttCctgagggaccaactcagttt	10	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54162861	A	A	54162861	1	1	15	0	1	0	0	0	0	0	0	0	5464	870	30	3		3	FAM120C	23	54162861	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1485486	54162861	101107699	2388	34038											
MAGED2	10916	broad.mit.edu	37	chrX	54839521	54839521	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attccatgtgttcaatttctGtccctgtctcctcttgcctc	5	14	4	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54839521	A	A	54839521	1	1	15	0	1	0	0	0	0	0	0	0	9276	1392	48	4		4	MAGED2	23	54839521	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	676660	54839521	100431039	2389	34039											
TRO	7216	broad.mit.edu	37	chrX	54956381	54956381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggctgtgccgtcagcaCcagtgccagcttcagtggtg	13	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54956381	A	A	54956381	3	1	15	1	0	0	0	0	1	0	0	0	16699	507	18	3	3266	3	TRO	23	54956381	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	116860	54956381	100314179	2390	34040											
FOXR2	139628	broad.mit.edu	37	chrX	55651049	55651049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagtgcatgagtcagcCagagttgttgacctctctct	10	11	3	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55651049	A	A	55651049	3	1	15	1	0	0	0	0	1	0	0	0	6092	594	21	2	907	2	FOXR2	23	55651049	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	694668	55651049	99619511	2391	34041											
ZC4H2	55906	broad.mit.edu	37	chrX	64196404	64196404	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcctgggagctgtagtccgGagcttcagggccagccagga	17	11	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64196404	T	T	64196404	1	4	15	0	1	0	0	0	0	0	0	0	17704	1189	41	3		3	ZC4H2	23	64196404	5'Flank	SNP	G	TCGA-05-4410-01A-21D-1855-08	8545355	64196404	91074156	2392	34042											
VSIG4	11326	broad.mit.edu	37	chrX	65252501	65252501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgatgggaggagaacccCgagcctggcattgaaggcta	14	9	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65252501	A	A	65252501	3	1	15	1	0	0	0	0	1	0	0	0	17352	652	23	1	724	1	VSIG4	23	65252501	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1056097	65252501	90018059	2393	34043											
STARD8	9754	broad.mit.edu	37	chrX	67937280	67937280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcagacttgcccttgcCaggccgtgcccccagctcga	11	18	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67937280	A	A	67937280	3	1	15	1	0	0	0	0	1	0	0	0	15381	594	21	2	546	2	STARD8	23	67937280	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	2684779	67937280	87333280	2394	34044											
ACRC	93953	broad.mit.edu	37	chrX	70817761	70817761	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaagaagactgttgcgttCatacttctctcttgtttttc	6	8	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70817761	T	T	70817761	1	4	15	0	1	0	0	0	0	0	0	0	171	841	29	4		4	ACRC	23	70817761	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2880481	70817761	84452799	2395	34045											
CDX4	1046	broad.mit.edu	37	chrX	72674320	72674320	+	Frame_Shift_Del	DEL	T	-	-													cggtgcaaagtgactctgacTccatcagccctggggaacta							TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72674320	-	-	72674320	7	5	15	1	0	1	0	1	0	0	0	0	3214	1551	54	0	764	0	CDX4	23	72674320	Frame_Shift_Del	DEL	T	TCGA-05-4410-01A-21D-1855-08	1856559	72674320	82596240	2396	34046											
SLC16A2	6567	broad.mit.edu	37	chrX	73641466	73641466	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcagccacagtcccccCgccgcgatggcgctgcaaag	11	18	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73641466	A	A	73641466	2	1	15	1	0	0	0	0	0	0	0	1	14521	639	23	1		1	SLC16A2	23	73641466	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	967146	73641466	81629094	2397	34047											
RLIM	51132	broad.mit.edu	37	chrX	73812542	73812542	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctgacctctggtaggtGggacctctgttaacgcttca	10	12	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73812542	A	A	73812542	3	1	15	1	0	0	0	0	1	0	0	0	13501	1348	47	4	1270	4	RLIM	23	73812542	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	171076	73812542	81458018	2398	34048											
P2RY10	27334	broad.mit.edu	37	chrX	78216452	78216452	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggccagagactggaaGcgtaggtacgatgtgggcat	16	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78216452	C	C	78216452	3	2	15	1	0	0	0	0	1	0	0	0	11441	962	34	4	437	4	P2RY10	23	78216452	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	4403910	78216452	77054108	2399	34049											
BRWD3	254065	broad.mit.edu	37	chrX	79937889	79937889	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggatctccccaaattattCataaactttcacaaattagg	5	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79937889	A	A	79937889	1	1	15	0	1	0	0	0	0	0	0	0	1535	841	29	3		3	BRWD3	23	79937889	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	1721437	79937889	75332671	2400	34050											
RPS6KA6	27330	broad.mit.edu	37	chrX	83319945	83319945	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtttattaggtatctgatAtctcgaaggcacataaaagt	10	5	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83319945	G	G	83319945	1	3	15	0	1	0	0	0	0	0	0	0	13766	464	16	5		5	RPS6KA6	23	83319945	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	3382056	83319945	71950615	2401	34051											
RPS6KA6	27330	broad.mit.edu	37	chrX	83375044	83375044	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtccaaaatctataataAcagtattaccaaaaaatgtg	5	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83375044	G	G	83375044	1	3	15	0	1	0	0	0	0	0	0	0	13766	58	2	5		5	RPS6KA6	23	83375044	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	55099	83375044	71895516	2402	34052											
RPS6KA6	27330	broad.mit.edu	37	chrX	83389786	83389786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtataataagaaaatctgcAtacctgttaatttgatatgt	7	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83389786	G	G	83389786	1	3	15	0	1	0	0	0	0	0	0	0	13766	232	8	5		5	RPS6KA6	23	83389786	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	14742	83389786	71880774	2403	34053											
RPS6KA6	27330	broad.mit.edu	37	chrX	83411040	83411040	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttcactttttttgctaaAtgtttagaagaggaacaaat	8	4	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83411040	G	G	83411040	1	3	15	0	1	0	0	0	0	0	0	0	13766	116	4	5		5	RPS6KA6	23	83411040	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	21254	83411040	71859520	2404	34054											
KLHL4	56062	broad.mit.edu	37	chrX	86773015	86773015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagctgtcttcagcaggaagGatatgagcatagagggaccc	13	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86773015	T	T	86773015	3	4	15	1	0	0	0	0	1	0	0	0	8462	1174	41	3	121	3	KLHL4	23	86773015	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	3361975	86773015	68497545	2405	34055											
CPXCR1	53336	broad.mit.edu	37	chrX	88008656	88008656	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagatccaaaaagatcaaCgagaagaagatctaaaagaa	8	6	2	6			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88008656	T	T	88008656	4	4	15	1	0	0	0	0	0	1	0	0	3868	528	19	4	243	4	CPXCR1	23	88008656	Nonsense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1235641	88008656	67261904	2406	34056											
PCDH11X	27328	broad.mit.edu	37	chrX	91091046	91091046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactacgaactaattaaggtGcgttttaaaatcactttgtt	6	6	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91091046	T	T	91091046	1	4	15	0	1	0	0	0	0	0	0	0	11602	1334	46	3		3	PCDH11X	23	91091046	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3082390	91091046	64179514	2407	34057											
PCDH11X	27328	broad.mit.edu	37	chrX	91131875	91131875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttagatagggaagagaaGgatacctacgtgatgaaagt	14	3	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91131875	T	T	91131875	3	4	15	1	0	0	0	0	1	0	0	0	11602	991	35	2	642	2	PCDH11X	23	91131875	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	40829	91131875	64138685	2408	34058											
PCDH11X	27328	broad.mit.edu	37	chrX	91369067	91369067	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgcccctgatacaggcatGacaggaggcacccatgtagt	13	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91369067	A	A	91369067	1	1	15	0	1	0	0	0	0	0	0	0	11602	1305	45	4		4	PCDH11X	23	91369067	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	237192	91369067	63901493	2409	34059											
NAP1L3	4675	broad.mit.edu	37	chrX	92927045	92927045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctccagtagcagttgtgCgactctgggtagttgtcaca	11	9	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92927045	A	A	92927045	3	1	15	1	0	0	0	0	1	0	0	0	10252	768	27	3	265	3	NAP1L3	23	92927045	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1557978	92927045	62343515	2410	34060											
DIAPH2	1730	broad.mit.edu	37	chrX	96328001	96328001	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctacaaagaagaaagtgaaAgaactgagaattttggatcc	9	6	0	5			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96328001	C	C	96328001	3	2	15	1	0	0	0	0	1	0	0	0	4559	69	3	5	2182	5	DIAPH2	23	96328001	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	3400956	96328001	58942559	2411	34061											
NXF3	56000	broad.mit.edu	37	chrX	102343779	102343779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatctttctaatcatccaCgtaataatgttaactataat	2	8	3	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102343779	A	A	102343779	1	1	15	0	1	0	0	0	0	0	0	0	10880	551	19	3		3	NXF3	23	102343779	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	6015778	102343779	52926781	2412	34062											
CXorf57	55086	broad.mit.edu	37	chrX	105883729	105883729	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaattgtagtcttttatgaGattaataattgtgaattagc	7	2	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105883729	C	C	105883729	1	2	15	0	1	0	0	0	0	0	0	0	4146	957	33	4		4	CXorf57	23	105883729	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	3539950	105883729	49386831	2413	34063											
NUP62CL	54830	broad.mit.edu	37	chrX	106396497	106396497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacagaaattctagttcCtgctgctgtgacaggataaa	9	8	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106396497	A	A	106396497	3	1	15	1	0	0	0	0	1	0	0	0	10864	680	24	2	127	2	NUP62CL	23	106396497	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	512768	106396497	48874063	2414	34064											
PRPS1	5631	broad.mit.edu	37	chrX	106890894	106890894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcatggaatcttctccGgtcctgctatttctcgcatc	7	13	4	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106890894	T	T	106890894	3	4	15	1	0	0	0	0	1	0	0	0	12684	1116	39	1	785	1	PRPS1	23	106890894	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	494397	106890894	48379666	2415	34065											
COL4A5	1287	broad.mit.edu	37	chrX	107814669	107814669	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtggatttccaggcagtccCggttttcctggtttacaggg	13	10	0	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107814669	G	G	107814669	2	3	15	1	0	0	0	0	0	0	0	1	3726	639	23	4		4	COL4A5	23	107814669	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	923775	107814669	47455891	2416	34066											
CHRDL1	91851	broad.mit.edu	37	chrX	110002765	110002765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggccagtttggactgcCtaaaggttcctattgttatc	10	8	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110002765	A	A	110002765	1	1	15	0	1	0	0	0	0	0	0	0	3404	696	24	2		2	CHRDL1	23	110002765	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	2188096	110002765	45267795	2417	34067											
TRPC5	7224	broad.mit.edu	37	chrX	111155894	111155894	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacactccacacagttgcaGcggatctggtggggccgtgg	14	12	1	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111155894	T	T	111155894	2	4	15	1	0	0	0	0	0	0	0	1	16707	958	34	3		3	TRPC5	23	111155894	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	1153129	111155894	44114666	2418	34068											
SLC25A43	203427	broad.mit.edu	37	chrX	118544216	118544216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggagaaaatctggaacgGaccccgagatcagttctctc	10	12	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118544216	T	T	118544216	3	4	15	1	0	0	0	0	1	0	0	0	14622	1174	41	3	591	3	SLC25A43	23	118544216	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	7388322	118544216	36726344	2419	34069											
SLC25A14	9016	broad.mit.edu	37	chrX	129492640	129492640	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaggctcaaggaagcttGttccaagggagcatgattgg	14	7	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129492640	A	A	129492640	2	1	15	1	0	0	0	0	0	0	0	1	14590	1368	48	4		4	SLC25A14	23	129492640	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	10948424	129492640	25777920	2420	34070											
SLC25A14	9016	broad.mit.edu	37	chrX	129499695	129499695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatttggctttctttgatGtcttagaccttccttcagtt	6	9	3	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129499695	T	T	129499695	1	4	15	0	1	0	0	0	0	0	0	0	14590	1392	48	3		3	SLC25A14	23	129499695	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	7055	129499695	25770865	2421	34071											
ARHGAP36	158763	broad.mit.edu	37	chrX	130215686	130215686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcaagggcactgtgccCcagaatcatgccccctttgc	11	15	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130215686	A	A	130215686	3	1	15	1	0	0	0	0	1	0	0	0	885	623	22	2	49	2	ARHGAP36	23	130215686	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	715991	130215686	25054874	2422	34072											
GPC3	2719	broad.mit.edu	37	chrX	133087218	133087218	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatgttgggcccttagggaGacatacttgcaaatctgatc	11	9	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133087218	T	T	133087218	3	4	15	1	0	0	0	0	1	0	0	0	6664	942	33	3	1647	3	GPC3	23	133087218	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2871532	133087218	22183342	2423	34073											
SLC9A6	10479	broad.mit.edu	37	chrX	135095604	135095604	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagaactaaacaggtaagagGaactttatagtttgtgaata	9	3	0	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135095604	T	T	135095604	1	4	15	0	1	0	0	0	0	0	0	0	14832	1189	41	3		3	SLC9A6	23	135095604	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2008386	135095604	20174956	2424	34074											
GPR112	139378	broad.mit.edu	37	chrX	135435659	135435659	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatgtttatgtctgagattTagggctgccacatttttagt	9	6	1	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135435659	C	C	135435659	1	2	15	0	1	0	0	0	0	0	0	0	6694	1769	61	5		5	GPR112	23	135435659	Intron	SNP	T	TCGA-05-4410-01A-21D-1855-08	340055	135435659	19834901	2425	34075											
GPR112	139378	broad.mit.edu	37	chrX	135487937	135487937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaatctctccatgttctGcactgttcttgttcaactga	6	11	4	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135487937	T	T	135487937	3	4	15	1	0	0	0	0	1	0	0	0	6694	1319	46	3	8819	3	GPR112	23	135487937	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	52278	135487937	19782623	2426	34076											
CD40LG	959	broad.mit.edu	37	chrX	135741286	135741286	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctgaccgttaaaagacaAggactctattatatctatgc	7	9	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135741286	C	C	135741286	3	2	15	1	0	0	0	0	1	0	0	0	3046	69	3	5	516	5	CD40LG	23	135741286	Missense_Mutation	SNP	A	TCGA-05-4410-01A-21D-1855-08	253349	135741286	19529274	2427	34077											
RBMX	27316	broad.mit.edu	37	chrX	135958873	135958873	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatcaagaaagatataaAagtttttttttttttttgag	6	1	1	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135958873	C	C	135958873	1	2	15	0	1	0	0	0	0	0	0	0	13259	29	1	5		5	RBMX	23	135958873	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08	217587	135958873	19311687	2428	34078											
GPR101	83550	broad.mit.edu	37	chrX	136113092	136113092	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccttcttctctgctccctCttcatcctcattctccacac	1	20	6	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136113092	G	G	136113092	3	3	15	1	0	0	0	0	1	0	0	0	6687	922	32	4	787	4	GPR101	23	136113092	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	154219	136113092	19157468	2429	34079											
F9	2158	broad.mit.edu	37	chrX	138623303	138623303	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgacattaattcctatGaatgttggtgtccctttgga	10	6	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138623303	A	A	138623303	3	1	15	1	0	0	0	0	1	0	0	0	5397	1291	45	4	360	4	F9	23	138623303	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	2510211	138623303	16647257	2430	34080											
MAGEC3	139081	broad.mit.edu	37	chrX	140969830	140969830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgctttgaaagatgtGgaagacagagcccaggccat	13	7	0	4			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140969830	T	T	140969830	1	4	15	0	1	0	0	0	0	0	0	0	9274	1363	47	2		2	MAGEC3	23	140969830	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	2346527	140969830	14300730	2431	34081											
MAGEC1	9947	broad.mit.edu	37	chrX	140995906	140995906	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagcgagcccttgttcactTatacactggatgaaaaggtg	11	8	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995906	A	A	140995906	3	1	15	1	0	0	0	0	1	0	0	0	9272	1754	61	5	2722	5	MAGEC1	23	140995906	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	26076	140995906	14274654	2432	34082											
SLITRK4	139065	broad.mit.edu	37	chrX	142718172	142718172	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgttggtttcttttaaaagCcttccatataagtcactggg	8	7	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142718172	G	G	142718172	3	3	15	1	0	0	0	0	1	0	0	0	14859	738	26	4	1764	4	SLITRK4	23	142718172	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	1722266	142718172	12552388	2433	34083											
SPANXN2	494119	broad.mit.edu	37	chrX	142803913	142803913	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagccacactcttgagcTttgtttgatcatacaggcag	9	10	2	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142803913	A	A	142803913	1	1	15	1	0	0	0	0	0	0	0	0	15107	1624	56	5		5	SPANXN2	23	142803913	Translation_Start_Site	SNP	T	TCGA-05-4410-01A-21D-1855-08	85741	142803913	12466647	2434	34084											
HSFX2	100130086	broad.mit.edu	37	chrX	148731071	148731071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgagcagcttcctgggCttcccatagacactgtgctt	12	11	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148731071	A	A	148731071	1	1	15	0	1	0	0	0	0	0	0	0	7468	812	28	3		3	HSFX2	23	148731071	Intron	SNP	C	TCGA-05-4410-01A-21D-1855-08	5927158	148731071	6539489	2435	34085											
MTMR1	8776	broad.mit.edu	37	chrX	149901077	149901077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcagccagccacttgtgGgtcccaatgataagcgctgc	12	12	0	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149901077	T	T	149901077	3	4	15	1	0	0	0	0	1	0	0	0	10032	1232	43	2	965	2	MTMR1	23	149901077	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	1170006	149901077	5369483	2436	34086											
CNGA2	1260	broad.mit.edu	37	chrX	150912786	150912786	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagaagctagggcagcTggagaccaacatggaaacct	14	9	0	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912786	A	A	150912786	3	1	15	1	0	0	0	0	1	0	0	0	3629	1580	55	5	1833	5	CNGA2	23	150912786	Missense_Mutation	SNP	T	TCGA-05-4410-01A-21D-1855-08	1011709	150912786	4357774	2437	34087											
GABRQ	55879	broad.mit.edu	37	chrX	151820193	151820193	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taggcgacacaggagaccccGaagagtcattgcccgctacc	11	14	1	2			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151820193	A	A	151820193	3	1	15	1	0	0	0	0	1	0	0	0	6235	1058	37	4	1136	4	GABRQ	23	151820193	Missense_Mutation	SNP	G	TCGA-05-4410-01A-21D-1855-08	907407	151820193	3450367	2438	34088											
MAGEA3	4102	broad.mit.edu	37	chrX	151935453	151935453	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcttcttgggatcccccaaGatactgtcttccctcccctc	6	17	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151935453	T	T	151935453	2	4	15	1	0	0	0	0	0	0	0	1	9257	932	33	3		3	MAGEA3	23	151935453	Silent	SNP	G	TCGA-05-4410-01A-21D-1855-08	115260	151935453	3335107	2439	34089											
ATP2B3	492	broad.mit.edu	37	chrX	152834703	152834703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgtgtcatgtccctcaGgtgtgttggagaggaaaaac	15	7	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152834703	T	T	152834703	1	4	15	0	1	0	0	0	0	0	0	0	1145	1015	35	2		2	ATP2B3	23	152834703	Intron	SNP	G	TCGA-05-4410-01A-21D-1855-08	899250	152834703	2435857	2440	34090											
L1CAM	3897	broad.mit.edu	37	chrX	153137770	153137770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtcacacccagctcttcCttgggtttgaagtggacacc	10	13	2	1			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153137770	A	A	153137770	3	1	15	1	0	0	0	0	1	0	0	0	8660	680	24	2	3636	2	L1CAM	23	153137770	Missense_Mutation	SNP	C	TCGA-05-4410-01A-21D-1855-08	303067	153137770	2132790	2441	34091											
PLXNA3	55558	broad.mit.edu	37	chrX	153688868	153688868	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggtggcctgcggcagcatCtggcagggcatctgccagtt	15	12	2	0			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153688868	T	T	153688868	2	4	15	1	0	0	0	0	0	0	0	1	12216	903	32	4		4	PLXNA3	23	153688868	Silent	SNP	C	TCGA-05-4410-01A-21D-1855-08	551098	153688868	1581692	2442	34092											
PCDH11Y	83259	broad.mit.edu	37	chrY	5441470	5441470	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctggcctcttacctggacAgagagaggagcctggagact	14	11	1	3			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5441470	G	G	5441470	1	3	15	0	1	0	0	0	0	0	0	0	11603	203	7	5		5	PCDH11Y	24	5441470	Intron	SNP	A	TCGA-05-4410-01A-21D-1855-08		5441470	53932096	2443	34093											
TP73	7161	broad.mit.edu	37	chr1	3648145	3648145	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcccgggtggaccccgctcTgcagaggcagtagctggagg	17	13	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3648145	A	A	3648145	1	1	16	0	1	0	0	0	0	0	0	0	16517	1595	55	5		5	TP73	1	3648145	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08		3648145	245602476	1	34094											
NPHP4	261734	broad.mit.edu	37	chr1	5925161	5925161	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccccagagaggccgtaCcttcagctcctggggatgag	13	14	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5925161	A	A	5925161	5	1	16	1	0	0	0	0	0	0	1	0	10676	521	18	3	479	3	NPHP4	1	5925161	Splice_Site	SNP	C	TCGA-05-4415-01A-22D-1855-08	2277016	5925161	243325460	2	34095											
SLC45A1	50651	broad.mit.edu	37	chr1	8390406	8390406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtcaccaccgtcctgaccCtggtcagcatccctgagagg	11	16	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8390406	A	A	8390406	3	1	16	1	0	0	0	0	1	0	0	0	14754	680	24	2	867	2	SLC45A1	1	8390406	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2465245	8390406	240860215	3	34096											
NPPB	4879	broad.mit.edu	37	chr1	11918591	11918591	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcaccagcccttcatggcAcccaagtgaaccgactgcct	8	17	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11918591	T	T	11918591	1	4	16	0	1	0	0	0	0	0	0	0	10687	174	6	5		5	NPPB	1	11918591	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	3528185	11918591	237332030	4	34097											
KAZ	23254	broad.mit.edu	37	chr1	14925597	14925597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaactcacggccaccaaccGgagactggcggaactgagcg	13	14	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14925597	A	A	14925597	3	1	16	1	0	0	0	0	1	0	0	0	8058	1116	39	4	106	4	KAZ	1	14925597	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3007006	14925597	234325024	5	34098											
HTR6	3362	broad.mit.edu	37	chr1	19992913	19992913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcaggccgtgcaggtgGcctccctcaccaccggcatg	13	16	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19992913	T	T	19992913	3	4	16	1	0	0	0	0	1	0	0	0	7521	1203	42	3	669	3	HTR6	1	19992913	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5067316	19992913	229257708	6	34099											
ASAP3	55616	broad.mit.edu	37	chr1	23765385	23765385	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggccctccacattctttAggcctccatttcccactctg	5	17	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23765385	G	G	23765385	1	3	16	0	1	0	0	0	0	0	0	0	1016	435	15	5		5	ASAP3	1	23765385	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	3772472	23765385	225485236	7	34100											
TINAGL1	64129	broad.mit.edu	37	chr1	32043087	32043087	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaagatggccaggagggtgGgtcactttgtccacctcaga	13	10	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32043087	A	A	32043087	1	1	16	0	1	0	0	0	0	0	0	0	16045	1247	43	4		4	TINAGL1	1	32043087	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	8277702	32043087	217207534	8	34101											
GRIK3	2899	broad.mit.edu	37	chr1	37307561	37307561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagacagatgggcagGgtgtgacgaagactgagcag	17	7	0	5			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37307561	T	T	37307561	1	4	16	0	1	0	0	0	0	0	0	0	6841	1247	43	2		2	GRIK3	1	37307561	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	5264474	37307561	211943060	9	34102											
LRRC7	57554	broad.mit.edu	37	chr1	70291569	70291569	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattgtataataatgtaccTaaatagaggaaatgcacatc	6	7	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70291569	G	G	70291569	1	3	16	0	1	0	0	0	0	0	0	0	9107	1537	53	5		5	LRRC7	1	70291569	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	32984008	70291569	178959052	10	34103											
LHX8	431707	broad.mit.edu	37	chr1	75622431	75622431	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtttcttttctgtctaTagaacttttataaaagctga	5	5	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75622431	C	C	75622431	1	2	16	0	1	0	0	0	0	0	0	0	8848	1421	49	5		5	LHX8	1	75622431	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	5330862	75622431	173628190	11	34104											
PIGK	10026	broad.mit.edu	37	chr1	77660920	77660920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttttcttactggcagggCgacctgcagctgtggagacc	13	11	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77660920	A	A	77660920	1	1	16	0	1	0	0	0	0	0	0	0	11985	783	27	3		3	PIGK	1	77660920	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	2038489	77660920	171589701	12	34105											
COL24A1	255631	broad.mit.edu	37	chr1	86590968	86590968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgatgcgatgagtggtcaCtgacaggctgaaatttgtct	12	7	2	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86590968	A	A	86590968	3	1	16	1	0	0	0	0	1	0	0	0	3715	565	20	3	4325	3	COL24A1	1	86590968	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	8930048	86590968	162659653	13	34106											
GBP4	115361	broad.mit.edu	37	chr1	89658733	89658733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtcctcagcttcatcaGgtctggggcaggattttgcc	13	10	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89658733	T	T	89658733	3	4	16	1	0	0	0	0	1	0	0	0	6338	1000	35	2	1426	2	GBP4	1	89658733	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3067765	89658733	159591888	14	34107											
VAV3	10451	broad.mit.edu	37	chr1	108313431	108313431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagagatcaaaagcattgCtgactttcttaaactttcct	6	8	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108313431	A	A	108313431	1	1	16	0	1	0	0	0	0	0	0	0	17260	812	28	3		3	VAV3	1	108313431	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	18654698	108313431	140937190	15	34108											
CLCC1	23155	broad.mit.edu	37	chr1	109477201	109477202	+	Intron	DNP	CA	AG	AG													gttggcacctttgtagtaatCagaattcttgcagagaagag							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	109477202	AG	AG	109477201	1	1	16	0	1	0	0	0	0	0	0	0	3491	841	29	3		3	CLCC1	1	109477201	Intron	DNP	CA	TCGA-05-4415-01A-22D-1855-08	1163770	109477201	139773420	16	34109											
PDE4DIP	9659	broad.mit.edu	37	chr1	145075718	145075718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccgggcgccgtctttcccGgctcggggtctgccgtgggg	17	15	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145075718	A	A	145075718	3	1	16	1	0	0	0	0	1	0	0	0	11737	1115	39	4	8667	4	PDE4DIP	1	145075718	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	35598517	145075718	104174903	17	34110											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150529664	150529664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacttgctccggcacccCgcccagcccggaccccaggc	9	24	0	0	rs140528374		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150529664	A	A	150529664	3	1	16	1	0	0	0	0	1	0	0	0	277	652	23	1	1938	1	ADAMTSL4	1	150529664	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	5453946	150529664	98720957	18	34111											
HRNR	388697	broad.mit.edu	37	chr1	152187539	152187540	+	Missense_Mutation	DNP	CC	AT	AT													aggagtgccccgaaccggacCcatgtcggccgcggctaggg							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	152187540	AT	AT	152187539	3	1	16	1	0	0	0	0	1	0	0	0	7426	623	22	2	1990	2	HRNR	1	152187539	Missense_Mutation	DNP	CC	TCGA-05-4415-01A-22D-1855-08	1657875	152187539	97063082	19	34112											
S100A4	6275	broad.mit.edu	37	chr1	153517281	153517281	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcacgccatgacagcagtcAggatctgggagcaggaggca	16	10	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153517281	G	G	153517281	1	3	16	0	1	0	0	0	0	0	0	0	13891	203	7	5		5	S100A4	1	153517281	5'UTR	SNP	A	TCGA-05-4415-01A-22D-1855-08	1329742	153517281	95733340	20	34113											
ASH1L	55870	broad.mit.edu	37	chr1	155449990	155449990	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttgcctcttaggcctgcCtctcttttttggaaaaggag	9	10	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155449990	T	T	155449990	3	4	16	1	0	0	0	0	1	0	0	0	1045	681	24	4	6327	4	ASH1L	1	155449990	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1932709	155449990	93800631	21	34114											
BCAN	63827	broad.mit.edu	37	chr1	156619804	156619804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagagactgagagaaaagCattacttccatttggacaga	11	6	0	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156619804	A	A	156619804	1	1	16	0	1	0	0	0	0	0	0	0	1350	725	25	3		3	BCAN	1	156619804	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1169814	156619804	92630817	22	34115											
OR10X1	128367	broad.mit.edu	37	chr1	158549146	158549146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgggtctgcagaaagagtCcctgaatatcagtgcagtct	12	8	3	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158549146	A	A	158549146	3	1	16	1	0	0	0	0	1	0	0	0	11016	855	30	3	431	3	OR10X1	1	158549146	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1929342	158549146	90701475	23	34116											
OR10J3	441911	broad.mit.edu	37	chr1	159283997	159283997	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggccatgccaaggccaatCcccagtgatccagaggccag	11	14	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159283997	A	A	159283997	2	1	16	1	0	0	0	0	0	0	0	1	11005	842	30	3		3	OR10J3	1	159283997	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	734851	159283997	89966624	24	34117											
ATP1A4	480	broad.mit.edu	37	chr1	160124868	160124868	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagggcaaaggaaatcctgActcgaggtggacccaatact	11	9	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160124868	T	T	160124868	3	4	16	1	0	0	0	0	1	0	0	0	1135	275	10	5	251	5	ATP1A4	1	160124868	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	840871	160124868	89125753	25	34118											
ATP1A4	480	broad.mit.edu	37	chr1	160137041	160137041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtagcatgcccctggggCttactatacaaaccccatcc	8	15	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160137041	A	A	160137041	1	1	16	0	1	0	0	0	0	0	0	0	1135	812	28	3		3	ATP1A4	1	160137041	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	12173	160137041	89113580	26	34119											
CASQ1	844	broad.mit.edu	37	chr1	160165582	160165582	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtggcagtgacaaggatCccggctttctgactcccttc	10	13	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160165582	A	A	160165582	1	1	16	0	1	0	0	0	0	0	0	0	2706	870	30	3		3	CASQ1	1	160165582	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	28541	160165582	89085039	27	34120											
SLAMF1	6504	broad.mit.edu	37	chr1	160589701	160589701	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcaggagctccttactcaGacctggtctttactgtcctt	8	13	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160589701	A	A	160589701	1	1	16	0	1	0	0	0	0	0	0	0	14480	957	33	4		4	SLAMF1	1	160589701	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	424119	160589701	88660920	28	34121											
F5	2153	broad.mit.edu	37	chr1	169541371	169541371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatttccctaacaacacGtggttaacagtatagtttta	7	7	0	1	rs113847605	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169541371	T	T	169541371	1	4	16	0	1	0	0	0	0	0	0	0	5391	1160	40	3		3	F5	1	169541371	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	8951670	169541371	79709250	29	34122											
TNN	63923	broad.mit.edu	37	chr1	175092666	175092666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgacggagagaccagGgaggttccggtggggaagga	19	7	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175092666	T	T	175092666	3	4	16	1	0	0	0	0	1	0	0	0	16446	1223	43	2	2823	2	TNN	1	175092666	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5551295	175092666	74157955	30	34123											
PAPPA2	60676	broad.mit.edu	37	chr1	176564316	176564316	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggggagagaaggtgataCgctaccaggtggtgaacatc	15	7	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176564316	T	T	176564316	3	4	16	1	0	0	0	0	1	0	0	0	11527	536	19	4	1582	4	PAPPA2	1	176564316	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1471650	176564316	72686305	31	34124											
CACNA1E	777	broad.mit.edu	37	chr1	181620507	181620507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggagccacctggaattggCtgtacttcatccccctcatc	8	14	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181620507	A	A	181620507	3	1	16	1	0	0	0	0	1	0	0	0	2568	796	28	3	1011	3	CACNA1E	1	181620507	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	5056191	181620507	67630114	32	34125											
DHX9	1660	broad.mit.edu	37	chr1	182843888	182843888	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagaatcagactagagGggtattaaagtagttttgaa	12	2	1	5			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182843888	A	A	182843888	1	1	16	0	1	0	0	0	0	0	0	0	4556	1247	43	4		4	DHX9	1	182843888	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1223381	182843888	66406733	33	34126											
HMCN1	83872	broad.mit.edu	37	chr1	186026523	186026523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agccttagcaattctgtgagGattctttcaggtattagaaa	9	6	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186026523	T	T	186026523	3	4	16	1	0	0	0	0	1	0	0	0	7287	1165	41	3	7484	3	HMCN1	1	186026523	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3182635	186026523	63224098	34	34127											
FAM5C	339479	broad.mit.edu	37	chr1	190067405	190067405	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtccagctgcaaaatcaggtCccgaattgcttcagggtcaa	10	11	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190067405	G	G	190067405	3	3	16	1	0	0	0	0	1	0	0	0	5645	855	30	4	260	4	FAM5C	1	190067405	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	4040882	190067405	59183216	35	34128											
FAM5C	339479	broad.mit.edu	37	chr1	190203680	190203680	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttggttcactgtagttgtcAcacactaatattatacgttt	6	7	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190203680	T	T	190203680	1	4	16	0	1	0	0	0	0	0	0	0	5645	174	6	5		5	FAM5C	1	190203680	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	136275	190203680	59046941	36	34129											
TROVE2	6738	broad.mit.edu	37	chr1	193051691	193051691	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgcttttgttccgaattaGatcccagcaggtggaactga	10	9	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193051691	C	C	193051691	5	2	16	1	0	0	0	0	0	0	1	0	16701	956	33	4	1343	4	TROVE2	1	193051691	Splice_Site	SNP	G	TCGA-05-4415-01A-22D-1855-08	2848011	193051691	56198930	37	34130											
CRB1	23418	broad.mit.edu	37	chr1	197396716	197396716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcaggcttacttctagCtttggaaaacagcacttatc	6	11	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197396716	A	A	197396716	3	1	16	1	0	0	0	0	1	0	0	0	3880	797	28	3	2287	3	CRB1	1	197396716	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	4345025	197396716	51853905	38	34131											
LHX9	56956	broad.mit.edu	37	chr1	197890336	197890336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggaaccctcccaggtcCcagtctcaggccactgcaga	9	18	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197890336	A	A	197890336	1	1	16	0	1	0	0	0	0	0	0	0	8849	638	22	2		2	LHX9	1	197890336	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	493620	197890336	51360285	39	34132											
PLXNA2	5362	broad.mit.edu	37	chr1	208234017	208234017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgggaaaagggctggcCagggcggactcactgctcag	15	12	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208234017	A	A	208234017	1	1	16	0	1	0	0	0	0	0	0	0	12215	609	21	2		2	PLXNA2	1	208234017	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	10343681	208234017	41016604	40	34133											
PROX1	5629	broad.mit.edu	37	chr1	214171394	214171394	+	Frame_Shift_Del	DEL	G	-	-													ctccctccggctccttctctGgaaaagacagagcctctcct							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	214171394	-	-	214171394	7	5	16	1	0	1	0	1	0	0	0	0	12666	1349	47	0	1518	0	PROX1	1	214171394	Frame_Shift_Del	DEL	G	TCGA-05-4415-01A-22D-1855-08	5937377	214171394	35079227	41	34134											
KCNK2	3776	broad.mit.edu	37	chr1	215368240	215368240	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaattttagcaatacctaGattgtttacttttaagacta	5	5	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215368240	A	A	215368240	1	1	16	0	1	0	0	0	0	0	0	0	8136	957	33	4		4	KCNK2	1	215368240	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1196846	215368240	33882381	42	34135											
USH2A	7399	broad.mit.edu	37	chr1	215822219	215822219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaccatgccaggcactctGggagacacaacatggcattt	10	11	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215822219	T	T	215822219	1	4	16	0	1	0	0	0	0	0	0	0	17162	1363	47	2		2	USH2A	1	215822219	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	453979	215822219	33428402	43	34136											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220373873	220373873	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtacatacaataacgtttaTtgtaccttttttcattttgt	4	6	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220373873	C	C	220373873	1	2	16	0	1	0	0	0	0	0	0	0	13044	1508	52	5		5	RAB3GAP2	1	220373873	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	4551654	220373873	28876748	44	34137											
TAF5L	27097	broad.mit.edu	37	chr1	229738265	229738265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaccgttgttctcactgcGggaggagctgccactggcat	12	12	1	0	rs145984199		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229738265	T	T	229738265	3	4	16	1	0	0	0	0	1	0	0	0	15648	1116	39	1	1134	1	TAF5L	1	229738265	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	9364392	229738265	19512356	45	34138											
RYR2	6262	broad.mit.edu	37	chr1	237801948	237801948	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtaaccacttataataCaatatttgtttacatacttc	2	9	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237801948	A	A	237801948	1	1	16	0	1	0	0	0	0	0	0	0	13880	493	17	3		3	RYR2	1	237801948	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	8063683	237801948	11448673	46	34139											
ZP4	57829	broad.mit.edu	37	chr1	238048146	238048146	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacgctgcagtgcagatgcAcctgggagccaacagaattc	11	12	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048146	T	T	238048146	3	4	16	1	0	0	0	0	1	0	0	0	18347	173	6	5	321	5	ZP4	1	238048146	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	246198	238048146	11202475	47	34140											
OR2C3	81472	broad.mit.edu	37	chr1	247694784	247694784	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaacgacatcccaagtgCcctgtcttccaaggtcactt	7	13	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247694784	A	A	247694784	1	1	16	0	1	0	0	0	0	0	0	0	11087	754	26	3		3	OR2C3	1	247694784	3'UTR	SNP	C	TCGA-05-4415-01A-22D-1855-08	9646638	247694784	1555837	48	34141											
OR2G3	81469	broad.mit.edu	37	chr1	247769300	247769300	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtagtcatcatgaaccCacggctttgccaacagctgg	9	12	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247769300	T	T	247769300	3	4	16	1	0	0	0	0	1	0	0	0	11093	594	21	4	415	4	OR2G3	1	247769300	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	74516	247769300	1481321	49	34142											
OR2T33	391195	broad.mit.edu	37	chr1	248436974	248436975	+	Missense_Mutation	DNP	TG	GA	GA													tgtggagccggtggtcccagTgaatcaggagaatcatgagg					rs150221634	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	248436975	GA	GA	248436974	3	3	16	1	0	0	0	0	1	0	0	0	11118	1696	59	5	822	5	OR2T33	1	248436974	Missense_Mutation	DNP	TG	TCGA-05-4415-01A-22D-1855-08	667674	248436974	813647	50	34143											
MYT1L	23040	broad.mit.edu	37	chr2	1914137	1914137	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcaatcacagaaagcGggttgaatggtcccgcctca	12	11	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1914137	C	C	1914137	1	2	16	0	1	0	0	0	0	0	0	0	10201	1131	39	4		4	MYT1L	2	1914137	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		1914137	241285236	51	34144											
GREB1	9687	broad.mit.edu	37	chr2	11738806	11738806	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatgttctttgtgttgcagGggttttgctggagcttggtc	15	5	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11738806	A	A	11738806	3	1	16	1	0	0	0	0	1	0	0	0	6826	1246	43	4	2315	4	GREB1	2	11738806	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	9824669	11738806	231460567	52	34145											
RAD51AP2	729475	broad.mit.edu	37	chr2	17697597	17697597	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagaaatttcatccatgtCatcaaagtccattaaaaggg	6	7	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17697597	A	A	17697597	3	1	16	1	0	0	0	0	1	0	0	0	13095	826	29	3	1405	3	RAD51AP2	2	17697597	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	5958791	17697597	225501776	53	34146											
DNMT3A	1788	broad.mit.edu	37	chr2	25551437	25551437	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcagagttcatgcgttgTatcttgctgcccgtcccccc	10	14	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25551437	C	C	25551437	1	2	16	0	1	0	0	0	0	0	0	0	4716	1653	57	5		5	DNMT3A	2	25551437	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	7853840	25551437	217647936	54	34147											
CAD	790	broad.mit.edu	37	chr2	27458430	27458430	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgagctgctcccaactgtGcggctactggagagcctggg	15	12	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27458430	T	T	27458430	2	4	16	1	0	0	0	0	0	0	0	1	2591	1306	46	3		3	CAD	2	27458430	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	1906993	27458430	215740943	55	34148											
PLB1	151056	broad.mit.edu	37	chr2	28856009	28856009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacatggctcctttctccCcaaagcccaaagtggcagca	9	14	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28856009	A	A	28856009	1	1	16	0	1	0	0	0	0	0	0	0	12119	638	22	2		2	PLB1	2	28856009	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1397579	28856009	214343364	56	34149											
FSHR	2492	broad.mit.edu	37	chr2	49216164	49216164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaagaatttctttcaattGtgtggatgtttatgttatct	8	4	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49216164	T	T	49216164	3	4	16	1	0	0	0	0	1	0	0	0	6133	1377	48	3	1631	3	FSHR	2	49216164	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	20360155	49216164	193983209	57	34150											
PSME4	23198	broad.mit.edu	37	chr2	54115279	54115279	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caactcaaaatagcctctttAtgaagattttatttttccta	3	8	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54115279	G	G	54115279	1	3	16	0	1	0	0	0	0	0	0	0	12815	464	16	5		5	PSME4	2	54115279	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	4899115	54115279	189084094	58	34151											
ZNF638	27332	broad.mit.edu	37	chr2	71654429	71654429	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gataaaaaagggaatagaaaGaagagagctgtggacacaaa	12	3	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71654429	C	C	71654429	3	2	16	1	0	0	0	0	1	0	0	0	18182	933	33	4	5520	4	ZNF638	2	71654429	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	17539150	71654429	171544944	59	34152											
DYSF	8291	broad.mit.edu	37	chr2	71778333	71778333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggatgccagatgcccagGtccctcaggagcccaggcct	13	15	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71778333	T	T	71778333	1	4	16	0	1	0	0	0	0	0	0	0	4899	1276	44	3		3	DYSF	2	71778333	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	123904	71778333	171421040	60	34153											
DYSF	8291	broad.mit.edu	37	chr2	71797160	71797160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcatgtttctctttgcccCctcttacctccggagacttc	8	15	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71797160	T	T	71797160	1	4	16	0	1	0	0	0	0	0	0	0	4899	638	22	4		4	DYSF	2	71797160	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	18827	71797160	171402213	61	34154											
C2orf78	388960	broad.mit.edu	37	chr2	74043317	74043317	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctcttcctccaggacccTgggaagctcaagcaacaccc	7	16	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74043317	A	A	74043317	3	1	16	1	0	0	0	0	1	0	0	0	2217	1580	55	5	1977	5	C2orf78	2	74043317	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	2246157	74043317	169156056	62	34155											
ACTG2	72	broad.mit.edu	37	chr2	74128468	74128468	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagaccaccgcgctcgtGtgtgacaatggctctggcct	14	12	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74128468	T	T	74128468	2	4	16	1	0	0	0	0	0	0	0	1	197	1364	48	3		3	ACTG2	2	74128468	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	85151	74128468	169070905	63	34156											
REG1A	5967	broad.mit.edu	37	chr2	79350205	79350205	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatgtttggtttttgtcctGagtcctaaagccaggagggt	14	6	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79350205	T	T	79350205	1	4	16	0	1	0	0	0	0	0	0	0	13318	1305	45	3		3	REG1A	2	79350205	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	5221737	79350205	163849168	64	34157											
RETSAT	54884	broad.mit.edu	37	chr2	85572976	85572976	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcgttctcaccttgttgCttaaggacaatcagagggcc	11	10	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85572976	T	T	85572976	1	4	16	0	1	0	0	0	0	0	0	0	13346	812	28	4		4	RETSAT	2	85572976	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	6222771	85572976	157626397	65	34158											
INPP4A	3631	broad.mit.edu	37	chr2	99175841	99175841	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttactgcaagctgctgacGcagctgctgctctgagattg	11	12	1	2	rs142829023	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99175841	C	C	99175841	1	2	16	0	1	0	0	0	0	0	0	0	7822	1102	38	4		4	INPP4A	2	99175841	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	13602865	99175841	144023532	66	34159											
RABL2A	11159	broad.mit.edu	37	chr2	114392758	114392758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgggcaagtctggcctgaGgggtgaggggcctagcagcc	18	10	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114392758	T	T	114392758	1	4	16	0	1	0	0	0	0	0	0	0	13078	1015	35	2		2	RABL2A	2	114392758	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	15216917	114392758	128806615	67	34160											
DPP10	57628	broad.mit.edu	37	chr2	116594355	116594355	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgccgctgctgtttgataGggtatgaccttttacaaagg	11	8	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116594355	C	C	116594355	1	2	16	0	1	0	0	0	0	0	0	0	4767	1015	35	4		4	DPP10	2	116594355	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2201597	116594355	126605018	68	34161											
MYO7B	4648	broad.mit.edu	37	chr2	128347777	128347777	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttacttcatccgctgcatCaaacctaatgagtacaagaa	5	12	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128347777	A	A	128347777	2	1	16	1	0	0	0	0	0	0	0	1	10177	816	29	3		3	MYO7B	2	128347777	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	11753422	128347777	114851596	69	34162											
WDR33	55339	broad.mit.edu	37	chr2	128477085	128477085	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgatccttggggtggaggCccctgcatgcctcggatctc	13	12	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128477085	A	A	128477085	2	1	16	1	0	0	0	0	0	0	0	1	17414	726	26	3		3	WDR33	2	128477085	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	129308	128477085	114722288	70	34163											
CCDC74B	91409	broad.mit.edu	37	chr2	130902638	130902638	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggccgccctagcctgGcgccccgtcaccatggaaac	12	18	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130902638	A	A	130902638	1	1	16	0	1	0	0	0	0	0	0	0	2876	1218	42	4		4	CCDC74B	2	130902638	5'Flank	SNP	G	TCGA-05-4415-01A-22D-1855-08	2425553	130902638	112296735	71	34164											
SMPD4	55627	broad.mit.edu	37	chr2	130910786	130910786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtcagaaaacacagccCcacacacaactcagaggagc	9	13	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130910786	A	A	130910786	1	1	16	0	1	0	0	0	0	0	0	0	14921	638	22	2		2	SMPD4	2	130910786	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	8148	130910786	112288587	72	34165											
FAM123C	205147	broad.mit.edu	37	chr2	131521635	131521635	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggaggccaggtcacggaGgtgacactctggatgcagag	16	10	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131521635	C	C	131521635	3	2	16	1	0	0	0	0	1	0	0	0	5470	1000	35	4	1992	4	FAM123C	2	131521635	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	610849	131521635	111677738	73	34166											
ZRANB3	84083	broad.mit.edu	37	chr2	136107556	136107556	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtataaggattgtaatacctCttcaggccttcctaaagctg	8	9	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136107556	T	T	136107556	3	4	16	1	0	0	0	0	1	0	0	0	18353	922	32	4	2718	4	ZRANB3	2	136107556	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	4585921	136107556	107091817	74	34167											
THSD7B	80731	broad.mit.edu	37	chr2	137928486	137928486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggacatcgtattctgaaGgccgtctgccagaatgaccg	12	11	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137928486	T	T	137928486	3	4	16	1	0	0	0	0	1	0	0	0	16003	991	35	2	1630	2	THSD7B	2	137928486	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1820930	137928486	105270887	75	34168											
THSD7B	80731	broad.mit.edu	37	chr2	137999998	137999998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcttagtctctcaaaaagGcattgacatggtcttttcac	8	10	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137999998	T	T	137999998	1	4	16	0	1	0	0	0	0	0	0	0	16003	1218	42	3		3	THSD7B	2	137999998	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	71512	137999998	105199375	76	34169											
LRP1B	53353	broad.mit.edu	37	chr2	141441481	141441481	+	Intron	DEL	C	-	-													ggtccatgccgggctgcccgCggcttgcccccctggatgtt					rs112362832	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141441481	-	-	141441481	6	5	16	0	1	1	0	1	0	0	0	0	9042	783	27	0		0	LRP1B	2	141441481	Intron	DEL	C	TCGA-05-4415-01A-22D-1855-08	3441483	141441481	101757892	77	34170											
ZEB2	9839	broad.mit.edu	37	chr2	145156362	145156362	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttggagtgtatgaactacTgtgggagtttttagaagatg	14	2	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145156362	A	A	145156362	3	1	16	1	0	0	0	0	1	0	0	0	17750	1580	55	5	1264	5	ZEB2	2	145156362	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	3714881	145156362	98043011	78	34171											
TANC1	85461	broad.mit.edu	37	chr2	159992709	159992709	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctttcccactacaggtccCgtcaggaagcccaagtatgt	8	13	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159992709	G	G	159992709	2	3	16	1	0	0	0	0	0	0	0	1	15663	639	23	4		4	TANC1	2	159992709	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	14836347	159992709	83206664	79	34172											
PSMD14	10213	broad.mit.edu	37	chr2	162224311	162224311	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagatgttaaaacatggccGtgctggagttccaatggaag	12	7	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162224311	A	A	162224311	3	1	16	1	0	0	0	0	1	0	0	0	12803	1145	40	4	147	4	PSMD14	2	162224311	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	2231602	162224311	80975062	80	34173											
KCNH7	90134	broad.mit.edu	37	chr2	163693240	163693240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaataaatgatggcacaGttctgcactctggcatttgc	9	9	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163693240	T	T	163693240	3	4	16	1	0	0	0	0	1	0	0	0	8107	1020	36	3	3602	3	KCNH7	2	163693240	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1468929	163693240	79506133	81	34174											
TLK1	9874	broad.mit.edu	37	chr2	171867901	171867901	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttatacacttcactaaaGccacctctaccaagcagatg	4	14	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171867901	T	T	171867901	2	4	16	1	0	0	0	0	0	0	0	1	16066	958	34	3		3	TLK1	2	171867901	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	8174661	171867901	71331472	82	34175											
SLC25A12	8604	broad.mit.edu	37	chr2	172666787	172666787	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataagttgtggtatcagacCtaggtaaagggacagaatca	11	5	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172666787	A	A	172666787	5	1	16	1	0	0	0	0	0	0	1	0	14588	695	24	2	893	2	SLC25A12	2	172666787	Splice_Site	SNP	C	TCGA-05-4415-01A-22D-1855-08	798886	172666787	70532586	83	34176											
KIAA1715	80856	broad.mit.edu	37	chr2	176812337	176812337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggtggtccaggagataCtggaacttgtggaggagggc	17	6	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176812337	A	A	176812337	3	1	16	1	0	0	0	0	1	0	0	0	8324	565	20	3	729	3	KIAA1715	2	176812337	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	4145550	176812337	66387036	84	34177											
TTN	7273	broad.mit.edu	37	chr2	179477551	179477551	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggttcactgggttcactttCcccagccttattcacagctc	8	14	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179477551	A	A	179477551	4	1	16	1	0	0	0	0	0	1	0	0	16861	864	30	3	58188	3	TTN	2	179477551	Nonsense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2665214	179477551	63721822	85	34178											
CCDC141	285025	broad.mit.edu	37	chr2	179742647	179742647	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attattattttgactttgatGagtatccctgcagaaggtgt	9	5	0	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179742647	A	A	179742647	1	1	16	0	1	0	0	0	0	0	0	0	2801	1305	45	4		4	CCDC141	2	179742647	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	265096	179742647	63456726	86	34179											
ITGA4	3676	broad.mit.edu	37	chr2	182400098	182400098	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttagatattagaaatgaGtatagtagataagagagtgt	11	1	0	5			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182400098	A	A	182400098	1	1	16	0	1	0	0	0	0	0	0	0	7948	1044	36	4		4	ITGA4	2	182400098	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2657451	182400098	60799275	87	34180											
COL3A1	1281	broad.mit.edu	37	chr2	189863365	189863365	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttacataaaatgcactctGatatgggcctaatcatataa	5	7	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189863365	T	T	189863365	1	4	16	0	1	0	0	0	0	0	0	0	3720	1305	45	3		3	COL3A1	2	189863365	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	7463267	189863365	53336008	88	34181											
PGAP1	80055	broad.mit.edu	37	chr2	197757993	197757993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaacattgatacattcTgtatcattttgtatctattg	6	5	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197757993	A	A	197757993	1	1	16	0	1	0	0	0	0	0	0	0	11872	1595	55	5		5	PGAP1	2	197757993	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	7894628	197757993	45441380	89	34182											
SGOL2	151246	broad.mit.edu	37	chr2	201438669	201438669	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaacaagatgaaatttaaAgtcaaccggagaacccaaaa	7	7	1	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201438669	T	T	201438669	3	4	16	1	0	0	0	0	1	0	0	0	14330	69	3	5	3622	5	SGOL2	2	201438669	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	3680676	201438669	41760704	90	34183											
SPAG16	79582	broad.mit.edu	37	chr2	214794564	214794564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttagtcatttagatatgcCactacaagtaaaaataaatc	4	6	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214794564	T	T	214794564	1	4	16	0	1	0	0	0	0	0	0	0	15094	609	21	4		4	SPAG16	2	214794564	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	13355895	214794564	28404809	91	34184											
ABCA12	26154	broad.mit.edu	37	chr2	215820017	215820017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagttgacacagacgtaaGtgatgaaggccattcctgtt	10	8	0	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215820017	T	T	215820017	3	4	16	1	0	0	0	0	1	0	0	0	30	1029	36	3	1529	3	ABCA12	2	215820017	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1025453	215820017	27379356	92	34185											
DNER	92737	broad.mit.edu	37	chr2	230411704	230411704	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttccttttcctgaacactCcaagtcatttgcgtgactct	5	12	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230411704	A	A	230411704	4	1	16	1	0	0	0	0	0	1	0	0	4707	864	30	3	1297	3	DNER	2	230411704	Nonsense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	14591687	230411704	12787669	93	34186											
ALPP	250	broad.mit.edu	37	chr2	233244564	233244564	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgaaccgcaactggtactCggacgccgacgtgcctgcct	13	14	0	1	rs147926516	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233244564	A	A	233244564	4	1	16	1	0	0	0	0	0	1	0	0	548	893	31	3	593	3	ALPP	2	233244564	Nonsense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2832860	233244564	9954809	94	34187											
ALPPL2	251	broad.mit.edu	37	chr2	233274218	233274218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaggatggggggctggcGggaaggggtcacctcttgtc	19	9	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233274218	A	A	233274218	1	1	16	0	1	0	0	0	0	0	0	0	549	1131	39	4		4	ALPPL2	2	233274218	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	29654	233274218	9925155	95	34188											
FBLN2	2199	broad.mit.edu	37	chr3	13678060	13678060	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcccaactatgtccaagtCtccaaaacgtgagtgtcccc	6	16	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13678060	A	A	13678060	2	1	16	1	0	0	0	0	0	0	0	1	5756	900	32	3		3	FBLN2	3	13678060	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08		13678060	184344370	96	34189											
C3orf19	51244	broad.mit.edu	37	chr3	14712602	14712603	+	Frame_Shift_Ins	INS	-	A	A													acggacctagccctgaacatINSacgtcacccactcctgcccc							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14712603	A	A	14712602	7	5	16	1	0	1	1	0	0	0	0	0	2234	1403	49	0	1347	0	C3orf19	3	14712602	Frame_Shift_Ins	INS	-	TCGA-05-4415-01A-22D-1855-08	1034542	14712602	183309828	97	34190											
ZNF620	253639	broad.mit.edu	37	chr3	40553988	40553988	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacctatgggcagggaggctCtcagaggtatctgtccaggt	14	9	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40553988	A	A	40553988	3	1	16	1	0	0	0	0	1	0	0	0	18171	913	32	3	257	3	ZNF620	3	40553988	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	25841386	40553988	157468442	98	34191											
NBEAL2	23218	broad.mit.edu	37	chr3	47043987	47043987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggcgccagtgggagcgcGcccagagtcgtcgggccttc	17	14	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47043987	T	T	47043987	3	4	16	1	0	0	0	0	1	0	0	0	10283	1087	38	3	5404	3	NBEAL2	3	47043987	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	6489999	47043987	150978443	99	34192											
COL7A1	1294	broad.mit.edu	37	chr3	48610962	48610962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaccttcaggccagaaggtCcttggggtcctgcagggcca	13	13	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48610962	A	A	48610962	3	1	16	1	0	0	0	0	1	0	0	0	3736	855	30	3	2380	3	COL7A1	3	48610962	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1566975	48610962	149411468	100	34193											
ACY1	95	broad.mit.edu	37	chr3	52020173	52020173	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctatcagggtgtggcagggTaaagtccaggacacaggact	14	9	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52020173	G	G	52020173	1	3	16	0	1	0	0	0	0	0	0	0	226	1653	57	5		5	ACY1	3	52020173	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	3409211	52020173	146002257	101	34194											
TLR9	54106	broad.mit.edu	37	chr3	52255676	52255676	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgaagctcgttgtacacccAgtctgccactgcgctctgcg	10	16	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52255676	C	C	52255676	3	2	16	1	0	0	0	0	1	0	0	0	16081	188	7	5	446	5	TLR9	3	52255676	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	235503	52255676	145766754	102	34195											
CNTN3	5067	broad.mit.edu	37	chr3	74420314	74420314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcctcagcaccatttaCgctcagaagtgcacttggag	10	12	2	1	rs141670671	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74420314	A	A	74420314	1	1	16	0	1	0	0	0	0	0	0	0	3674	551	19	3		3	CNTN3	3	74420314	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	22164638	74420314	123602116	103	34196											
CADM2	253559	broad.mit.edu	37	chr3	86062539	86062539	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagcaaaatatacctctgGatggacaggaggccgaagaa	12	7	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86062539	T	T	86062539	1	4	16	0	1	0	0	0	0	0	0	0	2593	1189	41	3		3	CADM2	3	86062539	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	11642225	86062539	111959891	104	34197											
PROS1	5627	broad.mit.edu	37	chr3	93619674	93619674	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagactttgatttgagattaTatctgtagccttcggggcat	10	6	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93619674	C	C	93619674	3	2	16	1	0	0	0	0	1	0	0	0	12664	1406	49	5	1365	5	PROS1	3	93619674	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	7557135	93619674	104402756	105	34198											
CCDC54	84692	broad.mit.edu	37	chr3	107096271	107096271	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgctctataagaagctaatCacctaacagtgtctattgct	6	10	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107096271	A	A	107096271	1	1	16	0	1	0	0	0	0	0	0	0	2852	841	29	3		3	CCDC54	3	107096271	5'UTR	SNP	C	TCGA-05-4415-01A-22D-1855-08	13476597	107096271	90926159	106	34199											
MORC1	27136	broad.mit.edu	37	chr3	108836920	108836920	+	5'UTR	SNP	A	C	C													cgtccatgccctcgaacacgAcccgcgcaactcaaggggac							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108836920	C	C	108836920	1	2	16	0	1	0	0	0	0	0	0	0	9795	290	10	5		5	MORC1	3	108836920	5'UTR	SNP	A	TCGA-05-4415-01A-22D-1855-08	1740649	108836920	89185510	107	34200	196	2									
MORC1	27136	broad.mit.edu	37	chr3	108836924	108836924	+	5'UTR	SNP	G	T	T													catgccctcgaacacgacccGcgcaactcaaggggacaagg							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108836924	T	T	108836924	1	4	16	0	1	0	0	0	0	0	0	0	9795	1102	38	3		3	MORC1	3	108836924	5'UTR	SNP	G	TCGA-05-4415-01A-22D-1855-08	4	108836924	89185506	108	34201	196	2									
LSAMP	4045	broad.mit.edu	37	chr3	116163754	116163754	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtccccctgcctcacgGtgatgttgtccgtgcctcgg	12	15	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116163754	A	A	116163754	3	1	16	1	0	0	0	0	1	0	0	0	9135	1261	44	4	919	4	LSAMP	3	116163754	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	7326830	116163754	81858676	109	34202											
MUC13	56667	broad.mit.edu	37	chr3	124632247	124632247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgtgaagctggacatGggctagcaaaggtcccagcc	12	14	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124632247	T	T	124632247	1	4	16	0	1	0	0	0	0	0	0	0	10065	1363	47	2		2	MUC13	3	124632247	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	8468493	124632247	73390183	110	34203											
GMPS	8833	broad.mit.edu	37	chr3	155649570	155649570	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagggtgactgtcgttcctAcagttacgtgtgtggaatct	12	8	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155649570	G	G	155649570	3	3	16	1	0	0	0	0	1	0	0	0	6562	391	14	5	1627	5	GMPS	3	155649570	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	31017323	155649570	42372860	111	34204											
MECOM	2122	broad.mit.edu	37	chr3	169098912	169098912	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttattttgtggatgctTaaacaatctcttctttacac	5	8	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169098912	C	C	169098912	1	2	16	0	1	0	0	0	0	0	0	0	9515	1769	61	5		5	MECOM	3	169098912	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	13449342	169098912	28923518	112	34205											
FNDC3B	64778	broad.mit.edu	37	chr3	172060985	172060985	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgctttgtagttaagtttCaaagctttcttctaaagacc	6	7	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172060985	G	G	172060985	1	3	16	0	1	0	0	0	0	0	0	0	6028	841	29	4		4	FNDC3B	3	172060985	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	2962073	172060985	25961445	113	34206											
ABCC5	10057	broad.mit.edu	37	chr3	183706311	183706311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacactcctagctcaggCcctgcccacccggcatgggg	10	18	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183706311	A	A	183706311	1	1	16	0	1	0	0	0	0	0	0	0	56	754	26	3		3	ABCC5	3	183706311	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	11645326	183706311	14316119	114	34207											
LCORL	254251	broad.mit.edu	37	chr4	17913272	17913272	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcaaagtctgagtcctgtCctctcactctcctccctgga	8	15	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17913272	A	A	17913272	1	1	16	0	1	0	0	0	0	0	0	0	8762	870	30	3		3	LCORL	4	17913272	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08		17913272	173241004	115	34208											
ATP8A1	10396	broad.mit.edu	37	chr4	42592739	42592739	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttttaaaggaagagacaCagaactcaaccatatttggg	10	6	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42592739	T	T	42592739	1	4	16	0	1	0	0	0	0	0	0	0	1196	493	17	4		4	ATP8A1	4	42592739	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	24679467	42592739	148561537	116	34209											
GABRA2	2555	broad.mit.edu	37	chr4	46307719	46307719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataagtgacctctgaagttGtatatgcatctataggaaat	8	5	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46307719	T	T	46307719	3	4	16	1	0	0	0	0	1	0	0	0	6221	1377	48	3	802	3	GABRA2	4	46307719	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3714980	46307719	144846557	117	34210											
LPHN3	23284	broad.mit.edu	37	chr4	62641358	62641358	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taggttgatttggtgttcagCacaaagggcctccaccaact	10	10	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62641358	G	G	62641358	1	3	16	0	1	0	0	0	0	0	0	0	9004	725	25	4		4	LPHN3	4	62641358	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	16333639	62641358	128512918	118	34211											
GNRHR	2798	broad.mit.edu	37	chr4	68619639	68619639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgtgatagccagggagcGgtccaggctgatcaccacca	12	14	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68619639	T	T	68619639	3	4	16	1	0	0	0	0	1	0	0	0	6613	1116	39	1	583	1	GNRHR	4	68619639	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5978281	68619639	122534637	119	34212											
UGT2B15	7366	broad.mit.edu	37	chr4	69535508	69535508	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttacatttgcaattcataaTttcccttaaaaacactatct	1	10	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69535508	A	A	69535508	1	1	16	0	1	0	0	0	0	0	0	0	17084	1508	52	5		5	UGT2B15	4	69535508	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	915869	69535508	121618768	120	34213											
SULT1B1	27284	broad.mit.edu	37	chr4	70596333	70596333	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgtgatggatgatcctatCcaagatctcatcattcaggt	10	8	3	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70596333	T	T	70596333	3	4	16	1	0	0	0	0	1	0	0	0	15494	855	30	4	234	4	SULT1B1	4	70596333	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1060825	70596333	120557943	121	34214											
IGJ	3512	broad.mit.edu	37	chr4	71522923	71522923	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactatggaaaaaaatatatCttacaggtcagacaaatggt	7	5	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71522923	T	T	71522923	1	4	16	0	1	0	0	0	0	0	0	0	7662	928	32	4		4	IGJ	4	71522923	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	926590	71522923	119631353	122	34215											
EREG	2069	broad.mit.edu	37	chr4	75250344	75250344	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcaactttgtcattttGgaaacactatgctaatgtgc	7	8	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75250344	C	C	75250344	1	2	16	0	1	0	0	0	0	0	0	0	5262	1363	47	4		4	EREG	4	75250344	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3727421	75250344	115903932	123	34216											
PPEF2	5470	broad.mit.edu	37	chr4	76781857	76781857	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcagccactgtctttaGcatttgtagcttgtgggcat	11	9	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76781857	A	A	76781857	3	1	16	1	0	0	0	0	1	0	0	0	12404	971	34	4	40	4	PPEF2	4	76781857	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1531513	76781857	114372419	124	34217											
WDFY3	23001	broad.mit.edu	37	chr4	85642649	85642649	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccctcagcaatctggtcTtgtagctgctcctggttctc	9	14	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85642649	C	C	85642649	2	2	16	1	0	0	0	0	0	0	0	1	17397	1606	56	5		5	WDFY3	4	85642649	Silent	SNP	T	TCGA-05-4415-01A-22D-1855-08	8860792	85642649	105511627	125	34218											
WDFY3	23001	broad.mit.edu	37	chr4	85717660	85717660	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accataaaggttggcttcctTgcaaatttcttacccaaacc	5	12	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85717660	G	G	85717660	1	3	16	0	1	0	0	0	0	0	0	0	17397	1827	63	5		5	WDFY3	4	85717660	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	75011	85717660	105436616	126	34219											
PPM1K	152926	broad.mit.edu	37	chr4	89199209	89199209	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccactcaagtaactatgtTtacgctggaagcctcagcca	7	12	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89199209	G	G	89199209	1	3	16	0	1	0	0	0	0	0	0	0	12444	1856	64	5		5	PPM1K	4	89199209	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	3481549	89199209	101955067	127	34220											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99342456	99342456	+	Missense_Mutation	SNP	G	T	T													ttaagttagtggagcgtttgGtggaatggtgtgaagccaaa							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99342456	T	T	99342456	3	4	16	1	0	0	0	0	1	0	0	0	13147	1261	44	3	1400	3	RAP1GDS1	4	99342456	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	10143247	99342456	91811820	128	34221	197	2									
RAP1GDS1	5910	broad.mit.edu	37	chr4	99342458	99342458	+	Silent	SNP	G	T	T													aagttagtggagcgtttggtGgaatggtgtgaagccaaaga							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99342458	T	T	99342458	2	4	16	1	0	0	0	0	0	0	0	1	13147	1335	47	2		2	RAP1GDS1	4	99342458	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	2	99342458	91811818	129	34222	197	2									
ANK2	287	broad.mit.edu	37	chr4	114117535	114117535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcagaatggactcaaCgctctccatctggctgccaa	7	14	5	1	rs146964054	byFrequency;by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114117535	A	A	114117535	3	1	16	1	0	0	0	0	1	0	0	0	621	535	19	3	233	3	ANK2	4	114117535	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	14775077	114117535	77036741	130	34223											
ANK2	287	broad.mit.edu	37	chr4	114278920	114278920	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattcttggagtgaaattcGggaagacgatgaagcctttg	13	5	1	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114278920	T	T	114278920	3	4	16	1	0	0	0	0	1	0	0	0	621	1116	39	1	9361	1	ANK2	4	114278920	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	161385	114278920	76875356	131	34224											
PDE5A	8654	broad.mit.edu	37	chr4	120528482	120528482	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacgtgcagacacattagAtacttgaagaggaagggtgc	13	6	0	5			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120528482	G	G	120528482	1	3	16	0	1	0	0	0	0	0	0	0	11738	348	12	5		5	PDE5A	4	120528482	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	6249562	120528482	70625794	132	34225											
MAML3	55534	broad.mit.edu	37	chr4	141074131	141074131	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggccctctgctccagGgtccgctggtagaggctcac	12	14	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141074131	A	A	141074131	2	1	16	1	0	0	0	0	0	0	0	1	9299	1219	43	4		4	MAML3	4	141074131	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	20545649	141074131	50080145	133	34226											
DCLK2	166614	broad.mit.edu	37	chr4	151125168	151125168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattttaggattttgagcctGgtagacttgacttcgaatcc	10	7	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151125168	T	T	151125168	1	4	16	0	1	0	0	0	0	0	0	0	4325	1363	47	2		2	DCLK2	4	151125168	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	10051037	151125168	40029108	134	34227											
DCHS2	54798	broad.mit.edu	37	chr4	155278316	155278316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatataggtgctttcatgGcctttttggtgaatgcttct	9	8	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155278316	T	T	155278316	1	4	16	0	1	0	0	0	0	0	0	0	4321	1218	42	3		3	DCHS2	4	155278316	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	4153148	155278316	35875960	135	34228											
ODZ3	55714	broad.mit.edu	37	chr4	183713606	183713606	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgcctccatcatcacggaCtacaacgaggaagggctgct	10	13	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183713606	T	T	183713606	2	4	16	1	0	0	0	0	0	0	0	1	10931	564	20	4		4	ODZ3	4	183713606	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	28435290	183713606	7440670	136	34229											
TRIP13	9319	broad.mit.edu	37	chr5	908067	908067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacctggcagtgtggtccCtgcacgttgacactaaaagg	12	11	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	908067	A	A	908067	1	1	16	0	1	0	0	0	0	0	0	0	16682	696	24	2		2	TRIP13	5	908067	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08		908067	180007193	137	34230											
ADCY2	108	broad.mit.edu	37	chr5	7520760	7520760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgagcatgtctcatgctGttctatgcagcctttagtgg	10	8	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7520760	T	T	7520760	1	4	16	0	1	0	0	0	0	0	0	0	294	1392	48	3		3	ADCY2	5	7520760	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	6612693	7520760	173394500	138	34231											
CTNND2	1501	broad.mit.edu	37	chr5	10973545	10973545	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgcacatgcactgttcccgGagcgcctgtgccctgctcct	10	16	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10973545	C	C	10973545	1	2	16	0	1	0	0	0	0	0	0	0	4054	1189	41	4		4	CTNND2	5	10973545	3'UTR	SNP	G	TCGA-05-4415-01A-22D-1855-08	3452785	10973545	169941715	139	34232											
CDH10	1008	broad.mit.edu	37	chr5	24537633	24537633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttaatagcttgtgcgcGtagagtataaaaggcctttt	10	6	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24537633	T	T	24537633	3	4	16	1	0	0	0	0	1	0	0	0	3126	1145	40	3	2024	3	CDH10	5	24537633	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	13564088	24537633	156377627	140	34233											
CDH10	1008	broad.mit.edu	37	chr5	24593348	24593348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcaaatataaacacgtGccattttaacacaagcttac	5	9	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24593348	T	T	24593348	1	4	16	0	1	0	0	0	0	0	0	0	3126	1334	46	3		3	CDH10	5	24593348	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	55715	24593348	156321912	141	34234											
CDH6	1004	broad.mit.edu	37	chr5	31323074	31323074	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttgatatcggcaccctgAggaatcctgaagccatagag	10	10	0	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31323074	G	G	31323074	3	3	16	1	0	0	0	0	1	0	0	0	3144	295	11	5	2074	5	CDH6	5	31323074	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	6729726	31323074	149592186	142	34235											
ADAMTS12	81792	broad.mit.edu	37	chr5	33614470	33614470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgccagggttagtcacCtggaatagaagctaaaaggc	12	7	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33614470	A	A	33614470	3	1	16	1	0	0	0	0	1	0	0	0	257	680	24	2	2420	2	ADAMTS12	5	33614470	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2291396	33614470	147300790	143	34236											
OXCT1	5019	broad.mit.edu	37	chr5	41850032	41850032	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaatgagtgctttttcTcacatagaggtgattttata	8	4	1	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41850032	A	A	41850032	1	1	16	0	1	0	0	0	0	0	0	0	11423	1566	54	5		5	OXCT1	5	41850032	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	8235562	41850032	139065228	144	34237											
GHR	2690	broad.mit.edu	37	chr5	42468602	42468602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactggctctgcagcaggaGgctgggggaccaggacctca	15	12	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42468602	T	T	42468602	1	4	16	0	1	0	0	0	0	0	0	0	6435	1015	35	2		2	GHR	5	42468602	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	618570	42468602	138446658	145	34238											
HCN1	348980	broad.mit.edu	37	chr5	45262155	45262155	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggttcggggggatggctccCgacgacatctgtcggaagag	17	10	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45262155	A	A	45262155	2	1	16	1	0	0	0	0	0	0	0	1	7062	639	23	1		1	HCN1	5	45262155	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	2793553	45262155	135653105	146	34239											
HCN1	348980	broad.mit.edu	37	chr5	45267293	45267293	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtccacggaaagtgagtaaaGacgacaatatgtatcagctc	10	8	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45267293	T	T	45267293	3	4	16	1	0	0	0	0	1	0	0	0	7062	942	33	3	999	3	HCN1	5	45267293	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5138	45267293	135647967	147	34240											
HSPB3	8988	broad.mit.edu	37	chr5	53751521	53751522	+	5'UTR	DNP	GG	TT	TT													aaccactagctgcttcaactGgtaatccagtcagtaggcaa							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	53751522	TT	TT	53751521	1	4	16	0	1	0	0	0	0	0	0	0	7490	1363	47	2		2	HSPB3	5	53751521	5'UTR	DNP	GG	TCGA-05-4415-01A-22D-1855-08	8484228	53751521	127163739	148	34241											
FAM169A	26049	broad.mit.edu	37	chr5	74077851	74077852	+	Intron	DNP	GG	AT	AT													ggtctgaaaattaaaaacctGgtcaacaaataaacttgtac							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	74077852	AT	AT	74077851	1	1	16	0	1	0	0	0	0	0	0	0	5532	1363	47	4		4	FAM169A	5	74077851	Intron	DNP	GG	TCGA-05-4415-01A-22D-1855-08	20326330	74077851	106837409	149	34242											
IQGAP2	10788	broad.mit.edu	37	chr5	75923175	75923175	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctcctcaaaagcagttaTtaattctgtttcctcatcat	5	10	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75923175	C	C	75923175	1	2	16	0	1	0	0	0	0	0	0	0	7885	1508	52	5		5	IQGAP2	5	75923175	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	1845324	75923175	104992085	150	34243											
ZNF608	57507	broad.mit.edu	37	chr5	123982754	123982762	+	In_Frame_Del	DEL	TACTTCTCA	-	-													ccagcctctggtcctcatagTacttctcatactgctgtcta							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123982762	-	-	123982754	7	5	16	1	0	1	0	1	0	0	0	0	18161	1638	57	0	1239	0	ZNF608	5	123982754	In_Frame_Del	DEL	TACTTCTCA	TCGA-05-4415-01A-22D-1855-08	48059579	123982754	56932506	151	34244											
ADAMTS19	171019	broad.mit.edu	37	chr5	128862046	128862046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgatattcatacaaattacCtcaagaatacaacatagaga	4	8	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128862046	A	A	128862046	3	1	16	1	0	0	0	0	1	0	0	0	264	681	24	2	979	2	ADAMTS19	5	128862046	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	4879292	128862046	52053214	152	34245											
FSTL4	23105	broad.mit.edu	37	chr5	132560674	132560674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagggaaggcctgctcacCtctgggtgccctccaattcc	11	16	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132560674	A	A	132560674	1	1	16	0	1	0	0	0	0	0	0	0	6139	696	24	2		2	FSTL4	5	132560674	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	3698628	132560674	48354586	153	34246											
FSTL4	23105	broad.mit.edu	37	chr5	132902931	132902931	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaagaaaagaaagacttTgtgttttctgaagaataatt	8	4	1	5			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132902931	A	A	132902931	1	1	16	0	1	0	0	0	0	0	0	0	6139	1827	63	5		5	FSTL4	5	132902931	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	342257	132902931	48012329	154	34247											
GFRA3	2676	broad.mit.edu	37	chr5	137589715	137589715	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctcaggcctagccaacaTagggttccctacacatgccc	7	17	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137589715	C	C	137589715	1	2	16	0	1	0	0	0	0	0	0	0	6413	1421	49	5		5	GFRA3	5	137589715	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	4686784	137589715	43325545	155	34248											
PCDHA7	56141	broad.mit.edu	37	chr5	140215250	140215250	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagctggtggttaccgcgCgggacgggggctcgccttct	17	11	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140215250	T	T	140215250	3	4	16	1	0	0	0	0	1	0	0	0	11623	759	27	4	1284	4	PCDHA7	5	140215250	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2625535	140215250	40700010	156	34249											
PCDHB5	26167	broad.mit.edu	37	chr5	140516961	140516961	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaaggacaatggcgagCctccgcgctcggccaccgcc	13	16	1	0	rs17844424		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140516961	T	T	140516961	3	4	16	1	0	0	0	0	1	0	0	0	11639	739	26	4	1947	4	PCDHB5	5	140516961	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	301711	140516961	40398299	157	34250											
PCDHB6	56130	broad.mit.edu	37	chr5	140529963	140529963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagacagaaagtggcaCgtttgtggccaacttgacaa	14	7	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140529963	A	A	140529963	3	1	16	1	0	0	0	0	1	0	0	0	11640	536	19	3	127	3	PCDHB6	5	140529963	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	13002	140529963	40385297	158	34251											
PCDHGA1	56114	broad.mit.edu	37	chr5	140710439	140710439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaggagctggcagatggcgGagtccgcatcgtctccagag	15	12	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140710439	T	T	140710439	3	4	16	1	0	0	0	0	1	0	0	0	11644	1174	41	3	190	3	PCDHGA1	5	140710439	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	180476	140710439	40204821	159	34252											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774118	140774118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcgtggagctggcgcccCgctccgcagagcgtggctac	16	15	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140774118	A	A	140774118	3	1	16	1	0	0	0	0	1	0	0	0	11654	652	23	1	1740	1	PCDHGA8	5	140774118	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	63679	140774118	40141142	160	34253											
PCDHGA11	56105	broad.mit.edu	37	chr5	140801564	140801564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgttccagaaaacatcaGctccggaactcgggtgctga	12	10	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140801564	T	T	140801564	3	4	16	1	0	0	0	0	1	0	0	0	11646	971	34	3	772	3	PCDHGA11	5	140801564	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	27446	140801564	40113696	161	34254											
TNIP1	10318	broad.mit.edu	37	chr5	150422356	150422356	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctcctctgggccatactGgggctcagcgtggccactcc	11	16	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150422356	A	A	150422356	1	1	16	0	1	0	0	0	0	0	0	0	16437	1363	47	4		4	TNIP1	5	150422356	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	9620792	150422356	30492904	162	34255											
SLC36A3	285641	broad.mit.edu	37	chr5	150657178	150657178	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctcacggagcctaccaGggagatgaccaagtccaggc	13	13	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150657178	A	A	150657178	2	1	16	1	0	0	0	0	0	0	0	1	14709	991	35	4		4	SLC36A3	5	150657178	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	234822	150657178	30258082	163	34256											
KIF4B	285643	broad.mit.edu	37	chr5	154395153	154395153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaggaaaaggaagaattGgttcgtgaacttcagacagc	11	6	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154395153	T	T	154395153	3	4	16	1	0	0	0	0	1	0	0	0	8374	1339	47	2	1736	2	KIF4B	5	154395153	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3737975	154395153	26520107	164	34257											
KIF4B	285643	broad.mit.edu	37	chr5	154396937	154396937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatcctgaaagagatgtGtgacatggagcaggtgctgt	14	6	0	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154396937	T	T	154396937	3	4	16	1	0	0	0	0	1	0	0	0	8374	1377	48	3	3520	3	KIF4B	5	154396937	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1784	154396937	26518323	165	34258											
ADAM19	8728	broad.mit.edu	37	chr5	156890363	156890363	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggttcctgggccaggagaGgatagggcccagggcagctg	18	9	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156890363	A	A	156890363	1	1	16	0	1	0	0	0	0	0	0	0	240	1015	35	4		4	ADAM19	5	156890363	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2493426	156890363	24024897	166	34259											
SLIT3	6586	broad.mit.edu	37	chr5	168187753	168187753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggctgaggagaaggctgGgagggagtggagcagaggct	23	5	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168187753	T	T	168187753	1	4	16	0	1	0	0	0	0	0	0	0	14855	1247	43	2		2	SLIT3	5	168187753	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	11297390	168187753	12727507	167	34260											
LCP2	3937	broad.mit.edu	37	chr5	169689827	169689827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtcccatgtaccctcatGtagatgcaacagtcttacct	6	13	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169689827	T	T	169689827	1	4	16	0	1	0	0	0	0	0	0	0	8764	1392	48	3		3	LCP2	5	169689827	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1502074	169689827	11225433	168	34261											
NPM1	4869	broad.mit.edu	37	chr5	170815075	170815075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggtgagggtgggggtgaGgggcgggaatccggctgcaa	24	6	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170815075	T	T	170815075	1	4	16	0	1	0	0	0	0	0	0	0	10682	1015	35	2		2	NPM1	5	170815075	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1125248	170815075	10100185	169	34262											
STC2	8614	broad.mit.edu	37	chr5	172755182	172755182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtcatgaactggcccagCcgctcggcacacatggttct	12	13	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172755182	A	A	172755182	2	1	16	1	0	0	0	0	0	0	0	1	15394	726	26	3		3	STC2	5	172755182	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	1940107	172755182	8160078	170	34263											
ADAMTS2	9509	broad.mit.edu	37	chr5	178562885	178562885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacttgacacggtagcccCccgtgccggcctctgtgtac	12	15	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178562885	T	T	178562885	1	4	16	0	1	0	0	0	0	0	0	0	265	638	22	4		4	ADAMTS2	5	178562885	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	5807703	178562885	2352375	171	34264											
GNB2L1	10399	broad.mit.edu	37	chr5	180664968	180664968	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaacagagttactcagacCaaaatgtcattacgtggagg	9	9	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180664968	G	G	180664968	1	3	16	0	1	0	0	0	0	0	0	0	6582	609	21	4		4	GNB2L1	5	180664968	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	2102083	180664968	250292	172	34265											
CDYL	9425	broad.mit.edu	37	chr6	4716036	4716036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatttcaggcaagccacagGtcagcctggggaaaaagcag	12	10	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4716036	T	T	4716036	3	4	16	1	0	0	0	0	1	0	0	0	3215	1276	44	3		3	CDYL	6	4716036	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08		4716036	166399031	173	34266											
RIOK1	83732	broad.mit.edu	37	chr6	7404058	7404058	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaatattataatacatttGagaggccttggtgctatttc	8	5	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7404058	A	A	7404058	1	1	16	0	1	0	0	0	0	0	0	0	13488	1305	45	4		4	RIOK1	6	7404058	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2688022	7404058	163711009	174	34267											
FAM65B	9750	broad.mit.edu	37	chr6	24843714	24843714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgggcaggtcactgaaGctgagcgacagtggcatttt	14	9	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24843714	T	T	24843714	3	4	16	1	0	0	0	0	1	0	0	0	5651	962	34	3	1960	3	FAM65B	6	24843714	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	17439656	24843714	146271353	175	34268											
TRIM39	56658	broad.mit.edu	37	chr6	30297471	30297471	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaccaggaggctgtatGcttgatatgtgcaatttccc	12	8	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30297471	C	C	30297471	3	2	16	1	0	0	0	0	1	0	0	0	16637	1319	46	4	379	4	TRIM39	6	30297471	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5453757	30297471	140817596	176	34269											
ABCF1	23	broad.mit.edu	37	chr6	30545863	30545863	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcagcagcaaaaaaaaaAgcgagatacccgaaaaggca	8	10	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30545863	G	G	30545863	3	3	16	1	0	0	0	0	1	0	0	0	65	72	3	5	241	5	ABCF1	6	30545863	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	248392	30545863	140569204	177	34270											
TCP11	6954	broad.mit.edu	37	chr6	35090040	35090040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctgcctcctgcttgagCaagtccatgtccagagcttc	9	13	1	2	rs142915532	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35090040	A	A	35090040	3	1	16	1	0	0	0	0	1	0	0	0	15835	709	25	3	1103	3	TCP11	6	35090040	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	4544177	35090040	136025027	178	34271											
FGD2	221472	broad.mit.edu	37	chr6	36976674	36976674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccgccctgagtgcaggCctcccgagtccccaggacca	10	18	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36976674	A	A	36976674	3	1	16	1	0	0	0	0	1	0	0	0	5890	739	26	3	139	3	FGD2	6	36976674	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1886634	36976674	134138393	179	34272											
MDGA1	266727	broad.mit.edu	37	chr6	37605236	37605236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcccggcatcaccaccaCtgcaacaggggagaaagagg	12	13	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37605236	A	A	37605236	1	1	16	0	1	0	0	0	0	0	0	0	9499	579	20	3		3	MDGA1	6	37605236	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	628562	37605236	133509831	180	34273											
TDRD6	221400	broad.mit.edu	37	chr6	46658781	46658781	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtcctctgttcagctAcattcctacttctattctac	5	12	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46658781	T	T	46658781	2	4	16	1	0	0	0	0	0	0	0	1	15856	378	14	5		5	TDRD6	6	46658781	Silent	SNP	A	TCGA-05-4415-01A-22D-1855-08	9053545	46658781	124456286	181	34274											
MCM3	4172	broad.mit.edu	37	chr6	52143587	52143587	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttggctatatcctcagCagagaaagagggctgagcat	12	8	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52143587	T	T	52143587	3	4	16	1	0	0	0	0	1	0	0	0	9480	710	25	4	1642	4	MCM3	6	52143587	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	5484806	52143587	118971480	182	34275											
PRIM2	5558	broad.mit.edu	37	chr6	57183296	57183296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttggcaggtgaccagaGgaatgcttcctaccctcatt	12	10	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57183296	T	T	57183296	3	4	16	1	0	0	0	0	1	0	0	0	12597	1000	35	2	55	2	PRIM2	6	57183296	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5039709	57183296	113931771	183	34276											
PHIP	55023	broad.mit.edu	37	chr6	79697925	79697925	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaatgtgctgatatcttaCatctgaagaactactgccat	7	8	2	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79697925	T	T	79697925	5	4	16	1	0	0	0	0	0	0	1	0	11937	492	17	4	3084	4	PHIP	6	79697925	Splice_Site	SNP	C	TCGA-05-4415-01A-22D-1855-08	22514629	79697925	91417142	184	34277											
GJB7	375519	broad.mit.edu	37	chr6	88008864	88008864	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccaagaaaggctttgaaaaGattagcaaaagtgctaatcc	9	7	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88008864	A	A	88008864	1	1	16	0	1	0	0	0	0	0	0	0	6477	957	33	4		4	GJB7	6	88008864	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	8310939	88008864	83106203	185	34278											
C6orf165	154313	broad.mit.edu	37	chr6	88138502	88138502	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caatgtcatcttaatggagcGactgtgaaaactgatgtgtg	11	6	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88138502	A	A	88138502	2	1	16	1	0	0	0	0	0	0	0	1	2364	1045	37	4		4	C6orf165	6	88138502	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	129638	88138502	82976565	186	34279											
CLVS2	134829	broad.mit.edu	37	chr6	123318960	123318960	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggtctctcccctgagacccTggagaaagctcgcctggagc	12	15	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123318960	A	A	123318960	3	1	16	1	0	0	0	0	1	0	0	0	3604	1580	55	5	40	5	CLVS2	6	123318960	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	35180458	123318960	47796107	187	34280											
ALDH8A1	64577	broad.mit.edu	37	chr6	135239695	135239695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagttggtccagaccaagCcagactgcagcttcttagcc	10	13	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135239695	A	A	135239695	3	1	16	1	0	0	0	0	1	0	0	0	505	739	26	3	145	3	ALDH8A1	6	135239695	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	11920735	135239695	35875372	188	34281											
VTA1	51534	broad.mit.edu	37	chr6	142468394	142468394	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcggaagtgccggtggagcGcgagtaggaagtggtgagtt	20	5	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142468394	A	A	142468394	1	1	16	0	1	0	0	0	0	0	0	0	17360	1102	38	4		4	VTA1	6	142468394	5'Flank	SNP	G	TCGA-05-4415-01A-22D-1855-08	7228699	142468394	28646673	189	34282											
SYTL3	94120	broad.mit.edu	37	chr6	159184269	159184269	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttcccgtctgcactgaCgcacaggcctcaggagagaa	12	13	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159184269	T	T	159184269	1	4	16	0	1	0	0	0	0	0	0	0	15603	551	19	4		4	SYTL3	6	159184269	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	16715875	159184269	11930798	190	34283											
WIPI2	26100	broad.mit.edu	37	chr7	5256250	5256250	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaacattcgggacatgaaGgtgctgcatacgatcaggga	12	9	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5256250	A	A	5256250	2	1	16	1	0	0	0	0	0	0	0	1	17498	991	35	4		4	WIPI2	7	5256250	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08		5256250	153882413	191	34284											
DAGLB	221955	broad.mit.edu	37	chr7	6470059	6470059	+	Intron	DEL	T	-	-													ttgaaatatctcaaaatagcTtttttttttaagggaaatat							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6470059	-	-	6470059	6	5	16	0	1	1	0	1	0	0	0	0	4260	1624	56	0		0	DAGLB	7	6470059	Intron	DEL	T	TCGA-05-4415-01A-22D-1855-08	1213809	6470059	152668604	192	34285											
MIOS	54468	broad.mit.edu	37	chr7	7622753	7622753	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttttctgtttttaggaatGgtggaaagcagcagacataa	11	4	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7622753	C	C	7622753	3	2	16	1	0	0	0	0	1	0	0	0	9682	1348	47	4	1408	4	MIOS	7	7622753	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1152694	7622753	151515910	193	34286											
TMEM195	392636	broad.mit.edu	37	chr7	15430203	15430203	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttttcaggttagtgtaaTatactttcacttttctacag	5	6	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15430203	A	A	15430203	1	1	16	0	1	0	0	0	0	0	0	0	16240	1421	49	5		5	TMEM195	7	15430203	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	7807450	15430203	143708460	194	34287											
KLHL7	55975	broad.mit.edu	37	chr7	23163444	23163444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggaaagaaagatacctGctcatcgtgttgttcttgct	9	9	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23163444	T	T	23163444	3	4	16	1	0	0	0	0	1	0	0	0	8465	1319	46	3	175	3	KLHL7	7	23163444	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	7733241	23163444	135975219	195	34288											
C7orf30	115416	broad.mit.edu	37	chr7	23340417	23340417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcatacacgtctatctGcttggccatcctgatacaaa	9	11	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23340417	T	T	23340417	1	4	16	0	1	0	0	0	0	0	0	0	2411	1334	46	3		3	C7orf30	7	23340417	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	176973	23340417	135798246	196	34289											
IGF2BP3	10643	broad.mit.edu	37	chr7	23387344	23387344	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgcattttctttacggtgGacatcgattctgatagtggg	11	9	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23387344	T	T	23387344	2	4	16	1	0	0	0	0	0	0	0	1	7645	1161	41	3		3	IGF2BP3	7	23387344	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	46927	23387344	135751319	197	34290											
EVX1	2128	broad.mit.edu	37	chr7	27282988	27282988	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggcaacccagtagctcGgacaccgagtcggatttcta	12	12	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27282988	T	T	27282988	2	4	16	1	0	0	0	0	0	0	0	1	5336	1103	39	1		1	EVX1	7	27282988	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	3895644	27282988	131855675	198	34291											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31123989	31123989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggatgctgcctactcctcCccacctgcacctggctactc	8	18	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31123989	T	T	31123989	1	4	16	0	1	0	0	0	0	0	0	0	303	638	22	4		4	ADCYAP1R1	7	31123989	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	3841001	31123989	128014674	199	34292											
BBS9	27241	broad.mit.edu	37	chr7	33573434	33573434	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaccagcctagtctggaatAttccagataccacactcttc	5	13	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33573434	T	T	33573434	1	4	16	0	1	0	0	0	0	0	0	0	1347	464	16	5		5	BBS9	7	33573434	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	2449445	33573434	125565229	200	34293											
BBS9	27241	broad.mit.edu	37	chr7	33573735	33573735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatagattatccaaaggtgGccgtctctgcctaagtaccg	10	11	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33573735	T	T	33573735	3	4	16	1	0	0	0	0	1	0	0	0	1347	1203	42	3	2546	3	BBS9	7	33573735	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	301	33573735	125564928	201	34294											
EEPD1	80820	broad.mit.edu	37	chr7	36194118	36194118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacgcgtgccgtggcacGcagcatcgtggagtaccgag	17	11	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36194118	T	T	36194118	3	4	16	1	0	0	0	0	1	0	0	0	4972	1087	38	3	187	3	EEPD1	7	36194118	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	2620383	36194118	122944545	202	34295											
GCK	2645	broad.mit.edu	37	chr7	44187449	44187449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctggggtggaggtcggGgggactgtcagcgagagctg	22	7	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44187449	T	T	44187449	1	4	16	0	1	0	0	0	0	0	0	0	6355	1247	43	2		2	GCK	7	44187449	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	7993331	44187449	114951214	203	34296											
PKD1L1	168507	broad.mit.edu	37	chr7	47906168	47906168	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgatttctgtgtaactcCccatcagctggagggtagaa	10	10	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47906168	T	T	47906168	3	4	16	1	0	0	0	0	1	0	0	0	12059	623	22	4	4740	4	PKD1L1	7	47906168	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	3718719	47906168	111232495	204	34297											
ABCA13	154664	broad.mit.edu	37	chr7	48411995	48411995	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagccaagctaatacagcGgccctttgtaccagcctggt	9	13	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48411995	T	T	48411995	2	4	16	1	0	0	0	0	0	0	0	1	31	1103	39	1		1	ABCA13	7	48411995	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	505827	48411995	110726668	205	34298											
SEPT14	346288	broad.mit.edu	37	chr7	55914407	55914407	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaaaatgattatagtaCatcaaataaattagaattga	6	2	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55914407	G	G	55914407	1	3	16	0	1	0	0	0	0	0	0	0	14176	493	17	4		4	SEPT14	7	55914407	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	7502412	55914407	103224256	206	34299											
CALN1	83698	broad.mit.edu	37	chr7	71252897	71252897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaatgcactggtggtgGgagaagcaggtgtgggaaga	20	4	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71252897	T	T	71252897	1	4	16	0	1	0	0	0	0	0	0	0	2617	1247	43	2		2	CALN1	7	71252897	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	15338490	71252897	87885766	207	34300											
PCLO	27445	broad.mit.edu	37	chr7	82387975	82387975	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgtcaagccagatacaGgcttcaccaatcaaggtctt	7	11	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82387975	T	T	82387975	2	4	16	1	0	0	0	0	0	0	0	1	11677	987	35	2		2	PCLO	7	82387975	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	11135078	82387975	76750688	208	34301											
DBF4	10926	broad.mit.edu	37	chr7	87526732	87526732	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctaactaattaggctagctcGattagtactgttaggttcct	8	8	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87526732	C	C	87526732	1	2	16	0	1	0	0	0	0	0	0	0	4281	1073	37	4		4	DBF4	7	87526732	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	5138757	87526732	71611931	209	34302											
ZNF804B	219578	broad.mit.edu	37	chr7	88966128	88966128	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctgctacccccttccacCcatctcacataacacttcag	3	18	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88966128	A	A	88966128	3	1	16	1	0	0	0	0	1	0	0	0	18300	623	22	2	3846	2	ZNF804B	7	88966128	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1439396	88966128	70172535	210	34303											
PCOLCE	5118	broad.mit.edu	37	chr7	100205337	100205337	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcagtcttattggtgctTataaaactggaggactggac	11	7	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100205337	C	C	100205337	3	2	16	1	0	0	0	0	1	0	0	0	11688	1754	61	5	1120	5	PCOLCE	7	100205337	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	11239209	100205337	58933326	211	34304											
SLC26A4	5172	broad.mit.edu	37	chr7	107334804	107334805	+	Intron	DNP	GG	TT	TT													cagtgagctggaagacacaaGggagaaggacgaatcctttt							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107334805	TT	TT	107334804	1	4	16	0	1	0	0	0	0	0	0	0	14633	1015	35	2		2	SLC26A4	7	107334804	Intron	DNP	GG	TCGA-05-4415-01A-22D-1855-08	7129467	107334804	51803859	212	34305											
SND1	27044	broad.mit.edu	37	chr7	127334986	127334986	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggggcgagagtatggcatGatctaccttggaaaaggtga	15	6	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127334986	T	T	127334986	3	4	16	1	0	0	0	0	1	0	0	0	14958	1290	45	3	343	3	SND1	7	127334986	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	20000182	127334986	31803677	213	34306											
FLNC	2318	broad.mit.edu	37	chr7	128492561	128492561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgttgagtccagggggGgctgctcaggagggttcctg	18	8	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128492561	T	T	128492561	1	4	16	0	1	0	0	0	0	0	0	0	5993	1247	43	2		2	FLNC	7	128492561	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1157575	128492561	30646102	214	34307											
FAM180A	389558	broad.mit.edu	37	chr7	135418891	135418891	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttcaaagtcttctttcttGaggatgccagggtggctgga	12	8	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135418891	T	T	135418891	2	4	16	1	0	0	0	0	0	0	0	1	5552	1277	45	3		3	FAM180A	7	135418891	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	6926330	135418891	23719772	215	34308											
RAB19	401409	broad.mit.edu	37	chr7	140125496	140125496	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcgccattgcactccagCctgggcgacaagagtgaaac	11	12	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140125496	T	T	140125496	1	4	16	0	1	0	0	0	0	0	0	0	13012	754	26	4		4	RAB19	7	140125496	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	4706605	140125496	19013167	216	34309											
DENND2A	27147	broad.mit.edu	37	chr7	140301269	140301269	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcacagaggaaggtgggggaGaggagggcagaggcggggga	24	4	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140301269	C	C	140301269	3	2	16	1	0	0	0	0	1	0	0	0	4469	942	33	4	2172	4	DENND2A	7	140301269	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	175773	140301269	18837394	217	34310											
TRYX3	136541	broad.mit.edu	37	chr7	141952343	141952343	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacacacagcatattttcCgtgatgttgtaggttttata	7	9	0	1	rs150069777		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141952343	T	T	141952343	2	4	16	1	0	0	0	0	0	0	0	1	16729	639	23	4		4	TRYX3	7	141952343	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	1651074	141952343	17186320	218	34311											
ARHGEF5	7984	broad.mit.edu	37	chr7	144075972	144075972	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgacggtaagcgggagcAtgcgtgagcagcaggccagg	18	9	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144075972	G	G	144075972	1	3	16	0	1	0	0	0	0	0	0	0	911	232	8	5		5	ARHGEF5	7	144075972	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	2123629	144075972	15062691	219	34312											
ZNF777	27153	broad.mit.edu	37	chr7	149152475	149152475	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttcttttcatttgtcccCgtcctgccttccagggtcag	7	14	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149152475	A	A	149152475	2	1	16	1	0	0	0	0	0	0	0	1	18279	639	23	1		1	ZNF777	7	149152475	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	5076503	149152475	9986188	220	34313											
ZNF746	155061	broad.mit.edu	37	chr7	149174757	149174757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggctgcccacgcctccaCgcccagggcctgctgctcct	10	22	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149174757	A	A	149174757	3	1	16	1	0	0	0	0	1	0	0	0	18258	536	19	3	1339	3	ZNF746	7	149174757	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	22282	149174757	9963906	221	34314											
ZNF467	168544	broad.mit.edu	37	chr7	149461930	149461930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcaccaggtgggtcttgCggctgaagctctttccgcac	13	14	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149461930	A	A	149461930	3	1	16	1	0	0	0	0	1	0	0	0	18054	768	27	3	130	3	ZNF467	7	149461930	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	287173	149461930	9676733	222	34315											
NOS3	4846	broad.mit.edu	37	chr7	150695563	150695563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccccaccatgccaggccCcagccttcttccccaaggca	7	22	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150695563	A	A	150695563	1	1	16	0	1	0	0	0	0	0	0	0	10639	638	22	2		2	NOS3	7	150695563	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1233633	150695563	8443100	223	34316											
MNX1	3110	broad.mit.edu	37	chr7	156802314	156802314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaggatgcgcgaggccCtcccgccacgcgcatccacg	15	16	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156802314	A	A	156802314	1	1	16	0	1	0	0	0	0	0	0	0	9773	696	24	2		2	MNX1	7	156802314	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	6106751	156802314	2336349	224	34317											
DEFA6	1671	broad.mit.edu	37	chr8	6782269	6782269	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagttgatggcaatgtAtaggacacacgacagtttcc	9	8	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6782269	G	G	6782269	1	3	16	0	1	0	0	0	0	0	0	0	4426	464	16	5		5	DEFA6	8	6782269	3'UTR	SNP	A	TCGA-05-4415-01A-22D-1855-08		6782269	139581753	225	34318											
RP1L1	94137	broad.mit.edu	37	chr8	10470400	10470400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtccagatttcatacttgGgccctggctgcccgcctcgg	11	15	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10470400	T	T	10470400	3	4	16	1	0	0	0	0	1	0	0	0	13644	1232	43	2	5998	2	RP1L1	8	10470400	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3688131	10470400	135893622	226	34319											
MTMR9	66036	broad.mit.edu	37	chr8	11177238	11177238	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacgatgtctttgtggtcCtgggttaatcagcccagtga	12	8	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11177238	T	T	11177238	2	4	16	1	0	0	0	0	0	0	0	1	10044	668	24	4		4	MTMR9	8	11177238	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	706838	11177238	135186784	227	34320											
BLK	640	broad.mit.edu	37	chr8	11414365	11414365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggtgccccccgcagagCcgcatcctcagagcgaggcg	15	15	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11414365	A	A	11414365	1	1	16	0	1	0	0	0	0	0	0	0	1450	754	26	3		3	BLK	8	11414365	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	237127	11414365	134949657	228	34321											
XPO7	23039	broad.mit.edu	37	chr8	21851870	21851870	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacatttttgccttctactAcagcgaactctagttggcct	6	12	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21851870	G	G	21851870	1	3	16	0	1	0	0	0	0	0	0	0	17576	406	14	5		5	XPO7	8	21851870	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	10437505	21851870	124512152	229	34322											
SCARA3	51435	broad.mit.edu	37	chr8	27514324	27514324	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaagtggactctctctcCgaagacatctccttgaccca	7	13	3	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27514324	A	A	27514324	2	1	16	1	0	0	0	0	0	0	0	1	13991	639	23	1		1	SCARA3	8	27514324	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	5662454	27514324	118849698	230	34323											
ZMAT4	79698	broad.mit.edu	37	chr8	40532360	40532360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggctgcacagagcccaCagtatctgtctgaatctctt	8	13	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40532360	A	A	40532360	3	1	16	1	0	0	0	0	1	0	0	0	17820	478	17	3	261	3	ZMAT4	8	40532360	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	13018036	40532360	105831662	231	34324											
FNTA	2339	broad.mit.edu	37	chr8	42940031	42940031	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaagcattagaggtaagcTggtggggctcagtgctgtca	14	6	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42940031	G	G	42940031	1	3	16	0	1	0	0	0	0	0	0	0	6035	1595	55	5		5	FNTA	8	42940031	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	2407671	42940031	103423991	232	34325											
CRISPLD1	83690	broad.mit.edu	37	chr8	75898471	75898471	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatccaacagcctctaatatGgagtatatggtaaggacatt	8	7	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75898471	A	A	75898471	3	1	16	1	0	0	0	0	1	0	0	0	3914	1348	47	4	251	4	CRISPLD1	8	75898471	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	32958440	75898471	70465551	233	34326											
ZNF704	619279	broad.mit.edu	37	chr8	81571991	81571991	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcggagctttaagctcttaTtaccaaaggaggacctcaga	9	9	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81571991	C	C	81571991	1	2	16	0	1	0	0	0	0	0	0	0	18234	1508	52	5		5	ZNF704	8	81571991	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	5673520	81571991	64792031	234	34327											
CNBD1	168975	broad.mit.edu	37	chr8	87917456	87917456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgaaagcaaggttgatGggtgtgtatgagtgtgcttg	15	3	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87917456	T	T	87917456	1	4	16	0	1	0	0	0	0	0	0	0	3623	1363	47	2		2	CNBD1	8	87917456	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	6345465	87917456	58446566	235	34328											
RGS22	26166	broad.mit.edu	37	chr8	101016380	101016380	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaacacaacagattgtttaCaattttaagtagagaaactg	6	5	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101016380	G	G	101016380	1	3	16	0	1	0	0	0	0	0	0	0	13414	493	17	4		4	RGS22	8	101016380	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	13098924	101016380	45347642	236	34329											
RIMS2	9699	broad.mit.edu	37	chr8	104898392	104898392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggaggaattggcttccaCgcctgaatatacaagttgtg	12	7	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104898392	A	A	104898392	3	1	16	1	0	0	0	0	1	0	0	0	13479	536	19	3	1705	3	RIMS2	8	104898392	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	3882012	104898392	41465630	237	34330											
LRP12	29967	broad.mit.edu	37	chr8	105503016	105503016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcgctcacaggggccatctCgattacttggccttactcca	9	14	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105503016	A	A	105503016	3	1	16	1	0	0	0	0	1	0	0	0	9041	884	31	3	118	3	LRP12	8	105503016	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	604624	105503016	40861006	238	34331											
PKHD1L1	93035	broad.mit.edu	37	chr8	110516570	110516570	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaggttcaacatttgttGgatttaagaatgtttgttca	8	3	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110516570	T	T	110516570	4	4	16	1	0	0	0	0	0	1	0	0	12067	1349	47	2	11113	2	PKHD1L1	8	110516570	Nonsense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5013554	110516570	35847452	239	34332											
FER1L6	654463	broad.mit.edu	37	chr8	125025722	125025723	+	Missense_Mutation	DNP	CC	AA	AA													tcaagatttcacaggaggcaCctgaagagaaaatgaaaaca							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	125025723	AA	AA	125025722	3	1	16	1	0	0	0	0	1	0	0	0	5872	507	18	3	1927	3	FER1L6	8	125025722	Missense_Mutation	DNP	CC	TCGA-05-4415-01A-22D-1855-08	14509152	125025722	21338300	240	34333											
FER1L6	654463	broad.mit.edu	37	chr8	125074047	125074047	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggctttgggtctgcccaTggaagggtcaccaggcccct	14	13	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125074047	A	A	125074047	1	1	16	0	1	0	0	0	0	0	0	0	5872	1479	51	5		5	FER1L6	8	125074047	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	48325	125074047	21289975	241	34334											
MAPK15	225689	broad.mit.edu	37	chr8	144804160	144804160	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgcccctccaatgtccaGttcaaatctctcgaggacct	6	15	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144804160	A	A	144804160	1	1	16	0	1	0	0	0	0	0	0	0	9369	1044	36	4		4	MAPK15	8	144804160	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	19730113	144804160	1559862	242	34335											
EPPK1	83481	broad.mit.edu	37	chr8	144947001	144947001	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagggccctgtccacaaCctccttcccgatggcctgaa	8	19	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144947001	T	T	144947001	3	4	16	1	0	0	0	0	1	0	0	0	5232	507	18	4	6845	4	EPPK1	8	144947001	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	142841	144947001	1417021	243	34336											
GLDC	2731	broad.mit.edu	37	chr9	6639473	6639473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagcaccagattaaacaGgctgtgaagaagctctatga	9	8	1	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6639473	T	T	6639473	1	4	16	0	1	0	0	0	0	0	0	0	6497	1015	35	2		2	GLDC	9	6639473	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		6639473	134573958	244	34337											
PTPRD	5789	broad.mit.edu	37	chr9	8636710	8636710	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctaatacctcaaatctctGattgctgactttctttcctt	3	12	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8636710	C	C	8636710	3	2	16	1	0	0	0	0	1	0	0	0	12907	1299	45	4	5743	4	PTPRD	9	8636710	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1997237	8636710	132576721	245	34338											
C9orf93	203238	broad.mit.edu	37	chr9	15777827	15777827	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccatgtgcccattacggtAtgtatacactttcatttagt	8	9	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15777827	T	T	15777827	1	4	16	0	1	0	0	0	0	0	0	0	2532	464	16	5		5	C9orf93	9	15777827	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	7141117	15777827	125435604	246	34339											
HAUS6	54801	broad.mit.edu	37	chr9	19102703	19102703	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcgcaagcccaggggactCggagggccctcaagatccct	13	14	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19102703	T	T	19102703	1	4	16	0	1	0	0	0	0	0	0	0	7036	899	31	4		4	HAUS6	9	19102703	5'UTR	SNP	C	TCGA-05-4415-01A-22D-1855-08	3324876	19102703	122110728	247	34340											
C9orf72	203228	broad.mit.edu	37	chr9	27560172	27560172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaatgacaatccatgatAtatcatcagtcttaaagagt	5	6	3	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27560172	G	G	27560172	1	3	16	0	1	0	0	0	0	0	0	0	2521	464	16	5		5	C9orf72	9	27560172	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	8457469	27560172	113653259	248	34341											
ZCCHC7	84186	broad.mit.edu	37	chr9	37356780	37356780	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttacacttaggaaagctcAgcatggactgtttagctgct	9	8	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37356780	T	T	37356780	1	4	16	0	1	0	0	0	0	0	0	0	17719	203	7	5		5	ZCCHC7	9	37356780	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	9796608	37356780	103856651	249	34342											
C9orf135	138255	broad.mit.edu	37	chr9	72472765	72472765	+	Intron	DEL	T	-	-													ctaaattagttttacatggcTttgaaagtttacacattaca							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72472765	-	-	72472765	6	5	16	0	1	1	0	1	0	0	0	0	2484	1624	56	0		0	C9orf135	9	72472765	Intron	DEL	T	TCGA-05-4415-01A-22D-1855-08	35115985	72472765	68740666	250	34343											
RASEF	158158	broad.mit.edu	37	chr9	85608024	85608024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaacagcaacagcaattaCcattttccctttgcctcctt	3	14	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85608024	A	A	85608024	1	1	16	0	1	0	0	0	0	0	0	0	13176	522	18	3		3	RASEF	9	85608024	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	13135259	85608024	55605407	251	34344											
SHC3	53358	broad.mit.edu	37	chr9	91653240	91653241	+	Intron	DNP	CC	AA	AA													tgaccagcaacaagtcaatcCcaagaagagcaaatgataaa							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	91653241	AA	AA	91653240	1	1	16	0	1	0	0	0	0	0	0	0	14385	638	22	2		2	SHC3	9	91653240	Intron	DNP	CC	TCGA-05-4415-01A-22D-1855-08	6045216	91653240	49560191	252	34345											
CTSL2	1515	broad.mit.edu	37	chr9	99799533	99799533	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatctgacgctgtctcaCctgattcttcactggcgtca	8	13	5	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99799533	A	A	99799533	5	1	16	1	0	0	0	0	0	0	1	0	4073	521	18	3	627	3	CTSL2	9	99799533	Splice_Site	SNP	C	TCGA-05-4415-01A-22D-1855-08	8146293	99799533	41413898	253	34346											
ANKS6	203286	broad.mit.edu	37	chr9	101552330	101552330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcaatcctcagcttaagCcacataaacacaatttgggg	8	10	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101552330	A	A	101552330	1	1	16	0	1	0	0	0	0	0	0	0	692	754	26	3		3	ANKS6	9	101552330	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1752797	101552330	39661101	254	34347											
IKBKAP	8518	broad.mit.edu	37	chr9	111663784	111663784	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaactcatcatatacTgcaaatgacgtgatatttga	5	6	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111663784	A	A	111663784	2	1	16	1	0	0	0	0	0	0	0	1	7680	1567	55	5		5	IKBKAP	9	111663784	Silent	SNP	T	TCGA-05-4415-01A-22D-1855-08	10111454	111663784	29549647	255	34348											
SVEP1	79987	broad.mit.edu	37	chr9	113141747	113141747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccatattgataatgtaCgcctcgagcaattgcatttt	7	9	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113141747	A	A	113141747	3	1	16	1	0	0	0	0	1	0	0	0	15538	536	19	3	447	3	SVEP1	9	113141747	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1477963	113141747	28071684	256	34349											
NDUFA8	4702	broad.mit.edu	37	chr9	124914622	124914622	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagcataaactccttgttGggcttatcacattgagctcc	8	11	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124914622	T	T	124914622	2	4	16	1	0	0	0	0	0	0	0	1	10366	1335	47	2		2	NDUFA8	9	124914622	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	11772875	124914622	16298809	257	34350											
SPTAN1	6709	broad.mit.edu	37	chr9	131347078	131347078	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgctggacatgaaccacGcatcaaagcagttacacaga	8	10	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131347078	A	A	131347078	3	1	16	1	0	0	0	0	1	0	0	0	15235	1087	38	4	2582	4	SPTAN1	9	131347078	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	6432456	131347078	9866353	258	34351											
NUP188	23511	broad.mit.edu	37	chr9	131745599	131745599	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtgatctccccacctgtGgatgtcattgcttcttgtgt	9	11	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131745599	A	A	131745599	2	1	16	1	0	0	0	0	0	0	0	1	10853	1335	47	4		4	NUP188	9	131745599	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	398521	131745599	9467832	259	34352											
NCS1	23413	broad.mit.edu	37	chr9	132982108	132982108	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcccccttggccctgtGtggcagcagctggagggccc	14	16	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132982108	C	C	132982108	1	2	16	0	1	0	0	0	0	0	0	0	10335	1392	48	4		4	NCS1	9	132982108	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1236509	132982108	8231323	260	34353											
KIAA1217	56243	broad.mit.edu	37	chr10	24832238	24832238	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatcacgacagattttggcCaagttgttctaagacccaag	8	9	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24832238	G	G	24832238	3	3	16	1	0	0	0	0	1	0	0	0	8286	595	21	4	4113	4	KIAA1217	10	24832238	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08		24832238	110702509	261	34354											
MYO3A	53904	broad.mit.edu	37	chr10	26482247	26482248	+	Intron	DNP	GG	TT	TT													attatctacttcatgtaagtGgctcactcttactatcagat							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26482248	TT	TT	26482247	1	4	16	0	1	0	0	0	0	0	0	0	10170	1363	47	2		2	MYO3A	10	26482247	Intron	DNP	GG	TCGA-05-4415-01A-22D-1855-08	1650009	26482247	109052500	262	34355											
GJD4	219770	broad.mit.edu	37	chr10	35896766	35896766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcgccgcgctgggccccCgccgctgccccgacccccgg	13	24	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35896766	A	A	35896766	3	1	16	1	0	0	0	0	1	0	0	0	6483	652	23	1	331	1	GJD4	10	35896766	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	9414519	35896766	99637981	263	34356											
PCDH15	65217	broad.mit.edu	37	chr10	55755478	55755478	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgcatccggagccaccatCcctttgtatattcgtttact	6	13	0	0	rs139853291	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55755478	A	A	55755478	2	1	16	1	0	0	0	0	0	0	0	1	11605	842	30	3		3	PCDH15	10	55755478	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	19858712	55755478	79779269	264	34357											
CDH23	64072	broad.mit.edu	37	chr10	73521842	73521842	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctactcctggcaaccCcagagcggggaagaacctta	11	13	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73521842	G	G	73521842	1	3	16	0	1	0	0	0	0	0	0	0	3138	638	22	4		4	CDH23	10	73521842	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	17766364	73521842	62012905	265	34358											
KCNMA1	3778	broad.mit.edu	37	chr10	78771774	78771774	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggatctgtgatgtcatcAtgacaggccttgcagtaaaa	11	7	3	2	rs146803262		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78771774	G	G	78771774	2	3	16	1	0	0	0	0	0	0	0	1	8143	214	8	5		5	KCNMA1	10	78771774	Silent	SNP	A	TCGA-05-4415-01A-22D-1855-08	5249932	78771774	56762973	266	34359											
NRG3	10718	broad.mit.edu	37	chr10	84711186	84711186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatagttgctgatgcacccCgctagcatccattctaattt	7	11	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84711186	A	A	84711186	1	1	16	0	1	0	0	0	0	0	0	0	10744	667	23	1		1	NRG3	10	84711186	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	5939412	84711186	50823561	267	34360											
GHITM	27069	broad.mit.edu	37	chr10	85901135	85901135	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttgttccttgactctgaCtctcatatgtccttctctta	5	11	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85901135	T	T	85901135	1	4	16	0	1	0	0	0	0	0	0	0	6434	580	20	4		4	GHITM	10	85901135	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1189949	85901135	49633612	268	34361											
CDHR1	92211	broad.mit.edu	37	chr10	85961609	85961609	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgccacagcggtgtgctgcGcctccaggctggggccactc	14	17	0	0	rs142631189		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85961609	C	C	85961609	3	2	16	1	0	0	0	0	1	0	0	0	3148	1087	38	4	598	4	CDHR1	10	85961609	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	60474	85961609	49573138	269	34362											
PI4K2A	55361	broad.mit.edu	37	chr10	99358794	99358794	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	accttcgcttggcccagtgtCctggtccaggcctccttctg	10	16	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99358794	G	G	99358794	1	3	16	0	1	0	0	0	0	0	0	0	11966	870	30	4		4	PI4K2A	10	99358794	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	13397185	99358794	36175953	270	34363											
PDZD7	79955	broad.mit.edu	37	chr10	102781508	102781508	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactagggtggtctgggaaGcccctactctagcctcacct	11	13	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102781508	A	A	102781508	1	1	16	0	1	0	0	0	0	0	0	0	11798	986	34	4		4	PDZD7	10	102781508	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3422714	102781508	32753239	271	34364											
PSD	5662	broad.mit.edu	37	chr10	104170785	104170785	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctggccaggggtttgtttTccggctcctgcccgcccgcc	13	16	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104170785	A	A	104170785	1	1	16	0	1	0	0	0	0	0	0	0	12752	1798	62	5		5	PSD	10	104170785	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	1389277	104170785	31363962	272	34365											
XPNPEP1	7511	broad.mit.edu	37	chr10	111667332	111667332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagatccccatagcaagCcctggaagggcttggttgtg	12	11	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111667332	A	A	111667332	1	1	16	0	1	0	0	0	0	0	0	0	17569	754	26	3		3	XPNPEP1	10	111667332	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	7496547	111667332	23867415	273	34366											
ATRNL1	26033	broad.mit.edu	37	chr10	117185778	117185778	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgtgactctgaaaatcgCtatgttggtaatccacttag	9	7	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117185778	T	T	117185778	2	4	16	1	0	0	0	0	0	0	0	1	1211	784	28	4		4	ATRNL1	10	117185778	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	5518446	117185778	18348969	274	34367											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199271	118199271	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacaggaagaatccagacGgtggccttttaggggcatta	13	7	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118199271	A	A	118199271	1	1	16	0	1	0	0	0	0	0	0	0	12247	1131	39	4		4	PNLIPRP3	10	118199271	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1013493	118199271	17335476	275	34368											
HSPA12A	259217	broad.mit.edu	37	chr10	118441194	118441194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgagtggtctttagaaccCactgagtttgaacattttcc	8	9	1	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118441194	A	A	118441194	1	1	16	0	1	0	0	0	0	0	0	0	7473	609	21	2		2	HSPA12A	10	118441194	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	241923	118441194	17093553	276	34369											
BTBD16	118663	broad.mit.edu	37	chr10	124058702	124058702	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggggatgggagaaagtaGgggccaggctggggagggag	25	3	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124058702	A	A	124058702	1	1	16	0	1	0	0	0	0	0	0	0	1550	1015	35	4		4	BTBD16	10	124058702	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	5617508	124058702	11476045	277	34370											
DMBT1	1755	broad.mit.edu	37	chr10	124336238	124336238	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctggtgttatctgctcaGgtaggcatccagatctctgg	12	9	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124336238	A	A	124336238	3	1	16	1	0	0	0	0	1	0	0	0	4617	1014	35	4	633	4	DMBT1	10	124336238	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	277536	124336238	11198509	278	34371											
LHPP	64077	broad.mit.edu	37	chr10	126186509	126186509	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttcttcaaggcccttgActcttgggggcacatttggg	12	11	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126186509	G	G	126186509	1	3	16	0	1	0	0	0	0	0	0	0	8841	290	10	5		5	LHPP	10	126186509	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	1850271	126186509	9348238	279	34372											
JAKMIP3	282973	broad.mit.edu	37	chr10	133967582	133967582	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcccagcagtgcctcaggtGcccatgtgggccaggtcgca	14	14	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133967582	C	C	133967582	1	2	16	0	1	0	0	0	0	0	0	0	8012	1334	46	4		4	JAKMIP3	10	133967582	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	7781073	133967582	1567165	280	34373											
BRSK2	9024	broad.mit.edu	37	chr11	1457240	1457240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgcaggcaccctgggtgGgtctgagcgcggctgcttct	16	13	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1457240	T	T	1457240	1	4	16	0	1	0	0	0	0	0	0	0	1533	1247	43	2		2	BRSK2	11	1457240	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		1457240	133549276	281	34374											
OR51E2	81285	broad.mit.edu	37	chr11	4703755	4703755	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatggctgcaagcatgcAgagaaagaggtacatcggag	14	7	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4703755	C	C	4703755	3	2	16	1	0	0	0	0	1	0	0	0	11189	188	7	5	779	5	OR51E2	11	4703755	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	3246515	4703755	130302761	282	34375											
OR51G2	81282	broad.mit.edu	37	chr11	4936863	4936863	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtagcagaaacgctgcTgctgctgtttcccagggatc	13	10	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4936863	A	A	4936863	3	1	16	1	0	0	0	0	1	0	0	0	11193	1580	55	5	917	5	OR51G2	11	4936863	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	233108	4936863	130069653	283	34376											
OR56A3	390083	broad.mit.edu	37	chr11	5968810	5968810	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggacatcgtgctctgCctcactgtcatccccaaggt	9	15	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5968810	A	A	5968810	4	1	16	1	0	0	0	0	0	1	0	0	11228	747	26	3	236	3	OR56A3	11	5968810	Nonsense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1031947	5968810	129037706	284	34377											
PTH	5741	broad.mit.edu	37	chr11	13514029	13514029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttttcatggctctcaaCcaagacattgtcttcctttt	4	11	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13514029	A	A	13514029	3	1	16	1	0	0	0	0	1	0	0	0	12863	507	18	3	80	3	PTH	11	13514029	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	7545219	13514029	121492487	285	34378											
MRGPRX4	117196	broad.mit.edu	37	chr11	18195827	18195827	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagagcaacactgtcctgCcacccttgacaattacatgc	7	13	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18195827	T	T	18195827	1	4	16	0	1	0	0	0	0	0	0	0	9863	753	26	4		4	MRGPRX4	11	18195827	3'UTR	SNP	C	TCGA-05-4415-01A-22D-1855-08	4681798	18195827	116810689	286	34379											
LIN7C	55327	broad.mit.edu	37	chr11	27523568	27523568	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcaagggcaaataataTacagacaatcgaggggaaaa	9	7	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27523568	C	C	27523568	1	2	16	0	1	0	0	0	0	0	0	0	8885	1421	49	5		5	LIN7C	11	27523568	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	9327741	27523568	107482948	287	34380											
C11orf74	119710	broad.mit.edu	37	chr11	36669581	36669581	+	Missense_Mutation	SNP	C	G	G													aacagatttgctgctgcttcCaggagaagtggagcaggatg							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36669581	G	G	36669581	3	3	16	1	0	0	0	0	1	0	0	0	1674	594	21	4	388	4	C11orf74	11	36669581	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	9146013	36669581	98336935	288	34381	198	2									
C11orf74	119710	broad.mit.edu	37	chr11	36669586	36669586	+	Missense_Mutation	SNP	G	A	A													atttgctgctgcttccaggaGaagtggagcaggatgtaagc							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36669586	A	A	36669586	3	1	16	1	0	0	0	0	1	0	0	0	1674	943	33	4	393	4	C11orf74	11	36669586	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5	36669586	98336930	289	34382	198	2									
MAPK8IP1	9479	broad.mit.edu	37	chr11	45925993	45925993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcccctcctcaattcacGcttgctttccagccctggcc	6	19	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45925993	T	T	45925993	1	4	16	0	1	0	0	0	0	0	0	0	9376	1102	38	3		3	MAPK8IP1	11	45925993	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	9256407	45925993	89080523	290	34383											
DGKZ	8525	broad.mit.edu	37	chr11	46388906	46388906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacccctggggccccgtGcagcgagtcagagcggcaga	15	16	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46388906	T	T	46388906	3	4	16	1	0	0	0	0	1	0	0	0	4514	1319	46	3	1244	3	DGKZ	11	46388906	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	462913	46388906	88617610	291	34384											
OR5L2	26338	broad.mit.edu	37	chr11	55595361	55595361	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctacctgctaattctcAccactatcctgaagatacac	3	16	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55595361	G	G	55595361	3	3	16	1	0	0	0	0	1	0	0	0	11265	159	6	5	669	5	OR5L2	11	55595361	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	9206455	55595361	79411155	292	34385											
SPRYD5	84767	broad.mit.edu	37	chr11	55653690	55653690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccacaagaaccagatgctGgaaggttagtaccgtatgac	10	9	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55653690	T	T	55653690	3	4	16	1	0	0	0	0	1	0	0	0	15229	1357	47	2	509	2	SPRYD5	11	55653690	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	58329	55653690	79352826	293	34386											
OR5W2	390148	broad.mit.edu	37	chr11	55681357	55681357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtagagagagctttgaaCctcccctcagcagagtgtat	10	10	1	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55681357	A	A	55681357	3	1	16	1	0	0	0	0	1	0	0	0	11279	506	18	3	232	3	OR5W2	11	55681357	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	27667	55681357	79325159	294	34387											
OR10V1	390201	broad.mit.edu	37	chr11	59480952	59480952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacagatcgctataaactGgtcataagccatgactacca	8	10	1	3	rs499037	byFrequency;by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59480952	T	T	59480952	3	4	16	1	0	0	0	0	1	0	0	0	11014	1357	47	2	566	2	OR10V1	11	59480952	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3799595	59480952	75525564	295	34388											
MS4A15	219995	broad.mit.edu	37	chr11	60543033	60543033	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actattgaaccactaccctgAagctccagcgtcctccagga	7	15	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60543033	C	C	60543033	1	2	16	0	1	0	0	0	0	0	0	0	9953	261	9	5		5	MS4A15	11	60543033	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	1062081	60543033	74463483	296	34389											
TMEM132A	54972	broad.mit.edu	37	chr11	60694569	60694569	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaagggacatttacagcCcttttctccctcccttgccc	9	15	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60694569	T	T	60694569	1	4	16	0	1	0	0	0	0	0	0	0	16168	638	22	4		4	TMEM132A	11	60694569	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	151536	60694569	74311947	297	34390											
B3GAT3	26229	broad.mit.edu	37	chr11	62384573	62384573	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagcaccccctctgccccgGagccagtccagggccttgtt	10	18	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62384573	T	T	62384573	2	4	16	1	0	0	0	0	0	0	0	1	1260	1161	41	3		3	B3GAT3	11	62384573	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	1690004	62384573	72621943	298	34391											
SNX15	29907	broad.mit.edu	37	chr11	64806226	64806226	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacccaggccctgcgggatGagaaggcaggcgcttacgct	14	13	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64806226	A	A	64806226	3	1	16	1	0	0	0	0	1	0	0	0	15000	1291	45	4	873	4	SNX15	11	64806226	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	2421653	64806226	70200290	299	34392											
MTL5	9633	broad.mit.edu	37	chr11	68514791	68514791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaaagttgcttcttccGgattattacttgtagtagta	8	7	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68514791	T	T	68514791	3	4	16	1	0	0	0	0	1	0	0	0	10030	1116	39	1	1047	1	MTL5	11	68514791	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3708565	68514791	66491725	300	34393											
FOLR3	2352	broad.mit.edu	37	chr11	71847143	71847143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaagacacagcccagcCccgaggacgagctgtatggc	11	15	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71847143	A	A	71847143	3	1	16	1	0	0	0	0	1	0	0	0	6041	623	22	2	147	2	FOLR3	11	71847143	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	3332352	71847143	63159373	301	34394											
PDE2A	5138	broad.mit.edu	37	chr11	72307602	72307602	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactccctcccatggtctccTctccctacatcccaccgcct	3	23	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72307602	A	A	72307602	1	1	16	0	1	0	0	0	0	0	0	0	11730	1566	54	5		5	PDE2A	11	72307602	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	460459	72307602	62698914	302	34395											
PPME1	51400	broad.mit.edu	37	chr11	73950231	73950231	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctatagtggaaggaatcaTagaggaagaagaagaagatg	13	2	2	5			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73950231	A	A	73950231	3	1	16	1	0	0	0	0	1	0	0	0	12448	1406	49	5	798	5	PPME1	11	73950231	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	1642629	73950231	61056285	303	34396											
CCDC83	220047	broad.mit.edu	37	chr11	85626593	85626594	+	Intron	DNP	CA	AG	AG													tttttcaaactcttgtttttCaatttaaaaaacacttacct							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	85626594	AG	AG	85626593	1	1	16	0	1	0	0	0	0	0	0	0	2885	841	29	3		3	CCDC83	11	85626593	Intron	DNP	CA	TCGA-05-4415-01A-22D-1855-08	11676362	85626593	49379923	304	34397											
ENDOD1	23052	broad.mit.edu	37	chr11	94861876	94861876	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactacagagttaaagacaaAgtggcagtccctgagtttgt	11	7	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94861876	T	T	94861876	3	4	16	1	0	0	0	0	1	0	0	0	5156	69	3	5	642	5	ENDOD1	11	94861876	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	9235283	94861876	40144640	305	34398											
PGR	5241	broad.mit.edu	37	chr11	100909790	100909790	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcaagacctcataatcctGaccaaaacaaaaagacatac	3	12	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100909790	T	T	100909790	1	4	16	0	1	0	0	0	0	0	0	0	11900	1305	45	3		3	PGR	11	100909790	3'UTR	SNP	G	TCGA-05-4415-01A-22D-1855-08	6047914	100909790	34096726	306	34399											
DYNC2H1	79659	broad.mit.edu	37	chr11	103091378	103091378	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatgaagctaaactagcAgttggaaacattaagcccga	9	8	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103091378	T	T	103091378	2	4	16	1	0	0	0	0	0	0	0	1	4886	175	7	5		5	DYNC2H1	11	103091378	Silent	SNP	A	TCGA-05-4415-01A-22D-1855-08	2181588	103091378	31915138	307	34400											
CASP5	838	broad.mit.edu	37	chr11	104879698	104879698	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttacgccttttttttttgCcactgtcttctatcagaaat	4	10	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104879698	T	T	104879698	3	4	16	1	0	0	0	0	1	0	0	0	2700	739	26	4	1319	4	CASP5	11	104879698	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1788320	104879698	30126818	308	34401											
BLID	414899	broad.mit.edu	37	chr11	121986432	121986432	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaagattgtaccttttaaGagaaagcactgtttccttag	8	8	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121986432	T	T	121986432	3	4	16	1	0	0	0	0	1	0	0	0	1449	942	33	3	131	3	BLID	11	121986432	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	17106734	121986432	13020084	309	34402											
C11orf63	79864	broad.mit.edu	37	chr11	122775270	122775270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagcagccacctagctgGgtaaaacaaacgcttccata	7	12	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122775270	T	T	122775270	1	4	16	0	1	0	0	0	0	0	0	0	1666	1247	43	2		2	C11orf63	11	122775270	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	788838	122775270	12231246	310	34403											
PKNOX2	63876	broad.mit.edu	37	chr11	125255416	125255416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcacggtctctgtgtgtGcgcatgtgtgagctcttgat	14	9	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125255416	T	T	125255416	1	4	16	0	1	0	0	0	0	0	0	0	12078	1334	46	3		3	PKNOX2	11	125255416	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2480146	125255416	9751100	311	34404											
FEZ1	9638	broad.mit.edu	37	chr11	125330618	125330618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctagaggggcattctGgcttgaattttgatcagtta	11	7	3	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125330618	T	T	125330618	1	4	16	0	1	0	0	0	0	0	0	0	5880	1363	47	2		2	FEZ1	11	125330618	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	75202	125330618	9675898	312	34405											
DCP1B	196513	broad.mit.edu	37	chr12	2064594	2064594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgacaagcagagaactccGtacctggttgggctgaggta	13	8	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2064594	T	T	2064594	1	4	16	0	1	0	0	0	0	0	0	0	4332	1160	40	3		3	DCP1B	12	2064594	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		2064594	131787301	313	34406											
CACNA1C	775	broad.mit.edu	37	chr12	2721098	2721098	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagagctgcctgttcaaaatCgccatgaacatcctcaacat	6	13	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2721098	A	A	2721098	2	1	16	1	0	0	0	0	0	0	0	1	2566	874	31	3		3	CACNA1C	12	2721098	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	656504	2721098	131130797	314	34407											
VWF	7450	broad.mit.edu	37	chr12	6085306	6085306	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcctcacagggcttctGggagcactgggccacgcgga	15	13	2	0	rs61751288		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6085306	A	A	6085306	4	1	16	1	0	0	0	0	0	1	0	0	17373	1357	47	4	1073	4	VWF	12	6085306	Nonsense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3364208	6085306	127766589	315	34408			1	30		5	5	214	G		5.658358e-12
VWF	7450	broad.mit.edu	37	chr12	6085325	6085325	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggagcactgggccacgcgGaggcccatcacggcatcctc	14	15	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6085325	A	A	6085325	2	1	16	1	0	0	0	0	0	0	0	1	17373	1161	41	4		4	VWF	12	6085325	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	19	6085325	127766570	316	34409			1	30		5	5	214	G		5.658358e-12
VWF	7450	broad.mit.edu	37	chr12	6085432	6085432	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggtggacacacacctgtaGacataagttttcgtgagtga	11	8	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6085432	A	A	6085432	1	1	16	0	1	0	0	0	0	0	0	0	17373	957	33	4		4	VWF	12	6085432	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	107	6085432	127766463	317	34410			1	30		5	5	214	G		5.658358e-12
VWF	7450	broad.mit.edu	37	chr12	6085501	6085501	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagttagcacctactacacaGaagccgctctaagtgctgag	10	11	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6085501	A	A	6085501	1	1	16	0	1	0	0	0	0	0	0	0	17373	957	33	4		4	VWF	12	6085501	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	69	6085501	127766394	318	34411			1	30		5	5	214	G		5.658358e-12
VWF	7450	broad.mit.edu	37	chr12	6085519	6085519	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaagccgctctaagtgctGagaatgtggcaataaataaa	10	7	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6085519	A	A	6085519	1	1	16	0	1	0	0	0	0	0	0	0	17373	1305	45	4		4	VWF	12	6085519	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	18	6085519	127766376	319	34412			1	30		5	5	214	G		5.658358e-12
SLC2A14	144195	broad.mit.edu	37	chr12	7984358	7984358	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattgataaattcctttatGatctgcaaaataaaaggtgg	7	4	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7984358	T	T	7984358	2	4	16	1	0	0	0	0	0	0	0	1	14657	1280	45	3		3	SLC2A14	12	7984358	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	1898839	7984358	125867537	320	34413											
A2ML1	144568	broad.mit.edu	37	chr12	9027480	9027480	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagagattctctggaagGggctcaagcagtagcttttc	12	8	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9027480	C	C	9027480	1	2	16	0	1	0	0	0	0	0	0	0	5	1247	43	4		4	A2ML1	12	9027480	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1043122	9027480	124824415	321	34414											
WBP11	51729	broad.mit.edu	37	chr12	14942151	14942151	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtaactcaaatatggtTtgactttaacctgaaatcag	6	6	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14942151	A	A	14942151	1	1	16	0	1	0	0	0	0	0	0	0	17385	1856	64	5		5	WBP11	12	14942151	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	5914671	14942151	118909744	322	34415											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	16	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	10456134	25398285	108453610	323	34416											
TMTC1	83857	broad.mit.edu	37	chr12	29908673	29908673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttggaaagggaaaagaGgtcataaaccaagcacactc	10	8	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29908673	T	T	29908673	3	4	16	1	0	0	0	0	1	0	0	0	16383	1000	35	2	2008	2	TMTC1	12	29908673	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	4510388	29908673	103943222	324	34417											
TMPRSS12	283471	broad.mit.edu	37	chr12	51237861	51237861	+	Intron	DEL	A	-	-													tatttttatgctcttaggggAtattttgaagtgatagagga							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51237861	-	-	51237861	6	5	16	0	1	1	0	1	0	0	0	0	16367	348	12	0		0	TMPRSS12	12	51237861	Intron	DEL	A	TCGA-05-4415-01A-22D-1855-08	21329188	51237861	82614034	325	34418											
KRT85	3891	broad.mit.edu	37	chr12	52756686	52756686	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcctctggatcatgcgGttcagctcgttgatctcctc	10	13	5	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52756686	A	A	52756686	2	1	16	1	0	0	0	0	0	0	0	1	8570	1252	44	4		4	KRT85	12	52756686	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	1518825	52756686	81095209	326	34419											
FAM119B	25895	broad.mit.edu	37	chr12	58174037	58174037	+	Splice_Site	DEL	G	-	-													ttcctccttcctctctctcaGggggggatgttaccatcact					rs143311691		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58174037	-	-	58174037	8	5	16	1	0	1	0	1	0	0	1	0	5460	1014	35	0	442	0	FAM119B	12	58174037	Splice_Site	DEL	G	TCGA-05-4415-01A-22D-1855-08	5417351	58174037	75677858	327	34420											
FAM19A2	338811	broad.mit.edu	37	chr12	62104242	62104242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacatttcataacatacCgataatcttaaaactaaaca	2	9	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62104242	A	A	62104242	1	1	16	0	1	0	0	0	0	0	0	0	5579	667	23	1		1	FAM19A2	12	62104242	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	3930205	62104242	71747653	328	34421											
GRIP1	23426	broad.mit.edu	37	chr12	66765685	66765685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatgattcaaactcatcGtgctccccgacatgattgtt	6	13	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66765685	T	T	66765685	3	4	16	1	0	0	0	0	1	0	0	0	6853	1145	40	3	597	3	GRIP1	12	66765685	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	4661443	66765685	67086210	329	34422											
IL22	50616	broad.mit.edu	37	chr12	68645275	68645275	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctattgcatgacttagcattGacagttatcagtcctacctt	6	10	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68645275	T	T	68645275	1	4	16	0	1	0	0	0	0	0	0	0	7742	1305	45	3		3	IL22	12	68645275	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1879590	68645275	65206620	330	34423											
NAV3	89795	broad.mit.edu	37	chr12	78574707	78574707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaggcagaaactggtaaCacagctaagcctactcggcc	10	11	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78574707	A	A	78574707	3	1	16	1	0	0	0	0	1	0	0	0	10279	477	17	3	5622	3	NAV3	12	78574707	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	9929432	78574707	55277188	331	34424											
NR1H4	9971	broad.mit.edu	37	chr12	100957284	100957284	+	3'UTR	DEL	G	-	-													gtgatggggattacaggggaGgggtctagctcctttttctc							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100957284	-	-	100957284	6	5	16	0	1	1	0	1	0	0	0	0	10714	1015	35	0		0	NR1H4	12	100957284	3'UTR	DEL	G	TCGA-05-4415-01A-22D-1855-08	22382577	100957284	32894611	332	34425											
STAB2	55576	broad.mit.edu	37	chr12	104030904	104030904	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagccatccctgaatgtgCagccttgctctgcccagaaa	9	14	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104030904	T	T	104030904	3	4	16	1	0	0	0	0	1	0	0	0	15356	710	25	4	625	4	STAB2	12	104030904	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	3073620	104030904	29820991	333	34426											
NUAK1	9891	broad.mit.edu	37	chr12	106477704	106477704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcccggtggaccacacCgttctgaaatgagaagacaa	10	11	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106477704	A	A	106477704	3	1	16	1	0	0	0	0	1	0	0	0	10807	652	23	1	1484	1	NUAK1	12	106477704	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2446800	106477704	27374191	334	34427											
SART3	9733	broad.mit.edu	37	chr12	108923815	108923815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgatcaaagggtaatggGtatcaagctggtaacggttc	13	6	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108923815	A	A	108923815	1	1	16	0	1	0	0	0	0	0	0	0	13959	1276	44	4		4	SART3	12	108923815	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2446111	108923815	24928080	335	34428											
TMEM116	89894	broad.mit.edu	37	chr12	112374751	112374751	+	Intron	DEL	C	-	-													gctaactcttgctcataaaaCcttgtctctcccccacagac							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112374751	-	-	112374751	6	5	16	0	1	1	0	1	0	0	0	0	16153	522	18	0		0	TMEM116	12	112374751	Intron	DEL	C	TCGA-05-4415-01A-22D-1855-08	3450936	112374751	21477144	336	34429											
TBX5	6910	broad.mit.edu	37	chr12	114837473	114837473	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagggagagaggggggcggGaattaatgccagtattttaa	18	3	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114837473	T	T	114837473	1	4	16	0	1	0	0	0	0	0	0	0	15783	1189	41	3		3	TBX5	12	114837473	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2462722	114837473	19014422	337	34430											
P2RX4	5025	broad.mit.edu	37	chr12	121670211	121670211	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgatccatcctccttccCctcaggtttgccaagtacta	5	17	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121670211	T	T	121670211	1	4	16	0	1	0	0	0	0	0	0	0	11436	638	22	4		4	P2RX4	12	121670211	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	6832738	121670211	12181684	338	34431											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123686676	123686676	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaataatacatccaaggTggagaaaacttcacagctaa	7	7	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123686676	A	A	123686676	1	1	16	0	1	0	0	0	0	0	0	0	9822	1711	59	5		5	MPHOSPH9	12	123686676	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	2016465	123686676	10165219	339	34432											
FLT3	2322	broad.mit.edu	37	chr13	28607904	28607904	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccaatccactccatttttAgccttgaaacatggcaaaca	4	14	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28607904	T	T	28607904	1	4	16	0	1	0	0	0	0	0	0	0	6000	435	15	5		5	FLT3	13	28607904	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08		28607904	86561974	340	34433											
RXFP2	122042	broad.mit.edu	37	chr13	32356668	32356668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacggtgaaaaagtcctgcCttagtttccactccaaaaga	7	12	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32356668	A	A	32356668	1	1	16	0	1	0	0	0	0	0	0	0	13871	696	24	2		2	RXFP2	13	32356668	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	3748764	32356668	82813210	341	34434											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37678663	37678663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttacataaaacttcaacaGgggtggacatcttcttctca	6	11	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37678663	T	T	37678663	3	4	16	1	0	0	0	0	1	0	0	0	3985	1000	35	2	286	2	CSNK1A1L	13	37678663	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5321995	37678663	77491215	342	34435											
FOXO1	2308	broad.mit.edu	37	chr13	41193967	41193967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagtcacacaaaccagtcGggtggcagctaactcaggca	11	11	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41193967	T	T	41193967	1	4	16	0	1	0	0	0	0	0	0	0	6083	1131	39	1		1	FOXO1	13	41193967	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3515304	41193967	73975911	343	34436											
ENOX1	55068	broad.mit.edu	37	chr13	43930154	43930154	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcctccagcttgcgccGgtgccgctcctcccgggcac	11	20	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43930154	T	T	43930154	2	4	16	1	0	0	0	0	0	0	0	1	5168	1115	39	1		1	ENOX1	13	43930154	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	2736187	43930154	71239724	344	34437											
RB1	5925	broad.mit.edu	37	chr13	49039189	49039189	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattctattatagtattctAtaactcggtcttcatgcaga	6	7	4	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49039189	G	G	49039189	3	3	16	1	0	0	0	0	1	0	0	0	13206	449	16	5	2353	5	RB1	13	49039189	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	5109035	49039189	66130689	345	34438											
SETDB2	83852	broad.mit.edu	37	chr13	50057120	50057120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtaacagctgaggaaccCagagtaaatctaaattatta	7	6	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50057120	A	A	50057120	1	1	16	0	1	0	0	0	0	0	0	0	14252	609	21	2		2	SETDB2	13	50057120	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1017931	50057120	65112758	346	34439											
KLHL1	57626	broad.mit.edu	37	chr13	70535680	70535680	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatcaatctattgatcaatCaattaatgcattttatttat	2	5	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70535680	A	A	70535680	1	1	16	0	1	0	0	0	0	0	0	0	8436	841	29	3		3	KLHL1	13	70535680	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	20478560	70535680	44634198	347	34440											
MYCBP2	23077	broad.mit.edu	37	chr13	77631213	77631213	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcactgtaagtggaataTgtgactacaatccagcttaa	8	8	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77631213	C	C	77631213	3	2	16	1	0	0	0	0	1	0	0	0	10112	1464	51	5	711	5	MYCBP2	13	77631213	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	7095533	77631213	37538665	348	34441											
PCCA	5095	broad.mit.edu	37	chr13	100913261	100913261	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttgttttttatattactAgatggaccatttgcaactta	6	5	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100913261	G	G	100913261	1	3	16	0	1	0	0	0	0	0	0	0	11598	435	15	5		5	PCCA	13	100913261	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	23282048	100913261	14256617	349	34442											
PCCA	5095	broad.mit.edu	37	chr13	100953993	100954003	+	Intron	DEL	AGAAAAAAATT	-	-													acgtaatccataattaaatcAgaaaaaaattagataatttt							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100954003	-	-	100953993	6	5	16	0	1	1	0	1	0	0	0	0	11598	203	7	0		0	PCCA	13	100953993	Intron	DEL	AGAAAAAAATT	TCGA-05-4415-01A-22D-1855-08	40732	100953993	14215885	350	34443											
NALCN	259232	broad.mit.edu	37	chr13	101735286	101735286	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgtccatcggacacatacAggcttgcccctcttctgccc	7	18	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101735286	T	T	101735286	1	4	16	0	1	0	0	0	0	0	0	0	10242	203	7	5		5	NALCN	13	101735286	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	781293	101735286	13434592	351	34444											
F7	2155	broad.mit.edu	37	chr13	113773023	113773023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgccccggctgatgaccCaggactgcctgcagcagtca	12	15	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113773023	A	A	113773023	3	1	16	1	0	0	0	0	1	0	0	0	5392	595	21	2	1136	2	F7	13	113773023	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	12037737	113773023	1396855	352	34445											
MMP14	4323	broad.mit.edu	37	chr14	23313757	23313757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtctttgggagtgaggcGggtctccctagaggagctga	16	7	2	3	rs17881877	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23313757	T	T	23313757	1	4	16	0	1	0	0	0	0	0	0	0	9746	1131	39	1		1	MMP14	14	23313757	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		23313757	84035783	353	34446											
ACIN1	22985	broad.mit.edu	37	chr14	23531439	23531439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactggggccatttgacccCgtgcagagctgtgcgggtgg	18	10	0	2	rs138390500	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23531439	A	A	23531439	3	1	16	1	0	0	0	0	1	0	0	0	142	652	23	1	830	1	ACIN1	14	23531439	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	217682	23531439	83818101	354	34447											
JPH4	84502	broad.mit.edu	37	chr14	24045665	24045665	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccactggccctggtaggtgCctgcgggcggcggaggggtg	21	11	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24045665	T	T	24045665	3	4	16	1	0	0	0	0	1	0	0	0	8033	753	26	4	1522	4	JPH4	14	24045665	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	514226	24045665	83303875	355	34448											
LTB4R	1241	broad.mit.edu	37	chr14	24785218	24785218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgctcactggcggtggccCgcccctttgtgtcccagaag	12	16	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24785218	A	A	24785218	3	1	16	1	0	0	0	0	1	0	0	0	9158	652	23	1	363	1	LTB4R	14	24785218	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	739553	24785218	82564322	356	34449											
EGLN3	112399	broad.mit.edu	37	chr14	34398197	34398197	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggtcaatcccccacatGcacaggacacacgtttaaag	9	12	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34398197	A	A	34398197	1	1	16	0	1	0	0	0	0	0	0	0	5010	1334	46	4		4	EGLN3	14	34398197	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	9612979	34398197	72951343	357	34450											
CLEC14A	161198	broad.mit.edu	37	chr14	38724679	38724679	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttagaggcggccccgggGcgcggcgcaggacacaagac	17	12	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38724679	A	A	38724679	2	1	16	1	0	0	0	0	0	0	0	1	3531	1190	42	4		4	CLEC14A	14	38724679	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	4326482	38724679	68624861	358	34451											
MIA2	117153	broad.mit.edu	37	chr14	39717248	39717248	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatactggatcaaaataaTgtaattgaaaatgaagaaac	7	4	1	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39717248	C	C	39717248	2	2	16	1	0	0	0	0	0	0	0	1	9657	1461	51	5		5	MIA2	14	39717248	Silent	SNP	T	TCGA-05-4415-01A-22D-1855-08	992569	39717248	67632292	359	34452											
TBPL2	387332	broad.mit.edu	37	chr14	55907125	55907125	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcctcacctgagcggcgcActggtccaggtagagctcca	12	15	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55907125	T	T	55907125	3	4	16	1	0	0	0	0	1	0	0	0	15768	159	6	5	1016	5	TBPL2	14	55907125	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	16189877	55907125	51442415	360	34453											
KIAA0586	9786	broad.mit.edu	37	chr14	58988558	58988558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggtggagtcggagcgGggtgcagatgactttgctga	19	5	0	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58988558	T	T	58988558	1	4	16	0	1	0	0	0	0	0	0	0	8256	1247	43	2		2	KIAA0586	14	58988558	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3081433	58988558	48360982	361	34454											
RTN1	6252	broad.mit.edu	37	chr14	60194494	60194494	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattaggcgagatgttttgtCgttgcttgagaaacacatat	10	6	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60194494	A	A	60194494	1	1	16	0	1	0	0	0	0	0	0	0	13836	899	31	3		3	RTN1	14	60194494	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1205936	60194494	47155046	362	34455											
SYT16	83851	broad.mit.edu	37	chr14	62547784	62547784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacgaacatacagagagGgcccaaccccgtcttcaggg	12	13	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62547784	T	T	62547784	3	4	16	1	0	0	0	0	1	0	0	0	15591	1232	43	2	1240	2	SYT16	14	62547784	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	2353290	62547784	44801756	363	34456											
SLC8A3	6547	broad.mit.edu	37	chr14	70530443	70530443	+	Intron	DEL	G	-	-													ggaaagggaaccagagaggtGgaagacaagaggaggaggag							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70530443	-	-	70530443	6	5	16	0	1	1	0	1	0	0	0	0	14822	1363	47	0		0	SLC8A3	14	70530443	Intron	DEL	G	TCGA-05-4415-01A-22D-1855-08	7982659	70530443	36819097	364	34457											
ADAM20	8748	broad.mit.edu	37	chr14	70990220	70990220	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggttccacagtcacattcctCcccttcttcaaccactagat	4	16	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70990220	A	A	70990220	4	1	16	1	0	0	0	0	0	1	0	0	242	864	30	3	929	3	ADAM20	14	70990220	Nonsense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	459777	70990220	36359320	365	34458											
C14orf115	55237	broad.mit.edu	37	chr14	74824273	74824273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcttccagccctggccCcactctcatcgccggccaag	8	20	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74824273	A	A	74824273	3	1	16	1	0	0	0	0	1	0	0	0	1753	623	22	2	789	2	C14orf115	14	74824273	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	3834053	74824273	32525267	366	34459											
TSHR	7253	broad.mit.edu	37	chr14	81448829	81448829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacctaggtctggggctgaGgaagaggaggaagagaatgt	17	4	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81448829	T	T	81448829	1	4	16	0	1	0	0	0	0	0	0	0	16747	1015	35	2		2	TSHR	14	81448829	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	6624556	81448829	25900711	367	34460											
EML5	161436	broad.mit.edu	37	chr14	89178849	89178849	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaataaatcagagtcttAatttaaaaagttatttcatt	3	3	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89178849	G	G	89178849	1	3	16	0	1	0	0	0	0	0	0	0	5142	377	13	5		5	EML5	14	89178849	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	7730020	89178849	18170691	368	34461											
KCNK13	56659	broad.mit.edu	37	chr14	90528604	90528604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaacgaggacaacgcgCgctttctgctgctggccgcg	13	14	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90528604	A	A	90528604	3	1	16	1	0	0	0	0	1	0	0	0	8131	768	27	3	57	3	KCNK13	14	90528604	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1349755	90528604	16820936	369	34462											
CALM1	801	broad.mit.edu	37	chr14	90870237	90870237	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgacttccccgaatttttGactatgatggctagaaaaat	7	7	0	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90870237	T	T	90870237	3	4	16	1	0	0	0	0	1	0	0	0	2610	1281	45	3	224	3	CALM1	14	90870237	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	341633	90870237	16479303	370	34463											
SERPINA4	5267	broad.mit.edu	37	chr14	95030231	95030231	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggccatgggctggaaacaCgcgtgggcagtgctctgttc	15	12	1	0	rs140563422	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95030231	G	G	95030231	3	3	16	1	0	0	0	0	1	0	0	0	14204	536	19	4	414	4	SERPINA4	14	95030231	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	4159994	95030231	12319309	371	34464											
HERC2	8924	broad.mit.edu	37	chr15	28475374	28475374	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggacatcataagccaaGttcatgaagcatcactgggg	10	10	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28475374	A	A	28475374	1	1	16	0	1	0	0	0	0	0	0	0	7125	1044	36	4		4	HERC2	15	28475374	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		28475374	74056018	372	34465											
FMN1	342184	broad.mit.edu	37	chr15	33091096	33091096	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataaacacgtagctgggtgTgatctccttctcaccagact	8	12	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33091096	A	A	33091096	3	1	16	1	0	0	0	0	1	0	0	0	6007	1696	59	5	232	5	FMN1	15	33091096	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	4615722	33091096	69440296	373	34466											
ACTC1	70	broad.mit.edu	37	chr15	35084559	35084559	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtaggcggattcagtgagAgaggaggaaagcagacccac	16	7	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35084559	T	T	35084559	1	4	16	0	1	0	0	0	0	0	0	0	195	319	11	5		5	ACTC1	15	35084559	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	1993463	35084559	67446833	374	34467											
PLCB2	5330	broad.mit.edu	37	chr15	40594168	40594168	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccactcactttgcctttgGggaggtggcaggcactgaga	13	10	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40594168	A	A	40594168	3	1	16	1	0	0	0	0	1	0	0	0	12123	1232	43	4	3089	4	PLCB2	15	40594168	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5509609	40594168	61937224	375	34468											
RTF1	23168	broad.mit.edu	37	chr15	41772384	41772384	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacttgcatttatgctcttAccattagctttcctcttcac	3	14	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41772384	T	T	41772384	1	4	16	0	1	0	0	0	0	0	0	0	13832	406	14	5		5	RTF1	15	41772384	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	1178216	41772384	60759008	376	34469											
GALK2	2585	broad.mit.edu	37	chr15	49470930	49470930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgaatgtacttgtatGcagttatcttggcttacctg	9	9	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49470930	T	T	49470930	1	4	16	0	1	0	0	0	0	0	0	0	6266	1334	46	3		3	GALK2	15	49470930	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	7698546	49470930	53060462	377	34470											
HDC	3067	broad.mit.edu	37	chr15	50557759	50557759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgcaggagtagcagcaGggaagagggccagggatgcc	17	9	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50557759	T	T	50557759	1	4	16	0	1	0	0	0	0	0	0	0	7082	1015	35	2		2	HDC	15	50557759	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1086829	50557759	51973633	378	34471											
UNC13C	440279	broad.mit.edu	37	chr15	54305977	54305977	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaattgagcagttgcgcAcagggtttgtccagtctcgg	14	8	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54305977	T	T	54305977	3	4	16	1	0	0	0	0	1	0	0	0	17112	159	6	5	879	5	UNC13C	15	54305977	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	3748218	54305977	48225415	379	34472											
CILP	8483	broad.mit.edu	37	chr15	65491382	65491382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattctgaaagcaatcatgGggcagccggataagatagct	12	8	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65491382	T	T	65491382	2	4	16	1	0	0	0	0	0	0	0	1	3460	1219	43	2		2	CILP	15	65491382	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	11185405	65491382	37040010	380	34473											
IGDCC4	57722	broad.mit.edu	37	chr15	65677097	65677098	+	Intron	DNP	CC	AA	AA													gaggaggggctgttttcaacCcaggttgaaacaggttcctg							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	65677098	AA	AA	65677097	1	1	16	0	1	0	0	0	0	0	0	0	7639	638	22	2		2	IGDCC4	15	65677097	Intron	DNP	CC	TCGA-05-4415-01A-22D-1855-08	185715	65677097	36854295	381	34474											
C15orf60	283677	broad.mit.edu	37	chr15	73766335	73766335	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctttacatgaatttttgtatCctcaagcttcttcagtctca	4	10	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73766335	G	G	73766335	1	3	16	0	1	0	0	0	0	0	0	0	1821	870	30	4		4	C15orf60	15	73766335	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	8089238	73766335	28765057	382	34475											
BNC1	646	broad.mit.edu	37	chr15	83926424	83926424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagaaggcaggctagcaaGgctctggtcagccttctcca	11	14	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83926424	T	T	83926424	3	4	16	1	0	0	0	0	1	0	0	0	1480	1000	35	2	233	2	BNC1	15	83926424	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	10160089	83926424	18604968	383	34476											
NTRK3	4916	broad.mit.edu	37	chr15	88474439	88474439	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggagctttctttaaccctGctggtggctcttggggctgg	14	9	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88474439	C	C	88474439	1	2	16	0	1	0	0	0	0	0	0	0	10803	1334	46	4		4	NTRK3	15	88474439	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	4548015	88474439	14056953	384	34477											
ADAMTS17	170691	broad.mit.edu	37	chr15	100537779	100537779	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgccgagcaggggctccaCgggcctgccacccacctgcc	13	19	0	0	rs151305163	byFrequency	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100537779	A	A	100537779	2	1	16	1	0	0	0	0	0	0	0	1	262	523	19	3		3	ADAMTS17	15	100537779	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	12063340	100537779	1993613	385	34478											
UBE2I	7329	broad.mit.edu	37	chr16	1364203	1364203	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcgtgcctgggctgggccGgtgggactcgcaggccggtt	19	12	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1364203	A	A	1364203	1	1	16	0	1	0	0	0	0	0	0	0	16985	1131	39	4		4	UBE2I	16	1364203	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		1364203	88990550	386	34479											
SEC14L5	9717	broad.mit.edu	37	chr16	5046831	5046831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggggataccgttctgtgGgctttttacttctttgtctc	10	9	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5046831	T	T	5046831	1	4	16	0	1	0	0	0	0	0	0	0	14098	1247	43	2		2	SEC14L5	16	5046831	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3682628	5046831	85307922	387	34480											
ERCC4	2072	broad.mit.edu	37	chr16	14038472	14038472	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttttgtttttgtttttctCttactgctatcatcatgtag	6	6	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14038472	G	G	14038472	1	3	16	0	1	0	0	0	0	0	0	0	5257	928	32	4		4	ERCC4	16	14038472	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	8991641	14038472	76316281	388	34481											
PLA2G10	8399	broad.mit.edu	37	chr16	14766619	14766619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccggtcctggaagaagtgGggaaactgagattagagcag	16	6	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14766619	T	T	14766619	1	4	16	0	1	0	0	0	0	0	0	0	12084	1247	43	2		2	PLA2G10	16	14766619	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	728147	14766619	75588134	389	34482											
XYLT1	64131	broad.mit.edu	37	chr16	17211799	17211799	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagacccccaaagttgCggaatagcctctccttggca	9	14	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17211799	T	T	17211799	3	4	16	1	0	0	0	0	1	0	0	0	17590	768	27	4	626	4	XYLT1	16	17211799	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2445180	17211799	73142954	390	34483											
ARL6IP1	23204	broad.mit.edu	37	chr16	18812850	18812850	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacgagtcctccaaccgaaAcccgcacaccaaccacaacc	4	20	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18812850	T	T	18812850	1	4	16	0	1	0	0	0	0	0	0	0	946	58	2	5		5	ARL6IP1	16	18812850	5'UTR	SNP	A	TCGA-05-4415-01A-22D-1855-08	1601051	18812850	71541903	391	34484											
GPR139	124274	broad.mit.edu	37	chr16	20043721	20043721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccgtgtggtacttgagcGggtggcagacagcgatatac	15	8	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043721	T	T	20043721	3	4	16	1	0	0	0	0	1	0	0	0	6713	1116	39	1	667	1	GPR139	16	20043721	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1230871	20043721	70311032	392	34485											
ARHGAP17	55114	broad.mit.edu	37	chr16	24942256	24942256	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaggttccagcatgtggCtgtgcagtttcagggttacc	14	8	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24942256	T	T	24942256	2	4	16	1	0	0	0	0	0	0	0	1	869	796	28	4		4	ARHGAP17	16	24942256	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	4898535	24942256	65412497	393	34486											
TAOK2	9344	broad.mit.edu	37	chr16	29998953	29998953	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaccccaaaaccaacaaGgatggcttccgcagccgcct	8	16	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29998953	A	A	29998953	2	1	16	1	0	0	0	0	0	0	0	1	15667	991	35	4		4	TAOK2	16	29998953	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	5056697	29998953	60355800	394	34487											
ITGAM	3684	broad.mit.edu	37	chr16	31284711	31284711	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgtttaacatcaccaacGgagcccgaaagaatgccttt	8	11	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31284711	A	A	31284711	3	1	16	1	0	0	0	0	1	0	0	0	7957	1117	39	4	760	4	ITGAM	16	31284711	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1285758	31284711	59070042	395	34488											
ITGAX	3687	broad.mit.edu	37	chr16	31388320	31388320	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctcagttccttttcctcaGatcaccttcttggctacctt	4	15	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31388320	T	T	31388320	5	4	16	1	0	0	0	0	0	0	1	0	7959	956	33	3	2711	3	ITGAX	16	31388320	Splice_Site	SNP	G	TCGA-05-4415-01A-22D-1855-08	103609	31388320	58966433	396	34489											
ABCC11	85320	broad.mit.edu	37	chr16	48210987	48210987	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacccctggggacaacttGtgccttccatgtgtaaagga	11	12	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48210987	A	A	48210987	3	1	16	1	0	0	0	0	1	0	0	0	51	1377	48	4	786	4	ABCC11	16	48210987	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	16822667	48210987	42143766	397	34490											
SALL1	6299	broad.mit.edu	37	chr16	51174869	51174869	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttttctttgctgggccaAggcagacaaggagtttaaat	11	7	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51174869	G	G	51174869	2	3	16	1	0	0	0	0	0	0	0	1	13921	69	3	5		5	SALL1	16	51174869	Silent	SNP	A	TCGA-05-4415-01A-22D-1855-08	2963882	51174869	39179884	398	34491											
CES7	221223	broad.mit.edu	37	chr16	55893613	55893613	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttttctgtaataaggaaGaaaaaaaaatcatcagctat	6	4	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55893613	A	A	55893613	1	1	16	0	1	0	0	0	0	0	0	0	3302	957	33	4		4	CES7	16	55893613	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	4718744	55893613	34461140	399	34492											
CDH16	1014	broad.mit.edu	37	chr16	66942271	66942271	+	3'UTR	DEL	C	-	-													atggagccagaggccaagctCccagctagagctgcctgggc							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66942271	-	-	66942271	6	5	16	0	1	1	0	1	0	0	0	0	3131	870	30	0		0	CDH16	16	66942271	3'UTR	DEL	C	TCGA-05-4415-01A-22D-1855-08	11048658	66942271	23412482	400	34493											
C16orf48	84080	broad.mit.edu	37	chr16	67698948	67698948	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtcgtacttgggtgagCgccacagagctttcaggggc	14	11	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67698948	T	T	67698948	3	4	16	1	0	0	0	0	1	0	0	0	1830	768	27	4	656	4	C16orf48	16	67698948	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	756677	67698948	22655805	401	34494											
DHX38	9785	broad.mit.edu	37	chr16	72141383	72141383	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccacttcatggacccgccCccggaggacaacatgctcaa	8	16	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72141383	T	T	72141383	2	4	16	1	0	0	0	0	0	0	0	1	4551	610	22	4		4	DHX38	16	72141383	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	4442435	72141383	18213370	402	34495											
CHST5	23563	broad.mit.edu	37	chr16	75563159	75563159	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccggtagcccagcagctgcAgcgcgccggcgcacacctcc	13	19	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75563159	G	G	75563159	3	3	16	1	0	0	0	0	1	0	0	0	3438	188	7	5	115	5	CHST5	16	75563159	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	3421776	75563159	14791594	403	34496											
WWOX	51741	broad.mit.edu	37	chr16	78142463	78142463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggcagagaggtgacagGttattgtgtgtttagggagg	17	4	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78142463	T	T	78142463	1	4	16	0	1	0	0	0	0	0	0	0	17541	1276	44	3		3	WWOX	16	78142463	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	2579304	78142463	12212290	404	34497											
PKD1L2	114780	broad.mit.edu	37	chr16	81228608	81228608	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggagaaggcattcctcacCagcatggtgaccagaaaggt	12	9	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81228608	A	A	81228608	2	1	16	1	0	0	0	0	0	0	0	1	12060	581	21	2		2	PKD1L2	16	81228608	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	3086145	81228608	9126145	405	34498											
PKD1L2	114780	broad.mit.edu	37	chr16	81240980	81240980	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagccgcccagctctccaaaGaaccgtaagaaatggtaact	8	12	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81240980	T	T	81240980	1	4	16	0	1	0	0	0	0	0	0	0	12060	957	33	3		3	PKD1L2	16	81240980	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	12372	81240980	9113773	406	34499											
PKD1L2	114780	broad.mit.edu	37	chr16	81253859	81253859	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtggcacaaattcataGcaagcatctctgaaggccac	9	12	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81253859	A	A	81253859	2	1	16	1	0	0	0	0	0	0	0	1	12060	963	34	4		4	PKD1L2	16	81253859	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	12879	81253859	9100894	407	34500											
LRRC50	123872	broad.mit.edu	37	chr16	84199428	84199428	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaggggagggtacgcagcTgaaaaggaggagagacagca	18	6	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84199428	A	A	84199428	2	1	16	1	0	0	0	0	0	0	0	1	9096	1567	55	5		5	LRRC50	16	84199428	Silent	SNP	T	TCGA-05-4415-01A-22D-1855-08	2945569	84199428	6155325	408	34501											
FOXF1	2294	broad.mit.edu	37	chr16	86545096	86545096	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccggcagcctctccacgcaCtccctggagcagccgtatct	9	18	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86545096	T	T	86545096	2	4	16	1	0	0	0	0	0	0	0	1	6065	564	20	4		4	FOXF1	16	86545096	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	2345668	86545096	3809657	409	34502											
SPG7	6687	broad.mit.edu	37	chr16	89592826	89592826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgagctgaatatcgaGgccaaggacaggatcccagt	13	8	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89592826	T	T	89592826	3	4	16	1	0	0	0	0	1	0	0	0	15162	991	35	2	726	2	SPG7	16	89592826	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	3047730	89592826	761927	410	34503											
PLD2	5338	broad.mit.edu	37	chr17	4713204	4713204	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggactccttcctgctgtAcatgtgcctcgagacaggtg	12	11	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4713204	G	G	4713204	3	3	16	1	0	0	0	0	1	0	0	0	12141	391	14	5	770	5	PLD2	17	4713204	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08		4713204	76482006	411	34504											
TP53	7157	broad.mit.edu	37	chr17	7579312	7579312	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccctcagggcaactgacCgtgcaagtcacagacttggc	11	14	2	2	rs55863639		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579312	A	A	7579312	2	1	16	1	0	0	0	0	0	0	0	1	16505	666	23	1		1	TP53	17	7579312	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	2866108	7579312	73615898	412	34505											
ARHGEF15	22899	broad.mit.edu	37	chr17	8215575	8215576	+	Frame_Shift_Ins	INS	-	T	T													gctgcatccctcaagcccccINStgctcttttgcccccctcag							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8215576	T	T	8215575	7	5	16	1	0	1	1	0	0	0	0	0	900	681	24	0	220	0	ARHGEF15	17	8215575	Frame_Shift_Ins	INS	-	TCGA-05-4415-01A-22D-1855-08	636263	8215575	72979635	413	34506											
MYH13	8735	broad.mit.edu	37	chr17	10258398	10258398	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttatagagtgtttggactCacaagtttcgatgtctgccg	10	7	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10258398	T	T	10258398	1	4	16	0	1	0	0	0	0	0	0	0	10126	841	29	4		4	MYH13	17	10258398	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	2042823	10258398	70936812	414	34507											
MYH4	4622	broad.mit.edu	37	chr17	10363568	10363568	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactcattgccgaccttgacTctgggatagcagagagattt	10	9	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10363568	A	A	10363568	3	1	16	1	0	0	0	0	1	0	0	0	10131	1548	54	5	4713	5	MYH4	17	10363568	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	105170	10363568	70831642	415	34508											
MYH1	4619	broad.mit.edu	37	chr17	10412764	10412764	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttcttttaaatactgtaCagcagtatgatctgtggtct	7	6	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10412764	T	T	10412764	1	4	16	0	1	0	0	0	0	0	0	0	10123	493	17	4		4	MYH1	17	10412764	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	49196	10412764	70782446	416	34509											
TOP2A	7153	broad.mit.edu	37	chr17	38560655	38560655	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatagaagggatagatctcTcgttatcagaatttgagaac	9	7	2	4			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38560655	A	A	38560655	3	1	16	1	0	0	0	0	1	0	0	0	16489	1551	54	5	2532	5	TOP2A	17	38560655	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	28147891	38560655	42634555	417	34510											
KRT24	192666	broad.mit.edu	37	chr17	38859882	38859882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaagctgcttccaccagCagacaccctggctgagctgc	11	15	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38859882	A	A	38859882	3	1	16	1	0	0	0	0	1	0	0	0	8532	710	25	3	1545	3	KRT24	17	38859882	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	299227	38859882	42335328	418	34511											
KRT17	3872	broad.mit.edu	37	chr17	39778674	39778674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctgcatctccaggtcgGctctggccagggtcagctca	11	14	5	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39778674	T	T	39778674	3	4	16	1	0	0	0	0	1	0	0	0	8525	1203	42	3	717	3	KRT17	17	39778674	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	918792	39778674	41416536	419	34512											
SLC4A1	6521	broad.mit.edu	37	chr17	42336745	42336745	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaagatcaggccaggccgAggagcccagggtgggtgtgc	19	9	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42336745	T	T	42336745	1	4	16	0	1	0	0	0	0	0	0	0	14764	319	11	5		5	SLC4A1	17	42336745	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	2558071	42336745	38858465	420	34513											
GNGT2	2793	broad.mit.edu	37	chr17	47284772	47284772	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacaggtccttctcgctgaGatcctgggccatcctgccct	9	16	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47284772	T	T	47284772	3	4	16	1	0	0	0	0	1	0	0	0	6598	942	33	3	204	3	GNGT2	17	47284772	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	4948027	47284772	33910438	421	34514											
XYLT2	64132	broad.mit.edu	37	chr17	48437660	48437660	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgactcaggtagcagggccCcagccagtacccgtggagga	15	13	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48437660	A	A	48437660	1	1	16	0	1	0	0	0	0	0	0	0	17591	638	22	2		2	XYLT2	17	48437660	3'UTR	SNP	C	TCGA-05-4415-01A-22D-1855-08	1152888	48437660	32757550	422	34515											
ACSF2	80221	broad.mit.edu	37	chr17	48552029	48552029	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagccaggcacatcaaatGtcaaggaattgactgaacga	10	9	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48552029	A	A	48552029	1	1	16	0	1	0	0	0	0	0	0	0	175	1392	48	4		4	ACSF2	17	48552029	3'UTR	SNP	G	TCGA-05-4415-01A-22D-1855-08	114369	48552029	32643181	423	34516											
EPX	8288	broad.mit.edu	37	chr17	56277675	56277675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtggatgagctccgggacCggctgtttcggcaagtgagg	17	8	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56277675	A	A	56277675	2	1	16	1	0	0	0	0	0	0	0	1	5242	643	23	1		1	EPX	17	56277675	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	7725646	56277675	24917535	424	34517											
USP32	84669	broad.mit.edu	37	chr17	58348624	58348624	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catatgagaagatggtttctTagagttaaaatgtattggtt	10	2	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58348624	G	G	58348624	1	3	16	0	1	0	0	0	0	0	0	0	17190	1769	61	5		5	USP32	17	58348624	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	2070949	58348624	22846586	425	34518											
TBX4	9496	broad.mit.edu	37	chr17	59560748	59560748	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcccccaagggtgtgagagGaagccaccctcgccacatct	10	16	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59560748	A	A	59560748	2	1	16	1	0	0	0	0	0	0	0	1	15782	1165	41	4		4	TBX4	17	59560748	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	1212124	59560748	21634462	426	34519											
BRIP1	83990	broad.mit.edu	37	chr17	59937249	59937249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacaaacaatgttgcttgCtgtttaatcctctgagaatc	6	10	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59937249	A	A	59937249	3	1	16	1	0	0	0	0	1	0	0	0	1523	797	28	3	3708	3	BRIP1	17	59937249	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	376501	59937249	21257961	427	34520											
MAP3K3	4215	broad.mit.edu	37	chr17	61767648	61767648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcccccatcaactggcGccggggaaagctcctgggcc	13	16	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61767648	T	T	61767648	3	4	16	1	0	0	0	0	1	0	0	0	9343	1087	38	3	1231	3	MAP3K3	17	61767648	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1830399	61767648	19427562	428	34521											
CD79B	974	broad.mit.edu	37	chr17	62008828	62008828	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccctgcatgccctctatgttCccggagctacttcctccttc	6	18	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62008828	G	G	62008828	1	3	16	0	1	0	0	0	0	0	0	0	3067	870	30	4		4	CD79B	17	62008828	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	241180	62008828	19186382	429	34522											
CCDC46	201134	broad.mit.edu	37	chr17	63822403	63822403	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagatggatggtctaaactCagagaagcccacatcttcgt	10	10	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63822403	A	A	63822403	1	1	16	0	1	0	0	0	0	0	0	0	2845	813	29	3		3	CCDC46	17	63822403	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1813575	63822403	17372807	430	34523											
ABCA10	10349	broad.mit.edu	37	chr17	67171024	67171024	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaaatagtatgttatagtGtctgtgtgacaaaaagcatc	9	4	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67171024	A	A	67171024	1	1	16	0	1	0	0	0	0	0	0	0	29	1392	48	4		4	ABCA10	17	67171024	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3348621	67171024	14024186	431	34524											
KIF19	124602	broad.mit.edu	37	chr17	72346802	72346802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtacagtgtgccctgccCccatggcctgaatgccctgt	11	15	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72346802	A	A	72346802	1	1	16	0	1	0	0	0	0	0	0	0	8352	638	22	2		2	KIF19	17	72346802	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	5175778	72346802	8848408	432	34525											
LLGL2	3993	broad.mit.edu	37	chr17	73566413	73566413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctagcagcactgacagcCtgccatccccccaaggtgca	9	17	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73566413	A	A	73566413	1	1	16	0	1	0	0	0	0	0	0	0	8908	696	24	2		2	LLGL2	17	73566413	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1219611	73566413	7628797	433	34526											
UBE2O	63893	broad.mit.edu	37	chr17	74392671	74392671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagccccctggacggcagCtgtggctgcctcttcactga	11	16	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74392671	A	A	74392671	3	1	16	1	0	0	0	0	1	0	0	0	16994	797	28	3	1551	3	UBE2O	17	74392671	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	826258	74392671	6802539	434	34527											
RPTOR	57521	broad.mit.edu	37	chr17	78681705	78681705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctctgcacgtccttacGtcgcaacgccaaggaggagc	12	13	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78681705	T	T	78681705	3	4	16	1	0	0	0	0	1	0	0	0	13776	1145	40	3	427	3	RPTOR	17	78681705	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	4289034	78681705	2513505	435	34528											
ROCK1	6093	broad.mit.edu	37	chr18	18629083	18629083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggactgttggcaaaagcCatgatgtccctttcttccca	8	12	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18629083	A	A	18629083	3	1	16	1	0	0	0	0	1	0	0	0	13628	594	21	2	3800	2	ROCK1	18	18629083	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08		18629083	59448165	436	34529											
SS18	6760	broad.mit.edu	37	chr18	23598156	23598156	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctactaaagccttttataaCtaaaccacaaaggctgctta	5	10	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23598156	A	A	23598156	1	1	16	0	1	0	0	0	0	0	0	0	15293	580	20	3		3	SS18	18	23598156	3'UTR	SNP	C	TCGA-05-4415-01A-22D-1855-08	4969073	23598156	54479092	437	34530											
DSC3	1825	broad.mit.edu	37	chr18	28598198	28598198	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagatttccacattgaatgCattttcctctacaaatgctt	4	9	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28598198	T	T	28598198	3	4	16	1	0	0	0	0	1	0	0	0	4807	710	25	4	1651	4	DSC3	18	28598198	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	5000042	28598198	49479050	438	34531											
TTR	7276	broad.mit.edu	37	chr18	29173105	29173105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaagtagattgaaaaacGtaggcagaggtcaagtatgc	11	5	1	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29173105	T	T	29173105	1	4	16	0	1	0	0	0	0	0	0	0	16864	1160	40	3		3	TTR	18	29173105	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	574907	29173105	48904143	439	34532											
INO80C	125476	broad.mit.edu	37	chr18	33048628	33048628	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggtagccggtgacgacgtCagagggcagcctccgaatgt	15	11	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33048628	A	A	33048628	3	1	16	1	0	0	0	0	1	0	0	0	7818	826	29	3	56	3	INO80C	18	33048628	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	3875523	33048628	45028620	440	34533											
PIK3C3	5289	broad.mit.edu	37	chr18	39593637	39593637	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttctcttttcctttcCttagatgtaccaaatgctag	5	9	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39593637	T	T	39593637	1	4	16	0	1	0	0	0	0	0	0	0	12007	696	24	4		4	PIK3C3	18	39593637	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	6545009	39593637	38483611	441	34534											
SETBP1	26040	broad.mit.edu	37	chr18	42618435	42618435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgactgaaagctttgggGttgttattttttagggatgc	13	3	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42618435	T	T	42618435	1	4	16	0	1	0	0	0	0	0	0	0	14242	1276	44	3		3	SETBP1	18	42618435	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3024798	42618435	35458813	442	34535											
TCF4	6925	broad.mit.edu	37	chr18	53303197	53303197	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtagacatcaagagaatGggcactgttcgaaaaggaat	11	6	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53303197	T	T	53303197	1	4	16	0	1	0	0	0	0	0	0	0	15817	1363	47	2		2	TCF4	18	53303197	5'Flank	SNP	G	TCGA-05-4415-01A-22D-1855-08	10684762	53303197	24774051	443	34536											
CD226	10666	broad.mit.edu	37	chr18	67614136	67614136	+	Frame_Shift_Del	DEL	C	-	-													accctctcagcatagggcttCcttatgaccatgccatgagt							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67614136	-	-	67614136	7	5	16	1	0	1	0	1	0	0	0	0	3016	854	30	0	814	0	CD226	18	67614136	Frame_Shift_Del	DEL	C	TCGA-05-4415-01A-22D-1855-08	14310939	67614136	10463112	444	34537											
BSG	682	broad.mit.edu	37	chr19	580858	580858	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcctagactgggggtcccgGacccagccctcaggactggg	16	14	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	580858	T	T	580858	1	4	16	0	1	0	0	0	0	0	0	0	1538	1189	41	3		3	BSG	19	580858	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08		580858	58548125	445	34538											
STK11	6794	broad.mit.edu	37	chr19	1220663	1220676	+	Frame_Shift_Del	DEL	CCTGGACACCTTCT	-	-													ccgcccgagattgccaacggCctggacaccttctccggctt							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1220676	-	-	1220663	7	5	16	1	0	1	0	1	0	0	0	0	15405	726	26	0	699	0	STK11	19	1220663	Frame_Shift_Del	DEL	CCTGGACACCTTCT	TCGA-05-4415-01A-22D-1855-08	639805	1220663	57908320	446	34539											
ZNF443	10224	broad.mit.edu	37	chr19	12542605	12542605	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatactcatgtggtttgtgCccagcaccaactctgatgta	9	10	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12542605	T	T	12542605	2	4	16	1	0	0	0	0	0	0	0	1	18043	726	26	4		4	ZNF443	19	12542605	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	11321942	12542605	46586378	447	34540											
EMR3	84658	broad.mit.edu	37	chr19	14736374	14736374	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagactcagattttgattttAcgatctctctaaaccacttt	4	10	3	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14736374	T	T	14736374	3	4	16	1	0	0	0	0	1	0	0	0	5148	391	14	5	116	5	EMR3	19	14736374	Missense_Mutation	SNP	A	TCGA-05-4415-01A-22D-1855-08	2193769	14736374	44392609	448	34541											
CYP4F22	126410	broad.mit.edu	37	chr19	15648322	15648322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtaacaggagaggtccCtaacctcagtcttctgggcc	11	12	3	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15648322	A	A	15648322	1	1	16	0	1	0	0	0	0	0	0	0	4222	696	24	2		2	CYP4F22	19	15648322	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	911948	15648322	43480661	449	34542											
IL12RB1	3594	broad.mit.edu	37	chr19	18174812	18174812	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtctctgtgggctgcaCgggatgctctgcagtgggag	18	8	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18174812	T	T	18174812	3	4	16	1	0	0	0	0	1	0	0	0	7696	536	19	4	516	4	IL12RB1	19	18174812	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	2526490	18174812	40954171	450	34543											
ZNF90	7643	broad.mit.edu	37	chr19	20235970	20235970	+	RNA	SNP	G	T	T													aggtgaacgggcagcccctgGagatgactgagccgcgcatg							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20235970	T	T	20235970	1	4	16	0	1	0	0	0	0	0	0	0	18328	1189	41	3		3	ZNF90	19	20235970	RNA	SNP	G	TCGA-05-4415-01A-22D-1855-08	2061158	20235970	38893013	451	34544	199	2									
ZNF90	7643	broad.mit.edu	37	chr19	20235972	20235972	+	RNA	SNP	G	T	T													gtgaacgggcagcccctggaGatgactgagccgcgcatgct							TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20235972	T	T	20235972	1	4	16	0	1	0	0	0	0	0	0	0	18328	957	33	3		3	ZNF90	19	20235972	RNA	SNP	G	TCGA-05-4415-01A-22D-1855-08	2	20235972	38893011	452	34545	199	2									
HPN	3249	broad.mit.edu	37	chr19	35551242	35551242	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgccccctgctgacccttGtcccacagactgtggccgca	10	19	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35551242	C	C	35551242	1	2	16	0	1	0	0	0	0	0	0	0	7403	1392	48	4		4	HPN	19	35551242	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	15315270	35551242	23577741	453	34546											
CD22	933	broad.mit.edu	37	chr19	35835907	35835907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctccatctcgaagcctcCagcctgtggagtccctgacc	9	16	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35835907	A	A	35835907	1	1	16	0	1	0	0	0	0	0	0	0	3015	609	21	2		2	CD22	19	35835907	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	284665	35835907	23293076	454	34547											
HAUS5	23354	broad.mit.edu	37	chr19	36109979	36109979	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctaggcccagggccttgtgGagggccagaggggaggcttg	20	9	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36109979	T	T	36109979	1	4	16	0	1	0	0	0	0	0	0	0	7035	1189	41	3		3	HAUS5	19	36109979	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	274072	36109979	23019004	455	34548											
ZNF569	148266	broad.mit.edu	37	chr19	37917438	37917438	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcattcactgattagcaagCacatgtctttaatatctacc	4	10	4	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37917438	T	T	37917438	1	4	16	0	1	0	0	0	0	0	0	0	18127	725	25	4		4	ZNF569	19	37917438	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	1807459	37917438	21211545	456	34549											
LTBP4	8425	broad.mit.edu	37	chr19	41112287	41112287	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcaagttcctgactccacGgtgacctccccaaccctggc	8	17	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41112287	A	A	41112287	1	1	16	0	1	0	0	0	0	0	0	0	9163	1131	39	4		4	LTBP4	19	41112287	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3194849	41112287	18016696	457	34550											
MEGF8	1954	broad.mit.edu	37	chr19	42858893	42858893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacgggggctaggggaagtGggacctcttagtcctgggct	18	8	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42858893	T	T	42858893	1	4	16	0	1	0	0	0	0	0	0	0	9556	1363	47	2		2	MEGF8	19	42858893	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1746606	42858893	16270090	458	34551											
PSG2	5670	broad.mit.edu	37	chr19	43579616	43579616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaatagaaagagggtcCtgttggtttcggacagctga	12	8	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43579616	A	A	43579616	3	1	16	1	0	0	0	0	1	0	0	0	12761	681	24	2	420	2	PSG2	19	43579616	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	720723	43579616	15549367	459	34552											
ZNF235	9310	broad.mit.edu	37	chr19	44791609	44791609	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaactgaattctttcccaCattcctcacatttaaatggt	3	12	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44791609	T	T	44791609	3	4	16	1	0	0	0	0	1	0	0	0	17914	478	17	4	241	4	ZNF235	19	44791609	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	1211993	44791609	14337374	460	34553											
MARK4	57787	broad.mit.edu	37	chr19	45762240	45762240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcatgctccatctccccCgcccagcatggcaccttggg	9	18	2	0	rs76754165	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45762240	A	A	45762240	1	1	16	0	1	0	0	0	0	0	0	0	9407	667	23	1		1	MARK4	19	45762240	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	970631	45762240	13366743	461	34554											
ELSPBP1	64100	broad.mit.edu	37	chr19	48517686	48517686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggtaatacgtatgcgtgCgtagaaaaggctctgggttt	13	6	1	1	rs138357579	by1000genomes	TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48517686	A	A	48517686	1	1	16	0	1	0	0	0	0	0	0	0	5125	783	27	3		3	ELSPBP1	19	48517686	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	2755446	48517686	10611297	462	34555											
ATF5	22809	broad.mit.edu	37	chr19	50434063	50434063	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtgccagctgctggtgCagcctctcctgttgccatca	10	16	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50434063	A	A	50434063	1	1	16	0	1	0	0	0	0	0	0	0	1087	725	25	3		3	ATF5	19	50434063	5'UTR	SNP	C	TCGA-05-4415-01A-22D-1855-08	1916377	50434063	8694920	463	34556											
MYH14	79784	broad.mit.edu	37	chr19	50735303	50735303	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtcgctgcgggtcctgGgattcagccacgaggaaatc	15	10	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50735303	T	T	50735303	4	4	16	1	0	0	0	0	0	1	0	0	10127	1233	43	2	1124	2	MYH14	19	50735303	Nonsense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	301240	50735303	8393680	464	34557											
POLD1	5424	broad.mit.edu	37	chr19	50916947	50916947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccccccgacaccagtaGttgacagaagggaccctgct	10	16	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50916947	T	T	50916947	1	4	16	0	1	0	0	0	0	0	0	0	12285	1044	36	3		3	POLD1	19	50916947	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	181644	50916947	8212036	465	34558											
IGLON5	402665	broad.mit.edu	37	chr19	51830589	51830589	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacctggggcgtccagcttCtaggtgatgggatctgtcca	14	10	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51830589	A	A	51830589	1	1	16	0	1	0	0	0	0	0	0	0	7665	928	32	3		3	IGLON5	19	51830589	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	913642	51830589	7298394	466	34559											
SIGLEC8	27181	broad.mit.edu	37	chr19	51957880	51957880	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagctctggcttcagggattCtgttcccggtctgccctgcc	11	15	4	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51957880	T	T	51957880	1	4	16	0	1	0	0	0	0	0	0	0	14427	928	32	4		4	SIGLEC8	19	51957880	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	127291	51957880	7171103	467	34560											
ZNF347	84671	broad.mit.edu	37	chr19	53645328	53645328	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaattatttgctttttgCccctgtgtgagtaataaaga	7	9	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53645328	T	T	53645328	2	4	16	1	0	0	0	0	0	0	0	1	17987	726	26	4		4	ZNF347	19	53645328	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	1687448	53645328	5483655	468	34561											
ZNF765	91661	broad.mit.edu	37	chr19	53905611	53905611	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctccgcctcccgggttcacGccattctcctacttcagcct	7	19	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53905611	C	C	53905611	1	2	16	0	1	0	0	0	0	0	0	0	18268	1102	38	4		4	ZNF765	19	53905611	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	260283	53905611	5223372	469	34562											
NDUFA3	4696	broad.mit.edu	37	chr19	54606218	54606218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtgcaggttccggtggcGcacggggctcgggtagttct	17	9	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54606218	T	T	54606218	1	4	16	0	1	0	0	0	0	0	0	0	10360	1102	38	3		3	NDUFA3	19	54606218	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	700607	54606218	4522765	470	34563											
LILRA4	23547	broad.mit.edu	37	chr19	54850356	54850356	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagagcaggcttgtgagaatGagggtcatggcatctcctcc	13	9	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54850356	T	T	54850356	2	4	16	1	0	0	0	0	0	0	0	1	8859	1277	45	3		3	LILRA4	19	54850356	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	244138	54850356	4278627	471	34564											
PEG3	5178	broad.mit.edu	37	chr19	57328066	57328066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccccaaagtggattttctGgtgctcaatcagggcagaac	10	10	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57328066	T	T	57328066	3	4	16	1	0	0	0	0	1	0	0	0	11814	1357	47	2	3026	2	PEG3	19	57328066	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	2477710	57328066	1800917	472	34565											
ZSCAN22	342945	broad.mit.edu	37	chr19	58849613	58849613	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacagtgtggttcggactGtttcaggatgggatccagga	16	6	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58849613	A	A	58849613	1	1	16	0	1	0	0	0	0	0	0	0	18363	1392	48	4		4	ZSCAN22	19	58849613	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1521547	58849613	279370	473	34566											
PCSK2	5126	broad.mit.edu	37	chr20	17462466	17462466	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaagtggcctttcatgacCactcacacgtggggggaaga	13	10	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17462466	A	A	17462466	2	1	16	1	0	0	0	0	0	0	0	1	11695	581	21	2		2	PCSK2	20	17462466	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08		17462466	45563054	474	34567											
ABHD12	26090	broad.mit.edu	37	chr20	25349309	25349309	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagcatgaaagttttctgcTgtctttggaatcttgtctgc	10	7	4	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25349309	A	A	25349309	1	1	16	0	1	0	0	0	0	0	0	0	76	1595	55	5		5	ABHD12	20	25349309	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	7886843	25349309	37676211	475	34568											
PREX1	57580	broad.mit.edu	37	chr20	47273634	47273634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgggagcagaaggactgGttgaggatggactccacctc	16	10	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47273634	T	T	47273634	3	4	16	1	0	0	0	0	1	0	0	0	12582	1252	44	3	3004	3	PREX1	20	47273634	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	21924325	47273634	15751886	476	34569											
ARFGEF2	10564	broad.mit.edu	37	chr20	47626850	47626850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccaacatccgctcaggttgGaagaacatctttgccgtgtt	10	11	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47626850	T	T	47626850	3	4	16	1	0	0	0	0	1	0	0	0	855	1183	41	3	3772	3	ARFGEF2	20	47626850	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	353216	47626850	15398670	477	34570											
PTGIS	5740	broad.mit.edu	37	chr20	48164608	48164608	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcactgtgaacagcagcCgctctcagtggtcagggcct	13	12	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48164608	G	G	48164608	1	3	16	0	1	0	0	0	0	0	0	0	12858	667	23	4		4	PTGIS	20	48164608	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	537758	48164608	14860912	478	34571											
C20orf166	128826	broad.mit.edu	37	chr20	61151344	61151344	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggggtggctggacacCaggcagcagtggcaggaagg	19	10	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61151344	T	T	61151344	1	4	16	0	1	0	0	0	0	0	0	0	2117	609	21	4		4	C20orf166	20	61151344	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	12986736	61151344	1874176	479	34572											
COL9A3	1299	broad.mit.edu	37	chr20	61468270	61468270	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaggggttgggggtcctttCtagctccagcattcatcacc	11	12	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61468270	G	G	61468270	1	3	16	0	1	0	0	0	0	0	0	0	3741	928	32	4		4	COL9A3	20	61468270	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	316926	61468270	1557250	480	34573											
COL9A3	1299	broad.mit.edu	37	chr20	61468487	61468487	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcctttggcacccgggtcCattggtcggcccggtccagc	13	15	0	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61468487	T	T	61468487	2	4	16	1	0	0	0	0	0	0	0	1	3741	581	21	4		4	COL9A3	20	61468487	Silent	SNP	C	TCGA-05-4415-01A-22D-1855-08	217	61468487	1557033	481	34574											
SRMS	6725	broad.mit.edu	37	chr20	62173737	62173737	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatcactgccctggggcttGagggttggacagcaggtgcg	16	10	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62173737	A	A	62173737	1	1	16	0	1	0	0	0	0	0	0	0	15270	1305	45	4		4	SRMS	20	62173737	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	705250	62173737	851783	482	34575											
USP25	29761	broad.mit.edu	37	chr21	17135200	17135200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgattttgggtttttcCtccctctagcaccagcagac	7	11	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17135200	A	A	17135200	1	1	16	0	1	0	0	0	0	0	0	0	17182	696	24	2		2	USP25	21	17135200	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08		17135200	30994695	483	34576											
USP16	10600	broad.mit.edu	37	chr21	30422410	30422410	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctgttatgcttctctttTaggctggttttaacctacgc	7	9	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30422410	C	C	30422410	1	2	16	0	1	0	0	0	0	0	0	0	17173	1769	61	5		5	USP16	21	30422410	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	13287210	30422410	17707485	484	34577											
PWP2	5822	broad.mit.edu	37	chr21	45534721	45534721	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtcacccccttgggcccTgcagcttcgttccgcaatgg	11	16	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45534721	A	A	45534721	1	1	16	0	1	0	0	0	0	0	0	0	12952	1595	55	5		5	PWP2	21	45534721	Intron	SNP	T	TCGA-05-4415-01A-22D-1855-08	15112311	45534721	2595174	485	34578											
GAB4	128954	broad.mit.edu	37	chr22	17473038	17473038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgctagtctggcccctcCgcaggataaaccagcgtttc	9	15	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17473038	A	A	17473038	3	1	16	1	0	0	0	0	1	0	0	0	6211	652	23	1	1557	1	GAB4	22	17473038	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08		17473038	33831528	486	34579											
LZTR1	8216	broad.mit.edu	37	chr22	21344036	21344036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacggggagccagggcgcaGgtggaggaggtgaggggcat	23	7	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21344036	T	T	21344036	1	4	16	0	1	0	0	0	0	0	0	0	9225	1015	35	2		2	LZTR1	22	21344036	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	3870998	21344036	29960530	487	34580											
SEZ6L	23544	broad.mit.edu	37	chr22	26688836	26688836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaagtgcccctttggctgGaccgaaaggagagtgcggtc	15	10	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26688836	T	T	26688836	3	4	16	1	0	0	0	0	1	0	0	0	14256	1174	41	3	565	3	SEZ6L	22	26688836	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	5344800	26688836	24615730	488	34581											
GAS2L1	10634	broad.mit.edu	37	chr22	29706371	29706371	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccctggaatggctgacAttaagccccaggaggaggac	13	11	0	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29706371	G	G	29706371	1	3	16	0	1	0	0	0	0	0	0	0	6308	232	8	5		5	GAS2L1	22	29706371	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	3017535	29706371	21598195	489	34582											
RNF185	91445	broad.mit.edu	37	chr22	31583195	31583195	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggacagcactttcgagTgcaacatctgcttggacaca	11	11	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31583195	A	A	31583195	3	1	16	1	0	0	0	0	1	0	0	0	13579	1696	59	5	117	5	RNF185	22	31583195	Missense_Mutation	SNP	T	TCGA-05-4415-01A-22D-1855-08	1876824	31583195	19721371	490	34583											
LIMK2	3985	broad.mit.edu	37	chr22	31673092	31673092	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgctggacaagatccgggCcatgcagaagctgagcacac	12	13	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31673092	G	G	31673092	1	3	16	0	1	0	0	0	0	0	0	0	8874	739	26	4		4	LIMK2	22	31673092	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	89897	31673092	19631474	491	34584											
DEPDC5	9681	broad.mit.edu	37	chr22	32205478	32205478	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaggtgtcagatgttagctCctgcctttctgtcagttaca	10	9	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32205478	T	T	32205478	1	4	16	0	1	0	0	0	0	0	0	0	4482	870	30	4		4	DEPDC5	22	32205478	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	532386	32205478	19099088	492	34585											
CSF2RB	1439	broad.mit.edu	37	chr22	37331635	37331635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggagcagctggccatgaGgtctctgatggctgtcacct	14	10	2	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37331635	T	T	37331635	1	4	16	0	1	0	0	0	0	0	0	0	3969	1015	35	2		2	CSF2RB	22	37331635	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	5126157	37331635	13972931	493	34586											
PICK1	9463	broad.mit.edu	37	chr22	38468665	38468665	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtgtgagggtggggagGggagagtgtggcatgcagag	24	3	0	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38468665	C	C	38468665	1	2	16	0	1	0	0	0	0	0	0	0	11976	1247	43	4		4	PICK1	22	38468665	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	1137030	38468665	12835901	494	34587											
C22orf9	23313	broad.mit.edu	37	chr22	45601990	45601990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgtagcctcaacctcctGggctcaaatgatcctctcac	6	16	3	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45601990	A	A	45601990	1	1	16	0	1	0	0	0	0	0	0	0	2173	1363	47	4		4	C22orf9	22	45601990	Intron	SNP	G	TCGA-05-4415-01A-22D-1855-08	7133325	45601990	5702576	495	34588											
CRLF2	64109	broad.mit.edu	37	chrX	1317371	1317371	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggcagtggctatgcctactCcagcctggtgacaaggctat	12	11	0	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1317371	A	A	1317371	1	1	16	0	1	0	0	0	0	0	0	0	3919	870	30	3		3	CRLF2	23	1317371	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08		1317371	153953189	496	34589											
CSF2RA	1438	broad.mit.edu	37	chrX	1424475	1424475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggtggggagtggggagCgtgggacacggcctctgggt	23	6	1	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1424475	A	A	1424475	1	1	16	0	1	0	0	0	0	0	0	0	3968	783	27	3		3	CSF2RA	23	1424475	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08	107104	1424475	153846085	497	34590											
MXRA5	25878	broad.mit.edu	37	chrX	3228508	3228508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagatcggtgccattgGgaaggacccacaccaggctg	13	12	1	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3228508	T	T	3228508	3	4	16	1	0	0	0	0	1	0	0	0	10097	1232	43	2	754	2	MXRA5	23	3228508	Missense_Mutation	SNP	G	TCGA-05-4415-01A-22D-1855-08	1804033	3228508	152042052	498	34591											
SCML2	10389	broad.mit.edu	37	chrX	18278317	18278317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcactattttacatggcCcagaagcgacatctttatat	5	10	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18278317	A	A	18278317	3	1	16	1	0	0	0	0	1	0	0	0	14023	623	22	2	1087	2	SCML2	23	18278317	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	15049809	18278317	136992243	499	34592											
MORF4L2	9643	broad.mit.edu	37	chrX	102931227	102931227	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggcttttctcatcaagGggcgtataggccaacattgc	11	10	2	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102931227	T	T	102931227	2	4	16	1	0	0	0	0	0	0	0	1	9801	1219	43	2		2	MORF4L2	23	102931227	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	84652910	102931227	52339333	500	34593											
COL4A5	1287	broad.mit.edu	37	chrX	107920682	107920682	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcctgacttttatgctActcttaacactatactgaaa	4	9	1	2			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107920682	G	G	107920682	1	3	16	0	1	0	0	0	0	0	0	0	3726	406	14	5		5	COL4A5	23	107920682	Intron	SNP	A	TCGA-05-4415-01A-22D-1855-08	4989455	107920682	47349878	501	34594											
CAPN6	827	broad.mit.edu	37	chrX	110496280	110496280	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattccaaaactcattcatGgaagtggagaaagagaagac	10	7	2	3			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110496280	T	T	110496280	2	4	16	1	0	0	0	0	0	0	0	1	2656	1335	47	2		2	CAPN6	23	110496280	Silent	SNP	G	TCGA-05-4415-01A-22D-1855-08	2575598	110496280	44774280	502	34595											
ENOX2	10495	broad.mit.edu	37	chrX	129837188	129837188	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatcagacataggtagtgtCattgcagtggaatccacgtt	12	7	2	1			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129837188	A	A	129837188	3	1	16	1	0	0	0	0	1	0	0	0	5169	826	29	3	1790	3	ENOX2	23	129837188	Missense_Mutation	SNP	C	TCGA-05-4415-01A-22D-1855-08	19340908	129837188	25433372	503	34596											
PCDH11Y	83259	broad.mit.edu	37	chrY	5205718	5205718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttggctcccttcactccCctctcctgctgctcctcagc	5	22	3	0			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5205718	A	A	5205718	1	1	16	0	1	0	0	0	0	0	0	0	11603	638	22	2		2	PCDH11Y	24	5205718	Intron	SNP	C	TCGA-05-4415-01A-22D-1855-08		5205718	54167848	504	34597											
NOC2L	26155	broad.mit.edu	37	chr1	888700	888700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacgtcactggtggccccCcagcctcctcagcagggatg	12	16	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	888700	A	A	888700	1	1	17	0	1	0	0	0	0	0	0	0	10608	638	22	2		2	NOC2L	1	888700	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08		888700	248361921	1	34598											
ATAD3C	219293	broad.mit.edu	37	chr1	1396323	1396323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccgccccaccagccccCgtccaggggccctcgctcag	10	22	1	0	rs113733923	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1396323	A	A	1396323	1	1	17	0	1	0	0	0	0	0	0	0	1079	667	23	1		1	ATAD3C	1	1396323	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	507623	1396323	247854298	2	34599											
LRRC47	57470	broad.mit.edu	37	chr1	3697774	3697774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaccagaagggagggccCgtcctttccagcactgggat	12	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3697774	A	A	3697774	3	1	17	1	0	0	0	0	1	0	0	0	9091	652	23	1	125	1	LRRC47	1	3697774	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2301451	3697774	245552847	3	34600											
DNAJC11	55735	broad.mit.edu	37	chr1	6712898	6712898	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacattcttacctctccccaTccctttgccgaagttactcg	5	16	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6712898	G	G	6712898	2	3	17	1	0	0	0	0	0	0	0	1	4670	1422	50	5		5	DNAJC11	1	6712898	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	3015124	6712898	242537723	4	34601											
PTCHD2	57540	broad.mit.edu	37	chr1	11561596	11561596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcggcctcactcggtggcCcaggcccttaccgggacact	12	18	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11561596	A	A	11561596	3	1	17	1	0	0	0	0	1	0	0	0	12839	623	22	2	549	2	PTCHD2	1	11561596	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4848698	11561596	237689025	5	34602											
C1orf187	374946	broad.mit.edu	37	chr1	11769501	11769501	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagagtccctgatcctgccCgtcacctccctgcggcccca	9	19	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11769501	G	G	11769501	2	3	17	1	0	0	0	0	0	0	0	1	2041	639	23	4		4	C1orf187	1	11769501	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	207905	11769501	237481120	6	34603											
MTHFR	4524	broad.mit.edu	37	chr1	11850985	11850985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacccccgcacacacgcaCacatgcacacacacacagag	5	19	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11850985	A	A	11850985	1	1	17	0	1	0	0	0	0	0	0	0	10025	493	17	3		3	MTHFR	1	11850985	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	81484	11850985	237399636	7	34604											
CROCC	9696	broad.mit.edu	37	chr1	17272844	17272844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actccctgtccaagctgagcGccctcaacgagagccttgct	9	16	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17272844	A	A	17272844	3	1	17	1	0	0	0	0	1	0	0	0	3925	1087	38	4	2289	4	CROCC	1	17272844	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5421859	17272844	231977777	8	34605											
HSPG2	3339	broad.mit.edu	37	chr1	22191744	22191744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagggtggagggtggggtGgggttagacacagcatggcc	21	6	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22191744	T	T	22191744	1	4	17	0	1	0	0	0	0	0	0	0	7500	1363	47	2		2	HSPG2	1	22191744	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	4918900	22191744	227058877	9	34606											
ASAP3	55616	broad.mit.edu	37	chr1	23762407	23762407	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaaaggcctccagtacCgacaggaggtccctgttgca	12	12	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23762407	A	A	23762407	2	1	17	1	0	0	0	0	0	0	0	1	1016	639	23	1		1	ASAP3	1	23762407	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1570663	23762407	225488214	10	34607											
AHDC1	27245	broad.mit.edu	37	chr1	27878283	27878283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactggtcgcaggttcaccCgcccgttgtcccagcagcgt	11	17	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27878283	A	A	27878283	3	1	17	1	0	0	0	0	1	0	0	0	412	652	23	1	4471	1	AHDC1	1	27878283	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4115876	27878283	221372338	11	34608											
EPB41	2035	broad.mit.edu	37	chr1	29342337	29342337	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataatgtgtatgatgagacAgtaattcttaccaccataag	7	6	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29342337	T	T	29342337	1	4	17	0	1	0	0	0	0	0	0	0	5193	203	7	5		5	EPB41	1	29342337	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	1464054	29342337	219908284	12	34609											
FABP3	2170	broad.mit.edu	37	chr1	31840268	31840268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttccatcaattagctccCgcacaagtgtggtctcttgc	8	12	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31840268	A	A	31840268	3	1	17	1	0	0	0	0	1	0	0	0	5404	652	23	1	89	1	FABP3	1	31840268	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2497931	31840268	217410353	13	34610											
CSMD2	114784	broad.mit.edu	37	chr1	34082549	34082549	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccatcgccgcactgttccGggcatgcaggagatgtgggc	14	12	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34082549	A	A	34082549	2	1	17	1	0	0	0	0	0	0	0	1	3979	1103	39	4		4	CSMD2	1	34082549	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	2242281	34082549	215168072	14	34611											
CLSPN	63967	broad.mit.edu	37	chr1	36216741	36216741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagttaccctcatcatgccCctaaaacctcttatacaatt	3	13	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36216741	A	A	36216741	1	1	17	0	1	0	0	0	0	0	0	0	3592	638	22	2		2	CLSPN	1	36216741	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2134192	36216741	213033880	15	34612											
HECTD3	79654	broad.mit.edu	37	chr1	45470021	45470021	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacagcctgtggtaccaccTtcagcagacctgcctgcata	9	15	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45470021	A	A	45470021	3	1	17	1	0	0	0	0	1	0	0	0	7108	1609	56	5	434	5	HECTD3	1	45470021	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	9253280	45470021	203780600	16	34613											
CYP4A22	284541	broad.mit.edu	37	chr1	47609613	47609613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctcttcctcttgtctccCagcctttcccaggcacagtg	7	16	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47609613	A	A	47609613	1	1	17	0	1	0	0	0	0	0	0	0	4217	609	21	2		2	CYP4A22	1	47609613	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2139592	47609613	201641008	17	34614											
AGBL4	84871	broad.mit.edu	37	chr1	49052780	49052780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtggtccaggagtccaCcgaggaagcgacggccagtt	15	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49052780	A	A	49052780	3	1	17	1	0	0	0	0	1	0	0	0	377	507	18	3	364	3	AGBL4	1	49052780	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1443167	49052780	200197841	18	34615											
LRRC7	57554	broad.mit.edu	37	chr1	70339351	70339351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcgctacctgctgatgGgggctgccttcttactgcct	13	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70339351	T	T	70339351	1	4	17	0	1	0	0	0	0	0	0	0	9107	1247	43	2		2	LRRC7	1	70339351	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	21286571	70339351	178911270	19	34616											
RABGGTB	5876	broad.mit.edu	37	chr1	76255263	76255263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttttatcttcagtatgtGtaaatactgtaaaatagcta	5	4	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76255263	T	T	76255263	1	4	17	0	1	0	0	0	0	0	0	0	13076	1392	48	3		3	RABGGTB	1	76255263	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5915912	76255263	172995358	20	34617											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77093237	77093237	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgggatgataaatgacaccTactgcaagtaagatcacaag	9	8	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77093237	G	G	77093237	3	3	17	1	0	0	0	0	1	0	0	0	15343	1522	53	5	752	5	ST6GALNAC3	1	77093237	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	837974	77093237	172157384	21	34618											
CLCA4	22802	broad.mit.edu	37	chr1	87045796	87045796	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcaacccacatatttaTtgccattaaaagtatagata	4	7	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87045796	A	A	87045796	3	1	17	1	0	0	0	0	1	0	0	0	3490	1493	52	5	2582	5	CLCA4	1	87045796	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	9952559	87045796	162204825	22	34619											
CCBL2	56267	broad.mit.edu	37	chr1	89434336	89434336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagctcatggcccatatGgtcttgatatacttacaaag	7	8	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89434336	T	T	89434336	1	4	17	0	1	0	0	0	0	0	0	0	2759	1363	47	2		2	CCBL2	1	89434336	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2388540	89434336	159816285	23	34620											
DNTTIP2	30836	broad.mit.edu	37	chr1	94335424	94335424	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcttaattgcgaaatttctTcttctttcggaacttttttc	4	8	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94335424	C	C	94335424	3	2	17	1	0	0	0	0	1	0	0	0	4722	1792	62	5	20	5	DNTTIP2	1	94335424	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	4901088	94335424	154915197	24	34621											
ABCA4	24	broad.mit.edu	37	chr1	94506750	94506750	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaggccagggtccttcccTgggcagacacctacctcact	9	18	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94506750	A	A	94506750	1	1	17	0	1	0	0	0	0	0	0	0	34	1595	55	5		5	ABCA4	1	94506750	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	171326	94506750	154743871	25	34622											
LPPR4	9890	broad.mit.edu	37	chr1	99753744	99753744	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattgtgtttatctgtcctgGaaaactaaaaatcaccacat	5	8	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99753744	T	T	99753744	1	4	17	0	1	0	0	0	0	0	0	0	9014	1189	41	3		3	LPPR4	1	99753744	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5246994	99753744	149496877	26	34623											
NTNG1	22854	broad.mit.edu	37	chr1	107867647	107867647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcaatttctactgcaaCgttttcttcaggaactccac	5	11	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107867647	A	A	107867647	1	1	17	0	1	0	0	0	0	0	0	0	10799	551	19	3		3	NTNG1	1	107867647	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	8113903	107867647	141382974	27	34624											
PPIAL4G	644591	broad.mit.edu	37	chr1	143767569	143767569	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggacaagatgccagaacCtgtatgctttcggatgaggt	12	8	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143767569	T	T	143767569	3	4	17	1	0	0	0	0	1	0	0	0	12419	681	24	4	218	4	PPIAL4G	1	143767569	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	35899922	143767569	105483052	28	34625											
PDE4DIP	9659	broad.mit.edu	37	chr1	144866024	144866024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaacccagcagaaaaccCcaaggactgaaggcctggcc	9	17	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144866024	A	A	144866024	1	1	17	0	1	0	0	0	0	0	0	0	11737	638	22	2		2	PDE4DIP	1	144866024	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1098455	144866024	104384597	29	34626											
PDE4DIP	9659	broad.mit.edu	37	chr1	144882848	144882848	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatctgctctttcagctcCgcattctcaaggcaaaggct	7	15	4	0	rs146547581	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144882848	A	A	144882848	2	1	17	1	0	0	0	0	0	0	0	1	11737	639	23	1		1	PDE4DIP	1	144882848	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	16824	144882848	104367773	30	34627											
NBPF10	100132406	broad.mit.edu	37	chr1	145302524	145302524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttggccacagacattcCtttccacatgtgctgacctt	7	13	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145302524	T	T	145302524	1	4	17	0	1	0	0	0	0	0	0	0	10287	696	24	4		4	NBPF10	1	145302524	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	419676	145302524	103948097	31	34628											
OTUD7B	56957	broad.mit.edu	37	chr1	149916813	149916813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttcttgtccttctccCgatctcgctttgacttctcc	4	17	5	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149916813	A	A	149916813	3	1	17	1	0	0	0	0	1	0	0	0	11413	652	23	1	1060	1	OTUD7B	1	149916813	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4614289	149916813	99333808	32	34629											
HRNR	388697	broad.mit.edu	37	chr1	152187553	152187553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggacccatgtcggccgcgGctaggggaatggccagatcc	15	14	0	1	rs138998590	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152187553	T	T	152187553	3	4	17	1	0	0	0	0	1	0	0	0	7426	1194	42	3	2004	3	HRNR	1	152187553	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2270740	152187553	97063068	33	34630											
HRNR	388697	broad.mit.edu	37	chr1	152192644	152192644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtccgtggccggaggaGtgacctgagccagatccatg	15	10	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152192644	T	T	152192644	3	4	17	1	0	0	0	0	1	0	0	0	7426	1020	36	3	7095	3	HRNR	1	152192644	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5091	152192644	97057977	34	34631											
NPR1	4881	broad.mit.edu	37	chr1	153665758	153665759	+	Intron	DNP	CC	AA	AA													cagccaatgccactcccatcCctaaggctctcatctgactg							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	153665759	AA	AA	153665758	1	1	17	0	1	0	0	0	0	0	0	0	10689	638	22	2		2	NPR1	1	153665758	Intron	DNP	CC	TCGA-05-4417-01A-22D-1855-08	1473114	153665758	95584863	35	34632											
INTS3	65123	broad.mit.edu	37	chr1	153724780	153724780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgtctgatgattggtcGggatctcgtaagactacttc	12	7	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153724780	T	T	153724780	3	4	17	1	0	0	0	0	1	0	0	0	7849	1116	39	1	785	1	INTS3	1	153724780	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	59022	153724780	95525841	36	34633											
TPM3	7170	broad.mit.edu	37	chr1	154144374	154144374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtaagtggaaaagaatGgagcattccatgaagagatg	12	5	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154144374	T	T	154144374	1	4	17	0	1	0	0	0	0	0	0	0	16531	1363	47	2		2	TPM3	1	154144374	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	419594	154144374	95106247	37	34634											
UBAP2L	9898	broad.mit.edu	37	chr1	154208958	154208958	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgctgggattaccaccggGagccactgtgcctgcctggc	14	13	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154208958	T	T	154208958	1	4	17	0	1	0	0	0	0	0	0	0	16964	1189	41	3		3	UBAP2L	1	154208958	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	64584	154208958	95041663	38	34635											
HAX1	10456	broad.mit.edu	37	chr1	154246148	154246149	+	Intron	INS	-	T	T													aataaagagcctgcagggagINStagctgggggatgggaagtg							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154246149	T	T	154246148	6	5	17	0	1	1	1	0	0	0	0	0	7041	1044	36	0		0	HAX1	1	154246148	Intron	INS	-	TCGA-05-4417-01A-22D-1855-08	37190	154246148	95004473	39	34636											
ASH1L	55870	broad.mit.edu	37	chr1	155327141	155327141	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattggcttcatctgtaattGgggggtcaatctagttgggg	14	6	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155327141	C	C	155327141	3	2	17	1	0	0	0	0	1	0	0	0	1045	1357	47	4	1929	4	ASH1L	1	155327141	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1080993	155327141	93923480	40	34637											
C1orf182	128229	broad.mit.edu	37	chr1	156314480	156314480	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccacttttctgaacatccaGacaacaaagctgccctcggg	8	14	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156314480	T	T	156314480	3	4	17	1	0	0	0	0	1	0	0	0	2038	933	33	3	150	3	C1orf182	1	156314480	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	987339	156314480	92936141	41	34638											
MEF2D	4209	broad.mit.edu	37	chr1	156437512	156437512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctttgggtatgcacccCccactcccctctccccatag	7	19	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156437512	A	A	156437512	1	1	17	0	1	0	0	0	0	0	0	0	9551	638	22	2		2	MEF2D	1	156437512	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	123032	156437512	92813109	42	34639											
CD1A	909	broad.mit.edu	37	chr1	158226720	158226720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagggcactcagcgagGggacatcttgcccagtgctg	15	12	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158226720	T	T	158226720	3	4	17	1	0	0	0	0	1	0	0	0	3004	1232	43	2	763	2	CD1A	1	158226720	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1789208	158226720	91023901	43	34640											
CD1E	913	broad.mit.edu	37	chr1	158324199	158324199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaatcctatcatctagcaGcagaggagcagctgtccttc	8	12	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158324199	T	T	158324199	3	4	17	1	0	0	0	0	1	0	0	0	3008	971	34	3	97	3	CD1E	1	158324199	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	97479	158324199	90926422	44	34641			1	31		3	3	304	N	G_C	4.060585e-05
CD1E	913	broad.mit.edu	37	chr1	158324240	158324240	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatgctccaaacttcctcCtttgccaaccacagctgggc	7	17	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158324240	A	A	158324240	2	1	17	1	0	0	0	0	0	0	0	1	3008	668	24	2		2	CD1E	1	158324240	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	41	158324240	90926381	45	34642			1	31		3	3	304	N	G_C	4.060585e-05
CD1E	913	broad.mit.edu	37	chr1	158324502	158324502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgataatttgcctgggaaCaccaactattttccaaagtg	8	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158324502	A	A	158324502	1	1	17	0	1	0	0	0	0	0	0	0	3008	493	17	3		3	CD1E	1	158324502	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	262	158324502	90926119	46	34643			1	31		3	3	304	N	G_C	4.060585e-05
OR10X1	128367	broad.mit.edu	37	chr1	158548798	158548798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaatatgatggggctgaGgaagggggtaatgacagtat	17	3	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158548798	T	T	158548798	3	4	17	1	0	0	0	0	1	0	0	0	11016	1000	35	2	83	2	OR10X1	1	158548798	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	224296	158548798	90701823	47	34644											
SPTA1	6708	broad.mit.edu	37	chr1	158582642	158582642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtaatatatgacttgcCctctgccagggcttggaagg	12	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158582642	A	A	158582642	3	1	17	1	0	0	0	0	1	0	0	0	15234	623	22	2	168	2	SPTA1	1	158582642	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	33844	158582642	90667979	48	34645											
SPTA1	6708	broad.mit.edu	37	chr1	158621055	158621055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctgttaccttctgcatGttctagtgggtctgcagaat	10	9	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158621055	T	T	158621055	1	4	17	0	1	0	0	0	0	0	0	0	15234	1392	48	3		3	SPTA1	1	158621055	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	38413	158621055	90629566	49	34646											
SPTA1	6708	broad.mit.edu	37	chr1	158627430	158627430	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgagcacggagagactccAtattctggttcaaactcttg	9	11	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158627430	G	G	158627430	3	3	17	1	0	0	0	0	1	0	0	0	15234	217	8	5	4753	5	SPTA1	1	158627430	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	6375	158627430	90623191	50	34647											
APCS	325	broad.mit.edu	37	chr1	159558144	159558144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccaaagttatcgaaaaGttcccggctccagtgcacat	7	12	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159558144	T	T	159558144	3	4	17	1	0	0	0	0	1	0	0	0	769	1020	36	3	324	3	APCS	1	159558144	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	930714	159558144	89692477	51	34648											
ATP1A4	480	broad.mit.edu	37	chr1	160141497	160141497	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccatgattgaccctcccCgagctgcagtgcctgatgct	9	14	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160141497	A	A	160141497	2	1	17	1	0	0	0	0	0	0	0	1	1135	644	23	1		1	ATP1A4	1	160141497	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	583353	160141497	89109124	52	34649											
ATP1A4	480	broad.mit.edu	37	chr1	160156112	160156112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacagtattctcatcttcGtctatgatgaaatcagaaaa	5	9	4	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160156112	T	T	160156112	3	4	17	1	0	0	0	0	1	0	0	0	1135	1145	40	3	3098	3	ATP1A4	1	160156112	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	14615	160156112	89094509	53	34650											
FCGR2A	2212	broad.mit.edu	37	chr1	161476118	161476118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacccctttccactctgccCctcagcagctcccccaaagg	5	21	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161476118	A	A	161476118	1	1	17	0	1	0	0	0	0	0	0	0	5838	638	22	2		2	FCGR2A	1	161476118	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1320006	161476118	87774503	54	34651											
PBX1	5087	broad.mit.edu	37	chr1	164769160	164769160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgtcctgccctctctGggagtccctgatctggggct	15	13	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164769160	T	T	164769160	1	4	17	0	1	0	0	0	0	0	0	0	11586	1363	47	2		2	PBX1	1	164769160	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3293042	164769160	84481461	55	34652											
ALDH9A1	223	broad.mit.edu	37	chr1	165649772	165649772	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagactttggccacatcGggatgctgacacagaaactg	12	9	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165649772	T	T	165649772	2	4	17	1	0	0	0	0	0	0	0	1	506	1103	39	1		1	ALDH9A1	1	165649772	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	880612	165649772	83600849	56	34653											
DUSP27	92235	broad.mit.edu	37	chr1	167064042	167064042	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctcaggaacctaattcccTaactgcctttttcttgccaa	4	14	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167064042	A	A	167064042	1	1	17	0	1	0	0	0	0	0	0	0	4864	1537	53	5		5	DUSP27	1	167064042	5'Flank	SNP	T	TCGA-05-4417-01A-22D-1855-08	1414270	167064042	82186579	57	34654											
RCSD1	92241	broad.mit.edu	37	chr1	167666237	167666237	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acggtccttgcgtggacttgTgaagcagtgcaccagactga	13	10	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167666237	G	G	167666237	1	3	17	0	1	0	0	0	0	0	0	0	13293	1711	59	5		5	RCSD1	1	167666237	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	602195	167666237	81584384	58	34655											
BLZF1	8548	broad.mit.edu	37	chr1	169346053	169346053	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaatacaaaggttaagtctCtgggacatcataaaggagaa	9	5	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169346053	T	T	169346053	2	4	17	1	0	0	0	0	0	0	0	1	1459	912	32	4		4	BLZF1	1	169346053	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1679816	169346053	79904568	59	34656											
METTL13	51603	broad.mit.edu	37	chr1	171753006	171753006	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggaatgtaatgccaccCgacggccccagatgagcttc	11	12	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171753006	A	A	171753006	2	1	17	1	0	0	0	0	0	0	0	1	9590	644	23	1		1	METTL13	1	171753006	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	2406953	171753006	77497615	60	34657											
SLC9A11	284525	broad.mit.edu	37	chr1	173486700	173486700	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactagtttcacagatgacGgtatattcaatttcacgctt	6	8	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173486700	T	T	173486700	2	4	17	1	0	0	0	0	0	0	0	1	14825	1103	39	1		1	SLC9A11	1	173486700	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1733694	173486700	75763921	61	34658											
TNN	63923	broad.mit.edu	37	chr1	175086266	175086266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacgggcctgaggccgggtGtggagtacacggtgcacgtg	19	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175086266	T	T	175086266	3	4	17	1	0	0	0	0	1	0	0	0	16446	1377	48	3	2345	3	TNN	1	175086266	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1599566	175086266	74164355	62	34659											
PAPPA2	60676	broad.mit.edu	37	chr1	176811562	176811562	+	Frame_Shift_Del	DEL	G	-	-													cctggatgagtgcacctgccGggaccccaaggcagaagaaa							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176811562	-	-	176811562	7	5	17	1	0	1	0	1	0	0	0	0	11527	1116	39	0	5487	0	PAPPA2	1	176811562	Frame_Shift_Del	DEL	G	TCGA-05-4417-01A-22D-1855-08	1725296	176811562	72439059	63	34660											
RNASEL	6041	broad.mit.edu	37	chr1	182554734	182554734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcagacaagagacttccCgctgtgcacgtgggctgccc	12	13	0	2	rs141194514		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182554734	A	A	182554734	3	1	17	1	0	0	0	0	1	0	0	0	13527	652	23	1	1041	1	RNASEL	1	182554734	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	5743172	182554734	66695887	64	34661											
RGS8	85397	broad.mit.edu	37	chr1	182617465	182617465	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtgggaggaagaaaagaaGagagataggaagcagcttaa	15	2	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182617465	A	A	182617465	1	1	17	0	1	0	0	0	0	0	0	0	13421	957	33	4		4	RGS8	1	182617465	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	62731	182617465	66633156	65	34662											
SMG7	9887	broad.mit.edu	37	chr1	183511264	183511264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtttatcacagaaatccCagaattaatactggaagacc	7	8	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183511264	A	A	183511264	3	1	17	1	0	0	0	0	1	0	0	0	14912	594	21	2	1523	2	SMG7	1	183511264	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	893799	183511264	65739357	66	34663											
RGS18	64407	broad.mit.edu	37	chr1	192153501	192153501	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accctccacagttttgatgcTgcacaaagcagagtgtatca	8	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192153501	A	A	192153501	2	1	17	1	0	0	0	0	0	0	0	1	13409	1567	55	5		5	RGS18	1	192153501	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	8642237	192153501	57097120	67	34664											
KCNT2	343450	broad.mit.edu	37	chr1	196197285	196197285	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatttccatctagtttctttCgtgccagcaaaacttttgtg	6	9	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196197285	A	A	196197285	1	1	17	0	1	0	0	0	0	0	0	0	8162	899	31	3		3	KCNT2	1	196197285	3'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	4043784	196197285	53053336	68	34665											
KCNT2	343450	broad.mit.edu	37	chr1	196448282	196448282	+	Intron	DEL	G	-	-													tacagatgtgttctatcagcGggaaactgctaattaaaata							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196448282	-	-	196448282	6	5	17	0	1	1	0	1	0	0	0	0	8162	1131	39	0		0	KCNT2	1	196448282	Intron	DEL	G	TCGA-05-4417-01A-22D-1855-08	250997	196448282	52802339	69	34666											
ASPM	259266	broad.mit.edu	37	chr1	197073015	197073015	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgattgacctgtgctTtgtatgcatgatagtaattc	8	8	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197073015	G	G	197073015	3	3	17	1	0	0	0	0	1	0	0	0	1060	1841	64	5	5111	5	ASPM	1	197073015	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	624733	197073015	52177606	70	34667											
TNNI1	7135	broad.mit.edu	37	chr1	201382239	201382239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccttggcgtgcagctccCggcacaggtcctgggggccg	15	16	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201382239	A	A	201382239	3	1	17	1	0	0	0	0	1	0	0	0	16449	652	23	1	375	1	TNNI1	1	201382239	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4309224	201382239	47868382	71	34668											
NAV1	89796	broad.mit.edu	37	chr1	201754446	201754446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatctccacagtaatcagcGggatcggaacactcttccca	7	13	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201754446	T	T	201754446	3	4	17	1	0	0	0	0	1	0	0	0	10277	1116	39	1	2900	1	NAV1	1	201754446	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	372207	201754446	47496175	72	34669											
LGR6	59352	broad.mit.edu	37	chr1	202287186	202287186	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggactggtgctgctgacCgtgttcgctggcgggcctgt	16	10	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202287186	A	A	202287186	2	1	17	1	0	0	0	0	0	0	0	1	8830	639	23	1		1	LGR6	1	202287186	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	532740	202287186	46963435	73	34670											
CR1	1378	broad.mit.edu	37	chr1	207737306	207737306	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttctacagctgtgagccCggctatgacctcagaggggc	14	11	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207737306	A	A	207737306	2	1	17	1	0	0	0	0	0	0	0	1	3872	639	23	1		1	CR1	1	207737306	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	5450120	207737306	41513315	74	34671											
CD34	947	broad.mit.edu	37	chr1	208061527	208061527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcggcagccagctccCgcaggaaaacgggcagttcc	13	15	0	0	rs138648763	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208061527	A	A	208061527	1	1	17	0	1	0	0	0	0	0	0	0	3036	667	23	1		1	CD34	1	208061527	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	324221	208061527	41189094	75	34672											
KCTD3	51133	broad.mit.edu	37	chr1	215747143	215747143	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcagatttagtacctcaaGacaaactcttatgtggattc	7	8	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215747143	T	T	215747143	3	4	17	1	0	0	0	0	1	0	0	0	8180	942	33	3	104	3	KCTD3	1	215747143	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	7685616	215747143	33503478	76	34673											
USH2A	7399	broad.mit.edu	37	chr1	216073298	216073298	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgccctagaaaaggttAttgtcactaaacaacaagta	6	9	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216073298	G	G	216073298	1	3	17	0	1	0	0	0	0	0	0	0	17162	464	16	5		5	USH2A	1	216073298	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	326155	216073298	33177323	77	34674											
USH2A	7399	broad.mit.edu	37	chr1	216373189	216373189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtttcatgaccttcgtaGgaaacacatggctgaccacc	10	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216373189	T	T	216373189	2	4	17	1	0	0	0	0	0	0	0	1	17162	987	35	2		2	USH2A	1	216373189	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	299891	216373189	32877432	78	34675											
EPRS	2058	broad.mit.edu	37	chr1	220193310	220193310	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtccttacttcttgtcaattCtaagtaacattaaacatacc	3	10	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220193310	A	A	220193310	1	1	17	0	1	0	0	0	0	0	0	0	5233	928	32	3		3	EPRS	1	220193310	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3820121	220193310	29057311	79	34676											
ENAH	55740	broad.mit.edu	37	chr1	225692753	225692753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttttccttggagaatccCgtctatgaaggggaaaacca	10	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225692753	A	A	225692753	3	1	17	1	0	0	0	0	1	0	0	0	5153	652	23	1	250	1	ENAH	1	225692753	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	5499443	225692753	23557868	80	34677											
CABC1	56997	broad.mit.edu	37	chr1	227152774	227152774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagttccacttctcagtccCgcatgcagccggagcctcca	10	16	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227152774	A	A	227152774	3	1	17	1	0	0	0	0	1	0	0	0	2553	652	23	1	257	1	CABC1	1	227152774	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1460021	227152774	22097847	81	34678											
WNT3A	89780	broad.mit.edu	37	chr1	228238405	228238405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgcctcagccggtgtggCctttgcagtgacacgctcat	11	13	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228238405	A	A	228238405	3	1	17	1	0	0	0	0	1	0	0	0	17516	739	26	3	372	3	WNT3A	1	228238405	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1085631	228238405	21012216	82	34679											
ABCB10	23456	broad.mit.edu	37	chr1	229666038	229666038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccgtgacagatcctgacGgaatggaaaggctgaaatcc	13	9	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229666038	T	T	229666038	3	4	17	1	0	0	0	0	1	0	0	0	41	1116	39	1	687	1	ABCB10	1	229666038	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1427633	229666038	19584583	83	34680											
PGBD5	79605	broad.mit.edu	37	chr1	230486647	230486647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgagcccaagtcgcccGgattttcttccccgaccctc	8	17	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230486647	A	A	230486647	1	1	17	0	1	0	0	0	0	0	0	0	11879	1131	39	4		4	PGBD5	1	230486647	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	820609	230486647	18763974	84	34681											
C1orf198	84886	broad.mit.edu	37	chr1	231004224	231004224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgctcatgaccgccgagCgcgaagccgcgatcgccgcc	12	19	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231004224	A	A	231004224	3	1	17	1	0	0	0	0	1	0	0	0	2046	768	27	3	964	3	C1orf198	1	231004224	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	517577	231004224	18246397	85	34682											
HEATR1	55127	broad.mit.edu	37	chr1	236719226	236719226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcaagatgctcataaacGgacccatgtgattctaccaa	7	11	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236719226	T	T	236719226	3	4	17	1	0	0	0	0	1	0	0	0	7094	1116	39	1	934	1	HEATR1	1	236719226	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5715002	236719226	12531395	86	34683											
RYR2	6262	broad.mit.edu	37	chr1	237774250	237774250	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgcagtgtttggatccTctgcagttcatgtctcttca	10	9	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237774250	A	A	237774250	2	1	17	1	0	0	0	0	0	0	0	1	13880	1538	54	5		5	RYR2	1	237774250	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	1055024	237774250	11476371	87	34684											
FMN2	56776	broad.mit.edu	37	chr1	240492590	240492590	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgagatgaggataaacatcTgtttatgtgaattatatttt	8	2	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240492590	A	A	240492590	1	1	17	0	1	0	0	0	0	0	0	0	6008	1595	55	5		5	FMN2	1	240492590	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	2718340	240492590	8758031	88	34685											
FMN2	56776	broad.mit.edu	37	chr1	240555866	240555866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagagactcataaatggtgAgaaattactttatttcctcc	6	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240555866	G	G	240555866	1	3	17	0	1	0	0	0	0	0	0	0	6008	319	11	5		5	FMN2	1	240555866	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	63276	240555866	8694755	89	34686											
CEP170	9859	broad.mit.edu	37	chr1	243354602	243354602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtaaatgaagcatgccCtgcacctgttatatgggaac	10	8	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243354602	A	A	243354602	3	1	17	1	0	0	0	0	1	0	0	0	3280	681	24	2	4010	2	CEP170	1	243354602	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2798736	243354602	5896019	90	34687											
AKT3	10000	broad.mit.edu	37	chr1	243800930	243800930	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacctttgcaataatgacttCtttcttcagaatcttcatag	4	9	5	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243800930	A	A	243800930	4	1	17	1	0	0	0	0	0	1	0	0	481	922	32	3	979	3	AKT3	1	243800930	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	446328	243800930	5449691	91	34688											
ZNF695	57116	broad.mit.edu	37	chr1	247150209	247150209	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtaaaaatattctgctGtgaagttgtgaataggtatt	9	3	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247150209	T	T	247150209	1	4	17	0	1	0	0	0	0	0	0	0	18225	1392	48	3		3	ZNF695	1	247150209	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	3349279	247150209	2100412	92	34689											
ZNF695	57116	broad.mit.edu	37	chr1	247171298	247171298	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcctgcggcagtcaccCgggactctccgagaggcagc	15	14	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247171298	A	A	247171298	1	1	17	0	1	0	0	0	0	0	0	0	18225	667	23	1		1	ZNF695	1	247171298	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	21089	247171298	2079323	93	34690											
OR2W5	441932	broad.mit.edu	37	chr1	247654685	247654685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctgctgtggaacctgGggggtccagagaagaccatc	14	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247654685	T	T	247654685	3	4	17	1	0	0	0	0	1	0	0	0	11128	1232	43	2	258	2	OR2W5	1	247654685	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	483387	247654685	1595936	94	34691											
OR2L13	284521	broad.mit.edu	37	chr1	248186052	248186052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatccctgcgatctctgaCagaggacaaggttctggctg	12	10	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248186052	A	A	248186052	1	1	17	0	1	0	0	0	0	0	0	0	11100	493	17	3		3	OR2L13	1	248186052	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	531367	248186052	1064569	95	34692											
OR2M5	127059	broad.mit.edu	37	chr1	248308680	248308680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgctcatctgctctacCgtacccaagatggccttcaa	6	15	5	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308680	A	A	248308680	2	1	17	1	0	0	0	0	0	0	0	1	11107	639	23	1		1	OR2M5	1	248308680	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	122628	248308680	941941	96	34693											
OR2T12	127064	broad.mit.edu	37	chr1	248458178	248458178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagagcaggtggcaaaggCcttcttgcgggcttctgtag	15	8	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458178	A	A	248458178	3	1	17	1	0	0	0	0	1	0	0	0	11113	739	26	3	262	3	OR2T12	1	248458178	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	149498	248458178	792443	97	34694											
OR2T3	343173	broad.mit.edu	37	chr1	248637213	248637213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttttctgtgagactcctGccctgctgaagctctcctgc	9	13	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248637213	T	T	248637213	3	4	17	1	0	0	0	0	1	0	0	0	11117	1319	46	3	564	3	OR2T3	1	248637213	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	179035	248637213	613408	98	34695											
TPO	7173	broad.mit.edu	37	chr2	1497701	1497701	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacaagcatcctgacaacatCgatgtctggctgggaggctt	11	10	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1497701	G	G	1497701	3	3	17	1	0	0	0	0	1	0	0	0	16534	874	31	4	1934	4	TPO	2	1497701	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08		1497701	241701672	99	34696											
GRHL1	29841	broad.mit.edu	37	chr2	10099055	10099055	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctgtaacagcaaaatggGagtttgtttaaatgaacaac	8	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10099055	T	T	10099055	1	4	17	0	1	0	0	0	0	0	0	0	6829	1189	41	3		3	GRHL1	2	10099055	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	8601354	10099055	233100318	100	34697											
APOB	338	broad.mit.edu	37	chr2	21226018	21226018	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctcagggtgagccctgtGtgttcccagtggtacttgtt	12	10	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21226018	T	T	21226018	3	4	17	1	0	0	0	0	1	0	0	0	787	1368	48	3	1419	3	APOB	2	21226018	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	11126963	21226018	221973355	101	34698											
ASXL2	55252	broad.mit.edu	37	chr2	25967292	25967292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagactggaaaacgagccctGggagagacctgcgatggatg	16	8	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25967292	T	T	25967292	2	4	17	1	0	0	0	0	0	0	0	1	1071	1335	47	2		2	ASXL2	2	25967292	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	4741274	25967292	217232081	102	34699											
DNAJC5G	285126	broad.mit.edu	37	chr2	27502942	27502942	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgccacctggtgatgctaatGagtaactgcaaggtaacggt	12	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27502942	T	T	27502942	1	4	17	0	1	0	0	0	0	0	0	0	4692	1305	45	3		3	DNAJC5G	2	27502942	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1535650	27502942	215696431	103	34700											
ALK	238	broad.mit.edu	37	chr2	29754669	29754669	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgctcaacctggacctaccGattaaaggacaatcatgagt	8	10	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29754669	T	T	29754669	1	4	17	0	1	0	0	0	0	0	0	0	525	1073	37	3		3	ALK	2	29754669	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2251727	29754669	213444704	104	34701											
EHD3	30845	broad.mit.edu	37	chr2	31489306	31489306	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagggacaagcccatgtaCgacgagatcttctacaccct	9	14	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31489306	T	T	31489306	2	4	17	1	0	0	0	0	0	0	0	1	5019	547	19	4		4	EHD3	2	31489306	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1734637	31489306	211710067	105	34702											
DHX57	90957	broad.mit.edu	37	chr2	39088243	39088243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtactggcagaaagttcaCaggagggtcactatacttgt	13	7	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39088243	A	A	39088243	3	1	17	1	0	0	0	0	1	0	0	0	4553	478	17	3	2931	3	DHX57	2	39088243	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	7598937	39088243	204111130	106	34703											
SOS1	6654	broad.mit.edu	37	chr2	39285871	39285871	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagggtttcttcgcttcctCttttcaatagctgattgggc	9	9	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39285871	A	A	39285871	3	1	17	1	0	0	0	0	1	0	0	0	15050	912	32	3	3797	3	SOS1	2	39285871	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	197628	39285871	203913502	107	34704											
ABCG5	64240	broad.mit.edu	37	chr2	44051104	44051104	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggcgcccacaaactgGtaaaggagacctacgcggtc	15	11	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44051104	T	T	44051104	4	4	17	1	0	0	0	0	0	1	0	0	71	1256	44	3	703	3	ABCG5	2	44051104	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	4765233	44051104	199148269	108	34705											
TTC7A	57217	broad.mit.edu	37	chr2	47256256	47256256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgcccccagtgcctggGgctcccttgagttgagtgtg	13	14	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47256256	T	T	47256256	1	4	17	0	1	0	0	0	0	0	0	0	16838	1247	43	2		2	TTC7A	2	47256256	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3205152	47256256	195943117	109	34706											
MSH2	4436	broad.mit.edu	37	chr2	47690292	47690292	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataagtgcagccagagatctTggtaagaatgggtcattgga	13	5	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47690292	C	C	47690292	2	2	17	1	0	0	0	0	0	0	0	1	9964	1826	63	5		5	MSH2	2	47690292	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	434036	47690292	195509081	110	34707											
NRXN1	9378	broad.mit.edu	37	chr2	50883611	50883611	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttcagtttttgctctGtttaaacattcacaccaact	3	10	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50883611	A	A	50883611	1	1	17	0	1	0	0	0	0	0	0	0	10760	1392	48	4		4	NRXN1	2	50883611	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3193319	50883611	192315762	111	34708											
RTN4	57142	broad.mit.edu	37	chr2	55201711	55201711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcatgagctaccgcgcCcggcccacattttcatcccc	8	18	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55201711	A	A	55201711	1	1	17	0	1	0	0	0	0	0	0	0	13839	638	22	2		2	RTN4	2	55201711	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	4318100	55201711	187997662	112	34709											
TMEM17	200728	broad.mit.edu	37	chr2	62759683	62759683	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttttttttttacagcccaGaggtcctttattttcctttt	4	8	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62759683	T	T	62759683	1	4	17	0	1	0	0	0	0	0	0	0	16208	957	33	3		3	TMEM17	2	62759683	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	7557972	62759683	180439690	113	34710											
OTX1	5013	broad.mit.edu	37	chr2	63280185	63280185	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgggcctggccgggccCgccatggacctcctgcaccc	15	18	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63280185	A	A	63280185	2	1	17	1	0	0	0	0	0	0	0	1	11414	639	23	1		1	OTX1	2	63280185	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	520502	63280185	179919188	114	34711											
C2orf86	51057	broad.mit.edu	37	chr2	63380691	63380691	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgtctttttcaagttcattCcttctgtcaattatttgtct	4	8	6	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63380691	G	G	63380691	3	3	17	1	0	0	0	0	1	0	0	0	2223	854	30	4	155	4	C2orf86	2	63380691	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	100506	63380691	179818682	115	34712											
PELI1	57162	broad.mit.edu	37	chr2	64323347	64323347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctccatattccaggcttgGagtcttctgtgaacccattg	8	12	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64323347	T	T	64323347	3	4	17	1	0	0	0	0	1	0	0	0	11815	1174	41	3	662	3	PELI1	2	64323347	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	942656	64323347	178876026	116	34713											
APLF	200558	broad.mit.edu	37	chr2	68765342	68765343	+	Nonsense_Mutation	DNP	TG	AT	AT													aagaggacatcctgcatgtaTggggcaaactgctataggta							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	68765343	AT	AT	68765342	4	1	17	1	0	0	0	0	0	1	0	0	778	1471	51	5	1169	5	APLF	2	68765342	Nonsense_Mutation	DNP	TG	TCGA-05-4417-01A-22D-1855-08	4441995	68765342	174434031	117	34714											
DYSF	8291	broad.mit.edu	37	chr2	71801487	71801487	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgcagctgtgtttgccCttgagggggccctggtatgt	16	10	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71801487	T	T	71801487	3	4	17	1	0	0	0	0	1	0	0	0	4899	681	24	4	3644	4	DYSF	2	71801487	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3036145	71801487	171397886	118	34715											
ALMS1	7840	broad.mit.edu	37	chr2	73677380	73677380	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcttcttactcacacacAgagaagcctggtattttcta	6	11	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73677380	T	T	73677380	2	4	17	1	0	0	0	0	0	0	0	1	535	175	7	5		5	ALMS1	2	73677380	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	1875893	73677380	169521993	119	34716											
MOGS	7841	broad.mit.edu	37	chr2	74688563	74688563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgttggcacggagctcacCgtggagtttggcagcccgag	15	12	1	0	rs35533773	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74688563	A	A	74688563	3	1	17	1	0	0	0	0	1	0	0	0	9791	652	23	1	164	1	MOGS	2	74688563	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1011183	74688563	168510810	120	34717											
DOK1	1796	broad.mit.edu	37	chr2	74783970	74783970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggtggtgccaagctcGggtgaaggaggagggctatg	19	6	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74783970	T	T	74783970	3	4	17	1	0	0	0	0	1	0	0	0	4736	1116	39	1	1193	1	DOK1	2	74783970	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	95407	74783970	168415403	121	34718											
LRRTM4	80059	broad.mit.edu	37	chr2	77748824	77748824	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccaaaaacgtttccccCctctctcagctttcttctta	2	16	5	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77748824	A	A	77748824	1	1	17	0	1	0	0	0	0	0	0	0	9129	638	22	2		2	LRRTM4	2	77748824	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	2964854	77748824	165450549	122	34719											
REG1B	5968	broad.mit.edu	37	chr2	79313600	79313600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtgagcacagacaccaGgttgcctgaattcatgttct	11	10	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79313600	T	T	79313600	3	4	17	1	0	0	0	0	1	0	0	0	13319	991	35	2	298	2	REG1B	2	79313600	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1564776	79313600	163885773	123	34720											
RMND5A	64795	broad.mit.edu	37	chr2	87013131	87013131	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaccatcattgtagccagaAccccgccagtgcagcatcca	8	16	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87013131	C	C	87013131	1	2	17	0	1	0	0	0	0	0	0	0	13508	58	2	5		5	RMND5A	2	87013131	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	7699531	87013131	156186242	124	34721											
RMND5A	64795	broad.mit.edu	37	chr2	87565663	87565663	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagcacagcttctcttcctCctgctactctggctcccagg	7	18	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87565663	A	A	87565663	1	1	17	0	1	0	0	0	0	0	0	0	13508	870	30	3		3	RMND5A	2	87565663	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	552532	87565663	155633710	125	34722											
SMYD1	150572	broad.mit.edu	37	chr2	88407897	88407897	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgctcccacaggaagctcTaccaccccaacaatgcccaa	5	17	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88407897	A	A	88407897	3	1	17	1	0	0	0	0	1	0	0	0	14935	1522	53	5	1187	5	SMYD1	2	88407897	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	842234	88407897	154791476	126	34723											
THNSL2	55258	broad.mit.edu	37	chr2	88474960	88474960	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctagggacagtgcagcccTgccttaattgggtttgcttt	11	10	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88474960	A	A	88474960	1	1	17	0	1	0	0	0	0	0	0	0	15986	1595	55	5		5	THNSL2	2	88474960	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	67063	88474960	154724413	127	34724											
SEMA4C	54910	broad.mit.edu	37	chr2	97527282	97527282	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccagctctggtccagggCtcagcccgatgcgacgggaa	13	14	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97527282	T	T	97527282	1	4	17	0	1	0	0	0	0	0	0	0	14146	812	28	4		4	SEMA4C	2	97527282	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	9052322	97527282	145672091	128	34725											
SLC9A4	389015	broad.mit.edu	37	chr2	103142688	103142688	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttaattgagacagcttattCtgctttttctttctacttgc	5	9	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103142688	A	A	103142688	1	1	17	0	1	0	0	0	0	0	0	0	14830	928	32	3		3	SLC9A4	2	103142688	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5615406	103142688	140056685	129	34726											
ST6GAL2	84620	broad.mit.edu	37	chr2	107423432	107423432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaccaaaaattagaacCtaatgaacaactccatgtga	5	8	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107423432	A	A	107423432	1	1	17	0	1	0	0	0	0	0	0	0	15340	696	24	2		2	ST6GAL2	2	107423432	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	4280744	107423432	135775941	130	34727											
DPP10	57628	broad.mit.edu	37	chr2	116226498	116226498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgaatgggtaggaacaaCcgctgagtggtcttaagctg	13	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116226498	A	A	116226498	1	1	17	0	1	0	0	0	0	0	0	0	4767	522	18	3		3	DPP10	2	116226498	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	8803066	116226498	126972875	131	34728											
DPP10	57628	broad.mit.edu	37	chr2	116525943	116525943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgttaagcaagggggacGtggagaatttcaccacgtag	14	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116525943	T	T	116525943	3	4	17	1	0	0	0	0	1	0	0	0	4767	1145	40	3	1405	3	DPP10	2	116525943	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	299445	116525943	126673430	132	34729											
GLI2	2736	broad.mit.edu	37	chr2	121531572	121531573	+	Intron	INS	-	C	C													ccttccctctctggcttcctINScccccctttcttccctccct					rs143797363	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121531573	C	C	121531572	6	5	17	0	1	1	1	0	0	0	0	0	6502	1566	54	0		0	GLI2	2	121531572	Intron	INS	-	TCGA-05-4417-01A-22D-1855-08	5005629	121531572	121667801	133	34730											
CNTNAP5	129684	broad.mit.edu	37	chr2	125555740	125555740	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaaccctatcctgtgacCaagaatataagcctctcatc	5	13	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125555740	A	A	125555740	2	1	17	1	0	0	0	0	0	0	0	1	3682	581	21	2		2	CNTNAP5	2	125555740	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	4024168	125555740	117643633	134	34731											
GYPC	2995	broad.mit.edu	37	chr2	127451442	127451442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcctctgttcacagagCctgatccagggatgtctgga	11	11	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127451442	A	A	127451442	3	1	17	1	0	0	0	0	1	0	0	0	6975	739	26	3	119	3	GYPC	2	127451442	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1895702	127451442	115747931	135	34732											
WDR33	55339	broad.mit.edu	37	chr2	128471192	128471192	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgaaaacgtgggtcctcGggatcccgggggaaacgttc	14	12	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128471192	T	T	128471192	2	4	17	1	0	0	0	0	0	0	0	1	17414	1103	39	1		1	WDR33	2	128471192	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1019750	128471192	114728181	136	34733											
PLEKHB2	55041	broad.mit.edu	37	chr2	131960327	131960327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccaggcagccaccctcCgcgaagcccagcccagctgg	13	18	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131960327	A	A	131960327	1	1	17	0	1	0	0	0	0	0	0	0	12160	667	23	1		1	PLEKHB2	2	131960327	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3489135	131960327	111239046	137	34734											
PLEKHB2	55041	broad.mit.edu	37	chr2	132093277	132093277	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcaaataaagggatccagGtgtgagtagaatgttgctct	12	6	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132093277	A	A	132093277	1	1	17	0	1	0	0	0	0	0	0	0	12160	1276	44	4		4	PLEKHB2	2	132093277	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	132950	132093277	111106096	138	34735											
LCT	3938	broad.mit.edu	37	chr2	136570154	136570154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcaggtgttttgtggggCgttgctgatgaggcgggagg	21	4	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136570154	A	A	136570154	3	1	17	1	0	0	0	0	1	0	0	0	8765	768	27	3	3747	3	LCT	2	136570154	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4476877	136570154	106629219	139	34736											
LRP1B	53353	broad.mit.edu	37	chr2	141267686	141267686	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccactggaaaatgtctaccAtttacattttctacagtaag	5	9	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141267686	G	G	141267686	1	3	17	0	1	0	0	0	0	0	0	0	9042	232	8	5		5	LRP1B	2	141267686	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	4697532	141267686	101931687	140	34737											
LRP1B	53353	broad.mit.edu	37	chr2	141771071	141771071	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaatcttttataacttctGtgaagtattattatatgtga	5	3	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141771071	A	A	141771071	1	1	17	0	1	0	0	0	0	0	0	0	9042	1392	48	4		4	LRP1B	2	141771071	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	503385	141771071	101428302	141	34738											
KYNU	8942	broad.mit.edu	37	chr2	143799869	143799869	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaacaataaataatataCcttacagaaaatctgatata	2	6	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143799869	A	A	143799869	1	1	17	0	1	0	0	0	0	0	0	0	8659	522	18	3		3	KYNU	2	143799869	3'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	2028798	143799869	99399504	142	34739											
NEB	4703	broad.mit.edu	37	chr2	152362826	152362826	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaaagaaaacccagcaGttcctggagaaagactagga	11	7	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152362826	C	C	152362826	1	2	17	0	1	0	0	0	0	0	0	0	10397	1044	36	4		4	NEB	2	152362826	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	8562957	152362826	90836547	143	34740											
FMNL2	114793	broad.mit.edu	37	chr2	153471554	153471554	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaattgcttacatttcAgctggttgcaaagcagaatt	9	6	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153471554	T	T	153471554	1	4	17	0	1	0	0	0	0	0	0	0	6010	203	7	5		5	FMNL2	2	153471554	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	1108728	153471554	89727819	144	34741											
GALNT13	114805	broad.mit.edu	37	chr2	155265538	155265538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtttagacaacatgggcCgcaaggaaaatgaaaaagtg	12	5	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155265538	A	A	155265538	3	1	17	1	0	0	0	0	1	0	0	0	6273	652	23	1	1373	1	GALNT13	2	155265538	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1793984	155265538	87933835	145	34742											
KCNJ3	3760	broad.mit.edu	37	chr2	155711609	155711609	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaaaagcctacagcttGggagacttgcccatgaaact	9	10	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155711609	T	T	155711609	3	4	17	1	0	0	0	0	1	0	0	0	8122	1339	47	2	1300	2	KCNJ3	2	155711609	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	446071	155711609	87487764	146	34743											
NR4A2	4929	broad.mit.edu	37	chr2	157186088	157186088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctgccggcgggctccGggttcatggggacgtgcagg	21	10	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157186088	T	T	157186088	3	4	17	1	0	0	0	0	1	0	0	0	10728	1116	39	1	1209	1	NR4A2	2	157186088	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1474479	157186088	86013285	147	34744											
PKP4	8502	broad.mit.edu	37	chr2	159530449	159530449	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgacattggagcgagacCgattcaaatcacatccttcc	8	12	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159530449	A	A	159530449	2	1	17	1	0	0	0	0	0	0	0	1	12082	644	23	1		1	PKP4	2	159530449	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	2344361	159530449	83668924	148	34745											
FAP	2191	broad.mit.edu	37	chr2	163045608	163045608	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacaccaaagaaaatattaCatacacttgaattagcaagg	5	7	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163045608	T	T	163045608	1	4	17	0	1	0	0	0	0	0	0	0	5730	493	17	4		4	FAP	2	163045608	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3515159	163045608	80153765	149	34746											
SCN1A	6323	broad.mit.edu	37	chr2	166895908	166895908	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttagaaaggtttttgaattTggtgcttttttttttttttt	8	1	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166895908	C	C	166895908	1	2	17	0	1	0	0	0	0	0	0	0	14027	1827	63	5		5	SCN1A	2	166895908	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	3850300	166895908	76303465	150	34747											
SCN7A	6332	broad.mit.edu	37	chr2	167322380	167322380	+	Frame_Shift_Del	DEL	C	-	-													aacatttatgtttcaagttgCccatgaagagccccatccca							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167322380	-	-	167322380	7	5	17	1	0	1	0	1	0	0	0	0	14036	739	26	0	4342	0	SCN7A	2	167322380	Frame_Shift_Del	DEL	C	TCGA-05-4417-01A-22D-1855-08	426472	167322380	75876993	151	34748											
ABCB11	8647	broad.mit.edu	37	chr2	169792745	169792745	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatctgcaagattacctgtcCcaccatctccagggcctgct	8	15	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169792745	G	G	169792745	3	3	17	1	0	0	0	0	1	0	0	0	42	632	22	4	1184	4	ABCB11	2	169792745	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2470365	169792745	73406628	152	34749											
LRP2	4036	broad.mit.edu	37	chr2	170044911	170044911	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagatcaccagtgtccttGatcccctttcccccatcatc	4	17	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170044911	T	T	170044911	1	4	17	0	1	0	0	0	0	0	0	0	9043	1305	45	3		3	LRP2	2	170044911	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	252166	170044911	73154462	153	34750											
TTN	7273	broad.mit.edu	37	chr2	179397295	179397295	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taactcaagctcttcttcaaGacgcagcctctcttcctctg	5	15	6	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179397295	T	T	179397295	3	4	17	1	0	0	0	0	1	0	0	0	16861	942	33	3	3952	3	TTN	2	179397295	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	9352384	179397295	63802078	154	34751											
TTN	7273	broad.mit.edu	37	chr2	179482722	179482722	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgatctcagcacctcCatcatactctggtggttccc	8	13	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179482722	A	A	179482722	4	1	17	1	0	0	0	0	0	1	0	0	16861	603	21	2	60777	2	TTN	2	179482722	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	85427	179482722	63716651	155	34752											
TTN	7273	broad.mit.edu	37	chr2	179567381	179567381	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatgcgctttgtaaactgaAttggttcagctgtttaagta	10	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179567381	G	G	179567381	3	3	17	1	0	0	0	0	1	0	0	0	16861	101	4	5	74320	5	TTN	2	179567381	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	84659	179567381	63631992	156	34753											
TTN	7273	broad.mit.edu	37	chr2	179599067	179599067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactaacctttgagtaagtGggttgccatgcagccacact	10	11	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179599067	T	T	179599067	3	4	17	1	0	0	0	0	1	0	0	0	16861	1348	47	2	89289	2	TTN	2	179599067	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	31686	179599067	63600306	157	34754											
TTN	7273	broad.mit.edu	37	chr2	179648941	179648942	+	Missense_Mutation	DNP	GG	TT	TT													gcgaaggggaactgtggcaaGggtgtgggctctgcccttac							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179648942	TT	TT	179648941	3	4	17	1	0	0	0	0	1	0	0	0	16861	987	35	2	108745	2	TTN	2	179648941	Missense_Mutation	DNP	GG	TCGA-05-4417-01A-22D-1855-08	49874	179648941	63550432	158	34755											
ITGAV	3685	broad.mit.edu	37	chr2	187529244	187529244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaagaagatctatattgGggatgacaaccctctgacat	8	8	3	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187529244	T	T	187529244	3	4	17	1	0	0	0	0	1	0	0	0	7958	1232	43	2	2078	2	ITGAV	2	187529244	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	7880303	187529244	55670129	159	34756											
CALCRL	10203	broad.mit.edu	37	chr2	188247840	188247840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacttataatgatataatGggagtagttttcttttaaaa	7	3	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188247840	T	T	188247840	1	4	17	0	1	0	0	0	0	0	0	0	2606	1363	47	2		2	CALCRL	2	188247840	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	718596	188247840	54951533	160	34757											
WDR75	84128	broad.mit.edu	37	chr2	190323435	190323435	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactacatcaccacttatcaAgagactttaataattaaggg	5	8	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190323435	G	G	190323435	1	3	17	0	1	0	0	0	0	0	0	0	17452	87	3	5		5	WDR75	2	190323435	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	2075595	190323435	52875938	161	34758											
PGAP1	80055	broad.mit.edu	37	chr2	197729738	197729738	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagagaatataactgtcCtctataagcaagaaggatat	8	5	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197729738	A	A	197729738	4	1	17	1	0	0	0	0	0	1	0	0	11872	690	24	2	966	2	PGAP1	2	197729738	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	7406303	197729738	45469635	162	34759											
SF3B1	23451	broad.mit.edu	37	chr2	198274609	198274609	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccaggagtagcagctccCgctggtgtgtggctaggtgt	16	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198274609	A	A	198274609	2	1	17	1	0	0	0	0	0	0	0	1	14262	639	23	1		1	SF3B1	2	198274609	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	544871	198274609	44924764	163	34760											
AOX1	316	broad.mit.edu	37	chr2	201466909	201466909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actaaaatgtcaaacagatcTttcctctatgatagggtcct	6	9	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201466909	A	A	201466909	1	1	17	0	1	0	0	0	0	0	0	0	731	1624	56	5		5	AOX1	2	201466909	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	3192300	201466909	41732464	164	34761											
ALS2CR12	130540	broad.mit.edu	37	chr2	202172361	202172361	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttctgtggaagtgacagGaaagcacatatatgtgtaaa	10	4	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202172361	T	T	202172361	1	4	17	0	1	0	0	0	0	0	0	0	553	1189	41	3		3	ALS2CR12	2	202172361	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	705452	202172361	41027012	165	34762											
DYTN	391475	broad.mit.edu	37	chr2	207516601	207516601	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaaggccctgcacactcGctgagctccactgtacaggt	11	13	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207516601	A	A	207516601	4	1	17	1	0	0	0	0	0	1	0	0	4901	1095	38	4	62	4	DYTN	2	207516601	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5344240	207516601	35682772	166	34763											
DYTN	391475	broad.mit.edu	37	chr2	207528023	207528023	+	Frame_Shift_Del	DEL	C	-	-													attcttgatctgcaaataatCccctccctttggaacctttt							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	207528023	-	-	207528023	7	5	17	1	0	1	0	1	0	0	0	0	4901	855	30	0	507	0	DYTN	2	207528023	Frame_Shift_Del	DEL	C	TCGA-05-4417-01A-22D-1855-08	11422	207528023	35671350	167	34764											
CPS1	1373	broad.mit.edu	37	chr2	211473214	211473214	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatggtcaccaagattccCcgctgggatcttgaccgttt	9	12	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211473214	A	A	211473214	2	1	17	1	0	0	0	0	0	0	0	1	3855	610	22	2		2	CPS1	2	211473214	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	3945191	211473214	31726159	168	34765											
CPS1	1373	broad.mit.edu	37	chr2	211515108	211515108	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtctgctatgaatgtggtAttctctgaggatgagatgaa	14	4	2	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211515108	T	T	211515108	2	4	17	1	0	0	0	0	0	0	0	1	3855	436	16	5		5	CPS1	2	211515108	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	41894	211515108	31684265	169	34766											
ABCA12	26154	broad.mit.edu	37	chr2	215798856	215798856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatatttaaagcagtcttGttggtttccagcagatcaaa	8	6	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215798856	T	T	215798856	3	4	17	1	0	0	0	0	1	0	0	0	30	1368	48	3	169	3	ABCA12	2	215798856	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	4283748	215798856	27400517	170	34767											
TNS1	7145	broad.mit.edu	37	chr2	218674735	218674735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagaaaccaacccaagGgggagtcatgggagctggcg	16	9	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218674735	T	T	218674735	1	4	17	0	1	0	0	0	0	0	0	0	16466	1247	43	2		2	TNS1	2	218674735	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2875879	218674735	24524638	171	34768											
PNKD	25953	broad.mit.edu	37	chr2	219137340	219137340	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcatcctcaccaagcGggaagtggacaaggaccgtg	11	13	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219137340	T	T	219137340	1	4	17	0	1	0	0	0	0	0	0	0	12241	1116	39	1		1	PNKD	2	219137340	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	462605	219137340	24062033	172	34769											
CTDSP1	58190	broad.mit.edu	37	chr2	219266977	219266977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcagcccgggtctcgggGggcatcccccaccctggcct	12	20	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219266977	T	T	219266977	1	4	17	0	1	0	0	0	0	0	0	0	4037	1247	43	2		2	CTDSP1	2	219266977	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	129637	219266977	23932396	173	34770											
DOCK10	55619	broad.mit.edu	37	chr2	225635236	225635236	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctcaggaagttcaaggaaGaacatcccaacagcgagaag	11	9	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225635236	A	A	225635236	1	1	17	0	1	0	0	0	0	0	0	0	4725	957	33	4		4	DOCK10	2	225635236	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	6368259	225635236	17564137	174	34771											
COL4A3	1285	broad.mit.edu	37	chr2	228118303	228118303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggttaacaggacccccGggaccaccaggaacagttat	11	11	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228118303	T	T	228118303	2	4	17	1	0	0	0	0	0	0	0	1	3723	1103	39	1		1	COL4A3	2	228118303	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	2483067	228118303	15081070	175	34772											
SP140	11262	broad.mit.edu	37	chr2	231109676	231109676	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatcctgaggtctgtgctcTcatcactgtgccttgtttat	9	11	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231109676	C	C	231109676	1	2	17	0	1	0	0	0	0	0	0	0	15076	1566	54	5		5	SP140	2	231109676	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	2991373	231109676	12089697	176	34773											
TRPM8	79054	broad.mit.edu	37	chr2	234916722	234916722	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttctttgcagaatgaggcAtcgatttagacaactggata	9	7	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234916722	T	T	234916722	3	4	17	1	0	0	0	0	1	0	0	0	16717	217	8	5	3329	5	TRPM8	2	234916722	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	3807046	234916722	8282651	177	34774											
ILKAP	80895	broad.mit.edu	37	chr2	239079704	239079704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataaacgggttttaggccCaaccaaaaaataaaaaataa	5	6	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239079704	A	A	239079704	1	1	17	0	1	0	0	0	0	0	0	0	7784	609	21	2		2	ILKAP	2	239079704	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	4162982	239079704	4119669	178	34775											
ANKMY1	51281	broad.mit.edu	37	chr2	241494221	241494221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcccatcactcttggaaGgataaaggccagccaccaga	9	14	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241494221	T	T	241494221	1	4	17	0	1	0	0	0	0	0	0	0	634	1015	35	2		2	ANKMY1	2	241494221	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2414517	241494221	1705152	179	34776											
ANO7	50636	broad.mit.edu	37	chr2	242149096	242149097	+	Intron	DNP	CC	AA	AA													cacgcctccatcctcctgcaCcatgtggggtggttttgtcc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	242149097	AA	AA	242149096	1	1	17	0	1	0	0	0	0	0	0	0	702	522	18	3		3	ANO7	2	242149096	Intron	DNP	CC	TCGA-05-4417-01A-22D-1855-08	654875	242149096	1050277	180	34777											
DTYMK	1841	broad.mit.edu	37	chr2	242617967	242617967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatggccaaacgctcccCgcttggcagcatccgccagc	10	18	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242617967	A	A	242617967	3	1	17	1	0	0	0	0	1	0	0	0	4838	652	23	1	218	1	DTYMK	2	242617967	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	468871	242617967	581406	181	34778											
C2orf85	285093	broad.mit.edu	37	chr2	242815319	242815319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgccgtaggccgcacGccgagccctacgaggacttc	13	16	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242815319	T	T	242815319	3	4	17	1	0	0	0	0	1	0	0	0	2222	1087	38	3	1618	3	C2orf85	2	242815319	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	197352	242815319	384054	182	34779											
SUMF1	285362	broad.mit.edu	37	chr3	4452618	4452618	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccattcccatgcgttcccCactatgttgtataagccata	6	13	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4452618	A	A	4452618	2	1	17	1	0	0	0	0	0	0	0	1	15503	581	21	2		2	SUMF1	3	4452618	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08		4452618	193569812	183	34780											
ATP2B2	491	broad.mit.edu	37	chr3	10387773	10387773	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgttggtcccgtcccccGtcacggccaccacctgccgc	10	21	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10387773	A	A	10387773	3	1	17	1	0	0	0	0	1	0	0	0	1144	1145	40	4	1306	4	ATP2B2	3	10387773	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5935155	10387773	187634657	184	34781											
SLC6A11	6538	broad.mit.edu	37	chr3	10916588	10916588	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaggacattgtgctgagtGaagtaaccccattgctctca	9	10	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10916588	T	T	10916588	1	4	17	0	1	0	0	0	0	0	0	0	14788	1305	45	3		3	SLC6A11	3	10916588	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	528815	10916588	187105842	185	34782											
LSM3	27258	broad.mit.edu	37	chr3	14220343	14220343	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcgcgagaggcgggaaaGggcgcagggtttgaaacatg	17	7	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14220343	T	T	14220343	1	4	17	1	0	0	0	0	0	0	0	0	9144	1015	35	2		2	LSM3	3	14220343	Translation_Start_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	3303755	14220343	183802087	186	34783											
GALNTL2	117248	broad.mit.edu	37	chr3	16261607	16261607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatgccccatacttccCtttgaggtatcttctttctg	8	12	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16261607	A	A	16261607	1	1	17	0	1	0	0	0	0	0	0	0	6284	696	24	2		2	GALNTL2	3	16261607	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2041264	16261607	181760823	187	34784											
TOP2B	7155	broad.mit.edu	37	chr3	25654005	25654005	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacaagaggtatgtcataCcttcttcttcttcagcaact	6	10	5	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25654005	A	A	25654005	5	1	17	1	0	0	0	0	0	0	1	0	16490	521	18	3	1129	3	TOP2B	3	25654005	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	9392398	25654005	172368425	188	34785											
ARPP21	10777	broad.mit.edu	37	chr3	35833787	35833787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactgagatgtctgaaggCtgccttttgaaccagtagtt	12	7	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35833787	A	A	35833787	1	1	17	0	1	0	0	0	0	0	0	0	982	812	28	3		3	ARPP21	3	35833787	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	10179782	35833787	162188643	189	34786											
ZNF621	285268	broad.mit.edu	37	chr3	40573561	40573561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaagggctagttataaaGcaggaagcctctgaagaaac	11	6	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40573561	T	T	40573561	3	4	17	1	0	0	0	0	1	0	0	0	18172	962	34	3	314	3	ZNF621	3	40573561	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	4739774	40573561	157448869	190	34787											
HHATL	57467	broad.mit.edu	37	chr3	42738964	42738964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtctgttttcctggggcGgcagccctgcccccatttct	12	14	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42738964	T	T	42738964	1	4	17	0	1	0	0	0	0	0	0	0	7157	1131	39	1		1	HHATL	3	42738964	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2165403	42738964	155283466	191	34788											
CCDC12	151903	broad.mit.edu	37	chr3	46982366	46982366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgaacaggacagccatGggcagaaagaagaggggagg	18	6	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46982366	T	T	46982366	1	4	17	0	1	0	0	0	0	0	0	0	2781	1363	47	2		2	CCDC12	3	46982366	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	4243402	46982366	151040064	192	34789											
SMARCC1	6599	broad.mit.edu	37	chr3	47703821	47703821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatggtttagggaagtccaTacccaaagccgcttttgctg	11	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47703821	A	A	47703821	1	1	17	0	1	0	0	0	0	0	0	0	14889	1421	49	5		5	SMARCC1	3	47703821	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	721455	47703821	150318609	193	34790											
COL7A1	1294	broad.mit.edu	37	chr3	48603991	48603991	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggaccggcaggccctggCcgcccctatgtgcaacagat	13	15	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48603991	A	A	48603991	2	1	17	1	0	0	0	0	0	0	0	1	3736	726	26	3		3	COL7A1	3	48603991	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	900170	48603991	149418439	194	34791											
CCDC71	64925	broad.mit.edu	37	chr3	49200414	49200414	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccatgccttaggagatcGgggcccaagccgtgttctct	12	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49200414	T	T	49200414	2	4	17	1	0	0	0	0	0	0	0	1	2872	1124	39	1		1	CCDC71	3	49200414	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	596423	49200414	148822016	195	34792											
DOCK3	1795	broad.mit.edu	37	chr3	50756876	50756876	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgagctacggaaggaaTggtctgatggttaagataaa	12	6	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50756876	G	G	50756876	1	3	17	0	1	0	0	0	0	0	0	0	4728	1479	51	5		5	DOCK3	3	50756876	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	1556462	50756876	147265554	196	34793											
DOCK3	1795	broad.mit.edu	37	chr3	51393803	51393803	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgtggcaaaacttgcCtaactgcccatacctgcctg	10	13	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51393803	T	T	51393803	1	4	17	0	1	0	0	0	0	0	0	0	4728	696	24	4		4	DOCK3	3	51393803	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	636927	51393803	146628627	197	34794											
DOCK3	1795	broad.mit.edu	37	chr3	51393980	51393980	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgctccatcagccccagctCtgggggcccttctctaagga	10	16	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51393980	G	G	51393980	1	3	17	0	1	0	0	0	0	0	0	0	4728	928	32	4		4	DOCK3	3	51393980	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	177	51393980	146628450	198	34795											
DUSP7	1849	broad.mit.edu	37	chr3	52088145	52088145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggagtccttggcgcagcCgaggtagaggtagggcagga	20	7	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52088145	A	A	52088145	3	1	17	1	0	0	0	0	1	0	0	0	4870	652	23	1	504	1	DUSP7	3	52088145	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	694165	52088145	145934285	199	34796											
STAB1	23166	broad.mit.edu	37	chr3	52535331	52535331	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgccggtgcgggccaccCctgtccttgcctgtgtccag	13	16	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52535331	G	G	52535331	1	3	17	0	1	0	0	0	0	0	0	0	15355	638	22	4		4	STAB1	3	52535331	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	447186	52535331	145487099	200	34797											
SFMBT1	51460	broad.mit.edu	37	chr3	52945171	52945172	+	Frame_Shift_Ins	INS	-	C	C													tttcactatctcaacagtagINScccgataactctttccttta							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52945172	C	C	52945171	7	5	17	1	0	1	1	0	0	0	0	0	14270	971	34	0	866	0	SFMBT1	3	52945171	Frame_Shift_Ins	INS	-	TCGA-05-4417-01A-22D-1855-08	409840	52945171	145077259	201	34798											
CACNA2D3	55799	broad.mit.edu	37	chr3	54603989	54603989	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttgacctaggtacatccAggcagcaacttctccgaaag	8	14	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54603989	T	T	54603989	3	4	17	1	0	0	0	0	1	0	0	0	2576	188	7	5	776	5	CACNA2D3	3	54603989	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	1658818	54603989	143418441	202	34799											
ROBO1	6091	broad.mit.edu	37	chr3	78766486	78766486	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggtacagggtcacctcGggcctcacatttaaattctg	10	10	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78766486	T	T	78766486	2	4	17	1	0	0	0	0	0	0	0	1	13624	1124	39	1		1	ROBO1	3	78766486	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	24162497	78766486	119255944	203	34800											
ROBO1	6091	broad.mit.edu	37	chr3	79174588	79174588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaggaagttagtatttGggaaagagacactctacctg	12	6	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79174588	T	T	79174588	1	4	17	0	1	0	0	0	0	0	0	0	13624	1363	47	2		2	ROBO1	3	79174588	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	408102	79174588	118847842	204	34801											
VGLL3	389136	broad.mit.edu	37	chr3	87017638	87017638	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccataaacatgttggtaaaGtttaactttacagataagaa	6	5	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87017638	C	C	87017638	1	2	17	0	1	0	0	0	0	0	0	0	17287	1044	36	4		4	VGLL3	3	87017638	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	7843050	87017638	111004792	205	34802											
NSUN3	63899	broad.mit.edu	37	chr3	93794945	93794945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaacaactctggtgaccCgtcttctgcatcttctgggg	9	12	5	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93794945	A	A	93794945	1	1	17	0	1	0	0	0	0	0	0	0	10774	667	23	1		1	NSUN3	3	93794945	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	6777307	93794945	104227485	206	34803											
OR5H1	26341	broad.mit.edu	37	chr3	97852389	97852389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctacactgtcatcattcCtttgttaaatcctatcatct	2	11	5	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852389	A	A	97852389	3	1	17	1	0	0	0	0	1	0	0	0	11253	681	24	2	850	2	OR5H1	3	97852389	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4057444	97852389	100170041	207	34804											
OR5H6	79295	broad.mit.edu	37	chr3	97983970	97983970	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatctgggctctgcatctcCgcaagcagatgaccaagata	9	11	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97983970	T	T	97983970	3	4	17	1	0	0	0	0	1	0	0	0	11257	652	23	4	844	4	OR5H6	3	97983970	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	131581	97983970	100038460	208	34805											
GPR128	84873	broad.mit.edu	37	chr3	100384085	100384085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaggatatggaactctccCatccattatgttgatattta	8	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100384085	A	A	100384085	1	1	17	0	1	0	0	0	0	0	0	0	6706	609	21	2		2	GPR128	3	100384085	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2400115	100384085	97638345	209	34806											
ZBTB11	27107	broad.mit.edu	37	chr3	101378727	101378727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatggaacatataaattccCgcttggttctgcccttctca	6	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101378727	A	A	101378727	3	1	17	1	0	0	0	0	1	0	0	0	17650	652	23	1	1239	1	ZBTB11	3	101378727	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	994642	101378727	96643703	210	34807											
MYH15	22989	broad.mit.edu	37	chr3	108107873	108107873	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgggctcccctctgggcctCtgcactgcgacggatttcac	12	16	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108107873	A	A	108107873	4	1	17	1	0	0	0	0	0	1	0	0	10128	922	32	3	317	3	MYH15	3	108107873	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	6729146	108107873	89914557	211	34808											
DZIP3	9666	broad.mit.edu	37	chr3	108405608	108405608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagagacagtgttcaatGgtgaacctcttcattaaaaa	8	6	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108405608	T	T	108405608	1	4	17	0	1	0	0	0	0	0	0	0	4905	1363	47	2		2	DZIP3	3	108405608	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	297735	108405608	89616822	212	34809											
BOC	91653	broad.mit.edu	37	chr3	112969439	112969439	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgtccagcctgcgtccacCgtccagaagcccggaggcac	11	18	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112969439	T	T	112969439	2	4	17	1	0	0	0	0	0	0	0	1	1487	639	23	4		4	BOC	3	112969439	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	4563831	112969439	85052991	213	34810											
WDR52	55779	broad.mit.edu	37	chr3	113128125	113128125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaggccagcaagttacCgctgtagttaaagtccacat	9	10	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113128125	A	A	113128125	3	1	17	1	0	0	0	0	1	0	0	0	17431	652	23	1	4977	1	WDR52	3	113128125	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	158686	113128125	84894305	214	34811											
HCLS1	3059	broad.mit.edu	37	chr3	121376979	121376979	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccaattgtcctaccaatTagtcccagtatgagggctgt	9	11	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121376979	A	A	121376979	1	1	17	0	1	0	0	0	0	0	0	0	7061	1769	61	5		5	HCLS1	3	121376979	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	8248854	121376979	76645451	215	34812											
PDIA5	10954	broad.mit.edu	37	chr3	122869313	122869313	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagggaccaaggcagccgctGatggatcccagggtcatctc	13	13	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122869313	T	T	122869313	1	4	17	0	1	0	0	0	0	0	0	0	11765	1305	45	3		3	PDIA5	3	122869313	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1492334	122869313	75153117	216	34813											
FOXL2	668	broad.mit.edu	37	chr3	138664375	138664375	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcgtcggctgcgaccggGgccggcgtcgcgcgtccctg	18	16	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138664375	T	T	138664375	1	4	17	0	1	0	0	0	0	0	0	0	6077	1247	43	2		2	FOXL2	3	138664375	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	15795062	138664375	59358055	217	34814											
TRIM42	287015	broad.mit.edu	37	chr3	140396907	140396907	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctatgagcttcctggtaGggacaccagctgtgaagtcc	12	11	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140396907	T	T	140396907	1	4	17	1	0	0	0	0	0	0	0	0	16641	1015	35	2		2	TRIM42	3	140396907	Translation_Start_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	1732532	140396907	57625523	218	34815											
CPA3	1359	broad.mit.edu	37	chr3	148596572	148596572	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccactaattcttattactGttgaaaaacatgaatttaaa	3	6	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148596572	C	C	148596572	1	2	17	0	1	0	0	0	0	0	0	0	3823	1392	48	4		4	CPA3	3	148596572	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	8199665	148596572	49425858	219	34816											
MED12L	116931	broad.mit.edu	37	chr3	151148206	151148206	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatggaacagacagctcccGgaaaattaaaaataagccag	8	9	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151148206	A	A	151148206	1	1	17	0	1	0	0	0	0	0	0	0	9522	1131	39	4		4	MED12L	3	151148206	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2551634	151148206	46874224	220	34817											
PLCH1	23007	broad.mit.edu	37	chr3	155199127	155199127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcctgaccagtgcccggGggagctgattggcatcctgc	13	13	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155199127	T	T	155199127	3	4	17	1	0	0	0	0	1	0	0	0	12132	1232	43	2	373	2	PLCH1	3	155199127	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	4050921	155199127	42823303	221	34818											
SI	6476	broad.mit.edu	37	chr3	164710112	164710112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacttacaggttccagtaCtggggtaaccataaatgctg	11	8	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164710112	A	A	164710112	3	1	17	1	0	0	0	0	1	0	0	0	14410	565	20	3	596	3	SI	3	164710112	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	9510985	164710112	33312318	222	34819											
GOLIM4	27333	broad.mit.edu	37	chr3	167728606	167728606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttcagtcaaatcttcCtgaacctaaaacaaaccaca	2	13	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167728606	A	A	167728606	3	1	17	1	0	0	0	0	1	0	0	0	6630	680	24	2	232	2	GOLIM4	3	167728606	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3018494	167728606	30293824	223	34820											
PRKCI	5584	broad.mit.edu	37	chr3	169953139	169953139	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatggatagatgaggaaGgtgagtggtaaagacagggc	17	2	0	5			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169953139	T	T	169953139	4	4	17	1	0	0	0	0	0	1	0	0	12620	1014	35	2	229	2	PRKCI	3	169953139	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2224533	169953139	28069291	224	34821											
TNIK	23043	broad.mit.edu	37	chr3	170786812	170786812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcaccccattagtatcCgcatcactcaaagaggcatc	5	13	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170786812	A	A	170786812	1	1	17	0	1	0	0	0	0	0	0	0	16436	667	23	1		1	TNIK	3	170786812	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	833673	170786812	27235618	225	34822											
TNIK	23043	broad.mit.edu	37	chr3	170846537	170846537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctgagcatggggggtgttCgagcaggctgaactccacta	15	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170846537	A	A	170846537	3	1	17	1	0	0	0	0	1	0	0	0	16436	884	31	3	2415	3	TNIK	3	170846537	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	59725	170846537	27175893	226	34823											
GHSR	2693	broad.mit.edu	37	chr3	172165766	172165766	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttggcccggagtgggaaGcagatggcgaagtagcgctc	16	10	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172165766	A	A	172165766	2	1	17	1	0	0	0	0	0	0	0	1	6439	963	34	4		4	GHSR	3	172165766	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1319229	172165766	25856664	227	34824											
MFN1	55669	broad.mit.edu	37	chr3	179069732	179069732	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcgaatagccactgaagatGatctggtagaaatgcaagga	11	6	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179069732	T	T	179069732	3	4	17	1	0	0	0	0	1	0	0	0	9616	1290	45	3	163	3	MFN1	3	179069732	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	6903966	179069732	18952698	228	34825											
PSMD2	5708	broad.mit.edu	37	chr3	184025416	184025416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggtaccaataatgccCgtctggctgcaatgctgcgc	10	13	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184025416	A	A	184025416	3	1	17	1	0	0	0	0	1	0	0	0	12804	652	23	1	2288	1	PSMD2	3	184025416	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4955684	184025416	13997014	229	34826											
PCYT1A	5130	broad.mit.edu	37	chr3	195997349	195997349	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgccccgttgggtccgggCgcctcttttctcctcttcct	10	16	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	195997349	G	G	195997349	2	3	17	1	0	0	0	0	0	0	0	1	11704	755	27	4		4	PCYT1A	3	195997349	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	11971933	195997349	2025081	230	34827											
RNF168	165918	broad.mit.edu	37	chr3	196202058	196202058	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagcactaatctacagcaTtaatgaaccagcaaaactca	5	10	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196202058	C	C	196202058	1	2	17	0	1	0	0	0	0	0	0	0	13570	1508	52	5		5	RNF168	3	196202058	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	204709	196202058	1820372	231	34828											
FGFR3	2261	broad.mit.edu	37	chr4	1803633	1803633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcggtgctgggcagcgacGtggagttccactgcaaggtg	18	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1803633	A	A	1803633	3	1	17	1	0	0	0	0	1	0	0	0	5924	1145	40	4	833	4	FGFR3	4	1803633	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08		1803633	189350643	232	34829											
ADD1	118	broad.mit.edu	37	chr4	2886361	2886361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagactagcagatctctttGggtggtctcagcttatctac	9	9	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2886361	T	T	2886361	3	4	17	1	0	0	0	0	1	0	0	0	304	1348	47	2	488	2	ADD1	4	2886361	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1082728	2886361	188267915	233	34830											
JAKMIP1	152789	broad.mit.edu	37	chr4	6058530	6058530	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacattcatggaagcaaacAgatggtcaagtaacaaactt	7	8	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6058530	G	G	6058530	1	3	17	0	1	0	0	0	0	0	0	0	8010	203	7	5		5	JAKMIP1	4	6058530	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	3172169	6058530	185095746	234	34831											
MAN2B2	23324	broad.mit.edu	37	chr4	6606840	6606840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttattctgaccacaatccCaggcctcagttaccggcact	7	15	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6606840	A	A	6606840	3	1	17	1	0	0	0	0	1	0	0	0	9309	594	21	2	1640	2	MAN2B2	4	6606840	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	548310	6606840	184547436	235	34832											
LDB2	9079	broad.mit.edu	37	chr4	16900063	16900063	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtatgcctcctataaaatgGgccgaaaggagaagaataga	11	6	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16900063	C	C	16900063	3	2	17	1	0	0	0	0	1	0	0	0	8768	1232	43	4	1216	4	LDB2	4	16900063	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	10293223	16900063	174254213	236	34833											
MED28	80306	broad.mit.edu	37	chr4	17616232	17616232	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacgtgagcttctgagcCggcttccgcgcaggcgcagt	14	14	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17616232	A	A	17616232	1	1	17	0	1	0	0	0	0	0	0	0	9539	667	23	1		1	MED28	4	17616232	5'Flank	SNP	C	TCGA-05-4417-01A-22D-1855-08	716169	17616232	173538044	237	34834											
PPARGC1A	10891	broad.mit.edu	37	chr4	23825898	23825898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctaagtgaaatataaggCttacctgcagttccagagag	10	7	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23825898	A	A	23825898	1	1	17	0	1	0	0	0	0	0	0	0	12396	812	28	3		3	PPARGC1A	4	23825898	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	6209666	23825898	167328378	238	34835											
PGM2	55276	broad.mit.edu	37	chr4	37841677	37841677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttctgaatgtgttcctGggtcctctaggtctattggg	11	9	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37841677	T	T	37841677	1	4	17	0	1	0	0	0	0	0	0	0	11893	1363	47	2		2	PGM2	4	37841677	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	14015779	37841677	153312599	239	34836											
PHOX2B	8929	broad.mit.edu	37	chr4	41749304	41749304	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgaatttcaccagccgccCctcaccccacacctccccgg	5	22	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41749304	A	A	41749304	1	1	17	0	1	0	0	0	0	0	0	0	11954	638	22	2		2	PHOX2B	4	41749304	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3907627	41749304	149404972	240	34837											
GABRG1	2565	broad.mit.edu	37	chr4	46099357	46099357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcatcttcatcatctgcCttatcaacactaaataattc	1	12	7	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46099357	A	A	46099357	3	1	17	1	0	0	0	0	1	0	0	0	6231	680	24	2	1315	2	GABRG1	4	46099357	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4350053	46099357	145054919	241	34838											
PPAT	5471	broad.mit.edu	37	chr4	57267741	57267741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcacacagagtaccttccCttagagaaacaattgattca	6	10	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57267741	A	A	57267741	1	1	17	0	1	0	0	0	0	0	0	0	12398	696	24	2		2	PPAT	4	57267741	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	11168384	57267741	133886535	242	34839											
EPHA5	2044	broad.mit.edu	37	chr4	66356169	66356169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcggacactccattcactGcctcaatctcaaaggtatag	7	12	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66356169	T	T	66356169	3	4	17	1	0	0	0	0	1	0	0	0	5212	1319	46	3	1841	3	EPHA5	4	66356169	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	9088428	66356169	124798107	243	34840											
ADAMTS3	9508	broad.mit.edu	37	chr4	73149142	73149142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcatatgcatttggacctCccactgaagagatgctactc	8	12	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73149142	A	A	73149142	3	1	17	1	0	0	0	0	1	0	0	0	267	855	30	3	292	3	ADAMTS3	4	73149142	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	6792973	73149142	118005134	244	34841											
THAP6	152815	broad.mit.edu	37	chr4	76452177	76452177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgtttttaggaacataGctacagtgtaatggacagtc	9	5	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76452177	T	T	76452177	3	4	17	1	0	0	0	0	1	0	0	0	15971	971	34	3	436	3	THAP6	4	76452177	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3303035	76452177	114702099	245	34842											
ANKRD56	345079	broad.mit.edu	37	chr4	77818208	77818208	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggaagccctgcttgtcgcAgcctcgacggtggcgggagg	19	11	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77818208	G	G	77818208	2	3	17	1	0	0	0	0	0	0	0	1	682	175	7	5		5	ANKRD56	4	77818208	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	1366031	77818208	113336068	246	34843											
FGF5	2250	broad.mit.edu	37	chr4	81188269	81188269	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctactgcagagtgggcatCggtttccatctgcagatcta	10	11	3	2	rs148557449		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81188269	A	A	81188269	2	1	17	1	0	0	0	0	0	0	0	1	5912	874	31	3		3	FGF5	4	81188269	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	3370061	81188269	109966007	247	34844											
ARHGAP24	83478	broad.mit.edu	37	chr4	86915594	86915594	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgttttagcttctattgcTattatcatagttaagaatat	6	4	2	1	rs75349882	byFrequency;by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86915594	A	A	86915594	1	1	17	0	1	0	0	0	0	0	0	0	875	1537	53	5		5	ARHGAP24	4	86915594	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	5727325	86915594	104238682	248	34845											
PKD2	5311	broad.mit.edu	37	chr4	88996742	88996742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaggcacgccagtgggaCtaaatggtcaacctcgcccc	11	13	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88996742	A	A	88996742	3	1	17	1	0	0	0	0	1	0	0	0	12061	564	20	3	2861	3	PKD2	4	88996742	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2081148	88996742	102157534	249	34846											
PDLIM5	10611	broad.mit.edu	37	chr4	95503804	95503804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctgttgttcatcttccGgggaacatcaatgtcttctc	8	10	6	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95503804	T	T	95503804	1	4	17	0	1	0	0	0	0	0	0	0	11777	1131	39	1		1	PDLIM5	4	95503804	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	6507062	95503804	95650472	250	34847											
TSPAN5	10098	broad.mit.edu	37	chr4	99403430	99403430	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtaattacattggattgTtacacatctccaaagcagat	6	7	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99403430	C	C	99403430	1	2	17	0	1	0	0	0	0	0	0	0	16775	1740	60	5		5	TSPAN5	4	99403430	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	3899626	99403430	91750846	251	34848											
NHEDC2	133308	broad.mit.edu	37	chr4	103964603	103964603	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttacacacaagtttgtcCtttaggagaaaaaaattcat	5	8	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103964603	T	T	103964603	5	4	17	1	0	0	0	0	0	0	1	0	10496	695	24	4	633	4	NHEDC2	4	103964603	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	4561173	103964603	87189673	252	34849											
COL25A1	84570	broad.mit.edu	37	chr4	109971367	109971367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggataatttttttagtgtaGtttaattctttttcctggtt	7	3	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109971367	T	T	109971367	1	4	17	0	1	0	0	0	0	0	0	0	3716	1044	36	3		3	COL25A1	4	109971367	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	6006764	109971367	81182909	253	34850											
SEC24B	10427	broad.mit.edu	37	chr4	110445850	110445850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagggaatctgcaccaaatGcctagacatttagaaaactc	7	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110445850	T	T	110445850	1	4	17	0	1	0	0	0	0	0	0	0	14108	1334	46	3		3	SEC24B	4	110445850	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	474483	110445850	80708426	254	34851											
SYNPO2	171024	broad.mit.edu	37	chr4	119951485	119951485	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaggtaggtggaacgccaAgcagagaacaagatgctgcc	13	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119951485	T	T	119951485	3	4	17	1	0	0	0	0	1	0	0	0	15576	72	3	5	1569	5	SYNPO2	4	119951485	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	9505635	119951485	71202791	255	34852											
QRFPR	84109	broad.mit.edu	37	chr4	122250567	122250567	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctctgtctgttcacacaAtttgacttcaatgttgccat	5	12	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122250567	G	G	122250567	2	3	17	1	0	0	0	0	0	0	0	1	12986	98	4	5		5	QRFPR	4	122250567	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	2299082	122250567	68903709	256	34853											
UCP1	7350	broad.mit.edu	37	chr4	141483349	141483349	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaagatcatatcttacccCttgaagaaagccgttggtcc	7	12	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141483349	T	T	141483349	2	4	17	1	0	0	0	0	0	0	0	1	17056	680	24	4		4	UCP1	4	141483349	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	19232782	141483349	49670927	257	34854											
IL15	3600	broad.mit.edu	37	chr4	142653921	142653921	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatctggatgcaaagaatgtGaggaactggaggaaaaaaat	12	3	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142653921	C	C	142653921	3	2	17	1	0	0	0	0	1	0	0	0	7701	1291	45	4	431	4	IL15	4	142653921	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1170572	142653921	48500355	258	34855											
INPP4B	8821	broad.mit.edu	37	chr4	143114199	143114199	+	Intron	DEL	G	-	-													gacttccccaaaggggagatGttattaatggaatctgtgct							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143114199	-	-	143114199	6	5	17	0	1	1	0	1	0	0	0	0	7823	1392	48	0		0	INPP4B	4	143114199	Intron	DEL	G	TCGA-05-4417-01A-22D-1855-08	460278	143114199	48040077	259	34856											
SMARCA5	8467	broad.mit.edu	37	chr4	144465746	144465746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattatatacataatattgaGcaaagtatcatagtctccac	4	7	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144465746	T	T	144465746	1	4	17	0	1	0	0	0	0	0	0	0	14885	986	34	3		3	SMARCA5	4	144465746	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1351547	144465746	46688530	260	34857											
FGG	2266	broad.mit.edu	37	chr4	155530765	155530766	+	Intron	DNP	GG	TT	TT													ggaatttattaaatacacatGgtggggaaaaaattaccttc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	155530766	TT	TT	155530765	1	4	17	0	1	0	0	0	0	0	0	0	5927	1363	47	2		2	FGG	4	155530765	Intron	DNP	GG	TCGA-05-4417-01A-22D-1855-08	11065019	155530765	35623511	261	34858											
TDO2	6999	broad.mit.edu	37	chr4	156831356	156831356	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaagacacttctggaatTagtggaggtatggattcata	12	4	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156831356	A	A	156831356	4	1	17	1	0	0	0	0	0	1	0	0	15849	1764	61	5	633	5	TDO2	4	156831356	Nonsense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	1300591	156831356	34322920	262	34859											
NPY5R	4889	broad.mit.edu	37	chr4	164271731	164271731	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttcacactgacgtctgtCttgctggatcagtggatgtt	10	10	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164271731	A	A	164271731	2	1	17	1	0	0	0	0	0	0	0	1	10705	900	32	3		3	NPY5R	4	164271731	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	7440375	164271731	26882545	263	34860											
MARCH1	55016	broad.mit.edu	37	chr4	164466680	164466680	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcctaacctggggaaataActtccctatccacctctgag	8	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164466680	T	T	164466680	1	4	17	0	1	0	0	0	0	0	0	0	9390	58	2	5		5	MARCH1	4	164466680	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	194949	164466680	26687596	264	34861											
PALLD	23022	broad.mit.edu	37	chr4	169589278	169589278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccttcacttctgctttatTgttttaaacatcaccatttc	3	11	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169589278	C	C	169589278	1	2	17	0	1	0	0	0	0	0	0	0	11501	1827	63	5		5	PALLD	4	169589278	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	5122598	169589278	21564998	265	34862											
MTNR1A	4543	broad.mit.edu	37	chr4	187455689	187455689	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaccaggtctgccaccgcTaagctcaccacaaagatgtt	7	15	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187455689	G	G	187455689	3	3	17	1	0	0	0	0	1	0	0	0	10045	1519	53	5	849	5	MTNR1A	4	187455689	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	17866411	187455689	3698587	266	34863											
TRIML2	205860	broad.mit.edu	37	chr4	189018444	189018444	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatcttactggactctgaTtctcacccaattgtatccaa	4	12	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189018444	G	G	189018444	1	3	17	0	1	0	0	0	0	0	0	0	16676	1508	52	5		5	TRIML2	4	189018444	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	1562755	189018444	2135832	267	34864											
TERT	7015	broad.mit.edu	37	chr5	1278900	1278900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatggtgtcgtacgcgccCgtcacatccacctgtgtgag	14	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1278900	A	A	1278900	2	1	17	1	0	0	0	0	0	0	0	1	15886	639	23	1		1	TERT	5	1278900	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08		1278900	179636360	268	34865											
PAPD7	11044	broad.mit.edu	37	chr5	6738755	6738755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtagtgtgactgcttgGtttgtggtatacattttaag	12	3	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6738755	T	T	6738755	1	4	17	0	1	0	0	0	0	0	0	0	11520	1276	44	3		3	PAPD7	5	6738755	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5459855	6738755	174176505	269	34866											
PRDM9	56979	broad.mit.edu	37	chr5	23522959	23522959	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgagggccgaattacagaaGacgaagaggcagccaacaat	12	8	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23522959	T	T	23522959	3	4	17	1	0	0	0	0	1	0	0	0	12569	942	33	3	873	3	PRDM9	5	23522959	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	16784204	23522959	157392301	270	34867											
SPEF2	79925	broad.mit.edu	37	chr5	35628757	35628757	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agactggagtgcagtagcgtGatcatagctcacagcaacct	11	10	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35628757	T	T	35628757	1	4	17	0	1	0	0	0	0	0	0	0	15153	1305	45	3		3	SPEF2	5	35628757	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	12105798	35628757	145286503	271	34868											
CAPSL	133690	broad.mit.edu	37	chr5	35904806	35904806	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcactctgtcaatgggCgcccaccttgtgcacctgta	8	15	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35904806	T	T	35904806	1	4	17	0	1	0	0	0	0	0	0	0	2665	783	27	4		4	CAPSL	5	35904806	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	276049	35904806	145010454	272	34869											
C5orf42	65250	broad.mit.edu	37	chr5	37183193	37183193	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtttgatgatctctggattAgacatttctctctagtgtca	9	7	4	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37183193	G	G	37183193	3	3	17	1	0	0	0	0	1	0	0	0	2324	420	15	5	4611	5	C5orf42	5	37183193	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	1278387	37183193	143732067	273	34870											
HEATR7B2	133558	broad.mit.edu	37	chr5	41009403	41009403	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaattgcctcaaccctggcGatgtcatcttctaactcagt	7	12	5	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41009403	C	C	41009403	3	2	17	1	0	0	0	0	1	0	0	0	7102	1048	37	4	1402	4	HEATR7B2	5	41009403	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3826210	41009403	139905857	274	34871											
HEATR7B2	133558	broad.mit.edu	37	chr5	41019088	41019088	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcctcaagaatgttaaggTggtcttgtagtgagagctga	12	6	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41019088	A	A	41019088	3	1	17	1	0	0	0	0	1	0	0	0	7102	1696	59	5	2355	5	HEATR7B2	5	41019088	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	9685	41019088	139896172	275	34872											
SFRS12	140890	broad.mit.edu	37	chr5	65458163	65458163	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttttctcttcttaaaaaTcatatcagtggatacagtaa	4	7	5	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65458163	C	C	65458163	1	2	17	0	1	0	0	0	0	0	0	0	14280	1450	50	5		5	SFRS12	5	65458163	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	24439075	65458163	115457097	276	34873											
THBS4	7060	broad.mit.edu	37	chr5	79368070	79368070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagtcagtgacattccCctgactcaaggtagcatttc	9	10	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79368070	A	A	79368070	1	1	17	0	1	0	0	0	0	0	0	0	15979	638	22	2		2	THBS4	5	79368070	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	13909907	79368070	101547190	277	34874											
MSH3	4437	broad.mit.edu	37	chr5	80071675	80071675	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccacattcttgaaattaaAagcaattctttttacttatt	3	7	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80071675	C	C	80071675	1	2	17	0	1	0	0	0	0	0	0	0	9965	29	1	5		5	MSH3	5	80071675	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	703605	80071675	100843585	278	34875											
FER	2241	broad.mit.edu	37	chr5	108282003	108282003	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactaatgaatatatatatAtgtgtgtgtgtgtgtatata	9	2	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108282003	G	G	108282003	1	3	17	0	1	0	0	0	0	0	0	0	5870	464	16	5		5	FER	5	108282003	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	28210328	108282003	72633257	279	34876											
TRIM36	55521	broad.mit.edu	37	chr5	114482933	114482933	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtcacacataatggctgTggctgccctagctgcttgac	11	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114482933	C	C	114482933	3	2	17	1	0	0	0	0	1	0	0	0	16634	1696	59	5	1761	5	TRIM36	5	114482933	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	6200930	114482933	66432327	280	34877											
ZNF608	57507	broad.mit.edu	37	chr5	123980214	123980214	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaacgatacaggaaggctGggcacaccactctctttatt	9	10	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123980214	A	A	123980214	2	1	17	1	0	0	0	0	0	0	0	1	18161	1335	47	4		4	ZNF608	5	123980214	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	9497281	123980214	56935046	281	34878											
SLC27A6	28965	broad.mit.edu	37	chr5	128302299	128302299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgggcccagagccctaGtggtgggcgcaggtagagta	17	10	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128302299	T	T	128302299	3	4	17	1	0	0	0	0	1	0	0	0	14644	1029	36	3	471	3	SLC27A6	5	128302299	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	4322085	128302299	52612961	282	34879											
ACSL6	23305	broad.mit.edu	37	chr5	131302125	131302125	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccggcagccattttccgAtgtctccagtgtgaagccag	10	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131302125	T	T	131302125	3	4	17	1	0	0	0	0	1	0	0	0	181	333	12	5	491	5	ACSL6	5	131302125	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	2999826	131302125	49613135	283	34880											
P4HA2	8974	broad.mit.edu	37	chr5	131546279	131546279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattagggaaagagattccCacttcaaggaaagcctgagc	12	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131546279	A	A	131546279	1	1	17	0	1	0	0	0	0	0	0	0	11451	609	21	2		2	P4HA2	5	131546279	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	244154	131546279	49368981	284	34881											
FAM53C	51307	broad.mit.edu	37	chr5	137677034	137677034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggagaatcatgataaccCtgatcactgagcagctacag	11	9	2	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137677034	A	A	137677034	3	1	17	1	0	0	0	0	1	0	0	0	5632	680	24	2	12	2	FAM53C	5	137677034	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	6130755	137677034	43238226	285	34882											
PCDHA5	56143	broad.mit.edu	37	chr5	140203112	140203112	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctggtgccgaggtcagtGggtgcgggccacgtggtggc	21	9	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140203112	A	A	140203112	2	1	17	1	0	0	0	0	0	0	0	1	11621	1335	47	4		4	PCDHA5	5	140203112	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	2526078	140203112	40712148	286	34883											
PCDHA9	9752	broad.mit.edu	37	chr5	140228509	140228509	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaagaatctgttcatcgcGgaatccaggccgcttgactc	9	12	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140228509	A	A	140228509	2	1	17	1	0	0	0	0	0	0	0	1	11625	1103	39	4		4	PCDHA9	5	140228509	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	25397	140228509	40686751	287	34884											
PCDHB4	56131	broad.mit.edu	37	chr5	140503357	140503357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggtggtggcggtggacGgcgactcgggccagaacgcc	18	12	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140503357	T	T	140503357	3	4	17	1	0	0	0	0	1	0	0	0	11638	1116	39	1	1779	1	PCDHB4	5	140503357	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	274848	140503357	40411903	288	34885											
PCDHB6	56130	broad.mit.edu	37	chr5	140532100	140532100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtacaaggtgtgtctgacGggaggctcagaaacaaatga	13	7	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140532100	T	T	140532100	2	4	17	1	0	0	0	0	0	0	0	1	11640	1103	39	1		1	PCDHB6	5	140532100	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	28743	140532100	40383160	289	34886											
PCDHB9	56127	broad.mit.edu	37	chr5	140567370	140567370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactagaaagagcacaggatCcagatgaaggtcataacagt	11	7	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140567370	A	A	140567370	3	1	17	1	0	0	0	0	1	0	0	0	11643	855	30	3	480	3	PCDHB9	5	140567370	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	35270	140567370	40347890	290	34887											
PCDHB9	56127	broad.mit.edu	37	chr5	140569352	140569352	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggctaactaaattgtgtaTgcccaccacaaagaaggtac	8	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140569352	A	A	140569352	1	1	17	0	1	0	0	0	0	0	0	0	11643	1479	51	5		5	PCDHB9	5	140569352	3'UTR	SNP	T	TCGA-05-4417-01A-22D-1855-08	1982	140569352	40345908	291	34888											
PCDHB9	56127	broad.mit.edu	37	chr5	140569385	140569385	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaggtactattttttgtttGattcatcttcaactttgcgt	7	6	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140569385	C	C	140569385	1	2	17	0	1	0	0	0	0	0	0	0	11643	1305	45	4		4	PCDHB9	5	140569385	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	33	140569385	40345875	292	34889											
PCDHB10	56126	broad.mit.edu	37	chr5	140573565	140573565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgccacagacagagactcGggcaccaacgcccaggtcac	11	16	1	2	rs17844567	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140573565	T	T	140573565	2	4	17	1	0	0	0	0	0	0	0	1	11629	1103	39	1		1	PCDHB10	5	140573565	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	4180	140573565	40341695	293	34890											
PCDHB13	56123	broad.mit.edu	37	chr5	140594394	140594394	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcaggtctacatcgaagtCctggatgtcaacgataatgc	10	10	3	0	rs3822336		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140594394	A	A	140594394	2	1	17	1	0	0	0	0	0	0	0	1	11632	842	30	3		3	PCDHB13	5	140594394	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	20829	140594394	40320866	294	34891											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730539	140730539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccaatgataatgctcccGtgtttagccaggaggtatac	10	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140730539	A	A	140730539	3	1	17	1	0	0	0	0	1	0	0	0	11656	1145	40	4	714	4	PCDHGB1	5	140730539	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	136145	140730539	40184721	295	34892											
PCDHGA6	56109	broad.mit.edu	37	chr5	140755906	140755906	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcgggctttcctgcagacCtattcccacgaggtctcact	9	14	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140755906	A	A	140755906	2	1	17	1	0	0	0	0	0	0	0	1	11652	668	24	2		2	PCDHGA6	5	140755906	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	25367	140755906	40159354	296	34893											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774460	140774460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagccttacactctatctcGtggtggcagtggctgccatc	11	13	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140774460	T	T	140774460	3	4	17	1	0	0	0	0	1	0	0	0	11654	1145	40	3	2082	3	PCDHGA8	5	140774460	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	18554	140774460	40140800	297	34894											
PCDH1	5097	broad.mit.edu	37	chr5	141248409	141248409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctcctgggcctcaggccCagcctgcagctcataggatg	12	14	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141248409	A	A	141248409	3	1	17	1	0	0	0	0	1	0	0	0	11600	594	21	2	3185	2	PCDH1	5	141248409	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	473949	141248409	39666851	298	34895											
FBXO38	81545	broad.mit.edu	37	chr5	147795533	147795533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgatatcaacctagtacGgtgccatgctttgaagctgg	12	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147795533	T	T	147795533	3	4	17	1	0	0	0	0	1	0	0	0	5803	1116	39	1	1345	1	FBXO38	5	147795533	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	6547124	147795533	33119727	299	34896											
FAT2	2196	broad.mit.edu	37	chr5	150922135	150922135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatccaaccactctcactGtcaatggcaaagagctcatg	8	12	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150922135	T	T	150922135	3	4	17	1	0	0	0	0	1	0	0	0	5747	1368	48	3	4556	3	FAT2	5	150922135	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3126602	150922135	29993125	300	34897											
KIF4B	285643	broad.mit.edu	37	chr5	154394251	154394251	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgtaatcagtgctcttGgagatgacaaaaagggtagc	12	5	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154394251	T	T	154394251	4	4	17	1	0	0	0	0	0	1	0	0	8374	1349	47	2	834	2	KIF4B	5	154394251	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3472116	154394251	26521009	301	34898											
TTC1	7265	broad.mit.edu	37	chr5	159476456	159476456	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgattgatgaaggaatctGatatagccaaagatatgtag	11	3	1	5			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159476456	T	T	159476456	1	4	17	0	1	0	0	0	0	0	0	0	16804	1305	45	3		3	TTC1	5	159476456	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5082205	159476456	21438804	302	34899											
GABRA1	2554	broad.mit.edu	37	chr5	161292724	161292724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccaatttcctgcttcaaCagagcgtgtaaccgaagtga	9	12	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161292724	A	A	161292724	1	1	17	0	1	0	0	0	0	0	0	0	6220	493	17	3		3	GABRA1	5	161292724	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1816268	161292724	19622536	303	34900											
ODZ2	57451	broad.mit.edu	37	chr5	167182132	167182132	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccagatcatctcttatggaGacccggcagtacctcacctc	8	15	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167182132	T	T	167182132	1	4	17	0	1	0	0	0	0	0	0	0	10930	957	33	3		3	ODZ2	5	167182132	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5889408	167182132	13733128	304	34901											
DOCK2	1794	broad.mit.edu	37	chr5	169504856	169504856	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaggtcagtccctgcacCccaaggagccccccacaccc	9	19	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169504856	A	A	169504856	1	1	17	0	1	0	0	0	0	0	0	0	4727	638	22	2		2	DOCK2	5	169504856	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2322724	169504856	11410404	305	34902											
GABRP	2568	broad.mit.edu	37	chr5	170236815	170236815	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgccgtgtgctgatctGtagacatgggctggacctgg	16	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170236815	C	C	170236815	1	2	17	0	1	0	0	0	0	0	0	0	6234	1392	48	4		4	GABRP	5	170236815	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	731959	170236815	10678445	306	34903											
NPM1	4869	broad.mit.edu	37	chr5	170819773	170819773	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatgtgaaactcttaagtAtatctggaaagcggtctgcc	11	7	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170819773	G	G	170819773	3	3	17	1	0	0	0	0	1	0	0	0	10682	449	16	5	430	5	NPM1	5	170819773	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	582958	170819773	10095487	307	34904											
C5orf25	375484	broad.mit.edu	37	chr5	175740689	175740689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttctcattctttttccCacagggacaaactctgcctg	6	13	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175740689	A	A	175740689	1	1	17	0	1	0	0	0	0	0	0	0	2311	609	21	2		2	C5orf25	5	175740689	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	4920916	175740689	5174571	308	34905											
LMAN2	10960	broad.mit.edu	37	chr5	176765495	176765495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaccagcccacctggcaCgaggcggtcccgggtgtacc	13	16	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176765495	A	A	176765495	3	1	17	1	0	0	0	0	1	0	0	0	8912	536	19	3	667	3	LMAN2	5	176765495	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1024806	176765495	4149765	309	34906											
GRK6	2870	broad.mit.edu	37	chr5	176868863	176868863	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtttacagttttgcacaGtgatcttccccattgtccac	7	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176868863	T	T	176868863	1	4	17	0	1	0	0	0	0	0	0	0	6859	1044	36	3		3	GRK6	5	176868863	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	103368	176868863	4046397	310	34907											
FAM153A	285596	broad.mit.edu	37	chr5	177163640	177163640	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaacactatgaggatcAgaccaggctgtgtcctgtgt	10	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177163640	T	T	177163640	1	4	17	0	1	0	0	0	0	0	0	0	5506	203	7	5		5	FAM153A	5	177163640	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	294777	177163640	3751620	311	34908											
FLT4	2324	broad.mit.edu	37	chr5	180052946	180052946	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaggcaggggcaccccGtaggccgtgcaggtgagggc	19	11	0	2	rs3736062	byFrequency;by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180052946	C	C	180052946	4	2	17	1	0	0	0	0	0	1	0	0	6002	1140	40	4	2839	4	FLT4	5	180052946	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2889306	180052946	862314	312	34909											
SERPINB9	5272	broad.mit.edu	37	chr6	2895552	2895552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaggatataagaggcGggaaggaggaataggaagag	20	1	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2895552	T	T	2895552	1	4	17	0	1	0	0	0	0	0	0	0	14221	1131	39	1		1	SERPINB9	6	2895552	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08		2895552	168219515	313	34910											
DSP	1832	broad.mit.edu	37	chr6	7584149	7584149	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatcagacaacctgtgacCgtcactgagctagtagattc	10	10	2	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7584149	A	A	7584149	2	1	17	1	0	0	0	0	0	0	0	1	4821	639	23	1		1	DSP	6	7584149	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	4688597	7584149	163530918	314	34911											
DSP	1832	broad.mit.edu	37	chr6	7585433	7585433	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcgttgacagcatcacGggtcagaggcttctggaggc	15	10	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7585433	T	T	7585433	2	4	17	1	0	0	0	0	0	0	0	1	4821	1103	39	1		1	DSP	6	7585433	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1284	7585433	163529634	315	34912											
TFAP2A	7020	broad.mit.edu	37	chr6	10415182	10415183	+	Missense_Mutation	DNP	CC	AG	AG													cgtcgcgcttacctcgcagtCctcgtacttgatattatccg							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	10415183	AG	AG	10415182	3	1	17	1	0	0	0	0	1	0	0	0	15910	855	30	3	1335	3	TFAP2A	6	10415182	Missense_Mutation	DNP	CC	TCGA-05-4417-01A-22D-1855-08	2829749	10415182	160699885	316	34913											
TMEM14B	81853	broad.mit.edu	37	chr6	10749748	10749748	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatagtacctgtgggcacatAggacctgtggggaatgatta	14	6	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10749748	T	T	10749748	1	4	17	0	1	0	0	0	0	0	0	0	16187	435	15	5		5	TMEM14B	6	10749748	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	334566	10749748	160365319	317	34914											
MBOAT1	154141	broad.mit.edu	37	chr6	20152973	20152973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaagcagcaaacagagCaacaagctggcataccacaa	8	12	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20152973	A	A	20152973	3	1	17	1	0	0	0	0	1	0	0	0	9449	710	25	3	1408	3	MBOAT1	6	20152973	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	9403225	20152973	150962094	318	34915											
TRIM38	10475	broad.mit.edu	37	chr6	25973185	25973185	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactagggtaactctctttActtcttcgggtaaagcaaag	9	8	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25973185	T	T	25973185	1	4	17	0	1	0	0	0	0	0	0	0	16636	406	14	5		5	TRIM38	6	25973185	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	5820212	25973185	145141882	319	34916											
BTN2A1	11120	broad.mit.edu	37	chr6	26465284	26465284	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagccagcatcactttctccAtctgagttttctgagggaga	10	10	4	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26465284	G	G	26465284	1	3	17	0	1	0	0	0	0	0	0	0	1570	232	8	5		5	BTN2A1	6	26465284	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	492099	26465284	144649783	320	34917											
OR2B6	26212	broad.mit.edu	37	chr6	27925686	27925686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcatatgcttttattgtccGagcagtattgaggatacagt	9	6	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27925686	T	T	27925686	3	4	17	1	0	0	0	0	1	0	0	0	11085	1058	37	3	670	3	OR2B6	6	27925686	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1460402	27925686	143189381	321	34918											
LY6G6F	259215	broad.mit.edu	37	chr6	31675569	31675569	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttggtgctcaaaggtgaGtgggggcatgcagaccaggg	18	7	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31675569	A	A	31675569	1	1	17	0	1	0	0	0	0	0	0	0	9184	1044	36	4		4	LY6G6F	6	31675569	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3749883	31675569	139439498	322	34919											
FKBPL	63943	broad.mit.edu	37	chr6	32096599	32096599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttcctcctgggctgccCggtttttgggatctatcgcc	11	14	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32096599	A	A	32096599	3	1	17	1	0	0	0	0	1	0	0	0	5973	652	23	1	94	1	FKBPL	6	32096599	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	421030	32096599	139018468	323	34920											
PPT2	9374	broad.mit.edu	37	chr6	32130370	32130370	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggtttctatgatgcaaatGagaccgtcctggagatggag	13	6	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32130370	T	T	32130370	4	4	17	1	0	0	0	0	0	1	0	0	12513	1291	45	3	784	3	PPT2	6	32130370	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	33771	32130370	138984697	324	34921											
TAP2	6891	broad.mit.edu	37	chr6	32803144	32803144	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttcagctcccctaagaaGgacagagcaggtgaggaaaa	13	8	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32803144	A	A	32803144	1	1	17	0	1	0	0	0	0	0	0	0	15670	1015	35	4		4	TAP2	6	32803144	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	672774	32803144	138311923	325	34922											
BAK1	578	broad.mit.edu	37	chr6	33543486	33543486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagacccccgaggcctccCcagctcccaggacctgcaca	9	20	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33543486	A	A	33543486	1	1	17	0	1	0	0	0	0	0	0	0	1310	638	22	2		2	BAK1	6	33543486	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	740342	33543486	137571581	326	34923											
PPARD	5467	broad.mit.edu	37	chr6	35393636	35393636	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctcatgaacgttccacGggtggaggctatccaggaca	13	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35393636	T	T	35393636	3	4	17	1	0	0	0	0	1	0	0	0	12394	1116	39	1	1153	1	PPARD	6	35393636	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1850150	35393636	135721431	327	34924											
CLPS	1208	broad.mit.edu	37	chr6	35762936	35762936	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtctcactgcttggagCgtccagcgtcatggcagatg	14	11	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35762936	T	T	35762936	3	4	17	1	0	0	0	0	1	0	0	0	3585	768	27	4	16	4	CLPS	6	35762936	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	369300	35762936	135352131	328	34925											
KIF6	221458	broad.mit.edu	37	chr6	39580974	39580974	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtttattacctctgcaatCattcggttggtgtctcctaa	7	9	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39580974	T	T	39580974	3	4	17	1	0	0	0	0	1	0	0	0	8378	826	29	4	1886	4	KIF6	6	39580974	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3818038	39580974	131534093	329	34926											
UBR2	23304	broad.mit.edu	37	chr6	42629984	42629984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacacacactagtagctgtGggcacattatgcatgcccat	9	11	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42629984	T	T	42629984	3	4	17	1	0	0	0	0	1	0	0	0	17028	1348	47	2	3773	2	UBR2	6	42629984	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3049010	42629984	128485083	330	34927											
PPP2R5D	5528	broad.mit.edu	37	chr6	42977129	42977129	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgataagtgacaatgctgccCgagtcctccccatcatgttc	8	13	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42977129	A	A	42977129	2	1	17	1	0	0	0	0	0	0	0	1	12496	644	23	1		1	PPP2R5D	6	42977129	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	347145	42977129	128137938	331	34928											
CUL9	23113	broad.mit.edu	37	chr6	43164320	43164320	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccggccttctatgcttgCtttgctgcttccattgcatt	8	13	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43164320	T	T	43164320	1	4	17	0	1	0	0	0	0	0	0	0	4094	812	28	4		4	CUL9	6	43164320	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	187191	43164320	127950747	332	34929											
GSTA2	2939	broad.mit.edu	37	chr6	52630236	52630236	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagtgaagccaaggacTgacaccaccattaacacaac	7	13	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52630236	C	C	52630236	1	2	17	0	1	0	0	0	0	0	0	0	6897	1595	55	5		5	GSTA2	6	52630236	5'Flank	SNP	T	TCGA-05-4417-01A-22D-1855-08	9465916	52630236	118484831	333	34930											
GFRAL	389400	broad.mit.edu	37	chr6	55196632	55196632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggagagtaatggaagatGcctgcaatgattcaggtaaa	12	5	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55196632	T	T	55196632	3	4	17	1	0	0	0	0	1	0	0	0	6415	1319	46	3	148	3	GFRAL	6	55196632	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2566396	55196632	115918435	334	34931											
BAI3	577	broad.mit.edu	37	chr6	69772946	69772946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtaagtaccatccactgGgcactgacttgcttatggaa	9	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69772946	T	T	69772946	1	4	17	0	1	0	0	0	0	0	0	0	1305	1247	43	2		2	BAI3	6	69772946	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	14576314	69772946	101342121	335	34932											
COL9A1	1297	broad.mit.edu	37	chr6	70991127	70991127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctggaactccaggggggCccggaggcccgggaggaccc	18	14	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70991127	A	A	70991127	3	1	17	1	0	0	0	0	1	0	0	0	3739	739	26	3	2047	3	COL9A1	6	70991127	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1218181	70991127	100123940	336	34933											
SLC17A5	26503	broad.mit.edu	37	chr6	74351499	74351499	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaacagggtgaggacaGcagtgccaaggatcccaaat	14	8	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74351499	A	A	74351499	3	1	17	1	0	0	0	0	1	0	0	0	14533	971	34	4	1083	4	SLC17A5	6	74351499	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3360372	74351499	96763568	337	34934											
COL12A1	1303	broad.mit.edu	37	chr6	75898156	75898156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgatctcattctgaatatCcacaattgcatcaaagttgg	7	8	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75898156	A	A	75898156	3	1	17	1	0	0	0	0	1	0	0	0	3701	855	30	3	8508	3	COL12A1	6	75898156	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1546657	75898156	95216911	338	34935											
ELOVL4	6785	broad.mit.edu	37	chr6	80626442	80626442	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggctgtttttccagctttTggtttcttaggctctttgta	9	7	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80626442	C	C	80626442	2	2	17	1	0	0	0	0	0	0	0	1	5118	1799	63	5		5	ELOVL4	6	80626442	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	4728286	80626442	90488625	339	34936											
MDN1	23195	broad.mit.edu	37	chr6	90398394	90398394	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgtgcttctggaacattGggatgctggtagaagtcata	13	7	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90398394	T	T	90398394	2	4	17	1	0	0	0	0	0	0	0	1	9508	1335	47	2		2	MDN1	6	90398394	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	9771952	90398394	80716673	340	34937											
GJA10	84694	broad.mit.edu	37	chr6	90604135	90604135	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctatatattaccaccatGggtgctattaacctcagtgt	7	9	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90604135	T	T	90604135	1	4	17	0	1	0	0	0	0	0	0	0	6465	1363	47	2		2	GJA10	6	90604135	5'Flank	SNP	G	TCGA-05-4417-01A-22D-1855-08	205741	90604135	80510932	341	34938											
GPRC6A	222545	broad.mit.edu	37	chr6	117149993	117149993	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttactcacccaacacactCctggatttgtggtcgtctgg	8	13	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117149993	A	A	117149993	4	1	17	1	0	0	0	0	0	1	0	0	6794	864	30	3	2620	3	GPRC6A	6	117149993	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	26545858	117149993	53965074	342	34939											
ROS1	6098	broad.mit.edu	37	chr6	117718356	117718356	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaataagatggaaaaaagtCttgtttttttttttgaaaac	6	2	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117718356	A	A	117718356	1	1	17	0	1	0	0	0	0	0	0	0	13642	928	32	3		3	ROS1	6	117718356	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	568363	117718356	53396711	343	34940											
C6orf170	221322	broad.mit.edu	37	chr6	121544338	121544338	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttactaccaatctcaaaTagtagcatttataacagaga	4	7	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121544338	A	A	121544338	1	1	17	0	1	0	0	0	0	0	0	0	2367	1421	49	5		5	C6orf170	6	121544338	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	3825982	121544338	49570729	344	34941											
TRDN	10345	broad.mit.edu	37	chr6	123545116	123545116	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaataagcctaccatgtaAatgttgcctagaaaagctta	6	7	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123545116	C	C	123545116	1	2	17	0	1	0	0	0	0	0	0	0	16592	29	1	5		5	TRDN	6	123545116	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	2000778	123545116	47569951	345	34942											
LAMA2	3908	broad.mit.edu	37	chr6	129371197	129371197	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctgtgaggaacccgcagTgtcgaatctgcaatcaaaac	10	11	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129371197	G	G	129371197	3	3	17	1	0	0	0	0	1	0	0	0	8678	1696	59	5	253	5	LAMA2	6	129371197	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	5826081	129371197	41743870	346	34943											
SAMD3	154075	broad.mit.edu	37	chr6	130530639	130530640	+	Splice_Site	DNP	CC	AA	AA													tcttaaagttggtacccccaCctctgtttcaatactctttg							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	130530640	AA	AA	130530639	5	1	17	1	0	0	0	0	0	0	1	0	13931	521	18	3	1226	3	SAMD3	6	130530639	Splice_Site	DNP	CC	TCGA-05-4417-01A-22D-1855-08	1159442	130530639	40584428	347	34944											
EPB41L2	2037	broad.mit.edu	37	chr6	131190925	131190925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgactgggctggcttcGggcactgcttcctccctctc	12	14	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131190925	T	T	131190925	2	4	17	1	0	0	0	0	0	0	0	1	5195	1103	39	1		1	EPB41L2	6	131190925	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	660286	131190925	39924142	348	34945											
MOXD1	26002	broad.mit.edu	37	chr6	132636726	132636726	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtatgacaataaagcccatCtttctctgaaatacgttacc	5	10	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132636726	A	A	132636726	1	1	17	0	1	0	0	0	0	0	0	0	9814	928	32	3		3	MOXD1	6	132636726	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1445801	132636726	38478341	349	34946											
TAAR8	83551	broad.mit.edu	37	chr6	132874344	132874344	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgtgttctacacaggtgtCaatgatgatgggctggagga	15	6	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132874344	T	T	132874344	2	4	17	1	0	0	0	0	0	0	0	1	15612	813	29	4		4	TAAR8	6	132874344	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	237618	132874344	38240723	350	34947											
IL20RA	53832	broad.mit.edu	37	chr6	137323275	137323275	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaaatgcgaagcatacCctaaatgtttcacctcctct	4	14	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137323275	T	T	137323275	3	4	17	1	0	0	0	0	1	0	0	0	7738	623	22	4	583	4	IL20RA	6	137323275	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4448931	137323275	33791792	351	34948											
SYNE1	23345	broad.mit.edu	37	chr6	152647561	152647561	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtccagggtggctaccaGgctgtggagctcctccaggt	16	11	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152647561	A	A	152647561	2	1	17	1	0	0	0	0	0	0	0	1	15564	991	35	4		4	SYNE1	6	152647561	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	15324286	152647561	18467506	352	34949											
SYNE1	23345	broad.mit.edu	37	chr6	152784407	152784407	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taataaacccgtgctctaaaAatagcattctctctaaacag	4	10	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152784407	G	G	152784407	1	3	17	0	1	0	0	0	0	0	0	0	15564	29	1	5		5	SYNE1	6	152784407	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	136846	152784407	18330660	353	34950											
SYTL3	94120	broad.mit.edu	37	chr6	159146599	159146599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaatgctctactaaccCtattttgaagcaacagaatc	4	12	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159146599	A	A	159146599	3	1	17	1	0	0	0	0	1	0	0	0	15603	681	24	2	603	2	SYTL3	6	159146599	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	6362192	159146599	11968468	354	34951											
TAGAP	117289	broad.mit.edu	37	chr6	159459136	159459136	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgtaatcaaatgatagcaCattccatacctgaactgtca	5	10	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159459136	T	T	159459136	1	4	17	0	1	0	0	0	0	0	0	0	15656	493	17	4		4	TAGAP	6	159459136	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	312537	159459136	11655931	355	34952											
LPA	4018	broad.mit.edu	37	chr6	160978463	160978463	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttggaactggaacaacaGtgggagtctctaggacacct	12	9	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160978463	A	A	160978463	3	1	17	1	0	0	0	0	1	0	0	0	8990	1029	36	4	1394	4	LPA	6	160978463	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1519327	160978463	10136604	356	34953											
TTYH3	80727	broad.mit.edu	37	chr7	2689476	2689476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagactccaggggacggGttctacccccgagagcttcc	12	14	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2689476	T	T	2689476	1	4	17	0	1	0	0	0	0	0	0	0	16867	1276	44	3		3	TTYH3	7	2689476	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08		2689476	156449187	357	34954											
CARD11	84433	broad.mit.edu	37	chr7	2959089	2959089	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagccactcgtgcctgtcCtggtacatggtgtcacggac	11	14	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2959089	T	T	2959089	2	4	17	1	0	0	0	0	0	0	0	1	2671	680	24	4		4	CARD11	7	2959089	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	269613	2959089	156179574	358	34955											
TNRC18	84629	broad.mit.edu	37	chr7	5352292	5352292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgggtcggctcttggcccCggcctgagccttgggctgca	15	14	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5352292	A	A	5352292	3	1	17	1	0	0	0	0	1	0	0	0	16462	652	23	1	692	1	TNRC18	7	5352292	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2393203	5352292	153786371	359	34956											
C7orf28A	51622	broad.mit.edu	37	chr7	5952629	5952629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaatgattgtgctgaagtGgatctttcttgcatgtgtac	11	5	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5952629	T	T	5952629	1	4	17	0	1	0	0	0	0	0	0	0	2408	1363	47	2		2	C7orf28A	7	5952629	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	600337	5952629	153186034	360	34957											
CHN2	1124	broad.mit.edu	37	chr7	29252146	29252146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccaaaggcaaacaaccCattgctgcagagaataatgc	8	11	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29252146	A	A	29252146	1	1	17	0	1	0	0	0	0	0	0	0	3394	609	21	2		2	CHN2	7	29252146	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	23299517	29252146	129886517	361	34958											
INMT	11185	broad.mit.edu	37	chr7	30793359	30793359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccacaggaggcctccaagGggacacgctgattgacattg	12	12	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30793359	T	T	30793359	3	4	17	1	0	0	0	0	1	0	0	0	7815	1232	43	2	173	2	INMT	7	30793359	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1541213	30793359	128345304	362	34959											
BBS9	27241	broad.mit.edu	37	chr7	33545232	33545232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaagcggcatttctgcCgctacaagaagacactcaag	10	11	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33545232	A	A	33545232	3	1	17	1	0	0	0	0	1	0	0	0	1347	652	23	1	2347	1	BBS9	7	33545232	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2751873	33545232	125593431	363	34960											
AOAH	313	broad.mit.edu	37	chr7	36655990	36655990	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccaaaattacttaccaaaGacatctgcgacgctgtgatc	7	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36655990	A	A	36655990	3	1	17	1	0	0	0	0	1	0	0	0	728	942	33	4	1270	4	AOAH	7	36655990	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3110758	36655990	122482673	364	34961											
GLI3	2737	broad.mit.edu	37	chr7	42088216	42088216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaagggagactcggaagCagcagtggggttccggtgtg	19	7	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42088216	A	A	42088216	3	1	17	1	0	0	0	0	1	0	0	0	6503	710	25	3	4233	3	GLI3	7	42088216	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	5432226	42088216	117050447	365	34962											
GCK	2645	broad.mit.edu	37	chr7	44184946	44184946	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacattcattaccgggcGccctgcacgcagtcgaccct	8	18	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44184946	A	A	44184946	1	1	17	0	1	0	0	0	0	0	0	0	6355	1102	38	4		4	GCK	7	44184946	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2096730	44184946	114953717	366	34963											
ADCY1	107	broad.mit.edu	37	chr7	45719583	45719583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacctggtccaggtatgaGggtggcctctgcctgccctc	12	14	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45719583	T	T	45719583	1	4	17	0	1	0	0	0	0	0	0	0	292	1015	35	2		2	ADCY1	7	45719583	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1534637	45719583	113419080	367	34964											
IGFBP3	3486	broad.mit.edu	37	chr7	45956257	45956257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcttccatttctctacGgcagggaccctggggatcag	12	11	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45956257	T	T	45956257	3	4	17	1	0	0	0	0	1	0	0	0	7650	1116	39	1	243	1	IGFBP3	7	45956257	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	236674	45956257	113182406	368	34965											
SUN3	256979	broad.mit.edu	37	chr7	48026985	48026985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatataaacaagtatacttcGggtgtccccagttgctaaag	9	8	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48026985	T	T	48026985	3	4	17	1	0	0	0	0	1	0	0	0	15511	1116	39	1	61	1	SUN3	7	48026985	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2070728	48026985	111111678	369	34966											
ZNF117	51351	broad.mit.edu	37	chr7	64442493	64442493	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catccataaatgtcaatggtCcctgaaaaacacaaaaacac	4	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64442493	G	G	64442493	1	3	17	0	1	0	0	0	0	0	0	0	17843	869	30	4		4	ZNF117	7	64442493	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	16415508	64442493	94696170	370	34967											
YWHAG	7532	broad.mit.edu	37	chr7	75959381	75959381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccttctctatcttctccCggtacgcacggaccatctca	5	17	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75959381	A	A	75959381	3	1	17	1	0	0	0	0	1	0	0	0	17630	652	23	1	490	1	YWHAG	7	75959381	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	11516888	75959381	83179282	371	34968											
CD36	948	broad.mit.edu	37	chr7	80091794	80091794	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagattacttttaaccctgGctttgtttttcctttagact	5	8	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80091794	C	C	80091794	1	2	17	0	1	0	0	0	0	0	0	0	3037	1218	42	4		4	CD36	7	80091794	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	4132413	80091794	79046869	372	34969											
PCLO	27445	broad.mit.edu	37	chr7	82585225	82585225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttctgtgatgactctgCagaatatttatctgctattg	7	6	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82585225	A	A	82585225	3	1	17	1	0	0	0	0	1	0	0	0	11677	710	25	3	10485	3	PCLO	7	82585225	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2493431	82585225	76553438	373	34970											
SEMA3D	223117	broad.mit.edu	37	chr7	84697506	84697506	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcctgtcattgatcttaCctgtcattactgaagcaaaa	6	10	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84697506	G	G	84697506	5	3	17	1	0	0	0	0	0	0	1	0	14140	521	18	4	1795	4	SEMA3D	7	84697506	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	2112281	84697506	74441157	374	34971											
DYNC1I1	1780	broad.mit.edu	37	chr7	95499231	95499231	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcgtgtcaaaggtcacCcaagtggatttcctgccaag	12	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95499231	T	T	95499231	2	4	17	1	0	0	0	0	0	0	0	1	4882	610	22	4		4	DYNC1I1	7	95499231	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	10801725	95499231	63639432	375	34972											
SPDYE3	441272	broad.mit.edu	37	chr7	99917255	99917255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcttctacttcctgtacGggaagacccactctcacata	6	13	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99917255	T	T	99917255	3	4	17	1	0	0	0	0	1	0	0	0	15148	1116	39	1	1448	1	SPDYE3	7	99917255	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	4418024	99917255	59221408	376	34973											
AGFG2	3268	broad.mit.edu	37	chr7	100153247	100153247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaggccagacaccttccCaaggaggctttgccaacttt	8	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100153247	A	A	100153247	3	1	17	1	0	0	0	0	1	0	0	0	381	595	21	2	788	2	AGFG2	7	100153247	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	235992	100153247	58985416	377	34974											
EPHB4	2050	broad.mit.edu	37	chr7	100403124	100403124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctctgcagtcctcaccCgccattctcccgggccacga	7	19	3	0	rs140332222	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100403124	A	A	100403124	3	1	17	1	0	0	0	0	1	0	0	0	5219	666	23	1	298	1	EPHB4	7	100403124	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	249877	100403124	58735539	378	34975											
ZNHIT1	10467	broad.mit.edu	37	chr7	100866000	100866000	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggatgacccccacgcGggactccctcagctcggcaa	10	17	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100866000	T	T	100866000	2	4	17	1	0	0	0	0	0	0	0	1	18335	1103	39	1		1	ZNHIT1	7	100866000	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	462876	100866000	58272663	379	34976											
SRPK2	6733	broad.mit.edu	37	chr7	104885242	104885242	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacatgatcccggaggcatgTggcttcgccccgtacaagca	12	13	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104885242	A	A	104885242	1	1	17	0	1	0	0	0	0	0	0	0	15278	1711	59	5		5	SRPK2	7	104885242	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	4019242	104885242	54253421	380	34977											
PIK3CG	5294	broad.mit.edu	37	chr7	106513371	106513371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctgctgaaaagtatgacGtcagttcccaaggtacggtg	11	9	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106513371	A	A	106513371	3	1	17	1	0	0	0	0	1	0	0	0	12011	1145	40	4	2285	4	PIK3CG	7	106513371	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1628129	106513371	52625292	381	34978											
PIK3CG	5294	broad.mit.edu	37	chr7	106523403	106523403	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctctgcccttcactcaacAaagacatagcctttcctcct	3	18	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106523403	T	T	106523403	1	4	17	0	1	0	0	0	0	0	0	0	12011	145	5	5		5	PIK3CG	7	106523403	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	10032	106523403	52615260	382	34979											
IMMP2L	83943	broad.mit.edu	37	chr7	111127446	111127446	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcatttgtatttttcaatCttcatggttcttgcacttca	4	8	6	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111127446	A	A	111127446	1	1	17	0	1	0	0	0	0	0	0	0	7787	928	32	3		3	IMMP2L	7	111127446	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	4604043	111127446	48011217	383	34980											
BRAF	673	broad.mit.edu	37	chr7	140534556	140534556	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggaagaagatgtaacGgtatccattgatgcagagct	13	5	0	5			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140534556	T	T	140534556	2	4	17	1	0	0	0	0	0	0	0	1	1505	1103	39	1		1	BRAF	7	140534556	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	29407110	140534556	18604107	384	34981											
TAS2R3	50831	broad.mit.edu	37	chr7	141463882	141463882	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtagaggagtagattaacGagaaaaatatcacatcagtg	11	4	2	3	rs17162473	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141463882	T	T	141463882	1	4	17	0	1	0	0	0	0	0	0	0	15691	1073	37	3		3	TAS2R3	7	141463882	5'Flank	SNP	G	TCGA-05-4417-01A-22D-1855-08	929326	141463882	17674781	385	34982											
CLEC5A	23601	broad.mit.edu	37	chr7	141643750	141643750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacttggggaactgctccCaaaaatctgtgagactaaag	12	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141643750	A	A	141643750	3	1	17	1	0	0	0	0	1	0	0	0	3551	594	21	2	428	2	CLEC5A	7	141643750	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	179868	141643750	17494913	386	34983											
MGAM	8972	broad.mit.edu	37	chr7	141734378	141734378	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggaagagaatgggttattCacttttaatgtcttttgtat	9	3	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141734378	A	A	141734378	1	1	17	0	1	0	0	0	0	0	0	0	9634	841	29	3		3	MGAM	7	141734378	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	90628	141734378	17404285	387	34984											
EPHB6	2051	broad.mit.edu	37	chr7	142563762	142563762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgaggtgcaaggctcaGcactcatgctacactggcgc	13	11	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142563762	T	T	142563762	3	4	17	1	0	0	0	0	1	0	0	0	5220	971	34	3	1168	3	EPHB6	7	142563762	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	829384	142563762	16574901	388	34985											
CLCN1	1180	broad.mit.edu	37	chr7	143043264	143043264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctctccacccctctaCtactgcccctctgtccccag	4	22	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143043264	A	A	143043264	3	1	17	1	0	0	0	0	1	0	0	0	3493	565	20	3	2274	3	CLCN1	7	143043264	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	479502	143043264	16095399	389	34986											
EPHA1	2041	broad.mit.edu	37	chr7	143098538	143098538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggaaactcttgcagtccCgcacggtgaactgcagctcc	11	14	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143098538	A	A	143098538	3	1	17	1	0	0	0	0	1	0	0	0	5207	652	23	1	2683	1	EPHA1	7	143098538	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	55274	143098538	16040125	390	34987											
OR2A5	393046	broad.mit.edu	37	chr7	143747954	143747954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttgggcatgtggttccCttctggccctggtccatgtg	12	12	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143747954	A	A	143747954	3	1	17	1	0	0	0	0	1	0	0	0	11075	681	24	2	462	2	OR2A5	7	143747954	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	649416	143747954	15390709	391	34988											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741026	146741026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggaaacattaactctgacGgtgtggtccggcacgaatta	11	10	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146741026	T	T	146741026	3	4	17	1	0	0	0	0	1	0	0	0	3679	1116	39	1	444	1	CNTNAP2	7	146741026	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2993072	146741026	12397637	392	34989											
EZH2	2146	broad.mit.edu	37	chr7	148511213	148511213	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctttgcagcggcatccCggaaagcggttttgaccttc	12	11	0	1	rs144723981		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148511213	A	A	148511213	2	1	17	1	0	0	0	0	0	0	0	1	5377	639	23	1		1	EZH2	7	148511213	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1770187	148511213	10627450	393	34990											
CDK5	1020	broad.mit.edu	37	chr7	150754239	150754239	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggccttgaacacagttcCgtaggtgcctaggggaagga	14	8	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150754239	A	A	150754239	4	1	17	1	0	0	0	0	0	1	0	0	3172	661	23	1	876	1	CDK5	7	150754239	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2243026	150754239	8384424	394	34991											
PTPRN2	5799	broad.mit.edu	37	chr7	157926489	157926490	+	Missense_Mutation	DNP	CC	AA	AA													tctgctcctccttcgagggcCcaggcatctggttttggagc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	157926490	AA	AA	157926489	3	1	17	1	0	0	0	0	1	0	0	0	12916	623	22	2	1671	2	PTPRN2	7	157926489	Missense_Mutation	DNP	CC	TCGA-05-4417-01A-22D-1855-08	7172250	157926489	1212174	395	34992											
CSMD1	64478	broad.mit.edu	37	chr8	3087424	3087425	+	Intron	DNP	GG	TT	TT													aggtttacaataaaatttcaGgagtctcagagagccagaga							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	3087425	TT	TT	3087424	1	4	17	0	1	0	0	0	0	0	0	0	3978	1015	35	2		2	CSMD1	8	3087424	Intron	DNP	GG	TCGA-05-4417-01A-22D-1855-08		3087424	143276598	396	34993											
SGCZ	137868	broad.mit.edu	37	chr8	13947822	13947822	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtggtggcgaatccctgCtcacactggaagttgctctg	13	10	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13947822	A	A	13947822	1	1	17	0	1	0	0	0	0	0	0	0	14317	812	28	3		3	SGCZ	8	13947822	3'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	10860398	13947822	132416200	397	34994											
FAM160B2	64760	broad.mit.edu	37	chr8	21955520	21955520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccaccctgcggtcccaGtgggggaccctgggaagtgg	16	14	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21955520	T	T	21955520	1	4	17	0	1	0	0	0	0	0	0	0	5517	1044	36	3		3	FAM160B2	8	21955520	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	8007698	21955520	124408502	398	34995											
PTK2B	2185	broad.mit.edu	37	chr8	27277594	27277594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagccgagtggaggtaGgagtggattcctgggctctg	19	6	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27277594	T	T	27277594	1	4	17	0	1	0	0	0	0	0	0	0	12869	1015	35	2		2	PTK2B	8	27277594	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5322074	27277594	119086428	399	34996											
RBPMS	11030	broad.mit.edu	37	chr8	30407059	30407059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagccaccccttgagcGctccgtctcctgatagtgcc	11	15	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30407059	T	T	30407059	1	4	17	0	1	0	0	0	0	0	0	0	13271	1087	38	3		3	RBPMS	8	30407059	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3129465	30407059	115956963	400	34997											
ADAM32	203102	broad.mit.edu	37	chr8	39009054	39009054	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaatggatgacaacatttTtataagtgaaaaagtgagtt	8	4	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39009054	C	C	39009054	3	2	17	1	0	0	0	0	1	0	0	0	249	1841	64	5	534	5	ADAM32	8	39009054	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	8601995	39009054	107354968	401	34998											
ANK1	286	broad.mit.edu	37	chr8	41530018	41530018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcctcttagaacctggCagcttctcttctgacctctg	7	15	4	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41530018	A	A	41530018	2	1	17	1	0	0	0	0	0	0	0	1	620	697	25	3		3	ANK1	8	41530018	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	2520964	41530018	104834004	402	34999											
PXDNL	137902	broad.mit.edu	37	chr8	52232511	52232511	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaactggacagcaggtTcctttcaccaattcaggact	8	12	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52232511	A	A	52232511	2	1	17	1	0	0	0	0	0	0	0	1	12956	1770	62	5		5	PXDNL	8	52232511	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	10702493	52232511	94131511	403	35000											
ARMC1	55156	broad.mit.edu	37	chr8	66539450	66539450	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattactaaaggcaacttaCaagcaaagcggagtggacga	10	7	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66539450	A	A	66539450	5	1	17	1	0	0	0	0	0	0	1	0	953	492	17	3	688	3	ARMC1	8	66539450	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	14306939	66539450	79824572	404	35001											
SLCO5A1	81796	broad.mit.edu	37	chr8	70710969	70710969	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accagtccaaaaaattattaCcagaatcttctcaacctttg	3	11	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70710969	G	G	70710969	1	3	17	0	1	0	0	0	0	0	0	0	14845	522	18	4		4	SLCO5A1	8	70710969	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	4171519	70710969	75653053	405	35002											
GDAP1	54332	broad.mit.edu	37	chr8	75263508	75263508	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagtgtgaactcttccaGgtgcgcttggtaattgctga	11	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75263508	T	T	75263508	5	4	17	1	0	0	0	0	0	0	1	0	6370	1014	35	2	123	2	GDAP1	8	75263508	Splice_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	4552539	75263508	71100514	406	35003											
RALYL	138046	broad.mit.edu	37	chr8	85097216	85097216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctcgcacgctcaactcCtgctcctcctcttcgcaatg	7	19	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85097216	A	A	85097216	1	1	17	0	1	0	0	0	0	0	0	0	13128	696	24	2		2	RALYL	8	85097216	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	9833708	85097216	61266806	407	35004											
MMP16	4325	broad.mit.edu	37	chr8	89053741	89053741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtatgtggcggggtgttCctttcctcttgaactggaac	12	9	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89053741	A	A	89053741	3	1	17	1	0	0	0	0	1	0	0	0	9748	855	30	3	55	3	MMP16	8	89053741	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3956525	89053741	57310281	408	35005											
NBN	4683	broad.mit.edu	37	chr8	90994912	90994912	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atattttgtgatttcaacccCcttactggaaactagtgaaa	6	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90994912	T	T	90994912	1	4	17	0	1	0	0	0	0	0	0	0	10285	638	22	4		4	NBN	8	90994912	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1941171	90994912	55369110	409	35006											
SLC26A7	115111	broad.mit.edu	37	chr8	92374580	92374580	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcttgtttctctttcaGggaatatgggtcagtacata	9	6	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92374580	T	T	92374580	5	4	17	1	0	0	0	0	0	0	1	0	14636	1014	35	2	1356	2	SLC26A7	8	92374580	Splice_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	1379668	92374580	53989442	410	35007											
RUNX1T1	862	broad.mit.edu	37	chr8	92988184	92988184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagacgcaggcctgtgaaGgaattcccgatgcgcgtcta	12	12	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92988184	T	T	92988184	3	4	17	1	0	0	0	0	1	0	0	0	13858	1000	35	2	529	2	RUNX1T1	8	92988184	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	613604	92988184	53375838	411	35008											
RUNX1T1	862	broad.mit.edu	37	chr8	92998232	92998232	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacatattggaggatatgTaaattgtttattgtcttaaa	8	2	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92998232	A	A	92998232	1	1	17	0	1	0	0	0	0	0	0	0	13858	1653	57	5		5	RUNX1T1	8	92998232	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	10048	92998232	53365790	412	35009											
RGS22	26166	broad.mit.edu	37	chr8	101011627	101011627	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgaagaatcttcccccAgccaccacttaaatgcatta	4	14	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101011627	G	G	101011627	3	3	17	1	0	0	0	0	1	0	0	0	13414	188	7	5	1018	5	RGS22	8	101011627	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	8013395	101011627	45352395	413	35010											
RGS22	26166	broad.mit.edu	37	chr8	101065029	101065030	+	Splice_Site	DNP	CC	AA	AA													cagcatgaatgtacaccctaCctggatctcaggtatctgtg							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	101065030	AA	AA	101065029	5	1	17	1	0	0	0	0	0	0	1	0	13414	521	18	3	2176	3	RGS22	8	101065029	Splice_Site	DNP	CC	TCGA-05-4417-01A-22D-1855-08	53402	101065029	45298993	414	35011											
RIMS2	9699	broad.mit.edu	37	chr8	104930640	104930640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattgttgaaacagtttctGtctttctttttttttttaat	4	4	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104930640	T	T	104930640	1	4	17	0	1	0	0	0	0	0	0	0	13479	1392	48	3		3	RIMS2	8	104930640	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3865611	104930640	41433382	415	35012											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477209	110477209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggccatcttgatgaactGggaatggggtctgcattttg	14	7	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110477209	T	T	110477209	2	4	17	1	0	0	0	0	0	0	0	1	12067	1335	47	2		2	PKHD1L1	8	110477209	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	5546569	110477209	35886813	416	35013											
CSMD3	114788	broad.mit.edu	37	chr8	113358313	113358313	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagctctttcacgtgtttTtaatacacataccaaaacct	4	10	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113358313	G	G	113358313	1	3	17	0	1	0	0	0	0	0	0	0	3980	1856	64	5		5	CSMD3	8	113358313	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	2881104	113358313	33005709	417	35014											
CSMD3	114788	broad.mit.edu	37	chr8	113518953	113518953	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagataacatagtctgcaTtgacggtgatagtccagtca	11	7	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113518953	C	C	113518953	3	2	17	1	0	0	0	0	1	0	0	0	3980	1493	52	5	6433	5	CSMD3	8	113518953	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	160640	113518953	32845069	418	35015											
COL14A1	7373	broad.mit.edu	37	chr8	121262899	121262899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgggagctgacattaaCaccatccttatcacaaacct	6	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121262899	A	A	121262899	3	1	17	1	0	0	0	0	1	0	0	0	3703	477	17	3	2728	3	COL14A1	8	121262899	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	7743946	121262899	25101123	419	35016											
HAS2	3037	broad.mit.edu	37	chr8	122627237	122627237	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagccatccaatatcttacActgctgaggaatgagatcca	7	10	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122627237	C	C	122627237	3	2	17	1	0	0	0	0	1	0	0	0	7028	156	6	5	891	5	HAS2	8	122627237	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	1364338	122627237	23736785	420	35017											
ADCY8	114	broad.mit.edu	37	chr8	131922134	131922134	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttgacataggtaaatggaGagacacatgtataagaccag	11	5	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131922134	T	T	131922134	1	4	17	0	1	0	0	0	0	0	0	0	300	957	33	3		3	ADCY8	8	131922134	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	9294897	131922134	14441888	421	35018											
ADCY8	114	broad.mit.edu	37	chr8	131955633	131955633	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatctggcaaagagctcgttGagcatcctgaccagctcctg	10	12	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131955633	T	T	131955633	2	4	17	1	0	0	0	0	0	0	0	1	300	1277	45	3		3	ADCY8	8	131955633	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	33499	131955633	14408389	422	35019											
LRRC6	23639	broad.mit.edu	37	chr8	133584708	133584708	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttgctagggtctacttctAgtttctccatgtgcttgctt	9	10	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133584708	G	G	133584708	3	3	17	1	0	0	0	0	1	0	0	0	9103	420	15	5	157	5	LRRC6	8	133584708	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	1629075	133584708	12779314	423	35020											
TG	7038	broad.mit.edu	37	chr8	133983961	133983961	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagttccccaaagcaagaatGactaccatcagcccacccag	6	15	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133983961	T	T	133983961	1	4	17	0	1	0	0	0	0	0	0	0	15936	1305	45	3		3	TG	8	133983961	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	399253	133983961	12380061	424	35021											
FAM135B	51059	broad.mit.edu	37	chr8	139163840	139163840	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcatccataatgcaagGtgaaccgctttggctttgct	10	9	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139163840	A	A	139163840	3	1	17	1	0	0	0	0	1	0	0	0	5495	1261	44	4	1374	4	FAM135B	8	139163840	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5179879	139163840	7200182	425	35022											
FAM135B	51059	broad.mit.edu	37	chr8	139255226	139255226	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacccagctccaaagaccaAgttttccagagaaatgatag	8	10	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139255226	G	G	139255226	2	3	17	1	0	0	0	0	0	0	0	1	5495	69	3	5		5	FAM135B	8	139255226	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	91386	139255226	7108796	426	35023											
COL22A1	169044	broad.mit.edu	37	chr8	139675799	139675799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtattccacaggtcagaGttcataggttggacagtctg	11	8	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139675799	T	T	139675799	1	4	17	0	1	0	0	0	0	0	0	0	3713	1044	36	3		3	COL22A1	8	139675799	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	420573	139675799	6688223	427	35024											
COL22A1	169044	broad.mit.edu	37	chr8	139691879	139691879	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttaacacattgccctcccAgtgcacagttttctgaccct	5	16	1	1	rs144461812	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139691879	T	T	139691879	3	4	17	1	0	0	0	0	1	0	0	0	3713	188	7	5	1931	5	COL22A1	8	139691879	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	16080	139691879	6672143	428	35025											
CYP11B1	1584	broad.mit.edu	37	chr8	143956767	143956767	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atagaaagggtcctcagctgGatggggcttcctgtgctctc	13	10	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143956767	A	A	143956767	1	1	17	0	1	0	0	0	0	0	0	0	4178	1189	41	4		4	CYP11B1	8	143956767	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	4264888	143956767	2407255	429	35026											
GPT	2875	broad.mit.edu	37	chr8	145731317	145731317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggcggacgaggtgcgcGgcgcgggggagcgggaagcc	23	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145731317	T	T	145731317	1	4	17	0	1	0	0	0	0	0	0	0	6803	1131	39	1		1	GPT	8	145731317	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1774550	145731317	632705	430	35027											
RECQL4	9401	broad.mit.edu	37	chr8	145737082	145737082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgatgccgtggaagatgcGggccacagccctgctggaga	15	12	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145737082	T	T	145737082	3	4	17	1	0	0	0	0	1	0	0	0	13310	1116	39	1	150	1	RECQL4	8	145737082	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5765	145737082	626940	431	35028											
RFX3	5991	broad.mit.edu	37	chr9	3262874	3262874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatttgatgatcccaaTtaagaagaacaaattgggta	8	4	0	5			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3262874	A	A	3262874	1	1	17	0	1	0	0	0	0	0	0	0	13372	1508	52	5		5	RFX3	9	3262874	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08		3262874	137950557	432	35029											
GLDC	2731	broad.mit.edu	37	chr9	6587241	6587241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgagcttgatccagagGcacaaaggggtggatgtttg	14	7	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6587241	T	T	6587241	3	4	17	1	0	0	0	0	1	0	0	0	6497	1203	42	3	1356	3	GLDC	9	6587241	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3324367	6587241	134626190	433	35030											
PTPRD	5789	broad.mit.edu	37	chr9	8504367	8504367	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttggtttcagtccttgCagcctatatgatgtccctgg	10	10	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8504367	G	G	8504367	2	3	17	1	0	0	0	0	0	0	0	1	12907	697	25	4		4	PTPRD	9	8504367	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1917126	8504367	132709064	434	35031											
HAUS6	54801	broad.mit.edu	37	chr9	19063701	19063701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatttcactcaattcgtccCggtcatcaaaaggcagttta	7	11	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19063701	A	A	19063701	1	1	17	0	1	0	0	0	0	0	0	0	7036	667	23	1		1	HAUS6	9	19063701	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	10559334	19063701	122149730	435	35032											
IFNB1	3456	broad.mit.edu	37	chr9	21077501	21077501	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctccagtttttcttccAggactgtcttcagatggttt	7	10	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21077501	G	G	21077501	3	3	17	1	0	0	0	0	1	0	0	0	7616	188	7	5	199	5	IFNB1	9	21077501	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	2013800	21077501	120135930	436	35033											
TEK	7010	broad.mit.edu	37	chr9	27168459	27168459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagaaaatgtgtgatcCcatttttggtatttgttttc	9	6	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27168459	A	A	27168459	1	1	17	0	1	0	0	0	0	0	0	0	15873	638	22	2		2	TEK	9	27168459	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	6090958	27168459	114044972	437	35034											
CCL19	6363	broad.mit.edu	37	chr9	34689810	34689810	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgggctccctctgcacggtCataggttaactgctgcggcg	13	14	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34689810	T	T	34689810	1	4	17	0	1	0	0	0	0	0	0	0	2918	841	29	4		4	CCL19	9	34689810	3'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	7521351	34689810	106523621	438	35035											
TMEM8B	51754	broad.mit.edu	37	chr9	35853119	35853119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctggccctagcccagccCttgagtctctttctctaggt	8	16	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35853119	A	A	35853119	1	1	17	0	1	0	0	0	0	0	0	0	16338	696	24	2		2	TMEM8B	9	35853119	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1163309	35853119	105360312	439	35036											
FRMPD1	22844	broad.mit.edu	37	chr9	37711392	37711392	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagttgttcgctgcacgtcGgtaaatctctttctatgtcc	8	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37711392	C	C	37711392	2	2	17	1	0	0	0	0	0	0	0	1	6117	1130	39	4		4	FRMPD1	9	37711392	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1858273	37711392	103502039	440	35037											
TRPM3	80036	broad.mit.edu	37	chr9	73442942	73442942	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggccggacaacctgcaggGtatcaaatggaagaggcaga	14	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73442942	A	A	73442942	1	1	17	0	1	0	0	0	0	0	0	0	16712	1276	44	4		4	TRPM3	9	73442942	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	35731550	73442942	67770489	441	35038											
AGTPBP1	23287	broad.mit.edu	37	chr9	88292350	88292350	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacaaatgaaatcccttaCcttttggtccaatctttgca	4	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88292350	A	A	88292350	5	1	17	1	0	0	0	0	0	0	1	0	400	521	18	3	3207	3	AGTPBP1	9	88292350	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	14849408	88292350	52921081	442	35039											
ZNF484	83744	broad.mit.edu	37	chr9	95618559	95618559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaattgttgccactcatcCctactgaagtctacagttac	5	12	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95618559	A	A	95618559	3	1	17	1	0	0	0	0	1	0	0	0	18064	622	22	2	2513	2	ZNF484	9	95618559	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	7326209	95618559	45594872	443	35040											
TBC1D2	55357	broad.mit.edu	37	chr9	100965523	100965523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctaggaacagctctgGggcactgccctacatggctg	13	12	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100965523	T	T	100965523	1	4	17	0	1	0	0	0	0	0	0	0	15727	1247	43	2		2	TBC1D2	9	100965523	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5346964	100965523	40247908	444	35041											
STX17	55014	broad.mit.edu	37	chr9	102691003	102691003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggatttttgtggtaatGggaaataaccctttagtgat	13	3	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102691003	T	T	102691003	1	4	17	0	1	0	0	0	0	0	0	0	15458	1363	47	2		2	STX17	9	102691003	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1725480	102691003	38522428	445	35042											
RNF20	56254	broad.mit.edu	37	chr9	104314720	104314720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctagtactgaggaccCgaaggatgagcctgcggagc	14	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104314720	A	A	104314720	3	1	17	1	0	0	0	0	1	0	0	0	13584	652	23	1	1632	1	RNF20	9	104314720	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1623717	104314720	36898711	446	35043											
FKTN	2218	broad.mit.edu	37	chr9	108370277	108370277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaattaaagaaaatgttGggattatttttaatatttga	6	0	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108370277	T	T	108370277	1	4	17	0	1	0	0	0	0	0	0	0	5976	1363	47	2		2	FKTN	9	108370277	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	4055557	108370277	32843154	447	35044											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112900028	112900028	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacaacatcagtgacagcgGggcatccaatgagacaacca	11	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112900028	C	C	112900028	3	2	17	1	0	0	0	0	1	0	0	0	11504	1232	43	4	2234	4	PALM2-AKAP2	9	112900028	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	4529751	112900028	28313403	448	35045											
SVEP1	79987	broad.mit.edu	37	chr9	113173903	113173903	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgggcagtctctggagaggCgtggtccacaatgggtggct	17	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113173903	G	G	113173903	3	3	17	1	0	0	0	0	1	0	0	0	15538	768	27	4	4675	4	SVEP1	9	113173903	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	273875	113173903	28039528	449	35046											
CEP110	11064	broad.mit.edu	37	chr9	123907706	123907706	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcagtggttttgtagtcAtaaaattaaatcatctcatt	7	5	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123907706	G	G	123907706	1	3	17	0	1	0	0	0	0	0	0	0	3275	232	8	5		5	CEP110	9	123907706	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	10733803	123907706	17305725	450	35047											
PTGS1	5742	broad.mit.edu	37	chr9	125148974	125148974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggactatggggttgaggCcctggtggatgccttctctc	16	9	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125148974	A	A	125148974	3	1	17	1	0	0	0	0	1	0	0	0	12861	739	26	3	1293	3	PTGS1	9	125148974	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1241268	125148974	16064457	451	35048											
DENND1A	57706	broad.mit.edu	37	chr9	126214567	126214567	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacttacgaacttgtagacAgtcttcatggccggatttgc	10	9	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126214567	C	C	126214567	2	2	17	1	0	0	0	0	0	0	0	1	4466	175	7	5		5	DENND1A	9	126214567	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	1065593	126214567	14998864	452	35049											
LRRC8A	56262	broad.mit.edu	37	chr9	131678369	131678369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcacccctgcttttttccCtccagatcgagacgctccct	5	18	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131678369	A	A	131678369	1	1	17	0	1	0	0	0	0	0	0	0	9108	696	24	2		2	LRRC8A	9	131678369	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5463802	131678369	9535062	453	35050											
SURF1	6834	broad.mit.edu	37	chr9	136221852	136221852	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacatggagccagaagcccTcgaacacagacctggagcag	12	12	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136221852	A	A	136221852	1	1	17	0	1	0	0	0	0	0	0	0	15521	1566	54	5		5	SURF1	9	136221852	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	4543483	136221852	4991579	454	35051											
ADAMTS13	11093	broad.mit.edu	37	chr9	136303016	136303016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtcgggcagctgcaGggtaggcgtgtgtggacatt	19	6	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136303016	T	T	136303016	3	4	17	1	0	0	0	0	1	0	0	0	258	1014	35	2	1633	2	ADAMTS13	9	136303016	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	81164	136303016	4910415	455	35052											
COL5A1	1289	broad.mit.edu	37	chr9	137657571	137657571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggcccccaggtcctccCggacctcccgtaagtcccat	10	18	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137657571	A	A	137657571	2	1	17	1	0	0	0	0	0	0	0	1	3728	639	23	1		1	COL5A1	9	137657571	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1354555	137657571	3555860	456	35053											
FCN1	2219	broad.mit.edu	37	chr9	137808249	137808249	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggggccccgggcagcccCgggcagcctcggagaatggt	17	15	0	1	rs140918622	byFrequency;by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137808249	A	A	137808249	2	1	17	1	0	0	0	0	0	0	0	1	5848	639	23	1		1	FCN1	9	137808249	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	150678	137808249	3405182	457	35054											
GRIN1	2902	broad.mit.edu	37	chr9	140051323	140051323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctcgcctaggcatcctcGggctgcagctcatcaacggc	11	15	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140051323	T	T	140051323	3	4	17	1	0	0	0	0	1	0	0	0	6844	1116	39	1	891	1	GRIN1	9	140051323	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2243074	140051323	1162108	458	35055											
DIP2C	22982	broad.mit.edu	37	chr10	395457	395457	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagcagcttgcagagagcGcgcacgcgtcatacaactca	11	13	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	395457	A	A	395457	1	1	17	0	1	0	0	0	0	0	0	0	4569	1102	38	4		4	DIP2C	10	395457	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08		395457	135139290	459	35056											
PITRM1	10531	broad.mit.edu	37	chr10	3181348	3181348	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctatgggttaacagctcTattttatatctgatttagtc	6	7	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3181348	C	C	3181348	1	2	17	0	1	0	0	0	0	0	0	0	12048	1537	53	5		5	PITRM1	10	3181348	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	2785891	3181348	132353399	460	35057											
KIN	22944	broad.mit.edu	37	chr10	7820806	7820806	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgttgcttacccacctgttCcttcccttccaggcctcttc	5	17	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7820806	T	T	7820806	3	4	17	1	0	0	0	0	1	0	0	0	8386	864	30	4	664	4	KIN	10	7820806	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4639458	7820806	127713941	461	35058											
TAF3	83860	broad.mit.edu	37	chr10	7866631	7866631	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattctggaaacacaatagaAacatttactgttacttacaa	4	7	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7866631	G	G	7866631	1	3	17	0	1	0	0	0	0	0	0	0	15644	29	1	5		5	TAF3	10	7866631	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	45825	7866631	127668116	462	35059											
FAM171A1	221061	broad.mit.edu	37	chr10	15254951	15254951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaggggcctctcctccCgtttctgccaggggcttttc	10	16	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15254951	A	A	15254951	3	1	17	1	0	0	0	0	1	0	0	0	5535	652	23	1	40	1	FAM171A1	10	15254951	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	7388320	15254951	120279796	463	35060											
ITGA8	8516	broad.mit.edu	37	chr10	15561251	15561251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaattccctcaacagccCctctagtttaaaaggaaaac	4	12	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15561251	A	A	15561251	1	1	17	0	1	0	0	0	0	0	0	0	7952	638	22	2		2	ITGA8	10	15561251	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	306300	15561251	119973496	464	35061											
CUBN	8029	broad.mit.edu	37	chr10	16970382	16970382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcagcttagccaaagcaGctcacacatttttctcagaa	6	11	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16970382	T	T	16970382	1	4	17	0	1	0	0	0	0	0	0	0	4084	986	34	3		3	CUBN	10	16970382	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1409131	16970382	118564365	465	35062											
MLLT10	8028	broad.mit.edu	37	chr10	21962398	21962398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacagttactctcactccCaacagtcatcagcaaccaaa	4	14	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21962398	A	A	21962398	3	1	17	1	0	0	0	0	1	0	0	0	9719	595	21	2	1209	2	MLLT10	10	21962398	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4992016	21962398	113572349	466	35063											
PIP4K2A	5305	broad.mit.edu	37	chr10	22839534	22839534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaaagctcctaaaaccCaacagggctgatatttatac	5	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22839534	A	A	22839534	1	1	17	0	1	0	0	0	0	0	0	0	12031	609	21	2		2	PIP4K2A	10	22839534	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	877136	22839534	112695213	467	35064											
ARMC3	219681	broad.mit.edu	37	chr10	23257454	23257454	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttatttattttgagatagGatcttgctctgtttctcagg	8	5	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23257454	T	T	23257454	1	4	17	0	1	0	0	0	0	0	0	0	956	1189	41	3		3	ARMC3	10	23257454	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	417920	23257454	112277293	468	35065											
MYO3A	53904	broad.mit.edu	37	chr10	26310614	26310614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtccagtatctgcagccCgatttacttcctccagccac	8	15	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26310614	A	A	26310614	1	1	17	0	1	0	0	0	0	0	0	0	10170	667	23	1		1	MYO3A	10	26310614	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3053160	26310614	109224133	469	35066											
MTPAP	55149	broad.mit.edu	37	chr10	30604933	30604934	+	Frame_Shift_Ins	INS	-	A	A													ttatcgaaagcaaaattgccINSaaaatactcaaaaaattcct							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30604934	A	A	30604933	7	5	17	1	0	1	1	0	0	0	0	0	10050	594	21	0	411	0	MTPAP	10	30604933	Frame_Shift_Ins	INS	-	TCGA-05-4417-01A-22D-1855-08	4294319	30604933	104929814	470	35067											
LYZL2	119180	broad.mit.edu	37	chr10	30900869	30900869	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgttgctgcaaagcatcctGggtccagttccagtttagga	12	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30900869	T	T	30900869	1	4	17	0	1	0	0	0	0	0	0	0	9220	1363	47	2		2	LYZL2	10	30900869	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	295936	30900869	104633878	471	35068											
ZNF37A	7587	broad.mit.edu	37	chr10	38403681	38403681	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcaaaattgtgattttccAgggatcagtgtcgtttaggg	13	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38403681	G	G	38403681	5	3	17	1	0	0	0	0	0	0	1	0	17998	202	7	5	20	5	ZNF37A	10	38403681	Splice_Site	SNP	A	TCGA-05-4417-01A-22D-1855-08	7502812	38403681	97131066	472	35069											
GDF10	2662	broad.mit.edu	37	chr10	48429290	48429290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccttggcctgccacaggCcgcgcggtgggggcgccagg	18	14	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48429290	A	A	48429290	3	1	17	1	0	0	0	0	1	0	0	0	6375	739	26	3	848	3	GDF10	10	48429290	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	10025609	48429290	87105457	473	35070											
FRMPD2	143162	broad.mit.edu	37	chr10	49447647	49447647	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttaggccttgctgcttaCcggttaacaaggaggctgca	11	11	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49447647	A	A	49447647	5	1	17	1	0	0	0	0	0	0	1	0	6118	521	18	3	3232	3	FRMPD2	10	49447647	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	1018357	49447647	86087100	474	35071											
CHAT	1103	broad.mit.edu	37	chr10	50835611	50835611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaaggcctggtgccacGggccacccaacaagtgacat	13	12	0	2	rs56722599	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50835611	T	T	50835611	1	4	17	0	1	0	0	0	0	0	0	0	3344	1131	39	1		1	CHAT	10	50835611	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1387964	50835611	84699136	475	35072											
CHAT	1103	broad.mit.edu	37	chr10	50870909	50870909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgacaacaagcccactagcTggaatcaggcaaatcctgcc	9	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50870909	A	A	50870909	1	1	17	0	1	0	0	0	0	0	0	0	3344	1595	55	5		5	CHAT	10	50870909	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	35298	50870909	84663838	476	35073											
NCOA4	8031	broad.mit.edu	37	chr10	51585241	51585241	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggatgcctgtggaacccaAacctgagcctgagaagcata	12	10	0	2	rs61754798	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51585241	G	G	51585241	3	3	17	1	0	0	0	0	1	0	0	0	10326	14	1	5	1418	5	NCOA4	10	51585241	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	714332	51585241	83949506	477	35074											
SGMS1	259230	broad.mit.edu	37	chr10	52103484	52103484	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaaaagtcttgccccactCcatggggtactgagagcgct	11	12	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52103484	A	A	52103484	4	1	17	1	0	0	0	0	0	1	0	0	14327	864	30	3	870	3	SGMS1	10	52103484	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	518243	52103484	83431263	478	35075											
A1CF	29974	broad.mit.edu	37	chr10	52595888	52595888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgatgactctcatactccaCgaaggcaaagcctcggtttt	8	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52595888	A	A	52595888	3	1	17	1	0	0	0	0	1	0	0	0	2	536	19	3	1266	3	A1CF	10	52595888	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	492404	52595888	82938859	479	35076											
PCDH15	65217	broad.mit.edu	37	chr10	55626670	55626670	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaagcaggaaaagataaccCttatgaaatggcttactttt	7	6	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55626670	G	G	55626670	1	3	17	0	1	0	0	0	0	0	0	0	11605	696	24	4		4	PCDH15	10	55626670	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3030782	55626670	79908077	480	35077											
PCDH15	65217	broad.mit.edu	37	chr10	55626692	55626692	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaaatggcttacttttgTttgtaagaatgaggtttctt	9	3	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55626692	C	C	55626692	1	2	17	0	1	0	0	0	0	0	0	0	11605	1740	60	5		5	PCDH15	10	55626692	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	22	55626692	79908055	481	35078											
PCDH15	65217	broad.mit.edu	37	chr10	56360535	56360535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagattctcccataggGgctccagacattgtatttta	8	9	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56360535	T	T	56360535	1	4	17	0	1	0	0	0	0	0	0	0	11605	1247	43	2		2	PCDH15	10	56360535	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	733843	56360535	79174212	482	35079											
ANK3	288	broad.mit.edu	37	chr10	61946574	61946574	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggaagcaattccttgccGggtaactgcgttggcatcag	13	10	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61946574	T	T	61946574	2	4	17	1	0	0	0	0	0	0	0	1	622	1115	39	1		1	ANK3	10	61946574	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	5586039	61946574	73588173	483	35080											
CTNNA3	29119	broad.mit.edu	37	chr10	68535098	68535098	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactctttttttcctgttctAaattaatttgaaaggaacaa	4	6	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68535098	G	G	68535098	1	3	17	0	1	0	0	0	0	0	0	0	4048	377	13	5		5	CTNNA3	10	68535098	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	6588524	68535098	66999649	484	35081											
HERC4	26091	broad.mit.edu	37	chr10	69692462	69692462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaccttatgaaagccCgcatgaaaagcatcaaataa	6	11	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69692462	A	A	69692462	2	1	17	1	0	0	0	0	0	0	0	1	7127	639	23	1		1	HERC4	10	69692462	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1157364	69692462	65842285	485	35082											
MYPN	84665	broad.mit.edu	37	chr10	69909840	69909840	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagggattggatggaaaacCtatcattgcagctcctgtgt	12	8	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69909840	G	G	69909840	3	3	17	1	0	0	0	0	1	0	0	0	10192	681	24	4	1307	4	MYPN	10	69909840	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	217378	69909840	65624907	486	35083											
PBLD	64081	broad.mit.edu	37	chr10	70048877	70048877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgagcatccactgtgagcCaagcatgcccatcgtctcca	8	14	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70048877	A	A	70048877	1	1	17	0	1	0	0	0	0	0	0	0	11583	609	21	2		2	PBLD	10	70048877	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	139037	70048877	65485870	487	35084											
PBLD	64081	broad.mit.edu	37	chr10	70056663	70056663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgcaaagttgtctgtcGggtgcagttttcggataaaa	12	5	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70056663	T	T	70056663	3	4	17	1	0	0	0	0	1	0	0	0	11583	1116	39	1	823	1	PBLD	10	70056663	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	7786	70056663	65478084	488	35085											
SRGN	5552	broad.mit.edu	37	chr10	70847845	70847846	+	5'UTR	DNP	GA	AG	AG													aacattttctaaaagggacaGagagcaccctgctacatttc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	70847846	AG	AG	70847845	1	1	17	0	1	0	0	0	0	0	0	0	15266	957	33	4		4	SRGN	10	70847845	5'UTR	DNP	GA	TCGA-05-4417-01A-22D-1855-08	791182	70847845	64686902	489	35086											
PSAP	5660	broad.mit.edu	37	chr10	73579616	73579616	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccgacagggacttcggCagcttcgagcacattttgtc	10	12	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73579616	A	A	73579616	2	1	17	1	0	0	0	0	0	0	0	1	12749	697	25	3		3	PSAP	10	73579616	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	2731771	73579616	61955131	490	35087											
SPOCK2	9806	broad.mit.edu	37	chr10	73826608	73826608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagagcctggaacttcGggtagagcccacacgggtga	14	11	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73826608	T	T	73826608	1	4	17	0	1	0	0	0	0	0	0	0	15198	1131	39	1		1	SPOCK2	10	73826608	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	246992	73826608	61708139	491	35088											
PPIF	10105	broad.mit.edu	37	chr10	81108851	81108851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaggcagatgtcgtccCaaagacagctggtaagacag	13	9	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81108851	A	A	81108851	3	1	17	1	0	0	0	0	1	0	0	0	12424	594	21	2	221	2	PPIF	10	81108851	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	7282243	81108851	54425896	492	35089											
GRID1	2894	broad.mit.edu	37	chr10	87407104	87407104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcatatacagcagaatccCggacagtgccataagacatt	7	11	1	2	rs76097378	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87407104	A	A	87407104	3	1	17	1	0	0	0	0	1	0	0	0	6837	652	23	1	997	1	GRID1	10	87407104	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	6298253	87407104	48127643	493	35090											
LDB3	11155	broad.mit.edu	37	chr10	88445600	88445600	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtacacttgtacccctGggtgagcctgcatgtgtgaa	14	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88445600	T	T	88445600	1	4	17	0	1	0	0	0	0	0	0	0	8769	1363	47	2		2	LDB3	10	88445600	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1038496	88445600	47089147	494	35091											
PTEN	5728	broad.mit.edu	37	chr10	89717676	89717676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattcaggacccacacgacGggaagacaagttcatgtact	9	11	2	1	rs121909235		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89717676	T	T	89717676	3	4	17	1	0	0	0	0	1	0	0	0	12844	1116	39	1	727	1	PTEN	10	89717676	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1272076	89717676	45817071	495	35092											
BTAF1	9044	broad.mit.edu	37	chr10	93786944	93786944	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacattggaagaaaaaataAtggggttgcagaaattcaag	11	3	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93786944	T	T	93786944	3	4	17	1	0	0	0	0	1	0	0	0	1545	101	4	5	5439	5	BTAF1	10	93786944	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	4069268	93786944	41747803	496	35093											
EXOC6	54536	broad.mit.edu	37	chr10	94669290	94669290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaaatcttcccaaactcCgtgaggatattaaagaaatc	6	8	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94669290	A	A	94669290	3	1	17	1	0	0	0	0	1	0	0	0	5350	652	23	1	677	1	EXOC6	10	94669290	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	882346	94669290	40865457	497	35094											
C10orf2	56652	broad.mit.edu	37	chr10	102748795	102748795	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccttgaaccagtccacGgggctgcctacccttactct	9	16	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102748795	T	T	102748795	2	4	17	1	0	0	0	0	0	0	0	1	1608	1103	39	1		1	C10orf2	10	102748795	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	8079505	102748795	32785952	498	35095											
CNNM2	54805	broad.mit.edu	37	chr10	104816716	104816716	+	Frame_Shift_Del	DEL	C	-	-													tagactacttcgttctcattCtgcaggtcagaagaattatt							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104816716	-	-	104816716	7	5	17	1	0	1	0	1	0	0	0	0	3645	912	32	0	2124	0	CNNM2	10	104816716	Frame_Shift_Del	DEL	C	TCGA-05-4417-01A-22D-1855-08	2067921	104816716	30718031	499	35096											
GSTO2	119391	broad.mit.edu	37	chr10	106039228	106039228	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaattcagcaacctggaagAggtacaaaaaggggtccctc	12	9	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106039228	T	T	106039228	3	4	17	1	0	0	0	0	1	0	0	0	6909	318	11	5	481	5	GSTO2	10	106039228	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	1222512	106039228	29495519	500	35097											
SORCS3	22986	broad.mit.edu	37	chr10	106970800	106970800	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatgtgttatgactttctgGatggcaatagggacatgtat	11	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106970800	T	T	106970800	1	4	17	0	1	0	0	0	0	0	0	0	15046	1189	41	3		3	SORCS3	10	106970800	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	931572	106970800	28563947	501	35098											
MXI1	4601	broad.mit.edu	37	chr10	111987959	111987959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcagagtgtgaacatgGctacgcctcttcattcccgt	8	12	4	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111987959	T	T	111987959	3	4	17	1	0	0	0	0	1	0	0	0	10096	1203	42	3	370	3	MXI1	10	111987959	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5017159	111987959	23546788	502	35099											
PDCD4	27250	broad.mit.edu	37	chr10	112657765	112657766	+	Intron	INS	-	T	T													tttgtatctgttttcatgtcINStttttttttcttcattacag							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112657766	T	T	112657765	6	5	17	0	1	1	1	0	0	0	0	0	11715	928	32	0		0	PDCD4	10	112657765	Intron	INS	-	TCGA-05-4417-01A-22D-1855-08	669806	112657765	22876982	503	35100											
SLC18A2	6571	broad.mit.edu	37	chr10	119026637	119026637	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaagaaacattttacgtttGagtttgttgatgttttatta	7	4	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119026637	C	C	119026637	1	2	17	0	1	0	0	0	0	0	0	0	14539	1305	45	4		4	SLC18A2	10	119026637	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	6368872	119026637	16508110	504	35101											
GRK5	2869	broad.mit.edu	37	chr10	121184541	121184541	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggggagaaccattccaCgaatatctggacagcatgtt	11	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121184541	T	T	121184541	2	4	17	1	0	0	0	0	0	0	0	1	6858	535	19	4		4	GRK5	10	121184541	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	2157904	121184541	14350206	505	35102											
GRK5	2869	broad.mit.edu	37	chr10	121199253	121199253	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttcagagatctgaaaCctgaaaacatcctgttagat	6	9	2	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121199253	T	T	121199253	3	4	17	1	0	0	0	0	1	0	0	0	6858	507	18	4	978	4	GRK5	10	121199253	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	14712	121199253	14335494	506	35103											
RGS10	6001	broad.mit.edu	37	chr10	121275212	121275212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgcacacacagccttcCcggcctgagccctgctctcc	7	19	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121275212	A	A	121275212	1	1	17	0	1	0	0	0	0	0	0	0	13402	638	22	2		2	RGS10	10	121275212	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	75959	121275212	14259535	507	35104											
CTBP2	1488	broad.mit.edu	37	chr10	126716294	126716294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatcccagctctgagaaCgaccaatatttatatgcctg	7	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126716294	A	A	126716294	1	1	17	0	1	0	0	0	0	0	0	0	4032	536	19	3		3	CTBP2	10	126716294	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5441082	126716294	8818453	508	35105											
ADAM12	8038	broad.mit.edu	37	chr10	127782765	127782765	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttggccttatttcccaggtCtccctccccacagaaatata	5	15	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127782765	T	T	127782765	1	4	17	0	1	0	0	0	0	0	0	0	236	928	32	4		4	ADAM12	10	127782765	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1066471	127782765	7751982	509	35106											
TCERG1L	256536	broad.mit.edu	37	chr10	133058582	133058582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtcaggaagtggcgcgGctgcacgctggagggggacg	20	9	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133058582	T	T	133058582	3	4	17	1	0	0	0	0	1	0	0	0	15808	1203	42	3	1000	3	TCERG1L	10	133058582	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5275817	133058582	2476165	510	35107											
MUC5B	727897	broad.mit.edu	37	chr11	1272644	1272644	+	Missense_Mutation	SNP	C	A	A													gtcctccaccccagggaccaCctggatcctcacagagccga							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1272644	A	A	1272644	3	1	17	1	0	0	0	0	1	0	0	0	10073	507	18	3	14665	3	MUC5B	11	1272644	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08		1272644	133733872	511	35108	200	2									
MUC5B	727897	broad.mit.edu	37	chr11	1272646	1272646	+	Missense_Mutation	SNP	T	C	C													cctccaccccagggaccaccTggatcctcacagagccgagc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1272646	C	C	1272646	3	2	17	1	0	0	0	0	1	0	0	0	10073	1580	55	5	14667	5	MUC5B	11	1272646	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	2	1272646	133733870	512	35109	200	2									
HBB	3043	broad.mit.edu	37	chr11	5248282	5248282	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggttgctagtgaacacaGttgtgtcagaagcaaatgta	12	5	1	3	rs63750628		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5248282	T	T	5248282	1	4	17	1	0	0	0	0	0	0	0	0	7044	1044	36	3		3	HBB	11	5248282	Translation_Start_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	3975636	5248282	129758234	513	35110											
TPP1	1200	broad.mit.edu	37	chr11	6637657	6637657	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatctccatagctcacagTatgcacatgtggcagggctg	10	11	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6637657	C	C	6637657	3	2	17	1	0	0	0	0	1	0	0	0	16535	1638	57	5	751	5	TPP1	11	6637657	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	1389375	6637657	128368859	514	35111											
DCHS1	8642	broad.mit.edu	37	chr11	6662431	6662431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggaaggctggagcatgGtcgttgatgtcagccactcg	16	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6662431	T	T	6662431	3	4	17	1	0	0	0	0	1	0	0	0	4320	1252	44	3	9562	3	DCHS1	11	6662431	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	24774	6662431	128344085	515	35112											
RIC3	79608	broad.mit.edu	37	chr11	8190446	8190446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcggctcctgccgcttccCgcgggacaggaaggccttgg	16	15	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8190446	A	A	8190446	3	1	17	1	0	0	0	0	1	0	0	0	13463	652	23	1	1039	1	RIC3	11	8190446	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1528015	8190446	126816070	516	35113											
NRIP3	56675	broad.mit.edu	37	chr11	9007375	9007375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttctccttcatgcttgtGggatttgacatgctccttga	8	10	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9007375	T	T	9007375	3	4	17	1	0	0	0	0	1	0	0	0	10749	1348	47	2	296	2	NRIP3	11	9007375	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	816929	9007375	125999141	517	35114											
TSG101	7251	broad.mit.edu	37	chr11	18505434	18505434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactacttcttgatctaaacGggtaaccatctcttccagtt	5	11	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18505434	T	T	18505434	3	4	17	1	0	0	0	0	1	0	0	0	16741	1116	39	1	358	1	TSG101	11	18505434	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	9498059	18505434	116501082	518	35115											
NELL1	4745	broad.mit.edu	37	chr11	20948922	20948922	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagacttgtcaagtgagTggactgctctatcgagatca	12	7	3	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20948922	C	C	20948922	2	2	17	1	0	0	0	0	0	0	0	1	10428	1693	59	5		5	NELL1	11	20948922	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	2443488	20948922	114057594	519	35116											
GAS2	2620	broad.mit.edu	37	chr11	22748017	22748017	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattttagttgataagatacGcaaattatcttttgtctttg	6	4	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22748017	C	C	22748017	1	2	17	0	1	0	0	0	0	0	0	0	6307	1102	38	4		4	GAS2	11	22748017	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1799095	22748017	112258499	520	35117											
LUZP2	338645	broad.mit.edu	37	chr11	24759796	24759796	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtctcttcaggaggcccTgcaaaatcagcttaaggaga	11	9	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24759796	C	C	24759796	3	2	17	1	0	0	0	0	1	0	0	0	9174	1580	55	5	295	5	LUZP2	11	24759796	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	2011779	24759796	110246720	521	35118											
LRRC4C	57689	broad.mit.edu	37	chr11	40137252	40137252	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggttcaaatacctcaagttGgacagaccttcaaaggcacc	8	11	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40137252	C	C	40137252	2	2	17	1	0	0	0	0	0	0	0	1	9095	1335	47	4		4	LRRC4C	11	40137252	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	15377456	40137252	94869264	522	35119											
TTC17	55761	broad.mit.edu	37	chr11	43436154	43436154	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcagcctctgacctttttGagcctgggaaatgcttacct	8	11	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43436154	A	A	43436154	2	1	17	1	0	0	0	0	0	0	0	1	16810	1281	45	4		4	TTC17	11	43436154	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	3298902	43436154	91570362	523	35120											
ALX4	60529	broad.mit.edu	37	chr11	44296944	44296944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatggccagctgttccCgcgcatacacgtctgggtag	11	14	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44296944	A	A	44296944	3	1	17	1	0	0	0	0	1	0	0	0	558	652	23	1	516	1	ALX4	11	44296944	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	860790	44296944	90709572	524	35121											
CD82	3732	broad.mit.edu	37	chr11	44640139	44640139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcggtggttctgcatggcGgggtgggatggtgcagagcg	20	7	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44640139	T	T	44640139	1	4	17	0	1	0	0	0	0	0	0	0	3070	1131	39	1		1	CD82	11	44640139	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	343195	44640139	90366377	525	35122											
KIAA0652	9776	broad.mit.edu	37	chr11	46690497	46690497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttgacctttgctgtccCggggaactagacctagaagc	10	12	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46690497	A	A	46690497	1	1	17	0	1	0	0	0	0	0	0	0	8258	667	23	1		1	KIAA0652	11	46690497	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2050358	46690497	88316019	526	35123											
RAPSN	5913	broad.mit.edu	37	chr11	47464332	47464332	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgttgacaagctctgccGccttgcaggggaagaacagg	14	9	1	2	rs121909257		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47464332	A	A	47464332	3	1	17	1	0	0	0	0	1	0	0	0	13159	1087	38	4	696	4	RAPSN	11	47464332	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	773835	47464332	87542184	527	35124											
FOLH1	2346	broad.mit.edu	37	chr11	49204890	49204890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattctaatttcacatttgCtagaattgttaaagtaaaac	4	6	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49204890	A	A	49204890	1	1	17	0	1	0	0	0	0	0	0	0	6037	812	28	3		3	FOLH1	11	49204890	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1740558	49204890	85801626	528	35125											
OR4C12	283093	broad.mit.edu	37	chr11	50003113	50003113	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcaatggtcttatttaatCattatctgaagtcacttttt	5	7	5	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50003113	A	A	50003113	3	1	17	1	0	0	0	0	1	0	0	0	11140	826	29	3	8	3	OR4C12	11	50003113	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	798223	50003113	85003403	529	35126											
OR4C46	119749	broad.mit.edu	37	chr11	51515616	51515616	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggaggtgcagagggcatccTacttactgtgatggcctatg	14	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515616	A	A	51515616	3	1	17	1	0	0	0	0	1	0	0	0	11145	1522	53	5	337	5	OR4C46	11	51515616	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	1512503	51515616	83490900	530	35127											
OR4P4	81300	broad.mit.edu	37	chr11	55406518	55406518	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatcagagcatactctgcaGagagacgcagcaaagctctt	9	12	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55406518	A	A	55406518	3	1	17	1	0	0	0	0	1	0	0	0	11174	943	33	4	687	4	OR4P4	11	55406518	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3890902	55406518	79599998	531	35128											
OR5D16	390144	broad.mit.edu	37	chr11	55606148	55606148	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccttatattctacagaGgggatggttaagctgctttg	10	8	2	1	rs17148157		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55606148	T	T	55606148	1	4	17	0	1	0	0	0	0	0	0	0	11250	1015	35	2		2	OR5D16	11	55606148	5'Flank	SNP	G	TCGA-05-4417-01A-22D-1855-08	199630	55606148	79400368	532	35129											
OR8J3	81168	broad.mit.edu	37	chr11	55904484	55904484	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaagcgcaggtggaaaaGgcttttttccttccttctgg	12	9	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904484	T	T	55904484	2	4	17	1	0	0	0	0	0	0	0	1	11336	987	35	2		2	OR8J3	11	55904484	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	298336	55904484	79102032	533	35130											
OR8J3	81168	broad.mit.edu	37	chr11	55904892	55904892	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaagaacaagaaccctccCagttgggtggcacattcata	8	10	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55904892	A	A	55904892	2	1	17	1	0	0	0	0	0	0	0	1	11336	581	21	2		2	OR8J3	11	55904892	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	408	55904892	79101624	534	35131											
OR5M3	219482	broad.mit.edu	37	chr11	56237227	56237227	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaagatcagagtaccataGaatataatgacagctgtcag	9	6	2	5			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56237227	T	T	56237227	3	4	17	1	0	0	0	0	1	0	0	0	11269	933	33	3	178	3	OR5M3	11	56237227	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	332335	56237227	78769289	535	35132											
SLC43A3	29015	broad.mit.edu	37	chr11	57182385	57182385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacatgcagatgggctaCctcccagccctaccacatac	9	15	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57182385	A	A	57182385	1	1	17	0	1	0	0	0	0	0	0	0	14748	522	18	3		3	SLC43A3	11	57182385	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	945158	57182385	77824131	536	35133											
FAM111A	63901	broad.mit.edu	37	chr11	58919180	58919180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagagaaacaaaagactcGggttgcattcagagttttaa	9	5	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58919180	T	T	58919180	1	4	17	0	1	0	0	0	0	0	0	0	5445	1131	39	1		1	FAM111A	11	58919180	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1736795	58919180	76087336	537	35134											
OR5AN1	390195	broad.mit.edu	37	chr11	59131885	59131885	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcacttcaactgagttaGcaatccattctcttgtctcc	4	12	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59131885	T	T	59131885	1	4	17	0	1	0	0	0	0	0	0	0	11237	986	34	3		3	OR5AN1	11	59131885	5'Flank	SNP	G	TCGA-05-4417-01A-22D-1855-08	212705	59131885	75874631	538	35135											
MS4A3	932	broad.mit.edu	37	chr11	59837042	59837042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatataaggcatcatatccCctagggcatggtgtctctac	9	10	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59837042	A	A	59837042	1	1	17	0	1	0	0	0	0	0	0	0	9955	638	22	2		2	MS4A3	11	59837042	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	705157	59837042	75169474	539	35136											
INCENP	3619	broad.mit.edu	37	chr11	61913164	61913164	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggcggccaagaagatggagGaggtggaagcacgcaggaag	19	7	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61913164	T	T	61913164	4	4	17	1	0	0	0	0	0	1	0	0	7803	1175	41	3	1950	3	INCENP	11	61913164	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2076122	61913164	73093352	540	35137											
PLCB3	5331	broad.mit.edu	37	chr11	64026145	64026145	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agactgccttcaagacctcgCcctaccccgtcatcctctcc	5	20	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64026145	G	G	64026145	3	3	17	1	0	0	0	0	1	0	0	0	12124	739	26	4	1255	4	PLCB3	11	64026145	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2112981	64026145	70980371	541	35138											
NRXN2	9379	broad.mit.edu	37	chr11	64390132	64390133	+	Intron	DNP	CC	AG	AG													tcccaacagaccccttggacCctcactctaggcaccactac							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	64390133	AG	AG	64390132	1	1	17	0	1	0	0	0	0	0	0	0	10761	638	22	2		2	NRXN2	11	64390132	Intron	DNP	CC	TCGA-05-4417-01A-22D-1855-08	363987	64390132	70616384	542	35139											
SNX32	254122	broad.mit.edu	37	chr11	65620114	65620114	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctaggacctgctgtaccGgcggctgcgggcactggccg	16	14	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65620114	A	A	65620114	3	1	17	1	0	0	0	0	1	0	0	0	15016	1116	39	4	968	4	SNX32	11	65620114	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1229982	65620114	69386402	543	35140											
CATSPER1	117144	broad.mit.edu	37	chr11	65793597	65793597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggctctgccgtgattcCgtgcctcgctgtggtggtga	15	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65793597	A	A	65793597	3	1	17	1	0	0	0	0	1	0	0	0	2713	652	23	1	2136	1	CATSPER1	11	65793597	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	173483	65793597	69212919	544	35141											
SF3B2	10992	broad.mit.edu	37	chr11	65830394	65830394	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagttcccaagtatcagctcTgtacttttgagtgtgccttt	9	9	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65830394	G	G	65830394	1	3	17	0	1	0	0	0	0	0	0	0	14264	1595	55	5		5	SF3B2	11	65830394	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	36797	65830394	69176122	545	35142											
DPP3	10072	broad.mit.edu	37	chr11	66258798	66258798	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccctttccaggtgaccCggggggactacgcgcccatc	13	15	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66258798	A	A	66258798	2	1	17	1	0	0	0	0	0	0	0	1	4768	643	23	1		1	DPP3	11	66258798	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	428404	66258798	68747718	546	35143											
B3GNT6	192134	broad.mit.edu	37	chr11	76750717	76750717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtccccgcgggaggagaGgtccccgcaggaggagacgc	18	12	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76750717	T	T	76750717	3	4	17	1	0	0	0	0	1	0	0	0	1266	1000	35	2	124	2	B3GNT6	11	76750717	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	10491919	76750717	58255799	547	35144											
ODZ4	26011	broad.mit.edu	37	chr11	78387253	78387253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgctctttgcgctggcGccactccaccaggttgaggc	12	15	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78387253	T	T	78387253	3	4	17	1	0	0	0	0	1	0	0	0	10932	1087	38	3	2889	3	ODZ4	11	78387253	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1636536	78387253	56619263	548	35145											
DLG2	1740	broad.mit.edu	37	chr11	84256267	84256267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggattgtccttcatcaCcagaggggctggagcttctg	12	10	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84256267	A	A	84256267	1	1	17	0	1	0	0	0	0	0	0	0	4595	522	18	3		3	DLG2	11	84256267	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5869014	84256267	50750249	549	35146											
TMEM135	65084	broad.mit.edu	37	chr11	86807186	86807186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacttgtgccagtgttgatGctgaaacaggactactactt	9	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86807186	T	T	86807186	1	4	17	0	1	0	0	0	0	0	0	0	16174	1334	46	3		3	TMEM135	11	86807186	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2550919	86807186	48199330	550	35147											
MMP12	4321	broad.mit.edu	37	chr11	102742689	102742689	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaattattgattctttatCagcaaaaagagagagaaaaa	7	3	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102742689	A	A	102742689	1	1	17	0	1	0	0	0	0	0	0	0	9744	841	29	3		3	MMP12	11	102742689	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	15935503	102742689	32263827	551	35148											
ATM	472	broad.mit.edu	37	chr11	108218090	108218090	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacttgtacatatagatcTaggtaagtaataaaatctat	6	4	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108218090	G	G	108218090	3	3	17	1	0	0	0	0	1	0	0	0	1113	1522	53	5	8899	5	ATM	11	108218090	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	5475401	108218090	26788426	552	35149											
ARHGAP20	57569	broad.mit.edu	37	chr11	110454436	110454436	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataccttaggagaacaacatTggctctcggaagctggtcta	10	9	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110454436	G	G	110454436	3	3	17	1	0	0	0	0	1	0	0	0	872	1812	63	5	2146	5	ARHGAP20	11	110454436	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	2236346	110454436	24552080	553	35150											
DIXDC1	85458	broad.mit.edu	37	chr11	111863664	111863664	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgccatgaattctttctTattcttgcaggtggatctgc	10	9	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111863664	A	A	111863664	1	1	17	0	1	0	0	0	0	0	0	0	4581	1769	61	5		5	DIXDC1	11	111863664	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	1409228	111863664	23142852	554	35151											
FXYD6	53826	broad.mit.edu	37	chr11	117712685	117712685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccccctgacccctgcacCcagggttgccatcgctcacc	7	20	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117712685	A	A	117712685	1	1	17	0	1	0	0	0	0	0	0	0	6182	638	22	2		2	FXYD6	11	117712685	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5849021	117712685	17293831	555	35152											
THY1	7070	broad.mit.edu	37	chr11	119290905	119290905	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctggtgaagttggttcGggagcggtatgtgtgctcag	17	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119290905	T	T	119290905	2	4	17	1	0	0	0	0	0	0	0	1	16008	1124	39	1		1	THY1	11	119290905	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1578220	119290905	15715611	556	35153											
SORL1	6653	broad.mit.edu	37	chr11	121358826	121358826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttttccatcccatttcGggcagctgatctcctcctac	7	15	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121358826	T	T	121358826	3	4	17	1	0	0	0	0	1	0	0	0	15048	1116	39	1	628	1	SORL1	11	121358826	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2067921	121358826	13647690	557	35154											
VSIG2	23584	broad.mit.edu	37	chr11	124619716	124619716	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgcagtagagcctccCacagaggtttgtccactctg	10	13	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124619716	A	A	124619716	2	1	17	1	0	0	0	0	0	0	0	1	17351	581	21	2		2	VSIG2	11	124619716	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	3260890	124619716	10386800	558	35155											
ROBO4	54538	broad.mit.edu	37	chr11	124756925	124756925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagggctacctcctcagGggtcagcacgctgtcttgat	12	13	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124756925	T	T	124756925	3	4	17	1	0	0	0	0	1	0	0	0	13627	1232	43	2	656	2	ROBO4	11	124756925	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	137209	124756925	10249591	559	35156											
PRDM10	56980	broad.mit.edu	37	chr11	129781911	129781911	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtctgaagagaatgtcttCcctctcattaactctgataa	7	9	4	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129781911	A	A	129781911	1	1	17	0	1	0	0	0	0	0	0	0	12557	870	30	3		3	PRDM10	11	129781911	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5024986	129781911	5224605	560	35157											
IGSF9B	22997	broad.mit.edu	37	chr11	133801993	133801993	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgcaggggacggccgtcCttgttccacttgaccacggt	12	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133801993	G	G	133801993	3	3	17	1	0	0	0	0	1	0	0	0	7676	680	24	4	3014	4	IGSF9B	11	133801993	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4020082	133801993	1204523	561	35158											
NDUFA9	4704	broad.mit.edu	37	chr12	4796315	4796315	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttggcgtcttttgggtcGgcccatgtggtttgagcacc	14	9	1	1	rs3210088	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4796315	T	T	4796315	1	4	17	0	1	0	0	0	0	0	0	0	10367	1131	39	1		1	NDUFA9	12	4796315	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08		4796315	129055580	562	35159											
KCNA1	3736	broad.mit.edu	37	chr12	5021670	5021670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaccactgtaggatacGgtgacatgtaccctgtgaca	10	11	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021670	T	T	5021670	3	4	17	1	0	0	0	0	1	0	0	0	8071	1116	39	1	1128	1	KCNA1	12	5021670	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	225355	5021670	128830225	563	35160											
FOXJ2	55810	broad.mit.edu	37	chr12	8192708	8192708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccctcagcgagatttacCgctggatctgtgataacttc	9	11	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8192708	A	A	8192708	3	1	17	1	0	0	0	0	1	0	0	0	6072	652	23	1	282	1	FOXJ2	12	8192708	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3171038	8192708	125659187	564	35161											
PZP	5858	broad.mit.edu	37	chr12	9318050	9318050	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatatgcataaagctaacgtCaagaactgaatccacttaag	6	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9318050	T	T	9318050	1	4	17	0	1	0	0	0	0	0	0	0	12977	841	29	4		4	PZP	12	9318050	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1125342	9318050	124533845	565	35162											
PIK3C2G	5288	broad.mit.edu	37	chr12	18491577	18491577	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactaacaactatatttccGtgtgtatgtttgtgtgtatc	7	6	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18491577	A	A	18491577	1	1	17	0	1	0	0	0	0	0	0	0	12006	1160	40	4		4	PIK3C2G	12	18491577	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	9173527	18491577	115360318	566	35163											
SLCO1B1	10599	broad.mit.edu	37	chr12	21358830	21358830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgacatctcatagagatGtaccactttcttattgcaac	6	10	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21358830	T	T	21358830	3	4	17	1	0	0	0	0	1	0	0	0	14837	1377	48	3	1398	3	SLCO1B1	12	21358830	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2867253	21358830	112493065	567	35164											
SOX5	6660	broad.mit.edu	37	chr12	23757422	23757422	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtatgcctggcagcttccCtcctggagatacctgcattg	12	12	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23757422	G	G	23757422	3	3	17	1	0	0	0	0	1	0	0	0	15068	681	24	4	1266	4	SOX5	12	23757422	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2398592	23757422	110094473	568	35165											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	17	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1640863	25398285	108453610	569	35166											
ITPR2	3709	broad.mit.edu	37	chr12	26639154	26639154	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttttcctcagtgtttccCgcttctggtcctgtgcacat	8	12	2	0	rs111760835		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26639154	A	A	26639154	2	1	17	1	0	0	0	0	0	0	0	1	7991	639	23	1		1	ITPR2	12	26639154	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1240869	26639154	107212741	570	35167											
IPO8	10526	broad.mit.edu	37	chr12	30823942	30823942	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttatagaatgaaccaccCcttggttgagatagttgaat	10	6	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30823942	A	A	30823942	3	1	17	1	0	0	0	0	1	0	0	0	7868	623	22	2	2183	2	IPO8	12	30823942	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4184788	30823942	103027953	571	35168											
NELL2	4753	broad.mit.edu	37	chr12	45170985	45170985	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtctatgctgacaagtaAtatatggggactccacagtg	10	7	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45170985	G	G	45170985	1	3	17	0	1	0	0	0	0	0	0	0	10429	116	4	5		5	NELL2	12	45170985	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	14347043	45170985	88680910	572	35169											
RAPGEF3	10411	broad.mit.edu	37	chr12	48131965	48131965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcccaccccggggaccCgccctctcaccagggttgtg	11	19	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48131965	A	A	48131965	1	1	17	0	1	0	0	0	0	0	0	0	13153	667	23	1		1	RAPGEF3	12	48131965	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2960980	48131965	85719930	573	35170											
RAPGEF3	10411	broad.mit.edu	37	chr12	48143890	48143890	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggggacaaagatgtggcCaggtcaggtgttcccaggat	16	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48143890	T	T	48143890	1	4	17	0	1	0	0	0	0	0	0	0	13153	609	21	4		4	RAPGEF3	12	48143890	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	11925	48143890	85708005	574	35171											
ADCY6	112	broad.mit.edu	37	chr12	49177055	49177055	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggggggcccgcaggggtggGgctgggtggctctgcatccc	21	11	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49177055	C	C	49177055	3	2	17	1	0	0	0	0	1	0	0	0	298	1232	43	4	3427	4	ADCY6	12	49177055	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1033165	49177055	84674840	575	35172											
DDX23	9416	broad.mit.edu	37	chr12	49230630	49230630	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccctccaactcctttctGtagagcctctgggctctgtc	9	15	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49230630	A	A	49230630	1	1	17	0	1	0	0	0	0	0	0	0	4383	1392	48	4		4	DDX23	12	49230630	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	53575	49230630	84621265	576	35173											
LARP4	113251	broad.mit.edu	37	chr12	50835427	50835427	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggcaagccaattatgGtaagaaatagagatcagtgt	11	5	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50835427	T	T	50835427	5	4	17	1	0	0	0	0	0	0	1	0	8702	1275	44	3	835	3	LARP4	12	50835427	Splice_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	1604797	50835427	83016468	577	35174											
KRT76	51350	broad.mit.edu	37	chr12	53165920	53165920	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcagacttgctcctctgGgcaatctcctcatactgggc	9	14	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53165920	T	T	53165920	2	4	17	1	0	0	0	0	0	0	0	1	8560	1219	43	2		2	KRT76	12	53165920	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	2330493	53165920	80685975	578	35175											
RARG	5916	broad.mit.edu	37	chr12	53607810	53607810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtcccatatgtgggtcGggctgtggcaggacccacag	17	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53607810	T	T	53607810	1	4	17	0	1	0	0	0	0	0	0	0	13162	1131	39	1		1	RARG	12	53607810	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	441890	53607810	80244085	579	35176											
CALCOCO1	57658	broad.mit.edu	37	chr12	54110043	54110043	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccaaggggcctcactcaCcacccgctgctgggcctggc	12	17	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54110043	T	T	54110043	5	4	17	1	0	0	0	0	0	0	1	0	2603	521	18	4	1101	4	CALCOCO1	12	54110043	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	502233	54110043	79741852	580	35177											
OR9K2	441639	broad.mit.edu	37	chr12	55524042	55524042	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actctgttcaaatgtccacaCgtctgtgtactcagttggtg	9	10	4	0	rs143111490		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55524042	G	G	55524042	3	3	17	1	0	0	0	0	1	0	0	0	11348	536	19	4	492	4	OR9K2	12	55524042	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1413999	55524042	78327853	581	35178											
DNAJC14	85406	broad.mit.edu	37	chr12	56222249	56222249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccaatgggctgggtttGggtgctgtgtgtgcttagga	16	7	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56222249	T	T	56222249	3	4	17	1	0	0	0	0	1	0	0	0	4673	1348	47	2	1938	2	DNAJC14	12	56222249	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	698207	56222249	77629646	582	35179											
PA2G4	5036	broad.mit.edu	37	chr12	56505444	56505444	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgatagaactttgtcccAgtaaacccatcataaattga	5	8	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56505444	G	G	56505444	1	3	17	0	1	0	0	0	0	0	0	0	11455	203	7	5		5	PA2G4	12	56505444	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	283195	56505444	77346451	583	35180											
MYL6	4637	broad.mit.edu	37	chr12	56552540	56552540	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggtcacccttagggagaggGacaccctccccccagcacct	10	17	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56552540	C	C	56552540	1	2	17	0	1	0	0	0	0	0	0	0	10145	1189	41	4		4	MYL6	12	56552540	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	47096	56552540	77299355	584	35181											
LRP1	4035	broad.mit.edu	37	chr12	57578892	57578892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacggctctatcaagcgcGggagcaaagacaatgccaca	10	13	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57578892	T	T	57578892	3	4	17	1	0	0	0	0	1	0	0	0	9038	1116	39	1	6525	1	LRP1	12	57578892	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1026352	57578892	76273003	585	35182											
LGR5	8549	broad.mit.edu	37	chr12	71974057	71974057	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggttttgttcatttaaaGggttatagaaatgccttatg	10	3	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71974057	T	T	71974057	5	4	17	1	0	0	0	0	0	0	1	0	8829	1014	35	2	1468	2	LGR5	12	71974057	Splice_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	14395165	71974057	61877838	586	35183											
ZFC3H1	196441	broad.mit.edu	37	chr12	72030897	72030897	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatcaactcaaatgcttctCtctgcagcaatattaaacta	3	10	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72030897	A	A	72030897	1	1	17	0	1	0	0	0	0	0	0	0	17759	928	32	3		3	ZFC3H1	12	72030897	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	56840	72030897	61820998	587	35184											
TRHDE	29953	broad.mit.edu	37	chr12	73012670	73012670	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttttaactgtaGggctggctatttgcctcaga	8	6	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73012670	T	T	73012670	5	4	17	1	0	0	0	0	0	0	1	0	16603	1014	35	2	2236	2	TRHDE	12	73012670	Splice_Site	SNP	G	TCGA-05-4417-01A-22D-1855-08	981773	73012670	60839225	588	35185											
TRHDE	29953	broad.mit.edu	37	chr12	73057028	73057028	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagtttatgagaagacacGctttttgtggaatgaggaaa	12	3	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73057028	T	T	73057028	1	4	17	0	1	0	0	0	0	0	0	0	16603	1102	38	3		3	TRHDE	12	73057028	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	44358	73057028	60794867	589	35186											
LRRIQ1	84125	broad.mit.edu	37	chr12	85531673	85531673	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagaaactgacaacagctCtagaggctattaagaatgaa	9	6	1	5			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85531673	A	A	85531673	3	1	17	1	0	0	0	0	1	0	0	0	9116	912	32	3	4329	3	LRRIQ1	12	85531673	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	12474645	85531673	48320222	590	35187											
TDG	6996	broad.mit.edu	37	chr12	104379502	104379502	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcttctcttcaaatggGctaagtatggttccctccac	9	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104379502	A	A	104379502	2	1	17	1	0	0	0	0	0	0	0	1	15847	1190	42	4		4	TDG	12	104379502	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	18847829	104379502	29472393	591	35188											
RFX4	5992	broad.mit.edu	37	chr12	107105339	107105339	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgctgagtcattgcaaatGagggggcaaatccacaaaaa	10	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107105339	A	A	107105339	1	1	17	0	1	0	0	0	0	0	0	0	13373	1305	45	4		4	RFX4	12	107105339	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2725837	107105339	26746556	592	35189											
C12orf51	283450	broad.mit.edu	37	chr12	112677840	112677840	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttcttcaattctgtgaaaGagaaaccaaagctcaggctt	8	8	4	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112677840	A	A	112677840	1	1	17	0	1	0	0	0	0	0	0	0	1709	957	33	4		4	C12orf51	12	112677840	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5572501	112677840	21174055	593	35190											
RPH3A	22895	broad.mit.edu	37	chr12	113313513	113313513	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagcagaccgggtcctGggccagcaggacgctttcca	15	12	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113313513	A	A	113313513	3	1	17	1	0	0	0	0	1	0	0	0	13662	1348	47	4	951	4	RPH3A	12	113313513	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	635673	113313513	20538382	594	35191											
RPH3A	22895	broad.mit.edu	37	chr12	113332509	113332509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgggatatttgctgtGtgttagagaggcacaaatag	13	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113332509	T	T	113332509	1	4	17	0	1	0	0	0	0	0	0	0	13662	1392	48	3		3	RPH3A	12	113332509	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	18996	113332509	20519386	595	35192											
RBM19	9904	broad.mit.edu	37	chr12	114374917	114374917	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacgccaactggagcccactCcagatagagggggacatgat	13	11	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114374917	A	A	114374917	4	1	17	1	0	0	0	0	0	1	0	0	13229	864	30	3	955	3	RBM19	12	114374917	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1042408	114374917	19476978	596	35193											
KSR2	283455	broad.mit.edu	37	chr12	118298088	118298088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggacacaggggcccccCaggtcacctccaggacctcc	12	18	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118298088	A	A	118298088	1	1	17	0	1	0	0	0	0	0	0	0	8654	609	21	2		2	KSR2	12	118298088	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3923171	118298088	15553807	597	35194											
P2RX4	5025	broad.mit.edu	37	chr12	121659800	121659800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccgaggtaggaggccccCgggaagagccccaggcccca	15	17	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121659800	A	A	121659800	1	1	17	0	1	0	0	0	0	0	0	0	11436	667	23	1		1	P2RX4	12	121659800	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3361712	121659800	12192095	598	35195											
NCOR2	9612	broad.mit.edu	37	chr12	124826522	124826522	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggtctgccggttctccaGcgccgccgtgtcggggtagc	16	13	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124826522	A	A	124826522	2	1	17	1	0	0	0	0	0	0	0	1	10331	962	34	4		4	NCOR2	12	124826522	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	3166722	124826522	9025373	599	35196											
AACS	65985	broad.mit.edu	37	chr12	125587637	125587637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccaaacaggtaatgtacCgcattctgacccacaggtcc	7	13	1	1	rs143607506	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125587637	A	A	125587637	1	1	17	0	1	0	0	0	0	0	0	0	9	667	23	1		1	AACS	12	125587637	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	761115	125587637	8264258	600	35197											
POLE	5426	broad.mit.edu	37	chr12	133219373	133219373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagcctcaaagaagatgGggctcacacagcaagacccc	9	15	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133219373	T	T	133219373	1	4	17	0	1	0	0	0	0	0	0	0	12291	1247	43	2		2	POLE	12	133219373	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	7631736	133219373	632522	601	35198											
POLE	5426	broad.mit.edu	37	chr12	133253294	133253294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactccccattaggcctccCtgaacacccacccccagcct	4	21	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133253294	A	A	133253294	1	1	17	0	1	0	0	0	0	0	0	0	12291	696	24	2		2	POLE	12	133253294	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	33921	133253294	598601	602	35199											
ZNF268	10795	broad.mit.edu	37	chr12	133732032	133732032	+	Intron	DEL	T	-	-													ctttgtctccacatacatccTagcattctcaccttaatact							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133732032	-	-	133732032	6	5	17	0	1	1	0	1	0	0	0	0	17933	1537	53	0		0	ZNF268	12	133732032	Intron	DEL	T	TCGA-05-4417-01A-22D-1855-08	478738	133732032	119863	603	35200											
TUBA3C	7278	broad.mit.edu	37	chr13	19752292	19752292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagacccagccaacgcaCtggtctaggttttgacaaaa	8	13	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19752292	A	A	19752292	1	1	17	0	1	0	0	0	0	0	0	0	16872	580	20	3		3	TUBA3C	13	19752292	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08		19752292	95417586	604	35201											
RNF17	56163	broad.mit.edu	37	chr13	25399823	25399823	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctataaaagtgaagatggaGaaaatctggaaatcctctgt	9	5	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25399823	C	C	25399823	3	2	17	1	0	0	0	0	1	0	0	0	13572	943	33	4	2220	4	RNF17	13	25399823	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5647531	25399823	89770055	605	35202											
KL	9365	broad.mit.edu	37	chr13	33635564	33635565	+	Frame_Shift_Ins	INS	-	T	T													tggctgaaccaaagaaacaaINSttttcttcttccttatttca							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33635565	T	T	33635564	7	5	17	1	0	1	1	0	0	0	0	0	8402	101	4	0	2362	0	KL	13	33635564	Frame_Shift_Ins	INS	-	TCGA-05-4417-01A-22D-1855-08	8235741	33635564	81534314	606	35203											
POSTN	10631	broad.mit.edu	37	chr13	38164532	38164532	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccaagttgtcccaagcctCattactcggtgcaaagtaag	8	11	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38164532	G	G	38164532	3	3	17	1	0	0	0	0	1	0	0	0	12354	835	29	4	2172	4	POSTN	13	38164532	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4528968	38164532	77005346	607	35204											
TRPC4	7223	broad.mit.edu	37	chr13	38357466	38357466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttgtaatagaactgaGccatgtttcatgccatgcta	7	8	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38357466	T	T	38357466	3	4	17	1	0	0	0	0	1	0	0	0	16705	971	34	3	2983	3	TRPC4	13	38357466	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	192934	38357466	76812412	608	35205											
CCDC122	160857	broad.mit.edu	37	chr13	44443475	44443475	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttcattaccttctttaGgaaatccttgactcttcctt	4	11	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44443475	A	A	44443475	3	1	17	1	0	0	0	0	1	0	0	0	2784	1000	35	4	803	4	CCDC122	13	44443475	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	6086009	44443475	70726403	609	35206											
KLHL1	57626	broad.mit.edu	37	chr13	70293636	70293636	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatgggagcacacatgttcCacttatttgtatgaggatca	9	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70293636	G	G	70293636	3	3	17	1	0	0	0	0	1	0	0	0	8436	595	21	4	378	4	KLHL1	13	70293636	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	25850161	70293636	44876242	610	35207											
SLAIN1	122060	broad.mit.edu	37	chr13	78337372	78337372	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgcagttttatgtaccCttgaaaaatgggaaagaagt	9	5	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78337372	A	A	78337372	1	1	17	0	1	0	0	0	0	0	0	0	14478	696	24	2		2	SLAIN1	13	78337372	3'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	8043736	78337372	36832506	611	35208											
SLITRK1	114798	broad.mit.edu	37	chr13	84453902	84453902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgagatcctagcgtacaGctgagggcagatctcgtcat	14	10	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84453902	T	T	84453902	3	4	17	1	0	0	0	0	1	0	0	0	14856	962	34	3	353	3	SLITRK1	13	84453902	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	6116530	84453902	30715976	612	35209											
SLITRK5	26050	broad.mit.edu	37	chr13	88330080	88330080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagcccccgccgcagCtgcagctgcagcccggggag	15	17	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88330080	A	A	88330080	3	1	17	1	0	0	0	0	1	0	0	0	14860	796	28	3	2439	3	SLITRK5	13	88330080	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3876178	88330080	26839798	613	35210											
SLC15A1	6564	broad.mit.edu	37	chr13	99337125	99337125	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccatgatggcaaaaattacAcagacgaccagaagcaacgc	9	11	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99337125	G	G	99337125	2	3	17	1	0	0	0	0	0	0	0	1	14511	157	6	5		5	SLC15A1	13	99337125	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	11007045	99337125	15832753	614	35211											
CARKD	55739	broad.mit.edu	37	chr13	111274673	111274673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttccacaaagcacaaaGggcaagatggaagaataggc	11	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111274673	T	T	111274673	3	4	17	1	0	0	0	0	1	0	0	0	2680	1000	35	2	217	2	CARKD	13	111274673	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	11937548	111274673	3895205	615	35212											
OR4N2	390429	broad.mit.edu	37	chr14	20295950	20295950	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggggagggattactcCttgttgtgatggcctttgac	16	6	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20295950	T	T	20295950	3	4	17	1	0	0	0	0	1	0	0	0	11171	681	24	4	345	4	OR4N2	14	20295950	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08		20295950	87053590	616	35213											
METTL3	56339	broad.mit.edu	37	chr14	21971722	21971722	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtggcaggagcatctggcTagagaacgaggggaggtatg	19	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21971722	C	C	21971722	5	2	17	1	0	0	0	0	0	0	1	0	9594	1536	53	5	1461	5	METTL3	14	21971722	Splice_Site	SNP	T	TCGA-05-4417-01A-22D-1855-08	1675772	21971722	85377818	617	35214											
ABHD4	63874	broad.mit.edu	37	chr14	23072869	23072869	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggacccatggggctttccCctccgaccaactaaccccag	9	17	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23072869	A	A	23072869	2	1	17	1	0	0	0	0	0	0	0	1	84	610	22	2		2	ABHD4	14	23072869	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1101147	23072869	84276671	618	35215											
MMP14	4323	broad.mit.edu	37	chr14	23313505	23313505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaacaaacagcagtgcGggagctttggggactgaacc	15	8	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23313505	T	T	23313505	1	4	17	0	1	0	0	0	0	0	0	0	9746	1131	39	1		1	MMP14	14	23313505	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	240636	23313505	84036035	619	35216											
ACIN1	22985	broad.mit.edu	37	chr14	23531553	23531553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccacgtgctgcaacaccCttaaacctgcccacactggt	6	17	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23531553	A	A	23531553	1	1	17	0	1	0	0	0	0	0	0	0	142	696	24	2		2	ACIN1	14	23531553	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	218048	23531553	83817987	620	35217											
MYH6	4624	broad.mit.edu	37	chr14	23874718	23874718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgactaggggtggaggGgggaaggggacttgggtccc	21	7	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23874718	T	T	23874718	1	4	17	0	1	0	0	0	0	0	0	0	10132	1247	43	2		2	MYH6	14	23874718	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	343165	23874718	83474822	621	35218											
RNF31	55072	broad.mit.edu	37	chr14	24619313	24619313	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccagtcgacctccctgCtggccctgggagacagctct	12	17	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24619313	T	T	24619313	2	4	17	1	0	0	0	0	0	0	0	1	13598	796	28	4		4	RNF31	14	24619313	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	744595	24619313	82730227	622	35219											
CTSG	1511	broad.mit.edu	37	chr14	25044579	25044579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatacgccatgtaggggCgggagtggggcctgctctcc	17	10	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25044579	A	A	25044579	3	1	17	1	0	0	0	0	1	0	0	0	4069	768	27	3	688	3	CTSG	14	25044579	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	425266	25044579	82304961	623	35220											
NOVA1	4857	broad.mit.edu	37	chr14	26939563	26939563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagaatctactggaaaataCtgttggggagaaaataatta	9	3	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26939563	A	A	26939563	1	1	17	0	1	0	0	0	0	0	0	0	10649	580	20	3		3	NOVA1	14	26939563	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1894984	26939563	80409977	624	35221											
HECTD1	25831	broad.mit.edu	37	chr14	31626111	31626111	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgccaacgttgacacttTgctaattacaccaagtctgg	7	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31626111	C	C	31626111	3	2	17	1	0	0	0	0	1	0	0	0	7106	1821	63	5	6093	5	HECTD1	14	31626111	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	4686548	31626111	75723429	625	35222											
HEATR5A	25938	broad.mit.edu	37	chr14	31763019	31763022	+	Intron	DEL	TGAT	-	-													aaatacagatataatgtgacTgattgttttgcaatttaaat							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31763022	-	-	31763019	6	5	17	0	1	1	0	1	0	0	0	0	7098	1595	55	0		0	HEATR5A	14	31763019	Intron	DEL	TGAT	TCGA-05-4417-01A-22D-1855-08	136908	31763019	75586521	626	35223											
EGLN3	112399	broad.mit.edu	37	chr14	34419965	34419965	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccaggggcatctcgccCgcagaatcgaggtccgggat	14	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34419965	A	A	34419965	1	1	17	0	1	0	0	0	0	0	0	0	5010	667	23	1		1	EGLN3	14	34419965	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	2656946	34419965	72929575	627	35224											
PPP2R3C	55012	broad.mit.edu	37	chr14	35560259	35560259	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaggaacaatgactcacttAtgcaaatgagacttacccta	6	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35560259	C	C	35560259	1	2	17	0	1	0	0	0	0	0	0	0	12491	464	16	5		5	PPP2R3C	14	35560259	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	1140294	35560259	71789281	628	35225											
FANCM	57697	broad.mit.edu	37	chr14	45605042	45605042	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccggcagggctgtgaaGgtttccgggaagccagccaa	15	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45605042	T	T	45605042	1	4	17	0	1	0	0	0	0	0	0	0	5728	1015	35	2		2	FANCM	14	45605042	5'Flank	SNP	G	TCGA-05-4417-01A-22D-1855-08	10044783	45605042	61744498	629	35226											
KTN1	3895	broad.mit.edu	37	chr14	56125368	56125368	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttgcctttcacttacgTggcaaaaaaattatataacc	5	9	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56125368	A	A	56125368	1	1	17	0	1	0	0	0	0	0	0	0	8657	1711	59	5		5	KTN1	14	56125368	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	10520326	56125368	51224172	630	35227											
C14orf135	64430	broad.mit.edu	37	chr14	60600867	60600867	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacttttaagaaatcttacGgtacaagcagcagaacctcc	6	11	1	2	rs138489606		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60600867	T	T	60600867	2	4	17	1	0	0	0	0	0	0	0	1	1758	1103	39	1		1	C14orf135	14	60600867	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	4475499	60600867	46748673	631	35228											
KCNH5	27133	broad.mit.edu	37	chr14	63448029	63448029	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgactaggttatctctgcaCagtcagtgatgaattcaaat	8	7	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63448029	T	T	63448029	1	4	17	0	1	0	0	0	0	0	0	0	8105	493	17	4		4	KCNH5	14	63448029	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2847162	63448029	43901511	632	35229											
ZFYVE26	23503	broad.mit.edu	37	chr14	68236199	68236199	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcatttcagtgtgaatgTtaaacatttctggatttgaa	9	4	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68236199	C	C	68236199	1	2	17	0	1	0	0	0	0	0	0	0	17794	1740	60	5		5	ZFYVE26	14	68236199	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	4788170	68236199	39113341	633	35230											
ZFYVE26	23503	broad.mit.edu	37	chr14	68274396	68274396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagggccctgcaaagccCgcaatgcctttcgaatgagg	11	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68274396	A	A	68274396	3	1	17	1	0	0	0	0	1	0	0	0	17794	652	23	1	7166	1	ZFYVE26	14	68274396	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	38197	68274396	39075144	634	35231											
RAD51L1	5890	broad.mit.edu	37	chr14	68582178	68582178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctagatgacgagttagtgGgtgcagcgcaccagcatggc	15	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68582178	T	T	68582178	1	4	17	0	1	0	0	0	0	0	0	0	13097	1247	43	2		2	RAD51L1	14	68582178	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	307782	68582178	38767362	635	35232											
RGS6	9628	broad.mit.edu	37	chr14	72431619	72431619	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcctggtcaagtgccgtgcGtgctgtccgtgtggactgtt	15	11	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72431619	C	C	72431619	1	2	17	0	1	0	0	0	0	0	0	0	13418	1160	40	4		4	RGS6	14	72431619	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3849441	72431619	34917921	636	35233											
RGS6	9628	broad.mit.edu	37	chr14	73029202	73029202	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccgcaggtccagggcctGggcccgcggaccccacaggc	14	18	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73029202	T	T	73029202	1	4	17	0	1	0	0	0	0	0	0	0	13418	1363	47	2		2	RGS6	14	73029202	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	597583	73029202	34320338	637	35234											
C14orf43	91748	broad.mit.edu	37	chr14	74189321	74189321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcaggctcctggagagCtcgggctcgggctcccagct	14	15	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74189321	A	A	74189321	1	1	17	0	1	0	0	0	0	0	0	0	1787	812	28	3		3	C14orf43	14	74189321	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1160119	74189321	33160219	638	35235											
C14orf4	64207	broad.mit.edu	37	chr14	77493595	77493595	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcggtgtggctgctgcttcCcaggctcaccggcggtggcg	17	14	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77493595	A	A	77493595	4	1	17	1	0	0	0	0	0	1	0	0	1786	632	22	2	1853	2	C14orf4	14	77493595	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3304274	77493595	29855945	639	35236											
C14orf174	161394	broad.mit.edu	37	chr14	77844532	77844532	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaggacagagccaccCgagcaggctagactggaatt	12	9	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77844532	A	A	77844532	2	1	17	1	0	0	0	0	0	0	0	1	1772	639	23	1		1	C14orf174	14	77844532	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	350937	77844532	29505008	640	35237											
ADCK1	57143	broad.mit.edu	37	chr14	78399674	78399674	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcctgcgtgtgaagggGttgaagctggctgaccgggt	16	9	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78399674	T	T	78399674	2	4	17	1	0	0	0	0	0	0	0	1	288	1248	44	3		3	ADCK1	14	78399674	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	555142	78399674	28949866	641	35238											
NRXN3	9369	broad.mit.edu	37	chr14	80164043	80164043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggacaaaggacgcctcttCcaaggccaactctctgggct	10	13	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80164043	A	A	80164043	3	1	17	1	0	0	0	0	1	0	0	0	10762	854	30	3	2963	3	NRXN3	14	80164043	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1764369	80164043	27185497	642	35239											
KCNK10	54207	broad.mit.edu	37	chr14	88654290	88654290	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttctcaggaacattcatAgggttaggaaggggtcctac	12	8	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88654290	T	T	88654290	1	4	17	0	1	0	0	0	0	0	0	0	8129	435	15	5		5	KCNK10	14	88654290	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	8490247	88654290	18695250	643	35240											
RPS6KA5	9252	broad.mit.edu	37	chr14	91356896	91356896	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctgattcaagagctctgGggcggcataatgaagggtga	15	6	3	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91356896	A	A	91356896	3	1	17	1	0	0	0	0	1	0	0	0	13765	1232	43	4	653	4	RPS6KA5	14	91356896	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2702606	91356896	15992644	644	35241											
BTBD7	55727	broad.mit.edu	37	chr14	93723587	93723587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggtaagatgtgttcaattCgcacaaaaggtaagagagaa	11	4	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93723587	A	A	93723587	3	1	17	1	0	0	0	0	1	0	0	0	1556	884	31	3	1860	3	BTBD7	14	93723587	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2366691	93723587	13625953	645	35242											
TCL1A	8115	broad.mit.edu	37	chr14	96178615	96178615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcggtatcgtccatcaGggtagagctgccacatgata	12	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96178615	T	T	96178615	3	4	17	1	0	0	0	0	1	0	0	0	15826	1000	35	2	113	2	TCL1A	14	96178615	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2455028	96178615	11170925	646	35243											
RTL1	388015	broad.mit.edu	37	chr14	101348403	101348403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgataggggagatgttgCgggagtagaaagcgcagcag	17	7	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101348403	A	A	101348403	3	1	17	1	0	0	0	0	1	0	0	0	13835	768	27	3	1357	3	RTL1	14	101348403	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	5169788	101348403	6001137	647	35244											
PPP2R5C	5527	broad.mit.edu	37	chr14	102359504	102359504	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atttgatcaggattgaacacGagatagtgaatccggccttg	11	7	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102359504	C	C	102359504	1	2	17	0	1	0	0	0	0	0	0	0	12495	1073	37	4		4	PPP2R5C	14	102359504	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1011101	102359504	4990036	648	35245											
TECPR2	9895	broad.mit.edu	37	chr14	102904351	102904351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaactcactggctcttccCttgttagtttgcagaaagct	8	11	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102904351	A	A	102904351	1	1	17	0	1	0	0	0	0	0	0	0	15866	696	24	2		2	TECPR2	14	102904351	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	544847	102904351	4445189	649	35246											
INF2	64423	broad.mit.edu	37	chr14	105181590	105181590	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgcttctgtgtgataagcCgttgagtgcgtttcttttat	11	6	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105181590	T	T	105181590	1	4	17	0	1	0	0	0	0	0	0	0	7804	667	23	4		4	INF2	14	105181590	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2277239	105181590	2167950	650	35247											
C15orf2	23742	broad.mit.edu	37	chr15	24921606	24921606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagggcacccagggagacGtggcctccttcagatgcagc	13	15	1	2	rs150016698		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24921606	T	T	24921606	3	4	17	1	0	0	0	0	1	0	0	0	1797	1145	40	3	594	3	C15orf2	15	24921606	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08		24921606	77609786	651	35248											
SNRPN	6638	broad.mit.edu	37	chr15	25223019	25223019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacagtacccaccaggacGgggcactccgcccccacccg	9	20	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25223019	T	T	25223019	3	4	17	1	0	0	0	0	1	0	0	0	14984	1116	39	1	533	1	SNRPN	15	25223019	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	301413	25223019	77308373	652	35249											
RPUSD2	27079	broad.mit.edu	37	chr15	40864089	40864089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaattcacgagcaggttcGggaccggcaggtgagtcagg	17	8	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40864089	T	T	40864089	3	4	17	1	0	0	0	0	1	0	0	0	13778	1116	39	1	899	1	RPUSD2	15	40864089	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	15641070	40864089	61667303	653	35250											
SPTBN5	51332	broad.mit.edu	37	chr15	42156074	42156074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccttccacccctcttccCggccctttggttctccccag	7	20	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42156074	A	A	42156074	1	1	17	0	1	0	0	0	0	0	0	0	15240	667	23	1		1	SPTBN5	15	42156074	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1291985	42156074	60375318	654	35251											
TMEM87A	25963	broad.mit.edu	37	chr15	42565651	42565651	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctcttccggttcgtccCgccttcttccggctctgctc	7	20	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42565651	A	A	42565651	1	1	17	0	1	0	0	0	0	0	0	0	16333	667	23	1		1	TMEM87A	15	42565651	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	409577	42565651	59965741	655	35252											
UBR1	197131	broad.mit.edu	37	chr15	43244543	43244543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagctccaacctcttcccCgttcacaatttcctggcagc	6	17	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43244543	A	A	43244543	3	1	17	1	0	0	0	0	1	0	0	0	17027	652	23	1	322	1	UBR1	15	43244543	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	678892	43244543	59286849	656	35253											
TGM7	116179	broad.mit.edu	37	chr15	43568989	43568989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacaggagactgaggagGgtcctgtgacgccatggggc	17	10	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43568989	T	T	43568989	1	4	17	0	1	0	0	0	0	0	0	0	15958	1247	43	2		2	TGM7	15	43568989	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	324446	43568989	58962403	657	35254											
FBN1	2200	broad.mit.edu	37	chr15	48936742	48936742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggagagtcatcctgccCgttgttctggatcttgaaac	11	10	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48936742	A	A	48936742	1	1	17	0	1	0	0	0	0	0	0	0	5759	667	23	1		1	FBN1	15	48936742	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5367753	48936742	53594650	658	35255											
CSNK1G1	53944	broad.mit.edu	37	chr15	64506177	64506177	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgtgttttttggtttcGgggtcaatgtattccttggc	13	5	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64506177	T	T	64506177	2	4	17	1	0	0	0	0	0	0	0	1	3988	1103	39	1		1	CSNK1G1	15	64506177	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	15569435	64506177	38025215	659	35256											
CILP	8483	broad.mit.edu	37	chr15	65499179	65499179	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggccaggccgctgctccCtgttgaggcaccagaaaccc	11	16	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65499179	G	G	65499179	3	3	17	1	0	0	0	0	1	0	0	0	3460	681	24	4	3213	4	CILP	15	65499179	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	993002	65499179	37032213	660	35257											
C15orf59	388135	broad.mit.edu	37	chr15	74032550	74032550	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcatcgtcacagcacAgagcatggtagagcactttg	9	13	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74032550	G	G	74032550	3	3	17	1	0	0	0	0	1	0	0	0	1820	188	7	5	295	5	C15orf59	15	74032550	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	8533371	74032550	28498842	661	35258											
SEMA7A	8482	broad.mit.edu	37	chr15	74706921	74706921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcacatgaaaggtctcccCgtggctggcttgcatgcggt	13	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74706921	A	A	74706921	3	1	17	1	0	0	0	0	1	0	0	0	14156	652	23	1	759	1	SEMA7A	15	74706921	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	674371	74706921	27824471	662	35259											
SCAPER	49855	broad.mit.edu	37	chr15	76866634	76866634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgctgaagcctttaataCcaaatgaaaggaaagaatga	8	6	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76866634	A	A	76866634	1	1	17	0	1	0	0	0	0	0	0	0	13990	522	18	3		3	SCAPER	15	76866634	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2159713	76866634	25664758	663	35260											
KLHL25	64410	broad.mit.edu	37	chr15	86313007	86313007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggaccccgtgctgctcCgcgacttgcgggtctcatgg	13	14	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86313007	A	A	86313007	3	1	17	1	0	0	0	0	1	0	0	0	8451	652	23	1	1738	1	KLHL25	15	86313007	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	9446373	86313007	16218385	664	35261											
AGBL1	123624	broad.mit.edu	37	chr15	86813215	86813215	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaccagcagtggttctattTcaaagtgagcggtatgcagg	13	8	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86813215	C	C	86813215	3	2	17	1	0	0	0	0	1	0	0	0	375	1783	62	5	1812	5	AGBL1	15	86813215	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	500208	86813215	15718177	665	35262											
SPATA8	145946	broad.mit.edu	37	chr15	97326791	97326791	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgttcagaccaggctgctCcatctccgctaagcccaggg	10	15	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97326791	A	A	97326791	1	1	17	0	1	0	0	0	0	0	0	0	15131	870	30	3		3	SPATA8	15	97326791	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	10513576	97326791	5204601	666	35263											
LUC7L	55692	broad.mit.edu	37	chr16	239997	239997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttcggtcccgggaagccCgacgatgtccccggctgtgg	14	15	0	0	rs146490197		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239997	A	A	239997	3	1	17	1	0	0	0	0	1	0	0	0	9169	652	23	1	183	1	LUC7L	16	239997	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08		239997	90114756	667	35264											
PTX4	390667	broad.mit.edu	37	chr16	1537689	1537689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctctgggccttgtgtgCcttcctttcccgggcccgct	11	17	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1537689	A	A	1537689	3	1	17	1	0	0	0	0	1	0	0	0	12931	739	26	3	1019	3	PTX4	16	1537689	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1297692	1537689	88817064	668	35265											
TELO2	9894	broad.mit.edu	37	chr16	1552599	1552599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcggtgaggcctcggcGggcagctgggtccgacaggt	18	12	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1552599	T	T	1552599	1	4	17	0	1	0	0	0	0	0	0	0	15879	1131	39	1		1	TELO2	16	1552599	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	14910	1552599	88802154	669	35266											
HS3ST6	64711	broad.mit.edu	37	chr16	1962127	1962127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacatggcgtggatgcggcGgggggcctctcgcgtcacga	19	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1962127	T	T	1962127	3	4	17	1	0	0	0	0	1	0	0	0	7436	1116	39	1	539	1	HS3ST6	16	1962127	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	409528	1962127	88392626	670	35267											
MLST8	64223	broad.mit.edu	37	chr16	2258359	2258359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcagggcctgctggcccGggaggggacctgcctgggct	19	13	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2258359	T	T	2258359	1	4	17	0	1	0	0	0	0	0	0	0	9727	1131	39	1		1	MLST8	16	2258359	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	296232	2258359	88096394	671	35268											
DCI	1632	broad.mit.edu	37	chr16	2296886	2296886	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaatgacaccgcggaagcTcttgtcattctccagcttct	8	13	4	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2296886	A	A	2296886	3	1	17	1	0	0	0	0	1	0	0	0	4322	1551	54	5	660	5	DCI	16	2296886	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	38527	2296886	88057867	672	35269											
MMP25	64386	broad.mit.edu	37	chr16	3107056	3107056	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgaggggaccgacctgttTgccgtggctgtccatgagtt	16	10	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3107056	G	G	3107056	3	3	17	1	0	0	0	0	1	0	0	0	9756	1809	63	5	702	5	MMP25	16	3107056	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	810170	3107056	87247697	673	35270											
IL32	9235	broad.mit.edu	37	chr16	3117636	3117636	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggatttcccctcaggCaccaggtcacatgtccccgc	11	15	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3117636	T	T	3117636	1	4	17	0	1	0	0	0	0	0	0	0	7762	725	25	4		4	IL32	16	3117636	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	10580	3117636	87237117	674	35271											
A2BP1	54715	broad.mit.edu	37	chr16	7759205	7759205	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccagctgggacctcagtaCgggttgacgtcctctcactt	10	15	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7759205	G	G	7759205	1	3	17	0	1	0	0	0	0	0	0	0	3	551	19	4		4	A2BP1	16	7759205	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	4641569	7759205	82595548	675	35272											
GRIN2A	2903	broad.mit.edu	37	chr16	9934526	9934526	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagcagaaggtgagacGgtgccattacttcttgaaac	11	7	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9934526	A	A	9934526	2	1	17	1	0	0	0	0	0	0	0	1	6845	1103	39	4		4	GRIN2A	16	9934526	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	2175321	9934526	80420227	676	35273											
TEKT5	146279	broad.mit.edu	37	chr16	10788207	10788207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattggccgcgcactccagcCgcctcttgaccgtctccaag	9	18	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10788207	A	A	10788207	3	1	17	1	0	0	0	0	1	0	0	0	15878	652	23	1	961	1	TEKT5	16	10788207	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	853681	10788207	79566546	677	35274											
PDILT	204474	broad.mit.edu	37	chr16	20410442	20410442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagcaccatgaggaagcGggtctggttcagcatctggg	15	8	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20410442	T	T	20410442	3	4	17	1	0	0	0	0	1	0	0	0	11768	1116	39	1	1617	1	PDILT	16	20410442	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	9622235	20410442	69944311	678	35275											
ACSM2A	123876	broad.mit.edu	37	chr16	20486735	20486735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgcccccattgtttacCggatgttgctacagcaggat	12	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20486735	A	A	20486735	2	1	17	1	0	0	0	0	0	0	0	1	183	643	23	1		1	ACSM2A	16	20486735	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	76293	20486735	69868018	679	35276											
ACSM2B	348158	broad.mit.edu	37	chr16	20551969	20551969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgacttgggagctcaaagGccttacctttcttgggtact	11	9	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20551969	T	T	20551969	1	4	17	0	1	0	0	0	0	0	0	0	184	1218	42	3		3	ACSM2B	16	20551969	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	65234	20551969	69802784	680	35277											
THUMPD1	55623	broad.mit.edu	37	chr16	20748497	20748497	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtattttctaaacaacatgTaatctttcacaacactcagg	4	9	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20748497	G	G	20748497	3	3	17	1	0	0	0	0	1	0	0	0	16005	1638	57	5	298	5	THUMPD1	16	20748497	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	196528	20748497	69606256	681	35278											
IGSF6	10261	broad.mit.edu	37	chr16	21655614	21655614	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggatttgacttactttGgagaggagtatgaaggccac	13	5	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21655614	T	T	21655614	2	4	17	1	0	0	0	0	0	0	0	1	7673	1335	47	2		2	IGSF6	16	21655614	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	907117	21655614	68699139	682	35279											
USP31	57478	broad.mit.edu	37	chr16	23096251	23096251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgatgatgacgctccCtttgcagacgaacactttct	10	11	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23096251	A	A	23096251	3	1	17	1	0	0	0	0	1	0	0	0	17189	681	24	2	2322	2	USP31	16	23096251	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1440637	23096251	67258502	683	35280											
PLK1	5347	broad.mit.edu	37	chr16	23692542	23692542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaattgtcatatctttccCtgtcactggtgtatcctgtc	6	12	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23692542	A	A	23692542	1	1	17	0	1	0	0	0	0	0	0	0	12189	696	24	2		2	PLK1	16	23692542	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	596291	23692542	66662211	684	35281											
ERN2	10595	broad.mit.edu	37	chr16	23713904	23713904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagggaggttcttctccCgttcatcctctttccagccc	9	14	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23713904	A	A	23713904	1	1	17	0	1	0	0	0	0	0	0	0	5280	667	23	1		1	ERN2	16	23713904	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	21362	23713904	66640849	685	35282											
CACNG3	10368	broad.mit.edu	37	chr16	24373177	24373177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaacaggcgcaccacgcCcgtctgaactgacctctgac	10	17	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24373177	A	A	24373177	3	1	17	1	0	0	0	0	1	0	0	0	2584	623	22	2	955	2	CACNG3	16	24373177	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	659273	24373177	65981576	686	35283											
HS3ST4	9951	broad.mit.edu	37	chr16	26147079	26147079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaccccgtgaccagggCcatctctgactacacgcaga	10	14	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26147079	A	A	26147079	3	1	17	1	0	0	0	0	1	0	0	0	7434	739	26	3	887	3	HS3ST4	16	26147079	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1773902	26147079	64207674	687	35284											
GSG1L	146395	broad.mit.edu	37	chr16	27840058	27840058	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtggccactgaggccaggcCgtgggctttagagtccccgt	16	12	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27840058	G	G	27840058	1	3	17	0	1	0	0	0	0	0	0	0	6887	667	23	4		4	GSG1L	16	27840058	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1692979	27840058	62514695	688	35285											
ATP2A1	487	broad.mit.edu	37	chr16	28913886	28913886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctgacccccgactcccCtctctccaccacaggctatg	6	21	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28913886	A	A	28913886	1	1	17	0	1	0	0	0	0	0	0	0	1140	696	24	2		2	ATP2A1	16	28913886	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1073828	28913886	61440867	689	35286											
HIRIP3	8479	broad.mit.edu	37	chr16	30005857	30005857	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttgctgtcctctgaacGggttctgcctcgctctcctc	8	15	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30005857	T	T	30005857	2	4	17	1	0	0	0	0	0	0	0	1	7188	1103	39	1		1	HIRIP3	16	30005857	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1091971	30005857	60348896	690	35287											
AHSP	51327	broad.mit.edu	37	chr16	31539817	31539817	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtctctgaagaagacatggtGactgtggtggaggactggat	16	5	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31539817	C	C	31539817	2	2	17	1	0	0	0	0	0	0	0	1	421	1277	45	4		4	AHSP	16	31539817	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1533960	31539817	58814936	691	35288											
ADCY7	113	broad.mit.edu	37	chr16	50345611	50345611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcgcattcagtggcaccCctagctgttcctggaaggac	10	14	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50345611	A	A	50345611	3	1	17	1	0	0	0	0	1	0	0	0	299	623	22	2	2436	2	ADCY7	16	50345611	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	18805794	50345611	40009142	692	35289											
ADCY7	113	broad.mit.edu	37	chr16	50349373	50349373	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagctgaggacttactttgTctgtacggacactgccaagt	11	10	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50349373	C	C	50349373	3	2	17	1	0	0	0	0	1	0	0	0	299	1667	58	5	3298	5	ADCY7	16	50349373	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	3762	50349373	40005380	693	35290											
CETP	1071	broad.mit.edu	37	chr16	57015516	57015516	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggatgttacaggaggGggcccaatggagggtcaaat	17	7	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57015516	A	A	57015516	1	1	17	0	1	0	0	0	0	0	0	0	3307	1247	43	4		4	CETP	16	57015516	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	6666143	57015516	33339237	694	35291											
CBFB	865	broad.mit.edu	37	chr16	67116323	67116323	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatagtttaattttgtctttCatttttaaaaagttgtactc	4	4	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67116323	A	A	67116323	1	1	17	0	1	0	0	0	0	0	0	0	2725	841	29	3		3	CBFB	16	67116323	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	10100807	67116323	23238430	695	35292											
FHOD1	29109	broad.mit.edu	37	chr16	67264664	67264664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccggcgctccagctgccCcaggttctcagtcagctgtt	11	16	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67264664	A	A	67264664	3	1	17	1	0	0	0	0	1	0	0	0	5939	623	22	2	816	2	FHOD1	16	67264664	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	148341	67264664	23090089	696	35293											
FAM65A	79567	broad.mit.edu	37	chr16	67576722	67576722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccttataaatgtaagccCttccacttctctagaacttg	4	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67576722	A	A	67576722	3	1	17	1	0	0	0	0	1	0	0	0	5650	681	24	2	2079	2	FAM65A	16	67576722	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	312058	67576722	22778031	697	35294											
ZFP90	146198	broad.mit.edu	37	chr16	68598006	68598006	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacagcacatctctcactcAagatgaaagcactcttaccg	6	14	4	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68598006	T	T	68598006	3	4	17	1	0	0	0	0	1	0	0	0	17780	130	5	5	1330	5	ZFP90	16	68598006	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	1021284	68598006	21756747	698	35295											
NQO1	1728	broad.mit.edu	37	chr16	69760297	69760297	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacaggcaccagtgctcgaGagacgaccgccaagcacccc	10	18	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69760297	A	A	69760297	1	1	17	0	1	0	0	0	0	0	0	0	10706	957	33	4		4	NQO1	16	69760297	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1162291	69760297	20594456	699	35296											
WWP2	11060	broad.mit.edu	37	chr16	69969913	69969913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttccctgcccccttgcccCaccgcgctgataggagggac	11	17	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69969913	A	A	69969913	1	1	17	0	1	0	0	0	0	0	0	0	17543	609	21	2		2	WWP2	16	69969913	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	209616	69969913	20384840	700	35297											
ZFHX3	463	broad.mit.edu	37	chr16	72821947	72821947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcagggtctttgtctgGggaaggagccccggggggga	20	7	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72821947	T	T	72821947	3	4	17	1	0	0	0	0	1	0	0	0	17760	1232	43	2	887	2	ZFHX3	16	72821947	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2852034	72821947	17532806	701	35298											
ZFHX3	463	broad.mit.edu	37	chr16	72984794	72984794	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctggatgaagctctcgccCaggttcatcagctcctctga	10	13	5	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72984794	G	G	72984794	2	3	17	1	0	0	0	0	0	0	0	1	17760	581	21	4		4	ZFHX3	16	72984794	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	162847	72984794	17369959	702	35299											
GAN	8139	broad.mit.edu	37	chr16	81388198	81388198	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttgccacagaatacctGgagactcatttccgagacgt	8	12	1	3	rs143704621		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81388198	T	T	81388198	2	4	17	1	0	0	0	0	0	0	0	1	6294	1335	47	2		2	GAN	16	81388198	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	8403404	81388198	8966555	703	35300											
ANKRD11	29123	broad.mit.edu	37	chr16	89356943	89356943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatggggggaggctcaggGctccaatggggggaggctca	19	9	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89356943	A	A	89356943	1	1	17	0	1	0	0	0	0	0	0	0	639	1218	42	4		4	ANKRD11	16	89356943	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	7968745	89356943	997810	704	35301											
MYO1C	4641	broad.mit.edu	37	chr17	1383807	1383807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggaaagcgagggtcccGgaagaggcctcacctccact	14	12	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1383807	T	T	1383807	1	4	17	0	1	0	0	0	0	0	0	0	10164	1131	39	1		1	MYO1C	17	1383807	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08		1383807	79811403	705	35302											
CXCL16	58191	broad.mit.edu	37	chr17	4642104	4642104	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatagacaccgatggtaaGctctcaggtgtttccggaga	12	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4642104	A	A	4642104	3	1	17	1	0	0	0	0	1	0	0	0	4116	971	34	4	589	4	CXCL16	17	4642104	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	3258297	4642104	76553106	706	35303											
NLRP1	22861	broad.mit.edu	37	chr17	5415753	5415753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagggcggcagggcaatcCgcaattccacgaccaggttt	12	12	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5415753	A	A	5415753	1	1	17	0	1	0	0	0	0	0	0	0	10566	667	23	1		1	NLRP1	17	5415753	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	773649	5415753	75779457	707	35304											
KIAA0753	9851	broad.mit.edu	37	chr17	6526310	6526310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcccagttccttacaCcgagcaggaagtggatgctc	12	12	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6526310	A	A	6526310	2	1	17	1	0	0	0	0	0	0	0	1	8261	494	18	3		3	KIAA0753	17	6526310	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1110557	6526310	74668900	708	35305											
COPS3	8533	broad.mit.edu	37	chr17	17179439	17179439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcttcgcaaggagttccCcactcttgttgatcagttca	8	11	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17179439	A	A	17179439	3	1	17	1	0	0	0	0	1	0	0	0	3766	623	22	2	1220	2	COPS3	17	17179439	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	10653129	17179439	64015771	709	35306											
KIAA0100	9703	broad.mit.edu	37	chr17	26965135	26965135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagaagcagacggatcCcattagaagtatgcaggcgc	13	8	0	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26965135	A	A	26965135	1	1	17	0	1	0	0	0	0	0	0	0	8224	638	22	2		2	KIAA0100	17	26965135	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	9785696	26965135	54230075	710	35307											
NEK8	284086	broad.mit.edu	37	chr17	27064382	27064382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgcacctatctctgaccGgtacagccctgagcttcgcc	8	16	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27064382	T	T	27064382	3	4	17	1	0	0	0	0	1	0	0	0	10425	1116	39	1	695	1	NEK8	17	27064382	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	99247	27064382	54130828	711	35308											
TRAF4	9618	broad.mit.edu	37	chr17	27076266	27076266	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcagtggtgagggcacaCacctctcactgtacattcgt	11	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27076266	G	G	27076266	3	3	17	1	0	0	0	0	1	0	0	0	16567	478	17	4	1110	4	TRAF4	17	27076266	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	11884	27076266	54118944	712	35309											
TIAF1	9220	broad.mit.edu	37	chr17	27401083	27401083	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgtctgcgtaggcttgCtcaacccagcccagcagcac	9	16	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27401083	T	T	27401083	2	4	17	1	0	0	0	0	0	0	0	1	16011	796	28	4		4	TIAF1	17	27401083	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	324817	27401083	53794127	713	35310											
NF1	4763	broad.mit.edu	37	chr17	29663769	29663769	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacgctacatgctgatgctGtccttcaacaattcccttga	7	13	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29663769	C	C	29663769	2	2	17	1	0	0	0	0	0	0	0	1	10451	1364	48	4		4	NF1	17	29663769	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	2262686	29663769	51531441	714	35311											
MYO19	80179	broad.mit.edu	37	chr17	34864956	34864956	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctgctgttgatcactgaTaccagccagtcaaacaacct	7	12	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34864956	C	C	34864956	2	2	17	1	0	0	0	0	0	0	0	1	10161	1393	49	5		5	MYO19	17	34864956	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	5201187	34864956	46330254	715	35312											
ACACA	31	broad.mit.edu	37	chr17	35766256	35766256	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgagaccgtatgtgtaacCtgctttgtgcaatgtctggc	11	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35766256	T	T	35766256	1	4	17	0	1	0	0	0	0	0	0	0	106	696	24	4		4	ACACA	17	35766256	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	901300	35766256	45428954	716	35313											
STAC2	342667	broad.mit.edu	37	chr17	37370512	37370512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagatcattgttctcctgGggcagaaacttgtagagtgc	12	9	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37370512	T	T	37370512	2	4	17	1	0	0	0	0	0	0	0	1	15358	1219	43	2		2	STAC2	17	37370512	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1604256	37370512	43824698	717	35314											
IKZF3	22806	broad.mit.edu	37	chr17	37947691	37947691	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtgtcctaagatgcccCgtgagcgcatctcttctttg	10	11	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37947691	A	A	37947691	2	1	17	1	0	0	0	0	0	0	0	1	7686	639	23	1		1	IKZF3	17	37947691	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	577179	37947691	43247519	718	35315											
GAST	2520	broad.mit.edu	37	chr17	39871829	39871829	+	Frame_Shift_Del	DEL	G	-	-													gacctggagctaccctggctGgagcagcagggcccagcctc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39871829	-	-	39871829	7	5	17	1	0	1	0	1	0	0	0	0	6314	1335	47	0	143	0	GAST	17	39871829	Frame_Shift_Del	DEL	G	TCGA-05-4417-01A-22D-1855-08	1924138	39871829	41323381	719	35316											
MPP3	4356	broad.mit.edu	37	chr17	41891509	41891509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgctgagctccctcccCacctgctccagggaggaaac	9	18	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41891509	A	A	41891509	1	1	17	0	1	0	0	0	0	0	0	0	9829	609	21	2		2	MPP3	17	41891509	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2019680	41891509	39303701	720	35317											
C17orf53	78995	broad.mit.edu	37	chr17	42225773	42225773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtattggctaaaaaagcccGggtagttgatctgagtggat	13	5	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42225773	T	T	42225773	3	4	17	1	0	0	0	0	1	0	0	0	1878	1116	39	1	612	1	C17orf53	17	42225773	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	334264	42225773	38969437	721	35318											
ACBD4	79777	broad.mit.edu	37	chr17	43214280	43214280	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttacccccaaccctgcctAtctttggcccctgactgggc	8	17	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43214280	G	G	43214280	1	3	17	0	1	0	0	0	0	0	0	0	124	464	16	5		5	ACBD4	17	43214280	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	988507	43214280	37980930	722	35319											
SNX11	29916	broad.mit.edu	37	chr17	46196270	46196270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagccagaagttcttaagaGgatggggaatggagagcagt	16	4	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46196270	T	T	46196270	1	4	17	0	1	0	0	0	0	0	0	0	14996	1015	35	2		2	SNX11	17	46196270	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2981990	46196270	34998940	723	35320											
DLX4	1748	broad.mit.edu	37	chr17	48046906	48046906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagacctcgcccctgtccCgtcggtagcggctgcctacc	10	20	0	1	rs145781048	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48046906	A	A	48046906	3	1	17	1	0	0	0	0	1	0	0	0	4613	652	23	1	76	1	DLX4	17	48046906	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1850636	48046906	33148304	724	35321											
SGCA	6442	broad.mit.edu	37	chr17	48244690	48244690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcccctgcccaggactgaGgctggcctgtgtgtttggga	14	11	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48244690	T	T	48244690	1	4	17	0	1	0	0	0	0	0	0	0	14312	1015	35	2		2	SGCA	17	48244690	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	197784	48244690	32950520	725	35322											
CACNA1G	8913	broad.mit.edu	37	chr17	48680482	48680482	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtcatcgacattctggtgtCcatggtctctgacagcggca	11	12	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48680482	T	T	48680482	3	4	17	1	0	0	0	0	1	0	0	0	2570	855	30	4	4173	4	CACNA1G	17	48680482	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	435792	48680482	32514728	726	35323											
SPAG9	9043	broad.mit.edu	37	chr17	49067154	49067154	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgtcttcagctgacccCgcattcccttctgtagcttc	7	15	3	1	rs146477955	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49067154	A	A	49067154	2	1	17	1	0	0	0	0	0	0	0	1	15101	639	23	1		1	SPAG9	17	49067154	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	386672	49067154	32128056	727	35324											
ACE	1636	broad.mit.edu	37	chr17	61558409	61558409	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcatgaagaagcaggcacAgccaggcagggagccaagct	14	10	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61558409	T	T	61558409	1	4	17	0	1	0	0	0	0	0	0	0	136	203	7	5		5	ACE	17	61558409	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	12491255	61558409	19636801	728	35325											
CSHL1	1444	broad.mit.edu	37	chr17	61987647	61987647	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcacgggctccagccgcgActcgatgagcagcagggaga	15	14	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61987647	T	T	61987647	3	4	17	1	0	0	0	0	1	0	0	0	3976	275	10	5	330	5	CSHL1	17	61987647	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	429238	61987647	19207563	729	35326											
CD79B	974	broad.mit.edu	37	chr17	62006601	62006601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctcactcctggcctggGtgctcacctacagaccactt	9	16	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62006601	T	T	62006601	3	4	17	1	0	0	0	0	1	0	0	0	3067	1252	44	3	18	3	CD79B	17	62006601	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	18954	62006601	19188609	730	35327											
ABCA9	10350	broad.mit.edu	37	chr17	66982325	66982325	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtgatggcgatcattgcGtcccctttcctgagaccttt	10	12	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66982325	A	A	66982325	2	1	17	1	0	0	0	0	0	0	0	1	39	1136	40	4		4	ABCA9	17	66982325	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	4975724	66982325	14212885	731	35328											
SDK2	54549	broad.mit.edu	37	chr17	71427750	71427750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgatgaggaggctgccCgactccaggggtgtgaagcg	19	9	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71427750	A	A	71427750	2	1	17	1	0	0	0	0	0	0	0	1	14082	639	23	1		1	SDK2	17	71427750	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	4445425	71427750	9767460	732	35329											
DNAI2	64446	broad.mit.edu	37	chr17	72297334	72297334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccttgctgtcccttcccCgacttgcattgacagggcag	10	15	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72297334	A	A	72297334	1	1	17	0	1	0	0	0	0	0	0	0	4650	667	23	1		1	DNAI2	17	72297334	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	869584	72297334	8897876	733	35330											
DNAI2	64446	broad.mit.edu	37	chr17	72310295	72310295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagaccaggtggtggaGgagggagaggaagcagcggg	22	4	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72310295	T	T	72310295	3	4	17	1	0	0	0	0	1	0	0	0	4650	991	35	2	1804	2	DNAI2	17	72310295	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	12961	72310295	8884915	734	35331											
CDR2L	30850	broad.mit.edu	37	chr17	72999924	72999924	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggccggagtgcggcacgccGgcgtgcagacctcgcgcccc	17	17	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72999924	C	C	72999924	3	2	17	1	0	0	0	0	1	0	0	0	3203	1116	39	4	1171	4	CDR2L	17	72999924	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	689629	72999924	8195286	735	35332											
ITGB4	3691	broad.mit.edu	37	chr17	73747115	73747122	+	Frame_Shift_Del	DEL	GCTGGGCT	-	-													ctccacggtgacccagctgaGctgggctgagccggctgaga							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73747122	-	-	73747115	7	5	17	1	0	1	0	1	0	0	0	0	7967	971	34	0	3830	0	ITGB4	17	73747115	Frame_Shift_Del	DEL	GCTGGGCT	TCGA-05-4417-01A-22D-1855-08	747191	73747115	7448095	736	35333											
ITGB4	3691	broad.mit.edu	37	chr17	73750604	73750604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggcccagcctgccccacGgggcccgggtctggggcagg	18	16	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73750604	T	T	73750604	1	4	17	0	1	0	0	0	0	0	0	0	7967	1131	39	1		1	ITGB4	17	73750604	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3489	73750604	7444606	737	35334											
RHBDF2	79651	broad.mit.edu	37	chr17	74470329	74470329	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccccagggctcagtctcatCtatgggggtctgggaaaggt	14	10	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74470329	T	T	74470329	1	4	17	0	1	0	0	0	0	0	0	0	13429	928	32	4		4	RHBDF2	17	74470329	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	719725	74470329	6724881	738	35335											
BAHCC1	57597	broad.mit.edu	37	chr17	79411612	79411612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtcagtgatccaagggcGggggctggcctggggctgat	19	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79411612	T	T	79411612	1	4	17	0	1	0	0	0	0	0	0	0	1301	1131	39	1		1	BAHCC1	17	79411612	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	4941283	79411612	1783598	739	35336											
SLC25A10	1468	broad.mit.edu	37	chr17	79671816	79671816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcatgtgccgtggtccCgtatctcaggttctgcagct	12	13	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79671816	A	A	79671816	1	1	17	0	1	0	0	0	0	0	0	0	14586	667	23	1		1	SLC25A10	17	79671816	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	260204	79671816	1523394	740	35337											
TYMS	7298	broad.mit.edu	37	chr18	662352	662352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaatgccttccatttccCgggtgcccttcctagcatgt	8	14	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	662352	A	A	662352	1	1	17	0	1	0	0	0	0	0	0	0	16938	667	23	1		1	TYMS	18	662352	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08		662352	77414896	741	35338											
CEP192	55125	broad.mit.edu	37	chr18	13100550	13100550	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtaattcaaatgtctgctGatatattgagtctaatgctt	7	5	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13100550	T	T	13100550	1	4	17	0	1	0	0	0	0	0	0	0	3281	1305	45	3		3	CEP192	18	13100550	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	12438198	13100550	64976698	742	35339											
ANKRD30B	374860	broad.mit.edu	37	chr18	14791502	14791502	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattagaaggtaagaaccatTttttaattaaaaagtcattt	5	3	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14791502	C	C	14791502	1	2	17	0	1	0	0	0	0	0	0	0	659	1856	64	5		5	ANKRD30B	18	14791502	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	1690952	14791502	63285746	743	35340											
ROCK1	6093	broad.mit.edu	37	chr18	18534673	18534673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggtatagaaatcactaCacataagttagttcattgag	7	6	2	2	rs147691909	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18534673	A	A	18534673	1	1	17	0	1	0	0	0	0	0	0	0	13628	493	17	3		3	ROCK1	18	18534673	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3743171	18534673	59542575	744	35341											
NPC1	4864	broad.mit.edu	37	chr18	21131617	21131617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcccaacacaagccacGggaacactggtccaccaaac	7	17	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21131617	T	T	21131617	3	4	17	1	0	0	0	0	1	0	0	0	10665	1116	39	1	2272	1	NPC1	18	21131617	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2596944	21131617	56945631	745	35342											
IMPACT	55364	broad.mit.edu	37	chr18	22020612	22020612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaactaatttcttttgaGgagagtgggttggtagtatt	11	3	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22020612	T	T	22020612	1	4	17	0	1	0	0	0	0	0	0	0	7794	1015	35	2		2	IMPACT	18	22020612	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	888995	22020612	56056636	746	35343											
CDH2	1000	broad.mit.edu	37	chr18	25616324	25616324	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataagcattaaattccttgTttaaaatataaaatgtactt	3	5	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25616324	C	C	25616324	1	2	17	0	1	0	0	0	0	0	0	0	3135	1740	60	5		5	CDH2	18	25616324	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	3595712	25616324	52460924	747	35344											
C18orf34	374864	broad.mit.edu	37	chr18	30977231	30977231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagtcaaatattctgcCctatattgcactagtaagga	7	9	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30977231	A	A	30977231	1	1	17	0	1	0	0	0	0	0	0	0	1920	638	22	2		2	C18orf34	18	30977231	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	5360907	30977231	47100017	748	35345											
ASXL3	80816	broad.mit.edu	37	chr18	31326637	31326637	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaacaaatagaataatgCagtggtttctatcatgctaa	6	7	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31326637	A	A	31326637	1	1	17	0	1	0	0	0	0	0	0	0	1072	725	25	3		3	ASXL3	18	31326637	3'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	349406	31326637	46750611	749	35346											
PIAS2	9063	broad.mit.edu	37	chr18	44424712	44424712	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttacttagtgctctggaatGatcagggtttctaatacctt	8	8	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44424712	A	A	44424712	3	1	17	1	0	0	0	0	1	0	0	0	11971	1290	45	4	1020	4	PIAS2	18	44424712	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	13098075	44424712	33652536	750	35347											
DCC	1630	broad.mit.edu	37	chr18	50741882	50741882	+	Intron	DEL	G	-	-													tatttttctttcaagattttGgcagtaactgtgacaatttg							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50741882	-	-	50741882	6	5	17	0	1	1	0	1	0	0	0	0	4315	1363	47	0		0	DCC	18	50741882	Intron	DEL	G	TCGA-05-4417-01A-22D-1855-08	6317170	50741882	27335366	751	35348											
SERPINB13	5275	broad.mit.edu	37	chr18	61260167	61260167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgcagccgatgaaagtcGaaagaagattaattcctggg	11	6	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61260167	T	T	61260167	3	4	17	1	0	0	0	0	1	0	0	0	14213	1058	37	3	448	3	SERPINB13	18	61260167	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	10518285	61260167	16817081	752	35349											
SERPINB4	6318	broad.mit.edu	37	chr18	61305167	61305167	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagatactgagagaccgtggCtccaggtcatgcctgagagg	14	9	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61305167	T	T	61305167	3	4	17	1	0	0	0	0	1	0	0	0	14216	797	28	4	217	4	SERPINB4	18	61305167	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	45000	61305167	16772081	753	35350											
CCDC102B	79839	broad.mit.edu	37	chr18	66504227	66504227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgaagaacttcgcctgcGggagcttgaagaagtcaagg	14	7	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66504227	T	T	66504227	3	4	17	1	0	0	0	0	1	0	0	0	2763	1116	39	1	229	1	CCDC102B	18	66504227	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	5199060	66504227	11573021	754	35351											
STK11	6794	broad.mit.edu	37	chr19	1220410	1220410	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacggcctggagtacctgcAtagccagggcattgtgcaca	13	11	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1220410	G	G	1220410	3	3	17	1	0	0	0	0	1	0	0	0	15405	217	8	5	517	5	STK11	19	1220410	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08		1220410	57908573	755	35352											
AMH	268	broad.mit.edu	37	chr19	2251775	2251775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagtccgaccgcaaccCgcgctacggcaaccacgtgg	11	18	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2251775	A	A	2251775	3	1	17	1	0	0	0	0	1	0	0	0	572	652	23	1	1520	1	AMH	19	2251775	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1031365	2251775	56877208	756	35353											
FSD1	79187	broad.mit.edu	37	chr19	4307868	4307868	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccctcctttggtgcctGgtatccacagaaccagctgg	10	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4307868	A	A	4307868	1	1	17	0	1	0	0	0	0	0	0	0	6130	1363	47	4		4	FSD1	19	4307868	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2056093	4307868	54821115	757	35354											
HDGFRP2	84717	broad.mit.edu	37	chr19	4475497	4475497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaatgtaaagacaagtacGggaagcccaacaagaggaaa	10	7	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4475497	T	T	4475497	3	4	17	1	0	0	0	0	1	0	0	0	7087	1116	39	1	215	1	HDGFRP2	19	4475497	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	167629	4475497	54653486	758	35355											
RANBP3	8498	broad.mit.edu	37	chr19	5921197	5921197	+	Intron	DEL	C	-	-													ggacccggccacagcccccgCcgtcggcagctcacctagtc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5921197	-	-	5921197	6	5	17	0	1	1	0	1	0	0	0	0	13137	754	26	0		0	RANBP3	19	5921197	Intron	DEL	C	TCGA-05-4417-01A-22D-1855-08	1445700	5921197	53207786	759	35356											
MUC16	94025	broad.mit.edu	37	chr19	8996403	8996403	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggctcagctcccaataCagctgctctctgtccagcct	8	16	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8996403	A	A	8996403	2	1	17	1	0	0	0	0	0	0	0	1	10067	465	17	3		3	MUC16	19	8996403	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	3075206	8996403	50132580	760	35357											
MUC16	94025	broad.mit.edu	37	chr19	9070212	9070212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatacccattggagatgtgGctttggatgtgtgtgaatca	13	5	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9070212	T	T	9070212	3	4	17	1	0	0	0	0	1	0	0	0	10067	1203	42	3	26617	3	MUC16	19	9070212	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	73809	9070212	50058771	761	35358											
MUC16	94025	broad.mit.edu	37	chr19	9089511	9089511	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcatggaggaaagaacGgctgagctgggctttgtctt	16	6	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9089511	T	T	9089511	2	4	17	1	0	0	0	0	0	0	0	1	10067	1103	39	1		1	MUC16	19	9089511	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	19299	9089511	50039472	762	35359											
MUC16	94025	broad.mit.edu	37	chr19	9090058	9090058	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccgatgagtgtgtctgcaGatgtttcttcaagccaaatc	9	10	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9090058	T	T	9090058	3	4	17	1	0	0	0	0	1	0	0	0	10067	942	33	3	42102	3	MUC16	19	9090058	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	547	9090058	50038925	763	35360											
ZNF177	7730	broad.mit.edu	37	chr19	9490795	9490795	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacattcctgggggaaaaAcatccaatggcataaacacg	9	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9490795	T	T	9490795	3	4	17	1	0	0	0	0	1	0	0	0	17872	43	2	5	330	5	ZNF177	19	9490795	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	400737	9490795	49638188	764	35361											
ELAVL3	1995	broad.mit.edu	37	chr19	11565875	11565875	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctggagtgcagtggtGcaatcatggctcactgcagc	14	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11565875	C	C	11565875	1	2	17	0	1	0	0	0	0	0	0	0	5093	1334	46	4		4	ELAVL3	19	11565875	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2075080	11565875	47563108	765	35362											
ZNF439	90594	broad.mit.edu	37	chr19	11976950	11976950	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcatcctgagaacttcttGggaatagagtctaggccccc	11	12	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11976950	T	T	11976950	1	4	17	0	1	0	0	0	0	0	0	0	18038	1363	47	2		2	ZNF439	19	11976950	5'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	411075	11976950	47152033	766	35363											
JUNB	3726	broad.mit.edu	37	chr19	12902575	12902575	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccctccccagaccgcctGggccgcccggatgtgcacta	12	18	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12902575	T	T	12902575	1	4	17	0	1	0	0	0	0	0	0	0	8040	1363	47	2		2	JUNB	19	12902575	5'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	925625	12902575	46226408	767	35364											
ZSWIM4	65249	broad.mit.edu	37	chr19	13939433	13939433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaagactcaggctaaccCccttctccccacccctacct	4	22	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13939433	A	A	13939433	1	1	17	0	1	0	0	0	0	0	0	0	18372	638	22	2		2	ZSWIM4	19	13939433	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1036858	13939433	45189550	768	35365											
EMR2	30817	broad.mit.edu	37	chr19	14854365	14854365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggcaaagtgtgtactGggtcagctcacagagagcag	15	8	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14854365	T	T	14854365	1	4	17	0	1	0	0	0	0	0	0	0	5147	1363	47	2		2	EMR2	19	14854365	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	914932	14854365	44274618	769	35366											
NOTCH3	4854	broad.mit.edu	37	chr19	15295220	15295220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgagggccacagggtgCggggccagcacactcgtcca	14	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15295220	A	A	15295220	3	1	17	1	0	0	0	0	1	0	0	0	10645	768	27	3	4585	3	NOTCH3	19	15295220	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	440855	15295220	43833763	770	35367											
OR10H1	26539	broad.mit.edu	37	chr19	15918683	15918683	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaggtacatgggcgtgtgGaggctgcgctcgctccagac	16	10	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15918683	T	T	15918683	2	4	17	1	0	0	0	0	0	0	0	1	10999	1161	41	3		3	OR10H1	19	15918683	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	623463	15918683	43210300	771	35368											
ABHD8	79575	broad.mit.edu	37	chr19	17405099	17405099	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaggtgcccgcctctacctCggccatgcgctggtcttcct	10	18	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17405099	A	A	17405099	4	1	17	1	0	0	0	0	0	1	0	0	87	893	31	3	180	3	ABHD8	19	17405099	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1486416	17405099	41723884	772	35369											
ZNF253	56242	broad.mit.edu	37	chr19	19976831	19976831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgccgggtccaacgtccCgagagaggggagaggctgtt	18	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19976831	A	A	19976831	1	1	17	0	1	0	0	0	0	0	0	0	17923	667	23	1		1	ZNF253	19	19976831	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2571732	19976831	39152152	773	35370											
ZNF676	163223	broad.mit.edu	37	chr19	22362761	22362761	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttcacatttttagggattCtctccagtatgaattttctt	5	8	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22362761	A	A	22362761	3	1	17	1	0	0	0	0	1	0	0	0	18210	912	32	3	12	3	ZNF676	19	22362761	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2385930	22362761	36766222	774	35371											
ZNF99	7652	broad.mit.edu	37	chr19	22939511	22939511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattcttcacatttgtacGgtttctccccagtatgaatt	5	11	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22939511	T	T	22939511	3	4	17	1	0	0	0	0	1	0	0	0	18333	1116	39	1	456	1	ZNF99	19	22939511	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	576750	22939511	36189472	775	35372											
ZNF91	7644	broad.mit.edu	37	chr19	23557440	23557440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtattaaagttttccttacCcaggaaggccaggtttctgt	9	8	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23557440	A	A	23557440	3	1	17	1	0	0	0	0	1	0	0	0	18329	637	22	2	3430	2	ZNF91	19	23557440	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	617929	23557440	35571543	776	35373											
ZNF536	9745	broad.mit.edu	37	chr19	30934718	30934718	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgggcagtcagatggcgctCctggccaaccagctgggccg	15	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30934718	A	A	30934718	2	1	17	1	0	0	0	0	0	0	0	1	18101	842	30	3		3	ZNF536	19	30934718	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	7377278	30934718	28194265	777	35374											
TSHZ3	57616	broad.mit.edu	37	chr19	31768669	31768669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggctcccatccttgcacCcatcccgcggggggctgggg	17	15	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768669	A	A	31768669	3	1	17	1	0	0	0	0	1	0	0	0	16750	623	22	2	1219	2	TSHZ3	19	31768669	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	833951	31768669	27360314	778	35375											
FFAR3	2865	broad.mit.edu	37	chr19	35850660	35850660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagccgactttcatgagCtgctgaggaggttgtgtggg	15	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35850660	A	A	35850660	3	1	17	1	0	0	0	0	1	0	0	0	5886	796	28	3	870	3	FFAR3	19	35850660	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4081991	35850660	23278323	779	35376											
ATP4A	495	broad.mit.edu	37	chr19	36046612	36046612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctacgggcacacggaggcGggcagcgatgtcctccactg	15	13	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36046612	T	T	36046612	3	4	17	1	0	0	0	0	1	0	0	0	1149	1116	39	1	1175	1	ATP4A	19	36046612	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	195952	36046612	23082371	780	35377											
KIRREL2	84063	broad.mit.edu	37	chr19	36352609	36352609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctcccacctggcccccCgaaactactgtgaccatttc	6	18	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36352609	A	A	36352609	1	1	17	0	1	0	0	0	0	0	0	0	8396	667	23	1		1	KIRREL2	19	36352609	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	305997	36352609	22776374	781	35378											
WDR62	284403	broad.mit.edu	37	chr19	36550989	36550989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggcttggcacgcctccCctcccctacacagcctggag	11	18	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36550989	A	A	36550989	1	1	17	0	1	0	0	0	0	0	0	0	17440	638	22	2		2	WDR62	19	36550989	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	198380	36550989	22577994	782	35379											
SIPA1L3	23094	broad.mit.edu	37	chr19	38621385	38621385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaggtggtcatcatccCgccttttgaggacggcactc	12	11	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38621385	A	A	38621385	3	1	17	1	0	0	0	0	1	0	0	0	14444	652	23	1	3146	1	SIPA1L3	19	38621385	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2070396	38621385	20507598	783	35380											
IL28B	282617	broad.mit.edu	37	chr19	39735139	39735139	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaagcgactcttcctagAcagcaaaggcacaggttagc	11	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39735139	T	T	39735139	1	4	17	0	1	0	0	0	0	0	0	0	7753	290	10	5		5	IL28B	19	39735139	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	1113754	39735139	19393844	784	35381											
SPTBN4	57731	broad.mit.edu	37	chr19	41038431	41038431	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctattccttccacccatacAccctagcagcccaggccctg	5	20	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41038431	G	G	41038431	1	3	17	0	1	0	0	0	0	0	0	0	15239	174	6	5		5	SPTBN4	19	41038431	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	1303292	41038431	18090552	785	35382											
CYP2A7	1549	broad.mit.edu	37	chr19	41383145	41383145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttttaaccctgcgggCcaaactcatggggatcacgt	10	12	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41383145	A	A	41383145	3	1	17	1	0	0	0	0	1	0	0	0	4196	739	26	3	385	3	CYP2A7	19	41383145	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	344714	41383145	17745838	786	35383											
ZNF574	64763	broad.mit.edu	37	chr19	42583284	42583284	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcctgtgggccaggccCgagtggctgtggagcactca	16	13	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42583284	A	A	42583284	2	1	17	1	0	0	0	0	0	0	0	1	18133	644	23	1		1	ZNF574	19	42583284	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1200139	42583284	16545699	787	35384											
PSG3	5671	broad.mit.edu	37	chr19	43236986	43236986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggcactcactgggttcCgtatttcacattcatagggt	11	10	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43236986	A	A	43236986	3	1	17	1	0	0	0	0	1	0	0	0	12762	652	23	1	643	1	PSG3	19	43236986	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	653702	43236986	15891997	788	35385											
PSG1	5669	broad.mit.edu	37	chr19	43382204	43382204	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggaatatgctgtttctcgTccactatatgcaggcccata	8	10	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43382204	A	A	43382204	2	1	17	1	0	0	0	0	0	0	0	1	12759	1654	58	5		5	PSG1	19	43382204	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	145218	43382204	15746779	789	35386											
FOSB	2354	broad.mit.edu	37	chr19	45971807	45971807	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccttggcttcccggcgacCtcagcgtggtcacaggggcc	14	15	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45971807	T	T	45971807	1	4	17	0	1	0	0	0	0	0	0	0	6044	696	24	4		4	FOSB	19	45971807	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	2589603	45971807	13157176	790	35387											
PRKD2	25865	broad.mit.edu	37	chr19	47181640	47181640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccgcccatggggtaggcGggccccaggcacctccagct	13	18	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47181640	T	T	47181640	1	4	17	0	1	0	0	0	0	0	0	0	12625	1131	39	1		1	PRKD2	19	47181640	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1209833	47181640	11947343	791	35388											
ZNF114	163071	broad.mit.edu	37	chr19	48789178	48789178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaaacagaggaaccacaCaggcagggggtgaataatgt	12	9	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48789178	A	A	48789178	3	1	17	1	0	0	0	0	1	0	0	0	17842	477	17	3	307	3	ZNF114	19	48789178	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1607538	48789178	10339805	792	35389											
CD37	951	broad.mit.edu	37	chr19	49842683	49842683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcgaggtgatctggcccCgcccccacccgcgatcggcc	11	19	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49842683	A	A	49842683	1	1	17	0	1	0	0	0	0	0	0	0	3038	667	23	1		1	CD37	19	49842683	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1053505	49842683	9286300	793	35390											
TEAD2	8463	broad.mit.edu	37	chr19	49846499	49846499	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcctcacctccaccttctCcaccacctgcttgccaaaag	4	20	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49846499	A	A	49846499	4	1	17	1	0	0	0	0	0	1	0	0	15861	864	30	3	289	3	TEAD2	19	49846499	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3816	49846499	9282484	794	35391											
KLK4	9622	broad.mit.edu	37	chr19	51410285	51410285	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggccacacggggcttttcCgaaagacacaaggccctgca	11	13	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51410285	A	A	51410285	4	1	17	1	0	0	0	0	0	1	0	0	8477	661	23	1	98	1	KLK4	19	51410285	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1563786	51410285	7718698	795	35392											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002985	52002985	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcagggctggtgatgaaaggGagacaggcaaaatgagggtg	18	4	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52002985	A	A	52002985	1	1	17	0	1	0	0	0	0	0	0	0	14421	1189	41	4		4	SIGLEC12	19	52002985	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	592700	52002985	7125998	796	35393											
SIGLEC6	946	broad.mit.edu	37	chr19	52031191	52031191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaagtaattaagaggtcCaggtgctcacatgagcccaa	10	9	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52031191	A	A	52031191	1	1	17	0	1	0	0	0	0	0	0	0	14425	609	21	2		2	SIGLEC6	19	52031191	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	28206	52031191	7097792	797	35394											
ZNF28	7576	broad.mit.edu	37	chr19	53321189	53321189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaatccaccgagaatacCatctcacctgaggaagagcc	9	13	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53321189	A	A	53321189	1	1	17	0	1	0	0	0	0	0	0	0	17939	609	21	2		2	ZNF28	19	53321189	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1289998	53321189	5807794	798	35395											
ZNF468	90333	broad.mit.edu	37	chr19	53352308	53352308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatgcaaaaatacacaaGggcacatccccaggagggaa	10	9	0	0	rs115049665	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53352308	T	T	53352308	1	4	17	0	1	0	0	0	0	0	0	0	18055	1015	35	2		2	ZNF468	19	53352308	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	31119	53352308	5776675	799	35396											
NLRP12	91662	broad.mit.edu	37	chr19	54314284	54314284	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcatgaccacggtgcgcGgtggctcggggcgctcctcg	16	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54314284	C	C	54314284	3	2	17	1	0	0	0	0	1	0	0	0	10569	1116	39	4	2684	4	NLRP12	19	54314284	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	961976	54314284	4814699	800	35397											
LILRB2	10288	broad.mit.edu	37	chr19	54782199	54782199	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtagcacctgtaggtcccCgcgtgggctgaggtcacagg	15	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54782199	A	A	54782199	2	1	17	1	0	0	0	0	0	0	0	1	8863	639	23	1		1	LILRB2	19	54782199	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	467915	54782199	4346784	801	35398											
TTYH1	57348	broad.mit.edu	37	chr19	54946637	54946637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtgcagtaccacagccGggaggacggtcagactgatg	15	10	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54946637	T	T	54946637	1	4	17	0	1	0	0	0	0	0	0	0	16865	1131	39	1		1	TTYH1	19	54946637	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	164438	54946637	4182346	802	35399											
LILRA1	11024	broad.mit.edu	37	chr19	55110827	55110827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggggagctgggtgtcctGggtggacattttaaaaaatt	14	5	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55110827	T	T	55110827	1	4	17	0	1	0	0	0	0	0	0	0	8856	1363	47	2		2	LILRA1	19	55110827	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	164190	55110827	4018156	803	35400											
NLRP2	55655	broad.mit.edu	37	chr19	55502017	55502017	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagggcttgaggtacccCgagtgtaaactgcagacctt	13	9	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55502017	A	A	55502017	2	1	17	1	0	0	0	0	0	0	0	1	10572	639	23	1		1	NLRP2	19	55502017	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	391190	55502017	3626966	804	35401											
C19orf51	352909	broad.mit.edu	37	chr19	55672123	55672123	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagctccgtcacgttgtgTtgagtgatctccccggccgt	12	13	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55672123	C	C	55672123	2	2	17	1	0	0	0	0	0	0	0	1	1952	1722	60	5		5	C19orf51	19	55672123	Silent	SNP	T	TCGA-05-4417-01A-22D-1855-08	170106	55672123	3456860	805	35402											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56702158	56702158	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcccccagccccgcacCccagaagagagggactaacc	11	18	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56702158	A	A	56702158	1	1	17	0	1	0	0	0	0	0	0	0	18368	638	22	2		2	ZSCAN5B	19	56702158	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1030035	56702158	2426825	806	35403											
ZNF835	90485	broad.mit.edu	37	chr19	57175225	57175225	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccttgccgcactcggggcAggtgtagggccgctcgcccg	17	15	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57175225	T	T	57175225	3	4	17	1	0	0	0	0	1	0	0	0	18315	188	7	5	273	5	ZNF835	19	57175225	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	473067	57175225	1953758	807	35404											
ZNF549	256051	broad.mit.edu	37	chr19	58042443	58042443	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcttcctacagattccCatggtaacagaagagtttgt	7	11	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58042443	A	A	58042443	2	1	17	1	0	0	0	0	0	0	0	1	18108	609	21	2		2	ZNF549	19	58042443	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	867218	58042443	1086540	808	35405											
ZNF135	7694	broad.mit.edu	37	chr19	58574842	58574842	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaccgaagccgaatgtcatCtccctgctggagcaagaggc	11	12	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58574842	A	A	58574842	2	1	17	1	0	0	0	0	0	0	0	1	17851	903	32	3		3	ZNF135	19	58574842	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	532399	58574842	554141	809	35406											
TGM6	343641	broad.mit.edu	37	chr20	2413145	2413145	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctccagcgtgcctacCctggagcctcaggagagggc	12	16	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2413145	G	G	2413145	2	3	17	1	0	0	0	0	0	0	0	1	15957	610	22	4		4	TGM6	20	2413145	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08		2413145	60612375	810	35407											
SMOX	54498	broad.mit.edu	37	chr20	4167988	4167988	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accacccacggtgctctgctGtccggccagcgtgaggctgc	13	16	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4167988	C	C	4167988	2	2	17	1	0	0	0	0	0	0	0	1	14917	1364	48	4		4	SMOX	20	4167988	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1754843	4167988	58857532	811	35408											
PLCB1	23236	broad.mit.edu	37	chr20	8722135	8722135	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcgaagctttatcaaaccCaatccgatatgtgaacctga	6	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8722135	G	G	8722135	3	3	17	1	0	0	0	0	1	0	0	0	12122	594	21	4	2528	4	PLCB1	20	8722135	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4554147	8722135	54303385	812	35409											
SNAP25	6616	broad.mit.edu	37	chr20	10286783	10286783	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccccttttctaggctgatTccaacaaaaccagaattgat	5	12	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10286783	A	A	10286783	3	1	17	1	0	0	0	0	1	0	0	0	14944	1783	62	5	707	5	SNAP25	20	10286783	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	1564648	10286783	52738737	813	35410											
SSTR4	6754	broad.mit.edu	37	chr20	23017003	23017003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgccaccgtcaaccacGtgtcccttatccttagctat	6	14	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23017003	T	T	23017003	3	4	17	1	0	0	0	0	1	0	0	0	15318	1145	40	3	885	3	SSTR4	20	23017003	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	12730220	23017003	40008517	814	35411											
E2F1	1869	broad.mit.edu	37	chr20	32266200	32266200	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtagggttaacagcgattGgcccctctggccaggagccc	15	12	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32266200	A	A	32266200	1	1	17	0	1	0	0	0	0	0	0	0	4906	1363	47	4		4	E2F1	20	32266200	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	9249197	32266200	30759320	815	35412											
AHCY	191	broad.mit.edu	37	chr20	32878341	32878341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcactccccgggacccCccatctggcacctaccggcc	7	23	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32878341	A	A	32878341	1	1	17	0	1	0	0	0	0	0	0	0	409	638	22	2		2	AHCY	20	32878341	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	612141	32878341	30147179	816	35413											
UQCC	55245	broad.mit.edu	37	chr20	33969745	33969745	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactgtatttcaaaggtccCgtgaatcccatggcttctat	7	10	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33969745	A	A	33969745	2	1	17	1	0	0	0	0	0	0	0	1	17141	639	23	1		1	UQCC	20	33969745	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1091404	33969745	29055775	817	35414											
DLGAP4	22839	broad.mit.edu	37	chr20	35125308	35125308	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcctggacagcagtaccCgaccgcccagcgtgacacgg	12	16	0	1	rs34044530		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35125308	A	A	35125308	2	1	17	1	0	0	0	0	0	0	0	1	4602	644	23	1		1	DLGAP4	20	35125308	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	1155563	35125308	27900212	818	35415											
TGIF2	60436	broad.mit.edu	37	chr20	35219804	35219804	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccattactgcacactccCatccctttagtctctgaaaa	3	16	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35219804	A	A	35219804	2	1	17	1	0	0	0	0	0	0	0	1	15949	581	21	2		2	TGIF2	20	35219804	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	94496	35219804	27805716	819	35416											
SAMHD1	25939	broad.mit.edu	37	chr20	35559071	35559071	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaattaaaatacaatttccaTattctcttggttgatctgat	5	6	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35559071	A	A	35559071	1	1	17	0	1	0	0	0	0	0	0	0	13939	1421	49	5		5	SAMHD1	20	35559071	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	339267	35559071	27466449	820	35417											
KIAA0406	9675	broad.mit.edu	37	chr20	36634758	36634758	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttctcctaaactttgctCttggaggtgcccaagattac	7	12	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36634758	A	A	36634758	4	1	17	1	0	0	0	0	0	1	0	0	8243	922	32	3	949	3	KIAA0406	20	36634758	Nonsense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1075687	36634758	26390762	821	35418											
CHD6	84181	broad.mit.edu	37	chr20	40079785	40079785	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggcaagtggatagccaaGgggggtgttacacacgggtt	17	6	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40079785	A	A	40079785	1	1	17	0	1	0	0	0	0	0	0	0	3360	1015	35	4		4	CHD6	20	40079785	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	3445027	40079785	22945735	822	35419											
PTPRT	11122	broad.mit.edu	37	chr20	40770554	40770554	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcccagaagggcacctaCaggatatgatgttcccatat	9	11	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40770554	A	A	40770554	5	1	17	1	0	0	0	0	0	0	1	0	12920	492	17	3	1610	3	PTPRT	20	40770554	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	690769	40770554	22254966	823	35420											
HNF4A	3172	broad.mit.edu	37	chr20	43029926	43029926	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaggcagagagggcactggGaggaggcagtgggagggcgg	24	5	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43029926	C	C	43029926	1	2	17	0	1	0	0	0	0	0	0	0	7320	1189	41	4		4	HNF4A	20	43029926	5'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	2259372	43029926	19995594	824	35421											
RIMS4	140730	broad.mit.edu	37	chr20	43386670	43386670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcttctggtgtgacacCcaactcccctagtccatttg	8	14	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43386670	A	A	43386670	1	1	17	0	1	0	0	0	0	0	0	0	13481	638	22	2		2	RIMS4	20	43386670	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	356744	43386670	19638850	825	35422											
WFDC8	90199	broad.mit.edu	37	chr20	44207837	44207837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctccatgtctggctaccCacccccatagacaccctcct	4	21	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44207837	A	A	44207837	1	1	17	0	1	0	0	0	0	0	0	0	17483	609	21	2		2	WFDC8	20	44207837	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	821167	44207837	18817683	826	35423											
PCIF1	63935	broad.mit.edu	37	chr20	44575086	44575086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccagagcacagggccCgcctctgctggctgtagtgt	13	14	1	1	rs145344384	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44575086	A	A	44575086	1	1	17	0	1	0	0	0	0	0	0	0	11674	667	23	1		1	PCIF1	20	44575086	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	367249	44575086	18450434	827	35424											
CDH22	64405	broad.mit.edu	37	chr20	44815504	44815504	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcatacagctgcctcgtaGggtgtggccagttctggggg	16	10	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44815504	A	A	44815504	2	1	17	1	0	0	0	0	0	0	0	1	3137	987	35	4		4	CDH22	20	44815504	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	240418	44815504	18210016	828	35425											
B4GALT5	9334	broad.mit.edu	37	chr20	48253874	48253874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacagagataaattccacCaaccttccaagaaactggac	7	11	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48253874	A	A	48253874	1	1	17	0	1	0	0	0	0	0	0	0	1279	609	21	2		2	B4GALT5	20	48253874	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3438370	48253874	14771646	829	35426											
TUBB1	81027	broad.mit.edu	37	chr20	57599371	57599371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcagatgttcgatgccCgcaataccatggctgcctgt	10	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57599371	A	A	57599371	3	1	17	1	0	0	0	0	1	0	0	0	16879	652	23	1	903	1	TUBB1	20	57599371	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	9345497	57599371	5426149	830	35427											
ZNF831	128611	broad.mit.edu	37	chr20	57768614	57768614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagagaccccaggtgggcCcacgcagcctgcctctttgt	12	16	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57768614	A	A	57768614	3	1	17	1	0	0	0	0	1	0	0	0	18314	623	22	2	2542	2	ZNF831	20	57768614	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	169243	57768614	5256906	831	35428											
PHACTR3	116154	broad.mit.edu	37	chr20	58349509	58349509	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagacgacttgcttttgtatCaggacgaggaggcgctgaac	13	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58349509	A	A	58349509	3	1	17	1	0	0	0	0	1	0	0	0	11906	827	29	3	1164	3	PHACTR3	20	58349509	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	580895	58349509	4676011	832	35429											
C20orf166	128826	broad.mit.edu	37	chr20	61150822	61150822	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatggatacggggtccCgggaggcagccttcaccagg	14	13	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61150822	A	A	61150822	1	1	17	0	1	0	0	0	0	0	0	0	2117	667	23	1		1	C20orf166	20	61150822	5'UTR	SNP	C	TCGA-05-4417-01A-22D-1855-08	2801313	61150822	1874698	833	35430											
SRMS	6725	broad.mit.edu	37	chr20	62173473	62173473	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaggagggaaggggcggtCgcaggcgcgtcagggccacg	21	11	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62173473	A	A	62173473	1	1	17	0	1	0	0	0	0	0	0	0	15270	899	31	3		3	SRMS	20	62173473	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	1022651	62173473	852047	834	35431											
GMEB2	26205	broad.mit.edu	37	chr20	62250612	62250612	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccaatggcaccgaggcccGagcttacccgtgaggggcca	13	16	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62250612	A	A	62250612	1	1	17	0	1	0	0	0	0	0	0	0	6552	1073	37	4		4	GMEB2	20	62250612	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	77139	62250612	774908	835	35432											
MYT1	4661	broad.mit.edu	37	chr20	62839282	62839282	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccctggaggatgcagccAgtgaggagtccagcaagcag	15	10	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62839282	G	G	62839282	3	3	17	1	0	0	0	0	1	0	0	0	10200	188	7	5	751	5	MYT1	20	62839282	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	588670	62839282	186238	836	35433											
TPTE	7179	broad.mit.edu	37	chr21	10920032	10920032	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccaaataacaggtggcAatctgaacccacacccctaa	6	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10920032	T	T	10920032	1	4	17	0	1	0	0	0	0	0	0	0	16554	145	5	5		5	TPTE	21	10920032	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08		10920032	37209863	837	35434											
LIPI	149998	broad.mit.edu	37	chr21	15561682	15561682	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctattctcggaataaataaAtctctgaaggaatcctttac	5	8	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15561682	G	G	15561682	2	3	17	1	0	0	0	0	0	0	0	1	8898	98	4	5		5	LIPI	21	15561682	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	4641650	15561682	32568213	838	35435											
RUNX1	861	broad.mit.edu	37	chr21	36164675	36164675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtacaggtggtaggagggCgagctggcttggaacgggcc	19	7	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36164675	A	A	36164675	2	1	17	1	0	0	0	0	0	0	0	1	13857	755	27	3		3	RUNX1	21	36164675	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	20602993	36164675	11965220	839	35436											
TMPRSS3	64699	broad.mit.edu	37	chr21	43796840	43796840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagaaggaagcccggccCaaaacacagaaggcgcatgc	13	11	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43796840	A	A	43796840	1	1	17	0	1	0	0	0	0	0	0	0	16371	609	21	2		2	TMPRSS3	21	43796840	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	7632165	43796840	4333055	840	35437											
COL6A1	1291	broad.mit.edu	37	chr21	47407630	47407630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagtgggggtggcaggacCaaagcctcctgggcacccaa	17	11	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47407630	A	A	47407630	1	1	17	0	1	0	0	0	0	0	0	0	3731	609	21	2		2	COL6A1	21	47407630	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	3610790	47407630	722265	841	35438											
PCNT	5116	broad.mit.edu	37	chr21	47783483	47783483	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaggaattccaaagaaAagaaacggactggaaagtta	10	5	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47783483	T	T	47783483	3	4	17	1	0	0	0	0	1	0	0	0	11684	14	1	5	2297	5	PCNT	21	47783483	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	375853	47783483	346412	842	35439											
POTEH	23784	broad.mit.edu	37	chr22	16279214	16279214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccatatctatccagtgCatttaaatttgcttttttct	3	10	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16279214	A	A	16279214	3	1	17	1	0	0	0	0	1	0	0	0	12363	710	25	3	656	3	POTEH	22	16279214	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08		16279214	35025352	843	35440											
POTEH	23784	broad.mit.edu	37	chr22	16287480	16287480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggcagcaccacttgcCcatcttgctcctgagtgtct	10	14	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287480	A	A	16287480	3	1	17	1	0	0	0	0	1	0	0	0	12363	623	22	2	1271	2	POTEH	22	16287480	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	8266	16287480	35017086	844	35441											
CECR1	51816	broad.mit.edu	37	chr22	17662792	17662792	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgaagacctcatagaaatCataggacaagcctttggcac	8	10	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17662792	A	A	17662792	3	1	17	1	0	0	0	0	1	0	0	0	3235	826	29	3	183	3	CECR1	22	17662792	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1375312	17662792	33641774	845	35442											
CABIN1	23523	broad.mit.edu	37	chr22	24487629	24487629	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtgacgaggaggagtgGctcatccactacatgctggg	16	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24487629	T	T	24487629	3	4	17	1	0	0	0	0	1	0	0	0	2554	1212	42	3	3708	3	CABIN1	22	24487629	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	6824837	24487629	26816937	846	35443											
ASPHD2	57168	broad.mit.edu	37	chr22	26839084	26839084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcagaggatggcccacGggtggttttcatggtggatt	15	7	2	1	rs138986249		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26839084	T	T	26839084	3	4	17	1	0	0	0	0	1	0	0	0	1059	1116	39	1	1032	1	ASPHD2	22	26839084	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2351455	26839084	24465482	847	35444											
SF3A1	10291	broad.mit.edu	37	chr22	30735151	30735151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctggatctcctcctcacCgatcttcttaccaatggctg	6	15	5	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30735151	A	A	30735151	3	1	17	1	0	0	0	0	1	0	0	0	14259	652	23	1	944	1	SF3A1	22	30735151	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	3896067	30735151	20569415	848	35445											
DEPDC5	9681	broad.mit.edu	37	chr22	32205512	32205512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttacaggctgtcttccctGggagcagcacatatatactg	10	10	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32205512	T	T	32205512	1	4	17	0	1	0	0	0	0	0	0	0	4482	1363	47	2		2	DEPDC5	22	32205512	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1470361	32205512	19099054	849	35446											
TMPRSS6	164656	broad.mit.edu	37	chr22	37466469	37466469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacagtgcacctcccaccGggccttccctgcccttgtct	8	19	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37466469	T	T	37466469	1	4	17	0	1	0	0	0	0	0	0	0	16374	1131	39	1		1	TMPRSS6	22	37466469	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	5260957	37466469	13838097	850	35447											
APOBEC3H	164668	broad.mit.edu	37	chr22	39496270	39496270	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggttttcccctttctgtTgcacagaaacacgatggctc	8	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39496270	A	A	39496270	1	1	17	0	1	0	0	0	0	0	0	0	797	1827	63	5		5	APOBEC3H	22	39496270	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	2029801	39496270	11808296	851	35448											
CACNA1I	8911	broad.mit.edu	37	chr22	40054166	40054166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccccacagccggaggagCtgaccaacatcctggagatc	11	14	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40054166	A	A	40054166	3	1	17	1	0	0	0	0	1	0	0	0	2572	796	28	3	2044	3	CACNA1I	22	40054166	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	557896	40054166	11250400	852	35449											
CACNA1I	8911	broad.mit.edu	37	chr22	40066959	40066959	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcactacaatcagcccacGgtgagccctggtctgcctcc	10	16	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40066959	C	C	40066959	2	2	17	1	0	0	0	0	0	0	0	1	2572	1130	39	4		4	CACNA1I	22	40066959	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	12793	40066959	11237607	853	35450											
LDOC1L	84247	broad.mit.edu	37	chr22	44892764	44892764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggcgctggactagtccCgttggaagctggatgcactg	16	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44892764	A	A	44892764	3	1	17	1	0	0	0	0	1	0	0	0	8782	652	23	1	50	1	LDOC1L	22	44892764	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	4825805	44892764	6411802	854	35451											
CD99	4267	broad.mit.edu	37	chrX	2638464	2638464	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaccaccctagttcctcCggtaagagtctctgaccctg	7	17	1	2	rs143391916	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2638464	A	A	2638464	2	1	17	1	0	0	0	0	0	0	0	1	3080	666	23	1		1	CD99	23	2638464	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08		2638464	152632096	855	35452											
MXRA5	25878	broad.mit.edu	37	chrX	3228256	3228256	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaacgtccctgcccagccCcgggaggggtgcaggggagc	17	13	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3228256	G	G	3228256	3	3	17	1	0	0	0	0	1	0	0	0	10097	623	22	4	502	4	MXRA5	23	3228256	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	589792	3228256	152042304	856	35453											
MXRA5	25878	broad.mit.edu	37	chrX	3242605	3242605	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatttccatagcttttcaTagttttctcgggtcattgga	7	8	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3242605	C	C	3242605	3	2	17	1	0	0	0	0	1	0	0	0	10097	1406	49	5	7377	5	MXRA5	23	3242605	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	14349	3242605	152027955	857	35454											
NLGN4X	57502	broad.mit.edu	37	chrX	5827013	5827013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacttctggtaaccaggaCatgcatctgagatatgaact	10	8	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827013	A	A	5827013	1	1	17	0	1	0	0	0	0	0	0	0	10559	493	17	3		3	NLGN4X	23	5827013	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2584408	5827013	149443547	858	35455											
NLGN4X	57502	broad.mit.edu	37	chrX	6069589	6069589	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaggcgagcctgcagagAgatagggctttccagggagc	16	10	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6069589	C	C	6069589	1	2	17	0	1	0	0	0	0	0	0	0	10559	319	11	5		5	NLGN4X	23	6069589	5'UTR	SNP	A	TCGA-05-4417-01A-22D-1855-08	242576	6069589	149200971	859	35456											
ARHGAP6	395	broad.mit.edu	37	chrX	11162106	11162106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctccagttacctttccCaagccttggtccaggagaac	9	14	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11162106	A	A	11162106	3	1	17	1	0	0	0	0	1	0	0	0	889	594	21	2	888	2	ARHGAP6	23	11162106	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	5092517	11162106	144108454	860	35457											
FRMPD4	9758	broad.mit.edu	37	chrX	12692874	12692874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactctatcctgggagtccaGggagcattcactaacgcatc	9	12	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12692874	T	T	12692874	1	4	17	0	1	0	0	0	0	0	0	0	6119	1015	35	2		2	FRMPD4	23	12692874	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	1530768	12692874	142577686	861	35458											
EGFL6	25975	broad.mit.edu	37	chrX	13641829	13641829	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taactcaaaacagggtatgtCatgatctgtactctgtgcga	9	8	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13641829	T	T	13641829	1	4	17	0	1	0	0	0	0	0	0	0	5003	841	29	4		4	EGFL6	23	13641829	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	948955	13641829	141628731	862	35459											
PIR	8544	broad.mit.edu	37	chrX	15509288	15509288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccaactagcatacctcGggtctgccaatgcttctccg	7	17	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15509288	T	T	15509288	2	4	17	1	0	0	0	0	0	0	0	1	12039	1103	39	1		1	PIR	23	15509288	Silent	SNP	G	TCGA-05-4417-01A-22D-1855-08	1867459	15509288	139761272	863	35460											
BEND2	139105	broad.mit.edu	37	chrX	18195712	18195712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgcagccattttgttcGggtcgagggattggctgtct	13	8	2	0	rs139599869		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18195712	T	T	18195712	3	4	17	1	0	0	0	0	1	0	0	0	1403	1116	39	1	838	1	BEND2	23	18195712	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2686424	18195712	137074848	864	35461											
GPR64	10149	broad.mit.edu	37	chrX	19028604	19028604	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaagcagaatatagagtaGcaacctgagaaaccatgatg	9	7	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19028604	C	C	19028604	1	2	17	0	1	0	0	0	0	0	0	0	6770	986	34	4		4	GPR64	23	19028604	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	832892	19028604	136241956	865	35462											
CFP	5199	broad.mit.edu	37	chrX	47486281	47486281	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacgtccgttgttccatggtCtggcccaggccacaggtcac	11	15	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47486281	A	A	47486281	3	1	17	1	0	0	0	0	1	0	0	0	3323	912	32	3	594	3	CFP	23	47486281	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	28457677	47486281	107784279	866	35463											
CCNB3	85417	broad.mit.edu	37	chrX	50094386	50094386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccgtaagtactaagcccCggatgaggttgggtttgtgt	13	9	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50094386	A	A	50094386	1	1	17	0	1	0	0	0	0	0	0	0	2944	667	23	1		1	CCNB3	23	50094386	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2608105	50094386	105176174	867	35464											
XAGE5	170627	broad.mit.edu	37	chrX	52840355	52840355	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgtgatcctgcacttcGggtccctgaggtctggattc	13	11	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52840355	T	T	52840355	1	4	17	0	1	0	0	0	0	0	0	0	17548	1131	39	1		1	XAGE5	23	52840355	5'Flank	SNP	G	TCGA-05-4417-01A-22D-1855-08	2745969	52840355	102430205	868	35465											
KDM5C	8242	broad.mit.edu	37	chrX	53245284	53245284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcagagtcttgtctttggcCatgaggcccaggcccatcat	11	13	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53245284	G	G	53245284	3	3	17	1	0	0	0	0	1	0	0	0	8205	594	21	4	4111	4	KDM5C	23	53245284	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	404929	53245284	102025276	869	35466											
ITIH5L	347365	broad.mit.edu	37	chrX	54817333	54817333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgcacataggagatgcCtgtcctttctgacactgtaa	9	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54817333	A	A	54817333	3	1	17	1	0	0	0	0	1	0	0	0	7978	681	24	2	3428	2	ITIH5L	23	54817333	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1572049	54817333	100453227	870	35467											
MTMR8	55613	broad.mit.edu	37	chrX	63490911	63490911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagcatactctgcttgggCtgcagccctttgtcaaagcg	10	12	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63490911	A	A	63490911	3	1	17	1	0	0	0	0	1	0	0	0	10043	796	28	3	598	3	MTMR8	23	63490911	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	8673578	63490911	91779649	871	35468											
TEX11	56159	broad.mit.edu	37	chrX	69843951	69843951	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actaaccttgattactctggGagggagaagtgagaaaagag	13	5	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69843951	T	T	69843951	1	4	17	0	1	0	0	0	0	0	0	0	15896	1189	41	3		3	TEX11	23	69843951	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	6353040	69843951	85426609	872	35469											
TEX11	56159	broad.mit.edu	37	chrX	70080747	70080747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttctgaggcaaatgagGcttcacacatactcagcaac	8	10	3	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70080747	T	T	70080747	3	4	17	1	0	0	0	0	1	0	0	0	15896	1203	42	3	2597	3	TEX11	23	70080747	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	236796	70080747	85189813	873	35470											
CDX4	1046	broad.mit.edu	37	chrX	72667475	72667475	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactagcggcagcagcctacCaggccaggctggcgggtcgc	15	14	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72667475	T	T	72667475	3	4	17	1	0	0	0	0	1	0	0	0	3214	594	21	4	388	4	CDX4	23	72667475	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2586728	72667475	82603085	874	35471											
ZDHHC15	158866	broad.mit.edu	37	chrX	74742811	74742811	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccaggacagtacccggcGgcagcaccgcagccccccag	11	20	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74742811	A	A	74742811	3	1	17	1	0	0	0	0	1	0	0	0	17731	1116	39	4	1088	4	ZDHHC15	23	74742811	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2075336	74742811	80527749	875	35472											
MAGT1	84061	broad.mit.edu	37	chrX	77112936	77112936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaactcatatgtatcacccCgtttgggtttcccttttgca	7	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77112936	A	A	77112936	3	1	17	1	0	0	0	0	1	0	0	0	9288	652	23	1	586	1	MAGT1	23	77112936	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2370125	77112936	78157624	876	35473											
PGK1	5230	broad.mit.edu	37	chrX	77381302	77381302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggtaaagtccttcctgGggtggatgctctcagcaata	11	9	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77381302	T	T	77381302	3	4	17	1	0	0	0	0	1	0	0	0	11885	1232	43	2	1271	2	PGK1	23	77381302	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	268366	77381302	77889258	877	35474											
PABPC5	140886	broad.mit.edu	37	chrX	90691248	90691248	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttctgtgaatatgggccAactgagagtgttaaagtaat	10	5	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90691248	T	T	90691248	2	4	17	1	0	0	0	0	0	0	0	1	11461	117	5	5		5	PABPC5	23	90691248	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	13309946	90691248	64579312	878	35475											
PCDH11X	27328	broad.mit.edu	37	chrX	91238181	91238181	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattttagcatcttttttccCccagtcttaggtaagaagga	8	8	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91238181	T	T	91238181	1	4	17	0	1	0	0	0	0	0	0	0	11602	638	22	4		4	PCDH11X	23	91238181	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	546933	91238181	64032379	879	35476											
PCDH19	57526	broad.mit.edu	37	chrX	99551618	99551618	+	Frame_Shift_Del	DEL	C	-	-													tcacatcgacagtcctcttgCctttcagggtaggcctctcc							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99551618	-	-	99551618	7	5	17	1	0	1	0	1	0	0	0	0	11608	739	26	0	346	0	PCDH19	23	99551618	Frame_Shift_Del	DEL	C	TCGA-05-4417-01A-22D-1855-08	8313437	99551618	55718942	880	35477											
NXF3	56000	broad.mit.edu	37	chrX	102339315	102339315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccatccggcatgttcccCtccattcttctctctggagg	8	16	3	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102339315	A	A	102339315	3	1	17	1	0	0	0	0	1	0	0	0	10880	680	24	2	1357	2	NXF3	23	102339315	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	2787697	102339315	52931245	881	35478											
NRK	203447	broad.mit.edu	37	chrX	105179071	105179071	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttctataactccatcagGtgcagatttttctttaaaaa	4	7	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105179071	C	C	105179071	1	2	17	0	1	0	0	0	0	0	0	0	10750	1276	44	4		4	NRK	23	105179071	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	2839756	105179071	50091489	882	35479											
TBC1D8B	54885	broad.mit.edu	37	chrX	106083498	106083498	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaggagttatgccctaagCtaaagcaaaagaattacaaa	7	7	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106083498	G	G	106083498	1	3	17	0	1	0	0	0	0	0	0	0	15748	812	28	4		4	TBC1D8B	23	106083498	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	904427	106083498	49187062	883	35480											
PRPS1	5631	broad.mit.edu	37	chrX	106882436	106882436	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttcaatccacacttggttGaatccatagatgtggaacct	7	9	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106882436	T	T	106882436	1	4	17	0	1	0	0	0	0	0	0	0	12684	1305	45	3		3	PRPS1	23	106882436	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	798938	106882436	48388124	884	35481											
COL4A6	1288	broad.mit.edu	37	chrX	107457416	107457416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgagttccattacagccatCcagaccaggtgggcctctgg	11	12	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107457416	A	A	107457416	3	1	17	1	0	0	0	0	1	0	0	0	3727	855	30	3	4865	3	COL4A6	23	107457416	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	574980	107457416	47813144	885	35482											
COL4A5	1287	broad.mit.edu	37	chrX	107827779	107827779	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agttttttttttttagtcttCgtttatcaaatttattaatg	4	3	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107827779	G	G	107827779	1	3	17	0	1	0	0	0	0	0	0	0	3726	899	31	4		4	COL4A5	23	107827779	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	370363	107827779	47442781	886	35483											
TMEM164	84187	broad.mit.edu	37	chrX	109414925	109414925	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacagccttggcctctccaAagagttttctgagtctttca	7	12	4	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109414925	G	G	109414925	1	3	17	0	1	0	0	0	0	0	0	0	16202	29	1	5		5	TMEM164	23	109414925	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	1587146	109414925	45855635	887	35484											
RGAG1	57529	broad.mit.edu	37	chrX	109695218	109695218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagcaaatgtcagccaCagcctctagagtaatgtccg	9	12	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109695218	A	A	109695218	3	1	17	1	0	0	0	0	1	0	0	0	13382	478	17	3	1375	3	RGAG1	23	109695218	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	280293	109695218	45575342	888	35485											
RGAG1	57529	broad.mit.edu	37	chrX	109696443	109696443	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgccactgatgagagccccAgactctagagtgacatccac	9	13	1	5			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109696443	T	T	109696443	2	4	17	1	0	0	0	0	0	0	0	1	13382	175	7	5		5	RGAG1	23	109696443	Silent	SNP	A	TCGA-05-4417-01A-22D-1855-08	1225	109696443	45574117	889	35486											
CAPN6	827	broad.mit.edu	37	chrX	110489966	110489966	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgccccaagaactgatcacAgaattttcggctgttccaga	8	12	1	4			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110489966	T	T	110489966	3	4	17	1	0	0	0	0	1	0	0	0	2656	188	7	5	164	5	CAPN6	23	110489966	Missense_Mutation	SNP	A	TCGA-05-4417-01A-22D-1855-08	793523	110489966	44780594	890	35487											
ZCCHC16	340595	broad.mit.edu	37	chrX	111624702	111624702	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccagggagctacaccgagAaaagttacttgtccaggctg	11	10	0	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111624702	G	G	111624702	1	3	17	0	1	0	0	0	0	0	0	0	17710	261	9	5		5	ZCCHC16	23	111624702	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	1134736	111624702	43645858	891	35488											
LHFPL1	340596	broad.mit.edu	37	chrX	111914743	111914743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcctggggctcaattatGtgccacttggtcattgcttc	10	11	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111914743	T	T	111914743	1	4	17	0	1	0	0	0	0	0	0	0	8836	1392	48	3		3	LHFPL1	23	111914743	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	290041	111914743	43355817	892	35489											
LONRF3	79836	broad.mit.edu	37	chrX	118123383	118123383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccaggacaatctggagCtcccacattgttctagtcag	8	12	4	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118123383	A	A	118123383	3	1	17	1	0	0	0	0	1	0	0	0	8983	797	28	3	1086	3	LONRF3	23	118123383	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	6208640	118123383	37147177	893	35490											
LONRF3	79836	broad.mit.edu	37	chrX	118140004	118140004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaatattctaaataatgCtttaaaaacttagctttgag	4	5	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118140004	G	G	118140004	1	3	17	0	1	0	0	0	0	0	0	0	8983	812	28	4		4	LONRF3	23	118140004	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	16621	118140004	37130556	894	35491											
LONRF3	79836	broad.mit.edu	37	chrX	118148065	118148065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaatgggtgagccttccCataggaaggcaggatggatg	16	7	0	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118148065	A	A	118148065	1	1	17	0	1	0	0	0	0	0	0	0	8983	609	21	2		2	LONRF3	23	118148065	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	8061	118148065	37122495	895	35492											
UBE2A	7319	broad.mit.edu	37	chrX	118716966	118716966	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactagcagattcacataacTctgggtttgtatgctaaaga	8	7	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118716966	C	C	118716966	1	2	17	0	1	0	0	0	0	0	0	0	16970	1566	54	5		5	UBE2A	23	118716966	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	568901	118716966	36553594	896	35493											
CUL4B	8450	broad.mit.edu	37	chrX	119669669	119669669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaaaactaaaagttttGggaacatccacttacctctt	6	8	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119669669	T	T	119669669	1	4	17	0	1	0	0	0	0	0	0	0	4091	1363	47	2		2	CUL4B	23	119669669	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	952703	119669669	35600891	897	35494											
CUL4B	8450	broad.mit.edu	37	chrX	119677559	119677559	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacgacagtttaagactatTaaattcagcatgtggtactt	7	6	1	1	rs35746806		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119677559	G	G	119677559	1	3	17	0	1	0	0	0	0	0	0	0	4091	1769	61	5		5	CUL4B	23	119677559	Intron	SNP	T	TCGA-05-4417-01A-22D-1855-08	7890	119677559	35593001	898	35495											
MCTS1	28985	broad.mit.edu	37	chrX	119744850	119744850	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgataaatagttttcttAgctgtgttctttcaggctat	7	5	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119744850	T	T	119744850	1	4	17	0	1	0	0	0	0	0	0	0	9495	435	15	5		5	MCTS1	23	119744850	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	67291	119744850	35525710	899	35496											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686593	125686593	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttgctgctgggccatgGtgggcggcgggcgagcggcg	21	10	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125686593	A	A	125686593	1	1	17	0	1	0	0	0	0	0	0	0	4297	1276	44	4		4	DCAF12L1	23	125686593	5'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	5941743	125686593	29583967	900	35497											
SMARCA1	6594	broad.mit.edu	37	chrX	128650515	128650515	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagtaaggactttccttttCattccttcaaagttatttaa	4	7	2	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128650515	G	G	128650515	1	3	17	0	1	0	0	0	0	0	0	0	14882	841	29	4		4	SMARCA1	23	128650515	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	2963922	128650515	26620045	901	35498											
ENOX2	10495	broad.mit.edu	37	chrX	129762018	129762018	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaatgtggagataatccCtacagagacaagagcatgga	12	6	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129762018	A	A	129762018	5	1	17	1	0	0	0	0	0	0	1	0	5169	695	24	2	225	2	ENOX2	23	129762018	Splice_Site	SNP	C	TCGA-05-4417-01A-22D-1855-08	1111503	129762018	25508542	902	35499											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217268	130217268	+	Intron	DEL	C	-	-													taaccccctgtgtagtgtggCcctggctattggagactggg							TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130217268	-	-	130217268	6	5	17	0	1	1	0	1	0	0	0	0	885	754	26	0		0	ARHGAP36	23	130217268	Intron	DEL	C	TCGA-05-4417-01A-22D-1855-08	455250	130217268	25053292	903	35500											
FRMD7	90167	broad.mit.edu	37	chrX	131264742	131264742	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatgccagcatctctgaggGatccccaccaaaggccagtc	10	14	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131264742	T	T	131264742	1	4	17	0	1	0	0	0	0	0	0	0	6115	1189	41	3		3	FRMD7	23	131264742	5'Flank	SNP	G	TCGA-05-4417-01A-22D-1855-08	1047474	131264742	24005818	904	35501											
GPC4	2239	broad.mit.edu	37	chrX	132436969	132436969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggcctgtgccccaggacGgacaccagcactgtcggctt	13	14	0	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132436969	T	T	132436969	3	4	17	1	0	0	0	0	1	0	0	0	6665	1116	39	1	77	1	GPC4	23	132436969	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1172227	132436969	22833591	905	35502											
FAM127C	441518	broad.mit.edu	37	chrX	134156366	134156366	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctcgtctgcacgatgaactCcgggagccggtcggtatcgc	14	13	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134156366	G	G	134156366	3	3	17	1	0	0	0	0	1	0	0	0	5479	864	30	4	221	4	FAM127C	23	134156366	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	1719397	134156366	21114194	906	35503											
ZNF75D	7626	broad.mit.edu	37	chrX	134427997	134427997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagttctctttcacagaccCactagtctcccacatagccc	6	16	3	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134427997	A	A	134427997	3	1	17	1	0	0	0	0	1	0	0	0	18263	594	21	2	1482	2	ZNF75D	23	134427997	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	271631	134427997	20842563	907	35504											
GPR101	83550	broad.mit.edu	37	chrX	136112793	136112793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgtcatcttcacccaaGtcaatgctgcactggttgac	7	13	4	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136112793	T	T	136112793	3	4	17	1	0	0	0	0	1	0	0	0	6687	1020	36	3	488	3	GPR101	23	136112793	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	1684796	136112793	19157767	908	35505											
F9	2158	broad.mit.edu	37	chrX	138612946	138612946	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgcgtgaacatgatcaTggcagaatcaccaggcctca	11	12	3	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138612946	C	C	138612946	3	2	17	1	0	0	0	0	1	0	0	0	5397	1464	51	5	25	5	F9	23	138612946	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	2500153	138612946	16657614	909	35506											
SLITRK2	84631	broad.mit.edu	37	chrX	144904084	144904084	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtactgaatatcaactgtgaGaacaaaggatttacaacagt	8	6	1	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144904084	T	T	144904084	3	4	17	1	0	0	0	0	1	0	0	0	14857	933	33	3	143	3	SLITRK2	23	144904084	Missense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	6291138	144904084	10366476	910	35507											
FMR1	2332	broad.mit.edu	37	chrX	147026478	147026478	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattagctccaacagaggaaGagagggagagcttcctgcgc	13	10	0	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147026478	T	T	147026478	4	4	17	1	0	0	0	0	0	1	0	0	6018	943	33	3	1619	3	FMR1	23	147026478	Nonsense_Mutation	SNP	G	TCGA-05-4417-01A-22D-1855-08	2122394	147026478	8244082	911	35508											
CXorf40A	91966	broad.mit.edu	37	chrX	148627153	148627153	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgcttccgcaggctacGggaggcccggggcgcttgcg	17	13	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148627153	T	T	148627153	1	4	17	0	1	0	0	0	0	0	0	0	4141	1131	39	1		1	CXorf40A	23	148627153	5'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	1600675	148627153	6643407	912	35509											
MAGEA8	4107	broad.mit.edu	37	chrX	149013595	149013595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcctacatccttgtcacCtgcctgggcctctcctatga	6	17	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149013595	A	A	149013595	2	1	17	1	0	0	0	0	0	0	0	1	9261	668	24	2		2	MAGEA8	23	149013595	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	386442	149013595	6256965	913	35510											
CD99L2	83692	broad.mit.edu	37	chrX	149938744	149938744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaccaactaggaaagcGtcagcaagggacagtgagta	14	8	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149938744	T	T	149938744	1	4	17	0	1	0	0	0	0	0	0	0	3081	1160	40	3		3	CD99L2	23	149938744	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	925149	149938744	5331816	914	35511											
VMA21	203547	broad.mit.edu	37	chrX	150573589	150573589	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatgataaatgctggagGgggccatctgatttgaataa	11	4	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150573589	T	T	150573589	1	4	17	0	1	0	0	0	0	0	0	0	17302	1247	43	2		2	VMA21	23	150573589	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	634845	150573589	4696971	915	35512											
GABRE	2564	broad.mit.edu	37	chrX	151128011	151128011	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggtcagagttgtaacctCgaaactgaagggtctgcatg	13	7	2	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151128011	A	A	151128011	1	1	17	0	1	0	0	0	0	0	0	0	6230	899	31	3		3	GABRE	23	151128011	Intron	SNP	C	TCGA-05-4417-01A-22D-1855-08	554422	151128011	4142549	916	35513											
HAUS7	55559	broad.mit.edu	37	chrX	152721766	152721766	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcactctcctgcagcTgcctggcaagctccgccagc	11	17	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152721766	A	A	152721766	3	1	17	1	0	0	0	0	1	0	0	0	7037	1580	55	5	430	5	HAUS7	23	152721766	Missense_Mutation	SNP	T	TCGA-05-4417-01A-22D-1855-08	1593755	152721766	2548794	917	35514											
ATP2B3	492	broad.mit.edu	37	chrX	152821552	152821552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgctggcatcacagtcCgcatggtgactggggacaac	14	11	1	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152821552	A	A	152821552	3	1	17	1	0	0	0	0	1	0	0	0	1145	652	23	1	2150	1	ATP2B3	23	152821552	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	99786	152821552	2449008	918	35515											
HCFC1	3054	broad.mit.edu	37	chrX	153230100	153230100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaccaggaggcgagtccCgtcacacacgaagccatagg	11	13	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153230100	A	A	153230100	3	1	17	1	0	0	0	0	1	0	0	0	7057	652	23	1	5936	1	HCFC1	23	153230100	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	408548	153230100	2040460	919	35516											
GDI1	2664	broad.mit.edu	37	chrX	153670435	153670435	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcgcctctggcctgagttGacggagctcttcctgtggcc	13	14	2	2			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153670435	T	T	153670435	1	4	17	0	1	0	0	0	0	0	0	0	6384	1305	45	3		3	GDI1	23	153670435	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	440335	153670435	1600125	920	35517											
CTAG2	30848	broad.mit.edu	37	chrX	153880487	153880487	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcaacagggaaagctgctgGagacaggagctgatggagag	16	6	1	3			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153880487	T	T	153880487	1	4	17	0	1	0	0	0	0	0	0	0	4025	1161	41	3		3	CTAG2	23	153880487	3'UTR	SNP	G	TCGA-05-4417-01A-22D-1855-08	210052	153880487	1390073	921	35518											
MPP1	4354	broad.mit.edu	37	chrX	154014610	154014610	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtagcaaacttcagtccCgcctccttgcaagggatcag	9	14	2	0	rs150129127	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154014610	A	A	154014610	2	1	17	1	0	0	0	0	0	0	0	1	9827	639	23	1		1	MPP1	23	154014610	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	134123	154014610	1255950	922	35519											
CLIC2	1193	broad.mit.edu	37	chrX	154508497	154508497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtgttagctggtccccatCcaagaatagtcttctggaaa	9	10	2	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154508497	A	A	154508497	3	1	17	1	0	0	0	0	1	0	0	0	3558	855	30	3	228	3	CLIC2	23	154508497	Missense_Mutation	SNP	C	TCGA-05-4417-01A-22D-1855-08	493887	154508497	762063	923	35520											
CLIC2	1193	broad.mit.edu	37	chrX	154519754	154519754	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttcacaaaggaagtctgaAgtcaactaatcctcattgtc	6	10	5	1			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154519754	T	T	154519754	1	4	17	0	1	0	0	0	0	0	0	0	3558	87	3	5		5	CLIC2	23	154519754	Intron	SNP	A	TCGA-05-4417-01A-22D-1855-08	11257	154519754	750806	924	35521											
CLIC2	1193	broad.mit.edu	37	chrX	154520024	154520024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttagttctgtatttgttGtgttggccaaaattataatt	7	4	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154520024	T	T	154520024	1	4	17	0	1	0	0	0	0	0	0	0	3558	1392	48	3		3	CLIC2	23	154520024	Intron	SNP	G	TCGA-05-4417-01A-22D-1855-08	270	154520024	750536	925	35522											
SPRY3	10251	broad.mit.edu	37	chrX	155003662	155003662	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggccctctccagcccttcCcttattgtgcaaacccacaa	5	18	1	0			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155003662	G	G	155003662	2	3	17	1	0	0	0	0	0	0	0	1	15225	610	22	4		4	SPRY3	23	155003662	Silent	SNP	C	TCGA-05-4417-01A-22D-1855-08	483638	155003662	266898	926	35523											
TTLL10	254173	broad.mit.edu	37	chr1	1118337	1118337	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggaaccaggaggaagttgCcgccctgcaggccaagaccc	13	15	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1118337	T	T	1118337	3	4	18	1	0	0	0	0	1	0	0	0	16849	739	26	4	1028	4	TTLL10	1	1118337	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08		1118337	248132284	1	35524											
MORN1	79906	broad.mit.edu	37	chr1	2268065	2268065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgctccaacccccctgGggcacacatggcctgggtgt	12	16	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2268065	T	T	2268065	1	4	18	0	1	0	0	0	0	0	0	0	9802	1247	43	2		2	MORN1	1	2268065	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1149728	2268065	246982556	2	35525											
MEGF6	1953	broad.mit.edu	37	chr1	3424283	3424283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaggagacaaggaggaCgtggaggggtggtgtctccc	20	6	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3424283	A	A	3424283	1	1	18	0	1	0	0	0	0	0	0	0	9555	551	19	3		3	MEGF6	1	3424283	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1156218	3424283	245826338	3	35526											
UBE4B	10277	broad.mit.edu	37	chr1	10155625	10155625	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcacgttcccagagcatGgatatcgatggtgtctcatg	10	11	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10155625	A	A	10155625	3	1	18	1	0	0	0	0	1	0	0	0	17009	1348	47	4	328	4	UBE4B	1	10155625	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	6731342	10155625	239094996	4	35527											
KIF1B	23095	broad.mit.edu	37	chr1	10407885	10407886	+	Splice_Site	DNP	GG	AT	AT													gggacatttttgcttcatcaGgtactaatgagggaccaaaa							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	10407886	AT	AT	10407885	5	1	18	1	0	0	0	0	0	0	1	0	8354	1014	35	4	5345	4	KIF1B	1	10407885	Splice_Site	DNP	GG	TCGA-05-4418-01A-01D-1265-08	252260	10407885	238842736	5	35528											
C1orf127	148345	broad.mit.edu	37	chr1	11008316	11008316	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaccaggccctgtctggcGtggcctctccacctccgttc	11	17	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11008316	A	A	11008316	3	1	18	1	0	0	0	0	1	0	0	0	2014	1145	40	4	599	4	C1orf127	1	11008316	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	600431	11008316	238242305	6	35529											
AADACL3	126767	broad.mit.edu	37	chr1	12776245	12776245	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactaggggtcactctgtgGgtcatttgcagccatttttt	10	9	4	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12776245	A	A	12776245	1	1	18	0	1	0	0	0	0	0	0	0	12	1247	43	4		4	AADACL3	1	12776245	5'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	1767929	12776245	236474376	7	35530											
UBR4	23352	broad.mit.edu	37	chr1	19433433	19433433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcattgcagtatggcttcaCcgtggtgagggcctcaacgg	13	11	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19433433	A	A	19433433	3	1	18	1	0	0	0	0	1	0	0	0	17030	507	18	3	3518	3	UBR4	1	19433433	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	6657188	19433433	229817188	8	35531											
UBR4	23352	broad.mit.edu	37	chr1	19443790	19443790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtccgcaccatcttggtcCgtttcagatccccgattttc	8	14	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19443790	A	A	19443790	3	1	18	1	0	0	0	0	1	0	0	0	17030	652	23	1	4939	1	UBR4	1	19443790	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	10357	19443790	229806831	9	35532											
TCEA3	6920	broad.mit.edu	37	chr1	23723999	23723999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggatgggtgctgctagacGgtgcagacacccacagcccc	13	13	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23723999	A	A	23723999	1	1	18	0	1	0	0	0	0	0	0	0	15791	1131	39	4		4	TCEA3	1	23723999	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	4280209	23723999	225526622	10	35533											
LDLRAP1	26119	broad.mit.edu	37	chr1	25880433	25880433	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgcctgagaactggacaGacacgcgggagacgctgctg	15	11	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25880433	T	T	25880433	3	4	18	1	0	0	0	0	1	0	0	0	8780	942	33	3	115	3	LDLRAP1	1	25880433	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	2156434	25880433	223370188	11	35534											
SEPN1	57190	broad.mit.edu	37	chr1	26131624	26131624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcctctccgatgtctgtGtctcatagggtcaactcccg	10	13	4	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26131624	T	T	26131624	1	4	18	0	1	0	0	0	0	0	0	0	14169	1392	48	3		3	SEPN1	1	26131624	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	251191	26131624	223118997	12	35535											
FOXJ3	22887	broad.mit.edu	37	chr1	42647570	42647570	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacactcacTctctctctctctcttacctg	1	19	5	0	rs112546829		TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42647570	A	A	42647570	1	1	18	0	1	0	0	0	0	0	0	0	6073	1566	54	5		5	FOXJ3	1	42647570	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	16515946	42647570	206603051	13	35536											
PPCS	79717	broad.mit.edu	37	chr1	42922700	42922700	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcaccactttggcggactAtttgcatctgttgcaggctg	11	10	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42922700	G	G	42922700	3	3	18	1	0	0	0	0	1	0	0	0	12401	449	16	5	466	5	PPCS	1	42922700	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	275130	42922700	206327921	14	35537											
SLC6A9	6536	broad.mit.edu	37	chr1	44474186	44474186	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggttattgcagtaggcccaGggcagcacgtgcgtcatgga	16	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44474186	C	C	44474186	2	2	18	1	0	0	0	0	0	0	0	1	14805	987	35	4		4	SLC6A9	1	44474186	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	1551486	44474186	204776435	15	35538											
MKNK1	8569	broad.mit.edu	37	chr1	47030775	47030775	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcagtttcatcccactgcCcaagtcaaagtcacagattt	6	12	4	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47030775	T	T	47030775	3	4	18	1	0	0	0	0	1	0	0	0	9697	623	22	4	711	4	MKNK1	1	47030775	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2556589	47030775	202219846	16	35539											
NRD1	4898	broad.mit.edu	37	chr1	52343944	52343944	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccattgcaagcctcctccctCaccggtattgcttggggtcg	10	15	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52343944	A	A	52343944	1	1	18	0	1	0	0	0	0	0	0	0	10740	841	29	3		3	NRD1	1	52343944	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	5313169	52343944	196906677	17	35540											
CDCP2	200008	broad.mit.edu	37	chr1	54606724	54606724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaatggggagacaggagCccagtaggcacaggaggatt	17	6	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54606724	A	A	54606724	1	1	18	0	1	0	0	0	0	0	0	0	3124	754	26	3		3	CDCP2	1	54606724	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2262780	54606724	194643897	18	35541											
SSBP3	23648	broad.mit.edu	37	chr1	54723849	54723849	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccagacagtagaggcaggTtatagatcacagcacatgga	13	8	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54723849	A	A	54723849	1	1	18	0	1	0	0	0	0	0	0	0	15299	1740	60	5		5	SSBP3	1	54723849	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	117125	54723849	194526772	19	35542											
KANK4	163782	broad.mit.edu	37	chr1	62740193	62740193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacagacactgccttcacCctgaaggggagggagggcag	14	11	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62740193	A	A	62740193	3	1	18	1	0	0	0	0	1	0	0	0	8049	623	22	2	2436	2	KANK4	1	62740193	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	8016344	62740193	186510428	20	35543											
LRRC40	55631	broad.mit.edu	37	chr1	70641659	70641659	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatctggttttcacctacgtGcaattcctacaaaatcaaag	5	10	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70641659	A	A	70641659	3	1	18	1	0	0	0	0	1	0	0	0	9085	1319	46	4	1033	4	LRRC40	1	70641659	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	7901466	70641659	178608962	21	35544											
C1orf173	127254	broad.mit.edu	37	chr1	75037769	75037769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccctctccatcttggcGgtgcccttccttcagggccc	10	19	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75037769	T	T	75037769	3	4	18	1	0	0	0	0	1	0	0	0	2034	1116	39	1	971	1	C1orf173	1	75037769	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	4396110	75037769	174212852	22	35545											
LHX8	431707	broad.mit.edu	37	chr1	75608973	75608973	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagagaaagtcctctgcaGagtacattatgactgcatgc	11	8	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75608973	A	A	75608973	3	1	18	1	0	0	0	0	1	0	0	0	8848	942	33	4	578	4	LHX8	1	75608973	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	571204	75608973	173641648	23	35546											
IFI44L	10964	broad.mit.edu	37	chr1	79107250	79107250	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcactgaggcagatgctgcGggctgcagatgattttttag	14	7	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79107250	C	C	79107250	3	2	18	1	0	0	0	0	1	0	0	0	7588	1116	39	4	1306	4	IFI44L	1	79107250	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3498277	79107250	170143371	24	35547											
LPHN2	23266	broad.mit.edu	37	chr1	82408764	82408764	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaggctgcagataaaaTttatttcatgccctggactc	7	10	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82408764	C	C	82408764	3	2	18	1	0	0	0	0	1	0	0	0	9003	1493	52	5	523	5	LPHN2	1	82408764	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	3301514	82408764	166841857	25	35548											
SAMD13	148418	broad.mit.edu	37	chr1	84791262	84791262	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagacccatttgtgagcCtggccacacccttgtgcagg	11	13	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84791262	T	T	84791262	1	4	18	0	1	0	0	0	0	0	0	0	13929	696	24	4		4	SAMD13	1	84791262	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2382498	84791262	164459359	26	35549											
SYDE2	84144	broad.mit.edu	37	chr1	85648290	85648290	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtacactcatgagcccagAtatgtactgtgaacacttag	8	9	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85648290	G	G	85648290	3	3	18	1	0	0	0	0	1	0	0	0	15555	333	12	5	1569	5	SYDE2	1	85648290	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	857028	85648290	163602331	27	35550											
CLCA2	9635	broad.mit.edu	37	chr1	86900337	86900337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctttcccatgaatgggaCtgagcttccacctcctccca	7	16	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86900337	A	A	86900337	3	1	18	1	0	0	0	0	1	0	0	0	3489	565	20	3	903	3	CLCA2	1	86900337	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1252047	86900337	162350284	28	35551											
SH3GLB1	51100	broad.mit.edu	37	chr1	87195890	87195890	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaacccatgggtccagtcaCagtctgtgttagtatacctt	8	11	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87195890	G	G	87195890	1	3	18	0	1	0	0	0	0	0	0	0	14366	493	17	4		4	SH3GLB1	1	87195890	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	295553	87195890	162054731	29	35552											
LRRC8C	84230	broad.mit.edu	37	chr1	90179493	90179493	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaaaacttgaaatcattaAgaacgtaatgataccagcca	5	8	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90179493	T	T	90179493	3	4	18	1	0	0	0	0	1	0	0	0	9110	72	3	5	1370	5	LRRC8C	1	90179493	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	2983603	90179493	159071128	30	35553											
SASS6	163786	broad.mit.edu	37	chr1	100553652	100553652	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaattctgtaagatggccTtcaaaattgcaaacattaaa	5	6	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100553652	C	C	100553652	1	2	18	0	1	0	0	0	0	0	0	0	13962	1624	56	5		5	SASS6	1	100553652	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	10374159	100553652	148696969	31	35554											
PRPF38B	55119	broad.mit.edu	37	chr1	109241810	109241810	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggagatctctgagtccacGgaggtccccaagaaggtcaa	12	10	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109241810	C	C	109241810	3	2	18	1	0	0	0	0	1	0	0	0	12674	1116	39	4	831	4	PRPF38B	1	109241810	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	8688158	109241810	140008811	32	35555											
CASQ2	845	broad.mit.edu	37	chr1	116310859	116310859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgttcccatatcccaaCccctggccaaaggcattccc	5	19	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116310859	A	A	116310859	1	1	18	0	1	0	0	0	0	0	0	0	2707	522	18	3		3	CASQ2	1	116310859	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	7069049	116310859	132939762	33	35556											
PDE4DIP	9659	broad.mit.edu	37	chr1	144931038	144931038	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccatctgggggtacctttGtgcttgctaagtcgggtggc	14	10	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144931038	C	C	144931038	1	2	18	0	1	0	0	0	0	0	0	0	11737	1377	48	4		4	PDE4DIP	1	144931038	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	28620179	144931038	104319583	34	35557											
CA14	23632	broad.mit.edu	37	chr1	150235024	150235024	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcatcctaattgaggtcaGtagcccccagtcccttccag	10	14	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150235024	A	A	150235024	1	1	18	0	1	0	0	0	0	0	0	0	2541	1044	36	4		4	CA14	1	150235024	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	5303986	150235024	99015597	35	35558											
SEMA6C	10500	broad.mit.edu	37	chr1	151110269	151110269	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccaaggcctggacaaagTgtggctctaagatggggaat	14	8	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151110269	A	A	151110269	3	1	18	1	0	0	0	0	1	0	0	0	14154	1696	59	5	2258	5	SEMA6C	1	151110269	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	875245	151110269	98140352	36	35559											
MRPL9	65005	broad.mit.edu	37	chr1	151734125	151734125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatgcctgtaatcccagCactttgggaggccaaggtgg	13	11	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151734125	A	A	151734125	1	1	18	0	1	0	0	0	0	0	0	0	9914	725	25	3		3	MRPL9	1	151734125	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	623856	151734125	97516496	37	35560											
HRNR	388697	broad.mit.edu	37	chr1	152191540	152191540	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagctagagtcatgttgGccggagcttgatgactgccc	13	11	1	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152191540	T	T	152191540	2	4	18	1	0	0	0	0	0	0	0	1	7426	1190	42	3		3	HRNR	1	152191540	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	457415	152191540	97059081	38	35561											
LCE2B	26239	broad.mit.edu	37	chr1	152659153	152659153	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatgtgcttttatttagaGgaaagattcaagttgtttct	9	3	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152659153	A	A	152659153	1	1	18	0	1	0	0	0	0	0	0	0	8738	1015	35	4		4	LCE2B	1	152659153	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	467613	152659153	96591468	39	35562											
IVL	3713	broad.mit.edu	37	chr1	152882670	152882670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaagctcttagaccagCaactggatcaagagctagtc	10	9	2	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152882670	A	A	152882670	3	1	18	1	0	0	0	0	1	0	0	0	7999	711	25	3	399	3	IVL	1	152882670	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	223517	152882670	96367951	40	35563											
GBA	2629	broad.mit.edu	37	chr1	155207330	155207330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattttcagctgtcactgcCcagaactgtaacttgtgctc	7	12	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155207330	A	A	155207330	3	1	18	1	0	0	0	0	1	0	0	0	6328	624	22	2	829	2	GBA	1	155207330	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2324660	155207330	94043291	41	35564											
DAP3	7818	broad.mit.edu	37	chr1	155708099	155708099	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggacccagtaagatgagGaagtcgggcagtacacagga	15	8	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155708099	A	A	155708099	1	1	18	0	1	0	0	0	0	0	0	0	4267	1189	41	4		4	DAP3	1	155708099	3'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	500769	155708099	93542522	42	35565											
ARHGEF11	9826	broad.mit.edu	37	chr1	156914841	156914841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgccagggggttgctggcCctctccagggcggtggcatc	17	13	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156914841	A	A	156914841	3	1	18	1	0	0	0	0	1	0	0	0	898	622	22	2	1775	2	ARHGEF11	1	156914841	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1206742	156914841	92335780	43	35566											
CD1C	911	broad.mit.edu	37	chr1	158262871	158262871	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttccttgagtaagttttgGaatagagtgactgaaatagg	11	5	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262871	A	A	158262871	1	1	18	0	1	0	0	0	0	0	0	0	3006	1189	41	4		4	CD1C	1	158262871	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1348030	158262871	90987750	44	35567											
IGSF8	93185	broad.mit.edu	37	chr1	160063683	160063683	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcccagacgaagctcccCtgcagccaatcgctcagcat	8	17	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160063683	T	T	160063683	3	4	18	1	0	0	0	0	1	0	0	0	7674	681	24	4	1136	4	IGSF8	1	160063683	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1800812	160063683	89186938	45	35568											
FCGR3A	2214	broad.mit.edu	37	chr1	161514851	161514851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagacataagggaaagcCagattgggagtcaaccctgc	12	10	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161514851	A	A	161514851	1	1	18	0	1	0	0	0	0	0	0	0	5841	609	21	2		2	FCGR3A	1	161514851	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1451168	161514851	87735770	46	35569											
OLFML2B	25903	broad.mit.edu	37	chr1	161970075	161970075	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcgcgtctgcagaagttcGatggagttgatctgctggga	16	7	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161970075	T	T	161970075	2	4	18	1	0	0	0	0	0	0	0	1	10953	1048	37	3		3	OLFML2B	1	161970075	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	455224	161970075	87280546	47	35570											
RABGAP1L	9910	broad.mit.edu	37	chr1	174190032	174190032	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgttttaatttcttctAgaaatgaaatactttcataa	4	4	3	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174190032	G	G	174190032	1	3	18	0	1	0	0	0	0	0	0	0	13073	435	15	5		5	RABGAP1L	1	174190032	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	12219957	174190032	75060589	48	35571											
ASTN1	460	broad.mit.edu	37	chr1	176853723	176853723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactgtaagcttttctttcCcaaccaactacaaaaatgat	3	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176853723	A	A	176853723	1	1	18	0	1	0	0	0	0	0	0	0	1068	638	22	2		2	ASTN1	1	176853723	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2663691	176853723	72396898	49	35572											
CACNA1E	777	broad.mit.edu	37	chr1	181620455	181620455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctttaagtattaaggaaCcatttttctttctttcagac	6	7	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181620455	A	A	181620455	1	1	18	0	1	0	0	0	0	0	0	0	2568	522	18	3		3	CACNA1E	1	181620455	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	4766732	181620455	67630166	50	35573											
PRG4	10216	broad.mit.edu	37	chr1	186278009	186278009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacgacaccaactccccGcaagatgacatcaacaatgc	6	14	1	3	rs149799261	by1000genomes	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186278009	T	T	186278009	3	4	18	1	0	0	0	0	1	0	0	0	12587	1087	38	3	3180	3	PRG4	1	186278009	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	4657554	186278009	62972612	51	35574											
UCHL5	51377	broad.mit.edu	37	chr1	192985378	192985378	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctggcactattgccaaaCgtgcactgagccaattagga	11	10	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192985378	A	A	192985378	1	1	18	0	1	0	0	0	0	0	0	0	17048	551	19	3		3	UCHL5	1	192985378	3'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08	6707369	192985378	56265243	52	35575											
F13B	2165	broad.mit.edu	37	chr1	197029605	197029605	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgaacgacatctccttcTtcataggtttgctttacagg	7	10	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197029605	A	A	197029605	3	1	18	1	0	0	0	0	1	0	0	0	5384	1606	56	5	1321	5	F13B	1	197029605	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	4044227	197029605	52221016	53	35576											
CRB1	23418	broad.mit.edu	37	chr1	197390532	197390532	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaatggctcttctactttTccgaagcaacagggatgtgt	10	10	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197390532	C	C	197390532	3	2	18	1	0	0	0	0	1	0	0	0	3880	1783	62	5	1596	5	CRB1	1	197390532	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	360927	197390532	51860089	54	35577											
NEK7	140609	broad.mit.edu	37	chr1	198222102	198222102	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacctacatatatgaaaatGatcagtgattgtgtgtattg	8	5	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198222102	A	A	198222102	1	1	18	0	1	0	0	0	0	0	0	0	10424	1305	45	4		4	NEK7	1	198222102	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	831570	198222102	51028519	55	35578											
PTPRC	5788	broad.mit.edu	37	chr1	198703380	198703380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaatttctttgataatcCaatattctttttgaaaaatt	4	4	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198703380	A	A	198703380	1	1	18	0	1	0	0	0	0	0	0	0	12905	609	21	2		2	PTPRC	1	198703380	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	481278	198703380	50547241	56	35579											
CACNA1S	779	broad.mit.edu	37	chr1	201022461	201022461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccactgtgtgtctgcagcCctgccctctgttagctcccc	8	18	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201022461	A	A	201022461	1	1	18	0	1	0	0	0	0	0	0	0	2573	638	22	2		2	CACNA1S	1	201022461	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2319081	201022461	48228160	57	35580											
CACNA1S	779	broad.mit.edu	37	chr1	201035572	201035572	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctgaaaacactcccaccttCcccttccctttcctccagcc	2	22	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201035572	G	G	201035572	1	3	18	0	1	0	0	0	0	0	0	0	2573	870	30	4		4	CACNA1S	1	201035572	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	13111	201035572	48215049	58	35581											
CACNA1S	779	broad.mit.edu	37	chr1	201044702	201044702	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcccgccgtaggccatgatCccattgtacatcattgaggt	11	12	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201044702	A	A	201044702	2	1	18	1	0	0	0	0	0	0	0	1	2573	842	30	3		3	CACNA1S	1	201044702	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	9130	201044702	48205919	59	35582											
LAD1	3898	broad.mit.edu	37	chr1	201351970	201351970	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccctcactcccctatgCatccagcacatgccacatat	3	19	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201351970	T	T	201351970	1	4	18	0	1	0	0	0	0	0	0	0	8671	725	25	4		4	LAD1	1	201351970	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	307268	201351970	47898651	60	35583											
LRRN2	10446	broad.mit.edu	37	chr1	204587527	204587527	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgggtctcctgcacccGgagctccagcccctgtcctt	13	16	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204587527	T	T	204587527	2	4	18	1	0	0	0	0	0	0	0	1	9122	1115	39	1		1	LRRN2	1	204587527	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	3235557	204587527	44663094	61	35584											
NFASC	23114	broad.mit.edu	37	chr1	204982042	204982042	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggctgtcctccctgtcCctgaggcaccaccctcccct	9	20	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204982042	T	T	204982042	1	4	18	0	1	0	0	0	0	0	0	0	10454	638	22	4		4	NFASC	1	204982042	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	394515	204982042	44268579	62	35585											
LAMB3	3914	broad.mit.edu	37	chr1	209801421	209801421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaggtgagtccagtgaagCccggcttgcataggtcacag	14	10	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209801421	A	A	209801421	3	1	18	1	0	0	0	0	1	0	0	0	8684	739	26	3	2323	3	LAMB3	1	209801421	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	4819379	209801421	39449200	63	35586											
CENPF	1063	broad.mit.edu	37	chr1	214818476	214818476	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttttcttgtgatcaccagGagttactccagagagtagaa	9	7	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214818476	T	T	214818476	4	4	18	1	0	0	0	0	0	1	0	0	3261	1175	41	3	5609	3	CENPF	1	214818476	Nonsense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	5017055	214818476	34432145	64	35587											
SLC30A10	55532	broad.mit.edu	37	chr1	220091866	220091866	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaagactactgcagcacaGatgcaaatctggaagccacg	10	10	1	3	rs34618762		TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220091866	C	C	220091866	1	2	18	0	1	0	0	0	0	0	0	0	14668	957	33	4		4	SLC30A10	1	220091866	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	5273390	220091866	29158755	65	35588											
PSEN2	5664	broad.mit.edu	37	chr1	227073496	227073496	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattagaggaaaatagaccCagattttttgtactcctccc	6	9	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227073496	G	G	227073496	1	3	18	0	1	0	0	0	0	0	0	0	12757	609	21	4		4	PSEN2	1	227073496	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	6981630	227073496	22177125	66	35589											
NUP133	55746	broad.mit.edu	37	chr1	229588306	229588306	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagtcaatactggcatcGcactgagatttagctgtttc	10	9	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229588306	A	A	229588306	3	1	18	1	0	0	0	0	1	0	0	0	10849	1087	38	4	425	4	NUP133	1	229588306	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	2514810	229588306	19662315	67	35590											
RYR2	6262	broad.mit.edu	37	chr1	237656365	237656365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacttgttattgcagacaCgtcttgtgaaccatgtcagc	10	9	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237656365	A	A	237656365	3	1	18	1	0	0	0	0	1	0	0	0	13880	536	19	3	2013	3	RYR2	1	237656365	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	8068059	237656365	11594256	68	35591											
RYR2	6262	broad.mit.edu	37	chr1	237730113	237730113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccagtcatctgtacgtGctggaggctcatctcctctg	11	12	5	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237730113	T	T	237730113	1	4	18	0	1	0	0	0	0	0	0	0	13880	1334	46	3		3	RYR2	1	237730113	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	73748	237730113	11520508	69	35592											
ZP4	57829	broad.mit.edu	37	chr1	238048738	238048738	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcagggggtcagtgctGggtgttgcccaacactgttg	15	9	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048738	T	T	238048738	2	4	18	1	0	0	0	0	0	0	0	1	18347	1335	47	2		2	ZP4	1	238048738	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	318625	238048738	11201883	70	35593											
FMN2	56776	broad.mit.edu	37	chr1	240351389	240351389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataattggaagagagactGgatattttttggtacttatg	10	2	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240351389	T	T	240351389	1	4	18	0	1	0	0	0	0	0	0	0	6008	1363	47	2		2	FMN2	1	240351389	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	2302651	240351389	8899232	71	35594											
OR2C3	81472	broad.mit.edu	37	chr1	247694786	247694786	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacgacatcccaagtgccCtgtcttccaaggtcactttg	7	13	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247694786	A	A	247694786	1	1	18	0	1	0	0	0	0	0	0	0	11087	696	24	2		2	OR2C3	1	247694786	3'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08	7343397	247694786	1555835	72	35595											
OR2G3	81469	broad.mit.edu	37	chr1	247768887	247768887	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgcggatccccctggaggGatgggattgggcaatgagag	19	7	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247768887	A	A	247768887	1	1	18	0	1	0	0	0	0	0	0	0	11093	1189	41	4		4	OR2G3	1	247768887	5'Flank	SNP	G	TCGA-05-4418-01A-01D-1265-08	74101	247768887	1481734	73	35596											
OR2L13	284521	broad.mit.edu	37	chr1	248185239	248185239	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccttcaggaaggatcgtAtgaatgccccatggaaaatt	9	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248185239	T	T	248185239	1	4	18	0	1	0	0	0	0	0	0	0	11100	464	16	5		5	OR2L13	1	248185239	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	416352	248185239	1065382	74	35597											
OR2L13	284521	broad.mit.edu	37	chr1	248223817	248223817	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttaaaaattaaactttatCagaagtatgtgtggacagaa	7	3	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248223817	A	A	248223817	1	1	18	0	1	0	0	0	0	0	0	0	11100	841	29	3		3	OR2L13	1	248223817	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	38578	248223817	1026804	75	35598											
OR2L13	284521	broad.mit.edu	37	chr1	248263535	248263535	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacccccatgctcaatccCattatctacagcctgaggaa	5	15	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248263535	A	A	248263535	2	1	18	1	0	0	0	0	0	0	0	1	11100	581	21	2		2	OR2L13	1	248263535	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	39718	248263535	987086	76	35599											
OR2M5	127059	broad.mit.edu	37	chr1	248308920	248308920	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgggctctatggatgcaatCattgatgctgtagcgacatt	11	8	2	1	rs146433942		TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248308920	T	T	248308920	2	4	18	1	0	0	0	0	0	0	0	1	11107	816	29	4		4	OR2M5	1	248308920	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	45385	248308920	941701	77	35600											
OR2T12	127064	broad.mit.edu	37	chr1	248457981	248457981	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacgtccccagccaccgTttcagggcttccttgacctc	7	18	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248457981	A	A	248457981	3	1	18	1	0	0	0	0	1	0	0	0	11113	1722	60	5	65	5	OR2T12	1	248457981	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	149061	248457981	792640	78	35601											
SNTG2	54221	broad.mit.edu	37	chr2	1271214	1271214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgactttgaggaccagagGccctattgcttcagcatcgt	10	10	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1271214	T	T	1271214	3	4	18	1	0	0	0	0	1	0	0	0	14989	1194	42	3	1209	3	SNTG2	2	1271214	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08		1271214	241928159	79	35602											
PXDN	7837	broad.mit.edu	37	chr2	1667444	1667444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttgacagcctggcattcGtactggccctggtcgtggag	14	10	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1667444	A	A	1667444	2	1	18	1	0	0	0	0	0	0	0	1	12955	1140	40	4		4	PXDN	2	1667444	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	396230	1667444	241531929	80	35603											
TTC15	51112	broad.mit.edu	37	chr2	3469328	3469328	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtgaaacccacagtgctGttctcagctctaaagtacgt	9	11	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3469328	C	C	3469328	1	2	18	0	1	0	0	0	0	0	0	0	16808	1392	48	4		4	TTC15	2	3469328	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1801884	3469328	239730045	81	35604											
APOB	338	broad.mit.edu	37	chr2	21230206	21230206	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatgcctgtgtttgtttttCttatactgagcttttacact	7	7	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21230206	G	G	21230206	3	3	18	1	0	0	0	0	1	0	0	0	787	912	32	4	4173	4	APOB	2	21230206	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	17760878	21230206	221969167	82	35605											
APOB	338	broad.mit.edu	37	chr2	21246397	21246397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcaaacagaatcttacGttggctacttccagttttac	7	9	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21246397	T	T	21246397	3	4	18	1	0	0	0	0	1	0	0	0	787	1159	40	3	11139	3	APOB	2	21246397	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	16191	21246397	221952976	83	35606											
APOB	338	broad.mit.edu	37	chr2	21260849	21260849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaacaacacttgcttgGcttcttctgtctctggggga	10	11	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21260849	T	T	21260849	3	4	18	1	0	0	0	0	1	0	0	0	787	1203	42	3	13273	3	APOB	2	21260849	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	14452	21260849	221938524	84	35607											
OTOF	9381	broad.mit.edu	37	chr2	26691312	26691312	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctccttctcctccaagtCaattccagagggctcttgtt	6	14	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26691312	A	A	26691312	3	1	18	1	0	0	0	0	1	0	0	0	11397	826	29	3	2180	3	OTOF	2	26691312	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	5430463	26691312	216508061	85	35608											
GCKR	2646	broad.mit.edu	37	chr2	27723938	27723938	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagggttctgatgcacttGagccttgggcaccactcaga	12	10	2	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27723938	A	A	27723938	1	1	18	0	1	0	0	0	0	0	0	0	6356	1305	45	4		4	GCKR	2	27723938	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1032626	27723938	215475435	86	35609											
GCKR	2646	broad.mit.edu	37	chr2	27731038	27731039	+	Missense_Mutation	DNP	CC	AA	AA													tctttctctctctccagatcCctctgaagaagctctttccc							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	27731039	AA	AA	27731038	3	1	18	1	0	0	0	0	1	0	0	0	6356	623	22	2	1404	2	GCKR	2	27731038	Missense_Mutation	DNP	CC	TCGA-05-4418-01A-01D-1265-08	7100	27731038	215468335	87	35610											
SPAST	6683	broad.mit.edu	37	chr2	32289089	32289089	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttgtaggcttcgcgctGctgcgtttggtcgccttcca	12	12	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32289089	T	T	32289089	2	4	18	1	0	0	0	0	0	0	0	1	15113	1306	46	3		3	SPAST	2	32289089	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	4558051	32289089	210910284	88	35611											
LTBP1	4052	broad.mit.edu	37	chr2	33499869	33499869	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctctcttccaggaacaatCcttcaagtacgcgaggagaa	8	11	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33499869	A	A	33499869	1	1	18	0	1	0	0	0	0	0	0	0	9160	870	30	3		3	LTBP1	2	33499869	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1210780	33499869	209699504	89	35612											
C2orf56	55471	broad.mit.edu	37	chr2	37474741	37474742	+	Frame_Shift_Ins	INS	-	A	A													ataaaacaacacacatttttINSaaaaaatatgggtattgatg							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37474742	A	A	37474741	7	5	18	1	0	1	1	0	0	0	0	0	2199	1764	61	0	1113	0	C2orf56	2	37474741	Frame_Shift_Ins	INS	-	TCGA-05-4418-01A-01D-1265-08	3974872	37474741	205724632	90	35613											
ABCG5	64240	broad.mit.edu	37	chr2	44051409	44051409	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggagaatctttggttttgAaaggaaccattggtaacgtt	11	5	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44051409	G	G	44051409	3	3	18	1	0	0	0	0	1	0	0	0	71	246	9	5	912	5	ABCG5	2	44051409	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	6576668	44051409	199147964	91	35614											
MSH6	2956	broad.mit.edu	37	chr2	48027856	48027856	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgactgtagaattgaaccgaTgggatacagcctttgaccat	10	8	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48027856	C	C	48027856	3	2	18	1	0	0	0	0	1	0	0	0	9968	1464	51	5	2748	5	MSH6	2	48027856	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	3976447	48027856	195171517	92	35615											
USP34	9736	broad.mit.edu	37	chr2	61697854	61697854	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgccgccccccccctcccCcgcttcggatcacactgact	7	24	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61697854	G	G	61697854	1	3	18	0	1	0	0	0	0	0	0	0	17192	638	22	4		4	USP34	2	61697854	5'Flank	SNP	C	TCGA-05-4418-01A-01D-1265-08	13669998	61697854	181501519	93	35616											
GKN1	56287	broad.mit.edu	37	chr2	69204898	69204898	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggaattccatctgggatTatggaaatgtaggtagtcaa	11	6	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69204898	A	A	69204898	3	1	18	1	0	0	0	0	1	0	0	0	6488	1754	61	5	248	5	GKN1	2	69204898	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	7507044	69204898	173994475	94	35617											
DYSF	8291	broad.mit.edu	37	chr2	71797543	71797543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggacgactgaatgccaGggcccttcactgggctattt	14	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71797543	T	T	71797543	1	4	18	0	1	0	0	0	0	0	0	0	4899	1015	35	2		2	DYSF	2	71797543	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	2592645	71797543	171401830	95	35618											
DCTN1	1639	broad.mit.edu	37	chr2	74594271	74594271	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgcaatcatcagcccccagCaggagcccttctgccttatc	7	16	3	0	rs138678534	by1000genomes	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74594271	G	G	74594271	1	3	18	0	1	0	0	0	0	0	0	0	4339	725	25	4		4	DCTN1	2	74594271	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2796728	74594271	168605102	96	35619											
GNLY	10578	broad.mit.edu	37	chr2	85924772	85924772	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcccagcagatctgtgaGgacctcaggttgtgtatacc	11	11	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85924772	A	A	85924772	2	1	18	1	0	0	0	0	0	0	0	1	6603	991	35	4		4	GNLY	2	85924772	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	11330501	85924772	157274601	97	35620											
IMMT	10989	broad.mit.edu	37	chr2	86393849	86393849	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctgttctcctatctagtCttccattgcatttcccaaaa	4	12	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86393849	A	A	86393849	1	1	18	0	1	0	0	0	0	0	0	0	7788	928	32	3		3	IMMT	2	86393849	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	469077	86393849	156805524	98	35621											
FHL2	2274	broad.mit.edu	37	chr2	105977987	105977987	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgatccatttcaaagtttGgattgtgtaatatggataat	8	3	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105977987	C	C	105977987	1	2	18	0	1	0	0	0	0	0	0	0	5936	1363	47	4		4	FHL2	2	105977987	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	19584138	105977987	137221386	99	35622											
RANBP2	5903	broad.mit.edu	37	chr2	109399221	109399221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcaaacattgttcctcGgactgctgagaacttcagag	8	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109399221	T	T	109399221	3	4	18	1	0	0	0	0	1	0	0	0	13136	1116	39	1	9382	1	RANBP2	2	109399221	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3421234	109399221	133800152	100	35623											
ACOXL	55289	broad.mit.edu	37	chr2	111556667	111556667	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacagctattgatatgatGtacaaggagggtgagtcccc	12	8	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111556667	A	A	111556667	3	1	18	1	0	0	0	0	1	0	0	0	161	1377	48	4	559	4	ACOXL	2	111556667	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	2157446	111556667	131642706	101	35624											
DDX18	8886	broad.mit.edu	37	chr2	118572487	118572487	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagacccacgcgcgagcccTggcgcgttcgggcggccggg	18	15	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118572487	A	A	118572487	1	1	18	0	1	0	0	0	0	0	0	0	4378	1595	55	5		5	DDX18	2	118572487	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	7015820	118572487	124626886	102	35625											
MYO7B	4648	broad.mit.edu	37	chr2	128389269	128389269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactggccctgcagcacccGgccctccaggacgaggtcta	11	17	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128389269	T	T	128389269	2	4	18	1	0	0	0	0	0	0	0	1	10177	1103	39	1		1	MYO7B	2	128389269	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	9816782	128389269	114810104	103	35626											
WDR33	55339	broad.mit.edu	37	chr2	128481892	128481892	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catataaagctttgctatttCaatataaagcttacctagta	4	7	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128481892	A	A	128481892	1	1	18	0	1	0	0	0	0	0	0	0	17414	841	29	3		3	WDR33	2	128481892	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	92623	128481892	114717481	104	35627											
PLEKHB2	55041	broad.mit.edu	37	chr2	131953380	131953380	+	Intron	DEL	A	-	-													agtatcacatcctactccatAaaaaaggagaaagtgacagg							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131953380	-	-	131953380	6	5	18	0	1	1	0	1	0	0	0	0	12160	377	13	0		0	PLEKHB2	2	131953380	Intron	DEL	A	TCGA-05-4418-01A-01D-1265-08	3471488	131953380	111245993	105	35628											
CCDC74A	90557	broad.mit.edu	37	chr2	132288474	132288474	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgggtggcctctaggGgtgctgaccaggcgccctct	15	14	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132288474	A	A	132288474	1	1	18	0	1	0	0	0	0	0	0	0	2875	1247	43	4		4	CCDC74A	2	132288474	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	335094	132288474	110910899	106	35629											
LRP1B	53353	broad.mit.edu	37	chr2	142004803	142004803	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcataacttaccaattttaGccttgcaagatctgttgtct	6	9	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142004803	A	A	142004803	3	1	18	1	0	0	0	0	1	0	0	0	9042	971	34	4	13563	4	LRP1B	2	142004803	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	9716329	142004803	101194570	107	35630											
NEB	4703	broad.mit.edu	37	chr2	152467414	152467414	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcatggggcatggggagaGggagggagtataagaccttc	19	6	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152467414	A	A	152467414	1	1	18	0	1	0	0	0	0	0	0	0	10397	1015	35	4		4	NEB	2	152467414	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	10462611	152467414	90731959	108	35631											
TANC1	85461	broad.mit.edu	37	chr2	159860648	159860648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaccaatcacagaaatGcttcctggaatattaagtca	6	10	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159860648	T	T	159860648	1	4	18	0	1	0	0	0	0	0	0	0	15663	1334	46	3		3	TANC1	2	159860648	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	7393234	159860648	83338725	109	35632											
DPP4	1803	broad.mit.edu	37	chr2	162875206	162875206	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgaagtgagtaacagcggcGactgccctccctcccaggga	12	14	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162875206	A	A	162875206	1	1	18	0	1	0	0	0	0	0	0	0	4769	1073	37	4		4	DPP4	2	162875206	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	3014558	162875206	80324167	110	35633											
UBR3	130507	broad.mit.edu	37	chr2	170871812	170871812	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaatttagaacttgaattGattcatcgaggaggcaattt	8	6	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170871812	T	T	170871812	3	4	18	1	0	0	0	0	1	0	0	0	17029	1281	45	3	4507	3	UBR3	2	170871812	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	7996606	170871812	72327561	111	35634											
ITGA6	3655	broad.mit.edu	37	chr2	173340413	173340413	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaataccaaaccaacacaGgtaaccaaataaccgggatt	5	10	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173340413	A	A	173340413	2	1	18	1	0	0	0	0	0	0	0	1	7950	1014	35	4		4	ITGA6	2	173340413	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	2468601	173340413	69858960	112	35635											
TTN	7273	broad.mit.edu	37	chr2	179421984	179421984	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgacaaatacgtaccacaAgcatcaattgccaagactgg	7	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179421984	T	T	179421984	2	4	18	1	0	0	0	0	0	0	0	1	16861	59	3	5		5	TTN	2	179421984	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08	6081571	179421984	63777389	113	35636											
ZDBF2	57683	broad.mit.edu	37	chr2	207172862	207172862	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaagtaagttttgattctGatgaccctcttcagtcagtg	9	8	4	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207172862	T	T	207172862	3	4	18	1	0	0	0	0	1	0	0	0	17725	1290	45	3	3620	3	ZDBF2	2	207172862	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	27750878	207172862	36026511	114	35637											
FASTKD2	22868	broad.mit.edu	37	chr2	207631989	207631989	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcacagcaatgtggacaaTtgccaaaagactgtctgatg	9	8	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207631989	C	C	207631989	3	2	18	1	0	0	0	0	1	0	0	0	5743	1493	52	5	574	5	FASTKD2	2	207631989	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	459127	207631989	35567384	115	35638											
VIL1	7429	broad.mit.edu	37	chr2	219295487	219295487	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacccaccaagcacacagGtggaggtgcagaatgatggg	14	9	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219295487	T	T	219295487	3	4	18	1	0	0	0	0	1	0	0	0	17291	1261	44	3	1022	3	VIL1	2	219295487	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	11663498	219295487	23903886	116	35639											
CCDC108	255101	broad.mit.edu	37	chr2	219878823	219878823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcagaacagagaggcaGgggctctgagaccctgatgg	16	9	2	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219878823	T	T	219878823	1	4	18	0	1	0	0	0	0	0	0	0	2769	1015	35	2		2	CCDC108	2	219878823	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	583336	219878823	23320550	117	35640											
ECEL1	9427	broad.mit.edu	37	chr2	233349431	233349431	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggaacggtttgcccatctCtggggagagatgaccctgta	13	9	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233349431	A	A	233349431	1	1	18	0	1	0	0	0	0	0	0	0	4931	928	32	3		3	ECEL1	2	233349431	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	13470608	233349431	9849942	118	35641											
CHRND	1144	broad.mit.edu	37	chr2	233398943	233398943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtctgtaggccggccccCagcaagctctgagcaggccc	12	17	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233398943	A	A	233398943	3	1	18	1	0	0	0	0	1	0	0	0	3425	594	21	2	1304	2	CHRND	2	233398943	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	49512	233398943	9800430	119	35642											
CAPN10	11132	broad.mit.edu	37	chr2	241537926	241537926	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggacgtgaggtgcccttGactcttcctgtgagagcccc	13	13	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241537926	T	T	241537926	1	4	18	0	1	0	0	0	0	0	0	0	2649	1305	45	3		3	CAPN10	2	241537926	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	8138983	241537926	1661447	120	35643											
HDLBP	3069	broad.mit.edu	37	chr2	242194509	242194509	+	Frame_Shift_Del	DEL	T	-	-													tggccaggttctgccctttcTtgccaatgatgaaacggtga							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	242194509	-	-	242194509	7	5	18	1	0	1	0	1	0	0	0	0	7092	1609	56	0	2741	0	HDLBP	2	242194509	Frame_Shift_Del	DEL	T	TCGA-05-4418-01A-01D-1265-08	656583	242194509	1004864	121	35644											
CHL1	10752	broad.mit.edu	37	chr3	424293	424293	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagttcagggtcatagccgtGaacgaagtagggagaagtca	14	7	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	424293	T	T	424293	2	4	18	1	0	0	0	0	0	0	0	1	3380	1277	45	3		3	CHL1	3	424293	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08		424293	197598137	122	35645											
CHL1	10752	broad.mit.edu	37	chr3	436356	436356	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatacatttgagctgttGttcatgtttatttttttagt	6	3	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	436356	C	C	436356	1	2	18	0	1	0	0	0	0	0	0	0	3380	1392	48	4		4	CHL1	3	436356	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	12063	436356	197586074	123	35646											
GRM7	2917	broad.mit.edu	37	chr3	7620718	7620718	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactggcaatcacttccagtTtaatatcagttcagcttcta	5	10	4	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7620718	A	A	7620718	3	1	18	1	0	0	0	0	1	0	0	0	6868	1838	64	5	2155	5	GRM7	3	7620718	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	7184362	7620718	190401712	124	35647											
C3orf32	51066	broad.mit.edu	37	chr3	8667996	8667996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgttccctctccctgagCaagtgctgcatctgagaaag	9	12	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8667996	A	A	8667996	3	1	18	1	0	0	0	0	1	0	0	0	2244	710	25	3	457	3	C3orf32	3	8667996	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1047278	8667996	189354434	125	35648											
SLC6A1	6529	broad.mit.edu	37	chr3	11060301	11060301	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcgtgggccttgcggctGctgtgctatcattctggctg	15	11	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11060301	C	C	11060301	3	2	18	1	0	0	0	0	1	0	0	0	14787	1319	46	4	398	4	SLC6A1	3	11060301	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	2392305	11060301	186962129	126	35649											
PPARG	5468	broad.mit.edu	37	chr3	12458199	12458199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttttccctgttttatttGcagccattcgttatctatga	6	9	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12458199	T	T	12458199	1	4	18	0	1	0	0	0	0	0	0	0	12395	1334	46	3		3	PPARG	3	12458199	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1397898	12458199	185564231	127	35650											
TRIM71	131405	broad.mit.edu	37	chr3	32860298	32860298	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactacatcgagcgcggcccGccgggtcccggtgccgcagc	14	18	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32860298	T	T	32860298	2	4	18	1	0	0	0	0	0	0	0	1	16669	1074	38	3		3	TRIM71	3	32860298	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	20402099	32860298	165162132	128	35651											
GOLGA4	2803	broad.mit.edu	37	chr3	37317244	37317244	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggtgcagaagaagaacGcggctggagcattggatttg	16	5	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37317244	A	A	37317244	1	1	18	0	1	0	0	0	0	0	0	0	6619	1102	38	4		4	GOLGA4	3	37317244	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	4456946	37317244	160705186	129	35652											
TRAK1	22906	broad.mit.edu	37	chr3	42235266	42235266	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaataagagggaaaaagttGgacttttaccaagtatctta	8	4	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42235266	T	T	42235266	1	4	18	0	1	0	0	0	0	0	0	0	16573	1363	47	2		2	TRAK1	3	42235266	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	4918022	42235266	155787164	130	35653											
CCBP2	1238	broad.mit.edu	37	chr3	42906917	42906917	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccttcactgctgcttttCccccatcctgtatgccttct	4	17	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42906917	T	T	42906917	3	4	18	1	0	0	0	0	1	0	0	0	2760	855	30	4	925	4	CCBP2	3	42906917	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	671651	42906917	155115513	131	35654											
TGM4	7047	broad.mit.edu	37	chr3	44916184	44916184	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaagggatgatggatgcatCaaaaggtgagtgggtgaaat	16	2	1	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44916184	T	T	44916184	3	4	18	1	0	0	0	0	1	0	0	0	15955	838	29	4	16	4	TGM4	3	44916184	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2009267	44916184	153106246	132	35655											
PRSS50	29122	broad.mit.edu	37	chr3	46758935	46758935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtactcacagcggtatGggtcgactttgccttcagaa	11	11	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46758935	T	T	46758935	3	4	18	1	0	0	0	0	1	0	0	0	12737	1348	47	2	878	2	PRSS50	3	46758935	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	1842751	46758935	151263495	133	35656											
DHX30	22907	broad.mit.edu	37	chr3	47852151	47852151	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctccttgttctcaggattCcagctttccctcctggccag	7	17	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47852151	T	T	47852151	1	4	18	0	1	0	0	0	0	0	0	0	4544	870	30	4		4	DHX30	3	47852151	5'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08	1093216	47852151	150170279	134	35657											
LAMB2	3913	broad.mit.edu	37	chr3	49165960	49165961	+	Missense_Mutation	DNP	GC	CA	CA													aatgcccacacaggctgtggGcaggcacaggccctggacgc							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	49165961	CA	CA	49165960	3	2	18	1	0	0	0	0	1	0	0	0	8683	1203	42	4	3519	4	LAMB2	3	49165960	Missense_Mutation	DNP	GC	TCGA-05-4418-01A-01D-1265-08	1313809	49165960	148856470	135	35658											
SLC38A3	10991	broad.mit.edu	37	chr3	50256083	50256083	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggacccgtttgacgtcctGatcctgtgtgtgcgcgtggc	15	11	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50256083	T	T	50256083	2	4	18	1	0	0	0	0	0	0	0	1	14719	1277	45	3		3	SLC38A3	3	50256083	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	1090123	50256083	147766347	136	35659											
GRM2	2912	broad.mit.edu	37	chr3	51743114	51743114	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctgggtgggctgttcCcagtgcaccagaagggcggc	18	10	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51743114	T	T	51743114	3	4	18	1	0	0	0	0	1	0	0	0	6863	623	22	4	117	4	GRM2	3	51743114	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1487031	51743114	146279316	137	35660											
APPL1	26060	broad.mit.edu	37	chr3	57274406	57274406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atataaaatatatcagaaccAtttttactagattatgttta	3	4	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57274406	T	T	57274406	1	4	18	0	1	0	0	0	0	0	0	0	819	232	8	5		5	APPL1	3	57274406	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	5531292	57274406	140748024	138	35661											
RPP14	11102	broad.mit.edu	37	chr3	58296435	58296435	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttggaggccgaggtgggcaGatcatgaggtcaagagatcg	17	6	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58296435	T	T	58296435	1	4	18	0	1	0	0	0	0	0	0	0	13720	957	33	3		3	RPP14	3	58296435	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1022029	58296435	139725995	139	35662											
EPHA6	285220	broad.mit.edu	37	chr3	97124023	97124023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgataggtgtggtaaggaagGactgggcatcccaaaatagc	14	6	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97124023	T	T	97124023	3	4	18	1	0	0	0	0	1	0	0	0	5213	1174	41	3	1658	3	EPHA6	3	97124023	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	38827588	97124023	100898407	140	35663											
MINA	84864	broad.mit.edu	37	chr3	97685865	97685865	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcctagttagaatgcattTagaccaaagaggtgctaccc	8	9	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97685865	C	C	97685865	1	2	18	0	1	0	0	0	0	0	0	0	9679	1769	61	5		5	MINA	3	97685865	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	561842	97685865	100336565	141	35664											
GUCA1C	9626	broad.mit.edu	37	chr3	108634993	108634993	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatcattgtttatatcgatCttatggaacaccaagttgat	6	8	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108634993	G	G	108634993	3	3	18	1	0	0	0	0	1	0	0	0	6955	912	32	4	214	4	GUCA1C	3	108634993	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	10949128	108634993	89387437	142	35665											
GTF2E1	2960	broad.mit.edu	37	chr3	120489844	120489844	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgttttaactacctgtacCttggagaacaagagtgggta	10	7	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120489844	G	G	120489844	1	3	18	0	1	0	0	0	0	0	0	0	6921	696	24	4		4	GTF2E1	3	120489844	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	11854851	120489844	77532586	143	35666											
ALDH1L1	10840	broad.mit.edu	37	chr3	125856491	125856492	+	Intron	INS	-	C	C													tggccccactgtactgacatINSccccaggctatcccgggtgc							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125856492	C	C	125856491	6	5	18	0	1	1	1	0	0	0	0	0	494	1450	50	0		0	ALDH1L1	3	125856491	Intron	INS	-	TCGA-05-4418-01A-01D-1265-08	5366647	125856491	72165939	144	35667											
DNAJC13	23317	broad.mit.edu	37	chr3	132225951	132225951	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagtctttttaagtgctGtgacatgtatcacaccacat	6	10	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132225951	C	C	132225951	1	2	18	0	1	0	0	0	0	0	0	0	4672	1392	48	4		4	DNAJC13	3	132225951	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	6369460	132225951	65796479	145	35668											
IL20RB	53833	broad.mit.edu	37	chr3	136700997	136700997	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgtgccctcctctctttGacagggagtacgagagcctg	11	13	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700997	T	T	136700997	1	4	18	0	1	0	0	0	0	0	0	0	7739	1305	45	3		3	IL20RB	3	136700997	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	4475046	136700997	61321433	146	35669											
TRIM42	287015	broad.mit.edu	37	chr3	140409919	140409919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctctgtggacaaattcGggacataatgcagcaaaatc	11	8	1	0	rs115301879	byFrequency;by1000genomes	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140409919	T	T	140409919	3	4	18	1	0	0	0	0	1	0	0	0	16641	1116	39	1	1984	1	TRIM42	3	140409919	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3708922	140409919	57612511	147	35670											
MME	4311	broad.mit.edu	37	chr3	154884701	154884701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttgtagtcttcccagcCggcattctgcagcccccctt	7	18	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154884701	A	A	154884701	2	1	18	1	0	0	0	0	0	0	0	1	9738	639	23	1		1	MME	3	154884701	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	14474782	154884701	43137729	148	35671											
SI	6476	broad.mit.edu	37	chr3	164767647	164767647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaaccttgaataaagctgGaaacttcattcatgtcctga	7	8	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164767647	T	T	164767647	3	4	18	1	0	0	0	0	1	0	0	0	14410	1174	41	3	4094	3	SI	3	164767647	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	9882946	164767647	33254783	149	35672											
FNDC3B	64778	broad.mit.edu	37	chr3	172003851	172003851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttttttttttccaccaCacagtaggtaaggaaaaggg	8	7	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172003851	T	T	172003851	1	4	18	0	1	0	0	0	0	0	0	0	6028	493	17	4		4	FNDC3B	3	172003851	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	7236204	172003851	26018579	150	35673											
HTR3C	170572	broad.mit.edu	37	chr3	183777928	183777928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgactgagcctctgtcCtctccacaggcccaaaggag	9	15	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183777928	A	A	183777928	1	1	18	0	1	0	0	0	0	0	0	0	7516	696	24	2		2	HTR3C	3	183777928	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	11774077	183777928	14244502	151	35674											
IGF2BP2	10644	broad.mit.edu	37	chr3	185363402	185363402	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaatttccctgatcttgcGctgtgcagtctgcagcaagg	10	11	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185363402	A	A	185363402	3	1	18	1	0	0	0	0	1	0	0	0	7644	1087	38	4	86	4	IGF2BP2	3	185363402	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	1585474	185363402	12659028	152	35675											
ZNF718	255403	broad.mit.edu	37	chr4	155375	155375	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctcatcccttaatgaAcataagagaattcatgctgg	8	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155375	T	T	155375	3	4	18	1	0	0	0	0	1	0	0	0	18248	40	2	5	914	5	ZNF718	4	155375	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08		155375	190998901	153	35676											
PIGG	54872	broad.mit.edu	37	chr4	514917	514919	+	In_Frame_Del	DEL	AGC	-	-													cagactgtacttggaggaaaAgcattcagaagtcctattca							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	514919	-	-	514917	7	5	18	1	0	1	0	1	0	0	0	0	11983	72	3	0	1213	0	PIGG	4	514917	In_Frame_Del	DEL	AGC	TCGA-05-4418-01A-01D-1265-08	359542	514917	190639359	154	35677											
FGFRL1	53834	broad.mit.edu	37	chr4	1018528	1018528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccggcgtcccacccaccgGgtggggccccacccttccct	11	22	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1018528	T	T	1018528	1	4	18	0	1	0	0	0	0	0	0	0	5926	1247	43	2		2	FGFRL1	4	1018528	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	503611	1018528	190135748	155	35678											
HAUS3	79441	broad.mit.edu	37	chr4	2242588	2242591	+	Frame_Shift_Del	DEL	CAGT	-	-													cttcaacgccctcaaacaacCagtcaaagtcttctccatta							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2242591	-	-	2242588	7	5	18	1	0	1	0	1	0	0	0	0	7033	595	21	0	1741	0	HAUS3	4	2242588	Frame_Shift_Del	DEL	CAGT	TCGA-05-4418-01A-01D-1265-08	1224060	2242588	188911688	156	35679											
TXK	7294	broad.mit.edu	37	chr4	48106930	48106930	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattacctcttgtctcaaTagatgttctgcctgatttct	6	9	4	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48106930	C	C	48106930	2	2	18	1	0	0	0	0	0	0	0	1	16912	1393	49	5		5	TXK	4	48106930	Silent	SNP	T	TCGA-05-4418-01A-01D-1265-08	45864342	48106930	143047346	157	35680											
FRYL	285527	broad.mit.edu	37	chr4	48536685	48536685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgattgctgcatactggaCaatcctttctctaacagcta	6	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48536685	A	A	48536685	3	1	18	1	0	0	0	0	1	0	0	0	6124	477	17	3	2523	3	FRYL	4	48536685	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	429755	48536685	142617591	158	35681											
KIAA1211	57482	broad.mit.edu	37	chr4	57179457	57179457	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccatccccctggccatcgCtcgcctggacaacagtgccg	10	18	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57179457	T	T	57179457	3	4	18	1	0	0	0	0	1	0	0	0	8285	797	28	4	463	4	KIAA1211	4	57179457	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	8642772	57179457	133974819	159	35682											
LPHN3	23284	broad.mit.edu	37	chr4	62641177	62641177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatgtcttcatttcttgCatttgaagtactcttcgatg	6	7	4	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62641177	A	A	62641177	1	1	18	0	1	0	0	0	0	0	0	0	9004	725	25	3		3	LPHN3	4	62641177	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	5461720	62641177	128513099	160	35683											
TECRL	253017	broad.mit.edu	37	chr4	65146835	65146835	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacttaaattagcacataCataaatggaatctagtaatt	4	5	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65146835	T	T	65146835	1	4	18	0	1	0	0	0	0	0	0	0	15868	493	17	4		4	TECRL	4	65146835	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2505658	65146835	126007441	161	35684											
GNRHR	2798	broad.mit.edu	37	chr4	68610569	68610569	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgaaagttttctctttGgtactctgctagccttctaa	6	8	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68610569	T	T	68610569	1	4	18	0	1	0	0	0	0	0	0	0	6613	1363	47	2		2	GNRHR	4	68610569	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	3463734	68610569	122543707	162	35685											
AMTN	401138	broad.mit.edu	37	chr4	71390668	71390668	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaatgtacaacagcaacTgcacccacatgtaagttgaa	8	9	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71390668	G	G	71390668	3	3	18	1	0	0	0	0	1	0	0	0	590	1580	55	5	298	5	AMTN	4	71390668	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	2780099	71390668	119763608	163	35686											
MTHFD2L	441024	broad.mit.edu	37	chr4	75065547	75065547	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaatatgcaatggaattgCcccagaaaaagatgtagatg	9	6	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75065547	T	T	75065547	3	4	18	1	0	0	0	0	1	0	0	0	10024	739	26	4	502	4	MTHFD2L	4	75065547	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3674879	75065547	116088729	164	35687											
ANXA3	306	broad.mit.edu	37	chr4	79522696	79522696	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacacgccggcctttttaGccgaaagactgcatcgagcc	11	13	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79522696	A	A	79522696	3	1	18	1	0	0	0	0	1	0	0	0	719	971	34	4	801	4	ANXA3	4	79522696	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	4457149	79522696	111631580	165	35688											
GK2	2712	broad.mit.edu	37	chr4	80328679	80328679	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttggaagaaggtccattgGaatttcaaaaaagtcacaga	9	5	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80328679	A	A	80328679	3	1	18	1	0	0	0	0	1	0	0	0	6485	1174	41	4	989	4	GK2	4	80328679	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	805983	80328679	110825597	166	35689											
HERC3	8916	broad.mit.edu	37	chr4	89574037	89574038	+	Frame_Shift_Ins	INS	-	G	G													agatggccagttcttcacctINSggggaaagaacagccatggg							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89574038	G	G	89574037	7	5	18	1	0	1	1	0	0	0	0	0	7126	1580	55	0	495	0	HERC3	4	89574037	Frame_Shift_Ins	INS	-	TCGA-05-4418-01A-01D-1265-08	9245358	89574037	101580239	167	35690											
HADH	3033	broad.mit.edu	37	chr4	108935446	108935446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggataaattacaggcttcGtggacactttgagaacagat	10	6	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108935446	T	T	108935446	1	4	18	0	1	0	0	0	0	0	0	0	7008	1160	40	3		3	HADH	4	108935446	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	19361409	108935446	82218830	168	35691											
SEC24B	10427	broad.mit.edu	37	chr4	110454835	110454836	+	Frame_Shift_Ins	INS	-	A	A													attttgcatcaataccacagINSaaaatggtcagtagatttta							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110454836	A	A	110454835	7	5	18	1	0	1	1	0	0	0	0	0	14108	933	33	0	3668	0	SEC24B	4	110454835	Frame_Shift_Ins	INS	-	TCGA-05-4418-01A-01D-1265-08	1519389	110454835	80699441	169	35692											
SEC24D	9871	broad.mit.edu	37	chr4	119745843	119745843	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtccaggaggtgggggAcccggaggcaacattcccct	17	11	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119745843	G	G	119745843	2	3	18	1	0	0	0	0	0	0	0	1	14110	262	10	5		5	SEC24D	4	119745843	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08	9291008	119745843	71408433	170	35693											
TRPC3	7222	broad.mit.edu	37	chr4	122853479	122853479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcgttgctgagctctaGggccgtaagcaccgggtcct	13	13	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122853479	T	T	122853479	3	4	18	1	0	0	0	0	1	0	0	0	16704	991	35	2	1875	2	TRPC3	4	122853479	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3107636	122853479	68300797	171	35694											
PLK4	10733	broad.mit.edu	37	chr4	128814717	128814717	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cataatttcagaagaggaaaGgaaaactaggagtgctccct	10	7	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128814717	A	A	128814717	3	1	18	1	0	0	0	0	1	0	0	0	12193	1000	35	4	2418	4	PLK4	4	128814717	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	5961238	128814717	62339559	172	35695											
DCHS2	54798	broad.mit.edu	37	chr4	155278377	155278377	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggctaacctctacttgaagTgccttagcagaggtaaaaac	9	9	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155278377	G	G	155278377	3	3	18	1	0	0	0	0	1	0	0	0	4321	1696	59	5	8132	5	DCHS2	4	155278377	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	26463660	155278377	35875899	173	35696											
TDO2	6999	broad.mit.edu	37	chr4	156831138	156831138	+	Intron	DEL	C	-	-													tcttctcctctcctctctttCccttcccttgcctttccttc							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156831138	-	-	156831138	6	5	18	0	1	1	0	1	0	0	0	0	15849	870	30	0		0	TDO2	4	156831138	Intron	DEL	C	TCGA-05-4418-01A-01D-1265-08	1552761	156831138	34323138	174	35697											
FSTL5	56884	broad.mit.edu	37	chr4	162376242	162376242	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccactggttgggtgtggatCgtgtggtgaggcacattccc	15	10	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162376242	A	A	162376242	2	1	18	1	0	0	0	0	0	0	0	1	6140	871	31	3		3	FSTL5	4	162376242	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	5545104	162376242	28778034	175	35698											
CASP3	836	broad.mit.edu	37	chr4	185550702	185550702	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatggatagctgattttagTtgattctataaattattatg	7	4	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185550702	C	C	185550702	1	2	18	0	1	0	0	0	0	0	0	0	2698	1740	60	5		5	CASP3	4	185550702	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	23174460	185550702	5603574	176	35699											
FBXL7	23194	broad.mit.edu	37	chr5	15936997	15936997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagggcatcacggaccacgGtgtggagtacctcgccaaga	14	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15936997	T	T	15936997	3	4	18	1	0	0	0	0	1	0	0	0	5781	1261	44	3	1192	3	FBXL7	5	15936997	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08		15936997	164978263	177	35700											
BASP1	10409	broad.mit.edu	37	chr5	17275921	17275921	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctagttccacacccaaggCccagggccccgcagcctctg	10	19	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17275921	T	T	17275921	3	4	18	1	0	0	0	0	1	0	0	0	1322	739	26	4	598	4	BASP1	5	17275921	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1338924	17275921	163639339	178	35701											
PRDM9	56979	broad.mit.edu	37	chr5	23510018	23510018	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttagaacaaaatttttgCttcttttcaggtctcagagc	6	7	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23510018	T	T	23510018	1	4	18	0	1	0	0	0	0	0	0	0	12569	812	28	4		4	PRDM9	5	23510018	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	6234097	23510018	157405242	179	35702											
CDH6	1004	broad.mit.edu	37	chr5	31323229	31323229	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgacacggaccccactgcCccgccatacgactccttggc	8	18	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323229	A	A	31323229	2	1	18	1	0	0	0	0	0	0	0	1	3144	610	22	2		2	CDH6	5	31323229	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	7813211	31323229	149592031	180	35703											
SPEF2	79925	broad.mit.edu	37	chr5	35700681	35700681	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctggaagaagctcttaCaggctgcaatagaaacctca	9	10	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35700681	T	T	35700681	3	4	18	1	0	0	0	0	1	0	0	0	15153	478	17	4	2308	4	SPEF2	5	35700681	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	4377452	35700681	145214579	181	35704											
UGT3A1	133688	broad.mit.edu	37	chr5	35968187	35968187	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttttgatgatcttcaGgtgaaaaccacctgataact	6	8	3	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35968187	C	C	35968187	3	2	18	1	0	0	0	0	1	0	0	0	17089	1000	35	4	1428	4	UGT3A1	5	35968187	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	267506	35968187	144947073	182	35705											
C7	730	broad.mit.edu	37	chr5	40955692	40955692	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaaagcaataggaagcagtCatgtttatttgcatgaggaa	10	4	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40955692	A	A	40955692	1	1	18	0	1	0	0	0	0	0	0	0	2400	841	29	3		3	C7	5	40955692	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	4987505	40955692	139959568	183	35706											
NNT	23530	broad.mit.edu	37	chr5	43656049	43656049	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacttgcatagctgagtacAttatagaatatccacatttt	5	7	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43656049	G	G	43656049	3	3	18	1	0	0	0	0	1	0	0	0	10605	217	8	5	2221	5	NNT	5	43656049	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	2700357	43656049	137259211	184	35707											
HCN1	348980	broad.mit.edu	37	chr5	45304005	45304005	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catatctggaagaaaaacatGctgaaatttaaaatatatac	5	5	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45304005	C	C	45304005	1	2	18	0	1	0	0	0	0	0	0	0	7062	1334	46	4		4	HCN1	5	45304005	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1647956	45304005	135611255	185	35708											
FST	10468	broad.mit.edu	37	chr5	52781100	52781100	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccatttaaggctttcccAggcaatccctagggaatgga	10	11	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52781100	G	G	52781100	1	3	18	0	1	0	0	0	0	0	0	0	6136	203	7	5		5	FST	5	52781100	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	7477095	52781100	128134160	186	35709											
SKIV2L2	23517	broad.mit.edu	37	chr5	54618257	54618257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacccatttttggaaagaaGcccaggatagaagagtcaat	10	7	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54618257	T	T	54618257	3	4	18	1	0	0	0	0	1	0	0	0	14473	962	34	3	243	3	SKIV2L2	5	54618257	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	1837157	54618257	126297003	187	35710											
GPBP1	65056	broad.mit.edu	37	chr5	56527069	56527069	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaaagccaaggactacAtgaaaacaacatacctgaca	7	9	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56527069	T	T	56527069	3	4	18	1	0	0	0	0	1	0	0	0	6660	217	8	5	367	5	GPBP1	5	56527069	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	1908812	56527069	124388191	188	35711											
SV2C	22987	broad.mit.edu	37	chr5	75505590	75505590	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccatacccactgtgttctCgtactttgctgaagtcctgg	9	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75505590	A	A	75505590	4	1	18	1	0	0	0	0	0	1	0	0	15537	893	31	3	801	3	SV2C	5	75505590	Nonsense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	18978521	75505590	105409670	189	35712											
RASGRF2	5924	broad.mit.edu	37	chr5	80376481	80376481	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgtgcgtaatcaccagtAcagcctgcaagttctcgcca	8	12	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80376481	G	G	80376481	3	3	18	1	0	0	0	0	1	0	0	0	13181	391	14	5	1060	5	RASGRF2	5	80376481	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	4870891	80376481	100538779	190	35713											
RASGRF2	5924	broad.mit.edu	37	chr5	80503114	80503114	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccttgtcggccatggagcTggcagaacagatcaccctcc	11	14	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80503114	C	C	80503114	3	2	18	1	0	0	0	0	1	0	0	0	13181	1580	55	5	3099	5	RASGRF2	5	80503114	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	126633	80503114	100412146	191	35714											
ATP6AP1L	92270	broad.mit.edu	37	chr5	81608494	81608494	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtttgcgccgagtcgagAtcatttccaacaattcaatc	7	10	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81608494	G	G	81608494	3	3	18	1	0	0	0	0	1	0	0	0	1170	333	12	5	206	5	ATP6AP1L	5	81608494	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	1105380	81608494	99306766	192	35715											
TTC37	9652	broad.mit.edu	37	chr5	94863597	94863597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttataaaagtgcagatgtgGtgaattcatacctctaacac	7	8	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94863597	T	T	94863597	1	4	18	0	1	0	0	0	0	0	0	0	16831	1276	44	3		3	TTC37	5	94863597	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	13255103	94863597	86051663	193	35716											
SLCO6A1	133482	broad.mit.edu	37	chr5	101748746	101748746	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accctgcaaagcagggagaaAaatattcaatatcatctctt	6	9	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101748746	T	T	101748746	3	4	18	1	0	0	0	0	1	0	0	0	14846	14	1	5	605	5	SLCO6A1	5	101748746	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	6885149	101748746	79166514	194	35717											
MEGF10	84466	broad.mit.edu	37	chr5	126754978	126754978	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgatcctggtcacgttaTctcctaaagacacaaaaaag	6	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126754978	C	C	126754978	1	2	18	0	1	0	0	0	0	0	0	0	9553	1450	50	5		5	MEGF10	5	126754978	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	25006232	126754978	54160282	195	35718											
ACSL6	23305	broad.mit.edu	37	chr5	131308464	131308464	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagatactatcattcctgaTgattccactccggacctcgg	7	14	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131308464	C	C	131308464	3	2	18	1	0	0	0	0	1	0	0	0	181	1464	51	5	913	5	ACSL6	5	131308464	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	4553486	131308464	49606796	196	35719											
LOC153328	153328	broad.mit.edu	37	chr5	135188390	135188390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagaggccagtcctcccCgcacgctgtcagacctgctc	10	18	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135188390	A	A	135188390	3	1	18	1	0	0	0	0	1	0	0	0	8949	652	23	1	315	1	LOC153328	5	135188390	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3879926	135188390	45726870	197	35720											
HNRNPA0	10949	broad.mit.edu	37	chr5	137089549	137089549	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgccgtccacggcatgGggcgaggcggccatggcggc	19	12	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137089549	A	A	137089549	2	1	18	1	0	0	0	0	0	0	0	1	7323	1219	43	4		4	HNRNPA0	5	137089549	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	1901159	137089549	43825711	198	35721											
PCDHA6	56142	broad.mit.edu	37	chr5	140207895	140207895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccaaagaccgcgaggaCcttctggaggtaaatctgca	11	12	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140207895	A	A	140207895	3	1	18	1	0	0	0	0	1	0	0	0	11622	506	18	3	221	3	PCDHA6	5	140207895	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3118346	140207895	40707365	199	35722											
PCDHA12	56137	broad.mit.edu	37	chr5	140255747	140255747	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtctgtccagattcaaatAaccgtcctggatgtgaatga	11	8	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140255747	G	G	140255747	3	3	18	1	0	0	0	0	1	0	0	0	11616	352	13	5	692	5	PCDHA12	5	140255747	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	47852	140255747	40659513	200	35723											
PCDHB4	56131	broad.mit.edu	37	chr5	140502904	140502904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acataaccgtgcaggtctccGacgtcaatgacaacgccccc	8	16	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140502904	T	T	140502904	3	4	18	1	0	0	0	0	1	0	0	0	11638	1058	37	3	1326	3	PCDHB4	5	140502904	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	247157	140502904	40412356	201	35724											
PCDHB5	26167	broad.mit.edu	37	chr5	140517152	140517152	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcgtggcagtgcggctGtgcaggaggagcagggcggc	20	9	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140517152	A	A	140517152	2	1	18	1	0	0	0	0	0	0	0	1	11639	1364	48	4		4	PCDHB5	5	140517152	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	14248	140517152	40398108	202	35725											
PCDHB7	56129	broad.mit.edu	37	chr5	140553013	140553013	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattggtgctgaatcaagtGctggatcgggaagagatacc	14	6	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140553013	T	T	140553013	2	4	18	1	0	0	0	0	0	0	0	1	11641	1306	46	3		3	PCDHB7	5	140553013	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	35861	140553013	40362247	203	35726											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736243	140736243	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaatcacttactccctggcCgaagacaccttccagggtgc	9	15	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140736243	A	A	140736243	2	1	18	1	0	0	0	0	0	0	0	1	11650	639	23	1		1	PCDHGA4	5	140736243	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	183230	140736243	40179017	204	35727											
PCDHGA9	56107	broad.mit.edu	37	chr5	140784669	140784669	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctggccctcaggctgaGgcactggcactcctcgcatc	12	16	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140784669	A	A	140784669	3	1	18	1	0	0	0	0	1	0	0	0	11655	1000	35	4	2152	4	PCDHGA9	5	140784669	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	48426	140784669	40130591	205	35728											
PCDH12	51294	broad.mit.edu	37	chr5	141335023	141335023	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatcatcgcctccttgtcCacatctttgtgggactgccc	7	16	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141335023	T	T	141335023	2	4	18	1	0	0	0	0	0	0	0	1	11604	581	21	4		4	PCDH12	5	141335023	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	550354	141335023	39580237	206	35729											
PLAC8L1	153770	broad.mit.edu	37	chr5	145464208	145464208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccagggtcctgtacaatGttacctcctggcccttcaac	7	16	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145464208	T	T	145464208	1	4	18	0	1	0	0	0	0	0	0	0	12111	1392	48	3		3	PLAC8L1	5	145464208	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	4129185	145464208	35451052	207	35730											
DPYSL3	1809	broad.mit.edu	37	chr5	146777432	146777432	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcaggggtgagaagcaaAgccacagtaagggtagagaa	17	5	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146777432	C	C	146777432	1	2	18	0	1	0	0	0	0	0	0	0	4788	87	3	5		5	DPYSL3	5	146777432	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	1313224	146777432	34137828	208	35731											
TCOF1	6949	broad.mit.edu	37	chr5	149771185	149771185	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccagaaagccagtgaggctCagcctcctgttgccaggacc	11	15	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149771185	A	A	149771185	3	1	18	1	0	0	0	0	1	0	0	0	15830	827	29	3	3362	3	TCOF1	5	149771185	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2993753	149771185	31144075	209	35732											
GPX3	2878	broad.mit.edu	37	chr5	150407000	150407000	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catttctcaacaggtatgtcCgaccaggtggaggctttgtc	11	10	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150407000	G	G	150407000	3	3	18	1	0	0	0	0	1	0	0	0	6807	644	23	4	381	4	GPX3	5	150407000	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	635815	150407000	30508260	210	35733											
ITK	3702	broad.mit.edu	37	chr5	156644821	156644821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctggctgctcacttccgGttgggtccattagttttcat	9	13	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156644821	T	T	156644821	1	4	18	0	1	0	0	0	0	0	0	0	7979	1276	44	3		3	ITK	5	156644821	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	6237821	156644821	24270439	211	35734											
SOX30	11063	broad.mit.edu	37	chr5	157078599	157078599	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttccaacttgaccaccctgGaggctctaggaccggtttcg	10	14	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157078599	A	A	157078599	3	1	18	1	0	0	0	0	1	0	0	0	15066	1174	41	4	1793	4	SOX30	5	157078599	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	433778	157078599	23836661	212	35735											
LSM11	134353	broad.mit.edu	37	chr5	157174552	157174552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagaaggatttcaaaaCaaacctgatttattgggcct	9	7	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157174552	A	A	157174552	1	1	18	0	1	0	0	0	0	0	0	0	9139	493	17	3		3	LSM11	5	157174552	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	95953	157174552	23740708	213	35736											
LSM11	134353	broad.mit.edu	37	chr5	157181018	157181018	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgttcctctaggcacttActgatgtggatgagacctac	11	10	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157181018	G	G	157181018	3	3	18	1	0	0	0	0	1	0	0	0	9139	391	14	5	605	5	LSM11	5	157181018	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	6466	157181018	23734242	214	35737											
GABRA1	2554	broad.mit.edu	37	chr5	161324188	161324188	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcaaccagctacaccccTaatttggccaggggcgaccc	9	16	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161324188	C	C	161324188	2	2	18	1	0	0	0	0	0	0	0	1	6220	1509	53	5		5	GABRA1	5	161324188	Silent	SNP	T	TCGA-05-4418-01A-01D-1265-08	4143170	161324188	19591072	215	35738											
DOCK2	1794	broad.mit.edu	37	chr5	169507382	169507382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaactgtgtctacacaaCaaagtgggccaggcatcctg	12	10	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169507382	A	A	169507382	1	1	18	0	1	0	0	0	0	0	0	0	4727	493	17	3		3	DOCK2	5	169507382	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	8183194	169507382	11407878	216	35739											
RANBP17	64901	broad.mit.edu	37	chr5	170679606	170679606	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacctgaagagatttaaatAtaaggatcaacttcatcgat	6	7	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170679606	G	G	170679606	1	3	18	0	1	0	0	0	0	0	0	0	13135	464	16	5		5	RANBP17	5	170679606	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	1172224	170679606	10235654	217	35740											
HK3	3101	broad.mit.edu	37	chr5	176308305	176308305	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgcacacccagactcaccgCgggtgcagcttgtagagcgt	12	15	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176308305	G	G	176308305	2	3	18	1	0	0	0	0	0	0	0	1	7259	755	27	4		4	HK3	5	176308305	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	5628699	176308305	4606955	218	35741											
MGAT4B	11282	broad.mit.edu	37	chr5	179225653	179225653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcacagcacccagggcCcagcagagaaaggccaggcc	12	16	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179225653	A	A	179225653	1	1	18	0	1	0	0	0	0	0	0	0	9639	638	22	2		2	MGAT4B	5	179225653	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2917348	179225653	1689607	219	35742											
RASGEF1C	255426	broad.mit.edu	37	chr5	179541565	179541565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaagagggggcaggtcGgccccagccggccctccaca	15	14	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179541565	T	T	179541565	1	4	18	0	1	0	0	0	0	0	0	0	13179	1131	39	1		1	RASGEF1C	5	179541565	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	315912	179541565	1373695	220	35743											
MAPK9	5601	broad.mit.edu	37	chr5	179666965	179666965	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctctttcttccaactggGcatcataaatttgaggtggt	9	8	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179666965	A	A	179666965	3	1	18	1	0	0	0	0	1	0	0	0	9379	1203	42	4	272	4	MAPK9	5	179666965	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	125400	179666965	1248295	221	35744											
CNOT6	57472	broad.mit.edu	37	chr5	180001285	180001285	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggtatggccactgaggAtttttgcttgcttaagaatg	13	5	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180001285	T	T	180001285	1	4	18	0	1	0	0	0	0	0	0	0	3654	348	12	5		5	CNOT6	5	180001285	3'UTR	SNP	A	TCGA-05-4418-01A-01D-1265-08	334320	180001285	913975	222	35745											
GCNT2	2651	broad.mit.edu	37	chr6	10556946	10556946	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgactttcccttggcatAtataatggtcatccatcatc	6	11	2	1	rs55988612		TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10556946	G	G	10556946	1	3	18	0	1	0	0	0	0	0	0	0	6363	449	16	5		5	GCNT2	6	10556946	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08		10556946	160558121	223	35746											
ALDH5A1	7915	broad.mit.edu	37	chr6	24504939	24504939	+	Intron	DEL	G	-	-													tcagagtccctcaagttggcGggggggtcaggtgttctgag							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24504939	-	-	24504939	6	5	18	0	1	1	0	1	0	0	0	0	502	1131	39	0		0	ALDH5A1	6	24504939	Intron	DEL	G	TCGA-05-4418-01A-01D-1265-08	13947993	24504939	146610128	224	35747											
UNC5CL	222643	broad.mit.edu	37	chr6	41021223	41021224	+	Intron	DNP	CC	AG	AG													tgagattgtcacagggtaagCctcagatgtgggtcagggtt							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	41021224	AG	AG	41021223	1	1	18	0	1	0	0	0	0	0	0	0	17120	754	26	3		3	UNC5CL	6	41021223	Intron	DNP	CC	TCGA-05-4418-01A-01D-1265-08	16516284	41021223	130093844	225	35748											
KCNQ5	56479	broad.mit.edu	37	chr6	73879384	73879384	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttactctgtgagtatcCcgccatttccacgtgagaaa	8	12	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73879384	A	A	73879384	1	1	18	0	1	0	0	0	0	0	0	0	8156	638	22	2		2	KCNQ5	6	73879384	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	32858161	73879384	97235683	226	35749											
SENP6	26054	broad.mit.edu	37	chr6	76385774	76385774	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaaataaattaacaagtaAgttgtgtaaaacagattata	6	2	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76385774	C	C	76385774	1	2	18	0	1	0	0	0	0	0	0	0	14163	87	3	5		5	SENP6	6	76385774	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	2506390	76385774	94729293	227	35750											
SENP6	26054	broad.mit.edu	37	chr6	76385785	76385785	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacaagtaagttgtgtaaaAcagattataatagataataa	6	2	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76385785	G	G	76385785	1	3	18	0	1	0	0	0	0	0	0	0	14163	58	2	5		5	SENP6	6	76385785	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	11	76385785	94729282	228	35751											
FHL5	9457	broad.mit.edu	37	chr6	97053871	97053871	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatagggacaaagcctttgaTctccaaagagagtggcaatt	10	7	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97053871	A	A	97053871	3	1	18	1	0	0	0	0	1	0	0	0	5938	1435	50	5	438	5	FHL5	6	97053871	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	20668086	97053871	74061196	229	35752											
FOXO3	2309	broad.mit.edu	37	chr6	108985039	108985039	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcaagcacagagttggatGaagtccaggacgatgatgcg	15	7	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108985039	A	A	108985039	3	1	18	1	0	0	0	0	1	0	0	0	6084	1291	45	4	1009	4	FOXO3	6	108985039	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	11931168	108985039	62130028	230	35753											
AMD1	262	broad.mit.edu	37	chr6	111214177	111214177	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatgttagctttgaaacaaActtaagtcagacctcctatg	6	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111214177	T	T	111214177	3	4	18	1	0	0	0	0	1	0	0	0	566	43	2	5	803	5	AMD1	6	111214177	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	2229138	111214177	59900890	231	35754											
GPRC6A	222545	broad.mit.edu	37	chr6	117121759	117121759	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggttaccttaagattcctGaactcattttttgtttcctg	6	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117121759	T	T	117121759	3	4	18	1	0	0	0	0	1	0	0	0	6794	1281	45	3	1256	3	GPRC6A	6	117121759	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	5907582	117121759	53993308	232	35755											
THEMIS	387357	broad.mit.edu	37	chr6	128134393	128134393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctcttcaatggaaagatCcctgacagacaccttcacat	6	13	3	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128134393	A	A	128134393	3	1	18	1	0	0	0	0	1	0	0	0	15983	855	30	3	665	3	THEMIS	6	128134393	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	11012634	128134393	42980674	233	35756											
TAB2	23118	broad.mit.edu	37	chr6	149691007	149691007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaacaatattccttctataAtcagttctcattaaaatttt	1	8	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149691007	G	G	149691007	1	3	18	0	1	0	0	0	0	0	0	0	15615	116	4	5		5	TAB2	6	149691007	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	21556614	149691007	21424060	234	35757											
LPA	4018	broad.mit.edu	37	chr6	161022177	161022177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaaaatgggtacatatgCaggaacactgtatattttgc	8	6	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161022177	A	A	161022177	1	1	18	0	1	0	0	0	0	0	0	0	8990	725	25	3		3	LPA	6	161022177	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	11331170	161022177	10092890	235	35758											
KIF25	3834	broad.mit.edu	37	chr6	168443498	168443498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgagggccacccatgcaccCcctgcacctcctgtgtcctc	8	20	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168443498	A	A	168443498	1	1	18	0	1	0	0	0	0	0	0	0	8363	638	22	2		2	KIF25	6	168443498	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	7421321	168443498	2671569	236	35759											
SLC29A4	222962	broad.mit.edu	37	chr7	5327485	5327485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgccttgaggagcccaGcgtggcaggcacaccagacc	13	16	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5327485	T	T	5327485	3	4	18	1	0	0	0	0	1	0	0	0	14651	971	34	3	40	3	SLC29A4	7	5327485	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08		5327485	153811178	237	35760											
RNF216	54476	broad.mit.edu	37	chr7	5800722	5800722	+	Translation_Start_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaatgcagacatgcataTatgggactgctaatatctaa	7	7	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5800722	C	C	5800722	1	2	18	1	0	0	0	0	0	0	0	0	13591	1421	49	5		5	RNF216	7	5800722	Translation_Start_Site	SNP	T	TCGA-05-4418-01A-01D-1265-08	473237	5800722	153337941	238	35761											
DNAH11	8701	broad.mit.edu	37	chr7	21904422	21904422	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtataatgtgatgttatTaatctttgtattattcaatt	5	3	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21904422	C	C	21904422	1	2	18	0	1	0	0	0	0	0	0	0	4639	1769	61	5		5	DNAH11	7	21904422	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	16103700	21904422	137234241	239	35762											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26236821	26236821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtccagaaacccaacaCacctttaataagagaaaaaa	5	9	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26236821	A	A	26236821	1	1	18	0	1	0	0	0	0	0	0	0	7326	493	17	3		3	HNRNPA2B1	7	26236821	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	4332399	26236821	132901842	240	35763											
CBX3	11335	broad.mit.edu	37	chr7	26248069	26248069	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccagaattgattgaagCgtttcttaactctcagaaag	8	7	2	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26248069	T	T	26248069	3	4	18	1	0	0	0	0	1	0	0	0	2745	768	27	4	234	4	CBX3	7	26248069	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	11248	26248069	132890594	241	35764											
INHBA	3624	broad.mit.edu	37	chr7	41730009	41730009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgctgctggaagaggcGgatggtgactttggtcctgg	16	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41730009	T	T	41730009	3	4	18	1	0	0	0	0	1	0	0	0	7811	1116	39	1	764	1	INHBA	7	41730009	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	15481940	41730009	117408654	242	35765											
PKD1L1	168507	broad.mit.edu	37	chr7	47853651	47853651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaggactgggtgtgctGtggacttcaaacctcctcat	12	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47853651	T	T	47853651	1	4	18	0	1	0	0	0	0	0	0	0	12059	1392	48	3		3	PKD1L1	7	47853651	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	6123642	47853651	111285012	243	35766											
EGFR	1956	broad.mit.edu	37	chr7	55218947	55218947	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcgtcatcagtttctcatCatttcactgagatatgcatc	8	10	5	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55218947	T	T	55218947	1	4	18	0	1	0	0	0	0	0	0	0	5007	841	29	4		4	EGFR	7	55218947	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	7365296	55218947	103919716	244	35767											
ZNF713	349075	broad.mit.edu	37	chr7	55980293	55980293	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttaaatttaaccttcgtGtcatatattaacaagatgct	5	6	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55980293	A	A	55980293	1	1	18	0	1	0	0	0	0	0	0	0	18245	1392	48	4		4	ZNF713	7	55980293	5'Flank	SNP	G	TCGA-05-4418-01A-01D-1265-08	761346	55980293	103158370	245	35768											
ZNF479	90827	broad.mit.edu	37	chr7	57188666	57188666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgaaatattttgttttgGgtagttgacaaacattggtt	10	3	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188666	T	T	57188666	2	4	18	1	0	0	0	0	0	0	0	1	18060	1219	43	2		2	ZNF479	7	57188666	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	1208373	57188666	101949997	246	35769											
ZNF716	441234	broad.mit.edu	37	chr7	57529433	57529433	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttaactgctcctcaacCcttaagaaacataagataat	4	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57529433	A	A	57529433	2	1	18	1	0	0	0	0	0	0	0	1	18247	610	22	2		2	ZNF716	7	57529433	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	340767	57529433	101609230	247	35770											
SEMA3A	10371	broad.mit.edu	37	chr7	83610721	83610721	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcaacactcagcacacGctttcccgtaaatatcacac	6	15	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83610721	C	C	83610721	3	2	18	1	0	0	0	0	1	0	0	0	14137	1087	38	4	763	4	SEMA3A	7	83610721	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	26081288	83610721	75527942	248	35771											
DBF4	10926	broad.mit.edu	37	chr7	87514240	87514240	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagcctggataacacagtgAgaccgtgtttcttaaaacaa	8	9	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87514240	G	G	87514240	1	3	18	0	1	0	0	0	0	0	0	0	4281	319	11	5		5	DBF4	7	87514240	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	3903519	87514240	71624423	249	35772											
COL1A2	1278	broad.mit.edu	37	chr7	94027025	94027025	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccatgaagtgatactaatAattgtttcctactttttctt	4	7	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94027025	G	G	94027025	1	3	18	0	1	0	0	0	0	0	0	0	3710	377	13	5		5	COL1A2	7	94027025	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	6512785	94027025	65111638	250	35773											
NPTX2	4885	broad.mit.edu	37	chr7	98245928	98245928	+	5'Flank	DEL	C	-	-													cgcctggtcctggtcccggtCcccgaggcccccgggattct							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98245928	-	-	98245928	6	5	18	0	1	1	0	1	0	0	0	0	10698	870	30	0		0	NPTX2	7	98245928	5'Flank	DEL	C	TCGA-05-4418-01A-01D-1265-08	4218903	98245928	60892735	251	35774											
MYL10	93408	broad.mit.edu	37	chr7	101267507	101267507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaagacgttggagctgGcggtgccttctgctcttttc	14	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101267507	T	T	101267507	3	4	18	1	0	0	0	0	1	0	0	0	10138	1203	42	3	592	3	MYL10	7	101267507	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3021579	101267507	57871156	252	35775											
SH2B2	10603	broad.mit.edu	37	chr7	101957935	101957935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcatggtgaccccggtcCtgaggctgtgccctggaagc	16	12	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101957935	A	A	101957935	1	1	18	0	1	0	0	0	0	0	0	0	14341	696	24	2		2	SH2B2	7	101957935	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	690428	101957935	57180728	253	35776											
NAMPT	10135	broad.mit.edu	37	chr7	105903983	105903983	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catagctatcgctgaccacaGatacaggcactgatgaaaac	8	11	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105903983	T	T	105903983	3	4	18	1	0	0	0	0	1	0	0	0	10243	942	33	3	671	3	NAMPT	7	105903983	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3946048	105903983	53234680	254	35777											
SLC26A3	1811	broad.mit.edu	37	chr7	107427603	107427603	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctctgcactatccttgtctCacgtggaaaaaattaactca	5	11	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107427603	T	T	107427603	1	4	18	0	1	0	0	0	0	0	0	0	14632	841	29	4		4	SLC26A3	7	107427603	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1523620	107427603	51711060	255	35778											
MET	4233	broad.mit.edu	37	chr7	116403424	116403424	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggccattgtatcttataCaacaccagcaaatatataaa	4	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116403424	G	G	116403424	1	3	18	0	1	0	0	0	0	0	0	0	9578	493	17	4		4	MET	7	116403424	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	8975821	116403424	42735239	256	35779											
CTTNBP2	83992	broad.mit.edu	37	chr7	117417645	117417645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaggtctgcaggaacaaCaggcttggatatgccttcag	12	8	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117417645	A	A	117417645	3	1	18	1	0	0	0	0	1	0	0	0	4079	478	17	3	2357	3	CTTNBP2	7	117417645	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1014221	117417645	41721018	257	35780											
SND1	27044	broad.mit.edu	37	chr7	127638065	127638065	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaagggatctatgacccaaGtctctccccactagcttgta	7	13	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127638065	C	C	127638065	1	2	18	0	1	0	0	0	0	0	0	0	14958	1044	36	4		4	SND1	7	127638065	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	10220420	127638065	31500598	258	35781											
SMO	6608	broad.mit.edu	37	chr7	128844948	128844948	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtcctggaagtgtatctCcagccaccctgccatgctac	9	15	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128844948	A	A	128844948	1	1	18	0	1	0	0	0	0	0	0	0	14914	870	30	3		3	SMO	7	128844948	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1206883	128844948	30293715	259	35782											
PODXL	5420	broad.mit.edu	37	chr7	131195485	131195485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgatccacctgtctcggCctcccaaagtgctgggatta	11	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131195485	A	A	131195485	1	1	18	0	1	0	0	0	0	0	0	0	12275	754	26	3		3	PODXL	7	131195485	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2350537	131195485	27943178	260	35783											
PDIA4	9601	broad.mit.edu	37	chr7	148709033	148709033	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaggaactcctggaccTgcttcagggtcagaatctcc	9	14	4	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148709033	A	A	148709033	3	1	18	1	0	0	0	0	1	0	0	0	11764	1580	55	5	1073	5	PDIA4	7	148709033	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	17513548	148709033	10429630	261	35784											
SSPO	23145	broad.mit.edu	37	chr7	149522402	149522402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagacactgtattcaccctgGactgtgccaaccagtgccca	8	14	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149522402	T	T	149522402	3	4	18	1	0	0	0	0	1	0	0	0	15307	1174	41	3	14414	3	SSPO	7	149522402	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	813369	149522402	9616261	262	35785											
DPP6	1804	broad.mit.edu	37	chr7	154172027	154172027	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttatttttttctagcggAagataatagtctgtctcaaa	6	5	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154172027	C	C	154172027	3	2	18	1	0	0	0	0	1	0	0	0	4770	246	9	5	488	5	DPP6	7	154172027	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	4649625	154172027	4966636	263	35786											
LMBR1	64327	broad.mit.edu	37	chr7	156518480	156518480	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcaaaatgatttcaagcgCagctcccacaaaaccaaacg	5	12	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156518480	G	G	156518480	3	3	18	1	0	0	0	0	1	0	0	0	8914	710	25	4	447	4	LMBR1	7	156518480	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2346453	156518480	2620183	264	35787											
CSMD1	64478	broad.mit.edu	37	chr8	3889486	3889486	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgggctgacgatgcagGtcaggatggcgtggccttcc	15	11	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3889486	A	A	3889486	3	1	18	1	0	0	0	0	1	0	0	0	3978	1261	44	4	10224	4	CSMD1	8	3889486	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08		3889486	142474536	265	35788											
DLC1	10395	broad.mit.edu	37	chr8	12944032	12944032	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atagaagccaagtttaaaatCgtgcttcactcttcactatt	5	9	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12944032	A	A	12944032	1	1	18	0	1	0	0	0	0	0	0	0	4590	899	31	3		3	DLC1	8	12944032	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	9054546	12944032	133419990	266	35789											
WRN	7486	broad.mit.edu	37	chr8	30999102	30999102	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaaatttatgaagatttgcGcccttacgaaaaaggtaaac	7	7	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30999102	C	C	30999102	3	2	18	1	0	0	0	0	1	0	0	0	17529	1087	38	4	3218	4	WRN	8	30999102	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	18055070	30999102	115364920	267	35790											
ANK1	286	broad.mit.edu	37	chr8	41554022	41554022	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgctgcgcacgtccgtGgcgggatcaccactcgcagg	16	14	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41554022	T	T	41554022	3	4	18	1	0	0	0	0	1	0	0	0	620	1348	47	2	3220	2	ANK1	8	41554022	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	10554920	41554022	104810000	268	35791											
HOOK3	84376	broad.mit.edu	37	chr8	42814476	42814476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaagagatttgttctgtGcaccacctctttgaaacata	8	8	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42814476	T	T	42814476	1	4	18	0	1	0	0	0	0	0	0	0	7351	1334	46	3		3	HOOK3	8	42814476	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1260454	42814476	103549546	269	35792											
ST18	9705	broad.mit.edu	37	chr8	53079434	53079434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggggaacccgcactttGtgggggcaccccgaaaggct	14	13	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53079434	T	T	53079434	3	4	18	1	0	0	0	0	1	0	0	0	15330	1368	48	3	2025	3	ST18	8	53079434	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	10264958	53079434	93284588	270	35793											
PREX2	80243	broad.mit.edu	37	chr8	68989772	68989772	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttcttaggatactgcaacAcccagtgctgcagtgaggtc	12	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68989772	T	T	68989772	1	4	18	0	1	0	0	0	0	0	0	0	12583	174	6	5		5	PREX2	8	68989772	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	15910338	68989772	77374250	271	35794											
PRDM14	63978	broad.mit.edu	37	chr8	70982089	70982089	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcctcacttggccggggtaGagccatcccgggaccgcacg	15	15	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70982089	T	T	70982089	3	4	18	1	0	0	0	0	1	0	0	0	12561	933	33	3	1736	3	PRDM14	8	70982089	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	1992317	70982089	75381933	272	35795											
NECAB1	64168	broad.mit.edu	37	chr8	91937918	91937918	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttgtttttatttgtcaaAgtctatttatcttgcgtttt	5	5	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91937918	T	T	91937918	1	4	18	0	1	0	0	0	0	0	0	0	10399	87	3	5		5	NECAB1	8	91937918	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	20955829	91937918	54426104	273	35796											
CDH17	1015	broad.mit.edu	37	chr8	95158483	95158483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctttaaaattcaaggaGttaggtacactgagatgcta	8	6	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95158483	T	T	95158483	1	4	18	0	1	0	0	0	0	0	0	0	3132	1044	36	3		3	CDH17	8	95158483	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	3220565	95158483	51205539	274	35797											
VPS13B	157680	broad.mit.edu	37	chr8	100454673	100454673	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattccaaatgatagcctGccttccccaagtacaattgt	5	11	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100454673	T	T	100454673	2	4	18	1	0	0	0	0	0	0	0	1	17317	1306	46	3		3	VPS13B	8	100454673	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	5296190	100454673	45909349	275	35798											
FBXO43	286151	broad.mit.edu	37	chr8	101146709	101146709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgccatccgaattctctcCctaggctgttccttttcaga	6	13	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101146709	A	A	101146709	1	1	18	0	1	0	0	0	0	0	0	0	5809	638	22	2		2	FBXO43	8	101146709	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	692036	101146709	45217313	276	35799											
RSPO2	340419	broad.mit.edu	37	chr8	108995218	108995218	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttggctccctcagcgcctaCgactggctcctggggtgcag	14	14	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108995218	G	G	108995218	1	3	18	0	1	0	0	0	0	0	0	0	13821	551	19	4		4	RSPO2	8	108995218	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	7848509	108995218	37368804	277	35800											
PKHD1L1	93035	broad.mit.edu	37	chr8	110424452	110424452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttgggggaaaaccagaaCaataaatcatgttttcattt	8	6	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110424452	A	A	110424452	1	1	18	0	1	0	0	0	0	0	0	0	12067	493	17	3		3	PKHD1L1	8	110424452	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1429234	110424452	35939570	278	35801											
CSMD3	114788	broad.mit.edu	37	chr8	113240885	113240885	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacacagacatttcaacaacTcagaagaaaatttgaaatta	4	8	2	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113240885	A	A	113240885	1	1	18	0	1	0	0	0	0	0	0	0	3980	1566	54	5		5	CSMD3	8	113240885	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	2816433	113240885	33123137	279	35802											
CSMD3	114788	broad.mit.edu	37	chr8	113529134	113529134	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attttgtacattctgcggagGttaataatcctctgaaatct	7	7	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113529134	C	C	113529134	1	2	18	0	1	0	0	0	0	0	0	0	3980	1276	44	4		4	CSMD3	8	113529134	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	288249	113529134	32834888	280	35803											
COL14A1	7373	broad.mit.edu	37	chr8	121208961	121208961	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactaagttgtctaaaagacAttaagatggactgtttttga	8	5	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121208961	T	T	121208961	1	4	18	0	1	0	0	0	0	0	0	0	3703	232	8	5		5	COL14A1	8	121208961	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	7679827	121208961	25155061	281	35804											
TG	7038	broad.mit.edu	37	chr8	134144265	134144265	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcaagcagaacgcaaaggCccaatttgcatcgatagact	8	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134144265	T	T	134144265	1	4	18	0	1	0	0	0	0	0	0	0	15936	754	26	4		4	TG	8	134144265	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	12935304	134144265	12219757	282	35805											
FAM135B	51059	broad.mit.edu	37	chr8	139164306	139164306	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatcctggggaaccttggctCttgctgtgcatatctgaagg	13	9	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139164306	G	G	139164306	3	3	18	1	0	0	0	0	1	0	0	0	5495	912	32	4	1840	4	FAM135B	8	139164306	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	5020041	139164306	7199716	283	35806											
COL22A1	169044	broad.mit.edu	37	chr8	139890410	139890410	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggccggtcgctgtagcGcacgacccccacacgggtgc	16	15	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139890410	A	A	139890410	3	1	18	1	0	0	0	0	1	0	0	0	3713	1087	38	4	4891	4	COL22A1	8	139890410	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	726104	139890410	6473612	284	35807											
TRAPPC9	83696	broad.mit.edu	37	chr8	140922242	140922242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagaggttaaggaaatgcCaagcctttggtccacatctc	9	9	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140922242	A	A	140922242	1	1	18	0	1	0	0	0	0	0	0	0	16589	609	21	2		2	TRAPPC9	8	140922242	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1031832	140922242	5441780	285	35808											
GPIHBP1	338328	broad.mit.edu	37	chr8	144297309	144297309	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagggggcaggcggcccCcggggcagctccgaaactgt	18	13	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144297309	T	T	144297309	2	4	18	1	0	0	0	0	0	0	0	1	6677	610	22	4		4	GPIHBP1	8	144297309	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	3375067	144297309	2066713	286	35809											
PLIN2	123	broad.mit.edu	37	chr9	19126429	19126429	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcaacggatgccatttttCttcctggagaaagaaatctg	9	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19126429	A	A	19126429	1	1	18	0	1	0	0	0	0	0	0	0	12185	928	32	3		3	PLIN2	9	19126429	5'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08		19126429	122087002	287	35810											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69420407	69420407	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcaatttcccaagaagCtgaaggaagagcatgatagg	11	8	1	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69420407	T	T	69420407	2	4	18	1	0	0	0	0	0	0	0	1	650	796	28	4		4	ANKRD20A4	9	69420407	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	50293978	69420407	71793024	288	35811											
PIP5K1B	8395	broad.mit.edu	37	chr9	71404253	71404253	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccaagcgtctcttctgatGccgcataaatcacaatcaca	6	13	4	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71404253	A	A	71404253	1	1	18	0	1	0	0	0	0	0	0	0	12035	1334	46	4		4	PIP5K1B	9	71404253	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1983846	71404253	69809178	289	35812											
C9orf79	286234	broad.mit.edu	37	chr9	90498132	90498132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtaaggagtcctcagcCcagccccacagagaaagatt	12	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90498132	A	A	90498132	1	1	18	0	1	0	0	0	0	0	0	0	2523	638	22	2		2	C9orf79	9	90498132	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	19093879	90498132	50715299	290	35813											
AUH	549	broad.mit.edu	37	chr9	94060310	94060310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccagttcaagaccaccaCctaaagcgagtccatctatt	6	13	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94060310	A	A	94060310	3	1	18	1	0	0	0	0	1	0	0	0	1224	507	18	3	489	3	AUH	9	94060310	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3562178	94060310	47153121	291	35814											
PTPDC1	138639	broad.mit.edu	37	chr9	96860223	96860223	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagagggccgagaacctcCtggagcaaggggagactcca	14	10	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96860223	T	T	96860223	2	4	18	1	0	0	0	0	0	0	0	1	12879	680	24	4		4	PTPDC1	9	96860223	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	2799913	96860223	44353208	292	35815											
OR1J1	347168	broad.mit.edu	37	chr9	125239348	125239348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagactgtaaatgaatggGttcaacatgggagtgactgc	12	7	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125239348	T	T	125239348	3	4	18	1	0	0	0	0	1	0	0	0	11053	1252	44	3	113	3	OR1J1	9	125239348	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	28379125	125239348	15974083	293	35816											
FAM73B	84895	broad.mit.edu	37	chr9	131830407	131830407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccagcttcagtctcccCatctggaaagtggccccgag	10	16	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131830407	A	A	131830407	1	1	18	0	1	0	0	0	0	0	0	0	5669	609	21	2		2	FAM73B	9	131830407	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	6591059	131830407	9383024	294	35817											
COL5A1	1289	broad.mit.edu	37	chr9	137704349	137704349	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggagacgtgggccagatgGtaagtgtgcctgagactcca	15	9	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137704349	C	C	137704349	5	2	18	1	0	0	0	0	0	0	1	0	3728	1275	44	4	3931	4	COL5A1	9	137704349	Splice_Site	SNP	G	TCGA-05-4418-01A-01D-1265-08	5873942	137704349	3509082	295	35818											
FBXO18	84893	broad.mit.edu	37	chr10	5955655	5955655	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatctgaggaaaaataagAtgcagattgtgacttgaatt	9	5	1	5			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5955655	G	G	5955655	1	3	18	0	1	0	0	0	0	0	0	0	5788	348	12	5		5	FBXO18	10	5955655	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08		5955655	129579092	296	35819											
CAMK1D	57118	broad.mit.edu	37	chr10	12833076	12833076	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactcactgaaagttcaggCcaaatagcagaccccaaaaa	6	11	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12833076	A	A	12833076	1	1	18	0	1	0	0	0	0	0	0	0	2623	754	26	3		3	CAMK1D	10	12833076	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	6877421	12833076	122701671	297	35820											
NMT2	9397	broad.mit.edu	37	chr10	15174810	15174810	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcatggacgagcttaaacAtgtacctgtcataaatccga	8	11	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15174810	G	G	15174810	1	3	18	0	1	0	0	0	0	0	0	0	10599	232	8	5		5	NMT2	10	15174810	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	2341734	15174810	120359937	298	35821											
FAM171A1	221061	broad.mit.edu	37	chr10	15326063	15326063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgcatctgctacgggctGgtgggtgctggcgtcgctga	18	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15326063	T	T	15326063	3	4	18	1	0	0	0	0	1	0	0	0	5535	1357	47	2	2561	2	FAM171A1	10	15326063	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	151253	15326063	120208684	299	35822											
ITGA8	8516	broad.mit.edu	37	chr10	15573137	15573137	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggatgcaagagcatagGgatcattttttctctgaaag	11	7	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15573137	A	A	15573137	3	1	18	1	0	0	0	0	1	0	0	0	7952	1232	43	4	309	4	ITGA8	10	15573137	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	247074	15573137	119961610	300	35823											
GPR158	57512	broad.mit.edu	37	chr10	25886829	25886829	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttccatcatgagacgcatTacggagatcccagagacagt	10	11	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25886829	C	C	25886829	2	2	18	1	0	0	0	0	0	0	0	1	6728	1742	61	5		5	GPR158	10	25886829	Silent	SNP	T	TCGA-05-4418-01A-01D-1265-08	10313692	25886829	109647918	301	35824											
PARD3	56288	broad.mit.edu	37	chr10	34663999	34663999	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacacacacacacacaCacacacacacacacacacac	0	19	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34663999	G	G	34663999	1	3	18	0	1	0	0	0	0	0	0	0	11537	493	17	4		4	PARD3	10	34663999	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	8777170	34663999	100870748	302	35825											
ZNF248	57209	broad.mit.edu	37	chr10	38120804	38120804	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttccacattcattacaTataaacggtttctcccctgt	4	11	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38120804	C	C	38120804	3	2	18	1	0	0	0	0	1	0	0	0	17919	1396	49	5	264	5	ZNF248	10	38120804	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	3456805	38120804	97413943	303	35826											
MARCH8	220972	broad.mit.edu	37	chr10	45956584	45956584	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccagctttttaaggaaatGaacgcaggcaagccatgacc	9	12	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45956584	A	A	45956584	1	1	18	0	1	0	0	0	0	0	0	0	9399	1305	45	4		4	MARCH8	10	45956584	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	7835780	45956584	89578163	304	35827											
SLC18A3	6572	broad.mit.edu	37	chr10	50818982	50818983	+	Missense_Mutation	DNP	GG	TT	TT													actacatcgcccacatgcgcGggggcggcgagggccccacc							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50818983	TT	TT	50818982	3	4	18	1	0	0	0	0	1	0	0	0	14540	1116	39	1	198	1	SLC18A3	10	50818982	Missense_Mutation	DNP	GG	TCGA-05-4418-01A-01D-1265-08	4862398	50818982	84715765	305	35828											
DDX50	79009	broad.mit.edu	37	chr10	70666761	70666761	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagtgataataaactagagGaggtatggaagctttttatt	10	3	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70666761	T	T	70666761	4	4	18	1	0	0	0	0	0	1	0	0	4401	1175	41	3	388	3	DDX50	10	70666761	Nonsense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	19847779	70666761	64867986	306	35829											
PRF1	5551	broad.mit.edu	37	chr10	72360447	72360447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcacagagggtgcaggtgCcgtcgggccgcaggaacctt	15	11	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72360447	A	A	72360447	3	1	18	1	0	0	0	0	1	0	0	0	12584	739	26	3	1463	3	PRF1	10	72360447	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1693686	72360447	63174300	307	35830											
CDHR1	92211	broad.mit.edu	37	chr10	85961589	85961589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccccatttgccgtggaCcgccacagcggtgtgctgcg	12	16	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85961589	A	A	85961589	3	1	18	1	0	0	0	0	1	0	0	0	3148	506	18	3	578	3	CDHR1	10	85961589	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	13601142	85961589	49573158	308	35831											
KIF20B	9585	broad.mit.edu	37	chr10	91483930	91483930	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttagtttttttttttacTtagtttactttttatattag	3	2	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91483930	G	G	91483930	1	3	18	0	1	0	0	0	0	0	0	0	8357	1624	56	5		5	KIF20B	10	91483930	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	5522341	91483930	44050817	309	35832											
BTAF1	9044	broad.mit.edu	37	chr10	93695424	93695424	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttatttcaggctagatcgcCtttttattttactggatact	7	7	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93695424	T	T	93695424	3	4	18	1	0	0	0	0	1	0	0	0	1545	681	24	4	31	4	BTAF1	10	93695424	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2211494	93695424	41839323	310	35833											
PKD2L1	9033	broad.mit.edu	37	chr10	102056094	102056094	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcagagaaggcaaggggatCtcaagggaagttccaagatg	15	6	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102056094	A	A	102056094	1	1	18	0	1	0	0	0	0	0	0	0	12062	928	32	3		3	PKD2L1	10	102056094	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	8360670	102056094	33478653	311	35834											
SORCS1	114815	broad.mit.edu	37	chr10	108371774	108371774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggacaagcgaagagaccgGaattcctctggggatataac	12	8	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108371774	T	T	108371774	3	4	18	1	0	0	0	0	1	0	0	0	15044	1165	41	3	832	3	SORCS1	10	108371774	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	6315680	108371774	27162973	312	35835											
NRAP	4892	broad.mit.edu	37	chr10	115357650	115357650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcctttgggttctccaCtccataaacagattccctct	7	13	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115357650	A	A	115357650	1	1	18	0	1	0	0	0	0	0	0	0	10733	580	20	3		3	NRAP	10	115357650	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	6985876	115357650	20177097	313	35836											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118355764	118355764	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttccaaagttcacctcatTggccacagcctgggagccca	8	16	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118355764	A	A	118355764	2	1	18	1	0	0	0	0	0	0	0	1	12245	1800	63	5		5	PNLIPRP1	10	118355764	Silent	SNP	T	TCGA-05-4418-01A-01D-1265-08	2998114	118355764	17178983	314	35837											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118380436	118380436	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaggataaagcctggttAtaaaaggccacagccaacct	8	11	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118380436	T	T	118380436	1	4	18	0	1	0	0	0	0	0	0	0	12246	464	16	5		5	PNLIPRP2	10	118380436	5'Flank	SNP	A	TCGA-05-4418-01A-01D-1265-08	24672	118380436	17154311	315	35838											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118380792	118380792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgcgcatgggtctgtGtgtgtctgtgtttccatcca	12	10	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118380792	T	T	118380792	1	4	18	0	1	0	0	0	0	0	0	0	12246	1392	48	3		3	PNLIPRP2	10	118380792	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	356	118380792	17153955	316	35839											
HSPA12A	259217	broad.mit.edu	37	chr10	118460383	118460383	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgggaggacatcccttccCcaccccaaggctggaggaag	13	13	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118460383	G	G	118460383	1	3	18	0	1	0	0	0	0	0	0	0	7473	638	22	4		4	HSPA12A	10	118460383	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	79591	118460383	17074364	317	35840											
LRRC27	80313	broad.mit.edu	37	chr10	134188652	134188652	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgacgggcggccctcactgGaaacctttcgcttggcctgc	12	15	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134188652	A	A	134188652	3	1	18	1	0	0	0	0	1	0	0	0	9068	1174	41	4	1719	4	LRRC27	10	134188652	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	15728269	134188652	1346095	318	35841											
KNDC1	85442	broad.mit.edu	37	chr10	135011939	135011939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccacccagctgcctgcaGcgttcacctccgaggccacg	10	18	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135011939	T	T	135011939	3	4	18	1	0	0	0	0	1	0	0	0	8497	971	34	3	2055	3	KNDC1	10	135011939	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	823287	135011939	522808	319	35842											
FRG2B	441581	broad.mit.edu	37	chr10	135438905	135438905	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcctctgacatagctcgcaCagaggtcaccaagctttttc	8	13	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135438905	G	G	135438905	3	3	18	1	0	0	0	0	1	0	0	0	6107	478	17	4	304	4	FRG2B	10	135438905	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	426966	135438905	95842	320	35843											
MUC2	4583	broad.mit.edu	37	chr11	1080962	1080962	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgaagacggtggtgcTgctggctgacaagaagaaga	15	8	0	6			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1080962	A	A	1080962	3	1	18	1	0	0	0	0	1	0	0	0	10069	1580	55	5	1384	5	MUC2	11	1080962	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08		1080962	133925554	321	35844											
PGAP2	27315	broad.mit.edu	37	chr11	3845193	3845193	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggcgtttctgcatcggCctgcactcggcgcctcgctt	13	14	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3845193	T	T	3845193	2	4	18	1	0	0	0	0	0	0	0	1	11873	739	26	4		4	PGAP2	11	3845193	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	2764231	3845193	131161323	322	35845											
OR51D1	390038	broad.mit.edu	37	chr11	4661687	4661687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctctcagtcatgggtgtgGactctctcttcattggcttc	9	12	5	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4661687	T	T	4661687	3	4	18	1	0	0	0	0	1	0	0	0	11187	1174	41	3	669	3	OR51D1	11	4661687	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	816494	4661687	130344829	323	35846											
PRKCDBP	112464	broad.mit.edu	37	chr11	6340270	6340270	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgggcttaaggaagggaGggccagagcgcccgccttgg	18	10	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6340270	A	A	6340270	1	1	18	0	1	0	0	0	0	0	0	0	12616	1015	35	4		4	PRKCDBP	11	6340270	3'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	1678583	6340270	128666246	324	35847											
ARFIP2	23647	broad.mit.edu	37	chr11	6500372	6500372	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggtgcttaaatcctacctTataggtgttgatgccccatt	9	9	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6500372	A	A	6500372	4	1	18	1	0	0	0	0	0	1	0	0	857	1763	61	5	732	5	ARFIP2	11	6500372	Nonsense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	160102	6500372	128506144	325	35848											
TPP1	1200	broad.mit.edu	37	chr11	6636248	6636248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgaaggtgcaagtagaGgtcaggggttctgagtgatt	17	3	2	5			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6636248	A	A	6636248	1	1	18	0	1	0	0	0	0	0	0	0	16535	1015	35	4		4	TPP1	11	6636248	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	135876	6636248	128370268	326	35849											
OR10A3	26496	broad.mit.edu	37	chr11	7960643	7960643	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagaatattactaatttcAtaaaaacccctctgttcata	3	8	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7960643	G	G	7960643	3	3	18	1	0	0	0	0	1	0	0	0	10985	217	8	5	522	5	OR10A3	11	7960643	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	1324395	7960643	127045873	327	35850											
RIC3	79608	broad.mit.edu	37	chr11	8161742	8161742	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatcggcccaattttccTgagaaaataataatcacttt	6	8	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8161742	A	A	8161742	5	1	18	1	0	0	0	0	0	0	1	0	13463	1594	55	5	1003	5	RIC3	11	8161742	Splice_Site	SNP	T	TCGA-05-4418-01A-01D-1265-08	201099	8161742	126844774	328	35851											
MICAL2	9645	broad.mit.edu	37	chr11	12229372	12229372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctacagaatgagaataaTaacgattccaaagggccact	7	9	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12229372	C	C	12229372	1	2	18	0	1	0	0	0	0	0	0	0	9663	1421	49	5		5	MICAL2	11	12229372	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	4067630	12229372	122777144	329	35852											
PARVA	55742	broad.mit.edu	37	chr11	12549675	12549675	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacccatccctcccaggcgcTggggaccaacctagcaatga	10	16	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12549675	C	C	12549675	1	2	18	0	1	0	0	0	0	0	0	0	11562	1595	55	5		5	PARVA	11	12549675	3'UTR	SNP	T	TCGA-05-4418-01A-01D-1265-08	320303	12549675	122456841	330	35853											
FAR1	84188	broad.mit.edu	37	chr11	13733229	13733229	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagctaccaagtatatattTggggttgtagagttcaaata	9	5	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13733229	C	C	13733229	1	2	18	0	1	0	0	0	0	0	0	0	5731	1827	63	5		5	FAR1	11	13733229	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	1183554	13733229	121273287	331	35854											
TPH1	7166	broad.mit.edu	37	chr11	18047062	18047062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaatatgtacttttaaaCtacacagatactcatacacc	3	10	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18047062	A	A	18047062	1	1	18	0	1	0	0	0	0	0	0	0	16525	580	20	3		3	TPH1	11	18047062	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	4313833	18047062	116959454	332	35855											
KIF18A	81930	broad.mit.edu	37	chr11	28106288	28106288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcattatagtttgacagtttCctccaagagaatcctttaac	5	9	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28106288	A	A	28106288	3	1	18	1	0	0	0	0	1	0	0	0	8350	855	30	3	1775	3	KIF18A	11	28106288	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	10059226	28106288	106900228	333	35856											
ELP4	26610	broad.mit.edu	37	chr11	31669325	31669325	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccgtgtcacaaccttgtcaGatgtagtagttggtctggaa	11	9	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31669325	T	T	31669325	3	4	18	1	0	0	0	0	1	0	0	0	5124	942	33	3	994	3	ELP4	11	31669325	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3563037	31669325	103337191	334	35857											
CSTF3	1479	broad.mit.edu	37	chr11	33112197	33112197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttgaatgctgtaaaccGtcttttctccactttgagta	6	9	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33112197	T	T	33112197	2	4	18	1	0	0	0	0	0	0	0	1	4020	1144	40	3		3	CSTF3	11	33112197	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	1442872	33112197	101894319	335	35858											
OR5I1	10798	broad.mit.edu	37	chr11	55703060	55703060	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaacactgagataattttatCagtgtttggagaatacaggt	10	4	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55703060	T	T	55703060	3	4	18	1	0	0	0	0	1	0	0	0	11258	826	29	4	130	4	OR5I1	11	55703060	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	22590863	55703060	79303456	336	35859											
OR8J3	81168	broad.mit.edu	37	chr11	55904471	55904471	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgctatcatatgcgaagCgcaggtggaaaaggcttttt	12	7	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904471	T	T	55904471	3	4	18	1	0	0	0	0	1	0	0	0	11336	768	27	4	225	4	OR8J3	11	55904471	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	201411	55904471	79102045	337	35860											
MS4A2	2206	broad.mit.edu	37	chr11	59857910	59857910	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagacattttttcatcattTaaagcaggttatccattctg	7	7	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59857910	G	G	59857910	3	3	18	1	0	0	0	0	1	0	0	0	9954	1751	61	5	298	5	MS4A2	11	59857910	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	3953439	59857910	75148606	338	35861											
STIP1	10963	broad.mit.edu	37	chr11	63964764	63964764	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgaaagaaaaagagctgGggaacgatgcctacaagaag	12	7	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63964764	A	A	63964764	3	1	18	1	0	0	0	0	1	0	0	0	15403	1232	43	4	716	4	STIP1	11	63964764	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	4106854	63964764	71041752	339	35862											
NRXN2	9379	broad.mit.edu	37	chr11	64402833	64402833	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgctgaagcccacggcCaggcgatccatcctcgtgct	13	14	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64402833	A	A	64402833	2	1	18	1	0	0	0	0	0	0	0	1	10761	581	21	2		2	NRXN2	11	64402833	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	438069	64402833	70603683	340	35863											
ZNHIT2	741	broad.mit.edu	37	chr11	64884413	64884413	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagtgtggcacagaagtcaGagagcagcgcgtcgtcaccg	15	11	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64884413	A	A	64884413	3	1	18	1	0	0	0	0	1	0	0	0	18336	942	33	4	502	4	ZNHIT2	11	64884413	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	481580	64884413	70122103	341	35864											
GAL	51083	broad.mit.edu	37	chr11	68455487	68455487	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatctgcaaacagatgccGttggcaaccacaggtcattc	9	12	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68455487	A	A	68455487	3	1	18	1	0	0	0	0	1	0	0	0	6258	1145	40	4	152	4	GAL	11	68455487	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3571074	68455487	66551029	342	35865											
PPFIA1	8500	broad.mit.edu	37	chr11	70221071	70221071	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattcgctggatcctgtcaAttggccttaaagaatatgca	9	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70221071	C	C	70221071	3	2	18	1	0	0	0	0	1	0	0	0	12405	101	4	5	3277	5	PPFIA1	11	70221071	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	1765584	70221071	64785445	343	35866											
CLPB	81570	broad.mit.edu	37	chr11	72028186	72028186	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggcgctctcctggccaaTgatgtgctcctttagtcgct	11	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72028186	C	C	72028186	3	2	18	1	0	0	0	0	1	0	0	0	3583	1464	51	5	1121	5	CLPB	11	72028186	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	1807115	72028186	62978330	344	35867											
NARS2	79731	broad.mit.edu	37	chr11	78152269	78152269	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaactctttatgaagaagtaGacgacaaagcctctgctctc	8	10	3	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78152269	C	C	78152269	1	2	18	0	1	0	0	0	0	0	0	0	10265	957	33	4		4	NARS2	11	78152269	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	6124083	78152269	56854247	345	35868											
SIK2	23235	broad.mit.edu	37	chr11	111594606	111594606	+	Frame_Shift_Del	DEL	C	-	-													cccagcccccttacagttctCctatcagacttgtgagctgc							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111594606	-	-	111594606	7	5	18	1	0	1	0	1	0	0	0	0	14431	855	30	0	2592	0	SIK2	11	111594606	Frame_Shift_Del	DEL	C	TCGA-05-4418-01A-01D-1265-08	33442337	111594606	23411910	346	35869											
SORL1	6653	broad.mit.edu	37	chr11	121427877	121427877	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtgactagaagttggggCaggtttcgcagatgggtcag	16	5	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121427877	T	T	121427877	1	4	18	0	1	0	0	0	0	0	0	0	15048	725	25	4		4	SORL1	11	121427877	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	9833271	121427877	13578639	347	35870											
ROBO3	64221	broad.mit.edu	37	chr11	124744018	124744018	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatggcgtgcagctggagAcacacacagtcagcggtctg	14	11	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124744018	G	G	124744018	3	3	18	1	0	0	0	0	1	0	0	0	13626	275	10	5	1883	5	ROBO3	11	124744018	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	3316141	124744018	10262498	348	35871											
PATE2	399967	broad.mit.edu	37	chr11	125648242	125648242	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctagcctgatgattttgcCgagtaatgggtaaaagaaag	11	5	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125648242	T	T	125648242	1	4	18	0	1	0	0	0	0	0	0	0	11568	667	23	4		4	PATE2	11	125648242	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	904224	125648242	9358274	349	35872											
ADIPOR2	79602	broad.mit.edu	37	chr12	1881987	1881987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtctctgtccttgactGtttctgtgattgccttgcag	9	12	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1881987	T	T	1881987	1	4	18	0	1	0	0	0	0	0	0	0	319	1392	48	3		3	ADIPOR2	12	1881987	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08		1881987	131969908	350	35873											
PARP11	57097	broad.mit.edu	37	chr12	3949591	3949591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaataaaagccccattagCactacctcctcgactgcagc	6	16	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3949591	A	A	3949591	1	1	18	0	1	0	0	0	0	0	0	0	11550	725	25	3		3	PARP11	12	3949591	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2067604	3949591	129902304	351	35874											
C12orf5	57103	broad.mit.edu	37	chr12	4430600	4430600	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggagggctggcttggaagCgctttttccggggcgcttgc	18	10	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4430600	T	T	4430600	1	4	18	0	1	0	0	0	0	0	0	0	1707	783	27	4		4	C12orf5	12	4430600	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	481009	4430600	129421295	352	35875											
C12orf5	57103	broad.mit.edu	37	chr12	4446419	4446419	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgttcactgcaacctccAtctcccgggttcaagtgatt	7	14	4	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4446419	G	G	4446419	1	3	18	0	1	0	0	0	0	0	0	0	1707	232	8	5		5	C12orf5	12	4446419	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	15819	4446419	129405476	353	35876											
ACSM4	341392	broad.mit.edu	37	chr12	7475174	7475174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgtttagtatatgtggGggcctttctgccccaggttt	11	7	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7475174	T	T	7475174	1	4	18	0	1	0	0	0	0	0	0	0	186	1247	43	2		2	ACSM4	12	7475174	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	3028755	7475174	126376721	354	35877											
CLEC4C	170482	broad.mit.edu	37	chr12	7883263	7883263	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaagcacaacccTtgatgtcaaatagacctagg	6	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7883263	A	A	7883263	1	1	18	0	1	0	0	0	0	0	0	0	3545	1624	56	5		5	CLEC4C	12	7883263	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	408089	7883263	125968632	355	35878											
GRIN2B	2904	broad.mit.edu	37	chr12	13715944	13715944	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcgacgcccccgccaccgTgggctgcctgaagaagtagg	13	14	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13715944	G	G	13715944	3	3	18	1	0	0	0	0	1	0	0	0	6846	1696	59	5	230	5	GRIN2B	12	13715944	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	5832681	13715944	120135951	356	35879											
EPS8	2059	broad.mit.edu	37	chr12	15777398	15777398	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctaatattacatcaccctCtctagaaccccaatctctat	1	16	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15777398	A	A	15777398	1	1	18	0	1	0	0	0	0	0	0	0	5236	928	32	3		3	EPS8	12	15777398	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2061454	15777398	118074497	357	35880											
SLCO1A2	6579	broad.mit.edu	37	chr12	21457403	21457403	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttggcaaaatcttctaTataggaaatacccaaaggca	6	7	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21457403	C	C	21457403	3	2	18	1	0	0	0	0	1	0	0	0	14836	1406	49	5	1505	5	SLCO1A2	12	21457403	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	5680005	21457403	112394492	358	35881											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	18	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3940882	25398285	108453610	359	35882											
ABCD2	225	broad.mit.edu	37	chr12	39998516	39998516	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttaaactttggttctgttGataaatacttaaatatagga	6	4	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39998516	C	C	39998516	1	2	18	0	1	0	0	0	0	0	0	0	61	1305	45	4		4	ABCD2	12	39998516	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	14600231	39998516	93853379	360	35883											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777813	43777813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttgatttgaacaattaGctaataaataccaaattata	4	6	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43777813	T	T	43777813	1	4	18	0	1	0	0	0	0	0	0	0	266	986	34	3		3	ADAMTS20	12	43777813	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	3779297	43777813	90074082	361	35884											
ANO6	196527	broad.mit.edu	37	chr12	45795743	45795743	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcctccatcatcagctttAtaattatcatgattctgaac	5	11	4	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45795743	G	G	45795743	3	3	18	1	0	0	0	0	1	0	0	0	701	449	16	5	1622	5	ANO6	12	45795743	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	2017930	45795743	88056152	362	35885											
C12orf54	121273	broad.mit.edu	37	chr12	48888730	48888730	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctggaccctaactctacaAtcaaggaagaaggacatctc	7	13	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48888730	G	G	48888730	1	3	18	0	1	0	0	0	0	0	0	0	1712	116	4	5		5	C12orf54	12	48888730	3'UTR	SNP	A	TCGA-05-4418-01A-01D-1265-08	3092987	48888730	84963165	363	35886											
SP7	121340	broad.mit.edu	37	chr12	53722173	53722173	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaggcaggtgaacttcttCtcccgggtgtgagtgcgcac	14	11	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53722173	T	T	53722173	2	4	18	1	0	0	0	0	0	0	0	1	15083	912	32	4		4	SP7	12	53722173	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	4833443	53722173	80129722	364	35887											
MAP3K12	7786	broad.mit.edu	37	chr12	53875772	53875772	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgggcagggagctgggttCagggccagggatgacctctg	18	8	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53875772	T	T	53875772	3	4	18	1	0	0	0	0	1	0	0	0	9338	835	29	4	153	4	MAP3K12	12	53875772	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	153599	53875772	79976123	365	35888											
MAP3K12	7786	broad.mit.edu	37	chr12	53876414	53876414	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtgctgggacccagcccGgcttcctccccggcctgagg	13	17	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53876414	T	T	53876414	2	4	18	1	0	0	0	0	0	0	0	1	9338	1115	39	1		1	MAP3K12	12	53876414	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	642	53876414	79975481	366	35889											
HNRNPA1	3178	broad.mit.edu	37	chr12	54674445	54674445	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatcagagctgttccaggGcggagtctaccaatgccgaa	11	12	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54674445	T	T	54674445	1	4	18	0	1	0	0	0	0	0	0	0	7324	1218	42	3		3	HNRNPA1	12	54674445	5'Flank	SNP	G	TCGA-05-4418-01A-01D-1265-08	798031	54674445	79177450	367	35890											
PDE1B	5153	broad.mit.edu	37	chr12	54967536	54967536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggccaggccagagggagGggtgtgtgaactgggggggt	24	5	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54967536	T	T	54967536	1	4	18	0	1	0	0	0	0	0	0	0	11728	1247	43	2		2	PDE1B	12	54967536	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	293091	54967536	78884359	368	35891											
KIF5A	3798	broad.mit.edu	37	chr12	57969064	57969064	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctctcaggtgagtgcCtaagtttgagaaccttcaga	9	10	4	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57969064	T	T	57969064	1	4	18	0	1	0	0	0	0	0	0	0	8375	696	24	4		4	KIF5A	12	57969064	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	3001528	57969064	75882831	369	35892											
PPM1H	57460	broad.mit.edu	37	chr12	63042381	63042381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttcagcacaccccggGcacgcatcaccaggtcctga	9	17	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63042381	T	T	63042381	3	4	18	1	0	0	0	0	1	0	0	0	12442	1203	42	3	115	3	PPM1H	12	63042381	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	5073317	63042381	70809514	370	35893											
GRIP1	23426	broad.mit.edu	37	chr12	66786504	66786504	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacagtctctcctgccatcTgtaacaaatggatggcttca	8	11	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66786504	G	G	66786504	3	3	18	1	0	0	0	0	1	0	0	0	6853	1580	55	5	1196	5	GRIP1	12	66786504	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	3744123	66786504	67065391	371	35894											
LGR5	8549	broad.mit.edu	37	chr12	71978097	71978097	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatggtaaaacacattgcCctgttgctcttcaccaactg	6	12	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71978097	T	T	71978097	2	4	18	1	0	0	0	0	0	0	0	1	8829	610	22	4		4	LGR5	12	71978097	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	5191593	71978097	61873798	372	35895											
USP44	84101	broad.mit.edu	37	chr12	95927916	95927916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagcagctaaggcaagcCcaaatggactcggtcgtgtt	14	9	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95927916	A	A	95927916	3	1	18	1	0	0	0	0	1	0	0	0	17202	624	22	2	2041	2	USP44	12	95927916	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	23949819	95927916	37923979	373	35896											
NEDD1	121441	broad.mit.edu	37	chr12	97331233	97331233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttgtttttttgtttttGgcttgcatataattagcaca	6	4	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97331233	T	T	97331233	1	4	18	0	1	0	0	0	0	0	0	0	10404	1363	47	2		2	NEDD1	12	97331233	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1403317	97331233	36520662	374	35897											
CHST11	50515	broad.mit.edu	37	chr12	104851171	104851171	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcccggacaccccggtccCcgcagccaggacaaagccat	9	19	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104851171	T	T	104851171	1	4	18	0	1	0	0	0	0	0	0	0	3430	638	22	4		4	CHST11	12	104851171	5'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08	7519938	104851171	29000724	375	35898											
SVOP	55530	broad.mit.edu	37	chr12	109332689	109332689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcgattgccttttcctGgttccctgacagcacatcat	10	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109332689	T	T	109332689	3	4	18	1	0	0	0	0	1	0	0	0	15541	1357	47	2	867	2	SVOP	12	109332689	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	4481518	109332689	24519206	376	35899											
C12orf51	283450	broad.mit.edu	37	chr12	112654685	112654685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggtgtcatcatcggtgtctCcataggaaacgatttcaatt	9	9	4	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112654685	A	A	112654685	3	1	18	1	0	0	0	0	1	0	0	0	1709	855	30	3	6099	3	C12orf51	12	112654685	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3321996	112654685	21197210	377	35900											
GCN1L1	10985	broad.mit.edu	37	chr12	120565869	120565869	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaaaaatgaatgttaaccCcagaactagagacactgagg	9	8	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120565869	T	T	120565869	1	4	18	0	1	0	0	0	0	0	0	0	6361	638	22	4		4	GCN1L1	12	120565869	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	7911184	120565869	13286026	378	35901											
GCN1L1	10985	broad.mit.edu	37	chr12	120582655	120582655	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaccctgcaacaaaggacaGaatgagtccactggatctga	9	11	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120582655	C	C	120582655	1	2	18	0	1	0	0	0	0	0	0	0	6361	957	33	4		4	GCN1L1	12	120582655	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	16786	120582655	13269240	379	35902											
GCN1L1	10985	broad.mit.edu	37	chr12	120613618	120613618	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcactgcactggcgtgccaGgttccgcagtgccagcacag	13	14	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120613618	C	C	120613618	3	2	18	1	0	0	0	0	1	0	0	0	6361	991	35	4	7234	4	GCN1L1	12	120613618	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	30963	120613618	13238277	380	35903											
ZNF664	144348	broad.mit.edu	37	chr12	124496938	124496938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacataagaaaatccacacaGtggagaagccctataaatgt	8	8	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124496938	T	T	124496938	3	4	18	1	0	0	0	0	1	0	0	0	18199	1029	36	3	249	3	ZNF664	12	124496938	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3883320	124496938	9354957	381	35904											
TMEM132B	114795	broad.mit.edu	37	chr12	125834059	125834059	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctcgctccctgcttacctCcccacgaacttgcacatctc	4	20	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125834059	T	T	125834059	2	4	18	1	0	0	0	0	0	0	0	1	16169	842	30	4		4	TMEM132B	12	125834059	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	1337121	125834059	8017836	382	35905											
TMEM132D	121256	broad.mit.edu	37	chr12	129559341	129559341	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttggccaaatttaactttGatgtttgccgttccaacagc	7	9	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129559341	T	T	129559341	2	4	18	1	0	0	0	0	0	0	0	1	16170	1280	45	3		3	TMEM132D	12	129559341	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	3725282	129559341	4292554	383	35906											
GPR133	283383	broad.mit.edu	37	chr12	131590398	131590398	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgctcattagtttccgcctCgagccgggcacggtgagtgg	14	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131590398	G	G	131590398	2	3	18	1	0	0	0	0	0	0	0	1	6708	871	31	4		4	GPR133	12	131590398	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	2031057	131590398	2261497	384	35907											
TPTE2	93492	broad.mit.edu	37	chr13	20077267	20077267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatggatggatgcatggatGcatggatggatatatttgtt	14	2	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20077267	T	T	20077267	1	4	18	0	1	0	0	0	0	0	0	0	16555	1334	46	3		3	TPTE2	13	20077267	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08		20077267	95092611	385	35908											
MTUS2	23281	broad.mit.edu	37	chr13	29881649	29881649	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttgtcagttgtggatctGacctgctgtcttgaaaaacc	9	9	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29881649	T	T	29881649	1	4	18	0	1	0	0	0	0	0	0	0	10060	1305	45	3		3	MTUS2	13	29881649	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	9804382	29881649	85288229	386	35909											
C13orf26	122046	broad.mit.edu	37	chr13	31513891	31513891	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgcattcacgcctaaaaCaggagcagtgcctgccttaa	9	12	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31513891	T	T	31513891	3	4	18	1	0	0	0	0	1	0	0	0	1735	478	17	4	128	4	C13orf26	13	31513891	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1632242	31513891	83655987	387	35910											
FRY	10129	broad.mit.edu	37	chr13	32660242	32660242	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagaggaaatttcattgGttcttgagagtaggggtctc	12	5	4	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32660242	C	C	32660242	1	2	18	0	1	0	0	0	0	0	0	0	6123	1276	44	4		4	FRY	13	32660242	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1146351	32660242	82509636	388	35911											
PDS5B	23047	broad.mit.edu	37	chr13	33344830	33344830	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtgcaattgaatccacacAgtccacaccacagaaaggac	7	12	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33344830	T	T	33344830	3	4	18	1	0	0	0	0	1	0	0	0	11786	188	7	5	4229	5	PDS5B	13	33344830	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	684588	33344830	81825048	389	35912											
FREM2	341640	broad.mit.edu	37	chr13	39261752	39261752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccgtgaagtctggctggatCccctgcatgacctggtgttg	14	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39261752	T	T	39261752	3	4	18	1	0	0	0	0	1	0	0	0	6105	855	30	4	273	4	FREM2	13	39261752	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	5916922	39261752	75908126	390	35913											
NHLRC3	387921	broad.mit.edu	37	chr13	39622188	39622188	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctagtatcagaaagatttGtttttgtatcattaagaatc	6	4	3	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39622188	T	T	39622188	1	4	18	0	1	0	0	0	0	0	0	0	10502	1392	48	3		3	NHLRC3	13	39622188	3'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	360436	39622188	75547690	391	35914											
NAA16	79612	broad.mit.edu	37	chr13	41949464	41949464	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctcaatttaacacattgCatcttttgattaaagtggtt	5	6	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41949464	T	T	41949464	1	4	18	0	1	0	0	0	0	0	0	0	10213	725	25	4		4	NAA16	13	41949464	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2327276	41949464	73220414	392	35915											
NEK5	341676	broad.mit.edu	37	chr13	52678775	52678775	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagtgccttaaatttgtgtCgctttacaattttatgtaag	7	6	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52678775	G	G	52678775	1	3	18	0	1	0	0	0	0	0	0	0	10422	899	31	4		4	NEK5	13	52678775	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	10729311	52678775	62491103	393	35916											
MYCBP2	23077	broad.mit.edu	37	chr13	77656020	77656020	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atactgatgctaaaactctcTtcactatcgccatcatctga	4	12	4	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77656020	G	G	77656020	3	3	18	1	0	0	0	0	1	0	0	0	10112	1606	56	5	2971	5	MYCBP2	13	77656020	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	24977245	77656020	37513858	394	35917											
UGGT2	55757	broad.mit.edu	37	chr13	96599451	96599451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagaagatgaacaaggaCtgttataattacctcttgaa	7	5	1	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96599451	A	A	96599451	1	1	18	0	1	0	0	0	0	0	0	0	17068	580	20	3		3	UGGT2	13	96599451	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	18943431	96599451	18570427	395	35918											
STK24	8428	broad.mit.edu	37	chr13	99127205	99127205	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtccgccagcttcacctcgCcatgctcagacagcaggacg	10	16	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99127205	T	T	99127205	3	4	18	1	0	0	0	0	1	0	0	0	15411	739	26	4	856	4	STK24	13	99127205	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2527754	99127205	16042673	396	35919											
ITGBL1	9358	broad.mit.edu	37	chr13	102105283	102105286	+	Splice_Site	DEL	GTAA	-	-													agcttctcgccatctctgagGtaagtttggtttgttattct							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102105286	-	-	102105283	8	5	18	1	0	1	0	1	0	0	1	0	7972	1275	44	0	101	0	ITGBL1	13	102105283	Splice_Site	DEL	GTAA	TCGA-05-4418-01A-01D-1265-08	2978078	102105283	13064595	397	35920											
FGF14	2259	broad.mit.edu	37	chr13	102379249	102379249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagaaagtttcccagcatGgtgaaagagtgctttggcat	11	7	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102379249	T	T	102379249	1	4	18	0	1	0	0	0	0	0	0	0	5900	1363	47	2		2	FGF14	13	102379249	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	273966	102379249	12790629	398	35921											
COL4A1	1282	broad.mit.edu	37	chr13	110831815	110831815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaattgatttgcaaagtcaGtatttttatcaaaccaatag	5	6	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110831815	A	A	110831815	1	1	18	0	1	0	0	0	0	0	0	0	3721	1044	36	4		4	COL4A1	13	110831815	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	8452566	110831815	4338063	399	35922											
OR11H12	440153	broad.mit.edu	37	chr14	19378076	19378076	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgccaaactggtcatActgtgctgggtttgtggatt	12	8	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19378076	C	C	19378076	2	2	18	1	0	0	0	0	0	0	0	1	11021	381	14	5		5	OR11H12	14	19378076	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08		19378076	87971464	400	35923											
OR4Q3	441669	broad.mit.edu	37	chr14	20216428	20216428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttacacagtgattacacCtatgttgaaccccctcatct	5	12	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20216428	A	A	20216428	3	1	18	1	0	0	0	0	1	0	0	0	11175	681	24	2	844	2	OR4Q3	14	20216428	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	838352	20216428	87133112	401	35924											
OR4N5	390437	broad.mit.edu	37	chr14	20612554	20612554	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctggcctcctatgcagtCatcctctgtcgtataaggga	9	12	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20612554	T	T	20612554	2	4	18	1	0	0	0	0	0	0	0	1	11173	813	29	4		4	OR4N5	14	20612554	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	396126	20612554	86736986	402	35925											
HOMEZ	57594	broad.mit.edu	37	chr14	23746238	23746238	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgagcaggtgttcatTgctgtctagctcactggtct	12	8	4	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23746238	A	A	23746238	3	1	18	1	0	0	0	0	1	0	0	0	7348	1812	63	5	1457	5	HOMEZ	14	23746238	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	3133684	23746238	83603302	403	35926											
PABPN1	8106	broad.mit.edu	37	chr14	23777951	23777951	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactggaactcttcctctcCtcttctctccactctttcct	3	17	5	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23777951	T	T	23777951	1	4	18	0	1	0	0	0	0	0	0	0	11462	696	24	4		4	PABPN1	14	23777951	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	31713	23777951	83571589	404	35927											
RNF31	55072	broad.mit.edu	37	chr14	24620512	24620512	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccttttcctgtcaggaggCccggagagcctggctggatc	14	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24620512	G	G	24620512	3	3	18	1	0	0	0	0	1	0	0	0	13598	739	26	4	1695	4	RNF31	14	24620512	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	842561	24620512	82729028	405	35928											
RNF31	55072	broad.mit.edu	37	chr14	24620762	24620762	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcattgttccagcacggAggtgatgtgtcacgggccct	14	11	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24620762	T	T	24620762	2	4	18	1	0	0	0	0	0	0	0	1	13598	291	11	5		5	RNF31	14	24620762	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08	250	24620762	82728778	406	35929											
CTSG	1511	broad.mit.edu	37	chr14	25044428	25044428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaccgaagagctccgcaGggctgtgttcctggctggcc	13	14	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25044428	T	T	25044428	1	4	18	0	1	0	0	0	0	0	0	0	4069	1015	35	2		2	CTSG	14	25044428	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	423666	25044428	82305112	407	35930											
PRKD1	5587	broad.mit.edu	37	chr14	30103853	30103853	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtgaaactttacaaaaTtcacatctcatgtttagtaa	4	8	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30103853	C	C	30103853	1	2	18	0	1	0	0	0	0	0	0	0	12624	1508	52	5		5	PRKD1	14	30103853	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	5059425	30103853	77245687	408	35931											
INSM2	84684	broad.mit.edu	37	chr14	36004201	36004201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggaggaggagcccggagCgccgtcccggggcttggggg	21	11	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36004201	A	A	36004201	3	1	18	1	0	0	0	0	1	0	0	0	7842	768	27	3	745	3	INSM2	14	36004201	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	5900348	36004201	71345339	409	35932											
SOS2	6655	broad.mit.edu	37	chr14	50649236	50649236	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaggactgctttcatcaGtcatttcaactgtgtcttca	8	9	6	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50649236	A	A	50649236	3	1	18	1	0	0	0	0	1	0	0	0	15051	1029	36	4	3267	4	SOS2	14	50649236	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	14645035	50649236	56700304	410	35933											
FRMD6	122786	broad.mit.edu	37	chr14	52186866	52186866	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgggccagcgggagcagtgCgggcagcatgaaacacaagc	17	11	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52186866	T	T	52186866	3	4	18	1	0	0	0	0	1	0	0	0	6114	768	27	4	1132	4	FRMD6	14	52186866	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1537630	52186866	55162674	411	35934											
NID2	22795	broad.mit.edu	37	chr14	52521051	52521051	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttagtctaaataaaaaGgaaacagtcattgtaacaaa	6	5	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52521051	A	A	52521051	1	1	18	0	1	0	0	0	0	0	0	0	10510	1015	35	4		4	NID2	14	52521051	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	334185	52521051	54828489	412	35935											
C14orf37	145407	broad.mit.edu	37	chr14	58471506	58471506	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattactcgatcttgcatgCtgttgaattctctctgctag	8	10	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58471506	T	T	58471506	3	4	18	1	0	0	0	0	1	0	0	0	1784	797	28	4	55	4	C14orf37	14	58471506	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	5950455	58471506	48878034	413	35936											
DAAM1	23002	broad.mit.edu	37	chr14	59789426	59789426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttttttttcacacttttGgttagaactgactattgggt	10	5	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59789426	T	T	59789426	1	4	18	0	1	0	0	0	0	0	0	0	4248	1363	47	2		2	DAAM1	14	59789426	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1317920	59789426	47560114	414	35937											
ZFYVE26	23503	broad.mit.edu	37	chr14	68272236	68272236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggcagtgtgtccagcCcaggagtacaagcaggcaac	13	12	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68272236	A	A	68272236	3	1	18	1	0	0	0	0	1	0	0	0	17794	623	22	2	6646	2	ZFYVE26	14	68272236	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	8482810	68272236	39077304	415	35938											
ZFP36L1	677	broad.mit.edu	37	chr14	69259708	69259708	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgtgtcgcgaaggtccCggtgcggggaaggcgcagcc	19	11	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69259708	A	A	69259708	1	1	18	0	1	0	0	0	0	0	0	0	17772	667	23	1		1	ZFP36L1	14	69259708	5'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08	987472	69259708	38089832	416	35939											
DPF3	8110	broad.mit.edu	37	chr14	73220047	73220047	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcttgcgccagcagcgggCagggtatgtatacagctggc	14	11	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73220047	G	G	73220047	3	3	18	1	0	0	0	0	1	0	0	0	4758	710	25	4	875	4	DPF3	14	73220047	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3960339	73220047	34129493	417	35940											
NRXN3	9369	broad.mit.edu	37	chr14	79175581	79175581	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttataagaataatgacAtccgtctggagctgtctcgc	9	8	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79175581	T	T	79175581	3	4	18	1	0	0	0	0	1	0	0	0	10762	217	8	5	130	5	NRXN3	14	79175581	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	5955534	79175581	28173959	418	35941											
KCNK10	54207	broad.mit.edu	37	chr14	88652442	88652442	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccttcgccgtgtctcccGgaactcagccgtgacattgg	12	14	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88652442	T	T	88652442	2	4	18	1	0	0	0	0	0	0	0	1	8129	1115	39	1		1	KCNK10	14	88652442	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	9476861	88652442	18697098	419	35942											
KCNK10	54207	broad.mit.edu	37	chr14	88729728	88729728	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggcaaccaccgtcttccActtcatgacggtctgcaagc	9	14	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88729728	G	G	88729728	3	3	18	1	0	0	0	0	1	0	0	0	8129	159	6	5	1435	5	KCNK10	14	88729728	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	77286	88729728	18619812	420	35943											
GOLGA5	9950	broad.mit.edu	37	chr14	93305653	93305653	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccctcagtgtacagtgGgcctttggtaaaaattggtt	11	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93305653	T	T	93305653	1	4	18	0	1	0	0	0	0	0	0	0	6620	1247	43	2		2	GOLGA5	14	93305653	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	4575925	93305653	14043887	421	35944											
ATG2B	55102	broad.mit.edu	37	chr14	96798623	96798623	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcggaaactaacaacaaAtgtcttatttttacttacat	4	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96798623	G	G	96798623	1	3	18	0	1	0	0	0	0	0	0	0	1098	116	4	5		5	ATG2B	14	96798623	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	3492970	96798623	10550917	422	35945											
BCL11B	64919	broad.mit.edu	37	chr14	99724120	99724120	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccaggccacttggctcctCtatctccagaccctcgtctt	6	19	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99724120	T	T	99724120	3	4	18	1	0	0	0	0	1	0	0	0	1369	922	32	4	2581	4	BCL11B	14	99724120	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2925497	99724120	7625420	423	35946											
DIO3	1735	broad.mit.edu	37	chr14	102028496	102028497	+	Missense_Mutation	DNP	CC	AA	AA													atcatcccacagcaccggagCctggaggaccgggtcagcgc							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	102028497	AA	AA	102028496	3	1	18	1	0	0	0	0	1	0	0	0	4566	738	26	3	665	3	DIO3	14	102028496	Missense_Mutation	DNP	CC	TCGA-05-4418-01A-01D-1265-08	2304376	102028496	5321044	424	35947											
TDRD9	122402	broad.mit.edu	37	chr14	104464825	104464825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgggagtggtcggtgcGtggccaaacgtttctgcctg	18	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104464825	T	T	104464825	1	4	18	0	1	0	0	0	0	0	0	0	15858	1160	40	3		3	TDRD9	14	104464825	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	2436329	104464825	2884715	425	35948											
CYFIP1	23191	broad.mit.edu	37	chr15	22925774	22925774	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtccttatgtgttgttcCagcccaggatggcggcccag	15	11	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22925774	T	T	22925774	1	4	18	0	1	0	0	0	0	0	0	0	4170	609	21	4		4	CYFIP1	15	22925774	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08		22925774	79605618	426	35949											
GABRA5	2558	broad.mit.edu	37	chr15	27185181	27185181	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcttatcacaggtgtcCttttggctgaaccgggaatc	11	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27185181	A	A	27185181	2	1	18	1	0	0	0	0	0	0	0	1	6224	668	24	2		2	GABRA5	15	27185181	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	4259407	27185181	75346211	427	35950											
OCA2	4948	broad.mit.edu	37	chr15	28096577	28096577	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatgagcggcggtgcgggCaggccaacctcagggtcgtg	17	11	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28096577	A	A	28096577	2	1	18	1	0	0	0	0	0	0	0	1	10910	697	25	3		3	OCA2	15	28096577	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	911396	28096577	74434815	428	35951											
APBA2	321	broad.mit.edu	37	chr15	29400673	29400673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcccgtccaatggggcaGgctatgtctggcagcctggt	14	12	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29400673	T	T	29400673	1	4	18	0	1	0	0	0	0	0	0	0	759	1015	35	2		2	APBA2	15	29400673	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1304096	29400673	73130719	429	35952											
MGA	23269	broad.mit.edu	37	chr15	42041781	42041781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagcaagaaacgaagaaGgttctacagtcagaaggaga	13	5	2	5			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42041781	T	T	42041781	3	4	18	1	0	0	0	0	1	0	0	0	9633	991	35	2	6038	2	MGA	15	42041781	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	12641108	42041781	60489611	430	35953											
TGM7	116179	broad.mit.edu	37	chr15	43584108	43584108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtaatataacagccttaCataacagggttgtgtaagga	10	5	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43584108	A	A	43584108	1	1	18	0	1	0	0	0	0	0	0	0	15958	493	17	3		3	TGM7	15	43584108	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1542327	43584108	58947284	431	35954											
DUOX2	50506	broad.mit.edu	37	chr15	45391598	45391598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccatcattcacaaagacGttggggaatatgcaggccag	11	10	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45391598	T	T	45391598	3	4	18	1	0	0	0	0	1	0	0	0	4841	1136	40	3	1184	3	DUOX2	15	45391598	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	1807490	45391598	57139794	432	35955											
SEMA6D	80031	broad.mit.edu	37	chr15	48055321	48055321	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagtatatgcatttggcTtgaattgtggacttgtactg	12	5	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48055321	C	C	48055321	1	2	18	0	1	0	0	0	0	0	0	0	14155	1624	56	5		5	SEMA6D	15	48055321	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	2663723	48055321	54476071	433	35956											
SEMA6D	80031	broad.mit.edu	37	chr15	48063266	48063266	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttccaaatgctacccatGactacaacacgtctttctca	3	14	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48063266	T	T	48063266	3	4	18	1	0	0	0	0	1	0	0	0	14155	1290	45	3	2619	3	SEMA6D	15	48063266	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	7945	48063266	54468126	434	35957											
CEP152	22995	broad.mit.edu	37	chr15	49030736	49030736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtatctgaaagataacCggatggtgaaaactgtttgg	11	6	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49030736	A	A	49030736	3	1	18	1	0	0	0	0	1	0	0	0	3278	652	23	1	293	1	CEP152	15	49030736	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	967470	49030736	53500656	435	35958											
TEX9	374618	broad.mit.edu	37	chr15	56657645	56657645	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaaccgcgtcgcagtcgccGaagatggcggggcgaagtct	16	11	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56657645	T	T	56657645	1	4	18	0	1	0	0	0	0	0	0	0	15907	1072	37	3		3	TEX9	15	56657645	5'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	7626909	56657645	45873747	436	35959											
TPM1	7168	broad.mit.edu	37	chr15	63362066	63362066	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctgcttgctgacctgtaCagatcaactctaccagcaac	6	14	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63362066	T	T	63362066	1	4	18	0	1	0	0	0	0	0	0	0	16529	493	17	4		4	TPM1	15	63362066	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	6704421	63362066	39169326	437	35960											
NOX5	79400	broad.mit.edu	37	chr15	69320507	69320507	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaacaaattcaaagcccAggccctgcggccacagttgt	10	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69320507	G	G	69320507	1	3	18	0	1	0	0	0	0	0	0	0	10654	203	7	5		5	NOX5	15	69320507	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	5958441	69320507	33210885	438	35961											
LRRC49	54839	broad.mit.edu	37	chr15	71152436	71152436	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggctccaccagggctgtggTtgaagaagattgagacccgt	14	10	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71152436	G	G	71152436	1	3	18	0	1	0	0	0	0	0	0	0	9093	1740	60	5		5	LRRC49	15	71152436	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	1831929	71152436	31378956	439	35962											
MYO9A	4649	broad.mit.edu	37	chr15	72146723	72146723	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggcactatcttacctgtaTctagaccctgccgaagctcc	8	14	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72146723	C	C	72146723	3	2	18	1	0	0	0	0	1	0	0	0	10178	1435	50	5	1337	5	MYO9A	15	72146723	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	994287	72146723	30384669	440	35963											
CD276	80381	broad.mit.edu	37	chr15	74002065	74002065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctggccctcttggctgGgagagggacatatgggaaag	18	7	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74002065	T	T	74002065	1	4	18	0	1	0	0	0	0	0	0	0	3022	1247	43	2		2	CD276	15	74002065	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1855342	74002065	28529327	441	35964											
MAN2C1	4123	broad.mit.edu	37	chr15	75652055	75652055	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggccctcaggacctggCtccccagcacacagggctgc	13	16	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75652055	T	T	75652055	2	4	18	1	0	0	0	0	0	0	0	1	9310	796	28	4		4	MAN2C1	15	75652055	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	1649990	75652055	26879337	442	35965											
CSPG4	1464	broad.mit.edu	37	chr15	75975009	75975009	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcacttgcttctgggccgtCactcggaagaagtgtccggg	14	11	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75975009	G	G	75975009	2	3	18	1	0	0	0	0	0	0	0	1	3994	813	29	4		4	CSPG4	15	75975009	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	322954	75975009	26556383	443	35966											
DET1	55070	broad.mit.edu	37	chr15	89070888	89070888	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagcagggaaactgaacttCactgtgcagggtagcattac	12	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89070888	T	T	89070888	3	4	18	1	0	0	0	0	1	0	0	0	4490	835	29	4	451	4	DET1	15	89070888	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	13095879	89070888	13460504	444	35967											
MSLNL	401827	broad.mit.edu	37	chr16	823017	823017	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgaggtgatgagccgcagcTgatcctccgggaggccttgt	16	11	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	823017	G	G	823017	3	3	18	1	0	0	0	0	1	0	0	0	9976	1580	55	5	1017	5	MSLNL	16	823017	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08		823017	89531736	445	35968											
TMC7	79905	broad.mit.edu	37	chr16	19068087	19068087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaaatggcggcggtcgGggcggggtcaccctagactt	18	9	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19068087	T	T	19068087	1	4	18	0	1	0	0	0	0	0	0	0	16113	1247	43	2		2	TMC7	16	19068087	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	18245070	19068087	71286666	446	35969											
C16orf62	57020	broad.mit.edu	37	chr16	19663257	19663257	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggagtatgattctgccaCcgttgcactgctagcgttaa	10	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19663257	T	T	19663257	1	4	18	0	1	0	0	0	0	0	0	0	1839	522	18	4		4	C16orf62	16	19663257	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	595170	19663257	70691496	447	35970											
ACSM2A	123876	broad.mit.edu	37	chr16	20486769	20486769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggatctttccaggtgatGgggctttgaggattggtaag	16	5	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20486769	T	T	20486769	1	4	18	0	1	0	0	0	0	0	0	0	183	1363	47	2		2	ACSM2A	16	20486769	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	823512	20486769	69867984	448	35971											
POLR3E	55718	broad.mit.edu	37	chr16	22328212	22328212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgggggagggcgggGgtgggctgtctgcaccctct	21	10	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22328212	A	A	22328212	1	1	18	0	1	0	0	0	0	0	0	0	12327	1247	43	4		4	POLR3E	16	22328212	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1841443	22328212	68026541	449	35972											
ERN2	10595	broad.mit.edu	37	chr16	23721608	23721608	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaccaatgggttcttgccCcctggtttcatgaaggcccc	11	13	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23721608	G	G	23721608	1	3	18	0	1	0	0	0	0	0	0	0	5280	638	22	4		4	ERN2	16	23721608	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1393396	23721608	66633145	450	35973											
PRKCB	5579	broad.mit.edu	37	chr16	23847679	23847679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcatctggtgagcgcgCgcgcgcagggcaccttcccg	14	15	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847679	A	A	23847679	1	1	18	0	1	0	0	0	0	0	0	0	12614	783	27	3		3	PRKCB	16	23847679	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	126071	23847679	66507074	451	35974											
CACNG3	10368	broad.mit.edu	37	chr16	24373225	24373225	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacgcccagcacagccttgGgggaagtgtacagagatgtc	13	12	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24373225	A	A	24373225	1	1	18	0	1	0	0	0	0	0	0	0	2584	1247	43	4		4	CACNG3	16	24373225	3'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	525546	24373225	65981528	452	35975											
TNRC6A	27327	broad.mit.edu	37	chr16	24802953	24802953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccccagaatctatacgtcGcaaaatggagattgatgatg	9	8	1	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24802953	T	T	24802953	3	4	18	1	0	0	0	0	1	0	0	0	16463	1087	38	3	3012	3	TNRC6A	16	24802953	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	429728	24802953	65551800	453	35976											
KIAA0556	23247	broad.mit.edu	37	chr16	27772805	27772805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactggcctggaagtggtgGgcaaggagggccaggcgctg	19	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27772805	T	T	27772805	3	4	18	1	0	0	0	0	1	0	0	0	8253	1232	43	2	3777	2	KIAA0556	16	27772805	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	2969852	27772805	62581948	454	35977											
SETD1A	9739	broad.mit.edu	37	chr16	30991099	30991099	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccctcttcagttcccCagctgatgaggtcctggagg	12	15	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30991099	T	T	30991099	3	4	18	1	0	0	0	0	1	0	0	0	14243	594	21	4	4042	4	SETD1A	16	30991099	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3218294	30991099	59363654	455	35978											
ITGAX	3687	broad.mit.edu	37	chr16	31374568	31374568	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggcggctctgacagtgcTgggggatgtgaatggggaca	20	6	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31374568	A	A	31374568	3	1	18	1	0	0	0	0	1	0	0	0	7959	1580	55	5	1637	5	ITGAX	16	31374568	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	383469	31374568	58980185	456	35979											
TGFB1I1	7041	broad.mit.edu	37	chr16	31484820	31484820	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccaaggtcaggggctccCaaagagcgccctgcggagcc	14	14	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31484820	A	A	31484820	2	1	18	1	0	0	0	0	0	0	0	1	15940	581	21	2		2	TGFB1I1	16	31484820	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	110252	31484820	58869933	457	35980											
GPT2	84706	broad.mit.edu	37	chr16	46962902	46962902	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaacttcctggagaagtAcgcgtgaggacgcctgagcc	12	12	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46962902	G	G	46962902	3	3	18	1	0	0	0	0	1	0	0	0	6804	391	14	5	1607	5	GPT2	16	46962902	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	15478082	46962902	43391851	458	35981											
ABCC12	94160	broad.mit.edu	37	chr16	48141224	48141224	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatcttccaatgccaaaggGaaactcacccgtgagccctt	8	14	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48141224	A	A	48141224	1	1	18	0	1	0	0	0	0	0	0	0	52	1189	41	4		4	ABCC12	16	48141224	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1178322	48141224	42213529	459	35982											
ZFHX3	463	broad.mit.edu	37	chr16	72830619	72830619	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttggaaaacaacttgccgcAggagtcacactcgagctttt	10	10	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72830619	T	T	72830619	3	4	18	1	0	0	0	0	1	0	0	0	17760	188	7	5	5157	5	ZFHX3	16	72830619	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	24689395	72830619	17524134	460	35983											
CLEC18B	497190	broad.mit.edu	37	chr16	74443682	74443682	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgggagccaggcccGtccccaagcccccagccctg	13	19	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74443682	A	A	74443682	1	1	18	0	1	0	0	0	0	0	0	0	3535	1160	40	4		4	CLEC18B	16	74443682	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1613063	74443682	15911071	461	35984											
PKD1L2	114780	broad.mit.edu	37	chr16	81181802	81181802	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgggctgtggggagggagtCaggttgggggacccccggtc	21	8	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81181802	A	A	81181802	2	1	18	1	0	0	0	0	0	0	0	1	12060	813	29	3		3	PKD1L2	16	81181802	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	6738120	81181802	9172951	462	35985											
IRF8	3394	broad.mit.edu	37	chr16	85945192	85945192	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaggcaaactaggcgtggcAactgctggctgcgtgaatga	15	8	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85945192	T	T	85945192	2	4	18	1	0	0	0	0	0	0	0	1	7906	117	5	5		5	IRF8	16	85945192	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08	4763390	85945192	4409561	463	35986											
VPS53	55275	broad.mit.edu	37	chr17	600720	600720	+	Missense_Mutation	SNP	G	T	T													agttcgaatattgtcatccaGtctcctagcaaaacagttca					rs138068150		TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	600720	T	T	600720	3	4	18	1	0	0	0	0	1	0	0	0	17342	1020	36	3	2366	3	VPS53	17	600720	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08		600720	80594490	464	35987	201	2									
VPS53	55275	broad.mit.edu	37	chr17	600722	600722	+	Missense_Mutation	SNP	C	T	T													ttcgaatattgtcatccagtCtcctagcaaaacagttcaag							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	600722	T	T	600722	3	4	18	1	0	0	0	0	1	0	0	0	17342	913	32	4	2368	4	VPS53	17	600722	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2	600722	80594488	465	35988	201	2									
SMG6	23293	broad.mit.edu	37	chr17	1964759	1964760	+	3'UTR	INS	-	G	G													cctttcaggaacggttccacINSggggggggggccccagtgtg					rs145926620	by1000genomes	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1964760	G	G	1964759	6	5	18	0	1	1	1	0	0	0	0	0	14911	551	19	0		0	SMG6	17	1964759	3'UTR	INS	-	TCGA-05-4418-01A-01D-1265-08	1364037	1964759	79230451	466	35989											
TRPV3	162514	broad.mit.edu	37	chr17	3446929	3446929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccagctgtgcactgaagCcagaaaatgtttccaactca	9	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3446929	A	A	3446929	1	1	18	0	1	0	0	0	0	0	0	0	16722	754	26	3		3	TRPV3	17	3446929	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1482170	3446929	77748281	467	35990											
POLR2A	5430	broad.mit.edu	37	chr17	7405880	7405880	+	Missense_Mutation	SNP	G	A	A													aagtccatggagtcagtgatGgtgaagtacgacgcgactgt							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7405880	A	A	7405880	3	1	18	1	0	0	0	0	1	0	0	0	12309	1348	47	4	2678	4	POLR2A	17	7405880	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	3958951	7405880	73789330	468	35991	202	2									
POLR2A	5430	broad.mit.edu	37	chr17	7405883	7405883	+	Silent	SNP	G	A	A													tccatggagtcagtgatggtGaagtacgacgcgactgtgcg							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7405883	A	A	7405883	2	1	18	1	0	0	0	0	0	0	0	1	12309	1277	45	4		4	POLR2A	17	7405883	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	3	7405883	73789327	469	35992	202	2									
GAS7	8522	broad.mit.edu	37	chr17	9820602	9820602	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgctctctgacccacagCtccctgtctttggccgggtc	10	15	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9820602	G	G	9820602	3	3	18	1	0	0	0	0	1	0	0	0	6312	796	28	4	60	4	GAS7	17	9820602	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2414719	9820602	71374608	470	35993											
MYH13	8735	broad.mit.edu	37	chr17	10210316	10210316	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcctggatcgagttctcCacctctgcctggcactgagc	10	15	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10210316	A	A	10210316	2	1	18	1	0	0	0	0	0	0	0	1	10126	581	21	2		2	MYH13	17	10210316	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	389714	10210316	70984894	471	35994											
MYH8	4626	broad.mit.edu	37	chr17	10314198	10314198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctagcacaaacatgtGgtggttgaaaaactgttgca	10	8	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10314198	T	T	10314198	3	4	18	1	0	0	0	0	1	0	0	0	10135	1348	47	2	4434	2	MYH8	17	10314198	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	103882	10314198	70881012	472	35995											
DNAH9	1770	broad.mit.edu	37	chr17	11568477	11568477	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagacaaaagatttctgacGcttaaaattagataataaac	5	5	1	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11568477	C	C	11568477	1	2	18	0	1	0	0	0	0	0	0	0	4648	1102	38	4		4	DNAH9	17	11568477	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1254279	11568477	69626733	473	35996											
MYO15A	51168	broad.mit.edu	37	chr17	18058480	18058480	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaaagcgtgaagcgggccGtggtcagcactgcacgagac	16	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18058480	A	A	18058480	3	1	18	1	0	0	0	0	1	0	0	0	10157	1145	40	4	8455	4	MYO15A	17	18058480	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	6490003	18058480	63136730	474	35997											
ZNF286B	729288	broad.mit.edu	37	chr17	18575737	18575737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggggagctctcgatggcgCgggtgatcaggtccgcgtag	18	11	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18575737	A	A	18575737	1	1	18	0	1	0	0	0	0	0	0	0	17950	783	27	3		3	ZNF286B	17	18575737	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	517257	18575737	62619473	475	35998											
CCDC144NL	339184	broad.mit.edu	37	chr17	20796673	20796673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttacccatggtaggacCaccaaaaataattcactatc	4	10	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20796673	A	A	20796673	1	1	18	0	1	0	0	0	0	0	0	0	2805	609	21	2		2	CCDC144NL	17	20796673	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2220936	20796673	60398537	476	35999											
KCNJ12	3768	broad.mit.edu	37	chr17	21318852	21318852	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacgagaagtcacagcgCtacctggctgacatgttcac	11	11	2	2	rs149992288	byFrequency	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21318852	A	A	21318852	2	1	18	1	0	0	0	0	0	0	0	1	8116	784	28	3		3	KCNJ12	17	21318852	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	522179	21318852	59876358	477	36000											
NOS2	4843	broad.mit.edu	37	chr17	26114745	26114745	+	Silent	SNP	T	C	C													tggttgacaaattcgatagcTtgaggtagaagctcatctgg							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26114745	C	C	26114745	2	2	18	1	0	0	0	0	0	0	0	1	10638	1606	56	5		5	NOS2	17	26114745	Silent	SNP	T	TCGA-05-4418-01A-01D-1265-08	4795893	26114745	55080465	478	36001	203	2									
NOS2	4843	broad.mit.edu	37	chr17	26114747	26114747	+	Missense_Mutation	SNP	G	C	C													gttgacaaattcgatagcttGaggtagaagctcatctggag							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26114747	C	C	26114747	3	2	18	1	0	0	0	0	1	0	0	0	10638	1299	45	4	3129	4	NOS2	17	26114747	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	2	26114747	55080463	479	36002	203	2									
CPD	1362	broad.mit.edu	37	chr17	28791816	28791816	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgaagaggaaacattatAttctagcaaacattgaaaaa	6	6	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28791816	G	G	28791816	3	3	18	1	0	0	0	0	1	0	0	0	3830	449	16	5	4209	5	CPD	17	28791816	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	2677069	28791816	52403394	480	36003											
ACACA	31	broad.mit.edu	37	chr17	35605094	35605094	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtcacctgtagggaatgaGaatgaggatcagtgtgtccc	14	7	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35605094	T	T	35605094	1	4	18	0	1	0	0	0	0	0	0	0	106	957	33	3		3	ACACA	17	35605094	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	6813278	35605094	45590116	481	36004											
CWC25	54883	broad.mit.edu	37	chr17	36958856	36958856	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgaaggctgggctccaTgtgcaaacacagaaacactg	12	10	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36958856	A	A	36958856	1	1	18	0	1	0	0	0	0	0	0	0	4102	1479	51	5		5	CWC25	17	36958856	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	1353762	36958856	44236354	482	36005											
PLXDC1	57125	broad.mit.edu	37	chr17	37295841	37295841	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtaggacaagcacaccTggggcagctggtgagacctc	14	11	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37295841	G	G	37295841	1	3	18	0	1	0	0	0	0	0	0	0	12212	1595	55	5		5	PLXDC1	17	37295841	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	336985	37295841	43899369	483	36006											
GRB7	2886	broad.mit.edu	37	chr17	37902578	37902578	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctcccttttccctgcacaAgaagtgggaggctgagtgcg	13	11	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37902578	T	T	37902578	1	4	18	0	1	0	0	0	0	0	0	0	6825	87	3	5		5	GRB7	17	37902578	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	606737	37902578	43292632	484	36007											
CASC3	22794	broad.mit.edu	37	chr17	38297884	38297884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatgacaggttttttcctAtggtatagatcagaaatgct	9	5	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38297884	G	G	38297884	1	3	18	0	1	0	0	0	0	0	0	0	2687	464	16	5		5	CASC3	17	38297884	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	395306	38297884	42897326	485	36008											
TNS4	84951	broad.mit.edu	37	chr17	38636951	38636951	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccttcctgtaccactcaCccgcagatttcttctggcag	6	17	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38636951	A	A	38636951	5	1	18	1	0	0	0	0	0	0	1	0	16468	521	18	3	425	3	TNS4	17	38636951	Splice_Site	SNP	C	TCGA-05-4418-01A-01D-1265-08	339067	38636951	42558259	486	36009											
KRT25	147183	broad.mit.edu	37	chr17	38905419	38905419	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgtgacacgtgtttacctAtgtaacaaaccttccaatgt	6	11	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38905419	G	G	38905419	1	3	18	0	1	0	0	0	0	0	0	0	8533	464	16	5		5	KRT25	17	38905419	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	268468	38905419	42289791	487	36010											
KRTAP4-2	85291	broad.mit.edu	37	chr17	39334304	39334304	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggacacacagcagctgGggcggcagcaggtggtcctg	17	11	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39334304	A	A	39334304	3	1	18	1	0	0	0	0	1	0	0	0	8623	1232	43	4	301	4	KRTAP4-2	17	39334304	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	428885	39334304	41860906	488	36011											
G6PC	2538	broad.mit.edu	37	chr17	41055867	41055867	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgtgaaatccttctcagGctacactcttcttgaaggtg	8	10	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41055867	A	A	41055867	1	1	18	0	1	0	0	0	0	0	0	0	6203	1218	42	4		4	G6PC	17	41055867	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1721563	41055867	40139343	489	36012											
CRHR1	1394	broad.mit.edu	37	chr17	43907550	43907550	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcgtggtccagctaacCatgagccccgaggtccacca	11	14	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43907550	A	A	43907550	2	1	18	1	0	0	0	0	0	0	0	1	3903	581	21	2		2	CRHR1	17	43907550	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	2851683	43907550	37287660	490	36013											
MYST2	11143	broad.mit.edu	37	chr17	47872934	47872934	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagctccaaccaagtgaataAgtttcagatggcttattcaa	8	8	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47872934	C	C	47872934	1	2	18	0	1	0	0	0	0	0	0	0	10197	87	3	5		5	MYST2	17	47872934	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	3965384	47872934	33322276	491	36014											
ITGA3	3675	broad.mit.edu	37	chr17	48148423	48148423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcacacacggattggccgGcacctgtatgccaggccctg	12	14	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48148423	T	T	48148423	1	4	18	0	1	0	0	0	0	0	0	0	7947	1218	42	3		3	ITGA3	17	48148423	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	275489	48148423	33046787	492	36015											
ITGA3	3675	broad.mit.edu	37	chr17	48148712	48148713	+	Frame_Shift_Ins	INS	-	A	A													gcagcttcatcctgcaccccINSaaaaacatcaccattgtgac							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48148713	A	A	48148712	7	5	18	1	0	1	1	0	0	0	0	0	7947	581	21	0	811	0	ITGA3	17	48148712	Frame_Shift_Ins	INS	-	TCGA-05-4418-01A-01D-1265-08	289	48148712	33046498	493	36016											
C17orf64	124773	broad.mit.edu	37	chr17	58504024	58504024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccctgagacaaatgctGgagggaggaagcgctgtgct	15	9	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58504024	T	T	58504024	1	4	18	0	1	0	0	0	0	0	0	0	1888	1363	47	2		2	C17orf64	17	58504024	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	10355312	58504024	22691186	494	36017											
AXIN2	8313	broad.mit.edu	37	chr17	63534419	63534419	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctcagctgcaaaggtggCgggttccacgggggtcatct	15	11	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63534419	G	G	63534419	3	3	18	1	0	0	0	0	1	0	0	0	1242	768	27	4	1457	4	AXIN2	17	63534419	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	5030395	63534419	17660791	495	36018											
PRKCA	5578	broad.mit.edu	37	chr17	64770156	64770156	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggactggtgggcctatggcGtcctgttgtatgaaatgctt	14	7	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64770156	A	A	64770156	3	1	18	1	0	0	0	0	1	0	0	0	12613	1145	40	4	1630	4	PRKCA	17	64770156	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	1235737	64770156	16425054	496	36019											
BAIAP2	10458	broad.mit.edu	37	chr17	79027404	79027404	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttttctcctctgtgttcgGacccttcggagtcaccaggg	12	12	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79027404	T	T	79027404	1	4	18	0	1	0	0	0	0	0	0	0	1306	1189	41	3		3	BAIAP2	17	79027404	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	14257248	79027404	2167806	497	36020											
AZI1	22994	broad.mit.edu	37	chr17	79182788	79182788	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttggatcttctaaggttgTtgatggcctgggagccccca	13	9	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79182788	C	C	79182788	3	2	18	1	0	0	0	0	1	0	0	0	1245	1725	60	5	3126	5	AZI1	17	79182788	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	155384	79182788	2012422	498	36021											
HEXDC	284004	broad.mit.edu	37	chr17	80394589	80394589	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgctctgggactacacGgccgacctggatgtgcacgg	15	13	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80394589	T	T	80394589	2	4	18	1	0	0	0	0	0	0	0	1	7142	1103	39	1		1	HEXDC	17	80394589	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	1211801	80394589	800621	499	36022											
YES1	7525	broad.mit.edu	37	chr18	724522	724522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgttggtctttcatcagggtCcttcttccaacacagattca	7	11	5	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	724522	A	A	724522	3	1	18	1	0	0	0	0	1	0	0	0	17601	855	30	3	101	3	YES1	18	724522	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08		724522	77352726	500	36023											
LAMA1	284217	broad.mit.edu	37	chr18	7080155	7080155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttcttaagttctaaaccGtaatgctagtggaaacaaag	7	6	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7080155	T	T	7080155	1	4	18	0	1	0	0	0	0	0	0	0	8677	1160	40	3		3	LAMA1	18	7080155	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	6355633	7080155	70997093	501	36024											
PTPRM	5797	broad.mit.edu	37	chr18	8406167	8406167	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaattctggctgatggtgtAaacagctctgcaaacaatcc	9	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8406167	G	G	8406167	1	3	18	0	1	0	0	0	0	0	0	0	12914	377	13	5		5	PTPRM	18	8406167	3'UTR	SNP	A	TCGA-05-4418-01A-01D-1265-08	1326012	8406167	69671081	502	36025											
GNAL	2774	broad.mit.edu	37	chr18	11872124	11872124	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attctttacagatggaatgaGgatactggtgtactgaactt	10	5	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11872124	C	C	11872124	1	2	18	0	1	0	0	0	0	0	0	0	6571	1015	35	4		4	GNAL	18	11872124	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	3465957	11872124	66205124	503	36026											
PSMA8	143471	broad.mit.edu	37	chr18	23713903	23713903	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagcagcgggaagctcGgtggcaagcccttgtagtcc	15	12	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23713903	C	C	23713903	1	2	18	0	1	0	0	0	0	0	0	0	12779	1131	39	4		4	PSMA8	18	23713903	5'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	11841779	23713903	54363345	504	36027											
FAM59A	64762	broad.mit.edu	37	chr18	29992451	29992452	+	Intron	DNP	CC	AA	AA													atctaccaccagcacggctgCcaccaaagccaccacgacca							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29992452	AA	AA	29992451	1	1	18	0	1	0	0	0	0	0	0	0	5643	754	26	3		3	FAM59A	18	29992451	Intron	DNP	CC	TCGA-05-4418-01A-01D-1265-08	6278548	29992451	48084797	505	36028											
RNF165	494470	broad.mit.edu	37	chr18	44013518	44013518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggatggggtcgggtgagGgggcagggccagggcgtggg	25	8	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44013518	A	A	44013518	1	1	18	0	1	0	0	0	0	0	0	0	13567	1247	43	4		4	RNF165	18	44013518	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	14021067	44013518	34063730	506	36029											
SOCS6	9306	broad.mit.edu	37	chr18	67993064	67993064	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagcaaggatggtactgggGaccaatcacacgttgggagg	15	7	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67993064	A	A	67993064	3	1	18	1	0	0	0	0	1	0	0	0	15032	1174	41	4	1162	4	SOCS6	18	67993064	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	23979546	67993064	10084184	507	36030											
NETO1	81832	broad.mit.edu	37	chr18	70417886	70417886	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagagtgaaaacaacaaaCggacaaaagaagaagcaacg	11	6	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70417886	T	T	70417886	1	4	18	0	1	0	0	0	0	0	0	0	10434	551	19	4		4	NETO1	18	70417886	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	2424822	70417886	7659362	508	36031											
SBNO2	22904	broad.mit.edu	37	chr19	1110949	1110949	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctctccctgctttgctcaCcacccgaggccaaggttgca	8	18	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1110949	T	T	1110949	1	4	18	0	1	0	0	0	0	0	0	0	13975	522	18	4		4	SBNO2	19	1110949	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08		1110949	58018034	509	36032											
ATP8B3	148229	broad.mit.edu	37	chr19	1800481	1800481	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgacagggtgggtgagggGggcgggggtcccccactctg	21	11	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1800481	A	A	1800481	1	1	18	0	1	0	0	0	0	0	0	0	1200	1247	43	4		4	ATP8B3	19	1800481	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	689532	1800481	57328502	510	36033											
PIP5K1C	23396	broad.mit.edu	37	chr19	3664855	3664855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgccggatgcgtccacacCtcgatggcccaacttcttcc	8	17	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3664855	A	A	3664855	3	1	18	1	0	0	0	0	1	0	0	0	12036	681	24	2	1886	2	PIP5K1C	19	3664855	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	1864374	3664855	55464128	511	36034											
CCDC94	55702	broad.mit.edu	37	chr19	4267771	4267771	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggcggcccccaccccaGgtaaggtcacagagttccca	10	17	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4267771	T	T	4267771	4	4	18	1	0	0	0	0	0	1	0	0	2901	1014	35	2	885	2	CCDC94	19	4267771	Nonsense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	602916	4267771	54861212	512	36035											
DPP9	91039	broad.mit.edu	37	chr19	4685763	4685763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaatggaagatctctggagGaacataatccggggggcagc	15	7	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4685763	A	A	4685763	3	1	18	1	0	0	0	0	1	0	0	0	4773	1174	41	4	796	4	DPP9	19	4685763	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	417992	4685763	54443220	513	36036											
MUC16	94025	broad.mit.edu	37	chr19	9077163	9077163	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatgtctgatctgaccaaGaactagttgatgaataagcc	9	8	2	6			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9077163	T	T	9077163	3	4	18	1	0	0	0	0	1	0	0	0	10067	942	33	3	33568	3	MUC16	19	9077163	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	4391400	9077163	50051820	514	36037											
KEAP1	9817	broad.mit.edu	37	chr19	10600477	10600477	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccacgcccaccccgatccTtcgtgtcagcattggggcca	10	17	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10600477	C	C	10600477	3	2	18	1	0	0	0	0	1	0	0	0	8211	1608	56	5	508	5	KEAP1	19	10600477	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	1523314	10600477	48528506	515	36038											
NR2C2AP	126382	broad.mit.edu	37	chr19	19313820	19313820	+	Intron	DEL	A	-	-													cctcgccactgcctgtccccAcagactcttacctgctcact							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19313820	-	-	19313820	6	5	18	0	1	1	0	1	0	0	0	0	10719	174	6	0		0	NR2C2AP	19	19313820	Intron	DEL	A	TCGA-05-4418-01A-01D-1265-08	8713343	19313820	39815163	516	36039											
ZNF676	163223	broad.mit.edu	37	chr19	22363270	22363270	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacttgtagggtttctctcCagtatgaattctcttatgtt	7	8	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363270	A	A	22363270	4	1	18	1	0	0	0	0	0	1	0	0	18210	603	21	2	521	2	ZNF676	19	22363270	Nonsense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3049450	22363270	36765713	517	36040											
C19orf2	8725	broad.mit.edu	37	chr19	30502220	30502220	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacctttactggagaaaGttgactgtaacacagaagac	9	8	0	5			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30502220	C	C	30502220	1	2	18	0	1	0	0	0	0	0	0	0	1930	1044	36	4		4	C19orf2	19	30502220	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	8138950	30502220	28626763	518	36041											
ZNF536	9745	broad.mit.edu	37	chr19	30934586	30934586	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcagaagctgcaccagatCacctcccagctcagccatgc	8	16	3	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30934586	A	A	30934586	2	1	18	1	0	0	0	0	0	0	0	1	18101	816	29	3		3	ZNF536	19	30934586	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	432366	30934586	28194397	519	36042											
RGS9BP	388531	broad.mit.edu	37	chr19	33167115	33167115	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttagccacatcctgccgcGctgagggggaggctaacggg	17	11	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33167115	T	T	33167115	1	4	18	0	1	0	0	0	0	0	0	0	13423	1102	38	3		3	RGS9BP	19	33167115	5'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	2232529	33167115	25961868	520	36043											
UBA2	10054	broad.mit.edu	37	chr19	34922808	34922808	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttttacccgaaagctaatAtcgttgcctaccatgacagc	7	11	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34922808	G	G	34922808	3	3	18	1	0	0	0	0	1	0	0	0	16954	449	16	5	275	5	UBA2	19	34922808	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	1755693	34922808	24206175	521	36044											
CLIP3	25999	broad.mit.edu	37	chr19	36508689	36508689	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataccagtaacctgcagcaCgagggtgtcaggatttctca	10	11	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36508689	T	T	36508689	1	4	18	0	1	0	0	0	0	0	0	0	3566	551	19	4		4	CLIP3	19	36508689	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1585881	36508689	22620294	522	36045											
SPTBN4	57731	broad.mit.edu	37	chr19	41081361	41081361	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtagcttcctcggtggcGgaacacgcagagatcgcccg	14	13	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41081361	A	A	41081361	2	1	18	1	0	0	0	0	0	0	0	1	15239	1103	39	4		4	SPTBN4	19	41081361	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	4572672	41081361	18047622	523	36046											
ATP5SL	55101	broad.mit.edu	37	chr19	41937300	41937300	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatgagggcttcactggtAaaatgcttctgaattgactg	10	6	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41937300	C	C	41937300	1	2	18	0	1	0	0	0	0	0	0	0	1168	377	13	5		5	ATP5SL	19	41937300	3'UTR	SNP	A	TCGA-05-4418-01A-01D-1265-08	855939	41937300	17191683	524	36047											
PSG1	5669	broad.mit.edu	37	chr19	43348951	43348951	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccaatcacaagctatggGcaccaagtctcccatgacaa	6	15	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43348951	A	A	43348951	1	1	18	0	1	0	0	0	0	0	0	0	12759	1218	42	4		4	PSG1	19	43348951	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	1411651	43348951	15780032	525	36048											
ZNF221	7638	broad.mit.edu	37	chr19	44470819	44470819	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaagcatcagatggtccacAcaggagagaaaccatataat	9	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44470819	T	T	44470819	3	4	18	1	0	0	0	0	1	0	0	0	17901	159	6	5	1179	5	ZNF221	19	44470819	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	1121868	44470819	14658164	526	36049											
CEACAM20	125931	broad.mit.edu	37	chr19	45024811	45024811	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacacgtggagatacacagTcaggttcagggagatttccc	11	9	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45024811	A	A	45024811	1	1	18	0	1	0	0	0	0	0	0	0	3221	1682	58	5		5	CEACAM20	19	45024811	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	553992	45024811	14104172	527	36050											
MARK4	57787	broad.mit.edu	37	chr19	45762388	45762388	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actaccgcctgctgaggaccAttgggaagggcaactttgcc	12	12	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45762388	T	T	45762388	3	4	18	1	0	0	0	0	1	0	0	0	9407	217	8	5	199	5	MARK4	19	45762388	Missense_Mutation	SNP	A	TCGA-05-4418-01A-01D-1265-08	737577	45762388	13366595	528	36051											
PRKD2	25865	broad.mit.edu	37	chr19	47194987	47194987	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggttagctctgaagtgtcCtcacctccatagaccactcc	8	14	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47194987	G	G	47194987	1	3	18	0	1	0	0	0	0	0	0	0	12625	696	24	4		4	PRKD2	19	47194987	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1432599	47194987	11933996	529	36052											
CGB	1082	broad.mit.edu	37	chr19	49541920	49541920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcctccacctacccccGggccaccttccttagattta	6	18	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49541920	T	T	49541920	1	4	18	0	1	0	0	0	0	0	0	0	3326	1131	39	1		1	CGB	19	49541920	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	2346933	49541920	9587063	530	36053											
SYT3	84258	broad.mit.edu	37	chr19	51128409	51128409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggggtcggtgtgggacCcctactcacctccactagct	12	14	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51128409	A	A	51128409	1	1	18	0	1	0	0	0	0	0	0	0	15594	638	22	2		2	SYT3	19	51128409	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1586489	51128409	8000574	531	36054											
KLK5	25818	broad.mit.edu	37	chr19	51446843	51446843	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagtgtcagggctgtcCctgcagcaggtggggatgcc	17	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51446843	A	A	51446843	1	1	18	0	1	0	0	0	0	0	0	0	8478	638	22	2		2	KLK5	19	51446843	3'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08	318434	51446843	7682140	532	36055											
KLK7	5650	broad.mit.edu	37	chr19	51483646	51483646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcattaacatgggtctGtgtggagtagccggggtggc	18	6	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51483646	T	T	51483646	3	4	18	1	0	0	0	0	1	0	0	0	8480	1386	48	3	454	3	KLK7	19	51483646	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	36803	51483646	7645337	533	36056											
LIM2	3982	broad.mit.edu	37	chr19	51890381	51890381	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtcccagttctgccccCtccatgctgagtgaccttgg	10	14	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51890381	T	T	51890381	1	4	18	0	1	0	0	0	0	0	0	0	8867	696	24	4		4	LIM2	19	51890381	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	406735	51890381	7238602	534	36057											
ZNF616	90317	broad.mit.edu	37	chr19	52633940	52633940	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaactcagcctgtggagagaCagcccactgcaccagggggg	15	12	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52633940	G	G	52633940	1	3	18	0	1	0	0	0	0	0	0	0	18168	493	17	4		4	ZNF616	19	52633940	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	743559	52633940	6495043	535	36058											
ZNF28	7576	broad.mit.edu	37	chr19	53302177	53302177	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actaaaggctttgccacactCattgcacttgtaaggtttct	7	10	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53302177	G	G	53302177	1	3	18	0	1	0	0	0	0	0	0	0	17939	841	29	4		4	ZNF28	19	53302177	3'UTR	SNP	C	TCGA-05-4418-01A-01D-1265-08	668237	53302177	5826806	536	36059											
VN1R2	317701	broad.mit.edu	37	chr19	53762540	53762540	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtaggaacaatctctaCcccaactcttctcctgggaa	6	13	4	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53762540	A	A	53762540	4	1	18	1	0	0	0	0	0	1	0	0	17306	518	18	3	914	3	VN1R2	19	53762540	Nonsense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	460363	53762540	5366443	537	36060											
ZNF761	388561	broad.mit.edu	37	chr19	53952872	53952872	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtgatgctggagaattaTaggaacctggtctcccctgg	13	9	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53952872	C	C	53952872	2	2	18	1	0	0	0	0	0	0	0	1	18265	1413	49	5		5	ZNF761	19	53952872	Silent	SNP	T	TCGA-05-4418-01A-01D-1265-08	190332	53952872	5176111	538	36061											
ZNF813	126017	broad.mit.edu	37	chr19	53989993	53989993	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtgatgctggagaattaTaggaacctggtctccctggg	14	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53989993	C	C	53989993	2	2	18	1	0	0	0	0	0	0	0	1	18304	1413	49	5		5	ZNF813	19	53989993	Silent	SNP	T	TCGA-05-4418-01A-01D-1265-08	37121	53989993	5138990	539	36062											
NLRP12	91662	broad.mit.edu	37	chr19	54318296	54318296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctggctagtagcaccgCgtcatattagctgcgattac	10	11	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54318296	A	A	54318296	1	1	18	0	1	0	0	0	0	0	0	0	10569	783	27	3		3	NLRP12	19	54318296	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	328303	54318296	4810687	540	36063											
VSTM1	284415	broad.mit.edu	37	chr19	54544178	54544178	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgataaccttggccagcacGatcccccctcctttagtggc	8	17	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54544178	T	T	54544178	1	4	18	0	1	0	0	0	0	0	0	0	17355	1073	37	3		3	VSTM1	19	54544178	3'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	225882	54544178	4584805	541	36064											
LILRB1	10859	broad.mit.edu	37	chr19	55142908	55142908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctggaatctgctgggttGggtgggaaatgagttagaat	17	3	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55142908	T	T	55142908	1	4	18	0	1	0	0	0	0	0	0	0	8862	1363	47	2		2	LILRB1	19	55142908	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	598730	55142908	3986075	542	36065											
KIR3DL1	3811	broad.mit.edu	37	chr19	55340905	55340905	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttctccttcatctctggTgctccaacaaaaaaagtaag	5	11	4	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55340905	A	A	55340905	3	1	18	1	0	0	0	0	1	0	0	0	8391	1696	59	5	1116	5	KIR3DL1	19	55340905	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	197997	55340905	3788078	543	36066											
NLRP9	338321	broad.mit.edu	37	chr19	56223080	56223080	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaccctccagcctggcAtccatcatgtcgcggttgag	9	14	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56223080	G	G	56223080	1	3	18	0	1	0	0	0	0	0	0	0	10579	232	8	5		5	NLRP9	19	56223080	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08	882175	56223080	2905903	544	36067											
NLRP8	126205	broad.mit.edu	37	chr19	56459698	56459698	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgggcagctaaactactcTagtcaccacccctatcactt	6	15	3	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56459698	G	G	56459698	1	3	18	0	1	0	0	0	0	0	0	0	10578	1537	53	5		5	NLRP8	19	56459698	Intron	SNP	T	TCGA-05-4418-01A-01D-1265-08	236618	56459698	2669285	545	36068											
ZNF135	7694	broad.mit.edu	37	chr19	58579319	58579319	+	Silent	SNP	A	G	G													caacaccagcgaatccacacAggggagaagccctatgaatg							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58579319	G	G	58579319	2	3	18	1	0	0	0	0	0	0	0	1	17851	175	7	5		5	ZNF135	19	58579319	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08	2119621	58579319	549664	546	36069	204	2									
ZNF135	7694	broad.mit.edu	37	chr19	58579321	58579321	+	Missense_Mutation	SNP	G	T	T													acaccagcgaatccacacagGggagaagccctatgaatgca							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58579321	T	T	58579321	3	4	18	1	0	0	0	0	1	0	0	0	17851	1232	43	2	1672	2	ZNF135	19	58579321	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	2	58579321	549662	547	36070	204	2									
C20orf46	55321	broad.mit.edu	37	chr20	1161882	1161882	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcccactcaccaggaaaacGagggcggaaacaaagccata	9	12	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1161882	A	A	1161882	2	1	18	1	0	0	0	0	0	0	0	1	2135	1045	37	4		4	C20orf46	20	1161882	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08		1161882	61863638	548	36071											
VPS16	64601	broad.mit.edu	37	chr20	2846896	2846898	+	Nonsense_Mutation	TNP	CGA	ATT	ATT													atgaaacaacataacaaataCgaagccaagaagtatgcttc					rs141400236	byFrequency	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATT	2846898	ATT	ATT	2846896	4	1	18	1	0	0	0	0	0	1	0	0	17320	547	19	3	2400	3	VPS16	20	2846896	Nonsense_Mutation	TNP	CGA	TCGA-05-4418-01A-01D-1265-08	1685014	2846896	60178624	549	36072											
PLCB1	23236	broad.mit.edu	37	chr20	8639399	8639399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctcttgtttctgattggGggtagtcacacgctgggagt	14	7	3	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8639399	T	T	8639399	1	4	18	0	1	0	0	0	0	0	0	0	12122	1247	43	2		2	PLCB1	20	8639399	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	5792503	8639399	54386121	550	36073											
CST9	128822	broad.mit.edu	37	chr20	23586393	23586393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggactattttattattacCacccatttcctcttcagaac	3	12	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23586393	A	A	23586393	3	1	18	1	0	0	0	0	1	0	0	0	4013	594	21	2	378	2	CST9	20	23586393	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	14946994	23586393	39439127	551	36074											
POFUT1	23509	broad.mit.edu	37	chr20	30818946	30818946	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccactgcccactgcatgcttCacgggctcccctacaagcct	7	19	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30818946	G	G	30818946	1	3	18	0	1	0	0	0	0	0	0	0	12278	841	29	4		4	POFUT1	20	30818946	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	7232553	30818946	32206574	552	36075											
SUN5	140732	broad.mit.edu	37	chr20	31587901	31587901	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcacagaggagcagaaTgcctgtcttctccatgagct	11	10	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31587901	C	C	31587901	3	2	18	1	0	0	0	0	1	0	0	0	15512	1464	51	5	856	5	SUN5	20	31587901	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	768955	31587901	31437619	553	36076											
GGT7	2686	broad.mit.edu	37	chr20	33448251	33448251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacacaggccaagtatccCaggggagggacaagctttcc	13	11	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33448251	A	A	33448251	1	1	18	0	1	0	0	0	0	0	0	0	6428	609	21	2		2	GGT7	20	33448251	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	1860350	33448251	29577269	554	36077											
CHD6	84181	broad.mit.edu	37	chr20	40192537	40192537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataatcttatgggggaagaCaaagggttttacaaacaaca	9	6	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40192537	A	A	40192537	1	1	18	0	1	0	0	0	0	0	0	0	3360	493	17	3		3	CHD6	20	40192537	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	6744286	40192537	22832983	555	36078											
PHACTR3	116154	broad.mit.edu	37	chr20	58322818	58322818	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgtgtgttgggcagcgctgGagaagaagatggccggcagg	19	6	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58322818	C	C	58322818	3	2	18	1	0	0	0	0	1	0	0	0	11906	1175	41	4	296	4	PHACTR3	20	58322818	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	18130281	58322818	4702702	556	36079											
DIDO1	11083	broad.mit.edu	37	chr20	61538454	61538454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcgacaaacgctctcaCgcctgtgcgtccactgcctg	9	16	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61538454	A	A	61538454	1	1	18	0	1	0	0	0	0	0	0	0	4562	551	19	3		3	DIDO1	20	61538454	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	3215636	61538454	1487066	557	36080											
DIDO1	11083	broad.mit.edu	37	chr20	61542643	61542643	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgccctcggaggctgtctCggcgtctgtggcggggcagg	19	12	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61542643	A	A	61542643	4	1	18	1	0	0	0	0	0	1	0	0	4562	893	31	3	6586	3	DIDO1	20	61542643	Nonsense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	4189	61542643	1482877	558	36081											
KCNQ2	3785	broad.mit.edu	37	chr20	62038665	62038665	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcggtctctgtcggggGgatgcccatccgctgcatgt	15	13	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62038665	A	A	62038665	3	1	18	1	0	0	0	0	1	0	0	0	8153	1232	43	4	671	4	KCNQ2	20	62038665	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	496022	62038665	986855	559	36082											
SAMSN1	64092	broad.mit.edu	37	chr21	15870655	15870655	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacctattttatgggaaagcGtgctttcatgatctcagtaa	8	7	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15870655	C	C	15870655	1	2	18	0	1	0	0	0	0	0	0	0	13941	1160	40	4		4	SAMSN1	21	15870655	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08		15870655	32259240	560	36083											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296423	28296423	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaggcctttgggagagAggacatccttttgctaactt	12	8	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28296423	T	T	28296423	2	4	18	1	0	0	0	0	0	0	0	1	269	291	11	5		5	ADAMTS5	21	28296423	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08	12425768	28296423	19833472	561	36084											
KRTAP6-2	337967	broad.mit.edu	37	chr21	31973402	31973402	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttaaaactctagaatctGatcctgctatacaactgagc	5	10	2	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31973402	T	T	31973402	1	4	18	0	1	0	0	0	0	0	0	0	8642	1305	45	3		3	KRTAP6-2	21	31973402	5'Flank	SNP	G	TCGA-05-4418-01A-01D-1265-08	3676979	31973402	16156493	562	36085											
RIPK4	54101	broad.mit.edu	37	chr21	43161537	43161537	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcggccaggtgcaatggcgTcctcccatccagcgtctggg	14	14	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43161537	C	C	43161537	3	2	18	1	0	0	0	0	1	0	0	0	13494	1667	58	5	542	5	RIPK4	21	43161537	Missense_Mutation	SNP	T	TCGA-05-4418-01A-01D-1265-08	11188135	43161537	4968358	563	36086											
MEI1	150365	broad.mit.edu	37	chr22	42150063	42150063	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagaaggtaagatgctacAatttgaccactcatgtggcc	9	9	1	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42150063	T	T	42150063	1	4	18	0	1	0	0	0	0	0	0	0	9558	145	5	5		5	MEI1	22	42150063	Intron	SNP	A	TCGA-05-4418-01A-01D-1265-08		42150063	9154503	564	36087											
WBP2NL	164684	broad.mit.edu	37	chr22	42343203	42343203	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggcggggcttcgcgggacGggacggggcctcttaaagga	19	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42343203	C	C	42343203	1	2	18	0	1	0	0	0	0	0	0	0	17387	1131	39	4		4	WBP2NL	22	42343203	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	193140	42343203	8961363	565	36088											
GRAMD4	23151	broad.mit.edu	37	chr22	47058939	47058939	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccctgccccctgcagagCgccggagccaggggctgtcc	15	17	0	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47058939	T	T	47058939	3	4	18	1	0	0	0	0	1	0	0	0	6818	768	27	4	487	4	GRAMD4	22	47058939	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	4715736	47058939	4245627	566	36089											
CRLF2	64109	broad.mit.edu	37	chrX	1321261	1321261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgccctgagtcgcggccGcccggctcacctgccactcg	11	20	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1321261	T	T	1321261	1	4	18	0	1	0	0	0	0	0	0	0	3919	1102	38	3		3	CRLF2	23	1321261	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08		1321261	153949299	567	36090											
SHROOM2	357	broad.mit.edu	37	chrX	9862711	9862711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccggcaggcccaggccGcaggcgaccctcagggctcg	17	16	1	0	rs111899727	byFrequency	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9862711	T	T	9862711	3	4	18	1	0	0	0	0	1	0	0	0	14407	1087	38	3	777	3	SHROOM2	23	9862711	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	8541450	9862711	145407849	568	36091											
ARHGAP6	395	broad.mit.edu	37	chrX	11162223	11162223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccggggccgcgtcctcttGcatagccagcagggagcgct	14	16	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11162223	T	T	11162223	3	4	18	1	0	0	0	0	1	0	0	0	889	1328	46	3	1005	3	ARHGAP6	23	11162223	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	1299512	11162223	144108337	569	36092											
ARHGAP6	395	broad.mit.edu	37	chrX	11308583	11308583	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttgtgcctaagatctgaaGatcatacaactccaactcta	5	10	3	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11308583	A	A	11308583	1	1	18	0	1	0	0	0	0	0	0	0	889	957	33	4		4	ARHGAP6	23	11308583	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	146360	11308583	143961977	570	36093											
GLRA2	2742	broad.mit.edu	37	chrX	14550471	14550471	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggacatcaggatatgatgCaagaatcaggccaaatttta	9	6	2	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14550471	G	G	14550471	3	3	18	1	0	0	0	0	1	0	0	0	6519	710	25	4	185	4	GLRA2	23	14550471	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	3241888	14550471	140720089	571	36094											
SH3KBP1	30011	broad.mit.edu	37	chrX	19650023	19650023	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctccttctttgattgtcaAttcatcatcattctgtgcct	4	11	7	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19650023	G	G	19650023	2	3	18	1	0	0	0	0	0	0	0	1	14368	98	4	5		5	SH3KBP1	23	19650023	Silent	SNP	A	TCGA-05-4418-01A-01D-1265-08	5099552	19650023	135620537	572	36095											
DMD	1756	broad.mit.edu	37	chrX	31241077	31241077	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtgacagctgtttctccCctctctaagtaaaaatgtac	6	10	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31241077	G	G	31241077	1	3	18	0	1	0	0	0	0	0	0	0	4620	638	22	4		4	DMD	23	31241077	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	11591054	31241077	124029483	573	36096											
MAGEB16	139604	broad.mit.edu	37	chrX	35820818	35820818	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagagatgatatttggccttGatgtggtggaggtggacccc	15	6	0	3			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35820818	T	T	35820818	3	4	18	1	0	0	0	0	1	0	0	0	9266	1290	45	3	507	3	MAGEB16	23	35820818	Missense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	4579741	35820818	119449742	574	36097											
RBM10	8241	broad.mit.edu	37	chrX	47041247	47041247	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaccagccccactgcccagGaatcctacagccagtaccgt	7	18	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47041247	T	T	47041247	4	4	18	1	0	0	0	0	0	1	0	0	13219	1175	41	3	1729	3	RBM10	23	47041247	Nonsense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	11220429	47041247	108229313	575	36098											
RBM10	8241	broad.mit.edu	37	chrX	47046078	47046078	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgttggatggctgggacGgggccttgctcttgtcggcc	18	9	1	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47046078	T	T	47046078	1	4	18	0	1	0	0	0	0	0	0	0	13219	1131	39	1		1	RBM10	23	47046078	3'UTR	SNP	G	TCGA-05-4418-01A-01D-1265-08	4831	47046078	108224482	576	36099											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	18	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-05-4418-01A-01D-1265-08	6606769	53652847	101617713	577	36100											
EDA	1896	broad.mit.edu	37	chrX	69250452	69250452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaataatcacccagcctaGttcctcccaggccgctgagg	8	16	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69250452	T	T	69250452	1	4	18	0	1	0	0	0	0	0	0	0	4943	1044	36	3		3	EDA	23	69250452	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	15597605	69250452	86020108	578	36101											
GDPD2	54857	broad.mit.edu	37	chrX	69649975	69649975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatggcagggaagaaccaGttcagggagagcaaagcctc	13	8	1	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69649975	T	T	69649975	1	4	18	0	1	0	0	0	0	0	0	0	6388	1044	36	3		3	GDPD2	23	69649975	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	399523	69649975	85620585	579	36102											
NAP1L2	4674	broad.mit.edu	37	chrX	72434120	72434120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttttttcccatcttccCcggacccagcagcagtatct	5	17	2	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72434120	A	A	72434120	3	1	18	1	0	0	0	0	1	0	0	0	10251	623	22	2	1177	2	NAP1L2	23	72434120	Missense_Mutation	SNP	C	TCGA-05-4418-01A-01D-1265-08	2784145	72434120	82836440	580	36103											
TAF7L	54457	broad.mit.edu	37	chrX	100531263	100531263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttagcactgccacccaccCtggtcccatccctttgtttt	6	16	0	0			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100531263	A	A	100531263	1	1	18	0	1	0	0	0	0	0	0	0	15652	696	24	2		2	TAF7L	23	100531263	Intron	SNP	C	TCGA-05-4418-01A-01D-1265-08	28097143	100531263	54739297	581	36104											
TRPC5	7224	broad.mit.edu	37	chrX	111090328	111090328	+	Intron	DEL	G	-	-													aaataaataaataaaggaaaGgggatcgtcttacgtggaga							TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111090328	-	-	111090328	6	5	18	0	1	1	0	1	0	0	0	0	16707	1015	35	0		0	TRPC5	23	111090328	Intron	DEL	G	TCGA-05-4418-01A-01D-1265-08	10559065	111090328	44180232	582	36105											
TRPC5	7224	broad.mit.edu	37	chrX	111195133	111195133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtagggtagctccaggatGctacctgagatcactggtgc	13	10	1	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111195133	T	T	111195133	1	4	18	0	1	0	0	0	0	0	0	0	16707	1334	46	3		3	TRPC5	23	111195133	Intron	SNP	G	TCGA-05-4418-01A-01D-1265-08	104805	111195133	44075427	583	36106											
HTATSF1	27336	broad.mit.edu	37	chrX	135592243	135592243	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttcttatctttctagagGcacccagatggtgtggcctc	9	11	4	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135592243	A	A	135592243	2	1	18	1	0	0	0	0	0	0	0	1	7503	1194	42	4		4	HTATSF1	23	135592243	Silent	SNP	G	TCGA-05-4418-01A-01D-1265-08	24397110	135592243	19678317	584	36107											
AFF2	2334	broad.mit.edu	37	chrX	148037652	148037652	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaacatccctttggctcccGagaagaagaagtacagaggg	11	10	0	4			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148037652	T	T	148037652	4	4	18	1	0	0	0	0	0	1	0	0	357	1059	37	3	2174	3	AFF2	23	148037652	Nonsense_Mutation	SNP	G	TCGA-05-4418-01A-01D-1265-08	12445409	148037652	7232908	585	36108											
TREX2	11219	broad.mit.edu	37	chrX	152710691	152710691	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcagtgaaggggcgctcCgggcacatgcacagcgtgag	17	10	0	2			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152710691	A	A	152710691	2	1	18	1	0	0	0	0	0	0	0	1	16601	639	23	1		1	TREX2	23	152710691	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	4673039	152710691	2559869	586	36109											
ATP2B3	492	broad.mit.edu	37	chrX	152826288	152826288	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagaggaacgtgttcgaCggcatcttcagcaaccccat	12	12	2	1			TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152826288	T	T	152826288	2	4	18	1	0	0	0	0	0	0	0	1	1145	535	19	4		4	ATP2B3	23	152826288	Silent	SNP	C	TCGA-05-4418-01A-01D-1265-08	115597	152826288	2444272	587	36110											
HES4	57801	broad.mit.edu	37	chr1	935138	935138	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcgttaatacgcgctcgGcgccgcttctccatgaccgg	10	16	2	1	rs140166926	byFrequency	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	935138	C	C	935138	2	2	19	1	0	0	0	0	0	0	0	1	7135	1190	42	4		4	HES4	1	935138	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08		935138	248315483	1	36111											
LRRC47	57470	broad.mit.edu	37	chr1	3712374	3712374	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccgagaggggttccttctCcagggctactccaaggcccc	11	17	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3712374	A	A	3712374	1	1	19	0	1	0	0	0	0	0	0	0	9091	870	30	3		3	LRRC47	1	3712374	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2777236	3712374	245538247	2	36112											
AJAP1	55966	broad.mit.edu	37	chr1	4832175	4832175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaaaaaagagttgattgCttgattgtggttgatctttc	9	3	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4832175	A	A	4832175	1	1	19	0	1	0	0	0	0	0	0	0	438	812	28	3		3	AJAP1	1	4832175	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1119801	4832175	244418446	3	36113											
CAMTA1	23261	broad.mit.edu	37	chr1	7811208	7811208	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagctcgaaggacgctgagCccgtgcagcccctgttgtta	12	12	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7811208	T	T	7811208	1	4	19	0	1	0	0	0	0	0	0	0	2639	754	26	4		4	CAMTA1	1	7811208	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2979033	7811208	241439413	4	36114											
TMEM201	199953	broad.mit.edu	37	chr1	9658630	9658630	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaccgccagctgcgcgccCtgttgctcagccaccagttc	10	17	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9658630	T	T	9658630	2	4	19	1	0	0	0	0	0	0	0	1	16249	680	24	4		4	TMEM201	1	9658630	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1847422	9658630	239591991	5	36115											
PEX14	5195	broad.mit.edu	37	chr1	10690005	10690005	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaggtggagaagctgcgGcggcccgagggcgccagcaa	19	11	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10690005	A	A	10690005	2	1	19	1	0	0	0	0	0	0	0	1	11837	1190	42	4		4	PEX14	1	10690005	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1031375	10690005	238560616	6	36116											
PRAMEF12	390999	broad.mit.edu	37	chr1	12836257	12836257	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccacctggaccagctgCtcaggtgaggaagtatggtg	15	9	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12836257	T	T	12836257	3	4	19	1	0	0	0	0	1	0	0	0	12529	797	28	4	865	4	PRAMEF12	1	12836257	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2146252	12836257	236414364	7	36117											
PRAMEF4	400735	broad.mit.edu	37	chr1	12939691	12939691	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagggcaggcaagatggCgttgacttgggagtctatga	16	7	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12939691	T	T	12939691	3	4	19	1	0	0	0	0	1	0	0	0	12541	768	27	4	329	4	PRAMEF4	1	12939691	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	103434	12939691	236310930	8	36118											
DDI2	84301	broad.mit.edu	37	chr1	15960224	15960224	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctcctctttcattttctAtgcatttcgatttgacatga	4	10	4	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15960224	C	C	15960224	1	2	19	0	1	0	0	0	0	0	0	0	4362	464	16	5		5	DDI2	1	15960224	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	3020533	15960224	233290397	9	36119											
EPHA2	1969	broad.mit.edu	37	chr1	16464843	16464843	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactcgcaggaggtggcaccCtcaggggatggcagcgtgtg	17	11	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16464843	T	T	16464843	2	4	19	1	0	0	0	0	0	0	0	1	5209	680	24	4		4	EPHA2	1	16464843	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	504619	16464843	232785778	10	36120											
ARHGEF19	128272	broad.mit.edu	37	chr1	16532021	16532021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctcactgtggcctgtcCcctcgaggtacctccaccaa	8	18	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16532021	A	A	16532021	1	1	19	0	1	0	0	0	0	0	0	0	904	638	22	2		2	ARHGEF19	1	16532021	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	67178	16532021	232718600	11	36121											
HP1BP3	50809	broad.mit.edu	37	chr1	21071463	21071463	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggccttaggaggtgcttTcttaggcaagggcctagctt	13	8	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21071463	A	A	21071463	4	1	19	1	0	0	0	0	0	1	0	0	7395	1792	62	5	176	5	HP1BP3	1	21071463	Nonsense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	4539442	21071463	228179158	12	36122											
CNKSR1	10256	broad.mit.edu	37	chr1	26510756	26510756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttcaaaccccagtccCggacccagccctgcctggac	8	19	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26510756	A	A	26510756	2	1	19	1	0	0	0	0	0	0	0	1	3638	639	23	1		1	CNKSR1	1	26510756	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	5439293	26510756	222739865	13	36123											
PTPRU	10076	broad.mit.edu	37	chr1	29601961	29601961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcctgcattctccagaGcccatgagggcccccaaagg	10	15	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29601961	T	T	29601961	3	4	19	1	0	0	0	0	1	0	0	0	12921	985	34	3	1176	3	PTPRU	1	29601961	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	3091205	29601961	219648660	14	36124											
PTPRU	10076	broad.mit.edu	37	chr1	29642689	29642690	+	Intron	DEL	GT	-	-													ggatgagtgcgtgtgtatagGtgtgtgtgtgtgtgtctgtg							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29642690	-	-	29642689	6	5	19	0	1	1	0	1	0	0	0	0	12921	1276	44	0		0	PTPRU	1	29642689	Intron	DEL	GT	TCGA-05-4420-01A-01D-1265-08	40728	29642689	219607932	15	36125											
TMEM39B	55116	broad.mit.edu	37	chr1	32557579	32557579	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccatgctgagcgcctaCtatgtggcctttgtgcctgt	11	12	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32557579	A	A	32557579	4	1	19	1	0	0	0	0	0	1	0	0	16285	576	20	3	916	3	TMEM39B	1	32557579	Nonsense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2914890	32557579	216693042	16	36126											
LCK	3932	broad.mit.edu	37	chr1	32741968	32741969	+	Frame_Shift_Ins	INS	-	A	A													gggctgtgcacacggttgagINSccgcccctgccagacccaga							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32741969	A	A	32741968	7	5	19	1	0	1	1	0	0	0	0	0	8748	971	34	0	688	0	LCK	1	32741968	Frame_Shift_Ins	INS	-	TCGA-05-4420-01A-01D-1265-08	184389	32741968	216508653	17	36127											
CSMD2	114784	broad.mit.edu	37	chr1	33985220	33985220	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgggttctcaaatgtggcCcgaacattggtgttctcgtg	12	8	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33985220	A	A	33985220	2	1	19	1	0	0	0	0	0	0	0	1	3979	610	22	2		2	CSMD2	1	33985220	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1243252	33985220	215265401	18	36128											
DLGAP3	58512	broad.mit.edu	37	chr1	35365726	35365726	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaagcgtcgggcgactGctttgggagatgtcttgggg	19	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35365726	A	A	35365726	3	1	19	1	0	0	0	0	1	0	0	0	4601	1319	46	4	1719	4	DLGAP3	1	35365726	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1380506	35365726	213884895	19	36129											
SFPQ	6421	broad.mit.edu	37	chr1	35656881	35656881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccaagccttcagcgtttgTagtgacaaaaaaatccccca	6	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35656881	C	C	35656881	1	2	19	0	1	0	0	0	0	0	0	0	14273	1653	57	5		5	SFPQ	1	35656881	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	291155	35656881	213593740	20	36130											
SNIP1	79753	broad.mit.edu	37	chr1	38005680	38005680	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggattcttctgcataaaCatgaacaaaaatcttagtaa	6	6	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38005680	T	T	38005680	1	4	19	0	1	0	0	0	0	0	0	0	14962	493	17	4		4	SNIP1	1	38005680	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2348799	38005680	211244941	21	36131											
KIAA0754	643314	broad.mit.edu	37	chr1	39878353	39878353	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagagattcagattcattcCtaaatatttttccagagaaa	7	6	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39878353	G	G	39878353	3	3	19	1	0	0	0	0	1	0	0	0	8262	680	24	4	2418	4	KIAA0754	1	39878353	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1872673	39878353	209372268	22	36132											
NT5C1A	84618	broad.mit.edu	37	chr1	40137419	40137419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagagcagagctcccaaaaTaaacccgagcccgcgccagc	9	17	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40137419	C	C	40137419	1	2	19	0	1	0	0	0	0	0	0	0	10780	1421	49	5		5	NT5C1A	1	40137419	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	259066	40137419	209113202	23	36133											
RLF	6018	broad.mit.edu	37	chr1	40627278	40627278	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagaggtgtcggaggtctcAtctttgaactactgccggag	13	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40627278	T	T	40627278	2	4	19	1	0	0	0	0	0	0	0	1	13500	204	8	5		5	RLF	1	40627278	Silent	SNP	A	TCGA-05-4420-01A-01D-1265-08	489859	40627278	208623343	24	36134											
NFYC	4802	broad.mit.edu	37	chr1	41236556	41236556	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatttttgccatacagccccAggcaatgggcacagccttcc	8	14	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41236556	T	T	41236556	1	4	19	0	1	0	0	0	0	0	0	0	10486	203	7	5		5	NFYC	1	41236556	3'UTR	SNP	A	TCGA-05-4420-01A-01D-1265-08	609278	41236556	208014065	25	36135											
GUCA2B	2981	broad.mit.edu	37	chr1	42619102	42619102	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacggtggacagcggcaGggggaacccagggagcgcga	21	9	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42619102	T	T	42619102	1	4	19	1	0	0	0	0	0	0	0	0	6957	1015	35	2		2	GUCA2B	1	42619102	Translation_Start_Site	SNP	G	TCGA-05-4420-01A-01D-1265-08	1382546	42619102	206631519	26	36136											
PTPRF	5792	broad.mit.edu	37	chr1	44072344	44072344	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggctccagggacccagtCctgccaggtccaccttgtag	12	14	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44072344	T	T	44072344	1	4	19	0	1	0	0	0	0	0	0	0	12909	870	30	4		4	PTPRF	1	44072344	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1453242	44072344	205178277	27	36137											
CYP4B1	1580	broad.mit.edu	37	chr1	47282729	47282730	+	Missense_Mutation	DNP	GG	TT	TT													gttgctggcagggatgatctGggcaaaatgacttatctgac							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	47282730	TT	TT	47282729	3	4	19	1	0	0	0	0	1	0	0	0	4218	1335	47	2	1117	2	CYP4B1	1	47282729	Missense_Mutation	DNP	GG	TCGA-05-4420-01A-01D-1265-08	3210385	47282729	201967892	28	36138											
AGBL4	84871	broad.mit.edu	37	chr1	50312005	50312005	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaagccatatgcatgcaGggactatggaaagaccttta	11	7	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50312005	A	A	50312005	1	1	19	0	1	0	0	0	0	0	0	0	377	1015	35	4		4	AGBL4	1	50312005	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3029276	50312005	198938616	29	36139											
C1orf175	374977	broad.mit.edu	37	chr1	55119167	55119167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagaaggtctggttctgGgccactgcatctctaggcca	12	12	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55119167	T	T	55119167	3	4	19	1	0	0	0	0	1	0	0	0	2036	1232	43	2	570	2	C1orf175	1	55119167	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	4807162	55119167	194131454	30	36140											
DAB1	1600	broad.mit.edu	37	chr1	57489264	57489264	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacatctgcactcgctggaaGggtctgagatgaagatggga	14	8	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57489264	C	C	57489264	3	2	19	1	0	0	0	0	1	0	0	0	4250	1000	35	4	848	4	DAB1	1	57489264	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2370097	57489264	191761357	31	36141											
MIER1	57708	broad.mit.edu	37	chr1	67442326	67442326	+	Frame_Shift_Del	DEL	A	-	-													tagcattctattacatgtggAaaaaatctgaacgttatgat							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67442326	-	-	67442326	7	5	19	1	0	1	0	1	0	0	0	0	9673	247	9	0	1273	0	MIER1	1	67442326	Frame_Shift_Del	DEL	A	TCGA-05-4420-01A-01D-1265-08	9953062	67442326	181808295	32	36142											
FAM73A	374986	broad.mit.edu	37	chr1	78340618	78340618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttagctgaagacctcatgCagttactcattcgccgcact	7	13	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78340618	A	A	78340618	3	1	19	1	0	0	0	0	1	0	0	0	5668	711	25	3	1830	3	FAM73A	1	78340618	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	10898292	78340618	170910003	33	36143											
LPHN2	23266	broad.mit.edu	37	chr1	82445498	82445498	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgatacatttgcaagaactAttcatttttcagctctttgt	5	8	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82445498	G	G	82445498	1	3	19	0	1	0	0	0	0	0	0	0	9003	464	16	5		5	LPHN2	1	82445498	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	4104880	82445498	166805123	34	36144											
GBP4	115361	broad.mit.edu	37	chr1	89662923	89662923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttgaattcactgtcagCtgctcttcctggttttccac	7	13	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89662923	A	A	89662923	3	1	19	1	0	0	0	0	1	0	0	0	6338	796	28	3	1857	3	GBP4	1	89662923	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7217425	89662923	159587698	35	36145											
GBP5	115362	broad.mit.edu	37	chr1	89735060	89735060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accactcacccttgttcttcCcagccagcttgttcatcagg	6	16	4	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89735060	A	A	89735060	3	1	19	1	0	0	0	0	1	0	0	0	6339	623	22	2	1621	2	GBP5	1	89735060	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	72137	89735060	159515561	36	36146											
EVI5	7813	broad.mit.edu	37	chr1	93070821	93070821	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcagacaaagaggatagaaGaaactatatttttacatgta	7	4	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93070821	A	A	93070821	1	1	19	0	1	0	0	0	0	0	0	0	5331	957	33	4		4	EVI5	1	93070821	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3335761	93070821	156179800	37	36147											
AMPD2	271	broad.mit.edu	37	chr1	110172892	110172892	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtactacctggcccagaTcggcatcgccatgtctccgc	9	17	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110172892	A	A	110172892	3	1	19	1	0	0	0	0	1	0	0	0	586	1435	50	5	2286	5	AMPD2	1	110172892	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	17102071	110172892	139077729	38	36148											
KCNA10	3744	broad.mit.edu	37	chr1	111060705	111060705	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaactctggcagtgtctcCaggcagaagatggtgatgga	15	8	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111060705	T	T	111060705	2	4	19	1	0	0	0	0	0	0	0	1	8072	581	21	4		4	KCNA10	1	111060705	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	887813	111060705	138189916	39	36149											
MAGI3	260425	broad.mit.edu	37	chr1	114128317	114128317	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttacaaagcatatggagAgcaagtgatgggattttaat	10	3	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114128317	T	T	114128317	1	4	19	0	1	0	0	0	0	0	0	0	9284	319	11	5		5	MAGI3	1	114128317	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	3067612	114128317	135122304	40	36150											
DENND2C	163259	broad.mit.edu	37	chr1	115130323	115130323	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatagagagggagaactttAtaatgaaactgacctttaac	8	5	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115130323	G	G	115130323	1	3	19	0	1	0	0	0	0	0	0	0	4470	464	16	5		5	DENND2C	1	115130323	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	1002006	115130323	134120298	41	36151											
NGF	4803	broad.mit.edu	37	chr1	115829306	115829306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggaatgctgaagtttagtCcagtgggcttgggggatggt	18	4	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115829306	A	A	115829306	3	1	19	1	0	0	0	0	1	0	0	0	10490	856	30	3	618	3	NGF	1	115829306	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	698983	115829306	133421315	42	36152											
SPAG17	200162	broad.mit.edu	37	chr1	118527328	118527328	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagactgatataactggttcAattcagatttaaaaaagggt	9	4	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118527328	C	C	118527328	3	2	19	1	0	0	0	0	1	0	0	0	15095	131	5	5	956	5	SPAG17	1	118527328	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	2698022	118527328	130723293	43	36153											
SPAG17	200162	broad.mit.edu	37	chr1	118609425	118609425	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcacaatgcaaacgttgtCtattcattggattgtgaaag	8	6	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118609425	T	T	118609425	3	4	19	1	0	0	0	0	1	0	0	0	15095	913	32	4	4312	4	SPAG17	1	118609425	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	82097	118609425	130641196	44	36154											
WARS2	10352	broad.mit.edu	37	chr1	119576065	119576065	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtacacacagacagttccCaacttgcaatggtttgaatt	7	9	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119576065	G	G	119576065	1	3	19	0	1	0	0	0	0	0	0	0	17377	609	21	4		4	WARS2	1	119576065	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	966640	119576065	129674556	45	36155											
NOTCH2	4853	broad.mit.edu	37	chr1	120464237	120464237	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagacatcaagactatcacTctttactcccattcaggaca	4	12	4	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120464237	A	A	120464237	1	1	19	0	1	0	0	0	0	0	0	0	10643	1566	54	5		5	NOTCH2	1	120464237	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	888172	120464237	128786384	46	36156											
FLG	2312	broad.mit.edu	37	chr1	152275261	152275286	+	Frame_Shift_Del	DEL	TTATTAATATACGTTGCATAATACCT	-	-													ggccacataaacctgggtccTtattaatatacgttgcataa					rs117440780	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152275286	-	-	152275261	7	5	19	1	0	1	0	1	0	0	0	0	5979	1609	56	0	88	0	FLG	1	152275261	Frame_Shift_Del	DEL	TTATTAATATACGTTGCATAATACCT	TCGA-05-4420-01A-01D-1265-08	31811024	152275261	96975360	47	36157											
FLG	2312	broad.mit.edu	37	chr1	152279843	152279843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacttctggatcctgagtGcccatgggaggcatcagacc	12	12	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279843	T	T	152279843	3	4	19	1	0	0	0	0	1	0	0	0	5979	1319	46	3	4670	3	FLG	1	152279843	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	4582	152279843	96970778	48	36158											
FLG	2312	broad.mit.edu	37	chr1	152282747	152282747	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtttgcctgcttgcacTtctgggtcctgactgcccat	9	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152282747	G	G	152282747	3	3	19	1	0	0	0	0	1	0	0	0	5979	1609	56	5	7574	5	FLG	1	152282747	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	2904	152282747	96967874	49	36159											
S100A8	6279	broad.mit.edu	37	chr1	153363208	153363208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggatgatagggatacaCgtgtgggaaggggaagggtc	21	3	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153363208	A	A	153363208	1	1	19	0	1	0	0	0	0	0	0	0	13897	551	19	3		3	S100A8	1	153363208	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1080461	153363208	95887413	50	36160											
SLC39A1	27173	broad.mit.edu	37	chr1	153934660	153934660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagaggtgtgtgattcCcctcccgcaagtcacatgcc	9	16	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153934660	A	A	153934660	1	1	19	0	1	0	0	0	0	0	0	0	14726	638	22	2		2	SLC39A1	1	153934660	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	571452	153934660	95315961	51	36161											
DCST1	149095	broad.mit.edu	37	chr1	155020758	155020758	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaatggtcgcaggcctactCgagcctggtaagttcttttt	10	11	1	0	rs115837705	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155020758	A	A	155020758	1	1	19	0	1	0	0	0	0	0	0	0	4335	899	31	3		3	DCST1	1	155020758	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1086098	155020758	94229863	52	36162											
SCAMP3	10067	broad.mit.edu	37	chr1	155230304	155230304	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactggcccttctccccagCcctcacctgcacacctcctg	7	21	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155230304	A	A	155230304	1	1	19	0	1	0	0	0	0	0	0	0	13984	754	26	3		3	SCAMP3	1	155230304	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	209546	155230304	94020317	53	36163											
CLK2	1196	broad.mit.edu	37	chr1	155237671	155237672	+	Intron	DNP	AG	TA	TA													cctgatgttctactactctaAgatgatgaacaaaagatgaa							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	155237672	TA	TA	155237671	1	4	19	0	1	0	0	0	0	0	0	0	3569	87	3	5		5	CLK2	1	155237671	Intron	DNP	AG	TCGA-05-4420-01A-01D-1265-08	7367	155237671	94012950	54	36164											
ARHGEF2	9181	broad.mit.edu	37	chr1	155920588	155920588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggacccttatgtccaccCcaggtccattcaccactgca	6	17	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155920588	A	A	155920588	1	1	19	0	1	0	0	0	0	0	0	0	905	638	22	2		2	ARHGEF2	1	155920588	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	682917	155920588	93330033	55	36165											
INSRR	3645	broad.mit.edu	37	chr1	156810764	156810764	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagccccgggccccccgGcattccgggctgtagtagaa	15	14	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156810764	T	T	156810764	4	4	19	1	0	0	0	0	0	1	0	0	7844	1195	42	3	101	3	INSRR	1	156810764	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	890176	156810764	92439857	56	36166											
SPTA1	6708	broad.mit.edu	37	chr1	158596753	158596753	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttttcattcagagcctcTatcttggaagaaatctcttt	6	9	6	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158596753	A	A	158596753	2	1	19	1	0	0	0	0	0	0	0	1	15234	1512	53	5		5	SPTA1	1	158596753	Silent	SNP	T	TCGA-05-4420-01A-01D-1265-08	1785989	158596753	90653868	57	36167											
SPTA1	6708	broad.mit.edu	37	chr1	158647682	158647682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcattacagggcaaacGgtccaacagaactcacagca	9	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158647682	T	T	158647682	1	4	19	0	1	0	0	0	0	0	0	0	15234	1131	39	1		1	SPTA1	1	158647682	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	50929	158647682	90602939	58	36168											
CADM3	57863	broad.mit.edu	37	chr1	159166576	159166576	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccccgataatttctccagcCtcatcaaacagtccttgaca	5	15	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159166576	G	G	159166576	1	3	19	0	1	0	0	0	0	0	0	0	2594	696	24	4		4	CADM3	1	159166576	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	518894	159166576	90084045	59	36169											
OR10J3	441911	broad.mit.edu	37	chr1	159283979	159283980	+	Missense_Mutation	DNP	GG	TT	TT													acagatgttacttggacaatGgccatgccaaggccaatccc							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	159283980	TT	TT	159283979	3	4	19	1	0	0	0	0	1	0	0	0	11005	1335	47	2	520	2	OR10J3	1	159283979	Missense_Mutation	DNP	GG	TCGA-05-4420-01A-01D-1265-08	117403	159283979	89966642	60	36170											
RFWD2	64326	broad.mit.edu	37	chr1	176145170	176145170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggggggaaaaaaaaggCttaattaaatcaatgaaaaa	11	2	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176145170	A	A	176145170	1	1	19	0	1	0	0	0	0	0	0	0	13368	812	28	3		3	RFWD2	1	176145170	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	16861191	176145170	73105451	61	36171											
ASTN1	460	broad.mit.edu	37	chr1	176918355	176918355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgttatacaaggtggggtCgtccgggaagggcgccatct	16	8	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176918355	A	A	176918355	3	1	19	1	0	0	0	0	1	0	0	0	1068	884	31	3	1916	3	ASTN1	1	176918355	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	773185	176918355	72332266	62	36172											
CACNA1E	777	broad.mit.edu	37	chr1	181707463	181707463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgtagtagcctgttggCcacacatggtcatttccttc	8	12	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181707463	A	A	181707463	1	1	19	0	1	0	0	0	0	0	0	0	2568	754	26	3		3	CACNA1E	1	181707463	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	4789108	181707463	67543158	63	36173											
C1orf14	81626	broad.mit.edu	37	chr1	182924621	182924621	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaatcacaccagagtcacCaggacaaggaaagctaggcc	11	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182924621	A	A	182924621	1	1	19	0	1	0	0	0	0	0	0	0	2020	609	21	2		2	C1orf14	1	182924621	5'Flank	SNP	C	TCGA-05-4420-01A-01D-1265-08	1217158	182924621	66326000	64	36174											
KCNT2	343450	broad.mit.edu	37	chr1	196204946	196204946	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttaaacaatcatattttTatattgcacacaacacatga	2	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196204946	C	C	196204946	1	2	19	0	1	0	0	0	0	0	0	0	8162	1769	61	5		5	KCNT2	1	196204946	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	13280325	196204946	53045675	65	36175											
CRB1	23418	broad.mit.edu	37	chr1	197332894	197332894	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatccctgccctttccatGcctggcaacgggtctttgtg	10	15	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197332894	A	A	197332894	1	1	19	0	1	0	0	0	0	0	0	0	3880	1334	46	4		4	CRB1	1	197332894	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1127948	197332894	51917727	66	36176											
CACNA1S	779	broad.mit.edu	37	chr1	201019910	201019910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaagaacttttggcagcCtctctggagtatgaaaaagc	10	7	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201019910	A	A	201019910	1	1	19	0	1	0	0	0	0	0	0	0	2573	696	24	2		2	CACNA1S	1	201019910	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	3687016	201019910	48230711	67	36177											
TMEM183A	92703	broad.mit.edu	37	chr1	202991943	202991943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagctcttggaaaccaagGttgtgtaagttggatactga	13	5	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202991943	A	A	202991943	1	1	19	0	1	0	0	0	0	0	0	0	16225	1276	44	4		4	TMEM183A	1	202991943	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1972033	202991943	46258678	68	36178											
MDM4	4194	broad.mit.edu	37	chr1	204501201	204501201	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagattctgcctttgtatgCcttacagagagacttgggag	11	7	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204501201	T	T	204501201	1	4	19	0	1	0	0	0	0	0	0	0	9507	754	26	4		4	MDM4	1	204501201	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1509258	204501201	44749420	69	36179											
SRGAP2	23380	broad.mit.edu	37	chr1	206619343	206619343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctgcttttgctcttgGcagcgcctcctgtgattgtg	10	12	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206619343	T	T	206619343	1	4	19	0	1	0	0	0	0	0	0	0	15264	1218	42	3		3	SRGAP2	1	206619343	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2118142	206619343	42631278	70	36180											
USH2A	7399	broad.mit.edu	37	chr1	216246128	216246128	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgctctgtcagaagactaCaaaaatattactgcttcagg	7	9	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216246128	G	G	216246128	1	3	19	0	1	0	0	0	0	0	0	0	17162	493	17	4		4	USH2A	1	216246128	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	9626785	216246128	33004493	71	36181											
USH2A	7399	broad.mit.edu	37	chr1	216258244	216258244	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagtttatagatatcaagAaatatatattttgaaagatt	7	1	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216258244	G	G	216258244	1	3	19	0	1	0	0	0	0	0	0	0	17162	261	9	5		5	USH2A	1	216258244	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	12116	216258244	32992377	72	36182											
TMEM63A	9725	broad.mit.edu	37	chr1	226049877	226049878	+	Intron	DEL	GG	-	-													gagttatctggaggggaacaGggagtcagccaagaaggggt							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	226049878	-	-	226049877	6	5	19	0	1	1	0	1	0	0	0	0	16313	1015	35	0		0	TMEM63A	1	226049877	Intron	DEL	GG	TCGA-05-4420-01A-01D-1265-08	9791633	226049877	23200744	73	36183											
GALNT2	2590	broad.mit.edu	37	chr1	230385028	230385028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctataaagtaagtgccaGcatccttcagggtgcccctc	8	15	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230385028	T	T	230385028	1	4	19	0	1	0	0	0	0	0	0	0	6275	986	34	3		3	GALNT2	1	230385028	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	4335151	230385028	18865593	74	36184											
RYR2	6262	broad.mit.edu	37	chr1	237802270	237802270	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catttatttgttcagaacttCcatataatcatatttgttta	3	6	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237802270	T	T	237802270	1	4	19	0	1	0	0	0	0	0	0	0	13880	870	30	4		4	RYR2	1	237802270	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	7417242	237802270	11448351	75	36185											
CHRM3	1131	broad.mit.edu	37	chr1	240072434	240072434	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagatgctgctgctgtgCcagtgtgacaaaaaaaagag	11	7	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240072434	A	A	240072434	4	1	19	1	0	0	0	0	0	1	0	0	3409	747	26	3	1685	3	CHRM3	1	240072434	Nonsense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2270164	240072434	9178187	76	36186											
OR2C3	81472	broad.mit.edu	37	chr1	247695135	247695135	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctgctgacctgatcttcaAcacggcccgggcaatgtggc	11	13	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695135	T	T	247695135	3	4	19	1	0	0	0	0	1	0	0	0	11087	40	2	5	287	5	OR2C3	1	247695135	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	7622701	247695135	1555486	77	36187											
TPO	7173	broad.mit.edu	37	chr2	1497723	1497723	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtctggctgggaggcttaGctgaaaacttcctccccagg	12	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1497723	C	C	1497723	3	2	19	1	0	0	0	0	1	0	0	0	16534	971	34	4	1956	4	TPO	2	1497723	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08		1497723	241701650	78	36188											
PXDN	7837	broad.mit.edu	37	chr2	1652348	1652348	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggccaaacctgaaggcCgcggtggcgaaggcgttgaa	17	9	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1652348	A	A	1652348	2	1	19	1	0	0	0	0	0	0	0	1	12955	639	23	1		1	PXDN	2	1652348	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	154625	1652348	241547025	79	36189											
GREB1	9687	broad.mit.edu	37	chr2	11755152	11755152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgatcagtgctgcctgccGcagtgggaacagcactccac	11	16	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11755152	T	T	11755152	1	4	19	0	1	0	0	0	0	0	0	0	6826	1102	38	3		3	GREB1	2	11755152	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	10102804	11755152	231444221	80	36190											
GREB1	9687	broad.mit.edu	37	chr2	11775662	11775663	+	Intron	DNP	GG	TT	TT													gggcagggccctactgggtgGggtcagtaaaggtttttaat							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	11775663	TT	TT	11775662	1	4	19	0	1	0	0	0	0	0	0	0	6826	1247	43	2		2	GREB1	2	11775662	Intron	DNP	GG	TCGA-05-4420-01A-01D-1265-08	20510	11775662	231423711	81	36191											
LPIN1	23175	broad.mit.edu	37	chr2	11913804	11913805	+	Frame_Shift_Ins	INS	-	TT	TT													tcctgaggaaaacctctcccINStggctgtgatttaccctcag							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	11913805	TT	TT	11913804	7	5	19	1	0	1	1	0	0	0	0	0	9005	680	24	0	669	0	LPIN1	2	11913804	Frame_Shift_Ins	INS	-	TCGA-05-4420-01A-01D-1265-08	138142	11913804	231285569	82	36192											
NBAS	51594	broad.mit.edu	37	chr2	15608700	15608700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaattacagaatccatgaCatcttacaacacattacaac	4	10	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15608700	A	A	15608700	1	1	19	0	1	0	0	0	0	0	0	0	10280	493	17	3		3	NBAS	2	15608700	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	3694896	15608700	227590673	83	36193											
NCOA1	8648	broad.mit.edu	37	chr2	24920627	24920627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcttttttccaacctcaGggcagagaaccatcttatgc	7	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24920627	T	T	24920627	3	4	19	1	0	0	0	0	1	0	0	0	10323	991	35	2	935	2	NCOA1	2	24920627	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	9311927	24920627	218278746	84	36194											
KIF3C	3797	broad.mit.edu	37	chr2	26152411	26152411	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccttctagggactcagCcagtcttgggtgtagcaggg	15	9	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26152411	G	G	26152411	1	3	19	0	1	0	0	0	0	0	0	0	8372	754	26	4		4	KIF3C	2	26152411	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1231784	26152411	217046962	85	36195											
OTOF	9381	broad.mit.edu	37	chr2	26684427	26684427	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgggggcggaaccccgtcgGacacccctggctctgatgga	15	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26684427	T	T	26684427	1	4	19	0	1	0	0	0	0	0	0	0	11397	1189	41	3		3	OTOF	2	26684427	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	532016	26684427	216514946	86	36196											
OTOF	9381	broad.mit.edu	37	chr2	26695370	26695370	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcccagccagcagggggctGaccccacccgccttaccgcg	11	19	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26695370	T	T	26695370	1	4	19	0	1	0	0	0	0	0	0	0	11397	1305	45	3		3	OTOF	2	26695370	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	10943	26695370	216504003	87	36197											
DPYSL5	56896	broad.mit.edu	37	chr2	27165081	27165081	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaaaatatggccctggcCtaccgttggccatcttctcc	8	15	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27165081	T	T	27165081	1	4	19	0	1	0	0	0	0	0	0	0	4790	696	24	4		4	DPYSL5	2	27165081	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	469711	27165081	216034292	88	36198											
GTF3C2	2976	broad.mit.edu	37	chr2	27558976	27558977	+	Intron	DNP	CC	AG	AG													gtaagctccccttgtctcagCccaatccaagcccttccccc							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	27558977	AG	AG	27558976	1	1	19	0	1	0	0	0	0	0	0	0	6938	754	26	3		3	GTF3C2	2	27558976	Intron	DNP	CC	TCGA-05-4420-01A-01D-1265-08	393895	27558976	215640397	89	36199											
GCKR	2646	broad.mit.edu	37	chr2	27745266	27745266	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagtttattcttctcccttGactccattcttagttcctct	3	12	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27745266	T	T	27745266	1	4	19	0	1	0	0	0	0	0	0	0	6356	1305	45	3		3	GCKR	2	27745266	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	186290	27745266	215454107	90	36200											
GALNT14	79623	broad.mit.edu	37	chr2	31360856	31360856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttcaggtcccgtcggcaCctccaacttcctcttggtta	7	16	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31360856	A	A	31360856	3	1	19	1	0	0	0	0	1	0	0	0	6274	507	18	3	1621	3	GALNT14	2	31360856	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	3615590	31360856	211838517	91	36201											
XDH	7498	broad.mit.edu	37	chr2	31588955	31588955	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccggtttgctggaaccccCaacatttttgcaacaaagct	7	12	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31588955	T	T	31588955	2	4	19	1	0	0	0	0	0	0	0	1	17553	593	21	4		4	XDH	2	31588955	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	228099	31588955	211610418	92	36202											
RASGRP3	25780	broad.mit.edu	37	chr2	33745389	33745389	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaattgaaggaagggtttCctctcaactgaaagagaggc	12	6	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33745389	T	T	33745389	1	4	19	0	1	0	0	0	0	0	0	0	13184	870	30	4		4	RASGRP3	2	33745389	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2156434	33745389	209453984	93	36203											
RASGRP3	25780	broad.mit.edu	37	chr2	33745455	33745455	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggagggcagagagaggctCcatgtgatggatggggtttt	18	4	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33745455	T	T	33745455	1	4	19	0	1	0	0	0	0	0	0	0	13184	870	30	4		4	RASGRP3	2	33745455	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	66	33745455	209453918	94	36204											
DHX57	90957	broad.mit.edu	37	chr2	39050219	39050219	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccaaacaacattagtttGccaattctcacatccacggg	6	13	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39050219	T	T	39050219	2	4	19	1	0	0	0	0	0	0	0	1	4553	1306	46	3		3	DHX57	2	39050219	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	5304764	39050219	204149154	95	36205											
SLC8A1	6546	broad.mit.edu	37	chr2	40656143	40656143	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgcggataatggtaagGgccacagtaccacagttctc	10	12	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40656143	T	T	40656143	2	4	19	1	0	0	0	0	0	0	0	1	14820	1219	43	2		2	SLC8A1	2	40656143	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1605924	40656143	202543230	96	36206											
MSH6	2956	broad.mit.edu	37	chr2	48018307	48018307	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtttgtgtgtgtgtgtGtgtgtgtgagagaaacagac	17	2	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48018307	A	A	48018307	1	1	19	0	1	0	0	0	0	0	0	0	9968	1392	48	4		4	MSH6	2	48018307	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	7362164	48018307	195181066	97	36207											
NRXN1	9378	broad.mit.edu	37	chr2	50724853	50724853	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcacctgccatttgacCtaaaagagaagataatatat	6	7	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50724853	A	A	50724853	5	1	19	1	0	0	0	0	0	0	1	0	10760	695	24	2	2329	2	NRXN1	2	50724853	Splice_Site	SNP	C	TCGA-05-4420-01A-01D-1265-08	2706546	50724853	192474520	98	36208											
NRXN1	9378	broad.mit.edu	37	chr2	50765556	50765556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtactttgaacttcagCcatttgccggatatctttgc	8	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50765556	A	A	50765556	3	1	19	1	0	0	0	0	1	0	0	0	10760	739	26	3	2864	3	NRXN1	2	50765556	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	40703	50765556	192433817	99	36209											
USP34	9736	broad.mit.edu	37	chr2	61441859	61441859	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaaaacaaaactgtcagatCcttgtaagatataaaataga	6	5	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61441859	A	A	61441859	1	1	19	0	1	0	0	0	0	0	0	0	17192	870	30	3		3	USP34	2	61441859	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	10676303	61441859	181757514	100	36210											
C2orf86	51057	broad.mit.edu	37	chr2	63816016	63816016	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggagattgcgccacaacCagggcagcgtaaactacagt	11	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63816016	A	A	63816016	1	1	19	0	1	0	0	0	0	0	0	0	2223	609	21	2		2	C2orf86	2	63816016	5'Flank	SNP	C	TCGA-05-4420-01A-01D-1265-08	2374157	63816016	179383357	101	36211											
CEP68	23177	broad.mit.edu	37	chr2	65299464	65299470	+	Frame_Shift_Del	DEL	GAGCGCA	-	-													gcagtagggatgctcgttggGagcgcagagagccagccctg					rs141435576		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65299470	-	-	65299464	7	5	19	1	0	1	0	1	0	0	0	0	3288	1175	41	0	1240	0	CEP68	2	65299464	Frame_Shift_Del	DEL	GAGCGCA	TCGA-05-4420-01A-01D-1265-08	1483448	65299464	177899909	102	36212											
MEIS1	4211	broad.mit.edu	37	chr2	66796217	66796217	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggcatgaatatgggcatgGaggggcagtggcactacatg	17	6	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66796217	A	A	66796217	3	1	19	1	0	0	0	0	1	0	0	0	9560	1175	41	4	1196	4	MEIS1	2	66796217	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1496753	66796217	176403156	103	36213											
DYSF	8291	broad.mit.edu	37	chr2	71797246	71797246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacactgactctggggctctGcccttctgtctgggacttgg	13	12	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71797246	T	T	71797246	1	4	19	0	1	0	0	0	0	0	0	0	4899	1334	46	3		3	DYSF	2	71797246	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	5001029	71797246	171402127	104	36214											
SFXN5	94097	broad.mit.edu	37	chr2	73215340	73215340	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccctgggagcccagcggtcCcccacacccacccacagcac	8	22	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73215340	G	G	73215340	1	3	19	0	1	0	0	0	0	0	0	0	14311	638	22	4		4	SFXN5	2	73215340	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1418094	73215340	169984033	105	36215											
CTNNA2	1496	broad.mit.edu	37	chr2	80772928	80772928	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacaccaagaacccacttatCtgtagaacgtacagggtgca	8	11	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80772928	A	A	80772928	1	1	19	0	1	0	0	0	0	0	0	0	4047	928	32	3		3	CTNNA2	2	80772928	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	7557588	80772928	162426445	106	36216											
THNSL2	55258	broad.mit.edu	37	chr2	88484982	88484982	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actaccattaccagcagataGacaggcagcagcccaggtac	9	13	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88484982	T	T	88484982	3	4	19	1	0	0	0	0	1	0	0	0	15986	942	33	3	1239	3	THNSL2	2	88484982	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	7712054	88484982	154714391	107	36217											
KCNIP3	30818	broad.mit.edu	37	chr2	96041065	96041065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagccatggtcctgggtgGgaaggatcttgtgagtcacc	16	8	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96041065	T	T	96041065	1	4	19	0	1	0	0	0	0	0	0	0	8111	1247	43	2		2	KCNIP3	2	96041065	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	7556083	96041065	147158308	108	36218											
ANKRD36	375248	broad.mit.edu	37	chr2	97851256	97851256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgggacaggtaattttGcaaaacacatttaatgtcat	9	5	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97851256	T	T	97851256	1	4	19	0	1	0	0	0	0	0	0	0	665	1334	46	3		3	ANKRD36	2	97851256	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1810191	97851256	145348117	109	36219											
AFF3	3899	broad.mit.edu	37	chr2	100209812	100209812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctggacaggagggtcaggtCgattttgacccagagagacc	14	10	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100209812	A	A	100209812	3	1	19	1	0	0	0	0	1	0	0	0	358	884	31	3	1413	3	AFF3	2	100209812	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2358556	100209812	142989561	110	36220											
RGPD4	285190	broad.mit.edu	37	chr2	108476072	108476072	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggttttaccagggatttaatCctcatgtgaagatttaattt	8	5	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108476072	T	T	108476072	1	4	19	0	1	0	0	0	0	0	0	0	13396	870	30	4		4	RGPD4	2	108476072	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	8266260	108476072	134723301	111	36221											
SULT1C3	442038	broad.mit.edu	37	chr2	108863862	108863862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatattcaatattttcacGtgaaattattgcataatctg	4	5	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108863862	T	T	108863862	1	4	19	0	1	0	0	0	0	0	0	0	15496	1160	40	3		3	SULT1C3	2	108863862	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	387790	108863862	134335511	112	36222											
DPP10	57628	broad.mit.edu	37	chr2	116447482	116447482	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagtacgcggcctggggtgtCcaagggcagcagctggtaag	17	10	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116447482	G	G	116447482	2	3	19	1	0	0	0	0	0	0	0	1	4767	842	30	4		4	DPP10	2	116447482	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	7583620	116447482	126751891	113	36223											
PCDP1	200373	broad.mit.edu	37	chr2	120385415	120385415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgatcatgatcgtgttGggcagatacaaggcaagccc	12	9	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120385415	T	T	120385415	1	4	19	0	1	0	0	0	0	0	0	0	11666	1363	47	2		2	PCDP1	2	120385415	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3937933	120385415	122813958	114	36224											
CNTNAP5	129684	broad.mit.edu	37	chr2	125367481	125367481	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgggacctctccaggtGtactgcaatatcactggtaa	9	12	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125367481	T	T	125367481	2	4	19	1	0	0	0	0	0	0	0	1	3682	1364	48	3		3	CNTNAP5	2	125367481	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	4982066	125367481	117831892	115	36225											
MYO7B	4648	broad.mit.edu	37	chr2	128338275	128338275	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcgggaccttgctcccatCgctccaggctgctttccaac	9	16	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128338275	T	T	128338275	1	4	19	0	1	0	0	0	0	0	0	0	10177	899	31	4		4	MYO7B	2	128338275	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2970794	128338275	114861098	116	36226											
UGGT1	56886	broad.mit.edu	37	chr2	128877779	128877779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctattttttttaaagaGgaataattatacttcatttt	3	3	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128877779	A	A	128877779	1	1	19	0	1	0	0	0	0	0	0	0	17067	1015	35	4		4	UGGT1	2	128877779	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	539504	128877779	114321594	117	36227											
POTEE	445582	broad.mit.edu	37	chr2	132021859	132021859	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagagctacgagctgcccgAtggccaggtcatcaccatcg	12	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132021859	T	T	132021859	3	4	19	1	0	0	0	0	1	0	0	0	12360	333	12	5	2889	5	POTEE	2	132021859	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	3144080	132021859	111177514	118	36228											
NCKAP5	344148	broad.mit.edu	37	chr2	133721313	133721313	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctagagctttcaatctctCtaatagcaatttggtctttt	5	9	5	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133721313	A	A	133721313	4	1	19	1	0	0	0	0	0	1	0	0	10318	922	32	3	5222	3	NCKAP5	2	133721313	Nonsense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1699454	133721313	109478060	119	36229											
THSD7B	80731	broad.mit.edu	37	chr2	138169140	138169140	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacttttaacaaaacagcaGataagcatttaatatcttaa	4	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138169140	T	T	138169140	1	4	19	0	1	0	0	0	0	0	0	0	16003	957	33	3		3	THSD7B	2	138169140	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	4447827	138169140	105030233	120	36230											
LRP1B	53353	broad.mit.edu	37	chr2	141115470	141115471	+	Intron	DNP	CC	AA	AA													ttgaagagcaatatttccatCcagaacattttagtcatgta							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	141115471	AA	AA	141115470	1	1	19	0	1	0	0	0	0	0	0	0	9042	870	30	3		3	LRP1B	2	141115470	Intron	DNP	CC	TCGA-05-4420-01A-01D-1265-08	2946330	141115470	102083903	121	36231											
LRP1B	53353	broad.mit.edu	37	chr2	141806919	141806919	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaaattaaactctaaaaTatgccaaatgtatcttgatg	4	6	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141806919	C	C	141806919	1	2	19	0	1	0	0	0	0	0	0	0	9042	1421	49	5		5	LRP1B	2	141806919	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	691449	141806919	101392454	122	36232											
GALNT13	114805	broad.mit.edu	37	chr2	155098507	155098507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataatcaggataaaaaatgCatttattaagatccctcttc	4	7	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155098507	A	A	155098507	1	1	19	0	1	0	0	0	0	0	0	0	6273	725	25	3		3	GALNT13	2	155098507	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	13291588	155098507	88100866	123	36233											
LY75	4065	broad.mit.edu	37	chr2	160663639	160663639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgatccatctaaccaaCtccaagactggtctgaagaa	6	12	3	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160663639	A	A	160663639	3	1	19	1	0	0	0	0	1	0	0	0	9187	565	20	3	341	3	LY75	2	160663639	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	5565132	160663639	82535734	124	36234											
GRB14	2888	broad.mit.edu	37	chr2	165364995	165364995	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaatcgcggtcacccagcaCgtcctactctgctcttcttc	6	17	4	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165364995	T	T	165364995	2	4	19	1	0	0	0	0	0	0	0	1	6823	523	19	4		4	GRB14	2	165364995	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	4701356	165364995	77834378	125	36235											
XIRP2	129446	broad.mit.edu	37	chr2	168107680	168107680	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaatctgtggacgctcaaGaggaaatcaggaaagtggag	15	5	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168107680	T	T	168107680	4	4	19	1	0	0	0	0	0	1	0	0	17557	943	33	3	9808	3	XIRP2	2	168107680	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2742685	168107680	75091693	126	36236											
LRP2	4036	broad.mit.edu	37	chr2	170101331	170101331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaggtgcgtgggtggggCagttgtgctcatcactgcca	16	9	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170101331	A	A	170101331	3	1	19	1	0	0	0	0	1	0	0	0	9043	710	25	3	10897	3	LRP2	2	170101331	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1993651	170101331	73098042	127	36237											
ITGA6	3655	broad.mit.edu	37	chr2	173354047	173354047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacaaaaatctttaggcaCaagtctttattttgaatgcc	5	7	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173354047	A	A	173354047	1	1	19	0	1	0	0	0	0	0	0	0	7950	493	17	3		3	ITGA6	2	173354047	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	3252716	173354047	69845326	128	36238											
TTN	7273	broad.mit.edu	37	chr2	179616220	179616220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagggagagccagtaaacCtcaggtcaacctttatccta	8	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179616220	A	A	179616220	3	1	19	1	0	0	0	0	1	0	0	0	16861	681	24	2	99390	2	TTN	2	179616220	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	6262173	179616220	63583153	129	36239											
COL5A2	1290	broad.mit.edu	37	chr2	189914102	189914102	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggttcccctacaggaccatTggagcctgggggccccacag	13	14	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189914102	A	A	189914102	3	1	19	1	0	0	0	0	1	0	0	0	3729	1812	63	5	1425	5	COL5A2	2	189914102	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	10297882	189914102	53285271	130	36240											
PMS1	5378	broad.mit.edu	37	chr2	190687366	190687366	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catccattcctgtgctaagaGagtaagagtagaagatgttg	11	6	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190687366	A	A	190687366	1	1	19	0	1	0	0	0	0	0	0	0	12237	957	33	4		4	PMS1	2	190687366	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	773264	190687366	52512007	131	36241											
DNAH7	56171	broad.mit.edu	37	chr2	196834820	196834820	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaccgttcacaccgtaacTaataaaaacaatttgttgtt	4	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196834820	A	A	196834820	5	1	19	1	0	0	0	0	0	0	1	0	4646	1536	53	5	10213	5	DNAH7	2	196834820	Splice_Site	SNP	T	TCGA-05-4420-01A-01D-1265-08	6147454	196834820	46364553	132	36242											
SATB2	23314	broad.mit.edu	37	chr2	200213530	200213530	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggagagacttccacggaaGagttggttggctctggctta	14	8	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200213530	T	T	200213530	3	4	19	1	0	0	0	0	1	0	0	0	13966	942	33	3	1154	3	SATB2	2	200213530	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	3378710	200213530	42985843	133	36243											
WDR12	55759	broad.mit.edu	37	chr2	203748526	203748526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtaggtagaaggaaccCaaaaaatatttgtagaaatt	10	3	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203748526	A	A	203748526	1	1	19	0	1	0	0	0	0	0	0	0	17401	609	21	2		2	WDR12	2	203748526	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	3534996	203748526	39450847	134	36244											
ADAM23	8745	broad.mit.edu	37	chr2	207438027	207438027	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttaagattttttggattTtggaatatttgcatattcat	7	2	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207438027	C	C	207438027	1	2	19	0	1	0	0	0	0	0	0	0	245	1856	64	5		5	ADAM23	2	207438027	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	3689501	207438027	35761346	135	36245											
ADAM23	8745	broad.mit.edu	37	chr2	207457502	207457502	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacctaataagccatgagaaTtacaaatttcacaaaatgaa	5	7	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207457502	A	A	207457502	1	1	19	0	1	0	0	0	0	0	0	0	245	1508	52	5		5	ADAM23	2	207457502	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	19475	207457502	35741871	136	36246											
MAP2	4133	broad.mit.edu	37	chr2	210561775	210561775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttaagcggaaaaccacaGgtgactgttcaattctgcaa	10	8	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210561775	T	T	210561775	3	4	19	1	0	0	0	0	1	0	0	0	9327	1014	35	2	4544	2	MAP2	2	210561775	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	3104273	210561775	32637598	137	36247											
SPAG16	79582	broad.mit.edu	37	chr2	214215278	214215278	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttacattatgcatcttatgAaccgactataagggtgttac	8	7	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214215278	T	T	214215278	3	4	19	1	0	0	0	0	1	0	0	0	15094	246	9	5	713	5	SPAG16	2	214215278	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	3653503	214215278	28984095	138	36248											
MARCH4	57574	broad.mit.edu	37	chr2	217124507	217124507	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaaggtatgggcaatggctCcagtgctgagccatgggagg	17	8	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217124507	T	T	217124507	1	4	19	0	1	0	0	0	0	0	0	0	9395	870	30	4		4	MARCH4	2	217124507	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2909229	217124507	26074866	139	36249											
ANKZF1	55139	broad.mit.edu	37	chr2	220095980	220095980	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actcaaactcagccagtgggGaggacttgcagacgctggat	13	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220095980	T	T	220095980	1	4	19	0	1	0	0	0	0	0	0	0	693	1189	41	3		3	ANKZF1	2	220095980	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2971473	220095980	23103393	140	36250											
SP140L	93349	broad.mit.edu	37	chr2	231264881	231264881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggtgtgccgggacggaGgggagctgttctgttgcgac	20	7	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231264881	T	T	231264881	3	4	19	1	0	0	0	0	1	0	0	0	15077	1000	35	2	1295	2	SP140L	2	231264881	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	11168901	231264881	11934492	141	36251											
ALPP	250	broad.mit.edu	37	chr2	233244348	233244348	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctttaaccagtgcaacacGacacgcggcaacgaggtcat	10	13	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233244348	A	A	233244348	2	1	19	1	0	0	0	0	0	0	0	1	548	1045	37	4		4	ALPP	2	233244348	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1979467	233244348	9955025	142	36252											
CHRND	1144	broad.mit.edu	37	chr2	233392136	233392136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgaggagaccctcactaCcaatgtgtggatagagcacg	12	9	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233392136	A	A	233392136	3	1	19	1	0	0	0	0	1	0	0	0	3425	507	18	3	234	3	CHRND	2	233392136	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	147788	233392136	9807237	143	36253											
OTOS	150677	broad.mit.edu	37	chr2	241079494	241079494	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtacctccttcctcctgcaCaggcttggcccctgcaaagg	10	16	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241079494	A	A	241079494	3	1	19	1	0	0	0	0	1	0	0	0	11403	478	17	3	207	3	OTOS	2	241079494	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7687358	241079494	2119879	144	36254											
KIF1A	547	broad.mit.edu	37	chr2	241700155	241700155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacggccacaatggtgcGggggaagggccgcgtctctc	15	14	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241700155	T	T	241700155	3	4	19	1	0	0	0	0	1	0	0	0	8353	1116	39	1	2824	1	KIF1A	2	241700155	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	620661	241700155	1499218	145	36255											
NEU4	129807	broad.mit.edu	37	chr2	242757908	242757908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccgtggaggccaggtgcCtggtgggcccttcagccgtc	15	16	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242757908	A	A	242757908	3	1	19	1	0	0	0	0	1	0	0	0	10439	681	24	2	1042	2	NEU4	2	242757908	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1057753	242757908	441465	146	36256											
TTLL3	26140	broad.mit.edu	37	chr3	9854722	9854722	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaagatggtccatcgctcAggccccaccctgctgccacc	9	17	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9854722	T	T	9854722	2	4	19	1	0	0	0	0	0	0	0	1	16854	175	7	5		5	TTLL3	3	9854722	Silent	SNP	A	TCGA-05-4420-01A-01D-1265-08		9854722	188167708	147	36257											
SEC13	6396	broad.mit.edu	37	chr3	10354103	10354103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactggctttaggtcttagGgccttactcagctgaggaca	13	9	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10354103	T	T	10354103	1	4	19	0	1	0	0	0	0	0	0	0	14093	1247	43	2		2	SEC13	3	10354103	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	499381	10354103	187668327	148	36258											
SYN2	6854	broad.mit.edu	37	chr3	12112030	12112030	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagttgcgtgtggccccgGaggagcacctggtgctgctg	18	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12112030	T	T	12112030	1	4	19	0	1	0	0	0	0	0	0	0	15560	1189	41	3		3	SYN2	3	12112030	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1757927	12112030	185910400	149	36259											
IQSEC1	9922	broad.mit.edu	37	chr3	12957349	12957349	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccaacagaaccaaagaacTcccaggcaggcccacagcaa	7	16	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12957349	A	A	12957349	1	1	19	0	1	0	0	0	0	0	0	0	7887	1566	54	5		5	IQSEC1	3	12957349	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	845319	12957349	185065081	150	36260											
HACL1	26061	broad.mit.edu	37	chr3	15642847	15642847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaacatcgcggtccccgcCagcttccgtaggagcctttc	10	16	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15642847	A	A	15642847	1	1	19	0	1	0	0	0	0	0	0	0	7007	609	21	2		2	HACL1	3	15642847	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2685498	15642847	182379583	151	36261											
GALNTL2	117248	broad.mit.edu	37	chr3	16254188	16254188	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggccaccctgaggaacaGggttcgcattgctgagacct	14	11	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16254188	A	A	16254188	3	1	19	1	0	0	0	0	1	0	0	0	6284	1000	35	4	1332	4	GALNTL2	3	16254188	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	611341	16254188	181768242	152	36262											
KCNH8	131096	broad.mit.edu	37	chr3	19575003	19575003	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggttttgctctttgcacagCacctctgtgtgtccctccag	9	14	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19575003	T	T	19575003	2	4	19	1	0	0	0	0	0	0	0	1	8108	709	25	4		4	KCNH8	3	19575003	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	3320815	19575003	178447427	153	36263											
CLASP2	23122	broad.mit.edu	37	chr3	33618828	33618828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtggcagcactactgtcaGgcaaggagagttagttaaca	12	7	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33618828	T	T	33618828	1	4	19	0	1	0	0	0	0	0	0	0	3486	1015	35	2		2	CLASP2	3	33618828	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	14043825	33618828	164403602	154	36264											
ARPP21	10777	broad.mit.edu	37	chr3	35729481	35729481	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctcccaccaaaccctgcaTatgattctatacgtgtacgt	5	14	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35729481	A	A	35729481	1	1	19	0	1	0	0	0	0	0	0	0	982	1421	49	5		5	ARPP21	3	35729481	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	2110653	35729481	162292949	155	36265											
SLC22A14	9389	broad.mit.edu	37	chr3	38348710	38348710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtctctggacccaaaggtgGgcacccgtggccaatctctg	12	13	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38348710	A	A	38348710	1	1	19	0	1	0	0	0	0	0	0	0	14558	1247	43	4		4	SLC22A14	3	38348710	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2619229	38348710	159673720	156	36266											
SCN10A	6336	broad.mit.edu	37	chr3	38753557	38753557	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacactgagtgctactccttGcaaagtccccacatagcatc	6	15	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38753557	C	C	38753557	1	2	19	0	1	0	0	0	0	0	0	0	14025	1334	46	4		4	SCN10A	3	38753557	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	404847	38753557	159268873	157	36267											
SCN10A	6336	broad.mit.edu	37	chr3	38835624	38835624	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttgattgtcagaacagcCcttctcccaccctcatatct	4	15	5	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835624	A	A	38835624	1	1	19	0	1	0	0	0	0	0	0	0	14025	638	22	2		2	SCN10A	3	38835624	5'Flank	SNP	C	TCGA-05-4420-01A-01D-1265-08	82067	38835624	159186806	158	36268											
SCN11A	11280	broad.mit.edu	37	chr3	38961557	38961557	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaggaaagagaatagtaAgtatgcagattatgcttgaa	11	2	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38961557	G	G	38961557	1	3	19	0	1	0	0	0	0	0	0	0	14026	87	3	5		5	SCN11A	3	38961557	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	125933	38961557	159060873	159	36269											
TRAK1	22906	broad.mit.edu	37	chr3	42265231	42265231	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaactagcttacggtgagGactggaggggggccggttgc	17	8	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42265231	T	T	42265231	1	4	19	0	1	0	0	0	0	0	0	0	16573	1189	41	3		3	TRAK1	3	42265231	3'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	3303674	42265231	155757199	160	36270											
ZNF660	285349	broad.mit.edu	37	chr3	44636480	44636480	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaaaccttgttgatcatcaGagagttcacactggagagaa	10	8	3	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44636480	C	C	44636480	3	2	19	1	0	0	0	0	1	0	0	0	18197	933	33	4	797	4	ZNF660	3	44636480	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2371249	44636480	153385950	161	36271											
PRSS50	29122	broad.mit.edu	37	chr3	46757060	46757060	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacagtcagcacccactgGgaggcaatgatggtgccggc	14	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46757060	A	A	46757060	2	1	19	1	0	0	0	0	0	0	0	1	12737	1219	43	4		4	PRSS50	3	46757060	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	2120580	46757060	151265370	162	36272											
KIF9	64147	broad.mit.edu	37	chr3	47305841	47305841	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccatattgcagtttccccCtgcggaaagcaagacacaga	9	12	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47305841	G	G	47305841	5	3	19	1	0	0	0	0	0	0	1	0	8380	695	24	4	1508	4	KIF9	3	47305841	Splice_Site	SNP	C	TCGA-05-4420-01A-01D-1265-08	548781	47305841	150716589	163	36273											
USP19	10869	broad.mit.edu	37	chr3	49151718	49151718	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcaaaagtgatggagacCtgtggatgtagaggtggcac	17	5	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49151718	A	A	49151718	5	1	19	1	0	0	0	0	0	0	1	0	17176	695	24	2	2021	2	USP19	3	49151718	Splice_Site	SNP	C	TCGA-05-4420-01A-01D-1265-08	1845877	49151718	148870712	164	36274											
CCDC71	64925	broad.mit.edu	37	chr3	49200414	49200414	+	Frame_Shift_Del	DEL	G	-	-													tagccatgccttaggagatcGgggcccaagccgtgttctct							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49200414	-	-	49200414	7	5	19	1	0	1	0	1	0	0	0	0	2872	1124	39	0	179	0	CCDC71	3	49200414	Frame_Shift_Del	DEL	G	TCGA-05-4420-01A-01D-1265-08	48696	49200414	148822016	165	36275											
ADAMTS9	56999	broad.mit.edu	37	chr3	64600955	64600955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcaccagaactagaatGtaagagatgacctaggggaa	13	6	0	5			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64600955	T	T	64600955	1	4	19	0	1	0	0	0	0	0	0	0	273	1392	48	3		3	ADAMTS9	3	64600955	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	15400541	64600955	133421475	166	36276											
EIF4E3	317649	broad.mit.edu	37	chr3	71748936	71748936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctagattatcaaattaatgCattaaagaaaaattttgatt	5	3	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71748936	A	A	71748936	1	1	19	0	1	0	0	0	0	0	0	0	5073	725	25	3		3	EIF4E3	3	71748936	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	7147981	71748936	126273494	167	36277											
ROBO1	6091	broad.mit.edu	37	chr3	79638913	79638913	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacacacacaataaaaagtGaatttaaagcaaagagggaa	7	6	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79638913	T	T	79638913	1	4	19	0	1	0	0	0	0	0	0	0	13624	1305	45	3		3	ROBO1	3	79638913	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	7889977	79638913	118383517	168	36278											
EPHA3	2042	broad.mit.edu	37	chr3	89478378	89478378	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaaacattagagacacCctccaatattgtgccaagca	7	11	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89478378	T	T	89478378	1	4	19	0	1	0	0	0	0	0	0	0	5210	638	22	4		4	EPHA3	3	89478378	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	9839465	89478378	108544052	169	36279											
EPHA6	285220	broad.mit.edu	37	chr3	97167440	97167440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgacctactcttccaCaaggtccaaagcccccagtg	8	16	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97167440	A	A	97167440	3	1	19	1	0	0	0	0	1	0	0	0	5213	478	17	3	1786	3	EPHA6	3	97167440	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7689062	97167440	100854990	170	36280											
CCDC54	84692	broad.mit.edu	37	chr3	107097226	107097226	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggacatttttcctcagTgctaccaagttagaagaatt	7	7	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107097226	G	G	107097226	3	3	19	1	0	0	0	0	1	0	0	0	2852	1693	59	5	794	5	CCDC54	3	107097226	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	9929786	107097226	90925204	171	36281											
TRAT1	50852	broad.mit.edu	37	chr3	108557802	108557802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatgtacagctactccaGtgaccacaccaggtatgttg	8	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108557802	T	T	108557802	3	4	19	1	0	0	0	0	1	0	0	0	16590	1029	36	3	150	3	TRAT1	3	108557802	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1460576	108557802	89464628	172	36282											
TMPRSS7	344805	broad.mit.edu	37	chr3	111775992	111775992	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacatgtaagtgattttcAtatgttttcatatgtgaggc	9	5	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111775992	C	C	111775992	1	2	19	0	1	0	0	0	0	0	0	0	16375	232	8	5		5	TMPRSS7	3	111775992	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	3218190	111775992	86246438	173	36283											
GRAMD1C	54762	broad.mit.edu	37	chr3	113563429	113563429	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctagtccaactgtggaagAgaataatgtggtagttaaaa	10	5	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113563429	G	G	113563429	3	3	19	1	0	0	0	0	1	0	0	0	6815	304	11	5	113	5	GRAMD1C	3	113563429	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1787437	113563429	84459001	174	36284											
PLA1A	51365	broad.mit.edu	37	chr3	119344001	119344001	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcgtggagtttcacttgaAggaactgagaaacaaggaca	11	8	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119344001	T	T	119344001	3	4	19	1	0	0	0	0	1	0	0	0	12083	72	3	5	1077	5	PLA1A	3	119344001	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	5780572	119344001	78678429	175	36285											
POLQ	10721	broad.mit.edu	37	chr3	121264751	121264751	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctcggccgatcagggCaagccacagtcccagcgtcc	10	17	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121264751	A	A	121264751	1	1	19	0	1	0	0	0	0	0	0	0	12303	725	25	3		3	POLQ	3	121264751	5'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	1920750	121264751	76757679	176	36286											
MCM2	4171	broad.mit.edu	37	chr3	127337904	127337904	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcttcgtggtgggcagccAcgtcagacaccaccccagca	11	17	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127337904	G	G	127337904	3	3	19	1	0	0	0	0	1	0	0	0	9479	159	6	5	2098	5	MCM2	3	127337904	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	6073153	127337904	70684526	177	36287											
KBTBD12	166348	broad.mit.edu	37	chr3	127702828	127702829	+	Intron	DNP	GC	AA	AA													gtattctgttaacagtaacaGcaagtggactaagacattgc							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	127702829	AA	AA	127702828	1	1	19	0	1	0	0	0	0	0	0	0	8061	986	34	4		4	KBTBD12	3	127702828	Intron	DNP	GC	TCGA-05-4420-01A-01D-1265-08	364924	127702828	70319602	178	36288											
H1FOO	132243	broad.mit.edu	37	chr3	129268253	129268253	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggggatgggggtcttgAcagccactggagcgggggcg	22	7	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129268253	C	C	129268253	1	2	19	0	1	0	0	0	0	0	0	0	6987	290	10	5		5	H1FOO	3	129268253	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	1565425	129268253	68754177	179	36289											
DNAJC13	23317	broad.mit.edu	37	chr3	132219569	132219569	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatttctgctggtttgatTtctatgtgttaaataaggaa	8	4	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132219569	G	G	132219569	1	3	19	0	1	0	0	0	0	0	0	0	4672	1856	64	5		5	DNAJC13	3	132219569	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	2951316	132219569	65802861	180	36290											
EPHB1	2047	broad.mit.edu	37	chr3	134873028	134873028	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatcatgcaccaagtcagTgccactatgaggagcatcac	8	14	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134873028	G	G	134873028	3	3	19	1	0	0	0	0	1	0	0	0	5216	1693	59	5	1354	5	EPHB1	3	134873028	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	2653459	134873028	63149402	181	36291											
CLDN18	51208	broad.mit.edu	37	chr3	137717810	137717810	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaccagtggagcacccaaGacttgtacaacaaccccgta	9	13	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137717810	A	A	137717810	3	1	19	1	0	0	0	0	1	0	0	0	3510	942	33	4	102	4	CLDN18	3	137717810	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2844782	137717810	60304620	182	36292											
CLSTN2	64084	broad.mit.edu	37	chr3	140285094	140285094	+	Nonstop_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactccaccctcccctactAgtgcccaggggtctgctgcc	9	18	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140285094	G	G	140285094	4	3	19	1	0	0	0	0	0	0	0	0	3594	433	15	5	2933	5	CLSTN2	3	140285094	Nonstop_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	2567284	140285094	57737336	183	36293											
RASA2	5922	broad.mit.edu	37	chr3	141290443	141290443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattacatgttgttgaaattGgaccttagtttgacagattg	9	4	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141290443	A	A	141290443	1	1	19	0	1	0	0	0	0	0	0	0	13169	1363	47	4		4	RASA2	3	141290443	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1005349	141290443	56731987	184	36294											
PCOLCE2	26577	broad.mit.edu	37	chr3	142567166	142567166	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgccactggacacaaggGctccaggccggaaagtgcca	13	12	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142567166	A	A	142567166	3	1	19	1	0	0	0	0	1	0	0	0	11689	1203	42	4	934	4	PCOLCE2	3	142567166	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1276723	142567166	55455264	185	36295											
C3orf58	205428	broad.mit.edu	37	chr3	143704283	143704283	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttgaatgtaataagaaaatCcaaagtcattcctagtagca	7	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143704283	G	G	143704283	1	3	19	0	1	0	0	0	0	0	0	0	2258	870	30	4		4	C3orf58	3	143704283	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1137117	143704283	54318147	186	36296											
ZIC4	84107	broad.mit.edu	37	chr3	147108911	147108911	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgtgtagcacttgtcgcAgccccgcaccttgcacgtgt	12	14	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147108911	T	T	147108911	3	4	19	1	0	0	0	0	1	0	0	0	17807	188	7	5	201	5	ZIC4	3	147108911	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	3404628	147108911	50913519	187	36297											
GPR149	344758	broad.mit.edu	37	chr3	154070094	154070094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcctgaccagccacttgacCagccattcctccgttgggga	10	16	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154070094	A	A	154070094	1	1	19	0	1	0	0	0	0	0	0	0	6719	609	21	2		2	GPR149	3	154070094	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6961183	154070094	43952336	188	36298											
GMPS	8833	broad.mit.edu	37	chr3	155649598	155649598	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtggaatctccagtaaAgatgaacctgactgggaatc	12	7	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155649598	T	T	155649598	3	4	19	1	0	0	0	0	1	0	0	0	6562	69	3	5	1655	5	GMPS	3	155649598	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1579504	155649598	42372832	189	36299											
SI	6476	broad.mit.edu	37	chr3	164785378	164785378	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttccaaataaaaaataacGtggtgattagtttcatagaa	7	4	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164785378	C	C	164785378	1	2	19	0	1	0	0	0	0	0	0	0	14410	1160	40	4		4	SI	3	164785378	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	9135780	164785378	33237052	190	36300											
ZBBX	79740	broad.mit.edu	37	chr3	167000007	167000007	+	Intron	DEL	A	-	-													aattagcattatctaaagtgAaaaaaaaaataggattacct							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167000007	-	-	167000007	6	5	19	0	1	1	0	1	0	0	0	0	17643	261	9	0		0	ZBBX	3	167000007	Intron	DEL	A	TCGA-05-4420-01A-01D-1265-08	2214629	167000007	31022423	191	36301											
GOLIM4	27333	broad.mit.edu	37	chr3	167761282	167761282	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgatgttcctcttccaaGtcactgtgctgtttctttag	8	10	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167761282	A	A	167761282	2	1	19	1	0	0	0	0	0	0	0	1	6630	1020	36	4		4	GOLIM4	3	167761282	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	761275	167761282	30261148	192	36302											
SPATA16	83893	broad.mit.edu	37	chr3	172634000	172634000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgggagtttgccctcaGgctacatttattaccacagg	11	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172634000	T	T	172634000	1	4	19	0	1	0	0	0	0	0	0	0	15117	1015	35	2		2	SPATA16	3	172634000	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	4872718	172634000	25388430	193	36303											
PIK3CA	5290	broad.mit.edu	37	chr3	178937196	178937196	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagtgtagaaaaaaacaccCttaacattatttccatagat	4	7	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178937196	T	T	178937196	1	4	19	0	1	0	0	0	0	0	0	0	12008	696	24	4		4	PIK3CA	3	178937196	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6303196	178937196	19085234	194	36304											
KCNMB3	27094	broad.mit.edu	37	chr3	178984520	178984520	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccaggggtctgagaaaaTggctccctttcacctgagtc	12	11	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178984520	C	C	178984520	1	2	19	0	1	0	0	0	0	0	0	0	8146	1479	51	5		5	KCNMB3	3	178984520	5'UTR	SNP	T	TCGA-05-4420-01A-01D-1265-08	47324	178984520	19037910	195	36305											
LAMP3	27074	broad.mit.edu	37	chr3	182870212	182870212	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgaaaattcaacagaaggTtggattttcgggtgccacag	11	8	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182870212	A	A	182870212	3	1	19	1	0	0	0	0	1	0	0	0	8691	1725	60	5	427	5	LAMP3	3	182870212	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	3885692	182870212	15152218	196	36306											
ABCC5	10057	broad.mit.edu	37	chr3	183669353	183669353	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgggaggaagctcgcagCgtgccctgaggagcagagca	17	11	0	2	rs139563504	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183669353	T	T	183669353	2	4	19	1	0	0	0	0	0	0	0	1	56	755	27	4		4	ABCC5	3	183669353	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	799141	183669353	14353077	197	36307											
LEPREL1	55214	broad.mit.edu	37	chr3	189706961	189706961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attattataatcctcacttcCggactgcaaaacctttttac	3	11	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189706961	A	A	189706961	1	1	19	0	1	0	0	0	0	0	0	0	8802	667	23	1		1	LEPREL1	3	189706961	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6037608	189706961	8315469	198	36308											
MUC4	4585	broad.mit.edu	37	chr3	195505433	195505433	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagggagctggaaactcctTgtctctcccctgctcatatc	9	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195505433	A	A	195505433	1	1	19	0	1	0	0	0	0	0	0	0	10072	1827	63	5		5	MUC4	3	195505433	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	5798472	195505433	2516997	199	36309											
BDH1	622	broad.mit.edu	37	chr3	197241022	197241022	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctgggattcacgagctcAcctctgctgagttgtggaca	11	12	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197241022	T	T	197241022	1	4	19	0	1	0	0	0	0	0	0	0	1395	174	6	5		5	BDH1	3	197241022	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	1735589	197241022	781408	200	36310											
LRCH3	84859	broad.mit.edu	37	chr3	197598238	197598238	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctaccttgtgatctcGgagcagctctaactgacggt	10	11	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197598238	T	T	197598238	4	4	19	1	0	0	0	0	0	1	0	0	9021	1117	39	1	2109	1	LRCH3	3	197598238	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	357216	197598238	424192	201	36311											
RGS12	6002	broad.mit.edu	37	chr4	3432320	3432320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgccacaggcaacggccGggagagcgcctcccagcctg	14	16	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3432320	T	T	3432320	3	4	19	1	0	0	0	0	1	0	0	0	13404	1116	39	1	3872	1	RGS12	4	3432320	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08		3432320	187721956	202	36312											
PDS5A	23244	broad.mit.edu	37	chr4	39977929	39977929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagatgttatctgagataCaacagtacctttcagagggg	10	7	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39977929	A	A	39977929	1	1	19	0	1	0	0	0	0	0	0	0	11785	493	17	3		3	PDS5A	4	39977929	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	36545609	39977929	151176347	203	36313											
CWH43	80157	broad.mit.edu	37	chr4	49018911	49018911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggactacccacgtagCtctgcagtctttgattatgc	8	14	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49018911	A	A	49018911	1	1	19	0	1	0	0	0	0	0	0	0	4106	812	28	3		3	CWH43	4	49018911	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	9040982	49018911	142135365	204	36314											
KDR	3791	broad.mit.edu	37	chr4	55980997	55980997	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctccaagatcttaataCaaggatatgttattaatgat	5	5	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55980997	A	A	55980997	1	1	19	0	1	0	0	0	0	0	0	0	8209	493	17	3		3	KDR	4	55980997	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6962086	55980997	135173279	205	36315											
ARL9	132946	broad.mit.edu	37	chr4	57377383	57377384	+	5'UTR	DNP	GG	TT	TT													caaatcctagtgctgggcctGgatggagcaggaaaaaccag							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	57377384	TT	TT	57377383	1	4	19	0	1	0	0	0	0	0	0	0	952	1363	47	2		2	ARL9	4	57377383	5'UTR	DNP	GG	TCGA-05-4420-01A-01D-1265-08	1396386	57377383	133776893	206	36316											
CSN1S1	1446	broad.mit.edu	37	chr4	70804920	70804920	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatccagcatcagttcatcGagtgaggtaaataattttga	9	6	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70804920	A	A	70804920	2	1	19	1	0	0	0	0	0	0	0	1	3981	1045	37	4		4	CSN1S1	4	70804920	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	13427537	70804920	120349356	207	36317											
C4orf40	401137	broad.mit.edu	37	chr4	71019981	71019981	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctagacagactaaaaaaGccatgtattctttcgtttct	5	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71019981	A	A	71019981	1	1	19	0	1	0	0	0	0	0	0	0	2292	986	34	4		4	C4orf40	4	71019981	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	215061	71019981	120134295	208	36318											
RUFY3	22902	broad.mit.edu	37	chr4	71588535	71588535	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatgggggagggctgggagGatcagggagaggtagaaaga	21	2	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71588535	T	T	71588535	1	4	19	0	1	0	0	0	0	0	0	0	13851	1189	41	3		3	RUFY3	4	71588535	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	568554	71588535	119565741	209	36319											
FRAS1	80144	broad.mit.edu	37	chr4	79385788	79385788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaaatgagaggctgacctGgtggcagctatcacgttgca	13	9	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385788	T	T	79385788	1	4	19	0	1	0	0	0	0	0	0	0	6102	1363	47	2		2	FRAS1	4	79385788	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	7797253	79385788	111768488	210	36320											
GPRIN3	285513	broad.mit.edu	37	chr4	90169061	90169061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaagtatctgaggaaatgGatctccgggtctggctattt	12	6	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90169061	T	T	90169061	3	4	19	1	0	0	0	0	1	0	0	0	6797	1174	41	3	133	3	GPRIN3	4	90169061	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	10783273	90169061	100985215	211	36321											
UBE2D3	7323	broad.mit.edu	37	chr4	103722680	103722681	+	Frame_Shift_Ins	INS	-	A	A													caaatgctgccattactgttINSaatatttggatgataaattc							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103722681	A	A	103722680	7	5	19	1	0	1	1	0	0	0	0	0	16976	1754	61	0	273	0	UBE2D3	4	103722680	Frame_Shift_Ins	INS	-	TCGA-05-4420-01A-01D-1265-08	13553619	103722680	87431596	212	36322											
NHEDC1	150159	broad.mit.edu	37	chr4	103870474	103870474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgtaaaatttttccccCaataatggcactataaaaaa	5	7	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103870474	A	A	103870474	3	1	19	1	0	0	0	0	1	0	0	0	10495	594	21	2	1361	2	NHEDC1	4	103870474	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	147794	103870474	87283802	213	36323											
PCDH18	54510	broad.mit.edu	37	chr4	138451033	138451033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagttgattcggccaccCtgcagttataggatctagtg	12	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138451033	A	A	138451033	3	1	19	1	0	0	0	0	1	0	0	0	11607	681	24	2	1213	2	PCDH18	4	138451033	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	34580559	138451033	52703243	214	36324											
INPP4B	8821	broad.mit.edu	37	chr4	143130292	143130292	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatttcatcctaattcccagGaaagttctatgagcttatta	5	8	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143130292	A	A	143130292	1	1	19	0	1	0	0	0	0	0	0	0	7823	1189	41	4		4	INPP4B	4	143130292	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	4679259	143130292	48023984	215	36325											
PRMT10	90826	broad.mit.edu	37	chr4	148604886	148604886	+	Intron	DEL	G	-	-													ctccgcttttttttttttctGtttttttttttttttttacg					rs6535547		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	148604886	-	-	148604886	6	5	19	0	1	1	0	1	0	0	0	0	12642	1392	48	0		0	PRMT10	4	148604886	Intron	DEL	G	TCGA-05-4420-01A-01D-1265-08	5474594	148604886	42549390	216	36326											
LRBA	987	broad.mit.edu	37	chr4	151520061	151520061	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaccataaaatgtggtgTtggaccattttacagtgcct	8	8	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151520061	G	G	151520061	1	3	19	0	1	0	0	0	0	0	0	0	9018	1740	60	5		5	LRBA	4	151520061	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	2915175	151520061	39634215	217	36327											
ARFIP1	27236	broad.mit.edu	37	chr4	153750861	153750861	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaagttgatgactctcgtGaacatagctttaatagggta	11	5	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153750861	T	T	153750861	4	4	19	1	0	0	0	0	0	1	0	0	856	1291	45	3	78	3	ARFIP1	4	153750861	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2230800	153750861	37403415	218	36328											
DCHS2	54798	broad.mit.edu	37	chr4	155161691	155161691	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctctttaagccctttacctGatagaaatcttgagaaaaca	5	9	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155161691	A	A	155161691	4	1	19	1	0	0	0	0	0	1	0	0	4321	1299	45	4	2770	4	DCHS2	4	155161691	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1410830	155161691	35992585	219	36329											
DCHS2	54798	broad.mit.edu	37	chr4	155226292	155226293	+	Missense_Mutation	DNP	GG	TT	TT													atttctctgtcaagtatggtGgttgtcactacctctccagt							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	155226293	TT	TT	155226292	3	4	19	1	0	0	0	0	1	0	0	0	4321	1335	47	2	4803	2	DCHS2	4	155226292	Missense_Mutation	DNP	GG	TCGA-05-4420-01A-01D-1265-08	64601	155226292	35927984	220	36330											
PALLD	23022	broad.mit.edu	37	chr4	169845379	169845379	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccttttgtatatcattgaTagagaattcatctcatgttt	5	7	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169845379	C	C	169845379	1	2	19	0	1	0	0	0	0	0	0	0	11501	1421	49	5		5	PALLD	4	169845379	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	14619087	169845379	21308897	221	36331											
SH3RF1	57630	broad.mit.edu	37	chr4	170077704	170077704	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggattccattgacttcccCatggtaccaattttcatcca	5	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170077704	T	T	170077704	3	4	19	1	0	0	0	0	1	0	0	0	14371	594	21	4	2186	4	SH3RF1	4	170077704	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	232325	170077704	21076572	222	36332											
SCRG1	11341	broad.mit.edu	37	chr4	174312327	174312327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataccatttccttactttGggcagcagagcaattcgctg	9	10	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174312327	T	T	174312327	3	4	19	1	0	0	0	0	1	0	0	0	14049	1348	47	2	65	2	SCRG1	4	174312327	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	4234623	174312327	16841949	223	36333											
ADAM29	11086	broad.mit.edu	37	chr4	175899297	175899297	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accaattccaaaaactgtatCcagaaaaggtacattaaaaa	4	8	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175899297	A	A	175899297	1	1	19	0	1	0	0	0	0	0	0	0	247	870	30	3		3	ADAM29	4	175899297	3'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	1586970	175899297	15254979	224	36334											
WWC2	80014	broad.mit.edu	37	chr4	184182214	184182214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaagtgatcagatagatGtggattatcagtataaactg	10	4	3	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184182214	T	T	184182214	3	4	19	1	0	0	0	0	1	0	0	0	17539	1377	48	3	1480	3	WWC2	4	184182214	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	8282917	184182214	6972062	225	36335											
LRRC14B	389257	broad.mit.edu	37	chr5	194952	194952	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctcagtggacacaacctGgtcagcctgtacccctcgac	9	16	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194952	A	A	194952	2	1	19	1	0	0	0	0	0	0	0	1	9056	1335	47	4		4	LRRC14B	5	194952	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08		194952	180720308	226	36336											
TERT	7015	broad.mit.edu	37	chr5	1282455	1282455	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagctgcacagccagggaaGcacaggcaagtggagacagg	16	9	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1282455	A	A	1282455	1	1	19	0	1	0	0	0	0	0	0	0	15886	986	34	4		4	TERT	5	1282455	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1087503	1282455	179632805	227	36337											
ADAMTS16	170690	broad.mit.edu	37	chr5	5235286	5235286	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactacaagtggaagccttaCactcaagtagaaggtaaatc	8	9	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5235286	A	A	5235286	4	1	19	1	0	0	0	0	0	1	0	0	261	489	17	3	2060	3	ADAMTS16	5	5235286	Nonsense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	3952831	5235286	175679974	228	36338											
TRIO	7204	broad.mit.edu	37	chr5	14363744	14363744	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttgacgtctctgtcctTtggcagagagacatctcttc	10	10	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14363744	A	A	14363744	1	1	19	0	1	0	0	0	0	0	0	0	16677	1856	64	5		5	TRIO	5	14363744	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	9128458	14363744	166551516	229	36339											
ZNF622	90441	broad.mit.edu	37	chr5	16458528	16458528	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacatatactttaagcttaTggtctatttccctcagtatg	5	8	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16458528	A	A	16458528	1	1	19	0	1	0	0	0	0	0	0	0	18173	1479	51	5		5	ZNF622	5	16458528	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	2094784	16458528	164456732	230	36340											
CDH10	1008	broad.mit.edu	37	chr5	24510016	24510016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatgatttttaagttgtgGttgagttctcttacatagtt	9	3	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24510016	T	T	24510016	1	4	19	0	1	0	0	0	0	0	0	0	3126	1276	44	3		3	CDH10	5	24510016	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	8051488	24510016	156405244	231	36341											
RNASEN	29102	broad.mit.edu	37	chr5	31529112	31529112	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgctcctctctcggttcTcccaaactattgccattccc	5	17	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31529112	C	C	31529112	1	2	19	0	1	0	0	0	0	0	0	0	13528	1566	54	5		5	RNASEN	5	31529112	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	7019096	31529112	149386148	232	36342											
PDZD2	23037	broad.mit.edu	37	chr5	32048790	32048790	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactcttccagtgcctcacaGgtccgaccagggctgtggat	12	13	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32048790	A	A	32048790	2	1	19	1	0	0	0	0	0	0	0	1	11795	1014	35	4		4	PDZD2	5	32048790	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	519678	32048790	148866470	233	36343											
C1QTNF3	114899	broad.mit.edu	37	chr5	34043079	34043079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactttctccctcctggagCcgctacggccagtctgctgg	10	16	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34043079	A	A	34043079	1	1	19	0	1	0	0	0	0	0	0	0	1984	739	26	3		3	C1QTNF3	5	34043079	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1994289	34043079	146872181	234	36344											
SKP2	6502	broad.mit.edu	37	chr5	36152994	36152994	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtctccgccctggagaaaGaggagcccgacagtgagaac	15	11	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36152994	C	C	36152994	3	2	19	1	0	0	0	0	1	0	0	0	14475	943	33	4	136	4	SKP2	5	36152994	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2109915	36152994	144762266	235	36345											
NUP155	9631	broad.mit.edu	37	chr5	37341367	37341367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatggggtaaaattatgCatcagtaatagaaaacaagg	11	3	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37341367	A	A	37341367	1	1	19	0	1	0	0	0	0	0	0	0	10851	725	25	3		3	NUP155	5	37341367	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1188373	37341367	143573893	236	36346											
C7	730	broad.mit.edu	37	chr5	40937557	40937557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatgcattttaagaattTgtagagttctgtaataaact	7	3	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40937557	A	A	40937557	1	1	19	0	1	0	0	0	0	0	0	0	2400	1827	63	5		5	C7	5	40937557	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	3596190	40937557	139977703	237	36347											
GHR	2690	broad.mit.edu	37	chr5	42629317	42629317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagtaactggaatagtgaCtgagttgaaattttataggc	12	3	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42629317	A	A	42629317	1	1	19	0	1	0	0	0	0	0	0	0	6435	580	20	3		3	GHR	5	42629317	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1691760	42629317	138285943	238	36348											
GHR	2690	broad.mit.edu	37	chr5	42700125	42700125	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagatgttgctacaccttAcactttgacttttctttcta	5	9	2	2	rs140356468	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42700125	G	G	42700125	1	3	19	0	1	0	0	0	0	0	0	0	6435	406	14	5		5	GHR	5	42700125	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	70808	42700125	138215135	239	36349											
CDK7	1022	broad.mit.edu	37	chr5	68531237	68531237	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagtttgccaccgtttacaAggccagagataagaacacca	8	11	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68531237	G	G	68531237	3	3	19	1	0	0	0	0	1	0	0	0	3179	72	3	5	89	5	CDK7	5	68531237	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	25831112	68531237	112384023	240	36350											
BDP1	55814	broad.mit.edu	37	chr5	70812006	70812006	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagaaagacaggacagaggCaaatagtagacaaaggtgaa	12	4	0	5			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70812006	G	G	70812006	3	3	19	1	0	0	0	0	1	0	0	0	1400	711	25	4	4850	4	BDP1	5	70812006	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2280769	70812006	110103254	241	36351											
IQGAP2	10788	broad.mit.edu	37	chr5	75923139	75923139	+	Intron	DEL	G	-	-													gttgctgattaagaatttgtGggaattatgattaaatggct							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75923139	-	-	75923139	6	5	19	0	1	1	0	1	0	0	0	0	7885	1363	47	0		0	IQGAP2	5	75923139	Intron	DEL	G	TCGA-05-4420-01A-01D-1265-08	5111133	75923139	104992121	242	36352											
CMYA5	202333	broad.mit.edu	37	chr5	79029481	79029481	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacaagccacaccaaccGttggaattaccaaatgctgg	8	11	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79029481	T	T	79029481	2	4	19	1	0	0	0	0	0	0	0	1	3622	1132	40	3		3	CMYA5	5	79029481	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	3106342	79029481	101885779	243	36353											
SLCO6A1	133482	broad.mit.edu	37	chr5	101735314	101735314	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagaaaatataagtgtagAaaagataaaagcaatgaaca	7	4	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101735314	G	G	101735314	3	3	19	1	0	0	0	0	1	0	0	0	14846	246	9	5	416	5	SLCO6A1	5	101735314	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	22705833	101735314	79179946	244	36354											
CAMK4	814	broad.mit.edu	37	chr5	110818340	110818340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcctacctacagtggccCctgaggacttaaacaatttt	8	11	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110818340	A	A	110818340	1	1	19	0	1	0	0	0	0	0	0	0	2631	638	22	2		2	CAMK4	5	110818340	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	9083026	110818340	70096920	245	36355											
BRD8	10902	broad.mit.edu	37	chr5	137500094	137500094	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggagacaacatgctttcAggggatgcctgaaaaccaga	12	8	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137500094	G	G	137500094	2	3	19	1	0	0	0	0	0	0	0	1	1515	175	7	5		5	BRD8	5	137500094	Silent	SNP	A	TCGA-05-4420-01A-01D-1265-08	26681754	137500094	43415166	246	36356											
PCDHGB5	56101	broad.mit.edu	37	chr5	140779851	140779851	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctcctccagccctgccgcCtggagctgcttccaacctgg	10	19	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140779851	T	T	140779851	2	4	19	1	0	0	0	0	0	0	0	1	11660	668	24	4		4	PCDHGB5	5	140779851	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	3279757	140779851	40135409	247	36357											
LARS	51520	broad.mit.edu	37	chr5	145531365	145531365	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttctacattttttctaaTtaagaaaatcacagagcatg	4	6	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145531365	A	A	145531365	1	1	19	0	1	0	0	0	0	0	0	0	8706	1508	52	5		5	LARS	5	145531365	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	4751514	145531365	35383895	248	36358											
PDE6A	5145	broad.mit.edu	37	chr5	149312257	149312257	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgggagaaggaaatgCtgccccactcaccaaatgtg	12	10	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149312257	T	T	149312257	1	4	19	0	1	0	0	0	0	0	0	0	11739	812	28	4		4	PDE6A	5	149312257	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	3780892	149312257	31603003	249	36359											
SPARC	6678	broad.mit.edu	37	chr5	151045789	151045789	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttctccagatgcctcatcCttctgctccaatccccaggc	5	17	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151045789	T	T	151045789	1	4	19	0	1	0	0	0	0	0	0	0	15111	696	24	4		4	SPARC	5	151045789	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1733532	151045789	29869471	250	36360											
KIF4B	285643	broad.mit.edu	37	chr5	154393371	154393371	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggcggcgggagaccccgGgtgaacggggaagggacatt	20	9	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154393371	T	T	154393371	1	4	19	0	1	0	0	0	0	0	0	0	8374	1247	43	2		2	KIF4B	5	154393371	5'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	3347582	154393371	26521889	251	36361											
ADAM19	8728	broad.mit.edu	37	chr5	156920037	156920037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggtccagcatgtcacCctcctcctcaggacctcggt	9	18	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156920037	A	A	156920037	3	1	19	1	0	0	0	0	1	0	0	0	240	623	22	2	936	2	ADAM19	5	156920037	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2526666	156920037	23995223	252	36362											
ODZ2	57451	broad.mit.edu	37	chr5	167545349	167545349	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatattctaaagggacgtgCcagtgctacagcggctggaa	12	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167545349	T	T	167545349	2	4	19	1	0	0	0	0	0	0	0	1	10930	747	26	4		4	ODZ2	5	167545349	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	10625312	167545349	13369911	253	36363											
SLIT3	6586	broad.mit.edu	37	chr5	168127707	168127707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagcaaaagagggagaaGcacctggttagggggacttc	17	6	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168127707	T	T	168127707	1	4	19	0	1	0	0	0	0	0	0	0	14855	986	34	3		3	SLIT3	5	168127707	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	582358	168127707	12787553	254	36364											
DBN1	1627	broad.mit.edu	37	chr5	176894217	176894217	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgccccatggggtccatGaggggtggctcagccaggcc	15	14	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176894217	C	C	176894217	1	2	19	0	1	0	0	0	0	0	0	0	4285	1305	45	4		4	DBN1	5	176894217	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	8766510	176894217	4021043	255	36365											
SERPINB9	5272	broad.mit.edu	37	chr6	2895574	2895574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaggaataggaagagcCgcaggaggaggacgggttgg	21	4	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2895574	A	A	2895574	1	1	19	0	1	0	0	0	0	0	0	0	14221	667	23	1		1	SERPINB9	6	2895574	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08		2895574	168219493	256	36366											
GCM2	9247	broad.mit.edu	37	chr6	10877358	10877358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggtcaccctctccctgGccccatgtcctcactctgct	6	20	4	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10877358	T	T	10877358	1	4	19	0	1	0	0	0	0	0	0	0	6360	1218	42	3		3	GCM2	6	10877358	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	7981784	10877358	160237709	257	36367											
KIAA0319	9856	broad.mit.edu	37	chr6	24595994	24595994	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccttaggcggaacctcctTaagctcatacagcctgaatg	9	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24595994	A	A	24595994	1	1	19	0	1	0	0	0	0	0	0	0	8238	1769	61	5		5	KIAA0319	6	24595994	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	13718636	24595994	146519073	258	36368											
SLC17A4	10050	broad.mit.edu	37	chr6	25776840	25776840	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagtgggatcctgtctgcCttgccgtttgttgttggatg	14	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25776840	T	T	25776840	2	4	19	1	0	0	0	0	0	0	0	1	14532	668	24	4		4	SLC17A4	6	25776840	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1180846	25776840	145338227	259	36369											
SLC17A3	10786	broad.mit.edu	37	chr6	25861926	25861926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaattgcaaactgacccCcaagtattgaggactgaaat	7	11	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25861926	T	T	25861926	3	4	19	1	0	0	0	0	1	0	0	0	14531	623	22	4	977	4	SLC17A3	6	25861926	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	85086	25861926	145253141	260	36370											
BTN3A2	11118	broad.mit.edu	37	chr6	26373430	26373430	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatcatgtttaaggtttatTtcccgaaacaccaacctcac	5	12	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26373430	C	C	26373430	1	2	19	0	1	0	0	0	0	0	0	0	1573	1856	64	5		5	BTN3A2	6	26373430	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	511504	26373430	144741637	261	36371											
OR2J2	26707	broad.mit.edu	37	chr6	29142178	29142178	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctctctttttcattccaGtcatgtgcatgtatctccag	5	11	5	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29142178	T	T	29142178	3	4	19	1	0	0	0	0	1	0	0	0	11097	1029	36	3	768	3	OR2J2	6	29142178	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2768748	29142178	141972889	262	36372											
C6orf136	221545	broad.mit.edu	37	chr6	30617664	30617664	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggaactgcccacccttcCcctgccaccccgtcaggaga	8	20	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30617664	G	G	30617664	2	3	19	1	0	0	0	0	0	0	0	1	2354	610	22	4		4	C6orf136	6	30617664	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1475486	30617664	140497403	263	36373											
C6orf15	29113	broad.mit.edu	37	chr6	31079232	31079232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaagagccaggagggcGgaggactccaggaggaaatg	17	8	0	2	rs150278073	byFrequency	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31079232	T	T	31079232	3	4	19	1	0	0	0	0	1	0	0	0	2359	1116	39	1	77	1	C6orf15	6	31079232	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	461568	31079232	140035835	264	36374											
MICB	4277	broad.mit.edu	37	chr6	31477729	31477729	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attcaactccctgcctggatCtcaccagcactttccctctg	5	17	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31477729	G	G	31477729	1	3	19	0	1	0	0	0	0	0	0	0	9668	928	32	4		4	MICB	6	31477729	3'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	398497	31477729	139637338	265	36375											
BAT3	7917	broad.mit.edu	37	chr6	31607272	31607272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctattctgcttcaaggtGgcacctgctgcctgtagctc	9	14	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31607272	T	T	31607272	1	4	19	0	1	0	0	0	0	0	0	0	1327	1363	47	2		2	BAT3	6	31607272	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	129543	31607272	139507795	266	36376											
NOTCH4	4855	broad.mit.edu	37	chr6	32190540	32190540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgggcgttctggcaggGgtcaggaaactggcacgtct	17	9	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32190540	T	T	32190540	3	4	19	1	0	0	0	0	1	0	0	0	10646	1232	43	2	5924	2	NOTCH4	6	32190540	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	583268	32190540	138924527	267	36377											
HLA-DRB5	3127	broad.mit.edu	37	chr6	32523304	32523304	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacacttgggtgctccactTggcacctatttatcatcctc	6	14	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32523304	G	G	32523304	1	3	19	0	1	0	0	0	0	0	0	0	7276	1827	63	5		5	HLA-DRB5	6	32523304	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	332764	32523304	138591763	268	36378											
COL11A2	1302	broad.mit.edu	37	chr6	33137743	33137743	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacatctcattctcttttGtctccccacccaaaattggc	3	17	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33137743	A	A	33137743	1	1	19	0	1	0	0	0	0	0	0	0	3700	1392	48	4		4	COL11A2	6	33137743	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	614439	33137743	137977324	269	36379											
VPS52	6293	broad.mit.edu	37	chr6	33235811	33235811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtcagtctacctgtctccCaagaaaccagatgcccacac	6	15	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33235811	T	T	33235811	1	4	19	0	1	0	0	0	0	0	0	0	17341	609	21	4		4	VPS52	6	33235811	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	98068	33235811	137879256	270	36380											
KIFC1	3833	broad.mit.edu	37	chr6	33372021	33372021	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcctgagcacctatcttTagcagtataggtgctgctga	9	10	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33372021	C	C	33372021	1	2	19	0	1	0	0	0	0	0	0	0	8382	1769	61	5		5	KIFC1	6	33372021	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	136210	33372021	137743046	271	36381											
SCUBE3	222663	broad.mit.edu	37	chr6	35210036	35210036	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagatcaaggatgccaaAtgccgtttgcacctgcgaaa	9	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35210036	G	G	35210036	2	3	19	1	0	0	0	0	0	0	0	1	14059	98	4	5		5	SCUBE3	6	35210036	Silent	SNP	A	TCGA-05-4420-01A-01D-1265-08	1838015	35210036	135905031	272	36382											
MAPK13	5603	broad.mit.edu	37	chr6	36107043	36107043	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgccacagcacctctttacGcaccttaaaccatgctgcct	5	17	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36107043	A	A	36107043	1	1	19	0	1	0	0	0	0	0	0	0	9367	1102	38	4		4	MAPK13	6	36107043	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	897007	36107043	135008024	273	36383											
DNAH8	1769	broad.mit.edu	37	chr6	38889056	38889056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgaaagtcccgtctagtGcagaaattatgtgatttgtg	11	7	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38889056	T	T	38889056	1	4	19	0	1	0	0	0	0	0	0	0	4647	1334	46	3		3	DNAH8	6	38889056	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2782013	38889056	132226011	274	36384											
DNAH8	1769	broad.mit.edu	37	chr6	38976690	38976690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacccgggaggctattgttTatagattatctgaagatatg	11	5	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38976690	C	C	38976690	3	2	19	1	0	0	0	0	1	0	0	0	4647	1754	61	5	13002	5	DNAH8	6	38976690	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	87634	38976690	132138377	275	36385											
KIF6	221458	broad.mit.edu	37	chr6	39545820	39545820	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagaaaaagaaaaaaaagtCtgcagacttactgaaggagc	9	5	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39545820	T	T	39545820	1	4	19	0	1	0	0	0	0	0	0	0	8378	928	32	4		4	KIF6	6	39545820	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	569130	39545820	131569247	276	36386											
TREML4	285852	broad.mit.edu	37	chr6	41198006	41198006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgtggagcccccaggcCatgactcaaaatttggtagt	11	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41198006	A	A	41198006	1	1	19	0	1	0	0	0	0	0	0	0	16598	609	21	2		2	TREML4	6	41198006	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1652186	41198006	129917061	277	36387											
BYSL	705	broad.mit.edu	37	chr6	41900001	41900001	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accatagtgtaagggccagcAgaggggaagaaaaaaagggg	16	5	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41900001	C	C	41900001	1	2	19	0	1	0	0	0	0	0	0	0	1586	203	7	5		5	BYSL	6	41900001	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	701995	41900001	129215066	278	36388											
PPP2R5D	5528	broad.mit.edu	37	chr6	42975334	42975334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttccccttaagctgaaTatattgggtttcatccatgt	6	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42975334	C	C	42975334	1	2	19	0	1	0	0	0	0	0	0	0	12496	1421	49	5		5	PPP2R5D	6	42975334	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1075333	42975334	128139733	279	36389											
CD2AP	23607	broad.mit.edu	37	chr6	47567080	47567080	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcatcaaaatttgaaactGagccagtatcaaaactaaag	5	7	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47567080	A	A	47567080	3	1	19	1	0	0	0	0	1	0	0	0	3024	1291	45	4	1368	4	CD2AP	6	47567080	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	4591746	47567080	123547987	280	36390											
GPR111	222611	broad.mit.edu	37	chr6	47646627	47646627	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgtctgcaggatttatGtgctgtcactgcagtgacac	11	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47646627	A	A	47646627	1	1	19	0	1	0	0	0	0	0	0	0	6693	1392	48	4		4	GPR111	6	47646627	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	79547	47646627	123468440	281	36391											
C6orf138	442213	broad.mit.edu	37	chr6	47976507	47976507	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaagggcttactgcgcaagCagtccttcatggagctggag	15	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47976507	G	G	47976507	3	3	19	1	0	0	0	0	1	0	0	0	2355	710	25	4	1778	4	C6orf138	6	47976507	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	329880	47976507	123138560	282	36392											
MUT	4594	broad.mit.edu	37	chr6	49412454	49412454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcagccaaagcttgatccCtgctggatttgatctatgga	10	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49412454	A	A	49412454	3	1	19	1	0	0	0	0	1	0	0	0	10085	681	24	2	698	2	MUT	6	49412454	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1435947	49412454	121702613	283	36393											
MUT	4594	broad.mit.edu	37	chr6	49425722	49425722	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagggttgtctgaatcataGccacgatgtgtcgccagatc	12	10	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49425722	A	A	49425722	2	1	19	1	0	0	0	0	0	0	0	1	10085	958	34	4		4	MUT	6	49425722	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	13268	49425722	121689345	284	36394											
PKHD1	5314	broad.mit.edu	37	chr6	51768857	51768858	+	Intron	DNP	CC	AA	AA													gtccctgagaacaaaagaccCcattacttgagtatatttta							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	51768858	AA	AA	51768857	1	1	19	0	1	0	0	0	0	0	0	0	12066	638	22	2		2	PKHD1	6	51768857	Intron	DNP	CC	TCGA-05-4420-01A-01D-1265-08	2343135	51768857	119346210	285	36395											
EFHC1	114327	broad.mit.edu	37	chr6	52344532	52344532	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcaccagaagcactcgcGtcaattcagaaccatgtccg	7	13	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52344532	T	T	52344532	2	4	19	1	0	0	0	0	0	0	0	1	4986	1132	40	3		3	EFHC1	6	52344532	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	575675	52344532	118770535	286	36396											
DST	667	broad.mit.edu	37	chr6	56328479	56328479	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggccgggatcttcggcctcGgggtcggaaagcagccatac	15	12	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56328479	C	C	56328479	3	2	19	1	0	0	0	0	1	0	0	0	4823	1124	39	4	629	4	DST	6	56328479	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	3983947	56328479	114786588	287	36397											
DST	667	broad.mit.edu	37	chr6	56507224	56507224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacagactgaagagcatttCcagcaagaatcagtttgtct	8	8	2	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56507224	T	T	56507224	3	4	19	1	0	0	0	0	1	0	0	0	4823	855	30	4	20242	4	DST	6	56507224	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	178745	56507224	114607843	288	36398											
PRIM2	5558	broad.mit.edu	37	chr6	57512590	57512590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccagaaactcctcaacCcaaaccaagtgtccagaaaa	4	15	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512590	A	A	57512590	3	1	19	1	0	0	0	0	1	0	0	0	12597	623	22	2	1468	2	PRIM2	6	57512590	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1005366	57512590	113602477	289	36399											
EYS	346007	broad.mit.edu	37	chr6	66044840	66044840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattataactttttgatatGtgatattatctgctcaaatg	5	4	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66044840	T	T	66044840	1	4	19	0	1	0	0	0	0	0	0	0	5375	1392	48	3		3	EYS	6	66044840	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	8532250	66044840	105070227	290	36400											
BAI3	577	broad.mit.edu	37	chr6	69759195	69759195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgtatttgttcttggcGcagtcctatacaaaaactta	6	9	2	0	rs112866971		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69759195	T	T	69759195	3	4	19	1	0	0	0	0	1	0	0	0	1305	1087	38	3	2340	3	BAI3	6	69759195	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	3714355	69759195	101355872	291	36401											
SH3BGRL2	83699	broad.mit.edu	37	chr6	80383467	80383467	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccggaaaagaaacccactcAgggcaaccccctgccacctc	7	19	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80383467	C	C	80383467	3	2	19	1	0	0	0	0	1	0	0	0	14355	188	7	5	188	5	SH3BGRL2	6	80383467	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	10624272	80383467	90731600	292	36402											
RRAGD	58528	broad.mit.edu	37	chr6	90088977	90088977	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaaattctccagagttGggagttgtggaatcagtttc	11	7	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90088977	A	A	90088977	3	1	19	1	0	0	0	0	1	0	0	0	13786	1348	47	4	493	4	RRAGD	6	90088977	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	9705510	90088977	81026090	293	36403											
CASP8AP2	9994	broad.mit.edu	37	chr6	90572786	90572786	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactctaaggaagttgatgCcatgcatcagtgggaaaata	11	6	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90572786	T	T	90572786	3	4	19	1	0	0	0	0	1	0	0	0	2704	739	26	4	1380	4	CASP8AP2	6	90572786	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	483809	90572786	80542281	294	36404											
PRDM13	59336	broad.mit.edu	37	chr6	100055141	100055142	+	Intron	DNP	GG	AT	AT													acgagagaaagtggaggaagGgagtgattgagtcgttacct							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	100055142	AT	AT	100055141	1	1	19	0	1	0	0	0	0	0	0	0	12560	1247	43	4		4	PRDM13	6	100055141	Intron	DNP	GG	TCGA-05-4420-01A-01D-1265-08	9482355	100055141	71059926	295	36405											
TUBE1	51175	broad.mit.edu	37	chr6	112397335	112397335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttgagggaaaaacattGggagagaagctattaagaag	12	3	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112397335	T	T	112397335	1	4	19	0	1	0	0	0	0	0	0	0	16889	1363	47	2		2	TUBE1	6	112397335	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	12342194	112397335	58717732	296	36406											
TMEM200A	114801	broad.mit.edu	37	chr6	130762171	130762171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaatgggagctcctgtGcctcgagattggcagcaaat	12	9	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130762171	T	T	130762171	3	4	19	1	0	0	0	0	1	0	0	0	16246	1319	46	3	606	3	TMEM200A	6	130762171	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	18364836	130762171	40352896	297	36407											
ENPP3	5169	broad.mit.edu	37	chr6	132006714	132006715	+	Intron	INS	-	T	T													ccactaattctgagaggaagINSttggggttatcagaccctct							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132006715	T	T	132006714	6	5	19	0	1	1	1	0	0	0	0	0	5173	1044	36	0		0	ENPP3	6	132006714	Intron	INS	-	TCGA-05-4420-01A-01D-1265-08	1244543	132006714	39108353	298	36408											
UTRN	7402	broad.mit.edu	37	chr6	144719330	144719330	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaatattctctaatttctgGatgaacctggctttggaagg	10	7	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144719330	C	C	144719330	1	2	19	0	1	0	0	0	0	0	0	0	17230	1189	41	4		4	UTRN	6	144719330	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	12712616	144719330	26395737	299	36409											
WTAP	9589	broad.mit.edu	37	chr6	160176630	160176630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagtgtaaatgtacaggGttcagttttgtaatattttt	8	4	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160176630	T	T	160176630	3	4	19	1	0	0	0	0	1	0	0	0	17536	1261	44	3	1208	3	WTAP	6	160176630	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	15457300	160176630	10938437	300	36410											
SLC22A2	6582	broad.mit.edu	37	chr6	160668334	160668334	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagactcaggtatgcacctaGggtacaaggtgagcggaggg	17	7	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160668334	C	C	160668334	1	2	19	0	1	0	0	0	0	0	0	0	14564	1015	35	4		4	SLC22A2	6	160668334	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	491704	160668334	10446733	301	36411											
PLG	5340	broad.mit.edu	37	chr6	161162462	161162462	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacccaaggtgagataaattCcattgcccacataacgaatt	6	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161162462	A	A	161162462	1	1	19	0	1	0	0	0	0	0	0	0	12181	870	30	3		3	PLG	6	161162462	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	494128	161162462	9952605	302	36412											
IQCE	23288	broad.mit.edu	37	chr7	2618035	2618035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaaggggagggtcctcgGggcagcatctgccagccagc	18	12	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2618035	T	T	2618035	1	4	19	0	1	0	0	0	0	0	0	0	7876	1247	43	2		2	IQCE	7	2618035	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08		2618035	156520628	303	36413											
SDK1	221935	broad.mit.edu	37	chr7	4281522	4281522	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctcaatgtcaagagcacCttctccaagaagaacgggac	8	13	3	3	rs141297041		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4281522	T	T	4281522	2	4	19	1	0	0	0	0	0	0	0	1	14081	668	24	4		4	SDK1	7	4281522	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1663487	4281522	154857141	304	36414											
USP42	84132	broad.mit.edu	37	chr7	6182611	6182611	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagtttgtgaagccggaaCagcttgatggagaaaactcg	13	7	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6182611	G	G	6182611	3	3	19	1	0	0	0	0	1	0	0	0	17200	479	17	4	870	4	USP42	7	6182611	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1901089	6182611	152956052	305	36415											
MEOX2	4223	broad.mit.edu	37	chr7	15666576	15666576	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagacagaattggtaataaCtcatttattcaaacacatgc	7	7	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15666576	T	T	15666576	1	4	19	0	1	0	0	0	0	0	0	0	9567	580	20	4		4	MEOX2	7	15666576	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	9483965	15666576	143472087	306	36416											
ABCB5	340273	broad.mit.edu	37	chr7	20725491	20725491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatcaaccagtttttcctGcatgttttctaattttgatt	6	8	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20725491	T	T	20725491	1	4	19	0	1	0	0	0	0	0	0	0	44	1334	46	3		3	ABCB5	7	20725491	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	5058915	20725491	138413172	307	36417											
DNAH11	8701	broad.mit.edu	37	chr7	21788230	21788230	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggatcttacgaacccctcAgggctgtgctctcttggttg	11	13	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21788230	T	T	21788230	3	4	19	1	0	0	0	0	1	0	0	0	4639	188	7	5	8771	5	DNAH11	7	21788230	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1062739	21788230	137350433	308	36418											
DNAH11	8701	broad.mit.edu	37	chr7	21789974	21789974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatggccagggtgcgactaCagctcaaagtaagaaatact	10	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21789974	A	A	21789974	3	1	19	1	0	0	0	0	1	0	0	0	4639	479	17	3	9168	3	DNAH11	7	21789974	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1744	21789974	137348689	309	36419											
SEPT7	989	broad.mit.edu	37	chr7	35903124	35903124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttaagattgcgtaaagtGggtgagtttaacagatattt	10	2	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35903124	T	T	35903124	1	4	19	0	1	0	0	0	0	0	0	0	14182	1363	47	2		2	SEPT7	7	35903124	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	14113150	35903124	123235539	310	36420											
GLI3	2737	broad.mit.edu	37	chr7	42007443	42007443	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcggtcagaggaagctcgaGcccactgttggaatagttgc	13	9	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42007443	C	C	42007443	3	2	19	1	0	0	0	0	1	0	0	0	6503	971	34	4	2568	4	GLI3	7	42007443	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	6104319	42007443	117131220	311	36421											
DDX56	54606	broad.mit.edu	37	chr7	44611349	44611349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaacctgggggagaaaaCaggcctgtggtcagaaagga	17	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44611349	A	A	44611349	1	1	19	0	1	0	0	0	0	0	0	0	4407	493	17	3		3	DDX56	7	44611349	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2603906	44611349	114527314	312	36422											
TNS3	64759	broad.mit.edu	37	chr7	47479350	47479350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacgacggacactcatccCctgggtgttcacatcagcac	9	14	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47479350	A	A	47479350	1	1	19	0	1	0	0	0	0	0	0	0	16467	638	22	2		2	TNS3	7	47479350	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2868001	47479350	111659313	313	36423											
ABCA13	154664	broad.mit.edu	37	chr7	48559904	48559904	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggccaaggtgggttctgaagGactcatcctcgagctgcact	13	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48559904	C	C	48559904	1	2	19	0	1	0	0	0	0	0	0	0	31	1189	41	4		4	ABCA13	7	48559904	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1080554	48559904	110578759	314	36424											
IKZF1	10320	broad.mit.edu	37	chr7	50444256	50444256	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgttaaagtagagactcaGagtgatgaagagaatgggcg	14	3	1	5			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50444256	A	A	50444256	2	1	19	1	0	0	0	0	0	0	0	1	7684	933	33	4		4	IKZF1	7	50444256	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1884352	50444256	108694407	315	36425											
ZNF716	441234	broad.mit.edu	37	chr7	57529498	57529498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaagaatgtgggaaagCctttaccttctcctcaactc	7	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57529498	A	A	57529498	3	1	19	1	0	0	0	0	1	0	0	0	18247	739	26	3	1345	3	ZNF716	7	57529498	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7085242	57529498	101609165	316	36426											
EIF4H	7458	broad.mit.edu	37	chr7	73609261	73609261	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgatgggatgatcatgGccggttcacaccccgtgggg	15	11	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73609261	C	C	73609261	1	2	19	0	1	0	0	0	0	0	0	0	5081	1218	42	4		4	EIF4H	7	73609261	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	16079763	73609261	85529402	317	36427											
CLIP2	7461	broad.mit.edu	37	chr7	73753444	73753444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggtggggactcgaagGgggctcggacagggtccagc	21	9	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73753444	A	A	73753444	1	1	19	0	1	0	0	0	0	0	0	0	3565	1247	43	4		4	CLIP2	7	73753444	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	144183	73753444	85385219	318	36428											
CD36	948	broad.mit.edu	37	chr7	80276105	80276105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctggggctgtcattggtGctgtcctggctgtgtttgga	16	8	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80276105	T	T	80276105	3	4	19	1	0	0	0	0	1	0	0	0	3037	1319	46	3	51	3	CD36	7	80276105	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	6522661	80276105	78862558	319	36429											
HGF	3082	broad.mit.edu	37	chr7	81335168	81335168	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaatatggcatttacagaGaatgaagtcctgtttcttaa	7	5	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81335168	T	T	81335168	1	4	19	0	1	0	0	0	0	0	0	0	7152	957	33	3		3	HGF	7	81335168	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1059063	81335168	77803495	320	36430											
HGF	3082	broad.mit.edu	37	chr7	81346644	81346644	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggatttcggcagtaattctCattcagcttacttgcatctg	8	9	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81346644	G	G	81346644	3	3	19	1	0	0	0	0	1	0	0	0	7152	835	29	4	909	4	HGF	7	81346644	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	11476	81346644	77792019	321	36431											
HGF	3082	broad.mit.edu	37	chr7	81372293	81372293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggtaggtaaaggataCaggattggaaggtaaggaac	16	2	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81372293	A	A	81372293	1	1	19	0	1	0	0	0	0	0	0	0	7152	493	17	3		3	HGF	7	81372293	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	25649	81372293	77766370	322	36432											
STEAP2	261729	broad.mit.edu	37	chr7	89856415	89856415	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaatttacccctacgacTctttactctctggagagggc	8	11	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89856415	A	A	89856415	3	1	19	1	0	0	0	0	1	0	0	0	15396	1551	54	5	629	5	STEAP2	7	89856415	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	8484122	89856415	69282248	323	36433											
NPTX2	4885	broad.mit.edu	37	chr7	98254413	98254413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctatgcggtgccagggCaggccaacgagatcgtgctg	14	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98254413	A	A	98254413	3	1	19	1	0	0	0	0	1	0	0	0	10698	711	25	3	833	3	NPTX2	7	98254413	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	8397998	98254413	60884250	324	36434											
TRRAP	8295	broad.mit.edu	37	chr7	98478714	98478714	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatgcttcttttcataggCtggttgaactcatggacctg	9	9	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98478714	T	T	98478714	1	4	19	0	1	0	0	0	0	0	0	0	16726	811	28	4		4	TRRAP	7	98478714	5'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	224301	98478714	60659949	325	36435											
AP4M1	9179	broad.mit.edu	37	chr7	99701403	99701403	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgggcacagcggctcacGcctgtagtcccagcactttg	13	14	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99701403	A	A	99701403	1	1	19	0	1	0	0	0	0	0	0	0	755	1102	38	4		4	AP4M1	7	99701403	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1222689	99701403	59437260	326	36436											
MOGAT3	346606	broad.mit.edu	37	chr7	100843503	100843503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcagtttttctgcaggGtgacccatcaccttgacagg	12	10	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100843503	T	T	100843503	1	4	19	0	1	0	0	0	0	0	0	0	9790	1276	44	3		3	MOGAT3	7	100843503	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1142100	100843503	58295160	327	36437											
RELN	5649	broad.mit.edu	37	chr7	103390112	103390112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccctcaaactactaagGgacaagggtaaaaagctctg	9	9	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103390112	T	T	103390112	1	4	19	0	1	0	0	0	0	0	0	0	13328	1247	43	2		2	RELN	7	103390112	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2546609	103390112	55748551	328	36438											
PIK3CG	5294	broad.mit.edu	37	chr7	106523627	106523627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagctcatgctttttcCcagtctaatggctccttaca	8	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106523627	A	A	106523627	1	1	19	0	1	0	0	0	0	0	0	0	12011	638	22	2		2	PIK3CG	7	106523627	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	3133515	106523627	52615036	329	36439											
NRCAM	4897	broad.mit.edu	37	chr7	107878195	107878195	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttatagaaggacacttaCagtcttcaagaagttttgct	7	6	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107878195	A	A	107878195	5	1	19	1	0	0	0	0	0	0	1	0	10739	492	17	3	3935	3	NRCAM	7	107878195	Splice_Site	SNP	C	TCGA-05-4420-01A-01D-1265-08	1354568	107878195	51260468	330	36440											
FLNC	2318	broad.mit.edu	37	chr7	128478674	128478674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggccggcactggcgatGttgctgtggtgatcgtggac	18	9	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128478674	T	T	128478674	3	4	19	1	0	0	0	0	1	0	0	0	5993	1377	48	3	1258	3	FLNC	7	128478674	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	20600479	128478674	30659989	331	36441											
FLNC	2318	broad.mit.edu	37	chr7	128482833	128482833	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcccaactcacagcagtgCccgcttctctgcaggcgacg	11	16	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128482833	T	T	128482833	1	4	19	0	1	0	0	0	0	0	0	0	5993	754	26	4		4	FLNC	7	128482833	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	4159	128482833	30655830	332	36442											
DGKI	9162	broad.mit.edu	37	chr7	137269996	137269996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctggaggcaagtcggGgtttctttccacatggaggt	13	8	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137269996	T	T	137269996	3	4	19	1	0	0	0	0	1	0	0	0	4511	1232	43	2	1759	2	DGKI	7	137269996	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	8787163	137269996	21868667	333	36443											
UBN2	254048	broad.mit.edu	37	chr7	138954223	138954223	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttttgtgccatgcaataAagaaacactagtaaaacgtc	7	8	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138954223	G	G	138954223	3	3	19	1	0	0	0	0	1	0	0	0	17019	14	1	5	1580	5	UBN2	7	138954223	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1684227	138954223	20184440	334	36444											
UBN2	254048	broad.mit.edu	37	chr7	138978325	138978325	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgaagattatagttttttTttttttttttaagaaatgca	5	1	0	3	rs142379257	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138978325	G	G	138978325	1	3	19	0	1	0	0	0	0	0	0	0	17019	1856	64	5		5	UBN2	7	138978325	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	24102	138978325	20160338	335	36445											
DENND2A	27147	broad.mit.edu	37	chr7	140273808	140273808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggtttggacaatgactGctgtgaaggaaaaggagaaa	14	4	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140273808	T	T	140273808	3	4	19	1	0	0	0	0	1	0	0	0	4469	1333	46	3	1843	3	DENND2A	7	140273808	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1295483	140273808	18864855	336	36446											
TRYX3	136541	broad.mit.edu	37	chr7	141957559	141957559	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcccagtttagctccagtCtctggaaaactgggaagaga	11	9	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141957559	G	G	141957559	1	3	19	0	1	0	0	0	0	0	0	0	16729	928	32	4		4	TRYX3	7	141957559	5'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	1683751	141957559	17181104	337	36447											
EPHB6	2051	broad.mit.edu	37	chr7	142568375	142568375	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccattggactggagtgctAccaggacaacttctccaagt	10	11	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142568375	T	T	142568375	3	4	19	1	0	0	0	0	1	0	0	0	5220	391	14	5	2952	5	EPHB6	7	142568375	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	610816	142568375	16570288	338	36448											
TRPV5	56302	broad.mit.edu	37	chr7	142627208	142627208	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctctggggcagcctccatCagcaccaaggccgcctccaa	10	17	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142627208	A	A	142627208	2	1	19	1	0	0	0	0	0	0	0	1	16724	813	29	3		3	TRPV5	7	142627208	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	58833	142627208	16511455	339	36449											
CASP2	835	broad.mit.edu	37	chr7	142988654	142988654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattgggagtgtgtggcatGcatcctcatcatcaggaaac	11	8	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142988654	T	T	142988654	3	4	19	1	0	0	0	0	1	0	0	0	2697	1319	46	3	102	3	CASP2	7	142988654	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	361446	142988654	16150009	340	36450											
CLCN1	1180	broad.mit.edu	37	chr7	143039535	143039535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagcttcttacacatatGgggagttgcgaaccctgctc	9	11	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143039535	T	T	143039535	3	4	19	1	0	0	0	0	1	0	0	0	3493	1348	47	2	1929	2	CLCN1	7	143039535	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	50881	143039535	16099128	341	36451											
CLCN1	1180	broad.mit.edu	37	chr7	143039586	143039586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcaagactttaccactgGttgactcaaaaggtcagtgg	10	9	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143039586	T	T	143039586	3	4	19	1	0	0	0	0	1	0	0	0	3493	1261	44	3	1980	3	CLCN1	7	143039586	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	51	143039586	16099077	342	36452											
FAM131B	9715	broad.mit.edu	37	chr7	143053910	143053910	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaggctccagagcagaGtatcctgaagctggttggga	17	7	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143053910	A	A	143053910	2	1	19	1	0	0	0	0	0	0	0	1	5486	1024	36	4		4	FAM131B	7	143053910	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	14324	143053910	16084753	343	36453											
FAM131B	9715	broad.mit.edu	37	chr7	143056061	143056061	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatcatgtgggccacccGgccttgccccatggctgtgg	12	15	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143056061	C	C	143056061	3	2	19	1	0	0	0	0	1	0	0	0	5486	1115	39	4	769	4	FAM131B	7	143056061	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2151	143056061	16082602	344	36454											
FAM115A	9747	broad.mit.edu	37	chr7	143573331	143573331	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaggcatcaatacagtaaAcccccagggagtctttcact	8	11	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143573331	G	G	143573331	3	3	19	1	0	0	0	0	1	0	0	0	5451	43	2	5	2426	5	FAM115A	7	143573331	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	517270	143573331	15565332	345	36455											
GIMAP7	168537	broad.mit.edu	37	chr7	150210471	150210471	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataggtcctcaagagttgtCttgctgaaccataggccata	9	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150210471	A	A	150210471	1	1	19	0	1	0	0	0	0	0	0	0	6448	928	32	3		3	GIMAP7	7	150210471	5'Flank	SNP	C	TCGA-05-4420-01A-01D-1265-08	6637140	150210471	8928192	346	36456											
RHEB	6009	broad.mit.edu	37	chr7	151200591	151200591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaccctccagcatccaaCccaagaagcatacccatggt	5	18	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151200591	A	A	151200591	1	1	19	0	1	0	0	0	0	0	0	0	13437	522	18	3		3	RHEB	7	151200591	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	990120	151200591	7938072	347	36457											
ESYT2	57488	broad.mit.edu	37	chr7	158534100	158534100	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttaacctaagattaggcctCcctccccaaagcatgccggc	8	15	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158534100	G	G	158534100	1	3	19	0	1	0	0	0	0	0	0	0	5307	870	30	4		4	ESYT2	7	158534100	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	7333509	158534100	604563	348	36458											
CSMD1	64478	broad.mit.edu	37	chr8	3165024	3165024	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattttggctttactatataGaacttaattaatggtttcaa	5	5	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3165024	T	T	3165024	1	4	19	0	1	0	0	0	0	0	0	0	3978	957	33	3		3	CSMD1	8	3165024	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08		3165024	143198998	349	36459											
DDHD2	23259	broad.mit.edu	37	chr8	38103232	38103232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaagtgtatttaggtttcCtgcttatattatttttcctt	5	5	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38103232	A	A	38103232	1	1	19	0	1	0	0	0	0	0	0	0	4360	696	24	2		2	DDHD2	8	38103232	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	34938208	38103232	108260790	350	36460											
POLB	5423	broad.mit.edu	37	chr8	42213036	42213036	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttatcttctatacagatCtcagaaaaaatgaagataaa	4	5	3	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42213036	T	T	42213036	3	4	19	1	0	0	0	0	1	0	0	0	12284	913	32	4	399	4	POLB	8	42213036	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	4109804	42213036	104150986	351	36461											
DKK4	27121	broad.mit.edu	37	chr8	42232264	42232264	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgaaataaaatatgctgcGaatgctgttcttacccttcc	6	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42232264	A	A	42232264	1	1	19	0	1	0	0	0	0	0	0	0	4587	1073	37	4		4	DKK4	8	42232264	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	19228	42232264	104131758	352	36462											
KIAA0146	23514	broad.mit.edu	37	chr8	48309166	48309166	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaggactccagaaaattcAgcaaagaagaagcttttaag	8	9	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48309166	T	T	48309166	2	4	19	1	0	0	0	0	0	0	0	1	8227	175	7	5		5	KIAA0146	8	48309166	Silent	SNP	A	TCGA-05-4420-01A-01D-1265-08	6076902	48309166	98054856	353	36463											
PXDNL	137902	broad.mit.edu	37	chr8	52320781	52320781	+	Frame_Shift_Del	DEL	C	-	-													gatggtggcagccgaatccaCggccgcagaataagccgcgg							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52320781	-	-	52320781	7	5	19	1	0	1	0	1	0	0	0	0	12956	536	19	0	1016	0	PXDNL	8	52320781	Frame_Shift_Del	DEL	C	TCGA-05-4420-01A-01D-1265-08	4011615	52320781	94043241	354	36464											
CYP7A1	1581	broad.mit.edu	37	chr8	59412672	59412672	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcattttgcaaatctaggCcaaaatctctgaggaagaaa	7	8	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59412672	A	A	59412672	1	1	19	0	1	0	0	0	0	0	0	0	4229	754	26	3		3	CYP7A1	8	59412672	5'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	7091891	59412672	86951350	355	36465											
CHD7	55636	broad.mit.edu	37	chr8	61769148	61769149	+	Missense_Mutation	DNP	GG	TT	TT													ctcaggtggtctcagaaaatGgacaagaaaaagttgtagat							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	61769149	TT	TT	61769148	3	4	19	1	0	0	0	0	1	0	0	0	3361	1349	47	2	7439	2	CHD7	8	61769148	Missense_Mutation	DNP	GG	TCGA-05-4420-01A-01D-1265-08	2356476	61769148	84594874	356	36466											
ZFHX4	79776	broad.mit.edu	37	chr8	77776623	77776624	+	Frame_Shift_Del	DEL	TG	-	-													ttcaacggttacctcaagttTgtgcagcacctcaggggttc							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77776624	-	-	77776623	7	5	19	1	0	1	0	1	0	0	0	0	17761	1821	63	0	10711	0	ZFHX4	8	77776623	Frame_Shift_Del	DEL	TG	TCGA-05-4420-01A-01D-1265-08	16007475	77776623	68587399	357	36467											
ATP6V0D2	245972	broad.mit.edu	37	chr8	87111177	87111177	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaggactacagagctgttTcaccctaccttggcttcaat	7	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87111177	G	G	87111177	1	3	19	0	1	0	0	0	0	0	0	0	1178	1798	62	5		5	ATP6V0D2	8	87111177	5'UTR	SNP	T	TCGA-05-4420-01A-01D-1265-08	9334554	87111177	59252845	358	36468											
NECAB1	64168	broad.mit.edu	37	chr8	91937876	91937876	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccctcagtttaatgtcaGcggtccaggtaacataccct	8	13	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91937876	A	A	91937876	3	1	19	1	0	0	0	0	1	0	0	0	10399	971	34	4	634	4	NECAB1	8	91937876	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	4826699	91937876	54426146	359	36469											
GDF6	392255	broad.mit.edu	37	chr8	97172982	97172982	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaggacgcgcggggcaCggagcggctggacagcggcc	21	13	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97172982	T	T	97172982	1	4	19	1	0	0	0	0	0	0	0	0	6381	551	19	4		4	GDF6	8	97172982	Translation_Start_Site	SNP	C	TCGA-05-4420-01A-01D-1265-08	5235106	97172982	49191040	360	36470											
RIMS2	9699	broad.mit.edu	37	chr8	104581002	104581002	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtaaggaatctatcaaaaCatgaatgtcttttgctgttt	9	5	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104581002	T	T	104581002	1	4	19	0	1	0	0	0	0	0	0	0	13479	493	17	4		4	RIMS2	8	104581002	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	7408020	104581002	41783020	361	36471											
ABRA	137735	broad.mit.edu	37	chr8	107782551	107782551	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgacgatggaaactatGtgaagcatttcttgccaaga	10	6	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107782551	A	A	107782551	1	1	19	0	1	0	0	0	0	0	0	0	100	1392	48	4		4	ABRA	8	107782551	5'Flank	SNP	G	TCGA-05-4420-01A-01D-1265-08	3201549	107782551	38581471	362	36472											
RSPO2	340419	broad.mit.edu	37	chr8	109001582	109001582	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttctgctatactcacataGaaatactaaataaaatatcc	2	9	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109001582	T	T	109001582	1	4	19	0	1	0	0	0	0	0	0	0	13821	957	33	3		3	RSPO2	8	109001582	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1219031	109001582	37362440	363	36473											
CSMD3	114788	broad.mit.edu	37	chr8	114326757	114326757	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataaactacttttacccAggaaatattttctctccagt	3	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114326757	G	G	114326757	1	3	19	0	1	0	0	0	0	0	0	0	3980	203	7	5		5	CSMD3	8	114326757	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	5325175	114326757	32037265	364	36474											
COL14A1	7373	broad.mit.edu	37	chr8	121240845	121240845	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcatgtttgttgtgggagGcaagtgagataatataggtg	15	2	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121240845	A	A	121240845	1	1	19	0	1	0	0	0	0	0	0	0	3703	1218	42	4		4	COL14A1	8	121240845	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	6914088	121240845	25123177	365	36475											
WDYHV1	55093	broad.mit.edu	37	chr8	124448859	124448859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgaggacattcaagatGgatttacttattttctgaag	11	4	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124448859	T	T	124448859	1	4	19	0	1	0	0	0	0	0	0	0	17470	1363	47	2		2	WDYHV1	8	124448859	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3208014	124448859	21915163	366	36476											
FAM135B	51059	broad.mit.edu	37	chr8	139263164	139263164	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtggaaatagtcgaacatGaccgggacctggtggtgcag	16	7	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139263164	T	T	139263164	2	4	19	1	0	0	0	0	0	0	0	1	5495	1277	45	3		3	FAM135B	8	139263164	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	14814305	139263164	7100858	367	36477											
COL22A1	169044	broad.mit.edu	37	chr8	139691882	139691882	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacacattgccctcccagtGcacagttttctgaccctctg	6	15	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139691882	C	C	139691882	3	2	19	1	0	0	0	0	1	0	0	0	3713	1319	46	4	1934	4	COL22A1	8	139691882	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	428718	139691882	6672140	368	36478											
COL22A1	169044	broad.mit.edu	37	chr8	139697353	139697353	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatttcattggccacggttCaatttctgcaaagtttggca	8	10	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139697353	T	T	139697353	1	4	19	0	1	0	0	0	0	0	0	0	3713	841	29	4		4	COL22A1	8	139697353	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	5471	139697353	6666669	369	36479											
CYP11B1	1584	broad.mit.edu	37	chr8	143956360	143956360	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggcccctccccagccCgggcctgctcacatggtgca	11	20	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143956360	A	A	143956360	1	1	19	0	1	0	0	0	0	0	0	0	4178	667	23	1		1	CYP11B1	8	143956360	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	4259007	143956360	2407662	370	36480											
TOP1MT	116447	broad.mit.edu	37	chr8	144403622	144403634	+	Intron	DEL	CACACACGCACGC	-	-													cgccacacacacgcacgccaCacacacgcacgccacacacg					rs62524730	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144403634	-	-	144403622	6	5	19	0	1	1	0	1	0	0	0	0	16488	493	17	0		0	TOP1MT	8	144403622	Intron	DEL	CACACACGCACGC	TCGA-05-4420-01A-01D-1265-08	447262	144403622	1960400	371	36481											
NAPRT1	93100	broad.mit.edu	37	chr8	144657383	144657383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgctggaggcagagcCgcagtagtggctccacctgg	15	13	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144657383	A	A	144657383	3	1	19	1	0	0	0	0	1	0	0	0	10259	652	23	1	204	1	NAPRT1	8	144657383	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	253761	144657383	1706639	372	36482											
MFSD3	113655	broad.mit.edu	37	chr8	145735969	145735969	+	Intron	DEL	C	-	-													ctatactgacccatttcccaCccccatcccaggaaactgct							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145735969	-	-	145735969	6	5	19	0	1	1	0	1	0	0	0	0	9625	522	18	0		0	MFSD3	8	145735969	Intron	DEL	C	TCGA-05-4420-01A-01D-1265-08	1078586	145735969	628053	373	36483											
KDM4C	23081	broad.mit.edu	37	chr9	6887885	6887885	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtaagaacactagaacTtacacattaaaaaacctatt	3	8	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6887885	C	C	6887885	1	2	19	0	1	0	0	0	0	0	0	0	8200	1624	56	5		5	KDM4C	9	6887885	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08		6887885	134325546	374	36484											
BNC2	54796	broad.mit.edu	37	chr9	16552886	16552886	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctacacatgaatgttcgcCataggtgtttaagcaagatc	8	8	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16552886	T	T	16552886	1	4	19	0	1	0	0	0	0	0	0	0	1481	609	21	4		4	BNC2	9	16552886	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	9665001	16552886	124660545	375	36485											
IFNA14	3448	broad.mit.edu	37	chr9	21209348	21209348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggattccctggaagtaccTcctcaaggccagtgtagggc	12	11	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21209348	A	A	21209348	1	1	19	0	1	0	0	0	0	0	0	0	7604	1566	54	5		5	IFNA14	9	21209348	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	4656462	21209348	120004083	376	36486											
IFNA16	3449	broad.mit.edu	37	chr9	21216810	21216810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatttctgctctgacaacCtcccaggcacaagggctgta	9	12	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21216810	A	A	21216810	3	1	19	1	0	0	0	0	1	0	0	0	7605	680	24	2	78	2	IFNA16	9	21216810	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7462	21216810	119996621	377	36487											
PGM5	5239	broad.mit.edu	37	chr9	71002378	71002378	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttgtttttctatctttaGtggagatagtggacccagtg	10	7	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71002378	A	A	71002378	5	1	19	1	0	0	0	0	0	0	1	0	11896	1043	36	4	585	4	PGM5	9	71002378	Splice_Site	SNP	G	TCGA-05-4420-01A-01D-1265-08	49785568	71002378	70211053	378	36488											
TJP2	9414	broad.mit.edu	37	chr9	71869204	71869204	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttatggcagtgatgccgagGaggaggagtaccgccagcag	17	8	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71869204	T	T	71869204	4	4	19	1	0	0	0	0	0	1	0	0	16053	1175	41	3	3836	3	TJP2	9	71869204	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	866826	71869204	69344227	379	36489											
TMC1	117531	broad.mit.edu	37	chr9	75263629	75263629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacactatgtctttctgagaGgtataaaggtatttgaaaac	9	5	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75263629	A	A	75263629	1	1	19	0	1	0	0	0	0	0	0	0	16107	1015	35	4		4	TMC1	9	75263629	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3394425	75263629	65949802	380	36490											
S1PR3	1903	broad.mit.edu	37	chr9	91616344	91616344	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaaccgcatgtactttTtcattggcaacctggctctc	6	13	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91616344	C	C	91616344	3	2	19	1	0	0	0	0	1	0	0	0	13906	1841	64	5	231	5	S1PR3	9	91616344	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	16352715	91616344	49597087	381	36491											
SLC35D2	11046	broad.mit.edu	37	chr9	99114336	99114336	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcacccaagtatgatggtttCcagaagtaaggtaagtggaa	11	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99114336	T	T	99114336	3	4	19	1	0	0	0	0	1	0	0	0	14696	864	30	4	642	4	SLC35D2	9	99114336	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7497992	99114336	42099095	382	36492											
CTSL2	1515	broad.mit.edu	37	chr9	99797169	99797170	+	Intron	DNP	CA	AT	AT													gggtgagaagctccaagcgaCatgtgacagtaacccaccct							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	99797170	AT	AT	99797169	1	1	19	0	1	0	0	0	0	0	0	0	4073	493	17	3		3	CTSL2	9	99797169	Intron	DNP	CA	TCGA-05-4420-01A-01D-1265-08	682833	99797169	41416262	383	36493											
NANS	54187	broad.mit.edu	37	chr9	100839261	100839261	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagttggatctggagacaCtaataattttccttatctgg	8	7	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100839261	T	T	100839261	3	4	19	1	0	0	0	0	1	0	0	0	10249	565	20	4	420	4	NANS	9	100839261	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1042092	100839261	40374170	384	36494											
SVEP1	79987	broad.mit.edu	37	chr9	113261349	113261349	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagctgcctgaactccgacAttccattttccagaagtggt	8	12	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113261349	T	T	113261349	3	4	19	1	0	0	0	0	1	0	0	0	15538	214	8	5	9230	5	SVEP1	9	113261349	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	12422088	113261349	27952082	385	36495											
ALAD	210	broad.mit.edu	37	chr9	116152888	116152888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacctgccttggcatacgCcaatgccacctcagccagcc	7	19	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116152888	A	A	116152888	3	1	19	1	0	0	0	0	1	0	0	0	483	739	26	3	554	3	ALAD	9	116152888	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2891539	116152888	25060543	386	36496											
RGS3	5998	broad.mit.edu	37	chr9	116267776	116267776	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcaccatctgctgcgactctCcagttcgagtccaggccgtg	10	15	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116267776	G	G	116267776	3	3	19	1	0	0	0	0	1	0	0	0	13415	855	30	4	1135	4	RGS3	9	116267776	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	114888	116267776	24945655	387	36497											
ZNF618	114991	broad.mit.edu	37	chr9	116812463	116812463	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttaagacttgacttcggggGaaaaaaaaagaaaaagagaa	10	3	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116812463	A	A	116812463	1	1	19	0	1	0	0	0	0	0	0	0	18169	1189	41	4		4	ZNF618	9	116812463	3'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	544687	116812463	24400968	388	36498											
ASTN2	23245	broad.mit.edu	37	chr9	119188076	119188076	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccaggatccaggagaatActgctccccctcccatggag	10	16	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119188076	G	G	119188076	1	3	19	0	1	0	0	0	0	0	0	0	1069	406	14	5		5	ASTN2	9	119188076	3'UTR	SNP	A	TCGA-05-4420-01A-01D-1265-08	2375613	119188076	22025355	389	36499											
ASTN2	23245	broad.mit.edu	37	chr9	119568148	119568148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcacatcctgaatgcccCcattgggggtgacctaaaac	9	13	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119568148	A	A	119568148	1	1	19	0	1	0	0	0	0	0	0	0	1069	638	22	2		2	ASTN2	9	119568148	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	380072	119568148	21645283	390	36500											
C5	727	broad.mit.edu	37	chr9	123778413	123778413	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacattttatacaggtgagtTatgtagtcttggcattctaa	8	5	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123778413	A	A	123778413	1	1	19	0	1	0	0	0	0	0	0	0	2303	1769	61	5		5	C5	9	123778413	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	4210265	123778413	17435018	391	36501											
OR1L3	26735	broad.mit.edu	37	chr9	125437724	125437724	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagatgtatttcttcctgGtttttggaaacatagatagt	8	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125437724	A	A	125437724	3	1	19	1	0	0	0	0	1	0	0	0	11058	1261	44	4	318	4	OR1L3	9	125437724	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1659311	125437724	15775707	392	36502											
WDR34	89891	broad.mit.edu	37	chr9	131396070	131396070	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccaggtcctcagcttcccGgggcccttgttccgtgaact	11	15	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131396070	A	A	131396070	3	1	19	1	0	0	0	0	1	0	0	0	17415	1115	39	4	50	4	WDR34	9	131396070	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	5958346	131396070	9817361	393	36503											
COL5A1	1289	broad.mit.edu	37	chr9	137681070	137681070	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggtaaggatagcctggCccctgggcaggcagcttgtt	16	10	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137681070	T	T	137681070	1	4	19	0	1	0	0	0	0	0	0	0	3728	754	26	4		4	COL5A1	9	137681070	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6285000	137681070	3532361	394	36504											
PNPLA7	375775	broad.mit.edu	37	chr9	140395109	140395109	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggcagggggggctggGgcccgccctgaggtcctggc	20	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140395109	C	C	140395109	1	2	19	0	1	0	0	0	0	0	0	0	12265	1247	43	4		4	PNPLA7	9	140395109	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2714039	140395109	818322	395	36505											
EHMT1	79813	broad.mit.edu	37	chr9	140674015	140674015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggggagatgtccgccgGgccttccagccttcagcttc	14	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140674015	T	T	140674015	1	4	19	0	1	0	0	0	0	0	0	0	5023	1247	43	2		2	EHMT1	9	140674015	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	278906	140674015	539416	396	36506											
ZMYND11	10771	broad.mit.edu	37	chr10	225956	225956	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagtaaacaggtcatgGcacgtttaacaaaaagacga	9	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225956	A	A	225956	3	1	19	1	0	0	0	0	1	0	0	0	17832	1203	42	4	6	4	ZMYND11	10	225956	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08		225956	135308791	397	36507											
PRKCQ	5588	broad.mit.edu	37	chr10	6504417	6504417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctttttctgacatgctGtgtatggctaaatggcatac	9	8	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6504417	T	T	6504417	1	4	19	0	1	0	0	0	0	0	0	0	12621	1392	48	3		3	PRKCQ	10	6504417	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	6278461	6504417	129030330	398	36508											
ITIH5	80760	broad.mit.edu	37	chr10	7611609	7611609	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggtccttgcccagatgcTgcagcggaaggtagaactta	12	11	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7611609	G	G	7611609	1	3	19	0	1	0	0	0	0	0	0	0	7977	1595	55	5		5	ITIH5	10	7611609	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1107192	7611609	127923138	399	36509											
GATA3	2625	broad.mit.edu	37	chr10	8115980	8115980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcatggtcaccgccatGggttagagccctgctcgatg	12	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8115980	T	T	8115980	3	4	19	1	0	0	0	0	1	0	0	0	6317	1348	47	2	1347	2	GATA3	10	8115980	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	504371	8115980	127418767	400	36510											
PHYH	5264	broad.mit.edu	37	chr10	13325587	13325587	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttaaaatgttaatgcaaTttaattaaaattttattcaa	2	3	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13325587	G	G	13325587	1	3	19	0	1	0	0	0	0	0	0	0	11959	1508	52	5		5	PHYH	10	13325587	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	5209607	13325587	122209160	401	36511											
FAM171A1	221061	broad.mit.edu	37	chr10	15254716	15254716	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttgcaggggcgacatcCgccaaagtcatcctttattc	8	14	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15254716	A	A	15254716	1	1	19	0	1	0	0	0	0	0	0	0	5535	667	23	1		1	FAM171A1	10	15254716	3'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	1929129	15254716	120280031	402	36512											
SLC39A12	221074	broad.mit.edu	37	chr10	18254567	18254567	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccttccccagactacttTacagaatatattttcagttc	4	11	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18254567	C	C	18254567	2	2	19	1	0	0	0	0	0	0	0	1	14729	1751	61	5		5	SLC39A12	10	18254567	Silent	SNP	T	TCGA-05-4420-01A-01D-1265-08	2999851	18254567	117280180	403	36513											
THNSL1	79896	broad.mit.edu	37	chr10	25313947	25313947	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcgattagaaagtcagcatCatttccagatagaaaaggct	8	7	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25313947	T	T	25313947	3	4	19	1	0	0	0	0	1	0	0	0	15985	826	29	4	1797	4	THNSL1	10	25313947	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7059380	25313947	110220800	404	36514											
MYO3A	53904	broad.mit.edu	37	chr10	26443669	26443669	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcactgtcttccttggtctCcttagggcgacactggagaa	10	11	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26443669	T	T	26443669	1	4	19	0	1	0	0	0	0	0	0	0	10170	870	30	4		4	MYO3A	10	26443669	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1129722	26443669	109091078	405	36515											
ZNF239	8187	broad.mit.edu	37	chr10	44052539	44052539	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtgcaggtttgagcgcTgactgaagctcataccacac	12	10	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44052539	C	C	44052539	3	2	19	1	0	0	0	0	1	0	0	0	17917	1580	55	5	391	5	ZNF239	10	44052539	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	17608870	44052539	91482208	406	36516											
RBP3	5949	broad.mit.edu	37	chr10	48389941	48389941	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggccagggctttctccaGggcctgctcggccggagtcc	15	14	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48389941	A	A	48389941	2	1	19	1	0	0	0	0	0	0	0	1	13265	991	35	4		4	RBP3	10	48389941	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	4337402	48389941	87144806	407	36517											
FRMPD2	143162	broad.mit.edu	37	chr10	49430250	49430250	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actccaatctagctggtagaTgctaacaatactcaaagcag	7	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49430250	A	A	49430250	1	1	19	0	1	0	0	0	0	0	0	0	6118	1479	51	5		5	FRMPD2	10	49430250	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1040309	49430250	86104497	408	36518											
PCDH15	65217	broad.mit.edu	37	chr10	56106373	56106373	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcccacaaccacaaacTgaagtgtttcaaaagaacag	8	11	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56106373	C	C	56106373	1	2	19	0	1	0	0	0	0	0	0	0	11605	1595	55	5		5	PCDH15	10	56106373	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	6676123	56106373	79428374	409	36519											
UBE2D1	7321	broad.mit.edu	37	chr10	60124575	60124575	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catccaaacataaacagtaaTggaagtatttgtctcgatat	6	7	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60124575	C	C	60124575	2	2	19	1	0	0	0	0	0	0	0	1	16974	1461	51	5		5	UBE2D1	10	60124575	Silent	SNP	T	TCGA-05-4420-01A-01D-1265-08	4018202	60124575	75410172	410	36520											
RHOBTB1	9886	broad.mit.edu	37	chr10	62645707	62645707	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccaaaccctcaagcactActaaggagcaatagctcctt	6	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62645707	G	G	62645707	1	3	19	0	1	0	0	0	0	0	0	0	13442	406	14	5		5	RHOBTB1	10	62645707	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	2521132	62645707	72889040	411	36521											
CTNNA3	29119	broad.mit.edu	37	chr10	69366816	69366816	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtggtaacctaaaattGgaaaaatacaaagtactaaa	7	4	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69366816	A	A	69366816	1	1	19	0	1	0	0	0	0	0	0	0	4048	1363	47	4		4	CTNNA3	10	69366816	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	6721109	69366816	66167931	412	36522											
SUPV3L1	6832	broad.mit.edu	37	chr10	70951419	70951419	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctttctagggtgtgccAtgtgacttggtgacaggtga	14	7	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70951419	T	T	70951419	2	4	19	1	0	0	0	0	0	0	0	1	15520	204	8	5		5	SUPV3L1	10	70951419	Silent	SNP	A	TCGA-05-4420-01A-01D-1265-08	1584603	70951419	64583328	413	36523											
ADAMTS14	140766	broad.mit.edu	37	chr10	72491972	72491972	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcctgcctcacctgccctCcacctcgctctccacctttt	4	21	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72491972	A	A	72491972	1	1	19	0	1	0	0	0	0	0	0	0	259	870	30	3		3	ADAMTS14	10	72491972	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1540553	72491972	63042775	414	36524											
ADAMTS14	140766	broad.mit.edu	37	chr10	72491985	72491985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctccacctcgctctcCaccttttctttctctcttcg	3	20	4	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72491985	A	A	72491985	1	1	19	0	1	0	0	0	0	0	0	0	259	609	21	2		2	ADAMTS14	10	72491985	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	13	72491985	63042762	415	36525											
PSAP	5660	broad.mit.edu	37	chr10	73590756	73590756	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attctggatgtcaaattgtaGcaaaatgctgttgaggaatt	10	4	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73590756	C	C	73590756	1	2	19	0	1	0	0	0	0	0	0	0	12749	986	34	4		4	PSAP	10	73590756	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1098771	73590756	61943991	416	36526											
GRID1	2894	broad.mit.edu	37	chr10	87406923	87406923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaccaccccgtggccctgtTacagtgcacgtgcccaagcg	11	16	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87406923	C	C	87406923	1	2	19	0	1	0	0	0	0	0	0	0	6837	1769	61	5		5	GRID1	10	87406923	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	13816167	87406923	48127824	417	36527											
PLCE1	51196	broad.mit.edu	37	chr10	96053177	96053177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccaagggagtagtaggaCttcaaaataaatattaatgg	10	4	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96053177	A	A	96053177	1	1	19	0	1	0	0	0	0	0	0	0	12129	580	20	3		3	PLCE1	10	96053177	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	8646254	96053177	39481570	418	36528											
PI4K2A	55361	broad.mit.edu	37	chr10	99371248	99371248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatttctcagtctcttctAacaggccctgctttgcaggt	7	12	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99371248	T	T	99371248	1	4	19	0	1	0	0	0	0	0	0	0	11966	377	13	5		5	PI4K2A	10	99371248	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	3318071	99371248	36163499	419	36529											
PKD2L1	9033	broad.mit.edu	37	chr10	102058641	102058641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctttagaatgacctttgCcctcatcctctgactcccca	4	16	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102058641	A	A	102058641	1	1	19	0	1	0	0	0	0	0	0	0	12062	754	26	3		3	PKD2L1	10	102058641	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2687393	102058641	33476106	420	36530											
MGEA5	10724	broad.mit.edu	37	chr10	103560073	103560073	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagagccatctgtggactaTagagtacatcagtttcaata	8	7	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103560073	C	C	103560073	3	2	19	1	0	0	0	0	1	0	0	0	9648	1406	49	5	1665	5	MGEA5	10	103560073	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	1501432	103560073	31974674	421	36531											
SORCS3	22986	broad.mit.edu	37	chr10	107005445	107005445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagccctgaaaattgttctGtgatgctccttcccgctcag	8	12	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107005445	T	T	107005445	1	4	19	0	1	0	0	0	0	0	0	0	15046	1392	48	3		3	SORCS3	10	107005445	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3445372	107005445	28529302	422	36532											
NRAP	4892	broad.mit.edu	37	chr10	115374527	115374527	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacaggcaaaagaaggcagGagttacgggcaaaaggagtg	15	7	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115374527	T	T	115374527	1	4	19	0	1	0	0	0	0	0	0	0	10733	1189	41	3		3	NRAP	10	115374527	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	8369082	115374527	20160220	423	36533											
SLC18A2	6571	broad.mit.edu	37	chr10	119013909	119013909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgactatttctttcccTgtgtagggatgggcatgctt	11	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119013909	A	A	119013909	1	1	19	0	1	0	0	0	0	0	0	0	14539	1595	55	5		5	SLC18A2	10	119013909	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	3639382	119013909	16520838	424	36534											
SLC18A2	6571	broad.mit.edu	37	chr10	119015285	119015285	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagaaatgttgggctataTaaaaaaacagaaaaggcaaa	9	4	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119015285	C	C	119015285	1	2	19	0	1	0	0	0	0	0	0	0	14539	1421	49	5		5	SLC18A2	10	119015285	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1376	119015285	16519462	425	36535											
CPXM2	119587	broad.mit.edu	37	chr10	125557674	125557674	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgggagaaaaggaaaatcTtttagtgcttaattaccaag	9	5	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125557674	A	A	125557674	1	1	19	0	1	0	0	0	0	0	0	0	3870	1624	56	5		5	CPXM2	10	125557674	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	6542389	125557674	9977073	426	36536											
FAM175B	23172	broad.mit.edu	37	chr10	126490204	126490204	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcgtgtcgggagcgacacCcctgcggaggatacggtgcc	17	12	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126490204	T	T	126490204	1	4	19	0	1	0	0	0	0	0	0	0	5543	638	22	4		4	FAM175B	10	126490204	5'Flank	SNP	C	TCGA-05-4420-01A-01D-1265-08	932530	126490204	9044543	427	36537											
TUBGCP2	10844	broad.mit.edu	37	chr10	135103496	135103496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccacagggagcgcttcGgtcacaggcaaagcaagggc	13	11	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135103496	T	T	135103496	1	4	19	0	1	0	0	0	0	0	0	0	16892	1131	39	1		1	TUBGCP2	10	135103496	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	8613292	135103496	431251	428	36538											
CALY	50632	broad.mit.edu	37	chr10	135140380	135140380	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagagccctggcccccttAcccgcagcaggaagccgtcg	11	18	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135140380	G	G	135140380	5	3	19	1	0	0	0	0	0	0	1	0	2621	405	14	5	299	5	CALY	10	135140380	Splice_Site	SNP	A	TCGA-05-4420-01A-01D-1265-08	36884	135140380	394367	429	36539											
PAOX	196743	broad.mit.edu	37	chr10	135202736	135202736	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcagtaacagttcttaCctccgaggaactgaaatgac	11	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135202736	G	G	135202736	1	3	19	0	1	0	0	0	0	0	0	0	11517	522	18	4		4	PAOX	10	135202736	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	62356	135202736	332011	430	36540											
NLRP6	171389	broad.mit.edu	37	chr11	278724	278724	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccccaccctcactccCaggctcaggagccaagcact	6	21	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	278724	G	G	278724	1	3	19	0	1	0	0	0	0	0	0	0	10576	609	21	4		4	NLRP6	11	278724	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08		278724	134727792	431	36541											
NLRP6	171389	broad.mit.edu	37	chr11	280839	280839	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccgggatgagaggagggccGagcgcgcctaccgcttcgtg	17	12	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	280839	C	C	280839	3	2	19	1	0	0	0	0	1	0	0	0	10576	1059	37	4	1119	4	NLRP6	11	280839	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2115	280839	134725677	432	36542											
RNH1	6050	broad.mit.edu	37	chr11	500626	500626	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctgatgtccttgcaccGtgcttccgtgaggccacagt	12	12	0	3	rs149360262		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	500626	T	T	500626	2	4	19	1	0	0	0	0	0	0	0	1	13615	1144	40	3		3	RNH1	11	500626	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	219787	500626	134505890	433	36543											
HRAS	3265	broad.mit.edu	37	chr11	533874	533874	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatggcgctgtactcctccTggccggcggtatccaggatg	14	13	0	0	rs121913233		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	533874	A	A	533874	3	1	19	1	0	0	0	0	1	0	0	0	7415	1580	55	5	466	5	HRAS	11	533874	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	33248	533874	134472642	434	36544											
MUC5B	727897	broad.mit.edu	37	chr11	1213453	1213453	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgggtcaggtggtgcagTgcagccgtgaagagggcctg	18	9	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1213453	A	A	1213453	1	1	19	0	1	0	0	0	0	0	0	0	10073	1711	59	5		5	MUC5B	11	1213453	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	679579	1213453	133793063	435	36545											
OR51E2	81285	broad.mit.edu	37	chr11	4703243	4703243	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttccaaaggccttggcCcgctctgacttggaaggcag	13	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4703243	A	A	4703243	2	1	19	1	0	0	0	0	0	0	0	1	11189	610	22	2		2	OR51E2	11	4703243	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	3489790	4703243	130303273	436	36546											
CCKBR	887	broad.mit.edu	37	chr11	6291761	6291761	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagcggcacccccaaatcCtactcctacttcaggtacct	5	19	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6291761	T	T	6291761	1	4	19	0	1	0	0	0	0	0	0	0	2909	696	24	4		4	CCKBR	11	6291761	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1588518	6291761	128714755	437	36547											
OR10A2	341276	broad.mit.edu	37	chr11	6891431	6891431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctactgtgcagaccacatGgctcttcagttttccattct	7	12	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6891431	T	T	6891431	3	4	19	1	0	0	0	0	1	0	0	0	10984	1357	47	2	448	2	OR10A2	11	6891431	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	599670	6891431	128115085	438	36548											
EIF3F	8665	broad.mit.edu	37	chr11	8017408	8017408	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtcctcatacccagtGtctaccatagagctggccaa	8	14	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8017408	C	C	8017408	1	2	19	0	1	0	0	0	0	0	0	0	5058	1392	48	4		4	EIF3F	11	8017408	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1125977	8017408	126989108	439	36549											
ASCL3	56676	broad.mit.edu	37	chr11	8959544	8959544	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcgctgggaaaaggcagCcgtggcagctcctcagagta	15	10	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8959544	A	A	8959544	2	1	19	1	0	0	0	0	0	0	0	1	1039	726	26	3		3	ASCL3	11	8959544	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	942136	8959544	126046972	440	36550											
IPO7	10527	broad.mit.edu	37	chr11	9457805	9457805	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccttactgcaatttatattCtgttttgatcaggttcttac	6	8	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9457805	T	T	9457805	1	4	19	0	1	0	0	0	0	0	0	0	7867	928	32	4		4	IPO7	11	9457805	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	498261	9457805	125548711	441	36551											
USH1C	10083	broad.mit.edu	37	chr11	17517199	17517199	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcggaccggttgggggctttCagctacggaggagggaagag	19	7	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17517199	A	A	17517199	1	1	19	0	1	0	0	0	0	0	0	0	17160	835	29	3		3	USH1C	11	17517199	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	8059394	17517199	117489317	442	36552											
PTPN5	84867	broad.mit.edu	37	chr11	18750956	18750956	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccctctacccgctcgggGctctagctcccttgtgtgtc	9	17	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18750956	A	A	18750956	1	1	19	0	1	0	0	0	0	0	0	0	12899	1218	42	4		4	PTPN5	11	18750956	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1233757	18750956	116255560	443	36553											
SLC6A5	9152	broad.mit.edu	37	chr11	20648251	20648251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctctgcccatggcttttcTaggtggtgtacttcacggcc	10	14	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20648251	A	A	20648251	1	1	19	0	1	0	0	0	0	0	0	0	14801	1537	53	5		5	SLC6A5	11	20648251	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1897295	20648251	114358265	444	36554											
NELL1	4745	broad.mit.edu	37	chr11	20948800	20948800	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgttgctattagctttgTtaggatgatgcaattgaatt	9	4	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20948800	A	A	20948800	1	1	19	0	1	0	0	0	0	0	0	0	10428	1740	60	5		5	NELL1	11	20948800	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	300549	20948800	114057716	445	36555											
FANCF	2188	broad.mit.edu	37	chr11	22646877	22646877	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggtcttcatcagagaGtcctcctggagatttgggtt	13	9	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22646877	C	C	22646877	3	2	19	1	0	0	0	0	1	0	0	0	5724	1020	36	4	648	4	FANCF	11	22646877	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1698077	22646877	112359639	446	36556											
SLC5A12	159963	broad.mit.edu	37	chr11	26692557	26692557	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctagcaatggcaactataCatatctactaacaagtaggc	6	9	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26692557	A	A	26692557	1	1	19	0	1	0	0	0	0	0	0	0	14778	493	17	3		3	SLC5A12	11	26692557	3'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	4045680	26692557	108313959	447	36557											
PDHX	8050	broad.mit.edu	37	chr11	34987995	34987995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgcaaatattagaacGtgacaaataatggtcagcag	8	5	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34987995	T	T	34987995	1	4	19	0	1	0	0	0	0	0	0	0	11761	1160	40	3		3	PDHX	11	34987995	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	8295438	34987995	100018521	448	36558											
F2	2147	broad.mit.edu	37	chr11	46748237	46748237	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggccaggacttgcccCtcactgcttggcttgctctg	12	14	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46748237	T	T	46748237	1	4	19	0	1	0	0	0	0	0	0	0	5385	696	24	4		4	F2	11	46748237	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	11760242	46748237	88258279	449	36559											
OR4C12	283093	broad.mit.edu	37	chr11	50003265	50003265	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcagagtggtcactgagCgcagatacacaaatatacag	12	8	1	3	rs141386333		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50003265	T	T	50003265	3	4	19	1	0	0	0	0	1	0	0	0	11140	768	27	4	160	4	OR4C12	11	50003265	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	3255028	50003265	85003251	450	36560											
TRIM48	79097	broad.mit.edu	37	chr11	55032998	55032998	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacttatttgtctctcattcTgggccccctcccaatgaaac	6	14	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55032998	G	G	55032998	1	3	19	0	1	0	0	0	0	0	0	0	16648	1595	55	5		5	TRIM48	11	55032998	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	5029733	55032998	79973518	451	36561											
OR4C15	81309	broad.mit.edu	37	chr11	55321872	55321872	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataccacaaattgatctgaaGcaaattttcctttgtcctaa	4	9	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55321872	C	C	55321872	3	2	19	1	0	0	0	0	1	0	0	0	11142	962	34	4	92	4	OR4C15	11	55321872	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	288874	55321872	79684644	452	36562											
OR5D13	390142	broad.mit.edu	37	chr11	55540848	55540848	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatgaagcctctttcctaTctcttttttcctatccagtt	3	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55540848	A	A	55540848	1	1	19	0	1	0	0	0	0	0	0	0	11248	1450	50	5		5	OR5D13	11	55540848	5'Flank	SNP	T	TCGA-05-4420-01A-01D-1265-08	218976	55540848	79465668	453	36563											
OR5D14	219436	broad.mit.edu	37	chr11	55563657	55563657	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcttcgccaccttcaatgAgatgtgtacactactgatca	7	12	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563657	T	T	55563657	3	4	19	1	0	0	0	0	1	0	0	0	11249	304	11	5	628	5	OR5D14	11	55563657	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	22809	55563657	79442859	454	36564											
OR5T1	390155	broad.mit.edu	37	chr11	56043831	56043831	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctgttggccattctgaaGatgcagtctgctgaagggag	13	7	3	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56043831	T	T	56043831	3	4	19	1	0	0	0	0	1	0	0	0	11275	933	33	3	719	3	OR5T1	11	56043831	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	480174	56043831	78962685	455	36565											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57068012	57068012	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcctcacctcagtgactTctcagaccttcttcttcttc	4	16	6	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57068012	A	A	57068012	1	1	19	0	1	0	0	0	0	0	0	0	16443	1798	62	5		5	TNKS1BP1	11	57068012	3'UTR	SNP	T	TCGA-05-4420-01A-01D-1265-08	1024181	57068012	77938504	456	36566											
OR10Q1	219960	broad.mit.edu	37	chr11	57996185	57996185	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcggagggtgctgtgtgTgcacaccacccagatgatgg	17	9	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57996185	G	G	57996185	3	3	19	1	0	0	0	0	1	0	0	0	11010	1696	59	5	800	5	OR10Q1	11	57996185	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	928173	57996185	77010331	457	36567											
MS4A12	54860	broad.mit.edu	37	chr11	60268654	60268654	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccattctggggtggcctttCtgtgagtagattgctagaac	12	9	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60268654	A	A	60268654	3	1	19	1	0	0	0	0	1	0	0	0	9950	927	32	3	419	3	MS4A12	11	60268654	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2272469	60268654	74737862	458	36568											
PYGM	5837	broad.mit.edu	37	chr11	64525444	64525444	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacaggcactcacagtgcaCggtggggcagggtgggggcc	19	10	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64525444	T	T	64525444	1	4	19	0	1	0	0	0	0	0	0	0	12970	551	19	4		4	PYGM	11	64525444	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	4256790	64525444	70481072	459	36569											
SPDYC	387778	broad.mit.edu	37	chr11	64938719	64938719	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcacccacccctccaccgtCctggcccctgtcaccaccct	5	24	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64938719	A	A	64938719	1	1	19	0	1	0	0	0	0	0	0	0	15144	870	30	3		3	SPDYC	11	64938719	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	413275	64938719	70067797	460	36570											
EFEMP2	30008	broad.mit.edu	37	chr11	65637871	65637871	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaacactccccgctacagtCctctgtgtctgatgacggag	9	14	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65637871	T	T	65637871	1	4	19	0	1	0	0	0	0	0	0	0	4982	870	30	4		4	EFEMP2	11	65637871	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	699152	65637871	69368645	461	36571											
RIN1	9610	broad.mit.edu	37	chr11	66100964	66100964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctgcttattcagggccCacccagacagggaggtgggt	13	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66100964	A	A	66100964	1	1	19	0	1	0	0	0	0	0	0	0	13482	609	21	2		2	RIN1	11	66100964	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	463093	66100964	68905552	462	36572											
KDM2A	22992	broad.mit.edu	37	chr11	67021866	67021866	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgggtcttccactcgctactCtctcacagagctcaatatgg	8	14	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67021866	G	G	67021866	3	3	19	1	0	0	0	0	1	0	0	0	8194	913	32	4	3358	4	KDM2A	11	67021866	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	920902	67021866	67984650	463	36573											
ANKRD13D	338692	broad.mit.edu	37	chr11	67058967	67058967	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcccccgatttctacgttgaGatgaagtgggagttcaccag	12	10	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67058967	C	C	67058967	3	2	19	1	0	0	0	0	1	0	0	0	644	933	33	4	386	4	ANKRD13D	11	67058967	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	37101	67058967	67947549	464	36574											
MTL5	9633	broad.mit.edu	37	chr11	68506070	68506070	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcatgaaggtgtgcagTgaagctcattttatagtata	11	4	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68506070	C	C	68506070	1	2	19	0	1	0	0	0	0	0	0	0	10030	1711	59	5		5	MTL5	11	68506070	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1447103	68506070	66500446	465	36575											
CTTN	2017	broad.mit.edu	37	chr11	70263174	70263174	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggccgaccgagtagacaaGagcgcggtgggcttcgacta	15	11	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70263174	T	T	70263174	3	4	19	1	0	0	0	0	1	0	0	0	4078	933	33	3	535	3	CTTN	11	70263174	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1757104	70263174	64743342	466	36576											
CTTN	2017	broad.mit.edu	37	chr11	70280996	70280996	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggagaggcagcaggagcCtccgcggtggtccgcatctc	16	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70280996	T	T	70280996	1	4	19	0	1	0	0	0	0	0	0	0	4078	696	24	4		4	CTTN	11	70280996	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	17822	70280996	64725520	467	36577											
NADSYN1	55191	broad.mit.edu	37	chr11	71194086	71194086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagttggtccctggtattgGgcatggcaggtggctgacag	17	7	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71194086	T	T	71194086	1	4	19	0	1	0	0	0	0	0	0	0	10232	1247	43	2		2	NADSYN1	11	71194086	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	913090	71194086	63812430	468	36578											
ARAP1	116985	broad.mit.edu	37	chr11	72410139	72410139	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctccgtgtacacctcaaAggtgtgctcaaagctgcaaa	8	13	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72410139	T	T	72410139	3	4	19	1	0	0	0	0	1	0	0	0	840	72	3	5	1972	5	ARAP1	11	72410139	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1216053	72410139	62596377	469	36579											
ATG16L2	89849	broad.mit.edu	37	chr11	72554622	72554622	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaattaaaaaggttagataAggagcagatgtgagctgatc	11	3	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72554622	C	C	72554622	1	2	19	0	1	0	0	0	0	0	0	0	1096	87	3	5		5	ATG16L2	11	72554622	3'UTR	SNP	A	TCGA-05-4420-01A-01D-1265-08	144483	72554622	62451894	470	36580											
PAAF1	80227	broad.mit.edu	37	chr11	73638539	73638539	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttggaaatcacagaaagtCagctgtactggccgtgtgga	12	9	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73638539	T	T	73638539	1	4	19	0	1	0	0	0	0	0	0	0	11456	841	29	4		4	PAAF1	11	73638539	3'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	1083917	73638539	61367977	471	36581											
MYO7A	4647	broad.mit.edu	37	chr11	76888588	76888588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgctcaggagctctgcCtcctaggaccaccatgacat	10	15	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76888588	A	A	76888588	1	1	19	0	1	0	0	0	0	0	0	0	10176	696	24	2		2	MYO7A	11	76888588	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	3250049	76888588	58117928	472	36582											
ANKRD42	338699	broad.mit.edu	37	chr11	82938904	82938904	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgataatggatcaactccTatgcataaaggtgagttatg	10	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82938904	C	C	82938904	2	2	19	1	0	0	0	0	0	0	0	1	670	1509	53	5		5	ANKRD42	11	82938904	Silent	SNP	T	TCGA-05-4420-01A-01D-1265-08	6050316	82938904	52067612	473	36583											
DLG2	1740	broad.mit.edu	37	chr11	84028205	84028205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatactgcactgatgcctaCtctttcctttggtcagctct	6	13	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84028205	A	A	84028205	1	1	19	0	1	0	0	0	0	0	0	0	4595	580	20	3		3	DLG2	11	84028205	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1089301	84028205	50978311	474	36584											
KDM4DL	390245	broad.mit.edu	37	chr11	94759362	94759362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttggtacgtggtgccccCagaacatggtcagcacctgg	12	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94759362	A	A	94759362	3	1	19	1	0	0	0	0	1	0	0	0	8202	594	21	2	643	2	KDM4DL	11	94759362	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	10731157	94759362	40247154	475	36585											
CASP1	834	broad.mit.edu	37	chr11	104937555	104937555	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccgttattttagaaagacTatcaaactcttcgttgcaga	6	9	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104937555	A	A	104937555	1	1	19	0	1	0	0	0	0	0	0	0	2694	1537	53	5		5	CASP1	11	104937555	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	10178193	104937555	30068961	476	36586											
NPAT	4863	broad.mit.edu	37	chr11	108043482	108043482	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaatggatcatcactaatGataactttgagagagacgat	8	6	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108043482	A	A	108043482	2	1	19	1	0	0	0	0	0	0	0	1	10661	1280	45	4		4	NPAT	11	108043482	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	3105927	108043482	26963034	477	36587											
TAGLN	6876	broad.mit.edu	37	chr11	117074381	117074381	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaggcctcccttgaattgGggacaactcttggccctggt	13	11	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117074381	C	C	117074381	1	2	19	0	1	0	0	0	0	0	0	0	15657	1247	43	4		4	TAGLN	11	117074381	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	9030899	117074381	17932135	478	36588											
TMEM25	84866	broad.mit.edu	37	chr11	118403401	118403401	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaatctgcccagggtgatGatcccgctggtaagaagcag	13	10	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118403401	T	T	118403401	1	4	19	0	1	0	0	0	0	0	0	0	16273	1305	45	3		3	TMEM25	11	118403401	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1329020	118403401	16603115	479	36589											
PVRL1	5818	broad.mit.edu	37	chr11	119509626	119509626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactcacaagagcaggcccGggagctctgcttcccaggca	11	16	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119509626	T	T	119509626	1	4	19	0	1	0	0	0	0	0	0	0	12947	1131	39	1		1	PVRL1	11	119509626	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1106225	119509626	15496890	480	36590											
ARHGEF12	23365	broad.mit.edu	37	chr11	120352136	120352136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccgatggggcaatttcaCcattcacccccgaatttctg	7	14	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120352136	A	A	120352136	3	1	19	1	0	0	0	0	1	0	0	0	899	507	18	3	4559	3	ARHGEF12	11	120352136	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	842510	120352136	14654380	481	36591											
OR10S1	219873	broad.mit.edu	37	chr11	123847563	123847563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccccagctcctgcctcaCtggagcgaggctgcaggtag	15	14	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123847563	A	A	123847563	3	1	19	1	0	0	0	0	1	0	0	0	11012	565	20	3	163	3	OR10S1	11	123847563	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	3495427	123847563	11158953	482	36592											
FLI1	2313	broad.mit.edu	37	chr11	128680825	128680825	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggggaatctaccccaaccCcaacgtcccccgccatccta	8	19	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128680825	G	G	128680825	3	3	19	1	0	0	0	0	1	0	0	0	5981	623	22	4	1335	4	FLI1	11	128680825	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	4833262	128680825	6325691	483	36593											
PRDM10	56980	broad.mit.edu	37	chr11	129800718	129800718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatctaggaccagccatgCcagcctgccatgggacacag	10	14	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129800718	A	A	129800718	1	1	19	0	1	0	0	0	0	0	0	0	12557	754	26	3		3	PRDM10	11	129800718	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1119893	129800718	5205798	484	36594											
OPCML	4978	broad.mit.edu	37	chr11	132307139	132307139	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacagtgatttttactttcCgcacatcgggcgcagcgaca	9	11	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132307139	G	G	132307139	3	3	19	1	0	0	0	0	1	0	0	0	10968	652	23	4	412	4	OPCML	11	132307139	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2506421	132307139	2699377	485	36595											
IGSF9B	22997	broad.mit.edu	37	chr11	133789866	133789866	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggagcctgtggacggcgTagactttcgagaaaagctga	17	7	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133789866	C	C	133789866	3	2	19	1	0	0	0	0	1	0	0	0	7676	1638	57	5	303	5	IGSF9B	11	133789866	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	1482727	133789866	1216650	486	36596											
KDM5A	5927	broad.mit.edu	37	chr12	498227	498227	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcggtggcacgaactccgCcgcgtagccccccggcccca	13	19	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	498227	G	G	498227	3	3	19	1	0	0	0	0	1	0	0	0	8203	739	26	4	5153	4	KDM5A	12	498227	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08		498227	133353668	487	36597											
CACNA1C	775	broad.mit.edu	37	chr12	2224599	2224599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggaagcggcagcaatatGggaaacccaagaagcagggc	15	9	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2224599	T	T	2224599	3	4	19	1	0	0	0	0	1	0	0	0	2566	1348	47	2	265	2	CACNA1C	12	2224599	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1726372	2224599	131627296	488	36598											
FGF23	8074	broad.mit.edu	37	chr12	4481880	4481880	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacctatggagaaaaacagGcagggcaaagactcattgcc	11	10	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4481880	C	C	4481880	1	2	19	0	1	0	0	0	0	0	0	0	5909	1218	42	4		4	FGF23	12	4481880	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2257281	4481880	129370015	489	36599											
GPR162	27239	broad.mit.edu	37	chr12	6935352	6935352	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaccactctgcccattttCtctcctagatgggggctgtg	10	12	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6935352	A	A	6935352	1	1	19	0	1	0	0	0	0	0	0	0	6731	928	32	3		3	GPR162	12	6935352	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2453472	6935352	126916543	490	36600											
GNB3	2784	broad.mit.edu	37	chr12	6950713	6950713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcacctgccacccccacCtcgcccttgctcccctgatg	6	22	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6950713	A	A	6950713	1	1	19	0	1	0	0	0	0	0	0	0	6583	696	24	2		2	GNB3	12	6950713	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	15361	6950713	126901182	491	36601											
PEX5	5830	broad.mit.edu	37	chr12	7360576	7360576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatggagaggtgaatatgGggtgatggaatctgtcaact	15	4	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7360576	T	T	7360576	1	4	19	0	1	0	0	0	0	0	0	0	11843	1247	43	2		2	PEX5	12	7360576	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	409863	7360576	126491319	492	36602											
SLC2A3	6515	broad.mit.edu	37	chr12	8074110	8074110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcctgcccttcaaaggCccgtgtgatatcctcaaaag	10	12	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8074110	A	A	8074110	3	1	19	1	0	0	0	0	1	0	0	0	14659	739	26	3	104	3	SLC2A3	12	8074110	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	713534	8074110	125777785	493	36603											
FAM90A1	55138	broad.mit.edu	37	chr12	8376463	8376463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagctcttgggtgtggaaCtccggaagacacagagctcc	14	10	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8376463	A	A	8376463	1	1	19	0	1	0	0	0	0	0	0	0	5703	580	20	3		3	FAM90A1	12	8376463	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	302353	8376463	125475432	494	36604											
A2ML1	144568	broad.mit.edu	37	chr12	8994049	8994049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaaatggaaccttcaacCagaccctggttactgataac	7	12	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8994049	A	A	8994049	3	1	19	1	0	0	0	0	1	0	0	0	5	595	21	2	1207	2	A2ML1	12	8994049	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	617586	8994049	124857846	495	36605											
KLRC3	3823	broad.mit.edu	37	chr12	10587093	10587093	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaaaatgtacctttctgcGttcttgtattcggggaaaaa	8	6	2	0	rs143264024	byFrequency	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10587093	A	A	10587093	3	1	19	1	0	0	0	0	1	0	0	0	8488	1145	40	4		4	KLRC3	12	10587093	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1593044	10587093	123264802	496	36606											
CDKN1B	1027	broad.mit.edu	37	chr12	12870888	12870888	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttcggcccggtggaccacGaagagttaacccgggacttg	13	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12870888	C	C	12870888	3	2	19	1	0	0	0	0	1	0	0	0	3189	1059	37	4	117	4	CDKN1B	12	12870888	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2283795	12870888	120981007	497	36607											
FAR2	55711	broad.mit.edu	37	chr12	29423409	29423409	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaattgcagctttctatggCggcaagtccattctcatcac	7	12	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29423409	A	A	29423409	2	1	19	1	0	0	0	0	0	0	0	1	5732	755	27	3		3	FAR2	12	29423409	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	16552521	29423409	104428486	498	36608											
FAR2	55711	broad.mit.edu	37	chr12	29423423	29423423	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatggcggcaagtccattcTcatcacgggggccacaggct	12	13	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29423423	C	C	29423423	3	2	19	1	0	0	0	0	1	0	0	0	5732	1551	54	5	43	5	FAR2	12	29423423	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	14	29423423	104428472	499	36609											
TMTC1	83857	broad.mit.edu	37	chr12	29670472	29670472	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtgctcccaaaggtgacAatatctcagctttgtgtgcc	9	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29670472	C	C	29670472	3	2	19	1	0	0	0	0	1	0	0	0	16383	131	5	5	611	5	TMTC1	12	29670472	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	247049	29670472	104181423	500	36610											
FAM60A	58516	broad.mit.edu	37	chr12	31435625	31435626	+	3'UTR	DNP	CC	AA	AA													gatatttttttttttgttccCcttctacataaaaacctcag							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31435626	AA	AA	31435625	1	1	19	0	1	0	0	0	0	0	0	0	5646	638	22	2		2	FAM60A	12	31435625	3'UTR	DNP	CC	TCGA-05-4420-01A-01D-1265-08	1765153	31435625	102416270	501	36611											
ADAMTS20	80070	broad.mit.edu	37	chr12	43846183	43846183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattggttccagcaacctgaCaatagagtttacaacgatcc	7	10	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43846183	A	A	43846183	3	1	19	1	0	0	0	0	1	0	0	0	266	478	17	3	3862	3	ADAMTS20	12	43846183	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	12410558	43846183	90005712	502	36612											
HDAC7	51564	broad.mit.edu	37	chr12	48188624	48188624	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctccaggccatcgtcCaccacctggcccggtccccc	9	21	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48188624	G	G	48188624	2	3	19	1	0	0	0	0	0	0	0	1	7079	581	21	4		4	HDAC7	12	48188624	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	4342441	48188624	85663271	503	36613											
TROAP	10024	broad.mit.edu	37	chr12	49717254	49717254	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatagcacccataagagcggTcttgcaggcgccgggggctt	15	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49717254	A	A	49717254	1	1	19	0	1	0	0	0	0	0	0	0	16700	1682	58	5		5	TROAP	12	49717254	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1528630	49717254	84134641	504	36614											
RACGAP1	29127	broad.mit.edu	37	chr12	50384012	50384012	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagatgtgtcctttcttaTagtcagtcaatgctgggaag	10	7	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50384012	C	C	50384012	1	2	19	0	1	0	0	0	0	0	0	0	13085	1421	49	5		5	RACGAP1	12	50384012	3'UTR	SNP	T	TCGA-05-4420-01A-01D-1265-08	666758	50384012	83467883	505	36615											
KRT2	3849	broad.mit.edu	37	chr12	53038773	53038773	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgggagagtctgggttGggagagtcggtggtggtggg	25	2	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53038773	C	C	53038773	1	2	19	0	1	0	0	0	0	0	0	0	8528	1363	47	4		4	KRT2	12	53038773	3'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	2654761	53038773	80813122	506	36616											
PFDN5	5204	broad.mit.edu	37	chr12	53691907	53691907	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagaaaatccaaccagctCttcaggagaagcacgccatg	10	11	2	2	rs146649111		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53691907	T	T	53691907	3	4	19	1	0	0	0	0	1	0	0	0	11853	913	32	4	379	4	PFDN5	12	53691907	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	653134	53691907	80159988	507	36617											
HOXC9	3225	broad.mit.edu	37	chr12	54394171	54394171	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgttcagcacgtcgtggGcgcccgtgccctctcagtcg	13	15	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54394171	A	A	54394171	3	1	19	1	0	0	0	0	1	0	0	0	7384	1203	42	4	201	4	HOXC9	12	54394171	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	702264	54394171	79457724	508	36618											
SMARCC2	6601	broad.mit.edu	37	chr12	56563739	56563739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagttatcagggattaggGtgattagttctcacacagag	13	5	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56563739	T	T	56563739	1	4	19	0	1	0	0	0	0	0	0	0	14890	1276	44	3		3	SMARCC2	12	56563739	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2169568	56563739	77288156	509	36619											
IRAK3	11213	broad.mit.edu	37	chr12	66620648	66620648	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctattattctgtctgatccTctgaccccttgaatccctgg	6	13	4	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66620648	C	C	66620648	1	2	19	0	1	0	0	0	0	0	0	0	7894	1566	54	5		5	IRAK3	12	66620648	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	10056909	66620648	67231247	510	36620											
HELB	92797	broad.mit.edu	37	chr12	66698906	66698906	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgttcctagacaatgagAtgagtcttcctctggaaaac	9	8	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66698906	C	C	66698906	3	2	19	1	0	0	0	0	1	0	0	0	7112	333	12	5	589	5	HELB	12	66698906	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	78258	66698906	67152989	511	36621											
IFNG	3458	broad.mit.edu	37	chr12	68549249	68549249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgtattgctttgcgttGgacattcaagtcagttacct	8	8	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68549249	T	T	68549249	3	4	19	1	0	0	0	0	1	0	0	0	7618	1357	47	2	119	2	IFNG	12	68549249	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1850343	68549249	65302646	512	36622											
LGR5	8549	broad.mit.edu	37	chr12	71960644	71960644	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaactggagcacagatctCatctcttcctcaaaccgtct	5	13	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71960644	A	A	71960644	4	1	19	1	0	0	0	0	0	1	0	0	8829	838	29	3	1064	3	LGR5	12	71960644	Nonsense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	3411395	71960644	61891251	513	36623											
TRHDE	29953	broad.mit.edu	37	chr12	73056896	73056896	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctcacgagctgtggaaaCtgtcgaagccaatgtgcgct	11	10	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73056896	G	G	73056896	3	3	19	1	0	0	0	0	1	0	0	0	16603	565	20	4	3070	4	TRHDE	12	73056896	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1096252	73056896	60794999	514	36624											
NAV3	89795	broad.mit.edu	37	chr12	78415666	78415666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgacctcatcgatgcataGgtcaaacctaggaatttccg	9	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78415666	T	T	78415666	1	4	19	0	1	0	0	0	0	0	0	0	10279	1015	35	2		2	NAV3	12	78415666	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	5358770	78415666	55436229	515	36625											
EEA1	8411	broad.mit.edu	37	chr12	93258595	93258595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacgacgataccacatgCatattccataacattatact	3	10	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93258595	A	A	93258595	1	1	19	0	1	0	0	0	0	0	0	0	4961	725	25	3		3	EEA1	12	93258595	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	14842929	93258595	40593300	516	36626											
STAB2	55576	broad.mit.edu	37	chr12	104078705	104078705	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggagcctgtcgtctcataGatgtaactcaggtctaacgt	10	9	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104078705	A	A	104078705	1	1	19	0	1	0	0	0	0	0	0	0	15356	957	33	4		4	STAB2	12	104078705	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	10820110	104078705	29773190	517	36627											
BRAP	8315	broad.mit.edu	37	chr12	112116863	112116863	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catctcaagaatcttaagtgCaaaatgttgtaaatcacaca	5	8	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112116863	G	G	112116863	1	3	19	0	1	0	0	0	0	0	0	0	1506	725	25	4		4	BRAP	12	112116863	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	8038158	112116863	21735032	518	36628											
BRAP	8315	broad.mit.edu	37	chr12	112119674	112119674	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaatagcagattataaatgGataggacatatgctgaagga	10	3	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112119674	A	A	112119674	1	1	19	0	1	0	0	0	0	0	0	0	1506	1189	41	4		4	BRAP	12	112119674	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2811	112119674	21732221	519	36629											
OAS3	4940	broad.mit.edu	37	chr12	113382446	113382446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttgctggtgaagcactGgtaccaccaggtgaagccac	11	11	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113382446	T	T	113382446	3	4	19	1	0	0	0	0	1	0	0	0	10896	1357	47	2	636	2	OAS3	12	113382446	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1262772	113382446	20469449	520	36630											
CIT	11113	broad.mit.edu	37	chr12	120270671	120270671	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaggcttgatgtctctGtaagaaaatcaggaccatga	9	8	3	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120270671	A	A	120270671	1	1	19	0	1	0	0	0	0	0	0	0	3469	1392	48	4		4	CIT	12	120270671	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	6888225	120270671	13581224	521	36631											
GCN1L1	10985	broad.mit.edu	37	chr12	120592761	120592761	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtagaacgaggctgaAcaattgttatacctggcttc	11	7	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120592761	T	T	120592761	1	4	19	0	1	0	0	0	0	0	0	0	6361	58	2	5		5	GCN1L1	12	120592761	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	322090	120592761	13259134	522	36632											
TMEM120B	144404	broad.mit.edu	37	chr12	122199586	122199586	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtcttcaacttcctgctgGtgtggtattactgcaccctg	9	11	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122199586	C	C	122199586	3	2	19	1	0	0	0	0	1	0	0	0	16157	1261	44	4	515	4	TMEM120B	12	122199586	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1606825	122199586	11652309	523	36633											
WDR66	144406	broad.mit.edu	37	chr12	122369737	122369737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagttcttctgtatgtttGtgctcacactgcgatcatct	9	9	5	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122369737	T	T	122369737	3	4	19	1	0	0	0	0	1	0	0	0	17444	1377	48	3	843	3	WDR66	12	122369737	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	170151	122369737	11482158	524	36634											
DNAH10	196385	broad.mit.edu	37	chr12	124258688	124258688	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttacattctacacctgttcTtctttagaggcaatctctga	5	11	4	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124258688	G	G	124258688	1	3	19	0	1	0	0	0	0	0	0	0	4638	1624	56	5		5	DNAH10	12	124258688	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	1888951	124258688	9593207	525	36635											
FAM101A	144347	broad.mit.edu	37	chr12	124798726	124798726	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcactccgcttccctccTgccctttccagctgcaactc	6	19	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124798726	C	C	124798726	1	2	19	0	1	0	0	0	0	0	0	0	5426	1595	55	5		5	FAM101A	12	124798726	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	540038	124798726	9053169	526	36636											
GLT1D1	144423	broad.mit.edu	37	chr12	129360768	129360768	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttcttaatgcacaattttCttaaatgttataacagtcaa	3	7	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129360768	T	T	129360768	1	4	19	0	1	0	0	0	0	0	0	0	6529	928	32	4		4	GLT1D1	12	129360768	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	4562042	129360768	4491127	527	36637											
TMEM132D	121256	broad.mit.edu	37	chr12	130184930	130184930	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgtcccgcaggatgtgGgcttttagtttccagttaag	11	8	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130184930	T	T	130184930	2	4	19	1	0	0	0	0	0	0	0	1	16170	1219	43	2		2	TMEM132D	12	130184930	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	824162	130184930	3666965	528	36638											
TPTE2	93492	broad.mit.edu	37	chr13	20077249	20077249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgggagaagtgtgtAtggatggatgcatggatgca	17	2	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20077249	T	T	20077249	1	4	19	0	1	0	0	0	0	0	0	0	16555	464	16	5		5	TPTE2	13	20077249	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08		20077249	95092629	529	36639											
PSPC1	55269	broad.mit.edu	37	chr13	20346557	20346557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctagcagctcattggaaaCaactggagaaaggttcttga	10	8	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20346557	T	T	20346557	3	4	19	1	0	0	0	0	1	0	0	0	12822	478	17	4	1104	4	PSPC1	13	20346557	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	269308	20346557	94823321	530	36640											
PARP4	143	broad.mit.edu	37	chr13	25064615	25064615	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatcggagtggaatatagaGggtgttttcaagcacagaaa	12	4	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25064615	C	C	25064615	1	2	19	0	1	0	0	0	0	0	0	0	11557	1015	35	4		4	PARP4	13	25064615	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	4718058	25064615	90105263	531	36641											
WASF3	10810	broad.mit.edu	37	chr13	27241892	27241892	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagctgatgcattgtgtggGaatgtccttgatggttcatc	12	7	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27241892	T	T	27241892	1	4	19	0	1	0	0	0	0	0	0	0	17381	1189	41	3		3	WASF3	13	27241892	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2177277	27241892	87927986	532	36642											
RPL21	6144	broad.mit.edu	37	chr13	27829569	27829569	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactttgccagttggacttaTgtctttattggtcattcaag	8	8	3	0	rs143708880	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27829569	C	C	27829569	1	2	19	0	1	0	0	0	0	0	0	0	13678	1479	51	5		5	RPL21	13	27829569	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	587677	27829569	87340309	533	36643											
RPL21	6144	broad.mit.edu	37	chr13	27830439	27830439	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaaagaaagaagccaaaGagaaaggtacctgggttcaa	11	5	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27830439	T	T	27830439	4	4	19	1	0	0	0	0	0	1	0	0	13678	943	33	3	375	3	RPL21	13	27830439	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	870	27830439	87339439	534	36644											
MTUS2	23281	broad.mit.edu	37	chr13	30061951	30061951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttgtcattgatgttttgGgtcacggaccttttccactc	9	10	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30061951	T	T	30061951	1	4	19	0	1	0	0	0	0	0	0	0	10060	1247	43	2		2	MTUS2	13	30061951	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2231512	30061951	85107927	535	36645											
C13orf26	122046	broad.mit.edu	37	chr13	31530895	31530895	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagcatccatgcacctgcAgtggcagctggttgtaaagg	12	12	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31530895	T	T	31530895	1	4	19	0	1	0	0	0	0	0	0	0	1735	203	7	5		5	C13orf26	13	31530895	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	1468944	31530895	83638983	536	36646											
POSTN	10631	broad.mit.edu	37	chr13	38138664	38138664	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatacacttaccttgaactTttttgttggcttgcaacttc	5	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38138664	A	A	38138664	3	1	19	1	0	0	0	0	1	0	0	0	12354	1841	64	5	53	5	POSTN	13	38138664	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	6607769	38138664	77031214	537	36647											
ZC3H13	23091	broad.mit.edu	37	chr13	46549342	46549342	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaggaaattaagagtataTtgaaaagcattaaatgaaac	7	3	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46549342	C	C	46549342	1	2	19	0	1	0	0	0	0	0	0	0	17691	1508	52	5		5	ZC3H13	13	46549342	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	8410678	46549342	68620536	538	36648											
RCBTB2	1102	broad.mit.edu	37	chr13	49070638	49070638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctacccaggatggcagCcaagctgagcaaacatgata	11	11	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49070638	A	A	49070638	1	1	19	0	1	0	0	0	0	0	0	0	13280	754	26	3		3	RCBTB2	13	49070638	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2521296	49070638	66099240	539	36649											
SUGT1	10910	broad.mit.edu	37	chr13	53241004	53241004	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaatttgaaactggaacttCttcatcctataataccagaa	4	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53241004	T	T	53241004	3	4	19	1	0	0	0	0	1	0	0	0	15487	913	32	4	715	4	SUGT1	13	53241004	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	4170366	53241004	61928874	540	36650											
PCDH9	5101	broad.mit.edu	37	chr13	67802047	67802047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaattcataatgctgtaCaccattgaagcctgtgtcag	7	9	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67802047	A	A	67802047	3	1	19	1	0	0	0	0	1	0	0	0	11612	478	17	3	3203	3	PCDH9	13	67802047	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	14561043	67802047	47367831	541	36651											
DACH1	1602	broad.mit.edu	37	chr13	72147097	72147097	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagatgctggaggtaggcTgacaggaattagagggtggg	19	4	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72147097	A	A	72147097	3	1	19	1	0	0	0	0	1	0	0	0	4253	1580	55	5	978	5	DACH1	13	72147097	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	4345050	72147097	43022781	542	36652											
SLAIN1	122060	broad.mit.edu	37	chr13	78327435	78327435	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcaccgtgcgaaatagtcaGagttttgactcaagcttgca	10	9	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78327435	T	T	78327435	3	4	19	1	0	0	0	0	1	0	0	0	14478	933	33	3	647	3	SLAIN1	13	78327435	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	6180338	78327435	36842443	543	36653											
COL4A1	1282	broad.mit.edu	37	chr13	110804880	110804880	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacagatgcgagccgtgagtCagaggttccctccccaaaca	10	13	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110804880	T	T	110804880	1	4	19	0	1	0	0	0	0	0	0	0	3721	841	29	4		4	COL4A1	13	110804880	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	32477445	110804880	4364998	544	36654											
ARHGEF7	8874	broad.mit.edu	37	chr13	111930028	111930028	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttatctatcaggtaaaacAcaatttaaatttatatttta	2	5	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111930028	G	G	111930028	1	3	19	0	1	0	0	0	0	0	0	0	913	174	6	5		5	ARHGEF7	13	111930028	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	1125148	111930028	3239850	545	36655											
POTEG	404785	broad.mit.edu	37	chr14	19563597	19563597	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgaggtttaaaataattaTaacagttacatcttacatat	4	4	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19563597	A	A	19563597	1	1	19	0	1	0	0	0	0	0	0	0	12362	1421	49	5		5	POTEG	14	19563597	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08		19563597	87785943	546	36656											
OR6S1	341799	broad.mit.edu	37	chr14	21109399	21109399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggacgagtccccccaccCagcaggccaaggccacacga	11	18	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21109399	A	A	21109399	3	1	19	1	0	0	0	0	1	0	0	0	11303	595	21	2	547	2	OR6S1	14	21109399	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1545802	21109399	86240141	547	36657											
MYH6	4624	broad.mit.edu	37	chr14	23861608	23861608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatgtattcttgctctatGggggaaggctagtgttcctg	13	6	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23861608	T	T	23861608	1	4	19	0	1	0	0	0	0	0	0	0	10132	1363	47	2		2	MYH6	14	23861608	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2752209	23861608	83487932	548	36658											
FBXO33	254170	broad.mit.edu	37	chr14	39870751	39870751	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcattacagaaacattgTgaaccagaagagacagtcgt	10	7	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39870751	A	A	39870751	3	1	19	1	0	0	0	0	1	0	0	0	5800	1696	59	5	650	5	FBXO33	14	39870751	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	16009143	39870751	67478789	549	36659											
MDGA2	161357	broad.mit.edu	37	chr14	47389131	47389131	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaaatatattttggaattCatgcaaaactcttagaaaaa	4	4	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47389131	A	A	47389131	1	1	19	0	1	0	0	0	0	0	0	0	9500	841	29	3		3	MDGA2	14	47389131	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	7518380	47389131	59960409	550	36660											
MDGA2	161357	broad.mit.edu	37	chr14	47426714	47426714	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaattgacccgtccgtaatAatttattgcccaagcgccac	6	13	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47426714	T	T	47426714	4	4	19	1	0	0	0	0	0	1	0	0	9500	372	13	5	1161	5	MDGA2	14	47426714	Nonsense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	37583	47426714	59922826	551	36661											
RPS29	6235	broad.mit.edu	37	chr14	50053060	50053060	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagtacagctgctggtgaCccatcttgctctcagcagtg	10	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50053060	T	T	50053060	3	4	19	1	0	0	0	0	1	0	0	0	13753	507	18	4	223	4	RPS29	14	50053060	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2626346	50053060	57296480	552	36662											
NID2	22795	broad.mit.edu	37	chr14	52534674	52534674	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggtaaagcgcgcagagcGcgggaagccagcgcgcacat	18	11	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52534674	A	A	52534674	3	1	19	1	0	0	0	0	1	0	0	0	10510	1087	38	4	3775	4	NID2	14	52534674	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2481614	52534674	54814866	553	36663											
WDHD1	11169	broad.mit.edu	37	chr14	55493428	55493428	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttctcaaagaaccttaCctcccagaatcatcaaaaca	3	12	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55493428	A	A	55493428	5	1	19	1	0	0	0	0	0	0	1	0	17398	521	18	3	3411	3	WDHD1	14	55493428	Splice_Site	SNP	C	TCGA-05-4420-01A-01D-1265-08	2958754	55493428	51856112	554	36664											
KCNH5	27133	broad.mit.edu	37	chr14	63453936	63453936	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaagaaagtctcagtttTtcatacaaatgaataaggaa	8	4	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63453936	C	C	63453936	1	2	19	0	1	0	0	0	0	0	0	0	8105	1856	64	5		5	KCNH5	14	63453936	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	7960508	63453936	43895604	555	36665											
SPTB	6710	broad.mit.edu	37	chr14	65268580	65268580	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagagaaacagtaagagctAagaattagattttttgtagt	9	3	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65268580	G	G	65268580	1	3	19	0	1	0	0	0	0	0	0	0	15236	377	13	5		5	SPTB	14	65268580	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	1814644	65268580	42080960	556	36666											
ZFP36L1	677	broad.mit.edu	37	chr14	69256985	69256985	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcagcagccgctcgccCccttccgagaaggagcggtc	15	15	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69256985	T	T	69256985	2	4	19	1	0	0	0	0	0	0	0	1	17772	610	22	4		4	ZFP36L1	14	69256985	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	3988405	69256985	38092555	557	36667											
ALKBH1	8846	broad.mit.edu	37	chr14	78174335	78174335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagcccacggccgctgCcatcttccccatctcgcggc	9	20	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78174335	A	A	78174335	3	1	19	1	0	0	0	0	1	0	0	0	526	739	26	3	1180	3	ALKBH1	14	78174335	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	8917350	78174335	29175205	558	36668											
GABRG3	2567	broad.mit.edu	37	chr15	27772536	27772537	+	Intron	DNP	CG	GT	GT													accgtctgggattcctgttgCgtgttgcacccttttacaac							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	27772537	GT	GT	27772536	1	3	19	0	1	0	0	0	0	0	0	0	6233	783	27	4		4	GABRG3	15	27772536	Intron	DNP	CG	TCGA-05-4420-01A-01D-1265-08		27772536	74758856	559	36669											
TRPM1	4308	broad.mit.edu	37	chr15	31318338	31318338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcggtggggacgctacacGtacctttcagaagtgacccg	13	13	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31318338	T	T	31318338	1	4	19	0	1	0	0	0	0	0	0	0	16710	1160	40	3		3	TRPM1	15	31318338	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3545802	31318338	71213054	560	36670											
RYR3	6263	broad.mit.edu	37	chr15	33988747	33988747	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagctttaagtgggaaaacTgacttaccttgatatagaga	11	5	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33988747	G	G	33988747	1	3	19	0	1	0	0	0	0	0	0	0	13881	1595	55	5		5	RYR3	15	33988747	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	2670409	33988747	68542645	561	36671											
RYR3	6263	broad.mit.edu	37	chr15	34149857	34149857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttagccgccctccaccCcttccccatttcctctcctt	2	21	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34149857	A	A	34149857	1	1	19	0	1	0	0	0	0	0	0	0	13881	638	22	2		2	RYR3	15	34149857	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	161110	34149857	68381535	562	36672											
MGA	23269	broad.mit.edu	37	chr15	42000108	42000108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttttcttgaagtttacGttatttgtaacgtaagtaaa	6	4	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42000108	T	T	42000108	1	4	19	0	1	0	0	0	0	0	0	0	9633	1160	40	3		3	MGA	15	42000108	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	7850251	42000108	60531284	563	36673											
CKMT1A	548596	broad.mit.edu	37	chr15	43990112	43990112	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacagccaagtttctattCtagacaaatttctagtgttc	5	9	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43990112	A	A	43990112	1	1	19	0	1	0	0	0	0	0	0	0	3480	928	32	3		3	CKMT1A	15	43990112	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1990004	43990112	58541280	564	36674											
SQRDL	58472	broad.mit.edu	37	chr15	45983411	45983411	+	3'UTR	SNP	G	T	T													ccatgtgggctactcatgatGggcttgattctttgggaata							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45983411	T	T	45983411	1	4	19	0	1	0	0	0	0	0	0	0	15247	1363	47	2		2	SQRDL	15	45983411	3'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	1993299	45983411	56547981	565	36675	205	2									
SQRDL	58472	broad.mit.edu	37	chr15	45983413	45983413	+	3'UTR	SNP	G	T	T													atgtgggctactcatgatggGcttgattctttgggaataat							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45983413	T	T	45983413	1	4	19	0	1	0	0	0	0	0	0	0	15247	1218	42	3		3	SQRDL	15	45983413	3'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	2	45983413	56547979	566	36676	205	2									
SEMA6D	80031	broad.mit.edu	37	chr15	48063502	48063502	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgctggatcccatgggatcGatgtctgaggtcccacctaa	11	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48063502	A	A	48063502	2	1	19	1	0	0	0	0	0	0	0	1	14155	1045	37	4		4	SEMA6D	15	48063502	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	2080089	48063502	54467890	567	36677											
ATP8B4	79895	broad.mit.edu	37	chr15	50154292	50154292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcaagatgtgggaagtcCcatctattctgatgtgatct	9	8	4	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50154292	A	A	50154292	1	1	19	0	1	0	0	0	0	0	0	0	1201	638	22	2		2	ATP8B4	15	50154292	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2090790	50154292	52377100	568	36678											
USP8	9101	broad.mit.edu	37	chr15	50769167	50769167	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactccacccccacgacgccAgaatgaagaggtgtctatct	8	15	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50769167	G	G	50769167	3	3	19	1	0	0	0	0	1	0	0	0	17216	188	7	5	1001	5	USP8	15	50769167	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	614875	50769167	51762225	569	36679											
WDR72	256764	broad.mit.edu	37	chr15	54015097	54015097	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaccaaataggagttctttCgctgaaatctgaaaataatg	8	6	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54015097	T	T	54015097	2	4	19	1	0	0	0	0	0	0	0	1	17449	871	31	4		4	WDR72	15	54015097	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	3245930	54015097	48516295	570	36680											
RAB8B	51762	broad.mit.edu	37	chr15	63536975	63536975	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaattgattttaaaattagaAcgatagaactagatggaaag	9	2	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63536975	C	C	63536975	3	2	19	1	0	0	0	0	1	0	0	0	13065	43	2	5	151	5	RAB8B	15	63536975	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	9521878	63536975	38994417	571	36681											
ZNF609	23060	broad.mit.edu	37	chr15	64966541	64966541	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcccccgtcctaattgaCtgtccccacccaaactgcaa	4	20	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64966541	T	T	64966541	2	4	19	1	0	0	0	0	0	0	0	1	18162	564	20	4		4	ZNF609	15	64966541	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1429566	64966541	37564851	572	36682											
FEM1B	10116	broad.mit.edu	37	chr15	68581900	68581900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccttaaacatatgttaGgctgtggcctctgttatcta	7	10	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68581900	T	T	68581900	1	4	19	0	1	0	0	0	0	0	0	0	5867	1015	35	2		2	FEM1B	15	68581900	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3615359	68581900	33949492	573	36683											
CCDC33	80125	broad.mit.edu	37	chr15	74558912	74558912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattcctcagtgtggcccCtgctccctactctcaacaat	6	15	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74558912	A	A	74558912	1	1	19	0	1	0	0	0	0	0	0	0	2833	696	24	2		2	CCDC33	15	74558912	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	5977012	74558912	27972480	574	36684											
C15orf27	123591	broad.mit.edu	37	chr15	76463279	76463279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctttgcctgactgacccCtggtcccggacacacggcag	11	16	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76463279	A	A	76463279	1	1	19	0	1	0	0	0	0	0	0	0	1801	696	24	2		2	C15orf27	15	76463279	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1904367	76463279	26068113	575	36685											
MESDC1	59274	broad.mit.edu	37	chr15	81295659	81295659	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttaagggagaggtcttcGcccaggactttaccgccagt	12	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81295659	T	T	81295659	2	4	19	1	0	0	0	0	0	0	0	1	9573	1074	38	3		3	MESDC1	15	81295659	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	4832380	81295659	21235733	576	36686											
IL16	3603	broad.mit.edu	37	chr15	81578201	81578201	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgggttatcctcttcttcTcaggctcactcgttcagtac	7	13	5	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81578201	A	A	81578201	1	1	19	0	1	0	0	0	0	0	0	0	7703	1566	54	5		5	IL16	15	81578201	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	282542	81578201	20953191	577	36687											
AP3B2	8120	broad.mit.edu	37	chr15	83350261	83350261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatagctagcatcatgatGggcactatgatgggcacacg	12	8	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83350261	T	T	83350261	2	4	19	1	0	0	0	0	0	0	0	1	747	1335	47	2		2	AP3B2	15	83350261	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1772060	83350261	19181131	578	36688											
FSD2	123722	broad.mit.edu	37	chr15	83451753	83451753	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtaatgtgactcaaagtTttgttcttgttttccaaaat	7	5	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83451753	G	G	83451753	3	3	19	1	0	0	0	0	1	0	0	0	6131	1841	64	5	1529	5	FSD2	15	83451753	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	101492	83451753	19079639	579	36689											
ZNF592	9640	broad.mit.edu	37	chr15	85342390	85342390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacacccccaacagcctgcGcaaacacatccgcaacaacc	4	21	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85342390	T	T	85342390	3	4	19	1	0	0	0	0	1	0	0	0	18149	1087	38	3	3108	3	ZNF592	15	85342390	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1890637	85342390	17189002	580	36690											
ALPK3	57538	broad.mit.edu	37	chr15	85401849	85401849	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaaagcacactgctgCtgctgctaacagcactaccc	7	16	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85401849	T	T	85401849	1	4	19	0	1	0	0	0	0	0	0	0	546	812	28	4		4	ALPK3	15	85401849	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	59459	85401849	17129543	581	36691											
FANCI	55215	broad.mit.edu	37	chr15	89833463	89833463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggttttatgatgttcttcGaaggaactctcagctggcta	12	7	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89833463	T	T	89833463	3	4	19	1	0	0	0	0	1	0	0	0	5726	1058	37	3	1911	3	FANCI	15	89833463	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	4431614	89833463	12697929	582	36692											
PRC1	9055	broad.mit.edu	37	chr15	91522252	91522252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataagcttatcaaacagaggCggtcagcagaaattcagaga	10	7	3	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91522252	T	T	91522252	1	4	19	0	1	0	0	0	0	0	0	0	12552	783	27	4		4	PRC1	15	91522252	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1688789	91522252	11009140	583	36693											
CHD2	1106	broad.mit.edu	37	chr15	93522313	93522313	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatccttctctctttttttgGgggggttggggggtggttca	15	6	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93522313	C	C	93522313	1	2	19	0	1	0	0	0	0	0	0	0	3356	1247	43	4		4	CHD2	15	93522313	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2000061	93522313	9009079	584	36694											
ALDH1A3	220	broad.mit.edu	37	chr15	101447433	101447433	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagccgtgttcacaaaaaaTctcgacaaagccctgaagtt	8	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101447433	C	C	101447433	2	2	19	1	0	0	0	0	0	0	0	1	492	1432	50	5		5	ALDH1A3	15	101447433	Silent	SNP	T	TCGA-05-4420-01A-01D-1265-08	7925120	101447433	1083959	585	36695											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1797083	1797083	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcggcggccgccacaccCagcaccacaggcaccaagtc	9	20	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1797083	T	T	1797083	2	4	19	1	0	0	0	0	0	0	0	1	9378	581	21	4		4	MAPK8IP3	16	1797083	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08		1797083	88557670	586	36696											
CORO7	79585	broad.mit.edu	37	chr16	4408437	4408437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgcaggcaccgcatcagCtccacttcccgcacgtcgca	9	19	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4408437	A	A	4408437	3	1	19	1	0	0	0	0	1	0	0	0	3791	796	28	3	409	3	CORO7	16	4408437	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2611354	4408437	85946316	587	36697											
ABAT	18	broad.mit.edu	37	chr16	8857885	8857885	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggcagggagctgggtcAggcccccagaagtcaccatt	15	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8857885	T	T	8857885	1	4	19	0	1	0	0	0	0	0	0	0	27	203	7	5		5	ABAT	16	8857885	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	4449448	8857885	81496868	588	36698											
USP7	7874	broad.mit.edu	37	chr16	9010502	9010502	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgaaaacctaaactggAtaatcagctattattctcaa	5	7	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9010502	G	G	9010502	1	3	19	0	1	0	0	0	0	0	0	0	17215	348	12	5		5	USP7	16	9010502	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	152617	9010502	81344251	589	36699											
XYLT1	64131	broad.mit.edu	37	chr16	17228249	17228249	+	Intron	DEL	G	-	-													gcattgcagatccctaaagaGgaagaaggacccccactctg							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17228249	-	-	17228249	6	5	19	0	1	1	0	1	0	0	0	0	17590	1015	35	0		0	XYLT1	16	17228249	Intron	DEL	G	TCGA-05-4420-01A-01D-1265-08	8217747	17228249	73126504	590	36700											
UMOD	7369	broad.mit.edu	37	chr16	20355555	20355555	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaggggcatgagaatctGagtaggacttcaaagctaaa	12	5	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20355555	T	T	20355555	1	4	19	0	1	0	0	0	0	0	0	0	17105	1305	45	3		3	UMOD	16	20355555	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	3127306	20355555	69999198	591	36701											
PDILT	204474	broad.mit.edu	37	chr16	20410503	20410503	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaggagactgcgttcctcCaggatgtgcacaggcttggt	13	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20410503	A	A	20410503	2	1	19	1	0	0	0	0	0	0	0	1	11768	581	21	2		2	PDILT	16	20410503	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	54948	20410503	69944250	592	36702											
ACSM2A	123876	broad.mit.edu	37	chr16	20494692	20494692	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgaggtcaggagttcaaGatcagcctggccaacatggt	12	10	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20494692	C	C	20494692	1	2	19	0	1	0	0	0	0	0	0	0	183	957	33	4		4	ACSM2A	16	20494692	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	84189	20494692	69860061	593	36703											
NSMCE1	197370	broad.mit.edu	37	chr16	27246710	27246710	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcattccatcccatctcaaCgcaggggacagcaaccccag	7	16	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27246710	G	G	27246710	1	3	19	0	1	0	0	0	0	0	0	0	10770	551	19	4		4	NSMCE1	16	27246710	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6752018	27246710	63108043	594	36704											
IL4R	3566	broad.mit.edu	37	chr16	27356218	27356218	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtatccctgagaacaacGgaggcgcggggtgcgtgtgc	17	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27356218	T	T	27356218	4	4	19	1	0	0	0	0	0	1	0	0	7768	1117	39	1	248	1	IL4R	16	27356218	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	109508	27356218	62998535	595	36705											
LAT	27040	broad.mit.edu	37	chr16	29000895	29000895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccggagagcggggagagcGcagaagcgtctctgggtgag	19	8	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29000895	T	T	29000895	3	4	19	1	0	0	0	0	1	0	0	0	8716	1087	38	3	770	3	LAT	16	29000895	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1644677	29000895	61353858	596	36706											
ITGAL	3683	broad.mit.edu	37	chr16	30509284	30509284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaaaaaaataataaataGgccggatgcaatgactcatg	7	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30509284	T	T	30509284	1	4	19	0	1	0	0	0	0	0	0	0	7956	1015	35	2		2	ITGAL	16	30509284	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1508389	30509284	59845469	597	36707											
SRCAP	10847	broad.mit.edu	37	chr16	30723216	30723216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaggaggaagaaacaaGtggaagttcagcatcagagg	14	5	3	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30723216	T	T	30723216	3	4	19	1	0	0	0	0	1	0	0	0	15253	1029	36	3	1591	3	SRCAP	16	30723216	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	213932	30723216	59631537	598	36708											
ZNF629	23361	broad.mit.edu	37	chr16	30794657	30794657	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctggtgctgggtcagctccGagctctggatgaagctcttc	14	11	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30794657	T	T	30794657	4	4	19	1	0	0	0	0	0	1	0	0	18180	1059	37	3	1621	3	ZNF629	16	30794657	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	71441	30794657	59560096	599	36709											
ITGAM	3684	broad.mit.edu	37	chr16	31288340	31288340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatcaacatgaccagaGtggattcagacatgaatgat	8	9	3	5			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31288340	T	T	31288340	3	4	19	1	0	0	0	0	1	0	0	0	7957	1029	36	3	1225	3	ITGAM	16	31288340	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	493683	31288340	59066413	600	36710											
ITGAX	3687	broad.mit.edu	37	chr16	31382585	31382585	+	Intron	DEL	G	-	-													aggtggtcctaggttcagatGggggtgcccaccccacgtgg							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31382585	-	-	31382585	6	5	19	0	1	1	0	1	0	0	0	0	7959	1363	47	0		0	ITGAX	16	31382585	Intron	DEL	G	TCGA-05-4420-01A-01D-1265-08	94245	31382585	58972168	601	36711											
SLC38A7	55238	broad.mit.edu	37	chr16	58712724	58712724	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcccataccacctcctgGtaggtcctctcattgctggc	8	16	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58712724	A	A	58712724	2	1	19	1	0	0	0	0	0	0	0	1	14723	1256	44	4		4	SLC38A7	16	58712724	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	27330139	58712724	31642029	602	36712											
GOT2	2806	broad.mit.edu	37	chr16	58742247	58742247	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcccggtacaggggattctCcccggcctgacatggcacag	12	14	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58742247	A	A	58742247	1	1	19	0	1	0	0	0	0	0	0	0	6645	870	30	3		3	GOT2	16	58742247	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	29523	58742247	31612506	603	36713											
FTSJD1	55783	broad.mit.edu	37	chr16	71319391	71319391	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tataaaagctcctggagcttCacaaaggtgtagagaattca	9	7	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71319391	A	A	71319391	4	1	19	1	0	0	0	0	0	1	0	0	6150	835	29	3	1883	3	FTSJD1	16	71319391	Nonsense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	12577144	71319391	19035362	604	36714											
RFWD3	55159	broad.mit.edu	37	chr16	74671949	74671949	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtggcagagttaagttcaTgctatgatgcacgttctttg	12	6	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74671949	A	A	74671949	1	1	19	0	1	0	0	0	0	0	0	0	13369	1479	51	5		5	RFWD3	16	74671949	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	3352558	74671949	15682804	605	36715											
ZC3H18	124245	broad.mit.edu	37	chr16	88675167	88675167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagaaccctttgacttctgGcctgctcttagatgtagttt	8	9	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88675167	A	A	88675167	1	1	19	0	1	0	0	0	0	0	0	0	17694	1218	42	4		4	ZC3H18	16	88675167	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	14003218	88675167	1679586	606	36716											
FANCA	2175	broad.mit.edu	37	chr16	89818580	89818580	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatatcctcatttcctgtgCggccaccaaagaccaaatca	5	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89818580	T	T	89818580	3	4	19	1	0	0	0	0	1	0	0	0	5719	768	27	4	1387	4	FANCA	16	89818580	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1143413	89818580	536173	607	36717											
METT10D	79066	broad.mit.edu	37	chr17	2371202	2371202	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaggactgtgaactaataTtaatgttgcagtggttctaa	9	5	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2371202	C	C	2371202	1	2	19	0	1	0	0	0	0	0	0	0	9583	1508	52	5		5	METT10D	17	2371202	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08		2371202	78824008	608	36718											
CAMKK1	84254	broad.mit.edu	37	chr17	3776861	3776861	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagggaacctctttcctctGtcatgcactcactcgacaaa	7	14	4	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3776861	C	C	3776861	1	2	19	0	1	0	0	0	0	0	0	0	2632	1392	48	4		4	CAMKK1	17	3776861	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1405659	3776861	77418349	609	36719											
ATP2A3	489	broad.mit.edu	37	chr17	3828757	3828757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagaaaaacccaagagcGcgttaagatgtatgtgtaag	12	5	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3828757	A	A	3828757	1	1	19	0	1	0	0	0	0	0	0	0	1142	1102	38	4		4	ATP2A3	17	3828757	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	51896	3828757	77366453	610	36720											
ATP2A3	489	broad.mit.edu	37	chr17	3833795	3833795	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctggtgggtgggaggaggGaagcctcatcctgcccttgg	19	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3833795	A	A	3833795	1	1	19	0	1	0	0	0	0	0	0	0	1142	1189	41	4		4	ATP2A3	17	3833795	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	5038	3833795	77361415	611	36721											
SLC25A11	8402	broad.mit.edu	37	chr17	4842201	4842201	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagccccagtcaggcgctcAaacagcacggtatagatgcc	10	14	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4842201	T	T	4842201	3	4	19	1	0	0	0	0	1	0	0	0	14587	127	5	5	650	5	SLC25A11	17	4842201	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1008406	4842201	76353009	612	36722											
USP6	9098	broad.mit.edu	37	chr17	5038329	5038329	+	Intron	SNP	A	C	C													tgaaaaggatcggtcaactcActgtagaactgggctatttg							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5038329	C	C	5038329	1	2	19	0	1	0	0	0	0	0	0	0	17213	174	6	5		5	USP6	17	5038329	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	196128	5038329	76156881	613	36723	206	2									
USP6	9098	broad.mit.edu	37	chr17	5038335	5038335	+	Intron	SNP	G	C	C													ggatcggtcaactcactgtaGaactgggctatttgcatgtc							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5038335	C	C	5038335	1	2	19	0	1	0	0	0	0	0	0	0	17213	957	33	4		4	USP6	17	5038335	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	6	5038335	76156875	614	36724	206	2									
USP6	9098	broad.mit.edu	37	chr17	5040419	5040419	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgttcatcccatcaggacAaggaaggtctatgcgggcag	12	10	4	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5040419	C	C	5040419	3	2	19	1	0	0	0	0	1	0	0	0	17213	131	5	5	801	5	USP6	17	5040419	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	2084	5040419	76154791	615	36725											
DVL2	1856	broad.mit.edu	37	chr17	7134075	7134075	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacccttccgttgaagcagGggaggcgggcgttgtcatct	14	12	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7134075	A	A	7134075	3	1	19	1	0	0	0	0	1	0	0	0	4876	1232	43	4	2030	4	DVL2	17	7134075	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2093656	7134075	74061135	616	36726											
TP53	7157	broad.mit.edu	37	chr17	7577099	7577099	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcctctgtgcgccggtctCtcccaggacaggcacaaaca	9	16	2	0	rs121912660		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577099	A	A	7577099	3	1	19	1	0	0	0	0	1	0	0	0	16505	913	32	3	447	3	TP53	17	7577099	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	443024	7577099	73618111	617	36727											
PER1	5187	broad.mit.edu	37	chr17	8050972	8050972	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctatccccaacgccagctCgggggcatggcccacttacg	10	18	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8050972	A	A	8050972	1	1	19	0	1	0	0	0	0	0	0	0	11823	899	31	3		3	PER1	17	8050972	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	473873	8050972	73144238	618	36728											
NTN1	9423	broad.mit.edu	37	chr17	9083206	9083206	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcaaggacggcgtgacGggtatcacctgcaaccgctg	13	14	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9083206	T	T	9083206	2	4	19	1	0	0	0	0	0	0	0	1	10795	1103	39	1		1	NTN1	17	9083206	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1032234	9083206	72112004	619	36729											
TRPV2	51393	broad.mit.edu	37	chr17	16323552	16323552	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaagtacctcaccgactcGgaatacacaggtagaccctg	9	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16323552	A	A	16323552	2	1	19	1	0	0	0	0	0	0	0	1	16721	1103	39	4		4	TRPV2	17	16323552	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	7240346	16323552	64871658	620	36730											
ALKBH5	54890	broad.mit.edu	37	chr17	18087755	18087755	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcaggaggactcggacccCgagcgcagcgactatgagga	14	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18087755	T	T	18087755	2	4	19	1	0	0	0	0	0	0	0	1	530	639	23	4		4	ALKBH5	17	18087755	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1764203	18087755	63107455	621	36731											
LLGL1	3996	broad.mit.edu	37	chr17	18133340	18133340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatcggcaccaggtctgGggctgtcaagatgtatcctt	13	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18133340	T	T	18133340	3	4	19	1	0	0	0	0	1	0	0	0	8907	1232	43	2	173	2	LLGL1	17	18133340	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	45585	18133340	63061870	622	36732											
CCL18	6362	broad.mit.edu	37	chr17	34398440	34398440	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccagtgaacttggtggGcccaggagggaacaggagcc	18	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34398440	T	T	34398440	1	4	19	0	1	0	0	0	0	0	0	0	2917	1218	42	3		3	CCL18	17	34398440	3'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	16265100	34398440	46796770	623	36733											
DNAJC7	7266	broad.mit.edu	37	chr17	40169226	40169226	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggtccatccggccttgaTctcagatgggggggtgtttg	18	8	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40169226	C	C	40169226	1	2	19	0	1	0	0	0	0	0	0	0	4694	1450	50	5		5	DNAJC7	17	40169226	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	5770786	40169226	41025984	624	36734											
TUBG2	27175	broad.mit.edu	37	chr17	40818306	40818306	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggacctgcaggggtagaggAgaggccacctccactgctcc	14	13	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40818306	T	T	40818306	1	4	19	0	1	0	0	0	0	0	0	0	16891	319	11	5		5	TUBG2	17	40818306	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	649080	40818306	40376904	625	36735											
AOC3	8639	broad.mit.edu	37	chr17	41004468	41004468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcctccaagaggccttgGccatctatggtggaaattcc	10	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41004468	T	T	41004468	3	4	19	1	0	0	0	0	1	0	0	0	730	1203	42	3	1110	3	AOC3	17	41004468	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	186162	41004468	40190742	626	36736											
DHX8	1659	broad.mit.edu	37	chr17	41570854	41570854	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacatctctgagctccggcGggagggtcgtgtggccaatg	16	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41570854	A	A	41570854	3	1	19	1	0	0	0	0	1	0	0	0	4555	1116	39	4	931	4	DHX8	17	41570854	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	566386	41570854	39624356	627	36737											
ADAM11	4185	broad.mit.edu	37	chr17	42850577	42850577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagacaggccctcctccagCcctggccccaacacccactc	6	22	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42850577	A	A	42850577	1	1	19	0	1	0	0	0	0	0	0	0	235	754	26	3		3	ADAM11	17	42850577	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1279723	42850577	38344633	628	36738											
FMNL1	752	broad.mit.edu	37	chr17	43323120	43323120	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtattcgggtctggggcagGctgggagccctgtagggcac	19	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43323120	A	A	43323120	1	1	19	0	1	0	0	0	0	0	0	0	6009	1218	42	4		4	FMNL1	17	43323120	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	472543	43323120	37872090	629	36739											
NSF	4905	broad.mit.edu	37	chr17	44795249	44795249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgaccgaactggagcagCgttcagaccaactcctggat	11	12	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44795249	T	T	44795249	1	4	19	0	1	0	0	0	0	0	0	0	10766	783	27	4		4	NSF	17	44795249	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1472129	44795249	36399961	630	36740											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46052626	46052626	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcaagaatacagccgcAaggaggaggagtgccaggca	15	9	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46052626	T	T	46052626	4	4	19	1	0	0	0	0	0	1	0	0	3177	131	5	5	458	5	CDK5RAP3	17	46052626	Nonsense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1257377	46052626	35142584	631	36741											
HOXB3	3213	broad.mit.edu	37	chr17	46627838	46627838	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagggggcgccccgttgtagTccaggttcccggaagggtga	17	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46627838	G	G	46627838	3	3	19	1	0	0	0	0	1	0	0	0	7369	1667	58	5	145	5	HOXB3	17	46627838	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	575212	46627838	34567372	632	36742											
RSAD1	55316	broad.mit.edu	37	chr17	48559232	48559232	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaaaatagaactaatattgGagggttacaaagattaaatt	8	2	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48559232	T	T	48559232	1	4	19	0	1	0	0	0	0	0	0	0	13805	1189	41	3		3	RSAD1	17	48559232	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1931394	48559232	32635978	633	36743											
TEX14	56155	broad.mit.edu	37	chr17	56661724	56661724	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagattattttattcatgtcAgtgacatgaaggcacatgct	8	6	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56661724	T	T	56661724	1	4	19	0	1	0	0	0	0	0	0	0	15900	203	7	5		5	TEX14	17	56661724	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	8102492	56661724	24533486	634	36744											
MARCH10	162333	broad.mit.edu	37	chr17	60821966	60821966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaagaacgttcaaagggCccagcaatgtttgggggtgg	14	6	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60821966	A	A	60821966	1	1	19	0	1	0	0	0	0	0	0	0	9391	754	26	3		3	MARCH10	17	60821966	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	4160242	60821966	20373244	635	36745											
ABCA9	10350	broad.mit.edu	37	chr17	67041216	67041216	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagctctatgttgtggttgTatatgtttgtgtagtttcac	10	4	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67041216	A	A	67041216	1	1	19	0	1	0	0	0	0	0	0	0	39	1653	57	5		5	ABCA9	17	67041216	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	6219250	67041216	14153994	636	36746											
ABCA6	23460	broad.mit.edu	37	chr17	67132263	67132263	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttccaaagtggactgtTatatccctggaaaaatatta	6	7	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67132263	C	C	67132263	3	2	19	1	0	0	0	0	1	0	0	0	36	1754	61	5	4567	5	ABCA6	17	67132263	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	91047	67132263	14062947	637	36747											
ABCA5	23461	broad.mit.edu	37	chr17	67302912	67302912	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctttaaaaattcttttaTttttttttctttttctgcta	1	5	4	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67302912	A	A	67302912	3	1	19	1	0	0	0	0	1	0	0	0	35	1493	52	5	4322	5	ABCA5	17	67302912	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	170649	67302912	13892298	638	36748											
GPR142	350383	broad.mit.edu	37	chr17	72368080	72368080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtttgctgccaaccacGcctcagtctggatcgccatc	10	14	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72368080	T	T	72368080	3	4	19	1	0	0	0	0	1	0	0	0	6715	1087	38	3	744	3	GPR142	17	72368080	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	5065168	72368080	8827130	639	36749											
ATP5H	10476	broad.mit.edu	37	chr17	73038509	73038509	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcatcatgaaaatgcaaGgatttctttatatgttgtca	7	5	4	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73038509	A	A	73038509	1	1	19	0	1	0	0	0	0	0	0	0	1160	1015	35	4		4	ATP5H	17	73038509	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	670429	73038509	8156701	640	36750											
LLGL2	3993	broad.mit.edu	37	chr17	73559551	73559551	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgtgccttacggtcagtGtttcacccgccgggcagggc	13	15	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73559551	A	A	73559551	1	1	19	0	1	0	0	0	0	0	0	0	8908	1392	48	4		4	LLGL2	17	73559551	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	521042	73559551	7635659	641	36751											
UBE2O	63893	broad.mit.edu	37	chr17	74394977	74394977	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtccaggtggtgcacaGggaagaggtcgttggagcgg	19	6	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74394977	A	A	74394977	3	1	19	1	0	0	0	0	1	0	0	0	16994	1000	35	4	2190	4	UBE2O	17	74394977	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	835426	74394977	6800233	642	36752											
LAMA1	284217	broad.mit.edu	37	chr18	6966226	6966226	+	Frame_Shift_Del	DEL	C	-	-													gattatctgggtcacggtagCcggaagtgacttctccacga							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6966226	-	-	6966226	7	5	19	1	0	1	0	1	0	0	0	0	8677	739	26	0	2317	0	LAMA1	18	6966226	Frame_Shift_Del	DEL	C	TCGA-05-4420-01A-01D-1265-08		6966226	71111022	643	36753											
LAMA1	284217	broad.mit.edu	37	chr18	6971968	6971968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaatgagtaaccttcaCagcaggagatttctaatgca	7	7	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6971968	A	A	6971968	3	1	19	1	0	0	0	0	1	0	0	0	8677	478	17	3	2504	3	LAMA1	18	6971968	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	5742	6971968	71105280	644	36754											
LAMA1	284217	broad.mit.edu	37	chr18	7080193	7080193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcagtgaaggtgaacaCaatgtttatggcttcctaac	10	7	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7080193	A	A	7080193	1	1	19	0	1	0	0	0	0	0	0	0	8677	493	17	3		3	LAMA1	18	7080193	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	108225	7080193	70997055	645	36755											
APCDD1	147495	broad.mit.edu	37	chr18	10468528	10468528	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcctaggtccttagagAaaagtgcctggagggctttt	11	9	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10468528	C	C	10468528	3	2	19	1	0	0	0	0	1	0	0	0	767	247	9	5	127	5	APCDD1	18	10468528	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	3388335	10468528	67608720	646	36756											
SEH1L	81929	broad.mit.edu	37	chr18	12955608	12955608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgaggacagagccactgGgtgagacatttattagtatt	12	7	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12955608	T	T	12955608	3	4	19	1	0	0	0	0	1	0	0	0	14122	1246	43	2	319	2	SEH1L	18	12955608	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2487080	12955608	65121640	647	36757											
RIOK3	8780	broad.mit.edu	37	chr18	21033225	21033225	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcaagcgactgtcctagCgaagagggcggaagaggaga	16	7	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21033225	A	A	21033225	1	1	19	0	1	0	0	0	0	0	0	0	13490	783	27	3		3	RIOK3	18	21033225	5'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	8077617	21033225	57044023	648	36758											
OSBPL1A	114876	broad.mit.edu	37	chr18	21891860	21891860	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttgtcagaaatcataatttCaaaaccttacatcttaaaga	4	7	4	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21891860	G	G	21891860	1	3	19	0	1	0	0	0	0	0	0	0	11371	841	29	4		4	OSBPL1A	18	21891860	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	858635	21891860	56185388	649	36759											
PSMA8	143471	broad.mit.edu	37	chr18	23714091	23714091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcaggccatcgttaccCtgctgccccagcccaccttt	7	19	1	0	rs79333468	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23714091	A	A	23714091	1	1	19	0	1	0	0	0	0	0	0	0	12779	696	24	2		2	PSMA8	18	23714091	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1822231	23714091	54363157	650	36760											
CDH2	1000	broad.mit.edu	37	chr18	25572694	25572694	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtccagtaggatctccgccActgattctgtacactgcgtt	9	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25572694	C	C	25572694	3	2	19	1	0	0	0	0	1	0	0	0	3135	156	6	5	1483	5	CDH2	18	25572694	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	1858603	25572694	52504554	651	36761											
PIK3C3	5289	broad.mit.edu	37	chr18	39537617	39537617	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaagttctcaggactatatCaagagacatgctctgatctt	8	8	4	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39537617	G	G	39537617	3	3	19	1	0	0	0	0	1	0	0	0	12007	827	29	4	157	4	PIK3C3	18	39537617	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	13964923	39537617	38539631	652	36762											
RIT2	6014	broad.mit.edu	37	chr18	40695491	40695491	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttctacctccatcttaccCgagggaccggaggaaaaaaa	8	11	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40695491	T	T	40695491	1	4	19	0	1	0	0	0	0	0	0	0	13498	667	23	4		4	RIT2	18	40695491	5'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	1157874	40695491	37381757	653	36763											
SETBP1	26040	broad.mit.edu	37	chr18	42618463	42618463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttagggatgccaagtccCcacttaaaagtggaccagac	9	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42618463	A	A	42618463	2	1	19	1	0	0	0	0	0	0	0	1	14242	610	22	2		2	SETBP1	18	42618463	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1922972	42618463	35458785	654	36764											
SLC14A1	6563	broad.mit.edu	37	chr18	43319551	43319551	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactctggggtttcaacagCtctctggcctgcattgcaat	11	11	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43319551	T	T	43319551	2	4	19	1	0	0	0	0	0	0	0	1	14509	796	28	4		4	SLC14A1	18	43319551	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	701088	43319551	34757697	655	36765											
C18orf25	147339	broad.mit.edu	37	chr18	43796093	43796093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaagcctacaactggcCgagtttatgagagtgactcc	11	10	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43796093	A	A	43796093	2	1	19	1	0	0	0	0	0	0	0	1	1917	644	23	1		1	C18orf25	18	43796093	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	476542	43796093	34281155	656	36766											
ACAA2	10449	broad.mit.edu	37	chr18	47340515	47340515	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagggcgctttcgggtcccCattgcagcccccggatgagc	13	15	0	1	rs146918794	by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47340515	A	A	47340515	1	1	19	0	1	0	0	0	0	0	0	0	105	609	21	2		2	ACAA2	18	47340515	5'Flank	SNP	C	TCGA-05-4420-01A-01D-1265-08	3544422	47340515	30736733	657	36767											
ATP8B1	5205	broad.mit.edu	37	chr18	55342315	55342315	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaatgcagagctcattgtTgaggcctctgctgaggctcc	11	11	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55342315	A	A	55342315	1	1	19	0	1	0	0	0	0	0	0	0	1198	1827	63	5		5	ATP8B1	18	55342315	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	8001800	55342315	22734933	658	36768											
RNF152	220441	broad.mit.edu	37	chr18	59483460	59483460	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcggaagtgtgtggaatggcGatgacagccaggacctccgg	16	9	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59483460	A	A	59483460	2	1	19	1	0	0	0	0	0	0	0	1	13564	1048	37	4		4	RNF152	18	59483460	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	4141145	59483460	18593788	659	36769											
SERPINB3	6317	broad.mit.edu	37	chr18	61326622	61326622	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaatgtgggtaggccaGgtgaaattacctgtaaaaat	11	4	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61326622	C	C	61326622	1	2	19	0	1	0	0	0	0	0	0	0	14215	1015	35	4		4	SERPINB3	18	61326622	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1843162	61326622	16750626	660	36770											
SERPINB7	8710	broad.mit.edu	37	chr18	61459667	61459667	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaggatatggaaactcttCtaatagtcaggtaaagacaa	8	7	4	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61459667	A	A	61459667	3	1	19	1	0	0	0	0	1	0	0	0	14219	913	32	3	215	3	SERPINB7	18	61459667	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	133045	61459667	16617581	661	36771											
CDH7	1005	broad.mit.edu	37	chr18	63492010	63492010	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatggtgatggtttgggCatttttaagatttctgttga	14	2	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63492010	A	A	63492010	2	1	19	1	0	0	0	0	0	0	0	1	3145	697	25	3		3	CDH7	18	63492010	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	2032343	63492010	14585238	662	36772											
CYB5A	1528	broad.mit.edu	37	chr18	71958967	71958967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgcgccccaagccgcTcatccccaactcacctcttc	4	23	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71958967	C	C	71958967	1	2	19	0	1	0	0	0	0	0	0	0	4155	1566	54	5		5	CYB5A	18	71958967	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	8466957	71958967	6118281	663	36773											
ZNF236	7776	broad.mit.edu	37	chr18	74583760	74583760	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagccaagccagttaacgCgacacattaggatacacaca	7	11	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74583760	T	T	74583760	4	4	19	1	0	0	0	0	0	1	0	0	17915	760	27	4	658	4	ZNF236	18	74583760	Nonsense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	2624793	74583760	3493488	664	36774											
LMNB2	84823	broad.mit.edu	37	chr19	2438179	2438179	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acctcctcgaacacactcttCcggaagtccagctcctcctg	6	18	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2438179	T	T	2438179	2	4	19	1	0	0	0	0	0	0	0	1	8924	842	30	4		4	LMNB2	19	2438179	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08		2438179	56690804	665	36775											
THOP1	7064	broad.mit.edu	37	chr19	2796159	2796159	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgggccggagaaatggGcttcacctccccagagagac	13	12	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2796159	T	T	2796159	2	4	19	1	0	0	0	0	0	0	0	1	15994	1190	42	3		3	THOP1	19	2796159	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	357980	2796159	56332824	666	36776											
PIP5K1C	23396	broad.mit.edu	37	chr19	3641807	3641807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggtggctcctcctgcggCctgcaggcaatgggaggttg	18	11	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3641807	A	A	3641807	3	1	19	1	0	0	0	0	1	0	0	0	12036	753	26	3	339	3	PIP5K1C	19	3641807	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	845648	3641807	55487176	667	36777											
SEMA6B	10501	broad.mit.edu	37	chr19	4552480	4552480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaccacgggccggccccCgaggctgaccacgcccgtga	14	18	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4552480	A	A	4552480	3	1	19	1	0	0	0	0	1	0	0	0	14153	652	23	1	1755	1	SEMA6B	19	4552480	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	910673	4552480	54576503	668	36778											
KDM4B	23030	broad.mit.edu	37	chr19	5032782	5032782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcctcctggtggccacGgtatttttagcacgctccgt	10	12	0	0	rs75012091	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5032782	T	T	5032782	1	4	19	0	1	0	0	0	0	0	0	0	8199	1131	39	1		1	KDM4B	19	5032782	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	480302	5032782	54096201	669	36779											
GTF2F1	2962	broad.mit.edu	37	chr19	6380768	6380768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctgggcaggaccccaggCtgggcagtgccaggattagg	16	13	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6380768	A	A	6380768	1	1	19	0	1	0	0	0	0	0	0	0	6923	812	28	3		3	GTF2F1	19	6380768	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1347986	6380768	52748215	670	36780											
OR2Z1	284383	broad.mit.edu	37	chr19	8841574	8841574	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatacacccatgtacttcCtgctcagccagctctccctg	5	18	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8841574	T	T	8841574	2	4	19	1	0	0	0	0	0	0	0	1	11130	680	24	4		4	OR2Z1	19	8841574	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	2460806	8841574	50287409	671	36781											
MUC16	94025	broad.mit.edu	37	chr19	9000041	9000041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcacattggtcttagagCcactgcctcctggattccac	9	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9000041	A	A	9000041	1	1	19	0	1	0	0	0	0	0	0	0	10067	754	26	3		3	MUC16	19	9000041	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	158467	9000041	50128942	672	36782											
MUC16	94025	broad.mit.edu	37	chr19	9038556	9038556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatccctcagccagccagaGggaggggaggggcttccacc	14	14	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9038556	T	T	9038556	1	4	19	0	1	0	0	0	0	0	0	0	10067	1015	35	2		2	MUC16	19	9038556	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	38515	9038556	50090427	673	36783											
MUC16	94025	broad.mit.edu	37	chr19	9056168	9056168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgtaggggctgtgggtcCttacttgtcaaccgtgttga	14	7	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9056168	A	A	9056168	1	1	19	0	1	0	0	0	0	0	0	0	10067	696	24	2		2	MUC16	19	9056168	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	17612	9056168	50072815	674	36784											
MUC16	94025	broad.mit.edu	37	chr19	9067228	9067228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagagccaagaggaggacCtgttcgagtgatgatggtca	15	6	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9067228	A	A	9067228	3	1	19	1	0	0	0	0	1	0	0	0	10067	681	24	2	23633	2	MUC16	19	9067228	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	11060	9067228	50061755	675	36785											
MUC16	94025	broad.mit.edu	37	chr19	9073450	9073450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgggaggagagtttgaaaGtctactgctggctactgaga	14	6	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9073450	T	T	9073450	3	4	19	1	0	0	0	0	1	0	0	0	10067	1029	36	3	29855	3	MUC16	19	9073450	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	6222	9073450	50055533	676	36786											
COL5A3	50509	broad.mit.edu	37	chr19	10102485	10102485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacccatggtttccctgCtgtcccggagggcctggttc	14	13	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10102485	A	A	10102485	3	1	19	1	0	0	0	0	1	0	0	0	3730	796	28	3	3491	3	COL5A3	19	10102485	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1029035	10102485	49026498	677	36787											
MAST1	22983	broad.mit.edu	37	chr19	12958030	12958030	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgaccccatcggctttggGagtcccagctcagggtcctg	13	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12958030	A	A	12958030	1	1	19	0	1	0	0	0	0	0	0	0	9416	1189	41	4		4	MAST1	19	12958030	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2855545	12958030	46170953	678	36788											
CACNA1A	773	broad.mit.edu	37	chr19	13410132	13410132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtccgctgctcccacacgGacttggctggcttttgattc	11	13	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13410132	T	T	13410132	3	4	19	1	0	0	0	0	1	0	0	0	2564	1174	41	3	5423	3	CACNA1A	19	13410132	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	452102	13410132	45718851	679	36789											
OR7A10	390892	broad.mit.edu	37	chr19	14952563	14952563	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggccaggatgatgagcaGgttcccgagcacagtgacca	14	10	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14952563	A	A	14952563	2	1	19	1	0	0	0	0	0	0	0	1	11308	991	35	4		4	OR7A10	19	14952563	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1542431	14952563	44176420	680	36790											
CYP4F8	11283	broad.mit.edu	37	chr19	15726466	15726466	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggctgggcctcaggccGgtggcagcatccccgtggct	15	14	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15726466	T	T	15726466	2	4	19	1	0	0	0	0	0	0	0	1	4224	1103	39	1		1	CYP4F8	19	15726466	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	773903	15726466	43402517	681	36791											
CYP4F12	66002	broad.mit.edu	37	chr19	15791346	15791346	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttgtgagtcccttgaagtCtgggtcccagatggagtctt	13	9	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15791346	A	A	15791346	1	1	19	0	1	0	0	0	0	0	0	0	4220	928	32	3		3	CYP4F12	19	15791346	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	64880	15791346	43337637	682	36792											
FCHO1	23149	broad.mit.edu	37	chr19	17895113	17895113	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagccggcagcagacatGgaggcgcctgcgtgttggcc	18	11	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17895113	A	A	17895113	1	1	19	0	1	0	0	0	0	0	0	0	5844	1363	47	4		4	FCHO1	19	17895113	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	2103767	17895113	41233870	683	36793											
GATAD2A	54815	broad.mit.edu	37	chr19	19603056	19603056	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccatgtgtccacaggGgtgggcactgggtccagctg	15	13	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19603056	A	A	19603056	1	1	19	0	1	0	0	0	0	0	0	0	6322	1247	43	4		4	GATAD2A	19	19603056	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1707943	19603056	39525927	684	36794											
ZNF14	7561	broad.mit.edu	37	chr19	19823805	19823805	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgctccagtaaaagtTtccttgttgatattaacatt	7	6	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19823805	C	C	19823805	2	2	19	1	0	0	0	0	0	0	0	1	17854	1838	64	5		5	ZNF14	19	19823805	Silent	SNP	T	TCGA-05-4420-01A-01D-1265-08	220749	19823805	39305178	685	36795											
TSHZ3	57616	broad.mit.edu	37	chr19	31768945	31768945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggtctggtttttcgtcGgggagacaatctcactgttg	13	9	2	1	rs61747224	byFrequency;by1000genomes	TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768945	T	T	31768945	3	4	19	1	0	0	0	0	1	0	0	0	16750	1116	39	1	1495	1	TSHZ3	19	31768945	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	11945140	31768945	27360038	686	36796											
TSHZ3	57616	broad.mit.edu	37	chr19	31769102	31769102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctgggccttgttgattgCggatgtcactgtgttttcca	12	8	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31769102	T	T	31769102	3	4	19	1	0	0	0	0	1	0	0	0	16750	768	27	4	1652	4	TSHZ3	19	31769102	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	157	31769102	27359881	687	36797											
SLC7A10	56301	broad.mit.edu	37	chr19	33703293	33703293	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggccagggccaggtgtccCacggagggcgtcatccagaa	15	12	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33703293	A	A	33703293	2	1	19	1	0	0	0	0	0	0	0	1	14807	581	21	2		2	SLC7A10	19	33703293	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	1934191	33703293	25425690	688	36798											
PEPD	5184	broad.mit.edu	37	chr19	33991872	33991872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtactggacgtcgtccacgGcatacttctccttgaagtgc	10	13	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33991872	A	A	33991872	3	1	19	1	0	0	0	0	1	0	0	0	11822	1203	42	4	1164	4	PEPD	19	33991872	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	288579	33991872	25137111	689	36799											
KIAA0355	9710	broad.mit.edu	37	chr19	34838704	34838704	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcattgcatgtgtgaccaGcacgttagcaaagcgtaggg	12	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34838704	A	A	34838704	1	1	19	0	1	0	0	0	0	0	0	0	8240	986	34	4		4	KIAA0355	19	34838704	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	846832	34838704	24290279	690	36800											
USF2	7392	broad.mit.edu	37	chr19	35761990	35761990	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcctcttgtagaaaaAttgatggaaccagaacaccc	6	11	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35761990	G	G	35761990	3	3	19	1	0	0	0	0	1	0	0	0	17159	101	4	5	699	5	USF2	19	35761990	Missense_Mutation	SNP	A	TCGA-05-4420-01A-01D-1265-08	923286	35761990	23366993	691	36801											
MAG	4099	broad.mit.edu	37	chr19	35793624	35793624	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggagtgtgagtaccttcCgctcccctatgctggggatg	14	10	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35793624	T	T	35793624	1	4	19	0	1	0	0	0	0	0	0	0	9250	667	23	4		4	MAG	19	35793624	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	31634	35793624	23335359	692	36802											
ZNF793	390927	broad.mit.edu	37	chr19	38014430	38014432	+	Intron	DEL	GTA	-	-													ggaaaaaaagggtgtgcattGtaagtatgtacagtttgtac							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38014432	-	-	38014430	6	5	19	0	1	1	0	1	0	0	0	0	18294	1392	48	0		0	ZNF793	19	38014430	Intron	DEL	GTA	TCGA-05-4420-01A-01D-1265-08	2220806	38014430	21114553	693	36803											
MAP4K1	11184	broad.mit.edu	37	chr19	39105150	39105150	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaacctgggctggggagtCctgcccccccacaccagcta	13	16	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39105150	A	A	39105150	1	1	19	0	1	0	0	0	0	0	0	0	9351	870	30	3		3	MAP4K1	19	39105150	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1090720	39105150	20023833	694	36804											
CYP2B6	1555	broad.mit.edu	37	chr19	41510205	41510205	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcccctgcaccccaggtgTgatctttgccaatggaaacc	8	16	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41510205	A	A	41510205	3	1	19	1	0	0	0	0	1	0	0	0	4197	1696	59	5	348	5	CYP2B6	19	41510205	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	2405055	41510205	17618778	695	36805											
CYP2A13	1553	broad.mit.edu	37	chr19	41600880	41600880	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggcactgaagtgttccCtatgctgggctccgtgctga	13	12	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41600880	T	T	41600880	3	4	19	1	0	0	0	0	1	0	0	0	4194	681	24	4	1208	4	CYP2A13	19	41600880	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	90675	41600880	17528103	696	36806											
PSG3	5671	broad.mit.edu	37	chr19	43228127	43228127	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatacagaaatgacatcAcggctgctataatggattaa	8	6	1	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43228127	G	G	43228127	1	3	19	0	1	0	0	0	0	0	0	0	12762	174	6	5		5	PSG3	19	43228127	3'UTR	SNP	A	TCGA-05-4420-01A-01D-1265-08	1627247	43228127	15900856	697	36807											
PSG9	5678	broad.mit.edu	37	chr19	43757877	43757877	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcttctttcctacaggctCccaggaagggtgtgaaagca	11	10	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43757877	A	A	43757877	1	1	19	0	1	0	0	0	0	0	0	0	12768	870	30	3		3	PSG9	19	43757877	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	529750	43757877	15371106	698	36808											
C19orf61	56006	broad.mit.edu	37	chr19	44251711	44251711	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggagattggagaaagcaGgagacagaggatgcagtgag	18	4	0	5			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44251711	C	C	44251711	1	2	19	0	1	0	0	0	0	0	0	0	1962	1015	35	4		4	C19orf61	19	44251711	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	493834	44251711	14877272	699	36809											
CGB	1082	broad.mit.edu	37	chr19	49535639	49535639	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtgtccgggtggtgggtCctgaataggagatgccacga	17	8	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49535639	A	A	49535639	1	1	19	0	1	0	0	0	0	0	0	0	3326	870	30	3		3	CGB	19	49535639	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	5283928	49535639	9593344	700	36810											
KLK6	5653	broad.mit.edu	37	chr19	51470295	51470295	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtactcaattaagcaacagcCgaatgcacctggctatcaga	8	11	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51470295	G	G	51470295	1	3	19	0	1	0	0	0	0	0	0	0	8479	667	23	4		4	KLK6	19	51470295	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1934656	51470295	7658688	701	36811											
ZNF614	80110	broad.mit.edu	37	chr19	52519539	52519539	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataataagagtgcgctttgTggtgaagcctttaccacatt	9	7	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52519539	C	C	52519539	3	2	19	1	0	0	0	0	1	0	0	0	18166	1696	59	5	449	5	ZNF614	19	52519539	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	1049244	52519539	6609444	702	36812											
ZNF665	79788	broad.mit.edu	37	chr19	53669109	53669109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaacagtaaaggctttgcCacacttattacactggtaag	8	9	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53669109	A	A	53669109	3	1	19	1	0	0	0	0	1	0	0	0	18200	594	21	2	1406	2	ZNF665	19	53669109	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1149570	53669109	5459874	703	36813											
ZNF765	91661	broad.mit.edu	37	chr19	53878905	53878905	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaaaaccccttactcggAtttgtcagaacattcactgc	7	11	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53878905	T	T	53878905	1	4	19	0	1	0	0	0	0	0	0	0	18268	348	12	5		5	ZNF765	19	53878905	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	209796	53878905	5250078	704	36814											
KIR3DL1	3811	broad.mit.edu	37	chr19	55377868	55377868	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcgggggacagaacagtGaataggcaggtaggtcctcc	15	10	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55377868	T	T	55377868	2	4	19	1	0	0	0	0	0	0	0	1	8391	1277	45	3		3	KIR3DL1	19	55377868	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1498963	55377868	3751115	705	36815											
TNNI3	7137	broad.mit.edu	37	chr19	55666160	55666160	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcgtatctctcttcatcCaccttgtccacacgggcgtg	8	14	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55666160	A	A	55666160	2	1	19	1	0	0	0	0	0	0	0	1	16451	581	21	2		2	TNNI3	19	55666160	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	288292	55666160	3462823	706	36816											
U2AF2	11338	broad.mit.edu	37	chr19	56174085	56174085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgtgctgtttccaccaGgccctctgcagcctcttctc	8	17	3	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56174085	T	T	56174085	1	4	19	0	1	0	0	0	0	0	0	0	16949	1015	35	2		2	U2AF2	19	56174085	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	507925	56174085	2954898	707	36817											
ZNF667	63934	broad.mit.edu	37	chr19	56973649	56973649	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatggaaggaaagcaaatgGtccacatctcacaagacacg	9	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56973649	C	C	56973649	1	2	19	0	1	0	0	0	0	0	0	0	18201	1276	44	4		4	ZNF667	19	56973649	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	799564	56973649	2155334	708	36818											
ZIM3	114026	broad.mit.edu	37	chr19	57647586	57647586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctaatgtctacgagaaacCaaagttaatataagctctgt	6	8	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57647586	A	A	57647586	1	1	19	0	1	0	0	0	0	0	0	0	17811	609	21	2		2	ZIM3	19	57647586	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	673937	57647586	1481397	709	36819											
ZNF550	162972	broad.mit.edu	37	chr19	58058519	58058519	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagggcttctccccagtgtGaatccgctggtgctgtatga	12	10	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58058519	A	A	58058519	3	1	19	1	0	0	0	0	1	0	0	0	18109	1290	45	4	179	4	ZNF550	19	58058519	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	410933	58058519	1070464	710	36820											
UBOX5	22888	broad.mit.edu	37	chr20	3095893	3095893	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactcggcccagcatccagAgacagaaaacagaccaccca	9	15	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3095893	C	C	3095893	1	2	19	0	1	0	0	0	0	0	0	0	17020	319	11	5		5	UBOX5	20	3095893	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08		3095893	59929627	711	36821											
C20orf103	24141	broad.mit.edu	37	chr20	9510440	9510440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgcagatccctcgggaCagatcccagtataagcacat	10	12	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9510440	A	A	9510440	3	1	19	1	0	0	0	0	1	0	0	0	2097	477	17	3	838	3	C20orf103	20	9510440	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	6414547	9510440	53515080	712	36822											
PAK7	57144	broad.mit.edu	37	chr20	9520105	9520105	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgccacctacacgaatcctCtgctcagtgatgcctgtatt	7	13	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9520105	A	A	9520105	1	1	19	0	1	0	0	0	0	0	0	0	11499	928	32	3		3	PAK7	20	9520105	3'UTR	SNP	C	TCGA-05-4420-01A-01D-1265-08	9665	9520105	53505415	713	36823											
MKKS	8195	broad.mit.edu	37	chr20	10393066	10393066	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagaaatgatactgacaCatgctgggtcaatttttcaa	8	8	2	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10393066	A	A	10393066	1	1	19	0	1	0	0	0	0	0	0	0	9693	493	17	3		3	MKKS	20	10393066	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	872961	10393066	52632454	714	36824											
ACSS1	84532	broad.mit.edu	37	chr20	24990221	24990221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtggcagcgattctaaCagctccacagatgttccagg	10	10	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24990221	A	A	24990221	1	1	19	0	1	0	0	0	0	0	0	0	188	493	17	3		3	ACSS1	20	24990221	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	14597155	24990221	38035299	715	36825											
DUSP15	128853	broad.mit.edu	37	chr20	30436639	30436639	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagctgctccttggggtgCtgtgtggggcccgggtcctc	17	11	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30436639	T	T	30436639	2	4	19	1	0	0	0	0	0	0	0	1	4855	812	28	4		4	DUSP15	20	30436639	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	5446418	30436639	32588881	716	36826											
SUN5	140732	broad.mit.edu	37	chr20	31590615	31590615	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtttgacatccctgagCctcagcccctcagctgccca	8	19	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31590615	G	G	31590615	1	3	19	0	1	0	0	0	0	0	0	0	15512	754	26	4		4	SUN5	20	31590615	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1153976	31590615	31434905	717	36827											
AHCY	191	broad.mit.edu	37	chr20	32880131	32880131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggccccacccaggccacCagcacccagcccacctgccc	7	24	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32880131	A	A	32880131	1	1	19	0	1	0	0	0	0	0	0	0	409	609	21	2		2	AHCY	20	32880131	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1289516	32880131	30145389	718	36828											
GSS	2937	broad.mit.edu	37	chr20	33523482	33523482	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggctgctgtgttaaatTataactgatttgttcagtgg	11	4	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33523482	G	G	33523482	1	3	19	0	1	0	0	0	0	0	0	0	6895	1769	61	5		5	GSS	20	33523482	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	643351	33523482	29502038	719	36829											
EDEM2	55741	broad.mit.edu	37	chr20	33703271	33703271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacctgtcccagtaatgCcaacttggaggtgaagggct	12	9	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33703271	A	A	33703271	3	1	19	1	0	0	0	0	1	0	0	0	4952	739	26	3	38	3	EDEM2	20	33703271	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	179789	33703271	29322249	720	36830											
EDEM2	55741	broad.mit.edu	37	chr20	33711807	33711807	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagtagttgaggaaggtccTcatggcattgtcaatgtctc	12	7	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33711807	A	A	33711807	3	1	19	1	0	0	0	0	1	0	0	0	4952	1550	54	5	748	5	EDEM2	20	33711807	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	8536	33711807	29313713	721	36831											
C20orf118	140711	broad.mit.edu	37	chr20	35506114	35506114	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggggccagggaggaaGcaggctggcggcaggggcag	23	8	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35506114	A	A	35506114	1	1	19	0	1	0	0	0	0	0	0	0	2106	986	34	4		4	C20orf118	20	35506114	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1794307	35506114	27519406	722	36832											
KIAA1755	85449	broad.mit.edu	37	chr20	36868870	36868870	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacactgtatactaaacCcctgaagctgagccagccca	7	15	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36868870	A	A	36868870	1	1	19	0	1	0	0	0	0	0	0	0	8327	638	22	2		2	KIAA1755	20	36868870	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1362756	36868870	26156650	723	36833											
MMP9	4318	broad.mit.edu	37	chr20	44639923	44639923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccacggccaactacgacaCcgacgaccggtttggcttct	9	15	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44639923	A	A	44639923	3	1	19	1	0	0	0	0	1	0	0	0	9763	507	18	3	809	3	MMP9	20	44639923	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	7771053	44639923	18385597	724	36834											
ZNF334	55713	broad.mit.edu	37	chr20	45131753	45131753	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtctagaaaaaggaacacAattaacggtaattggtgagc	10	5	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45131753	C	C	45131753	1	2	19	0	1	0	0	0	0	0	0	0	17977	145	5	5		5	ZNF334	20	45131753	Intron	SNP	A	TCGA-05-4420-01A-01D-1265-08	491830	45131753	17893767	725	36835											
ZMYND8	23613	broad.mit.edu	37	chr20	45976743	45976743	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggggcagctatttggaagTtctagcaacaaacacacctt	10	9	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45976743	C	C	45976743	1	2	19	0	1	0	0	0	0	0	0	0	17837	1740	60	5		5	ZMYND8	20	45976743	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	844990	45976743	17048777	726	36836											
NCOA3	8202	broad.mit.edu	37	chr20	46271154	46271154	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcattaacatggaagtagGagagtgtatatttgtgtgtg	13	2	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46271154	T	T	46271154	1	4	19	0	1	0	0	0	0	0	0	0	10325	1189	41	3		3	NCOA3	20	46271154	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	294411	46271154	16754366	727	36837											
BCAS1	8537	broad.mit.edu	37	chr20	52583307	52583307	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaagggaattttctcaCtatgcaatccatattccatt	6	8	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52583307	G	G	52583307	1	3	19	0	1	0	0	0	0	0	0	0	1355	580	20	4		4	BCAS1	20	52583307	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6312153	52583307	10442213	728	36838											
PPP1R3D	5509	broad.mit.edu	37	chr20	58514323	58514323	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcgggcccgcgccaccGcgccaccgcctcgtgggtac	14	20	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514323	A	A	58514323	3	1	19	1	0	0	0	0	1	0	0	0	12475	1086	38	4	239	4	PPP1R3D	20	58514323	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	5931016	58514323	4511197	729	36839											
PRIC285	85441	broad.mit.edu	37	chr20	62192981	62192981	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggttcggcctcccctccCgggggctcttcctgagcagc	12	17	2	1	rs143065747		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62192981	T	T	62192981	3	4	19	1	0	0	0	0	1	0	0	0	12591	652	23	4	1172	4	PRIC285	20	62192981	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	3678658	62192981	832539	730	36840											
ITSN1	6453	broad.mit.edu	37	chr21	35140006	35140006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctatttttctttttcccCgcaattgcagaagagttcga	6	9	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35140006	T	T	35140006	1	4	19	0	1	0	0	0	0	0	0	0	7996	667	23	4		4	ITSN1	21	35140006	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08		35140006	12989889	731	36841											
DSCAM	1826	broad.mit.edu	37	chr21	41648050	41648050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgaggtacatggacttgCtgacgtctgcgcccacatcg	12	13	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41648050	T	T	41648050	3	4	19	1	0	0	0	0	1	0	0	0	4808	797	28	4	3800	4	DSCAM	21	41648050	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	6508044	41648050	6481845	732	36842											
UMODL1	89766	broad.mit.edu	37	chr21	43505485	43505485	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaactccagcaagtggaccCcaggctcctgaaccacatgc	10	15	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43505485	G	G	43505485	3	3	19	1	0	0	0	0	1	0	0	0	17106	623	22	4	580	4	UMODL1	21	43505485	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	1857435	43505485	4624410	733	36843											
UMODL1	89766	broad.mit.edu	37	chr21	43539056	43539056	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggcgtttgtgctgggcttGaaaacacagcagacaggaaa	13	8	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43539056	T	T	43539056	1	4	19	0	1	0	0	0	0	0	0	0	17106	1305	45	3		3	UMODL1	21	43539056	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	33571	43539056	4590839	734	36844											
CCT8L2	150160	broad.mit.edu	37	chr22	17072655	17072655	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagctagatcagcaggactAgaaagacgggccgttgctgg	15	8	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17072655	G	G	17072655	2	3	19	1	0	0	0	0	0	0	0	1	2991	407	15	5		5	CCT8L2	22	17072655	Silent	SNP	A	TCGA-05-4420-01A-01D-1265-08		17072655	34231911	735	36845											
UFD1L	7353	broad.mit.edu	37	chr22	19443986	19443986	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagatttgcatatgcaCaggtacccagaggcctaacc	11	11	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19443986	T	T	19443986	1	4	19	0	1	0	0	0	0	0	0	0	17061	493	17	4		4	UFD1L	22	19443986	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	2371331	19443986	31860580	736	36846											
SLC7A4	6545	broad.mit.edu	37	chr22	21384144	21384144	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaaagacaagcacgcaGcctatggtgatggctgaggc	12	11	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21384144	C	C	21384144	2	2	19	1	0	0	0	0	0	0	0	1	14813	958	34	4		4	SLC7A4	22	21384144	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1940158	21384144	29920422	737	36847											
MAPK1	5594	broad.mit.edu	37	chr22	22160348	22160348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttgcacaggttaaggTaaaacaccaattagctggtc	9	8	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22160348	A	A	22160348	1	1	19	0	1	0	0	0	0	0	0	0	9363	1653	57	5		5	MAPK1	22	22160348	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	776204	22160348	29144218	738	36848											
IGLL1	3543	broad.mit.edu	37	chr22	23917154	23917154	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaagttagagccacttacTtaaaacggtgagctgggtcc	13	8	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23917154	C	C	23917154	3	2	19	1	0	0	0	0	1	0	0	0	7663	1623	56	5	327	5	IGLL1	22	23917154	Missense_Mutation	SNP	T	TCGA-05-4420-01A-01D-1265-08	1756806	23917154	27387412	739	36849											
CRYBA4	1413	broad.mit.edu	37	chr22	27021578	27021578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctccttccggcctgcgGcctgtgctgtaagttctacc	9	16	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27021578	T	T	27021578	3	4	19	1	0	0	0	0	1	0	0	0	3941	1203	42	3	302	3	CRYBA4	22	27021578	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	3104424	27021578	24282988	740	36850											
THOC5	8563	broad.mit.edu	37	chr22	29932483	29932483	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacaccaactgggtagggaTgcagacaaggccatccttat	10	11	1	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29932483	C	C	29932483	1	2	19	0	1	0	0	0	0	0	0	0	15991	1479	51	5		5	THOC5	22	29932483	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	2910905	29932483	21372083	741	36851											
APOBEC3F	200316	broad.mit.edu	37	chr22	39445311	39445311	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctttctctctcccagtctTtctgcctgggaaagcagcag	8	14	5	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39445311	A	A	39445311	1	1	19	0	1	0	0	0	0	0	0	0	795	1856	64	5		5	APOBEC3F	22	39445311	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	9512828	39445311	11859255	742	36852											
FAM83F	113828	broad.mit.edu	37	chr22	40417816	40417816	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccggggggaggccgccccCgccaggcgcttcagcagcag	17	17	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40417816	A	A	40417816	2	1	19	1	0	0	0	0	0	0	0	1	5691	639	23	1		1	FAM83F	22	40417816	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08	972505	40417816	10886750	743	36853											
EFCAB6	64800	broad.mit.edu	37	chr22	44073794	44073794	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaatttatttaaaccataTttcacttgcatctcttatta	2	7	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44073794	G	G	44073794	1	3	19	0	1	0	0	0	0	0	0	0	4979	1508	52	5		5	EFCAB6	22	44073794	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	3655978	44073794	7230772	744	36854											
PARVB	29780	broad.mit.edu	37	chr22	44553945	44553945	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacttctacctgactccGgaaagcttcgatcagaaggt	8	13	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44553945	A	A	44553945	2	1	19	1	0	0	0	0	0	0	0	1	11563	1103	39	4		4	PARVB	22	44553945	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	480151	44553945	6750621	745	36855											
RIBC2	26150	broad.mit.edu	37	chr22	45818415	45818415	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtcacatgaccggccCtgacagagaccctgatgggc	12	15	1	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45818415	T	T	45818415	1	4	19	0	1	0	0	0	0	0	0	0	13462	696	24	4		4	RIBC2	22	45818415	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	1264470	45818415	5486151	746	36856											
CSF2RA	1438	broad.mit.edu	37	chrX	1409524	1409524	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctcagcactttgggaggccGaggcgggccgatcacctgag	15	12	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1409524	A	A	1409524	1	1	19	0	1	0	0	0	0	0	0	0	3968	1073	37	4		4	CSF2RA	23	1409524	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08		1409524	153861036	747	36857											
CDKL5	6792	broad.mit.edu	37	chrX	18668587	18668587	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactccgtgcgtcccaaaccGagcccttcatcgtccaatct	6	18	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18668587	A	A	18668587	3	1	19	1	0	0	0	0	1	0	0	0	3187	1058	37	4	2929	4	CDKL5	23	18668587	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	17259063	18668587	136601973	748	36858											
POLA1	5422	broad.mit.edu	37	chrX	24760000	24760000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttaaaaaaaaaGcagaccgttattaggaatag	6	3	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24760000	T	T	24760000	1	4	19	0	1	0	0	0	0	0	0	0	12282	986	34	3		3	POLA1	23	24760000	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	6091413	24760000	130510560	749	36859											
FAM47B	170062	broad.mit.edu	37	chrX	34961142	34961142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgctacgcctgtcagtctcCtgaagatacgcttgtttgtc	9	13	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34961142	A	A	34961142	3	1	19	1	0	0	0	0	1	0	0	0	5621	681	24	2	196	2	FAM47B	23	34961142	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	10201142	34961142	120309418	750	36860											
CASK	8573	broad.mit.edu	37	chrX	41414907	41414907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtagaataaagccaacCcaggagaaaaattttcattt	6	8	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41414907	A	A	41414907	1	1	19	0	1	0	0	0	0	0	0	0	2691	638	22	2		2	CASK	23	41414907	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	6453765	41414907	113855653	751	36861											
DGKK	139189	broad.mit.edu	37	chrX	50134350	50134350	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatgaggctctatcaatcaGagaggttaaagtattcctga	9	6	3	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50134350	T	T	50134350	1	4	19	0	1	0	0	0	0	0	0	0	4512	957	33	3		3	DGKK	23	50134350	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	8719443	50134350	105136210	752	36862											
KDM5C	8242	broad.mit.edu	37	chrX	53239923	53239923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaaaggctgagaagacCatgcccacgtagagccaggg	13	11	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53239923	A	A	53239923	3	1	19	1	0	0	0	0	1	0	0	0	8205	594	21	2	3326	2	KDM5C	23	53239923	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	3105573	53239923	102030637	753	36863											
WNK3	65267	broad.mit.edu	37	chrX	54359453	54359453	+	Intron	DEL	G	-	-													gaccataatttctaggatgtGggggacaagccctttatttt							TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54359453	-	-	54359453	6	5	19	0	1	1	0	1	0	0	0	0	17506	1363	47	0		0	WNK3	23	54359453	Intron	DEL	G	TCGA-05-4420-01A-01D-1265-08	1119530	54359453	100911107	754	36864											
EDA	1896	broad.mit.edu	37	chrX	69253205	69253205	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattttctgttgcctcgatTattctgacatgtactgagtg	8	7	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69253205	G	G	69253205	1	3	19	0	1	0	0	0	0	0	0	0	4943	1769	61	5		5	EDA	23	69253205	Intron	SNP	T	TCGA-05-4420-01A-01D-1265-08	14893752	69253205	86017355	755	36865											
TEX11	56159	broad.mit.edu	37	chrX	70127484	70127484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccctgacctcgtgatcCgcccgcctcggcctcccaaa	9	20	0	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70127484	A	A	70127484	1	1	19	0	1	0	0	0	0	0	0	0	15896	667	23	1		1	TEX11	23	70127484	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	874279	70127484	85143076	756	36866											
MED12	9968	broad.mit.edu	37	chrX	70360812	70360812	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaaggcagtgtaccaaaaCacctagcagagcggctggcc	11	12	0	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70360812	T	T	70360812	1	4	19	0	1	0	0	0	0	0	0	0	9521	493	17	4		4	MED12	23	70360812	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	233328	70360812	84909748	757	36867											
COL4A6	1288	broad.mit.edu	37	chrX	107457580	107457580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgttcactcccttagcCccatcatgtatgtttgcatg	6	13	2	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107457580	A	A	107457580	1	1	19	0	1	0	0	0	0	0	0	0	3727	638	22	2		2	COL4A6	23	107457580	Intron	SNP	C	TCGA-05-4420-01A-01D-1265-08	37096768	107457580	47812980	758	36868											
GPR112	139378	broad.mit.edu	37	chrX	135430553	135430553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggcctatgtctgagatgtCctcaataccagttaataact	8	9	2	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135430553	A	A	135430553	3	1	19	1	0	0	0	0	1	0	0	0	6694	855	30	3	4698	3	GPR112	23	135430553	Missense_Mutation	SNP	C	TCGA-05-4420-01A-01D-1265-08	27972973	135430553	19840007	759	36869											
SLITRK2	84631	broad.mit.edu	37	chrX	144904510	144904510	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgacccacttagacctcagGgggaataggctaaaagtaat	10	9	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144904510	C	C	144904510	3	2	19	1	0	0	0	0	1	0	0	0	14857	1223	43	4	569	4	SLITRK2	23	144904510	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	9473957	144904510	10366050	760	36870											
SLITRK2	84631	broad.mit.edu	37	chrX	144906366	144906366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttttatatggaactcccaGgaaatgctttgtggggcagt	12	7	0	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144906366	T	T	144906366	3	4	19	1	0	0	0	0	1	0	0	0	14857	1000	35	2	2425	2	SLITRK2	23	144906366	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	1856	144906366	10364194	761	36871											
CXorf1	9142	broad.mit.edu	37	chrX	144909198	144909198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatgaaattatttgaatGtattccagactattttattt	4	3	0	3			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144909198	T	T	144909198	3	4	19	1	0	0	0	0	1	0	0	0	4133	1377	48	3	5	3	CXorf1	23	144909198	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2832	144909198	10361362	762	36872											
FMR1NB	158521	broad.mit.edu	37	chrX	147106432	147106432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaacagagttgtaacggGtttgaagaaacaaagaagga	13	4	0	4			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147106432	T	T	147106432	3	4	19	1	0	0	0	0	1	0	0	0	6019	1261	44	3	698	3	FMR1NB	23	147106432	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2197234	147106432	8164128	763	36873											
MTM1	4534	broad.mit.edu	37	chrX	149783137	149783137	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaggcgcgacaagtagaGgagaaaattcctatggtcta	14	6	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149783137	T	T	149783137	4	4	19	1	0	0	0	0	0	1	0	0	10031	1001	35	2	321	2	MTM1	23	149783137	Nonsense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	2676705	149783137	5487423	764	36874											
PASD1	139135	broad.mit.edu	37	chrX	150832577	150832577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtcatgaactcccctgtGctttcttcctcagccttatc	5	14	3	1			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150832577	T	T	150832577	1	4	19	0	1	0	0	0	0	0	0	0	11565	1334	46	3		3	PASD1	23	150832577	Intron	SNP	G	TCGA-05-4420-01A-01D-1265-08	1049440	150832577	4437983	765	36875											
FATE1	89885	broad.mit.edu	37	chrX	150891346	150891346	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccagcagccctcaggagcGtcaggatcattttcaactct	8	14	5	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150891346	A	A	150891346	1	1	19	0	1	0	0	0	0	0	0	0	5750	1160	40	4		4	FATE1	23	150891346	3'UTR	SNP	G	TCGA-05-4420-01A-01D-1265-08	58769	150891346	4379214	766	36876											
CNGA2	1260	broad.mit.edu	37	chrX	150908126	150908126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattcctcgagcgttttcGtgggcctgaactccagactg	10	13	1	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150908126	T	T	150908126	3	4	19	1	0	0	0	0	1	0	0	0	3629	1145	40	3	306	3	CNGA2	23	150908126	Missense_Mutation	SNP	G	TCGA-05-4420-01A-01D-1265-08	16780	150908126	4362434	767	36877											
GABRA3	2556	broad.mit.edu	37	chrX	151424261	151424261	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctctgacctcattgtataGaggagggttccgttgtccac	10	11	2	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151424261	T	T	151424261	2	4	19	1	0	0	0	0	0	0	0	1	6222	929	33	3		3	GABRA3	23	151424261	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	516135	151424261	3846299	768	36878											
PDZD4	57595	broad.mit.edu	37	chrX	153069678	153069678	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggctccacaagcagcggGgtgctgcggcagctctcccc	15	15	1	0			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153069678	A	A	153069678	2	1	19	1	0	0	0	0	0	0	0	1	11797	1219	43	4		4	PDZD4	23	153069678	Silent	SNP	G	TCGA-05-4420-01A-01D-1265-08	1645417	153069678	2200882	769	36879											
NLGN4Y	22829	broad.mit.edu	37	chrY	16941629	16941629	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtctcttccagaaggccatCattcagagcggcactgccct	10	14	3	2			TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16941629	T	T	16941629	2	4	19	1	0	0	0	0	0	0	0	1	10560	816	29	4		4	NLGN4Y	24	16941629	Silent	SNP	C	TCGA-05-4420-01A-01D-1265-08		16941629	42431937	770	36880											
SEPN1	57190	broad.mit.edu	37	chr1	26136166	26136166	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggtgcagcagatccccttCcccacaggatccatgccgag	10	16	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26136166	A	A	26136166	1	1	20	0	1	0	0	0	0	0	0	0	14169	870	30	3		3	SEPN1	1	26136166	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08		26136166	223114455	1	36881											
TMEM54	113452	broad.mit.edu	37	chr1	33366802	33366802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtggttcggggcctcCcgcgcgcccccagtcgctca	15	16	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33366802	A	A	33366802	1	1	20	0	1	0	0	0	0	0	0	0	16303	638	22	2		2	TMEM54	1	33366802	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	7230636	33366802	215883819	2	36882											
KANK4	163782	broad.mit.edu	37	chr1	62739326	62739326	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaggaggtaaggacctgctCgggtccctgtggcagtgaca	16	9	0	2	rs142004576		TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739326	T	T	62739326	3	4	20	1	0	0	0	0	1	0	0	0	8049	893	31	4	1569	4	KANK4	1	62739326	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	29372524	62739326	186511295	3	36883											
NBPF10	100132406	broad.mit.edu	37	chr1	145300203	145300203	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaggcacagaatgacctGttttctccaagaggctcaat	8	11	2	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145300203	A	A	145300203	1	1	20	0	1	0	0	0	0	0	0	0	10287	1392	48	4		4	NBPF10	1	145300203	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	82560877	145300203	103950418	4	36884											
NBPF10	100132406	broad.mit.edu	37	chr1	145311258	145311258	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgattttgtcttgtcagAcaagtctgaattatgcctac	7	7	3	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145311258	G	G	145311258	1	3	20	0	1	0	0	0	0	0	0	0	10287	290	10	5		5	NBPF10	1	145311258	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	11055	145311258	103939363	5	36885											
NBPF10	100132406	broad.mit.edu	37	chr1	145579572	145579573	+	Intron	INS	-	T	T													taagaaagacttcttttttgINSttttttttttttgagacaga					rs66680279		TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145579573	T	T	145579572	6	5	20	0	1	1	1	0	0	0	0	0	10287	1392	48	0		0	NBPF10	1	145579572	Intron	INS	-	TCGA-05-4422-01A-01D-1265-08	268314	145579572	103671049	6	36886											
LOC200030	200030	broad.mit.edu	37	chr1	148253044	148253044	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgtgggtaaaatgtccctAttctagtagatcgttatccc	8	9	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148253044	T	T	148253044	1	4	20	0	1	0	0	0	0	0	0	0	8950	464	16	5		5	LOC200030	1	148253044	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	2673472	148253044	100997577	7	36887											
OTUD7B	56957	broad.mit.edu	37	chr1	149937911	149937911	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctaggaggcctacccagAataaaaccatcacttgatta	6	12	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149937911	G	G	149937911	1	3	20	0	1	0	0	0	0	0	0	0	11413	261	9	5		5	OTUD7B	1	149937911	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	1684867	149937911	99312710	8	36888											
TARS2	80222	broad.mit.edu	37	chr1	150469204	150469204	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagattcagtcacacagactGagcagctccgtcagttgttc	9	12	3	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150469204	C	C	150469204	1	2	20	0	1	0	0	0	0	0	0	0	15679	1305	45	4		4	TARS2	1	150469204	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	531293	150469204	98781417	9	36889											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150529665	150529665	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacttgctccggcaccccGcccagcccggaccccaggca	9	23	0	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150529665	A	A	150529665	3	1	20	1	0	0	0	0	1	0	0	0	277	1087	38	4	1939	4	ADAMTSL4	1	150529665	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	60461	150529665	98720956	10	36890											
KIRREL	55243	broad.mit.edu	37	chr1	158057683	158057683	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggctgggagcgctctgggGagtgataaggaagagttcgg	20	5	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158057683	A	A	158057683	1	1	20	0	1	0	0	0	0	0	0	0	8395	1189	41	4		4	KIRREL	1	158057683	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	7528018	158057683	91192938	11	36891											
IFI16	3428	broad.mit.edu	37	chr1	158990342	158990342	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaattaaataggcaaataTtagttttccaaagtggaaat	7	3	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158990342	C	C	158990342	1	2	20	0	1	0	0	0	0	0	0	0	7581	1508	52	5		5	IFI16	1	158990342	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	932659	158990342	90260279	12	36892											
FMO3	2328	broad.mit.edu	37	chr1	171086167	171086167	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcactgatataaagttgCgagccattttctctgttctg	7	9	3	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171086167	T	T	171086167	1	4	20	0	1	0	0	0	0	0	0	0	6014	783	27	4		4	FMO3	1	171086167	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	12095825	171086167	78164454	13	36893											
TNN	63923	broad.mit.edu	37	chr1	175087805	175087805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtatgtggtgcactacaCgtctgccaacggagagacca	12	11	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175087805	A	A	175087805	3	1	20	1	0	0	0	0	1	0	0	0	16446	536	19	3	2533	3	TNN	1	175087805	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	4001638	175087805	74162816	14	36894											
LAMC1	3915	broad.mit.edu	37	chr1	183104244	183104244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaagaagctgcaaagaaggGacgggataccttacaagaag	13	6	0	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183104244	T	T	183104244	3	4	20	1	0	0	0	0	1	0	0	0	8686	1174	41	3	4161	3	LAMC1	1	183104244	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	8016439	183104244	66146377	15	36895											
SOX13	9580	broad.mit.edu	37	chr1	204081960	204081960	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcacttgggtggggtcaGgggagcaaacagtagggtca	19	6	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204081960	A	A	204081960	1	1	20	0	1	0	0	0	0	0	0	0	15058	1015	35	4		4	SOX13	1	204081960	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	20977716	204081960	45168661	16	36896											
NFASC	23114	broad.mit.edu	37	chr1	204985749	204985749	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaccactgcagacctaccacGaagccaccaccaccttcagt	5	18	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204985749	A	A	204985749	1	1	20	0	1	0	0	0	0	0	0	0	10454	1073	37	4		4	NFASC	1	204985749	3'UTR	SNP	G	TCGA-05-4422-01A-01D-1265-08	903789	204985749	44264872	17	36897											
INTS7	25896	broad.mit.edu	37	chr1	212156261	212156261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagtctctaacaataaaCttcaacaaaatttcctacca	2	10	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212156261	A	A	212156261	1	1	20	0	1	0	0	0	0	0	0	0	7853	580	20	3		3	INTS7	1	212156261	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	7170512	212156261	37094360	18	36898											
ACBD3	64746	broad.mit.edu	37	chr1	226342570	226342570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgaagacacactgaccaGgaaggctagcaaataagaca	10	8	0	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226342570	T	T	226342570	1	4	20	0	1	0	0	0	0	0	0	0	123	1015	35	2		2	ACBD3	1	226342570	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	14186309	226342570	22908051	19	36899											
LIN9	286826	broad.mit.edu	37	chr1	226485581	226485581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttcataccatgaatactGtttttttcataacagccata	4	8	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226485581	T	T	226485581	1	4	20	0	1	0	0	0	0	0	0	0	8886	1392	48	3		3	LIN9	1	226485581	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	143011	226485581	22765040	20	36900											
RYR2	6262	broad.mit.edu	37	chr1	237791246	237791246	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtcttgttcgggccctGccaaagacctacacgataaa	12	11	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237791246	T	T	237791246	2	4	20	1	0	0	0	0	0	0	0	1	13880	1306	46	3		3	RYR2	1	237791246	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08	11305665	237791246	11459375	21	36901											
PLB1	151056	broad.mit.edu	37	chr2	28847856	28847856	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacctctcttcctaggccAaaatcccatgtcgtgagtcc	6	15	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28847856	C	C	28847856	1	2	20	0	1	0	0	0	0	0	0	0	12119	145	5	5		5	PLB1	2	28847856	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08		28847856	214351517	22	36902											
NRXN1	9378	broad.mit.edu	37	chr2	50282123	50282123	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagccattcatcaactactcGaccaagtcgatatggaattc	6	11	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50282123	A	A	50282123	1	1	20	0	1	0	0	0	0	0	0	0	10760	1066	37	4		4	NRXN1	2	50282123	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	21434267	50282123	192917250	23	36903											
ADD2	119	broad.mit.edu	37	chr2	70905951	70905951	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccttctgctgcttctggGcatgctgtcgcagggcgggc	14	13	3	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70905951	A	A	70905951	3	1	20	1	0	0	0	0	1	0	0	0	305	1203	42	4	1113	4	ADD2	2	70905951	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	20623828	70905951	172293422	24	36904											
NCKAP5	344148	broad.mit.edu	37	chr2	133543374	133543374	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtacatcatgggacttAatttgtgctagtggttggta	11	4	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133543374	T	T	133543374	1	4	20	0	1	0	0	0	0	0	0	0	10318	377	13	5		5	NCKAP5	2	133543374	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	62637423	133543374	109655999	25	36905											
STK39	27347	broad.mit.edu	37	chr2	168920201	168920201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcaaaactagatctttaCacacgcaggccttctttggc	6	11	3	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168920201	A	A	168920201	1	1	20	0	1	0	0	0	0	0	0	0	15423	493	17	3		3	STK39	2	168920201	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	35376827	168920201	74279172	26	36906											
TLK1	9874	broad.mit.edu	37	chr2	171910263	171910263	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttcccctctatgactcaTtacttaccctgagcaaatca	3	13	3	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171910263	C	C	171910263	1	2	20	0	1	0	0	0	0	0	0	0	16066	1508	52	5		5	TLK1	2	171910263	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	2990062	171910263	71289110	27	36907											
NFE2L2	4780	broad.mit.edu	37	chr2	178098919	178098942	+	In_Frame_Del	DEL	TCGCTGACTGAAGTCAAATACTTC	-	-													tccagctcatactctttccgTcgctgactgaagtcaaatac							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	178098942	-	-	178098919	7	5	20	1	0	1	0	1	0	0	0	0	10463	1654	58	0	1707	0	NFE2L2	2	178098919	In_Frame_Del	DEL	TCGCTGACTGAAGTCAAATACTTC	TCGA-05-4422-01A-01D-1265-08	6188656	178098919	65100454	28	36908											
CCDC141	285025	broad.mit.edu	37	chr2	179737051	179737051	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttttgcctgttaaattaAtaattcatataatagctttt	3	6	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179737051	G	G	179737051	1	3	20	0	1	0	0	0	0	0	0	0	2801	116	4	5		5	CCDC141	2	179737051	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	1638132	179737051	63462322	29	36909											
CLK1	1195	broad.mit.edu	37	chr2	201718235	201718235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgactacactatgtaaCagtatagtaaaccatatata	4	8	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201718235	A	A	201718235	1	1	20	0	1	0	0	0	0	0	0	0	3568	493	17	3		3	CLK1	2	201718235	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	21981184	201718235	41481138	30	36910											
MAP2	4133	broad.mit.edu	37	chr2	210570426	210570426	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctctctcaacagttctatCtcttcttcagcacggcggac	6	14	6	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210570426	A	A	210570426	2	1	20	1	0	0	0	0	0	0	0	1	9327	903	32	3		3	MAP2	2	210570426	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	8852191	210570426	32628947	31	36911											
XRCC5	7520	broad.mit.edu	37	chr2	217057283	217057283	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaggtgattcagaccaaActttgtttggtctggggtga	12	5	2	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217057283	G	G	217057283	1	3	20	0	1	0	0	0	0	0	0	0	17583	58	2	5		5	XRCC5	2	217057283	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	6486857	217057283	26142090	32	36912											
AAMP	14	broad.mit.edu	37	chr2	219132260	219132260	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatcgctgagccgccatacGaaggctttgtcatcttcacc	8	15	3	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219132260	A	A	219132260	2	1	20	1	0	0	0	0	0	0	0	1	17	1049	37	4		4	AAMP	2	219132260	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08	2074977	219132260	24067113	33	36913											
TRIM71	131405	broad.mit.edu	37	chr3	32932170	32932170	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactcaccaaggccacaggcGatggcctcaagcgtgccctc	10	17	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32932170	A	A	32932170	3	1	20	1	0	0	0	0	1	0	0	0	16669	1058	37	4	1488	4	TRIM71	3	32932170	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08		32932170	165090260	34	36914											
CTNNB1	1499	broad.mit.edu	37	chr3	41266113	41266113	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggactctggaatccattCtggtgccactaccacagctc	8	15	2	0	rs121913403		TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41266113	T	T	41266113	3	4	20	1	0	0	0	0	1	0	0	0	4050	913	32	4	116	4	CTNNB1	3	41266113	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	8333943	41266113	156756317	35	36915											
SEMA3F	6405	broad.mit.edu	37	chr3	50211518	50211518	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctccccacagcgcatcgagGaatgcgtgctctcaggcaag	11	15	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50211518	T	T	50211518	4	4	20	1	0	0	0	0	0	1	0	0	14142	1175	41	3	317	3	SEMA3F	3	50211518	Nonsense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	8945405	50211518	147810912	36	36916											
ATXN7	6314	broad.mit.edu	37	chr3	63973944	63973944	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcacggagtgattccttcCgaatcaaagccttttgtagc	8	12	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63973944	A	A	63973944	2	1	20	1	0	0	0	0	0	0	0	1	1219	639	23	1		1	ATXN7	3	63973944	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	13762426	63973944	134048486	37	36917											
SUCLG2	8801	broad.mit.edu	37	chr3	67546470	67546470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagaactctgtcattgcCaggccaatttatatcctgtt	8	9	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67546470	A	A	67546470	1	1	20	0	1	0	0	0	0	0	0	0	15483	609	21	2		2	SUCLG2	3	67546470	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	3572526	67546470	130475960	38	36918											
FOXP1	27086	broad.mit.edu	37	chr3	71037259	71037259	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaatgctttgttatttctCtgaataaagatgcatggctc	8	6	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71037259	T	T	71037259	1	4	20	0	1	0	0	0	0	0	0	0	6086	928	32	4		4	FOXP1	3	71037259	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	3490789	71037259	126985171	39	36919											
NFKBIZ	64332	broad.mit.edu	37	chr3	101571897	101571897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgggataattttagaaGgaagtgagtgtgcaagttgc	13	4	0	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101571897	T	T	101571897	1	4	20	0	1	0	0	0	0	0	0	0	10478	1015	35	2		2	NFKBIZ	3	101571897	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	30534638	101571897	96450533	40	36920											
KIAA1524	57650	broad.mit.edu	37	chr3	108298119	108298119	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctaaaattgactgaagtGagtcatacctggtgagataa	10	5	2	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108298119	T	T	108298119	1	4	20	0	1	0	0	0	0	0	0	0	8309	1305	45	3		3	KIAA1524	3	108298119	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	6726222	108298119	89724311	41	36921											
HTR3C	170572	broad.mit.edu	37	chr3	183773963	183773963	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccctcactgccctgatgcAggtatgggacaatcctttca	9	13	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183773963	T	T	183773963	5	4	20	1	0	0	0	0	0	0	1	0	7516	202	7	5	292	5	HTR3C	3	183773963	Splice_Site	SNP	A	TCGA-05-4422-01A-01D-1265-08	75475844	183773963	14248467	42	36922											
ACOX3	8310	broad.mit.edu	37	chr4	8401197	8401197	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtggaggggtctcctttcCaggtgcagggaggagcacag	17	9	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8401197	T	T	8401197	1	4	20	0	1	0	0	0	0	0	0	0	160	609	21	4		4	ACOX3	4	8401197	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08		8401197	182753079	43	36923											
DHX15	1665	broad.mit.edu	37	chr4	24534645	24534649	+	Frame_Shift_Del	DEL	AGTTG	-	-													cagggacctgtagttaatgaAgttgtcataacaccactgaa							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24534649	-	-	24534645	7	5	20	1	0	1	0	1	0	0	0	0	4541	72	3	0	457	0	DHX15	4	24534645	Frame_Shift_Del	DEL	AGTTG	TCGA-05-4422-01A-01D-1265-08	16133448	24534645	166619631	44	36924											
ATP8A1	10396	broad.mit.edu	37	chr4	42580200	42580200	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagatataattaaaacctTttttctcctgagatatcaaa	5	6	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42580200	G	G	42580200	1	3	20	0	1	0	0	0	0	0	0	0	1196	1856	64	5		5	ATP8A1	4	42580200	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	18045555	42580200	148574076	45	36925											
UBA6	55236	broad.mit.edu	37	chr4	68490652	68490652	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactgggttggtatgacggGgaagtcagggaagaggcaat	18	4	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68490652	A	A	68490652	1	1	20	0	1	0	0	0	0	0	0	0	16958	1247	43	4		4	UBA6	4	68490652	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	25910452	68490652	122663624	46	36926											
PPP3CA	5530	broad.mit.edu	37	chr4	101947129	101947129	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagagggcatggcatctcTgcgaggcggcatcctctcat	13	12	3	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101947129	C	C	101947129	3	2	20	1	0	0	0	0	1	0	0	0	12498	1588	55	5	110	5	PPP3CA	4	101947129	Missense_Mutation	SNP	T	TCGA-05-4422-01A-01D-1265-08	33456477	101947129	89207147	47	36927											
TLR3	7098	broad.mit.edu	37	chr4	187003653	187003653	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacaactttcttgggactAaagtggacaaatctcactat	6	8	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187003653	G	G	187003653	2	3	20	1	0	0	0	0	0	0	0	1	16075	349	13	5		5	TLR3	4	187003653	Silent	SNP	A	TCGA-05-4422-01A-01D-1265-08	85056524	187003653	4150623	48	36928											
CEP72	55722	broad.mit.edu	37	chr5	635748	635748	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctgtaacagaaaaccAcagactgagtaatttataaa	7	6	0	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	635748	G	G	635748	1	3	20	0	1	0	0	0	0	0	0	0	3290	174	6	5		5	CEP72	5	635748	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08		635748	180279512	49	36929											
BRD9	65980	broad.mit.edu	37	chr5	887360	887361	+	Intron	INS	-	A	A													agagcaaagggggcaacaccINSatgagggtggcgggtggatg							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	887361	A	A	887360	6	5	20	0	1	1	1	0	0	0	0	0	1516	609	21	0		0	BRD9	5	887360	Intron	INS	-	TCGA-05-4422-01A-01D-1265-08	251612	887360	180027900	50	36930											
TRIP13	9319	broad.mit.edu	37	chr5	907199	907199	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatggctgccgctgaggatcCacaggaccagttagtaattc	11	10	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	907199	T	T	907199	1	4	20	0	1	0	0	0	0	0	0	0	16682	609	21	4		4	TRIP13	5	907199	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	19839	907199	180008061	51	36931											
MOCS2	4338	broad.mit.edu	37	chr5	52396408	52396409	+	Intron	DNP	AT	TA	TA													aaaatcaccatcatctctgaAtctacgtgttaaagaatctg							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	52396409	TA	TA	52396408	1	4	20	0	1	0	0	0	0	0	0	0	9785	116	4	5		5	MOCS2	5	52396408	Intron	DNP	AT	TCGA-05-4422-01A-01D-1265-08	51489209	52396408	128518852	52	36932											
PDGFRB	5159	broad.mit.edu	37	chr5	149511607	149511607	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggcccgcatggtgtagTggccagcctctgccaccttc	13	14	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149511607	G	G	149511607	3	3	20	1	0	0	0	0	1	0	0	0	11756	1696	59	5	2206	5	PDGFRB	5	149511607	Missense_Mutation	SNP	T	TCGA-05-4422-01A-01D-1265-08	97115199	149511607	31403653	53	36933											
KIF4B	285643	broad.mit.edu	37	chr5	154396899	154396899	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgagcttctttaaccctgtCtgtgccacccccaatagcaa	6	14	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154396899	G	G	154396899	2	3	20	1	0	0	0	0	0	0	0	1	8374	900	32	4		4	KIF4B	5	154396899	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	4885292	154396899	26518361	54	36934											
TRIM41	90933	broad.mit.edu	37	chr5	180662120	180662120	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaatttcattccttaacttCcttttccccacccctgctct	2	16	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180662120	T	T	180662120	1	4	20	0	1	0	0	0	0	0	0	0	16640	870	30	4		4	TRIM41	5	180662120	3'UTR	SNP	C	TCGA-05-4422-01A-01D-1265-08	26265221	180662120	253140	55	36935											
SLC17A4	10050	broad.mit.edu	37	chr6	25771135	25771135	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtcctctcacccagaacatCctcgcctcttctgttcaggg	7	16	4	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25771135	G	G	25771135	1	3	20	0	1	0	0	0	0	0	0	0	14532	870	30	4		4	SLC17A4	6	25771135	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08		25771135	145343932	56	36936											
C6orf27	80737	broad.mit.edu	37	chr6	31734594	31734594	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagattcggagacacagggaGaaaagaattaatggccttca	12	6	1	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31734594	A	A	31734594	1	1	20	0	1	0	0	0	0	0	0	0	2385	957	33	4		4	C6orf27	6	31734594	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	5963459	31734594	139380473	57	36937											
PKHD1	5314	broad.mit.edu	37	chr6	51882392	51882392	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcagcctcacagctgtcctCctcacgcttcaggccacaca	8	18	3	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51882392	A	A	51882392	4	1	20	1	0	0	0	0	0	1	0	0	12066	864	30	3	6983	3	PKHD1	6	51882392	Nonsense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	20147798	51882392	119232675	58	36938											
C6orf142	90523	broad.mit.edu	37	chr6	54054594	54054594	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atataataataaacaaacttCaaaatacttaaacacataca	0	7	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54054594	T	T	54054594	1	4	20	0	1	0	0	0	0	0	0	0	2356	841	29	4		4	C6orf142	6	54054594	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	2172202	54054594	117060473	59	36939											
USP45	85015	broad.mit.edu	37	chr6	99883804	99883804	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaacaataacatattcaTtacaaactctatctaatgcc	1	10	3	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99883804	C	C	99883804	1	2	20	0	1	0	0	0	0	0	0	0	17203	1508	52	5		5	USP45	6	99883804	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	45829210	99883804	71231263	60	36940											
USP45	85015	broad.mit.edu	37	chr6	99930833	99930833	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaaaaatctgtgagttacActctgcttaaataacaccaa	4	8	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99930833	C	C	99930833	1	2	20	0	1	0	0	0	0	0	0	0	17203	174	6	5		5	USP45	6	99930833	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	47029	99930833	71184234	61	36941											
LACE1	246269	broad.mit.edu	37	chr6	108798504	108798504	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgtgtgagagagtaagtatCcaggcacgtccagactcact	11	10	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108798504	G	G	108798504	1	3	20	0	1	0	0	0	0	0	0	0	8667	870	30	4		4	LACE1	6	108798504	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	8867671	108798504	62316563	62	36942											
RFPL4B	442247	broad.mit.edu	37	chr6	112671585	112671585	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttttttgatgttgacaaTaatgtcctcatctatacaca	5	8	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112671585	A	A	112671585	3	1	20	1	0	0	0	0	1	0	0	0	13364	1403	49	5	677	5	RFPL4B	6	112671585	Missense_Mutation	SNP	T	TCGA-05-4422-01A-01D-1265-08	3873081	112671585	58443482	63	36943											
TULP4	56995	broad.mit.edu	37	chr6	158915972	158915972	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaaactaggagatgaactTttaagacagcaaaagattag	8	5	0	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158915972	G	G	158915972	1	3	20	0	1	0	0	0	0	0	0	0	16902	1856	64	5		5	TULP4	6	158915972	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	46244387	158915972	12199095	64	36944											
CHN2	1124	broad.mit.edu	37	chr7	29252793	29252793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaccatggatttattcCtaaactactccacgaacacg	4	13	0	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29252793	T	T	29252793	1	4	20	0	1	0	0	0	0	0	0	0	3394	696	24	4		4	CHN2	7	29252793	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08		29252793	129885870	65	36945											
MAGI2	9863	broad.mit.edu	37	chr7	77975214	77975214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaattttccctttgaaaCatcacatgctgacaggtatc	6	10	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77975214	A	A	77975214	1	1	20	0	1	0	0	0	0	0	0	0	9283	493	17	3		3	MAGI2	7	77975214	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	48722421	77975214	81163449	66	36946											
HGF	3082	broad.mit.edu	37	chr7	81332027	81332027	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacaatgacaccaagaaccAttctcattttatgttgctca	5	10	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81332027	G	G	81332027	3	3	20	1	0	0	0	0	1	0	0	0	7152	217	8	5	133	5	HGF	7	81332027	Missense_Mutation	SNP	A	TCGA-05-4422-01A-01D-1265-08	3356813	81332027	77806636	67	36947											
GRM3	2913	broad.mit.edu	37	chr7	86394780	86394780	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caagggatacctatgcattgGagcaatcactggagtttgtc	11	8	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86394780	C	C	86394780	3	2	20	1	0	0	0	0	1	0	0	0	6864	1175	41	4	321	4	GRM3	7	86394780	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	5062753	86394780	72743883	68	36948											
TRRAP	8295	broad.mit.edu	37	chr7	98508636	98508636	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagctgatctggttacatAatggaacatattcagagagg	11	6	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98508636	G	G	98508636	1	3	20	0	1	0	0	0	0	0	0	0	16726	377	13	5		5	TRRAP	7	98508636	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	12113856	98508636	60630027	69	36949											
TAF6	6878	broad.mit.edu	37	chr7	99711918	99711918	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggaacggggcaggcagaaGaaaaagaaacgtgagacaca	15	6	0	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99711918	C	C	99711918	1	2	20	0	1	0	0	0	0	0	0	0	15649	957	33	4		4	TAF6	7	99711918	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	1203282	99711918	59426745	70	36950											
AASS	10157	broad.mit.edu	37	chr7	121717989	121717989	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccataagccacaagatcaatCgttttatgttctaaatgtcc	5	10	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121717989	T	T	121717989	2	4	20	1	0	0	0	0	0	0	0	1	24	871	31	4		4	AASS	7	121717989	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	22006071	121717989	37420674	71	36951											
VIPR2	7434	broad.mit.edu	37	chr7	158827188	158827188	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcgtggaatggggtcagttCtatttaataaaggatggcag	14	4	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158827188	T	T	158827188	1	4	20	0	1	0	0	0	0	0	0	0	17297	928	32	4		4	VIPR2	7	158827188	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	37109199	158827188	311475	72	36952											
XPO7	23039	broad.mit.edu	37	chr8	21826967	21826967	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttactcaatacaattttAagtcctttttccctctcttt	3	11	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21826967	G	G	21826967	1	3	20	0	1	0	0	0	0	0	0	0	17576	377	13	5		5	XPO7	8	21826967	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08		21826967	124537055	73	36953											
CA8	767	broad.mit.edu	37	chr8	61178489	61178489	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgttattcttacctccaTgggaaaagctttgaaattaa	6	6	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61178489	C	C	61178489	3	2	20	1	0	0	0	0	1	0	0	0	2549	1464	51	5	484	5	CA8	8	61178489	Missense_Mutation	SNP	T	TCGA-05-4422-01A-01D-1265-08	39351522	61178489	85185533	74	36954											
RUNX1T1	862	broad.mit.edu	37	chr8	93026725	93026725	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattataacaaaatacttgcGagaacggtgtctacatgtct	7	7	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93026725	T	T	93026725	1	4	20	0	1	0	0	0	0	0	0	0	13858	1073	37	3		3	RUNX1T1	8	93026725	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	31848236	93026725	53337297	75	36955											
KIAA1429	25962	broad.mit.edu	37	chr8	95502088	95502089	+	Intron	DNP	TC	AA	AA													gattagcacccctagcccccTctgtatatgatatcaacaat							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	95502089	AA	AA	95502088	1	1	20	0	1	0	0	0	0	0	0	0	8301	1566	54	5		5	KIAA1429	8	95502088	Intron	DNP	TC	TCGA-05-4422-01A-01D-1265-08	2475363	95502088	50861934	76	36956											
RRM2B	50484	broad.mit.edu	37	chr8	103244324	103244324	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcaatatcctgtaaaacaaGaaggaacactgcactatagg	7	8	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103244324	C	C	103244324	1	2	20	0	1	0	0	0	0	0	0	0	13794	957	33	4		4	RRM2B	8	103244324	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	7742236	103244324	43119698	77	36957											
UBR5	51366	broad.mit.edu	37	chr8	103358988	103358988	+	Intron	DEL	A	-	-													gtgagactccctctcaaaggAaaaaaaaaaagttttctagg							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103358988	-	-	103358988	6	5	20	0	1	1	0	1	0	0	0	0	17031	261	9	0		0	UBR5	8	103358988	Intron	DEL	A	TCGA-05-4422-01A-01D-1265-08	114664	103358988	43005034	78	36958											
WDR67	93594	broad.mit.edu	37	chr8	124089201	124089201	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacctgtttttctgaaatcCtggtaagattgattctagag	9	6	2	5			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124089201	T	T	124089201	1	4	20	0	1	0	0	0	0	0	0	0	17445	696	24	4		4	WDR67	8	124089201	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	20730213	124089201	22274821	79	36959			1	32		5	4	371	N	C	1.31269e-09
WDR67	93594	broad.mit.edu	37	chr8	124089302	124089302	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccatatttttcataatatCaagtaatacgtgacatagat	5	6	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124089302	T	T	124089302	1	4	20	0	1	0	0	0	0	0	0	0	17445	841	29	4		4	WDR67	8	124089302	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	101	124089302	22274720	80	36960			1	32		5	4	371	N	C	1.31269e-09
WDR67	93594	broad.mit.edu	37	chr8	124089342	124089342	+	Intron	DEL	C	-	-													ttcaatgtttgggtttttttCtttgacagaattatagtgaa							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124089342	-	-	124089342	6	5	20	0	1	1	0	1	0	0	0	0	17445	928	32	0		0	WDR67	8	124089342	Intron	DEL	C	TCGA-05-4422-01A-01D-1265-08	40	124089342	22274680	81	36961			1	32		5	4	371	N	C	1.31269e-09
WDR67	93594	broad.mit.edu	37	chr8	124089563	124089563	+	Intron	SNP	C	T	T													ttcactgactgttttcgtacCtgctattcattattcattca							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124089563	T	T	124089563	1	4	20	0	1	0	0	0	0	0	0	0	17445	696	24	4		4	WDR67	8	124089563	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	221	124089563	22274459	82	36962	207	2	1	32		5	4	371	N	C	1.31269e-09
WDR67	93594	broad.mit.edu	37	chr8	124089571	124089571	+	Intron	SNP	C	T	T													ctgttttcgtacctgctattCattattcattcagaaagatt							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124089571	T	T	124089571	1	4	20	0	1	0	0	0	0	0	0	0	17445	841	29	4		4	WDR67	8	124089571	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	8	124089571	22274451	83	36963	207	2	1	32		5	4	371	N	C	1.31269e-09
TRMT12	55039	broad.mit.edu	37	chr8	125463774	125463774	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggctgggtagagcatgtGgataatggtatccgttataa	13	5	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125463774	T	T	125463774	2	4	20	1	0	0	0	0	0	0	0	1	16689	1335	47	2		2	TRMT12	8	125463774	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08	1374203	125463774	20900248	84	36964			2	33	1374203	3	3	717	G		7.430116e-06
TRMT12	55039	broad.mit.edu	37	chr8	125464156	125464156	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgttaaggcaggatgctGgaggcattttgcatatccac	12	7	0	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125464156	T	T	125464156	4	4	20	1	0	0	0	0	0	1	0	0	16689	1349	47	2	990	2	TRMT12	8	125464156	Nonsense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	382	125464156	20899866	85	36965			2	33	1374203	3	3	717	G		7.430116e-06
TRMT12	55039	broad.mit.edu	37	chr8	125464490	125464490	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catagtcctggatctggaatGctgcccctgtccttcagttg	10	12	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125464490	C	C	125464490	3	2	20	1	0	0	0	0	1	0	0	0	16689	1319	46	4	1324	4	TRMT12	8	125464490	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	334	125464490	20899532	86	36966			2	33	1374203	3	3	717	G		7.430116e-06
OC90	729330	broad.mit.edu	37	chr8	133051064	133051064	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaagtgttgtcaagtcttCcttgatggttgtctctgaaa	10	7	3	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133051064	T	T	133051064	3	4	20	1	0	0	0	0	1	0	0	0	10909	864	30	4	860	4	OC90	8	133051064	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	7586574	133051064	13312958	87	36967			3	34	7586574	6	6	343	C		1.727191e-16
OC90	729330	broad.mit.edu	37	chr8	133051198	133051198	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatcccaaaccagctgctgtCcagatcctcagccccacggc	8	18	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133051198	T	T	133051198	1	4	20	0	1	0	0	0	0	0	0	0	10909	870	30	4		4	OC90	8	133051198	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	134	133051198	13312824	88	36968			3	34	7586574	6	6	343	C		1.727191e-16
OC90	729330	broad.mit.edu	37	chr8	133051224	133051224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagccccacggctgatgCagccaggttcttcctacctg	9	17	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133051224	T	T	133051224	1	4	20	0	1	0	0	0	0	0	0	0	10909	725	25	4		4	OC90	8	133051224	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	26	133051224	13312798	89	36969			3	34	7586574	6	6	343	C		1.727191e-16
OC90	729330	broad.mit.edu	37	chr8	133051249	133051249	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggttcttcctacctggagtCtgagccaggcagaaggaggt	14	9	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133051249	T	T	133051249	2	4	20	1	0	0	0	0	0	0	0	1	10909	912	32	4		4	OC90	8	133051249	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	25	133051249	13312773	90	36970			3	34	7586574	6	6	343	C		1.727191e-16
OC90	729330	broad.mit.edu	37	chr8	133051317	133051317	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggatcgagccaagcactCtatggcagccttatcacagg	11	12	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133051317	T	T	133051317	3	4	20	1	0	0	0	0	1	0	0	0	10909	922	32	4	954	4	OC90	8	133051317	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	68	133051317	13312705	91	36971			3	34	7586574	6	6	343	C		1.727191e-16
OC90	729330	broad.mit.edu	37	chr8	133051406	133051406	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatagccaattggaaagatCtcagctggaatcccaagagg	11	9	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133051406	A	A	133051406	1	1	20	0	1	0	0	0	0	0	0	0	10909	928	32	3		3	OC90	8	133051406	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	89	133051406	13312616	92	36972			3	34	7586574	6	6	343	C		1.727191e-16
FLJ43860	389690	broad.mit.edu	37	chr8	142487879	142487879	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagggcctggaacacaccatCagacactggaggagctcaga	12	12	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142487879	T	T	142487879	2	4	20	1	0	0	0	0	0	0	0	1	5987	813	29	4		4	FLJ43860	8	142487879	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	9436473	142487879	3876143	93	36973											
FAM108B1	51104	broad.mit.edu	37	chr9	74481838	74481838	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggcaacgttcaaacaatgcGaggccatgtgaaaagtcaat	10	8	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74481838	C	C	74481838	2	2	20	1	0	0	0	0	0	0	0	1	5438	1045	37	4		4	FAM108B1	9	74481838	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08		74481838	66731593	94	36974											
RASEF	158158	broad.mit.edu	37	chr9	85607700	85607700	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgttaaggacagatgcctCagacgggggaggtttgtcaa	15	6	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85607700	T	T	85607700	1	4	20	0	1	0	0	0	0	0	0	0	13176	841	29	4		4	RASEF	9	85607700	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	11125862	85607700	55605731	95	36975											
C9orf3	84909	broad.mit.edu	37	chr9	97522333	97522333	+	Frame_Shift_Del	DEL	T	-	-													ccgtgacaaatgcaaggaccTtctcatctgaaatggaatat							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97522333	-	-	97522333	7	5	20	1	0	1	0	1	0	0	0	0	2503	1609	56	0	270	0	C9orf3	9	97522333	Frame_Shift_Del	DEL	T	TCGA-05-4422-01A-01D-1265-08	11914633	97522333	43691098	96	36976											
IDI1	3422	broad.mit.edu	37	chr10	1089975	1089975	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcaggtgacaattcttctTggtctcagctccaattttat	7	9	4	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1089975	A	A	1089975	4	1	20	1	0	0	0	0	0	1	0	0	7569	1821	63	5	593	5	IDI1	10	1089975	Nonsense_Mutation	SNP	T	TCGA-05-4422-01A-01D-1265-08		1089975	134444772	97	36977											
WDR37	22884	broad.mit.edu	37	chr10	1118261	1118261	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgattgattagggccttatTgattgattgatttttgagac	10	4	0	5			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1118261	G	G	1118261	1	3	20	0	1	0	0	0	0	0	0	0	17418	1827	63	5		5	WDR37	10	1118261	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	28286	1118261	134416486	98	36978											
ACBD7	414149	broad.mit.edu	37	chr10	15120591	15120591	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataggcactcgtcgcatcttCcgtcgacaaccctagaaaga	8	13	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15120591	A	A	15120591	4	1	20	1	0	0	0	0	0	1	0	0	127	864	30	3	65	3	ACBD7	10	15120591	Nonsense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	14002330	15120591	120414156	99	36979											
ANXA8L2	244	broad.mit.edu	37	chr10	47756109	47756109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtgaggctgcgcccagCcggccatgtggccccacccc	13	18	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47756109	A	A	47756109	1	1	20	0	1	0	0	0	0	0	0	0	726	754	26	3		3	ANXA8L2	10	47756109	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	32635518	47756109	87778638	100	36980											
TET1	80312	broad.mit.edu	37	chr10	70450634	70450634	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccattttatcttaaaaagttCagacaacactaaaacttatt	2	8	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70450634	G	G	70450634	4	3	20	1	0	0	0	0	0	1	0	0	15891	838	29	4	5516	4	TET1	10	70450634	Nonsense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	22694525	70450634	65084113	101	36981											
CHST3	9469	broad.mit.edu	37	chr10	73765650	73765650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgggactttgtgcacaGcctgaagatgagaagcaaat	12	9	0	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73765650	T	T	73765650	3	4	20	1	0	0	0	0	1	0	0	0	3436	971	34	3	52	3	CHST3	10	73765650	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	3315016	73765650	61769097	102	36982											
DLG5	9231	broad.mit.edu	37	chr10	79579760	79579760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagttctccactggccGggacacacttctgttcctgc	12	13	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79579760	T	T	79579760	3	4	20	1	0	0	0	0	1	0	0	0	4598	1116	39	1	2408	1	DLG5	10	79579760	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	5814110	79579760	55954987	103	36983											
MYOF	26509	broad.mit.edu	37	chr10	95113621	95113621	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctggcttgatagacatagCagcgcagatggtagatgtag	13	6	1	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95113621	G	G	95113621	3	3	20	1	0	0	0	0	1	0	0	0	10183	710	25	4	2849	4	MYOF	10	95113621	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	15533861	95113621	40421126	104	36984											
CYP2C8	1558	broad.mit.edu	37	chr10	96826847	96826847	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaatctccctccaccacctGagggctgacaaccaggatgc	8	16	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96826847	A	A	96826847	1	1	20	0	1	0	0	0	0	0	0	0	4200	1305	45	4		4	CYP2C8	10	96826847	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	1713226	96826847	38707900	105	36985											
PGAM1	5223	broad.mit.edu	37	chr10	99190257	99190257	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggtgaggacttggcgcctCaatgagcggcactatggggg	18	8	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99190257	A	A	99190257	2	1	20	1	0	0	0	0	0	0	0	1	11868	813	29	3		3	PGAM1	10	99190257	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	2363410	99190257	36344490	106	36986											
PAX2	5076	broad.mit.edu	37	chr10	102546641	102546642	+	Intron	INS	-	T	T													ttgggatcctgcccccaatcINSttctgcctgcctgtctttcg							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102546642	T	T	102546641	6	5	20	0	1	1	1	0	0	0	0	0	11573	928	32	0		0	PAX2	10	102546641	Intron	INS	-	TCGA-05-4422-01A-01D-1265-08	3356384	102546641	32988106	107	36987											
NT5C2	22978	broad.mit.edu	37	chr10	104865643	104865644	+	Intron	INS	-	C	C													atttaatcatcatgaaccaaINScctcatttaattcaagcttt							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104865644	C	C	104865643	6	5	20	0	1	1	1	0	0	0	0	0	10782	58	2	0		0	NT5C2	10	104865643	Intron	INS	-	TCGA-05-4422-01A-01D-1265-08	2319002	104865643	30669104	108	36988											
SAAL1	113174	broad.mit.edu	37	chr11	18108506	18108506	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagcactgttttctgttcttGaagaatgatgggtggatcat	11	5	3	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18108506	A	A	18108506	4	1	20	1	0	0	0	0	0	1	0	0	13912	1299	45	4	491	4	SAAL1	11	18108506	Nonsense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08		18108506	116898010	109	36989											
SLC22A25	387601	broad.mit.edu	37	chr11	62997041	62997041	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgatggtatactatgacGttgaacattataaggaaaac	9	4	0	3	rs150920552	byFrequency;by1000genomes	TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62997041	A	A	62997041	2	1	20	1	0	0	0	0	0	0	0	1	14568	1136	40	4		4	SLC22A25	11	62997041	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08	44888535	62997041	72009475	110	36990											
SF1	7536	broad.mit.edu	37	chr11	64535055	64535055	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacttacccattggaggagGgccatggtgcccaggagggt	15	9	0	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64535055	A	A	64535055	3	1	20	1	0	0	0	0	1	0	0	0	14258	1232	43	4	743	4	SF1	11	64535055	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	1538014	64535055	70471461	111	36991											
ME3	10873	broad.mit.edu	37	chr11	86209277	86209277	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggatgcccactgactttgCcggtgtgaaagagcttgtct	12	10	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86209277	T	T	86209277	1	4	20	0	1	0	0	0	0	0	0	0	9512	754	26	4		4	ME3	11	86209277	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	21674222	86209277	48797239	112	36992											
FAT3	120114	broad.mit.edu	37	chr11	92526038	92526038	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaccaacccactgtatgaaGcgtctgtgtttgaatctgct	8	10	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92526038	A	A	92526038	3	1	20	1	0	0	0	0	1	0	0	0	5748	971	34	4	4747	4	FAT3	11	92526038	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	6316761	92526038	42480478	113	36993											
TRPC6	7225	broad.mit.edu	37	chr11	101362144	101362144	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactgcactccagactgggcGacagagcgagactccatctc	10	15	1	3	rs11224786		TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101362144	A	A	101362144	1	1	20	0	1	0	0	0	0	0	0	0	16708	1073	37	4		4	TRPC6	11	101362144	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	8836106	101362144	33644372	114	36994											
SIK3	23387	broad.mit.edu	37	chr11	116906563	116906563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtaagccttgcttttcCtcctgtaggctggcagagga	11	10	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116906563	A	A	116906563	1	1	20	0	1	0	0	0	0	0	0	0	14432	696	24	2		2	SIK3	11	116906563	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	15544419	116906563	18099953	115	36995											
SLC37A4	2542	broad.mit.edu	37	chr11	118898335	118898335	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtcggtctgggtgggggctCacccttcttgccctcagagg	16	12	4	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118898335	T	T	118898335	1	4	20	0	1	0	0	0	0	0	0	0	14714	841	29	4		4	SLC37A4	11	118898335	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	1991772	118898335	16108181	116	36996											
DCPS	28960	broad.mit.edu	37	chr11	126201273	126201273	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgggcattgcttccctGtcacgggctgtgctgtatca	13	10	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126201273	A	A	126201273	1	1	20	0	1	0	0	0	0	0	0	0	4334	1392	48	4		4	DCPS	11	126201273	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	7302938	126201273	8805243	117	36997											
NACA	4666	broad.mit.edu	37	chr12	57112003	57112003	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggagttgcagctgggggcAtgggggcccctttgggggat	21	7	0	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57112003	G	G	57112003	1	3	20	0	1	0	0	0	0	0	0	0	10227	217	8	5		5	NACA	12	57112003	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08		57112003	76739892	118	36998											
USP15	9958	broad.mit.edu	37	chr12	62785065	62785065	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaaaatggattatgtactGaggatacttgcaaaggtcaa	10	5	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62785065	A	A	62785065	3	1	20	1	0	0	0	0	1	0	0	0	17172	1291	45	4	2060	4	USP15	12	62785065	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	5673062	62785065	71066830	119	36999											
CRY1	1407	broad.mit.edu	37	chr12	107395461	107395461	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcaaaatactttacatgGcaaaattaaaaggggaattt	7	4	0	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107395461	A	A	107395461	1	1	20	0	1	0	0	0	0	0	0	0	3935	1218	42	4		4	CRY1	12	107395461	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	44610396	107395461	26456434	120	37000											
POSTN	10631	broad.mit.edu	37	chr13	38153923	38153923	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcatttttaaggcagacatCtggacaggaaagcttgagaa	12	6	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38153923	G	G	38153923	1	3	20	0	1	0	0	0	0	0	0	0	12354	928	32	4		4	POSTN	13	38153923	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08		38153923	77015955	121	37001											
ADCY4	196883	broad.mit.edu	37	chr14	24798609	24798609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgggctgggcttttacccGtggatcgatgaccagatagg	14	9	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24798609	A	A	24798609	3	1	20	1	0	0	0	0	1	0	0	0	296	1144	40	4	1953	4	ADCY4	14	24798609	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08		24798609	82550931	122	37002											
NOVA1	4857	broad.mit.edu	37	chr14	26941469	26941469	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccattatctttttctccAgtttgcaggcaatcacccgt	5	14	3	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26941469	T	T	26941469	1	4	20	0	1	0	0	0	0	0	0	0	10649	203	7	5		5	NOVA1	14	26941469	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	2142860	26941469	80408071	123	37003											
SPTB	6710	broad.mit.edu	37	chr14	65264536	65264536	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggactggatggtaaaaagtaGaacttccagattccccttct	9	9	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65264536	C	C	65264536	3	2	20	1	0	0	0	0	1	0	0	0	15236	933	33	4	6070	4	SPTB	14	65264536	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	38323067	65264536	42085004	124	37004											
PLD4	122618	broad.mit.edu	37	chr14	105395177	105395177	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcctggctgcagctgCtggacactgcccaggagagc	15	14	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105395177	G	G	105395177	3	3	20	1	0	0	0	0	1	0	0	0	12143	796	28	4	386	4	PLD4	14	105395177	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	40130641	105395177	1954363	125	37005											
CHRNA7	1139	broad.mit.edu	37	chr15	32460235	32460235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgccagcacaagcagcGgcgctgcagcctggccagtg	15	15	0	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32460235	A	A	32460235	3	1	20	1	0	0	0	0	1	0	0	0	3419	1116	39	4	1123	4	CHRNA7	15	32460235	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08		32460235	70071157	126	37006											
LPCAT4	254531	broad.mit.edu	37	chr15	34655545	34655545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggccattcaccttgtcGggagattggaagatgggcca	15	8	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34655545	T	T	34655545	1	4	20	0	1	0	0	0	0	0	0	0	9000	1131	39	1		1	LPCAT4	15	34655545	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	2195310	34655545	67875847	127	37007											
VPS18	57617	broad.mit.edu	37	chr15	41194859	41194859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcagacctgcctgaggagGatgaggaattgcgcaagaag	16	7	0	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41194859	T	T	41194859	3	4	20	1	0	0	0	0	1	0	0	0	17321	1174	41	3	2260	3	VPS18	15	41194859	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	6539314	41194859	61336533	128	37008											
UBR1	197131	broad.mit.edu	37	chr15	43268937	43268937	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtctactgtaagtagtatCtgaagcatgtgtgccatggt	12	6	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43268937	G	G	43268937	3	3	20	1	0	0	0	0	1	0	0	0	17027	912	32	4	938	4	UBR1	15	43268937	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	2074078	43268937	59262455	129	37009											
MYO9A	4649	broad.mit.edu	37	chr15	72146616	72146616	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagaatgcattcttctGgctgctaagtaaaggattga	10	5	2	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72146616	T	T	72146616	1	4	20	0	1	0	0	0	0	0	0	0	10178	1363	47	2		2	MYO9A	15	72146616	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	28877679	72146616	30384776	130	37010											
EFTUD1	79631	broad.mit.edu	37	chr15	82519616	82519616	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaagaaaacctttggggtGagggtgggaggcaaaactgg	16	5	0	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82519616	A	A	82519616	1	1	20	0	1	0	0	0	0	0	0	0	5000	1305	45	4		4	EFTUD1	15	82519616	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	10373000	82519616	20011776	131	37011											
SLCO3A1	28232	broad.mit.edu	37	chr15	92459366	92459366	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgcgggcaccggccgcgcctGatcggctgcggcggcatcgt	17	16	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92459366	A	A	92459366	2	1	20	1	0	0	0	0	0	0	0	1	14842	1277	45	4		4	SLCO3A1	15	92459366	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08	9939750	92459366	10072026	132	37012											
NPRL3	8131	broad.mit.edu	37	chr16	138930	138930	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgaccaagtggaattccagGacacccaggggaacagcgag	14	10	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138930	C	C	138930	1	2	20	0	1	0	0	0	0	0	0	0	10693	1189	41	4		4	NPRL3	16	138930	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08		138930	90215823	133	37013											
SCNN1G	6340	broad.mit.edu	37	chr16	23200956	23200956	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaaggcttcaaatgtcatGcacatcgagtccaagcaagt	8	11	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23200956	C	C	23200956	3	2	20	1	0	0	0	0	1	0	0	0	14043	1319	46	4	588	4	SCNN1G	16	23200956	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	23062026	23200956	67153797	134	37014											
C16orf93	90835	broad.mit.edu	37	chr16	30768826	30768826	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgctcttgcctttacccgGaggtagctggaagggccgct	13	12	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30768826	A	A	30768826	3	1	20	1	0	0	0	0	1	0	0	0	1860	1174	41	4	32	4	C16orf93	16	30768826	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	7567870	30768826	59585927	135	37015											
HYDIN	54768	broad.mit.edu	37	chr16	71025246	71025246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcacactggaagctttcGtttttcttagttctttttct	6	8	4	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71025246	T	T	71025246	3	4	20	1	0	0	0	0	1	0	0	0	7537	1145	40	3	11771	3	HYDIN	16	71025246	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	40256420	71025246	19329507	136	37016											
RPA1	6117	broad.mit.edu	37	chr17	1783185	1783185	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagttggcggagggggcatCttgtcctataggatggggcc	19	7	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1783185	G	G	1783185	1	3	20	0	1	0	0	0	0	0	0	0	13647	928	32	4		4	RPA1	17	1783185	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08		1783185	79412025	137	37017											
DNAH9	1770	broad.mit.edu	37	chr17	11696840	11696840	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattctcttctcctcagtGgaatgtgtgaaatccacatg	9	10	3	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11696840	T	T	11696840	2	4	20	1	0	0	0	0	0	0	0	1	4648	1335	47	2		2	DNAH9	17	11696840	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08	9913655	11696840	69498370	138	37018											
USP22	23326	broad.mit.edu	37	chr17	20911333	20911333	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggcgttcaaaaaagacagGagcggtaagggagatgcaag	15	6	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20911333	C	C	20911333	1	2	20	0	1	0	0	0	0	0	0	0	17180	1189	41	4		4	USP22	17	20911333	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	9214493	20911333	60283877	139	37019											
SOCS7	30837	broad.mit.edu	37	chr17	36520525	36520525	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattaggttttgagctttctGagagcagcagacccccagcc	10	12	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36520525	C	C	36520525	1	2	20	0	1	0	0	0	0	0	0	0	15033	1305	45	4		4	SOCS7	17	36520525	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	15609192	36520525	44674685	140	37020											
SOCS7	30837	broad.mit.edu	37	chr17	36521153	36521153	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcgtgctcattctgtgctCacatttctgaacctcttgct	7	13	5	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36521153	G	G	36521153	1	3	20	0	1	0	0	0	0	0	0	0	15033	841	29	4		4	SOCS7	17	36521153	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	628	36521153	44674057	141	37021											
PIP4K2B	8396	broad.mit.edu	37	chr17	36955482	36955482	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggggcgtgggagcgcgcGgggccgcgctcagaggggcg	24	11	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36955482	A	A	36955482	1	1	20	0	1	0	0	0	0	0	0	0	12032	1131	39	4		4	PIP4K2B	17	36955482	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	434329	36955482	44239728	142	37022											
SC65	10609	broad.mit.edu	37	chr17	39963161	39963161	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaaggacggggtggggggTgagccataccctgttgccag	20	8	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39963161	G	G	39963161	1	3	20	0	1	0	0	0	0	0	0	0	13979	1711	59	5		5	SC65	17	39963161	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	3007679	39963161	41232049	143	37023											
C17orf65	339201	broad.mit.edu	37	chr17	42254862	42254862	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcacaaaaaagggaagagaGactcagaccttagcccccca	10	12	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42254862	A	A	42254862	1	1	20	0	1	0	0	0	0	0	0	0	1889	957	33	4		4	C17orf65	17	42254862	5'UTR	SNP	G	TCGA-05-4422-01A-01D-1265-08	2291701	42254862	38940348	144	37024											
PHB	5245	broad.mit.edu	37	chr17	47486325	47486325	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagggaggacctaatagCgtctacccagaaatggagcc	12	10	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47486325	T	T	47486325	1	4	20	0	1	0	0	0	0	0	0	0	11909	783	27	4		4	PHB	17	47486325	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	5231463	47486325	33708885	145	37025											
BCAS3	54828	broad.mit.edu	37	chr17	58929102	58929102	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaaagaagccaagtctgAttaataccatataccatgtc	7	8	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58929102	G	G	58929102	1	3	20	0	1	0	0	0	0	0	0	0	1357	348	12	5		5	BCAS3	17	58929102	Intron	SNP	A	TCGA-05-4422-01A-01D-1265-08	11442777	58929102	22266108	146	37026											
MAP3K3	4215	broad.mit.edu	37	chr17	61759287	61759287	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggggggctgggatatgccTgtggcctgtatcagcagacc	16	9	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61759287	A	A	61759287	1	1	20	0	1	0	0	0	0	0	0	0	9343	1595	55	5		5	MAP3K3	17	61759287	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	2830185	61759287	19435923	147	37027											
ABCA9	10350	broad.mit.edu	37	chr17	67047392	67047392	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtttccagttgcattcctgGagaagaagaaagccaaaagg	11	7	0	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67047392	A	A	67047392	1	1	20	0	1	0	0	0	0	0	0	0	39	1189	41	4		4	ABCA9	17	67047392	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	5288105	67047392	14147818	148	37028											
NARF	26502	broad.mit.edu	37	chr17	80426851	80426851	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatctctaaagttcgtttttCaaggacgcagggtagataag	10	6	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80426851	G	G	80426851	1	3	20	0	1	0	0	0	0	0	0	0	10261	841	29	4		4	NARF	17	80426851	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	13379459	80426851	768359	149	37029											
THEG	51298	broad.mit.edu	37	chr19	362332	362332	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgggcttggccagggagatGatccgggggctggccaccac	17	11	0	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	362332	A	A	362332	2	1	20	1	0	0	0	0	0	0	0	1	15980	1280	45	4		4	THEG	19	362332	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08		362332	58766651	150	37030											
STK11	6794	broad.mit.edu	37	chr19	1221229	1221229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctacaacatcaccacggGtctgtaccccttcgaagggg	10	13	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1221229	T	T	1221229	3	4	20	1	0	0	0	0	1	0	0	0	15405	1261	44	3	774	3	STK11	19	1221229	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	858897	1221229	57907754	151	37031											
ZNF536	9745	broad.mit.edu	37	chr19	30936284	30936284	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccctttagaaagcagtcgGgattttttgtcacacgggct	11	9	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30936284	C	C	30936284	2	2	20	1	0	0	0	0	0	0	0	1	18101	1219	43	4		4	ZNF536	19	30936284	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08	29715055	30936284	28192699	152	37032											
IZUMO1	284359	broad.mit.edu	37	chr19	49245654	49245654	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgctctgtcgcccaggctgGaatgcattggcgcgatctcg	13	13	2	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49245654	C	C	49245654	1	2	20	0	1	0	0	0	0	0	0	0	8003	1189	41	4		4	IZUMO1	19	49245654	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	18309370	49245654	9883329	153	37033											
PCK1	5105	broad.mit.edu	37	chr20	56140288	56140289	+	Intron	DEL	GA	-	-													tttctgtgtctgtgtgtgggGagagagagagagagaaagag							TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56140289	-	-	56140288	6	5	20	0	1	1	0	1	0	0	0	0	11675	1189	41	0		0	PCK1	20	56140288	Intron	DEL	GA	TCGA-05-4422-01A-01D-1265-08		56140288	6885232	154	37034											
CDH26	60437	broad.mit.edu	37	chr20	58547105	58547105	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagagattggtttgttttCtctagaagatcatgagaacg	10	6	2	4			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58547105	T	T	58547105	3	4	20	1	0	0	0	0	1	0	0	0	3140	913	32	4	334	4	CDH26	20	58547105	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	2406817	58547105	4478415	155	37035											
TPD52L2	7165	broad.mit.edu	37	chr20	62500839	62500839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggtgaattggagttaagGccctcttggattagtgagag	16	4	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62500839	A	A	62500839	1	1	20	0	1	0	0	0	0	0	0	0	16523	1218	42	4		4	TPD52L2	20	62500839	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	3953734	62500839	524681	156	37036											
ZNF512B	57473	broad.mit.edu	37	chr20	62598683	62598683	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcagggcagggcagtggcTggatagggagaccccagcat	16	9	1	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62598683	A	A	62598683	1	1	20	0	1	0	0	0	0	0	0	0	18084	1595	55	5		5	ZNF512B	20	62598683	Intron	SNP	T	TCGA-05-4422-01A-01D-1265-08	97844	62598683	426837	157	37037											
TIAM1	7074	broad.mit.edu	37	chr21	32595949	32595949	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaagtgagaaaatGggaaacaaatgctaatatct	8	3	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32595949	A	A	32595949	1	1	20	0	1	0	0	0	0	0	0	0	16013	1363	47	4		4	TIAM1	21	32595949	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08		32595949	15533946	158	37038											
SON	6651	broad.mit.edu	37	chr21	34927023	34927023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagatctcgaagtaagcgttCcaaatcttctgaacacaaat	6	9	3	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34927023	A	A	34927023	3	1	20	1	0	0	0	0	1	0	0	0	15040	855	30	3	5496	3	SON	21	34927023	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	2331074	34927023	13202872	159	37039											
MYO18B	84700	broad.mit.edu	37	chr22	26351204	26351204	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggagctttcacaggcGgccacctccgagtcccagca	14	14	1	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26351204	A	A	26351204	2	1	20	1	0	0	0	0	0	0	0	1	10160	1103	39	4		4	MYO18B	22	26351204	Silent	SNP	G	TCGA-05-4422-01A-01D-1265-08		26351204	24953362	160	37040											
SCO2	9997	broad.mit.edu	37	chr22	50962600	50962600	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctgcagcctctccttctCagccctcagggccagccagg	10	18	3	0			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50962600	T	T	50962600	3	4	20	1	0	0	0	0	1	0	0	0	14045	835	29	4	563	4	SCO2	22	50962600	Missense_Mutation	SNP	C	TCGA-05-4422-01A-01D-1265-08	24611396	50962600	341966	161	37041											
FGD1	2245	broad.mit.edu	37	chrX	54482918	54482918	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggtggccaaggaaggGcaggggctagaagggccact	20	7	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54482918	A	A	54482918	1	1	20	0	1	0	0	0	0	0	0	0	5889	1218	42	4		4	FGD1	23	54482918	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08		54482918	100787642	162	37042											
TAF7L	54457	broad.mit.edu	37	chrX	100532459	100532459	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaaaaaaaaaaaaaaaaaGagggaaggacgaaaccatcc	7	6	0	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100532459	A	A	100532459	1	1	20	0	1	0	0	0	0	0	0	0	15652	957	33	4		4	TAF7L	23	100532459	Intron	SNP	G	TCGA-05-4422-01A-01D-1265-08	46049541	100532459	54738101	163	37043											
NRK	203447	broad.mit.edu	37	chrX	105190394	105190394	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agattttcttcagctcagcaGatggatatcacctcatcgat	7	10	5	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105190394	A	A	105190394	3	1	20	1	0	0	0	0	1	0	0	0	10750	942	33	4	4393	4	NRK	23	105190394	Missense_Mutation	SNP	G	TCGA-05-4422-01A-01D-1265-08	4657935	105190394	50080166	164	37044											
FAM122B	159090	broad.mit.edu	37	chrX	133923352	133923352	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcactgacaaaatattaactCttccacacactgcaattttt	2	11	2	1			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133923352	G	G	133923352	1	3	20	0	1	0	0	0	0	0	0	0	5466	928	32	4		4	FAM122B	23	133923352	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	28732958	133923352	21347208	165	37045											
ARHGEF6	9459	broad.mit.edu	37	chrX	135827450	135827450	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctgtgggtttgtctgagAagtattagcagcactaagag	12	7	1	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135827450	T	T	135827450	3	4	20	1	0	0	0	0	1	0	0	0	912	246	9	5	2015	5	ARHGEF6	23	135827450	Missense_Mutation	SNP	A	TCGA-05-4422-01A-01D-1265-08	1904098	135827450	19443110	166	37046											
SLITRK2	84631	broad.mit.edu	37	chrX	144904729	144904729	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctgaccaggcaagacctCtgtcccagaaaaagtgccag	10	13	1	3			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144904729	A	A	144904729	2	1	20	1	0	0	0	0	0	0	0	1	14857	900	32	3		3	SLITRK2	23	144904729	Silent	SNP	C	TCGA-05-4422-01A-01D-1265-08	9077279	144904729	10365831	167	37047											
VMA21	203547	broad.mit.edu	37	chrX	150572261	150572261	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttcccccaatttaagattCtgtgcttttatgacctcttt	4	10	2	2			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150572261	G	G	150572261	1	3	20	0	1	0	0	0	0	0	0	0	17302	928	32	4		4	VMA21	23	150572261	Intron	SNP	C	TCGA-05-4422-01A-01D-1265-08	5667532	150572261	4698299	168	37048											
ACAP3	116983	broad.mit.edu	37	chr1	1231132	1231132	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgaggacagagcggcCacacagggcagaacgggctc	14	14	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1231132	A	A	1231132	2	1	21	1	0	0	0	0	0	0	0	1	120	581	21	2		2	ACAP3	1	1231132	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08		1231132	248019489	1	37049											
MXRA8	54587	broad.mit.edu	37	chr1	1289700	1289700	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcccgcccacctcagtctCctggggccgctggctttgcc	10	20	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1289700	T	T	1289700	1	4	21	0	1	0	0	0	0	0	0	0	10099	870	30	4		4	MXRA8	1	1289700	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	58568	1289700	247960921	2	37050											
NPHP4	261734	broad.mit.edu	37	chr1	5933436	5933436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaggtcaggaagcaacaCcattaggcgaccagcacctg	11	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5933436	A	A	5933436	1	1	21	0	1	0	0	0	0	0	0	0	10676	522	18	3		3	NPHP4	1	5933436	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4643736	5933436	243317185	3	37051											
CAMTA1	23261	broad.mit.edu	37	chr1	7737548	7737548	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctaccattaaggagagctgGacattaaccaatgaagggta	11	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7737548	T	T	7737548	1	4	21	0	1	0	0	0	0	0	0	0	2639	1189	41	3		3	CAMTA1	1	7737548	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1804112	7737548	241513073	4	37052											
CAMTA1	23261	broad.mit.edu	37	chr1	7796975	7796975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatagtgtggtaatttctgGtgctctcccttatagtacaa	9	7	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7796975	T	T	7796975	1	4	21	0	1	0	0	0	0	0	0	0	2639	1276	44	3		3	CAMTA1	1	7796975	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	59427	7796975	241453646	5	37053											
RERE	473	broad.mit.edu	37	chr1	8568612	8568612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccacattctaagatgctgCgcaacagaataaagtgccag	8	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8568612	T	T	8568612	1	4	21	0	1	0	0	0	0	0	0	0	13339	783	27	4		4	RERE	1	8568612	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	771637	8568612	240682009	6	37054											
CA6	765	broad.mit.edu	37	chr1	9009428	9009428	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgcggtacaacccctcCttgaaggggctcaatatgac	11	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009428	A	A	9009428	2	1	21	1	0	0	0	0	0	0	0	1	2547	668	24	2		2	CA6	1	9009428	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	440816	9009428	240241193	7	37055											
UBE4B	10277	broad.mit.edu	37	chr1	10197324	10197324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactttttctcaggggcagGcaattccattgtgaacagta	9	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10197324	T	T	10197324	1	4	21	0	1	0	0	0	0	0	0	0	17009	1218	42	3		3	UBE4B	1	10197324	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1187896	10197324	239053297	8	37056											
MTHFR	4524	broad.mit.edu	37	chr1	11855339	11855339	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctttgattggctcaatcaCgtccttgatctcctgtggca	9	11	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11855339	T	T	11855339	3	4	21	1	0	0	0	0	1	0	0	0	10025	536	19	4	1151	4	MTHFR	1	11855339	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1658015	11855339	237395282	9	37057											
VPS13D	55187	broad.mit.edu	37	chr1	12566864	12566864	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctccccctgatgctgggcGaagccccaggtgtcactcct	11	17	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12566864	A	A	12566864	1	1	21	0	1	0	0	0	0	0	0	0	17319	1073	37	4		4	VPS13D	1	12566864	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	711525	12566864	236683757	10	37058											
PRAMEF1	65121	broad.mit.edu	37	chr1	12853569	12853569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcccttcacctgcctcCctctgggatcactgatgaag	9	16	3	2	rs138008515		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12853569	A	A	12853569	3	1	21	1	0	0	0	0	1	0	0	0	12526	623	22	2	195	2	PRAMEF1	1	12853569	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	286705	12853569	236397052	11	37059											
CELA2B	51032	broad.mit.edu	37	chr1	15813958	15813958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccggagcagccctgagccCcaaggcactgacctgctcac	10	17	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15813958	A	A	15813958	1	1	21	0	1	0	0	0	0	0	0	0	3242	638	22	2		2	CELA2B	1	15813958	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2960389	15813958	233436663	12	37060											
NBPF1	55672	broad.mit.edu	37	chr1	16895686	16895686	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagtcgaataaccttcatcCcaggactcctgggggacttc	10	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16895686	G	G	16895686	3	3	21	1	0	0	0	0	1	0	0	0	10286	624	22	4	956	4	NBPF1	1	16895686	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1081728	16895686	232354935	13	37061											
UBR4	23352	broad.mit.edu	37	chr1	19503937	19503937	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaatggtgaagcaaaaaaGaacgtgttggtctgtacctg	12	5	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19503937	C	C	19503937	1	2	21	0	1	0	0	0	0	0	0	0	17030	957	33	4		4	UBR4	1	19503937	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2608251	19503937	229746684	14	37062											
KIAA0090	23065	broad.mit.edu	37	chr1	19571464	19571464	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtggctacaaccaacttCttggatccaggggaaaattc	9	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19571464	T	T	19571464	2	4	21	1	0	0	0	0	0	0	0	1	8223	912	32	4		4	KIAA0090	1	19571464	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	67527	19571464	229679157	15	37063											
MRTO4	51154	broad.mit.edu	37	chr1	19585098	19585098	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcggggttgctggctttcctCtgcctgctgaaaatgccccc	12	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19585098	T	T	19585098	1	4	21	0	1	0	0	0	0	0	0	0	9946	928	32	4		4	MRTO4	1	19585098	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	13634	19585098	229665523	16	37064											
EPHB2	2048	broad.mit.edu	37	chr1	23191473	23191473	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaggccgagaggacctcgtCtacaacatcatctgcaagag	12	11	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23191473	G	G	23191473	2	3	21	1	0	0	0	0	0	0	0	1	5217	900	32	4		4	EPHB2	1	23191473	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	3606375	23191473	226059148	17	37065											
EPHB2	2048	broad.mit.edu	37	chr1	23191648	23191648	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggctgtgaacggcgttactGaccagagccccttctcgcct	11	14	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23191648	T	T	23191648	3	4	21	1	0	0	0	0	1	0	0	0	5217	1290	45	3	1264	3	EPHB2	1	23191648	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	175	23191648	226058973	18	37066											
AIM1L	55057	broad.mit.edu	37	chr1	26672469	26672469	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggctgcggctgggcgagCctggtggggagcccaccacc	17	15	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26672469	A	A	26672469	1	1	21	0	1	0	0	0	0	0	0	0	431	754	26	3		3	AIM1L	1	26672469	5'Flank	SNP	C	TCGA-05-4424-01A-22D-1855-08	3480821	26672469	222578152	19	37067											
BAI2	576	broad.mit.edu	37	chr1	32204348	32204348	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagggttcagcccaccatCagggacagagtgcttcccac	10	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32204348	A	A	32204348	1	1	21	0	1	0	0	0	0	0	0	0	1304	841	29	3		3	BAI2	1	32204348	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	5531879	32204348	217046273	20	37068											
YARS	8565	broad.mit.edu	37	chr1	33272110	33272110	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccggggtataagaggccactCagcaaagggtgctccacctg	13	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33272110	T	T	33272110	2	4	21	1	0	0	0	0	0	0	0	1	17594	813	29	4		4	YARS	1	33272110	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1067762	33272110	215978511	21	37069											
CSMD2	114784	broad.mit.edu	37	chr1	34401436	34401436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgagcacggcgtggcCctccaggaagaagccaaggt	16	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34401436	A	A	34401436	3	1	21	1	0	0	0	0	1	0	0	0	3979	623	22	2	10210	2	CSMD2	1	34401436	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1129326	34401436	214849185	22	37070											
GRIK3	2899	broad.mit.edu	37	chr1	37307394	37307394	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgtcatcctgtgccccGtacttgccgtcctccaccag	7	19	1	0	rs149891912	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37307394	T	T	37307394	4	4	21	1	0	0	0	0	0	1	0	0	6841	1140	40	3	1314	3	GRIK3	1	37307394	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2905958	37307394	211943227	23	37071											
MTF1	4520	broad.mit.edu	37	chr1	38287773	38287773	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacttcaccccactgggtaTattcatacataatacttaca	3	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38287773	C	C	38287773	1	2	21	0	1	0	0	0	0	0	0	0	10016	1421	49	5		5	MTF1	1	38287773	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	980379	38287773	210962848	24	37072											
MACF1	23499	broad.mit.edu	37	chr1	39902137	39902137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttcattgttgtgttgacCgcgcccaccattacagatta	7	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39902137	A	A	39902137	1	1	21	0	1	0	0	0	0	0	0	0	9232	667	23	1		1	MACF1	1	39902137	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1614364	39902137	209348484	25	37073											
SCMH1	22955	broad.mit.edu	37	chr1	41514592	41514592	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaaagaatcaaagaagcttCaagagtctctgggatagaga	10	6	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41514592	G	G	41514592	1	3	21	0	1	0	0	0	0	0	0	0	14021	841	29	4		4	SCMH1	1	41514592	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1612455	41514592	207736029	26	37074											
FOXJ3	22887	broad.mit.edu	37	chr1	42647591	42647591	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctctctctcttacctgCcatcgttgttcctggagtgc	7	15	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42647591	T	T	42647591	3	4	21	1	0	0	0	0	1	0	0	0	6073	739	26	4	126	4	FOXJ3	1	42647591	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1132999	42647591	206603030	27	37075											
ERMAP	114625	broad.mit.edu	37	chr1	43308638	43308638	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactttcacccacaatttctCtggcccccttcgccctttct	3	18	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43308638	T	T	43308638	3	4	21	1	0	0	0	0	1	0	0	0	5276	913	32	4	1201	4	ERMAP	1	43308638	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	661047	43308638	205941983	28	37076											
BEST4	266675	broad.mit.edu	37	chr1	45250730	45250730	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaagtcggggcagcccctCtgcccacatctccacagagc	9	18	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45250730	G	G	45250730	1	3	21	0	1	0	0	0	0	0	0	0	1412	928	32	4		4	BEST4	1	45250730	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1942092	45250730	203999891	29	37077											
FAF1	11124	broad.mit.edu	37	chr1	51210244	51210244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaactaaattactattgcCaaatctactactgccatatg	3	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51210244	A	A	51210244	1	1	21	0	1	0	0	0	0	0	0	0	5415	609	21	2		2	FAF1	1	51210244	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	5959514	51210244	198040377	30	37078											
ZCCHC11	23318	broad.mit.edu	37	chr1	52903849	52903849	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagctacaaattggcctctCatttattttcctcaaaatgt	4	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52903849	A	A	52903849	1	1	21	0	1	0	0	0	0	0	0	0	17706	841	29	3		3	ZCCHC11	1	52903849	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1693605	52903849	196346772	31	37079											
CDCP2	200008	broad.mit.edu	37	chr1	54606877	54606877	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtggggggcctggtgctGccacagtagtggtgcccacg	19	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54606877	T	T	54606877	2	4	21	1	0	0	0	0	0	0	0	1	3124	1306	46	3		3	CDCP2	1	54606877	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1703028	54606877	194643744	32	37080											
C8B	732	broad.mit.edu	37	chr1	57395350	57395350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaatctctgagctccctGctgccattttcctggccatt	7	14	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57395350	A	A	57395350	1	1	21	0	1	0	0	0	0	0	0	0	2442	1334	46	4		4	C8B	1	57395350	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2788473	57395350	191855271	33	37081											
DNAJC6	9829	broad.mit.edu	37	chr1	65851517	65851517	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaaacagaggaatggatGtcgcccttactgtgatgtac	10	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65851517	T	T	65851517	3	4	21	1	0	0	0	0	1	0	0	0	4693	1377	48	3	778	3	DNAJC6	1	65851517	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	8456167	65851517	183399104	34	37082											
LEPR	3953	broad.mit.edu	37	chr1	66085595	66085595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtataaatgagccttttacGtatttttctcctcagatcat	5	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66085595	T	T	66085595	1	4	21	0	1	0	0	0	0	0	0	0	8800	1160	40	3		3	LEPR	1	66085595	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	234078	66085595	183165026	35	37083											
PDE4B	5142	broad.mit.edu	37	chr1	66458629	66458629	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaggaacttactgcttctGaacctgaggtttgcataaag	9	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66458629	A	A	66458629	1	1	21	0	1	0	0	0	0	0	0	0	11734	1291	45	4		4	PDE4B	1	66458629	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	373034	66458629	182791992	36	37084											
WDR78	79819	broad.mit.edu	37	chr1	67303405	67303405	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggttaccatgggattcttTattgaccagcagcaagccag	11	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67303405	A	A	67303405	2	1	21	1	0	0	0	0	0	0	0	1	17455	1744	61	5		5	WDR78	1	67303405	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	844776	67303405	181947216	37	37085											
IL12RB2	3595	broad.mit.edu	37	chr1	67816592	67816592	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaggaaaaattctccacTatcaggtgaccttgcaggag	10	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67816592	C	C	67816592	3	2	21	1	0	0	0	0	1	0	0	0	7697	1522	53	5	1108	5	IL12RB2	1	67816592	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	513187	67816592	181434029	38	37086											
ZRANB2	9406	broad.mit.edu	37	chr1	71534972	71534972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcaccttgatttcgaccCacgagatctcgaacgttctc	6	14	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71534972	A	A	71534972	3	1	21	1	0	0	0	0	1	0	0	0	18352	594	21	2	285	2	ZRANB2	1	71534972	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3718380	71534972	177715649	39	37087											
SLC44A5	204962	broad.mit.edu	37	chr1	75699662	75699662	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgataatttgaagaggagtGatacctaccataacctataa	7	6	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75699662	A	A	75699662	1	1	21	0	1	0	0	0	0	0	0	0	14753	1305	45	4		4	SLC44A5	1	75699662	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	4164690	75699662	173550959	40	37088											
ASB17	127247	broad.mit.edu	37	chr1	76398013	76398013	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtagaaataaaatcagaGgtaagcatactgtaatcctc	7	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76398013	A	A	76398013	1	1	21	0	1	0	0	0	0	0	0	0	1025	1015	35	4		4	ASB17	1	76398013	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	698351	76398013	172852608	41	37089											
FAM73A	374986	broad.mit.edu	37	chr1	78280765	78280765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacattagaatttaatttGttctgtgtactttttctctc	4	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78280765	T	T	78280765	1	4	21	0	1	0	0	0	0	0	0	0	5668	1392	48	3		3	FAM73A	1	78280765	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1882752	78280765	170969856	42	37090											
DNAJB4	11080	broad.mit.edu	37	chr1	78479070	78479070	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaaacggatgaagatttctCgaaaaaggctaaacgctgat	9	8	1	3	rs141666453		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78479070	G	G	78479070	3	3	21	1	0	0	0	0	1	0	0	0	4662	876	31	4	553	4	DNAJB4	1	78479070	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	198305	78479070	170771551	43	37091											
TTLL7	79739	broad.mit.edu	37	chr1	84385411	84385411	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcaaaggattattcaactCtcgctggaatgaagctgctc	8	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84385411	G	G	84385411	3	3	21	1	0	0	0	0	1	0	0	0	16858	922	32	4	1228	4	TTLL7	1	84385411	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5906341	84385411	164865210	44	37092											
SPATA1	64173	broad.mit.edu	37	chr1	85029554	85029554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcatatttgtttctctTcatatgtcaatgtgttcata	5	6	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85029554	C	C	85029554	1	2	21	0	1	0	0	0	0	0	0	0	15114	1798	62	5		5	SPATA1	1	85029554	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	644143	85029554	164221067	45	37093											
SYDE2	84144	broad.mit.edu	37	chr1	85666082	85666082	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcattcccagggacagcaGacgccctttgtacatccact	7	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85666082	A	A	85666082	2	1	21	1	0	0	0	0	0	0	0	1	15555	933	33	4		4	SYDE2	1	85666082	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	636528	85666082	163584539	46	37094											
GBP6	163351	broad.mit.edu	37	chr1	89849314	89849314	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagagaaggcagtagcagGtatggggcagggctcagctt	17	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89849314	A	A	89849314	5	1	21	1	0	0	0	0	0	0	1	0	6340	1275	44	4	1499	4	GBP6	1	89849314	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	4183232	89849314	159401307	47	37095											
ZNF644	84146	broad.mit.edu	37	chr1	91405710	91405710	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctcttcggtactgaaagTagcaggtgactcagaatcac	11	9	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91405710	A	A	91405710	3	1	21	1	0	0	0	0	1	0	0	0	18187	1638	57	5	2798	5	ZNF644	1	91405710	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1556396	91405710	157844911	48	37096											
SASS6	163786	broad.mit.edu	37	chr1	100568609	100568609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagacaggataaccaatccCacaggttgggtaagtcagtc	12	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100568609	A	A	100568609	3	1	21	1	0	0	0	0	1	0	0	0	13962	594	21	2	413	2	SASS6	1	100568609	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	9162899	100568609	148682012	49	37097											
RTCD1	8634	broad.mit.edu	37	chr1	100746894	100746894	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgatagagagcactaaacaGagagtgagaagacctaaatt	10	5	0	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100746894	A	A	100746894	1	1	21	0	1	0	0	0	0	0	0	0	13829	957	33	4		4	RTCD1	1	100746894	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	178285	100746894	148503727	50	37098											
CDC14A	8556	broad.mit.edu	37	chr1	100843034	100843034	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatttaatgaaattaaagatGaacattgatgttactgaaaa	6	2	0	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100843034	A	A	100843034	1	1	21	0	1	0	0	0	0	0	0	0	3086	1305	45	4		4	CDC14A	1	100843034	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	96140	100843034	148407587	51	37099											
VCAM1	7412	broad.mit.edu	37	chr1	101188930	101188930	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatgtgttccagtctttgtGggaatcccaccttggttgtg	12	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101188930	A	A	101188930	1	1	21	0	1	0	0	0	0	0	0	0	17264	1363	47	4		4	VCAM1	1	101188930	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	345896	101188930	148061691	52	37100											
AMY2B	280	broad.mit.edu	37	chr1	104114861	104114861	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttagaaacatggtgactAgatgtaacaatgttggggta	11	3	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104114861	G	G	104114861	3	3	21	1	0	0	0	0	1	0	0	0	595	412	15	5	304	5	AMY2B	1	104114861	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	2925931	104114861	145135760	53	37101											
VAV3	10451	broad.mit.edu	37	chr1	108116941	108116941	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatttcattacagaccagCgataatggcagaggagcttg	12	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108116941	T	T	108116941	1	4	21	0	1	0	0	0	0	0	0	0	17260	783	27	4		4	VAV3	1	108116941	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4002080	108116941	141133680	54	37102											
C1orf59	113802	broad.mit.edu	37	chr1	109191437	109191437	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagactggtccaaagcatggGacaggggcctttgagccacc	13	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109191437	T	T	109191437	2	4	21	1	0	0	0	0	0	0	0	1	2073	1161	41	3		3	C1orf59	1	109191437	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1074496	109191437	140059184	55	37103											
DRAM2	128338	broad.mit.edu	37	chr1	111663261	111663261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaacatatataatgagcCcataccaaaggtaagcacag	6	9	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111663261	A	A	111663261	3	1	21	1	0	0	0	0	1	0	0	0	4794	623	22	2	422	2	DRAM2	1	111663261	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2471824	111663261	137587360	56	37104											
CHIA	27159	broad.mit.edu	37	chr1	111861169	111861169	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagctgagaagctcatcGttggattccctacctatgga	9	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111861169	A	A	111861169	3	1	21	1	0	0	0	0	1	0	0	0	3373	1145	40	4	814	4	CHIA	1	111861169	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	197908	111861169	137389452	57	37105											
DENND2C	163259	broad.mit.edu	37	chr1	115147479	115147479	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaatggctgtacccatttcTcaaatactctgatttatttt	4	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115147479	A	A	115147479	1	1	21	0	1	0	0	0	0	0	0	0	4470	1566	54	5		5	DENND2C	1	115147479	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	3286310	115147479	134103142	58	37106											
HAO2	51179	broad.mit.edu	37	chr1	119925580	119925580	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagagatgtgtctgaggtGgacaccagaaccacaatcca	11	10	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119925580	T	T	119925580	2	4	21	1	0	0	0	0	0	0	0	1	7018	1335	47	2		2	HAO2	1	119925580	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	4778101	119925580	129325041	59	37107											
NOTCH2	4853	broad.mit.edu	37	chr1	120459031	120459031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtactcttggcactgggcCgtctagacttcttgcccatt	10	12	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120459031	A	A	120459031	3	1	21	1	0	0	0	0	1	0	0	0	10643	652	23	1	1105	1	NOTCH2	1	120459031	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	533451	120459031	128791590	60	37108											
NOTCH2	4853	broad.mit.edu	37	chr1	120512153	120512153	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgccttcccctctgggcaCatgcaagagaaggaggccac	11	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120512153	G	G	120512153	3	3	21	1	0	0	0	0	1	0	0	0	10643	478	17	4	6442	4	NOTCH2	1	120512153	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	53122	120512153	128738468	61	37109											
NBPF9	400818	broad.mit.edu	37	chr1	144816373	144816373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccattttgctttctgggacCactctcttaatgccgcctgt	7	13	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144816373	T	T	144816373	1	4	21	0	1	0	0	0	0	0	0	0	10294	609	21	4		4	NBPF9	1	144816373	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	24304220	144816373	104434248	62	37110											
NOTCH2NL	388677	broad.mit.edu	37	chr1	145273425	145273425	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggatacctatgagtgcacCtgtcaagtcgggtttacagg	13	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145273425	T	T	145273425	2	4	21	1	0	0	0	0	0	0	0	1	10644	668	24	4		4	NOTCH2NL	1	145273425	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	457052	145273425	103977196	63	37111											
FMO5	2330	broad.mit.edu	37	chr1	146684991	146684991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaccacttcccattggCctgaagtggcaaaatcaggc	10	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146684991	A	A	146684991	3	1	21	1	0	0	0	0	1	0	0	0	6016	739	26	3	1397	3	FMO5	1	146684991	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1411566	146684991	102565630	64	37112											
MTMR11	10903	broad.mit.edu	37	chr1	149902485	149902485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttacacacaatcctccCacatctagagacaaatcatg	5	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149902485	A	A	149902485	1	1	21	0	1	0	0	0	0	0	0	0	10034	609	21	2		2	MTMR11	1	149902485	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3217494	149902485	99348136	65	37113											
MTMR11	10903	broad.mit.edu	37	chr1	149903316	149903316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgagatcacgatcaccgcGctctgggtgataaagaggaa	12	8	3	3	rs151219180		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149903316	T	T	149903316	3	4	21	1	0	0	0	0	1	0	0	0	10034	1087	38	3	1062	3	MTMR11	1	149903316	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	831	149903316	99347305	66	37114											
SETDB1	9869	broad.mit.edu	37	chr1	150919302	150919302	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtatatatcctctacacagGacaggatagattctagcctt	8	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150919302	T	T	150919302	1	4	21	0	1	0	0	0	0	0	0	0	14251	1189	41	3		3	SETDB1	1	150919302	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1015986	150919302	98331319	67	37115											
FAM63A	55793	broad.mit.edu	37	chr1	150980932	150980932	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggactccggagcgcccgctTacgcagttcctcccggggtc	13	17	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150980932	G	G	150980932	1	3	21	0	1	0	0	0	0	0	0	0	5647	1769	61	5		5	FAM63A	1	150980932	5'Flank	SNP	T	TCGA-05-4424-01A-22D-1855-08	61630	150980932	98269689	68	37116											
LYSMD1	388695	broad.mit.edu	37	chr1	151137501	151137501	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagggccactacattcttcTcaggactaaatccctcctga	7	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151137501	C	C	151137501	1	2	21	0	1	0	0	0	0	0	0	0	9212	1566	54	5		5	LYSMD1	1	151137501	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	156569	151137501	98113120	69	37117											
RFX5	5993	broad.mit.edu	37	chr1	151314798	151314798	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaagcctccttttggcttCtgctgcccttgatgacactc	8	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151314798	T	T	151314798	3	4	21	1	0	0	0	0	1	0	0	0	13374	913	32	4	139	4	RFX5	1	151314798	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	177297	151314798	97935823	70	37118											
RFX5	5993	broad.mit.edu	37	chr1	151314850	151314850	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaccaagggaattttatcttCtgcttctttggtatgctggg	11	7	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151314850	T	T	151314850	3	4	21	1	0	0	0	0	1	0	0	0	13374	922	32	4	191	4	RFX5	1	151314850	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	52	151314850	97935771	71	37119											
TCHHL1	126637	broad.mit.edu	37	chr1	152057310	152057310	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgtcccccactgctgaAtattttattatttgtttttg	8	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152057310	G	G	152057310	1	3	21	0	1	0	0	0	0	0	0	0	15823	116	4	5		5	TCHHL1	1	152057310	3'UTR	SNP	A	TCGA-05-4424-01A-22D-1855-08	742460	152057310	97193311	72	37120											
HRNR	388697	broad.mit.edu	37	chr1	152195503	152195503	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccaagtaaggacaatccTctaggatgtttgacatatgt	8	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152195503	C	C	152195503	1	2	21	0	1	0	0	0	0	0	0	0	7426	1566	54	5		5	HRNR	1	152195503	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	138193	152195503	97055118	73	37121											
FLG	2312	broad.mit.edu	37	chr1	152280610	152280611	+	Frame_Shift_Ins	INS	-	A	A													ctcagaatcttctgagtgtcINScctcactgtcactgtcctgg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152280611	A	A	152280610	7	5	21	1	0	1	1	0	0	0	0	0	5979	855	30	0	5437	0	FLG	1	152280610	Frame_Shift_Ins	INS	-	TCGA-05-4424-01A-22D-1855-08	85107	152280610	96970011	74	37122											
FLG	2312	broad.mit.edu	37	chr1	152280761	152280761	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctgagtgcctagagccatCtcctgattgttccttgtcat	8	13	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152280761	A	A	152280761	3	1	21	1	0	0	0	0	1	0	0	0	5979	913	32	3	5588	3	FLG	1	152280761	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	151	152280761	96969860	75	37123											
FLG2	388698	broad.mit.edu	37	chr1	152324299	152324299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtgtctctcatgaactgagGatcctgactctggatagtga	11	9	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152324299	T	T	152324299	3	4	21	1	0	0	0	0	1	0	0	0	5980	1174	41	3	1216	3	FLG2	1	152324299	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	43538	152324299	96926322	76	37124											
CRNN	49860	broad.mit.edu	37	chr1	152382233	152382233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgagtggtcatcaaccCattcctcaccaaccactgtg	6	16	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152382233	A	A	152382233	3	1	21	1	0	0	0	0	1	0	0	0	3924	595	21	2	166	2	CRNN	1	152382233	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	57934	152382233	96868388	77	37125											
CRNN	49860	broad.mit.edu	37	chr1	152384754	152384754	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaaaagttcccttggaggctCcataatcaacctcagctatt	7	11	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152384754	G	G	152384754	1	3	21	0	1	0	0	0	0	0	0	0	3924	870	30	4		4	CRNN	1	152384754	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2521	152384754	96865867	78	37126											
LCE2B	26239	broad.mit.edu	37	chr1	152659293	152659293	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaagagtttcattattatCtttcaggttgactaaactct	5	6	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152659293	T	T	152659293	1	4	21	0	1	0	0	0	0	0	0	0	8738	928	32	4		4	LCE2B	1	152659293	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	274539	152659293	96591328	79	37127											
KPRP	448834	broad.mit.edu	37	chr1	152733726	152733726	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtgatgtgtttccagagcgGaggggtcaggatggccatgg	19	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152733726	C	C	152733726	2	2	21	1	0	0	0	0	0	0	0	1	8507	1161	41	4		4	KPRP	1	152733726	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	74433	152733726	96516895	80	37128											
SPRR1B	6699	broad.mit.edu	37	chr1	153004868	153004868	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaccccaccccctcagcTtcagcagcagcaggtgaaac	8	17	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153004868	C	C	153004868	3	2	21	1	0	0	0	0	1	0	0	0	15214	1609	56	5	49	5	SPRR1B	1	153004868	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	271142	153004868	96245753	81	37129											
SPRR2B	6701	broad.mit.edu	37	chr1	153043118	153043118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttgctcttcggtggataCtttggctggcagggtgggga	16	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153043118	A	A	153043118	3	1	21	1	0	0	0	0	1	0	0	0	15216	564	20	3	24	3	SPRR2B	1	153043118	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	38250	153043118	96207503	82	37130											
LELP1	149018	broad.mit.edu	37	chr1	153177535	153177535	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacctccaccatgtacaaCgctgtggggctggagactga	12	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153177535	A	A	153177535	1	1	21	0	1	0	0	0	0	0	0	0	8790	551	19	3		3	LELP1	1	153177535	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	134417	153177535	96073086	83	37131											
CHRNB2	1141	broad.mit.edu	37	chr1	154544067	154544067	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgctagccatccttgtcttCtacctgccatccgactgtgg	8	15	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154544067	T	T	154544067	2	4	21	1	0	0	0	0	0	0	0	1	3422	912	32	4		4	CHRNB2	1	154544067	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1366532	154544067	94706554	84	37132											
PKLR	5313	broad.mit.edu	37	chr1	155261544	155261544	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagggaaggtctaggtagctCaccactttcaatgccaaatt	9	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155261544	T	T	155261544	1	4	21	0	1	0	0	0	0	0	0	0	12071	841	29	4		4	PKLR	1	155261544	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	717477	155261544	93989077	85	37133											
YY1AP1	55249	broad.mit.edu	37	chr1	155631238	155631238	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatgaaaaaaatgcgcatGaattacattccttctggaaa	6	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155631238	A	A	155631238	1	1	21	0	1	0	0	0	0	0	0	0	17635	1305	45	4		4	YY1AP1	1	155631238	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	369694	155631238	93619383	86	37134											
DAP3	7818	broad.mit.edu	37	chr1	155697461	155697461	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctacaacaaacagcgctttGatcaacctttagaggcttca	7	11	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155697461	C	C	155697461	3	2	21	1	0	0	0	0	1	0	0	0	4267	1290	45	4	557	4	DAP3	1	155697461	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	66223	155697461	93553160	87	37135											
KIAA0907	22889	broad.mit.edu	37	chr1	155887306	155887306	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taacctggtatccaagcagtCcagattcccgttcatctggt	8	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155887306	T	T	155887306	3	4	21	1	0	0	0	0	1	0	0	0	8269	855	30	4	436	4	KIAA0907	1	155887306	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	189845	155887306	93363315	88	37136											
SMG5	23381	broad.mit.edu	37	chr1	156237153	156237153	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaagcagtgacacaggagTgaagaggctgcttgtggaag	16	7	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156237153	G	G	156237153	1	3	21	0	1	0	0	0	0	0	0	0	14910	1711	59	5		5	SMG5	1	156237153	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	349847	156237153	93013468	89	37137											
NTRK1	4914	broad.mit.edu	37	chr1	156846229	156846230	+	Missense_Mutation	DNP	TC	AT	AT													cgagagtgctcggcaggactTccagcgtgaggctgagctgc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	156846230	AT	AT	156846229	3	1	21	1	0	0	0	0	1	0	0	0	10801	1783	62	5	1854	5	NTRK1	1	156846229	Missense_Mutation	DNP	TC	TCGA-05-4424-01A-22D-1855-08	609076	156846229	92404392	90	37138											
FCRL5	83416	broad.mit.edu	37	chr1	157490787	157490787	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattttgtccgcatctgtggCccgggcacgggaaacttacc	11	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157490787	T	T	157490787	1	4	21	0	1	0	0	0	0	0	0	0	5855	754	26	4		4	FCRL5	1	157490787	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	644558	157490787	91759834	91	37139											
FCRL5	83416	broad.mit.edu	37	chr1	157497282	157497282	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagagatggaggctgtgtaGgcaccaagcctgacaggatg	15	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157497282	C	C	157497282	1	2	21	0	1	0	0	0	0	0	0	0	5855	1015	35	4		4	FCRL5	1	157497282	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	6495	157497282	91753339	92	37140											
FCRL5	83416	broad.mit.edu	37	chr1	157497603	157497603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggagagcctctcggggcCtcacagtgaagctccagcag	16	12	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157497603	A	A	157497603	3	1	21	1	0	0	0	0	1	0	0	0	5855	680	24	2	1205	2	FCRL5	1	157497603	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	321	157497603	91753018	93	37141											
FCRL5	83416	broad.mit.edu	37	chr1	157513947	157513947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaactcccattctcacaGgtacgagttttttctacaga	6	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157513947	T	T	157513947	1	4	21	0	1	0	0	0	0	0	0	0	5855	1015	35	2		2	FCRL5	1	157513947	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	16344	157513947	91736674	94	37142											
CD5L	922	broad.mit.edu	37	chr1	157805484	157805484	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttatctccagcactgacAgttgggaaagtatgagatgt	11	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157805484	G	G	157805484	1	3	21	0	1	0	0	0	0	0	0	0	3057	203	7	5		5	CD5L	1	157805484	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	291537	157805484	91445137	95	37143											
KIRREL	55243	broad.mit.edu	37	chr1	158059485	158059485	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagtttttaactggttctGacttgtgtcttcttgcttgc	9	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158059485	T	T	158059485	1	4	21	0	1	0	0	0	0	0	0	0	8395	1305	45	3		3	KIRREL	1	158059485	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	254001	158059485	91191136	96	37144											
CD1D	912	broad.mit.edu	37	chr1	158152621	158152621	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcctggagcctctaatGcagagttttcactttaagat	10	8	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158152621	A	A	158152621	1	1	21	0	1	0	0	0	0	0	0	0	3007	1334	46	4		4	CD1D	1	158152621	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	93136	158152621	91098000	97	37145											
CD1D	912	broad.mit.edu	37	chr1	158153982	158153982	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggaacccaggacctctGgacctcaggttcctaagact	9	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158153982	T	T	158153982	1	4	21	0	1	0	0	0	0	0	0	0	3007	1363	47	2		2	CD1D	1	158153982	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	1361	158153982	91096639	98	37146											
CD1E	913	broad.mit.edu	37	chr1	158325578	158325578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctctggcctggggtgccCttcaaaattccatttttttt	9	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325578	A	A	158325578	1	1	21	0	1	0	0	0	0	0	0	0	3008	696	24	2		2	CD1E	1	158325578	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	171596	158325578	90925043	99	37147											
OR10T2	128360	broad.mit.edu	37	chr1	158368994	158368994	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagatggtcttggtgtctGagagcaggtggaccagcagc	17	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158368994	T	T	158368994	4	4	21	1	0	0	0	0	0	1	0	0	11013	1294	45	3	683	3	OR10T2	1	158368994	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	43416	158368994	90881627	100	37148											
SPTA1	6708	broad.mit.edu	37	chr1	158597410	158597410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggaattcctgaactagCtcaccttatttaggatgtct	8	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158597410	A	A	158597410	1	1	21	0	1	0	0	0	0	0	0	0	15234	812	28	3		3	SPTA1	1	158597410	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	228416	158597410	90653211	101	37149											
SPTA1	6708	broad.mit.edu	37	chr1	158604298	158604298	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaaataaccaaattgaaGagaagaaaattgattcattc	6	4	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158604298	A	A	158604298	1	1	21	0	1	0	0	0	0	0	0	0	15234	957	33	4		4	SPTA1	1	158604298	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	6888	158604298	90646323	102	37150											
SPTA1	6708	broad.mit.edu	37	chr1	158612255	158612255	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcaatcagggagttcccCaggttgatgacgccatgcac	10	13	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158612255	A	A	158612255	2	1	21	1	0	0	0	0	0	0	0	1	15234	581	21	2		2	SPTA1	1	158612255	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	7957	158612255	90638366	103	37151											
SPTA1	6708	broad.mit.edu	37	chr1	158612641	158612641	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtaggattcatcacagGctgtgggcagcatctcactg	11	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158612641	A	A	158612641	3	1	21	1	0	0	0	0	1	0	0	0	15234	1203	42	4	2775	4	SPTA1	1	158612641	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	386	158612641	90637980	104	37152											
SPTA1	6708	broad.mit.edu	37	chr1	158618322	158618322	+	Frame_Shift_Del	DEL	C	-	-													atctcccaggggtacgaggtCcctttcaaagccctcatgcc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158618322	-	-	158618322	7	5	21	1	0	1	0	1	0	0	0	0	15234	855	30	0	3676	0	SPTA1	1	158618322	Frame_Shift_Del	DEL	C	TCGA-05-4424-01A-22D-1855-08	5681	158618322	90632299	105	37153											
SPTA1	6708	broad.mit.edu	37	chr1	158621341	158621341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaatctaccatacttacCtgtccatctctgcccctaca	3	16	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158621341	A	A	158621341	1	1	21	0	1	0	0	0	0	0	0	0	15234	696	24	2		2	SPTA1	1	158621341	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3019	158621341	90629280	106	37154											
SPTA1	6708	broad.mit.edu	37	chr1	158623071	158623071	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccagaacttactggttctCaatctgctcctggcgctggg	10	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158623071	T	T	158623071	3	4	21	1	0	0	0	0	1	0	0	0	15234	835	29	4	4202	4	SPTA1	1	158623071	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1730	158623071	90627550	107	37155											
SPTA1	6708	broad.mit.edu	37	chr1	158623307	158623307	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagtctcttggcccaggcaCaggttaatggcaaagataag	11	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158623307	G	G	158623307	1	3	21	0	1	0	0	0	0	0	0	0	15234	493	17	4		4	SPTA1	1	158623307	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	236	158623307	90627314	108	37156											
SPTA1	6708	broad.mit.edu	37	chr1	158637767	158637767	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttggccagttttctgtAtgttttccagctgggtctta	9	9	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158637767	G	G	158637767	3	3	21	1	0	0	0	0	1	0	0	0	15234	449	16	5	5492	5	SPTA1	1	158637767	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	14460	158637767	90612854	109	37157											
SPTA1	6708	broad.mit.edu	37	chr1	158644316	158644316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcctcctactgggcagCctttcttctctaccttatgc	5	18	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158644316	A	A	158644316	1	1	21	0	1	0	0	0	0	0	0	0	15234	754	26	3		3	SPTA1	1	158644316	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6549	158644316	90606305	110	37158											
OR6K3	391114	broad.mit.edu	37	chr1	158687521	158687521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcatttgatagcgaagagGgttgcagatggcaacgtatc	13	6	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158687521	T	T	158687521	3	4	21	1	0	0	0	0	1	0	0	0	11297	1232	43	2	564	2	OR6K3	1	158687521	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	43205	158687521	90563100	111	37159											
CADM3	57863	broad.mit.edu	37	chr1	159161887	159161887	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagtatctcatgagttatcTttctccgtgaaaaccatggg	9	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159161887	A	A	159161887	1	1	21	0	1	0	0	0	0	0	0	0	2594	1624	56	5		5	CADM3	1	159161887	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	474366	159161887	90088734	112	37160											
DARC	2532	broad.mit.edu	37	chr1	159175730	159175730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcccaggcctcaccctGgggctcactgtgggaatttg	13	13	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159175730	T	T	159175730	2	4	21	1	0	0	0	0	0	0	0	1	4273	1335	47	2		2	DARC	1	159175730	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	13843	159175730	90074891	113	37161											
FCER1A	2205	broad.mit.edu	37	chr1	159272706	159272706	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttggtgtttcaacatgtcTgggcattgctttcctctcac	8	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159272706	A	A	159272706	1	1	21	0	1	0	0	0	0	0	0	0	5831	1595	55	5		5	FCER1A	1	159272706	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	96976	159272706	89977915	114	37162											
KCNJ10	3766	broad.mit.edu	37	chr1	160011198	160011198	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatcagacattgctgatGcgcacactaagggcactgcc	11	12	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160011198	T	T	160011198	2	4	21	1	0	0	0	0	0	0	0	1	8114	1306	46	3		3	KCNJ10	1	160011198	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	738492	160011198	89239423	115	37163											
DCAF8	50717	broad.mit.edu	37	chr1	160209744	160209744	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccgctcccgaagggcagGgagggcttgccagcgaggtc	16	14	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160209744	A	A	160209744	3	1	21	1	0	0	0	0	1	0	0	0	4309	1232	43	4	1371	4	DCAF8	1	160209744	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	198546	160209744	89040877	116	37164											
DCAF8	50717	broad.mit.edu	37	chr1	160249708	160249708	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaggatccagaagaggaatCtaatgaatgatctctctatt	9	6	3	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160249708	G	G	160249708	1	3	21	0	1	0	0	0	0	0	0	0	4309	928	32	4		4	DCAF8	1	160249708	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	39964	160249708	89000913	117	37165											
DCAF8	50717	broad.mit.edu	37	chr1	160249730	160249730	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgaatgatctctctatttCttctgagagagatcacaaga	7	7	5	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160249730	G	G	160249730	1	3	21	0	1	0	0	0	0	0	0	0	4309	928	32	4		4	DCAF8	1	160249730	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	22	160249730	89000891	118	37166											
LY9	4063	broad.mit.edu	37	chr1	160784514	160784514	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgctcagaggcctccagCgtcaccagcatgacacatgt	11	13	2	2	rs145903479	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160784514	G	G	160784514	3	3	21	1	0	0	0	0	1	0	0	0	9189	767	27	4	1181	4	LY9	1	160784514	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	534784	160784514	88466107	119	37167											
TOMM40L	84134	broad.mit.edu	37	chr1	161198067	161198067	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcggccaggcgaagagggGgccatcttgacactggctgg	18	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161198067	T	T	161198067	2	4	21	1	0	0	0	0	0	0	0	1	16482	1219	43	2		2	TOMM40L	1	161198067	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	413553	161198067	88052554	120	37168											
FCGR3A	2214	broad.mit.edu	37	chr1	161519571	161519571	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaagatatccggagccCtaaagggaccaaaccgacta	8	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161519571	A	A	161519571	5	1	21	1	0	0	0	0	0	0	1	0	5841	695	24	2	828	2	FCGR3A	1	161519571	Splice_Site	SNP	C	TCGA-05-4424-01A-22D-1855-08	321504	161519571	87731050	121	37169											
FCGR3B	2215	broad.mit.edu	37	chr1	161596073	161596073	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgatgaaaatacttcctgtCtttgccattctgtaaatatg	6	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161596073	G	G	161596073	3	3	21	1	0	0	0	0	1	0	0	0	5842	913	32	4	270	4	FCGR3B	1	161596073	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	76502	161596073	87654548	122	37170											
FCGR3B	2215	broad.mit.edu	37	chr1	161599655	161599655	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtcgttgactgtggcagCgtcaatgaagtagctcgagg	14	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161599655	T	T	161599655	3	4	21	1	0	0	0	0	1	0	0	0	5842	768	27	4	481	4	FCGR3B	1	161599655	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3582	161599655	87650966	123	37171											
ATF6	22926	broad.mit.edu	37	chr1	161821408	161821408	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtatattctgtttactatAtttttgtttccatgaaaagt	5	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161821408	T	T	161821408	1	4	21	0	1	0	0	0	0	0	0	0	1088	464	16	5		5	ATF6	1	161821408	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	221753	161821408	87429213	124	37172											
NUF2	83540	broad.mit.edu	37	chr1	163297403	163297403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttgtttgtttgtttGttttgttttgctgcagttct	8	3	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163297403	T	T	163297403	1	4	21	0	1	0	0	0	0	0	0	0	10842	1392	48	3		3	NUF2	1	163297403	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1475995	163297403	85953218	125	37173											
SELP	6403	broad.mit.edu	37	chr1	169560754	169560754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaacaagatgaaagagaGggtcattaaggatagaaatt	10	2	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169560754	T	T	169560754	1	4	21	0	1	0	0	0	0	0	0	0	14132	1015	35	2		2	SELP	1	169560754	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	6263351	169560754	79689867	126	37174											
FMO3	2328	broad.mit.edu	37	chr1	171076937	171076937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgtaatggtttgttccgGacatcatgtgtatcccaacc	9	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171076937	T	T	171076937	3	4	21	1	0	0	0	0	1	0	0	0	6014	1174	41	3	453	3	FMO3	1	171076937	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1516183	171076937	78173684	127	37175											
FMO2	2327	broad.mit.edu	37	chr1	171165890	171165890	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagagtgctgtctttgacGcagttatggtttgcagtggc	14	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171165890	A	A	171165890	3	1	21	1	0	0	0	0	1	0	0	0	6013	1087	38	4	434	4	FMO2	1	171165890	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	88953	171165890	78084731	128	37176											
FMO1	2326	broad.mit.edu	37	chr1	171240283	171240283	+	Intron	DEL	G	-	-													tgtatttttcctttagctttGcagccttcttttcacaaggc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171240283	-	-	171240283	6	5	21	0	1	1	0	1	0	0	0	0	6012	1334	46	0		0	FMO1	1	171240283	Intron	DEL	G	TCGA-05-4424-01A-22D-1855-08	74393	171240283	78010338	129	37177											
METTL13	51603	broad.mit.edu	37	chr1	171759628	171759628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggacaggaagaagcagcGgcctgctgatgcggaggacc	16	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171759628	T	T	171759628	3	4	21	1	0	0	0	0	1	0	0	0	9590	1116	39	1	1364	1	METTL13	1	171759628	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	519345	171759628	77490993	130	37178											
DNM3	26052	broad.mit.edu	37	chr1	172376984	172376984	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctccctgttagactaaacGaagtgtctggcatggcaatt	9	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172376984	A	A	172376984	1	1	21	0	1	0	0	0	0	0	0	0	4713	1073	37	4		4	DNM3	1	172376984	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	617356	172376984	76873637	131	37179											
RABGAP1L	9910	broad.mit.edu	37	chr1	174244990	174244990	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatccatgggaaagagctAtgatgggagagcttatgtca	14	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174244990	G	G	174244990	3	3	21	1	0	0	0	0	1	0	0	0	13073	449	16	5	1103	5	RABGAP1L	1	174244990	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1868006	174244990	75005631	132	37180											
RABGAP1L	9910	broad.mit.edu	37	chr1	174274250	174274250	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccaatgtcaccccaggatGatgaagcagaagagggtaag	13	8	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174274250	A	A	174274250	3	1	21	1	0	0	0	0	1	0	0	0	13073	1290	45	4	1488	4	RABGAP1L	1	174274250	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	29260	174274250	74976371	133	37181											
TNR	7143	broad.mit.edu	37	chr1	175355157	175355157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgcgtctctcccccacCgcagccttacctgttgtgaa	8	16	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175355157	A	A	175355157	1	1	21	0	1	0	0	0	0	0	0	0	16461	667	23	1		1	TNR	1	175355157	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1080907	175355157	73895464	134	37182											
PAPPA2	60676	broad.mit.edu	37	chr1	176525883	176525883	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggcaatctgagctgctggGagatgatgacgcttatctcg	14	8	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176525883	C	C	176525883	3	2	21	1	0	0	0	0	1	0	0	0	11527	1174	41	4	427	4	PAPPA2	1	176525883	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1170726	176525883	72724738	135	37183											
PAPPA2	60676	broad.mit.edu	37	chr1	176679222	176679222	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctacactcccaaaggataCttggatcaatgggctacccg	8	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176679222	A	A	176679222	4	1	21	1	0	0	0	0	0	1	0	0	11527	576	20	3	3652	3	PAPPA2	1	176679222	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	153339	176679222	72571399	136	37184											
ASTN1	460	broad.mit.edu	37	chr1	176845691	176845691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accttgagccttgacatcatCcaccacggggcatggggtct	11	13	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176845691	A	A	176845691	3	1	21	1	0	0	0	0	1	0	0	0	1068	855	30	3	455	3	ASTN1	1	176845691	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	166469	176845691	72404930	137	37185											
FAM5B	57795	broad.mit.edu	37	chr1	177249959	177249959	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccttcctggaggaagcgCatgctgctcaccctgaagag	12	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177249959	A	A	177249959	2	1	21	1	0	0	0	0	0	0	0	1	5644	697	25	3		3	FAM5B	1	177249959	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	404268	177249959	72000662	138	37186											
C1orf49	84066	broad.mit.edu	37	chr1	178489525	178489525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaatgcagaaagatatgGatgagaagatggacatttta	12	2	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178489525	T	T	178489525	3	4	21	1	0	0	0	0	1	0	0	0	2063	1174	41	3	341	3	C1orf49	1	178489525	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1239566	178489525	70761096	139	37187											
ABL2	27	broad.mit.edu	37	chr1	179087719	179087719	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagaggtaagttttacaCacctatggatgaaattcttc	9	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179087719	G	G	179087719	1	3	21	0	1	0	0	0	0	0	0	0	93	493	17	4		4	ABL2	1	179087719	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	598194	179087719	70162902	140	37188											
XPR1	9213	broad.mit.edu	37	chr1	180832881	180832881	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatggtgttcttttacctGtggattgtcttttatatcat	7	6	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180832881	T	T	180832881	2	4	21	1	0	0	0	0	0	0	0	1	17578	1364	48	3		3	XPR1	1	180832881	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1745162	180832881	68417740	141	37189											
CACNA1E	777	broad.mit.edu	37	chr1	181765848	181765848	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggggcagggagcggggaCgatcaaaagagcgaaagcat	18	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181765848	G	G	181765848	3	3	21	1	0	0	0	0	1	0	0	0	2568	528	19	4	6306	4	CACNA1E	1	181765848	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	932967	181765848	67484773	142	37190											
NMNAT2	23057	broad.mit.edu	37	chr1	183221975	183221975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcaccccatttgtagcCttttctcaggttgagtaaat	7	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183221975	A	A	183221975	1	1	21	0	1	0	0	0	0	0	0	0	10594	696	24	2		2	NMNAT2	1	183221975	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1456127	183221975	66028646	143	37191											
EDEM3	80267	broad.mit.edu	37	chr1	184681671	184681671	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgtcaaaaataatgtcttCtttatcagcaaataacaggt	5	6	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184681671	G	G	184681671	3	3	21	1	0	0	0	0	1	0	0	0	4953	922	32	4	1394	4	EDEM3	1	184681671	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1459696	184681671	64568950	144	37192											
FAM129A	116496	broad.mit.edu	37	chr1	184792938	184792939	+	Intron	DNP	CC	AA	AA													ggctacatctgagcatcaggCcaactaaaaatgtcctgatt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	184792939	AA	AA	184792938	1	1	21	0	1	0	0	0	0	0	0	0	5482	754	26	3		3	FAM129A	1	184792938	Intron	DNP	CC	TCGA-05-4424-01A-22D-1855-08	111267	184792938	64457683	145	37193											
PTGS2	5743	broad.mit.edu	37	chr1	186643804	186643804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaagatggcatctggcCgaggcttttctaccagaagg	11	11	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186643804	A	A	186643804	3	1	21	1	0	0	0	0	1	0	0	0	12862	652	23	1	322	1	PTGS2	1	186643804	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1850866	186643804	62606817	146	37194											
PTGS2	5743	broad.mit.edu	37	chr1	186646911	186646911	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatcagggatgaactttcttCttagaagcaatttttccaca	7	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186646911	G	G	186646911	3	3	21	1	0	0	0	0	1	0	0	0	12862	913	32	4	1329	4	PTGS2	1	186646911	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3107	186646911	62603710	147	37195											
FAM5C	339479	broad.mit.edu	37	chr1	190067232	190067232	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcagattggatcctcacCacctcactagtagacagctt	8	12	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067232	A	A	190067232	2	1	21	1	0	0	0	0	0	0	0	1	5645	581	21	2		2	FAM5C	1	190067232	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	3420321	190067232	59183389	148	37196											
FAM5C	339479	broad.mit.edu	37	chr1	190129899	190129899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaggaaaagttgtttcatGctgttctccagttgttcata	8	6	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190129899	T	T	190129899	3	4	21	1	0	0	0	0	1	0	0	0	5645	1310	46	3	1225	3	FAM5C	1	190129899	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	62667	190129899	59120722	149	37197											
FAM5C	339479	broad.mit.edu	37	chr1	190203503	190203503	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattttaccaacataccTtgcaactgaatcttattctc	3	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190203503	A	A	190203503	3	1	21	1	0	0	0	0	1	0	0	0	5645	1623	56	5	1593	5	FAM5C	1	190203503	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	73604	190203503	59047118	150	37198											
RGS18	64407	broad.mit.edu	37	chr1	192150570	192150570	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atatatgagaaatttatacaGactgatgccccaaaagaggt	8	6	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192150570	T	T	192150570	3	4	21	1	0	0	0	0	1	0	0	0	13409	933	33	3	446	3	RGS18	1	192150570	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1947067	192150570	57100051	151	37199											
TROVE2	6738	broad.mit.edu	37	chr1	193029186	193029186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgtcggcatcgctccCcacaggccgacgtcgagagg	13	15	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193029186	T	T	193029186	1	4	21	0	1	0	0	0	0	0	0	0	16701	638	22	4		4	TROVE2	1	193029186	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	878616	193029186	56221435	152	37200											
KCNT2	343450	broad.mit.edu	37	chr1	196227521	196227521	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccgcagcaagggatggtccGactgatcactggatgttgag	14	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196227521	T	T	196227521	4	4	21	1	0	0	0	0	0	1	0	0	8162	1059	37	3	405	3	KCNT2	1	196227521	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3198335	196227521	53023100	153	37201											
KCNT2	343450	broad.mit.edu	37	chr1	196285133	196285133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tattagcagcaaaagtcactCcacacctgagtaagtcatct	6	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196285133	A	A	196285133	3	1	21	1	0	0	0	0	1	0	0	0	8162	855	30	3	1067	3	KCNT2	1	196285133	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	57612	196285133	52965488	154	37202											
CFH	3075	broad.mit.edu	37	chr1	196654293	196654293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtaccagtgtagaaatgGtttttatcctgcaacccggg	10	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196654293	T	T	196654293	3	4	21	1	0	0	0	0	1	0	0	0	3313	1261	44	3	916	3	CFH	1	196654293	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	369160	196654293	52596328	155	37203											
ASPM	259266	broad.mit.edu	37	chr1	197091598	197091598	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaataccactgaaccagttTgcgtacattccacagtttga	6	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197091598	G	G	197091598	3	3	21	1	0	0	0	0	1	0	0	0	1060	1812	63	5	6975	5	ASPM	1	197091598	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	437305	197091598	52159023	156	37204											
FAM58B	339521	broad.mit.edu	37	chr1	200182769	200182769	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagggtgccgcagcgccGgcagccagggtgcacttccg	17	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200182769	T	T	200182769	2	4	21	1	0	0	0	0	0	0	0	1	5642	1103	39	1		1	FAM58B	1	200182769	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	3091171	200182769	49067852	157	37205											
FAM58B	339521	broad.mit.edu	37	chr1	200183300	200183300	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtggtgctctacctggcCctgcaggtctatggagtcga	15	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200183300	A	A	200183300	2	1	21	1	0	0	0	0	0	0	0	1	5642	610	22	2		2	FAM58B	1	200183300	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	531	200183300	49067321	158	37206											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200817728	200817728	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatactgaagtagacactGgaattcacgttccttcagaa	7	9	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200817728	T	T	200817728	4	4	21	1	0	0	0	0	0	1	0	0	2638	1349	47	2	1873	2	CAMSAP1L1	1	200817728	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	634428	200817728	48432893	159	37207											
KIF21B	23046	broad.mit.edu	37	chr1	200959110	200959110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagttgtctagcaggaggCgggcttcagccagggagcag	18	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200959110	A	A	200959110	3	1	21	1	0	0	0	0	1	0	0	0	8359	768	27	3	1838	3	KIF21B	1	200959110	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	141382	200959110	48291511	160	37208											
IGFN1	91156	broad.mit.edu	37	chr1	201185842	201185842	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgacctcagagggggctggcGaggccctggagtctgaggag	19	9	2	3	rs143611839		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201185842	A	A	201185842	3	1	21	1	0	0	0	0	1	0	0	0	7660	1059	37	4	9614	4	IGFN1	1	201185842	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	226732	201185842	48064779	161	37209											
PHLDA3	23612	broad.mit.edu	37	chr1	201437670	201437670	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggcagcggaagtcgatcTcgccgcccccttcggtcacc	14	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201437670	C	C	201437670	3	2	21	1	0	0	0	0	1	0	0	0	11945	1551	54	5	142	5	PHLDA3	1	201437670	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	251828	201437670	47812951	162	37210											
LGR6	59352	broad.mit.edu	37	chr1	202245499	202245499	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggggctgtcctccctccGccacctctggctggacgaca	12	16	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202245499	A	A	202245499	3	1	21	1	0	0	0	0	1	0	0	0	8830	1087	38	4	659	4	LGR6	1	202245499	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	807829	202245499	47005122	163	37211											
KDM5B	10765	broad.mit.edu	37	chr1	202777823	202777823	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgaagaagttaagtctGgtagaaaggatcagtcccat	11	8	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202777823	T	T	202777823	1	4	21	0	1	0	0	0	0	0	0	0	8204	1363	47	2		2	KDM5B	1	202777823	5'Flank	SNP	G	TCGA-05-4424-01A-22D-1855-08	532324	202777823	46472798	164	37212											
MYBPH	4608	broad.mit.edu	37	chr1	203138136	203138136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggtttccggatctctaGggtgcagacgccttgctcag	14	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203138136	T	T	203138136	3	4	21	1	0	0	0	0	1	0	0	0	10108	991	35	2	126	2	MYBPH	1	203138136	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	360313	203138136	46112485	165	37213											
ZC3H11A	9877	broad.mit.edu	37	chr1	203816441	203816441	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttcaaaaactgatgattCtacttcaggagcaagaagct	7	9	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203816441	T	T	203816441	3	4	21	1	0	0	0	0	1	0	0	0	17686	913	32	4	1214	4	ZC3H11A	1	203816441	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	678305	203816441	45434180	166	37214											
SLC26A9	115019	broad.mit.edu	37	chr1	205902067	205902067	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctggctgaaggagcccCttcaccttgtgggacctgga	14	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205902067	T	T	205902067	1	4	21	0	1	0	0	0	0	0	0	0	14638	696	24	4		4	SLC26A9	1	205902067	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2085626	205902067	43348554	167	37215											
IKBKE	9641	broad.mit.edu	37	chr1	206667311	206667311	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctcctggacaacaacCgcatcatcgaacggtaagga	9	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206667311	T	T	206667311	3	4	21	1	0	0	0	0	1	0	0	0	7682	652	23	4	2178	4	IKBKE	1	206667311	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	765244	206667311	42583310	168	37216											
CR1L	1379	broad.mit.edu	37	chr1	207896969	207896969	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttccttttaggttcacAtgatgctcttatagttggta	8	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207896969	C	C	207896969	3	2	21	1	0	0	0	0	1	0	0	0	3873	217	8	5	1695	5	CR1L	1	207896969	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1229658	207896969	41353652	169	37217											
PLXNA2	5362	broad.mit.edu	37	chr1	208234017	208234017	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccatgggaaaagggctggcCagggcggactcactgctcag	15	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	208234017	G	G	208234017	1	3	21	0	1	0	0	0	0	0	0	0	12215	609	21	4		4	PLXNA2	1	208234017	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	337048	208234017	41016604	170	37218											
CENPF	1063	broad.mit.edu	37	chr1	214781947	214781947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtgtccagctcgcgctgGctgtactggaagtcggcgcg	16	11	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214781947	A	A	214781947	1	1	21	0	1	0	0	0	0	0	0	0	3261	1218	42	4		4	CENPF	1	214781947	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	6547930	214781947	34468674	171	37219											
USH2A	7399	broad.mit.edu	37	chr1	215807775	215807775	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctagtccagtgatagggaaAtggggccacacctctacaaa	10	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215807775	G	G	215807775	1	3	21	0	1	0	0	0	0	0	0	0	17162	116	4	5		5	USH2A	1	215807775	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1025828	215807775	33442846	172	37220											
USH2A	7399	broad.mit.edu	37	chr1	215848726	215848726	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttgggttaacaggctcaGaccagctcagctcaacactg	9	12	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215848726	T	T	215848726	3	4	21	1	0	0	0	0	1	0	0	0	17162	942	33	3	3121	3	USH2A	1	215848726	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	40951	215848726	33401895	173	37221											
USH2A	7399	broad.mit.edu	37	chr1	215960039	215960039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtacgtgtttacactccCtgtatgaatggtttcttcgg	10	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215960039	A	A	215960039	3	1	21	1	0	0	0	0	1	0	0	0	17162	681	24	2	5332	2	USH2A	1	215960039	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	111313	215960039	33290582	174	37222											
USH2A	7399	broad.mit.edu	37	chr1	216051288	216051288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgagattaccaaaactcaGgctgttctgtggcatgtgcg	11	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216051288	T	T	216051288	1	4	21	0	1	0	0	0	0	0	0	0	17162	1015	35	2		2	USH2A	1	216051288	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	91249	216051288	33199333	175	37223											
USH2A	7399	broad.mit.edu	37	chr1	216251676	216251676	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagactggtatttaaccggAaggtcaatattccacttttc	7	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216251676	T	T	216251676	3	4	21	1	0	0	0	0	1	0	0	0	17162	246	9	5	10465	5	USH2A	1	216251676	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	200388	216251676	32998945	176	37224											
USH2A	7399	broad.mit.edu	37	chr1	216258133	216258133	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcttcagaactctgccaatCcagaggttcccaaatagctg	7	12	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216258133	G	G	216258133	3	3	21	1	0	0	0	0	1	0	0	0	17162	855	30	4	10726	4	USH2A	1	216258133	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	6457	216258133	32992488	177	37225											
USH2A	7399	broad.mit.edu	37	chr1	216371752	216371752	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catacttggtgtatggctccAagccagtgatggttgtcatt	11	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216371752	T	T	216371752	4	4	21	1	0	0	0	0	0	1	0	0	17162	131	5	5	11856	5	USH2A	1	216371752	Nonsense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	113619	216371752	32878869	178	37226											
ESRRG	2104	broad.mit.edu	37	chr1	216824132	216824132	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctaccttgtcccttcctgtCaatgtgaagtggttagccat	8	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216824132	A	A	216824132	1	1	21	0	1	0	0	0	0	0	0	0	5304	841	29	3		3	ESRRG	1	216824132	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	452380	216824132	32426489	179	37227											
EPRS	2058	broad.mit.edu	37	chr1	220152725	220152725	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatatggcttgtattttAtaaaatgagtgataaacagg	9	2	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220152725	T	T	220152725	1	4	21	0	1	0	0	0	0	0	0	0	5233	464	16	5		5	EPRS	1	220152725	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	3328593	220152725	29097896	180	37228											
EPRS	2058	broad.mit.edu	37	chr1	220184450	220184450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgatatcttatagagcgcCataagcaaaataaataatag	7	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220184450	A	A	220184450	1	1	21	0	1	0	0	0	0	0	0	0	5233	609	21	2		2	EPRS	1	220184450	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	31725	220184450	29066171	181	37229											
WDR26	80232	broad.mit.edu	37	chr1	224586245	224586245	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctacatttaacaaagctaatCggccattttttgaaatagta	5	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224586245	T	T	224586245	3	4	21	1	0	0	0	0	1	0	0	0	17410	884	31	4	385	4	WDR26	1	224586245	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4401795	224586245	24664376	182	37230											
CDC42BPA	8476	broad.mit.edu	37	chr1	227182456	227182456	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggccaatcccaaggtgGtgggattgcctgggaagatg	16	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227182456	A	A	227182456	1	1	21	0	1	0	0	0	0	0	0	0	3102	1276	44	4		4	CDC42BPA	1	227182456	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2596211	227182456	22068165	183	37231											
CDC42BPA	8476	broad.mit.edu	37	chr1	227381439	227381439	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaataggcctctgttgctaGatattacatggtaactcaca	8	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227381439	C	C	227381439	1	2	21	0	1	0	0	0	0	0	0	0	3102	957	33	4		4	CDC42BPA	1	227381439	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	198983	227381439	21869182	184	37232											
PRSS38	339501	broad.mit.edu	37	chr1	228003815	228003815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcggcccagcatggaggGgaaaatcctgggcggcgtcc	17	11	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228003815	T	T	228003815	3	4	21	1	0	0	0	0	1	0	0	0	12733	1232	43	2	179	2	PRSS38	1	228003815	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	622376	228003815	21246806	185	37233											
PRSS38	339501	broad.mit.edu	37	chr1	228003884	228003884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagcgtgcactacgcagGcctccacgtctgcggcggct	14	15	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228003884	T	T	228003884	3	4	21	1	0	0	0	0	1	0	0	0	12733	1203	42	3	248	3	PRSS38	1	228003884	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	69	228003884	21246737	186	37234											
OBSCN	84033	broad.mit.edu	37	chr1	228495862	228495862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgatgcggaggtgacggccGatgaggatgttgagttcagc	17	6	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228495862	T	T	228495862	3	4	21	1	0	0	0	0	1	0	0	0	10907	1058	37	3	12699	3	OBSCN	1	228495862	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	491978	228495862	20754759	187	37235											
TRIM11	81559	broad.mit.edu	37	chr1	228589735	228589735	+	Intron	DEL	C	-	-													gaccttcaccccctaccctgCcacccaggaccctgggagcc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	228589735	-	-	228589735	6	5	21	0	1	1	0	1	0	0	0	0	16611	754	26	0		0	TRIM11	1	228589735	Intron	DEL	C	TCGA-05-4424-01A-22D-1855-08	93873	228589735	20660886	188	37236											
TRIM17	51127	broad.mit.edu	37	chr1	228595873	228595873	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacaccttctgcagagccagGagcagtgcccgagtcccccg	11	17	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228595873	A	A	228595873	1	1	21	0	1	0	0	0	0	0	0	0	16617	1189	41	4		4	TRIM17	1	228595873	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	6138	228595873	20654748	189	37237											
URB2	9816	broad.mit.edu	37	chr1	229771856	229771856	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcccctccacggtactctCtgcatgcctcctggagctgc	11	17	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229771856	T	T	229771856	3	4	21	1	0	0	0	0	1	0	0	0	17151	913	32	4	1506	4	URB2	1	229771856	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1175983	229771856	19478765	190	37238											
GNPAT	8443	broad.mit.edu	37	chr1	231406679	231406679	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcttataggaaccagctGctcaacatttttgtgcgccc	8	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231406679	T	T	231406679	2	4	21	1	0	0	0	0	0	0	0	1	6605	1306	46	3		3	GNPAT	1	231406679	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1634823	231406679	17843942	191	37239											
IRF2BP2	359948	broad.mit.edu	37	chr1	234743041	234743041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgctgtttgatgctttGtctggagcaagggaagcaga	13	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234743041	T	T	234743041	3	4	21	1	0	0	0	0	1	0	0	0	7900	1386	48	3	161	3	IRF2BP2	1	234743041	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3336362	234743041	14507580	192	37240											
LYST	1130	broad.mit.edu	37	chr1	235969181	235969181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaatagctttgcttcctcGggagcggcttcagtagctga	12	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235969181	T	T	235969181	2	4	21	1	0	0	0	0	0	0	0	1	9216	1103	39	1		1	LYST	1	235969181	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1226140	235969181	13281440	193	37241											
LYST	1130	broad.mit.edu	37	chr1	235976294	235976294	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccttttcttcttggacaGgtatcttccataccagtgga	8	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235976294	A	A	235976294	3	1	21	1	0	0	0	0	1	0	0	0	9216	1000	35	4	11345	4	LYST	1	235976294	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	7113	235976294	13274327	194	37242											
ACTN2	88	broad.mit.edu	37	chr1	236889399	236889399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagtgtttgtgtgcaccCgtgttttcctcctgtctgag	11	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236889399	A	A	236889399	1	1	21	0	1	0	0	0	0	0	0	0	205	667	23	1		1	ACTN2	1	236889399	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	913105	236889399	12361222	195	37243											
RYR2	6262	broad.mit.edu	37	chr1	237608946	237608946	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatactgtttggtaagtcaGcagaaacgttaggaagtgtt	11	5	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237608946	A	A	237608946	1	1	21	0	1	0	0	0	0	0	0	0	13880	986	34	4		4	RYR2	1	237608946	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	719547	237608946	11641675	196	37244											
RYR2	6262	broad.mit.edu	37	chr1	237880516	237880516	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcagctgtttctgatcagGaaaggaagaaaatgaagcgc	13	6	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237880516	T	T	237880516	4	4	21	1	0	0	0	0	0	1	0	0	13880	1175	41	3	10628	3	RYR2	1	237880516	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	271570	237880516	11370105	197	37245											
RYR2	6262	broad.mit.edu	37	chr1	237906878	237906878	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtttattgctattttgcttCttgtcctcatccttccttaa	4	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237906878	A	A	237906878	1	1	21	0	1	0	0	0	0	0	0	0	13880	928	32	3		3	RYR2	1	237906878	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	26362	237906878	11343743	198	37246											
RYR2	6262	broad.mit.edu	37	chr1	237993983	237993983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtagacgccactggtcCctgcccatctcagaatagag	9	14	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237993983	A	A	237993983	1	1	21	0	1	0	0	0	0	0	0	0	13880	638	22	2		2	RYR2	1	237993983	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	87105	237993983	11256638	199	37247											
ZP4	57829	broad.mit.edu	37	chr1	238049056	238049056	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagccaagggggtcatacCtttggcaatctgaagttcca	10	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238049056	G	G	238049056	3	3	21	1	0	0	0	0	1	0	0	0	18347	695	24	4	676	4	ZP4	1	238049056	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	55073	238049056	11201565	200	37248											
FMN2	56776	broad.mit.edu	37	chr1	240306045	240306045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggaagaaactcctcagtGgccaattctgcccgttcccc	8	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240306045	T	T	240306045	1	4	21	0	1	0	0	0	0	0	0	0	6008	1363	47	2		2	FMN2	1	240306045	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2256989	240306045	8944576	201	37249											
RGS7	6000	broad.mit.edu	37	chr1	241094014	241094014	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaataatgagagatggcactGaccataatctgtgttttccg	9	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241094014	T	T	241094014	1	4	21	0	1	0	0	0	0	0	0	0	13419	1305	45	3		3	RGS7	1	241094014	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	787969	241094014	8156607	202	37250											
RGS7	6000	broad.mit.edu	37	chr1	241099998	241099998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaatgttcccaaatggaGcgcctccactgttttatgaa	7	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241099998	T	T	241099998	3	4	21	1	0	0	0	0	1	0	0	0	13419	971	34	3	1284	3	RGS7	1	241099998	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	5984	241099998	8150623	203	37251											
RGS7	6000	broad.mit.edu	37	chr1	241161741	241161741	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttattgaacacattataaaaGaggtttcgtcaaaaagacca	6	6	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241161741	C	C	241161741	1	2	21	0	1	0	0	0	0	0	0	0	13419	957	33	4		4	RGS7	1	241161741	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	61743	241161741	8088880	204	37252											
KMO	8564	broad.mit.edu	37	chr1	241731862	241731862	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgatatctgtaaagtgctCttcatttcactttaaatctc	4	9	5	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241731862	A	A	241731862	3	1	21	1	0	0	0	0	1	0	0	0	8495	913	32	3	910	3	KMO	1	241731862	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	570121	241731862	7518759	205	37253											
PLD5	200150	broad.mit.edu	37	chr1	242264009	242264009	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtcaccatgtacttgttgcGatttaacctaggaaaggtgt	10	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242264009	C	C	242264009	3	2	21	1	0	0	0	0	1	0	0	0	12144	1058	37	4	303	4	PLD5	1	242264009	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	532147	242264009	6986612	206	37254											
SDCCAG8	10806	broad.mit.edu	37	chr1	243419402	243419402	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcgctccccggccacagGcctgttgttctcggaaggga	15	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243419402	T	T	243419402	1	4	21	0	1	0	0	0	0	0	0	0	14072	1218	42	3		3	SDCCAG8	1	243419402	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	1155393	243419402	5831219	207	37255											
C1orf101	257044	broad.mit.edu	37	chr1	244716057	244716057	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggaattgtaaatcttcctGatggtggaattactggcatt	11	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244716057	T	T	244716057	3	4	21	1	0	0	0	0	1	0	0	0	1996	1290	45	3	1004	3	C1orf101	1	244716057	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1296655	244716057	4534564	208	37256											
EFCAB2	84288	broad.mit.edu	37	chr1	245180620	245180620	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagtcgaataatacagtGgatgtgaggtgtggaaatat	13	3	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245180620	T	T	245180620	2	4	21	1	0	0	0	0	0	0	0	1	4974	1335	47	2		2	EFCAB2	1	245180620	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	464563	245180620	4070001	209	37257											
KIF26B	55083	broad.mit.edu	37	chr1	245848964	245848964	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagactttgtccctatcgtGccagccctgcagaagacccg	9	16	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245848964	A	A	245848964	2	1	21	1	0	0	0	0	0	0	0	1	8365	1306	46	4		4	KIF26B	1	245848964	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	668344	245848964	3401657	210	37258											
VN1R5	317705	broad.mit.edu	37	chr1	247419370	247419370	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactaatgattccagatcatAgagatgttgaaattggttat	8	4	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247419370	G	G	247419370	1	3	21	0	1	0	0	0	0	0	0	0	17308	435	15	5		5	VN1R5	1	247419370	5'Flank	SNP	A	TCGA-05-4424-01A-22D-1855-08	1570406	247419370	1831251	211	37259											
OR2T33	391195	broad.mit.edu	37	chr1	248436683	248436683	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcacccaggagccaacacGacatggtcatcctcaggcac	9	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436683	T	T	248436683	4	4	21	1	0	0	0	0	0	1	0	0	11118	1059	37	3	531	3	OR2T33	1	248436683	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1017313	248436683	813938	212	37260											
OR2T34	127068	broad.mit.edu	37	chr1	248738024	248738024	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaaatcagtgcttgctGtttgattctgagaagtctga	13	5	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248738024	A	A	248738024	3	1	21	1	0	0	0	0	1	0	0	0	11119	1377	48	4	925	4	OR2T34	1	248738024	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	301341	248738024	512597	213	37261											
OR2T11	127077	broad.mit.edu	37	chr1	248789921	248789921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagaaaaaatggttgataCttcgggagccacagtaaggg	12	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248789921	A	A	248789921	3	1	21	1	0	0	0	0	1	0	0	0	11112	565	20	3	445	3	OR2T11	1	248789921	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	51897	248789921	460700	214	37262											
MYT1L	23040	broad.mit.edu	37	chr2	1926362	1926362	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcacagctggcaaacactctCgaccgggggctcaactgctc	11	15	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1926362	T	T	1926362	2	4	21	1	0	0	0	0	0	0	0	1	10201	871	31	4		4	MYT1L	2	1926362	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08		1926362	241273011	215	37263											
MYT1L	23040	broad.mit.edu	37	chr2	1926736	1926736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaacaccgtgtccttgggCtaatagtttaagggagtcca	10	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1926736	A	A	1926736	3	1	21	1	0	0	0	0	1	0	0	0	10201	797	28	3	2813	3	MYT1L	2	1926736	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	374	1926736	241272637	216	37264											
COLEC11	78989	broad.mit.edu	37	chr2	3652162	3652162	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggaaaagcacaaagccccaGcaaatctgcttaccccattg	7	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3652162	C	C	3652162	1	2	21	0	1	0	0	0	0	0	0	0	3743	986	34	4		4	COLEC11	2	3652162	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1725426	3652162	239547211	217	37265											
CMPK2	129607	broad.mit.edu	37	chr2	6990087	6990087	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccaggattctccatccgcTggtaggacatttctaccctg	9	13	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6990087	A	A	6990087	3	1	21	1	0	0	0	0	1	0	0	0	3613	1580	55	5	109	5	CMPK2	2	6990087	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	3337925	6990087	236209286	218	37266											
RNF144A	9781	broad.mit.edu	37	chr2	7154848	7154848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttcccttagattgaGtgcatggttgcagctgaaat	9	6	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7154848	T	T	7154848	3	4	21	1	0	0	0	0	1	0	0	0	13556	1020	36	3	256	3	RNF144A	2	7154848	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	164761	7154848	236044525	219	37267											
ID2	3398	broad.mit.edu	37	chr2	8822264	8822264	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcttcagggcagccagctCcctcccggtctcgccttccc	10	19	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8822264	T	T	8822264	1	4	21	0	1	0	0	0	0	0	0	0	7560	870	30	4		4	ID2	2	8822264	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	1667416	8822264	234377109	220	37268											
KIDINS220	57498	broad.mit.edu	37	chr2	8928836	8928836	+	Frame_Shift_Del	DEL	T	-	-													ggtggattcacaaacatcaaTttaaggaggagttccaaata							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8928836	-	-	8928836	7	5	21	1	0	1	0	1	0	0	0	0	8341	1490	52	0	3651	0	KIDINS220	2	8928836	Frame_Shift_Del	DEL	T	TCGA-05-4424-01A-22D-1855-08	106572	8928836	234270537	221	37269											
TAF1B	9014	broad.mit.edu	37	chr2	9991596	9991596	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcgcaatgtgtaaaacacAaattgtaactgtagtagcat	8	6	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9991596	G	G	9991596	1	3	21	0	1	0	0	0	0	0	0	0	15639	145	5	5		5	TAF1B	2	9991596	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1062760	9991596	233207777	222	37270											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10904613	10904613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcgggcaagagcctggGtagggcccccctgccaacag	15	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10904613	T	T	10904613	1	4	21	0	1	0	0	0	0	0	0	0	1185	1276	44	3		3	ATP6V1C2	2	10904613	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	913017	10904613	232294760	223	37271											
NBAS	51594	broad.mit.edu	37	chr2	15542243	15542243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaacgtttttgttttaaCtgttagaataaaaaaacaca	5	5	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15542243	A	A	15542243	1	1	21	0	1	0	0	0	0	0	0	0	10280	580	20	3		3	NBAS	2	15542243	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4637630	15542243	227657130	224	37272											
SDC1	6382	broad.mit.edu	37	chr2	20405078	20405078	+	Intron	DEL	G	-	-													gacctgttgccgtcttgggtGgggggggcccccatgacaac					rs74334882	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20405078	-	-	20405078	6	5	21	0	1	1	0	1	0	0	0	0	14064	1363	47	0		0	SDC1	2	20405078	Intron	DEL	G	TCGA-05-4424-01A-22D-1855-08	4862835	20405078	222794295	225	37273											
APOB	338	broad.mit.edu	37	chr2	21234901	21234901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagtgatccagaaagcagGctgaagaacctcaatgactc	9	9	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21234901	T	T	21234901	3	4	21	1	0	0	0	0	1	0	0	0	787	1194	42	3	8868	3	APOB	2	21234901	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	829823	21234901	221964472	226	37274											
ATAD2B	54454	broad.mit.edu	37	chr2	23977766	23977766	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgaggaagggtgtattcTtaagtgattttttttaaagc	11	2	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23977766	C	C	23977766	1	2	21	0	1	0	0	0	0	0	0	0	1076	1624	56	5		5	ATAD2B	2	23977766	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2742865	23977766	219221607	227	37275											
ASXL2	55252	broad.mit.edu	37	chr2	25991576	25991576	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cataaaaatactaggaaaaaGaaacttccattgaaaaactg	5	6	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25991576	C	C	25991576	1	2	21	0	1	0	0	0	0	0	0	0	1071	957	33	4		4	ASXL2	2	25991576	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2013810	25991576	217207797	228	37276											
KIF3C	3797	broad.mit.edu	37	chr2	26203366	26203368	+	In_Frame_Del	DEL	GCT	-	-													ggctgcggtcatcctggatgGctgccttctcctcctccagc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26203368	-	-	26203366	7	5	21	1	0	1	0	1	0	0	0	0	8372	1203	42	0	992	0	KIF3C	2	26203366	In_Frame_Del	DEL	GCT	TCGA-05-4424-01A-22D-1855-08	211790	26203366	216996007	229	37277											
OTOF	9381	broad.mit.edu	37	chr2	26695258	26695258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacaatcaagctcagccCccgacagtcacatgccaaag	6	16	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26695258	A	A	26695258	1	1	21	0	1	0	0	0	0	0	0	0	11397	638	22	2		2	OTOF	2	26695258	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	491892	26695258	216504115	230	37278											
CAD	790	broad.mit.edu	37	chr2	27446822	27446822	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaccaagctggcccttcaGatatggaactgcttttcgat	9	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27446822	T	T	27446822	3	4	21	1	0	0	0	0	1	0	0	0	2591	942	33	3	1063	3	CAD	2	27446822	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	751564	27446822	215752551	231	37279											
IFT172	26160	broad.mit.edu	37	chr2	27708432	27708432	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaatgccaaaagcatttcTagcttcattaattctagtgt	6	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27708432	C	C	27708432	1	2	21	0	1	0	0	0	0	0	0	0	7627	1537	53	5		5	IFT172	2	27708432	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	261610	27708432	215490941	232	37280											
C2orf16	84226	broad.mit.edu	37	chr2	27803250	27803250	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagtgactctgaaagcactCagaatgaaaaacgggctaaa	10	7	2	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27803250	G	G	27803250	3	3	21	1	0	0	0	0	1	0	0	0	2179	827	29	4	3813	4	C2orf16	2	27803250	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	94818	27803250	215396123	233	37281											
C2orf16	84226	broad.mit.edu	37	chr2	27805001	27805001	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctcagagaagagccacctCagtcccttggaaagaagccg	10	14	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27805001	G	G	27805001	2	3	21	1	0	0	0	0	0	0	0	1	2179	813	29	4		4	C2orf16	2	27805001	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1751	27805001	215394372	234	37282											
XDH	7498	broad.mit.edu	37	chr2	31605971	31605971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagcaacagcatccaccaGggttttttccacaatgctca	6	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31605971	T	T	31605971	3	4	21	1	0	0	0	0	1	0	0	0	17553	991	35	2	3171	2	XDH	2	31605971	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3800970	31605971	211593402	235	37283											
CRIM1	51232	broad.mit.edu	37	chr2	36744595	36744595	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtgcacctgccacagcGgacgggtgctgtgtgagaca	14	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36744595	A	A	36744595	3	1	21	1	0	0	0	0	1	0	0	0	3905	1117	39	4	2162	4	CRIM1	2	36744595	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	5138624	36744595	206454778	236	37284											
CDKL4	344387	broad.mit.edu	37	chr2	39414835	39414835	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttaaagattgattgatgtCttgggattaattttcctgta	8	3	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39414835	A	A	39414835	3	1	21	1	0	0	0	0	1	0	0	0	3186	913	32	3	291	3	CDKL4	2	39414835	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2670240	39414835	203784538	237	37285											
ABCG8	64241	broad.mit.edu	37	chr2	44080051	44080051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggccctggcacacagggcCtccccgatgcttaaaccctg	11	16	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44080051	T	T	44080051	1	4	21	0	1	0	0	0	0	0	0	0	72	696	24	4		4	ABCG8	2	44080051	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4665216	44080051	199119322	238	37286											
SRBD1	55133	broad.mit.edu	37	chr2	45619977	45619977	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttctcatgtataaaatggGagaataatatccattctgct	6	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45619977	A	A	45619977	1	1	21	0	1	0	0	0	0	0	0	0	15251	1189	41	4		4	SRBD1	2	45619977	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1539926	45619977	197579396	239	37287											
MSH2	4436	broad.mit.edu	37	chr2	47698047	47698047	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatatgtttcacgtagtacaCattgcttctagtacacattt	6	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47698047	T	T	47698047	1	4	21	0	1	0	0	0	0	0	0	0	9964	493	17	4		4	MSH2	2	47698047	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2078070	47698047	195501326	240	37288											
MSH2	4436	broad.mit.edu	37	chr2	47748974	47748974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagggcagggtcagcgcGgtcctggccgcgcaggtggt	19	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47748974	T	T	47748974	1	4	21	0	1	0	0	0	0	0	0	0	9964	1131	39	1		1	MSH2	2	47748974	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	50927	47748974	195450399	241	37289											
FBXO11	80204	broad.mit.edu	37	chr2	48045893	48045893	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcctaactccctcccaaaaGatagccaaatatgaaaacat	3	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48045893	C	C	48045893	1	2	21	0	1	0	0	0	0	0	0	0	5784	957	33	4		4	FBXO11	2	48045893	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	296919	48045893	195153480	242	37290											
NRXN1	9378	broad.mit.edu	37	chr2	50847353	50847353	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacagggaaaggacacgcTatactcagacctagatactg	10	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50847353	C	C	50847353	1	2	21	0	1	0	0	0	0	0	0	0	10760	1537	53	5		5	NRXN1	2	50847353	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2801460	50847353	192352020	243	37291											
ASB3	51130	broad.mit.edu	37	chr2	53927317	53927317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcaaaacacagataccCttctccaaacactgggatct	5	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53927317	A	A	53927317	1	1	21	0	1	0	0	0	0	0	0	0	1028	696	24	2		2	ASB3	2	53927317	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3079964	53927317	189272056	244	37292											
PSME4	23198	broad.mit.edu	37	chr2	54122796	54122796	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttttagttcttggtaTagttttgctgtcataatgca	7	5	3	0	rs139295214		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54122796	C	C	54122796	3	2	21	1	0	0	0	0	1	0	0	0	12815	1406	49	5	1821	5	PSME4	2	54122796	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	195479	54122796	189076577	245	37293											
SPTBN1	6711	broad.mit.edu	37	chr2	54876661	54876661	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattggctacatcttgcttaGaggcagtttctttccaaagg	9	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54876661	T	T	54876661	1	4	21	0	1	0	0	0	0	0	0	0	15237	957	33	3		3	SPTBN1	2	54876661	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	753865	54876661	188322712	246	37294											
RPS27A	6233	broad.mit.edu	37	chr2	55462538	55462538	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaatgtgttgtaaaattatCttaacagcaggtttgtgctt	9	4	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55462538	G	G	55462538	1	3	21	0	1	0	0	0	0	0	0	0	13750	928	32	4		4	RPS27A	2	55462538	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	585877	55462538	187736835	247	37295											
KIAA1841	84542	broad.mit.edu	37	chr2	61304276	61304276	+	Frame_Shift_Del	DEL	G	-	-													cactaaggagaataaagattGtgagatgcccactttaggta							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61304276	-	-	61304276	7	5	21	1	0	1	0	1	0	0	0	0	8331	1377	48	0	667	0	KIAA1841	2	61304276	Frame_Shift_Del	DEL	G	TCGA-05-4424-01A-22D-1855-08	5841738	61304276	181895097	248	37296											
USP34	9736	broad.mit.edu	37	chr2	61441511	61441511	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttgtagctattgctggcTcagaaagtttaggctggaaa	12	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61441511	A	A	61441511	3	1	21	1	0	0	0	0	1	0	0	0	17192	1551	54	5	2326	5	USP34	2	61441511	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	137235	61441511	181757862	249	37297											
XPO1	7514	broad.mit.edu	37	chr2	61721218	61721218	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagataccaacaacatataAtgaagggcctacacagaaga	7	9	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61721218	C	C	61721218	3	2	21	1	0	0	0	0	1	0	0	0	17572	98	4	5	2215	5	XPO1	2	61721218	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	279707	61721218	181478155	250	37298											
COMMD1	150684	broad.mit.edu	37	chr2	62363161	62363161	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctaagaaaattcttgtGcccgcattggtattaaatcc	6	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62363161	T	T	62363161	1	4	21	0	1	0	0	0	0	0	0	0	3746	1334	46	3		3	COMMD1	2	62363161	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	641943	62363161	180836212	251	37299											
AFTPH	54812	broad.mit.edu	37	chr2	64778627	64778627	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caatggagccagacatcattCgaatgtactcttcatcccca	6	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64778627	T	T	64778627	4	4	21	1	0	0	0	0	0	1	0	0	364	876	31	4	21	4	AFTPH	2	64778627	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2415466	64778627	178420746	252	37300											
PLEK	5341	broad.mit.edu	37	chr2	68607891	68607891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacgaccaaacagcaggacCacttcttccaggcagccttc	7	16	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68607891	A	A	68607891	3	1	21	1	0	0	0	0	1	0	0	0	12148	594	21	2	245	2	PLEK	2	68607891	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3829264	68607891	174591482	253	37301											
APLF	200558	broad.mit.edu	37	chr2	68753906	68753906	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcggctcactgcaacctccAcctcctgggttcaagccatt	7	17	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68753906	C	C	68753906	1	2	21	0	1	0	0	0	0	0	0	0	778	174	6	5		5	APLF	2	68753906	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	146015	68753906	174445467	254	37302											
PAIP2B	400961	broad.mit.edu	37	chr2	71429602	71429602	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtctgttgaaatcctcttCattctccatccacatgtact	4	13	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71429602	A	A	71429602	4	1	21	1	0	0	0	0	0	1	0	0	11492	835	29	3	265	3	PAIP2B	2	71429602	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2675696	71429602	171769771	255	37303											
DYSF	8291	broad.mit.edu	37	chr2	71797199	71797199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgctttgatttccaaagGgaaagtgtggggtgcagtgg	15	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71797199	T	T	71797199	1	4	21	0	1	0	0	0	0	0	0	0	4899	1247	43	2		2	DYSF	2	71797199	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	367597	71797199	171402174	256	37304											
DYSF	8291	broad.mit.edu	37	chr2	71829926	71829926	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcaggagacatcaaggatCctggatgaggtgagctgggc	17	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71829926	T	T	71829926	2	4	21	1	0	0	0	0	0	0	0	1	4899	845	30	4		4	DYSF	2	71829926	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	32727	71829926	171369447	257	37305											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73315269	73315269	+	Frame_Shift_Del	DEL	C	-	-													ggatgagtgatgtggggaggCccccaggatgggacccccct							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73315269	-	-	73315269	7	5	21	1	0	1	0	1	0	0	0	0	13005	739	26	0	496	0	RAB11FIP5	2	73315269	Frame_Shift_Del	DEL	C	TCGA-05-4424-01A-22D-1855-08	1485343	73315269	169884104	258	37306											
MRPL53	116540	broad.mit.edu	37	chr2	74699773	74699773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgcagaccaagccgagcCaaggcagctgccatggtgac	14	14	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74699773	A	A	74699773	3	1	21	1	0	0	0	0	1	0	0	0	9911	593	21	2	335	2	MRPL53	2	74699773	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1384504	74699773	168499600	259	37307											
DQX1	165545	broad.mit.edu	37	chr2	74750592	74750592	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgggtgaaggggcagtaCtcgtggtggaagcccttgga	18	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74750592	T	T	74750592	3	4	21	1	0	0	0	0	1	0	0	0	4791	565	20	4	1296	4	DQX1	2	74750592	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	50819	74750592	168448781	260	37308											
REG3G	130120	broad.mit.edu	37	chr2	79255376	79255376	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataactgtgatgcaaagttaCcctatgtctgcaagttcaag	8	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79255376	T	T	79255376	3	4	21	1	0	0	0	0	1	0	0	0	13321	507	18	4	520	4	REG3G	2	79255376	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4504784	79255376	163943997	261	37309											
REG1A	5967	broad.mit.edu	37	chr2	79348489	79348489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggagacttgtttctttGgcctattcattctgtttttt	7	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79348489	T	T	79348489	1	4	21	0	1	0	0	0	0	0	0	0	13318	1363	47	2		2	REG1A	2	79348489	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	93113	79348489	163850884	262	37310											
REG1A	5967	broad.mit.edu	37	chr2	79349013	79349013	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgacagcatcatcacggaCattactctgctgtccttttt	7	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79349013	T	T	79349013	1	4	21	0	1	0	0	0	0	0	0	0	13318	493	17	4		4	REG1A	2	79349013	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	524	79349013	163850360	263	37311											
CTNNA2	1496	broad.mit.edu	37	chr2	80333354	80333354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagtaggcttctccctgGgtttggaggttagtatggta	15	6	1	0	rs150715083	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80333354	T	T	80333354	1	4	21	0	1	0	0	0	0	0	0	0	4047	1247	43	2		2	CTNNA2	2	80333354	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	984341	80333354	162866019	264	37312											
CTNNA2	1496	broad.mit.edu	37	chr2	80874660	80874661	+	Intron	INS	-	T	T													gtacatcaccattttgtgaaINStttggggcctccattaaccc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80874661	T	T	80874660	6	5	21	0	1	1	1	0	0	0	0	0	4047	116	4	0		0	CTNNA2	2	80874660	Intron	INS	-	TCGA-05-4424-01A-22D-1855-08	541306	80874660	162324713	265	37313											
PROM2	150696	broad.mit.edu	37	chr2	95953846	95953846	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtgcggtggccccaatGgtgtccccaggcctttctgt	13	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95953846	C	C	95953846	1	2	21	0	1	0	0	0	0	0	0	0	12662	1363	47	4		4	PROM2	2	95953846	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	15079186	95953846	147245527	266	37314											
KIAA1310	55683	broad.mit.edu	37	chr2	97275400	97275400	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttgtttattttctagccCcagaaggagggccatgttag	13	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97275400	A	A	97275400	1	1	21	0	1	0	0	0	0	0	0	0	8292	638	22	2		2	KIAA1310	2	97275400	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1321554	97275400	145923973	267	37315											
ANKRD36	375248	broad.mit.edu	37	chr2	97779728	97779728	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcctgtggatgtggagaagTacccctttccaggctgaggg	16	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97779728	A	A	97779728	1	1	21	0	1	0	0	0	0	0	0	0	665	1653	57	5		5	ANKRD36	2	97779728	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	504328	97779728	145419645	268	37316											
ANKRD36B	57730	broad.mit.edu	37	chr2	98175325	98175325	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaacagaatctttctcgtCacttgtagcctgaatgggat	9	8	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98175325	G	G	98175325	3	3	21	1	0	0	0	0	1	0	0	0	666	826	29	4	3293	4	ANKRD36B	2	98175325	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	395597	98175325	145024048	269	37317											
ANKRD36B	57730	broad.mit.edu	37	chr2	98175380	98175380	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaatatgtaaagtaggtttCatagactatacggttaatag	8	4	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98175380	T	T	98175380	1	4	21	0	1	0	0	0	0	0	0	0	666	841	29	4		4	ANKRD36B	2	98175380	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	55	98175380	145023993	270	37318											
ANKRD36B	57730	broad.mit.edu	37	chr2	98177269	98177269	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agactatacagttaatagttCaacatataaatgagacttta	5	5	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98177269	G	G	98177269	1	3	21	0	1	0	0	0	0	0	0	0	666	841	29	4		4	ANKRD36B	2	98177269	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1889	98177269	145022104	271	37319											
ZAP70	7535	broad.mit.edu	37	chr2	98349495	98349495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctggcaggtaggctgccCgtgcaacttgttctgggaga	15	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98349495	T	T	98349495	1	4	21	0	1	0	0	0	0	0	0	0	17641	667	23	4		4	ZAP70	2	98349495	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	172226	98349495	144849878	272	37320											
SLC9A2	6549	broad.mit.edu	37	chr2	103299662	103299662	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagctcttaagtgctatctcTtgcattctgattaagatcat	6	8	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103299662	C	C	103299662	1	2	21	0	1	0	0	0	0	0	0	0	14826	1624	56	5		5	SLC9A2	2	103299662	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	4950167	103299662	139899711	273	37321											
TMEM182	130827	broad.mit.edu	37	chr2	103414427	103414427	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcgccagccattttctctAcaaagctgggggaggctcat	10	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103414427	T	T	103414427	3	4	21	1	0	0	0	0	1	0	0	0	16224	391	14	5	451	5	TMEM182	2	103414427	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	114765	103414427	139784946	274	37322											
RGPD3	653489	broad.mit.edu	37	chr2	107084626	107084626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggccgggtcgaggccGccgcccggccaggtcgaggc	19	17	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107084626	T	T	107084626	1	4	21	0	1	0	0	0	0	0	0	0	13395	1102	38	3		3	RGPD3	2	107084626	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3670199	107084626	136114747	275	37323											
NPHP1	4867	broad.mit.edu	37	chr2	110937164	110937164	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaaaatacttgtataggaaGagatgttttaataatgtgat	8	1	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110937164	C	C	110937164	1	2	21	0	1	0	0	0	0	0	0	0	10674	957	33	4		4	NPHP1	2	110937164	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3852538	110937164	132262209	276	37324											
ACOXL	55289	broad.mit.edu	37	chr2	111559375	111559375	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagttggcttgggtcttGggtctcatgggctgcatgtc	14	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111559375	C	C	111559375	1	2	21	0	1	0	0	0	0	0	0	0	161	1363	47	4		4	ACOXL	2	111559375	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	622211	111559375	131639998	277	37325											
POLR1B	84172	broad.mit.edu	37	chr2	113305054	113305055	+	Frame_Shift_Ins	INS	-	G	G													gaatcattaagcagtttcttINSggctatgttcccatcatggt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113305055	G	G	113305054	7	5	21	1	0	1	1	0	0	0	0	0	12305	1799	63	0	412	0	POLR1B	2	113305054	Frame_Shift_Ins	INS	-	TCGA-05-4424-01A-22D-1855-08	1745679	113305054	129894319	278	37326											
DPP10	57628	broad.mit.edu	37	chr2	116226052	116226052	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggcatcttttattaacctGcttactattgctctgtgtta	7	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116226052	C	C	116226052	1	2	21	0	1	0	0	0	0	0	0	0	4767	1334	46	4		4	DPP10	2	116226052	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2920998	116226052	126973321	279	37327											
MARCO	8685	broad.mit.edu	37	chr2	119752128	119752128	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcacttctctgctcccgaGgtgtcctcgggctcatatgt	9	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119752128	T	T	119752128	1	4	21	0	1	0	0	0	0	0	0	0	9403	1015	35	2		2	MARCO	2	119752128	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	3526076	119752128	123447245	280	37328											
GLI2	2736	broad.mit.edu	37	chr2	121745675	121745675	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatctcctgagtgcgctgTgttgcaagccctcttctcgg	11	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121745675	C	C	121745675	1	2	21	0	1	0	0	0	0	0	0	0	6502	1711	59	5		5	GLI2	2	121745675	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	1993547	121745675	121453698	281	37329											
CLASP1	23332	broad.mit.edu	37	chr2	122106166	122106166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcgacgactttggtctgCatcttgatggcagcaaggtt	11	10	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122106166	A	A	122106166	3	1	21	1	0	0	0	0	1	0	0	0	3485	710	25	3	293	3	CLASP1	2	122106166	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	360491	122106166	121093207	282	37330											
UGGT1	56886	broad.mit.edu	37	chr2	128936041	128936041	+	Splice_Site	DEL	G	-	-													tttttacccttattgttataGgggctttacaggacagaaga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128936041	-	-	128936041	8	5	21	1	0	1	0	1	0	0	1	0	17067	1014	35	0	3847	0	UGGT1	2	128936041	Splice_Site	DEL	G	TCGA-05-4424-01A-22D-1855-08	6829875	128936041	114263332	283	37331											
SMPD4	55627	broad.mit.edu	37	chr2	130930350	130930350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccctacctcagggccacCaaaggatactcagggccaag	9	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130930350	A	A	130930350	1	1	21	0	1	0	0	0	0	0	0	0	14921	609	21	2		2	SMPD4	2	130930350	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1994309	130930350	112269023	284	37332											
TUBA3D	113457	broad.mit.edu	37	chr2	132235960	132235960	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggagcccactgtggtcgGtaggtgcctgggcactggat	16	11	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132235960	A	A	132235960	5	1	21	1	0	0	0	0	0	0	1	0	16873	1275	44	4	233	4	TUBA3D	2	132235960	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	1305610	132235960	110963413	285	37333											
NCKAP5	344148	broad.mit.edu	37	chr2	133668778	133668778	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctttcaagaaacaaattGctggtcatttcagactcacg	7	9	5	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133668778	A	A	133668778	1	1	21	0	1	0	0	0	0	0	0	0	10318	1334	46	4		4	NCKAP5	2	133668778	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1432818	133668778	109530595	286	37334											
MGAT5	4249	broad.mit.edu	37	chr2	135206206	135206206	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaccaacacttgtgcctttCtcttcctcttcaggtacaag	5	14	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135206206	G	G	135206206	1	3	21	0	1	0	0	0	0	0	0	0	9641	928	32	4		4	MGAT5	2	135206206	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1537428	135206206	107993167	287	37335											
ZRANB3	84083	broad.mit.edu	37	chr2	135965138	135965138	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acacacaccatgttcagtttCaaatactttggctctcaggt	6	11	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135965138	G	G	135965138	3	3	21	1	0	0	0	0	1	0	0	0	18353	835	29	4	376	4	ZRANB3	2	135965138	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	758932	135965138	107234235	288	37336											
ZRANB3	84083	broad.mit.edu	37	chr2	135975243	135975243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttcctttgaatgtgagcCtatttacaacatcagaaaac	5	9	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135975243	A	A	135975243	1	1	21	0	1	0	0	0	0	0	0	0	18353	696	24	2		2	ZRANB3	2	135975243	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	10105	135975243	107224130	289	37337											
LRP1B	53353	broad.mit.edu	37	chr2	141215131	141215131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgatgttttatgggcacGgctgagtgacttggttttcc	12	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141215131	T	T	141215131	3	4	21	1	0	0	0	0	1	0	0	0	9042	1116	39	1	4208	1	LRP1B	2	141215131	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	5239888	141215131	101984242	290	37338											
LRP1B	53353	broad.mit.edu	37	chr2	141232926	141232926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaggaaagaaaatcaataCtgattttgtttacagattct	6	5	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141232926	A	A	141232926	1	1	21	0	1	0	0	0	0	0	0	0	9042	580	20	3		3	LRP1B	2	141232926	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	17795	141232926	101966447	291	37339											
LRP1B	53353	broad.mit.edu	37	chr2	141609221	141609221	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaactgtaagaaatttacCatagcaggtcttcttgtctg	8	7	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141609221	A	A	141609221	4	1	21	1	0	0	0	0	0	1	0	0	9042	608	21	2	9344	2	LRP1B	2	141609221	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	376295	141609221	101590152	292	37340											
LRP1B	53353	broad.mit.edu	37	chr2	141762977	141762977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccggcctcctgggatagcCaagcaaagtgtactacagcc	10	14	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141762977	A	A	141762977	3	1	21	1	0	0	0	0	1	0	0	0	9042	593	21	2	11677	2	LRP1B	2	141762977	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	153756	141762977	101436396	293	37341											
LRP1B	53353	broad.mit.edu	37	chr2	141816619	141816619	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagttataccataaagatgtCtaacctataaagagggcaaa	7	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141816619	T	T	141816619	3	4	21	1	0	0	0	0	1	0	0	0	9042	913	32	4	12890	4	LRP1B	2	141816619	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	53642	141816619	101382754	294	37342											
KYNU	8942	broad.mit.edu	37	chr2	143718265	143718265	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactcaattgcagtgatcCtgttcagtggggtgcatttt	12	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143718265	T	T	143718265	2	4	21	1	0	0	0	0	0	0	0	1	8659	680	24	4		4	KYNU	2	143718265	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1901646	143718265	99481108	295	37343											
ARHGAP15	55843	broad.mit.edu	37	chr2	143959823	143959823	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgatacaaaataaattgcCacaaaactcagcaacttaga	4	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143959823	T	T	143959823	1	4	21	0	1	0	0	0	0	0	0	0	868	609	21	4		4	ARHGAP15	2	143959823	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	241558	143959823	99239550	296	37344											
GTDC1	79712	broad.mit.edu	37	chr2	144714812	144714812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagatgacaacatcagcCatgcacagtacttggaaata	9	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144714812	A	A	144714812	3	1	21	1	0	0	0	0	1	0	0	0	6916	594	21	2	312	2	GTDC1	2	144714812	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	754989	144714812	98484561	297	37345											
GALNT13	114805	broad.mit.edu	37	chr2	154996906	154996906	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggaaaagctgtgttgattCctaaagatgaccaggagaaa	12	5	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154996906	T	T	154996906	3	4	21	1	0	0	0	0	1	0	0	0	6273	855	30	4	205	4	GALNT13	2	154996906	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	10282094	154996906	88202467	298	37346											
GALNT13	114805	broad.mit.edu	37	chr2	155098649	155098649	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaactgtttacagtgtgataAatcgttccccacactatcta	6	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155098649	T	T	155098649	3	4	21	1	0	0	0	0	1	0	0	0	6273	14	1	5	428	5	GALNT13	2	155098649	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	101743	155098649	88100724	299	37347											
PKP4	8502	broad.mit.edu	37	chr2	159519520	159519520	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggatgacttactaggaaaaGagtctcccagcaaagactct	9	9	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159519520	C	C	159519520	3	2	21	1	0	0	0	0	1	0	0	0	12082	943	33	4	2373	4	PKP4	2	159519520	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4420871	159519520	83679853	300	37348											
BAZ2B	29994	broad.mit.edu	37	chr2	160240093	160240093	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaagaaaacagtacatTaactttaataaaacaggact	5	5	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160240093	A	A	160240093	1	1	21	0	1	0	0	0	0	0	0	0	1337	1769	61	5		5	BAZ2B	2	160240093	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	720573	160240093	82959280	301	37349											
FAP	2191	broad.mit.edu	37	chr2	163066509	163066509	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctatatgctcctgggtctAaaagacaaaagatcacatcg	7	9	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163066509	T	T	163066509	1	4	21	0	1	0	0	0	0	0	0	0	5730	377	13	5		5	FAP	2	163066509	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2826416	163066509	80132864	302	37350											
TTC21B	79809	broad.mit.edu	37	chr2	166767876	166767876	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctgaagaactttttctgCtttgtcataccatttcaatt	5	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166767876	T	T	166767876	3	4	21	1	0	0	0	0	1	0	0	0	16814	797	28	4	1576	4	TTC21B	2	166767876	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3701367	166767876	76431497	303	37351											
XIRP2	129446	broad.mit.edu	37	chr2	168100183	168100183	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaaaactgttcacagagaaGacgttgaaaagggagatgta	11	4	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168100183	A	A	168100183	3	1	21	1	0	0	0	0	1	0	0	0	17557	942	33	4	2311	4	XIRP2	2	168100183	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1332307	168100183	75099190	304	37352											
ABCB11	8647	broad.mit.edu	37	chr2	169792946	169792946	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatctgagagccggcagcctGcaaaccaaaaagcaatcaac	9	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169792946	C	C	169792946	1	2	21	0	1	0	0	0	0	0	0	0	42	1334	46	4		4	ABCB11	2	169792946	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1692763	169792946	73406427	305	37353											
LRP2	4036	broad.mit.edu	37	chr2	170092556	170092556	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgagggtggtggccccagtCagaccagaacagtagatgct	15	10	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170092556	A	A	170092556	3	1	21	1	0	0	0	0	1	0	0	0	9043	826	29	3	9457	3	LRP2	2	170092556	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	299610	170092556	73106817	306	37354											
C2orf77	129881	broad.mit.edu	37	chr2	170506009	170506009	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctggggtggttcccatgCggccagtttactttggtttt	12	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170506009	T	T	170506009	1	4	21	0	1	0	0	0	0	0	0	0	2216	783	27	4		4	C2orf77	2	170506009	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	413453	170506009	72693364	307	37355											
MYO3B	140469	broad.mit.edu	37	chr2	171092687	171092687	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgactcattagttctttgTgaaagcgtctggttagaggg	12	6	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171092687	A	A	171092687	1	1	21	0	1	0	0	0	0	0	0	0	10171	1711	59	5		5	MYO3B	2	171092687	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	586678	171092687	72106686	308	37356											
TLK1	9874	broad.mit.edu	37	chr2	172016919	172016919	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggcccctccaaacttccaCtgctactttggacactcatc	6	17	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172016919	G	G	172016919	3	3	21	1	0	0	0	0	1	0	0	0	16066	565	20	4	2410	4	TLK1	2	172016919	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	924232	172016919	71182454	309	37357											
DCAF17	80067	broad.mit.edu	37	chr2	172334560	172334560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaaagttttaaccttctgGatgatgacccagaacaagag	8	7	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172334560	T	T	172334560	3	4	21	1	0	0	0	0	1	0	0	0	4302	1174	41	3	1292	3	DCAF17	2	172334560	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	317641	172334560	70864813	310	37358											
SLC25A12	8604	broad.mit.edu	37	chr2	172644379	172644379	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatgacaccactgtatgtcGtctggccagcgcgggcagcc	13	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172644379	A	A	172644379	3	1	21	1	0	0	0	0	1	0	0	0	14588	1145	40	4	384	4	SLC25A12	2	172644379	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	309819	172644379	70554994	311	37359											
MAP1D	254042	broad.mit.edu	37	chr2	172930254	172930254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagtctcacatggaagtaCtgttgctatagcatagttga	9	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172930254	A	A	172930254	1	1	21	0	1	0	0	0	0	0	0	0	9321	580	20	3		3	MAP1D	2	172930254	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	285875	172930254	70269119	312	37360											
HOXD3	3232	broad.mit.edu	37	chr2	177036321	177036321	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatacacgagcgcgcagctGgtggaattggaaaaggaatt	14	7	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177036321	T	T	177036321	2	4	21	1	0	0	0	0	0	0	0	1	7390	1335	47	2		2	HOXD3	2	177036321	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	4106067	177036321	66163052	313	37361											
HNRNPA3	220988	broad.mit.edu	37	chr2	178081436	178081436	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatctggcaattttatgggtCgcggagggaactttggaggt	16	5	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178081436	T	T	178081436	3	4	21	1	0	0	0	0	1	0	0	0	7327	884	31	4	698	4	HNRNPA3	2	178081436	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1045115	178081436	65117937	314	37362											
AGPS	8540	broad.mit.edu	37	chr2	178307022	178307022	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttgcaaagtattaatagGtatcacttttctagtggccc	7	7	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178307022	A	A	178307022	1	1	21	0	1	0	0	0	0	0	0	0	394	1276	44	4		4	AGPS	2	178307022	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	225586	178307022	64892351	315	37363											
PDE11A	50940	broad.mit.edu	37	chr2	178704964	178704965	+	Intron	DNP	GG	TT	TT													aacttaggattgcaaccagaGgggctcctcttacctctgca							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	178704965	TT	TT	178704964	1	4	21	0	1	0	0	0	0	0	0	0	11725	1015	35	2		2	PDE11A	2	178704964	Intron	DNP	GG	TCGA-05-4424-01A-22D-1855-08	397942	178704964	64494409	316	37364											
DFNB59	494513	broad.mit.edu	37	chr2	179325639	179325639	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggattcacatatttattAatgctgtttgcattatgtat	7	4	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179325639	T	T	179325639	1	4	21	0	1	0	0	0	0	0	0	0	4496	377	13	5		5	DFNB59	2	179325639	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	620675	179325639	63873734	317	37365											
TTN	7273	broad.mit.edu	37	chr2	179411926	179411926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcttctcaacccagtaGccaatgattttactgccacc	4	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179411926	T	T	179411926	2	4	21	1	0	0	0	0	0	0	0	1	16861	958	34	3		3	TTN	2	179411926	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	86287	179411926	63787447	318	37366											
TTN	7273	broad.mit.edu	37	chr2	179463212	179463212	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttattcatagtgcatttcCttagtgccaagttttcctac	6	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179463212	T	T	179463212	1	4	21	0	1	0	0	0	0	0	0	0	16861	696	24	4		4	TTN	2	179463212	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	51286	179463212	63736161	319	37367											
TTN	7273	broad.mit.edu	37	chr2	179473797	179473797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcaggtgatttcttttaCatggccagcagataaaatat	8	6	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179473797	A	A	179473797	1	1	21	0	1	0	0	0	0	0	0	0	16861	493	17	3		3	TTN	2	179473797	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	10585	179473797	63725576	320	37368											
TTN	7273	broad.mit.edu	37	chr2	179528792	179528792	+	Frame_Shift_Del	DEL	T	-	-													gaggcaccaccgacactttcTtttcagggataatctctttg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179528792	-	-	179528792	7	5	21	1	0	1	0	1	0	0	0	0	16861	1624	56	0		0	TTN	2	179528792	Frame_Shift_Del	DEL	T	TCGA-05-4424-01A-22D-1855-08	54995	179528792	63670581	321	37369											
TTN	7273	broad.mit.edu	37	chr2	179584928	179584928	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccctccactatggcccgtAactcaacagcatccccaata	5	17	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179584928	G	G	179584928	3	3	21	1	0	0	0	0	1	0	0	0	16861	372	13	5	81216	5	TTN	2	179584928	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	56136	179584928	63614445	322	37370											
TTN	7273	broad.mit.edu	37	chr2	179594626	179594626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgttgttgactgtccattCctcagcactaagactggact	8	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179594626	A	A	179594626	3	1	21	1	0	0	0	0	1	0	0	0	16861	854	30	3	86375	3	TTN	2	179594626	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	9698	179594626	63604747	323	37371											
TTN	7273	broad.mit.edu	37	chr2	179597036	179597036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatctcccttctttaacaGctgtgatggctctaactttt	7	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179597036	T	T	179597036	3	4	21	1	0	0	0	0	1	0	0	0	16861	962	34	3	88093	3	TTN	2	179597036	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2410	179597036	63602337	324	37372											
TTN	7273	broad.mit.edu	37	chr2	179611894	179611894	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aatatctctctagagtctctCctgggggtgtggagtatctc	11	9	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179611894	G	G	179611894	3	3	21	1	0	0	0	0	1	0	0	0	16861	855	30	4	95064	4	TTN	2	179611894	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	14858	179611894	63587479	325	37373											
TTN	7273	broad.mit.edu	37	chr2	179615813	179615813	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attagaaagggcatgtggatTttgcacaatactctcagctg	10	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179615813	A	A	179615813	3	1	21	1	0	0	0	0	1	0	0	0	16861	1841	64	5	98983	5	TTN	2	179615813	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	3919	179615813	63583560	326	37374											
SESTD1	91404	broad.mit.edu	37	chr2	179986599	179986599	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataggcccaggatgcctgaTtggagatctgatccaggaga	13	9	1	4	rs146149735	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179986599	A	A	179986599	3	1	21	1	0	0	0	0	1	0	0	0	14240	1493	52	5	774	5	SESTD1	2	179986599	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	370786	179986599	63212774	327	37375											
ITGA4	3676	broad.mit.edu	37	chr2	182399688	182399688	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttaacaattaccaacatTagtctactaaaaatgacatt	2	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182399688	C	C	182399688	1	2	21	0	1	0	0	0	0	0	0	0	7948	1769	61	5		5	ITGA4	2	182399688	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2413089	182399688	60799685	328	37376											
ZNF804A	91752	broad.mit.edu	37	chr2	185801785	185801785	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataaaaacatttcctgtaaGatcagagaaacagaaaagta	6	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185801785	T	T	185801785	3	4	21	1	0	0	0	0	1	0	0	0	18299	933	33	3	1676	3	ZNF804A	2	185801785	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3402097	185801785	57397588	329	37377											
ZC3H15	55854	broad.mit.edu	37	chr2	187366001	187366001	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catatgccatttgacataggTgcagatcccaagtctgtagt	9	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187366001	G	G	187366001	2	3	21	1	0	0	0	0	0	0	0	1	17693	1710	59	5		5	ZC3H15	2	187366001	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	1564216	187366001	55833372	330	37378											
ITGAV	3685	broad.mit.edu	37	chr2	187501011	187501011	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagtatggtcttttaagtaGaaaaatattttatgtgaaat	8	1	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187501011	T	T	187501011	1	4	21	0	1	0	0	0	0	0	0	0	7958	957	33	3		3	ITGAV	2	187501011	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	135010	187501011	55698362	331	37379											
CALCRL	10203	broad.mit.edu	37	chr2	188225374	188225374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcttctctgcaaacacGgccaccacaatgagtgtgtg	10	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188225374	T	T	188225374	2	4	21	1	0	0	0	0	0	0	0	1	2606	1103	39	1		1	CALCRL	2	188225374	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	724363	188225374	54973999	332	37380											
CALCRL	10203	broad.mit.edu	37	chr2	188245443	188245443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtaatcagggcagagctGcattgattcagttcctgctg	11	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188245443	T	T	188245443	3	4	21	1	0	0	0	0	1	0	0	0	2606	1328	46	3	1169	3	CALCRL	2	188245443	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	20069	188245443	54953930	333	37381											
DIRC1	116093	broad.mit.edu	37	chr2	189599405	189599405	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactttagcctcacagtattCaattcagacctagaagaaag	6	10	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189599405	T	T	189599405	2	4	21	1	0	0	0	0	0	0	0	1	4573	825	29	4		4	DIRC1	2	189599405	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1353962	189599405	53599968	334	37382											
COL3A1	1281	broad.mit.edu	37	chr2	189858671	189858671	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctctacaaagcataacacTcatcgatacatttattttca	2	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189858671	C	C	189858671	1	2	21	0	1	0	0	0	0	0	0	0	3720	1566	54	5		5	COL3A1	2	189858671	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	259266	189858671	53340702	335	37383											
COL3A1	1281	broad.mit.edu	37	chr2	189863490	189863490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcagcaggttatagagCaattgattagtagtatattt	8	4	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189863490	T	T	189863490	1	4	21	0	1	0	0	0	0	0	0	0	3720	725	25	4		4	COL3A1	2	189863490	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4819	189863490	53335883	336	37384											
GLS	2744	broad.mit.edu	37	chr2	191792198	191792198	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatgacttctcagggcagtTtgctttccatgtaagtaatt	9	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191792198	G	G	191792198	3	3	21	1	0	0	0	0	1	0	0	0	6527	1841	64	5	1461	5	GLS	2	191792198	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1928708	191792198	51407175	337	37385											
DNAH7	56171	broad.mit.edu	37	chr2	196740521	196740521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaatgggaggttgagccCcatatacctcccgagcaggc	11	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196740521	A	A	196740521	3	1	21	1	0	0	0	0	1	0	0	0	4646	623	22	2	6022	2	DNAH7	2	196740521	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4948323	196740521	46458852	338	37386											
C2orf66	401027	broad.mit.edu	37	chr2	197673871	197673871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgttctggaaaacagaatGctgtgtgcgtaaatccaaag	10	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197673871	T	T	197673871	1	4	21	0	1	0	0	0	0	0	0	0	2207	1334	46	3		3	C2orf66	2	197673871	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	933350	197673871	45525502	339	37387											
RFTN2	130132	broad.mit.edu	37	chr2	198436887	198436887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccgggagggagaaaggcGgcactcctcaggcaggtgtc	16	11	1	1	rs138418206		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198436887	T	T	198436887	3	4	21	1	0	0	0	0	1	0	0	0	13367	1116	39	1	158	1	RFTN2	2	198436887	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	763016	198436887	44762486	340	37388											
RFTN2	130132	broad.mit.edu	37	chr2	198511068	198511068	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttccttgcttcaatccagGttccactgctggaaaatgtg	8	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198511068	C	C	198511068	1	2	21	0	1	0	0	0	0	0	0	0	13367	1276	44	4		4	RFTN2	2	198511068	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	74181	198511068	44688305	341	37389											
CASP10	843	broad.mit.edu	37	chr2	202050751	202050751	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctggcagaactcctctAtatcatacggcagaagaagc	8	12	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202050751	G	G	202050751	3	3	21	1	0	0	0	0	1	0	0	0	2695	449	16	5	253	5	CASP10	2	202050751	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	3539683	202050751	41148622	342	37390											
CASP10	843	broad.mit.edu	37	chr2	202074230	202074230	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tatcctttcggcatgtggagGaaggcagctggtatattcag	13	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202074230	C	C	202074230	3	2	21	1	0	0	0	0	1	0	0	0	2695	1175	41	4	1390	4	CASP10	2	202074230	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	23479	202074230	41125143	343	37391											
CDK15	65061	broad.mit.edu	37	chr2	202698762	202698762	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgcacttgtttaagcGttgactgggcctggcctttg	13	8	0	1	rs146149737	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202698762	C	C	202698762	1	2	21	0	1	0	0	0	0	0	0	0	3161	1160	40	4		4	CDK15	2	202698762	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	624532	202698762	40500611	344	37392											
CTLA4	1493	broad.mit.edu	37	chr2	204736146	204736146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcctctggatccttgCagcagttagttcggggttgt	11	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204736146	A	A	204736146	3	1	21	1	0	0	0	0	1	0	0	0	4045	710	25	3	513	3	CTLA4	2	204736146	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2037384	204736146	38463227	345	37393											
PIKFYVE	200576	broad.mit.edu	37	chr2	209188940	209188940	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggttcttgttgagaaaacAgtgtctcggattgcccagga	12	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209188940	T	T	209188940	2	4	21	1	0	0	0	0	0	0	0	1	12019	175	7	5		5	PIKFYVE	2	209188940	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	4452794	209188940	34010433	346	37394											
PTH2R	5746	broad.mit.edu	37	chr2	209307110	209307110	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaattctttgaacgcctcTatgtaatgtataccgttggc	8	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209307110	A	A	209307110	3	1	21	1	0	0	0	0	1	0	0	0	12866	1522	53	5	451	5	PTH2R	2	209307110	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	118170	209307110	33892263	347	37395											
CPS1	1373	broad.mit.edu	37	chr2	211457611	211457611	+	Frame_Shift_Del	DEL	G	-	-													ttattcctttaggggattatGcatgagagcaaacccttctt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	211457611	-	-	211457611	7	5	21	1	0	1	0	1	0	0	0	0	3855	1319	46	0	1159	0	CPS1	2	211457611	Frame_Shift_Del	DEL	G	TCGA-05-4424-01A-22D-1855-08	2150501	211457611	31741762	348	37396											
ABCA12	26154	broad.mit.edu	37	chr2	215890417	215890417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttgattttaggacttcagGaactggaggaaagtaatctt	10	4	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215890417	T	T	215890417	3	4	21	1	0	0	0	0	1	0	0	0	30	1174	41	3	6692	3	ABCA12	2	215890417	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4432806	215890417	27308956	349	37397											
FN1	2335	broad.mit.edu	37	chr2	216272028	216272028	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaccttctactgatggcgaAtagactattctgtaccctgc	7	12	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216272028	G	G	216272028	2	3	21	1	0	0	0	0	0	0	0	1	6020	108	4	5		5	FN1	2	216272028	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	381611	216272028	26927345	350	37398											
MREG	55686	broad.mit.edu	37	chr2	216861126	216861126	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacatcatggggcatactcCataaattcttctcatcatcc	4	13	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216861126	G	G	216861126	3	3	21	1	0	0	0	0	1	0	0	0	9854	595	21	4	502	4	MREG	2	216861126	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	589098	216861126	26338247	351	37399											
TMEM169	92691	broad.mit.edu	37	chr2	216960771	216960771	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggctgtggctgctgccCtggcgctggatggggaatcc	18	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216960771	T	T	216960771	2	4	21	1	0	0	0	0	0	0	0	1	16207	680	24	4		4	TMEM169	2	216960771	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	99645	216960771	26238602	352	37400											
TNP1	7141	broad.mit.edu	37	chr2	217724871	217724871	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagcaggtgggcggggCtctactgtgctgtcactcac	15	12	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217724871	A	A	217724871	1	1	21	0	1	0	0	0	0	0	0	0	16456	812	28	3		3	TNP1	2	217724871	5'Flank	SNP	C	TCGA-05-4424-01A-22D-1855-08	764100	217724871	25474502	353	37401											
TNS1	7145	broad.mit.edu	37	chr2	218695090	218695090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgccactgcccacctacCtggctggatccgtcttctgg	10	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218695090	T	T	218695090	3	4	21	1	0	0	0	0	1	0	0	0	16466	695	24	4	2237	4	TNS1	2	218695090	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	970219	218695090	24504283	354	37402											
ARPC2	10109	broad.mit.edu	37	chr2	219099135	219099135	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatcaggtatgtagtcatgtGagcaactatggaatgacatg	11	5	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219099135	C	C	219099135	1	2	21	0	1	0	0	0	0	0	0	0	975	1305	45	4		4	ARPC2	2	219099135	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	404045	219099135	24100238	355	37403											
CYP27A1	1593	broad.mit.edu	37	chr2	219677900	219677900	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attatccctcacctgatcccGaccttcatccctccaaggac	4	18	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219677900	A	A	219677900	1	1	21	0	1	0	0	0	0	0	0	0	4191	1073	37	4		4	CYP27A1	2	219677900	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	578765	219677900	23521473	356	37404											
WNT10A	80326	broad.mit.edu	37	chr2	219754887	219754887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcactgcagcgtggtaaGggcctgagccatggggtccc	16	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219754887	T	T	219754887	3	4	21	1	0	0	0	0	1	0	0	0	17509	991	35	2	568	2	WNT10A	2	219754887	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	76987	219754887	23444486	357	37405											
ATG9A	79065	broad.mit.edu	37	chr2	220085430	220085430	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacctcaccctggaagttaCtatttctggcagtttttcct	6	11	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220085430	T	T	220085430	1	4	21	0	1	0	0	0	0	0	0	0	1106	580	20	4		4	ATG9A	2	220085430	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	330543	220085430	23113943	358	37406											
PTPRN	5798	broad.mit.edu	37	chr2	220164863	220164863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaggctcagaggagacaGggcttggcacctgctggact	17	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220164863	T	T	220164863	3	4	21	1	0	0	0	0	1	0	0	0	12915	1000	35	2	1719	2	PTPRN	2	220164863	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	79433	220164863	23034510	359	37407											
STK11IP	114790	broad.mit.edu	37	chr2	220473845	220473845	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctgctccctggagccccCatcctcagtctgcgcttctc	8	18	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220473845	T	T	220473845	2	4	21	1	0	0	0	0	0	0	0	1	15406	581	21	4		4	STK11IP	2	220473845	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	308982	220473845	22725528	360	37408											
STK11IP	114790	broad.mit.edu	37	chr2	220477938	220477938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacctgttgaaggtgactgGggagatgcggtgagtgagag	19	4	0	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220477938	T	T	220477938	3	4	21	1	0	0	0	0	1	0	0	0	15406	1232	43	2	2639	2	STK11IP	2	220477938	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4093	220477938	22721435	361	37409											
PAX3	5077	broad.mit.edu	37	chr2	223158868	223158868	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccagcaagtgcgccgccCaaggcgccaccgcttacctc	9	20	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223158868	G	G	223158868	1	3	21	0	1	0	0	0	0	0	0	0	11574	594	21	4		4	PAX3	2	223158868	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2680930	223158868	20040505	362	37410											
SPHKAP	80309	broad.mit.edu	37	chr2	228846568	228846568	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgatgaaccagctgcacgacAtctagaaactaaaataaaac	6	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228846568	T	T	228846568	3	4	21	1	0	0	0	0	1	0	0	0	15166	214	8	5	138	5	SPHKAP	2	228846568	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	5687700	228846568	14352805	363	37411											
ITM2C	81618	broad.mit.edu	37	chr2	231740324	231740324	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgtctgtctgtctctccGccttgctcagctggcccgag	11	15	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231740324	A	A	231740324	1	1	21	0	1	0	0	0	0	0	0	0	7984	1102	38	4		4	ITM2C	2	231740324	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2893756	231740324	11459049	364	37412											
DGKD	8527	broad.mit.edu	37	chr2	234299161	234299161	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtcatgcctttcttgattCttcactgaagttggctttcc	7	11	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234299161	T	T	234299161	1	4	21	0	1	0	0	0	0	0	0	0	4507	928	32	4		4	DGKD	2	234299161	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2558837	234299161	8900212	365	37413											
UGT1A9	54600	broad.mit.edu	37	chr2	234581233	234581233	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgcacttggaggaacattTattatgccaccgttttttca	7	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234581233	G	G	234581233	4	3	21	1	0	0	0	0	0	1	0	0	17078	1764	61	5	655	5	UGT1A9	2	234581233	Nonsense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	282072	234581233	8618140	366	37414											
UGT1A7	54577	broad.mit.edu	37	chr2	234591242	234591242	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggaggaacatttattttGcccctattttttcaaaaatg	6	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234591242	T	T	234591242	3	4	21	1	0	0	0	0	1	0	0	0	17076	1319	46	3	661	3	UGT1A7	2	234591242	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	10009	234591242	8608131	367	37415											
UGT1A1	54658	broad.mit.edu	37	chr2	234669362	234669362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcctccctggcagaaagCagctttgatgtcatgctgac	11	11	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234669362	A	A	234669362	3	1	21	1	0	0	0	0	1	0	0	0	17070	709	25	3	431	3	UGT1A1	2	234669362	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	78120	234669362	8530011	368	37416											
AGAP1	116987	broad.mit.edu	37	chr2	237029159	237029159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctttgttctgcttccGtgggcatctttctggcagaa	10	11	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237029159	A	A	237029159	1	1	21	0	1	0	0	0	0	0	0	0	366	1160	40	4		4	AGAP1	2	237029159	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2359797	237029159	6170214	369	37417											
COL6A3	1293	broad.mit.edu	37	chr2	238275710	238275710	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctttgtagaccactttgTtgatggcgtcaataatctgc	8	11	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238275710	C	C	238275710	3	2	21	1	0	0	0	0	1	0	0	0	3733	1725	60	5	4549	5	COL6A3	2	238275710	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1246551	238275710	4923663	370	37418											
RBM44	375316	broad.mit.edu	37	chr2	238726120	238726120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatgaagactcacagcaGgaatatcacagtgcagaaga	10	8	2	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238726120	T	T	238726120	3	4	21	1	0	0	0	0	1	0	0	0	13246	991	35	2	567	2	RBM44	2	238726120	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	450410	238726120	4473253	371	37419											
PER2	8864	broad.mit.edu	37	chr2	239171018	239171018	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagccagcattcaggggaaaAggggagcaaacaggatttat	13	6	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	239171018	G	G	239171018	1	3	21	0	1	0	0	0	0	0	0	0	11824	87	3	5		5	PER2	2	239171018	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	444898	239171018	4028355	372	37420											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239237850	239237850	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggggggaaagagaaggagaGactgagagacagggaccgag	21	4	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	239237850	C	C	239237850	3	2	21	1	0	0	0	0	1	0	0	0	16564	942	33	4	800	4	TRAF3IP1	2	239237850	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	66832	239237850	3961523	373	37421											
HDAC4	9759	broad.mit.edu	37	chr2	239990376	239990376	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtcacaaaaccccaaggttCcctctggcattgataatgcc	8	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	239990376	G	G	239990376	1	3	21	0	1	0	0	0	0	0	0	0	7076	870	30	4		4	HDAC4	2	239990376	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	752526	239990376	3208997	374	37422											
OR6B2	389090	broad.mit.edu	37	chr2	240969526	240969526	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcacacactcggtgcacacCagggagctgaagaagtagag	13	10	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240969526	G	G	240969526	2	3	21	1	0	0	0	0	0	0	0	1	11282	581	21	4		4	OR6B2	2	240969526	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	979150	240969526	2229847	375	37423											
ANKMY1	51281	broad.mit.edu	37	chr2	241494191	241494191	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccttcctgttgatgggcCtaaaagttcccgtcccatca	7	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241494191	T	T	241494191	1	4	21	0	1	0	0	0	0	0	0	0	634	696	24	4		4	ANKMY1	2	241494191	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	524665	241494191	1705182	376	37424											
KIF1A	547	broad.mit.edu	37	chr2	241686786	241686786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccagcttgtcccctgaGgtgggtgtgggcagagccag	17	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241686786	T	T	241686786	1	4	21	0	1	0	0	0	0	0	0	0	8353	1015	35	2		2	KIF1A	2	241686786	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	192595	241686786	1512587	377	37425											
CHL1	10752	broad.mit.edu	37	chr3	440829	440829	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatagaggtggaaagtactCaggtaaaattgtttcttaat	10	3	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	440829	G	G	440829	4	3	21	1	0	0	0	0	0	1	0	0	3380	838	29	4	3477	4	CHL1	3	440829	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08		440829	197581601	378	37426											
CNTN6	27255	broad.mit.edu	37	chr3	1424739	1424739	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatctgtggaatcatcaagGtttgtctacagaaatgaaag	9	6	5	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1424739	C	C	1424739	3	2	21	1	0	0	0	0	1	0	0	0	3677	1252	44	4	2346	4	CNTN6	3	1424739	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	983910	1424739	196597691	379	37427											
SUMF1	285362	broad.mit.edu	37	chr3	4459502	4459502	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcccacttggccagacacTtggtttaggggtgataaaag	13	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4459502	G	G	4459502	1	3	21	0	1	0	0	0	0	0	0	0	15503	1624	56	5		5	SUMF1	3	4459502	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	3034763	4459502	193562928	380	37428											
GRM7	2917	broad.mit.edu	37	chr3	7456680	7456680	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccagcagtgccccgcaaGcaatgaccttttcatttaac	8	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7456680	A	A	7456680	1	1	21	0	1	0	0	0	0	0	0	0	6868	986	34	4		4	GRM7	3	7456680	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2997178	7456680	190565750	381	37429											
C3orf32	51066	broad.mit.edu	37	chr3	8673789	8673789	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggattcactaaaggtctccaGacggtactaaaaggaaaaaa	9	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8673789	T	T	8673789	3	4	21	1	0	0	0	0	1	0	0	0	2244	933	33	3	813	3	C3orf32	3	8673789	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1217109	8673789	189348641	382	37430											
ATG7	10533	broad.mit.edu	37	chr3	11372738	11372738	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcataaaaaagcaaagAggaagtatgagcaatgtctg	11	4	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11372738	T	T	11372738	1	4	21	0	1	0	0	0	0	0	0	0	1105	319	11	5		5	ATG7	3	11372738	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2698949	11372738	186649692	383	37431											
TSEN2	80746	broad.mit.edu	37	chr3	12560662	12560662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgaagcaagggctgggtGcccaaagtgggactcaagta	14	8	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12560662	T	T	12560662	2	4	21	1	0	0	0	0	0	0	0	1	16737	1306	46	3		3	TSEN2	3	12560662	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1187924	12560662	185461768	384	37432											
FGD5	152273	broad.mit.edu	37	chr3	14942494	14942494	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaatggcccaactcctgctCtgtgtccctccccaggtgca	9	17	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14942494	T	T	14942494	1	4	21	0	1	0	0	0	0	0	0	0	5893	928	32	4		4	FGD5	3	14942494	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2381832	14942494	183079936	385	37433											
KCNH8	131096	broad.mit.edu	37	chr3	19554549	19554549	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaggagggggaggaagagGaggcagtctccctctctccc	17	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19554549	T	T	19554549	4	4	21	1	0	0	0	0	0	1	0	0	8108	1175	41	3	2217	3	KCNH8	3	19554549	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4612055	19554549	178467881	386	37434											
KAT2B	8850	broad.mit.edu	37	chr3	20113629	20113629	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagccagcagacaacaaaAgaaaacaaaaagcaaagcac	6	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20113629	G	G	20113629	1	3	21	0	1	0	0	0	0	0	0	0	8052	87	3	5		5	KAT2B	3	20113629	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	559080	20113629	177908801	387	37435											
DYNC1LI1	51143	broad.mit.edu	37	chr3	32587436	32587436	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatttttcttattaagcttGtttttccagctccatcttca	4	9	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32587436	C	C	32587436	3	2	21	1	0	0	0	0	1	0	0	0	4884	1377	48	4	1373	4	DYNC1LI1	3	32587436	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	12473807	32587436	165434994	388	37436											
ARPP21	10777	broad.mit.edu	37	chr3	35785456	35785456	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacaggcagcacagcaagcAggtacttggaatctgtttcc	10	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35785456	T	T	35785456	2	4	21	1	0	0	0	0	0	0	0	1	982	202	7	5		5	ARPP21	3	35785456	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	3198020	35785456	162236974	389	37437											
STAC	6769	broad.mit.edu	37	chr3	36485037	36485037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacgtccacacccgccaGggctggtctgcatccaggtg	12	16	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36485037	T	T	36485037	3	4	21	1	0	0	0	0	1	0	0	0	15357	1000	35	2	299	2	STAC	3	36485037	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	699581	36485037	161537393	390	37438											
ITGA9	3680	broad.mit.edu	37	chr3	37555473	37555473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggccgagcacccctctgGgccggcactgggggcaatgt	16	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37555473	T	T	37555473	1	4	21	0	1	0	0	0	0	0	0	0	7953	1247	43	2		2	ITGA9	3	37555473	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1070436	37555473	160466957	391	37439											
SLC22A13	9390	broad.mit.edu	37	chr3	38307747	38307747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtaggcttgtccttttgCtggtctctccaccggttgtg	13	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38307747	A	A	38307747	1	1	21	0	1	0	0	0	0	0	0	0	14557	812	28	3		3	SLC22A13	3	38307747	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	752274	38307747	159714683	392	37440											
ACVR2B	93	broad.mit.edu	37	chr3	38519472	38519472	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcccggaaggtaagggggcAgtgtggaagtggggccttga	21	6	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38519472	T	T	38519472	1	4	21	0	1	0	0	0	0	0	0	0	224	203	7	5		5	ACVR2B	3	38519472	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	211725	38519472	159502958	393	37441											
ZNF621	285268	broad.mit.edu	37	chr3	40570894	40570894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcagagggccctgtacGgggaggtgatgctggagaat	18	8	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40570894	T	T	40570894	3	4	21	1	0	0	0	0	1	0	0	0	18172	1116	39	1	115	1	ZNF621	3	40570894	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2051422	40570894	157451536	394	37442											
ULK4	54986	broad.mit.edu	37	chr3	41953149	41953149	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaacactccatagtgtttCtgctattattggagaaaacc	7	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41953149	A	A	41953149	3	1	21	1	0	0	0	0	1	0	0	0	17104	913	32	3	3040	3	ULK4	3	41953149	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1382255	41953149	156069281	395	37443											
SACM1L	22908	broad.mit.edu	37	chr3	45763598	45763598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagttgttatgtctgttaGgcagtcagcgagttggcctt	13	7	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45763598	T	T	45763598	1	4	21	0	1	0	0	0	0	0	0	0	13914	1015	35	2		2	SACM1L	3	45763598	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3810449	45763598	152258832	396	37444											
LTF	4057	broad.mit.edu	37	chr3	46479406	46479406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccatggtggtttctcgGggatgctagctagggtctac	13	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46479406	T	T	46479406	1	4	21	0	1	0	0	0	0	0	0	0	9166	1247	43	2		2	LTF	3	46479406	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	715808	46479406	151543024	397	37445											
ALS2CL	259173	broad.mit.edu	37	chr3	46719923	46719923	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtctgtctgcccagttAcccttccagccaatcatgac	8	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46719923	C	C	46719923	1	2	21	0	1	0	0	0	0	0	0	0	551	406	14	5		5	ALS2CL	3	46719923	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	240517	46719923	151302507	398	37446											
MYL3	4634	broad.mit.edu	37	chr3	46901262	46901262	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaacagtctacaccagttcTcacagcagtctacaccagtt	5	14	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46901262	C	C	46901262	1	2	21	0	1	0	0	0	0	0	0	0	10142	1566	54	5		5	MYL3	3	46901262	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	181339	46901262	151121168	399	37447											
WDR6	11180	broad.mit.edu	37	chr3	49049969	49049969	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagggcgtgggtaccggggAttgggggtctcggctctctg	20	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49049969	C	C	49049969	2	2	21	1	0	0	0	0	0	0	0	1	17437	320	12	5		5	WDR6	3	49049969	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	2148707	49049969	148972461	400	37448											
DOCK3	1795	broad.mit.edu	37	chr3	51393403	51393403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccactgcctcccctactgGgctgtcagtaaggagcaggg	13	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51393403	T	T	51393403	1	4	21	0	1	0	0	0	0	0	0	0	4728	1247	43	2		2	DOCK3	3	51393403	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2343434	51393403	146629027	401	37449											
DOCK3	1795	broad.mit.edu	37	chr3	51395333	51395333	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagccatgcactacaagatGagcagttctcaggggctact	10	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51395333	A	A	51395333	1	1	21	0	1	0	0	0	0	0	0	0	4728	1305	45	4		4	DOCK3	3	51395333	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1930	51395333	146627097	402	37450											
POC1A	25886	broad.mit.edu	37	chr3	52159198	52159198	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacagtggtggctggtccCtggcagaacaaacaaaaaat	11	9	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52159198	A	A	52159198	5	1	21	1	0	0	0	0	0	0	1	0	12270	695	24	2	426	2	POC1A	3	52159198	Splice_Site	SNP	C	TCGA-05-4424-01A-22D-1855-08	763865	52159198	145863232	403	37451											
ACOX2	8309	broad.mit.edu	37	chr3	58514509	58514509	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagcgcctgcccctccgcaGacagcaggtacctcaggcag	11	18	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514509	A	A	58514509	1	1	21	0	1	0	0	0	0	0	0	0	159	957	33	4		4	ACOX2	3	58514509	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	6355311	58514509	139507921	404	37452											
C3orf67	200844	broad.mit.edu	37	chr3	58849577	58849577	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agactgtctgctggatgccaGatatgaaatgtgatcagcat	11	7	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58849577	C	C	58849577	3	2	21	1	0	0	0	0	1	0	0	0	2263	933	33	4	786	4	C3orf67	3	58849577	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	335068	58849577	139172853	405	37453											
ROBO1	6091	broad.mit.edu	37	chr3	78717633	78717633	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacacaccatttactttaCcttgaacttcaatgtaagca	4	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78717633	A	A	78717633	5	1	21	1	0	0	0	0	0	0	1	0	13624	521	18	3	3404	3	ROBO1	3	78717633	Splice_Site	SNP	C	TCGA-05-4424-01A-22D-1855-08	19868056	78717633	119304797	406	37454											
CADM2	253559	broad.mit.edu	37	chr3	86063598	86063598	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcatgaattttggtttgagGaagccacaaatttggtaacc	9	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86063598	A	A	86063598	1	1	21	0	1	0	0	0	0	0	0	0	2593	1189	41	4		4	CADM2	3	86063598	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	7345965	86063598	111958832	407	37455											
CHMP2B	25978	broad.mit.edu	37	chr3	87295084	87295084	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagagcttttatattcataGatttttaattttatcaacga	5	4	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87295084	T	T	87295084	1	4	21	0	1	0	0	0	0	0	0	0	3386	957	33	3		3	CHMP2B	3	87295084	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1231486	87295084	110727346	408	37456											
EPHA3	2042	broad.mit.edu	37	chr3	89390222	89390222	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatccatggcttgtacccGtgagtagttttgctgcaacc	9	12	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89390222	A	A	89390222	5	1	21	1	0	0	0	0	0	0	1	0	5210	1159	40	4	985	4	EPHA3	3	89390222	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	2095138	89390222	108632208	409	37457											
PROS1	5627	broad.mit.edu	37	chr3	93619732	93619732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggatgttcttgcacacagCtgtgccacaaatgcttggct	11	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93619732	T	T	93619732	3	4	21	1	0	0	0	0	1	0	0	0	12664	797	28	4	1423	4	PROS1	3	93619732	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4229510	93619732	104402698	410	37458											
NSUN3	63899	broad.mit.edu	37	chr3	93802949	93802949	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttctctttttctatttctAgggagatactaacatctcca	4	9	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93802949	T	T	93802949	5	4	21	1	0	0	0	0	0	0	1	0	10774	434	15	5	131	5	NSUN3	3	93802949	Splice_Site	SNP	A	TCGA-05-4424-01A-22D-1855-08	183217	93802949	104219481	411	37459											
EPHA6	285220	broad.mit.edu	37	chr3	97311551	97311551	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcatccagtgccagggGgaggatctttgccccccagg	13	16	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97311551	T	T	97311551	4	4	21	1	0	0	0	0	0	1	0	0	5213	1233	43	2	2596	2	EPHA6	3	97311551	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3508602	97311551	100710879	412	37460											
EPHA6	285220	broad.mit.edu	37	chr3	97329609	97329609	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttctgtaattgctctaatCcatgtgtattctcttgctct	5	9	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97329609	A	A	97329609	1	1	21	0	1	0	0	0	0	0	0	0	5213	870	30	3		3	EPHA6	3	97329609	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	18058	97329609	100692821	413	37461											
OR5H15	403274	broad.mit.edu	37	chr3	97887750	97887750	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgggaatttagcttttgtGgatgcttggatatcatccac	10	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97887750	A	A	97887750	2	1	21	1	0	0	0	0	0	0	0	1	11255	1335	47	4		4	OR5H15	3	97887750	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	558141	97887750	100134680	414	37462											
OR5H15	403274	broad.mit.edu	37	chr3	97888436	97888436	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgagaaataagcaagtcaTagtttcattcataaaaatgt	6	5	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97888436	G	G	97888436	3	3	21	1	0	0	0	0	1	0	0	0	11255	1406	49	5	895	5	OR5H15	3	97888436	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	686	97888436	100133994	415	37463											
OR5K4	403278	broad.mit.edu	37	chr3	98072782	98072782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaagacgcttctgtttGtggtgttctctgccatctat	10	9	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98072782	T	T	98072782	3	4	21	1	0	0	0	0	1	0	0	0	11263	1377	48	3	87	3	OR5K4	3	98072782	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	184346	98072782	99949648	416	37464											
ABI3BP	25890	broad.mit.edu	37	chr3	100523794	100523794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagacatgtcaaggtgtaGcctgaacactgataaaacaa	8	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100523794	T	T	100523794	1	4	21	0	1	0	0	0	0	0	0	0	91	986	34	3		3	ABI3BP	3	100523794	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2451012	100523794	97498636	417	37465											
IMPG2	50939	broad.mit.edu	37	chr3	100976422	100976422	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggattcaaggaagagttcccCagcaaaaaattctgctgcaa	9	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100976422	G	G	100976422	2	3	21	1	0	0	0	0	0	0	0	1	7799	581	21	4		4	IMPG2	3	100976422	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	452628	100976422	97046008	418	37466											
ZPLD1	131368	broad.mit.edu	37	chr3	102188064	102188064	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagaaactaagttctgcatAgaaagtggatatgtgttaga	10	4	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102188064	G	G	102188064	1	3	21	0	1	0	0	0	0	0	0	0	18350	435	15	5		5	ZPLD1	3	102188064	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1211642	102188064	95834366	419	37467											
MYH15	22989	broad.mit.edu	37	chr3	108205246	108205246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgccattaccagattttGctttgacaactaacaagcct	5	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108205246	T	T	108205246	1	4	21	0	1	0	0	0	0	0	0	0	10128	1334	46	3		3	MYH15	3	108205246	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	6017182	108205246	89817184	420	37468											
PHLDB2	90102	broad.mit.edu	37	chr3	111603652	111603652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaactaggaagtactccaGcagcagcctgagtcacatgg	12	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111603652	T	T	111603652	3	4	21	1	0	0	0	0	1	0	0	0	11947	971	34	3	815	3	PHLDB2	3	111603652	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3398406	111603652	86418778	421	37469											
PHLDB2	90102	broad.mit.edu	37	chr3	111686524	111686524	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttatgcataatgtttaGgaacgggaaatggaagccaa	11	4	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111686524	T	T	111686524	5	4	21	1	0	0	0	0	0	0	1	0	11947	1014	35	2	3307	2	PHLDB2	3	111686524	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	82872	111686524	86335906	422	37470											
TMPRSS7	344805	broad.mit.edu	37	chr3	111769716	111769716	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcattttttaattacaaaaGaatattgcttaattttataa	2	3	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111769716	C	C	111769716	1	2	21	0	1	0	0	0	0	0	0	0	16375	957	33	4		4	TMPRSS7	3	111769716	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	83192	111769716	86252714	423	37471											
GCET2	257144	broad.mit.edu	37	chr3	111845684	111845684	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagctcaccatctactgagGacaaaggacatgcaattgga	10	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111845684	T	T	111845684	1	4	21	0	1	0	0	0	0	0	0	0	6350	1189	41	3		3	GCET2	3	111845684	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	75968	111845684	86176746	424	37472											
SLC9A10	285335	broad.mit.edu	37	chr3	111860042	111860042	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagttactccttcttgatGtagggaagtgtgtttctgca	11	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111860042	T	T	111860042	1	4	21	0	1	0	0	0	0	0	0	0	14824	1392	48	3		3	SLC9A10	3	111860042	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	14358	111860042	86162388	425	37473											
SLC9A10	285335	broad.mit.edu	37	chr3	111962757	111962757	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgttgcctaggctgtatAtggattctttctttattatt	7	6	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111962757	G	G	111962757	1	3	21	0	1	0	0	0	0	0	0	0	14824	464	16	5		5	SLC9A10	3	111962757	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	102715	111962757	86059673	426	37474											
IGSF11	152404	broad.mit.edu	37	chr3	118624668	118624668	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacgaacactggagagctatCaataaatttcttttttgtgg	9	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118624668	A	A	118624668	1	1	21	0	1	0	0	0	0	0	0	0	7668	841	29	3		3	IGSF11	3	118624668	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6661911	118624668	79397762	427	37475											
GSK3B	2932	broad.mit.edu	37	chr3	119748274	119748274	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaatatcttatgttttgtgGagcttcgcctccagcacagt	8	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119748274	T	T	119748274	1	4	21	0	1	0	0	0	0	0	0	0	6890	1189	41	3		3	GSK3B	3	119748274	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1123606	119748274	78274156	428	37476											
STXBP5L	9515	broad.mit.edu	37	chr3	120840407	120840407	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggattttattccagtgtaatCttaatttctttgtttcagtc	6	6	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120840407	A	A	120840407	1	1	21	0	1	0	0	0	0	0	0	0	15475	928	32	3		3	STXBP5L	3	120840407	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1092133	120840407	77182023	429	37477											
GOLGB1	2804	broad.mit.edu	37	chr3	121417301	121417301	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactttttaacctttccaacTcatcctgatgacactgacca	4	13	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121417301	A	A	121417301	3	1	21	1	0	0	0	0	1	0	0	0	6629	1551	54	5	7765	5	GOLGB1	3	121417301	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	576894	121417301	76605129	430	37478											
CCDC37	348807	broad.mit.edu	37	chr3	126142136	126142137	+	Intron	DNP	CC	AA	AA													tcctgtctgctcaggctggtCccagagtcccgaccctgcca							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	126142137	AA	AA	126142136	1	1	21	0	1	0	0	0	0	0	0	0	2836	870	30	3		3	CCDC37	3	126142136	Intron	DNP	CC	TCGA-05-4424-01A-22D-1855-08	4724835	126142136	71880294	431	37479											
ACAD9	28976	broad.mit.edu	37	chr3	128598334	128598334	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcggcgcgggccagccaGgtgcacgtgactaaggcctt	16	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128598334	T	T	128598334	1	4	21	0	1	0	0	0	0	0	0	0	111	1014	35	2		2	ACAD9	3	128598334	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	2456198	128598334	69424096	432	37480											
CCDC48	79825	broad.mit.edu	37	chr3	128757782	128757782	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcagagcccacgcagtgGctggagggtgtcctgaggag	16	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128757782	C	C	128757782	1	2	21	0	1	0	0	0	0	0	0	0	2847	1218	42	4		4	CCDC48	3	128757782	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	159448	128757782	69264648	433	37481											
COL6A6	131873	broad.mit.edu	37	chr3	130284269	130284269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgtgaccatcttcaccCtgggcatagagggcgccagc	14	12	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130284269	A	A	130284269	3	1	21	1	0	0	0	0	1	0	0	0	3735	680	24	2	1103	2	COL6A6	3	130284269	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1526487	130284269	67738161	434	37482											
ACAD11	84129	broad.mit.edu	37	chr3	132337647	132337647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaacatgccagagtgacCataatttaccaggactcaca	8	10	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132337647	T	T	132337647	1	4	21	0	1	0	0	0	0	0	0	0	109	609	21	4		4	ACAD11	3	132337647	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2053378	132337647	65684783	435	37483											
CEP63	80254	broad.mit.edu	37	chr3	134251670	134251670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagaaaaagcaaatgagGgaattcagaggaaataccaa	9	6	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134251670	T	T	134251670	3	4	21	1	0	0	0	0	1	0	0	0	3287	1223	43	2	383	2	CEP63	3	134251670	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1914023	134251670	63770760	436	37484											
EPHB1	2047	broad.mit.edu	37	chr3	134884855	134884855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgcccctgattgctgGctcggcagcggccggggtcg	17	14	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134884855	T	T	134884855	3	4	21	1	0	0	0	0	1	0	0	0	5216	1203	42	3	1661	3	EPHB1	3	134884855	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	633185	134884855	63137575	437	37485											
TRIM42	287015	broad.mit.edu	37	chr3	140407476	140407476	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggttgcacttacctctttGacctctaggatctggtcact	8	11	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140407476	C	C	140407476	1	2	21	0	1	0	0	0	0	0	0	0	16641	1305	45	4		4	TRIM42	3	140407476	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5522621	140407476	57614954	438	37486											
ATR	545	broad.mit.edu	37	chr3	142186745	142186745	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatacataattacccaacatCagtttataagcactaagatt	3	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142186745	T	T	142186745	1	4	21	0	1	0	0	0	0	0	0	0	1208	841	29	4		4	ATR	3	142186745	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1779269	142186745	55835685	439	37487											
ATR	545	broad.mit.edu	37	chr3	142188288	142188288	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catcgtgagaatgacaaattCgagagatcaattgtgaaaaa	9	5	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142188288	T	T	142188288	3	4	21	1	0	0	0	0	1	0	0	0	1208	884	31	4	1531	4	ATR	3	142188288	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1543	142188288	55834142	440	37488											
SLC9A9	285195	broad.mit.edu	37	chr3	143223110	143223110	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttactccggccttcaccttCaccatggtgtctcagggatg	9	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143223110	A	A	143223110	1	1	21	0	1	0	0	0	0	0	0	0	14835	841	29	3		3	SLC9A9	3	143223110	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1034822	143223110	54799320	441	37489											
ZIC4	84107	broad.mit.edu	37	chr3	147120725	147120725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatctttcggtctttcttTgaccattttcaaattttgaa	5	7	4	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147120725	C	C	147120725	1	2	21	0	1	0	0	0	0	0	0	0	17807	1827	63	5		5	ZIC4	3	147120725	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	3897615	147120725	50901705	442	37490											
CPB1	1360	broad.mit.edu	37	chr3	148545844	148545844	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atcacattaacataatccgcGagttggccagcacgacccag	8	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148545844	C	C	148545844	3	2	21	1	0	0	0	0	1	0	0	0	3828	1059	37	4	133	4	CPB1	3	148545844	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1425119	148545844	49476586	443	37491											
MED12L	116931	broad.mit.edu	37	chr3	150840592	150840592	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagcttattttagcagcaTattagctgagaaactgaagc	10	6	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150840592	C	C	150840592	3	2	21	1	0	0	0	0	1	0	0	0	9522	1406	49	5	237	5	MED12L	3	150840592	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	2294748	150840592	47181838	444	37492											
MED12L	116931	broad.mit.edu	37	chr3	150908777	150908777	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaactctactgggaaccatGttcaaatgggtcatgtagtg	10	7	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150908777	A	A	150908777	1	1	21	0	1	0	0	0	0	0	0	0	9522	1392	48	4		4	MED12L	3	150908777	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	68185	150908777	47113653	445	37493											
MED12L	116931	broad.mit.edu	37	chr3	151105804	151105804	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctccagccactgcccctGcctcctgaggaggaagagga	11	15	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151105804	T	T	151105804	2	4	21	1	0	0	0	0	0	0	0	1	9522	1306	46	3		3	MED12L	3	151105804	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	197027	151105804	46916626	446	37494											
SGEF	26084	broad.mit.edu	37	chr3	153840368	153840368	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagtccggccggaaggcaaAggaccccgaacgggggctct	16	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153840368	T	T	153840368	3	4	21	1	0	0	0	0	1	0	0	0	14318	72	3	5	589	5	SGEF	3	153840368	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	2734564	153840368	44182062	447	37495											
GPR149	344758	broad.mit.edu	37	chr3	154070110	154070111	+	Intron	DNP	GG	TT	TT													tgaccagccattcctccgttGgggattagaagacttgtttc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	154070111	TT	TT	154070110	1	4	21	0	1	0	0	0	0	0	0	0	6719	1363	47	2		2	GPR149	3	154070110	Intron	DNP	GG	TCGA-05-4424-01A-22D-1855-08	229742	154070110	43952320	448	37496											
GMPS	8833	broad.mit.edu	37	chr3	155628515	155628515	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaaaaagttatatggagcAcagttccaccctgaagttgg	9	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155628515	C	C	155628515	2	2	21	1	0	0	0	0	0	0	0	1	6562	146	6	5		5	GMPS	3	155628515	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	1558405	155628515	42393915	449	37497											
PPM1L	151742	broad.mit.edu	37	chr3	160783209	160783209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcacaacgtgtttgattgCtctgctatcagataaagacc	9	9	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160783209	A	A	160783209	3	1	21	1	0	0	0	0	1	0	0	0	12445	797	28	3	603	3	PPM1L	3	160783209	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5154694	160783209	37239221	450	37498											
SI	6476	broad.mit.edu	37	chr3	164710115	164710115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacaggttccagtactgGggtaaccataaatgctggac	10	9	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164710115	T	T	164710115	3	4	21	1	0	0	0	0	1	0	0	0	14410	1232	43	2	599	2	SI	3	164710115	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3926906	164710115	33312315	451	37499											
SI	6476	broad.mit.edu	37	chr3	164786924	164786924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattatcaacgaagaagcaCcaaggaataagagagtcatt	9	6	2	3	rs138564183		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164786924	A	A	164786924	3	1	21	1	0	0	0	0	1	0	0	0	14410	508	18	3	5348	3	SI	3	164786924	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	76809	164786924	33235506	452	37500											
LRRIQ4	344657	broad.mit.edu	37	chr3	169539777	169539777	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaatgatccacagcacgTcaatgatagaacatttttca	7	8	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169539777	A	A	169539777	3	1	21	1	0	0	0	0	1	0	0	0	9118	1667	58	5	70	5	LRRIQ4	3	169539777	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	4752853	169539777	28482653	453	37501											
PRKCI	5584	broad.mit.edu	37	chr3	170002369	170002369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccacattaaactcactgaCtacggcatgtgtaaggtgag	11	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170002369	A	A	170002369	3	1	21	1	0	0	0	0	1	0	0	0	12620	564	20	3	1234	3	PRKCI	3	170002369	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	462592	170002369	28020061	454	37502											
PEX5L	51555	broad.mit.edu	37	chr3	179592122	179592122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttttgttacctgagtcGgagccactaattccaattct	7	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179592122	T	T	179592122	3	4	21	1	0	0	0	0	1	0	0	0	11844	1116	39	1	1197	1	PEX5L	3	179592122	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	9589753	179592122	18430308	455	37503											
YEATS2	55689	broad.mit.edu	37	chr3	183474513	183474513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttgtaccatctaaaggGtttgatctttattaaaaatg	6	4	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183474513	T	T	183474513	1	4	21	0	1	0	0	0	0	0	0	0	17599	1276	44	3		3	YEATS2	3	183474513	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3882391	183474513	14547917	456	37504											
ABCC5	10057	broad.mit.edu	37	chr3	183699470	183699470	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattataagacccaaagaatCcaaggtccttctaccacatg	5	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183699470	A	A	183699470	1	1	21	0	1	0	0	0	0	0	0	0	56	870	30	3		3	ABCC5	3	183699470	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	224957	183699470	14322960	457	37505											
EIF4G1	1981	broad.mit.edu	37	chr3	184043632	184043632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtatgcccctctttttGtgtcaggccgtggacttccc	9	14	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184043632	T	T	184043632	1	4	21	0	1	0	0	0	0	0	0	0	5078	1392	48	3		3	EIF4G1	3	184043632	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	344162	184043632	13978798	458	37506											
MASP1	5648	broad.mit.edu	37	chr3	186953804	186953804	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccacgggtaacttgacatActgcaggacatctgacaagg	10	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186953804	G	G	186953804	1	3	21	0	1	0	0	0	0	0	0	0	9414	391	14	5		5	MASP1	3	186953804	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2910172	186953804	11068626	459	37507											
LEPREL1	55214	broad.mit.edu	37	chr3	189700804	189700804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcttccccttcccctcCtttatagggtaaaagtgcac	5	16	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189700804	A	A	189700804	1	1	21	0	1	0	0	0	0	0	0	0	8802	696	24	2		2	LEPREL1	3	189700804	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2747000	189700804	8321626	460	37508											
FGF12	2257	broad.mit.edu	37	chr3	191861949	191861949	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataacaaaaattacttatgaCagtggacataaatttccttc	4	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191861949	T	T	191861949	1	4	21	0	1	0	0	0	0	0	0	0	5898	493	17	4		4	FGF12	3	191861949	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2161145	191861949	6160481	461	37509											
PCYT1A	5130	broad.mit.edu	37	chr3	195968943	195968943	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagataccttctgtcctcTgtgttggagcaaacatgcct	10	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195968943	C	C	195968943	3	2	21	1	0	0	0	0	1	0	0	0	11704	1580	55	5	531	5	PCYT1A	3	195968943	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	4106994	195968943	2053487	462	37510											
WDR53	348793	broad.mit.edu	37	chr3	196288274	196288274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgccctctgctccagaagCcagcagcccttctttacttg	7	17	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196288274	A	A	196288274	3	1	21	1	0	0	0	0	1	0	0	0	17432	739	26	3	1011	3	WDR53	3	196288274	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	319331	196288274	1734156	463	37511											
PDE6B	5158	broad.mit.edu	37	chr4	650004	650004	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagaccttccgctgttttgGatgaaatcgtttttctgatg	9	8	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	650004	A	A	650004	1	1	21	0	1	0	0	0	0	0	0	0	11740	1189	41	4		4	PDE6B	4	650004	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08		650004	190504272	464	37512											
RGS12	6002	broad.mit.edu	37	chr4	3418612	3418612	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtctgggtccctcctgtgActgtcccaccttacatcttc	7	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3418612	G	G	3418612	1	3	21	0	1	0	0	0	0	0	0	0	13404	290	10	5		5	RGS12	4	3418612	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2768608	3418612	187735664	465	37513											
KIAA0232	9778	broad.mit.edu	37	chr4	6878407	6878407	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgttacacaaatgccaagGgagagagtggtttagaagaa	12	4	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6878407	A	A	6878407	3	1	21	1	0	0	0	0	1	0	0	0	8233	1233	43	4	3957	4	KIAA0232	4	6878407	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3459795	6878407	184275869	466	37514											
GRPEL1	80273	broad.mit.edu	37	chr4	7062639	7062639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctcagagtgcgcccatGcagcttgtaccccactttgc	11	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7062639	T	T	7062639	3	4	21	1	0	0	0	0	1	0	0	0	6872	1319	46	3	53	3	GRPEL1	4	7062639	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	184232	7062639	184091637	467	37515											
FBXL5	26234	broad.mit.edu	37	chr4	15646167	15646167	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaagcatctcggagagtttAttgtcagaatgtacattata	8	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15646167	T	T	15646167	3	4	21	1	0	0	0	0	1	0	0	0	5779	446	16	5	1866	5	FBXL5	4	15646167	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	8583528	15646167	175508109	468	37516											
CD38	952	broad.mit.edu	37	chr4	15818249	15818249	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagttgggaactcagaccGtaccttgcaacaaggtaatt	10	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15818249	A	A	15818249	3	1	21	1	0	0	0	0	1	0	0	0	3039	1145	40	4	355	4	CD38	4	15818249	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	172082	15818249	175336027	469	37517											
CD38	952	broad.mit.edu	37	chr4	15826651	15826651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttccagtgaggctctgGgccctgtgggattgcccagg	14	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15826651	T	T	15826651	1	4	21	0	1	0	0	0	0	0	0	0	3039	1247	43	2		2	CD38	4	15826651	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	8402	15826651	175327625	470	37518											
LGI2	55203	broad.mit.edu	37	chr4	25005757	25005757	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaatgcgagagacctcTatgtcttggaatttgacaaa	10	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25005757	C	C	25005757	3	2	21	1	0	0	0	0	1	0	0	0	8824	1512	53	5	687	5	LGI2	4	25005757	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	9179106	25005757	166148519	471	37519											
PGM2	55276	broad.mit.edu	37	chr4	37848688	37848688	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtccagcaccgtctcctccAaaatcttgcgggccattgcc	8	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37848688	T	T	37848688	4	4	21	1	0	0	0	0	0	1	0	0	11893	131	5	5	1178	5	PGM2	4	37848688	Nonsense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	12842931	37848688	153305588	472	37520											
ATP10D	57205	broad.mit.edu	37	chr4	47574327	47574327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctccatggtaaattctctGtggcagagtgaggctgtgtg	13	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47574327	A	A	47574327	1	1	21	0	1	0	0	0	0	0	0	0	1122	1392	48	4		4	ATP10D	4	47574327	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	9725639	47574327	143579949	473	37521											
NFXL1	152518	broad.mit.edu	37	chr4	47864702	47864702	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcctaatatcaccaaatTtataaaatgagatgcatcta	5	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47864702	G	G	47864702	1	3	21	0	1	0	0	0	0	0	0	0	10483	1856	64	5		5	NFXL1	4	47864702	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	290375	47864702	143289574	474	37522											
FRYL	285527	broad.mit.edu	37	chr4	48592824	48592824	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtctgctattacaaggaaGactctgagacctatgttcat	8	9	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48592824	T	T	48592824	2	4	21	1	0	0	0	0	0	0	0	1	6124	929	33	3		3	FRYL	4	48592824	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	728122	48592824	142561452	475	37523											
CWH43	80157	broad.mit.edu	37	chr4	49032935	49032935	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaggggaaaagttgggttTctatacagactttggtccaa	12	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49032935	C	C	49032935	3	2	21	1	0	0	0	0	1	0	0	0	4106	1783	62	5	1508	5	CWH43	4	49032935	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	440111	49032935	142121341	476	37524											
LRRC66	339977	broad.mit.edu	37	chr4	52861976	52861976	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcactttttttgccaCagtctgtcaacataaggcct	7	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52861976	G	G	52861976	2	3	21	1	0	0	0	0	0	0	0	1	9105	465	17	4		4	LRRC66	4	52861976	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	3829041	52861976	138292300	477	37525											
KDR	3791	broad.mit.edu	37	chr4	55948769	55948769	+	Frame_Shift_Del	DEL	C	-	-													aatgtttttacactcacaggCcggctctttcgcttactgtt					rs67220958		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55948769	-	-	55948769	7	5	21	1	0	1	0	1	0	0	0	0	8209	726	26	0	386	0	KDR	4	55948769	Frame_Shift_Del	DEL	C	TCGA-05-4424-01A-22D-1855-08	3086793	55948769	135205507	478	37526											
KDR	3791	broad.mit.edu	37	chr4	55964017	55964017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagacatcaactagataGggtgaccatacatcccaatt	8	10	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55964017	T	T	55964017	1	4	21	0	1	0	0	0	0	0	0	0	8209	1015	35	2		2	KDR	4	55964017	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	15248	55964017	135190259	479	37527											
PDCL2	132954	broad.mit.edu	37	chr4	56447105	56447105	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacataaattatagattatCaaattgtttaaaaatttttt	2	3	1	1	rs28683692	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56447105	A	A	56447105	1	1	21	0	1	0	0	0	0	0	0	0	11721	841	29	3		3	PDCL2	4	56447105	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	483088	56447105	134707171	480	37528											
UGT2B10	7365	broad.mit.edu	37	chr4	69692215	69692215	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccccagaatgaccttctaGgtaacactctggtgaacaat	7	11	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69692215	T	T	69692215	3	4	21	1	0	0	0	0	1	0	0	0	17082	1014	35	2	1101	2	UGT2B10	4	69692215	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	13245110	69692215	121462061	481	37529											
UGT2B7	7364	broad.mit.edu	37	chr4	69968459	69968459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctttagtaatttgcacCaattcttttggtagtgcccg	7	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69968459	A	A	69968459	1	1	21	0	1	0	0	0	0	0	0	0	17088	609	21	2		2	UGT2B7	4	69968459	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	276244	69968459	121185817	482	37530											
C4orf35	85438	broad.mit.edu	37	chr4	71201880	71201880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagactataaggaagacaCctccacaactgaaacggata	7	12	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71201880	A	A	71201880	3	1	21	1	0	0	0	0	1	0	0	0	2288	507	18	3	1126	3	C4orf35	4	71201880	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1233421	71201880	119952396	483	37531											
MUC7	4589	broad.mit.edu	37	chr4	71347134	71347134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctgcaactacaccagctCcaccatcttcctcagctcca	3	20	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71347134	A	A	71347134	3	1	21	1	0	0	0	0	1	0	0	0	10075	855	30	3	679	3	MUC7	4	71347134	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	145254	71347134	119807142	484	37532											
SLC4A4	8671	broad.mit.edu	37	chr4	72400178	72400178	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaacactaattgattaaAaaccaagggagctttgttgg	9	5	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72400178	T	T	72400178	1	4	21	0	1	0	0	0	0	0	0	0	14770	29	1	5		5	SLC4A4	4	72400178	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1053044	72400178	118754098	485	37533											
EREG	2069	broad.mit.edu	37	chr4	75250497	75250497	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaatatgagagagttacctCaggggatccagagttgccgc	14	8	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75250497	T	T	75250497	3	4	21	1	0	0	0	0	1	0	0	0	5262	838	29	4	500	4	EREG	4	75250497	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2850319	75250497	115903779	486	37534											
NUP54	53371	broad.mit.edu	37	chr4	77065569	77065569	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcctgtgttagttggggcaGaaaagctgaatgcagaacct	13	7	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77065569	C	C	77065569	3	2	21	1	0	0	0	0	1	0	0	0	10862	942	33	4	1442	4	NUP54	4	77065569	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1815072	77065569	114088707	487	37535											
FRAS1	80144	broad.mit.edu	37	chr4	79360289	79360289	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgtagtaatgtaaatgaagGatttctgcctaaattggctg	10	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79360289	A	A	79360289	1	1	21	0	1	0	0	0	0	0	0	0	6102	1189	41	4		4	FRAS1	4	79360289	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2294720	79360289	111793987	488	37536											
SEC31A	22872	broad.mit.edu	37	chr4	83795890	83795890	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgttccatgcaatgcagctGatatcttctggcggctacaa	9	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83795890	T	T	83795890	2	4	21	1	0	0	0	0	0	0	0	1	14111	1280	45	3		3	SEC31A	4	83795890	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	4435601	83795890	107358386	489	37537											
AGPAT9	84803	broad.mit.edu	37	chr4	84509320	84509320	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttattatattgtttcttaaGagtgcccagaatggcacaat	7	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84509320	C	C	84509320	1	2	21	0	1	0	0	0	0	0	0	0	392	957	33	4		4	AGPAT9	4	84509320	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	713430	84509320	106644956	490	37538											
WDFY3	23001	broad.mit.edu	37	chr4	85771119	85771119	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcgtgagacttgtgttgtGaactgcagaagatcagaaaa	12	5	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85771119	A	A	85771119	2	1	21	1	0	0	0	0	0	0	0	1	17397	1281	45	4		4	WDFY3	4	85771119	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1261799	85771119	105383157	491	37539											
MMRN1	22915	broad.mit.edu	37	chr4	90857896	90857896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccaacggtaaatcttaCcacagtcctgataggccgga	9	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90857896	A	A	90857896	3	1	21	1	0	0	0	0	1	0	0	0	9764	507	18	3	3087	3	MMRN1	4	90857896	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5086777	90857896	100296380	492	37540											
SMARCAD1	56916	broad.mit.edu	37	chr4	95195932	95195932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatggtgccctactttgaaGgtcctctgttactatggtaa	9	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95195932	T	T	95195932	3	4	21	1	0	0	0	0	1	0	0	0	14886	991	35	2	1762	2	SMARCAD1	4	95195932	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4338036	95195932	95958344	493	37541											
UNC5C	8633	broad.mit.edu	37	chr4	96090583	96090583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaaaatgtgctcaacaGtgtgacttacatatctattt	7	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96090583	T	T	96090583	1	4	21	0	1	0	0	0	0	0	0	0	17119	1044	36	3		3	UNC5C	4	96090583	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	894651	96090583	95063693	494	37542											
UNC5C	8633	broad.mit.edu	37	chr4	96140288	96140288	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacgtaaactcagagaggtCatcttggggggtgacagcac	15	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96140288	T	T	96140288	3	4	21	1	0	0	0	0	1	0	0	0	17119	826	29	4	1350	4	UNC5C	4	96140288	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	49705	96140288	95013988	495	37543											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99300218	99300218	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggtgcacagattgtaattGaccatttaaggtcactgtgc	11	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99300218	A	A	99300218	3	1	21	1	0	0	0	0	1	0	0	0	13147	1290	45	4	433	4	RAP1GDS1	4	99300218	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3159930	99300218	91854058	496	37544											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99341260	99341260	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcctgttcagttcaaacTtctgggaacattaagaatgt	8	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99341260	G	G	99341260	3	3	21	1	0	0	0	0	1	0	0	0	13147	1609	56	5	1310	5	RAP1GDS1	4	99341260	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	41042	99341260	91813016	497	37545											
ADH1A	124	broad.mit.edu	37	chr4	100208120	100208120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactaaccacgtggtcatctGtgccacagattcctacagcc	7	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100208120	T	T	100208120	3	4	21	1	0	0	0	0	1	0	0	0	307	1377	48	3	1009	3	ADH1A	4	100208120	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	866860	100208120	90946156	498	37546											
MANBA	4126	broad.mit.edu	37	chr4	103557061	103557061	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgagtgaagatctgacacAccatagatatagaacgtgtt	9	8	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103557061	G	G	103557061	2	3	21	1	0	0	0	0	0	0	0	1	9311	146	6	5		5	MANBA	4	103557061	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	3348941	103557061	87597215	499	37547											
CENPE	1062	broad.mit.edu	37	chr4	104068462	104068462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actataacacaaacacaagcCttgattcttataagacactt	3	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104068462	A	A	104068462	1	1	21	0	1	0	0	0	0	0	0	0	3260	696	24	2		2	CENPE	4	104068462	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	511401	104068462	87085814	500	37548											
HADH	3033	broad.mit.edu	37	chr4	108931125	108931125	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgggggatttctggctttCtttctttctttttttttttt	7	5	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108931125	T	T	108931125	1	4	21	0	1	0	0	0	0	0	0	0	7008	928	32	4		4	HADH	4	108931125	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4862663	108931125	82223151	501	37549											
MYOZ2	51778	broad.mit.edu	37	chr4	120107118	120107118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttttttttaatttcccaCagggttgccacaccatttgg	7	9	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120107118	A	A	120107118	1	1	21	0	1	0	0	0	0	0	0	0	10190	493	17	3		3	MYOZ2	4	120107118	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	11175993	120107118	71047158	502	37550											
USP53	54532	broad.mit.edu	37	chr4	120189602	120189602	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaattgtcatttttacAtagttccaagtgagtgtcct	7	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120189602	C	C	120189602	1	2	21	0	1	0	0	0	0	0	0	0	17211	232	8	5		5	USP53	4	120189602	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	82484	120189602	70964674	503	37551											
BBS12	166379	broad.mit.edu	37	chr4	123664621	123664621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctggacatgtgcctatcGtttgtattatgctctaaaag	9	7	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123664621	A	A	123664621	3	1	21	1	0	0	0	0	1	0	0	0	1342	1145	40	4	1576	4	BBS12	4	123664621	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3475019	123664621	67489655	504	37552											
ANKRD50	57182	broad.mit.edu	37	chr4	125592087	125592087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgctaagaggggtgtaCggccattgttatctgtgtga	14	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125592087	A	A	125592087	3	1	21	1	0	0	0	0	1	0	0	0	677	536	19	3	1948	3	ANKRD50	4	125592087	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1927466	125592087	65562189	505	37553											
PCDH18	54510	broad.mit.edu	37	chr4	138451465	138451465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaaagccactttcagccCctttgggaatggtgatttct	9	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138451465	A	A	138451465	3	1	21	1	0	0	0	0	1	0	0	0	11607	623	22	2	1645	2	PCDH18	4	138451465	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	12859378	138451465	52702811	506	37554											
TBC1D9	23158	broad.mit.edu	37	chr4	141543672	141543672	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagtatgaggacatggagcTgtcgtccttggtgtcgtcgt	15	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141543672	A	A	141543672	3	1	21	1	0	0	0	0	1	0	0	0	15749	1580	55	5	326	5	TBC1D9	4	141543672	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	3092207	141543672	49610604	507	37555											
RNF150	57484	broad.mit.edu	37	chr4	141889041	141889041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacacctgtggtaagaggGgaaggaaggggcaataaagg	16	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141889041	T	T	141889041	1	4	21	0	1	0	0	0	0	0	0	0	13562	1247	43	2		2	RNF150	4	141889041	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	345369	141889041	49265235	508	37556											
INPP4B	8821	broad.mit.edu	37	chr4	143324217	143324217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttgttccctgtaacagCacaagcagacaactttgatt	6	12	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143324217	A	A	143324217	1	1	21	0	1	0	0	0	0	0	0	0	7823	725	25	3		3	INPP4B	4	143324217	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1435176	143324217	47830059	509	37557											
GAB1	2549	broad.mit.edu	37	chr4	144361103	144361103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaatcttcataattagtGccatgagactaagtgatatc	6	7	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144361103	T	T	144361103	1	4	21	0	1	0	0	0	0	0	0	0	6208	1334	46	3		3	GAB1	4	144361103	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1036886	144361103	46793173	510	37558											
ZNF827	152485	broad.mit.edu	37	chr4	146813424	146813424	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggatttgagattgtccttgcGagcacaccggaatggacaga	13	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146813424	C	C	146813424	3	2	21	1	0	0	0	0	1	0	0	0	18309	1058	37	4	2040	4	ZNF827	4	146813424	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2452321	146813424	44340852	511	37559											
FHDC1	85462	broad.mit.edu	37	chr4	153889280	153889280	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactcaagtcagtccctctaAtctcatctcccagcagcacc	5	17	5	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153889280	T	T	153889280	1	4	21	0	1	0	0	0	0	0	0	0	5933	116	4	5		5	FHDC1	4	153889280	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	7075856	153889280	37264996	512	37560											
FGB	2244	broad.mit.edu	37	chr4	155490450	155490450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgggaagaattactgtGgcctaccaggtaacgaacag	12	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155490450	T	T	155490450	3	4	21	1	0	0	0	0	1	0	0	0	5888	1348	47	2	971	2	FGB	4	155490450	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1601170	155490450	35663826	513	37561											
FGA	2243	broad.mit.edu	37	chr4	155510806	155510806	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctacaagtccccaggaagaGatggcactctcacagagatt	9	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155510806	A	A	155510806	1	1	21	0	1	0	0	0	0	0	0	0	5887	957	33	4		4	FGA	4	155510806	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	20356	155510806	35643470	514	37562											
TMEM144	55314	broad.mit.edu	37	chr4	159158747	159158747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccaatcatctacatcaagGaccacagcaaaagaaatgat	6	10	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159158747	T	T	159158747	3	4	21	1	0	0	0	0	1	0	0	0	16181	1174	41	3	660	3	TMEM144	4	159158747	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3647941	159158747	31995529	515	37563											
NPY5R	4889	broad.mit.edu	37	chr4	164272464	164272464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctgaagaaaattcagatGttcatgaattgagagtaaaa	8	4	2	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164272464	T	T	164272464	3	4	21	1	0	0	0	0	1	0	0	0	10705	1377	48	3	1041	3	NPY5R	4	164272464	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	5113717	164272464	26881812	516	37564											
MARCH1	55016	broad.mit.edu	37	chr4	164534532	164534532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggagctgtccctgttGttgggctgcttgcctggaga	15	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164534532	T	T	164534532	3	4	21	1	0	0	0	0	1	0	0	0	9390	1377	48	3	709	3	MARCH1	4	164534532	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	262068	164534532	26619744	517	37565											
TRIM60	166655	broad.mit.edu	37	chr4	165961467	165961467	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgaaattgctaaacaactCcagattaggaggagcaagag	10	7	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165961467	A	A	165961467	2	1	21	1	0	0	0	0	0	0	0	1	16660	842	30	3		3	TRIM60	4	165961467	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1426935	165961467	25192809	518	37566											
TLL1	7092	broad.mit.edu	37	chr4	166924717	166924717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcataagagaaaacatccaGccaggtgagaggcatagaat	10	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166924717	T	T	166924717	3	4	21	1	0	0	0	0	1	0	0	0	16068	962	34	3	829	3	TLL1	4	166924717	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	963250	166924717	24229559	519	37567											
GALNTL6	442117	broad.mit.edu	37	chr4	172735864	172735864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagcggagcccggggagCagcaggtaagtgccacccag	16	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172735864	A	A	172735864	3	1	21	1	0	0	0	0	1	0	0	0	6287	711	25	3	135	3	GALNTL6	4	172735864	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5811147	172735864	18418412	520	37568											
MORF4	10934	broad.mit.edu	37	chr4	174537206	174537206	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagataattgagtaataaagCaaggctcttctcattcagag	8	6	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174537206	T	T	174537206	3	4	21	1	0	0	0	0	1	0	0	0	9799	710	25	4	121	4	MORF4	4	174537206	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1801342	174537206	16617070	521	37569											
WDR17	116966	broad.mit.edu	37	chr4	177058693	177058693	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttaaattgtattgctggGggaacttcccgaaatggtgc	13	6	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177058693	T	T	177058693	2	4	21	1	0	0	0	0	0	0	0	1	17404	1219	43	2		2	WDR17	4	177058693	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2521487	177058693	14095583	522	37570											
ENPP6	133121	broad.mit.edu	37	chr4	185038113	185038113	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttattcagctcaatcacttTgtccatccagaaaatgtcgg	6	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185038113	C	C	185038113	3	2	21	1	0	0	0	0	1	0	0	0	5176	1821	63	5	587	5	ENPP6	4	185038113	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	7979420	185038113	6116163	523	37571											
SORBS2	8470	broad.mit.edu	37	chr4	186578535	186578535	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatccgtcctttgtggagtCtgtgcacagccccagacaga	10	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186578535	A	A	186578535	1	1	21	0	1	0	0	0	0	0	0	0	15042	928	32	3		3	SORBS2	4	186578535	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1540422	186578535	4575741	524	37572											
FAT1	2195	broad.mit.edu	37	chr4	187538097	187538097	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagcgccaaatgatggtcCcattgaaagaattaagaaat	8	8	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187538097	T	T	187538097	1	4	21	0	1	0	0	0	0	0	0	0	5746	638	22	4		4	FAT1	4	187538097	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	959562	187538097	3616179	525	37573											
TUBB4Q	56604	broad.mit.edu	37	chr4	190905503	190905504	+	Missense_Mutation	DNP	GG	TT	TT													cagatccacgagcacagcgcGggacacgtacctgccacctg					rs61746584		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	190905504	TT	TT	190905503	3	4	21	1	0	0	0	0	1	0	0	0	16885	1116	39	1	1127	1	TUBB4Q	4	190905503	Missense_Mutation	DNP	GG	TCGA-05-4424-01A-22D-1855-08	3367406	190905503	248773	526	37574											
EXOC3	11336	broad.mit.edu	37	chr5	464530	464530	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagccgtataagaaggtAagaaggtgggacctagttcc	12	6	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	464530	T	T	464530	1	4	21	0	1	0	0	0	0	0	0	0	5345	377	13	5		5	EXOC3	5	464530	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08		464530	180450730	527	37575											
ZDHHC11	79844	broad.mit.edu	37	chr5	814880	814881	+	Frame_Shift_Del	DEL	GT	-	-													aaacttacgaacttacccaaGtgtagatatactcggggcat							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	814881	-	-	814880	7	5	21	1	0	1	0	1	0	0	0	0	17727	1029	36	0	69	0	ZDHHC11	5	814880	Frame_Shift_Del	DEL	GT	TCGA-05-4424-01A-22D-1855-08	350350	814880	180100380	528	37576											
SLC6A19	340024	broad.mit.edu	37	chr5	1212464	1212464	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccctgtggactacttctgGtaccgagagacgctcaacat	9	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1212464	A	A	1212464	4	1	21	1	0	0	0	0	0	1	0	0	14796	1270	44	4	542	4	SLC6A19	5	1212464	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	397584	1212464	179702796	529	37577											
SLC6A18	348932	broad.mit.edu	37	chr5	1245997	1245997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtcaggagaagctctaccCgggctgggcgcgcgccgcct	16	15	2	1	rs75499032	byFrequency;by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1245997	T	T	1245997	3	4	21	1	0	0	0	0	1	0	0	0	14795	652	23	4	1737	4	SLC6A18	5	1245997	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	33533	1245997	179669263	530	37578											
ADCY2	108	broad.mit.edu	37	chr5	7520894	7520894	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcgtggtgtacaccatgcTgcccttcaacatgcgagacg	10	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7520894	A	A	7520894	3	1	21	1	0	0	0	0	1	0	0	0	294	1580	55	5	462	5	ADCY2	5	7520894	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	6274897	7520894	173394366	531	37579											
ADCY2	108	broad.mit.edu	37	chr5	7757550	7757550	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcttctctttttctttctCtcttctcctagcaatgcagc	4	13	5	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7757550	G	G	7757550	1	3	21	0	1	0	0	0	0	0	0	0	294	928	32	4		4	ADCY2	5	7757550	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	236656	7757550	173157710	532	37580											
SEMA5A	9037	broad.mit.edu	37	chr5	9054073	9054073	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttcaagggtaatagcatGttgctaacttgcccaccccc	7	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9054073	T	T	9054073	1	4	21	0	1	0	0	0	0	0	0	0	14150	1392	48	3		3	SEMA5A	5	9054073	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1296523	9054073	171861187	533	37581											
SEMA5A	9037	broad.mit.edu	37	chr5	9108268	9108268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacattgcagcctgcaCagtcaggcccattctcacag	7	16	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9108268	A	A	9108268	3	1	21	1	0	0	0	0	1	0	0	0	14150	478	17	3	1199	3	SEMA5A	5	9108268	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	54195	9108268	171806992	534	37582											
CMBL	134147	broad.mit.edu	37	chr5	10288614	10288614	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtcccaaggctcttgCcctacaaagaagtctggaac	12	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10288614	T	T	10288614	2	4	21	1	0	0	0	0	0	0	0	1	3608	726	26	4		4	CMBL	5	10288614	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1180346	10288614	170626646	535	37583											
DNAH5	1767	broad.mit.edu	37	chr5	13841843	13841843	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattcagttagttggaaaccTgtttcttgaatatttgcggc	9	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13841843	G	G	13841843	2	3	21	1	0	0	0	0	0	0	0	1	4644	1567	55	5		5	DNAH5	5	13841843	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	3553229	13841843	167073417	536	37584											
TRIO	7204	broad.mit.edu	37	chr5	14387461	14387461	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttttcctgttcagagctcaGagttggagtcaagtcgccac	11	10	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14387461	C	C	14387461	1	2	21	0	1	0	0	0	0	0	0	0	16677	957	33	4		4	TRIO	5	14387461	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	545618	14387461	166527799	537	37585											
ZNF622	90441	broad.mit.edu	37	chr5	16458777	16458777	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actaataaatagactaatatCtcaaattgaactaaaagaca	3	6	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16458777	G	G	16458777	1	3	21	0	1	0	0	0	0	0	0	0	18173	928	32	4		4	ZNF622	5	16458777	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2071316	16458777	164456483	538	37586											
CDH18	1016	broad.mit.edu	37	chr5	19473682	19473682	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagcagaaggattcctcaAggctgtgatgtcaaaggcct	12	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473682	T	T	19473682	3	4	21	1	0	0	0	0	1	0	0	0	3133	69	3	5	350	5	CDH18	5	19473682	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	3014905	19473682	161441578	539	37587											
CDH12	1010	broad.mit.edu	37	chr5	21783481	21783481	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttactaactttactcgcaAttatggagaaattatactgc	5	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21783481	G	G	21783481	3	3	21	1	0	0	0	0	1	0	0	0	3128	101	4	5	1025	5	CDH12	5	21783481	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	2309799	21783481	159131779	540	37588											
PRDM9	56979	broad.mit.edu	37	chr5	23522322	23522322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgtagaaaggtagatgCcaatttgatggtagatttca	11	3	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23522322	A	A	23522322	1	1	21	0	1	0	0	0	0	0	0	0	12569	754	26	3		3	PRDM9	5	23522322	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1738841	23522322	157392938	541	37589											
CDH10	1008	broad.mit.edu	37	chr5	24487964	24487964	+	Frame_Shift_Del	DEL	G	-	-													gagtcgtaggggggtgcggtGgggtcaagatcatgctcttt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24487964	-	-	24487964	7	5	21	1	0	1	0	1	0	0	0	0	3126	1335	47	0	195	0	CDH10	5	24487964	Frame_Shift_Del	DEL	G	TCGA-05-4424-01A-22D-1855-08	965642	24487964	156427296	542	37590											
CDH10	1008	broad.mit.edu	37	chr5	24491727	24491727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatggcgatcaaggcccCagtgctgaggccggcaggga	18	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24491727	A	A	24491727	3	1	21	1	0	0	0	0	1	0	0	0	3126	594	21	2	540	2	CDH10	5	24491727	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3763	24491727	156423533	543	37591											
CDH10	1008	broad.mit.edu	37	chr5	24498610	24498610	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaaaaacagccacgcgtGttgtctctttgggattgtct	9	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24498610	T	T	24498610	3	4	21	1	0	0	0	0	1	0	0	0	3126	1377	48	3	970	3	CDH10	5	24498610	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6883	24498610	156416650	544	37592											
CDH9	1007	broad.mit.edu	37	chr5	26881634	26881634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcttccccgccgccttcatCgttgtaggtcacaatgttgt	8	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881634	A	A	26881634	3	1	21	1	0	0	0	0	1	0	0	0	3147	884	31	3	392	3	CDH9	5	26881634	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2383024	26881634	154033626	545	37593											
CDH9	1007	broad.mit.edu	37	chr5	26885733	26885733	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagagcttactaagcagtatGaggacacagagtagaatcgc	11	8	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26885733	T	T	26885733	2	4	21	1	0	0	0	0	0	0	0	1	3147	1277	45	3		3	CDH9	5	26885733	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	4099	26885733	154029527	546	37594											
CDH6	1004	broad.mit.edu	37	chr5	31299542	31299542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtattcttaatgcatccCtttgcactcttaaatttcac	3	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31299542	T	T	31299542	1	4	21	0	1	0	0	0	0	0	0	0	3144	696	24	4		4	CDH6	5	31299542	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4413809	31299542	149615718	547	37595											
CDH6	1004	broad.mit.edu	37	chr5	31317988	31317988	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccacgggactgagcacGggggctctggttgccatcct	13	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31317988	T	T	31317988	2	4	21	1	0	0	0	0	0	0	0	1	3144	1103	39	1		1	CDH6	5	31317988	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	18446	31317988	149597272	548	37596											
RNASEN	29102	broad.mit.edu	37	chr5	31529071	31529071	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtatctaaatcctttccacCctctatagcccagcaccaat	3	15	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31529071	T	T	31529071	1	4	21	0	1	0	0	0	0	0	0	0	13528	638	22	4		4	RNASEN	5	31529071	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	211083	31529071	149386189	549	37597											
ADAMTS12	81792	broad.mit.edu	37	chr5	33751438	33751438	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agacttgagtaagaataggtCatgttttaataaaacaacca	7	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33751438	A	A	33751438	1	1	21	0	1	0	0	0	0	0	0	0	257	841	29	3		3	ADAMTS12	5	33751438	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2222367	33751438	147163822	550	37598											
SLC45A2	51151	broad.mit.edu	37	chr5	33947283	33947283	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacctccttttcttcctcGcggtggtactcagtaatgag	8	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33947283	A	A	33947283	2	1	21	1	0	0	0	0	0	0	0	1	14755	1074	38	4		4	SLC45A2	5	33947283	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	195845	33947283	146967977	551	37599											
SLC1A3	6507	broad.mit.edu	37	chr5	36677263	36677263	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcttaacgaagccatcatGagactggtagcagtaataat	8	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36677263	T	T	36677263	3	4	21	1	0	0	0	0	1	0	0	0	14546	1290	45	3	872	3	SLC1A3	5	36677263	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2729980	36677263	144237997	552	37600											
SLC1A3	6507	broad.mit.edu	37	chr5	36686153	36686153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtttttccctcctcccCaccctgcctgcagggatcgc	7	20	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36686153	A	A	36686153	1	1	21	0	1	0	0	0	0	0	0	0	14546	609	21	2		2	SLC1A3	5	36686153	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	8890	36686153	144229107	553	37601											
C9	735	broad.mit.edu	37	chr5	39288822	39288822	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacatcaaataaattgtcctCaccttcagaaattttttgtt	3	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39288822	A	A	39288822	1	1	21	0	1	0	0	0	0	0	0	0	2469	841	29	3		3	C9	5	39288822	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2602669	39288822	141626438	554	37602											
DAB2	1601	broad.mit.edu	37	chr5	39383025	39383025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagagatctggtcaaattGctgaccaaagtagtcaacat	9	7	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39383025	T	T	39383025	3	4	21	1	0	0	0	0	1	0	0	0	4251	1328	46	3	1296	3	DAB2	5	39383025	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	94203	39383025	141532235	555	37603											
C7	730	broad.mit.edu	37	chr5	40909773	40909773	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatcttttcaaatgaacgGgggtaatataaatgtaattt	8	4	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40909773	T	T	40909773	1	4	21	0	1	0	0	0	0	0	0	0	2400	1247	43	2		2	C7	5	40909773	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1526748	40909773	140005487	556	37604											
HEATR7B2	133558	broad.mit.edu	37	chr5	41007441	41007441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaacatacgcctatgtGgtgggtactaggactgctga	13	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41007441	T	T	41007441	3	4	21	1	0	0	0	0	1	0	0	0	7102	1348	47	2	1069	2	HEATR7B2	5	41007441	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	97668	41007441	139907819	557	37605											
C6	729	broad.mit.edu	37	chr5	41149636	41149636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagatcagaaaaaaacaGggggcacgtagccaatgtag	12	6	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41149636	T	T	41149636	1	4	21	0	1	0	0	0	0	0	0	0	2338	1015	35	2		2	C6	5	41149636	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	142195	41149636	139765624	558	37606											
C5orf51	285636	broad.mit.edu	37	chr5	41911007	41911007	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataattgattgaaaataaGgcctccctgtgtaagcagct	8	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41911007	T	T	41911007	1	4	21	0	1	0	0	0	0	0	0	0	2331	1015	35	2		2	C5orf51	5	41911007	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	761371	41911007	139004253	559	37607											
GHR	2690	broad.mit.edu	37	chr5	42719541	42719541	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttagcctttctttggtttCccaagagctacgtatttaat	6	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42719541	A	A	42719541	1	1	21	0	1	0	0	0	0	0	0	0	6435	870	30	3		3	GHR	5	42719541	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	808534	42719541	138195719	560	37608											
DEPDC1B	55789	broad.mit.edu	37	chr5	59899255	59899255	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagccacacgctcctctataGaggtctgcaaggccaaaggg	12	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59899255	C	C	59899255	3	2	21	1	0	0	0	0	1	0	0	0	4480	942	33	4	396	4	DEPDC1B	5	59899255	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	17179714	59899255	121016005	561	37609											
ADAMTS6	11174	broad.mit.edu	37	chr5	64506370	64506370	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgatgttcaaccaggtgtCtttatctgctatctggatgc	9	8	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64506370	T	T	64506370	1	4	21	0	1	0	0	0	0	0	0	0	270	928	32	4		4	ADAMTS6	5	64506370	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4607115	64506370	116408890	562	37610											
NLN	57486	broad.mit.edu	37	chr5	65108279	65108279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccctcccctttaactcctAgtgtaaaatattggtcacat	4	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65108279	T	T	65108279	1	4	21	0	1	0	0	0	0	0	0	0	10562	435	15	5		5	NLN	5	65108279	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	601909	65108279	115806981	563	37611											
CD180	4064	broad.mit.edu	37	chr5	66492277	66492277	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccttatttcctttttaaAgacactagatattgggatgc	6	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66492277	T	T	66492277	1	4	21	0	1	0	0	0	0	0	0	0	3002	87	3	5		5	CD180	5	66492277	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1383998	66492277	114422983	564	37612											
SLC30A5	64924	broad.mit.edu	37	chr5	68396736	68396736	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgttcacattgttcagttCatttttatattaaaacttgg	6	6	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68396736	T	T	68396736	2	4	21	1	0	0	0	0	0	0	0	1	14672	825	29	4		4	SLC30A5	5	68396736	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1904459	68396736	112518524	565	37613											
CCDC125	202243	broad.mit.edu	37	chr5	68609888	68609888	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatctacttgggagggaggaGaaaagaatctattaggggaa	14	3	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68609888	C	C	68609888	1	2	21	0	1	0	0	0	0	0	0	0	2787	957	33	4		4	CCDC125	5	68609888	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	213152	68609888	112305372	566	37614											
MCCC2	64087	broad.mit.edu	37	chr5	70892349	70892349	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgtcaagcactatgtgttGacatgtttattgagagccta	10	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70892349	C	C	70892349	1	2	21	0	1	0	0	0	0	0	0	0	9468	1305	45	4		4	MCCC2	5	70892349	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2282461	70892349	110022911	567	37615											
MAP1B	4131	broad.mit.edu	37	chr5	71495673	71495673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccgactctgatgttccccCggagactgaagagtgcccct	11	14	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71495673	A	A	71495673	3	1	21	1	0	0	0	0	1	0	0	0	9320	652	23	1	6509	1	MAP1B	5	71495673	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	603324	71495673	109419587	568	37616											
HMGCR	3156	broad.mit.edu	37	chr5	74646642	74646642	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggttcttgttcatgctcAcagtcgctggatagctgatc	10	10	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74646642	T	T	74646642	3	4	21	1	0	0	0	0	1	0	0	0	7298	159	6	5	839	5	HMGCR	5	74646642	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	3150969	74646642	106268618	569	37617											
SV2C	22987	broad.mit.edu	37	chr5	75469877	75469877	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgttgtgcatctacttcAacttgctctctataagaatc	5	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75469877	T	T	75469877	1	4	21	0	1	0	0	0	0	0	0	0	15537	145	5	5		5	SV2C	5	75469877	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	823235	75469877	105445383	570	37618											
SV2C	22987	broad.mit.edu	37	chr5	75591497	75591497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcataatgttatagggagCcagccattctccgggaacta	9	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75591497	A	A	75591497	1	1	21	0	1	0	0	0	0	0	0	0	15537	754	26	3		3	SV2C	5	75591497	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	121620	75591497	105323763	571	37619											
SPZ1	84654	broad.mit.edu	37	chr5	79616044	79616044	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtcctgatggccagcTctgctaagtcagctgagatg	11	11	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79616044	A	A	79616044	3	1	21	1	0	0	0	0	1	0	0	0	15245	1551	54	5	12	5	SPZ1	5	79616044	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	4024547	79616044	101299216	572	37620											
ZCCHC9	84240	broad.mit.edu	37	chr5	80604800	80604800	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaatgttttgtttgtggaGaaatggggcacctgtctaga	12	5	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80604800	C	C	80604800	3	2	21	1	0	0	0	0	1	0	0	0	17721	943	33	4	581	4	ZCCHC9	5	80604800	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	988756	80604800	100310460	573	37621											
XRCC4	7518	broad.mit.edu	37	chr5	82554470	82554470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctaaaatggctcctcaGgagaatcagcttcaagaaaa	8	9	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82554470	T	T	82554470	3	4	21	1	0	0	0	0	1	0	0	0	17582	991	35	2	889	2	XRCC4	5	82554470	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1949670	82554470	98360790	574	37622											
EDIL3	10085	broad.mit.edu	37	chr5	83402632	83402632	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattccaccttcaattccCagtgggcctgagcattctgg	8	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83402632	A	A	83402632	2	1	21	1	0	0	0	0	0	0	0	1	4955	581	21	2		2	EDIL3	5	83402632	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	848162	83402632	97512628	575	37623											
MEF2C	4208	broad.mit.edu	37	chr5	88056781	88056781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcagttatcagcagacCagccatctacctttggtact	8	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88056781	A	A	88056781	1	1	21	0	1	0	0	0	0	0	0	0	9550	609	21	2		2	MEF2C	5	88056781	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4654149	88056781	92858479	576	37624											
GPR98	84059	broad.mit.edu	37	chr5	90281424	90281424	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagctgtgattgaataagtAccaggaagatctttgctttt	10	5	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90281424	T	T	90281424	1	4	21	0	1	0	0	0	0	0	0	0	6787	406	14	5		5	GPR98	5	90281424	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2224643	90281424	90633836	577	37625											
FER	2241	broad.mit.edu	37	chr5	108436298	108436298	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgtatttgctacaatagaAgtcattttctttcatgaaac	6	6	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108436298	T	T	108436298	1	4	21	0	1	0	0	0	0	0	0	0	5870	87	3	5		5	FER	5	108436298	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	18154874	108436298	72478962	578	37626											
AQPEP	206338	broad.mit.edu	37	chr5	115351522	115351522	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtttggcactggaagctcAgctttagtctagcttggaag	13	7	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115351522	T	T	115351522	1	4	21	0	1	0	0	0	0	0	0	0	836	203	7	5		5	AQPEP	5	115351522	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	6915224	115351522	65563738	579	37627											
DMXL1	1657	broad.mit.edu	37	chr5	118479675	118479675	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaaaagtttatgaaaGcattttgcataaaatctata	4	3	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118479675	C	C	118479675	1	2	21	0	1	0	0	0	0	0	0	0	4634	986	34	4		4	DMXL1	5	118479675	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3128153	118479675	62435585	580	37628											
MEGF10	84466	broad.mit.edu	37	chr5	126769302	126769302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtttatagtgatgtcctGttgcagttgaaggcaaaaga	11	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126769302	T	T	126769302	1	4	21	0	1	0	0	0	0	0	0	0	9553	1392	48	3		3	MEGF10	5	126769302	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	8289627	126769302	54145958	581	37629											
FBN2	2201	broad.mit.edu	37	chr5	127599053	127599053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcttccctgcagtggggGgtggcctgaactcactcagg	13	12	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127599053	T	T	127599053	1	4	21	0	1	0	0	0	0	0	0	0	5760	1247	43	2		2	FBN2	5	127599053	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	829751	127599053	53316207	582	37630											
RAPGEF6	51735	broad.mit.edu	37	chr5	130845995	130845995	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattcttattgtgaacacaTatatttcttaccaatgtcat	3	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130845995	C	C	130845995	1	2	21	0	1	0	0	0	0	0	0	0	13156	1421	49	5		5	RAPGEF6	5	130845995	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	3246942	130845995	50069265	583	37631											
FSTL4	23105	broad.mit.edu	37	chr5	132763452	132763452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgttgagaagccctacaGggttgcaacttctgccatca	9	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132763452	T	T	132763452	1	4	21	0	1	0	0	0	0	0	0	0	6139	1015	35	2		2	FSTL4	5	132763452	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1917457	132763452	48151808	584	37632											
CDKN2AIPNL	91368	broad.mit.edu	37	chr5	133738626	133738630	+	Intron	DEL	AAAAG	-	-													ttagctttgatgctgggaaaAaaagaaaagaaaaggttaca							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133738630	-	-	133738626	6	5	21	0	1	1	0	1	0	0	0	0	3193	29	1	0		0	CDKN2AIPNL	5	133738626	Intron	DEL	AAAAG	TCGA-05-4424-01A-22D-1855-08	975174	133738626	47176634	585	37633											
CATSPER3	347732	broad.mit.edu	37	chr5	134344818	134344818	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatggacctgtccctcacCcggcccaactctcctccctg	7	20	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134344818	G	G	134344818	1	3	21	0	1	0	0	0	0	0	0	0	2715	638	22	4		4	CATSPER3	5	134344818	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	606192	134344818	46570442	586	37634											
FAM53C	51307	broad.mit.edu	37	chr5	137677475	137677475	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtcctgaatccaaatcatGatggatattctctctttctt	6	9	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137677475	C	C	137677475	1	2	21	0	1	0	0	0	0	0	0	0	5632	1305	45	4		4	FAM53C	5	137677475	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3332657	137677475	43237785	587	37635											
CXXC5	51523	broad.mit.edu	37	chr5	139060297	139060297	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgtcggaacaagagcggTatcatcagtgagcccctcaa	12	11	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139060297	C	C	139060297	2	2	21	1	0	0	0	0	0	0	0	1	4132	1625	57	5		5	CXXC5	5	139060297	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	1382822	139060297	41854963	588	37636											
HARS	3035	broad.mit.edu	37	chr5	140053968	140053968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccattccactgctcccCgagtgcctagtttcctctag	6	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140053968	A	A	140053968	1	1	21	0	1	0	0	0	0	0	0	0	7025	667	23	1		1	HARS	5	140053968	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	993671	140053968	40861292	589	37637											
PCDHA10	56139	broad.mit.edu	37	chr5	140237074	140237074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacggtgtctgcgtgggacGcggacgcgcaggagaacgcc	17	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140237074	T	T	140237074	3	4	21	1	0	0	0	0	1	0	0	0	11614	1087	38	3	1443	3	PCDHA10	5	140237074	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	183106	140237074	40678186	590	37638											
PCDHA11	56138	broad.mit.edu	37	chr5	140250183	140250183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggtggagcggcggttgGgcgaccgcgcgctgtcgagc	20	12	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140250183	T	T	140250183	3	4	21	1	0	0	0	0	1	0	0	0	11615	1232	43	2	1497	2	PCDHA11	5	140250183	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	13109	140250183	40665077	591	37639											
PCDHA12	56137	broad.mit.edu	37	chr5	140256515	140256515	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggacgcggacgcgcagaaGaacgcgctggtgtcctactc	15	12	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140256515	C	C	140256515	3	2	21	1	0	0	0	0	1	0	0	0	11616	933	33	4	1460	4	PCDHA12	5	140256515	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6332	140256515	40658745	592	37640											
PCDHB10	56126	broad.mit.edu	37	chr5	140574115	140574115	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctgcacttgctcctggtgGacggcttctcccagccctac	10	17	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140574115	A	A	140574115	3	1	21	1	0	0	0	0	1	0	0	0	11629	1174	41	4	1992	4	PCDHB10	5	140574115	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	317600	140574115	40341145	593	37641											
PCDHB10	56126	broad.mit.edu	37	chr5	140574131	140574131	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggacggcttctcccagcCctacctgcctctcccggagg	12	17	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140574131	T	T	140574131	3	4	21	1	0	0	0	0	1	0	0	0	11629	623	22	4	2008	4	PCDHB10	5	140574131	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	16	140574131	40341129	594	37642											
PCDHB11	56125	broad.mit.edu	37	chr5	140579376	140579376	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagggacacgcactcagcAgataaggcaagtcctgcttc	10	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140579376	T	T	140579376	3	4	21	1	0	0	0	0	1	0	0	0	11630	188	7	5	31	5	PCDHB11	5	140579376	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	5245	140579376	40335884	595	37643											
PCDHGB3	56102	broad.mit.edu	37	chr5	140750198	140750198	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattctttaccgtgagcccCgaaaatgggaacttacttgt	8	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140750198	A	A	140750198	2	1	21	1	0	0	0	0	0	0	0	1	11658	639	23	1		1	PCDHGB3	5	140750198	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	170822	140750198	40165062	596	37644											
JAKMIP2	9832	broad.mit.edu	37	chr5	147028044	147028044	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcgcaaatcctacaaAgaaaaattaaaatgggtatt	5	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147028044	T	T	147028044	1	4	21	0	1	0	0	0	0	0	0	0	8011	87	3	5		5	JAKMIP2	5	147028044	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	6277846	147028044	33887216	597	37645											
FBXO38	81545	broad.mit.edu	37	chr5	147807061	147807061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggacggtgaacagcggcgGctcttccgagcctagcccta	13	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147807061	T	T	147807061	3	4	21	1	0	0	0	0	1	0	0	0	5803	1203	42	3	2258	3	FBXO38	5	147807061	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	779017	147807061	33108199	598	37646											
AFAP1L1	134265	broad.mit.edu	37	chr5	148709278	148709278	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgagccgaggaggatgcccgGaggtacttggtagaaaaaga	16	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148709278	T	T	148709278	2	4	21	1	0	0	0	0	0	0	0	1	354	1161	41	3		3	AFAP1L1	5	148709278	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	902217	148709278	32205982	599	37647											
AFAP1L1	134265	broad.mit.edu	37	chr5	148715350	148715350	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctttctatggaacttcaCccaaaaccaaaaaatcaact	2	14	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148715350	T	T	148715350	1	4	21	0	1	0	0	0	0	0	0	0	354	522	18	4		4	AFAP1L1	5	148715350	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6072	148715350	32199910	600	37648											
CCDC69	26112	broad.mit.edu	37	chr5	150578765	150578765	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctaacccttcctctgaggGatgggaatgacacgcccaga	10	13	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150578765	A	A	150578765	1	1	21	0	1	0	0	0	0	0	0	0	2869	1189	41	4		4	CCDC69	5	150578765	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1863415	150578765	30336495	601	37649											
ITK	3702	broad.mit.edu	37	chr5	156671559	156671559	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgaaatgactgggaaCgcattaataaataatacatt	6	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156671559	A	A	156671559	1	1	21	0	1	0	0	0	0	0	0	0	7979	551	19	3		3	ITK	5	156671559	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6092794	156671559	24243701	602	37650											
GABRG2	2566	broad.mit.edu	37	chr5	161495169	161495169	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtggggggaaggtgtgGggaggggtaactcgggagac	24	3	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161495169	A	A	161495169	1	1	21	0	1	0	0	0	0	0	0	0	6232	1247	43	4		4	GABRG2	5	161495169	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	4823610	161495169	19420091	603	37651											
GABRG2	2566	broad.mit.edu	37	chr5	161530945	161530945	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatggaagcgaagttctgttGaagtgggcgacacaagatcc	13	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161530945	T	T	161530945	4	4	21	1	0	0	0	0	0	1	0	0	6232	1291	45	3	828	3	GABRG2	5	161530945	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	35776	161530945	19384315	604	37652											
GABRG2	2566	broad.mit.edu	37	chr5	161576503	161576503	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacttgagagagactcaagtCtgtttctattttctgtgtca	8	7	5	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161576503	A	A	161576503	1	1	21	0	1	0	0	0	0	0	0	0	6232	928	32	3		3	GABRG2	5	161576503	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	45558	161576503	19338757	605	37653											
DOCK2	1794	broad.mit.edu	37	chr5	169111246	169111246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtattcccggatctcctcatCccccacccatagcctctatg	5	18	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169111246	A	A	169111246	3	1	21	1	0	0	0	0	1	0	0	0	4727	855	30	3	683	3	DOCK2	5	169111246	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	7534743	169111246	11804014	606	37654											
DOCK2	1794	broad.mit.edu	37	chr5	169116294	169116294	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggggcagccggggcttccCtaaggagattgagatgctca	15	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169116294	G	G	169116294	3	3	21	1	0	0	0	0	1	0	0	0	4727	681	24	4	834	4	DOCK2	5	169116294	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5048	169116294	11798966	607	37655											
DOCK2	1794	broad.mit.edu	37	chr5	169141005	169141005	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggcatggagccttggcttGgggcagtaaccaagtgttgt	16	7	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169141005	C	C	169141005	1	2	21	0	1	0	0	0	0	0	0	0	4727	1363	47	4		4	DOCK2	5	169141005	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	24711	169141005	11774255	608	37656											
STK10	6793	broad.mit.edu	37	chr5	171488231	171488231	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgagcctcttcatggcCagctccaggtcctccttctg	11	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171488231	G	G	171488231	2	3	21	1	0	0	0	0	0	0	0	1	15404	581	21	4		4	STK10	5	171488231	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	2347226	171488231	9427029	609	37657											
STC2	8614	broad.mit.edu	37	chr5	172750445	172750445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacttgccctgagaacacaCaggccggggaagggagagag	16	9	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172750445	T	T	172750445	1	4	21	0	1	0	0	0	0	0	0	0	15394	493	17	4		4	STC2	5	172750445	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1262214	172750445	8164815	610	37658											
DRD1	1812	broad.mit.edu	37	chr5	174870079	174870079	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcccagtcccgtccatGgcagaggtgttcagagtcct	11	14	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174870079	T	T	174870079	2	4	21	1	0	0	0	0	0	0	0	1	4796	1335	47	2		2	DRD1	5	174870079	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2119634	174870079	6045181	611	37659											
ZNF354B	117608	broad.mit.edu	37	chr5	178293996	178293996	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggactctcatttaccaaaccAaaagtcatctccctgttgca	5	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178293996	T	T	178293996	2	4	21	1	0	0	0	0	0	0	0	1	17991	117	5	5		5	ZNF354B	5	178293996	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	3423917	178293996	2621264	612	37660											
ADAMTS2	9509	broad.mit.edu	37	chr5	178700128	178700128	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaccaaggaaggggaacagCgaggagaccccctcagggag	16	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178700128	T	T	178700128	1	4	21	0	1	0	0	0	0	0	0	0	265	783	27	4		4	ADAMTS2	5	178700128	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	406132	178700128	2215132	613	37661											
MAML1	9794	broad.mit.edu	37	chr5	179201511	179201511	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccatggctcccatgagctCagcagctgccgtggggtcct	13	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179201511	T	T	179201511	3	4	21	1	0	0	0	0	1	0	0	0	9297	838	29	4	2702	4	MAML1	5	179201511	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	501383	179201511	1713749	614	37662											
FLT4	2324	broad.mit.edu	37	chr5	180047313	180047313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgcgtgggccggctgcGgggaggggacagggaggagt	23	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180047313	A	A	180047313	1	1	21	0	1	0	0	0	0	0	0	0	6002	1131	39	4		4	FLT4	5	180047313	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	845802	180047313	867947	615	37663											
FLT4	2324	broad.mit.edu	37	chr5	180056964	180056964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgtgcaccaggaaggGgttggaaaggaagtcctggt	17	5	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180056964	T	T	180056964	3	4	21	1	0	0	0	0	1	0	0	0	6002	1232	43	2	3548	2	FLT4	5	180056964	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	9651	180056964	858296	616	37664											
BTNL3	10917	broad.mit.edu	37	chr5	180419860	180419860	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttgtccaggccttggtgGgggaggacgccgtgttctcc	16	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180419860	A	A	180419860	3	1	21	1	0	0	0	0	1	0	0	0	1576	1232	43	4	103	4	BTNL3	5	180419860	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	362896	180419860	495400	617	37665											
EXOC2	55770	broad.mit.edu	37	chr6	576740	576740	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaagacccagtggcagTggagggagatacttactgtc	12	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	576740	A	A	576740	1	1	21	0	1	0	0	0	0	0	0	0	5344	1711	59	5		5	EXOC2	6	576740	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08		576740	170538327	618	37666											
CDYL	9425	broad.mit.edu	37	chr6	4735052	4735052	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgagcagtgagcaaagcGgggcacagcagcctcccgct	14	14	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4735052	C	C	4735052	3	2	21	1	0	0	0	0	1	0	0	0	3215	1131	39	4		4	CDYL	6	4735052	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4158312	4735052	166380015	619	37667											
SLC17A2	10246	broad.mit.edu	37	chr6	25921630	25921630	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtttctgggctccattgaTacacagaggcctgggggaaa	14	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25921630	C	C	25921630	3	2	21	1	0	0	0	0	1	0	0	0	14530	1406	49	5	1091	5	SLC17A2	6	25921630	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	21186578	25921630	145193437	620	37668											
HIST1H1A	3024	broad.mit.edu	37	chr6	26020628	26020628	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttagcgtcttctatcatCcaatcactgcactttacaca	3	12	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26020628	T	T	26020628	1	4	21	0	1	0	0	0	0	0	0	0	7189	870	30	4		4	HIST1H1A	6	26020628	5'Flank	SNP	C	TCGA-05-4424-01A-22D-1855-08	98998	26020628	145094439	621	37669											
HIST1H1D	3007	broad.mit.edu	37	chr6	26234851	26234851	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgttgagtttgaaggagCcagaagcaccggtacctttg	12	8	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26234851	G	G	26234851	3	3	21	1	0	0	0	0	1	0	0	0	7192	739	26	4	358	4	HIST1H1D	6	26234851	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	214223	26234851	144880216	622	37670											
HIST1H3I	8354	broad.mit.edu	37	chr6	27839642	27839642	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggggctctgaaaagagCcttttggggttggacagact	15	6	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27839642	G	G	27839642	1	3	21	0	1	0	0	0	0	0	0	0	7230	754	26	4		4	HIST1H3I	6	27839642	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	1604791	27839642	143275425	623	37671											
SCAND3	114821	broad.mit.edu	37	chr6	28539729	28539729	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcttgcttgttaatttgtCtaatctaggttggattgatg	9	5	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28539729	G	G	28539729	3	3	21	1	0	0	0	0	1	0	0	0	13988	913	32	4	44	4	SCAND3	6	28539729	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	700087	28539729	142575338	624	37672											
TRIM27	5987	broad.mit.edu	37	chr6	28872184	28872184	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccagaatccattctggGgggctgaggttactccacct	11	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28872184	C	C	28872184	3	2	21	1	0	0	0	0	1	0	0	0	16625	1232	43	4	340	4	TRIM27	6	28872184	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	332455	28872184	142242883	625	37673											
OR10C1	442194	broad.mit.edu	37	chr6	29408120	29408120	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctcttctttggcgccacgGagtgctgcctcctggcagcc	11	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29408120	T	T	29408120	4	4	21	1	0	0	0	0	0	1	0	0	10992	1175	41	3	330	3	OR10C1	6	29408120	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	535936	29408120	141706947	626	37674											
OR2H1	26716	broad.mit.edu	37	chr6	29429580	29429580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcccccatgggcttcctcCttctgggcttctctgaacac	8	17	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29429580	A	A	29429580	3	1	21	1	0	0	0	0	1	0	0	0	11095	681	24	2	36	2	OR2H1	6	29429580	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	21460	29429580	141685487	627	37675											
OR2H1	26716	broad.mit.edu	37	chr6	29429884	29429884	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccactgagtgcatcctccTgacagtgatggcctttgacc	10	13	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29429884	A	A	29429884	3	1	21	1	0	0	0	0	1	0	0	0	11095	1580	55	5	340	5	OR2H1	6	29429884	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	304	29429884	141685183	628	37676											
TRIM40	135644	broad.mit.edu	37	chr6	30105048	30105048	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaccaccagaagagggtgTgcaggttctgtgaggagagc	15	9	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30105048	A	A	30105048	3	1	21	1	0	0	0	0	1	0	0	0	16639	1696	59	5	237	5	TRIM40	6	30105048	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	675164	30105048	141010019	629	37677											
BAT5	7920	broad.mit.edu	37	chr6	31656113	31656113	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagcagtgggaagggagaGctcagagggagacgggtgac	20	6	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31656113	A	A	31656113	1	1	21	0	1	0	0	0	0	0	0	0	1329	986	34	4		4	BAT5	6	31656113	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1551065	31656113	139458954	630	37678											
SKIV2L	6499	broad.mit.edu	37	chr6	31933555	31933555	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctttctgttctcctctgtCccaggtcttgtttgccacag	7	14	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31933555	T	T	31933555	1	4	21	0	1	0	0	0	0	0	0	0	14472	870	30	4		4	SKIV2L	6	31933555	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	277442	31933555	139181512	631	37679											
SKIV2L	6499	broad.mit.edu	37	chr6	31935478	31935478	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acccccctctcctggcctctCtgaccacccccaggtctcct	5	23	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31935478	G	G	31935478	1	3	21	0	1	0	0	0	0	0	0	0	14472	928	32	4		4	SKIV2L	6	31935478	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1923	31935478	139179589	632	37680											
NOTCH4	4855	broad.mit.edu	37	chr6	32178753	32178753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatatacaaagataagtgGggggccgggcgccatggctt	17	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32178753	T	T	32178753	1	4	21	0	1	0	0	0	0	0	0	0	10646	1247	43	2		2	NOTCH4	6	32178753	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	243275	32178753	138936314	633	37681											
COL11A2	1302	broad.mit.edu	37	chr6	33143540	33143540	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaatgggcaacagtgaggCtgaggagggctagaggggtc	19	5	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33143540	T	T	33143540	1	4	21	0	1	0	0	0	0	0	0	0	3700	812	28	4		4	COL11A2	6	33143540	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	964787	33143540	137971527	634	37682											
NUDT3	11165	broad.mit.edu	37	chr6	34360149	34360149	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcatcatcctccgggcCcgggtgggggtgcggtgcgg	18	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34360149	A	A	34360149	1	1	21	0	1	0	0	0	0	0	0	0	10835	638	22	2		2	NUDT3	6	34360149	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	1216609	34360149	136754918	635	37683											
SPDEF	25803	broad.mit.edu	37	chr6	34507012	34507012	+	Intron	DEL	G	-	-													ctggccctgcagcgccccttGggcaccctgctcacccttct							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34507012	-	-	34507012	6	5	21	0	1	1	0	1	0	0	0	0	15142	1363	47	0		0	SPDEF	6	34507012	Intron	DEL	G	TCGA-05-4424-01A-22D-1855-08	146863	34507012	136608055	636	37684											
SCUBE3	222663	broad.mit.edu	37	chr6	35205485	35205485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggactgcttggctgtaCttgtgaggggatgggggttg	19	4	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35205485	A	A	35205485	1	1	21	0	1	0	0	0	0	0	0	0	14059	580	20	3		3	SCUBE3	6	35205485	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	698473	35205485	135909582	637	37685											
PI16	221476	broad.mit.edu	37	chr6	36930959	36930959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctccatggcaacagaggctCcaccttgcgtaacaactgag	9	14	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36930959	T	T	36930959	3	4	21	1	0	0	0	0	1	0	0	0	11964	855	30	4	859	4	PI16	6	36930959	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1725474	36930959	134184108	638	37686											
TREML4	285852	broad.mit.edu	37	chr6	41204200	41204200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctggcccaagtccatcCtcctttctccttcttccctg	4	19	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41204200	A	A	41204200	1	1	21	0	1	0	0	0	0	0	0	0	16598	696	24	2		2	TREML4	6	41204200	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4273241	41204200	129910867	639	37687											
UBR2	23304	broad.mit.edu	37	chr6	42613255	42613255	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgctacagatgaaatcaAgcgagagattatccatcagt	8	7	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42613255	G	G	42613255	3	3	21	1	0	0	0	0	1	0	0	0	17028	72	3	5	2564	5	UBR2	6	42613255	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1409055	42613255	128501812	640	37688											
UBR2	23304	broad.mit.edu	37	chr6	42625764	42625764	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatttttctgccgtagaaCctggtgaagcgccaaaaaat	8	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42625764	T	T	42625764	3	4	21	1	0	0	0	0	1	0	0	0	17028	507	18	4	3127	4	UBR2	6	42625764	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	12509	42625764	128489303	641	37689											
SLC29A1	2030	broad.mit.edu	37	chr6	44197570	44197570	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccccagcctgaccctcaCtgtgtcctgcacccccttgg	8	20	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44197570	G	G	44197570	1	3	21	0	1	0	0	0	0	0	0	0	14648	580	20	4		4	SLC29A1	6	44197570	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1571806	44197570	126917497	642	37690											
GPR115	221393	broad.mit.edu	37	chr6	47684471	47684471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggaggtatctagaagagCggtatgaaaataacagcagg	13	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47684471	A	A	47684471	1	1	21	0	1	0	0	0	0	0	0	0	6697	783	27	3		3	GPR115	6	47684471	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3486901	47684471	123430596	643	37691											
GCM1	8521	broad.mit.edu	37	chr6	52993253	52993253	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgctggatttggccataaTgggggacagccagttttggc	14	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52993253	C	C	52993253	2	2	21	1	0	0	0	0	0	0	0	1	6359	1451	51	5		5	GCM1	6	52993253	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	5308782	52993253	118121814	644	37692											
FAM83B	222584	broad.mit.edu	37	chr6	54735190	54735190	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataccaagaatttcttgtccAggaacgagtttcagactttc	7	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54735190	T	T	54735190	3	4	21	1	0	0	0	0	1	0	0	0	5687	188	7	5	148	5	FAM83B	6	54735190	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1741937	54735190	116379877	645	37693											
FAM83B	222584	broad.mit.edu	37	chr6	54792420	54792420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccagaaagtgatgtacGgttcttacaggtaagatcat	10	7	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54792420	T	T	54792420	3	4	21	1	0	0	0	0	1	0	0	0	5687	1116	39	1	734	1	FAM83B	6	54792420	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	57230	54792420	116322647	646	37694											
GFRAL	389400	broad.mit.edu	37	chr6	55192317	55192317	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaagaaacgcatctgcCtttttttccaggtgaactgc	9	10	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55192317	G	G	55192317	1	3	21	0	1	0	0	0	0	0	0	0	6415	696	24	4		4	GFRAL	6	55192317	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	399897	55192317	115922750	647	37695											
COL21A1	81578	broad.mit.edu	37	chr6	56006587	56006587	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtgtgtgtttaccttgTcaccatctcgccctggttct	8	11	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56006587	C	C	56006587	3	2	21	1	0	0	0	0	1	0	0	0	3712	1667	58	5	1411	5	COL21A1	6	56006587	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	814270	56006587	115108480	648	37696											
DST	667	broad.mit.edu	37	chr6	56380134	56380134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattacacagaccagaacaCggtattctaaaatgccttaa	5	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56380134	A	A	56380134	1	1	21	0	1	0	0	0	0	0	0	0	4823	551	19	3		3	DST	6	56380134	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	373547	56380134	114734933	649	37697											
DST	667	broad.mit.edu	37	chr6	56391360	56391360	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgttcttagcttcctttttCagttcctgaaaacatacaaa	4	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56391360	T	T	56391360	2	4	21	1	0	0	0	0	0	0	0	1	4823	813	29	4		4	DST	6	56391360	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	11226	56391360	114723707	650	37698											
DST	667	broad.mit.edu	37	chr6	56481202	56481202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaggtttctctggaaagCctcatacacggtcaattctg	8	10	5	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56481202	A	A	56481202	1	1	21	0	1	0	0	0	0	0	0	0	4823	739	26	3		3	DST	6	56481202	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	89842	56481202	114633865	651	37699											
DST	667	broad.mit.edu	37	chr6	56510808	56510808	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcttgagaaaacaaaaaActttaatgtgaagcaaaaat	5	4	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56510808	G	G	56510808	1	3	21	0	1	0	0	0	0	0	0	0	4823	58	2	5		5	DST	6	56510808	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	29606	56510808	114604259	652	37700											
COL19A1	1310	broad.mit.edu	37	chr6	70647965	70647965	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagctccgggttcaccTgggcagaaagggcataaagg	15	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70647965	A	A	70647965	2	1	21	1	0	0	0	0	0	0	0	1	3708	1567	55	5		5	COL19A1	6	70647965	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	14137157	70647965	100467102	653	37701											
COL19A1	1310	broad.mit.edu	37	chr6	70850769	70850769	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaatctgagtttggcctaTagggtttatccacaccccgg	12	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70850769	C	C	70850769	1	2	21	0	1	0	0	0	0	0	0	0	3708	1421	49	5		5	COL19A1	6	70850769	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	202804	70850769	100264298	654	37702											
COL19A1	1310	broad.mit.edu	37	chr6	70894575	70894575	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgcagagttagaaatattAatcctttttttctttatagg	6	4	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70894575	C	C	70894575	1	2	21	0	1	0	0	0	0	0	0	0	3708	377	13	5		5	COL19A1	6	70894575	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	43806	70894575	100220492	655	37703											
RIMS1	22999	broad.mit.edu	37	chr6	72806789	72806789	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaaagtttgctgatgggtGcggtcatctctgctcctatt	10	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72806789	A	A	72806789	3	1	21	1	0	0	0	0	1	0	0	0	13478	1319	46	4	393	4	RIMS1	6	72806789	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1912214	72806789	98308278	656	37704											
CD109	135228	broad.mit.edu	37	chr6	74475751	74475751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaactatactgagtactgGagcggatctaacagtggaaa	11	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74475751	T	T	74475751	3	4	21	1	0	0	0	0	1	0	0	0	2993	1183	41	3	1248	3	CD109	6	74475751	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1668962	74475751	96639316	657	37705											
COL12A1	1303	broad.mit.edu	37	chr6	75848326	75848326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggacaaaaacatacccaCgcaaaagtaagtctccactt	6	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75848326	A	A	75848326	1	1	21	0	1	0	0	0	0	0	0	0	3701	551	19	3		3	COL12A1	6	75848326	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1372575	75848326	95266741	658	37706											
IMPG1	3617	broad.mit.edu	37	chr6	76728357	76728357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagctggaactgttcgcCgtaagggtttatgtcctatc	12	8	0	1	rs146186081	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76728357	A	A	76728357	1	1	21	0	1	0	0	0	0	0	0	0	7798	667	23	1		1	IMPG1	6	76728357	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	880031	76728357	94386710	659	37707											
TBX18	9096	broad.mit.edu	37	chr6	85446986	85446987	+	Missense_Mutation	DNP	GG	TT	TT													cacaggcagaatagtcagcaGgggccagactacacagctgg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	85446987	TT	TT	85446986	3	4	21	1	0	0	0	0	1	0	0	0	15775	1000	35	2	586	2	TBX18	6	85446986	Missense_Mutation	DNP	GG	TCGA-05-4424-01A-22D-1855-08	8718629	85446986	85668081	660	37708											
TBX18	9096	broad.mit.edu	37	chr6	85469919	85469919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatcaaacaggcactagCctgcaaaatcctagtgtttt	7	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85469919	A	A	85469919	1	1	21	0	1	0	0	0	0	0	0	0	15775	754	26	3		3	TBX18	6	85469919	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	22933	85469919	85645148	661	37709											
ZNF292	23036	broad.mit.edu	37	chr6	87966507	87966507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgaatgtggagataatGttaaaacatcatccaatctt	6	5	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87966507	T	T	87966507	3	4	21	1	0	0	0	0	1	0	0	0	17952	1377	48	3	3190	3	ZNF292	6	87966507	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2496588	87966507	83148560	662	37710											
ORC3L	23595	broad.mit.edu	37	chr6	88311462	88311463	+	Intron	DNP	AT	TA	TA													gatctataacttatactattAtatgaaaaaagaaactgact							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	88311463	TA	TA	88311462	1	4	21	0	1	0	0	0	0	0	0	0	11357	464	16	5		5	ORC3L	6	88311462	Intron	DNP	AT	TCGA-05-4424-01A-22D-1855-08	344955	88311462	82803605	663	37711											
EPHA7	2045	broad.mit.edu	37	chr6	93964513	93964513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttactggaatttttccaCcctgttataaaaagaaatga	5	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93964513	A	A	93964513	3	1	21	1	0	0	0	0	1	0	0	0	5214	521	18	3	628	3	EPHA7	6	93964513	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5653051	93964513	77150554	664	37712											
EPHA7	2045	broad.mit.edu	37	chr6	93974360	93974360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacaccaaaatgatggtcCcagctacagcaaccacagca	7	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93974360	A	A	93974360	3	1	21	1	0	0	0	0	1	0	0	0	5214	623	22	2	1342	2	EPHA7	6	93974360	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	9847	93974360	77140707	665	37713											
C6orf167	253714	broad.mit.edu	37	chr6	97627245	97627245	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagcaaatagctttccataGatacccccatcctccccaaa	3	16	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97627245	A	A	97627245	1	1	21	0	1	0	0	0	0	0	0	0	2365	957	33	4		4	C6orf167	6	97627245	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3652885	97627245	73487822	666	37714											
SIM1	6492	broad.mit.edu	37	chr6	100838170	100838170	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcatagtaaatgctgGtaatggggtattaaactata	11	4	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100838170	A	A	100838170	1	1	21	0	1	0	0	0	0	0	0	0	14436	1276	44	4		4	SIM1	6	100838170	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	3210925	100838170	70276897	667	37715											
SIM1	6492	broad.mit.edu	37	chr6	100901733	100901733	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgagccctgtggagacacAgaagcatcctgtagccactg	12	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100901733	T	T	100901733	1	4	21	0	1	0	0	0	0	0	0	0	14436	203	7	5		5	SIM1	6	100901733	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	63563	100901733	70213334	668	37716											
LIN28B	389421	broad.mit.edu	37	chr6	105406060	105406060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttttgcgcggaactggcCactgtaagtggttcaatgtg	14	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105406060	A	A	105406060	3	1	21	1	0	0	0	0	1	0	0	0	8879	594	21	2	103	2	LIN28B	6	105406060	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4504327	105406060	65709007	669	37717											
SOBP	55084	broad.mit.edu	37	chr6	107956574	107956574	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggctgccatggcaccGtgcatcatctcctcgcccat	10	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107956574	C	C	107956574	2	2	21	1	0	0	0	0	0	0	0	1	15026	1132	40	4		4	SOBP	6	107956574	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2550514	107956574	63158493	670	37718											
NR2E1	7101	broad.mit.edu	37	chr6	108502825	108502825	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcccttcaagatgaggctcAgctaacgctcaacagctaca	8	13	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108502825	T	T	108502825	3	4	21	1	0	0	0	0	1	0	0	0	10720	188	7	5	995	5	NR2E1	6	108502825	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	546251	108502825	62612242	671	37719											
C6orf182	285753	broad.mit.edu	37	chr6	109471397	109471397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaatatacaaagagaatGgttctcaacgtagagcgaga	10	6	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109471397	T	T	109471397	3	4	21	1	0	0	0	0	1	0	0	0	2369	1348	47	2	427	2	C6orf182	6	109471397	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	968572	109471397	61643670	672	37720											
C6orf182	285753	broad.mit.edu	37	chr6	109484117	109484117	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcagctttcatccaataCgagttcataatcttcaaatg	5	10	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109484117	T	T	109484117	4	4	21	1	0	0	0	0	0	1	0	0	2369	528	19	4	1365	4	C6orf182	6	109484117	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	12720	109484117	61630950	673	37721											
AKD1	221264	broad.mit.edu	37	chr6	109954510	109954510	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtttataagatgcaagaGtacgaaatagctcatcctgt	8	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109954510	A	A	109954510	3	1	21	1	0	0	0	0	1	0	0	0	460	1029	36	4	4921	4	AKD1	6	109954510	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	470393	109954510	61160557	674	37722											
REV3L	5980	broad.mit.edu	37	chr6	111751002	111751002	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggcgcggggggtgagCacaggggcccggtcggacat	21	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111751002	G	G	111751002	1	3	21	0	1	0	0	0	0	0	0	0	13348	725	25	4		4	REV3L	6	111751002	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1796492	111751002	59364065	675	37723											
HS3ST5	222537	broad.mit.edu	37	chr6	114378433	114378433	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atattattttagggccagttCaatgtcctcccagtgatctg	8	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114378433	A	A	114378433	3	1	21	1	0	0	0	0	1	0	0	0	7435	825	29	3	15	3	HS3ST5	6	114378433	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2627431	114378433	56736634	676	37724											
EPB41L2	2037	broad.mit.edu	37	chr6	131186758	131186759	+	Missense_Mutation	DNP	CC	AA	AA													gtaacgtgcccgaatcaccaCcagccccgccatcaatcttt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	131186759	AA	AA	131186758	3	1	21	1	0	0	0	0	1	0	0	0	5195	507	18	3	282	3	EPB41L2	6	131186758	Missense_Mutation	DNP	CC	TCGA-05-4424-01A-22D-1855-08	16808325	131186758	39928309	677	37725											
SGK1	6446	broad.mit.edu	37	chr6	134618282	134618282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggacttgtgaggcccccaTaggctgagcacagaccacct	12	13	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134618282	C	C	134618282	1	2	21	0	1	0	0	0	0	0	0	0	14320	1421	49	5		5	SGK1	6	134618282	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	3431524	134618282	36496785	678	37726											
SGK1	6446	broad.mit.edu	37	chr6	134619639	134619639	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctctggttgactgtgaCggcagtgatgcctcccatgc	13	12	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134619639	T	T	134619639	1	4	21	0	1	0	0	0	0	0	0	0	14320	551	19	4		4	SGK1	6	134619639	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1357	134619639	36495428	679	37727											
PEX7	5191	broad.mit.edu	37	chr6	137146273	137146273	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggtattaaaatcaggtatCaattacttgataactccttg	7	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137146273	T	T	137146273	1	4	21	0	1	0	0	0	0	0	0	0	11846	841	29	4		4	PEX7	6	137146273	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2526634	137146273	33968794	680	37728											
KIAA1244	57221	broad.mit.edu	37	chr6	138584558	138584558	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagagcagacaccccgggaCtgcctaggccaccggtccct	12	16	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138584558	T	T	138584558	2	4	21	1	0	0	0	0	0	0	0	1	8287	564	20	4		4	KIAA1244	6	138584558	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1438285	138584558	32530509	681	37729											
LATS1	9113	broad.mit.edu	37	chr6	150004813	150004813	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcagagtgacttgctctaTttcctaatgggttattaaaa	8	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150004813	C	C	150004813	3	2	21	1	0	0	0	0	1	0	0	0	8718	1493	52	5	2000	5	LATS1	6	150004813	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	11420255	150004813	21110254	682	37730											
MTHFD1L	25902	broad.mit.edu	37	chr6	151420977	151420977	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgctcacaatgtttcctccAagaaccgcaaagccatcgtg	7	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151420977	G	G	151420977	1	3	21	0	1	0	0	0	0	0	0	0	10022	145	5	5		5	MTHFD1L	6	151420977	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1416164	151420977	19694090	683	37731											
SYNE1	23345	broad.mit.edu	37	chr6	152545687	152545687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccagtcagcagacggaatCgggaaagagagtatctggcc	14	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152545687	A	A	152545687	3	1	21	1	0	0	0	0	1	0	0	0	15564	884	31	3	5122	3	SYNE1	6	152545687	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1124710	152545687	18569380	684	37732											
SYNE1	23345	broad.mit.edu	37	chr6	152640026	152640026	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagttttagcttgaactacaTtatctgtcttcgctttcagc	6	10	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152640026	G	G	152640026	3	3	21	1	0	0	0	0	1	0	0	0	15564	1493	52	5	10353	5	SYNE1	6	152640026	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	94339	152640026	18475041	685	37733											
SYNE1	23345	broad.mit.edu	37	chr6	152804077	152804077	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaagaaacaatcaaattaGagaactctaagaaggtgtga	9	4	2	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152804077	T	T	152804077	1	4	21	0	1	0	0	0	0	0	0	0	15564	957	33	3		3	SYNE1	6	152804077	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	164051	152804077	18310990	686	37734											
MYCT1	80177	broad.mit.edu	37	chr6	153027165	153027165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctctccattaactacagCagaaattgtagtcacaaaaa	6	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153027165	A	A	153027165	1	1	21	0	1	0	0	0	0	0	0	0	10116	725	25	3		3	MYCT1	6	153027165	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	223088	153027165	18087902	687	37735											
NOX3	50508	broad.mit.edu	37	chr6	155743748	155743748	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagttaattaaaatcctcCccaagaatcggcagatgata	6	9	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155743748	T	T	155743748	1	4	21	0	1	0	0	0	0	0	0	0	10652	638	22	4		4	NOX3	6	155743748	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2716583	155743748	15371319	688	37736											
ARID1B	57492	broad.mit.edu	37	chr6	157528151	157528152	+	Frame_Shift_Ins	INS	-	T	T													cgtagcttgtcattcgtgccINStggcaatgatgccgaaatgt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157528152	T	T	157528151	7	5	21	1	0	1	1	0	0	0	0	0	916	681	24	0	5954	0	ARID1B	6	157528151	Frame_Shift_Ins	INS	-	TCGA-05-4424-01A-22D-1855-08	1784403	157528151	13586916	689	37737											
IGF2R	3482	broad.mit.edu	37	chr6	160482400	160482400	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taggcaaagcctctcagcctCccgtggatttccttatcctc	7	15	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160482400	T	T	160482400	1	4	21	0	1	0	0	0	0	0	0	0	7646	870	30	4		4	IGF2R	6	160482400	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2954249	160482400	10632667	690	37738											
LPA	4018	broad.mit.edu	37	chr6	161014927	161014927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagttagttggaagcatGgcccttccaagagaaatgta	11	6	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161014927	T	T	161014927	1	4	21	0	1	0	0	0	0	0	0	0	8990	1363	47	2		2	LPA	6	161014927	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	532527	161014927	10100140	691	37739											
PARK2	5071	broad.mit.edu	37	chr6	161780910	161780910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaatgctaactgtgtgcCtcacatagccatggaactac	7	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161780910	A	A	161780910	1	1	21	0	1	0	0	0	0	0	0	0	11543	696	24	2		2	PARK2	6	161780910	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	765983	161780910	9334157	692	37740											
PARK2	5071	broad.mit.edu	37	chr6	162475170	162475170	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcattcaccactcatccGgtttggaattaaaacatcat	6	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162475170	T	T	162475170	2	4	21	1	0	0	0	0	0	0	0	1	11543	1115	39	1		1	PARK2	6	162475170	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	694260	162475170	8639897	693	37741											
PDE10A	10846	broad.mit.edu	37	chr6	165746507	165746507	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggacagcgtgtcagggtgaCcagtgctcaatcttcagatg	14	9	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165746507	G	G	165746507	1	3	21	0	1	0	0	0	0	0	0	0	11724	522	18	4		4	PDE10A	6	165746507	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	3271337	165746507	5368560	694	37742											
PDE10A	10846	broad.mit.edu	37	chr6	165801929	165801929	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgacacagacacgcaatcAgcagtcctttgcgctttaaa	7	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165801929	T	T	165801929	3	4	21	1	0	0	0	0	1	0	0	0	11724	188	7	5	723	5	PDE10A	6	165801929	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	55422	165801929	5313138	695	37743											
THBS2	7058	broad.mit.edu	37	chr6	169622523	169622523	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccggtcagtgtttacgtaGaatgtgccactgaagtccac	10	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169622523	T	T	169622523	3	4	21	1	0	0	0	0	1	0	0	0	15977	933	33	3	492	3	THBS2	6	169622523	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3820594	169622523	1492544	696	37744											
C6orf70	55780	broad.mit.edu	37	chr6	170160823	170160823	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatgttaccatattgggaAgttgcactggtcaagttcaa	9	7	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170160823	G	G	170160823	2	3	21	1	0	0	0	0	0	0	0	1	2394	69	3	5		5	C6orf70	6	170160823	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	538300	170160823	954244	697	37745											
C7orf27	221927	broad.mit.edu	37	chr7	2583657	2583684	+	Intron	DEL	GCAGAGGGCCTCAGGGAAGATACAAATA	-	-													ccagaatagagctgggggagGcagagggcctcagggaagat					rs11267702		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2583684	-	-	2583657	6	5	21	0	1	1	0	1	0	0	0	0	2407	1218	42	0		0	C7orf27	7	2583657	Intron	DEL	GCAGAGGGCCTCAGGGAAGATACAAATA	TCGA-05-4424-01A-22D-1855-08		2583657	156555006	698	37746											
SDK1	221935	broad.mit.edu	37	chr7	4215484	4215484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtaagtgcgctctcagcGggaggcccatgccgcgaggc	15	14	1	0	rs140943909	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4215484	T	T	4215484	1	4	21	0	1	0	0	0	0	0	0	0	14081	1131	39	1		1	SDK1	7	4215484	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1631827	4215484	154923179	699	37747											
EIF2AK1	27102	broad.mit.edu	37	chr7	6066319	6066319	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaagagaggcaataaaaaCcaccttcactccaggaccaa	6	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6066319	G	G	6066319	1	3	21	0	1	0	0	0	0	0	0	0	5036	522	18	4		4	EIF2AK1	7	6066319	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1850835	6066319	153072344	700	37748											
ZDHHC4	55146	broad.mit.edu	37	chr7	6621324	6621324	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catacgaggtatttctctttCagagtttaaatattctcctc	5	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6621324	G	G	6621324	1	3	21	0	1	0	0	0	0	0	0	0	17743	841	29	4		4	ZDHHC4	7	6621324	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	555005	6621324	152517339	701	37749											
HDAC9	9734	broad.mit.edu	37	chr7	18869184	18869184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatctggtatgtattcctGgccagagctgcattttcagt	10	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18869184	T	T	18869184	1	4	21	0	1	0	0	0	0	0	0	0	7081	1363	47	2		2	HDAC9	7	18869184	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	12247860	18869184	140269479	702	37750											
FERD3L	222894	broad.mit.edu	37	chr7	19184867	19184867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcgcaagggctgggtccCccaaggagaccccgggtgcg	18	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19184867	A	A	19184867	3	1	21	1	0	0	0	0	1	0	0	0	5873	623	22	2	385	2	FERD3L	7	19184867	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	315683	19184867	139953796	703	37751											
ABCB5	340273	broad.mit.edu	37	chr7	20721275	20721275	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgaggtctatattattcaCttgtgatgtcacaggtaatg	9	6	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20721275	T	T	20721275	3	4	21	1	0	0	0	0	1	0	0	0	44	565	20	4	1950	4	ABCB5	7	20721275	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1536408	20721275	138417388	704	37752											
IGF2BP3	10643	broad.mit.edu	37	chr7	23509789	23509789	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgaaaaattaaaaccacccAcggtgatggatggatccagc	9	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509789	T	T	23509789	1	4	21	0	1	0	0	0	0	0	0	0	7645	174	6	5		5	IGF2BP3	7	23509789	5'UTR	SNP	A	TCGA-05-4424-01A-22D-1855-08	2788514	23509789	135628874	705	37753											
STK31	56164	broad.mit.edu	37	chr7	23823298	23823298	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatggtaaactttgtttccCttgcgaattactactcttca	5	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23823298	T	T	23823298	1	4	21	0	1	0	0	0	0	0	0	0	15414	696	24	4		4	STK31	7	23823298	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	313509	23823298	135315365	706	37754											
KIAA0895	23366	broad.mit.edu	37	chr7	36429683	36429683	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgcgggtgcagccagccaTgacccaccgctctaggcccc	11	17	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36429683	A	A	36429683	3	1	21	1	0	0	0	0	1	0	0	0	8267	1464	51	5	1618	5	KIAA0895	7	36429683	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	12606385	36429683	122708980	707	37755											
AOAH	313	broad.mit.edu	37	chr7	36616175	36616175	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcttaaatggaaagttaCgtaccatttcttgaaatatt	7	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36616175	T	T	36616175	1	4	21	0	1	0	0	0	0	0	0	0	728	551	19	4		4	AOAH	7	36616175	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	186492	36616175	122522488	708	37756											
ELMO1	9844	broad.mit.edu	37	chr7	36895151	36895151	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggcatgtctgggcccggCcacttcagttacagtcatag	13	11	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36895151	A	A	36895151	1	1	21	0	1	0	0	0	0	0	0	0	5107	754	26	3		3	ELMO1	7	36895151	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	278976	36895151	122243512	709	37757											
FIGNL1	63979	broad.mit.edu	37	chr7	50513772	50513772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggctttagcaaattctactCctgcaatatcttcccaattt	4	11	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50513772	A	A	50513772	3	1	21	1	0	0	0	0	1	0	0	0	5949	855	30	3	814	3	FIGNL1	7	50513772	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	13618621	50513772	108624891	710	37758											
POM121L12	285877	broad.mit.edu	37	chr7	53104302	53104302	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagacacaagcccacgtatCtactttcacttgctcatcct	6	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104302	T	T	53104302	1	4	21	0	1	0	0	0	0	0	0	0	12336	928	32	4		4	POM121L12	7	53104302	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	2590530	53104302	106034361	711	37759											
SEPT14	346288	broad.mit.edu	37	chr7	55874935	55874935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagcttaacgaagtcacaGtgattttcattttccactag	8	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55874935	T	T	55874935	3	4	21	1	0	0	0	0	1	0	0	0	14176	1020	36	3	476	3	SEPT14	7	55874935	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2770633	55874935	103263728	712	37760											
PHKG1	5260	broad.mit.edu	37	chr7	56151240	56151240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagggagcagcacacacGcccagcccagacatgtgcac	11	15	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56151240	T	T	56151240	1	4	21	0	1	0	0	0	0	0	0	0	11941	1102	38	3		3	PHKG1	7	56151240	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	276305	56151240	102987423	713	37761											
ZNF716	441234	broad.mit.edu	37	chr7	57522834	57522834	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcaaaataaagagccCcagaatataaagagaaatga	9	6	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57522834	A	A	57522834	2	1	21	1	0	0	0	0	0	0	0	1	18247	610	22	2		2	ZNF716	7	57522834	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1371594	57522834	101615829	714	37762											
STAG3L4	64940	broad.mit.edu	37	chr7	66784986	66784986	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaagctgccttttttggGggtcattagggaaggaatgg	16	5	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66784986	A	A	66784986	1	1	21	0	1	0	0	0	0	0	0	0	15365	1247	43	4		4	STAG3L4	7	66784986	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	9262152	66784986	92353677	715	37763											
SPDYE5	442590	broad.mit.edu	37	chr7	75130743	75130743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaacaaaacatcttccaCttcctgtatgggaagaaccg	6	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75130743	A	A	75130743	3	1	21	1	0	0	0	0	1	0	0	0	15150	564	20	3	711	3	SPDYE5	7	75130743	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	8345757	75130743	84007920	716	37764											
SRCRB4D	136853	broad.mit.edu	37	chr7	76019342	76019342	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagggaggtcacagctcCcagaagaagaggtggtctgc	16	8	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76019342	A	A	76019342	1	1	21	0	1	0	0	0	0	0	0	0	15255	638	22	2		2	SRCRB4D	7	76019342	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	888599	76019342	83119321	717	37765											
MAGI2	9863	broad.mit.edu	37	chr7	78131120	78131120	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattctataagagaacaagAgcacgtggttagtcactcca	10	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78131120	T	T	78131120	1	4	21	0	1	0	0	0	0	0	0	0	9283	319	11	5		5	MAGI2	7	78131120	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2111778	78131120	81007543	718	37766											
HGF	3082	broad.mit.edu	37	chr7	81388097	81388097	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaccagaggcattgttttCttgctttatcaaaaacaaaa	7	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81388097	G	G	81388097	3	3	21	1	0	0	0	0	1	0	0	0	7152	913	32	4	1992	4	HGF	7	81388097	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3256977	81388097	77750566	719	37767											
PCLO	27445	broad.mit.edu	37	chr7	82585417	82585417	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcatcttcatcaatgcTtgtgctactttttcgagtca	6	11	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82585417	C	C	82585417	3	2	21	1	0	0	0	0	1	0	0	0	11677	1609	56	5	10677	5	PCLO	7	82585417	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1197320	82585417	76553246	720	37768											
PCLO	27445	broad.mit.edu	37	chr7	82595231	82595231	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccttccatcttggtctgTggttgtttcccttcttgcac	7	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82595231	A	A	82595231	2	1	21	1	0	0	0	0	0	0	0	1	11677	1683	59	5		5	PCLO	7	82595231	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	9814	82595231	76543432	721	37769											
C7orf63	79846	broad.mit.edu	37	chr7	89884650	89884650	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacattttttaagttaccaaGggaaagtatcatataaatta	5	4	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89884650	C	C	89884650	1	2	21	0	1	0	0	0	0	0	0	0	2434	1015	35	4		4	C7orf63	7	89884650	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	7289419	89884650	69254013	722	37770											
FZD1	8321	broad.mit.edu	37	chr7	90896045	90896045	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgatcgtgggcatcacgtCgggcttctggatctggtccg	15	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90896045	T	T	90896045	3	4	21	1	0	0	0	0	1	0	0	0	6188	893	31	4	1852	4	FZD1	7	90896045	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1011395	90896045	68242618	723	37771											
COL1A2	1278	broad.mit.edu	37	chr7	94041443	94041443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcctgtcgtaagtattGctcattttccattatatttt	6	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94041443	T	T	94041443	1	4	21	0	1	0	0	0	0	0	0	0	3710	1334	46	3		3	COL1A2	7	94041443	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3145398	94041443	65097220	724	37772											
SLC25A13	10165	broad.mit.edu	37	chr7	95906671	95906671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttaaaaaaaagaaaaaCagtattttatatatttgatt	4	2	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95906671	A	A	95906671	1	1	21	0	1	0	0	0	0	0	0	0	14589	493	17	3		3	SLC25A13	7	95906671	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1865228	95906671	63231992	725	37773											
TRRAP	8295	broad.mit.edu	37	chr7	98508734	98508734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggacagacatacatccGtgtggccaactgccagactg	10	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98508734	T	T	98508734	3	4	21	1	0	0	0	0	1	0	0	0	16726	1145	40	3	1909	3	TRRAP	7	98508734	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2602063	98508734	60629929	726	37774											
TRRAP	8295	broad.mit.edu	37	chr7	98562188	98562188	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttgaataatgtgttgCtttcactctgtttttcgtgg	9	5	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98562188	T	T	98562188	1	4	21	0	1	0	0	0	0	0	0	0	16726	812	28	4		4	TRRAP	7	98562188	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	53454	98562188	60576475	727	37775											
ZNF498	221785	broad.mit.edu	37	chr7	99219026	99219026	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaggcagggagagcaggagGaaacagcactttgcagaggc	16	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99219026	A	A	99219026	3	1	21	1	0	0	0	0	1	0	0	0	18074	1175	41	4	424	4	ZNF498	7	99219026	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	656838	99219026	59919637	728	37776											
OR2AE1	81392	broad.mit.edu	37	chr7	99474611	99474611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggagtcatcgaagagccCctcaaggatgaagtctgcca	12	10	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99474611	A	A	99474611	3	1	21	1	0	0	0	0	1	0	0	0	11077	623	22	2	929	2	OR2AE1	7	99474611	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	255585	99474611	59664052	729	37777											
CUX1	1523	broad.mit.edu	37	chr7	101459241	101459241	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcgccgcccgcctgctGcctcctggcggctcctgaac	12	18	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101459241	T	T	101459241	1	4	21	0	1	0	0	0	0	0	0	0	4097	1334	46	3		3	CUX1	7	101459241	5'Flank	SNP	G	TCGA-05-4424-01A-22D-1855-08	1984630	101459241	57679422	730	37778											
LRWD1	222229	broad.mit.edu	37	chr7	102108635	102108635	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggctccgatggcagccagGtgagctgaggtggcaaggag	18	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102108635	C	C	102108635	5	2	21	1	0	0	0	0	0	0	1	0	9134	1275	44	4	827	4	LRWD1	7	102108635	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	649394	102108635	57030028	731	37779											
RELN	5649	broad.mit.edu	37	chr7	103136362	103136362	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttctgttaaggaaaattgGaagcaatatggcatattatt	8	5	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103136362	T	T	103136362	1	4	21	0	1	0	0	0	0	0	0	0	13328	1189	41	3		3	RELN	7	103136362	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1027727	103136362	56002301	732	37780											
SLC26A3	1811	broad.mit.edu	37	chr7	107418628	107418628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgagcactcacaattgggtCctgaacacgatggttagcag	11	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107418628	A	A	107418628	3	1	21	1	0	0	0	0	1	0	0	0	14632	854	30	3	824	3	SLC26A3	7	107418628	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4282266	107418628	51720035	733	37781											
SLC26A3	1811	broad.mit.edu	37	chr7	107427426	107427426	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgctttgaagaaaaataaAttgccaaaacccacttctgt	5	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107427426	T	T	107427426	1	4	21	0	1	0	0	0	0	0	0	0	14632	116	4	5		5	SLC26A3	7	107427426	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	8798	107427426	51711237	734	37782											
LAMB1	3912	broad.mit.edu	37	chr7	107592607	107592607	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgaccagtggctttgtcGcactggcagtcagagccgtt	12	12	1	2	rs34532909	byFrequency;by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107592607	T	T	107592607	4	4	21	1	0	0	0	0	0	1	0	0	8682	1079	38	3	2267	3	LAMB1	7	107592607	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	165181	107592607	51546056	735	37783											
IMMP2L	83943	broad.mit.edu	37	chr7	110303633	110303633	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaactggcctcccaatgcCagcaactcaggtagattcat	8	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110303633	A	A	110303633	1	1	21	0	1	0	0	0	0	0	0	0	7787	609	21	2		2	IMMP2L	7	110303633	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	2711026	110303633	48835030	736	37784											
PPP1R3A	5506	broad.mit.edu	37	chr7	113517986	113517986	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgactttcctcaacaggaAgactagtagaagcagagctg	10	9	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113517986	G	G	113517986	3	3	21	1	0	0	0	0	1	0	0	0	12472	72	3	5	211	5	PPP1R3A	7	113517986	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	3214353	113517986	45620677	737	37785											
MDFIC	29969	broad.mit.edu	37	chr7	114655879	114655879	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggtgacgagatgggggatGattgtaactgcccttgtgat	16	5	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114655879	A	A	114655879	3	1	21	1	0	0	0	0	1	0	0	0	9498	1290	45	4	1018	4	MDFIC	7	114655879	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1137893	114655879	44482784	738	37786											
CFTR	1080	broad.mit.edu	37	chr7	117243607	117243607	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actcctcttcaagacaaaggGaatagtactcatagtagaaa	7	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117243607	T	T	117243607	2	4	21	1	0	0	0	0	0	0	0	1	3324	1161	41	3		3	CFTR	7	117243607	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2587728	117243607	41895056	739	37787											
CTTNBP2	83992	broad.mit.edu	37	chr7	117431174	117431174	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagcgtataacatttcaatCcctttacctgatgctgttac	5	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117431174	A	A	117431174	1	1	21	0	1	0	0	0	0	0	0	0	4079	870	30	3		3	CTTNBP2	7	117431174	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	187567	117431174	41707489	740	37788											
ANKRD7	56311	broad.mit.edu	37	chr7	117874821	117874821	+	Missense_Mutation	SNP	A	T	T													ttggtgcagacccagatctgAgggatattcgttataatact							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117874821	T	T	117874821	3	4	21	1	0	0	0	0	1	0	0	0	686	295	11	5	371	5	ANKRD7	7	117874821	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	443647	117874821	41263842	741	37789	208	2									
ANKRD7	56311	broad.mit.edu	37	chr7	117874823	117874823	+	Missense_Mutation	SNP	G	T	T													ggtgcagacccagatctgagGgatattcgttataatactgt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117874823	T	T	117874823	3	4	21	1	0	0	0	0	1	0	0	0	686	1223	43	2	373	2	ANKRD7	7	117874823	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2	117874823	41263840	742	37790	208	2									
KCND2	3751	broad.mit.edu	37	chr7	119915484	119915484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtcatgagtatcatcgaCgtggtggccatcctgcctta	11	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119915484	A	A	119915484	3	1	21	1	0	0	0	0	1	0	0	0	8089	535	19	3	800	3	KCND2	7	119915484	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2040661	119915484	39223179	743	37791											
PTPRZ1	5803	broad.mit.edu	37	chr7	121701105	121701105	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttcactgagcttcgcaTttattacctcccatcttctg	5	13	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121701105	A	A	121701105	1	1	21	0	1	0	0	0	0	0	0	0	12922	1508	52	5		5	PTPRZ1	7	121701105	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	1785621	121701105	37437558	744	37792											
SLC13A1	6561	broad.mit.edu	37	chr7	122811981	122811981	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaataacaattaaacccgtGattatttactttggtgggga	9	5	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122811981	T	T	122811981	1	4	21	0	1	0	0	0	0	0	0	0	14504	1305	45	3		3	SLC13A1	7	122811981	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1110876	122811981	36326682	745	37793											
LMOD2	442721	broad.mit.edu	37	chr7	123302675	123302675	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaccaagaatgagcatgacGagcattttgacaagaaatat	10	6	0	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123302675	A	A	123302675	2	1	21	1	0	0	0	0	0	0	0	1	8931	1045	37	4		4	LMOD2	7	123302675	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	490694	123302675	35835988	746	37794											
GCC1	79571	broad.mit.edu	37	chr7	127223074	127223074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgcaacctgcagcagcCtcttcagcttctccatctta	7	16	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127223074	A	A	127223074	3	1	21	1	0	0	0	0	1	0	0	0	6347	681	24	2	1009	2	GCC1	7	127223074	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3920399	127223074	31915589	747	37795											
FLNC	2318	broad.mit.edu	37	chr7	128496648	128496648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggggcgtgattgatgcccGggtgcacacaccctcggggg	17	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128496648	T	T	128496648	3	4	21	1	0	0	0	0	1	0	0	0	5993	1116	39	1	7502	1	FLNC	7	128496648	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1273574	128496648	30642015	748	37796											
CPA2	1358	broad.mit.edu	37	chr7	129913068	129913068	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgtttctagaatctccctCctcccaggctagccggcagt	9	14	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129913068	T	T	129913068	1	4	21	0	1	0	0	0	0	0	0	0	3822	870	30	4		4	CPA2	7	129913068	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1416420	129913068	29225595	749	37797											
CPA5	93979	broad.mit.edu	37	chr7	130002886	130002886	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtcagctctagggggatgGagaaaaggtcactgtgcttt	16	6	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130002886	T	T	130002886	1	4	21	0	1	0	0	0	0	0	0	0	3825	1189	41	3		3	CPA5	7	130002886	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	89818	130002886	29135777	750	37798											
LRGUK	136332	broad.mit.edu	37	chr7	133821833	133821833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagcactccatcacttgGggcgctcaggctctgggact	11	14	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133821833	T	T	133821833	3	4	21	1	0	0	0	0	1	0	0	0	9030	1232	43	2	361	2	LRGUK	7	133821833	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3818947	133821833	25316830	751	37799											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138413517	138413517	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcccttacctgggatttccGatgactggctctaagaataa	9	10	1	2	rs150175783	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138413517	A	A	138413517	3	1	21	1	0	0	0	0	1	0	0	0	1174	1057	37	4	543	4	ATP6V0A4	7	138413517	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4591684	138413517	20725146	752	37800											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138417828	138417828	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaatgatgttgagagttcTtctgaagtatctgggggtgg	15	4	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138417828	C	C	138417828	3	2	21	1	0	0	0	0	1	0	0	0	1174	1617	56	5	844	5	ATP6V0A4	7	138417828	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	4311	138417828	20720835	753	37801											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138768512	138768512	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagttcacacaattgaaaaaGaaaaggcctttacctctggg	9	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138768512	A	A	138768512	1	1	21	0	1	0	0	0	0	0	0	0	17701	957	33	4		4	ZC3HAV1	7	138768512	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	350684	138768512	20370151	754	37802											
NDUFB2	4708	broad.mit.edu	37	chr7	140402552	140402552	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgaacttctgtctatatttCagtggagatgagaaacatta	9	5	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140402552	G	G	140402552	1	3	21	0	1	0	0	0	0	0	0	0	10376	841	29	4		4	NDUFB2	7	140402552	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1634040	140402552	18736111	755	37803											
AGK	55750	broad.mit.edu	37	chr7	141301115	141301115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgtttatttcacccaaGcagctgcctcttataacaac	5	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141301115	T	T	141301115	1	4	21	0	1	0	0	0	0	0	0	0	383	986	34	3		3	AGK	7	141301115	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	898563	141301115	17837548	756	37804											
AGK	55750	broad.mit.edu	37	chr7	141352626	141352626	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcattgacagtgaggagtatGaagcgatgcctgtggaggtg	17	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141352626	A	A	141352626	3	1	21	1	0	0	0	0	1	0	0	0	383	1291	45	4	1229	4	AGK	7	141352626	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	51511	141352626	17786037	757	37805											
EPHB6	2051	broad.mit.edu	37	chr7	142564152	142564152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcctgatctccagcctgGtccacccctgccgccctccc	6	22	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142564152	T	T	142564152	1	4	21	0	1	0	0	0	0	0	0	0	5220	1276	44	3		3	EPHB6	7	142564152	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1211526	142564152	16574511	758	37806											
TRPV6	55503	broad.mit.edu	37	chr7	142572149	142572149	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggccatgtgtggcttgcAgaacctgcaatgtctactgt	12	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142572149	G	G	142572149	1	3	21	0	1	0	0	0	0	0	0	0	16725	203	7	5		5	TRPV6	7	142572149	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	7997	142572149	16566514	759	37807											
TRPV5	56302	broad.mit.edu	37	chr7	142625146	142625146	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacaaacactaaattccCtcacatgacaggcctgatcc	5	15	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142625146	T	T	142625146	1	4	21	0	1	0	0	0	0	0	0	0	16724	696	24	4		4	TRPV5	7	142625146	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	52997	142625146	16513517	760	37808											
TRPV5	56302	broad.mit.edu	37	chr7	142626068	142626068	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctccactccttaccctgtCcctcgctccccacagcatcc	4	22	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142626068	A	A	142626068	1	1	21	0	1	0	0	0	0	0	0	0	16724	870	30	3		3	TRPV5	7	142626068	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	922	142626068	16512595	761	37809											
C7orf34	135927	broad.mit.edu	37	chr7	142637343	142637343	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgggcaattgggactgcAgccctaggcttcaacgtgtt	12	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142637343	C	C	142637343	1	2	21	0	1	0	0	0	0	0	0	0	2414	203	7	5		5	C7orf34	7	142637343	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	11275	142637343	16501320	762	37810											
KEL	3792	broad.mit.edu	37	chr7	142638514	142638514	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatcacctgagcaggaagaGaggtcattgaagggggaggg	17	6	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142638514	C	C	142638514	1	2	21	0	1	0	0	0	0	0	0	0	8212	957	33	4		4	KEL	7	142638514	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1171	142638514	16500149	763	37811											
CLCN1	1180	broad.mit.edu	37	chr7	143018994	143018994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggccctcaggagccaggGtggcaccaactctagaggga	16	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143018994	T	T	143018994	1	4	21	0	1	0	0	0	0	0	0	0	3493	1276	44	3		3	CLCN1	7	143018994	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	380480	143018994	16119669	764	37812											
TPK1	27010	broad.mit.edu	37	chr7	144345052	144345052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaccaaggcatgttagCacttggctccagcatgttgt	10	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144345052	A	A	144345052	1	1	21	0	1	0	0	0	0	0	0	0	16528	725	25	3		3	TPK1	7	144345052	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1326058	144345052	14793611	765	37813											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741176	146741176	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattgtttaaatttgtggcAggttttatctttatttaaat	7	2	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146741176	T	T	146741176	1	4	21	0	1	0	0	0	0	0	0	0	3679	203	7	5		5	CNTNAP2	7	146741176	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2396124	146741176	12397487	766	37814											
C7orf33	202865	broad.mit.edu	37	chr7	148311163	148311163	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaccaaaacatgaaccgGgggatggaatttattgctcc	9	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148311163	T	T	148311163	2	4	21	1	0	0	0	0	0	0	0	1	2413	1219	43	2		2	C7orf33	7	148311163	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1569987	148311163	10827500	767	37815											
PDIA4	9601	broad.mit.edu	37	chr7	148701310	148701310	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcttcagttttcctgccaagGaaagcaaggcgggagggggc	16	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148701310	A	A	148701310	1	1	21	0	1	0	0	0	0	0	0	0	11764	1189	41	4		4	PDIA4	7	148701310	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	390147	148701310	10437353	768	37816											
ZNF746	155061	broad.mit.edu	37	chr7	149174083	149174083	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagagggatggtggggaggGagatccgtttgccaggaggt	21	4	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149174083	A	A	149174083	2	1	21	1	0	0	0	0	0	0	0	1	18258	1161	41	4		4	ZNF746	7	149174083	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	472773	149174083	9964580	769	37817											
SSPO	23145	broad.mit.edu	37	chr7	149495280	149495280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcttccagagccaggggCcgttacatctcaggggttca	12	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149495280	A	A	149495280	1	1	21	0	1	0	0	0	0	0	0	0	15307	754	26	3		3	SSPO	7	149495280	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	321197	149495280	9643383	770	37818											
TMEM176A	55365	broad.mit.edu	37	chr7	150501975	150501975	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccatgcctctcctgattaTtagtgcctggtgcttctgca	9	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150501975	C	C	150501975	1	2	21	0	1	0	0	0	0	0	0	0	16215	1508	52	5		5	TMEM176A	7	150501975	3'UTR	SNP	T	TCGA-05-4424-01A-22D-1855-08	1006695	150501975	8636688	771	37819											
NOS3	4846	broad.mit.edu	37	chr7	150704098	150704098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggcaccctcaggtcaGggcctcaccaagaggggtgc	14	15	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150704098	T	T	150704098	1	4	21	0	1	0	0	0	0	0	0	0	10639	1015	35	2		2	NOS3	7	150704098	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	202123	150704098	8434565	772	37820											
ABCB8	11194	broad.mit.edu	37	chr7	150741345	150741345	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgtggatcagtgggttgagGatggcttcatcacggacagt	16	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150741345	T	T	150741345	1	4	21	0	1	0	0	0	0	0	0	0	47	1189	41	3		3	ABCB8	7	150741345	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	37247	150741345	8397318	773	37821											
MLL3	58508	broad.mit.edu	37	chr7	151878797	151878797	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggatcctgagaggatggagGaggttgcattggagtcttaa	16	4	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151878797	A	A	151878797	3	1	21	1	0	0	0	0	1	0	0	0	9715	1174	41	4	8683	4	MLL3	7	151878797	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1137452	151878797	7259866	774	37822											
DPP6	1804	broad.mit.edu	37	chr7	154143449	154143449	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggaaaagcaagtcgctgtCagagagaaagagcataattt	11	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154143449	A	A	154143449	1	1	21	0	1	0	0	0	0	0	0	0	4770	841	29	3		3	DPP6	7	154143449	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2264652	154143449	4995214	775	37823											
CSMD1	64478	broad.mit.edu	37	chr8	2876253	2876253	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaacaaacaaaaacaaAcaaaaaaaaccaaaaaacta	0	8	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2876253	T	T	2876253	1	4	21	0	1	0	0	0	0	0	0	0	3978	58	2	5		5	CSMD1	8	2876253	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08		2876253	143487769	776	37824											
CSMD1	64478	broad.mit.edu	37	chr8	3087561	3087561	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagttctgttgtctgataCctatgcatgtaggagggtct	11	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3087561	A	A	3087561	5	1	21	1	0	0	0	0	0	0	1	0	3978	521	18	3	6524	3	CSMD1	8	3087561	Splice_Site	SNP	C	TCGA-05-4424-01A-22D-1855-08	211308	3087561	143276461	777	37825											
RP1L1	94137	broad.mit.edu	37	chr8	10468347	10468347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttggagcccatcagcgcCctcatgatctgcgtggaggc	13	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10468347	A	A	10468347	3	1	21	1	0	0	0	0	1	0	0	0	13644	622	22	2	3945	2	RP1L1	8	10468347	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	7380786	10468347	135895675	778	37826											
RP1L1	94137	broad.mit.edu	37	chr8	10470559	10470559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttccccactggctgccGtgagggcgctggccctgccc	14	17	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10470559	T	T	10470559	3	4	21	1	0	0	0	0	1	0	0	0	13644	1145	40	3	6157	3	RP1L1	8	10470559	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2212	10470559	135893463	779	37827											
RP1L1	94137	broad.mit.edu	37	chr8	10480731	10480731	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtgggggctctggccgCtgtaacagggcagaggaaga	19	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10480731	A	A	10480731	5	1	21	1	0	0	0	0	0	0	1	0	13644	811	28	3		3	RP1L1	8	10480731	Splice_Site	SNP	C	TCGA-05-4424-01A-22D-1855-08	10172	10480731	135883291	780	37828											
XKR6	286046	broad.mit.edu	37	chr8	10755642	10755642	+	Frame_Shift_Del	DEL	C	-	-													atgtcaatcttaatgaggggCccttctgggaggtaaggacg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10755642	-	-	10755642	7	5	21	1	0	1	0	1	0	0	0	0	17562	726	26	0	183	0	XKR6	8	10755642	Frame_Shift_Del	DEL	C	TCGA-05-4424-01A-22D-1855-08	274911	10755642	135608380	781	37829											
MTMR9	66036	broad.mit.edu	37	chr8	11163743	11163743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcactggtacaaacgggagGaggtgcaaggaggacgagaa	16	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11163743	T	T	11163743	3	4	21	1	0	0	0	0	1	0	0	0	10044	1165	41	3	654	3	MTMR9	8	11163743	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	408101	11163743	135200279	782	37830											
SGCZ	137868	broad.mit.edu	37	chr8	14166485	14166485	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcagagtttcagtgtcttGaggatgaattccaaaccgca	9	9	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14166485	T	T	14166485	1	4	21	0	1	0	0	0	0	0	0	0	14317	1305	45	3		3	SGCZ	8	14166485	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3002742	14166485	132197537	783	37831											
SLC18A1	6570	broad.mit.edu	37	chr8	20004891	20004891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctttacaatggcaccacCggtggatggacctgggaggg	16	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20004891	A	A	20004891	3	1	21	1	0	0	0	0	1	0	0	0	14538	652	23	1	243	1	SLC18A1	8	20004891	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5838406	20004891	126359131	784	37832											
SFTPC	6440	broad.mit.edu	37	chr8	22019268	22019268	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtccttcacctctgtcccctCtccctacggacacatataag	5	17	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22019268	G	G	22019268	1	3	21	0	1	0	0	0	0	0	0	0	14305	928	32	4		4	SFTPC	8	22019268	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	2014377	22019268	124344754	785	37833											
PHYHIP	9796	broad.mit.edu	37	chr8	22079339	22079339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagcataccgctggtggGggagccgtggctgccactgt	18	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22079339	T	T	22079339	3	4	21	1	0	0	0	0	1	0	0	0	11961	1232	43	2	476	2	PHYHIP	8	22079339	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	60071	22079339	124284683	786	37834											
ADAM7	8756	broad.mit.edu	37	chr8	24339838	24339838	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactcaggttggtgattgctCtattttcttgcatacctttg	8	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24339838	A	A	24339838	1	1	21	0	1	0	0	0	0	0	0	0	251	928	32	3		3	ADAM7	8	24339838	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2260499	24339838	122024184	787	37835											
GSR	2936	broad.mit.edu	37	chr8	30565731	30565731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaactaaggcatctgtccCtgaacaccccgagcagagaa	9	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30565731	A	A	30565731	1	1	21	0	1	0	0	0	0	0	0	0	6894	696	24	2		2	GSR	8	30565731	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6225893	30565731	115798291	788	37836											
TEX15	56154	broad.mit.edu	37	chr8	30695587	30695587	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcctgtagtcctattaggtGcaacacatacataaaaatga	6	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30695587	C	C	30695587	1	2	21	0	1	0	0	0	0	0	0	0	15901	1334	46	4		4	TEX15	8	30695587	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	129856	30695587	115668435	789	37837											
KCNU1	157855	broad.mit.edu	37	chr8	36703265	36703265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactgagtcagcaccatgCctcctttgcattaagactca	6	15	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36703265	A	A	36703265	1	1	21	0	1	0	0	0	0	0	0	0	8163	754	26	3		3	KCNU1	8	36703265	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6007678	36703265	109660757	790	37838											
KCNU1	157855	broad.mit.edu	37	chr8	36746674	36746674	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaagtgcttggattacaGgtatgagccatatgcccagc	10	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36746674	T	T	36746674	1	4	21	0	1	0	0	0	0	0	0	0	8163	1015	35	2		2	KCNU1	8	36746674	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	43409	36746674	109617348	791	37839											
KCNU1	157855	broad.mit.edu	37	chr8	36766760	36766761	+	Intron	DNP	GG	AT	AT													gaagaattgggaggagaagaGggggcctacttggagggatt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	36766761	AT	AT	36766760	1	1	21	0	1	0	0	0	0	0	0	0	8163	1015	35	4		4	KCNU1	8	36766760	Intron	DNP	GG	TCGA-05-4424-01A-22D-1855-08	20086	36766760	109597262	792	37840											
C8orf86	389649	broad.mit.edu	37	chr8	38374040	38374040	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcataagcctagagacaGggaacagattagatgatctc	9	8	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38374040	A	A	38374040	1	1	21	0	1	0	0	0	0	0	0	0	2468	1015	35	4		4	C8orf86	8	38374040	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1607280	38374040	107989982	793	37841											
TACC1	6867	broad.mit.edu	37	chr8	38646312	38646312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatccatcactcggattGgcaggacctggggccaaaag	13	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38646312	T	T	38646312	3	4	21	1	0	0	0	0	1	0	0	0	15620	1339	47	2	258	2	TACC1	8	38646312	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	272272	38646312	107717710	794	37842											
CHRNA6	8973	broad.mit.edu	37	chr8	42611846	42611846	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagttttgatgatcaaaagGgaaaaaggtgatatccatag	10	4	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42611846	A	A	42611846	3	1	21	1	0	0	0	0	1	0	0	0	3418	1232	43	4	996	4	CHRNA6	8	42611846	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3965534	42611846	103752176	795	37843											
MCM4	4173	broad.mit.edu	37	chr8	48883377	48883377	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagttcgacaagatgaatGaaagtacaagatcggtattg	11	4	0	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48883377	A	A	48883377	3	1	21	1	0	0	0	0	1	0	0	0	9482	1291	45	4	1783	4	MCM4	8	48883377	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6271531	48883377	97480645	796	37844											
SNTG1	54212	broad.mit.edu	37	chr8	51569419	51569419	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatatttttagatataagaTatctaaaataagaagttttg	5	1	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51569419	A	A	51569419	1	1	21	0	1	0	0	0	0	0	0	0	14988	1421	49	5		5	SNTG1	8	51569419	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2686042	51569419	94794603	797	37845											
SNTG1	54212	broad.mit.edu	37	chr8	51617038	51617038	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataatgtctaatgaagacttGgtgaattcgcagagtgttgt	11	4	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51617038	A	A	51617038	1	1	21	0	1	0	0	0	0	0	0	0	14988	1363	47	4		4	SNTG1	8	51617038	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	47619	51617038	94746984	798	37846											
PCMTD1	115294	broad.mit.edu	37	chr8	52732947	52732947	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgtcaagtaagcttttaaAgattcagggaggggcagctt	12	5	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52732947	G	G	52732947	2	3	21	1	0	0	0	0	0	0	0	1	11680	59	3	5		5	PCMTD1	8	52732947	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	1115909	52732947	93631075	799	37847											
ATP6V1H	51606	broad.mit.edu	37	chr8	54708072	54708072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaattagtgatattttaCtctatattcaccaagactct	3	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54708072	A	A	54708072	1	1	21	0	1	0	0	0	0	0	0	0	1193	580	20	3		3	ATP6V1H	8	54708072	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1975125	54708072	91655950	800	37848											
RGS20	8601	broad.mit.edu	37	chr8	54764607	54764607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgaaggagacctcaggGctgttcctgatatcaaggta	11	7	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54764607	T	T	54764607	3	4	21	1	0	0	0	0	1	0	0	0	13412	1203	42	3	150	3	RGS20	8	54764607	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	56535	54764607	91599415	801	37849											
RP1	6101	broad.mit.edu	37	chr8	55541512	55541512	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacaggtatctagtagttcAtctatgttgcaggaattcca	9	7	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55541512	T	T	55541512	2	4	21	1	0	0	0	0	0	0	0	1	13643	204	8	5		5	RP1	8	55541512	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	776905	55541512	90822510	802	37850											
ASPH	444	broad.mit.edu	37	chr8	62538884	62538884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaaggaccaaccagacaCagactgtgaaactgcttcat	7	10	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62538884	A	A	62538884	1	1	21	0	1	0	0	0	0	0	0	0	1057	493	17	3		3	ASPH	8	62538884	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6997372	62538884	83825138	803	37851											
CSPP1	79848	broad.mit.edu	37	chr8	67976536	67976536	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggcgatgtcttgccgcgCggccgcctgcagtgggggcg	21	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67976536	T	T	67976536	1	4	21	0	1	0	0	0	0	0	0	0	3996	783	27	4		4	CSPP1	8	67976536	5'Flank	SNP	C	TCGA-05-4424-01A-22D-1855-08	5437652	67976536	78387486	804	37852											
PREX2	80243	broad.mit.edu	37	chr8	69104502	69104502	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagactattctttaacagctAtaccaacctatctaaaagaa	3	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69104502	G	G	69104502	1	3	21	0	1	0	0	0	0	0	0	0	12583	464	16	5		5	PREX2	8	69104502	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1127966	69104502	77259520	805	37853											
EYA1	2138	broad.mit.edu	37	chr8	72234362	72234362	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagatggaacatgtgggcaCagacatgactttaaataaat	9	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72234362	T	T	72234362	1	4	21	0	1	0	0	0	0	0	0	0	5371	493	17	4		4	EYA1	8	72234362	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3129860	72234362	74129660	806	37854											
CRISPLD1	83690	broad.mit.edu	37	chr8	75941685	75941685	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaatcacggtggttatgttGatgtaatgcctgtggacaaa	12	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75941685	A	A	75941685	3	1	21	1	0	0	0	0	1	0	0	0	3914	1290	45	4	1434	4	CRISPLD1	8	75941685	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3707323	75941685	70422337	807	37855											
ZFHX4	79776	broad.mit.edu	37	chr8	77616325	77616325	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccccatgtagcaattgccaTggaaacctgtgactcccctc	7	15	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77616325	A	A	77616325	3	1	21	1	0	0	0	0	1	0	0	0	17761	1464	51	5	4	5	ZFHX4	8	77616325	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1674640	77616325	68747697	808	37856											
ZFHX4	79776	broad.mit.edu	37	chr8	77764826	77764826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agacacaaagaagcaaaaatCcttggaaccatccatcccac	5	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764826	A	A	77764826	3	1	21	1	0	0	0	0	1	0	0	0	17761	855	30	3	5703	3	ZFHX4	8	77764826	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	148501	77764826	68599196	809	37857											
ZFHX4	79776	broad.mit.edu	37	chr8	77775789	77775789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttacacctcagctccctgGaacagtgcaggggggatact	11	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77775789	T	T	77775789	3	4	21	1	0	0	0	0	1	0	0	0	17761	1174	41	3	9877	3	ZFHX4	8	77775789	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	10963	77775789	68588233	810	37858											
LRRCC1	85444	broad.mit.edu	37	chr8	86047325	86047326	+	Intron	INS	-	T	T													acattattttctcaagtgggINSttgtgataaatttaggaagt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86047326	T	T	86047325	6	5	21	0	1	1	1	0	0	0	0	0	9113	1276	44	0		0	LRRCC1	8	86047325	Intron	INS	-	TCGA-05-4424-01A-22D-1855-08	8271536	86047325	60316697	811	37859											
CNGB3	54714	broad.mit.edu	37	chr8	87641203	87641203	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtccgaactcgcttttgcAcaagtttaggaatggagtaa	10	7	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87641203	T	T	87641203	3	4	21	1	0	0	0	0	1	0	0	0	3633	159	6	5	1033	5	CNGB3	8	87641203	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1593878	87641203	58722819	812	37860											
CNGB3	54714	broad.mit.edu	37	chr8	87656858	87656858	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttatactttacctgtagatAtatgctttgtccattataga	6	6	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87656858	G	G	87656858	2	3	21	1	0	0	0	0	0	0	0	1	3633	456	16	5		5	CNGB3	8	87656858	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	15655	87656858	58707164	813	37861											
NECAB1	64168	broad.mit.edu	37	chr8	91967707	91967707	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttagaaaacatttttctCttttcagcttcgtggtggat	7	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91967707	G	G	91967707	1	3	21	0	1	0	0	0	0	0	0	0	10399	928	32	4		4	NECAB1	8	91967707	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4310849	91967707	54396315	814	37862											
SLC26A7	115111	broad.mit.edu	37	chr8	92301241	92301241	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaataatgctagactcttgTtgagcaagtagaataaagta	9	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92301241	C	C	92301241	1	2	21	0	1	0	0	0	0	0	0	0	14636	1740	60	5		5	SLC26A7	8	92301241	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	333534	92301241	54062781	815	37863											
SLC26A7	115111	broad.mit.edu	37	chr8	92352651	92352651	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaattccctcacctagagctCccccgatgaacatcctctct	5	17	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92352651	G	G	92352651	3	3	21	1	0	0	0	0	1	0	0	0	14636	855	30	4	924	4	SLC26A7	8	92352651	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	51410	92352651	54011371	816	37864											
SLC26A7	115111	broad.mit.edu	37	chr8	92375833	92375833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgagataattttaagaCatcacaaaaattagataaat	7	3	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92375833	A	A	92375833	1	1	21	0	1	0	0	0	0	0	0	0	14636	493	17	3		3	SLC26A7	8	92375833	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	23182	92375833	53988189	817	37865											
RUNX1T1	862	broad.mit.edu	37	chr8	92998350	92998350	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactcatctgaagaaaagttAcctagtgcaactgggtctgg	10	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92998350	T	T	92998350	5	4	21	1	0	0	0	0	0	0	1	0	13858	405	14	5	549	5	RUNX1T1	8	92998350	Splice_Site	SNP	A	TCGA-05-4424-01A-22D-1855-08	622517	92998350	53365672	818	37866											
RUNX1T1	862	broad.mit.edu	37	chr8	92999102	92999102	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaatcccaaatgattActgatgtcttacatggtcaa	5	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92999102	T	T	92999102	1	4	21	0	1	0	0	0	0	0	0	0	13858	406	14	5		5	RUNX1T1	8	92999102	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	752	92999102	53364920	819	37867											
RUNX1T1	862	broad.mit.edu	37	chr8	93023247	93023247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttcaaaaatgggatgaCaaaaggtctcagtgggaagt	11	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93023247	A	A	93023247	3	1	21	1	0	0	0	0	1	0	0	0	13858	478	17	3	1305	3	RUNX1T1	8	93023247	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	24145	93023247	53340775	820	37868											
CCNE2	9134	broad.mit.edu	37	chr8	95894999	95894999	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagaagacaacaaatagAgagtcttacctgaggctttc	10	7	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95894999	C	C	95894999	1	2	21	0	1	0	0	0	0	0	0	0	2951	319	11	5		5	CCNE2	8	95894999	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2871752	95894999	50469023	821	37869											
HRSP12	10247	broad.mit.edu	37	chr8	99118453	99118453	+	Intron	DEL	C	-	-													ccatatatttttcaaaaagaCcaaagaaatatcaaaaagaa							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99118453	-	-	99118453	6	5	21	0	1	1	0	1	0	0	0	0	7427	522	18	0		0	HRSP12	8	99118453	Intron	DEL	C	TCGA-05-4424-01A-22D-1855-08	3223454	99118453	47245569	822	37870											
SPAG1	6674	broad.mit.edu	37	chr8	101174537	101174537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagattatccatcattgtGgggctttggaacaacaaaaa	8	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101174537	T	T	101174537	3	4	21	1	0	0	0	0	1	0	0	0	15091	1357	47	2	31	2	SPAG1	8	101174537	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2056084	101174537	45189485	823	37871											
RIMS2	9699	broad.mit.edu	37	chr8	104664378	104664378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatgaacacaaatttgtaAatagaaatctcttcatagta	4	5	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104664378	G	G	104664378	1	3	21	0	1	0	0	0	0	0	0	0	13479	29	1	5		5	RIMS2	8	104664378	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	3489841	104664378	41699644	824	37872											
RIMS2	9699	broad.mit.edu	37	chr8	105026023	105026023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggatataatagtgtgtGgctaccattgtaatttgttt	9	5	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105026023	T	T	105026023	1	4	21	0	1	0	0	0	0	0	0	0	13479	1363	47	2		2	RIMS2	8	105026023	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	361645	105026023	41337999	825	37873											
DPYS	1807	broad.mit.edu	37	chr8	105440154	105440154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctggtcctcaaatgggCaggatcctggctgaagaact	11	11	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105440154	A	A	105440154	1	1	21	0	1	0	0	0	0	0	0	0	4786	725	25	3		3	DPYS	8	105440154	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	414131	105440154	40923868	826	37874											
ZFPM2	23414	broad.mit.edu	37	chr8	106431453	106431453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctccaaaggagactttcCattggaggaaagcttttcca	8	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106431453	A	A	106431453	3	1	21	1	0	0	0	0	1	0	0	0	17784	594	21	2	128	2	ZFPM2	8	106431453	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	991299	106431453	39932569	827	37875											
CSMD3	114788	broad.mit.edu	37	chr8	113293346	113293346	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacacacaaaaatacttatAtactcatcaatactttcata	0	9	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113293346	G	G	113293346	1	3	21	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113293346	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	6861893	113293346	33070676	828	37876											
CSMD3	114788	broad.mit.edu	37	chr8	113585679	113585679	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaatgtaattatttaatAtacatgcagcaccccagtgt	7	8	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113585679	G	G	113585679	1	3	21	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113585679	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	292333	113585679	32778343	829	37877											
CSMD3	114788	broad.mit.edu	37	chr8	113585804	113585804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagccagagttgatttgaaGtactactaagtgtcagtccg	10	8	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113585804	T	T	113585804	3	4	21	1	0	0	0	0	1	0	0	0	3980	1029	36	3	7347	3	CSMD3	8	113585804	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	125	113585804	32778218	830	37878											
CSMD3	114788	broad.mit.edu	37	chr8	113668420	113668420	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaccattattggaacgactGttgtctgttgtaaatagaag	9	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113668420	C	C	113668420	3	2	21	1	0	0	0	0	1	0	0	0	3980	1368	48	4	8372	4	CSMD3	8	113668420	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	82616	113668420	32695602	831	37879											
MED30	90390	broad.mit.edu	37	chr8	118535548	118535548	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccaaatccgcctctaaacTggaattcggttgttgaccca	8	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118535548	A	A	118535548	1	1	21	0	1	0	0	0	0	0	0	0	9541	1595	55	5		5	MED30	8	118535548	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	4867128	118535548	27828474	832	37880											
ATAD2	29028	broad.mit.edu	37	chr8	124413410	124413410	+	RNA	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatgttgaaagaggcaaatGagatcctgcagcaaagcaag	12	6	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124413410	C	C	124413410	1	2	21	0	1	0	0	0	0	0	0	0	1075	1305	45	4		4	ATAD2	8	124413410	RNA	SNP	G	TCGA-05-4424-01A-22D-1855-08	5877862	124413410	21950612	833	37881											
FER1L6	654463	broad.mit.edu	37	chr8	124987589	124987589	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgcatagaaatgatatgtCcaattttaatctctttcccc	5	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124987589	T	T	124987589	1	4	21	0	1	0	0	0	0	0	0	0	5872	870	30	4		4	FER1L6	8	124987589	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	574179	124987589	21376433	834	37882											
FER1L6	654463	broad.mit.edu	37	chr8	124988029	124988029	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgaatcttactcttttcaGatttgtcttatattgggatc	6	6	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124988029	T	T	124988029	1	4	21	0	1	0	0	0	0	0	0	0	5872	957	33	3		3	FER1L6	8	124988029	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	440	124988029	21375993	835	37883											
TG	7038	broad.mit.edu	37	chr8	133898771	133898772	+	Missense_Mutation	DNP	AG	TA	TA													gacctcaggctacttcagccAgcacgacctgttctcttccc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	133898772	TA	TA	133898771	3	4	21	1	0	0	0	0	1	0	0	0	15936	188	7	5	1188	5	TG	8	133898771	Missense_Mutation	DNP	AG	TCGA-05-4424-01A-22D-1855-08	8910742	133898771	12465251	836	37884											
TG	7038	broad.mit.edu	37	chr8	133925400	133925400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcccagcggaaaccatccGcttcctccaaggggaccact	9	16	0	0	rs146594373		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133925400	T	T	133925400	3	4	21	1	0	0	0	0	1	0	0	0	15936	1087	38	3	4346	3	TG	8	133925400	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	26629	133925400	12438622	837	37885											
ST3GAL1	6482	broad.mit.edu	37	chr8	134472025	134472025	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtcatctccccttgaagatCcggattttattgatggaggc	10	10	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134472025	A	A	134472025	2	1	21	1	0	0	0	0	0	0	0	1	15332	842	30	3		3	ST3GAL1	8	134472025	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	546625	134472025	11891997	838	37886											
COL22A1	169044	broad.mit.edu	37	chr8	139638525	139638525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacaccatgaaacctctGctggcttttctggaagtaaa	7	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139638525	T	T	139638525	1	4	21	0	1	0	0	0	0	0	0	0	3713	1334	46	3		3	COL22A1	8	139638525	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5166500	139638525	6725497	839	37887											
TRAPPC9	83696	broad.mit.edu	37	chr8	141262976	141262976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaggctgcaaagggaaCtgggcaagggtttcctctag	13	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141262976	A	A	141262976	3	1	21	1	0	0	0	0	1	0	0	0	16589	564	20	3	1147	3	TRAPPC9	8	141262976	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1624451	141262976	5101046	840	37888											
EIF2C2	27161	broad.mit.edu	37	chr8	141567357	141567357	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaggagcaaaggggctgttCaggccgagggcatcccggag	18	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141567357	A	A	141567357	1	1	21	0	1	0	0	0	0	0	0	0	5046	841	29	3		3	EIF2C2	8	141567357	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	304381	141567357	4796665	841	37889											
TSNARE1	203062	broad.mit.edu	37	chr8	143435962	143435962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctacccactaccatcccCtcctccccgcccccacttcc	1	27	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143435962	A	A	143435962	1	1	21	0	1	0	0	0	0	0	0	0	16755	696	24	2		2	TSNARE1	8	143435962	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1868605	143435962	2928060	842	37890											
DMRT1	1761	broad.mit.edu	37	chr9	968030	968030	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctggcttggtttccctctCgagcagctctcctattagta	8	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	968030	T	T	968030	3	4	21	1	0	0	0	0	1	0	0	0	4625	893	31	4	1031	4	DMRT1	9	968030	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08		968030	140245401	843	37891											
DMRT3	58524	broad.mit.edu	37	chr9	990652	990652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccccagtcccttggctGggcctctgcagccccctttc	9	18	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	990652	T	T	990652	3	4	21	1	0	0	0	0	1	0	0	0	4627	1348	47	2	1072	2	DMRT3	9	990652	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	22622	990652	140222779	844	37892											
PTPRD	5789	broad.mit.edu	37	chr9	8331607	8331607	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggactgaaatgggtccatCttggccaaactgttcttttg	10	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8331607	A	A	8331607	3	1	21	1	0	0	0	0	1	0	0	0	12907	913	32	3	241	3	PTPRD	9	8331607	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	7340955	8331607	132881824	845	37893											
PTPRD	5789	broad.mit.edu	37	chr9	8528584	8528584	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagtagaaacagtaacaagAccctacctgatcgtaactgc	7	10	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8528584	T	T	8528584	1	4	21	0	1	0	0	0	0	0	0	0	12907	290	10	5		5	PTPRD	9	8528584	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	196977	8528584	132684847	846	37894											
FREM1	158326	broad.mit.edu	37	chr9	14823206	14823206	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgtaatgttaaagcagatCccatgcaaagtaccgccatg	8	9	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14823206	A	A	14823206	2	1	21	1	0	0	0	0	0	0	0	1	6104	842	30	3		3	FREM1	9	14823206	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	6294622	14823206	126390225	847	37895											
DENND4C	55667	broad.mit.edu	37	chr9	19305278	19305278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcagtggtcccttttcagTaatactagttacttatatat	5	7	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19305278	C	C	19305278	1	2	21	0	1	0	0	0	0	0	0	0	4475	1653	57	5		5	DENND4C	9	19305278	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	4482072	19305278	121908153	848	37896											
SLC24A2	25769	broad.mit.edu	37	chr9	19785893	19785893	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacataataattcagaaccGtagtcaagaaaagcattaaa	5	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19785893	A	A	19785893	1	1	21	0	1	0	0	0	0	0	0	0	14580	1160	40	4		4	SLC24A2	9	19785893	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	480615	19785893	121427538	849	37897											
MLLT3	4300	broad.mit.edu	37	chr9	20413979	20413979	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctgagagttcttcagaatCtgaaatgggcggccttttac	12	8	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20413979	A	A	20413979	3	1	21	1	0	0	0	0	1	0	0	0	9721	913	32	3	869	3	MLLT3	9	20413979	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	628086	20413979	120799452	850	37898											
IFNB1	3456	broad.mit.edu	37	chr9	21077762	21077762	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggagcttctgacactgaAaattgctgcttctttgtagg	10	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21077762	G	G	21077762	3	3	21	1	0	0	0	0	1	0	0	0	7616	14	1	5	460	5	IFNB1	9	21077762	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	663783	21077762	120135669	851	37899											
IFNA7	3444	broad.mit.edu	37	chr9	21202097	21202097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctgaggcagatcacagCccagagagcagatggatttg	15	8	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21202097	A	A	21202097	3	1	21	1	0	0	0	0	1	0	0	0	7612	739	26	3	505	3	IFNA7	9	21202097	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	124335	21202097	120011334	852	37900											
KIF24	347240	broad.mit.edu	37	chr9	34259739	34259739	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcaggtcaatgagtgaagtCaattaacaaagtgcatactg	11	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34259739	T	T	34259739	1	4	21	0	1	0	0	0	0	0	0	0	8362	841	29	4		4	KIF24	9	34259739	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	13057642	34259739	106953692	853	37901											
DCTN3	11258	broad.mit.edu	37	chr9	34614163	34614163	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcttccactaaacttccTgcctcatcacggactcccac	3	18	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34614163	C	C	34614163	1	2	21	0	1	0	0	0	0	0	0	0	4341	1567	55	5		5	DCTN3	9	34614163	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	354424	34614163	106599268	854	37902											
ZCCHC7	84186	broad.mit.edu	37	chr9	37126589	37126589	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtcatccagctgtcagAtgggtcagaggtcatcactt	12	9	5	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37126589	G	G	37126589	3	3	21	1	0	0	0	0	1	0	0	0	17719	333	12	5	262	5	ZCCHC7	9	37126589	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	2512426	37126589	104086842	855	37903											
FRMPD1	22844	broad.mit.edu	37	chr9	37746358	37746358	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaacttcctggggggttggAaacaaacatcccccagagaa	11	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37746358	C	C	37746358	2	2	21	1	0	0	0	0	0	0	0	1	6117	233	9	5		5	FRMPD1	9	37746358	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	619769	37746358	103467073	856	37904											
PGM5	5239	broad.mit.edu	37	chr9	71006459	71006459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatttttagttatgggacCttatgtgagaaaagttctgt	9	4	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71006459	A	A	71006459	3	1	21	1	0	0	0	0	1	0	0	0	11896	681	24	2	725	2	PGM5	9	71006459	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	33260101	71006459	70206972	857	37905											
RORB	6096	broad.mit.edu	37	chr9	77275585	77275585	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggagacatgtcaatacacCatggaagagctgcaccagct	10	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77275585	T	T	77275585	2	4	21	1	0	0	0	0	0	0	0	1	13640	581	21	4		4	RORB	9	77275585	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	6269126	77275585	63937846	858	37906											
FLJ46321	389763	broad.mit.edu	37	chr9	84608624	84608624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcttacagaaagtgtccGgacaacagaggatggcagac	12	8	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84608624	T	T	84608624	3	4	21	1	0	0	0	0	1	0	0	0	5990	1116	39	1	3253	1	FLJ46321	9	84608624	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	7333039	84608624	56604807	859	37907											
NTRK2	4915	broad.mit.edu	37	chr9	87366928	87366928	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggtggtgattgcgtctGtggtgggattttgccttttg	16	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87366928	A	A	87366928	3	1	21	1	0	0	0	0	1	0	0	0	10802	1377	48	4	1366	4	NTRK2	9	87366928	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2758304	87366928	53846503	860	37908											
ZCCHC6	79670	broad.mit.edu	37	chr9	88925683	88925683	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatggaagaacttcacaaTtggcacctttgctgttgtaa	8	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88925683	C	C	88925683	3	2	21	1	0	0	0	0	1	0	0	0	17718	1493	52	5	1211	5	ZCCHC6	9	88925683	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1558755	88925683	52287748	861	37909											
SHC3	53358	broad.mit.edu	37	chr9	91727548	91727548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaccccaagtactgcaaGgggaaaaaatgtaaatcgtg	10	8	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91727548	A	A	91727548	1	1	21	0	1	0	0	0	0	0	0	0	14385	1015	35	4		4	SHC3	9	91727548	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2801865	91727548	49485883	862	37910											
SECISBP2	79048	broad.mit.edu	37	chr9	91943726	91943726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagaagcaacccaagtgGggacctgtccactctgtctc	9	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91943726	T	T	91943726	3	4	21	1	0	0	0	0	1	0	0	0	14119	1241	43	2	744	2	SECISBP2	9	91943726	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	216178	91943726	49269705	863	37911											
TMOD1	7111	broad.mit.edu	37	chr9	100315698	100315699	+	Intron	DNP	GG	TT	TT													tgcaggtaagaggcgttccaGgagctttccacatcctccag							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	100315699	TT	TT	100315698	1	4	21	0	1	0	0	0	0	0	0	0	16356	1015	35	2		2	TMOD1	9	100315698	Intron	DNP	GG	TCGA-05-4424-01A-22D-1855-08	8371972	100315698	40897733	864	37912											
GABBR2	9568	broad.mit.edu	37	chr9	101369535	101369548	+	Intron	DEL	CGTAAATGCAGAAT	-	-													gataataaacttgaggactaCgtaaatgcagaatcgcatgt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101369548	-	-	101369535	6	5	21	0	1	1	0	1	0	0	0	0	6216	551	19	0		0	GABBR2	9	101369535	Intron	DEL	CGTAAATGCAGAAT	TCGA-05-4424-01A-22D-1855-08	1053837	101369535	39843896	865	37913											
COL15A1	1306	broad.mit.edu	37	chr9	101807016	101807016	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatatatcttcctgttttaGggtgaacctggaatgcatgg	11	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101807016	T	T	101807016	5	4	21	1	0	0	0	0	0	0	1	0	3704	1014	35	2	2745	2	COL15A1	9	101807016	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	437481	101807016	39406415	866	37914											
BAAT	570	broad.mit.edu	37	chr9	104124958	104124958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctatggcttgttcagCgtgtgctttgctgttgatag	12	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104124958	A	A	104124958	3	1	21	1	0	0	0	0	1	0	0	0	1285	768	27	3	251	3	BAAT	9	104124958	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2317942	104124958	37088473	867	37915											
OR13D1	286365	broad.mit.edu	37	chr9	107457137	107457137	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgggctccactgagtgtgtCctcctggctgtgatggccta	13	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107457137	A	A	107457137	2	1	21	1	0	0	0	0	0	0	0	1	11034	842	30	3		3	OR13D1	9	107457137	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	3332179	107457137	33756294	868	37916											
SLC44A1	23446	broad.mit.edu	37	chr9	108126844	108126844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattttcctaggcagtcctGttcagaatgagcaaggcttt	9	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108126844	T	T	108126844	3	4	21	1	0	0	0	0	1	0	0	0	14749	1377	48	3	1134	3	SLC44A1	9	108126844	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	669707	108126844	33086587	869	37917											
EPB41L4B	54566	broad.mit.edu	37	chr9	112030810	112030810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagccttagtaattctacCcacaaaaaccagggtttgga	7	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112030810	A	A	112030810	1	1	21	0	1	0	0	0	0	0	0	0	5198	638	22	2		2	EPB41L4B	9	112030810	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3903966	112030810	29182621	870	37918											
UGCG	7357	broad.mit.edu	37	chr9	114676855	114676855	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacactaatgtattctataGaaataatttttatatcattt	3	4	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114676855	C	C	114676855	1	2	21	0	1	0	0	0	0	0	0	0	17065	957	33	4		4	UGCG	9	114676855	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2646045	114676855	26536576	871	37919											
SLC46A2	57864	broad.mit.edu	37	chr9	115648836	115648836	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggtagatcttgttgtacAaggtggatgtcaccacgccg	13	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115648836	G	G	115648836	3	3	21	1	0	0	0	0	1	0	0	0	14759	131	5	5	161	5	SLC46A2	9	115648836	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	971981	115648836	25564595	872	37920											
TLR4	7099	broad.mit.edu	37	chr9	120474743	120474743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttaatattgacaggaaacCccatccagagtttagccctg	7	12	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120474743	A	A	120474743	3	1	21	1	0	0	0	0	1	0	0	0	16076	623	22	2	347	2	TLR4	9	120474743	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4825907	120474743	20738688	873	37921											
PSMD5	5711	broad.mit.edu	37	chr9	123589225	123589225	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaaggagattttgcacAggatttgcatagtttataaa	8	4	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123589225	C	C	123589225	1	2	21	0	1	0	0	0	0	0	0	0	12807	203	7	5		5	PSMD5	9	123589225	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	3114482	123589225	17624206	874	37922											
NDUFA8	4702	broad.mit.edu	37	chr9	124910549	124910550	+	Nonsense_Mutation	DNP	TT	AG	AG													aggctctgcacagtgacgttTtatctgcctggaaaagaaag							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	124910550	AG	AG	124910549	4	1	21	1	0	0	0	0	0	1	0	0	10366	1850	64	5	303	5	NDUFA8	9	124910549	Nonsense_Mutation	DNP	TT	TCGA-05-4424-01A-22D-1855-08	1321324	124910549	16302882	875	37923											
OR1L6	392390	broad.mit.edu	37	chr9	125512544	125512544	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgtggttatgaaaccaCggcattgcctgctcatgcta	10	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125512544	T	T	125512544	3	4	21	1	0	0	0	0	1	0	0	0	11060	527	19	4	420	4	OR1L6	9	125512544	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	601995	125512544	15700887	876	37924											
STXBP1	6812	broad.mit.edu	37	chr9	130442361	130442361	+	Intron	SNP	A	C	C													tgccaagtgacatgttctacAgatcatctggccttggttcc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130442361	C	C	130442361	1	2	21	0	1	0	0	0	0	0	0	0	15470	203	7	5		5	STXBP1	9	130442361	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	4929817	130442361	10771070	877	37925	209	2									
STXBP1	6812	broad.mit.edu	37	chr9	130442371	130442371	+	Intron	SNP	G	T	T													catgttctacagatcatctgGccttggttcctatcagcact							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130442371	T	T	130442371	1	4	21	0	1	0	0	0	0	0	0	0	15470	1218	42	3		3	STXBP1	9	130442371	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	10	130442371	10771060	878	37926	209	2									
TTC16	158248	broad.mit.edu	37	chr9	130479240	130479240	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccacgtgttccaaagcatcTgtgatgtaaaaccaaaggtc	9	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130479240	A	A	130479240	3	1	21	1	0	0	0	0	1	0	0	0	16809	1580	55	5	142	5	TTC16	9	130479240	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	36869	130479240	10734191	879	37927											
PPP2R4	5524	broad.mit.edu	37	chr9	131873298	131873298	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccctgtccccacatgtcttCtaagctgttggaggtagtgg	11	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131873298	T	T	131873298	1	4	21	0	1	0	0	0	0	0	0	0	12492	928	32	4		4	PPP2R4	9	131873298	5'Flank	SNP	C	TCGA-05-4424-01A-22D-1855-08	1394058	131873298	9340133	880	37928											
C9orf78	51759	broad.mit.edu	37	chr9	132594139	132594139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactctgactggagtccagCcccaactgctcacagccaaa	9	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132594139	A	A	132594139	1	1	21	0	1	0	0	0	0	0	0	0	2522	754	26	3		3	C9orf78	9	132594139	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	720841	132594139	8619292	881	37929											
NCS1	23413	broad.mit.edu	37	chr9	132982036	132982036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttctccgagttcatccaGgcgctgtcggtgacctcacg	12	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132982036	T	T	132982036	3	4	21	1	0	0	0	0	1	0	0	0	10335	991	35	2	289	2	NCS1	9	132982036	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	387897	132982036	8231395	882	37930											
BAT2L1	84726	broad.mit.edu	37	chr9	134312224	134312224	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtggttgtgcatgacctgtCtattccagaggcacacccga	11	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134312224	G	G	134312224	1	3	21	0	1	0	0	0	0	0	0	0	1325	928	32	4		4	BAT2L1	9	134312224	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1330188	134312224	6901207	883	37931											
GTF3C4	9329	broad.mit.edu	37	chr9	135553434	135553434	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggaccccacggtcagtcAgactttcatgttggataggg	12	10	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135553434	C	C	135553434	3	2	21	1	0	0	0	0	1	0	0	0	6940	188	7	5	434	5	GTF3C4	9	135553434	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1241210	135553434	5659997	884	37932											
SURF6	6838	broad.mit.edu	37	chr9	136199369	136199369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccagcccgcccaaggacCcagctcccgctcaccttatt	7	20	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136199369	A	A	136199369	1	1	21	0	1	0	0	0	0	0	0	0	15524	638	22	2		2	SURF6	9	136199369	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	645935	136199369	5014062	885	37933											
FCN2	2220	broad.mit.edu	37	chr9	137772709	137772709	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcctgggcgctgccacCctgctgctctctttcctggg	14	15	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137772709	A	A	137772709	2	1	21	1	0	0	0	0	0	0	0	1	5849	610	22	2		2	FCN2	9	137772709	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1573340	137772709	3440722	886	37934											
OBP2A	29991	broad.mit.edu	37	chr9	138440492	138440492	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtcgtctccttttagcatCtgctccctgcagggccgtgc	11	14	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138440492	G	G	138440492	1	3	21	0	1	0	0	0	0	0	0	0	10905	928	32	4		4	OBP2A	9	138440492	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	667783	138440492	2772939	887	37935											
PNPLA7	375775	broad.mit.edu	37	chr9	140400281	140400281	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatcgcacaagggtgtggtCaggtctgaatcgcacagtgc	13	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140400281	A	A	140400281	1	1	21	0	1	0	0	0	0	0	0	0	12265	841	29	3		3	PNPLA7	9	140400281	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1959789	140400281	813150	888	37936											
CACNA1B	774	broad.mit.edu	37	chr9	140880947	140880947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgctcttcttgctcttcCtgttcattgtggtcttcgcc	8	14	5	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140880947	A	A	140880947	3	1	21	1	0	0	0	0	1	0	0	0	2565	680	24	2	1906	2	CACNA1B	9	140880947	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	480666	140880947	332484	889	37937											
AKR1E2	83592	broad.mit.edu	37	chr10	4879575	4879575	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccagttttagaataccatAcagaactgctgagggacgta	9	8	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4879575	G	G	4879575	1	3	21	0	1	0	0	0	0	0	0	0	474	406	14	5		5	AKR1E2	10	4879575	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08		4879575	130655172	890	37938											
AKR1C2	1646	broad.mit.edu	37	chr10	5045733	5045733	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgagttttatagactcTgacaagctgtgaaataaaca	8	7	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5045733	C	C	5045733	1	2	21	0	1	0	0	0	0	0	0	0	470	1595	55	5		5	AKR1C2	10	5045733	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	166158	5045733	130489014	891	37939											
AKR1C4	1109	broad.mit.edu	37	chr10	5242256	5242256	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaggttggactggccatccGaagcaagattgcagatggca	14	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5242256	C	C	5242256	3	2	21	1	0	0	0	0	1	0	0	0	472	1058	37	4	203	4	AKR1C4	10	5242256	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	196523	5242256	130292491	892	37940											
ASB13	79754	broad.mit.edu	37	chr10	5693200	5693200	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcaggcctcgtgcagggGggacgctgtgtacaggggag	19	9	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5693200	A	A	5693200	3	1	21	1	0	0	0	0	1	0	0	0	1021	1232	43	4	494	4	ASB13	10	5693200	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	450944	5693200	129841547	893	37941											
SFMBT2	57713	broad.mit.edu	37	chr10	7269847	7269847	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagggaggggcttcctgCgccccatgctgcttgtgata	14	11	0	2	rs143424241		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7269847	A	A	7269847	2	1	21	1	0	0	0	0	0	0	0	1	14271	755	27	3		3	SFMBT2	10	7269847	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1576647	7269847	128264900	894	37942											
ITIH5	80760	broad.mit.edu	37	chr10	7684001	7684001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccgtagtgaaggcataaCgggaaatgatggtagacttc	12	6	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7684001	A	A	7684001	3	1	21	1	0	0	0	0	1	0	0	0	7977	536	19	3	2825	3	ITIH5	10	7684001	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	414154	7684001	127850746	895	37943											
KIN	22944	broad.mit.edu	37	chr10	7804404	7804404	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcatatgtattaaatggtCtgcaaacagatttacctggt	9	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7804404	T	T	7804404	1	4	21	0	1	0	0	0	0	0	0	0	8386	928	32	4		4	KIN	10	7804404	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	120403	7804404	127730343	896	37944											
ATP5C1	509	broad.mit.edu	37	chr10	7830195	7830195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctcgcgcgggtgtcgctGggctgtcggcctggaccttg	16	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7830195	T	T	7830195	3	4	21	1	0	0	0	0	1	0	0	0	1153	1348	47	2	27	2	ATP5C1	10	7830195	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	25791	7830195	127704552	897	37945											
SEC61A2	55176	broad.mit.edu	37	chr10	12185050	12185050	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcctttgcctcctgggttCaagcgattcttatgcctcag	9	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12185050	A	A	12185050	1	1	21	0	1	0	0	0	0	0	0	0	14114	841	29	3		3	SEC61A2	10	12185050	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4354855	12185050	123349697	898	37946											
SEC61A2	55176	broad.mit.edu	37	chr10	12185210	12185210	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagaggtatgcgtgtcttttCtgtctccacactcctactca	7	12	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12185210	G	G	12185210	1	3	21	0	1	0	0	0	0	0	0	0	14114	928	32	4		4	SEC61A2	10	12185210	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	160	12185210	123349537	899	37947											
SEC61A2	55176	broad.mit.edu	37	chr10	12198911	12198911	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcttgattttacaggtactGagtttgagggtgcagtcata	12	5	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12198911	C	C	12198911	3	2	21	1	0	0	0	0	1	0	0	0	14114	1291	45	4	652	4	SEC61A2	10	12198911	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	13701	12198911	123335836	900	37948											
CAMK1D	57118	broad.mit.edu	37	chr10	12867623	12867623	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatgagaaaactacacctcGgcagcagcctggacagttca	9	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12867623	C	C	12867623	3	2	21	1	0	0	0	0	1	0	0	0	2623	1116	39	4	1011	4	CAMK1D	10	12867623	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	668712	12867623	122667124	901	37949											
PRPF18	8559	broad.mit.edu	37	chr10	13629019	13629019	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactcagtgggttcgcggcCgccggcccagtgaggctggg	17	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13629019	T	T	13629019	1	4	21	0	1	0	0	0	0	0	0	0	12669	667	23	4		4	PRPF18	10	13629019	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	761396	13629019	121905728	902	37950											
FAM171A1	221061	broad.mit.edu	37	chr10	15290733	15290733	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacatagatgggaccatccAccagcaccggcgttccatta	9	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15290733	C	C	15290733	3	2	21	1	0	0	0	0	1	0	0	0	5535	159	6	5	2029	5	FAM171A1	10	15290733	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1661714	15290733	120244014	903	37951											
ITGA8	8516	broad.mit.edu	37	chr10	15726137	15726137	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcacaggcctaggaaacaTcaaagacaaaaaaatacatt	7	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15726137	A	A	15726137	1	1	21	0	1	0	0	0	0	0	0	0	7952	1450	50	5		5	ITGA8	10	15726137	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	435404	15726137	119808610	904	37952											
SLC39A12	221074	broad.mit.edu	37	chr10	18292251	18292251	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactggatcttcacagtcacTgctgggatgttcttatattt	9	8	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18292251	A	A	18292251	2	1	21	1	0	0	0	0	0	0	0	1	14729	1567	55	5		5	SLC39A12	10	18292251	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	2566114	18292251	117242496	905	37953											
BMI1	648	broad.mit.edu	37	chr10	22615511	22615511	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaagtaccgagctttagctCtcttttgtatcatgcgtatt	8	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22615511	T	T	22615511	1	4	21	0	1	0	0	0	0	0	0	0	1461	928	32	4		4	BMI1	10	22615511	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4323260	22615511	112919236	906	37954											
MYO3A	53904	broad.mit.edu	37	chr10	26285528	26285528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgaagcactaatggtaaGgcaatttaaattgtatgtgc	9	5	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26285528	T	T	26285528	1	4	21	0	1	0	0	0	0	0	0	0	10170	1015	35	2		2	MYO3A	10	26285528	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3670017	26285528	109249219	907	37955											
MYO3A	53904	broad.mit.edu	37	chr10	26457774	26457774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaaatacaggagaaaaGgaaagaaagcgctataataa	8	5	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26457774	T	T	26457774	3	4	21	1	0	0	0	0	1	0	0	0	10170	1000	35	2	3347	2	MYO3A	10	26457774	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	172246	26457774	109076973	908	37956											
GAD2	2572	broad.mit.edu	37	chr10	26506631	26506631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccggggcggccaaggtcGgcccgcggggtccaagcagt	19	13	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26506631	T	T	26506631	1	4	21	0	1	0	0	0	0	0	0	0	6240	1131	39	1		1	GAD2	10	26506631	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	48857	26506631	109028116	909	37957											
ANKRD26	22852	broad.mit.edu	37	chr10	27306526	27306526	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtttgacttgaccaagttCtaccatattcctttctatat	4	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27306526	T	T	27306526	3	4	21	1	0	0	0	0	1	0	0	0	654	922	32	4	741	4	ANKRD26	10	27306526	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	799895	27306526	108228221	910	37958											
MTPAP	55149	broad.mit.edu	37	chr10	30659789	30659789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctcaagtccagggctaCtgctagttcttggtactggc	13	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30659789	A	A	30659789	1	1	21	0	1	0	0	0	0	0	0	0	10050	580	20	3		3	MTPAP	10	30659789	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3353263	30659789	104874958	911	37959											
ZEB1	6935	broad.mit.edu	37	chr10	31809433	31809433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagttctcctcagggcatGgtgcaagctgttgttctgcc	11	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31809433	T	T	31809433	3	4	21	1	0	0	0	0	1	0	0	0	17749	1348	47	2	1210	2	ZEB1	10	31809433	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1149644	31809433	103725314	912	37960											
ZEB1	6935	broad.mit.edu	37	chr10	31810851	31810851	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccttgaaagtgatccagcCaaatggaaatcaggtaaaaa	8	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31810851	G	G	31810851	3	3	21	1	0	0	0	0	1	0	0	0	17749	594	21	4	2628	4	ZEB1	10	31810851	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1418	31810851	103723896	913	37961											
C10orf68	79741	broad.mit.edu	37	chr10	33093962	33093962	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagactgatatagaaagcttGagaggtgctttgggaagacg	15	4	0	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33093962	C	C	33093962	3	2	21	1	0	0	0	0	1	0	0	0	1624	1281	45	4	880	4	C10orf68	10	33093962	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1283111	33093962	102440785	914	37962											
ANKRD30A	91074	broad.mit.edu	37	chr10	37451564	37451564	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgattgatgataaatctcTtttgctttttagagcctccg	7	7	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37451564	C	C	37451564	1	2	21	0	1	0	0	0	0	0	0	0	658	1624	56	5		5	ANKRD30A	10	37451564	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	4357602	37451564	98083183	915	37963											
ANKRD30A	91074	broad.mit.edu	37	chr10	37508354	37508354	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagaaaaatgaatgttgaTgtgagtagtacgatatataa	9	2	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37508354	A	A	37508354	3	1	21	1	0	0	0	0	1	0	0	0	658	1461	51	5	3680	5	ANKRD30A	10	37508354	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	56790	37508354	98026393	916	37964											
ZNF239	8187	broad.mit.edu	37	chr10	44053404	44053404	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcacactgtccctgtttcTggaaataggagaagatgctt	9	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44053404	C	C	44053404	3	2	21	1	0	0	0	0	1	0	0	0	17917	1588	55	5	1256	5	ZNF239	10	44053404	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	6545050	44053404	91481343	917	37965											
RBP3	5949	broad.mit.edu	37	chr10	48387913	48387913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccggagagcatctgcaGgtcagcccccaggatctcgg	13	14	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48387913	T	T	48387913	3	4	21	1	0	0	0	0	1	0	0	0	13265	991	35	2	794	2	RBP3	10	48387913	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4334509	48387913	87146834	918	37966											
PGBD3	267004	broad.mit.edu	37	chr10	50724809	50724809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacgggttgtacagttaggtCggcttttttccatttgcaaa	10	7	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50724809	T	T	50724809	3	4	21	1	0	0	0	0	1	0	0	0	11877	884	31	4	1433	4	PGBD3	10	50724809	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2336896	50724809	84809938	919	37967											
SLC18A3	6572	broad.mit.edu	37	chr10	50820453	50820453	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctctgcaagcccactgGccagctctggctcagggccc	12	17	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50820453	T	T	50820453	1	4	21	0	1	0	0	0	0	0	0	0	14540	1218	42	3		3	SLC18A3	10	50820453	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	95644	50820453	84714294	920	37968											
PCDH15	65217	broad.mit.edu	37	chr10	56367780	56367780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgagaagacttgcacaCataaggaatttttcaaaata	7	5	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56367780	A	A	56367780	1	1	21	0	1	0	0	0	0	0	0	0	11605	493	17	3		3	PCDH15	10	56367780	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	5547327	56367780	79166967	921	37969											
FAM13C	220965	broad.mit.edu	37	chr10	61014171	61014171	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgtatcggtcataaagCggctttatgaggttcttgtc	10	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61014171	A	A	61014171	2	1	21	1	0	0	0	0	0	0	0	1	5500	755	27	3		3	FAM13C	10	61014171	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	4646391	61014171	74520576	922	37970											
ANK3	288	broad.mit.edu	37	chr10	61822847	61822847	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatcaaatgattaaataaaTatgaacactaaattcgatta	3	4	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61822847	C	C	61822847	1	2	21	0	1	0	0	0	0	0	0	0	622	1421	49	5		5	ANK3	10	61822847	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	808676	61822847	73711900	923	37971											
CTNNA3	29119	broad.mit.edu	37	chr10	68979401	68979401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttcccagggttgctgcCtgaggttctggtggggttgt	16	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68979401	A	A	68979401	3	1	21	1	0	0	0	0	1	0	0	0	4048	680	24	2	1932	2	CTNNA3	10	68979401	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	7156554	68979401	66555346	924	37972											
DDX50	79009	broad.mit.edu	37	chr10	70695825	70695825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagttaaatctaaaagcatgGatgccatcaggtatgctttc	8	7	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70695825	T	T	70695825	3	4	21	1	0	0	0	0	1	0	0	0	4401	1174	41	3	1627	3	DDX50	10	70695825	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1716424	70695825	64838922	925	37973											
HK1	3098	broad.mit.edu	37	chr10	71146055	71146055	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggttaattacacaggactCtcctggtgctttttatgttg	9	8	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71146055	G	G	71146055	1	3	21	0	1	0	0	0	0	0	0	0	7257	928	32	4		4	HK1	10	71146055	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	450230	71146055	64388692	926	37974											
KIAA1274	27143	broad.mit.edu	37	chr10	72300921	72300921	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacccaggcactggcttcGtgttcagctgcctcagcggc	13	14	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72300921	A	A	72300921	3	1	21	1	0	0	0	0	1	0	0	0	8290	1145	40	4	2030	4	KIAA1274	10	72300921	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1154866	72300921	63233826	927	37975											
CDH23	64072	broad.mit.edu	37	chr10	73405795	73405795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtggatttcaggggaggCgagggtagggtagaagattc	21	3	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73405795	A	A	73405795	1	1	21	0	1	0	0	0	0	0	0	0	3138	783	27	3		3	CDH23	10	73405795	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1104874	73405795	62128952	928	37976											
CDH23	64072	broad.mit.edu	37	chr10	73464725	73464725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtcctaccgcatgccgGtgggcatgccccgcatggac	14	14	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73464725	T	T	73464725	3	4	21	1	0	0	0	0	1	0	0	0	3138	1261	44	3	3112	3	CDH23	10	73464725	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	58930	73464725	62070022	929	37977											
FUT11	170384	broad.mit.edu	37	chr10	75533499	75533499	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctttgagccccacattgcCcagccctcacacatggactg	8	16	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75533499	G	G	75533499	2	3	21	1	0	0	0	0	0	0	0	1	6163	610	22	4		4	FUT11	10	75533499	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	2068774	75533499	60001248	930	37978											
MYST4	23522	broad.mit.edu	37	chr10	76789167	76789167	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtcgatacagagttcaaaGagggaaacccagcaaccatg	10	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76789167	A	A	76789167	3	1	21	1	0	0	0	0	1	0	0	0	10199	943	33	4	4647	4	MYST4	10	76789167	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1255668	76789167	58745580	931	37979											
NRG3	10718	broad.mit.edu	37	chr10	83635474	83635474	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttccccaaggccatggaGaccaccaccactaccacttc	5	18	1	1	rs147736439	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83635474	T	T	83635474	3	4	21	1	0	0	0	0	1	0	0	0	10744	933	33	3	380	3	NRG3	10	83635474	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6846307	83635474	51899273	932	37980											
CDHR1	92211	broad.mit.edu	37	chr10	85970714	85970714	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaggctctctgcagcaTgagtgcctacccagacaagt	12	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85970714	C	C	85970714	1	2	21	0	1	0	0	0	0	0	0	0	3148	1479	51	5		5	CDHR1	10	85970714	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2335240	85970714	49564033	933	37981											
FAM190B	54462	broad.mit.edu	37	chr10	86150652	86150652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaccttaacatgtatctGgttttgctgcctagaagagg	10	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86150652	T	T	86150652	1	4	21	0	1	0	0	0	0	0	0	0	5569	1363	47	2		2	FAM190B	10	86150652	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	179938	86150652	49384095	934	37982											
IFIT1B	439996	broad.mit.edu	37	chr10	91144225	91144225	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagattcattaccactacggCcgtttccaagaacatcatgg	8	11	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91144225	A	A	91144225	2	1	21	1	0	0	0	0	0	0	0	1	7592	726	26	3		3	IFIT1B	10	91144225	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	4993573	91144225	44390522	935	37983											
PCGF5	84333	broad.mit.edu	37	chr10	93024135	93024135	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatttcaaaaaatatgcaaaAtacttttgaattcaacatta	2	5	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93024135	T	T	93024135	1	4	21	0	1	0	0	0	0	0	0	0	11671	116	4	5		5	PCGF5	10	93024135	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1879910	93024135	42510612	936	37984											
CPEB3	22849	broad.mit.edu	37	chr10	93897334	93897334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagaaggaagagttgacCctggagggggtccaccaatt	14	8	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93897334	A	A	93897334	1	1	21	0	1	0	0	0	0	0	0	0	3834	638	22	2		2	CPEB3	10	93897334	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	873199	93897334	41637413	937	37985											
LGI1	9211	broad.mit.edu	37	chr10	95552545	95552545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgactgtaaactgaaatgGctagtggaatggcttggcca	13	6	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95552545	T	T	95552545	3	4	21	1	0	0	0	0	1	0	0	0	8823	1212	42	3	571	3	LGI1	10	95552545	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1655211	95552545	39982202	938	37986											
CYP2C19	1557	broad.mit.edu	37	chr10	96534730	96534730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaataaaagcatacaaatAcaatgaaaatatgaatctaa	4	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96534730	T	T	96534730	1	4	21	0	1	0	0	0	0	0	0	0	4199	406	14	5		5	CYP2C19	10	96534730	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	982185	96534730	39000017	939	37987											
CC2D2B	387707	broad.mit.edu	37	chr10	97776052	97776052	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaggcactggtcctctTgggaacgtcagtgttagaag	13	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97776052	A	A	97776052	4	1	21	1	0	0	0	0	0	1	0	0	2755	1821	63	5	521	5	CC2D2B	10	97776052	Nonsense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1241322	97776052	37758695	940	37988											
TLL2	7093	broad.mit.edu	37	chr10	98192713	98192713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagtgtggtattctccCggccatctgcaacacagtca	11	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98192713	A	A	98192713	3	1	21	1	0	0	0	0	1	0	0	0	16069	652	23	1	2748	1	TLL2	10	98192713	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	416661	98192713	37342034	941	37989											
RRP12	23223	broad.mit.edu	37	chr10	99138990	99138990	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacccttcccaatcccttcTgtggaggttccaggactgtg	10	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99138990	A	A	99138990	1	1	21	0	1	0	0	0	0	0	0	0	13797	1595	55	5		5	RRP12	10	99138990	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	946277	99138990	36395757	942	37990											
WNT8B	7479	broad.mit.edu	37	chr10	102239783	102239783	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcagtggtaagaaaaacctCagccacagctccctggaccc	9	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102239783	T	T	102239783	1	4	21	0	1	0	0	0	0	0	0	0	17524	841	29	4		4	WNT8B	10	102239783	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3100793	102239783	33294964	943	37991											
PPRC1	23082	broad.mit.edu	37	chr10	103906712	103906712	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagaggtgggctcccgatgGaatgtcaagcgccatcagga	14	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103906712	C	C	103906712	3	2	21	1	0	0	0	0	1	0	0	0	12511	1183	41	4	3997	4	PPRC1	10	103906712	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1666929	103906712	31628035	944	37992											
GBF1	8729	broad.mit.edu	37	chr10	104123116	104123116	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagaacatgggaaatcAggatgcagtgatctggagga	13	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104123116	G	G	104123116	2	3	21	1	0	0	0	0	0	0	0	1	6333	175	7	5		5	GBF1	10	104123116	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	216404	104123116	31411631	945	37993											
GBF1	8729	broad.mit.edu	37	chr10	104129046	104129046	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacagtattccatttggccCatcgtcatggtgacatcctg	9	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104129046	T	T	104129046	3	4	21	1	0	0	0	0	1	0	0	0	6333	594	21	4	3139	4	GBF1	10	104129046	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5930	104129046	31405701	946	37994											
TMEM180	79847	broad.mit.edu	37	chr10	104233400	104233400	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgctggggcgtctacgcGgtggtgcgggggctcttcct	19	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104233400	T	T	104233400	2	4	21	1	0	0	0	0	0	0	0	1	16222	1103	39	1		1	TMEM180	10	104233400	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	104354	104233400	31301347	947	37995											
OBFC1	79991	broad.mit.edu	37	chr10	105642415	105642415	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgccaccttatctttgtcCtcctcagctggtctgcgtgt	8	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105642415	A	A	105642415	1	1	21	0	1	0	0	0	0	0	0	0	10902	696	24	2		2	OBFC1	10	105642415	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	1409015	105642415	29892332	948	37996											
SORCS3	22986	broad.mit.edu	37	chr10	106802766	106802766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacatctgtattcatgccCagcagtggttccttgagact	8	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106802766	A	A	106802766	1	1	21	0	1	0	0	0	0	0	0	0	15046	609	21	2		2	SORCS3	10	106802766	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1160351	106802766	28731981	949	37997											
SORCS1	114815	broad.mit.edu	37	chr10	108338837	108338837	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaacagctggtggctactgGgaatcatttacctatgagct	11	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108338837	A	A	108338837	1	1	21	0	1	0	0	0	0	0	0	0	15044	1247	43	4		4	SORCS1	10	108338837	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1536071	108338837	27195910	950	37998											
SORCS1	114815	broad.mit.edu	37	chr10	108427397	108427397	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcagtataacacgtgcTgaaaggcagcaaaggttggc	12	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108427397	A	A	108427397	1	1	21	0	1	0	0	0	0	0	0	0	15044	1595	55	5		5	SORCS1	10	108427397	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	88560	108427397	27107350	951	37999											
NRAP	4892	broad.mit.edu	37	chr10	115406740	115406740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctggagtgatcatagctGggaagctgccctttcccctg	12	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115406740	T	T	115406740	3	4	21	1	0	0	0	0	1	0	0	0	10733	1348	47	2	4389	2	NRAP	10	115406740	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6979343	115406740	20128007	952	38000											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199317	118199317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcttgcctcccttagCtggttcataatccttcattt	4	13	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118199317	A	A	118199317	1	1	21	0	1	0	0	0	0	0	0	0	12247	812	28	3		3	PNLIPRP3	10	118199317	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2792577	118199317	17335430	953	38001											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199421	118199421	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acattatcttccacctctcaGagcgcttcttggaaaattct	5	12	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118199421	T	T	118199421	1	4	21	0	1	0	0	0	0	0	0	0	12247	957	33	3		3	PNLIPRP3	10	118199421	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	104	118199421	17335326	954	38002											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118359482	118359482	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggtcctactttggaaccatCccatttggagagagaggcag	12	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118359482	T	T	118359482	1	4	21	0	1	0	0	0	0	0	0	0	12245	870	30	4		4	PNLIPRP1	10	118359482	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	160061	118359482	17175265	955	38003											
SLC18A2	6571	broad.mit.edu	37	chr10	119012872	119012872	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagccttaaaaaaatagccTgcagtcaccagatttgtctg	7	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119012872	A	A	119012872	1	1	21	0	1	0	0	0	0	0	0	0	14539	1595	55	5		5	SLC18A2	10	119012872	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	653390	119012872	16521875	956	38004											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122263398	122263398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctggctctataaaaatcCtttggtgcaatcagataaca	7	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122263398	A	A	122263398	3	1	21	1	0	0	0	0	1	0	0	0	12389	681	24	2	131	2	PPAPDC1A	10	122263398	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3250526	122263398	13271349	957	38005											
WDR11	55717	broad.mit.edu	37	chr10	122624731	122624731	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccatttttacaggtatctAcaattcataaattatattcc	2	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122624731	G	G	122624731	1	3	21	0	1	0	0	0	0	0	0	0	17400	406	14	5		5	WDR11	10	122624731	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	361333	122624731	12910016	958	38006											
ATE1	11101	broad.mit.edu	37	chr10	123596233	123596233	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgaaaatcaactttacCttatatttcatcttgggaca	5	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123596233	T	T	123596233	2	4	21	1	0	0	0	0	0	0	0	1	1082	695	24	4		4	ATE1	10	123596233	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	971502	123596233	11938514	959	38007											
DMBT1	1755	broad.mit.edu	37	chr10	124357566	124357566	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctccctagggctcactctCtacctctggacaaatgtttt	6	15	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124357566	T	T	124357566	1	4	21	0	1	0	0	0	0	0	0	0	4617	928	32	4		4	DMBT1	10	124357566	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	761333	124357566	11177181	960	38008											
DMBT1	1755	broad.mit.edu	37	chr10	124399744	124399744	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accatccaggtcgaggaagtCcagtatggcaattttgacgt	11	9	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124399744	A	A	124399744	2	1	21	1	0	0	0	0	0	0	0	1	4617	842	30	3		3	DMBT1	10	124399744	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	42178	124399744	11135003	961	38009											
IKZF5	64376	broad.mit.edu	37	chr10	124754317	124754317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttgtccattcattggaCaactggaaattgatcaaaaa	7	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124754317	A	A	124754317	1	1	21	0	1	0	0	0	0	0	0	0	7688	493	17	3		3	IKZF5	10	124754317	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	354573	124754317	10780430	962	38010											
ADAM12	8038	broad.mit.edu	37	chr10	128018971	128018971	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaagctgagaaaaggagAggaactcaccttggagtcga	12	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128018971	G	G	128018971	1	3	21	0	1	0	0	0	0	0	0	0	236	319	11	5		5	ADAM12	10	128018971	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	3264654	128018971	7515776	963	38011											
C10orf90	118611	broad.mit.edu	37	chr10	128153107	128153107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcttgggagcttcctaCttggcaaccatttgtcccct	11	12	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128153107	A	A	128153107	1	1	21	0	1	0	0	0	0	0	0	0	1634	580	20	3		3	C10orf90	10	128153107	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	134136	128153107	7381640	964	38012											
MKI67	4288	broad.mit.edu	37	chr10	129906292	129906292	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catctgctttcctgatacttCtcttgggtcgttgctttgtg	9	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129906292	T	T	129906292	3	4	21	1	0	0	0	0	1	0	0	0	9691	913	32	4	5970	4	MKI67	10	129906292	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1753185	129906292	5628455	965	38013											
DPYSL4	10570	broad.mit.edu	37	chr10	134010510	134010510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccacccaggacgccacCacttctcttcccagatgtac	6	19	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134010510	A	A	134010510	1	1	21	0	1	0	0	0	0	0	0	0	4789	609	21	2		2	DPYSL4	10	134010510	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4104218	134010510	1524237	966	38014											
B4GALNT4	338707	broad.mit.edu	37	chr11	373573	373573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcgtgggagggggttacGcgctgtctccttatcctgtg	14	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	373573	T	T	373573	1	4	21	0	1	0	0	0	0	0	0	0	1274	1102	38	3		3	B4GALNT4	11	373573	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08		373573	134632943	967	38015											
PHRF1	57661	broad.mit.edu	37	chr11	607393	607393	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgccccttgcctctgccgCgtctaagatctcaagcagag	9	15	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	607393	T	T	607393	3	4	21	1	0	0	0	0	1	0	0	0	11956	768	27	4	1984	4	PHRF1	11	607393	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	233820	607393	134399123	968	38016											
MUC2	4583	broad.mit.edu	37	chr11	1082526	1082526	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgtgtgagcttgcatctgtGagcgccgggccacactctgc	14	13	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1082526	T	T	1082526	1	4	21	0	1	0	0	0	0	0	0	0	10069	1305	45	3		3	MUC2	11	1082526	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	475133	1082526	133923990	969	38017											
MUC5B	727897	broad.mit.edu	37	chr11	1154331	1154331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagtgtccggcccccacCctaagcctgtcagattccac	8	17	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1154331	A	A	1154331	1	1	21	0	1	0	0	0	0	0	0	0	10073	638	22	2		2	MUC5B	11	1154331	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	71805	1154331	133852185	970	38018											
TH	7054	broad.mit.edu	37	chr11	2192844	2192845	+	Intron	DNP	AG	CT	CT													tgagcctggggctgccagccAggctggggagtagcagaggc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	2192845	CT	CT	2192844	1	2	21	0	1	0	0	0	0	0	0	0	15961	203	7	5		5	TH	11	2192844	Intron	DNP	AG	TCGA-05-4424-01A-22D-1855-08	1038513	2192844	132813672	971	38019											
KCNQ1	3784	broad.mit.edu	37	chr11	2594026	2594026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggcgtctgcacaggaggCtcccagcctgcggttcctgg	14	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2594026	A	A	2594026	1	1	21	0	1	0	0	0	0	0	0	0	8152	812	28	3		3	KCNQ1	11	2594026	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	401182	2594026	132412490	972	38020											
OR52B4	143496	broad.mit.edu	37	chr11	4389127	4389127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaagaatggtggtgtaCctcagtgggtagcatatggc	14	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4389127	A	A	4389127	3	1	21	1	0	0	0	0	1	0	0	0	11206	506	18	3	549	3	OR52B4	11	4389127	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1795101	4389127	130617389	973	38021											
OR52K2	119774	broad.mit.edu	37	chr11	4470543	4470543	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggccctgtggaagcagaTaaggaggaagagaattccca	14	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4470543	C	C	4470543	1	2	21	0	1	0	0	0	0	0	0	0	11218	1421	49	5		5	OR52K2	11	4470543	5'Flank	SNP	T	TCGA-05-4424-01A-22D-1855-08	81416	4470543	130535973	974	38022											
OR52R1	119695	broad.mit.edu	37	chr11	4825053	4825053	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacacaccaacttcagcacAgccatgtgctcacagtatga	7	14	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4825053	T	T	4825053	2	4	21	1	0	0	0	0	0	0	0	1	11225	175	7	5		5	OR52R1	11	4825053	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	354510	4825053	130181463	975	38023											
OR52A5	390054	broad.mit.edu	37	chr11	5153245	5153246	+	Silent	DNP	GG	AT	AT													aaatattatgtcaaaccctaGgattgcaaaggcaacaaata							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	5153246	AT	AT	5153245	2	1	21	1	0	0	0	0	0	0	0	1	11204	991	35	4		4	OR52A5	11	5153245	Silent	DNP	GG	TCGA-05-4424-01A-22D-1855-08	328192	5153245	129853271	976	38024											
OR51V1	283111	broad.mit.edu	37	chr11	5220986	5220986	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatatcttttcagagaaaaGagtctaagcattctggtatg	8	6	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5220986	C	C	5220986	2	2	21	1	0	0	0	0	0	0	0	1	11201	929	33	4		4	OR51V1	11	5220986	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	67741	5220986	129785530	977	38025											
OR51V1	283111	broad.mit.edu	37	chr11	5221848	5221848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggtattgctgctccatgCcagaaaatccagtgagaaga	12	8	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5221848	A	A	5221848	3	1	21	1	0	0	0	0	1	0	0	0	11201	739	26	3	885	3	OR51V1	11	5221848	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	862	5221848	129784668	978	38026											
HBE1	3046	broad.mit.edu	37	chr11	5289936	5289936	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacggctttatacctacattCctagacaaccctgacctcaa	4	14	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5289936	A	A	5289936	1	1	21	0	1	0	0	0	0	0	0	0	7046	870	30	3		3	HBE1	11	5289936	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	68088	5289936	129716580	979	38027											
OR51B4	79339	broad.mit.edu	37	chr11	5322428	5322428	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgacagtcccatcacagtgAtgtgaaatactaggacacag	9	9	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5322428	T	T	5322428	3	4	21	1	0	0	0	0	1	0	0	0	11184	333	12	5	186	5	OR51B4	11	5322428	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	32492	5322428	129684088	980	38028											
OR51M1	390059	broad.mit.edu	37	chr11	5411240	5411240	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctggcctgcacagatatCaccttcaataatctgtatgg	8	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5411240	G	G	5411240	2	3	21	1	0	0	0	0	0	0	0	1	11197	816	29	4		4	OR51M1	11	5411240	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	88812	5411240	129595276	981	38029											
OR51I1	390063	broad.mit.edu	37	chr11	5462321	5462321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacccatagccaatatacGgttgtgagtgagcacagtga	11	9	0	4	rs141201376		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5462321	T	T	5462321	3	4	21	1	0	0	0	0	1	0	0	0	11194	1116	39	1	524	1	OR51I1	11	5462321	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	51081	5462321	129544195	982	38030											
OR52N4	390072	broad.mit.edu	37	chr11	5776426	5776426	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgggactgccaccttcctGagaggggtattactcattat	11	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5776426	C	C	5776426	2	2	21	1	0	0	0	0	0	0	0	1	11223	1277	45	4		4	OR52N4	11	5776426	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	314105	5776426	129230090	983	38031											
OR52N1	79473	broad.mit.edu	37	chr11	5809676	5809676	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcagatggccacacagTggtccagggccatgagcatg	15	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5809676	A	A	5809676	3	1	21	1	0	0	0	0	1	0	0	0	11221	1696	59	5	594	5	OR52N1	11	5809676	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	33250	5809676	129196840	984	38032											
OR52E6	390078	broad.mit.edu	37	chr11	5862468	5862468	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagacagcatagaggatcctGatatgggagagaataataag	12	4	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5862468	T	T	5862468	2	4	21	1	0	0	0	0	0	0	0	1	11211	1280	45	3		3	OR52E6	11	5862468	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	52792	5862468	129144048	985	38033											
OR52E4	390081	broad.mit.edu	37	chr11	5905568	5905568	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatccccccttcttcctcCtgctaggaataccaggactg	6	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5905568	T	T	5905568	2	4	21	1	0	0	0	0	0	0	0	1	11210	680	24	4		4	OR52E4	11	5905568	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	43100	5905568	129100948	986	38034											
OR56A4	120793	broad.mit.edu	37	chr11	6024334	6024334	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtgggtttccactgagGccctgtatctgtcccaataa	11	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6024334	A	A	6024334	2	1	21	1	0	0	0	0	0	0	0	1	11229	1190	42	4		4	OR56A4	11	6024334	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	118766	6024334	128982182	987	38035											
CCKBR	887	broad.mit.edu	37	chr11	6291464	6291464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtggctgctgtccggaCtactcatggtgccctacccc	10	17	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6291464	A	A	6291464	3	1	21	1	0	0	0	0	1	0	0	0	2909	564	20	3	560	3	CCKBR	11	6291464	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	267130	6291464	128715052	988	38036											
OR6A2	8590	broad.mit.edu	37	chr11	6816949	6816949	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgccactccatgtcattggtCtctcttactgctcttcagga	7	14	5	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6816949	A	A	6816949	1	1	21	0	1	0	0	0	0	0	0	0	11280	928	32	3		3	OR6A2	11	6816949	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	525485	6816949	128189567	989	38037											
OR10A2	341276	broad.mit.edu	37	chr11	6891129	6891129	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctacacagccccatgtacttCttcctcagaaacttatcttt	3	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6891129	T	T	6891129	2	4	21	1	0	0	0	0	0	0	0	1	10984	912	32	4		4	OR10A2	11	6891129	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	74180	6891129	128115387	990	38038											
OR2D2	120776	broad.mit.edu	37	chr11	6913519	6913519	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actatgttggtagagaaacaGaggtcagccagagacaagtt	12	6	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6913519	A	A	6913519	2	1	21	1	0	0	0	0	0	0	0	1	11088	929	33	4		4	OR2D2	11	6913519	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	22390	6913519	128092997	991	38039											
ZNF215	7762	broad.mit.edu	37	chr11	6962758	6962758	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taattattagaagttgctccAgggcaaaacttgtctcccta	7	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6962758	T	T	6962758	1	4	21	0	1	0	0	0	0	0	0	0	17897	203	7	5		5	ZNF215	11	6962758	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	49239	6962758	128043758	992	38040											
SYT9	143425	broad.mit.edu	37	chr11	7324168	7324168	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggccttccgcagtcggctCccaagggatgagtggatgag	15	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7324168	A	A	7324168	1	1	21	0	1	0	0	0	0	0	0	0	15600	870	30	3		3	SYT9	11	7324168	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	361410	7324168	127682348	993	38041											
EIF3F	8665	broad.mit.edu	37	chr11	8014290	8014290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatttgacatagttttcgGtgtgtgtattgctcttggca	10	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8014290	T	T	8014290	1	4	21	0	1	0	0	0	0	0	0	0	5058	1276	44	3		3	EIF3F	11	8014290	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	690122	8014290	126992226	994	38042											
NRIP3	56675	broad.mit.edu	37	chr11	9005043	9005043	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccagttttctctatctgtCaacccggtgtgtatgcatgc	8	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9005043	T	T	9005043	1	4	21	0	1	0	0	0	0	0	0	0	10749	841	29	4		4	NRIP3	11	9005043	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	990753	9005043	126001473	995	38043											
SCUBE2	57758	broad.mit.edu	37	chr11	9081067	9081067	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgtgttcattagtctctGaaattaagaaaaagactcac	8	6	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9081067	C	C	9081067	1	2	21	0	1	0	0	0	0	0	0	0	14058	1305	45	4		4	SCUBE2	11	9081067	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	76024	9081067	125925449	996	38044											
RNF141	50862	broad.mit.edu	37	chr11	10540598	10540598	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccatttatcaatacacttCtgacaaaagctgtgagcaca	5	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10540598	T	T	10540598	2	4	21	1	0	0	0	0	0	0	0	1	13555	912	32	4		4	RNF141	11	10540598	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1459531	10540598	124465918	997	38045											
DKK3	27122	broad.mit.edu	37	chr11	11985969	11985969	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacctggggaaataaatTagctatttctattgcacatc	6	9	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11985969	A	A	11985969	1	1	21	0	1	0	0	0	0	0	0	0	4586	1769	61	5		5	DKK3	11	11985969	3'UTR	SNP	T	TCGA-05-4424-01A-22D-1855-08	1445371	11985969	123020547	998	38046											
MICAL2	9645	broad.mit.edu	37	chr11	12265624	12265624	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atccagctgcttcttcctctCcatcaactgttgactctgct	5	15	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12265624	G	G	12265624	3	3	21	1	0	0	0	0	1	0	0	0	9663	855	30	4	2823	4	MICAL2	11	12265624	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	279655	12265624	122740892	999	38047											
MICALCL	84953	broad.mit.edu	37	chr11	12315660	12315660	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgtgctaaaaccagtcCgccccctgctgctccctagg	10	17	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12315660	T	T	12315660	3	4	21	1	0	0	0	0	1	0	0	0	9665	652	23	4	688	4	MICALCL	11	12315660	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	50036	12315660	122690856	1000	38048											
RPS13	6207	broad.mit.edu	37	chr11	17097027	17097027	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttcctctcaagatgctttcGaacagcaactgctttcttaa	6	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17097027	A	A	17097027	4	1	21	1	0	0	0	0	0	1	0	0	13734	1066	37	4	172	4	RPS13	11	17097027	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4781367	17097027	117909489	1001	38049											
UEVLD	55293	broad.mit.edu	37	chr11	18596857	18596857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattaaatgaactgctctttTagaaaactcacacatttttt	3	7	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18596857	C	C	18596857	1	2	21	0	1	0	0	0	0	0	0	0	17059	1769	61	5		5	UEVLD	11	18596857	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	1499830	18596857	116409659	1002	38050											
PTPN5	84867	broad.mit.edu	37	chr11	18750419	18750419	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggacccgaggcagggcCctgggtgagggccgagactc	17	14	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18750419	A	A	18750419	1	1	21	0	1	0	0	0	0	0	0	0	12899	638	22	2		2	PTPN5	11	18750419	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	153562	18750419	116256097	1003	38051											
PTPN5	84867	broad.mit.edu	37	chr11	18762209	18762209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgaagctcttctgcttGgaggacacgggaggcgctga	14	9	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18762209	T	T	18762209	3	4	21	1	0	0	0	0	1	0	0	0	12899	1357	47	2	873	2	PTPN5	11	18762209	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	11790	18762209	116244307	1004	38052											
PTPN5	84867	broad.mit.edu	37	chr11	18765021	18765021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatggagccggcccccttcCcccgtgttcccccagcagag	11	18	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18765021	A	A	18765021	1	1	21	0	1	0	0	0	0	0	0	0	12899	638	22	2		2	PTPN5	11	18765021	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2812	18765021	116241495	1005	38053											
PRMT3	10196	broad.mit.edu	37	chr11	20414666	20414666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatctaaatgcttcatcagGtagttagtttcagtagaaaa	7	5	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20414666	T	T	20414666	1	4	21	0	1	0	0	0	0	0	0	0	12644	1276	44	3		3	PRMT3	11	20414666	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1649645	20414666	114591850	1006	38054											
ANO5	203859	broad.mit.edu	37	chr11	22292025	22292025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttgaaacatagagttggCatgaatgagtggtttttcag	12	3	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22292025	A	A	22292025	1	1	21	0	1	0	0	0	0	0	0	0	700	725	25	3		3	ANO5	11	22292025	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1877359	22292025	112714491	1007	38055											
SLC5A12	159963	broad.mit.edu	37	chr11	26702709	26702709	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgcagggtaaatgaaGgccccaatggccacccaaaa	12	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26702709	T	T	26702709	2	4	21	1	0	0	0	0	0	0	0	1	14778	987	35	2		2	SLC5A12	11	26702709	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	4410684	26702709	108303807	1008	38056											
MPPED2	744	broad.mit.edu	37	chr11	30433061	30433061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatataattggagggttgGtcggttgaaagctgactgta	13	4	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30433061	T	T	30433061	3	4	21	1	0	0	0	0	1	0	0	0	9836	1261	44	3	121	3	MPPED2	11	30433061	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3730352	30433061	104573455	1009	38057											
MPPED2	744	broad.mit.edu	37	chr11	30602063	30602063	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagaaaaaaaaaatgtaTataaaatgagaacaaagaga	7	1	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30602063	C	C	30602063	1	2	21	0	1	0	0	0	0	0	0	0	9836	1421	49	5		5	MPPED2	11	30602063	5'Flank	SNP	T	TCGA-05-4424-01A-22D-1855-08	169002	30602063	104404453	1010	38058											
ELP4	26610	broad.mit.edu	37	chr11	31531341	31531341	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggctctaagatggcggcaGtggcaacctgcggtagtgtt	16	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31531341	C	C	31531341	3	2	21	1	0	0	0	0	1	0	0	0	5124	1029	36	4	12	4	ELP4	11	31531341	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	929278	31531341	103475175	1011	38059											
PAMR1	25891	broad.mit.edu	37	chr11	35454105	35454105	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatatcagaaggggcagtGggttcccagctggcacagaa	14	9	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35454105	T	T	35454105	2	4	21	1	0	0	0	0	0	0	0	1	11507	1335	47	2		2	PAMR1	11	35454105	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	3922764	35454105	99552411	1012	38060											
FJX1	24147	broad.mit.edu	37	chr11	35641196	35641196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcggggcgctggtctttctgGacaatgaggcgggcttggtg	19	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35641196	T	T	35641196	3	4	21	1	0	0	0	0	1	0	0	0	5958	1174	41	3	1014	3	FJX1	11	35641196	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	187091	35641196	99365320	1013	38061											
ACCS	84680	broad.mit.edu	37	chr11	44105128	44105128	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccaccggctttgcctggGtgagcagcctgcctttccag	13	14	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44105128	T	T	44105128	5	4	21	1	0	0	0	0	0	0	1	0	133	1275	44	3	1459	3	ACCS	11	44105128	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	8463932	44105128	90901388	1014	38062											
TP53I11	9537	broad.mit.edu	37	chr11	44959781	44959781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagcgatgcacctccccgtCgtcatcctccccgcccacgc	9	21	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44959781	A	A	44959781	3	1	21	1	0	0	0	0	1	0	0	0	16509	884	31	3	487	3	TP53I11	11	44959781	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	854653	44959781	90046735	1015	38063											
SYT13	57586	broad.mit.edu	37	chr11	45307615	45307615	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgggcttcgccttctcCaggtcggggtcctggtcccg	14	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45307615	A	A	45307615	2	1	21	1	0	0	0	0	0	0	0	1	15588	581	21	2		2	SYT13	11	45307615	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	347834	45307615	89698901	1016	38064											
CREB3L1	90993	broad.mit.edu	37	chr11	46338851	46338851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggagaggaggagtgggGtggtcagggccgtggcccct	21	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46338851	T	T	46338851	1	4	21	0	1	0	0	0	0	0	0	0	3888	1276	44	3		3	CREB3L1	11	46338851	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1031236	46338851	88667665	1017	38065											
LRP4	4038	broad.mit.edu	37	chr11	46889781	46889781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagctgccctagtcccaggCaccttcattagtagcccttc	7	15	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46889781	A	A	46889781	1	1	21	0	1	0	0	0	0	0	0	0	9046	725	25	3		3	LRP4	11	46889781	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	550930	46889781	88116735	1018	38066											
FNBP4	23360	broad.mit.edu	37	chr11	47746181	47746181	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggagggggtggaggtgattCtggaggtggaggtgggggtg	26	1	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47746181	T	T	47746181	3	4	21	1	0	0	0	0	1	0	0	0	6025	922	32	4	915	4	FNBP4	11	47746181	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	856400	47746181	87260335	1019	38067											
PTPRJ	5795	broad.mit.edu	37	chr11	48181433	48181433	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgaggttttagtgatgGcagatggcatgatctgagtc	14	5	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48181433	A	A	48181433	1	1	21	0	1	0	0	0	0	0	0	0	12912	1218	42	4		4	PTPRJ	11	48181433	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	435252	48181433	86825083	1020	38068											
OR4A16	81327	broad.mit.edu	37	chr11	55111056	55111056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtggctatctctaagcCgctgcactatttgaacatca	7	11	2	1	rs144905099	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55111056	A	A	55111056	3	1	21	1	0	0	0	0	1	0	0	0	11135	652	23	1	382	1	OR4A16	11	55111056	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	6929623	55111056	79895460	1021	38069											
SPRYD5	84767	broad.mit.edu	37	chr11	55648775	55648775	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagaacccctttattccaGgaagccctcttccttgtgcc	8	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55648775	T	T	55648775	1	4	21	0	1	0	0	0	0	0	0	0	15229	1015	35	2		2	SPRYD5	11	55648775	5'Flank	SNP	G	TCGA-05-4424-01A-22D-1855-08	537719	55648775	79357741	1022	38070											
OR5I1	10798	broad.mit.edu	37	chr11	55703186	55703186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctcccactgaaagagcGgatctttaagactgagagaa	9	10	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55703186	T	T	55703186	3	4	21	1	0	0	0	0	1	0	0	0	11258	1116	39	1	256	1	OR5I1	11	55703186	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	54411	55703186	79303330	1023	38071											
SLC43A3	29015	broad.mit.edu	37	chr11	57193675	57193675	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagtggatcttcaaatccCactttgtcctcctggacgga	10	11	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57193675	A	A	57193675	1	1	21	0	1	0	0	0	0	0	0	0	14748	609	21	2		2	SLC43A3	11	57193675	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	1490489	57193675	77812841	1024	38072											
OR6Q1	219952	broad.mit.edu	37	chr11	57799360	57799360	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgagtcttttctctcaaCttttggaagggacagtgagg	13	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57799360	G	G	57799360	3	3	21	1	0	0	0	0	1	0	0	0	11302	564	20	4	938	4	OR6Q1	11	57799360	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	605685	57799360	77207156	1025	38073											
OR5B21	219968	broad.mit.edu	37	chr11	58275424	58275424	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtacattggagtgtggagaTgggagtctgagtggatgatc	17	3	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58275424	C	C	58275424	3	2	21	1	0	0	0	0	1	0	0	0	11245	1464	51	5	776	5	OR5B21	11	58275424	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	476064	58275424	76731092	1026	38074											
OR4D6	219983	broad.mit.edu	37	chr11	59224956	59224956	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtggccccaacacactgGatgccttctactgttatgtg	9	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59224956	A	A	59224956	3	1	21	1	0	0	0	0	1	0	0	0	11152	1174	41	4	525	4	OR4D6	11	59224956	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	949532	59224956	75781560	1027	38075											
PLAC1L	219990	broad.mit.edu	37	chr11	59814578	59814579	+	3'UTR	INS	-	TT	TT													atggaaacttgaagctggtgINSttatgtattttgcaggaaaa							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	59814579	TT	TT	59814578	6	5	21	0	1	1	1	0	0	0	0	0	12108	1392	48	0		0	PLAC1L	11	59814578	3'UTR	INS	-	TCGA-05-4424-01A-22D-1855-08	589622	59814578	75191938	1028	38076											
MS4A14	84689	broad.mit.edu	37	chr11	60165337	60165337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcacaggctacccagatcCtgcttgctctaatcattgtg	7	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60165337	A	A	60165337	3	1	21	1	0	0	0	0	1	0	0	0	9952	680	24	2	157	2	MS4A14	11	60165337	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	350759	60165337	74841179	1029	38077											
AHNAK	79026	broad.mit.edu	37	chr11	62288697	62288697	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccacatcacctttcacttTgggacccttcaagttaaagt	5	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62288697	A	A	62288697	4	1	21	1	0	0	0	0	0	1	0	0	414	1821	63	5	4600	5	AHNAK	11	62288697	Nonsense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	2123360	62288697	72717819	1030	38078											
TUT1	64852	broad.mit.edu	37	chr11	62346149	62346149	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accccagggacacagccccgGagaatggatcccaccagctc	10	17	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62346149	A	A	62346149	2	1	21	1	0	0	0	0	0	0	0	1	16906	1161	41	4		4	TUT1	11	62346149	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	57452	62346149	72660367	1031	38079											
TUT1	64852	broad.mit.edu	37	chr11	62348608	62348608	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaagtcacccagatccaaGaagaggtcaagatcacagcc	8	13	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62348608	A	A	62348608	2	1	21	1	0	0	0	0	0	0	0	1	16906	933	33	4		4	TUT1	11	62348608	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2459	62348608	72657908	1032	38080											
ZBTB3	79842	broad.mit.edu	37	chr11	62519813	62519813	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgctcacgtgtgtgcaccgTggcatgtcgccgtagtgtgt	14	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62519813	C	C	62519813	3	2	21	1	0	0	0	0	1	0	0	0	17660	1696	59	5	254	5	ZBTB3	11	62519813	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	171205	62519813	72486703	1033	38081											
WDR74	54663	broad.mit.edu	37	chr11	62603205	62603205	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggttcctcagagccctgcaGgtcccatatcttcaaagcat	8	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62603205	C	C	62603205	3	2	21	1	0	0	0	0	1	0	0	0	17451	991	35	4	707	4	WDR74	11	62603205	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	83392	62603205	72403311	1034	38082											
WDR74	54663	broad.mit.edu	37	chr11	62606600	62606600	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttacccgtcggcctgggcGaggccacggaacatgccctc	12	16	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62606600	A	A	62606600	2	1	21	1	0	0	0	0	0	0	0	1	17451	1045	37	4		4	WDR74	11	62606600	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	3395	62606600	72399916	1035	38083											
RASGRP2	10235	broad.mit.edu	37	chr11	64502896	64502896	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggcctgccaggcccTgtgactcctaggggctgagt	15	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64502896	C	C	64502896	1	2	21	0	1	0	0	0	0	0	0	0	13183	1595	55	5		5	RASGRP2	11	64502896	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	1896296	64502896	70503620	1036	38084											
CDCA5	113130	broad.mit.edu	37	chr11	64851367	64851367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggactgcgtcccccaaaCggctcgacctcacgtctccc	8	20	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64851367	A	A	64851367	1	1	21	0	1	0	0	0	0	0	0	0	3119	551	19	3		3	CDCA5	11	64851367	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	348471	64851367	70155149	1037	38085											
TSGA10IP	254187	broad.mit.edu	37	chr11	65721189	65721189	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggccctggggcggcccagCgcaagctggaggagctgagg	21	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65721189	G	G	65721189	3	3	21	1	0	0	0	0	1	0	0	0	16743	768	27	4	1321	4	TSGA10IP	11	65721189	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	869822	65721189	69285327	1038	38086											
B3GNT1	11041	broad.mit.edu	37	chr11	66114003	66114003	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tactgccgaaagcgctcgtcGaaggtgggcaccttgcctcc	12	14	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66114003	A	A	66114003	2	1	21	1	0	0	0	0	0	0	0	1	1261	1049	37	4		4	B3GNT1	11	66114003	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	392814	66114003	68892513	1039	38087											
PELI3	246330	broad.mit.edu	37	chr11	66235598	66235598	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctctcccactctgcccaGaatggtgctggaaggaaacc	9	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66235598	A	A	66235598	5	1	21	1	0	0	0	0	0	0	1	0	11817	956	33	4	1	4	PELI3	11	66235598	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	121595	66235598	68770918	1040	38088											
IGHMBP2	3508	broad.mit.edu	37	chr11	68701365	68701365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggaggaggacgaacaGtcgaaagggaaccctggtga	17	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68701365	T	T	68701365	3	4	21	1	0	0	0	0	1	0	0	0	7661	1020	36	3	1559	3	IGHMBP2	11	68701365	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2465767	68701365	66305151	1041	38089											
SHANK2	22941	broad.mit.edu	37	chr11	70319477	70319477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatgggctgggaggtgcCggggcgaacagtgaaggtga	22	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70319477	A	A	70319477	3	1	21	1	0	0	0	0	1	0	0	0	14378	652	23	1	506	1	SHANK2	11	70319477	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1618112	70319477	64687039	1042	38090											
SHANK2	22941	broad.mit.edu	37	chr11	70507709	70507709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctcttacctttggccCctcgaagcacgaatccaaag	9	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70507709	A	A	70507709	3	1	21	1	0	0	0	0	1	0	0	0	14378	623	22	2	3665	2	SHANK2	11	70507709	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	188232	70507709	64498807	1043	38091											
PAAF1	80227	broad.mit.edu	37	chr11	73620586	73620586	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctatcaatggagtggcGgtgggtgctgctgacaactc	13	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73620586	T	T	73620586	2	4	21	1	0	0	0	0	0	0	0	1	11456	1103	39	1		1	PAAF1	11	73620586	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	3112877	73620586	61385930	1044	38092											
PGM2L1	283209	broad.mit.edu	37	chr11	74053997	74053997	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccaggtaagatgccatctCagcaaccacaacagctgcac	7	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74053997	T	T	74053997	3	4	21	1	0	0	0	0	1	0	0	0	11894	835	29	4	509	4	PGM2L1	11	74053997	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	433411	74053997	60952519	1045	38093											
ARRB1	408	broad.mit.edu	37	chr11	75001026	75001026	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagtgtgaggtcagggaggCgctgggcgcagctgttacag	19	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75001026	G	G	75001026	1	3	21	0	1	0	0	0	0	0	0	0	984	783	27	4		4	ARRB1	11	75001026	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	947029	75001026	60005490	1046	38094											
C11orf30	56946	broad.mit.edu	37	chr11	76248926	76248926	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagatgacccaggaaaagaGacattctcctgagagtccat	9	10	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76248926	C	C	76248926	3	2	21	1	0	0	0	0	1	0	0	0	1648	942	33	4	2505	4	C11orf30	11	76248926	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1247900	76248926	58757590	1047	38095											
LRRC32	2615	broad.mit.edu	37	chr11	76372213	76372213	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctcccccagcagccgctCcagcaggccgctgtacaggc	11	19	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76372213	A	A	76372213	4	1	21	1	0	0	0	0	0	1	0	0	9074	864	30	3	1568	3	LRRC32	11	76372213	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	123287	76372213	58634303	1048	38096											
ODZ4	26011	broad.mit.edu	37	chr11	78412999	78412999	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcggatgttcccaaggtcGgccacgtagagctccccatc	10	14	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78412999	T	T	78412999	2	4	21	1	0	0	0	0	0	0	0	1	10932	1103	39	1		1	ODZ4	11	78412999	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2040786	78412999	56593517	1049	38097											
PRCP	5547	broad.mit.edu	37	chr11	82571045	82571045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attacaaaaccagataatgtCcccttcattaccagtgtaga	5	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82571045	A	A	82571045	3	1	21	1	0	0	0	0	1	0	0	0	12555	855	30	3	1239	3	PRCP	11	82571045	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4158046	82571045	52435471	1050	38098											
PCF11	51585	broad.mit.edu	37	chr11	82880813	82880813	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcaatgcttttaatgccCcatcccaaggactacagttc	7	13	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82880813	G	G	82880813	3	3	21	1	0	0	0	0	1	0	0	0	11667	623	22	4	3466	4	PCF11	11	82880813	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	309768	82880813	52125703	1051	38099											
DLG2	1740	broad.mit.edu	37	chr11	83502076	83502076	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcttgttcctggcacgcGgtctcagactgaaggtcgtg	14	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83502076	A	A	83502076	1	1	21	0	1	0	0	0	0	0	0	0	4595	1131	39	4		4	DLG2	11	83502076	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	621263	83502076	51504440	1052	38100											
DLG2	1740	broad.mit.edu	37	chr11	83525934	83525934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctctccaaagatccaccCatggcagcttccagagtgga	9	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83525934	A	A	83525934	1	1	21	0	1	0	0	0	0	0	0	0	4595	609	21	2		2	DLG2	11	83525934	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	23858	83525934	51480582	1053	38101											
DLG2	1740	broad.mit.edu	37	chr11	84027986	84027986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacaaggtcctgttgaagCtggaccccccggtcctgttt	10	15	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84027986	A	A	84027986	1	1	21	0	1	0	0	0	0	0	0	0	4595	812	28	3		3	DLG2	11	84027986	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	502052	84027986	50978530	1054	38102											
FOLH1B	219595	broad.mit.edu	37	chr11	89421663	89421663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaattacatttataataGtaagaatggggtttatttta	6	1	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89421663	A	A	89421663	1	1	21	0	1	0	0	0	0	0	0	0	6038	1044	36	4		4	FOLH1B	11	89421663	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5393677	89421663	45584853	1055	38103											
NAALAD2	10003	broad.mit.edu	37	chr11	89885563	89885563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagccatatcccaaaggatGgaatcttcctggaactgcag	9	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89885563	T	T	89885563	3	4	21	1	0	0	0	0	1	0	0	0	10222	1357	47	2	729	2	NAALAD2	11	89885563	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	463900	89885563	45120953	1056	38104											
FAT3	120114	broad.mit.edu	37	chr11	92495149	92495149	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagatcaagctgccagaacGtgaccgaaagaagagaggag	13	9	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92495149	A	A	92495149	3	1	21	1	0	0	0	0	1	0	0	0	5748	1145	40	4	3811	4	FAT3	11	92495149	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2609586	92495149	42511367	1057	38105											
CNTN5	53942	broad.mit.edu	37	chr11	99932105	99932105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtggaaaaaattcctttcGtggacaattacaagtataca	7	7	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99932105	T	T	99932105	3	4	21	1	0	0	0	0	1	0	0	0	3676	1145	40	3	1172	3	CNTN5	11	99932105	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	7436956	99932105	35074411	1058	38106											
TRPC6	7225	broad.mit.edu	37	chr11	101347344	101347344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaatatgtttgaaaGgtctcagcctgacattacaa	6	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101347344	T	T	101347344	1	4	21	0	1	0	0	0	0	0	0	0	16708	1015	35	2		2	TRPC6	11	101347344	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1415239	101347344	33659172	1059	38107											
MMP13	4322	broad.mit.edu	37	chr11	102820906	102820906	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggataaggaagggtcacAtttgtctggcgtttttggat	14	4	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102820906	G	G	102820906	3	3	21	1	0	0	0	0	1	0	0	0	9745	217	8	5	585	5	MMP13	11	102820906	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1473562	102820906	32185610	1060	38108											
PDGFD	80310	broad.mit.edu	37	chr11	103780655	103780655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcttagccctttgagaacCcaacagaagctatgggcttg	10	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103780655	A	A	103780655	1	1	21	0	1	0	0	0	0	0	0	0	11754	638	22	2		2	PDGFD	11	103780655	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	959749	103780655	31225861	1061	38109											
CASP5	838	broad.mit.edu	37	chr11	104879607	104879607	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttgtccagccacgttgttCtttagcatgtggtttatcac	9	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104879607	A	A	104879607	3	1	21	1	0	0	0	0	1	0	0	0	2700	912	32	3	1228	3	CASP5	11	104879607	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1098952	104879607	30126909	1062	38110											
CASP1	834	broad.mit.edu	37	chr11	104905838	104905838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtaaaagactcaccggcCatggcttttctctcctccct	6	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104905838	A	A	104905838	1	1	21	0	1	0	0	0	0	0	0	0	2694	609	21	2		2	CASP1	11	104905838	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	26231	104905838	30100678	1063	38111											
GUCY1A2	2977	broad.mit.edu	37	chr11	106695503	106695503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggatttttaccaaggtgCttgctttgttattttttttt	8	5	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106695503	A	A	106695503	1	1	21	0	1	0	0	0	0	0	0	0	6958	812	28	3		3	GUCY1A2	11	106695503	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1789665	106695503	28311013	1064	38112											
GUCY1A2	2977	broad.mit.edu	37	chr11	106697260	106697260	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaaagctcccatcattcgtCcattttgcatgacgactttg	7	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106697260	G	G	106697260	1	3	21	0	1	0	0	0	0	0	0	0	6958	870	30	4		4	GUCY1A2	11	106697260	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1757	106697260	28309256	1065	38113											
CWF19L2	143884	broad.mit.edu	37	chr11	107274538	107274538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacttctactgtcagacCgcacaaccttttaagttcat	4	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107274538	A	A	107274538	1	1	21	0	1	0	0	0	0	0	0	0	4105	667	23	1		1	CWF19L2	11	107274538	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	577278	107274538	27731978	1066	38114											
EXPH5	23086	broad.mit.edu	37	chr11	108380887	108380887	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggctcaggttcccactccaGagatgaagcactcctttgtt	9	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108380887	A	A	108380887	2	1	21	1	0	0	0	0	0	0	0	1	5365	933	33	4		4	EXPH5	11	108380887	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1106349	108380887	26625629	1067	38115											
NCAM1	4684	broad.mit.edu	37	chr11	113102576	113102576	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaaggcagggtcaggatgaGagaggaaaacatcagcaagg	16	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113102576	C	C	113102576	1	2	21	0	1	0	0	0	0	0	0	0	10297	957	33	4		4	NCAM1	11	113102576	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	4721689	113102576	21903940	1068	38116											
NCAM1	4684	broad.mit.edu	37	chr11	113133594	113133594	+	Intron	SNP	T	A	A													tgggaggcaattctgcatccTacacctttgtctcattgctt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113133594	A	A	113133594	1	1	21	0	1	0	0	0	0	0	0	0	10297	1522	53	5		5	NCAM1	11	113133594	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	31018	113133594	21872922	1069	38117	210	2									
NCAM1	4684	broad.mit.edu	37	chr11	113133596	113133596	+	Intron	SNP	C	A	A													ggaggcaattctgcatcctaCacctttgtctcattgctttt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113133596	A	A	113133596	1	1	21	0	1	0	0	0	0	0	0	0	10297	489	17	3		3	NCAM1	11	113133596	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2	113133596	21872920	1070	38118	210	2									
BACE1	23621	broad.mit.edu	37	chr11	117163902	117163902	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagtggtcgatacctccaatGatctagggaaaaaaagaggc	12	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117163902	C	C	117163902	3	2	21	1	0	0	0	0	1	0	0	0	1286	1280	45	4	817	4	BACE1	11	117163902	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	4030306	117163902	17842614	1071	38119											
HMBS	3145	broad.mit.edu	37	chr11	118959797	118959797	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactctctcctcagttgctAtgtccaccacaggggacaag	9	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118959797	G	G	118959797	3	3	21	1	0	0	0	0	1	0	0	0	7286	449	16	5	180	5	HMBS	11	118959797	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1795895	118959797	16046719	1072	38120											
SORL1	6653	broad.mit.edu	37	chr11	121393466	121393466	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgtctggtgatgtgcagGccaaatgcagagcgatcacc	13	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121393466	C	C	121393466	1	2	21	0	1	0	0	0	0	0	0	0	15048	1218	42	4		4	SORL1	11	121393466	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2433669	121393466	13613050	1073	38121											
C11orf63	79864	broad.mit.edu	37	chr11	122805659	122805659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaactttctaagagacacGtgctcctgagccagaaaggc	10	10	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122805659	T	T	122805659	3	4	21	1	0	0	0	0	1	0	0	0	1666	1145	40	3	1588	3	C11orf63	11	122805659	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1412193	122805659	12200857	1074	38122											
TMEM225	338661	broad.mit.edu	37	chr11	123755312	123755312	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaaggccaaggctcgaCgtcatcataatcctgaccac	9	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123755312	A	A	123755312	2	1	21	1	0	0	0	0	0	0	0	1	16270	523	19	3		3	TMEM225	11	123755312	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	949653	123755312	11251204	1075	38123											
OR10G4	390264	broad.mit.edu	37	chr11	123887059	123887059	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgttgtcatttatctgAggccaggctccatggatgcc	11	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123887059	G	G	123887059	3	3	21	1	0	0	0	0	1	0	0	0	10995	295	11	5	780	5	OR10G4	11	123887059	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	131747	123887059	11119457	1076	38124											
OR10G9	219870	broad.mit.edu	37	chr11	123893753	123893753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgtgacagcgttcatcCtcacgggccttccccatgcc	9	18	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123893753	A	A	123893753	3	1	21	1	0	0	0	0	1	0	0	0	10998	681	24	2	36	2	OR10G9	11	123893753	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	6694	123893753	11112763	1077	38125											
STT3A	3703	broad.mit.edu	37	chr11	125467107	125467107	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtcagctctcagtgatAgagatgtgctttcagtacat	9	8	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125467107	G	G	125467107	1	3	21	0	1	0	0	0	0	0	0	0	15451	435	15	5		5	STT3A	11	125467107	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1573354	125467107	9539409	1078	38126											
FOXRED1	55572	broad.mit.edu	37	chr11	126141286	126141286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccaaccccccaaccatGtgggaaggaaatgtttggcc	9	14	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126141286	T	T	126141286	1	4	21	0	1	0	0	0	0	0	0	0	6093	1392	48	3		3	FOXRED1	11	126141286	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	674179	126141286	8865230	1079	38127											
FLI1	2313	broad.mit.edu	37	chr11	128642833	128642833	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctccgcgccaccacccTctacaacacggaagtgctgt	7	18	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128642833	G	G	128642833	3	3	21	1	0	0	0	0	1	0	0	0	5981	1551	54	5	556	5	FLI1	11	128642833	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	2501547	128642833	6363683	1080	38128											
KDM5A	5927	broad.mit.edu	37	chr12	463210	463211	+	Intron	INS	-	A	A													atgtattattatttttagttINSaaaaaaggatccatagaggt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	463211	A	A	463210	6	5	21	0	1	1	1	0	0	0	0	0	8203	1769	61	0		0	KDM5A	12	463210	Intron	INS	-	TCGA-05-4424-01A-22D-1855-08		463210	133388685	1081	38129											
CACNA2D4	93589	broad.mit.edu	37	chr12	1910187	1910187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctggctggctggcagagGgaagggctgggtgacactca	19	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1910187	T	T	1910187	1	4	21	0	1	0	0	0	0	0	0	0	2577	1247	43	2		2	CACNA2D4	12	1910187	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1446977	1910187	131941708	1082	38130											
CACNA1C	775	broad.mit.edu	37	chr12	2787107	2787107	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggttgggctggggttttgCggggaacgtccaggggaagg	22	5	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2787107	T	T	2787107	1	4	21	0	1	0	0	0	0	0	0	0	2566	783	27	4		4	CACNA1C	12	2787107	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	876920	2787107	131064788	1083	38131											
PRMT8	56341	broad.mit.edu	37	chr12	3701483	3701483	+	Frame_Shift_Del	DEL	G	-	-													ggaggggggaggaaatctacGggaccatatccatgaagcca							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3701483	-	-	3701483	7	5	21	1	0	1	0	1	0	0	0	0	12648	1116	39	0	1100	0	PRMT8	12	3701483	Frame_Shift_Del	DEL	G	TCGA-05-4424-01A-22D-1855-08	914376	3701483	130150412	1084	38132											
AKAP3	10566	broad.mit.edu	37	chr12	4737560	4737560	+	Frame_Shift_Del	DEL	T	-	-													tgatgctatcttactgaggcTtttggtgggtgtgggttcat							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4737560	-	-	4737560	7	5	21	1	0	1	0	1	0	0	0	0	452	1609	56	0	2061	0	AKAP3	12	4737560	Frame_Shift_Del	DEL	T	TCGA-05-4424-01A-22D-1855-08	1036077	4737560	129114335	1085	38133											
GALNT8	26290	broad.mit.edu	37	chr12	4830145	4830145	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatggaaggaaaaatgggtGagaggtcacattttcatctc	11	5	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4830145	C	C	4830145	1	2	21	0	1	0	0	0	0	0	0	0	6281	1305	45	4		4	GALNT8	12	4830145	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	92585	4830145	129021750	1086	38134											
SCNN1A	6337	broad.mit.edu	37	chr12	6465099	6465099	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaagtgtaggtggtgcaggGaatagggagatgaggcagag	20	2	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6465099	A	A	6465099	1	1	21	0	1	0	0	0	0	0	0	0	14040	1189	41	4		4	SCNN1A	12	6465099	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1634954	6465099	127386796	1087	38135											
CHD4	1108	broad.mit.edu	37	chr12	6709529	6709529	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagtcctggtggtctgtctCataaccatccacagcagtca	8	12	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6709529	G	G	6709529	3	3	21	1	0	0	0	0	1	0	0	0	3358	835	29	4	4770	4	CHD4	12	6709529	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	244430	6709529	127142366	1088	38136											
PEX5	5830	broad.mit.edu	37	chr12	7360450	7360450	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagactgcttcctccatcttGagaaaggccccaaggagagt	11	11	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7360450	C	C	7360450	1	2	21	0	1	0	0	0	0	0	0	0	11843	1305	45	4		4	PEX5	12	7360450	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	650921	7360450	126491445	1089	38137											
PEX5	5830	broad.mit.edu	37	chr12	7361763	7361763	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgccctcagcgttcgtccCaatgtgagcccaggggagga	14	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7361763	T	T	7361763	2	4	21	1	0	0	0	0	0	0	0	1	11843	581	21	4		4	PEX5	12	7361763	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1313	7361763	126490132	1090	38138											
CD163L1	283316	broad.mit.edu	37	chr12	7525912	7525912	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggtgtttagaaagatacCcaccttcacatgtgatccag	9	10	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7525912	T	T	7525912	1	4	21	0	1	0	0	0	0	0	0	0	2998	638	22	4		4	CD163L1	12	7525912	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	164149	7525912	126325983	1091	38139											
CLEC4C	170482	broad.mit.edu	37	chr12	7889881	7889882	+	Intron	DNP	CC	AA	AA													ttccagattaaggagattttCctgtgttttttgttttttgg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7889882	AA	AA	7889881	1	1	21	0	1	0	0	0	0	0	0	0	3545	870	30	3		3	CLEC4C	12	7889881	Intron	DNP	CC	TCGA-05-4424-01A-22D-1855-08	363969	7889881	125962014	1092	38140											
NECAP1	25977	broad.mit.edu	37	chr12	8245640	8245640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgaaatctaaccatggagGcagtgatgcaggtaaatcta	10	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8245640	T	T	8245640	3	4	21	1	0	0	0	0	1	0	0	0	10402	1203	42	3	687	3	NECAP1	12	8245640	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	355759	8245640	125606255	1093	38141											
ZNF705A	440077	broad.mit.edu	37	chr12	8325043	8325043	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgtgtctgttggttagGctgtggtgcagctggtgtca	16	5	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8325043	A	A	8325043	1	1	21	0	1	0	0	0	0	0	0	0	18235	1218	42	4		4	ZNF705A	12	8325043	5'Flank	SNP	G	TCGA-05-4424-01A-22D-1855-08	79403	8325043	125526852	1094	38142											
FAM90A1	55138	broad.mit.edu	37	chr12	8374849	8374849	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggcccccagctcacctcCctggatggcgctttcgggga	14	16	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8374849	T	T	8374849	3	4	21	1	0	0	0	0	1	0	0	0	5703	632	22	4	434	4	FAM90A1	12	8374849	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	49806	8374849	125477046	1095	38143											
AICDA	57379	broad.mit.edu	37	chr12	8765449	8765449	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgatggttctctgtcttaGtctgacagtgcattggccct	10	9	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8765449	C	C	8765449	1	2	21	0	1	0	0	0	0	0	0	0	422	1044	36	4		4	AICDA	12	8765449	5'Flank	SNP	G	TCGA-05-4424-01A-22D-1855-08	390600	8765449	125086446	1096	38144											
GUCY2C	2984	broad.mit.edu	37	chr12	14809565	14809565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattttctgtgaaaggaatAaaactggtcaataggttttt	8	3	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14809565	G	G	14809565	1	3	21	0	1	0	0	0	0	0	0	0	6961	377	13	5		5	GUCY2C	12	14809565	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	6044116	14809565	119042330	1097	38145											
PDE6H	5149	broad.mit.edu	37	chr12	15130908	15130909	+	5'UTR	DNP	GG	TT	TT													tatctttcactgtctaaggaGgctgaaagggaaacatcagc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15130909	TT	TT	15130908	1	4	21	0	1	0	0	0	0	0	0	0	11744	1015	35	2		2	PDE6H	12	15130908	5'UTR	DNP	GG	TCGA-05-4424-01A-22D-1855-08	321343	15130908	118720987	1098	38146											
PTPRO	5800	broad.mit.edu	37	chr12	15718719	15718719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtactggttgtttatgCctgagtggcagtggccacta	12	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15718719	A	A	15718719	1	1	21	0	1	0	0	0	0	0	0	0	12917	754	26	3		3	PTPRO	12	15718719	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	587811	15718719	118133176	1099	38147											
STRAP	11171	broad.mit.edu	37	chr12	16052990	16052990	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgtgtgcttcctggtAagaatttttattcagaataa	9	4	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16052990	T	T	16052990	1	4	21	0	1	0	0	0	0	0	0	0	15444	377	13	5		5	STRAP	12	16052990	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	334271	16052990	117798905	1100	38148											
KCNJ8	3764	broad.mit.edu	37	chr12	21919586	21919586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatatcagaaaagaacaCcatcaggtcacattttgaat	6	7	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21919586	A	A	21919586	1	1	21	0	1	0	0	0	0	0	0	0	8126	522	18	3		3	KCNJ8	12	21919586	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	5866596	21919586	111932309	1101	38149											
ETNK1	55500	broad.mit.edu	37	chr12	22826628	22826628	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacacaattaatgaaaggttCttactgtaattgaaaatgct	6	5	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22826628	G	G	22826628	1	3	21	0	1	0	0	0	0	0	0	0	5315	928	32	4		4	ETNK1	12	22826628	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	907042	22826628	111025267	1102	38150											
SOX5	6660	broad.mit.edu	37	chr12	24102629	24102629	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaaccttctaaaccaattGattttctctctgtctcttcc	2	14	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24102629	T	T	24102629	1	4	21	0	1	0	0	0	0	0	0	0	15068	1305	45	3		3	SOX5	12	24102629	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	1276001	24102629	109749266	1103	38151											
KLHDC5	57542	broad.mit.edu	37	chr12	27950466	27950466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagtgggaggtgagtgcGgatggatctaaatatatctc	16	4	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27950466	T	T	27950466	1	4	21	0	1	0	0	0	0	0	0	0	8430	1131	39	1		1	KLHDC5	12	27950466	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3847837	27950466	105901429	1104	38152											
TMTC1	83857	broad.mit.edu	37	chr12	29670309	29670309	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggactacagctctctctAtggctgcctgtgcttaggtt	11	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29670309	C	C	29670309	1	2	21	0	1	0	0	0	0	0	0	0	16383	464	16	5		5	TMTC1	12	29670309	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	1719843	29670309	104181586	1105	38153											
DNM1L	10059	broad.mit.edu	37	chr12	32884849	32884849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtgacttgtcttcttcGtaaaaggttgcctgttacaa	10	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32884849	T	T	32884849	3	4	21	1	0	0	0	0	1	0	0	0	4711	1145	40	3	1464	3	DNM1L	12	32884849	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3214540	32884849	100967046	1106	38154											
PKP2	5318	broad.mit.edu	37	chr12	33021744	33021744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatataggcgtgaaccaCcacgcacggtcccaattttt	10	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33021744	A	A	33021744	1	1	21	0	1	0	0	0	0	0	0	0	12080	522	18	3		3	PKP2	12	33021744	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	136895	33021744	100830151	1107	38155											
ALG10	84920	broad.mit.edu	37	chr12	34176900	34176900	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttctttcattttaaagtggGatcccatgattactacatta	5	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34176900	A	A	34176900	3	1	21	1	0	0	0	0	1	0	0	0	511	1174	41	4	181	4	ALG10	12	34176900	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1155156	34176900	99674995	1108	38156											
ALG10	84920	broad.mit.edu	37	chr12	34179422	34179422	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttttttgtggttaccttaGtctctgtgtttttagtttgg	10	4	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34179422	A	A	34179422	3	1	21	1	0	0	0	0	1	0	0	0	511	1029	36	4	1004	4	ALG10	12	34179422	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2522	34179422	99672473	1109	38157											
C12orf40	283461	broad.mit.edu	37	chr12	40078650	40078650	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaacaaactttgatactGtgtatttataatccttaggg	6	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40078650	A	A	40078650	1	1	21	0	1	0	0	0	0	0	0	0	1699	1392	48	4		4	C12orf40	12	40078650	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5899228	40078650	93773245	1110	38158											
LRRK2	120892	broad.mit.edu	37	chr12	40709081	40709081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttgtggaacccaagtgGctttgtaaaatcatggcaca	9	8	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40709081	T	T	40709081	3	4	21	1	0	0	0	0	1	0	0	0	9120	1212	42	3	4936	3	LRRK2	12	40709081	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	630431	40709081	93142814	1111	38159											
NELL2	4753	broad.mit.edu	37	chr12	44915987	44915987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagaaaaaaagcagttaCcaaaaacctccatttctcag	4	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44915987	T	T	44915987	1	4	21	0	1	0	0	0	0	0	0	0	10429	522	18	4		4	NELL2	12	44915987	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4206906	44915987	88935908	1112	38160											
COL2A1	1280	broad.mit.edu	37	chr12	48371152	48371152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggaccagcggggccagggGagccagggggcccaggggct	21	11	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48371152	T	T	48371152	3	4	21	1	0	0	0	0	1	0	0	0	3719	1174	41	3	1275	3	COL2A1	12	48371152	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3455165	48371152	85480743	1113	38161											
TMBIM6	7009	broad.mit.edu	37	chr12	50146437	50146437	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtataagctaacaaattaacTtggccagaatccagaggacc	8	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50146437	A	A	50146437	1	1	21	0	1	0	0	0	0	0	0	0	16106	1624	56	5		5	TMBIM6	12	50146437	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	1775285	50146437	83705458	1114	38162											
RACGAP1	29127	broad.mit.edu	37	chr12	50388297	50388297	+	Intron	DEL	A	-	-													agtctgccagcattccctggAaaaaaaaaagagctttaaat							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50388297	-	-	50388297	6	5	21	0	1	1	0	1	0	0	0	0	13085	261	9	0		0	RACGAP1	12	50388297	Intron	DEL	A	TCGA-05-4424-01A-22D-1855-08	241860	50388297	83463598	1115	38163											
LIMA1	51474	broad.mit.edu	37	chr12	50571335	50571335	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctcttgacagaggtgctttGaaatgaagctgctacagtga	12	7	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50571335	C	C	50571335	3	2	21	1	0	0	0	0	1	0	0	0	8868	1299	45	4	491	4	LIMA1	12	50571335	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	183038	50571335	83280560	1116	38164											
LIMA1	51474	broad.mit.edu	37	chr12	50571584	50571584	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtcttccttctcctgctGagaggaggccttggcttcca	10	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50571584	C	C	50571584	3	2	21	1	0	0	0	0	1	0	0	0	8868	1299	45	4	740	4	LIMA1	12	50571584	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	249	50571584	83280311	1117	38165											
LARP4	113251	broad.mit.edu	37	chr12	50822678	50822678	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcctgagaatagaatttaAataattcccatttactttca	4	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50822678	T	T	50822678	1	4	21	0	1	0	0	0	0	0	0	0	8702	29	1	5		5	LARP4	12	50822678	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	251094	50822678	83029217	1118	38166											
BIN2	51411	broad.mit.edu	37	chr12	51695872	51695872	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggtcagccagtttctcctCgtagtcttcccaaaggagat	9	12	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51695872	T	T	51695872	3	4	21	1	0	0	0	0	1	0	0	0	1439	893	31	4	1393	4	BIN2	12	51695872	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	873194	51695872	82156023	1119	38167											
KRT85	3891	broad.mit.edu	37	chr12	52758717	52758717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattctctctgagtttccCctgagtccccccagcttgct	7	16	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52758717	A	A	52758717	1	1	21	0	1	0	0	0	0	0	0	0	8570	638	22	2		2	KRT85	12	52758717	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1062845	52758717	81093178	1120	38168											
KRT2	3849	broad.mit.edu	37	chr12	53041528	53041528	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcacctgcttcttcacatGtgcgatctccccctgcagcc	6	19	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53041528	A	A	53041528	3	1	21	1	0	0	0	0	1	0	0	0	8528	1377	48	4	701	4	KRT2	12	53041528	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	282811	53041528	80810367	1121	38169											
KRT4	3851	broad.mit.edu	37	chr12	53202170	53202170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttcttcaggttgtcacCatgttggtcaaccgagatct	11	9	5	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53202170	A	A	53202170	3	1	21	1	0	0	0	0	1	0	0	0	8548	594	21	2	545	2	KRT4	12	53202170	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	160642	53202170	80649725	1122	38170											
EIF4B	1975	broad.mit.edu	37	chr12	53431372	53431372	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaaccctcctgctcgatctCagagctcagacacagagcag	8	15	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53431372	G	G	53431372	3	3	21	1	0	0	0	0	1	0	0	0	5069	827	29	4	1528	4	EIF4B	12	53431372	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	229202	53431372	80420523	1123	38171											
OR6C2	341416	broad.mit.edu	37	chr12	55846199	55846199	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagaaatttttccttcttaGaagtctcatttactacagtc	4	9	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55846199	C	C	55846199	3	2	21	1	0	0	0	0	1	0	0	0	11285	943	33	4	204	4	OR6C2	12	55846199	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2414827	55846199	78005696	1124	38172											
MYO1A	4640	broad.mit.edu	37	chr12	57440633	57440633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacaggtgagtggaattGgggagacacgtacagtttgt	16	4	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57440633	T	T	57440633	1	4	21	0	1	0	0	0	0	0	0	0	10162	1363	47	2		2	MYO1A	12	57440633	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1594434	57440633	76411262	1125	38173											
LRP1	4035	broad.mit.edu	37	chr12	57574278	57574278	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgggtgagggctgctgggCgaagcagagatgacgcagag	19	7	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57574278	T	T	57574278	1	4	21	0	1	0	0	0	0	0	0	0	9038	783	27	4		4	LRP1	12	57574278	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	133645	57574278	76277617	1126	38174											
MARS	4141	broad.mit.edu	37	chr12	57881806	57881806	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccatttcccggcgtgcctCgcggaggccgctgaactcag	12	16	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57881806	T	T	57881806	1	4	21	0	1	0	0	0	0	0	0	0	9408	899	31	4		4	MARS	12	57881806	5'Flank	SNP	C	TCGA-05-4424-01A-22D-1855-08	307528	57881806	75970089	1127	38175											
KIF5A	3798	broad.mit.edu	37	chr12	57958726	57958726	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacaaatctgtccgtgcaCgaggacaagaaccgggtgcc	12	11	1	2	rs143178113		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57958726	T	T	57958726	2	4	21	1	0	0	0	0	0	0	0	1	8375	535	19	4		4	KIF5A	12	57958726	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	76920	57958726	75893169	1128	38176											
DPY19L2	283417	broad.mit.edu	37	chr12	63987980	63987980	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatttaaaatgctctgattCattaatataaacactctgcc	3	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63987980	A	A	63987980	1	1	21	0	1	0	0	0	0	0	0	0	4781	841	29	3		3	DPY19L2	12	63987980	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6029254	63987980	69863915	1129	38177											
DPY19L2	283417	broad.mit.edu	37	chr12	64045735	64045735	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgaggaccccttgggcCtggccttcaaacccacccac	9	17	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64045735	A	A	64045735	1	1	21	0	1	0	0	0	0	0	0	0	4781	696	24	2		2	DPY19L2	12	64045735	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	57755	64045735	69806160	1130	38178											
PTPRB	5787	broad.mit.edu	37	chr12	70928675	70928675	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactctgagagcatctgcaGgatgaggtccccatagtaga	13	9	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70928675	T	T	70928675	3	4	21	1	0	0	0	0	1	0	0	0	12904	991	35	2	525	2	PTPRB	12	70928675	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6882940	70928675	62923220	1131	38179											
LGR5	8549	broad.mit.edu	37	chr12	71929009	71929009	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatatttaagatcaatttGggaagaagcattgaaatgtt	8	2	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71929009	T	T	71929009	1	4	21	0	1	0	0	0	0	0	0	0	8829	1363	47	2		2	LGR5	12	71929009	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1000334	71929009	61922886	1132	38180											
ZFC3H1	196441	broad.mit.edu	37	chr12	72057219	72057219	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accgccccgggccgagtgagGaggccttcgccgcggatagg	17	14	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72057219	A	A	72057219	3	1	21	1	0	0	0	0	1	0	0	0	17759	1174	41	4	5937	4	ZFC3H1	12	72057219	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	128210	72057219	61794676	1133	38181											
TPH2	121278	broad.mit.edu	37	chr12	72335436	72335436	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaaacgtgaagctgctaccGaaagtggcaagacagcagtt	12	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72335436	C	C	72335436	3	2	21	1	0	0	0	0	1	0	0	0	16526	1059	37	4	184	4	TPH2	12	72335436	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	278217	72335436	61516459	1134	38182											
OSBPL8	114882	broad.mit.edu	37	chr12	76853519	76853519	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactttatatttcaattccTggaaagaaaagtagaacact	5	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76853519	C	C	76853519	1	2	21	0	1	0	0	0	0	0	0	0	11377	1595	55	5		5	OSBPL8	12	76853519	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	4518083	76853519	56998376	1135	38183											
E2F7	144455	broad.mit.edu	37	chr12	77449521	77449521	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaaaagatattcagttTgccactgcttttggctcaat	6	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77449521	G	G	77449521	1	3	21	0	1	0	0	0	0	0	0	0	4912	1827	63	5		5	E2F7	12	77449521	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	596002	77449521	56402374	1136	38184											
NAV3	89795	broad.mit.edu	37	chr12	78334814	78334814	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcacttcattgcttaaGcatgtcgttctttttttctc	5	9	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78334814	C	C	78334814	1	2	21	0	1	0	0	0	0	0	0	0	10279	986	34	4		4	NAV3	12	78334814	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	885293	78334814	55517081	1137	38185											
NAV3	89795	broad.mit.edu	37	chr12	78513135	78513135	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagggaaaaagcccccCtcaggcattggaagatcgac	12	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78513135	T	T	78513135	2	4	21	1	0	0	0	0	0	0	0	1	10279	668	24	4		4	NAV3	12	78513135	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	178321	78513135	55338760	1138	38186											
MYF5	4617	broad.mit.edu	37	chr12	81112769	81112769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctctccagttgccagcaCcgattcacagcctgcaactc	6	17	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81112769	A	A	81112769	3	1	21	1	0	0	0	0	1	0	0	0	10121	507	18	3	717	3	MYF5	12	81112769	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2599634	81112769	52739126	1139	38187											
C12orf26	84190	broad.mit.edu	37	chr12	82783570	82783570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattttgattctttaatagCagtttttacttttattttca	3	4	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82783570	T	T	82783570	1	4	21	0	1	0	0	0	0	0	0	0	1692	725	25	4		4	C12orf26	12	82783570	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1670801	82783570	51068325	1140	38188											
POC1B	282809	broad.mit.edu	37	chr12	89896389	89896389	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggacccagaaacaagagaGattattctcatggatcttgt	9	7	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89896389	C	C	89896389	1	2	21	0	1	0	0	0	0	0	0	0	12271	957	33	4		4	POC1B	12	89896389	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	7112819	89896389	43955506	1141	38189											
C12orf12	196477	broad.mit.edu	37	chr12	91348087	91348087	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaggccgcggcctctgcGgccccagcgcttcttcctgc	13	19	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91348087	A	A	91348087	3	1	21	1	0	0	0	0	1	0	0	0	1689	1116	39	4	791	4	C12orf12	12	91348087	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1451698	91348087	42503808	1142	38190											
CCDC41	51134	broad.mit.edu	37	chr12	94818049	94818049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagcccgtccattttgCacaaatattccttggttctg	8	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94818049	A	A	94818049	1	1	21	0	1	0	0	0	0	0	0	0	2840	725	25	3		3	CCDC41	12	94818049	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3469962	94818049	39033846	1143	38191											
CCDC38	120935	broad.mit.edu	37	chr12	96292380	96292380	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacagatctctggtcattttCtcgaaggaactcttcaaagg	8	9	5	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96292380	A	A	96292380	4	1	21	1	0	0	0	0	0	1	0	0	2837	922	32	3	1236	3	CCDC38	12	96292380	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1474331	96292380	37559515	1144	38192											
CCDC38	120935	broad.mit.edu	37	chr12	96292419	96292419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagtgcatcatcttggaGctttttctctgcttttttta	8	9	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96292419	T	T	96292419	3	4	21	1	0	0	0	0	1	0	0	0	2837	971	34	3	1275	3	CCDC38	12	96292419	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	39	96292419	37559476	1145	38193											
ANKS1B	56899	broad.mit.edu	37	chr12	99898273	99898273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttcttggggaaggtgcCcttgcaatttctaaggagca	12	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99898273	A	A	99898273	3	1	21	1	0	0	0	0	1	0	0	0	689	622	22	2	2683	2	ANKS1B	12	99898273	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3605854	99898273	33953622	1146	38194											
ANO4	121601	broad.mit.edu	37	chr12	101520766	101520766	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgattcaggagatgatgtAtgaagcagaactggaacgtc	12	6	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101520766	G	G	101520766	3	3	21	1	0	0	0	0	1	0	0	0	699	449	16	5	2779	5	ANO4	12	101520766	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1622493	101520766	32331129	1147	38195											
GLT8D2	83468	broad.mit.edu	37	chr12	104397019	104397019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagtggcacccatcctccCtgctgcagcacaaatcacca	6	17	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104397019	A	A	104397019	3	1	21	1	0	0	0	0	1	0	0	0	6534	681	24	2	899	2	GLT8D2	12	104397019	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2876253	104397019	29454876	1148	38196											
SLC41A2	84102	broad.mit.edu	37	chr12	105238410	105238410	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttactcctgtaatataaAatgtaaaagtaattaaaaca	3	4	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105238410	C	C	105238410	1	2	21	0	1	0	0	0	0	0	0	0	14744	29	1	5		5	SLC41A2	12	105238410	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	841391	105238410	28613485	1149	38197											
CRY1	1407	broad.mit.edu	37	chr12	107393682	107393682	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattatcagaattttttttTaaagtattaaacaataagct	4	3	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107393682	A	A	107393682	1	1	21	0	1	0	0	0	0	0	0	0	3935	1769	61	5		5	CRY1	12	107393682	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2155272	107393682	26458213	1150	38198											
BTBD11	121551	broad.mit.edu	37	chr12	108010866	108010866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgctcttcctctgcagCtcctcctggatgctggggcc	12	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108010866	A	A	108010866	3	1	21	1	0	0	0	0	1	0	0	0	1548	811	28	3	2137	3	BTBD11	12	108010866	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	617184	108010866	25841029	1151	38199											
CMKLR1	1240	broad.mit.edu	37	chr12	108685637	108685637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaagcatgccggtctccCtctcattcatagaagtcctc	6	14	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108685637	A	A	108685637	3	1	21	1	0	0	0	0	1	0	0	0	3611	681	24	2	22	2	CMKLR1	12	108685637	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	674771	108685637	25166258	1152	38200											
DAO	1610	broad.mit.edu	37	chr12	109294182	109294182	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctcttgcctctcctaggtCatccacaactatggccatgg	7	15	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109294182	A	A	109294182	2	1	21	1	0	0	0	0	0	0	0	1	4264	813	29	3		3	DAO	12	109294182	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	608545	109294182	24557713	1153	38201											
ANKRD13A	88455	broad.mit.edu	37	chr12	110463653	110463653	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaccaccaccctcccacctCctgttttgttgttatttttt	3	15	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110463653	A	A	110463653	1	1	21	0	1	0	0	0	0	0	0	0	641	870	30	3		3	ANKRD13A	12	110463653	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1169471	110463653	23388242	1154	38202											
MYL2	4633	broad.mit.edu	37	chr12	111349026	111349026	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggacgaggggaggggaactGagacggagggtggggggctg	25	4	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111349026	T	T	111349026	1	4	21	0	1	0	0	0	0	0	0	0	10141	1305	45	3		3	MYL2	12	111349026	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	885373	111349026	22502869	1155	38203											
MAPKAPK5	8550	broad.mit.edu	37	chr12	112308955	112308955	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgacttgatgacacccCagttcaccccttattatgta	7	11	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112308955	G	G	112308955	3	3	21	1	0	0	0	0	1	0	0	0	9383	595	21	4	576	4	MAPKAPK5	12	112308955	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	959929	112308955	21542940	1156	38204											
TMEM116	89894	broad.mit.edu	37	chr12	112369362	112369362	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttaagatgtcctttcccaAcattctttccaatccattag	3	11	1	1	rs112564343		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112369362	T	T	112369362	1	4	21	0	1	0	0	0	0	0	0	0	16153	58	2	5		5	TMEM116	12	112369362	3'UTR	SNP	A	TCGA-05-4424-01A-22D-1855-08	60407	112369362	21482533	1157	38205											
PTPN11	5781	broad.mit.edu	37	chr12	112883986	112883986	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtattttctaaaattttctActctgctcataatgcgtctt	4	8	5	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112883986	G	G	112883986	1	3	21	0	1	0	0	0	0	0	0	0	12886	406	14	5		5	PTPN11	12	112883986	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	514624	112883986	20967909	1158	38206											
RBM19	9904	broad.mit.edu	37	chr12	114397086	114397086	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtcgaagttcaggtagtCactggccggcttgctcttcc	13	11	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114397086	A	A	114397086	3	1	21	1	0	0	0	0	1	0	0	0	13229	826	29	3	2460	3	RBM19	12	114397086	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1513100	114397086	19454809	1159	38207											
MED13L	23389	broad.mit.edu	37	chr12	116420396	116420396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaattcctattctctcCctttctgtaacactggagag	9	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116420396	A	A	116420396	3	1	21	1	0	0	0	0	1	0	0	0	9524	622	22	2	1704	2	MED13L	12	116420396	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2023310	116420396	17431499	1160	38208											
MED13L	23389	broad.mit.edu	37	chr12	116675300	116675300	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgatgtattacacccaCtaggttgggttcatctcccc	7	12	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116675300	G	G	116675300	3	3	21	1	0	0	0	0	1	0	0	0	9524	565	20	4	6469	4	MED13L	12	116675300	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	254904	116675300	17176595	1161	38209											
NOS1	4842	broad.mit.edu	37	chr12	117768666	117768666	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcaggtccaccaagggcCggccgttgaccgcaagaatg	13	13	1	2	rs74738204		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117768666	T	T	117768666	3	4	21	1	0	0	0	0	1	0	0	0	10636	652	23	4	4207	4	NOS1	12	117768666	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1093366	117768666	16083229	1162	38210											
KSR2	283455	broad.mit.edu	37	chr12	118020147	118020147	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggatctgcggggaccagcGtggcactgacagtgtgtcta	16	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118020147	A	A	118020147	3	1	21	1	0	0	0	0	1	0	0	0	8654	1145	40	4	1723	4	KSR2	12	118020147	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	251481	118020147	15831748	1163	38211											
TAOK3	51347	broad.mit.edu	37	chr12	118684080	118684080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagtggatgcccgtcacCaagttgggccgcttggtcaa	14	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118684080	A	A	118684080	1	1	21	0	1	0	0	0	0	0	0	0	15668	609	21	2		2	TAOK3	12	118684080	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	663933	118684080	15167815	1164	38212											
KDM2B	84678	broad.mit.edu	37	chr12	121878685	121878685	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcctttagtccctccacccActggacatccagggtccgga	8	16	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121878685	T	T	121878685	3	4	21	1	0	0	0	0	1	0	0	0	8195	159	6	5	530	5	KDM2B	12	121878685	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	3194605	121878685	11973210	1165	38213											
ZCCHC8	55596	broad.mit.edu	37	chr12	122968121	122968121	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctacaacctgcagaaaaCaagtcaaaaaatattgctat	4	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122968121	A	A	122968121	1	1	21	0	1	0	0	0	0	0	0	0	17720	493	17	3		3	ZCCHC8	12	122968121	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1089436	122968121	10883774	1166	38214											
ZNF664	144348	broad.mit.edu	37	chr12	124496642	124496642	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacagtcttgtaactgtaGtaatcataaggaaattttct	6	5	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124496642	T	T	124496642	1	4	21	0	1	0	0	0	0	0	0	0	18199	1044	36	3		3	ZNF664	12	124496642	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	1528521	124496642	9355253	1167	38215											
RIMBP2	23504	broad.mit.edu	37	chr12	130907029	130907029	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgtcacgggccgggacctCtgaggaccagcgctgccacg	14	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130907029	G	G	130907029	3	3	21	1	0	0	0	0	1	0	0	0	13472	912	32	4	747	4	RIMBP2	12	130907029	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	6410387	130907029	2944866	1168	38216											
GPR133	283383	broad.mit.edu	37	chr12	131466440	131466448	+	In_Frame_Del	DEL	TCTTTTTTC	-	-													tttcctcaggggtcacgtttTcttttttctggaagacacaa					rs74744169	byFrequency;by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131466448	-	-	131466440	7	5	21	1	0	1	0	1	0	0	0	0	6708	1783	62	0	340	0	GPR133	12	131466440	In_Frame_Del	DEL	TCTTTTTTC	TCGA-05-4424-01A-22D-1855-08	559411	131466440	2385455	1169	38217											
ULK1	8408	broad.mit.edu	37	chr12	132400970	132400970	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctttgacttcccgaagAcccccagctcccagaacctg	6	19	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132400970	G	G	132400970	3	3	21	1	0	0	0	0	1	0	0	0	17101	275	10	5	1984	5	ULK1	12	132400970	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	934530	132400970	1450925	1170	38218											
EP400	57634	broad.mit.edu	37	chr12	132530139	132530139	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctttgtgccagcggtcatGtgcggtcatttttctaacgc	11	10	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132530139	A	A	132530139	1	1	21	0	1	0	0	0	0	0	0	0	5191	1392	48	4		4	EP400	12	132530139	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	129169	132530139	1321756	1171	38219											
P2RX2	22953	broad.mit.edu	37	chr12	133196907	133196907	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcctcatcaagaacagcatCcactaccccaaattccactt	2	16	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133196907	A	A	133196907	2	1	21	1	0	0	0	0	0	0	0	1	11434	845	30	3		3	P2RX2	12	133196907	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	666768	133196907	654988	1172	38220											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20246068	20246068	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaccgattcctatactctcTttgacagcagtttggaattc	7	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20246068	A	A	20246068	1	1	21	0	1	0	0	0	0	0	0	0	9821	1624	56	5		5	MPHOSPH8	13	20246068	3'UTR	SNP	T	TCGA-05-4424-01A-22D-1855-08		20246068	94923810	1173	38221											
LATS2	26524	broad.mit.edu	37	chr13	21563266	21563266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgggcccgtgggggccgactCcggggaaaaggtagtccacg	18	12	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21563266	A	A	21563266	3	1	21	1	0	0	0	0	1	0	0	0	8719	855	30	3	2633	3	LATS2	13	21563266	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1317198	21563266	93606612	1174	38222											
USPL1	10208	broad.mit.edu	37	chr13	31233061	31233061	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatatccaattgatattgcCagtgagtctgcatgcaccac	7	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31233061	T	T	31233061	2	4	21	1	0	0	0	0	0	0	0	1	17219	581	21	4		4	USPL1	13	31233061	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	9669795	31233061	83936817	1175	38223											
HSPH1	10808	broad.mit.edu	37	chr13	31714297	31714297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatatgagactatctgaaCaaaaacagagctctaagaca	6	8	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31714297	A	A	31714297	1	1	21	0	1	0	0	0	0	0	0	0	7501	493	17	3		3	HSPH1	13	31714297	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	481236	31714297	83455581	1176	38224											
STARD13	90627	broad.mit.edu	37	chr13	33703295	33703295	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttgcagttcaggcaagaCatctttggaccagtcatcga	10	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33703295	G	G	33703295	3	3	21	1	0	0	0	0	1	0	0	0	15374	478	17	4	1862	4	STARD13	13	33703295	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1988998	33703295	81466583	1177	38225											
NBEA	26960	broad.mit.edu	37	chr13	36202313	36202313	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagaagcagttcgtgctctGaatgtttttcactacttgac	8	10	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36202313	T	T	36202313	2	4	21	1	0	0	0	0	0	0	0	1	10281	1277	45	3		3	NBEA	13	36202313	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2499018	36202313	78967565	1178	38226											
POSTN	10631	broad.mit.edu	37	chr13	38138549	38138549	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctagcttttctctctgatCgataacaagtttcaataaaa	6	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38138549	A	A	38138549	1	1	21	0	1	0	0	0	0	0	0	0	12354	899	31	3		3	POSTN	13	38138549	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1936236	38138549	77031329	1179	38227											
POSTN	10631	broad.mit.edu	37	chr13	38151900	38151900	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatacttactatagacagtCacggggatttctttgaaggt	9	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38151900	A	A	38151900	2	1	21	1	0	0	0	0	0	0	0	1	12354	813	29	3		3	POSTN	13	38151900	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	13351	38151900	77017978	1180	38228											
DACH1	1602	broad.mit.edu	37	chr13	72049701	72049702	+	Intron	DNP	CC	AA	AA													ttttccccaacacgttcttcCcaccctgctttcagcttcaa							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72049702	AA	AA	72049701	1	1	21	0	1	0	0	0	0	0	0	0	4253	638	22	2		2	DACH1	13	72049701	Intron	DNP	CC	TCGA-05-4424-01A-22D-1855-08	33897801	72049701	43120177	1181	38229											
EDNRB	1910	broad.mit.edu	37	chr13	78474043	78474043	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatacagagcaattgggTtaatgcaggaattcagtgaa	10	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78474043	A	A	78474043	3	1	21	1	0	0	0	0	1	0	0	0	4960	1725	60	5	312	5	EDNRB	13	78474043	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	6424342	78474043	36695835	1182	38230											
SLITRK6	84189	broad.mit.edu	37	chr13	86369524	86369524	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcattaaactgtgaataaTatttcccgctagaatgagct	6	8	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86369524	A	A	86369524	3	1	21	1	0	0	0	0	1	0	0	0	14861	1406	49	5	1409	5	SLITRK6	13	86369524	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	7895481	86369524	28800354	1183	38231											
DCT	1638	broad.mit.edu	37	chr13	95117945	95117945	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgactaatcagagtcggatCgtctggtctcgctgccccaa	10	14	3	1	rs142171852	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95117945	G	G	95117945	3	3	21	1	0	0	0	0	1	0	0	0	4337	884	31	4	881	4	DCT	13	95117945	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	8748421	95117945	20051933	1184	38232											
NALCN	259232	broad.mit.edu	37	chr13	101726892	101726892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctccccatatttcacaGtaccaaataaaacaactcca	1	13	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101726892	T	T	101726892	3	4	21	1	0	0	0	0	1	0	0	0	10242	1029	36	3	1176	3	NALCN	13	101726892	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6608947	101726892	13442986	1185	38233											
NALCN	259232	broad.mit.edu	37	chr13	101756713	101756713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttggagtgaaaaataagCcatctgccataatcttcaga	8	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101756713	A	A	101756713	3	1	21	1	0	0	0	0	1	0	0	0	10242	739	26	3	2474	3	NALCN	13	101756713	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	29821	101756713	13413165	1186	38234											
NALCN	259232	broad.mit.edu	37	chr13	102030993	102030993	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagcgatctttcacataGgaactatccccctaaaaata	4	13	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102030993	T	T	102030993	2	4	21	1	0	0	0	0	0	0	0	1	10242	987	35	2		2	NALCN	13	102030993	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	274280	102030993	13138885	1187	38235											
SLC10A2	6555	broad.mit.edu	37	chr13	103698485	103698485	+	Nonstop_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttgtccacttgatgtctActtttcgtcaggttgaaatc	8	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103698485	C	C	103698485	4	2	21	1	0	0	0	0	0	0	0	0	14487	404	14	5	5	5	SLC10A2	13	103698485	Nonstop_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	1667492	103698485	11471393	1188	38236											
EFNB2	1948	broad.mit.edu	37	chr13	107164970	107164970	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgaatttgatatcttggtCtggtttggcacagttgagga	14	4	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107164970	A	A	107164970	3	1	21	1	0	0	0	0	1	0	0	0	4996	913	32	3	704	3	EFNB2	13	107164970	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3466485	107164970	8004908	1189	38237											
C13orf28	122258	broad.mit.edu	37	chr13	113086810	113086810	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatccattctggaccaaatCcttcaaaatattggaagatc	5	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113086810	A	A	113086810	2	1	21	1	0	0	0	0	0	0	0	1	1737	845	30	3		3	C13orf28	13	113086810	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	5921840	113086810	2083068	1190	38238											
ATP11A	23250	broad.mit.edu	37	chr13	113530300	113530300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtgcctcagggccctgGccttaggattgggagatgac	18	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113530300	T	T	113530300	1	4	21	0	1	0	0	0	0	0	0	0	1123	1218	42	3		3	ATP11A	13	113530300	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	443490	113530300	1639578	1191	38239											
F10	2159	broad.mit.edu	37	chr13	113797983	113797983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaacgctcggacagctgcGctcacctgcagatccgaccc	10	18	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113797983	T	T	113797983	1	4	21	0	1	0	0	0	0	0	0	0	5379	1102	38	3		3	F10	13	113797983	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	267683	113797983	1371895	1192	38240											
POTEG	404785	broad.mit.edu	37	chr14	19553761	19553761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagggggagcggcaagagCaaagtgggcccttggggaga	20	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19553761	A	A	19553761	3	1	21	1	0	0	0	0	1	0	0	0	12362	709	25	3	347	3	POTEG	14	19553761	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08		19553761	87795779	1193	38241											
OR4Q3	441669	broad.mit.edu	37	chr14	20216317	20216317	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctctacctgtgcttctcAcctgacagtggtcagcctga	8	14	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20216317	T	T	20216317	3	4	21	1	0	0	0	0	1	0	0	0	11175	159	6	5	733	5	OR4Q3	14	20216317	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	662556	20216317	87133223	1194	38242											
OR4K15	81127	broad.mit.edu	37	chr14	20444601	20444601	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacgcttattttaaacccTgtaatctacacgctaagaaa	4	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20444601	C	C	20444601	2	2	21	1	0	0	0	0	0	0	0	1	11164	1567	55	5		5	OR4K15	14	20444601	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	228284	20444601	86904939	1195	38243											
OR4K13	390433	broad.mit.edu	37	chr14	20502628	20502628	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagaacatctgggaataaCatccccaccatgagatggtc	8	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20502628	G	G	20502628	3	3	21	1	0	0	0	0	1	0	0	0	11162	478	17	4	626	4	OR4K13	14	20502628	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	58027	20502628	86846912	1196	38244											
RNASE10	338879	broad.mit.edu	37	chr14	20979141	20979141	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgtcacaaaagctccCgaccttttgatttgacattg	7	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20979141	A	A	20979141	2	1	21	1	0	0	0	0	0	0	0	1	13511	644	23	1		1	RNASE10	14	20979141	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	476513	20979141	86370399	1197	38245											
RNASE2	6036	broad.mit.edu	37	chr14	21424061	21424061	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttgaaacccagcacatcaAtatgacctcccagcaatgca	6	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21424061	T	T	21424061	3	4	21	1	0	0	0	0	1	0	0	0	13515	101	4	5	133	5	RNASE2	14	21424061	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	444920	21424061	85925479	1198	38246											
SALL2	6297	broad.mit.edu	37	chr14	21992261	21992261	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgccactccactgatggctGagccctcactccctgggggg	12	16	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21992261	A	A	21992261	3	1	21	1	0	0	0	0	1	0	0	0	13922	1294	45	4	1426	4	SALL2	14	21992261	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	568200	21992261	85357279	1199	38247											
MYH7	4625	broad.mit.edu	37	chr14	23885631	23885631	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttcaagagtggtgtaagtGgttcaaagaagcagaaggtg	14	4	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23885631	A	A	23885631	1	1	21	0	1	0	0	0	0	0	0	0	10133	1363	47	4		4	MYH7	14	23885631	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1893370	23885631	83463909	1200	38248											
MYH7	4625	broad.mit.edu	37	chr14	23902894	23902894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctccttctctgacttgcgCaggtagggggcggcagcccc	14	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23902894	A	A	23902894	2	1	21	1	0	0	0	0	0	0	0	1	10133	697	25	3		3	MYH7	14	23902894	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	17263	23902894	83446646	1201	38249											
TINF2	26277	broad.mit.edu	37	chr14	24709282	24709282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactcacctttccttccccCtggccattttcttcctcatc	2	20	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24709282	A	A	24709282	3	1	21	1	0	0	0	0	1	0	0	0	16046	680	24	2	154	2	TINF2	14	24709282	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	806388	24709282	82640258	1202	38250											
MIA2	117153	broad.mit.edu	37	chr14	39716921	39716921	+	Frame_Shift_Del	DEL	T	-	-													ccaagttggtttgattttggTtttgctatactaggctttgc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39716921	-	-	39716921	7	5	21	1	0	1	0	1	0	0	0	0	9657	1712	60	0	1157	0	MIA2	14	39716921	Frame_Shift_Del	DEL	T	TCGA-05-4424-01A-22D-1855-08	15007639	39716921	67632619	1203	38251											
CDKL1	8814	broad.mit.edu	37	chr14	50856906	50856906	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgtttttcttgttttctgGagggagacatgtcatagaca	10	6	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50856906	A	A	50856906	1	1	21	0	1	0	0	0	0	0	0	0	3183	1189	41	4		4	CDKL1	14	50856906	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	11139985	50856906	56492634	1204	38252											
PSMC6	5706	broad.mit.edu	37	chr14	53175554	53175554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatactttatatttgtaTagtgcctgatgattgacaaa	8	4	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53175554	C	C	53175554	1	2	21	0	1	0	0	0	0	0	0	0	12797	1421	49	5		5	PSMC6	14	53175554	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2318648	53175554	54173986	1205	38253											
MAPK1IP1L	93487	broad.mit.edu	37	chr14	55529931	55529931	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggggaccaccagcaccatAtcctgcccctacaggatcgt	9	16	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55529931	G	G	55529931	3	3	21	1	0	0	0	0	1	0	0	0	9370	449	16	5	620	5	MAPK1IP1L	14	55529931	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	2354377	55529931	51819609	1206	38254											
TBPL2	387332	broad.mit.edu	37	chr14	55906968	55906968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattatttcacttttcgaaGcttctaaccttcaacttaat	2	9	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55906968	T	T	55906968	1	4	21	0	1	0	0	0	0	0	0	0	15768	986	34	3		3	TBPL2	14	55906968	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	377037	55906968	51442572	1207	38255											
C14orf135	64430	broad.mit.edu	37	chr14	60592584	60592584	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttacatatactaaccttaaAgaatggatataagttataaa	4	5	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60592584	G	G	60592584	1	3	21	0	1	0	0	0	0	0	0	0	1758	87	3	5		5	C14orf135	14	60592584	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	4685616	60592584	46756956	1208	38256											
KCNH5	27133	broad.mit.edu	37	chr14	63269127	63269127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagggcatccacactttctCcagcatggtaaatgaggtcc	10	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63269127	A	A	63269127	3	1	21	1	0	0	0	0	1	0	0	0	8105	855	30	3	1270	3	KCNH5	14	63269127	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2676543	63269127	44080413	1209	38257											
WDR89	112840	broad.mit.edu	37	chr14	64066267	64066267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaactttttctgtaccagCacaaataatatgatcattac	3	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64066267	A	A	64066267	3	1	21	1	0	0	0	0	1	0	0	0	17463	710	25	3	773	3	WDR89	14	64066267	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	797140	64066267	43283273	1210	38258											
RAB15	376267	broad.mit.edu	37	chr14	65419249	65419249	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagatctgtatccgcactttGatgccgtctacctctatggt	8	12	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65419249	A	A	65419249	2	1	21	1	0	0	0	0	0	0	0	1	13009	1280	45	4		4	RAB15	14	65419249	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1352982	65419249	41930291	1211	38259											
PLEKHH1	57475	broad.mit.edu	37	chr14	68028670	68028670	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttttctttttgctcaGcttgagatggagaatcagca	8	7	4	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68028670	T	T	68028670	5	4	21	1	0	0	0	0	0	0	1	0	12171	985	34	3	441	3	PLEKHH1	14	68028670	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	2609421	68028670	39320870	1212	38260											
PCNX	22990	broad.mit.edu	37	chr14	71570410	71570410	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccaagggattgtattattCagtgctggtgtattcctgac	11	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71570410	T	T	71570410	1	4	21	0	1	0	0	0	0	0	0	0	11685	841	29	4		4	PCNX	14	71570410	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3541740	71570410	35779130	1213	38261											
SIPA1L1	26037	broad.mit.edu	37	chr14	72176331	72176331	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagccggctcgacccctctGacaagggagaacagcacctt	10	15	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72176331	T	T	72176331	2	4	21	1	0	0	0	0	0	0	0	1	14442	1277	45	3		3	SIPA1L1	14	72176331	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	605921	72176331	35173209	1214	38262											
RBM25	58517	broad.mit.edu	37	chr14	73554749	73554749	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggagccagaatctaccctCcgtgcactcagattattaca	7	12	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73554749	T	T	73554749	2	4	21	1	0	0	0	0	0	0	0	1	13233	842	30	4		4	RBM25	14	73554749	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1378418	73554749	33794791	1215	38263											
NUMB	8650	broad.mit.edu	37	chr14	73754027	73754027	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcaacctttcaccctgtAagagcagattttaaaagctt	7	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73754027	G	G	73754027	1	3	21	0	1	0	0	0	0	0	0	0	10846	377	13	5		5	NUMB	14	73754027	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	199278	73754027	33595513	1216	38264											
NRXN3	9369	broad.mit.edu	37	chr14	79117753	79117753	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctaaatcaatgactggatCtgtcctcaaatctatgagat	7	8	5	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79117753	A	A	79117753	1	1	21	0	1	0	0	0	0	0	0	0	10762	928	32	3		3	NRXN3	14	79117753	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	5363726	79117753	28231787	1217	38265											
C14orf145	145508	broad.mit.edu	37	chr14	81251424	81251424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattgtagctgtttcttcatCcctggattttgcctgtgcag	10	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81251424	A	A	81251424	3	1	21	1	0	0	0	0	1	0	0	0	1762	855	30	3	1302	3	C14orf145	14	81251424	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2133671	81251424	26098116	1218	38266											
TSHR	7253	broad.mit.edu	37	chr14	81609827	81609827	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatcgcctctgtagacctCtacactcactctgagtacta	5	15	5	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81609827	A	A	81609827	2	1	21	1	0	0	0	0	0	0	0	1	16747	900	32	3		3	TSHR	14	81609827	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	358403	81609827	25739713	1219	38267											
GTF2A1	2957	broad.mit.edu	37	chr14	81670426	81670426	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccatctactgccctggacTgcattagtttgttttcccat	6	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81670426	A	A	81670426	3	1	21	1	0	0	0	0	1	0	0	0	6917	1580	55	5	1003	5	GTF2A1	14	81670426	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	60599	81670426	25679114	1220	38268											
KCNK10	54207	broad.mit.edu	37	chr14	88658479	88658479	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catcttcatttgcttctcccGcaacatcttttatcgattgc	4	13	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88658479	C	C	88658479	1	2	21	0	1	0	0	0	0	0	0	0	8129	1102	38	4		4	KCNK10	14	88658479	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	6988053	88658479	18691061	1221	38269											
PTPN21	11099	broad.mit.edu	37	chr14	88940125	88940125	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaccaattttttttgcatCtactcgagtctttttcattc	5	9	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88940125	G	G	88940125	3	3	21	1	0	0	0	0	1	0	0	0	12894	913	32	4	1015	4	PTPN21	14	88940125	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	281646	88940125	18409415	1222	38270											
KCNK13	56659	broad.mit.edu	37	chr14	90651011	90651011	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaaaatggacagcggGtgctgcccgcaatgccagag	15	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90651011	C	C	90651011	2	2	21	1	0	0	0	0	0	0	0	1	8131	1248	44	4		4	KCNK13	14	90651011	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1710886	90651011	16698529	1223	38271											
C14orf102	55051	broad.mit.edu	37	chr14	90764712	90764712	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccactgtcccaaaagggttCaaagaattccacctgttcag	7	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90764712	A	A	90764712	4	1	21	1	0	0	0	0	0	1	0	0	1748	835	29	3	1964	3	C14orf102	14	90764712	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	113701	90764712	16584828	1224	38272											
TTC7B	145567	broad.mit.edu	37	chr14	91059911	91059911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctctgcagagacgaagCcacttccgacagtgcctgct	10	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91059911	A	A	91059911	3	1	21	1	0	0	0	0	1	0	0	0	16839	739	26	3	517	3	TTC7B	14	91059911	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	295199	91059911	16289629	1225	38273											
CCDC88C	440193	broad.mit.edu	37	chr14	91825947	91825947	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaacgccatgcctctggCtgggcaccacaggggagaag	14	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91825947	T	T	91825947	1	4	21	0	1	0	0	0	0	0	0	0	2893	812	28	4		4	CCDC88C	14	91825947	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	766036	91825947	15523593	1226	38274											
UBR7	55148	broad.mit.edu	37	chr14	93685569	93685569	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttatttcagacagtgtttaaGaatgaaagcctcaacgcaga	8	7	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93685569	T	T	93685569	3	4	21	1	0	0	0	0	1	0	0	0	17032	933	33	3	852	3	UBR7	14	93685569	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1859622	93685569	13663971	1227	38275											
PPP4R4	57718	broad.mit.edu	37	chr14	94640768	94640768	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtccggcatcccggggccGctccggcccgggcggcgaga	18	17	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94640768	T	T	94640768	1	4	21	0	1	0	0	0	0	0	0	0	12506	1102	38	3		3	PPP4R4	14	94640768	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	955199	94640768	12708772	1228	38276											
SERPINA6	866	broad.mit.edu	37	chr14	94780726	94780726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccctggagaagctggGcccgtgtgtggccacaggtg	17	12	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94780726	T	T	94780726	3	4	21	1	0	0	0	0	1	0	0	0	14206	1203	42	3	973	3	SERPINA6	14	94780726	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	139958	94780726	12568814	1229	38277											
WDR25	79446	broad.mit.edu	37	chr14	100950240	100950240	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggggagctgtgtttgctaTgagccccataccagatggca	13	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100950240	C	C	100950240	1	2	21	0	1	0	0	0	0	0	0	0	17409	1479	51	5		5	WDR25	14	100950240	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	6169514	100950240	6399300	1230	38278											
DYNC1H1	1778	broad.mit.edu	37	chr14	102472507	102472507	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctggggggttccccatttGgtaagttcttccacagatct	12	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102472507	C	C	102472507	3	2	21	1	0	0	0	0	1	0	0	0	4881	1362	47	4	5822	4	DYNC1H1	14	102472507	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1522267	102472507	4877033	1231	38279											
PPP1R13B	23368	broad.mit.edu	37	chr14	104220583	104220583	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatgtaaacgctgttccTaacaaaagaaagaaaaatgt	7	5	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104220583	A	A	104220583	5	1	21	1	0	0	0	0	0	0	1	0	12458	1536	53	5	2865	5	PPP1R13B	14	104220583	Splice_Site	SNP	T	TCGA-05-4424-01A-22D-1855-08	1748076	104220583	3128957	1232	38280											
TDRD9	122402	broad.mit.edu	37	chr14	104491050	104491050	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taattgagcttttccttcttCttaatctaaaatcatcatgt	3	8	5	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104491050	G	G	104491050	1	3	21	0	1	0	0	0	0	0	0	0	15858	928	32	4		4	TDRD9	14	104491050	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	270467	104491050	2858490	1233	38281											
BRF1	2972	broad.mit.edu	37	chr14	105695289	105695289	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcgtcaaccacggctgGgaaccagggcaacatctgtg	13	13	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105695289	A	A	105695289	1	1	21	0	1	0	0	0	0	0	0	0	1519	1247	43	4		4	BRF1	14	105695289	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1204239	105695289	1654251	1234	38282											
GABRG3	2567	broad.mit.edu	37	chr15	27777961	27777961	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctggactcgtactcccgGgtctttttccccacgtcctt	9	15	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27777961	T	T	27777961	2	4	21	1	0	0	0	0	0	0	0	1	6233	1219	43	2		2	GABRG3	15	27777961	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08		27777961	74753431	1235	38283											
RYR3	6263	broad.mit.edu	37	chr15	33941532	33941532	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acacccaaagaaggaaacatCttggcctctcttaaaaggag	8	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33941532	G	G	33941532	1	3	21	0	1	0	0	0	0	0	0	0	13881	928	32	4		4	RYR3	15	33941532	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6163571	33941532	68589860	1236	38284											
RYR3	6263	broad.mit.edu	37	chr15	34146975	34146975	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccattcccagtcctttctCtaccttgcctggtatacaac	4	15	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34146975	A	A	34146975	2	1	21	1	0	0	0	0	0	0	0	1	13881	900	32	3		3	RYR3	15	34146975	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	205443	34146975	68384417	1237	38285											
C15orf41	84529	broad.mit.edu	37	chr15	36910351	36910351	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatggcattaattcaccagGatcttataaaagacatgcta	7	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36910351	T	T	36910351	1	4	21	0	1	0	0	0	0	0	0	0	1808	1189	41	3		3	C15orf41	15	36910351	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2763376	36910351	65621041	1238	38286											
C15orf41	84529	broad.mit.edu	37	chr15	36983294	36983294	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattttccttatttaagattCtctcaattcagtcagtttta	3	7	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36983294	G	G	36983294	1	3	21	0	1	0	0	0	0	0	0	0	1808	928	32	4		4	C15orf41	15	36983294	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	72943	36983294	65548098	1239	38287											
C15orf23	90417	broad.mit.edu	37	chr15	40678797	40678797	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaacacaagtctcctgaacAactggccttcaatcagtggc	7	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40678797	T	T	40678797	1	4	21	0	1	0	0	0	0	0	0	0	1798	145	5	5		5	C15orf23	15	40678797	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	3695503	40678797	61852595	1240	38288											
CHP	11261	broad.mit.edu	37	chr15	41562881	41562881	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttattagtgtgggcaggaaCtattctttcctttagtaagc	9	7	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41562881	G	G	41562881	1	3	21	0	1	0	0	0	0	0	0	0	3397	580	20	4		4	CHP	15	41562881	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	884084	41562881	60968511	1241	38289											
TYRO3	7301	broad.mit.edu	37	chr15	41870231	41870231	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatcaacatcgagagagcTgaggagcccactgcgggagg	14	10	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41870231	C	C	41870231	2	2	21	1	0	0	0	0	0	0	0	1	16940	1567	55	5		5	TYRO3	15	41870231	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	307350	41870231	60661161	1242	38290											
LCMT2	9836	broad.mit.edu	37	chr15	43621794	43621794	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgcacttcagatgccaCtcctcaaattcgtcaaaggg	10	12	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43621794	G	G	43621794	3	3	21	1	0	0	0	0	1	0	0	0	8751	564	20	4	1170	4	LCMT2	15	43621794	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1751563	43621794	58909598	1243	38291											
DUOXA1	90527	broad.mit.edu	37	chr15	45412680	45412680	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcaccatggggactggtgCcaggccaccccacctgagat	12	15	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45412680	G	G	45412680	1	3	21	0	1	0	0	0	0	0	0	0	4842	754	26	4		4	DUOXA1	15	45412680	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1790886	45412680	57118712	1244	38292											
FBN1	2200	broad.mit.edu	37	chr15	48756162	48756162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacaggtgtagttgccaaCggtgttgtaacatgtccctg	12	8	0	0	rs140626		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48756162	A	A	48756162	3	1	21	1	0	0	0	0	1	0	0	0	5759	536	19	3	3720	3	FBN1	15	48756162	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3343482	48756162	53775230	1245	38293											
USP8	9101	broad.mit.edu	37	chr15	50791203	50791203	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcatgaagtttctgatatctCcgtttcttctgtgaaatctt	6	8	6	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50791203	G	G	50791203	3	3	21	1	0	0	0	0	1	0	0	0	17216	855	30	4	3349	4	USP8	15	50791203	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2035041	50791203	51740189	1246	38294											
CYP19A1	1588	broad.mit.edu	37	chr15	51504815	51504815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagtttccatctgtgattgGtattaaagcttctatttttt	6	5	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51504815	A	A	51504815	1	1	21	0	1	0	0	0	0	0	0	0	4181	1276	44	4		4	CYP19A1	15	51504815	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	713612	51504815	51026577	1247	38295											
WDR72	256764	broad.mit.edu	37	chr15	53908074	53908074	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatggcttaggctgcatttTtttggagatcttcattttct	9	6	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53908074	C	C	53908074	3	2	21	1	0	0	0	0	1	0	0	0	17449	1850	64	5	1003	5	WDR72	15	53908074	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	2403259	53908074	48623318	1248	38296											
UNC13C	440279	broad.mit.edu	37	chr15	54786898	54786899	+	Missense_Mutation	DNP	CC	AA	AA													atgaatatgtgcgtgaacttCctgccttcaaggatgctgtt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	54786899	AA	AA	54786898	3	1	21	1	0	0	0	0	1	0	0	0	17112	855	30	3	5096	3	UNC13C	15	54786898	Missense_Mutation	DNP	CC	TCGA-05-4424-01A-22D-1855-08	878824	54786898	47744494	1249	38297											
IGDCC4	57722	broad.mit.edu	37	chr15	65682635	65682635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtttgattccgcatggaCgtgggctggaggcaggggtg	19	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65682635	T	T	65682635	3	4	21	1	0	0	0	0	1	0	0	0	7639	536	19	4	1518	4	IGDCC4	15	65682635	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	10895737	65682635	36848757	1250	38298											
CORO2B	10391	broad.mit.edu	37	chr15	69011757	69011757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgccttctttagatcccGtgctgatgtctttgaaagaa	8	10	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69011757	T	T	69011757	3	4	21	1	0	0	0	0	1	0	0	0	3789	1145	40	3	1219	3	CORO2B	15	69011757	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3329122	69011757	33519635	1251	38299											
NOX5	79400	broad.mit.edu	37	chr15	69320705	69320705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggtgtatgacatcgatGgtaagggctcttcctgggtg	14	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69320705	T	T	69320705	3	4	21	1	0	0	0	0	1	0	0	0	10654	1362	47	2	368	2	NOX5	15	69320705	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	308948	69320705	33210687	1252	38300											
NOX5	79400	broad.mit.edu	37	chr15	69339750	69339750	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgatgccctcttgtgcaCagtgctacatcgatgggcct	10	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69339750	T	T	69339750	1	4	21	0	1	0	0	0	0	0	0	0	10654	493	17	4		4	NOX5	15	69339750	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	19045	69339750	33191642	1253	38301											
MYO9A	4649	broad.mit.edu	37	chr15	72191281	72191281	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccatcctgaagggtctgaaCcctgaatttccagagatcca	8	13	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72191281	G	G	72191281	3	3	21	1	0	0	0	0	1	0	0	0	10178	507	18	4	4155	4	MYO9A	15	72191281	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2851531	72191281	30340111	1254	38302											
MYO9A	4649	broad.mit.edu	37	chr15	72191292	72191292	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctgaaccctgaatttcCagagatccatatcccttaat	7	11	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72191292	A	A	72191292	2	1	21	1	0	0	0	0	0	0	0	1	10178	581	21	2		2	MYO9A	15	72191292	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	11	72191292	30340100	1255	38303											
PARP6	56965	broad.mit.edu	37	chr15	72533888	72533888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggcatcgcccacctgacCatcctcatatctgccaaaga	7	15	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72533888	A	A	72533888	3	1	21	1	0	0	0	0	1	0	0	0	11558	594	21	2	95	2	PARP6	15	72533888	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	342596	72533888	29997504	1256	38304											
TBC1D21	161514	broad.mit.edu	37	chr15	74180809	74180809	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaccttgatgctgatgagctGatctctgccgcctgcgtggt	13	11	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74180809	T	T	74180809	2	4	21	1	0	0	0	0	0	0	0	1	15729	1277	45	3		3	TBC1D21	15	74180809	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1646921	74180809	28350583	1257	38305											
RASGRF1	5923	broad.mit.edu	37	chr15	79312551	79312551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaacaaggagcatccatGtatacacacagatgtatgga	8	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79312551	T	T	79312551	1	4	21	0	1	0	0	0	0	0	0	0	13180	1392	48	3		3	RASGRF1	15	79312551	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5131742	79312551	23218841	1258	38306											
AP3B2	8120	broad.mit.edu	37	chr15	83328316	83328316	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacagcatttggaagtcacTgggtcagagcctgtatcaca	10	10	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83328316	A	A	83328316	3	1	21	1	0	0	0	0	1	0	0	0	747	1580	55	5	7	5	AP3B2	15	83328316	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	4015765	83328316	19203076	1259	38307											
ZSCAN2	54993	broad.mit.edu	37	chr15	85165222	85165222	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaggcttcagcaacagctCtaactttatcacacatcaga	5	12	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85165222	A	A	85165222	3	1	21	1	0	0	0	0	1	0	0	0	18360	913	32	3	1892	3	ZSCAN2	15	85165222	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1836906	85165222	17366170	1260	38308											
NTRK3	4916	broad.mit.edu	37	chr15	88679282	88679282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagattggtctgaaaacccCaataaaaagataacaatcag	6	8	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88679282	A	A	88679282	1	1	21	0	1	0	0	0	0	0	0	0	10803	609	21	2		2	NTRK3	15	88679282	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3514060	88679282	13852110	1261	38309											
C15orf32	145858	broad.mit.edu	37	chr15	93016280	93016280	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaggcaccagaagaggcatCttatgagagtcagccaggac	13	9	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93016280	T	T	93016280	3	4	21	1	0	0	0	0	1	0	0	0	1803	913	32	4	478	4	C15orf32	15	93016280	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4336998	93016280	9515112	1262	38310											
SOLH	6650	broad.mit.edu	37	chr16	601110	601110	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggtcggtgagggtccccGgtcggtgagggcccctgttg	18	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	601110	T	T	601110	1	4	21	0	1	0	0	0	0	0	0	0	15039	1131	39	1		1	SOLH	16	601110	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08		601110	89753643	1263	38311											
EME2	197342	broad.mit.edu	37	chr16	1826213	1826213	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctgaccacagccaaccctGatctcctgctggacctgggc	9	17	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1826213	C	C	1826213	3	2	21	1	0	0	0	0	1	0	0	0	5131	1290	45	4	1339	4	EME2	16	1826213	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1225103	1826213	88528540	1264	38312											
TSC2	7249	broad.mit.edu	37	chr16	2110757	2110757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtataggaaggagctccaGgtggtggcgtgggacattct	16	6	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2110757	T	T	2110757	3	4	21	1	0	0	0	0	1	0	0	0	16731	991	35	2	1100	2	TSC2	16	2110757	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	284544	2110757	88243996	1265	38313											
RNPS1	10921	broad.mit.edu	37	chr16	2312759	2312759	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctttgtcacattccgggtGagtctcccaatgtgcacttt	8	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2312759	A	A	2312759	2	1	21	1	0	0	0	0	0	0	0	1	13622	1277	45	4		4	RNPS1	16	2312759	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	202002	2312759	88041994	1266	38314											
NTN3	4917	broad.mit.edu	37	chr16	2522401	2522401	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagcacggcaggtgacccCagggacatggaggccgtcgt	15	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2522401	A	A	2522401	2	1	21	1	0	0	0	0	0	0	0	1	10796	581	21	2		2	NTN3	16	2522401	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	209642	2522401	87832352	1267	38315											
PRSS27	83886	broad.mit.edu	37	chr16	2766520	2766520	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgttgctgccttggccctCtgagaccctggaagtgagga	13	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2766520	T	T	2766520	2	4	21	1	0	0	0	0	0	0	0	1	12727	912	32	4		4	PRSS27	16	2766520	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	244119	2766520	87588233	1268	38316											
MMP25	64386	broad.mit.edu	37	chr16	3100498	3100498	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggggagcaccccatctcCggggacactcactttgacga	11	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3100498	T	T	3100498	2	4	21	1	0	0	0	0	0	0	0	1	9756	639	23	4		4	MMP25	16	3100498	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	333978	3100498	87254255	1269	38317											
ZNF597	146434	broad.mit.edu	37	chr16	3486959	3486959	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggagccacataaaacctCtaccacatatgctacatgta	6	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3486959	G	G	3486959	3	3	21	1	0	0	0	0	1	0	0	0	18154	913	32	4	538	4	ZNF597	16	3486959	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	386461	3486959	86867794	1270	38318											
TFAP4	7023	broad.mit.edu	37	chr16	4310163	4310163	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggaggggcccatggtgacGacattgatgtggtgggaggg	21	5	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4310163	A	A	4310163	2	1	21	1	0	0	0	0	0	0	0	1	15915	1045	37	4		4	TFAP4	16	4310163	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	823204	4310163	86044590	1271	38319											
PPL	5493	broad.mit.edu	37	chr16	4934045	4934045	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcctggcttccagccggctCacctcgacgtccagctcgcg	11	18	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4934045	T	T	4934045	2	4	21	1	0	0	0	0	0	0	0	1	12435	813	29	4		4	PPL	16	4934045	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	623882	4934045	85420708	1272	38320											
A2BP1	54715	broad.mit.edu	37	chr16	7383019	7383019	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagcatgctggcgtctcaagGagttctcctgcatccttatg	10	11	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7383019	C	C	7383019	1	2	21	0	1	0	0	0	0	0	0	0	3	1174	41	4		4	A2BP1	16	7383019	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2448974	7383019	82971734	1273	38321											
A2BP1	54715	broad.mit.edu	37	chr16	7721569	7721569	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccttatagagtagtgtatCaagagcctgtgtatggcaat	10	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7721569	A	A	7721569	1	1	21	0	1	0	0	0	0	0	0	0	3	827	29	3		3	A2BP1	16	7721569	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	338550	7721569	82633184	1274	38322											
USP7	7874	broad.mit.edu	37	chr16	8988720	8988720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatgctcgccctagaatGgcaaaggacatgtgctcaca	10	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8988720	T	T	8988720	1	4	21	0	1	0	0	0	0	0	0	0	17215	1363	47	2		2	USP7	16	8988720	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1267151	8988720	81366033	1275	38323											
CIITA	4261	broad.mit.edu	37	chr16	10988997	10988997	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgctctctccaccacgctGagcatataagaggtgctgaa	9	12	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10988997	T	T	10988997	1	4	21	0	1	0	0	0	0	0	0	0	3459	1305	45	3		3	CIITA	16	10988997	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2000277	10988997	79365756	1276	38324											
PARN	5073	broad.mit.edu	37	chr16	14540932	14540932	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcctactgtgctgggagcTgtaaaactgaaatgcaaaaa	9	7	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14540932	A	A	14540932	2	1	21	1	0	0	0	0	0	0	0	1	11547	1567	55	5		5	PARN	16	14540932	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	3551935	14540932	75813821	1277	38325											
NDE1	54820	broad.mit.edu	37	chr16	15785066	15785066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacccccatgcccagctcaGtggaagctgagaggacagac	13	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15785066	T	T	15785066	3	4	21	1	0	0	0	0	1	0	0	0	10338	1029	36	3	607	3	NDE1	16	15785066	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1244134	15785066	74569687	1278	38326											
XYLT1	64131	broad.mit.edu	37	chr16	17211722	17211722	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccacccaaatgacggtcaCggtcacattaggtcccttcc	7	15	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17211722	T	T	17211722	3	4	21	1	0	0	0	0	1	0	0	0	17590	536	19	4	549	4	XYLT1	16	17211722	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1426656	17211722	73143031	1279	38327											
XYLT1	64131	broad.mit.edu	37	chr16	17232156	17232156	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctggccttggatttctgcaGaggtttgttgggaaggcatc	14	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17232156	T	T	17232156	1	4	21	0	1	0	0	0	0	0	0	0	17590	957	33	3		3	XYLT1	16	17232156	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	20434	17232156	73122597	1280	38328											
XYLT1	64131	broad.mit.edu	37	chr16	17232324	17232324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgattccagttggtgatgCgcaggttgttgtccaccatg	13	9	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17232324	A	A	17232324	3	1	21	1	0	0	0	0	1	0	0	0	17590	768	27	3	1247	3	XYLT1	16	17232324	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	168	17232324	73122429	1281	38329											
XYLT1	64131	broad.mit.edu	37	chr16	17294420	17294420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgccgagaggcacggccGtggaccaccaggacaaaggc	14	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17294420	T	T	17294420	3	4	21	1	0	0	0	0	1	0	0	0	17590	1136	40	3	1910	3	XYLT1	16	17294420	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	62096	17294420	73060333	1282	38330											
GP2	2813	broad.mit.edu	37	chr16	20329602	20329602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttaaaccgggaggtgtcCccttgttccaagatggcacc	12	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20329602	A	A	20329602	2	1	21	1	0	0	0	0	0	0	0	1	6647	610	22	2		2	GP2	16	20329602	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	3035182	20329602	70025151	1283	38331											
GP2	2813	broad.mit.edu	37	chr16	20337584	20337584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcttccttacctgagcCaccttctctgcacttctatc	3	17	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20337584	A	A	20337584	1	1	21	0	1	0	0	0	0	0	0	0	6647	609	21	2		2	GP2	16	20337584	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	7982	20337584	70017169	1284	38332											
PDILT	204474	broad.mit.edu	37	chr16	20373850	20373850	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggttttgatattttctgCccaattcctccaacagtggg	9	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20373850	T	T	20373850	3	4	21	1	0	0	0	0	1	0	0	0	11768	739	26	4	474	4	PDILT	16	20373850	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	36266	20373850	69980903	1285	38333											
PDILT	204474	broad.mit.edu	37	chr16	20410372	20410372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtccccacacacaaggagGcaggcctcatcccatctatc	8	16	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20410372	T	T	20410372	1	4	21	0	1	0	0	0	0	0	0	0	11768	1218	42	3		3	PDILT	16	20410372	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	36522	20410372	69944381	1286	38334											
DNAH3	55567	broad.mit.edu	37	chr16	20946702	20946702	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaatgtggtcaatggggaTggtatatttccgggcataat	12	6	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20946702	C	C	20946702	3	2	21	1	0	0	0	0	1	0	0	0	4643	1464	51	5	392	5	DNAH3	16	20946702	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	536330	20946702	69408051	1287	38335											
ZP2	7783	broad.mit.edu	37	chr16	21209282	21209282	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggctatctcaggtaaggGtatgtgttaacaggcacaaa	11	6	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21209282	A	A	21209282	1	1	21	0	1	0	0	0	0	0	0	0	18345	1276	44	4		4	ZP2	16	21209282	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	262580	21209282	69145471	1288	38336											
PLK1	5347	broad.mit.edu	37	chr16	23690774	23690774	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggacttggagctgctAgagaagggtgctgggagcct	18	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23690774	G	G	23690774	1	3	21	0	1	0	0	0	0	0	0	0	12189	435	15	5		5	PLK1	16	23690774	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2481492	23690774	66663979	1289	38337											
PRKCB	5579	broad.mit.edu	37	chr16	23847586	23847586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccctccggcagaagaaCgtgcatgaggtcaagaacca	13	12	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847586	A	A	23847586	3	1	21	1	0	0	0	0	1	0	0	0	12614	535	19	3	92	3	PRKCB	16	23847586	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	156812	23847586	66507167	1290	38338											
C16orf82	162083	broad.mit.edu	37	chr16	27078357	27078357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccccccatttttctcgaggGagaaaaaggggaatcctctg	11	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27078357	T	T	27078357	3	4	21	1	0	0	0	0	1	0	0	0	1852	1174	41	3	43	3	C16orf82	16	27078357	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3230771	27078357	63276396	1291	38339											
CDIPT	10423	broad.mit.edu	37	chr16	29872528	29872528	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggttgaccaacaggcaCatggtggagcagcggtccgt	15	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29872528	T	T	29872528	3	4	21	1	0	0	0	0	1	0	0	0	3153	478	17	4	426	4	CDIPT	16	29872528	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2794171	29872528	60482225	1292	38340											
ITGAL	3683	broad.mit.edu	37	chr16	30486668	30486668	+	Frame_Shift_Del	DEL	G	-	-													ggaggggaacagcacaggaaGcctctatcagtgccagtcgg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30486668	-	-	30486668	7	5	21	1	0	1	0	1	0	0	0	0	7956	971	34	0	216	0	ITGAL	16	30486668	Frame_Shift_Del	DEL	G	TCGA-05-4424-01A-22D-1855-08	614140	30486668	59868085	1293	38341											
ITGAD	3681	broad.mit.edu	37	chr16	31427872	31427872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggagctcaacgtgattGtgactgtgtggaacgcaggt	14	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31427872	T	T	31427872	3	4	21	1	0	0	0	0	1	0	0	0	7954	1377	48	3	2482	3	ITGAD	16	31427872	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	941204	31427872	58926881	1294	38342											
ITGAD	3681	broad.mit.edu	37	chr16	31435413	31435413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacaggtttcccccaacCcctttgcagacattgcagaa	6	15	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31435413	A	A	31435413	1	1	21	0	1	0	0	0	0	0	0	0	7954	638	22	2		2	ITGAD	16	31435413	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	7541	31435413	58919340	1295	38343											
HEATR3	55027	broad.mit.edu	37	chr16	50118121	50118121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagaattccttcagtgaGtgcgggggacagctgttttc	14	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50118121	T	T	50118121	3	4	21	1	0	0	0	0	1	0	0	0	7096	1020	36	3	1243	3	HEATR3	16	50118121	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	18682708	50118121	40236632	1296	38344											
CYLD	1540	broad.mit.edu	37	chr16	50813643	50813643	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaccgttcttcaccaccactCcagcctcctcctgtgaactc	5	19	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50813643	G	G	50813643	2	3	21	1	0	0	0	0	0	0	0	1	4176	842	30	4		4	CYLD	16	50813643	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	695522	50813643	39541110	1297	38345											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53691404	53691404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgttgcataattagcatGtttcttgtcttttccagctc	7	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53691404	T	T	53691404	3	4	21	1	0	0	0	0	1	0	0	0	13661	1368	48	3	2465	3	RPGRIP1L	16	53691404	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2877761	53691404	36663349	1298	38346											
MT2A	4502	broad.mit.edu	37	chr16	56642595	56642595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactgctcctgcgccgccGgtaagaggctggggatgccc	14	15	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56642595	T	T	56642595	3	4	21	1	0	0	0	0	1	0	0	0	9999	1130	39	1	30	1	MT2A	16	56642595	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2951191	56642595	33712158	1299	38347											
MT1H	4496	broad.mit.edu	37	chr16	56703925	56703925	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattttgcgatctgagctgAagaggacttctttacttcct	8	8	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56703925	T	T	56703925	1	4	21	0	1	0	0	0	0	0	0	0	9996	261	9	5		5	MT1H	16	56703925	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	61330	56703925	33650828	1300	38348											
CDH8	1006	broad.mit.edu	37	chr16	61854915	61854915	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catctccatcgatgatatcaTatgatgactgtgcattttca	6	9	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61854915	A	A	61854915	3	1	21	1	0	0	0	0	1	0	0	0	3146	1406	49	5	1489	5	CDH8	16	61854915	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	5150990	61854915	28499838	1301	38349											
CDH11	1009	broad.mit.edu	37	chr16	64982074	64982074	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcttctgccagaggaactCtgattaccataaaccatgag	8	10	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64982074	A	A	64982074	1	1	21	0	1	0	0	0	0	0	0	0	3127	928	32	3		3	CDH11	16	64982074	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	3127159	64982074	25372679	1302	38350											
RLTPR	146206	broad.mit.edu	37	chr16	67690054	67690054	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggcacttgctctccttgggGaggaaggggagaggccaggt	18	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67690054	A	A	67690054	1	1	21	0	1	0	0	0	0	0	0	0	13505	1189	41	4		4	RLTPR	16	67690054	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2707980	67690054	22664699	1303	38351											
NRN1L	123904	broad.mit.edu	37	chr16	67919987	67919987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcgccaggccccccgtcCgaataacttgcacactctgt	8	17	1	0	rs114883420	byFrequency;by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67919987	A	A	67919987	3	1	21	1	0	0	0	0	1	0	0	0	10754	652	23	1	333	1	NRN1L	16	67919987	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	229933	67919987	22434766	1304	38352											
DUS2L	54920	broad.mit.edu	37	chr16	68109352	68109352	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagacttcagagcagacaGgggagccagctgaagatacc	12	11	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68109352	A	A	68109352	3	1	21	1	0	0	0	0	1	0	0	0	4846	1000	35	4	1073	4	DUS2L	16	68109352	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	189365	68109352	22245401	1305	38353											
VAC14	55697	broad.mit.edu	37	chr16	70796856	70796856	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcatcatcccaatggcCgtgtcactgaggtggcagtt	12	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70796856	A	A	70796856	2	1	21	1	0	0	0	0	0	0	0	1	17238	639	23	1		1	VAC14	16	70796856	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	2687504	70796856	19557897	1306	38354											
ZNF19	7567	broad.mit.edu	37	chr16	71512970	71512970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccgggccagagtgtgggGcagaggggacaggtagggac	21	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71512970	T	T	71512970	1	4	21	0	1	0	0	0	0	0	0	0	17881	1218	42	3		3	ZNF19	16	71512970	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	716114	71512970	18841783	1307	38355											
VAT1L	57687	broad.mit.edu	37	chr16	77896581	77896581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaatcctgctctacaccCagcaagactggctatgatct	8	12	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77896581	A	A	77896581	1	1	21	0	1	0	0	0	0	0	0	0	17257	609	21	2		2	VAT1L	16	77896581	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6383611	77896581	12458172	1308	38356											
CDH13	1012	broad.mit.edu	37	chr16	83781882	83781882	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgacaaagaccatcaagGgtatacttttctgctacaaa	6	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83781882	A	A	83781882	1	1	21	0	1	0	0	0	0	0	0	0	3129	1247	43	4		4	CDH13	16	83781882	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5885301	83781882	6572871	1309	38357											
NECAB2	54550	broad.mit.edu	37	chr16	84028176	84028176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgaagccctcgtcctgcCcaccactgaagtctgtgtgt	9	17	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84028176	T	T	84028176	1	4	21	0	1	0	0	0	0	0	0	0	10400	638	22	4		4	NECAB2	16	84028176	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	246294	84028176	6326577	1310	38358											
FOXC2	2303	broad.mit.edu	37	chr16	86601202	86601202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccatggccatccagaaCgcgcccgagaagaagatcac	9	14	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86601202	A	A	86601202	3	1	21	1	0	0	0	0	1	0	0	0	6053	535	19	3	263	3	FOXC2	16	86601202	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2573026	86601202	3753551	1311	38359											
DPEP1	1800	broad.mit.edu	37	chr16	89696899	89696899	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacgaggcagagaggatcatGagggactcccctgtcattga	14	9	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89696899	A	A	89696899	3	1	21	1	0	0	0	0	1	0	0	0	4753	1290	45	4	83	4	DPEP1	16	89696899	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	3095697	89696899	657854	1312	38360											
TCF25	22980	broad.mit.edu	37	chr16	89958629	89958629	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagacaacgtgtgtaccccAagtgcacatggctgaccacc	10	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89958629	T	T	89958629	4	4	21	1	0	0	0	0	0	1	0	0	15815	131	5	5	665	5	TCF25	16	89958629	Nonsense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	261730	89958629	396124	1313	38361											
TUBB3	10381	broad.mit.edu	37	chr16	90001147	90001147	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtacaggtcagagtggGgccggcaacaactgggccaa	14	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90001147	C	C	90001147	2	2	21	1	0	0	0	0	0	0	0	1	16883	1219	43	4		4	TUBB3	16	90001147	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	42518	90001147	353606	1314	38362											
SGSM2	9905	broad.mit.edu	37	chr17	2265147	2265147	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagctcttcccacttggcaAttgctacttcctaggacacc	6	15	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2265147	G	G	2265147	1	3	21	0	1	0	0	0	0	0	0	0	14336	116	4	5		5	SGSM2	17	2265147	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08		2265147	78930063	1315	38363											
SPATA22	84690	broad.mit.edu	37	chr17	3397854	3397854	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgcgtacattcgcccatttGatgctctcattagacactga	7	12	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3397854	C	C	3397854	1	2	21	0	1	0	0	0	0	0	0	0	15124	1305	45	4		4	SPATA22	17	3397854	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1132707	3397854	77797356	1316	38364											
SPNS3	201305	broad.mit.edu	37	chr17	4349344	4349344	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgcctgctcgcccagtAttcttggctcttcttcctgt	8	14	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4349344	T	T	4349344	3	4	21	1	0	0	0	0	1	0	0	0	15194	463	16	5	418	5	SPNS3	17	4349344	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	951490	4349344	76845866	1317	38365											
USP6	9098	broad.mit.edu	37	chr17	5044683	5044683	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtgggtgtaaattagacAgataagaaattaacacattc	8	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5044683	C	C	5044683	1	2	21	0	1	0	0	0	0	0	0	0	17213	203	7	5		5	USP6	17	5044683	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	695339	5044683	76150527	1318	38366											
USP6	9098	broad.mit.edu	37	chr17	5051907	5051907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctaactaccaatggggacCtacccaaaccaatattcatc	4	15	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5051907	A	A	5051907	3	1	21	1	0	0	0	0	1	0	0	0	17213	680	24	2	2570	2	USP6	17	5051907	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	7224	5051907	76143303	1319	38367											
KIAA0753	9851	broad.mit.edu	37	chr17	6513541	6513541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaaactatggtttaacCtctgactcactgaagctcca	6	11	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6513541	A	A	6513541	1	1	21	0	1	0	0	0	0	0	0	0	8261	696	24	2		2	KIAA0753	17	6513541	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1461634	6513541	74681669	1320	38368											
SLC13A5	284111	broad.mit.edu	37	chr17	6591060	6591060	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgtgattctgaaaaggattCtctgaatgtgccgggtacgt	12	7	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6591060	A	A	6591060	1	1	21	0	1	0	0	0	0	0	0	0	14508	928	32	3		3	SLC13A5	17	6591060	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	77519	6591060	74604150	1321	38369											
CLEC10A	10462	broad.mit.edu	37	chr17	6978507	6978507	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctccacccagcccgtgccCctgccagtcgtctggctggc	11	20	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6978507	G	G	6978507	3	3	21	1	0	0	0	0	1	0	0	0	3527	623	22	4	137	4	CLEC10A	17	6978507	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	387447	6978507	74216703	1322	38370											
CHRNB1	1140	broad.mit.edu	37	chr17	7358658	7358658	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaaggcccaaacccgagaGagacctgatgccggagcccc	11	14	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7358658	C	C	7358658	3	2	21	1	0	0	0	0	1	0	0	0	3421	942	33	4	1134	4	CHRNB1	17	7358658	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	380151	7358658	73836552	1323	38371											
POLR2A	5430	broad.mit.edu	37	chr17	7405145	7405146	+	Intron	INS	-	T	T													ggtcaggagaatcacgggagINSttgggggaaattttgggaac							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7405146	T	T	7405145	6	5	21	0	1	1	1	0	0	0	0	0	12309	1044	36	0		0	POLR2A	17	7405145	Intron	INS	-	TCGA-05-4424-01A-22D-1855-08	46487	7405145	73790065	1324	38372											
TP53	7157	broad.mit.edu	37	chr17	7578268	7578268	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttccttccactcggataAgatgctgaggaggggccaga	12	9	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578268	C	C	7578268	3	2	21	1	0	0	0	0	1	0	0	0	16505	72	3	5	713	5	TP53	17	7578268	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	173123	7578268	73616942	1325	38373											
CHD3	1107	broad.mit.edu	37	chr17	7798888	7798888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttttctttccctctccCccatgacctcatttcctgcc	3	19	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7798888	A	A	7798888	1	1	21	0	1	0	0	0	0	0	0	0	3357	638	22	2		2	CHD3	17	7798888	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	220620	7798888	73396322	1326	38374											
ARHGEF15	22899	broad.mit.edu	37	chr17	8222414	8222414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggaccccctaccttccGcctctcccttctcagcaacc	4	21	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8222414	T	T	8222414	3	4	21	1	0	0	0	0	1	0	0	0	900	1087	38	3	2169	3	ARHGEF15	17	8222414	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	423526	8222414	72972796	1327	38375											
PIK3R6	146850	broad.mit.edu	37	chr17	8731893	8731893	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggccccacctgagtctgTggtaggcctgggccaggcgc	17	14	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8731893	C	C	8731893	3	2	21	1	0	0	0	0	1	0	0	0	12018	1696	59	5	999	5	PIK3R6	17	8731893	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	509479	8731893	72463317	1328	38376											
WDR16	146845	broad.mit.edu	37	chr17	9501631	9501631	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaacaggacagttgaaaaGaatagtcatgagtattggag	11	5	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9501631	C	C	9501631	3	2	21	1	0	0	0	0	1	0	0	0	17403	942	33	4	635	4	WDR16	17	9501631	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	769738	9501631	71693579	1329	38377											
GLP2R	9340	broad.mit.edu	37	chr17	9739826	9739826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaccaattttccccaaCcaagtgcttttctgaagtcc	4	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9739826	A	A	9739826	1	1	21	0	1	0	0	0	0	0	0	0	6517	522	18	3		3	GLP2R	17	9739826	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	238195	9739826	71455384	1330	38378											
GAS7	8522	broad.mit.edu	37	chr17	9885008	9885008	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaggcccaacccctccCtgggtttgctacatcagcca	7	19	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9885008	G	G	9885008	1	3	21	0	1	0	0	0	0	0	0	0	6312	696	24	4		4	GAS7	17	9885008	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	145182	9885008	71310202	1331	38379											
MYH13	8735	broad.mit.edu	37	chr17	10254091	10254091	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttggcaaagaccttacctCttttttgtatagcatatgag	7	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10254091	G	G	10254091	1	3	21	0	1	0	0	0	0	0	0	0	10126	928	32	4		4	MYH13	17	10254091	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	369083	10254091	70941119	1332	38380											
MYH8	4626	broad.mit.edu	37	chr17	10299852	10299852	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggatatatggagtagggAggactgtgaggactcacgtt	16	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10299852	C	C	10299852	1	2	21	0	1	0	0	0	0	0	0	0	10135	319	11	5		5	MYH8	17	10299852	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	45761	10299852	70895358	1333	38381											
MYH4	4622	broad.mit.edu	37	chr17	10356686	10356686	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaatgtcaatgacaacgTattatcttgatgaaaaacat	6	7	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10356686	C	C	10356686	1	2	21	0	1	0	0	0	0	0	0	0	10131	1653	57	5		5	MYH4	17	10356686	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	56834	10356686	70838524	1334	38382											
MYH1	4619	broad.mit.edu	37	chr17	10419236	10419236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatgaaaaccagctgagcCactcaccagtcagcatgaac	7	13	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10419236	A	A	10419236	1	1	21	0	1	0	0	0	0	0	0	0	10123	609	21	2		2	MYH1	17	10419236	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	62550	10419236	70775974	1335	38383											
MYH2	4620	broad.mit.edu	37	chr17	10446927	10446927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggaaagaacaatgatGtaatagaatgggaatgaaaa	11	1	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10446927	T	T	10446927	1	4	21	0	1	0	0	0	0	0	0	0	10129	1392	48	3		3	MYH2	17	10446927	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	27691	10446927	70748283	1336	38384											
DNAH9	1770	broad.mit.edu	37	chr17	11659784	11659784	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catataaaggaaataattctCcataatcccaaccaaaccaa	2	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11659784	A	A	11659784	1	1	21	0	1	0	0	0	0	0	0	0	4648	870	30	3		3	DNAH9	17	11659784	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1212857	11659784	69535426	1337	38385											
DNAH9	1770	broad.mit.edu	37	chr17	11784760	11784760	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagggagaaaatgttctgcCactagagcctgcagtgtact	12	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11784760	T	T	11784760	1	4	21	0	1	0	0	0	0	0	0	0	4648	609	21	4		4	DNAH9	17	11784760	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	124976	11784760	69410450	1338	38386											
NCOR1	9611	broad.mit.edu	37	chr17	16004785	16004785	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggcaccctcacttcaacGtccacagagtcagctttggt	8	14	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16004785	A	A	16004785	2	1	21	1	0	0	0	0	0	0	0	1	10330	1136	40	4		4	NCOR1	17	16004785	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	4220025	16004785	65190425	1339	38387											
TNFRSF13B	23495	broad.mit.edu	37	chr17	16855818	16855818	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatggttttgcaggacatGcaggtacccagcagaggatc	12	9	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16855818	A	A	16855818	2	1	21	1	0	0	0	0	0	0	0	1	16410	1311	46	4		4	TNFRSF13B	17	16855818	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	851033	16855818	64339392	1340	38388											
PLD6	201164	broad.mit.edu	37	chr17	17106395	17106395	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgtagcctgggtcttgatCgtgccggacctggatccctg	13	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17106395	T	T	17106395	3	4	21	1	0	0	0	0	1	0	0	0	12145	884	31	4	317	4	PLD6	17	17106395	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	250577	17106395	64088815	1341	38389											
MAP2K3	5606	broad.mit.edu	37	chr17	21208480	21208481	+	Intron	DNP	GG	TT	TT													cctgcccttggtggtcaggtGgggtgggtggagccgtgcct							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21208481	TT	TT	21208480	1	4	21	0	1	0	0	0	0	0	0	0	9330	1363	47	2		2	MAP2K3	17	21208480	Intron	DNP	GG	TCGA-05-4424-01A-22D-1855-08	4102085	21208480	59986730	1342	38390											
KCNJ12	3768	broad.mit.edu	37	chr17	21318835	21318835	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acattgagttcgccaacatgGacgagaagtcacagcgctac	10	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21318835	A	A	21318835	3	1	21	1	0	0	0	0	1	0	0	0	8116	1174	41	4	183	4	KCNJ12	17	21318835	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	110355	21318835	59876375	1343	38391											
SEZ6	124925	broad.mit.edu	37	chr17	27308745	27308745	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaccgcagccatggctggaGtggggctggtaaagacaggg	18	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27308745	A	A	27308745	3	1	21	1	0	0	0	0	1	0	0	0	14255	1029	36	4	2693	4	SEZ6	17	27308745	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	5989910	27308745	53886465	1344	38392											
MYO18A	399687	broad.mit.edu	37	chr17	27493181	27493181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtccttggtgcctgcacCaggctcagcaaagtggacca	12	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27493181	A	A	27493181	3	1	21	1	0	0	0	0	1	0	0	0	10159	594	21	2	5550	2	MYO18A	17	27493181	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	184436	27493181	53702029	1345	38393											
CORO6	84940	broad.mit.edu	37	chr17	27945929	27945929	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacgtctgggtgcatatcaTccaggctcagcagcacctcc	10	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27945929	A	A	27945929	3	1	21	1	0	0	0	0	1	0	0	0	3790	1435	50	5	934	5	CORO6	17	27945929	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	452748	27945929	53249281	1346	38394											
NF1	4763	broad.mit.edu	37	chr17	29647378	29647378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaaaaaaaaaaaaaaaaGgcagattcttacctagctag	5	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29647378	T	T	29647378	1	4	21	0	1	0	0	0	0	0	0	0	10451	1015	35	2		2	NF1	17	29647378	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1701449	29647378	51547832	1347	38395											
NF1	4763	broad.mit.edu	37	chr17	29670033	29670033	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attatctttaatagagtccaGaggaagtatttatggcaatc	8	5	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29670033	T	T	29670033	4	4	21	1	0	0	0	0	0	1	0	0	10451	943	33	3	7320	3	NF1	17	29670033	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	22655	29670033	51525177	1348	38396											
ACCN1	40	broad.mit.edu	37	chr17	31416022	31416022	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttcctctgaaagaacaaaGatggacagagccacgggtca	11	9	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31416022	A	A	31416022	1	1	21	0	1	0	0	0	0	0	0	0	128	957	33	4		4	ACCN1	17	31416022	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1745989	31416022	49779188	1349	38397											
CCT6B	10693	broad.mit.edu	37	chr17	33288465	33288465	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttagtcgcgattctgagCaaaaacggcaatgcgacgcc	11	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33288465	G	G	33288465	1	3	21	0	1	0	0	0	0	0	0	0	2988	725	25	4		4	CCT6B	17	33288465	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	1872443	33288465	47906745	1350	38398											
UNC45B	146862	broad.mit.edu	37	chr17	33482221	33482221	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttctctactgcatgggaTagggtggggaggattatcac	14	6	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33482221	A	A	33482221	1	1	21	0	1	0	0	0	0	0	0	0	17115	1421	49	5		5	UNC45B	17	33482221	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	193756	33482221	47712989	1351	38399											
SLFN11	91607	broad.mit.edu	37	chr17	33687322	33687322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttcttggagtacactgGtctgctaaggggaggcccac	13	11	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33687322	T	T	33687322	3	4	21	1	0	0	0	0	1	0	0	0	14847	1261	44	3	1579	3	SLFN11	17	33687322	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	205101	33687322	47507888	1352	38400											
SLFN12L	342615	broad.mit.edu	37	chr17	33825659	33825659	+	Intron	DEL	C	-	-													cgtcattgagcagctacagaCcactcaaaccatccaggaca							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33825659	-	-	33825659	6	5	21	0	1	1	0	1	0	0	0	0	14849	522	18	0		0	SLFN12L	17	33825659	Intron	DEL	C	TCGA-05-4424-01A-22D-1855-08	138337	33825659	47369551	1353	38401											
GAS2L2	246176	broad.mit.edu	37	chr17	34077352	34077352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctctggagtggaggcgGggagaaaagggcagaggcag	20	7	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34077352	T	T	34077352	1	4	21	0	1	0	0	0	0	0	0	0	6309	1247	43	2		2	GAS2L2	17	34077352	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	251693	34077352	47117858	1354	38402											
GAS2L2	246176	broad.mit.edu	37	chr17	34079360	34079360	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcatgaaaaaagagctggTtcaaggcaaatctagaatga	11	5	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34079360	C	C	34079360	1	2	21	0	1	0	0	0	0	0	0	0	6309	1740	60	5		5	GAS2L2	17	34079360	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2008	34079360	47115850	1355	38403											
TAF15	8148	broad.mit.edu	37	chr17	34151074	34151074	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgtgtaatattttcttTtttgtagatgaccgtcgtga	9	4	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34151074	C	C	34151074	1	2	21	0	1	0	0	0	0	0	0	0	15637	1856	64	5		5	TAF15	17	34151074	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	71714	34151074	47044136	1356	38404											
CCL5	6352	broad.mit.edu	37	chr17	34207225	34207225	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtggtggtcaagaccAggacttacatggggaggcag	18	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34207225	T	T	34207225	1	4	21	0	1	0	0	0	0	0	0	0	2935	203	7	5		5	CCL5	17	34207225	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	56151	34207225	46987985	1357	38405											
GGNBP2	79893	broad.mit.edu	37	chr17	34935847	34935847	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgctttacgcaagagttttGaggtaagaacagtgggctgt	13	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34935847	C	C	34935847	3	2	21	1	0	0	0	0	1	0	0	0	6423	1291	45	4	1044	4	GGNBP2	17	34935847	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	728622	34935847	46259363	1358	38406											
MRM1	79922	broad.mit.edu	37	chr17	34964586	34964586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatggggaaattacatccCgttgatgagatgaggggctg	14	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34964586	A	A	34964586	1	1	21	0	1	0	0	0	0	0	0	0	9865	667	23	1		1	MRM1	17	34964586	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	28739	34964586	46230624	1359	38407											
ACACA	31	broad.mit.edu	37	chr17	35512711	35512711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacctgtatccctgtgaagCacaaatagtttttaactcat	5	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35512711	A	A	35512711	1	1	21	0	1	0	0	0	0	0	0	0	106	725	25	3		3	ACACA	17	35512711	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	548125	35512711	45682499	1360	38408											
DDX52	11056	broad.mit.edu	37	chr17	35980934	35980934	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttcttaataatggctTatcatcctcagtgaaaaatg	5	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35980934	A	A	35980934	4	1	21	1	0	0	0	0	0	1	0	0	4403	1763	61	5	254	5	DDX52	17	35980934	Nonsense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	468223	35980934	45214276	1361	38409											
STAC2	342667	broad.mit.edu	37	chr17	37371347	37371348	+	Intron	INS	-	C	C													agacacccctccccaaaagaINSccccccctttttgcccacca							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37371348	C	C	37371347	6	5	21	0	1	1	1	0	0	0	0	0	15358	290	10	0		0	STAC2	17	37371347	Intron	INS	-	TCGA-05-4424-01A-22D-1855-08	1390413	37371347	43823863	1362	38410											
MED1	5469	broad.mit.edu	37	chr17	37595433	37595433	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccttagctgctgtacaAgctccggacagctctgaaat	8	13	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37595433	G	G	37595433	3	3	21	1	0	0	0	0	1	0	0	0	9518	72	3	5	4380	5	MED1	17	37595433	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	224086	37595433	43599777	1363	38411											
KRT27	342574	broad.mit.edu	37	chr17	38933680	38933680	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtattatctatgcgtgatCtagatcatagatattttgta	8	4	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38933680	G	G	38933680	1	3	21	0	1	0	0	0	0	0	0	0	8535	928	32	4		4	KRT27	17	38933680	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1338247	38933680	42261530	1364	38412											
KRTAP9-9	81870	broad.mit.edu	37	chr17	39389067	39389067	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtactgcagaagaacctGctaccaccccacaagtgttt	8	12	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39389067	C	C	39389067	1	2	21	0	1	0	0	0	0	0	0	0	8649	1319	46	4		4	KRTAP9-9	17	39389067	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	455387	39389067	41806143	1365	38413											
KRT33A	3883	broad.mit.edu	37	chr17	39503334	39503334	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtggcgaaccattgctcCacttccctgcggttggtttc	11	13	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39503334	A	A	39503334	2	1	21	1	0	0	0	0	0	0	0	1	8540	581	21	2		2	KRT33A	17	39503334	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	114267	39503334	41691876	1366	38414											
KRT38	8687	broad.mit.edu	37	chr17	39596834	39596834	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggtagttggccaggcGgtcattcaggaactgcatgg	14	10	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39596834	C	C	39596834	3	2	21	1	0	0	0	0	1	0	0	0	8546	1116	39	4	1058	4	KRT38	17	39596834	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	93500	39596834	41598376	1367	38415											
KRT36	8689	broad.mit.edu	37	chr17	39642675	39642675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaggagatgactttccCatctctgatctcctcggtga	10	12	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39642675	A	A	39642675	3	1	21	1	0	0	0	0	1	0	0	0	8544	594	21	2	50	2	KRT36	17	39642675	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	45841	39642675	41552535	1368	38416											
STAT5A	6776	broad.mit.edu	37	chr17	40452733	40452733	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttggggctctcgtgcagGtgtgagaagttggccgagat	17	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40452733	A	A	40452733	4	1	21	1	0	0	0	0	0	1	0	0	15386	1275	44	4	860	4	STAT5A	17	40452733	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	810058	40452733	40742477	1369	38417											
AOC2	314	broad.mit.edu	37	chr17	40997147	40997147	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcaccgtcgcccggtgctGagagctgagtttacacagat	11	11	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40997147	A	A	40997147	2	1	21	1	0	0	0	0	0	0	0	1	729	1277	45	4		4	AOC2	17	40997147	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	544414	40997147	40198063	1370	38418											
BRCA1	672	broad.mit.edu	37	chr17	41243499	41243499	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgattattttcttccaagCccgttcctctttcttcatca	3	13	5	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41243499	G	G	41243499	3	3	21	1	0	0	0	0	1	0	0	0	1507	739	26	4	1668	4	BRCA1	17	41243499	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	246352	41243499	39951711	1371	38419											
SOST	50964	broad.mit.edu	37	chr17	41832830	41832830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgagctccgactggttGtggaagcgggtgaggcgctt	16	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41832830	T	T	41832830	3	4	21	1	0	0	0	0	1	0	0	0	15052	1368	48	3	123	3	SOST	17	41832830	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	589331	41832830	39362380	1372	38420											
TMUB2	79089	broad.mit.edu	37	chr17	42267771	42267771	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaaaaaaaaatccacccTccagtttttccccactcccc	4	16	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42267771	C	C	42267771	1	2	21	0	1	0	0	0	0	0	0	0	16388	1566	54	5		5	TMUB2	17	42267771	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	434941	42267771	38927439	1373	38421											
SLC4A1	6521	broad.mit.edu	37	chr17	42337925	42337925	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctgcaggcagtggaggaGtgagctggtaggctgggcca	18	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42337925	A	A	42337925	1	1	21	0	1	0	0	0	0	0	0	0	14764	1044	36	4		4	SLC4A1	17	42337925	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	70154	42337925	38857285	1374	38422											
ADAM11	4185	broad.mit.edu	37	chr17	42855137	42855137	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagcctgcgggcctaacaTgttgtgcctggaccatcgct	11	14	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42855137	C	C	42855137	3	2	21	1	0	0	0	0	1	0	0	0	235	1464	51	5	2066	5	ADAM11	17	42855137	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	517212	42855137	38340073	1375	38423											
ADAM11	4185	broad.mit.edu	37	chr17	42855212	42855212	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggcagtggggagcgccGgatttgctcccaccacgggg	16	15	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42855212	A	A	42855212	3	1	21	1	0	0	0	0	1	0	0	0	235	1116	39	4	2141	4	ADAM11	17	42855212	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	75	42855212	38339998	1376	38424											
KIF18B	146909	broad.mit.edu	37	chr17	43013481	43013481	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctgttgggtggccgcctCgccaaagacccggtcaaaga	13	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43013481	A	A	43013481	4	1	21	1	0	0	0	0	0	1	0	0	8351	893	31	3	2394	3	KIF18B	17	43013481	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	158269	43013481	38181729	1377	38425											
PLCD3	113026	broad.mit.edu	37	chr17	43196463	43196463	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacactccaggaaacctggCccctttgacccatctgtcat	7	15	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43196463	T	T	43196463	1	4	21	0	1	0	0	0	0	0	0	0	12127	754	26	4		4	PLCD3	17	43196463	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	182982	43196463	37998747	1378	38426											
HEXIM1	10614	broad.mit.edu	37	chr17	43227518	43227518	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggtggcgacgacgcgCgtgtgcgggagctggagctg	22	9	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43227518	T	T	43227518	3	4	21	1	0	0	0	0	1	0	0	0	7143	768	27	4	963	4	HEXIM1	17	43227518	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	31055	43227518	37967692	1379	38427											
NPEPPS	9520	broad.mit.edu	37	chr17	45691032	45691032	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacttattttttgtcccttgTaggtctatctgactgttttg	8	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45691032	A	A	45691032	1	1	21	0	1	0	0	0	0	0	0	0	10670	1653	57	5		5	NPEPPS	17	45691032	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2463514	45691032	35504178	1380	38428											
SCRN2	90507	broad.mit.edu	37	chr17	45915787	45915787	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggggcctgggccacccccAtcccgaagatgaaaggtttg	15	12	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45915787	G	G	45915787	3	3	21	1	0	0	0	0	1	0	0	0	14052	217	8	5	335	5	SCRN2	17	45915787	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	224755	45915787	35279423	1381	38429											
SKAP1	8631	broad.mit.edu	37	chr17	46247888	46247888	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattgagttcagtaattttTgtagtctcagagaaaggtgc	10	4	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46247888	C	C	46247888	1	2	21	0	1	0	0	0	0	0	0	0	14468	1827	63	5		5	SKAP1	17	46247888	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	332101	46247888	34947322	1382	38430											
HOXB9	3219	broad.mit.edu	37	chr17	46703206	46703206	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcacggcctccctgccCgccgaagtttccaaactgta	9	16	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46703206	A	A	46703206	2	1	21	1	0	0	0	0	0	0	0	1	7375	639	23	1		1	HOXB9	17	46703206	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	455318	46703206	34492004	1383	38431											
ABI3	51225	broad.mit.edu	37	chr17	47293928	47293928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcgctggaggagaccatGgccttcactacccaggcact	12	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47293928	T	T	47293928	3	4	21	1	0	0	0	0	1	0	0	0	90	1348	47	2	159	2	ABI3	17	47293928	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	590722	47293928	33901282	1384	38432											
FAM117A	81558	broad.mit.edu	37	chr17	47794983	47794983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacatggaaggagagctggCaaggttgccaggctccagga	17	8	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47794983	A	A	47794983	3	1	21	1	0	0	0	0	1	0	0	0	5455	710	25	3	571	3	FAM117A	17	47794983	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	501055	47794983	33400227	1385	38433											
KIF2B	84643	broad.mit.edu	37	chr17	51901063	51901063	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcgtgaggaagcggcctctCaaccagcgagagacaacctt	12	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51901063	G	G	51901063	2	3	21	1	0	0	0	0	0	0	0	1	8368	813	29	4		4	KIF2B	17	51901063	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	4106080	51901063	29294147	1386	38434											
TOM1L1	10040	broad.mit.edu	37	chr17	52990037	52990038	+	Frame_Shift_Del	DEL	TG	-	-													tctaatttagcttattgacaTgtgtgtgcagaactgtggtc							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52990038	-	-	52990037	7	5	21	1	0	1	0	1	0	0	0	0	16475	1464	51	0	247	0	TOM1L1	17	52990037	Frame_Shift_Del	DEL	TG	TCGA-05-4424-01A-22D-1855-08	1088974	52990037	28205173	1387	38435											
ANKFN1	162282	broad.mit.edu	37	chr17	54535094	54535094	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcaaaaagttgtttcgtGtgtgtctgaaaatggactgg	12	4	2	2	rs114210470	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54535094	T	T	54535094	1	4	21	0	1	0	0	0	0	0	0	0	625	1392	48	3		3	ANKFN1	17	54535094	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1545057	54535094	26660116	1388	38436											
MPO	4353	broad.mit.edu	37	chr17	56350859	56350859	+	Frame_Shift_Del	DEL	C	-	-													catgggctggtaccgattgtCcaggcggaacatgaagggtt							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56350859	-	-	56350859	7	5	21	1	0	1	0	1	0	0	0	0	9826	855	30	0	716	0	MPO	17	56350859	Frame_Shift_Del	DEL	C	TCGA-05-4424-01A-22D-1855-08	1815765	56350859	24844351	1389	38437											
HSF5	124535	broad.mit.edu	37	chr17	56540081	56540081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaactctccactagaataGtctttagcagaagtactagg	7	9	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56540081	T	T	56540081	1	4	21	0	1	0	0	0	0	0	0	0	7466	1044	36	3		3	HSF5	17	56540081	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	189222	56540081	24655129	1390	38438											
SEPT4	5414	broad.mit.edu	37	chr17	56602523	56602523	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccttctcttctatgtccActgcatgcttagtgatctcc	5	15	3	1	rs112657072		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56602523	G	G	56602523	3	3	21	1	0	0	0	0	1	0	0	0	14179	159	6	5	975	5	SEPT4	17	56602523	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	62442	56602523	24592687	1391	38439											
TEX14	56155	broad.mit.edu	37	chr17	56676440	56676440	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtttcatctcgacttcatCtaatatctgctcgatattcc	4	12	5	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56676440	G	G	56676440	3	3	21	1	0	0	0	0	1	0	0	0	15900	913	32	4	2289	4	TEX14	17	56676440	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	73917	56676440	24518770	1392	38440											
APPBP2	10513	broad.mit.edu	37	chr17	58539393	58539393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttaattaactgttctgcCttcttaaattcacgttttac	4	8	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58539393	A	A	58539393	3	1	21	1	0	0	0	0	1	0	0	0	818	680	24	2	993	2	APPBP2	17	58539393	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1862953	58539393	22655817	1393	38441											
TBX4	9496	broad.mit.edu	37	chr17	59556126	59556126	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcatctctgtgacctccTaccagaatcacaaggtacag	6	14	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59556126	G	G	59556126	3	3	21	1	0	0	0	0	1	0	0	0	15782	1522	53	5	706	5	TBX4	17	59556126	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	1016733	59556126	21639084	1394	38442											
CACNG5	27091	broad.mit.edu	37	chr17	64875131	64875131	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatagaatatgtgatgCccatgaacacccagctgaca	7	12	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64875131	T	T	64875131	3	4	21	1	0	0	0	0	1	0	0	0	2586	739	26	4	244	4	CACNG5	17	64875131	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5319005	64875131	16320079	1395	38443											
HELZ	9931	broad.mit.edu	37	chr17	65197255	65197255	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggccttacctctgtttctGagagaagtgtttttagtctt	9	7	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65197255	C	C	65197255	4	2	21	1	0	0	0	0	0	1	0	0	7116	1294	45	4	5517	4	HELZ	17	65197255	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	322124	65197255	15997955	1396	38444											
BPTF	2186	broad.mit.edu	37	chr17	65822303	65822303	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggacggcgacgccgaggagAcccaggattctgaggacgac	16	11	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65822303	G	G	65822303	3	3	21	1	0	0	0	0	1	0	0	0	1504	275	10	5	465	5	BPTF	17	65822303	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	625048	65822303	15372907	1397	38445											
WIPI1	55062	broad.mit.edu	37	chr17	66446810	66446810	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatcttgaaagatgtccatCtttttgtttggctcccgtta	8	8	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66446810	T	T	66446810	1	4	21	0	1	0	0	0	0	0	0	0	17497	928	32	4		4	WIPI1	17	66446810	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	624507	66446810	14748400	1398	38446											
ABCA8	10351	broad.mit.edu	37	chr17	66871472	66871472	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctccacttgtgccaggttCttcaccttcatctccagcag	8	15	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66871472	G	G	66871472	3	3	21	1	0	0	0	0	1	0	0	0	38	912	32	4	321	4	ABCA8	17	66871472	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	424662	66871472	14323738	1399	38447											
ABCA10	10349	broad.mit.edu	37	chr17	67189378	67189378	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccagcagttggttcatcTagcagcaaaacctacagagg	9	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67189378	C	C	67189378	2	2	21	1	0	0	0	0	0	0	0	1	29	1509	53	5		5	ABCA10	17	67189378	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	317906	67189378	14005832	1400	38448											
ABCA5	23461	broad.mit.edu	37	chr17	67303002	67303002	+	Frame_Shift_Del	DEL	G	-	-													gtatattaaaattactcctcGgggaaaggtatctatttcta							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67303002	-	-	67303002	7	5	21	1	0	1	0	1	0	0	0	0	35	1124	39	0	4412	0	ABCA5	17	67303002	Frame_Shift_Del	DEL	G	TCGA-05-4424-01A-22D-1855-08	113624	67303002	13892208	1401	38449											
KCNJ16	3773	broad.mit.edu	37	chr17	68129006	68129006	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtccatgaaattgaccatGagagccctctgtatgccctt	8	11	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68129006	C	C	68129006	3	2	21	1	0	0	0	0	1	0	0	0	8120	1291	45	4	780	4	KCNJ16	17	68129006	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	826004	68129006	13066204	1402	38450											
RAB37	326624	broad.mit.edu	37	chr17	72739292	72739292	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacaccgctgggcaggaaCggttccgaagcgtcacccat	14	13	1	0	rs148960641		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72739292	T	T	72739292	3	4	21	1	0	0	0	0	1	0	0	0	13035	527	19	4	588	4	RAB37	17	72739292	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4610286	72739292	8455918	1403	38451											
ARMC7	79637	broad.mit.edu	37	chr17	73106466	73106466	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacggaattccaggagacccAaagccaaggtgagagccacg	12	12	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73106466	T	T	73106466	3	4	21	1	0	0	0	0	1	0	0	0	960	130	5	5	85	5	ARMC7	17	73106466	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	367174	73106466	8088744	1404	38452											
NUP85	79902	broad.mit.edu	37	chr17	73222031	73222031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaggaagaccctttccttTggcccttagtgaaagaacaa	8	10	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73222031	C	C	73222031	1	2	21	0	1	0	0	0	0	0	0	0	10865	1827	63	5		5	NUP85	17	73222031	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	115565	73222031	7973179	1405	38453											
GGA3	23163	broad.mit.edu	37	chr17	73238543	73238543	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcttggtcaccttctggatCcgtgcctcgtcctgccccag	10	17	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73238543	T	T	73238543	2	4	21	1	0	0	0	0	0	0	0	1	6418	842	30	4		4	GGA3	17	73238543	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	16512	73238543	7956667	1406	38454											
RECQL5	9400	broad.mit.edu	37	chr17	73627074	73627074	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggggtacaaattcttctAtcttggggtctttgccctgg	12	9	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73627074	T	T	73627074	3	4	21	1	0	0	0	0	1	0	0	0	13311	449	16	5	1450	5	RECQL5	17	73627074	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	388531	73627074	7568136	1407	38455											
SAP30BP	29115	broad.mit.edu	37	chr17	73663513	73663513	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acgcggaagattcagagcccGagtctgatggcgaggctgga	16	9	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73663513	C	C	73663513	3	2	21	1	0	0	0	0	1	0	0	0	13946	1059	37	4	63	4	SAP30BP	17	73663513	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	36439	73663513	7531697	1408	38456											
SAP30BP	29115	broad.mit.edu	37	chr17	73663574	73663574	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctggtaaggcccaagtgcGaagctggaagggggaatcgg	19	7	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73663574	A	A	73663574	1	1	21	0	1	0	0	0	0	0	0	0	13946	1073	37	4		4	SAP30BP	17	73663574	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	61	73663574	7531636	1409	38457											
WBP2	23558	broad.mit.edu	37	chr17	73851355	73851355	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgatcactccgccgccctcCgagtgattcttgttgagcgc	10	15	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73851355	T	T	73851355	2	4	21	1	0	0	0	0	0	0	0	1	17386	639	23	4		4	WBP2	17	73851355	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	187781	73851355	7343855	1410	38458											
ASPSCR1	79058	broad.mit.edu	37	chr17	79937133	79937133	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagtgagtttgctccagctCagcagcagggtctgagtata	13	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79937133	G	G	79937133	1	3	21	0	1	0	0	0	0	0	0	0	1063	841	29	4		4	ASPSCR1	17	79937133	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6085778	79937133	1258077	1411	38459											
SMCHD1	23347	broad.mit.edu	37	chr18	2674057	2674057	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgctgttgcagtgatagAtaatggaagaggaatgacct	12	6	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2674057	G	G	2674057	3	3	21	1	0	0	0	0	1	0	0	0	14902	333	12	5	569	5	SMCHD1	18	2674057	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08		2674057	75403191	1412	38460											
LPIN2	9663	broad.mit.edu	37	chr18	2922155	2922155	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgggtcatgtcggccatGccgatggcacgagccgagca	14	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2922155	T	T	2922155	2	4	21	1	0	0	0	0	0	0	0	1	9006	1306	46	3		3	LPIN2	18	2922155	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	248098	2922155	75155093	1413	38461											
ARHGAP28	79822	broad.mit.edu	37	chr18	6882188	6882188	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgataaatttaaatgggAcaaaatgtgccatagagaag	10	4	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6882188	G	G	6882188	3	3	21	1	0	0	0	0	1	0	0	0	879	275	10	5	900	5	ARHGAP28	18	6882188	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	3960033	6882188	71195060	1414	38462											
LRRC30	339291	broad.mit.edu	37	chr18	7231306	7231306	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcagcttcagcctggtcaCgagaggaatgacagacatcc	11	12	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7231306	T	T	7231306	3	4	21	1	0	0	0	0	1	0	0	0	9072	536	19	4	172	4	LRRC30	18	7231306	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	349118	7231306	70845942	1415	38463											
RAB31	11031	broad.mit.edu	37	chr18	9775294	9775294	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacactggggttgggaaatCaagcatcgtgtgtcgatttg	15	6	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9775294	T	T	9775294	3	4	21	1	0	0	0	0	1	0	0	0	13028	838	29	4	65	4	RAB31	18	9775294	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2543988	9775294	68301954	1416	38464											
FAM38B	63895	broad.mit.edu	37	chr18	10671680	10671680	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattcgatccacatttggAagctcttcaaacatgatgga	7	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10671680	G	G	10671680	2	3	21	1	0	0	0	0	0	0	0	1	5606	233	9	5		5	FAM38B	18	10671680	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	896386	10671680	67405568	1417	38465											
FAM38B	63895	broad.mit.edu	37	chr18	10696600	10696600	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagggcaggatggcagaaatGaccagacactgccatcatgc	12	10	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10696600	T	T	10696600	1	4	21	0	1	0	0	0	0	0	0	0	5606	1305	45	3		3	FAM38B	18	10696600	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	24920	10696600	67380648	1418	38466											
CEP76	79959	broad.mit.edu	37	chr18	12680695	12680695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctcccaaaaagtgatggCcccatcagttccacaagtca	6	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12680695	A	A	12680695	3	1	21	1	0	0	0	0	1	0	0	0	3291	739	26	3	740	3	CEP76	18	12680695	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1984095	12680695	65396553	1419	38467											
POTEC	388468	broad.mit.edu	37	chr18	14513950	14513950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctctcccagtcatgttGgcaccagggactagttttgt	10	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14513950	T	T	14513950	1	4	21	0	1	0	0	0	0	0	0	0	12358	1363	47	2		2	POTEC	18	14513950	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1833255	14513950	63563298	1420	38468											
ANKRD30B	374860	broad.mit.edu	37	chr18	14799008	14799008	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttcaatccaagcatcatGaggattcgtcttcatattca	5	10	5	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14799008	T	T	14799008	1	4	21	0	1	0	0	0	0	0	0	0	659	1305	45	3		3	ANKRD30B	18	14799008	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	285058	14799008	63278240	1421	38469											
LAMA3	3909	broad.mit.edu	37	chr18	21441740	21441740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccatccacagcgcgtcctGggtcgcacccacctcctacc	7	20	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21441740	T	T	21441740	3	4	21	1	0	0	0	0	1	0	0	0	8679	1357	47	2	4691	2	LAMA3	18	21441740	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6642732	21441740	56635508	1422	38470											
IMPACT	55364	broad.mit.edu	37	chr18	22020507	22020507	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaagatgttgaatgtgaaGatgatctcattttagcatgt	11	3	1	5			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22020507	A	A	22020507	3	1	21	1	0	0	0	0	1	0	0	0	7794	942	33	4	437	4	IMPACT	18	22020507	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	578767	22020507	56056741	1423	38471											
ZNF521	25925	broad.mit.edu	37	chr18	22806338	22806338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccatatagcaatggggaCaaaagaatgcattactatct	7	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22806338	A	A	22806338	3	1	21	1	0	0	0	0	1	0	0	0	18092	478	17	3	2411	3	ZNF521	18	22806338	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	785831	22806338	55270910	1424	38472											
TAF4B	6875	broad.mit.edu	37	chr18	23845200	23845200	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctcagcaaactgtaacaaGagccgagaccacaagtaaca	7	12	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23845200	T	T	23845200	3	4	21	1	0	0	0	0	1	0	0	0	15646	942	33	3	416	3	TAF4B	18	23845200	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1038862	23845200	54232048	1425	38473											
TAF4B	6875	broad.mit.edu	37	chr18	23906843	23906843	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtttgcttaatagaaaCaaaatcattaccttctgaaa	6	6	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23906843	T	T	23906843	1	4	21	0	1	0	0	0	0	0	0	0	15646	493	17	4		4	TAF4B	18	23906843	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	61643	23906843	54170405	1426	38474											
DSC1	1823	broad.mit.edu	37	chr18	28737517	28737517	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggattaggctggccgacttGagacactcctccagattcac	10	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28737517	C	C	28737517	2	2	21	1	0	0	0	0	0	0	0	1	4805	1277	45	4		4	DSC1	18	28737517	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	4830674	28737517	49339731	1427	38475											
FHOD3	80206	broad.mit.edu	37	chr18	34288915	34288915	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattgcctcgatgagtgtttGaataaccagggcataggtct	11	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34288915	A	A	34288915	1	1	21	0	1	0	0	0	0	0	0	0	5940	1305	45	4		4	FHOD3	18	34288915	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5551398	34288915	43788333	1428	38476											
KIAA1632	57724	broad.mit.edu	37	chr18	43493839	43493839	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaaggaggagctcgcccCactgacgaaatacatcctga	13	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43493839	T	T	43493839	1	4	21	0	1	0	0	0	0	0	0	0	8319	609	21	4		4	KIAA1632	18	43493839	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	9204924	43493839	34583409	1429	38477											
MRO	83876	broad.mit.edu	37	chr18	48331607	48331607	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggatcttgcccagaacgaCggtcagagtcttcatactct	9	12	5	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48331607	T	T	48331607	3	4	21	1	0	0	0	0	1	0	0	0	9866	536	19	4	416	4	MRO	18	48331607	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	4837768	48331607	29745641	1430	38478											
NEDD4L	23327	broad.mit.edu	37	chr18	55989597	55989597	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtaatccagttgcctgTatctaaaacatgaaattatt	5	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55989597	A	A	55989597	1	1	21	0	1	0	0	0	0	0	0	0	10406	1653	57	5		5	NEDD4L	18	55989597	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	7657990	55989597	22087651	1431	38479											
ALPK2	115701	broad.mit.edu	37	chr18	56165371	56165371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggagtttgtgttactcaGggcccctcaggaagttgggc	15	8	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56165371	T	T	56165371	1	4	21	0	1	0	0	0	0	0	0	0	545	1015	35	2		2	ALPK2	18	56165371	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	175774	56165371	21911877	1432	38480											
CDH20	28316	broad.mit.edu	37	chr18	59195204	59195204	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcattgcttttcagccccTgagttttgaaagcaagaaaa	8	8	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59195204	C	C	59195204	3	2	21	1	0	0	0	0	1	0	0	0	3136	1580	55	5	1044	5	CDH20	18	59195204	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	3029833	59195204	18882044	1433	38481											
CDH20	28316	broad.mit.edu	37	chr18	59206530	59206530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtatatcaggtttcaacCatttatttgttaagacaact	5	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59206530	A	A	59206530	1	1	21	0	1	0	0	0	0	0	0	0	3136	609	21	2		2	CDH20	18	59206530	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	11326	59206530	18870718	1434	38482											
PHLPP1	23239	broad.mit.edu	37	chr18	60506065	60506065	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttagcatttagctcctctGgaccccaaagccagacttac	7	13	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60506065	T	T	60506065	4	4	21	1	0	0	0	0	0	1	0	0	11949	1349	47	2	1832	2	PHLPP1	18	60506065	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1299535	60506065	17571183	1435	38483											
VPS4B	9525	broad.mit.edu	37	chr18	61082738	61082738	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcttggcaatttttctctGgttgatcccctgggtcaggt	11	9	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61082738	A	A	61082738	1	1	21	0	1	0	0	0	0	0	0	0	17340	1363	47	4		4	VPS4B	18	61082738	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	576673	61082738	16994510	1436	38484											
SERPINB4	6318	broad.mit.edu	37	chr18	61326698	61326698	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcagctcatatgcatcagTggatttgttgaattcagtca	8	8	5	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61326698	C	C	61326698	3	2	21	1	0	0	0	0	1	0	0	0	14216	1696	59	5		5	SERPINB4	18	61326698	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	243960	61326698	16750550	1437	38485											
SERPINB2	5055	broad.mit.edu	37	chr18	61562575	61562575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaccagctgtgggttcatGcagcagatccagaagggtag	13	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61562575	T	T	61562575	3	4	21	1	0	0	0	0	1	0	0	0	14214	1319	46	3	252	3	SERPINB2	18	61562575	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	235877	61562575	16514673	1438	38486											
DOK6	220164	broad.mit.edu	37	chr18	67365537	67365537	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcacctagggaggatgtgGtcatgtttcctgcagtctgt	12	8	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67365537	T	T	67365537	1	4	21	0	1	0	0	0	0	0	0	0	4741	1276	44	3		3	DOK6	18	67365537	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	5802962	67365537	10711711	1439	38487											
RTTN	25914	broad.mit.edu	37	chr18	67871251	67871251	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaatcctttttaaaaaaatCtaatctccctttccttaaaa	1	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67871251	A	A	67871251	1	1	21	0	1	0	0	0	0	0	0	0	13848	928	32	3		3	RTTN	18	67871251	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	505714	67871251	10205997	1440	38488											
SALL3	27164	broad.mit.edu	37	chr18	76754668	76754668	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagagccgcagcgcgggcAgccccgccctgtccgagtcc	15	17	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76754668	T	T	76754668	3	4	21	1	0	0	0	0	1	0	0	0	13923	188	7	5	2683	5	SALL3	18	76754668	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	8883417	76754668	1322580	1441	38489											
ATP9B	374868	broad.mit.edu	37	chr18	77090116	77090116	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggtatgtgagtgActctagcgtggttcacagtg	16	5	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77090116	T	T	77090116	1	4	21	0	1	0	0	0	0	0	0	0	1203	290	10	5		5	ATP9B	18	77090116	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	335448	77090116	987132	1442	38490											
NFATC1	4772	broad.mit.edu	37	chr18	77208722	77208722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggttttctctgcgttccGgtgactcccggcggtctgtg	14	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77208722	T	T	77208722	1	4	21	0	1	0	0	0	0	0	0	0	10456	1131	39	1		1	NFATC1	18	77208722	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	118606	77208722	868526	1443	38491											
PTBP1	5725	broad.mit.edu	37	chr19	807774	807774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccactgcacgcctgcggGgactgtcttcctcgtgtgga	12	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	807774	T	T	807774	1	4	21	0	1	0	0	0	0	0	0	0	12831	1247	43	2		2	PTBP1	19	807774	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08		807774	58321209	1444	38492											
UQCR11	10975	broad.mit.edu	37	chr19	1599507	1599507	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcagccgccaatcggtggCccacaccagccccacggcgc	11	19	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1599507	T	T	1599507	3	4	21	1	0	0	0	0	1	0	0	0	17143	739	26	4	71	4	UQCR11	19	1599507	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	791733	1599507	57529476	1445	38493											
ZNF556	80032	broad.mit.edu	37	chr19	2873608	2873608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggagaccttcaagcacCtggcctcagtaggtgaggat	13	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2873608	A	A	2873608	3	1	21	1	0	0	0	0	1	0	0	0	18114	680	24	2	124	2	ZNF556	19	2873608	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1274101	2873608	56255375	1446	38494											
PTPRS	5802	broad.mit.edu	37	chr19	5206810	5206810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgcatagtggtcaaagcttCcgaggtactccagtgccgcc	11	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5206810	T	T	5206810	3	4	21	1	0	0	0	0	1	0	0	0	12919	855	30	4	28	4	PTPRS	19	5206810	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2333202	5206810	53922173	1447	38495											
PTPRS	5802	broad.mit.edu	37	chr19	5244311	5244311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgagttggggctcaggcCgccgatgctgtaacgtgtgg	16	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5244311	A	A	5244311	3	1	21	1	0	0	0	0	1	0	0	0	12919	652	23	1	4787	1	PTPRS	19	5244311	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	37501	5244311	53884672	1448	38496											
EMR1	2015	broad.mit.edu	37	chr19	6921873	6921873	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggcaaatcttgccgttatCatggcgtctggggagctcac	12	10	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6921873	T	T	6921873	2	4	21	1	0	0	0	0	0	0	0	1	5146	816	29	4		4	EMR1	19	6921873	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	1677562	6921873	52207110	1449	38497											
FBN3	84467	broad.mit.edu	37	chr19	8151216	8151216	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattcattgtcatctgagaTgggaggggtgaggcaggtgg	18	5	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8151216	C	C	8151216	1	2	21	0	1	0	0	0	0	0	0	0	5761	1479	51	5		5	FBN3	19	8151216	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	1229343	8151216	50977767	1450	38498											
MYO1F	4542	broad.mit.edu	37	chr19	8601438	8601438	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagccggctctgcgcacccTgatgttctccttcaggccca	10	16	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8601438	G	G	8601438	2	3	21	1	0	0	0	0	0	0	0	1	10167	1579	55	5		5	MYO1F	19	8601438	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	450222	8601438	50527545	1451	38499											
MUC16	94025	broad.mit.edu	37	chr19	8968993	8968993	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcagaatcctggccccagTagcatcagagaattttcagc	10	11	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8968993	C	C	8968993	1	2	21	0	1	0	0	0	0	0	0	0	10067	1653	57	5		5	MUC16	19	8968993	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	367555	8968993	50159990	1452	38500											
MUC16	94025	broad.mit.edu	37	chr19	9018636	9018636	+	Intron	SNP	C	A	A													agaatagacttatctttaaaCatgtgcaaaatttaaattga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9018636	A	A	9018636	1	1	21	0	1	0	0	0	0	0	0	0	10067	493	17	3		3	MUC16	19	9018636	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	49643	9018636	50110347	1453	38501	211	2									
MUC16	94025	broad.mit.edu	37	chr19	9018640	9018640	+	Intron	SNP	T	G	G													tagacttatctttaaacatgTgcaaaatttaaattgagaaa							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9018640	G	G	9018640	1	3	21	0	1	0	0	0	0	0	0	0	10067	1711	59	5		5	MUC16	19	9018640	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	4	9018640	50110343	1454	38502	211	2									
MUC16	94025	broad.mit.edu	37	chr19	9028316	9028316	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcccagtacagtcgctctCtgtccagtccgaggtcttca	9	15	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9028316	G	G	9028316	3	3	21	1	0	0	0	0	1	0	0	0	10067	913	32	4	7343	4	MUC16	19	9028316	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	9676	9028316	50100667	1455	38503											
MUC16	94025	broad.mit.edu	37	chr19	9049864	9049864	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtatctggctcactagaAgaaacatctagagtttgaat	9	6	3	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9049864	G	G	9049864	2	3	21	1	0	0	0	0	0	0	0	1	10067	59	3	5		5	MUC16	19	9049864	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	21548	9049864	50079119	1456	38504											
MUC16	94025	broad.mit.edu	37	chr19	9059267	9059267	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtagctgagtgagttccTggccaggaggctgtgcttga	16	7	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9059267	A	A	9059267	2	1	21	1	0	0	0	0	0	0	0	1	10067	1567	55	5		5	MUC16	19	9059267	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	9403	9059267	50069716	1457	38505											
MUC16	94025	broad.mit.edu	37	chr19	9071588	9071589	+	Frame_Shift_Ins	INS	-	A	A													aaagtgtggttgatgtgtccINSaagggaagggtactgtgcga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9071589	A	A	9071588	7	5	21	1	0	1	1	0	0	0	0	0	10067	593	21	0	27993	0	MUC16	19	9071588	Frame_Shift_Ins	INS	-	TCGA-05-4424-01A-22D-1855-08	12321	9071588	50057395	1458	38506											
ZNF560	147741	broad.mit.edu	37	chr19	9585954	9585954	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtggaagtatacattttctGcatacctgataacaatttgt	7	6	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9585954	C	C	9585954	1	2	21	0	1	0	0	0	0	0	0	0	18118	1334	46	4		4	ZNF560	19	9585954	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	514366	9585954	49543029	1459	38507											
ICAM5	7087	broad.mit.edu	37	chr19	10403932	10403932	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacggtggagtgtgagtgggGgtgcgcagggtgcatttcta	19	5	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10403932	A	A	10403932	1	1	21	0	1	0	0	0	0	0	0	0	7553	1247	43	4		4	ICAM5	19	10403932	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	817978	10403932	48725051	1460	38508											
DNM2	1785	broad.mit.edu	37	chr19	10923017	10923017	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggagtactggtttgtgctGactgccgagtcactgtcctg	13	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10923017	T	T	10923017	2	4	21	1	0	0	0	0	0	0	0	1	4712	1277	45	3		3	DNM2	19	10923017	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	519085	10923017	48205966	1461	38509											
ZNF653	115950	broad.mit.edu	37	chr19	11608978	11608978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacaagacacgcagaccCgggtttgaggtcgggctctg	14	11	1	4	rs150397476	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11608978	A	A	11608978	1	1	21	0	1	0	0	0	0	0	0	0	18193	667	23	1		1	ZNF653	19	11608978	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	685961	11608978	47520005	1462	38510											
CNN1	1264	broad.mit.edu	37	chr19	11660685	11660685	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacccagccaggcccagcCgaccccctctccctgcatgg	10	20	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11660685	A	A	11660685	1	1	21	0	1	0	0	0	0	0	0	0	3641	667	23	1		1	CNN1	19	11660685	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	51707	11660685	47468298	1463	38511											
ZNF136	7695	broad.mit.edu	37	chr19	12298356	12298356	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacatgataaaacatactgGagaaggaccttataaatgta	7	6	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12298356	T	T	12298356	3	4	21	1	0	0	0	0	1	0	0	0	17852	1174	41	3	1177	3	ZNF136	19	12298356	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	637671	12298356	46830627	1464	38512											
CC2D1A	54862	broad.mit.edu	37	chr19	14034556	14034556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagcatggacattctgaaGcaagccttcgtccggggtct	13	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14034556	T	T	14034556	3	4	21	1	0	0	0	0	1	0	0	0	2752	962	34	3	1938	3	CC2D1A	19	14034556	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1736200	14034556	45094427	1465	38513											
CD97	976	broad.mit.edu	37	chr19	14513455	14513455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagaacatgacgacattGctggccaatgcctccttgaa	8	12	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14513455	T	T	14513455	3	4	21	1	0	0	0	0	1	0	0	0	3079	1310	46	3	1276	3	CD97	19	14513455	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	478899	14513455	44615528	1466	38514											
OR7A10	390892	broad.mit.edu	37	chr19	14952214	14952214	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcaacaccattaagcttTgtaacatggaattcagaaca	8	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14952214	A	A	14952214	3	1	21	1	0	0	0	0	1	0	0	0	11308	1812	63	5	457	5	OR7A10	19	14952214	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	438759	14952214	44176769	1467	38515											
CYP4F8	11283	broad.mit.edu	37	chr19	15734867	15734867	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgccggcaggaggtgcaaGagcttctgaaggaccgtgag	17	9	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15734867	T	T	15734867	4	4	21	1	0	0	0	0	0	1	0	0	4224	943	33	3	1107	3	CYP4F8	19	15734867	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	782653	15734867	43394116	1468	38516											
CYP4F12	66002	broad.mit.edu	37	chr19	15784533	15784533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttttggggtcacctggGcctggtgagtgtgacagcaa	16	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15784533	T	T	15784533	3	4	21	1	0	0	0	0	1	0	0	0	4220	1203	42	3	196	3	CYP4F12	19	15784533	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	49666	15784533	43344450	1469	38517											
OR10H4	126541	broad.mit.edu	37	chr19	16060501	16060501	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcattgtggctgccatcttGaggattccctctgccgaagg	11	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16060501	C	C	16060501	3	2	21	1	0	0	0	0	1	0	0	0	11002	1281	45	4	686	4	OR10H4	19	16060501	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	275968	16060501	43068482	1470	38518											
TMEM38A	79041	broad.mit.edu	37	chr19	16799110	16799110	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccaggagctcagcattcGgccatgcccgccaagtccaa	12	15	1	0	rs142098397		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16799110	A	A	16799110	2	1	21	1	0	0	0	0	0	0	0	1	16282	1103	39	4		4	TMEM38A	19	16799110	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	738609	16799110	42329873	1471	38519											
NWD1	284434	broad.mit.edu	37	chr19	16910855	16910855	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgatgctcataggtcccgGgtgcctgcaccatttctgga	12	12	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16910855	A	A	16910855	2	1	21	1	0	0	0	0	0	0	0	1	10876	1219	43	4		4	NWD1	19	16910855	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	111745	16910855	42218128	1472	38520											
HAUS8	93323	broad.mit.edu	37	chr19	17160601	17160601	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacaggtttacttttttatCaaacaagattatcacataaa	3	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17160601	G	G	17160601	1	3	21	0	1	0	0	0	0	0	0	0	7038	841	29	4		4	HAUS8	19	17160601	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	249746	17160601	41968382	1473	38521											
ABHD8	79575	broad.mit.edu	37	chr19	17411939	17411939	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagctagtgatgcgcttctCacagtcaatatggatggtcc	11	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17411939	G	G	17411939	3	3	21	1	0	0	0	0	1	0	0	0	87	835	29	4	848	4	ABHD8	19	17411939	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	251338	17411939	41717044	1474	38522											
JAK3	3718	broad.mit.edu	37	chr19	17949217	17949217	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctatggggagaggatgaGggagaaaaaccagaaatcag	14	4	2	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17949217	A	A	17949217	1	1	21	0	1	0	0	0	0	0	0	0	8009	1015	35	4		4	JAK3	19	17949217	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	537278	17949217	41179766	1475	38523											
COMP	1311	broad.mit.edu	37	chr19	18899889	18899889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcccgctggaaggaggCtggaagaggagtttactggt	15	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18899889	A	A	18899889	1	1	21	0	1	0	0	0	0	0	0	0	3756	812	28	3		3	COMP	19	18899889	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	950672	18899889	40229094	1476	38524											
NDUFA13	51079	broad.mit.edu	37	chr19	19645921	19645921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagcagaacggggcagtgGggctggtctgtgcccggcac	19	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19645921	T	T	19645921	3	4	21	1	0	0	0	0	1	0	0	0	10358	1232	43	2		2	NDUFA13	19	19645921	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	746032	19645921	39483062	1477	38525											
ZNF626	199777	broad.mit.edu	37	chr19	20829315	20829315	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaactggttctgacttaTaggactgactaaaattatcc	8	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20829315	C	C	20829315	1	2	21	0	1	0	0	0	0	0	0	0	18177	1421	49	5		5	ZNF626	19	20829315	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	1183394	20829315	38299668	1478	38526											
ZNF676	163223	broad.mit.edu	37	chr19	22364202	22364202	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atactttgctctgtgtagttGttaaactctggttaagttta	8	5	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22364202	A	A	22364202	3	1	21	1	0	0	0	0	1	0	0	0	18210	1377	48	4	1453	4	ZNF676	19	22364202	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1534887	22364202	36764781	1479	38527											
ZNF536	9745	broad.mit.edu	37	chr19	30934628	30934628	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccccgagctccatccccgGcccaaccccgaggagaagcc	9	20	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934628	T	T	30934628	2	4	21	1	0	0	0	0	0	0	0	1	18101	1190	42	3		3	ZNF536	19	30934628	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	8570426	30934628	28194355	1480	38528											
ZNF536	9745	broad.mit.edu	37	chr19	30936268	30936268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccaagtaagctcgaccCtttagaaagcagtcgggatt	10	11	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30936268	A	A	30936268	3	1	21	1	0	0	0	0	1	0	0	0	18101	681	24	2	1801	2	ZNF536	19	30936268	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1640	30936268	28192715	1481	38529											
ZNF536	9745	broad.mit.edu	37	chr19	31040277	31040277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggcgggcctgccaaagCcggagcgggggccccagagc	17	15	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31040277	A	A	31040277	3	1	21	1	0	0	0	0	1	0	0	0	18101	739	26	3	3761	3	ZNF536	19	31040277	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	104009	31040277	28088706	1482	38530											
TSHZ3	57616	broad.mit.edu	37	chr19	31770676	31770677	+	Intron	DNP	GG	TT	TT													aggctgccatgataacaggtGggaaagagagacaggtagga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31770677	TT	TT	31770676	1	4	21	0	1	0	0	0	0	0	0	0	16750	1363	47	2		2	TSHZ3	19	31770676	Intron	DNP	GG	TCGA-05-4424-01A-22D-1855-08	730399	31770676	27358307	1483	38531											
GPATCH1	55094	broad.mit.edu	37	chr19	33603360	33603360	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtcagtggtgcggccaCttgatggaacagaatgcatg	14	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33603360	T	T	33603360	1	4	21	0	1	0	0	0	0	0	0	0	6655	580	20	4		4	GPATCH1	19	33603360	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1832684	33603360	25525623	1484	38532											
GAPDHS	26330	broad.mit.edu	37	chr19	36033824	36033824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgactcacctcacagtgtcCgtgcacaccttggctgtttc	9	15	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36033824	A	A	36033824	1	1	21	0	1	0	0	0	0	0	0	0	6299	667	23	1		1	GAPDHS	19	36033824	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2430464	36033824	23095159	1485	38533											
WDR62	284403	broad.mit.edu	37	chr19	36562587	36562587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaagccacactaccttGgggtagacgtggcacagggc	13	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36562587	T	T	36562587	3	4	21	1	0	0	0	0	1	0	0	0	17440	1348	47	2	1042	2	WDR62	19	36562587	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	528763	36562587	22566396	1486	38534											
COX7A1	1346	broad.mit.edu	37	chr19	36642525	36642525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctgccccggctcggcgCgctcccggctggcgcgtcgg	16	20	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36642525	T	T	36642525	1	4	21	0	1	0	0	0	0	0	0	0	3811	783	27	4		4	COX7A1	19	36642525	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	79938	36642525	22486458	1487	38535											
ZNF260	339324	broad.mit.edu	37	chr19	37006026	37006026	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctctacaaggttttgctTcaggctaaaagtttttctac	7	8	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37006026	A	A	37006026	4	1	21	1	0	0	0	0	0	1	0	0	17928	1792	62	5	1127	5	ZNF260	19	37006026	Nonsense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	363501	37006026	22122957	1488	38536											
ZNF829	374899	broad.mit.edu	37	chr19	37399297	37399297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtataaattcatctgatcaGcgtccaggcattcccattcc	6	12	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37399297	T	T	37399297	3	4	21	1	0	0	0	0	1	0	0	0	18311	971	34	3	1149	3	ZNF829	19	37399297	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	393271	37399297	21729686	1489	38537											
ZNF420	147923	broad.mit.edu	37	chr19	37618899	37618907	+	In_Frame_Del	DEL	GAATGTAAG	-	-													ataatggggaaaaaccatatGaatgtaaggaatgtggaagg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37618907	-	-	37618899	7	5	21	1	0	1	0	1	0	0	0	0	18024	1291	45	0	1016	0	ZNF420	19	37618899	In_Frame_Del	DEL	GAATGTAAG	TCGA-05-4424-01A-22D-1855-08	219602	37618899	21510084	1490	38538											
ZNF571	51276	broad.mit.edu	37	chr19	38056663	38056663	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccacatgcgttacactgatAaggtttttcattagtatgaa	7	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38056663	G	G	38056663	3	3	21	1	0	0	0	0	1	0	0	0	18130	362	13	5	1166	5	ZNF571	19	38056663	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	437764	38056663	21072320	1491	38539											
ZNF781	163115	broad.mit.edu	37	chr19	38160023	38160023	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcattcccacattcattaCattcatagggtttctcccca	5	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38160023	A	A	38160023	1	1	21	0	1	0	0	0	0	0	0	0	18283	493	17	3		3	ZNF781	19	38160023	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	103360	38160023	20968960	1492	38540											
ZNF607	84775	broad.mit.edu	37	chr19	38190116	38190116	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgcattcatagggtttttCtccagtatgaattcttttat	6	7	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38190116	A	A	38190116	4	1	21	1	0	0	0	0	0	1	0	0	18160	922	32	3	1178	3	ZNF607	19	38190116	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	30093	38190116	20938867	1493	38541											
MAP4K1	11184	broad.mit.edu	37	chr19	39100387	39100387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcccggggtccatctgCtctctcctgtaaccctctgg	9	18	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39100387	A	A	39100387	1	1	21	0	1	0	0	0	0	0	0	0	9351	812	28	3		3	MAP4K1	19	39100387	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	910271	39100387	20028596	1494	38542											
MRPS12	6183	broad.mit.edu	37	chr19	39421872	39421872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggggagcatttgcggatcGgtcactttttcctcctttct	10	11	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39421872	T	T	39421872	1	4	21	0	1	0	0	0	0	0	0	0	9917	1131	39	1		1	MRPS12	19	39421872	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	321485	39421872	19707111	1495	38543											
LRFN1	57622	broad.mit.edu	37	chr19	39804663	39804663	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctggccagcggatgagCacggagttcgaggtgagctc	18	9	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39804663	A	A	39804663	2	1	21	1	0	0	0	0	0	0	0	1	9024	697	25	3		3	LRFN1	19	39804663	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	382791	39804663	19324320	1496	38544											
ITPKC	80271	broad.mit.edu	37	chr19	41243686	41243686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacgaggtgcgagccctGgcttccatgggtggatgtat	14	11	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41243686	T	T	41243686	1	4	21	0	1	0	0	0	0	0	0	0	7989	1363	47	2		2	ITPKC	19	41243686	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1439023	41243686	17885297	1497	38545											
CYP2A7	1549	broad.mit.edu	37	chr19	41382307	41382307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatcagctgctggctcaaGggtagattctaacaggaact	11	8	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41382307	T	T	41382307	1	4	21	0	1	0	0	0	0	0	0	0	4196	1015	35	2		2	CYP2A7	19	41382307	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	138621	41382307	17746676	1498	38546											
CYP2F1	1572	broad.mit.edu	37	chr19	41622361	41622361	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcttcctaccctcagcTgagcaaggagtatggctcca	9	13	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41622361	A	A	41622361	3	1	21	1	0	0	0	0	1	0	0	0	4204	1594	55	5	179	5	CYP2F1	19	41622361	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	240054	41622361	17506622	1499	38547											
ATP1A3	478	broad.mit.edu	37	chr19	42489545	42489545	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggagagcgagtctggggctCggattcgccagtcagggagg	20	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42489545	A	A	42489545	4	1	21	1	0	0	0	0	0	1	0	0	1134	893	31	3	2472	3	ATP1A3	19	42489545	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	867184	42489545	16639438	1500	38548											
GRIK5	2901	broad.mit.edu	37	chr19	42510926	42510926	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaggcggccaggttggcCgtgtaggaggagatgatgat	19	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42510926	T	T	42510926	2	4	21	1	0	0	0	0	0	0	0	1	6843	639	23	4		4	GRIK5	19	42510926	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	21381	42510926	16618057	1501	38549											
CEACAM8	1088	broad.mit.edu	37	chr19	43098787	43098787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccccttcccctctcttGtgtcctctcctctattaagg	6	16	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43098787	T	T	43098787	1	4	21	0	1	0	0	0	0	0	0	0	3228	1392	48	3		3	CEACAM8	19	43098787	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	587861	43098787	16030196	1502	38550											
PSG1	5669	broad.mit.edu	37	chr19	43348325	43348325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccagacacaaggtcagcCatgagaaaacaaaaacaaga	9	9	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43348325	A	A	43348325	1	1	21	0	1	0	0	0	0	0	0	0	12759	609	21	2		2	PSG1	19	43348325	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	249538	43348325	15780658	1503	38551			1	35		6	6	4035	N	T_G_C_A	3.627673e-06
PSG1	5669	broad.mit.edu	37	chr19	43352055	43352055	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcagaaagtcatggccagTtttgatgtccagggataaag	14	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43352055	C	C	43352055	1	2	21	0	1	0	0	0	0	0	0	0	12759	1740	60	5		5	PSG1	19	43352055	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	3730	43352055	15776928	1504	38552			1	35		6	6	4035	N	T_G_C_A	3.627673e-06
PSG1	5669	broad.mit.edu	37	chr19	43352070	43352070	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagttttgatgtccagggAtaaaggtctctgtacttgga	12	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43352070	G	G	43352070	1	3	21	0	1	0	0	0	0	0	0	0	12759	348	12	5		5	PSG1	19	43352070	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	15	43352070	15776913	1505	38553			1	35		6	6	4035	N	T_G_C_A	3.627673e-06
PSG1	5669	broad.mit.edu	37	chr19	43352145	43352145	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtatttgggatggcagcGtggctcacagaggaacagaa	15	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43352145	C	C	43352145	1	2	21	0	1	0	0	0	0	0	0	0	12759	1160	40	4		4	PSG1	19	43352145	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	75	43352145	15776838	1506	38554			1	35		6	6	4035	N	T_G_C_A	3.627673e-06
PSG1	5669	broad.mit.edu	37	chr19	43352204	43352204	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagggtgaatgggtcactgCggctggcactcactgggttc	15	10	3	1	rs146145281	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43352204	T	T	43352204	1	4	21	0	1	0	0	0	0	0	0	0	12759	783	27	4		4	PSG1	19	43352204	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	59	43352204	15776779	1507	38555			1	35		6	6	4035	N	T_G_C_A	3.627673e-06
PSG1	5669	broad.mit.edu	37	chr19	43352359	43352359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaccacaggtagcttgcGttcggagttgcaggatcaca	11	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43352359	T	T	43352359	1	4	21	0	1	0	0	0	0	0	0	0	12759	1160	40	3		3	PSG1	19	43352359	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	155	43352359	15776624	1508	38556			1	35		6	6	4035	N	T_G_C_A	3.627673e-06
PSG6	5675	broad.mit.edu	37	chr19	43414865	43414865	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggttttggacagctgcaaCctgtgagtcatagggaggtt	14	6	1	1	rs1058688		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43414865	G	G	43414865	3	3	21	1	0	0	0	0	1	0	0	0	12765	506	18	4	789	4	PSG6	19	43414865	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	62506	43414865	15714118	1509	38557											
PSG6	5675	broad.mit.edu	37	chr19	43520004	43520004	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagggtcctgtttcatttctCgtgacactgggtagaatgag	12	7	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43520004	G	G	43520004	1	3	21	0	1	0	0	0	0	0	0	0	12765	899	31	4		4	PSG6	19	43520004	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	105139	43520004	15608979	1510	38558											
PSG2	5670	broad.mit.edu	37	chr19	43576039	43576039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagagttcgcgaagcaagaCaagtagaggttatctcctga	11	7	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43576039	A	A	43576039	3	1	21	1	0	0	0	0	1	0	0	0	12761	477	17	3	238	3	PSG2	19	43576039	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	56035	43576039	15552944	1511	38559											
PSG6	5675	broad.mit.edu	37	chr19	43579858	43579858	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcatttttcaatcagagTtggcatttcccacctctcag	7	11	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43579858	C	C	43579858	1	2	21	0	1	0	0	0	0	0	0	0	12765	1740	60	5		5	PSG6	19	43579858	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	3819	43579858	15549125	1512	38560											
PSG6	5675	broad.mit.edu	37	chr19	43583712	43583712	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgtgctgatgcagggtgtGagtggggaaagaaaacaagg	17	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43583712	C	C	43583712	1	2	21	0	1	0	0	0	0	0	0	0	12765	1305	45	4		4	PSG6	19	43583712	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3854	43583712	15545271	1513	38561											
PSG6	5675	broad.mit.edu	37	chr19	43600834	43600834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataggtgtctgaaggataaGttgtgggttcatctgggcca	14	5	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43600834	T	T	43600834	1	4	21	0	1	0	0	0	0	0	0	0	12765	1044	36	3		3	PSG6	19	43600834	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	17122	43600834	15528149	1514	38562											
PSG5	5673	broad.mit.edu	37	chr19	43683108	43683108	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacattcatagggtcctgcaAtatactttgtgacaccaaat	6	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43683108	G	G	43683108	1	3	21	0	1	0	0	0	0	0	0	0	12764	116	4	5		5	PSG5	19	43683108	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	82274	43683108	15445875	1515	38563											
PSG5	5673	broad.mit.edu	37	chr19	43683120	43683120	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgcaatatactttgtgAcaccaaatataaagagggtc	8	8	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43683120	G	G	43683120	1	3	21	0	1	0	0	0	0	0	0	0	12764	290	10	5		5	PSG5	19	43683120	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	12	43683120	15445863	1516	38564											
PSG9	5678	broad.mit.edu	37	chr19	43763273	43763273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttgatggtgatgtaggGgatgggcagcttcgctgtgt	18	4	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43763273	T	T	43763273	3	4	21	1	0	0	0	0	1	0	0	0	12768	1232	43	2	568	2	PSG9	19	43763273	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	80153	43763273	15365710	1517	38565											
CADM4	199731	broad.mit.edu	37	chr19	44130810	44130810	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggcgtgagccaccgcgctCgacatcaaccactacatatt	8	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44130810	T	T	44130810	1	4	21	0	1	0	0	0	0	0	0	0	2595	899	31	4		4	CADM4	19	44130810	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	367537	44130810	14998173	1518	38566											
KCNN4	3783	broad.mit.edu	37	chr19	44273909	44273909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatcatgaagttgtgcaCgtgcttctctgccttgttaa	8	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44273909	A	A	44273909	3	1	21	1	0	0	0	0	1	0	0	0	8151	536	19	3	407	3	KCNN4	19	44273909	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	143099	44273909	14855074	1519	38567											
ZNF284	342909	broad.mit.edu	37	chr19	44585189	44585189	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagtgaccttcaaggatGtggctgtggtcttcaccgag	14	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44585189	A	A	44585189	3	1	21	1	0	0	0	0	1	0	0	0	17947	1377	48	4	43	4	ZNF284	19	44585189	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	311280	44585189	14543794	1520	38568											
ZNF284	342909	broad.mit.edu	37	chr19	44590804	44590804	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctttcaagacatcagcgGgtccacaatggagaaacaac	9	10	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44590804	T	T	44590804	2	4	21	1	0	0	0	0	0	0	0	1	17947	1219	43	2		2	ZNF284	19	44590804	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	5615	44590804	14538179	1521	38569											
ZNF226	7769	broad.mit.edu	37	chr19	44680896	44680897	+	Frame_Shift_Del	DEL	AG	-	-													ttcaaatcttcaagcccatcAgagagtccacactggagaga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44680897	-	-	44680896	7	5	21	1	0	1	0	1	0	0	0	0	17906	188	7	0	1549	0	ZNF226	19	44680896	Frame_Shift_Del	DEL	AG	TCGA-05-4424-01A-22D-1855-08	90092	44680896	14448087	1522	38570											
ZNF235	9310	broad.mit.edu	37	chr19	44791690	44791690	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctctggctgaaggccttaCcacaagtgtcacatttatat	7	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44791690	G	G	44791690	3	3	21	1	0	0	0	0	1	0	0	0	17914	507	18	4	322	4	ZNF235	19	44791690	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	110794	44791690	14337293	1523	38571											
ZFP112	7771	broad.mit.edu	37	chr19	44896373	44896373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgtaggtttctaacctgCacatgcatctcttaggagtt	8	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44896373	T	T	44896373	1	4	21	0	1	0	0	0	0	0	0	0	17764	725	25	4		4	ZFP112	19	44896373	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	104683	44896373	14232610	1524	38572											
ZFP112	7771	broad.mit.edu	37	chr19	44901291	44901291	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actcaaaaaatgctgacctcCtttcagaaaacagaagtgtc	6	10	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44901291	G	G	44901291	1	3	21	0	1	0	0	0	0	0	0	0	17764	696	24	4		4	ZFP112	19	44901291	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	4918	44901291	14227692	1525	38573											
CKM	1158	broad.mit.edu	37	chr19	45818777	45818777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacgggagcagtgtggggGcaacgtgtagcccttgatgc	17	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45818777	T	T	45818777	3	4	21	1	0	0	0	0	1	0	0	0	3479	1203	42	3	738	3	CKM	19	45818777	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	917486	45818777	13310206	1526	38574											
SNRPD2	6633	broad.mit.edu	37	chr19	46195106	46195106	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcggtcaaatatccaccctCaacctcattcccgccgccta	4	18	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46195106	T	T	46195106	1	4	21	0	1	0	0	0	0	0	0	0	14979	841	29	4		4	SNRPD2	19	46195106	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	376329	46195106	12933877	1527	38575											
DMWD	1762	broad.mit.edu	37	chr19	46287458	46287458	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagggagggttatggctagGaggctgggggcatggggttg	23	4	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46287458	C	C	46287458	1	2	21	0	1	0	0	0	0	0	0	0	4633	1189	41	4		4	DMWD	19	46287458	3'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	92352	46287458	12841525	1528	38576											
TMEM143	55260	broad.mit.edu	37	chr19	48845894	48845894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgttgacgaagatcgccaCgccggagactaccagcatga	11	13	0	4	rs148331223		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48845894	A	A	48845894	3	1	21	1	0	0	0	0	1	0	0	0	16180	536	19	3	523	3	TMEM143	19	48845894	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2558436	48845894	10283089	1529	38577											
PPP1R15A	23645	broad.mit.edu	37	chr19	49378083	49378083	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaggctgcccctccgactGcaaaggcggctcaagcgccc	11	18	1	0	rs138580661		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49378083	T	T	49378083	2	4	21	1	0	0	0	0	0	0	0	1	12464	1306	46	3		3	PPP1R15A	19	49378083	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	532189	49378083	9750900	1530	38578											
FTL	2512	broad.mit.edu	37	chr19	49469500	49469500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtttagttctatgtgccgAgtgtgtgtattctgagccat	12	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49469500	T	T	49469500	1	4	21	0	1	0	0	0	0	0	0	0	6144	319	11	5		5	FTL	19	49469500	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	91417	49469500	9659483	1531	38579											
CGB	1082	broad.mit.edu	37	chr19	49533389	49533389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtcacctgcttcaaggCcgataactctgaagaaggtg	10	10	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49533389	A	A	49533389	1	1	21	0	1	0	0	0	0	0	0	0	3326	754	26	3		3	CGB	19	49533389	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	63889	49533389	9595594	1532	38580											
CGB1	114335	broad.mit.edu	37	chr19	49539443	49539443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttgacggtgatgcacaCggggcagccctccttctcca	13	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49539443	A	A	49539443	3	1	21	1	0	0	0	0	1	0	0	0	3327	536	19	3	348	3	CGB1	19	49539443	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	6054	49539443	9589540	1533	38581											
CGB8	94115	broad.mit.edu	37	chr19	49552060	49552060	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttgtgggggcggcaaggCcaccaggaggttgtaggatg	21	6	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49552060	A	A	49552060	1	1	21	0	1	0	0	0	0	0	0	0	3331	754	26	3		3	CGB8	19	49552060	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	12617	49552060	9576923	1534	38582											
GPR32	2854	broad.mit.edu	37	chr19	51274412	51274412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccggacaaccagaaaatgGaatggctgtacgcactgcta	10	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51274412	T	T	51274412	3	4	21	1	0	0	0	0	1	0	0	0	6753	1183	41	3	557	3	GPR32	19	51274412	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1722352	51274412	7854571	1535	38583											
SIGLEC8	27181	broad.mit.edu	37	chr19	51960729	51960729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacaggacacatcgaggCggacggtactggtcgtggtc	14	11	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51960729	A	A	51960729	3	1	21	1	0	0	0	0	1	0	0	0	14427	768	27	3	804	3	SIGLEC8	19	51960729	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	686317	51960729	7168254	1536	38584											
ZNF175	7728	broad.mit.edu	37	chr19	52076428	52076428	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaacccccaggtcaggCcacatcattgaggctgcagg	12	13	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52076428	A	A	52076428	1	1	21	0	1	0	0	0	0	0	0	0	17871	754	26	3		3	ZNF175	19	52076428	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	115699	52076428	7052555	1537	38585											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52147104	52147104	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcaggtgaattcccctcCctctctagctcctatgttag	8	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52147104	A	A	52147104	4	1	21	1	0	0	0	0	0	1	0	0	14422	632	22	2	262	2	SIGLEC14	19	52147104	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	70676	52147104	6981879	1538	38586											
FPR3	2359	broad.mit.edu	37	chr19	52327484	52327484	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccttaccttaccaaatttCatcttctggactacaataag	4	11	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52327484	T	T	52327484	2	4	21	1	0	0	0	0	0	0	0	1	6100	825	29	4		4	FPR3	19	52327484	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	180380	52327484	6801499	1539	38587											
ZNF83	55769	broad.mit.edu	37	chr19	53156108	53156108	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatgatggcatacaaaggatGacatatgactgaaggtcttg	11	5	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53156108	A	A	53156108	1	1	21	0	1	0	0	0	0	0	0	0	18312	1305	45	4		4	ZNF83	19	53156108	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	828624	53156108	5972875	1540	38588											
ZNF83	55769	broad.mit.edu	37	chr19	53157381	53157381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaataaaagcttgatccaaGctgatctttaataggcttgt	8	6	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53157381	T	T	53157381	1	4	21	0	1	0	0	0	0	0	0	0	18312	986	34	3		3	ZNF83	19	53157381	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1273	53157381	5971602	1541	38589											
ZNF28	7576	broad.mit.edu	37	chr19	53303365	53303365	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaaccttacatttgtacGgtttctctccagtatgaatc	5	11	1	1	rs139244544		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53303365	A	A	53303365	3	1	21	1	0	0	0	0	1	0	0	0	17939	1116	39	4	427	4	ZNF28	19	53303365	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	145984	53303365	5825618	1542	38590											
ZNF28	7576	broad.mit.edu	37	chr19	53311326	53311326	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagagtcctctgagcagggtCcaggcatttccactcctcct	9	14	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53311326	T	T	53311326	3	4	21	1	0	0	0	0	1	0	0	0	17939	870	30	4		4	ZNF28	19	53311326	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	7961	53311326	5817657	1543	38591											
ZNF816A	125893	broad.mit.edu	37	chr19	53455907	53455907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgacatgtacatcaaaagCatgtatggggcaaaatcaca	8	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53455907	A	A	53455907	1	1	21	0	1	0	0	0	0	0	0	0	18306	725	25	3		3	ZNF816A	19	53455907	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	144581	53455907	5673076	1544	38592											
ZNF160	90338	broad.mit.edu	37	chr19	53572675	53572675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcttgccacattcattaCatttgaacggtttttctcca	6	10	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53572675	A	A	53572675	3	1	21	1	0	0	0	0	1	0	0	0	17865	478	17	3	1348	3	ZNF160	19	53572675	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	116768	53572675	5556308	1545	38593											
ZNF415	55786	broad.mit.edu	37	chr19	53611692	53611692	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtctgaagaggtttgggcGcacactaaaggacttcccac	11	10	1	2	rs138184993	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53611692	A	A	53611692	3	1	21	1	0	0	0	0	1	0	0	0	18019	1087	38	4	65	4	ZNF415	19	53611692	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	39017	53611692	5517291	1546	38594											
ZNF665	79788	broad.mit.edu	37	chr19	53668214	53668214	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacacttgtaaggtttttctCcagtatgaactctccaatgc	6	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53668214	G	G	53668214	3	3	21	1	0	0	0	0	1	0	0	0	18200	855	30	4	511	4	ZNF665	19	53668214	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	56522	53668214	5460769	1547	38595											
ZNF677	342926	broad.mit.edu	37	chr19	53740551	53740551	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagtatgagttctctgatGaccccaaaggtgtgaacgtt	10	9	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53740551	T	T	53740551	3	4	21	1	0	0	0	0	1	0	0	0	18211	1290	45	3	329	3	ZNF677	19	53740551	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	72337	53740551	5388432	1548	38596											
VN1R2	317701	broad.mit.edu	37	chr19	53762734	53762734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcccttttgttctcatgtGccgtgaccccagcagatcca	8	14	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53762734	T	T	53762734	3	4	21	1	0	0	0	0	1	0	0	0	17306	1319	46	3	1108	3	VN1R2	19	53762734	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	22183	53762734	5366249	1549	38597											
ZNF765	91661	broad.mit.edu	37	chr19	53911608	53911608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcgtagatgtcacactgGtgagaaaccttacaagtgta	9	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53911608	T	T	53911608	3	4	21	1	0	0	0	0	1	0	0	0	18268	1261	44	3	810	3	ZNF765	19	53911608	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	148874	53911608	5217375	1550	38598											
LILRB3	11025	broad.mit.edu	37	chr19	54745777	54745777	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagagaaagaggcaccgtGttaaatggggctcccacctc	13	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54745777	A	A	54745777	1	1	21	0	1	0	0	0	0	0	0	0	8864	1392	48	4		4	LILRB3	19	54745777	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	834169	54745777	4383206	1551	38599											
LILRA3	11026	broad.mit.edu	37	chr19	54803140	54803140	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccacggagaagatggcCcgggatgacccacgggcatg	17	12	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54803140	A	A	54803140	2	1	21	1	0	0	0	0	0	0	0	1	8858	610	22	2		2	LILRA3	19	54803140	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	57363	54803140	4325843	1552	38600											
TTYH1	57348	broad.mit.edu	37	chr19	54941975	54941975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggtcctcctccctccCtttctctttctgcagaggct	7	17	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54941975	A	A	54941975	1	1	21	0	1	0	0	0	0	0	0	0	16865	696	24	2		2	TTYH1	19	54941975	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	138835	54941975	4187008	1553	38601											
LILRA2	11027	broad.mit.edu	37	chr19	55086082	55086082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggagtcccagccccaggCtctgccctcaggaagggggt	14	14	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55086082	A	A	55086082	1	1	21	0	1	0	0	0	0	0	0	0	8857	812	28	3		3	LILRA2	19	55086082	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	144107	55086082	4042901	1554	38602											
LILRA2	11027	broad.mit.edu	37	chr19	55087569	55087569	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaccccctggagctcgtGgtctcaggtgagggccctga	15	12	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55087569	T	T	55087569	2	4	21	1	0	0	0	0	0	0	0	1	8857	1335	47	2		2	LILRA2	19	55087569	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1487	55087569	4041414	1555	38603											
KIR2DL3	3804	broad.mit.edu	37	chr19	55268524	55268524	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaccccagcacacacagGgacgtacagatgtcggggtt	13	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55268524	C	C	55268524	1	2	21	0	1	0	0	0	0	0	0	0	8388	1247	43	4		4	KIR2DL3	19	55268524	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	180955	55268524	3860459	1556	38604											
KIR2DL3	3804	broad.mit.edu	37	chr19	55278411	55278411	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacctcaggcacctatggcCtccccctgtttgttggtatc	10	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55278411	T	T	55278411	1	4	21	0	1	0	0	0	0	0	0	0	8388	696	24	4		4	KIR2DL3	19	55278411	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	9887	55278411	3850572	1557	38605											
PTPRH	5794	broad.mit.edu	37	chr19	55715354	55715354	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccatcggggacctcccAgctcagggagatggagctgg	16	11	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55715354	T	T	55715354	3	4	21	1	0	0	0	0	1	0	0	0	12911	188	7	5	2729	5	PTPRH	19	55715354	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	436943	55715354	3413629	1558	38606											
NLRP11	204801	broad.mit.edu	37	chr19	56320398	56320398	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaatgtttcatgtatccCaccgagtaccacttgaagct	6	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56320398	T	T	56320398	2	4	21	1	0	0	0	0	0	0	0	1	10568	581	21	4		4	NLRP11	19	56320398	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	605044	56320398	2808585	1559	38607											
NLRP4	147945	broad.mit.edu	37	chr19	56382348	56382348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaacatccggactgctGcctggattcactgtggtagg	12	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56382348	T	T	56382348	3	4	21	1	0	0	0	0	1	0	0	0	10574	1319	46	3	2532	3	NLRP4	19	56382348	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	61950	56382348	2746635	1560	38608											
NLRP5	126206	broad.mit.edu	37	chr19	56539670	56539670	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctggacgccttccactgtCttttcgagactcaagacaaa	7	14	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56539670	G	G	56539670	3	3	21	1	0	0	0	0	1	0	0	0	10575	913	32	4	2097	4	NLRP5	19	56539670	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	157322	56539670	2589313	1561	38609											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701607	56701607	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttaaatgatttattgcaCacgtcacatgcaaagggcgg	9	8	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701607	A	A	56701607	2	1	21	1	0	0	0	0	0	0	0	1	18368	465	17	3		3	ZSCAN5B	19	56701607	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	161937	56701607	2427376	1562	38610											
ZNF582	147948	broad.mit.edu	37	chr19	56901655	56901655	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccctcaaaaatgaccaacCaatcataagactgaaaagca	4	12	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56901655	T	T	56901655	1	4	21	0	1	0	0	0	0	0	0	0	18141	609	21	4		4	ZNF582	19	56901655	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	200048	56901655	2227328	1563	38611											
ZNF71	58491	broad.mit.edu	37	chr19	57132765	57132765	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggggtcctggctcagaagGagtgtgggaaccaggcagct	17	9	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57132765	C	C	57132765	3	2	21	1	0	0	0	0	1	0	0	0	18242	1174	41	4	112	4	ZNF71	19	57132765	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	231110	57132765	1996218	1564	38612											
ZNF71	58491	broad.mit.edu	37	chr19	57133628	57133628	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccacaccggcgagaagCcctacgtgtgcggcgagtgc	15	13	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57133628	T	T	57133628	3	4	21	1	0	0	0	0	1	0	0	0	18242	739	26	4	975	4	ZNF71	19	57133628	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	863	57133628	1995355	1565	38613											
PEG3	5178	broad.mit.edu	37	chr19	57326145	57326145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcatcgaatggccgacCcagcaagagcaggattcctc	11	12	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57326145	A	A	57326145	3	1	21	1	0	0	0	0	1	0	0	0	11814	623	22	2	1105	2	PEG3	19	57326145	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	192517	57326145	1802838	1566	38614											
PEG3	5178	broad.mit.edu	37	chr19	57327947	57327947	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgtacattttctctttaccAtacattttctgaaactcatt	2	10	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57327947	G	G	57327947	2	3	21	1	0	0	0	0	0	0	0	1	11814	224	8	5		5	PEG3	19	57327947	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	1802	57327947	1801036	1567	38615											
DUXA	503835	broad.mit.edu	37	chr19	57678938	57678938	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatttacataaatctctaGttccacccttagtaattgta	3	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57678938	T	T	57678938	1	4	21	0	1	0	0	0	0	0	0	0	4874	1044	36	3		3	DUXA	19	57678938	5'Flank	SNP	G	TCGA-05-4424-01A-22D-1855-08	350991	57678938	1450045	1568	38616											
ZNF304	57343	broad.mit.edu	37	chr19	57862888	57862888	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgtccttgtctcccccaGaagcagccgccttagtcttg	8	15	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57862888	C	C	57862888	1	2	21	0	1	0	0	0	0	0	0	0	17959	957	33	4		4	ZNF304	19	57862888	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	183950	57862888	1266095	1569	38617											
ZNF548	147694	broad.mit.edu	37	chr19	57908264	57908264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcttggtttgagaatatGggcccagggtggtaggggag	19	4	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57908264	T	T	57908264	1	4	21	0	1	0	0	0	0	0	0	0	18107	1363	47	2		2	ZNF548	19	57908264	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	45376	57908264	1220719	1570	38618											
ZNF549	256051	broad.mit.edu	37	chr19	58046692	58046692	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggactctgctcttccccTttttccaggagtttcctgtc	8	14	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58046692	C	C	58046692	1	2	21	0	1	0	0	0	0	0	0	0	18108	1624	56	5		5	ZNF549	19	58046692	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	138428	58046692	1082291	1571	38619											
ZSCAN4	201516	broad.mit.edu	37	chr19	58187554	58187554	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catatttcagtgtgaaccatCcgagaataatcttggatcag	8	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58187554	T	T	58187554	3	4	21	1	0	0	0	0	1	0	0	0	18366	855	30	4	43	4	ZSCAN4	19	58187554	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	140862	58187554	941429	1572	38620											
ZNF587	84914	broad.mit.edu	37	chr19	58367546	58367546	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcttcttagtgaggctcaGaggtgcttgtaccgtgatgt	13	7	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58367546	C	C	58367546	3	2	21	1	0	0	0	0	1	0	0	0	18147	933	33	4	114	4	ZNF587	19	58367546	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	179992	58367546	761437	1573	38621											
ZNF587	84914	broad.mit.edu	37	chr19	58369964	58369964	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgttggtgtggatcaaaaGatgaggaggcaccttgtaag	15	4	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58369964	C	C	58369964	3	2	21	1	0	0	0	0	1	0	0	0	18147	942	33	4	194	4	ZNF587	19	58369964	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2418	58369964	759019	1574	38622											
ZSCAN1	284312	broad.mit.edu	37	chr19	58563849	58563849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgaacagtcctgtgcttgCcattctaggcgtctgagctg	12	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58563849	A	A	58563849	1	1	21	0	1	0	0	0	0	0	0	0	18355	754	26	3		3	ZSCAN1	19	58563849	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	193885	58563849	565134	1575	38623											
A1BG	1	broad.mit.edu	37	chr19	58864328	58864328	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggagcttgctcagctgGgtccatcctgtggacaagcc	12	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58864328	T	T	58864328	2	4	21	1	0	0	0	0	0	0	0	1	1	1219	43	2		2	A1BG	19	58864328	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	300479	58864328	264655	1576	38624											
PDYN	5173	broad.mit.edu	37	chr20	1961039	1961039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcaccaccttgaactggCgccggagaaaaccgccatag	11	13	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1961039	A	A	1961039	3	1	21	1	0	0	0	0	1	0	0	0	11793	768	27	3	73	3	PDYN	20	1961039	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08		1961039	61064481	1577	38625											
TGM3	7053	broad.mit.edu	37	chr20	2291164	2291164	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcaagtttgattagggaaAgtccatgggctgtggaaagg	15	5	1	1	rs147528838	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2291164	T	T	2291164	1	4	21	0	1	0	0	0	0	0	0	0	15954	87	3	5		5	TGM3	20	2291164	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	330125	2291164	60734356	1578	38626											
NOP56	10528	broad.mit.edu	37	chr20	2635347	2635347	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggtgcccgtgggtgcggGagctagctcagagccccttg	17	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2635347	A	A	2635347	1	1	21	0	1	0	0	0	0	0	0	0	10634	1189	41	4		4	NOP56	20	2635347	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	344183	2635347	60390173	1579	38627											
VPS16	64601	broad.mit.edu	37	chr20	2841893	2841893	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagctatgtgagttcaactGcaacatccgggcacctccaa	9	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2841893	A	A	2841893	3	1	21	1	0	0	0	0	1	0	0	0	17320	1319	46	4	806	4	VPS16	20	2841893	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	206546	2841893	60183627	1580	38628											
ADAM33	80332	broad.mit.edu	37	chr20	3652837	3652837	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggacatgcgccatcccagCagtagccactgcccctggca	11	16	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3652837	G	G	3652837	3	3	21	1	0	0	0	0	1	0	0	0	250	710	25	4	936	4	ADAM33	20	3652837	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	810944	3652837	59372683	1581	38629											
CDC25B	994	broad.mit.edu	37	chr20	3781942	3781942	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggaagtggaggagctcagCcccctggccctaggtcgctt	14	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3781942	T	T	3781942	2	4	21	1	0	0	0	0	0	0	0	1	3093	738	26	4		4	CDC25B	20	3781942	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	129105	3781942	59243578	1582	38630											
PLCB4	5332	broad.mit.edu	37	chr20	9352970	9352970	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgatgaaattgagcccacAgcattttcttatgaaaagtt	7	6	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9352970	T	T	9352970	2	4	21	1	0	0	0	0	0	0	0	1	12125	175	7	5		5	PLCB4	20	9352970	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	5571028	9352970	53672550	1583	38631											
PLCB4	5332	broad.mit.edu	37	chr20	9368109	9368109	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaacttcactatatccctaGatgtgttgaacttgactgct	7	9	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9368109	T	T	9368109	5	4	21	1	0	0	0	0	0	0	1	0	12125	956	33	3	1110	3	PLCB4	20	9368109	Splice_Site	SNP	G	TCGA-05-4424-01A-22D-1855-08	15139	9368109	53657411	1584	38632											
PAK7	57144	broad.mit.edu	37	chr20	9546931	9546931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gactgcttgaggaatagcccGatttgctttgactttgaggt	12	7	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9546931	A	A	9546931	3	1	21	1	0	0	0	0	1	0	0	0	11499	1059	37	4	1092	4	PAK7	20	9546931	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	178822	9546931	53478589	1585	38633											
SNAP25	6616	broad.mit.edu	37	chr20	10286857	10286857	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggttaagtgtgcccaccCgtgttctcctccaaatgctg	10	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10286857	A	A	10286857	1	1	21	0	1	0	0	0	0	0	0	0	14944	667	23	1		1	SNAP25	20	10286857	3'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	739926	10286857	52738663	1586	38634											
SEL1L2	80343	broad.mit.edu	37	chr20	13830992	13830992	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagaatagccctacccAtcagattctgtaggggtaag	12	8	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13830992	G	G	13830992	1	3	21	0	1	0	0	0	0	0	0	0	14124	232	8	5		5	SEL1L2	20	13830992	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	3544135	13830992	49194528	1587	38635											
KIF16B	55614	broad.mit.edu	37	chr20	16316589	16316589	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctctgcatactttaacttCaatgttttatgcatttctcg	4	10	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16316589	T	T	16316589	2	4	21	1	0	0	0	0	0	0	0	1	8348	825	29	4		4	KIF16B	20	16316589	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	2485597	16316589	46708931	1588	38636											
C20orf26	26074	broad.mit.edu	37	chr20	20234278	20234278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtccagtcccactgtttGgcctggacgcacctaccaac	9	15	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20234278	T	T	20234278	1	4	21	0	1	0	0	0	0	0	0	0	2128	1363	47	2		2	C20orf26	20	20234278	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3917689	20234278	42791242	1589	38637											
CD93	22918	broad.mit.edu	37	chr20	23065301	23065301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggtgggtgtagccttgGgggtgccctcggggcccctt	18	10	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23065301	T	T	23065301	3	4	21	1	0	0	0	0	1	0	0	0	3077	1232	43	2	437	2	CD93	20	23065301	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2831023	23065301	39960219	1590	38638											
TM9SF4	9777	broad.mit.edu	37	chr20	30753088	30753088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgtcttctttctgctcGtggccgcagctggacatcgt	10	14	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30753088	T	T	30753088	1	4	21	0	1	0	0	0	0	0	0	0	16103	1160	40	3		3	TM9SF4	20	30753088	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	7687787	30753088	32272432	1591	38639											
C20orf186	149954	broad.mit.edu	37	chr20	31671171	31671171	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgcattgaattcccccgAggtgttggtgatattcccta	10	10	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31671171	T	T	31671171	5	4	21	1	0	0	0	0	0	0	1	0	2120	318	11	5	178	5	C20orf186	20	31671171	Splice_Site	SNP	A	TCGA-05-4424-01A-22D-1855-08	918083	31671171	31354349	1592	38640											
PXMP4	11264	broad.mit.edu	37	chr20	32298426	32298426	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaggccgccaggaatgCgtgtgctgggtaggtcttgc	18	8	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32298426	T	T	32298426	3	4	21	1	0	0	0	0	1	0	0	0	12959	768	27	4	336	4	PXMP4	20	32298426	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	627255	32298426	30727094	1593	38641											
C20orf24	55969	broad.mit.edu	37	chr20	35238192	35238192	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcatgaggtgtcactcacAggaggggaccccactgattg	12	10	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35238192	G	G	35238192	1	3	21	0	1	0	0	0	0	0	0	0	2127	203	7	5		5	C20orf24	20	35238192	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2939766	35238192	27787328	1594	38642											
SLC32A1	140679	broad.mit.edu	37	chr20	37357066	37357066	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatgtgccgcacttcgcGctgctcatgggcctcaccgg	11	14	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37357066	T	T	37357066	2	4	21	1	0	0	0	0	0	0	0	1	14679	1074	38	3		3	SLC32A1	20	37357066	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2118874	37357066	25668454	1595	38643											
FAM83D	81610	broad.mit.edu	37	chr20	37580398	37580398	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accctgggcaacctgctgcgGatgcggctggctaggctgtc	15	13	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37580398	C	C	37580398	2	2	21	1	0	0	0	0	0	0	0	1	5689	1161	41	4		4	FAM83D	20	37580398	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	223332	37580398	25445122	1596	38644											
JPH2	57158	broad.mit.edu	37	chr20	42744380	42744380	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttggcccccgccttggtCagccctcgagcctcagtctt	9	17	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42744380	G	G	42744380	2	3	21	1	0	0	0	0	0	0	0	1	8031	813	29	4		4	JPH2	20	42744380	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	5163982	42744380	20281140	1597	38645											
JPH2	57158	broad.mit.edu	37	chr20	42788516	42788516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggagcgttcgctcacgCcgaagcccgagcgtttgtcg	13	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42788516	A	A	42788516	3	1	21	1	0	0	0	0	1	0	0	0	8031	739	26	3	1195	3	JPH2	20	42788516	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	44136	42788516	20237004	1598	38646											
MATN4	8785	broad.mit.edu	37	chr20	43927056	43927056	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccagagggaactcggtgcGcacgcggctcgagaactgca	14	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43927056	A	A	43927056	3	1	21	1	0	0	0	0	1	0	0	0	9428	1087	38	4	581	4	MATN4	20	43927056	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1138540	43927056	19098464	1599	38647											
EYA2	2139	broad.mit.edu	37	chr20	45811774	45811774	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcatcatccttcatgtGgggatgataacagggctcac	11	10	4	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45811774	A	A	45811774	1	1	21	0	1	0	0	0	0	0	0	0	5372	1363	47	4		4	EYA2	20	45811774	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1884718	45811774	17213746	1600	38648											
PREX1	57580	broad.mit.edu	37	chr20	47364366	47364366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacattctcctccgtgaGgcccttctccactgagtcgg	9	15	2	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47364366	T	T	47364366	3	4	21	1	0	0	0	0	1	0	0	0	12582	1000	35	2	4864	2	PREX1	20	47364366	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1552592	47364366	15661154	1601	38649											
ARFGEF2	10564	broad.mit.edu	37	chr20	47626980	47626980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctactaatgtcccacctGcaagtctagaagagtgtcac	7	13	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47626980	T	T	47626980	1	4	21	0	1	0	0	0	0	0	0	0	855	1334	46	3		3	ARFGEF2	20	47626980	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	262614	47626980	15398540	1602	38650											
ZNFX1	57169	broad.mit.edu	37	chr20	47888037	47888037	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggttgccatttctccaCctggtgtcattctcctggtc	8	14	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47888037	T	T	47888037	2	4	21	1	0	0	0	0	0	0	0	1	18334	506	18	4		4	ZNFX1	20	47888037	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	261057	47888037	15137483	1603	38651											
SLC9A8	23315	broad.mit.edu	37	chr20	48471964	48471964	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaatctccccttccctctGtctcttacagttttgcgttt	5	14	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48471964	A	A	48471964	1	1	21	0	1	0	0	0	0	0	0	0	14834	1392	48	4		4	SLC9A8	20	48471964	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	583927	48471964	14553556	1604	38652											
FAM65C	140876	broad.mit.edu	37	chr20	49227544	49227545	+	Intron	INS	-	GGCTTAGTGCCGGGCC	GGCTTAGTGCCGGGCC													ggtcctaactcagagaatggINSggcccctcaccatccctgag					rs144167038	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGCTTAGTGCCGGGCC	49227545	GGCTTAGTGCCGGGCC	GGCTTAGTGCCGGGCC	49227544	6	5	21	0	1	1	1	0	0	0	0	0	5652	1247	43	0		0	FAM65C	20	49227544	Intron	INS	-	TCGA-05-4424-01A-22D-1855-08	755580	49227544	13797976	1605	38653											
ZNF217	7764	broad.mit.edu	37	chr20	52193386	52193386	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccgccttggttctacagatGaggttatttgcctgagtttc	10	9	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52193386	C	C	52193386	2	2	21	1	0	0	0	0	0	0	0	1	17898	1277	45	4		4	ZNF217	20	52193386	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	2965842	52193386	10832134	1606	38654											
SPO11	23626	broad.mit.edu	37	chr20	55909776	55909776	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaacatattcgtgaagcaGgtttcaaatatgtctattat	6	5	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55909776	T	T	55909776	1	4	21	0	1	0	0	0	0	0	0	0	15195	1015	35	2		2	SPO11	20	55909776	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	3716390	55909776	7115744	1607	38655											
C20orf85	128602	broad.mit.edu	37	chr20	56735845	56735845	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaggtgcttttgcacgAgagctgtgctggcccaagca	13	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56735845	T	T	56735845	2	4	21	1	0	0	0	0	0	0	0	1	2142	291	11	5		5	C20orf85	20	56735845	Silent	SNP	A	TCGA-05-4424-01A-22D-1855-08	826069	56735845	6289675	1608	38656											
ZNF831	128611	broad.mit.edu	37	chr20	57767923	57767923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggctgaagatgttctccCaggagaagtggcaggtgtac	15	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57767923	A	A	57767923	3	1	21	1	0	0	0	0	1	0	0	0	18314	595	21	2	1851	2	ZNF831	20	57767923	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1032078	57767923	5257597	1609	38657											
PHACTR3	116154	broad.mit.edu	37	chr20	58348258	58348258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgtcctttccgctcatGgtccccagtctcagcaaaac	9	15	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58348258	T	T	58348258	1	4	21	0	1	0	0	0	0	0	0	0	11906	1363	47	2		2	PHACTR3	20	58348258	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	580335	58348258	4677262	1610	38658											
C20orf177	63939	broad.mit.edu	37	chr20	58519045	58519045	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgcaacattcaaagaattCttcaggaaaaaggcagagta	9	6	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58519045	G	G	58519045	3	3	21	1	0	0	0	0	1	0	0	0	2118	913	32	4	49	4	C20orf177	20	58519045	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	170787	58519045	4506475	1611	38659											
CDH26	60437	broad.mit.edu	37	chr20	58559697	58559697	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaattctttctagggcAacctatttttcagatgttag	6	6	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58559697	T	T	58559697	3	4	21	1	0	0	0	0	1	0	0	0	3140	130	5	5	567	5	CDH26	20	58559697	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	40652	58559697	4465823	1612	38660											
CDH4	1002	broad.mit.edu	37	chr20	60499639	60499639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccccgagaggccagcagGcatccagagggtcacccaga	13	14	1	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60499639	T	T	60499639	1	4	21	0	1	0	0	0	0	0	0	0	3142	1218	42	3		3	CDH4	20	60499639	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1939942	60499639	2525881	1613	38661											
LAMA5	3911	broad.mit.edu	37	chr20	60907577	60907577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtggggcagccccgggCgtgcccttactccagcccca	14	17	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60907577	A	A	60907577	1	1	21	0	1	0	0	0	0	0	0	0	8681	783	27	3		3	LAMA5	20	60907577	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	407938	60907577	2117943	1614	38662											
DIDO1	11083	broad.mit.edu	37	chr20	61513083	61513083	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcaggagccctttccacctCgtggcgccgccctcgctcca	9	19	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61513083	A	A	61513083	4	1	21	1	0	0	0	0	0	1	0	0	4562	893	31	3	2501	3	DIDO1	20	61513083	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	605506	61513083	1512437	1615	38663											
SLC17A9	63910	broad.mit.edu	37	chr20	61597757	61597757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagggagcaggcctgagCgtgtcccagcccctcccgtg	15	16	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61597757	A	A	61597757	1	1	21	0	1	0	0	0	0	0	0	0	14537	783	27	3		3	SLC17A9	20	61597757	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	84674	61597757	1427763	1616	38664											
EEF1A2	1917	broad.mit.edu	37	chr20	62129204	62129204	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctgtggggccagtggtGgtggggagaccggtgatggg	22	5	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62129204	T	T	62129204	1	4	21	0	1	0	0	0	0	0	0	0	4964	1363	47	2		2	EEF1A2	20	62129204	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	531447	62129204	896316	1617	38665											
OPRL1	4987	broad.mit.edu	37	chr20	62729793	62729793	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcctgctctcgggctccCgagagaaggaccggaacctg	13	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62729793	T	T	62729793	4	4	21	1	0	0	0	0	0	1	0	0	10980	644	23	4	764	4	OPRL1	20	62729793	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	600589	62729793	295727	1618	38666											
TPTE	7179	broad.mit.edu	37	chr21	10914519	10914519	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcaccaattaacatcatgGattaaaatgagaaaaaatta	4	6	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10914519	T	T	10914519	1	4	21	0	1	0	0	0	0	0	0	0	16554	1189	41	3		3	TPTE	21	10914519	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08		10914519	37215376	1619	38667											
NCAM2	4685	broad.mit.edu	37	chr21	22910112	22910112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagtaacttaaaggttaaGgtacgtctccttaaatacct	6	8	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22910112	T	T	22910112	1	4	21	0	1	0	0	0	0	0	0	0	10298	1015	35	2		2	NCAM2	21	22910112	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	11995593	22910112	25219783	1620	38668											
N6AMT1	29104	broad.mit.edu	37	chr21	30260256	30260256	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccttttaagagcatagcAtcatctttgatcacagtgac	6	9	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30260256	T	T	30260256	1	4	21	0	1	0	0	0	0	0	0	0	10208	232	8	5		5	N6AMT1	21	30260256	5'Flank	SNP	A	TCGA-05-4424-01A-22D-1855-08	7350144	30260256	17869639	1621	38669											
RNF160	26046	broad.mit.edu	37	chr21	30315514	30315514	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcttctgtgctgcttcagtCctctaaagacattataagtg	8	9	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30315514	A	A	30315514	1	1	21	0	1	0	0	0	0	0	0	0	13566	870	30	3		3	RNF160	21	30315514	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	55258	30315514	17814381	1622	38670											
CLDN14	23562	broad.mit.edu	37	chr21	37859218	37859218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagtgagtgtggtcagcaCttcacagtcattagccagtg	12	8	3	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37859218	A	A	37859218	1	1	21	0	1	0	0	0	0	0	0	0	3506	580	20	3		3	CLDN14	21	37859218	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	7543704	37859218	10270677	1623	38671											
DSCAM	1826	broad.mit.edu	37	chr21	41450679	41450679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccgcactgttgcacaccCgcatctgcagctcataccag	8	17	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41450679	A	A	41450679	3	1	21	1	0	0	0	0	1	0	0	0	4808	652	23	1	1424	1	DSCAM	21	41450679	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	3591461	41450679	6679216	1624	38672											
DSCAM	1826	broad.mit.edu	37	chr21	41719760	41719760	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttgaggatttcaccattGcggtaccaggagagttcctg	14	8	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41719760	T	T	41719760	2	4	21	1	0	0	0	0	0	0	0	1	4808	1306	46	3		3	DSCAM	21	41719760	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	269081	41719760	6410135	1625	38673											
FAM3B	54097	broad.mit.edu	37	chr21	42718992	42718992	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgctccaaaatccctGctcttcatggtgacctatga	8	12	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42718992	T	T	42718992	2	4	21	1	0	0	0	0	0	0	0	1	5608	1306	46	3		3	FAM3B	21	42718992	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	999232	42718992	5410903	1626	38674											
PRDM15	63977	broad.mit.edu	37	chr21	43287255	43287258	+	Intron	DEL	CTCA	-	-													agcccagaaagcccagaaacCtcactgactatctgagtttt					rs3833356		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43287258	-	-	43287255	6	5	21	0	1	1	0	1	0	0	0	0	12562	696	24	0		0	PRDM15	21	43287255	Intron	DEL	CTCA	TCGA-05-4424-01A-22D-1855-08	568263	43287255	4842640	1627	38675											
UBASH3A	53347	broad.mit.edu	37	chr21	43838595	43838595	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacatctttgtggaccccaCgcagcaggacgaagccagcg	11	14	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43838595	T	T	43838595	3	4	21	1	0	0	0	0	1	0	0	0	16965	536	19	4	949	4	UBASH3A	21	43838595	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	551340	43838595	4291300	1628	38676											
KRTAP10-3	386682	broad.mit.edu	37	chr21	45978250	45978250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgggcttgcagcagacagGcttgcagcagacgggcacac	15	11	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45978250	T	T	45978250	3	4	21	1	0	0	0	0	1	0	0	0	8581	1203	42	3	320	3	KRTAP10-3	21	45978250	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2139655	45978250	2151645	1629	38677											
KRTAP12-2	353323	broad.mit.edu	37	chr21	46086610	46086610	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttgaagctcatgggcacaCacacagaagactggcagctc	10	12	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46086610	G	G	46086610	3	3	21	1	0	0	0	0	1	0	0	0	8590	478	17	4	250	4	KRTAP12-2	21	46086610	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	108360	46086610	2043285	1630	38678											
PCNT	5116	broad.mit.edu	37	chr21	47773118	47773118	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtccgaactggagcaactGaggatttattttgaaaagaa	11	5	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47773118	A	A	47773118	2	1	21	1	0	0	0	0	0	0	0	1	11684	1277	45	4		4	PCNT	21	47773118	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1686508	47773118	356777	1631	38679											
PCNT	5116	broad.mit.edu	37	chr21	47819700	47819700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaaaacatcgtgaaagGgctggaacaggtaaagcgtc	12	7	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47819700	T	T	47819700	3	4	21	1	0	0	0	0	1	0	0	0	11684	1232	43	2	4879	2	PCNT	21	47819700	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	46582	47819700	310195	1632	38680											
HIRA	7290	broad.mit.edu	37	chr22	19376025	19376025	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accaggaaatatccatgatgGatttgtcaaacagttcatgg	9	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19376025	C	C	19376025	3	2	21	1	0	0	0	0	1	0	0	0	7187	1174	41	4	2128	4	HIRA	22	19376025	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08		19376025	31928541	1633	38681											
MAPK1	5594	broad.mit.edu	37	chr22	22142807	22142807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccactcctgatgtttacCtttcttatgtttttacacaa	3	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22142807	A	A	22142807	1	1	21	0	1	0	0	0	0	0	0	0	9363	696	24	2		2	MAPK1	22	22142807	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2766782	22142807	29161759	1634	38682											
UPB1	51733	broad.mit.edu	37	chr22	24916322	24916322	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtctgcctggaaagtcGgcaacctggttcctcttggt	12	11	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24916322	A	A	24916322	1	1	21	0	1	0	0	0	0	0	0	0	17128	1131	39	4		4	UPB1	22	24916322	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2773515	24916322	26388244	1635	38683											
CRYBB3	1417	broad.mit.edu	37	chr22	25597356	25597356	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaagccagaggtgttcCtggggagatggcggaacagc	17	7	0	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25597356	T	T	25597356	1	4	21	0	1	0	0	0	0	0	0	0	3944	696	24	4		4	CRYBB3	22	25597356	5'UTR	SNP	C	TCGA-05-4424-01A-22D-1855-08	681034	25597356	25707210	1636	38684											
CRYBB2	1415	broad.mit.edu	37	chr22	25623959	25623959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccatcaaagtggtgagcCccctgccatcaccctactcc	8	18	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25623959	A	A	25623959	1	1	21	0	1	0	0	0	0	0	0	0	3943	638	22	2		2	CRYBB2	22	25623959	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	26603	25623959	25680607	1637	38685											
MYO18B	84700	broad.mit.edu	37	chr22	26400768	26400768	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtccctggccacagatacTatgaggactccttctcgaca	8	14	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26400768	C	C	26400768	2	2	21	1	0	0	0	0	0	0	0	1	10160	1509	53	5		5	MYO18B	22	26400768	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	776809	26400768	24903798	1638	38686											
C22orf28	51493	broad.mit.edu	37	chr22	32792114	32792114	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccaggcatagttcccagCagctgccattcccttcagat	8	15	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32792114	T	T	32792114	3	4	21	1	0	0	0	0	1	0	0	0	2162	710	25	4	600	4	C22orf28	22	32792114	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	6391346	32792114	18512452	1639	38687											
CACNG2	10369	broad.mit.edu	37	chr22	36962329	36962329	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccatctctctctgccagGccctcgtggcccctgagcac	8	20	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36962329	C	C	36962329	1	2	21	0	1	0	0	0	0	0	0	0	2583	1218	42	4		4	CACNG2	22	36962329	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	4170215	36962329	14342237	1640	38688											
ELFN2	114794	broad.mit.edu	37	chr22	37770693	37770693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttgatggctggccctgcCgacgcatccgtggtggacga	15	12	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37770693	A	A	37770693	2	1	21	1	0	0	0	0	0	0	0	1	5100	639	23	1		1	ELFN2	22	37770693	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	808364	37770693	13533873	1641	38689											
SCUBE1	80274	broad.mit.edu	37	chr22	43654159	43654160	+	Intron	DNP	GG	TT	TT													ggcagggtgctggccctgctGgtgcacgcatggggggtcgg							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43654160	TT	TT	43654159	1	4	21	0	1	0	0	0	0	0	0	0	14057	1363	47	2		2	SCUBE1	22	43654159	Intron	DNP	GG	TCGA-05-4424-01A-22D-1855-08	5883466	43654159	7650407	1642	38690											
PNPLA5	150379	broad.mit.edu	37	chr22	44280245	44280245	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaagagaagccctggcAtggccctgcccacctgaagt	12	14	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44280245	T	T	44280245	1	4	21	0	1	0	0	0	0	0	0	0	12263	232	8	5		5	PNPLA5	22	44280245	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	626086	44280245	7024321	1643	38691											
PARVB	29780	broad.mit.edu	37	chr22	44547345	44547345	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccattcatggctcctgtgtCtcttttattcttggcagtct	8	11	4	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44547345	T	T	44547345	1	4	21	0	1	0	0	0	0	0	0	0	11563	928	32	4		4	PARVB	22	44547345	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	267100	44547345	6757221	1644	38692											
PHF21B	112885	broad.mit.edu	37	chr22	45312564	45312564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacacacaggagtgcagGggaggggccgccctggctcg	18	12	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45312564	T	T	45312564	1	4	21	0	1	0	0	0	0	0	0	0	11929	1247	43	2		2	PHF21B	22	45312564	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	765219	45312564	5992002	1645	38693											
CELSR1	9620	broad.mit.edu	37	chr22	46807707	46807707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgttttctccaccagtgccCtcagcaggcgcacctgtcac	9	17	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46807707	A	A	46807707	1	1	21	0	1	0	0	0	0	0	0	0	3251	696	24	2		2	CELSR1	22	46807707	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1495143	46807707	4496859	1646	38694											
MXRA5	25878	broad.mit.edu	37	chrX	3235434	3235434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaacaaacaagttcccGtggaggaactgcgaggggcg	16	8	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3235434	T	T	3235434	3	4	21	1	0	0	0	0	1	0	0	0	10097	1136	40	3	2206	3	MXRA5	23	3235434	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08		3235434	152035126	1647	38695											
ARHGAP6	395	broad.mit.edu	37	chrX	11315279	11315279	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagctagtaaaatgtaagGattaggtaagatgttattta	9	4	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11315279	T	T	11315279	1	4	21	0	1	0	0	0	0	0	0	0	889	1189	41	3		3	ARHGAP6	23	11315279	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	8079845	11315279	143955281	1648	38696											
EGFL6	25975	broad.mit.edu	37	chrX	13641932	13641932	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttatgaaatatgttctttCtttttagcagatttaaatat	6	3	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13641932	G	G	13641932	1	3	21	0	1	0	0	0	0	0	0	0	5003	928	32	4		4	EGFL6	23	13641932	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2326653	13641932	141628628	1649	38697											
ASB9	140462	broad.mit.edu	37	chrX	15266879	15266879	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagcaccttctctctccaaGaagagctgggccaaggggct	12	12	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15266879	A	A	15266879	2	1	21	1	0	0	0	0	0	0	0	1	1034	933	33	4		4	ASB9	23	15266879	Silent	SNP	G	TCGA-05-4424-01A-22D-1855-08	1624947	15266879	140003681	1650	38698											
PDHA1	5160	broad.mit.edu	37	chrX	19375768	19375768	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctaccggttctgttttAggggcccatcctgatggagc	12	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19375768	T	T	19375768	5	4	21	1	0	0	0	0	0	0	1	0	11758	434	15	5	1003	5	PDHA1	23	19375768	Splice_Site	SNP	A	TCGA-05-4424-01A-22D-1855-08	4108889	19375768	135894792	1651	38699											
RPS6KA3	6197	broad.mit.edu	37	chrX	20222059	20222059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcagaatgtaaataacatGccaaggagtcccatgagctc	8	9	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20222059	T	T	20222059	1	4	21	0	1	0	0	0	0	0	0	0	13763	1334	46	3		3	RPS6KA3	23	20222059	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	846291	20222059	135048501	1652	38700											
PHEX	5251	broad.mit.edu	37	chrX	22065243	22065243	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggttcgcttgtgatggctGgataagcaataatccaattc	10	9	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22065243	A	A	22065243	4	1	21	1	0	0	0	0	0	1	0	0	11914	1357	47	4	273	4	PHEX	23	22065243	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1843184	22065243	133205317	1653	38701											
PHEX	5251	broad.mit.edu	37	chrX	22095522	22095522	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggaattttgtcttgagaaGatgcacttaaattctagtgt	10	4	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22095522	T	T	22095522	1	4	21	0	1	0	0	0	0	0	0	0	11914	957	33	3		3	PHEX	23	22095522	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	30279	22095522	133175038	1654	38702											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997831	27997831	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgcggttgtcaaacgagtCcgtatagttcaagttgtctt	10	8	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27997831	A	A	27997831	3	1	21	1	0	0	0	0	1	0	0	0	4310	855	30	3	185	3	DCAF8L1	23	27997831	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5902309	27997831	127272729	1655	38703											
CXorf21	80231	broad.mit.edu	37	chrX	30577698	30577698	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaggtctccagattcttctCtctagacacttgaagactga	8	10	4	6			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30577698	A	A	30577698	4	1	21	1	0	0	0	0	0	1	0	0	4134	922	32	3	134	3	CXorf21	23	30577698	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2579867	30577698	124692862	1656	38704											
FTHL17	53940	broad.mit.edu	37	chrX	31089806	31089806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagccttggcactctgGcttcctgatatcgtgaaggc	10	14	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31089806	T	T	31089806	3	4	21	1	0	0	0	0	1	0	0	0	6143	1203	42	3	290	3	FTHL17	23	31089806	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	512108	31089806	124180754	1657	38705											
FAM47C	442444	broad.mit.edu	37	chrX	37027667	37027667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctccgcccagagacccCcaagaatggagtgtctcctc	8	17	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37027667	A	A	37027667	3	1	21	1	0	0	0	0	1	0	0	0	5622	623	22	2	1186	2	FAM47C	23	37027667	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	5937861	37027667	118242893	1658	38706											
DUSP21	63904	broad.mit.edu	37	chrX	44703540	44703540	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccgccattgtcaatgcCtcggtggaagtggtcaacgt	11	11	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44703540	A	A	44703540	2	1	21	1	0	0	0	0	0	0	0	1	4860	668	24	2		2	DUSP21	23	44703540	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	7675873	44703540	110567020	1659	38707											
PHF16	9767	broad.mit.edu	37	chrX	46845161	46845161	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatgtataggatcaagtcaAaaattccaaatgaacacaag	6	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46845161	G	G	46845161	3	3	21	1	0	0	0	0	1	0	0	0	11922	15	1	5	100	5	PHF16	23	46845161	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	2141621	46845161	108425399	1660	38708											
RBM10	8241	broad.mit.edu	37	chrX	47034444	47034444	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccggggcttcgccttcgtcGagtttagtcacttgcaggac	13	12	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47034444	T	T	47034444	4	4	21	1	0	0	0	0	0	1	0	0	13219	1059	37	3	547	3	RBM10	23	47034444	Nonsense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	189283	47034444	108236116	1661	38709											
RIBC1	158787	broad.mit.edu	37	chrX	53453249	53453249	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataacataaaacagtcaacaGataccaaggaagcagcagcc	7	10	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53453249	C	C	53453249	3	2	21	1	0	0	0	0	1	0	0	0	13461	942	33	4	27	4	RIBC1	23	53453249	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	6418805	53453249	101817311	1662	38710											
HUWE1	10075	broad.mit.edu	37	chrX	53653002	53653002	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgcaactaaagtacaagTtatgataaagaaacttacta	5	6	1	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53653002	C	C	53653002	1	2	21	0	1	0	0	0	0	0	0	0	7531	1740	60	5		5	HUWE1	23	53653002	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	199753	53653002	101617558	1663	38711											
FAM120C	54954	broad.mit.edu	37	chrX	54159204	54159204	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactaaaaagaactccataTacatattgacgagctgaccg	7	9	0	4	rs45611732	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54159204	C	C	54159204	2	2	21	1	0	0	0	0	0	0	0	1	5464	1393	49	5		5	FAM120C	23	54159204	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	506202	54159204	101111356	1664	38712											
ITIH5L	347365	broad.mit.edu	37	chrX	54823578	54823578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtagactatgtcctcagCctagatgggctagtctttgg	12	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54823578	A	A	54823578	1	1	21	0	1	0	0	0	0	0	0	0	7978	754	26	3		3	ITIH5L	23	54823578	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	664374	54823578	100446982	1665	38713											
MTMR8	55613	broad.mit.edu	37	chrX	63557210	63557210	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctagccactgagcagacttGtgctgtgcggtcccatccat	11	13	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63557210	C	C	63557210	3	2	21	1	0	0	0	0	1	0	0	0	10043	1386	48	4	1099	4	MTMR8	23	63557210	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	8733632	63557210	91713350	1666	38714											
EDA2R	60401	broad.mit.edu	37	chrX	65824404	65824404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagcaatgcacttggaCcagttcttcctgggaaagca	9	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65824404	A	A	65824404	1	1	21	0	1	0	0	0	0	0	0	0	4944	522	18	3		3	EDA2R	23	65824404	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	2267194	65824404	89446156	1667	38715											
AR	367	broad.mit.edu	37	chrX	66941637	66941637	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgggcttattgtaaacttCccctcattcctttttcctct	4	13	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66941637	T	T	66941637	1	4	21	0	1	0	0	0	0	0	0	0	838	870	30	4		4	AR	23	66941637	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1117233	66941637	88328923	1668	38716											
ATP7A	538	broad.mit.edu	37	chrX	77243647	77243647	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccattagattgagttgtctCactcttcttgaatgtggtgt	9	7	3	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77243647	T	T	77243647	1	4	21	0	1	0	0	0	0	0	0	0	1194	841	29	4		4	ATP7A	23	77243647	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	10302010	77243647	78026913	1669	38717											
BRWD3	254065	broad.mit.edu	37	chrX	79973080	79973080	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattgactcacctactaacCccattatttagttcattgac	3	11	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79973080	A	A	79973080	2	1	21	1	0	0	0	0	0	0	0	1	1535	610	22	2		2	BRWD3	23	79973080	Silent	SNP	C	TCGA-05-4424-01A-22D-1855-08	2729433	79973080	75297480	1670	38718											
POU3F4	5456	broad.mit.edu	37	chrX	82764135	82764135	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccacagggagcccgaccaGcattgacaagatcgctgcac	11	14	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82764135	C	C	82764135	3	2	21	1	0	0	0	0	1	0	0	0	12373	971	34	4	805	4	POU3F4	23	82764135	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	2791055	82764135	72506425	1671	38719											
SATL1	340562	broad.mit.edu	37	chrX	84362524	84362524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggctgactcggccccGgttcccatatgcctggttgg	14	14	0	1	rs146269642		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84362524	T	T	84362524	3	4	21	1	0	0	0	0	1	0	0	0	13967	1116	39	1	467	1	SATL1	23	84362524	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	1598389	84362524	70908036	1672	38720											
PCDH11X	27328	broad.mit.edu	37	chrX	91090850	91090850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggaggttgccattttgcCggatgaaatatttagactgg	13	5	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91090850	A	A	91090850	3	1	21	1	0	0	0	0	1	0	0	0	11602	652	23	1	349	1	PCDH11X	23	91090850	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	6728326	91090850	64179710	1673	38721											
NXF3	56000	broad.mit.edu	37	chrX	102343812	102343812	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actataatgattcccaacaaTgtcaggctcctggtgttcaa	7	10	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102343812	A	A	102343812	1	1	21	0	1	0	0	0	0	0	0	0	10880	1479	51	5		5	NXF3	23	102343812	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	11252962	102343812	52926748	1674	38722											
MCART6	401612	broad.mit.edu	37	chrX	103349841	103349841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaagttggaaacggcccCaagggcataggcctgggaat	13	9	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103349841	A	A	103349841	3	1	21	1	0	0	0	0	1	0	0	0	9464	594	21	2	827	2	MCART6	23	103349841	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	1006029	103349841	51920719	1675	38723											
TBC1D8B	54885	broad.mit.edu	37	chrX	106083826	106083826	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcaaggtaatgaaatccaAttatttatgtatatatggaa	6	3	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106083826	T	T	106083826	1	4	21	0	1	0	0	0	0	0	0	0	15748	116	4	5		5	TBC1D8B	23	106083826	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	2733985	106083826	49186734	1676	38724											
CXorf41	139212	broad.mit.edu	37	chrX	106459949	106459949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcctgggaatattggaCcaccccaaatagaagagctc	11	10	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106459949	A	A	106459949	3	1	21	1	0	0	0	0	1	0	0	0	4143	507	18	3	208	3	CXorf41	23	106459949	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	376123	106459949	48810611	1677	38725											
COL4A5	1287	broad.mit.edu	37	chrX	107849872	107849872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccccatggaaggaaaaGtattgtcttgtattttcggc	9	10	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107849872	T	T	107849872	1	4	21	0	1	0	0	0	0	0	0	0	3726	1044	36	3		3	COL4A5	23	107849872	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	1389923	107849872	47420688	1678	38726											
RGAG1	57529	broad.mit.edu	37	chrX	109694214	109694214	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgccagccttagattcTggaacattgtccccattgct	7	12	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109694214	A	A	109694214	2	1	21	1	0	0	0	0	0	0	0	1	13382	1567	55	5		5	RGAG1	23	109694214	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	1844342	109694214	45576346	1679	38727											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698882	111698882	+	Missense_Mutation	SNP	A	C	C													aacgacaaataacacagctcAccagtaagaggagaccagga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111698882	C	C	111698882	3	2	21	1	0	0	0	0	1	0	0	0	17710	159	6	5	928	5	ZCCHC16	23	111698882	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	2004668	111698882	43571678	1680	38728	212	2									
ZCCHC16	340595	broad.mit.edu	37	chrX	111698884	111698884	+	Nonsense_Mutation	SNP	C	T	T													cgacaaataacacagctcacCagtaagaggagaccaggaaa							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111698884	T	T	111698884	4	4	21	1	0	0	0	0	0	1	0	0	17710	595	21	4	930	4	ZCCHC16	23	111698884	Nonsense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	2	111698884	43571676	1681	38729	212	2									
LONRF3	79836	broad.mit.edu	37	chrX	118145781	118145781	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctctttctgacagcctTaataagaatgtgcctatttt	5	8	2	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118145781	C	C	118145781	2	2	21	1	0	0	0	0	0	0	0	1	8983	1741	61	5		5	LONRF3	23	118145781	Silent	SNP	T	TCGA-05-4424-01A-22D-1855-08	6446897	118145781	37124779	1682	38730											
ODZ1	10178	broad.mit.edu	37	chrX	123838841	123838841	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgattaagaacaaaactgAggcatgacaaaaaggactta	8	5	0	4			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123838841	C	C	123838841	1	2	21	0	1	0	0	0	0	0	0	0	10929	319	11	5		5	ODZ1	23	123838841	Intron	SNP	A	TCGA-05-4424-01A-22D-1855-08	5693060	123838841	31431719	1683	38731											
XPNPEP2	7512	broad.mit.edu	37	chrX	128881743	128881743	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacaggtgattcagtaagCccagtttccttcccaacttg	7	12	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128881743	A	A	128881743	1	1	21	0	1	0	0	0	0	0	0	0	17570	754	26	3		3	XPNPEP2	23	128881743	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	5042902	128881743	26388817	1684	38732											
AIFM1	9131	broad.mit.edu	37	chrX	129270750	129270750	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtgagcctacaaggctatCactttcatgggaagtaggaa	12	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129270750	A	A	129270750	1	1	21	0	1	0	0	0	0	0	0	0	426	841	29	3		3	AIFM1	23	129270750	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	389007	129270750	25999810	1685	38733											
CT45A5	441521	broad.mit.edu	37	chrX	134947984	134947984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgttggcttttgggagagGaggctattcctctgcattct	12	8	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134947984	T	T	134947984	3	4	21	1	0	0	0	0	1	0	0	0	4022	1174	41	3	240	3	CT45A5	23	134947984	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	5677234	134947984	20322576	1686	38734											
GPR112	139378	broad.mit.edu	37	chrX	135430790	135430790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccttccaggatcacacCtacgacctttctctctccaa	5	17	3	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135430790	A	A	135430790	3	1	21	1	0	0	0	0	1	0	0	0	6694	681	24	2	4935	2	GPR112	23	135430790	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	482806	135430790	19839770	1687	38735											
BRS3	680	broad.mit.edu	37	chrX	135572294	135572294	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgattatgtgtttctagatAcaaggcagttgtgaagccac	10	7	1	3			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135572294	G	G	135572294	3	3	21	1	0	0	0	0	1	0	0	0	1531	391	14	5	443	5	BRS3	23	135572294	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	141504	135572294	19698266	1688	38736											
GPR101	83550	broad.mit.edu	37	chrX	136113649	136113649	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacggttggtcacctgcagcAgctgcggcttgcgctgcaac	13	13	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136113649	T	T	136113649	3	4	21	1	0	0	0	0	1	0	0	0	6687	188	7	5	1344	5	GPR101	23	136113649	Missense_Mutation	SNP	A	TCGA-05-4424-01A-22D-1855-08	541355	136113649	19156911	1689	38737											
MCF2	4168	broad.mit.edu	37	chrX	138713452	138713452	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctggggtttttttgtttTgttttgttttgtttttttca	9	2	1	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138713452	G	G	138713452	1	3	21	0	1	0	0	0	0	0	0	0	9471	1827	63	5		5	MCF2	23	138713452	Intron	SNP	T	TCGA-05-4424-01A-22D-1855-08	2599803	138713452	16557108	1690	38738											
CXorf66	347487	broad.mit.edu	37	chrX	139038425	139038425	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggattaaaatgtttgggaGgcttagccaattcctgtgga	12	5	0	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139038425	A	A	139038425	3	1	21	1	0	0	0	0	1	0	0	0	4151	1000	35	4	373	4	CXorf66	23	139038425	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	324973	139038425	16232135	1691	38739											
FMR1NB	158521	broad.mit.edu	37	chrX	147090218	147090218	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcccatttattgccgctctCttttctggaggaggtaggtg	12	9	2	0			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147090218	A	A	147090218	3	1	21	1	0	0	0	0	1	0	0	0	6019	913	32	3	633	3	FMR1NB	23	147090218	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	8051793	147090218	8180342	1692	38740											
MAGEA9B	728269	broad.mit.edu	37	chrX	148664881	148664881	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcgtgggcaggagctgGgcgatggagacccacaggcc	19	10	0	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148664881	T	T	148664881	1	4	21	0	1	0	0	0	0	0	0	0	9263	1247	43	2		2	MAGEA9B	23	148664881	5'UTR	SNP	G	TCGA-05-4424-01A-22D-1855-08	1574663	148664881	6605679	1693	38741											
HSFX2	100130086	broad.mit.edu	37	chrX	148839553	148839553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcccacttcttacccatcCctctgcggacctgagtctcc	6	18	3	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148839553	A	A	148839553	1	1	21	0	1	0	0	0	0	0	0	0	7468	638	22	2		2	HSFX2	23	148839553	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	174672	148839553	6431007	1694	38742											
HSFX2	100130086	broad.mit.edu	37	chrX	148842439	148842439	+	Intron	SNP	G	A	A													ctgttttggaatcttgggcaGgtgagcactatgttctcaga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148842439	A	A	148842439	1	1	21	0	1	0	0	0	0	0	0	0	7468	1015	35	4		4	HSFX2	23	148842439	Intron	SNP	G	TCGA-05-4424-01A-22D-1855-08	2886	148842439	6428121	1695	38743	213	2									
HSFX2	100130086	broad.mit.edu	37	chrX	148842445	148842445	+	Intron	SNP	C	A	A													tggaatcttgggcaggtgagCactatgttctcagaggacga							TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148842445	A	A	148842445	1	1	21	0	1	0	0	0	0	0	0	0	7468	725	25	3		3	HSFX2	23	148842445	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	6	148842445	6428115	1696	38744	213	2									
GABRA3	2556	broad.mit.edu	37	chrX	151336822	151336822	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaattttgtcaaccttgcTgacactgttgtaggtcttgg	11	7	2	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151336822	G	G	151336822	3	3	21	1	0	0	0	0	1	0	0	0	6222	1580	55	5	125	5	GABRA3	23	151336822	Missense_Mutation	SNP	T	TCGA-05-4424-01A-22D-1855-08	2494377	151336822	3933738	1697	38745											
MAGEA3	4102	broad.mit.edu	37	chrX	151935332	151935332	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcacatagctggtttcaaCgagggcccttggaccccaca	9	13	2	0	rs35983118	byFrequency;by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151935332	T	T	151935332	3	4	21	1	0	0	0	0	1	0	0	0	9257	536	19	4	113	4	MAGEA3	23	151935332	Missense_Mutation	SNP	C	TCGA-05-4424-01A-22D-1855-08	598510	151935332	3335228	1698	38746											
AVPR2	554	broad.mit.edu	37	chrX	153171941	153171941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccctgtgccccaccagcCatcctgaacccaacctagat	6	19	0	2			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153171941	A	A	153171941	1	1	21	0	1	0	0	0	0	0	0	0	1238	609	21	2		2	AVPR2	23	153171941	Intron	SNP	C	TCGA-05-4424-01A-22D-1855-08	1236609	153171941	2098619	1699	38747											
MECP2	4204	broad.mit.edu	37	chrX	153296144	153296144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggagcagtggcacggGggcctttggggactctgagt	21	7	1	1			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153296144	T	T	153296144	3	4	21	1	0	0	0	0	1	0	0	0	9516	1232	43	2	329	2	MECP2	23	153296144	Missense_Mutation	SNP	G	TCGA-05-4424-01A-22D-1855-08	124203	153296144	1974416	1700	38748											
CLCN6	1185	broad.mit.edu	37	chr1	11866266	11866266	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcacgtgaggcgcagaTcctggctgggagggggttgg	19	9	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11866266	A	A	11866266	1	1	22	0	1	0	0	0	0	0	0	0	3498	1450	50	5		5	CLCN6	1	11866266	5'UTR	SNP	T	TCGA-05-4425-01A-01D-1753-08		11866266	237384355	1	38749											
EPHB2	2048	broad.mit.edu	37	chr1	23240069	23240069	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggaggtttgacattcAcctgcctcggctcacctctt	9	13	4	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23240069	C	C	23240069	1	2	22	0	1	0	0	0	0	0	0	0	5217	174	6	5		5	EPHB2	1	23240069	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	11373803	23240069	226010552	2	38750											
ARID1A	8289	broad.mit.edu	37	chr1	27056307	27056307	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggtacccgatgaccatgCagggccgggcgcagagtgcc	16	13	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27056307	T	T	27056307	4	4	22	1	0	0	0	0	0	1	0	0	915	711	25	4	1309	4	ARID1A	1	27056307	Nonsense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	3816238	27056307	222194314	3	38751											
CGN	57530	broad.mit.edu	37	chr1	151502367	151502367	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggggtctgagctgccacCccctgaaccgtccttaggct	11	16	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151502367	T	T	151502367	1	4	22	0	1	0	0	0	0	0	0	0	3333	638	22	4		4	CGN	1	151502367	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	124446060	151502367	97748254	4	38752											
NFASC	23114	broad.mit.edu	37	chr1	204956837	204956837	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattaggggaggcagatgggActcaatccctgctctccttt	12	10	2	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204956837	C	C	204956837	1	2	22	0	1	0	0	0	0	0	0	0	10454	290	10	5		5	NFASC	1	204956837	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	53454470	204956837	44293784	5	38753											
PFKFB2	5208	broad.mit.edu	37	chr1	207228017	207228017	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttctttcttccccttccCttttttacattctacttctc	1	15	5	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207228017	T	T	207228017	1	4	22	0	1	0	0	0	0	0	0	0	11856	696	24	4		4	PFKFB2	1	207228017	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	2271180	207228017	42022604	6	38754											
LAMB3	3914	broad.mit.edu	37	chr1	209797107	209797107	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggaatggagatggaggagGagcaggagggagagggggtg	25	1	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209797107	C	C	209797107	1	2	22	0	1	0	0	0	0	0	0	0	8684	1189	41	4		4	LAMB3	1	209797107	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	2569090	209797107	39453514	7	38755											
CNIH4	29097	broad.mit.edu	37	chr1	224553427	224553427	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcatgggatacaaagttaTagcagtatgcaaatctggga	11	5	1	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224553427	C	C	224553427	1	2	22	0	1	0	0	0	0	0	0	0	3637	1421	49	5		5	CNIH4	1	224553427	Intron	SNP	T	TCGA-05-4425-01A-01D-1753-08	14756320	224553427	24697194	8	38756											
ATAD2B	54454	broad.mit.edu	37	chr2	24103532	24103532	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggaggtgcttggtatcgaTccactgtttttctctgtctc	10	9	2	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24103532	A	A	24103532	3	1	22	1	0	0	0	0	1	0	0	0	1076	1435	50	5	3586	5	ATAD2B	2	24103532	Missense_Mutation	SNP	T	TCGA-05-4425-01A-01D-1753-08		24103532	219095841	9	38757											
THUMPD2	80745	broad.mit.edu	37	chr2	39988360	39988360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaagaagttaaagaaaaAgcgtcaagaaaagaaaaagc	9	3	1	5			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39988360	G	G	39988360	1	3	22	0	1	0	0	0	0	0	0	0	16006	87	3	5		5	THUMPD2	2	39988360	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	15884828	39988360	203211013	10	38758											
FSHR	2492	broad.mit.edu	37	chr2	49195904	49195904	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggctggcttccatgagggCgacaagcttttccagagtag	14	9	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49195904	T	T	49195904	3	4	22	1	0	0	0	0	1	0	0	0	6133	768	27	4	1308	4	FSHR	2	49195904	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	9207544	49195904	194003469	11	38759											
PROKR1	10887	broad.mit.edu	37	chr2	68882446	68882446	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacggcttcaccatcgtgcGcgacttcttccccaccgtgt	8	17	2	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68882446	A	A	68882446	3	1	22	1	0	0	0	0	1	0	0	0	12658	1087	38	4	926	4	PROKR1	2	68882446	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	19686542	68882446	174316927	12	38760											
EGR4	1961	broad.mit.edu	37	chr2	73518784	73518784	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtggtgaggtggtcgctgCggctgaagttgcggaggcag	21	7	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73518784	T	T	73518784	3	4	22	1	0	0	0	0	1	0	0	0	5014	768	27	4	202	4	EGR4	2	73518784	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	4636338	73518784	169680589	13	38761											
TTN	7273	broad.mit.edu	37	chr2	179437059	179437059	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcagcaggcagcccaatGccatattcattttctgcgag	9	11	3	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179437059	A	A	179437059	2	1	22	1	0	0	0	0	0	0	0	1	16861	1306	46	4		4	TTN	2	179437059	Silent	SNP	G	TCGA-05-4425-01A-01D-1753-08	105918275	179437059	63762314	14	38762											
SPEG	10290	broad.mit.edu	37	chr2	220334106	220334106	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcgcatgacacagtgtacGtgtctgggaagttccccggg	15	11	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220334106	A	A	220334106	1	1	22	0	1	0	0	0	0	0	0	0	15154	1160	40	4		4	SPEG	2	220334106	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	40897047	220334106	22865267	15	38763											
COL6A3	1293	broad.mit.edu	37	chr2	238289959	238289959	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgttggatgggtattgAaataaaattcaggcctcaca	9	5	2	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238289959	G	G	238289959	3	3	22	1	0	0	0	0	1	0	0	0	3733	246	9	5	8244	5	COL6A3	2	238289959	Missense_Mutation	SNP	A	TCGA-05-4425-01A-01D-1753-08	17955853	238289959	4909414	16	38764											
CAMK1	8536	broad.mit.edu	37	chr3	9801424	9801424	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctccatcaagtgccggatGaaatctttggctaaaccccc	7	13	3	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9801424	T	T	9801424	3	4	22	1	0	0	0	0	1	0	0	0	2622	1281	45	3	372	3	CAMK1	3	9801424	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08		9801424	188221006	17	38765											
SCN10A	6336	broad.mit.edu	37	chr3	38791573	38791573	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcacttaccctcaaggaCggaggttatgatactgacaa	10	10	1	2	rs151303346	byFrequency	TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38791573	T	T	38791573	3	4	22	1	0	0	0	0	1	0	0	0	14025	536	19	4	4076	4	SCN10A	3	38791573	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	28990149	38791573	159230857	18	38766											
SCN10A	6336	broad.mit.edu	37	chr3	38833796	38833796	+	Intron	DEL	C	-	-													aactacaggtcaatgagagtCaaatgcaggtacagagaggc							TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38833796	-	-	38833796	6	5	22	0	1	1	0	1	0	0	0	0	14025	841	29	0		0	SCN10A	3	38833796	Intron	DEL	C	TCGA-05-4425-01A-01D-1753-08	42223	38833796	159188634	19	38767											
CTNNB1	1499	broad.mit.edu	37	chr3	41266137	41266137	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccactaccacagctccttCtctgagtggtaaaggcaatc	8	13	1	1	rs121913409		TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41266137	T	T	41266137	3	4	22	1	0	0	0	0	1	0	0	0	4050	913	32	4	140	4	CTNNB1	3	41266137	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	2432341	41266137	156756293	20	38768											
SNRK	54861	broad.mit.edu	37	chr3	43381980	43381980	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggacatagcggatcgagaCgccattgtagagtacgtcaa	14	8	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43381980	T	T	43381980	2	4	22	1	0	0	0	0	0	0	0	1	14965	535	19	4		4	SNRK	3	43381980	Silent	SNP	C	TCGA-05-4425-01A-01D-1753-08	2115843	43381980	154640450	21	38769											
SETD2	29072	broad.mit.edu	37	chr3	47143009	47143010	+	Frame_Shift_Ins	INS	-	A	A													gaaggaaccagtttggtggtINSaaaaaacccaaccctcagtt							TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47143010	A	A	47143009	7	5	22	1	0	1	1	0	0	0	0	0	14244	1638	57	0	2796	0	SETD2	3	47143009	Frame_Shift_Ins	INS	-	TCGA-05-4425-01A-01D-1753-08	3761029	47143009	150879421	22	38770											
C3orf75	54859	broad.mit.edu	37	chr3	47539726	47539726	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcccctatgtagtcaagaAtcacaggtacacgggcaaga	9	11	3	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47539726	G	G	47539726	1	3	22	0	1	0	0	0	0	0	0	0	2267	116	4	5		5	C3orf75	3	47539726	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	396717	47539726	150482704	23	38771											
BSN	8927	broad.mit.edu	37	chr3	49693126	49693126	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctcagtcacggacctgcGtcatcctacagaccttttgg	10	13	3	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49693126	A	A	49693126	3	1	22	1	0	0	0	0	1	0	0	0	1539	1145	40	4	6155	4	BSN	3	49693126	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	2153400	49693126	148329304	24	38772											
TMPRSS7	344805	broad.mit.edu	37	chr3	111768943	111768943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgggactctgaataaagGtccagtcagaagagagagac	13	7	3	4			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111768943	T	T	111768943	1	4	22	0	1	0	0	0	0	0	0	0	16375	1276	44	3		3	TMPRSS7	3	111768943	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	62075817	111768943	86253487	25	38773											
BOC	91653	broad.mit.edu	37	chr3	112998136	112998136	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaccatctccacggcctcCgagacctcagtgtacgtgac	8	18	2	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112998136	T	T	112998136	2	4	22	1	0	0	0	0	0	0	0	1	1487	639	23	4		4	BOC	3	112998136	Silent	SNP	C	TCGA-05-4425-01A-01D-1753-08	1229193	112998136	85024294	26	38774											
ADCY5	111	broad.mit.edu	37	chr3	123021953	123021953	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacagaagccctgctcatcGcccaggctgtagttgacggc	11	15	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123021953	A	A	123021953	2	1	22	1	0	0	0	0	0	0	0	1	297	1074	38	4		4	ADCY5	3	123021953	Silent	SNP	G	TCGA-05-4425-01A-01D-1753-08	10023817	123021953	75000477	27	38775											
VEPH1	79674	broad.mit.edu	37	chr3	157213089	157213089	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggagaagaggtccccaGctcgtgaaagatctttttgt	11	8	1	4			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157213089	C	C	157213089	3	2	22	1	0	0	0	0	1	0	0	0	17281	971	34	4	2625	4	VEPH1	3	157213089	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	34191136	157213089	40809341	28	38776											
YEATS2	55689	broad.mit.edu	37	chr3	183515839	183515839	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgatgcctgtgaataaaGgtgagtcccttgcccacggg	12	11	0	3			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183515839	C	C	183515839	3	2	22	1	0	0	0	0	1	0	0	0	17599	1014	35	4	3308	4	YEATS2	3	183515839	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	26302750	183515839	14506591	29	38777											
TMEM44	93109	broad.mit.edu	37	chr3	194331817	194331817	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcattttctaaaaacaaGgtcacattttattcaaaagg	7	6	3	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194331817	A	A	194331817	1	1	22	0	1	0	0	0	0	0	0	0	16291	1015	35	4		4	TMEM44	3	194331817	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	10815978	194331817	3690613	30	38778											
GRID2	2895	broad.mit.edu	37	chr4	94145938	94145938	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaagaaggtaacttcttaAttttcatgtaaaaaggatat	6	4	3	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94145938	G	G	94145938	1	3	22	0	1	0	0	0	0	0	0	0	6838	116	4	5		5	GRID2	4	94145938	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08		94145938	97008338	31	38779											
NDST3	9348	broad.mit.edu	37	chr4	119059263	119059263	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcccctcaccattcgggcGtctaccctgtacatgttcag	9	15	3	0	rs150758016	byFrequency	TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119059263	A	A	119059263	3	1	22	1	0	0	0	0	1	0	0	0	10352	1145	40	4	1293	4	NDST3	4	119059263	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	24913325	119059263	72095013	32	38780											
ADAD1	132612	broad.mit.edu	37	chr4	123317614	123317614	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actatctttgcccctgtacaCaatggtgttgcattgatttg	8	9	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123317614	T	T	123317614	1	4	22	0	1	0	0	0	0	0	0	0	231	493	17	4		4	ADAD1	4	123317614	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	4258351	123317614	67836662	33	38781											
CDH12	1010	broad.mit.edu	37	chr5	21884285	21884285	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcttgtgagaactgcttTattggatgctgctggtgtgg	14	5	0	1	rs141913915	by1000genomes	TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21884285	C	C	21884285	1	2	22	0	1	0	0	0	0	0	0	0	3128	1769	61	5		5	CDH12	5	21884285	Intron	SNP	T	TCGA-05-4425-01A-01D-1753-08		21884285	159030975	34	38782											
LCP2	3937	broad.mit.edu	37	chr5	169675887	169675887	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcaggaacttcactttcaGtttttttatctgcataatat	5	7	3	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169675887	A	A	169675887	1	1	22	0	1	0	0	0	0	0	0	0	8764	1044	36	4		4	LCP2	5	169675887	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	147791602	169675887	11239373	35	38783											
SNRPC	6631	broad.mit.edu	37	chr6	34730288	34730288	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgatactagacacgCtacttatataaaggtaaaac	7	8	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34730288	T	T	34730288	1	4	22	0	1	0	0	0	0	0	0	0	14977	812	28	4		4	SNRPC	6	34730288	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08		34730288	136384779	36	38784											
GNMT	27232	broad.mit.edu	37	chr6	42931216	42931216	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcttagtgggggtgaggcGgtagttgggggagctgaggt	23	3	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42931216	A	A	42931216	1	1	22	0	1	0	0	0	0	0	0	0	6604	1131	39	4		4	GNMT	6	42931216	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	8200928	42931216	128183851	37	38785											
ESR1	2099	broad.mit.edu	37	chr6	152202018	152202018	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttttttcttttaattgTtttttttctattcttatttt	3	3	3	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152202018	A	A	152202018	1	1	22	0	1	0	0	0	0	0	0	0	5298	1740	60	5		5	ESR1	6	152202018	Intron	SNP	T	TCGA-05-4425-01A-01D-1753-08	109270802	152202018	18913049	38	38786											
CNTNAP2	26047	broad.mit.edu	37	chr7	146829728	146829728	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaattcagatcttcaagacGcttacttggttgtagtgtgt	9	6	3	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146829728	C	C	146829728	1	2	22	0	1	0	0	0	0	0	0	0	3679	1102	38	4		4	CNTNAP2	7	146829728	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08		146829728	12308935	39	38787											
FGFR1	2260	broad.mit.edu	37	chr8	38314896	38314896	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaggcaaggtcggggaCggcctagcggtgcagagtgt	18	8	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38314896	T	T	38314896	2	4	22	1	0	0	0	0	0	0	0	1	5920	523	19	4		4	FGFR1	8	38314896	Silent	SNP	C	TCGA-05-4425-01A-01D-1753-08		38314896	108049126	40	38788											
CYP7A1	1581	broad.mit.edu	37	chr8	59409860	59409860	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttacttggtaaacacgggAaattggctttcccttgtaca	8	10	0	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59409860	G	G	59409860	1	3	22	0	1	0	0	0	0	0	0	0	4229	261	9	5		5	CYP7A1	8	59409860	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	21094964	59409860	86954162	41	38789											
CHD7	55636	broad.mit.edu	37	chr8	61765656	61765656	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgaccctgagttatccttCttggatgcacataaaaactt	6	9	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61765656	T	T	61765656	2	4	22	1	0	0	0	0	0	0	0	1	3361	912	32	4		4	CHD7	8	61765656	Silent	SNP	C	TCGA-05-4425-01A-01D-1753-08	2355796	61765656	84598366	42	38790											
VPS13B	157680	broad.mit.edu	37	chr8	100523686	100523686	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgatttatgtcaacacaAgtgtaatcagaatttttatt	5	5	2	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100523686	G	G	100523686	3	3	22	1	0	0	0	0	1	0	0	0	17317	72	3	5	4958	5	VPS13B	8	100523686	Missense_Mutation	SNP	A	TCGA-05-4425-01A-01D-1753-08	38758030	100523686	45840336	43	38791											
ASTN2	23245	broad.mit.edu	37	chr9	119976967	119976967	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctgccaacgtcgctgggCgtacagcgccacggtgaaca	12	14	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119976967	T	T	119976967	3	4	22	1	0	0	0	0	1	0	0	0	1069	768	27	4	3493	4	ASTN2	9	119976967	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08		119976967	21236464	44	38792											
SCAI	286205	broad.mit.edu	37	chr9	127730675	127730675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatggagggacacgcaatcGtgggagtacacccagttttt	12	9	1	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127730675	A	A	127730675	1	1	22	0	1	0	0	0	0	0	0	0	13981	1160	40	4		4	SCAI	9	127730675	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	7753708	127730675	13482756	45	38793											
C9orf106	414318	broad.mit.edu	37	chr9	132084686	132084686	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagggggcaggggtaaacaTggtcccaggccctgttgtcc	16	10	0	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132084686	C	C	132084686	2	2	22	1	0	0	0	0	0	0	0	1	2473	1461	51	5		5	C9orf106	9	132084686	Silent	SNP	T	TCGA-05-4425-01A-01D-1753-08	4354011	132084686	9128745	46	38794											
C9orf78	51759	broad.mit.edu	37	chr9	132597409	132597409	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctatgggagccccgcccCaaacgcaccgaacctcctct	8	19	1	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132597409	T	T	132597409	1	4	22	0	1	0	0	0	0	0	0	0	2522	609	21	4		4	C9orf78	9	132597409	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	512723	132597409	8616022	47	38795											
USP20	10868	broad.mit.edu	37	chr9	132637634	132637634	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcgacagcaggtggtgtcCctggccgccatgcgggagcc	17	13	0	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132637634	T	T	132637634	2	4	22	1	0	0	0	0	0	0	0	1	17178	610	22	4		4	USP20	9	132637634	Silent	SNP	C	TCGA-05-4425-01A-01D-1753-08	40225	132637634	8575797	48	38796											
ASS1	445	broad.mit.edu	37	chr9	133327572	133327572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcggggggcactggctGtctcagggtcactcaggttg	18	10	3	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133327572	T	T	133327572	1	4	22	0	1	0	0	0	0	0	0	0	1065	1392	48	3		3	ASS1	9	133327572	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	689938	133327572	7885859	49	38797											
TUBB2C	10383	broad.mit.edu	37	chr9	140136447	140136447	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcggggcccttcgggcagaTcttccggccggacaacttcg	13	15	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140136447	A	A	140136447	3	1	22	1	0	0	0	0	1	0	0	0	16882	1435	50	5	261	5	TUBB2C	9	140136447	Missense_Mutation	SNP	T	TCGA-05-4425-01A-01D-1753-08	6808875	140136447	1076984	50	38798											
DNA2	1763	broad.mit.edu	37	chr10	70192040	70192040	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatataaactgaggttcaCgaaagtcaataattaaatct	7	5	3	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70192040	T	T	70192040	3	4	22	1	0	0	0	0	1	0	0	0	4636	536	19	4	1426	4	DNA2	10	70192040	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08		70192040	65342707	51	38799											
PAX2	5076	broad.mit.edu	37	chr10	102584290	102584290	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcacacatacccctgcacGtctgcacagagctctttcct	7	16	2	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102584290	A	A	102584290	1	1	22	0	1	0	0	0	0	0	0	0	11573	1160	40	4		4	PAX2	10	102584290	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	32392250	102584290	32950457	52	38800											
LRRC55	219527	broad.mit.edu	37	chr11	56954647	56954647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttactttttccagcaagCggttgtgggtggactttcca	10	9	1	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56954647	T	T	56954647	1	4	22	0	1	0	0	0	0	0	0	0	9098	783	27	4		4	LRRC55	11	56954647	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08		56954647	78051869	53	38801											
NLRX1	79671	broad.mit.edu	37	chr11	119045824	119045825	+	Frame_Shift_Ins	INS	-	T	T													aggaatacctggctgccctcINStacattgtgctgggtttgcg							TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119045825	T	T	119045824	7	5	22	1	0	1	1	0	0	0	0	0	10580	900	32	0	1530	0	NLRX1	11	119045824	Frame_Shift_Ins	INS	-	TCGA-05-4425-01A-01D-1753-08	62091177	119045824	15960692	54	38802											
B3GAT1	27087	broad.mit.edu	37	chr11	134252533	134252533	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctctgtttccttctccCgatctgtagggagggtctgg	13	11	4	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134252533	T	T	134252533	1	4	22	0	1	0	0	0	0	0	0	0	1258	667	23	4		4	B3GAT1	11	134252533	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	15206709	134252533	753983	55	38803											
CD163L1	283316	broad.mit.edu	37	chr12	7556475	7556475	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaagtcacagagaaacGtctgaattgggtttgggaca	14	5	2	3			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7556475	A	A	7556475	1	1	22	0	1	0	0	0	0	0	0	0	2998	1160	40	4		4	CD163L1	12	7556475	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08		7556475	126295420	56	38804											
PIK3C2G	5288	broad.mit.edu	37	chr12	18573850	18573850	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccttaccattaacagcttAgtggatatatttactgtgta	6	7	0	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18573850	G	G	18573850	1	3	22	0	1	0	0	0	0	0	0	0	12006	435	15	5		5	PIK3C2G	12	18573850	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	11017375	18573850	115278045	57	38805											
TMTC1	83857	broad.mit.edu	37	chr12	29670381	29670381	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgccaagcggagctccctCtgagaaggctgaagtgctgc	14	11	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29670381	G	G	29670381	3	3	22	1	0	0	0	0	1	0	0	0	16383	912	32	4	520	4	TMTC1	12	29670381	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	11096531	29670381	104181514	58	38806											
NELL2	4753	broad.mit.edu	37	chr12	45105123	45105123	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaggttatctgatgagactCtggacaatccaaagctggac	10	9	2	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45105123	A	A	45105123	4	1	22	1	0	0	0	0	0	1	0	0	10429	922	32	3	1349	3	NELL2	12	45105123	Nonsense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	15434742	45105123	88746772	59	38807											
C12orf54	121273	broad.mit.edu	37	chr12	48880078	48880078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggttgtagacaggaggcCaaaaaaaaaagctacctgac	11	7	0	3			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48880078	A	A	48880078	1	1	22	0	1	0	0	0	0	0	0	0	1712	609	21	2		2	C12orf54	12	48880078	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	3774955	48880078	84971817	60	38808											
PRPF40B	25766	broad.mit.edu	37	chr12	50026779	50026780	+	Intron	INS	-	C	C													gccttgaccaccattctgtgINScccccccccccacccagagg							TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50026780	C	C	50026779	6	5	22	0	1	1	1	0	0	0	0	0	12678	1334	46	0		0	PRPF40B	12	50026779	Intron	INS	-	TCGA-05-4425-01A-01D-1753-08	1146701	50026779	83825116	61	38809											
LRP1	4035	broad.mit.edu	37	chr12	57572723	57572723	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcccctgctcccacctgTgtctcatcaactacaaccgg	8	17	2	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57572723	G	G	57572723	3	3	22	1	0	0	0	0	1	0	0	0	9038	1696	59	5	4767	5	LRP1	12	57572723	Missense_Mutation	SNP	T	TCGA-05-4425-01A-01D-1753-08	7545944	57572723	76279172	62	38810											
HMGA2	8091	broad.mit.edu	37	chr12	66221767	66221767	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacaacagcattttttttTccctcacaattaggaaccaa	4	12	1	0	rs146235774		TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66221767	C	C	66221767	1	2	22	0	1	0	0	0	0	0	0	0	7291	1798	62	5		5	HMGA2	12	66221767	Intron	SNP	T	TCGA-05-4425-01A-01D-1753-08	8649044	66221767	67630128	63	38811											
C12orf50	160419	broad.mit.edu	37	chr12	88379989	88379989	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacccctaaagtaacatttAcgtcacatgacagtaatttg	6	9	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88379989	G	G	88379989	1	3	22	0	1	0	0	0	0	0	0	0	1708	406	14	5		5	C12orf50	12	88379989	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	22158222	88379989	45471906	64	38812											
FLT1	2321	broad.mit.edu	37	chr13	29001831	29001831	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgatttttgaattcataAatgttcactaatttgttgcc	6	7	2	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29001831	G	G	29001831	1	3	22	0	1	0	0	0	0	0	0	0	5999	29	1	5		5	FLT1	13	29001831	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08		29001831	86168047	65	38813											
AKAP11	11215	broad.mit.edu	37	chr13	42882829	42882829	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttacattattatttaaaaAttctaaatttgaaaatatgc	2	3	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42882829	G	G	42882829	1	3	22	0	1	0	0	0	0	0	0	0	447	116	4	5		5	AKAP11	13	42882829	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	13880998	42882829	72287049	66	38814											
FARP1	10160	broad.mit.edu	37	chr13	99090191	99090191	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcatcaggccgccacacatCcactcattgtttcaaatcaa	4	15	5	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99090191	A	A	99090191	1	1	22	0	1	0	0	0	0	0	0	0	5733	870	30	3		3	FARP1	13	99090191	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	56207362	99090191	16079687	67	38815											
NDRG2	57447	broad.mit.edu	37	chr14	21486710	21486710	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtcacgcccactgtggCgcctcccccgtaagggaccc	12	17	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21486710	T	T	21486710	1	4	22	0	1	0	0	0	0	0	0	0	10347	783	27	4		4	NDRG2	14	21486710	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08		21486710	85862830	68	38816											
MPP5	64398	broad.mit.edu	37	chr14	67746041	67746041	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaggatgatgccaatacgtCgaagtgcacagttggagcgt	13	9	0	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67746041	G	G	67746041	3	3	22	1	0	0	0	0	1	0	0	0	9831	876	31	4	156	4	MPP5	14	67746041	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08	46259331	67746041	39603499	69	38817											
TMEM63C	57156	broad.mit.edu	37	chr14	77715255	77715255	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaagggctgcacatccGcagatggggaggaggaattg	16	9	0	1	rs143194259	by1000genomes	TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77715255	A	A	77715255	1	1	22	0	1	0	0	0	0	0	0	0	16315	1102	38	4		4	TMEM63C	14	77715255	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	9969214	77715255	29634285	70	38818											
GSTZ1	2954	broad.mit.edu	37	chr14	77796079	77796079	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgcccagaataagatgtTtatgtggcctccccacagcc	9	14	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77796079	C	C	77796079	1	2	22	0	1	0	0	0	0	0	0	0	6913	1856	64	5		5	GSTZ1	14	77796079	Intron	SNP	T	TCGA-05-4425-01A-01D-1753-08	80824	77796079	29553461	71	38819											
KIAA1409	57578	broad.mit.edu	37	chr14	94170866	94170866	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcccacatccgtgcgCgacgtgaaagggattcaatg	14	11	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94170866	T	T	94170866	1	4	22	0	1	0	0	0	0	0	0	0	8300	783	27	4		4	KIAA1409	14	94170866	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	16374787	94170866	13178674	72	38820											
TECPR2	9895	broad.mit.edu	37	chr14	102873663	102873663	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagattcatttgttttcaAcgtttccccaggggaagacg	9	9	2	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102873663	G	G	102873663	1	3	22	0	1	0	0	0	0	0	0	0	15866	58	2	5		5	TECPR2	14	102873663	Intron	SNP	A	TCGA-05-4425-01A-01D-1753-08	8702797	102873663	4475877	73	38821											
THBS1	7057	broad.mit.edu	37	chr15	39880808	39880808	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtacagaaacgtagtcgtcTctgcaacaaccccacacccc	7	16	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39880808	G	G	39880808	3	3	22	1	0	0	0	0	1	0	0	0	15976	1551	54	5	1587	5	THBS1	15	39880808	Missense_Mutation	SNP	T	TCGA-05-4425-01A-01D-1753-08		39880808	62650584	74	38822											
STRC	161497	broad.mit.edu	37	chr15	43893571	43893571	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgggtgtttgggaagccGtagggaggaggaaaagtgtt	20	2	0	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43893571	A	A	43893571	1	1	22	0	1	0	0	0	0	0	0	0	15446	1160	40	4		4	STRC	15	43893571	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	4012763	43893571	58637821	75	38823											
IREB2	3658	broad.mit.edu	37	chr15	78765429	78765429	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtggaatcatttcttttggGaagccttgggttcagtgtcc	12	7	3	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78765429	A	A	78765429	1	1	22	0	1	0	0	0	0	0	0	0	7896	1189	41	4		4	IREB2	15	78765429	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	34871858	78765429	23765963	76	38824											
FAM174B	400451	broad.mit.edu	37	chr15	93173584	93173584	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctttcccgacctgcaggaGaagaagcacattcatgagaa	9	11	2	3			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93173584	A	A	93173584	1	1	22	0	1	0	0	0	0	0	0	0	5541	957	33	4		4	FAM174B	15	93173584	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	14408155	93173584	9357808	77	38825											
GRIN2A	2903	broad.mit.edu	37	chr16	10274214	10274214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgctcggcgccggaccgcGccagaccagaagggccggca	16	17	0	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10274214	A	A	10274214	3	1	22	1	0	0	0	0	1	0	0	0	6845	1087	38	4	4387	4	GRIN2A	16	10274214	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08		10274214	80080539	78	38826											
SNX29	92017	broad.mit.edu	37	chr16	12662416	12662416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcccaaagcagcttcccGcttccccaaactgtcccggg	9	19	0	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12662416	T	T	12662416	3	4	22	1	0	0	0	0	1	0	0	0	15012	1087	38	3	1267	3	SNX29	16	12662416	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	2388202	12662416	77692337	79	38827											
CPPED1	55313	broad.mit.edu	37	chr16	12798545	12798545	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggttgaagtagtagtcGtcgtcctcgtcgatgctctc	12	10	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12798545	A	A	12798545	2	1	22	1	0	0	0	0	0	0	0	1	3854	1136	40	4		4	CPPED1	16	12798545	Silent	SNP	G	TCGA-05-4425-01A-01D-1753-08	136129	12798545	77556208	80	38828											
DNAH3	55567	broad.mit.edu	37	chr16	20996705	20996705	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcaatctggtatagctcGtatgcgttcatgaatgtgga	10	7	3	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20996705	A	A	20996705	2	1	22	1	0	0	0	0	0	0	0	1	4643	1140	40	4		4	DNAH3	16	20996705	Silent	SNP	G	TCGA-05-4425-01A-01D-1753-08	8198160	20996705	69358048	81	38829											
ERN2	10595	broad.mit.edu	37	chr16	23716365	23716365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggtgccaggtgtagacGcccatcacaggcacgcccag	12	15	1	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23716365	T	T	23716365	2	4	22	1	0	0	0	0	0	0	0	1	5280	1074	38	3		3	ERN2	16	23716365	Silent	SNP	G	TCGA-05-4425-01A-01D-1753-08	2719660	23716365	66638388	82	38830											
ALDOA	226	broad.mit.edu	37	chr16	30078933	30078933	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaggcggatgatgggcGtcccttcccccaagttatca	11	13	1	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30078933	A	A	30078933	3	1	22	1	0	0	0	0	1	0	0	0	507	1145	40	4	281	4	ALDOA	16	30078933	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	6362568	30078933	60275820	83	38831											
NECAB2	54550	broad.mit.edu	37	chr16	84035515	84035515	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccctctccaggatcttgGtgccaggtagggggcaaagg	16	10	2	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84035515	A	A	84035515	3	1	22	1	0	0	0	0	1	0	0	0	10400	1261	44	4	1172	4	NECAB2	16	84035515	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	53956582	84035515	6319238	84	38832											
PPP1R1B	84152	broad.mit.edu	37	chr17	37785471	37785471	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttccggctctcagagCactcctcaccaggtaggccc	10	16	2	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37785471	T	T	37785471	3	4	22	1	0	0	0	0	1	0	0	0	12469	710	25	4	136	4	PPP1R1B	17	37785471	Missense_Mutation	SNP	C	TCGA-05-4425-01A-01D-1753-08		37785471	43409739	85	38833											
DHX58	79132	broad.mit.edu	37	chr17	40257096	40257096	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accaccacattgcaatgtggGatgtccagcccctcctccgc	8	17	0	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40257096	A	A	40257096	2	1	22	1	0	0	0	0	0	0	0	1	4554	1164	41	4		4	DHX58	17	40257096	Silent	SNP	G	TCGA-05-4425-01A-01D-1753-08	2471625	40257096	40938114	86	38834											
CRHR1	1394	broad.mit.edu	37	chr17	43910796	43910796	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcttgcacactccggccCgctggtgtgctcaaattgca	10	15	2	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43910796	T	T	43910796	1	4	22	0	1	0	0	0	0	0	0	0	3903	667	23	4		4	CRHR1	17	43910796	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08	3653700	43910796	37284414	87	38835											
MARCH10	162333	broad.mit.edu	37	chr17	60837500	60837500	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctgccaggtcaacacGcccgttcaccagagagattc	9	14	4	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60837500	A	A	60837500	1	1	22	0	1	0	0	0	0	0	0	0	9391	1102	38	4		4	MARCH10	17	60837500	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	16926704	60837500	20357710	88	38836											
KPNA2	3838	broad.mit.edu	37	chr17	66033402	66033402	+	Intron	DEL	A	-	-													gggtgaaaactgaggtatttAaaaaaaaaatgccctcactt					rs34040105		TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66033402	-	-	66033402	6	5	22	0	1	1	0	1	0	0	0	0	8501	377	13	0		0	KPNA2	17	66033402	Intron	DEL	A	TCGA-05-4425-01A-01D-1753-08	5195902	66033402	15161808	89	38837											
DNAI2	64446	broad.mit.edu	37	chr17	72310145	72310145	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgggttccagggtgctcagcGacccaggcttcagccatttg	13	13	2	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72310145	A	A	72310145	1	1	22	0	1	0	0	0	0	0	0	0	4650	1073	37	4		4	DNAI2	17	72310145	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	6276743	72310145	8885065	90	38838											
C18orf34	374864	broad.mit.edu	37	chr18	30928852	30928852	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtaggaggaacaactttAcctctcttttctcctggttt	7	10	2	0	rs140419270	byFrequency;by1000genomes	TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30928852	G	G	30928852	5	3	22	1	0	0	0	0	0	0	1	0	1920	405	14	5	2208	5	C18orf34	18	30928852	Splice_Site	SNP	A	TCGA-05-4425-01A-01D-1753-08		30928852	47148396	91	38839											
GTF2F1	2962	broad.mit.edu	37	chr19	6381548	6381548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcccccatctccccggcccGcccagccatcgcctaccctt	6	25	1	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6381548	A	A	6381548	1	1	22	0	1	0	0	0	0	0	0	0	6923	1102	38	4		4	GTF2F1	19	6381548	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08		6381548	52747435	92	38840											
COL5A3	50509	broad.mit.edu	37	chr19	10080323	10080323	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctagcccccattggaccCgtcctccctgggggcccatc	9	20	1	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10080323	T	T	10080323	2	4	22	1	0	0	0	0	0	0	0	1	3730	639	23	4		4	COL5A3	19	10080323	Silent	SNP	C	TCGA-05-4425-01A-01D-1753-08	3698775	10080323	49048660	93	38841											
ZNF569	148266	broad.mit.edu	37	chr19	37917016	37917016	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgaaaactgcagcatGgacattcacatgagcaaaag	9	9	2	2			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37917016	A	A	37917016	1	1	22	0	1	0	0	0	0	0	0	0	18127	1363	47	4		4	ZNF569	19	37917016	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08	27836693	37917016	21211967	94	38842											
TEX101	83639	broad.mit.edu	37	chr19	43922333	43922333	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctataggtggcattgagtcGtctgtggaggtcaaaggctg	15	6	3	1	rs151129496		TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43922333	A	A	43922333	2	1	22	1	0	0	0	0	0	0	0	1	15895	1132	40	4		4	TEX101	19	43922333	Silent	SNP	G	TCGA-05-4425-01A-01D-1753-08	6005317	43922333	15206650	95	38843											
EYA2	2139	broad.mit.edu	37	chr20	45808545	45808545	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactccctgaaggcactaaAcctcatcaactcccggcaag	6	17	2	1			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45808545	G	G	45808545	3	3	22	1	0	0	0	0	1	0	0	0	5372	43	2	5	1344	5	EYA2	20	45808545	Missense_Mutation	SNP	A	TCGA-05-4425-01A-01D-1753-08		45808545	17216975	96	38844											
PCK1	5105	broad.mit.edu	37	chr20	56137755	56137755	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatcgcaccctgtaggtcGcaccatgtacgtcatcccat	7	17	1	0	rs150560473		TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56137755	A	A	56137755	3	1	22	1	0	0	0	0	1	0	0	0	11675	1087	38	4	420	4	PCK1	20	56137755	Missense_Mutation	SNP	G	TCGA-05-4425-01A-01D-1753-08	10329210	56137755	6887765	97	38845											
TRAPPC10	7109	broad.mit.edu	37	chr21	45509831	45509831	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacggtaacggaggcgtagcGtgcgggccctggcttctttc	15	12	1	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45509831	A	A	45509831	1	1	22	0	1	0	0	0	0	0	0	0	16581	1160	40	4		4	TRAPPC10	21	45509831	Intron	SNP	G	TCGA-05-4425-01A-01D-1753-08		45509831	2620064	98	38846											
MSN	4478	broad.mit.edu	37	chrX	64951882	64951882	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttagtttatttaggtcaCgttaacatctagggctcact	7	8	3	0			TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64951882	T	T	64951882	1	4	22	0	1	0	0	0	0	0	0	0	9979	551	19	4		4	MSN	23	64951882	Intron	SNP	C	TCGA-05-4425-01A-01D-1753-08		64951882	90318678	99	38847											
BRS3	680	broad.mit.edu	37	chrX	135574072	135574073	+	Intron	INS	-	TTTTT	TTTTT													tgttgttgttgttttttgtgINStttttttttttttttttttt					rs12843053		TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTTTT	135574073	TTTTT	TTTTT	135574072	6	5	22	0	1	1	1	0	0	0	0	0	1531	1392	48	0		0	BRS3	23	135574072	Intron	INS	-	TCGA-05-4425-01A-01D-1753-08	70622190	135574072	19696488	100	38848											
FAM58A	92002	broad.mit.edu	37	chrX	152858167	152858167	+	Frame_Shift_Del	DEL	G	-	-													gcggttcagccagttctggaGggaaaccaggtagtggagca							TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152858167	-	-	152858167	7	5	22	1	0	1	0	1	0	0	0	0	5641	1000	35	0	300	0	FAM58A	23	152858167	Frame_Shift_Del	DEL	G	TCGA-05-4425-01A-01D-1753-08	17284095	152858167	2412393	101	38849											
SSU72	29101	broad.mit.edu	37	chr1	1479105	1479106	+	Intron	INS	-	CT	CT													tcacggcctcggccactcccINSctgtcacggcctcggccact					rs5772046		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	1479106	CT	CT	1479105	6	5	23	0	1	1	1	0	0	0	0	0	15320	638	22	0		0	SSU72	1	1479105	Intron	INS	-	TCGA-05-4426-01A-01D-1265-08		1479105	247771516	1	38850											
CHD5	26038	broad.mit.edu	37	chr1	6194248	6194248	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcagcatcttctgtagCagcatgagcttccctgaaga	8	11	4	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6194248	A	A	6194248	2	1	23	1	0	0	0	0	0	0	0	1	3359	697	25	3		3	CHD5	1	6194248	Silent	SNP	C	TCGA-05-4426-01A-01D-1265-08	4715143	6194248	243056373	2	38851											
LOC440563	440563	broad.mit.edu	37	chr1	13183549	13183549	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccatagtccaagtcaaaAgaggagccgtacatctccgc	9	12	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13183549	C	C	13183549	2	2	23	1	0	0	0	0	0	0	0	1	8962	59	3	5		5	LOC440563	1	13183549	Silent	SNP	A	TCGA-05-4426-01A-01D-1265-08	6989301	13183549	236067072	3	38852											
S1PR1	1901	broad.mit.edu	37	chr1	101705711	101705711	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggaagctgtccacccacCggaagcgctctttacttggt	10	13	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101705711	T	T	101705711	1	4	23	0	1	0	0	0	0	0	0	0	13904	667	23	4		4	S1PR1	1	101705711	3'UTR	SNP	C	TCGA-05-4426-01A-01D-1265-08	88522162	101705711	147544910	4	38853											
SYT6	148281	broad.mit.edu	37	chr1	114682198	114682210	+	Intron	DEL	AGGTGTGGGGGTC	-	-													gatgtattaagggagtgtggAggtgtgggggtcagggaagg							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114682210	-	-	114682198	6	5	23	0	1	1	0	1	0	0	0	0	15597	319	11	0		0	SYT6	1	114682198	Intron	DEL	AGGTGTGGGGGTC	TCGA-05-4426-01A-01D-1265-08	12976487	114682198	134568423	5	38854											
ANKRD34A	284615	broad.mit.edu	37	chr1	145473962	145473962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaagaagaggagaagcggGacgtatttgaattccctctt	13	6	1	4			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145473962	T	T	145473962	3	4	23	1	0	0	0	0	1	0	0	0	662	1174	41	3	636	3	ANKRD34A	1	145473962	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	30791764	145473962	103776659	6	38855											
VPS45	11311	broad.mit.edu	37	chr1	150064245	150064245	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaactctgttattatattcTtagctctaacgaatgataaa	4	8	3	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150064245	C	C	150064245	1	2	23	0	1	0	0	0	0	0	0	0	17338	1624	56	5		5	VPS45	1	150064245	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	4590283	150064245	99186376	7	38856											
INSRR	3645	broad.mit.edu	37	chr1	156823801	156823801	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccccaagtgcaggcagtGccacgtcacgcagatgtggc	14	14	1	1	rs55757706	byFrequency;by1000genomes	TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156823801	A	A	156823801	3	1	23	1	0	0	0	0	1	0	0	0	7844	1319	46	4	3596	4	INSRR	1	156823801	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	6759556	156823801	92426820	8	38857											
SPTA1	6708	broad.mit.edu	37	chr1	158627413	158627413	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attttgtcgcctagcagctcGagcacggagagactccatat	10	11	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158627413	A	A	158627413	4	1	23	1	0	0	0	0	0	1	0	0	15234	1066	37	4	4736	4	SPTA1	1	158627413	Nonsense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	1803612	158627413	90623208	9	38858											
RXRG	6258	broad.mit.edu	37	chr1	165380300	165380300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactggtagcacattctgcCtcactctcagctcgctctcg	7	17	4	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165380300	A	A	165380300	3	1	23	1	0	0	0	0	1	0	0	0	13876	680	24	2	746	2	RXRG	1	165380300	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	6752887	165380300	83870321	10	38859											
FMO3	2328	broad.mit.edu	37	chr1	171083304	171083304	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgactgtgtaatctttgcaAcagggtatagttttgcctac	9	7	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171083304	G	G	171083304	3	3	23	1	0	0	0	0	1	0	0	0	6014	43	2	5	1007	5	FMO3	1	171083304	Missense_Mutation	SNP	A	TCGA-05-4426-01A-01D-1265-08	5703004	171083304	78167317	11	38860											
RABGAP1L	9910	broad.mit.edu	37	chr1	174200556	174200557	+	Intron	INS	-	A	A													tgggtggtggtgaagatgttINSatagcatcatcaggtgtaga							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174200557	A	A	174200556	6	5	23	0	1	1	1	0	0	0	0	0	13073	1769	61	0		0	RABGAP1L	1	174200556	Intron	INS	-	TCGA-05-4426-01A-01D-1265-08	3117252	174200556	75050065	12	38861											
HMCN1	83872	broad.mit.edu	37	chr1	185902973	185902973	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggtacagtgctttggtaActtctgaattatgacatctt	8	7	2	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185902973	G	G	185902973	1	3	23	0	1	0	0	0	0	0	0	0	7287	58	2	5		5	HMCN1	1	185902973	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	11702417	185902973	63347648	13	38862											
AHCTF1	25909	broad.mit.edu	37	chr1	247067157	247067157	+	Intron	DEL	G	-	-													ctcaaaaaaaaaaaaaaaaaGaatcacttttcaatatctta							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247067157	-	-	247067157	6	5	23	0	1	1	0	1	0	0	0	0	408	957	33	0		0	AHCTF1	1	247067157	Intron	DEL	G	TCGA-05-4426-01A-01D-1265-08	61164184	247067157	2183464	14	38863											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10914974	10914974	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctgtttcgaaaagtgatTgaagatttcaaaaccaaggc	8	7	2	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10914974	A	A	10914974	2	1	23	1	0	0	0	0	0	0	0	1	1185	1800	63	5		5	ATP6V1C2	2	10914974	Silent	SNP	T	TCGA-05-4426-01A-01D-1265-08		10914974	232284399	15	38864											
DCTN1	1639	broad.mit.edu	37	chr2	74597184	74597184	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccatctcctcagcacccaGagcagcatccacctgtgtta	6	17	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74597184	C	C	74597184	3	2	23	1	0	0	0	0	1	0	0	0	4339	933	33	4	2616	4	DCTN1	2	74597184	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	63682210	74597184	168602189	16	38865											
NMS	129521	broad.mit.edu	37	chr2	101093945	101093945	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgtcgtccatcctttcttAatatgtgcagacaagtagaa	7	9	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101093945	T	T	101093945	1	4	23	0	1	0	0	0	0	0	0	0	10597	377	13	5		5	NMS	2	101093945	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	26496761	101093945	142105428	17	38866											
CLASP1	23332	broad.mit.edu	37	chr2	122227631	122227631	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgattataaaacaattagtCttcgagactgattctgcata	6	7	2	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122227631	A	A	122227631	1	1	23	0	1	0	0	0	0	0	0	0	3485	928	32	3		3	CLASP1	2	122227631	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	21133686	122227631	120971742	18	38867											
ZRANB3	84083	broad.mit.edu	37	chr2	135966607	135966607	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atataaaaatgtctctattgCatgtttacattgttccttgc	5	7	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135966607	T	T	135966607	1	4	23	0	1	0	0	0	0	0	0	0	18353	725	25	4		4	ZRANB3	2	135966607	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	13738976	135966607	107232766	19	38868											
MBD5	55777	broad.mit.edu	37	chr2	149228015	149228015	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttagcagctataatcaaAcaagttctgaagcaggtatg	9	6	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149228015	G	G	149228015	3	3	23	1	0	0	0	0	1	0	0	0	9440	43	2	5	2517	5	MBD5	2	149228015	Missense_Mutation	SNP	A	TCGA-05-4426-01A-01D-1265-08	13261408	149228015	93971358	20	38869											
SPEG	10290	broad.mit.edu	37	chr2	220332258	220332258	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaacagagctccaaccCcgaggggaagcgggggaggg	19	9	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220332258	T	T	220332258	1	4	23	0	1	0	0	0	0	0	0	0	15154	638	22	4		4	SPEG	2	220332258	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	71104243	220332258	22867115	21	38870											
USP40	55230	broad.mit.edu	37	chr2	234460051	234460051	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggcttgagattaatccGgagagggaatgtataacagc	13	5	0	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234460051	T	T	234460051	2	4	23	1	0	0	0	0	0	0	0	1	17199	1115	39	1		1	USP40	2	234460051	Silent	SNP	G	TCGA-05-4426-01A-01D-1265-08	14127793	234460051	8739322	22	38871											
CAPN10	11132	broad.mit.edu	37	chr2	241534077	241534077	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagtttgacgagctcacCgttggctacccggtcacgga	14	11	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241534077	A	A	241534077	2	1	23	1	0	0	0	0	0	0	0	1	2649	639	23	1		1	CAPN10	2	241534077	Silent	SNP	C	TCGA-05-4426-01A-01D-1265-08	7074026	241534077	1665296	23	38872											
GRM7	2917	broad.mit.edu	37	chr3	7348143	7348143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacacggattcagctgacGttctttatcattaatataac	5	9	4	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7348143	T	T	7348143	1	4	23	0	1	0	0	0	0	0	0	0	6868	1160	40	3		3	GRM7	3	7348143	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08		7348143	190674287	24	38873											
IL17RE	132014	broad.mit.edu	37	chr3	9950949	9950949	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaaaaaatgtcccttcCagagctggccagaagcctgt	11	12	0	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9950949	T	T	9950949	4	4	23	1	0	0	0	0	0	1	0	0	7713	595	21	4	814	4	IL17RE	3	9950949	Nonsense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	2602806	9950949	188071481	25	38874											
FGD5	152273	broad.mit.edu	37	chr3	14974723	14974723	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcttaggtcaatatgtgAatgcttttagaagctaagct	8	5	2	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14974723	C	C	14974723	1	2	23	0	1	0	0	0	0	0	0	0	5893	261	9	5		5	FGD5	3	14974723	3'UTR	SNP	A	TCGA-05-4426-01A-01D-1265-08	5023774	14974723	183047707	26	38875											
SEMA3F	6405	broad.mit.edu	37	chr3	50221134	50221134	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgtaatgcacacacagaCgggccttcacacacagtgtc	9	13	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50221134	T	T	50221134	1	4	23	0	1	0	0	0	0	0	0	0	14142	551	19	4		4	SEMA3F	3	50221134	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	35246411	50221134	147801296	27	38876											
IFRD2	7866	broad.mit.edu	37	chr3	50330118	50330118	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtggttaactccgaagcgtCcctcagtggagcaccaaggc	13	12	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50330118	A	A	50330118	1	1	23	0	1	0	0	0	0	0	0	0	7624	870	30	3		3	IFRD2	3	50330118	5'Flank	SNP	C	TCGA-05-4426-01A-01D-1265-08	108984	50330118	147692312	28	38877											
NISCH	11188	broad.mit.edu	37	chr3	52514140	52514140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccctcctcacacccctgGccttggggagctctgtgctt	10	17	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52514140	T	T	52514140	1	4	23	0	1	0	0	0	0	0	0	0	10527	1218	42	3		3	NISCH	3	52514140	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	2184022	52514140	145508290	29	38878											
FLNB	2317	broad.mit.edu	37	chr3	58095236	58095236	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactatttctaacaatgtTttttaatagtattttactgg	5	4	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58095236	C	C	58095236	1	2	23	0	1	0	0	0	0	0	0	0	5992	1856	64	5		5	FLNB	3	58095236	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	5581096	58095236	139927194	30	38879											
RAB43	339122	broad.mit.edu	37	chr3	128853030	128853030	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccacttttccactaactCggctctgactgaacacaaga	5	13	1	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128853030	A	A	128853030	4	1	23	1	0	0	0	0	0	1	0	0	13053	893	31	3		3	RAB43	3	128853030	Nonsense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	70757794	128853030	69169400	31	38880											
EPHB1	2047	broad.mit.edu	37	chr3	134670940	134670940	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccatctatggcagggccaGatctgcaaggtttccccacc	10	15	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134670940	T	T	134670940	1	4	23	0	1	0	0	0	0	0	0	0	5216	957	33	3		3	EPHB1	3	134670940	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	5817910	134670940	63351490	32	38881											
LRRIQ4	344657	broad.mit.edu	37	chr3	169540678	169540678	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactgcccgctgcagatctgTgcactgaagaaccttgaagt	10	12	1	4	rs13062420		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169540678	A	A	169540678	4	1	23	1	0	0	0	0	0	1	0	0	9118	1702	59	5	971	5	LRRIQ4	3	169540678	Nonsense_Mutation	SNP	T	TCGA-05-4426-01A-01D-1265-08	34869738	169540678	28481752	33	38882											
GPR125	166647	broad.mit.edu	37	chr4	22389442	22389442	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtccattctgaatggccaaGttgaggccataagatttttg	11	7	1	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22389442	A	A	22389442	2	1	23	1	0	0	0	0	0	0	0	1	6704	1020	36	4		4	GPR125	4	22389442	Silent	SNP	G	TCGA-05-4426-01A-01D-1265-08		22389442	168764834	34	38883											
REST	5978	broad.mit.edu	37	chr4	57798060	57798060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagatgaaggcatccaCagccatgaaggaagtgacct	12	8	0	5			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57798060	A	A	57798060	3	1	23	1	0	0	0	0	1	0	0	0	13342	477	17	3	3046	3	REST	4	57798060	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	35408618	57798060	133356216	35	38884											
C4orf21	55345	broad.mit.edu	37	chr4	113481807	113481807	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgaacctcatttgactAggaaattataaaggagcaga	8	6	2	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113481807	G	G	113481807	1	3	23	0	1	0	0	0	0	0	0	0	2277	435	15	5		5	C4orf21	4	113481807	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	55683747	113481807	77672469	36	38885											
CCNA2	890	broad.mit.edu	37	chr4	122741887	122741887	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttagtgatgtctggctgttTcttcatgtaacccactttag	9	8	3	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122741887	A	A	122741887	4	1	23	1	0	0	0	0	0	1	0	0	2940	1792	62	5	714	5	CCNA2	4	122741887	Nonsense_Mutation	SNP	T	TCGA-05-4426-01A-01D-1265-08	9260080	122741887	68412389	37	38886											
WWC2	80014	broad.mit.edu	37	chr4	184182392	184182392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcctccactggctgaggCcccgaagtctgtggcctccc	10	18	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184182392	A	A	184182392	3	1	23	1	0	0	0	0	1	0	0	0	17539	739	26	3	1658	3	WWC2	4	184182392	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	61440505	184182392	6971884	38	38887											
FBXL7	23194	broad.mit.edu	37	chr5	15936591	15936591	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacctgcatcagcttgaccCgggaggcctccattaaactg	10	13	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15936591	T	T	15936591	3	4	23	1	0	0	0	0	1	0	0	0	5781	643	23	4	786	4	FBXL7	5	15936591	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08		15936591	164978669	39	38888											
SPEF2	79925	broad.mit.edu	37	chr5	35806794	35806794	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttaacttcatgttctcttCatttaactttgcagacctcc	4	11	3	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35806794	A	A	35806794	1	1	23	0	1	0	0	0	0	0	0	0	15153	841	29	3		3	SPEF2	5	35806794	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	19870203	35806794	145108466	40	38889											
TNPO1	3842	broad.mit.edu	37	chr5	72196889	72196889	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatcagtgtgaatcccagtGgcgtaatccaagtaagatgt	11	7	1	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72196889	A	A	72196889	3	1	23	1	0	0	0	0	1	0	0	0	16458	1348	47	4	2589	4	TNPO1	5	72196889	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	36390095	72196889	108718371	41	38890											
SLC22A5	6584	broad.mit.edu	37	chr5	131719782	131719782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagccccacttggtggaGcccattcctgctgccctttt	9	14	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131719782	T	T	131719782	1	4	23	0	1	0	0	0	0	0	0	0	14571	986	34	3		3	SLC22A5	5	131719782	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	59522893	131719782	49195478	42	38891											
IRF1	3659	broad.mit.edu	37	chr5	131823862	131823863	+	Intron	INS	-	TG	TG													ccctgacatctggcttggacINSacccatcttgaggctggctt					rs149828053	by1000genomes	TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	131823863	TG	TG	131823862	6	5	23	0	1	1	1	0	0	0	0	0	7897	493	17	0		0	IRF1	5	131823862	Intron	INS	-	TCGA-05-4426-01A-01D-1265-08	104080	131823862	49091398	43	38892											
SEC24A	10802	broad.mit.edu	37	chr5	134033092	134033092	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaccttatagtcttcTactctaaacatttagtaata	2	7	3	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134033092	C	C	134033092	1	2	23	0	1	0	0	0	0	0	0	0	14107	1537	53	5		5	SEC24A	5	134033092	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	2209230	134033092	46882168	44	38893											
PCDHGA4	56111	broad.mit.edu	37	chr5	140734993	140734993	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtaggacgcagcttttcGccctgaacccgcgcagcggc	14	14	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140734993	A	A	140734993	3	1	23	1	0	0	0	0	1	0	0	0	11650	1087	38	4	228	4	PCDHGA4	5	140734993	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	6701901	140734993	40180267	45	38894											
SH3TC2	79628	broad.mit.edu	37	chr5	148407707	148407707	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccggcccaggaggaagcagaGacgggcatgggcccaggtca	17	12	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148407707	C	C	148407707	3	2	23	1	0	0	0	0	1	0	0	0	14375	942	33	4	2306	4	SH3TC2	5	148407707	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	7672714	148407707	32507553	46	38895											
FOXI1	2299	broad.mit.edu	37	chr5	169533097	169533097	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcgtgcccagccctcagCggccctccttcgaggggggc	16	16	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169533097	T	T	169533097	3	4	23	1	0	0	0	0	1	0	0	0	6069	759	27	4	138	4	FOXI1	5	169533097	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	21125390	169533097	11382163	47	38896											
TLX3	30012	broad.mit.edu	37	chr5	170736693	170736693	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctctgccaagcgcgctAcccgccatgccctccgtgcc	9	22	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170736693	T	T	170736693	2	4	23	1	0	0	0	0	0	0	0	1	16085	378	14	5		5	TLX3	5	170736693	Silent	SNP	A	TCGA-05-4426-01A-01D-1265-08	1203596	170736693	10178567	48	38897											
ZNF346	23567	broad.mit.edu	37	chr5	176471427	176471427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaagaaccagtgctgccCcatctgtaacatgacctttt	7	12	1	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176471427	A	A	176471427	3	1	23	1	0	0	0	0	1	0	0	0	17986	623	22	2	424	2	ZNF346	5	176471427	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	5734734	176471427	4443833	49	38898											
BTNL8	79908	broad.mit.edu	37	chr5	180374508	180374508	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtctgtgggattgttttTcagatacctttttcgagcct	9	7	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180374508	C	C	180374508	1	2	23	0	1	0	0	0	0	0	0	0	1577	1798	62	5		5	BTNL8	5	180374508	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	3903081	180374508	540752	50	38899											
TRIM52	84851	broad.mit.edu	37	chr5	180687610	180687610	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catggcccccaccgcttcctCgtcctcctcctcctcccatt	4	23	0	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180687610	A	A	180687610	4	1	23	1	0	0	0	0	0	1	0	0	16652	893	31	3	696	3	TRIM52	5	180687610	Nonsense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	313102	180687610	227650	51	38900											
FOXC1	2296	broad.mit.edu	37	chr6	1612420	1612420	+	3'UTR	DEL	A	-	-													atcaaggcaaaatcgaaactAaaaaaaaaaaatccaattaa							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1612420	-	-	1612420	6	5	23	0	1	1	0	1	0	0	0	0	6052	377	13	0		0	FOXC1	6	1612420	3'UTR	DEL	A	TCGA-05-4426-01A-01D-1265-08		1612420	169502647	52	38901											
KIF13A	63971	broad.mit.edu	37	chr6	17764530	17764531	+	Frame_Shift_Del	DEL	CT	-	-													aaaccatcaaaatcttttccCtctgacactcccataaattc					rs9371018	by1000genomes	TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17764531	-	-	17764530	7	5	23	1	0	1	0	1	0	0	0	0	8344	680	24	0	217	0	KIF13A	6	17764530	Frame_Shift_Del	DEL	CT	TCGA-05-4426-01A-01D-1265-08	16152110	17764530	153350537	53	38902											
HIST1H3E	8353	broad.mit.edu	37	chr6	26225700	26225700	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttggtggggcttttcgaGgacaccaacctgtgcgctat	12	10	0	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26225700	A	A	26225700	2	1	23	1	0	0	0	0	0	0	0	1	7226	991	35	4		4	HIST1H3E	6	26225700	Silent	SNP	G	TCGA-05-4426-01A-01D-1265-08	8461170	26225700	144889367	54	38903											
GABBR1	2550	broad.mit.edu	37	chr6	29541769	29541769	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggactctctttgtagtTgtcttcacttcctacctcct	6	12	3	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29541769	A	A	29541769	1	1	23	0	1	0	0	0	0	0	0	0	6215	1827	63	5		5	GABBR1	6	29541769	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	3316069	29541769	141573298	55	38904											
VARS2	57176	broad.mit.edu	37	chr6	30884943	30884943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcggggttgctgtaccGgaaccatcagcttgtcaact	12	11	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30884943	T	T	30884943	3	4	23	1	0	0	0	0	1	0	0	0	17251	1116	39	1	939	1	VARS2	6	30884943	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	1343174	30884943	140230124	56	38905											
HLA-B	3106	broad.mit.edu	37	chr6	31323940	31323940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggctccccactgcccctgGtaccagcgcgctccagcttg	10	18	0	0	rs45548537		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323940	A	A	31323940	1	1	23	0	1	0	0	0	0	0	0	0	7263	1276	44	4		4	HLA-B	6	31323940	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	438997	31323940	139791127	57	38906											
STK38	11329	broad.mit.edu	37	chr6	36467468	36467468	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcaattgcaggatgccagTaagcccaagaatggagtggg	14	7	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36467468	A	A	36467468	1	1	23	0	1	0	0	0	0	0	0	0	15421	1653	57	5		5	STK38	6	36467468	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	5143528	36467468	134647599	58	38907											
PKHD1	5314	broad.mit.edu	37	chr6	51503744	51503744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccatcttgagtttctgcCtgggtgcaccctacaaaaaa	7	11	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51503744	A	A	51503744	3	1	23	1	0	0	0	0	1	0	0	0	12066	680	24	2	831	2	PKHD1	6	51503744	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	15036276	51503744	119611323	59	38908											
NR2E1	7101	broad.mit.edu	37	chr6	108508779	108508779	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatataccggggaatgtgtAgccttcaggaaaaaaatgcc	11	8	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108508779	T	T	108508779	1	4	23	0	1	0	0	0	0	0	0	0	10720	435	15	5		5	NR2E1	6	108508779	3'UTR	SNP	A	TCGA-05-4426-01A-01D-1265-08	57005035	108508779	62606288	60	38909											
GRM1	2911	broad.mit.edu	37	chr6	146720225	146720225	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaccaatcgtattgcaCgcatcctggctggcagcaag	9	12	0	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146720225	T	T	146720225	3	4	23	1	0	0	0	0	1	0	0	0	6862	536	19	4	2076	4	GRM1	6	146720225	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	38211446	146720225	24394842	61	38910											
CCDC129	223075	broad.mit.edu	37	chr7	31617968	31617968	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaagggcagaactcagaagGagaacttatttcagactaac	9	8	3	4			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31617968	C	C	31617968	3	2	23	1	0	0	0	0	1	0	0	0	2790	1175	41	4	1116	4	CCDC129	7	31617968	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08		31617968	127520695	62	38911											
PHKG1	5260	broad.mit.edu	37	chr7	56154503	56154503	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacccaggtttccaaagccgGcagcctgaccccaggggctg	12	15	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56154503	A	A	56154503	1	1	23	0	1	0	0	0	0	0	0	0	11941	1218	42	4		4	PHKG1	7	56154503	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	24536535	56154503	102984160	63	38912											
ASL	435	broad.mit.edu	37	chr7	65554160	65554160	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctgggcgtgtgtttgggCgggtgagcaaggcaggggga	23	5	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65554160	T	T	65554160	3	4	23	1	0	0	0	0	1	0	0	0	1048	759	27	4	958	4	ASL	7	65554160	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	9399657	65554160	93584503	64	38913											
FKBP6	8468	broad.mit.edu	37	chr7	72685746	72685746	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggtattgaaagaaaaaaGgggaaaaaagtggataaata	11	1	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72685746	A	A	72685746	1	1	23	0	1	0	0	0	0	0	0	0	5969	1015	35	4		4	FKBP6	7	72685746	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	7131586	72685746	86452917	65	38914											
PMPCB	9512	broad.mit.edu	37	chr7	102939063	102939063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtacacaggctgctaccCaagttgttctgaatgttcct	9	10	1	1	rs11538298		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102939063	A	A	102939063	3	1	23	1	0	0	0	0	1	0	0	0	12236	595	21	2	154	2	PMPCB	7	102939063	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	30253317	102939063	56199600	66	38915											
ING3	54556	broad.mit.edu	37	chr7	120608222	120608222	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaatagaaataacgggatGtgaacaaatagttttctaac	7	6	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120608222	A	A	120608222	1	1	23	0	1	0	0	0	0	0	0	0	7807	1392	48	4		4	ING3	7	120608222	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	17669159	120608222	38530441	67	38916											
MGAM	8972	broad.mit.edu	37	chr7	141757914	141757914	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagttagttgtctagcttgGggcacagaaaaatattctta	9	5	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141757914	A	A	141757914	1	1	23	0	1	0	0	0	0	0	0	0	9634	1247	43	4		4	MGAM	7	141757914	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	21149692	141757914	17380749	68	38917											
ZNF596	169270	broad.mit.edu	37	chr8	196465	196465	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcctttatttatatttacCactttgctcaacctaaatga	3	9	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196465	A	A	196465	1	1	23	0	1	0	0	0	0	0	0	0	18153	609	21	2		2	ZNF596	8	196465	3'UTR	SNP	C	TCGA-05-4426-01A-01D-1265-08		196465	146167557	69	38918											
NEFM	4741	broad.mit.edu	37	chr8	24774551	24774551	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatttttactatgtcttAtgttcttggattttctcctt	5	6	3	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24774551	T	T	24774551	1	4	23	0	1	0	0	0	0	0	0	0	10411	464	16	5		5	NEFM	8	24774551	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	24578086	24774551	121589471	70	38919											
DENND3	22898	broad.mit.edu	37	chr8	142176386	142176386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacccacaggcgcatggtgGtcagcatgcccaacctgcag	11	15	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142176386	A	A	142176386	3	1	23	1	0	0	0	0	1	0	0	0	4472	1261	44	4	1453	4	DENND3	8	142176386	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	117401835	142176386	4187636	71	38920											
CDKN2A	1029	broad.mit.edu	37	chr9	21971209	21971209	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgctgcccatcatcatgaccTgccagagagaacagaatggt	10	12	2	4			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21971209	A	A	21971209	5	1	23	1	0	0	0	0	0	0	1	0	3191	1594	55	5	329	5	CDKN2A	9	21971209	Splice_Site	SNP	T	TCGA-05-4426-01A-01D-1265-08		21971209	119242222	72	38921											
TMEM2	23670	broad.mit.edu	37	chr9	74329728	74329728	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtagtagtaataaatgataAaataggaaaagagtctcatg	9	2	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74329728	T	T	74329728	1	4	23	0	1	0	0	0	0	0	0	0	16244	29	1	5		5	TMEM2	9	74329728	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	52358519	74329728	66883703	73	38922											
SETX	23064	broad.mit.edu	37	chr9	135140265	135140265	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttctctgcagcacaggcttGagtttcagaatcttcactgc	8	12	4	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135140265	T	T	135140265	2	4	23	1	0	0	0	0	0	0	0	1	14254	1277	45	3		3	SETX	9	135140265	Silent	SNP	G	TCGA-05-4426-01A-01D-1265-08	60810537	135140265	6073166	74	38923											
EDF1	8721	broad.mit.edu	37	chr9	139757767	139757767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccttctgcgtaagcccCttgctctgccgaccttgctg	10	15	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139757767	A	A	139757767	3	1	23	1	0	0	0	0	1	0	0	0	4954	680	24	2	229	2	EDF1	9	139757767	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	4617502	139757767	1455664	75	38924											
PFKP	5214	broad.mit.edu	37	chr10	3178698	3178698	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggcccctcatgaaaatccTggccaagtacaaggccagct	9	14	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3178698	C	C	3178698	3	2	23	1	0	0	0	0	1	0	0	0	11861	1580	55	5	2368	5	PFKP	10	3178698	Missense_Mutation	SNP	T	TCGA-05-4426-01A-01D-1265-08		3178698	132356049	76	38925											
JMJD1C	221037	broad.mit.edu	37	chr10	64982076	64982076	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgattacaggtggaaatctAcaagacagtaaagatgcact	9	6	1	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64982076	G	G	64982076	1	3	23	0	1	0	0	0	0	0	0	0	8020	406	14	5		5	JMJD1C	10	64982076	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	61803378	64982076	70552671	77	38926											
C10orf120	399814	broad.mit.edu	37	chr10	124459311	124459311	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccattctctgatcatactcCggcaataagctaggacggga	9	11	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124459311	T	T	124459311	1	4	23	0	1	0	0	0	0	0	0	0	1601	667	23	4		4	C10orf120	10	124459311	5'UTR	SNP	C	TCGA-05-4426-01A-01D-1265-08	59477235	124459311	11075436	78	38927											
FAM196A	642938	broad.mit.edu	37	chr10	128974461	128974461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttctcccccagctggcCcgaggacagctgtgtgtccc	11	18	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128974461	A	A	128974461	3	1	23	1	0	0	0	0	1	0	0	0	5575	623	22	2	1252	2	FAM196A	10	128974461	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	4515150	128974461	6560286	79	38928											
DEAF1	10522	broad.mit.edu	37	chr11	678622	678622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaatgaatcccatttcaCttaggaattctttcattgga	5	9	3	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	678622	A	A	678622	1	1	23	0	1	0	0	0	0	0	0	0	4413	580	20	3		3	DEAF1	11	678622	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08		678622	134327894	80	38929											
COPB1	1315	broad.mit.edu	37	chr11	14502761	14502761	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taattctttaatcaataacaAaaccactagtggtggaagaa	6	6	2	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14502761	T	T	14502761	1	4	23	0	1	0	0	0	0	0	0	0	3760	29	1	5		5	COPB1	11	14502761	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	13824139	14502761	120503755	81	38930											
CCDC73	493860	broad.mit.edu	37	chr11	32674640	32674643	+	Intron	DEL	AGAC	-	-													atactaaaacacagatagatAgacagacagacagacagata							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32674643	-	-	32674640	6	5	23	0	1	1	0	1	0	0	0	0	2874	435	15	0		0	CCDC73	11	32674640	Intron	DEL	AGAC	TCGA-05-4426-01A-01D-1265-08	18171879	32674640	102331876	82	38931											
OR4B1	119765	broad.mit.edu	37	chr11	48238768	48238768	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatatgaacattatcagtcGtcaactgtgtcaccttctgg	7	9	4	1	rs149306992		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48238768	A	A	48238768	3	1	23	1	0	0	0	0	1	0	0	0	11138	1145	40	4	409	4	OR4B1	11	48238768	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	15564128	48238768	86767748	83	38932											
OR4A16	81327	broad.mit.edu	37	chr11	55110931	55110931	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgatagacttactctgTgataaaatcgctatttcctt	6	7	1	4			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55110931	C	C	55110931	2	2	23	1	0	0	0	0	0	0	0	1	11135	1702	59	5		5	OR4A16	11	55110931	Silent	SNP	T	TCGA-05-4426-01A-01D-1265-08	6872163	55110931	79895585	84	38933											
MS4A4A	51338	broad.mit.edu	37	chr11	60073818	60073818	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgagcccagctgaagtaTgtccttgactcaggatctta	10	10	3	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60073818	G	G	60073818	1	3	23	0	1	0	0	0	0	0	0	0	9956	1479	51	5		5	MS4A4A	11	60073818	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	4962887	60073818	74932698	85	38934											
DAGLA	747	broad.mit.edu	37	chr11	61503738	61503738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttctgttcctgcccacCcagggtatggtcctctcagc	9	16	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61503738	A	A	61503738	1	1	23	0	1	0	0	0	0	0	0	0	4259	638	22	2		2	DAGLA	11	61503738	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	1429920	61503738	73502778	86	38935											
PCNXL3	399909	broad.mit.edu	37	chr11	65403699	65403699	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgggaacgtggatgattcAgactgtagtgggggcggtgg	21	5	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65403699	G	G	65403699	2	3	23	1	0	0	0	0	0	0	0	1	11687	175	7	5		5	PCNXL3	11	65403699	Silent	SNP	A	TCGA-05-4426-01A-01D-1265-08	3899961	65403699	69602817	87	38936											
CCND1	595	broad.mit.edu	37	chr11	69462817	69462817	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcggggagcgtggtggcCgcagtgcaaggcctgaacct	18	11	0	1	rs146267501		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69462817	A	A	69462817	2	1	23	1	0	0	0	0	0	0	0	1	2946	639	23	1		1	CCND1	11	69462817	Silent	SNP	C	TCGA-05-4426-01A-01D-1265-08	4059118	69462817	65543699	88	38937											
FAM168A	23201	broad.mit.edu	37	chr11	73291524	73291524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatggagatgccaaaaCagaccagggacagaaagctg	12	7	0	4			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73291524	A	A	73291524	1	1	23	0	1	0	0	0	0	0	0	0	5530	493	17	3		3	FAM168A	11	73291524	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	3828707	73291524	61714992	89	38938											
CCDC83	220047	broad.mit.edu	37	chr11	85606317	85606317	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaattttctttttttttTttttttttttttttaaagaa	1	1	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85606317	C	C	85606317	1	2	23	0	1	0	0	0	0	0	0	0	2885	1856	64	5		5	CCDC83	11	85606317	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08	12314793	85606317	49400199	90	38939											
PRSS23	11098	broad.mit.edu	37	chr11	86532787	86532787	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatttcttcaaagtgttcGtcaggccaattataaaaatc	5	8	4	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86532787	A	A	86532787	1	1	23	0	1	0	0	0	0	0	0	0	12726	1160	40	4		4	PRSS23	11	86532787	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	926470	86532787	48473729	91	38940											
EXPH5	23086	broad.mit.edu	37	chr11	108384669	108384669	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcagaagaaacattatggCcatgaatggctgatacacta	9	7	1	4			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108384669	T	T	108384669	3	4	23	1	0	0	0	0	1	0	0	0	5365	739	26	4	4408	4	EXPH5	11	108384669	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	21851882	108384669	26621847	92	38941											
GYS2	2998	broad.mit.edu	37	chr12	21729049	21729049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgcaagacaggacaatGtatttgcactctgaggatat	10	7	2	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21729049	T	T	21729049	1	4	23	0	1	0	0	0	0	0	0	0	6978	1392	48	3		3	GYS2	12	21729049	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08		21729049	112122846	93	38942											
DIP2B	57609	broad.mit.edu	37	chr12	51074576	51074576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattttggttttagggagGtggtgtttattgttttctaa	13	1	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51074576	T	T	51074576	1	4	23	0	1	0	0	0	0	0	0	0	4568	1276	44	3		3	DIP2B	12	51074576	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	29345527	51074576	82777319	94	38943											
ITGB7	3695	broad.mit.edu	37	chr12	53586306	53586306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccagtcctgaaggcccCacactctgcacagtccctgt	10	16	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53586306	A	A	53586306	3	1	23	1	0	0	0	0	1	0	0	0	7970	594	21	2	445	2	ITGB7	12	53586306	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	2511730	53586306	80265589	95	38944											
HCFC2	29915	broad.mit.edu	37	chr12	104496730	104496730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctgttttttccccccccCttcaagaatgttgaaggtat	6	12	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104496730	T	T	104496730	1	4	23	0	1	0	0	0	0	0	0	0	7059	696	24	4		4	HCFC2	12	104496730	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	50910424	104496730	29355165	96	38945											
SELPLG	6404	broad.mit.edu	37	chr12	109017519	109017548	+	In_Frame_Del	DEL	GGCCTGTGGGTTGAGTGGTCTGTGCTTCCG	-	-													tgcagtggtctgtgcctccaGgcctgtgggttgagtggtct					rs138529391	byFrequency;by1000genomes	TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109017548	-	-	109017519	7	5	23	1	0	1	0	1	0	0	0	0	14133	991	35	0	677	0	SELPLG	12	109017519	In_Frame_Del	DEL	GGCCTGTGGGTTGAGTGGTCTGTGCTTCCG	TCGA-05-4426-01A-01D-1265-08	4520789	109017519	24834376	97	38946											
PABPC3	5042	broad.mit.edu	37	chr13	25671090	25671090	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaagctgtagatgagatgAatggaaaggagctcaatgga	14	3	1	4			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25671090	G	G	25671090	3	3	23	1	0	0	0	0	1	0	0	0	11459	246	9	5	756	5	PABPC3	13	25671090	Missense_Mutation	SNP	A	TCGA-05-4426-01A-01D-1265-08		25671090	89498788	98	38947											
FAM124A	220108	broad.mit.edu	37	chr13	51825614	51825614	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccccaggtgagctttcCgttgaagaggcgcaggaccc	14	13	0	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51825614	A	A	51825614	2	1	23	1	0	0	0	0	0	0	0	1	5471	639	23	1		1	FAM124A	13	51825614	Silent	SNP	C	TCGA-05-4426-01A-01D-1265-08	26154524	51825614	63344264	99	38948											
PCDH17	27253	broad.mit.edu	37	chr13	58208287	58208287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgaacggggccatctacgCcctgcgctcctttaacttcg	9	16	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58208287	A	A	58208287	3	1	23	1	0	0	0	0	1	0	0	0	11606	739	26	3	1609	3	PCDH17	13	58208287	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	6382673	58208287	56961591	100	38949											
UGGT2	55757	broad.mit.edu	37	chr13	96529418	96529418	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgttgggattacaggcttGagccactgcgccaggccaat	13	10	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96529418	T	T	96529418	1	4	23	0	1	0	0	0	0	0	0	0	17068	1305	45	3		3	UGGT2	13	96529418	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	38321131	96529418	18640460	101	38950											
COL4A2	1284	broad.mit.edu	37	chr13	111119377	111119377	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggctcatcttttctcctttCtgtccccaggttgcatagga	9	12	4	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111119377	A	A	111119377	1	1	23	0	1	0	0	0	0	0	0	0	3722	928	32	3		3	COL4A2	13	111119377	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	14589959	111119377	4050501	102	38951											
NAA30	122830	broad.mit.edu	37	chr14	57863604	57863604	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggcattggtaagaaaaaTattattttatggaaagaatg	9	1	0	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57863604	G	G	57863604	1	3	23	0	1	0	0	0	0	0	0	0	10216	1421	49	5		5	NAA30	14	57863604	Intron	SNP	T	TCGA-05-4426-01A-01D-1265-08		57863604	49485936	103	38952											
ARID4A	5926	broad.mit.edu	37	chr14	58832050	58832050	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagggaaaagtaagtgtttAtatgaaaccaaaaatcaaaa	7	4	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58832050	T	T	58832050	1	4	23	0	1	0	0	0	0	0	0	0	921	464	16	5		5	ARID4A	14	58832050	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	968446	58832050	48517490	104	38953											
VIPAR	63894	broad.mit.edu	37	chr14	77895357	77895357	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggggactcacatcaatgaCgacatcatggcacttgaact	9	10	3	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77895357	T	T	77895357	3	4	23	1	0	0	0	0	1	0	0	0	17295	536	19	4	145	4	VIPAR	14	77895357	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	19063307	77895357	29454183	105	38954											
SERPINA4	5267	broad.mit.edu	37	chr14	95035754	95035754	+	Frame_Shift_Del	DEL	A	-	-													tttccacaaggccaccttggAcgtggatgaggctggcaccg							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95035754	-	-	95035754	7	5	23	1	0	1	0	1	0	0	0	0	14204	275	10	0	1120	0	SERPINA4	14	95035754	Frame_Shift_Del	DEL	A	TCGA-05-4426-01A-01D-1265-08	17140397	95035754	12313786	106	38955											
DISP2	85455	broad.mit.edu	37	chr15	40657415	40657415	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagagcgctgtccggcctCggagaatggtggagcccctg	17	11	0	2	rs141422641	byFrequency	TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40657415	A	A	40657415	2	1	23	1	0	0	0	0	0	0	0	1	4580	875	31	3		3	DISP2	15	40657415	Silent	SNP	C	TCGA-05-4426-01A-01D-1265-08		40657415	61873977	107	38956											
UNC13C	440279	broad.mit.edu	37	chr15	54825193	54825193	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcaaatggaaacaccacAtctaataagaacagtgcagc	8	9	1	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54825193	T	T	54825193	2	4	23	1	0	0	0	0	0	0	0	1	17112	204	8	5		5	UNC13C	15	54825193	Silent	SNP	A	TCGA-05-4426-01A-01D-1265-08	14167778	54825193	47706199	108	38957											
CCPG1	9236	broad.mit.edu	37	chr15	55652008	55652008	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaattatctgtctaaattCatccatccttataggattca	4	8	4	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55652008	T	T	55652008	3	4	23	1	0	0	0	0	1	0	0	0	2968	835	29	4	314	4	CCPG1	15	55652008	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	826815	55652008	46879384	109	38958											
ALPK3	57538	broad.mit.edu	37	chr15	85410632	85410632	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacagaatgccctctgggcGtcttctcagggtgtaaaatg	13	9	3	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85410632	A	A	85410632	1	1	23	0	1	0	0	0	0	0	0	0	546	1160	40	4		4	ALPK3	15	85410632	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	29758624	85410632	17120760	110	38959											
CREBBP	1387	broad.mit.edu	37	chr16	3779782	3779782	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgactgtggctcgccctGgctgctgccctcgtcatcca	10	16	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3779782	A	A	3779782	4	1	23	1	0	0	0	0	0	1	0	0	3893	1357	47	4	2066	4	CREBBP	16	3779782	Nonsense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08		3779782	86574971	111	38960											
USP7	7874	broad.mit.edu	37	chr16	9009171	9009171	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcttctcttctatcagaccGatagtctacttctttacact	3	12	6	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009171	A	A	9009171	3	1	23	1	0	0	0	0	1	0	0	0	17215	1057	37	4	2378	4	USP7	16	9009171	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	5229389	9009171	81345582	112	38961											
SRCAP	10847	broad.mit.edu	37	chr16	30723536	30723536	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactttctcatgtccccacaAcaaatgcctcatttccattg	4	14	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30723536	G	G	30723536	1	3	23	0	1	0	0	0	0	0	0	0	15253	58	2	5		5	SRCAP	16	30723536	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	21714365	30723536	59631217	113	38962											
CES3	23491	broad.mit.edu	37	chr16	67000101	67000101	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagaaggctgcaaggtggGgctgagtggctgagagggag	22	5	0	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67000101	T	T	67000101	1	4	23	0	1	0	0	0	0	0	0	0	3301	1247	43	2		2	CES3	16	67000101	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	36276565	67000101	23354652	114	38963											
CALB2	794	broad.mit.edu	37	chr16	71418845	71418845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttccaggggtggcctgGgccgtgtggtttcttcctgc	15	11	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71418845	T	T	71418845	1	4	23	0	1	0	0	0	0	0	0	0	2600	1247	43	2		2	CALB2	16	71418845	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	4418744	71418845	18935908	115	38964											
KIAA0182	23199	broad.mit.edu	37	chr16	85699584	85699584	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactttgtctctaaaagaaCcagccacgcagcaagcctct	6	14	3	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85699584	T	T	85699584	3	4	23	1	0	0	0	0	1	0	0	0	8229	507	18	4	2811	4	KIAA0182	16	85699584	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	14280739	85699584	4655169	116	38965											
ARRB2	409	broad.mit.edu	37	chr17	4621224	4621224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaaggtgcagttcgcccCggagaaacccggcccccagc	12	17	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4621224	T	T	4621224	3	4	23	1	0	0	0	0	1	0	0	0	985	652	23	4	557	4	ARRB2	17	4621224	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08		4621224	76573986	117	38966											
TP53	7157	broad.mit.edu	37	chr17	7578466	7578466	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccatggcgcggacgcggGtgccgggcgggggtgtggaa	23	9	0	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578466	A	A	7578466	3	1	23	1	0	0	0	0	1	0	0	0	16505	1261	44	4	834	4	TP53	17	7578466	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	2957242	7578466	73616744	118	38967											
CCDC42	146849	broad.mit.edu	37	chr17	8644878	8644878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccgctggtgctccagccGcagcgccaccatctcctgct	10	19	1	0	rs148149350	byFrequency;by1000genomes	TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8644878	T	T	8644878	2	4	23	1	0	0	0	0	0	0	0	1	2841	1086	38	3		3	CCDC42	17	8644878	Silent	SNP	G	TCGA-05-4426-01A-01D-1265-08	1066412	8644878	72550332	119	38968											
MFSD6L	162387	broad.mit.edu	37	chr17	8701497	8701497	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacctcgggggccactggtCatcaggaagcagtccagctg	13	13	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8701497	A	A	8701497	3	1	23	1	0	0	0	0	1	0	0	0	9629	826	29	3	822	3	MFSD6L	17	8701497	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	56619	8701497	72493713	120	38969											
MYO15A	51168	broad.mit.edu	37	chr17	18043881	18043915	+	Frame_Shift_Del	DEL	CCTGGGCAAGAGCAGCTCCGTCACTCGGCTCTACA	-	-													ccacaggctgcccctcagcgCctgggcaagagcagctccgt							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18043915	-	-	18043881	7	5	23	1	0	1	0	1	0	0	0	0	10157	726	26	0	5332	0	MYO15A	17	18043881	Frame_Shift_Del	DEL	CCTGGGCAAGAGCAGCTCCGTCACTCGGCTCTACA	TCGA-05-4426-01A-01D-1265-08	9342384	18043881	63151329	121	38970											
C17orf78	284099	broad.mit.edu	37	chr17	35734872	35734872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggatcttcccaaaagaCgtgagaagcatcagagaatt	10	9	2	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35734872	A	A	35734872	3	1	23	1	0	0	0	0	1	0	0	0	1900	535	19	3	120	3	C17orf78	17	35734872	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	17690991	35734872	45460338	122	38971											
KRTAP9-2	83899	broad.mit.edu	37	chr17	39383064	39383064	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgccagccttgctgccGcccaacttgctgtcaaaaca	8	16	1	0	rs140426018		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39383064	A	A	39383064	3	1	23	1	0	0	0	0	1	0	0	0	8645	1087	38	4	160	4	KRTAP9-2	17	39383064	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	3648192	39383064	41812146	123	38972											
PITPNC1	26207	broad.mit.edu	37	chr17	65688807	65688807	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccctgctgccttcttccGtccgcagtgcgccttctagt	8	18	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65688807	A	A	65688807	3	1	23	1	0	0	0	0	1	0	0	0	12044	1145	40	4	959	4	PITPNC1	17	65688807	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	26305743	65688807	15506403	124	38973											
USP14	9097	broad.mit.edu	37	chr18	197634	197634	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatgctaatgaatgttggAtacaaatgatgcgagtattg	12	3	0	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197634	C	C	197634	3	2	23	1	0	0	0	0	1	0	0	0	17171	333	12	5	643	5	USP14	18	197634	Missense_Mutation	SNP	A	TCGA-05-4426-01A-01D-1265-08		197634	77879614	125	38974											
TIMM44	10469	broad.mit.edu	37	chr19	7998482	7998482	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagggtgggccctggggtGagcggcggcgccagggccac	21	11	0	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7998482	A	A	7998482	1	1	23	0	1	0	0	0	0	0	0	0	16035	1305	45	4		4	TIMM44	19	7998482	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08		7998482	51130501	126	38975											
CYP4F8	11283	broad.mit.edu	37	chr19	15730354	15730354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccctgaagccctggctgGgtaagtaactgtaggtggac	14	9	0	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15730354	T	T	15730354	3	4	23	1	0	0	0	0	1	0	0	0	4224	1246	43	2	407	2	CYP4F8	19	15730354	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	7731872	15730354	43398629	127	38976											
UBA52	7311	broad.mit.edu	37	chr19	18684357	18684357	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgaagaacgtttgttatCttctacctcagttggccttt	7	9	4	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18684357	T	T	18684357	1	4	23	0	1	0	0	0	0	0	0	0	16957	928	32	4		4	UBA52	19	18684357	Intron	SNP	C	TCGA-05-4426-01A-01D-1265-08	2954003	18684357	40444626	128	38977											
ZNF573	126231	broad.mit.edu	37	chr19	38283287	38283288	+	Intron	DEL	AA	-	-													atgacattaatgctgataagAatatctcttctgcacagatt							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38283288	-	-	38283287	6	5	23	0	1	1	0	1	0	0	0	0	18132	261	9	0		0	ZNF573	19	38283287	Intron	DEL	AA	TCGA-05-4426-01A-01D-1265-08	19598930	38283287	20845696	129	38978											
NTN5	126147	broad.mit.edu	37	chr19	49173881	49173881	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctggtgtggagtggaaggtCaccctttcagggccccctaa	13	12	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49173881	A	A	49173881	2	1	23	1	0	0	0	0	0	0	0	1	10798	813	29	3		3	NTN5	19	49173881	Silent	SNP	C	TCGA-05-4426-01A-01D-1265-08	10890594	49173881	9955102	130	38979											
ZNF845	91664	broad.mit.edu	37	chr19	53855879	53855879	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagtttcaaatcaaaccttCaaagacataggagaattcat	5	8	5	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53855879	G	G	53855879	3	3	23	1	0	0	0	0	1	0	0	0	18320	827	29	4	1961	4	ZNF845	19	53855879	Missense_Mutation	SNP	C	TCGA-05-4426-01A-01D-1265-08	4681998	53855879	5273104	131	38980											
FAM110A	83541	broad.mit.edu	37	chr20	820168	820168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacccagccccagcctcGgctttcttgtcagcaccagg	10	17	2	1	rs7262704		TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	820168	T	T	820168	1	4	23	0	1	0	0	0	0	0	0	0	5442	1131	39	1		1	FAM110A	20	820168	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08		820168	62205352	132	38981											
STK35	140901	broad.mit.edu	37	chr20	2097560	2097560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccccatcctcaaagtggccGactttggactaagcaaggtc	9	14	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2097560	T	T	2097560	3	4	23	1	0	0	0	0	1	0	0	0	15419	1058	37	3	1151	3	STK35	20	2097560	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	1277392	2097560	60927960	133	38982											
RALGAPA2	57186	broad.mit.edu	37	chr20	20582431	20582431	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcacatctgggtggctccGccagctgagagaaaaggacc	14	11	2	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20582431	T	T	20582431	2	4	23	1	0	0	0	0	0	0	0	1	13122	1086	38	3		3	RALGAPA2	20	20582431	Silent	SNP	G	TCGA-05-4426-01A-01D-1265-08	18484871	20582431	42443089	134	38983											
PTPRT	11122	broad.mit.edu	37	chr20	41408951	41408951	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatatcacctgcaacacacAgggcgggagtcaatttcaca	8	11	3	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41408951	G	G	41408951	1	3	23	0	1	0	0	0	0	0	0	0	12920	203	7	5		5	PTPRT	20	41408951	Intron	SNP	A	TCGA-05-4426-01A-01D-1265-08	20826520	41408951	21616569	135	38984											
CSE1L	1434	broad.mit.edu	37	chr20	47682732	47682732	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactgctttgcttttaggttGaagatgaaccaaacaaaatt	7	6	0	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47682732	A	A	47682732	3	1	23	1	0	0	0	0	1	0	0	0	3964	1291	45	4	242	4	CSE1L	20	47682732	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	6273781	47682732	15342788	136	38985											
SLC2A4RG	56731	broad.mit.edu	37	chr20	62373320	62373320	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggatgggacctggccagtGaccagtcctctccgtccacc	13	15	1	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62373320	A	A	62373320	3	1	23	1	0	0	0	0	1	0	0	0	14661	1290	45	4	504	4	SLC2A4RG	20	62373320	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	14690588	62373320	652200	137	38986											
DGCR2	9993	broad.mit.edu	37	chr22	19112461	19112461	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaactctcctcagccattAaatactgccacgacctggac	5	16	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19112461	T	T	19112461	1	4	23	0	1	0	0	0	0	0	0	0	4501	377	13	5		5	DGCR2	22	19112461	5'Flank	SNP	A	TCGA-05-4426-01A-01D-1265-08		19112461	32192105	138	38987											
CRKL	1399	broad.mit.edu	37	chr22	21272333	21272333	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcgccacggtatgttcctCgtccgcgattcttccacctg	9	16	1	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21272333	A	A	21272333	2	1	23	1	0	0	0	0	0	0	0	1	3917	871	31	3		3	CRKL	22	21272333	Silent	SNP	C	TCGA-05-4426-01A-01D-1265-08	2159872	21272333	30032233	139	38988											
GAL3ST1	9514	broad.mit.edu	37	chr22	30951309	30951309	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagaggtgggagtccagcatGttccaggcggtggcgcgccc	17	11	0	1			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30951309	C	C	30951309	3	2	23	1	0	0	0	0	1	0	0	0	6259	1368	48	4	372	4	GAL3ST1	22	30951309	Missense_Mutation	SNP	G	TCGA-05-4426-01A-01D-1265-08	9678976	30951309	20353257	140	38989											
POLDIP3	84271	broad.mit.edu	37	chr22	42988085	42988085	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggccccacacacacagaaAagctcctgcacacaacaaga	7	15	0	2			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42988085	C	C	42988085	2	2	23	1	0	0	0	0	0	0	0	1	12290	1	1	5		5	POLDIP3	22	42988085	Silent	SNP	A	TCGA-05-4426-01A-01D-1265-08	12036776	42988085	8316481	141	38990											
CELSR1	9620	broad.mit.edu	37	chr22	46759224	46759224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccaaggttgtcacacgGgggggcaggatcaccccatc	15	13	2	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46759224	T	T	46759224	1	4	23	0	1	0	0	0	0	0	0	0	3251	1247	43	2		2	CELSR1	22	46759224	Intron	SNP	G	TCGA-05-4426-01A-01D-1265-08	3771139	46759224	4545342	142	38991											
NONO	4841	broad.mit.edu	37	chrX	70517741	70517741	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcggcggcagcaagaagaaAtgatgcggcgacagcaggaa	16	8	0	3			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70517741	C	C	70517741	3	2	23	1	0	0	0	0	1	0	0	0	10629	101	4	5	1110	5	NONO	23	70517741	Missense_Mutation	SNP	A	TCGA-05-4426-01A-01D-1265-08		70517741	84752819	143	38992											
ATG4A	115201	broad.mit.edu	37	chrX	107377546	107377547	+	Intron	INS	-	T	T													gatcttttgctaacatgttaINStttttttccacattaaaaac							TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107377547	T	T	107377546	6	5	23	0	1	1	1	0	0	0	0	0	1100	464	16	0		0	ATG4A	23	107377546	Intron	INS	-	TCGA-05-4426-01A-01D-1265-08	36859805	107377546	47893014	144	38993											
RBMX	27316	broad.mit.edu	37	chrX	135958803	135958803	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgttaaaattcatggaatAtccaccgtcatctgcatcaa	5	10	4	0			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135958803	G	G	135958803	3	3	23	1	0	0	0	0	1	0	0	0	13259	449	16	5	850	5	RBMX	23	135958803	Missense_Mutation	SNP	A	TCGA-05-4426-01A-01D-1265-08	28581257	135958803	19311757	145	38994											
AGRN	375790	broad.mit.edu	37	chr1	981164	981164	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgactgtgagcagatgaCggggctgtgctcgtgtaagc	17	7	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	981164	T	T	981164	3	4	24	1	0	0	0	0	1	0	0	0	397	536	19	4	2646	4	AGRN	1	981164	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08		981164	248269457	1	38995											
MMEL1	79258	broad.mit.edu	37	chr1	2523404	2523404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagaagagctgctcatgGgtgagatccaggccgggcag	16	8	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2523404	T	T	2523404	2	4	24	1	0	0	0	0	0	0	0	1	9739	1219	43	2		2	MMEL1	1	2523404	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1542240	2523404	246727217	2	38996											
CCDC27	148870	broad.mit.edu	37	chr1	3669111	3669111	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatccacgggaaaagccGggcctgtcctcattcaggtc	12	12	2	1	rs145565766	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3669111	T	T	3669111	2	4	24	1	0	0	0	0	0	0	0	1	2828	1103	39	1		1	CCDC27	1	3669111	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1145707	3669111	245581510	3	38997											
CCDC27	148870	broad.mit.edu	37	chr1	3679923	3679923	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggagaagggcctcctcCctggccgagtcgtttgagga	14	13	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3679923	A	A	3679923	2	1	24	1	0	0	0	0	0	0	0	1	2828	610	22	2		2	CCDC27	1	3679923	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	10812	3679923	245570698	4	38998											
AJAP1	55966	broad.mit.edu	37	chr1	4830052	4830052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggggactaccggggtccCtgggtggtgaatacagaaag	17	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4830052	T	T	4830052	1	4	24	0	1	0	0	0	0	0	0	0	438	696	24	4		4	AJAP1	1	4830052	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1150129	4830052	244420569	5	38999											
AJAP1	55966	broad.mit.edu	37	chr1	4834406	4834406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaagaagccagtccccaCcacaggcctgccccggcttg	9	18	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4834406	A	A	4834406	1	1	24	0	1	0	0	0	0	0	0	0	438	522	18	3		3	AJAP1	1	4834406	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4354	4834406	244416215	6	39000											
ESPN	83715	broad.mit.edu	37	chr1	6505714	6505714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatctggcccttccttctGcctccccagggctttccagc	7	18	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6505714	T	T	6505714	1	4	24	0	1	0	0	0	0	0	0	0	5296	1334	46	3		3	ESPN	1	6505714	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1671308	6505714	242744907	7	39001											
CLCN6	1185	broad.mit.edu	37	chr1	11889329	11889329	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatggtgttaggagaatgcCgacagatgtcctcttcgagt	13	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11889329	T	T	11889329	4	4	24	1	0	0	0	0	0	1	0	0	3498	653	23	4	1258	4	CLCN6	1	11889329	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5383615	11889329	237361292	8	39002											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12253928	12253928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaatgacccgaagcacCttgggtccctggcttgcctg	11	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12253928	A	A	12253928	1	1	24	0	1	0	0	0	0	0	0	0	16417	696	24	2		2	TNFRSF1B	1	12253928	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	364599	12253928	236996693	9	39003											
DHRS3	9249	broad.mit.edu	37	chr1	12677392	12677392	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggggcgaaactcccCgggccgagcaatacaggaat	16	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12677392	A	A	12677392	1	1	24	0	1	0	0	0	0	0	0	0	4531	667	23	1		1	DHRS3	1	12677392	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	423464	12677392	236573229	10	39004											
DDI2	84301	broad.mit.edu	37	chr1	15959945	15959945	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtagagaaattttctAgagtcctggtggagcagcag	12	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15959945	G	G	15959945	3	3	24	1	0	0	0	0	1	0	0	0	4362	412	15	5	531	5	DDI2	1	15959945	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	3282553	15959945	233290676	11	39005											
PLEKHM2	23207	broad.mit.edu	37	chr1	16060342	16060342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctccaacaagaagaaattCgaggatgccttgagcctcat	9	11	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16060342	A	A	16060342	3	1	24	1	0	0	0	0	1	0	0	0	12176	883	31	3	3051	3	PLEKHM2	1	16060342	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	100397	16060342	233190279	12	39006											
CLCNKA	1187	broad.mit.edu	37	chr1	16356507	16356507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcttgccgtcgccttcCctgagggcattgtgactgga	13	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16356507	A	A	16356507	3	1	24	1	0	0	0	0	1	0	0	0	3500	623	22	2	1395	2	CLCNKA	1	16356507	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	296165	16356507	232894114	13	39007											
FBXO42	54455	broad.mit.edu	37	chr1	16577152	16577152	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccacagaaaaggaaaggGgtttagaacacattatctct	9	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16577152	A	A	16577152	1	1	24	0	1	0	0	0	0	0	0	0	5808	1247	43	4		4	FBXO42	1	16577152	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	220645	16577152	232673469	14	39008											
SDHB	6390	broad.mit.edu	37	chr1	17371269	17371269	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcacttattaaggtcaaCttcataagtctgcatatgag	6	8	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17371269	T	T	17371269	3	4	24	1	0	0	0	0	1	0	0	0	14078	565	20	4	683	4	SDHB	1	17371269	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	794117	17371269	231879352	15	39009											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17954076	17954076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgtgcccctgccccacgcCacccacactaggtggcagtg	10	20	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17954076	T	T	17954076	1	4	24	0	1	0	0	0	0	0	0	0	897	609	21	4		4	ARHGEF10L	1	17954076	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	582807	17954076	231296545	16	39010											
UBR4	23352	broad.mit.edu	37	chr1	19518771	19518771	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggcagccagtgggtccttCtctttccccttatcagccaa	9	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19518771	G	G	19518771	3	3	24	1	0	0	0	0	1	0	0	0	17030	912	32	4	14630	4	UBR4	1	19518771	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1564695	19518771	229731850	17	39011											
TMCO4	255104	broad.mit.edu	37	chr1	20027137	20027137	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacagggccggtgcccggcCggttcctgggatcttccagg	15	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20027137	T	T	20027137	1	4	24	0	1	0	0	0	0	0	0	0	16121	667	23	4		4	TMCO4	1	20027137	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	508366	20027137	229223484	18	39012											
C1QC	714	broad.mit.edu	37	chr1	22970730	22970730	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctggtttgggggtttgggTctggggcagggatcagagtg	21	5	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22970730	A	A	22970730	1	1	24	0	1	0	0	0	0	0	0	0	1977	1682	58	5		5	C1QC	1	22970730	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2943593	22970730	226279891	19	39013											
HTR1D	3352	broad.mit.edu	37	chr1	23520676	23520676	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatctgttggaggcctcctGgggaaggccttctgctgact	15	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23520676	A	A	23520676	4	1	24	1	0	0	0	0	0	1	0	0	7508	1357	47	4	1100	4	HTR1D	1	23520676	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	549946	23520676	225729945	20	39014											
GRHL3	57822	broad.mit.edu	37	chr1	24664340	24664340	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagatatacctcctccttGggctagccacggaccctggg	11	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24664340	T	T	24664340	1	4	24	0	1	0	0	0	0	0	0	0	6831	1363	47	2		2	GRHL3	1	24664340	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1143664	24664340	224586281	21	39015											
RUNX3	864	broad.mit.edu	37	chr1	25256084	25256084	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccgcactcaccttgaaGgcgacgggcagcgtcttgtt	13	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25256084	T	T	25256084	2	4	24	1	0	0	0	0	0	0	0	1	13860	987	35	2		2	RUNX3	1	25256084	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	591744	25256084	223994537	22	39016											
RHCE	6006	broad.mit.edu	37	chr1	25697057	25697057	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatgcataatttaatgttAaaagatttggagcacaggat	8	3	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25697057	G	G	25697057	1	3	24	0	1	0	0	0	0	0	0	0	13434	377	13	5		5	RHCE	1	25697057	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	440973	25697057	223553564	23	39017											
SEPN1	57190	broad.mit.edu	37	chr1	26131589	26131589	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgagggagaggtgagccCtgtagcataagggcagtgcc	17	7	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26131589	T	T	26131589	1	4	24	0	1	0	0	0	0	0	0	0	14169	696	24	4		4	SEPN1	1	26131589	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	434532	26131589	223119032	24	39018											
CNKSR1	10256	broad.mit.edu	37	chr1	26516098	26516122	+	3'UTR	DEL	CTGACGTGTCCAGGACAGAGCATCC	-	-													ggccacctcaaccccagcttCtgacgtgtccaggacagagc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26516122	-	-	26516098	6	5	24	0	1	1	0	1	0	0	0	0	3638	928	32	0		0	CNKSR1	1	26516098	3'UTR	DEL	CTGACGTGTCCAGGACAGAGCATCC	TCGA-05-4427-01A-21D-1855-08	384509	26516098	222734523	25	39019											
ARID1A	8289	broad.mit.edu	37	chr1	27056169	27056169	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccaatggatcagatgggcAagatgagacctcagccatat	11	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27056169	C	C	27056169	3	2	24	1	0	0	0	0	1	0	0	0	915	131	5	5	1171	5	ARID1A	1	27056169	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	540071	27056169	222194452	26	39020											
AHDC1	27245	broad.mit.edu	37	chr1	27877829	27877829	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctccggctcgggcgatggTggctcgagggcctgggcctc	19	13	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27877829	C	C	27877829	2	2	24	1	0	0	0	0	0	0	0	1	412	1683	59	5		5	AHDC1	1	27877829	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	821660	27877829	221372792	27	39021											
SESN2	83667	broad.mit.edu	37	chr1	28595551	28595551	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacatgtgtatatctcccatCtggctccaccatccaaagta	5	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28595551	G	G	28595551	1	3	24	0	1	0	0	0	0	0	0	0	14238	928	32	4		4	SESN2	1	28595551	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	717722	28595551	220655070	28	39022											
KPNA6	23633	broad.mit.edu	37	chr1	32635433	32635433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagagcacctgcccagcaCttcatgtgtcctgtactagt	8	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32635433	A	A	32635433	1	1	24	0	1	0	0	0	0	0	0	0	8505	580	20	3		3	KPNA6	1	32635433	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4039882	32635433	216615188	29	39023											
CSMD2	114784	broad.mit.edu	37	chr1	34118079	34118079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgaggagagaagaagaCgagggtgaggctgcctcttc	17	7	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34118079	A	A	34118079	1	1	24	0	1	0	0	0	0	0	0	0	3979	551	19	3		3	CSMD2	1	34118079	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1482646	34118079	215132542	30	39024											
CSMD2	114784	broad.mit.edu	37	chr1	34164250	34164250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcagtccaagttgatggCccccaggccctggagcatgg	13	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34164250	A	A	34164250	1	1	24	0	1	0	0	0	0	0	0	0	3979	754	26	3		3	CSMD2	1	34164250	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	46171	34164250	215086371	31	39025											
CSMD2	114784	broad.mit.edu	37	chr1	34285977	34285977	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatatccatgccatcctctcCatttccacctgcaggaaggc	6	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34285977	T	T	34285977	1	4	24	0	1	0	0	0	0	0	0	0	3979	609	21	4		4	CSMD2	1	34285977	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	121727	34285977	214964644	32	39026											
CLSPN	63967	broad.mit.edu	37	chr1	36203045	36203045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagaaaagacagagaggCctattctgggaaaagctgat	13	5	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36203045	T	T	36203045	1	4	24	0	1	0	0	0	0	0	0	0	3592	754	26	4		4	CLSPN	1	36203045	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1917068	36203045	213047576	33	39027											
GRIK3	2899	broad.mit.edu	37	chr1	37319186	37319186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaagcccctgctcctccGcctgccctccctctcctgag	7	20	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37319186	T	T	37319186	1	4	24	0	1	0	0	0	0	0	0	0	6841	1102	38	3		3	GRIK3	1	37319186	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1116141	37319186	211931435	34	39028											
RSPO1	284654	broad.mit.edu	37	chr1	38079564	38079564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgctcatttcacattgcGctggcaggaagagaagggaa	12	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38079564	T	T	38079564	3	4	24	1	0	0	0	0	1	0	0	0	13820	1101	38	3	362	3	RSPO1	1	38079564	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	760378	38079564	211171057	35	39029											
HPCAL4	51440	broad.mit.edu	37	chr1	40149794	40149794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcggaaagcgtgctgcgCgaacttggaggcgtcgccgt	18	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40149794	A	A	40149794	3	1	24	1	0	0	0	0	1	0	0	0	7398	768	27	3	390	3	HPCAL4	1	40149794	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2070230	40149794	209100827	36	39030											
KCNQ4	9132	broad.mit.edu	37	chr1	41249968	41249968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctccggctcgggctccgCctgcggccagcgctcctcgg	16	18	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41249968	A	A	41249968	3	1	24	1	0	0	0	0	1	0	0	0	8155	739	26	3	205	3	KCNQ4	1	41249968	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1100174	41249968	208000653	37	39031											
PPCS	79717	broad.mit.edu	37	chr1	42923009	42923009	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaagatccagtcatctggGggcccactgcaggtgatggg	14	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42923009	A	A	42923009	2	1	24	1	0	0	0	0	0	0	0	1	12401	1219	43	4		4	PPCS	1	42923009	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1673041	42923009	206327612	38	39032											
CCDC30	728621	broad.mit.edu	37	chr1	43021930	43021930	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggagggctcacaacagaatCgagatatgaaagatgaagaa	12	5	1	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43021930	T	T	43021930	4	4	24	1	0	0	0	0	0	1	0	0	2832	876	31	4	543	4	CCDC30	1	43021930	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	98921	43021930	206228691	39	39033											
SLC2A1	6513	broad.mit.edu	37	chr1	43395490	43395490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagggtggctcagagtGggaagaaggccagggctcag	20	6	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43395490	T	T	43395490	1	4	24	0	1	0	0	0	0	0	0	0	14652	1363	47	2		2	SLC2A1	1	43395490	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	373560	43395490	205855131	40	39034											
CDC20	991	broad.mit.edu	37	chr1	43828709	43828709	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgagaccctgaggctatGgcgctgttttgagttggacc	14	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43828709	A	A	43828709	4	1	24	1	0	0	0	0	0	1	0	0	3089	1357	47	4	1447	4	CDC20	1	43828709	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	433219	43828709	205421912	41	39035											
DPH2	1802	broad.mit.edu	37	chr1	44437304	44437304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcttggggtgggcaccaGgtcaacccttctcctcctgc	11	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44437304	T	T	44437304	3	4	24	1	0	0	0	0	1	0	0	0	4760	1000	35	2	744	2	DPH2	1	44437304	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	608595	44437304	204813317	42	39036											
PRDX1	5052	broad.mit.edu	37	chr1	45981335	45981335	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagatttaccatgctagaTgacagaagtgagaatccaca	9	7	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45981335	G	G	45981335	3	3	24	1	0	0	0	0	1	0	0	0	12570	1464	51	5	364	5	PRDX1	1	45981335	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1544031	45981335	203269286	43	39037											
MAST2	23139	broad.mit.edu	37	chr1	46497868	46497868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaccacacctgctcccCgttggccagccccatgtccc	7	20	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46497868	A	A	46497868	3	1	24	1	0	0	0	0	1	0	0	0	9417	652	23	1	3304	1	MAST2	1	46497868	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	516533	46497868	202752753	44	39038											
KIAA0494	9813	broad.mit.edu	37	chr1	47183528	47183528	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgtggccccttggtaGtgcaaggagatgccttcttc	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47183528	A	A	47183528	1	1	24	0	1	0	0	0	0	0	0	0	8249	1044	36	4		4	KIAA0494	1	47183528	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	685660	47183528	202067093	45	39039											
CYP4Z1	199974	broad.mit.edu	37	chr1	47533119	47533119	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacctgcattctccctggCtcagttctctcaggctctcc	8	16	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47533119	T	T	47533119	1	4	24	0	1	0	0	0	0	0	0	0	4227	812	28	4		4	CYP4Z1	1	47533119	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	349591	47533119	201717502	46	39040											
TAL1	6886	broad.mit.edu	37	chr1	47685464	47685464	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggccgtgtgtttgggcgcGggctcctccgtgtagctgtc	17	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47685464	T	T	47685464	2	4	24	1	0	0	0	0	0	0	0	1	15660	1103	39	1		1	TAL1	1	47685464	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	152345	47685464	201565157	47	39041											
ELAVL4	1996	broad.mit.edu	37	chr1	50610800	50610800	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagaatatgacccaagaaGaattcaggagtctcttcggg	10	10	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50610800	T	T	50610800	4	4	24	1	0	0	0	0	0	1	0	0	5094	943	33	3	286	3	ELAVL4	1	50610800	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2925336	50610800	198639821	48	39042											
TXNDC12	51060	broad.mit.edu	37	chr1	52492898	52492898	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcacgaatgatactaactTtaaaagtcttaaaatcatag	5	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52492898	A	A	52492898	1	1	24	0	1	0	0	0	0	0	0	0	16919	1856	64	5		5	TXNDC12	1	52492898	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1882098	52492898	196757723	49	39043											
C8A	731	broad.mit.edu	37	chr1	57349120	57349120	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgagaaatggctctatgtGcacaaagctaatatctatcc	7	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57349120	C	C	57349120	1	2	24	0	1	0	0	0	0	0	0	0	2441	1334	46	4		4	C8A	1	57349120	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4856222	57349120	191901501	50	39044											
DAB1	1600	broad.mit.edu	37	chr1	57481056	57481056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctgctgttggacgaggGgctgctgaccccagaaggac	14	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57481056	T	T	57481056	3	4	24	1	0	0	0	0	1	0	0	0	4250	1232	43	2	735	2	DAB1	1	57481056	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	131936	57481056	191769565	51	39045											
OMA1	115209	broad.mit.edu	37	chr1	58971854	58971854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatttgctgccaaaacaCtgaactggctcttatgtctg	7	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58971854	A	A	58971854	3	1	24	1	0	0	0	0	1	0	0	0	10958	565	20	3	339	3	OMA1	1	58971854	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1490798	58971854	190278767	52	39046											
C1orf87	127795	broad.mit.edu	37	chr1	60499070	60499070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagaatatggatcagccCtgtgccttattgctatagac	10	9	1	2	rs35194533		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60499070	A	A	60499070	1	1	24	0	1	0	0	0	0	0	0	0	2086	696	24	2		2	C1orf87	1	60499070	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1527216	60499070	188751551	53	39047											
KANK4	163782	broad.mit.edu	37	chr1	62704056	62704056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagctgtgcggccagcctAcaggagaaaaaggaaagaag	13	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62704056	G	G	62704056	1	3	24	0	1	0	0	0	0	0	0	0	8049	406	14	5		5	KANK4	1	62704056	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2204986	62704056	186546565	54	39048											
KANK4	163782	broad.mit.edu	37	chr1	62739519	62739519	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccctggtcaagagtccatgGacagggtcagtgttcaccat	11	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739519	T	T	62739519	2	4	24	1	0	0	0	0	0	0	0	1	8049	1161	41	3		3	KANK4	1	62739519	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	35463	62739519	186511102	55	39049											
UBE2U	148581	broad.mit.edu	37	chr1	64707453	64707453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgaatgtgtacattaaCttgaattgtctattattcca	6	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64707453	A	A	64707453	1	1	24	0	1	0	0	0	0	0	0	0	17000	580	20	3		3	UBE2U	1	64707453	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1967934	64707453	184543168	56	39050											
CACHD1	57685	broad.mit.edu	37	chr1	65120336	65120336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcttaattttatcttttGcctgaaatatttaattctgt	5	5	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65120336	T	T	65120336	1	4	24	0	1	0	0	0	0	0	0	0	2563	1334	46	3		3	CACHD1	1	65120336	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	412883	65120336	184130285	57	39051											
AK3L1	205	broad.mit.edu	37	chr1	65691779	65691779	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccaccaattttccggaacGgagacgaacaaaatctggcc	8	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65691779	C	C	65691779	2	2	24	1	0	0	0	0	0	0	0	1	442	1103	39	4		4	AK3L1	1	65691779	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	571443	65691779	183558842	58	39052											
DNAJC6	9829	broad.mit.edu	37	chr1	65831778	65831778	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acataggattcaggaatcagGttgatgacattcgaagcttt	10	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65831778	A	A	65831778	3	1	24	1	0	0	0	0	1	0	0	0	4693	1261	44	4	285	4	DNAJC6	1	65831778	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	139999	65831778	183418843	59	39053											
DNAJC6	9829	broad.mit.edu	37	chr1	65852408	65852408	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgaacagtcctctgggCcagagccatagagaactata	12	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65852408	G	G	65852408	1	3	24	0	1	0	0	0	0	0	0	0	4693	754	26	4		4	DNAJC6	1	65852408	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	20630	65852408	183398213	60	39054											
LEPROT	54741	broad.mit.edu	37	chr1	65897500	65897500	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagatcaaatggggagcCtgcggccttgtgttggcagg	15	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65897500	T	T	65897500	2	4	24	1	0	0	0	0	0	0	0	1	8804	668	24	4		4	LEPROT	1	65897500	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	45092	65897500	183353121	61	39055											
SGIP1	84251	broad.mit.edu	37	chr1	67091696	67091696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttttctcggatattgtgtActatttgctttcctcatttc	6	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67091696	G	G	67091696	1	3	24	0	1	0	0	0	0	0	0	0	14319	406	14	5		5	SGIP1	1	67091696	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1194196	67091696	182158925	62	39056											
SGIP1	84251	broad.mit.edu	37	chr1	67133274	67133274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtatagagaaaattgctGccaaggcaaggtggccaggt	13	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67133274	T	T	67133274	1	4	24	0	1	0	0	0	0	0	0	0	14319	1334	46	3		3	SGIP1	1	67133274	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	41578	67133274	182117347	63	39057											
LRRC7	57554	broad.mit.edu	37	chr1	70339276	70339276	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcatcaggagcatcagcacGaatagactttgtagaggtag	12	7	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70339276	T	T	70339276	1	4	24	0	1	0	0	0	0	0	0	0	9107	1073	37	3		3	LRRC7	1	70339276	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3206002	70339276	178911345	64	39058											
LRRC7	57554	broad.mit.edu	37	chr1	70460378	70460378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaactaaaggatatattgAgttttctaattcaaaacatt	5	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70460378	G	G	70460378	1	3	24	0	1	0	0	0	0	0	0	0	9107	319	11	5		5	LRRC7	1	70460378	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	121102	70460378	178790243	65	39059											
LRRC7	57554	broad.mit.edu	37	chr1	70493759	70493759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaacactcactgtattgCatttgattatactactgaat	5	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70493759	A	A	70493759	1	1	24	0	1	0	0	0	0	0	0	0	9107	725	25	3		3	LRRC7	1	70493759	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	33381	70493759	178756862	66	39060											
LRRC7	57554	broad.mit.edu	37	chr1	70503628	70503628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagttaaagcaggataaagGgatggatttttaaaatatga	10	1	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70503628	T	T	70503628	1	4	24	0	1	0	0	0	0	0	0	0	9107	1247	43	2		2	LRRC7	1	70503628	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	9869	70503628	178746993	67	39061											
LRRC7	57554	broad.mit.edu	37	chr1	70504590	70504590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgggaccagagcatgGtatgtccagtatgtctcgaa	13	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70504590	T	T	70504590	3	4	24	1	0	0	0	0	1	0	0	0	9107	1261	44	3	3043	3	LRRC7	1	70504590	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	962	70504590	178746031	68	39062											
NEGR1	257194	broad.mit.edu	37	chr1	72400927	72400927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccactgaccacttatcacCtcccgcaaaaataatacttg	3	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72400927	A	A	72400927	3	1	24	1	0	0	0	0	1	0	0	0	10412	681	24	2	844	2	NEGR1	1	72400927	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1896337	72400927	176849694	69	39063											
LRRIQ3	127255	broad.mit.edu	37	chr1	74492516	74492516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattttatcagtccattgGgaactttaaagtctaaattt	5	6	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74492516	T	T	74492516	3	4	24	1	0	0	0	0	1	0	0	0	9117	1232	43	2	22	2	LRRIQ3	1	74492516	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2091589	74492516	174758105	70	39064											
LRRIQ3	127255	broad.mit.edu	37	chr1	74575175	74575175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctttggttatgtaaatcCattttgcttcatatcctcta	4	10	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74575175	A	A	74575175	3	1	24	1	0	0	0	0	1	0	0	0	9117	595	21	2	1120	2	LRRIQ3	1	74575175	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	82659	74575175	174675446	71	39065											
TNNI3K	51086	broad.mit.edu	37	chr1	74669997	74669997	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgatttgtaacttatggGttataaaaccctggggtttt	9	4	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74669997	C	C	74669997	1	2	24	0	1	0	0	0	0	0	0	0	16452	1276	44	4		4	TNNI3K	1	74669997	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	94822	74669997	174580624	72	39066											
TNNI3K	51086	broad.mit.edu	37	chr1	74957781	74957781	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgcccctcctccactcagCtgatgtctcctgcatcaagt	6	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74957781	G	G	74957781	3	3	24	1	0	0	0	0	1	0	0	0	16452	811	28	4	2627	4	TNNI3K	1	74957781	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	287784	74957781	174292840	73	39067											
C1orf173	127254	broad.mit.edu	37	chr1	75037552	75037552	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccctgaacttttctgccAttatgggatcttcctcagca	6	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75037552	G	G	75037552	3	3	24	1	0	0	0	0	1	0	0	0	2034	217	8	5	754	5	C1orf173	1	75037552	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	79771	75037552	174213069	74	39068											
C1orf173	127254	broad.mit.edu	37	chr1	75038096	75038096	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttccccttcttccgCtttaagtttttgctcttctt	4	13	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75038096	T	T	75038096	3	4	24	1	0	0	0	0	1	0	0	0	2034	797	28	4	1298	4	C1orf173	1	75038096	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	544	75038096	174212525	75	39069											
C1orf173	127254	broad.mit.edu	37	chr1	75038387	75038387	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaaacctgcatccggcttgCctctgcctctcctgtgaagg	10	15	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75038387	T	T	75038387	3	4	24	1	0	0	0	0	1	0	0	0	2034	739	26	4	1589	4	C1orf173	1	75038387	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	291	75038387	174212234	76	39070											
LHX8	431707	broad.mit.edu	37	chr1	75596247	75596247	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagtgggtcccagacggaGgccctcgcccgcttttggcg	14	15	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75596247	T	T	75596247	1	4	24	1	0	0	0	0	0	0	0	0	8848	1015	35	2		2	LHX8	1	75596247	Translation_Start_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	557860	75596247	173654374	77	39071											
SLC44A5	204962	broad.mit.edu	37	chr1	75685475	75685475	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtttaaagaggccaattacCaaaggatacactgctgtcac	9	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75685475	G	G	75685475	1	3	24	0	1	0	0	0	0	0	0	0	14753	609	21	4		4	SLC44A5	1	75685475	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	89228	75685475	173565146	78	39072											
SLC44A5	204962	broad.mit.edu	37	chr1	75707766	75707766	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actaaaatagaaggaagaacGttaacatttcaaaggccatg	8	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75707766	C	C	75707766	1	2	24	0	1	0	0	0	0	0	0	0	14753	1160	40	4		4	SLC44A5	1	75707766	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	22291	75707766	173542855	79	39073											
ASB17	127247	broad.mit.edu	37	chr1	76398059	76398059	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatattttgacaatgtggcAggctttactccacaaacaga	7	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76398059	T	T	76398059	1	4	24	0	1	0	0	0	0	0	0	0	1025	203	7	5		5	ASB17	1	76398059	5'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	690293	76398059	172852562	80	39074											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77510143	77510143	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtgttcatcttctggggCcccagcagctacatgcggcg	12	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77510143	A	A	77510143	2	1	24	1	0	0	0	0	0	0	0	1	15345	726	26	3		3	ST6GALNAC5	1	77510143	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1112084	77510143	171740478	81	39075											
IFI44L	10964	broad.mit.edu	37	chr1	79107285	79107285	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttagaagatttgcctcttGaggaaactggtaatctggcc	10	7	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79107285	C	C	79107285	3	2	24	1	0	0	0	0	1	0	0	0	7588	1291	45	4	1341	4	IFI44L	1	79107285	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1597142	79107285	170143336	82	39076											
ELTD1	64123	broad.mit.edu	37	chr1	79403913	79403913	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgaaagatctgtcacagAatttctatagacttcttgta	8	6	4	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79403913	T	T	79403913	3	4	24	1	0	0	0	0	1	0	0	0	5126	246	9	5	1668	5	ELTD1	1	79403913	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	296628	79403913	169846708	83	39077											
LPHN2	23266	broad.mit.edu	37	chr1	81969166	81969166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctctgatgggcaggaccCagctttccacttgccactct	8	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81969166	A	A	81969166	1	1	24	0	1	0	0	0	0	0	0	0	9003	609	21	2		2	LPHN2	1	81969166	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2565253	81969166	167281455	84	39078											
LPHN2	23266	broad.mit.edu	37	chr1	82447620	82447620	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tatatttaatgctttccaggGagtgttcattttcatctttc	6	7	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82447620	C	C	82447620	3	2	24	1	0	0	0	0	1	0	0	0	9003	1174	41	4	3253	4	LPHN2	1	82447620	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	478454	82447620	166803001	85	39079											
TTLL7	79739	broad.mit.edu	37	chr1	84399389	84399389	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaggttgaccaggtctacAcattcgataggcatgcagga	13	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84399389	G	G	84399389	3	3	24	1	0	0	0	0	1	0	0	0	16858	159	6	5	1766	5	TTLL7	1	84399389	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1951769	84399389	164851232	86	39080											
MCOLN2	255231	broad.mit.edu	37	chr1	85412637	85412637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattatcatgcaaacaaacCatttaaataccccaagccac	2	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85412637	A	A	85412637	1	1	24	0	1	0	0	0	0	0	0	0	9489	609	21	2		2	MCOLN2	1	85412637	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1013248	85412637	163837984	87	39081											
COL24A1	255631	broad.mit.edu	37	chr1	86250028	86250028	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttaccttgaattccaggttGaccaggtagcccttgttcac	8	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86250028	A	A	86250028	4	1	24	1	0	0	0	0	0	1	0	0	3715	1299	45	4	1111	4	COL24A1	1	86250028	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	837391	86250028	163000593	88	39082											
GBP1	2633	broad.mit.edu	37	chr1	89523879	89523879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaatttccggatacagaGtctgggcaggttaaaagttt	12	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89523879	T	T	89523879	3	4	24	1	0	0	0	0	1	0	0	0	6335	1029	36	3	1132	3	GBP1	1	89523879	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3273851	89523879	159726742	89	39083											
RPAP2	79871	broad.mit.edu	37	chr1	92765689	92765689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttatgagaccgctgtctGtatgctgtccgtcgtttacg	10	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92765689	T	T	92765689	1	4	24	0	1	0	0	0	0	0	0	0	13653	1392	48	3		3	RPAP2	1	92765689	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3241810	92765689	156484932	90	39084											
CCDC18	343099	broad.mit.edu	37	chr1	93672778	93672778	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagtattttgaagctagaGagtgagttagagaacaaaga	11	3	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93672778	A	A	93672778	2	1	24	1	0	0	0	0	0	0	0	1	2821	933	33	4		4	CCDC18	1	93672778	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	907089	93672778	155577843	91	39085											
ALG14	199857	broad.mit.edu	37	chr1	95448590	95448590	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccaatttgagtacatacTactgttaactgcaaaattct	4	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95448590	C	C	95448590	1	2	24	0	1	0	0	0	0	0	0	0	516	1537	53	5		5	ALG14	1	95448590	3'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	1775812	95448590	153802031	92	39086											
LPPR5	163404	broad.mit.edu	37	chr1	99380540	99380540	+	Intron	DEL	G	-	-													actgtgactttcagccttttGaggagcttaataaagctaag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99380540	-	-	99380540	6	5	24	0	1	1	0	1	0	0	0	0	9015	1305	45	0		0	LPPR5	1	99380540	Intron	DEL	G	TCGA-05-4427-01A-21D-1855-08	3931950	99380540	149870081	93	39087											
LPPR4	9890	broad.mit.edu	37	chr1	99753462	99753462	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagagaaagccacttgttttCtatgtatgccctgtatatca	8	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99753462	G	G	99753462	1	3	24	0	1	0	0	0	0	0	0	0	9014	928	32	4		4	LPPR4	1	99753462	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	372922	99753462	149497159	94	39088											
FRRS1	391059	broad.mit.edu	37	chr1	100174799	100174799	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggatctgaattctgtcAtcatccaatatttcaactgt	6	8	5	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100174799	T	T	100174799	3	4	24	1	0	0	0	0	1	0	0	0	6120	217	8	5	275	5	FRRS1	1	100174799	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	421337	100174799	149075822	95	39089											
CDC14A	8556	broad.mit.edu	37	chr1	100858668	100858668	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatttcattttctagttgaAaaatagtccgttcagtctca	6	7	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100858668	C	C	100858668	1	2	24	0	1	0	0	0	0	0	0	0	3086	29	1	5		5	CDC14A	1	100858668	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	683869	100858668	148391953	96	39090											
OLFM3	118427	broad.mit.edu	37	chr1	102270165	102270165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgcatacacagcccacaGcccgatttcatcagccatta	6	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102270165	T	T	102270165	3	4	24	1	0	0	0	0	1	0	0	0	10949	962	34	3	374	3	OLFM3	1	102270165	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1411497	102270165	146980456	97	39091											
OLFM3	118427	broad.mit.edu	37	chr1	102270432	102270432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaattgatttgtattcacGaacaattttattgttagtat	6	4	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102270432	T	T	102270432	3	4	24	1	0	0	0	0	1	0	0	0	10949	1058	37	3	641	3	OLFM3	1	102270432	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	267	102270432	146980189	98	39092											
COL11A1	1301	broad.mit.edu	37	chr1	103354296	103354296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagtagagcctttgttacCctttgggccttgaggaccct	10	11	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103354296	A	A	103354296	3	1	24	1	0	0	0	0	1	0	0	0	3699	623	22	2	911	2	COL11A1	1	103354296	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1083864	103354296	145896325	99	39093											
COL11A1	1301	broad.mit.edu	37	chr1	103379962	103379962	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaaaaccaacaggaccCtagaatgacgttttgaaaga	9	9	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103379962	T	T	103379962	5	4	24	1	0	0	0	0	0	0	1	0	3699	695	24	4	1560	4	COL11A1	1	103379962	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	25666	103379962	145870659	100	39094											
COL11A1	1301	broad.mit.edu	37	chr1	103412446	103412446	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaccaggaggaccctgagGtcccgggcgccctggtaaac	15	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103412446	C	C	103412446	3	2	24	1	0	0	0	0	1	0	0	0	3699	1261	44	4	2289	4	COL11A1	1	103412446	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	32484	103412446	145838175	101	39095											
NTNG1	22854	broad.mit.edu	37	chr1	107867585	107867585	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcaatgggaacgggtgtgTccaaagaaaatgccagagtg	13	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107867585	A	A	107867585	1	1	24	0	1	0	0	0	0	0	0	0	10799	1682	58	5		5	NTNG1	1	107867585	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	4455139	107867585	141383036	102	39096											
NTNG1	22854	broad.mit.edu	37	chr1	107937777	107937777	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctctcctctgcccaggTgcaagtgtaatctccatgcc	8	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107937777	A	A	107937777	3	1	24	1	0	0	0	0	1	0	0	0	10799	1710	59	5	899	5	NTNG1	1	107937777	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	70192	107937777	141312844	103	39097											
VAV3	10451	broad.mit.edu	37	chr1	108116591	108116591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagtatagaggcttctccCtggtgccacaatgggtgcaa	11	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108116591	A	A	108116591	1	1	24	0	1	0	0	0	0	0	0	0	17260	696	24	2		2	VAV3	1	108116591	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	178814	108116591	141134030	104	39098											
VAV3	10451	broad.mit.edu	37	chr1	108138975	108138975	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaagttcctttggaaaaaAgaatccaacatatttttgat	5	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108138975	C	C	108138975	1	2	24	0	1	0	0	0	0	0	0	0	17260	87	3	5		5	VAV3	1	108138975	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	22384	108138975	141111646	105	39099											
FAM102B	284611	broad.mit.edu	37	chr1	109103201	109103201	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccaggtaactcgcctccCgcgccgcctcgcccctttct	7	22	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109103201	T	T	109103201	1	4	24	0	1	0	0	0	0	0	0	0	5429	667	23	4		4	FAM102B	1	109103201	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	964226	109103201	140147420	106	39100											
AKNAD1	254268	broad.mit.edu	37	chr1	109385919	109385919	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtcactggaatcattcAcatgcaagcctgtgtgtgta	10	8	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109385919	G	G	109385919	1	3	24	0	1	0	0	0	0	0	0	0	464	174	6	5		5	AKNAD1	1	109385919	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	282718	109385919	139864702	107	39101											
CELSR2	1952	broad.mit.edu	37	chr1	109801502	109801502	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcttcgactcctccgcGcccttcatcgcctcctcctc	6	22	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109801502	T	T	109801502	2	4	24	1	0	0	0	0	0	0	0	1	3252	1074	38	3		3	CELSR2	1	109801502	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	415583	109801502	139449119	108	39102											
CELSR2	1952	broad.mit.edu	37	chr1	109807747	109807747	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcagaagggccacatAgggctcacctaggttaggtg	15	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109807747	T	T	109807747	1	4	24	0	1	0	0	0	0	0	0	0	3252	435	15	5		5	CELSR2	1	109807747	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	6245	109807747	139442874	109	39103											
CELSR2	1952	broad.mit.edu	37	chr1	109810087	109810087	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggcccatgaggtgctgGcctccagcagaacctctcag	11	17	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109810087	A	A	109810087	1	1	24	0	1	0	0	0	0	0	0	0	3252	1218	42	4		4	CELSR2	1	109810087	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2340	109810087	139440534	110	39104											
EPS8L3	79574	broad.mit.edu	37	chr1	110294767	110294767	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagggtcatggttgtgtgtCttctcctgaggaaagtgtga	15	5	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110294767	T	T	110294767	2	4	24	1	0	0	0	0	0	0	0	1	5239	912	32	4		4	EPS8L3	1	110294767	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	484680	110294767	138955854	111	39105											
EPS8L3	79574	broad.mit.edu	37	chr1	110300460	110300460	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgatcttctggaagcaGtcaatgtactgtgcctgggt	12	8	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110300460	A	A	110300460	2	1	24	1	0	0	0	0	0	0	0	1	5239	1020	36	4		4	EPS8L3	1	110300460	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	5693	110300460	138950161	112	39106											
CHI3L2	1117	broad.mit.edu	37	chr1	111778703	111778703	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggtcttgggaaaagccCcttatcactggccacaacag	10	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111778703	A	A	111778703	2	1	24	1	0	0	0	0	0	0	0	1	3372	610	22	2		2	CHI3L2	1	111778703	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1478243	111778703	137471918	113	39107											
MAGI3	260425	broad.mit.edu	37	chr1	114092319	114092319	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaactaattaaacatctaCagatagtttgatggagtatt	6	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114092319	T	T	114092319	1	4	24	0	1	0	0	0	0	0	0	0	9284	493	17	4		4	MAGI3	1	114092319	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2313616	114092319	135158302	114	39108											
SYCP1	6847	broad.mit.edu	37	chr1	115487077	115487077	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaatcttttggaagagGtgggaaaaacttaatgtatt	10	2	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115487077	A	A	115487077	5	1	24	1	0	0	0	0	0	0	1	0	15550	1275	44	4	2134	4	SYCP1	1	115487077	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	1394758	115487077	133763544	115	39109											
MAN1A2	10905	broad.mit.edu	37	chr1	117948254	117948254	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcaaggaaaggacactcCcctaacatatttggtaagtt	8	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117948254	T	T	117948254	2	4	24	1	0	0	0	0	0	0	0	1	9303	610	22	4		4	MAN1A2	1	117948254	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2461177	117948254	131302367	116	39110											
WDR3	10885	broad.mit.edu	37	chr1	118482105	118482105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatattctataggtatgGgggttggttctgttgtcaga	12	3	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118482105	T	T	118482105	3	4	24	1	0	0	0	0	1	0	0	0	17412	1241	43	2	603	2	WDR3	1	118482105	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	533851	118482105	130768516	117	39111											
SPAG17	200162	broad.mit.edu	37	chr1	118617343	118617343	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgaaaaggcaatgccTgaaaggcatgttttgtgcct	12	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118617343	A	A	118617343	1	1	24	0	1	0	0	0	0	0	0	0	15095	1595	55	5		5	SPAG17	1	118617343	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	135238	118617343	130633278	118	39112											
TBX15	6913	broad.mit.edu	37	chr1	119441696	119441696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcgaaggtgagtgtgcGcacaggaggtctccagaatg	15	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119441696	T	T	119441696	3	4	24	1	0	0	0	0	1	0	0	0	15774	1087	38	3	837	3	TBX15	1	119441696	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	824353	119441696	129808925	119	39113											
HSD3B2	3284	broad.mit.edu	37	chr1	119981573	119981573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctagaataagatcttctcCccagcatcttctgtttcctg	5	14	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119981573	A	A	119981573	1	1	24	0	1	0	0	0	0	0	0	0	7458	638	22	2		2	HSD3B2	1	119981573	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	539877	119981573	129269048	120	39114											
HSD3B2	3284	broad.mit.edu	37	chr1	119987964	119987964	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttcatctacaccagtaCcctccagttagccgggccca	7	16	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119987964	A	A	119987964	1	1	24	0	1	0	0	0	0	0	0	0	7458	522	18	3		3	HSD3B2	1	119987964	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	6391	119987964	129262657	121	39115											
NBPF7	343505	broad.mit.edu	37	chr1	120381963	120381963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctatttgaataagtgatggCacattcctccagtgagtcct	9	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120381963	A	A	120381963	3	1	24	1	0	0	0	0	1	0	0	0	10293	710	25	3	598	3	NBPF7	1	120381963	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	393999	120381963	128868658	122	39116											
PDE4DIP	9659	broad.mit.edu	37	chr1	144868162	144868162	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtggaagcaggaggaacAgtgctggcacctgggcagaa	17	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144868162	T	T	144868162	2	4	24	1	0	0	0	0	0	0	0	1	11737	175	7	5		5	PDE4DIP	1	144868162	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	24486199	144868162	104382459	123	39117											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879316	144879316	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaactgagagggaccggacCcggctcttgaggttttgaat	14	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144879316	A	A	144879316	2	1	24	1	0	0	0	0	0	0	0	1	11737	610	22	2		2	PDE4DIP	1	144879316	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	11154	144879316	104371305	124	39118											
NBPF10	100132406	broad.mit.edu	37	chr1	145281864	145281864	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagttttatgggcccaCtgtggtccataaactgagca	13	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145281864	T	T	145281864	1	4	24	0	1	0	0	0	0	0	0	0	10287	580	20	4		4	NBPF10	1	145281864	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	402548	145281864	103968757	125	39119											
NBPF10	100132406	broad.mit.edu	37	chr1	145296388	145296388	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctagttcactctcaggaaCgagagctgacccagctaagg	10	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145296388	T	T	145296388	4	4	24	1	0	0	0	0	0	1	0	0	10287	528	19	4	320	4	NBPF10	1	145296388	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	14524	145296388	103954233	126	39120											
NBPF10	100132406	broad.mit.edu	37	chr1	145323815	145323815	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatcttttcaaccaagcctGaattattcctactaacattg	3	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145323815	A	A	145323815	1	1	24	0	1	0	0	0	0	0	0	0	10287	1305	45	4		4	NBPF10	1	145323815	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	27427	145323815	103926806	127	39121											
CHD1L	9557	broad.mit.edu	37	chr1	146727415	146727415	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattttccagatatgcacatCctgtcacatggatctagtat	6	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146727415	A	A	146727415	1	1	24	0	1	0	0	0	0	0	0	0	3355	870	30	3		3	CHD1L	1	146727415	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1403600	146727415	102523206	128	39122											
RFX5	5993	broad.mit.edu	37	chr1	151315112	151315112	+	Frame_Shift_Del	DEL	C	-	-													cctgacttttttcgagggcgCccccgtttccttttggcatc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151315112	-	-	151315112	7	5	24	1	0	1	0	1	0	0	0	0	13374	726	26	0	453	0	RFX5	1	151315112	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	4587697	151315112	97935509	129	39123											
SELENBP1	8991	broad.mit.edu	37	chr1	151340867	151340867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttaacctccatacttccCctacttctatctgctgactc	2	17	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151340867	A	A	151340867	1	1	24	0	1	0	0	0	0	0	0	0	14127	638	22	2		2	SELENBP1	1	151340867	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	25755	151340867	97909754	130	39124											
TDRKH	11022	broad.mit.edu	37	chr1	151754015	151754015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagcctcctggggaaccCgcatctctatctcaatgtca	7	15	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151754015	A	A	151754015	3	1	24	1	0	0	0	0	1	0	0	0	15859	652	23	1	1556	1	TDRKH	1	151754015	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	413148	151754015	97496606	131	39125											
TCHHL1	126637	broad.mit.edu	37	chr1	152059644	152059644	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatcattgtgttcagatgCttctcctggaaagttgtgag	12	6	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152059644	T	T	152059644	3	4	24	1	0	0	0	0	1	0	0	0	15823	797	28	4	2204	4	TCHHL1	1	152059644	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	305629	152059644	97190977	132	39126											
HRNR	388697	broad.mit.edu	37	chr1	152192040	152192040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacagacccatgtgggcCattgcttgaagaccaaccgg	12	11	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152192040	A	A	152192040	3	1	24	1	0	0	0	0	1	0	0	0	7426	594	21	2	6491	2	HRNR	1	152192040	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	132396	152192040	97058581	133	39127											
LCE2B	26239	broad.mit.edu	37	chr1	152659670	152659670	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgggctaagaagaacTctttggacagaatgtttaag	11	6	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152659670	C	C	152659670	1	2	24	0	1	0	0	0	0	0	0	0	8738	1566	54	5		5	LCE2B	1	152659670	3'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	467630	152659670	96590951	134	39128											
SMCP	4184	broad.mit.edu	37	chr1	152857053	152857053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggcagtcaatgctgccCaccaaaacacaatcactgct	6	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152857053	A	A	152857053	3	1	24	1	0	0	0	0	1	0	0	0	14903	594	21	2	157	2	SMCP	1	152857053	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	197383	152857053	96393568	135	39129											
SPRR2E	6704	broad.mit.edu	37	chr1	153066193	153066193	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcacacaggaggtggctggCagggctgcttgcactgctgc	17	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153066193	G	G	153066193	3	3	24	1	0	0	0	0	1	0	0	0	15218	710	25	4	187	4	SPRR2E	1	153066193	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	209140	153066193	96184428	136	39130											
PGLYRP4	57115	broad.mit.edu	37	chr1	153315534	153315535	+	Intron	INS	-	T	T													gacaaaggattagagaactcINStttggagaaggtcagctgtg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153315535	T	T	153315534	6	5	24	0	1	1	1	0	0	0	0	0	11891	928	32	0		0	PGLYRP4	1	153315534	Intron	INS	-	TCGA-05-4427-01A-21D-1855-08	249341	153315534	95935087	137	39131											
JTB	10899	broad.mit.edu	37	chr1	153949634	153949634	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccttttccctccccttaCctcctccttaccagagcttt	2	20	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153949634	T	T	153949634	1	4	24	0	1	0	0	0	0	0	0	0	8037	522	18	4		4	JTB	1	153949634	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	634100	153949634	95300987	138	39132											
UBAP2L	9898	broad.mit.edu	37	chr1	154238972	154238972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtctgtttcctcctccCccaggtgtttcagtcacctc	6	17	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154238972	A	A	154238972	1	1	24	0	1	0	0	0	0	0	0	0	16964	638	22	2		2	UBAP2L	1	154238972	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	289338	154238972	95011649	139	39133											
IL6R	3570	broad.mit.edu	37	chr1	154401785	154401785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgctcaggaagccggctGcaggctcccaccccagcaga	14	15	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154401785	T	T	154401785	3	4	24	1	0	0	0	0	1	0	0	0	7772	1319	46	3	205	3	IL6R	1	154401785	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	162813	154401785	94848836	140	39134											
ADAR	103	broad.mit.edu	37	chr1	154570433	154570433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgtggctgaaggggtgGgggtctgggactctgcagtc	20	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154570433	T	T	154570433	3	4	24	1	0	0	0	0	1	0	0	0	281	1232	43	2	1923	2	ADAR	1	154570433	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	168648	154570433	94680188	141	39135											
PMVK	10654	broad.mit.edu	37	chr1	154901641	154901641	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccaggagtctctggaagttCaagccatgctcctgcccaaa	9	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154901641	A	A	154901641	3	1	24	1	0	0	0	0	1	0	0	0	12239	825	29	3	419	3	PMVK	1	154901641	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	331208	154901641	94348980	142	39136											
PBXIP1	57326	broad.mit.edu	37	chr1	154919131	154919131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacagtcggcctccagcCcctggagccgggcccgcagc	14	18	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154919131	A	A	154919131	3	1	24	1	0	0	0	0	1	0	0	0	11590	623	22	2	1184	2	PBXIP1	1	154919131	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	17490	154919131	94331490	143	39137											
SHC1	6464	broad.mit.edu	37	chr1	154942391	154942391	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaaaggtttaggaaatagGacactgaaacggggttgttg	15	3	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154942391	C	C	154942391	1	2	24	0	1	0	0	0	0	0	0	0	14383	1189	41	4		4	SHC1	1	154942391	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	23260	154942391	94308230	144	39138											
ZBTB7B	51043	broad.mit.edu	37	chr1	154987854	154987854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggaggaggaggtggcgGgcagagtgggcagcagtggg	24	4	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154987854	T	T	154987854	3	4	24	1	0	0	0	0	1	0	0	0	17680	1232	43	2	720	2	ZBTB7B	1	154987854	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	45463	154987854	94262767	145	39139											
PKLR	5313	broad.mit.edu	37	chr1	155269918	155269918	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgatgctggtactgcgaGcagccacgggctcggagtca	14	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155269918	A	A	155269918	3	1	24	1	0	0	0	0	1	0	0	0	12071	971	34	4	1510	4	PKLR	1	155269918	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	282064	155269918	93980703	146	39140											
RUSC1	23623	broad.mit.edu	37	chr1	155294588	155294588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggagcccggagtcctcGgaataacacttggtaagtgt	14	9	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155294588	T	T	155294588	1	4	24	0	1	0	0	0	0	0	0	0	13861	1131	39	1		1	RUSC1	1	155294588	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	24670	155294588	93956033	147	39141											
INSRR	3645	broad.mit.edu	37	chr1	156814347	156814347	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagtagtttccaggggGcagcagggccaggtggactc	18	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156814347	A	A	156814347	3	1	24	1	0	0	0	0	1	0	0	0	7844	1203	42	4	1284	4	INSRR	1	156814347	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1519759	156814347	92436274	148	39142											
ARHGEF11	9826	broad.mit.edu	37	chr1	157014186	157014186	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcttgatcaggattgaatCgcttgcaatttttgagcaag	10	6	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157014186	A	A	157014186	1	1	24	0	1	0	0	0	0	0	0	0	898	899	31	3		3	ARHGEF11	1	157014186	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	199839	157014186	92236435	149	39143											
ETV3L	440695	broad.mit.edu	37	chr1	157068577	157068577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtggggggatggcggcGcccgcacttcccacaaagga	16	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157068577	T	T	157068577	3	4	24	1	0	0	0	0	1	0	0	0	5322	1087	38	3	690	3	ETV3L	1	157068577	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	54391	157068577	92182044	150	39144											
FCRL5	83416	broad.mit.edu	37	chr1	157497606	157497606	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagagcctctcggggcctcAcagtgaagctccagcaggtc	14	13	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157497606	G	G	157497606	2	3	24	1	0	0	0	0	0	0	0	1	5855	157	6	5		5	FCRL5	1	157497606	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	429029	157497606	91753015	151	39145											
FCRL4	83417	broad.mit.edu	37	chr1	157566160	157566160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagagagtaaagagccaGccatcagcgtaggcgaagag	14	7	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157566160	T	T	157566160	1	4	24	0	1	0	0	0	0	0	0	0	5854	986	34	3		3	FCRL4	1	157566160	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	68554	157566160	91684461	152	39146											
FCRL2	79368	broad.mit.edu	37	chr1	157737207	157737207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaagattgggggagagcCtctcagggcctcacagtgaa	14	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157737207	A	A	157737207	3	1	24	1	0	0	0	0	1	0	0	0	5852	681	24	2	578	2	FCRL2	1	157737207	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	171047	157737207	91513414	153	39147											
CD1D	912	broad.mit.edu	37	chr1	158152114	158152114	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcaaggtcagcctgccttCcttactccctgcattccact	6	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158152114	A	A	158152114	1	1	24	0	1	0	0	0	0	0	0	0	3007	870	30	3		3	CD1D	1	158152114	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	414907	158152114	91098507	154	39148											
CD1E	913	broad.mit.edu	37	chr1	158325000	158325000	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatttcccagcaaatttttCttcccttgaatctctttact	3	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158325000	G	G	158325000	1	3	24	0	1	0	0	0	0	0	0	0	3008	928	32	4		4	CD1E	1	158325000	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	172886	158325000	90925621	155	39149											
OR10K1	391109	broad.mit.edu	37	chr1	158436129	158436129	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgcctctttcatctacTtaaggcccaagactaattac	6	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158436129	A	A	158436129	3	1	24	1	0	0	0	0	1	0	0	0	11007	1606	56	5	780	5	OR10K1	1	158436129	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	111129	158436129	90814492	156	39150											
OR10R2	343406	broad.mit.edu	37	chr1	158450221	158450221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagtaaatttagttttcaGcctccctttttgtagcgcca	7	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450221	T	T	158450221	3	4	24	1	0	0	0	0	1	0	0	0	11011	971	34	3	556	3	OR10R2	1	158450221	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	14092	158450221	90800400	157	39151											
OR10Z1	128368	broad.mit.edu	37	chr1	158576401	158576401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatagccatctgcacacccCcatgtacctcttcctttcct	5	17	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158576401	A	A	158576401	3	1	24	1	0	0	0	0	1	0	0	0	11017	623	22	2	175	2	OR10Z1	1	158576401	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	126180	158576401	90674220	158	39152											
SPTA1	6708	broad.mit.edu	37	chr1	158605574	158605574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaacttgtcatttgagaaGggacttaaggagatagatag	12	3	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158605574	T	T	158605574	1	4	24	0	1	0	0	0	0	0	0	0	15234	1015	35	2		2	SPTA1	1	158605574	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	29173	158605574	90645047	159	39153											
SPTA1	6708	broad.mit.edu	37	chr1	158609348	158609348	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tatttctattctgcccagagGagagggatgccaacactact	9	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158609348	C	C	158609348	1	2	24	0	1	0	0	0	0	0	0	0	15234	1189	41	4		4	SPTA1	1	158609348	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3774	158609348	90641273	160	39154											
SPTA1	6708	broad.mit.edu	37	chr1	158636228	158636228	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatcctccagccagcgctGcaaatcttctgcattatttt	5	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158636228	T	T	158636228	3	4	24	1	0	0	0	0	1	0	0	0	15234	1328	46	3	5309	3	SPTA1	1	158636228	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	26880	158636228	90614393	161	39155											
SPTA1	6708	broad.mit.edu	37	chr1	158645926	158645926	+	Intron	DEL	C	-	-													gcaataaaggggagggatttCccaccaataagtagcctgca							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158645926	-	-	158645926	6	5	24	0	1	1	0	1	0	0	0	0	15234	870	30	0		0	SPTA1	1	158645926	Intron	DEL	C	TCGA-05-4427-01A-21D-1855-08	9698	158645926	90604695	162	39156											
OR6K3	391114	broad.mit.edu	37	chr1	158686969	158686969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgtattaacctccagGcttgttcaacactttttgaa	7	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158686969	T	T	158686969	3	4	24	1	0	0	0	0	1	0	0	0	11297	1203	42	3	12	3	OR6K3	1	158686969	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	41043	158686969	90563652	163	39157											
OR6N1	128372	broad.mit.edu	37	chr1	158735965	158735965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgaatgcgattggggcCacagaatgggaggcgtgaaa	17	6	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158735965	A	A	158735965	3	1	24	1	0	0	0	0	1	0	0	0	11300	594	21	2	433	2	OR6N1	1	158735965	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	48996	158735965	90514656	164	39158											
AIM2	9447	broad.mit.edu	37	chr1	159042907	159042907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcaaagagacaggtgcaCtaagttagcaaacaaattcc	11	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159042907	A	A	159042907	1	1	24	0	1	0	0	0	0	0	0	0	432	580	20	3		3	AIM2	1	159042907	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	306942	159042907	90207714	165	39159											
DARC	2532	broad.mit.edu	37	chr1	159176165	159176165	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctattctgccaccaggccacCcgcaccctcttgccctctct	5	21	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159176165	T	T	159176165	2	4	24	1	0	0	0	0	0	0	0	1	4273	610	22	4		4	DARC	1	159176165	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	133258	159176165	90074456	166	39160											
OR10J5	127385	broad.mit.edu	37	chr1	159505255	159505255	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaaagtttcatgactggGtaaatgtcacaaaagaagtg	10	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159505255	T	T	159505255	4	4	24	1	0	0	0	0	0	1	0	0	11006	1256	44	3	388	3	OR10J5	1	159505255	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	329090	159505255	89745366	167	39161											
DCAF8	50717	broad.mit.edu	37	chr1	160209920	160209920	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctcttcctctgagcggTcatggactcgattttcatca	7	13	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160209920	G	G	160209920	3	3	24	1	0	0	0	0	1	0	0	0	4309	1667	58	5	1547	5	DCAF8	1	160209920	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	704665	160209920	89040701	168	39162											
DCAF8	50717	broad.mit.edu	37	chr1	160209950	160209950	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattttcatcattaatggagTaatgaccagtgtcctccatg	8	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160209950	A	A	160209950	3	1	24	1	0	0	0	0	1	0	0	0	4309	1638	57	5	1577	5	DCAF8	1	160209950	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	30	160209950	89040671	169	39163											
DEDD	9191	broad.mit.edu	37	chr1	161094006	161094006	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcagctgcagcacctggcGaaagttactttcatcacagc	9	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161094006	A	A	161094006	3	1	24	1	0	0	0	0	1	0	0	0	4417	1058	37	4	725	4	DEDD	1	161094006	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	884056	161094006	88156615	170	39164											
NDUFS2	4720	broad.mit.edu	37	chr1	161183230	161183230	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgagggctaccaagttcctCcaggagccacatatactgcc	9	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161183230	T	T	161183230	3	4	24	1	0	0	0	0	1	0	0	0	10387	855	30	4	1219	4	NDUFS2	1	161183230	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	89224	161183230	88067391	171	39165											
MPZ	4359	broad.mit.edu	37	chr1	161275975	161275975	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcactgcaagaagagagacTgctgtacgtttggcctcgcc	12	11	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161275975	G	G	161275975	1	3	24	0	1	0	0	0	0	0	0	0	9842	1595	55	5		5	MPZ	1	161275975	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	92745	161275975	87974646	172	39166											
ATF6	22926	broad.mit.edu	37	chr1	161753749	161753749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataagtttttattgtccaGtgggtaaaacctttcctcca	6	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161753749	T	T	161753749	1	4	24	0	1	0	0	0	0	0	0	0	1088	1044	36	3		3	ATF6	1	161753749	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	477774	161753749	87496872	173	39167											
TMCO1	54499	broad.mit.edu	37	chr1	165697284	165697284	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaacttcccagaaggaggTggtgggccaagaaatccacc	13	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165697284	G	G	165697284	2	3	24	1	0	0	0	0	0	0	0	1	16118	1683	59	5		5	TMCO1	1	165697284	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	3943535	165697284	83553337	174	39168											
DUSP27	92235	broad.mit.edu	37	chr1	167095143	167095143	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaccgtgcgtaagaagCgggccatctaccccaatgag	12	11	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167095143	A	A	167095143	2	1	24	1	0	0	0	0	0	0	0	1	4864	759	27	3		3	DUSP27	1	167095143	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1397859	167095143	82155478	175	39169											
RCSD1	92241	broad.mit.edu	37	chr1	167599653	167599653	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgccgcagagtcggcaccTgaaggacatggaggtaaagg	15	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167599653	A	A	167599653	1	1	24	0	1	0	0	0	0	0	0	0	13293	1595	55	5		5	RCSD1	1	167599653	5'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	504510	167599653	81650968	176	39170											
ADCY10	55811	broad.mit.edu	37	chr1	167803155	167803155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgacttctacttctatGgaaaggcctaagatatataa	9	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167803155	T	T	167803155	1	4	24	0	1	0	0	0	0	0	0	0	293	1363	47	2		2	ADCY10	1	167803155	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	203502	167803155	81447466	177	39171											
TIPRL	261726	broad.mit.edu	37	chr1	168169343	168169343	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaccttggctatttgtaaGgggttatttttattatgaga	10	4	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168169343	T	T	168169343	1	4	24	0	1	0	0	0	0	0	0	0	16049	1015	35	2		2	TIPRL	1	168169343	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	366188	168169343	81081278	178	39172											
SELL	6402	broad.mit.edu	37	chr1	169677594	169677594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctttagtttgtggcaggCgtcatcgttccatttgcctg	11	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169677594	A	A	169677594	3	1	24	1	0	0	0	0	1	0	0	0	14129	768	27	3	710	3	SELL	1	169677594	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1508251	169677594	79573027	179	39173											
FMO4	2329	broad.mit.edu	37	chr1	171310527	171310527	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggtgtgattaatgaaaGgtcctccctcttttttcctc	9	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171310527	C	C	171310527	1	2	24	0	1	0	0	0	0	0	0	0	6015	1015	35	4		4	FMO4	1	171310527	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1632933	171310527	77940094	180	39174											
SLC9A11	284525	broad.mit.edu	37	chr1	173486577	173486577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctcccaatagctggttGggtgactaagatgtcaaaac	9	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173486577	T	T	173486577	1	4	24	0	1	0	0	0	0	0	0	0	14825	1363	47	2		2	SLC9A11	1	173486577	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2176050	173486577	75764044	181	39175											
CACYBP	27101	broad.mit.edu	37	chr1	174977926	174977926	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtttgtctttatggataatGtatttctgctttcaactgtc	7	6	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174977926	C	C	174977926	1	2	24	0	1	0	0	0	0	0	0	0	2590	1392	48	4		4	CACYBP	1	174977926	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1491349	174977926	74272695	182	39176											
TNR	7143	broad.mit.edu	37	chr1	175299314	175299314	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcctcttggccatcccgcAtgtccacgcgcagctcatag	10	17	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175299314	T	T	175299314	3	4	24	1	0	0	0	0	1	0	0	0	16461	217	8	5	399	5	TNR	1	175299314	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	321388	175299314	73951307	183	39177											
TNR	7143	broad.mit.edu	37	chr1	175304848	175304848	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaataaggaggctttaccCagccagaactcatcctccac	7	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175304848	A	A	175304848	2	1	24	1	0	0	0	0	0	0	0	1	16461	608	21	2		2	TNR	1	175304848	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	5534	175304848	73945773	184	39178											
PAPPA2	60676	broad.mit.edu	37	chr1	176668590	176668590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatagagattgatgcagCactcctgacttctcagcccc	10	12	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176668590	A	A	176668590	3	1	24	1	0	0	0	0	1	0	0	0	11527	710	25	3	3180	3	PAPPA2	1	176668590	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1363742	176668590	72582031	185	39179											
ASTN1	460	broad.mit.edu	37	chr1	176845592	176845592	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggttgttctattcaactctCttggtccttctgtcctcata	6	11	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176845592	A	A	176845592	1	1	24	0	1	0	0	0	0	0	0	0	1068	928	32	3		3	ASTN1	1	176845592	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	177002	176845592	72405029	186	39180											
FAM5B	57795	broad.mit.edu	37	chr1	177247898	177247898	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcgctgccatcgccagccTcgcttccgcctgcccaagga	10	18	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177247898	A	A	177247898	2	1	24	1	0	0	0	0	0	0	0	1	5644	1538	54	5		5	FAM5B	1	177247898	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	402306	177247898	72002723	187	39181											
RALGPS2	55103	broad.mit.edu	37	chr1	178863068	178863068	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatagttctgcagaatcagAagatttggcagtacatttat	8	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178863068	T	T	178863068	3	4	24	1	0	0	0	0	1	0	0	0	13126	246	9	5	1398	5	RALGPS2	1	178863068	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1615170	178863068	70387553	188	39182											
TDRD5	163589	broad.mit.edu	37	chr1	179561672	179561673	+	Intron	DNP	GG	TT	TT													gttatttgtatcccactattGgtttttttttaaatcttttt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179561673	TT	TT	179561672	1	4	24	0	1	0	0	0	0	0	0	0	15855	1363	47	2		2	TDRD5	1	179561672	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	698604	179561672	69688949	189	39183											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179815899	179815899	+	Frame_Shift_Del	DEL	G	-	-													ggcacttgctgggctggagaGgaatagtagctattcacaga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179815899	-	-	179815899	7	5	24	1	0	1	0	1	0	0	0	0	16497	987	35	0	696	0	TOR1AIP2	1	179815899	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	254227	179815899	69434722	190	39184											
XPR1	9213	broad.mit.edu	37	chr1	180772791	180772791	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatggcacctttaagtaaatGagaaatttcaataaatggaa	7	4	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180772791	T	T	180772791	1	4	24	0	1	0	0	0	0	0	0	0	17578	1305	45	3		3	XPR1	1	180772791	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	956892	180772791	68477830	191	39185											
NPL	80896	broad.mit.edu	37	chr1	182772963	182772963	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcagtctttagaaggtatAtcttacctggttaccagcca	8	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182772963	G	G	182772963	1	3	24	0	1	0	0	0	0	0	0	0	10680	464	16	5		5	NPL	1	182772963	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2000172	182772963	66477658	192	39186											
SMG7	9887	broad.mit.edu	37	chr1	183507602	183507602	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatagctgaagtacctttatCattgccagtgattgcagtat	9	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183507602	T	T	183507602	1	4	24	0	1	0	0	0	0	0	0	0	14912	841	29	4		4	SMG7	1	183507602	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	734639	183507602	65743019	193	39187											
PRG4	10216	broad.mit.edu	37	chr1	186277184	186277184	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcctgctccaactacccCtaaggggactgctccaacta	9	15	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186277184	T	T	186277184	3	4	24	1	0	0	0	0	1	0	0	0	12587	681	24	4	2355	4	PRG4	1	186277184	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2769582	186277184	62973437	194	39188											
PTGS2	5743	broad.mit.edu	37	chr1	186648545	186648545	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacatacacctcggttttgAcatgggtgggaacagcaagg	12	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186648545	G	G	186648545	2	3	24	1	0	0	0	0	0	0	0	1	12862	273	10	5		5	PTGS2	1	186648545	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	371361	186648545	62602076	195	39189											
PLA2G4A	5321	broad.mit.edu	37	chr1	186862165	186862165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatactccagatccctatgtGgaactttttatctctacaac	5	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186862165	T	T	186862165	2	4	24	1	0	0	0	0	0	0	0	1	12096	1335	47	2		2	PLA2G4A	1	186862165	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	213620	186862165	62388456	196	39190											
FAM5C	339479	broad.mit.edu	37	chr1	190203494	190203494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaattaatgaaattttacCaacataccttgcaactgaat	5	7	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190203494	A	A	190203494	1	1	24	0	1	0	0	0	0	0	0	0	5645	609	21	2		2	FAM5C	1	190203494	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3341329	190203494	59047127	197	39191											
CDC73	79577	broad.mit.edu	37	chr1	193205393	193205393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctacttgtagggaccgcGttgtagccgtttttgtgcag	12	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193205393	T	T	193205393	3	4	24	1	0	0	0	0	1	0	0	0	3115	1145	40	3	1382	3	CDC73	1	193205393	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3001899	193205393	56045228	198	39192											
KCNT2	343450	broad.mit.edu	37	chr1	196250051	196250051	+	Frame_Shift_Del	DEL	G	-	-													caatgggaacatctccagtaGaagaacacaacttctgataa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196250051	-	-	196250051	7	5	24	1	0	1	0	1	0	0	0	0	8162	942	33	0	574	0	KCNT2	1	196250051	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	3044658	196250051	53000570	199	39193											
KCNT2	343450	broad.mit.edu	37	chr1	196288558	196288558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtaacaaggcacagcaCatgacaaaccacaggacact	8	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196288558	A	A	196288558	1	1	24	0	1	0	0	0	0	0	0	0	8162	493	17	3		3	KCNT2	1	196288558	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	38507	196288558	52962063	200	39194											
KCNT2	343450	broad.mit.edu	37	chr1	196302956	196302956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacccagtaatcttacaCcttagagtatctgaacatac	4	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196302956	A	A	196302956	1	1	24	0	1	0	0	0	0	0	0	0	8162	522	18	3		3	KCNT2	1	196302956	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	14398	196302956	52947665	201	39195											
CFH	3075	broad.mit.edu	37	chr1	196645094	196645094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaacacacattatgtcaaCgttctgttattttttggttt	6	6	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196645094	A	A	196645094	1	1	24	0	1	0	0	0	0	0	0	0	3313	551	19	3		3	CFH	1	196645094	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	342138	196645094	52605527	202	39196											
ASPM	259266	broad.mit.edu	37	chr1	197070690	197070690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatactgcctatacattctgTaggtgctttgtattacgata	7	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197070690	C	C	197070690	3	2	24	1	0	0	0	0	1	0	0	0	1060	1638	57	5	2786	5	ASPM	1	197070690	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	425596	197070690	52179931	203	39197											
DENND1B	163486	broad.mit.edu	37	chr1	197659335	197659335	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcgatgtcaagaatgtgtCtgtcaaagatactcgtcatg	9	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197659335	A	A	197659335	1	1	24	0	1	0	0	0	0	0	0	0	4467	928	32	3		3	DENND1B	1	197659335	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	588645	197659335	51591286	204	39198											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200817577	200817577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatctcctcatacacctcaGccagaccaaattgctaatgg	5	13	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200817577	T	T	200817577	3	4	24	1	0	0	0	0	1	0	0	0	2638	962	34	3	1722	3	CAMSAP1L1	1	200817577	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3158242	200817577	48433044	205	39199											
IGFN1	91156	broad.mit.edu	37	chr1	201196129	201196129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagtgctgcatgagctgtGccgtgcagggctcgccccgg	17	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201196129	T	T	201196129	3	4	24	1	0	0	0	0	1	0	0	0	7660	1319	46	3	10992	3	IGFN1	1	201196129	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	378552	201196129	48054492	206	39200											
SYT2	127833	broad.mit.edu	37	chr1	202574945	202574945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagaggtgaagagggcaggGtgagcatccagaggtcgtct	18	7	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202574945	T	T	202574945	1	4	24	0	1	0	0	0	0	0	0	0	15593	1276	44	3		3	SYT2	1	202574945	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1378816	202574945	46675676	207	39201											
KLHL12	59349	broad.mit.edu	37	chr1	202888819	202888819	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcatgattaagtttacacTattaattttcaacctttcca	3	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202888819	A	A	202888819	1	1	24	0	1	0	0	0	0	0	0	0	8439	1537	53	5		5	KLHL12	1	202888819	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	313874	202888819	46361802	208	39202											
DSTYK	25778	broad.mit.edu	37	chr1	205171763	205171764	+	Intron	DNP	CC	AA	AA													ctctgccacattgagatgatCcttactgaaaaggaacagat							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	205171764	AA	AA	205171763	1	1	24	0	1	0	0	0	0	0	0	0	4825	870	30	3		3	DSTYK	1	205171763	Intron	DNP	CC	TCGA-05-4427-01A-21D-1855-08	2282944	205171763	44078858	209	39203											
IKBKE	9641	broad.mit.edu	37	chr1	206650076	206650076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccagcaaaaagcgttcgGggtgactgtggatctctgga	14	10	1	1	rs147887008		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206650076	T	T	206650076	3	4	24	1	0	0	0	0	1	0	0	0	7682	1232	43	2	614	2	IKBKE	1	206650076	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1478313	206650076	42600545	210	39204											
PIGR	5284	broad.mit.edu	37	chr1	207107960	207107960	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttggctgggcagggcctGgcagcccgtgttattccact	14	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207107960	A	A	207107960	4	1	24	1	0	0	0	0	0	1	0	0	11992	1357	47	4	808	4	PIGR	1	207107960	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	457884	207107960	42142661	211	39205											
CR1	1378	broad.mit.edu	37	chr1	207758216	207758216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgctgtgaactttctgttcGtgctggtcagtatccacttc	9	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207758216	A	A	207758216	3	1	24	1	0	0	0	0	1	0	0	0	3872	1145	40	4	5655	4	CR1	1	207758216	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	650256	207758216	41492405	212	39206											
IRF6	3664	broad.mit.edu	37	chr1	209965773	209965773	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggcgccatgggagaacCtaaaacaaaagcatatggtg	13	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209965773	A	A	209965773	5	1	24	1	0	0	0	0	0	0	1	0	7904	695	24	2	911	2	IRF6	1	209965773	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	2207557	209965773	39284848	213	39207											
USH2A	7399	broad.mit.edu	37	chr1	215803338	215803338	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtgttagccaggatggtctCgatctcctgaccttgtgatc	11	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215803338	A	A	215803338	1	1	24	0	1	0	0	0	0	0	0	0	17162	899	31	3		3	USH2A	1	215803338	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	5837565	215803338	33447283	214	39208											
USH2A	7399	broad.mit.edu	37	chr1	215916493	215916493	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atactttttcataaaagcccAggccaagtgtctgaaagact	7	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215916493	T	T	215916493	1	4	24	0	1	0	0	0	0	0	0	0	17162	203	7	5		5	USH2A	1	215916493	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	113155	215916493	33334128	215	39209											
USH2A	7399	broad.mit.edu	37	chr1	216219777	216219777	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actctagaggtcttacctgtGactatgtagttctcctcact	7	11	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216219777	T	T	216219777	2	4	24	1	0	0	0	0	0	0	0	1	17162	1277	45	3		3	USH2A	1	216219777	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	303284	216219777	33030844	216	39210											
USH2A	7399	broad.mit.edu	37	chr1	216243506	216243506	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgcggggtggacgggtgcTgtcctcactataggctttca	14	10	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216243506	G	G	216243506	3	3	24	1	0	0	0	0	1	0	0	0	17162	1580	55	5	9794	5	USH2A	1	216243506	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	23729	216243506	33007115	217	39211											
USH2A	7399	broad.mit.edu	37	chr1	216372967	216372967	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatctcagccttggattcttAccatttagttccgctggtgg	9	10	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216372967	T	T	216372967	5	4	24	1	0	0	0	0	0	0	1	0	17162	405	14	5	12033	5	USH2A	1	216372967	Splice_Site	SNP	A	TCGA-05-4427-01A-21D-1855-08	129461	216372967	32877654	218	39212											
USH2A	7399	broad.mit.edu	37	chr1	216595681	216595681	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaactgggcaattcatgtTtacaaaaaagcattctcctc	6	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216595681	C	C	216595681	1	2	24	0	1	0	0	0	0	0	0	0	17162	1856	64	5		5	USH2A	1	216595681	5'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	222714	216595681	32654940	219	39213											
LYPLAL1	127018	broad.mit.edu	37	chr1	219352503	219352503	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcaggtgattctggacaaGgattaagaatgtggatcaag	12	5	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219352503	A	A	219352503	3	1	24	1	0	0	0	0	1	0	0	0	9206	1001	35	4	112	4	LYPLAL1	1	219352503	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2756822	219352503	29898118	220	39214											
BPNT1	10380	broad.mit.edu	37	chr1	220236169	220236169	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacacagtcagtaaccaacTtgttgctatgggatcgagta	9	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220236169	C	C	220236169	3	2	24	1	0	0	0	0	1	0	0	0	1503	1609	56	5	336	5	BPNT1	1	220236169	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	883666	220236169	29014452	221	39215											
MARK1	4139	broad.mit.edu	37	chr1	220823918	220823918	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttctttggctttccacaAatatatttataattttttaa	2	6	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220823918	G	G	220823918	1	3	24	0	1	0	0	0	0	0	0	0	9404	29	1	5		5	MARK1	1	220823918	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	587749	220823918	28426703	222	39216											
MOSC2	54996	broad.mit.edu	37	chr1	220935067	220935067	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaagtggttcaccaacttcTtgaaaactgaagcgtataga	8	8	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220935067	A	A	220935067	3	1	24	1	0	0	0	0	1	0	0	0	9808	1606	56	5	524	5	MOSC2	1	220935067	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	111149	220935067	28315554	223	39217											
TAF1A	9015	broad.mit.edu	37	chr1	222753219	222753219	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgagcttccaaataatctgtCaaagcagaaattactgccaa	6	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222753219	A	A	222753219	1	1	24	0	1	0	0	0	0	0	0	0	15638	841	29	3		3	TAF1A	1	222753219	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1818152	222753219	26497402	224	39218											
PARP1	142	broad.mit.edu	37	chr1	226570900	226570900	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcctaaaaaatattaagTtttagttaagaagccagctc	5	6	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226570900	C	C	226570900	1	2	24	0	1	0	0	0	0	0	0	0	11548	1740	60	5		5	PARP1	1	226570900	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3817681	226570900	22679721	225	39219											
PSEN2	5664	broad.mit.edu	37	chr1	227076648	227076648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccctctggtgctgcagCaggcctacctcatcatgatc	11	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227076648	A	A	227076648	3	1	24	1	0	0	0	0	1	0	0	0	12757	711	25	3	703	3	PSEN2	1	227076648	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	505748	227076648	22173973	226	39220											
ZNF678	339500	broad.mit.edu	37	chr1	227842034	227842034	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttttatttttatttctttCagctattttatcttattcca	1	7	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227842034	T	T	227842034	1	4	24	0	1	0	0	0	0	0	0	0	18212	841	29	4		4	ZNF678	1	227842034	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	765386	227842034	21408587	227	39221											
C1orf35	79169	broad.mit.edu	37	chr1	228288678	228288678	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctgctccagagctagctGtcaagtctttagccccacag	10	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228288678	A	A	228288678	1	1	24	0	1	0	0	0	0	0	0	0	2060	1392	48	4		4	C1orf35	1	228288678	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	446644	228288678	20961943	228	39222											
HIST3H2A	92815	broad.mit.edu	37	chr1	228645071	228645071	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctcgagatagtaggtgGctctgaaaagagcctttatg	11	6	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228645071	T	T	228645071	1	4	24	0	1	0	0	0	0	0	0	0	7249	1218	42	3		3	HIST3H2A	1	228645071	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	356393	228645071	20605550	229	39223											
PCNXL2	80003	broad.mit.edu	37	chr1	233424944	233424944	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcccactgaactttttctCcaattcacatactagccgga	4	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233424944	A	A	233424944	1	1	24	0	1	0	0	0	0	0	0	0	11686	870	30	3		3	PCNXL2	1	233424944	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4779873	233424944	15825677	230	39224											
KCNK1	3775	broad.mit.edu	37	chr1	233802492	233802492	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccggtcctctacttccaCatccgctggggcttctccaa	9	16	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233802492	T	T	233802492	2	4	24	1	0	0	0	0	0	0	0	1	8128	477	17	4		4	KCNK1	1	233802492	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	377548	233802492	15448129	231	39225											
LYST	1130	broad.mit.edu	37	chr1	235840794	235840794	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacctgtttaaatcccaTatgatgcaggttccgtctct	7	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235840794	A	A	235840794	2	1	24	1	0	0	0	0	0	0	0	1	9216	1396	49	5		5	LYST	1	235840794	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	2038302	235840794	13409827	232	39226											
LYST	1130	broad.mit.edu	37	chr1	235973040	235973040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatattctaatttttaaagCtgctctaagcaattcagtta	5	7	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235973040	A	A	235973040	3	1	24	1	0	0	0	0	1	0	0	0	9216	797	28	3	10523	3	LYST	1	235973040	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	132246	235973040	13277581	233	39227											
NID1	4811	broad.mit.edu	37	chr1	236144000	236144000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagaaataataaggatGcatgagaaaaagtttatgaa	10	1	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236144000	T	T	236144000	1	4	24	0	1	0	0	0	0	0	0	0	10509	1334	46	3		3	NID1	1	236144000	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	170960	236144000	13106621	234	39228											
NID1	4811	broad.mit.edu	37	chr1	236180482	236180482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctgaaaactggtagccCtccacacactcgcagcggaa	8	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236180482	A	A	236180482	3	1	24	1	0	0	0	0	1	0	0	0	10509	680	24	2	1567	2	NID1	1	236180482	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	36482	236180482	13070139	235	39229											
GPR137B	7107	broad.mit.edu	37	chr1	236343209	236343209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcaagtgactgccatcGgtgtcaccgtgatactgctt	11	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236343209	T	T	236343209	3	4	24	1	0	0	0	0	1	0	0	0	6711	1116	39	1	732	1	GPR137B	1	236343209	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	162727	236343209	12907412	236	39230											
RYR2	6262	broad.mit.edu	37	chr1	237669979	237669979	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcttattgcatttgtttctGatgtgtcttttttctttttg	6	5	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237669979	T	T	237669979	1	4	24	0	1	0	0	0	0	0	0	0	13880	1305	45	3		3	RYR2	1	237669979	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1326770	237669979	11580642	237	39231											
RYR2	6262	broad.mit.edu	37	chr1	237804305	237804305	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgctcctgagatgcatgtGagtttctgggagttcaggag	15	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237804305	T	T	237804305	1	4	24	0	1	0	0	0	0	0	0	0	13880	1305	45	3		3	RYR2	1	237804305	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	134326	237804305	11446316	238	39232											
RYR2	6262	broad.mit.edu	37	chr1	237947745	237947745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgacggtcaggtcggccCtgtttgcgctcaggtacaat	12	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237947745	A	A	237947745	3	1	24	1	0	0	0	0	1	0	0	0	13880	680	24	2	13091	2	RYR2	1	237947745	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	143440	237947745	11302876	239	39233											
RYR2	6262	broad.mit.edu	37	chr1	237947932	237947932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttttcagaggctttttccGcatcatttgcagcctgctgc	9	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947932	T	T	237947932	3	4	24	1	0	0	0	0	1	0	0	0	13880	1087	38	3	13278	3	RYR2	1	237947932	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	187	237947932	11302689	240	39234											
ZP4	57829	broad.mit.edu	37	chr1	238049329	238049329	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgccctgctgggagctGtattttagttggggagacca	13	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238049329	A	A	238049329	1	1	24	0	1	0	0	0	0	0	0	0	18347	1392	48	4		4	ZP4	1	238049329	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	101397	238049329	11201292	241	39235											
ZP4	57829	broad.mit.edu	37	chr1	238053757	238053757	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaggcaagtcatcaaacTtaccccaagctattagtaca	6	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238053757	G	G	238053757	1	3	24	0	1	0	0	0	0	0	0	0	18347	1624	56	5		5	ZP4	1	238053757	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	4428	238053757	11196864	242	39236											
CHRM3	1131	broad.mit.edu	37	chr1	240070921	240070921	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctccagacggtaccaccgAtgaccctctgggaggtcata	10	14	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240070921	C	C	240070921	3	2	24	1	0	0	0	0	1	0	0	0	3409	333	12	5	172	5	CHRM3	1	240070921	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2017164	240070921	9179700	243	39237											
FMN2	56776	broad.mit.edu	37	chr1	240256749	240256749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggatcaagaggcggcCggaaccctccctgagccgag	13	16	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240256749	A	A	240256749	3	1	24	1	0	0	0	0	1	0	0	0	6008	652	23	1	1342	1	FMN2	1	240256749	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	185828	240256749	8993872	244	39238											
FMN2	56776	broad.mit.edu	37	chr1	240492626	240492626	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttttcttcttaacttggcTttatttccttaggttccttt	4	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240492626	A	A	240492626	1	1	24	0	1	0	0	0	0	0	0	0	6008	1624	56	5		5	FMN2	1	240492626	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	235877	240492626	8757995	245	39239											
FMN2	56776	broad.mit.edu	37	chr1	240555840	240555840	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaagaggcagaggaaaatTcactgacagagactcataaa	9	8	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240555840	G	G	240555840	3	3	24	1	0	0	0	0	1	0	0	0	6008	1783	62	5	4946	5	FMN2	1	240555840	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	63214	240555840	8694781	246	39240											
RGS7	6000	broad.mit.edu	37	chr1	240966167	240966167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaataattataactgagaaCtaggccaagaaaaaacaact	5	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240966167	A	A	240966167	1	1	24	0	1	0	0	0	0	0	0	0	13419	580	20	3		3	RGS7	1	240966167	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	410327	240966167	8284454	247	39241											
ZNF238	10472	broad.mit.edu	37	chr1	244217638	244217638	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaaaagggacttggcggccGagcctgggaacatgtggatg	17	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244217638	T	T	244217638	4	4	24	1	0	0	0	0	0	1	0	0	17916	1059	37	3	568	3	ZNF238	1	244217638	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3251471	244217638	5032983	248	39242											
TFB2M	64216	broad.mit.edu	37	chr1	246704239	246704239	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaagacaagaacagttaCcttctgctgaaaggatgtga	11	7	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246704239	A	A	246704239	1	1	24	0	1	0	0	0	0	0	0	0	15917	522	18	3		3	TFB2M	1	246704239	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	2486601	246704239	2546382	249	39243											
ZNF695	57116	broad.mit.edu	37	chr1	247163448	247163448	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actacaggcaaggagagacaGtgaagagaactggctctgac	13	8	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247163448	A	A	247163448	1	1	24	0	1	0	0	0	0	0	0	0	18225	1044	36	4		4	ZNF695	1	247163448	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	459209	247163448	2087173	250	39244											
NLRP3	114548	broad.mit.edu	37	chr1	247611817	247611817	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggtaggagtggaaacGgggctgccagacgccagtgt	16	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247611817	T	T	247611817	1	4	24	0	1	0	0	0	0	0	0	0	10573	1131	39	1		1	NLRP3	1	247611817	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	448369	247611817	1638804	251	39245											
OR13G1	441933	broad.mit.edu	37	chr1	247835538	247835538	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatagagtgcagctaccaccTtgtctctttcaaatgtatag	7	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247835538	G	G	247835538	3	3	24	1	0	0	0	0	1	0	0	0	11036	1609	56	5	121	5	OR13G1	1	247835538	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	223721	247835538	1415083	252	39246											
OR13G1	441933	broad.mit.edu	37	chr1	247835734	247835734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaataaagtcccctatggCcagggtaatatcagcaacat	8	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247835734	A	A	247835734	3	1	24	1	0	0	0	0	1	0	0	0	11036	739	26	3	317	3	OR13G1	1	247835734	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	196	247835734	1414887	253	39247											
OR1C1	26188	broad.mit.edu	37	chr1	247921131	247921131	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaatgatcattacattgaagGagacgtcagagcaagagagc	11	6	2	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247921131	C	C	247921131	3	2	24	1	0	0	0	0	1	0	0	0	11046	1174	41	4	368	4	OR1C1	1	247921131	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	85397	247921131	1329490	254	39248											
TRIM58	25893	broad.mit.edu	37	chr1	248031118	248031118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagcagttcagagtccaaCtcacactgtgtttttctttc	6	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248031118	A	A	248031118	1	1	24	0	1	0	0	0	0	0	0	0	16656	580	20	3		3	TRIM58	1	248031118	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	109987	248031118	1219503	255	39249											
OR2L8	391190	broad.mit.edu	37	chr1	248113076	248113076	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgacacgagtgagtcagaGaatctgctctgtgaaaatgt	11	8	3	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248113076	T	T	248113076	3	4	24	1	0	0	0	0	1	0	0	0	11103	942	33	3	919	3	OR2L8	1	248113076	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	81958	248113076	1137545	256	39250											
OR2L13	284521	broad.mit.edu	37	chr1	248166941	248166941	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatattccttattgcccatCtagggttatcaatcatttct	4	11	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248166941	A	A	248166941	1	1	24	0	1	0	0	0	0	0	0	0	11100	928	32	3		3	OR2L13	1	248166941	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	53865	248166941	1083680	257	39251											
OR2L3	391192	broad.mit.edu	37	chr1	248224642	248224642	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgttcctatggccgggTtctccttgctgtctaccaca	8	13	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248224642	G	G	248224642	3	3	24	1	0	0	0	0	1	0	0	0	11102	1725	60	5	661	5	OR2L3	1	248224642	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	57701	248224642	1025979	258	39252											
OR2L13	284521	broad.mit.edu	37	chr1	248247578	248247578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagaggaagcactctccaCcacccagtgtggggaggaag	13	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247578	A	A	248247578	1	1	24	0	1	0	0	0	0	0	0	0	11100	522	18	3		3	OR2L13	1	248247578	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	22936	248247578	1003043	259	39253											
OR2M3	127062	broad.mit.edu	37	chr1	248366706	248366706	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactgcttggctctgagtgcTttcttttggctgttatggct	11	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248366706	A	A	248366706	3	1	24	1	0	0	0	0	1	0	0	0	11105	1609	56	5	339	5	OR2M3	1	248366706	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	119128	248366706	883915	260	39254											
OR2M3	127062	broad.mit.edu	37	chr1	248367104	248367104	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actacttgttcctctcacctCttggtggtgggaatgtacta	9	10	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248367104	A	A	248367104	2	1	24	1	0	0	0	0	0	0	0	1	11105	900	32	3		3	OR2M3	1	248367104	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	398	248367104	883517	261	39255											
OR2T33	391195	broad.mit.edu	37	chr1	248436797	248436797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagaggaagcactctccaCcacccagtgtggggaggaag	13	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436797	A	A	248436797	3	1	24	1	0	0	0	0	1	0	0	0	11118	507	18	3	645	3	OR2T33	1	248436797	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	69693	248436797	813824	262	39256											
OR2G6	391211	broad.mit.edu	37	chr1	248685897	248685897	+	Nonstop_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacaaagccacaaggactAggaaacacctggaattctaa	9	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248685897	G	G	248685897	4	3	24	1	0	0	0	0	0	0	0	0	11094	434	15	5	952	5	OR2G6	1	248685897	Nonstop_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	249100	248685897	564724	263	39257											
OR2T34	127068	broad.mit.edu	37	chr1	248737322	248737322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgatcatgtgggaggagCaggtggccaaggccttcctg	15	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248737322	A	A	248737322	3	1	24	1	0	0	0	0	1	0	0	0	11119	710	25	3	223	3	OR2T34	1	248737322	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	51425	248737322	513299	264	39258											
ZNF692	55657	broad.mit.edu	37	chr1	249152402	249152402	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaggaggcaccactgcTccatgtggccgcccaggcgg	14	15	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	249152402	C	C	249152402	3	2	24	1	0	0	0	0	1	0	0	0	18224	1551	54	5	1496	5	ZNF692	1	249152402	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	415080	249152402	98219	265	39259											
TMEM18	129787	broad.mit.edu	37	chr2	675549	675549	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctgtagtctgtagcttcGggaggacaagcaggtgagga	16	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	675549	A	A	675549	4	1	24	1	0	0	0	0	0	1	0	0	16221	1124	39	4	299	4	TMEM18	2	675549	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08		675549	242523824	266	39260											
TPO	7173	broad.mit.edu	37	chr2	1488564	1488564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccagcttccaggagcaccCcgacctgcccgggctgtggc	13	18	0	0	rs150489706		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1488564	A	A	1488564	3	1	24	1	0	0	0	0	1	0	0	0	16534	623	22	2	1565	2	TPO	2	1488564	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	813015	1488564	241710809	267	39261											
MYT1L	23040	broad.mit.edu	37	chr2	1906743	1906743	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcctgttcttttggtacCcattgagtgaccaccaccgc	8	13	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1906743	A	A	1906743	1	1	24	0	1	0	0	0	0	0	0	0	10201	638	22	2		2	MYT1L	2	1906743	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	418179	1906743	241292630	268	39262											
MYT1L	23040	broad.mit.edu	37	chr2	1920954	1920954	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtttgcacccccaaggGtagcggtgagacgtggactt	16	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1920954	A	A	1920954	1	1	24	0	1	0	0	0	0	0	0	0	10201	1276	44	4		4	MYT1L	2	1920954	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	14211	1920954	241278419	269	39263											
RNASEH1	246243	broad.mit.edu	37	chr2	3593432	3593432	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcagcttcttcattgccTataaatcccgaatgaccagg	7	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3593432	C	C	3593432	3	2	24	1	0	0	0	0	1	0	0	0	13522	1512	53	5	60	5	RNASEH1	2	3593432	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1672478	3593432	239605941	270	39264											
RNF144A	9781	broad.mit.edu	37	chr2	7137104	7137104	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggacctggccctcgaccCgctggtgtcttgcaagctct	12	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7137104	T	T	7137104	3	4	24	1	0	0	0	0	1	0	0	0	13556	652	23	4	49	4	RNF144A	2	7137104	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3543672	7137104	236062269	271	39265											
ITGB1BP1	9270	broad.mit.edu	37	chr2	9552598	9552598	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattacagagtatcctcagTcccttcccaaataaaaacca	4	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9552598	G	G	9552598	1	3	24	0	1	0	0	0	0	0	0	0	7961	1682	58	5		5	ITGB1BP1	2	9552598	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2415494	9552598	233646775	272	39266											
GREB1	9687	broad.mit.edu	37	chr2	11696629	11696629	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtctctgctgagcgaagGctacacggcccttcctcctt	9	15	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11696629	T	T	11696629	1	4	24	0	1	0	0	0	0	0	0	0	6826	1218	42	3		3	GREB1	2	11696629	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	2144031	11696629	231502744	273	39267											
NBAS	51594	broad.mit.edu	37	chr2	15557783	15557783	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcacagagaaccagcaaAccaggaatattccgctccat	7	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15557783	C	C	15557783	2	2	24	1	0	0	0	0	0	0	0	1	10280	30	2	5		5	NBAS	2	15557783	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	3861154	15557783	227641590	274	39268											
GEN1	348654	broad.mit.edu	37	chr2	17947914	17947915	+	Missense_Mutation	DNP	GG	TT	TT													ggtttggatagagatgctctGgttggattagcaatacttct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	17947915	TT	TT	17947914	3	4	24	1	0	0	0	0	1	0	0	0	6399	1335	47	2	608	2	GEN1	2	17947914	Missense_Mutation	DNP	GG	TCGA-05-4427-01A-21D-1855-08	2390131	17947914	225251459	275	39269											
SDC1	6382	broad.mit.edu	37	chr2	20403687	20403687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtgtgaaggtcagcttGgctgggtcctgcaggggttg	20	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20403687	T	T	20403687	3	4	24	1	0	0	0	0	1	0	0	0	14064	1357	47	2	430	2	SDC1	2	20403687	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2455773	20403687	222795686	276	39270											
APOB	338	broad.mit.edu	37	chr2	21225048	21225048	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggaagtccttaagagcaaCtaacaggttcttgatcagac	9	8	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21225048	G	G	21225048	3	3	24	1	0	0	0	0	1	0	0	0	787	565	20	4	449	4	APOB	2	21225048	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	821361	21225048	221974325	277	39271											
POMC	5443	broad.mit.edu	37	chr2	25383997	25383997	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgatggcgtttttgaacaGcgtcaccaggggcgtctggc	15	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25383997	C	C	25383997	3	2	24	1	0	0	0	0	1	0	0	0	12337	962	34	4	50	4	POMC	2	25383997	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4158949	25383997	217815376	278	39272											
OTOF	9381	broad.mit.edu	37	chr2	26687776	26687776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggcccagtgaagacgcGgttggccaccttcactctcc	12	14	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26687776	T	T	26687776	3	4	24	1	0	0	0	0	1	0	0	0	11397	1116	39	1	1289	1	OTOF	2	26687776	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1303779	26687776	216511597	279	39273											
OTOF	9381	broad.mit.edu	37	chr2	26702453	26702453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtctacttcttcctcatCccccggctccttccggggcc	8	19	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26702453	A	A	26702453	3	1	24	1	0	0	0	0	1	0	0	0	11397	855	30	3	4461	3	OTOF	2	26702453	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	14677	26702453	216496920	280	39274											
OTOF	9381	broad.mit.edu	37	chr2	26725345	26725345	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgactgatggtgagatagtGaccatttctccttttactct	8	9	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26725345	T	T	26725345	1	4	24	0	1	0	0	0	0	0	0	0	11397	1305	45	3		3	OTOF	2	26725345	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	22892	26725345	216474028	281	39275											
C2orf18	54978	broad.mit.edu	37	chr2	27001208	27001208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcactgggctgggaggccttCcatgcactgcagatccttgg	14	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27001208	A	A	27001208	3	1	24	1	0	0	0	0	1	0	0	0	2180	854	30	3	967	3	C2orf18	2	27001208	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	275863	27001208	216198165	282	39276											
TMEM214	54867	broad.mit.edu	37	chr2	27261696	27261696	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaaggtgctggcacccGgtcctctccagcccacacgc	10	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27261696	A	A	27261696	1	1	24	0	1	0	0	0	0	0	0	0	16260	1131	39	4		4	TMEM214	2	27261696	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	260488	27261696	215937677	283	39277											
EMILIN1	11117	broad.mit.edu	37	chr2	27301983	27301983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgctgcctgctgacggCagctgcaggggccgccagct	14	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27301983	A	A	27301983	3	1	24	1	0	0	0	0	1	0	0	0	5135	710	25	3	52	3	EMILIN1	2	27301983	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	40287	27301983	215897390	284	39278											
C2orf53	339779	broad.mit.edu	37	chr2	27360750	27360750	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtggagctatgcagttcctCggggtgggaaggggactggc	19	7	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27360750	A	A	27360750	4	1	24	1	0	0	0	0	0	1	0	0	2196	893	31	3	794	3	C2orf53	2	27360750	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	58767	27360750	215838623	285	39279											
GTF3C2	2976	broad.mit.edu	37	chr2	27552213	27552213	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagcctgtcccagtcttcAccttccccctccacatacct	4	20	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27552213	T	T	27552213	1	4	24	0	1	0	0	0	0	0	0	0	6938	174	6	5		5	GTF3C2	2	27552213	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	191463	27552213	215647160	286	39280											
IFT172	26160	broad.mit.edu	37	chr2	27682470	27682470	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggaccctttaagcacactTcaacctacattttgagatct	5	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27682470	A	A	27682470	1	1	24	0	1	0	0	0	0	0	0	0	7627	1798	62	5		5	IFT172	2	27682470	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	130257	27682470	215516903	287	39281											
PLB1	151056	broad.mit.edu	37	chr2	28772895	28772895	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagagcccctatctgttcAgctacagaaacagcaactac	8	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28772895	T	T	28772895	3	4	24	1	0	0	0	0	1	0	0	0	12119	188	7	5	1122	5	PLB1	2	28772895	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1090425	28772895	214426478	288	39282											
ALK	238	broad.mit.edu	37	chr2	30143133	30143133	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacgccggagcttgcgcacGgagccgcccttcagcaccct	12	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30143133	A	A	30143133	2	1	24	1	0	0	0	0	0	0	0	1	525	1103	39	4		4	ALK	2	30143133	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1370238	30143133	213056240	289	39283											
XDH	7498	broad.mit.edu	37	chr2	31573112	31573112	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcagaggaaacaaaaatGggagagaacagtgtactgat	13	4	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31573112	A	A	31573112	1	1	24	0	1	0	0	0	0	0	0	0	17553	1363	47	4		4	XDH	2	31573112	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1429979	31573112	211626261	290	39284											
SLC30A6	55676	broad.mit.edu	37	chr2	32429011	32429011	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaagttgacaagatggtaGaagatgaagagggaatagaa	15	1	0	7			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32429011	A	A	32429011	1	1	24	0	1	0	0	0	0	0	0	0	14673	957	33	4		4	SLC30A6	2	32429011	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	855899	32429011	210770362	291	39285											
BIRC6	57448	broad.mit.edu	37	chr2	32715149	32715149	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgttagcttggtatcccAatactttgctccggacatgg	10	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32715149	T	T	32715149	3	4	24	1	0	0	0	0	1	0	0	0	1444	130	5	5	8307	5	BIRC6	2	32715149	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	286138	32715149	210484224	292	39286											
TTC27	55622	broad.mit.edu	37	chr2	32983498	32983498	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagtgctcgtgctcagcGctccaaagccctccttcatc	8	18	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32983498	A	A	32983498	3	1	24	1	0	0	0	0	1	0	0	0	16821	1087	38	4	1642	4	TTC27	2	32983498	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	268349	32983498	210215875	293	39287											
LTBP1	4052	broad.mit.edu	37	chr2	33487838	33487838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacttgagcctggtcaacCccagctgtctccaggcattt	8	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33487838	A	A	33487838	3	1	24	1	0	0	0	0	1	0	0	0	9160	623	22	2	2577	2	LTBP1	2	33487838	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	504340	33487838	209711535	294	39288											
CRIM1	51232	broad.mit.edu	37	chr2	36737268	36737268	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatctgtgacaagtattgTccacttggattgctgtacgt	9	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36737268	A	A	36737268	4	1	24	1	0	0	0	0	0	1	0	0	3905	1673	58	5	1678	5	CRIM1	2	36737268	Nonsense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	3249430	36737268	206462105	295	39289											
STRN	6801	broad.mit.edu	37	chr2	37105067	37105067	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtctgcttcattggccacCgtaaggcctgctagttctcc	10	13	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37105067	A	A	37105067	2	1	24	1	0	0	0	0	0	0	0	1	15447	639	23	1		1	STRN	2	37105067	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	367799	37105067	206094306	296	39290											
QPCT	25797	broad.mit.edu	37	chr2	37599640	37599641	+	Intron	DEL	TG	-	-													tgtgtgtgtgtgtgtgtgttTgtgtgtgtgtgcgtgcacag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37599641	-	-	37599640	6	5	24	0	1	1	0	1	0	0	0	0	12982	1827	63	0		0	QPCT	2	37599640	Intron	DEL	TG	TCGA-05-4427-01A-21D-1855-08	494573	37599640	205599733	297	39291											
FAM82A1	151393	broad.mit.edu	37	chr2	38224703	38224703	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgtcagactgattaccatCtgcaccaatccctgctgccg	8	14	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38224703	T	T	38224703	1	4	24	0	1	0	0	0	0	0	0	0	5683	928	32	4		4	FAM82A1	2	38224703	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	625063	38224703	204974670	298	39292											
ATL2	64225	broad.mit.edu	37	chr2	38570580	38570580	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggtcatcttcatgagcaaGaacaatctgtactggacatg	9	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38570580	A	A	38570580	3	1	24	1	0	0	0	0	1	0	0	0	1111	942	33	4	1718	4	ATL2	2	38570580	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	345877	38570580	204628793	299	39293											
SOS1	6654	broad.mit.edu	37	chr2	39216412	39216412	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaccaaatatactaactTgggccatggggcagagtaac	9	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39216412	A	A	39216412	2	1	24	1	0	0	0	0	0	0	0	1	15050	1826	63	5		5	SOS1	2	39216412	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	645832	39216412	203982961	300	39294											
MAP4K3	8491	broad.mit.edu	37	chr2	39499673	39499673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catacaaccatgtacaccttCgagggaatagctgattaaaa	7	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39499673	A	A	39499673	3	1	24	1	0	0	0	0	1	0	0	0	9353	884	31	3	919	3	MAP4K3	2	39499673	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	283261	39499673	203699700	301	39295											
SLC8A1	6546	broad.mit.edu	37	chr2	40401924	40401924	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataacatctggtgagaacagAcagtaaaagttagatagcat	9	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40401924	G	G	40401924	1	3	24	0	1	0	0	0	0	0	0	0	14820	290	10	5		5	SLC8A1	2	40401924	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	902251	40401924	202797449	302	39296											
EML4	27436	broad.mit.edu	37	chr2	42472648	42472648	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattttattttatagatgAtagtatttctgctgcaagta	6	3	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42472648	G	G	42472648	3	3	24	1	0	0	0	0	1	0	0	0	5141	333	12	5	35	5	EML4	2	42472648	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2070724	42472648	200726725	303	39297											
LRPPRC	10128	broad.mit.edu	37	chr2	44201548	44201548	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaacatcaaaagcatataActgcctaaataacaataaaa	3	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44201548	C	C	44201548	1	2	24	0	1	0	0	0	0	0	0	0	9052	58	2	5		5	LRPPRC	2	44201548	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1728900	44201548	198997825	304	39298											
SLC3A1	6519	broad.mit.edu	37	chr2	44502681	44502681	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagtcggtgagacatggctGaagataaaagcaagagagac	13	5	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44502681	C	C	44502681	3	2	24	1	0	0	0	0	1	0	0	0	14740	1291	45	4	9	4	SLC3A1	2	44502681	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	301133	44502681	198696692	305	39299											
PRKCE	5581	broad.mit.edu	37	chr2	46228589	46228589	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagaccaacgtggctccCaactgtggagtggatgccag	14	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46228589	A	A	46228589	2	1	24	1	0	0	0	0	0	0	0	1	12617	581	21	2		2	PRKCE	2	46228589	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1725908	46228589	196970784	306	39300											
C2orf61	285051	broad.mit.edu	37	chr2	47378505	47378506	+	Frame_Shift_Ins	INS	-	A	A													agtcaggaggcatatactgcINSggaagatcatttaggactgg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47378506	A	A	47378505	7	5	24	1	0	1	1	0	0	0	0	0	2202	755	27	0	490	0	C2orf61	2	47378505	Frame_Shift_Ins	INS	-	TCGA-05-4427-01A-21D-1855-08	1149916	47378505	195820868	307	39301											
MSH2	4436	broad.mit.edu	37	chr2	47702164	47702164	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttttatttttatacagGctatgtagaaccaatgcaga	7	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47702164	A	A	47702164	3	1	24	1	0	0	0	0	1	0	0	0	9964	1217	42	4	1806	4	MSH2	2	47702164	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	323659	47702164	195497209	308	39302											
PSME4	23198	broad.mit.edu	37	chr2	54125136	54125136	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgttcaaatttccagggCcttaaaaggaggaaaaataa	8	5	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54125136	A	A	54125136	2	1	24	1	0	0	0	0	0	0	0	1	12815	753	26	3		3	PSME4	2	54125136	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	6422972	54125136	189074237	309	39303											
EHBP1	23301	broad.mit.edu	37	chr2	63182783	63182783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccccattctgcaacagGcagctaagtgatgtgaggag	12	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63182783	T	T	63182783	3	4	24	1	0	0	0	0	1	0	0	0	5015	1194	42	3	2607	3	EHBP1	2	63182783	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	9057647	63182783	180016590	310	39304											
BMP10	27302	broad.mit.edu	37	chr2	69093488	69093488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccagacaccaagaccaGcatgtttctttctccctcat	4	17	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69093488	T	T	69093488	3	4	24	1	0	0	0	0	1	0	0	0	1463	962	34	3	728	3	BMP10	2	69093488	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5910705	69093488	174105885	311	39305											
BMP10	27302	broad.mit.edu	37	chr2	69093720	69093720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctgaaaaaagaaatttGcaaaaatcaggtttgcagtg	9	4	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69093720	T	T	69093720	1	4	24	0	1	0	0	0	0	0	0	0	1463	1334	46	3		3	BMP10	2	69093720	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	232	69093720	174105653	312	39306											
GFPT1	2673	broad.mit.edu	37	chr2	69565521	69565521	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcttttgccaagatatgcTagaattattagaaagaataa	7	5	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69565521	A	A	69565521	1	1	24	0	1	0	0	0	0	0	0	0	6409	1537	53	5		5	GFPT1	2	69565521	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	471801	69565521	173633852	313	39307											
CD207	50489	broad.mit.edu	37	chr2	71058202	71058202	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacggttctgatgggacataGggtcgcttacaaatgaaaag	12	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71058202	C	C	71058202	2	2	24	1	0	0	0	0	0	0	0	1	3013	987	35	4		4	CD207	2	71058202	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1492681	71058202	172141171	314	39308											
MCEE	84693	broad.mit.edu	37	chr2	71351404	71351404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcaattggactgtcacGtcccaatggatgaagcagtt	10	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71351404	T	T	71351404	3	4	24	1	0	0	0	0	1	0	0	0	9470	1145	40	3	228	3	MCEE	2	71351404	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	293202	71351404	171847969	315	39309											
DYSF	8291	broad.mit.edu	37	chr2	71788954	71788954	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctgtaccagctgcgcacCcatcacctgagccaaatcac	6	17	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71788954	A	A	71788954	2	1	24	1	0	0	0	0	0	0	0	1	4899	610	22	2		2	DYSF	2	71788954	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	437550	71788954	171410419	316	39310											
DYSF	8291	broad.mit.edu	37	chr2	71840560	71840560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggatgggcatcctccaGggaggcctgggtcacctttc	15	11	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71840560	T	T	71840560	1	4	24	0	1	0	0	0	0	0	0	0	4899	1015	35	2		2	DYSF	2	71840560	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	51606	71840560	171358813	317	39311											
SFXN5	94097	broad.mit.edu	37	chr2	73249655	73249655	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccaggagcttacctgaCattctaaatggcatgaagat	10	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73249655	T	T	73249655	3	4	24	1	0	0	0	0	1	0	0	0	14311	478	17	4	735	4	SFXN5	2	73249655	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1409095	73249655	169949718	318	39312											
REG3G	130120	broad.mit.edu	37	chr2	79253732	79253732	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagggaagatgaagagctgtCaggaatgtggtcttcctccc	13	8	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79253732	A	A	79253732	1	1	24	0	1	0	0	0	0	0	0	0	13321	841	29	3		3	REG3G	2	79253732	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	6004077	79253732	163945641	319	39313											
REG1B	5968	broad.mit.edu	37	chr2	79313967	79313967	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacccaggtctcagggtcttCattaaagtagtagcagtagg	11	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79313967	A	A	79313967	4	1	24	1	0	0	0	0	0	1	0	0	13319	835	29	3	362	3	REG1B	2	79313967	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	60235	79313967	163885406	320	39314											
REG1A	5967	broad.mit.edu	37	chr2	79349047	79349047	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttttctgacccgtcctcTtggaggactcagtatatccg	8	13	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79349047	A	A	79349047	1	1	24	0	1	0	0	0	0	0	0	0	13318	1624	56	5		5	REG1A	2	79349047	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	35080	79349047	163850326	321	39315											
CTNNA2	1496	broad.mit.edu	37	chr2	80136922	80136922	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcagcgagtacatgaataAtgtaagtcttgggatctcca	10	8	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80136922	T	T	80136922	3	4	24	1	0	0	0	0	1	0	0	0	4047	115	4	5		5	CTNNA2	2	80136922	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	787875	80136922	163062451	322	39316											
KDM3A	55818	broad.mit.edu	37	chr2	86705065	86705096	+	Frame_Shift_Del	DEL	ATCTTCAACCTGCACTGGGTGTGTCCTCGGTG	-	-													gtgatgtgtgcgacaccaccAtcttcaacctgcactgggtg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86705096	-	-	86705065	7	5	24	1	0	1	0	1	0	0	0	0	8196	217	8	0	2051	0	KDM3A	2	86705065	Frame_Shift_Del	DEL	ATCTTCAACCTGCACTGGGTGTGTCCTCGGTG	TCGA-05-4427-01A-21D-1855-08	6568143	86705065	156494308	323	39317											
RMND5A	64795	broad.mit.edu	37	chr2	87404328	87404328	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctctgtgccctttatccGcacttcccagctcacagcac	5	18	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87404328	A	A	87404328	1	1	24	0	1	0	0	0	0	0	0	0	13508	1102	38	4		4	RMND5A	2	87404328	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	699263	87404328	155795045	324	39318											
GPAT2	150763	broad.mit.edu	37	chr2	96688033	96688033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcagaacctgggccatGgaagataagccgtgagtgcg	15	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96688033	T	T	96688033	1	4	24	0	1	0	0	0	0	0	0	0	6654	1363	47	2		2	GPAT2	2	96688033	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	9283705	96688033	146511340	325	39319											
CIAO1	9391	broad.mit.edu	37	chr2	96936949	96936949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcagcccaccttctccCtgacagcccacttgcatcag	6	19	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96936949	A	A	96936949	3	1	24	1	0	0	0	0	1	0	0	0	3449	680	24	2	906	2	CIAO1	2	96936949	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	248916	96936949	146262424	326	39320											
TMEM131	23505	broad.mit.edu	37	chr2	98377313	98377313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggggttgccgttcttgcCcgggagcgaggctgcctttg	17	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98377313	A	A	98377313	3	1	24	1	0	0	0	0	1	0	0	0	16167	623	22	2	717	2	TMEM131	2	98377313	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1440364	98377313	144822060	327	39321											
EIF5B	9669	broad.mit.edu	37	chr2	99999328	99999328	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttggagccccagacaattGagtctatcaaccttctcaaa	7	11	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99999328	A	A	99999328	3	1	24	1	0	0	0	0	1	0	0	0	5086	1291	45	4	2269	4	EIF5B	2	99999328	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1622015	99999328	143200045	328	39322											
REV1	51455	broad.mit.edu	37	chr2	100038179	100038180	+	Intron	INS	-	A	A													atctggtagacccaatgttgINScaaaatagtcttcttatcct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100038180	A	A	100038179	6	5	24	0	1	1	1	0	0	0	0	0	13347	1334	46	0		0	REV1	2	100038179	Intron	INS	-	TCGA-05-4427-01A-21D-1855-08	38851	100038179	143161194	329	39323											
AFF3	3899	broad.mit.edu	37	chr2	100628032	100628032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtttaagatgtcttcacCcctgcaagaaatataaacac	6	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100628032	A	A	100628032	1	1	24	0	1	0	0	0	0	0	0	0	358	637	22	2		2	AFF3	2	100628032	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	589853	100628032	142571341	330	39324											
IL1RL1	9173	broad.mit.edu	37	chr2	102968097	102968097	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagtttgcctacgagcagGaggttgccctgcactgtgcc	14	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102968097	T	T	102968097	4	4	24	1	0	0	0	0	0	1	0	0	7733	1175	41	3	1442	3	IL1RL1	2	102968097	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2340065	102968097	140231276	331	39325											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105883796	105883796	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttcatgtccagcaggctCagaaagaactcggagttccc	9	13	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105883796	A	A	105883796	1	1	24	0	1	0	0	0	0	0	0	0	15947	841	29	3		3	TGFBRAP1	2	105883796	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	2915699	105883796	137315577	332	39326											
UXS1	80146	broad.mit.edu	37	chr2	106710472	106710472	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtagtcttgtgtcctaaaAgtgaggagttcagctgtggc	14	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106710472	C	C	106710472	1	2	24	0	1	0	0	0	0	0	0	0	17236	87	3	5		5	UXS1	2	106710472	3'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	826676	106710472	136488901	333	39327											
RGPD4	285190	broad.mit.edu	37	chr2	108476182	108476182	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaactattttttagacctGgaaactcagcaaaattgaga	7	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108476182	A	A	108476182	3	1	24	1	0	0	0	0	1	0	0	0	13396	1349	47	4	1685	4	RGPD4	2	108476182	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1765710	108476182	134723191	334	39328											
SLC20A1	6574	broad.mit.edu	37	chr2	113416317	113416317	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcttgttttgagatgagTtttttgggggtggaggaaag	15	2	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113416317	C	C	113416317	1	2	24	0	1	0	0	0	0	0	0	0	14551	1740	60	5		5	SLC20A1	2	113416317	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	4940135	113416317	129783056	335	39329											
CKAP2L	150468	broad.mit.edu	37	chr2	113504007	113504007	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatactcactgttgccccaTttttaatggcctcttcatat	5	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113504007	C	C	113504007	3	2	24	1	0	0	0	0	1	0	0	0	3474	1493	52	5	505	5	CKAP2L	2	113504007	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	87690	113504007	129695366	336	39330											
IL1RN	3557	broad.mit.edu	37	chr2	113887117	113887117	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaaggctgggcacatggtGgctgtgcactacagctgagt	14	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113887117	C	C	113887117	1	2	24	0	1	0	0	0	0	0	0	0	7735	1363	47	4		4	IL1RN	2	113887117	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	383110	113887117	129312256	337	39331											
DPP10	57628	broad.mit.edu	37	chr2	116101469	116101469	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactttgtgcttcacgatccAgaggctcggtggatcaatgg	13	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116101469	G	G	116101469	2	3	24	1	0	0	0	0	0	0	0	1	4767	175	7	5		5	DPP10	2	116101469	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	2214352	116101469	127097904	338	39332											
DDX18	8886	broad.mit.edu	37	chr2	118583274	118583274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcattccacattcaaggtAaagatccctactatacagtg	6	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118583274	T	T	118583274	1	4	24	0	1	0	0	0	0	0	0	0	4378	377	13	5		5	DDX18	2	118583274	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2481805	118583274	124616099	339	39333											
GLI2	2736	broad.mit.edu	37	chr2	121708923	121708923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccttcaacgccccccaccCgtacgtgaacccccacatgg	6	22	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121708923	A	A	121708923	3	1	24	1	0	0	0	0	1	0	0	0	6502	652	23	1	369	1	GLI2	2	121708923	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3125649	121708923	121490450	340	39334											
CNTNAP5	129684	broad.mit.edu	37	chr2	125555951	125555951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgggctggagggacgGtgcatgccctccagaactct	14	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125555951	T	T	125555951	1	4	24	0	1	0	0	0	0	0	0	0	3682	1276	44	3		3	CNTNAP5	2	125555951	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3847028	125555951	117643422	341	39335											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671721	125671721	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatcatcggcatcatgacCcggttcctctaccagcacaa	7	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125671721	A	A	125671721	2	1	24	1	0	0	0	0	0	0	0	1	3682	610	22	2		2	CNTNAP5	2	125671721	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	115770	125671721	117527652	342	39336											
BIN1	274	broad.mit.edu	37	chr2	127821174	127821174	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctccttgtggaagttttcCtccaggcccgcgatgctctg	10	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127821174	T	T	127821174	2	4	24	1	0	0	0	0	0	0	0	1	1438	680	24	4		4	BIN1	2	127821174	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2149453	127821174	115378199	343	39337											
SAP130	79595	broad.mit.edu	37	chr2	128750982	128750982	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtgtccttcagaactgtCaaacaagctttgctcaaatt	6	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128750982	A	A	128750982	1	1	24	0	1	0	0	0	0	0	0	0	13942	841	29	3		3	SAP130	2	128750982	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	929808	128750982	114448391	344	39338											
POTEF	728378	broad.mit.edu	37	chr2	130832437	130832437	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtggcatgggggagggCattcccctcatagatgggca	17	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832437	T	T	130832437	3	4	24	1	0	0	0	0	1	0	0	0	12361	710	25	4	623	4	POTEF	2	130832437	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2081455	130832437	112366936	345	39339											
SMPD4	55627	broad.mit.edu	37	chr2	130924963	130924963	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaggcctcgcaaagtgctgGggattataggcacgagccac	13	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130924963	A	A	130924963	1	1	24	0	1	0	0	0	0	0	0	0	14921	1247	43	4		4	SMPD4	2	130924963	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	92526	130924963	112274410	346	39340											
SMPD4	55627	broad.mit.edu	37	chr2	130929999	130929999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttcggtgggcaggaaCcatgacaggtacctgtccac	12	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130929999	A	A	130929999	3	1	24	1	0	0	0	0	1	0	0	0	14921	508	18	3	1953	3	SMPD4	2	130929999	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5036	130929999	112269374	347	39341											
PTPN18	26469	broad.mit.edu	37	chr2	131116958	131116958	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaatctcagtcgtgaattcGgccttcaccagggcgtggat	12	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131116958	C	C	131116958	1	2	24	0	1	0	0	0	0	0	0	0	12890	1131	39	4		4	PTPN18	2	131116958	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	186959	131116958	112082415	348	39342											
GPR148	344561	broad.mit.edu	37	chr2	131487073	131487073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggtggctgggagctgGgccgcatggcctgtggcatt	19	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131487073	T	T	131487073	3	4	24	1	0	0	0	0	1	0	0	0	6718	1232	43	2	351	2	GPR148	2	131487073	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	370115	131487073	111712300	349	39343											
ARHGEF4	50649	broad.mit.edu	37	chr2	131688652	131688652	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacatgggccctcctctGcatctctgcagagactgtgc	12	13	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131688652	C	C	131688652	3	2	24	1	0	0	0	0	1	0	0	0	910	1319	46	4	124	4	ARHGEF4	2	131688652	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	201579	131688652	111510721	350	39344											
PLEKHB2	55041	broad.mit.edu	37	chr2	132109567	132109567	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatgccctccccaccagctCctggataatgacacctcact	6	17	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132109567	A	A	132109567	1	1	24	0	1	0	0	0	0	0	0	0	12160	870	30	3		3	PLEKHB2	2	132109567	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	420915	132109567	111089806	351	39345											
YSK4	80122	broad.mit.edu	37	chr2	135743912	135743912	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gataaatgggatctggtgatGtagctcttcaagttcttgca	11	6	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135743912	A	A	135743912	3	1	24	1	0	0	0	0	1	0	0	0	17622	1377	48	4	1472	4	YSK4	2	135743912	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3634345	135743912	107455461	352	39346											
LCT	3938	broad.mit.edu	37	chr2	136566002	136566002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttaaggggaactgaaCcctcacacacctttcaaagc	6	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136566002	A	A	136566002	1	1	24	0	1	0	0	0	0	0	0	0	8765	522	18	3		3	LCT	2	136566002	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	822090	136566002	106633371	353	39347											
LCT	3938	broad.mit.edu	37	chr2	136594095	136594095	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccatcaggtcaatgtgtaCtcaccctgaaaagcatagct	7	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136594095	T	T	136594095	1	4	24	0	1	0	0	0	0	0	0	0	8765	580	20	4		4	LCT	2	136594095	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	28093	136594095	106605278	354	39348											
MCM6	4175	broad.mit.edu	37	chr2	136626369	136626369	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgaactgggtgagtccGcaccacctgcccactgatgc	13	13	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136626369	A	A	136626369	3	1	24	1	0	0	0	0	1	0	0	0	9484	1086	38	4	2094	4	MCM6	2	136626369	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	32274	136626369	106573004	355	39349											
LRP1B	53353	broad.mit.edu	37	chr2	141113847	141113847	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgtgatctcacaatttaGaagtcttgggaatcttcata	7	9	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141113847	A	A	141113847	1	1	24	0	1	0	0	0	0	0	0	0	9042	957	33	4		4	LRP1B	2	141113847	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4487478	141113847	102085526	356	39350											
LRP1B	53353	broad.mit.edu	37	chr2	141115763	141115763	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtaatagctccaaaatTttactaactactatgaaaaa	4	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141115763	G	G	141115763	1	3	24	0	1	0	0	0	0	0	0	0	9042	1856	64	5		5	LRP1B	2	141115763	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1916	141115763	102083610	357	39351											
LRP1B	53353	broad.mit.edu	37	chr2	141122277	141122277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtctccacagtcgtcctctCcatcacacacccagaaatgt	5	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141122277	A	A	141122277	3	1	24	1	0	0	0	0	1	0	0	0	9042	855	30	3	2795	3	LRP1B	2	141122277	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	6514	141122277	102077096	358	39352											
LRP1B	53353	broad.mit.edu	37	chr2	141130580	141130580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcaatccttttacctgGctcacagcttttctcatctt	3	13	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141130580	T	T	141130580	3	4	24	1	0	0	0	0	1	0	0	0	9042	1203	42	3	3126	3	LRP1B	2	141130580	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	8303	141130580	102068793	359	39353											
LRP1B	53353	broad.mit.edu	37	chr2	141201790	141201791	+	Intron	DEL	TC	-	-													ctaattatttgaccataattTcttttcaatttatctacatc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141201791	-	-	141201790	6	5	24	0	1	1	0	1	0	0	0	0	9042	1798	62	0		0	LRP1B	2	141201790	Intron	DEL	TC	TCGA-05-4427-01A-21D-1855-08	71210	141201790	101997583	360	39354											
LRP1B	53353	broad.mit.edu	37	chr2	141533625	141533625	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatataaaaaagagcacatTacgtattcaagacctggcac	6	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141533625	A	A	141533625	1	1	24	0	1	0	0	0	0	0	0	0	9042	1769	61	5		5	LRP1B	2	141533625	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	331835	141533625	101665748	361	39355											
LRP1B	53353	broad.mit.edu	37	chr2	141571200	141571200	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccaatcaatacaaagcaaCcaagctatagaataatttca	3	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141571200	G	G	141571200	1	3	24	0	1	0	0	0	0	0	0	0	9042	522	18	4		4	LRP1B	2	141571200	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	37575	141571200	101628173	362	39356											
KYNU	8942	broad.mit.edu	37	chr2	143799613	143799613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctttattttttccccaCagtgtgacaagcggaatcca	9	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143799613	A	A	143799613	1	1	24	0	1	0	0	0	0	0	0	0	8659	493	17	3		3	KYNU	2	143799613	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2228413	143799613	99399760	363	39357											
GTDC1	79712	broad.mit.edu	37	chr2	144966223	144966223	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatataaagcagatgtccgGgctctccaatgccatttctt	7	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144966223	T	T	144966223	2	4	24	1	0	0	0	0	0	0	0	1	6916	1219	43	2		2	GTDC1	2	144966223	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1166610	144966223	98233150	364	39358											
GTDC1	79712	broad.mit.edu	37	chr2	144966234	144966234	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgtccgggctctccaatGccatttctttgcaggaaggg	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144966234	C	C	144966234	3	2	24	1	0	0	0	0	1	0	0	0	6916	1319	46	4	1297	4	GTDC1	2	144966234	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	11	144966234	98233139	365	39359											
LYPD6B	130576	broad.mit.edu	37	chr2	150071023	150071023	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgccccttccctcttctatTattcactgtcatttcctctc	2	16	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150071023	A	A	150071023	1	1	24	0	1	0	0	0	0	0	0	0	9203	1769	61	5		5	LYPD6B	2	150071023	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	5104789	150071023	93128350	366	39360											
RND3	390	broad.mit.edu	37	chr2	151326542	151326543	+	Missense_Mutation	DNP	CC	AA	AA													cgctttgtcctttcgtaagtCcgtagcaactgccgagagtt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	151326543	AA	AA	151326542	3	1	24	1	0	0	0	0	1	0	0	0	13532	855	30	3	44	3	RND3	2	151326542	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	1255519	151326542	91872831	367	39361											
NEB	4703	broad.mit.edu	37	chr2	152432389	152432389	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactatgcaacttttaaatTttcttttggatttgatccaa	4	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152432389	G	G	152432389	1	3	24	0	1	0	0	0	0	0	0	0	10397	1856	64	5		5	NEB	2	152432389	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1105847	152432389	90766984	368	39362											
FMNL2	114793	broad.mit.edu	37	chr2	153492934	153492934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgggatgttctttctctGctttagtctcccttgagaat	8	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153492934	T	T	153492934	1	4	24	0	1	0	0	0	0	0	0	0	6010	1334	46	3		3	FMNL2	2	153492934	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1060545	153492934	89706439	369	39363											
GALNT13	114805	broad.mit.edu	37	chr2	154996817	154996817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcattatctgtgtgtttGtatgtatgtctgtatctctg	9	5	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154996817	T	T	154996817	1	4	24	0	1	0	0	0	0	0	0	0	6273	1392	48	3		3	GALNT13	2	154996817	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1503883	154996817	88202556	370	39364											
GPD2	2820	broad.mit.edu	37	chr2	157369881	157369881	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactactgggtaggaatcaaGctgtatgatttggttgcagg	13	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157369881	C	C	157369881	3	2	24	1	0	0	0	0	1	0	0	0	6671	962	34	4	552	4	GPD2	2	157369881	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2373064	157369881	85829492	371	39365											
MARCH7	64844	broad.mit.edu	37	chr2	160623873	160623873	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttcatataagacagatggAtgatctgtgaacataagtgt	9	5	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160623873	T	T	160623873	1	4	24	0	1	0	0	0	0	0	0	0	9398	348	12	5		5	MARCH7	2	160623873	3'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	3253992	160623873	82575500	372	39366											
TBR1	10716	broad.mit.edu	37	chr2	162280682	162280682	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctggcccagcgggactgcGagaagaactgcgccaaggac	15	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162280682	T	T	162280682	4	4	24	1	0	0	0	0	0	1	0	0	15769	1059	37	3	2015	3	TBR1	2	162280682	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1656809	162280682	80918691	373	39367											
SLC4A10	57282	broad.mit.edu	37	chr2	162815078	162815078	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattcaggtaaattacttaCagtactacaggcacatctgt	7	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162815078	T	T	162815078	1	4	24	0	1	0	0	0	0	0	0	0	14765	493	17	4		4	SLC4A10	2	162815078	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	534396	162815078	80384295	374	39368											
SCN3A	6328	broad.mit.edu	37	chr2	166026944	166026944	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacattaaaaggatatgaatGtaccaaaatcttgatagcaa	6	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166026944	A	A	166026944	3	1	24	1	0	0	0	0	1	0	0	0	14031	1377	48	4	5819	4	SCN3A	2	166026944	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3211866	166026944	77172429	375	39369											
TTC21B	79809	broad.mit.edu	37	chr2	166771854	166771854	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttcaatatctccttgggcTagagcaaggtctgcattagc	10	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166771854	C	C	166771854	2	2	24	1	0	0	0	0	0	0	0	1	16814	1509	53	5		5	TTC21B	2	166771854	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	744910	166771854	76427519	376	39370											
SCN9A	6335	broad.mit.edu	37	chr2	167060506	167060506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaaaatcaaaaatattcCatcctacagtgaagtagtag	5	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167060506	A	A	167060506	3	1	24	1	0	0	0	0	1	0	0	0	14038	595	21	2	1241	2	SCN9A	2	167060506	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	288652	167060506	76138867	377	39371											
XIRP2	129446	broad.mit.edu	37	chr2	168067243	168067243	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcatgctctgtttgctttcAgcgactgctggccctaataa	9	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168067243	T	T	168067243	5	4	24	1	0	0	0	0	0	0	1	0	17557	202	7	5	571	5	XIRP2	2	168067243	Splice_Site	SNP	A	TCGA-05-4427-01A-21D-1855-08	1006737	168067243	75132130	378	39372											
XIRP2	129446	broad.mit.edu	37	chr2	168096499	168096499	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actatttagaaaggcagtacTttcaaacagtttccaggact	7	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168096499	A	A	168096499	1	1	24	0	1	0	0	0	0	0	0	0	17557	1624	56	5		5	XIRP2	2	168096499	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	29256	168096499	75102874	379	39373											
XIRP2	129446	broad.mit.edu	37	chr2	168101659	168101659	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccaattgataagataaaaGaaagccaagaaggtgatgaa	9	4	0	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168101659	T	T	168101659	4	4	24	1	0	0	0	0	0	1	0	0	17557	943	33	3	3787	3	XIRP2	2	168101659	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5160	168101659	75097714	380	39374											
XIRP2	129446	broad.mit.edu	37	chr2	168101938	168101938	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaagaggtaattcatggaGatgtgcgaggaacaaggtgg	16	3	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168101938	T	T	168101938	3	4	24	1	0	0	0	0	1	0	0	0	17557	942	33	3	4066	3	XIRP2	2	168101938	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	279	168101938	75097435	381	39375											
XIRP2	129446	broad.mit.edu	37	chr2	168102125	168102125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcacataatattatgcCcagtattgaccatatacaag	5	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168102125	A	A	168102125	3	1	24	1	0	0	0	0	1	0	0	0	17557	623	22	2	4253	2	XIRP2	2	168102125	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	187	168102125	75097248	382	39376											
XIRP2	129446	broad.mit.edu	37	chr2	168102604	168102604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcaaaaagttatccaggctCctggaatcatcattgaagct	7	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168102604	A	A	168102604	3	1	24	1	0	0	0	0	1	0	0	0	17557	855	30	3	4732	3	XIRP2	2	168102604	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	479	168102604	75096769	383	39377											
ABCB11	8647	broad.mit.edu	37	chr2	169828369	169828369	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggtacctgtggcaggtcCatgatgaagttgtaggcatt	15	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169828369	T	T	169828369	3	4	24	1	0	0	0	0	1	0	0	0	42	594	21	4	2399	4	ABCB11	2	169828369	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1725765	169828369	73371004	384	39378											
LRP2	4036	broad.mit.edu	37	chr2	169995231	169995231	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaagctggaaagaagtaaCcaaaacagtgtcttgttatt	8	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169995231	T	T	169995231	1	4	24	0	1	0	0	0	0	0	0	0	9043	522	18	4		4	LRP2	2	169995231	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	166862	169995231	73204142	385	39379											
LRP2	4036	broad.mit.edu	37	chr2	170090060	170090060	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtcagtccagtacacagaGtcttcaaagagagttagggc	12	9	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170090060	A	A	170090060	2	1	24	1	0	0	0	0	0	0	0	1	9043	1020	36	4		4	LRP2	2	170090060	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	94829	170090060	73109313	386	39380											
LRP2	4036	broad.mit.edu	37	chr2	170101325	170101325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggaagcaggtgcgtggGtggggcagttgtgctcatca	19	7	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170101325	T	T	170101325	3	4	24	1	0	0	0	0	1	0	0	0	9043	1261	44	3	10891	3	LRP2	2	170101325	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	11265	170101325	73098048	387	39381											
C2orf77	129881	broad.mit.edu	37	chr2	170518666	170518666	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttacttgatcattacatAatgtatgcatgggtcaaaat	6	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170518666	T	T	170518666	1	4	24	0	1	0	0	0	0	0	0	0	2216	377	13	5		5	C2orf77	2	170518666	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	417341	170518666	72680707	388	39382											
RAPGEF4	11069	broad.mit.edu	37	chr2	173850327	173850327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttcttggccccgggtctgGcttggtgacttggcagggtg	16	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173850327	A	A	173850327	1	1	24	0	1	0	0	0	0	0	0	0	13154	1218	42	4		4	RAPGEF4	2	173850327	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3331661	173850327	69349046	389	39383											
CHRNA1	1134	broad.mit.edu	37	chr2	175622431	175622431	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagacatacagctaattaAaaagccaaaaacactttcta	3	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175622431	T	T	175622431	1	4	24	0	1	0	0	0	0	0	0	0	3412	29	1	5		5	CHRNA1	2	175622431	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1772104	175622431	67576942	390	39384											
AGPS	8540	broad.mit.edu	37	chr2	178305792	178305792	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgccttttgaattttaaTatgtaaatttgttctattta	5	3	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178305792	G	G	178305792	1	3	24	0	1	0	0	0	0	0	0	0	394	1421	49	5		5	AGPS	2	178305792	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2683361	178305792	64893581	391	39385											
TTN	7273	broad.mit.edu	37	chr2	179414788	179414788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgtatacaccacgatGgtcccgagtagcatctctaa	8	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179414788	T	T	179414788	3	4	24	1	0	0	0	0	1	0	0	0	16861	1348	47	2	16306	2	TTN	2	179414788	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1108996	179414788	63784585	392	39386											
TTN	7273	broad.mit.edu	37	chr2	179429534	179429534	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcttttctttctgttcaaGatggtagccaataattttgg	8	6	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179429534	T	T	179429534	3	4	24	1	0	0	0	0	1	0	0	0	16861	942	33	3	26802	3	TTN	2	179429534	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	14746	179429534	63769839	393	39387											
TTN	7273	broad.mit.edu	37	chr2	179457383	179457383	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaagaatcaactcaggGggttctagaataaagagaac	10	7	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179457383	T	T	179457383	2	4	24	1	0	0	0	0	0	0	0	1	16861	1219	43	2		2	TTN	2	179457383	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	27849	179457383	63741990	394	39388											
TTN	7273	broad.mit.edu	37	chr2	179543389	179543389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctctaaagagttgcatcCcaaagagtacagaattaaac	6	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179543389	A	A	179543389	1	1	24	0	1	0	0	0	0	0	0	0	16861	638	22	2		2	TTN	2	179543389	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	86006	179543389	63655984	395	39389											
TTN	7273	broad.mit.edu	37	chr2	179554016	179554016	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagatggagaaacaataCcttttggtggtggtggaact	15	4	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179554016	A	A	179554016	5	1	24	1	0	0	0	0	0	0	1	0	16861	521	18	3	72473	3	TTN	2	179554016	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	10627	179554016	63645357	396	39390											
TTN	7273	broad.mit.edu	37	chr2	179554424	179554424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacagacacttttgttcaGttctcaccacaaaacattca	5	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179554424	T	T	179554424	1	4	24	0	1	0	0	0	0	0	0	0	16861	1044	36	3		3	TTN	2	179554424	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	408	179554424	63644949	397	39391											
TTN	7273	broad.mit.edu	37	chr2	179580223	179580223	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggggagagcgctgaccttTaacttttaaggatgtgctgc	14	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179580223	G	G	179580223	3	3	24	1	0	0	0	0	1	0	0	0	16861	1763	61	5	78707	5	TTN	2	179580223	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	25799	179580223	63619150	398	39392											
TTN	7273	broad.mit.edu	37	chr2	179597060	179597060	+	Frame_Shift_Del	DEL	C	-	-													tgatggctctaacttttcaaCaaatgtggcaggttctgtgg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179597060	-	-	179597060	7	5	24	1	0	1	0	1	0	0	0	0	16861	478	17	0	88117	0	TTN	2	179597060	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	16837	179597060	63602313	399	39393											
TTN	7273	broad.mit.edu	37	chr2	179605493	179605493	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagaaggttttctgggacTgtacaatctgcagctgtagg	14	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179605493	A	A	179605493	3	1	24	1	0	0	0	0	1	0	0	0	16861	1580	55	5	92322	5	TTN	2	179605493	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	8433	179605493	63593880	400	39394											
TTN	7273	broad.mit.edu	37	chr2	179658342	179658342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttcaagaccagcctcgcCaacatggtgaaatcctctac	7	13	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179658342	A	A	179658342	1	1	24	0	1	0	0	0	0	0	0	0	16861	609	21	2		2	TTN	2	179658342	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	52849	179658342	63541031	401	39395											
FRZB	2487	broad.mit.edu	37	chr2	183707257	183707257	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtagctctaataggctTacatttacagcgttctgaaa	8	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183707257	A	A	183707257	4	1	24	1	0	0	0	0	0	1	0	0	6125	1763	61	5	452	5	FRZB	2	183707257	Nonsense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	4048915	183707257	59492116	402	39396											
ZNF804A	91752	broad.mit.edu	37	chr2	185802585	185802585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagaggcagattccaccCcggatttgaaactttagaac	8	9	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185802585	A	A	185802585	3	1	24	1	0	0	0	0	1	0	0	0	18299	623	22	2	2476	2	ZNF804A	2	185802585	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2095328	185802585	57396788	403	39397											
ITGAV	3685	broad.mit.edu	37	chr2	187533638	187533638	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatatggagatcaaccctttGagaattaaggtaatatgctt	9	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187533638	A	A	187533638	2	1	24	1	0	0	0	0	0	0	0	1	7958	1281	45	4		4	ITGAV	2	187533638	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1731053	187533638	55665735	404	39398											
ZSWIM2	151112	broad.mit.edu	37	chr2	187693111	187693111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcccaaatgacacagtgGgtaaatcttgaagatacctg	8	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187693111	T	T	187693111	3	4	24	1	0	0	0	0	1	0	0	0	18370	1232	43	2	403	2	ZSWIM2	2	187693111	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	159473	187693111	55506262	405	39399											
ZSWIM2	151112	broad.mit.edu	37	chr2	187694448	187694448	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaactaaaatgatgtgacTtttaccttgtgagtacatgg	8	5	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187694448	C	C	187694448	1	2	24	0	1	0	0	0	0	0	0	0	18370	1624	56	5		5	ZSWIM2	2	187694448	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1337	187694448	55504925	406	39400											
ZSWIM2	151112	broad.mit.edu	37	chr2	187703818	187703818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttcgtcatttgttcctGgttggggagtttgaactcga	11	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187703818	T	T	187703818	3	4	24	1	0	0	0	0	1	0	0	0	18370	1348	47	2	1563	2	ZSWIM2	2	187703818	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	9370	187703818	55495555	407	39401											
CALCRL	10203	broad.mit.edu	37	chr2	188247864	188247864	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagttttcttttaaaaataTgtcaaatgcatttacaacta	4	5	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188247864	A	A	188247864	1	1	24	0	1	0	0	0	0	0	0	0	2606	1479	51	5		5	CALCRL	2	188247864	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	544046	188247864	54951509	408	39402											
COL3A1	1281	broad.mit.edu	37	chr2	189874906	189874906	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttttgtgactattcaggaGaatactgggttgaccctaac	9	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189874906	A	A	189874906	3	1	24	1	0	0	0	0	1	0	0	0	3720	943	33	4	4020	4	COL3A1	2	189874906	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1627042	189874906	53324467	409	39403											
SLC40A1	30061	broad.mit.edu	37	chr2	190445202	190445202	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgacactaggcgacccCgctggctcttctgcggctgc	12	15	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190445202	A	A	190445202	1	1	24	0	1	0	0	0	0	0	0	0	14742	667	23	1		1	SLC40A1	2	190445202	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	570296	190445202	52754171	410	39404											
ANKAR	150709	broad.mit.edu	37	chr2	190585554	190585554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttataatgaccagataTattaagtgaagcaaacatgg	7	4	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190585554	C	C	190585554	1	2	24	0	1	0	0	0	0	0	0	0	623	1421	49	5		5	ANKAR	2	190585554	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	140352	190585554	52613819	411	39405											
INPP1	3628	broad.mit.edu	37	chr2	191224995	191224995	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagacgctggctgatgtacTggtacaggaagttataaaac	11	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191224995	A	A	191224995	3	1	24	1	0	0	0	0	1	0	0	0	7821	1580	55	5	169	5	INPP1	2	191224995	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	639441	191224995	51974378	412	39406											
MFSD6	54842	broad.mit.edu	37	chr2	191354474	191354474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggaattactctatagAgtgctgtttgtttttatagg	9	4	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191354474	G	G	191354474	1	3	24	0	1	0	0	0	0	0	0	0	9628	319	11	5		5	MFSD6	2	191354474	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	129479	191354474	51844899	413	39407											
MYO1B	4430	broad.mit.edu	37	chr2	192278936	192278936	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaaccttgaagactgataaGaagtacctattagttgggat	9	6	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192278936	A	A	192278936	1	1	24	0	1	0	0	0	0	0	0	0	10163	957	33	4		4	MYO1B	2	192278936	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	924462	192278936	50920437	414	39408											
SDPR	8436	broad.mit.edu	37	chr2	192701131	192701131	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaatcttctctctcctctCtacagatacgatctttgtcc	3	14	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192701131	T	T	192701131	3	4	24	1	0	0	0	0	1	0	0	0	14083	922	32	4	485	4	SDPR	2	192701131	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	422195	192701131	50498242	415	39409											
HECW2	57520	broad.mit.edu	37	chr2	197187323	197187323	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatttctaagacatcagtaaGaagtgcaaaaaaggaatatt	7	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197187323	A	A	197187323	3	1	24	1	0	0	0	0	1	0	0	0	7110	942	33	4	4047	4	HECW2	2	197187323	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4486192	197187323	46012050	416	39410											
PLCL1	5334	broad.mit.edu	37	chr2	198953565	198953565	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtcagaagtgtgattccaTgttttcttcctcacagaatg	9	8	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198953565	C	C	198953565	1	2	24	0	1	0	0	0	0	0	0	0	12134	1479	51	5		5	PLCL1	2	198953565	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1766242	198953565	44245808	417	39411											
PARD3B	117583	broad.mit.edu	37	chr2	206023603	206023603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttggggatttttatcaaatCcatcattcatggaggcgctg	10	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206023603	A	A	206023603	3	1	24	1	0	0	0	0	1	0	0	0	11538	855	30	3	1634	3	PARD3B	2	206023603	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7070038	206023603	37175770	418	39412											
ZDBF2	57683	broad.mit.edu	37	chr2	207170027	207170027	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaacataaagaatcaaatAggaaatctttacgcatgaat	6	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207170027	G	G	207170027	3	3	24	1	0	0	0	0	1	0	0	0	17725	411	15	5	785	5	ZDBF2	2	207170027	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1146424	207170027	36029346	419	39413											
ADAM23	8745	broad.mit.edu	37	chr2	207436385	207436385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaatatgcatgccacgtGtggagagaatatgaatgacc	12	6	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207436385	T	T	207436385	1	4	24	0	1	0	0	0	0	0	0	0	245	1392	48	3		3	ADAM23	2	207436385	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	266358	207436385	35762988	420	39414											
ADAM23	8745	broad.mit.edu	37	chr2	207451970	207451970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttatatatatccaccatgCttgcattatatatagtatgt	5	6	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207451970	A	A	207451970	1	1	24	0	1	0	0	0	0	0	0	0	245	812	28	3		3	ADAM23	2	207451970	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	15585	207451970	35747403	421	39415											
ADAM23	8745	broad.mit.edu	37	chr2	207457273	207457273	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatttgaatcaatgtggaccGaatcgttttgattttttgag	9	4	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207457273	T	T	207457273	1	4	24	0	1	0	0	0	0	0	0	0	245	1073	37	3		3	ADAM23	2	207457273	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5303	207457273	35742100	422	39416											
LOC200726	200726	broad.mit.edu	37	chr2	207509200	207509200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattttatgatctacctgaaGtcatctgagaacttgaagca	8	7	3	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207509200	T	T	207509200	3	4	24	1	0	0	0	0	1	0	0	0	8951	1020	36	3	242	3	LOC200726	2	207509200	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	51927	207509200	35690173	423	39417											
CPO	130749	broad.mit.edu	37	chr2	207826953	207826953	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctgctattctgagttcCttctagaatggttatccttc	6	10	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207826953	T	T	207826953	1	4	24	0	1	0	0	0	0	0	0	0	3852	696	24	4		4	CPO	2	207826953	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	317753	207826953	35372420	424	39418											
MAP2	4133	broad.mit.edu	37	chr2	210517893	210517893	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaataacaaggcattgaaGaatggcagatgaacggaaag	12	4	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210517893	T	T	210517893	1	4	24	0	1	0	0	0	0	0	0	0	9327	957	33	3		3	MAP2	2	210517893	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	2690940	210517893	32681480	425	39419											
MAP2	4133	broad.mit.edu	37	chr2	210574613	210574613	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgtctgactctggtttgGttttggtcttgcttgttaat	10	5	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210574613	A	A	210574613	1	1	24	0	1	0	0	0	0	0	0	0	9327	1276	44	4		4	MAP2	2	210574613	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	56720	210574613	32624760	426	39420											
CPS1	1373	broad.mit.edu	37	chr2	211447452	211447452	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgaggggttttcctttaTattttgtagttttatttgat	10	2	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211447452	A	A	211447452	1	1	24	0	1	0	0	0	0	0	0	0	3855	1421	49	5		5	CPS1	2	211447452	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	872839	211447452	31751921	427	39421											
ERBB4	2066	broad.mit.edu	37	chr2	212589838	212589838	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggtcctgagcagcctccaGcacattctcgatggcagcag	11	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212589838	A	A	212589838	3	1	24	1	0	0	0	0	1	0	0	0	5251	971	34	4	3314	4	ERBB4	2	212589838	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1142386	212589838	30609535	428	39422											
ERBB4	2066	broad.mit.edu	37	chr2	212812268	212812268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttgtcccacgaataatgCgtaaattctccagaggcagg	10	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212812268	A	A	212812268	3	1	24	1	0	0	0	0	1	0	0	0	5251	768	27	3	3722	3	ERBB4	2	212812268	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	222430	212812268	30387105	429	39423											
SPAG16	79582	broad.mit.edu	37	chr2	214972995	214972995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcccagggtaagttcaGttctcccagtaaactgtttt	8	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214972995	T	T	214972995	1	4	24	0	1	0	0	0	0	0	0	0	15094	1044	36	3		3	SPAG16	2	214972995	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2160727	214972995	28226378	430	39424											
FN1	2335	broad.mit.edu	37	chr2	216284006	216284007	+	Missense_Mutation	DNP	CC	AA	AA													ggcaatgccactccccaatgCcacggccatagcagtagcac							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	216284007	AA	AA	216284006	3	1	24	1	0	0	0	0	1	0	0	0	6020	739	26	3	5828	3	FN1	2	216284006	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	1311011	216284006	26915367	431	39425											
PECR	55825	broad.mit.edu	37	chr2	216916162	216916162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaatttcaatatagatcGtttacctacaggggcaacac	6	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216916162	T	T	216916162	1	4	24	0	1	0	0	0	0	0	0	0	11811	1160	40	3		3	PECR	2	216916162	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	632156	216916162	26283211	432	39426											
VIL1	7429	broad.mit.edu	37	chr2	219292998	219292998	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggggatgttttcctcctgGaccttgggaagcttatcatc	12	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219292998	A	A	219292998	3	1	24	1	0	0	0	0	1	0	0	0	17291	1174	41	4	523	4	VIL1	2	219292998	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2376836	219292998	23906375	433	39427											
PLCD4	84812	broad.mit.edu	37	chr2	219487612	219487612	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagacagtggtaagagaaaTcaggtggagaggcaccagac	14	7	2	4	rs74809044	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219487612	G	G	219487612	1	3	24	0	1	0	0	0	0	0	0	0	12128	1450	50	5		5	PLCD4	2	219487612	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	194614	219487612	23711761	434	39428											
NHEJ1	79840	broad.mit.edu	37	chr2	220012365	220012365	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccccacccaactcctccaaGaatgtcctcttacctcgaat	4	18	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220012365	C	C	220012365	1	2	24	0	1	0	0	0	0	0	0	0	10497	957	33	4		4	NHEJ1	2	220012365	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	524753	220012365	23187008	435	39429											
PTPRN	5798	broad.mit.edu	37	chr2	220161695	220161695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccaggtgggccagcaGggttcactcacagggcagga	17	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220161695	T	T	220161695	1	4	24	0	1	0	0	0	0	0	0	0	12915	1015	35	2		2	PTPRN	2	220161695	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	149330	220161695	23037678	436	39430											
PTPRN	5798	broad.mit.edu	37	chr2	220166876	220166876	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacctggctgcacagctgggGaagcaggcttctctccacga	12	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220166876	C	C	220166876	3	2	24	1	0	0	0	0	1	0	0	0	12915	1174	41	4	2034	4	PTPRN	2	220166876	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5181	220166876	23032497	437	39431											
SPEG	10290	broad.mit.edu	37	chr2	220356565	220356565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgccacggacatctgGggagcgggtgtgctcactta	15	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220356565	T	T	220356565	3	4	24	1	0	0	0	0	1	0	0	0	15154	1241	43	2	9601	2	SPEG	2	220356565	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	189689	220356565	22842808	438	39432											
EPHA4	2043	broad.mit.edu	37	chr2	222428959	222428960	+	Frame_Shift_Ins	INS	-	A	A													gaagactattgcagtccctcINSaaggtgaatttaatctcaat							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222428960	A	A	222428959	7	5	24	1	0	1	1	0	0	0	0	0	5211	825	29	0	2705	0	EPHA4	2	222428959	Frame_Shift_Ins	INS	-	TCGA-05-4427-01A-21D-1855-08	2072394	222428959	20770414	439	39433											
MOGAT1	116255	broad.mit.edu	37	chr2	223559869	223559869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttaaacaaactgacaacCctgaaggatcatggattaga	8	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223559869	A	A	223559869	3	1	24	1	0	0	0	0	1	0	0	0	9788	623	22	2	733	2	MOGAT1	2	223559869	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1130910	223559869	19639504	440	39434											
KCNE4	23704	broad.mit.edu	37	chr2	223917758	223917758	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagaagtccagcctcctGctgctgtacaaagacgagga	12	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223917758	T	T	223917758	2	4	24	1	0	0	0	0	0	0	0	1	8095	1306	46	3		3	KCNE4	2	223917758	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	357889	223917758	19281615	441	39435											
MRPL44	65080	broad.mit.edu	37	chr2	224822086	224822086	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggggctgtctccgcccCagccttctcttcgcgttccg	11	19	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224822086	A	A	224822086	1	1	24	0	1	0	0	0	0	0	0	0	9902	609	21	2		2	MRPL44	2	224822086	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	904328	224822086	18377287	442	39436											
DOCK10	55619	broad.mit.edu	37	chr2	225662741	225662741	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagaaaattttcattctAtcaaaaaatatttattgtga	4	3	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225662741	G	G	225662741	1	3	24	0	1	0	0	0	0	0	0	0	4725	464	16	5		5	DOCK10	2	225662741	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	840655	225662741	17536632	443	39437											
ALPI	248	broad.mit.edu	37	chr2	233321859	233321859	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacctctgtcaccctcaGgaaagtcagtaggagtggtg	12	11	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233321859	T	T	233321859	5	4	24	1	0	0	0	0	0	0	1	0	543	1014	35	2	493	2	ALPI	2	233321859	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	7659118	233321859	9877514	444	39438											
UGT1A8	54576	broad.mit.edu	37	chr2	234526371	234526371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcatggctcgcacagggtgGaccagccccattcccctatg	10	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234526371	T	T	234526371	3	4	24	1	0	0	0	0	1	0	0	0	17077	1183	41	3	20	3	UGT1A8	2	234526371	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1204512	234526371	8673002	445	39439											
TRPM8	79054	broad.mit.edu	37	chr2	234855735	234855735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttttatattttacagattCcaactatggtggcaagatcc	6	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234855735	A	A	234855735	3	1	24	1	0	0	0	0	1	0	0	0	16717	855	30	3	904	3	TRPM8	2	234855735	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	329364	234855735	8343638	446	39440											
SPP2	6694	broad.mit.edu	37	chr2	234975910	234975910	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgaacaattttatgatcGgtcacttggtaagtgatttc	9	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234975910	A	A	234975910	3	1	24	1	0	0	0	0	1	0	0	0	15205	1116	39	4	564	4	SPP2	2	234975910	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	120175	234975910	8223463	447	39441											
LRRFIP1	9208	broad.mit.edu	37	chr2	238642500	238642500	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgccccgcaccccctcCcactgtgcatgcaccgcccc	7	24	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238642500	G	G	238642500	1	3	24	0	1	0	0	0	0	0	0	0	9114	638	22	4		4	LRRFIP1	2	238642500	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3666590	238642500	4556873	448	39442											
RBM44	375316	broad.mit.edu	37	chr2	238730095	238730095	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaactttgttttgttcCctatttagaacattgataaa	4	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238730095	T	T	238730095	1	4	24	0	1	0	0	0	0	0	0	0	13246	638	22	4		4	RBM44	2	238730095	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	87595	238730095	4469278	449	39443											
HDAC4	9759	broad.mit.edu	37	chr2	239974810	239974810	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgctacaggggcggctcctCttccatgggctcctcatctg	12	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239974810	A	A	239974810	4	1	24	1	0	0	0	0	0	1	0	0	7076	922	32	3	20	3	HDAC4	2	239974810	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1244715	239974810	3224563	450	39444											
NDUFA10	4705	broad.mit.edu	37	chr2	240946746	240946746	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttaccttttttgaatctTgagcttcccttgcagaatat	5	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240946746	C	C	240946746	3	2	24	1	0	0	0	0	1	0	0	0	10355	1812	63	5	292	5	NDUFA10	2	240946746	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	971936	240946746	2252627	451	39445											
NDUFA10	4705	broad.mit.edu	37	chr2	240954195	240954195	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctctggacctctggaacGggcacatcgatgtaaatcac	10	13	3	0	rs148656779		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240954195	A	A	240954195	2	1	24	1	0	0	0	0	0	0	0	1	10355	1103	39	4		4	NDUFA10	2	240954195	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	7449	240954195	2245178	452	39446											
NDUFA10	4705	broad.mit.edu	37	chr2	240961674	240961674	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcactctgctgcgttctgtCagtcttttgcttgctttatc	7	11	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240961674	A	A	240961674	2	1	24	1	0	0	0	0	0	0	0	1	10355	813	29	3		3	NDUFA10	2	240961674	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	7479	240961674	2237699	453	39447											
KIF1A	547	broad.mit.edu	37	chr2	241656803	241656803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacccgcatctgggcagacCtccttctggagagcttggac	12	13	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241656803	A	A	241656803	3	1	24	1	0	0	0	0	1	0	0	0	8353	681	24	2	25	2	KIF1A	2	241656803	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	695129	241656803	1542570	454	39448											
AGXT	189	broad.mit.edu	37	chr2	241814543	241814543	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaagaagatgtactcccGcaagacgaagcccttctcct	8	13	1	4	rs121908527		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241814543	T	T	241814543	3	4	24	1	0	0	0	0	1	0	0	0	404	1087	38	3	724	3	AGXT	2	241814543	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	157740	241814543	1384830	455	39449											
C2orf54	79919	broad.mit.edu	37	chr2	241830951	241830951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgaccaggagggtgcgcCtacctccagagctgggcgct	15	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241830951	A	A	241830951	1	1	24	0	1	0	0	0	0	0	0	0	2197	696	24	2		2	C2orf54	2	241830951	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	16408	241830951	1368422	456	39450											
HDLBP	3069	broad.mit.edu	37	chr2	242169568	242169568	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcccacagagactcacGtattcctcctccagattgag	8	14	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242169568	T	T	242169568	4	4	24	1	0	0	0	0	0	1	0	0	7092	1159	40	3	227	3	HDLBP	2	242169568	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	338617	242169568	1029805	457	39451											
FARP2	9855	broad.mit.edu	37	chr2	242407608	242407608	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctaacagaactggaaaaGgctaccaaacgctgtaagaa	9	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242407608	A	A	242407608	2	1	24	1	0	0	0	0	0	0	0	1	5734	991	35	4		4	FARP2	2	242407608	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	238040	242407608	791765	458	39452											
CNTN4	152330	broad.mit.edu	37	chr3	2908649	2908649	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtgagttttcaagtaAttttgttaattttgtttctg	9	2	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2908649	C	C	2908649	1	2	24	0	1	0	0	0	0	0	0	0	3675	116	4	5		5	CNTN4	3	2908649	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08		2908649	195113781	459	39453											
ITPR1	3708	broad.mit.edu	37	chr3	4685792	4685792	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccttatcagttttgtgcAaagctctattgctcctttcc	6	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4685792	G	G	4685792	1	3	24	0	1	0	0	0	0	0	0	0	7990	145	5	5		5	ITPR1	3	4685792	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1777143	4685792	193336638	460	39454											
GRM7	2917	broad.mit.edu	37	chr3	7188146	7188146	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtctttgcagatcccccAgattagttatgcatcaacgg	8	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7188146	T	T	7188146	3	4	24	1	0	0	0	0	1	0	0	0	6868	188	7	5	533	5	GRM7	3	7188146	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2502354	7188146	190834284	461	39455											
SRGAP3	9901	broad.mit.edu	37	chr3	9055012	9055012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatattcttcccctccagcCatgcatttttcatacacagg	4	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9055012	A	A	9055012	3	1	24	1	0	0	0	0	1	0	0	0	15265	594	21	2	1196	2	SRGAP3	3	9055012	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1866866	9055012	188967418	462	39456											
SRGAP3	9901	broad.mit.edu	37	chr3	9166584	9166584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacatttgaactgctccaCcagctgcgtgcggatctctg	10	13	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9166584	A	A	9166584	3	1	24	1	0	0	0	0	1	0	0	0	15265	507	18	3	3333	3	SRGAP3	3	9166584	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	111572	9166584	188855846	463	39457											
LHFPL4	375323	broad.mit.edu	37	chr3	9594110	9594110	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcgctggacgggatggtgCtgaagtcggtgaaggagccc	19	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9594110	G	G	9594110	3	3	24	1	0	0	0	0	1	0	0	0	8839	797	28	4	501	4	LHFPL4	3	9594110	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	427526	9594110	188428320	464	39458											
MTMR14	64419	broad.mit.edu	37	chr3	9710414	9710414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcccagcacatttgcagGtcggccacactggctggatg	11	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9710414	T	T	9710414	3	4	24	1	0	0	0	0	1	0	0	0	10036	1252	44	3	443	3	MTMR14	3	9710414	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	116304	9710414	188312016	465	39459											
SLC6A11	6538	broad.mit.edu	37	chr3	10953779	10953779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgccttcctacaggtctGggtagatgctggaacgcaga	13	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10953779	T	T	10953779	3	4	24	1	0	0	0	0	1	0	0	0	14788	1357	47	2	922	2	SLC6A11	3	10953779	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1243365	10953779	187068651	466	39460											
TSEN2	80746	broad.mit.edu	37	chr3	12571289	12571289	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcattatcgagctagttgatGaccattttgaaggctctctc	8	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12571289	A	A	12571289	3	1	24	1	0	0	0	0	1	0	0	0	16737	1290	45	4	1199	4	TSEN2	3	12571289	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1617510	12571289	185451141	467	39461											
RAF1	5894	broad.mit.edu	37	chr3	12645699	12645699	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggacattaggtgtggatgtcGacctctgcctctgggagagg	16	8	2	1	rs80338796		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12645699	C	C	12645699	3	2	24	1	0	0	0	0	1	0	0	0	13110	1059	37	4	1220	4	RAF1	3	12645699	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	74410	12645699	185376731	468	39462											
FBLN2	2199	broad.mit.edu	37	chr3	13669343	13669343	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgctgcagacgtggatgagTgtgcgatgggcacgcacacc	15	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13669343	A	A	13669343	3	1	24	1	0	0	0	0	1	0	0	0	5756	1696	59	5	1171	5	FBLN2	3	13669343	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1023644	13669343	184353087	469	39463											
TMEM43	79188	broad.mit.edu	37	chr3	14177212	14177212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgtgctcacttccccAgccggcacccagtcccggga	10	17	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14177212	G	G	14177212	1	3	24	0	1	0	0	0	0	0	0	0	16290	203	7	5		5	TMEM43	3	14177212	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	507869	14177212	183845218	470	39464											
SLC6A6	6533	broad.mit.edu	37	chr3	14489310	14489310	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaacttcacctcccctgtCatcgagttctgggagtaagg	9	13	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14489310	T	T	14489310	2	4	24	1	0	0	0	0	0	0	0	1	14802	813	29	4		4	SLC6A6	3	14489310	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	312098	14489310	183533120	471	39465											
SLC6A6	6533	broad.mit.edu	37	chr3	14509522	14509522	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgatgatgatgatgtttaaAgaaaaagagaagtagggagc	13	1	0	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14509522	T	T	14509522	1	4	24	0	1	0	0	0	0	0	0	0	14802	87	3	5		5	SLC6A6	3	14509522	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	20212	14509522	183512908	472	39466											
FGD5	152273	broad.mit.edu	37	chr3	14939048	14939048	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcatgagggccttggaTgacatggaccatgaaggcag	15	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14939048	A	A	14939048	3	1	24	1	0	0	0	0	1	0	0	0	5893	1461	51	5	2799	5	FGD5	3	14939048	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	429526	14939048	183083382	473	39467											
EAF1	85403	broad.mit.edu	37	chr3	15480598	15480599	+	Intron	INS	-	T	T													gattctatgattttactttaINStttttttttttaaataggaa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15480599	T	T	15480598	6	5	24	0	1	1	1	0	0	0	0	0	4915	464	16	0		0	EAF1	3	15480598	Intron	INS	-	TCGA-05-4427-01A-21D-1855-08	541550	15480598	182541832	474	39468											
BTD	686	broad.mit.edu	37	chr3	15643552	15643552	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtcgtttgctggggctgttTgtgcgttgctgctgtgctac	15	9	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15643552	A	A	15643552	1	1	24	0	1	0	0	0	0	0	0	0	1560	1827	63	5		5	BTD	3	15643552	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	162954	15643552	182378878	475	39469											
ZNF385D	79750	broad.mit.edu	37	chr3	21478591	21478591	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctattgccagtggctgtcgTtgggcttttttccactttag	11	9	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21478591	C	C	21478591	3	2	24	1	0	0	0	0	1	0	0	0	18004	1725	60	5	659	5	ZNF385D	3	21478591	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	5835039	21478591	176543839	476	39470											
ZNF385D	79750	broad.mit.edu	37	chr3	21606240	21606240	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcagttccattggaattttGcctatttcattaaagaacca	6	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21606240	C	C	21606240	1	2	24	0	1	0	0	0	0	0	0	0	18004	1334	46	4		4	ZNF385D	3	21606240	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	127649	21606240	176416190	477	39471											
GPD1L	23171	broad.mit.edu	37	chr3	32201069	32201069	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtttttaagaccattgaaGagttggagaaggagatgctg	13	3	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32201069	C	C	32201069	3	2	24	1	0	0	0	0	1	0	0	0	6670	943	33	4	888	4	GPD1L	3	32201069	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	10594829	32201069	165821361	478	39472											
TMPPE	643853	broad.mit.edu	37	chr3	33135177	33135177	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgagcacagcagtcactcCcactgccagggcaggcctga	12	15	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33135177	T	T	33135177	3	4	24	1	0	0	0	0	1	0	0	0	16361	632	22	4	854	4	TMPPE	3	33135177	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	934108	33135177	164887253	479	39473											
ARPP21	10777	broad.mit.edu	37	chr3	35723355	35723356	+	Frame_Shift_Del	DEL	GA	-	-													cagaaagtctggatgaagagGagaaactggaactgcaggtg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35723356	-	-	35723355	7	5	24	1	0	1	0	1	0	0	0	0	982	1175	41	0	114	0	ARPP21	3	35723355	Frame_Shift_Del	DEL	GA	TCGA-05-4427-01A-21D-1855-08	2588178	35723355	162299075	480	39474	214	2									
ARPP21	10777	broad.mit.edu	37	chr3	35723364	35723364	+	Missense_Mutation	SNP	G	C	C													tggatgaagaggagaaactgGaactgcaggtgagtgagcat							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35723364	C	C	35723364	3	2	24	1	0	0	0	0	1	0	0	0	982	1175	41	4	123	4	ARPP21	3	35723364	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	9	35723364	162299066	481	39475	214	2									
ARPP21	10777	broad.mit.edu	37	chr3	35732307	35732307	+	Intron	DEL	G	-	-													tacttgtaaaaaggtattatGggcaaaaaatgaaaatgctg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35732307	-	-	35732307	6	5	24	0	1	1	0	1	0	0	0	0	982	1363	47	0		0	ARPP21	3	35732307	Intron	DEL	G	TCGA-05-4427-01A-21D-1855-08	8943	35732307	162290123	482	39476											
ARPP21	10777	broad.mit.edu	37	chr3	35834139	35834139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcgtgcttggtccataaCtgttgataatttactttgaa	8	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35834139	A	A	35834139	1	1	24	0	1	0	0	0	0	0	0	0	982	580	20	3		3	ARPP21	3	35834139	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	101832	35834139	162188291	483	39477											
SLC22A13	9390	broad.mit.edu	37	chr3	38311832	38311832	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcaacagccttccagtcCgaggccagtctggagtgata	10	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38311832	T	T	38311832	1	4	24	0	1	0	0	0	0	0	0	0	14557	667	23	4		4	SLC22A13	3	38311832	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2477693	38311832	159710598	484	39478											
SCN5A	6331	broad.mit.edu	37	chr3	38647682	38647682	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccctcactggggccccTtctgggttatggcatttcca	10	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38647682	G	G	38647682	1	3	24	0	1	0	0	0	0	0	0	0	14035	1624	56	5		5	SCN5A	3	38647682	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	335850	38647682	159374748	485	39479											
SCN5A	6331	broad.mit.edu	37	chr3	38649769	38649769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtttccgccttgcatccaGggctctggggaggtggagac	15	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38649769	T	T	38649769	1	4	24	0	1	0	0	0	0	0	0	0	14035	1015	35	2		2	SCN5A	3	38649769	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2087	38649769	159372661	486	39480											
WDR48	57599	broad.mit.edu	37	chr3	39110337	39110337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaacaatcattgtatcagGgtccactgaaaaggtaagga	12	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39110337	T	T	39110337	3	4	24	1	0	0	0	0	1	0	0	0	17428	1232	43	2	579	2	WDR48	3	39110337	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	460568	39110337	158912093	487	39481											
XIRP1	165904	broad.mit.edu	37	chr3	39225675	39225675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtgagctccctggcccCgtctgtagctccagaacact	10	14	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39225675	A	A	39225675	2	1	24	1	0	0	0	0	0	0	0	1	17556	639	23	1		1	XIRP1	3	39225675	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	115338	39225675	158796755	488	39482											
LYZL4	131375	broad.mit.edu	37	chr3	42448757	42448757	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcatcttctccaggctcCtggcaggtcagggcaacggt	11	14	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42448757	A	A	42448757	1	1	24	1	0	0	0	0	0	0	0	0	9221	696	24	2		2	LYZL4	3	42448757	Translation_Start_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	3223082	42448757	155573673	489	39483											
HHATL	57467	broad.mit.edu	37	chr3	42734518	42734518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttggaaggtcacggtcCttgaggctgatgcctggcac	13	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42734518	A	A	42734518	1	1	24	0	1	0	0	0	0	0	0	0	7157	696	24	2		2	HHATL	3	42734518	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	285761	42734518	155287912	490	39484											
CCDC13	152206	broad.mit.edu	37	chr3	42784571	42784571	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggatggtaaaactcgtcGttccacaatgggtcttctgc	11	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42784571	A	A	42784571	1	1	24	0	1	0	0	0	0	0	0	0	2791	1160	40	4		4	CCDC13	3	42784571	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	50053	42784571	155237859	491	39485											
TGM4	7047	broad.mit.edu	37	chr3	44932143	44932143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccatcctgggcaagtacCaactaaacgtgaaaactgga	9	10	0	1	rs148772351		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44932143	A	A	44932143	3	1	24	1	0	0	0	0	1	0	0	0	15955	595	21	2	363	2	TGM4	3	44932143	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2147572	44932143	153090287	492	39486											
SETD2	29072	broad.mit.edu	37	chr3	47162473	47162473	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttggaaagtggtctgtTgccaagacttatttgggaca	12	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47162473	G	G	47162473	3	3	24	1	0	0	0	0	1	0	0	0	14244	1812	63	5	4117	5	SETD2	3	47162473	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	2230330	47162473	150859957	493	39487											
SMARCC1	6599	broad.mit.edu	37	chr3	47702927	47702927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccagtggtacctcctccCggacccgagaaaactcctct	7	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47702927	A	A	47702927	3	1	24	1	0	0	0	0	1	0	0	0	14889	652	23	1	1172	1	SMARCC1	3	47702927	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	540454	47702927	150319503	494	39488											
COL7A1	1294	broad.mit.edu	37	chr3	48612869	48612869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccggcaaggccggaaggcCcgggggggcccctctcccca	15	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48612869	A	A	48612869	3	1	24	1	0	0	0	0	1	0	0	0	3736	623	22	2	2935	2	COL7A1	3	48612869	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	909942	48612869	149409561	495	39489											
P4HTM	54681	broad.mit.edu	37	chr3	49044257	49044257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttccaacaggagatggccCgccttgcccgagaagggggc	15	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49044257	A	A	49044257	3	1	24	1	0	0	0	0	1	0	0	0	11454	652	23	1	1643	1	P4HTM	3	49044257	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	431388	49044257	148978173	496	39490											
DAG1	1605	broad.mit.edu	37	chr3	49568631	49568631	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaacatgaaattagtgccGgtggtgaataacagactatt	9	7	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49568631	A	A	49568631	2	1	24	1	0	0	0	0	0	0	0	1	4258	1103	39	4		4	DAG1	3	49568631	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	524374	49568631	148453799	497	39491											
RNF123	63891	broad.mit.edu	37	chr3	49736441	49736441	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcactgggcactgcctttGagaacctgtccaggggcctg	12	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49736441	A	A	49736441	3	1	24	1	0	0	0	0	1	0	0	0	13544	1291	45	4	701	4	RNF123	3	49736441	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	167810	49736441	148285989	498	39492											
TRAIP	10293	broad.mit.edu	37	chr3	49885557	49885557	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctcttcagttgaggtggtCccaccccaatactctcacct	6	15	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49885557	A	A	49885557	1	1	24	0	1	0	0	0	0	0	0	0	16572	870	30	3		3	TRAIP	3	49885557	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	149116	49885557	148136873	499	39493											
DNAH1	25981	broad.mit.edu	37	chr3	52427383	52427383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcatctccaacatcaaccGctacctgacctacagcctct	5	18	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52427383	T	T	52427383	3	4	24	1	0	0	0	0	1	0	0	0	4637	1087	38	3	10766	3	DNAH1	3	52427383	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2541826	52427383	145595047	500	39494											
STAB1	23166	broad.mit.edu	37	chr3	52546838	52546838	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcccctgctccctgtgtgcGtgcagagtgccggcatcacg	13	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52546838	C	C	52546838	1	2	24	0	1	0	0	0	0	0	0	0	15355	1160	40	4		4	STAB1	3	52546838	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	119455	52546838	145475592	501	39495											
ITIH4	3700	broad.mit.edu	37	chr3	52864568	52864568	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacccatggacactggctaCcttttcggcagtagtagtct	9	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52864568	G	G	52864568	1	3	24	0	1	0	0	0	0	0	0	0	7976	521	18	4		4	ITIH4	3	52864568	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	317730	52864568	145157862	502	39496											
TMEM110	375346	broad.mit.edu	37	chr3	52883833	52883833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccgaagcgcagggactcCcactgctgccactctaccag	10	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52883833	A	A	52883833	3	1	24	1	0	0	0	0	1	0	0	0	16150	624	22	2	502	2	TMEM110	3	52883833	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	19265	52883833	145138597	503	39497											
SFMBT1	51460	broad.mit.edu	37	chr3	52941692	52941692	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagggcacaagctaagttaCtatgcccaccaggtggcctc	10	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52941692	T	T	52941692	3	4	24	1	0	0	0	0	1	0	0	0	14270	565	20	4	652	4	SFMBT1	3	52941692	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	57859	52941692	145080738	504	39498											
CACNA1D	776	broad.mit.edu	37	chr3	53836179	53836179	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctttcctggatagaacccGctattatgaaacttacatta	6	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53836179	A	A	53836179	3	1	24	1	0	0	0	0	1	0	0	0	2567	1087	38	4	5756	4	CACNA1D	3	53836179	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	894487	53836179	144186251	505	39499											
PXK	54899	broad.mit.edu	37	chr3	58380797	58380797	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctaattaggatgtttaacGaaaagggaacattgaaggat	11	3	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58380797	T	T	58380797	4	4	24	1	0	0	0	0	0	1	0	0	12957	1059	37	3	718	3	PXK	3	58380797	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4544618	58380797	139641633	506	39500											
PXK	54899	broad.mit.edu	37	chr3	58398563	58398563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacagcagtgggtcccaGcctgggccaaattccaaatg	11	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58398563	T	T	58398563	1	4	24	0	1	0	0	0	0	0	0	0	12957	986	34	3		3	PXK	3	58398563	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	17766	58398563	139623867	507	39501											
PTPRG	5793	broad.mit.edu	37	chr3	62204750	62204750	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccacggcctctgcattcaGgaaggtgaggtagcttaagt	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62204750	A	A	62204750	1	1	24	0	1	0	0	0	0	0	0	0	12910	1015	35	4		4	PTPRG	3	62204750	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3806187	62204750	135817680	508	39502											
CADPS	8618	broad.mit.edu	37	chr3	62636564	62636564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctgacttggagagctgGttctcactctcctcgcccat	8	14	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62636564	T	T	62636564	3	4	24	1	0	0	0	0	1	0	0	0	2596	1252	44	3	3077	3	CADPS	3	62636564	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	431814	62636564	135385866	509	39503											
ADAMTS9	56999	broad.mit.edu	37	chr3	64580003	64580003	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttacactgctcacgatcGggaggtttatcaagaatttc	10	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64580003	T	T	64580003	2	4	24	1	0	0	0	0	0	0	0	1	273	1103	39	1		1	ADAMTS9	3	64580003	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1943439	64580003	133442427	510	39504											
ADAMTS9	56999	broad.mit.edu	37	chr3	64587813	64587813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcctggtcacactcactcCgatcgatcacgtggtcactg	8	14	4	0	rs149680592		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64587813	A	A	64587813	3	1	24	1	0	0	0	0	1	0	0	0	273	652	23	1	2039	1	ADAMTS9	3	64587813	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7810	64587813	133434617	511	39505											
MAGI1	9223	broad.mit.edu	37	chr3	65349168	65349168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacacctctccgcaggaCcgtcctctgctaagcgcaga	8	17	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65349168	A	A	65349168	3	1	24	1	0	0	0	0	1	0	0	0	9282	507	18	3	1076	3	MAGI1	3	65349168	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	761355	65349168	132673262	512	39506											
MAGI1	9223	broad.mit.edu	37	chr3	65416486	65416486	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagccaaagccacgactGcttttccgcagctttgtgtg	11	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65416486	C	C	65416486	3	2	24	1	0	0	0	0	1	0	0	0	9282	1310	46	4	3240	4	MAGI1	3	65416486	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	67318	65416486	132605944	513	39507											
FAM19A1	407738	broad.mit.edu	37	chr3	68194707	68194707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttattcccttatcagagcCtgctccacttcccccaatac	4	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68194707	A	A	68194707	1	1	24	0	1	0	0	0	0	0	0	0	5578	696	24	2		2	FAM19A1	3	68194707	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2778221	68194707	129827723	514	39508											
FOXP1	27086	broad.mit.edu	37	chr3	71161915	71161915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttcctggcaaatgaaaCagcaaatgaaacttcccacc	5	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71161915	A	A	71161915	1	1	24	0	1	0	0	0	0	0	0	0	6086	493	17	3		3	FOXP1	3	71161915	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2967208	71161915	126860515	515	39509											
SHQ1	55164	broad.mit.edu	37	chr3	72890352	72890352	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggaatctcagaagcaccTgaatgtgttaaattttaatt	7	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72890352	C	C	72890352	5	2	24	1	0	0	0	0	0	0	1	0	14405	1594	55	5	1435	5	SHQ1	3	72890352	Splice_Site	SNP	T	TCGA-05-4427-01A-21D-1855-08	1728437	72890352	125132078	516	39510											
ROBO2	6092	broad.mit.edu	37	chr3	77614331	77614331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatcagatatttaagaaCgaggggcttgatgaggaaat	11	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77614331	A	A	77614331	1	1	24	0	1	0	0	0	0	0	0	0	13625	551	19	3		3	ROBO2	3	77614331	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4723979	77614331	120408099	517	39511											
ROBO1	6091	broad.mit.edu	37	chr3	78666912	78666912	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactaacactggagcgtccGctggaaatgttgtcctcctc	10	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78666912	A	A	78666912	2	1	24	1	0	0	0	0	0	0	0	1	13624	1078	38	4		4	ROBO1	3	78666912	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1052581	78666912	119355518	518	39512											
C3orf38	285237	broad.mit.edu	37	chr3	88205744	88205744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgaagtacgacataatGtaaagcaggcttcggatagt	10	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88205744	T	T	88205744	3	4	24	1	0	0	0	0	1	0	0	0	2250	1377	48	3	959	3	C3orf38	3	88205744	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	9538832	88205744	109816686	519	39513											
EPHA3	2042	broad.mit.edu	37	chr3	89176389	89176389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattcaaaaacaattcaagGggagctgggctggatctctt	12	7	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89176389	T	T	89176389	3	4	24	1	0	0	0	0	1	0	0	0	5210	1232	43	2	125	2	EPHA3	3	89176389	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	970645	89176389	108846041	520	39514											
EPHA3	2042	broad.mit.edu	37	chr3	89259253	89259253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgatgatgatcatgggGtgaaatttcgagagcatcag	13	5	3	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89259253	T	T	89259253	3	4	24	1	0	0	0	0	1	0	0	0	5210	1261	44	3	407	3	EPHA3	3	89259253	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	82864	89259253	108763177	521	39515											
EPHA3	2042	broad.mit.edu	37	chr3	89390098	89390098	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttctacaaggcattggatGgtaatatgaagtgtgctaag	12	4	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89390098	A	A	89390098	3	1	24	1	0	0	0	0	1	0	0	0	5210	1348	47	4	861	4	EPHA3	3	89390098	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	130845	89390098	108632332	522	39516											
EPHA3	2042	broad.mit.edu	37	chr3	89445177	89445177	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttcctcatgagctgtgctCttgcaaagaaaccagtgaca	9	10	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89445177	A	A	89445177	1	1	24	0	1	0	0	0	0	0	0	0	5210	928	32	3		3	EPHA3	3	89445177	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	55079	89445177	108577253	523	39517											
EPHA3	2042	broad.mit.edu	37	chr3	89478186	89478186	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcctcaggtaaatccaactAtattatatatgttcattgta	4	7	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89478186	T	T	89478186	1	4	24	0	1	0	0	0	0	0	0	0	5210	464	16	5		5	EPHA3	3	89478186	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	33009	89478186	108544244	524	39518											
PROS1	5627	broad.mit.edu	37	chr3	93605208	93605209	+	Missense_Mutation	DNP	CG	AA	AA													tgagttcactttccactttcCgagggaatcctgcaaagtat							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	93605209	AA	AA	93605208	3	1	24	1	0	0	0	0	1	0	0	0	12664	652	23	1	755	1	PROS1	3	93605208	Missense_Mutation	DNP	CG	TCGA-05-4427-01A-21D-1855-08	4127022	93605208	104417222	525	39519											
NSUN3	63899	broad.mit.edu	37	chr3	93794754	93794754	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaagtaaagacgtatctAggacccttgtccttctggat	9	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93794754	G	G	93794754	1	3	24	0	1	0	0	0	0	0	0	0	10774	435	15	5		5	NSUN3	3	93794754	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	189546	93794754	104227676	526	39520											
EPHA6	285220	broad.mit.edu	37	chr3	97329697	97329697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccctagactcctttttgcGggtgaggtgttcttttctga	10	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97329697	T	T	97329697	3	4	24	1	0	0	0	0	1	0	0	0	5213	1130	39	1	2691	1	EPHA6	3	97329697	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3534943	97329697	100692733	527	39521											
OR5AC2	81050	broad.mit.edu	37	chr3	97806152	97806152	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccatggtgggcaaccttGgactgatagttctaatttgg	11	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97806152	T	T	97806152	4	4	24	1	0	0	0	0	0	1	0	0	11235	1349	47	2	138	2	OR5AC2	3	97806152	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	476455	97806152	100216278	528	39522											
CLDND1	56650	broad.mit.edu	37	chr3	98240144	98240144	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttattcaaatcactggaaTtttcttgaactggacttcga	6	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98240144	C	C	98240144	3	2	24	1	0	0	0	0	1	0	0	0	3525	1493	52	5	652	5	CLDND1	3	98240144	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	433992	98240144	99782286	529	39523											
TBC1D23	55773	broad.mit.edu	37	chr3	100013984	100013987	+	Frame_Shift_Del	DEL	GGAT	-	-													gaagtcactcaggcaatatgGgatggatatctacaacaagc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100013987	-	-	100013984	7	5	24	1	0	1	0	1	0	0	0	0	15732	1241	43	0	676	0	TBC1D23	3	100013984	Frame_Shift_Del	DEL	GGAT	TCGA-05-4427-01A-21D-1855-08	1773840	100013984	98008446	530	39524											
ABI3BP	25890	broad.mit.edu	37	chr3	100566448	100566448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacatatcattattacccGgtgttgtccatgtaggttca	9	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100566448	T	T	100566448	3	4	24	1	0	0	0	0	1	0	0	0	91	1116	39	1	1783	1	ABI3BP	3	100566448	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	552464	100566448	97455982	531	39525											
IFT57	55081	broad.mit.edu	37	chr3	107937323	107937323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaattgaacagctctgtaCcctcagaggcaaatgctatg	8	10	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107937323	A	A	107937323	1	1	24	0	1	0	0	0	0	0	0	0	7632	522	18	3		3	IFT57	3	107937323	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	7370875	107937323	90085107	532	39526											
MYH15	22989	broad.mit.edu	37	chr3	108110903	108110903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatgtatgtgatctcttcCcattataatctccctaacca	3	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108110903	T	T	108110903	1	4	24	0	1	0	0	0	0	0	0	0	10128	638	22	4		4	MYH15	3	108110903	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	173580	108110903	89911527	533	39527											
PHLDB2	90102	broad.mit.edu	37	chr3	111664221	111664221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggtaagctatgattttaCatgtcgctttatgttgcctt	9	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111664221	T	T	111664221	1	4	24	0	1	0	0	0	0	0	0	0	11947	493	17	4		4	PHLDB2	3	111664221	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3553318	111664221	86358209	534	39528											
TMPRSS7	344805	broad.mit.edu	37	chr3	111799777	111799777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggagattcgggtggacCtttatcttgtcgaagaaaaa	13	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111799777	A	A	111799777	3	1	24	1	0	0	0	0	1	0	0	0	16375	681	24	2	2058	2	TMPRSS7	3	111799777	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	135556	111799777	86222653	535	39529											
BOC	91653	broad.mit.edu	37	chr3	112989921	112989921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcactggctttggccaGggggacagccaggggttctc	17	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112989921	T	T	112989921	1	4	24	0	1	0	0	0	0	0	0	0	1487	1015	35	2		2	BOC	3	112989921	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1190144	112989921	85032509	536	39530											
CCDC52	152185	broad.mit.edu	37	chr3	113225516	113225516	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaataagcatcaccagagtGggggaagacacctgaaaaaa	10	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113225516	A	A	113225516	1	1	24	0	1	0	0	0	0	0	0	0	2850	1363	47	4		4	CCDC52	3	113225516	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	235595	113225516	84796914	537	39531											
GRAMD1C	54762	broad.mit.edu	37	chr3	113604230	113604230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcatttaccttttgcGggggcagatccgcacggtaa	10	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113604230	T	T	113604230	1	4	24	0	1	0	0	0	0	0	0	0	6815	1131	39	1		1	GRAMD1C	3	113604230	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	378714	113604230	84418200	538	39532											
GRAMD1C	54762	broad.mit.edu	37	chr3	113638739	113638739	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattggacccagtaccacaGcagaaacagaaacatcacca	7	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113638739	A	A	113638739	1	1	24	0	1	0	0	0	0	0	0	0	6815	986	34	4		4	GRAMD1C	3	113638739	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	34509	113638739	84383691	539	39533											
DRD3	1814	broad.mit.edu	37	chr3	113850212	113850212	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcagatgctgtagtaacgCttcagctccagatgtgccgg	13	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113850212	G	G	113850212	3	3	24	1	0	0	0	0	1	0	0	0	4798	796	28	4	451	4	DRD3	3	113850212	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	211473	113850212	84172218	540	39534											
C3orf30	152405	broad.mit.edu	37	chr3	118865705	118865705	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatctgagagaagaccttcTgtgcagattgacagtgggtc	12	8	2	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118865705	C	C	118865705	2	2	24	1	0	0	0	0	0	0	0	1	2242	1567	55	5		5	C3orf30	3	118865705	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	5015493	118865705	79156725	541	39535											
C3orf30	152405	broad.mit.edu	37	chr3	118865774	118865774	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacagattgacagtggatcGtccgtaccatctgaccaaag	10	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118865774	A	A	118865774	2	1	24	1	0	0	0	0	0	0	0	1	2242	1132	40	4		4	C3orf30	3	118865774	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	69	118865774	79156656	542	39536											
C3orf30	152405	broad.mit.edu	37	chr3	118866462	118866463	+	Intron	DNP	CC	AG	AG													aaatgggcatttgatacctaCctgggagatcagagatctag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	118866463	AG	AG	118866462	1	1	24	0	1	0	0	0	0	0	0	0	2242	522	18	3		3	C3orf30	3	118866462	Intron	DNP	CC	TCGA-05-4427-01A-21D-1855-08	688	118866462	79155968	543	39537											
PLA1A	51365	broad.mit.edu	37	chr3	119347881	119347881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcctgtgggaccatcttGggttggggaaattccactgt	12	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119347881	T	T	119347881	1	4	24	0	1	0	0	0	0	0	0	0	12083	1363	47	2		2	PLA1A	3	119347881	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	481419	119347881	78674549	544	39538											
GTF2E1	2960	broad.mit.edu	37	chr3	120489701	120489701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatttatgcattgcttcGggagacagaggatgtgaact	12	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120489701	T	T	120489701	3	4	24	1	0	0	0	0	1	0	0	0	6921	1116	39	1	581	1	GTF2E1	3	120489701	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1141820	120489701	77532729	545	39539											
POLQ	10721	broad.mit.edu	37	chr3	121179124	121179124	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagctagtacaaagtttctAtatcacacaatccaagttct	4	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121179124	G	G	121179124	1	3	24	0	1	0	0	0	0	0	0	0	12303	464	16	5		5	POLQ	3	121179124	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	689423	121179124	76843306	546	39540											
POLQ	10721	broad.mit.edu	37	chr3	121190908	121190908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggattaagacacttttccCgctgaaggggaaagaccact	10	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121190908	A	A	121190908	3	1	24	1	0	0	0	0	1	0	0	0	12303	652	23	1	1161	1	POLQ	3	121190908	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	11784	121190908	76831522	547	39541											
POLQ	10721	broad.mit.edu	37	chr3	121203829	121203829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctcaaaatataagatcaCtaccctaatggatgttacag	5	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121203829	A	A	121203829	1	1	24	0	1	0	0	0	0	0	0	0	12303	580	20	3		3	POLQ	3	121203829	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	12921	121203829	76818601	548	39542											
HCLS1	3059	broad.mit.edu	37	chr3	121366029	121366029	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtagagatggggtttcacCgtgttagccaggatggtctc	14	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121366029	T	T	121366029	1	4	24	0	1	0	0	0	0	0	0	0	7061	667	23	4		4	HCLS1	3	121366029	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	162200	121366029	76656401	549	39543											
GOLGB1	2804	broad.mit.edu	37	chr3	121395673	121395673	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actctatgctgaattggcttCtacttgccttcttgttccag	7	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121395673	G	G	121395673	1	3	24	0	1	0	0	0	0	0	0	0	6629	928	32	4		4	GOLGB1	3	121395673	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	29644	121395673	76626757	550	39544											
SLC15A2	6565	broad.mit.edu	37	chr3	121658294	121658294	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatatgccctggttacagcTggggaggtcatgttctctgt	12	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121658294	C	C	121658294	2	2	24	1	0	0	0	0	0	0	0	1	14512	1567	55	5		5	SLC15A2	3	121658294	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	262621	121658294	76364136	551	39545											
CASR	846	broad.mit.edu	37	chr3	121976017	121976017	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccttcttcccaacttgaCgctgggatacaggatatttg	9	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121976017	T	T	121976017	3	4	24	1	0	0	0	0	1	0	0	0	2708	536	19	4	281	4	CASR	3	121976017	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	317723	121976017	76046413	552	39546											
PDIA5	10954	broad.mit.edu	37	chr3	122843223	122843223	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgtgtgtcagtgggcgtgGacccagagggcggggcatct	19	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122843223	T	T	122843223	1	4	24	0	1	0	0	0	0	0	0	0	11765	1189	41	3		3	PDIA5	3	122843223	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	867206	122843223	75179207	553	39547											
PDIA5	10954	broad.mit.edu	37	chr3	122849376	122849376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactccctgggcagatgagGgcggctccgtttatcacctg	13	12	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122849376	T	T	122849376	3	4	24	1	0	0	0	0	1	0	0	0	11765	1232	43	2	865	2	PDIA5	3	122849376	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	6153	122849376	75173054	554	39548											
ALG1L	200810	broad.mit.edu	37	chr3	125648220	125648220	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggtttgccctgagactccGagaagaagctgcgggaagga	16	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125648220	T	T	125648220	4	4	24	1	0	0	0	0	0	1	0	0	517	1059	37	3	28	3	ALG1L	3	125648220	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2798844	125648220	72374210	555	39549											
CHST13	166012	broad.mit.edu	37	chr3	126261333	126261333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttccgggacatcagccCcttctaccagcggcgcctct	8	19	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126261333	A	A	126261333	3	1	24	1	0	0	0	0	1	0	0	0	3432	623	22	2	948	2	CHST13	3	126261333	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	613113	126261333	71761097	556	39550											
MCM2	4171	broad.mit.edu	37	chr3	127318305	127318305	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgaccttccaccatttgagGatgagtccgaggggctccta	12	11	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127318305	C	C	127318305	3	2	24	1	0	0	0	0	1	0	0	0	9479	1174	41	4	157	4	MCM2	3	127318305	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1056972	127318305	70704125	557	39551											
RAB43	339122	broad.mit.edu	37	chr3	128875701	128875701	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttacccagaacatacctgTcgtctccacttctcagcttt	4	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128875701	G	G	128875701	2	3	24	1	0	0	0	0	0	0	0	1	13053	1654	58	5		5	RAB43	3	128875701	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	1557396	128875701	69146729	558	39552											
PLXND1	23129	broad.mit.edu	37	chr3	129275046	129275046	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcccccgccccagccgtctCtgctcagtatttcccagtct	7	19	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129275046	A	A	129275046	1	1	24	0	1	0	0	0	0	0	0	0	12222	928	32	3		3	PLXND1	3	129275046	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	399345	129275046	68747384	559	39553											
ALG1L2	644974	broad.mit.edu	37	chr3	129810213	129810213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcactctccgttcagggccCggtaggcctcccaccctcag	10	19	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129810213	A	A	129810213	3	1	24	1	0	0	0	0	1	0	0	0	518	666	23	1	136	1	ALG1L2	3	129810213	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	535167	129810213	68212217	560	39554											
COL6A6	131873	broad.mit.edu	37	chr3	130287008	130287008	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggtgagcaagtctcagaTtggaccagatcgggtgcaaa	13	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130287008	G	G	130287008	3	3	24	1	0	0	0	0	1	0	0	0	3735	1493	52	5	1979	5	COL6A6	3	130287008	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	476795	130287008	67735422	561	39555											
COL6A6	131873	broad.mit.edu	37	chr3	130293335	130293335	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagaaggtcaataaaaggatCgttcgcaacatctgtaccac	8	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130293335	G	G	130293335	3	3	24	1	0	0	0	0	1	0	0	0	3735	874	31	4	3539	4	COL6A6	3	130293335	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	6327	130293335	67729095	562	39556											
NEK11	79858	broad.mit.edu	37	chr3	130799236	130799236	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatgtgtttttcagctcTaaatgtttttaaaatttttt	4	3	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130799236	C	C	130799236	1	2	24	0	1	0	0	0	0	0	0	0	10418	1537	53	5		5	NEK11	3	130799236	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	505901	130799236	67223194	563	39557											
EPHB1	2047	broad.mit.edu	37	chr3	134960228	134960228	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcctcctgttttcagctcAcggcctcataatctgaacct	5	14	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134960228	C	C	134960228	1	2	24	0	1	0	0	0	0	0	0	0	5216	174	6	5		5	EPHB1	3	134960228	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	4160992	134960228	63062202	564	39558											
EPHB1	2047	broad.mit.edu	37	chr3	134967314	134967314	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagataagatgatccggaacCcggcaagtctcaagactgtg	11	9	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134967314	G	G	134967314	3	3	24	1	0	0	0	0	1	0	0	0	5216	623	22	4	2707	4	EPHB1	3	134967314	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7086	134967314	63055116	565	39559											
IL20RB	53833	broad.mit.edu	37	chr3	136699173	136699173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctcattctgttgtctagGctggagtgcagtggtgcaat	13	7	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136699173	T	T	136699173	1	4	24	0	1	0	0	0	0	0	0	0	7739	1218	42	3		3	IL20RB	3	136699173	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1731859	136699173	61323257	566	39560											
IL20RB	53833	broad.mit.edu	37	chr3	136699284	136699284	+	Intron	DEL	C	-	-													actatgagcccacctgtcagCcaggctatctgccttgatcc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136699284	-	-	136699284	6	5	24	0	1	1	0	1	0	0	0	0	7739	754	26	0		0	IL20RB	3	136699284	Intron	DEL	C	TCGA-05-4427-01A-21D-1855-08	111	136699284	61323146	567	39561											
MRAS	22808	broad.mit.edu	37	chr3	138119351	138119351	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggatctctgtgccactttGatcaagttgagctttgcctt	10	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138119351	C	C	138119351	1	2	24	0	1	0	0	0	0	0	0	0	9849	1305	45	4		4	MRAS	3	138119351	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1420067	138119351	59903079	568	39562											
CLSTN2	64084	broad.mit.edu	37	chr3	140167591	140167591	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatcaattgcttttaaAtgatgtataccaaaaaagca	4	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140167591	G	G	140167591	1	3	24	0	1	0	0	0	0	0	0	0	3594	116	4	5		5	CLSTN2	3	140167591	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2048240	140167591	57854839	569	39563											
CLSTN2	64084	broad.mit.edu	37	chr3	140282640	140282640	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgtccattatagaggtgaTgaaagtgaagcccagacagg	12	6	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140282640	A	A	140282640	1	1	24	0	1	0	0	0	0	0	0	0	3594	1479	51	5		5	CLSTN2	3	140282640	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	115049	140282640	57739790	570	39564											
ACPL2	92370	broad.mit.edu	37	chr3	140997113	140997113	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcaaagtgaaatccagccCtgcgctgggccttgcagctg	11	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140997113	G	G	140997113	1	3	24	0	1	0	0	0	0	0	0	0	166	696	24	4		4	ACPL2	3	140997113	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	714473	140997113	57025317	571	39565											
PLOD2	5352	broad.mit.edu	37	chr3	145828019	145828019	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatctacaaaaatggttgTttcattagtctttataactt	4	6	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145828019	A	A	145828019	1	1	24	0	1	0	0	0	0	0	0	0	12197	1740	60	5		5	PLOD2	3	145828019	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	4830906	145828019	52194411	572	39566											
PLSCR2	57047	broad.mit.edu	37	chr3	146177842	146177842	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgtgtccagcctggtgCttagggtagacaatatgtcc	12	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146177842	T	T	146177842	1	4	24	0	1	0	0	0	0	0	0	0	12205	812	28	4		4	PLSCR2	3	146177842	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	349823	146177842	51844588	573	39567											
HLTF	6596	broad.mit.edu	37	chr3	148766766	148766766	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttagccaccttatgctaTgtaatggactatctccttta	5	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148766766	A	A	148766766	3	1	24	1	0	0	0	0	1	0	0	0	7282	1464	51	5	1429	5	HLTF	3	148766766	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	2588924	148766766	49255664	574	39568											
HLTF	6596	broad.mit.edu	37	chr3	148782774	148782774	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttaaattgctacccaattCtggagcaactgaaggggagg	11	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148782774	A	A	148782774	1	1	24	0	1	0	0	0	0	0	0	0	7282	928	32	3		3	HLTF	3	148782774	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	16008	148782774	49239656	575	39569											
GPR171	29909	broad.mit.edu	37	chr3	150916837	150916837	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgtgtcagctgaagacAgcggtcaatgctgacaaatg	13	8	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150916837	T	T	150916837	3	4	24	1	0	0	0	0	1	0	0	0	6733	188	7	5	626	5	GPR171	3	150916837	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2134063	150916837	47105593	576	39570											
MED12L	116931	broad.mit.edu	37	chr3	151078344	151078344	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttagcctacctctatgatCtctatgtgtcatgtagccac	6	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151078344	A	A	151078344	3	1	24	1	0	0	0	0	1	0	0	0	9522	913	32	3	2877	3	MED12L	3	151078344	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	161507	151078344	46944086	577	39571											
AADAC	13	broad.mit.edu	37	chr3	151535346	151535346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggggttgttttacatcCatggtggaggctggtgcgtg	18	5	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151535346	A	A	151535346	3	1	24	1	0	0	0	0	1	0	0	0	10	594	21	2	337	2	AADAC	3	151535346	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	457002	151535346	46487084	578	39572											
GPR149	344758	broad.mit.edu	37	chr3	154139069	154139069	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgtgtggagctgtccagaGagggcgtggtgctgatttct	16	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154139069	A	A	154139069	3	1	24	1	0	0	0	0	1	0	0	0	6719	942	33	4	821	4	GPR149	3	154139069	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2603723	154139069	43883361	579	39573											
PLCH1	23007	broad.mit.edu	37	chr3	155199796	155199796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaattgaaacagagagtgGgatcagctattacatcctcc	9	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155199796	T	T	155199796	3	4	24	1	0	0	0	0	1	0	0	0	12132	1232	43	2	1042	2	PLCH1	3	155199796	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1060727	155199796	42822634	580	39574											
GFM1	85476	broad.mit.edu	37	chr3	158402501	158402501	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctgtctgttttcctgataGatcatcatagcctcagaagg	9	10	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158402501	T	T	158402501	1	4	24	0	1	0	0	0	0	0	0	0	6405	957	33	3		3	GFM1	3	158402501	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3202705	158402501	39619929	581	39575											
IQCJ	654502	broad.mit.edu	37	chr3	158983083	158983083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggacaagttgcctggtgGaaggaaggtgattcttctct	15	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158983083	T	T	158983083	3	4	24	1	0	0	0	0	1	0	0	0	7882	1174	41	3	437	3	IQCJ	3	158983083	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	580582	158983083	39039347	582	39576											
SCHIP1	29970	broad.mit.edu	37	chr3	159606466	159606466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtagggccccacattgGgaaagacacagactgggaaa	14	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159606466	T	T	159606466	1	4	24	0	1	0	0	0	0	0	0	0	14017	1247	43	2		2	SCHIP1	3	159606466	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	623383	159606466	38415964	583	39577											
KPNA4	3840	broad.mit.edu	37	chr3	160243951	160243951	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atactgacagtaagcattttCagaaaacacaaagcactggg	8	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160243951	G	G	160243951	1	3	24	0	1	0	0	0	0	0	0	0	8503	841	29	4		4	KPNA4	3	160243951	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	637485	160243951	37778479	584	39578											
OTOL1	131149	broad.mit.edu	37	chr3	161214687	161214687	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccacaccacataccaaatTtacgaagaaatctgaggaaa	6	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161214687	G	G	161214687	3	3	24	1	0	0	0	0	1	0	0	0	11398	1841	64	5	94	5	OTOL1	3	161214687	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	970736	161214687	36807743	585	39579											
OTOL1	131149	broad.mit.edu	37	chr3	161221532	161221532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcccagaataagaagcaGttcaagtccagagaaactct	10	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161221532	T	T	161221532	3	4	24	1	0	0	0	0	1	0	0	0	11398	1020	36	3	1250	3	OTOL1	3	161221532	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	6845	161221532	36800898	586	39580											
SI	6476	broad.mit.edu	37	chr3	164714444	164714444	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgtctgctccagtctaaAatatattgttatatttagtt	6	5	2	1	rs115606442	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164714444	C	C	164714444	1	2	24	0	1	0	0	0	0	0	0	0	14410	29	1	5		5	SI	3	164714444	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	3492912	164714444	33307986	587	39581											
SI	6476	broad.mit.edu	37	chr3	164760918	164760918	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatccatcttctgcaaaGttcttctgtggtttcagcca	7	11	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164760918	A	A	164760918	3	1	24	1	0	0	0	0	1	0	0	0	14410	1029	36	4	3678	4	SI	3	164760918	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	46474	164760918	33261512	588	39582											
SI	6476	broad.mit.edu	37	chr3	164785251	164785251	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacatactgatgaggaactTcatatcttctattatttgga	6	6	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164785251	C	C	164785251	3	2	24	1	0	0	0	0	1	0	0	0	14410	1783	62	5	5143	5	SI	3	164785251	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	24333	164785251	33237179	589	39583											
SLITRK3	22865	broad.mit.edu	37	chr3	164907748	164907748	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtggaattcccaaactagCctctacctcagagtcagaca	7	12	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164907748	G	G	164907748	3	3	24	1	0	0	0	0	1	0	0	0	14858	739	26	4	2066	4	SLITRK3	3	164907748	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	122497	164907748	33114682	590	39584											
SLITRK3	22865	broad.mit.edu	37	chr3	164908349	164908349	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaactgttggtatataatttCctcatagaattcctctgcag	6	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164908349	G	G	164908349	3	3	24	1	0	0	0	0	1	0	0	0	14858	854	30	4	2667	4	SLITRK3	3	164908349	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	601	164908349	33114081	591	39585											
ZBBX	79740	broad.mit.edu	37	chr3	167016055	167016056	+	Intron	DNP	AG	TA	TA													gctcagtatttcctaagatgAgaacagactgttttagaaaa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	167016056	TA	TA	167016055	1	4	24	0	1	0	0	0	0	0	0	0	17643	319	11	5		5	ZBBX	3	167016055	Intron	DNP	AG	TCGA-05-4427-01A-21D-1855-08	2107706	167016055	31006375	592	39586											
WDR49	151790	broad.mit.edu	37	chr3	167217820	167217820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttaacagtcaaaccacaCtttgtttcactgcaaactac	3	12	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167217820	A	A	167217820	1	1	24	0	1	0	0	0	0	0	0	0	17429	580	20	3		3	WDR49	3	167217820	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	201765	167217820	30804610	593	39587											
SLC7A14	57709	broad.mit.edu	37	chr3	170198912	170198912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccccgacacgatgcaggCcaccactggtgtctctgtgt	11	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170198912	A	A	170198912	3	1	24	1	0	0	0	0	1	0	0	0	14810	739	26	3	1164	3	SLC7A14	3	170198912	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2981092	170198912	27823518	594	39588											
SLC2A2	6514	broad.mit.edu	37	chr3	170727834	170727834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatcaagagagctccaaCtaatgacagaatgtttgcta	7	11	1	3	rs144125084		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170727834	A	A	170727834	3	1	24	1	0	0	0	0	1	0	0	0	14658	565	20	3	1197	3	SLC2A2	3	170727834	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	528922	170727834	27294596	595	39589											
NAALADL2	254827	broad.mit.edu	37	chr3	175164985	175164985	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttaaatttctgtttactAaggattatcttcctttgtct	5	6	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175164985	G	G	175164985	1	3	24	0	1	0	0	0	0	0	0	0	10224	377	13	5		5	NAALADL2	3	175164985	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	4437151	175164985	22857445	596	39590											
GNB4	59345	broad.mit.edu	37	chr3	179138615	179138615	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagaatctgaatgtcattTgcctctatgtcaaattattt	5	7	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179138615	A	A	179138615	1	1	24	0	1	0	0	0	0	0	0	0	6584	1827	63	5		5	GNB4	3	179138615	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3973630	179138615	18883815	597	39591											
ATP11B	23200	broad.mit.edu	37	chr3	182597421	182597421	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attatgctgtcgtatggctcCactgcagaaagcaaaagtat	9	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182597421	G	G	182597421	3	3	24	1	0	0	0	0	1	0	0	0	1124	594	21	4	2468	4	ATP11B	3	182597421	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3458806	182597421	15425009	598	39592											
B3GNT5	84002	broad.mit.edu	37	chr3	182987453	182987453	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaactattttgtaaaatAagaagacttccatttttaat	4	4	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182987453	T	T	182987453	1	4	24	0	1	0	0	0	0	0	0	0	1265	377	13	5		5	B3GNT5	3	182987453	5'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	390032	182987453	15034977	599	39593											
HTR3C	170572	broad.mit.edu	37	chr3	183770953	183770953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaagatgggacgagaaCagggaagaccagagtgtggt	17	4	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183770953	A	A	183770953	1	1	24	0	1	0	0	0	0	0	0	0	7516	493	17	3		3	HTR3C	3	183770953	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	783500	183770953	14251477	600	39594											
FAM131A	131408	broad.mit.edu	37	chr3	184059582	184059582	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactatccaggagatcgctgCgctggccaggtcctccctgc	11	15	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184059582	T	T	184059582	1	4	24	0	1	0	0	0	0	0	0	0	5485	768	27	4		4	FAM131A	3	184059582	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	288629	184059582	13962848	601	39595											
CRYGS	1427	broad.mit.edu	37	chr3	186256439	186256439	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctatttggaccacaaggcCagccagcatttgggccccag	11	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186256439	A	A	186256439	1	1	24	0	1	0	0	0	0	0	0	0	3951	609	21	2		2	CRYGS	3	186256439	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	2196857	186256439	11765991	602	39596											
TBCCD1	55171	broad.mit.edu	37	chr3	186282067	186282067	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggggacctgcaaggcacCcactataaagggttctgctt	13	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186282067	T	T	186282067	3	4	24	1	0	0	0	0	1	0	0	0	15754	623	22	4	1645	4	TBCCD1	3	186282067	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	25628	186282067	11740363	603	39597											
RTP1	132112	broad.mit.edu	37	chr3	186917319	186917319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccgtcttctattcctccCtctcctcccgtctccgcagg	6	21	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186917319	A	A	186917319	1	1	24	0	1	0	0	0	0	0	0	0	13844	696	24	2		2	RTP1	3	186917319	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	635252	186917319	11105111	604	39598											
MASP1	5648	broad.mit.edu	37	chr3	186937956	186937956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcccacagtcatcacccCaggacacagtgcccaccagg	7	18	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186937956	A	A	186937956	3	1	24	1	0	0	0	0	1	0	0	0	9414	595	21	2	100	2	MASP1	3	186937956	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	20637	186937956	11084474	605	39599											
RTP2	344892	broad.mit.edu	37	chr3	187419860	187419860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccgctggctttgccacCtccatcttctcatagaagac	7	15	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187419860	A	A	187419860	3	1	24	1	0	0	0	0	1	0	0	0	13845	680	24	2	628	2	RTP2	3	187419860	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	481904	187419860	10602570	606	39600											
CCDC50	152137	broad.mit.edu	37	chr3	191078943	191078943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacgcattcaggagaagaagGatgaggtataacttagttac	12	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191078943	A	A	191078943	3	1	24	1	0	0	0	0	1	0	0	0	2848	1174	41	4	339	4	CCDC50	3	191078943	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3659083	191078943	6943487	607	39601											
CCDC50	152137	broad.mit.edu	37	chr3	191092810	191092810	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcataactctcattaaattaAtctgcatttttatttttcac	1	8	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191092810	G	G	191092810	1	3	24	0	1	0	0	0	0	0	0	0	2848	116	4	5		5	CCDC50	3	191092810	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	13867	191092810	6929620	608	39602											
ATP13A5	344905	broad.mit.edu	37	chr3	193029690	193029690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaacagcttcctccttccCcacgaggggttgaactgttt	10	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193029690	A	A	193029690	3	1	24	1	0	0	0	0	1	0	0	0	1131	623	22	2	1338	2	ATP13A5	3	193029690	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1936880	193029690	4992740	609	39603											
OPA1	4976	broad.mit.edu	37	chr3	193366713	193366713	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactttactgtacaggttatAatgaaatgctaaaacttaga	7	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193366713	G	G	193366713	1	3	24	0	1	0	0	0	0	0	0	0	10965	377	13	5		5	OPA1	3	193366713	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	337023	193366713	4655717	610	39604											
OPA1	4976	broad.mit.edu	37	chr3	193377302	193377302	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgaaaacatggtgggtccAgactggaaaaagaggtggtt	14	4	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193377302	T	T	193377302	2	4	24	1	0	0	0	0	0	0	0	1	10965	175	7	5		5	OPA1	3	193377302	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	10589	193377302	4645128	611	39605											
CPN2	1370	broad.mit.edu	37	chr3	194062503	194062503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcaggttggacaggtggGcaaaggtgccctcagcgaca	15	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194062503	T	T	194062503	3	4	24	1	0	0	0	0	1	0	0	0	3842	1203	42	3	712	3	CPN2	3	194062503	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	685201	194062503	3959927	612	39606											
ACAP2	23527	broad.mit.edu	37	chr3	195012484	195012484	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatggtccccgcccttggaCatctctttggttgacattag	9	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	195012484	G	G	195012484	3	3	24	1	0	0	0	0	1	0	0	0	119	478	17	4	338	4	ACAP2	3	195012484	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	949981	195012484	3009946	613	39607											
ZDHHC19	131540	broad.mit.edu	37	chr3	195936325	195936325	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttggacaccattgcagGcggaaggccccgtggttcac	12	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195936325	T	T	195936325	2	4	24	1	0	0	0	0	0	0	0	1	17735	1190	42	3		3	ZDHHC19	3	195936325	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	923841	195936325	2086105	614	39608											
C3orf43	255798	broad.mit.edu	37	chr3	196241863	196241863	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgatccgcccacctcGgcctcccagtgtgctgggat	11	17	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196241863	A	A	196241863	1	1	24	0	1	0	0	0	0	0	0	0	2252	1131	39	4		4	C3orf43	3	196241863	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	305538	196241863	1780567	615	39609											
IQCG	84223	broad.mit.edu	37	chr3	197619552	197619552	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actggcctttgtggctttgaGagcatttagttcattctgtt	10	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197619552	C	C	197619552	3	2	24	1	0	0	0	0	1	0	0	0	7880	942	33	4	301	4	IQCG	3	197619552	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1377689	197619552	402878	616	39610											
IQCG	84223	broad.mit.edu	37	chr3	197670690	197670690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtactgaacgggcatgaTgtagttcagaatagagagct	12	6	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197670690	C	C	197670690	3	2	24	1	0	0	0	0	1	0	0	0	7880	1464	51	5	1126	5	IQCG	3	197670690	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	51138	197670690	351740	617	39611											
ZNF595	152687	broad.mit.edu	37	chr4	59182	59182	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctttttcttcagaattaTacaatactttagataacatt	2	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59182	G	G	59182	1	3	24	0	1	0	0	0	0	0	0	0	18152	1421	49	5		5	ZNF595	4	59182	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08		59182	191095094	618	39612											
GAK	2580	broad.mit.edu	37	chr4	845702	845702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctgccaggagctgctgCctttgggcgtggtggccgtt	16	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	845702	A	A	845702	3	1	24	1	0	0	0	0	1	0	0	0	6257	739	26	3	607	3	GAK	4	845702	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	786520	845702	190308574	619	39613											
RNF4	6047	broad.mit.edu	37	chr4	2514677	2514677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttcctgaaagtctctcGgatgcccgcgctaaggcaga	12	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2514677	T	T	2514677	1	4	24	0	1	0	0	0	0	0	0	0	13603	1131	39	1		1	RNF4	4	2514677	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1668975	2514677	188639599	620	39614											
TNIP2	79155	broad.mit.edu	37	chr4	2757801	2757801	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcagctgctcccggaagcgCgcaacctgctccagcagcgc	12	18	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2757801	G	G	2757801	2	3	24	1	0	0	0	0	0	0	0	1	16438	755	27	4		4	TNIP2	4	2757801	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	243124	2757801	188396475	621	39615											
HTT	3064	broad.mit.edu	37	chr4	3174698	3174698	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcttatcttccaaccccAgcaagtcacaaggccgagca	8	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3174698	T	T	3174698	3	4	24	1	0	0	0	0	1	0	0	0	7527	188	7	5	4128	5	HTT	4	3174698	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	416897	3174698	187979578	622	39616											
HTT	3064	broad.mit.edu	37	chr4	3240378	3240378	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggatggagtgggaaagcctgGaggtggagttgcctccgact	18	7	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3240378	C	C	3240378	1	2	24	0	1	0	0	0	0	0	0	0	7527	1189	41	4		4	HTT	4	3240378	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	65680	3240378	187913898	623	39617											
OTOP1	133060	broad.mit.edu	37	chr4	4204167	4204167	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggccactcacctctctcaCcactcacctgttgttatgtt	6	15	4	0	rs73792857	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4204167	G	G	4204167	1	3	24	0	1	0	0	0	0	0	0	0	11399	522	18	4		4	OTOP1	4	4204167	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	963789	4204167	186950109	624	39618											
EVC2	132884	broad.mit.edu	37	chr4	5664911	5664911	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtcgttaagggaaaggtcCtcattcacgccatcagctga	11	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5664911	G	G	5664911	3	3	24	1	0	0	0	0	1	0	0	0	5328	680	24	4	2914	4	EVC2	4	5664911	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1460744	5664911	185489365	625	39619											
EVC	2121	broad.mit.edu	37	chr4	5721080	5721080	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagagaagtgcagatgtcgAaggacaaggaagctgttgat	15	4	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5721080	T	T	5721080	4	4	24	1	0	0	0	0	0	1	0	0	5327	247	9	5	286	5	EVC	4	5721080	Nonsense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	56169	5721080	185433196	626	39620											
CRMP1	1400	broad.mit.edu	37	chr4	5843073	5843073	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatgatgtcggctgcactcTtgctcatgaccttggtgatg	12	10	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5843073	C	C	5843073	3	2	24	1	0	0	0	0	1	0	0	0	3922	1609	56	5	973	5	CRMP1	4	5843073	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	121993	5843073	185311203	627	39621											
JAKMIP1	152789	broad.mit.edu	37	chr4	6114498	6114498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgctggtcagcttggccCgcagctcctcgttggccatc	12	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6114498	A	A	6114498	3	1	24	1	0	0	0	0	1	0	0	0	8010	652	23	1	2570	1	JAKMIP1	4	6114498	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	271425	6114498	185039778	628	39622											
PPP2R2C	5522	broad.mit.edu	37	chr4	6325266	6325266	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagggtcacgtcccgcttGgtgttccgatcgaacatgcg	12	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6325266	A	A	6325266	2	1	24	1	0	0	0	0	0	0	0	1	12487	1335	47	4		4	PPP2R2C	4	6325266	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	210768	6325266	184829010	629	39623											
DRD5	1816	broad.mit.edu	37	chr4	9783983	9783983	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccggttactggccctttggAgcgttctgcgacgtctgggt	15	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9783983	T	T	9783983	2	4	24	1	0	0	0	0	0	0	0	1	4800	291	11	5		5	DRD5	4	9783983	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	3458717	9783983	181370293	630	39624											
DRD5	1816	broad.mit.edu	37	chr4	9784742	9784742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatctatgccttcaacgcCgactttcagaaggtgtttgc	9	11	4	1	rs143226097		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9784742	A	A	9784742	2	1	24	1	0	0	0	0	0	0	0	1	4800	639	23	1		1	DRD5	4	9784742	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	759	9784742	181369534	631	39625											
BOD1L	259282	broad.mit.edu	37	chr4	13603728	13603728	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtttcactttcagcaaatCcctctgtgacaacagcccca	6	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13603728	T	T	13603728	3	4	24	1	0	0	0	0	1	0	0	0	1489	855	30	4	4427	4	BOD1L	4	13603728	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3818986	13603728	177550548	632	39626											
BOD1L	259282	broad.mit.edu	37	chr4	13606445	13606445	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgtttttaagtgtgcttttCtgtttctggggctcttcggt	11	7	3	0	rs146630428	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13606445	T	T	13606445	2	4	24	1	0	0	0	0	0	0	0	1	1489	912	32	4		4	BOD1L	4	13606445	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2717	13606445	177547831	633	39627											
BOD1L	259282	broad.mit.edu	37	chr4	13612688	13612688	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcactagaatcactagttTgagtttttgttttattctgt	6	6	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13612688	C	C	13612688	3	2	24	1	0	0	0	0	1	0	0	0	1489	1812	63	5	7878	5	BOD1L	4	13612688	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	6243	13612688	177541588	634	39628											
LDB2	9079	broad.mit.edu	37	chr4	16504244	16504244	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccacgggcctattgacaGtggattctggtgccgatcat	11	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16504244	T	T	16504244	1	4	24	0	1	0	0	0	0	0	0	0	8768	1044	36	3		3	LDB2	4	16504244	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	2891556	16504244	174650032	635	39629											
LDB2	9079	broad.mit.edu	37	chr4	16899977	16899977	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaggttgaagtacttacCtctgtgcgagactgcagtct	10	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16899977	T	T	16899977	2	4	24	1	0	0	0	0	0	0	0	1	8768	695	24	4		4	LDB2	4	16899977	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	395733	16899977	174254299	636	39630											
SLC34A2	10568	broad.mit.edu	37	chr4	25667960	25667960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctatctgagggtgggaaGgacgggggaggaattcactc	17	6	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25667960	T	T	25667960	1	4	24	0	1	0	0	0	0	0	0	0	14682	1015	35	2		2	SLC34A2	4	25667960	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	8767983	25667960	165486316	637	39631											
UGDH	7358	broad.mit.edu	37	chr4	39512025	39512025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaggatcttttctctgGgaacccagtgctcatataca	10	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39512025	T	T	39512025	3	4	24	1	0	0	0	0	1	0	0	0	17066	1232	43	2	905	2	UGDH	4	39512025	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	13844065	39512025	151642251	638	39632											
UBE2K	3093	broad.mit.edu	37	chr4	39780016	39780016	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttgtcttcaaaatcatggGatgtagagactgcaacagaa	9	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39780016	A	A	39780016	3	1	24	1	0	0	0	0	1	0	0	0	16988	1174	41	4	591	4	UBE2K	4	39780016	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	267991	39780016	151374260	639	39633											
N4BP2	55728	broad.mit.edu	37	chr4	40104082	40104082	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggtgaaaatttagagaattCtggttctactttaagtttaa	8	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40104082	G	G	40104082	3	3	24	1	0	0	0	0	1	0	0	0	10204	913	32	4	623	4	N4BP2	4	40104082	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	324066	40104082	151050194	640	39634											
N4BP2	55728	broad.mit.edu	37	chr4	40104131	40104131	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcacattcagttttgaaCgagtccaagtgttttataaa	6	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40104131	T	T	40104131	2	4	24	1	0	0	0	0	0	0	0	1	10204	535	19	4		4	N4BP2	4	40104131	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	49	40104131	151050145	641	39635											
SLC30A9	10463	broad.mit.edu	37	chr4	42031439	42031439	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacccacatatcagaaccacAtatcaggacccccaccagga	5	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42031439	G	G	42031439	1	3	24	0	1	0	0	0	0	0	0	0	14676	232	8	5		5	SLC30A9	4	42031439	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1927308	42031439	149122837	642	39636											
GRXCR1	389207	broad.mit.edu	37	chr4	42895198	42895198	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgccatcactagaattggCtctgatattgctatctggca	9	10	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42895198	A	A	42895198	1	1	24	0	1	0	0	0	0	0	0	0	6878	812	28	3		3	GRXCR1	4	42895198	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	863759	42895198	148259078	643	39637											
GUF1	60558	broad.mit.edu	37	chr4	44693729	44693729	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatatttattgatcaaaataGagttatgcttaaatatctct	5	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44693729	C	C	44693729	3	2	24	1	0	0	0	0	1	0	0	0	6964	942	33	4	1576	4	GUF1	4	44693729	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1798531	44693729	146460547	644	39638											
CWH43	80157	broad.mit.edu	37	chr4	48996880	48996880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaaaatcggcagttatgCctggaggaagcaatgcctcc	10	11	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48996880	A	A	48996880	1	1	24	0	1	0	0	0	0	0	0	0	4106	754	26	3		3	CWH43	4	48996880	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4303151	48996880	142157396	645	39639											
CWH43	80157	broad.mit.edu	37	chr4	49040333	49040333	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctagaaaatcaccacaaaaCatgtgagcttaaaacaacag	5	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49040333	T	T	49040333	1	4	24	0	1	0	0	0	0	0	0	0	4106	493	17	4		4	CWH43	4	49040333	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	43453	49040333	142113943	646	39640											
SPATA18	132671	broad.mit.edu	37	chr4	52944956	52944956	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcaagatccatgtgagaaAatcgttgacaccatcttatg	7	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52944956	T	T	52944956	3	4	24	1	0	0	0	0	1	0	0	0	15119	14	1	5	1106	5	SPATA18	4	52944956	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	3904623	52944956	138209320	647	39641											
SPATA18	132671	broad.mit.edu	37	chr4	52946138	52946138	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcatgaatacattgtcttGtctgtttcctgaaaacaatt	5	7	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52946138	A	A	52946138	1	1	24	0	1	0	0	0	0	0	0	0	15119	1392	48	4		4	SPATA18	4	52946138	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1182	52946138	138208138	648	39642											
SCFD2	152579	broad.mit.edu	37	chr4	54139940	54139940	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtcaaggtttttctctGgaagtcaaaacattaattat	6	5	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54139940	C	C	54139940	1	2	24	0	1	0	0	0	0	0	0	0	14002	1363	47	4		4	SCFD2	4	54139940	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1193802	54139940	137014336	649	39643											
CEP135	9662	broad.mit.edu	37	chr4	56858234	56858234	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactcatctcatcagaaaacAgaggtgaactcacttaggta	8	9	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56858234	G	G	56858234	2	3	24	1	0	0	0	0	0	0	0	1	3277	175	7	5		5	CEP135	4	56858234	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	2718294	56858234	134296042	650	39644											
KIAA1211	57482	broad.mit.edu	37	chr4	57189609	57189609	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagagaaagtggaaactgCtcagccgctgtggataacgt	12	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57189609	T	T	57189609	3	4	24	1	0	0	0	0	1	0	0	0	8285	797	28	4	3276	4	KIAA1211	4	57189609	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	331375	57189609	133964667	651	39645											
C4orf14	84273	broad.mit.edu	37	chr4	57839404	57839404	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctacttgtttggtggatttGtgtgtacccataacagggtc	11	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57839404	C	C	57839404	3	2	24	1	0	0	0	0	1	0	0	0	2274	1368	48	4	691	4	C4orf14	4	57839404	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	649795	57839404	133314872	652	39646											
IGFBP7	3490	broad.mit.edu	37	chr4	57939337	57939337	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttgtgtcgtctttttaaGttttccttagatggtctgtc	8	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57939337	A	A	57939337	1	1	24	0	1	0	0	0	0	0	0	0	7654	1044	36	4		4	IGFBP7	4	57939337	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	99933	57939337	133214939	653	39647											
TECRL	253017	broad.mit.edu	37	chr4	65274936	65274936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggagttggtcttagaGggcccgctgagagtacaagt	15	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65274936	T	T	65274936	3	4	24	1	0	0	0	0	1	0	0	0	15868	1000	35	2	1005	2	TECRL	4	65274936	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	7335599	65274936	125879340	654	39648											
EPHA5	2044	broad.mit.edu	37	chr4	66213885	66213885	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactttcggaaagctattgCttctggggcagtccatctga	10	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66213885	T	T	66213885	3	4	24	1	0	0	0	0	1	0	0	0	5212	797	28	4	584	4	EPHA5	4	66213885	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	938949	66213885	124940391	655	39649											
EPHA5	2044	broad.mit.edu	37	chr4	66213941	66213941	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaaaattgaaaaagatttAaaaaacttcctacatacttc	2	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66213941	T	T	66213941	1	4	24	0	1	0	0	0	0	0	0	0	5212	377	13	5		5	EPHA5	4	66213941	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	56	66213941	124940335	656	39650											
EPHA5	2044	broad.mit.edu	37	chr4	66439851	66439851	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaagaagcagctgcggaaGcccagacaccaggaaggtga	14	9	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66439851	A	A	66439851	1	1	24	0	1	0	0	0	0	0	0	0	5212	986	34	4		4	EPHA5	4	66439851	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	225910	66439851	124714425	657	39651											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68725406	68725406	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacgtgctggccttacaagaGagagagatcaaagaaagtca	11	8	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68725406	T	T	68725406	1	4	24	0	1	0	0	0	0	0	0	0	16364	957	33	3		3	TMPRSS11D	4	68725406	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2285555	68725406	122428870	658	39652											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68964771	68964771	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggtctgtgataacagaaAgaaaatagagacaataaaaa	8	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68964771	C	C	68964771	1	2	24	0	1	0	0	0	0	0	0	0	16366	87	3	5		5	TMPRSS11F	4	68964771	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	239365	68964771	122189505	659	39653											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69107491	69107491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaagatcgtagtccataGtggccaagatctttgggaag	11	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69107491	T	T	69107491	3	4	24	1	0	0	0	0	1	0	0	0	16363	1020	36	3	1246	3	TMPRSS11B	4	69107491	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	142720	69107491	122046785	660	39654											
SMR3A	26952	broad.mit.edu	37	chr4	71232510	71232510	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatttccaccacccctttcTccaccctatggtccagggag	7	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71232510	C	C	71232510	2	2	24	1	0	0	0	0	0	0	0	1	14925	1538	54	5		5	SMR3A	4	71232510	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	2125019	71232510	119921766	661	39655											
RUFY3	22902	broad.mit.edu	37	chr4	71634199	71634199	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaccatttttgtccttgtCtctggatttttgagattttt	6	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71634199	G	G	71634199	1	3	24	0	1	0	0	0	0	0	0	0	13851	928	32	4		4	RUFY3	4	71634199	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	401689	71634199	119520077	662	39656											
RUFY3	22902	broad.mit.edu	37	chr4	71654661	71654661	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctggatgacctcagagctCtcaagcatgaacttgccttt	9	11	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71654661	A	A	71654661	3	1	24	1	0	0	0	0	1	0	0	0	13851	913	32	3	1614	3	RUFY3	4	71654661	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	20462	71654661	119499615	663	39657											
COX18	285521	broad.mit.edu	37	chr4	73923758	73923758	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaggaaatcaagtaacatCtgaatttctaagtctaaata	5	5	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73923758	A	A	73923758	1	1	24	0	1	0	0	0	0	0	0	0	3799	928	32	3		3	COX18	4	73923758	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	2269097	73923758	117230518	664	39658											
ANKRD17	26057	broad.mit.edu	37	chr4	73957800	73957800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcacagtgagtgctgtggCagtttgagatgttgatgaca	15	5	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73957800	A	A	73957800	3	1	24	1	0	0	0	0	1	0	0	0	646	710	25	3	2290	3	ANKRD17	4	73957800	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	34042	73957800	117196476	665	39659											
ALB	213	broad.mit.edu	37	chr4	74277834	74277834	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatctgcttgaatgtgctGatgacagggtaaagagtcgt	14	5	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74277834	T	T	74277834	3	4	24	1	0	0	0	0	1	0	0	0	486	1290	45	3	861	3	ALB	4	74277834	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	320034	74277834	116876442	666	39660											
AFM	173	broad.mit.edu	37	chr4	74353498	74353498	+	Frame_Shift_Del	DEL	G	-	-													cttatcaaaaacatgtctgtGgggcacttttgaaatttgga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74353498	-	-	74353498	7	5	24	1	0	1	0	1	0	0	0	0	361	1348	47	0	695	0	AFM	4	74353498	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	75664	74353498	116800778	667	39661											
RASSF6	166824	broad.mit.edu	37	chr4	74450995	74450995	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctttttctcaccagagctgCttcactcatggttctataga	6	12	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74450995	G	G	74450995	3	3	24	1	0	0	0	0	1	0	0	0	13198	797	28	4	568	4	RASSF6	4	74450995	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	97497	74450995	116703281	668	39662											
C4orf22	255119	broad.mit.edu	37	chr4	81307719	81307719	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttccttctgggggccgaGacgacagcggtgatctttga	13	10	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81307719	T	T	81307719	1	4	24	0	1	0	0	0	0	0	0	0	2278	957	33	3		3	C4orf22	4	81307719	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	6856724	81307719	109846557	669	39663											
RASGEF1B	153020	broad.mit.edu	37	chr4	82348914	82348914	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagcagcaggcaggcagctCccatgtgttaaactctgcct	11	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82348914	A	A	82348914	1	1	24	0	1	0	0	0	0	0	0	0	13178	870	30	3		3	RASGEF1B	4	82348914	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1041195	82348914	108805362	670	39664											
WDFY3	23001	broad.mit.edu	37	chr4	85716011	85716011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaaaaaaaactcataagCagaaagcaaatattacttac	4	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85716011	A	A	85716011	1	1	24	0	1	0	0	0	0	0	0	0	17397	725	25	3		3	WDFY3	4	85716011	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3367097	85716011	105438265	671	39665											
IBSP	3381	broad.mit.edu	37	chr4	88731761	88731761	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaatatttttaacaggagActtcaaatgaaggagaaaac	8	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88731761	G	G	88731761	3	3	24	1	0	0	0	0	1	0	0	0	7545	275	10	5	268	5	IBSP	4	88731761	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	3015750	88731761	102422515	672	39666											
SPP1	6696	broad.mit.edu	37	chr4	88901610	88901610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctcattttcaatcagaGgcccatcatgccttgaagag	8	10	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88901610	T	T	88901610	1	4	24	0	1	0	0	0	0	0	0	0	15204	1015	35	2		2	SPP1	4	88901610	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	169849	88901610	102252666	673	39667											
HERC6	55008	broad.mit.edu	37	chr4	89304405	89304405	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattggaaaccctaattgttGatctcgtgagctgcgggaag	12	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89304405	T	T	89304405	3	4	24	1	0	0	0	0	1	0	0	0	7129	1290	45	3	35	3	HERC6	4	89304405	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	402795	89304405	101849871	674	39668											
MMRN1	22915	broad.mit.edu	37	chr4	90872784	90872784	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagctgtagtcggcatccGtgccaaaatgggggcacgtg	14	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90872784	T	T	90872784	2	4	24	1	0	0	0	0	0	0	0	1	9764	1132	40	3		3	MMRN1	4	90872784	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1568379	90872784	100281492	675	39669											
GRID2	2895	broad.mit.edu	37	chr4	94344030	94344030	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaactacctgggttttaacTacgaaatttacgtagcaccg	7	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94344030	A	A	94344030	3	1	24	1	0	0	0	0	1	0	0	0	6838	1522	53	5	1494	5	GRID2	4	94344030	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	3471246	94344030	96810246	676	39670											
C4orf37	285555	broad.mit.edu	37	chr4	98946952	98946952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcattgatggtccgccGggtgcctttacctgctattt	11	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98946952	T	T	98946952	1	4	24	0	1	0	0	0	0	0	0	0	2290	1131	39	1		1	C4orf37	4	98946952	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4602922	98946952	92207324	677	39671											
C4orf37	285555	broad.mit.edu	37	chr4	99030525	99030525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcatgaaacaatgtttgGctttacctaagtctaaatct	6	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99030525	T	T	99030525	1	4	24	0	1	0	0	0	0	0	0	0	2290	1218	42	3		3	C4orf37	4	99030525	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	83573	99030525	92123751	678	39672											
ADH7	131	broad.mit.edu	37	chr4	100340266	100340266	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagttcatgtggcaggatgCcagggcatcaatctgagttt	12	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100340266	G	G	100340266	3	3	24	1	0	0	0	0	1	0	0	0	313	739	26	4	298	4	ADH7	4	100340266	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1309741	100340266	90814010	679	39673											
ADH7	131	broad.mit.edu	37	chr4	100349701	100349701	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctacaatcccagttgcCtcatgtcccacaatcactgg	5	16	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100349701	T	T	100349701	2	4	24	1	0	0	0	0	0	0	0	1	313	680	24	4		4	ADH7	4	100349701	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	9435	100349701	90804575	680	39674											
EMCN	51705	broad.mit.edu	37	chr4	101331438	101331438	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaaattgggaaacttaCgtaattattgcctaggtgtg	11	4	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101331438	T	T	101331438	5	4	24	1	0	0	0	0	0	0	1	0	5128	550	19	4		4	EMCN	4	101331438	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	981737	101331438	89822838	681	39675											
NFKB1	4790	broad.mit.edu	37	chr4	103531829	103531829	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagttgtgcctggaaccacGcctctagatatggccaccag	12	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103531829	A	A	103531829	2	1	24	1	0	0	0	0	0	0	0	1	10470	1074	38	4		4	NFKB1	4	103531829	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2200391	103531829	87622447	682	39676											
MANBA	4126	broad.mit.edu	37	chr4	103650920	103650920	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagctctggaacatgttgtCcatgttgctctgagccatct	10	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103650920	T	T	103650920	1	4	24	0	1	0	0	0	0	0	0	0	9311	870	30	4		4	MANBA	4	103650920	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	119091	103650920	87503356	683	39677											
NHEDC2	133308	broad.mit.edu	37	chr4	103978934	103978934	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatatagtttactctggataGaacaggaaacatttagcact	7	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103978934	T	T	103978934	1	4	24	0	1	0	0	0	0	0	0	0	10496	957	33	3		3	NHEDC2	4	103978934	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	328014	103978934	87175342	684	39678											
BDH2	56898	broad.mit.edu	37	chr4	104003908	104003908	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cattaactactcttttccctCcttccaagcccctggcaact	3	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104003908	T	T	104003908	1	4	24	0	1	0	0	0	0	0	0	0	1396	870	30	4		4	BDH2	4	104003908	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	24974	104003908	87150368	685	39679											
AGXT2L1	64850	broad.mit.edu	37	chr4	109681047	109681047	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggcagctttgaccactcCtgggtgacagtgtcccacta	11	13	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109681047	A	A	109681047	4	1	24	1	0	0	0	0	0	1	0	0	406	695	24	2	1350	2	AGXT2L1	4	109681047	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5677139	109681047	81473229	686	39680											
COL25A1	84570	broad.mit.edu	37	chr4	109859044	109859044	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtaacgctgtaagtatttAaaaaaaaacccttcaatcat	4	7	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109859044	T	T	109859044	1	4	24	0	1	0	0	0	0	0	0	0	3716	377	13	5		5	COL25A1	4	109859044	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	177997	109859044	81295232	687	39681											
CASP6	839	broad.mit.edu	37	chr4	110610629	110610629	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcaccagtgtgaggagttCtgtgaactctaaggaggagc	14	7	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110610629	T	T	110610629	3	4	24	1	0	0	0	0	1	0	0	0	2701	922	32	4	146	4	CASP6	4	110610629	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	751585	110610629	80543647	688	39682											
CFI	3426	broad.mit.edu	37	chr4	110681705	110681705	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacacagttcatcactttggTctccacaatcattgatacca	4	12	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110681705	A	A	110681705	3	1	24	1	0	0	0	0	1	0	0	0	3319	1667	58	5	1041	5	CFI	4	110681705	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	71076	110681705	80472571	689	39683											
C4orf21	55345	broad.mit.edu	37	chr4	113460895	113460895	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attctttattttacagaggtCccaatattatcatgtcagtt	5	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113460895	A	A	113460895	1	1	24	0	1	0	0	0	0	0	0	0	2277	870	30	3		3	C4orf21	4	113460895	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2779190	113460895	77693381	690	39684											
ANK2	287	broad.mit.edu	37	chr4	113748371	113748371	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaatttcttgaaaagctgGatcaattggagaagcagaga	10	5	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113748371	T	T	113748371	1	4	24	0	1	0	0	0	0	0	0	0	621	1189	41	3		3	ANK2	4	113748371	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	287476	113748371	77405905	691	39685											
ANK2	287	broad.mit.edu	37	chr4	114238831	114238831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccctgctactgctgttgGtatatgccatggcctcctgc	9	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114238831	T	T	114238831	1	4	24	0	1	0	0	0	0	0	0	0	621	1276	44	3		3	ANK2	4	114238831	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	490460	114238831	76915445	692	39686											
ANK2	287	broad.mit.edu	37	chr4	114271284	114271284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctatagctatggtgtcacCcaacatgtataattatgaat	6	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114271284	A	A	114271284	1	1	24	0	1	0	0	0	0	0	0	0	621	638	22	2		2	ANK2	4	114271284	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	32453	114271284	76882992	693	39687											
NDST3	9348	broad.mit.edu	37	chr4	119026356	119026356	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacactgtcctacattccctAtgttcctccccagcatttta	3	16	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119026356	G	G	119026356	1	3	24	0	1	0	0	0	0	0	0	0	10352	464	16	5		5	NDST3	4	119026356	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	4755072	119026356	72127920	694	39688											
TRPC3	7222	broad.mit.edu	37	chr4	122835848	122835848	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcagggtaaaactgataaGattcttaagcatgaagcttt	8	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122835848	T	T	122835848	1	4	24	0	1	0	0	0	0	0	0	0	16704	957	33	3		3	TRPC3	4	122835848	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3809492	122835848	68318428	695	39689											
KIAA1109	84162	broad.mit.edu	37	chr4	123264729	123264729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagggaaacaaaaaactGctgtttctggcctcacacct	9	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123264729	T	T	123264729	3	4	24	1	0	0	0	0	1	0	0	0	8278	1319	46	3	12799	3	KIAA1109	4	123264729	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	428881	123264729	67889547	696	39690											
IL2	3558	broad.mit.edu	37	chr4	123377449	123377449	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaggaaatatacttacAttaattccattcaaaatcat	3	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123377449	T	T	123377449	3	4	24	1	0	0	0	0	1	0	0	0	7736	231	8	5	330	5	IL2	4	123377449	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	112720	123377449	67776827	697	39691											
SPRY1	10252	broad.mit.edu	37	chr4	124323229	124323229	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggacccagcccaagcaactGattgtggatgacttgaaggg	13	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124323229	T	T	124323229	2	4	24	1	0	0	0	0	0	0	0	1	15223	1277	45	3		3	SPRY1	4	124323229	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	945780	124323229	66831047	698	39692											
FAT4	79633	broad.mit.edu	37	chr4	126320037	126320037	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacattggagatggctctaaGattatgcagctgacagccat	10	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126320037	A	A	126320037	2	1	24	1	0	0	0	0	0	0	0	1	5749	933	33	4		4	FAT4	4	126320037	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1996808	126320037	64834239	699	39693											
FAT4	79633	broad.mit.edu	37	chr4	126402752	126402752	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagtcagaatgagaagcgGgaatatttgttaaggcaaag	13	3	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126402752	T	T	126402752	2	4	24	1	0	0	0	0	0	0	0	1	5749	1219	43	2		2	FAT4	4	126402752	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	82715	126402752	64751524	700	39694											
PCDH10	57575	broad.mit.edu	37	chr4	134071523	134071523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggggtgctgtacgtgaaCgagaaaatagaccgcgaaca	13	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134071523	A	A	134071523	3	1	24	1	0	0	0	0	1	0	0	0	11601	535	19	3	230	3	PCDH10	4	134071523	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7668771	134071523	57082753	701	39695											
PCDH10	57575	broad.mit.edu	37	chr4	134075490	134075490	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagcgagcagagctcagctAtctagttgacagacctcgcc	10	14	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134075490	T	T	134075490	3	4	24	1	0	0	0	0	1	0	0	0	11601	449	16	5	2726	5	PCDH10	4	134075490	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	3967	134075490	57078786	702	39696											
ELF2	1998	broad.mit.edu	37	chr4	140035961	140035961	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagacccctgggccagggGcacgaggagccctgctcatg	15	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140035961	A	A	140035961	1	1	24	0	1	0	0	0	0	0	0	0	5096	1218	42	4		4	ELF2	4	140035961	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5960471	140035961	51118315	703	39697											
INPP4B	8821	broad.mit.edu	37	chr4	143066974	143066974	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactcagtaaatgattgggAaaaaaaattatttcttacct	5	5	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143066974	G	G	143066974	1	3	24	0	1	0	0	0	0	0	0	0	7823	261	9	5		5	INPP4B	4	143066974	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	3031013	143066974	48087302	704	39698											
TRIM2	23321	broad.mit.edu	37	chr4	154216897	154216897	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgggagcgtggcagacgggGagatcctggacaacaagaac	16	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154216897	T	T	154216897	4	4	24	1	0	0	0	0	0	1	0	0	16618	1175	41	3	1241	3	TRIM2	4	154216897	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	11149923	154216897	36937379	705	39699											
GRIA2	2891	broad.mit.edu	37	chr4	158256804	158256804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatattttaatcagctaaaGcaaagtcttttcatatagga	6	5	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158256804	T	T	158256804	1	4	24	0	1	0	0	0	0	0	0	0	6834	986	34	3		3	GRIA2	4	158256804	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4039907	158256804	32897472	706	39700											
TKTL2	84076	broad.mit.edu	37	chr4	164394640	164394640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacccaagcagcatagaGgataggagcagcatgtcccc	10	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164394640	T	T	164394640	3	4	24	1	0	0	0	0	1	0	0	0	16059	1000	35	2	1637	2	TKTL2	4	164394640	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	6137836	164394640	26759636	707	39701											
C4orf43	55319	broad.mit.edu	37	chr4	164435322	164435322	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattgaaaggtaaacactggGcatattatgagcaaagggtc	11	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164435322	C	C	164435322	1	2	24	0	1	0	0	0	0	0	0	0	2294	1218	42	4		4	C4orf43	4	164435322	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	40682	164435322	26718954	708	39702											
C4orf43	55319	broad.mit.edu	37	chr4	164436533	164436533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtatcagggacaggcaggGgaggcggcactgttcccggg	18	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164436533	A	A	164436533	3	1	24	1	0	0	0	0	1	0	0	0	2294	1232	43	4	326	4	C4orf43	4	164436533	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1211	164436533	26717743	709	39703											
KLHL2	11275	broad.mit.edu	37	chr4	166231976	166231976	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttatggaataaattgtgGcaacattagggcacatgtga	11	4	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166231976	A	A	166231976	1	1	24	0	1	0	0	0	0	0	0	0	8445	1218	42	4		4	KLHL2	4	166231976	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1795443	166231976	24922300	710	39704											
DDX60L	91351	broad.mit.edu	37	chr4	169337907	169337907	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaataatgacaaggaggagCtcccaaaattttgctccaac	8	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169337907	T	T	169337907	2	4	24	1	0	0	0	0	0	0	0	1	4412	796	28	4		4	DDX60L	4	169337907	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	3105931	169337907	21816369	711	39705											
FBXO8	26269	broad.mit.edu	37	chr4	175180760	175180760	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcatgttcaatgactttTtgttttccctgctagtttat	6	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175180760	C	C	175180760	1	2	24	0	1	0	0	0	0	0	0	0	5818	1856	64	5		5	FBXO8	4	175180760	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	5842853	175180760	15973516	712	39706											
GPM6A	2823	broad.mit.edu	37	chr4	176561209	176561209	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaaactttagagatagtTtatcatctctacaagcaaat	4	8	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176561209	G	G	176561209	1	3	24	0	1	0	0	0	0	0	0	0	6680	1856	64	5		5	GPM6A	4	176561209	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1380449	176561209	14593067	713	39707											
WDR17	116966	broad.mit.edu	37	chr4	177056385	177056385	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacagcagtgtacacatccCcgggtaatgaaggtgttatt	10	8	0	1	rs113488450		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177056385	T	T	177056385	3	4	24	1	0	0	0	0	1	0	0	0	17404	623	22	4	1327	4	WDR17	4	177056385	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	495176	177056385	14097891	714	39708											
VEGFC	7424	broad.mit.edu	37	chr4	177604990	177604991	+	3'UTR	INS	-	A	A													ctttgttagcatggacccacINSaagggtctctctgttcacag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177604991	A	A	177604990	6	5	24	0	1	1	1	0	0	0	0	0	17279	493	17	0		0	VEGFC	4	177604990	3'UTR	INS	-	TCGA-05-4427-01A-21D-1855-08	548605	177604990	13549286	715	39709											
VEGFC	7424	broad.mit.edu	37	chr4	177632898	177632898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaaaagagtgagattagCtctatataagtagctgccta	9	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177632898	A	A	177632898	1	1	24	0	1	0	0	0	0	0	0	0	17279	812	28	3		3	VEGFC	4	177632898	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	27908	177632898	13521378	716	39710											
NEIL3	55247	broad.mit.edu	37	chr4	178272695	178272695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcttgcttgacctcaaGgcctattggtaagactgaat	10	8	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178272695	T	T	178272695	3	4	24	1	0	0	0	0	1	0	0	0	10415	1000	35	2	1057	2	NEIL3	4	178272695	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	639797	178272695	12881581	717	39711											
ODZ3	55714	broad.mit.edu	37	chr4	183652154	183652154	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgtgatggataccctagtCatgaagaaagaagagaatga	11	4	1	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183652154	A	A	183652154	2	1	24	1	0	0	0	0	0	0	0	1	10931	813	29	3		3	ODZ3	4	183652154	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	5379459	183652154	7502122	718	39712											
CLDN22	53842	broad.mit.edu	37	chr4	184240784	184240784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccactgcgtagtggccCgaagctaggggagcgtggct	17	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184240784	A	A	184240784	2	1	24	1	0	0	0	0	0	0	0	1	3514	639	23	1		1	CLDN22	4	184240784	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	588630	184240784	6913492	719	39713											
ACSL1	2180	broad.mit.edu	37	chr4	185678669	185678669	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctgtcaaactactccAttatttattcctcatgtatg	3	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185678669	G	G	185678669	1	3	24	0	1	0	0	0	0	0	0	0	177	232	8	5		5	ACSL1	4	185678669	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1437885	185678669	5475607	720	39714											
KLKB1	3818	broad.mit.edu	37	chr4	187177114	187177114	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctatatccataactttatttGaccaaactctaatttaaaaa	1	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187177114	T	T	187177114	1	4	24	0	1	0	0	0	0	0	0	0	8483	1305	45	3		3	KLKB1	4	187177114	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1498445	187177114	3977162	721	39715											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903771	190903771	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcggcctcagtgaattccatCtcatccatgccctcgcccgt	7	17	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190903771	G	G	190903771	3	3	24	1	0	0	0	0	1	0	0	0	16885	912	32	4	95	4	TUBB4Q	4	190903771	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3726657	190903771	250505	722	39716											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903786	190903786	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatctcatccatgccctcGcccgtgtaccagtggaggaa	9	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190903786	T	T	190903786	2	4	24	1	0	0	0	0	0	0	0	1	16885	1074	38	3		3	TUBB4Q	4	190903786	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	15	190903786	250490	723	39717											
PLEKHG4B	153478	broad.mit.edu	37	chr5	143241	143241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcgggccttccgatgtGcctgcccggcagccacaccc	11	20	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143241	T	T	143241	2	4	24	1	0	0	0	0	0	0	0	1	12167	1306	46	3		3	PLEKHG4B	5	143241	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08		143241	180772019	724	39718											
PLEKHG4B	153478	broad.mit.edu	37	chr5	162015	162015	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggctgagtgcagggagGgagagctggccaggtggacc	20	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162015	T	T	162015	4	4	24	1	0	0	0	0	0	1	0	0	12167	1233	43	2	1575	2	PLEKHG4B	5	162015	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	18774	162015	180753245	725	39719											
LPCAT1	79888	broad.mit.edu	37	chr5	1474090	1474090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcgtcgaacagtgaaaaCatgtcttccagcaagtcaga	8	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1474090	T	T	1474090	3	4	24	1	0	0	0	0	1	0	0	0	8997	478	17	4	459	4	LPCAT1	5	1474090	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1312075	1474090	179441170	726	39720											
ADAMTS16	170690	broad.mit.edu	37	chr5	5146670	5146670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcatagatgttcttctaGtactgcagcgcagattaagc	9	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5146670	T	T	5146670	1	4	24	0	1	0	0	0	0	0	0	0	261	1044	36	3		3	ADAMTS16	5	5146670	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3672580	5146670	175768590	727	39721											
ADAMTS16	170690	broad.mit.edu	37	chr5	5303424	5303424	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagtcggacgtgtggcGggggtgcccagagccgcccc	17	15	0	1	rs34586473	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5303424	C	C	5303424	3	2	24	1	0	0	0	0	1	0	0	0	261	1116	39	4	2907	4	ADAMTS16	5	5303424	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	156754	5303424	175611836	728	39722											
NSUN2	54888	broad.mit.edu	37	chr5	6604576	6604576	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcactctgggagagctctaTaacctgtgagggtcaagtgg	14	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6604576	A	A	6604576	1	1	24	0	1	0	0	0	0	0	0	0	10773	1421	49	5		5	NSUN2	5	6604576	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1301152	6604576	174310684	729	39723											
ADCY2	108	broad.mit.edu	37	chr5	7717473	7717473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaccattcattcatttcaCttcagttgtccctcagaata	5	11	5	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7717473	A	A	7717473	1	1	24	0	1	0	0	0	0	0	0	0	294	580	20	3		3	ADCY2	5	7717473	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1112897	7717473	173197787	730	39724											
ADCY2	108	broad.mit.edu	37	chr5	7743902	7743902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcttctttgaaaagtatGctcatttcatgaaagctgat	9	7	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7743902	T	T	7743902	1	4	24	0	1	0	0	0	0	0	0	0	294	1334	46	3		3	ADCY2	5	7743902	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	26429	7743902	173171358	731	39725											
ADCY2	108	broad.mit.edu	37	chr5	7784472	7784472	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttgtctgtctgtttttTaatagaccaggcatttggaa	9	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7784472	A	A	7784472	1	1	24	0	1	0	0	0	0	0	0	0	294	1769	61	5		5	ADCY2	5	7784472	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	40570	7784472	173130788	732	39726											
FASTKD3	79072	broad.mit.edu	37	chr5	7862791	7862791	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcttgactcaacggctcTgctgctaaccccaacttgcc	7	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7862791	C	C	7862791	1	2	24	0	1	0	0	0	0	0	0	0	5744	1595	55	5		5	FASTKD3	5	7862791	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	78319	7862791	173052469	733	39727											
CMBL	134147	broad.mit.edu	37	chr5	10286381	10286381	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacattattgggggttgtgtTacactggatggggaggcttg	16	5	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10286381	A	A	10286381	1	1	24	0	1	0	0	0	0	0	0	0	3608	1769	61	5		5	CMBL	5	10286381	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2423590	10286381	170628879	734	39728											
CTNND2	1501	broad.mit.edu	37	chr5	11117571	11117571	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacaaccaaccttgctatcGatctcactgctccccagcgc	6	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11117571	T	T	11117571	2	4	24	1	0	0	0	0	0	0	0	1	4054	1048	37	3		3	CTNND2	5	11117571	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	831190	11117571	169797689	735	39729											
ANKH	56172	broad.mit.edu	37	chr5	14711380	14711380	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgtctgtcatggcagagtCttccccctccgtggccgact	10	15	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14711380	G	G	14711380	3	3	24	1	0	0	0	0	1	0	0	0	627	913	32	4	77	4	ANKH	5	14711380	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3593809	14711380	166203880	736	39730											
MYO10	4651	broad.mit.edu	37	chr5	16685846	16685846	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacacagtgctcccgtaCcacagcattctgtgggtttg	9	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16685846	A	A	16685846	5	1	24	1	0	0	0	0	0	0	1	0	10156	521	18	3	2237	3	MYO10	5	16685846	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	1974466	16685846	164229414	737	39731											
CDH18	1016	broad.mit.edu	37	chr5	19473540	19473540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgctagggtctaggtctGcttctgccagtctttgctta	11	10	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473540	T	T	19473540	3	4	24	1	0	0	0	0	1	0	0	0	3133	1319	46	3	208	3	CDH18	5	19473540	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2787694	19473540	161441720	738	39732											
CDH18	1016	broad.mit.edu	37	chr5	19520996	19520996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggttccatatgccataGctggacttttggcaaacgac	9	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19520996	T	T	19520996	1	4	24	0	1	0	0	0	0	0	0	0	3133	986	34	3		3	CDH18	5	19520996	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	47456	19520996	161394264	739	39733											
CDH12	1010	broad.mit.edu	37	chr5	21882777	21882777	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcactcgagcttatgccAaagatgtaaaatttggtgca	8	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21882777	G	G	21882777	1	3	24	0	1	0	0	0	0	0	0	0	3128	145	5	5		5	CDH12	5	21882777	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2361781	21882777	159032483	740	39734											
CDH12	1010	broad.mit.edu	37	chr5	21884278	21884278	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccaacaaagcttgtgagaActgctttattggatgctgct	9	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21884278	C	C	21884278	1	2	24	0	1	0	0	0	0	0	0	0	3128	58	2	5		5	CDH12	5	21884278	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1501	21884278	159030982	741	39735											
PRDM9	56979	broad.mit.edu	37	chr5	23517986	23517986	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgatttctcatcaccttTtagtcaaacctccttggatg	5	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23517986	G	G	23517986	1	3	24	0	1	0	0	0	0	0	0	0	12569	1856	64	5		5	PRDM9	5	23517986	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1633708	23517986	157397274	742	39736											
CDH10	1008	broad.mit.edu	37	chr5	24537756	24537756	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagatatatttgagtgatcCatctcctttatcttggtctg	7	7	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24537756	A	A	24537756	4	1	24	1	0	0	0	0	0	1	0	0	3126	603	21	2	2147	2	CDH10	5	24537756	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1019770	24537756	156377504	743	39737											
CDH9	1007	broad.mit.edu	37	chr5	26890739	26890739	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagttctactctttcttaaAgctataggtaatttccacaa	4	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26890739	T	T	26890739	1	4	24	0	1	0	0	0	0	0	0	0	3147	87	3	5		5	CDH9	5	26890739	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2352983	26890739	154024521	744	39738											
CDH9	1007	broad.mit.edu	37	chr5	26902551	26902551	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagtgagattattatatttCtaaaaacataataaatgttt	4	2	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26902551	G	G	26902551	1	3	24	0	1	0	0	0	0	0	0	0	3147	928	32	4		4	CDH9	5	26902551	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	11812	26902551	154012709	745	39739											
CDH9	1007	broad.mit.edu	37	chr5	26988225	26988225	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcttaccttgcctacataTtgtgtgtcagtacctgtgta	7	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26988225	C	C	26988225	2	2	24	1	0	0	0	0	0	0	0	1	3147	1490	52	5		5	CDH9	5	26988225	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	85674	26988225	153927035	746	39740											
CDH6	1004	broad.mit.edu	37	chr5	31294153	31294153	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatctcttcattattaatGaaaacacaggcgacatacag	7	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31294153	T	T	31294153	4	4	24	1	0	0	0	0	0	1	0	0	3144	1291	45	3	319	3	CDH6	5	31294153	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4305928	31294153	149621107	747	39741											
CDH6	1004	broad.mit.edu	37	chr5	31322999	31322999	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatttccaaagaggacatcAgagataacattgtcagttac	7	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31322999	T	T	31322999	4	4	24	1	0	0	0	0	0	1	0	0	3144	180	7	5	1999	5	CDH6	5	31322999	Nonsense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	28846	31322999	149592261	748	39742											
TARS	6897	broad.mit.edu	37	chr5	33457487	33457488	+	Missense_Mutation	DNP	AG	TT	TT													caagaggaagctaaaaaccgAgatcataggaaaattggcag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	33457488	TT	TT	33457487	3	4	24	1	0	0	0	0	1	0	0	0	15678	291	11	5	997	5	TARS	5	33457487	Missense_Mutation	DNP	AG	TCGA-05-4427-01A-21D-1855-08	2134488	33457487	147457773	749	39743											
SLC45A2	51151	broad.mit.edu	37	chr5	33984626	33984626	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggctccacagagtcaaaGgggccatcatcagctaggga	14	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33984626	T	T	33984626	2	4	24	1	0	0	0	0	0	0	0	1	14755	987	35	2		2	SLC45A2	5	33984626	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	527139	33984626	146930634	750	39744											
AMACR	23600	broad.mit.edu	37	chr5	33989210	33989210	+	Frame_Shift_Del	DEL	T	-	-													cctggaagttagagactagcTtttaccttattactttcaat							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33989210	-	-	33989210	7	5	24	1	0	1	0	1	0	0	0	0	562	1606	56	0	73	0	AMACR	5	33989210	Frame_Shift_Del	DEL	T	TCGA-05-4427-01A-21D-1855-08	4584	33989210	146926050	751	39745											
SPEF2	79925	broad.mit.edu	37	chr5	35697879	35697879	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgctgcttgttgacatcAtagtaaatgctattaagtat	8	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35697879	G	G	35697879	3	3	24	1	0	0	0	0	1	0	0	0	15153	217	8	5	2204	5	SPEF2	5	35697879	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1708669	35697879	145217381	752	39746											
SPEF2	79925	broad.mit.edu	37	chr5	35800162	35800162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcttgccacccagacacCgtggaaggagtctacagggc	12	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35800162	A	A	35800162	2	1	24	1	0	0	0	0	0	0	0	1	15153	639	23	1		1	SPEF2	5	35800162	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	102283	35800162	145115098	753	39747											
UGT3A1	133688	broad.mit.edu	37	chr5	35988535	35988535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaagaatataaaaattaGtttttaaaaaagatacctgg	6	2	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35988535	T	T	35988535	1	4	24	0	1	0	0	0	0	0	0	0	17089	1044	36	3		3	UGT3A1	5	35988535	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	188373	35988535	144926725	754	39748											
LMBRD2	92255	broad.mit.edu	37	chr5	36117869	36117869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattatatgttttttctgCcagctgtatgaagaccgcaa	7	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36117869	A	A	36117869	3	1	24	1	0	0	0	0	1	0	0	0	8917	739	26	3	853	3	LMBRD2	5	36117869	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	129334	36117869	144797391	755	39749											
NUP155	9631	broad.mit.edu	37	chr5	37326090	37326090	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaaaaaaaaagttttaAtgattgtgctgtaaatgaat	8	2	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37326090	G	G	37326090	1	3	24	0	1	0	0	0	0	0	0	0	10851	116	4	5		5	NUP155	5	37326090	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1208221	37326090	143589170	756	39750											
DAB2	1601	broad.mit.edu	37	chr5	39377209	39377209	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggagttgaggctgcaaaGggtgaaggctggttccaacc	18	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39377209	A	A	39377209	2	1	24	1	0	0	0	0	0	0	0	1	4251	987	35	4		4	DAB2	5	39377209	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2051119	39377209	141538051	757	39751											
CARD6	84674	broad.mit.edu	37	chr5	40843682	40843682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttatgatgacccagagCacgttggatatgatggtgaa	13	5	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40843682	A	A	40843682	3	1	24	1	0	0	0	0	1	0	0	0	2676	710	25	3	718	3	CARD6	5	40843682	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1466473	40843682	140071578	758	39752											
HEATR7B2	133558	broad.mit.edu	37	chr5	41042216	41042216	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctttgatcccccagttggTtgggagcagtcagaaactcc	11	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41042216	C	C	41042216	3	2	24	1	0	0	0	0	1	0	0	0	7102	1725	60	5	2922	5	HEATR7B2	5	41042216	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	198534	41042216	139873044	759	39753											
C6	729	broad.mit.edu	37	chr5	41201792	41201792	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcacaaaagttttcctgGtagtacttatctactactat	5	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41201792	T	T	41201792	4	4	24	1	0	0	0	0	0	1	0	0	2338	1256	44	3	2700	3	C6	5	41201792	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	159576	41201792	139713468	760	39754											
GHR	2690	broad.mit.edu	37	chr5	42467211	42467211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtatgagctacatgtgaaGgccttcccacattcattaca	8	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42467211	A	A	42467211	1	1	24	0	1	0	0	0	0	0	0	0	6435	1015	35	4		4	GHR	5	42467211	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1265419	42467211	138448049	761	39755											
GHR	2690	broad.mit.edu	37	chr5	42688847	42688847	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacccaggaaaaatgcttttCtggaagacatcggcattacc	9	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42688847	T	T	42688847	1	4	24	0	1	0	0	0	0	0	0	0	6435	928	32	4		4	GHR	5	42688847	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	221636	42688847	138226413	762	39756											
HCN1	348980	broad.mit.edu	37	chr5	45267278	45267278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcgttgaaattgtccaCggaaagtgagtaaagacgac	11	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45267278	A	A	45267278	3	1	24	1	0	0	0	0	1	0	0	0	7062	536	19	3	984	3	HCN1	5	45267278	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2578431	45267278	135647982	763	39757											
ITGA2	3673	broad.mit.edu	37	chr5	52370967	52370967	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcagtttccaagccttaaGgtaaaacataatgaagtcat	6	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52370967	A	A	52370967	3	1	24	1	0	0	0	0	1	0	0	0	7945	1014	35	4	2827	4	ITGA2	5	52370967	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	7103689	52370967	128544293	764	39758											
SKIV2L2	23517	broad.mit.edu	37	chr5	54645370	54645370	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggtatcactaactcattttGatatttctgtacccttgaat	5	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54645370	C	C	54645370	1	2	24	0	1	0	0	0	0	0	0	0	14473	1305	45	4		4	SKIV2L2	5	54645370	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2274403	54645370	126269890	765	39759											
SFRS12	140890	broad.mit.edu	37	chr5	65466074	65466074	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagggataatattttaattGgcttcatttgttaaaaatct	6	3	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65466074	A	A	65466074	1	1	24	0	1	0	0	0	0	0	0	0	14280	1363	47	4		4	SFRS12	5	65466074	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	10820704	65466074	115449186	766	39760											
MAST4	375449	broad.mit.edu	37	chr5	66462834	66462834	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggtacggcagaggcgGgggaaagagagtttgcgtag	19	4	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66462834	T	T	66462834	2	4	24	1	0	0	0	0	0	0	0	1	9419	1219	43	2		2	MAST4	5	66462834	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	996760	66462834	114452426	767	39761											
BDP1	55814	broad.mit.edu	37	chr5	70837174	70837174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgctgccacacaaatgaaGcaaactttaataatacagaa	5	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70837174	T	T	70837174	1	4	24	0	1	0	0	0	0	0	0	0	1400	986	34	3		3	BDP1	5	70837174	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4374340	70837174	110078086	768	39762											
MAP1B	4131	broad.mit.edu	37	chr5	71495211	71495211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagctactcttatgaaaCcactgagaaaattaccagtt	5	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71495211	A	A	71495211	3	1	24	1	0	0	0	0	1	0	0	0	9320	507	18	3	6047	3	MAP1B	5	71495211	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	658037	71495211	109420049	769	39763											
F2RL2	2151	broad.mit.edu	37	chr5	75914019	75914019	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacatgttgccatagaagatGactgtggtggcccggcacag	13	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75914019	A	A	75914019	2	1	24	1	0	0	0	0	0	0	0	1	5388	1277	45	4		4	F2RL2	5	75914019	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	4418808	75914019	105001241	770	39764											
IQGAP2	10788	broad.mit.edu	37	chr5	75954415	75954415	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgaccaagatcagggccAatcaacagctggaaaaagac	10	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75954415	G	G	75954415	3	3	24	1	0	0	0	0	1	0	0	0	7885	130	5	5	2534	5	IQGAP2	5	75954415	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	40396	75954415	104960845	771	39765											
CKMT2	1160	broad.mit.edu	37	chr5	80561794	80561794	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcttaactatggaaagattGagagaaacccttatatctct	6	7	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80561794	A	A	80561794	1	1	24	0	1	0	0	0	0	0	0	0	3482	1305	45	4		4	CKMT2	5	80561794	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4607379	80561794	100353466	772	39766											
TMEM167A	153339	broad.mit.edu	37	chr5	82373273	82373273	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcaccgcctaccaagacGggcggttaagacactaggat	12	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82373273	T	T	82373273	5	4	24	1	0	0	0	0	0	0	1	0	16204	1131	39	1		1	TMEM167A	5	82373273	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	1811479	82373273	98541987	773	39767											
GPR98	84059	broad.mit.edu	37	chr5	89924545	89924545	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatgttggcaacaattcctCttactgtggttgatgatgat	10	6	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89924545	T	T	89924545	3	4	24	1	0	0	0	0	1	0	0	0	6787	913	32	4	1435	4	GPR98	5	89924545	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7551272	89924545	90990715	774	39768											
GPR98	84059	broad.mit.edu	37	chr5	89938559	89938559	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaattttctcctgcttccAgaggaccctatgttataaaa	6	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89938559	G	G	89938559	3	3	24	1	0	0	0	0	1	0	0	0	6787	180	7	5	2393	5	GPR98	5	89938559	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	14014	89938559	90976701	775	39769											
SLCO6A1	133482	broad.mit.edu	37	chr5	101755679	101755679	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaatgtggaaacaatgacAcctcccagaagctggccaag	9	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101755679	T	T	101755679	2	4	24	1	0	0	0	0	0	0	0	1	14846	146	6	5		5	SLCO6A1	5	101755679	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	11817120	101755679	79159581	776	39770											
FER	2241	broad.mit.edu	37	chr5	108523025	108523025	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggatgttttgtttccatAtaactacaacataaggtacc	6	7	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108523025	G	G	108523025	1	3	24	0	1	0	0	0	0	0	0	0	5870	464	16	5		5	FER	5	108523025	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	6767346	108523025	72392235	777	39771											
KCNN2	3781	broad.mit.edu	37	chr5	113740082	113740082	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaaatctgcactaacaCttgtggaccattcatgccat	5	10	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113740082	G	G	113740082	1	3	24	0	1	0	0	0	0	0	0	0	8149	580	20	4		4	KCNN2	5	113740082	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	5217057	113740082	67175178	778	39772											
GRAMD3	65983	broad.mit.edu	37	chr5	125805302	125805303	+	Intron	DNP	GG	TT	TT													atgctgctgcacttcagcctGggcaacagagcaaaactgtc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	125805303	TT	TT	125805302	1	4	24	0	1	0	0	0	0	0	0	0	6817	1363	47	2		2	GRAMD3	5	125805302	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	12065220	125805302	55109958	779	39773											
MEGF10	84466	broad.mit.edu	37	chr5	126667056	126667056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttattgttatgccactGgattgggacagcatcacctc	9	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126667056	T	T	126667056	3	4	24	1	0	0	0	0	1	0	0	0	9553	1357	47	2	58	2	MEGF10	5	126667056	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	861754	126667056	54248204	780	39774											
MEGF10	84466	broad.mit.edu	37	chr5	126770409	126770409	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtttttatgggcatcgctGcagccagacatgcccacagt	11	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126770409	C	C	126770409	3	2	24	1	0	0	0	0	1	0	0	0	9553	1319	46	4	1925	4	MEGF10	5	126770409	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	103353	126770409	54144851	781	39775											
FBN2	2201	broad.mit.edu	37	chr5	127704739	127704739	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttattatatgcctcacatatCaatacaggattggatttctc	5	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127704739	A	A	127704739	1	1	24	0	1	0	0	0	0	0	0	0	5760	841	29	3		3	FBN2	5	127704739	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	934330	127704739	53210521	782	39776											
SLC27A6	28965	broad.mit.edu	37	chr5	128302151	128302151	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgaaaaagggggacacGgtggctctgctgatgagcaa	14	8	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128302151	T	T	128302151	2	4	24	1	0	0	0	0	0	0	0	1	14644	1103	39	1		1	SLC27A6	5	128302151	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	597412	128302151	52613109	783	39777											
ADAMTS19	171019	broad.mit.edu	37	chr5	128984683	128984683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatgaccaaccagatcacCaccatctttgttaactagat	6	11	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128984683	A	A	128984683	1	1	24	0	1	0	0	0	0	0	0	0	264	609	21	2		2	ADAMTS19	5	128984683	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	682532	128984683	51930577	784	39778											
RAD50	10111	broad.mit.edu	37	chr5	131931411	131931411	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgatttgcagtctaaactgCgacttgctccagataaactc	8	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131931411	G	G	131931411	3	3	24	1	0	0	0	0	1	0	0	0	13092	760	27	4	2166	4	RAD50	5	131931411	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2946728	131931411	48983849	785	39779											
SKP1	6500	broad.mit.edu	37	chr5	133496754	133496754	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggatatcatctgttcgcTtttctttgttctcatcatct	6	10	6	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133496754	C	C	133496754	3	2	24	1	0	0	0	0	1	0	0	0	14474	1609	56	5	291	5	SKP1	5	133496754	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1565343	133496754	47418506	786	39780											
GFRA3	2676	broad.mit.edu	37	chr5	137609997	137609997	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccctcccactgtaccccCggccggtgcgcgctctgaca	9	21	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137609997	T	T	137609997	1	4	24	0	1	0	0	0	0	0	0	0	6413	667	23	4		4	GFRA3	5	137609997	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4113243	137609997	43305263	787	39781											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139839059	139839059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtggttaccagagtgtgGgcatgagggtgggaggagag	21	3	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139839059	T	T	139839059	1	4	24	0	1	0	0	0	0	0	0	0	629	1247	43	2		2	ANKHD1-EIF4EBP3	5	139839059	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2229062	139839059	41076201	788	39782											
PCDHA1	56147	broad.mit.edu	37	chr5	140166920	140166920	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtaaatgataatgctccaGaactggcggtcacttcattg	9	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140166920	T	T	140166920	4	4	24	1	0	0	0	0	0	1	0	0	11613	943	33	3	1047	3	PCDHA1	5	140166920	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	327861	140166920	40748340	789	39783											
PCDHA3	56145	broad.mit.edu	37	chr5	140181571	140181571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtaccctagtggtgacCgttaacgccaccgatttgga	11	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140181571	A	A	140181571	2	1	24	1	0	0	0	0	0	0	0	1	11619	639	23	1		1	PCDHA3	5	140181571	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	14651	140181571	40733689	790	39784											
PCDHA3	56145	broad.mit.edu	37	chr5	140182007	140182007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaattactactcattggtgCtggacagccctctggaccgc	10	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140182007	A	A	140182007	3	1	24	1	0	0	0	0	1	0	0	0	11619	796	28	3	1227	3	PCDHA3	5	140182007	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	436	140182007	40733253	791	39785											
PCDHA4	56144	broad.mit.edu	37	chr5	140188758	140188758	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccgcgctgacggccacGgccactgtgctggtgtcact	14	15	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140188758	T	T	140188758	2	4	24	1	0	0	0	0	0	0	0	1	11620	1103	39	1		1	PCDHA4	5	140188758	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	6751	140188758	40726502	792	39786											
PCDHA11	56138	broad.mit.edu	37	chr5	140250429	140250429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcagttaacaagctagtaCcgcggtcggtgggtgcgggc	17	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140250429	A	A	140250429	3	1	24	1	0	0	0	0	1	0	0	0	11615	507	18	3	1743	3	PCDHA11	5	140250429	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	61671	140250429	40664831	793	39787											
PCDHB2	56133	broad.mit.edu	37	chr5	140474955	140474955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgatggcataatattacCacagctggtgctgaacagag	10	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140474955	A	A	140474955	3	1	24	1	0	0	0	0	1	0	0	0	11636	594	21	2	583	2	PCDHB2	5	140474955	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	224526	140474955	40440305	794	39788											
TAF7	6879	broad.mit.edu	37	chr5	140698507	140698507	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacccagtacaataaagcCaagaattttctaatgctgac	5	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140698507	A	A	140698507	1	1	24	0	1	0	0	0	0	0	0	0	15651	609	21	2		2	TAF7	5	140698507	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	223552	140698507	40216753	795	39789											
PCDHGB1	56104	broad.mit.edu	37	chr5	140729929	140729929	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccagcagatccgatacacGattccagaggagctagccaa	9	13	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140729929	A	A	140729929	2	1	24	1	0	0	0	0	0	0	0	1	11656	1045	37	4		4	PCDHGB1	5	140729929	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	31422	140729929	40185331	796	39790											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730620	140730620	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctgcgggtgatggccacaGaccaggatgagggcattaat	15	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140730620	C	C	140730620	3	2	24	1	0	0	0	0	1	0	0	0	11656	942	33	4	795	4	PCDHGB1	5	140730620	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	691	140730620	40184640	797	39791											
PCDHGB3	56102	broad.mit.edu	37	chr5	140750336	140750336	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaactgtgctgatccaggaTattaacgacaacccaccgac	8	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140750336	A	A	140750336	3	1	24	1	0	0	0	0	1	0	0	0	11658	1403	49	5	377	5	PCDHGB3	5	140750336	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	19716	140750336	40164924	798	39792											
RELL2	285613	broad.mit.edu	37	chr5	141018471	141018471	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccctcttctccaaccttctCttgccctgacctccacctcc	2	22	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141018471	G	G	141018471	1	3	24	0	1	0	0	0	0	0	0	0	13327	928	32	4		4	RELL2	5	141018471	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	268135	141018471	39896789	799	39793											
TCERG1	10915	broad.mit.edu	37	chr5	145826846	145826846	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctccgcctctctcgttggGgattgacgatttttctagcc	10	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145826846	A	A	145826846	1	1	24	0	1	0	0	0	0	0	0	0	15807	1247	43	4		4	TCERG1	5	145826846	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	4808375	145826846	35088414	800	39794											
JAKMIP2	9832	broad.mit.edu	37	chr5	146971353	146971353	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattttttattctttaccaCtgctttgatgtgtatgatct	5	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146971353	T	T	146971353	1	4	24	0	1	0	0	0	0	0	0	0	8011	580	20	4		4	JAKMIP2	5	146971353	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1144507	146971353	33943907	801	39795											
HTR4	3360	broad.mit.edu	37	chr5	147830873	147830873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcatgagaattcaacagGcatgctccaactgcaccgaa	9	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147830873	T	T	147830873	1	4	24	0	1	0	0	0	0	0	0	0	7519	1218	42	3		3	HTR4	5	147830873	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	859520	147830873	33084387	802	39796											
PDE6A	5145	broad.mit.edu	37	chr5	149312181	149312181	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaccctcattcgctgactAatgccttcagtatattccat	7	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149312181	G	G	149312181	1	3	24	0	1	0	0	0	0	0	0	0	11739	377	13	5		5	PDE6A	5	149312181	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1481308	149312181	31603079	803	39797											
CSF1R	1436	broad.mit.edu	37	chr5	149434825	149434825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggggcaaatgcaggctGggccatttggtatccatcct	12	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149434825	T	T	149434825	3	4	24	1	0	0	0	0	1	0	0	0	3966	1357	47	2	301	2	CSF1R	5	149434825	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	122644	149434825	31480435	804	39798											
DCTN4	51164	broad.mit.edu	37	chr5	150138538	150138538	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatagagaacccggtccgaCtgcagcaaggacgccatctt	11	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150138538	T	T	150138538	2	4	24	1	0	0	0	0	0	0	0	1	4342	564	20	4		4	DCTN4	5	150138538	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	703713	150138538	30776722	805	39799											
GLRA1	2741	broad.mit.edu	37	chr5	151271897	151271897	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattgggcctgatcctggcAtcatatccggaggttctccc	10	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151271897	G	G	151271897	2	3	24	1	0	0	0	0	0	0	0	1	6518	214	8	5		5	GLRA1	5	151271897	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	1133359	151271897	29643363	806	39800											
KIF4B	285643	broad.mit.edu	37	chr5	154393713	154393713	+	Frame_Shift_Del	DEL	G	-	-													tctggaaaaacctattcaatGggaggtgcatacactgcgga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154393713	-	-	154393713	7	5	24	1	0	1	0	1	0	0	0	0	8374	1348	47	0	296	0	KIF4B	5	154393713	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	3121816	154393713	26521547	807	39801											
HAVCR1	26762	broad.mit.edu	37	chr5	156482498	156482498	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtggcagggtagtgtgacAgatggacctgcctctccacc	13	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156482498	T	T	156482498	2	4	24	1	0	0	0	0	0	0	0	1	7039	175	7	5		5	HAVCR1	5	156482498	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	2088785	156482498	24432762	808	39802											
NIPAL4	348938	broad.mit.edu	37	chr5	156890271	156890271	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcattcctgtctagcttcctCatcggcagcagcgtcatcct	8	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156890271	G	G	156890271	2	3	24	1	0	0	0	0	0	0	0	1	10522	813	29	4		4	NIPAL4	5	156890271	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	407773	156890271	24024989	809	39803											
SOX30	11063	broad.mit.edu	37	chr5	157065668	157065668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacgctgggctggaaaaGtgtgacagggcttgggctct	18	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157065668	T	T	157065668	3	4	24	1	0	0	0	0	1	0	0	0	15066	1029	36	3	819	3	SOX30	5	157065668	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	175397	157065668	23849592	810	39804											
EBF1	1879	broad.mit.edu	37	chr5	158223322	158223322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcttcaactagatcaagcTattagatattaatgttcaga	5	6	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158223322	A	A	158223322	1	1	24	0	1	0	0	0	0	0	0	0	4920	1537	53	5		5	EBF1	5	158223322	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1157654	158223322	22691938	811	39805											
PTTG1	9232	broad.mit.edu	37	chr5	159854761	159854761	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgaagagcaccagattgCgcacctccccttgagtggag	12	13	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159854761	G	G	159854761	3	3	24	1	0	0	0	0	1	0	0	0	12927	768	27	4	424	4	PTTG1	5	159854761	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1631439	159854761	21060499	812	39806											
ATP10B	23120	broad.mit.edu	37	chr5	160114961	160114961	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacccgctgctgtgtcaagtTgtagctctgtctccctttct	9	13	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160114961	C	C	160114961	3	2	24	1	0	0	0	0	1	0	0	0	1121	1812	63	5	4352	5	ATP10B	5	160114961	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	260200	160114961	20800299	813	39807											
GABRA6	2559	broad.mit.edu	37	chr5	161114047	161114047	+	Intron	DEL	G	-	-													gagttgggtgttttcatttcGgggaggagagtggagtccca							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	161114047	-	-	161114047	6	5	24	0	1	1	0	1	0	0	0	0	6225	1131	39	0		0	GABRA6	5	161114047	Intron	DEL	G	TCGA-05-4427-01A-21D-1855-08	999086	161114047	19801213	814	39808											
GABRA1	2554	broad.mit.edu	37	chr5	161309524	161309524	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actaaataagagaattgaagTggtaaaatatatggatcatt	8	2	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161309524	G	G	161309524	1	3	24	0	1	0	0	0	0	0	0	0	6220	1711	59	5		5	GABRA1	5	161309524	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	195477	161309524	19605736	815	39809											
GABRG2	2566	broad.mit.edu	37	chr5	161528204	161528204	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttacaatttaaaattatgtCtaaaatccatcttatgttta	2	5	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161528204	A	A	161528204	1	1	24	0	1	0	0	0	0	0	0	0	6232	928	32	3		3	GABRG2	5	161528204	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	218680	161528204	19387056	816	39810											
HMMR	3161	broad.mit.edu	37	chr5	162918060	162918060	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctgtttttagtttataatGatggataaattcgttttaat	7	3	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162918060	T	T	162918060	1	4	24	0	1	0	0	0	0	0	0	0	7309	1305	45	3		3	HMMR	5	162918060	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1389856	162918060	17997200	817	39811											
DOCK2	1794	broad.mit.edu	37	chr5	169098052	169098052	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagcacctgggtctcaattTcacaccactttttctcccac	4	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169098052	C	C	169098052	1	2	24	0	1	0	0	0	0	0	0	0	4727	1798	62	5		5	DOCK2	5	169098052	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	6179992	169098052	11817208	818	39812											
DOCK2	1794	broad.mit.edu	37	chr5	169138802	169138802	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttatttacagttcatcaGcctcaatggatgggttgtaa	8	6	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169138802	A	A	169138802	1	1	24	0	1	0	0	0	0	0	0	0	4727	986	34	4		4	DOCK2	5	169138802	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	40750	169138802	11776458	819	39813											
STK10	6793	broad.mit.edu	37	chr5	171488210	171488210	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatctcccgcctgttgtcGgtggtgagcctcttcatggc	12	13	3	2	rs114842274	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171488210	T	T	171488210	2	4	24	1	0	0	0	0	0	0	0	1	15404	1103	39	1		1	STK10	5	171488210	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2349408	171488210	9427050	820	39814											
STK10	6793	broad.mit.edu	37	chr5	171544485	171544485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaccctgagccccttacCcagcctgatgtctccctcga	6	20	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171544485	A	A	171544485	3	1	24	1	0	0	0	0	1	0	0	0	15404	637	22	2	2450	2	STK10	5	171544485	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	56275	171544485	9370775	821	39815											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171765892	171765892	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacaggcacgctcttagaCacaggatctgtggtcttggc	13	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171765892	A	A	171765892	2	1	24	1	0	0	0	0	0	0	0	1	14370	465	17	3		3	SH3PXD2B	5	171765892	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	221407	171765892	9149368	822	39816											
UNC5A	90249	broad.mit.edu	37	chr5	176301474	176301474	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgtctcccgcctctccaccCagaactacttccgctccctg	5	21	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176301474	G	G	176301474	3	3	24	1	0	0	0	0	1	0	0	0	17117	595	21	4	1315	4	UNC5A	5	176301474	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	4535582	176301474	4613786	823	39817											
DBN1	1627	broad.mit.edu	37	chr5	176894443	176894443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagactcgggcaccaggcCacgcaggcagagcccacggg	15	16	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176894443	A	A	176894443	1	1	24	0	1	0	0	0	0	0	0	0	4285	609	21	2		2	DBN1	5	176894443	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	592969	176894443	4020817	824	39818											
ZNF454	285676	broad.mit.edu	37	chr5	178391974	178391974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaagtcttctctaagaGttcaactcttaataaacatc	5	8	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178391974	T	T	178391974	3	4	24	1	0	0	0	0	1	0	0	0	18050	1029	36	3	583	3	ZNF454	5	178391974	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1497531	178391974	2523286	825	39819											
ADAMTS2	9509	broad.mit.edu	37	chr5	178552069	178552069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattgcagtgcttggcgtGcacggagcgggtggtgttgt	18	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178552069	T	T	178552069	3	4	24	1	0	0	0	0	1	0	0	0	265	1319	46	3	788	3	ADAMTS2	5	178552069	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	160095	178552069	2363191	826	39820											
MAPK9	5601	broad.mit.edu	37	chr5	179696251	179696251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattattgacaatatggaagCacacagacaaaatacataca	5	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179696251	A	A	179696251	1	1	24	0	1	0	0	0	0	0	0	0	9379	725	25	3		3	MAPK9	5	179696251	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1144182	179696251	1219009	827	39821											
FLT4	2324	broad.mit.edu	37	chr5	180048536	180048536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgccctccccgcggccagCctcaccctgcaccgacaggt	9	23	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180048536	A	A	180048536	1	1	24	0	1	0	0	0	0	0	0	0	6002	754	26	3		3	FLT4	5	180048536	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	352285	180048536	866724	828	39822											
FLT4	2324	broad.mit.edu	37	chr5	180058781	180058781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagccactcaccaggcctGgggtgggagacagggtcagc	16	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180058781	T	T	180058781	1	4	24	0	1	0	0	0	0	0	0	0	6002	1363	47	2		2	FLT4	5	180058781	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	10245	180058781	856479	829	39823											
PRPF4B	8899	broad.mit.edu	37	chr6	4037797	4037797	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaagaagaagcagatctcctCggagaaggtaaagacatttc	11	7	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4037797	G	G	4037797	3	3	24	1	0	0	0	0	1	0	0	0	12679	875	31	4	1415	4	PRPF4B	6	4037797	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08		4037797	167077270	830	39824											
CDYL	9425	broad.mit.edu	37	chr6	4935708	4935708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgggagtgaactggtgGtgggacatcacagactactg	14	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4935708	T	T	4935708	1	4	24	0	1	0	0	0	0	0	0	0	3215	1276	44	3		3	CDYL	6	4935708	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	897911	4935708	166179359	831	39825											
F13A1	2162	broad.mit.edu	37	chr6	6250928	6250928	+	Intron	DEL	A	-	-													gccttggagtctcagatcctAaaaagcaggaaattgtgctt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6250928	-	-	6250928	6	5	24	0	1	1	0	1	0	0	0	0	5383	377	13	0		0	F13A1	6	6250928	Intron	DEL	A	TCGA-05-4427-01A-21D-1855-08	1315220	6250928	164864139	832	39826											
LY86	9450	broad.mit.edu	37	chr6	6654824	6654824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacactgaaaaacggtccacCgtggcctgtgccaatgctac	9	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6654824	A	A	6654824	2	1	24	1	0	0	0	0	0	0	0	1	9188	639	23	1		1	LY86	6	6654824	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	403896	6654824	164460243	833	39827											
GCM2	9247	broad.mit.edu	37	chr6	10877347	10877347	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactcatgactccaaggtcaCcctctccctggccccatgtc	6	18	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10877347	G	G	10877347	1	3	24	0	1	0	0	0	0	0	0	0	6360	522	18	4		4	GCM2	6	10877347	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4222523	10877347	160237720	834	39828											
KIF13A	63971	broad.mit.edu	37	chr6	17764426	17764426	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgcagctggctggggtggTggagcccatcggagacagtc	17	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17764426	G	G	17764426	3	3	24	1	0	0	0	0	1	0	0	0	8344	1696	59	5	113	5	KIF13A	6	17764426	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	6887079	17764426	153350641	835	39829											
KIF13A	63971	broad.mit.edu	37	chr6	17799501	17799501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatggcatttgtaccttaCagtgggagaaggtcactgtg	13	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17799501	A	A	17799501	3	1	24	1	0	0	0	0	1	0	0	0	8344	478	17	3	2728	3	KIF13A	6	17799501	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	35075	17799501	153315566	836	39830											
ALDH5A1	7915	broad.mit.edu	37	chr6	24505042	24505042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaacatgccttcctttGcactaaggaggtggtccttc	8	13	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24505042	T	T	24505042	1	4	24	0	1	0	0	0	0	0	0	0	502	1334	46	3		3	ALDH5A1	6	24505042	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	6705541	24505042	146610025	837	39831											
BTN3A2	11118	broad.mit.edu	37	chr6	26377086	26377086	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacggatactggactatggGcctgactgatgggaataagt	14	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26377086	T	T	26377086	1	4	24	0	1	0	0	0	0	0	0	0	1573	1218	42	3		3	BTN3A2	6	26377086	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	1872044	26377086	144737981	838	39832											
OR12D2	26529	broad.mit.edu	37	chr6	29364671	29364671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcctgggaaacctgtcCtacctggatatctgttactc	7	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29364671	A	A	29364671	2	1	24	1	0	0	0	0	0	0	0	1	11025	668	24	2		2	OR12D2	6	29364671	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2987585	29364671	141750396	839	39833											
VARS2	57176	broad.mit.edu	37	chr6	30888132	30888132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaccggtttgtggcccGggaaaagataatgtctgtgc	12	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30888132	T	T	30888132	3	4	24	1	0	0	0	0	1	0	0	0	17251	1116	39	1	1460	1	VARS2	6	30888132	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1523461	30888132	140226935	840	39834											
CCHCR1	54535	broad.mit.edu	37	chr6	31116273	31116273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcctgagcacggctcaGctccaactgcaggccctggg	13	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31116273	T	T	31116273	3	4	24	1	0	0	0	0	1	0	0	0	2905	962	34	3	1162	3	CCHCR1	6	31116273	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	228141	31116273	139998794	841	39835											
POU5F1	5460	broad.mit.edu	37	chr6	31133882	31133882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaccagttatcaatctcCcctttccattcgggattcaa	4	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31133882	A	A	31133882	1	1	24	0	1	0	0	0	0	0	0	0	12377	638	22	2		2	POU5F1	6	31133882	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	17609	31133882	139981185	842	39836											
DDAH2	23564	broad.mit.edu	37	chr6	31695231	31695231	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccccacccaggcttctaGagaaggtacccttccttcct	8	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31695231	A	A	31695231	1	1	24	0	1	0	0	0	0	0	0	0	4355	957	33	4		4	DDAH2	6	31695231	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	561349	31695231	139419836	843	39837											
CFB	629	broad.mit.edu	37	chr6	31917947	31917947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcacagaatcccagtagtGgggacttgggggaggtgagg	18	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31917947	T	T	31917947	1	4	24	0	1	0	0	0	0	0	0	0	3308	1363	47	2		2	CFB	6	31917947	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	222716	31917947	139197120	844	39838											
EGFL8	80864	broad.mit.edu	37	chr6	32135410	32135410	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcagcgaccaggtgctgcTgctggaggagaggctaggtg	17	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32135410	A	A	32135410	3	1	24	1	0	0	0	0	1	0	0	0	5005	1580	55	5	838	5	EGFL8	6	32135410	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	217463	32135410	138979657	845	39839											
VPS52	6293	broad.mit.edu	37	chr6	33236392	33236392	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgtagctgctccaagaAcctgggctctgtcactggag	11	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33236392	T	T	33236392	3	4	24	1	0	0	0	0	1	0	0	0	17341	43	2	5	1644	5	VPS52	6	33236392	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1100982	33236392	137878675	846	39840											
PNPLA1	285848	broad.mit.edu	37	chr6	36269959	36269959	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcaactccactttctcTaagtggcatgccacctgtat	5	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36269959	C	C	36269959	3	2	24	1	0	0	0	0	1	0	0	0	12259	1522	53	5	1146	5	PNPLA1	6	36269959	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	3033567	36269959	134845108	847	39841											
CDKN1A	1026	broad.mit.edu	37	chr6	36653568	36653568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggctgatcttctccaagagGaagccctaatccgcccacag	9	15	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36653568	T	T	36653568	3	4	24	1	0	0	0	0	1	0	0	0	3188	1165	41	3	492	3	CDKN1A	6	36653568	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	383609	36653568	134461499	848	39842											
CPNE5	57699	broad.mit.edu	37	chr6	36711516	36711516	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgggaggagatccgcacgtCgtcgccatccagctccacca	11	17	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36711516	T	T	36711516	3	4	24	1	0	0	0	0	1	0	0	0	3847	884	31	4	276	4	CPNE5	6	36711516	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	57948	36711516	134403551	849	39843											
PEX6	5190	broad.mit.edu	37	chr6	42933312	42933312	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccattatattatctcagaaCtgaaacagcaggaacttcta	5	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42933312	G	G	42933312	1	3	24	0	1	0	0	0	0	0	0	0	11845	580	20	4		4	PEX6	6	42933312	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	6221796	42933312	128181755	850	39844											
PTK7	5754	broad.mit.edu	37	chr6	43111327	43111327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgcagaagcagcccgaGggcgaggagccagagatgga	18	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43111327	T	T	43111327	3	4	24	1	0	0	0	0	1	0	0	0	12871	991	35	2	2274	2	PTK7	6	43111327	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	178015	43111327	128003740	851	39845											
CAPN11	11131	broad.mit.edu	37	chr6	44137734	44137734	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtggggcacaggaagctGgtctccacctgggcaagagg	17	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44137734	A	A	44137734	1	1	24	0	1	0	0	0	0	0	0	0	2650	1363	47	4		4	CAPN11	6	44137734	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1026407	44137734	126977333	852	39846											
CAPN11	11131	broad.mit.edu	37	chr6	44145116	44145116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggcggcatgcacggcagCagggagcccagctgcagacc	15	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44145116	A	A	44145116	3	1	24	1	0	0	0	0	1	0	0	0	2650	711	25	3	1421	3	CAPN11	6	44145116	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7382	44145116	126969951	853	39847											
CAPN11	11131	broad.mit.edu	37	chr6	44147612	44147612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctccaaccctgcccggcCaggctgttcaccctggggga	11	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44147612	A	A	44147612	1	1	24	0	1	0	0	0	0	0	0	0	2650	609	21	2		2	CAPN11	6	44147612	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2496	44147612	126967455	854	39848											
SLC29A1	2030	broad.mit.edu	37	chr6	44201300	44201300	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggactgcctgcctccctcCctgtctgcctcctgcccctt	7	20	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44201300	G	G	44201300	1	3	24	0	1	0	0	0	0	0	0	0	14648	638	22	4		4	SLC29A1	6	44201300	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	53688	44201300	126913767	855	39849											
CRISP3	10321	broad.mit.edu	37	chr6	49696492	49696492	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccttgcaactgtccctgAccaactgatgtttacaggtt	9	11	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49696492	G	G	49696492	3	3	24	1	0	0	0	0	1	0	0	0	3913	275	10	5	52	5	CRISP3	6	49696492	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	5495192	49696492	121418575	856	39850											
C6orf142	90523	broad.mit.edu	37	chr6	54122140	54122140	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggctattcctgaacatgAagctcttgattccaaagagg	11	8	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54122140	T	T	54122140	3	4	24	1	0	0	0	0	1	0	0	0	2356	246	9	5	1398	5	C6orf142	6	54122140	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	4425648	54122140	116992927	857	39851											
HCRTR2	3062	broad.mit.edu	37	chr6	55145149	55145149	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatgtttgcccatactgaaGacagagagactgtgtatgcc	12	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55145149	C	C	55145149	3	2	24	1	0	0	0	0	1	0	0	0	7069	942	33	4	1034	4	HCRTR2	6	55145149	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1023009	55145149	115969918	858	39852											
DST	667	broad.mit.edu	37	chr6	56328462	56328462	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcgcctcgtgatgatggCcgggatcttcggcctcgggg	17	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56328462	T	T	56328462	2	4	24	1	0	0	0	0	0	0	0	1	4823	726	26	4		4	DST	6	56328462	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1183313	56328462	114786605	859	39853											
DST	667	broad.mit.edu	37	chr6	56472827	56472827	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattaaataagatagaaatAattttttagtttcttctgag	5	3	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56472827	T	T	56472827	1	4	24	0	1	0	0	0	0	0	0	0	4823	377	13	5		5	DST	6	56472827	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	144365	56472827	114642240	860	39854											
PRIM2	5558	broad.mit.edu	37	chr6	57512650	57512650	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctggcctctttaaattcctCtctggaaatggatatggaag	9	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57512650	G	G	57512650	3	3	24	1	0	0	0	0	1	0	0	0	12597	913	32	4	1528	4	PRIM2	6	57512650	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1039823	57512650	113602417	861	39855											
LGSN	51557	broad.mit.edu	37	chr6	63990433	63990433	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcctgccaaccattttttCccagtgatcgtgagctgctc	8	13	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63990433	T	T	63990433	2	4	24	1	0	0	0	0	0	0	0	1	8831	855	30	4		4	LGSN	6	63990433	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	6477783	63990433	107124634	862	39856											
LGSN	51557	broad.mit.edu	37	chr6	63990808	63990808	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttgaatttaaaatttcGggcacaccaaaaatgcaaaa	5	7	1	1	rs146916095		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63990808	T	T	63990808	2	4	24	1	0	0	0	0	0	0	0	1	8831	1103	39	1		1	LGSN	6	63990808	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	375	63990808	107124259	863	39857											
PTP4A1	7803	broad.mit.edu	37	chr6	64286797	64286797	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaattaacatggctcgaatGaaccgcccagctcctgtgga	9	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64286797	A	A	64286797	3	1	24	1	0	0	0	0	1	0	0	0	12876	1290	45	4	14	4	PTP4A1	6	64286797	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	295989	64286797	106828270	864	39858											
PTP4A1	7803	broad.mit.edu	37	chr6	64289065	64289065	+	Intron	DEL	G	-	-													attacttaaataggaagggtGgtagataatacttctgagtt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64289065	-	-	64289065	6	5	24	0	1	1	0	1	0	0	0	0	12876	1363	47	0		0	PTP4A1	6	64289065	Intron	DEL	G	TCGA-05-4427-01A-21D-1855-08	2268	64289065	106826002	865	39859											
EYS	346007	broad.mit.edu	37	chr6	66054071	66054071	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttttcgccttcagatcCtttaaaaaaaaagagataaa	5	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66054071	A	A	66054071	5	1	24	1	0	0	0	0	0	0	1	0	5375	695	24	2	8073	2	EYS	6	66054071	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	1765006	66054071	105060996	866	39860											
BAI3	577	broad.mit.edu	37	chr6	69666725	69666725	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaatgaacccaaattatccCaaaagaaacatttcataacg	4	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69666725	G	G	69666725	1	3	24	0	1	0	0	0	0	0	0	0	1305	609	21	4		4	BAI3	6	69666725	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3612654	69666725	101448342	867	39861											
BAI3	577	broad.mit.edu	37	chr6	70048873	70048873	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggagtagtttcaacaaCagctttgtcagccaccaccg	10	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70048873	T	T	70048873	3	4	24	1	0	0	0	0	1	0	0	0	1305	478	17	4	3344	4	BAI3	6	70048873	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	382148	70048873	101066194	868	39862											
BAI3	577	broad.mit.edu	37	chr6	70065869	70065869	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattgttctgtgaaagggcTgtatatgtaaagcagccccc	10	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70065869	A	A	70065869	1	1	24	0	1	0	0	0	0	0	0	0	1305	1595	55	5		5	BAI3	6	70065869	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	16996	70065869	101049198	869	39863											
COL19A1	1310	broad.mit.edu	37	chr6	70778330	70778330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagggttccctggggataCaaggcccccaaggtccacct	11	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70778330	A	A	70778330	3	1	24	1	0	0	0	0	1	0	0	0	3708	479	17	3	1240	3	COL19A1	6	70778330	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	712461	70778330	100336737	870	39864											
COL19A1	1310	broad.mit.edu	37	chr6	70916803	70916803	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctagagggtgggagagagGaagggccatatgtgatctgc	19	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70916803	A	A	70916803	1	1	24	0	1	0	0	0	0	0	0	0	3708	1189	41	4		4	COL19A1	6	70916803	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	138473	70916803	100198264	871	39865											
COL9A1	1297	broad.mit.edu	37	chr6	70976304	70976304	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttatcaatcattatttaAaaaagaatggtaaaatatcg	4	4	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70976304	C	C	70976304	1	2	24	0	1	0	0	0	0	0	0	0	3739	29	1	5		5	COL9A1	6	70976304	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	59501	70976304	100138763	872	39866											
COL9A1	1297	broad.mit.edu	37	chr6	71003856	71003856	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaatctgccatagtgtgtGgttttatacttactggaaca	8	6	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71003856	A	A	71003856	1	1	24	0	1	0	0	0	0	0	0	0	3739	1363	47	4		4	COL9A1	6	71003856	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	27552	71003856	100111211	873	39867											
SENP6	26054	broad.mit.edu	37	chr6	76385184	76385184	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcaagatacagctagacGgtaagctattttatgtcttt	7	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76385184	T	T	76385184	4	4	24	1	0	0	0	0	0	1	0	0	14163	1130	39	1	1472	1	SENP6	6	76385184	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5381328	76385184	94729883	874	39868											
PHIP	55023	broad.mit.edu	37	chr6	79671400	79671400	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagtagctacatcaaatggTtctaacctgtaaaacctgtt	6	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79671400	C	C	79671400	1	2	24	0	1	0	0	0	0	0	0	0	11937	1740	60	5		5	PHIP	6	79671400	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3286216	79671400	91443667	875	39869											
UBE2CBP	90025	broad.mit.edu	37	chr6	83602681	83602681	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgagctgactgctggcCtcggtgtgctcctgcttgag	13	13	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83602681	A	A	83602681	1	1	24	0	1	0	0	0	0	0	0	0	16973	696	24	2		2	UBE2CBP	6	83602681	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	3931281	83602681	87512386	876	39870											
RIPPLY2	134701	broad.mit.edu	37	chr6	84563488	84563488	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgccgaaccacgccgcggAggcggtgagtgagccacgcg	17	14	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84563488	T	T	84563488	3	4	24	1	0	0	0	0	1	0	0	0	13496	304	11	5	176	5	RIPPLY2	6	84563488	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	960807	84563488	86551579	877	39871											
NT5E	4907	broad.mit.edu	37	chr6	86199334	86199334	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatggtatgctcccaggcccAgctcctcagtgtgtcatgtt	10	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86199334	T	T	86199334	1	4	24	0	1	0	0	0	0	0	0	0	10788	203	7	5		5	NT5E	6	86199334	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1635846	86199334	84915733	878	39872											
SYNCRIP	10492	broad.mit.edu	37	chr6	86324916	86324916	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcttcatatccaccacgaTagttatggtaatcataacca	5	10	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86324916	A	A	86324916	3	1	24	1	0	0	0	0	1	0	0	0	15563	1406	49	5	491	5	SYNCRIP	6	86324916	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	125582	86324916	84790151	879	39873											
SYNCRIP	10492	broad.mit.edu	37	chr6	86328847	86328847	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttagaaaactgccaacatCactaaaaccaaaaggtttta	4	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86328847	A	A	86328847	1	1	24	0	1	0	0	0	0	0	0	0	15563	841	29	3		3	SYNCRIP	6	86328847	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3931	86328847	84786220	880	39874											
CGA	1081	broad.mit.edu	37	chr6	87797821	87797821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacttgaaccacaaatttGgtcacgcaccctgcacatca	5	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87797821	T	T	87797821	1	4	24	0	1	0	0	0	0	0	0	0	3325	1363	47	2		2	CGA	6	87797821	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1468974	87797821	83317246	881	39875											
PNRC1	10957	broad.mit.edu	37	chr6	89790745	89790745	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctccgcctcctttaccccgGatcccggacccccgggcact	9	21	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89790745	A	A	89790745	2	1	24	1	0	0	0	0	0	0	0	1	12269	1161	41	4		4	PNRC1	6	89790745	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1992924	89790745	81324322	882	39876											
EPHA7	2045	broad.mit.edu	37	chr6	93956565	93956565	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggtttcgaatcattttgtCtagaattccaactatctgtt	7	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93956565	A	A	93956565	3	1	24	1	0	0	0	0	1	0	0	0	5214	913	32	3	337	3	EPHA7	6	93956565	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	4165820	93956565	77158502	883	39877											
EPHA7	2045	broad.mit.edu	37	chr6	93964499	93964499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgggtgctgtccaccttaCtggaatttttccaccctgtt	8	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93964499	A	A	93964499	3	1	24	1	0	0	0	0	1	0	0	0	5214	565	20	3	614	3	EPHA7	6	93964499	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7934	93964499	77150568	884	39878											
FUT9	10690	broad.mit.edu	37	chr6	96651104	96651104	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggctgtttcatggcaTgtcttctcatttacatcaaa	7	10	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96651104	A	A	96651104	3	1	24	1	0	0	0	0	1	0	0	0	6171	1464	51	5	75	5	FUT9	6	96651104	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	2686605	96651104	74463963	885	39879											
KLHL32	114792	broad.mit.edu	37	chr6	97423827	97423827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagagcagctggcccacaGggctgggaaaaggaaaaatg	16	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97423827	T	T	97423827	1	4	24	0	1	0	0	0	0	0	0	0	8457	1015	35	2		2	KLHL32	6	97423827	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	772723	97423827	73691240	886	39880											
FBXL4	26235	broad.mit.edu	37	chr6	99322095	99322095	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaacaaaacccaaaacCaatcccaaaattaaacccca	0	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99322095	A	A	99322095	1	1	24	0	1	0	0	0	0	0	0	0	5778	609	21	2		2	FBXL4	6	99322095	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1898268	99322095	71792972	887	39881											
FBXL4	26235	broad.mit.edu	37	chr6	99365615	99365615	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctgccaaaaaaagaaacttCcctataatacagtttagaat	4	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99365615	G	G	99365615	1	3	24	0	1	0	0	0	0	0	0	0	5778	870	30	4		4	FBXL4	6	99365615	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	43520	99365615	71749452	888	39882											
PREP	5550	broad.mit.edu	37	chr6	105726111	105726111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtgggcttccccgcccCgtggcccgccttggtgtcca	14	17	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105726111	A	A	105726111	3	1	24	1	0	0	0	0	1	0	0	0	12580	652	23	1	95	1	PREP	6	105726111	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	6360496	105726111	65388956	889	39883											
LACE1	246269	broad.mit.edu	37	chr6	108843692	108843692	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagaactccttattgtGggacttgaaggaatcatttt	10	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108843692	T	T	108843692	1	4	24	0	1	0	0	0	0	0	0	0	8667	1363	47	2		2	LACE1	6	108843692	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	3117581	108843692	62271375	890	39884											
WASF1	8936	broad.mit.edu	37	chr6	110429644	110429644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgttggctagaacccCaatgaaataaagaatgtttg	9	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110429644	A	A	110429644	1	1	24	0	1	0	0	0	0	0	0	0	17379	609	21	2		2	WASF1	6	110429644	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1585952	110429644	60685423	891	39885											
SLC22A16	85413	broad.mit.edu	37	chr6	110778046	110778046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggcctgaagacaacagGgccccggtgtcctccaaact	10	14	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110778046	T	T	110778046	2	4	24	1	0	0	0	0	0	0	0	1	14560	1219	43	2		2	SLC22A16	6	110778046	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	348402	110778046	60337021	892	39886											
TRAF3IP2	10758	broad.mit.edu	37	chr6	111922372	111922372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataacccctaggagattctgTaataaatatgcttcagagcc	7	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111922372	C	C	111922372	1	2	24	0	1	0	0	0	0	0	0	0	16565	1653	57	5		5	TRAF3IP2	6	111922372	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1144326	111922372	59192695	893	39887											
KPNA5	3841	broad.mit.edu	37	chr6	117047556	117047556	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattttaatgtcaaggttccAaaaaccttgacattttgaag	6	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117047556	G	G	117047556	1	3	24	0	1	0	0	0	0	0	0	0	8504	145	5	5		5	KPNA5	6	117047556	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	5125184	117047556	54067511	894	39888											
ROS1	6098	broad.mit.edu	37	chr6	117686136	117686136	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatctataaaactgaaagtTatttttaaatatcaactatc	2	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117686136	A	A	117686136	1	1	24	0	1	0	0	0	0	0	0	0	13642	1769	61	5		5	ROS1	6	117686136	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	638580	117686136	53428931	895	39889											
FAM184A	79632	broad.mit.edu	37	chr6	119327671	119327671	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctttagtcaagtcaagctCattctgaagcctttcctggg	9	10	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119327671	T	T	119327671	3	4	24	1	0	0	0	0	1	0	0	0	5557	835	29	4	1714	4	FAM184A	6	119327671	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1641535	119327671	51787396	896	39890											
CLVS2	134829	broad.mit.edu	37	chr6	123319273	123319273	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggaccactatggcaggaaGattctagtcctttttgctgc	10	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123319273	A	A	123319273	2	1	24	1	0	0	0	0	0	0	0	1	3604	933	33	4		4	CLVS2	6	123319273	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	3991602	123319273	47795794	897	39891											
HDDC2	51020	broad.mit.edu	37	chr6	125621627	125621627	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtctcagtagtaaaaacGggtgcacacccatagaccag	11	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125621627	A	A	125621627	1	1	24	0	1	0	0	0	0	0	0	0	7083	1131	39	4		4	HDDC2	6	125621627	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2302354	125621627	45493440	898	39892											
NCOA7	135112	broad.mit.edu	37	chr6	126236446	126236446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccaagaaagtggacatGgtgttaacatctgtcacaaa	9	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126236446	T	T	126236446	1	4	24	0	1	0	0	0	0	0	0	0	10329	1363	47	2		2	NCOA7	6	126236446	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	614819	126236446	44878621	899	39893											
TRMT11	60487	broad.mit.edu	37	chr6	126319437	126319437	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaataagacattgacacaAgaagagaaaatcaagcgaat	7	5	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126319437	G	G	126319437	2	3	24	1	0	0	0	0	0	0	0	1	16687	69	3	5		5	TRMT11	6	126319437	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	82991	126319437	44795630	900	39894											
ARHGAP18	93663	broad.mit.edu	37	chr6	129959492	129959492	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccagattgatccaattaaTtgtaagcaattattcctttg	5	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129959492	C	C	129959492	1	2	24	0	1	0	0	0	0	0	0	0	870	1508	52	5		5	ARHGAP18	6	129959492	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3640055	129959492	41155575	901	39895											
TMEM200A	114801	broad.mit.edu	37	chr6	130762771	130762771	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagtccttggacttagacCggggtccctccactctaact	8	14	1	1	rs146211569		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130762771	G	G	130762771	3	3	24	1	0	0	0	0	1	0	0	0	16246	643	23	4	1206	4	TMEM200A	6	130762771	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	803279	130762771	40352296	902	39896											
CTAGE9	643854	broad.mit.edu	37	chr6	132031874	132031874	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttttgaataaggctaaacTtttcaagtagtttacatttt	5	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132031874	A	A	132031874	3	1	24	1	0	0	0	0	1	0	0	0	4030	1609	56	5	2053	5	CTAGE9	6	132031874	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1269103	132031874	39083193	903	39897											
MYB	4602	broad.mit.edu	37	chr6	135507150	135507150	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggaaaacaaggtggaccCgggaagaggtaactaatcat	14	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135507150	A	A	135507150	2	1	24	1	0	0	0	0	0	0	0	1	10101	643	23	1		1	MYB	6	135507150	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	3475276	135507150	35607917	904	39898											
BCLAF1	9774	broad.mit.edu	37	chr6	136597158	136597158	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggtctttgagcttttcaGactttacctgctcaggtgac	10	9	3	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136597158	A	A	136597158	3	1	24	1	0	0	0	0	1	0	0	0	1388	942	33	4	1293	4	BCLAF1	6	136597158	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1090008	136597158	34517909	905	39899											
BCLAF1	9774	broad.mit.edu	37	chr6	136600943	136600943	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatcttgatcttgatcgaGaactagactgtgatctagac	10	7	3	7			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136600943	T	T	136600943	3	4	24	1	0	0	0	0	1	0	0	0	1388	942	33	3	2744	3	BCLAF1	6	136600943	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3785	136600943	34514124	906	39900											
MAP7	9053	broad.mit.edu	37	chr6	136709384	136709384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatctccatcaccctcttaTcctcaaatagtgaaagattc	3	12	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136709384	C	C	136709384	1	2	24	0	1	0	0	0	0	0	0	0	9358	1450	50	5		5	MAP7	6	136709384	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	108441	136709384	34405683	907	39901											
KIAA1244	57221	broad.mit.edu	37	chr6	138599509	138599509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcagtatctctcacgatGggttcgcagctctctggaag	12	10	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138599509	T	T	138599509	1	4	24	0	1	0	0	0	0	0	0	0	8287	1363	47	2		2	KIAA1244	6	138599509	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1890125	138599509	32515558	908	39902											
CITED2	10370	broad.mit.edu	37	chr6	139694840	139694840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgcgctcggggggtgcCctccgttcacagtccccggc	14	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139694840	A	A	139694840	3	1	24	1	0	0	0	0	1	0	0	0	3471	623	22	2	574	2	CITED2	6	139694840	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1095331	139694840	31420227	909	39903											
PCMT1	5110	broad.mit.edu	37	chr6	150114744	150114744	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagagctagtagatgactcAgtaaataatgtcaggaagga	11	4	2	3	rs142533009		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150114744	C	C	150114744	2	2	24	1	0	0	0	0	0	0	0	1	11679	175	7	5		5	PCMT1	6	150114744	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	10419904	150114744	21000323	910	39904											
MTHFD1L	25902	broad.mit.edu	37	chr6	151256325	151256325	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtcacttttcacttctggGatgtaggtggtcaggagaaa	12	7	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151256325	A	A	151256325	1	1	24	0	1	0	0	0	0	0	0	0	10022	1189	41	4		4	MTHFD1L	6	151256325	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1141581	151256325	19858742	911	39905											
C6orf97	80129	broad.mit.edu	37	chr6	151914468	151914468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaatttctgaaaaaccCaaacattgaaaaataatgta	5	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151914468	A	A	151914468	1	1	24	0	1	0	0	0	0	0	0	0	2399	609	21	2		2	C6orf97	6	151914468	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	658143	151914468	19200599	912	39906											
ESR1	2099	broad.mit.edu	37	chr6	152382262	152382262	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattttgcttaattctggtGagttgataacacaagataac	7	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152382262	T	T	152382262	1	4	24	0	1	0	0	0	0	0	0	0	5298	1305	45	3		3	ESR1	6	152382262	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	467794	152382262	18732805	913	39907											
SYNE1	23345	broad.mit.edu	37	chr6	152453418	152453418	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccctctgttgcaccacGttatctcccactccatctcc	7	18	3	0	rs150419138	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152453418	A	A	152453418	1	1	24	0	1	0	0	0	0	0	0	0	15564	1160	40	4		4	SYNE1	6	152453418	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	71156	152453418	18661649	914	39908											
SYNE1	23345	broad.mit.edu	37	chr6	152757291	152757291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatattatttatctctgccCtcaaataaagtgcacatatt	3	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152757291	A	A	152757291	1	1	24	0	1	0	0	0	0	0	0	0	15564	696	24	2		2	SYNE1	6	152757291	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	303873	152757291	18357776	915	39909											
SYNE1	23345	broad.mit.edu	37	chr6	152792681	152792681	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagaaactgaactgtgtTgctaaatccatggctcatag	8	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152792681	A	A	152792681	1	1	24	0	1	0	0	0	0	0	0	0	15564	1827	63	5		5	SYNE1	6	152792681	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	35390	152792681	18322386	916	39910											
SYNE1	23345	broad.mit.edu	37	chr6	152826529	152826529	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttttacttctattccagtCtgcctttgtgttataaaaac	4	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152826529	A	A	152826529	3	1	24	1	0	0	0	0	1	0	0	0	15564	912	32	3	26433	3	SYNE1	6	152826529	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	33848	152826529	18288538	917	39911											
ARID1B	57492	broad.mit.edu	37	chr6	157511283	157511283	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagggcatgagcatgccCgatgtgatgggcaggatgcc	16	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157511283	A	A	157511283	2	1	24	1	0	0	0	0	0	0	0	1	916	639	23	1		1	ARID1B	6	157511283	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	4684754	157511283	13603784	918	39912											
SYNJ2	8871	broad.mit.edu	37	chr6	158502332	158502332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagctcatgcagaccttggGgagttatgggacaattgttc	13	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158502332	T	T	158502332	3	4	24	1	0	0	0	0	1	0	0	0	15572	1232	43	2	2833	2	SYNJ2	6	158502332	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	991049	158502332	12612735	919	39913											
SERAC1	84947	broad.mit.edu	37	chr6	158571711	158571713	+	Intron	DEL	CTT	-	-													attaagcttgtcatagtaaaCttcttttttgttgggaaaca							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158571713	-	-	158571711	6	5	24	0	1	1	0	1	0	0	0	0	14187	580	20	0		0	SERAC1	6	158571711	Intron	DEL	CTT	TCGA-05-4427-01A-21D-1855-08	69379	158571711	12543356	920	39914											
IGF2R	3482	broad.mit.edu	37	chr6	160482939	160482939	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttctccaccaggatcacGtttgagtgtgctcagatatc	9	12	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160482939	T	T	160482939	2	4	24	1	0	0	0	0	0	0	0	1	7646	1132	40	3		3	IGF2R	6	160482939	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1911228	160482939	10632128	921	39915											
LPA	4018	broad.mit.edu	37	chr6	161022112	161022112	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggatctggatttcggcaGtagttcttgatcaagccact	10	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161022112	A	A	161022112	2	1	24	1	0	0	0	0	0	0	0	1	8990	1024	36	4		4	LPA	6	161022112	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	539173	161022112	10092955	922	39916											
PLG	5340	broad.mit.edu	37	chr6	161160234	161160234	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatattgccttgctaaagcTaagcaggtactcgttcacct	8	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161160234	A	A	161160234	3	1	24	1	0	0	0	0	1	0	0	0	12181	1522	53	5	2078	5	PLG	6	161160234	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	138122	161160234	9954833	923	39917											
AGPAT4	56895	broad.mit.edu	37	chr6	161587511	161587511	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgtcctgggagccctgctGagagcagggctctgccctcc	13	15	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161587511	A	A	161587511	1	1	24	0	1	0	0	0	0	0	0	0	389	1305	45	4		4	AGPAT4	6	161587511	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	427277	161587511	9527556	924	39918											
PARK2	5071	broad.mit.edu	37	chr6	162475080	162475080	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaaacagtgaagatgtcatCattttcttgcaataagagga	9	6	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162475080	A	A	162475080	1	1	24	0	1	0	0	0	0	0	0	0	11543	841	29	3		3	PARK2	6	162475080	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	887569	162475080	8639987	925	39919											
C6orf118	168090	broad.mit.edu	37	chr6	165706973	165706973	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctgagtctacaatgtgagGataaacaatagggaaatatt	9	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165706973	T	T	165706973	1	4	24	0	1	0	0	0	0	0	0	0	2346	1189	41	3		3	C6orf118	6	165706973	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3231893	165706973	5408094	926	39920											
PDE10A	10846	broad.mit.edu	37	chr6	165801671	165801671	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatataaggttctacaataAaaagtagctgttgcttttaa	6	4	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165801671	C	C	165801671	1	2	24	0	1	0	0	0	0	0	0	0	11724	29	1	5		5	PDE10A	6	165801671	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	94698	165801671	5313396	927	39921											
PDE10A	10846	broad.mit.edu	37	chr6	165810023	165810023	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtcacggaagttcagaAtttggtattaaagaatcaga	9	4	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165810023	C	C	165810023	1	2	24	0	1	0	0	0	0	0	0	0	11724	116	4	5		5	PDE10A	6	165810023	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	8352	165810023	5305044	928	39922											
RPS6KA2	6196	broad.mit.edu	37	chr6	166844023	166844023	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccgagaagtatctctgcCggaggatgcggtccaggagc	15	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166844023	T	T	166844023	3	4	24	1	0	0	0	0	1	0	0	0	13762	652	23	4	726	4	RPS6KA2	6	166844023	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1034000	166844023	4271044	929	39923											
RPS6KA2	6196	broad.mit.edu	37	chr6	166952269	166952269	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatctccttcacgacgccttCttcctgcaagagagcggcac	8	15	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166952269	T	T	166952269	3	4	24	1	0	0	0	0	1	0	0	0	13762	922	32	4	2178	4	RPS6KA2	6	166952269	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	108246	166952269	4162798	930	39924											
KIF25	3834	broad.mit.edu	37	chr6	168434741	168434741	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggtgatgagtggggcagaGaaatatggcagggaagccag	18	4	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168434741	A	A	168434741	1	1	24	0	1	0	0	0	0	0	0	0	8363	957	33	4		4	KIF25	6	168434741	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1482472	168434741	2680326	931	39925											
FAM120B	84498	broad.mit.edu	37	chr6	170697491	170697491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagacgagtgatttcatGccctggaatgtatttgacgg	13	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170697491	T	T	170697491	3	4	24	1	0	0	0	0	1	0	0	0	5463	1319	46	3	2422	3	FAM120B	6	170697491	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2262750	170697491	417576	932	39926											
SDK1	221935	broad.mit.edu	37	chr7	4272989	4272989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtgacttacgagttccGggtggtggctgtgaatgagg	18	5	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4272989	T	T	4272989	3	4	24	1	0	0	0	0	1	0	0	0	14081	1116	39	1	6092	1	SDK1	7	4272989	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08		4272989	154865674	933	39927											
ACTB	60	broad.mit.edu	37	chr7	5568416	5568416	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacagccaggccagacggggGacatgcagaaagtgcaaaga	15	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5568416	A	A	5568416	1	1	24	0	1	0	0	0	0	0	0	0	193	1189	41	4		4	ACTB	7	5568416	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1295427	5568416	153570247	934	39928											
THSD7A	221981	broad.mit.edu	37	chr7	11521554	11521554	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgggcatggggcatcacaGgccacagggatggggaagat	17	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11521554	T	T	11521554	2	4	24	1	0	0	0	0	0	0	0	1	16002	987	35	2		2	THSD7A	7	11521554	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	5953138	11521554	147617109	935	39929											
AGR3	155465	broad.mit.edu	37	chr7	16904562	16904562	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttccatgaagaagtctaTgtagttttggtgaagatata	9	3	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16904562	C	C	16904562	1	2	24	0	1	0	0	0	0	0	0	0	396	1479	51	5		5	AGR3	7	16904562	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	5383008	16904562	142234101	936	39930											
RAPGEF5	9771	broad.mit.edu	37	chr7	22259521	22259521	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttcttttttgtccgtctgCaaaaactgatagttttcttt	6	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22259521	G	G	22259521	3	3	24	1	0	0	0	0	1	0	0	0	13155	709	25	4	1763	4	RAPGEF5	7	22259521	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5354959	22259521	136879142	937	39931											
RAPGEF5	9771	broad.mit.edu	37	chr7	22330820	22330820	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttagacgcacaagaatttCatcactgctttcttcggagt	8	9	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22330820	G	G	22330820	3	3	24	1	0	0	0	0	1	0	0	0	13155	835	29	4	2014	4	RAPGEF5	7	22330820	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	71299	22330820	136807843	938	39932											
STK31	56164	broad.mit.edu	37	chr7	23768877	23768877	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtttgatcaggcaagtcaCgtattttaaatatttttgct	7	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23768877	G	G	23768877	1	3	24	0	1	0	0	0	0	0	0	0	15414	551	19	4		4	STK31	7	23768877	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1438057	23768877	135369786	939	39933											
OSBPL3	26031	broad.mit.edu	37	chr7	24945966	24945966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataccagggcaaagaggagcCgggagacttgcgaggaggtg	18	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24945966	A	A	24945966	1	1	24	0	1	0	0	0	0	0	0	0	11373	667	23	1		1	OSBPL3	7	24945966	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1177089	24945966	134192697	940	39934											
CCDC129	223075	broad.mit.edu	37	chr7	31682505	31682505	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggaggaagagtttctGcttgaggccatggaggggcc	18	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31682505	T	T	31682505	2	4	24	1	0	0	0	0	0	0	0	1	2790	1306	46	3		3	CCDC129	7	31682505	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	6736539	31682505	127456158	941	39935											
CCDC129	223075	broad.mit.edu	37	chr7	31682811	31682811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatcatactcaagacaagttCcttcatgttgactctgaggc	8	10	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31682811	A	A	31682811	3	1	24	1	0	0	0	0	1	0	0	0	2790	854	30	3	1865	3	CCDC129	7	31682811	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	306	31682811	127455852	942	39936											
BBS9	27241	broad.mit.edu	37	chr7	33392559	33392559	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgaattggtattataccAtgaatgaactctttttatgg	7	4	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33392559	G	G	33392559	1	3	24	0	1	0	0	0	0	0	0	0	1347	232	8	5		5	BBS9	7	33392559	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1709748	33392559	125746104	943	39937											
NPSR1	387129	broad.mit.edu	37	chr7	34889356	34889356	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtgcatggaacccgagcCaacttcaccccaccctcgtc	7	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34889356	A	A	34889356	1	1	24	0	1	0	0	0	0	0	0	0	10695	609	21	2		2	NPSR1	7	34889356	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1496797	34889356	124249307	944	39938											
GPR141	353345	broad.mit.edu	37	chr7	37780395	37780395	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagaaaactgcatgctgtgGctgccagtgctggcatgtgg	14	9	0	1	rs146912152	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37780395	A	A	37780395	3	1	24	1	0	0	0	0	1	0	0	0	6714	1203	42	4	402	4	GPR141	7	37780395	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2891039	37780395	121358268	945	39939											
AMPH	273	broad.mit.edu	37	chr7	38471728	38471728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatgaaataaaatataaCaaggtttccaaatttctggg	7	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38471728	A	A	38471728	1	1	24	0	1	0	0	0	0	0	0	0	588	493	17	3		3	AMPH	7	38471728	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	691333	38471728	120666935	946	39940											
AMPH	273	broad.mit.edu	37	chr7	38533894	38533894	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctaagtttggaatcatcaGgcagcagaactgcacagtgc	10	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38533894	C	C	38533894	1	2	24	0	1	0	0	0	0	0	0	0	588	1015	35	4		4	AMPH	7	38533894	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	62166	38533894	120604769	947	39941											
VPS41	27072	broad.mit.edu	37	chr7	38768139	38768139	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttttggggaaaaccttctTacctgatggaagaatagggg	12	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38768139	A	A	38768139	1	1	24	0	1	0	0	0	0	0	0	0	17337	1769	61	5		5	VPS41	7	38768139	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	234245	38768139	120370524	948	39942											
GLI3	2737	broad.mit.edu	37	chr7	42004503	42004503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctggcgcctgctgccccCaaagctggcacatggctggt	13	15	0	0	rs142696576		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42004503	A	A	42004503	3	1	24	1	0	0	0	0	1	0	0	0	6503	594	21	2	578	2	GLI3	7	42004503	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3236364	42004503	117134160	949	39943											
GLI3	2737	broad.mit.edu	37	chr7	42018079	42018079	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttatcaccagacaatactCtagtcctcttctcttgccac	3	14	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42018079	A	A	42018079	1	1	24	0	1	0	0	0	0	0	0	0	6503	928	32	3		3	GLI3	7	42018079	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	13576	42018079	117120584	950	39944											
NPC1L1	29881	broad.mit.edu	37	chr7	44555307	44555307	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacatctgcccatggctcgTttgcacttcctgagcttttg	9	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44555307	C	C	44555307	1	2	24	0	1	0	0	0	0	0	0	0	10666	1740	60	5		5	NPC1L1	7	44555307	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2537228	44555307	114583356	951	39945											
ZMIZ2	83637	broad.mit.edu	37	chr7	44797437	44797437	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggaccattcttcttttttCtcttcctagatgggggccgg	10	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44797437	A	A	44797437	1	1	24	0	1	0	0	0	0	0	0	0	17823	928	32	3		3	ZMIZ2	7	44797437	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	242130	44797437	114341226	952	39946											
TBRG4	9238	broad.mit.edu	37	chr7	45145229	45145229	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgccaggaaggccaggtgCttgtacttgagcttccgcat	12	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45145229	T	T	45145229	2	4	24	1	0	0	0	0	0	0	0	1	15771	796	28	4		4	TBRG4	7	45145229	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	347792	45145229	113993434	953	39947											
SUN3	256979	broad.mit.edu	37	chr7	48046873	48046873	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcaggacatctatttgttcGatcaaaaatagaatttgacg	7	6	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48046873	A	A	48046873	2	1	24	1	0	0	0	0	0	0	0	1	15511	1048	37	4		4	SUN3	7	48046873	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2901644	48046873	111091790	954	39948											
ABCA13	154664	broad.mit.edu	37	chr7	48349764	48349764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagcatgctggctgggggCagtcctctgcaggactctgc	16	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48349764	A	A	48349764	1	1	24	0	1	0	0	0	0	0	0	0	31	725	25	3		3	ABCA13	7	48349764	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	302891	48349764	110788899	955	39949											
ABCA13	154664	broad.mit.edu	37	chr7	48431793	48431793	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcccattgtgtaaggaagtGaagacaatagaaagagacac	11	6	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48431793	C	C	48431793	1	2	24	0	1	0	0	0	0	0	0	0	31	1305	45	4		4	ABCA13	7	48431793	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	82029	48431793	110706870	956	39950											
ABCA13	154664	broad.mit.edu	37	chr7	48545808	48545808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttctgctaattgaccaGggcctgggcaaagcaagcag	11	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48545808	T	T	48545808	1	4	24	0	1	0	0	0	0	0	0	0	31	1015	35	2		2	ABCA13	7	48545808	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	114015	48545808	110592855	957	39951											
FIGNL1	63979	broad.mit.edu	37	chr7	50514648	50514648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcatcttctgtacactaCtcattttgaaaacattattt	3	9	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50514648	A	A	50514648	3	1	24	1	0	0	0	0	1	0	0	0	5949	565	20	3	1690	3	FIGNL1	7	50514648	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1968840	50514648	108624015	958	39952											
ZNF479	90827	broad.mit.edu	37	chr7	57187958	57187958	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaggagcgcctaaagtcTtggccacattcttcacatgt	10	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57187958	G	G	57187958	3	3	24	1	0	0	0	0	1	0	0	0	18060	1606	56	5	414	5	ZNF479	7	57187958	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	6673310	57187958	101950705	959	39953											
ZNF479	90827	broad.mit.edu	37	chr7	57188160	57188160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacacctgcagggtttctctCcagtatgaattctcttgtgg	9	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57188160	A	A	57188160	3	1	24	1	0	0	0	0	1	0	0	0	18060	855	30	3	616	3	ZNF479	7	57188160	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	202	57188160	101950503	960	39954											
ZNF479	90827	broad.mit.edu	37	chr7	57188767	57188767	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattgtaatttctcatgtcCacattttccatatgttcttg	4	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57188767	A	A	57188767	4	1	24	1	0	0	0	0	0	1	0	0	18060	603	21	2	1223	2	ZNF479	7	57188767	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	607	57188767	101949896	961	39955											
ZNF479	90827	broad.mit.edu	37	chr7	57194477	57194477	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacacaagcacttaccacaCggccataggcagagattttt	7	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57194477	T	T	57194477	1	4	24	0	1	0	0	0	0	0	0	0	18060	551	19	4		4	ZNF479	7	57194477	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	5710	57194477	101944186	962	39956											
WBSCR17	64409	broad.mit.edu	37	chr7	70885805	70885805	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccaaagcccagccttaagTagctaaatgctgttcattcc	6	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70885805	A	A	70885805	1	1	24	0	1	0	0	0	0	0	0	0	17391	1653	57	5		5	WBSCR17	7	70885805	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	13691328	70885805	88252858	963	39957											
WBSCR17	64409	broad.mit.edu	37	chr7	71135038	71135038	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaagaatttccagtggtacCtggaccatgtttacccagaa	9	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71135038	T	T	71135038	2	4	24	1	0	0	0	0	0	0	0	1	17391	680	24	4		4	WBSCR17	7	71135038	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	249233	71135038	88003625	964	39958											
FKBP6	8468	broad.mit.edu	37	chr7	72708303	72708303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagcagacaaggagtccCagggagaaaagggtaggttg	17	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72708303	A	A	72708303	1	1	24	0	1	0	0	0	0	0	0	0	5969	609	21	2		2	FKBP6	7	72708303	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1573265	72708303	86430360	965	39959											
TRIM50	135892	broad.mit.edu	37	chr7	72728365	72728365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagttcacccaggccctGgaccgccaaacagctattca	7	16	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72728365	T	T	72728365	1	4	24	0	1	0	0	0	0	0	0	0	16651	1363	47	2		2	TRIM50	7	72728365	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	20062	72728365	86410298	966	39960											
ELN	2006	broad.mit.edu	37	chr7	73462781	73462781	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgggaacaagtgggctctgGagatacaggagcactgtttc	14	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73462781	T	T	73462781	1	4	24	0	1	0	0	0	0	0	0	0	5113	1189	41	3		3	ELN	7	73462781	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	734416	73462781	85675882	967	39961											
CCL26	10344	broad.mit.edu	37	chr7	75398949	75398949	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaaaagattccgcaggctCcccagagggctgcagagcca	12	13	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75398949	T	T	75398949	1	4	24	0	1	0	0	0	0	0	0	0	2926	870	30	4		4	CCL26	7	75398949	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1936168	75398949	83739714	968	39962											
RHBDD2	57414	broad.mit.edu	37	chr7	75517545	75517545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctacccagcttctgcgGgcacctccctgggcatccag	11	16	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75517545	T	T	75517545	3	4	24	1	0	0	0	0	1	0	0	0	13426	1232	43	2	987	2	RHBDD2	7	75517545	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	118596	75517545	83621118	969	39963											
SRCRB4D	136853	broad.mit.edu	37	chr7	76033639	76033639	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcacccagtggcaggaggaGaaggaaagacagggcttggg	17	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76033639	C	C	76033639	3	2	24	1	0	0	0	0	1	0	0	0	15255	942	33	4	1649	4	SRCRB4D	7	76033639	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	516094	76033639	83105024	970	39964											
PHTF2	57157	broad.mit.edu	37	chr7	77538339	77538339	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaatctacgattgttcttGactcctcttaccttcataga	5	10	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77538339	T	T	77538339	1	4	24	0	1	0	0	0	0	0	0	0	11958	1305	45	3		3	PHTF2	7	77538339	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1504700	77538339	81600324	971	39965											
HGF	3082	broad.mit.edu	37	chr7	81355281	81355281	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttggatcagtggtaaaacAccagggtgattcagacccat	11	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81355281	T	T	81355281	3	4	24	1	0	0	0	0	1	0	0	0	7152	159	6	5	1133	5	HGF	7	81355281	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	3816942	81355281	77783382	972	39966											
CACNA2D1	781	broad.mit.edu	37	chr7	81579550	81579550	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgacatgcagccagtgGgtgccttaggagtctgcgcc	13	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81579550	T	T	81579550	1	4	24	0	1	0	0	0	0	0	0	0	2574	1247	43	2		2	CACNA2D1	7	81579550	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	224269	81579550	77559113	973	39967											
CACNA2D1	781	broad.mit.edu	37	chr7	81637025	81637025	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttattttcaaattggccGgttatgttgaagaccggaag	11	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81637025	T	T	81637025	2	4	24	1	0	0	0	0	0	0	0	1	2574	1103	39	1		1	CACNA2D1	7	81637025	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	57475	81637025	77501638	974	39968											
PCLO	27445	broad.mit.edu	37	chr7	82579536	82579536	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccttctcctactcacataGctccgatctgtggcatcttc	5	16	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82579536	C	C	82579536	3	2	24	1	0	0	0	0	1	0	0	0	11677	962	34	4	5157	4	PCLO	7	82579536	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	942511	82579536	76559127	975	39969											
PCLO	27445	broad.mit.edu	37	chr7	82584457	82584457	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctttttcaaacacttcatCtcgttcatttgcagctggaa	5	11	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82584457	A	A	82584457	3	1	24	1	0	0	0	0	1	0	0	0	11677	913	32	3	9717	3	PCLO	7	82584457	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	4921	82584457	76554206	976	39970											
SEMA3D	223117	broad.mit.edu	37	chr7	84671660	84671660	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaattctaccactcactaAaactggtggctattacaggt	6	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84671660	C	C	84671660	1	2	24	0	1	0	0	0	0	0	0	0	14140	29	1	5		5	SEMA3D	7	84671660	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2087203	84671660	74467003	977	39971											
SEMA3D	223117	broad.mit.edu	37	chr7	84702466	84702466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatattatcatttatgccaCctgttttccaagtagatcaa	4	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84702466	A	A	84702466	1	1	24	0	1	0	0	0	0	0	0	0	14140	522	18	3		3	SEMA3D	7	84702466	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	30806	84702466	74436197	978	39972											
GRM3	2913	broad.mit.edu	37	chr7	86394889	86394889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatcccacttctcattgCaggggtcattggtggctctt	9	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86394889	A	A	86394889	3	1	24	1	0	0	0	0	1	0	0	0	6864	710	25	3	430	3	GRM3	7	86394889	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1692423	86394889	72743774	979	39973											
ABCB1	5243	broad.mit.edu	37	chr7	87190635	87190635	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagttctaattgctgccaaGacctcttcagctactgctcc	6	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87190635	T	T	87190635	2	4	24	1	0	0	0	0	0	0	0	1	40	929	33	3		3	ABCB1	7	87190635	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	795746	87190635	71948028	980	39974											
DBF4	10926	broad.mit.edu	37	chr7	87514502	87514502	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaaatatgctttgagactCagaagggctatatcctgaag	9	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87514502	T	T	87514502	1	4	24	0	1	0	0	0	0	0	0	0	4281	841	29	4		4	DBF4	7	87514502	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	323867	87514502	71624161	981	39975											
MGC26647	219557	broad.mit.edu	37	chr7	88423952	88423952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtagagagtgtcgctggagGactcgaggatatgcagaatg	16	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88423952	A	A	88423952	3	1	24	1	0	0	0	0	1	0	0	0	9643	1174	41	4	460	4	MGC26647	7	88423952	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	909450	88423952	70714711	982	39976											
ZNF804B	219578	broad.mit.edu	37	chr7	88965810	88965810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcagcatatgcagaagCaactcctatcaaagcatctt	6	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88965810	A	A	88965810	3	1	24	1	0	0	0	0	1	0	0	0	18300	711	25	3	3528	3	ZNF804B	7	88965810	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	541858	88965810	70172853	983	39977											
FZD1	8321	broad.mit.edu	37	chr7	90895652	90895652	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttaacaacgtggacgCgctgcgtggcttcgtgctgg	17	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90895652	T	T	90895652	3	4	24	1	0	0	0	0	1	0	0	0	6188	768	27	4	1459	4	FZD1	7	90895652	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1929842	90895652	68243011	984	39978											
AKAP9	10142	broad.mit.edu	37	chr7	91736614	91736614	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggttactttaggtgcagaAaagactgactcattttatca	9	6	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91736614	T	T	91736614	3	4	24	1	0	0	0	0	1	0	0	0	459	11	1	5	11614	5	AKAP9	7	91736614	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	840962	91736614	67402049	985	39979											
SAMD9L	219285	broad.mit.edu	37	chr7	92761288	92761288	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctatctgctctcagagcttCtagctttttcctgcaattct	5	13	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92761288	T	T	92761288	3	4	24	1	0	0	0	0	1	0	0	0	13938	922	32	4	761	4	SAMD9L	7	92761288	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1024674	92761288	66377375	986	39980											
CALCR	799	broad.mit.edu	37	chr7	93098112	93098112	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaaatagtacagaacatAtgcattctggaacaacaaaa	6	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93098112	G	G	93098112	3	3	24	1	0	0	0	0	1	0	0	0	2605	449	16	5	1072	5	CALCR	7	93098112	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	336824	93098112	66040551	987	39981											
COL1A2	1278	broad.mit.edu	37	chr7	94028386	94028386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccggagatagaggaccacGtggagaaagggtgtgtaatt	16	5	0	3	rs139528613	byFrequency;by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94028386	T	T	94028386	3	4	24	1	0	0	0	0	1	0	0	0	3710	1145	40	3	136	3	COL1A2	7	94028386	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	930274	94028386	65110277	988	39982											
COL1A2	1278	broad.mit.edu	37	chr7	94040229	94040229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggttctcgtggtcttcctgGagctgatggcagagctggcg	16	9	2	2	rs72658109		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94040229	T	T	94040229	3	4	24	1	0	0	0	0	1	0	0	0	3710	1174	41	3	1312	3	COL1A2	7	94040229	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	11843	94040229	65098434	989	39983											
PEG10	23089	broad.mit.edu	37	chr7	94293376	94293376	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagaggttgccaaacgcAagatcagacgcctgcgccaa	13	12	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94293376	T	T	94293376	4	4	24	1	0	0	0	0	0	1	0	0	11813	131	5	5	742	5	PEG10	7	94293376	Nonsense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	253147	94293376	64845287	990	39984											
PON1	5444	broad.mit.edu	37	chr7	94978134	94978134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgtactgggaagagcccCtatatctattccatttttct	6	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94978134	A	A	94978134	1	1	24	0	1	0	0	0	0	0	0	0	12343	696	24	2		2	PON1	7	94978134	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	684758	94978134	64160529	991	39985											
PON1	5444	broad.mit.edu	37	chr7	94979582	94979582	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaactgctccaaagcacagGatccccttactccaccaatt	5	15	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94979582	A	A	94979582	1	1	24	0	1	0	0	0	0	0	0	0	12343	1189	41	4		4	PON1	7	94979582	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1448	94979582	64159081	992	39986											
DYNC1I1	1780	broad.mit.edu	37	chr7	95657491	95657491	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccttttccctgacagtcctCtgtgatgtcggtctgcttcg	9	13	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95657491	A	A	95657491	3	1	24	1	0	0	0	0	1	0	0	0	4882	913	32	3	1063	3	DYNC1I1	7	95657491	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	677909	95657491	63481172	993	39987											
LMTK2	22853	broad.mit.edu	37	chr7	97833440	97833440	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggttctccatctctccCgccaacattgccagcttttc	5	18	2	0	rs137912661		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97833440	A	A	97833440	2	1	24	1	0	0	0	0	0	0	0	1	8933	639	23	1		1	LMTK2	7	97833440	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2175949	97833440	61305223	994	39988											
TRRAP	8295	broad.mit.edu	37	chr7	98515286	98515286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaccacatccagccggtgcGcgcagagctcatgcaggtag	13	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98515286	T	T	98515286	3	4	24	1	0	0	0	0	1	0	0	0	16726	1087	38	3	2680	3	TRRAP	7	98515286	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	681846	98515286	60623377	995	39989											
CYP3A4	1576	broad.mit.edu	37	chr7	99363898	99363898	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatgtgtcgttctgctatgTggcagaaattctcatcatcc	8	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99363898	A	A	99363898	1	1	24	0	1	0	0	0	0	0	0	0	4211	1711	59	5		5	CYP3A4	7	99363898	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	848612	99363898	59774765	996	39990											
CYP3A43	64816	broad.mit.edu	37	chr7	99457447	99457447	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaatatatttcctctccTttcagctctgtctgatctgg	5	11	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99457447	C	C	99457447	1	2	24	0	1	0	0	0	0	0	0	0	4212	1624	56	5		5	CYP3A43	7	99457447	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	93549	99457447	59681216	997	39991											
TRIM4	89122	broad.mit.edu	37	chr7	99490096	99490096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattcccatgacgtcctccCgacacaccccaacagcaacc	4	19	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99490096	A	A	99490096	3	1	24	1	0	0	0	0	1	0	0	0	16638	652	23	1	313	1	TRIM4	7	99490096	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	32649	99490096	59648567	998	39992											
GAL3ST4	79690	broad.mit.edu	37	chr7	99764020	99764020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctatgtccaactttaggGtgagatgatgcctggggagc	13	10	0	2	rs34947102		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99764020	T	T	99764020	1	4	24	0	1	0	0	0	0	0	0	0	6262	1276	44	3		3	GAL3ST4	7	99764020	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	273924	99764020	59374643	999	39993											
PCOLCE	5118	broad.mit.edu	37	chr7	100205094	100205094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcacccacctgcccaaaGcagtgccgccggacaggcac	11	17	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100205094	T	T	100205094	3	4	24	1	0	0	0	0	1	0	0	0	11688	962	34	3	986	3	PCOLCE	7	100205094	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	441074	100205094	58933569	1000	39994											
SLC12A9	56996	broad.mit.edu	37	chr7	100459533	100459533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtcaccctgggagacctcGgtgagctgccctcccactca	10	17	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100459533	T	T	100459533	3	4	24	1	0	0	0	0	1	0	0	0	14503	1130	39	1	1753	1	SLC12A9	7	100459533	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	254439	100459533	58679130	1001	39995											
TRIP6	7205	broad.mit.edu	37	chr7	100468219	100468219	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgtggtggctgcggagaaGatgtggttggggatggggct	22	3	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100468219	T	T	100468219	3	4	24	1	0	0	0	0	1	0	0	0	16684	942	33	3	875	3	TRIP6	7	100468219	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	8686	100468219	58670444	1002	39996											
MUC17	140453	broad.mit.edu	37	chr7	100675478	100675478	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcatctcctacaactgctGaaggtcccagcctgtcaaac	7	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100675478	T	T	100675478	4	4	24	1	0	0	0	0	0	1	0	0	10068	1291	45	3	791	3	MUC17	7	100675478	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	207259	100675478	58463185	1003	39997											
MUC17	140453	broad.mit.edu	37	chr7	100686002	100686002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacacctgttacgaggtttCctgagagtagcaccccttcc	8	15	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100686002	A	A	100686002	3	1	24	1	0	0	0	0	1	0	0	0	10068	855	30	3	11315	3	MUC17	7	100686002	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	10524	100686002	58452661	1004	39998											
PSMC2	5701	broad.mit.edu	37	chr7	103008535	103008535	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtgaaaactttaaattGgaatcctaaccttatataga	5	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103008535	T	T	103008535	1	4	24	0	1	0	0	0	0	0	0	0	12792	1363	47	2		2	PSMC2	7	103008535	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	2322533	103008535	56130128	1005	39999											
RELN	5649	broad.mit.edu	37	chr7	103185752	103185752	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtcactggctgagagccGgcagggtaaaatccctggta	13	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103185752	A	A	103185752	2	1	24	1	0	0	0	0	0	0	0	1	13328	1103	39	4		4	RELN	7	103185752	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	177217	103185752	55952911	1006	40000											
RELN	5649	broad.mit.edu	37	chr7	103212666	103212666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtttgatgcaggtaatgCctgaagttttgcttccaatt	10	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103212666	A	A	103212666	3	1	24	1	0	0	0	0	1	0	0	0	13328	739	26	3	5969	3	RELN	7	103212666	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	26914	103212666	55925997	1007	40001											
RELN	5649	broad.mit.edu	37	chr7	103294530	103294530	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctatttgccacacagactgGcatgtgtaccttatatgagg	9	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103294530	C	C	103294530	1	2	24	0	1	0	0	0	0	0	0	0	13328	1218	42	4		4	RELN	7	103294530	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	81864	103294530	55844133	1008	40002											
RELN	5649	broad.mit.edu	37	chr7	103629477	103629477	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggccagggttgtcatgGttcttgtttccaaggcccct	13	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103629477	A	A	103629477	1	1	24	0	1	0	0	0	0	0	0	0	13328	1276	44	4		4	RELN	7	103629477	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	334947	103629477	55509186	1009	40003											
CDHR3	222256	broad.mit.edu	37	chr7	105664968	105664968	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattggccaaagccatccacAgacactgcccctgcaagact	7	15	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105664968	G	G	105664968	3	3	24	1	0	0	0	0	1	0	0	0	3150	180	7	5	2276	5	CDHR3	7	105664968	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2035491	105664968	53473695	1010	40004											
SLC26A3	1811	broad.mit.edu	37	chr7	107431829	107431829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttgggaggccgaggcgGgtggatcacctgaggtcggg	19	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107431829	T	T	107431829	1	4	24	0	1	0	0	0	0	0	0	0	14632	1247	43	2		2	SLC26A3	7	107431829	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1766861	107431829	51706834	1011	40005											
LAMB1	3912	broad.mit.edu	37	chr7	107580394	107580394	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttaactcacaatattttttCagctttatgagtaattcctc	4	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107580394	T	T	107580394	1	4	24	0	1	0	0	0	0	0	0	0	8682	841	29	4		4	LAMB1	7	107580394	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	148565	107580394	51558269	1012	40006											
LAMB1	3912	broad.mit.edu	37	chr7	107600208	107600208	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttcttccaaccacgttggGccggcactggcactggcctc	12	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107600208	C	C	107600208	3	2	24	1	0	0	0	0	1	0	0	0	8682	1203	42	4	3038	4	LAMB1	7	107600208	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	19814	107600208	51538455	1013	40007											
LAMB4	22798	broad.mit.edu	37	chr7	107744882	107744882	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacagaagtgaacgaagtGtttcttaaataaggaaatgc	9	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107744882	A	A	107744882	1	1	24	0	1	0	0	0	0	0	0	0	8685	1392	48	4		4	LAMB4	7	107744882	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	144674	107744882	51393781	1014	40008											
PNPLA8	50640	broad.mit.edu	37	chr7	108138060	108138060	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaatgacaattcctgttTaaagaaaaaataatttaagc	4	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108138060	A	A	108138060	1	1	24	0	1	0	0	0	0	0	0	0	12266	1769	61	5		5	PNPLA8	7	108138060	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	393178	108138060	51000603	1015	40009											
IMMP2L	83943	broad.mit.edu	37	chr7	110526649	110526649	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagataaaagatgacttacCggcccaaaagaattactgtc	8	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110526649	A	A	110526649	2	1	24	1	0	0	0	0	0	0	0	1	7787	666	23	1		1	IMMP2L	7	110526649	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2388589	110526649	48612014	1016	40010											
LRRN3	54674	broad.mit.edu	37	chr7	110764558	110764558	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataccatctgatgtcaaggTatataatcttactcatctga	5	8	5	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110764558	A	A	110764558	3	1	24	1	0	0	0	0	1	0	0	0	9123	1638	57	5	1732	5	LRRN3	7	110764558	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	237909	110764558	48374105	1017	40011											
FOXP2	93986	broad.mit.edu	37	chr7	114302190	114302190	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttaaaggagcagtatGgactgtggatgaagtagaat	13	2	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114302190	A	A	114302190	4	1	24	1	0	0	0	0	0	1	0	0	6087	1357	47	4	1935	4	FOXP2	7	114302190	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3537632	114302190	44836473	1018	40012											
ST7	7982	broad.mit.edu	37	chr7	116862156	116862156	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccttggggaatggatgGggaaagccaagggcataaaa	17	5	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116862156	A	A	116862156	1	1	24	0	1	0	0	0	0	0	0	0	15347	1247	43	4		4	ST7	7	116862156	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2559966	116862156	42276507	1019	40013											
ST7	7982	broad.mit.edu	37	chr7	116869781	116869781	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatagtcttgaacaaggtttCtgctgacttctgtgtctgtc	9	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116869781	T	T	116869781	1	4	24	0	1	0	0	0	0	0	0	0	15347	928	32	4		4	ST7	7	116869781	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	7625	116869781	42268882	1020	40014											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432814	117432814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgctcaagggcttgtaGctgaagcttctccatttcca	8	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117432814	T	T	117432814	3	4	24	1	0	0	0	0	1	0	0	0	4079	962	34	3	4635	3	CTTNBP2	7	117432814	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	563033	117432814	41705849	1021	40015											
C7orf58	79974	broad.mit.edu	37	chr7	120655887	120655887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgctggcctagggccgGggctactagaacaaggtcag	14	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120655887	T	T	120655887	3	4	24	1	0	0	0	0	1	0	0	0	2430	1232	43	2	424	2	C7orf58	7	120655887	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3223073	120655887	38482776	1022	40016											
C7orf58	79974	broad.mit.edu	37	chr7	120767242	120767242	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacactttcaattttctcttCcctaatgaatcatcactttc	2	12	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120767242	T	T	120767242	2	4	24	1	0	0	0	0	0	0	0	1	2430	854	30	4		4	C7orf58	7	120767242	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	111355	120767242	38371421	1023	40017											
FAM3C	10447	broad.mit.edu	37	chr7	121011399	121011399	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcccaccacgttggctgctCcacttgccattttaaaagca	7	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121011399	G	G	121011399	3	3	24	1	0	0	0	0	1	0	0	0	5609	855	30	4	480	4	FAM3C	7	121011399	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	244157	121011399	38127264	1024	40018											
PTPRZ1	5803	broad.mit.edu	37	chr7	121623630	121623630	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttttgattaaatacataaCaaagcatgtgtctctgtttc	6	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121623630	T	T	121623630	1	4	24	0	1	0	0	0	0	0	0	0	12922	493	17	4		4	PTPRZ1	7	121623630	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	612231	121623630	37515033	1025	40019											
TAS2R16	50833	broad.mit.edu	37	chr7	122635151	122635151	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaccaatgcaactgtatgagCctggaactgatactgatgaa	9	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122635151	G	G	122635151	3	3	24	1	0	0	0	0	1	0	0	0	15688	739	26	4	341	4	TAS2R16	7	122635151	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1011521	122635151	36503512	1026	40020											
SLC13A1	6561	broad.mit.edu	37	chr7	122809071	122809071	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagatactgagaactaTagagggaagaaagttaaatt	10	2	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122809071	C	C	122809071	1	2	24	0	1	0	0	0	0	0	0	0	14504	1421	49	5		5	SLC13A1	7	122809071	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	173920	122809071	36329592	1027	40021											
IQUB	154865	broad.mit.edu	37	chr7	123109248	123109248	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaactctacccccaaaCtaagagaaagttaacatacc	5	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123109248	G	G	123109248	1	3	24	0	1	0	0	0	0	0	0	0	7890	580	20	4		4	IQUB	7	123109248	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	300177	123109248	36029415	1028	40022											
SPAM1	6677	broad.mit.edu	37	chr7	123595019	123595019	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagcactttcatttcattttTatctgctaactctttctgtc	3	10	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123595019	A	A	123595019	1	1	24	0	1	0	0	0	0	0	0	0	15102	1769	61	5		5	SPAM1	7	123595019	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	485771	123595019	35543644	1029	40023											
FLNC	2318	broad.mit.edu	37	chr7	128497168	128497168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttgctacctctggcccCcaggtgtgtcatcagagttc	10	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128497168	A	A	128497168	1	1	24	0	1	0	0	0	0	0	0	0	5993	638	22	2		2	FLNC	7	128497168	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4902149	128497168	30641495	1030	40024											
FAM40B	57464	broad.mit.edu	37	chr7	129083837	129083837	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttaaggatctcccgaaTgtgactgttctgtctttcct	7	10	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129083837	C	C	129083837	1	2	24	0	1	0	0	0	0	0	0	0	5612	1479	51	5		5	FAM40B	7	129083837	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	586669	129083837	30054826	1031	40025											
TMEM209	84928	broad.mit.edu	37	chr7	129825327	129825327	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaccctcaaggagattctCttctccccaacataattttc	3	15	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129825327	G	G	129825327	1	3	24	0	1	0	0	0	0	0	0	0	16257	928	32	4		4	TMEM209	7	129825327	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	741490	129825327	29313336	1032	40026											
TMEM209	84928	broad.mit.edu	37	chr7	129847657	129847657	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgtcataataggttgcCaaggaaattgtcatacatca	8	6	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129847657	A	A	129847657	1	1	24	0	1	0	0	0	0	0	0	0	16257	609	21	2		2	TMEM209	7	129847657	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	22330	129847657	29291006	1033	40027											
CPA2	1358	broad.mit.edu	37	chr7	129929431	129929431	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaagcattgactggtcCtatgattatggcatcaagta	12	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129929431	T	T	129929431	2	4	24	1	0	0	0	0	0	0	0	1	3822	668	24	4		4	CPA2	7	129929431	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	81774	129929431	29209232	1034	40028											
PLXNA4	91584	broad.mit.edu	37	chr7	131829860	131829860	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggctcccgatgtgcccccTgccctcccttcactcaccaa	7	20	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131829860	C	C	131829860	1	2	24	0	1	0	0	0	0	0	0	0	12217	1595	55	5		5	PLXNA4	7	131829860	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1900429	131829860	27308803	1035	40029											
PLXNA4	91584	broad.mit.edu	37	chr7	131848872	131848872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagcccgcctgtcaaagCcccaggggaaacagatgggt	14	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131848872	A	A	131848872	1	1	24	0	1	0	0	0	0	0	0	0	12217	754	26	3		3	PLXNA4	7	131848872	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	19012	131848872	27289791	1036	40030											
PLXNA4	91584	broad.mit.edu	37	chr7	132192628	132192628	+	Frame_Shift_Del	DEL	C	-	-													ctcacgagcttggatgtataCacctgctccttggtggtgga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132192628	-	-	132192628	7	5	24	1	0	1	0	1	0	0	0	0	12217	465	17	0	5297	0	PLXNA4	7	132192628	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	343756	132192628	26946035	1037	40031											
AKR1B10	57016	broad.mit.edu	37	chr7	134225786	134225786	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgtttttgttttttgTtctttcctgcagatcctctc	5	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134225786	C	C	134225786	1	2	24	0	1	0	0	0	0	0	0	0	467	1740	60	5		5	AKR1B10	7	134225786	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2033158	134225786	24912877	1038	40032											
WDR91	29062	broad.mit.edu	37	chr7	134879797	134879797	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacactttgatgaccccatcTacgtctaagctggcgactct	7	14	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134879797	A	A	134879797	2	1	24	1	0	0	0	0	0	0	0	1	17465	1509	53	5		5	WDR91	7	134879797	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	654011	134879797	24258866	1039	40033											
SLC13A4	26266	broad.mit.edu	37	chr7	135390248	135390248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgagcttgggtggtacAtctcaaagagctgtttatgg	15	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135390248	T	T	135390248	1	4	24	0	1	0	0	0	0	0	0	0	14507	232	8	5		5	SLC13A4	7	135390248	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	510451	135390248	23748415	1040	40034											
FAM180A	389558	broad.mit.edu	37	chr7	135419169	135419169	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagggaggcagctgccagaaGagctttggaactcaagagag	15	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135419169	T	T	135419169	1	4	24	0	1	0	0	0	0	0	0	0	5552	957	33	3		3	FAM180A	7	135419169	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	28921	135419169	23719494	1041	40035											
CHRM2	1129	broad.mit.edu	37	chr7	136699793	136699793	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagaccgtcaacaattacTttttattcagcttggcctgt	6	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136699793	C	C	136699793	3	2	24	1	0	0	0	0	1	0	0	0	3408	1609	56	5	183	5	CHRM2	7	136699793	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1280624	136699793	22438870	1042	40036											
CHRM2	1129	broad.mit.edu	37	chr7	136700022	136700022	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctacccagtcaagcggaccaCaaaaatggcaggtatgatga	10	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136700022	G	G	136700022	3	3	24	1	0	0	0	0	1	0	0	0	3408	478	17	4	412	4	CHRM2	7	136700022	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	229	136700022	22438641	1043	40037											
CHRM2	1129	broad.mit.edu	37	chr7	136700794	136700794	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatcttggctattctgttGgctttcatcatcacttgggc	8	10	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700794	T	T	136700794	3	4	24	1	0	0	0	0	1	0	0	0	3408	1339	47	2	1184	2	CHRM2	7	136700794	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	772	136700794	22437869	1044	40038											
CHRM2	1129	broad.mit.edu	37	chr7	136700962	136700962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgccaccttcaagaagacCtttaaacaccttctcatgtg	5	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136700962	A	A	136700962	2	1	24	1	0	0	0	0	0	0	0	1	3408	668	24	2		2	CHRM2	7	136700962	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	168	136700962	22437701	1045	40039											
DGKI	9162	broad.mit.edu	37	chr7	137172361	137172361	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctaaataaactcacctcctGtaggcggtctatgtacatac	7	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137172361	C	C	137172361	3	2	24	1	0	0	0	0	1	0	0	0	4511	1386	48	4	868	4	DGKI	7	137172361	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	471399	137172361	21966302	1046	40040											
DGKI	9162	broad.mit.edu	37	chr7	137263044	137263044	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacattttatttcgaaaaCgactgttgaatttctctgga	7	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137263044	T	T	137263044	3	4	24	1	0	0	0	0	1	0	0	0	4511	536	19	4	1603	4	DGKI	7	137263044	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	90683	137263044	21875619	1047	40041											
AKR1D1	6718	broad.mit.edu	37	chr7	137776452	137776452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgttttacaaagaaaaagGggctgccttatcgtaaaaag	10	5	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137776452	T	T	137776452	1	4	24	0	1	0	0	0	0	0	0	0	473	1247	43	2		2	AKR1D1	7	137776452	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	513408	137776452	21362211	1048	40042											
JHDM1D	80853	broad.mit.edu	37	chr7	139791672	139791672	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtggggtgaaggggcaccGagaaggaagtttcaccaact	16	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139791672	T	T	139791672	4	4	24	1	0	0	0	0	0	1	0	0	8018	1059	37	3	170	3	JHDM1D	7	139791672	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2015220	139791672	19346991	1049	40043											
WEE2	494551	broad.mit.edu	37	chr7	141423010	141423010	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagccaaaactcaaggacatCcttctacagatttcccttgg	7	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141423010	A	A	141423010	2	1	24	1	0	0	0	0	0	0	0	1	17472	845	30	3		3	WEE2	7	141423010	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1631338	141423010	17715653	1050	40044											
CLEC5A	23601	broad.mit.edu	37	chr7	141631528	141631528	+	Frame_Shift_Del	DEL	G	-	-													atgttcacgtacttgccattGaacacagagttgttgatcca							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141631528	-	-	141631528	7	5	24	1	0	1	0	1	0	0	0	0	3551	1281	45	0	130	0	CLEC5A	7	141631528	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	208518	141631528	17507135	1051	40045											
MGAM	8972	broad.mit.edu	37	chr7	141750292	141750292	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttctgaacacagttttTaaatgcctgtgtgtttttat	8	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141750292	A	A	141750292	1	1	24	0	1	0	0	0	0	0	0	0	9634	1769	61	5		5	MGAM	7	141750292	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	118764	141750292	17388371	1052	40046											
TRYX3	136541	broad.mit.edu	37	chr7	141957548	141957548	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgatgttgaaagcccagtTtagctccagtctctggaaaa	10	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141957548	G	G	141957548	1	3	24	0	1	0	0	0	0	0	0	0	16729	1856	64	5		5	TRYX3	7	141957548	5'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	207256	141957548	17181115	1053	40047											
PRSS1	5644	broad.mit.edu	37	chr7	142457402	142457402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgccctgcctcaggccCcaaccacccccccgttcctg	6	22	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142457402	A	A	142457402	1	1	24	0	1	0	0	0	0	0	0	0	12720	638	22	2		2	PRSS1	7	142457402	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	499854	142457402	16681261	1054	40048											
TRPV5	56302	broad.mit.edu	37	chr7	142625435	142625435	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacccttgagacagacagaCagtgggaaccagcaaacctc	9	13	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142625435	G	G	142625435	1	3	24	0	1	0	0	0	0	0	0	0	16724	493	17	4		4	TRPV5	7	142625435	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	168033	142625435	16513228	1055	40049											
TRPV5	56302	broad.mit.edu	37	chr7	142626722	142626722	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagttctctcagggacacagCatcccccaccatccctctca	5	19	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142626722	G	G	142626722	1	3	24	0	1	0	0	0	0	0	0	0	16724	725	25	4		4	TRPV5	7	142626722	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1287	142626722	16511941	1056	40050											
TRPV5	56302	broad.mit.edu	37	chr7	142630652	142630652	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagatggggtctatttggGgctgggactctgagtttatc	15	5	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142630652	T	T	142630652	1	4	24	0	1	0	0	0	0	0	0	0	16724	1247	43	2		2	TRPV5	7	142630652	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	3930	142630652	16508011	1057	40051											
OR6V1	346517	broad.mit.edu	37	chr7	142749623	142749623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgtacttcttcctgggCaatttttccctgctggagat	8	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142749623	A	A	142749623	2	1	24	1	0	0	0	0	0	0	0	1	11305	697	25	3		3	OR6V1	7	142749623	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	118971	142749623	16389040	1058	40052											
CASP2	835	broad.mit.edu	37	chr7	142988812	142988812	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaaaagagagaagataaAttgatcatggggtgggaata	14	2	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142988812	C	C	142988812	1	2	24	0	1	0	0	0	0	0	0	0	2697	116	4	5		5	CASP2	7	142988812	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	239189	142988812	16149851	1059	40053											
CASP2	835	broad.mit.edu	37	chr7	142989412	142989412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaaagtgggcagtttcaGccagaatgtggaactcctca	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142989412	T	T	142989412	3	4	24	1	0	0	0	0	1	0	0	0	2697	971	34	3	255	3	CASP2	7	142989412	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	600	142989412	16149251	1060	40054											
CLCN1	1180	broad.mit.edu	37	chr7	143016890	143016890	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattctcagacagggagcagGacatagggatgcccaagaag	13	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143016890	A	A	143016890	3	1	24	1	0	0	0	0	1	0	0	0	3493	1174	41	4	229	4	CLCN1	7	143016890	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	27478	143016890	16121773	1061	40055											
CLCN1	1180	broad.mit.edu	37	chr7	143018980	143018980	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccagagctgggaggggcCctcaggagccagggtggcac	18	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143018980	T	T	143018980	1	4	24	0	1	0	0	0	0	0	0	0	3493	638	22	4		4	CLCN1	7	143018980	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2090	143018980	16119683	1062	40056											
FAM115C	285966	broad.mit.edu	37	chr7	143421773	143421773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggaatgtatggacagccCtggaaacatatctacaggta	10	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143421773	A	A	143421773	3	1	24	1	0	0	0	0	1	0	0	0	5452	680	24	2	2829	2	FAM115C	7	143421773	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	402793	143421773	15716890	1063	40057											
OR2F2	135948	broad.mit.edu	37	chr7	143632636	143632636	+	Frame_Shift_Del	DEL	C	-	-													tgcagcccagttatttttctCcctggccttgggtgggattg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143632636	-	-	143632636	7	5	24	1	0	1	0	1	0	0	0	0	11091	855	30	0	313	0	OR2F2	7	143632636	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	210863	143632636	15506027	1064	40058											
TPK1	27010	broad.mit.edu	37	chr7	144150703	144150703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtcacaacaccagaccCgtcgtaggtattggaagtac	9	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144150703	A	A	144150703	3	1	24	1	0	0	0	0	1	0	0	0	16528	652	23	1	68	1	TPK1	7	144150703	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	518067	144150703	14987960	1065	40059											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471471	146471471	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccaagataaacaagagagGaggtaagccaaattttgatt	10	5	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146471471	A	A	146471471	3	1	24	1	0	0	0	0	1	0	0	0	3679	1174	41	4	212	4	CNTNAP2	7	146471471	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2320768	146471471	12667192	1066	40060											
ZNF398	57541	broad.mit.edu	37	chr7	148875854	148875854	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatgctttttcagatgtggCtttcaaaagccagcagtcta	10	8	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148875854	G	G	148875854	3	3	24	1	0	0	0	0	1	0	0	0	18012	797	28	4	912	4	ZNF398	7	148875854	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2404383	148875854	10262809	1067	40061											
SSPO	23145	broad.mit.edu	37	chr7	149490435	149490435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggggtgtgagcatcagGgccaggtccaccgtgtcggg	19	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149490435	T	T	149490435	3	4	24	1	0	0	0	0	1	0	0	0	15307	1232	43	2	6061	2	SSPO	7	149490435	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	614581	149490435	9648228	1068	40062											
SSPO	23145	broad.mit.edu	37	chr7	149490782	149490782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctctgagagggaaccagGggcactgagcgggggtggct	20	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149490782	T	T	149490782	1	4	24	0	1	0	0	0	0	0	0	0	15307	1247	43	2		2	SSPO	7	149490782	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	347	149490782	9647881	1069	40063											
GIMAP4	55303	broad.mit.edu	37	chr7	150269586	150269586	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcctgaaaatgtttggagAgagggctagaagtttcatga	13	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150269586	G	G	150269586	3	3	24	1	0	0	0	0	1	0	0	0	6445	304	11	5	434	5	GIMAP4	7	150269586	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	778804	150269586	8869077	1070	40064											
ABP1	26	broad.mit.edu	37	chr7	150558147	150558147	+	Frame_Shift_Del	DEL	C	-	-													ctccggccattcaacttcttCccagaggacccctccctggc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150558147	-	-	150558147	7	5	24	1	0	1	0	1	0	0	0	0	98	854	30	0	2120	0	ABP1	7	150558147	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	288561	150558147	8580516	1071	40065											
SLC4A2	6522	broad.mit.edu	37	chr7	150769255	150769255	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgccgagagctgggccagGagggccgaggtctcagggct	18	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150769255	A	A	150769255	1	1	24	0	1	0	0	0	0	0	0	0	14768	1189	41	4		4	SLC4A2	7	150769255	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	211108	150769255	8369408	1072	40066											
ABCF2	10061	broad.mit.edu	37	chr7	150921270	150921270	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaccactagttcttccAccccagtcaaactgggacct	5	16	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150921270	C	C	150921270	1	2	24	0	1	0	0	0	0	0	0	0	66	174	6	5		5	ABCF2	7	150921270	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	152015	150921270	8217393	1073	40067											
MLL3	58508	broad.mit.edu	37	chr7	151871326	151871326	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatctgtaattgcatcaaaAtctagaaaagaaatataaag	7	4	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151871326	C	C	151871326	3	2	24	1	0	0	0	0	1	0	0	0	9715	115	4	5	5555	5	MLL3	7	151871326	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	950056	151871326	7267337	1074	40068											
DPP6	1804	broad.mit.edu	37	chr7	154519683	154519683	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttctttttcatttttctttGactttaactgtaaattaaac	3	6	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154519683	A	A	154519683	1	1	24	0	1	0	0	0	0	0	0	0	4770	1305	45	4		4	DPP6	7	154519683	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2648357	154519683	4618980	1075	40069											
EN2	2020	broad.mit.edu	37	chr7	155255288	155255288	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccaagatcaagaaggccaCgggcaacaagaacacgctgg	12	12	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155255288	T	T	155255288	3	4	24	1	0	0	0	0	1	0	0	0	5152	536	19	4	914	4	EN2	7	155255288	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	735605	155255288	3883375	1076	40070											
PTPRN2	5799	broad.mit.edu	37	chr7	157364164	157364165	+	Missense_Mutation	DNP	CC	AA	AA													attattggacaagaacggccCctgtagcacttgtttacttt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	157364165	AA	AA	157364164	3	1	24	1	0	0	0	0	1	0	0	0	12916	622	22	2	258	2	PTPRN2	7	157364164	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	2108876	157364164	1774499	1077	40071											
PTPRN2	5799	broad.mit.edu	37	chr7	157985171	157985171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacctcctctcgctgccaaCgctgtgttttgagggcctga	11	13	1	2	rs140977880	byFrequency;by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157985171	A	A	157985171	3	1	24	1	0	0	0	0	1	0	0	0	12916	536	19	3	2726	3	PTPRN2	7	157985171	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	621007	157985171	1153492	1078	40072											
WDR60	55112	broad.mit.edu	37	chr7	158711520	158711520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccctgtattttagtgaCagctcatctcagctgaacac	9	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158711520	A	A	158711520	3	1	24	1	0	0	0	0	1	0	0	0	17438	477	17	3	1939	3	WDR60	7	158711520	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	726349	158711520	427143	1079	40073											
RP1L1	94137	broad.mit.edu	37	chr8	10470762	10470762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcagggcccaccgggggGttgctaggaccaggcctttc	17	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10470762	T	T	10470762	3	4	24	1	0	0	0	0	1	0	0	0	13644	1252	44	3	6360	3	RP1L1	8	10470762	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08		10470762	135893260	1080	40074											
XKR6	286046	broad.mit.edu	37	chr8	10755822	10755822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggctcaacatcggggggCaaagggatgccccagagcag	16	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10755822	A	A	10755822	3	1	24	1	0	0	0	0	1	0	0	0	17562	709	25	3	363	3	XKR6	8	10755822	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	285060	10755822	135608200	1081	40075											
DEFB136	613210	broad.mit.edu	37	chr8	11831804	11831804	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggcattggaggggagatAggaatctgggtggctgcacg	19	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11831804	T	T	11831804	1	4	24	0	1	0	0	0	0	0	0	0	4460	435	15	5		5	DEFB136	8	11831804	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1075982	11831804	134532218	1082	40076											
TUSC3	7991	broad.mit.edu	37	chr8	15615367	15615367	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaactctataacctcaggcAagtcttttaatcttctctga	4	10	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15615367	T	T	15615367	1	4	24	0	1	0	0	0	0	0	0	0	16904	145	5	5		5	TUSC3	8	15615367	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	3783563	15615367	130748655	1083	40077											
PCM1	5108	broad.mit.edu	37	chr8	17827249	17827249	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttcctctattggagcagaGaaaccaaggtactgattgta	10	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17827249	A	A	17827249	2	1	24	1	0	0	0	0	0	0	0	1	11678	933	33	4		4	PCM1	8	17827249	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2211882	17827249	128536773	1084	40078											
NAT1	9	broad.mit.edu	37	chr8	18079725	18079725	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggcttagaggccatttttGatcaagttgtgagaagaaat	11	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18079725	T	T	18079725	3	4	24	1	0	0	0	0	1	0	0	0	10267	1290	45	3	365	3	NAT1	8	18079725	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	252476	18079725	128284297	1085	40079											
PSD3	23362	broad.mit.edu	37	chr8	18656784	18656784	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgacatgttttggatctaaGtttcacaaatccacacttac	5	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18656784	C	C	18656784	1	2	24	0	1	0	0	0	0	0	0	0	12754	1044	36	4		4	PSD3	8	18656784	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	577059	18656784	127707238	1086	40080											
ATP6V1B2	526	broad.mit.edu	37	chr8	20068141	20068141	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgttgtactggccgaagaCttccttgatatcatgggtag	11	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20068141	T	T	20068141	2	4	24	1	0	0	0	0	0	0	0	1	1183	564	20	4		4	ATP6V1B2	8	20068141	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1411357	20068141	126295881	1087	40081											
EPB49	2039	broad.mit.edu	37	chr8	21938046	21938046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagccggggtctgggctGtgggcaggggtctggtgagg	24	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21938046	T	T	21938046	1	4	24	0	1	0	0	0	0	0	0	0	5201	1392	48	3		3	EPB49	8	21938046	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1869905	21938046	124425976	1088	40082											
EPB49	2039	broad.mit.edu	37	chr8	21938457	21938457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaagtggaatgtgctgcGgggtcttcctggtgttgaag	17	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21938457	T	T	21938457	1	4	24	0	1	0	0	0	0	0	0	0	5201	1131	39	1		1	EPB49	8	21938457	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	411	21938457	124425565	1089	40083											
BMP1	649	broad.mit.edu	37	chr8	22051524	22051525	+	Intron	DNP	GG	AT	AT													agaggtggggcctctataggGggtgtcctcagggttcacca							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	22051525	AT	AT	22051524	1	1	24	0	1	0	0	0	0	0	0	0	1462	1247	43	4		4	BMP1	8	22051524	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	113067	22051524	124312498	1090	40084											
PEBP4	157310	broad.mit.edu	37	chr8	22570843	22570843	+	3'UTR	DEL	G	-	-													atacccacatcgtcggtggtGggcagtgtggccacatgccc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22570843	-	-	22570843	6	5	24	0	1	1	0	1	0	0	0	0	11808	1363	47	0		0	PEBP4	8	22570843	3'UTR	DEL	G	TCGA-05-4427-01A-21D-1855-08	519319	22570843	123793179	1091	40085											
ENTPD4	9583	broad.mit.edu	37	chr8	23297285	23297285	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttgaatggtgttggcAaatattctgtcttcgtatct	8	6	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23297285	C	C	23297285	3	2	24	1	0	0	0	0	1	0	0	0	5183	127	5	5	844	5	ENTPD4	8	23297285	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	726442	23297285	123066737	1092	40086											
STC1	6781	broad.mit.edu	37	chr8	23708865	23708865	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgattgggcagctggacgacCtcagtgatggcttcagggtt	15	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23708865	G	G	23708865	3	3	24	1	0	0	0	0	1	0	0	0	15393	680	24	4	310	4	STC1	8	23708865	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	411580	23708865	122655157	1093	40087											
ZNF395	55893	broad.mit.edu	37	chr8	28304794	28304794	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttctttttcttcttctgTaaattggaaagcagtgggaa	10	5	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28304794	C	C	28304794	1	2	24	0	1	0	0	0	0	0	0	0	18008	1653	57	5		5	ZNF395	8	28304794	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	4595929	28304794	118059228	1094	40088											
LEPROTL1	23484	broad.mit.edu	37	chr8	29975005	29975006	+	Intron	DNP	GG	TT	TT													acaatgaaaccaaactgaagGgatggaaacagattttctgc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	29975006	TT	TT	29975005	1	4	24	0	1	0	0	0	0	0	0	0	8805	1247	43	2		2	LEPROTL1	8	29975005	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	1670211	29975005	116389017	1095	40089											
PPP2CB	5516	broad.mit.edu	37	chr8	30657089	30657089	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctacaagaagagtcacagtCtccactgaataatatcctct	6	11	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30657089	G	G	30657089	3	3	24	1	0	0	0	0	1	0	0	0	12482	912	32	4	668	4	PPP2CB	8	30657089	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	682084	30657089	115706933	1096	40090											
TEX15	56154	broad.mit.edu	37	chr8	30702577	30702577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttaggtttaatgggccCataaggaagtttcctgtaat	10	5	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30702577	A	A	30702577	3	1	24	1	0	0	0	0	1	0	0	0	15901	594	21	2	4428	2	TEX15	8	30702577	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	45488	30702577	115661445	1097	40091											
WRN	7486	broad.mit.edu	37	chr8	30954341	30954341	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaggtaacatgggcctGctccagcaacttgaggctga	12	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30954341	T	T	30954341	2	4	24	1	0	0	0	0	0	0	0	1	17529	1306	46	3		3	WRN	8	30954341	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	251764	30954341	115409681	1098	40092											
WRN	7486	broad.mit.edu	37	chr8	31004915	31004915	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattggtagaagctaggcaGaaacatgccaataaaatgga	10	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31004915	T	T	31004915	3	4	24	1	0	0	0	0	1	0	0	0	17529	933	33	3	3609	3	WRN	8	31004915	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	50574	31004915	115359107	1099	40093											
UNC5D	137970	broad.mit.edu	37	chr8	35616772	35616772	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgagcatgtgtatccctaGataggaaatatgtaagtagc	11	5	0	2	rs144571753	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35616772	T	T	35616772	1	4	24	0	1	0	0	0	0	0	0	0	17121	957	33	3		3	UNC5D	8	35616772	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4611857	35616772	110747250	1100	40094											
UNC5D	137970	broad.mit.edu	37	chr8	35647902	35647902	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcttatttcgctacacaaAgtagcccatctgctgtcatt	5	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35647902	C	C	35647902	3	2	24	1	0	0	0	0	1	0	0	0	17121	72	3	5	2749	5	UNC5D	8	35647902	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	31130	35647902	110716120	1101	40095											
KCNU1	157855	broad.mit.edu	37	chr8	36703229	36703229	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaagcactaaagcaactAcagcttaatgggaggcccac	10	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36703229	G	G	36703229	1	3	24	0	1	0	0	0	0	0	0	0	8163	406	14	5		5	KCNU1	8	36703229	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1055327	36703229	109660793	1102	40096											
ANK1	286	broad.mit.edu	37	chr8	41545644	41545644	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtaggtgagatggacaaaGtgcttttctgcccccaattc	12	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41545644	A	A	41545644	1	1	24	0	1	0	0	0	0	0	0	0	620	1044	36	4		4	ANK1	8	41545644	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4842415	41545644	104818378	1103	40097											
HOOK3	84376	broad.mit.edu	37	chr8	42852763	42852763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatctttacaggatcaaGgctcaaaagcagaagatgta	8	6	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42852763	T	T	42852763	3	4	24	1	0	0	0	0	1	0	0	0	7351	1000	35	2	1665	2	HOOK3	8	42852763	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1307119	42852763	103511259	1104	40098											
KIAA0146	23514	broad.mit.edu	37	chr8	48626236	48626236	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaggaattggtgcttaTactttcttaactgttatact	6	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48626236	C	C	48626236	1	2	24	0	1	0	0	0	0	0	0	0	8227	1421	49	5		5	KIAA0146	8	48626236	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	5773473	48626236	97737786	1105	40099											
EFCAB1	79645	broad.mit.edu	37	chr8	49642328	49642328	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttaattccttcatcagggTcttcctcagatggctgtttg	8	10	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49642328	G	G	49642328	3	3	24	1	0	0	0	0	1	0	0	0	4973	1667	58	5	225	5	EFCAB1	8	49642328	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1016092	49642328	96721694	1106	40100											
PXDNL	137902	broad.mit.edu	37	chr8	52233380	52233380	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagtcttctttcatccaGcgctcctcggccttccttgg	9	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52233380	C	C	52233380	2	2	24	1	0	0	0	0	0	0	0	1	12956	958	34	4		4	PXDNL	8	52233380	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2591052	52233380	94130642	1107	40101											
ST18	9705	broad.mit.edu	37	chr8	53045816	53045816	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccttctgtgggaagcataGtttccagtcacgtgccccga	10	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53045816	A	A	53045816	2	1	24	1	0	0	0	0	0	0	0	1	15330	1020	36	4		4	ST18	8	53045816	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	812436	53045816	93318206	1108	40102											
ST18	9705	broad.mit.edu	37	chr8	53079702	53079702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagaccctcaactaagacCtgtggaaacggaaaacatgt	8	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53079702	A	A	53079702	1	1	24	0	1	0	0	0	0	0	0	0	15330	696	24	2		2	ST18	8	53079702	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	33886	53079702	93284320	1109	40103											
RB1CC1	9821	broad.mit.edu	37	chr8	53555178	53555178	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacacccaaatttaaaaaagTatcatgtaattaaaaaaacc	3	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53555178	A	A	53555178	1	1	24	0	1	0	0	0	0	0	0	0	13207	1653	57	5		5	RB1CC1	8	53555178	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	475476	53555178	92808844	1110	40104											
RP1	6101	broad.mit.edu	37	chr8	55540660	55540660	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctttgcctaagtgaaaaAgaagcagaacttgataagaa	10	6	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55540660	G	G	55540660	2	3	24	1	0	0	0	0	0	0	0	1	13643	69	3	5		5	RP1	8	55540660	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	1985482	55540660	90823362	1111	40105											
XKR4	114786	broad.mit.edu	37	chr8	56367337	56367337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaggtaccagcgtctttGgggcaaacatctgggcagat	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56367337	T	T	56367337	1	4	24	0	1	0	0	0	0	0	0	0	17560	1363	47	2		2	XKR4	8	56367337	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	826677	56367337	89996685	1112	40106											
CHCHD7	79145	broad.mit.edu	37	chr8	57127245	57127245	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggtaggatggtttgctttaAttttcatgagtgttaagttg	12	3	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57127245	G	G	57127245	1	3	24	0	1	0	0	0	0	0	0	0	3352	116	4	5		5	CHCHD7	8	57127245	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	759908	57127245	89236777	1113	40107											
NSMAF	8439	broad.mit.edu	37	chr8	59510518	59510518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttcaatgtaatatacaCtgtttagaacctaaacaatg	4	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59510518	A	A	59510518	1	1	24	0	1	0	0	0	0	0	0	0	10769	580	20	3		3	NSMAF	8	59510518	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2383273	59510518	86853504	1114	40108											
RAB2A	5862	broad.mit.edu	37	chr8	61471568	61471568	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtccattctactagtgatGatgctaaaatcagtgaaact	8	7	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61471568	T	T	61471568	1	4	24	0	1	0	0	0	0	0	0	0	13025	1305	45	3		3	RAB2A	8	61471568	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1961050	61471568	84892454	1115	40109											
ASPH	444	broad.mit.edu	37	chr8	62580765	62580765	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacattaaacttgattcactCaaggctaatttgaaaaaatg	5	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62580765	G	G	62580765	1	3	24	0	1	0	0	0	0	0	0	0	1057	841	29	4		4	ASPH	8	62580765	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1109197	62580765	83783257	1116	40110											
LRRC67	286187	broad.mit.edu	37	chr8	67925301	67925301	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaatccttctaaaccttcTatgacagcaatgtaattgcc	4	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67925301	C	C	67925301	3	2	24	1	0	0	0	0	1	0	0	0	9106	1512	53	5	371	5	LRRC67	8	67925301	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	5344536	67925301	78438721	1117	40111											
NCOA2	10499	broad.mit.edu	37	chr8	71038945	71038945	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggttagccagattcatcTgggagccatgcaaagagctg	12	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71038945	A	A	71038945	1	1	24	0	1	0	0	0	0	0	0	0	10324	1595	55	5		5	NCOA2	8	71038945	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3113644	71038945	75325077	1118	40112											
KCNB2	9312	broad.mit.edu	37	chr8	73848476	73848476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgctgcagttccaaaacGtgaggcgcgtggtccagatc	14	11	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73848476	T	T	73848476	3	4	24	1	0	0	0	0	1	0	0	0	8083	1145	40	3	892	3	KCNB2	8	73848476	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2809531	73848476	72515546	1119	40113											
C8orf84	157869	broad.mit.edu	37	chr8	73993338	73993338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggtgggcagggcgcccCgccgttctgaggctcctgct	17	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73993338	A	A	73993338	3	1	24	1	0	0	0	0	1	0	0	0	2466	652	23	1	485	1	C8orf84	8	73993338	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	144862	73993338	72370684	1120	40114											
PI15	51050	broad.mit.edu	37	chr8	75757373	75757373	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatatgcagatatcgctctAttctccagttggtcaagcca	7	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75757373	T	T	75757373	3	4	24	1	0	0	0	0	1	0	0	0	11963	449	16	5	413	5	PI15	8	75757373	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1764035	75757373	70606649	1121	40115											
ZFHX4	79776	broad.mit.edu	37	chr8	77620045	77620045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctctgcaactacaacaCtcagctcaaagccaacttcc	4	16	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77620045	A	A	77620045	3	1	24	1	0	0	0	0	1	0	0	0	17761	565	20	3	2861	3	ZFHX4	8	77620045	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1862672	77620045	68743977	1122	40116											
PKIA	5569	broad.mit.edu	37	chr8	79513982	79513982	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttttcttttgcagaaggtGaagaagatgcacaacgaagt	11	5	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79513982	T	T	79513982	4	4	24	1	0	0	0	0	0	1	0	0	12068	1291	45	3	163	3	PKIA	8	79513982	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1893937	79513982	66850040	1123	40117											
PAG1	55824	broad.mit.edu	37	chr8	81897386	81897386	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttgggaggagctgtcCttgagcacttcatagggccc	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81897386	G	G	81897386	3	3	24	1	0	0	0	0	1	0	0	0	11482	680	24	4	809	4	PAG1	8	81897386	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2383404	81897386	64466636	1124	40118											
PSKH2	85481	broad.mit.edu	37	chr8	87076237	87076237	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttcagaatcttcctgtaaAgccttgtctggctttcatca	6	11	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87076237	T	T	87076237	3	4	24	1	0	0	0	0	1	0	0	0	12771	72	3	5	354	5	PSKH2	8	87076237	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	5178851	87076237	59287785	1125	40119											
CNGB3	54714	broad.mit.edu	37	chr8	87656939	87656939	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagaaaagcaaaagaaatcCaaaagcatgttagtcttaaa	6	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87656939	G	G	87656939	1	3	24	0	1	0	0	0	0	0	0	0	3633	609	21	4		4	CNGB3	8	87656939	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	580702	87656939	58707083	1126	40120											
CNBD1	168975	broad.mit.edu	37	chr8	87917399	87917399	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaacccagacttcctaaActtttcaaacaggaggaaca	5	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87917399	C	C	87917399	3	2	24	1	0	0	0	0	1	0	0	0	3623	40	2	5	259	5	CNBD1	8	87917399	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	260460	87917399	58446623	1127	40121											
MMP16	4325	broad.mit.edu	37	chr8	89180170	89180170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatagctttacgagtctcaGggtctcctacttttggagtt	10	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89180170	T	T	89180170	3	4	24	1	0	0	0	0	1	0	0	0	9748	1000	35	2	1570	2	MMP16	8	89180170	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1262771	89180170	57183852	1128	40122											
CALB1	793	broad.mit.edu	37	chr8	91081256	91081256	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagtttctatgaagccactGtggtcagtatcatattttct	7	8	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91081256	C	C	91081256	3	2	24	1	0	0	0	0	1	0	0	0	2599	1368	48	4	471	4	CALB1	8	91081256	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1901086	91081256	55282766	1129	40123											
TMEM55A	55529	broad.mit.edu	37	chr8	92032573	92032573	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgtgtttaaaaaggaaagGattccattaaaactaatgaa	7	3	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92032573	T	T	92032573	1	4	24	0	1	0	0	0	0	0	0	0	16304	1189	41	3		3	TMEM55A	8	92032573	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	951317	92032573	54331449	1130	40124											
SLC26A7	115111	broad.mit.edu	37	chr8	92365065	92365065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaataaaaataccttaGcccttttaaatttaagttaa	2	5	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92365065	T	T	92365065	1	4	24	0	1	0	0	0	0	0	0	0	14636	986	34	3		3	SLC26A7	8	92365065	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	332492	92365065	53998957	1131	40125											
SLC26A7	115111	broad.mit.edu	37	chr8	92406486	92406486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgataacttggatcttccaaCaatgccaccgctctgaggat	8	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92406486	A	A	92406486	1	1	24	0	1	0	0	0	0	0	0	0	14636	478	17	3		3	SLC26A7	8	92406486	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	41421	92406486	53957536	1132	40126											
C8orf37	157657	broad.mit.edu	37	chr8	96275920	96275921	+	Frame_Shift_Ins	INS	-	T	T													aacacttgacttacagagggINSttttttgtccaagttgggct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96275921	T	T	96275920	7	5	24	1	0	1	1	0	0	0	0	0	2449	1261	44	0	405	0	C8orf37	8	96275920	Frame_Shift_Ins	INS	-	TCGA-05-4427-01A-21D-1855-08	3869434	96275920	50088102	1133	40127											
GRHL2	79977	broad.mit.edu	37	chr8	102649250	102649250	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtaaccctaggcaggaagtGaaaccctcctctcacctcag	9	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102649250	A	A	102649250	1	1	24	0	1	0	0	0	0	0	0	0	6830	1305	45	4		4	GRHL2	8	102649250	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	6373330	102649250	43714772	1134	40128											
RIMS2	9699	broad.mit.edu	37	chr8	104943646	104943646	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatataaaacaaaataaatGttctggaaaataaatgagaa	7	2	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104943646	A	A	104943646	1	1	24	0	1	0	0	0	0	0	0	0	13479	1392	48	4		4	RIMS2	8	104943646	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2294396	104943646	41420376	1135	40129											
TM7SF4	81501	broad.mit.edu	37	chr8	105361064	105361064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggcctgcgtgaaggcaGgaatgctttgattgcagctg	15	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105361064	T	T	105361064	3	4	24	1	0	0	0	0	1	0	0	0	16099	1000	35	2	286	2	TM7SF4	8	105361064	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	417418	105361064	41002958	1136	40130											
DPYS	1807	broad.mit.edu	37	chr8	105405087	105405087	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaacttcccatctcctgcCgtgacactgaacactccggc	6	16	1	2	rs35670436		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105405087	G	G	105405087	2	3	24	1	0	0	0	0	0	0	0	1	4786	639	23	4		4	DPYS	8	105405087	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	44023	105405087	40958935	1137	40131											
LRP12	29967	broad.mit.edu	37	chr8	105502807	105502807	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaatcaccctgcattttttCtttttaaactaaaactagtt	3	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105502807	A	A	105502807	1	1	24	0	1	0	0	0	0	0	0	0	9041	928	32	3		3	LRP12	8	105502807	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	97720	105502807	40861215	1138	40132											
LRP12	29967	broad.mit.edu	37	chr8	105503499	105503499	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgctcctgccatatctcttCtctcattttctgtgtctgta	5	12	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105503499	A	A	105503499	3	1	24	1	0	0	0	0	1	0	0	0	9041	913	32	3	601	3	LRP12	8	105503499	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	692	105503499	40860523	1139	40133											
LRP12	29967	broad.mit.edu	37	chr8	105521317	105521317	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaagctggaagatagccaAagcaatctttccttattatt	6	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105521317	T	T	105521317	1	4	24	0	1	0	0	0	0	0	0	0	9041	29	1	5		5	LRP12	8	105521317	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	17818	105521317	40842705	1140	40134											
ZFPM2	23414	broad.mit.edu	37	chr8	106813843	106813843	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagatatcaccatggtcccTcaagcttcagagatcttagc	7	12	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106813843	C	C	106813843	2	2	24	1	0	0	0	0	0	0	0	1	17784	1538	54	5		5	ZFPM2	8	106813843	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	1292526	106813843	39550179	1141	40135											
ZFPM2	23414	broad.mit.edu	37	chr8	106814156	106814156	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagctgctcattctgctgatCctgagaatccacttcttcaa	6	13	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106814156	G	G	106814156	3	3	24	1	0	0	0	0	1	0	0	0	17784	855	30	4	1876	4	ZFPM2	8	106814156	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	313	106814156	39549866	1142	40136											
NUDCD1	84955	broad.mit.edu	37	chr8	110255543	110255543	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatagcctgccaagaataTgagacaaacaaaagaaaaac	7	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110255543	G	G	110255543	1	3	24	0	1	0	0	0	0	0	0	0	10817	1479	51	5		5	NUDCD1	8	110255543	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3441387	110255543	36108479	1143	40137											
KCNV1	27012	broad.mit.edu	37	chr8	110980547	110980547	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagcgatcgttaataatagCaataggcaaggccaagacaa	10	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110980547	G	G	110980547	3	3	24	1	0	0	0	0	1	0	0	0	8164	710	25	4	233	4	KCNV1	8	110980547	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	725004	110980547	35383475	1144	40138											
CSMD3	114788	broad.mit.edu	37	chr8	113259209	113259209	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaaaaatgcatataaattCttacccatgatagcattatt	4	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113259209	T	T	113259209	1	4	24	0	1	0	0	0	0	0	0	0	3980	928	32	4		4	CSMD3	8	113259209	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2278662	113259209	33104813	1145	40139											
CSMD3	114788	broad.mit.edu	37	chr8	113347734	113347734	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggattgggaaaggaggagaGatcaagattgattgtggaag	17	1	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113347734	T	T	113347734	1	4	24	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113347734	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	88525	113347734	33016288	1146	40140											
CSMD3	114788	broad.mit.edu	37	chr8	113364743	113364743	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctaggagtttgtggttcagGacaggaatccaaaccaattg	12	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113364743	A	A	113364743	3	1	24	1	0	0	0	0	1	0	0	0	3980	1174	41	4	5098	4	CSMD3	8	113364743	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	17009	113364743	32999279	1147	40141											
CSMD3	114788	broad.mit.edu	37	chr8	113402908	113402908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacttgaatgccagctccCtctggcactgtgatcttcca	7	14	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113402908	A	A	113402908	3	1	24	1	0	0	0	0	1	0	0	0	3980	680	24	2	5348	2	CSMD3	8	113402908	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	38165	113402908	32961114	1148	40142											
CSMD3	114788	broad.mit.edu	37	chr8	113504786	113504786	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgatacaggtgagtgttGaataaccttgaagaacataa	9	6	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113504786	A	A	113504786	3	1	24	1	0	0	0	0	1	0	0	0	3980	1294	45	4	6077	4	CSMD3	8	113504786	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	101878	113504786	32859236	1149	40143											
CSMD3	114788	broad.mit.edu	37	chr8	113648979	113648979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattataaagaacgaaggGtgtaaccatgcaactccatg	9	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113648979	T	T	113648979	1	4	24	0	1	0	0	0	0	0	0	0	3980	1276	44	3		3	CSMD3	8	113648979	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	144193	113648979	32715043	1150	40144											
CSMD3	114788	broad.mit.edu	37	chr8	113657316	113657316	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcagaagatagtccaattAttatttcatgaggcaaatta	6	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113657316	T	T	113657316	1	4	24	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113657316	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	8337	113657316	32706706	1151	40145											
CSMD3	114788	broad.mit.edu	37	chr8	113662513	113662513	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagccaatggagaaatcatGaccatagcgacggccatgta	11	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113662513	T	T	113662513	3	4	24	1	0	0	0	0	1	0	0	0	3980	1290	45	3	8265	3	CSMD3	8	113662513	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5197	113662513	32701509	1152	40146											
TRPS1	7227	broad.mit.edu	37	chr8	116631897	116631897	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagggtcatctgcctctgctCtttgcggagacttcaagggc	13	11	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116631897	A	A	116631897	3	1	24	1	0	0	0	0	1	0	0	0	16718	913	32	3	3476	3	TRPS1	8	116631897	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2969384	116631897	29732125	1153	40147											
COL14A1	7373	broad.mit.edu	37	chr8	121354612	121354612	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggagtatgctttttttctCatccagggtgacctgcagtc	10	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121354612	T	T	121354612	1	4	24	0	1	0	0	0	0	0	0	0	3703	841	29	4		4	COL14A1	8	121354612	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4722715	121354612	25009410	1154	40148											
MRPL13	28998	broad.mit.edu	37	chr8	121444404	121444404	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattttgtaagaaaaataaAaaccttaagaaaaagtggcc	7	4	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121444404	G	G	121444404	1	3	24	0	1	0	0	0	0	0	0	0	9872	29	1	5		5	MRPL13	8	121444404	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	89792	121444404	24919618	1155	40149											
HAS2	3037	broad.mit.edu	37	chr8	122629215	122629215	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaggcacattttaatgtgtCtcaagcaccaacaacaacac	5	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122629215	G	G	122629215	1	3	24	0	1	0	0	0	0	0	0	0	7028	928	32	4		4	HAS2	8	122629215	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1184811	122629215	23734807	1156	40150											
WDYHV1	55093	broad.mit.edu	37	chr8	124448786	124448786	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttccctgcctctttgacActtatgtagaagatgccttt	6	11	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124448786	T	T	124448786	3	4	24	1	0	0	0	0	1	0	0	0	17470	159	6	5	342	5	WDYHV1	8	124448786	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1819571	124448786	21915236	1157	40151											
NSMCE2	286053	broad.mit.edu	37	chr8	126379083	126379083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgaagcacttagaaggGcaattgagaaccataacaag	11	6	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126379083	T	T	126379083	3	4	24	1	0	0	0	0	1	0	0	0	10771	1203	42	3	722	3	NSMCE2	8	126379083	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1930297	126379083	19984939	1158	40152											
ASAP1	50807	broad.mit.edu	37	chr8	131193083	131193083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctctgtgcggatcatccCatgttgttttgcgtgctctc	9	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131193083	A	A	131193083	3	1	24	1	0	0	0	0	1	0	0	0	1014	594	21	2	2907	2	ASAP1	8	131193083	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	4814000	131193083	15170939	1159	40153											
OC90	729330	broad.mit.edu	37	chr8	133044419	133044419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgcaaaggaaccccatGtcttactcgttggctcacca	8	13	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133044419	T	T	133044419	1	4	24	0	1	0	0	0	0	0	0	0	10909	1392	48	3		3	OC90	8	133044419	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1851336	133044419	13319603	1160	40154											
OC90	729330	broad.mit.edu	37	chr8	133051386	133051386	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactctgcacacagcaagaGcatagccaattggaaagatc	10	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133051386	A	A	133051386	1	1	24	0	1	0	0	0	0	0	0	0	10909	986	34	4		4	OC90	8	133051386	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	6967	133051386	13312636	1161	40155											
TG	7038	broad.mit.edu	37	chr8	133984896	133984896	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggaattcagatgtgcagtGaggagaatggaggagcctgg	18	4	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133984896	A	A	133984896	3	1	24	1	0	0	0	0	1	0	0	0	15936	1291	45	4	6243	4	TG	8	133984896	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	933510	133984896	12379126	1162	40156											
KHDRBS3	10656	broad.mit.edu	37	chr8	136637767	136637767	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagctgcactgctagaacTgagaggtttcttgggtgtat	15	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136637767	G	G	136637767	1	3	24	0	1	0	0	0	0	0	0	0	8218	1595	55	5		5	KHDRBS3	8	136637767	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2652871	136637767	9726255	1163	40157											
COL22A1	169044	broad.mit.edu	37	chr8	139736816	139736816	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctccccccagagcaatgggGagagggaggaggggagcagg	20	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139736816	T	T	139736816	1	4	24	0	1	0	0	0	0	0	0	0	3713	1189	41	3		3	COL22A1	8	139736816	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3099049	139736816	6627206	1164	40158											
COL22A1	169044	broad.mit.edu	37	chr8	139749906	139749906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtctcggtggacatttgGgtctttattactctcaacct	9	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139749906	T	T	139749906	1	4	24	0	1	0	0	0	0	0	0	0	3713	1247	43	2		2	COL22A1	8	139749906	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	13090	139749906	6614116	1165	40159											
KCNK9	51305	broad.mit.edu	37	chr8	140630624	140630624	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcttggtgagatctcctcGatcttgtaagagatggagtg	14	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140630624	T	T	140630624	2	4	24	1	0	0	0	0	0	0	0	1	8142	1048	37	3		3	KCNK9	8	140630624	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	880718	140630624	5733398	1166	40160											
FLJ43860	389690	broad.mit.edu	37	chr8	142500188	142500188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctccatgacccaccccaCcctgtccgcaaactggcgcc	6	21	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142500188	A	A	142500188	1	1	24	0	1	0	0	0	0	0	0	0	5987	522	18	3		3	FLJ43860	8	142500188	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1869564	142500188	3863834	1167	40161											
BAI1	575	broad.mit.edu	37	chr8	143570376	143570376	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggatggcgggccggggttGacagtgcactttcttccaga	17	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143570376	C	C	143570376	1	2	24	0	1	0	0	0	0	0	0	0	1303	1305	45	4		4	BAI1	8	143570376	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1070188	143570376	2793646	1168	40162											
CYP11B1	1584	broad.mit.edu	37	chr8	143957222	143957222	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggctgcggcggccaggctctCctggcgcagggcctgctgca	17	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143957222	G	G	143957222	3	3	24	1	0	0	0	0	1	0	0	0	4178	864	30	4	500	4	CYP11B1	8	143957222	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	386846	143957222	2406800	1169	40163											
C8orf73	642475	broad.mit.edu	37	chr8	144652142	144652142	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgaagaaggccatagcCgtgagacgctgcgggtcgtc	15	11	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144652142	T	T	144652142	2	4	24	1	0	0	0	0	0	0	0	1	2461	639	23	4		4	C8orf73	8	144652142	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	694920	144652142	1711880	1170	40164											
CYHR1	50626	broad.mit.edu	37	chr8	145689627	145689627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcctgtcctcctccagCcggctcaggaggcctgccac	11	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145689627	A	A	145689627	1	1	24	0	1	0	0	0	0	0	0	0	4173	726	26	3		3	CYHR1	8	145689627	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1037485	145689627	674395	1171	40165											
RECQL4	9401	broad.mit.edu	37	chr8	145737889	145737889	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaactccacggagctgctgcCttgccctgggtcctcaggca	11	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145737889	G	G	145737889	3	3	24	1	0	0	0	0	1	0	0	0	13310	681	24	4	705	4	RECQL4	8	145737889	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	48262	145737889	626133	1172	40166											
ARHGAP39	80728	broad.mit.edu	37	chr8	145830920	145830920	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtcggtcggctccttacCgagtgttcgaccctggaatc	12	13	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145830920	T	T	145830920	3	4	24	1	0	0	0	0	1	0	0	0	886	666	23	4	3308	4	ARHGAP39	8	145830920	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	93031	145830920	533102	1173	40167											
DOCK8	81704	broad.mit.edu	37	chr9	464110	464110	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctaactgatcttttcttgCttctgtacgctctctttccc	6	13	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	464110	T	T	464110	1	4	24	0	1	0	0	0	0	0	0	0	4733	812	28	4		4	DOCK8	9	464110	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08		464110	140749321	1174	40168											
SMARCA2	6595	broad.mit.edu	37	chr9	2104286	2104286	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgaagaattgactagaagCattgggagcagtttttctag	11	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2104286	G	G	2104286	1	3	24	0	1	0	0	0	0	0	0	0	14883	725	25	4		4	SMARCA2	9	2104286	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1640176	2104286	139109145	1175	40169											
KIAA1432	57589	broad.mit.edu	37	chr9	5753629	5753629	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccaaaaaatggaaacttTttggaaacattacccaggtt	6	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5753629	G	G	5753629	3	3	24	1	0	0	0	0	1	0	0	0	8303	1841	64	5	1398	5	KIAA1432	9	5753629	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	3649343	5753629	135459802	1176	40170											
UHRF2	115426	broad.mit.edu	37	chr9	6413470	6413470	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggggagacaaaggggaccGgttcctctctaggcgccaag	16	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6413470	A	A	6413470	1	1	24	0	1	0	0	0	0	0	0	0	17096	1131	39	4		4	UHRF2	9	6413470	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	659841	6413470	134799961	1177	40171											
UHRF2	115426	broad.mit.edu	37	chr9	6477747	6477747	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgtgatgaatgtaatGtggcttatcatatttactgt	9	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6477747	A	A	6477747	3	1	24	1	0	0	0	0	1	0	0	0	17096	1377	48	4	1121	4	UHRF2	9	6477747	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	64277	6477747	134735684	1178	40172											
GLDC	2731	broad.mit.edu	37	chr9	6535940	6535940	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaactgcatcttctcagaaGaattaccttattctagggaa	6	9	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6535940	T	T	6535940	1	4	24	0	1	0	0	0	0	0	0	0	6497	957	33	3		3	GLDC	9	6535940	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	58193	6535940	134677491	1179	40173											
GLDC	2731	broad.mit.edu	37	chr9	6610298	6610298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatggtctggtagttgaGtaaactctccagcctcccct	8	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6610298	T	T	6610298	3	4	24	1	0	0	0	0	1	0	0	0	6497	1029	36	3	2621	3	GLDC	9	6610298	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	74358	6610298	134603133	1180	40174											
PTPRD	5789	broad.mit.edu	37	chr9	8340220	8340220	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaggaatgatggtccggaTtatgtccagagtgcactgca	12	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8340220	G	G	8340220	1	3	24	0	1	0	0	0	0	0	0	0	12907	1508	52	5		5	PTPRD	9	8340220	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1729922	8340220	132873211	1181	40175											
PTPRD	5789	broad.mit.edu	37	chr9	8341911	8341911	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccataaatatctacagtttTttcatgctttattctttcta	3	8	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8341911	C	C	8341911	3	2	24	1	0	0	0	0	1	0	0	0	12907	1850	64	5	1037	5	PTPRD	9	8341911	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1691	8341911	132871520	1182	40176											
PTPRD	5789	broad.mit.edu	37	chr9	8404421	8404421	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacaggcgtgagccaccatGcacagccatcttaattactt	7	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8404421	A	A	8404421	1	1	24	0	1	0	0	0	0	0	0	0	12907	1334	46	4		4	PTPRD	9	8404421	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	62510	8404421	132809010	1183	40177											
PTPRD	5789	broad.mit.edu	37	chr9	8449761	8449761	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcgcctcagttctacagGgtctgttgggtggtgtgaag	16	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8449761	A	A	8449761	3	1	24	1	0	0	0	0	1	0	0	0	12907	1232	43	4	1884	4	PTPRD	9	8449761	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	45340	8449761	132763670	1184	40178											
PTPRD	5789	broad.mit.edu	37	chr9	8465429	8465429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtgaaaatgtataagcGtaccataggaaacagatgcc	9	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8465429	T	T	8465429	1	4	24	0	1	0	0	0	0	0	0	0	12907	1160	40	3		3	PTPRD	9	8465429	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	15668	8465429	132748002	1185	40179											
PTPRD	5789	broad.mit.edu	37	chr9	8499800	8499800	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actttaacagatgttgagttGacagcctctacctcgacttt	7	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8499800	T	T	8499800	2	4	24	1	0	0	0	0	0	0	0	1	12907	1277	45	3		3	PTPRD	9	8499800	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	34371	8499800	132713631	1186	40180											
PTPRD	5789	broad.mit.edu	37	chr9	8525032	8525032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactctgctcaatctgaaggGctcctgtatggatataaaat	8	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8525032	T	T	8525032	3	4	24	1	0	0	0	0	1	0	0	0	12907	1203	42	3	5350	3	PTPRD	9	8525032	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	25232	8525032	132688399	1187	40181											
PTPRD	5789	broad.mit.edu	37	chr9	8633452	8633452	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagacccatcgtcaaactCtattacctattagaggaaac	5	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8633452	G	G	8633452	3	3	24	1	0	0	0	0	1	0	0	0	12907	922	32	4	5721	4	PTPRD	9	8633452	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	108420	8633452	132579979	1188	40182											
MPDZ	8777	broad.mit.edu	37	chr9	13112198	13112198	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgatatttttcattgaccTtttgtttattctttggcatg	7	5	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13112198	A	A	13112198	1	1	24	0	1	0	0	0	0	0	0	0	9816	1624	56	5		5	MPDZ	9	13112198	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	4478746	13112198	128101233	1189	40183											
PSIP1	11168	broad.mit.edu	37	chr9	15469012	15469012	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgttgcattgtgacctgAagtgaagcaagttcatccaa	10	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15469012	C	C	15469012	2	2	24	1	0	0	0	0	0	0	0	1	12769	233	9	5		5	PSIP1	9	15469012	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	2356814	15469012	125744419	1190	40184											
BNC2	54796	broad.mit.edu	37	chr9	16436690	16436690	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctcggttattccttagcAtaggcatgtgaaggcgagga	12	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16436690	G	G	16436690	3	3	24	1	0	0	0	0	1	0	0	0	1481	217	8	5	1805	5	BNC2	9	16436690	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	967678	16436690	124776741	1191	40185											
IFNA21	3452	broad.mit.edu	37	chr9	21166573	21166573	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatggatttgtagctgagCaccagcacggccatcagtaa	11	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21166573	A	A	21166573	2	1	24	1	0	0	0	0	0	0	0	1	7608	697	25	3		3	IFNA21	9	21166573	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	4729883	21166573	120046858	1192	40186											
IFNA14	3448	broad.mit.edu	37	chr9	21231732	21231732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagattctctgcatttggcCcagaagagccaaggtgttcc	12	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21231732	A	A	21231732	1	1	24	0	1	0	0	0	0	0	0	0	7604	638	22	2		2	IFNA14	9	21231732	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	65159	21231732	119981699	1193	40187											
IFNA5	3442	broad.mit.edu	37	chr9	21304697	21304697	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccagttttcattccttccTccttaatctttcttgcaagt	3	12	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21304697	C	C	21304697	3	2	24	1	0	0	0	0	1	0	0	0	7610	1550	54	5	14	5	IFNA5	9	21304697	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	72965	21304697	119908734	1194	40188											
IFNA5	3442	broad.mit.edu	37	chr9	21305309	21305309	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgagtgaccctgaaccttGggctcttctctgaagacctt	9	11	2	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21305309	T	T	21305309	1	4	24	0	1	0	0	0	0	0	0	0	7610	1363	47	2		2	IFNA5	9	21305309	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	612	21305309	119908122	1195	40189											
MTAP	4507	broad.mit.edu	37	chr9	21930000	21930000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatattatctttcttcaGgcaactttgctaattaagtc	4	8	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21930000	T	T	21930000	1	4	24	0	1	0	0	0	0	0	0	0	10005	1015	35	2		2	MTAP	9	21930000	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	624691	21930000	119283431	1196	40190											
DMRTA1	63951	broad.mit.edu	37	chr9	22447651	22447651	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgggggctgcgctgggacTgggtgccttgagacaggcca	20	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22447651	A	A	22447651	3	1	24	1	0	0	0	0	1	0	0	0	4628	1580	55	5	589	5	DMRTA1	9	22447651	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	517651	22447651	118765780	1197	40191											
DMRTA1	63951	broad.mit.edu	37	chr9	22451687	22451687	+	Missense_Mutation	SNP	G	C	C													tctctacggcgtaaatcctaGagtaggtatcagtccattaa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22451687	C	C	22451687	3	2	24	1	0	0	0	0	1	0	0	0	4628	942	33	4	1298	4	DMRTA1	9	22451687	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4036	22451687	118761744	1198	40192	215	2									
DMRTA1	63951	broad.mit.edu	37	chr9	22451693	22451693	+	Missense_Mutation	SNP	G	C	C													cggcgtaaatcctagagtagGtatcagtccattaaggctgg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22451693	C	C	22451693	3	2	24	1	0	0	0	0	1	0	0	0	4628	1261	44	4	1304	4	DMRTA1	9	22451693	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	6	22451693	118761738	1199	40193	215	2									
ELAVL2	1993	broad.mit.edu	37	chr9	23692662	23692662	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcctcatcatagtttgTcatagtcacaaatccaaaac	6	11	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23692662	A	A	23692662	3	1	24	1	0	0	0	0	1	0	0	0	5092	1667	58	5	110	5	ELAVL2	9	23692662	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1240969	23692662	117520769	1200	40194											
GALT	2592	broad.mit.edu	37	chr9	34648701	34648701	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttcccttgcctatttgctGaccacactccggctcctatg	7	16	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648701	A	A	34648701	1	1	24	0	1	0	0	0	0	0	0	0	6292	1305	45	4		4	GALT	9	34648701	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	10956039	34648701	106564730	1201	40195											
SIT1	27240	broad.mit.edu	37	chr9	35650510	35650510	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacccaccgtccctgcccCggatggctcctgctccggcc	9	21	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35650510	A	A	35650510	2	1	24	1	0	0	0	0	0	0	0	1	14457	639	23	1		1	SIT1	9	35650510	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1001809	35650510	105562921	1202	40196											
TLN1	7094	broad.mit.edu	37	chr9	35711689	35711689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtcctgaggggttcccCgagaggcctgcaccagttct	13	14	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35711689	A	A	35711689	3	1	24	1	0	0	0	0	1	0	0	0	16070	652	23	1	3959	1	TLN1	9	35711689	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	61179	35711689	105501742	1203	40197											
CLTA	1211	broad.mit.edu	37	chr9	36304087	36304087	+	RNA	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaagaaattaaagaggcCgggcgcagtggctcacgcct	12	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36304087	T	T	36304087	1	4	24	0	1	0	0	0	0	0	0	0	3596	667	23	4		4	CLTA	9	36304087	RNA	SNP	C	TCGA-05-4427-01A-21D-1855-08	592398	36304087	104909344	1204	40198											
FRMPD1	22844	broad.mit.edu	37	chr9	37745322	37745322	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagagaagatagcttctaTccctacaaaggaagagccac	10	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37745322	A	A	37745322	3	1	24	1	0	0	0	0	1	0	0	0	6117	1435	50	5	3351	5	FRMPD1	9	37745322	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1441235	37745322	103468109	1205	40199											
IGFBPL1	347252	broad.mit.edu	37	chr9	38414076	38414076	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacacgagatgcatgagttCttggacagaaatacctttct	8	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38414076	A	A	38414076	1	1	24	0	1	0	0	0	0	0	0	0	7655	928	32	3		3	IGFBPL1	9	38414076	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	668754	38414076	102799355	1206	40200											
FAM75A6	389730	broad.mit.edu	37	chr9	43627804	43627804	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatcttgctggactgatgAgttaaaggcgcacgaggttc	14	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43627804	C	C	43627804	3	2	24	1	0	0	0	0	1	0	0	0	5674	304	11	5	3152	5	FAM75A6	9	43627804	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	5213728	43627804	97585627	1207	40201											
SMC5	23137	broad.mit.edu	37	chr9	72962987	72962987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaataaataatatttctGgcaaataattttaattatat	3	2	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72962987	T	T	72962987	1	4	24	0	1	0	0	0	0	0	0	0	14900	1363	47	2		2	SMC5	9	72962987	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	29335183	72962987	68250444	1208	40202											
TRPM3	80036	broad.mit.edu	37	chr9	73164370	73164370	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaacaaacacaaaagatctCtgttttgtgaccgtgtgaat	7	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73164370	G	G	73164370	1	3	24	0	1	0	0	0	0	0	0	0	16712	928	32	4		4	TRPM3	9	73164370	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	201383	73164370	68049061	1209	40203											
FAM108B1	51104	broad.mit.edu	37	chr9	74490030	74490030	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggagatagcaaatatttTaataactgaatgtagactca	7	4	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74490030	C	C	74490030	1	2	24	0	1	0	0	0	0	0	0	0	5438	1769	61	5		5	FAM108B1	9	74490030	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1325660	74490030	66723401	1210	40204											
GDA	9615	broad.mit.edu	37	chr9	74810383	74810383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtgactcactaatatGtgtttcttttcttttctttc	5	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74810383	T	T	74810383	1	4	24	0	1	0	0	0	0	0	0	0	6369	1392	48	3		3	GDA	9	74810383	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	320353	74810383	66403048	1211	40205											
GDA	9615	broad.mit.edu	37	chr9	74810461	74810461	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaggaaaaactggccaaaGaatggtgcttcaagccgtgt	11	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74810461	T	T	74810461	4	4	24	1	0	0	0	0	0	1	0	0	6369	943	33	3	175	3	GDA	9	74810461	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	78	74810461	66402970	1212	40206											
ALDH1A1	216	broad.mit.edu	37	chr9	75516186	75516186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtatattcatggaaacCgtactctcccctagagagaa	7	11	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75516186	A	A	75516186	3	1	24	1	0	0	0	0	1	0	0	0	490	652	23	1	65	1	ALDH1A1	9	75516186	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	705725	75516186	65697245	1213	40207											
RORB	6096	broad.mit.edu	37	chr9	77277352	77277352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgactctccgtaagtcGtttgccctatttacattctg	7	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77277352	T	T	77277352	1	4	24	0	1	0	0	0	0	0	0	0	13640	1160	40	3		3	RORB	9	77277352	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1761166	77277352	63936079	1214	40208											
TRPM6	140803	broad.mit.edu	37	chr9	77347647	77347647	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatctgtcaaattttctcCaacacctcaaaagaagaaac	5	10	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77347647	T	T	77347647	3	4	24	1	0	0	0	0	1	0	0	0	16715	603	21	4	298	4	TRPM6	9	77347647	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	70295	77347647	63865784	1215	40209											
TRPM6	140803	broad.mit.edu	37	chr9	77436694	77436694	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagtctcccacactgacaGgatgacgttgggaccgcctt	11	13	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77436694	A	A	77436694	2	1	24	1	0	0	0	0	0	0	0	1	16715	991	35	4		4	TRPM6	9	77436694	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	89047	77436694	63776737	1216	40210											
PRUNE2	158471	broad.mit.edu	37	chr9	79320124	79320124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgatattctggcccattaCatcatattcaaaatcacccc	3	13	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79320124	A	A	79320124	3	1	24	1	0	0	0	0	1	0	0	0	12747	478	17	3	2248	3	PRUNE2	9	79320124	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1883430	79320124	61893307	1217	40211											
PRUNE2	158471	broad.mit.edu	37	chr9	79323268	79323268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgggtgtggaaaataccCtggattctcaagcctagtcg	11	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79323268	A	A	79323268	3	1	24	1	0	0	0	0	1	0	0	0	12747	681	24	2	5392	2	PRUNE2	9	79323268	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3144	79323268	61890163	1218	40212											
PRUNE2	158471	broad.mit.edu	37	chr9	79325448	79325448	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaggctcaaatttctttcaGagttatctctgggactgtct	8	9	6	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79325448	T	T	79325448	3	4	24	1	0	0	0	0	1	0	0	0	12747	942	33	3	7572	3	PRUNE2	9	79325448	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2180	79325448	61887983	1219	40213											
TLE4	7091	broad.mit.edu	37	chr9	82319742	82319742	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttccgaggtgctgagaaGcacagaaactccgcagacta	11	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82319742	T	T	82319742	3	4	24	1	0	0	0	0	1	0	0	0	16064	962	34	3	688	3	TLE4	9	82319742	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2994294	82319742	58893689	1220	40214											
FLJ44082	389762	broad.mit.edu	37	chr9	84564728	84564728	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacagatagccccaggaaGttggacatttaaggggaaga	14	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84564728	T	T	84564728	1	4	24	0	1	0	0	0	0	0	0	0	5988	1044	36	3		3	FLJ44082	9	84564728	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	2244986	84564728	56648703	1221	40215											
FLJ46321	389763	broad.mit.edu	37	chr9	84606380	84606380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgttatctctaggtgGctctggtgggtcatccacct	12	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84606380	T	T	84606380	3	4	24	1	0	0	0	0	1	0	0	0	5990	1203	42	3	1009	3	FLJ46321	9	84606380	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	41652	84606380	56607051	1222	40216											
DAPK1	1612	broad.mit.edu	37	chr9	90263694	90263694	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accggctccttttcttctgcAgtctggagagatggccctcc	10	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90263694	T	T	90263694	5	4	24	1	0	0	0	0	0	0	1	0	4268	202	7	5	1382	5	DAPK1	9	90263694	Splice_Site	SNP	A	TCGA-05-4427-01A-21D-1855-08	5657314	90263694	50949737	1223	40217											
SHC3	53358	broad.mit.edu	37	chr9	91653039	91653039	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctccagcagcccctctgCctccttcctgctcatctctc	4	20	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91653039	T	T	91653039	3	4	24	1	0	0	0	0	1	0	0	0	14385	739	26	4	267	4	SHC3	9	91653039	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1389345	91653039	49560392	1224	40218											
SEMA4D	10507	broad.mit.edu	37	chr9	92001394	92001394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctttgtgcagagctcccCggtctgcagggccaaagcta	13	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92001394	A	A	92001394	3	1	24	1	0	0	0	0	1	0	0	0	14147	652	23	1	1840	1	SEMA4D	9	92001394	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	348355	92001394	49212037	1225	40219											
SYK	6850	broad.mit.edu	37	chr9	93657852	93657852	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagtggaactgcggctGcgcaattactactatgacgt	12	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93657852	A	A	93657852	2	1	24	1	0	0	0	0	0	0	0	1	15557	1306	46	4		4	SYK	9	93657852	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1656458	93657852	47555579	1226	40220											
SPTLC1	10558	broad.mit.edu	37	chr9	94817862	94817862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccagcactttcaccttaCaagatttattcctaaaaaaa	2	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94817862	A	A	94817862	1	1	24	0	1	0	0	0	0	0	0	0	15241	493	17	3		3	SPTLC1	9	94817862	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1160010	94817862	46395569	1227	40221											
FGD3	89846	broad.mit.edu	37	chr9	95778063	95778063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccaagctgcggctcatGggccagaagttcagcgtccg	14	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95778063	T	T	95778063	3	4	24	1	0	0	0	0	1	0	0	0	5891	1348	47	2	1257	2	FGD3	9	95778063	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	960201	95778063	45435368	1228	40222											
WNK2	65268	broad.mit.edu	37	chr9	96000634	96000634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagggctgggttctgggGtccatctccagctgaactca	13	11	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96000634	T	T	96000634	1	4	24	0	1	0	0	0	0	0	0	0	17505	1276	44	3		3	WNK2	9	96000634	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	222571	96000634	45212797	1229	40223											
PHF2	5253	broad.mit.edu	37	chr9	96421775	96421775	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctggtgctgaccctgGgtccggttgtcctgcaggct	16	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96421775	C	C	96421775	1	2	24	0	1	0	0	0	0	0	0	0	11925	1247	43	4		4	PHF2	9	96421775	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	421141	96421775	44791656	1230	40224											
FBP2	8789	broad.mit.edu	37	chr9	97355924	97355924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagctgggtgagctcccCagtccctttggcctgacgcc	12	16	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97355924	A	A	97355924	3	1	24	1	0	0	0	0	1	0	0	0	5763	594	21	2	962	2	FBP2	9	97355924	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	934149	97355924	43857507	1231	40225											
C9orf102	375748	broad.mit.edu	37	chr9	98728714	98728714	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctgccagggaaattaaaAcaaaatttcctccctaagga	6	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98728714	T	T	98728714	1	4	24	0	1	0	0	0	0	0	0	0	2471	58	2	5		5	C9orf102	9	98728714	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1372790	98728714	42484717	1232	40226											
CORO2A	7464	broad.mit.edu	37	chr9	100892076	100892076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagtgtccctcacttacCgatccccttctgtgggttat	7	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100892076	A	A	100892076	3	1	24	1	0	0	0	0	1	0	0	0	3788	666	23	1	630	1	CORO2A	9	100892076	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2163362	100892076	40321355	1233	40227											
COL15A1	1306	broad.mit.edu	37	chr9	101784315	101784315	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacgatttctacagaaagGtggggagatggtaggaacag	15	5	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101784315	A	A	101784315	1	1	24	0	1	0	0	0	0	0	0	0	3704	1276	44	4		4	COL15A1	9	101784315	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	892239	101784315	39429116	1234	40228											
TEX10	54881	broad.mit.edu	37	chr9	103064539	103064539	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatacacgttgaagcagtaAtgtaagtctgtgagccactg	10	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103064539	C	C	103064539	3	2	24	1	0	0	0	0	1	0	0	0	15894	98	4	5	69	5	TEX10	9	103064539	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1280224	103064539	38148892	1235	40229											
CYLC2	1539	broad.mit.edu	37	chr9	105767254	105767254	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatatttatccccagaaaTtggtaagaaaggtgaagaca	9	5	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105767254	C	C	105767254	3	2	24	1	0	0	0	0	1	0	0	0	4175	1493	52	5	359	5	CYLC2	9	105767254	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	2702715	105767254	35446177	1236	40230											
OR13C5	138799	broad.mit.edu	37	chr9	107361235	107361235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgtactgcagaattgaCagctcctatgatccaggacc	9	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107361235	A	A	107361235	3	1	24	1	0	0	0	0	1	0	0	0	11031	478	17	3	498	3	OR13C5	9	107361235	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1593981	107361235	33852196	1237	40231											
ABCA1	19	broad.mit.edu	37	chr9	107568678	107568678	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggggaactggggcagtggtCcactcttcctcccctgcctg	13	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107568678	T	T	107568678	4	4	24	1	0	0	0	0	0	1	0	0	28	856	30	4	2557	4	ABCA1	9	107568678	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	207443	107568678	33644753	1238	40232											
SLC44A1	23446	broad.mit.edu	37	chr9	108151295	108151295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtctaagattatactctGtatgactttgttttctaggc	7	6	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108151295	T	T	108151295	1	4	24	0	1	0	0	0	0	0	0	0	14749	1392	48	3		3	SLC44A1	9	108151295	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	582617	108151295	33062136	1239	40233											
PTPN3	5774	broad.mit.edu	37	chr9	112151516	112151516	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatcaagctacttacccgCcctcgttctgtgagagtcgt	9	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112151516	A	A	112151516	2	1	24	1	0	0	0	0	0	0	0	1	12897	726	26	3		3	PTPN3	9	112151516	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	4000221	112151516	29061915	1240	40234											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112694417	112694417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacatagggggagctcacCttcagcccagcctcagatgc	10	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112694417	A	A	112694417	1	1	24	0	1	0	0	0	0	0	0	0	11504	696	24	2		2	PALM2-AKAP2	9	112694417	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	542901	112694417	28519014	1241	40235											
TXNDC8	255220	broad.mit.edu	37	chr9	113088319	113088319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaaagtacaacatacttGtatgtagagaattatattgg	8	3	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113088319	T	T	113088319	1	4	24	0	1	0	0	0	0	0	0	0	16927	1392	48	3		3	TXNDC8	9	113088319	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	393902	113088319	28125112	1242	40236											
OR2K2	26248	broad.mit.edu	37	chr9	114091950	114091951	+	5'Flank	DNP	AG	GT	GT													atccatgagcagtgaacttgAgcaaactaactttagcactt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	114091951	GT	GT	114091950	1	3	24	0	1	0	0	0	0	0	0	0	11099	319	11	5		5	OR2K2	9	114091950	5'Flank	DNP	AG	TCGA-05-4427-01A-21D-1855-08	1003631	114091950	27121481	1243	40237											
SUSD1	64420	broad.mit.edu	37	chr9	114864400	114864400	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatacttacttggagatcGcccaaatttttaaatgacac	7	8	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114864400	A	A	114864400	1	1	24	0	1	0	0	0	0	0	0	0	15525	1102	38	4		4	SUSD1	9	114864400	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	772450	114864400	26349031	1244	40238											
ALAD	210	broad.mit.edu	37	chr9	116154500	116154500	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagctgtgggaagggccagtGgtgcgggggcgactgagagg	22	6	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116154500	A	A	116154500	1	1	24	0	1	0	0	0	0	0	0	0	483	1363	47	4		4	ALAD	9	116154500	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1290100	116154500	25058931	1245	40239											
POLE3	54107	broad.mit.edu	37	chr9	116171083	116171083	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaggtgccacagtctccCgcccttttcagttgtctact	7	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116171083	A	A	116171083	1	1	24	0	1	0	0	0	0	0	0	0	12293	667	23	1		1	POLE3	9	116171083	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	16583	116171083	25042348	1246	40240											
TNC	3371	broad.mit.edu	37	chr9	117808850	117808850	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagactgctttttggtatctCtgattttgagaacaaaattg	8	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117808850	A	A	117808850	3	1	24	1	0	0	0	0	1	0	0	0	16393	913	32	3	1689	3	TNC	9	117808850	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1637767	117808850	23404581	1247	40241											
PAPPA	5069	broad.mit.edu	37	chr9	118950205	118950205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatctcctgggagctggaCgtgctggaggtgagcaactc	14	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118950205	A	A	118950205	3	1	24	1	0	0	0	0	1	0	0	0	11526	535	19	3	1194	3	PAPPA	9	118950205	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1141355	118950205	22263226	1248	40242											
PAPPA	5069	broad.mit.edu	37	chr9	118989776	118989776	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagtatgcttccaacgcTtcctccccaatgccctgcag	8	16	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118989776	A	A	118989776	2	1	24	1	0	0	0	0	0	0	0	1	11526	1596	56	5		5	PAPPA	9	118989776	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	39571	118989776	22223655	1249	40243											
PAPPA	5069	broad.mit.edu	37	chr9	118997687	118997687	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggtcctcagaatgtcttcTgtgatgtcccactgaccatc	9	12	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118997687	A	A	118997687	3	1	24	1	0	0	0	0	1	0	0	0	11526	1580	55	5	2529	5	PAPPA	9	118997687	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	7911	118997687	22215744	1250	40244											
PAPPA	5069	broad.mit.edu	37	chr9	119114996	119114996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttccaggcaacaacagcCtcctgacctgcatggaggat	10	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119114996	A	A	119114996	3	1	24	1	0	0	0	0	1	0	0	0	11526	681	24	2	4038	2	PAPPA	9	119114996	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	117309	119114996	22098435	1251	40245											
ASTN2	23245	broad.mit.edu	37	chr9	119202992	119202992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcgaggctgagacctcCatcagtgtgttgtaggccat	12	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119202992	A	A	119202992	3	1	24	1	0	0	0	0	1	0	0	0	1069	594	21	2	390	2	ASTN2	9	119202992	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	87996	119202992	22010439	1252	40246											
TLR4	7099	broad.mit.edu	37	chr9	120476556	120476557	+	Missense_Mutation	DNP	CC	AT	AT													agactttattcccggtgtggCcattgctgccaacatcatcc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	120476557	AT	AT	120476556	3	1	24	1	0	0	0	0	1	0	0	0	16076	739	26	3	2160	3	TLR4	9	120476556	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	1273564	120476556	20736875	1253	40247											
MEGF9	1955	broad.mit.edu	37	chr9	123367492	123367492	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttgtagttatgtatgggCgtcgtcagggtcagctgccc	14	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123367492	T	T	123367492	2	4	24	1	0	0	0	0	0	0	0	1	9557	755	27	4		4	MEGF9	9	123367492	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2890936	123367492	17845939	1254	40248											
DAB2IP	153090	broad.mit.edu	37	chr9	124526082	124526082	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcccagcaagtgctcggccGctgacctcccagagcaccag	10	17	0	2	rs141706892	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124526082	A	A	124526082	3	1	24	1	0	0	0	0	1	0	0	0	4252	1087	38	4	1330	4	DAB2IP	9	124526082	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1158590	124526082	16687349	1255	40249											
MRRF	92399	broad.mit.edu	37	chr9	125047614	125047614	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtggtctcttttggaatgGaggagactgggtcatatcag	14	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125047614	T	T	125047614	1	4	24	0	1	0	0	0	0	0	0	0	9944	1189	41	3		3	MRRF	9	125047614	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	521532	125047614	16165817	1256	40250											
OR1L4	254973	broad.mit.edu	37	chr9	125486596	125486596	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttcttcatggcatttgggAacactgacagctacctgctg	9	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125486596	G	G	125486596	3	3	24	1	0	0	0	0	1	0	0	0	11059	246	9	5	330	5	OR1L4	9	125486596	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	438982	125486596	15726835	1257	40251											
RC3H2	54542	broad.mit.edu	37	chr9	125642884	125642884	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaaaccttatcaatgaTagactgcatgtgtgatttat	6	7	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125642884	C	C	125642884	3	2	24	1	0	0	0	0	1	0	0	0	13275	1406	49	5	2768	5	RC3H2	9	125642884	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	156288	125642884	15570547	1258	40252											
ZBTB26	57684	broad.mit.edu	37	chr9	125682049	125682049	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattggtctcttaagaagggGgaacctgcagcaaacacaat	10	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125682049	A	A	125682049	2	1	24	1	0	0	0	0	0	0	0	1	17659	1219	43	4		4	ZBTB26	9	125682049	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	39165	125682049	15531382	1259	40253											
OLFML2A	169611	broad.mit.edu	37	chr9	127563737	127563737	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatcagcaagtatggcagTgtgcagaaaagctttgcaga	12	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127563737	G	G	127563737	3	3	24	1	0	0	0	0	1	0	0	0	10952	1693	59	5	732	5	OLFML2A	9	127563737	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1881688	127563737	13649694	1260	40254											
MAPKAP1	79109	broad.mit.edu	37	chr9	128305425	128305425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttgtccacctgaataaGggagaatccatgagcagcat	11	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128305425	T	T	128305425	3	4	24	1	0	0	0	0	1	0	0	0	9380	1000	35	2	739	2	MAPKAP1	9	128305425	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	741688	128305425	12908006	1261	40255											
ANGPTL2	23452	broad.mit.edu	37	chr9	129854077	129854077	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgctctcaggttccaggCggaaactggcgtattctgca	11	12	2	0	rs141690990		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129854077	T	T	129854077	3	4	24	1	0	0	0	0	1	0	0	0	614	768	27	4	335	4	ANGPTL2	9	129854077	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1548652	129854077	11359354	1262	40256											
ZNF79	7633	broad.mit.edu	37	chr9	130197409	130197409	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgacggtagcttttgcacAggaaaggtggaggtgcctcg	16	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130197409	C	C	130197409	3	2	24	1	0	0	0	0	1	0	0	0	18290	188	7	5	156	5	ZNF79	9	130197409	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	343332	130197409	11016022	1263	40257											
FAM129B	64855	broad.mit.edu	37	chr9	130279139	130279139	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggtggctgcctacctcGgatcttgctggcaaggtgct	16	11	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130279139	T	T	130279139	2	4	24	1	0	0	0	0	0	0	0	1	5483	1124	39	1		1	FAM129B	9	130279139	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	81730	130279139	10934292	1264	40258											
CERCAM	51148	broad.mit.edu	37	chr9	131185654	131185654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctataatcctagcactttGggaggccaaggcaggtggat	13	9	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131185654	T	T	131185654	1	4	24	0	1	0	0	0	0	0	0	0	3296	1363	47	2		2	CERCAM	9	131185654	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	906515	131185654	10027777	1265	40259											
SPTAN1	6709	broad.mit.edu	37	chr9	131375781	131375781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtaagcaaagggaggcGggccaggcccgagtgcctgg	19	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131375781	T	T	131375781	1	4	24	0	1	0	0	0	0	0	0	0	15235	1131	39	1		1	SPTAN1	9	131375781	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	190127	131375781	9837650	1266	40260											
FAM73B	84895	broad.mit.edu	37	chr9	131831427	131831427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgagtgactggcaggccCgggggagcacgagctgggct	20	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131831427	A	A	131831427	1	1	24	0	1	0	0	0	0	0	0	0	5669	667	23	1		1	FAM73B	9	131831427	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	455646	131831427	9382004	1267	40261											
ASB6	140459	broad.mit.edu	37	chr9	132397454	132397454	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgacatccgcttgcatgGtgccctggtaaccttgcctc	10	15	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132397454	T	T	132397454	1	4	24	0	1	0	0	0	0	0	0	0	1031	1276	44	3		3	ASB6	9	132397454	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	566027	132397454	8815977	1268	40262											
GPR107	57720	broad.mit.edu	37	chr9	132861768	132861768	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatccactggctgatggCggcccttcctttcaccaagt	8	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132861768	T	T	132861768	3	4	24	1	0	0	0	0	1	0	0	0	6688	768	27	4	934	4	GPR107	9	132861768	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	464314	132861768	8351663	1269	40263											
LAMC3	10319	broad.mit.edu	37	chr9	133942247	133942247	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcccaagcccgtgctgctCcggggaaggtggagggacgc	17	13	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133942247	A	A	133942247	1	1	24	0	1	0	0	0	0	0	0	0	8688	870	30	3		3	LAMC3	9	133942247	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1080479	133942247	7271184	1270	40264											
POMT1	10585	broad.mit.edu	37	chr9	134385640	134385640	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgacttttctttgaatctCtggcaggtctgtgtgttctg	10	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134385640	T	T	134385640	1	4	24	0	1	0	0	0	0	0	0	0	12340	928	32	4		4	POMT1	9	134385640	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	443393	134385640	6827791	1271	40265											
POMT1	10585	broad.mit.edu	37	chr9	134394065	134394065	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcttacactgagggagggCggcttttgtaacttctcagg	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134394065	T	T	134394065	1	4	24	0	1	0	0	0	0	0	0	0	12340	783	27	4		4	POMT1	9	134394065	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	8425	134394065	6819366	1272	40266											
POMT1	10585	broad.mit.edu	37	chr9	134397674	134397674	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctgggaagcccatgcGcagcaaacacatggggtgca	13	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134397674	A	A	134397674	1	1	24	0	1	0	0	0	0	0	0	0	12340	1102	38	4		4	POMT1	9	134397674	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3609	134397674	6815757	1273	40267											
NTNG2	84628	broad.mit.edu	37	chr9	135073437	135073437	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctcatgttcgacaaggagGaggagggcctggccacctac	15	11	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135073437	T	T	135073437	4	4	24	1	0	0	0	0	0	1	0	0	10800	1175	41	3	304	3	NTNG2	9	135073437	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	675763	135073437	6139994	1274	40268											
TTF1	7270	broad.mit.edu	37	chr9	135266240	135266240	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtagatataaaaagatggtCttatagtagctagtctattt	8	3	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135266240	A	A	135266240	1	1	24	0	1	0	0	0	0	0	0	0	16844	928	32	3		3	TTF1	9	135266240	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	192803	135266240	5947191	1275	40269											
CEL	1056	broad.mit.edu	37	chr9	135942025	135942025	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctcttcggggagtctgctgGaggtgccagcgtctctctgc	15	12	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135942025	C	C	135942025	3	2	24	1	0	0	0	0	1	0	0	0	3239	1174	41	4	674	4	CEL	9	135942025	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	675785	135942025	5271406	1276	40270											
COL5A1	1289	broad.mit.edu	37	chr9	137622368	137622368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctggggcagtgggccaaGggccagggctggggccacaa	20	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137622368	T	T	137622368	1	4	24	0	1	0	0	0	0	0	0	0	3728	1015	35	2		2	COL5A1	9	137622368	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1680343	137622368	3591063	1277	40271											
FCN1	2219	broad.mit.edu	37	chr9	137808186	137808186	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggcctccccacccggcccGcacctacctctctctccaat	5	23	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137808186	C	C	137808186	1	2	24	0	1	0	0	0	0	0	0	0	5848	1102	38	4		4	FCN1	9	137808186	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	185818	137808186	3405245	1278	40272											
KIAA0649	9858	broad.mit.edu	37	chr9	138378181	138378181	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggccatccacgcccaagAaaatgcaggaggtggtgaaa	13	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138378181	G	G	138378181	3	3	24	1	0	0	0	0	1	0	0	0	8257	247	9	5	1827	5	KIAA0649	9	138378181	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	569995	138378181	2835250	1279	40273											
KCNT1	57582	broad.mit.edu	37	chr9	138657096	138657096	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccggcccctagagacgCcatcctctccccaggactgc	8	21	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138657096	A	A	138657096	1	1	24	0	1	0	0	0	0	0	0	0	8161	754	26	3		3	KCNT1	9	138657096	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	278915	138657096	2556335	1280	40274											
SDCCAG3	10807	broad.mit.edu	37	chr9	139299458	139299458	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccgctcccaagggcaggcTgcaccggctgctgaggacaa	13	16	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139299458	A	A	139299458	1	1	24	0	1	0	0	0	0	0	0	0	14071	1595	55	5		5	SDCCAG3	9	139299458	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	642362	139299458	1913973	1281	40275											
NOTCH1	4851	broad.mit.edu	37	chr9	139411824	139411824	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgttgacctcgcagtgCacaccctcgtagcctgtggg	12	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139411824	T	T	139411824	2	4	24	1	0	0	0	0	0	0	0	1	10642	697	25	4		4	NOTCH1	9	139411824	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	112366	139411824	1801607	1282	40276											
TMEM141	85014	broad.mit.edu	37	chr9	139686191	139686191	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagtatgccgcatgccagtCacacgccttcatgaagggcg	13	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139686191	T	T	139686191	3	4	24	1	0	0	0	0	1	0	0	0	16179	838	29	4	89	4	TMEM141	9	139686191	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	274367	139686191	1527240	1283	40277											
PHPT1	29085	broad.mit.edu	37	chr9	139745268	139745268	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagccaagtaccccgactAcgaggtcacctgggctaacg	10	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139745268	T	T	139745268	3	4	24	1	0	0	0	0	1	0	0	0	11955	391	14	5	416	5	PHPT1	9	139745268	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	59077	139745268	1468163	1284	40278											
GRIN1	2902	broad.mit.edu	37	chr9	140059565	140059565	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccaggctgggcagcggcCcatgcaggagcaggcgaggg	20	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140059565	T	T	140059565	1	4	24	0	1	0	0	0	0	0	0	0	6844	638	22	4		4	GRIN1	9	140059565	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	314297	140059565	1153866	1285	40279											
GRIN1	2902	broad.mit.edu	37	chr9	140059821	140059821	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtgtctcccgccccatcAccccgccccggaccctgggc	10	22	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140059821	T	T	140059821	1	4	24	0	1	0	0	0	0	0	0	0	6844	174	6	5		5	GRIN1	9	140059821	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	256	140059821	1153610	1286	40280											
CACNA1B	774	broad.mit.edu	37	chr9	140807751	140807751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgaagacaggcccaagcCggcttggagtaacaacctcc	11	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140807751	A	A	140807751	1	1	24	0	1	0	0	0	0	0	0	0	2565	667	23	1		1	CACNA1B	9	140807751	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	747930	140807751	405680	1287	40281											
CACNA1B	774	broad.mit.edu	37	chr9	141009868	141009868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaagtaagcggccccttGctaaggggaaagagccctta	14	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141009868	T	T	141009868	1	4	24	0	1	0	0	0	0	0	0	0	2565	1334	46	3		3	CACNA1B	9	141009868	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	202117	141009868	203563	1288	40282											
ITIH2	3698	broad.mit.edu	37	chr10	7750928	7750928	+	Intron	SNP	G	T	T													acatcaaatgcactacatttGatgaagttctgtgtgatttt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7750928	T	T	7750928	1	4	24	0	1	0	0	0	0	0	0	0	7974	1305	45	3		3	ITIH2	10	7750928	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08		7750928	127783819	1289	40283	216	2									
ITIH2	3698	broad.mit.edu	37	chr10	7750937	7750938	+	Intron	INS	-	T	T													cactacatttgatgaagttcINStgtgtgatttttctatcagt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7750938	T	T	7750937	6	5	24	0	1	1	1	0	0	0	0	0	7974	928	32	0		0	ITIH2	10	7750937	Intron	INS	-	TCGA-05-4427-01A-21D-1855-08	9	7750937	127783810	1290	40284	216	2									
ATP5C1	509	broad.mit.edu	37	chr10	7838159	7838159	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatatgtgaattgagaaaaaCtaaattttgacaaatacaaa	5	3	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7838159	G	G	7838159	1	3	24	0	1	0	0	0	0	0	0	0	1153	580	20	4		4	ATP5C1	10	7838159	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	87222	7838159	127696588	1291	40285											
CELF2	10659	broad.mit.edu	37	chr10	11299746	11299746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatggtatcgaagaaatGtaatgagaacgacatcaggg	13	4	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11299746	T	T	11299746	3	4	24	1	0	0	0	0	1	0	0	0	3246	1377	48	3	524	3	CELF2	10	11299746	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3461587	11299746	124235001	1292	40286											
SEC61A2	55176	broad.mit.edu	37	chr10	12206455	12206455	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgctttgtttttctaaaTgttcaaatatttcattttgt	7	4	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12206455	C	C	12206455	1	2	24	0	1	0	0	0	0	0	0	0	14114	1479	51	5		5	SEC61A2	10	12206455	3'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	906709	12206455	123328292	1293	40287											
NUDT5	11164	broad.mit.edu	37	chr10	12228244	12228244	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacctcctctgaaatgataTactgtttgccattctgagaa	6	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12228244	C	C	12228244	3	2	24	1	0	0	0	0	1	0	0	0	10837	1406	49	5	648	5	NUDT5	10	12228244	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	21789	12228244	123306503	1294	40288											
CCDC3	83643	broad.mit.edu	37	chr10	13100196	13100196	+	Intron	DEL	C	-	-													ccacagctcccttcagggtgCcaaaaacttgattgccagcg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13100196	-	-	13100196	6	5	24	0	1	1	0	1	0	0	0	0	2831	754	26	0		0	CCDC3	10	13100196	Intron	DEL	C	TCGA-05-4427-01A-21D-1855-08	871952	13100196	122434551	1295	40289											
SEPHS1	22929	broad.mit.edu	37	chr10	13380847	13380847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcatccaaaaataaaacGggaaagccatttcattttat	5	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13380847	T	T	13380847	1	4	24	0	1	0	0	0	0	0	0	0	14167	1131	39	1		1	SEPHS1	10	13380847	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	280651	13380847	122153900	1296	40290											
ITGA8	8516	broad.mit.edu	37	chr10	15655809	15655809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttaaataaaacacaagGgtgataggcaggcagaagcc	11	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15655809	T	T	15655809	1	4	24	0	1	0	0	0	0	0	0	0	7952	1247	43	2		2	ITGA8	10	15655809	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2274962	15655809	119878938	1297	40291											
CUBN	8029	broad.mit.edu	37	chr10	16996591	16996591	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagtggttcagattcacatCtagaaggcctgtattccacg	9	10	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16996591	A	A	16996591	1	1	24	0	1	0	0	0	0	0	0	0	4084	928	32	3		3	CUBN	10	16996591	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1340782	16996591	118538156	1298	40292											
CUBN	8029	broad.mit.edu	37	chr10	17089615	17089615	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaacatgctgtgaacagaaAcagaccataagagagaaaat	8	7	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17089615	T	T	17089615	1	4	24	0	1	0	0	0	0	0	0	0	4084	58	2	5		5	CUBN	10	17089615	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	93024	17089615	118445132	1299	40293											
SLC39A12	221074	broad.mit.edu	37	chr10	18280026	18280026	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatttaatagttaagtcatCaagacttatctccatctttc	3	9	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18280026	A	A	18280026	1	1	24	0	1	0	0	0	0	0	0	0	14729	841	29	3		3	SLC39A12	10	18280026	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1190411	18280026	117254721	1300	40294											
CACNB2	783	broad.mit.edu	37	chr10	18551016	18551017	+	Intron	DNP	GG	TT	TT													gggaacaggaggtttatgcaGgctgggcaaactgcagtgct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	18551017	TT	TT	18551016	1	4	24	0	1	0	0	0	0	0	0	0	2579	1015	35	2		2	CACNB2	10	18551016	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	270990	18551016	116983731	1301	40295											
NEBL	10529	broad.mit.edu	37	chr10	21074853	21074853	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacatggctcggtaggtcctCtgagaaaggaagaagggatt	14	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21074853	T	T	21074853	1	4	24	0	1	0	0	0	0	0	0	0	10398	927	32	4		4	NEBL	10	21074853	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2523837	21074853	114459894	1302	40296											
C10orf140	387640	broad.mit.edu	37	chr10	21804537	21804537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttctttttcagggcatgCaaaaccttccttggctgtgg	10	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21804537	A	A	21804537	3	1	24	1	0	0	0	0	1	0	0	0	1606	710	25	3	515	3	C10orf140	10	21804537	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	729684	21804537	113730210	1303	40297											
DNAJC1	64215	broad.mit.edu	37	chr10	22217307	22217307	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacacacatttttaaaacacTgcatttctcggaaggaacaa	5	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22217307	A	A	22217307	1	1	24	0	1	0	0	0	0	0	0	0	4668	1595	55	5		5	DNAJC1	10	22217307	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	412770	22217307	113317440	1304	40298											
ARMC3	219681	broad.mit.edu	37	chr10	23295898	23295898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtactcttaatcaacaGtaaatcttacgtgtgagtct	8	8	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23295898	T	T	23295898	3	4	24	1	0	0	0	0	1	0	0	0	956	1029	36	3	1867	3	ARMC3	10	23295898	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1078591	23295898	112238849	1305	40299											
KIAA1217	56243	broad.mit.edu	37	chr10	24833392	24833392	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagagccccctacgtcgatAccttcagcttcacgtaaggt	8	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24833392	C	C	24833392	2	2	24	1	0	0	0	0	0	0	0	1	8286	381	14	5		5	KIAA1217	10	24833392	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	1537494	24833392	110701355	1306	40300											
GPR158	57512	broad.mit.edu	37	chr10	25701167	25701167	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgacactgtggttttattTggaactttcaggaaggggtc	12	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25701167	C	C	25701167	1	2	24	0	1	0	0	0	0	0	0	0	6728	1827	63	5		5	GPR158	10	25701167	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	867775	25701167	109833580	1307	40301											
GPR158	57512	broad.mit.edu	37	chr10	25886710	25886710	+	Frame_Shift_Del	DEL	A	-	-													tgttctggcaggacgagctgAaaaaactctatgcccaactg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25886710	-	-	25886710	7	5	24	1	0	1	0	1	0	0	0	0	6728	247	9	0	2197	0	GPR158	10	25886710	Frame_Shift_Del	DEL	A	TCGA-05-4427-01A-21D-1855-08	185543	25886710	109648037	1308	40302											
MYO3A	53904	broad.mit.edu	37	chr10	26414545	26414545	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcatcaccaaggtaaaaaTttttacagaaacattttttt	3	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26414545	G	G	26414545	1	3	24	0	1	0	0	0	0	0	0	0	10170	1508	52	5		5	MYO3A	10	26414545	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	527835	26414545	109120202	1309	40303											
GAD2	2572	broad.mit.edu	37	chr10	26582030	26582030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcctacctgggtacatgGgcccattcccgtctgtggac	11	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26582030	T	T	26582030	1	4	24	0	1	0	0	0	0	0	0	0	6240	1247	43	2		2	GAD2	10	26582030	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	167485	26582030	108952717	1310	40304											
ARMC4	55130	broad.mit.edu	37	chr10	28284091	28284091	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggatccaccgtgctcagaCctgagcttagcacacgcact	10	14	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28284091	A	A	28284091	1	1	24	0	1	0	0	0	0	0	0	0	957	522	18	3		3	ARMC4	10	28284091	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1702061	28284091	107250656	1311	40305											
SVIL	6840	broad.mit.edu	37	chr10	29821015	29821015	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactttcaccaggagaaaaaTagcgtcttggtttccgggac	10	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29821015	C	C	29821015	3	2	24	1	0	0	0	0	1	0	0	0	15539	1406	49	5	4839	5	SVIL	10	29821015	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1536924	29821015	105713732	1312	40306											
KIAA1462	57608	broad.mit.edu	37	chr10	30315188	30315188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaggcctcccgggagccCggcctggccccttgtggtgg	15	16	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30315188	A	A	30315188	3	1	24	1	0	0	0	0	1	0	0	0	8304	652	23	1	198	1	KIAA1462	10	30315188	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	494173	30315188	105219559	1313	40307											
ZEB1	6935	broad.mit.edu	37	chr10	31810711	31810711	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttacccacaatcgtggcCattgctgaccagaacagtgt	9	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31810711	T	T	31810711	2	4	24	1	0	0	0	0	0	0	0	1	17749	581	21	4		4	ZEB1	10	31810711	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1495523	31810711	103724036	1314	40308											
EPC1	80314	broad.mit.edu	37	chr10	32594623	32594623	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaataacaaaaacgctccTgaagagataaaaatctgtca	5	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32594623	A	A	32594623	1	1	24	0	1	0	0	0	0	0	0	0	5202	1595	55	5		5	EPC1	10	32594623	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	783912	32594623	102940124	1315	40309											
ZNF33B	7582	broad.mit.edu	37	chr10	43089497	43089497	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccactttcaccacaatcatAgtgtttcacaggtaccccat	4	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43089497	G	G	43089497	3	3	24	1	0	0	0	0	1	0	0	0	17981	420	15	5	1439	5	ZNF33B	10	43089497	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	10494874	43089497	92445250	1316	40310											
RET	5979	broad.mit.edu	37	chr10	43600684	43600684	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctacccagtgtctgtctcCggccacagttcgtttctcgg	10	14	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43600684	T	T	43600684	1	4	24	0	1	0	0	0	0	0	0	0	13343	667	23	4		4	RET	10	43600684	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	511187	43600684	91934063	1317	40311											
ZNF485	220992	broad.mit.edu	37	chr10	44101005	44101005	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggggggcctggtggtgGgggaggagtagctgatccag	23	5	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44101005	T	T	44101005	1	4	24	0	1	0	0	0	0	0	0	0	18065	1247	43	2		2	ZNF485	10	44101005	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	500321	44101005	91433742	1318	40312											
ALOX5	240	broad.mit.edu	37	chr10	45919680	45919680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgccgggaaattgacaagGgccttcctgcctgctgcagc	12	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45919680	T	T	45919680	1	4	24	0	1	0	0	0	0	0	0	0	540	1247	43	2		2	ALOX5	10	45919680	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1818675	45919680	89615067	1319	40313											
ALOX5	240	broad.mit.edu	37	chr10	45940969	45940969	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagctgttcctgggcaTgtacccagaagagcatttta	9	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45940969	A	A	45940969	3	1	24	1	0	0	0	0	1	0	0	0	540	1464	51	5	1913	5	ALOX5	10	45940969	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	21289	45940969	89593778	1320	40314											
FAM21C	253725	broad.mit.edu	37	chr10	46280912	46280912	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgatttttccttaaaacTtctaagatatttgatgcctt	4	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46280912	G	G	46280912	1	3	24	0	1	0	0	0	0	0	0	0	5589	1624	56	5		5	FAM21C	10	46280912	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	339943	46280912	89253835	1321	40315											
ZNF488	118738	broad.mit.edu	37	chr10	48370425	48370425	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcttcctctctctgcagGgccctgtggccgagtgtgtc	13	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48370425	A	A	48370425	1	1	24	0	1	0	0	0	0	0	0	0	18067	1246	43	4		4	ZNF488	10	48370425	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	2089513	48370425	87164322	1322	40316											
ARHGAP22	58504	broad.mit.edu	37	chr10	49654495	49654495	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctagggtcgaaaaaaacTcctccatttccctctgcaac	5	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49654495	C	C	49654495	3	2	24	1	0	0	0	0	1	0	0	0	874	1551	54	5	64	5	ARHGAP22	10	49654495	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1284070	49654495	85880252	1323	40317											
PGBD3	267004	broad.mit.edu	37	chr10	50723611	50723611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gataatggcataccacacgtCgacgaaactccagaaaatcc	7	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50723611	A	A	50723611	3	1	24	1	0	0	0	0	1	0	0	0	11877	884	31	3	235	3	PGBD3	10	50723611	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1069116	50723611	84811136	1324	40318											
CHAT	1103	broad.mit.edu	37	chr10	50854544	50854544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagggctgtgcctgcctccCctgcagactccaccaaccgg	10	18	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50854544	A	A	50854544	1	1	24	0	1	0	0	0	0	0	0	0	3344	638	22	2		2	CHAT	10	50854544	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	130933	50854544	84680203	1325	40319											
AGAP6	414189	broad.mit.edu	37	chr10	51769059	51769059	+	Frame_Shift_Del	DEL	C	-	-													ccagccccaagctcaacccgCccccctctcctcatgctaat							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51769059	-	-	51769059	7	5	24	1	0	1	0	1	0	0	0	0	372	739	26	0	1204	0	AGAP6	10	51769059	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	914515	51769059	83765688	1326	40320											
PCDH15	65217	broad.mit.edu	37	chr10	55943077	55943077	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatttaaagctatttaaaCtaattatgctatacaataag	4	4	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55943077	G	G	55943077	1	3	24	0	1	0	0	0	0	0	0	0	11605	580	20	4		4	PCDH15	10	55943077	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4174018	55943077	79591670	1327	40321											
PCDH15	65217	broad.mit.edu	37	chr10	56106296	56106296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcattttatcaactgcacaCcagaaatgttacagcataaa	4	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56106296	T	T	56106296	1	4	24	0	1	0	0	0	0	0	0	0	11605	522	18	4		4	PCDH15	10	56106296	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	163219	56106296	79428451	1328	40322											
ZWINT	11130	broad.mit.edu	37	chr10	58118794	58118794	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctccagcctacacccagctCagggctcaggctcaatgatg	9	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58118794	A	A	58118794	1	1	24	0	1	0	0	0	0	0	0	0	18378	841	29	3		3	ZWINT	10	58118794	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2012498	58118794	77415953	1329	40323											
ZWINT	11130	broad.mit.edu	37	chr10	58119778	58119778	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatcccctgcctactcaCggctcgtgtcttcagaagcc	7	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58119778	A	A	58119778	5	1	24	1	0	0	0	0	0	0	1	0	18378	550	19	3	600	3	ZWINT	10	58119778	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	984	58119778	77414969	1330	40324											
CTNNA3	29119	broad.mit.edu	37	chr10	69281494	69281494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacctgtatctgctctaaCcattagaagataagtttcct	5	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69281494	A	A	69281494	1	1	24	0	1	0	0	0	0	0	0	0	4048	522	18	3		3	CTNNA3	10	69281494	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	11161716	69281494	66253253	1331	40325											
MYPN	84665	broad.mit.edu	37	chr10	69934412	69934412	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctagaagtgcaccatccAtgtaagtgtcattgaggttt	10	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69934412	T	T	69934412	3	4	24	1	0	0	0	0	1	0	0	0	10192	231	8	5	2601	5	MYPN	10	69934412	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	652918	69934412	65600335	1332	40326											
RUFY2	55680	broad.mit.edu	37	chr10	70161320	70161320	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctagagtgtgaggtactttgGaggaacaatgaatacacttc	11	6	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70161320	C	C	70161320	1	2	24	0	1	0	0	0	0	0	0	0	13850	1189	41	4		4	RUFY2	10	70161320	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	226908	70161320	65373427	1333	40327											
ADAMTS14	140766	broad.mit.edu	37	chr10	72511079	72511079	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctggtctgaatccaaccCcctaccataccccagccatg	6	18	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72511079	T	T	72511079	1	4	24	0	1	0	0	0	0	0	0	0	259	638	22	4		4	ADAMTS14	10	72511079	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2349759	72511079	63023668	1334	40328											
UNC5B	219699	broad.mit.edu	37	chr10	73057592	73057592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggctcaatgagctcacaGtccaaggggagggaggctgg	16	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73057592	T	T	73057592	1	4	24	0	1	0	0	0	0	0	0	0	17118	1044	36	3		3	UNC5B	10	73057592	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	546513	73057592	62477155	1335	40329											
CDH23	64072	broad.mit.edu	37	chr10	73544644	73544644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccttctctgactggcCcagatgctggtggggatccg	12	14	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73544644	A	A	73544644	1	1	24	0	1	0	0	0	0	0	0	0	3138	638	22	2		2	CDH23	10	73544644	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	487052	73544644	61990103	1336	40330											
CDH23	64072	broad.mit.edu	37	chr10	73558956	73558956	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagacaacgggtccccgccCcgggcagctgagatccctgt	12	16	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73558956	A	A	73558956	2	1	24	1	0	0	0	0	0	0	0	1	3138	610	22	2		2	CDH23	10	73558956	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	14312	73558956	61975791	1337	40331											
NDST2	8509	broad.mit.edu	37	chr10	75564658	75564659	+	Intron	INS	-	T	T													gccaataatcagataaggccINStattttttttttttttttga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75564659	T	T	75564658	6	5	24	0	1	1	1	0	0	0	0	0	10351	696	24	0		0	NDST2	10	75564658	Intron	INS	-	TCGA-05-4427-01A-21D-1855-08	2005702	75564658	59970089	1338	40332											
DUSP13	51207	broad.mit.edu	37	chr10	76861637	76861637	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcacccacctgtgggagtatCtggcccaggctgtgcacttc	11	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76861637	T	T	76861637	1	4	24	0	1	0	0	0	0	0	0	0	4853	913	32	4		4	DUSP13	10	76861637	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1296979	76861637	58673110	1339	40333											
KCNMA1	3778	broad.mit.edu	37	chr10	78850049	78850049	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcttacccaactctggcCccatccccagtgccattccc	6	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78850049	T	T	78850049	1	4	24	0	1	0	0	0	0	0	0	0	8143	638	22	4		4	KCNMA1	10	78850049	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1988412	78850049	56684698	1340	40334											
ZMIZ1	57178	broad.mit.edu	37	chr10	81065336	81065336	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggatcagtacatgtggGgaatcctgaatgccatccaa	12	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81065336	T	T	81065336	4	4	24	1	0	0	0	0	0	1	0	0	17822	1233	43	2	2467	2	ZMIZ1	10	81065336	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2215287	81065336	54469411	1341	40335											
DYDC2	84332	broad.mit.edu	37	chr10	82126743	82126743	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcttctgatttacttctctCaaagctagaagccaagaaaa	6	9	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82126743	A	A	82126743	1	1	24	0	1	0	0	0	0	0	0	0	4879	841	29	3		3	DYDC2	10	82126743	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1061407	82126743	53408004	1342	40336											
SH2D4B	387694	broad.mit.edu	37	chr10	82331222	82331222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatcaccaagaagttccGggatgctctggccaatgaga	12	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82331222	T	T	82331222	3	4	24	1	0	0	0	0	1	0	0	0	14349	1116	39	1	434	1	SH2D4B	10	82331222	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	204479	82331222	53203525	1343	40337											
NRG3	10718	broad.mit.edu	37	chr10	84745048	84745048	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgcaaatgccagggatttCtgaagtcaaaagcatcaaat	8	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84745048	A	A	84745048	3	1	24	1	0	0	0	0	1	0	0	0	10744	913	32	3	2056	3	NRG3	10	84745048	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2413826	84745048	50789699	1344	40338											
GRID1	2894	broad.mit.edu	37	chr10	87406931	87406931	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtggccctgttacagtgcAcgtgcccaagcgccagctcc	11	17	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87406931	C	C	87406931	1	2	24	0	1	0	0	0	0	0	0	0	6837	174	6	5		5	GRID1	10	87406931	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2661883	87406931	48127816	1345	40339											
HECTD2	143279	broad.mit.edu	37	chr10	93247544	93247544	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatcgcaagggtaagtcaGctataaaaacatatttatgc	7	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93247544	T	T	93247544	1	4	24	0	1	0	0	0	0	0	0	0	7107	986	34	3		3	HECTD2	10	93247544	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5840613	93247544	42287203	1346	40340											
PPP1R3C	5507	broad.mit.edu	37	chr10	93390350	93390350	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggagaagacatggatcgcAgtgagagagaggcccttgga	16	7	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93390350	T	T	93390350	2	4	24	1	0	0	0	0	0	0	0	1	12474	175	7	5		5	PPP1R3C	10	93390350	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	142806	93390350	42144397	1347	40341											
PLCE1	51196	broad.mit.edu	37	chr10	96014438	96014438	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacctggacatcttatttAtttttgaagcttcccagaca	8	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96014438	C	C	96014438	1	2	24	0	1	0	0	0	0	0	0	0	12129	464	16	5		5	PLCE1	10	96014438	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2624088	96014438	39520309	1348	40342											
CYP2C19	1557	broad.mit.edu	37	chr10	96609839	96609839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataaatttatttccctttGtgtttcagggtacaagataa	6	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96609839	T	T	96609839	1	4	24	0	1	0	0	0	0	0	0	0	4199	1392	48	3		3	CYP2C19	10	96609839	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	595401	96609839	38924908	1349	40343											
ALDH18A1	5832	broad.mit.edu	37	chr10	97413148	97413148	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaacatgctgcgatgtggtCactaaccaaagtatctgcag	9	10	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97413148	A	A	97413148	1	1	24	0	1	0	0	0	0	0	0	0	489	841	29	3		3	ALDH18A1	10	97413148	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	803309	97413148	38121599	1350	40344											
BLNK	29760	broad.mit.edu	37	chr10	98006725	98006725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatataattaagtatttaaaTagaggcgaacttactttttg	6	3	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98006725	C	C	98006725	1	2	24	0	1	0	0	0	0	0	0	0	1453	1421	49	5		5	BLNK	10	98006725	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	593577	98006725	37528022	1351	40345											
PIK3AP1	118788	broad.mit.edu	37	chr10	98411166	98411166	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagtgaagatggtcagatCtgaaatccagctctcttcca	8	9	3	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98411166	T	T	98411166	1	4	24	0	1	0	0	0	0	0	0	0	12003	928	32	4		4	PIK3AP1	10	98411166	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	404441	98411166	37123581	1352	40346											
SLIT1	6585	broad.mit.edu	37	chr10	98816305	98816305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcaccttcttcagtccCggcctgcgttattacaggga	11	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98816305	A	A	98816305	1	1	24	0	1	0	0	0	0	0	0	0	14853	667	23	1		1	SLIT1	10	98816305	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	405139	98816305	36718442	1353	40347											
CUTC	51076	broad.mit.edu	37	chr10	101502783	101502783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctattacttaccttctaccAtatatacatttttcttctca	1	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101502783	G	G	101502783	1	3	24	0	1	0	0	0	0	0	0	0	4096	232	8	5		5	CUTC	10	101502783	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2686478	101502783	34031964	1354	40348											
PKD2L1	9033	broad.mit.edu	37	chr10	102053073	102053073	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaagttgcagctcatcctTctgtccagccagctcctcct	7	15	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102053073	A	A	102053073	4	1	24	1	0	0	0	0	0	1	0	0	12062	1792	62	5	722	5	PKD2L1	10	102053073	Nonsense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	550290	102053073	33481674	1355	40349											
SEC31B	25956	broad.mit.edu	37	chr10	102249491	102249491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtttcccctgggggctGgggcttctttccaggaatct	15	10	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102249491	T	T	102249491	3	4	24	1	0	0	0	0	1	0	0	0	14112	1348	47	2	566	2	SEC31B	10	102249491	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	196418	102249491	33285256	1356	40350											
BTRC	8945	broad.mit.edu	37	chr10	103298106	103298106	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccgtgctcctgcagggaCactctgtctacggacccttg	10	17	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103298106	T	T	103298106	3	4	24	1	0	0	0	0	1	0	0	0	1579	478	17	4	1684	4	BTRC	10	103298106	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1048615	103298106	32236641	1357	40351											
C10orf76	79591	broad.mit.edu	37	chr10	103750513	103750513	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattcatatacacttatttTatataacgcattttgtgtaa	3	5	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103750513	C	C	103750513	1	2	24	0	1	0	0	0	0	0	0	0	1627	1769	61	5		5	C10orf76	10	103750513	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	452407	103750513	31784234	1358	40352											
PPRC1	23082	broad.mit.edu	37	chr10	103899474	103899474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacagaggctgctgtgccCaaggtaaccctctgctctga	12	12	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103899474	A	A	103899474	2	1	24	1	0	0	0	0	0	0	0	1	12511	581	21	2		2	PPRC1	10	103899474	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	148961	103899474	31635273	1359	40353											
PCGF6	84108	broad.mit.edu	37	chr10	105108402	105108402	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggtcaataatttattcCaactatataacttcaagctt	5	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105108402	T	T	105108402	1	4	24	0	1	0	0	0	0	0	0	0	11672	609	21	4		4	PCGF6	10	105108402	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1208928	105108402	30426345	1360	40354											
ITPRIP	85450	broad.mit.edu	37	chr10	106075105	106075105	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgtagccctggcgatcCaggggcactgagcggccgga	17	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106075105	A	A	106075105	2	1	24	1	0	0	0	0	0	0	0	1	7993	581	21	2		2	ITPRIP	10	106075105	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	966703	106075105	29459642	1361	40355											
SORCS3	22986	broad.mit.edu	37	chr10	106974204	106974204	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcaattctacttaggtatCggcggattgtgtccaacaac	9	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106974204	A	A	106974204	2	1	24	1	0	0	0	0	0	0	0	1	15046	875	31	3		3	SORCS3	10	106974204	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	899099	106974204	28560543	1362	40356											
SORCS1	114815	broad.mit.edu	37	chr10	108380238	108380238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggtgcccacttggctgGgccacagcactgccgtcgca	14	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108380238	T	T	108380238	3	4	24	1	0	0	0	0	1	0	0	0	15044	1232	43	2	1024	2	SORCS1	10	108380238	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1406034	108380238	27154509	1363	40357											
SORCS1	114815	broad.mit.edu	37	chr10	108427576	108427576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgctgttaggaaagagcCgagaaaaacctttcactagg	11	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108427576	A	A	108427576	1	1	24	0	1	0	0	0	0	0	0	0	15044	667	23	1		1	SORCS1	10	108427576	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	47338	108427576	27107171	1364	40358											
SORCS1	114815	broad.mit.edu	37	chr10	108439016	108439016	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagggtattttcttacctGtctccaggtgttccctgcat	8	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108439016	C	C	108439016	3	2	24	1	0	0	0	0	1	0	0	0	15044	1386	48	4	2062	4	SORCS1	10	108439016	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	11440	108439016	27095731	1365	40359											
SORCS1	114815	broad.mit.edu	37	chr10	108536424	108536424	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcaataaactgctctcAatctccgggtctgtgagtaa	8	10	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108536424	G	G	108536424	2	3	24	1	0	0	0	0	0	0	0	1	15044	126	5	5		5	SORCS1	10	108536424	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	97408	108536424	26998323	1366	40360											
ATRNL1	26033	broad.mit.edu	37	chr10	116930951	116930951	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggagggacattcagcaCatattatggagttggatagt	13	5	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116930951	T	T	116930951	3	4	24	1	0	0	0	0	1	0	0	0	1211	478	17	4	1279	4	ATRNL1	10	116930951	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	8394527	116930951	18603796	1367	40361											
KIAA1598	57698	broad.mit.edu	37	chr10	118666150	118666150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcttactactgctatctgCttctgctgtcacctttctgc	7	14	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118666150	A	A	118666150	3	1	24	1	0	0	0	0	1	0	0	0	8316	797	28	3	439	3	KIAA1598	10	118666150	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1735199	118666150	16868597	1368	40362											
FGFR2	2263	broad.mit.edu	37	chr10	123246893	123246893	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actctgatgagtgtatactcTatcaaacagggcttctggag	10	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123246893	C	C	123246893	3	2	24	1	0	0	0	0	1	0	0	0	5923	1530	53	5	553	5	FGFR2	10	123246893	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	4580743	123246893	12287854	1369	40363											
TACC2	10579	broad.mit.edu	37	chr10	123846949	123846949	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggttttgactgtgcctgAggccaacagtgagccctgga	15	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123846949	T	T	123846949	3	4	24	1	0	0	0	0	1	0	0	0	15621	304	11	5	4944	5	TACC2	10	123846949	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	600056	123846949	11687798	1370	40364											
DMBT1	1755	broad.mit.edu	37	chr10	124330323	124330323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgtgtttccagcccttGcttcagagctgacgaagcca	10	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124330323	T	T	124330323	1	4	24	0	1	0	0	0	0	0	0	0	4617	1334	46	3		3	DMBT1	10	124330323	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	483374	124330323	11204424	1371	40365											
DMBT1	1755	broad.mit.edu	37	chr10	124402585	124402585	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctggtacaactgagtcaTgaaggaagaatcgggccttg	12	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124402585	G	G	124402585	1	3	24	0	1	0	0	0	0	0	0	0	4617	1479	51	5		5	DMBT1	10	124402585	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	72262	124402585	11132162	1372	40366											
CUZD1	50624	broad.mit.edu	37	chr10	124595771	124595771	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttggtctgcaagttgggtCttttagttgcaagttattcc	10	6	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124595771	T	T	124595771	3	4	24	1	0	0	0	0	1	0	0	0	4099	913	32	4	926	4	CUZD1	10	124595771	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	193186	124595771	10938976	1373	40367											
ACADSB	36	broad.mit.edu	37	chr10	124806910	124806910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggagggaatcccttcagGgggattttaatgggagatgg	16	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124806910	T	T	124806910	1	4	24	0	1	0	0	0	0	0	0	0	115	1247	43	2		2	ACADSB	10	124806910	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	211139	124806910	10727837	1374	40368											
C10orf90	118611	broad.mit.edu	37	chr10	128147646	128147646	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgtgaactgcttcttgctGgtgcggatgggaaggaggct	16	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128147646	T	T	128147646	2	4	24	1	0	0	0	0	0	0	0	1	1634	1335	47	2		2	C10orf90	10	128147646	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	3340736	128147646	7387101	1375	40369											
DPYSL4	10570	broad.mit.edu	37	chr10	134015467	134015467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcctctgggaagatggaCgagaatgagttcgtcgcggt	16	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134015467	A	A	134015467	3	1	24	1	0	0	0	0	1	0	0	0	4789	535	19	3	1170	3	DPYSL4	10	134015467	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5867821	134015467	1519280	1376	40370											
C10orf93	255352	broad.mit.edu	37	chr10	134752117	134752117	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagctcagcacgccactccTtgtcttcctcctcagtctga	6	17	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134752117	C	C	134752117	3	2	24	1	0	0	0	0	1	0	0	0	1636	1609	56	5	725	5	C10orf93	10	134752117	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	736650	134752117	782630	1377	40371											
C10orf93	255352	broad.mit.edu	37	chr10	134752355	134752355	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtctccggagcccctcccagGaggggcctcaggtcctctcc	12	18	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134752355	T	T	134752355	1	4	24	0	1	0	0	0	0	0	0	0	1636	1189	41	3		3	C10orf93	10	134752355	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	238	134752355	782392	1378	40372											
GPR123	84435	broad.mit.edu	37	chr10	134896297	134896297	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgtaagcctggatgcGtgtgccagggccttgcgctg	14	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134896297	C	C	134896297	3	2	24	1	0	0	0	0	1	0	0	0	6702	1160	40	4		4	GPR123	10	134896297	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	143942	134896297	638450	1379	40373											
TUBGCP2	10844	broad.mit.edu	37	chr10	135103475	135103475	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcgaccataaactcacTaaaaccacagggagcgcttc	6	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135103475	A	A	135103475	5	1	24	1	0	0	0	0	0	0	1	0	16892	1536	53	5	1535	5	TUBGCP2	10	135103475	Splice_Site	SNP	T	TCGA-05-4427-01A-21D-1855-08	207178	135103475	431272	1380	40374											
PRAP1	118471	broad.mit.edu	37	chr10	135164842	135164842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccaggtgtcctccaccCgcgtggactgtggcccagcc	11	19	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135164842	A	A	135164842	1	1	24	0	1	0	0	0	0	0	0	0	12547	667	23	1		1	PRAP1	10	135164842	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	61367	135164842	369905	1381	40375											
CYP2E1	1571	broad.mit.edu	37	chr10	135371432	135371432	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcagggtctctgtagggaGagcaacagggccctatgaga	14	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135371432	A	A	135371432	1	1	24	0	1	0	0	0	0	0	0	0	4203	957	33	4		4	CYP2E1	10	135371432	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	206590	135371432	163315	1382	40376											
SCGB1C1	147199	broad.mit.edu	37	chr11	193654	193654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctggggcaggtccagggCtgtggttgcaccagagtcac	16	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193654	A	A	193654	1	1	24	0	1	0	0	0	0	0	0	0	14007	812	28	3		3	SCGB1C1	11	193654	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08		193654	134812862	1383	40377											
B4GALNT4	338707	broad.mit.edu	37	chr11	373322	373322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagccctggtgtcgtcccGggcctcctgcagctcagtca	11	18	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	373322	T	T	373322	1	4	24	0	1	0	0	0	0	0	0	0	1274	1131	39	1		1	B4GALNT4	11	373322	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	179668	373322	134633194	1384	40378											
PHRF1	57661	broad.mit.edu	37	chr11	587399	587399	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaacgcattcagagaccagGccgtggggacgccggagaac	14	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	587399	C	C	587399	3	2	24	1	0	0	0	0	1	0	0	0	11956	1203	42	4	365	4	PHRF1	11	587399	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	214077	587399	134419117	1385	40379											
EPS8L2	64787	broad.mit.edu	37	chr11	726431	726431	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccagccgctcacctacgaGtcgggtccggacgaggtccg	14	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	726431	C	C	726431	3	2	24	1	0	0	0	0	1	0	0	0	5238	1020	36	4	1951	4	EPS8L2	11	726431	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	139032	726431	134280085	1386	40380											
CARS	833	broad.mit.edu	37	chr11	3038592	3038592	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatagaaattccccatgtgGccaggcgcagtggctcacgc	11	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3038592	C	C	3038592	1	2	24	0	1	0	0	0	0	0	0	0	2683	1218	42	4		4	CARS	11	3038592	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2312161	3038592	131967924	1387	40381											
MRGPRE	116534	broad.mit.edu	37	chr11	3249691	3249691	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccacgctgacggccgccagGagactcaggcccacgatgta	12	15	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3249691	T	T	3249691	2	4	24	1	0	0	0	0	0	0	0	1	9858	1161	41	3		3	MRGPRE	11	3249691	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	211099	3249691	131756825	1388	40382											
STIM1	6786	broad.mit.edu	37	chr11	4103450	4103450	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaagcagagaaggagctaGaatctcacagctcatggtat	12	7	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4103450	T	T	4103450	4	4	24	1	0	0	0	0	0	1	0	0	15401	943	33	3	1036	3	STIM1	11	4103450	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	853759	4103450	130903066	1389	40383											
OR52K2	119774	broad.mit.edu	37	chr11	4471181	4471181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatctatggcatcgctgtGgccatgtttattgtggtgtt	11	6	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4471181	T	T	4471181	2	4	24	1	0	0	0	0	0	0	0	1	11218	1335	47	2		2	OR52K2	11	4471181	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	367731	4471181	130535335	1390	40384											
OR51F1	256892	broad.mit.edu	37	chr11	4790663	4790663	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaggcttaaggagcaaaAgtagtggcaatattagtact	12	4	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4790663	C	C	4790663	3	2	24	1	0	0	0	0	1	0	0	0	11190	72	3	5	456	5	OR51F1	11	4790663	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	319482	4790663	130215853	1391	40385											
OR51F2	119694	broad.mit.edu	37	chr11	4843196	4843196	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttcacattcttactgctAccatgttgatctcatccaac	3	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4843196	G	G	4843196	3	3	24	1	0	0	0	0	1	0	0	0	11191	391	14	5	583	5	OR51F2	11	4843196	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	52533	4843196	130163320	1392	40386											
OR51F2	119694	broad.mit.edu	37	chr11	4843569	4843569	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagattcaaaaggccattatCaaggtcttaattcagaagca	7	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4843569	T	T	4843569	2	4	24	1	0	0	0	0	0	0	0	1	11191	816	29	4		4	OR51F2	11	4843569	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	373	4843569	130162947	1393	40387											
OR51G1	79324	broad.mit.edu	37	chr11	4945572	4945572	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaagaagaattgtcatagCtttacaatcttggactcaga	7	6	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4945572	A	A	4945572	1	1	24	0	1	0	0	0	0	0	0	0	11192	812	28	3		3	OR51G1	11	4945572	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	102003	4945572	130060944	1394	40388											
HBB	3043	broad.mit.edu	37	chr11	5247008	5247008	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attagcaaaagggcctagctTggactcagaataatccagcc	9	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5247008	A	A	5247008	1	1	24	0	1	0	0	0	0	0	0	0	7044	1827	63	5		5	HBB	11	5247008	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	301436	5247008	129759508	1395	40389											
HBB	3043	broad.mit.edu	37	chr11	5247887	5247887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcccttgaggttgtccaGgtgagccaggccatcactaa	13	11	1	2	rs33918483		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5247887	T	T	5247887	3	4	24	1	0	0	0	0	1	0	0	0	7044	991	35	2	216	2	HBB	11	5247887	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	879	5247887	129758629	1396	40390											
HBB	3043	broad.mit.edu	37	chr11	5248060	5248060	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatagaccaataggcagAgagagtcagtgcctatcaga	11	7	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5248060	T	T	5248060	1	4	24	0	1	0	0	0	0	0	0	0	7044	319	11	5		5	HBB	11	5248060	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	173	5248060	129758456	1397	40391											
HBG1	3047	broad.mit.edu	37	chr11	5269692	5269692	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccgaaatggattgccaaaAcggtcaccagcacatttccc	8	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5269692	T	T	5269692	3	4	24	1	0	0	0	0	1	0	0	0	7048	43	2	5	106	5	HBG1	11	5269692	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	21632	5269692	129736824	1398	40392											
HBG2	3048	broad.mit.edu	37	chr11	5274610	5274610	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccgaaatggattgccaaaAcggtcaccagcacatttccc	8	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5274610	T	T	5274610	1	4	24	0	1	0	0	0	0	0	0	0	7049	43	2	5		5	HBG2	11	5274610	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	4918	5274610	129731906	1399	40393											
HBG2	3048	broad.mit.edu	37	chr11	5275443	5275443	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaacagctcacaccctgCtgtgctcagatcaatactca	5	14	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5275443	G	G	5275443	1	3	24	0	1	0	0	0	0	0	0	0	7049	812	28	4		4	HBG2	11	5275443	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	833	5275443	129731073	1400	40394											
OR51I1	390063	broad.mit.edu	37	chr11	5462407	5462407	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccagcagtatgcctgacTccatgaaggagaaagtgtgg	14	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5462407	C	C	5462407	3	2	24	1	0	0	0	0	1	0	0	0	11194	1551	54	5	610	5	OR51I1	11	5462407	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	186964	5462407	129544109	1401	40395											
DNHD1	144132	broad.mit.edu	37	chr11	6530210	6530210	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacatcctgtggaaggtagcGagacgatgacactgggtacc	13	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6530210	T	T	6530210	4	4	24	1	0	0	0	0	0	1	0	0	4708	1059	37	3	1031	3	DNHD1	11	6530210	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1067803	6530210	128476306	1402	40396											
OR6A2	8590	broad.mit.edu	37	chr11	6816387	6816387	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgagcaatggagagacatCacagaaaaagtggttgatga	13	4	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6816387	A	A	6816387	3	1	24	1	0	0	0	0	1	0	0	0	11280	826	29	3	434	3	OR6A2	11	6816387	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	286177	6816387	128190129	1403	40397											
OR10A2	341276	broad.mit.edu	37	chr11	6891205	6891205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgctggggaccctgcttGcccaggacacaaccatctcc	9	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6891205	T	T	6891205	3	4	24	1	0	0	0	0	1	0	0	0	10984	1319	46	3	222	3	OR10A2	11	6891205	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	74818	6891205	128115311	1404	40398											
ZNF215	7762	broad.mit.edu	37	chr11	6977658	6977658	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattcgacaccaaatgattCacacgggagagaaaccattc	7	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6977658	G	G	6977658	3	3	24	1	0	0	0	0	1	0	0	0	17897	826	29	4	1468	4	ZNF215	11	6977658	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	86453	6977658	128028858	1405	40399											
ZNF215	7762	broad.mit.edu	37	chr11	6977683	6977683	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagagaaaccattcaaatGtaaggaatgtagtaaagcct	11	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6977683	A	A	6977683	3	1	24	1	0	0	0	0	1	0	0	0	17897	1377	48	4	1493	4	ZNF215	11	6977683	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	25	6977683	128028833	1406	40400											
NLRP10	338322	broad.mit.edu	37	chr11	7982455	7982455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgcctcagaatctctGtgacaggggcttgattgtcc	12	11	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7982455	T	T	7982455	3	4	24	1	0	0	0	0	1	0	0	0	10567	1377	48	3	1267	3	NLRP10	11	7982455	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1004772	7982455	127024061	1407	40401											
NLRP10	338322	broad.mit.edu	37	chr11	7984702	7984702	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctggaaatgccatggtggGaggggagtcccagtgccatc	15	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7984702	T	T	7984702	1	4	24	0	1	0	0	0	0	0	0	0	10567	1189	41	3		3	NLRP10	11	7984702	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2247	7984702	127021814	1408	40402											
IPO7	10527	broad.mit.edu	37	chr11	9466700	9466700	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgctccagttgtgccaAgttctttcaattttggaggc	10	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9466700	T	T	9466700	3	4	24	1	0	0	0	0	1	0	0	0	7867	72	3	5	3174	5	IPO7	11	9466700	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1481998	9466700	125539816	1409	40403											
WEE1	7465	broad.mit.edu	37	chr11	9598729	9598729	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatgctcatgcagtgcttGgacagcattctcatgtagtt	9	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9598729	T	T	9598729	4	4	24	1	0	0	0	0	0	1	0	0	17471	1349	47	2	1078	2	WEE1	11	9598729	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	132029	9598729	125407787	1410	40404											
SBF2	81846	broad.mit.edu	37	chr11	9981217	9981217	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggttcacttgcagcgcagTcttgcttgagtaccatcgat	11	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9981217	A	A	9981217	1	1	24	0	1	0	0	0	0	0	0	0	13971	1682	58	5		5	SBF2	11	9981217	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	382488	9981217	125025299	1411	40405											
PSMA1	5682	broad.mit.edu	37	chr11	14535931	14535931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttcatatccataaatgCtaacataaaaaggatactgc	5	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14535931	A	A	14535931	1	1	24	0	1	0	0	0	0	0	0	0	12772	797	28	3		3	PSMA1	11	14535931	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4554714	14535931	120470585	1412	40406											
PDE3B	5140	broad.mit.edu	37	chr11	14880790	14880790	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcgcagaattcaatgccAaggtttgttatgaaaattag	8	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14880790	T	T	14880790	4	4	24	1	0	0	0	0	0	1	0	0	11732	131	5	5	2772	5	PDE3B	11	14880790	Nonsense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	344859	14880790	120125726	1413	40407											
INSC	387755	broad.mit.edu	37	chr11	15242878	15242879	+	Intron	DNP	GG	TT	TT													cttatcactggattgtccctGgttccacatggggtcctggg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15242879	TT	TT	15242878	1	4	24	0	1	0	0	0	0	0	0	0	7834	1363	47	2		2	INSC	11	15242878	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	362088	15242878	119763638	1414	40408											
SOX6	55553	broad.mit.edu	37	chr11	16067945	16067945	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaagtacaagacagccctCaagctggaagcccaaatcta	8	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16067945	A	A	16067945	1	1	24	0	1	0	0	0	0	0	0	0	15069	841	29	3		3	SOX6	11	16067945	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	825067	16067945	118938571	1415	40409											
NUCB2	4925	broad.mit.edu	37	chr11	17316822	17316822	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcggaatgcatgtatataGagttaaaacattattcatga	7	4	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17316822	T	T	17316822	1	4	24	0	1	0	0	0	0	0	0	0	10814	957	33	3		3	NUCB2	11	17316822	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1248877	17316822	117689694	1416	40410											
LDHC	3948	broad.mit.edu	37	chr11	18436798	18436798	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagggagaaatgatggatcTtcagcatggcagtcttttct	12	6	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18436798	G	G	18436798	3	3	24	1	0	0	0	0	1	0	0	0	8774	1609	56	5	200	5	LDHC	11	18436798	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1119976	18436798	116569718	1417	40411											
IGSF22	283284	broad.mit.edu	37	chr11	18735787	18735787	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcttgtaggtgggccaggCatggttgagctttgcctacc	15	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18735787	T	T	18735787	1	4	24	0	1	0	0	0	0	0	0	0	7670	725	25	4		4	IGSF22	11	18735787	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	298989	18735787	116270729	1418	40412											
PTPN5	84867	broad.mit.edu	37	chr11	18759424	18759424	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctctgggacagtgagtactCactgggaagtatggttttgt	13	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18759424	A	A	18759424	1	1	24	0	1	0	0	0	0	0	0	0	12899	841	29	3		3	PTPN5	11	18759424	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	23637	18759424	116247092	1419	40413											
HTATIP2	10553	broad.mit.edu	37	chr11	20398289	20398289	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagtttctgtttttcatAcactttggagaaccctagct	7	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20398289	T	T	20398289	1	4	24	0	1	0	0	0	0	0	0	0	7502	406	14	5		5	HTATIP2	11	20398289	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1638865	20398289	114608227	1420	40414											
NELL1	4745	broad.mit.edu	37	chr11	21191311	21191311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcctaggcattgaggtGgcggtggagtccctcctgcc	14	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21191311	T	T	21191311	1	4	24	0	1	0	0	0	0	0	0	0	10428	1363	47	2		2	NELL1	11	21191311	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	793022	21191311	113815205	1421	40415											
NELL1	4745	broad.mit.edu	37	chr11	21592381	21592381	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgacctattctgttgcccAgaatgtgacaccagagtcac	9	12	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21592381	G	G	21592381	2	3	24	1	0	0	0	0	0	0	0	1	10428	175	7	5		5	NELL1	11	21592381	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	401070	21592381	113414135	1422	40416											
SLC17A6	57084	broad.mit.edu	37	chr11	22397598	22397598	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaggggtagcaatctcattCttggtacttgcagtgggatt	13	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22397598	A	A	22397598	3	1	24	1	0	0	0	0	1	0	0	0	14534	912	32	3	1283	3	SLC17A6	11	22397598	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	805217	22397598	112608918	1423	40417											
LUZP2	338645	broad.mit.edu	37	chr11	24784928	24784928	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgcacatataaagttgccActagtttggagtattaaaca	7	6	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24784928	T	T	24784928	1	4	24	0	1	0	0	0	0	0	0	0	9174	174	6	5		5	LUZP2	11	24784928	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2387330	24784928	110221588	1424	40418											
ANO3	63982	broad.mit.edu	37	chr11	26547293	26547293	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaaataagaagatatttGattccccatatcagcagttg	6	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26547293	T	T	26547293	1	4	24	0	1	0	0	0	0	0	0	0	698	1305	45	3		3	ANO3	11	26547293	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1762365	26547293	108459223	1425	40419											
METT5D1	196074	broad.mit.edu	37	chr11	28134865	28134865	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttaatttttttttctagAtttgtttacctacaaaatgc	3	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28134865	G	G	28134865	1	3	24	0	1	0	0	0	0	0	0	0	9585	347	12	5		5	METT5D1	11	28134865	5'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	1587572	28134865	106871651	1426	40420											
KCNA4	3739	broad.mit.edu	37	chr11	30033267	30033267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaggcaaaagatgacaatgGagattaagatgaccaggacg	12	7	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30033267	T	T	30033267	3	4	24	1	0	0	0	0	1	0	0	0	8075	1174	41	3	1006	3	KCNA4	11	30033267	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1898402	30033267	104973249	1427	40421											
KCNA4	3739	broad.mit.edu	37	chr11	30033321	30033321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccttgcaggactggagCtctctggatattcaaagagg	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30033321	A	A	30033321	3	1	24	1	0	0	0	0	1	0	0	0	8075	797	28	3	1060	3	KCNA4	11	30033321	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	54	30033321	104973195	1428	40422											
DCDC1	341019	broad.mit.edu	37	chr11	31312225	31312225	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttttcccactgtaatcTcatgcccatcctgccccatg	4	16	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31312225	C	C	31312225	3	2	24	1	0	0	0	0	1	0	0	0	4317	1551	54	5	147	5	DCDC1	11	31312225	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1278904	31312225	103694291	1429	40423											
CD44	960	broad.mit.edu	37	chr11	35219769	35219769	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggatcaggcattgatgatGatgaagattttatctccagc	10	7	2	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35219769	T	T	35219769	3	4	24	1	0	0	0	0	1	0	0	0	3047	1290	45	3	924	3	CD44	11	35219769	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3907544	35219769	99786747	1430	40424											
SLC1A2	6506	broad.mit.edu	37	chr11	35308338	35308338	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctccatccaggacaaCaccattcatttgggctataa	6	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35308338	G	G	35308338	3	3	24	1	0	0	0	0	1	0	0	0	14545	478	17	4	488	4	SLC1A2	11	35308338	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	88569	35308338	99698178	1431	40425											
LDLRAD3	143458	broad.mit.edu	37	chr11	36057708	36057708	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtgcaacataccaggcaaCttcatgtgcagcaatggacg	11	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36057708	G	G	36057708	3	3	24	1	0	0	0	0	1	0	0	0	8779	564	20	4	108	4	LDLRAD3	11	36057708	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	749370	36057708	98948808	1432	40426											
PRR5L	79899	broad.mit.edu	37	chr11	36458870	36458870	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggaactgtcttctggcctCtcctacaagtaatgacgaat	9	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36458870	G	G	36458870	1	3	24	0	1	0	0	0	0	0	0	0	12708	928	32	4		4	PRR5L	11	36458870	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	401162	36458870	98547646	1433	40427											
TTC17	55761	broad.mit.edu	37	chr11	43425763	43425763	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaaagcagtggccctcaAcctcactgattaatatggcc	7	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43425763	C	C	43425763	1	2	24	0	1	0	0	0	0	0	0	0	16810	58	2	5		5	TTC17	11	43425763	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	6966893	43425763	91580753	1434	40428											
ALKBH3	221120	broad.mit.edu	37	chr11	43919272	43919273	+	Intron	DNP	GG	TT	TT													aagaactcactgaattctcgGgaacgtactttgcacattga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43919273	TT	TT	43919272	1	4	24	0	1	0	0	0	0	0	0	0	528	1247	43	2		2	ALKBH3	11	43919272	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	493509	43919272	91087244	1435	40429											
ACCSL	390110	broad.mit.edu	37	chr11	44073120	44073120	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctccctgtgcctgttctGcccagggggatggagaaagc	15	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44073120	A	A	44073120	1	1	24	0	1	0	0	0	0	0	0	0	134	1334	46	4		4	ACCSL	11	44073120	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	153848	44073120	90933396	1436	40430											
ACCS	84680	broad.mit.edu	37	chr11	44101139	44101139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccgtgtttgagaagtctGttgggtaccgcagtgtccta	13	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44101139	T	T	44101139	3	4	24	1	0	0	0	0	1	0	0	0	133	1377	48	3	926	3	ACCS	11	44101139	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	28019	44101139	90905377	1437	40431											
F2	2147	broad.mit.edu	37	chr11	46760790	46760790	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccttgaacttgactctatTggaaacctcatctttcttct	5	11	5	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46760790	C	C	46760790	1	2	24	0	1	0	0	0	0	0	0	0	5385	1827	63	5		5	F2	11	46760790	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2659651	46760790	88245726	1438	40432											
MYBPC3	4607	broad.mit.edu	37	chr11	47374044	47374044	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaccctggaggactggCtgcccctgtcctggggctca	14	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47374044	G	G	47374044	1	3	24	0	1	0	0	0	0	0	0	0	10107	812	28	4		4	MYBPC3	11	47374044	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	613254	47374044	87632472	1439	40433											
TRIM48	79097	broad.mit.edu	37	chr11	55033073	55033073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatttatggctcttttgCaggagaagcttttaaagaaa	8	5	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55033073	A	A	55033073	1	1	24	0	1	0	0	0	0	0	0	0	16648	725	25	3		3	TRIM48	11	55033073	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	7659029	55033073	79973443	1440	40434											
OR4A15	81328	broad.mit.edu	37	chr11	55135683	55135683	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctactgcatttgctcccaaAatgattgttgacttgctctc	6	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55135683	C	C	55135683	3	2	24	1	0	0	0	0	1	0	0	0	11134	11	1	5	326	5	OR4A15	11	55135683	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	102610	55135683	79870833	1441	40435											
OR4A15	81328	broad.mit.edu	37	chr11	55135949	55135949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttatcagctccctttctGtggacccaatgtcattgaca	6	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55135949	T	T	55135949	3	4	24	1	0	0	0	0	1	0	0	0	11134	1377	48	3	592	3	OR4A15	11	55135949	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	266	55135949	79870567	1442	40436											
OR4C11	219429	broad.mit.edu	37	chr11	55371537	55371537	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagatctccatgcagccaaAtaaatgtagtgcaaagactt	7	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55371537	C	C	55371537	3	2	24	1	0	0	0	0	1	0	0	0	11139	101	4	5	621	5	OR4C11	11	55371537	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	235588	55371537	79634979	1443	40437											
OR4C6	219432	broad.mit.edu	37	chr11	55433215	55433215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctgcacggacacccaCatcctgggcctcttagttac	8	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55433215	A	A	55433215	3	1	24	1	0	0	0	0	1	0	0	0	11146	477	17	3	575	3	OR4C6	11	55433215	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	61678	55433215	79573301	1444	40438											
OR5D18	219438	broad.mit.edu	37	chr11	55587576	55587576	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctggggagtctcatgttcCttggaactgacgtgctctgc	13	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587576	T	T	55587576	2	4	24	1	0	0	0	0	0	0	0	1	11251	668	24	4		4	OR5D18	11	55587576	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	154361	55587576	79418940	1445	40439											
OR5L2	26338	broad.mit.edu	37	chr11	55595192	55595192	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgtccttagctcttaggatCctcttctatagatctaatgt	6	10	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595192	A	A	55595192	2	1	24	1	0	0	0	0	0	0	0	1	11265	845	30	3		3	OR5L2	11	55595192	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	7616	55595192	79411324	1446	40440											
OR5L2	26338	broad.mit.edu	37	chr11	55595308	55595308	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgttcctggtggccacttTgaatgagagtgttaccatca	11	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55595308	G	G	55595308	3	3	24	1	0	0	0	0	1	0	0	0	11265	1821	63	5	616	5	OR5L2	11	55595308	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	116	55595308	79411208	1447	40441											
OR5D16	390144	broad.mit.edu	37	chr11	55606301	55606301	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctcagattacctggaacTgcaaattcccctcttctttg	5	13	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55606301	A	A	55606301	3	1	24	1	0	0	0	0	1	0	0	0	11250	1580	55	5	76	5	OR5D16	11	55606301	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	10993	55606301	79400215	1448	40442											
OR5F1	338674	broad.mit.edu	37	chr11	55761719	55761719	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggagtaaagcagcgggCgacatatggccgcatacctg	13	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55761719	T	T	55761719	3	4	24	1	0	0	0	0	1	0	0	0	11252	768	27	4	564	4	OR5F1	11	55761719	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	155418	55761719	79244797	1449	40443											
OR8I2	120586	broad.mit.edu	37	chr11	55861488	55861488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcagcaggcaggcagaaGgccttctccacctgcgcatc	11	15	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55861488	T	T	55861488	3	4	24	1	0	0	0	0	1	0	0	0	11334	991	35	2	707	2	OR8I2	11	55861488	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	99769	55861488	79145028	1450	40444											
OR8I2	120586	broad.mit.edu	37	chr11	55861600	55861600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgacccaggcgcaggtgGcatctgtattctatacgatt	11	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55861600	T	T	55861600	3	4	24	1	0	0	0	0	1	0	0	0	11334	1203	42	3	819	3	OR8I2	11	55861600	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	112	55861600	79144916	1451	40445											
OR8H2	390151	broad.mit.edu	37	chr11	55872600	55872600	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaagagatccagatggctCtgtttatgctatttctcctg	9	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55872600	A	A	55872600	3	1	24	1	0	0	0	0	1	0	0	0	11332	912	32	3	84	3	OR8H2	11	55872600	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	11000	55872600	79133916	1452	40446											
OR8K1	390157	broad.mit.edu	37	chr11	56113544	56113544	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggtaaaacacaatcacacGgcagtgaccaaggtgactga	11	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56113544	C	C	56113544	2	2	24	1	0	0	0	0	0	0	0	1	11337	1103	39	4		4	OR8K1	11	56113544	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	240944	56113544	78892972	1453	40447											
OR8J1	219477	broad.mit.edu	37	chr11	56125443	56125443	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctagcgctacttaatggaaGaagatgaagatgcttacaag	11	6	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56125443	T	T	56125443	1	4	24	0	1	0	0	0	0	0	0	0	11335	957	33	3		3	OR8J1	11	56125443	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	11899	56125443	78881073	1454	40448											
APLNR	187	broad.mit.edu	37	chr11	57004350	57004350	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaccagaccgttgcccgtGgtgcccaggaggaagaccaa	13	13	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57004350	A	A	57004350	2	1	24	1	0	0	0	0	0	0	0	1	779	1335	47	4		4	APLNR	11	57004350	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	878907	57004350	78002166	1455	40449											
SLC43A3	29015	broad.mit.edu	37	chr11	57185126	57185126	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacagatgcactgctccagtCctcctcctctcctgtgatag	7	15	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57185126	A	A	57185126	1	1	24	0	1	0	0	0	0	0	0	0	14748	870	30	3		3	SLC43A3	11	57185126	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	180776	57185126	77821390	1456	40450											
OR1S2	219958	broad.mit.edu	37	chr11	57971444	57971444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggaagagatacatgggGgtgtgaaggtatatatccaa	14	4	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57971444	A	A	57971444	2	1	24	1	0	0	0	0	0	0	0	1	11067	1219	43	4		4	OR1S2	11	57971444	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	786318	57971444	77035072	1457	40451											
OR5B3	441608	broad.mit.edu	37	chr11	58170623	58170623	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgtaagagatgaccttgTcttctataaggaatccagcc	8	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58170623	G	G	58170623	3	3	24	1	0	0	0	0	1	0	0	0	11246	1667	58	5	686	5	OR5B3	11	58170623	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	199179	58170623	76835893	1458	40452											
OR5B12	390191	broad.mit.edu	37	chr11	58206760	58206760	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacctctttgttcctcaggcTgtagaccagtggattcaaca	8	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58206760	A	A	58206760	3	1	24	1	0	0	0	0	1	0	0	0	11242	1580	55	5	83	5	OR5B12	11	58206760	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	36137	58206760	76799756	1459	40453											
DTX4	23220	broad.mit.edu	37	chr11	58959804	58959804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaaggccctttagggccCttgctcaagtgatctgggaa	14	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58959804	A	A	58959804	1	1	24	0	1	0	0	0	0	0	0	0	4837	696	24	2		2	DTX4	11	58959804	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	753044	58959804	76046712	1460	40454											
MS4A6A	64231	broad.mit.edu	37	chr11	59945699	59945699	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtctaagttttattttgatCcattgggttgtgggttatag	11	3	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59945699	A	A	59945699	1	1	24	0	1	0	0	0	0	0	0	0	9958	870	30	3		3	MS4A6A	11	59945699	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	985895	59945699	75060817	1461	40455											
MS4A6A	64231	broad.mit.edu	37	chr11	59949039	59949039	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacccctctccaacacgttCtgaattagatttaccccaat	3	15	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59949039	A	A	59949039	1	1	24	0	1	0	0	0	0	0	0	0	9958	928	32	3		3	MS4A6A	11	59949039	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3340	59949039	75057477	1462	40456											
SLC15A3	51296	broad.mit.edu	37	chr11	60713987	60713987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttggaggctccctgcacCcagagcccctccttacctgg	11	17	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60713987	A	A	60713987	1	1	24	0	1	0	0	0	0	0	0	0	14513	638	22	2		2	SLC15A3	11	60713987	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	764948	60713987	74292529	1463	40457											
CD6	923	broad.mit.edu	37	chr11	60781146	60781146	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacccggccctggccctgggGagatccccaaggtggaaagg	15	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60781146	A	A	60781146	1	1	24	0	1	0	0	0	0	0	0	0	3058	1189	41	4		4	CD6	11	60781146	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	67159	60781146	74225370	1464	40458											
VWCE	220001	broad.mit.edu	37	chr11	61032536	61032536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaggggagacaggagcCcatgagagccgaggcctggc	19	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61032536	A	A	61032536	1	1	24	0	1	0	0	0	0	0	0	0	17372	638	22	2		2	VWCE	11	61032536	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	251390	61032536	73973980	1465	40459											
MTA2	9219	broad.mit.edu	37	chr11	62361567	62361567	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttagagaacattaagacctCcaggtgaagccccacactgc	8	13	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62361567	T	T	62361567	1	4	24	0	1	0	0	0	0	0	0	0	10003	870	30	4		4	MTA2	11	62361567	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1329031	62361567	72644949	1466	40460											
BSCL2	26580	broad.mit.edu	37	chr11	62458593	62458593	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggacttccttccgggaattGtctctttttcggatgttaac	9	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62458593	C	C	62458593	3	2	24	1	0	0	0	0	1	0	0	0	1536	1368	48	4	378	4	BSCL2	11	62458593	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	97026	62458593	72547923	1467	40461											
NXF1	10482	broad.mit.edu	37	chr11	62569425	62569425	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaacacacccttcggttctCccgatccaaaatcttatagt	4	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62569425	A	A	62569425	4	1	24	1	0	0	0	0	0	1	0	0	10877	864	30	3	1435	3	NXF1	11	62569425	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	110832	62569425	72437091	1468	40462											
SLC22A25	387601	broad.mit.edu	37	chr11	62933577	62933577	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaacatgagaagcatctgGcttagtcgacggctcatgtg	13	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62933577	A	A	62933577	2	1	24	1	0	0	0	0	0	0	0	1	14568	1194	42	4		4	SLC22A25	11	62933577	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	364152	62933577	72072939	1469	40463											
EFEMP2	30008	broad.mit.edu	37	chr11	65637571	65637571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcccaggacccaggagCctggcccagcccagcctcac	10	21	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65637571	A	A	65637571	1	1	24	0	1	0	0	0	0	0	0	0	4982	754	26	3		3	EFEMP2	11	65637571	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2703994	65637571	69368945	1470	40464											
RIN1	9610	broad.mit.edu	37	chr11	66099706	66099706	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaggatttctcagcaggctCagggtctcccgccccgaatg	11	13	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66099706	A	A	66099706	1	1	24	0	1	0	0	0	0	0	0	0	13482	841	29	3		3	RIN1	11	66099706	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	462135	66099706	68906810	1471	40465											
SPTBN2	6712	broad.mit.edu	37	chr11	66475808	66475808	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttagtggaagggacagggTggggagggctcagtggggct	23	4	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66475808	A	A	66475808	1	1	24	0	1	0	0	0	0	0	0	0	15238	1711	59	5		5	SPTBN2	11	66475808	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	376102	66475808	68530708	1472	40466											
TPCN2	219931	broad.mit.edu	37	chr11	68837976	68837976	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgataggtgagtgcaggtAacgtggccagcattttgtga	15	5	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68837976	G	G	68837976	1	3	24	0	1	0	0	0	0	0	0	0	16520	377	13	5		5	TPCN2	11	68837976	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2362168	68837976	66168540	1473	40467											
INPPL1	3636	broad.mit.edu	37	chr11	71946456	71946456	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggctccatgaaggtgcggGtgcccacggagcgcctgggc	18	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71946456	A	A	71946456	3	1	24	1	0	0	0	0	1	0	0	0	7831	1261	44	4	2710	4	INPPL1	11	71946456	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3108480	71946456	63060060	1474	40468											
OR2AT4	341152	broad.mit.edu	37	chr11	74800785	74800785	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacagctggatttctcagaGatgggcagctggaacatcta	11	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74800785	A	A	74800785	1	1	24	0	1	0	0	0	0	0	0	0	11081	957	33	4		4	OR2AT4	11	74800785	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	2854329	74800785	60205731	1475	40469											
C11orf30	56946	broad.mit.edu	37	chr11	76253421	76253421	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatgcagcaggttgtatctCttctttttcttcctatcttc	5	10	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76253421	A	A	76253421	1	1	24	0	1	0	0	0	0	0	0	0	1648	928	32	3		3	C11orf30	11	76253421	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1452636	76253421	58753095	1476	40470											
MYO7A	4647	broad.mit.edu	37	chr11	76925117	76925117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaacacagtagtgtgcGgctgggcctggggtcgtggg	18	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76925117	T	T	76925117	1	4	24	0	1	0	0	0	0	0	0	0	10176	1131	39	1		1	MYO7A	11	76925117	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	671696	76925117	58081399	1477	40471											
C11orf73	51501	broad.mit.edu	37	chr11	86048380	86048380	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaattgtgtgactacaAgtttaatttgaaatgtgtgt	10	2	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86048380	T	T	86048380	1	4	24	0	1	0	0	0	0	0	0	0	1673	87	3	5		5	C11orf73	11	86048380	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	9123263	86048380	48958136	1478	40472											
CCDC81	60494	broad.mit.edu	37	chr11	86133561	86133561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccataccagcttccaagttGggcctccaggaactccagga	10	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86133561	T	T	86133561	1	4	24	0	1	0	0	0	0	0	0	0	2883	1363	47	2		2	CCDC81	11	86133561	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	85181	86133561	48872955	1479	40473											
GRM5	2915	broad.mit.edu	37	chr11	88742218	88742218	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacacctcataaaagataacAtcaatgtctgatccctctta	3	12	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88742218	T	T	88742218	1	4	24	0	1	0	0	0	0	0	0	0	6866	232	8	5		5	GRM5	11	88742218	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2608657	88742218	46264298	1480	40474											
FOLH1B	219595	broad.mit.edu	37	chr11	89395380	89395380	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtattcctgttcatccaGttggatactatgatgcacag	8	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89395380	A	A	89395380	1	1	24	0	1	0	0	0	0	0	0	0	6038	1044	36	4		4	FOLH1B	11	89395380	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	653162	89395380	45611136	1481	40475											
NAALAD2	10003	broad.mit.edu	37	chr11	89883659	89883659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccctatagggagatcttGtatatgtgaactatgctcgc	9	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89883659	T	T	89883659	3	4	24	1	0	0	0	0	1	0	0	0	10222	1377	48	3	511	3	NAALAD2	11	89883659	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	488279	89883659	45122857	1482	40476											
FAT3	120114	broad.mit.edu	37	chr11	92087844	92087844	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcattcaagtggaagccAgagacaaagacttaggttct	9	7	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92087844	G	G	92087844	3	3	24	1	0	0	0	0	1	0	0	0	5748	180	7	5	2568	5	FAT3	11	92087844	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2204185	92087844	42918672	1483	40477											
FAT3	120114	broad.mit.edu	37	chr11	92533467	92533467	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctgattttgaccggttgGaatatagcattttatctggg	11	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92533467	T	T	92533467	4	4	24	1	0	0	0	0	0	1	0	0	5748	1175	41	3	7322	3	FAT3	11	92533467	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	445623	92533467	42473049	1484	40478											
CNTN5	53942	broad.mit.edu	37	chr11	99932087	99932087	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagagctgaaaactcacGtggaaaaaattcctttcgtg	10	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99932087	A	A	99932087	3	1	24	1	0	0	0	0	1	0	0	0	3676	1145	40	4	1154	4	CNTN5	11	99932087	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	7398620	99932087	35074429	1485	40479											
CNTN5	53942	broad.mit.edu	37	chr11	100061783	100061783	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccctagaaatggttttagActtcatcattggttcttact	6	9	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100061783	T	T	100061783	1	4	24	0	1	0	0	0	0	0	0	0	3676	290	10	5		5	CNTN5	11	100061783	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	129696	100061783	34944733	1486	40480											
MMP1	4312	broad.mit.edu	37	chr11	102667943	102667943	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacatgacttcttaccactGtcatgggaaatagctctctc	8	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102667943	C	C	102667943	1	2	24	0	1	0	0	0	0	0	0	0	9741	1392	48	4		4	MMP1	11	102667943	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2606160	102667943	32338573	1487	40481											
DDI1	414301	broad.mit.edu	37	chr11	103907482	103907482	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagcggcaccaacgacgCaggcccgccccagcccgcca	12	20	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103907482	T	T	103907482	1	4	24	0	1	0	0	0	0	0	0	0	4361	725	25	4		4	DDI1	11	103907482	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1239539	103907482	31099034	1488	40482											
GUCY1A2	2977	broad.mit.edu	37	chr11	106856728	106856728	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagcagaaaatcacatactCaacagctatgtttgagtaat	7	7	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106856728	A	A	106856728	1	1	24	0	1	0	0	0	0	0	0	0	6958	841	29	3		3	GUCY1A2	11	106856728	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2949246	106856728	28149788	1489	40483											
PPP2R1B	5519	broad.mit.edu	37	chr11	111636056	111636056	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcacttcgggtcctttctActccaagtgctagggcaatt	8	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111636056	G	G	111636056	3	3	24	1	0	0	0	0	1	0	0	0	12484	391	14	5	1917	5	PPP2R1B	11	111636056	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	4779328	111636056	23370460	1490	40484											
HSPB2	3316	broad.mit.edu	37	chr11	111784229	111784229	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactatgtccggcctcgggcCgccccagctggggagggcag	16	14	0	0	rs4252588	byFrequency;by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111784229	G	G	111784229	2	3	24	1	0	0	0	0	0	0	0	1	7489	639	23	4		4	HSPB2	11	111784229	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	148173	111784229	23222287	1491	40485											
NCAM1	4684	broad.mit.edu	37	chr11	113103425	113103425	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacacttgtaacccaatagcTtcttccttctaaaggtgacc	6	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113103425	G	G	113103425	1	3	24	0	1	0	0	0	0	0	0	0	10297	1624	56	5		5	NCAM1	11	113103425	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1319196	113103425	21903091	1492	40486											
DRD2	1813	broad.mit.edu	37	chr11	113285144	113285144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccattagacttcatgataaCggtgcagagtttcatgtcct	8	10	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113285144	A	A	113285144	3	1	24	1	0	0	0	0	1	0	0	0	4797	536	19	3	580	3	DRD2	11	113285144	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	181719	113285144	21721372	1493	40487											
USP28	57646	broad.mit.edu	37	chr11	113679687	113679687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaaatatactgtgaagaCtgtggcatcacctagccagc	9	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113679687	A	A	113679687	1	1	24	0	1	0	0	0	0	0	0	0	17185	580	20	3		3	USP28	11	113679687	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	394543	113679687	21326829	1494	40488											
HTR3B	9177	broad.mit.edu	37	chr11	113816739	113816739	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccagacagaccaacaggaGgcagagtggctggtcctcct	13	12	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113816739	A	A	113816739	2	1	24	1	0	0	0	0	0	0	0	1	7515	991	35	4		4	HTR3B	11	113816739	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	137052	113816739	21189777	1495	40489											
ZBTB16	7704	broad.mit.edu	37	chr11	114120921	114120921	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtgccttcattgtcccAgaaagttctgttggagcaag	13	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114120921	T	T	114120921	1	4	24	0	1	0	0	0	0	0	0	0	17652	203	7	5		5	ZBTB16	11	114120921	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	304182	114120921	20885595	1496	40490											
SIDT2	51092	broad.mit.edu	37	chr11	117057193	117057193	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacaaagggtggaggacagGgtcatagcgatgagagtgga	19	4	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117057193	C	C	117057193	1	2	24	0	1	0	0	0	0	0	0	0	14416	1247	43	4		4	SIDT2	11	117057193	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2936272	117057193	17949323	1497	40491											
DSCAML1	57453	broad.mit.edu	37	chr11	117309726	117309726	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggaaagccaccaccccttAgcacaagggcggaccctgtg	13	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117309726	T	T	117309726	1	4	24	0	1	0	0	0	0	0	0	0	4809	435	15	5		5	DSCAML1	11	117309726	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	252533	117309726	17696790	1498	40492											
PDZD3	79849	broad.mit.edu	37	chr11	119059606	119059606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccatggatcttgaatccCttcgatcctttgctgcctga	8	14	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119059606	A	A	119059606	1	1	24	0	1	0	0	0	0	0	0	0	11796	696	24	2		2	PDZD3	11	119059606	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1749880	119059606	15946910	1499	40493											
MCAM	4162	broad.mit.edu	37	chr11	119180620	119180620	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcctcagatcgatgtatttCtctccctaaaagtgggtaga	9	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119180620	G	G	119180620	3	3	24	1	0	0	0	0	1	0	0	0	9461	912	32	4	27	4	MCAM	11	119180620	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	121014	119180620	15825896	1500	40494											
MCAM	4162	broad.mit.edu	37	chr11	119180642	119180642	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctccctaaaagtgggtagagGagaagaggggaacacggaga	16	6	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119180642	T	T	119180642	1	4	24	0	1	0	0	0	0	0	0	0	9461	1189	41	3		3	MCAM	11	119180642	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	22	119180642	15825874	1501	40495											
GRIK4	2900	broad.mit.edu	37	chr11	120702643	120702643	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcatgctggatgacacccgGgaccccaccccgctcctcaa	9	19	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120702643	T	T	120702643	2	4	24	1	0	0	0	0	0	0	0	1	6842	1219	43	2		2	GRIK4	11	120702643	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1522001	120702643	14303873	1502	40496											
SORL1	6653	broad.mit.edu	37	chr11	121393650	121393650	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaaagaacttggctagCaagacaaacgtgtacatctc	11	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121393650	G	G	121393650	3	3	24	1	0	0	0	0	1	0	0	0	15048	709	25	4	1590	4	SORL1	11	121393650	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	691007	121393650	13612866	1503	40497											
SORL1	6653	broad.mit.edu	37	chr11	121430371	121430371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggaagaacactggtaaGccagagtctcttcttttgtc	11	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121430371	T	T	121430371	1	4	24	0	1	0	0	0	0	0	0	0	15048	986	34	3		3	SORL1	11	121430371	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	36721	121430371	13576145	1504	40498											
GRAMD1B	57476	broad.mit.edu	37	chr11	123431746	123431746	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctctatagtagcactgcttGagctgagctctggatcacgg	11	11	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123431746	C	C	123431746	1	2	24	0	1	0	0	0	0	0	0	0	6814	1305	45	4		4	GRAMD1B	11	123431746	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2001375	123431746	11574770	1505	40499											
OR8D4	338662	broad.mit.edu	37	chr11	123777895	123777895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgttcttatgttttatGggtctctgatgtccatgtat	9	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123777895	T	T	123777895	3	4	24	1	0	0	0	0	1	0	0	0	11327	1348	47	2	759	2	OR8D4	11	123777895	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	346149	123777895	11228621	1506	40500											
OR10G9	219870	broad.mit.edu	37	chr11	123894254	123894254	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatccagcactatttgtgtGatgcaccgcccatcctgaaa	8	12	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123894254	A	A	123894254	3	1	24	1	0	0	0	0	1	0	0	0	10998	1290	45	4	537	4	OR10G9	11	123894254	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	116359	123894254	11112262	1507	40501											
VWA5A	4013	broad.mit.edu	37	chr11	124006697	124006697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcttcttcatatataaaGcccatctcctagaatagtat	4	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124006697	T	T	124006697	1	4	24	0	1	0	0	0	0	0	0	0	17369	986	34	3		3	VWA5A	11	124006697	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	112443	124006697	10999819	1508	40502											
PANX3	116337	broad.mit.edu	37	chr11	124487392	124487392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagctggagaagtgagttGtctcttccacctttttctga	10	8	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124487392	T	T	124487392	1	4	24	0	1	0	0	0	0	0	0	0	11516	1392	48	3		3	PANX3	11	124487392	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	480695	124487392	10519124	1509	40503											
ROBO3	64221	broad.mit.edu	37	chr11	124742273	124742273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggttccttgctctgtccCcaggtcctgcttttccccag	8	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124742273	A	A	124742273	1	1	24	0	1	0	0	0	0	0	0	0	13626	638	22	2		2	ROBO3	11	124742273	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	254881	124742273	10264243	1510	40504											
ROBO4	54538	broad.mit.edu	37	chr11	124766323	124766323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaattctaccggaggatgCggggctggacggcaggtcag	16	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124766323	A	A	124766323	1	1	24	0	1	0	0	0	0	0	0	0	13627	783	27	3		3	ROBO4	11	124766323	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	24050	124766323	10240193	1511	40505											
CCDC15	80071	broad.mit.edu	37	chr11	124857874	124857874	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatatgtcaggaccaggaTtttctacccagagaccaagg	9	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124857874	G	G	124857874	3	3	24	1	0	0	0	0	1	0	0	0	2810	1490	52	5	1778	5	CCDC15	11	124857874	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	91551	124857874	10148642	1512	40506											
RPUSD4	84881	broad.mit.edu	37	chr11	126073362	126073362	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttctcattttgatcctcaTttggcatctctaaacgcagg	7	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126073362	C	C	126073362	3	2	24	1	0	0	0	0	1	0	0	0	13780	1493	52	5	52	5	RPUSD4	11	126073362	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1215488	126073362	8933154	1513	40507											
ADAMTS15	170689	broad.mit.edu	37	chr11	130343343	130343343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcacaacagcgtcctcaGcctctccaaccaggtggagc	9	16	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130343343	T	T	130343343	3	4	24	1	0	0	0	0	1	0	0	0	260	971	34	3	2510	3	ADAMTS15	11	130343343	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4269981	130343343	4663173	1514	40508											
NTM	50863	broad.mit.edu	37	chr11	131781455	131781455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgttccttgtacccaCaggagtgcccgtgcgcagcg	13	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131781455	A	A	131781455	3	1	24	1	0	0	0	0	1	0	0	0	10794	478	17	3	168	3	NTM	11	131781455	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1438112	131781455	3225061	1515	40509											
NTM	50863	broad.mit.edu	37	chr11	132204969	132204969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcagcgaggtgagcaacGgcacgtcgaggagggcaggc	18	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132204969	T	T	132204969	3	4	24	1	0	0	0	0	1	0	0	0	10794	1116	39	1	1130	1	NTM	11	132204969	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	423514	132204969	2801547	1516	40510											
WNK1	65125	broad.mit.edu	37	chr12	863591	863591	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacttggcattctctgttgGactccgagtgggacggggag	15	9	2	0	rs72647376		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	863591	T	T	863591	1	4	24	0	1	0	0	0	0	0	0	0	17504	1189	41	3		3	WNK1	12	863591	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08		863591	132988304	1517	40511											
CACNA2D4	93589	broad.mit.edu	37	chr12	1949933	1949933	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctgtcctcttgtccacGgtcaccgccacagctgtgct	10	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1949933	T	T	1949933	2	4	24	1	0	0	0	0	0	0	0	1	2577	1103	39	1		1	CACNA2D4	12	1949933	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1086342	1949933	131901962	1518	40512											
CACNA1C	775	broad.mit.edu	37	chr12	2791141	2791141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcacgttccgatgtgtgagGatctggagctcaggagggat	17	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2791141	T	T	2791141	3	4	24	1	0	0	0	0	1	0	0	0	2566	1174	41	3	6240	3	CACNA1C	12	2791141	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	841208	2791141	131060754	1519	40513											
NRIP2	83714	broad.mit.edu	37	chr12	2936919	2936919	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctcctcttagccgttgctCcttctctgcccaccccatcc	4	22	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2936919	T	T	2936919	1	4	24	0	1	0	0	0	0	0	0	0	10748	870	30	4		4	NRIP2	12	2936919	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	145778	2936919	130914976	1520	40514											
FOXM1	2305	broad.mit.edu	37	chr12	2974399	2974399	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtctagggctggcaccTagacaaaacatggccatagg	12	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2974399	C	C	2974399	1	2	24	0	1	0	0	0	0	0	0	0	6078	1537	53	5		5	FOXM1	12	2974399	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	37480	2974399	130877496	1521	40515											
FOXM1	2305	broad.mit.edu	37	chr12	2974536	2974536	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactgattccaagtgctcGggcaattgtggagaccctgg	12	10	0	2	rs140831441		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2974536	T	T	2974536	2	4	24	1	0	0	0	0	0	0	0	1	6078	1103	39	1		1	FOXM1	12	2974536	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	137	2974536	130877359	1522	40516											
TEAD4	7004	broad.mit.edu	37	chr12	3126676	3126676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgcccggggccccggccGcccagcagtctcaggggtaa	14	18	1	0	rs139665156	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3126676	T	T	3126676	3	4	24	1	0	0	0	0	1	0	0	0	15863	1087	38	3	481	3	TEAD4	12	3126676	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	152140	3126676	130725219	1523	40517											
PARP11	57097	broad.mit.edu	37	chr12	3923203	3923203	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaattctgataattacCttttccaaagacagcaccat	5	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3923203	A	A	3923203	4	1	24	1	0	0	0	0	0	1	0	0	11550	695	24	2	324	2	PARP11	12	3923203	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	796527	3923203	129928692	1524	40518											
ANO2	57101	broad.mit.edu	37	chr12	5685094	5685094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagagggtgtggttgaCaaagccgtgcagagtcccat	15	7	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5685094	A	A	5685094	3	1	24	1	0	0	0	0	1	0	0	0	697	478	17	3	481	3	ANO2	12	5685094	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1761891	5685094	128166801	1525	40519											
ACRBP	84519	broad.mit.edu	37	chr12	6753873	6753873	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataaacaaagcagaccaagTcacacttatacacacagaaa	4	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6753873	A	A	6753873	1	1	24	0	1	0	0	0	0	0	0	0	170	1682	58	5		5	ACRBP	12	6753873	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1068779	6753873	127098022	1526	40520											
ACSM4	341392	broad.mit.edu	37	chr12	7477089	7477089	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcaaaaacttcttttcctCttcaggtaccgtattgggcc	8	11	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7477089	G	G	7477089	1	3	24	0	1	0	0	0	0	0	0	0	186	928	32	4		4	ACSM4	12	7477089	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	723216	7477089	126374806	1527	40521											
APOBEC1	339	broad.mit.edu	37	chr12	7805093	7805093	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtccctgagaccttgcCgattttgttgatccatgtgc	10	11	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7805093	T	T	7805093	3	4	24	1	0	0	0	0	1	0	0	0	789	652	23	4	339	4	APOBEC1	12	7805093	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	328004	7805093	126046802	1528	40522											
RIMKLB	57494	broad.mit.edu	37	chr12	8895381	8895381	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccaggcagctttccaggAgctgtgccttctgatggtta	12	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8895381	G	G	8895381	1	3	24	0	1	0	0	0	0	0	0	0	13477	319	11	5		5	RIMKLB	12	8895381	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1090288	8895381	124956514	1529	40523											
PZP	5858	broad.mit.edu	37	chr12	9355209	9355209	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaactgtgttcctcttcctGaaatcttgcgtaggcccctt	8	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9355209	A	A	9355209	2	1	24	1	0	0	0	0	0	0	0	1	12977	1281	45	4		4	PZP	12	9355209	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	459828	9355209	124496686	1530	40524											
OLR1	4973	broad.mit.edu	37	chr12	10313198	10313198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgactgttttacggaaacaCttactgaaggctagagatac	9	7	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10313198	A	A	10313198	1	1	24	0	1	0	0	0	0	0	0	0	10957	580	20	3		3	OLR1	12	10313198	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	957989	10313198	123538697	1531	40525											
GRIN2B	2904	broad.mit.edu	37	chr12	13715993	13715993	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatggagcaagcactggtcGtccccaaaagtggggatgaa	13	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13715993	C	C	13715993	3	2	24	1	0	0	0	0	1	0	0	0	6846	1136	40	4	279	4	GRIN2B	12	13715993	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3402795	13715993	120135902	1532	40526											
PIK3C2G	5288	broad.mit.edu	37	chr12	18747456	18747456	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtacttagctttttcctctCtgaggctgtgcaacaaacag	8	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18747456	A	A	18747456	3	1	24	1	0	0	0	0	1	0	0	0	12006	913	32	3	4027	3	PIK3C2G	12	18747456	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5031463	18747456	115104439	1533	40527											
PDE3A	5139	broad.mit.edu	37	chr12	20602565	20602565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttactggagccaattgtggCagattttagtctacaagtcg	10	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20602565	A	A	20602565	1	1	24	0	1	0	0	0	0	0	0	0	11731	725	25	3		3	PDE3A	12	20602565	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1855109	20602565	113249330	1534	40528											
SLCO1A2	6579	broad.mit.edu	37	chr12	21450297	21450297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccatcacactgttcgtggGggggaaagtgtgctagtaag	15	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21450297	T	T	21450297	1	4	24	0	1	0	0	0	0	0	0	0	14836	1247	43	2		2	SLCO1A2	12	21450297	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	847732	21450297	112401598	1535	40529											
RECQL	5965	broad.mit.edu	37	chr12	21652495	21652495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgctactaacctgaaaCggacgccattctttttcttt	5	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21652495	A	A	21652495	3	1	24	1	0	0	0	0	1	0	0	0	13309	536	19	3	1995	3	RECQL	12	21652495	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	202198	21652495	112199400	1536	40530											
ABCC9	10060	broad.mit.edu	37	chr12	21960373	21960373	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaaaatagctgtctctgTccaacgctaaaattctcccc	6	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21960373	C	C	21960373	2	2	24	1	0	0	0	0	0	0	0	1	59	1654	58	5		5	ABCC9	12	21960373	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	307878	21960373	111891522	1537	40531											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	24	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3437911	25398284	108453611	1538	40532											
PPFIBP1	8496	broad.mit.edu	37	chr12	27745100	27745100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcacacgggaaatagccCgcagagaggctcaggttgga	13	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27745100	A	A	27745100	1	1	24	0	1	0	0	0	0	0	0	0	12409	667	23	1		1	PPFIBP1	12	27745100	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2346816	27745100	106106795	1539	40533											
PPFIBP1	8496	broad.mit.edu	37	chr12	27840526	27840526	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactaagagccatttttcttGgagcctgcaggaaaagcctt	9	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27840526	C	C	27840526	1	2	24	0	1	0	0	0	0	0	0	0	12409	1363	47	4		4	PPFIBP1	12	27840526	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	95426	27840526	106011369	1540	40534											
TMTC1	83857	broad.mit.edu	37	chr12	29911649	29911649	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacatacctgttgtacgagAgaaaggccaatagaaacagc	9	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29911649	G	G	29911649	3	3	24	1	0	0	0	0	1	0	0	0	16383	304	11	5	2170	5	TMTC1	12	29911649	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2071123	29911649	103940246	1541	40535											
DENND5B	160518	broad.mit.edu	37	chr12	31632706	31632706	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaatttcagtgacctccctgGaggtggaaggggtacttcat	12	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31632706	C	C	31632706	3	2	24	1	0	0	0	0	1	0	0	0	4477	1174	41	4	3179	4	DENND5B	12	31632706	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1721057	31632706	102219189	1542	40536											
KIF21A	55605	broad.mit.edu	37	chr12	39726905	39726905	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacttgccgacgaagagccGtaacctgaaattgcagcaaa	9	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39726905	C	C	39726905	3	2	24	1	0	0	0	0	1	0	0	0	8358	1145	40	4	2612	4	KIF21A	12	39726905	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	8094199	39726905	94124990	1543	40537											
ABCD2	225	broad.mit.edu	37	chr12	39994472	39994472	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaagagagaacttttcCcacaaccattgggaccagtt	8	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39994472	T	T	39994472	3	4	24	1	0	0	0	0	1	0	0	0	61	623	22	4	695	4	ABCD2	12	39994472	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	267567	39994472	93857423	1544	40538											
GXYLT1	283464	broad.mit.edu	37	chr12	42499723	42499724	+	Missense_Mutation	DNP	CC	AT	AT													tagcaaagcgattataccatCctattcgaggttcctcatgt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	42499724	AT	AT	42499723	3	1	24	1	0	0	0	0	1	0	0	0	6968	855	30	3	577	3	GXYLT1	12	42499723	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	2505251	42499723	91352172	1545	40539											
ADAMTS20	80070	broad.mit.edu	37	chr12	43822102	43822102	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggatggaccacctgaTtttcattatcttcaagtttt	7	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43822102	C	C	43822102	3	2	24	1	0	0	0	0	1	0	0	0	266	1493	52	5	1900	5	ADAMTS20	12	43822102	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1322379	43822102	90029793	1546	40540											
ADAMTS20	80070	broad.mit.edu	37	chr12	43944830	43944830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccaggccccgcgctccGgggttcccaagtgcacctcg	11	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43944830	T	T	43944830	3	4	24	1	0	0	0	0	1	0	0	0	266	1116	39	1	5548	1	ADAMTS20	12	43944830	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	122728	43944830	89907065	1547	40541											
ANO6	196527	broad.mit.edu	37	chr12	45784253	45784253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaatgtatacggataaCcctctgtgccagtgctgtct	11	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45784253	A	A	45784253	3	1	24	1	0	0	0	0	1	0	0	0	701	507	18	3	1424	3	ANO6	12	45784253	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1839423	45784253	88067642	1548	40542											
SLC38A2	54407	broad.mit.edu	37	chr12	46760912	46760912	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcaagctttccaactaatCcaaatgccttatatcccaat	3	13	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46760912	T	T	46760912	3	4	24	1	0	0	0	0	1	0	0	0	14718	855	30	4	1136	4	SLC38A2	12	46760912	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	976659	46760912	87090983	1549	40543											
SLC38A4	55089	broad.mit.edu	37	chr12	47178312	47178312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgggatccattgaaaagTatatccccttacctccaatg	6	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47178312	C	C	47178312	1	2	24	0	1	0	0	0	0	0	0	0	14720	1653	57	5		5	SLC38A4	12	47178312	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	417400	47178312	86673583	1550	40544											
MLL2	8085	broad.mit.edu	37	chr12	49444804	49444804	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagggagataaggatggttCcccagggggagggaacaagg	18	6	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49444804	T	T	49444804	3	4	24	1	0	0	0	0	1	0	0	0	9714	864	30	4	14131	4	MLL2	12	49444804	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2266492	49444804	84407091	1551	40545											
PRPH	5630	broad.mit.edu	37	chr12	49690331	49690331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtgggcccggtatcagGggcggtttctgaggttgtgg	19	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49690331	T	T	49690331	1	4	24	0	1	0	0	0	0	0	0	0	12682	1247	43	2		2	PRPH	12	49690331	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	245527	49690331	84161564	1552	40546											
KCNH3	23416	broad.mit.edu	37	chr12	49937257	49937257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagtgccgcccgcggccCgcccagcgtctgtgacctgg	14	19	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49937257	A	A	49937257	3	1	24	1	0	0	0	0	1	0	0	0	8103	652	23	1	797	1	KCNH3	12	49937257	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	246926	49937257	83914638	1553	40547											
KCNH3	23416	broad.mit.edu	37	chr12	49950228	49950228	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgtgggccagtctggcccGgaatgtagcagcagcccctc	14	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49950228	A	A	49950228	2	1	24	1	0	0	0	0	0	0	0	1	8103	1103	39	4		4	KCNH3	12	49950228	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	12971	49950228	83901667	1554	40548											
FAM186B	84070	broad.mit.edu	37	chr12	49993982	49993982	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcccggccgaattcctcctCccagggctcctcttggctct	8	19	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49993982	G	G	49993982	3	3	24	1	0	0	0	0	1	0	0	0	5558	864	30	4	1256	4	FAM186B	12	49993982	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	43754	49993982	83857913	1555	40549											
KRT85	3891	broad.mit.edu	37	chr12	52758190	52758190	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtctggagctgagaaactgGaccttgaataccatcccaac	10	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52758190	T	T	52758190	1	4	24	0	1	0	0	0	0	0	0	0	8570	1189	41	3		3	KRT85	12	52758190	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2764208	52758190	81093705	1556	40550											
KRT85	3891	broad.mit.edu	37	chr12	52760632	52760632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagtgatggaaactgaccCttccacctgtatgggtctgc	10	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52760632	A	A	52760632	1	1	24	0	1	0	0	0	0	0	0	0	8570	696	24	2		2	KRT85	12	52760632	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2442	52760632	81091263	1557	40551											
KRT79	338785	broad.mit.edu	37	chr12	53227808	53227808	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagagcccgccccaacaaGgcccctccggccacactgac	8	22	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53227808	T	T	53227808	2	4	24	1	0	0	0	0	0	0	0	1	8563	987	35	2		2	KRT79	12	53227808	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	467176	53227808	80624087	1558	40552											
TENC1	23371	broad.mit.edu	37	chr12	53457101	53457101	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgggggctcatgtttctGagtgtgaccttcctcaccct	10	14	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53457101	A	A	53457101	1	1	24	0	1	0	0	0	0	0	0	0	15880	1305	45	4		4	TENC1	12	53457101	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	229293	53457101	80394794	1559	40553											
OR6C74	254783	broad.mit.edu	37	chr12	55641405	55641405	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggggcaactgaattttttCttctggctgccatgtcctat	10	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55641405	A	A	55641405	3	1	24	1	0	0	0	0	1	0	0	0	11292	913	32	3	336	3	OR6C74	12	55641405	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2184304	55641405	78210490	1560	40554											
PA2G4	5036	broad.mit.edu	37	chr12	56501119	56501119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttcttatccccaccccCaatcaccacgtaagttgaga	5	15	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56501119	A	A	56501119	1	1	24	0	1	0	0	0	0	0	0	0	11455	609	21	2		2	PA2G4	12	56501119	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	859714	56501119	77350776	1561	40555											
LRP1	4035	broad.mit.edu	37	chr12	57588382	57588382	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaacgccccagatgcccTctgaattacttcgcctgccc	8	16	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57588382	C	C	57588382	2	2	24	1	0	0	0	0	0	0	0	1	9038	1538	54	5		5	LRP1	12	57588382	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	1087263	57588382	76263513	1562	40556											
PIP4K2C	79837	broad.mit.edu	37	chr12	57994097	57994097	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccaagatgtccctttacAtattcttaggttaaagaatt	5	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57994097	G	G	57994097	1	3	24	0	1	0	0	0	0	0	0	0	12033	232	8	5		5	PIP4K2C	12	57994097	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	405715	57994097	75857798	1563	40557											
AGAP2	116986	broad.mit.edu	37	chr12	58128445	58128445	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgatgacttcccactcctGgcatcgcccagcacaccctg	8	18	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58128445	A	A	58128445	2	1	24	1	0	0	0	0	0	0	0	1	368	1335	47	4		4	AGAP2	12	58128445	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	134348	58128445	75723450	1564	40558											
FAM19A2	338811	broad.mit.edu	37	chr12	62273611	62273611	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagcttggcaacatgcagGagctggtggaggacttcaag	15	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62273611	A	A	62273611	1	1	24	0	1	0	0	0	0	0	0	0	5579	1189	41	4		4	FAM19A2	12	62273611	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4145166	62273611	71578284	1565	40559											
USP15	9958	broad.mit.edu	37	chr12	62708623	62708623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagtagaagtatatctcaCagaattgaagctatgtgaaa	8	5	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62708623	T	T	62708623	3	4	24	1	0	0	0	0	1	0	0	0	17172	478	17	4	415	4	USP15	12	62708623	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	435012	62708623	71143272	1566	40560											
GRIP1	23426	broad.mit.edu	37	chr12	66788145	66788145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcatctgtaataaatgCcaaggaatcataattgattt	6	6	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66788145	A	A	66788145	1	1	24	0	1	0	0	0	0	0	0	0	6853	754	26	3		3	GRIP1	12	66788145	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4079522	66788145	67063750	1567	40561											
RAP1B	5908	broad.mit.edu	37	chr12	69036310	69036310	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattttataaattctcgattAgttggtgaggccaataagga	9	4	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69036310	T	T	69036310	1	4	24	0	1	0	0	0	0	0	0	0	13144	435	15	5		5	RAP1B	12	69036310	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2248165	69036310	64815585	1568	40562											
CPM	1368	broad.mit.edu	37	chr12	69264028	69264028	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaaatgggtaactggccaCgagggcaccaccatggaggt	13	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69264028	G	G	69264028	3	3	24	1	0	0	0	0	1	0	0	0	3840	536	19	4	768	4	CPM	12	69264028	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	227718	69264028	64587867	1569	40563											
TSPAN8	7103	broad.mit.edu	37	chr12	71537909	71537909	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactacattggggaaagggTgacttgtttttgcatactta	10	5	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71537909	G	G	71537909	1	3	24	0	1	0	0	0	0	0	0	0	16778	1711	59	5		5	TSPAN8	12	71537909	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2273881	71537909	62313986	1570	40564											
CAPS2	84698	broad.mit.edu	37	chr12	75686950	75686950	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaagttataaataccttaTagtagaatgtcattttaaga	6	3	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75686950	A	A	75686950	1	1	24	0	1	0	0	0	0	0	0	0	2664	1421	49	5		5	CAPS2	12	75686950	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	4149041	75686950	58164945	1571	40565											
SLC6A15	55117	broad.mit.edu	37	chr12	85279675	85279675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattacagcatacaccaaCaaaaggaaacttactacaca	4	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85279675	A	A	85279675	1	1	24	0	1	0	0	0	0	0	0	0	14792	493	17	3		3	SLC6A15	12	85279675	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	9592725	85279675	48572220	1572	40566											
SOCS2	8835	broad.mit.edu	37	chr12	93968706	93968706	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgtgtcaaatccaagctTaaacaatttgacagtgtggt	8	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93968706	G	G	93968706	2	3	24	1	0	0	0	0	0	0	0	1	15028	1741	61	5		5	SOCS2	12	93968706	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	8689031	93968706	39883189	1573	40567											
FAM71C	196472	broad.mit.edu	37	chr12	100042480	100042480	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttacatcctgagaccaccAgtggaggcttacagtgatac	10	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100042480	G	G	100042480	2	3	24	1	0	0	0	0	0	0	0	1	5660	175	7	5		5	FAM71C	12	100042480	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	6073774	100042480	33809415	1574	40568											
ACTR6	64431	broad.mit.edu	37	chr12	100606330	100606330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttaaaaaccatcaatgGttggttgctgcggctcctgt	9	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100606330	T	T	100606330	1	4	24	0	1	0	0	0	0	0	0	0	216	1276	44	3		3	ACTR6	12	100606330	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	563850	100606330	33245565	1575	40569											
SCYL2	55681	broad.mit.edu	37	chr12	100676872	100676872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgacacattgccagtggtGgcaatgggctagcttggaag	15	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100676872	T	T	100676872	3	4	24	1	0	0	0	0	1	0	0	0	14061	1348	47	2	126	2	SCYL2	12	100676872	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	70542	100676872	33175023	1576	40570											
NR1H4	9971	broad.mit.edu	37	chr12	100897338	100897338	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggactgaggaaatctgggGactttggttggagatgacag	16	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100897338	T	T	100897338	1	4	24	0	1	0	0	0	0	0	0	0	10714	1189	41	3		3	NR1H4	12	100897338	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	220466	100897338	32954557	1577	40571											
SPIC	121599	broad.mit.edu	37	chr12	101880362	101880362	+	Frame_Shift_Del	DEL	G	-	-													ggaaattaccaaaatccggaGgaagctgacttaccagttca							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101880362	-	-	101880362	7	5	24	1	0	1	0	1	0	0	0	0	15169	1000	35	0	572	0	SPIC	12	101880362	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	983024	101880362	31971533	1578	40572											
MYBPC1	4604	broad.mit.edu	37	chr12	102053701	102053701	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcctttccttccatttcCttcctttgtctttcccttat	2	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102053701	T	T	102053701	1	4	24	0	1	0	0	0	0	0	0	0	10105	696	24	4		4	MYBPC1	12	102053701	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	173339	102053701	31798194	1579	40573											
STAB2	55576	broad.mit.edu	37	chr12	103984672	103984672	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttttttttaatatttacaCaggcaagaagatgtgatagg	8	4	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103984672	T	T	103984672	1	4	24	0	1	0	0	0	0	0	0	0	15356	493	17	4		4	STAB2	12	103984672	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1930971	103984672	29867223	1580	40574											
STAB2	55576	broad.mit.edu	37	chr12	104082119	104082119	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtgctgagcagtgtttctCaacgctggctgcactgtgga	13	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104082119	T	T	104082119	1	4	24	0	1	0	0	0	0	0	0	0	15356	841	29	4		4	STAB2	12	104082119	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	97447	104082119	29769776	1581	40575											
PWP1	11137	broad.mit.edu	37	chr12	108079665	108079665	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctagcgtgacacgcccttGacttgaggaccatgaaccgc	10	13	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108079665	T	T	108079665	1	4	24	0	1	0	0	0	0	0	0	0	12951	1305	45	3		3	PWP1	12	108079665	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	3997546	108079665	25772230	1582	40576											
DAO	1610	broad.mit.edu	37	chr12	109292333	109292333	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgttgatggtgatgacaGtggcaattgaggtagtgatg	17	2	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109292333	A	A	109292333	1	1	24	0	1	0	0	0	0	0	0	0	4264	1044	36	4		4	DAO	12	109292333	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1212668	109292333	24559562	1583	40577											
DAO	1610	broad.mit.edu	37	chr12	109292563	109292563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctgcagactggagccCacactgaaggtaaggtaggg	16	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109292563	A	A	109292563	2	1	24	1	0	0	0	0	0	0	0	1	4264	581	21	2		2	DAO	12	109292563	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	230	109292563	24559332	1584	40578											
SVOP	55530	broad.mit.edu	37	chr12	109306390	109306390	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatctcctggccccactccCggtggctggactcctgcagt	10	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109306390	T	T	109306390	3	4	24	1	0	0	0	0	1	0	0	0	15541	652	23	4	82	4	SVOP	12	109306390	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	13827	109306390	24545505	1585	40579											
IFT81	28981	broad.mit.edu	37	chr12	110628820	110628820	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagagtgaagttgatgaaatGaaaggacgaacattggatga	13	2	0	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110628820	C	C	110628820	3	2	24	1	0	0	0	0	1	0	0	0	7635	1290	45	4	1592	4	IFT81	12	110628820	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1322430	110628820	23223075	1586	40580											
RAD9B	144715	broad.mit.edu	37	chr12	110950713	110950713	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctgttgtcagtttttttCacctgaatacagtatgatca	6	8	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110950713	G	G	110950713	1	3	24	0	1	0	0	0	0	0	0	0	13104	841	29	4		4	RAD9B	12	110950713	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	321893	110950713	22901182	1587	40581											
CCDC63	160762	broad.mit.edu	37	chr12	111290818	111290818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctactatggggtcaggcaCtgtgccatccactttacacg	9	13	1	0	rs147506764	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111290818	A	A	111290818	1	1	24	0	1	0	0	0	0	0	0	0	2862	580	20	3		3	CCDC63	12	111290818	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	340105	111290818	22561077	1588	40582											
MYL2	4633	broad.mit.edu	37	chr12	111357036	111357036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattaaaagagtgagaggctGggagtcaaaaaactaggtca	13	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111357036	T	T	111357036	1	4	24	0	1	0	0	0	0	0	0	0	10141	1363	47	2		2	MYL2	12	111357036	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	66218	111357036	22494859	1589	40583											
FAM109A	144717	broad.mit.edu	37	chr12	111801145	111801145	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtggtaggccgcgtgccgCccacccttcttgtacaggaa	13	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111801145	T	T	111801145	2	4	24	1	0	0	0	0	0	0	0	1	5440	726	26	4		4	FAM109A	12	111801145	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	444109	111801145	22050750	1590	40584											
C12orf51	283450	broad.mit.edu	37	chr12	112650355	112650355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaagatatggtgagaggCgctgcccgcagtatgtgaag	14	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112650355	A	A	112650355	3	1	24	1	0	0	0	0	1	0	0	0	1709	768	27	3	5803	3	C12orf51	12	112650355	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	849210	112650355	21201540	1591	40585											
C12orf51	283450	broad.mit.edu	37	chr12	112681597	112681597	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagaacagactggcaagacGagaaacacactcagggagct	11	10	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112681597	T	T	112681597	1	4	24	0	1	0	0	0	0	0	0	0	1709	1073	37	3		3	C12orf51	12	112681597	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	31242	112681597	21170298	1592	40586											
RPH3A	22895	broad.mit.edu	37	chr12	113266087	113266087	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgatggggtgatgtcctctCtggattgatgttttccagga	13	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113266087	A	A	113266087	1	1	24	0	1	0	0	0	0	0	0	0	13662	928	32	3		3	RPH3A	12	113266087	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	584490	113266087	20585808	1593	40587											
RASAL1	8437	broad.mit.edu	37	chr12	113537595	113537595	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctggactcaaggcacaCaggactaggcacgtctctgg	12	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113537595	G	G	113537595	1	3	24	0	1	0	0	0	0	0	0	0	13171	493	17	4		4	RASAL1	12	113537595	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	271508	113537595	20314300	1594	40588											
TPCN1	53373	broad.mit.edu	37	chr12	113703898	113703898	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcctcgcctgcctggggCcttcctttcctcccctgccc	7	22	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113703898	T	T	113703898	1	4	24	0	1	0	0	0	0	0	0	0	16519	754	26	4		4	TPCN1	12	113703898	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	166303	113703898	20147997	1595	40589											
TPCN1	53373	broad.mit.edu	37	chr12	113703919	113703919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctttcctcccctgcccGcggctcctctttggcgttgg	9	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113703919	T	T	113703919	1	4	24	0	1	0	0	0	0	0	0	0	16519	1102	38	3		3	TPCN1	12	113703919	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	21	113703919	20147976	1596	40590											
TPCN1	53373	broad.mit.edu	37	chr12	113731174	113731174	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggagcctggccgaccaCgctgcgaatcctcccccaag	12	16	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113731174	T	T	113731174	1	4	24	0	1	0	0	0	0	0	0	0	16519	551	19	4		4	TPCN1	12	113731174	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	27255	113731174	20120721	1597	40591											
TBX3	6926	broad.mit.edu	37	chr12	115117764	115117764	+	Frame_Shift_Del	DEL	G	-	-													gccacgtagcgtgatcacttGggaaggccaaagtcttaaaa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115117764	-	-	115117764	7	5	24	1	0	1	0	1	0	0	0	0	15781	1348	47	0	1584	0	TBX3	12	115117764	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	1386590	115117764	18734131	1598	40592											
GCN1L1	10985	broad.mit.edu	37	chr12	120576189	120576189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgacttgcttcagaccatCcaaggcaaactctgacacct	6	14	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120576189	A	A	120576189	3	1	24	1	0	0	0	0	1	0	0	0	6361	855	30	3	1876	3	GCN1L1	12	120576189	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5458425	120576189	13275706	1599	40593											
GCN1L1	10985	broad.mit.edu	37	chr12	120586150	120586150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagaagctccactgacCctgtggatagcagacacaag	9	14	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120586150	A	A	120586150	3	1	24	1	0	0	0	0	1	0	0	0	6361	637	22	2	3556	2	GCN1L1	12	120586150	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	9961	120586150	13265745	1600	40594											
TMEM120B	144404	broad.mit.edu	37	chr12	122199630	122199630	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcgggagagcattctcatCagcaacggctcaaggtacct	10	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122199630	T	T	122199630	2	4	24	1	0	0	0	0	0	0	0	1	16157	816	29	4		4	TMEM120B	12	122199630	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1613480	122199630	11652265	1601	40595											
TMEM120B	144404	broad.mit.edu	37	chr12	122199641	122199641	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattctcatcagcaacggctCaaggtacctgggcacctggc	10	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122199641	G	G	122199641	4	3	24	1	0	0	0	0	0	1	0	0	16157	838	29	4	570	4	TMEM120B	12	122199641	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	11	122199641	11652254	1602	40596											
CCDC62	84660	broad.mit.edu	37	chr12	123286247	123286247	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactccaagtgctgccacccGagtaacttcataattgaagc	8	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123286247	T	T	123286247	2	4	24	1	0	0	0	0	0	0	0	1	2861	1045	37	3		3	CCDC62	12	123286247	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1086606	123286247	10565648	1603	40597											
TCTN2	79867	broad.mit.edu	37	chr12	124155736	124155736	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtgtctgagtccttcctGggttctaatgagggcgcggt	14	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124155736	C	C	124155736	1	2	24	0	1	0	0	0	0	0	0	0	15845	1363	47	4		4	TCTN2	12	124155736	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	869489	124155736	9696159	1604	40598											
DNAH10	196385	broad.mit.edu	37	chr12	124416667	124416667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttgtgggtaagtggcacGtcaccgcctcctctctgccg	12	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124416667	A	A	124416667	1	1	24	0	1	0	0	0	0	0	0	0	4638	1160	40	4		4	DNAH10	12	124416667	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	260931	124416667	9435228	1605	40599											
DHX37	57647	broad.mit.edu	37	chr12	125449018	125449018	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggagacccaggtgacaCggaaggaggatacgccagtg	16	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125449018	T	T	125449018	3	4	24	1	0	0	0	0	1	0	0	0	4550	536	19	4	1558	4	DHX37	12	125449018	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1032351	125449018	8402877	1606	40600											
TMEM132B	114795	broad.mit.edu	37	chr12	126137136	126137136	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagacaaaagggccatcgtCtccacagctgctgccctgga	11	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126137136	G	G	126137136	2	3	24	1	0	0	0	0	0	0	0	1	16169	900	32	4		4	TMEM132B	12	126137136	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	688118	126137136	7714759	1607	40601											
TMEM132B	114795	broad.mit.edu	37	chr12	126138765	126138765	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctggccattctggtcttcTtgatcaactgcgtggcgttt	11	10	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126138765	C	C	126138765	2	2	24	1	0	0	0	0	0	0	0	1	16169	1606	56	5		5	TMEM132B	12	126138765	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	1629	126138765	7713130	1608	40602											
RIMBP2	23504	broad.mit.edu	37	chr12	130912696	130912696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctactctggggacggagtGcagggtcccccttccccagc	13	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130912696	T	T	130912696	1	4	24	0	1	0	0	0	0	0	0	0	13472	1334	46	3		3	RIMBP2	12	130912696	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4773931	130912696	2939199	1609	40603											
SFRS8	6433	broad.mit.edu	37	chr12	132211391	132211391	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttttcgacagataaccAagataacttggctgcttcta	7	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132211391	G	G	132211391	1	3	24	0	1	0	0	0	0	0	0	0	14296	145	5	5		5	SFRS8	12	132211391	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1298695	132211391	1640504	1610	40604											
EP400	57634	broad.mit.edu	37	chr12	132466997	132466997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaaggtgcaggtgcagGcctctcagctttcctccctg	12	13	1	0	rs147503869		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132466997	T	T	132466997	3	4	24	1	0	0	0	0	1	0	0	0	5191	1203	42	3	1914	3	EP400	12	132466997	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	255606	132466997	1384898	1611	40605											
EP400	57634	broad.mit.edu	37	chr12	132476984	132476984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcaacatggtcgtatctGctttttgaggtttggaaact	12	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132476984	T	T	132476984	1	4	24	0	1	0	0	0	0	0	0	0	5191	1334	46	3		3	EP400	12	132476984	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	9987	132476984	1374911	1612	40606											
POLE	5426	broad.mit.edu	37	chr12	133201441	133201449	+	Intron	DEL	AGGAGGCCA	-	-													agaccccagtccactcagagAggaggccaaggaggccaggc					rs5745082		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133201449	-	-	133201441	6	5	24	0	1	1	0	1	0	0	0	0	12291	319	11	0		0	POLE	12	133201441	Intron	DEL	AGGAGGCCA	TCGA-05-4427-01A-21D-1855-08	724457	133201441	650454	1613	40607											
POLE	5426	broad.mit.edu	37	chr12	133218912	133218912	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtggcgctggaggtggCgggcaaagaagaggtcggag	22	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133218912	T	T	133218912	3	4	24	1	0	0	0	0	1	0	0	0	12291	768	27	4	1884	4	POLE	12	133218912	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	17471	133218912	632983	1614	40608											
ANKLE2	23141	broad.mit.edu	37	chr12	133331553	133331553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggtagaaagaagacagCcttcctccttgctccagtaa	10	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133331553	A	A	133331553	3	1	24	1	0	0	0	0	1	0	0	0	633	738	26	3	2516	3	ANKLE2	12	133331553	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	112641	133331553	520342	1615	40609											
ZNF10	7556	broad.mit.edu	37	chr12	133732389	133732389	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtactgagagagtatttccAtaaacgtgactcacatacta	7	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133732389	T	T	133732389	3	4	24	1	0	0	0	0	1	0	0	0	17838	217	8	5	571	5	ZNF10	12	133732389	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	400836	133732389	119506	1616	40610											
ZNF268	10795	broad.mit.edu	37	chr12	133768687	133768687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttgcctcgtgtattacCatgcactttttttttttttt	4	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133768687	A	A	133768687	1	1	24	0	1	0	0	0	0	0	0	0	17933	609	21	2		2	ZNF268	12	133768687	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	36298	133768687	83208	1617	40611											
TUBA3C	7278	broad.mit.edu	37	chr13	19755785	19755785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgacctcctttctgcaccCtggcccgcaacagcatccct	6	19	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19755785	A	A	19755785	1	1	24	0	1	0	0	0	0	0	0	0	16872	696	24	2		2	TUBA3C	13	19755785	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08		19755785	95414093	1618	40612											
TPTE2	93492	broad.mit.edu	37	chr13	20137991	20137991	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcaatttatggaactcaCtgattctatccttggtagcc	6	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20137991	A	A	20137991	1	1	24	0	1	0	0	0	0	0	0	0	16555	580	20	3		3	TPTE2	13	20137991	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	382206	20137991	95031887	1619	40613											
PSPC1	55269	broad.mit.edu	37	chr13	20346659	20346659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtccagctctgcttttgCaatttcagccagggttctgg	11	12	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20346659	A	A	20346659	3	1	24	1	0	0	0	0	1	0	0	0	12822	710	25	3	1206	3	PSPC1	13	20346659	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	208668	20346659	94823219	1620	40614											
SACS	26278	broad.mit.edu	37	chr13	23915308	23915308	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actagccaagaacttcctcaGggcatctttgtgtgttggaa	10	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23915308	A	A	23915308	2	1	24	1	0	0	0	0	0	0	0	1	13915	991	35	4		4	SACS	13	23915308	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	3568649	23915308	91254570	1621	40615											
ATP12A	479	broad.mit.edu	37	chr13	25268600	25268600	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaagctgtgattggagatGcctcagaaactgctctttta	10	7	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25268600	A	A	25268600	3	1	24	1	0	0	0	0	1	0	0	0	1126	1319	46	4	1456	4	ATP12A	13	25268600	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1353292	25268600	89901278	1622	40616											
RNF17	56163	broad.mit.edu	37	chr13	25338208	25338208	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccccagccccatcaggagcGagcttgggggcgggctttaa	15	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25338208	A	A	25338208	1	1	24	0	1	0	0	0	0	0	0	0	13572	1073	37	4		4	RNF17	13	25338208	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	69608	25338208	89831670	1623	40617											
PABPC3	5042	broad.mit.edu	37	chr13	25672221	25672221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttaacagtgctaccggtgttCcaactgtttaaaattgatca	7	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25672221	A	A	25672221	3	1	24	1	0	0	0	0	1	0	0	0	11459	855	30	3	1887	3	PABPC3	13	25672221	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	334013	25672221	89497657	1624	40618											
FLT3	2322	broad.mit.edu	37	chr13	28608431	28608431	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataatgaatttttacctttgCttttacctttttgtacttgt	4	6	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28608431	G	G	28608431	1	3	24	0	1	0	0	0	0	0	0	0	6000	812	28	4		4	FLT3	13	28608431	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2936210	28608431	86561447	1625	40619											
FLT1	2321	broad.mit.edu	37	chr13	29001803	29001803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattttgctatctttgaTgttgttacgctgatttttga	8	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29001803	A	A	29001803	1	1	24	0	1	0	0	0	0	0	0	0	5999	1479	51	5		5	FLT1	13	29001803	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	393372	29001803	86168075	1626	40620											
USPL1	10208	broad.mit.edu	37	chr13	31231663	31231663	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgttctgaaaggcacaaGaaatttgaagttcctgcttc	8	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31231663	A	A	31231663	2	1	24	1	0	0	0	0	0	0	0	1	17219	933	33	4		4	USPL1	13	31231663	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2229860	31231663	83938215	1627	40621											
C13orf33	84935	broad.mit.edu	37	chr13	31495871	31495871	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaagttctgaatttgtcAagtacaagtccagaaaagaa	9	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31495871	T	T	31495871	2	4	24	1	0	0	0	0	0	0	0	1	1740	117	5	5		5	C13orf33	13	31495871	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	264208	31495871	83674007	1628	40622											
C13orf26	122046	broad.mit.edu	37	chr13	31543049	31543049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctgcacagctacctgaGgaaccaagagcacacaaaga	10	11	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31543049	T	T	31543049	3	4	24	1	0	0	0	0	1	0	0	0	1735	1000	35	2	696	2	C13orf26	13	31543049	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	47178	31543049	83626829	1629	40623											
BRCA2	675	broad.mit.edu	37	chr13	32914849	32914849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccagagcactgtgtaaaCtcagaaatggaaaaaacctg	8	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32914849	T	T	32914849	2	4	24	1	0	0	0	0	0	0	0	1	1508	564	20	4		4	BRCA2	13	32914849	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1371800	32914849	82255029	1630	40624											
BRCA2	675	broad.mit.edu	37	chr13	32944679	32944679	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgatgtaattattcaaagAgcataccctatacaggtatg	8	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32944679	T	T	32944679	3	4	24	1	0	0	0	0	1	0	0	0	1508	301	11	5	8542	5	BRCA2	13	32944679	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	29830	32944679	82225199	1631	40625											
FREM2	341640	broad.mit.edu	37	chr13	39425876	39425876	+	Frame_Shift_Del	DEL	C	-	-													gtgtcactgaacccaaagaaCctggagagtcggtggttata							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39425876	-	-	39425876	7	5	24	1	0	1	0	1	0	0	0	0	6105	507	18	0	6838	0	FREM2	13	39425876	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	6481197	39425876	75744002	1632	40626											
STOML3	161003	broad.mit.edu	37	chr13	39540831	39540831	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctctagagctttttcctGccaatgctcttccatctatg	6	13	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39540831	T	T	39540831	1	4	24	0	1	0	0	0	0	0	0	0	15433	1334	46	3		3	STOML3	13	39540831	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	114955	39540831	75629047	1633	40627											
C13orf23	80209	broad.mit.edu	37	chr13	39587831	39587831	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtagggatggctgatggggCatagcacttgttaggggctg	19	5	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39587831	G	G	39587831	3	3	24	1	0	0	0	0	1	0	0	0	1734	710	25	4	1288	4	C13orf23	13	39587831	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	47000	39587831	75582047	1634	40628											
C13orf23	80209	broad.mit.edu	37	chr13	39587866	39587866	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggctgaagcagaagagtcaGagttctgaagagtaagagaa	15	4	2	7			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39587866	C	C	39587866	3	2	24	1	0	0	0	0	1	0	0	0	1734	942	33	4	1323	4	C13orf23	13	39587866	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	35	39587866	75582012	1635	40629											
FOXO1	2308	broad.mit.edu	37	chr13	41134699	41134699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgagggcgaaatgtactcCagttatcaaagtcatcattg	9	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41134699	A	A	41134699	3	1	24	1	0	0	0	0	1	0	0	0	6083	595	21	2	1042	2	FOXO1	13	41134699	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1546833	41134699	74035179	1636	40630											
DGKH	160851	broad.mit.edu	37	chr13	42769083	42769083	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccattcccaaactgattctGtccctggtccagctgtggca	9	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42769083	C	C	42769083	3	2	24	1	0	0	0	0	1	0	0	0	4510	1377	48	4	2164	4	DGKH	13	42769083	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1634384	42769083	72400795	1637	40631											
ENOX1	55068	broad.mit.edu	37	chr13	43918814	43918814	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaatagaactggtttgcaGagcgccgattcacttcccct	10	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43918814	T	T	43918814	3	4	24	1	0	0	0	0	1	0	0	0	5168	942	33	3	1071	3	ENOX1	13	43918814	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1149731	43918814	71251064	1638	40632											
CPB2	1361	broad.mit.edu	37	chr13	46658366	46658366	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcctacctgcatggaattCcgctcacatttaaatgggct	9	11	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46658366	T	T	46658366	3	4	24	1	0	0	0	0	1	0	0	0	3829	855	30	4	1044	4	CPB2	13	46658366	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2739552	46658366	68511512	1639	40633											
LCP1	3936	broad.mit.edu	37	chr13	46730497	46730497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaacaaagttggcctaCgataaataacgattaattgt	6	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46730497	A	A	46730497	1	1	24	0	1	0	0	0	0	0	0	0	8763	551	19	3		3	LCP1	13	46730497	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	72131	46730497	68439381	1640	40634											
C13orf18	80183	broad.mit.edu	37	chr13	47011991	47011991	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcatttcttcccacttctGggattttttgctcagctcct	6	12	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47011991	A	A	47011991	1	1	24	0	1	0	0	0	0	0	0	0	1733	1363	47	4		4	C13orf18	13	47011991	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	281494	47011991	68157887	1641	40635											
ATP7B	540	broad.mit.edu	37	chr13	52542619	52542620	+	Missense_Mutation	DNP	CA	AT	AT													tcggagcctgcgtagtcctcCatgactgctgcctcaaaacc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	52542620	AT	AT	52542619	3	1	24	1	0	0	0	0	1	0	0	0	1195	594	21	2	2801	2	ATP7B	13	52542619	Missense_Mutation	DNP	CA	TCGA-05-4427-01A-21D-1855-08	5530628	52542619	62627259	1642	40636											
DACH1	1602	broad.mit.edu	37	chr13	72133870	72133870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccatctgagatctatttGgaatgagggcatgttgatta	11	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72133870	T	T	72133870	1	4	24	0	1	0	0	0	0	0	0	0	4253	1363	47	2		2	DACH1	13	72133870	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	19591251	72133870	43036008	1643	40637											
TBC1D4	9882	broad.mit.edu	37	chr13	75884279	75884280	+	Missense_Mutation	DNP	CC	AA	AA													tggcagcagctcgttcctgtCcaatccatctgcagagaaga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	75884280	AA	AA	75884279	3	1	24	1	0	0	0	0	1	0	0	0	15744	855	30	3	1536	3	TBC1D4	13	75884279	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	3750409	75884279	39285599	1644	40638											
SCEL	8796	broad.mit.edu	37	chr13	78138069	78138069	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccatataaatggaatgcaTaacatattaaatacattttc	3	6	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78138069	A	A	78138069	1	1	24	0	1	0	0	0	0	0	0	0	14000	1421	49	5		5	SCEL	13	78138069	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2253790	78138069	37031809	1645	40639											
SLITRK6	84189	broad.mit.edu	37	chr13	86369000	86369001	+	Nonsense_Mutation	DNP	GG	TT	TT													tttttgtcgagatgcccgggGgaagtgcagaggatgtcatc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	86369001	TT	TT	86369000	4	4	24	1	0	0	0	0	0	1	0	0	14861	1219	43	2	885	2	SLITRK6	13	86369000	Nonsense_Mutation	DNP	GG	TCGA-05-4427-01A-21D-1855-08	8230931	86369000	28800878	1646	40640											
GPC5	2262	broad.mit.edu	37	chr13	92560079	92560079	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttccaagagaaaaatacAttggtgtattctctaaagga	8	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92560079	T	T	92560079	1	4	24	0	1	0	0	0	0	0	0	0	6666	232	8	5		5	GPC5	13	92560079	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	6191079	92560079	22609799	1647	40641											
GPC6	10082	broad.mit.edu	37	chr13	94482694	94482694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcaagccatttggagacGtgccccggaaactgaagatt	11	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94482694	T	T	94482694	3	4	24	1	0	0	0	0	1	0	0	0	6667	1145	40	3	617	3	GPC6	13	94482694	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1922615	94482694	20687184	1648	40642											
GPC6	10082	broad.mit.edu	37	chr13	94958127	94958127	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attagagtttattggaggtaAaagtttcataagaaatgtgg	11	1	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94958127	C	C	94958127	1	2	24	0	1	0	0	0	0	0	0	0	6667	29	1	5		5	GPC6	13	94958127	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	475433	94958127	20211751	1649	40643											
DZIP1	22873	broad.mit.edu	37	chr13	96239874	96239874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttcactgtgttcttccCgaagctgcccttgttttgtg	8	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96239874	A	A	96239874	3	1	24	1	0	0	0	0	1	0	0	0	4903	652	23	1	482	1	DZIP1	13	96239874	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1281747	96239874	18930004	1650	40644											
HS6ST3	266722	broad.mit.edu	37	chr13	96743087	96743087	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgccgccgccgccgccgcCgcttcgcctgccggcctgag	13	22	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96743087	G	G	96743087	1	3	24	0	1	0	0	0	0	0	0	0	7439	667	23	4		4	HS6ST3	13	96743087	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	503213	96743087	18426791	1651	40645											
DOCK9	23348	broad.mit.edu	37	chr13	99537282	99537282	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaaggttcgccgagacCgggatgtgctgctcgcttgt	16	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99537282	A	A	99537282	2	1	24	1	0	0	0	0	0	0	0	1	4734	639	23	1		1	DOCK9	13	99537282	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2794195	99537282	15632596	1652	40646											
TMTC4	84899	broad.mit.edu	37	chr13	101308535	101308535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcccctcagagtgacaCactcacatagatggattctt	7	12	3	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101308535	A	A	101308535	1	1	24	0	1	0	0	0	0	0	0	0	16386	493	17	3		3	TMTC4	13	101308535	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1771253	101308535	13861343	1653	40647											
NALCN	259232	broad.mit.edu	37	chr13	101710363	101710363	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcttgccgacttcctcCtcgatccgacagcgtggggc	11	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101710363	T	T	101710363	3	4	24	1	0	0	0	0	1	0	0	0	10242	690	24	4	273	4	NALCN	13	101710363	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	401828	101710363	13459515	1654	40648											
ERCC5	2073	broad.mit.edu	37	chr13	103528219	103528219	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaagaaaagaaggaaacTaagacgtgcgaggggaagaa	16	3	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103528219	C	C	103528219	3	2	24	1	0	0	0	0	1	0	0	0	5258	1522	53	5	3585	5	ERCC5	13	103528219	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1817856	103528219	11641659	1655	40649											
SLC10A2	6555	broad.mit.edu	37	chr13	103718394	103718394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgacagaggaagccaacaCaaatgccccacggccgcttt	9	14	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103718394	T	T	103718394	3	4	24	1	0	0	0	0	1	0	0	0	14487	478	17	4	864	4	SLC10A2	13	103718394	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	190175	103718394	11451484	1656	40650											
MYO16	23026	broad.mit.edu	37	chr13	109364925	109364925	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacagctgtttgcattttaGatattaacgaaagcctacac	6	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109364925	T	T	109364925	1	4	24	0	1	0	0	0	0	0	0	0	10158	957	33	3		3	MYO16	13	109364925	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5646531	109364925	5804953	1657	40651											
MYO16	23026	broad.mit.edu	37	chr13	109535358	109535358	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattatgggatgaggaatacTggcgccttttcactgaggtt	12	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109535358	A	A	109535358	1	1	24	0	1	0	0	0	0	0	0	0	10158	1595	55	5		5	MYO16	13	109535358	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	170433	109535358	5634520	1658	40652											
COL4A1	1282	broad.mit.edu	37	chr13	110822946	110822946	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcctttgggcccctccgtGgcatggcctggggatcccgg	14	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110822946	C	C	110822946	2	2	24	1	0	0	0	0	0	0	0	1	3721	1335	47	4		4	COL4A1	13	110822946	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1287588	110822946	4346932	1659	40653											
MCF2L	23263	broad.mit.edu	37	chr13	113742170	113742170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacgaatggtttctcatGggaaccagtgcaaggatctg	12	9	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113742170	T	T	113742170	1	4	24	0	1	0	0	0	0	0	0	0	9472	1363	47	2		2	MCF2L	13	113742170	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2919224	113742170	1427708	1660	40654											
POTEG	404785	broad.mit.edu	37	chr14	19566158	19566158	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagggaccggttttgtggaAgacaatctttccatgggctg	13	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19566158	C	C	19566158	1	2	24	0	1	0	0	0	0	0	0	0	12362	87	3	5		5	POTEG	14	19566158	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08		19566158	87783382	1661	40655											
OR4M1	441670	broad.mit.edu	37	chr14	20248529	20248530	+	Missense_Mutation	DNP	CC	AG	AG													acagaatttgttctcactggCctatcccagactcgggaggt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	20248530	AG	AG	20248529	3	1	24	1	0	0	0	0	1	0	0	0	11169	726	26	3	50	3	OR4M1	14	20248529	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	682371	20248529	87101011	1662	40656											
OR4K13	390433	broad.mit.edu	37	chr14	20502482	20502482	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaactgcataggaggataAcagtagcccagtgagcaccc	10	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20502482	C	C	20502482	3	2	24	1	0	0	0	0	1	0	0	0	11162	40	2	5	480	5	OR4K13	14	20502482	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	253953	20502482	86847058	1663	40657											
OR4N5	390437	broad.mit.edu	37	chr14	20612634	20612634	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccacccatattatcattaTatttctcatgtttggacctg	4	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20612634	C	C	20612634	3	2	24	1	0	0	0	0	1	0	0	0	11173	1406	49	5	742	5	OR4N5	14	20612634	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	110152	20612634	86736906	1664	40658											
SLC39A2	29986	broad.mit.edu	37	chr14	21468867	21468867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaatctcctgacctcaaGtgatctgcccacttcagtct	5	15	6	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21468867	T	T	21468867	1	4	24	0	1	0	0	0	0	0	0	0	14732	1044	36	3		3	SLC39A2	14	21468867	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	856233	21468867	85880673	1665	40659											
SALL2	6297	broad.mit.edu	37	chr14	21992359	21992359	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagggagtcctggagcCgtggctgtgcctgcactggt	16	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21992359	T	T	21992359	2	4	24	1	0	0	0	0	0	0	0	1	13922	639	23	4		4	SALL2	14	21992359	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	523492	21992359	85357181	1666	40660											
OR10G3	26533	broad.mit.edu	37	chr14	22038868	22038868	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaacagtgtgctgttgattCtttccatatcccagagaatc	7	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22038868	G	G	22038868	3	3	24	1	0	0	0	0	1	0	0	0	10994	913	32	4	936	4	OR10G3	14	22038868	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	46509	22038868	85310672	1667	40661											
SLC7A7	9056	broad.mit.edu	37	chr14	23282625	23282625	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggtggaggagaggaaacCcttcaccagcttcctggcat	12	11	1	1	rs72552273	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23282625	A	A	23282625	1	1	24	0	1	0	0	0	0	0	0	0	14817	638	22	2		2	SLC7A7	14	23282625	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1243757	23282625	84066915	1668	40662											
C14orf119	55017	broad.mit.edu	37	chr14	23567325	23567325	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagataaccatagctgAtggagccatgactctctaca	8	9	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23567325	T	T	23567325	1	4	24	0	1	0	0	0	0	0	0	0	1755	348	12	5		5	C14orf119	14	23567325	3'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	284700	23567325	83782215	1669	40663											
SLC7A8	23428	broad.mit.edu	37	chr14	23596443	23596443	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggagtgggttggtacatGggctgctgctgctcctccat	16	9	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23596443	A	A	23596443	2	1	24	1	0	0	0	0	0	0	0	1	14818	1335	47	4		4	SLC7A8	14	23596443	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	29118	23596443	83753097	1670	40664											
CMTM5	116173	broad.mit.edu	37	chr14	23847565	23847565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtcctgcaggccctgaCcctcatcatcttcatctgct	7	17	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847565	A	A	23847565	3	1	24	1	0	0	0	0	1	0	0	0	3618	507	18	3	140	3	CMTM5	14	23847565	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	251122	23847565	83501975	1671	40665											
MYH6	4624	broad.mit.edu	37	chr14	23852576	23852576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttggagggggagcaaatGcaatcacctttccctcctcc	11	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23852576	T	T	23852576	1	4	24	0	1	0	0	0	0	0	0	0	10132	1334	46	3		3	MYH6	14	23852576	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5011	23852576	83496964	1672	40666											
MYH7	4625	broad.mit.edu	37	chr14	23886822	23886822	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagccggtgcttggtcttctCcagcgaggagcacttggcat	13	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23886822	G	G	23886822	3	3	24	1	0	0	0	0	1	0	0	0	10133	864	30	4	1604	4	MYH7	14	23886822	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	34246	23886822	83462718	1673	40667											
MYH7	4625	broad.mit.edu	37	chr14	23893391	23893391	+	Intron	DEL	G	-	-													aacagaggggaggctgttcaGggggtaaggtcctcattctt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23893391	-	-	23893391	6	5	24	0	1	1	0	1	0	0	0	0	10133	1015	35	0		0	MYH7	14	23893391	Intron	DEL	G	TCGA-05-4427-01A-21D-1855-08	6569	23893391	83456149	1674	40668											
JPH4	84502	broad.mit.edu	37	chr14	24040527	24040527	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccggcaggcagggggtcgCcagggttggcgggaggaggc	22	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24040527	T	T	24040527	4	4	24	1	0	0	0	0	0	1	0	0	8033	740	26	4	481	4	JPH4	14	24040527	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	147136	24040527	83309013	1675	40669											
LRRC16B	90668	broad.mit.edu	37	chr14	24537988	24537988	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacccagcatcttccttcctCtgccagctacaggaccccgc	7	19	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24537988	T	T	24537988	1	4	24	0	1	0	0	0	0	0	0	0	9059	928	32	4		4	LRRC16B	14	24537988	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	497461	24537988	82811552	1676	40670											
PCK2	5106	broad.mit.edu	37	chr14	24566274	24566274	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catctgtgatggaactgaggCtgagaatactgccacactga	11	9	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24566274	G	G	24566274	3	3	24	1	0	0	0	0	1	0	0	0	11676	797	28	4	209	4	PCK2	14	24566274	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	28286	24566274	82783266	1677	40671											
FAM158A	51016	broad.mit.edu	37	chr14	24608594	24608594	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatccttagggacccagcGgagaccttggttctccagga	11	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24608594	A	A	24608594	3	1	24	1	0	0	0	0	1	0	0	0	5513	1116	39	4	219	4	FAM158A	14	24608594	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	42320	24608594	82740946	1678	40672											
SCFD1	23256	broad.mit.edu	37	chr14	31099691	31099691	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttaataggtactcatTtatgacagatttggccaaga	7	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31099691	G	G	31099691	3	3	24	1	0	0	0	0	1	0	0	0	14001	1829	64	5	151	5	SCFD1	14	31099691	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	6491097	31099691	76249849	1679	40673											
STRN3	29966	broad.mit.edu	37	chr14	31404599	31404599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataactacatttacacaccCattttaaaattacttggatc	2	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31404599	A	A	31404599	1	1	24	0	1	0	0	0	0	0	0	0	15448	609	21	2		2	STRN3	14	31404599	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	304908	31404599	75944941	1680	40674											
HEATR5A	25938	broad.mit.edu	37	chr14	31852721	31852721	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatacatagagaatgaaatCattaccttgccttttccatg	5	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31852721	A	A	31852721	1	1	24	0	1	0	0	0	0	0	0	0	7098	841	29	3		3	HEATR5A	14	31852721	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	448122	31852721	75496819	1681	40675											
AKAP6	9472	broad.mit.edu	37	chr14	33004659	33004659	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgtgctactgttggcccTgataattggtgttaggtaag	12	6	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33004659	C	C	33004659	1	2	24	0	1	0	0	0	0	0	0	0	455	1595	55	5		5	AKAP6	14	33004659	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1151938	33004659	74344881	1682	40676											
NPAS3	64067	broad.mit.edu	37	chr14	33684704	33684704	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagacaaaatgtttaccatCatcctttcttcttttcctgc	3	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33684704	T	T	33684704	1	4	24	0	1	0	0	0	0	0	0	0	10659	841	29	4		4	NPAS3	14	33684704	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	680045	33684704	73664836	1683	40677											
NPAS3	64067	broad.mit.edu	37	chr14	34269137	34269137	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggactttgagaaccccaagGcgggcgaggacggcttcggt	16	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34269137	A	A	34269137	3	1	24	1	0	0	0	0	1	0	0	0	10659	1203	42	4	1725	4	NPAS3	14	34269137	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	584433	34269137	73080403	1684	40678											
EGLN3	112399	broad.mit.edu	37	chr14	34419597	34419597	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggcagggcgccgagcgcgtCctaccttagacctctccttg	12	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34419597	A	A	34419597	1	1	24	0	1	0	0	0	0	0	0	0	5010	870	30	3		3	EGLN3	14	34419597	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	150460	34419597	72929943	1685	40679											
CTAGE5	4253	broad.mit.edu	37	chr14	39818034	39818034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctcttgctccaatcagaGgtccattgtttccagtggat	8	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39818034	T	T	39818034	3	4	24	1	0	0	0	0	1	0	0	0	4028	1000	35	2	2222	2	CTAGE5	14	39818034	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5398437	39818034	67531506	1686	40680											
LRFN5	145581	broad.mit.edu	37	chr14	42357003	42357003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatatccatgagcctgatcCtggttcttcagatatctcaa	6	12	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42357003	A	A	42357003	3	1	24	1	0	0	0	0	1	0	0	0	9028	681	24	2	1177	2	LRFN5	14	42357003	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2538969	42357003	64992537	1687	40681											
FKBP3	2287	broad.mit.edu	37	chr14	45603511	45603511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggggggtgaggcgtcCctcagccgcaccagcccggc	15	17	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45603511	A	A	45603511	1	1	24	0	1	0	0	0	0	0	0	0	5966	638	22	2		2	FKBP3	14	45603511	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3246508	45603511	61746029	1688	40682											
RPL10L	140801	broad.mit.edu	37	chr14	47120772	47120772	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagacagctgctcataTtcatcagacaccatgtggcc	8	12	4	3	rs138905696		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47120772	G	G	47120772	3	3	24	1	0	0	0	0	1	0	0	0	13667	1490	52	5	480	5	RPL10L	14	47120772	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1517261	47120772	60228768	1689	40683											
MDGA2	161357	broad.mit.edu	37	chr14	47600874	47600874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagagtttttaaacattaGttgtagataagatacatgta	8	2	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47600874	T	T	47600874	1	4	24	0	1	0	0	0	0	0	0	0	9500	1044	36	3		3	MDGA2	14	47600874	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	480102	47600874	59748666	1690	40684											
PPIL5	122769	broad.mit.edu	37	chr14	50074788	50074788	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttccagtaataaagctgcAagcaccattaactttattgg	6	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50074788	G	G	50074788	3	3	24	1	0	0	0	0	1	0	0	0	12431	130	5	5	963	5	PPIL5	14	50074788	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2473914	50074788	57274752	1691	40685											
ATL1	51062	broad.mit.edu	37	chr14	51080040	51080040	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcatatggagccgatggtGgtgccaaattcttggaaaaa	11	6	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51080040	C	C	51080040	3	2	24	1	0	0	0	0	1	0	0	0	1110	1348	47	4	720	4	ATL1	14	51080040	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1005252	51080040	56269500	1692	40686											
NIN	51199	broad.mit.edu	37	chr14	51196186	51196186	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgaactggtataactttCaaataaacaggtaaaattaa	5	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51196186	T	T	51196186	1	4	24	0	1	0	0	0	0	0	0	0	10512	841	29	4		4	NIN	14	51196186	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	116146	51196186	56153354	1693	40687											
NID2	22795	broad.mit.edu	37	chr14	52507389	52507389	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagtcggagtagtggtacAgctccttgtagggagagatg	17	5	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52507389	T	T	52507389	3	4	24	1	0	0	0	0	1	0	0	0	10510	188	7	5	2181	5	NID2	14	52507389	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1311203	52507389	54842151	1694	40688											
NID2	22795	broad.mit.edu	37	chr14	52526869	52526869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttttcacagactgttcaGtgctagtcaagctgaaatat	8	7	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52526869	T	T	52526869	3	4	24	1	0	0	0	0	1	0	0	0	10510	1029	36	3	3467	3	NID2	14	52526869	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	19480	52526869	54822671	1695	40689											
NID2	22795	broad.mit.edu	37	chr14	52535718	52535718	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtccccctccatgctcgCtcggccgtgcgcttacccgc	10	21	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52535718	T	T	52535718	1	4	24	0	1	0	0	0	0	0	0	0	10510	812	28	4		4	NID2	14	52535718	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	8849	52535718	54813822	1696	40690											
PTGER2	5732	broad.mit.edu	37	chr14	52781861	52781861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggaccgcttacctgcagCtgtacgccaccctgctgctg	12	16	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52781861	A	A	52781861	3	1	24	1	0	0	0	0	1	0	0	0	12849	796	28	3	597	3	PTGER2	14	52781861	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	246143	52781861	54567679	1697	40691											
PELI2	57161	broad.mit.edu	37	chr14	56763321	56763321	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcaaacttgttgtaggtgGaaagtgagaccaacgtcctg	11	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56763321	T	T	56763321	4	4	24	1	0	0	0	0	0	1	0	0	11816	1175	41	3	722	3	PELI2	14	56763321	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3981460	56763321	50586219	1698	40692											
C14orf101	54916	broad.mit.edu	37	chr14	57092056	57092056	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaacttgattctttctaaGaaatatattaaaagtctgac	4	5	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57092056	T	T	57092056	1	4	24	0	1	0	0	0	0	0	0	0	1747	957	33	3		3	C14orf101	14	57092056	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	328735	57092056	50257484	1699	40693											
PSMA3	5684	broad.mit.edu	37	chr14	58730469	58730469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaggcaagctgcaaagaCggaaatagagaagcttcagg	13	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58730469	T	T	58730469	3	4	24	1	0	0	0	0	1	0	0	0	12774	536	19	4	550	4	PSMA3	14	58730469	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1638413	58730469	48619071	1700	40694											
KIAA0586	9786	broad.mit.edu	37	chr14	58955345	58955345	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttattttcttagtgtaatGtctgtggctaaggatgaaga	10	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58955345	A	A	58955345	3	1	24	1	0	0	0	0	1	0	0	0	8256	1377	48	4	3396	4	KIAA0586	14	58955345	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	224876	58955345	48394195	1701	40695											
DACT1	51339	broad.mit.edu	37	chr14	59112833	59112833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggccctgccccgccgCaggagaacaaagttgtacag	13	13	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59112833	A	A	59112833	3	1	24	1	0	0	0	0	1	0	0	0	4255	711	25	3	1506	3	DACT1	14	59112833	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	157488	59112833	48236707	1702	40696											
DACT1	51339	broad.mit.edu	37	chr14	59113737	59113737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcaaacggtaacggcccCagaccttcacaaccaccccg	6	18	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59113737	A	A	59113737	3	1	24	1	0	0	0	0	1	0	0	0	4255	594	21	2	2410	2	DACT1	14	59113737	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	904	59113737	48235803	1703	40697											
RTN1	6252	broad.mit.edu	37	chr14	60097102	60097102	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaatgatgcacaatggaCgagtccaggtcccgggtttc	13	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60097102	G	G	60097102	1	3	24	0	1	0	0	0	0	0	0	0	13836	551	19	4		4	RTN1	14	60097102	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	983365	60097102	47252438	1704	40698											
MNAT1	4331	broad.mit.edu	37	chr14	61201479	61201479	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgaagggaccgtctctgccAagcgcctgttggtaggaacc	14	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61201479	G	G	61201479	1	3	24	0	1	0	0	0	0	0	0	0	9768	145	5	5		5	MNAT1	14	61201479	5'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	1104377	61201479	46148061	1705	40699											
MNAT1	4331	broad.mit.edu	37	chr14	61263095	61263095	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgctaaagatgtaagtaTtcctgctcgaatgattcagt	9	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61263095	G	G	61263095	1	3	24	0	1	0	0	0	0	0	0	0	9768	1508	52	5		5	MNAT1	14	61263095	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	61616	61263095	46086445	1706	40700											
SYT16	83851	broad.mit.edu	37	chr14	62547824	62547824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggtcacctttgccaaGctggagcccagagatgtggc	14	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62547824	T	T	62547824	3	4	24	1	0	0	0	0	1	0	0	0	15591	962	34	3	1280	3	SYT16	14	62547824	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1284729	62547824	44801716	1707	40701											
KCNH5	27133	broad.mit.edu	37	chr14	63174404	63174404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccacctgcttttctaggGcagtcattctgcagctgagc	10	13	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63174404	T	T	63174404	3	4	24	1	0	0	0	0	1	0	0	0	8105	1203	42	3	181	3	KCNH5	14	63174404	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	626580	63174404	44175136	1708	40702											
FNTB	2342	broad.mit.edu	37	chr14	65417199	65417199	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccaattttccctacagagTctgcactgcctccagcccac	5	19	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65417199	A	A	65417199	1	1	24	0	1	0	0	0	0	0	0	0	6036	1682	58	5		5	FNTB	14	65417199	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2242795	65417199	41932341	1709	40703											
MAX	4149	broad.mit.edu	37	chr14	65543306	65543306	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgctgcccttggcgttgGtgtagaggctgttgtctgag	17	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65543306	A	A	65543306	3	1	24	1	0	0	0	0	1	0	0	0	9431	1261	44	4	200	4	MAX	14	65543306	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	126107	65543306	41806234	1710	40704											
DCAF5	8816	broad.mit.edu	37	chr14	69541945	69541945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaatttcctttggtcaCagcttatgttagaaatgttg	7	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69541945	A	A	69541945	1	1	24	0	1	0	0	0	0	0	0	0	4306	493	17	3		3	DCAF5	14	69541945	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3998639	69541945	37807595	1711	40705											
SLC8A3	6547	broad.mit.edu	37	chr14	70515545	70515545	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaatctttgagaccaatGgtgcagccgaagtgcgaggc	13	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70515545	T	T	70515545	2	4	24	1	0	0	0	0	0	0	0	1	14822	1335	47	2		2	SLC8A3	14	70515545	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	973600	70515545	36833995	1712	40706											
MAP3K9	4293	broad.mit.edu	37	chr14	71206862	71206862	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtaggggaggcctgcacCgtgaacttgtgctggaaatc	15	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71206862	A	A	71206862	2	1	24	1	0	0	0	0	0	0	0	1	9349	639	23	1		1	MAP3K9	14	71206862	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	691317	71206862	36142678	1713	40707											
ZFYVE1	53349	broad.mit.edu	37	chr14	73459868	73459868	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccttcagggctttgaagaTgactcccgggtgccggggag	16	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73459868	A	A	73459868	3	1	24	1	0	0	0	0	1	0	0	0	17789	1464	51	5	1183	5	ZFYVE1	14	73459868	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	2253006	73459868	33889672	1714	40708											
HEATR4	399671	broad.mit.edu	37	chr14	73980718	73980718	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaacgtacagtatcacagGacctcccttcactcactcag	5	15	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73980718	T	T	73980718	1	4	24	0	1	0	0	0	0	0	0	0	7097	1189	41	3		3	HEATR4	14	73980718	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	520850	73980718	33368822	1715	40709											
TTLL5	23093	broad.mit.edu	37	chr14	76241935	76241935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaacgcagaagaatcctgGcccaccagctgggtgacttt	12	11	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76241935	T	T	76241935	3	4	24	1	0	0	0	0	1	0	0	0	16856	1203	42	3	2327	3	TTLL5	14	76241935	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2261217	76241935	31107605	1716	40710											
ESRRB	2103	broad.mit.edu	37	chr14	76905865	76905865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacccacgccaacggtctgGactcgccacccatgtttgca	9	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76905865	T	T	76905865	3	4	24	1	0	0	0	0	1	0	0	0	5303	1174	41	3	171	3	ESRRB	14	76905865	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	663930	76905865	30443675	1717	40711											
GSTZ1	2954	broad.mit.edu	37	chr14	77796651	77796651	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacccaccgggacctctttcAggtgaccatggctgatctgt	10	13	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77796651	T	T	77796651	5	4	24	1	0	0	0	0	0	0	1	0	6913	202	7	5	503	5	GSTZ1	14	77796651	Splice_Site	SNP	A	TCGA-05-4427-01A-21D-1855-08	890786	77796651	29552889	1718	40712											
NRXN3	9369	broad.mit.edu	37	chr14	79117635	79117635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgacttgcctggctcccCtgtcagcaacaacttcatgg	9	15	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79117635	A	A	79117635	3	1	24	1	0	0	0	0	1	0	0	0	10762	681	24	2	70	2	NRXN3	14	79117635	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1320984	79117635	28231905	1719	40713											
NRXN3	9369	broad.mit.edu	37	chr14	79175831	79175831	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagaggaaggatgctcGgagccagaagaatacaaaag	13	7	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79175831	A	A	79175831	3	1	24	1	0	0	0	0	1	0	0	0	10762	1116	39	4	380	4	NRXN3	14	79175831	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	58196	79175831	28173709	1720	40714											
NRXN3	9369	broad.mit.edu	37	chr14	79434533	79434533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgatctctatatggctGgtctggcccaaggcatgtac	12	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79434533	T	T	79434533	3	4	24	1	0	0	0	0	1	0	0	0	10762	1348	47	2	1901	2	NRXN3	14	79434533	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	258702	79434533	27915007	1721	40715											
TSHR	7253	broad.mit.edu	37	chr14	81448888	81448888	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggagatgatgctagttTtgaccctaatcctcaatctg	10	8	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81448888	G	G	81448888	1	3	24	0	1	0	0	0	0	0	0	0	16747	1856	64	5		5	TSHR	14	81448888	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2014355	81448888	25900652	1722	40716											
TSHR	7253	broad.mit.edu	37	chr14	81554321	81554321	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcggaataccaggaactTaacttacatagaccctgatg	7	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81554321	A	A	81554321	4	1	24	1	0	0	0	0	0	1	0	0	16747	1764	61	5	355	5	TSHR	14	81554321	Nonsense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	105433	81554321	25795219	1723	40717											
STON2	85439	broad.mit.edu	37	chr14	81744066	81744066	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcgtaattggtggtgcccAgcttaatcacctgttccctc	8	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81744066	T	T	81744066	3	4	24	1	0	0	0	0	1	0	0	0	15436	188	7	5	1134	5	STON2	14	81744066	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	189745	81744066	25605474	1724	40718											
GALC	2581	broad.mit.edu	37	chr14	88454442	88454442	+	Intron	DEL	G	-	-													agtccatatgctgaggtataGattaaaatgttgatgggaga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88454442	-	-	88454442	6	5	24	0	1	1	0	1	0	0	0	0	6263	957	33	0		0	GALC	14	88454442	Intron	DEL	G	TCGA-05-4427-01A-21D-1855-08	6710376	88454442	18895098	1725	40719											
KCNK10	54207	broad.mit.edu	37	chr14	88729806	88729806	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcgggaggaaatggacaGgcgcggagttggagtcggag	21	6	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88729806	A	A	88729806	2	1	24	1	0	0	0	0	0	0	0	1	8129	991	35	4		4	KCNK10	14	88729806	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	275364	88729806	18619734	1726	40720											
KCNK10	54207	broad.mit.edu	37	chr14	88729829	88729829	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggagttggagtcggagccGgagccgggggttgcccgtta	20	9	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88729829	C	C	88729829	3	2	24	1	0	0	0	0	1	0	0	0	8129	1116	39	4	1536	4	KCNK10	14	88729829	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	23	88729829	18619711	1727	40721											
CCDC88C	440193	broad.mit.edu	37	chr14	91772188	91772188	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgcagtgtcaagatcTggctgctgaaggtcacgttc	12	9	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91772188	G	G	91772188	3	3	24	1	0	0	0	0	1	0	0	0	2893	1580	55	5	2856	5	CCDC88C	14	91772188	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	3042359	91772188	15577352	1728	40722											
KIAA1409	57578	broad.mit.edu	37	chr14	94103593	94103593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggaaacgccagtgtaaCgtgccaacgtgcctaaaccc	10	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94103593	A	A	94103593	3	1	24	1	0	0	0	0	1	0	0	0	8300	535	19	3	5452	3	KIAA1409	14	94103593	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2331405	94103593	13245947	1729	40723											
KIAA1409	57578	broad.mit.edu	37	chr14	94160683	94160683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtttgttgtttcagatGgtagaaatggtgtgtctcca	11	5	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94160683	T	T	94160683	3	4	24	1	0	0	0	0	1	0	0	0	8300	1348	47	2	7237	2	KIAA1409	14	94160683	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	57090	94160683	13188857	1730	40724											
SERPINA6	866	broad.mit.edu	37	chr14	94772431	94772431	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgatgacttcagctgggcgtCctgggtgatgcgtgagaaat	15	7	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94772431	G	G	94772431	3	3	24	1	0	0	0	0	1	0	0	0	14206	855	30	4	216	4	SERPINA6	14	94772431	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	611748	94772431	12577109	1731	40725											
SERPINA4	5267	broad.mit.edu	37	chr14	95030062	95030062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttttctccccgctgagCatctcggcggcctacgccat	8	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95030062	A	A	95030062	3	1	24	1	0	0	0	0	1	0	0	0	14204	709	25	3	245	3	SERPINA4	14	95030062	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	257631	95030062	12319478	1732	40726											
SERPINA5	5104	broad.mit.edu	37	chr14	95053825	95053825	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggtgccacggtggccccCagcagcagaagggactttac	14	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95053825	A	A	95053825	2	1	24	1	0	0	0	0	0	0	0	1	14205	581	21	2		2	SERPINA5	14	95053825	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	23763	95053825	12295715	1733	40727											
SERPINA5	5104	broad.mit.edu	37	chr14	95058421	95058421	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaaagctgtggtggaggtgGacgagtcgggaaccagagca	17	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95058421	C	C	95058421	3	2	24	1	0	0	0	0	1	0	0	0	14205	1174	41	4	1080	4	SERPINA5	14	95058421	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4596	95058421	12291119	1734	40728											
SERPINA5	5104	broad.mit.edu	37	chr14	95058540	95058540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgttcattgtggataaCaacatcctcttccttggcaa	7	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95058540	A	A	95058540	3	1	24	1	0	0	0	0	1	0	0	0	14205	477	17	3	1199	3	SERPINA5	14	95058540	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	119	95058540	12291000	1735	40729											
DICER1	23405	broad.mit.edu	37	chr14	95571475	95571475	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctgggctcttagctcctCtgcagtcaaaaggcagtgaa	11	10	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95571475	T	T	95571475	3	4	24	1	0	0	0	0	1	0	0	0	4561	922	32	4	2598	4	DICER1	14	95571475	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	512935	95571475	11778065	1736	40730											
TCL1B	9623	broad.mit.edu	37	chr14	96157705	96157705	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgcgtctcagtgtagGgatcagacgaaagtgagaag	14	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96157705	A	A	96157705	1	1	24	0	1	0	0	0	0	0	0	0	15827	1247	43	4		4	TCL1B	14	96157705	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	586230	96157705	11191835	1737	40731											
ATG2B	55102	broad.mit.edu	37	chr14	96789104	96789104	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaattttaaaaagaccaaGatctaagtgtaaacagcaaa	6	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96789104	C	C	96789104	1	2	24	0	1	0	0	0	0	0	0	0	1098	957	33	4		4	ATG2B	14	96789104	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	631399	96789104	10560436	1738	40732											
TDRD9	122402	broad.mit.edu	37	chr14	104457449	104457449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattttagagaagcaataGctgttattagccttcattaa	8	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104457449	T	T	104457449	1	4	24	0	1	0	0	0	0	0	0	0	15858	986	34	3		3	TDRD9	14	104457449	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	7668345	104457449	2892091	1739	40733											
INF2	64423	broad.mit.edu	37	chr14	105170250	105170250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccctgtccgtcccttccCagggctgcagctgctggacg	12	16	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105170250	T	T	105170250	1	4	24	0	1	0	0	0	0	0	0	0	7804	609	21	4		4	INF2	14	105170250	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	712801	105170250	2179290	1740	40734											
AHNAK2	113146	broad.mit.edu	37	chr14	105410706	105410706	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccagcctggaccttcagGtcggcagaagggggctgaat	16	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105410706	A	A	105410706	2	1	24	1	0	0	0	0	0	0	0	1	415	1252	44	4		4	AHNAK2	14	105410706	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	240456	105410706	1938834	1741	40735											
GABRA5	2558	broad.mit.edu	37	chr15	27185194	27185194	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtccttttggctgaacCgggaatcagtcccagccagg	13	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27185194	G	G	27185194	3	3	24	1	0	0	0	0	1	0	0	0	6224	643	23	4	873	4	GABRA5	15	27185194	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08		27185194	75346198	1742	40736											
GABRG3	2567	broad.mit.edu	37	chr15	27725783	27725783	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcaagtgctaatgtttgcTctgtgtttttagatggctat	9	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27725783	A	A	27725783	1	1	24	0	1	0	0	0	0	0	0	0	6233	1566	54	5		5	GABRG3	15	27725783	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	540589	27725783	74805609	1743	40737											
GABRG3	2567	broad.mit.edu	37	chr15	27777962	27777962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggactcgtactcccggGtctttttccccacgtccttc	8	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27777962	T	T	27777962	3	4	24	1	0	0	0	0	1	0	0	0	6233	1261	44	3	1377	3	GABRG3	15	27777962	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	52179	27777962	74753430	1744	40738											
OCA2	4948	broad.mit.edu	37	chr15	28000606	28000606	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaggacacaaccatcatTgggaagcccagcctgaaata	10	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28000606	A	A	28000606	2	1	24	1	0	0	0	0	0	0	0	1	10910	1799	63	5		5	OCA2	15	28000606	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	222644	28000606	74530786	1745	40739											
OCA2	4948	broad.mit.edu	37	chr15	28326902	28326902	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagctccaccggctcccCgaggaagcctgcgcttgccg	13	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28326902	T	T	28326902	3	4	24	1	0	0	0	0	1	0	0	0	10910	652	23	4	2489	4	OCA2	15	28326902	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	326296	28326902	74204490	1746	40740											
FAM189A1	23359	broad.mit.edu	37	chr15	29526295	29526295	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttcttcgaaccgtcttgaTaacatatcagacattctctg	6	11	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29526295	C	C	29526295	1	2	24	0	1	0	0	0	0	0	0	0	5562	1421	49	5		5	FAM189A1	15	29526295	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1199393	29526295	73005097	1747	40741											
MTMR15	22909	broad.mit.edu	37	chr15	31202973	31202973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacagcgttcagtctgcaCttggggcaagaataagcctg	11	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31202973	A	A	31202973	3	1	24	1	0	0	0	0	1	0	0	0	10037	565	20	3	1542	3	MTMR15	15	31202973	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1676678	31202973	71328419	1748	40742											
RYR3	6263	broad.mit.edu	37	chr15	34015011	34015011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggggtgaggggggaaacGggctcttggcagccatgcag	20	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34015011	T	T	34015011	3	4	24	1	0	0	0	0	1	0	0	0	13881	1116	39	1	6889	1	RYR3	15	34015011	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2812038	34015011	68516381	1749	40743											
SLC12A6	9990	broad.mit.edu	37	chr15	34528409	34528409	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccaattgtgcctgaggaaGaaggtccaacacaagttatt	9	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34528409	A	A	34528409	1	1	24	0	1	0	0	0	0	0	0	0	14500	957	33	4		4	SLC12A6	15	34528409	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	513398	34528409	68002983	1750	40744											
C15orf41	84529	broad.mit.edu	37	chr15	36906363	36906363	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtattctgtacacagagGttgctggaccagactctgct	12	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36906363	C	C	36906363	1	2	24	0	1	0	0	0	0	0	0	0	1808	1276	44	4		4	C15orf41	15	36906363	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2377954	36906363	65625029	1751	40745											
BAHD1	22893	broad.mit.edu	37	chr15	40751681	40751681	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagtcacctgcccctaagCaggaactgcatcagccctct	9	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40751681	T	T	40751681	4	4	24	1	0	0	0	0	0	1	0	0	1302	711	25	4	1020	4	BAHD1	15	40751681	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3845318	40751681	61779711	1752	40746											
VPS18	57617	broad.mit.edu	37	chr15	41188326	41188326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggactagagaggtgtttGgggactgttaactcactggg	16	5	1	1	rs149774376	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41188326	T	T	41188326	1	4	24	0	1	0	0	0	0	0	0	0	17321	1363	47	2		2	VPS18	15	41188326	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	436645	41188326	61343066	1753	40747											
CAPN3	825	broad.mit.edu	37	chr15	42703407	42703407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacagcactgggcacatGgtcctctgaggggaagttac	15	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42703407	T	T	42703407	1	4	24	0	1	0	0	0	0	0	0	0	2654	1363	47	2		2	CAPN3	15	42703407	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1515081	42703407	59827985	1754	40748											
CKMT1B	1159	broad.mit.edu	37	chr15	43891507	43891507	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgatgactcaagattcccagGagttctgctcattctaatga	8	9	4	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43891507	A	A	43891507	1	1	24	0	1	0	0	0	0	0	0	0	3481	1189	41	4		4	CKMT1B	15	43891507	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	1188100	43891507	58639885	1755	40749											
SPG11	80208	broad.mit.edu	37	chr15	44876444	44876444	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcctcctgatttcttcCaagagtgtgctgggtgatgc	11	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44876444	A	A	44876444	4	1	24	1	0	0	0	0	0	1	0	0	15159	603	21	2	1941	2	SPG11	15	44876444	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	984937	44876444	57654948	1756	40750											
SEMA6D	80031	broad.mit.edu	37	chr15	47873463	47873463	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggcccccaaccctattttCtccataagtcctgtggttta	7	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47873463	T	T	47873463	1	4	24	0	1	0	0	0	0	0	0	0	14155	928	32	4		4	SEMA6D	15	47873463	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2997019	47873463	54657929	1757	40751											
SLC24A5	283652	broad.mit.edu	37	chr15	48414122	48414122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttttcacgagacaggagCgcagagatggaggcatcata	14	7	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48414122	A	A	48414122	3	1	24	1	0	0	0	0	1	0	0	0	14583	768	27	3	196	3	SLC24A5	15	48414122	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	540659	48414122	54117270	1758	40752											
MYEF2	50804	broad.mit.edu	37	chr15	48441224	48441224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatctgcagtcatttgcataCttaccacactgactgaattt	5	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48441224	T	T	48441224	1	4	24	0	1	0	0	0	0	0	0	0	10118	580	20	4		4	MYEF2	15	48441224	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	27102	48441224	54090168	1759	40753											
FBN1	2200	broad.mit.edu	37	chr15	48766841	48766841	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctccaatttcacattcaTtgatgtctggaaaaatgagc	8	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48766841	A	A	48766841	3	1	24	1	0	0	0	0	1	0	0	0	5759	1493	52	5	4780	5	FBN1	15	48766841	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	325617	48766841	53764551	1760	40754											
WDR72	256764	broad.mit.edu	37	chr15	54007479	54007479	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaacaacagccaaagttTtggcatcaattataaggaca	8	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54007479	C	C	54007479	3	2	24	1	0	0	0	0	1	0	0	0	17449	1841	64	5	2947	5	WDR72	15	54007479	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	5240638	54007479	48523913	1761	40755											
UNC13C	440279	broad.mit.edu	37	chr15	54305853	54305853	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatctttaaggaacttcaGggaataagtcagattgaaac	9	5	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54305853	T	T	54305853	3	4	24	1	0	0	0	0	1	0	0	0	17112	991	35	2	755	2	UNC13C	15	54305853	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	298374	54305853	48225539	1762	40756											
RSL24D1	51187	broad.mit.edu	37	chr15	55483308	55483308	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtagaaaggaaacatttcTtaaaacgtcttccttttcct	6	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55483308	A	A	55483308	1	1	24	0	1	0	0	0	0	0	0	0	13812	1624	56	5		5	RSL24D1	15	55483308	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1177455	55483308	47048084	1763	40757											
GCOM1	145781	broad.mit.edu	37	chr15	57976837	57976837	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgaggctctgatccacttCtaagacaggaaggaaagtga	12	8	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57976837	G	G	57976837	1	3	24	0	1	0	0	0	0	0	0	0	6367	928	32	4		4	GCOM1	15	57976837	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	2493529	57976837	44554555	1764	40758											
LIPC	3990	broad.mit.edu	37	chr15	58855785	58855785	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgagctgatcatgatcaaGttcaagtgggaaaacagtgc	13	7	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58855785	C	C	58855785	3	2	24	1	0	0	0	0	1	0	0	0	8893	1020	36	4	1281	4	LIPC	15	58855785	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	878948	58855785	43675607	1765	40759											
RORA	6095	broad.mit.edu	37	chr15	60849023	60849023	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcgtaaatgaagaaacctTgcaaattacagtggatgttt	8	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60849023	C	C	60849023	1	2	24	0	1	0	0	0	0	0	0	0	13639	1827	63	5		5	RORA	15	60849023	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1993238	60849023	41682369	1766	40760											
RORA	6095	broad.mit.edu	37	chr15	60970879	60970880	+	Missense_Mutation	DNP	GA	CT	CT													tatgtgtcttcttcgttactGagatacctggaagagaagaa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	60970880	CT	CT	60970879	3	2	24	1	0	0	0	0	1	0	0	0	13639	1294	45	4	1918	4	RORA	15	60970879	Missense_Mutation	DNP	GA	TCGA-05-4427-01A-21D-1855-08	121856	60970879	41560513	1767	40761											
VPS13C	54832	broad.mit.edu	37	chr15	62276213	62276213	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctaatttcgcttctacccTataatccaatgaagaacaag	4	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62276213	C	C	62276213	5	2	24	1	0	0	0	0	0	0	1	0	17318	1536	53	5	9833	5	VPS13C	15	62276213	Splice_Site	SNP	T	TCGA-05-4427-01A-21D-1855-08	1305334	62276213	40255179	1768	40762											
TLN2	83660	broad.mit.edu	37	chr15	63031764	63031764	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggtgtggaggtggttgTctggagttgaccttagcctc	18	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63031764	G	G	63031764	1	3	24	0	1	0	0	0	0	0	0	0	16071	1682	58	5		5	TLN2	15	63031764	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	755551	63031764	39499628	1769	40763											
HERC1	8925	broad.mit.edu	37	chr15	64045285	64045285	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccatgaccaagtttacCtataaaaacaaacacattaa	2	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64045285	A	A	64045285	5	1	24	1	0	0	0	0	0	0	1	0	7124	695	24	2	13095	2	HERC1	15	64045285	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	1013521	64045285	38486107	1770	40764											
CLPX	10845	broad.mit.edu	37	chr15	65449190	65449190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactgcttacttgctgaaCgccttctccacctacatccc	4	17	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65449190	A	A	65449190	3	1	24	1	0	0	0	0	1	0	0	0	3588	536	19	3	787	3	CLPX	15	65449190	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1403905	65449190	37082202	1771	40765											
RPL4	6124	broad.mit.edu	37	chr15	66795622	66795622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcatgtggttcagaaacacGgaccaatgaagtggaatttc	10	7	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66795622	A	A	66795622	1	1	24	0	1	0	0	0	0	0	0	0	13706	1131	39	4		4	RPL4	15	66795622	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1346432	66795622	35735770	1772	40766											
IQCH	64799	broad.mit.edu	37	chr15	67692483	67692483	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgagtcagctgataactgAtcacctgcaaatacagcgtt	9	10	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67692483	G	G	67692483	3	3	24	1	0	0	0	0	1	0	0	0	7881	333	12	5	2119	5	IQCH	15	67692483	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	896861	67692483	34838909	1773	40767											
MAP2K5	5607	broad.mit.edu	37	chr15	68061872	68061872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcatccttcacatgggtgGgtggggaatataaagaaaga	12	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68061872	T	T	68061872	1	4	24	0	1	0	0	0	0	0	0	0	9332	1247	43	2		2	MAP2K5	15	68061872	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	369389	68061872	34469520	1774	40768											
NEO1	4756	broad.mit.edu	37	chr15	73454192	73454192	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcaattctttatataattGacgaacttggcttccacttt	5	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73454192	T	T	73454192	1	4	24	0	1	0	0	0	0	0	0	0	10431	1305	45	3		3	NEO1	15	73454192	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5392320	73454192	29077200	1775	40769											
CD276	80381	broad.mit.edu	37	chr15	73995330	73995330	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcctgcgggtggtgctGggtgcaaatggcacctacag	15	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73995330	A	A	73995330	2	1	24	1	0	0	0	0	0	0	0	1	3022	1335	47	4		4	CD276	15	73995330	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	541138	73995330	28536062	1776	40770											
PML	5371	broad.mit.edu	37	chr15	74315475	74315475	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggaggctgtggacgcGcggtaccagcgcgactacga	16	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74315475	T	T	74315475	2	4	24	1	0	0	0	0	0	0	0	1	12230	1074	38	3		3	PML	15	74315475	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	320145	74315475	28215917	1777	40771											
PML	5371	broad.mit.edu	37	chr15	74327366	74327366	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggtggcctcgtgggtaGtgacccttctgtccctagag	13	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74327366	A	A	74327366	1	1	24	0	1	0	0	0	0	0	0	0	12230	1044	36	4		4	PML	15	74327366	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	11891	74327366	28204026	1778	40772											
SCAMP5	192683	broad.mit.edu	37	chr15	75310399	75310399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtgctaagctgtctagCctatggggcctgagtgatgg	15	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75310399	A	A	75310399	1	1	24	0	1	0	0	0	0	0	0	0	13986	754	26	3		3	SCAMP5	15	75310399	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	983033	75310399	27220993	1779	40773											
C15orf39	56905	broad.mit.edu	37	chr15	75500971	75500971	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcggctgccacccgcttCtgtggaccatgtgctgcagg	12	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75500971	T	T	75500971	3	4	24	1	0	0	0	0	1	0	0	0	1806	913	32	4	2584	4	C15orf39	15	75500971	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	190572	75500971	27030421	1780	40774											
CIB2	10518	broad.mit.edu	37	chr15	78398247	78398247	+	Frame_Shift_Del	DEL	C	-	-													cagcgtcagctccaggtcctCcttgcagatgaagttgtcag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78398247	-	-	78398247	7	5	24	1	0	1	0	1	0	0	0	0	3452	864	30	0	195	0	CIB2	15	78398247	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	2897276	78398247	24133145	1781	40775											
PSMA4	5685	broad.mit.edu	37	chr15	78838104	78838104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcattggaaataatagcGctgtgagtatttttgttgtg	11	4	0	1	rs147172987		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78838104	T	T	78838104	3	4	24	1	0	0	0	0	1	0	0	0	12775	1087	38	3	527	3	PSMA4	15	78838104	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	439857	78838104	23693288	1782	40776											
CHRNB4	1143	broad.mit.edu	37	chr15	78917515	78917515	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggcccctcagaagctgcaTgggtctggaagaggggcggt	18	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78917515	A	A	78917515	3	1	24	1	0	0	0	0	1	0	0	0	3424	1464	51	5	43	5	CHRNB4	15	78917515	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	79411	78917515	23613877	1783	40777											
ARNT2	9915	broad.mit.edu	37	chr15	80750291	80750291	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggacttcgatgatgaagaTggtgaaggccccagtaaatt	12	6	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80750291	C	C	80750291	2	2	24	1	0	0	0	0	0	0	0	1	970	1461	51	5		5	ARNT2	15	80750291	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	1832776	80750291	21781101	1784	40778											
ARNT2	9915	broad.mit.edu	37	chr15	80884026	80884026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactcccaccagcagcccgGtcagactgaagtgttccagg	11	15	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80884026	T	T	80884026	3	4	24	1	0	0	0	0	1	0	0	0	970	1261	44	3	2106	3	ARNT2	15	80884026	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	133735	80884026	21647366	1785	40779											
IL16	3603	broad.mit.edu	37	chr15	81578276	81578276	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctggctgggtttgtaCctgaattcccaagaatccct	10	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81578276	A	A	81578276	1	1	24	0	1	0	0	0	0	0	0	0	7703	522	18	3		3	IL16	15	81578276	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	694250	81578276	20953116	1786	40780											
TMC3	342125	broad.mit.edu	37	chr15	81630234	81630234	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgctgagctttagagaccGtgcgatgctctggagataat	13	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81630234	C	C	81630234	3	2	24	1	0	0	0	0	1	0	0	0	16109	1144	40	4	1205	4	TMC3	15	81630234	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	51958	81630234	20901158	1787	40781											
AP3B2	8120	broad.mit.edu	37	chr15	83331855	83331855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtccctgccccagcccGgtcccctcctccatcccact	6	22	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83331855	T	T	83331855	1	4	24	0	1	0	0	0	0	0	0	0	747	1131	39	1		1	AP3B2	15	83331855	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1701621	83331855	19199537	1788	40782											
AP3B2	8120	broad.mit.edu	37	chr15	83332643	83332643	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctactgctggaatcgctGccctcatcagaggatgacgc	12	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83332643	T	T	83332643	2	4	24	1	0	0	0	0	0	0	0	1	747	1306	46	3		3	AP3B2	15	83332643	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	788	83332643	19198749	1789	40783											
BTBD1	53339	broad.mit.edu	37	chr15	83687105	83687105	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataaaattttatgctgtcaTttagagaaaaatgaagtttt	6	2	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83687105	C	C	83687105	1	2	24	0	1	0	0	0	0	0	0	0	1546	1508	52	5		5	BTBD1	15	83687105	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	354462	83687105	18844287	1790	40784											
TM6SF1	53346	broad.mit.edu	37	chr15	83788527	83788527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagaggcaaatacacaagCaggtatactggacatgaata	9	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83788527	A	A	83788527	1	1	24	0	1	0	0	0	0	0	0	0	16095	725	25	3		3	TM6SF1	15	83788527	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	101422	83788527	18742865	1791	40785											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84324457	84324457	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggccagagctggttggtAatgaactctttcctcgtttg	14	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84324457	C	C	84324457	1	2	24	0	1	0	0	0	0	0	0	0	276	377	13	5		5	ADAMTSL3	15	84324457	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	535930	84324457	18206935	1792	40786											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84651759	84651759	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatatatcagctggtggccGaattagccaaggcacagcca	11	10	1	1	rs147808860		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84651759	T	T	84651759	4	4	24	1	0	0	0	0	0	1	0	0	276	1059	37	3	3457	3	ADAMTSL3	15	84651759	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	327302	84651759	17879633	1793	40787											
ZNF592	9640	broad.mit.edu	37	chr15	85345528	85345528	+	Frame_Shift_Del	DEL	G	-	-													ccagaggcgaggagattgctGggcccggcccctgaggacga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85345528	-	-	85345528	7	5	24	1	0	1	0	1	0	0	0	0	18149	1335	47	0	3738	0	ZNF592	15	85345528	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	693769	85345528	17185864	1794	40788											
NTRK3	4916	broad.mit.edu	37	chr15	88474543	88474543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaaaaggacaaagtgaGggctatcccgaatattgaga	12	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88474543	T	T	88474543	1	4	24	0	1	0	0	0	0	0	0	0	10803	1015	35	2		2	NTRK3	15	88474543	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3129015	88474543	14056849	1795	40789											
FANCI	55215	broad.mit.edu	37	chr15	89807159	89807159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctctgactgcagaagagGtggaatttgtggtggaaaaa	13	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89807159	T	T	89807159	3	4	24	1	0	0	0	0	1	0	0	0	5726	1261	44	3	597	3	FANCI	15	89807159	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1332616	89807159	12724233	1796	40790											
RHCG	51458	broad.mit.edu	37	chr15	90023572	90023572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgcgtcggtagaggatcCgggtcactgtgagcccaaag	16	9	1	2	rs149510924	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90023572	A	A	90023572	3	1	24	1	0	0	0	0	1	0	0	0	13435	652	23	1	877	1	RHCG	15	90023572	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	216413	90023572	12507820	1797	40791											
BLM	641	broad.mit.edu	37	chr15	91358332	91358332	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttgtcacatttcagGgggtctgccacatgtagaaa	9	8	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91358332	T	T	91358332	2	4	24	1	0	0	0	0	0	0	0	1	1451	1246	43	2		2	BLM	15	91358332	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1334760	91358332	11173060	1798	40792											
FURIN	5045	broad.mit.edu	37	chr15	91423351	91423351	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaaacggctcgaggtgcgGaagaccgtgaccgcgtgcct	17	11	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91423351	T	T	91423351	2	4	24	1	0	0	0	0	0	0	0	1	6159	1161	41	3		3	FURIN	15	91423351	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	65019	91423351	11108041	1799	40793											
PRC1	9055	broad.mit.edu	37	chr15	91524331	91524331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctagccctctagcctccCgcaaagaaatgtctggagta	10	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91524331	A	A	91524331	1	1	24	0	1	0	0	0	0	0	0	0	12552	667	23	1		1	PRC1	15	91524331	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	100980	91524331	11007061	1800	40794											
CHD2	1106	broad.mit.edu	37	chr15	93487673	93487673	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtttctcctgaagatgtaGaatatttcaattgccaacag	7	7	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93487673	C	C	93487673	3	2	24	1	0	0	0	0	1	0	0	0	3356	943	33	4	1115	4	CHD2	15	93487673	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1963342	93487673	9043719	1801	40795											
CHD2	1106	broad.mit.edu	37	chr15	93499635	93499635	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataattaacacttgaaagcActtgtgggttcccttctgac	8	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93499635	T	T	93499635	1	4	24	0	1	0	0	0	0	0	0	0	3356	174	6	5		5	CHD2	15	93499635	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	11962	93499635	9031757	1802	40796											
IGF1R	3480	broad.mit.edu	37	chr15	99442824	99442824	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctaaaaaaccttcgcctCatcctaggagaggagcagct	8	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99442824	T	T	99442824	2	4	24	1	0	0	0	0	0	0	0	1	7641	813	29	4		4	IGF1R	15	99442824	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	5943189	99442824	3088568	1803	40797											
SYNM	23336	broad.mit.edu	37	chr15	99654000	99654000	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaaactggtctagggaccGtagcctttgtggagtcactg	14	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99654000	C	C	99654000	1	2	24	0	1	0	0	0	0	0	0	0	15574	1160	40	4		4	SYNM	15	99654000	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	211176	99654000	2877392	1804	40798											
MEF2A	4205	broad.mit.edu	37	chr15	100173355	100173355	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaatacaaatcacacgcAtaatggatgaaaggaaccga	8	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100173355	G	G	100173355	3	3	24	1	0	0	0	0	1	0	0	0	9548	217	8	5	33	5	MEF2A	15	100173355	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	519355	100173355	2358037	1805	40799											
ADAMTS17	170691	broad.mit.edu	37	chr15	100594283	100594283	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcaagttgaagaccaaAgaatcaaggggctgggggta	15	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100594283	C	C	100594283	1	2	24	0	1	0	0	0	0	0	0	0	262	87	3	5		5	ADAMTS17	15	100594283	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	420928	100594283	1937109	1806	40800											
ADAMTS17	170691	broad.mit.edu	37	chr15	100739682	100739682	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacgtgggaggccctggtctCaccgggcaagtccgcacggt	15	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100739682	G	G	100739682	1	3	24	0	1	0	0	0	0	0	0	0	262	841	29	4		4	ADAMTS17	15	100739682	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	145399	100739682	1791710	1807	40801											
PCSK6	5046	broad.mit.edu	37	chr15	101972301	101972301	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgttgctggagccatTtcacctaccagaagaaatgc	8	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101972301	C	C	101972301	3	2	24	1	0	0	0	0	1	0	0	0	11698	1841	64	5	3061	5	PCSK6	15	101972301	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1232619	101972301	559091	1808	40802											
OR4F6	390648	broad.mit.edu	37	chr15	102346731	102346731	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatcacatcttgataaatTccttgccatctttgatgcag	5	11	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102346731	G	G	102346731	3	3	24	1	0	0	0	0	1	0	0	0	11160	1783	62	5	811	5	OR4F6	15	102346731	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	374430	102346731	184661	1809	40803											
IFT140	9742	broad.mit.edu	37	chr16	1573703	1573703	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttggagaagtggccagccTgcggatacggtgggctctga	16	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1573703	A	A	1573703	5	1	24	1	0	0	0	0	0	0	1	0	7626	1594	55	5	1143	5	IFT140	16	1573703	Splice_Site	SNP	T	TCGA-05-4427-01A-21D-1855-08		1573703	88781050	1810	40804											
IFT140	9742	broad.mit.edu	37	chr16	1608043	1608043	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgtcgcagtcctccagCcccacaaagtctcgcagggg	11	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1608043	A	A	1608043	2	1	24	1	0	0	0	0	0	0	0	1	7626	726	26	3		3	IFT140	16	1608043	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	34340	1608043	88746710	1811	40805											
MEFV	4210	broad.mit.edu	37	chr16	3304165	3304165	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacacaatttaccggtgacCgaatgttctggatttccagg	10	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3304165	A	A	3304165	2	1	24	1	0	0	0	0	0	0	0	1	9552	639	23	1		1	MEFV	16	3304165	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1696122	3304165	87050588	1812	40806											
UBN1	29855	broad.mit.edu	37	chr16	4927035	4927035	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccttcagcgctgactcctCtgccaaagcaggggtctcca	9	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4927035	T	T	4927035	3	4	24	1	0	0	0	0	1	0	0	0	17018	913	32	4	3246	4	UBN1	16	4927035	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1622870	4927035	85427718	1813	40807											
MKL2	57496	broad.mit.edu	37	chr16	14294611	14294611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggttgggacttgttgcctGtccagtgctgtgggtgatac	15	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14294611	T	T	14294611	1	4	24	0	1	0	0	0	0	0	0	0	9695	1392	48	3		3	MKL2	16	14294611	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	9367576	14294611	76060142	1814	40808											
PARN	5073	broad.mit.edu	37	chr16	14680212	14680212	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatctctttaaactcacTtaagtcctaaagaacaagag	5	9	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14680212	G	G	14680212	3	3	24	1	0	0	0	0	1	0	0	0	11547	1609	56	5	1038	5	PARN	16	14680212	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	385601	14680212	75674541	1815	40809											
PDXDC1	23042	broad.mit.edu	37	chr16	15222118	15222118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttccacacgctacccaGgctgtgcggggtggcgatcc	13	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15222118	T	T	15222118	1	4	24	0	1	0	0	0	0	0	0	0	11790	1015	35	2		2	PDXDC1	16	15222118	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	541906	15222118	75132635	1816	40810											
ABCC1	4363	broad.mit.edu	37	chr16	16130471	16130471	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactaggaagtaagtgtgaGtttccttgtcctccaggatg	12	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16130471	A	A	16130471	1	1	24	0	1	0	0	0	0	0	0	0	49	1044	36	4		4	ABCC1	16	16130471	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	908353	16130471	74224282	1817	40811											
ARL6IP1	23204	broad.mit.edu	37	chr16	18804768	18804768	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattacttttttttttttttTttgagacaaagtttcacttt	3	4	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18804768	C	C	18804768	1	2	24	0	1	0	0	0	0	0	0	0	946	1856	64	5		5	ARL6IP1	16	18804768	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2674297	18804768	71549985	1818	40812											
SMG1	23049	broad.mit.edu	37	chr16	18853097	18853097	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgcattattctctcatcCagatgtaaatcctccagtcc	4	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18853097	T	T	18853097	2	4	24	1	0	0	0	0	0	0	0	1	14909	581	21	4		4	SMG1	16	18853097	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	48329	18853097	71501656	1819	40813											
GP2	2813	broad.mit.edu	37	chr16	20337593	20337593	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacctgagccaccttctcTgcacttctatcctcacttgc	4	17	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20337593	C	C	20337593	1	2	24	0	1	0	0	0	0	0	0	0	6647	1595	55	5		5	GP2	16	20337593	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1484496	20337593	70017160	1820	40814											
PDILT	204474	broad.mit.edu	37	chr16	20370825	20370825	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaccctttcctcatcataGgcacctccttttcctcagct	4	16	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20370825	A	A	20370825	3	1	24	1	0	0	0	0	1	0	0	0	11768	1000	35	4	187	4	PDILT	16	20370825	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	33232	20370825	69983928	1821	40815											
ACSM2B	348158	broad.mit.edu	37	chr16	20548512	20548512	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcatatcatcatagtaaGgccaagggcccaaagggaaa	9	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20548512	T	T	20548512	1	4	24	0	1	0	0	0	0	0	0	0	184	1015	35	2		2	ACSM2B	16	20548512	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	177687	20548512	69806241	1822	40816											
ACSM2B	348158	broad.mit.edu	37	chr16	20548589	20548589	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctagacgcctcactgcgcAcgggcttttccggacatctt	9	15	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20548589	T	T	20548589	2	4	24	1	0	0	0	0	0	0	0	1	184	146	6	5		5	ACSM2B	16	20548589	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	77	20548589	69806164	1823	40817											
ACSM1	116285	broad.mit.edu	37	chr16	20648257	20648257	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatgcatgggacaccagtgTggatgaaataacagaggaaa	12	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20648257	A	A	20648257	1	1	24	0	1	0	0	0	0	0	0	0	182	1711	59	5		5	ACSM1	16	20648257	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	99668	20648257	69706496	1824	40818											
ACSM1	116285	broad.mit.edu	37	chr16	20702562	20702562	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctcaagtcaccacctgcCttgggaagagatggctaata	10	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20702562	A	A	20702562	1	1	24	1	0	0	0	0	0	0	0	0	182	696	24	2		2	ACSM1	16	20702562	Translation_Start_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	54305	20702562	69652191	1825	40819											
DNAH3	55567	broad.mit.edu	37	chr16	21042353	21042353	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggaaaagtcatatcaGggtcaatacttaccttttta	6	8	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21042353	T	T	21042353	1	4	24	0	1	0	0	0	0	0	0	0	4643	1015	35	2		2	DNAH3	16	21042353	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	339791	21042353	69312400	1826	40820											
PDZD9	255762	broad.mit.edu	37	chr16	22010352	22010352	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccctctgaaaaaactagtTgagaaagaagaaaagaagct	8	6	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22010352	G	G	22010352	1	3	24	0	1	0	0	0	0	0	0	0	11800	1827	63	5		5	PDZD9	16	22010352	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	967999	22010352	68344401	1827	40821											
VWA3A	146177	broad.mit.edu	37	chr16	22144268	22144268	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctgtggcggctgcgacctCcagctgaacgtgtgtctctt	13	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22144268	A	A	22144268	2	1	24	1	0	0	0	0	0	0	0	1	17367	842	30	3		3	VWA3A	16	22144268	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	133916	22144268	68210485	1828	40822											
PLK1	5347	broad.mit.edu	37	chr16	23691660	23691660	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaggaaggagacaaccCacaagtcagtatcttgccta	10	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23691660	T	T	23691660	1	4	24	0	1	0	0	0	0	0	0	0	12189	609	21	4		4	PLK1	16	23691660	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1547392	23691660	66663093	1829	40823											
HS3ST4	9951	broad.mit.edu	37	chr16	26044029	26044029	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtcttgggctctggctttGgaggagcaggtttagcagac	15	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26044029	A	A	26044029	1	1	24	0	1	0	0	0	0	0	0	0	7434	1363	47	4		4	HS3ST4	16	26044029	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2352369	26044029	64310724	1830	40824											
GTF3C1	2975	broad.mit.edu	37	chr16	27506661	27506661	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacgcctgccctgcctgactCctgctttatcgttctccgtt	8	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27506661	A	A	27506661	4	1	24	1	0	0	0	0	0	1	0	0	6937	864	30	3	3918	3	GTF3C1	16	27506661	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1462632	27506661	62848092	1831	40825											
KIAA0556	23247	broad.mit.edu	37	chr16	27788219	27788219	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctctgtttccaaacatgCctgttttaattagtgccgct	7	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27788219	T	T	27788219	1	4	24	0	1	0	0	0	0	0	0	0	8253	754	26	4		4	KIAA0556	16	27788219	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	281558	27788219	62566534	1832	40826											
SH2B1	25970	broad.mit.edu	37	chr16	28883539	28883539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttccagggggagccagaGggcggtgagggggaccagcc	20	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28883539	T	T	28883539	3	4	24	1	0	0	0	0	1	0	0	0	14340	991	35	2	1564	2	SH2B1	16	28883539	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1095320	28883539	61471214	1833	40827											
SETD1A	9739	broad.mit.edu	37	chr16	30978811	30978811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaggccccatcttttccCcatcccccaggtaaagcgga	7	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30978811	T	T	30978811	1	4	24	0	1	0	0	0	0	0	0	0	14243	638	22	4		4	SETD1A	16	30978811	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2095272	30978811	59375942	1834	40828											
MYST1	84148	broad.mit.edu	37	chr16	31131498	31131498	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgatgaccctagcctttttCcatcacagattctgctgaag	7	12	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31131498	A	A	31131498	1	1	24	0	1	0	0	0	0	0	0	0	10196	870	30	3		3	MYST1	16	31131498	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	152687	31131498	59223255	1835	40829											
ITGAX	3687	broad.mit.edu	37	chr16	31371152	31371152	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagagacccagcacccagGtgtgcctttgggggagggag	16	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31371152	T	T	31371152	5	4	24	1	0	0	0	0	0	0	1	0	7959	1275	44	3	584	3	ITGAX	16	31371152	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	239654	31371152	58983601	1836	40830											
ITGAX	3687	broad.mit.edu	37	chr16	31391993	31391993	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctggaaagagggcccctAgggctacatctgtggtgctg	16	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31391993	T	T	31391993	1	4	24	0	1	0	0	0	0	0	0	0	7959	435	15	5		5	ITGAX	16	31391993	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	20841	31391993	58962760	1837	40831											
MYLK3	91807	broad.mit.edu	37	chr16	46743600	46743600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgtgaaatcaaagagCagttaagacttttagttgga	11	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46743600	A	A	46743600	1	1	24	0	1	0	0	0	0	0	0	0	10152	725	25	3		3	MYLK3	16	46743600	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	15351607	46743600	43611153	1838	40832											
ABCC12	94160	broad.mit.edu	37	chr16	48121967	48121967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggctggctccaccagacGaaacaaagccattcctaacg	8	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48121967	T	T	48121967	3	4	24	1	0	0	0	0	1	0	0	0	52	1058	37	3	594	3	ABCC12	16	48121967	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1378367	48121967	42232786	1839	40833											
ABCC11	85320	broad.mit.edu	37	chr16	48242392	48242392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccccgtgttgccgcagaCccctaacatcatcccctgca	6	19	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48242392	A	A	48242392	3	1	24	1	0	0	0	0	1	0	0	0	51	507	18	3	2600	3	ABCC11	16	48242392	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	120425	48242392	42112361	1840	40834											
ABCC11	85320	broad.mit.edu	37	chr16	48258303	48258303	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgaagctttttcaatccCtcgccttgagacttcttctt	5	13	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48258303	T	T	48258303	3	4	24	1	0	0	0	0	1	0	0	0	51	681	24	4	3819	4	ABCC11	16	48258303	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	15911	48258303	42096450	1841	40835											
MMP2	4313	broad.mit.edu	37	chr16	55539339	55539339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggaagcatcaaatccgaCtggctaggctgctgagctgg	13	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55539339	A	A	55539339	3	1	24	1	0	0	0	0	1	0	0	0	9751	564	20	3	2025	3	MMP2	16	55539339	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7281036	55539339	34815414	1842	40836											
CAPNS2	84290	broad.mit.edu	37	chr16	55600831	55600831	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtgaggctgcagcagctCagtatactccagaaccgcct	10	13	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55600831	A	A	55600831	3	1	24	1	0	0	0	0	1	0	0	0	2660	827	29	3	165	3	CAPNS2	16	55600831	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	61492	55600831	34753922	1843	40837											
CES7	221223	broad.mit.edu	37	chr16	55903522	55903522	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatcatttggagagactcaCgtgaagaaaccaaatattcc	7	10	2	3	rs144674577		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55903522	G	G	55903522	5	3	24	1	0	0	0	0	0	0	1	0	3302	550	19	4	1215	4	CES7	16	55903522	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	302691	55903522	34451231	1844	40838											
GNAO1	2775	broad.mit.edu	37	chr16	56226147	56226147	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcagggaaggggccacCatgggatgtactctgagcgc	17	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56226147	A	A	56226147	1	1	24	0	1	0	0	0	0	0	0	0	6572	609	21	2		2	GNAO1	16	56226147	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	322625	56226147	34128606	1845	40839											
GNAO1	2775	broad.mit.edu	37	chr16	56377894	56377894	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccggcacccttgccctGcctggcctgccgccccccct	9	24	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56377894	T	T	56377894	1	4	24	0	1	0	0	0	0	0	0	0	6572	1334	46	3		3	GNAO1	16	56377894	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	151747	56377894	33976859	1846	40840											
NUP93	9688	broad.mit.edu	37	chr16	56857486	56857486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcactgagcttaagcctaGccgtcacagacagatgacat	9	12	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56857486	T	T	56857486	1	4	24	0	1	0	0	0	0	0	0	0	10867	986	34	3		3	NUP93	16	56857486	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	479592	56857486	33497267	1847	40841											
GPR114	221188	broad.mit.edu	37	chr16	57596920	57596920	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgggtggggaggccctGccctcccaggctgtctacag	17	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57596920	A	A	57596920	1	1	24	0	1	0	0	0	0	0	0	0	6696	1334	46	4		4	GPR114	16	57596920	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	739434	57596920	32757833	1848	40842											
CDH8	1006	broad.mit.edu	37	chr16	61761189	61761189	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcaactcaactttctcttGaaagcatgtgtgtctgtttc	8	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61761189	T	T	61761189	1	4	24	0	1	0	0	0	0	0	0	0	3146	1305	45	3		3	CDH8	16	61761189	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4164269	61761189	28593564	1849	40843											
CDH8	1006	broad.mit.edu	37	chr16	61823218	61823218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaattgaactcagtcacaCaaggaagaaatgaacaaatc	6	7	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61823218	A	A	61823218	1	1	24	0	1	0	0	0	0	0	0	0	3146	493	17	3		3	CDH8	16	61823218	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	62029	61823218	28531535	1850	40844											
LRRC36	55282	broad.mit.edu	37	chr16	67384227	67384227	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgattataaaatgattaAaacatcagttatctcagctg	6	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67384227	G	G	67384227	1	3	24	0	1	0	0	0	0	0	0	0	9077	29	1	5		5	LRRC36	16	67384227	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	5561009	67384227	22970526	1851	40845											
ATP6V0D1	9114	broad.mit.edu	37	chr16	67487352	67487352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgacagctgacacaggcaCgaaggcagctagcctaagcc	11	13	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67487352	A	A	67487352	1	1	24	0	1	0	0	0	0	0	0	0	1177	551	19	3		3	ATP6V0D1	16	67487352	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	103125	67487352	22867401	1852	40846											
NFATC3	4775	broad.mit.edu	37	chr16	68156554	68156554	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgatgagaattggctgagCcccaggccagcctcaggacc	12	13	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68156554	T	T	68156554	2	4	24	1	0	0	0	0	0	0	0	1	10459	738	26	4		4	NFATC3	16	68156554	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	669202	68156554	22198199	1853	40847											
HYDIN	54768	broad.mit.edu	37	chr16	70884249	70884249	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctgttttcctggtctctCtggcatttgaagcagaaaga	9	8	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70884249	G	G	70884249	1	3	24	0	1	0	0	0	0	0	0	0	7537	928	32	4		4	HYDIN	16	70884249	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2727695	70884249	19470504	1854	40848											
HYDIN	54768	broad.mit.edu	37	chr16	70955161	70955161	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatgcgtcaaacagttttTtacggggtagtaaattgcat	10	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70955161	C	C	70955161	1	2	24	0	1	0	0	0	0	0	0	0	7537	1856	64	5		5	HYDIN	16	70955161	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	70912	70955161	19399592	1855	40849											
GLG1	2734	broad.mit.edu	37	chr16	74537693	74537693	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagtgttccatgctcgtatCaaacaatatttatcaaagag	6	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74537693	T	T	74537693	1	4	24	0	1	0	0	0	0	0	0	0	6500	841	29	4		4	GLG1	16	74537693	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3582532	74537693	15817060	1856	40850											
ADAMTS18	170692	broad.mit.edu	37	chr16	77354874	77354874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccatcactagtgtgtcCagtgaactagtaaaaggctc	9	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77354874	A	A	77354874	1	1	24	0	1	0	0	0	0	0	0	0	263	609	21	2		2	ADAMTS18	16	77354874	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2817181	77354874	12999879	1857	40851											
ADAMTS18	170692	broad.mit.edu	37	chr16	77356301	77356301	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttccatctttcactttgcCggacattgcaaaaaaaaatt	5	9	2	0	rs142855321		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77356301	T	T	77356301	3	4	24	1	0	0	0	0	1	0	0	0	263	652	23	4	1610	4	ADAMTS18	16	77356301	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1427	77356301	12998452	1858	40852											
PKD1L2	114780	broad.mit.edu	37	chr16	81208465	81208465	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagctgtggggattttctCtgacacggcagcctggaatg	14	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81208465	A	A	81208465	4	1	24	1	0	0	0	0	0	1	0	0	12060	922	32	3	4922	3	PKD1L2	16	81208465	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3852164	81208465	9146288	1859	40853											
CDH13	1012	broad.mit.edu	37	chr16	83250957	83250957	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttctgactaggtagtcgAtagtgacaggccagaaaggt	12	6	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83250957	T	T	83250957	3	4	24	1	0	0	0	0	1	0	0	0	3129	333	12	5	509	5	CDH13	16	83250957	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	2042492	83250957	7103796	1860	40854											
LRRC50	123872	broad.mit.edu	37	chr16	84188285	84188285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctggaggcccaaactgaGttgcgttgcctcttcttgca	10	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84188285	T	T	84188285	3	4	24	1	0	0	0	0	1	0	0	0	9096	1020	36	3	470	3	LRRC50	16	84188285	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	937328	84188285	6166468	1861	40855											
GAS8	2622	broad.mit.edu	37	chr16	90104182	90104182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccagtgcacaaaagccCgtttgaaagtcagggagaaa	10	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90104182	A	A	90104182	3	1	24	1	0	0	0	0	1	0	0	0	6313	652	23	1	967	1	GAS8	16	90104182	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	5915897	90104182	250571	1862	40856											
OR3A1	4994	broad.mit.edu	37	chr17	3195448	3195448	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagccaccaacatcctctgGactgtctgactcatgcgggt	10	14	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3195448	T	T	3195448	2	4	24	1	0	0	0	0	0	0	0	1	11131	1161	41	3		3	OR3A1	17	3195448	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08		3195448	77999762	1863	40857											
ITGAE	3682	broad.mit.edu	37	chr17	3651109	3651109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagcaccaggacctcagaCcaacacccacccaccccccg	5	22	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3651109	A	A	3651109	1	1	24	0	1	0	0	0	0	0	0	0	7955	522	18	3		3	ITGAE	17	3651109	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	455661	3651109	77544101	1864	40858											
ATP2A3	489	broad.mit.edu	37	chr17	3840843	3840843	+	Missense_Mutation	SNP	C	A	A													tgacagcaccatctctgccgCcgacttggccacggccgtgc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3840843	A	A	3840843	3	1	24	1	0	0	0	0	1	0	0	0	1142	739	26	3	1050	3	ATP2A3	17	3840843	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	189734	3840843	77354367	1865	40859	217	2									
ATP2A3	489	broad.mit.edu	37	chr17	3840845	3840845	+	Missense_Mutation	SNP	G	A	A													acagcaccatctctgccgccGacttggccacggccgtgcct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3840845	A	A	3840845	3	1	24	1	0	0	0	0	1	0	0	0	1142	1059	37	4	1052	4	ATP2A3	17	3840845	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2	3840845	77354365	1866	40860	217	2									
ATP2A3	489	broad.mit.edu	37	chr17	3854535	3854536	+	Intron	DNP	CC	AA	AA													ataaaataaaaggaggaggcCccggcatacctgccacttct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	3854536	AA	AA	3854535	1	1	24	0	1	0	0	0	0	0	0	0	1142	638	22	2		2	ATP2A3	17	3854535	Intron	DNP	CC	TCGA-05-4427-01A-21D-1855-08	13690	3854535	77340675	1867	40861											
PLD2	5338	broad.mit.edu	37	chr17	4721279	4721279	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagaaatgaagcacatcGcattcaccattccctaggtc	7	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4721279	A	A	4721279	1	1	24	0	1	0	0	0	0	0	0	0	12141	1102	38	4		4	PLD2	17	4721279	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	866744	4721279	76473931	1868	40862											
PLD2	5338	broad.mit.edu	37	chr17	4726030	4726030	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacggtcagtccccccttGgctcggtctgagctcaccca	10	18	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4726030	T	T	4726030	3	4	24	1	0	0	0	0	1	0	0	0	12141	1339	47	2	2767	2	PLD2	17	4726030	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4751	4726030	76469180	1869	40863											
GPR172B	55065	broad.mit.edu	37	chr17	4937880	4937880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgggtcagcaccagacGgcccagcgtgggtgctgcca	16	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4937880	T	T	4937880	3	4	24	1	0	0	0	0	1	0	0	0	6735	1116	39	1	1340	1	GPR172B	17	4937880	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	211850	4937880	76257330	1870	40864											
ZNF232	7775	broad.mit.edu	37	chr17	5012905	5012905	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagttggctcaaggcctcCcggggaccaggagtctcctg	14	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5012905	A	A	5012905	2	1	24	1	0	0	0	0	0	0	0	1	17911	610	22	2		2	ZNF232	17	5012905	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	75025	5012905	76182305	1871	40865											
NLRP1	22861	broad.mit.edu	37	chr17	5463315	5463315	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgttcctaccaccgctgccCatgggggcctgcctttctct	10	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5463315	T	T	5463315	4	4	24	1	0	0	0	0	0	1	0	0	10566	595	21	4	3851	4	NLRP1	17	5463315	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	450410	5463315	75731895	1872	40866											
DVL2	1856	broad.mit.edu	37	chr17	7133956	7133956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagccagggctgctaacgCgcggcctggggaggatacag	17	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7133956	A	A	7133956	1	1	24	0	1	0	0	0	0	0	0	0	4876	783	27	3		3	DVL2	17	7133956	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1670641	7133956	74061254	1873	40867											
POLR2A	5430	broad.mit.edu	37	chr17	7405315	7405315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcatcaaggatgactacGggcctgagagccgtggcttt	12	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7405315	T	T	7405315	3	4	24	1	0	0	0	0	1	0	0	0	12309	1116	39	1	2504	1	POLR2A	17	7405315	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	271359	7405315	73789895	1874	40868											
TP53	7157	broad.mit.edu	37	chr17	7577097	7577097	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcttcctctgtgcgccggtCtctcccaggacaggcacaaa	9	16	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577097	T	T	7577097	3	4	24	1	0	0	0	0	1	0	0	0	16505	913	32	4	445	4	TP53	17	7577097	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	171782	7577097	73618113	1875	40869											
DNAH2	146754	broad.mit.edu	37	chr17	7736826	7736826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatcaagaggggcactgCtctactcatgagcctggaca	12	10	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7736826	A	A	7736826	3	1	24	1	0	0	0	0	1	0	0	0	4642	797	28	3	13597	3	DNAH2	17	7736826	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	159729	7736826	73458384	1876	40870											
CHD3	1107	broad.mit.edu	37	chr17	7797419	7797419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcctcactgacggccacGgggctatgggcagtatgttt	13	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7797419	T	T	7797419	1	4	24	0	1	0	0	0	0	0	0	0	3357	1131	39	1		1	CHD3	17	7797419	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	60593	7797419	73397791	1877	40871											
MYH13	8735	broad.mit.edu	37	chr17	10212800	10212800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagccgcctggcaggctgGggcccgtccaggtacgcaga	16	14	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10212800	T	T	10212800	1	4	24	0	1	0	0	0	0	0	0	0	10126	1247	43	2		2	MYH13	17	10212800	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2415381	10212800	70982410	1878	40872											
MYH8	4626	broad.mit.edu	37	chr17	10298590	10298590	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatcatttctgcttctaaTctctgcatccagcgtgctct	6	13	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10298590	A	A	10298590	3	1	24	1	0	0	0	0	1	0	0	0	10135	1435	50	5	1019	5	MYH8	17	10298590	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	85790	10298590	70896620	1879	40873											
MYH8	4626	broad.mit.edu	37	chr17	10304708	10304708	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcttggagagccttcttctCcttggacagttttgcaatgg	10	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10304708	G	G	10304708	3	3	24	1	0	0	0	0	1	0	0	0	10135	864	30	4	2889	4	MYH8	17	10304708	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	6118	10304708	70890502	1880	40874											
MYH4	4622	broad.mit.edu	37	chr17	10348311	10348311	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accctggcctccagtttctgGatctgcttcttcccaccctt	6	17	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10348311	C	C	10348311	3	2	24	1	0	0	0	0	1	0	0	0	10131	1164	41	4	387	4	MYH4	17	10348311	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	43603	10348311	70846899	1881	40875											
MYH4	4622	broad.mit.edu	37	chr17	10358081	10358081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccagggccagtgcttcaCattcatgaaagcacggatgt	10	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10358081	A	A	10358081	3	1	24	1	0	0	0	0	1	0	0	0	10131	478	17	3	3413	3	MYH4	17	10358081	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	9770	10358081	70837129	1882	40876											
MYH4	4622	broad.mit.edu	37	chr17	10359123	10359123	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtctggatatcagaaaTgtcttaccaggagttttagt	10	6	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10359123	C	C	10359123	1	2	24	0	1	0	0	0	0	0	0	0	10131	1479	51	5		5	MYH4	17	10359123	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1042	10359123	70836087	1883	40877											
MYH1	4619	broad.mit.edu	37	chr17	10399606	10399606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcagggcctcagcagcCatgcggttggcatggttcag	13	12	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10399606	A	A	10399606	3	1	24	1	0	0	0	0	1	0	0	0	10123	594	21	2	930	2	MYH1	17	10399606	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	40483	10399606	70795604	1884	40878											
MYH1	4619	broad.mit.edu	37	chr17	10416164	10416164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacagtgacaatcttctaGctatgaatttatttcttacc	5	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10416164	T	T	10416164	1	4	24	0	1	0	0	0	0	0	0	0	10123	986	34	3		3	MYH1	17	10416164	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	16558	10416164	70779046	1885	40879											
MYH3	4621	broad.mit.edu	37	chr17	10535202	10535202	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtttccgggccctctcCgtctgctccagagtagcccg	11	17	2	1	rs111358355		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10535202	A	A	10535202	2	1	24	1	0	0	0	0	0	0	0	1	10130	639	23	1		1	MYH3	17	10535202	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	119038	10535202	70660008	1886	40880											
MYH3	4621	broad.mit.edu	37	chr17	10544585	10544585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgagcaccacctagcgaGccagcaggtgtctcacctgg	11	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10544585	T	T	10544585	1	4	24	0	1	0	0	0	0	0	0	0	10130	986	34	3		3	MYH3	17	10544585	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	9383	10544585	70650625	1887	40881											
DNAH9	1770	broad.mit.edu	37	chr17	11513788	11513788	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagctaccaagtccaggtGgtactcaagagagagtcttc	12	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11513788	A	A	11513788	2	1	24	1	0	0	0	0	0	0	0	1	4648	1335	47	4		4	DNAH9	17	11513788	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	969203	11513788	69681422	1888	40882											
DNAH9	1770	broad.mit.edu	37	chr17	11593607	11593609	+	In_Frame_Del	DEL	TTC	-	-													tgatgtccaagtatgttgctTtcttcttggaggaggtgtcg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11593609	-	-	11593607	7	5	24	1	0	1	0	1	0	0	0	0	4648	1841	64	0	4546	0	DNAH9	17	11593607	In_Frame_Del	DEL	TTC	TCGA-05-4427-01A-21D-1855-08	79819	11593607	69601603	1889	40883											
DNAH9	1770	broad.mit.edu	37	chr17	11687034	11687034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgtatgaaccccacggCaggcagcttcaccatcaacc	7	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11687034	A	A	11687034	3	1	24	1	0	0	0	0	1	0	0	0	4648	710	25	3	7948	3	DNAH9	17	11687034	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	93427	11687034	69508176	1890	40884											
DNAH9	1770	broad.mit.edu	37	chr17	11725916	11725916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaacacagagggcattgaGgtgagagagaaaaggagaca	15	5	0	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11725916	T	T	11725916	3	4	24	1	0	0	0	0	1	0	0	0	4648	1014	35	2	9198	2	DNAH9	17	11725916	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	38882	11725916	69469294	1891	40885											
DNAH9	1770	broad.mit.edu	37	chr17	11737902	11737902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtgactagtccagtgcCcacagtccctccagtcacaa	8	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11737902	A	A	11737902	1	1	24	0	1	0	0	0	0	0	0	0	4648	638	22	2		2	DNAH9	17	11737902	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	11986	11737902	69457308	1892	40886											
DNAH9	1770	broad.mit.edu	37	chr17	11865225	11865225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatggagaacttacagaaTgccctgtacttcgatatggt	9	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11865225	A	A	11865225	3	1	24	1	0	0	0	0	1	0	0	0	4648	1461	51	5	13155	5	DNAH9	17	11865225	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	127323	11865225	69329985	1893	40887											
MAP2K4	6416	broad.mit.edu	37	chr17	12011071	12011071	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaggcaaggtgatatttaaGatgtataagaataacagata	9	2	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12011071	T	T	12011071	1	4	24	0	1	0	0	0	0	0	0	0	9331	957	33	3		3	MAP2K4	17	12011071	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	145846	12011071	69184139	1894	40888											
RICH2	9912	broad.mit.edu	37	chr17	12883544	12883544	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagagtcctcacaccctcCggaaaggtatggccctgctt	9	15	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12883544	T	T	12883544	3	4	24	1	0	0	0	0	1	0	0	0	13466	643	23	4	2007	4	RICH2	17	12883544	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	872473	12883544	68311666	1895	40889											
MFAP4	4239	broad.mit.edu	37	chr17	19287945	19287945	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctgaggagagagctgCgcagttctgcacaaagaggt	15	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19287945	T	T	19287945	3	4	24	1	0	0	0	0	1	0	0	0	9610	768	27	4	173	4	MFAP4	17	19287945	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	6404401	19287945	61907265	1896	40890											
CYTSB	92521	broad.mit.edu	37	chr17	20108353	20108353	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcgccagatgcttccgacTttgagcacattacagcagag	10	11	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20108353	G	G	20108353	3	3	24	1	0	0	0	0	1	0	0	0	4243	1609	56	5	1045	5	CYTSB	17	20108353	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	820408	20108353	61086857	1897	40891											
TMEM11	8834	broad.mit.edu	37	chr17	21101848	21101848	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaaactgccaggagatcCcatagagggtgcagcaggcc	14	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21101848	T	T	21101848	3	4	24	1	0	0	0	0	1	0	0	0	16149	623	22	4	214	4	TMEM11	17	21101848	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	993495	21101848	60093362	1898	40892											
MAP2K3	5606	broad.mit.edu	37	chr17	21208451	21208451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaccatggtactgtgggGggccagggcctgcccttggt	15	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21208451	T	T	21208451	1	4	24	0	1	0	0	0	0	0	0	0	9330	1247	43	2		2	MAP2K3	17	21208451	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	106603	21208451	59986759	1899	40893											
NOS2	4843	broad.mit.edu	37	chr17	26087293	26087293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattctcacttcactcccaCtagctatttaatagcattat	3	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26087293	A	A	26087293	1	1	24	0	1	0	0	0	0	0	0	0	10638	580	20	3		3	NOS2	17	26087293	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4878842	26087293	55107917	1900	40894											
NOS2	4843	broad.mit.edu	37	chr17	26094750	26094750	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctttgctgaggtccaaaggCtgtgagtcctgcacgagcct	12	12	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26094750	G	G	26094750	3	3	24	1	0	0	0	0	1	0	0	0	10638	796	28	4	1353	4	NOS2	17	26094750	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7457	26094750	55100460	1901	40895											
SPAG5	10615	broad.mit.edu	37	chr17	26912943	26912943	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctccctttctgctttgAggctctggagctttgccctc	8	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26912943	C	C	26912943	3	2	24	1	0	0	0	0	1	0	0	0	15097	304	11	5	1974	5	SPAG5	17	26912943	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	818193	26912943	54282267	1902	40896											
SEZ6	124925	broad.mit.edu	37	chr17	27285169	27285169	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggggcacctctgggggcaCagaggcacaagatgcaggcc	17	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27285169	T	T	27285169	1	4	24	0	1	0	0	0	0	0	0	0	14255	493	17	4		4	SEZ6	17	27285169	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	372226	27285169	53910041	1903	40897											
PIPOX	51268	broad.mit.edu	37	chr17	27381758	27381758	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatgccagtgcagattagGggaagctgctctaactttcc	11	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27381758	A	A	27381758	1	1	24	0	1	0	0	0	0	0	0	0	12038	1247	43	4		4	PIPOX	17	27381758	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	96589	27381758	53813452	1904	40898											
ATAD5	79915	broad.mit.edu	37	chr17	29157988	29157988	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatagaaaagtactacaTgcgcctgggcaaagacttcc	8	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29157988	C	C	29157988	1	2	24	0	1	0	0	0	0	0	0	0	1080	1479	51	5		5	ATAD5	17	29157988	5'Flank	SNP	T	TCGA-05-4427-01A-21D-1855-08	1776230	29157988	52037222	1905	40899											
LRRC37B	114659	broad.mit.edu	37	chr17	30354867	30354867	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctccagtatttgtaagttAgttaatcatatttttgagtt	6	5	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30354867	T	T	30354867	1	4	24	0	1	0	0	0	0	0	0	0	9081	435	15	5		5	LRRC37B	17	30354867	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1196879	30354867	50840343	1906	40900											
RHOT1	55288	broad.mit.edu	37	chr17	30551723	30551723	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagttttgggctttgctAtgtacaaagcattattgaaa	9	5	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30551723	G	G	30551723	3	3	24	1	0	0	0	0	1	0	0	0	13452	449	16	5	2129	5	RHOT1	17	30551723	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	196856	30551723	50643487	1907	40901											
C17orf75	64149	broad.mit.edu	37	chr17	30665158	30665158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagctttttggaggttggtAgtaatattcttccacctgcc	9	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30665158	G	G	30665158	1	3	24	0	1	0	0	0	0	0	0	0	1897	435	15	5		5	C17orf75	17	30665158	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	113435	30665158	50530052	1908	40902											
PSMD11	5717	broad.mit.edu	37	chr17	30807240	30807240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacagtcacacaggcaagGgggctggtggtggtgatgag	18	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30807240	T	T	30807240	1	4	24	0	1	0	0	0	0	0	0	0	12800	1247	43	2		2	PSMD11	17	30807240	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	142082	30807240	50387970	1909	40903											
MYO1D	4642	broad.mit.edu	37	chr17	31099937	31099937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccactttcttagggaaCtgtcaggcctctgagcccaa	11	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31099937	A	A	31099937	1	1	24	0	1	0	0	0	0	0	0	0	10165	580	20	3		3	MYO1D	17	31099937	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	292697	31099937	50095273	1910	40904											
ACCN1	40	broad.mit.edu	37	chr17	31344538	31344538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatggagagaggcaccgcCttccctctactatgattctg	10	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31344538	A	A	31344538	1	1	24	0	1	0	0	0	0	0	0	0	128	696	24	2		2	ACCN1	17	31344538	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	244601	31344538	49850672	1911	40905											
CCL1	6346	broad.mit.edu	37	chr17	32688967	32688967	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatttctcaacctctcaccTgtagcacaatttttaaaaaa	2	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32688967	A	A	32688967	1	1	24	0	1	0	0	0	0	0	0	0	2910	1595	55	5		5	CCL1	17	32688967	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1344429	32688967	48506243	1912	40906											
C17orf102	400591	broad.mit.edu	37	chr17	32904699	32904699	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgaatcacaaaggaagGtcacataagagctatggggt	11	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32904699	T	T	32904699	1	4	24	0	1	0	0	0	0	0	0	0	1863	1276	44	3		3	C17orf102	17	32904699	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	215732	32904699	48290511	1913	40907											
TMEM132E	124842	broad.mit.edu	37	chr17	32964910	32964910	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaacccgctggaaaccgtgCccgccttctgccacggcgac	11	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32964910	G	G	32964910	3	3	24	1	0	0	0	0	1	0	0	0	16171	739	26	4	2652	4	TMEM132E	17	32964910	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	60211	32964910	48230300	1914	40908											
UNC45B	146862	broad.mit.edu	37	chr17	33482441	33482441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgactccttgtctggggagGacaagcgggagcatcgaggg	17	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33482441	T	T	33482441	3	4	24	1	0	0	0	0	1	0	0	0	17115	1174	41	3	788	3	UNC45B	17	33482441	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	517531	33482441	47712769	1915	40909											
AMAC1	146861	broad.mit.edu	37	chr17	33520375	33520375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatgatggcaatgctgcCcagcacaacccctgccgcca	9	15	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33520375	A	A	33520375	3	1	24	1	0	0	0	0	1	0	0	0	559	623	22	2	68	2	AMAC1	17	33520375	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	37934	33520375	47674835	1916	40910											
SLFN11	91607	broad.mit.edu	37	chr17	33679960	33679960	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcaatccaagtggctGgtctgaaagtaatccagaaa	9	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33679960	T	T	33679960	2	4	24	1	0	0	0	0	0	0	0	1	14847	1335	47	2		2	SLFN11	17	33679960	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	159585	33679960	47515250	1917	40911											
C17orf66	256957	broad.mit.edu	37	chr17	34195624	34195624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttctttttcagtcccctGctcttggctccatttctgtc	5	14	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34195624	T	T	34195624	1	4	24	0	1	0	0	0	0	0	0	0	1890	1334	46	3		3	C17orf66	17	34195624	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	515664	34195624	46999586	1918	40912											
LYZL6	57151	broad.mit.edu	37	chr17	34263800	34263800	+	Frame_Shift_Del	DEL	G	-	-													ccggacacaatcctttttgcGcagtggatgcctgcaagaag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34263800	-	-	34263800	7	5	24	1	0	1	0	1	0	0	0	0	9222	1079	38	0	118	0	LYZL6	17	34263800	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	68176	34263800	46931410	1919	40913											
TBC1D3C	414060	broad.mit.edu	37	chr17	34610764	34610764	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtcactgacgtatttctgGacccactcctcactggggtc	10	13	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34610764	T	T	34610764	1	4	24	0	1	0	0	0	0	0	0	0	15741	1189	41	3		3	TBC1D3C	17	34610764	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	346964	34610764	46584446	1920	40914											
ZNHIT3	9326	broad.mit.edu	37	chr17	34842459	34842459	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgattggtccccgtttaGgaaacggaaaaaggggcgtg	15	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34842459	T	T	34842459	1	4	24	0	1	0	0	0	0	0	0	0	18337	1015	35	2		2	ZNHIT3	17	34842459	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	231695	34842459	46352751	1921	40915											
MYO19	80179	broad.mit.edu	37	chr17	34883451	34883451	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgaggaacaggcttgaaGgggttcaaggctaccagggt	16	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34883451	A	A	34883451	2	1	24	1	0	0	0	0	0	0	0	1	10161	987	35	4		4	MYO19	17	34883451	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	40992	34883451	46311759	1922	40916											
LHX1	3975	broad.mit.edu	37	chr17	35298037	35298037	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatgacgaccagaacctGggcgccaagcggcggggacc	16	12	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35298037	T	T	35298037	2	4	24	1	0	0	0	0	0	0	0	1	8842	1335	47	2		2	LHX1	17	35298037	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	414586	35298037	45897173	1923	40917											
ACACA	31	broad.mit.edu	37	chr17	35580413	35580413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaggaaaaggtcatgtcCcattaccataaatacttacc	5	10	1	0	rs142810733	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35580413	A	A	35580413	1	1	24	0	1	0	0	0	0	0	0	0	106	638	22	2		2	ACACA	17	35580413	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	282376	35580413	45614797	1924	40918											
PCGF2	7703	broad.mit.edu	37	chr17	36896468	36896468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagggtttgcgtgctacCttcctcaggccgtgcccgcc	13	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36896468	A	A	36896468	1	1	24	0	1	0	0	0	0	0	0	0	11669	696	24	2		2	PCGF2	17	36896468	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1316055	36896468	44298742	1925	40919											
FBXL20	84961	broad.mit.edu	37	chr17	37457329	37457329	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccagaacattccaggcCtattttaaagaaaaagagac	8	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37457329	A	A	37457329	5	1	24	1	0	0	0	0	0	0	1	0	5774	695	24	2	1199	2	FBXL20	17	37457329	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	560861	37457329	43737881	1926	40920											
MED1	5469	broad.mit.edu	37	chr17	37566333	37566333	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgtgagtcaacatccattGaaaatagctccctctgaaag	7	10	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37566333	A	A	37566333	3	1	24	1	0	0	0	0	1	0	0	0	9518	1294	45	4	2608	4	MED1	17	37566333	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	109004	37566333	43628877	1927	40921											
STARD3	10948	broad.mit.edu	37	chr17	37817323	37817323	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacagtgccaagcccccgaCgcacaaatatgtccggtgag	10	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37817323	T	T	37817323	3	4	24	1	0	0	0	0	1	0	0	0	15375	536	19	4	1183	4	STARD3	17	37817323	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	250990	37817323	43377887	1928	40922											
ERBB2	2064	broad.mit.edu	37	chr17	37865979	37865979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttggcctcgtggcctctGctgctgtttgtgcctctctc	11	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37865979	T	T	37865979	1	4	24	0	1	0	0	0	0	0	0	0	5248	1334	46	3		3	ERBB2	17	37865979	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	48656	37865979	43329231	1929	40923											
PSMD3	5709	broad.mit.edu	37	chr17	38144947	38144947	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctccccaggcacagaagatCtctgatgatctgatgcagaa	9	12	2	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38144947	T	T	38144947	2	4	24	1	0	0	0	0	0	0	0	1	12805	903	32	4		4	PSMD3	17	38144947	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	278968	38144947	43050263	1930	40924											
KRT24	192666	broad.mit.edu	37	chr17	38856291	38856291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatttccagggcttgcaGggtacgttttagttctgtta	10	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38856291	T	T	38856291	3	4	24	1	0	0	0	0	1	0	0	0	8532	991	35	2	491	2	KRT24	17	38856291	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	711344	38856291	42338919	1931	40925											
KRT10	3858	broad.mit.edu	37	chr17	38976659	38976659	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catcaccagtggacacatttCgaaggtctttcatttcctgt	7	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38976659	T	T	38976659	3	4	24	1	0	0	0	0	1	0	0	0	8519	884	31	4	890	4	KRT10	17	38976659	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	120368	38976659	42218551	1932	40926											
KRT9	3857	broad.mit.edu	37	chr17	39724160	39724160	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcaccacagctgggagagGagagcctccagctgagactg	16	11	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39724160	T	T	39724160	1	4	24	0	1	0	0	0	0	0	0	0	8572	1189	41	3		3	KRT9	17	39724160	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	747501	39724160	41471050	1933	40927											
STAT5A	6776	broad.mit.edu	37	chr17	40452657	40452657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagccttcctgggggaacGggagctgtgtcttggggcct	17	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40452657	T	T	40452657	1	4	24	0	1	0	0	0	0	0	0	0	15386	1131	39	1		1	STAT5A	17	40452657	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	728497	40452657	40742553	1934	40928											
STAT5A	6776	broad.mit.edu	37	chr17	40459420	40459420	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggggttcctgggccctcagGagaacttgccgggctggaac	17	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40459420	T	T	40459420	4	4	24	1	0	0	0	0	0	1	0	0	15386	1188	41	3	1731	3	STAT5A	17	40459420	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	6763	40459420	40735790	1935	40929											
RPL27	6155	broad.mit.edu	37	chr17	41154647	41154647	+	Intron	DEL	G	-	-													ttgggctgtataggggccccGgcagtatgtgggctaatcct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41154647	-	-	41154647	6	5	24	0	1	1	0	1	0	0	0	0	13686	1131	39	0		0	RPL27	17	41154647	Intron	DEL	G	TCGA-05-4427-01A-21D-1855-08	695227	41154647	40040563	1936	40930											
RND2	8153	broad.mit.edu	37	chr17	41179413	41179413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatggctggggtatggcCatcagctggttagcgagtga	17	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41179413	A	A	41179413	1	1	24	0	1	0	0	0	0	0	0	0	13531	609	21	2		2	RND2	17	41179413	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	24766	41179413	40015797	1937	40931											
SLC4A1	6521	broad.mit.edu	37	chr17	42335508	42335508	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggcccccgaagagctgGcctgtctgctgcagagggtc	14	14	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42335508	T	T	42335508	2	4	24	1	0	0	0	0	0	0	0	1	14764	1190	42	3		3	SLC4A1	17	42335508	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1156095	42335508	38859702	1938	40932											
DBF4B	80174	broad.mit.edu	37	chr17	42824365	42824365	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttggtccttcccctccctGacctaggctccaggctctaa	7	17	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42824365	C	C	42824365	1	2	24	0	1	0	0	0	0	0	0	0	4282	1305	45	4		4	DBF4B	17	42824365	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	488857	42824365	38370845	1939	40933											
C17orf57	124989	broad.mit.edu	37	chr17	45419355	45419355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggagaaaaaaaagttgGgagaaagagtttacaagtac	11	3	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45419355	T	T	45419355	3	4	24	1	0	0	0	0	1	0	0	0	1881	1232	43	2	270	2	C17orf57	17	45419355	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2594990	45419355	35775855	1940	40934											
TBX21	30009	broad.mit.edu	37	chr17	45821847	45821847	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctatttcccttctctctaGattactcagctgaaaattga	4	11	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45821847	T	T	45821847	5	4	24	1	0	0	0	0	0	0	1	0	15779	956	33	3	945	3	TBX21	17	45821847	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	402492	45821847	35373363	1941	40935											
GNGT2	2793	broad.mit.edu	37	chr17	47284633	47284633	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcccaccaccctttctggtCacttcctccttcccggggct	7	19	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47284633	A	A	47284633	1	1	24	0	1	0	0	0	0	0	0	0	6598	841	29	3		3	GNGT2	17	47284633	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1462786	47284633	33910577	1942	40936											
SGCA	6442	broad.mit.edu	37	chr17	48244641	48244641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctctcggtcccttagggGctccaaggacttggtgggga	14	11	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48244641	T	T	48244641	1	4	24	0	1	0	0	0	0	0	0	0	14312	1218	42	3		3	SGCA	17	48244641	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	960008	48244641	32950569	1943	40937											
COL1A1	1277	broad.mit.edu	37	chr17	48271878	48271878	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgccacgggccaaaagagGaagaagatgcccagggagcg	15	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48271878	A	A	48271878	1	1	24	0	1	0	0	0	0	0	0	0	3709	1189	41	4		4	COL1A1	17	48271878	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	27237	48271878	32923332	1944	40938											
ABCC3	8714	broad.mit.edu	37	chr17	48755287	48755287	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagagaagctgctacccCtacatcatctccaaccggtc	6	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48755287	A	A	48755287	2	1	24	1	0	0	0	0	0	0	0	1	54	668	24	2		2	ABCC3	17	48755287	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	483409	48755287	32439923	1945	40939											
TOM1L1	10040	broad.mit.edu	37	chr17	52991148	52991148	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggaggtgtggatgtaagcGaagtcaaagaagtatacctc	13	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52991148	T	T	52991148	4	4	24	1	0	0	0	0	0	1	0	0	16475	1059	37	3	430	3	TOM1L1	17	52991148	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4235861	52991148	28204062	1946	40940											
ANKFN1	162282	broad.mit.edu	37	chr17	54517681	54517681	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccctgcccccctactcCctccagtggaatggagtatg	8	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54517681	T	T	54517681	1	4	24	0	1	0	0	0	0	0	0	0	625	638	22	4		4	ANKFN1	17	54517681	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1526533	54517681	26677529	1947	40941											
DGKE	8526	broad.mit.edu	37	chr17	54939215	54939215	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattatagttctgaacatcGgatactggggcggtggctgc	14	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54939215	T	T	54939215	4	4	24	1	0	0	0	0	0	1	0	0	4508	1117	39	1	1382	1	DGKE	17	54939215	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	421534	54939215	26255995	1948	40942											
SCPEP1	59342	broad.mit.edu	37	chr17	55065091	55065091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctatttgtggataatccCgtgggcactgggttcagtta	11	9	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55065091	A	A	55065091	2	1	24	1	0	0	0	0	0	0	0	1	14048	639	23	1		1	SCPEP1	17	55065091	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	125876	55065091	26130119	1949	40943											
OR4D2	124538	broad.mit.edu	37	chr17	56246911	56246911	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cataaggatgctcatcatatGggcctaaaaccttggttctg	9	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56246911	A	A	56246911	1	1	24	0	1	0	0	0	0	0	0	0	11150	1363	47	4		4	OR4D2	17	56246911	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	1181820	56246911	24948299	1950	40944											
HSF5	124535	broad.mit.edu	37	chr17	56540405	56540405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaagtggctccagctggCtagcctgacttgcagaacat	12	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56540405	A	A	56540405	3	1	24	1	0	0	0	0	1	0	0	0	7466	797	28	3	522	3	HSF5	17	56540405	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	293494	56540405	24654805	1951	40945											
TMEM49	81671	broad.mit.edu	37	chr17	57814793	57814794	+	Intron	DEL	TT	-	-													gtgagactgtgagatatttaTtttttttatttgtttttaag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57814794	-	-	57814793	6	5	24	0	1	1	0	1	0	0	0	0	16296	1508	52	0		0	TMEM49	17	57814793	Intron	DEL	TT	TCGA-05-4427-01A-21D-1855-08	1274388	57814793	23380417	1952	40946											
CA4	762	broad.mit.edu	37	chr17	58236674	58236675	+	Missense_Mutation	DNP	GG	TT	TT													gtcaggcccctgcagcagctGgggcagcgcacggtgataaa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	58236675	TT	TT	58236674	3	4	24	1	0	0	0	0	1	0	0	0	2544	1335	47	2	858	2	CA4	17	58236674	Missense_Mutation	DNP	GG	TCGA-05-4427-01A-21D-1855-08	421881	58236674	22958536	1953	40947											
TANC2	26115	broad.mit.edu	37	chr17	61176638	61176638	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattcggattatggagggcaTgtctcgctctcttccatcct	9	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61176638	A	A	61176638	1	1	24	0	1	0	0	0	0	0	0	0	15664	1479	51	5		5	TANC2	17	61176638	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	2939964	61176638	20018572	1954	40948											
CSH2	1443	broad.mit.edu	37	chr17	61950712	61950712	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggagcctggggagaaacCggagggcaatggagggagcc	20	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61950712	T	T	61950712	1	4	24	0	1	0	0	0	0	0	0	0	3975	667	23	4		4	CSH2	17	61950712	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	774074	61950712	19244498	1955	40949											
CSH2	1443	broad.mit.edu	37	chr17	61951015	61951015	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggaccctgagtggttcgGggagttgggccttgggatcc	17	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61951015	T	T	61951015	1	4	24	0	1	0	0	0	0	0	0	0	3975	1247	43	2		2	CSH2	17	61951015	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	303	61951015	19244195	1956	40950											
ERN1	2081	broad.mit.edu	37	chr17	62142648	62142648	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaacatacagagtgggcCtaggagaaaaacagatacat	9	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62142648	A	A	62142648	5	1	24	1	0	0	0	0	0	0	1	0	5279	695	24	2	2147	2	ERN1	17	62142648	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	191633	62142648	19052562	1957	40951											
TEX2	55852	broad.mit.edu	37	chr17	62270972	62270972	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatttccgactttagcttaGatgccagaataaatctccta	6	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62270972	C	C	62270972	3	2	24	1	0	0	0	0	1	0	0	0	15903	942	33	4	1317	4	TEX2	17	62270972	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	128324	62270972	18924238	1958	40952											
ABCA8	10351	broad.mit.edu	37	chr17	66890271	66890271	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggtgatctgggagattcCtgatagaggagagtcaggaa	16	4	2	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66890271	G	G	66890271	1	3	24	0	1	0	0	0	0	0	0	0	38	696	24	4		4	ABCA8	17	66890271	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4619299	66890271	14304939	1959	40953											
ABCA6	23460	broad.mit.edu	37	chr17	67082843	67082843	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcttctggcctgcatattCtttgtgtagacagctggcaa	9	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67082843	A	A	67082843	4	1	24	1	0	0	0	0	0	1	0	0	36	922	32	3	1040	3	ABCA6	17	67082843	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	192572	67082843	14112367	1960	40954											
KCNJ16	3773	broad.mit.edu	37	chr17	68128937	68128937	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatgacgatggcatttaaaGacctcaaattagtcaacgac	9	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68128937	T	T	68128937	3	4	24	1	0	0	0	0	1	0	0	0	8120	942	33	3	711	3	KCNJ16	17	68128937	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1046094	68128937	13066273	1961	40955											
KCNJ2	3759	broad.mit.edu	37	chr17	68172385	68172385	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaagcactagtacggacaCgccccctgacatagaccttc	8	14	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68172385	G	G	68172385	3	3	24	1	0	0	0	0	1	0	0	0	8121	536	19	4	1207	4	KCNJ2	17	68172385	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	43448	68172385	13022825	1962	40956											
TTYH2	94015	broad.mit.edu	37	chr17	72245641	72245641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtggcagggccttgcttGcctcactgtggtcctctcct	13	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72245641	T	T	72245641	1	4	24	0	1	0	0	0	0	0	0	0	16866	1334	46	3		3	TTYH2	17	72245641	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4073256	72245641	8949569	1963	40957											
TTYH2	94015	broad.mit.edu	37	chr17	72246394	72246394	+	Intron	DEL	C	-	-													tcggcctctctcgctctcttCccgcttcaggaagacctgct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72246394	-	-	72246394	6	5	24	0	1	1	0	1	0	0	0	0	16866	870	30	0		0	TTYH2	17	72246394	Intron	DEL	C	TCGA-05-4427-01A-21D-1855-08	753	72246394	8948816	1964	40958											
DNAI2	64446	broad.mit.edu	37	chr17	72301377	72301377	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaccaagttcatggtggGgaccgagcagggcatcgtca	14	12	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72301377	A	A	72301377	3	1	24	1	0	0	0	0	1	0	0	0	4650	1232	43	4	1037	4	DNAI2	17	72301377	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	54983	72301377	8893833	1965	40959											
USH1G	124590	broad.mit.edu	37	chr17	72916385	72916385	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcggctcagggtgctggaCgtgaggctggagaagctgag	20	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72916385	A	A	72916385	2	1	24	1	0	0	0	0	0	0	0	1	17161	523	19	3		3	USH1G	17	72916385	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	615008	72916385	8278825	1966	40960											
QRICH2	84074	broad.mit.edu	37	chr17	74276296	74276296	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggtagggggctgacccagGagaaggtggtgctgtcccga	18	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74276296	A	A	74276296	1	1	24	0	1	0	0	0	0	0	0	0	12988	1189	41	4		4	QRICH2	17	74276296	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1359911	74276296	6918914	1967	40961											
MGAT5B	146664	broad.mit.edu	37	chr17	74928870	74928870	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggaaggtgagcgcggccCctgcgcgcgggaagcaccag	17	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74928870	G	G	74928870	1	3	24	0	1	0	0	0	0	0	0	0	9642	638	22	4		4	MGAT5B	17	74928870	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	652574	74928870	6266340	1968	40962											
MGAT5B	146664	broad.mit.edu	37	chr17	74942515	74942515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctggagcggatccacGcctacatccagcaccaggtc	12	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74942515	T	T	74942515	3	4	24	1	0	0	0	0	1	0	0	0	9642	1087	38	3	2059	3	MGAT5B	17	74942515	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	13645	74942515	6252695	1969	40963											
TNRC6C	57690	broad.mit.edu	37	chr17	76079138	76079138	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaacaggttcaagcacAgcttttgcagtttgcagcaa	9	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76079138	T	T	76079138	3	4	24	1	0	0	0	0	1	0	0	0	16465	188	7	5	3402	5	TNRC6C	17	76079138	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1136623	76079138	5116072	1970	40964											
BIRC5	332	broad.mit.edu	37	chr17	76212684	76212684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggggaggtggcccgtggGgagtggactgccgctttaat	19	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76212684	T	T	76212684	1	4	24	0	1	0	0	0	0	0	0	0	1443	1247	43	2		2	BIRC5	17	76212684	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	133546	76212684	4982526	1971	40965											
USP36	57602	broad.mit.edu	37	chr17	76799373	76799373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccacgcaagcagactaCgtttccagaccatacctact	5	14	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76799373	T	T	76799373	1	4	24	0	1	0	0	0	0	0	0	0	17194	551	19	4		4	USP36	17	76799373	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	586689	76799373	4395837	1972	40966											
ENGASE	64772	broad.mit.edu	37	chr17	77078168	77078168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggtggctttcgtccaaGggccagcggcccagtgcctc	16	13	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77078168	T	T	77078168	1	4	24	0	1	0	0	0	0	0	0	0	5160	1015	35	2		2	ENGASE	17	77078168	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	278795	77078168	4117042	1973	40967											
RNF213	57674	broad.mit.edu	37	chr17	78327389	78327389	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacatcaggggaggtggcaGaggtggcagaggaggccatg	20	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78327389	C	C	78327389	3	2	24	1	0	0	0	0	1	0	0	0	13588	943	33	4	10950	4	RNF213	17	78327389	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1249221	78327389	2867821	1974	40968											
RPTOR	57521	broad.mit.edu	37	chr17	78516405	78516405	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcagtgaagaaaacgaGcagacagctcatgtgcatgt	12	9	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78516405	T	T	78516405	1	4	24	0	1	0	0	0	0	0	0	0	13776	986	34	3		3	RPTOR	17	78516405	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	189016	78516405	2678805	1975	40969											
FOXK2	3607	broad.mit.edu	37	chr17	80478022	80478022	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgagatcttcacgcccccGggcggcggcggccatggcgg	16	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80478022	T	T	80478022	2	4	24	1	0	0	0	0	0	0	0	1	6075	1103	39	1		1	FOXK2	17	80478022	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1961617	80478022	717188	1976	40970											
DLGAP1	9229	broad.mit.edu	37	chr18	3729256	3729256	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccgcacatagctgtggctCcgcatgcggaagcagccggg	15	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3729256	A	A	3729256	2	1	24	1	0	0	0	0	0	0	0	1	4599	842	30	3		3	DLGAP1	18	3729256	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08		3729256	74347992	1977	40971											
DLGAP1	9229	broad.mit.edu	37	chr18	3879293	3879293	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggttggcgcaggtggagCacttgacgtcgttgttgctc	16	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3879293	T	T	3879293	3	4	24	1	0	0	0	0	1	0	0	0	4599	710	25	4	2252	4	DLGAP1	18	3879293	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	150037	3879293	74197955	1978	40972											
EPB41L3	23136	broad.mit.edu	37	chr18	5410567	5410567	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagccaaaataccaacctCagtggcagtggtctccccgt	8	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5410567	G	G	5410567	3	3	24	1	0	0	0	0	1	0	0	0	5196	835	29	4	1180	4	EPB41L3	18	5410567	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1531274	5410567	72666681	1979	40973											
KIAA0802	23255	broad.mit.edu	37	chr18	8718689	8718689	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacctcgcaaggctgctgtgGaccggctggccacatgcacg	13	15	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8718689	C	C	8718689	1	2	24	0	1	0	0	0	0	0	0	0	8264	1189	41	4		4	KIAA0802	18	8718689	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	3308122	8718689	69358559	1980	40974											
ANKRD12	23253	broad.mit.edu	37	chr18	9216825	9216825	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taagatacttatagcagctgGagcagatgttaacacacaag	9	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9216825	C	C	9216825	3	2	24	1	0	0	0	0	1	0	0	0	640	1174	41	4	744	4	ANKRD12	18	9216825	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	498136	9216825	68860423	1981	40975											
TXNDC2	84203	broad.mit.edu	37	chr18	9887330	9887330	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccaaggagggtgacatctCcaagtccccagaagaagcca	11	13	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9887330	G	G	9887330	3	3	24	1	0	0	0	0	1	0	0	0	16923	855	30	4	860	4	TXNDC2	18	9887330	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	670505	9887330	68189918	1982	40976											
VAPA	9218	broad.mit.edu	37	chr18	9936982	9936982	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggttttgtttatttttaGtggaaagaggcaaaacctga	10	3	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9936982	T	T	9936982	5	4	24	1	0	0	0	0	0	0	1	0	17248	1043	36	3	350	3	VAPA	18	9936982	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	49652	9936982	68140266	1983	40977											
ANKRD30B	374860	broad.mit.edu	37	chr18	14780020	14780020	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatattcttgggattctggGgtattgtgtattattgctgt	12	3	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14780020	T	T	14780020	2	4	24	1	0	0	0	0	0	0	0	1	659	1246	43	2		2	ANKRD30B	18	14780020	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	4843038	14780020	63297228	1984	40978											
ANKRD30B	374860	broad.mit.edu	37	chr18	14784560	14784560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttcaatttaactatgcaAagatgaatagttcaatattg	5	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14784560	T	T	14784560	1	4	24	0	1	0	0	0	0	0	0	0	659	29	1	5		5	ANKRD30B	18	14784560	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	4540	14784560	63292688	1985	40979											
ESCO1	114799	broad.mit.edu	37	chr18	19146258	19146258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatacataaagaaaaaaaCcttcaatgcattaaatgact	3	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19146258	A	A	19146258	1	1	24	0	1	0	0	0	0	0	0	0	5290	522	18	3		3	ESCO1	18	19146258	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4361698	19146258	58930990	1986	40980											
SNRPD1	6632	broad.mit.edu	37	chr18	19192364	19192364	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggattctgtgtgctgtcgGacccagagggtgacggcgcc	16	10	1	2	rs11548768		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19192364	T	T	19192364	1	4	24	0	1	0	0	0	0	0	0	0	14978	1189	41	3		3	SNRPD1	18	19192364	5'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	46106	19192364	58884884	1987	40981											
PSMA8	143471	broad.mit.edu	37	chr18	23751209	23751209	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgttcttgccgatgcccatGttctgggacacagcgacgat	11	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23751209	A	A	23751209	1	1	24	0	1	0	0	0	0	0	0	0	12779	1392	48	4		4	PSMA8	18	23751209	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4558845	23751209	54326039	1988	40982											
DSG4	147409	broad.mit.edu	37	chr18	28986392	28986392	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcaaaatagggctgttacGaggctcgctgggatggttag	14	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28986392	T	T	28986392	1	4	24	0	1	0	0	0	0	0	0	0	4819	1073	37	3		3	DSG4	18	28986392	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5235183	28986392	49090856	1989	40983											
KLHL14	57565	broad.mit.edu	37	chr18	30350257	30350257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcccgggctcctcctgcgGcggcggctgctgctgctgtg	16	15	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30350257	T	T	30350257	3	4	24	1	0	0	0	0	1	0	0	0	8441	1203	42	3	1620	3	KLHL14	18	30350257	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1363865	30350257	47726991	1990	40984											
ASXL3	80816	broad.mit.edu	37	chr18	31324687	31324687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctctggttactcactcGggttcaagtaaacaaaaaga	8	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31324687	T	T	31324687	2	4	24	1	0	0	0	0	0	0	0	1	1072	1103	39	1		1	ASXL3	18	31324687	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	974430	31324687	46752561	1991	40985											
NOL4	8715	broad.mit.edu	37	chr18	31537451	31537451	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgggaccattcggtccaAgttttcatctacaaacagcc	8	11	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31537451	G	G	31537451	2	3	24	1	0	0	0	0	0	0	0	1	10619	69	3	5		5	NOL4	18	31537451	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	212764	31537451	46539797	1992	40986											
RPRD1A	55197	broad.mit.edu	37	chr18	33606995	33606995	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatctgccagcaacatacaCgcatcctctaccattttgga	5	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33606995	G	G	33606995	2	3	24	1	0	0	0	0	0	0	0	1	13726	523	19	4		4	RPRD1A	18	33606995	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2069544	33606995	44470253	1993	40987											
PIK3C3	5289	broad.mit.edu	37	chr18	39573209	39573209	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtattaaatttctttttttAaaaaattattgctctgtaat	3	3	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39573209	T	T	39573209	1	4	24	0	1	0	0	0	0	0	0	0	12007	377	13	5		5	PIK3C3	18	39573209	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	5966214	39573209	38504039	1994	40988											
RIT2	6014	broad.mit.edu	37	chr18	40323655	40323655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccacaattatattcttGggcaagactcaagccttctt	5	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40323655	T	T	40323655	3	4	24	1	0	0	0	0	1	0	0	0	13498	1357	47	2	200	2	RIT2	18	40323655	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	750446	40323655	37753593	1995	40989											
SETBP1	26040	broad.mit.edu	37	chr18	42533228	42533228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctatgaaggctttggaaCgtacagggaaaaggacatcc	13	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42533228	A	A	42533228	3	1	24	1	0	0	0	0	1	0	0	0	14242	536	19	3	4126	3	SETBP1	18	42533228	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2209573	42533228	35544020	1996	40990											
SLC14A2	8170	broad.mit.edu	37	chr18	43204687	43204687	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactttccagcagatacaaaCtctacgaggcagagtttacc	7	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43204687	G	G	43204687	3	3	24	1	0	0	0	0	1	0	0	0	14510	565	20	4	60	4	SLC14A2	18	43204687	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	671459	43204687	34872561	1997	40991											
SLC14A1	6563	broad.mit.edu	37	chr18	43316361	43316361	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcccctccagagtatagcGattccgtgtgtcagcctgct	10	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43316361	T	T	43316361	1	4	24	0	1	0	0	0	0	0	0	0	14509	1073	37	3		3	SLC14A1	18	43316361	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	111674	43316361	34760887	1998	40992											
KIAA1632	57724	broad.mit.edu	37	chr18	43438646	43438646	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgtaaagagtcaagtaacTgcccaaggtgaggcactcct	11	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43438646	A	A	43438646	3	1	24	1	0	0	0	0	1	0	0	0	8319	1580	55	5	644	5	KIAA1632	18	43438646	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	122285	43438646	34638602	1999	40993											
MYO5B	4645	broad.mit.edu	37	chr18	47365454	47365454	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcagagggtgctgaccaCgccttcccctcatttcagac	10	14	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47365454	T	T	47365454	1	4	24	0	1	0	0	0	0	0	0	0	10173	551	19	4		4	MYO5B	18	47365454	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3926808	47365454	30711794	2000	40994											
DCC	1630	broad.mit.edu	37	chr18	50432464	50432464	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtcacagccttcatgggaGacacagtgctactcaagtgt	10	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50432464	A	A	50432464	3	1	24	1	0	0	0	0	1	0	0	0	4315	942	33	4	473	4	DCC	18	50432464	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	3067010	50432464	27644784	2001	40995											
DCC	1630	broad.mit.edu	37	chr18	50994463	50994463	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatcaaattatcaaaagTaattataattttccctgaac	2	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50994463	C	C	50994463	1	2	24	0	1	0	0	0	0	0	0	0	4315	1653	57	5		5	DCC	18	50994463	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	561999	50994463	27082785	2002	40996											
WDR7	23335	broad.mit.edu	37	chr18	54349805	54349805	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattcttaccgaagaagttgAgctttaggagaatattgtaa	9	4	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54349805	T	T	54349805	1	4	24	0	1	0	0	0	0	0	0	0	17447	319	11	5		5	WDR7	18	54349805	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	3355342	54349805	23727443	2003	40997											
WDR7	23335	broad.mit.edu	37	chr18	54424253	54424253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtcctgccttcacgcctGgggtttgaatgaagtactgg	12	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54424253	T	T	54424253	3	4	24	1	0	0	0	0	1	0	0	0	17447	1357	47	2	2483	2	WDR7	18	54424253	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	74448	54424253	23652995	2004	40998											
ALPK2	115701	broad.mit.edu	37	chr18	56274666	56274666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagttacctctggcttggGctgacctgacaataaagaaa	9	10	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56274666	T	T	56274666	3	4	24	1	0	0	0	0	1	0	0	0	545	1203	42	3	6441	3	ALPK2	18	56274666	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1850413	56274666	21802582	2005	40999											
RNF152	220441	broad.mit.edu	37	chr18	59483517	59483517	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacggagaagccgggaggCagcttggtgacaccgcggca	17	11	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59483517	A	A	59483517	2	1	24	1	0	0	0	0	0	0	0	1	13564	697	25	3		3	RNF152	18	59483517	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	3208851	59483517	18593731	2006	41000											
SERPINB11	89778	broad.mit.edu	37	chr18	61379774	61379774	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcaagcaatttaatacatCattctttgtttactgatgct	4	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61379774	A	A	61379774	1	1	24	0	1	0	0	0	0	0	0	0	14211	841	29	3		3	SERPINB11	18	61379774	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1896257	61379774	16697474	2007	41001											
SERPINB2	5055	broad.mit.edu	37	chr18	61570574	61570574	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgcaaaagatttttgtAgatgagctgtgtgcctcaga	10	7	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61570574	T	T	61570574	1	4	24	0	1	0	0	0	0	0	0	0	14214	435	15	5		5	SERPINB2	18	61570574	3'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	190800	61570574	16506674	2008	41002											
SERPINB10	5273	broad.mit.edu	37	chr18	61602339	61602339	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacaaggtactgaagctgcaGctggcagtgggagtgagata	15	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61602339	C	C	61602339	3	2	24	1	0	0	0	0	1	0	0	0	14210	971	34	4	1083	4	SERPINB10	18	61602339	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	31765	61602339	16474909	2009	41003											
TMX3	54495	broad.mit.edu	37	chr18	66365210	66365210	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacataaacgaaaaatacacGgtgtctcttctgcatatgtt	6	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66365210	A	A	66365210	3	1	24	1	0	0	0	0	1	0	0	0	16391	1116	39	4	953	4	TMX3	18	66365210	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4762871	66365210	11712038	2010	41004											
CBLN2	147381	broad.mit.edu	37	chr18	70205360	70205360	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggtgttttaaagggcGgagtcctgggtccagtttgc	15	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70205360	T	T	70205360	1	4	24	0	1	0	0	0	0	0	0	0	2731	1131	39	1		1	CBLN2	18	70205360	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	3840150	70205360	7871888	2011	41005											
NETO1	81832	broad.mit.edu	37	chr18	70416245	70416245	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaccaagggcatctgcTtaccttgaattttctttcta	7	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70416245	G	G	70416245	1	3	24	0	1	0	0	0	0	0	0	0	10434	1624	56	5		5	NETO1	18	70416245	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	210885	70416245	7661003	2012	41006											
NETO1	81832	broad.mit.edu	37	chr18	70532852	70532852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgaatgaagagaggggCcagaaggtaaaaaggaggaa	15	4	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70532852	A	A	70532852	1	1	24	0	1	0	0	0	0	0	0	0	10434	754	26	3		3	NETO1	18	70532852	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	116607	70532852	7544396	2013	41007											
THEG	51298	broad.mit.edu	37	chr19	362382	362382	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacatccagcacctcccagcGaggatctcggtcaggaacgc	11	15	2	0	rs146622836		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	362382	A	A	362382	3	1	24	1	0	0	0	0	1	0	0	0	15980	1058	37	4	185	4	THEG	19	362382	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08		362382	58766601	2014	41008											
ABCA7	10347	broad.mit.edu	37	chr19	1057026	1057026	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccgagccaagcacctgcaGctcatggggggcctgtcccc	12	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1057026	A	A	1057026	2	1	24	1	0	0	0	0	0	0	0	1	37	962	34	4		4	ABCA7	19	1057026	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	694644	1057026	58071957	2015	41009											
PIP5K1C	23396	broad.mit.edu	37	chr19	3639071	3639071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccacacggagactcccCgcgcccccactcaggaccca	9	22	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3639071	A	A	3639071	1	1	24	0	1	0	0	0	0	0	0	0	12036	667	23	1		1	PIP5K1C	19	3639071	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2582045	3639071	55489912	2016	41010											
MATK	4145	broad.mit.edu	37	chr19	3783219	3783219	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtccttgctgtaatgcTgcaggatggtgggacagcca	13	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3783219	C	C	3783219	5	2	24	1	0	0	0	0	0	0	1	0	9424	1594	55	5	974	5	MATK	19	3783219	Splice_Site	SNP	T	TCGA-05-4427-01A-21D-1855-08	144148	3783219	55345764	2017	41011											
MATK	4145	broad.mit.edu	37	chr19	3783287	3783287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcctgttccgttcccGggtggcctctgggtggggtg	16	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3783287	T	T	3783287	1	4	24	0	1	0	0	0	0	0	0	0	9424	1131	39	1		1	MATK	19	3783287	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	68	3783287	55345696	2018	41012											
EBI3	10148	broad.mit.edu	37	chr19	4236894	4236894	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcacagtggcccctctccatCttctggttctagtgacctga	9	14	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4236894	T	T	4236894	1	4	24	0	1	0	0	0	0	0	0	0	4923	928	32	4		4	EBI3	19	4236894	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	453607	4236894	54892089	2019	41013											
CHAF1A	10036	broad.mit.edu	37	chr19	4405995	4405995	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggttaaagagttgttcgtAgtttatagtcttccttgtct	10	5	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4405995	T	T	4405995	1	4	24	0	1	0	0	0	0	0	0	0	3342	435	15	5		5	CHAF1A	19	4405995	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	169101	4405995	54722988	2020	41014											
PLIN5	440503	broad.mit.edu	37	chr19	4529849	4529849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccagcttgtccaggcCcctgcaggcgaggctgttca	11	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4529849	A	A	4529849	3	1	24	1	0	0	0	0	1	0	0	0	12188	623	22	2	1125	2	PLIN5	19	4529849	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	123854	4529849	54599134	2021	41015											
C19orf10	56005	broad.mit.edu	37	chr19	4670147	4670147	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcctgccagcactcaaAtatccgggacggcggtggca	14	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4670147	G	G	4670147	1	3	24	0	1	0	0	0	0	0	0	0	1927	116	4	5		5	C19orf10	19	4670147	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	140298	4670147	54458836	2022	41016											
DENND1C	79958	broad.mit.edu	37	chr19	6477285	6477285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccgctggagaccgtcaCtccgctgccctggggaagag	14	15	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6477285	A	A	6477285	3	1	24	1	0	0	0	0	1	0	0	0	4468	565	20	3	2012	3	DENND1C	19	6477285	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1807138	6477285	52651698	2023	41017											
TNFSF14	8740	broad.mit.edu	37	chr19	6667330	6667330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctgtgaggatttggcCagttgtgcaaatcatattgg	13	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6667330	A	A	6667330	1	1	24	0	1	0	0	0	0	0	0	0	16430	609	21	2		2	TNFSF14	19	6667330	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	190045	6667330	52461653	2024	41018											
C3	718	broad.mit.edu	37	chr19	6678128	6678128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcatgggcggggcagtcGggcggtcgcgcgcacgcgca	21	12	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6678128	T	T	6678128	1	4	24	0	1	0	0	0	0	0	0	0	2226	1131	39	1		1	C3	19	6678128	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	10798	6678128	52450855	2025	41019											
EMR1	2015	broad.mit.edu	37	chr19	6898526	6898526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtggatatctatcagtggGgtgagttcatgtatttctga	13	4	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6898526	T	T	6898526	1	4	24	0	1	0	0	0	0	0	0	0	5146	1247	43	2		2	EMR1	19	6898526	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	220398	6898526	52230457	2026	41020											
EMR1	2015	broad.mit.edu	37	chr19	6921922	6921922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgatttgttccctgagGcagagtatctgcctccaaat	9	10	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6921922	T	T	6921922	1	4	24	0	1	0	0	0	0	0	0	0	5146	1218	42	3		3	EMR1	19	6921922	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	23396	6921922	52207061	2027	41021											
MUC16	94025	broad.mit.edu	37	chr19	9000265	9000265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggactgaagtcataggggtGtggtagaagggaggtgggca	20	3	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9000265	T	T	9000265	1	4	24	0	1	0	0	0	0	0	0	0	10067	1392	48	3		3	MUC16	19	9000265	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2078343	9000265	50128718	2028	41022											
MUC16	94025	broad.mit.edu	37	chr19	9002238	9002238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtgttaagggagtggtgGggtaccctggtgcaacagaa	16	5	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9002238	T	T	9002238	1	4	24	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	9002238	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1973	9002238	50126745	2029	41023											
MUC16	94025	broad.mit.edu	37	chr19	9027167	9027167	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatcttcatctgagtaaaaAtgacagagatagcatgctct	7	9	4	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9027167	T	T	9027167	1	4	24	0	1	0	0	0	0	0	0	0	10067	116	4	5		5	MUC16	19	9027167	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	24929	9027167	50101816	2030	41024											
MUC16	94025	broad.mit.edu	37	chr19	9047205	9047205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtctccgtcagtgttgGgaaagttgtagtgctgtctg	16	6	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9047205	T	T	9047205	3	4	24	1	0	0	0	0	1	0	0	0	10067	1232	43	2	9417	2	MUC16	19	9047205	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	20038	9047205	50081778	2031	41025											
MUC16	94025	broad.mit.edu	37	chr19	9068673	9068673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtgatcttcgccagtGtaggggtgggtactgaggtc	16	7	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9068673	T	T	9068673	3	4	24	1	0	0	0	0	1	0	0	0	10067	1377	48	3	25078	3	MUC16	19	9068673	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	21468	9068673	50060310	2032	41026											
MUC16	94025	broad.mit.edu	37	chr19	9089859	9089859	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgtcttgctcactgctggAgacacggagactgggacacc	13	13	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9089859	G	G	9089859	2	3	24	1	0	0	0	0	0	0	0	1	10067	291	11	5		5	MUC16	19	9089859	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	21186	9089859	50039124	2033	41027											
OR7D4	125958	broad.mit.edu	37	chr19	9325365	9325365	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggaggtgggagtcagagCtgacggccagaatgatgagc	18	6	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9325365	T	T	9325365	3	4	24	1	0	0	0	0	1	0	0	0	11314	797	28	4	793	4	OR7D4	19	9325365	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	235506	9325365	49803618	2034	41028											
ZNF559	84527	broad.mit.edu	37	chr19	9452555	9452555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacaagaaaactgatatcgGagaggaacttcctaactgta	8	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9452555	T	T	9452555	3	4	24	1	0	0	0	0	1	0	0	0	18117	1174	41	3	442	3	ZNF559	19	9452555	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	127190	9452555	49676428	2035	41029											
ZNF560	147741	broad.mit.edu	37	chr19	9585018	9585018	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtactaaaccatcacatacAtgttgatttgagccaagtaa	6	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9585018	T	T	9585018	1	4	24	0	1	0	0	0	0	0	0	0	18118	232	8	5		5	ZNF560	19	9585018	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	132463	9585018	49543965	2036	41030											
COL5A3	50509	broad.mit.edu	37	chr19	10096644	10096644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaaaggtcaggctggctGgggcatggtgaatgggctaa	19	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10096644	T	T	10096644	1	4	24	0	1	0	0	0	0	0	0	0	3730	1363	47	2		2	COL5A3	19	10096644	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	511626	10096644	49032339	2037	41031											
RDH8	50700	broad.mit.edu	37	chr19	10132406	10132406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgcggctgcctcccaaCgcgggtgcggccaagatgag	15	14	0	2	rs116330337	byFrequency;by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10132406	A	A	10132406	3	1	24	1	0	0	0	0	1	0	0	0	13304	536	19	3	939	3	RDH8	19	10132406	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	35762	10132406	48996577	2038	41032											
SLC44A2	57153	broad.mit.edu	37	chr19	10748844	10748844	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgagtgtcatcttcttAggaggctgtttcctatatcc	10	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10748844	T	T	10748844	1	4	24	0	1	0	0	0	0	0	0	0	14750	435	15	5		5	SLC44A2	19	10748844	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	616438	10748844	48380139	2039	41033											
ELAVL3	1995	broad.mit.edu	37	chr19	11565622	11565622	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgccgcgccccccgacaGgcccacgcccgccaggccgc	12	25	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11565622	A	A	11565622	2	1	24	1	0	0	0	0	0	0	0	1	5093	991	35	4		4	ELAVL3	19	11565622	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	816778	11565622	47563361	2040	41034											
CACNA1A	773	broad.mit.edu	37	chr19	13340978	13340978	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatggaggagtctcgggtgaGgtactcaaagttgtccatga	15	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13340978	C	C	13340978	3	2	24	1	0	0	0	0	1	0	0	0	2564	1000	35	4	2223	4	CACNA1A	19	13340978	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1775356	13340978	45788005	2041	41035											
LPHN1	22859	broad.mit.edu	37	chr19	14269997	14269997	+	Frame_Shift_Del	DEL	C	-	-													acaccagctcctgcacctggCcctctgtgttcaggactgtg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14269997	-	-	14269997	7	5	24	1	0	1	0	1	0	0	0	0	9002	739	26	0	2407	0	LPHN1	19	14269997	Frame_Shift_Del	DEL	C	TCGA-05-4427-01A-21D-1855-08	929019	14269997	44858986	2042	41036											
CD97	976	broad.mit.edu	37	chr19	14508153	14508153	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctggctgtgccaggcgttCgttcattcttctgaggctag	12	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14508153	A	A	14508153	1	1	24	0	1	0	0	0	0	0	0	0	3079	899	31	3		3	CD97	19	14508153	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	238156	14508153	44620830	2043	41037											
CLEC17A	388512	broad.mit.edu	37	chr19	14705931	14705931	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacctcaggtgatccacccGcctcagcctccgacagtgct	9	17	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14705931	C	C	14705931	1	2	24	0	1	0	0	0	0	0	0	0	3533	1102	38	4		4	CLEC17A	19	14705931	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	197778	14705931	44423052	2044	41038											
CCDC105	126402	broad.mit.edu	37	chr19	15132407	15132407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagccagcgtgatcccCctgcgcttccctgcccccag	11	19	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15132407	T	T	15132407	1	4	24	0	1	0	0	0	0	0	0	0	2766	638	22	4		4	CCDC105	19	15132407	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	426476	15132407	43996576	2045	41039											
PGLYRP2	114770	broad.mit.edu	37	chr19	15579522	15579522	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggggtggctccctcctGgatctcttagagacactcct	11	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15579522	T	T	15579522	2	4	24	1	0	0	0	0	0	0	0	1	11889	1335	47	2		2	PGLYRP2	19	15579522	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	447115	15579522	43549461	2046	41040											
OR10H4	126541	broad.mit.edu	37	chr19	16060414	16060414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacatcatctgtcatcatGggtgtgatgctggtgtgtgt	13	6	4	2	rs138110639		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16060414	T	T	16060414	3	4	24	1	0	0	0	0	1	0	0	0	11002	1348	47	2	599	2	OR10H4	19	16060414	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	480892	16060414	43068569	2047	41041											
CPAMD8	27151	broad.mit.edu	37	chr19	17068695	17068695	+	Frame_Shift_Del	DEL	G	-	-													caatgccaaatccatgtttcGgggaagaaagtcctttttct							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17068695	-	-	17068695	7	5	24	1	0	1	0	1	0	0	0	0	3827	1103	39	0	3509	0	CPAMD8	19	17068695	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	1008281	17068695	42060288	2048	41042											
CPAMD8	27151	broad.mit.edu	37	chr19	17119987	17119987	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggatagaagaggccaggtCccagccttgtaaggcacagc	13	11	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17119987	A	A	17119987	1	1	24	0	1	0	0	0	0	0	0	0	3827	870	30	3		3	CPAMD8	19	17119987	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	51292	17119987	42008996	2049	41043											
GTPBP3	84705	broad.mit.edu	37	chr19	17449643	17449643	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcccgcattcattccctgCgtgaaagcttccggcctatg	8	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17449643	T	T	17449643	1	4	24	0	1	0	0	0	0	0	0	0	6946	783	27	4		4	GTPBP3	19	17449643	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	329656	17449643	41679340	2050	41044											
MEF2B	100271849	broad.mit.edu	37	chr19	19261565	19261565	+	Translation_Start_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtcccaggctgagtggaatGatctttgtctaggaggagaa	14	7	2	3	rs145308225		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19261565	C	C	19261565	1	2	24	1	0	0	0	0	0	0	0	0	9549	1305	45	4		4	MEF2B	19	19261565	Translation_Start_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	1811922	19261565	39867418	2051	41045											
GMIP	51291	broad.mit.edu	37	chr19	19752737	19752737	+	Intron	DEL	C	-	-													ggggcctggccttcctaaggCcccctctgcttgaggtcttc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19752737	-	-	19752737	6	5	24	0	1	1	0	1	0	0	0	0	6555	754	26	0		0	GMIP	19	19752737	Intron	DEL	C	TCGA-05-4427-01A-21D-1855-08	491172	19752737	39376246	2052	41046											
ZNF90	7643	broad.mit.edu	37	chr19	20211321	20211321	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagtccatgactaagatctAccatggacccctggactggc	10	13	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20211321	T	T	20211321	1	4	24	0	1	0	0	0	0	0	0	0	18328	406	14	5		5	ZNF90	19	20211321	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	458584	20211321	38917662	2053	41047											
ZNF257	113835	broad.mit.edu	37	chr19	22256393	22256393	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagtgaaagccagtacaaCaggtgaaacagatgagagat	13	5	0	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22256393	T	T	22256393	1	4	24	0	1	0	0	0	0	0	0	0	17926	493	17	4		4	ZNF257	19	22256393	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2045072	22256393	36872590	2054	41048											
ZNF99	7652	broad.mit.edu	37	chr19	22940339	22940339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctttgccacattcttcaCatttatagggtttctttcca	5	10	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22940339	A	A	22940339	3	1	24	1	0	0	0	0	1	0	0	0	18333	478	17	3	1025	3	ZNF99	19	22940339	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	683946	22940339	36188644	2055	41049											
ZNF675	171392	broad.mit.edu	37	chr19	23845011	23845011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcttagagacagcaataCctgttttattaaaaaataaa	5	6	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23845011	A	A	23845011	3	1	24	1	0	0	0	0	1	0	0	0	18209	521	18	3	1583	3	ZNF675	19	23845011	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	904672	23845011	35283972	2056	41050											
ZNF536	9745	broad.mit.edu	37	chr19	31039467	31039467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccctggacttgtctgtgCggccagatgccgcctccctc	10	17	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039467	A	A	31039467	2	1	24	1	0	0	0	0	0	0	0	1	18101	759	27	3		3	ZNF536	19	31039467	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	7194456	31039467	28089516	2057	41051											
ZNF536	9745	broad.mit.edu	37	chr19	31040234	31040234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagcagtggcacagccaGggtcttctccaagcccagga	13	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31040234	T	T	31040234	3	4	24	1	0	0	0	0	1	0	0	0	18101	991	35	2	3718	2	ZNF536	19	31040234	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	767	31040234	28088749	2058	41052											
TSHZ3	57616	broad.mit.edu	37	chr19	31767546	31767546	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttaacagcgtgcttgctGgcaaaggtccgattgcaaag	12	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31767546	A	A	31767546	2	1	24	1	0	0	0	0	0	0	0	1	16750	1335	47	4		4	TSHZ3	19	31767546	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	727312	31767546	27361437	2059	41053											
KCTD15	79047	broad.mit.edu	37	chr19	34291379	34291379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcctcaccgcaaggagcGgccgagcgggtcctcgcttc	14	15	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34291379	T	T	34291379	3	4	24	1	0	0	0	0	1	0	0	0	8172	1116	39	1	22	1	KCTD15	19	34291379	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2523833	34291379	24837604	2060	41054											
CD22	933	broad.mit.edu	37	chr19	35827309	35827309	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttctccccagccccgcaGggggcatgcacccagggcag	12	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35827309	A	A	35827309	1	1	24	0	1	0	0	0	0	0	0	0	3015	1015	35	4		4	CD22	19	35827309	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1535930	35827309	23301674	2061	41055											
CD22	933	broad.mit.edu	37	chr19	35832311	35832311	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattcactctggaaactcgGtcagcctccaatgtgacttc	8	12	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35832311	T	T	35832311	3	4	24	1	0	0	0	0	1	0	0	0	3015	1261	44	3	1599	3	CD22	19	35832311	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5002	35832311	23296672	2062	41056											
HAUS5	23354	broad.mit.edu	37	chr19	36113710	36113710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctgatgagaaggagcaGgccatggttttgcagggagg	19	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36113710	T	T	36113710	1	4	24	0	1	0	0	0	0	0	0	0	7035	1015	35	2		2	HAUS5	19	36113710	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	281399	36113710	23015273	2063	41057											
MLL4	9757	broad.mit.edu	37	chr19	36223688	36223688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcggtgcagcagcctcggGgccagggcacgcctccttcg	16	15	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36223688	T	T	36223688	3	4	24	1	0	0	0	0	1	0	0	0	9716	1232	43	2	6348	2	MLL4	19	36223688	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	109978	36223688	22905295	2064	41058											
NPHS1	4868	broad.mit.edu	37	chr19	36339975	36339975	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggtcttctggcctcacGgtcatcaccagcacactgcg	9	16	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36339975	T	T	36339975	2	4	24	1	0	0	0	0	0	0	0	1	10677	1103	39	1		1	NPHS1	19	36339975	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	116287	36339975	22789008	2065	41059											
ZNF461	92283	broad.mit.edu	37	chr19	37130105	37130105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattcatagggtttctcaCcagtatgaattctctgatgt	8	8	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37130105	A	A	37130105	3	1	24	1	0	0	0	0	1	0	0	0	18052	507	18	3	553	3	ZNF461	19	37130105	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	790130	37130105	21998878	2066	41060											
ZNF585B	92285	broad.mit.edu	37	chr19	37680982	37680982	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcccggtacaggtttctcTgagaaaggtccaggtgccgc	12	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37680982	A	A	37680982	3	1	24	1	0	0	0	0	1	0	0	0	18145	1580	55	5	2178	5	ZNF585B	19	37680982	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	550877	37680982	21448001	2067	41061											
ZNF383	163087	broad.mit.edu	37	chr19	37721334	37721334	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacggcctcaaggaagactaAccatctgcaatactagaagc	8	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37721334	C	C	37721334	1	2	24	0	1	0	0	0	0	0	0	0	18000	58	2	5		5	ZNF383	19	37721334	5'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	40352	37721334	21407649	2068	41062											
SIPA1L3	23094	broad.mit.edu	37	chr19	38682756	38682756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcttgagcctccctgacaCccctctgaccctgacgctgt	9	17	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38682756	A	A	38682756	1	1	24	0	1	0	0	0	0	0	0	0	14444	522	18	3		3	SIPA1L3	19	38682756	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	961422	38682756	20446227	2069	41063											
RYR1	6261	broad.mit.edu	37	chr19	38934437	38934437	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgcaggaggacgcaacagGtgcagcagctggaggggatg	18	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38934437	C	C	38934437	5	2	24	1	0	0	0	0	0	0	1	0	13879	1275	44	4	443	4	RYR1	19	38934437	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	251681	38934437	20194546	2070	41064											
PAPL	390928	broad.mit.edu	37	chr19	39591297	39591297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaggtaatgtgggggtgCtgggggactggccctctccc	17	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39591297	A	A	39591297	1	1	24	0	1	0	0	0	0	0	0	0	11521	812	28	3		3	PAPL	19	39591297	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	656860	39591297	19537686	2071	41065											
PAK4	10298	broad.mit.edu	37	chr19	39667178	39667178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcagacgcccctgctcGccctcctgctgtgccagctc	11	19	0	1	rs113253977	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39667178	T	T	39667178	1	4	24	0	1	0	0	0	0	0	0	0	11497	1102	38	3		3	PAK4	19	39667178	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	75881	39667178	19461805	2072	41066											
RPS16	6217	broad.mit.edu	37	chr19	39926419	39926419	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgttaccccctagattccTgcccaccgacctctcccaga	5	19	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39926419	A	A	39926419	1	1	24	0	1	0	0	0	0	0	0	0	13738	1595	55	5		5	RPS16	19	39926419	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	259241	39926419	19202564	2073	41067											
LGALS13	29124	broad.mit.edu	37	chr19	40095187	40095187	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accatgagaatatgttacagGaggggagactgcacctgacc	12	9	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40095187	T	T	40095187	1	4	24	0	1	0	0	0	0	0	0	0	8812	1189	41	3		3	LGALS13	19	40095187	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	168768	40095187	19033796	2074	41068											
SPTBN4	57731	broad.mit.edu	37	chr19	41007852	41007852	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacatggaggctccagatgAgaagtccatcatcacctacg	10	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41007852	G	G	41007852	3	3	24	1	0	0	0	0	1	0	0	0	15239	304	11	5	835	5	SPTBN4	19	41007852	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	912665	41007852	18121131	2075	41069											
CYP2A7	1549	broad.mit.edu	37	chr19	41515415	41515415	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggagggaagaagaaagaCtagggaggggagaataggga	21	1	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41515415	T	T	41515415	1	4	24	0	1	0	0	0	0	0	0	0	4196	580	20	4		4	CYP2A7	19	41515415	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	507563	41515415	17613568	2076	41070											
CEACAM21	90273	broad.mit.edu	37	chr19	42085939	42085939	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgaggtctccaacccaGtcagctccaacaggagcgac	11	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42085939	A	A	42085939	3	1	24	1	0	0	0	0	1	0	0	0	3222	1029	36	4	668	4	CEACAM21	19	42085939	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	570524	42085939	17043044	2077	41071											
PSG3	5671	broad.mit.edu	37	chr19	43244401	43244401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttttagaaccccaggaGtctctccaggagaccccatc	7	13	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43244401	T	T	43244401	1	4	24	0	1	0	0	0	0	0	0	0	12762	1044	36	3		3	PSG3	19	43244401	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1158462	43244401	15884582	2078	41072											
PSG1	5669	broad.mit.edu	37	chr19	43348634	43348634	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagagcttttgttctgattGctgaaacttcccattaattg	7	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43348634	C	C	43348634	1	2	24	0	1	0	0	0	0	0	0	0	12759	1334	46	4		4	PSG1	19	43348634	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	104233	43348634	15780349	2079	41073											
PSG6	5675	broad.mit.edu	37	chr19	43411502	43411502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccctgtttctctcattaCaagctgtgggcccctagtgt	8	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43411502	A	A	43411502	1	1	24	0	1	0	0	0	0	0	0	0	12765	493	17	3		3	PSG6	19	43411502	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	62868	43411502	15717481	2080	41074											
PSG6	5675	broad.mit.edu	37	chr19	43421727	43421727	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtctacactgtgttggccaGactgatcttgaactcctgat	9	11	2	4	rs142905466	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43421727	T	T	43421727	1	4	24	0	1	0	0	0	0	0	0	0	12765	957	33	3		3	PSG6	19	43421727	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	10225	43421727	15707256	2081	41075											
PSG6	5675	broad.mit.edu	37	chr19	43528843	43528843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcatgtggaatcacttacGgtataaggtgaaggtgaaat	12	4	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43528843	T	T	43528843	3	4	24	1	0	0	0	0	1	0	0	0	12765	1130	39	1		1	PSG6	19	43528843	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	107116	43528843	15600140	2082	41076											
PSG6	5675	broad.mit.edu	37	chr19	43528992	43528992	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttctcgtccactgtatGccggtccatatataattatt	6	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43528992	C	C	43528992	3	2	24	1	0	0	0	0	1	0	0	0	12765	1319	46	4		4	PSG6	19	43528992	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	149	43528992	15599991	2083	41077											
PSG6	5675	broad.mit.edu	37	chr19	43600892	43600892	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagccacaggtaatgttatCagagggaatgggaagctcct	12	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43600892	G	G	43600892	1	3	24	0	1	0	0	0	0	0	0	0	12765	841	29	4		4	PSG6	19	43600892	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	71900	43600892	15528091	2084	41078											
CCDC61	729440	broad.mit.edu	37	chr19	46511611	46511611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggggccctcccatcatGcaccgcggggcccatgctcg	15	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46511611	T	T	46511611	1	4	24	0	1	0	0	0	0	0	0	0	2860	1334	46	3		3	CCDC61	19	46511611	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2910719	46511611	12617372	2085	41079											
C5AR1	728	broad.mit.edu	37	chr19	47824025	47824026	+	Frame_Shift_Del	DEL	GA	-	-													ctgaagagtccgtggttaggGagagcaagtcattcacgcgc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47824026	-	-	47824025	7	5	24	1	0	1	0	1	0	0	0	0	2304	1175	41	0	996	0	C5AR1	19	47824025	Frame_Shift_Del	DEL	GA	TCGA-05-4427-01A-21D-1855-08	1312414	47824025	11304958	2086	41080											
PLA2G4C	8605	broad.mit.edu	37	chr19	48591898	48591898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcctcaagcaagtgtgcGgtccccattatcatcaggga	11	12	3	0	rs11564555	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48591898	T	T	48591898	1	4	24	0	1	0	0	0	0	0	0	0	12098	1131	39	1		1	PLA2G4C	19	48591898	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	767873	48591898	10537085	2087	41081											
TULP2	7288	broad.mit.edu	37	chr19	49388630	49388630	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggtatgctctgtggccTgctgggaaatggagtccccc	15	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49388630	C	C	49388630	1	2	24	0	1	0	0	0	0	0	0	0	16900	1595	55	5		5	TULP2	19	49388630	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	796732	49388630	9740353	2088	41082											
CGB	1082	broad.mit.edu	37	chr19	49541884	49541884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacacccagtgccccccgGtccacaccccggcggcaggt	11	20	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49541884	T	T	49541884	1	4	24	0	1	0	0	0	0	0	0	0	3326	1276	44	3		3	CGB	19	49541884	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	153254	49541884	9587099	2089	41083											
PPFIA3	8541	broad.mit.edu	37	chr19	49652395	49652395	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactactccgacctggccttGctcctgcagatccccacgca	8	18	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49652395	C	C	49652395	3	2	24	1	0	0	0	0	1	0	0	0	12407	1310	46	4	3353	4	PPFIA3	19	49652395	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	110511	49652395	9476588	2090	41084											
TRPM4	54795	broad.mit.edu	37	chr19	49692259	49692259	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctgcccgcctcctcctcCgtcgctgcccgctctggggg	14	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49692259	T	T	49692259	3	4	24	1	0	0	0	0	1	0	0	0	16713	652	23	4	1984	4	TRPM4	19	49692259	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	39864	49692259	9436724	2091	41085											
CD37	951	broad.mit.edu	37	chr19	49838763	49838763	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgtcagcacctcttctgTgtggtgagtggaccgcttac	11	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49838763	G	G	49838763	1	3	24	0	1	0	0	0	0	0	0	0	3038	1711	59	5		5	CD37	19	49838763	5'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	146504	49838763	9290220	2092	41086											
TEAD2	8463	broad.mit.edu	37	chr19	49858629	49858629	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggagatgagctgggcagaGgacatggttgccattgtctg	17	7	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49858629	A	A	49858629	2	1	24	1	0	0	0	0	0	0	0	1	15861	987	35	4		4	TEAD2	19	49858629	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	19866	49858629	9270354	2093	41087											
RPS11	6205	broad.mit.edu	37	chr19	50002824	50002824	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgccggcctctgagcaagAcagtgcgcttcaacgtgctc	12	13	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50002824	G	G	50002824	3	3	24	1	0	0	0	0	1	0	0	0	13732	275	10	5	427	5	RPS11	19	50002824	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	144195	50002824	9126159	2094	41088											
SHANK1	50944	broad.mit.edu	37	chr19	51189751	51189751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcagccctgcctgggtcCgggtggacgggcagtcccgc	18	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51189751	A	A	51189751	1	1	24	0	1	0	0	0	0	0	0	0	14377	667	23	1		1	SHANK1	19	51189751	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1186927	51189751	7939232	2095	41089											
SIGLEC7	27036	broad.mit.edu	37	chr19	51647777	51647777	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggggacgccccctatgatctCctggatggggacctctgtgt	14	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51647777	G	G	51647777	3	3	24	1	0	0	0	0	1	0	0	0	14426	855	30	4	554	4	SIGLEC7	19	51647777	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	458026	51647777	7481206	2096	41090											
ETFB	2109	broad.mit.edu	37	chr19	51857775	51857775	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttctctcatccagccattCctgggtaccagggacatctg	8	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51857775	G	G	51857775	1	3	24	0	1	0	0	0	0	0	0	0	5312	864	30	4		4	ETFB	19	51857775	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	209998	51857775	7271208	2097	41091											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918113	51918113	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatccactctgggccccaTggacgttccaggcctcacag	11	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51918113	A	A	51918113	3	1	24	1	0	0	0	0	1	0	0	0	14419	1464	51	5	529	5	SIGLEC10	19	51918113	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	60338	51918113	7210870	2098	41092											
SIGLEC8	27181	broad.mit.edu	37	chr19	51957403	51957403	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggccataccaaagagagcGatcctgggggccatcctgtc	12	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51957403	T	T	51957403	1	4	24	0	1	0	0	0	0	0	0	0	14427	1073	37	3		3	SIGLEC8	19	51957403	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	39290	51957403	7171580	2099	41093											
ZNF616	90317	broad.mit.edu	37	chr19	52633911	52633911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtgtcacaaccatgcaCacagggaagaactcagcctg	9	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52633911	A	A	52633911	1	1	24	0	1	0	0	0	0	0	0	0	18168	493	17	3		3	ZNF616	19	52633911	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	676508	52633911	6495072	2100	41094											
ZNF320	162967	broad.mit.edu	37	chr19	53393592	53393592	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagtcaatcctaaatgttaGaaatatgttgtttatcactg	7	5	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53393592	C	C	53393592	1	2	24	0	1	0	0	0	0	0	0	0	17965	957	33	4		4	ZNF320	19	53393592	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	759681	53393592	5735391	2101	41095											
ZNF347	84671	broad.mit.edu	37	chr19	53643421	53643421	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcggactcccaaagtgttGggattacaggcatgagccac	11	12	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53643421	A	A	53643421	1	1	24	0	1	0	0	0	0	0	0	0	17987	1363	47	4		4	ZNF347	19	53643421	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	249829	53643421	5485562	2102	41096											
ZNF761	388561	broad.mit.edu	37	chr19	53950458	53950458	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaacattcaggattgacttCtaaagactcttggtacgtga	8	8	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53950458	G	G	53950458	1	3	24	0	1	0	0	0	0	0	0	0	18265	928	32	4		4	ZNF761	19	53950458	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	307037	53950458	5178525	2103	41097											
LILRA5	353514	broad.mit.edu	37	chr19	54818642	54818642	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccgaacctcctaggacCatcagattcgcttccaaggc	7	16	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54818642	A	A	54818642	1	1	24	0	1	0	0	0	0	0	0	0	8860	609	21	2		2	LILRA5	19	54818642	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	868184	54818642	4310341	2104	41098											
LILRA2	11027	broad.mit.edu	37	chr19	55086873	55086873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctccagcgccctggttGgcagccccaggctgggctct	12	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55086873	T	T	55086873	3	4	24	1	0	0	0	0	1	0	0	0	8857	1357	47	2	824	2	LILRA2	19	55086873	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	268231	55086873	4042110	2105	41099											
KIR2DL3	3804	broad.mit.edu	37	chr19	55253716	55253716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgaccctctggacatcGtcatcacaggtgagagtgtc	11	12	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55253716	T	T	55253716	3	4	24	1	0	0	0	0	1	0	0	0	8388	1145	40	3	371	3	KIR2DL3	19	55253716	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	166843	55253716	3875267	2106	41100											
KIR2DL1	3802	broad.mit.edu	37	chr19	55289928	55289928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcatataaaaaaattatGgaaaaaaggatcccaggact	8	5	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55289928	T	T	55289928	1	4	24	0	1	0	0	0	0	0	0	0	8387	1363	47	2		2	KIR2DL1	19	55289928	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	36212	55289928	3839055	2107	41101											
KIR3DL1	3811	broad.mit.edu	37	chr19	55346480	55346480	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcccagtgggggcagcaAggaaggccttgtttgcctgc	15	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55346480	C	C	55346480	1	2	24	0	1	0	0	0	0	0	0	0	8391	87	3	5		5	KIR3DL1	19	55346480	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	56552	55346480	3782503	2108	41102											
NLRP7	199713	broad.mit.edu	37	chr19	55450622	55450622	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcgttagcgaggccgaatAagaagtgtcctacttgaatc	10	9	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55450622	G	G	55450622	3	3	24	1	0	0	0	0	1	0	0	0	10577	372	13	5	1580	5	NLRP7	19	55450622	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	104142	55450622	3678361	2109	41103											
NLRP13	126204	broad.mit.edu	37	chr19	56424253	56424253	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatttcctcaaagccatcAataataaacaggagcttctc	4	10	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56424253	G	G	56424253	2	3	24	1	0	0	0	0	0	0	0	1	10570	126	5	5		5	NLRP13	19	56424253	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	973631	56424253	2704730	2110	41104											
ZNF460	10794	broad.mit.edu	37	chr19	57803158	57803158	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttcaacatccacactggaGagaagccctatgagtgttta	8	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57803158	T	T	57803158	4	4	24	1	0	0	0	0	0	1	0	0	18051	943	33	3	1259	3	ZNF460	19	57803158	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1378905	57803158	1325825	2111	41105											
ZNF304	57343	broad.mit.edu	37	chr19	57867973	57867973	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgacagccagatgactcatGctgaggtgagacccttcaga	11	10	2	6			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57867973	C	C	57867973	3	2	24	1	0	0	0	0	1	0	0	0	17959	1319	46	4	746	4	ZNF304	19	57867973	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	64815	57867973	1261010	2112	41106											
ZSCAN4	201516	broad.mit.edu	37	chr19	58189271	58189271	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatacaacagtgatctggcTttctttacaggtccacgtcc	8	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58189271	A	A	58189271	1	1	24	0	1	0	0	0	0	0	0	0	18366	1624	56	5		5	ZSCAN4	19	58189271	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	321298	58189271	939712	2113	41107											
ZSCAN4	201516	broad.mit.edu	37	chr19	58189945	58189945	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaggtctttaagtatctctGtcacttattagctcaccaga	6	10	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58189945	C	C	58189945	3	2	24	1	0	0	0	0	1	0	0	0	18366	1377	48	4	984	4	ZSCAN4	19	58189945	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	674	58189945	939038	2114	41108											
ZNF418	147686	broad.mit.edu	37	chr19	58438039	58438039	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacggtttttctccagtgtGaactctctgatgaacacgaa	8	9	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58438039	T	T	58438039	3	4	24	1	0	0	0	0	1	0	0	0	18022	1290	45	3	524	3	ZNF418	19	58438039	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	248094	58438039	690944	2115	41109											
ZSCAN1	284312	broad.mit.edu	37	chr19	58564975	58564975	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgaccagagcggccgccaCcagccatccctcaagcacac	8	19	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58564975	G	G	58564975	3	3	24	1	0	0	0	0	1	0	0	0	18355	506	18	4	797	4	ZSCAN1	19	58564975	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	126936	58564975	564008	2116	41110											
ZSCAN1	284312	broad.mit.edu	37	chr19	58565079	58565079	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggcccttccagtgtgccgActgtgggatggtcttcacct	13	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58565079	T	T	58565079	3	4	24	1	0	0	0	0	1	0	0	0	18355	275	10	5	901	5	ZSCAN1	19	58565079	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	104	58565079	563904	2117	41111											
ZSCAN18	65982	broad.mit.edu	37	chr19	58600232	58600232	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggagggacctgtgaccCcaagaggtcaggacacgtgc	15	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58600232	G	G	58600232	1	3	24	0	1	0	0	0	0	0	0	0	18359	638	22	4		4	ZSCAN18	19	58600232	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	35153	58600232	528751	2118	41112											
ZNF497	162968	broad.mit.edu	37	chr19	58868093	58868093	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctttccgcactcggcgcaGgggaagggcttctcgctgct	14	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58868093	A	A	58868093	2	1	24	1	0	0	0	0	0	0	0	1	18073	987	35	4		4	ZNF497	19	58868093	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	267861	58868093	260890	2119	41113											
ANGPT4	51378	broad.mit.edu	37	chr20	871025	871026	+	Intron	DNP	TG	AT	AT													tctctagctgtgggagaccaTgggctggggtcacgggggag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	871026	AT	AT	871025	1	1	24	0	1	0	0	0	0	0	0	0	612	1479	51	5		5	ANGPT4	20	871025	Intron	DNP	TG	TCGA-05-4427-01A-21D-1855-08		871025	62154495	2120	41114											
ANGPT4	51378	broad.mit.edu	37	chr20	875147	875147	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgggggtccgtggtaaatCttagtcatggactgcatgtg	14	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	875147	A	A	875147	1	1	24	0	1	0	0	0	0	0	0	0	612	928	32	3		3	ANGPT4	20	875147	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	4122	875147	62150373	2121	41115											
SIRPB1	10326	broad.mit.edu	37	chr20	1552524	1552524	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacactgtctcctgcggggTccacgttggtctggaagtct	12	12	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1552524	C	C	1552524	3	2	24	1	0	0	0	0	1	0	0	0	14446	1667	58	5	615	5	SIRPB1	20	1552524	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	677377	1552524	61472996	2122	41116											
VPS16	64601	broad.mit.edu	37	chr20	2843727	2843727	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagatataagcagctcaccAtccaggtgctgctggacagg	11	11	1	1	rs150495430	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2843727	T	T	2843727	3	4	24	1	0	0	0	0	1	0	0	0	17320	217	8	5	1402	5	VPS16	20	2843727	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1291203	2843727	60181793	2123	41117											
VPS16	64601	broad.mit.edu	37	chr20	2847154	2847154	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtattgtcccactgcacGggagccacagatggggccac	12	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2847154	T	T	2847154	2	4	24	1	0	0	0	0	0	0	0	1	17320	1103	39	1		1	VPS16	20	2847154	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	3427	2847154	60178366	2124	41118											
ATRN	8455	broad.mit.edu	37	chr20	3520964	3520964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggactcaatttatgcacCgctagttgctgcatttaggt	11	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3520964	A	A	3520964	3	1	24	1	0	0	0	0	1	0	0	0	1210	652	23	1	600	1	ATRN	20	3520964	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	673810	3520964	59504556	2125	41119											
ADAM33	80332	broad.mit.edu	37	chr20	3651959	3651959	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaagggtggagcccagcctgGagcacagtggcagttatggt	17	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3651959	C	C	3651959	3	2	24	1	0	0	0	0	1	0	0	0	250	1174	41	4	444	4	ADAM33	20	3651959	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	130995	3651959	59373561	2126	41120											
ADAM33	80332	broad.mit.edu	37	chr20	3655281	3655281	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggttgagaagtccttggagCcccggggtggccagggacgc	19	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3655281	T	T	3655281	3	4	24	1	0	0	0	0	1	0	0	0	250	739	26	4	2039	4	ADAM33	20	3655281	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3322	3655281	59370239	2127	41121											
C20orf27	54976	broad.mit.edu	37	chr20	3735083	3735083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcacgcgcacacaggtgcCagtgccaccttcgcaggcta	11	16	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3735083	A	A	3735083	3	1	24	1	0	0	0	0	1	0	0	0	2129	594	21	2	147	2	C20orf27	20	3735083	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	79802	3735083	59290437	2128	41122											
HAO1	54363	broad.mit.edu	37	chr20	7894818	7894818	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatcatggttacctgagttGtggcggcagtttgaatctgt	13	6	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7894818	C	C	7894818	3	2	24	1	0	0	0	0	1	0	0	0	7017	1386	48	4	598	4	HAO1	20	7894818	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4159735	7894818	55130702	2129	41123											
PLCB1	23236	broad.mit.edu	37	chr20	8637754	8637754	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaaaggagagaaaagaaGacagagaaaaaacagggagg	14	2	0	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8637754	T	T	8637754	1	4	24	0	1	0	0	0	0	0	0	0	12122	957	33	3		3	PLCB1	20	8637754	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	742936	8637754	54387766	2130	41124											
PLCB4	5332	broad.mit.edu	37	chr20	9404403	9404403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtttgcaggtgatcctGccggacctggctgtcttgag	13	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9404403	T	T	9404403	2	4	24	1	0	0	0	0	0	0	0	1	12125	1306	46	3		3	PLCB4	20	9404403	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	766649	9404403	53621117	2131	41125											
PLCB4	5332	broad.mit.edu	37	chr20	9416118	9416119	+	Intron	DNP	CC	GA	GA													acagaaagcacaacaggtatCcaggattgtagtttattaag							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	9416119	GA	GA	9416118	1	3	24	0	1	0	0	0	0	0	0	0	12125	870	30	4		4	PLCB4	20	9416118	Intron	DNP	CC	TCGA-05-4427-01A-21D-1855-08	11715	9416118	53609402	2132	41126											
PLCB4	5332	broad.mit.edu	37	chr20	9440414	9440414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagctactcatcaatGcccacgagcagcaaacccag	7	13	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9440414	T	T	9440414	3	4	24	1	0	0	0	0	1	0	0	0	12125	1319	46	3	3331	3	PLCB4	20	9440414	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	24296	9440414	53585106	2133	41127											
PAK7	57144	broad.mit.edu	37	chr20	9523183	9523183	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaccagagagatacaGgaaaatccaaaaactattct	5	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9523183	A	A	9523183	1	1	24	0	1	0	0	0	0	0	0	0	11499	1015	35	4		4	PAK7	20	9523183	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	82769	9523183	53502337	2134	41128											
PAK7	57144	broad.mit.edu	37	chr20	9546566	9546566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagcagttctcgtctctGttgcttccggaggtccattt	10	10	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9546566	T	T	9546566	3	4	24	1	0	0	0	0	1	0	0	0	11499	1386	48	3	727	3	PAK7	20	9546566	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	23383	9546566	53478954	2135	41129											
C20orf94	128710	broad.mit.edu	37	chr20	10594456	10594456	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctgatccatgtcacccttGaagtccagataggcctgctt	8	12	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10594456	T	T	10594456	1	4	24	0	1	0	0	0	0	0	0	0	2143	1305	45	3		3	C20orf94	20	10594456	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1047890	10594456	52431064	2136	41130											
MACROD2	140733	broad.mit.edu	37	chr20	14108201	14108201	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatttttgcaggcaatttTgagggaagagaagaaacttt	11	5	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14108201	A	A	14108201	1	1	24	0	1	0	0	0	0	0	0	0	9234	1827	63	5		5	MACROD2	20	14108201	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3513745	14108201	48917319	2137	41131											
KIF16B	55614	broad.mit.edu	37	chr20	16359504	16359504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccaggctagcctggagcCctgactgctctctgctgcca	10	17	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16359504	A	A	16359504	3	1	24	1	0	0	0	0	1	0	0	0	8348	623	22	2	842	2	KIF16B	20	16359504	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2251303	16359504	46666016	2138	41132											
SEC23B	10483	broad.mit.edu	37	chr20	18485210	18485210	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccccatgaatggcgacaCcaattaggaactcgcgggaa	10	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18485210	T	T	18485210	1	4	24	0	1	0	0	0	0	0	0	0	14105	522	18	4		4	SEC23B	20	18485210	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	2125706	18485210	44540310	2139	41133											
SLC24A3	57419	broad.mit.edu	37	chr20	19634610	19634610	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagattgggtgcaggacagGaggcctagacaggaagctgg	18	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19634610	T	T	19634610	1	4	24	0	1	0	0	0	0	0	0	0	14581	1189	41	3		3	SLC24A3	20	19634610	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1149400	19634610	43390910	2140	41134											
C20orf26	26074	broad.mit.edu	37	chr20	20234189	20234189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctacatgtaaacccttacGttcagcatgactctgcattt	5	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20234189	T	T	20234189	1	4	24	0	1	0	0	0	0	0	0	0	2128	1160	40	3		3	C20orf26	20	20234189	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	599579	20234189	42791331	2141	41135											
CST8	10047	broad.mit.edu	37	chr20	23473776	23473776	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagagagaaagctgaggcaCgcagaccttctctttgaggt	12	9	1	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23473776	T	T	23473776	1	4	24	0	1	0	0	0	0	0	0	0	4012	551	19	4		4	CST8	20	23473776	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3239587	23473776	39551744	2142	41136											
TMEM90B	79953	broad.mit.edu	37	chr20	24565469	24565469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatcttctctcctgtcctGtcctgctggttctctcttgc	6	14	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24565469	T	T	24565469	1	4	24	0	1	0	0	0	0	0	0	0	16342	1392	48	3		3	TMEM90B	20	24565469	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1091693	24565469	38460051	2143	41137											
TMEM90B	79953	broad.mit.edu	37	chr20	24565683	24565683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgttcacagggtggggGtgggggcggcaatcccagcc	19	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24565683	T	T	24565683	1	4	24	0	1	0	0	0	0	0	0	0	16342	1276	44	3		3	TMEM90B	20	24565683	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	214	24565683	38459837	2144	41138											
HM13	81502	broad.mit.edu	37	chr20	30138026	30138026	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccctatctcttccccatGtacctcttcctcctgtggct	4	18	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30138026	A	A	30138026	1	1	24	0	1	0	0	0	0	0	0	0	7284	1392	48	4		4	HM13	20	30138026	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	5572343	30138026	32887494	2145	41139											
DUSP15	128853	broad.mit.edu	37	chr20	30436654	30436654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgctgtgtggggcccggGtcctcctcaccgaagcacag	16	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30436654	T	T	30436654	3	4	24	1	0	0	0	0	1	0	0	0	4855	1276	44	3		3	DUSP15	20	30436654	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	298628	30436654	32588866	2146	41140											
KIF3B	9371	broad.mit.edu	37	chr20	30919105	30919105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttatccacagtctcggGggctggttccaaagtaaagc	11	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30919105	T	T	30919105	3	4	24	1	0	0	0	0	1	0	0	0	8371	1232	43	2	2257	2	KIF3B	20	30919105	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	482451	30919105	32106415	2147	41141											
C20orf112	140688	broad.mit.edu	37	chr20	31041420	31041420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggtccatgccttcagagtCgttcatcttgtcattgtcct	9	11	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31041420	A	A	31041420	3	1	24	1	0	0	0	0	1	0	0	0	2103	884	31	3	798	3	C20orf112	20	31041420	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	122315	31041420	31984100	2148	41142											
ZNF341	84905	broad.mit.edu	37	chr20	32344880	32344880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtcaatcagggaggcaGggagagtgcccctggctggg	19	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32344880	T	T	32344880	1	4	24	0	1	0	0	0	0	0	0	0	17983	1015	35	2		2	ZNF341	20	32344880	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1303460	32344880	30680640	2149	41143											
GGT7	2686	broad.mit.edu	37	chr20	33440304	33440304	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcaggggctgcctgggagtCattgatatggccccggaggt	18	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33440304	A	A	33440304	3	1	24	1	0	0	0	0	1	0	0	0	6428	826	29	3	651	3	GGT7	20	33440304	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1095424	33440304	29585216	2150	41144											
CPNE1	8904	broad.mit.edu	37	chr20	34220814	34220814	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgagatggtcacaggaaatgGacagctgaaccaaggtcacg	13	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34220814	C	C	34220814	3	2	24	1	0	0	0	0	1	0	0	0	3843	1174	41	4	1641	4	CPNE1	20	34220814	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	780510	34220814	28804706	2151	41145											
KIAA1755	85449	broad.mit.edu	37	chr20	36851985	36851985	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcgaattcctcgatggaAgcttgtagcagggaagaggc	13	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36851985	T	T	36851985	2	4	24	1	0	0	0	0	0	0	0	1	8327	59	3	5		5	KIAA1755	20	36851985	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	2631171	36851985	26173535	2152	41146											
KIAA1755	85449	broad.mit.edu	37	chr20	36854101	36854101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactcggtgtggcagtagGggaaggggccttccaggact	16	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36854101	T	T	36854101	3	4	24	1	0	0	0	0	1	0	0	0	8327	1232	43	2	1495	2	KIAA1755	20	36854101	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2116	36854101	26171419	2153	41147											
BPI	671	broad.mit.edu	37	chr20	36963004	36963004	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgagggctgggcagtgGtgatgtcaagtgaacttcaa	16	5	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36963004	C	C	36963004	1	2	24	0	1	0	0	0	0	0	0	0	1499	1276	44	4		4	BPI	20	36963004	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	108903	36963004	26062516	2154	41148											
PPP1R16B	26051	broad.mit.edu	37	chr20	37529180	37529180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggcagctagaccaaccCtagccacacctacttggccc	8	17	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37529180	A	A	37529180	1	1	24	0	1	0	0	0	0	0	0	0	12467	696	24	2		2	PPP1R16B	20	37529180	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	566176	37529180	25496340	2155	41149											
PTPRT	11122	broad.mit.edu	37	chr20	40827780	40827780	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggcaagcatccataccctAtgcctggcagcacctgatca	8	15	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40827780	G	G	40827780	1	3	24	0	1	0	0	0	0	0	0	0	12920	464	16	5		5	PTPRT	20	40827780	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	3298600	40827780	22197740	2156	41150											
PTPRT	11122	broad.mit.edu	37	chr20	41100897	41100897	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccatgtaagctctcctccCttgctcaccgtcttcctcag	5	18	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41100897	T	T	41100897	1	4	24	0	1	0	0	0	0	0	0	0	12920	696	24	4		4	PTPRT	20	41100897	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	273117	41100897	21924623	2157	41151											
MYBL2	4605	broad.mit.edu	37	chr20	42343885	42343885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccgagaaggcagcagtgGcccagaagccccgaagccac	13	15	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42343885	T	T	42343885	3	4	24	1	0	0	0	0	1	0	0	0	10104	1203	42	3	1986	3	MYBL2	20	42343885	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1242988	42343885	20681635	2158	41152											
TOX2	84969	broad.mit.edu	37	chr20	42695416	42695416	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcagctcgggatcctgctCacctggcccatccaacccca	8	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42695416	A	A	42695416	4	1	24	1	0	0	0	0	0	1	0	0	16502	838	29	3	1563	3	TOX2	20	42695416	Nonsense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	351531	42695416	20330104	2159	41153											
R3HDML	140902	broad.mit.edu	37	chr20	42969841	42969841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttctttccccaggtctgGgacaagcggctggccagggc	13	14	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42969841	T	T	42969841	3	4	24	1	0	0	0	0	1	0	0	0	12997	1241	43	2	273	2	R3HDML	20	42969841	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	274425	42969841	20055679	2160	41154											
SLC12A5	57468	broad.mit.edu	37	chr20	44663865	44663865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactccctctgctccctgccCtctcctcatcctaccattct	2	21	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44663865	A	A	44663865	1	1	24	0	1	0	0	0	0	0	0	0	14499	696	24	2		2	SLC12A5	20	44663865	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1694024	44663865	18361655	2161	41155											
SLC12A5	57468	broad.mit.edu	37	chr20	44673755	44673755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcaggccatctcgagGgatggcattgtgcccttcct	12	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44673755	T	T	44673755	3	4	24	1	0	0	0	0	1	0	0	0	14499	1223	43	2	1716	2	SLC12A5	20	44673755	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	9890	44673755	18351765	2162	41156											
CDH22	64405	broad.mit.edu	37	chr20	44828105	44828105	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgttgtgccagccggccgtCtcgcggtccagccccttgcc	12	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44828105	T	T	44828105	2	4	24	1	0	0	0	0	0	0	0	1	3137	912	32	4		4	CDH22	20	44828105	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	154350	44828105	18197415	2163	41157											
ZNF334	55713	broad.mit.edu	37	chr20	45129994	45129994	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgtggcgaaatgttttctCacatttgttacattcataag	7	6	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45129994	G	G	45129994	3	3	24	1	0	0	0	0	1	0	0	0	17977	835	29	4	62	4	ZNF334	20	45129994	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	301889	45129994	17895526	2164	41158											
SLC13A3	64849	broad.mit.edu	37	chr20	45217716	45217716	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccctggagctcagcccccAtgggcccaaggccaggccag	12	18	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45217716	T	T	45217716	1	4	24	0	1	0	0	0	0	0	0	0	14506	232	8	5		5	SLC13A3	20	45217716	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	87722	45217716	17807804	2165	41159											
SLC2A10	81031	broad.mit.edu	37	chr20	45358063	45358063	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcggcctgggcttcatctatTtatttgttcctgaaacaaaa	7	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45358063	A	A	45358063	3	1	24	1	0	0	0	0	1	0	0	0	14653	1838	64	5	1497	5	SLC2A10	20	45358063	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	140347	45358063	17667457	2166	41160											
SULF2	55959	broad.mit.edu	37	chr20	46365538	46365538	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagcagttctcattgttGgtgtaggtgttgtggttgtg	17	3	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46365538	T	T	46365538	2	4	24	1	0	0	0	0	0	0	0	1	15489	1335	47	2		2	SULF2	20	46365538	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1007475	46365538	16659982	2167	41161											
PREX1	57580	broad.mit.edu	37	chr20	47266762	47266762	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactgagaaagtggaggccGtaaggtcgtgaatcacaggg	15	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47266762	A	A	47266762	1	1	24	0	1	0	0	0	0	0	0	0	12582	1160	40	4		4	PREX1	20	47266762	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	901224	47266762	15758758	2168	41162											
DPM1	8813	broad.mit.edu	37	chr20	49562404	49562404	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggtgtgagagatcagcatCcataataatgatgtagtttc	10	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49562404	T	T	49562404	3	4	24	1	0	0	0	0	1	0	0	0	4764	855	30	4	454	4	DPM1	20	49562404	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2295642	49562404	13463116	2169	41163											
PHACTR3	116154	broad.mit.edu	37	chr20	58349709	58349709	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaatgagcttctcctgAaacaagctggggtgggggtg	16	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58349709	G	G	58349709	1	3	24	0	1	0	0	0	0	0	0	0	11906	261	9	5		5	PHACTR3	20	58349709	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	8787305	58349709	4675811	2170	41164											
CDH26	60437	broad.mit.edu	37	chr20	58564270	58564270	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtggaaatagccacatAaccaagagggctcctgttag	10	8	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58564270	G	G	58564270	1	3	24	0	1	0	0	0	0	0	0	0	3140	377	13	5		5	CDH26	20	58564270	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	214561	58564270	4461250	2171	41165											
CDH26	60437	broad.mit.edu	37	chr20	58576534	58576534	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacagttggtccccctgagAgagggccgttgtagaagatt	13	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58576534	T	T	58576534	1	4	24	0	1	0	0	0	0	0	0	0	3140	319	11	5		5	CDH26	20	58576534	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	12264	58576534	4448986	2172	41166											
COL9A3	1299	broad.mit.edu	37	chr20	61458657	61458657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgacctcgtaagtgagaGggaagttggttccctgggtc	17	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61458657	T	T	61458657	1	4	24	0	1	0	0	0	0	0	0	0	3741	1015	35	2		2	COL9A3	20	61458657	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2882123	61458657	1566863	2173	41167											
RTEL1	51750	broad.mit.edu	37	chr20	62316829	62316829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgatgctgcagaaagtcGggtggcctcaggctcctgac	15	11	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62316829	T	T	62316829	1	4	24	0	1	0	0	0	0	0	0	0	13831	1131	39	1		1	RTEL1	20	62316829	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	858172	62316829	708691	2174	41168											
PRPF6	24148	broad.mit.edu	37	chr20	62659038	62659038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcagcttactcgagcacGggccattttggaaaagtctc	12	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62659038	T	T	62659038	3	4	24	1	0	0	0	0	1	0	0	0	12680	1116	39	1	2354	1	PRPF6	20	62659038	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	342209	62659038	366482	2175	41169											
TCEA2	6919	broad.mit.edu	37	chr20	62701012	62701012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggatcgtgggcctcttGcagggacccggatgtgccct	15	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62701012	T	T	62701012	1	4	24	0	1	0	0	0	0	0	0	0	15790	1334	46	3		3	TCEA2	20	62701012	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	41974	62701012	324508	2176	41170											
OPRL1	4987	broad.mit.edu	37	chr20	62729228	62729228	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgacactctggtcctgctgAcgctgcccttccagggcacg	11	17	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62729228	T	T	62729228	3	4	24	1	0	0	0	0	1	0	0	0	10980	275	10	5	313	5	OPRL1	20	62729228	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	28216	62729228	296292	2177	41171											
TPTE	7179	broad.mit.edu	37	chr21	10922029	10922029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagttagttcaagaacataCgtggtataaaaatacactca	7	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10922029	A	A	10922029	1	1	24	0	1	0	0	0	0	0	0	0	16554	551	19	3		3	TPTE	21	10922029	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08		10922029	37207866	2178	41172											
TPTE	7179	broad.mit.edu	37	chr21	10959797	10959797	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacttggaaagtcgtgctaaCacactttagccaccaaaaaa	6	10	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10959797	G	G	10959797	2	3	24	1	0	0	0	0	0	0	0	1	16554	465	17	4		4	TPTE	21	10959797	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	37768	10959797	37170098	2179	41173											
BAGE2	85319	broad.mit.edu	37	chr21	11039169	11039169	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgtggggacactaaggTttctagtggaagagtgacag	14	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11039169	C	C	11039169	1	2	24	0	1	0	0	0	0	0	0	0	1297	1740	60	5		5	BAGE2	21	11039169	3'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	79372	11039169	37090726	2180	41174											
HSPA13	6782	broad.mit.edu	37	chr21	15753637	15753637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgaatctgccagctctaCgctttcatatcccacatata	4	12	3	1	rs140867763		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15753637	A	A	15753637	3	1	24	1	0	0	0	0	1	0	0	0	7475	536	19	3	1178	3	HSPA13	21	15753637	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	4714468	15753637	32376258	2181	41175											
HSPA13	6782	broad.mit.edu	37	chr21	15753872	15753872	+	Intron	DEL	A	-	-													aaaacagccgatcctgaaatAaaggaaaattaaaagatgta							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15753872	-	-	15753872	6	5	24	0	1	1	0	1	0	0	0	0	7475	377	13	0		0	HSPA13	21	15753872	Intron	DEL	A	TCGA-05-4427-01A-21D-1855-08	235	15753872	32376023	2182	41176											
BACH1	571	broad.mit.edu	37	chr21	30699390	30699390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacactccttgccaaatgcaGttatcacctgctgtggccaa	8	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30699390	T	T	30699390	3	4	24	1	0	0	0	0	1	0	0	0	1288	1020	36	3	1251	3	BACH1	21	30699390	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	14945518	30699390	17430505	2183	41177											
CLDN17	26285	broad.mit.edu	37	chr21	31538561	31538561	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatgcccgtcaggatgaaGaggactcctgaagttcccag	12	10	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31538561	A	A	31538561	2	1	24	1	0	0	0	0	0	0	0	1	3509	929	33	4		4	CLDN17	21	31538561	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	839171	31538561	16591334	2184	41178											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31743941	31743941	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggttagctcacattgctgGaaatgcctatgataacagct	11	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31743941	T	T	31743941	1	4	24	0	1	0	0	0	0	0	0	0	8594	1189	41	3		3	KRTAP13-2	21	31743941	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	205380	31743941	16385954	2185	41179											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31797728	31797728	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtcagtagaaaccagatCtacagaatggctgataacaa	8	7	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31797728	A	A	31797728	3	1	24	1	0	0	0	0	1	0	0	0	8595	913	32	3	19	3	KRTAP13-3	21	31797728	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	53787	31797728	16332167	2186	41180											
KRTAP6-3	337968	broad.mit.edu	37	chr21	31964926	31964926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttggctatggaggcctGgactgtggctatggaggcct	17	8	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31964926	T	T	31964926	2	4	24	1	0	0	0	0	0	0	0	1	8643	1335	47	2		2	KRTAP6-3	21	31964926	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	167198	31964926	16164969	2187	41181											
KRTAP21-2	337978	broad.mit.edu	37	chr21	32119526	32119526	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagttgcaacacatgatttCaggaggttagatttcagttg	11	5	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32119526	A	A	32119526	1	1	24	0	1	0	0	0	0	0	0	0	8610	841	29	3		3	KRTAP21-2	21	32119526	5'Flank	SNP	C	TCGA-05-4427-01A-21D-1855-08	154600	32119526	16010369	2188	41182											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127674	32127674	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggagccatagccacaggagTtgccgtagtagttgcaacac	12	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32127674	C	C	32127674	3	2	24	1	0	0	0	0	1	0	0	0	8609	1725	60	5	218	5	KRTAP21-1	21	32127674	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	8148	32127674	16002221	2189	41183											
KRTAP8-1	337879	broad.mit.edu	37	chr21	32185575	32185575	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttaggtagcaacagagtGcgtttcctcagtgggatgga	15	7	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32185575	A	A	32185575	1	1	24	0	1	0	0	0	0	0	0	0	8644	1334	46	4		4	KRTAP8-1	21	32185575	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08	57901	32185575	15944320	2190	41184											
TIAM1	7074	broad.mit.edu	37	chr21	32525394	32525394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcatacctcatcctggGtgagaaaagtttctttttga	8	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32525394	T	T	32525394	3	4	24	1	0	0	0	0	1	0	0	0	16013	1261	44	3	1589	3	TIAM1	21	32525394	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	339819	32525394	15604501	2191	41185											
TIAM1	7074	broad.mit.edu	37	chr21	32590058	32590058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacaagggagatgcatcaGgaccacccacttgtgccttg	11	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32590058	T	T	32590058	1	4	24	0	1	0	0	0	0	0	0	0	16013	1015	35	2		2	TIAM1	21	32590058	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	64664	32590058	15539837	2192	41186											
SON	6651	broad.mit.edu	37	chr21	34923100	34923100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgtggggatgacaacGgtggaacatcctgggcatcc	14	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34923100	T	T	34923100	2	4	24	1	0	0	0	0	0	0	0	1	15040	1103	39	1		1	SON	21	34923100	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2333042	34923100	13206795	2193	41187											
ITSN1	6453	broad.mit.edu	37	chr21	35229040	35229040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatggttgtgttttccagGgtgttcagacttacatctct	9	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35229040	T	T	35229040	3	4	24	1	0	0	0	0	1	0	0	0	7996	1246	43	2	3782	2	ITSN1	21	35229040	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	305940	35229040	12900855	2194	41188											
TTC3	7267	broad.mit.edu	37	chr21	38460490	38460490	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattttaaactttttttttaAttaagaatttgacatctgca	3	4	1	2	rs113343952		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38460490	G	G	38460490	1	3	24	0	1	0	0	0	0	0	0	0	16823	116	4	5		5	TTC3	21	38460490	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	3231450	38460490	9669405	2195	41189											
KCNJ15	3772	broad.mit.edu	37	chr21	39671148	39671148	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatggcgataatgaaacatCtttgtcatttctctaagtgt	7	6	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39671148	G	G	39671148	1	3	24	0	1	0	0	0	0	0	0	0	8119	928	32	4		4	KCNJ15	21	39671148	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1210658	39671148	8458747	2196	41190											
DSCAM	1826	broad.mit.edu	37	chr21	41683921	41683921	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatttctaagttccagttAttttcgaaatatttcaagcc	5	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41683921	C	C	41683921	1	2	24	0	1	0	0	0	0	0	0	0	4808	464	16	5		5	DSCAM	21	41683921	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2012773	41683921	6445974	2197	41191											
MX2	4600	broad.mit.edu	37	chr21	42774003	42774003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagatcatcgtgcatcaGtacatccagcagctggtgga	11	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42774003	T	T	42774003	3	4	24	1	0	0	0	0	1	0	0	0	10092	1020	36	3	1559	3	MX2	21	42774003	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1090082	42774003	5355892	2198	41192											
PDE9A	5152	broad.mit.edu	37	chr21	44108030	44108030	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtgtgttttccaggaaCacgaccatctccctgctgac	10	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44108030	T	T	44108030	2	4	24	1	0	0	0	0	0	0	0	1	11749	478	17	4		4	PDE9A	21	44108030	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	1334027	44108030	4021865	2199	41193											
HSF2BP	11077	broad.mit.edu	37	chr21	44949598	44949598	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctggggagaagggacacCggcattttcaccaaaaccct	11	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44949598	A	A	44949598	1	1	24	0	1	0	0	0	0	0	0	0	7464	667	23	1		1	HSF2BP	21	44949598	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	841568	44949598	3180297	2200	41194											
TRPM2	7226	broad.mit.edu	37	chr21	45802661	45802661	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccgggaaggcaaggatggtCagcaggacgtggatgtggcc	18	8	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45802661	G	G	45802661	3	3	24	1	0	0	0	0	1	0	0	0	16711	827	29	4	1310	4	TRPM2	21	45802661	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	853063	45802661	2327234	2201	41195											
TRPM2	7226	broad.mit.edu	37	chr21	45837909	45837909	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgccccgccgcgccgccCcccttcatcctcctcagcca	8	25	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45837909	A	A	45837909	2	1	24	1	0	0	0	0	0	0	0	1	16711	610	22	2		2	TRPM2	21	45837909	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	35248	45837909	2291986	2202	41196											
TRPM2	7226	broad.mit.edu	37	chr21	45845594	45845594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccggatgctgagccgggaGgcaggaagaagacggaggag	20	7	0	3	rs141247092		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45845594	T	T	45845594	3	4	24	1	0	0	0	0	1	0	0	0	16711	1000	35	2	3777	2	TRPM2	21	45845594	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	7685	45845594	2284301	2203	41197											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46011562	46011562	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagacgggcacacagcaggcGtgctggcagggggaggaggt	20	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46011562	C	C	46011562	3	2	24	1	0	0	0	0	1	0	0	0	8584	1136	40	4	297	4	KRTAP10-6	21	46011562	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	165968	46011562	2118333	2204	41198											
POTEH	23784	broad.mit.edu	37	chr22	16288034	16288034	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccccagcaggggagcccaGcccaccccacccagggaaaa	10	18	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16288034	T	T	16288034	1	4	24	0	1	0	0	0	0	0	0	0	12363	986	34	3		3	POTEH	22	16288034	5'Flank	SNP	G	TCGA-05-4427-01A-21D-1855-08		16288034	35016532	2205	41199											
CCT8L2	150160	broad.mit.edu	37	chr22	17072830	17072830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgggcagcgcgcacaccCcaacacgctcaggcttgaag	11	18	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17072830	A	A	17072830	3	1	24	1	0	0	0	0	1	0	0	0	2991	623	22	2	1066	2	CCT8L2	22	17072830	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	784796	17072830	34231736	2206	41200											
XKR3	150165	broad.mit.edu	37	chr22	17264941	17264941	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccagcaggagaagttgatGgcagcatatagcagtgtgat	14	6	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17264941	C	C	17264941	2	2	24	1	0	0	0	0	0	0	0	1	17559	1335	47	4		4	XKR3	22	17264941	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	192111	17264941	34039625	2207	41201											
XKR3	150165	broad.mit.edu	37	chr22	17265283	17265283	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtaactgataacagggaAaatgtcatcagcaatgctat	8	6	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17265283	C	C	17265283	3	2	24	1	0	0	0	0	1	0	0	0	17559	11	1	5	777	5	XKR3	22	17265283	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	342	17265283	34039283	2208	41202											
C22orf25	128989	broad.mit.edu	37	chr22	20031059	20031059	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctaactgagtggtgctgcttCcaagtgtgatggcggggtgt	16	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20031059	G	G	20031059	1	3	24	0	1	0	0	0	0	0	0	0	2161	870	30	4		4	C22orf25	22	20031059	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2765776	20031059	31273507	2209	41203											
RANBP1	5902	broad.mit.edu	37	chr22	20114367	20114367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagtctgtcccgagggcGggcaagccgctgtgggtggg	20	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20114367	A	A	20114367	1	1	24	0	1	0	0	0	0	0	0	0	13133	1131	39	4		4	RANBP1	22	20114367	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	83308	20114367	31190199	2210	41204											
ZDHHC8	29801	broad.mit.edu	37	chr22	20127060	20127060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtacaagaacgtggatGtgcgaggtatccaggtccgc	14	10	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20127060	T	T	20127060	3	4	24	1	0	0	0	0	1	0	0	0	17747	1377	48	3	296	3	ZDHHC8	22	20127060	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	12693	20127060	31177506	2211	41205											
TOP3B	8940	broad.mit.edu	37	chr22	22318677	22318677	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtctgcatggcgtgctgCggccccatgcctgcgagaga	15	14	1	1	rs146300429		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22318677	A	A	22318677	2	1	24	1	0	0	0	0	0	0	0	1	16492	755	27	3		3	TOP3B	22	22318677	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	2191617	22318677	28985889	2212	41206											
CYTSA	23384	broad.mit.edu	37	chr22	24724886	24724886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacactccacagaagacttcGggtaggataaatcttcatgt	9	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24724886	T	T	24724886	3	4	24	1	0	0	0	0	1	0	0	0	4242	1130	39	1	2237	1	CYTSA	22	24724886	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2406209	24724886	26579680	2213	41207											
MYO18B	84700	broad.mit.edu	37	chr22	26164762	26164762	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagcccacaaacacggtGgaaaaggggaatgtctctaa	12	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26164762	T	T	26164762	2	4	24	1	0	0	0	0	0	0	0	1	10160	1335	47	2		2	MYO18B	22	26164762	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	1439876	26164762	25139804	2214	41208											
KREMEN1	83999	broad.mit.edu	37	chr22	29537988	29537988	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgtcatcaaccagggacttCgggggaaatctggagcattt	12	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29537988	T	T	29537988	3	4	24	1	0	0	0	0	1	0	0	0	8513	893	31	4	1350	4	KREMEN1	22	29537988	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3373226	29537988	21766578	2215	41209											
DEPDC5	9681	broad.mit.edu	37	chr22	32200742	32200742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccctaaaaaattttttttAaaaacctgaaaaacagaaaa	3	6	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32200742	T	T	32200742	1	4	24	0	1	0	0	0	0	0	0	0	4482	377	13	5		5	DEPDC5	22	32200742	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2662754	32200742	19103824	2216	41210											
TMPRSS6	164656	broad.mit.edu	37	chr22	37485671	37485671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtcatacatggccagtcgGtcccggcactctgccagcgt	11	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37485671	T	T	37485671	3	4	24	1	0	0	0	0	1	0	0	0	16374	1252	44	3	1673	3	TMPRSS6	22	37485671	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	5284929	37485671	13818895	2217	41211											
APOBEC3A	200315	broad.mit.edu	37	chr22	39358627	39358627	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccatctccagctgctcacAgacgccagcaaagcagtatg	8	15	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39358627	T	T	39358627	1	4	24	0	1	0	0	0	0	0	0	0	791	203	7	5		5	APOBEC3A	22	39358627	3'UTR	SNP	A	TCGA-05-4427-01A-21D-1855-08	1872956	39358627	11945939	2218	41212											
APOBEC3C	27350	broad.mit.edu	37	chr22	39414514	39414515	+	3'UTR	INS	-	A	A													tgagcccctcctggcctcagINSggccattccacagtgctccc							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39414515	A	A	39414514	6	5	24	0	1	1	1	0	0	0	0	0	793	1015	35	0		0	APOBEC3C	22	39414514	3'UTR	INS	-	TCGA-05-4427-01A-21D-1855-08	55887	39414514	11890052	2219	41213											
TAB1	10454	broad.mit.edu	37	chr22	39817889	39817889	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccatggggcacagccgctGgatggggtgacgggcttctt	16	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39817889	T	T	39817889	2	4	24	1	0	0	0	0	0	0	0	1	15614	1335	47	2		2	TAB1	22	39817889	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	403375	39817889	11486677	2220	41214											
PACSIN2	11252	broad.mit.edu	37	chr22	43284825	43284825	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacagggagaatgagttccTgaatgccatgtcactgggag	13	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43284825	C	C	43284825	1	2	24	0	1	0	0	0	0	0	0	0	11469	1595	55	5		5	PACSIN2	22	43284825	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	3466936	43284825	8019741	2221	41215											
MPPED1	758	broad.mit.edu	37	chr22	43870534	43870534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgcagcttcctcctgcCcgcccctctctcagccgtgc	7	20	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43870534	A	A	43870534	1	1	24	0	1	0	0	0	0	0	0	0	9835	638	22	2		2	MPPED1	22	43870534	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	585709	43870534	7434032	2222	41216											
SULT4A1	25830	broad.mit.edu	37	chr22	44237825	44237825	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggtgcctggaggggagaAgccccagcgcggggtgctca	19	11	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44237825	C	C	44237825	1	2	24	0	1	0	0	0	0	0	0	0	15501	87	3	5		5	SULT4A1	22	44237825	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	367291	44237825	7066741	2223	41217											
SAMM50	25813	broad.mit.edu	37	chr22	44392384	44392384	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaccctgtgggaaacccCgtcaataaatgttaaagaca	10	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44392384	A	A	44392384	1	1	24	0	1	0	0	0	0	0	0	0	13940	667	23	1		1	SAMM50	22	44392384	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	154559	44392384	6912182	2224	41218											
PARVB	29780	broad.mit.edu	37	chr22	44536470	44536470	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccactggtttagcagaCttccttagagtcaggcagcc	10	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44536470	G	G	44536470	1	3	24	0	1	0	0	0	0	0	0	0	11563	580	20	4		4	PARVB	22	44536470	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	144086	44536470	6768096	2225	41219											
FAM118A	55007	broad.mit.edu	37	chr22	45728740	45728740	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggttcaagggattctgccTcagccttccgagtagctggc	12	11	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45728740	G	G	45728740	1	3	24	0	1	0	0	0	0	0	0	0	5457	1566	54	5		5	FAM118A	22	45728740	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1192270	45728740	5575826	2226	41220											
PPARA	5465	broad.mit.edu	37	chr22	46611058	46611058	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actattcatccgtctctcctCtttttccccagacacgcttt	3	16	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46611058	G	G	46611058	1	3	24	0	1	0	0	0	0	0	0	0	12393	928	32	4		4	PPARA	22	46611058	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	882318	46611058	4693508	2227	41221											
SBF1	6305	broad.mit.edu	37	chr22	50904684	50904684	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcaggatgggcacataggtGaagctgtgcaggccccagag	17	9	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50904684	T	T	50904684	3	4	24	1	0	0	0	0	1	0	0	0	13970	1281	45	3	5025	3	SBF1	22	50904684	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4293626	50904684	399882	2228	41222											
CSF2RA	1438	broad.mit.edu	37	chrX	1413187	1413187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtagacaggacctctcGggttcaggggtgtgtcctgc	15	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1413187	T	T	1413187	1	4	24	0	1	0	0	0	0	0	0	0	3968	1131	39	1		1	CSF2RA	23	1413187	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08		1413187	153857373	2229	41223											
DHRSX	207063	broad.mit.edu	37	chrX	2209448	2209448	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcaataattcccatggatatCctgttttgctgagacacttc	6	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2209448	G	G	2209448	1	3	24	0	1	0	0	0	0	0	0	0	4539	870	30	4		4	DHRSX	23	2209448	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	796261	2209448	153061112	2230	41224											
GYG2	8908	broad.mit.edu	37	chrX	2773196	2773196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaacacggcagctttgacGgtaagtcagggcagcccgga	15	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2773196	T	T	2773196	3	4	24	1	0	0	0	0	1	0	0	0	6971	1130	39	1	598	1	GYG2	23	2773196	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	563748	2773196	152497364	2231	41225											
ARSH	347527	broad.mit.edu	37	chrX	2924774	2924774	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactctgaccccctccctgTatgtgggagtctcccttacc	9	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2924774	A	A	2924774	1	1	24	0	1	0	0	0	0	0	0	0	997	1653	57	5		5	ARSH	23	2924774	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	151578	2924774	152345786	2232	41226											
MXRA5	25878	broad.mit.edu	37	chrX	3242456	3242456	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctggttctgcaagaatctGggctctcacacctgtgtagt	10	10	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3242456	C	C	3242456	3	2	24	1	0	0	0	0	1	0	0	0	10097	1357	47	4	7228	4	MXRA5	23	3242456	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	317682	3242456	152028104	2233	41227											
MXRA5	25878	broad.mit.edu	37	chrX	3261746	3261746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcacggaagccagggatcgGaacgtgcagtggacctcgct	16	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3261746	T	T	3261746	3	4	24	1	0	0	0	0	1	0	0	0	10097	1165	41	3	8381	3	MXRA5	23	3261746	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	19290	3261746	152008814	2234	41228											
NLGN4X	57502	broad.mit.edu	37	chrX	5811759	5811759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catactcttccacatgtgacGtgaaattatcttaaaccaat	4	10	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5811759	T	T	5811759	1	4	24	0	1	0	0	0	0	0	0	0	10559	1160	40	3		3	NLGN4X	23	5811759	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2550013	5811759	149458801	2235	41229											
VCX	26609	broad.mit.edu	37	chrX	7811752	7811752	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccagcacgaccccctgagtCaggaggccgagctggaggaa	14	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7811752	A	A	7811752	3	1	24	1	0	0	0	0	1	0	0	0	17269	827	29	3	322	3	VCX	23	7811752	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1999993	7811752	147458808	2236	41230											
FAM9A	171482	broad.mit.edu	37	chrX	8761700	8761700	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaccaaatagaacagaccTttagtaattgctcaagtagc	7	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8761700	C	C	8761700	3	2	24	1	0	0	0	0	1	0	0	0	5716	1623	56	5	77	5	FAM9A	23	8761700	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	949948	8761700	146508860	2237	41231											
FAM9B	171483	broad.mit.edu	37	chrX	9001089	9001089	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggatccgtggctggttgtCctgggaagctagaggcgatc	16	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9001089	A	A	9001089	1	1	24	0	1	0	0	0	0	0	0	0	5717	870	30	3		3	FAM9B	23	9001089	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	239389	9001089	146269471	2238	41232											
WWC3	55841	broad.mit.edu	37	chrX	10062039	10062039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatgtgaaatctaacgaGcatgggggtgaggtggggca	16	4	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10062039	T	T	10062039	1	4	24	0	1	0	0	0	0	0	0	0	17540	986	34	3		3	WWC3	23	10062039	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1060950	10062039	145208521	2239	41233											
WWC3	55841	broad.mit.edu	37	chrX	10094125	10094125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgagcgccgcctgcacgCgctcttccctcccccgttct	9	20	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10094125	A	A	10094125	1	1	24	0	1	0	0	0	0	0	0	0	17540	783	27	3		3	WWC3	23	10094125	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	32086	10094125	145176435	2240	41234											
CLCN4	1183	broad.mit.edu	37	chrX	10174600	10174600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaatgagggcaagaggcGggaggtgagccagctcagct	17	8	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10174600	T	T	10174600	3	4	24	1	0	0	0	0	1	0	0	0	3496	1116	39	1	776	1	CLCN4	23	10174600	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	80475	10174600	145095960	2241	41235											
MID1	4281	broad.mit.edu	37	chrX	10535287	10535287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaggcccgctcccgacGggtctcgctgggagagttgg	16	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10535287	T	T	10535287	3	4	24	1	0	0	0	0	1	0	0	0	9669	1116	39	1	1738	1	MID1	23	10535287	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	360687	10535287	144735273	2242	41236											
ARHGAP6	395	broad.mit.edu	37	chrX	11187941	11187941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctctctgtcagaatcCatggagggcatcattatttt	7	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11187941	A	A	11187941	1	1	24	0	1	0	0	0	0	0	0	0	889	609	21	2		2	ARHGAP6	23	11187941	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	652654	11187941	144082619	2243	41237											
FRMPD4	9758	broad.mit.edu	37	chrX	12708279	12708279	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacaagatggcagcttcgaTtttggtctcatcatgttcat	8	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12708279	G	G	12708279	1	3	24	0	1	0	0	0	0	0	0	0	6119	1508	52	5		5	FRMPD4	23	12708279	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	1520338	12708279	142562281	2244	41238											
EGFL6	25975	broad.mit.edu	37	chrX	13636140	13636140	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagccctgaagaatgacaTagaggagcgaagcctgcgag	14	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13636140	A	A	13636140	3	1	24	1	0	0	0	0	1	0	0	0	5003	1406	49	5	1100	5	EGFL6	23	13636140	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	927861	13636140	141634420	2245	41239											
GLRA2	2742	broad.mit.edu	37	chrX	14599223	14599223	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaccaaagctgtatcaaatCagggagaagaatgagagaga	11	6	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14599223	G	G	14599223	1	3	24	0	1	0	0	0	0	0	0	0	6519	841	29	4		4	GLRA2	23	14599223	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	963083	14599223	140671337	2246	41240											
GLRA2	2742	broad.mit.edu	37	chrX	14599449	14599449	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttctttgccaatgagaagGgtgccaacttccacgatgtc	10	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14599449	A	A	14599449	3	1	24	1	0	0	0	0	1	0	0	0	6519	1232	43	4	501	4	GLRA2	23	14599449	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	226	14599449	140671111	2247	41241											
FANCB	2187	broad.mit.edu	37	chrX	14883071	14883071	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcctcagataaacaacattCctttagtcccaataaaacca	2	12	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14883071	G	G	14883071	3	3	24	1	0	0	0	0	1	0	0	0	5720	864	30	4	2049	4	FANCB	23	14883071	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	283622	14883071	140387489	2248	41242											
MOSPD2	158747	broad.mit.edu	37	chrX	14932624	14932624	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtttttgtcactccctaGcccagcagaagaactgtact	7	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14932624	T	T	14932624	5	4	24	1	0	0	0	0	0	0	1	0	9810	985	34	3	1034	3	MOSPD2	23	14932624	Splice_Site	SNP	G	TCGA-05-4427-01A-21D-1855-08	49553	14932624	140337936	2249	41243											
ASB9	140462	broad.mit.edu	37	chrX	15276996	15276996	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaaagctacctggctgaTgaggttcctcagagacagct	10	10	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15276996	A	A	15276996	3	1	24	1	0	0	0	0	1	0	0	0	1034	1464	51	5	771	5	ASB9	23	15276996	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	344372	15276996	139993564	2250	41244											
NHS	4810	broad.mit.edu	37	chrX	17705957	17705957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcccagccacaaggccaCcctgcgtggaggagctgcac	11	17	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17705957	A	A	17705957	3	1	24	1	0	0	0	0	1	0	0	0	10506	507	18	3	705	3	NHS	23	17705957	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2428961	17705957	137564603	2251	41245											
RAI2	10742	broad.mit.edu	37	chrX	17818874	17818874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagccttgacttcgccGctggggtggttgggctggct	15	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17818874	T	T	17818874	3	4	24	1	0	0	0	0	1	0	0	0	13117	1078	38	3	339	3	RAI2	23	17818874	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	112917	17818874	137451686	2252	41246											
PHKA2	5256	broad.mit.edu	37	chrX	18956834	18956834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttttcgaagagcttgaGttcagcagggtcataatgca	11	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18956834	T	T	18956834	3	4	24	1	0	0	0	0	1	0	0	0	11939	1029	36	3	2851	3	PHKA2	23	18956834	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1137960	18956834	136313726	2253	41247											
GPR64	10149	broad.mit.edu	37	chrX	19028713	19028713	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcccctcttaccaccacttCagtttgcgaagtcgtacctt	6	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19028713	T	T	19028713	1	4	24	0	1	0	0	0	0	0	0	0	6770	841	29	4		4	GPR64	23	19028713	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	71879	19028713	136241847	2254	41248											
RPS6KA3	6197	broad.mit.edu	37	chrX	20173624	20173624	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggttcaaagcagaatatgtAgctgccatggcaccctgaac	10	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20173624	T	T	20173624	2	4	24	1	0	0	0	0	0	0	0	1	13763	407	15	5		5	RPS6KA3	23	20173624	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	1144911	20173624	135096936	2255	41249											
CNKSR2	22866	broad.mit.edu	37	chrX	21549943	21549943	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actaccctaacatgtttctaCatcttctcctttactctaac	1	14	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21549943	T	T	21549943	1	4	24	0	1	0	0	0	0	0	0	0	3639	493	17	4		4	CNKSR2	23	21549943	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1376319	21549943	133720617	2256	41250											
ACOT9	23597	broad.mit.edu	37	chrX	23748737	23748740	+	Intron	DEL	AAAT	-	-													tcatgttggtctccctttaaAaataaataacacacttcagg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23748740	-	-	23748737	6	5	24	0	1	1	0	1	0	0	0	0	157	29	1	0		0	ACOT9	23	23748737	Intron	DEL	AAAT	TCGA-05-4427-01A-21D-1855-08	2198794	23748737	131521823	2257	41251											
EIF2S3	1968	broad.mit.edu	37	chrX	24089624	24089624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaactaattcactttataGgtgttttaggaaataaaaaa	6	5	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24089624	T	T	24089624	1	4	24	0	1	0	0	0	0	0	0	0	5051	1015	35	2		2	EIF2S3	23	24089624	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	340887	24089624	131180936	2258	41252											
FAM48B1	100130302	broad.mit.edu	37	chrX	24382802	24382802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtgcccccgctcctgcagGaatcagtggcagtgaccttc	13	14	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24382802	T	T	24382802	3	4	24	1	0	0	0	0	1	0	0	0	5624	1174	41	3	1927	3	FAM48B1	23	24382802	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	293178	24382802	130887758	2259	41253											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997759	27997759	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactcagctccatgatctcTccagccgggttgatgagctc	10	13	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27997759	A	A	27997759	4	1	24	1	0	0	0	0	0	1	0	0	4310	1559	54	5	113	5	DCAF8L1	23	27997759	Nonsense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	3614957	27997759	127272801	2260	41254											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29959658	29959658	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggggttgtgtcaacccGttaacccacatctgatctca	9	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29959658	C	C	29959658	1	2	24	0	1	0	0	0	0	0	0	0	7731	1160	40	4		4	IL1RAPL1	23	29959658	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1961899	29959658	125310902	2261	41255											
MAGEB1	4112	broad.mit.edu	37	chrX	30269744	30269744	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatatggctagagagatcatCatatatatctcctttgtgtt	8	6	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30269744	A	A	30269744	1	1	24	0	1	0	0	0	0	0	0	0	9264	841	29	3		3	MAGEB1	23	30269744	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	310086	30269744	125000816	2262	41256											
NR0B1	190	broad.mit.edu	37	chrX	30322836	30322836	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actattaagttcgatgaatcTgtcatggggcccttggtgcg	12	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30322836	A	A	30322836	4	1	24	1	0	0	0	0	0	1	0	0	10708	1588	55	5	143	5	NR0B1	23	30322836	Nonsense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	53092	30322836	124947724	2263	41257											
CXorf21	80231	broad.mit.edu	37	chrX	30577701	30577701	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctccagattcttctctcTagacacttgaagactgattt	7	10	4	5			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30577701	A	A	30577701	4	1	24	1	0	0	0	0	0	1	0	0	4134	1530	53	5	137	5	CXorf21	23	30577701	Nonsense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	254865	30577701	124692859	2264	41258											
GK	2710	broad.mit.edu	37	chrX	30714283	30714283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgagtaagttctgttttGctctaaatatagttttccca	7	8	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30714283	T	T	30714283	1	4	24	0	1	0	0	0	0	0	0	0	6484	1334	46	3		3	GK	23	30714283	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	136582	30714283	124556277	2265	41259											
DMD	1756	broad.mit.edu	37	chrX	32235069	32235069	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatttagcatgttcccaattCtcaggaatttgtgtctttct	6	8	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32235069	A	A	32235069	3	1	24	1	0	0	0	0	1	0	0	0	4620	912	32	3	4947	3	DMD	23	32235069	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1520786	32235069	123035491	2266	41260											
DMD	1756	broad.mit.edu	37	chrX	32632366	32632366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttactgtgtataggtaCtatacacagagtttgctttc	9	6	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32632366	A	A	32632366	1	1	24	0	1	0	0	0	0	0	0	0	4620	580	20	3		3	DMD	23	32632366	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	397297	32632366	122638194	2267	41261											
FAM47A	158724	broad.mit.edu	37	chrX	34147933	34147933	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgttgccaaagttgtgCatccacggggccagtcatca	11	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34147933	A	A	34147933	1	1	24	0	1	0	0	0	0	0	0	0	5620	725	25	3		3	FAM47A	23	34147933	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	1515567	34147933	121122627	2268	41262											
MAGEB16	139604	broad.mit.edu	37	chrX	35820219	35820219	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agttgagtttaccagctgagGacatttacaccctttctctc	7	11	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35820219	T	T	35820219	1	4	24	0	1	0	0	0	0	0	0	0	9266	1189	41	3		3	MAGEB16	23	35820219	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1672286	35820219	119450341	2269	41263											
CXorf59	286464	broad.mit.edu	37	chrX	36089913	36089913	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atacgtgaatgcatgttttgCttactgtgatccaatgtgtc	9	7	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36089913	G	G	36089913	1	3	24	0	1	0	0	0	0	0	0	0	4148	812	28	4		4	CXorf59	23	36089913	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	269694	36089913	119180647	2270	41264											
FAM47C	442444	broad.mit.edu	37	chrX	37027370	37027370	+	Frame_Shift_Del	DEL	G	-	-													tcgcgtatctcatctccatcGggagcctcctgagactggag					rs140151778	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37027370	-	-	37027370	7	5	24	1	0	1	0	1	0	0	0	0	5622	1116	39	0	889	0	FAM47C	23	37027370	Frame_Shift_Del	DEL	G	TCGA-05-4427-01A-21D-1855-08	937457	37027370	118243190	2271	41265											
CYBB	1536	broad.mit.edu	37	chrX	37664301	37664301	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgccagtgaagatgtGttcagctatgaggtggtgat	15	6	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37664301	T	T	37664301	2	4	24	1	0	0	0	0	0	0	0	1	4166	1364	48	3		3	CYBB	23	37664301	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	636931	37664301	117606259	2272	41266											
RPGR	6103	broad.mit.edu	37	chrX	38180393	38180393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagcaatgaaaatgaacaGtagtccaggacaaatggtaa	9	5	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38180393	T	T	38180393	1	4	24	0	1	0	0	0	0	0	0	0	13659	1044	36	3		3	RPGR	23	38180393	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	516092	38180393	117090167	2273	41267											
OTC	5009	broad.mit.edu	37	chrX	38226591	38226591	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagctgaagggccgtgaccTtctcactctaaaaaacttta	8	11	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38226591	A	A	38226591	3	1	24	1	0	0	0	0	1	0	0	0	11395	1609	56	5	131	5	OTC	23	38226591	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	46198	38226591	117043969	2274	41268											
OTC	5009	broad.mit.edu	37	chrX	38229080	38229080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcaagggaagtccttagGcatgatttttgagaaaagaa	11	4	0	3	rs72554337		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38229080	T	T	38229080	3	4	24	1	0	0	0	0	1	0	0	0	11395	1203	42	3	258	3	OTC	23	38229080	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2489	38229080	117041480	2275	41269											
BCOR	54880	broad.mit.edu	37	chrX	39934315	39934315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacctttctctgagcccagtCcacacaagctagaatagacg	8	13	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39934315	A	A	39934315	3	1	24	1	0	0	0	0	1	0	0	0	1391	855	30	3	5031	3	BCOR	23	39934315	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1705235	39934315	115336245	2276	41270											
USP9X	8239	broad.mit.edu	37	chrX	41075817	41075817	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacagaacgtacaattcatGcataaccgaatgcagtacag	7	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41075817	A	A	41075817	3	1	24	1	0	0	0	0	1	0	0	0	17217	1319	46	4	6131	4	USP9X	23	41075817	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	1141502	41075817	114194743	2277	41271											
DDX3X	1654	broad.mit.edu	37	chrX	41202624	41202624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagctcaactcataagaGtaaaacatcatatttcttct	5	8	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41202624	T	T	41202624	1	4	24	0	1	0	0	0	0	0	0	0	4391	1044	36	3		3	DDX3X	23	41202624	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	126807	41202624	114067936	2278	41272											
CASK	8573	broad.mit.edu	37	chrX	41437556	41437556	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatataactcatgctgggatCttatgagagtattgaaaact	9	5	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41437556	A	A	41437556	1	1	24	0	1	0	0	0	0	0	0	0	2691	928	32	3		3	CASK	23	41437556	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	234932	41437556	113833004	2279	41273											
ZNF673	55634	broad.mit.edu	37	chrX	46322729	46322729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggtacggacctgtgcagGtgaggacaggccaggtgagt	17	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46322729	T	T	46322729	3	4	24	1	0	0	0	0	1	0	0	0	18207	1275	44	3	249	3	ZNF673	23	46322729	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	4885173	46322729	108947831	2280	41274											
ZNF630	57232	broad.mit.edu	37	chrX	47920198	47920198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagggaatctgcccttacCcacggagaccaggtgattat	10	12	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47920198	A	A	47920198	3	1	24	1	0	0	0	0	1	0	0	0	18181	637	22	2	1843	2	ZNF630	23	47920198	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1597469	47920198	107350362	2281	41275											
SUV39H1	6839	broad.mit.edu	37	chrX	48564896	48564896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctcgcccagtgtgaccCcaacctgcaggtgtacaacg	9	15	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48564896	A	A	48564896	3	1	24	1	0	0	0	0	1	0	0	0	15530	623	22	2	1001	2	SUV39H1	23	48564896	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	644698	48564896	106705664	2282	41276											
GATA1	2623	broad.mit.edu	37	chrX	48649677	48649678	+	Missense_Mutation	DNP	CC	AT	AT													cactgccccgagcacagccaCcgctgcagctgcggcactgg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	48649678	AT	AT	48649677	3	1	24	1	0	0	0	0	1	0	0	0	6315	507	18	3	163	3	GATA1	23	48649677	Missense_Mutation	DNP	CC	TCGA-05-4427-01A-21D-1855-08	84781	48649677	106620883	2283	41277											
GATA1	2623	broad.mit.edu	37	chrX	48650666	48650666	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggacagggaagttgaggtggGaggggtggcccaaagtaaag	20	4	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48650666	A	A	48650666	1	1	24	0	1	0	0	0	0	0	0	0	6315	1189	41	4		4	GATA1	23	48650666	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	989	48650666	106619894	2284	41278											
PRAF2	11230	broad.mit.edu	37	chrX	48931381	48931381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccttgcacctccctcaGgttccccgtcctggtcctca	8	20	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48931381	T	T	48931381	1	4	24	0	1	0	0	0	0	0	0	0	12523	1015	35	2		2	PRAF2	23	48931381	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	280715	48931381	106339179	2285	41279											
MAGIX	79917	broad.mit.edu	37	chrX	49019348	49019348	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtcccgcctgtctgctccaCaccttttccttctgacaggt	7	17	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49019348	G	G	49019348	1	3	24	0	1	0	0	0	0	0	0	0	9285	493	17	4		4	MAGIX	23	49019348	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	87967	49019348	106251212	2286	41280											
CACNA1F	778	broad.mit.edu	37	chrX	49086871	49086871	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcagaaataagggcggGgtcagctcagccccaccccc	14	14	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49086871	C	C	49086871	1	2	24	0	1	0	0	0	0	0	0	0	2569	1247	43	4		4	CACNA1F	23	49086871	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	67523	49086871	106183689	2287	41281											
SSX7	280658	broad.mit.edu	37	chrX	52681930	52681930	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctgttacctagtttagtCatggcctcatactttctctt	5	10	4	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52681930	T	T	52681930	3	4	24	1	0	0	0	0	1	0	0	0	15327	826	29	4	412	4	SSX7	23	52681930	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	3595059	52681930	102588630	2288	41282											
ITIH5L	347365	broad.mit.edu	37	chrX	54783879	54783879	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcatatgggggtttggGgtctcaggcttggaaagtga	18	4	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54783879	A	A	54783879	2	1	24	1	0	0	0	0	0	0	0	1	7978	1219	43	4		4	ITIH5L	23	54783879	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	2101949	54783879	100486681	2289	41283											
PFKFB1	5207	broad.mit.edu	37	chrX	54959908	54959908	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccacattctgaggagagagCgcaggattaataggaaggag	14	6	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54959908	G	G	54959908	1	3	24	0	1	0	0	0	0	0	0	0	11855	783	27	4		4	PFKFB1	23	54959908	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	176029	54959908	100310652	2290	41284											
PAGE2B	389860	broad.mit.edu	37	chrX	55102502	55102502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgtgagaacaagatccCaatcctcagaaagaggaaat	9	8	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55102502	A	A	55102502	3	1	24	1	0	0	0	0	1	0	0	0	11485	595	21	2	30	2	PAGE2B	23	55102502	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	142594	55102502	100168058	2291	41285											
PAGE5	90737	broad.mit.edu	37	chrX	55249084	55249084	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcttttcaacaggaacTggctctgcttaagatagagg	12	7	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55249084	C	C	55249084	3	2	24	1	0	0	0	0	1	0	0	0	11487	1580	55	5	295	5	PAGE5	23	55249084	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	146582	55249084	100021476	2292	41286											
USP51	158880	broad.mit.edu	37	chrX	55513992	55513992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttgctgtgtctatgtaGcacgtctaatattgcaataa	7	7	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55513992	T	T	55513992	3	4	24	1	0	0	0	0	1	0	0	0	17210	962	34	3	758	3	USP51	23	55513992	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	264908	55513992	99756568	2293	41287											
FOXR2	139628	broad.mit.edu	37	chrX	55651039	55651039	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagagaatccaagagtgcAtgagtcagccagagttgttg	15	6	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55651039	G	G	55651039	3	3	24	1	0	0	0	0	1	0	0	0	6092	217	8	5	897	5	FOXR2	23	55651039	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	137047	55651039	99619521	2294	41288											
RRAGB	10325	broad.mit.edu	37	chrX	55777611	55777611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccgaacatctatctgGgatgaaaccctctataaggt	8	9	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55777611	T	T	55777611	3	4	24	1	0	0	0	0	1	0	0	0	13784	1241	43	2	704	2	RRAGB	23	55777611	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	126572	55777611	99492949	2295	41289											
KLF8	11279	broad.mit.edu	37	chrX	56291841	56291841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccagcctgctagcatgCtacaagctccaatacgtccc	6	17	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56291841	A	A	56291841	3	1	24	1	0	0	0	0	1	0	0	0	8423	796	28	3	320	3	KLF8	23	56291841	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	514230	56291841	98978719	2296	41290											
FAM123B	139285	broad.mit.edu	37	chrX	63411300	63411300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcttctcgggttctggCctccctgccatgagcttccc	11	16	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63411300	A	A	63411300	3	1	24	1	0	0	0	0	1	0	0	0	5469	739	26	3	1544	3	FAM123B	23	63411300	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	7119459	63411300	91859260	2297	41291											
MTMR8	55613	broad.mit.edu	37	chrX	63564891	63564891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgataacgcaaagctatGgccgcttgcctagccaaggt	10	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63564891	T	T	63564891	1	4	24	0	1	0	0	0	0	0	0	0	10043	1363	47	2		2	MTMR8	23	63564891	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	153591	63564891	91705669	2298	41292											
HEPH	9843	broad.mit.edu	37	chrX	65414908	65414908	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctgtttatccctttcatCattctcattgtctctccttc	2	15	4	0	rs148357949	by1000genomes	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65414908	T	T	65414908	1	4	24	0	1	0	0	0	0	0	0	0	7121	841	29	4		4	HEPH	23	65414908	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	1850017	65414908	89855652	2299	41293											
HEPH	9843	broad.mit.edu	37	chrX	65474859	65474859	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacccggtgcaactggaggtTccttgttacacttctaggtg	12	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65474859	C	C	65474859	1	2	24	0	1	0	0	0	0	0	0	0	7121	1798	62	5		5	HEPH	23	65474859	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	59951	65474859	89795701	2300	41294											
AR	367	broad.mit.edu	37	chrX	66941689	66941689	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccaggtaccgcatgcacaAgtcccggatgtacagccagt	10	14	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66941689	C	C	66941689	3	2	24	1	0	0	0	0	1	0	0	0	838	72	3	5	2379	5	AR	23	66941689	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	1466830	66941689	88328871	2301	41295											
OPHN1	4983	broad.mit.edu	37	chrX	67273739	67273739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaatatgagagttacctGggccaacttccttggcctcc	8	14	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67273739	T	T	67273739	1	4	24	0	1	0	0	0	0	0	0	0	10969	1363	47	2		2	OPHN1	23	67273739	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	332050	67273739	87996821	2302	41296											
ARR3	407	broad.mit.edu	37	chrX	69489846	69489846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccgtgcagaaaaggaggCaaattaaagggaagaatagg	14	4	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69489846	A	A	69489846	1	1	24	0	1	0	0	0	0	0	0	0	983	725	25	3		3	ARR3	23	69489846	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2216107	69489846	85780714	2303	41297											
ARR3	407	broad.mit.edu	37	chrX	69499927	69499927	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttagagcctgggagatattCtgggataagactaaacataa	11	5	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69499927	A	A	69499927	1	1	24	0	1	0	0	0	0	0	0	0	983	928	32	3		3	ARR3	23	69499927	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	10081	69499927	85770633	2304	41298											
KIF4A	24137	broad.mit.edu	37	chrX	69549445	69549445	+	Intron	SNP	G	C	C													agacagcaaagatgaaatagGtaaaaagccagctatttgga							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69549445	C	C	69549445	1	2	24	0	1	0	0	0	0	0	0	0	8373	1276	44	4		4	KIF4A	23	69549445	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	49518	69549445	85721115	2305	41299	218	2									
KIF4A	24137	broad.mit.edu	37	chrX	69549455	69549455	+	Intron	SNP	A	T	T													gatgaaataggtaaaaagccAgctatttggactatgacata							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69549455	T	T	69549455	1	4	24	0	1	0	0	0	0	0	0	0	8373	203	7	5		5	KIF4A	23	69549455	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	10	69549455	85721105	2306	41300	218	2									
TEX11	56159	broad.mit.edu	37	chrX	69945100	69945100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtgtgctcttcacataCagagatcataccttcaagga	8	9	4	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69945100	A	A	69945100	1	1	24	0	1	0	0	0	0	0	0	0	15896	493	17	3		3	TEX11	23	69945100	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	395645	69945100	85325460	2307	41301											
SNX12	29934	broad.mit.edu	37	chrX	70280928	70280928	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcttgcaggaacatgtGtaggcagcgttcattctgag	11	10	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70280928	A	A	70280928	3	1	24	1	0	0	0	0	1	0	0	0	14997	1377	48	4	65	4	SNX12	23	70280928	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	335828	70280928	84989632	2308	41302											
FOXO4	4303	broad.mit.edu	37	chrX	70321310	70321310	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccagtaagctggccacGggcgtcggcctgtgtcccaa	12	15	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70321310	T	T	70321310	2	4	24	1	0	0	0	0	0	0	0	1	6085	1103	39	1		1	FOXO4	23	70321310	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	40382	70321310	84949250	2309	41303											
ZMYM3	9203	broad.mit.edu	37	chrX	70462303	70462303	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcaagggggagaggccagtCaggagggagtggctacccaa	18	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70462303	A	A	70462303	1	1	24	0	1	0	0	0	0	0	0	0	17827	841	29	3		3	ZMYM3	23	70462303	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	140993	70462303	84808257	2310	41304											
OGT	8473	broad.mit.edu	37	chrX	70774511	70774511	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacacttgacagtttggaccGaaatgatgacaatagtccat	9	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70774511	A	A	70774511	1	1	24	0	1	0	0	0	0	0	0	0	10942	1073	37	4		4	OGT	23	70774511	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	312208	70774511	84496049	2311	41305											
OGT	8473	broad.mit.edu	37	chrX	70775075	70775075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcgtgccctaagtttgaGtccaaatcacgcagtggtgc	10	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70775075	T	T	70775075	3	4	24	1	0	0	0	0	1	0	0	0	10942	1029	36	3	790	3	OGT	23	70775075	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	564	70775075	84495485	2312	41306											
NHSL2	340527	broad.mit.edu	37	chrX	71264713	71264713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttagacctgcgggtgctGccccacgtcccccaccaaag	10	16	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71264713	T	T	71264713	1	4	24	0	1	0	0	0	0	0	0	0	10507	1334	46	3		3	NHSL2	23	71264713	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	489638	71264713	84005847	2313	41307											
HDAC8	55869	broad.mit.edu	37	chrX	71787454	71787454	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtatcctttgttcatttTattgatgaagaaactgaggc	9	5	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71787454	C	C	71787454	1	2	24	0	1	0	0	0	0	0	0	0	7080	1769	61	5		5	HDAC8	23	71787454	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	522741	71787454	83483106	2314	41308											
NAP1L2	4674	broad.mit.edu	37	chrX	72433698	72433698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcctcttccacagCataatcataataatagtcct	2	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72433698	A	A	72433698	3	1	24	1	0	0	0	0	1	0	0	0	10251	710	25	3	755	3	NAP1L2	23	72433698	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	646244	72433698	82836862	2315	41309											
RLIM	51132	broad.mit.edu	37	chrX	73812090	73812090	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgttcactttcataggtgaCagtgttgtttggtgtctgag	12	6	3	2	rs61752448		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73812090	A	A	73812090	3	1	24	1	0	0	0	0	1	0	0	0	13501	478	17	3	818	3	RLIM	23	73812090	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1378392	73812090	81458470	2316	41310											
KIAA2022	340533	broad.mit.edu	37	chrX	73961080	73961080	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttccacactgtccaatggTcctgggacaccctcttggaa	8	13	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73961080	A	A	73961080	2	1	24	1	0	0	0	0	0	0	0	1	8339	1654	58	5		5	KIAA2022	23	73961080	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	148990	73961080	81309480	2317	41311											
KIAA2022	340533	broad.mit.edu	37	chrX	73962119	73962119	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataacttcattctttaaaTtagcctttgaggattggttt	7	5	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73962119	G	G	73962119	3	3	24	1	0	0	0	0	1	0	0	0	8339	1493	52	5	2285	5	KIAA2022	23	73962119	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1039	73962119	81308441	2318	41312											
ATRX	546	broad.mit.edu	37	chrX	76875947	76875947	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcatagctttagaaacagCagatgcttcattttttagaa	6	6	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76875947	T	T	76875947	3	4	24	1	0	0	0	0	1	0	0	0	1212	710	25	4	2354	4	ATRX	23	76875947	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	2913828	76875947	78394613	2319	41313											
ATRX	546	broad.mit.edu	37	chrX	76889981	76889981	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttgttattcttgttcacTgctttatcttcagcccctac	4	12	5	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76889981	A	A	76889981	1	1	24	0	1	0	0	0	0	0	0	0	1212	1595	55	5		5	ATRX	23	76889981	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	14034	76889981	78380579	2320	41314											
ATP7A	538	broad.mit.edu	37	chrX	77302208	77302208	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgagttgcgtttatctGttggcaaaaatatctttttc	7	5	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77302208	T	T	77302208	1	4	24	0	1	0	0	0	0	0	0	0	1194	1392	48	3		3	ATP7A	23	77302208	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	412227	77302208	77968352	2321	41315											
ITM2A	9452	broad.mit.edu	37	chrX	78618038	78618038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggaagtaaaattacttGgaaatgcttatataaaaatt	6	3	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78618038	T	T	78618038	1	4	24	0	1	0	0	0	0	0	0	0	7982	1363	47	2		2	ITM2A	23	78618038	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1315830	78618038	76652522	2322	41316											
SH3BGRL	6451	broad.mit.edu	37	chrX	80533932	80533932	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgataccctttttttcctGttttataggtcattttattg	5	6	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80533932	C	C	80533932	1	2	24	0	1	0	0	0	0	0	0	0	14354	1392	48	4		4	SH3BGRL	23	80533932	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1915894	80533932	74736628	2323	41317											
CPXCR1	53336	broad.mit.edu	37	chrX	88008723	88008723	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagaaaattggtctctcAcaagcccttaaatgatagat	6	10	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88008723	G	G	88008723	3	3	24	1	0	0	0	0	1	0	0	0	3868	159	6	5	310	5	CPXCR1	23	88008723	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	7474791	88008723	67261837	2324	41318											
PCDH11X	27328	broad.mit.edu	37	chrX	91132636	91132636	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgacaatgctccagtttTcacccagtctttcgtaactg	6	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91132636	A	A	91132636	3	1	24	1	0	0	0	0	1	0	0	0	11602	1783	62	5	1403	5	PCDH11X	23	91132636	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	3123913	91132636	64137924	2325	41319											
PCDH11X	27328	broad.mit.edu	37	chrX	91238288	91238288	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgtcggtgttctatttctCtgtaaacgtcaggccgtact	9	9	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91238288	A	A	91238288	1	1	24	0	1	0	0	0	0	0	0	0	11602	928	32	3		3	PCDH11X	23	91238288	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	105652	91238288	64032272	2326	41320											
PCDH11X	27328	broad.mit.edu	37	chrX	91238335	91238335	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgtacttggtttccagaCtgcccgtcactttggtggtc	10	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91238335	T	T	91238335	1	4	24	0	1	0	0	0	0	0	0	0	11602	580	20	4		4	PCDH11X	23	91238335	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	47	91238335	64032225	2327	41321											
SRPX2	27286	broad.mit.edu	37	chrX	99905754	99905754	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgagaaatcaagacacCattttgatattgtcttcctt	7	7	2	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99905754	T	T	99905754	1	4	24	0	1	0	0	0	0	0	0	0	15283	609	21	4		4	SRPX2	23	99905754	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	8667419	99905754	55364806	2328	41322											
SYTL4	94121	broad.mit.edu	37	chrX	99944921	99944921	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccactttcatgtaccacatCttctgggcgaagatctatca	7	12	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99944921	A	A	99944921	3	1	24	1	0	0	0	0	1	0	0	0	15604	913	32	3	1207	3	SYTL4	23	99944921	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	39167	99944921	55325639	2329	41323											
CSTF2	1478	broad.mit.edu	37	chrX	100093222	100093222	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccttttttttttcctctGcacaggctgctttgattatg	6	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100093222	A	A	100093222	1	1	24	0	1	0	0	0	0	0	0	0	4018	1334	46	4		4	CSTF2	23	100093222	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	148301	100093222	55177338	2330	41324											
CENPI	2491	broad.mit.edu	37	chrX	100385102	100385102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccactctccaccactcttTactaaaatttatttagatat	1	11	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100385102	A	A	100385102	1	1	24	0	1	0	0	0	0	0	0	0	3263	1769	61	5		5	CENPI	23	100385102	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	291880	100385102	54885458	2331	41325											
CENPI	2491	broad.mit.edu	37	chrX	100402979	100402979	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacttatcaagaatttaaTcactatttgacatcaatggt	5	6	3	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100402979	A	A	100402979	3	1	24	1	0	0	0	0	1	0	0	0	3263	1432	50	5	1993	5	CENPI	23	100402979	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	17877	100402979	54867581	2332	41326											
NXF5	55998	broad.mit.edu	37	chrX	101092565	101092565	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatgctgagtttcaggcaaTgcactgagggagtccacgtt	12	9	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101092565	A	A	101092565	2	1	24	1	0	0	0	0	0	0	0	1	10881	1451	51	5		5	NXF5	23	101092565	Silent	SNP	T	TCGA-05-4427-01A-21D-1855-08	689586	101092565	54177995	2333	41327											
NXF2B	728343	broad.mit.edu	37	chrX	101623684	101623684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccaggaagcaggcataCaatgatccttgagtctgtat	12	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101623684	A	A	101623684	1	1	24	0	1	0	0	0	0	0	0	0	10879	493	17	3		3	NXF2B	23	101623684	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	531119	101623684	53646876	2334	41328											
ARMCX5	64860	broad.mit.edu	37	chrX	101857063	101857063	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttgtccttacgttaaacTtggaacatggttgactctgg	9	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101857063	G	G	101857063	1	3	24	0	1	0	0	0	0	0	0	0	966	1624	56	5		5	ARMCX5	23	101857063	5'UTR	SNP	T	TCGA-05-4427-01A-21D-1855-08	233379	101857063	53413497	2335	41329											
NXF3	56000	broad.mit.edu	37	chrX	102334758	102334758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcgtggtaagcactaaGgagaccctgtcgatctccag	10	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102334758	T	T	102334758	3	4	24	1	0	0	0	0	1	0	0	0	10880	1000	35	2	530	2	NXF3	23	102334758	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	477695	102334758	52935802	2336	41330											
PLP1	5354	broad.mit.edu	37	chrX	103041282	103041282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgattcctctagaaaatcCctagccttgttaaggtgctc	9	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103041282	A	A	103041282	1	1	24	0	1	0	0	0	0	0	0	0	12199	638	22	2		2	PLP1	23	103041282	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	706524	103041282	52229278	2337	41331											
NRK	203447	broad.mit.edu	37	chrX	105075047	105075047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttattttacttttttgcagGatccaactggaatattctca	5	7	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105075047	T	T	105075047	3	4	24	1	0	0	0	0	1	0	0	0	10750	1188	41	3	64	3	NRK	23	105075047	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2033765	105075047	50195513	2338	41332											
RBM41	55285	broad.mit.edu	37	chrX	106310851	106310851	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttttgttctttccaaacTctatcaccaatattttccca	2	12	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106310851	C	C	106310851	3	2	24	1	0	0	0	0	1	0	0	0	13243	1551	54	5	106	5	RBM41	23	106310851	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1235804	106310851	48959709	2339	41333											
RBM41	55285	broad.mit.edu	37	chrX	106361905	106361905	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcatcctgagaacgtgcaAtacccaaaccagaaagcaat	7	13	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106361905	G	G	106361905	1	3	24	0	1	0	0	0	0	0	0	0	13243	116	4	5		5	RBM41	23	106361905	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	51054	106361905	48908655	2340	41334											
PRPS1	5631	broad.mit.edu	37	chrX	106871989	106871989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagacctggtaaggacCaagttgggaccctgactaga	13	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106871989	A	A	106871989	1	1	24	0	1	0	0	0	0	0	0	0	12684	609	21	2		2	PRPS1	23	106871989	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	510084	106871989	48398571	2341	41335											
COL4A6	1288	broad.mit.edu	37	chrX	107418907	107418907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaccaggagtaccagcaCgtccagatggtcccattttt	8	12	1	1	rs140519216	byFrequency	TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107418907	A	A	107418907	3	1	24	1	0	0	0	0	1	0	0	0	3727	536	19	3	2333	3	COL4A6	23	107418907	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	546918	107418907	47851653	2342	41336											
COL4A6	1288	broad.mit.edu	37	chrX	107433555	107433555	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcccgaggctgttggtttTctcattccccaggaagcctt	10	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107433555	C	C	107433555	1	2	24	0	1	0	0	0	0	0	0	0	3727	1798	62	5		5	COL4A6	23	107433555	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	14648	107433555	47837005	2343	41337											
COL4A6	1288	broad.mit.edu	37	chrX	107447901	107447901	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaagttcatggttgctatGaaaggatgtttagaagagat	11	2	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107447901	T	T	107447901	1	4	24	0	1	0	0	0	0	0	0	0	3727	1305	45	3		3	COL4A6	23	107447901	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	14346	107447901	47822659	2344	41338											
COL4A5	1287	broad.mit.edu	37	chrX	107864945	107864945	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccttacgtccaaccctcaAtagttttctggttgacatct	6	12	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107864945	G	G	107864945	1	3	24	0	1	0	0	0	0	0	0	0	3726	116	4	5		5	COL4A5	23	107864945	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	417044	107864945	47405615	2345	41339											
COL4A5	1287	broad.mit.edu	37	chrX	107911595	107911595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggattccaggaaatcctggCcttccaggtccaaagggcga	13	11	0	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107911595	A	A	107911595	2	1	24	1	0	0	0	0	0	0	0	1	3726	726	26	3		3	COL4A5	23	107911595	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	46650	107911595	47358965	2346	41340											
COL4A5	1287	broad.mit.edu	37	chrX	107918012	107918013	+	Intron	INS	-	A	A													ttcactggtcaattctttttINStttttttttttttaatgctt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107918013	A	A	107918012	6	5	24	0	1	1	1	0	0	0	0	0	3726	1856	64	0		0	COL4A5	23	107918012	Intron	INS	-	TCGA-05-4427-01A-21D-1855-08	6417	107918012	47352548	2347	41341											
CAPN6	827	broad.mit.edu	37	chrX	110492382	110492382	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttgtcattgggaagcagAgccttgagttattttctggg	13	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110492382	T	T	110492382	1	4	24	0	1	0	0	0	0	0	0	0	2656	319	11	5		5	CAPN6	23	110492382	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	2574370	110492382	44778178	2348	41342											
CAPN6	827	broad.mit.edu	37	chrX	110497565	110497565	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccattggcttgtgccccaGtctcccttgggtcagctggt	11	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110497565	A	A	110497565	2	1	24	1	0	0	0	0	0	0	0	1	2656	1020	36	4		4	CAPN6	23	110497565	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	5183	110497565	44772995	2349	41343											
AMOT	154796	broad.mit.edu	37	chrX	112024109	112024110	+	Intron	DNP	AT	TC	TC													aatcttccttatttactgtcAttacctaggctccccttcca							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	112024110	TC	TC	112024109	1	4	24	0	1	0	0	0	0	0	0	0	582	232	8	5		5	AMOT	23	112024109	Intron	DNP	AT	TCGA-05-4427-01A-21D-1855-08	1526544	112024109	43246451	2350	41344											
AMOT	154796	broad.mit.edu	37	chrX	112058719	112058719	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgctggcactggctgaTaagaagcagaggatggctga	16	7	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112058719	A	A	112058719	3	1	24	1	0	0	0	0	1	0	0	0	582	1406	49	5	2035	5	AMOT	23	112058719	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	34610	112058719	43211841	2351	41345											
LRCH2	57631	broad.mit.edu	37	chrX	114398286	114398286	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcagctattttcctcaaAtcagttacttccttcaaatc	4	11	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114398286	G	G	114398286	2	3	24	1	0	0	0	0	0	0	0	1	9020	98	4	5		5	LRCH2	23	114398286	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	2339567	114398286	40872274	2352	41346											
KLHL13	90293	broad.mit.edu	37	chrX	117033335	117033335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcacatgagctccttttGgaaagtatcatgagtaattc	8	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117033335	T	T	117033335	3	4	24	1	0	0	0	0	1	0	0	0	8440	1357	47	2	467	2	KLHL13	23	117033335	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	2635049	117033335	38237225	2353	41347											
WDR44	54521	broad.mit.edu	37	chrX	117577637	117577637	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagatcgtaatgacttctgGgaaggtattaaaggtaagta	12	3	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117577637	A	A	117577637	4	1	24	1	0	0	0	0	0	1	0	0	17423	1241	43	4	2569	4	WDR44	23	117577637	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	544302	117577637	37692923	2354	41348											
DOCK11	139818	broad.mit.edu	37	chrX	117712558	117712558	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aattgaaaaggtactacaggGaaacattacacactgtgcag	9	7	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117712558	C	C	117712558	3	2	24	1	0	0	0	0	1	0	0	0	4726	1174	41	4	1510	4	DOCK11	23	117712558	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	134921	117712558	37558002	2355	41349											
LONRF3	79836	broad.mit.edu	37	chrX	118147002	118147002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccattctcaataaacagGtttgcagaatatggctgcat	7	9	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118147002	T	T	118147002	2	4	24	1	0	0	0	0	0	0	0	1	8983	1275	44	3		3	LONRF3	23	118147002	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	434444	118147002	37123558	2356	41350											
UBE2A	7319	broad.mit.edu	37	chrX	118717129	118717129	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcccaatagtccagcaaacAgccaggctgctcagctgtac	8	14	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118717129	T	T	118717129	3	4	24	1	0	0	0	0	1	0	0	0	16970	188	7	5	392	5	UBE2A	23	118717129	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	570127	118717129	36553431	2357	41351											
ANKRD58	347454	broad.mit.edu	37	chrX	118893249	118893249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggtcatcaaggtgctgGtgggcgccctgggtgctgac	16	10	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118893249	T	T	118893249	3	4	24	1	0	0	0	0	1	0	0	0	684	1261	44	3	621	3	ANKRD58	23	118893249	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	176120	118893249	36377311	2358	41352											
RPL39	6170	broad.mit.edu	37	chrX	118920824	118920824	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctctaacaagtttggagTtctttctggagagtaaaaaa	8	7	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118920824	C	C	118920824	1	2	24	0	1	0	0	0	0	0	0	0	13703	1740	60	5		5	RPL39	23	118920824	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	27575	118920824	36349736	2359	41353											
AKAP14	158798	broad.mit.edu	37	chrX	119053906	119053906	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtttcttatgtaggtgaCcaccaagcattagttcacag	9	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119053906	T	T	119053906	2	4	24	1	0	0	0	0	0	0	0	1	450	506	18	4		4	AKAP14	23	119053906	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	133082	119053906	36216654	2360	41354											
CUL4B	8450	broad.mit.edu	37	chrX	119678060	119678060	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaagaatcttgataaatcTggagggggaacaaaatgaag	11	4	2	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119678060	A	A	119678060	5	1	24	1	0	0	0	0	0	0	1	0	4091	1594	55	5	1661	5	CUL4B	23	119678060	Splice_Site	SNP	T	TCGA-05-4427-01A-21D-1855-08	624154	119678060	35592500	2361	41355											
MCTS1	28985	broad.mit.edu	37	chrX	119738031	119738031	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggatctgccggacccctgCaaattcaatttctttcccat	8	13	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119738031	G	G	119738031	1	3	24	0	1	0	0	0	0	0	0	0	9495	725	25	4		4	MCTS1	23	119738031	5'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	59971	119738031	35532529	2362	41356											
GRIA3	2892	broad.mit.edu	37	chrX	122562059	122562059	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctcacaaaggcaagttcaCagtgcttttaagggagagtt	10	7	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122562059	G	G	122562059	1	3	24	0	1	0	0	0	0	0	0	0	6835	493	17	4		4	GRIA3	23	122562059	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	2824028	122562059	32708501	2363	41357											
THOC2	57187	broad.mit.edu	37	chrX	122802178	122802178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaagctaaaaatggtaCattaaaatttcataaaatag	7	3	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122802178	A	A	122802178	1	1	24	0	1	0	0	0	0	0	0	0	15988	493	17	3		3	THOC2	23	122802178	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	240119	122802178	32468382	2364	41358											
XIAP	331	broad.mit.edu	37	chrX	123020298	123020298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccaagaaatccatccatGgcagattatgaagcacggat	8	10	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123020298	T	T	123020298	3	4	24	1	0	0	0	0	1	0	0	0	17555	1348	47	2	788	2	XIAP	23	123020298	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	218120	123020298	32250262	2365	41359											
XIAP	331	broad.mit.edu	37	chrX	123040876	123040876	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctaaggcgcctgcaagagGagaagctttgcaaaatctgt	12	8	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123040876	T	T	123040876	4	4	24	1	0	0	0	0	0	1	0	0	17555	1175	41	3	1361	3	XIAP	23	123040876	Nonsense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	20578	123040876	32229684	2366	41360											
ODZ1	10178	broad.mit.edu	37	chrX	123514787	123514787	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctccagaatccgcctccCcccagtgttaccgatgagca	7	16	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123514787	T	T	123514787	3	4	24	1	0	0	0	0	1	0	0	0	10929	623	22	4	404	4	ODZ1	23	123514787	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	473911	123514787	31755773	2367	41361											
ODZ1	10178	broad.mit.edu	37	chrX	123539001	123539001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatttgcccagggtaggGttgactgcccctgccaggat	13	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123539001	T	T	123539001	3	4	24	1	0	0	0	0	1	0	0	0	10929	1252	44	3	2951	3	ODZ1	23	123539001	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	24214	123539001	31731559	2368	41362											
ODZ1	10178	broad.mit.edu	37	chrX	123680902	123680902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttatataacagttgctttGttgacaacagtcaggatcca	7	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123680902	T	T	123680902	3	4	24	1	0	0	0	0	1	0	0	0	10929	1386	48	3	5797	3	ODZ1	23	123680902	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	141901	123680902	31589658	2369	41363											
ODZ1	10178	broad.mit.edu	37	chrX	123697731	123697731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaggagaacagcaaactgCgcactgctgaaatgcctgca	13	10	0	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123697731	T	T	123697731	1	4	24	0	1	0	0	0	0	0	0	0	10929	783	27	4		4	ODZ1	23	123697731	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	16829	123697731	31572829	2370	41364											
ODZ1	10178	broad.mit.edu	37	chrX	124097465	124097465	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcctggttatactcgtgCagggtctccctggagttgta	12	10	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124097465	A	A	124097465	2	1	24	1	0	0	0	0	0	0	0	1	10929	697	25	3		3	ODZ1	23	124097465	Silent	SNP	C	TCGA-05-4427-01A-21D-1855-08	399734	124097465	31173095	2371	41365											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298568	125298568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgaagggagaggccccCcagccacaaagagcttcatc	12	14	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298568	A	A	125298568	3	1	24	1	0	0	0	0	1	0	0	0	4298	623	22	2	55	2	DCAF12L2	23	125298568	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	1201103	125298568	29971992	2372	41366											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298619	125298619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagcagtgggtgtagagcGcattggggaactctcccatg	15	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125298619	T	T	125298619	3	4	24	1	0	0	0	0	1	0	0	0	4298	1087	38	3	106	3	DCAF12L2	23	125298619	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	51	125298619	29971941	2373	41367											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299290	125299290	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggagccgctcacagctacGgtgtcactcagccaggcgac	13	15	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125299290	C	C	125299290	2	2	24	1	0	0	0	0	0	0	0	1	4298	1103	39	4		4	DCAF12L2	23	125299290	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	671	125299290	29971270	2374	41368											
SMARCA1	6594	broad.mit.edu	37	chrX	128649851	128649851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattgaaaaagaactcacCaatgtgatgaagtacttaca	6	6	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128649851	A	A	128649851	1	1	24	0	1	0	0	0	0	0	0	0	14882	609	21	2		2	SMARCA1	23	128649851	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	3350561	128649851	26620709	2375	41369											
OCRL	4952	broad.mit.edu	37	chrX	128722861	128722861	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttgacttaagttgattcAgctggcagcaaccactctgt	8	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128722861	T	T	128722861	5	4	24	1	0	0	0	0	0	0	1	0	10918	202	7	5	2426	5	OCRL	23	128722861	Splice_Site	SNP	A	TCGA-05-4427-01A-21D-1855-08	73010	128722861	26547699	2376	41370											
XPNPEP2	7512	broad.mit.edu	37	chrX	128886270	128886270	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcattgggagatgtgaggatCtggattgggaccagctatac	14	6	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128886270	G	G	128886270	3	3	24	1	0	0	0	0	1	0	0	0	17570	903	32	4	1004	4	XPNPEP2	23	128886270	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	163409	128886270	26384290	2377	41371											
XPNPEP2	7512	broad.mit.edu	37	chrX	128896679	128896679	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctcccagaacctggttActataaggatggagaatttg	11	7	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128896679	C	C	128896679	3	2	24	1	0	0	0	0	1	0	0	0	17570	391	14	5	1747	5	XPNPEP2	23	128896679	Missense_Mutation	SNP	A	TCGA-05-4427-01A-21D-1855-08	10409	128896679	26373881	2378	41372											
IGSF1	3547	broad.mit.edu	37	chrX	130407956	130407956	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacccagaaactgaaaacaGattgcacggtggggctcaga	13	9	1	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130407956	C	C	130407956	1	2	24	0	1	0	0	0	0	0	0	0	7666	957	33	4		4	IGSF1	23	130407956	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1511277	130407956	24862604	2379	41373											
IGSF1	3547	broad.mit.edu	37	chrX	130412980	130412980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggaggctgaattttgcCagcagctttagcaagtgccc	12	9	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130412980	A	A	130412980	1	1	24	0	1	0	0	0	0	0	0	0	7666	609	21	2		2	IGSF1	23	130412980	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	5024	130412980	24857580	2380	41374											
ZNF75D	7626	broad.mit.edu	37	chrX	134425074	134425075	+	Intron	INS	-	T	T													acaaactctaaagaagagaaINStgggctatagtttagtactt							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134425075	T	T	134425074	6	5	24	0	1	1	1	0	0	0	0	0	18263	116	4	0		0	ZNF75D	23	134425074	Intron	INS	-	TCGA-05-4427-01A-21D-1855-08	4012094	134425074	20845486	2381	41375											
DDX26B	203522	broad.mit.edu	37	chrX	134683449	134683449	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttcttcttccatttttcAtgaatcattgttcttgtttt	3	7	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134683449	G	G	134683449	1	3	24	0	1	0	0	0	0	0	0	0	4386	232	8	5		5	DDX26B	23	134683449	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	258375	134683449	20587111	2382	41376											
FHL1	2273	broad.mit.edu	37	chrX	135289128	135289128	+	Intron	DEL	C	-	-													tgggagggctcctgccaccaCccccagcacccctcatggtg							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135289128	-	-	135289128	6	5	24	0	1	1	0	1	0	0	0	0	5935	522	18	0		0	FHL1	23	135289128	Intron	DEL	C	TCGA-05-4427-01A-21D-1855-08	605679	135289128	19981432	2383	41377											
GPR112	139378	broad.mit.edu	37	chrX	135431491	135431491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgacatctagtaataccCaacctctgcttatgacttcc	5	12	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135431491	A	A	135431491	3	1	24	1	0	0	0	0	1	0	0	0	6694	595	21	2	5636	2	GPR112	23	135431491	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	142363	135431491	19839069	2384	41378											
GPR112	139378	broad.mit.edu	37	chrX	135431527	135431527	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcctggaacatacccacaGctgaaggttctcagtttcca	7	13	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135431527	A	A	135431527	3	1	24	1	0	0	0	0	1	0	0	0	6694	971	34	4	5672	4	GPR112	23	135431527	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	36	135431527	19839033	2385	41379											
GPR112	139378	broad.mit.edu	37	chrX	135432390	135432390	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attattcctaagcccacactGgactcccttctaaatataat	3	12	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135432390	C	C	135432390	2	2	24	1	0	0	0	0	0	0	0	1	6694	1335	47	4		4	GPR112	23	135432390	Silent	SNP	G	TCGA-05-4427-01A-21D-1855-08	863	135432390	19838170	2386	41380											
GPR112	139378	broad.mit.edu	37	chrX	135487954	135487954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcactgttcttgttcaaCtgaattctgtgaaatcccaa	6	10	4	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135487954	A	A	135487954	3	1	24	1	0	0	0	0	1	0	0	0	6694	564	20	3	8836	3	GPR112	23	135487954	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	55564	135487954	19782606	2387	41381											
GPR101	83550	broad.mit.edu	37	chrX	136113727	136113727	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaggaagataaccagcacgGttgagcggatgatgccgtgg	16	8	0	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136113727	A	A	136113727	3	1	24	1	0	0	0	0	1	0	0	0	6687	1261	44	4	1422	4	GPR101	23	136113727	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	625773	136113727	19156833	2388	41382											
ZIC3	7547	broad.mit.edu	37	chrX	136652400	136652400	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatccaaaagtagccatGcccttttctcaggatagaaa	7	10	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136652400	T	T	136652400	1	4	24	0	1	0	0	0	0	0	0	0	17806	1334	46	3		3	ZIC3	23	136652400	3'UTR	SNP	G	TCGA-05-4427-01A-21D-1855-08	538673	136652400	18618160	2389	41383											
MCF2	4168	broad.mit.edu	37	chrX	138667243	138667243	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatgaggggcctattttcTtcttcattttcatcataagt	6	9	5	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138667243	G	G	138667243	3	3	24	1	0	0	0	0	1	0	0	0	9471	1606	56	5	86	5	MCF2	23	138667243	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	2014843	138667243	16603317	2390	41384											
MAGEC3	139081	broad.mit.edu	37	chrX	140984185	140984185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctctgcctgccagctgtGccccgaggtgctttctcaca	11	15	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140984185	T	T	140984185	1	4	24	0	1	0	0	0	0	0	0	0	9274	1334	46	3		3	MAGEC3	23	140984185	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	2316942	140984185	14286375	2391	41385											
MAGEC1	9947	broad.mit.edu	37	chrX	140994911	140994911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctcctcagggggaggactCcctgtctcctcactactttc	8	17	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140994911	A	A	140994911	3	1	24	1	0	0	0	0	1	0	0	0	9272	855	30	3	1727	3	MAGEC1	23	140994911	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	10726	140994911	14275649	2392	41386											
MAGEC2	51438	broad.mit.edu	37	chrX	141291236	141291236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggctctcttgagtatcaCaggaaagtaatctttgtact	9	8	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141291236	A	A	141291236	3	1	24	1	0	0	0	0	1	0	0	0	9273	478	17	3	587	3	MAGEC2	23	141291236	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	296325	141291236	13979324	2393	41387											
SPANXN3	139067	broad.mit.edu	37	chrX	142597121	142597121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgccagagaagaacaagGtgaaatcatagggtaggtat	14	4	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142597121	T	T	142597121	1	4	24	0	1	0	0	0	0	0	0	0	15108	1276	44	3		3	SPANXN3	23	142597121	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	1305885	142597121	12673439	2394	41388											
SPANXN2	494119	broad.mit.edu	37	chrX	142795437	142795437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtcctcctcctcttggaCgggattgatggagttctctc	10	12	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142795437	A	A	142795437	3	1	24	1	0	0	0	0	1	0	0	0	15107	536	19	3	305	3	SPANXN2	23	142795437	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	198316	142795437	12475123	2395	41389											
TMEM185A	84548	broad.mit.edu	37	chrX	148690313	148690313	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaatatatgaaatctcaCctctagtgacctgtcatgtc	5	10	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148690313	A	A	148690313	5	1	24	1	0	0	0	0	0	0	1	0	16230	521	18	3	648	3	TMEM185A	23	148690313	Splice_Site	SNP	C	TCGA-05-4427-01A-21D-1855-08	5894876	148690313	6580247	2396	41390											
HSFX2	100130086	broad.mit.edu	37	chrX	148839588	148839588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccatccctcagattccCaacgccgaatgaggaggcac	9	15	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148839588	A	A	148839588	1	1	24	0	1	0	0	0	0	0	0	0	7468	609	21	2		2	HSFX2	23	148839588	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	149275	148839588	6430972	2397	41391											
MTMR1	8776	broad.mit.edu	37	chrX	149867531	149867531	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtcgctatttcagttcttAcataaaatgtgaaggtaacc	7	8	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149867531	T	T	149867531	1	4	24	0	1	0	0	0	0	0	0	0	10032	406	14	5		5	MTMR1	23	149867531	Intron	SNP	A	TCGA-05-4427-01A-21D-1855-08	1027943	149867531	5403029	2398	41392											
CNGA2	1260	broad.mit.edu	37	chrX	150912360	150912360	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgattgtgaggctggccTgctggtagagctggtactga	15	8	0	4			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912360	A	A	150912360	3	1	24	1	0	0	0	0	1	0	0	0	3629	1580	55	5	1407	5	CNGA2	23	150912360	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	1044829	150912360	4358200	2399	41393											
MAGEA5	4104	broad.mit.edu	37	chrX	151283160	151283160	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgaccctgaccacgtgctCcagtactttcaagcagcgag	9	13	1	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151283160	A	A	151283160	1	1	24	0	1	0	0	0	0	0	0	0	9259	870	30	3		3	MAGEA5	23	151283160	3'UTR	SNP	C	TCGA-05-4427-01A-21D-1855-08	370800	151283160	3987400	2400	41394											
GABRQ	55879	broad.mit.edu	37	chrX	151820151	151820151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaactatcttttctacaGtcgaggacctcggcgccagc	8	14	3	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151820151	T	T	151820151	3	4	24	1	0	0	0	0	1	0	0	0	6235	1029	36	3	1094	3	GABRQ	23	151820151	Missense_Mutation	SNP	G	TCGA-05-4427-01A-21D-1855-08	536991	151820151	3450409	2401	41395											
MAGEA12	4111	broad.mit.edu	37	chrX	151896673	151896673	+	RNA	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccagtccacctggtctctCcatgcctcccccaggacagt	7	19	1	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151896673	A	A	151896673	1	1	24	0	1	0	0	0	0	0	0	0	9254	870	30	3		3	MAGEA12	23	151896673	RNA	SNP	C	TCGA-05-4427-01A-21D-1855-08	76522	151896673	3373887	2402	41396											
PNMA5	114824	broad.mit.edu	37	chrX	152159024	152159024	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggggctgctgtcgctaaaAgaccttgcctgcacggtggc	15	11	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152159024	C	C	152159024	2	2	24	1	0	0	0	0	0	0	0	1	12251	59	3	5		5	PNMA5	23	152159024	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	262351	152159024	3111536	2403	41397											
L1CAM	3897	broad.mit.edu	37	chrX	153133918	153133919	+	Intron	DNP	GG	TT	TT													gtgatctgagttgcatctgaGggtaatgcgtgcgtggggaa							TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	153133919	TT	TT	153133918	1	4	24	0	1	0	0	0	0	0	0	0	8660	1015	35	2		2	L1CAM	23	153133918	Intron	DNP	GG	TCGA-05-4427-01A-21D-1855-08	974894	153133918	2136642	2404	41398											
L1CAM	3897	broad.mit.edu	37	chrX	153134360	153134360	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaggcagtgctgccctggaCagccatgtacgtctgattgt	13	10	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153134360	G	G	153134360	3	3	24	1	0	0	0	0	1	0	0	0	8660	478	17	4	2530	4	L1CAM	23	153134360	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	442	153134360	2136200	2405	41399											
RENBP	5973	broad.mit.edu	37	chrX	153200917	153200917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagaggcgcaacccctgCggccccgccctctcccccac	10	23	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153200917	A	A	153200917	1	1	24	0	1	0	0	0	0	0	0	0	13333	783	27	3		3	RENBP	23	153200917	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	66557	153200917	2069643	2406	41400											
HCFC1	3054	broad.mit.edu	37	chrX	153227639	153227639	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggaggggccacgccagtcTagagaagagagacgcaggtg	19	8	1	3			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153227639	A	A	153227639	1	1	24	0	1	0	0	0	0	0	0	0	7057	1537	53	5		5	HCFC1	23	153227639	Intron	SNP	T	TCGA-05-4427-01A-21D-1855-08	26722	153227639	2042921	2407	41401											
EMD	2010	broad.mit.edu	37	chrX	153609423	153609423	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccatccggcctgaaaacCgtgctcctggggctgggctg	15	13	0	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153609423	T	T	153609423	3	4	24	1	0	0	0	0	1	0	0	0	5129	652	23	4	653	4	EMD	23	153609423	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	381784	153609423	1661137	2408	41402											
RPL10	6134	broad.mit.edu	37	chrX	153628874	153628874	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagggttcacattggccaAgttatcatgtccatccgcac	9	13	2	0			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153628874	G	G	153628874	2	3	24	1	0	0	0	0	0	0	0	1	13665	69	3	5		5	RPL10	23	153628874	Silent	SNP	A	TCGA-05-4427-01A-21D-1855-08	19451	153628874	1641686	2409	41403											
ATP6AP1	537	broad.mit.edu	37	chrX	153664008	153664008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaacggtcctttctgaccCgtgtctgtgtgtctgccaga	10	14	3	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153664008	A	A	153664008	1	1	24	0	1	0	0	0	0	0	0	0	1169	667	23	1		1	ATP6AP1	23	153664008	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	35134	153664008	1606552	2410	41404											
PLXNA3	55558	broad.mit.edu	37	chrX	153694059	153694059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctctgcctcaaggctgatCcccgcttcaactgtggctgg	11	15	3	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153694059	A	A	153694059	3	1	24	1	0	0	0	0	1	0	0	0	12216	855	30	3	2447	3	PLXNA3	23	153694059	Missense_Mutation	SNP	C	TCGA-05-4427-01A-21D-1855-08	30051	153694059	1576501	2411	41405											
PLXNA3	55558	broad.mit.edu	37	chrX	153698543	153698543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcgccaccttggcctccGcccagaggttgtcccggcct	10	19	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153698543	T	T	153698543	1	4	24	0	1	0	0	0	0	0	0	0	12216	1102	38	3		3	PLXNA3	23	153698543	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	4484	153698543	1572017	2412	41406											
MPP1	4354	broad.mit.edu	37	chrX	154007498	154007498	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtggagaactgcacgctTggtcgaaggcttcttgtaat	12	8	1	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154007498	G	G	154007498	3	3	24	1	0	0	0	0	1	0	0	0	9827	1812	63	5	49	5	MPP1	23	154007498	Missense_Mutation	SNP	T	TCGA-05-4427-01A-21D-1855-08	308955	154007498	1263062	2413	41407											
F8	2157	broad.mit.edu	37	chrX	154212800	154212800	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattttcaggtgaccaaaaGaggaattgcctactatacat	7	8	2	2			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154212800	C	C	154212800	1	2	24	0	1	0	0	0	0	0	0	0	5393	957	33	4		4	F8	23	154212800	Intron	SNP	G	TCGA-05-4427-01A-21D-1855-08	205302	154212800	1057760	2414	41408											
TMLHE	55217	broad.mit.edu	37	chrX	154754354	154754354	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taactttaaaaaatcagcatCcagaaaacttccttctaaaa	2	9	2	1			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154754354	A	A	154754354	1	1	24	0	1	0	0	0	0	0	0	0	16355	870	30	3		3	TMLHE	23	154754354	Intron	SNP	C	TCGA-05-4427-01A-21D-1855-08	541554	154754354	516206	2415	41409											
SLC2A5	6518	broad.mit.edu	37	chr1	9129448	9129448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccaccataatccctccCaacacagagttccctctgca	3	20	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9129448	A	A	9129448	1	1	25	0	1	0	0	0	0	0	0	0	14662	609	21	2		2	SLC2A5	1	9129448	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08		9129448	240121173	1	41410											
HNRNPR	10236	broad.mit.edu	37	chr1	23648100	23648100	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaaaaagtctgttgttTgccacagaaatgcacactcc	6	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23648100	A	A	23648100	2	1	25	1	0	0	0	0	0	0	0	1	7339	1799	63	5		5	HNRNPR	1	23648100	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	14518652	23648100	225602521	2	41411											
TCEA3	6920	broad.mit.edu	37	chr1	23743829	23743829	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcaagccctttttccttcTtctttgccttttctctttcc	2	15	4	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23743829	A	A	23743829	3	1	25	1	0	0	0	0	1	0	0	0	15791	1609	56	5	785	5	TCEA3	1	23743829	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	95729	23743829	225506792	3	41412											
HMGCL	3155	broad.mit.edu	37	chr1	24140887	24140887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttttgtttgagatggaGtcttgctttgttgcccaggc	11	7	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24140887	T	T	24140887	1	4	25	0	1	0	0	0	0	0	0	0	7296	1044	36	3		3	HMGCL	1	24140887	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	397058	24140887	225109734	4	41413											
CNR2	1269	broad.mit.edu	37	chr1	24201701	24201701	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtaggaaggtggatagCgcaggcagaggtatcggtca	16	6	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24201701	T	T	24201701	3	4	25	1	0	0	0	0	1	0	0	0	3664	768	27	4	679	4	CNR2	1	24201701	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	60814	24201701	225048920	5	41414											
SRRM1	10250	broad.mit.edu	37	chr1	24993263	24993263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacgccatcacacacacaCaaaaaaaagaaaaaaaatta	4	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24993263	A	A	24993263	1	1	25	0	1	0	0	0	0	0	0	0	15286	493	17	3		3	SRRM1	1	24993263	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	791562	24993263	224257358	6	41415											
CCDC21	64793	broad.mit.edu	37	chr1	26566285	26566285	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgtgattgatggccatgcAggagaaatatccaactgagg	12	7	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26566285	T	T	26566285	3	4	25	1	0	0	0	0	1	0	0	0	2823	188	7	5	13	5	CCDC21	1	26566285	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	1573022	26566285	222684336	7	41416											
WDTC1	23038	broad.mit.edu	37	chr1	27627736	27627736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatggtgaccactatgatGccctgagggactgcctcaag	14	10	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27627736	T	T	27627736	3	4	25	1	0	0	0	0	1	0	0	0	17469	1319	46	3	1295	3	WDTC1	1	27627736	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1061451	27627736	221622885	8	41417											
RSPO1	284654	broad.mit.edu	37	chr1	38095323	38095323	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggccaccacacacagcCcaagccgcatagtcacgcgc	9	19	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38095323	A	A	38095323	3	1	25	1	0	0	0	0	1	0	0	0	13820	623	22	2	800	2	RSPO1	1	38095323	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	10467587	38095323	211155298	9	41418											
TOE1	114034	broad.mit.edu	37	chr1	45808733	45808733	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcctggagcctctttctAagcctctttcccacccctag	7	16	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45808733	G	G	45808733	1	3	25	0	1	0	0	0	0	0	0	0	16472	377	13	5		5	TOE1	1	45808733	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	7713410	45808733	203441888	10	41419											
LRRC41	10489	broad.mit.edu	37	chr1	46746874	46746874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggttgtcccgctggcttGggtggtcaacacgaatagag	15	9	1	1	rs140475848		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46746874	T	T	46746874	3	4	25	1	0	0	0	0	1	0	0	0	9086	1348	47	2	783	2	LRRC41	1	46746874	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	938141	46746874	202503747	11	41420											
DMRTB1	63948	broad.mit.edu	37	chr1	53930284	53930284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaactctctctcctctccGcctctctgctgtgtgtgccg	8	17	4	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53930284	T	T	53930284	1	4	25	0	1	0	0	0	0	0	0	0	4630	1102	38	3		3	DMRTB1	1	53930284	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	7183410	53930284	195320337	12	41421											
JAK1	3716	broad.mit.edu	37	chr1	65309979	65309979	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcactgcagccagaacagTgagccaatgaaggaactact	10	10	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65309979	A	A	65309979	1	1	25	0	1	0	0	0	0	0	0	0	8007	1711	59	5		5	JAK1	1	65309979	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	11379695	65309979	183940642	13	41422											
AK3L1	205	broad.mit.edu	37	chr1	65656341	65656341	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactaagagttggtaagcttTgtgtttgggaaattttcttg	11	3	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65656341	A	A	65656341	1	1	25	0	1	0	0	0	0	0	0	0	442	1827	63	5		5	AK3L1	1	65656341	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	346362	65656341	183594280	14	41423											
SGIP1	84251	broad.mit.edu	37	chr1	67155846	67155846	+	Intron	DEL	T	-	-													ctgcaacctgtgtatctaacTtttcatctcttttcttctcc							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67155846	-	-	67155846	6	5	25	0	1	1	0	1	0	0	0	0	14319	1624	56	0		0	SGIP1	1	67155846	Intron	DEL	T	TCGA-05-4430-01A-02D-1265-08	1499505	67155846	182094775	15	41424											
WDR78	79819	broad.mit.edu	37	chr1	67340425	67340425	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacccttggcttagcatttGaattacagaaacaatgtaga	8	7	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67340425	C	C	67340425	1	2	25	0	1	0	0	0	0	0	0	0	17455	1305	45	4		4	WDR78	1	67340425	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	184579	67340425	181910196	16	41425											
SLC44A5	204962	broad.mit.edu	37	chr1	75708683	75708683	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaatttttctgggcacTtggagacacagatctgtgaa	9	6	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75708683	A	A	75708683	3	1	25	1	0	0	0	0	1	0	0	0	14753	1609	56	5	1979	5	SLC44A5	1	75708683	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	8368258	75708683	173541938	17	41426											
PTGFR	5737	broad.mit.edu	37	chr1	79002052	79002052	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaattataggattgaaaaGgctgcatcaactaatttccg	7	6	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79002052	C	C	79002052	1	2	25	0	1	0	0	0	0	0	0	0	12855	1015	35	4		4	PTGFR	1	79002052	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3293369	79002052	170248569	18	41427											
COL24A1	255631	broad.mit.edu	37	chr1	86362043	86362043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatcaatgattaccttgGcaccttgtataccttgttcc	5	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86362043	T	T	86362043	3	4	25	1	0	0	0	0	1	0	0	0	3715	1203	42	3	2444	3	COL24A1	1	86362043	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	7359991	86362043	162888578	19	41428											
AMY2B	280	broad.mit.edu	37	chr1	104116869	104116869	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaatgttactttttcctAattttctactaggtaattga	5	6	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104116869	G	G	104116869	1	3	25	0	1	0	0	0	0	0	0	0	595	377	13	5		5	AMY2B	1	104116869	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	17754826	104116869	145133752	20	41429											
NTNG1	22854	broad.mit.edu	37	chr1	107937773	107937773	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgtctctcctctgccCaggtgcaagtgtaatctcca	7	14	4	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107937773	T	T	107937773	1	4	25	0	1	0	0	0	0	0	0	0	10799	609	21	4		4	NTNG1	1	107937773	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3820904	107937773	141312848	21	41430											
VAV3	10451	broad.mit.edu	37	chr1	108507486	108507486	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcgcactgcttccacggCtccatgcccgacggctccgg	12	18	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108507486	T	T	108507486	2	4	25	1	0	0	0	0	0	0	0	1	17260	796	28	4		4	VAV3	1	108507486	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	569713	108507486	140743135	22	41431											
WARS2	10352	broad.mit.edu	37	chr1	119576771	119576771	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catacttcttgttgaaacctTgtgctagatcctgaactagt	7	9	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119576771	A	A	119576771	3	1	25	1	0	0	0	0	1	0	0	0	17377	1812	63	5	538	5	WARS2	1	119576771	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	11069285	119576771	129673850	23	41432											
NBPF10	100132406	broad.mit.edu	37	chr1	145304772	145304772	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtgatgggtttctaaacaGatatcagggagtttgtttgt	12	4	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145304772	T	T	145304772	1	4	25	0	1	0	0	0	0	0	0	0	10287	957	33	3		3	NBPF10	1	145304772	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	25728001	145304772	103945849	24	41433											
FMO5	2330	broad.mit.edu	37	chr1	146676462	146676462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaaaagtgtttcgctcCctccttgagcatctgggcga	10	11	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146676462	A	A	146676462	1	1	25	0	1	0	0	0	0	0	0	0	6016	638	22	2		2	FMO5	1	146676462	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1371690	146676462	102574159	25	41434											
FLG2	388698	broad.mit.edu	37	chr1	152326733	152326733	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatgctgtccaaaacttgTggttggacctgagccagact	10	11	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152326733	C	C	152326733	3	2	25	1	0	0	0	0	1	0	0	0	5980	1696	59	5	3650	5	FLG2	1	152326733	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	5650271	152326733	96923888	26	41435											
FLG2	388698	broad.mit.edu	37	chr1	152329975	152329975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcttctttgaccctgaaGctttgcagtattctttgctg	8	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152329975	T	T	152329975	3	4	25	1	0	0	0	0	1	0	0	0	5980	971	34	3	6892	3	FLG2	1	152329975	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3242	152329975	96920646	27	41436											
CD1C	911	broad.mit.edu	37	chr1	158261156	158261156	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctttggattaactcgggaGattcaagaccatgcaagtca	9	9	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158261156	A	A	158261156	2	1	25	1	0	0	0	0	0	0	0	1	3006	933	33	4		4	CD1C	1	158261156	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	5931181	158261156	90989465	28	41437											
CD1E	913	broad.mit.edu	37	chr1	158325701	158325701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtctcaggattctaccCaaagcccgtgtgggtgatgt	11	11	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325701	A	A	158325701	3	1	25	1	0	0	0	0	1	0	0	0	3008	594	21	2	724	2	CD1E	1	158325701	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	64545	158325701	90924920	29	41438											
OR10R2	343406	broad.mit.edu	37	chr1	158450421	158450421	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctgaagattccctcagctGagggcagacggaaagcgttt	12	10	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450421	T	T	158450421	4	4	25	1	0	0	0	0	0	1	0	0	11011	1291	45	3	756	3	OR10R2	1	158450421	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	124720	158450421	90800200	30	41439											
FCRLA	84824	broad.mit.edu	37	chr1	161682848	161682848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtcagacttcactcttGtatgtgcctcctgccccata	7	14	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161682848	T	T	161682848	1	4	25	0	1	0	0	0	0	0	0	0	5857	1392	48	3		3	FCRLA	1	161682848	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3232427	161682848	87567773	31	41440											
RGS5	8490	broad.mit.edu	37	chr1	163138072	163138073	+	Missense_Mutation	DNP	GG	TT	TT													gggtcttggctggtttctctGgcttctcattgtacggaatg							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	163138073	TT	TT	163138072	3	4	25	1	0	0	0	0	1	0	0	0	13417	1348	47	2	430	2	RGS5	1	163138072	Missense_Mutation	DNP	GG	TCGA-05-4430-01A-02D-1265-08	1455224	163138072	86112549	32	41441											
ILDR2	387597	broad.mit.edu	37	chr1	166905836	166905836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtactcacaggcttgaGggcagcagcaggaatctggg	14	10	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166905836	T	T	166905836	3	4	25	1	0	0	0	0	1	0	0	0	7780	1000	35	2	1248	2	ILDR2	1	166905836	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3767764	166905836	82344785	33	41442											
GPA33	10223	broad.mit.edu	37	chr1	167025041	167025041	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtacagatgtagtaacccGatgtgtctgtggagatattc	12	6	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167025041	T	T	167025041	4	4	25	1	0	0	0	0	0	1	0	0	6651	1059	37	3	354	3	GPA33	1	167025041	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	119205	167025041	82225580	34	41443											
BRP44	25874	broad.mit.edu	37	chr1	167889140	167889140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaacagagcgagacccCgtctcaaaaaaaaaaaaaat	8	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167889140	A	A	167889140	1	1	25	0	1	0	0	0	0	0	0	0	1527	667	23	1		1	BRP44	1	167889140	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	864099	167889140	81361481	35	41444											
TNR	7143	broad.mit.edu	37	chr1	175372256	175372256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacccttgccaaacacccCagagagttcccctgcctacc	5	20	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372256	A	A	175372256	1	1	25	0	1	0	0	0	0	0	0	0	16461	609	21	2		2	TNR	1	175372256	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	7483116	175372256	73878365	36	41445											
PAPPA2	60676	broad.mit.edu	37	chr1	176668684	176668684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccatttgccagtggtttGcccgtggtggtgacacattc	11	13	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176668684	T	T	176668684	3	4	25	1	0	0	0	0	1	0	0	0	11527	1310	46	3	3274	3	PAPPA2	1	176668684	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1296428	176668684	72581937	37	41446											
PAPPA2	60676	broad.mit.edu	37	chr1	176680889	176680889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaagagagaacaactttGctttgagctggagagtttca	11	6	1	5			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176680889	T	T	176680889	1	4	25	0	1	0	0	0	0	0	0	0	11527	1334	46	3		3	PAPPA2	1	176680889	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	12205	176680889	72569732	38	41447											
C1orf49	84066	broad.mit.edu	37	chr1	178482171	178482171	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtggtgacgctctggaCcaccatgtgggtcctggcat	14	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178482171	A	A	178482171	1	1	25	0	1	0	0	0	0	0	0	0	2063	522	18	3		3	C1orf49	1	178482171	5'Flank	SNP	C	TCGA-05-4430-01A-02D-1265-08	1801282	178482171	70768450	39	41448											
HMCN1	83872	broad.mit.edu	37	chr1	185931617	185931617	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaacatcaagataaattggCatttttctacatacgtatat	4	7	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185931617	T	T	185931617	1	4	25	0	1	0	0	0	0	0	0	0	7287	725	25	4		4	HMCN1	1	185931617	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	7449446	185931617	63319004	40	41449											
CFHR2	3080	broad.mit.edu	37	chr1	196928066	196928066	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tataacataaaattaaagtgGacaaaccaacaaaagcttta	4	6	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196928066	A	A	196928066	4	1	25	1	0	0	0	0	0	1	0	0	3315	1183	41	4	687	4	CFHR2	1	196928066	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	10996449	196928066	52322555	41	41450											
LHX9	56956	broad.mit.edu	37	chr1	197898182	197898182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggaaccttttgcggcaGgagaatgggggtgttgataa	16	4	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197898182	T	T	197898182	3	4	25	1	0	0	0	0	1	0	0	0	8849	991	35	2	1037	2	LHX9	1	197898182	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	970116	197898182	51352439	42	41451											
PKP1	5317	broad.mit.edu	37	chr1	201286626	201286626	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggtctgaaaaaaaaaatCacctttgagtagagaataac	7	5	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201286626	T	T	201286626	1	4	25	0	1	0	0	0	0	0	0	0	12079	841	29	4		4	PKP1	1	201286626	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3388444	201286626	47963995	43	41452											
REN	5972	broad.mit.edu	37	chr1	204126245	204126245	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaacaagacacaaatggAcacccctcactcttgggttg	9	11	2	2	rs11571087	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204126245	G	G	204126245	1	3	25	0	1	0	0	0	0	0	0	0	13332	290	10	5		5	REN	1	204126245	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2839619	204126245	45124376	44	41453											
SLC26A9	115019	broad.mit.edu	37	chr1	205897189	205897189	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggggaacctgccgaggagCcaggaaggaggcagaaccca	17	10	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205897189	T	T	205897189	1	4	25	0	1	0	0	0	0	0	0	0	14638	754	26	4		4	SLC26A9	1	205897189	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1770944	205897189	43353432	45	41454											
USH2A	7399	broad.mit.edu	37	chr1	216019167	216019167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttagaatctggactcaccCccatcgcaagtggttgcatg	9	12	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216019167	A	A	216019167	2	1	25	1	0	0	0	0	0	0	0	1	17162	637	22	2		2	USH2A	1	216019167	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	10121978	216019167	33231454	46	41455											
HHIPL2	79802	broad.mit.edu	37	chr1	222717100	222717100	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtccaggaagggttgctcCaggcgactcccatcagggag	15	11	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222717100	G	G	222717100	2	3	25	1	0	0	0	0	0	0	0	1	7161	581	21	4		4	HHIPL2	1	222717100	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	6697933	222717100	26533521	47	41456											
ITPKB	3707	broad.mit.edu	37	chr1	226836376	226836376	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagagctgtgtctacctgCgtgtcctgccagctggatcc	14	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226836376	T	T	226836376	3	4	25	1	0	0	0	0	1	0	0	0	7988	768	27	4	835	4	ITPKB	1	226836376	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4119276	226836376	22414245	48	41457											
PRSS38	339501	broad.mit.edu	37	chr1	228033666	228033666	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctttctagggcgactccggGggcccacttgtctgtgaatt	12	12	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228033666	C	C	228033666	2	2	25	1	0	0	0	0	0	0	0	1	12733	1219	43	4		4	PRSS38	1	228033666	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1197290	228033666	21216955	49	41458											
ERO1LB	56605	broad.mit.edu	37	chr1	236388359	236388359	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaccccgtgtcccaatcgaGaactttttacctttagtgac	6	13	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236388359	T	T	236388359	1	4	25	0	1	0	0	0	0	0	0	0	5282	957	33	3		3	ERO1LB	1	236388359	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	8354693	236388359	12862262	50	41459											
RYR2	6262	broad.mit.edu	37	chr1	237494303	237494303	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaagtacccaatttatgtaGacttgtagtattttaatgag	8	5	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237494303	T	T	237494303	1	4	25	0	1	0	0	0	0	0	0	0	13880	957	33	3		3	RYR2	1	237494303	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1105944	237494303	11756318	51	41460											
RYR2	6262	broad.mit.edu	37	chr1	237666857	237666857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattgcagtcatgctgataCacagtggctttacacttgga	10	8	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237666857	A	A	237666857	1	1	25	0	1	0	0	0	0	0	0	0	13880	493	17	3		3	RYR2	1	237666857	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	172554	237666857	11583764	52	41461											
RYR2	6262	broad.mit.edu	37	chr1	237850810	237850810	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatttcactatttggtaagGagacccttgaaaaaatacaa	8	6	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237850810	T	T	237850810	1	4	25	0	1	0	0	0	0	0	0	0	13880	1189	41	3		3	RYR2	1	237850810	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	183953	237850810	11399811	53	41462											
RYR2	6262	broad.mit.edu	37	chr1	237948095	237948095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccgccctgccctccgaGgatctgaccgacttaaagga	11	14	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237948095	T	T	237948095	3	4	25	1	0	0	0	0	1	0	0	0	13880	991	35	2	13441	2	RYR2	1	237948095	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	97285	237948095	11302526	54	41463											
FMN2	56776	broad.mit.edu	37	chr1	240307011	240307012	+	Intron	INS	-	A	A													agacccagtccaagaggaagINSccaacgagcataagagtcct							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240307012	A	A	240307011	6	5	25	0	1	1	1	0	0	0	0	0	6008	986	34	0		0	FMN2	1	240307011	Intron	INS	-	TCGA-05-4430-01A-02D-1265-08	2358916	240307011	8943610	55	41464											
OR1C1	26188	broad.mit.edu	37	chr1	247921322	247921322	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attctggcggtgtaatgtaaGgggtggcaaatcgccacata	13	7	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247921322	A	A	247921322	2	1	25	1	0	0	0	0	0	0	0	1	11046	987	35	4		4	OR1C1	1	247921322	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	7614311	247921322	1329299	56	41465											
OR2T8	343172	broad.mit.edu	37	chr1	248084558	248084558	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccactgtgcccaaaatggCggctgactacttgaccggaa	10	13	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248084558	G	G	248084558	3	3	25	1	0	0	0	0	1	0	0	0	11124	768	27	4	241	4	OR2T8	1	248084558	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	163236	248084558	1166063	57	41466											
OR2L13	284521	broad.mit.edu	37	chr1	248167377	248167377	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgaaaatgtagaaacaCtttctgcctaaggtttcagg	9	7	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248167377	G	G	248167377	1	3	25	0	1	0	0	0	0	0	0	0	11100	580	20	4		4	OR2L13	1	248167377	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	82819	248167377	1083244	58	41467											
OR2L13	284521	broad.mit.edu	37	chr1	248247659	248247659	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccggtcaagtagtcagccGccattttgggcacagtggtg	13	10	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248247659	C	C	248247659	1	2	25	0	1	0	0	0	0	0	0	0	11100	1102	38	4		4	OR2L13	1	248247659	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	80282	248247659	1002962	59	41468											
OR2M5	127059	broad.mit.edu	37	chr1	248309050	248309050	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttgaaaaggttcttttcAtctgctgtatagtaatgatt	7	4	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248309050	T	T	248309050	3	4	25	1	0	0	0	0	1	0	0	0	11107	217	8	5	603	5	OR2M5	1	248309050	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	61391	248309050	941571	60	41469											
OR2G6	391211	broad.mit.edu	37	chr1	248685264	248685264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctctatgtggccatggGgttgggctcgtctgagtgta	15	9	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248685264	T	T	248685264	3	4	25	1	0	0	0	0	1	0	0	0	11094	1232	43	2	319	2	OR2G6	1	248685264	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	376214	248685264	565357	61	41470											
SH3BP5L	80851	broad.mit.edu	37	chr1	249110823	249110823	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtattcagtttcctcgcCgactcctgtaggatcctccg	9	13	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249110823	A	A	249110823	2	1	25	1	0	0	0	0	0	0	0	1	14361	639	23	1		1	SH3BP5L	1	249110823	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	425559	249110823	139798	62	41471											
SMC6	79677	broad.mit.edu	37	chr2	17912967	17912967	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctaattctttttgagtatttCctaatattttataagaaatg	4	4	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17912967	G	G	17912967	1	3	25	0	1	0	0	0	0	0	0	0	14901	870	30	4		4	SMC6	2	17912967	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08		17912967	225286406	63	41472											
APOB	338	broad.mit.edu	37	chr2	21235206	21235206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactctccattgagccggcCagtgttaggatccctctgac	11	13	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21235206	A	A	21235206	3	1	25	1	0	0	0	0	1	0	0	0	787	594	21	2	9173	2	APOB	2	21235206	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3322239	21235206	221964167	64	41473											
ASXL2	55252	broad.mit.edu	37	chr2	25967101	25967101	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgcccttcaccaccctctCctggaccttgtccaccccct	4	22	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25967101	T	T	25967101	3	4	25	1	0	0	0	0	1	0	0	0	1071	855	30	4	2206	4	ASXL2	2	25967101	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4731895	25967101	217232272	65	41474											
OTOF	9381	broad.mit.edu	37	chr2	26697098	26697098	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctaaggaccacgcccccagCtttggtcaggatgggtagga	13	12	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26697098	G	G	26697098	1	3	25	0	1	0	0	0	0	0	0	0	11397	812	28	4		4	OTOF	2	26697098	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	729997	26697098	216502275	66	41475											
CIB4	130106	broad.mit.edu	37	chr2	26864011	26864011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttcttccaatgtggccCagggaagccaaaaattggac	9	10	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26864011	A	A	26864011	1	1	25	0	1	0	0	0	0	0	0	0	3454	609	21	2		2	CIB4	2	26864011	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	166913	26864011	216335362	67	41476											
GTF3C2	2976	broad.mit.edu	37	chr2	27565628	27565628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagtcttctctctccaaCatctgccccaccctgatccc	3	20	5	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27565628	A	A	27565628	1	1	25	0	1	0	0	0	0	0	0	0	6938	493	17	3		3	GTF3C2	2	27565628	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	701617	27565628	215633745	68	41477											
SRD5A2	6716	broad.mit.edu	37	chr2	31806000	31806000	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgccggtggccgctgcCctcccagaagagagcgcggc	14	17	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31806000	A	A	31806000	1	1	25	0	1	0	0	0	0	0	0	0	15257	638	22	2		2	SRD5A2	2	31806000	5'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	4240372	31806000	211393373	69	41478											
SPAST	6683	broad.mit.edu	37	chr2	32372239	32372239	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcccttcaacaatttcaActgcaaaatgtatgtatttt	4	8	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32372239	G	G	32372239	1	3	25	0	1	0	0	0	0	0	0	0	15113	58	2	5		5	SPAST	2	32372239	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	566239	32372239	210827134	70	41479											
RASGRP3	25780	broad.mit.edu	37	chr2	33747045	33747045	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctatgactggatgagaaGagtcacacagaggaaaaaag	11	6	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33747045	A	A	33747045	3	1	25	1	0	0	0	0	1	0	0	0	13184	942	33	4	410	4	RASGRP3	2	33747045	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1374806	33747045	209452328	71	41480											
LRPPRC	10128	broad.mit.edu	37	chr2	44204192	44204192	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaatctctggtatgtcacCtgtcaatgaaatgggccagt	9	9	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44204192	T	T	44204192	5	4	25	1	0	0	0	0	0	0	1	0	9052	695	24	4	3729	4	LRPPRC	2	44204192	Splice_Site	SNP	C	TCGA-05-4430-01A-02D-1265-08	10457147	44204192	198995181	72	41481											
AFTPH	54812	broad.mit.edu	37	chr2	64779295	64779295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtacctagtcctgctgaGgaatttgcagattttgccac	9	10	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64779295	T	T	64779295	3	4	25	1	0	0	0	0	1	0	0	0	364	991	35	2	689	2	AFTPH	2	64779295	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	20575103	64779295	178420078	73	41482											
CCT7	10574	broad.mit.edu	37	chr2	73478598	73478598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggttcagggtttgggcGggtggggctagattctgaat	18	6	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73478598	T	T	73478598	1	4	25	0	1	0	0	0	0	0	0	0	2989	1131	39	1		1	CCT7	2	73478598	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	8699303	73478598	169720775	74	41483											
MOGS	7841	broad.mit.edu	37	chr2	74688860	74688860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacatagccaagagcatctaCatactgcagttgaggttggg	12	8	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74688860	T	T	74688860	3	4	25	1	0	0	0	0	1	0	0	0	9791	478	17	4	461	4	MOGS	2	74688860	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1210262	74688860	168510513	75	41484											
REG1B	5968	broad.mit.edu	37	chr2	79313697	79313697	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggatatactgagaccttccAgaggatgtaacagaaaaagg	12	6	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79313697	G	G	79313697	1	3	25	0	1	0	0	0	0	0	0	0	13319	203	7	5		5	REG1B	2	79313697	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	4624837	79313697	163885676	76	41485											
LRRTM1	347730	broad.mit.edu	37	chr2	80530299	80530299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaagtcgttgtgctcgaGgtgcagctcggtgagcttaa	14	9	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80530299	T	T	80530299	3	4	25	1	0	0	0	0	1	0	0	0	9126	1000	35	2	926	2	LRRTM1	2	80530299	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1216602	80530299	162669074	77	41486											
MGAT4A	11320	broad.mit.edu	37	chr2	99291448	99291448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacataatagtccaaaaCacatttaacagcagtagtac	5	9	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99291448	A	A	99291448	1	1	25	0	1	0	0	0	0	0	0	0	9638	493	17	3		3	MGAT4A	2	99291448	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	18761149	99291448	143907925	78	41487											
TBC1D8	11138	broad.mit.edu	37	chr2	101666806	101666806	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttgtacataagggatggGcacagcttatgggtcccccg	12	11	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101666806	A	A	101666806	1	1	25	0	1	0	0	0	0	0	0	0	15747	1218	42	4		4	TBC1D8	2	101666806	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	2375358	101666806	141532567	79	41488											
IL18RAP	8807	broad.mit.edu	37	chr2	103053583	103053583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgaccttcttcctccctGttcaaatttgtaagattttt	5	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103053583	T	T	103053583	1	4	25	0	1	0	0	0	0	0	0	0	7718	1392	48	3		3	IL18RAP	2	103053583	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1386777	103053583	140145790	80	41489											
TMEM87B	84910	broad.mit.edu	37	chr2	112856327	112856327	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatttgttgatcaccttctAtagtgtcaagaacacgttta	8	7	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112856327	G	G	112856327	1	3	25	0	1	0	0	0	0	0	0	0	16334	464	16	5		5	TMEM87B	2	112856327	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	9802744	112856327	130343046	81	41490											
DPP10	57628	broad.mit.edu	37	chr2	116593847	116593847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatggtgagtactttctaCagactgacctagtataatgt	9	6	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116593847	A	A	116593847	1	1	25	0	1	0	0	0	0	0	0	0	4767	493	17	3		3	DPP10	2	116593847	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3737520	116593847	126605526	82	41491											
GYPC	2995	broad.mit.edu	37	chr2	127447807	127447807	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagtcttcctctctgacctCagattcttgtcctctgttca	6	13	6	3	rs56131613		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127447807	A	A	127447807	1	1	25	0	1	0	0	0	0	0	0	0	6975	841	29	3		3	GYPC	2	127447807	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	10853960	127447807	115751566	83	41492											
GYPC	2995	broad.mit.edu	37	chr2	127453785	127453785	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaatacaccccatcgcCcagcacccctgctgatacca	6	17	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127453785	A	A	127453785	1	1	25	0	1	0	0	0	0	0	0	0	6975	638	22	2		2	GYPC	2	127453785	3'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	5978	127453785	115745588	84	41493											
IMP4	92856	broad.mit.edu	37	chr2	131100274	131100274	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcggtcctaagtcacgtgtGacattctgtatccagtctat	9	10	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131100274	A	A	131100274	1	1	25	0	1	0	0	0	0	0	0	0	7790	1305	45	4		4	IMP4	2	131100274	5'Flank	SNP	G	TCGA-05-4430-01A-02D-1265-08	3646489	131100274	112099099	85	41494											
NCKAP5	344148	broad.mit.edu	37	chr2	133636363	133636363	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacacacattttgagatcaGattaagggaatcccaactag	7	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133636363	T	T	133636363	1	4	25	0	1	0	0	0	0	0	0	0	10318	957	33	3		3	NCKAP5	2	133636363	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	2536089	133636363	109563010	86	41495											
LRP1B	53353	broad.mit.edu	37	chr2	140992421	140992421	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcgctgtgtgtggaagcttGaaagcactgggtcctccccc	14	12	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140992421	T	T	140992421	3	4	25	1	0	0	0	0	1	0	0	0	9042	1281	45	3	214	3	LRP1B	2	140992421	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	7356058	140992421	102206952	87	41496											
LRP1B	53353	broad.mit.edu	37	chr2	141739653	141739653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataaagaaataaatagccCtttaaggagggtgtagtggt	11	4	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141739653	A	A	141739653	1	1	25	0	1	0	0	0	0	0	0	0	9042	696	24	2		2	LRP1B	2	141739653	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	747232	141739653	101459720	88	41497											
NEB	4703	broad.mit.edu	37	chr2	152527689	152527689	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccacctccagggaaccaaTagggatccatccgatgccct	8	16	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152527689	C	C	152527689	3	2	25	1	0	0	0	0	1	0	0	0	10397	1406	49	5	21912	5	NEB	2	152527689	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	10788036	152527689	90671684	89	41498											
TBR1	10716	broad.mit.edu	37	chr2	162274750	162274750	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccggattcccccaacactGgggctcactggatgcgccaa	10	15	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162274750	A	A	162274750	3	1	25	1	0	0	0	0	1	0	0	0	15769	1348	47	4	896	4	TBR1	2	162274750	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	9747061	162274750	80924623	90	41499											
KCNH7	90134	broad.mit.edu	37	chr2	163374483	163374483	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgggctgtatcaaagcttTtgtgtcatctgcttcagagg	12	8	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163374483	C	C	163374483	3	2	25	1	0	0	0	0	1	0	0	0	8107	1850	64	5	3059	5	KCNH7	2	163374483	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	1099733	163374483	79824890	91	41500											
SCN3A	6328	broad.mit.edu	37	chr2	166019136	166019136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaatgtcccatttgaatcCattgtgccattaaagtagga	7	8	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166019136	A	A	166019136	3	1	25	1	0	0	0	0	1	0	0	0	14031	594	21	2	5189	2	SCN3A	2	166019136	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2644653	166019136	77180237	92	41501											
XIRP2	129446	broad.mit.edu	37	chr2	168102744	168102744	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatggtgaacctactttcCaaaagggactgtactgaaag	9	7	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168102744	A	A	168102744	2	1	25	1	0	0	0	0	0	0	0	1	17557	581	21	2		2	XIRP2	2	168102744	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	2083608	168102744	75096629	93	41502											
LRP2	4036	broad.mit.edu	37	chr2	170032886	170032886	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatgtctgtccacgggctaGagaggcactgaggagagggg	17	8	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170032886	T	T	170032886	1	4	25	0	1	0	0	0	0	0	0	0	9043	957	33	3		3	LRP2	2	170032886	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1930142	170032886	73166487	94	41503											
GORASP2	26003	broad.mit.edu	37	chr2	171811347	171811347	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttttaccaaaacgagtcaCgtgtttcagtgctactatat	7	8	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171811347	T	T	171811347	1	4	25	0	1	0	0	0	0	0	0	0	6640	551	19	4		4	GORASP2	2	171811347	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1778461	171811347	71388026	95	41504											
ZAK	51776	broad.mit.edu	37	chr2	174052169	174052169	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcattttatcagtcatggAagaataagacatgtgaatta	7	4	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174052169	C	C	174052169	1	2	25	0	1	0	0	0	0	0	0	0	17639	261	9	5		5	ZAK	2	174052169	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2240822	174052169	69147204	96	41505											
TTN	7273	broad.mit.edu	37	chr2	179397726	179397726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctctggtacatcataaGgcatccggagttttctctcc	10	11	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179397726	T	T	179397726	3	4	25	1	0	0	0	0	1	0	0	0	16861	1000	35	2	4383	2	TTN	2	179397726	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	5345557	179397726	63801647	97	41506											
TTN	7273	broad.mit.edu	37	chr2	179412988	179412988	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatttgctagtatcaacaAcatcaagtctcctaggtgga	9	8	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179412988	T	T	179412988	3	4	25	1	0	0	0	0	1	0	0	0	16861	43	2	5	14710	5	TTN	2	179412988	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	15262	179412988	63786385	98	41507											
TTN	7273	broad.mit.edu	37	chr2	179459084	179459084	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatacccagctcatccttGcaagtaattggtttggtgca	8	11	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179459084	T	T	179459084	4	4	25	1	0	0	0	0	0	1	0	0	16861	1311	46	3	50110	3	TTN	2	179459084	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	46096	179459084	63740289	99	41508											
TTN	7273	broad.mit.edu	37	chr2	179585471	179585471	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaatctagaaccttgaagaGtgactggtgtgatcatatga	10	5	2	6			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179585471	C	C	179585471	1	2	25	0	1	0	0	0	0	0	0	0	16861	1044	36	4		4	TTN	2	179585471	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	126387	179585471	63613902	100	41509											
TTN	7273	broad.mit.edu	37	chr2	179586544	179586544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaaatatggtaaggaaCaaatattgtcaaaagtcatg	8	4	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179586544	A	A	179586544	1	1	25	0	1	0	0	0	0	0	0	0	16861	493	17	3		3	TTN	2	179586544	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1073	179586544	63612829	101	41510											
ITGA4	3676	broad.mit.edu	37	chr2	182359483	182359483	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagatcagcaaatcgttaaGtatgtttggacagtctatat	8	6	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182359483	C	C	182359483	3	2	25	1	0	0	0	0	1	0	0	0	7948	1029	36	4	1329	4	ITGA4	2	182359483	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2772939	182359483	60839890	102	41511											
PDE1A	5136	broad.mit.edu	37	chr2	183051238	183051238	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcggcttttgaggcttcctCtataagaggaataacaattt	8	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183051238	A	A	183051238	4	1	25	1	0	0	0	0	0	1	0	0	11727	922	32	3	364	3	PDE1A	2	183051238	Nonsense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	691755	183051238	60148135	103	41512											
COL3A1	1281	broad.mit.edu	37	chr2	189868184	189868184	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaacgtggcagtcctggTggacctgtaagtattgatcc	14	8	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189868184	C	C	189868184	2	2	25	1	0	0	0	0	0	0	0	1	3720	1683	59	5		5	COL3A1	2	189868184	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	6816946	189868184	53331189	104	41513											
MOBKL3	25843	broad.mit.edu	37	chr2	198400420	198400420	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttcatattaatgataatTatgaattgtaaaatttacta	4	3	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198400420	C	C	198400420	1	2	25	0	1	0	0	0	0	0	0	0	9781	1769	61	5		5	MOBKL3	2	198400420	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	8532236	198400420	44798953	105	41514											
PLCL1	5334	broad.mit.edu	37	chr2	198966095	198966095	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaagcaggtaattgtttTtaatttttttttctgttttt	6	3	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198966095	C	C	198966095	1	2	25	0	1	0	0	0	0	0	0	0	12134	1856	64	5		5	PLCL1	2	198966095	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	565675	198966095	44233278	106	41515											
INO80D	54891	broad.mit.edu	37	chr2	206869874	206869874	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcactctggctgatcagagTggcagaagtaaggccaacgt	13	9	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206869874	A	A	206869874	3	1	25	1	0	0	0	0	1	0	0	0	7819	1696	59	5	785	5	INO80D	2	206869874	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	7903779	206869874	36329499	107	41516											
MDH1B	130752	broad.mit.edu	37	chr2	207610311	207610311	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttaatactcttttaatAgcagtccaataaaacatcac	2	8	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207610311	C	C	207610311	1	2	25	0	1	0	0	0	0	0	0	0	9502	435	15	5		5	MDH1B	2	207610311	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	740437	207610311	35589062	108	41517											
MYL1	4632	broad.mit.edu	37	chr2	211158990	211158990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtggctagaacatggcGgagttcagcacccatgactg	14	10	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211158990	T	T	211158990	3	4	25	1	0	0	0	0	1	0	0	0	10137	1116	39	1	139	1	MYL1	2	211158990	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3548679	211158990	32040383	109	41518											
VWC2L	402117	broad.mit.edu	37	chr2	215279062	215279062	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctgatctttgatgactatCgagggaaagggtgtgtcgat	13	5	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215279062	A	A	215279062	2	1	25	1	0	0	0	0	0	0	0	1	17371	876	31	3		3	VWC2L	2	215279062	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	4120072	215279062	27920311	110	41519											
CYP27A1	1593	broad.mit.edu	37	chr2	219674425	219674425	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagggcaagtacccagtacgGaacgacatggagctatggaa	14	8	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219674425	T	T	219674425	2	4	25	1	0	0	0	0	0	0	0	1	4191	1161	41	3		3	CYP27A1	2	219674425	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	4395363	219674425	23524948	111	41520											
SLC4A3	6508	broad.mit.edu	37	chr2	220495100	220495100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaccttgtggcagccccCatggtccactgcgacggact	12	14	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220495100	A	A	220495100	1	1	25	0	1	0	0	0	0	0	0	0	14769	609	21	2		2	SLC4A3	2	220495100	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	820675	220495100	22704273	112	41521											
CHRNG	1146	broad.mit.edu	37	chr2	233404770	233404770	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactacgaccccaacctgCggcccgcggaacgagactcg	10	16	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233404770	A	A	233404770	2	1	25	1	0	0	0	0	0	0	0	1	3427	759	27	3		3	CHRNG	2	233404770	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	12909670	233404770	9794603	113	41522											
DNAJB3	414061	broad.mit.edu	37	chr2	234652413	234652413	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaacacctcgtaggcctcGgccacctgcttgaatctcct	8	16	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234652413	A	A	234652413	2	1	25	1	0	0	0	0	0	0	0	1	4661	1103	39	4		4	DNAJB3	2	234652413	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1247643	234652413	8546960	114	41523											
ESPNL	339768	broad.mit.edu	37	chr2	239025474	239025474	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggggcaggggagcggcccGcacagggccagtcccatggg	19	12	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	239025474	C	C	239025474	1	2	25	0	1	0	0	0	0	0	0	0	5297	1102	38	4		4	ESPNL	2	239025474	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	4373061	239025474	4173899	115	41524											
OTOS	150677	broad.mit.edu	37	chr2	241078631	241078631	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcccagcgtgctccccaGggggaagtgggcaaagaagg	17	10	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241078631	A	A	241078631	2	1	25	1	0	0	0	0	0	0	0	1	11403	991	35	4		4	OTOS	2	241078631	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	2053157	241078631	2120742	116	41525											
NEU4	129807	broad.mit.edu	37	chr2	242757727	242757727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagcgcgtggcttccctgCccgagactgcctggggctgc	15	15	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242757727	A	A	242757727	3	1	25	1	0	0	0	0	1	0	0	0	10439	739	26	3	861	3	NEU4	2	242757727	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1679096	242757727	441646	117	41526											
C2orf85	285093	broad.mit.edu	37	chr2	242814448	242814448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcggccagggctccatcttCctgtctggggattcagtggc	13	12	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242814448	A	A	242814448	3	1	25	1	0	0	0	0	1	0	0	0	2222	854	30	3	747	3	C2orf85	2	242814448	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	56721	242814448	384925	118	41527											
IL5RA	3568	broad.mit.edu	37	chr3	3136995	3136995	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaattacctgcaaatatccAttccttgtattgtgtatttt	5	7	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3136995	G	G	3136995	2	3	25	1	0	0	0	0	0	0	0	1	7770	214	8	5		5	IL5RA	3	3136995	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08		3136995	194885435	119	41528											
CRBN	51185	broad.mit.edu	37	chr3	3215645	3215645	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattcttacccaacctctccTgtacatgcgaaataacagcc	4	15	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3215645	A	A	3215645	1	1	25	0	1	0	0	0	0	0	0	0	3883	1595	55	5		5	CRBN	3	3215645	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	78650	3215645	194806785	120	41529											
LMCD1	29995	broad.mit.edu	37	chr3	8590464	8590464	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcggcgtgggagaagtgGccctcccggggcagggtggc	19	13	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8590464	A	A	8590464	3	1	25	1	0	0	0	0	1	0	0	0	8918	1203	42	4	612	4	LMCD1	3	8590464	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	5374819	8590464	189431966	121	41530											
OGG1	4968	broad.mit.edu	37	chr3	9792684	9792684	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactagcggatcaagtatggAcactgactcagactgaggag	12	8	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9792684	G	G	9792684	3	3	25	1	0	0	0	0	1	0	0	0	10940	275	10	5	199	5	OGG1	3	9792684	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	1202220	9792684	188229746	122	41531											
ATP2B2	491	broad.mit.edu	37	chr3	10381973	10381973	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgaatatgcaccacatccActggtccagctgcagtggag	10	11	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10381973	T	T	10381973	3	4	25	1	0	0	0	0	1	0	0	0	1144	159	6	5	553	5	ATP2B2	3	10381973	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	589289	10381973	187640457	123	41532											
GALNTL2	117248	broad.mit.edu	37	chr3	16254176	16254176	+	Frame_Shift_Del	DEL	C	-	-													ccccctcgaccaggaggccaCcctgaggaacagggttcgca							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16254176	-	-	16254176	7	5	25	1	0	1	0	1	0	0	0	0	6284	507	18	0	1320	0	GALNTL2	3	16254176	Frame_Shift_Del	DEL	C	TCGA-05-4430-01A-02D-1265-08	5872203	16254176	181768254	124	41533											
KCNH8	131096	broad.mit.edu	37	chr3	19322780	19322780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcgttcaaagatataaCagatacaaaagtgaagatta	8	6	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19322780	A	A	19322780	3	1	25	1	0	0	0	0	1	0	0	0	8108	478	17	3	411	3	KCNH8	3	19322780	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3068604	19322780	178699650	125	41534											
KCNH8	131096	broad.mit.edu	37	chr3	19492583	19492583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcatccctgctgtcttGcaaagtaaatcagttagact	8	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19492583	T	T	19492583	1	4	25	0	1	0	0	0	0	0	0	0	8108	1334	46	3		3	KCNH8	3	19492583	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	169803	19492583	178529847	126	41535											
SGOL1	151648	broad.mit.edu	37	chr3	20216127	20216127	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgttttgattttctcctgTtagcttttcttttctcttct	4	9	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20216127	C	C	20216127	3	2	25	1	0	0	0	0	1	0	0	0	14329	1725	60	5	825	5	SGOL1	3	20216127	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	723544	20216127	177806303	127	41536											
STT3B	201595	broad.mit.edu	37	chr3	31659293	31659293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaactgtctgaaatagGttgacacctataaatgaaaa	7	8	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31659293	T	T	31659293	1	4	25	0	1	0	0	0	0	0	0	0	15452	1276	44	3		3	STT3B	3	31659293	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	11443166	31659293	166363137	128	41537											
DCLK3	85443	broad.mit.edu	37	chr3	36779774	36779774	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcttttcaatctccaccCcaagatgcttctctcccctt	4	16	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36779774	T	T	36779774	3	4	25	1	0	0	0	0	1	0	0	0	4326	623	22	4	1585	4	DCLK3	3	36779774	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	5120481	36779774	161242656	129	41538											
DLEC1	9940	broad.mit.edu	37	chr3	38127665	38127665	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgtacctcaggagaaGcatgacagtagggcctatta	12	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38127665	C	C	38127665	1	2	25	0	1	0	0	0	0	0	0	0	4592	986	34	4		4	DLEC1	3	38127665	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1347891	38127665	159894765	130	41539											
SCN10A	6336	broad.mit.edu	37	chr3	38791551	38791551	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtggatgaacaatgcagtGagcagcacttaccctcaagg	11	10	1	2	rs138063699	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38791551	T	T	38791551	1	4	25	0	1	0	0	0	0	0	0	0	14025	1305	45	3		3	SCN10A	3	38791551	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	663886	38791551	159230879	131	41540											
CTNNB1	1499	broad.mit.edu	37	chr3	41265541	41265541	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtataccatacaactgtttTgaaaatccagcgtggacaat	7	8	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41265541	G	G	41265541	1	3	25	0	1	0	0	0	0	0	0	0	4050	1827	63	5		5	CTNNB1	3	41265541	5'UTR	SNP	T	TCGA-05-4430-01A-02D-1265-08	2473990	41265541	156756889	132	41541											
TDGF1	6997	broad.mit.edu	37	chr3	46621261	46621261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaacctgctgcctgaatGggggaacctgcatgctgggg	15	10	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46621261	T	T	46621261	3	4	25	1	0	0	0	0	1	0	0	0	15848	1348	47	2	270	2	TDGF1	3	46621261	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	5355720	46621261	151401169	133	41542											
WDR6	11180	broad.mit.edu	37	chr3	49052329	49052329	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcacaccttgcccaccCgtgagggccaccatctcgtg	10	18	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49052329	T	T	49052329	3	4	25	1	0	0	0	0	1	0	0	0	17437	652	23	4	3086	4	WDR6	3	49052329	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2431068	49052329	148970101	134	41543											
UBA7	7318	broad.mit.edu	37	chr3	49850834	49850834	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactagggagagagccagtGcagcctgagcaaagacactc	12	10	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49850834	A	A	49850834	1	1	25	0	1	0	0	0	0	0	0	0	16959	1334	46	4		4	UBA7	3	49850834	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	798505	49850834	148171596	135	41544											
STAB1	23166	broad.mit.edu	37	chr3	52555544	52555545	+	Intron	INS	-	C	C													aggtgggccatccctgcctgINSccccacggcccgattccttt					rs72947535	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52555545	C	C	52555544	6	5	25	0	1	1	1	0	0	0	0	0	15355	1334	46	0		0	STAB1	3	52555544	Intron	INS	-	TCGA-05-4430-01A-02D-1265-08	2704710	52555544	145466886	136	41545											
STAB1	23166	broad.mit.edu	37	chr3	52555556	52555556	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctgcctgccccacggcccGattcctttggcccttgtggg	11	18	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52555556	A	A	52555556	1	1	25	0	1	0	0	0	0	0	0	0	15355	1073	37	4		4	STAB1	3	52555556	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	12	52555556	145466874	137	41546											
LRTM1	57408	broad.mit.edu	37	chr3	54961995	54961995	+	Translation_Start_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaccctttaattaatgtgcaGagcaacacacgaagggcatg	10	9	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54961995	T	T	54961995	1	4	25	1	0	0	0	0	0	0	0	0	9131	957	33	3		3	LRTM1	3	54961995	Translation_Start_Site	SNP	G	TCGA-05-4430-01A-02D-1265-08	2406439	54961995	143060435	138	41547											
CADPS	8618	broad.mit.edu	37	chr3	62478119	62478119	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatctgaccaccacgcaaaGgcctttaaaatttggcagaa	7	10	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62478119	T	T	62478119	2	4	25	1	0	0	0	0	0	0	0	1	2596	987	35	2		2	CADPS	3	62478119	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	7516124	62478119	135544311	139	41548											
SLC25A26	115286	broad.mit.edu	37	chr3	66413339	66413339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggcagtcagcagtctGtggagcttttgcaggtgcaa	13	8	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66413339	A	A	66413339	3	1	25	1	0	0	0	0	1	0	0	0	14603	1377	48	4	382	4	SLC25A26	3	66413339	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3935220	66413339	131609091	140	41549											
CNTN3	5067	broad.mit.edu	37	chr3	74315728	74315728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtcctctttaatgggcaGcacaagttcagctgaagttt	10	8	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74315728	T	T	74315728	3	4	25	1	0	0	0	0	1	0	0	0	3674	962	34	3	204	3	CNTN3	3	74315728	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	7902389	74315728	123706702	141	41550											
PROS1	5627	broad.mit.edu	37	chr3	93605343	93605343	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatgttctaattcttccacaGacacctacaattaaaaagaa	3	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93605343	A	A	93605343	3	1	25	1	0	0	0	0	1	0	0	0	12664	942	33	4	890	4	PROS1	3	93605343	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	19289615	93605343	104417087	142	41551											
MORC1	27136	broad.mit.edu	37	chr3	108746749	108746749	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgacaacttcagaatcaaCaagtacaagattaacatcag	6	8	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108746749	T	T	108746749	1	4	25	0	1	0	0	0	0	0	0	0	9795	493	17	4		4	MORC1	3	108746749	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	15141406	108746749	89275681	143	41552											
CCDC80	151887	broad.mit.edu	37	chr3	112357838	112357838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcttctcgctgcccagGcttggccttcctgctccccc	7	19	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112357838	T	T	112357838	3	4	25	1	0	0	0	0	1	0	0	0	2882	1194	42	3	1965	3	CCDC80	3	112357838	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3611089	112357838	85664592	144	41553											
DRD3	1814	broad.mit.edu	37	chr3	113890615	113890615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaaggtggccaccagcaaGtctgccacagccaggctcac	10	16	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113890615	T	T	113890615	3	4	25	1	0	0	0	0	1	0	0	0	4798	1020	36	3	1001	3	DRD3	3	113890615	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1532777	113890615	84131815	145	41554											
ZNF80	7634	broad.mit.edu	37	chr3	113955452	113955452	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcacccaaagagtttttctCcagtgtgggtcacacgatgc	10	11	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113955452	T	T	113955452	3	4	25	1	0	0	0	0	1	0	0	0	18297	855	30	4	355	4	ZNF80	3	113955452	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	64837	113955452	84066978	146	41555											
ARHGAP31	57514	broad.mit.edu	37	chr3	119133448	119133448	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccttcagactgtgacgaagAtgacactgtgacagacattg	11	9	1	6			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119133448	T	T	119133448	3	4	25	1	0	0	0	0	1	0	0	0	882	333	12	5	2718	5	ARHGAP31	3	119133448	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	5177996	119133448	78888982	147	41556											
UROC1	131669	broad.mit.edu	37	chr3	126236333	126236333	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggagtccagggtgggcggCtgagcagctcccactaagag	16	11	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126236333	G	G	126236333	1	3	25	0	1	0	0	0	0	0	0	0	17154	812	28	4		4	UROC1	3	126236333	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	7102885	126236333	71786097	148	41557											
ACAD11	84129	broad.mit.edu	37	chr3	132378624	132378624	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaggccacagcaacgcgGcatccacaggtctcgagtgc	12	16	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132378624	A	A	132378624	1	1	25	0	1	0	0	0	0	0	0	0	109	1218	42	4		4	ACAD11	3	132378624	5'UTR	SNP	G	TCGA-05-4430-01A-02D-1265-08	6142291	132378624	65643806	149	41558											
COPB2	9276	broad.mit.edu	37	chr3	139076975	139076975	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaccacagaggcctacgTatcctccagatattgatggg	9	10	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139076975	C	C	139076975	1	2	25	0	1	0	0	0	0	0	0	0	3761	1653	57	5		5	COPB2	3	139076975	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	6698351	139076975	58945455	150	41559											
ZIC4	84107	broad.mit.edu	37	chr3	147120393	147120393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgaactcaagaaactccCcccaaactctcaacccaaca	2	16	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147120393	A	A	147120393	1	1	25	0	1	0	0	0	0	0	0	0	17807	638	22	2		2	ZIC4	3	147120393	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	8043418	147120393	50902037	151	41560											
MED12L	116931	broad.mit.edu	37	chr3	150881712	150881712	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcccaagtgccttggtGtggaattattccacaaatga	10	8	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150881712	T	T	150881712	2	4	25	1	0	0	0	0	0	0	0	1	9522	1364	48	3		3	MED12L	3	150881712	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	3761319	150881712	47140718	152	41561											
PLCH1	23007	broad.mit.edu	37	chr3	155200774	155200774	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaggatgataactttttgTtgaaatttagaaaatgtgga	11	1	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155200774	A	A	155200774	3	1	25	1	0	0	0	0	1	0	0	0	12132	1725	60	5	2020	5	PLCH1	3	155200774	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	4319062	155200774	42821656	153	41562											
ALG3	10195	broad.mit.edu	37	chr3	183961588	183961588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttctcacctgtgccacCtgcagagggcaaacagcagg	10	14	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183961588	A	A	183961588	3	1	25	1	0	0	0	0	1	0	0	0	520	681	24	2	409	2	ALG3	3	183961588	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	28760814	183961588	14060842	154	41563											
ATP13A4	84239	broad.mit.edu	37	chr3	193132540	193132540	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggcaccattcagattcaCtataaaataaattcgaattt	5	7	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193132540	A	A	193132540	5	1	25	1	0	0	0	0	0	0	1	0	1130	579	20	3	768	3	ATP13A4	3	193132540	Splice_Site	SNP	C	TCGA-05-4430-01A-02D-1265-08	9170952	193132540	4889890	155	41564											
CPN2	1370	broad.mit.edu	37	chr3	194062704	194062704	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgcagccacagcctctctAggcagaagagctgggagaac	13	11	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194062704	T	T	194062704	3	4	25	1	0	0	0	0	1	0	0	0	3842	420	15	5	913	5	CPN2	3	194062704	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	930164	194062704	3959726	156	41565											
ZNF595	152687	broad.mit.edu	37	chr4	60022	60022	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccctgcaatttgaagataCatgagacagcagccaaaccc	8	12	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60022	G	G	60022	3	3	25	1	0	0	0	0	1	0	0	0	18152	478	17	4	212	4	ZNF595	4	60022	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08		60022	191094254	157	41566											
ADD1	118	broad.mit.edu	37	chr4	2930188	2930190	+	In_Frame_Del	DEL	AAG	-	-													caggcaagtccccgtccaaaAagaagaagaagttccgtacc							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2930190	-	-	2930188	7	5	25	1	0	1	0	1	0	0	0	0	304	15	1	0	2337	0	ADD1	4	2930188	In_Frame_Del	DEL	AAG	TCGA-05-4430-01A-02D-1265-08	2870166	2930188	188224088	158	41567											
PPP2R2C	5522	broad.mit.edu	37	chr4	6383623	6383623	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaggggaacaccccttccaTcaccaacattctcaggttct	6	15	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6383623	A	A	6383623	1	1	25	0	1	0	0	0	0	0	0	0	12487	1450	50	5		5	PPP2R2C	4	6383623	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	3453435	6383623	184770653	159	41568											
USP46	64854	broad.mit.edu	37	chr4	53468216	53468216	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgggcagcttttttacccTcatcctaagaaaccaagaaa	6	11	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53468216	A	A	53468216	3	1	25	1	0	0	0	0	1	0	0	0	17204	1550	54	5	385	5	USP46	4	53468216	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	47084593	53468216	137686060	160	41569											
KDR	3791	broad.mit.edu	37	chr4	55968660	55968660	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccaggtttcctgtgatcGtgggtgccacacgctctaga	11	12	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55968660	A	A	55968660	3	1	25	1	0	0	0	0	1	0	0	0	8209	1145	40	4	2135	4	KDR	4	55968660	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2500444	55968660	135185616	161	41570											
UGT2B4	7363	broad.mit.edu	37	chr4	70361472	70361472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggattgtctttatattcatCcagtggctgaattctgtggg	11	6	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70361472	A	A	70361472	3	1	25	1	0	0	0	0	1	0	0	0	17087	856	30	3	1502	3	UGT2B4	4	70361472	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	14392812	70361472	120792804	162	41571											
AFM	173	broad.mit.edu	37	chr4	74363524	74363524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaattgaatacataatcccTcgaagcgtaaaaaagttagc	7	7	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74363524	A	A	74363524	1	1	25	0	1	0	0	0	0	0	0	0	361	1566	54	5		5	AFM	4	74363524	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	4002052	74363524	116790752	163	41572											
LIN54	132660	broad.mit.edu	37	chr4	83905676	83905676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgattggctgatatagtcaCaggagtctgagcaccaagtt	11	8	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83905676	A	A	83905676	3	1	25	1	0	0	0	0	1	0	0	0	8882	478	17	3	1975	3	LIN54	4	83905676	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	9542152	83905676	107248600	164	41573											
DSPP	1834	broad.mit.edu	37	chr4	88535090	88535090	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgtcaacatagaaggaCctggccaaaaatcagaacca	9	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88535090	A	A	88535090	3	1	25	1	0	0	0	0	1	0	0	0	4822	507	18	3	1290	3	DSPP	4	88535090	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4629414	88535090	102619186	165	41574											
HERC6	55008	broad.mit.edu	37	chr4	89363544	89363544	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attctacaatggaaagaatgGaggaagcacttcaagtagcc	10	7	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89363544	A	A	89363544	3	1	25	1	0	0	0	0	1	0	0	0	7129	1175	41	4	2888	4	HERC6	4	89363544	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	828454	89363544	101790732	166	41575											
C4orf37	285555	broad.mit.edu	37	chr4	98893504	98893504	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtccgaggaacagaagaaCcaaatgcacttttcttctgt	8	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98893504	G	G	98893504	3	3	25	1	0	0	0	0	1	0	0	0	2290	507	18	4	539	4	C4orf37	4	98893504	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	9529960	98893504	92260772	167	41576											
AIMP1	9255	broad.mit.edu	37	chr4	107249400	107249400	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagaaaattgaaaagaaaGgtatttttgacctttaagca	8	3	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107249400	C	C	107249400	3	2	25	1	0	0	0	0	1	0	0	0	433	1014	35	4	477	4	AIMP1	4	107249400	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	8355896	107249400	83904876	168	41577											
RRH	10692	broad.mit.edu	37	chr4	110763780	110763780	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacattctataacccctgCatttatgtggttgctaataa	5	9	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763780	A	A	110763780	4	1	25	1	0	0	0	0	0	1	0	0	13791	718	25	3	898	3	RRH	4	110763780	Nonsense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3514380	110763780	80390496	169	41578											
C4orf21	55345	broad.mit.edu	37	chr4	113540185	113540185	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctacagtagaagaatgtAtaggtgaactctgtgaggat	11	5	2	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113540185	T	T	113540185	3	4	25	1	0	0	0	0	1	0	0	0	2277	449	16	5	5393	5	C4orf21	4	113540185	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	2776405	113540185	77614091	170	41579											
ANK2	287	broad.mit.edu	37	chr4	114278877	114278877	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaataagcaaagtcatcAtcacaaaaactgatgtggat	6	7	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114278877	G	G	114278877	3	3	25	1	0	0	0	0	1	0	0	0	621	217	8	5	9318	5	ANK2	4	114278877	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	738692	114278877	76875399	171	41580											
ANK2	287	broad.mit.edu	37	chr4	114279344	114279344	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgacgtgagtgaggaagtAgaggaaatacctgcttcgga	15	5	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114279344	T	T	114279344	2	4	25	1	0	0	0	0	0	0	0	1	621	407	15	5		5	ANK2	4	114279344	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	467	114279344	76874932	172	41581											
PDE5A	8654	broad.mit.edu	37	chr4	120432185	120432185	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttaaaattccacaacaAtaaattaggtacttactgga	4	7	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120432185	G	G	120432185	1	3	25	0	1	0	0	0	0	0	0	0	11738	116	4	5		5	PDE5A	4	120432185	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	6152841	120432185	70722091	173	41582											
FAT4	79633	broad.mit.edu	37	chr4	126411519	126411519	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtgggcagctgcgcaacCgtcttggccctcctggtcct	12	15	1	0	rs138057366	byFrequency	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126411519	A	A	126411519	2	1	25	1	0	0	0	0	0	0	0	1	5749	639	23	1		1	FAT4	4	126411519	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	5979334	126411519	64742757	174	41583											
PCDH10	57575	broad.mit.edu	37	chr4	134075550	134075550	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttttttccctagcagtaaTggacaatttacaacctagta	5	9	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134075550	G	G	134075550	1	3	25	0	1	0	0	0	0	0	0	0	11601	1479	51	5		5	PCDH10	4	134075550	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	7664031	134075550	57078726	175	41584											
CLGN	1047	broad.mit.edu	37	chr4	141331707	141331707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttgaatgaatactcacCcagccaaccttccactatca	3	15	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141331707	A	A	141331707	3	1	25	1	0	0	0	0	1	0	0	0	3556	637	22	2	1666	2	CLGN	4	141331707	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	7256157	141331707	49822569	176	41585											
MARCH1	55016	broad.mit.edu	37	chr4	165111035	165111035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtcacctttgagatagAtgtgaatggtattcttcgag	11	5	2	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165111035	G	G	165111035	1	3	25	0	1	0	0	0	0	0	0	0	9390	348	12	5		5	MARCH1	4	165111035	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	23779328	165111035	26043241	177	41586											
ANXA10	11199	broad.mit.edu	37	chr4	169105948	169105948	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagttaactattcagacAgggataacctagtttttttc	6	6	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169105948	T	T	169105948	1	4	25	0	1	0	0	0	0	0	0	0	715	203	7	5		5	ANXA10	4	169105948	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	3994913	169105948	22048328	178	41587											
GALNTL6	442117	broad.mit.edu	37	chr4	173269702	173269702	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataagatgtatctggaaaggCtgccaaacaccagcatcatt	8	9	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173269702	T	T	173269702	2	4	25	1	0	0	0	0	0	0	0	1	6287	796	28	4		4	GALNTL6	4	173269702	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	4163754	173269702	17884574	179	41588											
FASTKD3	79072	broad.mit.edu	37	chr5	7866922	7866922	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttctaaataaagcagaGgcatttggtggcaaataatt	9	5	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7866922	T	T	7866922	2	4	25	1	0	0	0	0	0	0	0	1	5744	987	35	2		2	FASTKD3	5	7866922	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08		7866922	173048338	180	41589											
MARCH6	10299	broad.mit.edu	37	chr5	10407054	10407054	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttaggaaaacatttttatAcaaaatgactcaaagataat	4	5	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10407054	G	G	10407054	1	3	25	0	1	0	0	0	0	0	0	0	9397	406	14	5		5	MARCH6	5	10407054	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2540132	10407054	170508206	181	41590											
MYO10	4651	broad.mit.edu	37	chr5	16682156	16682157	+	Intron	DEL	TT	-	-													tgagaaggaaacaaagccccTtagccctaccgtcagcatca							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16682157	-	-	16682156	6	5	25	0	1	1	0	1	0	0	0	0	10156	1624	56	0		0	MYO10	5	16682156	Intron	DEL	TT	TCGA-05-4430-01A-02D-1265-08	6275102	16682156	164233104	182	41591											
PRDM9	56979	broad.mit.edu	37	chr5	23527621	23527621	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccctatgtctgcagggaGtgtgggcggggctttagcaa	16	8	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23527621	T	T	23527621	3	4	25	1	0	0	0	0	1	0	0	0	12569	1020	36	3	2462	3	PRDM9	5	23527621	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	6845465	23527621	157387639	183	41592											
ADAMTS12	81792	broad.mit.edu	37	chr5	33662100	33662100	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcttctgccacttgcagaAgctagacagtgtcttttctg	8	11	4	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33662100	T	T	33662100	3	4	25	1	0	0	0	0	1	0	0	0	257	72	3	5	3899	5	ADAMTS12	5	33662100	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	10134479	33662100	147253160	184	41593											
HEATR7B2	133558	broad.mit.edu	37	chr5	41065626	41065626	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaataacaataacaactAgaaaaggggcagagtgagtc	10	5	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41065626	G	G	41065626	1	3	25	0	1	0	0	0	0	0	0	0	7102	435	15	5		5	HEATR7B2	5	41065626	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	7403526	41065626	139849634	185	41594											
UTP15	84135	broad.mit.edu	37	chr5	72863231	72863231	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttggtgaaaaaatcacccAagatacactgtactggaaca	7	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72863231	T	T	72863231	3	4	25	1	0	0	0	0	1	0	0	0	17224	130	5	5	64	5	UTP15	5	72863231	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	31797605	72863231	108052029	186	41595											
CRHBP	1393	broad.mit.edu	37	chr5	76249973	76249973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattaccatccactacgacCaggtctccatcgactgtcag	6	15	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76249973	A	A	76249973	3	1	25	1	0	0	0	0	1	0	0	0	3902	595	21	2	305	2	CRHBP	5	76249973	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3386742	76249973	104665287	187	41596											
CMYA5	202333	broad.mit.edu	37	chr5	79026350	79026350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagaggaaattgcatctGtttctactggttctgctttt	9	6	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79026350	T	T	79026350	3	4	25	1	0	0	0	0	1	0	0	0	3622	1377	48	3	1768	3	CMYA5	5	79026350	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2776377	79026350	101888910	188	41597											
RASGRF2	5924	broad.mit.edu	37	chr5	80364046	80364046	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattgtttcacgtttaccgtCatttcctcatgattacttaa	4	10	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80364046	T	T	80364046	1	4	25	0	1	0	0	0	0	0	0	0	13181	841	29	4		4	RASGRF2	5	80364046	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1337696	80364046	100551214	189	41598											
RASGRF2	5924	broad.mit.edu	37	chr5	80381539	80381539	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagagtagagacaagcttctCgaagcaatgatggccctgcg	13	9	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80381539	T	T	80381539	1	4	25	0	1	0	0	0	0	0	0	0	13181	899	31	4		4	RASGRF2	5	80381539	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	17493	80381539	100533721	190	41599											
PCSK1	5122	broad.mit.edu	37	chr5	95761538	95761538	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttaccaagtaccattgctGattccacatgggatcattga	7	10	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95761538	A	A	95761538	4	1	25	1	0	0	0	0	0	1	0	0	11694	1299	45	4	1927	4	PCSK1	5	95761538	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	15379999	95761538	85153722	191	41600											
TSLP	85480	broad.mit.edu	37	chr5	110407675	110407675	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggctggtgttaacttaCgacttcactaactgtgactt	10	8	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110407675	A	A	110407675	4	1	25	1	0	0	0	0	0	1	0	0	16753	547	19	3	89	3	TSLP	5	110407675	Nonsense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	14646137	110407675	70507585	192	41601											
WDR36	134430	broad.mit.edu	37	chr5	110456857	110456857	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaataattaacattctTtatagaccctaagcatgcat	5	7	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110456857	G	G	110456857	1	3	25	0	1	0	0	0	0	0	0	0	17417	1856	64	5		5	WDR36	5	110456857	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	49182	110456857	70458403	193	41602											
STARD4	134429	broad.mit.edu	37	chr5	110835458	110835458	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaccaaacattgtacTagtgaaccaaaaacatttca	3	8	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110835458	A	A	110835458	1	1	25	0	1	0	0	0	0	0	0	0	15377	1537	53	5		5	STARD4	5	110835458	3'UTR	SNP	T	TCGA-05-4430-01A-02D-1265-08	378601	110835458	70079802	194	41603											
AFF4	27125	broad.mit.edu	37	chr5	132232314	132232314	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacaggagtcctattgctctCggggtacttaggagtttgtg	13	7	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132232314	T	T	132232314	3	4	25	1	0	0	0	0	1	0	0	0	359	893	31	4	1527	4	AFF4	5	132232314	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	21396856	132232314	48682946	195	41604											
TCERG1	10915	broad.mit.edu	37	chr5	145838723	145838723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcacaagctcaggcccagGcccaggctcaggtccaggcc	13	16	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145838723	T	T	145838723	3	4	25	1	0	0	0	0	1	0	0	0	15807	1203	42	3	729	3	TCERG1	5	145838723	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	13606409	145838723	35076537	196	41605											
EBF1	1879	broad.mit.edu	37	chr5	158139391	158139391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggcattcagatggtggCaatcctggaagactcgggga	17	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158139391	A	A	158139391	1	1	25	0	1	0	0	0	0	0	0	0	4920	725	25	3		3	EBF1	5	158139391	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	12300668	158139391	22775869	197	41606											
GABRG2	2566	broad.mit.edu	37	chr5	161580458	161580458	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtccacttaaataatcctCtatgtggttgataatgatct	6	7	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161580458	G	G	161580458	1	3	25	0	1	0	0	0	0	0	0	0	6232	928	32	4		4	GABRG2	5	161580458	3'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	3441067	161580458	19334802	198	41607											
SLIT3	6586	broad.mit.edu	37	chr5	168180932	168180932	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtctccagctggttccctGtcagcatcagctcctgcacg	10	16	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168180932	A	A	168180932	3	1	25	1	0	0	0	0	1	0	0	0	14855	1377	48	4	2885	4	SLIT3	5	168180932	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	6600474	168180932	12734328	199	41608											
FOXI1	2299	broad.mit.edu	37	chr5	169533452	169533452	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccttctacaacaagagcaAggccggctggcagaactcca	9	15	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169533452	T	T	169533452	3	4	25	1	0	0	0	0	1	0	0	0	6069	72	3	5	493	5	FOXI1	5	169533452	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	1352520	169533452	11381808	200	41609											
NSD1	64324	broad.mit.edu	37	chr5	176721186	176721186	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagctctggcagggactTgtcagaggccattgctacct	11	10	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176721186	G	G	176721186	3	3	25	1	0	0	0	0	1	0	0	0	10764	1812	63	5	6903	5	NSD1	5	176721186	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	7187734	176721186	4194074	201	41610											
ADAMTS2	9509	broad.mit.edu	37	chr5	178548631	178548631	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagggcatgcactggaggGcagaggcagagttataaacg	16	8	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178548631	A	A	178548631	1	1	25	0	1	0	0	0	0	0	0	0	265	1218	42	4		4	ADAMTS2	5	178548631	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1827445	178548631	2366629	202	41611											
SCGB3A1	92304	broad.mit.edu	37	chr5	180017711	180017711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgcccaggctgctcagCaggagcttcagcgggttgag	17	10	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180017711	A	A	180017711	2	1	25	1	0	0	0	0	0	0	0	1	14013	697	25	3		3	SCGB3A1	5	180017711	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	1469080	180017711	897549	203	41612											
FLT4	2324	broad.mit.edu	37	chr5	180057362	180057362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagggagcaagctgttgGggaagggacgtggcggccag	22	6	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180057362	T	T	180057362	1	4	25	0	1	0	0	0	0	0	0	0	6002	1247	43	2		2	FLT4	5	180057362	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	39651	180057362	857898	204	41613											
TFAP2A	7020	broad.mit.edu	37	chr6	10400611	10400611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagggagaaggaagagCaaaaacgatttttgtttctc	10	5	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10400611	A	A	10400611	1	1	25	0	1	0	0	0	0	0	0	0	15910	725	25	3		3	TFAP2A	6	10400611	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08		10400611	160714456	205	41614											
TFAP2A	7020	broad.mit.edu	37	chr6	10407101	10407101	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaaaaggatacacatggAtgtaagtgtatcatcaaaac	7	7	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10407101	G	G	10407101	1	3	25	0	1	0	0	0	0	0	0	0	15910	348	12	5		5	TFAP2A	6	10407101	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	6490	10407101	160707966	206	41615											
SYCP2L	221711	broad.mit.edu	37	chr6	10964126	10964126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgaatcggggtcagggCagggagcaagctctaaaaga	16	6	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10964126	A	A	10964126	1	1	25	0	1	0	0	0	0	0	0	0	15552	725	25	3		3	SYCP2L	6	10964126	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	557025	10964126	160150941	207	41616											
RNF144B	255488	broad.mit.edu	37	chr6	18399839	18399839	+	Frame_Shift_Del	DEL	C	-	-													tcctggagacctggctccggCccccctcatcacttgcaaac							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18399839	-	-	18399839	7	5	25	1	0	1	0	1	0	0	0	0	13557	739	26	0	76	0	RNF144B	6	18399839	Frame_Shift_Del	DEL	C	TCGA-05-4430-01A-02D-1265-08	7435713	18399839	152715228	208	41617											
HDGFL1	154150	broad.mit.edu	37	chr6	22569972	22569972	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgagtcccaaacgcctGttcccgtacaaggagtgcaa	9	13	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22569972	C	C	22569972	2	2	25	1	0	0	0	0	0	0	0	1	7086	1364	48	4		4	HDGFL1	6	22569972	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	4170133	22569972	148545095	209	41618											
SCGN	10590	broad.mit.edu	37	chr6	25669683	25669683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaactgtagtagataccacAtaattattccaagttatctg	6	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25669683	G	G	25669683	1	3	25	0	1	0	0	0	0	0	0	0	14016	232	8	5		5	SCGN	6	25669683	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	3099711	25669683	145445384	210	41619											
SLC17A1	6568	broad.mit.edu	37	chr6	25799037	25799037	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacgtgtgtgttgtttttcTttagcccagtcctgaatttc	9	8	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25799037	C	C	25799037	2	2	25	1	0	0	0	0	0	0	0	1	14529	1606	56	5		5	SLC17A1	6	25799037	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	129354	25799037	145316030	211	41620											
NKAPL	222698	broad.mit.edu	37	chr6	28227314	28227314	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagggcctcaggcctccttgGagtgagttggacgtgggcgc	18	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28227314	T	T	28227314	3	4	25	1	0	0	0	0	1	0	0	0	10535	1183	41	3	167	3	NKAPL	6	28227314	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2428277	28227314	142887753	212	41621											
ZNF323	64288	broad.mit.edu	37	chr6	28294239	28294239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgtgtcgagtgaggcCattgctggcactgaaggctt	13	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28294239	A	A	28294239	3	1	25	1	0	0	0	0	1	0	0	0	17969	594	21	2	299	2	ZNF323	6	28294239	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	66925	28294239	142820828	213	41622											
OR2J3	442186	broad.mit.edu	37	chr6	29079836	29079836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtcatacctggactccCatctgcacacaccaatgtac	5	16	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29079836	A	A	29079836	3	1	25	1	0	0	0	0	1	0	0	0	11098	594	21	2	171	2	OR2J3	6	29079836	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	785597	29079836	142035231	214	41623											
ZFP57	346171	broad.mit.edu	37	chr6	29640787	29640787	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagagttggatctggcatcCtgacagagggttccagtgat	14	7	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29640787	T	T	29640787	2	4	25	1	0	0	0	0	0	0	0	1	17777	680	24	4		4	ZFP57	6	29640787	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	560951	29640787	141474280	215	41624											
HSPA1L	3305	broad.mit.edu	37	chr6	31777930	31777930	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagagttttgtgatgataGggttacacatctgctccaat	11	6	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31777930	A	A	31777930	3	1	25	1	0	0	0	0	1	0	0	0	7479	1000	35	4	109	4	HSPA1L	6	31777930	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2137143	31777930	139337137	216	41625											
ITPR3	3710	broad.mit.edu	37	chr6	33644869	33644869	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taccagatcgtcaagggcgtGagtggccaagggtcctcggg	16	10	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33644869	T	T	33644869	1	4	25	0	1	0	0	0	0	0	0	0	7992	1305	45	3		3	ITPR3	6	33644869	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1866939	33644869	137470198	217	41626											
C6orf106	64771	broad.mit.edu	37	chr6	34584923	34584923	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataacttcctgtggcccttcAaattatcttctgcattaagt	5	10	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34584923	G	G	34584923	1	3	25	0	1	0	0	0	0	0	0	0	2342	145	5	5		5	C6orf106	6	34584923	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	940054	34584923	136530144	218	41627											
MDGA1	266727	broad.mit.edu	37	chr6	37622419	37622419	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagaggctggagaagccctCaggggagatgagaggggaga	19	5	1	5			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37622419	A	A	37622419	1	1	25	0	1	0	0	0	0	0	0	0	9499	841	29	3		3	MDGA1	6	37622419	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3037496	37622419	133492648	219	41628											
TTBK1	84630	broad.mit.edu	37	chr6	43221047	43221047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaggaccatgtgtgcaGgttcattggctgtggcagga	17	6	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43221047	T	T	43221047	3	4	25	1	0	0	0	0	1	0	0	0	16802	1000	35	2	285	2	TTBK1	6	43221047	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	5598628	43221047	127894020	220	41629											
TDRD6	221400	broad.mit.edu	37	chr6	46658183	46658183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctggaagttggaagtaCagtagaagtcagagtgtctt	14	4	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46658183	T	T	46658183	3	4	25	1	0	0	0	0	1	0	0	0	15856	478	17	4	2320	4	TDRD6	6	46658183	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3437136	46658183	124456884	221	41630											
CRISP3	10321	broad.mit.edu	37	chr6	49701715	49701715	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattgactaatacataaggaGggtgcctcagatccttatca	8	8	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49701715	C	C	49701715	1	2	25	0	1	0	0	0	0	0	0	0	3913	1015	35	4		4	CRISP3	6	49701715	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3043532	49701715	121413352	222	41631											
PGK2	5232	broad.mit.edu	37	chr6	49754747	49754747	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tactgccttggctccattgtCcaggcagtacttgatgcttg	10	11	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49754747	T	T	49754747	3	4	25	1	0	0	0	0	1	0	0	0	11886	855	30	4	1103	4	PGK2	6	49754747	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	53032	49754747	121360320	223	41632											
GFRAL	389400	broad.mit.edu	37	chr6	55214930	55214930	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaatggaatctaactacAcgttcccatcatggtaatgt	6	9	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55214930	C	C	55214930	2	2	25	1	0	0	0	0	0	0	0	1	6415	146	6	5		5	GFRAL	6	55214930	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	5460183	55214930	115900137	224	41633											
DST	667	broad.mit.edu	37	chr6	56480626	56480626	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattcccatttccttatttaTaatatttgcattcacagctt	3	9	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56480626	C	C	56480626	1	2	25	0	1	0	0	0	0	0	0	0	4823	1406	49	5		5	DST	6	56480626	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	1265696	56480626	114634441	225	41634											
OOEP	441161	broad.mit.edu	37	chr6	74078997	74078997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcacccgattctgtacaCggggccgcccgaaaacggtg	11	14	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74078997	A	A	74078997	3	1	25	1	0	0	0	0	1	0	0	0	10964	536	19	3	155	3	OOEP	6	74078997	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	17598371	74078997	97036070	226	41635											
SEC63	11231	broad.mit.edu	37	chr6	108197891	108197891	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaaaaaaaaaaaaaaaAaagaagaggggtataaataa	6	1	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108197891	G	G	108197891	1	3	25	0	1	0	0	0	0	0	0	0	14118	29	1	5		5	SEC63	6	108197891	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	34118894	108197891	62917176	227	41636											
SESN1	27244	broad.mit.edu	37	chr6	109309721	109309721	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcattgctaagttacaaagTaaataagccacaataggcac	6	8	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109309721	A	A	109309721	1	1	25	0	1	0	0	0	0	0	0	0	14237	1653	57	5		5	SESN1	6	109309721	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	1111830	109309721	61805346	228	41637											
C6orf182	285753	broad.mit.edu	37	chr6	109468107	109468107	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaaacaaatgagagaaatCtggcacaccaggagctgata	10	7	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109468107	A	A	109468107	3	1	25	1	0	0	0	0	1	0	0	0	2369	912	32	3	313	3	C6orf182	6	109468107	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	158386	109468107	61646960	229	41638											
FIG4	9896	broad.mit.edu	37	chr6	110048515	110048515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttggagacaaggtcttGccctgttgcccaggctggaa	12	9	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110048515	T	T	110048515	1	4	25	0	1	0	0	0	0	0	0	0	5945	1334	46	3		3	FIG4	6	110048515	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	580408	110048515	61066552	230	41639											
FIG4	9896	broad.mit.edu	37	chr6	110048529	110048529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttgccctgttgcccagGctggaaggctggaatataat	13	9	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110048529	T	T	110048529	1	4	25	0	1	0	0	0	0	0	0	0	5945	1218	42	3		3	FIG4	6	110048529	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	14	110048529	61066538	231	41640											
TRDN	10345	broad.mit.edu	37	chr6	123892215	123892215	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctcttcagcacttttcCgggggatttgggcacagatc	11	11	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123892215	T	T	123892215	3	4	25	1	0	0	0	0	1	0	0	0	16592	661	23	4	2264	4	TRDN	6	123892215	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	13843686	123892215	47222852	232	41641											
SASH1	23328	broad.mit.edu	37	chr6	148761293	148761293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacatgtttggaagtcccGttaaactggcatctgttctg	11	8	2	1	rs149141793	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148761293	T	T	148761293	1	4	25	0	1	0	0	0	0	0	0	0	13960	1160	40	3		3	SASH1	6	148761293	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	24869078	148761293	22353774	233	41642											
THBS2	7058	broad.mit.edu	37	chr6	169626329	169626329	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgatcccccacaccgtcAccatccgtgtccctctggtc	7	19	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169626329	T	T	169626329	2	4	25	1	0	0	0	0	0	0	0	1	15977	146	6	5		5	THBS2	6	169626329	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	20865036	169626329	1488738	234	41643											
STK31	56164	broad.mit.edu	37	chr7	23823393	23823393	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttttaaataaaaatactcCtgatgaatattttatgggta	5	4	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23823393	T	T	23823393	1	4	25	0	1	0	0	0	0	0	0	0	15414	696	24	4		4	STK31	7	23823393	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08		23823393	135315270	235	41644											
CPVL	54504	broad.mit.edu	37	chr7	29160641	29160641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccaggcatcaacaggaCcagcgaaacaatcaccttcc	10	14	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29160641	A	A	29160641	3	1	25	1	0	0	0	0	1	0	0	0	3867	507	18	3	1441	3	CPVL	7	29160641	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	5337248	29160641	129978022	236	41645											
CHN2	1124	broad.mit.edu	37	chr7	29407610	29407610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcctcgggaggtcagtGctcagctatttccaatacac	9	11	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29407610	T	T	29407610	1	4	25	0	1	0	0	0	0	0	0	0	3394	1334	46	3		3	CHN2	7	29407610	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	246969	29407610	129731053	237	41646											
AVL9	23080	broad.mit.edu	37	chr7	32862811	32862811	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacaagaatttatagaatgGatcaaatatagtactaaacc	5	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32862811	T	T	32862811	1	4	25	0	1	0	0	0	0	0	0	0	1233	1189	41	3		3	AVL9	7	32862811	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3455201	32862811	126275852	238	41647											
ELMO1	9844	broad.mit.edu	37	chr7	37256173	37256173	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagaacaaaccacagactGaagccaaaagaagagattaa	7	9	0	5			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37256173	T	T	37256173	1	4	25	0	1	0	0	0	0	0	0	0	5107	1305	45	3		3	ELMO1	7	37256173	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	4393362	37256173	121882490	239	41648											
ABCA13	154664	broad.mit.edu	37	chr7	48684282	48684282	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctagctgacttgttcaaaGttatagagaacaataaaacc	7	8	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48684282	C	C	48684282	3	2	25	1	0	0	0	0	1	0	0	0	31	1029	36	4	15084	4	ABCA13	7	48684282	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	11428109	48684282	110454381	240	41649											
ZNF716	441234	broad.mit.edu	37	chr7	57529005	57529005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtggcaaagtctttagcCgctcaacacttactaactac	6	12	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57529005	A	A	57529005	3	1	25	1	0	0	0	0	1	0	0	0	18247	652	23	1	852	1	ZNF716	7	57529005	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	8844723	57529005	101609658	241	41650											
MLXIPL	51085	broad.mit.edu	37	chr7	73013691	73013691	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgttttgtccagttctgctTcacggggtccctcccagagg	11	14	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73013691	C	C	73013691	1	2	25	0	1	0	0	0	0	0	0	0	9730	1798	62	5		5	MLXIPL	7	73013691	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	15484686	73013691	86124972	242	41651											
AKAP9	10142	broad.mit.edu	37	chr7	91609624	91609624	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaagtgaaatttcaaccAcagcagatgactgcagttca	9	8	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91609624	T	T	91609624	3	4	25	1	0	0	0	0	1	0	0	0	459	159	6	5	338	5	AKAP9	7	91609624	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	18595933	91609624	67529039	243	41652											
GATAD1	57798	broad.mit.edu	37	chr7	92080020	92080020	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgtattttcatagcccatCaaagctcctgagtcagtttc	6	10	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92080020	G	G	92080020	3	3	25	1	0	0	0	0	1	0	0	0	6321	816	29	4	391	4	GATAD1	7	92080020	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	470396	92080020	67058643	244	41653											
SAMD9L	219285	broad.mit.edu	37	chr7	92762064	92762064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttgtgggaatcgtctacttCctgcactcaagaccttttca	7	11	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92762064	A	A	92762064	3	1	25	1	0	0	0	0	1	0	0	0	13938	855	30	3	1537	3	SAMD9L	7	92762064	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	682044	92762064	66376599	245	41654											
GNG11	2791	broad.mit.edu	37	chr7	93555509	93555509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacccctttaaagaaaaagGcagctgtgttatttcataaa	7	7	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93555509	T	T	93555509	3	4	25	1	0	0	0	0	1	0	0	0	6588	1203	42	3	209	3	GNG11	7	93555509	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	793445	93555509	65583154	246	41655											
PPP1R9A	55607	broad.mit.edu	37	chr7	94791228	94791228	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggatggaatcagcttggtgGgtgtgacacagaattttgca	14	5	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94791228	C	C	94791228	3	2	25	1	0	0	0	0	1	0	0	0	12479	1232	43	4	1713	4	PPP1R9A	7	94791228	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1235719	94791228	64347435	247	41656											
TRRAP	8295	broad.mit.edu	37	chr7	98495465	98495465	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgaaagtcaacccggaGcgtgaggacagtgagactcg	15	9	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98495465	C	C	98495465	3	2	25	1	0	0	0	0	1	0	0	0	16726	962	34	4	635	4	TRRAP	7	98495465	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3704237	98495465	60643198	248	41657											
CYP3A5	1577	broad.mit.edu	37	chr7	99262907	99262907	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actccaaatgatgtgccagtAatcacatccatgctgtaggc	8	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99262907	G	G	99262907	2	3	25	1	0	0	0	0	0	0	0	1	4213	358	13	5		5	CYP3A5	7	99262907	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	767442	99262907	59875756	249	41658											
SPDYE3	441272	broad.mit.edu	37	chr7	99918570	99918570	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaactttattccagtgctaaTggcagacatcaggaaggagg	12	7	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99918570	C	C	99918570	1	2	25	0	1	0	0	0	0	0	0	0	15148	1479	51	5		5	SPDYE3	7	99918570	3'UTR	SNP	T	TCGA-05-4430-01A-02D-1265-08	655663	99918570	59220093	250	41659											
ZCWPW1	55063	broad.mit.edu	37	chr7	100014867	100014868	+	Intron	DNP	CC	AA	AA													gaaaaagccactctattactCcctaacattttctctaaagt							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	100014868	AA	AA	100014867	1	1	25	0	1	0	0	0	0	0	0	0	17723	870	30	3		3	ZCWPW1	7	100014867	Intron	DNP	CC	TCGA-05-4430-01A-02D-1265-08	96297	100014867	59123796	251	41660											
MYL10	93408	broad.mit.edu	37	chr7	101265451	101265451	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctccttcaccatggcctCcagttcctcgttcttgacat	7	16	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101265451	A	A	101265451	4	1	25	1	0	0	0	0	0	1	0	0	10138	864	30	3	317	3	MYL10	7	101265451	Nonsense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1250584	101265451	57873212	252	41661											
LAMB1	3912	broad.mit.edu	37	chr7	107603427	107603427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaactccaaataagcccCttcaggcactcggacgaagc	8	13	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107603427	A	A	107603427	3	1	25	1	0	0	0	0	1	0	0	0	8682	681	24	2	3660	2	LAMB1	7	107603427	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	6337976	107603427	51535236	253	41662											
CTTNBP2	83992	broad.mit.edu	37	chr7	117423018	117423018	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaatctcacacagtctAtggattttaatagaaagcca	7	9	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117423018	G	G	117423018	1	3	25	0	1	0	0	0	0	0	0	0	4079	464	16	5		5	CTTNBP2	7	117423018	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	9819591	117423018	41715645	254	41663											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651440	121651440	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgttgcttgacaatcagatCctcaacactacccctgctgc	6	14	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121651440	A	A	121651440	2	1	25	1	0	0	0	0	0	0	0	1	12922	845	30	3		3	PTPRZ1	7	121651440	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	4228422	121651440	37487223	255	41664											
IQUB	154865	broad.mit.edu	37	chr7	123151956	123151956	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaaacgcattcattcttCaaaatgagaaaatgaaatag	6	5	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123151956	A	A	123151956	1	1	25	0	1	0	0	0	0	0	0	0	7890	841	29	3		3	IQUB	7	123151956	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1500516	123151956	35986707	256	41665											
LRGUK	136332	broad.mit.edu	37	chr7	133948743	133948743	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtagactagcacttgatgtCtgatcctaacatggaaaacc	9	9	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133948743	A	A	133948743	1	1	25	0	1	0	0	0	0	0	0	0	9030	928	32	3		3	LRGUK	7	133948743	3'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	10796787	133948743	25189920	257	41666											
DGKI	9162	broad.mit.edu	37	chr7	137284460	137284460	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagagtacaggtgagaaggTagatgacagatggtcaggat	17	3	1	5			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137284460	C	C	137284460	1	2	25	0	1	0	0	0	0	0	0	0	4511	1653	57	5		5	DGKI	7	137284460	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	3335717	137284460	21854203	258	41667											
MGAM	8972	broad.mit.edu	37	chr7	141727038	141727038	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atatctagaggtaaacttagGatgtcaagattatgactcag	9	5	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141727038	T	T	141727038	1	4	25	0	1	0	0	0	0	0	0	0	9634	1189	41	3		3	MGAM	7	141727038	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	4442578	141727038	17411625	259	41668											
PRSS1	5644	broad.mit.edu	37	chr7	142460174	142460174	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggacttatgttctggagtCctctccaggggctgtgttcc	12	11	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142460174	T	T	142460174	1	4	25	0	1	0	0	0	0	0	0	0	12720	870	30	4		4	PRSS1	7	142460174	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	733136	142460174	16678489	260	41669											
CLCN1	1180	broad.mit.edu	37	chr7	143013364	143013364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctggtggggtagtgaccCccagtaccagtatatgccct	12	11	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143013364	A	A	143013364	3	1	25	1	0	0	0	0	1	0	0	0	3493	623	22	2	61	2	CLCN1	7	143013364	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	553190	143013364	16125299	261	41670											
ABCB8	11194	broad.mit.edu	37	chr7	150732736	150732736	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgctgtcgacacgcctcacGctgctgctgatggtggccac	12	14	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150732736	C	C	150732736	2	2	25	1	0	0	0	0	0	0	0	1	47	1074	38	4		4	ABCB8	7	150732736	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	7719372	150732736	8405927	262	41671											
ABCF2	10061	broad.mit.edu	37	chr7	150915920	150915920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctctgggcctgccgggCcagcttggcactgccatgac	13	15	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150915920	A	A	150915920	3	1	25	1	0	0	0	0	1	0	0	0	66	739	26	3	883	3	ABCF2	7	150915920	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	183184	150915920	8222743	263	41672											
HTR5A	3361	broad.mit.edu	37	chr7	154862977	154862977	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggatcgcgtgcgacgtgcTttgctgcacggccagcatct	13	12	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154862977	C	C	154862977	3	2	25	1	0	0	0	0	1	0	0	0	7520	1609	56	5	370	5	HTR5A	7	154862977	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	3947057	154862977	4275686	264	41673											
PTPRN2	5799	broad.mit.edu	37	chr7	157929352	157929352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacgtcatcttacctcttGgtaaagtctatcatcgtcgt	8	10	5	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157929352	T	T	157929352	3	4	25	1	0	0	0	0	1	0	0	0	12916	1357	47	2	1943	2	PTPRN2	7	157929352	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3066375	157929352	1209311	265	41674											
MYOM2	9172	broad.mit.edu	37	chr8	2027068	2027068	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggaagctttggctgttttGtgtgtgatttgttgtctctt	12	5	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2027068	C	C	2027068	1	2	25	0	1	0	0	0	0	0	0	0	10186	1392	48	4		4	MYOM2	8	2027068	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08		2027068	144336954	266	41675											
CSMD1	64478	broad.mit.edu	37	chr8	2949091	2949091	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcatggtcagtggaccagCggagatataactgattactc	12	8	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2949091	T	T	2949091	3	4	25	1	0	0	0	0	1	0	0	0	3978	768	27	4	3554	4	CSMD1	8	2949091	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	922023	2949091	143414931	267	41676											
RP1L1	94137	broad.mit.edu	37	chr8	10470413	10470413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacttgggccctggctgccCgcctcggccaaagacttccc	10	17	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10470413	A	A	10470413	3	1	25	1	0	0	0	0	1	0	0	0	13644	652	23	1	6011	1	RP1L1	8	10470413	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	7521322	10470413	135893609	268	41677											
C8orf79	57604	broad.mit.edu	37	chr8	12878877	12878877	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacctgttttgcaaatatttCtaaggaaggcgaggaagaat	10	5	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12878877	A	A	12878877	3	1	25	1	0	0	0	0	1	0	0	0	2464	913	32	3	699	3	C8orf79	8	12878877	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2408464	12878877	133485145	269	41678											
CNOT7	29883	broad.mit.edu	37	chr8	17090038	17090038	+	Missense_Mutation	SNP	T	A	A													aactgttctgccacctcctgTaatccaccctagaaaaaata							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17090038	A	A	17090038	3	1	25	1	0	0	0	0	1	0	0	0	3656	1635	57	5	244	5	CNOT7	8	17090038	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	4211161	17090038	129273984	270	41679	219	2									
CNOT7	29883	broad.mit.edu	37	chr8	17090042	17090042	+	Missense_Mutation	SNP	C	A	A													gttctgccacctcctgtaatCcaccctagaaaaaataaaaa							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17090042	A	A	17090042	3	1	25	1	0	0	0	0	1	0	0	0	3656	855	30	3	248	3	CNOT7	8	17090042	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4	17090042	129273980	271	41680	219	2									
DPYSL2	1808	broad.mit.edu	37	chr8	26439594	26439594	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtgtaactcatgatatAcagatgtatttgaacacttt	7	5	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26439594	G	G	26439594	1	3	25	0	1	0	0	0	0	0	0	0	4787	406	14	5		5	DPYSL2	8	26439594	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	9349552	26439594	119924428	272	41681											
AGPAT6	137964	broad.mit.edu	37	chr8	41476485	41476485	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaggcagggaggacttgtGgacctgctgtggtaagttta	16	7	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41476485	A	A	41476485	2	1	25	1	0	0	0	0	0	0	0	1	391	1335	47	4		4	AGPAT6	8	41476485	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	15036891	41476485	104887537	273	41682											
ANK1	286	broad.mit.edu	37	chr8	41574386	41574386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggccacagcactgcagcCccgcctggaatgaggatggg	14	14	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41574386	A	A	41574386	1	1	25	0	1	0	0	0	0	0	0	0	620	638	22	2		2	ANK1	8	41574386	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	97901	41574386	104789636	274	41683											
SNTG1	54212	broad.mit.edu	37	chr8	51362272	51362272	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcgtttcaaaaatctcCaaggaacaaagaggtaatat	8	6	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51362272	G	G	51362272	2	3	25	1	0	0	0	0	0	0	0	1	14988	581	21	4		4	SNTG1	8	51362272	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	9787886	51362272	95001750	275	41684											
ST18	9705	broad.mit.edu	37	chr8	53028757	53028757	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctcctcaaagctcagtcgTggcaaccccgtgggtagatg	12	12	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53028757	A	A	53028757	1	1	25	0	1	0	0	0	0	0	0	0	15330	1711	59	5		5	ST18	8	53028757	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	1666485	53028757	93335265	276	41685											
RP1	6101	broad.mit.edu	37	chr8	55609441	55609441	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggacaagccaaggtcaagAataagatcgttcttctgaca	10	8	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55609441	T	T	55609441	1	4	25	0	1	0	0	0	0	0	0	0	13643	261	9	5		5	RP1	8	55609441	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2580684	55609441	90754581	277	41686											
TRPA1	8989	broad.mit.edu	37	chr8	72942164	72942164	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatcctcttcaatgatgcaTgtttctggacctcagcaatg	7	11	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72942164	A	A	72942164	3	1	25	1	0	0	0	0	1	0	0	0	16702	1464	51	5	466	5	TRPA1	8	72942164	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	17332723	72942164	73421858	278	41687											
ZFHX4	79776	broad.mit.edu	37	chr8	77764254	77764254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaattcagatgcaactacaGcacgaattacaacagcaagc	6	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77764254	T	T	77764254	3	4	25	1	0	0	0	0	1	0	0	0	17761	962	34	3	5131	3	ZFHX4	8	77764254	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4822090	77764254	68599768	279	41688											
CA13	377677	broad.mit.edu	37	chr8	86158002	86158002	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgggcccctccccgctcCctcctctttctcgctgctca	6	23	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86158002	T	T	86158002	1	4	25	0	1	0	0	0	0	0	0	0	2540	638	22	4		4	CA13	8	86158002	5'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	8393748	86158002	60206020	280	41689											
SLC7A13	157724	broad.mit.edu	37	chr8	87242421	87242421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggacacaaaaattcctGcaccaatgatattaataagc	8	8	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87242421	T	T	87242421	3	4	25	1	0	0	0	0	1	0	0	0	14809	1319	46	3	1342	3	SLC7A13	8	87242421	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1084419	87242421	59121601	281	41690											
ESRP1	54845	broad.mit.edu	37	chr8	95683790	95683790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttagagactgtatacGccttcgaggtcttccctatg	9	9	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95683790	T	T	95683790	3	4	25	1	0	0	0	0	1	0	0	0	5300	1087	38	3	1385	3	ESRP1	8	95683790	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	8441369	95683790	50680232	282	41691											
TRPS1	7227	broad.mit.edu	37	chr8	116616574	116616574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggaatatcggaagtcaCagaactgacaattatagctc	8	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116616574	A	A	116616574	3	1	25	1	0	0	0	0	1	0	0	0	16718	478	17	3	2278	3	TRPS1	8	116616574	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	20932784	116616574	29747448	283	41692											
SNTB1	6641	broad.mit.edu	37	chr8	121706136	121706136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacatagggcgtggcttctCgcatgtacttcactgcaagg	11	11	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121706136	A	A	121706136	3	1	25	1	0	0	0	0	1	0	0	0	14986	884	31	3	1056	3	SNTB1	8	121706136	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	5089562	121706136	24657886	284	41693											
FER1L6	654463	broad.mit.edu	37	chr8	125079972	125079972	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcaattaataaatcaagtAttgtggtgtcaataatattg	7	3	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125079972	T	T	125079972	1	4	25	0	1	0	0	0	0	0	0	0	5872	464	16	5		5	FER1L6	8	125079972	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	3373836	125079972	21284050	285	41694											
ADCY8	114	broad.mit.edu	37	chr8	131916424	131916424	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcagggacaatacttgtCttcctaaaaagtagaaagaa	7	8	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131916424	A	A	131916424	1	1	25	0	1	0	0	0	0	0	0	0	300	928	32	3		3	ADCY8	8	131916424	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	6836452	131916424	14447598	286	41695											
TG	7038	broad.mit.edu	37	chr8	133953768	133953768	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgttgcgatggcttcgtCctcacacaggttcaaggagg	13	10	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133953768	A	A	133953768	2	1	25	1	0	0	0	0	0	0	0	1	15936	842	30	3		3	TG	8	133953768	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	2037344	133953768	12410254	287	41696											
FAM135B	51059	broad.mit.edu	37	chr8	139180236	139180236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggcagcgggggcatgCtagtgaggtactccgagttc	16	10	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139180236	A	A	139180236	3	1	25	1	0	0	0	0	1	0	0	0	5495	797	28	3	3096	3	FAM135B	8	139180236	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	5226468	139180236	7183786	288	41697											
COL22A1	169044	broad.mit.edu	37	chr8	139701046	139701046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccctcctacttagtaaaCcccttctgattgctggttcc	5	15	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139701046	A	A	139701046	1	1	25	0	1	0	0	0	0	0	0	0	3713	522	18	3		3	COL22A1	8	139701046	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	520810	139701046	6662976	289	41698											
SPATC1	375686	broad.mit.edu	37	chr8	145095635	145095635	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacacacaggcccagcccagTgccgcccaggaacaagtggt	12	15	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145095635	A	A	145095635	3	1	25	1	0	0	0	0	1	0	0	0	15133	1693	59	5	943	5	SPATC1	8	145095635	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	5394589	145095635	1268387	290	41699											
HEATR7A	727957	broad.mit.edu	37	chr8	145235188	145235188	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcgcaggctgcaccctggGaccctgccacactgcgccgt	12	18	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145235188	T	T	145235188	2	4	25	1	0	0	0	0	0	0	0	1	7101	1161	41	3		3	HEATR7A	8	145235188	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	139553	145235188	1128834	291	41700											
PSIP1	11168	broad.mit.edu	37	chr9	15470075	15470075	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatgtaaaagctaaaaatgTtttccttaaaataagtcaat	4	5	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15470075	C	C	15470075	1	2	25	0	1	0	0	0	0	0	0	0	12769	1740	60	5		5	PSIP1	9	15470075	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08		15470075	125743356	292	41701											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18906925	18906925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacagtatgttccaacccCaaagaaccttctgcaaattc	4	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18906925	A	A	18906925	1	1	25	0	1	0	0	0	0	0	0	0	274	609	21	2		2	ADAMTSL1	9	18906925	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3436850	18906925	122306506	293	41702											
ACER2	340485	broad.mit.edu	37	chr9	19446059	19446059	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtgtatgagtctggagTcaggagagaagcctgggtgg	19	4	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19446059	C	C	19446059	1	2	25	0	1	0	0	0	0	0	0	0	139	1682	58	5		5	ACER2	9	19446059	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	539134	19446059	121767372	294	41703											
KIAA1797	54914	broad.mit.edu	37	chr9	20717833	20717833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtcctaaaggaaaatgGtttttcagaaaagattcacc	8	7	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20717833	T	T	20717833	3	4	25	1	0	0	0	0	1	0	0	0	8328	1261	44	3	104	3	KIAA1797	9	20717833	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1271774	20717833	120495598	295	41704											
KIAA1797	54914	broad.mit.edu	37	chr9	20926351	20926351	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtttccatggtacttgatAcactcttggtcattgtggat	11	7	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20926351	T	T	20926351	3	4	25	1	0	0	0	0	1	0	0	0	8328	391	14	5	3111	5	KIAA1797	9	20926351	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	208518	20926351	120287080	296	41705											
TLN1	7094	broad.mit.edu	37	chr9	35725188	35725188	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggagaagctgatggaaggGgatgtggtggtccttgatga	19	3	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35725188	C	C	35725188	1	2	25	0	1	0	0	0	0	0	0	0	16070	1247	43	4		4	TLN1	9	35725188	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	14798837	35725188	105488243	297	41706											
CCIN	881	broad.mit.edu	37	chr9	36170205	36170205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaataagacgctggtgtttGccagcaacaagctggtgggc	13	10	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36170205	T	T	36170205	3	4	25	1	0	0	0	0	1	0	0	0	2906	1319	46	3	708	3	CCIN	9	36170205	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	445017	36170205	105043226	298	41707											
FAM75A2	642265	broad.mit.edu	37	chr9	39888226	39888226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagatcctaggctctggCaggaaagtttttggaagaat	11	7	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39888226	A	A	39888226	3	1	25	1	0	0	0	0	1	0	0	0	5671	711	25	3	5287	3	FAM75A2	9	39888226	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3718021	39888226	101325205	299	41708											
FLJ46321	389763	broad.mit.edu	37	chr9	84606311	84606311	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttaccaccggaagattGcactgtgactcagtctaaat	8	10	2	2	rs147400236	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84606311	T	T	84606311	3	4	25	1	0	0	0	0	1	0	0	0	5990	1319	46	3	940	3	FLJ46321	9	84606311	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	44718085	84606311	56607120	300	41709											
FLJ46321	389763	broad.mit.edu	37	chr9	84608122	84608122	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattaaaactttccgtatgAggatgctgtggggccttccc	10	9	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84608122	T	T	84608122	3	4	25	1	0	0	0	0	1	0	0	0	5990	295	11	5	2751	5	FLJ46321	9	84608122	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	1811	84608122	56605309	301	41710											
KIF27	55582	broad.mit.edu	37	chr9	86503486	86503486	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacagagtctggcttctgAatccatgaacgacttctaca	7	11	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86503486	C	C	86503486	3	2	25	1	0	0	0	0	1	0	0	0	8366	242	9	5	2248	5	KIF27	9	86503486	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	1895364	86503486	54709945	302	41711											
NTRK2	4915	broad.mit.edu	37	chr9	87636230	87636230	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacgtgcccccaggaggtgTatgagctgatgctggggtgc	17	10	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87636230	A	A	87636230	3	1	25	1	0	0	0	0	1	0	0	0	10802	1638	57	5	2540	5	NTRK2	9	87636230	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	1132744	87636230	53577201	303	41712											
AUH	549	broad.mit.edu	37	chr9	94087694	94087694	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaggtcagcacctgcaaaGtattttatttacaaatataa	5	6	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94087694	A	A	94087694	1	1	25	0	1	0	0	0	0	0	0	0	1224	1044	36	4		4	AUH	9	94087694	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	6451464	94087694	47125737	304	41713											
ZNF484	83744	broad.mit.edu	37	chr9	95637296	95637296	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaacaaataagaactcaCcagggacttggtcatttttg	9	7	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95637296	A	A	95637296	5	1	25	1	0	0	0	0	0	0	1	0	18064	521	18	3	2558	3	ZNF484	9	95637296	Splice_Site	SNP	C	TCGA-05-4430-01A-02D-1265-08	1549602	95637296	45576135	305	41714											
KIAA1529	57653	broad.mit.edu	37	chr9	100013024	100013024	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtatttaataagtatttgCtgattaacaggttgtgcaga	10	3	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100013024	A	A	100013024	1	1	25	0	1	0	0	0	0	0	0	0	8310	812	28	3		3	KIAA1529	9	100013024	5'Flank	SNP	C	TCGA-05-4430-01A-02D-1265-08	4375728	100013024	41200407	306	41715											
COL15A1	1306	broad.mit.edu	37	chr9	101749533	101749533	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccactggcagtcatgctgTgtacgtgcaaaccgtggctt	11	11	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101749533	A	A	101749533	1	1	25	0	1	0	0	0	0	0	0	0	3704	1711	59	5		5	COL15A1	9	101749533	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	1736509	101749533	39463898	307	41716											
COL15A1	1306	broad.mit.edu	37	chr9	101784479	101784479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacacaggtgtaagaccagGgatgcggccaaaacagccac	11	12	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101784479	T	T	101784479	1	4	25	0	1	0	0	0	0	0	0	0	3704	1247	43	2		2	COL15A1	9	101784479	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	34946	101784479	39428952	308	41717											
TEX10	54881	broad.mit.edu	37	chr9	103064619	103064619	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagagtaatctgagaactGcacccaaatcactatgctac	6	11	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103064619	A	A	103064619	1	1	25	0	1	0	0	0	0	0	0	0	15894	1334	46	4		4	TEX10	9	103064619	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1280140	103064619	38148812	309	41718											
TMEFF1	8577	broad.mit.edu	37	chr9	103279049	103279049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgaagatgcagaaaatGttgggtgagttggttgaggg	18	1	0	6			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103279049	T	T	103279049	3	4	25	1	0	0	0	0	1	0	0	0	16136	1377	48	3	574	3	TMEFF1	9	103279049	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	214430	103279049	37934382	310	41719											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112898590	112898590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccccacatcccatggacCatccctccgctttctattca	3	19	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112898590	A	A	112898590	3	1	25	1	0	0	0	0	1	0	0	0	11504	594	21	2	796	2	PALM2-AKAP2	9	112898590	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	9619541	112898590	28314841	311	41720											
PAPPA	5069	broad.mit.edu	37	chr9	119139782	119139782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaggtgaggtggttaaAtgtaatgccaacacggaggt	15	4	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119139782	G	G	119139782	1	3	25	0	1	0	0	0	0	0	0	0	11526	116	4	5		5	PAPPA	9	119139782	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	6241192	119139782	22073649	312	41721											
OR1L8	138881	broad.mit.edu	37	chr9	125330565	125330565	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtgagagacagaaaactCaagaagaaatacataggggt	11	5	2	5			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125330565	A	A	125330565	3	1	25	1	0	0	0	0	1	0	0	0	11061	825	29	3	741	3	OR1L8	9	125330565	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	6190783	125330565	15882866	313	41722											
STRBP	55342	broad.mit.edu	37	chr9	125902103	125902103	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagagcaagatggtactaAatctgtaagtccttggttaa	11	5	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125902103	G	G	125902103	1	3	25	0	1	0	0	0	0	0	0	0	15445	29	1	5		5	STRBP	9	125902103	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	571538	125902103	15311328	314	41723											
RABEPK	10244	broad.mit.edu	37	chr9	127975856	127975856	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaataaactttcatgcacAcacacacacatatatataaa	1	10	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127975856	G	G	127975856	1	3	25	0	1	0	0	0	0	0	0	0	13071	174	6	5		5	RABEPK	9	127975856	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2073753	127975856	13237575	315	41724											
GAPVD1	26130	broad.mit.edu	37	chr9	128121653	128121653	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgactgtttgtgtaccatAttttctgaaatgaatgttta	8	4	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128121653	G	G	128121653	1	3	25	0	1	0	0	0	0	0	0	0	6301	464	16	5		5	GAPVD1	9	128121653	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	145797	128121653	13091778	316	41725											
C9orf50	375759	broad.mit.edu	37	chr9	132382865	132382865	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaacatgcttggccccgCactcagctcaccgcaccctc	7	20	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132382865	A	A	132382865	1	1	25	0	1	0	0	0	0	0	0	0	2513	725	25	3		3	C9orf50	9	132382865	5'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	4261212	132382865	8830566	317	41726											
SDCCAG3	10807	broad.mit.edu	37	chr9	139304594	139304594	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacatagcacataaaggcCggccgaatgccgaagaaggg	14	10	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139304594	A	A	139304594	2	1	25	1	0	0	0	0	0	0	0	1	14071	639	23	1		1	SDCCAG3	9	139304594	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	6921729	139304594	1908837	318	41727											
C9orf86	55684	broad.mit.edu	37	chr9	139707383	139707383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaccccaaagccaccttcGcccttaggtttggcccagtc	7	17	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139707383	T	T	139707383	1	4	25	0	1	0	0	0	0	0	0	0	2528	1102	38	3		3	C9orf86	9	139707383	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	402789	139707383	1506048	319	41728											
PNPLA7	375775	broad.mit.edu	37	chr9	140356755	140356755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaacacacgtaggccaggCgcgtctgaatctctgccatg	11	14	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140356755	A	A	140356755	3	1	25	1	0	0	0	0	1	0	0	0	12265	768	27	3	527	3	PNPLA7	9	140356755	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	649372	140356755	856676	320	41729											
LARP4B	23185	broad.mit.edu	37	chr10	871318	871318	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggcattacataacatgCatactgacatggaatagcta	7	8	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	871318	A	A	871318	1	1	25	0	1	0	0	0	0	0	0	0	8703	725	25	3		3	LARP4B	10	871318	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08		871318	134663429	321	41730											
CUBN	8029	broad.mit.edu	37	chr10	17024512	17024512	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagtcttgtggttcaagatCaaagtcagtgaagttcaaga	11	5	5	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17024512	A	A	17024512	3	1	25	1	0	0	0	0	1	0	0	0	4084	826	29	3	6353	3	CUBN	10	17024512	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	16153194	17024512	118510235	322	41731											
C10orf140	387640	broad.mit.edu	37	chr10	21804176	21804176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacaaatccccatctctcCcaataatgagtgatggtgga	8	12	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21804176	A	A	21804176	3	1	25	1	0	0	0	0	1	0	0	0	1606	623	22	2	154	2	C10orf140	10	21804176	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4779664	21804176	113730571	323	41732											
C10orf68	79741	broad.mit.edu	37	chr10	33113436	33113436	+	Intron	DEL	T	-	-													gtgttttgaaatctgtttacTtttttatagagactgatgaa							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33113436	-	-	33113436	6	5	25	0	1	1	0	1	0	0	0	0	1624	1624	56	0		0	C10orf68	10	33113436	Intron	DEL	T	TCGA-05-4430-01A-02D-1265-08	11309260	33113436	102421311	324	41733											
CXCL12	6387	broad.mit.edu	37	chr10	44871272	44871272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagcactgctcccccaCggaagtctgagcccctgccc	9	18	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44871272	A	A	44871272	1	1	25	0	1	0	0	0	0	0	0	0	4113	551	19	3		3	CXCL12	10	44871272	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	11757836	44871272	90663475	325	41734											
FAM21C	253725	broad.mit.edu	37	chr10	46221239	46221239	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttaccgcaggattgtccaCgccactgattggatcgattg	11	10	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46221239	T	T	46221239	1	4	25	0	1	0	0	0	0	0	0	0	5589	551	19	4		4	FAM21C	10	46221239	5'Flank	SNP	C	TCGA-05-4430-01A-02D-1265-08	1349967	46221239	89313508	326	41735											
FAM13C	220965	broad.mit.edu	37	chr10	61112108	61112108	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacttgaagttgcccatgctGggtcgcaatacgctgtccac	11	12	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61112108	C	C	61112108	2	2	25	1	0	0	0	0	0	0	0	1	5500	1335	47	4		4	FAM13C	10	61112108	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	14890869	61112108	74422639	327	41736											
SLC16A9	220963	broad.mit.edu	37	chr10	61414391	61414391	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacctcgtaatctgaggctCtcaggattagaatttgtaat	8	8	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61414391	A	A	61414391	1	1	25	0	1	0	0	0	0	0	0	0	14528	928	32	3		3	SLC16A9	10	61414391	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	302283	61414391	74120356	328	41737											
TET1	80312	broad.mit.edu	37	chr10	70404986	70404986	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctggctttaactgcagtTccattccacattcttcacac	5	14	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70404986	G	G	70404986	3	3	25	1	0	0	0	0	1	0	0	0	15891	1783	62	5	2510	5	TET1	10	70404986	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	8990595	70404986	65129761	329	41738											
TSPAN15	23555	broad.mit.edu	37	chr10	71265915	71265915	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcatctacgtgcggggCtgcaccaacgccgtgatcat	12	12	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71265915	A	A	71265915	2	1	25	1	0	0	0	0	0	0	0	1	16764	784	28	3		3	TSPAN15	10	71265915	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	860929	71265915	64268832	330	41739											
ECD	11319	broad.mit.edu	37	chr10	74923762	74923762	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacaatgcagaagtaacatCtgaactcttttagatggttc	8	7	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74923762	A	A	74923762	1	1	25	0	1	0	0	0	0	0	0	0	4928	928	32	3		3	ECD	10	74923762	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3657847	74923762	60610985	331	41740											
FUT11	170384	broad.mit.edu	37	chr10	75532609	75532609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttacctccaccttcagtcGccactcggattacccgctgt	6	17	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75532609	A	A	75532609	3	1	25	1	0	0	0	0	1	0	0	0	6163	1087	38	4	520	4	FUT11	10	75532609	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	608847	75532609	60002138	332	41741											
MYST4	23522	broad.mit.edu	37	chr10	76781967	76781967	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagattgacgaaaccacAgtcagttgccataaagagaa	8	10	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76781967	T	T	76781967	3	4	25	1	0	0	0	0	1	0	0	0	10199	188	7	5	3404	5	MYST4	10	76781967	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	1249358	76781967	58752780	333	41742											
SFTPA2	729238	broad.mit.edu	37	chr10	81318891	81318891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcactatgaggacagactcTccaggatgcgccatcataag	11	11	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81318891	A	A	81318891	1	1	25	0	1	0	0	0	0	0	0	0	14303	1566	54	5		5	SFTPA2	10	81318891	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	4536924	81318891	54215856	334	41743											
SFTPA1	653509	broad.mit.edu	37	chr10	81371930	81371930	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatgatggcgcatcctggAgagtctgtcctcatagtgcc	11	11	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81371930	T	T	81371930	1	4	25	0	1	0	0	0	0	0	0	0	14302	319	11	5		5	SFTPA1	10	81371930	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	53039	81371930	54162817	335	41744											
CDHR1	92211	broad.mit.edu	37	chr10	85973997	85973997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagaagtctaacaaggtcCtgccaatgcggcgggtgctc	12	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85973997	A	A	85973997	3	1	25	1	0	0	0	0	1	0	0	0	3148	680	24	2	2266	2	CDHR1	10	85973997	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4602067	85973997	49560750	336	41745											
GRID1	2894	broad.mit.edu	37	chr10	87373323	87373323	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggcgctggcatggctGgtgaggtcacagcggcccat	17	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87373323	T	T	87373323	2	4	25	1	0	0	0	0	0	0	0	1	6837	1335	47	2		2	GRID1	10	87373323	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1399326	87373323	48161424	337	41746											
BTAF1	9044	broad.mit.edu	37	chr10	93749274	93749274	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtagctcactttgtgtggacCcatatctaactccttgtgtc	8	11	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93749274	G	G	93749274	3	3	25	1	0	0	0	0	1	0	0	0	1545	623	22	4	2869	4	BTAF1	10	93749274	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	6375951	93749274	41785473	338	41747											
CYP2C19	1557	broad.mit.edu	37	chr10	96534881	96534881	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcatggtggtgctgcatGgatatgaagtggtgaaggaa	16	4	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96534881	T	T	96534881	4	4	25	1	0	0	0	0	0	1	0	0	4199	1349	47	2	241	2	CYP2C19	10	96534881	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2785607	96534881	38999866	339	41748											
DNTT	1791	broad.mit.edu	37	chr10	98088687	98088687	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtgtaatgaccatctaatCaattctcaattatttgtggc	6	7	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98088687	A	A	98088687	1	1	25	0	1	0	0	0	0	0	0	0	4720	841	29	3		3	DNTT	10	98088687	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1553806	98088687	37446060	340	41749											
ABCC2	1244	broad.mit.edu	37	chr10	101603415	101603415	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggaggcaaggattgtcTttcttacacttttccttact	7	10	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101603415	C	C	101603415	1	2	25	0	1	0	0	0	0	0	0	0	53	1624	56	5		5	ABCC2	10	101603415	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	3514728	101603415	33931332	341	41750											
GBF1	8729	broad.mit.edu	37	chr10	104119880	104119880	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtaatgcagagcaggctAggcaaagccagcagactagt	13	8	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104119880	T	T	104119880	1	4	25	0	1	0	0	0	0	0	0	0	6333	435	15	5		5	GBF1	10	104119880	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2516465	104119880	31414867	342	41751											
TMEM180	79847	broad.mit.edu	37	chr10	104232541	104232541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggggggatgtgtgttccCctgttggcttctggccttgt	16	8	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104232541	A	A	104232541	1	1	25	0	1	0	0	0	0	0	0	0	16222	638	22	2		2	TMEM180	10	104232541	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	112661	104232541	31302206	343	41752											
DMBT1	1755	broad.mit.edu	37	chr10	124357627	124357627	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggtcaaggtgggcccctctCtttttcatgtccctgtgggt	13	11	3	0	rs3980983		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124357627	G	G	124357627	1	3	25	0	1	0	0	0	0	0	0	0	4617	928	32	4		4	DMBT1	10	124357627	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	20125086	124357627	11177120	344	41753											
PTDSS2	81490	broad.mit.edu	37	chr11	488416	488416	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccctcattctccccggggGgcagtgggtgcaggctgagg	16	14	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	488416	A	A	488416	1	1	25	0	1	0	0	0	0	0	0	0	12843	1247	43	4		4	PTDSS2	11	488416	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08		488416	134518100	345	41754											
LSP1	4046	broad.mit.edu	37	chr11	1905541	1905541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccgagtccctaaaccgctCcatagagaagaggtctgtct	10	12	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1905541	A	A	1905541	3	1	25	1	0	0	0	0	1	0	0	0	9150	855	30	3	645	3	LSP1	11	1905541	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1417125	1905541	133100975	346	41755											
OR52K1	390036	broad.mit.edu	37	chr11	4510393	4510393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatgcttgccatattctGgttcagggatcaggagatca	10	8	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4510393	T	T	4510393	3	4	25	1	0	0	0	0	1	0	0	0	11217	1357	47	2	265	2	OR52K1	11	4510393	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2604852	4510393	130496123	347	41756											
OR51F2	119694	broad.mit.edu	37	chr11	4843600	4843600	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaagcactccaaatctAatcatcagctatttctgatt	4	10	5	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4843600	T	T	4843600	3	4	25	1	0	0	0	0	1	0	0	0	11191	362	13	5	987	5	OR51F2	11	4843600	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	333207	4843600	130162916	348	41757											
OR51L1	119682	broad.mit.edu	37	chr11	5020470	5020470	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccaccatgcttgctgtGttatggttggatgctccaga	10	11	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5020470	T	T	5020470	2	4	25	1	0	0	0	0	0	0	0	1	11196	1364	48	3		3	OR51L1	11	5020470	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	176870	5020470	129986046	349	41758											
OR52A5	390054	broad.mit.edu	37	chr11	5153561	5153561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggaatgagtgaataagCcacatttgaaaaagacaggc	11	7	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5153561	A	A	5153561	3	1	25	1	0	0	0	0	1	0	0	0	11204	740	26	3	641	3	OR52A5	11	5153561	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	133091	5153561	129852955	350	41759											
OR51V1	283111	broad.mit.edu	37	chr11	5221508	5221508	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattagtcaggatggaggaAtaacgtagtggattgcaaat	13	3	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5221508	G	G	5221508	2	3	25	1	0	0	0	0	0	0	0	1	11201	108	4	5		5	OR51V1	11	5221508	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	67947	5221508	129785008	351	41760											
TUB	7275	broad.mit.edu	37	chr11	8118969	8118969	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggaccgtgaggatgggaaGaaggtaaggttggtctgggc	19	5	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8118969	T	T	8118969	3	4	25	1	0	0	0	0	1	0	0	0	16868	933	33	3	1119	3	TUB	11	8118969	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2897461	8118969	126887547	352	41761											
USP47	55031	broad.mit.edu	37	chr11	11976835	11976835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactaaccggtagaaatacaGtgacagccaaacatgattat	7	9	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11976835	T	T	11976835	1	4	25	0	1	0	0	0	0	0	0	0	17205	1044	36	3		3	USP47	11	11976835	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3857866	11976835	123029681	353	41762											
ABCC8	6833	broad.mit.edu	37	chr11	17419905	17419905	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccattcggacttccagccatCtgttggcagctgtgaggaag	12	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17419905	G	G	17419905	3	3	25	1	0	0	0	0	1	0	0	0	58	913	32	4	1051	4	ABCC8	11	17419905	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	5443070	17419905	117586611	354	41763											
OR4C15	81309	broad.mit.edu	37	chr11	55322475	55322475	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcatcaatcactttatGtgtgacttgtacccgttact	6	9	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55322475	C	C	55322475	3	2	25	1	0	0	0	0	1	0	0	0	11142	1377	48	4	695	4	OR4C15	11	55322475	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	37902570	55322475	79684041	355	41764											
OR8I2	120586	broad.mit.edu	37	chr11	55860901	55860901	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatttatctattcactgttTtgggaaacctgggactgatc	8	8	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55860901	C	C	55860901	2	2	25	1	0	0	0	0	0	0	0	1	11334	1838	64	5		5	OR8I2	11	55860901	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	538426	55860901	79145615	356	41765											
SERPING1	710	broad.mit.edu	37	chr11	57369417	57369417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccaaagcagggaatacCctccattccagcctggtccc	7	18	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57369417	A	A	57369417	1	1	25	0	1	0	0	0	0	0	0	0	14229	638	22	2		2	SERPING1	11	57369417	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1508516	57369417	77637099	357	41766											
CTNND1	1500	broad.mit.edu	37	chr11	57563083	57563083	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctatatagcaccatccccaGgatgcaggagccggggcaga	12	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57563083	C	C	57563083	3	2	25	1	0	0	0	0	1	0	0	0	4053	1000	35	4	312	4	CTNND1	11	57563083	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	193666	57563083	77443433	358	41767											
OR5AN1	390195	broad.mit.edu	37	chr11	59132051	59132051	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatctacattacatctctGgcctggaacctctccctcat	6	14	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59132051	T	T	59132051	2	4	25	1	0	0	0	0	0	0	0	1	11237	1335	47	2		2	OR5AN1	11	59132051	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1568968	59132051	75874465	359	41768											
OR4D10	390197	broad.mit.edu	37	chr11	59245669	59245669	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatttcgtgccctgcatctAtgtctatgcccggcccttca	8	15	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59245669	G	G	59245669	3	3	25	1	0	0	0	0	1	0	0	0	11148	449	16	5	769	5	OR4D10	11	59245669	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	113618	59245669	75760847	360	41769											
STX5	6811	broad.mit.edu	37	chr11	62591579	62591579	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagtccctggggactttaaGatgccaatccacggggaaga	13	10	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62591579	A	A	62591579	1	1	25	0	1	0	0	0	0	0	0	0	15466	957	33	4		4	STX5	11	62591579	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3345910	62591579	72414937	361	41770											
MYEOV	26579	broad.mit.edu	37	chr11	69062910	69062910	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcctggaacagtctccctCctggtgtcattgtctccgtg	10	14	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69062910	T	T	69062910	3	4	25	1	0	0	0	0	1	0	0	0	10119	855	30	4	91	4	MYEOV	11	69062910	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	6471331	69062910	65943606	362	41771											
NOX4	50507	broad.mit.edu	37	chr11	89068944	89068944	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caattcattttcaaacttcaTgtaattatttgaaaatattt	2	5	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89068944	C	C	89068944	1	2	25	0	1	0	0	0	0	0	0	0	10653	1479	51	5		5	NOX4	11	89068944	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	20006034	89068944	45937572	363	41772											
FAT3	120114	broad.mit.edu	37	chr11	92525961	92525961	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaggagtttccttatcgaaGaaacttggcccgagtcattg	10	9	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92525961	T	T	92525961	3	4	25	1	0	0	0	0	1	0	0	0	5748	942	33	3	4670	3	FAT3	11	92525961	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3457017	92525961	42480555	364	41773											
FAT3	120114	broad.mit.edu	37	chr11	92535011	92535011	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccgggcgaggtggtagcCgtcctcagcacctgggacag	15	14	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92535011	A	A	92535011	2	1	25	1	0	0	0	0	0	0	0	1	5748	639	23	1		1	FAT3	11	92535011	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	9050	92535011	42471505	365	41774											
MMP8	4317	broad.mit.edu	37	chr11	102592588	102592588	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaagtgagttgcatcaTggtgtgctaccactggagag	13	6	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102592588	A	A	102592588	1	1	25	0	1	0	0	0	0	0	0	0	9762	1479	51	5		5	MMP8	11	102592588	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	10057577	102592588	32413928	366	41775											
NPAT	4863	broad.mit.edu	37	chr11	108057265	108057265	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtattgttgaatgagggcCagacaaagtggtactttttc	11	7	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108057265	T	T	108057265	3	4	25	1	0	0	0	0	1	0	0	0	10661	594	21	4	3657	4	NPAT	11	108057265	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	5464677	108057265	26949251	367	41776											
PIH1D2	120379	broad.mit.edu	37	chr11	111941514	111941514	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatgtggtgttagtagagAtggtagataaagctgcagtt	13	2	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111941514	T	T	111941514	1	4	25	0	1	0	0	0	0	0	0	0	12002	348	12	5		5	PIH1D2	11	111941514	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	3884249	111941514	23065002	368	41777											
DSCAML1	57453	broad.mit.edu	37	chr11	117395626	117395626	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcgctgatggtcagcccTgtgatgcgcttggtccagcg	14	11	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117395626	C	C	117395626	2	2	25	1	0	0	0	0	0	0	0	1	4809	1567	55	5		5	DSCAML1	11	117395626	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	5454112	117395626	17610890	369	41778											
GRIK4	2900	broad.mit.edu	37	chr11	120702467	120702467	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaccccccgaccccacttCcagcccacatctccgtgcct	5	23	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120702467	A	A	120702467	1	1	25	0	1	0	0	0	0	0	0	0	6842	870	30	3		3	GRIK4	11	120702467	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3306841	120702467	14304049	370	41779											
TECTA	7007	broad.mit.edu	37	chr11	120998454	120998454	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggctctcttcctttccccGcgtcagtgtccacagtgcag	9	16	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120998454	A	A	120998454	1	1	25	0	1	0	0	0	0	0	0	0	15869	1102	38	4		4	TECTA	11	120998454	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	295987	120998454	14008062	371	41780											
OR8D1	283159	broad.mit.edu	37	chr11	124180365	124180365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccacaaagaaaaagagctGgaccatgcactcagagtaaa	9	9	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124180365	T	T	124180365	3	4	25	1	0	0	0	0	1	0	0	0	11325	1357	47	2	631	2	OR8D1	11	124180365	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3181911	124180365	10826151	372	41781											
PRDM10	56980	broad.mit.edu	37	chr11	129801996	129801996	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcccgtccccccgtaCctgtgtcccatcgtcactct	5	21	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129801996	A	A	129801996	5	1	25	1	0	0	0	0	0	0	1	0	12557	521	18	3	2246	3	PRDM10	11	129801996	Splice_Site	SNP	C	TCGA-05-4430-01A-02D-1265-08	5621631	129801996	5204520	373	41782											
SLC6A12	6539	broad.mit.edu	37	chr12	313937	313937	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatcctttcagaccctccTcccccaacaaacccgccctc	2	23	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	313937	C	C	313937	1	2	25	0	1	0	0	0	0	0	0	0	14789	1566	54	5		5	SLC6A12	12	313937	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08		313937	133537958	374	41783											
ERC1	23085	broad.mit.edu	37	chr12	1299084	1299084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtgaccgaatacagcaCttggagagagagatcaccag	12	8	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1299084	A	A	1299084	3	1	25	1	0	0	0	0	1	0	0	0	5252	564	20	3	2259	3	ERC1	12	1299084	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	985147	1299084	132552811	375	41784											
ANO2	57101	broad.mit.edu	37	chr12	5687595	5687595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaacttctttgcatcgaGccgcacttcaatgacgttgt	7	11	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5687595	T	T	5687595	3	4	25	1	0	0	0	0	1	0	0	0	697	971	34	3	693	3	ANO2	12	5687595	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4388511	5687595	128164300	376	41785											
NOP2	4839	broad.mit.edu	37	chr12	6670020	6670020	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggcaatatttactagggtCgagtctaaacattgaggtca	11	6	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6670020	T	T	6670020	1	4	25	0	1	0	0	0	0	0	0	0	10633	899	31	4		4	NOP2	12	6670020	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	982425	6670020	127181875	377	41786											
CLEC1B	51266	broad.mit.edu	37	chr12	10147896	10147896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatccctccacagctcttGgtatgatagacaaagcttca	7	11	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10147896	T	T	10147896	1	4	25	0	1	0	0	0	0	0	0	0	3538	1363	47	2		2	CLEC1B	12	10147896	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3477876	10147896	123703999	378	41787											
GSG1	83445	broad.mit.edu	37	chr12	13256230	13256230	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctatgaaaactgggctgagTgacacattttcattccattt	7	8	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13256230	C	C	13256230	1	2	25	0	1	0	0	0	0	0	0	0	6886	1711	59	5		5	GSG1	12	13256230	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	3108334	13256230	120595665	379	41788											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	25	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	12142055	25398285	108453610	380	41789											
TMTC1	83857	broad.mit.edu	37	chr12	29911688	29911688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacacgctaacacgtccGctctgccaacgatcccagcc	8	18	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29911688	T	T	29911688	3	4	25	1	0	0	0	0	1	0	0	0	16383	1087	38	3	2209	3	TMTC1	12	29911688	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4513403	29911688	103940207	381	41790											
PKP2	5318	broad.mit.edu	37	chr12	33021797	33021797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattattggtttcagtgtgCaaagtcaccataatagaagt	8	5	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33021797	A	A	33021797	1	1	25	0	1	0	0	0	0	0	0	0	12080	725	25	3		3	PKP2	12	33021797	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3110109	33021797	100830098	382	41791											
PPHLN1	51535	broad.mit.edu	37	chr12	42825924	42825924	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catcttcctcctgggcatctCctgctgtcacgctgatgtcg	9	15	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42825924	G	G	42825924	1	3	25	0	1	0	0	0	0	0	0	0	12411	870	30	4		4	PPHLN1	12	42825924	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	9804127	42825924	91025971	383	41792											
NELL2	4753	broad.mit.edu	37	chr12	45269392	45269392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccccctcagccctccgacCctggactaggggcgtgatcc	10	18	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45269392	A	A	45269392	1	1	25	0	1	0	0	0	0	0	0	0	10429	638	22	2		2	NELL2	12	45269392	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2443468	45269392	88582503	384	41793											
MLL2	8085	broad.mit.edu	37	chr12	49435239	49435239	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctggctgcgggggaatgCggagatgtagggccggtcgg	20	10	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49435239	T	T	49435239	3	4	25	1	0	0	0	0	1	0	0	0	9714	768	27	4	10395	4	MLL2	12	49435239	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4165847	49435239	84416656	385	41794											
DIP2B	57609	broad.mit.edu	37	chr12	51115032	51115032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttctgagctttgacccGcttatcctttctgttgttta	6	11	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51115032	T	T	51115032	1	4	25	0	1	0	0	0	0	0	0	0	4568	1102	38	3		3	DIP2B	12	51115032	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1679793	51115032	82736863	386	41795											
SCN8A	6334	broad.mit.edu	37	chr12	52168315	52168315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatcttcatattaggaagGggaactctgaagtccctgca	11	8	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52168315	T	T	52168315	1	4	25	0	1	0	0	0	0	0	0	0	14037	1247	43	2		2	SCN8A	12	52168315	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1053283	52168315	81683580	387	41796											
KRT7	3855	broad.mit.edu	37	chr12	52639362	52639362	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcatgagcgtgaagctggCcctggacatcgagatcgcca	12	12	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52639362	T	T	52639362	3	4	25	1	0	0	0	0	1	0	0	0	8554	739	26	4	1177	4	KRT7	12	52639362	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	471047	52639362	81212533	388	41797											
KRT86	3892	broad.mit.edu	37	chr12	52647159	52647159	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttatgaggctcagggtggGacctcccatccattcaggac	12	12	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52647159	C	C	52647159	1	2	25	0	1	0	0	0	0	0	0	0	8571	1189	41	4		4	KRT86	12	52647159	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	7797	52647159	81204736	389	41798											
KRT2	3849	broad.mit.edu	37	chr12	53042921	53042921	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggcctctggtgtatggttCcctgtacaggcctcttcctc	11	13	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53042921	A	A	53042921	1	1	25	0	1	0	0	0	0	0	0	0	8528	870	30	3		3	KRT2	12	53042921	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	395762	53042921	80808974	390	41799											
KRT76	51350	broad.mit.edu	37	chr12	53170635	53170635	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccaggaaagcccccaggGccaaagccaccaggaccacc	9	20	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53170635	T	T	53170635	2	4	25	1	0	0	0	0	0	0	0	1	8560	1190	42	3		3	KRT76	12	53170635	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	127714	53170635	80681260	391	41800											
PPP1R1A	5502	broad.mit.edu	37	chr12	54975870	54975870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggccccctcaggttcctctCcttgctgctgttgccccagg	10	18	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54975870	A	A	54975870	3	1	25	1	0	0	0	0	1	0	0	0	12468	855	30	3	234	3	PPP1R1A	12	54975870	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1805235	54975870	78876025	392	41801											
DNAJC14	85406	broad.mit.edu	37	chr12	56211607	56211607	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctcccacgccataccatCagctcttcccattggtcaat	5	16	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56211607	A	A	56211607	1	1	25	0	1	0	0	0	0	0	0	0	4673	841	29	3		3	DNAJC14	12	56211607	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1235737	56211607	77640288	393	41802											
RPL41	6171	broad.mit.edu	37	chr12	56510423	56510423	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaacttcgcctttctctcgGccttagcgccatttttttgg	9	12	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56510423	C	C	56510423	1	2	25	0	1	0	0	0	0	0	0	0	13707	1218	42	4		4	RPL41	12	56510423	5'UTR	SNP	G	TCGA-05-4430-01A-02D-1265-08	298816	56510423	77341472	394	41803											
SLC39A5	283375	broad.mit.edu	37	chr12	56629470	56629470	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggggcttttgcggcacCgagggctcaggccagtgagt	17	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56629470	T	T	56629470	4	4	25	1	0	0	0	0	0	1	0	0	14735	644	23	4	949	4	SLC39A5	12	56629470	Nonsense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	119047	56629470	77222425	395	41804											
NAV3	89795	broad.mit.edu	37	chr12	78520992	78520992	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaaaaagggactaaggtaTatattcctctcagcacaatt	6	10	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78520992	A	A	78520992	1	1	25	0	1	0	0	0	0	0	0	0	10279	1421	49	5		5	NAV3	12	78520992	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	21891522	78520992	55330903	396	41805											
TMTC2	160335	broad.mit.edu	37	chr12	83358817	83358817	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcagagggctacttctccAggagaacagcaggtttgcag	13	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83358817	T	T	83358817	3	4	25	1	0	0	0	0	1	0	0	0	16384	188	7	5	1631	5	TMTC2	12	83358817	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	4837825	83358817	50493078	397	41806											
ALX1	8092	broad.mit.edu	37	chr12	85695135	85695135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgactctcttcttactgGggcaaccaatggacatgcat	8	12	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85695135	T	T	85695135	3	4	25	1	0	0	0	0	1	0	0	0	556	1232	43	2	877	2	ALX1	12	85695135	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2336318	85695135	48156760	398	41807											
STAB2	55576	broad.mit.edu	37	chr12	104144339	104144339	+	Intron	DEL	C	-	-													aaggaactttttcatctcttCccactctccctccacagggc							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104144339	-	-	104144339	6	5	25	0	1	1	0	1	0	0	0	0	15356	870	30	0		0	STAB2	12	104144339	Intron	DEL	C	TCGA-05-4430-01A-02D-1265-08	18449204	104144339	29707556	399	41808											
TCHP	84260	broad.mit.edu	37	chr12	110348913	110348913	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcctcgagaaggaggacGagagccagcgcctccacctg	12	16	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110348913	T	T	110348913	4	4	25	1	0	0	0	0	0	1	0	0	15824	1059	37	3	955	3	TCHP	12	110348913	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	6204574	110348913	23502982	400	41809											
FBXW8	26259	broad.mit.edu	37	chr12	117365819	117365819	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttctttctttttttttTcccctcagaatgaaatgaat	3	8	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117365819	C	C	117365819	1	2	25	0	1	0	0	0	0	0	0	0	5827	1798	62	5		5	FBXW8	12	117365819	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	7016906	117365819	16486076	401	41810											
P2RX7	5027	broad.mit.edu	37	chr12	121600296	121600296	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtctctgcctggtgccCcatcgaggcagtggaagagg	15	10	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121600296	G	G	121600296	3	3	25	1	0	0	0	0	1	0	0	0	11439	623	22	4	524	4	P2RX7	12	121600296	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4234477	121600296	12251599	402	41811											
TMEM132B	114795	broad.mit.edu	37	chr12	126137173	126137173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgttcttcagtccccaCagcaggtgagcgttccaggg	13	11	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126137173	A	A	126137173	3	1	25	1	0	0	0	0	1	0	0	0	16169	479	17	3	2116	3	TMEM132B	12	126137173	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	4536877	126137173	7714722	403	41812											
RIMBP2	23504	broad.mit.edu	37	chr12	130912844	130912844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggtcagacccccggctGctctctgtgtggtactcgtc	13	13	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130912844	T	T	130912844	3	4	25	1	0	0	0	0	1	0	0	0	13472	1310	46	3	949	3	RIMBP2	12	130912844	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4775671	130912844	2939051	404	41813											
FLT3	2322	broad.mit.edu	37	chr13	28589815	28589815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacaggctttcgggggcCatccattttacaggcagacg	11	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28589815	A	A	28589815	3	1	25	1	0	0	0	0	1	0	0	0	6000	594	21	2	432	2	FLT3	13	28589815	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08		28589815	86580063	405	41814											
EPSTI1	94240	broad.mit.edu	37	chr13	43474415	43474416	+	Intron	INS	-	A	A													tctaggtaattgatttaaccINSaaggatgcttattttattag							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43474416	A	A	43474415	6	5	25	0	1	1	1	0	0	0	0	0	5240	609	21	0		0	EPSTI1	13	43474415	Intron	INS	-	TCGA-05-4430-01A-02D-1265-08	14884600	43474415	71695463	406	41815											
HTR2A	3356	broad.mit.edu	37	chr13	47408949	47408949	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctcagtgtgccttccaCagttgccacggcaactagcc	9	15	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47408949	A	A	47408949	1	1	25	0	1	0	0	0	0	0	0	0	7511	493	17	3		3	HTR2A	13	47408949	3'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	3934534	47408949	67760929	407	41816											
RBM26	64062	broad.mit.edu	37	chr13	79943174	79943174	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actacactgtattaaaaaaaAaaaagtcccagatctaagaa	4	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79943174	T	T	79943174	1	4	25	0	1	0	0	0	0	0	0	0	13234	29	1	5		5	RBM26	13	79943174	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	32534225	79943174	35226704	408	41817											
POTEG	404785	broad.mit.edu	37	chr14	19553724	19553724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatgggcaagtggtgctGccactgcttcccctgctgca	12	13	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19553724	T	T	19553724	3	4	25	1	0	0	0	0	1	0	0	0	12362	1319	46	3	310	3	POTEG	14	19553724	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08		19553724	87795816	409	41818											
IL25	64806	broad.mit.edu	37	chr14	23842381	23842381	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctcattagccttttcctAcaggtggttgcattcttggc	8	11	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23842381	T	T	23842381	2	4	25	1	0	0	0	0	0	0	0	1	7748	378	14	5		5	IL25	14	23842381	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	4288657	23842381	83507159	410	41819											
ARHGAP5	394	broad.mit.edu	37	chr14	32563233	32563233	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatagtcaaaatcgtattAaaattcgaaactcatttgta	5	5	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32563233	G	G	32563233	3	3	25	1	0	0	0	0	1	0	0	0	888	363	13	5	3360	5	ARHGAP5	14	32563233	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	8720852	32563233	74786307	411	41820											
SLC38A6	145389	broad.mit.edu	37	chr14	61519223	61519223	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attattccggaagacaccctGgatgaaaaataacattttaa	6	7	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61519223	C	C	61519223	1	2	25	0	1	0	0	0	0	0	0	0	14722	1363	47	4		4	SLC38A6	14	61519223	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	28955990	61519223	45830317	412	41821											
SYT16	83851	broad.mit.edu	37	chr14	62462844	62462844	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaagcaggagatatgttatCtgcttcgctggttaacataa	10	7	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62462844	A	A	62462844	3	1	25	1	0	0	0	0	1	0	0	0	15591	913	32	3	109	3	SYT16	14	62462844	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	943621	62462844	44886696	413	41822											
MOAP1	64112	broad.mit.edu	37	chr14	93649642	93649642	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaaaccaggggctgggccatCctctggcagattaagctctc	12	12	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93649642	G	G	93649642	3	3	25	1	0	0	0	0	1	0	0	0	9774	855	30	4	113	4	MOAP1	14	93649642	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	31186798	93649642	13699898	414	41823											
KIAA1409	57578	broad.mit.edu	37	chr14	94046442	94046442	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatggaccaaactccttcttCttcttttttttttgtgtgtg	6	8	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94046442	A	A	94046442	1	1	25	0	1	0	0	0	0	0	0	0	8300	928	32	3		3	KIAA1409	14	94046442	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	396800	94046442	13303098	415	41824											
ADSSL1	122622	broad.mit.edu	37	chr14	105201358	105201358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgggtttctgttccaggGgggcaacaacgccggccaca	14	13	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105201358	T	T	105201358	3	4	25	1	0	0	0	0	1	0	0	0	348	1246	43	2	525	2	ADSSL1	14	105201358	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	11154916	105201358	2148182	416	41825											
NUDT14	256281	broad.mit.edu	37	chr14	105643124	105643124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagctgcgtgggaagaagCcagactgtgctcacagccac	12	13	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105643124	A	A	105643124	1	1	25	0	1	0	0	0	0	0	0	0	10825	754	26	3		3	NUDT14	14	105643124	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	441766	105643124	1706416	417	41826											
TUBGCP5	114791	broad.mit.edu	37	chr15	22853906	22853906	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatcaccagtttcctccccAtgaaaatcaaatgctttcgt	5	13	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22853906	C	C	22853906	1	2	25	0	1	0	0	0	0	0	0	0	16895	232	8	5		5	TUBGCP5	15	22853906	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08		22853906	79677486	418	41827											
GABRB3	2562	broad.mit.edu	37	chr15	27184302	27184302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttcccatctccccaagGtgaggcaaatccaggtagca	8	14	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27184302	T	T	27184302	1	4	25	0	1	0	0	0	0	0	0	0	6228	1276	44	3		3	GABRB3	15	27184302	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	4330396	27184302	75347090	419	41828											
TRPM1	4308	broad.mit.edu	37	chr15	31360169	31360169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacttgtttcagcttggGctgcatctcaaagttctgga	10	8	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31360169	T	T	31360169	3	4	25	1	0	0	0	0	1	0	0	0	16710	1203	42	3	4567	3	TRPM1	15	31360169	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4175867	31360169	71171223	420	41829											
C15orf55	256646	broad.mit.edu	37	chr15	34640216	34640216	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatgaaacctagtgccgcCccgtctccatcccctgcact	7	18	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34640216	T	T	34640216	2	4	25	1	0	0	0	0	0	0	0	1	1816	610	22	4		4	C15orf55	15	34640216	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	3280047	34640216	67891176	421	41830											
C15orf41	84529	broad.mit.edu	37	chr15	36906047	36906047	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagaggcagataggaaGtatgaagaggtggcttgtaa	16	3	0	5			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36906047	A	A	36906047	1	1	25	0	1	0	0	0	0	0	0	0	1808	1044	36	4		4	C15orf41	15	36906047	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	2265831	36906047	65625345	422	41831											
CASC5	57082	broad.mit.edu	37	chr15	40912855	40912855	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagttttcaattatagaacaTacccgtgaaaggaaacatgc	7	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40912855	C	C	40912855	2	2	25	1	0	0	0	0	0	0	0	1	2689	1403	49	5		5	CASC5	15	40912855	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	4006808	40912855	61618537	423	41832											
MAP1A	4130	broad.mit.edu	37	chr15	43819588	43819588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgcagacatctatgagCagatgatgcttactgggctt	11	7	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43819588	A	A	43819588	3	1	25	1	0	0	0	0	1	0	0	0	9319	711	25	3	5919	3	MAP1A	15	43819588	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2906733	43819588	58711804	424	41833											
DUOX2	50506	broad.mit.edu	37	chr15	45387725	45387725	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccccaatgccccctccCaccaacactgacacctcaaa	4	20	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45387725	A	A	45387725	2	1	25	1	0	0	0	0	0	0	0	1	4841	581	21	2		2	DUOX2	15	45387725	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	1568137	45387725	57143667	425	41834											
FBN1	2200	broad.mit.edu	37	chr15	48757711	48757711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaccatattctggttttGcaggtcagttcttgatatct	8	7	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48757711	T	T	48757711	1	4	25	0	1	0	0	0	0	0	0	0	5759	1334	46	3		3	FBN1	15	48757711	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3369986	48757711	53773681	426	41835											
TRPM7	54822	broad.mit.edu	37	chr15	50955118	50955118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaataacaatataatttaCactaaaatttctagaagacc	3	6	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50955118	A	A	50955118	1	1	25	0	1	0	0	0	0	0	0	0	16716	493	17	3		3	TRPM7	15	50955118	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2197407	50955118	51576274	427	41836											
UNC13C	440279	broad.mit.edu	37	chr15	54707284	54707284	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaattataaatatttatActtattcgaatacatgttag	5	3	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54707284	G	G	54707284	1	3	25	0	1	0	0	0	0	0	0	0	17112	406	14	5		5	UNC13C	15	54707284	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	3752166	54707284	47824108	428	41837											
TCF12	6938	broad.mit.edu	37	chr15	57539173	57539173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttagaaccttctgctaCcatatccaccactttcacca	3	14	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57539173	A	A	57539173	1	1	25	0	1	0	0	0	0	0	0	0	15809	522	18	3		3	TCF12	15	57539173	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2831889	57539173	44992219	429	41838											
CYP1A1	1543	broad.mit.edu	37	chr15	75013022	75013022	+	Frame_Shift_Del	DEL	G	-	-													ttccgcttgcccatgccaaaGataatcaccttctcacttaa							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75013022	-	-	75013022	7	5	25	1	0	1	0	1	0	0	0	0	4182	932	33	0	195	0	CYP1A1	15	75013022	Frame_Shift_Del	DEL	G	TCGA-05-4430-01A-02D-1265-08	17473849	75013022	27518370	430	41839											
CPLX3	594855	broad.mit.edu	37	chr15	75119191	75119191	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtacgaggagtatcagaaGcaactcgtggaagagaagtg	15	5	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75119191	A	A	75119191	2	1	25	1	0	0	0	0	0	0	0	1	3838	962	34	4		4	CPLX3	15	75119191	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	106169	75119191	27412201	431	41840											
ULK3	25989	broad.mit.edu	37	chr15	75134424	75134424	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggcctttacctaattgcTgcatgaagacacgcgccacc	8	14	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75134424	A	A	75134424	3	1	25	1	0	0	0	0	1	0	0	0	17103	1580	55	5	1118	5	ULK3	15	75134424	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	15233	75134424	27396968	432	41841											
C15orf27	123591	broad.mit.edu	37	chr15	76463513	76463513	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtcagtggggctgctccAgaaagtggggctttcaactg	16	8	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76463513	T	T	76463513	1	4	25	0	1	0	0	0	0	0	0	0	1801	203	7	5		5	C15orf27	15	76463513	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	1329089	76463513	26067879	433	41842											
ADAMTS7	11173	broad.mit.edu	37	chr15	79082888	79082888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagccttgggccaaaggtGcgcaaactctcctcaaaatt	8	13	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79082888	T	T	79082888	1	4	25	0	1	0	0	0	0	0	0	0	271	1334	46	3		3	ADAMTS7	15	79082888	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	2619375	79082888	23448504	434	41843											
NTRK3	4916	broad.mit.edu	37	chr15	88474461	88474461	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtggctcttggggctggaGatactgctgaatgtaaggat	16	5	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88474461	A	A	88474461	1	1	25	0	1	0	0	0	0	0	0	0	10803	957	33	4		4	NTRK3	15	88474461	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	9391573	88474461	14056931	435	41844											
MESP2	145873	broad.mit.edu	37	chr15	90320536	90320536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtggaggcccttgctgtGttccccagcctccagtctgc	12	14	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90320536	T	T	90320536	1	4	25	0	1	0	0	0	0	0	0	0	9576	1392	48	3		3	MESP2	15	90320536	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1846075	90320536	12210856	436	41845											
OR4F6	390648	broad.mit.edu	37	chr15	102345883	102345883	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtttctccttactctcctCtttcagttagcatgagagtt	6	10	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102345883	A	A	102345883	1	1	25	0	1	0	0	0	0	0	0	0	11160	928	32	3		3	OR4F6	15	102345883	5'Flank	SNP	C	TCGA-05-4430-01A-02D-1265-08	12025347	102345883	185509	437	41846											
AXIN1	8312	broad.mit.edu	37	chr16	347265	347265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagtcgccctggcctccggTggccgaggctgtgccccttc	14	17	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	347265	A	A	347265	1	1	25	0	1	0	0	0	0	0	0	0	1241	1711	59	5		5	AXIN1	16	347265	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08		347265	90007488	438	41847											
ZNF597	146434	broad.mit.edu	37	chr16	3490906	3490906	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcttgagaaaaatacaCagccagatcctcaaagagta	6	11	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3490906	G	G	3490906	3	3	25	1	0	0	0	0	1	0	0	0	18154	478	17	4	1221	4	ZNF597	16	3490906	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3143641	3490906	86863847	439	41848											
GRIN2A	2903	broad.mit.edu	37	chr16	9857275	9857275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctcccaataaccaagcGttggtcatccctgtgggagt	10	12	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9857275	T	T	9857275	3	4	25	1	0	0	0	0	1	0	0	0	6845	1145	40	3	272	3	GRIN2A	16	9857275	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	6366369	9857275	80497478	440	41849											
NOMO1	23420	broad.mit.edu	37	chr16	14989555	14989555	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggccacagccaggggtcCggccactacccgcccgtggg	14	17	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14989555	A	A	14989555	1	1	25	0	1	0	0	0	0	0	0	0	10626	667	23	1		1	NOMO1	16	14989555	3'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	5132280	14989555	75365198	441	41850											
MYH11	4629	broad.mit.edu	37	chr16	15839064	15839064	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgaatcaccttcatggcGgtcagctgctgctgcctctt	9	14	5	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15839064	T	T	15839064	2	4	25	1	0	0	0	0	0	0	0	1	10125	1103	39	1		1	MYH11	16	15839064	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	849509	15839064	74515689	442	41851											
USP31	57478	broad.mit.edu	37	chr16	23080502	23080502	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccagagagcgggggcaggCggtccccttgtgctgaatgt	17	10	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23080502	T	T	23080502	3	4	25	1	0	0	0	0	1	0	0	0	17189	768	27	4	1138	4	USP31	16	23080502	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	7241438	23080502	67274251	443	41852											
ITGAX	3687	broad.mit.edu	37	chr16	31391640	31391640	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacgtcccctccttcagCgtccaggaggagctggattt	12	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31391640	G	G	31391640	3	3	25	1	0	0	0	0	1	0	0	0	7959	767	27	4	3220	4	ITGAX	16	31391640	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	8311138	31391640	58963113	444	41853											
ITGAD	3681	broad.mit.edu	37	chr16	31421615	31421615	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccgggaagacagagaagAaaagcctggatggcgagtga	18	6	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31421615	G	G	31421615	1	3	25	0	1	0	0	0	0	0	0	0	7954	261	9	5		5	ITGAD	16	31421615	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	29975	31421615	58933138	445	41854											
CBLN1	869	broad.mit.edu	37	chr16	49313499	49313499	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaccggccacccgtttAgcatgaggctcacctgagaa	9	13	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49313499	C	C	49313499	3	2	25	1	0	0	0	0	1	0	0	0	2730	420	15	5	187	5	CBLN1	16	49313499	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	17891884	49313499	41041254	446	41855											
SALL1	6299	broad.mit.edu	37	chr16	51173271	51173271	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaaaccattggcaaactcGcttgggaccgctctctgtgg	11	12	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51173271	A	A	51173271	2	1	25	1	0	0	0	0	0	0	0	1	13921	1078	38	4		4	SALL1	16	51173271	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1859772	51173271	39181482	447	41856											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53706901	53706901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatttgccatcaaagcatCgtggctgattctgagagttc	9	11	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53706901	A	A	53706901	3	1	25	1	0	0	0	0	1	0	0	0	13661	884	31	3	3117	3	RPGRIP1L	16	53706901	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2533630	53706901	36647852	448	41857											
SLC6A2	6530	broad.mit.edu	37	chr16	55728015	55728015	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttacaacaaatttgacaacAactgttacaggtaagattct	6	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55728015	T	T	55728015	3	4	25	1	0	0	0	0	1	0	0	0	14797	130	5	5	1125	5	SLC6A2	16	55728015	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	2021114	55728015	34626738	449	41858											
GNAO1	2775	broad.mit.edu	37	chr16	56377812	56377812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtttgtctttgatgctGtgacggacgtcatcatcgcc	10	11	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56377812	T	T	56377812	3	4	25	1	0	0	0	0	1	0	0	0	6572	1377	48	3	1045	3	GNAO1	16	56377812	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	649797	56377812	33976941	450	41859											
RSPRY1	89970	broad.mit.edu	37	chr16	57247101	57247101	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttgatcaaactgctataCcagaaagaaatctcttaaaa	4	8	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57247101	T	T	57247101	1	4	25	0	1	0	0	0	0	0	0	0	13824	522	18	4		4	RSPRY1	16	57247101	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	869289	57247101	33107652	451	41860											
GOT2	2806	broad.mit.edu	37	chr16	58752331	58752331	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgggaatcagctcttcCccagtattttaactcagata	6	12	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58752331	T	T	58752331	1	4	25	0	1	0	0	0	0	0	0	0	6645	638	22	4		4	GOT2	16	58752331	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1505230	58752331	31602422	452	41861											
GOT2	2806	broad.mit.edu	37	chr16	58757867	58757867	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaagatccattttacttaTttatttatgagatagactct	4	7	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58757867	C	C	58757867	1	2	25	0	1	0	0	0	0	0	0	0	6645	1508	52	5		5	GOT2	16	58757867	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	5536	58757867	31596886	453	41862											
RLTPR	146206	broad.mit.edu	37	chr16	67683455	67683455	+	Frame_Shift_Del	DEL	G	-	-													tgaccgcgctggatatcagcGgcaacgccatgggggacgcg							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67683455	-	-	67683455	7	5	25	1	0	1	0	1	0	0	0	0	13505	1116	39	0	1930	0	RLTPR	16	67683455	Frame_Shift_Del	DEL	G	TCGA-05-4430-01A-02D-1265-08	8925588	67683455	22671298	454	41863											
DPEP2	64174	broad.mit.edu	37	chr16	68036610	68036610	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaaagggctcattatctGggggtgatcacagatgaatg	13	7	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68036610	T	T	68036610	1	4	25	0	1	0	0	0	0	0	0	0	4754	1363	47	2		2	DPEP2	16	68036610	5'Flank	SNP	G	TCGA-05-4430-01A-02D-1265-08	353155	68036610	22318143	455	41864											
TMCO7	79613	broad.mit.edu	37	chr16	68894053	68894053	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaatttcaatccaggtaaaCccaaccctaggactccggaa	6	13	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68894053	T	T	68894053	3	4	25	1	0	0	0	0	1	0	0	0	16124	507	18	4	367	4	TMCO7	16	68894053	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	857443	68894053	21460700	456	41865											
HYDIN	54768	broad.mit.edu	37	chr16	71019123	71019123	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtggcactccagggagaaGgttgtctggagaagactggt	16	6	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71019123	T	T	71019123	3	4	25	1	0	0	0	0	1	0	0	0	7537	1000	35	2	11304	2	HYDIN	16	71019123	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2125070	71019123	19335630	457	41866											
CALB2	794	broad.mit.edu	37	chr16	71411470	71411470	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaacgcaattcccacactGcctcgccactggccctttcc	6	18	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71411470	C	C	71411470	1	2	25	0	1	0	0	0	0	0	0	0	2600	1334	46	4		4	CALB2	16	71411470	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	392347	71411470	18943283	458	41867											
TAT	6898	broad.mit.edu	37	chr16	71601980	71601980	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagggccacctgagtccctGaggagccgcaaggcctagtc	14	13	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71601980	A	A	71601980	1	1	25	0	1	0	0	0	0	0	0	0	15709	1305	45	4		4	TAT	16	71601980	3'UTR	SNP	G	TCGA-05-4430-01A-02D-1265-08	190510	71601980	18752773	459	41868											
CNTNAP4	85445	broad.mit.edu	37	chr16	76461392	76461392	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacagtgttgtgtactataGactccagccttctatcaaag	8	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76461392	T	T	76461392	3	4	25	1	0	0	0	0	1	0	0	0	3681	942	33	3	461	3	CNTNAP4	16	76461392	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4859412	76461392	13893361	460	41869											
ADAMTS18	170692	broad.mit.edu	37	chr16	77317955	77317955	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagttgaagaaatctacGcaggatggatcctctaaaat	8	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77317955	T	T	77317955	4	4	25	1	0	0	0	0	0	1	0	0	263	1079	38	3	105	3	ADAMTS18	16	77317955	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	856563	77317955	13036798	461	41870											
CDYL2	124359	broad.mit.edu	37	chr16	80718411	80718411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccatggccagagccaaacCcaagagaaagaaaagctaca	9	12	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80718411	A	A	80718411	1	1	25	0	1	0	0	0	0	0	0	0	3216	638	22	2		2	CDYL2	16	80718411	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3400456	80718411	9636342	462	41871											
ATP2C2	9914	broad.mit.edu	37	chr16	84487160	84487160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggaggggaggaggttgaGcaggggcgcgtgggcagctc	25	6	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84487160	T	T	84487160	1	4	25	0	1	0	0	0	0	0	0	0	1148	986	34	3		3	ATP2C2	16	84487160	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3768749	84487160	5867593	463	41872											
COTL1	23406	broad.mit.edu	37	chr16	84623755	84623755	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtccgtcccggttttggCgcgctgcagcccgctgacgt	13	15	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84623755	T	T	84623755	3	4	25	1	0	0	0	0	1	0	0	0	3793	768	27	4	162	4	COTL1	16	84623755	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	136595	84623755	5730998	464	41873											
SPG7	6687	broad.mit.edu	37	chr16	89598377	89598377	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgctgctcggccccccCggctgtgggaagacgctgct	14	16	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89598377	A	A	89598377	2	1	25	1	0	0	0	0	0	0	0	1	15162	639	23	1		1	SPG7	16	89598377	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	4974622	89598377	756376	465	41874											
FANCA	2175	broad.mit.edu	37	chr16	89849524	89849524	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcacctgaggatagataGcagagcgcagcaccgttagt	13	9	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89849524	A	A	89849524	1	1	25	0	1	0	0	0	0	0	0	0	5719	986	34	4		4	FANCA	16	89849524	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	251147	89849524	505229	466	41875											
FANCA	2175	broad.mit.edu	37	chr16	89858586	89858586	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagccccctcacttcccacTgcaaaggtaacacatggagc	8	16	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89858586	A	A	89858586	1	1	25	0	1	0	0	0	0	0	0	0	5719	1595	55	5		5	FANCA	16	89858586	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	9062	89858586	496167	467	41876											
CENPBD1	92806	broad.mit.edu	37	chr16	90038268	90038268	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aatttgaggtcaagggtaatCgctttccgttcccttttggc	10	9	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90038268	G	G	90038268	2	3	25	1	0	0	0	0	0	0	0	1	3258	871	31	4		4	CENPBD1	16	90038268	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	179682	90038268	316485	468	41877											
SMYD4	114826	broad.mit.edu	37	chr17	1690044	1690044	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttcctcctaaacactgatCacccttggggtggaaaactg	9	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1690044	T	T	1690044	1	4	25	0	1	0	0	0	0	0	0	0	14938	841	29	4		4	SMYD4	17	1690044	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08		1690044	79505166	469	41878											
CHRNE	1145	broad.mit.edu	37	chr17	4804399	4804399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgatgagcgagtagatgaCgtcagtctcccctgggccgt	14	10	2	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4804399	A	A	4804399	3	1	25	1	0	0	0	0	1	0	0	0	3426	536	19	3	817	3	CHRNE	17	4804399	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3114355	4804399	76390811	470	41879											
USP6	9098	broad.mit.edu	37	chr17	5033581	5033581	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttatacaaccagccagcatCtgggagcccggtgggagcgg	15	11	1	0	rs146852001	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5033581	G	G	5033581	1	3	25	0	1	0	0	0	0	0	0	0	17213	928	32	4		4	USP6	17	5033581	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	229182	5033581	76161629	471	41880											
TP53	7157	broad.mit.edu	37	chr17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatggtgaggatgggcCtccggttcatgccgcccatg	15	10	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577535	A	A	7577535	3	1	25	1	0	0	0	0	1	0	0	0	16505	681	24	2	544	2	TP53	17	7577535	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2543954	7577535	73617675	472	41881											
RCVRN	5957	broad.mit.edu	37	chr17	9808086	9808086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggagcgaccccggcaccGcccagccagaaggggagagg	16	16	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9808086	T	T	9808086	1	4	25	0	1	0	0	0	0	0	0	0	13294	1102	38	3		3	RCVRN	17	9808086	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	2230551	9808086	71387124	473	41882											
MYH8	4626	broad.mit.edu	37	chr17	10298575	10298575	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcttgactctcagagcatCatttctgcttctaatctctg	5	12	6	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10298575	G	G	10298575	3	3	25	1	0	0	0	0	1	0	0	0	10135	826	29	4	1004	4	MYH8	17	10298575	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	490489	10298575	70896635	474	41883											
MYH8	4626	broad.mit.edu	37	chr17	10301785	10301785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctccagctcctctgtgCgctggatggcatccgtctcg	10	17	2	0	rs147143044		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10301785	A	A	10301785	3	1	25	1	0	0	0	0	1	0	0	0	10135	768	27	3	1703	3	MYH8	17	10301785	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3210	10301785	70893425	475	41884											
DNAH9	1770	broad.mit.edu	37	chr17	11757701	11757701	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaagccaccgcggacctcAcagctgcccaggagaagctg	11	15	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11757701	T	T	11757701	3	4	25	1	0	0	0	0	1	0	0	0	4648	159	6	5	10087	5	DNAH9	17	11757701	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	1455916	11757701	69437509	476	41885											
MAPK7	5598	broad.mit.edu	37	chr17	19285382	19285382	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcacctctgtgccggcccCtgccccagcgccaacgccaa	8	22	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19285382	G	G	19285382	3	3	25	1	0	0	0	0	1	0	0	0	9374	681	24	4	1780	4	MAPK7	17	19285382	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	7527681	19285382	61909828	477	41886											
RPL23A	6147	broad.mit.edu	37	chr17	27050936	27050936	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattctgaatatatatataTatatatcttttcaccatata	1	5	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27050936	C	C	27050936	1	2	25	0	1	0	0	0	0	0	0	0	13682	1421	49	5		5	RPL23A	17	27050936	3'UTR	SNP	T	TCGA-05-4430-01A-02D-1265-08	7765554	27050936	54144274	478	41887											
CPD	1362	broad.mit.edu	37	chr17	28754530	28754530	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaactattgctgtaatgagCtggatgaagtcctatccatt	9	7	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28754530	T	T	28754530	2	4	25	1	0	0	0	0	0	0	0	1	3830	796	28	4		4	CPD	17	28754530	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	1703594	28754530	52440680	479	41888											
MYO1D	4642	broad.mit.edu	37	chr17	31075963	31075963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatactcacactacatcgCctgcataatgtcgaattcga	6	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31075963	A	A	31075963	3	1	25	1	0	0	0	0	1	0	0	0	10165	739	26	3	1535	3	MYO1D	17	31075963	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2321433	31075963	50119247	480	41889											
MYO1D	4642	broad.mit.edu	37	chr17	31075976	31075976	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacatcgcctgcataatgtcGaattcgaaaatctcgatcaa	6	10	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31075976	A	A	31075976	4	1	25	1	0	0	0	0	0	1	0	0	10165	1066	37	4	1548	4	MYO1D	17	31075976	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	13	31075976	50119234	481	41890											
SLFN12L	342615	broad.mit.edu	37	chr17	33806774	33806774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagcattcatgacttttGcagacgttacatctctcttg	7	10	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33806774	T	T	33806774	3	4	25	1	0	0	0	0	1	0	0	0	14849	1319	46	3	1323	3	SLFN12L	17	33806774	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2730798	33806774	47388436	482	41891											
AP2B1	163	broad.mit.edu	37	chr17	33933052	33933052	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttagtggggcttggtgcaTccttgccagatgggtagaag	16	6	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33933052	C	C	33933052	1	2	25	0	1	0	0	0	0	0	0	0	743	1450	50	5		5	AP2B1	17	33933052	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	126278	33933052	47262158	483	41892											
GSDMA	284110	broad.mit.edu	37	chr17	38128807	38128807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggcaaaaatgggttttGtgctgacagatgtgcatttt	11	4	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38128807	T	T	38128807	1	4	25	0	1	0	0	0	0	0	0	0	6882	1392	48	3		3	GSDMA	17	38128807	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	4195755	38128807	43066403	484	41893											
CDC6	990	broad.mit.edu	37	chr17	38447622	38447622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatggcaactgttagtgcaGccattgtaaccaaggctgat	10	9	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38447622	A	A	38447622	1	1	25	0	1	0	0	0	0	0	0	0	3113	986	34	4		4	CDC6	17	38447622	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	318815	38447622	42747588	485	41894											
CNTNAP1	8506	broad.mit.edu	37	chr17	40845266	40845266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattacaggcgtgagccacCgcgcctggccctgcctccat	12	16	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40845266	A	A	40845266	1	1	25	0	1	0	0	0	0	0	0	0	3678	667	23	1		1	CNTNAP1	17	40845266	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2397644	40845266	40349944	486	41895											
VPS25	84313	broad.mit.edu	37	chr17	40926774	40926774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttgggttttcctgagggCaaattaggataagtcttttt	11	4	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40926774	A	A	40926774	1	1	25	0	1	0	0	0	0	0	0	0	17323	725	25	3		3	VPS25	17	40926774	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	81508	40926774	40268436	487	41896											
CNTD1	124817	broad.mit.edu	37	chr17	40958759	40958759	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgacactgctcgacctggtCtatcttctgcatgaacccat	7	14	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40958759	T	T	40958759	2	4	25	1	0	0	0	0	0	0	0	1	3667	900	32	4		4	CNTD1	17	40958759	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	31985	40958759	40236451	488	41897											
ARL4D	379	broad.mit.edu	37	chr17	41477386	41477386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatacccgccggacagacGgtctagtgtttgtggtggac	13	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41477386	T	T	41477386	3	4	25	1	0	0	0	0	1	0	0	0	942	1116	39	1	288	1	ARL4D	17	41477386	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	518627	41477386	39717824	489	41898											
C17orf46	124783	broad.mit.edu	37	chr17	43332762	43332762	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggagctttcatcatgtGttccaaactgggcaggtcca	13	9	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43332762	A	A	43332762	3	1	25	1	0	0	0	0	1	0	0	0	1873	1377	48	4	375	4	C17orf46	17	43332762	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1855376	43332762	37862448	490	41899											
NXPH3	11248	broad.mit.edu	37	chr17	47656499	47656499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgacccagccaagatctGctcccgagaccacgctcaga	8	18	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47656499	T	T	47656499	3	4	25	1	0	0	0	0	1	0	0	0	10887	1319	46	3	602	3	NXPH3	17	47656499	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4323737	47656499	33538711	491	41900											
LRRC59	55379	broad.mit.edu	37	chr17	48462617	48462617	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccgctcctgagcttcctTagctcgctgcttagcctcac	7	17	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48462617	C	C	48462617	3	2	25	1	0	0	0	0	1	0	0	0	9102	1763	61	5	393	5	LRRC59	17	48462617	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	806118	48462617	32732593	492	41901											
CA10	56934	broad.mit.edu	37	chr17	49710858	49710858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatactgaagcttctgggCtcggttgtttggacagtcct	11	9	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49710858	A	A	49710858	3	1	25	1	0	0	0	0	1	0	0	0	2537	797	28	3	51	3	CA10	17	49710858	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1248241	49710858	31484352	493	41902											
TANC2	26115	broad.mit.edu	37	chr17	61498459	61498459	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgaccttcctcagcatacCgaggtggcgtgagatacagc	12	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61498459	T	T	61498459	4	4	25	1	0	0	0	0	0	1	0	0	15664	644	23	4	5214	4	TANC2	17	61498459	Nonsense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	11787601	61498459	19696751	494	41903											
ABCA9	10350	broad.mit.edu	37	chr17	66986013	66986013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttccttttagaaaagCaatttttctttttgcctgca	4	8	2	1	rs149991432		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66986013	A	A	66986013	3	1	25	1	0	0	0	0	1	0	0	0	39	710	25	3	1018	3	ABCA9	17	66986013	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	5487554	66986013	14209197	495	41904											
ABCA9	10350	broad.mit.edu	37	chr17	67020288	67020288	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattaaaactagccatcattCttatcaccactgttattgtt	3	10	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67020288	A	A	67020288	1	1	25	0	1	0	0	0	0	0	0	0	39	928	32	3		3	ABCA9	17	67020288	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	34275	67020288	14174922	496	41905											
ABCA5	23461	broad.mit.edu	37	chr17	67243691	67243691	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaaattcaaaatactactCtatcttcttgtgttcgttcc	3	10	4	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67243691	T	T	67243691	3	4	25	1	0	0	0	0	1	0	0	0	35	913	32	4	16	4	ABCA5	17	67243691	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	223403	67243691	13951519	497	41906											
ABCA5	23461	broad.mit.edu	37	chr17	67309240	67309240	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctcacaataccatcaggTagatgatcagtagacacttt	7	9	3	3	rs146635038		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67309240	C	C	67309240	2	2	25	1	0	0	0	0	0	0	0	1	35	1625	57	5		5	ABCA5	17	67309240	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	65549	67309240	13885970	498	41907											
CD300LB	124599	broad.mit.edu	37	chr17	72519042	72519042	+	Intron	DEL	G	-	-													aggagcatgtagtggttcctGgggaaggggatgcagtggtc							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72519042	-	-	72519042	6	5	25	0	1	1	0	1	0	0	0	0	3029	1363	47	0		0	CD300LB	17	72519042	Intron	DEL	G	TCGA-05-4430-01A-02D-1265-08	5209802	72519042	8676168	499	41908											
C1QTNF1	114897	broad.mit.edu	37	chr17	77042521	77042521	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaacacagagccttgtgggtCcaggtgagagagtgagaagg	17	6	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77042521	A	A	77042521	1	1	25	0	1	0	0	0	0	0	0	0	1982	870	30	3		3	C1QTNF1	17	77042521	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	4523479	77042521	4152689	500	41909											
P4HB	5034	broad.mit.edu	37	chr17	79813036	79813036	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcttaaagaggacaacCccatctttgtcgagctggta	8	11	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79813036	A	A	79813036	2	1	25	1	0	0	0	0	0	0	0	1	11453	610	22	2		2	P4HB	17	79813036	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	2770515	79813036	1382174	501	41910											
PTPRM	5797	broad.mit.edu	37	chr18	8113797	8113797	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttacttaggctatttgggGttgttaatgtgaacatagat	11	3	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8113797	C	C	8113797	1	2	25	0	1	0	0	0	0	0	0	0	12914	1276	44	4		4	PTPRM	18	8113797	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08		8113797	69963451	502	41911											
FAM38B	63895	broad.mit.edu	37	chr18	10680359	10680359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataattttccagaaattGcatagcaccctgtatgtgca	6	9	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10680359	T	T	10680359	3	4	25	1	0	0	0	0	1	0	0	0	5606	1328	46	3	828	3	FAM38B	18	10680359	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2566562	10680359	67396889	503	41912											
CIDEA	1149	broad.mit.edu	37	chr18	12264486	12264486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcacccaaacagctactGggtagactttttacctacaa	6	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12264486	T	T	12264486	1	4	25	0	1	0	0	0	0	0	0	0	3456	1363	47	2		2	CIDEA	18	12264486	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1584127	12264486	65812762	504	41913											
CEP192	55125	broad.mit.edu	37	chr18	13095519	13095519	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcgacttgggagcttctgGgaaacatggtggcaacgtct	14	8	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13095519	T	T	13095519	3	4	25	1	0	0	0	0	1	0	0	0	3281	1232	43	2	6406	2	CEP192	18	13095519	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	831033	13095519	64981729	505	41914											
PSMA8	143471	broad.mit.edu	37	chr18	23751282	23751282	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggacctccgagcccgctcGttacagcagaacgcgcggtc	13	15	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23751282	A	A	23751282	1	1	25	0	1	0	0	0	0	0	0	0	12779	1160	40	4		4	PSMA8	18	23751282	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	10655763	23751282	54325966	506	41915											
TAF4B	6875	broad.mit.edu	37	chr18	23895129	23895129	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctctctctctctctcacAcacacacacacacacacaca	1	19	4	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23895129	T	T	23895129	1	4	25	0	1	0	0	0	0	0	0	0	15646	174	6	5		5	TAF4B	18	23895129	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	143847	23895129	54182119	507	41916											
DSG3	1830	broad.mit.edu	37	chr18	29054280	29054280	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagggcagtctggaaccatGagaacaaggcattccactgg	12	10	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29054280	T	T	29054280	3	4	25	1	0	0	0	0	1	0	0	0	4818	1290	45	3	2356	3	DSG3	18	29054280	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	5159151	29054280	49022968	508	41917											
RIT2	6014	broad.mit.edu	37	chr18	40613901	40613901	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caataagttatttaccaacaTagtccaccaatcttttaaaa	2	9	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40613901	A	A	40613901	1	1	25	0	1	0	0	0	0	0	0	0	13498	1421	49	5		5	RIT2	18	40613901	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	11559621	40613901	37463347	509	41918											
DYM	54808	broad.mit.edu	37	chr18	46783444	46783444	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccgacatatttgctaaagCtgccaaacaatttgtgtgaa	8	8	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46783444	T	T	46783444	3	4	25	1	0	0	0	0	1	0	0	0	4880	797	28	4	633	4	DYM	18	46783444	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	6169543	46783444	31293804	510	41919											
MRO	83876	broad.mit.edu	37	chr18	48325705	48325705	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatttccctgctgctctgcGcttacagaattttatttgcg	7	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48325705	A	A	48325705	1	1	25	0	1	0	0	0	0	0	0	0	9866	1102	38	4		4	MRO	18	48325705	3'UTR	SNP	G	TCGA-05-4430-01A-02D-1265-08	1542261	48325705	29751543	511	41920											
TCF4	6925	broad.mit.edu	37	chr18	52896360	52896360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtggggaaaaagaaggTgtctacattactttgttttc	12	4	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52896360	A	A	52896360	1	1	25	0	1	0	0	0	0	0	0	0	15817	1711	59	5		5	TCF4	18	52896360	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	4570655	52896360	25180888	512	41921											
ALPK2	115701	broad.mit.edu	37	chr18	56202933	56202933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccgccttcgctgggttGcaggacttgccaaatggcag	12	12	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56202933	T	T	56202933	3	4	25	1	0	0	0	0	1	0	0	0	545	1328	46	3	2062	3	ALPK2	18	56202933	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3306573	56202933	21874315	513	41922											
ZCCHC2	54877	broad.mit.edu	37	chr18	60243765	60243765	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacttacagactgagatacGcacctcccctccccccttct	5	19	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60243765	C	C	60243765	3	2	25	1	0	0	0	0	1	0	0	0	17713	1087	38	4	3544	4	ZCCHC2	18	60243765	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4040832	60243765	17833483	514	41923											
RTTN	25914	broad.mit.edu	37	chr18	67860783	67860783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcttccaaaaacattaacAaattaagatagtaggaatcc	4	7	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67860783	G	G	67860783	1	3	25	0	1	0	0	0	0	0	0	0	13848	145	5	5		5	RTTN	18	67860783	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	7617018	67860783	10216465	515	41924											
TSHZ1	10194	broad.mit.edu	37	chr18	72998565	72998565	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctatggctaccagaatggCgccagctacacctggcagtt	11	13	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72998565	G	G	72998565	2	3	25	1	0	0	0	0	0	0	0	1	16748	755	27	4		4	TSHZ1	18	72998565	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	5137782	72998565	5078683	516	41925											
MIER2	54531	broad.mit.edu	37	chr19	313534	313534	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccctctgggagctgaggCccggccatctcgtgccaacg	12	16	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	313534	G	G	313534	2	3	25	1	0	0	0	0	0	0	0	1	9674	726	26	4		4	MIER2	19	313534	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08		313534	58815449	517	41926											
TIMM13	26517	broad.mit.edu	37	chr19	2427391	2427391	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtcgcccccagcgccCgtccccggccagccccgcac	10	25	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2427391	G	G	2427391	1	3	25	0	1	0	0	0	0	0	0	0	16029	667	23	4		4	TIMM13	19	2427391	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2113857	2427391	56701592	518	41927											
ZNF555	148254	broad.mit.edu	37	chr19	2850498	2850498	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtcagggaatcacagaatCttgtttgaactacatacgaa	8	7	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2850498	G	G	2850498	1	3	25	0	1	0	0	0	0	0	0	0	18113	928	32	4		4	ZNF555	19	2850498	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	423107	2850498	56278485	519	41928											
TLE6	79816	broad.mit.edu	37	chr19	2989238	2989238	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtgttcacctgtggcagaaGaggcatcaaggtgtggagcc	15	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2989238	T	T	2989238	3	4	25	1	0	0	0	0	1	0	0	0	16065	942	33	3	962	3	TLE6	19	2989238	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	138740	2989238	56139745	520	41929											
AES	166	broad.mit.edu	37	chr19	3057654	3057654	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcccgcccccaacactggAcctgggggcggagtgacgtt	14	15	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3057654	G	G	3057654	1	3	25	0	1	0	0	0	0	0	0	0	352	290	10	5		5	AES	19	3057654	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	68416	3057654	56071329	521	41930											
XAB2	56949	broad.mit.edu	37	chr19	7684528	7684528	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgctctgctgctccagccGaacctctgtggggaaggcgg	14	14	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7684528	T	T	7684528	2	4	25	1	0	0	0	0	0	0	0	1	17545	1057	37	3		3	XAB2	19	7684528	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	4626874	7684528	51444455	522	41931											
MUC16	94025	broad.mit.edu	37	chr19	9064438	9064438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggccatgacacacctccagGacctctgcccatggaagtgg	11	14	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9064438	T	T	9064438	3	4	25	1	0	0	0	0	1	0	0	0	10067	1174	41	3	20843	3	MUC16	19	9064438	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1379910	9064438	50064545	523	41932											
MUC16	94025	broad.mit.edu	37	chr19	9073402	9073402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccagaagaccctgtctGggtggtggtcatgtgggtag	16	8	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9073402	T	T	9073402	3	4	25	1	0	0	0	0	1	0	0	0	10067	1357	47	2	29807	2	MUC16	19	9073402	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	8964	9073402	50055581	524	41933											
TRMT1	55621	broad.mit.edu	37	chr19	13223573	13223573	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccgtacttgctgtagcaCgtctccccgctgttccccgc	9	19	1	0	rs147062421	byFrequency	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13223573	A	A	13223573	2	1	25	1	0	0	0	0	0	0	0	1	16686	523	19	3		3	TRMT1	19	13223573	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	4150171	13223573	45905410	525	41934											
SLC1A6	6511	broad.mit.edu	37	chr19	15075052	15075052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccttcctcccgcctcttGcccttggaccatcccttcag	7	20	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15075052	T	T	15075052	1	4	25	0	1	0	0	0	0	0	0	0	14549	1334	46	3		3	SLC1A6	19	15075052	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1851479	15075052	44053931	526	41935											
SLC27A1	376497	broad.mit.edu	37	chr19	17599848	17599848	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcgtggggcagtgtctcatCtatgggctgacagtcgtcct	15	10	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17599848	T	T	17599848	2	4	25	1	0	0	0	0	0	0	0	1	14639	903	32	4		4	SLC27A1	19	17599848	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	2524796	17599848	41529135	527	41936											
ZNF492	57615	broad.mit.edu	37	chr19	22847799	22847799	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctaaacataaggtaattcAtactggagagaagccctaca	7	8	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22847799	G	G	22847799	3	3	25	1	0	0	0	0	1	0	0	0	18070	217	8	5	1338	5	ZNF492	19	22847799	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	5247951	22847799	36281184	528	41937											
TSHZ3	57616	broad.mit.edu	37	chr19	31768256	31768256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggatgaggaggttgccgGggctgtggacgtgggtgaca	21	6	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768256	T	T	31768256	3	4	25	1	0	0	0	0	1	0	0	0	16750	1232	43	2	806	2	TSHZ3	19	31768256	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	8920457	31768256	27360727	529	41938											
GPI	2821	broad.mit.edu	37	chr19	34859562	34859562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagacggcaaggatgtgatGccagaggtcaacaaggttct	14	7	2	3	rs11548996		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34859562	T	T	34859562	3	4	25	1	0	0	0	0	1	0	0	0	6676	1319	46	3	492	3	GPI	19	34859562	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3091306	34859562	24269421	530	41939											
CYP2A13	1553	broad.mit.edu	37	chr19	41597865	41597865	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagccagggagagggaaatCaggatgggagtggggtgggc	21	4	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41597865	A	A	41597865	1	1	25	0	1	0	0	0	0	0	0	0	4194	841	29	3		3	CYP2A13	19	41597865	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	6738303	41597865	17531118	531	41940											
ATP1A3	478	broad.mit.edu	37	chr19	42480646	42480646	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgatctcggtgtgattctgCaggatctcgtcgatttgctc	11	10	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42480646	T	T	42480646	2	4	25	1	0	0	0	0	0	0	0	1	1134	697	25	4		4	ATP1A3	19	42480646	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	882781	42480646	16648337	532	41941											
PSG1	5669	broad.mit.edu	37	chr19	43348817	43348817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatccgagggaaggggatGctcctggtctcttaaaggga	15	8	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43348817	T	T	43348817	1	4	25	0	1	0	0	0	0	0	0	0	12759	1334	46	3		3	PSG1	19	43348817	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	868171	43348817	15780166	533	41942											
PSG5	5673	broad.mit.edu	37	chr19	43683099	43683099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtatttcacattcatagGgtcctgcaatatactttgtg	7	9	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43683099	T	T	43683099	1	4	25	0	1	0	0	0	0	0	0	0	12764	1247	43	2		2	PSG5	19	43683099	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	334282	43683099	15445884	534	41943											
PSG4	5672	broad.mit.edu	37	chr19	43707841	43707841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcagcgagtgtctgcaGggtctgaatgcgggaaagga	16	8	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43707841	T	T	43707841	1	4	25	0	1	0	0	0	0	0	0	0	12763	1015	35	2		2	PSG4	19	43707841	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	24742	43707841	15421142	535	41944											
ZNF221	7638	broad.mit.edu	37	chr19	44471333	44471333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagggtccacgggggagagcGaccctataattgtaaggaat	15	7	0	1	rs147168648	byFrequency;by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44471333	T	T	44471333	3	4	25	1	0	0	0	0	1	0	0	0	17901	1058	37	3	1693	3	ZNF221	19	44471333	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	763492	44471333	14657650	536	41945											
PVRL2	5819	broad.mit.edu	37	chr19	45368461	45368461	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcccccttcgtggtgGccctgcctggaggtgtctgg	18	12	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45368461	T	T	45368461	1	4	25	0	1	0	0	0	0	0	0	0	12948	1218	42	3		3	PVRL2	19	45368461	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	897128	45368461	13760522	537	41946											
SYMPK	8189	broad.mit.edu	37	chr19	46324620	46324620	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgcaggggccaggccactgGagtgggggggaagcgcctca	19	11	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46324620	T	T	46324620	1	4	25	0	1	0	0	0	0	0	0	0	15558	1189	41	3		3	SYMPK	19	46324620	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	956159	46324620	12804363	538	41947											
HIF3A	64344	broad.mit.edu	37	chr19	46823599	46823599	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccctccaagcccctgggCgccattgccttctgtaatag	9	15	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46823599	G	G	46823599	1	3	25	0	1	0	0	0	0	0	0	0	7172	783	27	4		4	HIF3A	19	46823599	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	498979	46823599	12305384	539	41948											
PRR12	57479	broad.mit.edu	37	chr19	50128887	50128887	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgccccagcttgtgaggggGgcgcctcctccatgaaccga	13	16	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50128887	C	C	50128887	1	2	25	0	1	0	0	0	0	0	0	0	12690	1247	43	4		4	PRR12	19	50128887	3'UTR	SNP	G	TCGA-05-4430-01A-02D-1265-08	3305288	50128887	9000096	540	41949											
MYBPC2	4606	broad.mit.edu	37	chr19	50957526	50957526	+	Frame_Shift_Del	DEL	C	-	-													ctcctgccccctgcagatgtCccagaccccccggaggctgt							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50957526	-	-	50957526	7	5	25	1	0	1	0	1	0	0	0	0	10106	842	30	0	1984	0	MYBPC2	19	50957526	Frame_Shift_Del	DEL	C	TCGA-05-4430-01A-02D-1265-08	828639	50957526	8171457	541	41950											
SHANK1	50944	broad.mit.edu	37	chr19	51220030	51220030	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctaacagaggccaggctAccaggtgccccactgccctg	10	17	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51220030	G	G	51220030	2	3	25	1	0	0	0	0	0	0	0	1	14377	378	14	5		5	SHANK1	19	51220030	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	262504	51220030	7908953	542	41951											
LIM2	3982	broad.mit.edu	37	chr19	51885853	51885853	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccatggtcattcccacacCtcccctgctctaagtgagag	7	17	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51885853	G	G	51885853	1	3	25	0	1	0	0	0	0	0	0	0	8867	696	24	4		4	LIM2	19	51885853	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	665823	51885853	7243130	543	41952											
SIGLEC6	946	broad.mit.edu	37	chr19	52023487	52023487	+	Frame_Shift_Del	DEL	G	-	-													ggtggtctgaaactatgcctGtctggaactggtgctgatga							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52023487	-	-	52023487	7	5	25	1	0	1	0	1	0	0	0	0	14425	1386	48	0	154	0	SIGLEC6	19	52023487	Frame_Shift_Del	DEL	G	TCGA-05-4430-01A-02D-1265-08	137634	52023487	7105496	544	41953											
ZNF813	126017	broad.mit.edu	37	chr19	53994225	53994225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacaatataaatgtgatGtatgtggcaaggtctttaat	9	3	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53994225	T	T	53994225	3	4	25	1	0	0	0	0	1	0	0	0	18304	1377	48	3	749	3	ZNF813	19	53994225	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1970738	53994225	5134758	545	41954											
PRKCG	5582	broad.mit.edu	37	chr19	54396639	54396639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaactaccccctggaattGtatgaggtgagtagaaccag	11	8	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54396639	T	T	54396639	3	4	25	1	0	0	0	0	1	0	0	0	12618	1368	48	3	967	3	PRKCG	19	54396639	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	402414	54396639	4732344	546	41955											
LILRB5	10990	broad.mit.edu	37	chr19	54760185	54760185	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggactcggcagggctaaaaGagtgggttctgcatagaatc	14	7	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54760185	T	T	54760185	3	4	25	1	0	0	0	0	1	0	0	0	8866	942	33	3	1439	3	LILRB5	19	54760185	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	363546	54760185	4368798	547	41956											
LILRA3	11026	broad.mit.edu	37	chr19	54801976	54801976	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgagtcagcaggtagggGttggagctgagtgagccgta	20	5	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54801976	A	A	54801976	2	1	25	1	0	0	0	0	0	0	0	1	8858	1252	44	4		4	LILRA3	19	54801976	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	41791	54801976	4327007	548	41957											
NLRP2	55655	broad.mit.edu	37	chr19	55501959	55501959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgacacacctgtgcttggCcaagaaccccattgggaata	10	12	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55501959	A	A	55501959	3	1	25	1	0	0	0	0	1	0	0	0	10572	739	26	3	2661	3	NLRP2	19	55501959	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	699983	55501959	3627024	549	41958											
NLRP5	126206	broad.mit.edu	37	chr19	56520127	56520127	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacagtgacttcattgaggcCagtctccctttttctttgtc	7	11	3	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56520127	G	G	56520127	1	3	25	0	1	0	0	0	0	0	0	0	10575	609	21	4		4	NLRP5	19	56520127	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1018168	56520127	2608856	550	41959											
SIRPA	140885	broad.mit.edu	37	chr20	1896081	1896081	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtttaagtctggagcagGcactgagctgtctgtgcgcg	16	8	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1896081	A	A	1896081	3	1	25	1	0	0	0	0	1	0	0	0	14445	1203	42	4	422	4	SIRPA	20	1896081	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08		1896081	61129439	551	41960											
TGM6	343641	broad.mit.edu	37	chr20	2411621	2411621	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatagagagagtgaaggacTgtgcgctgatggtggagggc	18	5	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2411621	A	A	2411621	3	1	25	1	0	0	0	0	1	0	0	0	15957	1580	55	5	1961	5	TGM6	20	2411621	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	515540	2411621	60613899	552	41961											
CPXM1	56265	broad.mit.edu	37	chr20	2779518	2779518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttgatgactcgaatcCggacatgctgttctgaggtc	10	10	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2779518	A	A	2779518	3	1	25	1	0	0	0	0	1	0	0	0	3869	652	23	1	2062	1	CPXM1	20	2779518	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	367897	2779518	60246002	553	41962											
PAK7	57144	broad.mit.edu	37	chr20	9524847	9524847	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccccaggggtggccaggCtcccacctgccacagcctat	11	18	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9524847	G	G	9524847	1	3	25	0	1	0	0	0	0	0	0	0	11499	812	28	4		4	PAK7	20	9524847	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	6745329	9524847	53500673	554	41963											
PAK7	57144	broad.mit.edu	37	chr20	9543473	9543473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatgaagagttcatagtcaCtgcggctttatcctggagaa	10	7	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9543473	T	T	9543473	1	4	25	0	1	0	0	0	0	0	0	0	11499	580	20	4		4	PAK7	20	9543473	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	18626	9543473	53482047	555	41964											
PAK7	57144	broad.mit.edu	37	chr20	9546388	9546388	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatatatgtgcatagaaaAaagactagaaggaaatatta	8	4	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9546388	T	T	9546388	1	4	25	0	1	0	0	0	0	0	0	0	11499	29	1	5		5	PAK7	20	9546388	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2915	9546388	53479132	556	41965											
MACROD2	140733	broad.mit.edu	37	chr20	16025241	16025241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatagtcaggttgacaaGgtaaatgacccaacagagag	11	6	1	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16025241	T	T	16025241	3	4	25	1	0	0	0	0	1	0	0	0	9234	991	35	2	1323	2	MACROD2	20	16025241	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	6478853	16025241	47000279	557	41966											
KIF16B	55614	broad.mit.edu	37	chr20	16360585	16360585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgcagctcgatttcctGctgttccctcagcctctcct	6	17	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16360585	T	T	16360585	3	4	25	1	0	0	0	0	1	0	0	0	8348	1328	46	3	1923	3	KIF16B	20	16360585	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	335344	16360585	46664935	558	41967											
SSTR4	6754	broad.mit.edu	37	chr20	23016906	23016906	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatcaccaggctggtgctGatggtcgtggtcgtctttgt	13	8	2	1	rs72547257		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23016906	T	T	23016906	2	4	25	1	0	0	0	0	0	0	0	1	15318	1277	45	3		3	SSTR4	20	23016906	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	6656321	23016906	40008614	559	41968											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31973519	31973519	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgactcctctccctgccCcgggtgaaaggaacaatgca	11	15	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31973519	A	A	31973519	2	1	25	1	0	0	0	0	0	0	0	1	3175	610	22	2		2	CDK5RAP1	20	31973519	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	8956613	31973519	31052001	560	41969											
SAMHD1	25939	broad.mit.edu	37	chr20	35532555	35532555	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttattactgggctaattaCttacatccactataaaatct	4	8	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35532555	T	T	35532555	1	4	25	0	1	0	0	0	0	0	0	0	13939	580	20	4		4	SAMHD1	20	35532555	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	3559036	35532555	27492965	561	41970											
KIAA1755	85449	broad.mit.edu	37	chr20	36850790	36850790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaggtggtgtggtcccagCtccaagctcctgggccagaa	13	13	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36850790	A	A	36850790	1	1	25	0	1	0	0	0	0	0	0	0	8327	812	28	3		3	KIAA1755	20	36850790	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1318235	36850790	26174730	562	41971											
HNF4A	3172	broad.mit.edu	37	chr20	43043133	43043133	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctccagcattttcttcccTgtatctctcgaagatcacct	4	14	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43043133	C	C	43043133	1	2	25	0	1	0	0	0	0	0	0	0	7320	1595	55	5		5	HNF4A	20	43043133	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	6192343	43043133	19982387	563	41972											
STK4	6789	broad.mit.edu	37	chr20	43625743	43625743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaatgtaattccacatGtattttttattggagcatta	5	6	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43625743	T	T	43625743	1	4	25	0	1	0	0	0	0	0	0	0	15424	1392	48	3		3	STK4	20	43625743	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	582610	43625743	19399777	564	41973											
SLC13A3	64849	broad.mit.edu	37	chr20	45192211	45192211	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggccaggaaaaggtgggAgagacccggagagagaccaa	17	8	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45192211	T	T	45192211	1	4	25	0	1	0	0	0	0	0	0	0	14506	319	11	5		5	SLC13A3	20	45192211	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	1566468	45192211	17833309	565	41974											
GCNT7	140687	broad.mit.edu	37	chr20	55100749	55100750	+	Intron	DEL	TG	-	-													ggtgcgaatatcttcagcttTgtgggcagtatggtcttctt							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55100750	-	-	55100749	6	5	25	0	1	1	0	1	0	0	0	0	6366	1827	63	0		0	GCNT7	20	55100749	Intron	DEL	TG	TCGA-05-4430-01A-02D-1265-08	9908538	55100749	7924771	566	41975											
C20orf107	388799	broad.mit.edu	37	chr20	55108453	55108461	+	Intron	DEL	CCTTTATGT	-	-													gtgcctcacctgcagctatgCctttatgttctcttctctga							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55108461	-	-	55108453	6	5	25	0	1	1	0	1	0	0	0	0	2099	739	26	0		0	C20orf107	20	55108453	Intron	DEL	CCTTTATGT	TCGA-05-4430-01A-02D-1265-08	7704	55108453	7917067	567	41976											
ZNF831	128611	broad.mit.edu	37	chr20	57766620	57766620	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgcggcatcgcctttaaGacccagagcaatctctacaa	7	14	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57766620	T	T	57766620	3	4	25	1	0	0	0	0	1	0	0	0	18314	933	33	3	548	3	ZNF831	20	57766620	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2658167	57766620	5258900	568	41977											
CDH4	1002	broad.mit.edu	37	chr20	60503225	60503225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccaggagtggcccgtgtGgtgacctgtgtctgttccac	14	11	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60503225	T	T	60503225	1	4	25	0	1	0	0	0	0	0	0	0	3142	1363	47	2		2	CDH4	20	60503225	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	2736605	60503225	2522295	569	41978											
SLCO4A1	28231	broad.mit.edu	37	chr20	61303031	61303031	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggcagggacaggactggGacaggcccaccagtatccaa	15	11	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61303031	T	T	61303031	1	4	25	0	1	0	0	0	0	0	0	0	14843	1189	41	3		3	SLCO4A1	20	61303031	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	799806	61303031	1722489	570	41979											
ZBTB46	140685	broad.mit.edu	37	chr20	62421767	62421767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggcttgcacgatgtccGtcatctgcaggaagctggcg	15	11	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62421767	T	T	62421767	3	4	25	1	0	0	0	0	1	0	0	0	17673	1145	40	3	1441	3	ZBTB46	20	62421767	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1118736	62421767	603753	571	41980											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253913	32253913	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgaatgtcactccagactCctgagcttttatatatcctt	6	10	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32253913	A	A	32253913	1	1	25	0	1	0	0	0	0	0	0	0	8588	870	30	3		3	KRTAP11-1	21	32253913	5'Flank	SNP	C	TCGA-05-4430-01A-02D-1265-08		32253913	15875982	572	41981											
ZNF295	49854	broad.mit.edu	37	chr21	43414063	43414063	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtattcgctgctggcagccaAgacgtttttatgagctcgga	12	9	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43414063	C	C	43414063	3	2	25	1	0	0	0	0	1	0	0	0	17953	69	3	5	3062	5	ZNF295	21	43414063	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	11160150	43414063	4715832	573	41982											
C21orf29	54084	broad.mit.edu	37	chr21	45945460	45945460	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgttttctaataagatacAcattcgccctgcctgcaagt	6	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45945460	G	G	45945460	1	3	25	0	1	0	0	0	0	0	0	0	2146	174	6	5		5	C21orf29	21	45945460	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2531397	45945460	2184435	574	41983											
COL18A1	80781	broad.mit.edu	37	chr21	46899969	46899969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggtatgataggcttGtcttgtgttcccagggagac	14	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46899969	T	T	46899969	1	4	25	0	1	0	0	0	0	0	0	0	3707	1392	48	3		3	COL18A1	21	46899969	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	954509	46899969	1229926	575	41984											
CECR2	27443	broad.mit.edu	37	chr22	18020342	18020342	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaaagtcgttgcccccCacacgccgagcgccctcttc	11	17	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18020342	T	T	18020342	2	4	25	1	0	0	0	0	0	0	0	1	3236	581	21	4		4	CECR2	22	18020342	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08		18020342	33284224	576	41985											
HIRA	7290	broad.mit.edu	37	chr22	19319125	19319125	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtgtcagtgaagagaCctagattgtggggactttcc	13	7	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19319125	G	G	19319125	1	3	25	0	1	0	0	0	0	0	0	0	7187	522	18	4		4	HIRA	22	19319125	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1298783	19319125	31985441	577	41986											
HIRA	7290	broad.mit.edu	37	chr22	19365417	19365417	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttattgacagaatcgcctgCaggtctggcactggcagcca	11	11	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19365417	G	G	19365417	3	3	25	1	0	0	0	0	1	0	0	0	7187	710	25	4	1513	4	HIRA	22	19365417	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	46292	19365417	31939149	578	41987											
ADRBK2	157	broad.mit.edu	37	chr22	26000332	26000332	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgttaaaaatgtgtcactCttcccttccagtatccggag	7	10	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26000332	T	T	26000332	1	4	25	0	1	0	0	0	0	0	0	0	344	928	32	4		4	ADRBK2	22	26000332	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	6634915	26000332	25304234	579	41988											
MYO18B	84700	broad.mit.edu	37	chr22	26165096	26165096	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagggtaagtccgggaacGcaggtgaagctcggagtcag	16	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26165096	C	C	26165096	3	2	25	1	0	0	0	0	1	0	0	0	10160	1087	38	4	1223	4	MYO18B	22	26165096	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	164764	26165096	25139470	580	41989											
SEZ6L	23544	broad.mit.edu	37	chr22	26707665	26707665	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagcacaggggacccatcTtctgaaatatagcaccgtgg	10	11	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26707665	C	C	26707665	1	2	25	0	1	0	0	0	0	0	0	0	14256	1624	56	5		5	SEZ6L	22	26707665	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	542569	26707665	24596901	581	41990											
HPS4	89781	broad.mit.edu	37	chr22	26868863	26868863	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactagctgatccagaaaccGcttgcagctgacatcaggga	10	11	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26868863	A	A	26868863	3	1	25	1	0	0	0	0	1	0	0	0	7408	1086	38	4	1847	4	HPS4	22	26868863	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	161198	26868863	24435703	582	41991											
PISD	23761	broad.mit.edu	37	chr22	32058294	32058294	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggccaatgagaaaagcgCgggttgggggcggagccgac	20	8	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32058294	A	A	32058294	1	1	25	0	1	0	0	0	0	0	0	0	12041	783	27	3		3	PISD	22	32058294	5'Flank	SNP	C	TCGA-05-4430-01A-02D-1265-08	5189431	32058294	19246272	583	41992											
MYH9	4627	broad.mit.edu	37	chr22	36708162	36708162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggcttctggaacttggGgtgggtgccctgctcctgca	15	11	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36708162	T	T	36708162	3	4	25	1	0	0	0	0	1	0	0	0	10136	1232	43	2	4334	2	MYH9	22	36708162	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4649868	36708162	14596404	584	41993											
MKL1	57591	broad.mit.edu	37	chr22	40859299	40859299	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactgtagcactgcagggCagcagagagagaggagagat	15	7	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40859299	A	A	40859299	1	1	25	0	1	0	0	0	0	0	0	0	9694	725	25	3		3	MKL1	22	40859299	5'UTR	SNP	C	TCGA-05-4430-01A-02D-1265-08	4151137	40859299	10445267	585	41994											
CYP2D6	1565	broad.mit.edu	37	chr22	42524020	42524020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcatactcgggacagaacGgggtagcccccaaatgacct	12	12	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42524020	T	T	42524020	1	4	25	0	1	0	0	0	0	0	0	0	4202	1131	39	1		1	CYP2D6	22	42524020	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	1664721	42524020	8780546	586	41995											
TTLL1	25809	broad.mit.edu	37	chr22	43460246	43460246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagaacgtacaagcgcagGtcgaacttcctcccgccaat	8	15	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43460246	T	T	43460246	3	4	25	1	0	0	0	0	1	0	0	0	16848	1252	44	3	707	3	TTLL1	22	43460246	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	936226	43460246	7844320	587	41996											
HDAC10	83933	broad.mit.edu	37	chr22	50684054	50684054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctccccaccgatctgtgCggcagagccaggccccaggg	13	18	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50684054	A	A	50684054	1	1	25	0	1	0	0	0	0	0	0	0	7072	783	27	3		3	HDAC10	22	50684054	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	7223808	50684054	620512	588	41997											
PLCXD1	55344	broad.mit.edu	37	chrX	209615	209615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttatactcgtgttgggccGgtgtcccgacttcccagccc	11	14	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209615	T	T	209615	1	4	25	0	1	0	0	0	0	0	0	0	12136	1131	39	1		1	PLCXD1	23	209615	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08		209615	155060945	589	41998											
ARSE	415	broad.mit.edu	37	chrX	2878481	2878481	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgtaagacataaagatgtCcacaatcacattgacagcag	7	10	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2878481	A	A	2878481	1	1	25	0	1	0	0	0	0	0	0	0	994	870	30	3		3	ARSE	23	2878481	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2668866	2878481	152392079	590	41999											
MXRA5	25878	broad.mit.edu	37	chrX	3235287	3235287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgcccgtgatgcgcgcGttggctgctgcacgctgcac	16	13	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3235287	T	T	3235287	3	4	25	1	0	0	0	0	1	0	0	0	10097	1136	40	3	2059	3	MXRA5	23	3235287	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	356806	3235287	152035273	591	42000											
OFD1	8481	broad.mit.edu	37	chrX	13779148	13779148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctttagaaaccacgttGgtatcttctccgtgcaattg	8	10	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13779148	T	T	13779148	1	4	25	0	1	0	0	0	0	0	0	0	10933	1363	47	2		2	OFD1	23	13779148	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	10543861	13779148	141491412	592	42001											
MOSPD2	158747	broad.mit.edu	37	chrX	14934407	14934407	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagcagaattaactcaGttttggaaagaagttcccag	10	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14934407	A	A	14934407	2	1	25	1	0	0	0	0	0	0	0	1	9810	1020	36	4		4	MOSPD2	23	14934407	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1155259	14934407	140336153	593	42002											
NHS	4810	broad.mit.edu	37	chrX	17744628	17744628	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtaataagagctatgTctgtcactatgcagccctgg	10	9	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17744628	C	C	17744628	3	2	25	1	0	0	0	0	1	0	0	0	10506	1667	58	5	2466	5	NHS	23	17744628	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	2810221	17744628	137525932	594	42003											
SMS	6611	broad.mit.edu	37	chrX	21989934	21989934	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcagtggtcttttaattgGgtgacatctctctctctctc	9	10	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21989934	C	C	21989934	1	2	25	0	1	0	0	0	0	0	0	0	14927	1247	43	4		4	SMS	23	21989934	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	4245306	21989934	133280626	595	42004											
POLA1	5422	broad.mit.edu	37	chrX	24948526	24948526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgatccccatcgcttccCcctccccagtagtagtattc	7	16	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24948526	A	A	24948526	1	1	25	0	1	0	0	0	0	0	0	0	12282	638	22	2		2	POLA1	23	24948526	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2958592	24948526	130322034	596	42005											
FAM47A	158724	broad.mit.edu	37	chrX	34149308	34149309	+	Frame_Shift_Ins	INS	-	A	A													agtcttgggaggcgctaggcINSggagacgggacactccagtc							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34149309	A	A	34149308	7	5	25	1	0	1	1	0	0	0	0	0	5620	768	27	0	1291	0	FAM47A	23	34149308	Frame_Shift_Ins	INS	-	TCGA-05-4430-01A-02D-1265-08	9200782	34149308	121121252	597	42006											
CXorf59	286464	broad.mit.edu	37	chrX	36122683	36122683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatatgtgtgcaaaataCaccaaaagtcaatccttgtt	5	11	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36122683	A	A	36122683	3	1	25	1	0	0	0	0	1	0	0	0	4148	478	17	3	946	3	CXorf59	23	36122683	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1973375	36122683	119147877	598	42007											
CXorf59	286464	broad.mit.edu	37	chrX	36163017	36163017	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaatggggcctgcactGtagcttccctggtttggggg	15	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36163017	T	T	36163017	1	4	25	0	1	0	0	0	0	0	0	0	4148	1392	48	3		3	CXorf59	23	36163017	3'UTR	SNP	G	TCGA-05-4430-01A-02D-1265-08	40334	36163017	119107543	599	42008											
CYBB	1536	broad.mit.edu	37	chrX	37658247	37658247	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcagagagtttggctgtGcataatataacagtttgtga	11	6	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37658247	T	T	37658247	2	4	25	1	0	0	0	0	0	0	0	1	4166	1306	46	3		3	CYBB	23	37658247	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1495230	37658247	117612313	600	42009											
RPGR	6103	broad.mit.edu	37	chrX	38132681	38132681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttggtgttgtttcactGttttctaggatttctaatga	9	5	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38132681	T	T	38132681	3	4	25	1	0	0	0	0	1	0	0	0	13659	1368	48	3	256	3	RPGR	23	38132681	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	474434	38132681	117137879	601	42010											
USP9X	8239	broad.mit.edu	37	chrX	41012324	41012324	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatggaaagcatgagactAtatgctagaggtatgtattg	11	4	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41012324	G	G	41012324	2	3	25	1	0	0	0	0	0	0	0	1	17217	436	16	5		5	USP9X	23	41012324	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	2879643	41012324	114258236	602	42011											
MAOB	4129	broad.mit.edu	37	chrX	43656531	43656531	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctgcacaggaagaaacaAgagcaaacttggcaaacgca	10	9	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43656531	G	G	43656531	1	3	25	0	1	0	0	0	0	0	0	0	9318	87	3	5		5	MAOB	23	43656531	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	2644207	43656531	111614029	603	42012											
ZNF674	641339	broad.mit.edu	37	chrX	46387869	46387869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatcacatctggcttccCaactagatgccctgtttagg	9	11	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46387869	A	A	46387869	3	1	25	1	0	0	0	0	1	0	0	0	18208	594	21	2	1599	2	ZNF674	23	46387869	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2731338	46387869	108882691	604	42013											
ZNF81	347344	broad.mit.edu	37	chrX	47774732	47774732	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catggtcaagtttttacccaGaactcttcttatagtcacca	5	11	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47774732	C	C	47774732	3	2	25	1	0	0	0	0	1	0	0	0	18303	933	33	4	701	4	ZNF81	23	47774732	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1386863	47774732	107495828	605	42014											
TIMM17B	10245	broad.mit.edu	37	chrX	48754088	48754088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctggaagactccgccaCcgatgacacccatagtgaag	11	13	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48754088	A	A	48754088	3	1	25	1	0	0	0	0	1	0	0	0	16032	507	18	3	612	3	TIMM17B	23	48754088	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	979356	48754088	106516472	606	42015											
DGKK	139189	broad.mit.edu	37	chrX	50119912	50119912	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacattttcattgagttctcAaagtcctggagatgaataca	7	8	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50119912	G	G	50119912	2	3	25	1	0	0	0	0	0	0	0	1	4512	127	5	5		5	DGKK	23	50119912	Silent	SNP	A	TCGA-05-4430-01A-02D-1265-08	1365824	50119912	105150648	607	42016											
ITIH5L	347365	broad.mit.edu	37	chrX	54781365	54781365	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactaatacattacttccctCtggtctcccacaatgtcaat	3	13	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54781365	A	A	54781365	1	1	25	0	1	0	0	0	0	0	0	0	7978	928	32	3		3	ITIH5L	23	54781365	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	4661453	54781365	100489195	608	42017											
RRAGB	10325	broad.mit.edu	37	chrX	55784734	55784734	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaaacactttgaaaagctGgaaagagtggatggaccaaa	12	5	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55784734	C	C	55784734	2	2	25	1	0	0	0	0	0	0	0	1	13784	1335	47	4		4	RRAGB	23	55784734	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1003369	55784734	99485826	609	42018											
AR	367	broad.mit.edu	37	chrX	66937280	66937280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttagctcaacccgtcaGtacccagactgaccactgcc	7	16	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66937280	T	T	66937280	1	4	25	0	1	0	0	0	0	0	0	0	838	1044	36	3		3	AR	23	66937280	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	11152546	66937280	88333280	610	42019											
SLC7A3	84889	broad.mit.edu	37	chrX	70149736	70149736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccacacccagggccaCtaaatccagggtgcttaggc	11	15	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70149736	A	A	70149736	3	1	25	1	0	0	0	0	1	0	0	0	14812	565	20	3	1791	3	SLC7A3	23	70149736	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3212456	70149736	85120824	611	42020											
MED12	9968	broad.mit.edu	37	chrX	70342990	70342990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcattgctatgtgaatggGctgtcagctgcaagcgttct	12	8	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70342990	T	T	70342990	3	4	25	1	0	0	0	0	1	0	0	0	9521	1203	42	3	1573	3	MED12	23	70342990	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	193254	70342990	84927570	612	42021											
TAF1	6872	broad.mit.edu	37	chrX	70607399	70607399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggctcatggctgtaatcccAgcactttgggaggccgcggt	14	12	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70607399	T	T	70607399	1	4	25	0	1	0	0	0	0	0	0	0	15632	203	7	5		5	TAF1	23	70607399	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	264409	70607399	84663161	613	42022											
TAF1	6872	broad.mit.edu	37	chrX	70678026	70678026	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccagtaaatgccttaaagGggagttatctgtatttattt	8	6	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70678026	C	C	70678026	1	2	25	0	1	0	0	0	0	0	0	0	15632	1247	43	4		4	TAF1	23	70678026	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	70627	70678026	84592534	614	42023											
ERCC6L	54821	broad.mit.edu	37	chrX	71426670	71426670	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttttatatcagatttcctCtgagcagcatgcaaagactg	8	8	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71426670	A	A	71426670	3	1	25	1	0	0	0	0	1	0	0	0	5260	912	32	3	1809	3	ERCC6L	23	71426670	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	748644	71426670	83843890	615	42024											
KIAA2022	340533	broad.mit.edu	37	chrX	73963899	73963899	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttagatcaccaactttcaGactgatccctggctcaggat	7	11	3	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73963899	C	C	73963899	3	2	25	1	0	0	0	0	1	0	0	0	8339	933	33	4	4065	4	KIAA2022	23	73963899	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	2537229	73963899	81306661	616	42025											
MAGEE1	57692	broad.mit.edu	37	chrX	75649077	75649077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacccccgtgccacccaccCgtgatgagggaccgagcacc	11	19	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75649077	A	A	75649077	3	1	25	1	0	0	0	0	1	0	0	0	9277	652	23	1	756	1	MAGEE1	23	75649077	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1685178	75649077	79621483	617	42026											
MAGT1	84061	broad.mit.edu	37	chrX	77086363	77086363	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccaactgaagaataataCaacaagtccaataccagcca	4	12	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77086363	A	A	77086363	3	1	25	1	0	0	0	0	1	0	0	0	9288	478	17	3	84	3	MAGT1	23	77086363	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1437286	77086363	78184197	618	42027											
ATP7A	538	broad.mit.edu	37	chrX	77296343	77296343	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcattatcactgagtagtCctatctggttccttcaagaa	6	9	4	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77296343	A	A	77296343	1	1	25	0	1	0	0	0	0	0	0	0	1194	870	30	3		3	ATP7A	23	77296343	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	209980	77296343	77974217	619	42028											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913592	77913592	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggactctggggctgctGgggcctcctggagttcccag	16	13	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77913592	A	A	77913592	3	1	25	1	0	0	0	0	1	0	0	0	17717	1348	47	4	1105	4	ZCCHC5	23	77913592	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	617249	77913592	77356968	620	42029											
APOOL	139322	broad.mit.edu	37	chrX	84306563	84306563	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagagatttctgattaattGttccagttacctactgatgt	7	7	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84306563	C	C	84306563	1	2	25	0	1	0	0	0	0	0	0	0	816	1392	48	4		4	APOOL	23	84306563	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	6392971	84306563	70963997	621	42030											
CSTF2	1478	broad.mit.edu	37	chrX	100086550	100086550	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcagcggggatccttgccTgcgaatgtcccaacccctcg	11	15	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100086550	A	A	100086550	2	1	25	1	0	0	0	0	0	0	0	1	4018	1567	55	5		5	CSTF2	23	100086550	Silent	SNP	T	TCGA-05-4430-01A-02D-1265-08	15779987	100086550	55184010	622	42031											
BTK	695	broad.mit.edu	37	chrX	100615021	100615021	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaataaatatatatataTatagagagagagagttcctc	6	3	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100615021	G	G	100615021	1	3	25	0	1	0	0	0	0	0	0	0	1567	1421	49	5		5	BTK	23	100615021	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	528471	100615021	54655539	623	42032											
ZMAT1	84460	broad.mit.edu	37	chrX	101166804	101166804	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaccaaggaaaagccctatCggtgcaatgagtgtgggaaa	12	8	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101166804	T	T	101166804	1	4	25	0	1	0	0	0	0	0	0	0	17817	899	31	4		4	ZMAT1	23	101166804	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	551783	101166804	54103756	624	42033											
ARMCX5	64860	broad.mit.edu	37	chrX	101858804	101858804	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagttgcaatatgaaaccAatgcatattgtaattataaa	7	4	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101858804	T	T	101858804	1	4	25	0	1	0	0	0	0	0	0	0	966	145	5	5		5	ARMCX5	23	101858804	3'UTR	SNP	A	TCGA-05-4430-01A-02D-1265-08	692000	101858804	53411756	625	42034											
BHLHB9	80823	broad.mit.edu	37	chrX	102004639	102004639	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttagatcccaggcaccatCtgaggcaagccctccttcat	7	14	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102004639	T	T	102004639	3	4	25	1	0	0	0	0	1	0	0	0	1426	913	32	4	718	4	BHLHB9	23	102004639	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	145835	102004639	53265921	626	42035											
PLP1	5354	broad.mit.edu	37	chrX	103043326	103043327	+	Intron	DNP	CC	AA	AA													ctccatgtggccccgtaactCcataaagcttaccctgcttg							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	103043327	AA	AA	103043326	1	1	25	0	1	0	0	0	0	0	0	0	12199	870	30	3		3	PLP1	23	103043326	Intron	DNP	CC	TCGA-05-4430-01A-02D-1265-08	1038687	103043326	52227234	627	42036											
CXorf57	55086	broad.mit.edu	37	chrX	105879710	105879710	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagaagcattgtgttagatCctgatcttgttatgtcctat	9	6	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105879710	A	A	105879710	1	1	25	0	1	0	0	0	0	0	0	0	4146	870	30	3		3	CXorf57	23	105879710	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2836384	105879710	49390850	628	42037											
ATG4A	115201	broad.mit.edu	37	chrX	107381398	107381398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggaaaaccaaataacgCgtattatttcataggattct	8	6	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107381398	A	A	107381398	3	1	25	1	0	0	0	0	1	0	0	0	1100	768	27	3	825	3	ATG4A	23	107381398	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1501688	107381398	47889162	629	42038											
COL4A6	1288	broad.mit.edu	37	chrX	107424191	107424191	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaataatacagggcagGgtgattcctgtaaatggtaa	12	6	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107424191	T	T	107424191	2	4	25	1	0	0	0	0	0	0	0	1	3727	1219	43	2		2	COL4A6	23	107424191	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	42793	107424191	47846369	630	42039											
COL4A6	1288	broad.mit.edu	37	chrX	107448831	107448831	+	Intron	DEL	G	-	-													aaccaaaccagtatctctctGggaaatccagagtacttagg							TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107448831	-	-	107448831	6	5	25	0	1	1	0	1	0	0	0	0	3727	1363	47	0		0	COL4A6	23	107448831	Intron	DEL	G	TCGA-05-4430-01A-02D-1265-08	24640	107448831	47821729	631	42040											
COL4A6	1288	broad.mit.edu	37	chrX	107626661	107626661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccctgatggcttcctgGgctatccctgtgcctcctac	8	16	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107626661	T	T	107626661	1	4	25	0	1	0	0	0	0	0	0	0	3727	1247	43	2		2	COL4A6	23	107626661	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	177830	107626661	47643899	632	42041											
COL4A5	1287	broad.mit.edu	37	chrX	107821581	107821581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcagtgaacagaaaagaCcaattgatgtagagtttcag	10	5	2	6			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107821581	A	A	107821581	3	1	25	1	0	0	0	0	1	0	0	0	3726	507	18	3	798	3	COL4A5	23	107821581	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	194920	107821581	47448979	633	42042											
COL4A5	1287	broad.mit.edu	37	chrX	107823685	107823685	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagtttattaaaaatgctcCtagctagctctagtgcttag	7	8	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107823685	G	G	107823685	1	3	25	0	1	0	0	0	0	0	0	0	3726	696	24	4		4	COL4A5	23	107823685	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	2104	107823685	47446875	634	42043											
GUCY2F	2986	broad.mit.edu	37	chrX	108708514	108708514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgggttgttccttaggaCccggtagggggtgtgcttat	15	7	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108708514	A	A	108708514	3	1	25	1	0	0	0	0	1	0	0	0	6963	507	18	3	2505	3	GUCY2F	23	108708514	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	884829	108708514	46562046	635	42044											
CHRDL1	91851	broad.mit.edu	37	chrX	109937257	109937257	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctgactatacccacagaCttgatgctaagtgagccaca	7	13	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109937257	G	G	109937257	1	3	25	0	1	0	0	0	0	0	0	0	3404	580	20	4		4	CHRDL1	23	109937257	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1228743	109937257	45333303	636	42045											
TRPC5	7224	broad.mit.edu	37	chrX	111090471	111090471	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctagtagtaccaggcagTagataaagaggaatttgagg	13	4	0	3	rs3027722		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111090471	A	A	111090471	3	1	25	1	0	0	0	0	1	0	0	0	16707	1638	57	5	1374	5	TRPC5	23	111090471	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	1153214	111090471	44180089	637	42046											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698312	111698312	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catatctgggcctgacaagaGtaccttactgaagcaatatg	9	9	1	3	rs149089921		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111698312	C	C	111698312	3	2	25	1	0	0	0	0	1	0	0	0	17710	1029	36	4	358	4	ZCCHC16	23	111698312	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	607841	111698312	43572248	638	42047											
IL13RA2	3598	broad.mit.edu	37	chrX	114250291	114250291	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catattccactgtgcattccTtaaaatgatccagagacagt	6	10	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114250291	A	A	114250291	3	1	25	1	0	0	0	0	1	0	0	0	7700	1609	56	5	986	5	IL13RA2	23	114250291	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	2551979	114250291	41020269	639	42048											
SLC6A14	11254	broad.mit.edu	37	chrX	115574996	115574996	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacttttaagtagatgttAtcttaaaatttgtacaaaac	4	4	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115574996	G	G	115574996	1	3	25	0	1	0	0	0	0	0	0	0	14791	464	16	5		5	SLC6A14	23	115574996	Intron	SNP	A	TCGA-05-4430-01A-02D-1265-08	1324705	115574996	39695564	640	42049											
UPF3B	65109	broad.mit.edu	37	chrX	118975155	118975155	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttccatttcctcctctcttCttctctttgtctttttcttt	1	13	5	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118975155	A	A	118975155	4	1	25	1	0	0	0	0	0	1	0	0	17132	922	32	3	780	3	UPF3B	23	118975155	Nonsense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	3400159	118975155	36295405	641	42050											
MCTS1	28985	broad.mit.edu	37	chrX	119738114	119738114	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcaagaagtaaggacatgCtgtggcctccatcggctgct	12	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119738114	T	T	119738114	1	4	25	0	1	0	0	0	0	0	0	0	9495	812	28	4		4	MCTS1	23	119738114	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	762959	119738114	35532446	642	42051											
THOC2	57187	broad.mit.edu	37	chrX	122765624	122765624	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattacagagtacatcaattGaaggcactcgctttatataa	6	8	1	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122765624	T	T	122765624	4	4	25	1	0	0	0	0	0	1	0	0	15988	1294	45	3	2453	3	THOC2	23	122765624	Nonsense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	3027510	122765624	32504936	643	42052											
ODZ1	10178	broad.mit.edu	37	chrX	123515111	123515111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgaaattcctgagctGtttctggagttcacactgaa	10	7	2	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123515111	T	T	123515111	3	4	25	1	0	0	0	0	1	0	0	0	10929	1386	48	3	728	3	ODZ1	23	123515111	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	749487	123515111	31755449	644	42053											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298776	125298776	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggaacttctgggcgcGgatgtcatagaagagcaggg	15	9	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298776	A	A	125298776	3	1	25	1	0	0	0	0	1	0	0	0	4298	1116	39	4	263	4	DCAF12L2	23	125298776	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	1783665	125298776	29971784	645	42054											
SMARCA1	6594	broad.mit.edu	37	chrX	128582495	128582495	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgctgacaactatttaactGtatgatttctgtggtataga	8	6	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128582495	A	A	128582495	1	1	25	0	1	0	0	0	0	0	0	0	14882	1392	48	4		4	SMARCA1	23	128582495	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	3283719	128582495	26688065	646	42055											
RAB33A	9363	broad.mit.edu	37	chrX	129318306	129318306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgtttccgcaaaagcatGgtcgagcattactaccgcaa	9	11	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129318306	T	T	129318306	3	4	25	1	0	0	0	0	1	0	0	0	13030	1348	47	2	312	2	RAB33A	23	129318306	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	735811	129318306	25952254	647	42056											
IGSF1	3547	broad.mit.edu	37	chrX	130415509	130415509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaattgtgagaccacccCaggggaagggtgctgaaacc	15	9	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130415509	A	A	130415509	1	1	25	0	1	0	0	0	0	0	0	0	7666	609	21	2		2	IGSF1	23	130415509	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1097203	130415509	24855051	648	42057											
HS6ST2	90161	broad.mit.edu	37	chrX	131803237	131803237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttatccttactatacccaCagaaagaatagaaaacatat	4	8	0	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131803237	A	A	131803237	1	1	25	0	1	0	0	0	0	0	0	0	7438	493	17	3		3	HS6ST2	23	131803237	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1387728	131803237	23467323	649	42058											
PHF6	84295	broad.mit.edu	37	chrX	133527957	133527957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtctattgccgaaaacaCaagaaaactgcacataactc	7	10	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133527957	A	A	133527957	3	1	25	1	0	0	0	0	1	0	0	0	11933	477	17	3	407	3	PHF6	23	133527957	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	1724720	133527957	21742603	650	42059											
PHF6	84295	broad.mit.edu	37	chrX	133549067	133549067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttcttctggcacagtcCagctcacaacaacatcaaga	6	12	4	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133549067	A	A	133549067	3	1	25	1	0	0	0	0	1	0	0	0	11933	595	21	2	780	2	PHF6	23	133549067	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	21110	133549067	21721493	651	42060											
DDX26B	203522	broad.mit.edu	37	chrX	134681099	134681099	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacacaaagaatgttgaaTcaatgtttagaatctctagt	7	5	2	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134681099	A	A	134681099	3	1	25	1	0	0	0	0	1	0	0	0	4386	1432	50	5	673	5	DDX26B	23	134681099	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	1132032	134681099	20589461	652	42061											
DDX26B	203522	broad.mit.edu	37	chrX	134711002	134711002	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaaatgaaagaaaaaaaGacatattcgtgatataatgc	6	3	0	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134711002	T	T	134711002	1	4	25	0	1	0	0	0	0	0	0	0	4386	957	33	3		3	DDX26B	23	134711002	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	29903	134711002	20559558	653	42062											
ARHGEF6	9459	broad.mit.edu	37	chrX	135789232	135789232	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaatgtaaaataggaaaCaggaggcaaaggaagattat	11	3	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135789232	T	T	135789232	1	4	25	0	1	0	0	0	0	0	0	0	912	493	17	4		4	ARHGEF6	23	135789232	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	1078230	135789232	19481328	654	42063											
ARHGEF6	9459	broad.mit.edu	37	chrX	135861768	135861768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttaaggtgtggggcaaCactgctgtcaatccaggaag	12	10	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135861768	A	A	135861768	1	1	25	0	1	0	0	0	0	0	0	0	912	493	17	3		3	ARHGEF6	23	135861768	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	72536	135861768	19408792	655	42064											
MAGEC3	139081	broad.mit.edu	37	chrX	140953460	140953460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagttttagccctgccctcCctgtgctgttagccctgggt	12	13	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140953460	A	A	140953460	1	1	25	0	1	0	0	0	0	0	0	0	9274	638	22	2		2	MAGEC3	23	140953460	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	5091692	140953460	14317100	656	42065											
MAGEC1	9947	broad.mit.edu	37	chrX	140993253	140993253	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagagttcctctgagagTcctcagagttgtcctgaggg	12	11	2	4			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140993253	A	A	140993253	3	1	25	1	0	0	0	0	1	0	0	0	9272	1664	58	5	69	5	MAGEC1	23	140993253	Missense_Mutation	SNP	T	TCGA-05-4430-01A-02D-1265-08	39793	140993253	14277307	657	42066											
SLITRK4	139065	broad.mit.edu	37	chrX	142717965	142717965	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagattgcggttggagagGgctttgcctgcaacgattcc	14	9	0	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142717965	T	T	142717965	2	4	25	1	0	0	0	0	0	0	0	1	14859	1219	43	2		2	SLITRK4	23	142717965	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	1724712	142717965	12552595	658	42067											
SLITRK2	84631	broad.mit.edu	37	chrX	144906317	144906317	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccttcctatgaatctcgaCgccaaaaccaagacagaatc	5	15	1	3	rs148553713		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144906317	G	G	144906317	3	3	25	1	0	0	0	0	1	0	0	0	14857	536	19	4	2376	4	SLITRK2	23	144906317	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	2188352	144906317	10364243	659	42068											
MAMLD1	10046	broad.mit.edu	37	chrX	149638184	149638184	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaactgcaggtccctccattGacaataaatcctagccctgc	7	14	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149638184	C	C	149638184	3	2	25	1	0	0	0	0	1	0	0	0	9300	1281	45	4	349	4	MAMLD1	23	149638184	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	4731867	149638184	5632376	660	42069			1	36		6	6	1043	G		4.867829e-11
MAMLD1	10046	broad.mit.edu	37	chrX	149638523	149638523	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actcccaagccttcggttcaGatgtcacacttggagagcct	9	13	2	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149638523	C	C	149638523	3	2	25	1	0	0	0	0	1	0	0	0	9300	933	33	4	688	4	MAMLD1	23	149638523	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	339	149638523	5632037	661	42070			1	36		6	6	1043	G		4.867829e-11
MAMLD1	10046	broad.mit.edu	37	chrX	149638601	149638601	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttactggcatgtcacttcaGatcccatcctcctccacagg	7	15	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149638601	A	A	149638601	2	1	25	1	0	0	0	0	0	0	0	1	9300	933	33	4		4	MAMLD1	23	149638601	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	78	149638601	5631959	662	42071			1	36		6	6	1043	G		4.867829e-11
MAMLD1	10046	broad.mit.edu	37	chrX	149638622	149638622	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcccatcctcctccacaggGatcagctattcgattccttc	5	16	1	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149638622	A	A	149638622	2	1	25	1	0	0	0	0	0	0	0	1	9300	1161	41	4		4	MAMLD1	23	149638622	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	21	149638622	5631938	663	42072			1	36		6	6	1043	G		4.867829e-11
MAMLD1	10046	broad.mit.edu	37	chrX	149638634	149638634	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccacagggatcagctattcGattccttccaccagtaagca	7	13	1	0	rs150886306		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149638634	A	A	149638634	2	1	25	1	0	0	0	0	0	0	0	1	9300	1045	37	4		4	MAMLD1	23	149638634	Silent	SNP	G	TCGA-05-4430-01A-02D-1265-08	12	149638634	5631926	664	42073			1	36		6	6	1043	G		4.867829e-11
MAMLD1	10046	broad.mit.edu	37	chrX	149639226	149639226	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtccccaccctatcgcccaGagaagctctctagcccaggc	8	19	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149639226	C	C	149639226	3	2	25	1	0	0	0	0	1	0	0	0	9300	943	33	4	1391	4	MAMLD1	23	149639226	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	592	149639226	5631334	665	42074			1	36		6	6	1043	G		4.867829e-11
PASD1	139135	broad.mit.edu	37	chrX	150841005	150841005	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtgacgtatctgtgccCctctgcaatcaccctgttag	8	15	3	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150841005	A	A	150841005	2	1	25	1	0	0	0	0	0	0	0	1	11565	610	22	2		2	PASD1	23	150841005	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	1201779	150841005	4429555	666	42075											
PRRG3	79057	broad.mit.edu	37	chrX	150867152	150867152	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaaggtgctgcttcaaccTtttgaccacgccagtgggag	11	12	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150867152	A	A	150867152	1	1	25	0	1	0	0	0	0	0	0	0	12713	1624	56	5		5	PRRG3	23	150867152	Intron	SNP	T	TCGA-05-4430-01A-02D-1265-08	26147	150867152	4403408	667	42076											
CNGA2	1260	broad.mit.edu	37	chrX	150912053	150912053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctttgacttcctgattGgcgtcctcatctttgccacc	6	14	4	2			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150912053	T	T	150912053	3	4	25	1	0	0	0	0	1	0	0	0	3629	1348	47	2	1100	2	CNGA2	23	150912053	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	44901	150912053	4358507	668	42077											
MAGEA12	4111	broad.mit.edu	37	chrX	151899893	151899893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagcccattcatgcaggGgtgggtaggaaatgtgaggt	15	5	1	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151899893	T	T	151899893	3	4	25	1	0	0	0	0	1	0	0	0	9254	1232	43	2	40	2	MAGEA12	23	151899893	Missense_Mutation	SNP	G	TCGA-05-4430-01A-02D-1265-08	987840	151899893	3370667	669	42078											
SRPK3	26576	broad.mit.edu	37	chrX	153048470	153048470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacacggacatcaagccCgagaacatcttgctgtgtgt	9	12	2	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153048470	A	A	153048470	2	1	25	1	0	0	0	0	0	0	0	1	15279	639	23	1		1	SRPK3	23	153048470	Silent	SNP	C	TCGA-05-4430-01A-02D-1265-08	1148577	153048470	2222090	670	42079											
PDZD4	57595	broad.mit.edu	37	chrX	153069157	153069157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataccgctgcgctcctccCggatcttcagggcacgggct	11	16	3	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153069157	A	A	153069157	3	1	25	1	0	0	0	0	1	0	0	0	11797	652	23	1	352	1	PDZD4	23	153069157	Missense_Mutation	SNP	C	TCGA-05-4430-01A-02D-1265-08	20687	153069157	2201403	671	42080											
PDZD4	57595	broad.mit.edu	37	chrX	153095669	153095669	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccgcggagggccgcgccCccgccgcagcgccggcggcc	16	22	0	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153095669	T	T	153095669	1	4	25	0	1	0	0	0	0	0	0	0	11797	638	22	4		4	PDZD4	23	153095669	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	26512	153095669	2174891	672	42081											
AVPR2	554	broad.mit.edu	37	chrX	153171897	153171897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagccgtggctagggctgaCggggccacttgggcttggcc	18	11	0	1			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153171897	A	A	153171897	1	1	25	0	1	0	0	0	0	0	0	0	1238	551	19	3		3	AVPR2	23	153171897	Intron	SNP	C	TCGA-05-4430-01A-02D-1265-08	76228	153171897	2098663	673	42082											
MPP1	4354	broad.mit.edu	37	chrX	154007556	154007556	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaccattattgaccagtgAgaggtcaaagtagtgagcgt	11	7	1	3			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154007556	T	T	154007556	3	4	25	1	0	0	0	0	1	0	0	0	9827	304	11	5	107	5	MPP1	23	154007556	Missense_Mutation	SNP	A	TCGA-05-4430-01A-02D-1265-08	835659	154007556	1263004	674	42083											
F8	2157	broad.mit.edu	37	chrX	154124611	154124611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctacattgctacaggtgtGtccatcattaccttaggtgt	8	9	2	0			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154124611	T	T	154124611	1	4	25	0	1	0	0	0	0	0	0	0	5393	1392	48	3		3	F8	23	154124611	Intron	SNP	G	TCGA-05-4430-01A-02D-1265-08	117055	154124611	1145949	675	42084											
C1orf159	54991	broad.mit.edu	37	chr1	1019650	1019650	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccagagccaggcaaaccCgtttggggacaaacccacag	11	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1019650	A	A	1019650	2	1	26	1	0	0	0	0	0	0	0	1	2028	667	23	1		1	C1orf159	1	1019650	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08		1019650	248230971	1	42085											
KIAA1751	85452	broad.mit.edu	37	chr1	1919949	1919949	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcggcctcagccccagctcAcctcatcttctcagtgaaaa	7	16	5	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1919949	T	T	1919949	5	4	26	1	0	0	0	0	0	0	1	0	8326	173	6	5	2050	5	KIAA1751	1	1919949	Splice_Site	SNP	A	TCGA-05-4432-01A-01D-1265-08	900299	1919949	247330672	2	42086											
DFFB	1677	broad.mit.edu	37	chr1	3784374	3784374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagtaagctgtgttcgtGccactgtactccagcctgga	11	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3784374	T	T	3784374	1	4	26	0	1	0	0	0	0	0	0	0	4493	1334	46	3		3	DFFB	1	3784374	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1864425	3784374	245466247	3	42087											
AJAP1	55966	broad.mit.edu	37	chr1	4834458	4834458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggtcaagtaccagcacGccaaagcccatttttctgtt	7	12	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4834458	T	T	4834458	1	4	26	0	1	0	0	0	0	0	0	0	438	1102	38	3		3	AJAP1	1	4834458	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1050084	4834458	244416163	4	42088											
CAMTA1	23261	broad.mit.edu	37	chr1	7811040	7811040	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatattttagggaaaaaaTatatgtctgaaggcaaccct	8	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7811040	C	C	7811040	1	2	26	0	1	0	0	0	0	0	0	0	2639	1421	49	5		5	CAMTA1	1	7811040	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2976582	7811040	241439581	5	42089											
TNFRSF9	3604	broad.mit.edu	37	chr1	8000139	8000139	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggtctcacaaatgtcactCtgcaaaagataaacatttcc	5	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8000139	A	A	8000139	5	1	26	1	0	0	0	0	0	0	1	0	16423	927	32	3		3	TNFRSF9	1	8000139	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	189099	8000139	241250482	6	42090											
KIF1B	23095	broad.mit.edu	37	chr1	10342421	10342421	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataagcatagatacttgctaGcctctgagaatcaacgccct	7	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10342421	C	C	10342421	3	2	26	1	0	0	0	0	1	0	0	0	8354	986	34	4		4	KIF1B	1	10342421	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2342282	10342421	238908200	7	42091											
KIF1B	23095	broad.mit.edu	37	chr1	10385930	10385930	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctaggatggtctactcacGtgtttcctttgcttttctta	7	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10385930	A	A	10385930	1	1	26	0	1	0	0	0	0	0	0	0	8354	1160	40	4		4	KIF1B	1	10385930	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	43509	10385930	238864691	8	42092											
TNFRSF8	943	broad.mit.edu	37	chr1	12195760	12195760	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagttttgagagctgctggGggaagggagagggaggggac	22	3	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12195760	C	C	12195760	1	2	26	0	1	0	0	0	0	0	0	0	16422	1247	43	4		4	TNFRSF8	1	12195760	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1809830	12195760	237054861	9	42093											
C1orf158	93190	broad.mit.edu	37	chr1	12819157	12819157	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatcagcaccacagacccCtacatgtggcagctcctgtc	7	17	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12819157	T	T	12819157	1	4	26	0	1	0	0	0	0	0	0	0	2027	696	24	4		4	C1orf158	1	12819157	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	623397	12819157	236431464	10	42094											
PRDM2	7799	broad.mit.edu	37	chr1	14107413	14107413	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcccgtggagcccctgatGtctgccgcctcacccgggcc	11	20	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14107413	A	A	14107413	3	1	26	1	0	0	0	0	1	0	0	0	12564	1377	48	4	3149	4	PRDM2	1	14107413	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1288256	14107413	235143208	11	42095											
KAZ	23254	broad.mit.edu	37	chr1	15390181	15390181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttgactacaacttcacCctctgttcccctgagcccac	4	19	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15390181	A	A	15390181	1	1	26	0	1	0	0	0	0	0	0	0	8058	638	22	2		2	KAZ	1	15390181	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1282768	15390181	233860440	12	42096											
DNAJC16	23341	broad.mit.edu	37	chr1	15888820	15888820	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtttcaagggaaatcagcGgtaagccacagagtctctcc	11	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15888820	A	A	15888820	2	1	26	1	0	0	0	0	0	0	0	1	4675	1130	39	4		4	DNAJC16	1	15888820	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	498639	15888820	233361801	13	42097											
CLCNKB	1188	broad.mit.edu	37	chr1	16374726	16374726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccatctgaggacggccGtgggggcttgggagatggag	19	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16374726	T	T	16374726	1	4	26	0	1	0	0	0	0	0	0	0	3501	1160	40	3		3	CLCNKB	1	16374726	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	485906	16374726	232875895	14	42098											
NECAP2	55707	broad.mit.edu	37	chr1	16767140	16767140	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgcacaaacgaggcggtgcTgaggcccgcgagctgccgct	16	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16767140	A	A	16767140	1	1	26	0	1	0	0	0	0	0	0	0	10403	1595	55	5		5	NECAP2	1	16767140	5'Flank	SNP	T	TCGA-05-4432-01A-01D-1265-08	392414	16767140	232483481	15	42099											
NBPF1	55672	broad.mit.edu	37	chr1	16893022	16893022	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacacataacaatccactgtCtaatcctcacgcagggactt	5	14	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16893022	G	G	16893022	1	3	26	0	1	0	0	0	0	0	0	0	10286	928	32	4		4	NBPF1	1	16893022	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	125882	16893022	232357599	16	42100											
CROCC	9696	broad.mit.edu	37	chr1	17183671	17183671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtatcccagctggaggccCagctcccaaaaaattgacta	9	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17183671	A	A	17183671	1	1	26	0	1	0	0	0	0	0	0	0	3925	609	21	2		2	CROCC	1	17183671	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	290649	17183671	232066950	17	42101											
CROCC	9696	broad.mit.edu	37	chr1	17279852	17279852	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgcagagtcagctgcAgcgtgagcaggaggagctgc	16	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17279852	G	G	17279852	3	3	26	1	0	0	0	0	1	0	0	0	3925	188	7	5	3144	5	CROCC	1	17279852	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	96181	17279852	231970769	18	42102											
PADI6	353238	broad.mit.edu	37	chr1	17714922	17714922	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggggcccgaccagcaCgcctataccttggccctcct	11	17	0	0	rs113151411		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17714922	G	G	17714922	3	3	26	1	0	0	0	0	1	0	0	0	11475	535	19	4	752	4	PADI6	1	17714922	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	435070	17714922	231535699	19	42103											
PLA2G2F	64600	broad.mit.edu	37	chr1	20474888	20474888	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccccagcgccccccgccccTccctagagcctctgaggttt	8	21	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20474888	A	A	20474888	2	1	26	1	0	0	0	0	0	0	0	1	12094	1538	54	5		5	PLA2G2F	1	20474888	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	2759966	20474888	228775733	20	42104											
KIF17	57576	broad.mit.edu	37	chr1	21009182	21009182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcagcttgctcttggcCcgcacttcctcctggatgga	10	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21009182	A	A	21009182	2	1	26	1	0	0	0	0	0	0	0	1	8349	610	22	2		2	KIF17	1	21009182	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	534294	21009182	228241439	21	42105											
HP1BP3	50809	broad.mit.edu	37	chr1	21071530	21071530	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgcaggtttggaccctctCtgcttcacagatgcggcctt	12	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21071530	A	A	21071530	3	1	26	1	0	0	0	0	1	0	0	0	7395	912	32	3	243	3	HP1BP3	1	21071530	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	62348	21071530	228179091	22	42106											
EPHA8	2046	broad.mit.edu	37	chr1	22915542	22915542	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcggcacccgctttgtGccccagcagacaagcctggt	14	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22915542	T	T	22915542	2	4	26	1	0	0	0	0	0	0	0	1	5215	1306	46	3		3	EPHA8	1	22915542	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1844012	22915542	226335079	23	42107											
SLC30A2	7780	broad.mit.edu	37	chr1	26371545	26371545	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggctacatacagctggcGctgggccttccccttcttgg	12	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26371545	A	A	26371545	3	1	26	1	0	0	0	0	1	0	0	0	14669	1087	38	4	932	4	SLC30A2	1	26371545	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3456003	26371545	222879076	24	42108											
CNKSR1	10256	broad.mit.edu	37	chr1	26509068	26509068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagcaggtgcagctggacaGtccattggtgagccctgccc	14	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26509068	T	T	26509068	3	4	26	1	0	0	0	0	1	0	0	0	3638	1029	36	3	639	3	CNKSR1	1	26509068	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	137523	26509068	222741553	25	42109											
WASF2	10163	broad.mit.edu	37	chr1	27741613	27741613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attactgggtttgaagtgacCcagaggccatctaatccaaa	9	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27741613	A	A	27741613	1	1	26	0	1	0	0	0	0	0	0	0	17380	638	22	2		2	WASF2	1	27741613	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1232545	27741613	221509008	26	42110											
SMPDL3B	27293	broad.mit.edu	37	chr1	28279969	28279969	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataagtactgattttatccCcaatttacagataaggaagc	6	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28279969	T	T	28279969	1	4	26	0	1	0	0	0	0	0	0	0	14923	638	22	4		4	SMPDL3B	1	28279969	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	538356	28279969	220970652	27	42111											
SFRS4	6429	broad.mit.edu	37	chr1	29481429	29481429	+	Intron	DEL	A	-	-													tgacgcatataatcctgaagAaaaaaaaaagtgtgactaca					rs66504457		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29481429	-	-	29481429	6	5	26	0	1	1	0	1	0	0	0	0	14292	261	9	0		0	SFRS4	1	29481429	Intron	DEL	A	TCGA-05-4432-01A-01D-1265-08	1201460	29481429	219769192	28	42112											
PTPRU	10076	broad.mit.edu	37	chr1	29618378	29618378	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctcaacccccctctcCaggaagccggtgaacatgac	7	19	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29618378	T	T	29618378	1	4	26	0	1	0	0	0	0	0	0	0	12921	609	21	4		4	PTPRU	1	29618378	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	136949	29618378	219632243	29	42113											
COL16A1	1307	broad.mit.edu	37	chr1	32130907	32130907	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccttctttattcttcctGtgcatgatgcactgttgtta	6	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32130907	C	C	32130907	1	2	26	0	1	0	0	0	0	0	0	0	3705	1392	48	4		4	COL16A1	1	32130907	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2512529	32130907	217119714	30	42114											
GJB4	127534	broad.mit.edu	37	chr1	35227242	35227242	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcggggcggactgtggtgGacgtacttgctgagcctcat	16	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35227242	A	A	35227242	4	1	26	1	0	0	0	0	0	1	0	0	6474	1183	41	4	389	4	GJB4	1	35227242	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3096335	35227242	214023379	31	42115											
GRIK3	2899	broad.mit.edu	37	chr1	37356618	37356619	+	Frame_Shift_Ins	INS	-	A	A													tcctgttcctgttgatgatgINSttggcagaaaatcgaaaggc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37356619	A	A	37356618	7	5	26	1	0	1	1	0	0	0	0	0	6841	1368	48	0	2624	0	GRIK3	1	37356618	Frame_Shift_Ins	INS	-	TCGA-05-4432-01A-01D-1265-08	2129376	37356618	211894003	32	42116											
MACF1	23499	broad.mit.edu	37	chr1	39781942	39781942	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaccctgtcaacatctAaaaatggtgacattgatttt	5	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39781942	G	G	39781942	1	3	26	0	1	0	0	0	0	0	0	0	9232	377	13	5		5	MACF1	1	39781942	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2425324	39781942	209468679	33	42117											
HIVEP3	59269	broad.mit.edu	37	chr1	41978593	41978593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcctgggccatgctccCccgctgaggggctgcccggc	14	18	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41978593	A	A	41978593	3	1	26	1	0	0	0	0	1	0	0	0	7255	623	22	2	929	2	HIVEP3	1	41978593	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2196651	41978593	207272028	34	42118											
ST3GAL3	6487	broad.mit.edu	37	chr1	44386499	44386499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaccatggcactacacGgctgtgacgaggtggcagtc	14	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44386499	T	T	44386499	3	4	26	1	0	0	0	0	1	0	0	0	15334	1116	39	1	1186	1	ST3GAL3	1	44386499	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2407906	44386499	204864122	35	42119											
CYP4B1	1580	broad.mit.edu	37	chr1	47279694	47279694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctcaccccacatggccGccgcttcctgcgggcctgcc	11	20	1	0	rs139993247	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47279694	T	T	47279694	3	4	26	1	0	0	0	0	1	0	0	0	4218	1087	38	3	756	3	CYP4B1	1	47279694	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2893195	47279694	201970927	36	42120											
FOXD2	2306	broad.mit.edu	37	chr1	47904171	47904171	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcggggggcgcggcgacgCggagcccgctggtgaagccg	21	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47904171	T	T	47904171	3	4	26	1	0	0	0	0	1	0	0	0	6055	759	27	4	366	4	FOXD2	1	47904171	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	624477	47904171	201346450	37	42121											
C1orf141	400757	broad.mit.edu	37	chr1	67591503	67591503	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgccttagacgcggatgtAgcaagagcttcttcaaattc	9	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67591503	T	T	67591503	2	4	26	1	0	0	0	0	0	0	0	1	2021	407	15	5		5	C1orf141	1	67591503	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	19687332	67591503	181659118	38	42122											
LRRC7	57554	broad.mit.edu	37	chr1	70397085	70397085	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagtacccccagttttgTgtactacgcaatcaggtaaa	9	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70397085	C	C	70397085	1	2	26	0	1	0	0	0	0	0	0	0	9107	1711	59	5		5	LRRC7	1	70397085	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2805582	70397085	178853536	39	42123											
LRRC7	57554	broad.mit.edu	37	chr1	70397309	70397309	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaggagattctttctttTgctctgtctttgtaaaccaa	6	9	5	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70397309	G	G	70397309	1	3	26	0	1	0	0	0	0	0	0	0	9107	1827	63	5		5	LRRC7	1	70397309	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	224	70397309	178853312	40	42124											
NEGR1	257194	broad.mit.edu	37	chr1	72740197	72740197	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gataaactgtctcaagttgtCtgtatcggtatcccaatgtt	8	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72740197	T	T	72740197	1	4	26	0	1	0	0	0	0	0	0	0	10412	928	32	4		4	NEGR1	1	72740197	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2342888	72740197	176510424	41	42125											
LRRIQ3	127255	broad.mit.edu	37	chr1	74648512	74648512	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagttttaggttcttcaatcCattccaaaatttggtatttg	6	6	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74648512	G	G	74648512	3	3	26	1	0	0	0	0	1	0	0	0	9117	603	21	4	1615	4	LRRIQ3	1	74648512	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1908315	74648512	174602109	42	42126											
C1orf173	127254	broad.mit.edu	37	chr1	75037858	75037858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcttcactcagtctttccCctcctccttctttcctcaga	4	17	5	1	rs76571187		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037858	A	A	75037858	3	1	26	1	0	0	0	0	1	0	0	0	2034	623	22	2	1060	2	C1orf173	1	75037858	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	389346	75037858	174212763	43	42127											
C1orf173	127254	broad.mit.edu	37	chr1	75107077	75107077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccacgattactctttgGgccaactggtgggtggggag	16	8	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75107077	T	T	75107077	3	4	26	1	0	0	0	0	1	0	0	0	2034	1232	43	2	4250	2	C1orf173	1	75107077	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	69219	75107077	174143544	44	42128											
LHX8	431707	broad.mit.edu	37	chr1	75608902	75608902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcacttggcatgctttgcCtgcttttcctgcaaaaggca	8	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75608902	A	A	75608902	2	1	26	1	0	0	0	0	0	0	0	1	8848	668	24	2		2	LHX8	1	75608902	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	501825	75608902	173641719	45	42129											
SLC44A5	204962	broad.mit.edu	37	chr1	75681537	75681537	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatttagacaatgtgttctGggtacctatgagaaggagat	12	4	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75681537	C	C	75681537	3	2	26	1	0	0	0	0	1	0	0	0	14753	1357	47	4	664	4	SLC44A5	1	75681537	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	72635	75681537	173569084	46	42130											
MSH4	4438	broad.mit.edu	37	chr1	76355032	76355032	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcgaaacaaattcatcaaCatttatgaaagaaatgaaag	5	5	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76355032	T	T	76355032	3	4	26	1	0	0	0	0	1	0	0	0	9966	478	17	4	2266	4	MSH4	1	76355032	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	673495	76355032	172895589	47	42131											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76771578	76771578	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaatggtaaagatgacttGaactctgatattctgcctct	8	7	3	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76771578	A	A	76771578	1	1	26	0	1	0	0	0	0	0	0	0	15343	1305	45	4		4	ST6GALNAC3	1	76771578	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	416546	76771578	172479043	48	42132											
ZZZ3	26009	broad.mit.edu	37	chr1	78098720	78098720	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaacaggttctgtttgcCttctctcacaattttctata	6	9	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78098720	T	T	78098720	3	4	26	1	0	0	0	0	1	0	0	0	18385	681	24	4	2435	4	ZZZ3	1	78098720	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1327142	78098720	171151901	49	42133											
FUBP1	8880	broad.mit.edu	37	chr1	78425982	78425982	+	Intron	DEL	A	-	-													tcagcataaaaaacagtcccAaaactagaatctttggggaa							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78425982	-	-	78425982	6	5	26	0	1	1	0	1	0	0	0	0	6152	145	5	0		0	FUBP1	1	78425982	Intron	DEL	A	TCGA-05-4432-01A-01D-1265-08	327262	78425982	170824639	50	42134											
LPHN2	23266	broad.mit.edu	37	chr1	81892406	81892406	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactcttgtgttgaagaggtGgatgcaacaacatgtgctca	11	7	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81892406	C	C	81892406	1	2	26	0	1	0	0	0	0	0	0	0	9003	1363	47	4		4	LPHN2	1	81892406	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3466424	81892406	167358215	51	42135											
LPHN2	23266	broad.mit.edu	37	chr1	82450531	82450531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgcttttttagtattttGgtttcaatgtcttcttaaac	5	6	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82450531	T	T	82450531	1	4	26	0	1	0	0	0	0	0	0	0	9003	1363	47	2		2	LPHN2	1	82450531	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	558125	82450531	166800090	52	42136											
LPAR3	23566	broad.mit.edu	37	chr1	85331262	85331262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaactcctgctgtaaatgGgggccagggaagagcaggca	16	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85331262	T	T	85331262	3	4	26	1	0	0	0	0	1	0	0	0	8993	1232	43	2	527	2	LPAR3	1	85331262	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2880731	85331262	163919359	53	42137											
MCOLN2	255231	broad.mit.edu	37	chr1	85422308	85422308	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaccacatatgacctttTataactttgatcagaggtta	5	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85422308	A	A	85422308	1	1	26	0	1	0	0	0	0	0	0	0	9489	1769	61	5		5	MCOLN2	1	85422308	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	91046	85422308	163828313	54	42138											
ZNF326	284695	broad.mit.edu	37	chr1	90484244	90484244	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttctattttgttttctagGagtgtatggtgaataaattc	8	4	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90484244	T	T	90484244	4	4	26	1	0	0	0	0	0	1	0	0	17972	1188	41	3	1113	3	ZNF326	1	90484244	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	5061936	90484244	158766377	55	42139											
HFM1	164045	broad.mit.edu	37	chr1	91740287	91740287	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattaacattatatttgtacCttgatatactaggaagggaa	7	4	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91740287	G	G	91740287	3	3	26	1	0	0	0	0	1	0	0	0	7150	695	24	4	667	4	HFM1	1	91740287	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1256043	91740287	157510334	56	42140											
HFM1	164045	broad.mit.edu	37	chr1	91742226	91742226	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagatgaaacagcattccTgtttcttaaatcagataaat	5	7	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91742226	A	A	91742226	3	1	26	1	0	0	0	0	1	0	0	0	7150	1579	55	5	792	5	HFM1	1	91742226	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1939	91742226	157508395	57	42141											
BRDT	676	broad.mit.edu	37	chr1	92441976	92441976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcttcagtcaactccaGttcacaaactgcggcccaag	10	13	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92441976	T	T	92441976	3	4	26	1	0	0	0	0	1	0	0	0	1517	1029	36	3	613	3	BRDT	1	92441976	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	699750	92441976	156808645	58	42142											
VCAM1	7412	broad.mit.edu	37	chr1	101186345	101186345	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtttttctctcaattTtactttaaaatcacttttta	1	7	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101186345	C	C	101186345	1	2	26	0	1	0	0	0	0	0	0	0	17264	1856	64	5		5	VCAM1	1	101186345	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	8744369	101186345	148064276	59	42143											
COL11A1	1301	broad.mit.edu	37	chr1	103352648	103352648	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagtgcaattgtttcatAaagtggaatattctgcagat	10	4	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103352648	G	G	103352648	1	3	26	0	1	0	0	0	0	0	0	0	3699	377	13	5		5	COL11A1	1	103352648	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2166303	103352648	145897973	60	42144											
AMY1A	276	broad.mit.edu	37	chr1	104297220	104297220	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catggcgctggaggagcctcTatacttaccttctgggatgc	12	11	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104297220	C	C	104297220	2	2	26	1	0	0	0	0	0	0	0	1	591	1509	53	5		5	AMY1A	1	104297220	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	944572	104297220	144953401	61	42145											
VAV3	10451	broad.mit.edu	37	chr1	108303496	108303496	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattatttgctcttttggaAcattcctaatgaaatgtttt	5	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108303496	T	T	108303496	4	4	26	1	0	0	0	0	0	1	0	0	17260	41	2	5	1713	5	VAV3	1	108303496	Nonsense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	4006276	108303496	140947125	62	42146											
KIAA1324	57535	broad.mit.edu	37	chr1	109735309	109735309	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgaatggtgtggcctcctActgccgtccctgtgccctag	11	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109735309	G	G	109735309	3	3	26	1	0	0	0	0	1	0	0	0	8293	391	14	5	1814	5	KIAA1324	1	109735309	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1431813	109735309	139515312	63	42147											
KIAA1324	57535	broad.mit.edu	37	chr1	109740147	109740147	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcactgacctccggattcctGagggtgagtcagggttctcc	12	12	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109740147	T	T	109740147	4	4	26	1	0	0	0	0	0	1	0	0	8293	1291	45	3	2235	3	KIAA1324	1	109740147	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4838	109740147	139510474	64	42148											
SYPL2	284612	broad.mit.edu	37	chr1	110018245	110018245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgtggctcctacagcGgggagacaggagcaatggtt	16	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110018245	T	T	110018245	3	4	26	1	0	0	0	0	1	0	0	0	15582	1116	39	1	182	1	SYPL2	1	110018245	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	278098	110018245	139232376	65	42149											
GPR61	83873	broad.mit.edu	37	chr1	110085968	110085968	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccctctttgaccacgcCctctttggggaggtggcctg	12	14	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110085968	A	A	110085968	2	1	26	1	0	0	0	0	0	0	0	1	6767	610	22	2		2	GPR61	1	110085968	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	67723	110085968	139164653	66	42150											
AMPD2	271	broad.mit.edu	37	chr1	110169246	110169246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgttcctgggggtcaggGcctgtgggaggtggggatag	22	5	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110169246	A	A	110169246	1	1	26	0	1	0	0	0	0	0	0	0	586	1218	42	4		4	AMPD2	1	110169246	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	83278	110169246	139081375	67	42151											
RBM15	64783	broad.mit.edu	37	chr1	110883749	110883749	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccacccttactatacagAgatcgtgatagggaccttta	7	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110883749	T	T	110883749	3	4	26	1	0	0	0	0	1	0	0	0	13224	301	11	5	1724	5	RBM15	1	110883749	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	714503	110883749	138366872	68	42152											
MOV10	4343	broad.mit.edu	37	chr1	113232654	113232654	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcccatgactcccttcaAgcggacccggatcaccggaa	10	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113232654	T	T	113232654	3	4	26	1	0	0	0	0	1	0	0	0	9812	72	3	5	784	5	MOV10	1	113232654	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	2348905	113232654	136017967	69	42153											
MOV10	4343	broad.mit.edu	37	chr1	113242307	113242307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctctttccccactagGtgggttcagtagaagaattc	9	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113242307	C	C	113242307	3	2	26	1	0	0	0	0	1	0	0	0	9812	1275	44	4	2650	4	MOV10	1	113242307	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	9653	113242307	136008314	70	42154											
FAM19A3	284467	broad.mit.edu	37	chr1	113264773	113264773	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatctttgtgcctcccagAgtgtgtggcacagagaaggt	12	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113264773	G	G	113264773	1	3	26	0	1	0	0	0	0	0	0	0	5580	319	11	5		5	FAM19A3	1	113264773	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	22466	113264773	135985848	71	42155											
MAGI3	260425	broad.mit.edu	37	chr1	114189213	114189213	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtcaggatccccaaaaTtggatccttctgaggtctac	9	11	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114189213	G	G	114189213	3	3	26	1	0	0	0	0	1	0	0	0	9284	1490	52	5	2150	5	MAGI3	1	114189213	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	924440	114189213	135061408	72	42156											
CASQ2	845	broad.mit.edu	37	chr1	116243770	116243770	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaaaggagctggctggGtgtggggcagaattgcttgc	19	5	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116243770	T	T	116243770	1	4	26	0	1	0	0	0	0	0	0	0	2707	1276	44	3		3	CASQ2	1	116243770	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	2054557	116243770	133006851	73	42157											
IGSF3	3321	broad.mit.edu	37	chr1	117120124	117120124	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccaaagatggggaaagggTagaagaagacgaagtagaag	16	3	0	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117120124	A	A	117120124	3	1	26	1	0	0	0	0	1	0	0	0	7671	1638	57	5	193	5	IGSF3	1	117120124	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	876354	117120124	132130497	74	42158											
HSD3B2	3284	broad.mit.edu	37	chr1	119987983	119987983	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctccagttagccgggccCaactcctacaaggaaatcat	7	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119987983	A	A	119987983	1	1	26	0	1	0	0	0	0	0	0	0	7458	609	21	2		2	HSD3B2	1	119987983	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	2867859	119987983	129262638	75	42159											
FMO5	2330	broad.mit.edu	37	chr1	146685225	146685225	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaaaatttccacaagacaGaaaaaaataacatagtgttg	7	5	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146685225	A	A	146685225	1	1	26	0	1	0	0	0	0	0	0	0	6016	957	33	4		4	FMO5	1	146685225	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	26697242	146685225	102565396	76	42160											
SV2A	9900	broad.mit.edu	37	chr1	149881030	149881030	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctgcccccctaggctcaAggcccggaccccccagcgct	9	21	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149881030	G	G	149881030	2	3	26	1	0	0	0	0	0	0	0	1	15535	69	3	5		5	SV2A	1	149881030	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	3195805	149881030	99369591	77	42161											
TUFT1	7286	broad.mit.edu	37	chr1	151554081	151554081	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggccacaacacagctGttcccagcacaactcagtgt	11	13	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151554081	C	C	151554081	1	2	26	0	1	0	0	0	0	0	0	0	16898	1392	48	4		4	TUFT1	1	151554081	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1673051	151554081	97696540	78	42162											
SLC27A3	11000	broad.mit.edu	37	chr1	153749049	153749049	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagagccatggggctccaCctgtgggctgcaggcccagg	16	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153749049	G	G	153749049	3	3	26	1	0	0	0	0	1	0	0	0	14641	506	18	4	870	4	SLC27A3	1	153749049	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2194968	153749049	95501572	79	42163											
ATP8B2	57198	broad.mit.edu	37	chr1	154317940	154317940	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacctgcgaatgtgcaagttTctttgctatttcttctacaa	6	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154317940	A	A	154317940	3	1	26	1	0	0	0	0	1	0	0	0	1199	1780	62	5	2932	5	ATP8B2	1	154317940	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	568891	154317940	94932681	80	42164											
FAM189B	10712	broad.mit.edu	37	chr1	155223710	155223710	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaactttcagttcctgcccCgactctggacagggccggag	12	14	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155223710	T	T	155223710	2	4	26	1	0	0	0	0	0	0	0	1	5564	639	23	4		4	FAM189B	1	155223710	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	905770	155223710	94026911	81	42165											
FAM189B	10712	broad.mit.edu	37	chr1	155223798	155223798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagggagggtgaggcagcCtgagtcaggacaaactgagg	18	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155223798	A	A	155223798	1	1	26	0	1	0	0	0	0	0	0	0	5564	696	24	2		2	FAM189B	1	155223798	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	88	155223798	94026823	82	42166											
RUSC1	23623	broad.mit.edu	37	chr1	155298032	155298032	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccttctcctcaggagcttGaggcctcagcacccaggatg	11	14	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155298032	C	C	155298032	3	2	26	1	0	0	0	0	1	0	0	0	13861	1291	45	4	2667	4	RUSC1	1	155298032	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	74234	155298032	93952589	83	42167											
DAP3	7818	broad.mit.edu	37	chr1	155701746	155701746	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctttcagcatggaggcgcCattgtgtcggctttgagcca	12	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155701746	G	G	155701746	2	3	26	1	0	0	0	0	0	0	0	1	4267	581	21	4		4	DAP3	1	155701746	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	403714	155701746	93548875	84	42168											
RHBG	57127	broad.mit.edu	37	chr1	156351938	156351938	+	Frame_Shift_Del	DEL	C	-	-													gatgccgggggtcctgggggCcctcctgggggtccttgtgg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156351938	-	-	156351938	7	5	26	1	0	1	0	1	0	0	0	0	13433	739	26	0	1084	0	RHBG	1	156351938	Frame_Shift_Del	DEL	C	TCGA-05-4432-01A-01D-1265-08	650192	156351938	92898683	85	42169											
IQGAP3	128239	broad.mit.edu	37	chr1	156501027	156501027	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtatgatatcggccaaCagctgcttggtgctgcacaa	10	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156501027	A	A	156501027	2	1	26	1	0	0	0	0	0	0	0	1	7886	465	17	3		3	IQGAP3	1	156501027	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	149089	156501027	92749594	86	42170											
IQGAP3	128239	broad.mit.edu	37	chr1	156504072	156504072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcttctgccctctgtcCtgccctacctctgtcccagt	6	19	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156504072	A	A	156504072	1	1	26	0	1	0	0	0	0	0	0	0	7886	696	24	2		2	IQGAP3	1	156504072	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3045	156504072	92746549	87	42171											
IQGAP3	128239	broad.mit.edu	37	chr1	156504889	156504889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtttttgtctcagtctGgggattgcaggtaccagcaa	12	7	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156504889	T	T	156504889	1	4	26	0	1	0	0	0	0	0	0	0	7886	1363	47	2		2	IQGAP3	1	156504889	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	817	156504889	92745732	88	42172											
FCRL5	83416	broad.mit.edu	37	chr1	157485511	157485512	+	Missense_Mutation	DNP	GG	TT	TT													agaacagggatccggaaaccGgggttgacgccaccttaact					rs140845798	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	157485512	TT	TT	157485511	3	4	26	1	0	0	0	0	1	0	0	0	5855	1116	39	1	49	1	FCRL5	1	157485511	Missense_Mutation	DNP	GG	TCGA-05-4432-01A-01D-1265-08	980622	157485511	91765110	89	42173											
CD1E	913	broad.mit.edu	37	chr1	158326777	158326777	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgcttttatttaaacaGtttatactagcaaagatact	5	6	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158326777	T	T	158326777	1	4	26	0	1	0	0	0	0	0	0	0	3008	1044	36	3		3	CD1E	1	158326777	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	841266	158326777	90923844	90	42174											
OR10T2	128360	broad.mit.edu	37	chr1	158368475	158368475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagacttggacttgggcCgcagatagatgatagaggca	15	7	0	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158368475	A	A	158368475	3	1	26	1	0	0	0	0	1	0	0	0	11013	652	23	1	164	1	OR10T2	1	158368475	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	41698	158368475	90882146	91	42175											
SPTA1	6708	broad.mit.edu	37	chr1	158609311	158609311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtctcctaacatgggaGggagaagagccagaaatatt	12	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158609311	T	T	158609311	1	4	26	0	1	0	0	0	0	0	0	0	15234	1015	35	2		2	SPTA1	1	158609311	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	240836	158609311	90641310	92	42176											
OR6K3	391114	broad.mit.edu	37	chr1	158687103	158687103	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaatggctgtgtccaaaActggtggataagtgtcgctg	14	7	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158687103	G	G	158687103	3	3	26	1	0	0	0	0	1	0	0	0	11297	43	2	5	146	5	OR6K3	1	158687103	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	77792	158687103	90563518	93	42177											
CADM3	57863	broad.mit.edu	37	chr1	159162341	159162341	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtgccagtaaaatcctAgctttccattctcttgattt	6	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159162341	T	T	159162341	1	4	26	0	1	0	0	0	0	0	0	0	2594	435	15	5		5	CADM3	1	159162341	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	475238	159162341	90088280	94	42178											
CADM3	57863	broad.mit.edu	37	chr1	159166690	159166690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctcgacagcccccagcaGtacctatgggagaaggaggg	14	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159166690	T	T	159166690	3	4	26	1	0	0	0	0	1	0	0	0	2594	1020	36	3	924	3	CADM3	1	159166690	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4349	159166690	90083931	95	42179											
DARC	2532	broad.mit.edu	37	chr1	159175860	159175860	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctttgcaggccacacacActgtagcctgtcttgccatc	9	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159175860	T	T	159175860	3	4	26	1	0	0	0	0	1	0	0	0	4273	159	6	5	664	5	DARC	1	159175860	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	9170	159175860	90074761	96	42180											
IGSF9	57549	broad.mit.edu	37	chr1	159907588	159907588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcttccacccggagaccCtcaatctggagagaggcccc	11	15	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159907588	A	A	159907588	3	1	26	1	0	0	0	0	1	0	0	0	7675	680	24	2	3323	2	IGSF9	1	159907588	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	731728	159907588	89343033	97	42181											
DCAF8	50717	broad.mit.edu	37	chr1	160194778	160194778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgagcactggagggcaCatgcctcactggctcagcag	15	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160194778	A	A	160194778	1	1	26	0	1	0	0	0	0	0	0	0	4309	493	17	3		3	DCAF8	1	160194778	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	287190	160194778	89055843	98	42182											
NHLH1	4807	broad.mit.edu	37	chr1	160340530	160340530	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggcttccatcatgatgctCaactcagacaccatggagct	10	12	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160340530	T	T	160340530	2	4	26	1	0	0	0	0	0	0	0	1	10498	813	29	4		4	NHLH1	1	160340530	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	145752	160340530	88910091	99	42183											
CD84	8832	broad.mit.edu	37	chr1	160523869	160523869	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctctacagagcatgtcagTgtgacattacaggtgctgtt	10	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160523869	A	A	160523869	2	1	26	1	0	0	0	0	0	0	0	1	3072	1683	59	5		5	CD84	1	160523869	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	183339	160523869	88726752	100	42184											
CD244	51744	broad.mit.edu	37	chr1	160808796	160808796	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggtgccaaggaacagtgcGcttagaatcacgatgatcac	12	9	2	2	rs34984882	byFrequency;by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160808796	C	C	160808796	3	2	26	1	0	0	0	0	1	0	0	0	3017	1078	38	4	422	4	CD244	1	160808796	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	284927	160808796	88441825	101	42185											
FCRLB	127943	broad.mit.edu	37	chr1	161692734	161692734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctctctcctctcatcgcCaatattctccttctccttcc	2	18	5	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161692734	A	A	161692734	1	1	26	0	1	0	0	0	0	0	0	0	5858	609	21	2		2	FCRLB	1	161692734	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	883938	161692734	87557887	102	42186											
ATF6	22926	broad.mit.edu	37	chr1	161816433	161816433	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagctgaaacaagagaattAtctgtagtataacattgcat	8	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161816433	G	G	161816433	1	3	26	0	1	0	0	0	0	0	0	0	1088	464	16	5		5	ATF6	1	161816433	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	123699	161816433	87434188	103	42187											
OLFML2B	25903	broad.mit.edu	37	chr1	161967727	161967727	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtctgttctgactgtggtGggaggcactgggactgtgtg	18	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161967727	A	A	161967727	2	1	26	1	0	0	0	0	0	0	0	1	10953	1335	47	4		4	OLFML2B	1	161967727	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	151294	161967727	87282894	104	42188											
OLFML2B	25903	broad.mit.edu	37	chr1	161987177	161987177	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaaagatatagaaaccaGaatcttccttacctcctcca	4	11	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161987177	T	T	161987177	1	4	26	0	1	0	0	0	0	0	0	0	10953	957	33	3		3	OLFML2B	1	161987177	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	19450	161987177	87263444	105	42189											
ALDH9A1	223	broad.mit.edu	37	chr1	165638720	165638720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagacatcaatttctatGtgtgtaaggagaaaaaaggg	10	5	2	2	rs112550701		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165638720	T	T	165638720	1	4	26	0	1	0	0	0	0	0	0	0	506	1392	48	3		3	ALDH9A1	1	165638720	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3651543	165638720	83611901	106	42190											
TADA1	117143	broad.mit.edu	37	chr1	166838565	166838565	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatctacctaataaaacttTtcttctgagtagttcaaaaa	4	7	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166838565	C	C	166838565	1	2	26	0	1	0	0	0	0	0	0	0	15628	1856	64	5		5	TADA1	1	166838565	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1199845	166838565	82412056	107	42191											
ILDR2	387597	broad.mit.edu	37	chr1	166892081	166892081	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcatgatagagcttttTgtgttactctgttttagaca	9	6	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166892081	G	G	166892081	1	3	26	0	1	0	0	0	0	0	0	0	7780	1827	63	5		5	ILDR2	1	166892081	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	53516	166892081	82358540	108	42192											
MAEL	84944	broad.mit.edu	37	chr1	166991137	166991137	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacagtaacaggcccaacTtccttcttactacagtcata	4	12	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166991137	A	A	166991137	1	1	26	0	1	0	0	0	0	0	0	0	9242	1624	56	5		5	MAEL	1	166991137	3'UTR	SNP	T	TCGA-05-4432-01A-01D-1265-08	99056	166991137	82259484	109	42193											
DUSP27	92235	broad.mit.edu	37	chr1	167095983	167095983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttctgcagcaggaacaagGacaagctcactgccctggaa	10	12	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167095983	T	T	167095983	3	4	26	1	0	0	0	0	1	0	0	0	4864	1174	41	3	1633	3	DUSP27	1	167095983	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	104846	167095983	82154638	110	42194											
DPT	1805	broad.mit.edu	37	chr1	168670163	168670163	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtgtgtgtgtgtgtgtGtgtttataaattcctgcagg	16	3	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168670163	A	A	168670163	1	1	26	0	1	0	0	0	0	0	0	0	4779	1392	48	4		4	DPT	1	168670163	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1574180	168670163	80580458	111	42195											
F5	2153	broad.mit.edu	37	chr1	169484771	169484771	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagctctttacatacatttCagaggacagagacttgcagc	8	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169484771	G	G	169484771	3	3	26	1	0	0	0	0	1	0	0	0	5391	835	29	4	243	4	F5	1	169484771	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	814608	169484771	79765850	112	42196											
F5	2153	broad.mit.edu	37	chr1	169515796	169515796	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgttctcatcaaacacaGcaaacacagcctgctgttcg	6	12	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169515796	A	A	169515796	3	1	26	1	0	0	0	0	1	0	0	0	5391	971	34	4	5088	4	F5	1	169515796	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	31025	169515796	79734825	113	42197											
FMO1	2326	broad.mit.edu	37	chr1	171227364	171227364	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggagattcaccgtaagTggggtttcaacaactttatc	10	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171227364	A	A	171227364	1	1	26	0	1	0	0	0	0	0	0	0	6012	1711	59	5		5	FMO1	1	171227364	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1711568	171227364	78023257	114	42198											
BAT2L2	23215	broad.mit.edu	37	chr1	171561144	171561144	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagcaatttacactgacaCacagctgctgtaccagtgaa	9	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171561144	T	T	171561144	1	4	26	0	1	0	0	0	0	0	0	0	1326	493	17	4		4	BAT2L2	1	171561144	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	333780	171561144	77689477	115	42199											
KLHL20	27252	broad.mit.edu	37	chr1	173735509	173735509	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaactacaggttgggCgtggtggctcacacctgtaa	12	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173735509	T	T	173735509	1	4	26	0	1	0	0	0	0	0	0	0	8446	783	27	4		4	KLHL20	1	173735509	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2174365	173735509	75515112	116	42200											
TNR	7143	broad.mit.edu	37	chr1	175372821	175372821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatggtgctggggaaggatGggcaaaggcctctctactca	14	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175372821	T	T	175372821	1	4	26	0	1	0	0	0	0	0	0	0	16461	1363	47	2		2	TNR	1	175372821	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1637312	175372821	73877800	117	42201											
TNR	7143	broad.mit.edu	37	chr1	175375870	175375870	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctctcagccagagatctgGgttcaggaccagcctgcagc	11	14	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175375870	C	C	175375870	1	2	26	0	1	0	0	0	0	0	0	0	16461	1247	43	4		4	TNR	1	175375870	5'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	3049	175375870	73874751	118	42202											
PAPPA2	60676	broad.mit.edu	37	chr1	176661380	176661380	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccccatccccattccaccTatggtcatcggacagaccaa	5	18	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176661380	C	C	176661380	2	2	26	1	0	0	0	0	0	0	0	1	11527	1509	53	5		5	PAPPA2	1	176661380	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	1285510	176661380	72589241	119	42203											
ASTN1	460	broad.mit.edu	37	chr1	176851967	176851967	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggactgtcagggtaagaAgtcactaggtaggtgtgtgt	16	4	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176851967	T	T	176851967	1	4	26	0	1	0	0	0	0	0	0	0	1068	87	3	5		5	ASTN1	1	176851967	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	190587	176851967	72398654	120	42204											
FAM5B	57795	broad.mit.edu	37	chr1	177249519	177249519	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtgtgacttcttttgactCttacttcattttatctctgc	6	9	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177249519	A	A	177249519	1	1	26	0	1	0	0	0	0	0	0	0	5644	928	32	3		3	FAM5B	1	177249519	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	397552	177249519	72001102	121	42205											
RASAL2	9462	broad.mit.edu	37	chr1	178426890	178426890	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggaaaacattattgctGgttcagcaagcctcctctca	9	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178426890	T	T	178426890	2	4	26	1	0	0	0	0	0	0	0	1	13172	1335	47	2		2	RASAL2	1	178426890	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1177371	178426890	70823731	122	42206											
TOR1AIP1	26092	broad.mit.edu	37	chr1	179887338	179887338	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacttagttctgcctgtgcaAcctgaaaatgccctgaaaag	8	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179887338	T	T	179887338	3	4	26	1	0	0	0	0	1	0	0	0	16496	40	2	5	1754	5	TOR1AIP1	1	179887338	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1460448	179887338	69363283	123	42207											
LHX4	89884	broad.mit.edu	37	chr1	180243566	180243566	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtaatttgggcatcattgCgcatgcagggcagggagtaa	14	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180243566	G	G	180243566	3	3	26	1	0	0	0	0	1	0	0	0	8845	768	27	4	1047	4	LHX4	1	180243566	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	356228	180243566	69007055	124	42208											
CACNA1E	777	broad.mit.edu	37	chr1	181707571	181707571	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggttataaaggtaaaaacTtctagagaaaacctgggctc	9	6	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181707571	G	G	181707571	1	3	26	0	1	0	0	0	0	0	0	0	2568	1624	56	5		5	CACNA1E	1	181707571	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1464005	181707571	67543050	125	42209											
CACNA1E	777	broad.mit.edu	37	chr1	181714587	181714587	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcagggaacactgccccatCcacacggtaaccaacaacca	6	16	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181714587	T	T	181714587	1	4	26	0	1	0	0	0	0	0	0	0	2568	870	30	4		4	CACNA1E	1	181714587	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	7016	181714587	67536034	126	42210											
CACNA1E	777	broad.mit.edu	37	chr1	181741231	181741231	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgaggcctggcaggagaTtatgctgtcatgccttgggg	17	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181741231	C	C	181741231	3	2	26	1	0	0	0	0	1	0	0	0	2568	1493	52	5	5149	5	CACNA1E	1	181741231	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	26644	181741231	67509390	127	42211											
ZNF648	127665	broad.mit.edu	37	chr1	182025857	182025857	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggacagattggaggacttgGtgaagcacttgccgcaggtg	16	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182025857	A	A	182025857	3	1	26	1	0	0	0	0	1	0	0	0	18190	1261	44	4	421	4	ZNF648	1	182025857	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	284626	182025857	67224764	128	42212											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185268723	185268723	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatctccattgcatcaaaaGagatgactgcttctgaattc	6	9	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185268723	C	C	185268723	1	2	26	0	1	0	0	0	0	0	0	0	8000	957	33	4		4	IVNS1ABP	1	185268723	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3242866	185268723	63981898	129	42213											
HMCN1	83872	broad.mit.edu	37	chr1	186055284	186055284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaatcgttaactcagtcCtttagcagagtacagtggtt	9	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186055284	A	A	186055284	1	1	26	0	1	0	0	0	0	0	0	0	7287	696	24	2		2	HMCN1	1	186055284	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	786561	186055284	63195337	130	42214											
HMCN1	83872	broad.mit.edu	37	chr1	186114499	186114499	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaccacttctcattttaggGgctctgttttcatctcagat	7	10	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186114499	C	C	186114499	1	2	26	0	1	0	0	0	0	0	0	0	7287	1247	43	4		4	HMCN1	1	186114499	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	59215	186114499	63136122	131	42215											
PRG4	10216	broad.mit.edu	37	chr1	186270816	186270816	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaagtatgacaagtgctgtCccgattatgagagtttctgt	11	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186270816	G	G	186270816	3	3	26	1	0	0	0	0	1	0	0	0	12587	855	30	4	302	4	PRG4	1	186270816	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	156317	186270816	62979805	132	42216											
PLA2G4A	5321	broad.mit.edu	37	chr1	186909161	186909161	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaagttaatactgcacAatgccctttacctcttttca	5	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186909161	C	C	186909161	3	2	26	1	0	0	0	0	1	0	0	0	12096	130	5	5	1002	5	PLA2G4A	1	186909161	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	638345	186909161	62341460	133	42217											
FAM5C	339479	broad.mit.edu	37	chr1	190233997	190233997	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtaaactcattcttacctTtatggcagtggatgcaattt	8	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190233997	C	C	190233997	3	2	26	1	0	0	0	0	1	0	0	0	5645	1850	64	5	1704	5	FAM5C	1	190233997	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3324836	190233997	59016624	134	42218											
KCNT2	343450	broad.mit.edu	37	chr1	196309513	196309513	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggtaatctggaaggtcCatgataaaacgacctggaca	10	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196309513	A	A	196309513	4	1	26	1	0	0	0	0	0	1	0	0	8162	603	21	2	1718	2	KCNT2	1	196309513	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	6075516	196309513	52941108	135	42219											
ASPM	259266	broad.mit.edu	37	chr1	197072642	197072642	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaatctaaactgtttctgGgccttggccattctaaaagc	7	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197072642	A	A	197072642	2	1	26	1	0	0	0	0	0	0	0	1	1060	1219	43	4		4	ASPM	1	197072642	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	763129	197072642	52177979	136	42220											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200817337	200817337	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagccaataaatggagaAgaggaagcagagagcattga	12	5	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200817337	G	G	200817337	2	3	26	1	0	0	0	0	0	0	0	1	2638	69	3	5		5	CAMSAP1L1	1	200817337	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	3744695	200817337	48433284	137	42221											
C1orf106	55765	broad.mit.edu	37	chr1	200867635	200867635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctagtccctggtccctgGtccctggccctgactcctga	9	18	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200867635	T	T	200867635	1	4	26	0	1	0	0	0	0	0	0	0	2000	1276	44	3		3	C1orf106	1	200867635	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	50298	200867635	48382986	138	42222											
ADIPOR1	51094	broad.mit.edu	37	chr1	202920271	202920271	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcagccccagggggcagaGatctccctctgatggtagac	12	13	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202920271	A	A	202920271	1	1	26	0	1	0	0	0	0	0	0	0	318	957	33	4		4	ADIPOR1	1	202920271	5'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	2052636	202920271	46330350	139	42223											
MYBPH	4608	broad.mit.edu	37	chr1	203140496	203140496	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccccatgagacagcactgttCccctggctccataccaatca	6	17	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203140496	G	G	203140496	1	3	26	0	1	0	0	0	0	0	0	0	10108	870	30	4		4	MYBPH	1	203140496	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	220225	203140496	46110125	140	42224											
CHIT1	1118	broad.mit.edu	37	chr1	203185976	203185976	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggctgtagagtgatcctGggcccagcctcaaagctggg	15	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203185976	T	T	203185976	1	4	26	0	1	0	0	0	0	0	0	0	3377	1363	47	2		2	CHIT1	1	203185976	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	45480	203185976	46064645	141	42225											
ELK4	2005	broad.mit.edu	37	chr1	205589269	205589269	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagcaagactgaatcctggTctttaggctccagtgacaaa	9	10	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205589269	A	A	205589269	3	1	26	1	0	0	0	0	1	0	0	0	5103	1667	58	5	540	5	ELK4	1	205589269	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	2403293	205589269	43661352	142	42226											
SRGAP2	23380	broad.mit.edu	37	chr1	206566979	206566979	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctggctttggaggcaacCaatgcatctgtcttcaagta	10	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206566979	T	T	206566979	2	4	26	1	0	0	0	0	0	0	0	1	15264	581	21	4		4	SRGAP2	1	206566979	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	977710	206566979	42683642	143	42227											
SRGAP2	23380	broad.mit.edu	37	chr1	206567047	206567047	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtaagtgcttaaagccAagggcctgagggcacctctt	12	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206567047	G	G	206567047	1	3	26	0	1	0	0	0	0	0	0	0	15264	145	5	5		5	SRGAP2	1	206567047	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	68	206567047	42683574	144	42228											
CR1L	1379	broad.mit.edu	37	chr1	207890857	207890857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccttaatgggagacacacagGaactccccttggagatattc	9	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207890857	C	C	207890857	3	2	26	1	0	0	0	0	1	0	0	0	3873	1174	41	4	1505	4	CR1L	1	207890857	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1323810	207890857	41359764	145	42229											
HSD11B1	3290	broad.mit.edu	37	chr1	209878314	209878314	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatgaaaaaatatctcctCcccattctggggctcttcat	5	11	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209878314	A	A	209878314	2	1	26	1	0	0	0	0	0	0	0	1	7442	842	30	3		3	HSD11B1	1	209878314	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1987457	209878314	39372307	146	42230											
IRF6	3664	broad.mit.edu	37	chr1	209974608	209974608	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaatggtattttcctcttCttgttgagggctatgccggg	11	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209974608	T	T	209974608	3	4	26	1	0	0	0	0	1	0	0	0	7904	922	32	4	1280	4	IRF6	1	209974608	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	96294	209974608	39276013	147	42231											
KCNH1	3756	broad.mit.edu	37	chr1	211280526	211280526	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcaattcccgaatgcaGtaaaccattttctttttcca	5	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211280526	A	A	211280526	1	1	26	0	1	0	0	0	0	0	0	0	8101	1044	36	4		4	KCNH1	1	211280526	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1305918	211280526	37970095	148	42232											
NEK2	4751	broad.mit.edu	37	chr1	211844728	211844728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagataaaaacagaacCtcaaagtttttagcttatac	5	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211844728	A	A	211844728	1	1	26	0	1	0	0	0	0	0	0	0	10419	696	24	2		2	NEK2	1	211844728	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	564202	211844728	37405893	149	42233											
CENPF	1063	broad.mit.edu	37	chr1	214819878	214819878	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcagctctgtgtcttacAacaactgaaggaaagtgagc	11	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214819878	C	C	214819878	3	2	26	1	0	0	0	0	1	0	0	0	3261	130	5	5	7011	5	CENPF	1	214819878	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	2975150	214819878	34430743	150	42234											
KCNK2	3776	broad.mit.edu	37	chr1	215256635	215256635	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcggagcgcgcagccCgtctctgaataagaagtgag	14	11	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215256635	A	A	215256635	1	1	26	0	1	0	0	0	0	0	0	0	8136	667	23	1		1	KCNK2	1	215256635	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	436757	215256635	33993986	151	42235											
USH2A	7399	broad.mit.edu	37	chr1	216166438	216166438	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctttgggggctggcacGccttcgggtatgtcctcgtc	16	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216166438	A	A	216166438	2	1	26	1	0	0	0	0	0	0	0	1	17162	1074	38	4		4	USH2A	1	216166438	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	909803	216166438	33084183	152	42236											
USH2A	7399	broad.mit.edu	37	chr1	216221778	216221778	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtcatcaaattaggttGgggtttgccagcaaatggcc	11	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216221778	A	A	216221778	1	1	26	0	1	0	0	0	0	0	0	0	17162	1363	47	4		4	USH2A	1	216221778	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	55340	216221778	33028843	153	42237											
USH2A	7399	broad.mit.edu	37	chr1	216363548	216363548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacagatttttcatatcCattaaaacttgcttacctgc	5	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216363548	A	A	216363548	1	1	26	0	1	0	0	0	0	0	0	0	17162	609	21	2		2	USH2A	1	216363548	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	141770	216363548	32887073	154	42238											
USH2A	7399	broad.mit.edu	37	chr1	216424522	216424522	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttaggtacaagacagggaggGagggagaagaaaactaaatg	15	3	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216424522	A	A	216424522	1	1	26	0	1	0	0	0	0	0	0	0	17162	1189	41	4		4	USH2A	1	216424522	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	60974	216424522	32826099	155	42239											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220345290	220345290	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatgcccaacatgcgcagAcaacagagcggctccattgt	10	12	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220345290	T	T	220345290	3	4	26	1	0	0	0	0	1	0	0	0	13044	275	10	5	1715	5	RAB3GAP2	1	220345290	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3920768	220345290	28905331	156	42240											
DEGS1	8560	broad.mit.edu	37	chr1	224378005	224378005	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgatttccccaacattcctgGaaaaagtcttccactggtaa	6	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224378005	C	C	224378005	3	2	26	1	0	0	0	0	1	0	0	0	4462	1174	41	4	815	4	DEGS1	1	224378005	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4032715	224378005	24872616	157	42241											
PSEN2	5664	broad.mit.edu	37	chr1	227073239	227073239	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctttgccttctccctcagCatctacacgccattcactga	4	18	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227073239	T	T	227073239	2	4	26	1	0	0	0	0	0	0	0	1	12757	724	25	4		4	PSEN2	1	227073239	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2695234	227073239	22177382	158	42242											
JMJD4	65094	broad.mit.edu	37	chr1	227922419	227922419	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagcccgcctgtatgtactCtttccagtaggtgatgtagt	11	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227922419	A	A	227922419	4	1	26	1	0	0	0	0	0	1	0	0	8021	922	32	3	912	3	JMJD4	1	227922419	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	849180	227922419	21328202	159	42243											
GALNT2	2590	broad.mit.edu	37	chr1	230372547	230372547	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacataaagaagtgctttaGctcaaagagcaattaattgt	7	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230372547	A	A	230372547	1	1	26	0	1	0	0	0	0	0	0	0	6275	986	34	4		4	GALNT2	1	230372547	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2450128	230372547	18878074	160	42244											
SIPA1L2	57568	broad.mit.edu	37	chr1	232607141	232607141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacacattttcggtacatGgattatgcactttgactatg	7	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232607141	T	T	232607141	3	4	26	1	0	0	0	0	1	0	0	0	14443	1348	47	2	3013	2	SIPA1L2	1	232607141	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2234594	232607141	16643480	161	42245											
SIPA1L2	57568	broad.mit.edu	37	chr1	232626781	232626781	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtagagggtatagcatcttCtaaaattgctcctctcagtg	9	8	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232626781	G	G	232626781	3	3	26	1	0	0	0	0	1	0	0	0	14443	922	32	4	3599	4	SIPA1L2	1	232626781	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	19640	232626781	16623840	162	42246											
TARBP1	6894	broad.mit.edu	37	chr1	234563602	234563602	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacttagtttcaacataatCatgaacagtctaaaaactgt	4	7	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234563602	T	T	234563602	1	4	26	0	1	0	0	0	0	0	0	0	15674	841	29	4		4	TARBP1	1	234563602	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1936821	234563602	14687019	163	42247											
NID1	4811	broad.mit.edu	37	chr1	236187342	236187342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgcctgatttcccagcCccaacaagtcagaatcaaag	6	15	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236187342	A	A	236187342	1	1	26	0	1	0	0	0	0	0	0	0	10509	638	22	2		2	NID1	1	236187342	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1623740	236187342	13063279	164	42248											
EDARADD	128178	broad.mit.edu	37	chr1	236631557	236631557	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatggctttccagatagCactggagatcctcttccagg	10	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236631557	T	T	236631557	2	4	26	1	0	0	0	0	0	0	0	1	4946	709	25	4		4	EDARADD	1	236631557	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	444215	236631557	12619064	165	42249											
ACTN2	88	broad.mit.edu	37	chr1	236912564	236912564	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcattgaggagatccaGgtaatggaaccgcaactctg	11	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236912564	A	A	236912564	2	1	26	1	0	0	0	0	0	0	0	1	205	1014	35	4		4	ACTN2	1	236912564	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	281007	236912564	12338057	166	42250											
MTR	4548	broad.mit.edu	37	chr1	236992742	236992742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgtttttccagggctGgggcaagatgacgtcaactt	11	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236992742	T	T	236992742	1	4	26	0	1	0	0	0	0	0	0	0	10052	1363	47	2		2	MTR	1	236992742	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	80178	236992742	12257879	167	42251											
RYR2	6262	broad.mit.edu	37	chr1	237801618	237801618	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagcatctaatgagttttcAgccaagggataactctttgt	8	7	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237801618	G	G	237801618	1	3	26	0	1	0	0	0	0	0	0	0	13880	203	7	5		5	RYR2	1	237801618	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	808876	237801618	11449003	168	42252											
RYR2	6262	broad.mit.edu	37	chr1	237942011	237942011	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttggcacacagcaggctgTgggatgctgtggtcggcttt	16	8	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237942011	A	A	237942011	3	1	26	1	0	0	0	0	1	0	0	0	13880	1696	59	5	12171	5	RYR2	1	237942011	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	140393	237942011	11308610	169	42253											
RYR2	6262	broad.mit.edu	37	chr1	237965182	237965182	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccattgatgtgaagtatcAgatgtggaaactaggagtcg	12	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237965182	T	T	237965182	3	4	26	1	0	0	0	0	1	0	0	0	13880	188	7	5	14507	5	RYR2	1	237965182	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	23171	237965182	11285439	170	42254											
RYR2	6262	broad.mit.edu	37	chr1	237982399	237982399	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatcggggatgaaatcgaaGacccagcaggagatgaatat	14	6	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237982399	C	C	237982399	3	2	26	1	0	0	0	0	1	0	0	0	13880	942	33	4	14899	4	RYR2	1	237982399	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	17217	237982399	11268222	171	42255											
ZP4	57829	broad.mit.edu	37	chr1	238051909	238051909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggattcctgtagatatGtagatgattgaaataggtgt	11	3	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238051909	T	T	238051909	1	4	26	0	1	0	0	0	0	0	0	0	18347	1392	48	3		3	ZP4	1	238051909	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	69510	238051909	11198712	172	42256											
ZP4	57829	broad.mit.edu	37	chr1	238053192	238053192	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatccataggacacttgagCagcttcctctctgtaaccac	7	13	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238053192	A	A	238053192	2	1	26	1	0	0	0	0	0	0	0	1	18347	697	25	3		3	ZP4	1	238053192	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1283	238053192	11197429	173	42257											
SMYD3	64754	broad.mit.edu	37	chr1	245912930	245912930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatcttcaatcaggctgtGttctctgccatgtgtcactc	7	12	5	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245912930	T	T	245912930	3	4	26	1	0	0	0	0	1	0	0	0	14937	1377	48	3	68	3	SMYD3	1	245912930	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	7859738	245912930	3337691	174	42258											
OR2W5	441932	broad.mit.edu	37	chr1	247654812	247654812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctatgtggccgtctgccGgtccctgcactacatggcag	12	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247654812	T	T	247654812	3	4	26	1	0	0	0	0	1	0	0	0	11128	1116	39	1	385	1	OR2W5	1	247654812	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1741882	247654812	1595809	175	42259											
C1orf150	148823	broad.mit.edu	37	chr1	247712342	247712342	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgccttctctatcatgCgcaggcccctggcagctcgt	9	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247712342	T	T	247712342	1	4	26	0	1	0	0	0	0	0	0	0	2024	783	27	4		4	C1orf150	1	247712342	5'Flank	SNP	C	TCGA-05-4432-01A-01D-1265-08	57530	247712342	1538279	176	42260											
OR2G2	81470	broad.mit.edu	37	chr1	247752015	247752015	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactgagtgcgtcctcccGgctgtgatgtcctgtgaccg	12	14	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247752015	T	T	247752015	2	4	26	1	0	0	0	0	0	0	0	1	11092	1103	39	1		1	OR2G2	1	247752015	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	39673	247752015	1498606	177	42261											
OR2G2	81470	broad.mit.edu	37	chr1	247752598	247752598	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagttctagcaaaggctctgGgagtaaatattttatgatta	9	4	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247752598	C	C	247752598	3	2	26	1	0	0	0	0	1	0	0	0	11092	1233	43	4	939	4	OR2G2	1	247752598	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	583	247752598	1498023	178	42262											
OR1C1	26188	broad.mit.edu	37	chr1	247921241	247921241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaggacagtatgcaggagGgcgtggaggtaagtaacaag	16	4	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921241	T	T	247921241	2	4	26	1	0	0	0	0	0	0	0	1	11046	1219	43	2		2	OR1C1	1	247921241	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	168643	247921241	1329380	179	42263											
OR11L1	391189	broad.mit.edu	37	chr1	248004340	248004340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaagctgtagataactgGgttcagcagtggtgtgacca	12	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248004340	T	T	248004340	3	4	26	1	0	0	0	0	1	0	0	0	11024	1232	43	2	113	2	OR11L1	1	248004340	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	83099	248004340	1246281	180	42264											
OR2AK2	391191	broad.mit.edu	37	chr1	248129413	248129413	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccacttgttcctcccacctGattgtggcaagcctgttcta	7	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248129413	A	A	248129413	2	1	26	1	0	0	0	0	0	0	0	1	11080	1277	45	4		4	OR2AK2	1	248129413	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	125073	248129413	1121208	181	42265											
OR2AK2	391191	broad.mit.edu	37	chr1	248129470	248129470	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctacacaaggccacactcCttgcgttccccttcacggga	7	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248129470	T	T	248129470	2	4	26	1	0	0	0	0	0	0	0	1	11080	668	24	4		4	OR2AK2	1	248129470	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	57	248129470	1121151	182	42266											
OR2L13	284521	broad.mit.edu	37	chr1	248138975	248138975	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgaagacaaactttctgCcttagagtccaagcactagc	8	10	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248138975	T	T	248138975	1	4	26	0	1	0	0	0	0	0	0	0	11100	754	26	4		4	OR2L13	1	248138975	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	9505	248138975	1111646	183	42267											
OR2L3	391192	broad.mit.edu	37	chr1	248224139	248224139	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcatcttcttggacacCcatctccacacacccatgta	3	17	4	0	rs113796306		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248224139	T	T	248224139	2	4	26	1	0	0	0	0	0	0	0	1	11102	610	22	4		4	OR2L3	1	248224139	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	85164	248224139	1026482	184	42268											
OR2L3	391192	broad.mit.edu	37	chr1	248224332	248224332	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcactacttttggcatctAtggcctatgatcgttacatt	7	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248224332	G	G	248224332	3	3	26	1	0	0	0	0	1	0	0	0	11102	449	16	5	351	5	OR2L3	1	248224332	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	193	248224332	1026289	185	42269											
OR2L13	284521	broad.mit.edu	37	chr1	248262533	248262533	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaattgattaaaaaaaacCtgcagtgttagtggagaaac	9	4	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248262533	T	T	248262533	1	4	26	0	1	0	0	0	0	0	0	0	11100	696	24	4		4	OR2L13	1	248262533	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	38201	248262533	988088	186	42270											
OR2L13	284521	broad.mit.edu	37	chr1	248263030	248263031	+	Missense_Mutation	DNP	CC	AA	AA													cttactcctgacctccatggCctacgaccgttatttggcca							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	248263031	AA	AA	248263030	3	1	26	1	0	0	0	0	1	0	0	0	11100	739	26	3	355	3	OR2L13	1	248263030	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	497	248263030	987591	187	42271											
OR2M5	127059	broad.mit.edu	37	chr1	248308564	248308564	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccatcttttcagtggccTtcatgggaaactctgtcatg	10	10	5	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308564	A	A	248308564	3	1	26	1	0	0	0	0	1	0	0	0	11107	1609	56	5	117	5	OR2M5	1	248308564	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	45534	248308564	942057	188	42272											
OR2M4	26245	broad.mit.edu	37	chr1	248402946	248402946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcgtcgcaaggccttcaCtacctgctcctcccacctgt	7	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248402946	A	A	248402946	3	1	26	1	0	0	0	0	1	0	0	0	11106	565	20	3	718	3	OR2M4	1	248402946	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	94382	248402946	847675	189	42273											
OR2T3	343173	broad.mit.edu	37	chr1	248637034	248637034	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccatggcctatgaccgatAtgctgctgtttgcagacctc	10	12	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248637034	G	G	248637034	3	3	26	1	0	0	0	0	1	0	0	0	11117	449	16	5	385	5	OR2T3	1	248637034	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	234088	248637034	613587	190	42274											
MYT1L	23040	broad.mit.edu	37	chr2	1983684	1983684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgaagggaagccctctaCaagggcagggggtaagacca	14	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1983684	A	A	1983684	1	1	26	0	1	0	0	0	0	0	0	0	10201	493	17	3		3	MYT1L	2	1983684	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08		1983684	241215689	191	42275											
RNASEH1	246243	broad.mit.edu	37	chr2	3597784	3597784	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagtaaagctgaggtacctCacgttctgaaaagcaatgcc	10	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3597784	A	A	3597784	1	1	26	0	1	0	0	0	0	0	0	0	13522	841	29	3		3	RNASEH1	2	3597784	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1614100	3597784	239601589	192	42276											
KCNS3	3790	broad.mit.edu	37	chr2	18112296	18112296	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggtgtttggtgagtttttCcatcgccctggacaagacga	12	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18112296	T	T	18112296	2	4	26	1	0	0	0	0	0	0	0	1	8160	854	30	4		4	KCNS3	2	18112296	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	14514512	18112296	225087077	193	42277											
APOB	338	broad.mit.edu	37	chr2	21227177	21227177	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttccatttagaaaagtcGtcatcttcatccatatccat	4	10	3	1	rs12713501	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21227177	A	A	21227177	2	1	26	1	0	0	0	0	0	0	0	1	787	1136	40	4		4	APOB	2	21227177	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	3114881	21227177	221972196	194	42278											
APOB	338	broad.mit.edu	37	chr2	21233898	21233898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgatgacttgtggagcCtttgtaatcatgagagaaag	13	4	1	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21233898	A	A	21233898	3	1	26	1	0	0	0	0	1	0	0	0	787	681	24	2	7865	2	APOB	2	21233898	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	6721	21233898	221965475	195	42279											
CIB4	130106	broad.mit.edu	37	chr2	26805827	26805827	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagtggaaccccatgtcagGcagtgaggtggggcacaggg	18	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26805827	C	C	26805827	1	2	26	0	1	0	0	0	0	0	0	0	3454	1218	42	4		4	CIB4	2	26805827	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	5571929	26805827	216393546	196	42280											
PPM1G	5496	broad.mit.edu	37	chr2	27608704	27608704	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctttaatgacttcttcagTggtcaatttggcgtcaatag	8	8	5	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27608704	A	A	27608704	3	1	26	1	0	0	0	0	1	0	0	0	12441	1696	59	5	1349	5	PPM1G	2	27608704	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	802877	27608704	215590669	197	42281											
BRE	9577	broad.mit.edu	37	chr2	28459954	28459954	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatatacccatcatcattaAcctaggcagttggtggccag	8	12	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28459954	G	G	28459954	1	3	26	0	1	0	0	0	0	0	0	0	1518	58	2	5		5	BRE	2	28459954	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	851250	28459954	214739419	198	42282											
ALK	238	broad.mit.edu	37	chr2	29606525	29606526	+	Intron	DNP	AC	GA	GA													gtgtgcacattcccagccaaAcatggttgcaggttattgac							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	29606526	GA	GA	29606525	1	3	26	0	1	0	0	0	0	0	0	0	525	58	2	5		5	ALK	2	29606525	Intron	DNP	AC	TCGA-05-4432-01A-01D-1265-08	1146571	29606525	213592848	199	42283											
ALK	238	broad.mit.edu	37	chr2	29917880	29917881	+	Splice_Site	DNP	CC	AT	AT													agtcaaagctgcactccagaCctgcaataatagccaagggt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	29917881	AT	AT	29917880	5	1	26	1	0	0	0	0	0	0	1	0	525	521	18	3	4182	3	ALK	2	29917880	Splice_Site	DNP	CC	TCGA-05-4432-01A-01D-1265-08	311355	29917880	213281493	200	42284											
LCLAT1	253558	broad.mit.edu	37	chr2	30756239	30756239	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttagatgtaatgcacccacTgtaaaactgacttaagcatt	6	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30756239	A	A	30756239	1	1	26	0	1	0	0	0	0	0	0	0	8749	1595	55	5		5	LCLAT1	2	30756239	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	838359	30756239	212443134	201	42285											
GALNT14	79623	broad.mit.edu	37	chr2	31178382	31178382	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgatctgttctgcccacctCccagaagaactgggggttgc	12	13	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31178382	A	A	31178382	1	1	26	0	1	0	0	0	0	0	0	0	6274	870	30	3		3	GALNT14	2	31178382	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	422143	31178382	212020991	202	42286											
LTBP1	4052	broad.mit.edu	37	chr2	33359867	33359867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccgctcctagtgagtaaCcacactggccgcatcaaggt	9	15	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33359867	A	A	33359867	3	1	26	1	0	0	0	0	1	0	0	0	9160	506	18	3	1114	3	LTBP1	2	33359867	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2181485	33359867	209839506	203	42287											
LTBP1	4052	broad.mit.edu	37	chr2	33484577	33484577	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagagataatggacttctaTtgttttttaagaattgaaat	8	3	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33484577	C	C	33484577	1	2	26	0	1	0	0	0	0	0	0	0	9160	1508	52	5		5	LTBP1	2	33484577	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	124710	33484577	209714796	204	42288											
VIT	5212	broad.mit.edu	37	chr2	37014216	37014216	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagaggaacaagaggatgcCcaggtaaatgcagtgagaga	14	5	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37014216	G	G	37014216	1	3	26	0	1	0	0	0	0	0	0	0	17298	638	22	4		4	VIT	2	37014216	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3529639	37014216	206185157	205	42289											
SLC8A1	6546	broad.mit.edu	37	chr2	40657101	40657101	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatttctttttcttgagatGtgatgacttctatagaggac	8	5	3	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40657101	A	A	40657101	3	1	26	1	0	0	0	0	1	0	0	0	14820	1377	48	4	2749	4	SLC8A1	2	40657101	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3642885	40657101	202542272	206	42290											
SLC8A1	6546	broad.mit.edu	37	chr2	40657514	40657514	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagctgcagccaaagcattaCtaattacttatttttattac	5	8	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40657514	G	G	40657514	1	3	26	0	1	0	0	0	0	0	0	0	14820	580	20	4		4	SLC8A1	2	40657514	5'Flank	SNP	C	TCGA-05-4432-01A-01D-1265-08	413	40657514	202541859	207	42291											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48872251	48872251	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtgacactacagactgTatctggtgagagtatattct	11	6	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48872251	C	C	48872251	1	2	26	0	1	0	0	0	0	0	0	0	15435	1638	57	5		5	STON1-GTF2A1L	2	48872251	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	8214737	48872251	194327122	208	42292											
NRXN1	9378	broad.mit.edu	37	chr2	50765619	50765619	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgcagcccacgtagcCatagttgagcagagcagtcc	11	13	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50765619	T	T	50765619	3	4	26	1	0	0	0	0	1	0	0	0	10760	594	21	4	2927	4	NRXN1	2	50765619	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1893368	50765619	192433754	209	42293											
BCL11A	53335	broad.mit.edu	37	chr2	60687791	60687791	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagtgagattgctacagttCttgaagactttcccacagta	8	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60687791	T	T	60687791	2	4	26	1	0	0	0	0	0	0	0	1	1368	912	32	4		4	BCL11A	2	60687791	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	9922172	60687791	182511582	210	42294											
OTX1	5013	broad.mit.edu	37	chr2	63283009	63283009	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacacctcgtgtatgcagcGctccgtagctgcaggcgccg	12	15	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63283009	A	A	63283009	3	1	26	1	0	0	0	0	1	0	0	0	11414	1087	38	4	633	4	OTX1	2	63283009	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2595218	63283009	179916364	211	42295											
C2orf86	51057	broad.mit.edu	37	chr2	63540353	63540353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttagccttagaactgaaGgcacaaaatcatctctgaaa	6	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63540353	A	A	63540353	1	1	26	0	1	0	0	0	0	0	0	0	2223	1015	35	4		4	C2orf86	2	63540353	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	257344	63540353	179659020	212	42296											
GKN1	56287	broad.mit.edu	37	chr2	69207975	69207975	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaattttttaaagccactAtggatttagtcatctgaata	5	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69207975	G	G	69207975	1	3	26	0	1	0	0	0	0	0	0	0	6488	464	16	5		5	GKN1	2	69207975	3'UTR	SNP	A	TCGA-05-4432-01A-01D-1265-08	5667622	69207975	173991398	213	42297											
DYSF	8291	broad.mit.edu	37	chr2	71766288	71766288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctgctcccttgctctaggGaccgcctgactcacaatgac	8	16	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71766288	T	T	71766288	3	4	26	1	0	0	0	0	1	0	0	0	4899	1188	41	3	1653	3	DYSF	2	71766288	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2558313	71766288	171433085	214	42298											
SMYD5	10322	broad.mit.edu	37	chr2	73449044	73449044	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattgtccataaacttctgGgagacaaattcaaggttatt	7	6	2	1	rs140745382	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73449044	T	T	73449044	4	4	26	1	0	0	0	0	0	1	0	0	14939	1233	43	2	650	2	SMYD5	2	73449044	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1682756	73449044	169750329	215	42299											
NAT8B	51471	broad.mit.edu	37	chr2	73927988	73927988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgctatcccctgaccacGgtgctcattgtccacagaga	8	13	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73927988	T	T	73927988	3	4	26	1	0	0	0	0	1	0	0	0	10274	1116	39	1	242	1	NAT8B	2	73927988	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	478944	73927988	169271385	216	42300											
TACR1	6869	broad.mit.edu	37	chr2	75426079	75426079	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcgaagctaggcggtaaAgccctactatctgtacacaa	8	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75426079	T	T	75426079	1	4	26	0	1	0	0	0	0	0	0	0	15624	87	3	5		5	TACR1	2	75426079	5'UTR	SNP	A	TCGA-05-4432-01A-01D-1265-08	1498091	75426079	167773294	217	42301											
LRRTM4	80059	broad.mit.edu	37	chr2	76975799	76975799	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccccccatggagctcccCagtgaggagttggcttcagc	11	16	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76975799	A	A	76975799	1	1	26	0	1	0	0	0	0	0	0	0	9129	609	21	2		2	LRRTM4	2	76975799	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	1549720	76975799	166223574	218	42302											
LRRTM4	80059	broad.mit.edu	37	chr2	77745883	77745883	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtttggggcaccaggtgtGatctttctgtgttgaccacc	13	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77745883	T	T	77745883	4	4	26	1	0	0	0	0	0	1	0	0	9129	1294	45	3	674	3	LRRTM4	2	77745883	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	770084	77745883	165453490	219	42303											
LRRTM4	80059	broad.mit.edu	37	chr2	77746271	77746271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaccttggctaatggagcGaatcctgttccattgtaagt	9	9	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77746271	T	T	77746271	3	4	26	1	0	0	0	0	1	0	0	0	9129	1058	37	3	1062	3	LRRTM4	2	77746271	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	388	77746271	165453102	220	42304											
REG3G	130120	broad.mit.edu	37	chr2	79254299	79254299	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccatgaccccacacaggTgcgagtatatcctcccctct	7	17	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79254299	A	A	79254299	5	1	26	1	0	0	0	0	0	0	1	0	13321	1710	59	5	345	5	REG3G	2	79254299	Splice_Site	SNP	T	TCGA-05-4432-01A-01D-1265-08	1508028	79254299	163945074	221	42305											
REG3A	5068	broad.mit.edu	37	chr2	79384669	79384669	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggatgagatggaaaacacTgggaagaggcagctcctctg	16	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384669	A	A	79384669	1	1	26	0	1	0	0	0	0	0	0	0	13320	1595	55	5		5	REG3A	2	79384669	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	130370	79384669	163814704	222	42306											
REG3A	5068	broad.mit.edu	37	chr2	79384785	79384785	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaattcatcacatcacTgctactccactcccaacctt	2	15	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384785	A	A	79384785	3	1	26	1	0	0	0	0	1	0	0	0	13320	1580	55	5	162	5	REG3A	2	79384785	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	116	79384785	163814588	223	42307											
CTNNA2	1496	broad.mit.edu	37	chr2	80136743	80136743	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagattatcctggaccccatGacgttcagcgaggccaggtt	11	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80136743	C	C	80136743	3	2	26	1	0	0	0	0	1	0	0	0	4047	1290	45	4		4	CTNNA2	2	80136743	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	751958	80136743	163062630	224	42308											
CTNNA2	1496	broad.mit.edu	37	chr2	80389590	80389590	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttagtgtcgagatgagCgccattttccatctctgcta	10	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80389590	T	T	80389590	1	4	26	0	1	0	0	0	0	0	0	0	4047	783	27	4		4	CTNNA2	2	80389590	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	252847	80389590	162809783	225	42309											
DNAH6	1768	broad.mit.edu	37	chr2	84800559	84800559	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcttaacaaaaatatgGtcatatttgtctgcttattt	5	6	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84800559	C	C	84800559	1	2	26	0	1	0	0	0	0	0	0	0	4645	1276	44	4		4	DNAH6	2	84800559	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4410969	84800559	158398814	226	42310											
DNAH6	1768	broad.mit.edu	37	chr2	84800859	84800859	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagagttaattcatttctaGgttattttctatagaatcac	5	6	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84800859	A	A	84800859	1	1	26	0	1	0	0	0	0	0	0	0	4645	1015	35	4		4	DNAH6	2	84800859	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	300	84800859	158398514	227	42311											
PTCD3	55037	broad.mit.edu	37	chr2	86358165	86358165	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgaaaatatattttatccAttgtaaccaaagctcttgtg	5	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86358165	G	G	86358165	1	3	26	0	1	0	0	0	0	0	0	0	12835	232	8	5		5	PTCD3	2	86358165	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1557306	86358165	156841208	228	42312											
ZNF2	7549	broad.mit.edu	37	chr2	95846078	95846078	+	Intron	DEL	G	-	-													ctttttgttatttgggtgatGggggaaataacaggtatcat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95846078	-	-	95846078	6	5	26	0	1	1	0	1	0	0	0	0	17886	1363	47	0		0	ZNF2	2	95846078	Intron	DEL	G	TCGA-05-4432-01A-01D-1265-08	9487913	95846078	147353295	229	42313											
ASTL	431705	broad.mit.edu	37	chr2	96799710	96799710	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgctcactcaccgtactTgctggagagcaggaagggga	13	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96799710	C	C	96799710	3	2	26	1	0	0	0	0	1	0	0	0	1067	1821	63	5	987	5	ASTL	2	96799710	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	953632	96799710	146399663	230	42314											
ITPRIPL1	150771	broad.mit.edu	37	chr2	96993504	96993504	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaagacaccttggtctacCtggtgagtcaggctcctgac	12	11	2	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96993504	T	T	96993504	2	4	26	1	0	0	0	0	0	0	0	1	7994	680	24	4		4	ITPRIPL1	2	96993504	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	193794	96993504	146205869	231	42315											
ARID5A	10865	broad.mit.edu	37	chr2	97217402	97217402	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctcctggcaaagagggGctgtcagtgaaagagcccca	15	11	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97217402	T	T	97217402	2	4	26	1	0	0	0	0	0	0	0	1	923	1190	42	3		3	ARID5A	2	97217402	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	223898	97217402	145981971	232	42316											
CNNM4	26504	broad.mit.edu	37	chr2	97427550	97427550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggtccggcctcatggcgGtggcctcctccaccattggc	13	16	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97427550	T	T	97427550	3	4	26	1	0	0	0	0	1	0	0	0	3647	1261	44	3	816	3	CNNM4	2	97427550	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	210148	97427550	145771823	233	42317											
AFF3	3899	broad.mit.edu	37	chr2	100185432	100185432	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttaagtgcaacgtcttttTaaaatattccttcctttcac	4	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100185432	A	A	100185432	1	1	26	0	1	0	0	0	0	0	0	0	358	1769	61	5		5	AFF3	2	100185432	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2757882	100185432	143013941	234	42318											
AFF3	3899	broad.mit.edu	37	chr2	100360620	100360620	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgaaagaacaagaaatAtcaattaattttcttatttt	4	5	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100360620	T	T	100360620	1	4	26	0	1	0	0	0	0	0	0	0	358	464	16	5		5	AFF3	2	100360620	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	175188	100360620	142838753	235	42319											
RGPD3	653489	broad.mit.edu	37	chr2	107032375	107032375	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccgtttaagtgatctgcActttttgtggtggaactgag	13	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107032375	C	C	107032375	3	2	26	1	0	0	0	0	1	0	0	0	13395	156	6	5	293	5	RGPD3	2	107032375	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	6671755	107032375	136166998	236	42320											
SEPT10	151011	broad.mit.edu	37	chr2	110310790	110310790	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttggcttcataggtctcTtgaacactaaaaagttattt	6	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110310790	C	C	110310790	2	2	26	1	0	0	0	0	0	0	0	1	14173	1606	56	5		5	SEPT10	2	110310790	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	3278415	110310790	132888583	237	42321											
CKAP2L	150468	broad.mit.edu	37	chr2	113513676	113513676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggttctggggaacagcCtttttcaacttggagtccaa	10	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113513676	A	A	113513676	3	1	26	1	0	0	0	0	1	0	0	0	3474	680	24	2	989	2	CKAP2L	2	113513676	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	3202886	113513676	129685697	238	42322											
IL1F9	56300	broad.mit.edu	37	chr2	113736305	113736305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgggatggggctctggagGcttaggccctctgcactcac	15	11	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113736305	T	T	113736305	1	4	26	0	1	0	0	0	0	0	0	0	7727	1218	42	3		3	IL1F9	2	113736305	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	222629	113736305	129463068	239	42323											
DPP10	57628	broad.mit.edu	37	chr2	116540089	116540089	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcaaaaaatccccaccAtgaggaaagctgcgtgtata	7	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116540089	G	G	116540089	1	3	26	0	1	0	0	0	0	0	0	0	4767	232	8	5		5	DPP10	2	116540089	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2803784	116540089	126659284	240	42324											
DDX18	8886	broad.mit.edu	37	chr2	118588360	118588360	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgaattttttttccccttGatttaacaggatttttgtag	6	5	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118588360	T	T	118588360	1	4	26	0	1	0	0	0	0	0	0	0	4378	1305	45	3		3	DDX18	2	118588360	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	2048271	118588360	124611013	241	42325											
GLI2	2736	broad.mit.edu	37	chr2	121747002	121747002	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accctttcctcagggcaaccTggcggtggtgcagcagaagc	13	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121747002	A	A	121747002	3	1	26	1	0	0	0	0	1	0	0	0	6502	1580	55	5	3562	5	GLI2	2	121747002	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3158642	121747002	121452371	242	42326											
TSN	7247	broad.mit.edu	37	chr2	122518948	122518948	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccatctttctgaaggtccCtaaccttggaggctaaatgt	8	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122518948	T	T	122518948	1	4	26	0	1	0	0	0	0	0	0	0	16754	696	24	4		4	TSN	2	122518948	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	771946	122518948	120680425	243	42327											
CNTNAP5	129684	broad.mit.edu	37	chr2	125175123	125175123	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctggaatggaatcccaGtgggaagattggcatgagag	15	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125175123	A	A	125175123	3	1	26	1	0	0	0	0	1	0	0	0	3682	1029	36	4	499	4	CNTNAP5	2	125175123	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2656175	125175123	118024250	244	42328											
CNTNAP5	129684	broad.mit.edu	37	chr2	125284984	125284984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagttcagcaaggttccCtggggaattttagtgattta	10	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125284984	A	A	125284984	3	1	26	1	0	0	0	0	1	0	0	0	3682	680	24	2	1635	2	CNTNAP5	2	125284984	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	109861	125284984	117914389	245	42329											
WDR33	55339	broad.mit.edu	37	chr2	128484486	128484486	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgttttgtgaagactctTtggcctctgtgtgtctggaa	11	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128484486	C	C	128484486	1	2	26	0	1	0	0	0	0	0	0	0	17414	1856	64	5		5	WDR33	2	128484486	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	3199502	128484486	114714887	246	42330											
CCDC74B	91409	broad.mit.edu	37	chr2	130897872	130897872	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggggtgtgccgccgccccCatctgcctgccctggtgctg	16	16	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130897872	T	T	130897872	3	4	26	1	0	0	0	0	1	0	0	0	2876	594	21	4	402	4	CCDC74B	2	130897872	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2413386	130897872	112301501	247	42331											
PLEKHB2	55041	broad.mit.edu	37	chr2	131936092	131936092	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaaaacactggctggtTtcagatcccgacgcactaca	9	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131936092	C	C	131936092	1	2	26	0	1	0	0	0	0	0	0	0	12160	1856	64	5		5	PLEKHB2	2	131936092	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1038220	131936092	111263281	248	42332											
YSK4	80122	broad.mit.edu	37	chr2	135738353	135738353	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctgccacttggaatctccGggcatttatcttcctcctct	7	14	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135738353	C	C	135738353	1	2	26	0	1	0	0	0	0	0	0	0	17622	1131	39	4		4	YSK4	2	135738353	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3802261	135738353	107461020	249	42333											
YSK4	80122	broad.mit.edu	37	chr2	135782085	135782086	+	Intron	DNP	CC	AA	AA													agtcactgctccataaatagCcgtggacttgatttctttaa							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	135782086	AA	AA	135782085	1	1	26	0	1	0	0	0	0	0	0	0	17622	754	26	3		3	YSK4	2	135782085	Intron	DNP	CC	TCGA-05-4432-01A-01D-1265-08	43732	135782085	107417288	250	42334											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135815728	135815728	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttccagccctttgctgcAtttggcacatttgaattaaa	6	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135815728	G	G	135815728	1	3	26	0	1	0	0	0	0	0	0	0	13043	232	8	5		5	RAB3GAP1	2	135815728	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	33643	135815728	107383645	251	42335											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135872733	135872733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaaaatttgaggttcaGgtttaatgtttaatgagctt	10	2	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135872733	T	T	135872733	1	4	26	0	1	0	0	0	0	0	0	0	13043	1015	35	2		2	RAB3GAP1	2	135872733	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	57005	135872733	107326640	252	42336											
R3HDM1	23518	broad.mit.edu	37	chr2	136399364	136399364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaacccacaaacaggttGgtatccagaaaaaggtgttt	9	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136399364	T	T	136399364	1	4	26	0	1	0	0	0	0	0	0	0	12995	1363	47	2		2	R3HDM1	2	136399364	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	526631	136399364	106800009	253	42337											
MCM6	4175	broad.mit.edu	37	chr2	136633884	136633884	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggccacctcgtcgcggaCctccaggtgctggctgccgg	14	17	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136633884	T	T	136633884	3	4	26	1	0	0	0	0	1	0	0	0	9484	507	18	4	2481	4	MCM6	2	136633884	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	234520	136633884	106565489	254	42338											
LRP1B	53353	broad.mit.edu	37	chr2	141108580	141108580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggatatcagtgtcattaGcaatgtagagaacttgatct	9	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141108580	T	T	141108580	3	4	26	1	0	0	0	0	1	0	0	0	9042	971	34	3	2181	3	LRP1B	2	141108580	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4474696	141108580	102090793	255	42339											
LRP1B	53353	broad.mit.edu	37	chr2	141528458	141528458	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaactcataccttgacatGacatacggttcttttggaga	8	8	2	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141528458	T	T	141528458	4	4	26	1	0	0	0	0	0	1	0	0	9042	1294	45	3	8413	3	LRP1B	2	141528458	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	419878	141528458	101670915	256	42340											
ARHGAP15	55843	broad.mit.edu	37	chr2	143913162	143913162	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaaatgccaacagccacCatgacaggctcagccaaagt	7	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143913162	G	G	143913162	3	3	26	1	0	0	0	0	1	0	0	0	868	594	21	4	105	4	ARHGAP15	2	143913162	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2384704	143913162	99286211	257	42341											
ZEB2	9839	broad.mit.edu	37	chr2	145157860	145157860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgataattaaaattacCgttacatttccttgattaga	4	5	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145157860	T	T	145157860	1	4	26	0	1	0	0	0	0	0	0	0	17750	667	23	4		4	ZEB2	2	145157860	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1244698	145157860	98041513	258	42342											
LYPD6B	130576	broad.mit.edu	37	chr2	150061878	150061878	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaagctgggcatttgcCaagaacatcaacttctataa	7	9	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150061878	A	A	150061878	2	1	26	1	0	0	0	0	0	0	0	1	9203	581	21	2		2	LYPD6B	2	150061878	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	4904018	150061878	93137495	259	42343											
LY75	4065	broad.mit.edu	37	chr2	160738874	160738874	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaagatacatctattgTgaatcaataacattgcaaat	5	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160738874	C	C	160738874	1	2	26	0	1	0	0	0	0	0	0	0	9187	1711	59	5		5	LY75	2	160738874	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	10676996	160738874	82460499	260	42344											
PLA2R1	22925	broad.mit.edu	37	chr2	160862202	160862202	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtgtgtactgcaccggctCgggtttctgccctactggct	13	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160862202	A	A	160862202	4	1	26	1	0	0	0	0	0	1	0	0	12105	893	31	3	2684	3	PLA2R1	2	160862202	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	123328	160862202	82337171	261	42345											
TBR1	10716	broad.mit.edu	37	chr2	162274732	162274732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaatcgggtctatatgcatCcggattcccccaacactggg	10	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162274732	A	A	162274732	3	1	26	1	0	0	0	0	1	0	0	0	15769	855	30	3	878	3	TBR1	2	162274732	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1412530	162274732	80924641	262	42346											
TBR1	10716	broad.mit.edu	37	chr2	162275687	162275687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacagctggctccgctGtgcgttttaaggcttagggc	13	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162275687	T	T	162275687	1	4	26	0	1	0	0	0	0	0	0	0	15769	1392	48	3		3	TBR1	2	162275687	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	955	162275687	80923686	263	42347											
DPP4	1803	broad.mit.edu	37	chr2	162930442	162930442	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggagtttggcgaagagGtccccacagctcgccccggg	16	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162930442	T	T	162930442	1	4	26	0	1	0	0	0	0	0	0	0	4769	1276	44	3		3	DPP4	2	162930442	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	654755	162930442	80268931	264	42348											
KCNH7	90134	broad.mit.edu	37	chr2	163292062	163292062	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcctggccacgcgcacaaGacggaggagtcgggcagtct	14	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163292062	T	T	163292062	3	4	26	1	0	0	0	0	1	0	0	0	8107	942	33	3	2092	3	KCNH7	2	163292062	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	361620	163292062	79907311	265	42349											
KCNH7	90134	broad.mit.edu	37	chr2	163361078	163361078	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgaaaaattcagagtgaGctgtggaatcttgttaatgg	11	5	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163361078	C	C	163361078	3	2	26	1	0	0	0	0	1	0	0	0	8107	971	34	4	2697	4	KCNH7	2	163361078	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	69016	163361078	79838295	266	42350											
SCN2A	6326	broad.mit.edu	37	chr2	166166777	166166777	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctcatgatatttttgccGgtaaaatagctgttgagtag	10	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166166777	A	A	166166777	1	1	26	0	1	0	0	0	0	0	0	0	14029	1131	39	4		4	SCN2A	2	166166777	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2805699	166166777	77032596	267	42351											
XIRP2	129446	broad.mit.edu	37	chr2	168108519	168108519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcatgtgttccatagccAaaatgatgtacagttaaaaa	8	6	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168108519	G	G	168108519	1	3	26	0	1	0	0	0	0	0	0	0	17557	145	5	5		5	XIRP2	2	168108519	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1941742	168108519	75090854	268	42352											
LRP2	4036	broad.mit.edu	37	chr2	170009461	170009461	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccctcccctcgcacagtGtaatacacaacacctacaga	6	16	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170009461	A	A	170009461	2	1	26	1	0	0	0	0	0	0	0	1	9043	1372	48	4		4	LRP2	2	170009461	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1900942	170009461	73189912	269	42353											
LRP2	4036	broad.mit.edu	37	chr2	170088134	170088134	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaaaggacacagcacatgTtcagtcgcaattggttttag	9	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170088134	C	C	170088134	1	2	26	0	1	0	0	0	0	0	0	0	9043	1740	60	5		5	LRP2	2	170088134	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	78673	170088134	73111239	270	42354											
FASTKD1	79675	broad.mit.edu	37	chr2	170403036	170403036	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attatccaaatacatgtgatCatgctgaatccatcttaaaa	4	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170403036	A	A	170403036	3	1	26	1	0	0	0	0	1	0	0	0	5742	826	29	3	1182	3	FASTKD1	2	170403036	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	314902	170403036	72796337	271	42355											
MYO3B	140469	broad.mit.edu	37	chr2	171260966	171260966	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaacaaaacttggcttgtgtCatcaattgagtgtactttaa	8	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171260966	T	T	171260966	1	4	26	0	1	0	0	0	0	0	0	0	10171	841	29	4		4	MYO3B	2	171260966	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	857930	171260966	71938407	272	42356											
MYO3B	140469	broad.mit.edu	37	chr2	171260986	171260986	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaattgagtgtactttaAtgaatttaccttacatattt	4	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171260986	G	G	171260986	1	3	26	0	1	0	0	0	0	0	0	0	10171	116	4	5		5	MYO3B	2	171260986	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	20	171260986	71938387	273	42357											
TLK1	9874	broad.mit.edu	37	chr2	171910453	171910453	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactccaaattcaaaaggtAaagaaaaatatatttgtgtg	6	4	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171910453	G	G	171910453	1	3	26	0	1	0	0	0	0	0	0	0	16066	377	13	5		5	TLK1	2	171910453	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	649467	171910453	71288920	274	42358											
KIAA1715	80856	broad.mit.edu	37	chr2	176858037	176858037	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcattaaagaacatttattTcaaaattaaattttctcaaa	1	5	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176858037	C	C	176858037	1	2	26	0	1	0	0	0	0	0	0	0	8324	1798	62	5		5	KIAA1715	2	176858037	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	4947584	176858037	66341336	275	42359											
AGPS	8540	broad.mit.edu	37	chr2	178386182	178386182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatgaattttaagttgaGtctctttaatcacacatggt	6	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178386182	T	T	178386182	1	4	26	0	1	0	0	0	0	0	0	0	394	1044	36	3		3	AGPS	2	178386182	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1528145	178386182	64813191	276	42360											
PDE11A	50940	broad.mit.edu	37	chr2	178704991	178704991	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttacctctgcatcaaagCgcggatcctggtaggcatca	9	13	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178704991	T	T	178704991	3	4	26	1	0	0	0	0	1	0	0	0	11725	768	27	4	1374	4	PDE11A	2	178704991	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	318809	178704991	64494382	277	42361											
PDE11A	50940	broad.mit.edu	37	chr2	178936786	178936786	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgtggatggccttggagcGggcaaaactcttccttagct	12	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178936786	A	A	178936786	3	1	26	1	0	0	0	0	1	0	0	0	11725	1116	39	4	2502	4	PDE11A	2	178936786	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	231795	178936786	64262587	278	42362											
TTN	7273	broad.mit.edu	37	chr2	179429980	179429980	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgagattttctgttgctGtgcctgcactatttgttgcc	9	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179429980	C	C	179429980	3	2	26	1	0	0	0	0	1	0	0	0	16861	1377	48	4	27248	4	TTN	2	179429980	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	493194	179429980	63769393	279	42363											
TTN	7273	broad.mit.edu	37	chr2	179432976	179432976	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggcaaatattctaaattgGtattctgtaccagttttcag	7	7	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179432976	A	A	179432976	2	1	26	1	0	0	0	0	0	0	0	1	16861	1256	44	4		4	TTN	2	179432976	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	2996	179432976	63766397	280	42364											
TTN	7273	broad.mit.edu	37	chr2	179440938	179440938	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagttgtatttttctttagtCtgaagatcaggaacaacgaa	8	5	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179440938	A	A	179440938	3	1	26	1	0	0	0	0	1	0	0	0	16861	912	32	3	38206	3	TTN	2	179440938	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	7962	179440938	63758435	281	42365											
TTN	7273	broad.mit.edu	37	chr2	179446708	179446708	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctttatttatagctgtaaCacggaactcatattcggtac	7	8	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179446708	G	G	179446708	3	3	26	1	0	0	0	0	1	0	0	0	16861	478	17	4	41783	4	TTN	2	179446708	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	5770	179446708	63752665	282	42366											
TTN	7273	broad.mit.edu	37	chr2	179450007	179450007	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctttccatacacatgGgcttcaattcggagtttttt	9	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179450007	T	T	179450007	2	4	26	1	0	0	0	0	0	0	0	1	16861	1219	43	2		2	TTN	2	179450007	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	3299	179450007	63749366	283	42367											
TTN	7273	broad.mit.edu	37	chr2	179468621	179468621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatatgggatctcctgcaaCctctggatctgatggttcac	9	11	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179468621	A	A	179468621	3	1	26	1	0	0	0	0	1	0	0	0	16861	507	18	3	53224	3	TTN	2	179468621	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	18614	179468621	63730752	284	42368											
TTN	7273	broad.mit.edu	37	chr2	179579781	179579781	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctttacactgatattccCcaatgtctgcagcatcgaca	7	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179579781	T	T	179579781	3	4	26	1	0	0	0	0	1	0	0	0	16861	623	22	4	78489	4	TTN	2	179579781	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	111160	179579781	63619592	285	42369											
TTN	7273	broad.mit.edu	37	chr2	179584410	179584410	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactttattgatgaatgtaaTgtgatgtttgctgtctgcag	10	5	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179584410	C	C	179584410	3	2	26	1	0	0	0	0	1	0	0	0	16861	1464	51	5	80844	5	TTN	2	179584410	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	4629	179584410	63614963	286	42370											
TTN	7273	broad.mit.edu	37	chr2	179616645	179616645	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcaggccaggagcttgtAgatgatattctacttgcata	9	7	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179616645	C	C	179616645	2	2	26	1	0	0	0	0	0	0	0	1	16861	407	15	5		5	TTN	2	179616645	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	32235	179616645	63582728	287	42371											
TTN	7273	broad.mit.edu	37	chr2	179647207	179647207	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggttgcaatttgccaatacTggtggggctgaaagtcaaaa	13	6	1	1	rs138506661	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179647207	C	C	179647207	1	2	26	0	1	0	0	0	0	0	0	0	16861	1595	55	5		5	TTN	2	179647207	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	30562	179647207	63552166	288	42372											
TTN	7273	broad.mit.edu	37	chr2	179659835	179659835	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatctcagcctcagatgaGgaggccacgtagccctcttg	10	14	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179659835	A	A	179659835	2	1	26	1	0	0	0	0	0	0	0	1	16861	987	35	4		4	TTN	2	179659835	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	12628	179659835	63539538	289	42373											
ITGA4	3676	broad.mit.edu	37	chr2	182339715	182339715	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatggagaaccttgtggaaaGacttgtttggaagagagaga	14	3	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182339715	T	T	182339715	3	4	26	1	0	0	0	0	1	0	0	0	7948	933	33	3	358	3	ITGA4	2	182339715	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2679880	182339715	60859658	290	42374											
ITGA4	3676	broad.mit.edu	37	chr2	182395301	182395301	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcaaagagtgtgtgcattAgagcagcaaaagagtgcaat	11	5	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182395301	T	T	182395301	3	4	26	1	0	0	0	0	1	0	0	0	7948	417	15	5	2683	5	ITGA4	2	182395301	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	55586	182395301	60804072	291	42375											
NCKAP1	10787	broad.mit.edu	37	chr2	183859679	183859679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatattccatattgagcCactctcctccctttctcctg	3	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183859679	A	A	183859679	1	1	26	0	1	0	0	0	0	0	0	0	10316	609	21	2		2	NCKAP1	2	183859679	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1464378	183859679	59339694	292	42376											
ZNF804A	91752	broad.mit.edu	37	chr2	185803479	185803479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctgcagccgcagctgCaggaacctttaaagtgcttc	11	12	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803479	A	A	185803479	3	1	26	1	0	0	0	0	1	0	0	0	18299	710	25	3	3370	3	ZNF804A	2	185803479	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1943800	185803479	57395894	293	42377											
CALCRL	10203	broad.mit.edu	37	chr2	188245400	188245400	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtagatacatttctgcttTtacctgatggatcaaagtcc	7	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	188245400	C	C	188245400	1	2	26	0	1	0	0	0	0	0	0	0	2606	1856	64	5		5	CALCRL	2	188245400	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2441921	188245400	54953973	294	42378											
CALCRL	10203	broad.mit.edu	37	chr2	188280512	188280512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctcatttccttgtatgaCaatgaatttggctacaccaa	6	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188280512	A	A	188280512	1	1	26	0	1	0	0	0	0	0	0	0	2606	493	17	3		3	CALCRL	2	188280512	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	35112	188280512	54918861	295	42379											
COL3A1	1281	broad.mit.edu	37	chr2	189856502	189856502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaagtgacagatttttaCagcctcagtaaagtttcagg	8	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189856502	T	T	189856502	1	4	26	0	1	0	0	0	0	0	0	0	3720	493	17	4		4	COL3A1	2	189856502	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1575990	189856502	53342871	296	42380											
COL3A1	1281	broad.mit.edu	37	chr2	189862452	189862452	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtgacaaaggagacacAggaccccctggtccacaagg	14	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189862452	G	G	189862452	2	3	26	1	0	0	0	0	0	0	0	1	3720	175	7	5		5	COL3A1	2	189862452	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	5950	189862452	53336921	297	42381											
COL3A1	1281	broad.mit.edu	37	chr2	189871741	189871741	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttgtcattttttggtttTattttgttttgttctttttt	6	2	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189871741	C	C	189871741	1	2	26	0	1	0	0	0	0	0	0	0	3720	1769	61	5		5	COL3A1	2	189871741	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	9289	189871741	53327632	298	42382											
COL5A2	1290	broad.mit.edu	37	chr2	189917592	189917592	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaatgtacactccaaaCatggggcacttgactcaagt	10	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189917592	G	G	189917592	1	3	26	0	1	0	0	0	0	0	0	0	3729	493	17	4		4	COL5A2	2	189917592	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	45851	189917592	53281781	299	42383											
MYO1B	4430	broad.mit.edu	37	chr2	192226895	192226895	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattcaatacttaatataaAagccatgttaccgatgtgaa	6	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192226895	C	C	192226895	1	2	26	0	1	0	0	0	0	0	0	0	10163	29	1	5		5	MYO1B	2	192226895	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2309303	192226895	50972478	300	42384											
PLCL1	5334	broad.mit.edu	37	chr2	198949581	198949581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgttgaactcgatgtaaGtgatggttcagataatgaac	11	5	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198949581	T	T	198949581	3	4	26	1	0	0	0	0	1	0	0	0	12134	1029	36	3	1346	3	PLCL1	2	198949581	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	6722686	198949581	44249792	301	42385											
PLCL1	5334	broad.mit.edu	37	chr2	198965945	198965945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggtctctctgtatgtcGtcttcccaatgagccagttc	10	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198965945	T	T	198965945	1	4	26	0	1	0	0	0	0	0	0	0	12134	1160	40	3		3	PLCL1	2	198965945	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	16364	198965945	44233428	302	42386											
CDK15	65061	broad.mit.edu	37	chr2	202712281	202712281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttacagacaaatgaagcaGtccatctgctctgagatatt	7	10	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202712281	T	T	202712281	1	4	26	0	1	0	0	0	0	0	0	0	3161	1044	36	3		3	CDK15	2	202712281	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3746336	202712281	40487092	303	42387											
ZDBF2	57683	broad.mit.edu	37	chr2	207173670	207173670	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccaacctcaagtgtcttAcaaagaggcagaccttcaga	8	11	3	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207173670	T	T	207173670	3	4	26	1	0	0	0	0	1	0	0	0	17725	391	14	5	4428	5	ZDBF2	2	207173670	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	4461389	207173670	36025703	304	42388											
ADAM23	8745	broad.mit.edu	37	chr2	207452046	207452046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaaaaagataatattttgCagtgcccaccaaatcttcat	4	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207452046	A	A	207452046	1	1	26	0	1	0	0	0	0	0	0	0	245	725	25	3		3	ADAM23	2	207452046	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	278376	207452046	35747327	305	42389											
CPS1	1373	broad.mit.edu	37	chr2	211421526	211421526	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggttttggctttaccaatgtGactgcacaccaaaaatggaa	9	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211421526	T	T	211421526	2	4	26	1	0	0	0	0	0	0	0	1	3855	1277	45	3		3	CPS1	2	211421526	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	3969480	211421526	31777847	306	42390											
CPS1	1373	broad.mit.edu	37	chr2	211457699	211457699	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtacgtcaaaaagatgagGcctattatgtatgcaaaaaa	9	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211457699	A	A	211457699	1	1	26	0	1	0	0	0	0	0	0	0	3855	1218	42	4		4	CPS1	2	211457699	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	36173	211457699	31741674	307	42391											
CPS1	1373	broad.mit.edu	37	chr2	211504752	211504752	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattttgatgaccatggaatGatggtgctaggctgtggtcc	13	6	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211504752	A	A	211504752	3	1	26	1	0	0	0	0	1	0	0	0	3855	1290	45	4	3044	4	CPS1	2	211504752	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	47053	211504752	31694621	308	42392											
CPS1	1373	broad.mit.edu	37	chr2	211512463	211512463	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaacagtattcattggtaGgagagatgtaaatatcacag	9	4	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211512463	C	C	211512463	1	2	26	0	1	0	0	0	0	0	0	0	3855	1015	35	4		4	CPS1	2	211512463	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	7711	211512463	31686910	309	42393											
ERBB4	2066	broad.mit.edu	37	chr2	212248650	212248650	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaggtgttgaggtacagtGgctcattcacatactcatcc	9	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212248650	A	A	212248650	3	1	26	1	0	0	0	0	1	0	0	0	5251	1348	47	4	313	4	ERBB4	2	212248650	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	736187	212248650	30950723	310	42394											
SPAG16	79582	broad.mit.edu	37	chr2	214794784	214794784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaggacacagccgcgcaGtgtggtcctgcacatggcac	13	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214794784	T	T	214794784	3	4	26	1	0	0	0	0	1	0	0	0	15094	1029	36	3	1377	3	SPAG16	2	214794784	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2546134	214794784	28404589	311	42395											
BARD1	580	broad.mit.edu	37	chr2	215634076	215634076	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaattaaaaagcattaagGaaagaaaggaaaatattgag	10	1	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215634076	A	A	215634076	1	1	26	0	1	0	0	0	0	0	0	0	1317	1189	41	4		4	BARD1	2	215634076	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	839292	215634076	27565297	312	42396											
MARCH4	57574	broad.mit.edu	37	chr2	217123992	217123992	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctccccaccctgctccgGgccctcagtggtggtcatgg	11	18	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217123992	T	T	217123992	1	4	26	0	1	0	0	0	0	0	0	0	9395	1247	43	2		2	MARCH4	2	217123992	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	1489916	217123992	26075381	313	42397											
SLC11A1	6556	broad.mit.edu	37	chr2	219252212	219252212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcctagaagcgctcgtaGtattagccattacgaattgt	10	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219252212	A	A	219252212	1	1	26	0	1	0	0	0	0	0	0	0	14493	1044	36	4		4	SLC11A1	2	219252212	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2128220	219252212	23947161	314	42398											
PLCD4	84812	broad.mit.edu	37	chr2	219492736	219492736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttctcacctagtgttccCctgtccacactccaggcaaa	6	16	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219492736	A	A	219492736	1	1	26	0	1	0	0	0	0	0	0	0	12128	638	22	2		2	PLCD4	2	219492736	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	240524	219492736	23706637	315	42399											
STK36	27148	broad.mit.edu	37	chr2	219562476	219562476	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaacctaagtagtggctgaGactgtagaaggggagttggg	17	4	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219562476	T	T	219562476	1	4	26	0	1	0	0	0	0	0	0	0	15420	957	33	3		3	STK36	2	219562476	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	69740	219562476	23636897	316	42400											
PRKAG3	53632	broad.mit.edu	37	chr2	219692035	219692035	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtacgttgcctgacaccgGgtcaagaacaggcaggcgat	14	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219692035	A	A	219692035	3	1	26	1	0	0	0	0	1	0	0	0	12608	1232	43	4	552	4	PRKAG3	2	219692035	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	129559	219692035	23507338	317	42401											
ACCN4	55515	broad.mit.edu	37	chr2	220379622	220379622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactgggccgggcctgtgGcccaggcccccacggactgc	16	16	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220379622	T	T	220379622	3	4	26	1	0	0	0	0	1	0	0	0	131	1203	42	3	559	3	ACCN4	2	220379622	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	687587	220379622	22819751	318	42402											
EPHA4	2043	broad.mit.edu	37	chr2	222291250	222291250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgaagttatccttatacCggtccattttaatggcctgg	9	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222291250	A	A	222291250	3	1	26	1	0	0	0	0	1	0	0	0	5211	652	23	1	188	1	EPHA4	2	222291250	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1911628	222291250	20908123	319	42403											
PAX3	5077	broad.mit.edu	37	chr2	223158224	223158225	+	Intron	DNP	GG	AA	AA													ctgtacccctagaagacagaGggtgccagcactctaagaac							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	223158225	AA	AA	223158224	1	1	26	0	1	0	0	0	0	0	0	0	11574	1015	35	4		4	PAX3	2	223158224	Intron	DNP	GG	TCGA-05-4432-01A-01D-1265-08	866974	223158224	20041149	320	42404											
SCG2	7857	broad.mit.edu	37	chr2	224462854	224462854	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggaaggtcaagctcccGctccggttccactgatccat	9	14	1	1	rs149957287		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224462854	A	A	224462854	3	1	26	1	0	0	0	0	1	0	0	0	14003	1086	38	4	710	4	SCG2	2	224462854	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1304630	224462854	18736519	321	42405											
CUL3	8452	broad.mit.edu	37	chr2	225367913	225367913	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgtaaatttttccaaCagttgctctgtgcctgtggt	8	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225367913	G	G	225367913	1	3	26	0	1	0	0	0	0	0	0	0	4089	493	17	4		4	CUL3	2	225367913	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	905059	225367913	17831460	322	42406											
IRS1	3667	broad.mit.edu	37	chr2	227660130	227660130	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgcccacccgggtggcacTgggtgttgaggagaaagtct	16	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227660130	A	A	227660130	3	1	26	1	0	0	0	0	1	0	0	0	7910	1580	55	5	407	5	IRS1	2	227660130	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	2292217	227660130	15539243	323	42407											
COL4A4	1286	broad.mit.edu	37	chr2	227973110	227973110	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgaaagtagtgttaaattgTgtcagatctttcattttaca	7	6	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227973110	G	G	227973110	1	3	26	0	1	0	0	0	0	0	0	0	3725	1711	59	5		5	COL4A4	2	227973110	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	312980	227973110	15226263	324	42408											
COL4A4	1286	broad.mit.edu	37	chr2	227983373	227983373	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcttactagggggcctccTgggccaagagctcctcttcc	10	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227983373	A	A	227983373	2	1	26	1	0	0	0	0	0	0	0	1	3725	1567	55	5		5	COL4A4	2	227983373	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	10263	227983373	15216000	325	42409											
COL4A3	1285	broad.mit.edu	37	chr2	228157957	228157957	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaggagaaatggggcaAcctggcccacctggacattt	12	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228157957	T	T	228157957	3	4	26	1	0	0	0	0	1	0	0	0	3723	40	2	5	3411	5	COL4A3	2	228157957	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	174584	228157957	15041416	326	42410											
SPHKAP	80309	broad.mit.edu	37	chr2	229046382	229046382	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtctgtggtgctaggacCcagctcccagagtgccagac	12	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229046382	A	A	229046382	1	1	26	0	1	0	0	0	0	0	0	0	15166	638	22	2		2	SPHKAP	2	229046382	5'Flank	SNP	C	TCGA-05-4432-01A-01D-1265-08	888425	229046382	14152991	327	42411											
PID1	55022	broad.mit.edu	37	chr2	229890500	229890500	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgagcttgctctcgcactCcacggcgtggcagtccatct	10	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229890500	A	A	229890500	4	1	26	1	0	0	0	0	0	1	0	0	11977	864	30	3	155	3	PID1	2	229890500	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	844118	229890500	13308873	328	42412											
DNER	92737	broad.mit.edu	37	chr2	230282883	230282883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggtccctgcaggtggctGcattcaggcatggagcggag	17	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230282883	T	T	230282883	3	4	26	1	0	0	0	0	1	0	0	0	4707	1319	46	3	683	3	DNER	2	230282883	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	392383	230282883	12916490	329	42413											
SP110	3431	broad.mit.edu	37	chr2	231036855	231036855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttggcttcctgaagacCtcttcatcctgcagaaggtg	10	11	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231036855	A	A	231036855	3	1	26	1	0	0	0	0	1	0	0	0	15075	681	24	2	415	2	SP110	2	231036855	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	753972	231036855	12162518	330	42414											
SP140	11262	broad.mit.edu	37	chr2	231177387	231177387	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgctattcaggaaacaaaTgggaacaattgactggatta	9	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231177387	A	A	231177387	3	1	26	1	0	0	0	0	1	0	0	0	15076	1461	51	5	2815	5	SP140	2	231177387	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	140532	231177387	12021986	331	42415											
ALPP	250	broad.mit.edu	37	chr2	233244766	233244766	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctggaggtggggttgtgGgcgtagaaggtgcagcccag	21	6	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233244766	A	A	233244766	1	1	26	0	1	0	0	0	0	0	0	0	548	1247	43	4		4	ALPP	2	233244766	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2067379	233244766	9954607	332	42416											
ECEL1	9427	broad.mit.edu	37	chr2	233348980	233348980	+	Intron	DEL	G	-	-													gtccagacggacatgcatgtGggccaccaagggcaccaccc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	233348980	-	-	233348980	6	5	26	0	1	1	0	1	0	0	0	0	4931	1363	47	0		0	ECEL1	2	233348980	Intron	DEL	G	TCGA-05-4432-01A-01D-1265-08	104214	233348980	9850393	333	42417											
CHRND	1144	broad.mit.edu	37	chr2	233399022	233399022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcaaacttcattgttaaCcacatgagggaccagaacaa	10	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233399022	A	A	233399022	3	1	26	1	0	0	0	0	1	0	0	0	3425	506	18	3	1383	3	CHRND	2	233399022	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	50042	233399022	9800351	334	42418											
UGT1A8	54576	broad.mit.edu	37	chr2	234581480	234581480	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttaagaatacttcacctttgGaaattaaaaaaggattcttt	5	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234581480	A	A	234581480	1	1	26	0	1	0	0	0	0	0	0	0	17077	1189	41	4		4	UGT1A8	2	234581480	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1182458	234581480	8617893	335	42419											
UGT1A6	54578	broad.mit.edu	37	chr2	234602664	234602664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggagcagcgggaacacatAggagacctgaggctgaagtg	16	8	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234602664	G	G	234602664	1	3	26	0	1	0	0	0	0	0	0	0	17075	435	15	5		5	UGT1A6	2	234602664	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	21184	234602664	8596709	336	42420											
SH3BP4	23677	broad.mit.edu	37	chr2	235951690	235951690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacatctatgcctccgtgagGaccctgctcatggagaacat	9	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235951690	T	T	235951690	3	4	26	1	0	0	0	0	1	0	0	0	14359	1165	41	3	2283	3	SH3BP4	2	235951690	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1349026	235951690	7247683	337	42421											
LRRFIP1	9208	broad.mit.edu	37	chr2	238672084	238672084	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaacaagaaaaagaaaaaCaagaagaaaaaatccccagt	6	6	0	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238672084	T	T	238672084	2	4	26	1	0	0	0	0	0	0	0	1	9114	477	17	4		4	LRRFIP1	2	238672084	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2720394	238672084	4527289	338	42422											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239261686	239261686	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttatgtagacaaaaatgtCctgtaatttttcagttagtt	6	4	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239261686	T	T	239261686	1	4	26	0	1	0	0	0	0	0	0	0	16564	870	30	4		4	TRAF3IP1	2	239261686	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	589602	239261686	3937687	339	42423											
HDAC4	9759	broad.mit.edu	37	chr2	239974820	239974820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggctcctcttccatgggCtcctcatctggtctgtggat	12	13	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239974820	A	A	239974820	3	1	26	1	0	0	0	0	1	0	0	0	7076	796	28	3	30	3	HDAC4	2	239974820	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	713134	239974820	3224553	340	42424											
KIF1A	547	broad.mit.edu	37	chr2	241683327	241683327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggggctttgaggacagCagccccgaaccccccgaccc	13	17	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241683327	A	A	241683327	1	1	26	0	1	0	0	0	0	0	0	0	8353	725	25	3		3	KIF1A	2	241683327	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1708507	241683327	1516046	341	42425											
KIF1A	547	broad.mit.edu	37	chr2	241727624	241727624	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggtacacctgcttctgCgacgcgtagttgatgtcctc	10	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241727624	A	A	241727624	2	1	26	1	0	0	0	0	0	0	0	1	8353	755	27	3		3	KIF1A	2	241727624	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	44297	241727624	1471749	342	42426											
MTERFD2	130916	broad.mit.edu	37	chr2	242035205	242035205	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggccctccccacagacacGtgacaacagatcaaacatgc	8	15	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242035205	C	C	242035205	1	2	26	0	1	0	0	0	0	0	0	0	10014	1160	40	4		4	MTERFD2	2	242035205	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	307581	242035205	1164168	343	42427											
ANO7	50636	broad.mit.edu	37	chr2	242142826	242142826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttttccagcactgggcgCgctggggcaagtggaacaag	14	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242142826	A	A	242142826	3	1	26	1	0	0	0	0	1	0	0	0	702	768	27	3	1070	3	ANO7	2	242142826	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	107621	242142826	1056547	344	42428											
ING5	84289	broad.mit.edu	37	chr2	242663121	242663121	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggggctctgcccctggctCtgtctagtggagaagggtgt	16	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242663121	T	T	242663121	1	4	26	0	1	0	0	0	0	0	0	0	7809	928	32	4		4	ING5	2	242663121	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	520295	242663121	536252	345	42429											
CHL1	10752	broad.mit.edu	37	chr3	440099	440099	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattatatttggggaagtcTtagtcaatctatgtcctgta	9	5	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	440099	C	C	440099	1	2	26	0	1	0	0	0	0	0	0	0	3380	1624	56	5		5	CHL1	3	440099	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08		440099	197582331	346	42430											
BRPF1	7862	broad.mit.edu	37	chr3	9788023	9788023	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgagaaggtatgttccacCatggggttcccatccctgtg	11	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9788023	T	T	9788023	3	4	26	1	0	0	0	0	1	0	0	0	1529	594	21	4	3410	4	BRPF1	3	9788023	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	9347924	9788023	188234407	347	42431											
FANCD2	2177	broad.mit.edu	37	chr3	10070424	10070424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaagtatctagtcatttGttgctttatttcctgtagca	7	7	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10070424	T	T	10070424	1	4	26	0	1	0	0	0	0	0	0	0	5722	1392	48	3		3	FANCD2	3	10070424	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	282401	10070424	187952006	348	42432											
HDAC11	79885	broad.mit.edu	37	chr3	13545601	13545601	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctctctcccagaggccatCaggcggaaggtggagctgga	15	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13545601	G	G	13545601	3	3	26	1	0	0	0	0	1	0	0	0	7073	816	29	4	691	4	HDAC11	3	13545601	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	3475177	13545601	184476829	349	42433											
CHCHD4	131474	broad.mit.edu	37	chr3	14157831	14157831	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatagatacctgaaaacttGgccttggctaggaaaacatg	10	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14157831	C	C	14157831	1	2	26	0	1	0	0	0	0	0	0	0	3349	1363	47	4		4	CHCHD4	3	14157831	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	612230	14157831	183864599	350	42434											
HACL1	26061	broad.mit.edu	37	chr3	15637949	15637949	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcctacgagaaaacaacacTgggacttgagcatattggga	11	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15637949	A	A	15637949	1	1	26	0	1	0	0	0	0	0	0	0	7007	1595	55	5		5	HACL1	3	15637949	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1480118	15637949	182384481	351	42435											
EFHB	151651	broad.mit.edu	37	chr3	19959642	19959642	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaccatcaccaaacatcaTacaaataagatatttaatca	1	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19959642	C	C	19959642	1	2	26	0	1	0	0	0	0	0	0	0	4985	1421	49	5		5	EFHB	3	19959642	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	4321693	19959642	178062788	352	42436											
UBE2E2	7325	broad.mit.edu	37	chr3	23258709	23258709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaataaattgttaagaGtgaagatatttttaacataa	6	1	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23258709	T	T	23258709	1	4	26	0	1	0	0	0	0	0	0	0	16979	1044	36	3		3	UBE2E2	3	23258709	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3299067	23258709	174763721	353	42437											
ZCWPW2	152098	broad.mit.edu	37	chr3	28476564	28476564	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgatgtctacctttttaaAagcatcaaaataattacaaa	4	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28476564	T	T	28476564	1	4	26	0	1	0	0	0	0	0	0	0	17724	29	1	5		5	ZCWPW2	3	28476564	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	5217855	28476564	169545866	354	42438											
DCLK3	85443	broad.mit.edu	37	chr3	36763072	36763072	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtcccacacacagtaaAtataggtctcaccacatgct	8	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36763072	G	G	36763072	3	3	26	1	0	0	0	0	1	0	0	0	4326	101	4	5	427	5	DCLK3	3	36763072	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	8286508	36763072	161259358	355	42439											
ITGA9	3680	broad.mit.edu	37	chr3	37627075	37627075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctctagcaattatgggGgttttatctcccagatgtga	9	7	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37627075	T	T	37627075	1	4	26	0	1	0	0	0	0	0	0	0	7953	1247	43	2		2	ITGA9	3	37627075	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	864003	37627075	160395355	356	42440											
ACVR2B	93	broad.mit.edu	37	chr3	38520136	38520136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaaagtgagccttactGggcctagttactcatgttac	10	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38520136	T	T	38520136	1	4	26	0	1	0	0	0	0	0	0	0	224	1363	47	2		2	ACVR2B	3	38520136	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	893061	38520136	159502294	357	42441											
SCN5A	6331	broad.mit.edu	37	chr3	38597357	38597357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccaggattgaccacctcCtggctttctctcctggacaa	8	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38597357	A	A	38597357	1	1	26	0	1	0	0	0	0	0	0	0	14035	696	24	2		2	SCN5A	3	38597357	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	77221	38597357	159425073	358	42442											
CCR8	1237	broad.mit.edu	37	chr3	39374243	39374244	+	Missense_Mutation	DNP	GC	AA	AA													ctgttgtccatgccgtgtatGccctaaaggtgaggacgatc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	39374244	AA	AA	39374243	3	1	26	1	0	0	0	0	1	0	0	0	2977	1319	46	4	423	4	CCR8	3	39374243	Missense_Mutation	DNP	GC	TCGA-05-4432-01A-01D-1265-08	776886	39374243	158648187	359	42443											
ZNF501	115560	broad.mit.edu	37	chr3	44776034	44776034	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcatctcttacccagcacCagaggattcacagaggagag	10	11	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44776034	T	T	44776034	4	4	26	1	0	0	0	0	0	1	0	0	18076	595	21	4	123	4	ZNF501	3	44776034	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	5401791	44776034	153246396	360	42444											
KIAA1143	57456	broad.mit.edu	37	chr3	44794741	44794741	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcctaaactttctataaAgaacttgtagtatctttata	3	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44794741	C	C	44794741	1	2	26	0	1	0	0	0	0	0	0	0	8279	87	3	5		5	KIAA1143	3	44794741	3'UTR	SNP	A	TCGA-05-4432-01A-01D-1265-08	18707	44794741	153227689	361	42445											
KIAA1143	57456	broad.mit.edu	37	chr3	44794830	44794830	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactaaattcaaaatatttaCacttactcattttcatcttc	1	9	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44794830	A	A	44794830	1	1	26	0	1	0	0	0	0	0	0	0	8279	493	17	3		3	KIAA1143	3	44794830	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	89	44794830	153227600	362	42446											
TGM4	7047	broad.mit.edu	37	chr3	44951615	44951615	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcaggtcatggatcatgCcttcctccttctcagttctg	10	12	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44951615	T	T	44951615	3	4	26	1	0	0	0	0	1	0	0	0	15955	739	26	4	1403	4	TGM4	3	44951615	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	156785	44951615	153070815	363	42447											
PTH1R	5745	broad.mit.edu	37	chr3	46945140	46945140	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggaagagtgggagacagtCatgtgaccaggcgctggggg	19	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46945140	A	A	46945140	2	1	26	1	0	0	0	0	0	0	0	1	12864	813	29	3		3	PTH1R	3	46945140	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1993525	46945140	151077290	364	42448											
QARS	5859	broad.mit.edu	37	chr3	49138082	49138082	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggttggtgtcatcaaaaCgcagaaaacagatgccattg	11	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49138082	T	T	49138082	3	4	26	1	0	0	0	0	1	0	0	0	12979	536	19	4	1481	4	QARS	3	49138082	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2192942	49138082	148884348	365	42449											
LOC646498	646498	broad.mit.edu	37	chr3	49227149	49227149	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaatctgaatgtgaaggtAgttgtcagcaaaactcaagg	12	5	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49227149	T	T	49227149	1	4	26	0	1	0	0	0	0	0	0	0	8968	435	15	5		5	LOC646498	3	49227149	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	89067	49227149	148795281	366	42450											
NISCH	11188	broad.mit.edu	37	chr3	52505828	52505828	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcagggcatggctcttgcAggagaacagctcctgggggc	15	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52505828	G	G	52505828	5	3	26	1	0	0	0	0	0	0	1	0	10527	202	7	5	426	5	NISCH	3	52505828	Splice_Site	SNP	A	TCGA-05-4432-01A-01D-1265-08	3278679	52505828	145516602	367	42451											
PXK	54899	broad.mit.edu	37	chr3	58383335	58383335	+	Frame_Shift_Del	DEL	T	-	-													tactctttcttccacagacaTtggaaagtgtggatgtccac							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58383335	-	-	58383335	7	5	26	1	0	1	0	1	0	0	0	0	12957	1490	52	0	1030	0	PXK	3	58383335	Frame_Shift_Del	DEL	T	TCGA-05-4432-01A-01D-1265-08	5877507	58383335	139639095	368	42452											
ADAMTS9	56999	broad.mit.edu	37	chr3	64617237	64617237	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattgtaacctgaaaagaaTttagcagaaattcagtactc	7	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64617237	A	A	64617237	1	1	26	0	1	0	0	0	0	0	0	0	273	1508	52	5		5	ADAMTS9	3	64617237	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	6233902	64617237	133405193	369	42453											
LMOD3	56203	broad.mit.edu	37	chr3	69168667	69168667	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttttgatgtgcttgtttTtcttcattgcattgacaaag	8	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69168667	C	C	69168667	3	2	26	1	0	0	0	0	1	0	0	0	8932	1841	64	5	851	5	LMOD3	3	69168667	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	4551430	69168667	128853763	370	42454											
GPR27	2850	broad.mit.edu	37	chr3	71804249	71804249	+	Frame_Shift_Del	DEL	G	-	-													ggagctgagggactgcttcaGggcccagttcccctgctgcc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71804249	-	-	71804249	7	5	26	1	0	1	0	1	0	0	0	0	6750	1000	35	0	1051	0	GPR27	3	71804249	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	2635582	71804249	126218181	371	42455											
CNTN3	5067	broad.mit.edu	37	chr3	74316356	74316356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattcacttatacctagCttctcttgaaaagtactgcc	4	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74316356	T	T	74316356	1	4	26	0	1	0	0	0	0	0	0	0	3674	812	28	4		4	CNTN3	3	74316356	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2512107	74316356	123706074	372	42456											
GBE1	2632	broad.mit.edu	37	chr3	81626991	81626991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattctaaatctgaaaagCcaaatcaaaatattctacat	2	7	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81626991	A	A	81626991	1	1	26	0	1	0	0	0	0	0	0	0	6332	754	26	3		3	GBE1	3	81626991	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	7310635	81626991	116395439	373	42457											
CADM2	253559	broad.mit.edu	37	chr3	86010811	86010811	+	Intron	DEL	G	-	-													gtgcatggtgagtaaattttGgaaaacattatatgtgaaag							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86010811	-	-	86010811	6	5	26	0	1	1	0	1	0	0	0	0	2593	1363	47	0		0	CADM2	3	86010811	Intron	DEL	G	TCGA-05-4432-01A-01D-1265-08	4383820	86010811	112011619	374	42458											
CADM2	253559	broad.mit.edu	37	chr3	86062751	86062751	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagaaactctcagggaagaGagagaatcacacttcttttc	9	8	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86062751	A	A	86062751	1	1	26	0	1	0	0	0	0	0	0	0	2593	957	33	4		4	CADM2	3	86062751	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	51940	86062751	111959679	375	42459											
VGLL3	389136	broad.mit.edu	37	chr3	87039828	87039828	+	Frame_Shift_Del	DEL	G	-	-													gggcaggttgtcgctgccatGgggttgggcagatactggga							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87039828	-	-	87039828	7	5	26	1	0	1	0	1	0	0	0	0	17287	1335	47	0	930	0	VGLL3	3	87039828	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	977077	87039828	110982602	376	42460											
POU1F1	5449	broad.mit.edu	37	chr3	87325585	87325585	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcagaggtataaaggtatCagccgaagtaaaagcttggc	11	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87325585	A	A	87325585	3	1	26	1	0	0	0	0	1	0	0	0	12365	826	29	3	949	3	POU1F1	3	87325585	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	285757	87325585	110696845	377	42461											
C3orf38	285237	broad.mit.edu	37	chr3	88202561	88202561	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcaaaagcaaccacaactGaaattgaaggaaacgccaga	9	9	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88202561	A	A	88202561	2	1	26	1	0	0	0	0	0	0	0	1	2250	1277	45	4		4	C3orf38	3	88202561	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	876976	88202561	109819869	378	42462											
EPHA6	285220	broad.mit.edu	37	chr3	96963115	96963115	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccattcacagctattacagtGaccacggatcaagatggtaa	8	10	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96963115	T	T	96963115	2	4	26	1	0	0	0	0	0	0	0	1	5213	1277	45	3		3	EPHA6	3	96963115	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	8760554	96963115	101059315	379	42463											
OR5H14	403273	broad.mit.edu	37	chr3	97868307	97868308	+	Silent	DNP	CC	AT	AT													caaccacagtggaaaataccCctgttcctggcattcttggt					rs146669592		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	97868308	AT	AT	97868307	2	1	26	1	0	0	0	0	0	0	0	1	11254	610	22	2		2	OR5H14	3	97868307	Silent	DNP	CC	TCGA-05-4432-01A-01D-1265-08	905192	97868307	100154123	380	42464											
OR5H15	403274	broad.mit.edu	37	chr3	97887756	97887756	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttagcttttgtggatgcTtggatatcatccacagtgac	9	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97887756	C	C	97887756	2	2	26	1	0	0	0	0	0	0	0	1	11255	1596	56	5		5	OR5H15	3	97887756	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	19449	97887756	100134674	381	42465											
NIT2	56954	broad.mit.edu	37	chr3	100058049	100058049	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaatagtttctttgccGgtcagtatgggagcagccat	11	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100058049	T	T	100058049	2	4	26	1	0	0	0	0	0	0	0	1	10529	1130	39	1		1	NIT2	3	100058049	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	2170293	100058049	97964381	382	42466											
CEP97	79598	broad.mit.edu	37	chr3	101446312	101446312	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaaatttgcctcataataGcattggctgtgtggaagggc	11	6	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101446312	A	A	101446312	3	1	26	1	0	0	0	0	1	0	0	0	3293	971	34	4	282	4	CEP97	3	101446312	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1388263	101446312	96576118	383	42467											
CBLB	868	broad.mit.edu	37	chr3	105464841	105464841	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatgtaacctggatgtgtCacagctaagaaattccaatt	8	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105464841	A	A	105464841	2	1	26	1	0	0	0	0	0	0	0	1	2727	813	29	3		3	CBLB	3	105464841	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	4018529	105464841	92557589	384	42468											
KIAA1524	57650	broad.mit.edu	37	chr3	108285291	108285291	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggatgagaatcaccacaTctttcgattttttactgcct	6	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108285291	C	C	108285291	1	2	26	0	1	0	0	0	0	0	0	0	8309	1450	50	5		5	KIAA1524	3	108285291	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2820450	108285291	89737139	385	42469											
MORC1	27136	broad.mit.edu	37	chr3	108778676	108778676	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttctctttaagattcttTtgctttgcttctacatcttc	4	9	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108778676	C	C	108778676	2	2	26	1	0	0	0	0	0	0	0	1	9795	1838	64	5		5	MORC1	3	108778676	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	493385	108778676	89243754	386	42470											
GTPBP8	29083	broad.mit.edu	37	chr3	112719871	112719871	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgttttaaatgttgtgcatCtgtaacttcaggaggatcac	9	6	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112719871	G	G	112719871	1	3	26	0	1	0	0	0	0	0	0	0	6949	928	32	4		4	GTPBP8	3	112719871	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	3941195	112719871	85302559	387	42471											
ZBTB20	26137	broad.mit.edu	37	chr3	114070473	114070473	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtcaatgagcttttgcActgactgcactgacaccacc	8	12	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114070473	C	C	114070473	3	2	26	1	0	0	0	0	1	0	0	0	17655	159	6	5	1781	5	ZBTB20	3	114070473	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1350602	114070473	83951957	388	42472											
GPR156	165829	broad.mit.edu	37	chr3	119886498	119886498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagccaggaaagtgtgagCgggcccgctgagctgcccgc	16	13	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119886498	A	A	119886498	3	1	26	1	0	0	0	0	1	0	0	0	6726	768	27	3	622	3	GPR156	3	119886498	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	5816025	119886498	78135932	389	42473											
GOLGB1	2804	broad.mit.edu	37	chr3	121396085	121396085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcaatcatcatcatttGtttaaaaatttatctctgag	4	9	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121396085	T	T	121396085	1	4	26	0	1	0	0	0	0	0	0	0	6629	1392	48	3		3	GOLGB1	3	121396085	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1509587	121396085	76626345	390	42474											
CASR	846	broad.mit.edu	37	chr3	121980969	121980969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaactgccacctccaagaaGgtgcaaaaggacctttacct	7	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121980969	T	T	121980969	3	4	26	1	0	0	0	0	1	0	0	0	2708	1000	35	2	1097	2	CASR	3	121980969	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	584884	121980969	76041461	391	42475											
ADCY5	111	broad.mit.edu	37	chr3	123066664	123066664	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttctggatgtaaatcttatgGaacatcatatcctcctgctt	6	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123066664	C	C	123066664	3	2	26	1	0	0	0	0	1	0	0	0	297	1165	41	4	2490	4	ADCY5	3	123066664	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1085695	123066664	74955766	392	42476											
MYLK	4638	broad.mit.edu	37	chr3	123411574	123411574	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggcggcgatgggtgggcaCgacctaccatccacggtgac	16	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123411574	G	G	123411574	1	3	26	0	1	0	0	0	0	0	0	0	10150	551	19	4		4	MYLK	3	123411574	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	344910	123411574	74610856	393	42477											
MYLK	4638	broad.mit.edu	37	chr3	123456371	123456371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacagacacacgggcactcGgctgcagtggaacatttccc	10	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123456371	A	A	123456371	3	1	26	1	0	0	0	0	1	0	0	0	10150	1116	39	4	5244	4	MYLK	3	123456371	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	44797	123456371	74566059	394	42478											
SLC12A8	84561	broad.mit.edu	37	chr3	124837603	124837603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccttggagtagcgcaggCctcactcaccttttccgcta	9	15	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124837603	A	A	124837603	1	1	26	0	1	0	0	0	0	0	0	0	14502	754	26	3		3	SLC12A8	3	124837603	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1381232	124837603	73184827	395	42479											
ZXDC	79364	broad.mit.edu	37	chr3	126191056	126191056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatactgcttgctgcaccCaggaaaggagcaggaaaaga	11	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126191056	A	A	126191056	3	1	26	1	0	0	0	0	1	0	0	0	18381	594	21	2	1618	2	ZXDC	3	126191056	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1353453	126191056	71831374	396	42480											
DNAJC13	23317	broad.mit.edu	37	chr3	132201289	132201289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttaaattcctgttattaGctccaagggccctgcaactc	6	12	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132201289	T	T	132201289	1	4	26	0	1	0	0	0	0	0	0	0	4672	986	34	3		3	DNAJC13	3	132201289	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	6010233	132201289	65821141	397	42481											
DNAJC13	23317	broad.mit.edu	37	chr3	132220239	132220239	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtaatcctaggtattcggGaggctgagtatttggctgaa	13	6	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132220239	T	T	132220239	1	4	26	0	1	0	0	0	0	0	0	0	4672	1189	41	3		3	DNAJC13	3	132220239	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	18950	132220239	65802191	398	42482											
BFSP2	8419	broad.mit.edu	37	chr3	133129417	133129417	+	Intron	DEL	T	-	-													gcaaacggggattctccctcTcacgtatcttttccaagtgg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133129417	-	-	133129417	6	5	26	0	1	1	0	1	0	0	0	0	1422	1566	54	0		0	BFSP2	3	133129417	Intron	DEL	T	TCGA-05-4432-01A-01D-1265-08	909178	133129417	64893013	399	42483											
CLSTN2	64084	broad.mit.edu	37	chr3	140178652	140178652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacccctcctaccccagCagctgcccattttgtcacag	5	19	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140178652	A	A	140178652	1	1	26	0	1	0	0	0	0	0	0	0	3594	725	25	3		3	CLSTN2	3	140178652	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	7049235	140178652	57843778	400	42484											
C3orf58	205428	broad.mit.edu	37	chr3	143704422	143704422	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttggccatttgcaaagtAtcttggagcttgtggaagaa	13	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143704422	G	G	143704422	3	3	26	1	0	0	0	0	1	0	0	0	2258	449	16	5	735	5	C3orf58	3	143704422	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3525770	143704422	54318008	401	42485											
HPS3	84343	broad.mit.edu	37	chr3	148876276	148876276	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgttttagatatccaggtTtaaaaattccaaatttgact	5	5	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148876276	C	C	148876276	1	2	26	0	1	0	0	0	0	0	0	0	7407	1856	64	5		5	HPS3	3	148876276	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	5171854	148876276	49146154	402	42486											
SI	6476	broad.mit.edu	37	chr3	164741644	164741644	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaattatactgacgtttaGtcacacattgtatgatttac	5	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164741644	C	C	164741644	1	2	26	0	1	0	0	0	0	0	0	0	14410	1044	36	4		4	SI	3	164741644	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	15865368	164741644	33280786	403	42487											
SI	6476	broad.mit.edu	37	chr3	164767613	164767613	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggataattcaatttgtttacAttacatccttttgttgaacc	5	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164767613	T	T	164767613	3	4	26	1	0	0	0	0	1	0	0	0	14410	214	8	5	4060	5	SI	3	164767613	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	25969	164767613	33254817	404	42488											
WDR49	151790	broad.mit.edu	37	chr3	167322097	167322097	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttacctaccaattaaaTtgagccgagagtgataatca	6	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167322097	C	C	167322097	3	2	26	1	0	0	0	0	1	0	0	0	17429	1493	52	5	2054	5	WDR49	3	167322097	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	2554484	167322097	30700333	405	42489											
PDCD10	11235	broad.mit.edu	37	chr3	167401998	167401998	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggattagatcccttcaGgagggactgataatttatac	9	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167401998	A	A	167401998	1	1	26	0	1	0	0	0	0	0	0	0	11710	1015	35	4		4	PDCD10	3	167401998	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	79901	167401998	30620432	406	42490											
GOLIM4	27333	broad.mit.edu	37	chr3	167728076	167728076	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctacatttcagctcttcgaTgtgatttctcagcaactgca	7	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167728076	A	A	167728076	3	1	26	1	0	0	0	0	1	0	0	0	6630	1464	51	5	22	5	GOLIM4	3	167728076	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	326078	167728076	30294354	407	42491											
RPL22L1	200916	broad.mit.edu	37	chr3	170586192	170586192	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttctgctacataaatgaGaaataattatgtagctatat	5	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170586192	C	C	170586192	1	2	26	0	1	0	0	0	0	0	0	0	13680	957	33	4		4	RPL22L1	3	170586192	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2858116	170586192	27436238	408	42492											
ABCC5	10057	broad.mit.edu	37	chr3	183682981	183682981	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcctgtacctccgtcaGgtcgctgctgggaagaatgg	15	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183682981	A	A	183682981	2	1	26	1	0	0	0	0	0	0	0	1	56	991	35	4		4	ABCC5	3	183682981	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	13096789	183682981	14339449	409	42493											
CHRD	8646	broad.mit.edu	37	chr3	184103974	184103974	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgagtgtgggcagtggggGcagtggggagggtgcagagt	25	4	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184103974	C	C	184103974	1	2	26	0	1	0	0	0	0	0	0	0	3403	1218	42	4		4	CHRD	3	184103974	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	420993	184103974	13918456	410	42494											
MASP1	5648	broad.mit.edu	37	chr3	186961390	186961390	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcccgtgttccagctctccTggggctctacagtctacaac	9	15	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186961390	A	A	186961390	2	1	26	1	0	0	0	0	0	0	0	1	9414	1567	55	5		5	MASP1	3	186961390	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	2857416	186961390	11061040	411	42495											
DLG1	1739	broad.mit.edu	37	chr3	196807848	196807848	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcatgaataattctgaTagcaaaatccttttcatttt	4	7	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196807848	C	C	196807848	1	2	26	0	1	0	0	0	0	0	0	0	4594	1421	49	5		5	DLG1	3	196807848	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	9846458	196807848	1214582	412	42496											
ZNF595	152687	broad.mit.edu	37	chr4	53282	53282	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgttctcggctccgggagGcctcggtgattcagccacag	14	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53282	T	T	53282	1	4	26	0	1	0	0	0	0	0	0	0	18152	1218	42	3		3	ZNF595	4	53282	5'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08		53282	191100994	413	42497											
ZNF732	654254	broad.mit.edu	37	chr4	265785	265785	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaacatttgaggatgaggtAatgattttgccacattcttc	9	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	265785	T	T	265785	2	4	26	1	0	0	0	0	0	0	0	1	18252	358	13	5		5	ZNF732	4	265785	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	212503	265785	190888491	414	42498											
ZNF732	654254	broad.mit.edu	37	chr4	284291	284291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagatcctggcctcagctGtggtccctgaagcagccctg	12	14	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	284291	T	T	284291	1	4	26	0	1	0	0	0	0	0	0	0	18252	1392	48	3		3	ZNF732	4	284291	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	18506	284291	190869985	415	42499											
MAEA	10296	broad.mit.edu	37	chr4	1326672	1326672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtagggcgtgcgtccctgGggtcggtgtcatgctggggt	20	8	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1326672	T	T	1326672	1	4	26	0	1	0	0	0	0	0	0	0	9241	1247	43	2		2	MAEA	4	1326672	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1042381	1326672	189827604	416	42500											
HGFAC	3083	broad.mit.edu	37	chr4	3451122	3451122	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgaccggatacggcctccCaggcggcttgtggctccctc	12	16	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3451122	T	T	3451122	2	4	26	1	0	0	0	0	0	0	0	1	7153	581	21	4		4	HGFAC	4	3451122	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2124450	3451122	187703154	417	42501											
LYAR	55646	broad.mit.edu	37	chr4	4275962	4275962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacagagcaagactccgtcTcaaaaaaaacaaaaaaaaaa	4	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4275962	A	A	4275962	1	1	26	0	1	0	0	0	0	0	0	0	9191	1566	54	5		5	LYAR	4	4275962	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	824840	4275962	186878314	418	42502											
LYAR	55646	broad.mit.edu	37	chr4	4283637	4283637	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcgcccctttaaagtgatCaaaagttctgccattagact	6	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4283637	T	T	4283637	1	4	26	0	1	0	0	0	0	0	0	0	9191	841	29	4		4	LYAR	4	4283637	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	7675	4283637	186870639	419	42503											
SLIT2	9353	broad.mit.edu	37	chr4	20619258	20619258	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagcagtggatacacggggGacagctgtgatcgaggtaag	17	7	0	1	rs141897818	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20619258	C	C	20619258	3	2	26	1	0	0	0	0	1	0	0	0	14854	1174	41	4	4475	4	SLIT2	4	20619258	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	16335621	20619258	170535018	420	42504											
PPARGC1A	10891	broad.mit.edu	37	chr4	23814671	23814671	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacggctgtagggcgatcttGaacgtgatctcacatacaag	12	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23814671	A	A	23814671	3	1	26	1	0	0	0	0	1	0	0	0	12396	1294	45	4	545	4	PPARGC1A	4	23814671	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3195413	23814671	167339605	421	42505											
ARAP2	116984	broad.mit.edu	37	chr4	36212324	36212324	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggtatccaaatatcttccAccttgtcctcgcttattttc	5	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36212324	C	C	36212324	3	2	26	1	0	0	0	0	1	0	0	0	841	159	6	5	4051	5	ARAP2	4	36212324	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	12397653	36212324	154941952	422	42506											
GABRG1	2565	broad.mit.edu	37	chr4	46066407	46066407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttttcatttttaaataaaCagcttctaaggttaaaattc	3	6	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066407	T	T	46066407	1	4	26	0	1	0	0	0	0	0	0	0	6231	493	17	4		4	GABRG1	4	46066407	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	9854083	46066407	145087869	423	42507											
GABRG1	2565	broad.mit.edu	37	chr4	46067560	46067560	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctattgaattttaaacgactGtcaaaccaggtttgggcaaa	8	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46067560	A	A	46067560	2	1	26	1	0	0	0	0	0	0	0	1	6231	1368	48	4		4	GABRG1	4	46067560	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1153	46067560	145086716	424	42508											
GABRA2	2555	broad.mit.edu	37	chr4	46252443	46252443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtcaattttgctaacaCtgttgaaagttttctttgct	6	7	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46252443	A	A	46252443	3	1	26	1	0	0	0	0	1	0	0	0	6221	565	20	3	121	3	GABRA2	4	46252443	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	184883	46252443	144901833	425	42509											
ATP10D	57205	broad.mit.edu	37	chr4	47570994	47570994	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggttacgagctggactcatTatcactgggaagaccctgga	13	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47570994	A	A	47570994	2	1	26	1	0	0	0	0	0	0	0	1	1122	1742	61	5		5	ATP10D	4	47570994	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	1318551	47570994	143583282	426	42510											
CORIN	10699	broad.mit.edu	37	chr4	47663813	47663813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatctgtgtcttcaggccaCtgtaggcccacaatcccaag	8	14	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47663813	A	A	47663813	3	1	26	1	0	0	0	0	1	0	0	0	3784	564	20	3	1522	3	CORIN	4	47663813	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	92819	47663813	143490463	427	42511											
TXK	7294	broad.mit.edu	37	chr4	48073614	48073614	+	Frame_Shift_Del	DEL	T	-	-													tagcctgaagccttcagaaaTagcttccacgacttgcaaat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48073614	-	-	48073614	7	5	26	1	0	1	0	1	0	0	0	0	16912	1406	49	0	156	0	TXK	4	48073614	Frame_Shift_Del	DEL	T	TCGA-05-4432-01A-01D-1265-08	409801	48073614	143080662	428	42512											
TEC	7006	broad.mit.edu	37	chr4	48158716	48158716	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcactgcggaggagttgcTctgccttgcttctattcata	9	11	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48158716	A	A	48158716	3	1	26	1	0	0	0	0	1	0	0	0	15864	1551	54	5	1162	5	TEC	4	48158716	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	85102	48158716	142995560	429	42513											
FRYL	285527	broad.mit.edu	37	chr4	48559139	48559139	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccagttcatcgccatactaGatgcaatatgcacaaaagat	7	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48559139	C	C	48559139	1	2	26	0	1	0	0	0	0	0	0	0	6124	957	33	4		4	FRYL	4	48559139	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	400423	48559139	142595137	430	42514											
SPATA18	132671	broad.mit.edu	37	chr4	52946239	52946239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatacttctctgtactccaGggcaggacccactcctagag	8	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52946239	T	T	52946239	1	4	26	0	1	0	0	0	0	0	0	0	15119	1015	35	2		2	SPATA18	4	52946239	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4387100	52946239	138208037	431	42515											
SPATA18	132671	broad.mit.edu	37	chr4	52951090	52951090	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttttaagtggaattcGgtgcgatctgtaagtcgttg	11	6	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52951090	T	T	52951090	2	4	26	1	0	0	0	0	0	0	0	1	15119	1103	39	1		1	SPATA18	4	52951090	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	4851	52951090	138203186	432	42516											
SCFD2	152579	broad.mit.edu	37	chr4	54231430	54231430	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtactcctaaatgttcacAcagagaactgaggcctgaca	8	12	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54231430	C	C	54231430	3	2	26	1	0	0	0	0	1	0	0	0	14002	159	6	5	1411	5	SCFD2	4	54231430	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1280340	54231430	136922846	433	42517											
AASDH	132949	broad.mit.edu	37	chr4	57211259	57211259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccattacaggcatgcgcCaccatgcccagctaatttga	7	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57211259	A	A	57211259	1	1	26	0	1	0	0	0	0	0	0	0	22	609	21	2		2	AASDH	4	57211259	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2979829	57211259	133943017	434	42518											
LPHN3	23284	broad.mit.edu	37	chr4	62775373	62775373	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatcacctactctgtccgGgccatggaccagctggtagg	12	13	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62775373	T	T	62775373	2	4	26	1	0	0	0	0	0	0	0	1	9004	1219	43	2		2	LPHN3	4	62775373	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	5564114	62775373	128378903	435	42519											
TECRL	253017	broad.mit.edu	37	chr4	65146765	65146765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctaggtcttacctggcaGtgtttgtgtcatgactgtga	11	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65146765	T	T	65146765	3	4	26	1	0	0	0	0	1	0	0	0	15868	1020	36	3	141	3	TECRL	4	65146765	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2371392	65146765	126007511	436	42520											
EPHA5	2044	broad.mit.edu	37	chr4	66217099	66217099	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttagaaatgcactctgttaGatcttacccttgtggtgtag	9	7	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66217099	T	T	66217099	1	4	26	0	1	0	0	0	0	0	0	0	5212	957	33	3		3	EPHA5	4	66217099	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1070334	66217099	124937177	437	42521											
EPHA5	2044	broad.mit.edu	37	chr4	66217326	66217326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcgtttttctgtaaagaCaatgtagaaatattagtcta	6	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66217326	A	A	66217326	1	1	26	0	1	0	0	0	0	0	0	0	5212	493	17	3		3	EPHA5	4	66217326	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	227	66217326	124936950	438	42522											
UBA6	55236	broad.mit.edu	37	chr4	68499973	68499973	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttacctgtaagacttctTctgcagatgaataggtttgc	8	7	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68499973	G	G	68499973	3	3	26	1	0	0	0	0	1	0	0	0	16958	1783	62	5	1206	5	UBA6	4	68499973	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	2282647	68499973	122654303	439	42523											
UGT2A3	79799	broad.mit.edu	37	chr4	69796477	69796477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataaaagctttggttttgGgatgacctagtatgtaaatt	10	3	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69796477	T	T	69796477	3	4	26	1	0	0	0	0	1	0	0	0	17081	1232	43	2	500	2	UGT2A3	4	69796477	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1296504	69796477	121357799	440	42524											
UGT2B10	7365	broad.mit.edu	37	chr4	69874726	69874726	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcccaccatagggatccCatggtagattgtctcgtaga	10	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69874726	T	T	69874726	3	4	26	1	0	0	0	0	1	0	0	0	17082	594	21	4	2049	4	UGT2B10	4	69874726	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	78249	69874726	121279550	441	42525											
UGT2B10	7365	broad.mit.edu	37	chr4	69879759	69879759	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accttttgtgggatcttggcAagggctgttgcaattacatt	11	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69879759	T	T	69879759	2	4	26	1	0	0	0	0	0	0	0	1	17082	117	5	5		5	UGT2B10	4	69879759	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	5033	69879759	121274517	442	42526											
UGT2B11	10720	broad.mit.edu	37	chr4	70066153	70066153	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagcttcaaatgtcagaCataactaatctctttttccc	3	12	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70066153	T	T	70066153	1	4	26	0	1	0	0	0	0	0	0	0	17083	493	17	4		4	UGT2B11	4	70066153	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	186394	70066153	121088123	443	42527											
UGT2B28	54490	broad.mit.edu	37	chr4	70160485	70160485	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttttgtctgttttgtttCtggaagtttgctagaaaagg	11	3	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70160485	T	T	70160485	2	4	26	1	0	0	0	0	0	0	0	1	17086	912	32	4		4	UGT2B28	4	70160485	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	94332	70160485	120993791	444	42528											
UGT2A1	10941	broad.mit.edu	37	chr4	70460881	70460881	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttccccacagtcttaccAagaagatcattctggggtat	7	11	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70460881	G	G	70460881	2	3	26	1	0	0	0	0	0	0	0	1	17079	144	5	5		5	UGT2A1	4	70460881	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	300396	70460881	120693395	445	42529											
CSN2	1447	broad.mit.edu	37	chr4	70822918	70822918	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttttaattcatttactcTacatttattcttttattcta	0	6	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70822918	C	C	70822918	1	2	26	0	1	0	0	0	0	0	0	0	3982	1537	53	5		5	CSN2	4	70822918	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	362037	70822918	120331358	446	42530											
ODAM	54959	broad.mit.edu	37	chr4	71068126	71068126	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actaatgttcattttaatatCaactctgttgtaattccatc	3	8	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71068126	G	G	71068126	1	3	26	0	1	0	0	0	0	0	0	0	10919	841	29	4		4	ODAM	4	71068126	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	245208	71068126	120086150	447	42531											
ANKRD17	26057	broad.mit.edu	37	chr4	73987474	73987474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagctaacaatagctccacCacctgaaaataaaatagaaa	5	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73987474	A	A	73987474	2	1	26	1	0	0	0	0	0	0	0	1	646	581	21	2		2	ANKRD17	4	73987474	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2919348	73987474	117166802	448	42532											
ANKRD17	26057	broad.mit.edu	37	chr4	74008402	74008402	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatgagccaaaagtagttcCaccactgccagatgaccccc	7	16	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74008402	G	G	74008402	2	3	26	1	0	0	0	0	0	0	0	1	646	581	21	4		4	ANKRD17	4	74008402	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	20928	74008402	117145874	449	42533											
AFP	174	broad.mit.edu	37	chr4	74303031	74303031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcttaaaagcacaaaagCaatttggacaatttcaagaa	6	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74303031	A	A	74303031	1	1	26	0	1	0	0	0	0	0	0	0	363	725	25	3		3	AFP	4	74303031	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	294629	74303031	116851245	450	42534											
CXCL1	2919	broad.mit.edu	37	chr4	74735400	74735400	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctaggagcgtccgtggccActgaactgcgctgccagtgc	13	15	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74735400	G	G	74735400	3	3	26	1	0	0	0	0	1	0	0	0	4110	159	6	5	121	5	CXCL1	4	74735400	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	432369	74735400	116418876	451	42535											
PARM1	25849	broad.mit.edu	37	chr4	75937542	75937542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaatacctgtgaaaatGctgtaaaacagctgtgggta	11	5	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75937542	T	T	75937542	1	4	26	0	1	0	0	0	0	0	0	0	11546	1334	46	3		3	PARM1	4	75937542	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1202142	75937542	115216734	452	42536											
CCDC158	339965	broad.mit.edu	37	chr4	77304924	77304924	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagacactgatttagttaCtggtaaatataaggcttgga	10	4	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77304924	A	A	77304924	1	1	26	0	1	0	0	0	0	0	0	0	2817	580	20	3		3	CCDC158	4	77304924	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1367382	77304924	113849352	453	42537											
FRAS1	80144	broad.mit.edu	37	chr4	79294094	79294094	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctcagaaggaaacagtgGcaagtttccccttctggctt	10	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79294094	T	T	79294094	1	4	26	0	1	0	0	0	0	0	0	0	6102	1218	42	3		3	FRAS1	4	79294094	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1989170	79294094	111860182	454	42538											
C4orf22	255119	broad.mit.edu	37	chr4	81308395	81308395	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggggtaagtccttgttgcaGaagtggccggggtagctcag	18	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81308395	T	T	81308395	1	4	26	0	1	0	0	0	0	0	0	0	2278	957	33	3		3	C4orf22	4	81308395	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2014301	81308395	109845881	455	42539											
BMP3	651	broad.mit.edu	37	chr4	81967195	81967195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatatcactcaactcttgaGgaaggccaaagaaaatgaag	9	7	3	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81967195	T	T	81967195	3	4	26	1	0	0	0	0	1	0	0	0	1467	1000	35	2	626	2	BMP3	4	81967195	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	658800	81967195	109187081	456	42540											
SEC31A	22872	broad.mit.edu	37	chr4	83784652	83784652	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattaaaaatatctgaagtCtacattctaaagattcactg	4	6	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83784652	G	G	83784652	1	3	26	0	1	0	0	0	0	0	0	0	14111	928	32	4		4	SEC31A	4	83784652	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1817457	83784652	107369624	457	42541											
FAM175A	84142	broad.mit.edu	37	chr4	84391519	84391519	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtcatgatctgatctgaatGacgacggaatttgtaccaac	9	9	3	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84391519	C	C	84391519	3	2	26	1	0	0	0	0	1	0	0	0	5542	1290	45	4	936	4	FAM175A	4	84391519	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	606867	84391519	106762757	458	42542											
CDS1	1040	broad.mit.edu	37	chr4	85525672	85525672	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatatccgaggtatagttcTatgtatttaatgtgtatcca	7	5	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85525672	C	C	85525672	1	2	26	0	1	0	0	0	0	0	0	0	3207	1537	53	5		5	CDS1	4	85525672	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1134153	85525672	105628604	459	42543											
MAPK10	5602	broad.mit.edu	37	chr4	87023015	87023015	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactcttcctcttaaagcatTtgaattgtaatcctagagaa	5	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87023015	G	G	87023015	1	3	26	0	1	0	0	0	0	0	0	0	9364	1856	64	5		5	MAPK10	4	87023015	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1497343	87023015	104131261	460	42544											
IBSP	3381	broad.mit.edu	37	chr4	88732482	88732482	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttacatttttcacagctAgatttgggttctttcaaacg	6	7	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88732482	G	G	88732482	1	3	26	0	1	0	0	0	0	0	0	0	7545	435	15	5		5	IBSP	4	88732482	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1709467	88732482	102421794	461	42545											
HERC5	51191	broad.mit.edu	37	chr4	89415296	89415296	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactcataatactttaagAtttttttttcgcttttcagc	3	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89415296	G	G	89415296	1	3	26	0	1	0	0	0	0	0	0	0	7128	348	12	5		5	HERC5	4	89415296	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	682814	89415296	101738980	462	42546											
SNCA	6622	broad.mit.edu	37	chr4	90756855	90756855	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaccacactggaaaacatAaaatacactttgaatgagaa	5	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90756855	G	G	90756855	1	3	26	0	1	0	0	0	0	0	0	0	14954	377	13	5		5	SNCA	4	90756855	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1341559	90756855	100397421	463	42547											
GRID2	2895	broad.mit.edu	37	chr4	94343933	94343933	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatgtaggaagaacctttTgtgatggtctctgaaaatgt	10	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94343933	C	C	94343933	2	2	26	1	0	0	0	0	0	0	0	1	6838	1809	63	5		5	GRID2	4	94343933	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	3587078	94343933	96810343	464	42548											
UNC5C	8633	broad.mit.edu	37	chr4	96106531	96106531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaaagcccctcccattttGtatgggaccagaccctaata	6	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96106531	T	T	96106531	1	4	26	0	1	0	0	0	0	0	0	0	17119	1392	48	3		3	UNC5C	4	96106531	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1762598	96106531	95047745	465	42549											
PDHA2	5161	broad.mit.edu	37	chr4	96762021	96762021	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagccagccctgattaCtacaagaggggcaattttat	10	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96762021	G	G	96762021	4	3	26	1	0	0	0	0	0	1	0	0	11759	576	20	4	722	4	PDHA2	4	96762021	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	655490	96762021	94392255	466	42550											
ADH1B	125	broad.mit.edu	37	chr4	100237263	100237263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgcagggtcccccgaGgattgcctagactgggcagt	13	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100237263	T	T	100237263	3	4	26	1	0	0	0	0	1	0	0	0	308	1000	35	2	788	2	ADH1B	4	100237263	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3475242	100237263	90917013	467	42551											
PPP3CA	5530	broad.mit.edu	37	chr4	102004306	102004306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagttctggaaaatggaCaatgcatggtttttataaat	10	3	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102004306	A	A	102004306	1	1	26	0	1	0	0	0	0	0	0	0	12498	493	17	3		3	PPP3CA	4	102004306	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1767043	102004306	89149970	468	42552											
NPNT	255743	broad.mit.edu	37	chr4	106861316	106861316	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggagctacatctgcaagtGtcataaaggcttcgatctca	10	9	3	0	rs144069851	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106861316	C	C	106861316	3	2	26	1	0	0	0	0	1	0	0	0	10685	1377	48	4	761	4	NPNT	4	106861316	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4857010	106861316	84292960	469	42553											
PAPSS1	9061	broad.mit.edu	37	chr4	108552980	108552980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacaatgtaaaagttggCtcctgcaaccatccgtgctc	7	13	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108552980	A	A	108552980	3	1	26	1	0	0	0	0	1	0	0	0	11528	797	28	3	339	3	PAPSS1	4	108552980	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1691664	108552980	82601296	470	42554											
AGXT2L1	64850	broad.mit.edu	37	chr4	109672168	109672168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggattcagcaataaaggCagcaatctatacaagagaag	9	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109672168	A	A	109672168	3	1	26	1	0	0	0	0	1	0	0	0	406	710	25	3	902	3	AGXT2L1	4	109672168	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1119188	109672168	81482108	471	42555											
ENPEP	2028	broad.mit.edu	37	chr4	111470659	111470659	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaagtgcttaaggccctgGatttgtgtttgtttgttttt	11	4	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111470659	T	T	111470659	1	4	26	0	1	0	0	0	0	0	0	0	5170	1189	41	3		3	ENPEP	4	111470659	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1798491	111470659	79683617	472	42556											
NDST4	64579	broad.mit.edu	37	chr4	115760594	115760594	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgcataccatccaggtacTaggcatcttctctgcaaagt	7	12	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115760594	C	C	115760594	2	2	26	1	0	0	0	0	0	0	0	1	10353	1509	53	5		5	NDST4	4	115760594	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	4289935	115760594	75393682	473	42557											
NDST4	64579	broad.mit.edu	37	chr4	115760749	115760749	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttagattttttttaatgcCtgtgtagatatgcatatgtg	9	3	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115760749	T	T	115760749	1	4	26	0	1	0	0	0	0	0	0	0	10353	696	24	4		4	NDST4	4	115760749	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	155	115760749	75393527	474	42558											
KIAA1109	84162	broad.mit.edu	37	chr4	123155942	123155942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaggttgtggtttttatGgccagatgatatcctgaaga	12	4	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123155942	T	T	123155942	3	4	26	1	0	0	0	0	1	0	0	0	8278	1357	47	2	3436	2	KIAA1109	4	123155942	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	7395193	123155942	67998334	475	42559											
FAT4	79633	broad.mit.edu	37	chr4	126412916	126412916	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatggggaagcagaacagtAtgtgtgaagtttatgtactg	14	3	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126412916	G	G	126412916	3	3	26	1	0	0	0	0	1	0	0	0	5749	449	16	5	15005	5	FAT4	4	126412916	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3256974	126412916	64741360	476	42560											
INTU	27152	broad.mit.edu	37	chr4	128577741	128577741	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttccaattctagacctctaTggtttttagatattcataaa	5	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128577741	C	C	128577741	1	2	26	0	1	0	0	0	0	0	0	0	7856	1479	51	5		5	INTU	4	128577741	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2164825	128577741	62576535	477	42561											
PCDH10	57575	broad.mit.edu	37	chr4	134072018	134072018	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactcaccatccgagtgctGgactccaatgacaatgtgcc	8	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134072018	T	T	134072018	2	4	26	1	0	0	0	0	0	0	0	1	11601	1335	47	2		2	PCDH10	4	134072018	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	5494277	134072018	57082258	478	42562											
PCDH10	57575	broad.mit.edu	37	chr4	134072783	134072783	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggatgagggcgccaacgcCcagcttgcctactctatcct	11	15	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134072783	A	A	134072783	2	1	26	1	0	0	0	0	0	0	0	1	11601	610	22	2		2	PCDH10	4	134072783	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	765	134072783	57081493	479	42563											
PCDH10	57575	broad.mit.edu	37	chr4	134073068	134073068	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgcgtgaggtgctgccCcgctcggcggagccgggtta	17	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134073068	A	A	134073068	2	1	26	1	0	0	0	0	0	0	0	1	11601	610	22	2		2	PCDH10	4	134073068	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	285	134073068	57081208	480	42564											
ELF2	1998	broad.mit.edu	37	chr4	139981626	139981626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattttttccactgcgaaCagaggatgctgctttcagga	10	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139981626	A	A	139981626	3	1	26	1	0	0	0	0	1	0	0	0	5096	478	17	3	780	3	ELF2	4	139981626	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	5908558	139981626	51172650	481	42565											
OTUD4	54726	broad.mit.edu	37	chr4	146059084	146059085	+	Frame_Shift_Ins	INS	-	T	T													agggatggaagccaatgccgINStatctgcctttcgtgtctgg					rs138021807	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146059085	T	T	146059084	7	5	26	1	0	1	1	0	0	0	0	0	11408	1145	40	0	505	0	OTUD4	4	146059084	Frame_Shift_Ins	INS	-	TCGA-05-4432-01A-01D-1265-08	6077458	146059084	45095192	482	42566											
NR3C2	4306	broad.mit.edu	37	chr4	149357469	149357469	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacacatgatagggctttTaacaacggcgcgcatgacgc	11	10	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149357469	A	A	149357469	4	1	26	1	0	0	0	0	0	1	0	0	10726	1763	61	5	2442	5	NR3C2	4	149357469	Nonsense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3298385	149357469	41796807	483	42567											
MAB21L2	10586	broad.mit.edu	37	chr4	151504393	151504393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctcgaggtcatttcgcCcaccgaatttgaggtggtgc	15	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151504393	A	A	151504393	3	1	26	1	0	0	0	0	1	0	0	0	9230	623	22	2	214	2	MAB21L2	4	151504393	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2146924	151504393	39649883	484	42568											
LRBA	987	broad.mit.edu	37	chr4	151792628	151792628	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaattacacaaaaagaaatCatcaaatgtagagcttttct	5	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151792628	T	T	151792628	1	4	26	0	1	0	0	0	0	0	0	0	9018	841	29	4		4	LRBA	4	151792628	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	288235	151792628	39361648	485	42569											
PET112L	5188	broad.mit.edu	37	chr4	152682149	152682149	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgccattgtaactccagggtCttggtcaggtgactcagcct	11	12	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152682149	A	A	152682149	1	1	26	0	1	0	0	0	0	0	0	0	11828	928	32	3		3	PET112L	4	152682149	5'Flank	SNP	C	TCGA-05-4432-01A-01D-1265-08	889521	152682149	38472127	486	42570											
LRAT	9227	broad.mit.edu	37	chr4	155670387	155670387	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgagaaaaatgtgacccGtaacactgtgttctggataa	9	6	1	2	rs145519008	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155670387	T	T	155670387	1	4	26	0	1	0	0	0	0	0	0	0	9017	1160	40	3		3	LRAT	4	155670387	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	2988238	155670387	35483889	487	42571											
NPY2R	4887	broad.mit.edu	37	chr4	156135336	156135336	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatcaaattcaagagcatgcGcacagtaaccaactttttca	6	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156135336	C	C	156135336	3	2	26	1	0	0	0	0	1	0	0	0	10704	1087	38	4	247	4	NPY2R	4	156135336	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	464949	156135336	35018940	488	42572											
MARCH1	55016	broad.mit.edu	37	chr4	164534637	164534637	+	Intron	SNP	C	T	T													acatatttaaaaaattacaaCaaacgtggctgctggtcatg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164534637	T	T	164534637	1	4	26	0	1	0	0	0	0	0	0	0	9390	478	17	4		4	MARCH1	4	164534637	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	8399301	164534637	26619639	489	42573	220	2									
MARCH1	55016	broad.mit.edu	37	chr4	164534642	164534642	+	Intron	SNP	G	T	T													tttaaaaaattacaacaaacGtggctgctggtcatgttgct							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164534642	T	T	164534642	1	4	26	0	1	0	0	0	0	0	0	0	9390	1136	40	3		3	MARCH1	4	164534642	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	5	164534642	26619634	490	42574	220	2									
TRIM60	166655	broad.mit.edu	37	chr4	165961173	165961173	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtttgcgctctacggaggCaggactgatcaaagggaggt	17	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165961173	T	T	165961173	1	4	26	0	1	0	0	0	0	0	0	0	16660	725	25	4		4	TRIM60	4	165961173	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1426531	165961173	25193103	491	42575											
SPOCK3	50859	broad.mit.edu	37	chr4	168155034	168155034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttccctaaacccctctcCtcagaaaacggagcccactc	5	18	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168155034	A	A	168155034	1	1	26	0	1	0	0	0	0	0	0	0	15199	696	24	2		2	SPOCK3	4	168155034	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2193861	168155034	22999242	492	42576											
MORF4	10934	broad.mit.edu	37	chr4	174537438	174537438	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgcatactccttattatcTgtgtttccatgagatttctt	5	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174537438	A	A	174537438	2	1	26	1	0	0	0	0	0	0	0	1	9799	1567	55	5		5	MORF4	4	174537438	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	6382404	174537438	16616838	493	42577											
SPCS3	60559	broad.mit.edu	37	chr4	177241368	177241368	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacgtctcgcggatcatGctgtgagtgaggccgggccg	16	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177241368	C	C	177241368	3	2	26	1	0	0	0	0	1	0	0	0	15141	1319	46	4	143	4	SPCS3	4	177241368	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2703930	177241368	13912908	494	42578											
WWC2	80014	broad.mit.edu	37	chr4	184171164	184171164	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtaatgacagagaagctGttttgtgcatggctcaaaca	11	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184171164	C	C	184171164	1	2	26	0	1	0	0	0	0	0	0	0	17539	1392	48	4		4	WWC2	4	184171164	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	6929796	184171164	6983112	495	42579											
WWC2	80014	broad.mit.edu	37	chr4	184190176	184190176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgatgtcagctgtctgtttCgcacaaaagttcatccgccc	8	13	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184190176	A	A	184190176	3	1	26	1	0	0	0	0	1	0	0	0	17539	884	31	3	2318	3	WWC2	4	184190176	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	19012	184190176	6964100	496	42580											
MLF1IP	79682	broad.mit.edu	37	chr4	185650301	185650301	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctaaggaagcaatccttaTgcatggggtgatggattcac	12	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185650301	C	C	185650301	1	2	26	0	1	0	0	0	0	0	0	0	9708	1479	51	5		5	MLF1IP	4	185650301	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1460125	185650301	5503975	497	42581											
ANKRD37	353322	broad.mit.edu	37	chr4	186320857	186320857	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaccctgacaggaatgatTgtgttgccgtgctcagacag	11	10	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186320857	A	A	186320857	3	1	26	1	0	0	0	0	1	0	0	0	667	1812	63	5	420	5	ANKRD37	4	186320857	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	670556	186320857	4833419	498	42582											
ZFP42	132625	broad.mit.edu	37	chr4	188924650	188924650	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagcgttcgttgagagctCaaaactaaagagacatttcc	9	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188924650	T	T	188924650	3	4	26	1	0	0	0	0	1	0	0	0	17776	838	29	4	691	4	ZFP42	4	188924650	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2603793	188924650	2229626	499	42583											
SLC9A3	6550	broad.mit.edu	37	chr5	482784	482784	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggccccgcgcaggcccCcgtaggacaggaccacctgg	13	19	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	482784	T	T	482784	3	4	26	1	0	0	0	0	1	0	0	0	14827	623	22	4	1313	4	SLC9A3	5	482784	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08		482784	180432476	500	42584											
ZDHHC11	79844	broad.mit.edu	37	chr5	850557	850557	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaagatcccgaaggtggccGaggaaaggcccacgaagaca	14	10	0	3	rs145802626		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	850557	A	A	850557	3	1	26	1	0	0	0	0	1	0	0	0	17727	1059	37	4	1125	4	ZDHHC11	5	850557	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	367773	850557	180064703	501	42585											
BRD9	65980	broad.mit.edu	37	chr5	870664	870664	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaactccagaacagagctGctgctgtctcctagggtgtc	11	11	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	870664	A	A	870664	2	1	26	1	0	0	0	0	0	0	0	1	1516	1310	46	4		4	BRD9	5	870664	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	20107	870664	180044596	502	42586											
ADAMTS16	170690	broad.mit.edu	37	chr5	5190192	5190192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgaccacgccatcttaCtgactggtctggatatatgt	9	10	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5190192	A	A	5190192	3	1	26	1	0	0	0	0	1	0	0	0	261	564	20	3	1182	3	ADAMTS16	5	5190192	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4319528	5190192	175725068	503	42587											
SEMA5A	9037	broad.mit.edu	37	chr5	9122842	9122842	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcggggccgggctgtcgcaGgagcgggttcgacagaggca	20	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9122842	A	A	9122842	2	1	26	1	0	0	0	0	0	0	0	1	14150	987	35	4		4	SEMA5A	5	9122842	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	3932650	9122842	171792418	504	42588											
ROPN1L	83853	broad.mit.edu	37	chr5	10442407	10442408	+	Frame_Shift_Ins	INS	-	G	G													gacgtgctgcggtggtccgcINSggggtaagcgcccttggccc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10442408	G	G	10442407	7	5	26	1	0	1	1	0	0	0	0	0	13636	768	27	0	130	0	ROPN1L	5	10442407	Frame_Shift_Ins	INS	-	TCGA-05-4432-01A-01D-1265-08	1319565	10442407	170472853	505	42589											
CTNND2	1501	broad.mit.edu	37	chr5	11111212	11111212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactagcactcagcactccAttcttccacctggaaaggcc	6	15	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11111212	G	G	11111212	1	3	26	0	1	0	0	0	0	0	0	0	4054	232	8	5		5	CTNND2	5	11111212	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	668805	11111212	169804048	506	42590											
DNAH5	1767	broad.mit.edu	37	chr5	13824339	13824339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcatgtcccgtagtacaCgcatgacaatcgtggactcc	9	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13824339	A	A	13824339	3	1	26	1	0	0	0	0	1	0	0	0	4644	536	19	3	7490	3	DNAH5	5	13824339	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2713127	13824339	167090921	507	42591											
FBXL7	23194	broad.mit.edu	37	chr5	15928063	15928063	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgatatgtccaccgaatctCccaggatttcagaatggaag	9	10	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928063	A	A	15928063	2	1	26	1	0	0	0	0	0	0	0	1	5781	842	30	3		3	FBXL7	5	15928063	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2103724	15928063	164987197	508	42592											
MYO10	4651	broad.mit.edu	37	chr5	16676118	16676118	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcatggtctctgaggagtCggggtggagctctggactta	15	7	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16676118	A	A	16676118	1	1	26	0	1	0	0	0	0	0	0	0	10156	899	31	3		3	MYO10	5	16676118	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	748055	16676118	164239142	509	42593											
CDH12	1010	broad.mit.edu	37	chr5	21882851	21882851	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaccttttagccgatgctgTggccgttacaatggagccaa	11	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21882851	A	A	21882851	1	1	26	0	1	0	0	0	0	0	0	0	3128	1711	59	5		5	CDH12	5	21882851	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	5206733	21882851	159032409	510	42594											
PRDM9	56979	broad.mit.edu	37	chr5	23509888	23509888	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggatattgaccatgcagaGgtcacatcttgaccttgttc	10	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509888	A	A	23509888	1	1	26	0	1	0	0	0	0	0	0	0	12569	1015	35	4		4	PRDM9	5	23509888	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1627037	23509888	157405372	511	42595											
C5orf22	55322	broad.mit.edu	37	chr5	31545876	31545877	+	Intron	DNP	TA	GT	GT													tgtaaagacaattttctgggTagaagaatttcctttttgtt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	31545877	GT	GT	31545876	1	3	26	0	1	0	0	0	0	0	0	0	2308	1653	57	5		5	C5orf22	5	31545876	Intron	DNP	TA	TCGA-05-4432-01A-01D-1265-08	8035988	31545876	149369384	512	42596											
ADAMTS12	81792	broad.mit.edu	37	chr5	33891834	33891834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataaagaagagtcactaaCcttgcctcctgtccgggaag	9	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33891834	A	A	33891834	1	1	26	0	1	0	0	0	0	0	0	0	257	521	18	3		3	ADAMTS12	5	33891834	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2345958	33891834	147023426	513	42597											
NIPBL	25836	broad.mit.edu	37	chr5	36985213	36985213	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataagttagaaactaaagTtgagacccaaacagaagaac	7	6	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36985213	C	C	36985213	3	2	26	1	0	0	0	0	1	0	0	0	10523	1725	60	5	1965	5	NIPBL	5	36985213	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3093379	36985213	143930047	514	42598											
EGFLAM	133584	broad.mit.edu	37	chr5	38370435	38370435	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggacctcaatccatgagCggatccagatggactccatg	11	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38370435	T	T	38370435	3	4	26	1	0	0	0	0	1	0	0	0	5006	759	27	4	605	4	EGFLAM	5	38370435	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1385222	38370435	142544825	515	42599											
EGFLAM	133584	broad.mit.edu	37	chr5	38445800	38445800	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtgtgggaactactgcctCaatagtaagtacagtaagtc	11	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38445800	G	G	38445800	2	3	26	1	0	0	0	0	0	0	0	1	5006	841	29	4		4	EGFLAM	5	38445800	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	75365	38445800	142469460	516	42600											
FYB	2533	broad.mit.edu	37	chr5	39169741	39169741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggattacctgaggtcaggaGttcgagaccagtctggccaa	13	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39169741	T	T	39169741	1	4	26	0	1	0	0	0	0	0	0	0	6184	1044	36	3		3	FYB	5	39169741	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	723941	39169741	141745519	517	42601											
C7	730	broad.mit.edu	37	chr5	40955403	40955403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgactgtttccatagtttGgctttttccaggatgtcata	8	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40955403	T	T	40955403	1	4	26	0	1	0	0	0	0	0	0	0	2400	1363	47	2		2	C7	5	40955403	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1785662	40955403	139959857	518	42602											
HEATR7B2	133558	broad.mit.edu	37	chr5	41009954	41009954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctatcttgctctcaaaccGtaaatccctccccagtgcct	5	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41009954	T	T	41009954	1	4	26	0	1	0	0	0	0	0	0	0	7102	1160	40	3		3	HEATR7B2	5	41009954	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	54551	41009954	139905306	519	42603											
C6	729	broad.mit.edu	37	chr5	41154927	41154927	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagcaaatgagcccttcTatttattttctgcttcacaa	4	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41154927	C	C	41154927	1	2	26	0	1	0	0	0	0	0	0	0	2338	1537	53	5		5	C6	5	41154927	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	144973	41154927	139760333	520	42604											
OXCT1	5019	broad.mit.edu	37	chr5	41853477	41853477	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacggagaaaaaaggaattTttaaagtaagttagtattat	8	3	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41853477	C	C	41853477	1	2	26	0	1	0	0	0	0	0	0	0	11423	1856	64	5		5	OXCT1	5	41853477	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	698550	41853477	139061783	521	42605											
DDX4	54514	broad.mit.edu	37	chr5	55034894	55034894	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtttagttattaaatgctAcggattttatcaaagttgaa	7	3	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55034894	G	G	55034894	1	3	26	0	1	0	0	0	0	0	0	0	4393	406	14	5		5	DDX4	5	55034894	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	13181417	55034894	125880366	522	42606											
CCDC125	202243	broad.mit.edu	37	chr5	68609550	68609550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtatctccttgccctcccCttcaggatgatgttcttctt	6	14	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68609550	A	A	68609550	1	1	26	0	1	0	0	0	0	0	0	0	2787	696	24	2		2	CCDC125	5	68609550	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	13574656	68609550	112305710	523	42607											
MARVELD2	153562	broad.mit.edu	37	chr5	68716134	68716134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttgtatatggccgcaGccatagtctatgtgaatgat	9	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68716134	T	T	68716134	3	4	26	1	0	0	0	0	1	0	0	0	9410	971	34	3	924	3	MARVELD2	5	68716134	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	106584	68716134	112199126	524	42608											
POC5	134359	broad.mit.edu	37	chr5	74988161	74988161	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaactataataagtgatccTgagcacttctgaattcagaa	6	8	2	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74988161	C	C	74988161	1	2	26	0	1	0	0	0	0	0	0	0	12272	1595	55	5		5	POC5	5	74988161	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	6272027	74988161	105927099	525	42609											
FAM81B	153643	broad.mit.edu	37	chr5	94727200	94727200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaataaagctggaaaagCaagcatcatgagttcaggta	9	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94727200	A	A	94727200	3	1	26	1	0	0	0	0	1	0	0	0	5682	710	25	3	109	3	FAM81B	5	94727200	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	19739039	94727200	86188060	526	42610											
AQPEP	206338	broad.mit.edu	37	chr5	115351168	115351168	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttataggaattaaattaaTaaaggaaaaaaaatagaaat	6	0	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115351168	A	A	115351168	1	1	26	0	1	0	0	0	0	0	0	0	836	1421	49	5		5	AQPEP	5	115351168	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	20623968	115351168	65564092	527	42611											
FBN2	2201	broad.mit.edu	37	chr5	127624376	127624376	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacatgtaaccctggcatcCcttgggccttggctggctgg	13	13	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127624376	T	T	127624376	1	4	26	0	1	0	0	0	0	0	0	0	5760	638	22	4		4	FBN2	5	127624376	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	12273208	127624376	53290884	528	42612											
FBN2	2201	broad.mit.edu	37	chr5	127644818	127644818	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacagaaccatatgatgctCttgggaatttttggaactga	9	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127644818	T	T	127644818	1	4	26	0	1	0	0	0	0	0	0	0	5760	928	32	4		4	FBN2	5	127644818	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	20442	127644818	53270442	529	42613											
FBN2	2201	broad.mit.edu	37	chr5	127712286	127712286	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctagaaagctttagacaCctgccttagtgaattagcaa	7	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127712286	T	T	127712286	1	4	26	0	1	0	0	0	0	0	0	0	5760	522	18	4		4	FBN2	5	127712286	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	67468	127712286	53202974	530	42614											
SLC27A6	28965	broad.mit.edu	37	chr5	128326163	128326163	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaacaatctaaggtaggCgtaatcattatcagaaaaaa	7	6	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128326163	G	G	128326163	1	3	26	0	1	0	0	0	0	0	0	0	14644	783	27	4		4	SLC27A6	5	128326163	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	613877	128326163	52589097	531	42615											
PDLIM4	8572	broad.mit.edu	37	chr5	131606626	131606626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacggcagcccaacaaccAgcaggcggccctcaggcacc	12	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131606626	T	T	131606626	3	4	26	1	0	0	0	0	1	0	0	0	11776	188	7	5	360	5	PDLIM4	5	131606626	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3280463	131606626	49308634	532	42616											
KIF3A	11127	broad.mit.edu	37	chr5	132073047	132073047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccatggcaacggccgcgCccccgggccaggccgctagg	14	19	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132073047	A	A	132073047	1	1	26	0	1	0	0	0	0	0	0	0	8370	754	26	3		3	KIF3A	5	132073047	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	466421	132073047	48842213	533	42617											
PHF15	23338	broad.mit.edu	37	chr5	133873659	133873659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctccaggacccctaatGgactgttctctctctgcagg	10	15	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133873659	T	T	133873659	1	4	26	0	1	0	0	0	0	0	0	0	11921	1363	47	2		2	PHF15	5	133873659	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1800612	133873659	47041601	534	42618											
PKD2L2	27039	broad.mit.edu	37	chr5	137235149	137235149	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatcgatttaaattcttaGaatacttctcagttgggctt	7	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137235149	A	A	137235149	1	1	26	0	1	0	0	0	0	0	0	0	12063	957	33	4		4	PKD2L2	5	137235149	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3361490	137235149	43680111	535	42619											
FAM13B	51306	broad.mit.edu	37	chr5	137298213	137298213	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcccaatactcagataagaGaagttgccaatctaaattag	6	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137298213	A	A	137298213	1	1	26	0	1	0	0	0	0	0	0	0	5499	957	33	4		4	FAM13B	5	137298213	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	63064	137298213	43617047	536	42620											
PSD2	84249	broad.mit.edu	37	chr5	139216500	139216500	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatggtggcaaccccttccTggatgtcccacaggcgctca	12	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139216500	C	C	139216500	3	2	26	1	0	0	0	0	1	0	0	0	12753	1580	55	5	1542	5	PSD2	5	139216500	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1918287	139216500	41698760	537	42621											
APBB3	10307	broad.mit.edu	37	chr5	139942054	139942054	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggtcctcttcaggtacctCtacccagcccagagagcgga	10	15	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139942054	A	A	139942054	4	1	26	1	0	0	0	0	0	1	0	0	764	922	32	3	1131	3	APBB3	5	139942054	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	725554	139942054	40973206	538	42622											
IK	3550	broad.mit.edu	37	chr5	140034245	140034245	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcacatttagcaaaaatAaaacttttttgtcttttcag	5	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140034245	G	G	140034245	1	3	26	0	1	0	0	0	0	0	0	0	7678	377	13	5		5	IK	5	140034245	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	92191	140034245	40881015	539	42623											
PCDHA3	56145	broad.mit.edu	37	chr5	140181570	140181570	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatggtaccctagtggtgaCcgttaacgccaccgatttgg	11	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140181570	T	T	140181570	3	4	26	1	0	0	0	0	1	0	0	0	11619	507	18	4	790	4	PCDHA3	5	140181570	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	147325	140181570	40733690	540	42624											
PCDHA6	56142	broad.mit.edu	37	chr5	140207847	140207847	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctggggctggagctggcGgagctggtgccgcgcctgtt	19	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140207847	T	T	140207847	2	4	26	1	0	0	0	0	0	0	0	1	11622	1103	39	1		1	PCDHA6	5	140207847	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	26277	140207847	40707413	541	42625											
PCDHA7	56141	broad.mit.edu	37	chr5	140215062	140215062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattccagaggacgcccaacCaggtaccgtcatcacattga	8	13	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215062	A	A	140215062	3	1	26	1	0	0	0	0	1	0	0	0	11623	594	21	2	1096	2	PCDHA7	5	140215062	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	7215	140215062	40700198	542	42626											
PCDHB4	56131	broad.mit.edu	37	chr5	140503432	140503432	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctgttcggcgtgtggGcgcacaatggcgaggtgcgc	19	10	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140503432	C	C	140503432	3	2	26	1	0	0	0	0	1	0	0	0	11638	1203	42	4	1854	4	PCDHB4	5	140503432	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	288370	140503432	40411828	543	42627											
PCDHB7	56129	broad.mit.edu	37	chr5	140552708	140552708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgagaggaactgtgtggcCccagagagccctgtgtgctg	15	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140552708	A	A	140552708	3	1	26	1	0	0	0	0	1	0	0	0	11641	623	22	2	294	2	PCDHB7	5	140552708	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	49276	140552708	40362552	544	42628											
PCDHB8	56128	broad.mit.edu	37	chr5	140559001	140559001	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctacaccctgttcgtccgCgagaacaacagccccgccct	7	19	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559001	A	A	140559001	2	1	26	1	0	0	0	0	0	0	0	1	11642	755	27	3		3	PCDHB8	5	140559001	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	6293	140559001	40356259	545	42629											
PCDHB9	56127	broad.mit.edu	37	chr5	140567414	140567414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaactacacgatcagctcCaactcttttttccatattaa	2	12	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140567414	A	A	140567414	2	1	26	1	0	0	0	0	0	0	0	1	11643	581	21	2		2	PCDHB9	5	140567414	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	8413	140567414	40347846	546	42630											
PCDHB9	56127	broad.mit.edu	37	chr5	140567665	140567665	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagaaaacagtccagtagGgtcccttattgttaaagtgt	9	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140567665	A	A	140567665	3	1	26	1	0	0	0	0	1	0	0	0	11643	1232	43	4	775	4	PCDHB9	5	140567665	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	251	140567665	40347595	547	42631											
PCDHB13	56123	broad.mit.edu	37	chr5	140593607	140593607	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactggcatatttctgagGtatctgtagaataaccacag	8	9	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140593607	T	T	140593607	1	4	26	0	1	0	0	0	0	0	0	0	11632	1276	44	3		3	PCDHB13	5	140593607	5'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	25942	140593607	40321653	548	42632											
PCDHGA1	56114	broad.mit.edu	37	chr5	140710430	140710430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaaccccaggagctggCagatggcggagtccgcatcg	15	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140710430	A	A	140710430	3	1	26	1	0	0	0	0	1	0	0	0	11644	710	25	3	181	3	PCDHGA1	5	140710430	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	116823	140710430	40204830	549	42633											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725293	140725293	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcgcccgagatcctgtacCccgccctccccacagacggt	9	20	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140725293	T	T	140725293	3	4	26	1	0	0	0	0	1	0	0	0	11649	623	22	4	1695	4	PCDHGA3	5	140725293	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	14863	140725293	40189967	550	42634											
PCDHGB1	56104	broad.mit.edu	37	chr5	140732037	140732037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgggcccggggttcctcCcaaccacagcgaggggactt	14	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140732037	A	A	140732037	3	1	26	1	0	0	0	0	1	0	0	0	11656	623	22	2	2212	2	PCDHGB1	5	140732037	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	6744	140732037	40183223	551	42635											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740422	140740422	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgccaacgataaccctccAgtgttcagccaggacgtgta	10	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140740422	C	C	140740422	2	2	26	1	0	0	0	0	0	0	0	1	11657	175	7	5		5	PCDHGB2	5	140740422	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	8385	140740422	40174838	552	42636											
PCDHGA5	56110	broad.mit.edu	37	chr5	140745978	140745978	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacctcacactctatcttgTggtggcagtggctgcagtct	12	11	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140745978	C	C	140745978	3	2	26	1	0	0	0	0	1	0	0	0	11651	1696	59	5	2083	5	PCDHGA5	5	140745978	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	5556	140745978	40169282	553	42637											
ARHGAP26	23092	broad.mit.edu	37	chr5	142586820	142586820	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttggcccatgttctcggcGccatccagccctatgcccac	8	18	2	0	rs79503222		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142586820	A	A	142586820	2	1	26	1	0	0	0	0	0	0	0	1	877	1074	38	4		4	ARHGAP26	5	142586820	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1840842	142586820	38328440	554	42638											
PPP2R2B	5521	broad.mit.edu	37	chr5	146080893	146080893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagtaaatttcctagatGcccacactgcacagtggtct	10	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146080893	T	T	146080893	1	4	26	0	1	0	0	0	0	0	0	0	12486	1334	46	3		3	PPP2R2B	5	146080893	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3494073	146080893	34834367	555	42639											
SPINK1	6690	broad.mit.edu	37	chr5	147211011	147211011	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactagactacatcaaaagtCtagaagataatgtgcttcac	7	8	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147211011	A	A	147211011	1	1	26	0	1	0	0	0	0	0	0	0	15175	928	32	3		3	SPINK1	5	147211011	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1130118	147211011	33704249	556	42640											
FBXO38	81545	broad.mit.edu	37	chr5	147818033	147818033	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgccacccgagagaaaccGcatcatatacctacgcccaa	6	15	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147818033	A	A	147818033	3	1	26	1	0	0	0	0	1	0	0	0	5803	1087	38	4	3062	4	FBXO38	5	147818033	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	607022	147818033	33097227	557	42641											
ABLIM3	22885	broad.mit.edu	37	chr5	148586759	148586759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctgtgaggcctgccccaTtgagcccatgcctacatctc	8	15	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148586759	A	A	148586759	1	1	26	0	1	0	0	0	0	0	0	0	96	1508	52	5		5	ABLIM3	5	148586759	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	768726	148586759	32328501	558	42642											
PPARGC1B	133522	broad.mit.edu	37	chr5	149216497	149216497	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagaagaggactcagggGtcagccccacttgctctgac	12	11	3	4	rs45628534	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149216497	A	A	149216497	3	1	26	1	0	0	0	0	1	0	0	0	12397	1261	44	4	2516	4	PPARGC1B	5	149216497	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	629738	149216497	31698763	559	42643											
FAT2	2196	broad.mit.edu	37	chr5	150947284	150947284	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattaagtttaaatcctacAttctctgaagatggctttag	7	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150947284	G	G	150947284	2	3	26	1	0	0	0	0	0	0	0	1	5747	214	8	5		5	FAT2	5	150947284	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	1730787	150947284	29967976	560	42644											
G3BP1	10146	broad.mit.edu	37	chr5	151173720	151173720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttctgttggcattgcagGggtctgttgcaaataaattc	10	7	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151173720	T	T	151173720	3	4	26	1	0	0	0	0	1	0	0	0	6201	1246	43	2	366	2	G3BP1	5	151173720	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	226436	151173720	29741540	561	42645											
GEMIN5	25929	broad.mit.edu	37	chr5	154282031	154282031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagactgtgctaagagccaTctttagtggacgtatcctag	10	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154282031	C	C	154282031	1	2	26	0	1	0	0	0	0	0	0	0	6395	1450	50	5		5	GEMIN5	5	154282031	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	3108311	154282031	26633229	562	42646											
SGCD	6444	broad.mit.edu	37	chr5	156186354	156186354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagattattcctgtctcagGcaggagctgggtccacttgt	13	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156186354	T	T	156186354	3	4	26	1	0	0	0	0	1	0	0	0	14314	1203	42	3	928	3	SGCD	5	156186354	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1904323	156186354	24728906	563	42647											
EBF1	1879	broad.mit.edu	37	chr5	158223226	158223226	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctagtttccccaaattcTgtagactgaagctggcccac	7	13	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158223226	A	A	158223226	1	1	26	0	1	0	0	0	0	0	0	0	4920	1595	55	5		5	EBF1	5	158223226	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2036872	158223226	22692034	564	42648											
MAT2B	27430	broad.mit.edu	37	chr5	162939024	162939024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaggaagttaacatccCtaataggagggttctggtta	12	5	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162939024	A	A	162939024	3	1	26	1	0	0	0	0	1	0	0	0	9423	681	24	2	120	2	MAT2B	5	162939024	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4715798	162939024	17976236	565	42649											
CPEB4	80315	broad.mit.edu	37	chr5	173376573	173376573	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggattggcctcataaagctGagagcaaatcctattttcct	8	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173376573	T	T	173376573	4	4	26	1	0	0	0	0	0	1	0	0	3835	1291	45	3	1541	3	CPEB4	5	173376573	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	10437549	173376573	7538687	566	42650											
SNCB	6620	broad.mit.edu	37	chr5	176053505	176053505	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgaggcctgttccttgGttttttcagccactggagca	12	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176053505	T	T	176053505	3	4	26	1	0	0	0	0	1	0	0	0	14956	1261	44	3	240	3	SNCB	5	176053505	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2676932	176053505	4861755	567	42651											
FGFR4	2264	broad.mit.edu	37	chr5	176517917	176517917	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaacacacggtcattctaGgggccttcccctgccctcca	10	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176517917	T	T	176517917	1	4	26	0	1	0	0	0	0	0	0	0	5925	1015	35	2		2	FGFR4	5	176517917	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	464412	176517917	4397343	568	42652											
FLT4	2324	broad.mit.edu	37	chr5	180048335	180048335	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgggagcagaggtagaaaAggatccctggaagctggact	16	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180048335	G	G	180048335	1	3	26	0	1	0	0	0	0	0	0	0	6002	87	3	5		5	FLT4	5	180048335	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	3530418	180048335	866925	569	42653											
BTNL8	79908	broad.mit.edu	37	chr5	180376779	180376779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcagtgtctgcgggagGctcaggtccggggcctcacc	16	12	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180376779	T	T	180376779	1	4	26	0	1	0	0	0	0	0	0	0	1577	1218	42	3		3	BTNL8	5	180376779	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	328444	180376779	538481	570	42654											
BTNL3	10917	broad.mit.edu	37	chr5	180430885	180430885	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcggaactgggtatgtgtCatgtcctgagcctcccacac	12	12	1	1	rs147204650	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180430885	T	T	180430885	1	4	26	0	1	0	0	0	0	0	0	0	1576	841	29	4		4	BTNL3	5	180430885	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	54106	180430885	484375	571	42655											
TRIM52	84851	broad.mit.edu	37	chr5	180687616	180687616	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccaccgcttcctcgtcctCctcctcctcccattcatctt	2	23	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180687616	T	T	180687616	3	4	26	1	0	0	0	0	1	0	0	0	16652	864	30	4	702	4	TRIM52	5	180687616	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	256731	180687616	227644	572	42656											
SERPINB9	5272	broad.mit.edu	37	chr6	2890822	2890822	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacctgaaagaccagaattaGactttaagattccgacttca	6	10	1	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2890822	C	C	2890822	1	2	26	0	1	0	0	0	0	0	0	0	14221	957	33	4		4	SERPINB9	6	2890822	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08		2890822	168224245	573	42657											
SSR1	6745	broad.mit.edu	37	chr6	7301605	7301605	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgtccgcccatgggctctgCaggaatgaaagagtactcaa	11	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7301605	G	G	7301605	3	3	26	1	0	0	0	0	1	0	0	0	15308	710	25	4	399	4	SSR1	6	7301605	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4410783	7301605	163813462	574	42658											
TXNDC5	81567	broad.mit.edu	37	chr6	7904925	7904925	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtctcccaggtcattccAagtcggctgcagccgctggc	11	14	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7904925	T	T	7904925	3	4	26	1	0	0	0	0	1	0	0	0	16925	130	5	5	1039	5	TXNDC5	6	7904925	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	603320	7904925	163210142	575	42659											
SLC35B3	51000	broad.mit.edu	37	chr6	8428397	8428397	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaccaagccccacctcCaacaacaacaaaatgtaaat	3	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8428397	T	T	8428397	1	4	26	0	1	0	0	0	0	0	0	0	14691	609	21	4		4	SLC35B3	6	8428397	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	523472	8428397	162686670	576	42660											
TFAP2A	7020	broad.mit.edu	37	chr6	10398916	10398916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcggtcctgagccagcaggtCggtgaactctttgcatatct	11	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10398916	A	A	10398916	3	1	26	1	0	0	0	0	1	0	0	0	15910	884	31	3	269	3	TFAP2A	6	10398916	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1970519	10398916	160716151	577	42661											
PHACTR1	221692	broad.mit.edu	37	chr6	13206311	13206311	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccatgcacccctcgggctGcagaatgatagacgagctca	10	15	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13206311	A	A	13206311	3	1	26	1	0	0	0	0	1	0	0	0	11904	1319	46	4	951	4	PHACTR1	6	13206311	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2807395	13206311	157908756	578	42662											
DTNBP1	84062	broad.mit.edu	37	chr6	15524604	15524604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcagctgccacacagcCgtgtggaaccgtggggttag	15	10	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15524604	A	A	15524604	1	1	26	0	1	0	0	0	0	0	0	0	4830	667	23	1		1	DTNBP1	6	15524604	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2318293	15524604	155590463	579	42663											
KIF13A	63971	broad.mit.edu	37	chr6	17788231	17788231	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaagctgttgaacattgCtgtgtgattaatatgcaaga	11	4	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17788231	T	T	17788231	1	4	26	0	1	0	0	0	0	0	0	0	8344	812	28	4		4	KIF13A	6	17788231	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2263627	17788231	153326836	580	42664											
KDM1B	221656	broad.mit.edu	37	chr6	18166609	18166609	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagcaactcccctactgGgtaaggagagtgatgctctc	11	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18166609	T	T	18166609	3	4	26	1	0	0	0	0	1	0	0	0	8193	1246	43	2	431	2	KDM1B	6	18166609	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	378378	18166609	152948458	581	42665											
DCDC2	51473	broad.mit.edu	37	chr6	24357729	24357729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccagccacgtaattgcCcccgctctggatctggtcta	9	16	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24357729	A	A	24357729	3	1	26	1	0	0	0	0	1	0	0	0	4318	623	22	2	1220	2	DCDC2	6	24357729	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	6191120	24357729	146757338	582	42666											
FAM65B	9750	broad.mit.edu	37	chr6	25024083	25024083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttgggggctttgaccgGttcctaggtcttcgtgtaga	16	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25024083	T	T	25024083	1	4	26	0	1	0	0	0	0	0	0	0	5651	1276	44	3		3	FAM65B	6	25024083	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	666354	25024083	146090984	583	42667											
BTN3A1	11119	broad.mit.edu	37	chr6	26410036	26410036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcacgcccatccccacCgcagagctcagttgctttta	7	17	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26410036	A	A	26410036	1	1	26	0	1	0	0	0	0	0	0	0	1572	667	23	1		1	BTN3A1	6	26410036	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1385953	26410036	144705031	584	42668											
HIST1H1B	3009	broad.mit.edu	37	chr6	27835161	27835161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttagaagcagccacagcCttggtgatcagctctgagac	10	12	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27835161	A	A	27835161	3	1	26	1	0	0	0	0	1	0	0	0	7190	680	24	2	537	2	HIST1H1B	6	27835161	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1425125	27835161	143279906	585	42669											
OR2B2	81697	broad.mit.edu	37	chr6	27880154	27880154	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcaggaagttaacaacAcacttcctgattttgtcagc	8	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27880154	T	T	27880154	1	4	26	0	1	0	0	0	0	0	0	0	11083	174	6	5		5	OR2B2	6	27880154	5'Flank	SNP	A	TCGA-05-4432-01A-01D-1265-08	44993	27880154	143234913	586	42670											
ZFP57	346171	broad.mit.edu	37	chr6	29643264	29643264	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttatgcagaaagattctgGctgatgtgtgggaatgagaa	14	4	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29643264	A	A	29643264	3	1	26	1	0	0	0	0	1	0	0	0	17777	1217	42	4	1367	4	ZFP57	6	29643264	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1763110	29643264	141471803	587	42671											
SFTA2	389376	broad.mit.edu	37	chr6	30899393	30899393	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgccatgtaagagagctctCcattcccaccacggagacat	9	14	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30899393	T	T	30899393	1	4	26	0	1	0	0	0	0	0	0	0	14300	870	30	4		4	SFTA2	6	30899393	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1256129	30899393	140215674	588	42672											
PPT2	9374	broad.mit.edu	37	chr6	32125471	32125471	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcctggccctgatcaatgGggaaagagaccatcccaatg	10	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32125471	C	C	32125471	3	2	26	1	0	0	0	0	1	0	0	0	12513	1232	43	4	639	4	PPT2	6	32125471	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1226078	32125471	138989596	589	42673											
NOTCH4	4855	broad.mit.edu	37	chr6	32169153	32169153	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagggccagggagggccCccactctgggtccccatctt	13	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32169153	G	G	32169153	3	3	26	1	0	0	0	0	1	0	0	0	10646	623	22	4	2167	4	NOTCH4	6	32169153	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	43682	32169153	138945914	590	42674											
HLA-DOA	3111	broad.mit.edu	37	chr6	32975070	32975070	+	Intron	DEL	G	-	-													ctggggccaggagggtgcatGgggagggggctccgtacccc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32975070	-	-	32975070	6	5	26	0	1	1	0	1	0	0	0	0	7267	1363	47	0		0	HLA-DOA	6	32975070	Intron	DEL	G	TCGA-05-4432-01A-01D-1265-08	805917	32975070	138139997	591	42675											
C6orf81	221481	broad.mit.edu	37	chr6	35716274	35716274	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaagaattttgtaacttgCctaggagtttattcccattc	6	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35716274	T	T	35716274	1	4	26	0	1	0	0	0	0	0	0	0	2396	754	26	4		4	C6orf81	6	35716274	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2741204	35716274	135398793	592	42676											
C6orf222	389384	broad.mit.edu	37	chr6	36285159	36285159	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggactttcaaccttaggacTtgtgatgttctgggaagaga	12	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36285159	A	A	36285159	3	1	26	1	0	0	0	0	1	0	0	0	2379	1609	56	5	29	5	C6orf222	6	36285159	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	568885	36285159	134829908	593	42677											
DNAH8	1769	broad.mit.edu	37	chr6	38691265	38691265	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgtaagtttaagtcttatCattatattttaattgccctt	4	6	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38691265	G	G	38691265	1	3	26	0	1	0	0	0	0	0	0	0	4647	841	29	4		4	DNAH8	6	38691265	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2406106	38691265	132423802	594	42678											
DNAH8	1769	broad.mit.edu	37	chr6	38775449	38775449	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtcttcaaaaagctacaCggttatctctggacacaatg	7	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38775449	T	T	38775449	3	4	26	1	0	0	0	0	1	0	0	0	4647	527	19	4	2641	4	DNAH8	6	38775449	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	84184	38775449	132339618	595	42679											
DNAH8	1769	broad.mit.edu	37	chr6	38850818	38850818	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgatagacaccattgcaaAacaacataaagtaagtttaa	5	6	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38850818	G	G	38850818	3	3	26	1	0	0	0	0	1	0	0	0	4647	14	1	5	7538	5	DNAH8	6	38850818	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	75369	38850818	132264249	596	42680											
FOXP4	116113	broad.mit.edu	37	chr6	41558173	41558173	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcctccaggaaggtccTggggccaagcaatggagctg	14	13	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41558173	C	C	41558173	1	2	26	0	1	0	0	0	0	0	0	0	6089	1595	55	5		5	FOXP4	6	41558173	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2707355	41558173	129556894	597	42681											
SLC22A7	10864	broad.mit.edu	37	chr6	43269800	43269800	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggcattatggatgtcagGgaaggtcctggcggggggac	20	6	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43269800	C	C	43269800	1	2	26	0	1	0	0	0	0	0	0	0	14573	1247	43	4		4	SLC22A7	6	43269800	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1711627	43269800	127845267	598	42682											
HSP90AB1	3326	broad.mit.edu	37	chr6	44221076	44221076	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttgaggatccccagaccCactccaaccgcatctatcgc	6	19	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44221076	T	T	44221076	3	4	26	1	0	0	0	0	1	0	0	0	7471	594	21	4	2064	4	HSP90AB1	6	44221076	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	951276	44221076	126893991	599	42683											
TCTE1	202500	broad.mit.edu	37	chr6	44255481	44255481	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtgcttgaagtgtgtcCtccagtggaggaattgtcct	13	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44255481	A	A	44255481	4	1	26	1	0	0	0	0	0	1	0	0	15839	690	24	2	1439	2	TCTE1	6	44255481	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	34405	44255481	126859586	600	42684											
GPR115	221393	broad.mit.edu	37	chr6	47676002	47676002	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagggaaacccaagactGgaaggatccaaggtatgtgg	14	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47676002	A	A	47676002	3	1	26	1	0	0	0	0	1	0	0	0	6697	1349	47	4	142	4	GPR115	6	47676002	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3420521	47676002	123439065	601	42685											
GPR115	221393	broad.mit.edu	37	chr6	47676028	47676028	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atccaaggtatgtggctataGaacagtcttcatccatttga	8	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47676028	C	C	47676028	1	2	26	0	1	0	0	0	0	0	0	0	6697	957	33	4		4	GPR115	6	47676028	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	26	47676028	123439039	602	42686											
MUT	4594	broad.mit.edu	37	chr6	49403211	49403211	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatgacaagaatatctggCcgtccaagggagttaagttc	10	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49403211	T	T	49403211	2	4	26	1	0	0	0	0	0	0	0	1	10085	726	26	4		4	MUT	6	49403211	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1727183	49403211	121711856	603	42687											
PKHD1	5314	broad.mit.edu	37	chr6	51503504	51503504	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttcttctcaagcttaatGatacagtcaagtgaatttat	5	7	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51503504	A	A	51503504	1	1	26	0	1	0	0	0	0	0	0	0	12066	1305	45	4		4	PKHD1	6	51503504	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2100293	51503504	119611563	604	42688											
PKHD1	5314	broad.mit.edu	37	chr6	51774352	51774352	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcccagtttgaaaggtacTgtcagcaccgaggaaaaacc	9	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51774352	A	A	51774352	1	1	26	0	1	0	0	0	0	0	0	0	12066	1595	55	5		5	PKHD1	6	51774352	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	270848	51774352	119340715	605	42689											
TINAG	27283	broad.mit.edu	37	chr6	54185441	54185441	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaactgcaactcctgGtaataaatttaagtggcaca	7	7	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54185441	T	T	54185441	5	4	26	1	0	0	0	0	0	0	1	0	16044	1275	44	3	426	3	TINAG	6	54185441	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	2411089	54185441	116929626	606	42690											
GFRAL	389400	broad.mit.edu	37	chr6	55192148	55192148	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcaccctcaggagaataatCgaatttgaatataattagaa	7	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55192148	A	A	55192148	1	1	26	0	1	0	0	0	0	0	0	0	6415	899	31	3		3	GFRAL	6	55192148	5'Flank	SNP	C	TCGA-05-4432-01A-01D-1265-08	1006707	55192148	115922919	607	42691											
HMGCLL1	54511	broad.mit.edu	37	chr6	55300386	55300387	+	3'UTR	DNP	GG	TT	TT													ttcacatatcagagcaagttGgcattaatgattttcagatg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55300387	TT	TT	55300386	1	4	26	0	1	0	0	0	0	0	0	0	7297	1363	47	2		2	HMGCLL1	6	55300386	3'UTR	DNP	GG	TCGA-05-4432-01A-01D-1265-08	108238	55300386	115814681	608	42692											
DST	667	broad.mit.edu	37	chr6	56468159	56468159	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagactttaaaaactcttcTgccaacttcatatcttttct	3	10	5	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56468159	C	C	56468159	1	2	26	0	1	0	0	0	0	0	0	0	4823	1595	55	5		5	DST	6	56468159	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1167773	56468159	114646908	609	42693											
BEND6	221336	broad.mit.edu	37	chr6	56869347	56869347	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatgactaccacatgcccCtcacaggtgcgccagaacta	8	16	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56869347	T	T	56869347	1	4	26	0	1	0	0	0	0	0	0	0	1407	696	24	4		4	BEND6	6	56869347	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	401188	56869347	114245720	610	42694											
PRIM2	5558	broad.mit.edu	37	chr6	57467226	57467226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagtgcctccactggatAtgttggccaagtacagaaat	11	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57467226	T	T	57467226	1	4	26	0	1	0	0	0	0	0	0	0	12597	464	16	5		5	PRIM2	6	57467226	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	597879	57467226	113647841	611	42695											
EYS	346007	broad.mit.edu	37	chr6	66013924	66013924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaacatgaggccactccaGgggcaaggttgctactgcga	12	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66013924	T	T	66013924	1	4	26	0	1	0	0	0	0	0	0	0	5375	1015	35	2		2	EYS	6	66013924	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	8546698	66013924	105101143	612	42696											
EYS	346007	broad.mit.edu	37	chr6	66112422	66112422	+	Frame_Shift_Del	DEL	G	-	-													atgtagcattattcctcaaaGgaaatgactcacatgatgtt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66112422	-	-	66112422	7	5	26	1	0	1	0	1	0	0	0	0	5375	1000	35	0	8411	0	EYS	6	66112422	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	98498	66112422	105002645	613	42697											
BAI3	577	broad.mit.edu	37	chr6	69684794	69684794	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccaaaccctagtgataatCcccatccaagaacagcatgc	5	15	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69684794	A	A	69684794	1	1	26	0	1	0	0	0	0	0	0	0	1305	870	30	3		3	BAI3	6	69684794	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3572372	69684794	101430273	614	42698											
COL9A1	1297	broad.mit.edu	37	chr6	70961991	70961991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgaatttcccatctgacCaggcttccctggagcacctg	9	15	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70961991	A	A	70961991	3	1	26	1	0	0	0	0	1	0	0	0	3739	594	21	2	1021	2	COL9A1	6	70961991	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1277197	70961991	100153076	615	42699											
OGFRL1	79627	broad.mit.edu	37	chr6	72006573	72006573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacagttattttcccttgGtcagagttctctatgaaacg	8	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72006573	T	T	72006573	1	4	26	0	1	0	0	0	0	0	0	0	10939	1276	44	3		3	OGFRL1	6	72006573	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1044582	72006573	99108494	616	42700											
CD109	135228	broad.mit.edu	37	chr6	74407145	74407145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtttctggtgacagccCcagggatcatcaggcccgga	13	13	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74407145	A	A	74407145	3	1	26	1	0	0	0	0	1	0	0	0	2993	623	22	2	103	2	CD109	6	74407145	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2400572	74407145	96707922	617	42701											
CD109	135228	broad.mit.edu	37	chr6	74432909	74432909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattgggagagttttggaaGgtttgtattctatcatcata	11	3	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74432909	T	T	74432909	1	4	26	0	1	0	0	0	0	0	0	0	2993	1015	35	2		2	CD109	6	74432909	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	25764	74432909	96682158	618	42702											
CD109	135228	broad.mit.edu	37	chr6	74493581	74493581	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgcttatcagtattacGgtgacattaagctaatacag	9	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74493581	A	A	74493581	1	1	26	0	1	0	0	0	0	0	0	0	2993	1131	39	4		4	CD109	6	74493581	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	60672	74493581	96621486	619	42703											
TMEM30A	55754	broad.mit.edu	37	chr6	75969072	75969072	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgttttacctttaaatcGttcttccaggttgtctcctc	5	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75969072	A	A	75969072	4	1	26	1	0	0	0	0	0	1	0	0	16276	1153	40	4	421	4	TMEM30A	6	75969072	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1475491	75969072	95145995	620	42704											
IMPG1	3617	broad.mit.edu	37	chr6	76714945	76714945	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtttccatgagacattcAcattcttagtctctgccaaa	5	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76714945	C	C	76714945	1	2	26	0	1	0	0	0	0	0	0	0	7798	174	6	5		5	IMPG1	6	76714945	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	745873	76714945	94400122	621	42705											
IMPG1	3617	broad.mit.edu	37	chr6	76751728	76751728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttcgatgctttgccaaatcGaatattcgtctcatagttga	8	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76751728	T	T	76751728	3	4	26	1	0	0	0	0	1	0	0	0	7798	1049	37	3	2274	3	IMPG1	6	76751728	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	36783	76751728	94363339	622	42706											
TBX18	9096	broad.mit.edu	37	chr6	85448064	85448064	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttttttcctgatccatcccCataccatgcagaagacagat	6	12	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85448064	T	T	85448064	1	4	26	0	1	0	0	0	0	0	0	0	15775	609	21	4		4	TBX18	6	85448064	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	8696336	85448064	85667003	623	42707											
SPACA1	81833	broad.mit.edu	37	chr6	88773939	88773939	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcataatcataaattggTaggtgaatagtggaatgcat	9	4	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88773939	A	A	88773939	5	1	26	1	0	0	0	0	0	0	1	0	15086	1652	57	5	755	5	SPACA1	6	88773939	Splice_Site	SNP	T	TCGA-05-4432-01A-01D-1265-08	3325875	88773939	82341128	624	42708											
GABRR2	2570	broad.mit.edu	37	chr6	90012060	90012060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaccccatgctgtccatcCaccagctggtggagaataca	8	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90012060	A	A	90012060	1	1	26	0	1	0	0	0	0	0	0	0	6237	609	21	2		2	GABRR2	6	90012060	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1238121	90012060	81103007	625	42709											
LYRM2	57226	broad.mit.edu	37	chr6	90347537	90347537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgcgatcagaatcatttGgaacttgccgaattgtttgc	9	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90347537	T	T	90347537	3	4	26	1	0	0	0	0	1	0	0	0	9208	1348	47	2	164	2	LYRM2	6	90347537	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	335477	90347537	80767530	626	42710											
CASP8AP2	9994	broad.mit.edu	37	chr6	90577282	90577282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaagataatgtgtgtagtGtagaaaagagcaagccctgc	12	5	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90577282	T	T	90577282	3	4	26	1	0	0	0	0	1	0	0	0	2704	1377	48	3	4299	3	CASP8AP2	6	90577282	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	229745	90577282	80537785	627	42711											
FUT9	10690	broad.mit.edu	37	chr6	96652195	96652195	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaagagatgcaacatactActtttgtgtcacaatttatt	6	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96652195	G	G	96652195	1	3	26	0	1	0	0	0	0	0	0	0	6171	406	14	5		5	FUT9	6	96652195	3'UTR	SNP	A	TCGA-05-4432-01A-01D-1265-08	6074913	96652195	74462872	628	42712											
FHL5	9457	broad.mit.edu	37	chr6	97058635	97058635	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttccaaacccattagtgGtgagttcttcagttcaatat	7	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97058635	T	T	97058635	5	4	26	1	0	0	0	0	0	0	1	0	5938	1275	44	3	706	3	FHL5	6	97058635	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	406440	97058635	74056432	629	42713											
ASCC3	10973	broad.mit.edu	37	chr6	101053528	101053528	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagaattacagctttgcctTggtcatcgaactgcggcctc	9	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101053528	A	A	101053528	3	1	26	1	0	0	0	0	1	0	0	0	1037	1812	63	5	1555	5	ASCC3	6	101053528	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3994893	101053528	70061539	630	42714											
SOBP	55084	broad.mit.edu	37	chr6	107827660	107827660	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactggtgttttcagtgatAacaattcatagaaagttgtt	8	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107827660	G	G	107827660	1	3	26	0	1	0	0	0	0	0	0	0	15026	377	13	5		5	SOBP	6	107827660	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	6774132	107827660	63287407	631	42715											
REV3L	5980	broad.mit.edu	37	chr6	111685009	111685009	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgttttatagaataaaacagGagttaaactgaacacaatgt	7	4	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111685009	A	A	111685009	1	1	26	0	1	0	0	0	0	0	0	0	13348	1189	41	4		4	REV3L	6	111685009	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3857349	111685009	59430058	632	42716											
LAMA4	3910	broad.mit.edu	37	chr6	112499258	112499258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaacagtagccattatgcCtactgatgttaataacataa	5	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112499258	A	A	112499258	1	1	26	0	1	0	0	0	0	0	0	0	8680	696	24	2		2	LAMA4	6	112499258	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	814249	112499258	58615809	633	42717											
HDAC2	3066	broad.mit.edu	37	chr6	114281153	114281153	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaggcttcatgggatgacCctgtccataataataatttc	8	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114281153	G	G	114281153	3	3	26	1	0	0	0	0	1	0	0	0	7074	623	22	4	1436	4	HDAC2	6	114281153	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1781895	114281153	56833914	634	42718											
HS3ST5	222537	broad.mit.edu	37	chr6	114378677	114378677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagctgaagttctggcagaGgttccgtgatgaggcgatct	15	8	2	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114378677	T	T	114378677	3	4	26	1	0	0	0	0	1	0	0	0	7435	1000	35	2	259	2	HS3ST5	6	114378677	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	97524	114378677	56736390	635	42719											
FAM26E	254228	broad.mit.edu	37	chr6	116837191	116837191	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggtgttgagtggcatGctcattctgtgatcctccta	10	10	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116837191	C	C	116837191	1	2	26	0	1	0	0	0	0	0	0	0	5601	1334	46	4		4	FAM26E	6	116837191	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	2458514	116837191	54277876	636	42720											
GPRC6A	222545	broad.mit.edu	37	chr6	117114013	117114013	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaatttctgtaatttgggAtcaaagctgaaggctagcaa	10	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117114013	T	T	117114013	3	4	26	1	0	0	0	0	1	0	0	0	6794	330	12	5	711	5	GPRC6A	6	117114013	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	276822	117114013	54001054	637	42721											
SLC35F1	222553	broad.mit.edu	37	chr6	118475609	118475609	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttcctttatttctcaggGagatgttaatctctgtggcc	8	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118475609	T	T	118475609	4	4	26	1	0	0	0	0	0	1	0	0	14702	1188	41	3	181	3	SLC35F1	6	118475609	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1361596	118475609	52639458	638	42722											
CLVS2	134829	broad.mit.edu	37	chr6	123318799	123318799	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccaagattattaatttccTgtaggggagaggaagcaggc	12	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123318799	A	A	123318799	1	1	26	0	1	0	0	0	0	0	0	0	3604	1595	55	5		5	CLVS2	6	123318799	5'UTR	SNP	T	TCGA-05-4432-01A-01D-1265-08	4843190	123318799	47796268	639	42723											
C6orf174	387104	broad.mit.edu	37	chr6	127775032	127775032	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcttccattgactttccCattcctttctttcattgtca	2	12	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127775032	A	A	127775032	1	1	26	0	1	0	0	0	0	0	0	0	2368	595	21	2		2	C6orf174	6	127775032	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	4456233	127775032	43340035	640	42724											
C6orf174	387104	broad.mit.edu	37	chr6	127775126	127775126	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactgcttatgtaggtccaTggcaacagtgtaagtgtcag	11	9	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127775126	G	G	127775126	1	3	26	0	1	0	0	0	0	0	0	0	2368	1464	51	5		5	C6orf174	6	127775126	3'UTR	SNP	T	TCGA-05-4432-01A-01D-1265-08	94	127775126	43339941	641	42725											
LAMA2	3908	broad.mit.edu	37	chr6	129571288	129571289	+	Missense_Mutation	DNP	CC	AA	AA													aggaggacagttgacatttaCcatatcatatgaccttgaag					rs112388307	byFrequency;by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	129571289	AA	AA	129571288	3	1	26	1	0	0	0	0	1	0	0	0	8678	507	18	3	1864	3	LAMA2	6	129571288	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	1796162	129571288	41543779	642	42726											
LAMA2	3908	broad.mit.edu	37	chr6	129637115	129637115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaagttagtcattgtttGgtgcaaagataccaatcaat	9	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129637115	T	T	129637115	1	4	26	0	1	0	0	0	0	0	0	0	8678	1363	47	2		2	LAMA2	6	129637115	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	65827	129637115	41477952	643	42727											
LAMA2	3908	broad.mit.edu	37	chr6	129781320	129781320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaattccaaattctagCaaataacggtatttctttct	5	7	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129781320	A	A	129781320	1	1	26	0	1	0	0	0	0	0	0	0	8678	725	25	3		3	LAMA2	6	129781320	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	144205	129781320	41333747	644	42728											
LAMA2	3908	broad.mit.edu	37	chr6	129833584	129833584	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacgactggagttcttctGgggatcagtagtcaaaaaat	10	7	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129833584	A	A	129833584	2	1	26	1	0	0	0	0	0	0	0	1	8678	1335	47	4		4	LAMA2	6	129833584	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	52264	129833584	41281483	645	42729											
TAAR6	319100	broad.mit.edu	37	chr6	132891677	132891677	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaccaattttctcgttgccTctctggcctgcgctgatttc	8	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132891677	C	C	132891677	3	2	26	1	0	0	0	0	1	0	0	0	15611	1551	54	5	219	5	TAAR6	6	132891677	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3058093	132891677	38223390	646	42730											
EYA4	2070	broad.mit.edu	37	chr6	133836379	133836379	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaataaaaatgatctattCcagacagaagggaatctaaa	7	5	2	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133836379	A	A	133836379	1	1	26	0	1	0	0	0	0	0	0	0	5374	870	30	3		3	EYA4	6	133836379	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	944702	133836379	37278688	647	42731											
ALDH8A1	64577	broad.mit.edu	37	chr6	135253996	135253996	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgatggcaggattcttgCcccccagctccagggagagc	13	12	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135253996	T	T	135253996	3	4	26	1	0	0	0	0	1	0	0	0	505	739	26	4	708	4	ALDH8A1	6	135253996	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1417617	135253996	35861071	648	42732											
BCLAF1	9774	broad.mit.edu	37	chr6	136597009	136597009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcaagaggaacaggtgCcattttgagtttgacttcag	10	7	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136597009	A	A	136597009	3	1	26	1	0	0	0	0	1	0	0	0	1388	739	26	3	1144	3	BCLAF1	6	136597009	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1343013	136597009	34518058	649	42733											
HIVEP2	3097	broad.mit.edu	37	chr6	143091689	143091690	+	Missense_Mutation	DNP	CC	AA	AA													tctccaagcccgcatgctgcCccagcacctgggcaatgttg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	143091690	AA	AA	143091689	3	1	26	1	0	0	0	0	1	0	0	0	7254	623	22	2	3177	2	HIVEP2	6	143091689	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	6494680	143091689	28023378	650	42734											
UTRN	7402	broad.mit.edu	37	chr6	144761745	144761745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttgattgtacttctcaGttggggttctacagtgtgtg	11	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144761745	T	T	144761745	1	4	26	0	1	0	0	0	0	0	0	0	17230	1044	36	3		3	UTRN	6	144761745	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1670056	144761745	26353322	651	42735											
UTRN	7402	broad.mit.edu	37	chr6	144863971	144863971	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccctgaaggaatgcatccAggagcccagttctgtttcac	9	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144863971	T	T	144863971	3	4	26	1	0	0	0	0	1	0	0	0	17230	188	7	5	6738	5	UTRN	6	144863971	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	102226	144863971	26251096	652	42736											
GRM1	2911	broad.mit.edu	37	chr6	146720216	146720216	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctttagtgactaaaaccaatCgtattgcacgcatcctggct	7	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146720216	G	G	146720216	3	3	26	1	0	0	0	0	1	0	0	0	6862	884	31	4	2067	4	GRM1	6	146720216	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1856245	146720216	24394851	653	42737											
SASH1	23328	broad.mit.edu	37	chr6	148855994	148855994	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagggacccggaacacagAgctgttctcttgacagcagt	11	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148855994	C	C	148855994	3	2	26	1	0	0	0	0	1	0	0	0	13960	301	11	5	2114	5	SASH1	6	148855994	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	2135778	148855994	22259073	654	42738											
TAB2	23118	broad.mit.edu	37	chr6	149700627	149700627	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacacggaaactgagtatgGgatctgatgatgctgcctac	11	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149700627	T	T	149700627	4	4	26	1	0	0	0	0	0	1	0	0	15615	1233	43	2	1582	2	TAB2	6	149700627	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	844633	149700627	21414440	655	42739											
PLEKHG1	57480	broad.mit.edu	37	chr6	151055134	151055134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagacgatcgcagactcggCcacgagccccaagctcctct	9	17	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151055134	A	A	151055134	3	1	26	1	0	0	0	0	1	0	0	0	12163	739	26	3	319	3	PLEKHG1	6	151055134	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1354507	151055134	20059933	656	42740											
SYNE1	23345	broad.mit.edu	37	chr6	152529434	152529434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgtcaacaaccctaagCcctgagaagtgatctagggc	9	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152529434	A	A	152529434	1	1	26	0	1	0	0	0	0	0	0	0	15564	754	26	3		3	SYNE1	6	152529434	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1474300	152529434	18585633	657	42741											
PNLDC1	154197	broad.mit.edu	37	chr6	160222068	160222068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcctccccggttgcgagtGgtggtcctgccgcggaggcc	15	14	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160222068	T	T	160222068	1	4	26	0	1	0	0	0	0	0	0	0	12243	1363	47	2		2	PNLDC1	6	160222068	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	7692634	160222068	10892999	658	42742											
MAP3K4	4216	broad.mit.edu	37	chr6	161530730	161530730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagttttccagatttttcaCtagcgtacatctaaggaaaa	7	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161530730	T	T	161530730	1	4	26	0	1	0	0	0	0	0	0	0	9344	580	20	4		4	MAP3K4	6	161530730	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1308662	161530730	9584337	659	42743											
C6orf118	168090	broad.mit.edu	37	chr6	165711596	165711596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagccagaagagcctaggCaggaccaggtacatgaggtg	15	8	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165711596	A	A	165711596	1	1	26	0	1	0	0	0	0	0	0	0	2346	725	25	3		3	C6orf118	6	165711596	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4180866	165711596	5403471	660	42744											
PDE10A	10846	broad.mit.edu	37	chr6	165895891	165895891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgagtaggttttaaaataCaaaacatgtcatttgctttc	6	6	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165895891	A	A	165895891	1	1	26	0	1	0	0	0	0	0	0	0	11724	493	17	3		3	PDE10A	6	165895891	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	184295	165895891	5219176	661	42745											
PDE10A	10846	broad.mit.edu	37	chr6	165956914	165956914	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggtttaaaatgagatccAcaagagaccttaccttctga	8	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165956914	G	G	165956914	1	3	26	0	1	0	0	0	0	0	0	0	11724	174	6	5		5	PDE10A	6	165956914	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	61023	165956914	5158153	662	42746											
RPS6KA2	6196	broad.mit.edu	37	chr6	166921635	166921635	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctccacccctcctcccctCgagtcccagacagaagctcc	5	22	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166921635	G	G	166921635	1	3	26	0	1	0	0	0	0	0	0	0	13762	899	31	4		4	RPS6KA2	6	166921635	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	964721	166921635	4193432	663	42747											
TTLL2	83887	broad.mit.edu	37	chr6	167754801	167754801	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaacgaggatgactctgtGgtggagaaagctgtgagtgt	15	5	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167754801	A	A	167754801	2	1	26	1	0	0	0	0	0	0	0	1	16853	1335	47	4		4	TTLL2	6	167754801	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	833166	167754801	3360266	664	42748											
CARD11	84433	broad.mit.edu	37	chr7	2969713	2969713	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctcgtgccccttggctgtCctcacgggagacgagatggg	14	13	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2969713	A	A	2969713	1	1	26	0	1	0	0	0	0	0	0	0	2671	870	30	3		3	CARD11	7	2969713	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08		2969713	156168950	665	42749											
SDK1	221935	broad.mit.edu	37	chr7	4153888	4153888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggagcgaggtggtgcggGgccggacgcgggagtcaggt	23	8	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4153888	T	T	4153888	3	4	26	1	0	0	0	0	1	0	0	0	14081	1232	43	2	3903	2	SDK1	7	4153888	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1184175	4153888	154984775	666	42750											
WIPI2	26100	broad.mit.edu	37	chr7	5239290	5239290	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacagatctatgaatgcaGtaagtgtttgctttattttt	9	4	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5239290	A	A	5239290	5	1	26	1	0	0	0	0	0	0	1	0	17498	1043	36	4	222	4	WIPI2	7	5239290	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	1085402	5239290	153899373	667	42751											
PMS2	5395	broad.mit.edu	37	chr7	6038962	6038962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaatattataggaattaCacagctcaagttacaacatc	4	8	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6038962	A	A	6038962	1	1	26	0	1	0	0	0	0	0	0	0	12238	493	17	3		3	PMS2	7	6038962	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	799672	6038962	153099701	668	42752											
AIMP2	7965	broad.mit.edu	37	chr7	6054643	6054643	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacaggcgtgagccaccacAcccagcccataatgtcttct	7	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6054643	T	T	6054643	1	4	26	0	1	0	0	0	0	0	0	0	434	174	6	5		5	AIMP2	7	6054643	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	15681	6054643	153084020	669	42753											
NDUFA4	4697	broad.mit.edu	37	chr7	10978447	10978447	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacttaccaaacatctggaTtgaacaatgccagacgcaag	8	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10978447	A	A	10978447	3	1	26	1	0	0	0	0	1	0	0	0	10361	1493	52	5	138	5	NDUFA4	7	10978447	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	4923804	10978447	148160216	670	42754											
ETV1	2115	broad.mit.edu	37	chr7	13971169	13971169	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggttcctgtttaatcatcaGaggagggggaaagctttggc	15	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13971169	A	A	13971169	2	1	26	1	0	0	0	0	0	0	0	1	5319	933	33	4		4	ETV1	7	13971169	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	2992722	13971169	145167494	671	42755											
HDAC9	9734	broad.mit.edu	37	chr7	18767422	18767422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaataggcaggctaaatGccccgttcttgtaggattaa	9	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18767422	T	T	18767422	1	4	26	0	1	0	0	0	0	0	0	0	7081	1334	46	3		3	HDAC9	7	18767422	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4796253	18767422	140371241	672	42756											
HDAC9	9734	broad.mit.edu	37	chr7	18868676	18868676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaagcgtatgagacttcaGttttgtgtgtgtgtgcctga	14	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18868676	T	T	18868676	1	4	26	0	1	0	0	0	0	0	0	0	7081	1044	36	3		3	HDAC9	7	18868676	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	101254	18868676	140269987	673	42757											
ITGB8	3696	broad.mit.edu	37	chr7	20418642	20418642	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgaaaagtttaaaatgaaGactacatgatgtttttcttc	6	6	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20418642	T	T	20418642	1	4	26	0	1	0	0	0	0	0	0	0	7971	957	33	3		3	ITGB8	7	20418642	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1549966	20418642	138720021	674	42758											
HOXA7	3204	broad.mit.edu	37	chr7	27196009	27196009	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgacattgtataagccCggaacggtcgaggcgaaggc	14	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27196009	G	G	27196009	2	3	26	1	0	0	0	0	0	0	0	1	7364	639	23	4		4	HOXA7	7	27196009	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	6777367	27196009	131942654	675	42759											
HOXA10	3206	broad.mit.edu	37	chr7	27213858	27213858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagagttcgcggcggggCtctccgagcatgacattgtt	13	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27213858	A	A	27213858	3	1	26	1	0	0	0	0	1	0	0	0	7356	797	28	3	1172	3	HOXA10	7	27213858	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	17849	27213858	131924805	676	42760											
EVX1	2128	broad.mit.edu	37	chr7	27284799	27284799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccagatgcgtcgttaccGcaccgccttcacccgagagc	10	16	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27284799	T	T	27284799	3	4	26	1	0	0	0	0	1	0	0	0	5336	1087	38	3	566	3	EVX1	7	27284799	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	70941	27284799	131853864	677	42761											
PDE1C	5137	broad.mit.edu	37	chr7	31913061	31913061	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaacacattagcccacAgacacttacacacctaccag	5	14	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31913061	G	G	31913061	1	3	26	0	1	0	0	0	0	0	0	0	11729	203	7	5		5	PDE1C	7	31913061	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	4628262	31913061	127225602	678	42762											
NPSR1	387129	broad.mit.edu	37	chr7	34724093	34724094	+	Intron	DNP	GG	TA	TA													aggaggaagaaatccagcctGgggcaggcattctgtaaaga							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	34724094	TA	TA	34724093	1	4	26	0	1	0	0	0	0	0	0	0	10695	1363	47	2		2	NPSR1	7	34724093	Intron	DNP	GG	TCGA-05-4432-01A-01D-1265-08	2811032	34724093	124414570	679	42763											
NPSR1	387129	broad.mit.edu	37	chr7	34818226	34818226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaactgataccagagttaGcttttagatttatctaagga	7	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34818226	T	T	34818226	1	4	26	0	1	0	0	0	0	0	0	0	10695	986	34	3		3	NPSR1	7	34818226	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	94133	34818226	124320437	680	42764											
AMPH	273	broad.mit.edu	37	chr7	38462117	38462117	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagaagatgttttttaaagAtatttaaatcagctaccatc	5	5	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38462117	G	G	38462117	1	3	26	0	1	0	0	0	0	0	0	0	588	348	12	5		5	AMPH	7	38462117	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	3643891	38462117	120676546	681	42765											
AMPH	273	broad.mit.edu	37	chr7	38543367	38543367	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgaaaacatgtaagaAgtgctaagtctcaaagttac	8	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38543367	T	T	38543367	1	4	26	0	1	0	0	0	0	0	0	0	588	87	3	5		5	AMPH	7	38543367	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	81250	38543367	120595296	682	42766											
HECW1	23072	broad.mit.edu	37	chr7	43484383	43484383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaggccctgctccttgCctgtgtccgagctggagacg	13	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43484383	A	A	43484383	3	1	26	1	0	0	0	0	1	0	0	0	7109	739	26	3	1646	3	HECW1	7	43484383	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4941016	43484383	115654280	683	42767											
CCM2	83605	broad.mit.edu	37	chr7	45108125	45108125	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctccctgtcggagagtGcagttgggcccgtggaggca	17	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45108125	A	A	45108125	3	1	26	1	0	0	0	0	1	0	0	0	2938	1319	46	4	671	4	CCM2	7	45108125	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1623742	45108125	114030538	684	42768											
TNS3	64759	broad.mit.edu	37	chr7	47408930	47408930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatttccttgagggagcttCcaggatcttccaggccaaag	10	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47408930	A	A	47408930	3	1	26	1	0	0	0	0	1	0	0	0	16467	855	30	3	3084	3	TNS3	7	47408930	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2300805	47408930	111729733	685	42769											
PKD1L1	168507	broad.mit.edu	37	chr7	47840161	47840161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctgtgttgcctggccCtgtccacatggaccagagtt	12	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47840161	A	A	47840161	1	1	26	0	1	0	0	0	0	0	0	0	12059	696	24	2		2	PKD1L1	7	47840161	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	431231	47840161	111298502	686	42770											
PKD1L1	168507	broad.mit.edu	37	chr7	47873917	47873917	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgctagaagattagctgctGcgcataatgattgatttacc	9	7	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47873917	C	C	47873917	1	2	26	0	1	0	0	0	0	0	0	0	12059	1334	46	4		4	PKD1L1	7	47873917	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	33756	47873917	111264746	687	42771											
PKD1L1	168507	broad.mit.edu	37	chr7	47920245	47920245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgatgtagacctgcacccCattccttaggaagagtaaac	9	11	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47920245	A	A	47920245	1	1	26	0	1	0	0	0	0	0	0	0	12059	609	21	2		2	PKD1L1	7	47920245	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	46328	47920245	111218418	688	42772											
UPP1	7378	broad.mit.edu	37	chr7	48142902	48142902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggttccagcatggtatGggcattccttctatctcaat	8	12	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48142902	T	T	48142902	3	4	26	1	0	0	0	0	1	0	0	0	17138	1348	47	2	344	2	UPP1	7	48142902	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	222657	48142902	110995761	689	42773											
ABCA13	154664	broad.mit.edu	37	chr7	48390351	48390351	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgaaccgtttccaggctcTgcagtctgtcgacatcctgg	10	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48390351	A	A	48390351	3	1	26	1	0	0	0	0	1	0	0	0	31	1580	55	5	10263	5	ABCA13	7	48390351	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	247449	48390351	110748312	690	42774											
VSTM2A	222008	broad.mit.edu	37	chr7	54610349	54610349	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgagactgagcctgcCatccactcgcacgcctttct	9	16	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54610349	T	T	54610349	1	4	26	0	1	0	0	0	0	0	0	0	17356	609	21	4		4	VSTM2A	7	54610349	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	6219998	54610349	104528314	691	42775											
EGFR	1956	broad.mit.edu	37	chr7	55268110	55268110	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctaccttgtcattcaggtaCaaattgcagtctgtgcttcc	8	11	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55268110	T	T	55268110	1	4	26	0	1	0	0	0	0	0	0	0	5007	493	17	4		4	EGFR	7	55268110	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	657761	55268110	103870553	692	42776											
ZNF679	168417	broad.mit.edu	37	chr7	63726941	63726941	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctttagcttatcctcatcCctcacttaccacaagagaat	4	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63726941	T	T	63726941	2	4	26	1	0	0	0	0	0	0	0	1	18213	610	22	4		4	ZNF679	7	63726941	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	8458831	63726941	95411722	693	42777											
ZNF679	168417	broad.mit.edu	37	chr7	63727024	63727024	+	Frame_Shift_Del	DEL	C	-	-													agcctttaactgctcctcaaCccttaagaaacataagataa					rs111583875		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63727024	-	-	63727024	7	5	26	1	0	1	0	1	0	0	0	0	18213	507	18	0	1027	0	ZNF679	7	63727024	Frame_Shift_Del	DEL	C	TCGA-05-4432-01A-01D-1265-08	83	63727024	95411639	694	42778											
CRCP	27297	broad.mit.edu	37	chr7	65617370	65617370	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacagctggccccggcgtttCatgaagtcagaaggcctggc	13	13	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65617370	A	A	65617370	1	1	26	0	1	0	0	0	0	0	0	0	3884	841	29	3		3	CRCP	7	65617370	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	1890346	65617370	93521293	695	42779											
TPST1	8460	broad.mit.edu	37	chr7	65821897	65821897	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccaggtctttctgtttccCactcgggctcttgcaggggg	13	12	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65821897	G	G	65821897	1	3	26	0	1	0	0	0	0	0	0	0	16551	609	21	4		4	TPST1	7	65821897	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	204527	65821897	93316766	696	42780											
MAGI2	9863	broad.mit.edu	37	chr7	78256629	78256629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttagaaataccaccataCttctgaatattcagtgccac	4	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78256629	A	A	78256629	1	1	26	0	1	0	0	0	0	0	0	0	9283	580	20	3		3	MAGI2	7	78256629	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	12434732	78256629	80882034	697	42781											
SEMA3D	223117	broad.mit.edu	37	chr7	84636098	84636098	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttccctcaaagtgagtattCtttgatgacaacagcttacc	6	10	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84636098	G	G	84636098	1	3	26	0	1	0	0	0	0	0	0	0	14140	928	32	4		4	SEMA3D	7	84636098	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	6379469	84636098	74502565	698	42782											
CROT	54677	broad.mit.edu	37	chr7	87022321	87022321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggctatttacgagtccaGggagtggtagttcccatggt	14	7	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87022321	T	T	87022321	3	4	26	1	0	0	0	0	1	0	0	0	3926	991	35	2	1802	2	CROT	7	87022321	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2386223	87022321	72116342	699	42783											
ABCB4	5244	broad.mit.edu	37	chr7	87032462	87032462	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacacaccttttcactttCagtatccagagctgatgtag	6	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87032462	T	T	87032462	3	4	26	1	0	0	0	0	1	0	0	0	43	835	29	4	225	4	ABCB4	7	87032462	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	10141	87032462	72106201	700	42784											
ABCB1	5243	broad.mit.edu	37	chr7	87179872	87179872	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggtttgtgcccactcttcGaatagctgtcaatacttggc	9	11	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87179872	T	T	87179872	4	4	26	1	0	0	0	0	0	1	0	0	40	1059	37	3	2778	3	ABCB1	7	87179872	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	147410	87179872	71958791	701	42785											
RUNDC3B	154661	broad.mit.edu	37	chr7	87459369	87459369	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgtgtaaaagccaaaaCtttttatgttgtaaatgttt	6	3	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87459369	A	A	87459369	1	1	26	0	1	0	0	0	0	0	0	0	13856	580	20	3		3	RUNDC3B	7	87459369	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	279497	87459369	71679294	702	42786											
ZNF804B	219578	broad.mit.edu	37	chr7	88962744	88962744	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcaactccagcaaggaAttttccccattaagaatggc	7	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88962744	T	T	88962744	3	4	26	1	0	0	0	0	1	0	0	0	18300	101	4	5	462	5	ZNF804B	7	88962744	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1503375	88962744	70175919	703	42787											
ZNF804B	219578	broad.mit.edu	37	chr7	88966056	88966056	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttcgactctgactccaAccattatccctgcacacccc	3	18	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88966056	G	G	88966056	3	3	26	1	0	0	0	0	1	0	0	0	18300	43	2	5	3774	5	ZNF804B	7	88966056	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3312	88966056	70172607	704	42788											
STEAP1	26872	broad.mit.edu	37	chr7	89790136	89790136	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagcataaggacacgggagaGaccagcatgctaaaaagacc	11	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89790136	C	C	89790136	3	2	26	1	0	0	0	0	1	0	0	0	15395	933	33	4	108	4	STEAP1	7	89790136	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	824080	89790136	69348527	705	42789											
C7orf63	79846	broad.mit.edu	37	chr7	89874907	89874907	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagggggtgggagtgaaGtctcgagacggggtccagac	21	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89874907	T	T	89874907	1	4	26	0	1	0	0	0	0	0	0	0	2434	1044	36	3		3	C7orf63	7	89874907	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	84771	89874907	69263756	706	42790											
SAMD9	54809	broad.mit.edu	37	chr7	92733059	92733059	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcctgacggttcattgcCccataggtgattaaactggt	9	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92733059	A	A	92733059	2	1	26	1	0	0	0	0	0	0	0	1	13937	610	22	2		2	SAMD9	7	92733059	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2858152	92733059	66405604	707	42791											
GNG11	2791	broad.mit.edu	37	chr7	93555330	93555330	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgtattcaattatacttAtttcattaaggcgtagggac	7	5	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93555330	G	G	93555330	1	3	26	0	1	0	0	0	0	0	0	0	6588	464	16	5		5	GNG11	7	93555330	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	822271	93555330	65583333	708	42792											
TRRAP	8295	broad.mit.edu	37	chr7	98574387	98574387	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagagcatcaccccgccGcagcaggtgagggtgcgcct	15	14	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98574387	T	T	98574387	2	4	26	1	0	0	0	0	0	0	0	1	16726	1074	38	3		3	TRRAP	7	98574387	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	5019057	98574387	60564276	709	42793											
AZGP1	563	broad.mit.edu	37	chr7	99565973	99565973	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaatgtagtcctttccatCatagtaatatttccagaatg	5	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99565973	T	T	99565973	3	4	26	1	0	0	0	0	1	0	0	0	1244	826	29	4	486	4	AZGP1	7	99565973	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	991586	99565973	59572690	710	42794											
C7orf43	55262	broad.mit.edu	37	chr7	99754179	99754179	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacactgggcaggctaggaGtggtgagagagggatgctgg	21	5	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99754179	C	C	99754179	1	2	26	0	1	0	0	0	0	0	0	0	2418	1044	36	4		4	C7orf43	7	99754179	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	188206	99754179	59384484	711	42795											
ZAN	7455	broad.mit.edu	37	chr7	100349669	100349669	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accattccctcagaaaaaccCaccatttccacagaaaaacc	2	16	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349669	A	A	100349669	2	1	26	1	0	0	0	0	0	0	0	1	17640	581	21	2		2	ZAN	7	100349669	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	595490	100349669	58788994	712	42796											
MUC17	140453	broad.mit.edu	37	chr7	100685732	100685733	+	Missense_Mutation	DNP	CC	AA	AA													tcagttcatctcctgtgactCctgaaggtaccaccatgcca							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	100685733	AA	AA	100685732	3	1	26	1	0	0	0	0	1	0	0	0	10068	855	30	3	11045	3	MUC17	7	100685732	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	336063	100685732	58452931	713	42797											
ZNHIT1	10467	broad.mit.edu	37	chr7	100866745	100866745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgccaagcaacggatcacCcttgacccctaggaaagaaa	9	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100866745	A	A	100866745	1	1	26	0	1	0	0	0	0	0	0	0	18335	638	22	2		2	ZNHIT1	7	100866745	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	181013	100866745	58271918	714	42798											
SLC26A5	375611	broad.mit.edu	37	chr7	103030858	103030858	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgaaaaaaacttcacccaAgtccacattacacacacctg	3	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103030858	T	T	103030858	1	4	26	0	1	0	0	0	0	0	0	0	14634	87	3	5		5	SLC26A5	7	103030858	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2164113	103030858	56107805	715	42799											
RELN	5649	broad.mit.edu	37	chr7	103389916	103389916	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggtggtaggagtcaaagtCatctctcaggataatgctgt	12	6	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103389916	A	A	103389916	3	1	26	1	0	0	0	0	1	0	0	0	13328	826	29	3	10009	3	RELN	7	103389916	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	359058	103389916	55748747	716	42800											
SLC26A3	1811	broad.mit.edu	37	chr7	107431513	107431513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatgattccagaaagcaCtgtgactgatgccgccgccg	12	12	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107431513	A	A	107431513	3	1	26	1	0	0	0	0	1	0	0	0	14632	565	20	3	1812	3	SLC26A3	7	107431513	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4041597	107431513	51707150	717	42801											
TFEC	22797	broad.mit.edu	37	chr7	115590856	115590856	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtcattggttctctcctcCcttcttccctcccattcatt	3	16	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115590856	G	G	115590856	1	3	26	0	1	0	0	0	0	0	0	0	15925	638	22	4		4	TFEC	7	115590856	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	8159343	115590856	43547807	718	42802											
CTTNBP2	83992	broad.mit.edu	37	chr7	117375301	117375301	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaagcttgcttctcagcAtggtccctttattagcgtta	8	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117375301	T	T	117375301	1	4	26	0	1	0	0	0	0	0	0	0	4079	232	8	5		5	CTTNBP2	7	117375301	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1784445	117375301	41763362	719	42803											
CTTNBP2	83992	broad.mit.edu	37	chr7	117451049	117451049	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccttcctgcgagcctggaAcaaaattagagaaatgtatt	8	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117451049	T	T	117451049	1	4	26	0	1	0	0	0	0	0	0	0	4079	58	2	5		5	CTTNBP2	7	117451049	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	75748	117451049	41687614	720	42804											
KCND2	3751	broad.mit.edu	37	chr7	119914622	119914622	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggaggaagtgggtgactTttggctgcttcggtgaccca	15	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119914622	C	C	119914622	1	2	26	0	1	0	0	0	0	0	0	0	8089	1856	64	5		5	KCND2	7	119914622	5'UTR	SNP	T	TCGA-05-4432-01A-01D-1265-08	2463573	119914622	39224041	721	42805											
C7orf58	79974	broad.mit.edu	37	chr7	120774023	120774023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgcaaaactatttaGcttcattagcaatcaaaaat	3	6	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120774023	T	T	120774023	1	4	26	0	1	0	0	0	0	0	0	0	2430	986	34	3		3	C7orf58	7	120774023	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	859401	120774023	38364640	722	42806											
PTPRZ1	5803	broad.mit.edu	37	chr7	121668644	121668644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttttacttagaggacaGtacatcccctagagttatat	6	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121668644	T	T	121668644	3	4	26	1	0	0	0	0	1	0	0	0	12922	1029	36	3	5081	3	PTPRZ1	7	121668644	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	894621	121668644	37470019	723	42807											
AASS	10157	broad.mit.edu	37	chr7	121738539	121738539	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttttgccaccaagaagccCagcttctcttcttgtttaca	6	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121738539	T	T	121738539	2	4	26	1	0	0	0	0	0	0	0	1	24	581	21	4		4	AASS	7	121738539	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	69895	121738539	37400124	724	42808											
WASL	8976	broad.mit.edu	37	chr7	123346396	123346396	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatttttttgcttcttctTcattggcaaaattaagagca	6	6	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123346396	C	C	123346396	3	2	26	1	0	0	0	0	1	0	0	0	17383	1783	62	5	1178	5	WASL	7	123346396	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1607857	123346396	35792267	725	42809											
SPAM1	6677	broad.mit.edu	37	chr7	123594227	123594227	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagggaaggatttcctggtAgagactataaaattgggaaa	13	4	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123594227	G	G	123594227	2	3	26	1	0	0	0	0	0	0	0	1	15102	407	15	5		5	SPAM1	7	123594227	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	247831	123594227	35544436	726	42810											
GCC1	79571	broad.mit.edu	37	chr7	127225205	127225205	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtccttcttgctcgggCcgcccccgaaattcatccca	8	17	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127225205	T	T	127225205	3	4	26	1	0	0	0	0	1	0	0	0	6347	739	26	4	2303	4	GCC1	7	127225205	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	3630978	127225205	31913458	727	42811											
FSCN3	29999	broad.mit.edu	37	chr7	127236391	127236391	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctctgcagatggtgaggTgcgtgctgcttctgagcgct	14	10	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127236391	A	A	127236391	3	1	26	1	0	0	0	0	1	0	0	0	6129	1696	59	5	861	5	FSCN3	7	127236391	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	11186	127236391	31902272	728	42812											
LRRC4	64101	broad.mit.edu	37	chr7	127670726	127670726	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcataattcaccatcgcctgGgattttggctcggaaaggag	11	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127670726	A	A	127670726	1	1	26	0	1	0	0	0	0	0	0	0	9084	1247	43	4		4	LRRC4	7	127670726	5'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	434335	127670726	31467937	729	42813											
SMO	6608	broad.mit.edu	37	chr7	128849110	128849110	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggcttggtaacgtcctgtCctgcccctgtcctccacagg	11	15	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128849110	A	A	128849110	1	1	26	0	1	0	0	0	0	0	0	0	14914	870	30	3		3	SMO	7	128849110	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1178384	128849110	30289553	730	42814											
PLXNA4	91584	broad.mit.edu	37	chr7	131878739	131878739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgccctgggtttgctcaCagagctctagaggggcccag	13	13	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131878739	A	A	131878739	1	1	26	0	1	0	0	0	0	0	0	0	12217	493	17	3		3	PLXNA4	7	131878739	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3029629	131878739	27259924	731	42815											
PLXNA4	91584	broad.mit.edu	37	chr7	131908336	131908336	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcaggtcttggggtcatGggtgcagacatgccggtatt	17	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131908336	A	A	131908336	3	1	26	1	0	0	0	0	1	0	0	0	12217	1348	47	4	3733	4	PLXNA4	7	131908336	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	29597	131908336	27230327	732	42816											
PLXNA4	91584	broad.mit.edu	37	chr7	132174174	132174174	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaattccacgcaccatgtcGgacactcccaggggagcatt	11	13	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132174174	T	T	132174174	2	4	26	1	0	0	0	0	0	0	0	1	12217	1103	39	1		1	PLXNA4	7	132174174	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	265838	132174174	26964489	733	42817											
AKR1B10	57016	broad.mit.edu	37	chr7	134217844	134217844	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgggaggtaggttcccAgcttcctctaagtgtgctgg	14	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134217844	T	T	134217844	1	4	26	0	1	0	0	0	0	0	0	0	467	203	7	5		5	AKR1B10	7	134217844	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2043670	134217844	24920819	734	42818											
AKR1B15	441282	broad.mit.edu	37	chr7	134252977	134252977	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaatatcgccacattgactGtgcctatttctatgagaatc	7	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134252977	C	C	134252977	3	2	26	1	0	0	0	0	1	0	0	0	468	1377	48	4	224	4	AKR1B15	7	134252977	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	35133	134252977	24885686	735	42819											
STRA8	346673	broad.mit.edu	37	chr7	134931137	134931137	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcttcgagagggagctttAggggtgcgagacggcgccgc	18	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134931137	C	C	134931137	1	2	26	0	1	0	0	0	0	0	0	0	15441	435	15	5		5	STRA8	7	134931137	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	678160	134931137	24207526	736	42820											
TBXAS1	6916	broad.mit.edu	37	chr7	139655295	139655295	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacagatgtggttgccagcGtcgcctttggcaccccggtg	13	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139655295	C	C	139655295	3	2	26	1	0	0	0	0	1	0	0	0	15786	1145	40	4	748	4	TBXAS1	7	139655295	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4724158	139655295	19483368	737	42821											
MKRN1	23608	broad.mit.edu	37	chr7	140154936	140154936	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cactttctgtctctgtggctCctctctacggccatcagggt	9	14	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140154936	G	G	140154936	3	3	26	1	0	0	0	0	1	0	0	0	9699	864	30	4	261	4	MKRN1	7	140154936	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	499641	140154936	18983727	738	42822											
OR9A4	130075	broad.mit.edu	37	chr7	141619029	141619029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcattacttggagcaatGgctgtggaccgttatgtggc	13	8	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141619029	T	T	141619029	3	4	26	1	0	0	0	0	1	0	0	0	11343	1348	47	2	356	2	OR9A4	7	141619029	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1464093	141619029	17519634	739	42823											
MGAM	8972	broad.mit.edu	37	chr7	141763284	141763284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtgaggtatgtctgtGtttggcatttctaggatatg	12	3	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141763284	A	A	141763284	1	1	26	0	1	0	0	0	0	0	0	0	9634	1392	48	4		4	MGAM	7	141763284	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	144255	141763284	17375379	740	42824											
MGAM	8972	broad.mit.edu	37	chr7	141778754	141778754	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccttcccttccacacccgtGaacccccttcgcctggatgt	7	19	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141778754	C	C	141778754	1	2	26	0	1	0	0	0	0	0	0	0	9634	1305	45	4		4	MGAM	7	141778754	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	15470	141778754	17359909	741	42825											
TRPV5	56302	broad.mit.edu	37	chr7	142625177	142625177	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctgatcctccttggcatCcatacctctcgtttatcaga	7	14	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142625177	A	A	142625177	1	1	26	0	1	0	0	0	0	0	0	0	16724	870	30	3		3	TRPV5	7	142625177	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	846423	142625177	16513486	742	42826											
CLCN1	1180	broad.mit.edu	37	chr7	143043905	143043905	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgaaaaggaggcatcggTggtcctggccagggagggat	18	6	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143043905	C	C	143043905	1	2	26	0	1	0	0	0	0	0	0	0	3493	1711	59	5		5	CLCN1	7	143043905	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	418728	143043905	16094758	743	42827											
EPHA1	2041	broad.mit.edu	37	chr7	143096454	143096454	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgctctgctgggggcaCgtgagacaatggggtgtgtc	18	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143096454	T	T	143096454	2	4	26	1	0	0	0	0	0	0	0	1	5207	523	19	4		4	EPHA1	7	143096454	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	52549	143096454	16042209	744	42828											
OR2A5	393046	broad.mit.edu	37	chr7	143747932	143747932	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtgcacagtcctggctgtCacttcttgggcatgtggttc	13	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143747932	T	T	143747932	2	4	26	1	0	0	0	0	0	0	0	1	11075	813	29	4		4	OR2A5	7	143747932	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	651478	143747932	15390731	745	42829											
SSPO	23145	broad.mit.edu	37	chr7	149508907	149508907	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaggaaagccatcaggagAgatggggggcagaggcacca	19	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149508907	T	T	149508907	1	4	26	0	1	0	0	0	0	0	0	0	15307	319	11	5		5	SSPO	7	149508907	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	5760975	149508907	9629756	746	42830											
MLL3	58508	broad.mit.edu	37	chr7	151884727	151884727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatcatacacaatcatttaAgcagactaatttatatataa	2	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151884727	G	G	151884727	1	3	26	0	1	0	0	0	0	0	0	0	9715	87	3	5		5	MLL3	7	151884727	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2375820	151884727	7253936	747	42831											
WDR60	55112	broad.mit.edu	37	chr7	158683963	158683963	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctctccattagcatggccAcgaggaaggctcttctgtgt	10	12	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158683963	G	G	158683963	3	3	26	1	0	0	0	0	1	0	0	0	17438	159	6	5	1028	5	WDR60	7	158683963	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	6799236	158683963	454700	748	42832											
CSMD1	64478	broad.mit.edu	37	chr8	2820078	2820078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaatggagatttgcactGgaagaagacttcggacttat	10	5	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2820078	T	T	2820078	3	4	26	1	0	0	0	0	1	0	0	0	3978	1357	47	2	1196	2	CSMD1	8	2820078	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08		2820078	143543944	749	42833											
CSMD1	64478	broad.mit.edu	37	chr8	2857502	2857502	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacagacaggcgtttgtccAgaccacttgtggtcttgcag	11	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2857502	G	G	2857502	2	3	26	1	0	0	0	0	0	0	0	1	3978	175	7	5		5	CSMD1	8	2857502	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	37424	2857502	143506520	750	42834											
CSMD1	64478	broad.mit.edu	37	chr8	2965290	2965290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgcctgtggaaccgctGggggaggttgacatttcttg	14	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2965290	T	T	2965290	3	4	26	1	0	0	0	0	1	0	0	0	3978	1348	47	2	4013	2	CSMD1	8	2965290	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	107788	2965290	143398732	751	42835											
CSMD1	64478	broad.mit.edu	37	chr8	3008972	3008972	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtctaagttgttggggtaaGaacctgggaagccggggctc	16	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3008972	T	T	3008972	3	4	26	1	0	0	0	0	1	0	0	0	3978	942	33	3	4840	3	CSMD1	8	3008972	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	43682	3008972	143355050	752	42836											
CSMD1	64478	broad.mit.edu	37	chr8	3165786	3165786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcaacatggtgcaagcaCcctaaggcctggcttttgca	10	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3165786	A	A	3165786	1	1	26	0	1	0	0	0	0	0	0	0	3978	522	18	3		3	CSMD1	8	3165786	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	156814	3165786	143198236	753	42837											
CSMD1	64478	broad.mit.edu	37	chr8	3205575	3205575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggtggatgcccttgccgGcttctgtttctattttatag	10	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3205575	T	T	3205575	3	4	26	1	0	0	0	0	1	0	0	0	3978	1203	42	3	7477	3	CSMD1	8	3205575	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	39789	3205575	143158447	754	42838											
CSMD1	64478	broad.mit.edu	37	chr8	3253859	3253859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggacgaactggctggcCcatctctgacctccaaggtg	14	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3253859	A	A	3253859	3	1	26	1	0	0	0	0	1	0	0	0	3978	623	22	2	8460	2	CSMD1	8	3253859	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	48284	3253859	143110163	755	42839											
CSMD1	64478	broad.mit.edu	37	chr8	3265427	3265427	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcgtacttactggtgtAagtgatgttgaaccctctgc	13	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3265427	C	C	3265427	3	2	26	1	0	0	0	0	1	0	0	0	3978	362	13	5	8857	5	CSMD1	8	3265427	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	11568	3265427	143098595	756	42840											
SGCZ	137868	broad.mit.edu	37	chr8	14181709	14181710	+	Missense_Mutation	DNP	CC	AA	AA													tgactctcagatttcccataCcatcctacaagcaatgaaat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	14181710	AA	AA	14181709	3	1	26	1	0	0	0	0	1	0	0	0	14317	507	18	3	723	3	SGCZ	8	14181709	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	10916282	14181709	132182313	757	42841											
SLC18A1	6570	broad.mit.edu	37	chr8	20008163	20008163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctactgttcgtcccagatcCcgaggctacataccgaccca	7	16	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20008163	A	A	20008163	1	1	26	0	1	0	0	0	0	0	0	0	14538	638	22	2		2	SLC18A1	8	20008163	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	5826454	20008163	126355859	758	42842											
SLC18A1	6570	broad.mit.edu	37	chr8	20022502	20022502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgttctgtgagcagccGtggctgcttgaagcccagac	13	11	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20022502	T	T	20022502	1	4	26	0	1	0	0	0	0	0	0	0	14538	1160	40	3		3	SLC18A1	8	20022502	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	14339	20022502	126341520	759	42843											
SFTPC	6440	broad.mit.edu	37	chr8	22020821	22020821	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctccctctcctccagacCttttttgcctgagccccaga	5	18	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22020821	T	T	22020821	1	4	26	0	1	0	0	0	0	0	0	0	14305	696	24	4		4	SFTPC	8	22020821	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1998319	22020821	124343201	760	42844											
SORBS3	10174	broad.mit.edu	37	chr8	22414373	22414373	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcgctgggtcaagtacgaGggaatcgggcccgtggacga	17	9	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22414373	A	A	22414373	2	1	26	1	0	0	0	0	0	0	0	1	15043	991	35	4		4	SORBS3	8	22414373	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	393552	22414373	123949649	761	42845											
RHOBTB2	23221	broad.mit.edu	37	chr8	22864308	22864308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaaggagctgggcatcCcctactatgagaccagcgtg	13	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22864308	A	A	22864308	3	1	26	1	0	0	0	0	1	0	0	0	13443	623	22	2	649	2	RHOBTB2	8	22864308	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	449935	22864308	123499714	762	42846											
ADAM7	8756	broad.mit.edu	37	chr8	24324541	24324541	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttaccccaaatgaaacacCttttattttcttgatgatgt	4	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24324541	T	T	24324541	1	4	26	0	1	0	0	0	0	0	0	0	251	696	24	4		4	ADAM7	8	24324541	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1460233	24324541	122039481	763	42847											
SCARA3	51435	broad.mit.edu	37	chr8	27517030	27517030	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacacacagcatggagaaaTccttcgcaatgtcaccatcc	8	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27517030	C	C	27517030	3	2	26	1	0	0	0	0	1	0	0	0	13991	1435	50	5	1361	5	SCARA3	8	27517030	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3192489	27517030	118846992	764	42848											
C8orf80	389643	broad.mit.edu	37	chr8	27898648	27898648	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggctgctccatgcaggCgaagcactgtgcgatggcct	14	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27898648	T	T	27898648	3	4	26	1	0	0	0	0	1	0	0	0	2465	768	27	4	887	4	C8orf80	8	27898648	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	381618	27898648	118465374	765	42849											
KIF13B	23303	broad.mit.edu	37	chr8	29048654	29048654	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgatagaactgttcataaTagtgaaataaaacaacttac	5	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29048654	C	C	29048654	1	2	26	0	1	0	0	0	0	0	0	0	8345	1421	49	5		5	KIF13B	8	29048654	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1150006	29048654	117315368	766	42850											
TEX15	56154	broad.mit.edu	37	chr8	30695247	30695247	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcccatggtctggtgaaaaTgtgccatgtacacttttttg	10	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30695247	C	C	30695247	2	2	26	1	0	0	0	0	0	0	0	1	15901	1451	51	5		5	TEX15	8	30695247	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	1646593	30695247	115668775	767	42851											
NRG1	3084	broad.mit.edu	37	chr8	32453306	32453307	+	Intron	DNP	GG	TT	TT													ttctctttgaaagattgcctGgtgatcagagttgtttttca							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32453307	TT	TT	32453306	1	4	26	0	1	0	0	0	0	0	0	0	10742	1363	47	2		2	NRG1	8	32453306	Intron	DNP	GG	TCGA-05-4432-01A-01D-1265-08	1758059	32453306	113910716	768	42852											
UNC5D	137970	broad.mit.edu	37	chr8	35453319	35453319	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctcagttgctaaacacggtGaagaaattgtctaggaaata	10	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35453319	A	A	35453319	1	1	26	0	1	0	0	0	0	0	0	0	17121	1305	45	4		4	UNC5D	8	35453319	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3000013	35453319	110910703	769	42853											
UNC5D	137970	broad.mit.edu	37	chr8	35583678	35583678	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttaccaggtaactccCtgctcctgaattctgccatg	6	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35583678	T	T	35583678	2	4	26	1	0	0	0	0	0	0	0	1	17121	680	24	4		4	UNC5D	8	35583678	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	130359	35583678	110780344	770	42854											
BRF2	55290	broad.mit.edu	37	chr8	37704293	37704293	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagactccaagaaaaaaaaaAagagatggccaaaggtcaaa	8	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37704293	G	G	37704293	1	3	26	0	1	0	0	0	0	0	0	0	1520	29	1	5		5	BRF2	8	37704293	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2120615	37704293	108659729	771	42855											
PLAT	5327	broad.mit.edu	37	chr8	42044933	42044933	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctgcagtagttgtggttCcccaggcccagcctgatggc	12	14	0	1	rs115361478	byFrequency;by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42044933	T	T	42044933	2	4	26	1	0	0	0	0	0	0	0	1	12116	842	30	4		4	PLAT	8	42044933	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	4340640	42044933	104319089	772	42856											
PLAT	5327	broad.mit.edu	37	chr8	42046539	42046539	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgagcacagggcgcagccAtgactgatgttgctggtata	13	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42046539	G	G	42046539	3	3	26	1	0	0	0	0	1	0	0	0	12116	217	8	5	1566	5	PLAT	8	42046539	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1606	42046539	104317483	773	42857											
RNF170	81790	broad.mit.edu	37	chr8	42725241	42725241	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagaactgctgtcgagtGgcagcaggtgcatcctaata	13	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42725241	A	A	42725241	2	1	26	1	0	0	0	0	0	0	0	1	13573	1335	47	4		4	RNF170	8	42725241	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	678702	42725241	103638781	774	42858											
HOOK3	84376	broad.mit.edu	37	chr8	42814274	42814274	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcacccttccctcttcaGgaaagacaggggggagatgt	12	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42814274	A	A	42814274	1	1	26	0	1	0	0	0	0	0	0	0	7351	1015	35	4		4	HOOK3	8	42814274	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	89033	42814274	103549748	775	42859											
SNTG1	54212	broad.mit.edu	37	chr8	51465601	51465601	+	Intron	SNP	C	A	A													ttgatctgatttgttctgaaCatctgcaggcagaatgcctt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51465601	A	A	51465601	1	1	26	0	1	0	0	0	0	0	0	0	14988	493	17	3		3	SNTG1	8	51465601	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	8651327	51465601	94898421	776	42860	221	2									
SNTG1	54212	broad.mit.edu	37	chr8	51465603	51465603	+	Intron	SNP	T	A	A													gatctgatttgttctgaacaTctgcaggcagaatgcctttc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51465603	A	A	51465603	1	1	26	0	1	0	0	0	0	0	0	0	14988	1450	50	5		5	SNTG1	8	51465603	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2	51465603	94898419	777	42861	221	2									
SNTG1	54212	broad.mit.edu	37	chr8	51621445	51621445	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactttctgttctacctaGtgcaagacctatgcatgtgt	7	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51621445	T	T	51621445	5	4	26	1	0	0	0	0	0	0	1	0	14988	1043	36	3	1249	3	SNTG1	8	51621445	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	155842	51621445	94742577	778	42862											
PXDNL	137902	broad.mit.edu	37	chr8	52321066	52321066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaatgatgcctgcattcaCgttggggttgtagcctcggt	13	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52321066	A	A	52321066	3	1	26	1	0	0	0	0	1	0	0	0	12956	536	19	3	1301	3	PXDNL	8	52321066	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	699621	52321066	94042956	779	42863											
ST18	9705	broad.mit.edu	37	chr8	53084677	53084677	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgtttcagaatcacacctGttctcacaagggataaattt	6	9	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53084677	C	C	53084677	3	2	26	1	0	0	0	0	1	0	0	0	15330	1368	48	4	2467	4	ST18	8	53084677	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	763611	53084677	93279345	780	42864											
RB1CC1	9821	broad.mit.edu	37	chr8	53580774	53580774	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgacaaggaaacacataCgaatacaattttcagcaaat	5	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53580774	T	T	53580774	1	4	26	0	1	0	0	0	0	0	0	0	13207	551	19	4		4	RB1CC1	8	53580774	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	496097	53580774	92783248	781	42865											
XKR4	114786	broad.mit.edu	37	chr8	56270117	56270117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttaactcataagccccCgaggtaattgtttcttgtgc	8	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56270117	A	A	56270117	1	1	26	0	1	0	0	0	0	0	0	0	17560	667	23	1		1	XKR4	8	56270117	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2689343	56270117	90093905	782	42866											
XKR4	114786	broad.mit.edu	37	chr8	56364860	56364860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctgatgcatttctccttGgtcagcgcggccaccgggaa	12	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56364860	T	T	56364860	1	4	26	0	1	0	0	0	0	0	0	0	17560	1363	47	2		2	XKR4	8	56364860	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	94743	56364860	89999162	783	42867											
UBXN2B	137886	broad.mit.edu	37	chr8	59338120	59338120	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttttgtttttgttttcttGccttttaccctcttttcggc	5	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59338120	C	C	59338120	1	2	26	0	1	0	0	0	0	0	0	0	17041	1334	46	4		4	UBXN2B	8	59338120	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2973260	59338120	87025902	784	42868											
C8orf46	254778	broad.mit.edu	37	chr8	67427971	67427971	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccccaagggaagacgttCctgtgagggtcccaacagtg	12	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67427971	A	A	67427971	1	1	26	0	1	0	0	0	0	0	0	0	2457	870	30	3		3	C8orf46	8	67427971	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	8089851	67427971	78936051	785	42869											
CPA6	57094	broad.mit.edu	37	chr8	68430098	68430098	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gataaataacctaaatacaaCtaccatttggttcagtttag	5	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68430098	G	G	68430098	1	3	26	0	1	0	0	0	0	0	0	0	3826	580	20	4		4	CPA6	8	68430098	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1002127	68430098	77933924	786	42870											
PREX2	80243	broad.mit.edu	37	chr8	68989581	68989581	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatggagcaaagctgccAcaaagcctttagttgcctat	8	9	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68989581	T	T	68989581	1	4	26	0	1	0	0	0	0	0	0	0	12583	174	6	5		5	PREX2	8	68989581	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	559483	68989581	77374441	787	42871											
STAU2	27067	broad.mit.edu	37	chr8	74526206	74526206	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataacctattaaatacaagTaaaatattaaataatggata	3	3	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74526206	C	C	74526206	1	2	26	0	1	0	0	0	0	0	0	0	15391	1653	57	5		5	STAU2	8	74526206	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	5536625	74526206	71837816	788	42872											
ZFHX4	79776	broad.mit.edu	37	chr8	77620306	77620306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagtgacatccatttccGttggcacagagtagaaaagg	11	8	0	3	rs139930164	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77620306	T	T	77620306	1	4	26	0	1	0	0	0	0	0	0	0	17761	1160	40	3		3	ZFHX4	8	77620306	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3094100	77620306	68743716	789	42873											
ZFHX4	79776	broad.mit.edu	37	chr8	77620318	77620318	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatttccgttggcacagagTagaaaagggaattaactctt	9	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77620318	C	C	77620318	1	2	26	0	1	0	0	0	0	0	0	0	17761	1653	57	5		5	ZFHX4	8	77620318	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	12	77620318	68743704	790	42874											
ZFHX4	79776	broad.mit.edu	37	chr8	77765002	77765002	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgacaaactagaatgtGgaacatgtggtaaattgttt	9	5	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77765002	T	T	77765002	4	4	26	1	0	0	0	0	0	1	0	0	17761	1349	47	2	5879	2	ZFHX4	8	77765002	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	144684	77765002	68599020	791	42875											
ZFHX4	79776	broad.mit.edu	37	chr8	77768314	77768314	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagattacttggctccgAccacggttcggcagctgatg	12	10	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77768314	T	T	77768314	3	4	26	1	0	0	0	0	1	0	0	0	17761	275	10	5	9191	5	ZFHX4	8	77768314	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3312	77768314	68595708	792	42876											
ZFHX4	79776	broad.mit.edu	37	chr8	77768330	77768330	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgaccacggttcggcagcTgatggcacagcaagaacttg	12	12	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77768330	A	A	77768330	3	1	26	1	0	0	0	0	1	0	0	0	17761	1580	55	5	9207	5	ZFHX4	8	77768330	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	16	77768330	68595692	793	42877											
CA1	759	broad.mit.edu	37	chr8	86240888	86240888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcaacatttgatagaagGctgcggaattgtgccagcta	10	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86240888	T	T	86240888	3	4	26	1	0	0	0	0	1	0	0	0	2536	1194	42	3	102	3	CA1	8	86240888	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	8472558	86240888	60123134	794	42878											
CNGB3	54714	broad.mit.edu	37	chr8	87670873	87670873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagactctgagcctcttGgctcttcagctctaccatct	7	14	6	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87670873	T	T	87670873	1	4	26	0	1	0	0	0	0	0	0	0	3633	1363	47	2		2	CNGB3	8	87670873	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1429985	87670873	58693149	795	42879											
MMP16	4325	broad.mit.edu	37	chr8	89053712	89053712	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccactcttgcatagagcGtttacagtacagtatgtggc	9	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89053712	A	A	89053712	3	1	26	1	0	0	0	0	1	0	0	0	9748	1145	40	4	26	4	MMP16	8	89053712	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1382839	89053712	57310310	796	42880											
RUNX1T1	862	broad.mit.edu	37	chr8	93023355	93023355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtataaatacattagcCtgttggtaaatagtaaaaac	7	4	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93023355	A	A	93023355	1	1	26	0	1	0	0	0	0	0	0	0	13858	696	24	2		2	RUNX1T1	8	93023355	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3969643	93023355	53340667	797	42881											
PLEKHF2	79666	broad.mit.edu	37	chr8	96167117	96167117	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctctctctgttttgttctAgccatgaatttgcctgagaa	7	10	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96167117	T	T	96167117	1	4	26	0	1	0	0	0	0	0	0	0	12162	435	15	5		5	PLEKHF2	8	96167117	3'UTR	SNP	A	TCGA-05-4432-01A-01D-1265-08	3143762	96167117	50196905	798	42882											
MATN2	4147	broad.mit.edu	37	chr8	98973692	98973692	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagctctgtgtgaatgtgCcgggctccttcgtctgccag	13	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98973692	T	T	98973692	3	4	26	1	0	0	0	0	1	0	0	0	9426	739	26	4	906	4	MATN2	8	98973692	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2806575	98973692	47390330	799	42883											
VPS13B	157680	broad.mit.edu	37	chr8	100115083	100115083	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaatatgctaaataatAaccacctttctcatacatta	4	8	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100115083	T	T	100115083	1	4	26	0	1	0	0	0	0	0	0	0	17317	377	13	5		5	VPS13B	8	100115083	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1141391	100115083	46248939	800	42884											
VPS13B	157680	broad.mit.edu	37	chr8	100832227	100832227	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatatgttagaactttgttGatagaacttctgccctgggc	9	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100832227	T	T	100832227	3	4	26	1	0	0	0	0	1	0	0	0	17317	1281	45	3	9330	3	VPS13B	8	100832227	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	717144	100832227	45531795	801	42885											
RIMS2	9699	broad.mit.edu	37	chr8	105261642	105261642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgaaacgatgttaaacCaaggtctttgactctatttt	7	6	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105261642	A	A	105261642	1	1	26	0	1	0	0	0	0	0	0	0	13479	609	21	2		2	RIMS2	8	105261642	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4429415	105261642	41102380	802	42886											
DPYS	1807	broad.mit.edu	37	chr8	105456612	105456612	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccactgcctctgggcggcaCagctcgtggccctcagggcc	13	17	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105456612	G	G	105456612	2	3	26	1	0	0	0	0	0	0	0	1	4786	465	17	4		4	DPYS	8	105456612	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	194970	105456612	40907410	803	42887											
CSMD3	114788	broad.mit.edu	37	chr8	113267788	113267788	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgataaagctatcccaaTgaaaaaatttattttttagc	4	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113267788	C	C	113267788	1	2	26	0	1	0	0	0	0	0	0	0	3980	1479	51	5		5	CSMD3	8	113267788	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	7811176	113267788	33096234	804	42888											
CSMD3	114788	broad.mit.edu	37	chr8	113323244	113323244	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcatcccatgcatgataCccataggaagactttctgca	9	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113323244	A	A	113323244	2	1	26	1	0	0	0	0	0	0	0	1	3980	494	18	3		3	CSMD3	8	113323244	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	55456	113323244	33040778	805	42889											
CSMD3	114788	broad.mit.edu	37	chr8	113516125	113516125	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctctggtaacttgctgtcTtgaaaacttccaatcagtgg	8	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113516125	C	C	113516125	2	2	26	1	0	0	0	0	0	0	0	1	3980	1606	56	5		5	CSMD3	8	113516125	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	192881	113516125	32847897	806	42890											
CSMD3	114788	broad.mit.edu	37	chr8	113650900	113650900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaaagttactgaatgaGcccttttgttttttattttc	5	5	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113650900	T	T	113650900	1	4	26	0	1	0	0	0	0	0	0	0	3980	986	34	3		3	CSMD3	8	113650900	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	134775	113650900	32713122	807	42891											
CSMD3	114788	broad.mit.edu	37	chr8	113697600	113697600	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactcaaatttatagaaataTattatatgggaaaaaaacag	5	3	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113697600	A	A	113697600	1	1	26	0	1	0	0	0	0	0	0	0	3980	1421	49	5		5	CSMD3	8	113697600	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	46700	113697600	32666422	808	42892											
CSMD3	114788	broad.mit.edu	37	chr8	113988189	113988189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccttggacgtgttggggtCcagacctgaatttctgagac	13	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113988189	A	A	113988189	3	1	26	1	0	0	0	0	1	0	0	0	3980	855	30	3	10164	3	CSMD3	8	113988189	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	290589	113988189	32375833	809	42893											
CSMD3	114788	broad.mit.edu	37	chr8	114111174	114111174	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactggatcctctcattgttCctccacaagcatcttcagct	5	15	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114111174	T	T	114111174	3	4	26	1	0	0	0	0	1	0	0	0	3980	855	30	4	10663	4	CSMD3	8	114111174	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	122985	114111174	32252848	810	42894											
TRPS1	7227	broad.mit.edu	37	chr8	116616041	116616041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggttcagccctctttctaTggattttttctattatttta	5	9	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116616041	C	C	116616041	1	2	26	0	1	0	0	0	0	0	0	0	16718	1479	51	5		5	TRPS1	8	116616041	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2504867	116616041	29747981	811	42895											
MED30	90390	broad.mit.edu	37	chr8	118543087	118543087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagttgttagtttttacaTtttatgttttagagttattg	9	1	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118543087	C	C	118543087	1	2	26	0	1	0	0	0	0	0	0	0	9541	1508	52	5		5	MED30	8	118543087	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1927046	118543087	27820935	812	42896											
PHF20L1	51105	broad.mit.edu	37	chr8	133851902	133851902	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaacactgttggccttttGatggtccagagtaacagttt	9	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133851902	T	T	133851902	1	4	26	0	1	0	0	0	0	0	0	0	11927	1305	45	3		3	PHF20L1	8	133851902	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	15308815	133851902	12512120	813	42897											
TG	7038	broad.mit.edu	37	chr8	133941335	133941335	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttagtgatgcagaagtttGagaaggttccagaatcaaag	11	4	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133941335	C	C	133941335	3	2	26	1	0	0	0	0	1	0	0	0	15936	1291	45	4	4804	4	TG	8	133941335	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	89433	133941335	12422687	814	42898											
TG	7038	broad.mit.edu	37	chr8	133941469	133941469	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggagatatgcactcagaAgaaggtgtggaaataagctc	14	5	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133941469	C	C	133941469	1	2	26	0	1	0	0	0	0	0	0	0	15936	87	3	5		5	TG	8	133941469	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	134	133941469	12422553	815	42899											
ST3GAL1	6482	broad.mit.edu	37	chr8	134478044	134478044	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtcccaggactgaaccTtgccttcctgagcctgagcc	9	15	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134478044	A	A	134478044	1	1	26	0	1	0	0	0	0	0	0	0	15332	1624	56	5		5	ST3GAL1	8	134478044	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	536575	134478044	11885978	816	42900											
ZFAT	57623	broad.mit.edu	37	chr8	135615212	135615212	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatggttacatctggagaCcttgaatgttcctcatgaac	9	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135615212	G	G	135615212	1	3	26	0	1	0	0	0	0	0	0	0	17758	522	18	4		4	ZFAT	8	135615212	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1137168	135615212	10748810	817	42901											
TRAPPC9	83696	broad.mit.edu	37	chr8	141294174	141294174	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggctttgggtctcacgCccacggctgaagcagtgcga	14	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141294174	T	T	141294174	1	4	26	0	1	0	0	0	0	0	0	0	16589	754	26	4		4	TRAPPC9	8	141294174	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	5678962	141294174	5069848	818	42902											
GPAA1	8733	broad.mit.edu	37	chr8	145138042	145138042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcgtgctgagctacgtGgcgggcatcgcctggttctt	14	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145138042	T	T	145138042	2	4	26	1	0	0	0	0	0	0	0	1	6652	1335	47	2		2	GPAA1	8	145138042	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	3843868	145138042	1225980	819	42903											
SMARCA2	6595	broad.mit.edu	37	chr9	2116106	2116106	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggccttttgtctctgaagGactcagaataatccctttgt	9	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2116106	A	A	2116106	1	1	26	0	1	0	0	0	0	0	0	0	14883	1189	41	4		4	SMARCA2	9	2116106	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08		2116106	139097325	820	42904											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5522722	5522722	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagaggacgtatgatttcTgggctattccaagcaccaca	10	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5522722	C	C	5522722	1	2	26	0	1	0	0	0	0	0	0	0	11712	1595	55	5		5	PDCD1LG2	9	5522722	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	3406616	5522722	135690709	821	42905											
KDM4C	23081	broad.mit.edu	37	chr9	6734942	6734942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgtgcaacttttcagaGggatctatatgtctgtctaa	10	7	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6734942	T	T	6734942	1	4	26	0	1	0	0	0	0	0	0	0	8200	1015	35	2		2	KDM4C	9	6734942	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1212220	6734942	134478489	822	42906											
PTPRD	5789	broad.mit.edu	37	chr9	8485784	8485784	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatccacaggcagtgtcctGaactggacactgggactata	11	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8485784	A	A	8485784	2	1	26	1	0	0	0	0	0	0	0	1	12907	1281	45	4		4	PTPRD	9	8485784	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1750842	8485784	132727647	823	42907											
BNC2	54796	broad.mit.edu	37	chr9	16435569	16435569	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgacctgtctcggcttcggcGagaggggaatgcagcattgc	15	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16435569	A	A	16435569	3	1	26	1	0	0	0	0	1	0	0	0	1481	1058	37	4	684	4	BNC2	9	16435569	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	7949785	16435569	124777862	824	42908											
BNC2	54796	broad.mit.edu	37	chr9	16552765	16552765	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgagcttatccaaggcTgtggtggtcccgccaaagtt	13	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16552765	A	A	16552765	5	1	26	1	0	0	0	0	0	0	1	0	1481	1594	55	5	2879	5	BNC2	9	16552765	Splice_Site	SNP	T	TCGA-05-4432-01A-01D-1265-08	117196	16552765	124660666	825	42909											
CNTFR	1271	broad.mit.edu	37	chr9	34564690	34564690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagttccaggccatggaGcaccagctgagagccgttga	13	13	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34564690	T	T	34564690	3	4	26	1	0	0	0	0	1	0	0	0	3670	971	34	3	920	3	CNTFR	9	34564690	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	18011925	34564690	106648741	826	42910											
ARID3C	138715	broad.mit.edu	37	chr9	34623453	34623454	+	Nonsense_Mutation	DNP	GC	TT	TT													gggcttggactcagctgagcGcatgcatgcgctggcaggcc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	34623454	TT	TT	34623453	4	4	26	1	0	0	0	0	0	1	0	0	920	1079	38	3	419	3	ARID3C	9	34623453	Nonsense_Mutation	DNP	GC	TCGA-05-4432-01A-01D-1265-08	58763	34623453	106589978	827	42911											
ZCCHC7	84186	broad.mit.edu	37	chr9	37304322	37304322	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccacgagtacgtgaaatAtgctttgcttctttccacat	6	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37304322	G	G	37304322	1	3	26	0	1	0	0	0	0	0	0	0	17719	464	16	5		5	ZCCHC7	9	37304322	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2680869	37304322	103909109	828	42912											
ZNF658	26149	broad.mit.edu	37	chr9	40773112	40773112	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgaattatgggcaaatgtTttctcacattcattacattc	6	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40773112	C	C	40773112	2	2	26	1	0	0	0	0	0	0	0	1	18196	1838	64	5		5	ZNF658	9	40773112	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	3468790	40773112	100440319	829	42913											
FAM75A6	389730	broad.mit.edu	37	chr9	43627756	43627756	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggctaccagcttccatctGacaggtctctggtgggtggc	13	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43627756	T	T	43627756	3	4	26	1	0	0	0	0	1	0	0	0	5674	1299	45	3	3104	3	FAM75A6	9	43627756	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2854644	43627756	97585675	830	42914											
PGM5	5239	broad.mit.edu	37	chr9	71006565	71006565	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcaccctgacccaaacctGacatatgcaacgactcttct	5	16	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71006565	C	C	71006565	2	2	26	1	0	0	0	0	0	0	0	1	11896	1277	45	4		4	PGM5	9	71006565	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	27378809	71006565	70206866	831	42915											
VPS13A	23230	broad.mit.edu	37	chr9	79918001	79918001	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactttttttggatacttatCaatttttgttttgcttgttg	6	4	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79918001	T	T	79918001	1	4	26	0	1	0	0	0	0	0	0	0	17316	841	29	4		4	VPS13A	9	79918001	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	8911436	79918001	61295430	832	42916											
SPTLC1	10558	broad.mit.edu	37	chr9	94800347	94800347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgcctgttaccatggcCagaagctaggaaggacctgg	13	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94800347	A	A	94800347	1	1	26	0	1	0	0	0	0	0	0	0	15241	609	21	2		2	SPTLC1	9	94800347	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	14882346	94800347	46413084	833	42917											
NOL8	55035	broad.mit.edu	37	chr9	95080959	95080959	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactcttccaaatttgctcaCaacccaattctaaaagaaaa	3	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95080959	G	G	95080959	3	3	26	1	0	0	0	0	1	0	0	0	10622	478	17	4	3124	4	NOL8	9	95080959	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	280612	95080959	46132472	834	42918											
GABBR2	9568	broad.mit.edu	37	chr9	101147818	101147818	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggttgttccctgcctgttCatgtattttcatgtatttct	8	8	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101147818	A	A	101147818	1	1	26	0	1	0	0	0	0	0	0	0	6216	841	29	3		3	GABBR2	9	101147818	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	6066859	101147818	40065613	835	42919											
NR4A3	8013	broad.mit.edu	37	chr9	102595811	102595811	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctactagtaataagagttgaTtgaatgattttgtgtctggc	10	4	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102595811	A	A	102595811	1	1	26	0	1	0	0	0	0	0	0	0	10729	1490	52	5		5	NR4A3	9	102595811	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1447993	102595811	38617620	836	42920											
EPB41L4B	54566	broad.mit.edu	37	chr9	111938997	111938997	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagaagaaacaggaaagAggagatcaatctcaatttgg	12	5	2	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111938997	G	G	111938997	1	3	26	0	1	0	0	0	0	0	0	0	5198	319	11	5		5	EPB41L4B	9	111938997	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	9343186	111938997	29274434	837	42921											
SVEP1	79987	broad.mit.edu	37	chr9	113151817	113151817	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactcacctttgcatattgcCacccctccactccactgtct	3	18	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113151817	T	T	113151817	2	4	26	1	0	0	0	0	0	0	0	1	15538	581	21	4		4	SVEP1	9	113151817	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1212820	113151817	28061614	838	42922											
COL27A1	85301	broad.mit.edu	37	chr9	116956756	116956756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaggtttccagggacccCagttctcagggaagagggga	16	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116956756	A	A	116956756	1	1	26	0	1	0	0	0	0	0	0	0	3717	609	21	2		2	COL27A1	9	116956756	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3804939	116956756	24256675	839	42923											
ASTN2	23245	broad.mit.edu	37	chr9	119249597	119249597	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcttaggcttaaaatcatCctgtctgcctcatgatcccc	5	15	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119249597	T	T	119249597	1	4	26	0	1	0	0	0	0	0	0	0	1069	870	30	4		4	ASTN2	9	119249597	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2292841	119249597	21963834	840	42924											
DAB2IP	153090	broad.mit.edu	37	chr9	124544669	124544669	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgagtgccctgacccaGctgaaagagaggtacagcat	11	11	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124544669	A	A	124544669	2	1	26	1	0	0	0	0	0	0	0	1	4252	962	34	4		4	DAB2IP	9	124544669	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	5295072	124544669	16668762	841	42925											
HSPA5	3309	broad.mit.edu	37	chr9	128000853	128000853	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaatcactaagaaagatgcTgcgatgatgacctacctgta	9	8	1	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128000853	A	A	128000853	1	1	26	0	1	0	0	0	0	0	0	0	7483	1595	55	5		5	HSPA5	9	128000853	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	3456184	128000853	13212578	842	42926											
LRRC8A	56262	broad.mit.edu	37	chr9	131669876	131669876	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagcaacttctggttcAaattcccgcgcaccagctcg	8	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131669876	T	T	131669876	4	4	26	1	0	0	0	0	0	1	0	0	9108	131	5	5	435	5	LRRC8A	9	131669876	Nonsense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3669023	131669876	9543555	843	42927											
GPR107	57720	broad.mit.edu	37	chr9	132889904	132889904	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggataaagtcttgaaGtgtaacttaacagttgttac	9	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132889904	C	C	132889904	1	2	26	0	1	0	0	0	0	0	0	0	6688	1044	36	4		4	GPR107	9	132889904	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1220028	132889904	8323527	844	42928											
LAMC3	10319	broad.mit.edu	37	chr9	133932537	133932537	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgtgaccccaacacaggtGagtctcctggcaccccatcc	8	18	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133932537	T	T	133932537	1	4	26	0	1	0	0	0	0	0	0	0	8688	1305	45	3		3	LAMC3	9	133932537	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1042633	133932537	7280894	845	42929											
LCN9	392399	broad.mit.edu	37	chr9	138555139	138555139	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagggtataaagggggtgGgccgagggctgaggcgtcca	20	7	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138555139	C	C	138555139	1	2	26	0	1	0	0	0	0	0	0	0	8759	1247	43	4		4	LCN9	9	138555139	5'Flank	SNP	G	TCGA-05-4432-01A-01D-1265-08	4622602	138555139	2658292	846	42930											
LCN9	392399	broad.mit.edu	37	chr9	138556212	138556212	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccccaacgcatactctcActcttgcacacacacgctcg	4	20	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138556212	T	T	138556212	1	4	26	0	1	0	0	0	0	0	0	0	8759	174	6	5		5	LCN9	9	138556212	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1073	138556212	2657219	847	42931											
CAMSAP1	157922	broad.mit.edu	37	chr9	138715101	138715101	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaaggtgttggctgggacGcaggcctgaaacacagggaa	15	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138715101	A	A	138715101	3	1	26	1	0	0	0	0	1	0	0	0	2637	1087	38	4	3430	4	CAMSAP1	9	138715101	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	158889	138715101	2498330	848	42932											
SNAPC4	6621	broad.mit.edu	37	chr9	139276235	139276235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtactcttcatcctcaccCctcgcccccaggatgctccc	5	20	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139276235	A	A	139276235	1	1	26	0	1	0	0	0	0	0	0	0	14951	638	22	2		2	SNAPC4	9	139276235	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	561134	139276235	1937196	849	42933											
MAMDC4	158056	broad.mit.edu	37	chr9	139749013	139749013	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccacatagccaccgacttTgagacaggcctgggcccatg	11	15	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139749013	A	A	139749013	3	1	26	1	0	0	0	0	1	0	0	0	9296	1809	63	5	849	5	MAMDC4	9	139749013	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	472778	139749013	1464418	850	42934											
AKR1E2	83592	broad.mit.edu	37	chr10	4884565	4884565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttagaaaataacttagactAcatgggatttccctttgtgt	8	6	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4884565	G	G	4884565	1	3	26	0	1	0	0	0	0	0	0	0	474	406	14	5		5	AKR1E2	10	4884565	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08		4884565	130650182	851	42935											
CALML3	810	broad.mit.edu	37	chr10	5566982	5566983	+	Translation_Start_Site	DNP	CG	AT	AT													cccagagctgggacagcagcCgggctgcggcactgggaggg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	5566983	AT	AT	5566982	1	1	26	1	0	0	0	0	0	0	0	0	2613	667	23	1		1	CALML3	10	5566982	Translation_Start_Site	DNP	CG	TCGA-05-4432-01A-01D-1265-08	682417	5566982	129967765	852	42936											
FAM107B	83641	broad.mit.edu	37	chr10	14564107	14564107	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacttacaatatcaaccacGgaaaagtggtctacaaaatt	5	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14564107	A	A	14564107	1	1	26	0	1	0	0	0	0	0	0	0	5436	1131	39	4		4	FAM107B	10	14564107	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	8997125	14564107	120970640	853	42937											
ACBD7	414149	broad.mit.edu	37	chr10	15059390	15059390	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtttcgctctgttgcccAggctgaagtgcaatgtctgc	13	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15059390	T	T	15059390	1	4	26	0	1	0	0	0	0	0	0	0	127	203	7	5		5	ACBD7	10	15059390	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	495283	15059390	120475357	854	42938											
FAM171A1	221061	broad.mit.edu	37	chr10	15296879	15296879	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggctgtggccgggcacCtgcagagattaacctccgag	15	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15296879	A	A	15296879	5	1	26	1	0	0	0	0	0	0	1	0	5535	695	24	2	2274	2	FAM171A1	10	15296879	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	237489	15296879	120237868	855	42939											
FAM188A	80013	broad.mit.edu	37	chr10	15821093	15821093	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcatctgtctgtagcatGggatcttcaaaacccatcac	8	11	6	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15821093	A	A	15821093	2	1	26	1	0	0	0	0	0	0	0	1	5560	1335	47	4		4	FAM188A	10	15821093	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	524214	15821093	119713654	856	42940											
CUBN	8029	broad.mit.edu	37	chr10	16878336	16878337	+	Missense_Mutation	DNP	CC	AA	AA													agaataaaacactggcacagCcgaagcatttctgccacaga					rs147563157		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	16878337	AA	AA	16878336	3	1	26	1	0	0	0	0	1	0	0	0	4084	739	26	3	813	3	CUBN	10	16878336	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	1057243	16878336	118656411	857	42941											
CUBN	8029	broad.mit.edu	37	chr10	17168735	17168735	+	Intron	SNP	G	A	A													atgttttctgtgaaagatttGggtatgtagtagcatgagac							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17168735	A	A	17168735	1	1	26	0	1	0	0	0	0	0	0	0	4084	1363	47	4		4	CUBN	10	17168735	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	290399	17168735	118366012	858	42942	222	2									
CUBN	8029	broad.mit.edu	37	chr10	17168738	17168738	+	Intron	SNP	T	G	G													ttttctgtgaaagatttgggTatgtagtagcatgagaccta							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17168738	G	G	17168738	1	3	26	0	1	0	0	0	0	0	0	0	4084	1653	57	5		5	CUBN	10	17168738	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	3	17168738	118366009	859	42943	222	2									
VIM	7431	broad.mit.edu	37	chr10	17275676	17275676	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctttttgaagaaactccacGaagaggttagtggagtgact	11	7	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17275676	A	A	17275676	3	1	26	1	0	0	0	0	1	0	0	0	17293	1059	37	4	725	4	VIM	10	17275676	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	106938	17275676	118259071	860	42944											
ARMC3	219681	broad.mit.edu	37	chr10	23235133	23235134	+	Missense_Mutation	DNP	CC	GA	GA													tggtgttaatgcttaattctCcagaagaggaaattttggct							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	23235134	GA	GA	23235133	3	3	26	1	0	0	0	0	1	0	0	0	956	855	30	4	115	4	ARMC3	10	23235133	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	5959457	23235133	112299614	861	42945											
GPR158	57512	broad.mit.edu	37	chr10	25887875	25887875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggagaacggaggtcagcCtcgtgcagccaatgtgtgtg	16	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887875	A	A	25887875	3	1	26	1	0	0	0	0	1	0	0	0	6728	681	24	2	3362	2	GPR158	10	25887875	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2652742	25887875	109646872	862	42946											
MYO3A	53904	broad.mit.edu	37	chr10	26463295	26463295	+	Frame_Shift_Del	DEL	A	-	-													agagaaggcagcagttgaggAaggacaagatgtcttctttt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26463295	-	-	26463295	7	5	26	1	0	1	0	1	0	0	0	0	10170	247	9	0	4212	0	MYO3A	10	26463295	Frame_Shift_Del	DEL	A	TCGA-05-4432-01A-01D-1265-08	575420	26463295	109071452	863	42947											
MPP7	143098	broad.mit.edu	37	chr10	28378646	28378646	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattagtttgtcgccgataCggtgtcacttcttcgtatgt	9	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28378646	A	A	28378646	2	1	26	1	0	0	0	0	0	0	0	1	9833	523	19	3		3	MPP7	10	28378646	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1915351	28378646	107156101	864	42948											
SVIL	6840	broad.mit.edu	37	chr10	29782203	29782203	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatctccacaggacttcttGgcatattataatccacgctg	6	13	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29782203	A	A	29782203	3	1	26	1	0	0	0	0	1	0	0	0	15539	1348	47	4	2757	4	SVIL	10	29782203	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1403557	29782203	105752544	865	42949											
KIAA1462	57608	broad.mit.edu	37	chr10	30317933	30317933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggaggctgaccgctggCcccagccttctcggtcggag	15	13	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30317933	A	A	30317933	3	1	26	1	0	0	0	0	1	0	0	0	8304	739	26	3	2943	3	KIAA1462	10	30317933	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	535730	30317933	105216814	866	42950											
CCDC7	221016	broad.mit.edu	37	chr10	32833293	32833293	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctctgatagtcatatatAgagaaacattattacgtatg	7	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32833293	C	C	32833293	1	2	26	0	1	0	0	0	0	0	0	0	2870	435	15	5		5	CCDC7	10	32833293	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2515360	32833293	102701454	867	42951											
ZNF33A	7581	broad.mit.edu	37	chr10	38343873	38343873	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctccgtcaagggacaatcActatgaatttagtgattgtg	9	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38343873	G	G	38343873	3	3	26	1	0	0	0	0	1	0	0	0	17980	159	6	5	835	5	ZNF33A	10	38343873	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	5510580	38343873	97190874	868	42952											
ZNF37A	7587	broad.mit.edu	37	chr10	38407520	38407520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccttccgtcagaagtcaGccctaattgttcaccagaga	7	12	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38407520	T	T	38407520	3	4	26	1	0	0	0	0	1	0	0	0	17998	971	34	3	1455	3	ZNF37A	10	38407520	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	63647	38407520	97127227	869	42953											
RET	5979	broad.mit.edu	37	chr10	43596063	43596063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctctacggcacgtaccGcacacggctgcatgagaaca	10	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43596063	T	T	43596063	3	4	26	1	0	0	0	0	1	0	0	0	13343	1087	38	3	236	3	RET	10	43596063	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	5188543	43596063	91938684	870	42954											
RET	5979	broad.mit.edu	37	chr10	43617488	43617488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgggtgttgctctcttGgggtggaggttacagaaaca	16	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43617488	T	T	43617488	1	4	26	0	1	0	0	0	0	0	0	0	13343	1363	47	2		2	RET	10	43617488	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	21425	43617488	91917259	871	42955											
CHAT	1103	broad.mit.edu	37	chr10	50863504	50863504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagtcatggtgagtgacGtcgcaccacctcacaacact	8	14	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50863504	T	T	50863504	1	4	26	0	1	0	0	0	0	0	0	0	3344	1160	40	3		3	CHAT	10	50863504	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	7246016	50863504	84671243	872	42956											
PARG	8505	broad.mit.edu	37	chr10	51472519	51472519	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaataattttagaataaagGaatctgtccctcggcagcat	8	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51472519	T	T	51472519	1	4	26	0	1	0	0	0	0	0	0	0	11542	1189	41	3		3	PARG	10	51472519	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	609015	51472519	84062228	873	42957											
PCDH15	65217	broad.mit.edu	37	chr10	55582700	55582700	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttgccactgctgcagatCtatgatctctggtctatttg	9	11	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55582700	A	A	55582700	3	1	26	1	0	0	0	0	1	0	0	0	11605	913	32	3	2691	3	PCDH15	10	55582700	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4110181	55582700	79952047	874	42958											
PCDH15	65217	broad.mit.edu	37	chr10	56077052	56077052	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagttctcaactcaggtatGgcagcttgataagtgagtgg	14	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56077052	A	A	56077052	2	1	26	1	0	0	0	0	0	0	0	1	11605	1335	47	4		4	PCDH15	10	56077052	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	494352	56077052	79457695	875	42959											
PCDH15	65217	broad.mit.edu	37	chr10	56106072	56106072	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taactatcagctgaaaaaatCattaattttattccttttaa	2	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56106072	A	A	56106072	1	1	26	0	1	0	0	0	0	0	0	0	11605	841	29	3		3	PCDH15	10	56106072	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	29020	56106072	79428675	876	42960											
ZWINT	11130	broad.mit.edu	37	chr10	58117948	58117948	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagggaagtcagaggccTggggaagaagacaggggtta	20	4	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58117948	A	A	58117948	1	1	26	0	1	0	0	0	0	0	0	0	18378	1594	55	5		5	ZWINT	10	58117948	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2011876	58117948	77416799	877	42961											
FAM13C	220965	broad.mit.edu	37	chr10	61011385	61011385	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattctcttaaggctttccgCagtctcttcttgtcagccct	6	13	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61011385	T	T	61011385	2	4	26	1	0	0	0	0	0	0	0	1	5500	697	25	4		4	FAM13C	10	61011385	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2893437	61011385	74523362	878	42962											
ANK3	288	broad.mit.edu	37	chr10	62038579	62038579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgtaaccaagacttttaCcacctctgcttgcccagcca	5	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62038579	A	A	62038579	3	1	26	1	0	0	0	0	1	0	0	0	622	507	18	3	13259	3	ANK3	10	62038579	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1027194	62038579	73496168	879	42963											
RHOBTB1	9886	broad.mit.edu	37	chr10	62634766	62634766	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgcccacgccactcgtGgcggctttggtcaactcctg	10	15	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62634766	A	A	62634766	2	1	26	1	0	0	0	0	0	0	0	1	13442	1335	47	4		4	RHOBTB1	10	62634766	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	596187	62634766	72899981	880	42964											
ARID5B	84159	broad.mit.edu	37	chr10	63661776	63661776	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcagaaaatttgtgggtgCtattatttttccacccagcg	9	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63661776	T	T	63661776	1	4	26	0	1	0	0	0	0	0	0	0	924	812	28	4		4	ARID5B	10	63661776	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1027010	63661776	71872971	881	42965											
CTNNA3	29119	broad.mit.edu	37	chr10	68526032	68526032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcttacctctacaagcCtgctggtgtgttcatgaaat	9	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68526032	A	A	68526032	3	1	26	1	0	0	0	0	1	0	0	0	4048	681	24	2	1456	2	CTNNA3	10	68526032	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4864256	68526032	67008715	882	42966											
ADAMTS14	140766	broad.mit.edu	37	chr10	72517685	72517685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacctaccctgaccccggCcgctatgcctggcactgacc	8	20	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72517685	T	T	72517685	1	4	26	0	1	0	0	0	0	0	0	0	259	754	26	4		4	ADAMTS14	10	72517685	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3991653	72517685	63017062	883	42967											
C10orf27	219793	broad.mit.edu	37	chr10	72539460	72539460	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgactcaggcaagggggctgGaaaatccctgacgacacaga	13	10	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72539460	A	A	72539460	3	1	26	1	0	0	0	0	1	0	0	0	1611	1174	41	4	767	4	C10orf27	10	72539460	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	21775	72539460	62995287	884	42968											
CDH23	64072	broad.mit.edu	37	chr10	73269950	73269950	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggagcctgacactggcgTggtgtggctccggcagccac	16	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73269950	A	A	73269950	3	1	26	1	0	0	0	0	1	0	0	0	3138	1696	59	5	267	5	CDH23	10	73269950	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	730490	73269950	62264797	885	42969											
DLG5	9231	broad.mit.edu	37	chr10	79571774	79571774	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcccgatgatgagccgCgcctgctgctccgtggcgct	14	15	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79571774	T	T	79571774	2	4	26	1	0	0	0	0	0	0	0	1	4598	755	27	4		4	DLG5	10	79571774	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	6301824	79571774	55962973	886	42970											
NRG3	10718	broad.mit.edu	37	chr10	84745279	84745279	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacacagcctttctcccccTgagtcccacagccaaatcag	5	17	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84745279	C	C	84745279	3	2	26	1	0	0	0	0	1	0	0	0	10744	1580	55	5	2287	5	NRG3	10	84745279	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	5173505	84745279	50789468	887	42971											
GRID1	2894	broad.mit.edu	37	chr10	87407311	87407312	+	Intron	DNP	CC	AA	AA													caaagttcaagtccttcagcCcagagtgggacttgcagcgc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	87407312	AA	AA	87407311	1	1	26	0	1	0	0	0	0	0	0	0	6837	638	22	2		2	GRID1	10	87407311	Intron	DNP	CC	TCGA-05-4432-01A-01D-1265-08	2662032	87407311	48127436	888	42972											
GRID1	2894	broad.mit.edu	37	chr10	87898572	87898572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctcaggcccccatgacCtacctcgttgatgaaggagt	11	13	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87898572	A	A	87898572	1	1	26	0	1	0	0	0	0	0	0	0	6837	696	24	2		2	GRID1	10	87898572	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	491261	87898572	47636175	889	42973											
PANK1	53354	broad.mit.edu	37	chr10	91371758	91371758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttcggctcgaaatacaCcaatttaaccagcgttccac	5	14	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91371758	A	A	91371758	3	1	26	1	0	0	0	0	1	0	0	0	11510	507	18	3	1069	3	PANK1	10	91371758	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	3473186	91371758	44162989	890	42974											
TNKS2	80351	broad.mit.edu	37	chr10	93609354	93609354	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atatttgagagagaacaggtGagtagataaatcatattgtt	10	2	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93609354	T	T	93609354	1	4	26	0	1	0	0	0	0	0	0	0	16444	1305	45	3		3	TNKS2	10	93609354	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2237596	93609354	41925393	891	42975											
CYP2C9	1559	broad.mit.edu	37	chr10	96748684	96748684	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattttacagaactttaacCtgaaatctctggttgaccca	5	11	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96748684	T	T	96748684	2	4	26	1	0	0	0	0	0	0	0	1	4201	680	24	4		4	CYP2C9	10	96748684	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	3139330	96748684	38786063	892	42976											
PI4K2A	55361	broad.mit.edu	37	chr10	99376649	99376649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgatgctaaggagcaaGccgattctaccagtcacata	8	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99376649	A	A	99376649	1	1	26	0	1	0	0	0	0	0	0	0	11966	986	34	4		4	PI4K2A	10	99376649	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2627965	99376649	36158098	893	42977											
PAX2	5076	broad.mit.edu	37	chr10	102584322	102584322	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcctctccaagagttTcctctccgtgcagtaccctg	6	16	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102584322	G	G	102584322	1	3	26	0	1	0	0	0	0	0	0	0	11573	1798	62	5		5	PAX2	10	102584322	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	3207673	102584322	32950425	894	42978											
OBFC1	79991	broad.mit.edu	37	chr10	105659884	105659884	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atactgcctctgactcggatCgtgtccccgatctctatctt	7	14	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105659884	T	T	105659884	2	4	26	1	0	0	0	0	0	0	0	1	10902	871	31	4		4	OBFC1	10	105659884	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	3075562	105659884	29874863	895	42979											
SLK	9748	broad.mit.edu	37	chr10	105763286	105763286	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggatcgatatctttacaaGtaagtgtacatgagtcattg	10	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105763286	A	A	105763286	5	1	26	1	0	0	0	0	0	0	1	0	14862	1043	36	4	2384	4	SLK	10	105763286	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	103402	105763286	29771461	896	42980											
CCDC147	159686	broad.mit.edu	37	chr10	106214163	106214163	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttaaggaagctaactttCacctcctctcttacagaaac	5	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106214163	A	A	106214163	1	1	26	0	1	0	0	0	0	0	0	0	2807	841	29	3		3	CCDC147	10	106214163	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	450877	106214163	29320584	897	42981											
SORCS3	22986	broad.mit.edu	37	chr10	106675709	106675709	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaagagactgggtcagtAggtcctgagcactcctgctg	14	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106675709	G	G	106675709	1	3	26	0	1	0	0	0	0	0	0	0	15046	435	15	5		5	SORCS3	10	106675709	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	461546	106675709	28859038	898	42982											
SORCS3	22986	broad.mit.edu	37	chr10	106937982	106937982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccagagacactggttctActttcattgaggccttggat	10	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106937982	G	G	106937982	1	3	26	0	1	0	0	0	0	0	0	0	15046	406	14	5		5	SORCS3	10	106937982	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	262273	106937982	28596765	899	42983											
SORCS3	22986	broad.mit.edu	37	chr10	106959752	106959752	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccactcctcccctaaacaCttagagtttttggccacttc	4	16	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106959752	T	T	106959752	1	4	26	0	1	0	0	0	0	0	0	0	15046	580	20	4		4	SORCS3	10	106959752	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	21770	106959752	28574995	900	42984											
SORCS3	22986	broad.mit.edu	37	chr10	106983113	106983113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatgcaggcaataagagGtacttaataaacctatgagc	10	6	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106983113	T	T	106983113	1	4	26	0	1	0	0	0	0	0	0	0	15046	1276	44	3		3	SORCS3	10	106983113	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	23361	106983113	28551634	901	42985											
SORCS3	22986	broad.mit.edu	37	chr10	107022077	107022077	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttaacctgattttgctccTgtcccatgtaggaaaatccc	6	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107022077	A	A	107022077	1	1	26	0	1	0	0	0	0	0	0	0	15046	1595	55	5		5	SORCS3	10	107022077	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	38964	107022077	28512670	902	42986											
TDRD1	56165	broad.mit.edu	37	chr10	115971459	115971459	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctattaatattacattttAggagttgaaggcttctgata	8	4	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115971459	T	T	115971459	1	4	26	0	1	0	0	0	0	0	0	0	15852	435	15	5		5	TDRD1	10	115971459	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	8949382	115971459	19563288	903	42987											
TDRD1	56165	broad.mit.edu	37	chr10	115977387	115977387	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtttcaaggcagagataGgacaaccttgttgtgctttt	11	6	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115977387	A	A	115977387	3	1	26	1	0	0	0	0	1	0	0	0	15852	1001	35	4	2358	4	TDRD1	10	115977387	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	5928	115977387	19557360	904	42988											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118215342	118215342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccttggaagaataactGgtaagcatgccctgcagttg	12	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118215342	T	T	118215342	3	4	26	1	0	0	0	0	1	0	0	0	12247	1362	47	2	583	2	PNLIPRP3	10	118215342	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2237955	118215342	17319405	905	42989											
PNLIP	5406	broad.mit.edu	37	chr10	118305772	118305772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttcaaggagtaaagcaCaggagacgcataagagcaca	10	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118305772	A	A	118305772	1	1	26	0	1	0	0	0	0	0	0	0	12244	493	17	3		3	PNLIP	10	118305772	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	90430	118305772	17228975	906	42990											
PNLIP	5406	broad.mit.edu	37	chr10	118314780	118314780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgtggatgtaattcacaCggatggtgcccccatagtcc	10	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118314780	A	A	118314780	3	1	26	1	0	0	0	0	1	0	0	0	12244	536	19	3	684	3	PNLIP	10	118314780	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	9008	118314780	17219967	907	42991											
PNLIP	5406	broad.mit.edu	37	chr10	118318690	118318690	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtttcccttgtccaagtGgaggctgcccacagatgggt	13	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118318690	A	A	118318690	3	1	26	1	0	0	0	0	1	0	0	0	12244	1349	47	4	989	4	PNLIP	10	118318690	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3910	118318690	17216057	908	42992											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118350659	118350659	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagatgctgatcttctggacAatcacacttttcctgctggg	9	10	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118350659	T	T	118350659	2	4	26	1	0	0	0	0	0	0	0	1	12245	117	5	5		5	PNLIPRP1	10	118350659	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	31969	118350659	17184088	909	42993											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118355700	118355700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccacagcaaaaaatgtcCtgaaaatacaatcttccctc	3	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118355700	A	A	118355700	1	1	26	0	1	0	0	0	0	0	0	0	12245	696	24	2		2	PNLIPRP1	10	118355700	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	5041	118355700	17179047	910	42994											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118383456	118383456	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtttgtggctcaccctaGgaaaagagtctgctacggac	11	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118383456	T	T	118383456	5	4	26	1	0	0	0	0	0	0	1	0	12246	1014	35	2	62	2	PNLIPRP2	10	118383456	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	27756	118383456	17151291	911	42995											
C10orf82	143379	broad.mit.edu	37	chr10	118423607	118423607	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcagggagctggcccagCtaagcagaaaggccactgca	14	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118423607	A	A	118423607	1	1	26	0	1	0	0	0	0	0	0	0	1631	812	28	3		3	C10orf82	10	118423607	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	40151	118423607	17111140	912	42996											
KIAA1598	57698	broad.mit.edu	37	chr10	118699931	118699931	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttaaatatatgtgtgtatgCatgtatgtgtgtgtgtacct	10	4	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118699931	G	G	118699931	1	3	26	0	1	0	0	0	0	0	0	0	8316	725	25	4		4	KIAA1598	10	118699931	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	276324	118699931	16834816	913	42997											
SLC18A2	6571	broad.mit.edu	37	chr10	119027241	119027241	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaactttggagttggttttGcaattggtaagtcacacgaa	11	6	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119027241	C	C	119027241	3	2	26	1	0	0	0	0	1	0	0	0	14539	1319	46	4	1226	4	SLC18A2	10	119027241	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	327310	119027241	16507506	914	42998											
INPP5F	22876	broad.mit.edu	37	chr10	121571426	121571426	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttactactgcctgatgatgaGaagttccatgggggctgggc	14	8	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121571426	T	T	121571426	3	4	26	1	0	0	0	0	1	0	0	0	7828	933	33	3	1903	3	INPP5F	10	121571426	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2544185	121571426	13963321	915	42999											
WDR11	55717	broad.mit.edu	37	chr10	122633524	122633524	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacattgagtactctgtaatAtctgcagtggtgattatttg	9	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122633524	C	C	122633524	1	2	26	0	1	0	0	0	0	0	0	0	17400	464	16	5		5	WDR11	10	122633524	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1062098	122633524	12901223	916	43000											
NPS	594857	broad.mit.edu	37	chr10	129350781	129350781	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acagctgcccaaccagattgGacaggagcaaagaactagct	10	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129350781	C	C	129350781	3	2	26	1	0	0	0	0	1	0	0	0	10694	1174	41	4	158	4	NPS	10	129350781	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	6717257	129350781	6183966	917	43001											
FOXI2	399823	broad.mit.edu	37	chr10	129536960	129536960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagcgcggcttgcctggacCtgcaggcctcgccctctcca	12	18	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129536960	A	A	129536960	3	1	26	1	0	0	0	0	1	0	0	0	6070	680	24	2	694	2	FOXI2	10	129536960	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	186179	129536960	5997787	918	43002											
B4GALNT4	338707	broad.mit.edu	37	chr11	373108	373108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggtttcatccacccggCgagggacggtacgggggtga	16	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	373108	A	A	373108	3	1	26	1	0	0	0	0	1	0	0	0	1274	768	27	3	545	3	B4GALNT4	11	373108	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08		373108	134633408	919	43003											
POLR2L	5441	broad.mit.edu	37	chr11	842516	842516	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggatgatcatggcggcgGcgcgtcccagactgcccggc	16	14	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	842516	T	T	842516	1	4	26	0	1	0	0	0	0	0	0	0	12322	1218	42	3		3	POLR2L	11	842516	5'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	469408	842516	134164000	920	43004											
MUC2	4583	broad.mit.edu	37	chr11	1101128	1101128	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggcacctacctcgccacGgaggtcaaccctgccgacac	10	18	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1101128	T	T	1101128	2	4	26	1	0	0	0	0	0	0	0	1	10069	1103	39	1		1	MUC2	11	1101128	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	258612	1101128	133905388	921	43005											
OR51E2	81285	broad.mit.edu	37	chr11	4702914	4702914	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgggcaactggaaataaGctagtgttagaaataattat	9	3	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4702914	T	T	4702914	1	4	26	0	1	0	0	0	0	0	0	0	11189	986	34	3		3	OR51E2	11	4702914	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	3601786	4702914	130303602	922	43006											
OR51F1	256892	broad.mit.edu	37	chr11	4790262	4790262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggatttgttttgtttttaCactgtcgatgatggggttga	13	4	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4790262	A	A	4790262	3	1	26	1	0	0	0	0	1	0	0	0	11190	478	17	3	55	3	OR51F1	11	4790262	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	87348	4790262	130216254	923	43007											
OR51B2	79345	broad.mit.edu	37	chr11	5345488	5345488	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccagccctggaaagcCagtcagcaaaaaaggggctg	12	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5345488	G	G	5345488	3	3	26	1	0	0	0	0	1	0	0	0	11183	594	21	4	902	4	OR51B2	11	5345488	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	555226	5345488	129661028	924	43008											
OR51B5	282763	broad.mit.edu	37	chr11	5509929	5509929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaagagcccttcatttgcCaggaagaatgtcagattcca	9	9	2	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5509929	A	A	5509929	1	1	26	0	1	0	0	0	0	0	0	0	11185	609	21	2		2	OR51B5	11	5509929	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	164441	5509929	129496587	925	43009											
HBG2	3048	broad.mit.edu	37	chr11	5592930	5592930	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcacagttgtggccattcAcagtgtggtatttctgaatg	10	8	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5592930	T	T	5592930	1	4	26	0	1	0	0	0	0	0	0	0	7049	174	6	5		5	HBG2	11	5592930	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	83001	5592930	129413586	926	43010											
HBG2	3048	broad.mit.edu	37	chr11	5602039	5602039	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtcatcgggcctgtaagTatatgcaggccttgtgcata	11	9	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5602039	A	A	5602039	1	1	26	0	1	0	0	0	0	0	0	0	7049	1653	57	5		5	HBG2	11	5602039	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	9109	5602039	129404477	927	43011											
OR52B6	340980	broad.mit.edu	37	chr11	5602329	5602329	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcctctcccaggcaatcCtgcatgagcccatgtacata	6	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5602329	A	A	5602329	3	1	26	1	0	0	0	0	1	0	0	0	11207	680	24	2	225	2	OR52B6	11	5602329	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	290	5602329	129404187	928	43012											
OR56A3	390083	broad.mit.edu	37	chr11	5968750	5968750	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatctggctggaggcctcTctgcaccagcccctgtacta	9	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5968750	A	A	5968750	2	1	26	1	0	0	0	0	0	0	0	1	11228	1538	54	5		5	OR56A3	11	5968750	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	366421	5968750	129037766	929	43013											
CCKBR	887	broad.mit.edu	37	chr11	6291134	6291134	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccgtcatctgcaaggcGgtttcctacctcatgggtgg	13	12	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6291134	T	T	6291134	2	4	26	1	0	0	0	0	0	0	0	1	2909	1103	39	1		1	CCKBR	11	6291134	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	322384	6291134	128715382	930	43014											
HPX	3263	broad.mit.edu	37	chr11	6458851	6458851	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacgctccttcatggttccCgtagccaagtcccagaacca	8	15	1	1	rs145145967		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6458851	A	A	6458851	2	1	26	1	0	0	0	0	0	0	0	1	7413	639	23	1		1	HPX	11	6458851	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	167717	6458851	128547665	931	43015											
OR10A2	341276	broad.mit.edu	37	chr11	6891892	6891892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccctcagaaactgtatcCcatagaccttaggaagtaag	8	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6891892	A	A	6891892	3	1	26	1	0	0	0	0	1	0	0	0	10984	623	22	2	909	2	OR10A2	11	6891892	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	433041	6891892	128114624	932	43016											
NLRP14	338323	broad.mit.edu	37	chr11	7064041	7064041	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtttattattgacagtttcGatgaactgaactttgccttt	7	6	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7064041	A	A	7064041	3	1	26	1	0	0	0	0	1	0	0	0	10571	1058	37	4	794	4	NLRP14	11	7064041	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	172149	7064041	127942475	933	43017											
NLRP14	338323	broad.mit.edu	37	chr11	7079669	7079669	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacatgcacaatgtactcTgaagagccttgtgtaagtgt	10	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7079669	G	G	7079669	3	3	26	1	0	0	0	0	1	0	0	0	10571	1580	55	5	2647	5	NLRP14	11	7079669	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	15628	7079669	127926847	934	43018											
RPL27A	6157	broad.mit.edu	37	chr11	8706809	8706809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgggggttctggtccctGtgtcagtcttaactctcatg	12	10	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8706809	T	T	8706809	1	4	26	0	1	0	0	0	0	0	0	0	13687	1392	48	3		3	RPL27A	11	8706809	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1627140	8706809	126299707	935	43019											
ADM	133	broad.mit.edu	37	chr11	10328198	10328198	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttctttaggatttaggcGcccatggtacaaggaatagt	10	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10328198	T	T	10328198	1	4	26	0	1	0	0	0	0	0	0	0	321	1102	38	3		3	ADM	11	10328198	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	1621389	10328198	124678318	936	43020											
MICAL2	9645	broad.mit.edu	37	chr11	12284015	12284015	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctttccaatcttacgcCatggccatcagttcatttca	4	14	5	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12284015	A	A	12284015	1	1	26	0	1	0	0	0	0	0	0	0	9663	609	21	2		2	MICAL2	11	12284015	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1955817	12284015	122722501	937	43021											
INSC	387755	broad.mit.edu	37	chr11	15247164	15247164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatatgaaaacacttggcaCggaagttattttctttctct	7	7	2	2	rs7949064		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15247164	A	A	15247164	1	1	26	0	1	0	0	0	0	0	0	0	7834	551	19	3		3	INSC	11	15247164	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2963149	15247164	119759352	938	43022											
SOX6	55553	broad.mit.edu	37	chr11	16505860	16505860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccaatggggaaaattccCtcccaggcttaaagccagtt	8	12	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16505860	A	A	16505860	1	1	26	0	1	0	0	0	0	0	0	0	15069	696	24	2		2	SOX6	11	16505860	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1258696	16505860	118500656	939	43023											
NUCB2	4925	broad.mit.edu	37	chr11	17332893	17332893	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaaagtatttgctttcctCttaattgatttctgccaagg	7	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17332893	A	A	17332893	1	1	26	0	1	0	0	0	0	0	0	0	10814	928	32	3		3	NUCB2	11	17332893	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	827033	17332893	117673623	940	43024											
USH1C	10083	broad.mit.edu	37	chr11	17537870	17537870	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gataacaaaatgatgagacaCagttcagctcagccagagca	9	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17537870	G	G	17537870	1	3	26	0	1	0	0	0	0	0	0	0	17160	493	17	4		4	USH1C	11	17537870	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	204977	17537870	117468646	941	43025											
ANO3	63982	broad.mit.edu	37	chr11	26538397	26538397	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctattgcaagccccgatatCatgtttattaaaattcacat	5	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26538397	T	T	26538397	2	4	26	1	0	0	0	0	0	0	0	1	698	816	29	4		4	ANO3	11	26538397	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	9000527	26538397	108468119	942	43026											
KCNA4	3739	broad.mit.edu	37	chr11	30034035	30034035	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccccgcgtgactggtggTggtggtgggagcccccacca	17	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30034035	C	C	30034035	3	2	26	1	0	0	0	0	1	0	0	0	8075	1696	59	5	1774	5	KCNA4	11	30034035	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	3495638	30034035	104972481	943	43027											
WT1	7490	broad.mit.edu	37	chr11	32417710	32417710	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcagtgcttactttccatCctggaaataacctgggtcct	8	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32417710	A	A	32417710	1	1	26	0	1	0	0	0	0	0	0	0	17535	870	30	3		3	WT1	11	32417710	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2383675	32417710	102588806	944	43028											
QSER1	79832	broad.mit.edu	37	chr11	32953814	32953814	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggcacaactgactggttCacagcactccttacatagtt	7	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32953814	T	T	32953814	3	4	26	1	0	0	0	0	1	0	0	0	12990	838	29	4	629	4	QSER1	11	32953814	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	536104	32953814	102052702	945	43029											
SLC1A2	6506	broad.mit.edu	37	chr11	35395945	35395945	+	Intron	DEL	T	-	-													agacctggcctccctagatcTggtcacctgtctggagcaaa							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35395945	-	-	35395945	6	5	26	0	1	1	0	1	0	0	0	0	14545	1595	55	0		0	SLC1A2	11	35395945	Intron	DEL	T	TCGA-05-4432-01A-01D-1265-08	2442131	35395945	99610571	946	43030											
RAG1	5896	broad.mit.edu	37	chr11	36596535	36596535	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccattgcaaagaggttcCgctatgattcagctttggtg	10	9	1	2	rs104894285		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36596535	T	T	36596535	3	4	26	1	0	0	0	0	1	0	0	0	13111	652	23	4	1683	4	RAG1	11	36596535	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1200590	36596535	98409981	947	43031											
RAG1	5896	broad.mit.edu	37	chr11	36596940	36596940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaatgcttgagctgggaGgcattctccggactttcaag	11	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36596940	T	T	36596940	3	4	26	1	0	0	0	0	1	0	0	0	13111	1000	35	2	2088	2	RAG1	11	36596940	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	405	36596940	98409576	948	43032											
API5	8539	broad.mit.edu	37	chr11	43342304	43342304	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaagaaagaaaAgaaaaagctgtttgttattt	6	1	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43342304	G	G	43342304	1	3	26	0	1	0	0	0	0	0	0	0	775	87	3	5		5	API5	11	43342304	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	6745364	43342304	91664212	949	43033											
TTC17	55761	broad.mit.edu	37	chr11	43427092	43427092	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatattctatggcctaaaaGagcagattgtacagaaagct	9	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43427092	T	T	43427092	3	4	26	1	0	0	0	0	1	0	0	0	16810	942	33	3	1554	3	TTC17	11	43427092	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	84788	43427092	91579424	950	43034											
ACCSL	390110	broad.mit.edu	37	chr11	44074297	44074297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagttgattcctgtccaCctggagagtgaggtctgaat	13	7	1	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44074297	A	A	44074297	3	1	26	1	0	0	0	0	1	0	0	0	134	506	18	3	880	3	ACCSL	11	44074297	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	647205	44074297	90932219	951	43035											
ALX4	60529	broad.mit.edu	37	chr11	44296805	44296805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggaaagccatggtgtGgttggtgggcagtcaggaga	19	4	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44296805	T	T	44296805	1	4	26	0	1	0	0	0	0	0	0	0	558	1363	47	2		2	ALX4	11	44296805	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	222508	44296805	90709711	952	43036											
ACP2	53	broad.mit.edu	37	chr11	47266983	47266983	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtctcagtcctgctctggGgaaaagacagcgtggtgagc	16	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47266983	A	A	47266983	1	1	26	0	1	0	0	0	0	0	0	0	163	1247	43	4		4	ACP2	11	47266983	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2970178	47266983	87739533	953	43037											
MADD	8567	broad.mit.edu	37	chr11	47307001	47307001	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcctctgtgcattcaaGggctcaaaagctgctgcggc	13	11	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47307001	T	T	47307001	5	4	26	1	0	0	0	0	0	0	1	0	9240	1014	35	2	2461	2	MADD	11	47307001	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	40018	47307001	87699515	954	43038											
KBTBD4	55709	broad.mit.edu	37	chr11	47597273	47597273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagagccagaggaaaggCatggtcaatgacaatccgaa	13	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47597273	A	A	47597273	1	1	26	0	1	0	0	0	0	0	0	0	8065	725	25	3		3	KBTBD4	11	47597273	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	290272	47597273	87409243	955	43039											
OR4C3	256144	broad.mit.edu	37	chr11	48346719	48346719	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cattgtggtcactatcacctCcagccccacgctggcttccc	7	18	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48346719	G	G	48346719	3	3	26	1	0	0	0	0	1	0	0	0	11144	855	30	4	229	4	OR4C3	11	48346719	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	749446	48346719	86659797	956	43040											
FOLH1	2346	broad.mit.edu	37	chr11	49179695	49179695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaactaagccacaattcagCaaaaacaagggatgctatcc	7	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49179695	A	A	49179695	1	1	26	0	1	0	0	0	0	0	0	0	6037	725	25	3		3	FOLH1	11	49179695	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	832976	49179695	85826821	957	43041											
TRIM48	79097	broad.mit.edu	37	chr11	55034974	55034974	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaacataatttggagaTgctgaaaaagaagggaaaag	11	2	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55034974	A	A	55034974	1	1	26	0	1	0	0	0	0	0	0	0	16648	1479	51	5		5	TRIM48	11	55034974	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	5855279	55034974	79971542	958	43042											
TRIM48	79097	broad.mit.edu	37	chr11	55035914	55035914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatatcaaagcaggctctaCcaaagtcatggcataaacga	8	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55035914	A	A	55035914	1	1	26	0	1	0	0	0	0	0	0	0	16648	522	18	3		3	TRIM48	11	55035914	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	940	55035914	79970602	959	43043											
OR4A16	81327	broad.mit.edu	37	chr11	55111106	55111106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttgcatccttctgttgGtggtggccatgattggaggt	15	6	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55111106	T	T	55111106	3	4	26	1	0	0	0	0	1	0	0	0	11135	1261	44	3	432	3	OR4A16	11	55111106	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	75192	55111106	79895410	960	43044											
OR5D14	219436	broad.mit.edu	37	chr11	55563013	55563013	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggaacaattctcttcaacCcttccattaaaaggaattat	4	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55563013	G	G	55563013	1	3	26	0	1	0	0	0	0	0	0	0	11249	638	22	4		4	OR5D14	11	55563013	5'Flank	SNP	C	TCGA-05-4432-01A-01D-1265-08	451907	55563013	79443503	961	43045											
OR5D14	219436	broad.mit.edu	37	chr11	55563765	55563765	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agccttctccacctgggcctCccacctgacttctatcacca	5	19	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563765	T	T	55563765	3	4	26	1	0	0	0	0	1	0	0	0	11249	855	30	4	736	4	OR5D14	11	55563765	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	752	55563765	79442751	962	43046											
OR5L1	219437	broad.mit.edu	37	chr11	55579236	55579237	+	Missense_Mutation	DNP	GG	AA	AA													atctccttcctagggtgcatGgtgcaattctacttgttttg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55579237	AA	AA	55579236	3	1	26	1	0	0	0	0	1	0	0	0	11264	1348	47	4	296	4	OR5L1	11	55579236	Missense_Mutation	DNP	GG	TCGA-05-4432-01A-01D-1265-08	15471	55579236	79427280	963	43047											
OR5D18	219438	broad.mit.edu	37	chr11	55587852	55587852	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctcccacctgactgccatCaccatcttccatggcaccat	5	19	2	1	rs148575844		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587852	T	T	55587852	2	4	26	1	0	0	0	0	0	0	0	1	11251	816	29	4		4	OR5D18	11	55587852	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	8616	55587852	79418664	964	43048											
SPRYD5	84767	broad.mit.edu	37	chr11	55653024	55653024	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgccggccctgtttgtaCctcaactggcaagacacggc	10	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55653024	G	G	55653024	4	3	26	1	0	0	0	0	0	1	0	0	15229	518	18	4	122	4	SPRYD5	11	55653024	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	65172	55653024	79353492	965	43049											
SPRYD5	84767	broad.mit.edu	37	chr11	55657475	55657475	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccagagctcagtgcaggGcccatcactggactgctgga	12	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55657475	T	T	55657475	2	4	26	1	0	0	0	0	0	0	0	1	15229	1190	42	3		3	SPRYD5	11	55657475	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	4451	55657475	79349041	966	43050											
OR8H3	390152	broad.mit.edu	37	chr11	55890117	55890117	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgaacttactgacttccaActatatttccttcacgggct	6	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55890117	G	G	55890117	3	3	26	1	0	0	0	0	1	0	0	0	11333	43	2	5	271	5	OR8H3	11	55890117	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	232642	55890117	79116399	967	43051											
OR5AR1	219493	broad.mit.edu	37	chr11	56431427	56431427	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgacttcctaacaaatcAcaaagttatctccttctcca	4	13	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56431427	T	T	56431427	3	4	26	1	0	0	0	0	1	0	0	0	11239	159	6	5	268	5	OR5AR1	11	56431427	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	541310	56431427	78575089	968	43052											
OR10Q1	219960	broad.mit.edu	37	chr11	57996204	57996204	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacaccacccagatgatGgctgtgttgccacagaggat	12	11	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57996204	T	T	57996204	2	4	26	1	0	0	0	0	0	0	0	1	11010	1335	47	2		2	OR10Q1	11	57996204	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1564777	57996204	77010312	969	43053											
MS4A6A	64231	broad.mit.edu	37	chr11	59945759	59945759	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggttaaccttttctctgTggcgattgatagagagccag	11	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59945759	A	A	59945759	3	1	26	1	0	0	0	0	1	0	0	0	9958	1696	59	5	476	5	MS4A6A	11	59945759	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1949555	59945759	75060757	970	43054											
TMEM132A	54972	broad.mit.edu	37	chr11	60703933	60703933	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtcttcgtcctgcgctatCagcgcaaagaacctcccgac	9	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60703933	G	G	60703933	3	3	26	1	0	0	0	0	1	0	0	0	16168	827	29	4	2671	4	TMEM132A	11	60703933	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	758174	60703933	74302583	971	43055											
SCGB1D4	404552	broad.mit.edu	37	chr11	62063821	62063821	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttagtgaagatcagggtgtCgttgaaagactttggaaacc	12	5	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62063821	A	A	62063821	1	1	26	0	1	0	0	0	0	0	0	0	14010	899	31	3		3	SCGB1D4	11	62063821	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	1359888	62063821	72942695	972	43056											
GANAB	23193	broad.mit.edu	37	chr11	62399970	62399971	+	Intron	INS	-	TA	TA													caaatagctaatgcccctagINStatacctatttgcctcaagg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	62399971	TA	TA	62399970	6	5	26	0	1	1	1	0	0	0	0	0	6295	1044	36	0		0	GANAB	11	62399970	Intron	INS	-	TCGA-05-4432-01A-01D-1265-08	336149	62399970	72606546	973	43057											
SLC22A8	9376	broad.mit.edu	37	chr11	62782033	62782033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccagcctcctctgctgcCcaccagcggtgcagggtatg	11	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62782033	A	A	62782033	1	1	26	0	1	0	0	0	0	0	0	0	14574	638	22	2		2	SLC22A8	11	62782033	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	382063	62782033	72224483	974	43058											
C11orf84	144097	broad.mit.edu	37	chr11	63586320	63586320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactttcgcagcaccagcCgaggtccgacacttcactga	10	14	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63586320	A	A	63586320	2	1	26	1	0	0	0	0	0	0	0	1	1679	639	23	1		1	C11orf84	11	63586320	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	804287	63586320	71420196	975	43059											
PLCB3	5331	broad.mit.edu	37	chr11	64029380	64029380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggaggtggaggctgatgGggtgggccctggcacctgtg	21	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64029380	T	T	64029380	1	4	26	0	1	0	0	0	0	0	0	0	12124	1247	43	2		2	PLCB3	11	64029380	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	443060	64029380	70977136	976	43060											
SLC22A11	55867	broad.mit.edu	37	chr11	64323733	64323733	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccccaccagtgccgccgcTtccgccagccacagtggcag	12	19	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64323733	A	A	64323733	3	1	26	1	0	0	0	0	1	0	0	0	14555	1609	56	5	264	5	SLC22A11	11	64323733	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	294353	64323733	70682783	977	43061											
DPF2	5977	broad.mit.edu	37	chr11	65111563	65111563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgcctcacaagtgggtgGgtagaccttgccttggaccc	14	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65111563	T	T	65111563	1	4	26	0	1	0	0	0	0	0	0	0	4757	1247	43	2		2	DPF2	11	65111563	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	787830	65111563	69894953	978	43062											
GAL3ST3	89792	broad.mit.edu	37	chr11	65810715	65810715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgcggtagtatgcctcggGcgcgcgcaggaaggcctcga	17	12	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65810715	T	T	65810715	3	4	26	1	0	0	0	0	1	0	0	0	6261	1203	42	3	740	3	GAL3ST3	11	65810715	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	699152	65810715	69195801	979	43063											
SF3B2	10992	broad.mit.edu	37	chr11	65819818	65819818	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggccctgaggctggcccCagcttccgggttggtcgcgc	17	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65819818	A	A	65819818	1	1	26	0	1	0	0	0	0	0	0	0	14264	609	21	2		2	SF3B2	11	65819818	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	9103	65819818	69186698	980	43064											
PACS1	55690	broad.mit.edu	37	chr11	66001223	66001223	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcaggatcctggcacccctGagcactgctatgacgctccc	11	16	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66001223	C	C	66001223	1	2	26	0	1	0	0	0	0	0	0	0	11466	1305	45	4		4	PACS1	11	66001223	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	181405	66001223	69005293	981	43065											
BRMS1	25855	broad.mit.edu	37	chr11	66109713	66109713	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggacaggcatctggactCtgggagaaggaatggagcta	16	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66109713	T	T	66109713	5	4	26	1	0	0	0	0	0	0	1	0	1525	927	32	4		4	BRMS1	11	66109713	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	108490	66109713	68896803	982	43066											
MRPL11	65003	broad.mit.edu	37	chr11	66204347	66204347	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttggatccttcatggagatCtttccatttcttagaacatt	6	9	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66204347	A	A	66204347	1	1	26	0	1	0	0	0	0	0	0	0	9870	912	32	3		3	MRPL11	11	66204347	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	94634	66204347	68802169	983	43067											
RHOD	29984	broad.mit.edu	37	chr11	66837915	66837915	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtacccagaagtgaatcAtttctgcaagaaggtaccca	10	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66837915	G	G	66837915	3	3	26	1	0	0	0	0	1	0	0	0	13446	217	8	5	364	5	RHOD	11	66837915	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	633568	66837915	68168601	984	43068											
GPR152	390212	broad.mit.edu	37	chr11	67219375	67219375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtagaccagggcctccCagagcaggtagccagagtag	15	11	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67219375	A	A	67219375	3	1	26	1	0	0	0	0	1	0	0	0	6723	595	21	2	595	2	GPR152	11	67219375	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	381460	67219375	67787141	985	43069											
SUV420H1	51111	broad.mit.edu	37	chr11	67925826	67925826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacagtctgtgtagctcaCaggcacgcccacagtgccac	10	15	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67925826	A	A	67925826	3	1	26	1	0	0	0	0	1	0	0	0	15532	478	17	3	674	3	SUV420H1	11	67925826	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	706451	67925826	67080690	986	43070											
SUV420H1	51111	broad.mit.edu	37	chr11	67926156	67926156	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttggttcaagcttgatgtCagaggcctccttcagatttg	10	8	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67926156	T	T	67926156	3	4	26	1	0	0	0	0	1	0	0	0	15532	826	29	4	1004	4	SUV420H1	11	67926156	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	330	67926156	67080360	987	43071											
LRP5	4041	broad.mit.edu	37	chr11	68157558	68157558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttgatccaggaggccaGgcccagccaccccctgcagc	11	16	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68157558	T	T	68157558	1	4	26	0	1	0	0	0	0	0	0	0	9047	1015	35	2		2	LRP5	11	68157558	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	231402	68157558	66848958	988	43072											
LRP5	4041	broad.mit.edu	37	chr11	68171004	68171004	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggaggacaagctcccGcacatttttgggttcacgct	10	13	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68171004	A	A	68171004	2	1	26	1	0	0	0	0	0	0	0	1	9047	1074	38	4		4	LRP5	11	68171004	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	13446	68171004	66835512	989	43073											
SAPS3	55291	broad.mit.edu	37	chr11	68312248	68312248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcctttctgatttgtgtttAtctttatgtaattaaactgt	6	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68312248	T	T	68312248	1	4	26	0	1	0	0	0	0	0	0	0	13950	464	16	5		5	SAPS3	11	68312248	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	141244	68312248	66694268	990	43074											
KRTAP5-11	440051	broad.mit.edu	37	chr11	71293440	71293440	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttacactggcagcacacgggGacacagcagctggactggca	13	12	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71293440	A	A	71293440	2	1	26	1	0	0	0	0	0	0	0	1	8632	1161	41	4		4	KRTAP5-11	11	71293440	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	2981192	71293440	63713076	991	43075											
RELT	84957	broad.mit.edu	37	chr11	73101740	73101740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcagagtcctgtgcctGgcccccaagggtcctcaggc	15	14	1	1	rs112213382		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73101740	T	T	73101740	1	4	26	0	1	0	0	0	0	0	0	0	13329	1363	47	2		2	RELT	11	73101740	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1808300	73101740	61904776	992	43076											
RELT	84957	broad.mit.edu	37	chr11	73103419	73103419	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctgcctcatggggctGttgggcatcctggtgtgcaa	14	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73103419	T	T	73103419	2	4	26	1	0	0	0	0	0	0	0	1	13329	1364	48	3		3	RELT	11	73103419	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1679	73103419	61903097	993	43077											
C11orf82	220042	broad.mit.edu	37	chr11	82625869	82625869	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatgtcagaagtgcttctCtaggataatcctggtctcca	8	10	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82625869	G	G	82625869	3	3	26	1	0	0	0	0	1	0	0	0	1677	913	32	4	91	4	C11orf82	11	82625869	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	9522450	82625869	52380647	994	43078											
DLG2	1740	broad.mit.edu	37	chr11	83691446	83691446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattttaagccacccaccCtgtggtattttgtgatggca	9	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83691446	A	A	83691446	1	1	26	0	1	0	0	0	0	0	0	0	4595	696	24	2		2	DLG2	11	83691446	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1065577	83691446	51315070	995	43079											
CCDC83	220047	broad.mit.edu	37	chr11	85568570	85568570	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtacccacagctcttgtcgGggatgtgaggcatcttcaag	12	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85568570	C	C	85568570	1	2	26	0	1	0	0	0	0	0	0	0	2885	1247	43	4		4	CCDC83	11	85568570	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1877124	85568570	49437946	996	43080											
PICALM	8301	broad.mit.edu	37	chr11	85712361	85712361	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgaaatattctacctaGtgatctacaggattaaagca	7	7	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85712361	A	A	85712361	1	1	26	0	1	0	0	0	0	0	0	0	11975	1044	36	4		4	PICALM	11	85712361	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	143791	85712361	49294155	997	43081											
RAB38	23682	broad.mit.edu	37	chr11	87847004	87847004	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcatagaaagaacatttgCtatttctctctcactgaaaa	5	8	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87847004	A	A	87847004	1	1	26	0	1	0	0	0	0	0	0	0	13036	812	28	3		3	RAB38	11	87847004	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	2134643	87847004	47159512	998	43082											
NOX4	50507	broad.mit.edu	37	chr11	89173819	89173819	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctacttttaaagatgttCctaaacctaaagaaaaggct	6	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89173819	A	A	89173819	1	1	26	0	1	0	0	0	0	0	0	0	10653	870	30	3		3	NOX4	11	89173819	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1326815	89173819	45832697	999	43083											
GRIA4	2893	broad.mit.edu	37	chr11	105623602	105623602	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatactcctgacagatccAatgattcagtgatttttatt	5	8	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105623602	G	G	105623602	1	3	26	0	1	0	0	0	0	0	0	0	6836	145	5	5		5	GRIA4	11	105623602	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	16449783	105623602	29382914	1000	43084											
GRIA4	2893	broad.mit.edu	37	chr11	105781249	105781249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctattgagaacagaaCagtggttgtaaccacaatta	9	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105781249	A	A	105781249	3	1	26	1	0	0	0	0	1	0	0	0	6836	478	17	3	1281	3	GRIA4	11	105781249	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	157647	105781249	29225267	1001	43085											
NPAT	4863	broad.mit.edu	37	chr11	108044602	108044602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtatcaggcaggtagaCagatatggtaaatatgttca	10	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108044602	A	A	108044602	1	1	26	0	1	0	0	0	0	0	0	0	10661	493	17	3		3	NPAT	11	108044602	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2263353	108044602	26961914	1002	43086											
KDELC2	143888	broad.mit.edu	37	chr11	108352829	108352829	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttggaaggacaacatctcTtgaatccagagagccacacc	9	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108352829	C	C	108352829	3	2	26	1	0	0	0	0	1	0	0	0	8188	1617	56	5	738	5	KDELC2	11	108352829	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	308227	108352829	26653687	1003	43087											
ZC3H12C	85463	broad.mit.edu	37	chr11	110023681	110023681	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattttcctgcagaggaataAaattggcagtggattggttt	11	4	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110023681	T	T	110023681	4	4	26	1	0	0	0	0	0	1	0	0	17689	15	1	5	821	5	ZC3H12C	11	110023681	Nonsense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1670852	110023681	24982835	1004	43088											
RDX	5962	broad.mit.edu	37	chr11	110106875	110106875	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttcttcttggcttcctcTagaagtgcaatcttggcagt	8	9	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110106875	A	A	110106875	2	1	26	1	0	0	0	0	0	0	0	1	13306	1509	53	5		5	RDX	11	110106875	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	83194	110106875	24899641	1005	43089											
DLAT	1737	broad.mit.edu	37	chr11	111914147	111914148	+	Intron	INS	-	A	A													gttgatctccttggggaaccINSaatggtatgtcatcatgtat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111914148	A	A	111914147	6	5	26	0	1	1	1	0	0	0	0	0	4589	609	21	0		0	DLAT	11	111914147	Intron	INS	-	TCGA-05-4432-01A-01D-1265-08	1807272	111914147	23092369	1006	43090											
TTC12	54970	broad.mit.edu	37	chr11	113233282	113233282	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaagtctcctattttattCggggaacagaattaaggtgg	11	6	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113233282	T	T	113233282	1	4	26	0	1	0	0	0	0	0	0	0	16805	899	31	4		4	TTC12	11	113233282	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1319135	113233282	21773234	1007	43091											
FAM55A	120400	broad.mit.edu	37	chr11	114401032	114401032	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggtctctgtcatccagaTattcacagagttcagcattt	7	10	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114401032	C	C	114401032	3	2	26	1	0	0	0	0	1	0	0	0	5635	1406	49	5	961	5	FAM55A	11	114401032	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1167750	114401032	20605484	1008	43092											
IL10RA	3587	broad.mit.edu	37	chr11	117860272	117860272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaccgggccagagtgcggGctgtggacggcagccggcac	18	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117860272	T	T	117860272	3	4	26	1	0	0	0	0	1	0	0	0	7690	1203	42	3	314	3	IL10RA	11	117860272	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3459240	117860272	17146244	1009	43093											
HMBS	3145	broad.mit.edu	37	chr11	118963795	118963795	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatctcttgttctcaccaAatcccacctccttccctcat	1	17	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118963795	C	C	118963795	1	2	26	0	1	0	0	0	0	0	0	0	7286	29	1	5		5	HMBS	11	118963795	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1103523	118963795	16042721	1010	43094											
MFRP	83552	broad.mit.edu	37	chr11	119212733	119212733	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggccactgtggggactgctCactggctctgtggcctgtgg	17	11	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119212733	A	A	119212733	1	1	26	0	1	0	0	0	0	0	0	0	9619	841	29	3		3	MFRP	11	119212733	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	248938	119212733	15793783	1011	43095											
PVRL1	5818	broad.mit.edu	37	chr11	119599300	119599300	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagaggggcggcgagggCagcgctcctcgcgcagcaga	20	12	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119599300	A	A	119599300	1	1	26	0	1	0	0	0	0	0	0	0	12947	725	25	3		3	PVRL1	11	119599300	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	386567	119599300	15407216	1012	43096											
POU2F3	25833	broad.mit.edu	37	chr11	120186229	120186229	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctacctaagtcaggcttcCctaaatgcatttcaaaggat	6	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120186229	T	T	120186229	1	4	26	0	1	0	0	0	0	0	0	0	12369	638	22	4		4	POU2F3	11	120186229	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	586929	120186229	14820287	1013	43097											
ARHGEF12	23365	broad.mit.edu	37	chr11	120298883	120298883	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcattggacatatgtctcCcatcatgacatctcctcatt	5	12	5	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120298883	T	T	120298883	3	4	26	1	0	0	0	0	1	0	0	0	899	623	22	4	542	4	ARHGEF12	11	120298883	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	112654	120298883	14707633	1014	43098											
GRIK4	2900	broad.mit.edu	37	chr11	120732880	120732880	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttggcctctgcacattgCccctctgtgggccaacccct	8	19	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120732880	T	T	120732880	1	4	26	0	1	0	0	0	0	0	0	0	6842	754	26	4		4	GRIK4	11	120732880	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	433997	120732880	14273636	1015	43099											
TBCEL	219899	broad.mit.edu	37	chr11	120924346	120924346	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcggttttagaaagaacAtgtgctgggtccttctctgg	12	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120924346	T	T	120924346	2	4	26	1	0	0	0	0	0	0	0	1	15757	204	8	5		5	TBCEL	11	120924346	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	191466	120924346	14082170	1016	43100											
SORL1	6653	broad.mit.edu	37	chr11	121429397	121429397	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctggtgtctgaggatgtgAagtggcccaatggcatctct	13	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121429397	T	T	121429397	4	4	26	1	0	0	0	0	0	1	0	0	15048	247	9	5	2839	5	SORL1	11	121429397	Nonsense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	505051	121429397	13577119	1017	43101											
GRAMD1B	57476	broad.mit.edu	37	chr11	123470186	123470186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaccacggcctctcgttGttgctgttttttgaggcgca	10	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123470186	T	T	123470186	1	4	26	0	1	0	0	0	0	0	0	0	6814	1392	48	3		3	GRAMD1B	11	123470186	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2040789	123470186	11536330	1018	43102											
SCN3B	55800	broad.mit.edu	37	chr11	123513341	123513341	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggcgcccctgaaagggGctctccacctcctggtggcc	13	16	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123513341	A	A	123513341	2	1	26	1	0	0	0	0	0	0	0	1	14032	1194	42	4		4	SCN3B	11	123513341	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	43155	123513341	11493175	1019	43103											
OR8D2	283160	broad.mit.edu	37	chr11	124189358	124189358	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagatgcccacagccaAgagatgggagctacaagtgc	11	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124189358	G	G	124189358	2	3	26	1	0	0	0	0	0	0	0	1	11326	69	3	5		5	OR8D2	11	124189358	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	676017	124189358	10817158	1020	43104											
OR8B2	26595	broad.mit.edu	37	chr11	124253151	124253151	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatgtagatcactagaaacAggaaaaagaggggttgccgg	13	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124253151	T	T	124253151	3	4	26	1	0	0	0	0	1	0	0	0	11321	188	7	5	855	5	OR8B2	11	124253151	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	63793	124253151	10753365	1021	43105											
SLC37A2	219855	broad.mit.edu	37	chr11	124954893	124954893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctgaaggctggagagtGctcctgccttggggttgggg	20	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124954893	T	T	124954893	1	4	26	0	1	0	0	0	0	0	0	0	14712	1334	46	3		3	SLC37A2	11	124954893	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	701742	124954893	10051623	1022	43106											
CHEK1	1111	broad.mit.edu	37	chr11	125499354	125499354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttctgttggatgaaagGggtaagtttagcattttatc	10	4	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125499354	T	T	125499354	3	4	26	1	0	0	0	0	1	0	0	0	3365	1246	43	2	437	2	CHEK1	11	125499354	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	544461	125499354	9507162	1023	43107											
DDX25	29118	broad.mit.edu	37	chr11	125780518	125780518	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagttgttattagaattgagAtgacgttggtaaagcattgt	12	2	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125780518	T	T	125780518	1	4	26	0	1	0	0	0	0	0	0	0	4385	348	12	5		5	DDX25	11	125780518	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	281164	125780518	9225998	1024	43108											
KCNJ5	3762	broad.mit.edu	37	chr11	128781127	128781127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagtgaatcagaacagccCacttcactgatggtgtcttt	8	10	4	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128781127	A	A	128781127	1	1	26	0	1	0	0	0	0	0	0	0	8124	609	21	2		2	KCNJ5	11	128781127	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3000609	128781127	6225389	1025	43109											
TP53AIP1	63970	broad.mit.edu	37	chr11	128807310	128807310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttgtttctcagaaaacCtttctgcctcctagaaaccc	5	14	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128807310	A	A	128807310	1	1	26	0	1	0	0	0	0	0	0	0	16506	696	24	2		2	TP53AIP1	11	128807310	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	26183	128807310	6199206	1026	43110											
PRDM10	56980	broad.mit.edu	37	chr11	129785714	129785714	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctctgctcctgggtggttCttcagaatgtgggctttgcg	14	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129785714	G	G	129785714	3	3	26	1	0	0	0	0	1	0	0	0	12557	912	32	4	1127	4	PRDM10	11	129785714	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	978404	129785714	5220802	1027	43111											
NTM	50863	broad.mit.edu	37	chr11	132082105	132082105	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaattttgggcctttggtaGgaggttatgggtgctgatac	16	4	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132082105	C	C	132082105	1	2	26	0	1	0	0	0	0	0	0	0	10794	1015	35	4		4	NTM	11	132082105	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2296391	132082105	2924411	1028	43112											
OPCML	4978	broad.mit.edu	37	chr11	132306555	132306555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcatttaaaaggtacctGgtttcttccttgaaccactg	8	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132306555	T	T	132306555	2	4	26	1	0	0	0	0	0	0	0	1	10968	1335	47	2		2	OPCML	11	132306555	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	224450	132306555	2699961	1029	43113											
IQSEC3	440073	broad.mit.edu	37	chr12	266787	266787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgccatcatcctcctcaaCaccgacatgtacagccccaa	4	18	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	266787	A	A	266787	3	1	26	1	0	0	0	0	1	0	0	0	7889	477	17	3	2396	3	IQSEC3	12	266787	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08		266787	133585108	1030	43114											
SLC6A13	6540	broad.mit.edu	37	chr12	336866	336866	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagggcaagaaaggtgaactCccaggaaagccaggccattc	12	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	336866	G	G	336866	1	3	26	0	1	0	0	0	0	0	0	0	14790	870	30	4		4	SLC6A13	12	336866	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	70079	336866	133515029	1031	43115											
ADIPOR2	79602	broad.mit.edu	37	chr12	1887259	1887259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttattttcatgtatttgaGggtaagcacagaacttcaga	8	5	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1887259	T	T	1887259	1	4	26	0	1	0	0	0	0	0	0	0	319	1015	35	2		2	ADIPOR2	12	1887259	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1550393	1887259	131964636	1032	43116											
CACNA1C	775	broad.mit.edu	37	chr12	2715846	2715846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtgagtagaggtgggaGggcagccagggccacggccg	20	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2715846	T	T	2715846	1	4	26	0	1	0	0	0	0	0	0	0	2566	1015	35	2		2	CACNA1C	12	2715846	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	828587	2715846	131136049	1033	43117											
KCNA1	3736	broad.mit.edu	37	chr12	5020837	5020837	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catcctctactactaccagtCcggcggccgcctgcggaggc	11	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5020837	T	T	5020837	3	4	26	1	0	0	0	0	1	0	0	0	8071	855	30	4	295	4	KCNA1	12	5020837	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2304991	5020837	128831058	1034	43118											
CD163	9332	broad.mit.edu	37	chr12	7647635	7647635	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcaaaggtagtactggaAatttacacccttcttcttaa	5	8	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7647635	C	C	7647635	1	2	26	0	1	0	0	0	0	0	0	0	2997	29	1	5		5	CD163	12	7647635	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2626798	7647635	126204260	1035	43119											
SLC2A3	6515	broad.mit.edu	37	chr12	8085705	8085705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagggtggggcatttccCttgtccgtcaaagttttatt	11	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8085705	A	A	8085705	3	1	26	1	0	0	0	0	1	0	0	0	14659	680	24	2	1375	2	SLC2A3	12	8085705	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	438070	8085705	125766190	1036	43120											
TAS2R46	259292	broad.mit.edu	37	chr12	11214459	11214459	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgattcatgtttatcacAaaaagatgacaaaccaaaaa	4	7	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11214459	C	C	11214459	3	2	26	1	0	0	0	0	1	0	0	0	15701	127	5	5	498	5	TAS2R46	12	11214459	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3128754	11214459	122637436	1037	43121											
SLCO1A2	6579	broad.mit.edu	37	chr12	21446891	21446891	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttaccatgtttattccCgttccaatggatgtctcaca	6	11	2	0	rs148248462		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21446891	A	A	21446891	2	1	26	1	0	0	0	0	0	0	0	1	14836	639	23	1		1	SLCO1A2	12	21446891	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	10232432	21446891	112405004	1038	43122											
SLCO1A2	6579	broad.mit.edu	37	chr12	21471861	21471862	+	Intron	DNP	GG	TT	TT													attgccaacagaaacatctaGgaaaaaaatataagaaaacg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21471862	TT	TT	21471861	1	4	26	0	1	0	0	0	0	0	0	0	14836	1015	35	2		2	SLCO1A2	12	21471861	Intron	DNP	GG	TCGA-05-4432-01A-01D-1265-08	24970	21471861	112380034	1039	43123											
ABCC9	10060	broad.mit.edu	37	chr12	21970121	21970121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaatatttagagcaatacCcattgtgccttcatagttct	5	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21970121	A	A	21970121	3	1	26	1	0	0	0	0	1	0	0	0	59	637	22	2	931	2	ABCC9	12	21970121	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	498260	21970121	111881774	1040	43124											
BCAT1	586	broad.mit.edu	37	chr12	25002634	25002634	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaagtttgaaaagtattAtatgtgttcatactgaagtg	8	2	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25002634	G	G	25002634	1	3	26	0	1	0	0	0	0	0	0	0	1359	464	16	5		5	BCAT1	12	25002634	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	3032513	25002634	108849261	1041	43125											
LRMP	4033	broad.mit.edu	37	chr12	25243005	25243005	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacaggcagaatttctcagAttatctttgggatttaagtg	9	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25243005	T	T	25243005	3	4	26	1	0	0	0	0	1	0	0	0	9037	330	12	5	514	5	LRMP	12	25243005	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	240371	25243005	108608890	1042	43126											
SSPN	8082	broad.mit.edu	37	chr12	26377335	26377335	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttgtgattgttctttctCttttatcatcacatagaaag	6	6	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26377335	G	G	26377335	1	3	26	0	1	0	0	0	0	0	0	0	15306	928	32	4		4	SSPN	12	26377335	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1134330	26377335	107474560	1043	43127											
ITPR2	3709	broad.mit.edu	37	chr12	26553055	26553055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaatacttttactctgGcttacatctttcgatggcct	6	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26553055	T	T	26553055	1	4	26	0	1	0	0	0	0	0	0	0	7991	1218	42	3		3	ITPR2	12	26553055	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	175720	26553055	107298840	1044	43128											
ARNTL2	56938	broad.mit.edu	37	chr12	27529352	27529352	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttgagatggtacatggtGagtggaaaggtacacaaagg	15	3	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27529352	T	T	27529352	1	4	26	0	1	0	0	0	0	0	0	0	972	1305	45	3		3	ARNTL2	12	27529352	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	976297	27529352	106322543	1045	43129											
PPFIBP1	8496	broad.mit.edu	37	chr12	27835424	27835424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagctggatttcaactgGgtcactagtaagaagttttt	12	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27835424	T	T	27835424	3	4	26	1	0	0	0	0	1	0	0	0	12409	1241	43	2	2275	2	PPFIBP1	12	27835424	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	306072	27835424	106016471	1046	43130											
KLHDC5	57542	broad.mit.edu	37	chr12	27934199	27934199	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcattagttcattaccCcagtgtttactgagccagta	7	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27934199	A	A	27934199	1	1	26	0	1	0	0	0	0	0	0	0	8430	638	22	2		2	KLHDC5	12	27934199	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	98775	27934199	105917696	1047	43131											
OVCH1	341350	broad.mit.edu	37	chr12	29630546	29630546	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatttaatggtcctttgatCattcaacattccctgcttca	4	11	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29630546	A	A	29630546	1	1	26	0	1	0	0	0	0	0	0	0	11417	841	29	3		3	OVCH1	12	29630546	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1696347	29630546	104221349	1048	43132											
C12orf35	55196	broad.mit.edu	37	chr12	32137134	32137134	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggccagcaaactacatAccagacctcagaagatcaaa	8	11	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32137134	G	G	32137134	3	3	26	1	0	0	0	0	1	0	0	0	1695	391	14	5	3247	5	C12orf35	12	32137134	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	2506588	32137134	101714761	1049	43133											
ALG10	84920	broad.mit.edu	37	chr12	34175352	34175352	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttatctaaacccgtcactcCgggaaacagcgacccgatct	8	14	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34175352	T	T	34175352	1	4	26	0	1	0	0	0	0	0	0	0	511	667	23	4		4	ALG10	12	34175352	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	2038218	34175352	99676543	1050	43134											
CPNE8	144402	broad.mit.edu	37	chr12	39087640	39087640	+	Frame_Shift_Del	DEL	C	-	-													aagtgggctgagcagggttgCctgatgacagaacacatatt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39087640	-	-	39087640	7	5	26	1	0	1	0	1	0	0	0	0	3850	753	26	0	756	0	CPNE8	12	39087640	Frame_Shift_Del	DEL	C	TCGA-05-4432-01A-01D-1265-08	4912288	39087640	94764255	1051	43135											
KIF21A	55605	broad.mit.edu	37	chr12	39752118	39752118	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggcgtatttcagggtgttTaacgtttccataaagtctct	9	7	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39752118	A	A	39752118	3	1	26	1	0	0	0	0	1	0	0	0	8358	1751	61	5	4071	5	KIF21A	12	39752118	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	664478	39752118	94099777	1052	43136											
ADAMTS20	80070	broad.mit.edu	37	chr12	43826240	43826240	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatacaataagattctcgaGacctttcccctcctccacaa	3	15	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43826240	T	T	43826240	3	4	26	1	0	0	0	0	1	0	0	0	266	942	33	3	2844	3	ADAMTS20	12	43826240	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4074122	43826240	90025655	1053	43137											
ADAMTS20	80070	broad.mit.edu	37	chr12	43837564	43837564	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaattgcacataagccacaTactggctgttgtttacgaga	9	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43837564	C	C	43837564	1	2	26	0	1	0	0	0	0	0	0	0	266	1421	49	5		5	ADAMTS20	12	43837564	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	11324	43837564	90014331	1054	43138											
PUS7L	83448	broad.mit.edu	37	chr12	44130285	44130285	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagtctgtaagatactgCctcattccaaattttgctgg	7	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44130285	G	G	44130285	3	3	26	1	0	0	0	0	1	0	0	0	12942	739	26	4	493	4	PUS7L	12	44130285	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	292721	44130285	89721610	1055	43139											
PUS7L	83448	broad.mit.edu	37	chr12	44136349	44136349	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtccatagtaattcacaaAgccttttttctatgtataca	5	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44136349	C	C	44136349	3	2	26	1	0	0	0	0	1	0	0	0	12942	72	3	5	852	5	PUS7L	12	44136349	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	6064	44136349	89715546	1056	43140											
CCDC65	85478	broad.mit.edu	37	chr12	49315194	49315195	+	Missense_Mutation	DNP	CA	AT	AT													ccttgtccatacgtatagccCatccaggtgataaacaacat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	49315195	AT	AT	49315194	3	1	26	1	0	0	0	0	1	0	0	0	2865	594	21	2	1453	2	CCDC65	12	49315194	Missense_Mutation	DNP	CA	TCGA-05-4432-01A-01D-1265-08	5178845	49315194	84536701	1057	43141											
KRT86	3892	broad.mit.edu	37	chr12	52646152	52646152	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcaggcaggccatgtcCtgcttggccttctgcagggc	13	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52646152	T	T	52646152	1	4	26	0	1	0	0	0	0	0	0	0	8571	696	24	4		4	KRT86	12	52646152	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3330958	52646152	81205743	1058	43142											
KRT75	9119	broad.mit.edu	37	chr12	52818459	52818459	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtgaaggagtagccgcTgcccccaccgaggcccaggt	16	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52818459	G	G	52818459	3	3	26	1	0	0	0	0	1	0	0	0	8559	1580	55	5	161	5	KRT75	12	52818459	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	172307	52818459	81033436	1059	43143											
KRT75	9119	broad.mit.edu	37	chr12	52822519	52822519	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctgcggtgacctgcagCtcctcgtactgagagaacca	11	14	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52822519	G	G	52822519	3	3	26	1	0	0	0	0	1	0	0	0	8559	796	28	4	627	4	KRT75	12	52822519	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4060	52822519	81029376	1060	43144											
KRT5	3852	broad.mit.edu	37	chr12	52910816	52910816	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgtgtttagcaaaagtaAaacaaaataaaacaaagtag	8	4	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52910816	T	T	52910816	1	4	26	0	1	0	0	0	0	0	0	0	8550	29	1	5		5	KRT5	12	52910816	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	88297	52910816	80941079	1061	43145											
KRT74	121391	broad.mit.edu	37	chr12	52965672	52965672	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggctgaagtcctgagcagAgttgttaagatgggggtgcg	18	5	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52965672	T	T	52965672	1	4	26	0	1	0	0	0	0	0	0	0	8558	319	11	5		5	KRT74	12	52965672	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	54856	52965672	80886223	1062	43146											
AMHR2	269	broad.mit.edu	37	chr12	53819601	53819601	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcattgtacgaacttccAggcctacagcacgaccacat	8	13	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53819601	G	G	53819601	2	3	26	1	0	0	0	0	0	0	0	1	573	175	7	5		5	AMHR2	12	53819601	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	853929	53819601	80032294	1063	43147											
NCKAP1L	3071	broad.mit.edu	37	chr12	54901762	54901762	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtctaggttgggaggtctAggtctactcacaggatgggg	17	6	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54901762	T	T	54901762	1	4	26	0	1	0	0	0	0	0	0	0	10317	435	15	5		5	NCKAP1L	12	54901762	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1082161	54901762	78950133	1064	43148											
NCKAP1L	3071	broad.mit.edu	37	chr12	54925124	54925124	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatgtggcatgtgacctctCagattgtggagctgaaggta	14	6	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54925124	T	T	54925124	4	4	26	1	0	0	0	0	0	1	0	0	10317	827	29	4	2677	4	NCKAP1L	12	54925124	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	23362	54925124	78926771	1065	43149											
OR9K2	441639	broad.mit.edu	37	chr12	55524459	55524459	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcatccttatgttactccCtagtcactcccatgttgaat	6	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55524459	T	T	55524459	2	4	26	1	0	0	0	0	0	0	0	1	11348	680	24	4		4	OR9K2	12	55524459	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	599335	55524459	78327436	1066	43150											
OR6C1	390321	broad.mit.edu	37	chr12	55715313	55715313	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaagactgtatttttcacAagcacatgaaatggtatggt	10	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55715313	C	C	55715313	2	2	26	1	0	0	0	0	0	0	0	1	11284	117	5	5		5	OR6C1	12	55715313	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	190854	55715313	78136582	1067	43151											
METTL7B	196410	broad.mit.edu	37	chr12	56075950	56075950	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagctggctgatggctccAtggatgtggtggtctgcact	15	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56075950	G	G	56075950	3	3	26	1	0	0	0	0	1	0	0	0	9599	217	8	5	414	5	METTL7B	12	56075950	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	360637	56075950	77775945	1068	43152											
DNAJC14	85406	broad.mit.edu	37	chr12	56221691	56221699	+	In_Frame_Del	DEL	CCTGCCTGT	-	-													gttcaatcagccaccaaaagCctgcctgtccaagttgacat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56221699	-	-	56221691	7	5	26	1	0	1	0	1	0	0	0	0	4673	739	26	0	1380	0	DNAJC14	12	56221691	In_Frame_Del	DEL	CCTGCCTGT	TCGA-05-4432-01A-01D-1265-08	145741	56221691	77630204	1069	43153											
SILV	6490	broad.mit.edu	37	chr12	56355437	56355437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaagtctctgggcttctgtCcactctggatacagctgcct	9	13	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56355437	A	A	56355437	3	1	26	1	0	0	0	0	1	0	0	0	14435	856	30	3	1869	3	SILV	12	56355437	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	133746	56355437	77496458	1070	43154											
PA2G4	5036	broad.mit.edu	37	chr12	56498385	56498385	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctctcgcctgcctgcccgCtcccttgcttgctcgcgctt	9	20	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56498385	T	T	56498385	1	4	26	0	1	0	0	0	0	0	0	0	11455	812	28	4		4	PA2G4	12	56498385	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	142948	56498385	77353510	1071	43155											
ARHGAP9	64333	broad.mit.edu	37	chr12	57870424	57870424	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatgttgagcagacccgacTtttccacctcctgggaagtg	10	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57870424	A	A	57870424	3	1	26	1	0	0	0	0	1	0	0	0	891	1609	56	5	1269	5	ARHGAP9	12	57870424	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1372039	57870424	75981471	1072	43156											
LRIG3	121227	broad.mit.edu	37	chr12	59279771	59279771	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaactgctttttaaattaTgtgtgagcaattccattttc	6	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59279771	C	C	59279771	1	2	26	0	1	0	0	0	0	0	0	0	9033	1479	51	5		5	LRIG3	12	59279771	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1409347	59279771	74572124	1073	43157											
MON2	23041	broad.mit.edu	37	chr12	62965393	62965393	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatttttaaaattaagacaAgaagtggcacattatatctt	5	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62965393	G	G	62965393	1	3	26	0	1	0	0	0	0	0	0	0	9794	87	3	5		5	MON2	12	62965393	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	3685622	62965393	70886502	1074	43158											
XPOT	11260	broad.mit.edu	37	chr12	64814133	64814133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttattgtcccattaccagGtttataaatatgctgctagg	7	7	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64814133	T	T	64814133	3	4	26	1	0	0	0	0	1	0	0	0	17577	1275	44	3	701	3	XPOT	12	64814133	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1848740	64814133	69037762	1075	43159											
GRIP1	23426	broad.mit.edu	37	chr12	66814542	66814542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatatctgaaatgacgaggGggtctcctggttttctactg	12	7	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66814542	T	T	66814542	3	4	26	1	0	0	0	0	1	0	0	0	6853	1232	43	2	1634	2	GRIP1	12	66814542	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2000409	66814542	67037353	1076	43160											
THAP2	83591	broad.mit.edu	37	chr12	72058476	72058476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactttcccagctggtagcaGggaagcatcgtatgtccttt	10	10	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72058476	T	T	72058476	1	4	26	0	1	0	0	0	0	0	0	0	15967	1015	35	2		2	THAP2	12	72058476	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	5243934	72058476	61793419	1077	43161											
TRHDE	29953	broad.mit.edu	37	chr12	72667204	72667204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctacccgcaaacccagGtcttagtggtggtgctgaat	10	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72667204	T	T	72667204	3	4	26	1	0	0	0	0	1	0	0	0	16603	1261	44	3	648	3	TRHDE	12	72667204	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	608728	72667204	61184691	1078	43162											
KCNC2	3747	broad.mit.edu	37	chr12	75436824	75436824	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttaattatttccattaTggggtaaacagcacttgaat	6	6	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75436824	C	C	75436824	1	2	26	0	1	0	0	0	0	0	0	0	8085	1479	51	5		5	KCNC2	12	75436824	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2769620	75436824	58415071	1079	43163											
CAPS2	84698	broad.mit.edu	37	chr12	75692486	75692486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacataaaaatcaccaagtCggtattgttttccttttctt	4	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75692486	A	A	75692486	3	1	26	1	0	0	0	0	1	0	0	0	2664	884	31	3	619	3	CAPS2	12	75692486	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	255662	75692486	58159409	1080	43164											
OSBPL8	114882	broad.mit.edu	37	chr12	76784449	76784449	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatttaaccttaagggaaaGaatttttaggaggaagaatc	9	4	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76784449	T	T	76784449	1	4	26	0	1	0	0	0	0	0	0	0	11377	957	33	3		3	OSBPL8	12	76784449	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1091963	76784449	57067446	1081	43165											
NAV3	89795	broad.mit.edu	37	chr12	78444710	78444710	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggctatcctcgcagtGgtaccagtcgattcatccac	10	13	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78444710	C	C	78444710	3	2	26	1	0	0	0	0	1	0	0	0	10279	1348	47	4	2341	4	NAV3	12	78444710	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1660261	78444710	55407185	1082	43166											
NAV3	89795	broad.mit.edu	37	chr12	78571145	78571145	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttttaaaaacaattttaGatgaaggccttatttatgtt	5	3	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78571145	T	T	78571145	1	4	26	0	1	0	0	0	0	0	0	0	10279	957	33	3		3	NAV3	12	78571145	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	126435	78571145	55280750	1083	43167											
TMTC2	160335	broad.mit.edu	37	chr12	83359552	83359552	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcctctctgtccttttcCctcccccttgttctgatcca	4	17	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83359552	T	T	83359552	1	4	26	0	1	0	0	0	0	0	0	0	16384	638	22	4		4	TMTC2	12	83359552	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4788407	83359552	50492343	1084	43168											
EEA1	8411	broad.mit.edu	37	chr12	93202760	93202760	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacttagttcacaatcttttCccttaatttgtaagtaaagt	4	7	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93202760	A	A	93202760	1	1	26	0	1	0	0	0	0	0	0	0	4961	870	30	3		3	EEA1	12	93202760	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	9843208	93202760	40649135	1085	43169											
PLXNC1	10154	broad.mit.edu	37	chr12	94562910	94562910	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attattattatttttttgtgCgtttgtgtgcatgttcagaa	8	3	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94562910	T	T	94562910	1	4	26	0	1	0	0	0	0	0	0	0	12221	783	27	4		4	PLXNC1	12	94562910	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1360150	94562910	39288985	1086	43170											
USP44	84101	broad.mit.edu	37	chr12	95922551	95922551	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctctttatcattcctagGaaagcaccaagaacacaacg	5	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95922551	T	T	95922551	1	4	26	0	1	0	0	0	0	0	0	0	17202	1189	41	3		3	USP44	12	95922551	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1359641	95922551	37929344	1087	43171											
NTN4	59277	broad.mit.edu	37	chr12	96066633	96066633	+	Intron	DEL	C	-	-													gaaatgggtactgattgcagCccatggcaacagcctccggg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96066633	-	-	96066633	6	5	26	0	1	1	0	1	0	0	0	0	10797	754	26	0		0	NTN4	12	96066633	Intron	DEL	C	TCGA-05-4432-01A-01D-1265-08	144082	96066633	37785262	1088	43172											
NTN4	59277	broad.mit.edu	37	chr12	96066711	96066711	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcatggagctgaacctgcTgactggtattcccattgtct	9	10	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96066711	A	A	96066711	1	1	26	0	1	0	0	0	0	0	0	0	10797	1595	55	5		5	NTN4	12	96066711	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	78	96066711	37785184	1089	43173											
ELK3	2004	broad.mit.edu	37	chr12	96641401	96641401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaaaacccaaaggcttGgaaatctcagcgcccccgct	8	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96641401	T	T	96641401	3	4	26	1	0	0	0	0	1	0	0	0	5102	1339	47	2	897	2	ELK3	12	96641401	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	574690	96641401	37210494	1090	43174											
C12orf63	374467	broad.mit.edu	37	chr12	97051523	97051523	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatcaaattatcaagctttGacttgcataagaaaaatatt	5	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97051523	T	T	97051523	1	4	26	0	1	0	0	0	0	0	0	0	1719	1305	45	3		3	C12orf63	12	97051523	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	410122	97051523	36800372	1091	43175											
APAF1	317	broad.mit.edu	37	chr12	99074148	99074148	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctacagatgacagatttAtagcaacctgctcagtggat	8	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99074148	G	G	99074148	3	3	26	1	0	0	0	0	1	0	0	0	757	449	16	5	2064	5	APAF1	12	99074148	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	2022625	99074148	34777747	1092	43176											
SLC17A8	246213	broad.mit.edu	37	chr12	100774686	100774686	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagttgccattgtggaaatGgtcaacaatagcaccgtata	11	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100774686	A	A	100774686	3	1	26	1	0	0	0	0	1	0	0	0	14536	1348	47	4	315	4	SLC17A8	12	100774686	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1700538	100774686	33077209	1093	43177											
NR1H4	9971	broad.mit.edu	37	chr12	100928738	100928738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagcatgcagatcagacCgtgaatgaagacagtgaagg	13	7	1	6			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100928738	A	A	100928738	2	1	26	1	0	0	0	0	0	0	0	1	10714	639	23	1		1	NR1H4	12	100928738	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	154052	100928738	32923157	1094	43178											
UTP20	27340	broad.mit.edu	37	chr12	101731765	101731765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggtgaaaattcatatGgacatgtttttagaagtgaa	9	4	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101731765	T	T	101731765	1	4	26	0	1	0	0	0	0	0	0	0	17226	1363	47	2		2	UTP20	12	101731765	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	803027	101731765	32120130	1095	43179											
HCFC2	29915	broad.mit.edu	37	chr12	104474504	104474504	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttagatcaagttgctaatAtaattatttttacttttaga	5	3	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104474504	G	G	104474504	1	3	26	0	1	0	0	0	0	0	0	0	7059	464	16	5		5	HCFC2	12	104474504	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2742739	104474504	29377391	1096	43180											
POLR3B	55703	broad.mit.edu	37	chr12	106890686	106890686	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagactatgttacatccGgcatcacagggtaagcatgc	11	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106890686	A	A	106890686	3	1	26	1	0	0	0	0	1	0	0	0	12324	1116	39	4	3072	4	POLR3B	12	106890686	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2416182	106890686	26961209	1097	43181											
CRY1	1407	broad.mit.edu	37	chr12	107393382	107393382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgtgtcaggaagcaagCaactgcatgcctggctagat	11	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107393382	A	A	107393382	3	1	26	1	0	0	0	0	1	0	0	0	3935	710	25	3	700	3	CRY1	12	107393382	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	502696	107393382	26458513	1098	43182											
BTBD11	121551	broad.mit.edu	37	chr12	108051444	108051444	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacttacagaggacgttggcCatcagaattcagtccatcca	9	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108051444	G	G	108051444	2	3	26	1	0	0	0	0	0	0	0	1	1548	581	21	4		4	BTBD11	12	108051444	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	658062	108051444	25800451	1099	43183											
ACACB	32	broad.mit.edu	37	chr12	109637270	109637270	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaacgatcctacagtcctGagatccccctcggctgggaa	11	13	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109637270	T	T	109637270	2	4	26	1	0	0	0	0	0	0	0	1	107	1277	45	3		3	ACACB	12	109637270	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1585826	109637270	24214625	1100	43184											
C12orf51	283450	broad.mit.edu	37	chr12	112665893	112665893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtggggagggtactcacCttgtccttatttcagcaagg	12	8	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112665893	A	A	112665893	3	1	26	1	0	0	0	0	1	0	0	0	1709	695	24	2	6538	2	C12orf51	12	112665893	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	3028623	112665893	21186002	1101	43185											
C12orf51	283450	broad.mit.edu	37	chr12	112703647	112703647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaactaacgactgagaacaCaaaggctagaagtgaataat	8	6	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112703647	A	A	112703647	1	1	26	0	1	0	0	0	0	0	0	0	1709	493	17	3		3	C12orf51	12	112703647	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	37754	112703647	21148248	1102	43186											
FBXO21	23014	broad.mit.edu	37	chr12	117595937	117595937	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttcttttttgcggcgaggGatttagacctacctacgtaa	9	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117595937	A	A	117595937	1	1	26	0	1	0	0	0	0	0	0	0	5790	1189	41	4		4	FBXO21	12	117595937	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4892290	117595937	16255958	1103	43187											
LRRC43	254050	broad.mit.edu	37	chr12	122677577	122677577	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggaaatctgaaccagggCaagtggtcagagcagtaggg	16	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122677577	T	T	122677577	1	4	26	0	1	0	0	0	0	0	0	0	9088	725	25	4		4	LRRC43	12	122677577	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	5081640	122677577	11174318	1104	43188											
DNAH10	196385	broad.mit.edu	37	chr12	124268489	124268489	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtgtgttcatttcacctCtcagggtaaaggccctctgg	10	10	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124268489	A	A	124268489	1	1	26	0	1	0	0	0	0	0	0	0	4638	928	32	3		3	DNAH10	12	124268489	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1590912	124268489	9583406	1105	43189											
DNAH10	196385	broad.mit.edu	37	chr12	124383367	124383367	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaacaccgctgtaggtgagTgagggcggggccagggcagc	18	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124383367	A	A	124383367	1	1	26	0	1	0	0	0	0	0	0	0	4638	1711	59	5		5	DNAH10	12	124383367	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	114878	124383367	9468528	1106	43190											
NCOR2	9612	broad.mit.edu	37	chr12	124862883	124862883	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagcctcctcgctggcCgccgccggcgctttcttctt	10	17	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124862883	A	A	124862883	2	1	26	1	0	0	0	0	0	0	0	1	10331	639	23	1		1	NCOR2	12	124862883	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	479516	124862883	8989012	1107	43191											
TMEM132D	121256	broad.mit.edu	37	chr12	129559152	129559152	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcaggatggacctgtctgtCgtggtgccccgtccctccat	12	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129559152	G	G	129559152	2	3	26	1	0	0	0	0	0	0	0	1	16170	871	31	4		4	TMEM132D	12	129559152	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	4696269	129559152	4292743	1108	43192											
CHFR	55743	broad.mit.edu	37	chr12	133424567	133424567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctccccaacccgcagcGggtcaggtaaaacagataaa	10	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133424567	T	T	133424567	1	4	26	0	1	0	0	0	0	0	0	0	3368	1131	39	1		1	CHFR	12	133424567	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3865415	133424567	427328	1109	43193											
CHFR	55743	broad.mit.edu	37	chr12	133447364	133447364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagattcatagaggtatgCcacgtctaaaagaaaatcaa	7	6	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133447364	A	A	133447364	3	1	26	1	0	0	0	0	1	0	0	0	3368	739	26	3	1798	3	CHFR	12	133447364	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	22797	133447364	404531	1110	43194											
ATP12A	479	broad.mit.edu	37	chr13	25266550	25266550	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatttttcccaaagcgtcCttccctctcctgctaggtga	8	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25266550	T	T	25266550	1	4	26	0	1	0	0	0	0	0	0	0	1126	696	24	4		4	ATP12A	13	25266550	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08		25266550	89903328	1111	43195											
ATP8A2	51761	broad.mit.edu	37	chr13	26542831	26542831	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaggtggggaactccgTcccagtccgcacagaacaca	12	12	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26542831	A	A	26542831	1	1	26	0	1	0	0	0	0	0	0	0	1197	1682	58	5		5	ATP8A2	13	26542831	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1276281	26542831	88627047	1112	43196											
SHISA2	387914	broad.mit.edu	37	chr13	26620787	26620787	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagagtcgtgctgcaccGtgtaccccacgtatggggga	14	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26620787	A	A	26620787	3	1	26	1	0	0	0	0	1	0	0	0	14393	1145	40	4	139	4	SHISA2	13	26620787	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	77956	26620787	88549091	1113	43197											
KATNAL1	84056	broad.mit.edu	37	chr13	30854435	30854435	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaataataaattactatAgagtgcacgttttcttaatg	6	4	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30854435	G	G	30854435	1	3	26	0	1	0	0	0	0	0	0	0	8055	435	15	5		5	KATNAL1	13	30854435	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	4233648	30854435	84315443	1114	43198											
HSPH1	10808	broad.mit.edu	37	chr13	31712457	31712457	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaggtaaaagatttacaGgaaaaatggctatgttgaag	12	2	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31712457	A	A	31712457	1	1	26	0	1	0	0	0	0	0	0	0	7501	1015	35	4		4	HSPH1	13	31712457	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	858022	31712457	83457421	1115	43199											
FRY	10129	broad.mit.edu	37	chr13	32868713	32868713	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcagggagtgcaggtgacTctgctatttcttttagaggt	13	6	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32868713	C	C	32868713	1	2	26	0	1	0	0	0	0	0	0	0	6123	1566	54	5		5	FRY	13	32868713	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1156256	32868713	82301165	1116	43200											
SLC25A15	10166	broad.mit.edu	37	chr13	41382521	41382521	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acattgacctctggaaatgtCacatcagctgttcttgagac	8	10	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41382521	G	G	41382521	1	3	26	0	1	0	0	0	0	0	0	0	14591	841	29	4		4	SLC25A15	13	41382521	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	8513808	41382521	73787357	1117	43201											
UTP14C	9724	broad.mit.edu	37	chr13	52593029	52593029	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatatcacattgattctcaActttgtcctcttatttcagg	4	9	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52593029	G	G	52593029	1	3	26	0	1	0	0	0	0	0	0	0	17223	58	2	5		5	UTP14C	13	52593029	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	11210508	52593029	62576849	1118	43202											
NEK3	4752	broad.mit.edu	37	chr13	52709865	52709865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatacagacatgaattacCtggtctatatattgtgtatg	7	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52709865	A	A	52709865	3	1	26	1	0	0	0	0	1	0	0	0	10420	695	24	2	223	2	NEK3	13	52709865	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	116836	52709865	62460013	1119	43203											
PCDH17	27253	broad.mit.edu	37	chr13	58207531	58207531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctctactctttcagcaGctacgtgcctgaccgcgtgc	10	14	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207531	T	T	58207531	3	4	26	1	0	0	0	0	1	0	0	0	11606	971	34	3	853	3	PCDH17	13	58207531	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	5497666	58207531	56962347	1120	43204											
ABCC4	10257	broad.mit.edu	37	chr13	95829973	95829973	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acactcacagttcgaacaagTgtctgctaacttccgcatct	6	13	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95829973	A	A	95829973	3	1	26	1	0	0	0	0	1	0	0	0	55	1696	59	5	2387	5	ABCC4	13	95829973	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	37622442	95829973	19339905	1121	43205											
DZIP1	22873	broad.mit.edu	37	chr13	96277240	96277240	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctgaagaaaataagcaatAtttaaaataaaagttcatag	6	3	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96277240	T	T	96277240	1	4	26	0	1	0	0	0	0	0	0	0	4903	464	16	5		5	DZIP1	13	96277240	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	447267	96277240	18892638	1122	43206											
DZIP1	22873	broad.mit.edu	37	chr13	96293708	96293708	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctcaggcgcagccgctcCtccagggtgtgcagctgcga	15	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96293708	T	T	96293708	2	4	26	1	0	0	0	0	0	0	0	1	4903	680	24	4		4	DZIP1	13	96293708	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	16468	96293708	18876170	1123	43207											
NALCN	259232	broad.mit.edu	37	chr13	101710333	101710333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatttcctctggggtttccCtgcgtcggctgcatcttgcc	10	13	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101710333	A	A	101710333	3	1	26	1	0	0	0	0	1	0	0	0	10242	681	24	2	243	2	NALCN	13	101710333	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	5416625	101710333	13459545	1124	43208											
DAOA	267012	broad.mit.edu	37	chr13	106142150	106142150	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgggcaggagctgggaCttctaaccaatggaacatgg	14	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106142150	T	T	106142150	1	4	26	0	1	0	0	0	0	0	0	0	4265	565	20	4		4	DAOA	13	106142150	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4431817	106142150	9027728	1125	43209											
RASA3	22821	broad.mit.edu	37	chr13	114792814	114792814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccagactttctgccaacGtgtctcgggtgcagagtttc	11	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114792814	T	T	114792814	1	4	26	0	1	0	0	0	0	0	0	0	13170	1160	40	3		3	RASA3	13	114792814	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	8650664	114792814	377064	1126	43210											
OR4Q3	441669	broad.mit.edu	37	chr14	20215538	20215539	+	5'Flank	DNP	CC	AA	AA													atatatctaccttaaatctcCcttgttctgatttaattctt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20215539	AA	AA	20215538	1	1	26	0	1	0	0	0	0	0	0	0	11175	638	22	2		2	OR4Q3	14	20215538	5'Flank	DNP	CC	TCGA-05-4432-01A-01D-1265-08		20215538	87134002	1127	43211											
OR4Q3	441669	broad.mit.edu	37	chr14	20216093	20216094	+	Frame_Shift_Ins	INS	-	T	T													tagtcatccagctgcctttcINStgtgggcccaatgaactgga							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20216094	T	T	20216093	7	5	26	1	0	1	1	0	0	0	0	0	11175	912	32	0	509	0	OR4Q3	14	20216093	Frame_Shift_Ins	INS	-	TCGA-05-4432-01A-01D-1265-08	555	20216093	87133447	1128	43212											
OR4Q3	441669	broad.mit.edu	37	chr14	20216282	20216282	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaacacacttctgccaGggccagaacaaggtcttctc	9	13	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20216282	A	A	20216282	2	1	26	1	0	0	0	0	0	0	0	1	11175	991	35	4		4	OR4Q3	14	20216282	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	189	20216282	87133258	1129	43213											
OR4K1	79544	broad.mit.edu	37	chr14	20403987	20403987	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attatttcttttgactcccaTttgaactctcctatgtactt	3	10	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20403987	C	C	20403987	2	2	26	1	0	0	0	0	0	0	0	1	11161	1490	52	5		5	OR4K1	14	20403987	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	187705	20403987	86945553	1130	43214											
OR4N5	390437	broad.mit.edu	37	chr14	20612039	20612039	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcctcatcattttcaccAtaaagtcagaccctgggctc	5	13	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20612039	T	T	20612039	3	4	26	1	0	0	0	0	1	0	0	0	11173	217	8	5	147	5	OR4N5	14	20612039	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	208052	20612039	86737501	1131	43215											
OR4N5	390437	broad.mit.edu	37	chr14	20612550	20612550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccttctggcctcctatgCagtcatcctctgtcgtataa	9	13	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612550	A	A	20612550	3	1	26	1	0	0	0	0	1	0	0	0	11173	710	25	3	658	3	OR4N5	14	20612550	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	511	20612550	86736990	1132	43216											
OR11G2	390439	broad.mit.edu	37	chr14	20665955	20665955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagaatgctttttcctggCagttatggcatttgatcgat	9	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20665955	A	A	20665955	3	1	26	1	0	0	0	0	1	0	0	0	11019	710	25	3	463	3	OR11G2	14	20665955	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	53405	20665955	86683585	1133	43217											
TEP1	7011	broad.mit.edu	37	chr14	20852618	20852618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccaaactcctccagccCgccaacatagggccggccag	9	19	0	0	rs147687706	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20852618	A	A	20852618	3	1	26	1	0	0	0	0	1	0	0	0	15881	652	23	1	4744	1	TEP1	14	20852618	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	186663	20852618	86496922	1134	43218											
RNASE11	122651	broad.mit.edu	37	chr14	21051954	21051954	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatagtgctaaagagtagaTattaaggaaaggtttaaaca	9	3	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21051954	A	A	21051954	1	1	26	0	1	0	0	0	0	0	0	0	13512	1421	49	5		5	RNASE11	14	21051954	3'UTR	SNP	T	TCGA-05-4432-01A-01D-1265-08	199336	21051954	86297586	1135	43219											
RNASE11	122651	broad.mit.edu	37	chr14	21052309	21052309	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgcacgatccgtttgcttCtgaaacttttctccagactg	7	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21052309	G	G	21052309	3	3	26	1	0	0	0	0	1	0	0	0	13512	922	32	4	278	4	RNASE11	14	21052309	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	355	21052309	86297231	1136	43220											
RNASE11	122651	broad.mit.edu	37	chr14	21052324	21052324	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcttctgaaacttttctccAgactgtcatgtcattgcaac	6	11	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21052324	T	T	21052324	3	4	26	1	0	0	0	0	1	0	0	0	13512	188	7	5	293	5	RNASE11	14	21052324	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	15	21052324	86297216	1137	43221											
SUPT16H	11198	broad.mit.edu	37	chr14	21831342	21831342	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatccaatttatcacaacacGtgagccatatgacagccgag	7	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21831342	A	A	21831342	1	1	26	0	1	0	0	0	0	0	0	0	15514	1160	40	4		4	SUPT16H	14	21831342	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	779018	21831342	85518198	1138	43222											
CEBPE	1053	broad.mit.edu	37	chr14	23586879	23586879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcttggccttgtctcgGctcttgcgcacggcgatgtt	12	14	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23586879	T	T	23586879	3	4	26	1	0	0	0	0	1	0	0	0	3232	1194	42	3	186	3	CEBPE	14	23586879	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1755537	23586879	83762661	1139	43223											
MYH7	4625	broad.mit.edu	37	chr14	23900116	23900116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctctgactcacccagcaGctcaggctttttgttagaca	9	12	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23900116	T	T	23900116	3	4	26	1	0	0	0	0	1	0	0	0	10133	962	34	3	5042	3	MYH7	14	23900116	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	313237	23900116	83449424	1140	43224											
HECTD1	25831	broad.mit.edu	37	chr14	31644054	31644054	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtctatcataattataaAcaggggaacactaaaaaaat	5	6	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31644054	G	G	31644054	1	3	26	0	1	0	0	0	0	0	0	0	7106	58	2	5		5	HECTD1	14	31644054	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	7743938	31644054	75705486	1141	43225											
PSMA6	5687	broad.mit.edu	37	chr14	35782001	35782001	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatggccaaagtcatgattAgcagcagctatgtgacacca	10	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35782001	T	T	35782001	1	4	26	0	1	0	0	0	0	0	0	0	12777	435	15	5		5	PSMA6	14	35782001	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	4137947	35782001	71567539	1142	43226											
FSCB	84075	broad.mit.edu	37	chr14	44974853	44974853	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcttctgcaggggtctcCatagctgttgaaagctgaag	12	10	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44974853	T	T	44974853	3	4	26	1	0	0	0	0	1	0	0	0	6126	594	21	4	1143	4	FSCB	14	44974853	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	9192852	44974853	62374687	1143	43227											
FANCM	57697	broad.mit.edu	37	chr14	45605798	45605798	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggaattcctgacccatgtgGaatagttcccaagctacaac	9	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45605798	C	C	45605798	1	2	26	0	1	0	0	0	0	0	0	0	5728	1189	41	4		4	FANCM	14	45605798	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	630945	45605798	61743742	1144	43228											
C14orf37	145407	broad.mit.edu	37	chr14	58604955	58604955	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagggctgtgcccgtgtgTgtttccccttcaggcagccc	13	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58604955	G	G	58604955	2	3	26	1	0	0	0	0	0	0	0	1	1784	1683	59	5		5	C14orf37	14	58604955	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	12999157	58604955	48744585	1145	43229											
C14orf37	145407	broad.mit.edu	37	chr14	58711527	58711527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccacagagaaaaaggttaTtggttggcagttcagccaat	11	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58711527	C	C	58711527	1	2	26	0	1	0	0	0	0	0	0	0	1784	1508	52	5		5	C14orf37	14	58711527	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	106572	58711527	48638013	1146	43230											
TOMM20L	387990	broad.mit.edu	37	chr14	58869474	58869474	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgggagaactttggttatCtagaggtaagaatgtaaatg	13	2	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58869474	A	A	58869474	3	1	26	1	0	0	0	0	1	0	0	0	16478	913	32	3	267	3	TOMM20L	14	58869474	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	157947	58869474	48480066	1147	43231											
KIAA0586	9786	broad.mit.edu	37	chr14	58955611	58955611	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtaagttaatttgtattaGttgattttacttgttagatt	8	1	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58955611	C	C	58955611	1	2	26	0	1	0	0	0	0	0	0	0	8256	1044	36	4		4	KIAA0586	14	58955611	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	86137	58955611	48393929	1148	43232											
C14orf39	317761	broad.mit.edu	37	chr14	60903806	60903806	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatcatgctcttcatattAtataaaatttttataaccta	1	6	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60903806	G	G	60903806	1	3	26	0	1	0	0	0	0	0	0	0	1785	464	16	5		5	C14orf39	14	60903806	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1948195	60903806	46445734	1149	43233											
SYNE2	23224	broad.mit.edu	37	chr14	64599255	64599255	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctagttatcattaagctAtagttaaatggaagcctgac	7	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64599255	G	G	64599255	1	3	26	0	1	0	0	0	0	0	0	0	15565	464	16	5		5	SYNE2	14	64599255	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	3695449	64599255	42750285	1150	43234											
MTHFD1	4522	broad.mit.edu	37	chr14	64902465	64902465	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccagaagagttgttaaaAtgtgaggctcagaagcttcc	10	9	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64902465	G	G	64902465	1	3	26	0	1	0	0	0	0	0	0	0	10021	116	4	5		5	MTHFD1	14	64902465	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	303210	64902465	42447075	1151	43235											
FAM71D	161142	broad.mit.edu	37	chr14	67671667	67671667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaggtcccagaggtccCggatgtaagaattgtcacag	12	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67671667	A	A	67671667	3	1	26	1	0	0	0	0	1	0	0	0	5661	652	23	1	783	1	FAM71D	14	67671667	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2769202	67671667	39677873	1152	43236											
PLEKHH1	57475	broad.mit.edu	37	chr14	68042641	68042641	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggaggaaccagacggttGctttcctcccactgcaccct	10	15	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68042641	A	A	68042641	2	1	26	1	0	0	0	0	0	0	0	1	12171	1310	46	4		4	PLEKHH1	14	68042641	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	370974	68042641	39306899	1153	43237											
ZFYVE26	23503	broad.mit.edu	37	chr14	68222902	68222902	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcagaagtcttgagccTggttctggcactgtctggga	14	8	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68222902	A	A	68222902	1	1	26	0	1	0	0	0	0	0	0	0	17794	1595	55	5		5	ZFYVE26	14	68222902	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	180261	68222902	39126638	1154	43238											
RGS6	9628	broad.mit.edu	37	chr14	72925146	72925146	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacatcatctgatcttagGttagaactacaaagaaaacc	5	9	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72925146	T	T	72925146	1	4	26	0	1	0	0	0	0	0	0	0	13418	1276	44	3		3	RGS6	14	72925146	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4702244	72925146	34424394	1155	43239											
KIAA0317	9870	broad.mit.edu	37	chr14	75152410	75152410	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctccaactctgcctcaTagctatctcagagtaagaca	6	12	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75152410	G	G	75152410	1	3	26	0	1	0	0	0	0	0	0	0	8237	1421	49	5		5	KIAA0317	14	75152410	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2227264	75152410	32197130	1156	43240											
EIF2B2	8892	broad.mit.edu	37	chr14	75469819	75469819	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggagaccctagggttgctGcgccagatcatcacggacca	13	13	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75469819	C	C	75469819	2	2	26	1	0	0	0	0	0	0	0	1	5041	1306	46	4		4	EIF2B2	14	75469819	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	317409	75469819	31879721	1157	43241											
STON2	85439	broad.mit.edu	37	chr14	81862171	81862171	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaatcctggcagccctaTagacctctcactgaaaagca	8	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81862171	C	C	81862171	1	2	26	0	1	0	0	0	0	0	0	0	15436	1421	49	5		5	STON2	14	81862171	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	6392352	81862171	25487369	1158	43242											
GALC	2581	broad.mit.edu	37	chr14	88401002	88401002	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatactgttccaatgaaaCaagaattggctctgaaccaa	6	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88401002	A	A	88401002	1	1	26	0	1	0	0	0	0	0	0	0	6263	493	17	3		3	GALC	14	88401002	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	6538831	88401002	18948538	1159	43243											
TRIP11	9321	broad.mit.edu	37	chr14	92460140	92460140	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaacctacaagagaaaacTattttgtcctacctgtaatg	5	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92460140	G	G	92460140	1	3	26	0	1	0	0	0	0	0	0	0	16680	1537	53	5		5	TRIP11	14	92460140	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	4059138	92460140	14889400	1160	43244											
CLMN	79789	broad.mit.edu	37	chr14	95661001	95661001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctcagttgtacggtcaCccccatcctggggtttccac	10	14	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95661001	A	A	95661001	1	1	26	0	1	0	0	0	0	0	0	0	3574	522	18	3		3	CLMN	14	95661001	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	3200861	95661001	11688539	1161	43245											
C14orf49	161176	broad.mit.edu	37	chr14	95906001	95906001	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgccacgactctgccagctCcctgagctcctcctgcacca	7	21	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95906001	G	G	95906001	3	3	26	1	0	0	0	0	1	0	0	0	1789	864	30	4	757	4	C14orf49	14	95906001	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	245000	95906001	11443539	1162	43246											
AK7	122481	broad.mit.edu	37	chr14	96922763	96922763	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attggccaactactacaaacTgcatcacatccaactgaagg	6	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96922763	C	C	96922763	3	2	26	1	0	0	0	0	1	0	0	0	444	1580	55	5	1220	5	AK7	14	96922763	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1016762	96922763	10426777	1163	43247											
AK7	122481	broad.mit.edu	37	chr14	96924383	96924383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatagcaaatggatgtgGggcatcatccaatgtgaata	12	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96924383	T	T	96924383	1	4	26	0	1	0	0	0	0	0	0	0	444	1247	43	2		2	AK7	14	96924383	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1620	96924383	10425157	1164	43248											
VRK1	7443	broad.mit.edu	37	chr14	97342551	97342551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactatttgggtcatgacCttttgattttataataaaat	5	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97342551	A	A	97342551	1	1	26	0	1	0	0	0	0	0	0	0	17346	696	24	2		2	VRK1	14	97342551	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	418168	97342551	10006989	1165	43249											
VRK1	7443	broad.mit.edu	37	chr14	97347468	97347468	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctgttcttttgcttttGtaaattattgactagtgatt	6	4	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97347468	T	T	97347468	1	4	26	0	1	0	0	0	0	0	0	0	17346	1392	48	3		3	VRK1	14	97347468	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4917	97347468	10002072	1166	43250											
C14orf177	283598	broad.mit.edu	37	chr14	99183529	99183529	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatcaccaaataatgtctgCttcgaccatctctgcatttt	4	11	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99183529	G	G	99183529	3	3	26	1	0	0	0	0	1	0	0	0	1773	797	28	4	302	4	C14orf177	14	99183529	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1836061	99183529	8166011	1167	43251											
YY1	7528	broad.mit.edu	37	chr14	100741126	100741126	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagagggagagtgttcattAaactgttgatgaagttttag	12	3	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100741126	G	G	100741126	1	3	26	0	1	0	0	0	0	0	0	0	17634	377	13	5		5	YY1	14	100741126	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1557597	100741126	6608414	1168	43252											
DIO3	1735	broad.mit.edu	37	chr14	102028399	102028399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtcactaagtaccagcGcgacgtcgacttcctcatca	8	15	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102028399	T	T	102028399	3	4	26	1	0	0	0	0	1	0	0	0	4566	1087	38	3	568	3	DIO3	14	102028399	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1287273	102028399	5321141	1169	43253											
RAGE	5891	broad.mit.edu	37	chr14	102718263	102718263	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagagcatacctgtgaataTgatccagggacttacataac	9	9	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102718263	A	A	102718263	3	1	26	1	0	0	0	0	1	0	0	0	13114	1464	51	5	938	5	RAGE	14	102718263	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	689864	102718263	4631277	1170	43254											
PACS2	23241	broad.mit.edu	37	chr14	105818726	105818726	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatcacagggctccaaacgAatcctgcggtcccatgagat	9	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105818726	G	G	105818726	2	3	26	1	0	0	0	0	0	0	0	1	11467	233	9	5		5	PACS2	14	105818726	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	3100463	105818726	1530814	1171	43255											
SNRPN	6638	broad.mit.edu	37	chr15	25222226	25222226	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggagaatatgactaagcCggaggccgaggagatttaaa	14	5	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25222226	T	T	25222226	1	4	26	0	1	0	0	0	0	0	0	0	14984	667	23	4		4	SNRPN	15	25222226	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08		25222226	77309166	1172	43256											
ATP10A	57194	broad.mit.edu	37	chr15	25981180	25981180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcaaacagaaggatgcgcGcaggcagacacacgatactc	10	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25981180	A	A	25981180	1	1	26	0	1	0	0	0	0	0	0	0	1120	1102	38	4		4	ATP10A	15	25981180	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	758954	25981180	76550212	1173	43257											
GABRB3	2562	broad.mit.edu	37	chr15	26793426	26793426	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatccagcactccgttttatTggaaaatgtcattttggagg	9	7	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26793426	A	A	26793426	1	1	26	0	1	0	0	0	0	0	0	0	6228	1827	63	5		5	GABRB3	15	26793426	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	812246	26793426	75737966	1174	43258											
GABRG3	2567	broad.mit.edu	37	chr15	27777780	27777780	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgaggccaccaccaaCtgcgatgatcactttaaaca	8	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27777780	T	T	27777780	3	4	26	1	0	0	0	0	1	0	0	0	6233	565	20	4	1195	4	GABRG3	15	27777780	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	984354	27777780	74753612	1175	43259											
APBA2	321	broad.mit.edu	37	chr15	29346679	29346679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctaccaggactactacCccgaggaggccaacgggaac	13	13	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29346679	A	A	29346679	3	1	26	1	0	0	0	0	1	0	0	0	759	623	22	2	594	2	APBA2	15	29346679	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1568899	29346679	73184713	1176	43260											
FAM189A1	23359	broad.mit.edu	37	chr15	29526433	29526433	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacgcttaactggtggttgTcgtaactcttctcttctctc	7	11	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29526433	C	C	29526433	1	2	26	0	1	0	0	0	0	0	0	0	5562	1682	58	5		5	FAM189A1	15	29526433	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	179754	29526433	73004959	1177	43261											
CHRNA7	1139	broad.mit.edu	37	chr15	32323090	32323090	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagccccctgcccgggtcttCtctccttaagtgtccctgca	9	17	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32323090	T	T	32323090	1	4	26	0	1	0	0	0	0	0	0	0	3419	928	32	4		4	CHRNA7	15	32323090	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2796657	32323090	70208302	1178	43262											
RYR3	6263	broad.mit.edu	37	chr15	34060759	34060759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctagaatgccactctgtGctctctgtttcacagtgtaa	7	12	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34060759	T	T	34060759	1	4	26	0	1	0	0	0	0	0	0	0	13881	1334	46	3		3	RYR3	15	34060759	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1737669	34060759	68470633	1179	43263											
RYR3	6263	broad.mit.edu	37	chr15	34093080	34093080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaacacatttgggccctGggtttagaatggttgtgaaa	12	5	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34093080	T	T	34093080	1	4	26	0	1	0	0	0	0	0	0	0	13881	1363	47	2		2	RYR3	15	34093080	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	32321	34093080	68438312	1180	43264											
C15orf24	56851	broad.mit.edu	37	chr15	34376527	34376527	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaaatgccagctctggaCggcctgactacctccttttg	10	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34376527	A	A	34376527	1	1	26	0	1	0	0	0	0	0	0	0	1799	551	19	3		3	C15orf24	15	34376527	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	283447	34376527	68154865	1181	43265											
MEIS2	4212	broad.mit.edu	37	chr15	37375946	37375946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagtcatgcctactttgCacgaggaaaatgtttgacct	8	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37375946	A	A	37375946	1	1	26	0	1	0	0	0	0	0	0	0	9561	725	25	3		3	MEIS2	15	37375946	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2999419	37375946	65155446	1182	43266											
MAPKBP1	23005	broad.mit.edu	37	chr15	42109706	42109706	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggacagggcggggtctgcCattccctgcctaaggttaca	14	12	1	0	rs111658566		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42109706	T	T	42109706	1	4	26	0	1	0	0	0	0	0	0	0	9384	609	21	4		4	MAPKBP1	15	42109706	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4733760	42109706	60421686	1183	43267											
VPS39	23339	broad.mit.edu	37	chr15	42470890	42470890	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtcccctagtcaaatatCaagccaggatcttacactgt	6	11	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42470890	A	A	42470890	1	1	26	0	1	0	0	0	0	0	0	0	17336	841	29	3		3	VPS39	15	42470890	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	361184	42470890	60060502	1184	43268											
SNAP23	8773	broad.mit.edu	37	chr15	42807601	42807601	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataagtaatgagagtacccCaccttctcccaccagctaag	6	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42807601	T	T	42807601	1	4	26	0	1	0	0	0	0	0	0	0	14943	609	21	4		4	SNAP23	15	42807601	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	336711	42807601	59723791	1185	43269											
SPG11	80208	broad.mit.edu	37	chr15	44905680	44905680	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actaaaaattcaaaccaaggGtgtgcttcatgtaactcttt	6	8	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44905680	C	C	44905680	3	2	26	1	0	0	0	0	1	0	0	0	15159	1252	44	4	4334	4	SPG11	15	44905680	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2098079	44905680	57625712	1186	43270											
DUOX2	50506	broad.mit.edu	37	chr15	45394261	45394261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtgcagggtggggcagGccccagattatctaatgtgg	17	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45394261	A	A	45394261	1	1	26	0	1	0	0	0	0	0	0	0	4841	1218	42	4		4	DUOX2	15	45394261	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	488581	45394261	57137131	1187	43271											
GATM	2628	broad.mit.edu	37	chr15	45660383	45660383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtactcaaagaagcgtgaaCgccatgccatgggagcctcg	13	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45660383	A	A	45660383	3	1	26	1	0	0	0	0	1	0	0	0	6325	536	19	3	735	3	GATM	15	45660383	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	266122	45660383	56871009	1188	43272											
SEMA6D	80031	broad.mit.edu	37	chr15	48057206	48057206	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaccagtcctttctctttGaacgacagcgtattactgga	8	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48057206	T	T	48057206	3	4	26	1	0	0	0	0	1	0	0	0	14155	1281	45	3	1426	3	SEMA6D	15	48057206	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2396823	48057206	54474186	1189	43273											
SLC24A5	283652	broad.mit.edu	37	chr15	48413344	48413344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggacctccctgccccaaCgtctcccaagggccacaggt	10	18	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48413344	A	A	48413344	3	1	26	1	0	0	0	0	1	0	0	0	14583	536	19	3	105	3	SLC24A5	15	48413344	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	356138	48413344	54118048	1190	43274											
SLC24A5	283652	broad.mit.edu	37	chr15	48426611	48426611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagttaacactaacttagCtggtactatcttgcacatag	6	9	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48426611	A	A	48426611	1	1	26	0	1	0	0	0	0	0	0	0	14583	812	28	3		3	SLC24A5	15	48426611	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	13267	48426611	54104781	1191	43275											
SLC12A1	6557	broad.mit.edu	37	chr15	48537080	48537080	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacatgaaccatgtcagtaCgggctgatgaacaatttcca	9	10	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48537080	A	A	48537080	4	1	26	1	0	0	0	0	0	1	0	0	14495	547	19	3	1569	3	SLC12A1	15	48537080	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	110469	48537080	53994312	1192	43276											
FBN1	2200	broad.mit.edu	37	chr15	48818226	48818226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtacattttacctcaGttgataaattatatgtgctc	5	6	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48818226	A	A	48818226	1	1	26	0	1	0	0	0	0	0	0	0	5759	1044	36	4		4	FBN1	15	48818226	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	281146	48818226	53713166	1193	43277											
SECISBP2L	9728	broad.mit.edu	37	chr15	49284799	49284799	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaagcatgccaggtacaAgagtgctggtggtgctggtg	15	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49284799	C	C	49284799	3	2	26	1	0	0	0	0	1	0	0	0	14120	72	3	5	361	5	SECISBP2L	15	49284799	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	466573	49284799	53246593	1194	43278											
SLC27A2	11001	broad.mit.edu	37	chr15	50519376	50519376	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagttggagatacattccgGttggtttttctgaatcattg	11	5	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50519376	A	A	50519376	5	1	26	1	0	0	0	0	0	0	1	0	14640	1275	44	4	1484	4	SLC27A2	15	50519376	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	1234577	50519376	52012016	1195	43279											
WDR72	256764	broad.mit.edu	37	chr15	54003555	54003555	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcagcagctgatagatgtAactgtgaccatcttctgtcc	9	10	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54003555	T	T	54003555	3	4	26	1	0	0	0	0	1	0	0	0	17449	362	13	5	2525	5	WDR72	15	54003555	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3484179	54003555	48527837	1196	43280											
NEDD4	4734	broad.mit.edu	37	chr15	56130693	56130694	+	Intron	INS	-	A	A													atgtgccattttaactgatcINSaaaattcacaaacctgtcca							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56130694	A	A	56130693	6	5	26	0	1	1	1	0	0	0	0	0	10405	841	29	0		0	NEDD4	15	56130693	Intron	INS	-	TCGA-05-4432-01A-01D-1265-08	2127138	56130693	46400699	1197	43281											
ADAM10	102	broad.mit.edu	37	chr15	58938103	58938103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactggtctttcagttatcCatgtacttatcttacacatt	4	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58938103	A	A	58938103	1	1	26	0	1	0	0	0	0	0	0	0	234	609	21	2		2	ADAM10	15	58938103	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2807410	58938103	43593289	1198	43282											
FOXB1	27023	broad.mit.edu	37	chr15	60297127	60297128	+	5'UTR	DNP	GC	TT	TT													tccgagcagtccgccggcccGcgcggacccagagcaagaag							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	60297128	TT	TT	60297127	1	4	26	0	1	0	0	0	0	0	0	0	6050	1102	38	3		3	FOXB1	15	60297127	5'UTR	DNP	GC	TCGA-05-4432-01A-01D-1265-08	1359024	60297127	42234265	1199	43283											
FAM96A	84191	broad.mit.edu	37	chr15	64385799	64385800	+	Intron	INS	-	CTGCA	CTGCA													ccgcacccctcagctccggcINSctgcacctataacgccaaat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTGCA	64385800	CTGCA	CTGCA	64385799	6	5	26	0	1	1	1	0	0	0	0	0	5711	754	26	0		0	FAM96A	15	64385799	Intron	INS	-	TCGA-05-4432-01A-01D-1265-08	4088672	64385799	38145593	1200	43284											
SNAPC5	10302	broad.mit.edu	37	chr15	66786523	66786529	+	Intron	DEL	CAGATTA	-	-													aacagttaactgaatctgacCagattacagacagcaccacc					rs112026486		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66786529	-	-	66786523	6	5	26	0	1	1	0	1	0	0	0	0	14952	609	21	0		0	SNAPC5	15	66786523	Intron	DEL	CAGATTA	TCGA-05-4432-01A-01D-1265-08	2400724	66786523	35744869	1201	43285											
HEXA	3073	broad.mit.edu	37	chr15	72638745	72638745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccaccttcccaatgtggCcctcaccccagctaagttgt	6	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72638745	T	T	72638745	1	4	26	0	1	0	0	0	0	0	0	0	7140	754	26	4		4	HEXA	15	72638745	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	5852222	72638745	29892647	1202	43286											
NPTN	27020	broad.mit.edu	37	chr15	73865937	73865937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctactacagtaactgacCcacgtgtctggacctctgca	8	14	2	1	rs111249561		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73865937	A	A	73865937	1	1	26	0	1	0	0	0	0	0	0	0	10696	638	22	2		2	NPTN	15	73865937	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1227192	73865937	28665455	1203	43287											
NPTN	27020	broad.mit.edu	37	chr15	73884560	73884560	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagttggacggggtaggaGggggaaactagaaaaagagg	20	2	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73884560	A	A	73884560	1	1	26	0	1	0	0	0	0	0	0	0	10696	1015	35	4		4	NPTN	15	73884560	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	18623	73884560	28646832	1204	43288											
TBC1D21	161514	broad.mit.edu	37	chr15	74178875	74178875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagggtgcaggggctgtGcagtccctcttcccctggtt	16	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74178875	T	T	74178875	2	4	26	1	0	0	0	0	0	0	0	1	15729	1306	46	3		3	TBC1D21	15	74178875	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	294315	74178875	28352517	1205	43289											
SCAMP5	192683	broad.mit.edu	37	chr15	75310808	75310808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgaacattggctcggcgGtggtgatgctaattcccact	12	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75310808	T	T	75310808	3	4	26	1	0	0	0	0	1	0	0	0	13986	1261	44	3	463	3	SCAMP5	15	75310808	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	1131933	75310808	27220584	1206	43290											
CSPG4	1464	broad.mit.edu	37	chr15	75982722	75982722	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggctctgtgtggtgagtgtAaactctagggttccttcgtc	13	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75982722	T	T	75982722	3	4	26	1	0	0	0	0	1	0	0	0	3994	359	13	5	6316	5	CSPG4	15	75982722	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	671914	75982722	26548670	1207	43291											
IREB2	3658	broad.mit.edu	37	chr15	78762866	78762866	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttaatgccagctcttcttCcttttagacctgaaacagtg	7	10	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78762866	T	T	78762866	1	4	26	0	1	0	0	0	0	0	0	0	7896	870	30	4		4	IREB2	15	78762866	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2780144	78762866	23768526	1208	43292											
AGPHD1	123688	broad.mit.edu	37	chr15	78805811	78805811	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccattacctatccagacacAtcactgcattttggccacaa	4	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78805811	C	C	78805811	1	2	26	0	1	0	0	0	0	0	0	0	393	232	8	5		5	AGPHD1	15	78805811	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	42945	78805811	23725581	1209	43293											
SLC28A1	9154	broad.mit.edu	37	chr15	85476167	85476167	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcctaacttagggagcacCaggaagaaatagaaggtcct	10	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85476167	T	T	85476167	1	4	26	0	1	0	0	0	0	0	0	0	14645	609	21	4		4	SLC28A1	15	85476167	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	6670356	85476167	17055225	1210	43294											
AGBL1	123624	broad.mit.edu	37	chr15	87531381	87531381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattgctggatgaaataccCtgcatgtgactacattggga	12	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87531381	A	A	87531381	1	1	26	0	1	0	0	0	0	0	0	0	375	696	24	2		2	AGBL1	15	87531381	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2055214	87531381	15000011	1211	43295											
NTRK3	4916	broad.mit.edu	37	chr15	88483995	88483995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcacatctgtaggatgGggacaaagaggagggcagca	16	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88483995	T	T	88483995	1	4	26	0	1	0	0	0	0	0	0	0	10803	1247	43	2		2	NTRK3	15	88483995	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	952614	88483995	14047397	1212	43296											
NTRK3	4916	broad.mit.edu	37	chr15	88726815	88726815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtgaggctaaggctggcCctgcagccgccctgtggatt	17	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88726815	A	A	88726815	1	1	26	0	1	0	0	0	0	0	0	0	10803	638	22	2		2	NTRK3	15	88726815	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	242820	88726815	13804577	1213	43297											
PGPEP1L	145814	broad.mit.edu	37	chr15	99512842	99512843	+	Missense_Mutation	DNP	CG	AA	AA													ccagactgttccagaatgatCgccttggcggcggtgtccat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	99512843	AA	AA	99512842	3	1	26	1	0	0	0	0	1	0	0	0	11899	871	31	3	415	3	PGPEP1L	15	99512842	Missense_Mutation	DNP	CG	TCGA-05-4432-01A-01D-1265-08	10786027	99512842	3018550	1214	43298											
ADAMTS17	170691	broad.mit.edu	37	chr15	100672099	100672099	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggctgggtttcattttccAtatcttctaatgctcagcgg	9	9	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100672099	G	G	100672099	1	3	26	0	1	0	0	0	0	0	0	0	262	232	8	5		5	ADAMTS17	15	100672099	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1159257	100672099	1859293	1215	43299											
LASS3	204219	broad.mit.edu	37	chr15	100942989	100942989	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttctttaaacaatccatctCtttgcctttggtagcctctt	5	11	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100942989	A	A	100942989	4	1	26	1	0	0	0	0	0	1	0	0	8712	922	32	3	74	3	LASS3	15	100942989	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	270890	100942989	1588403	1216	43300											
TPSAB1	7177	broad.mit.edu	37	chr16	1291632	1291632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacacggtcaccctgccccCtgcctcagagaccttccccc	6	23	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1291632	A	A	1291632	3	1	26	1	0	0	0	0	1	0	0	0	16547	681	24	2	441	2	TPSAB1	16	1291632	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08		1291632	89063121	1217	43301											
MEFV	4210	broad.mit.edu	37	chr16	3296480	3296480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggactgtctcccccatatgCtttctgcaagacaccccagg	9	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3296480	T	T	3296480	1	4	26	0	1	0	0	0	0	0	0	0	9552	812	28	4		4	MEFV	16	3296480	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2004848	3296480	87058273	1218	43302											
ZNF597	146434	broad.mit.edu	37	chr16	3493189	3493189	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccttcttcaagacgccacAgggacttcgtgacaaagctg	10	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3493189	T	T	3493189	1	4	26	0	1	0	0	0	0	0	0	0	18154	203	7	5		5	ZNF597	16	3493189	5'UTR	SNP	A	TCGA-05-4432-01A-01D-1265-08	196709	3493189	86861564	1219	43303											
MGRN1	23295	broad.mit.edu	37	chr16	4723304	4723304	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacagaccctccccctctgCcaggtgctgagtttgcactg	10	16	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4723304	T	T	4723304	1	4	26	0	1	0	0	0	0	0	0	0	9652	754	26	4		4	MGRN1	16	4723304	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1230115	4723304	85631449	1220	43304											
C16orf68	79091	broad.mit.edu	37	chr16	8735879	8735879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactgcaccgagctacccCcagccctgtttcttctcttg	6	19	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8735879	T	T	8735879	1	4	26	0	1	0	0	0	0	0	0	0	1841	638	22	4		4	C16orf68	16	8735879	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4012575	8735879	81618874	1221	43305											
NOMO1	23420	broad.mit.edu	37	chr16	14989374	14989374	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttctctcttttctagctcAttcctttgctgctgcagttg	6	12	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14989374	T	T	14989374	3	4	26	1	0	0	0	0	1	0	0	0	10626	217	8	5	3663	5	NOMO1	16	14989374	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	6253495	14989374	75365379	1222	43306											
PDXDC1	23042	broad.mit.edu	37	chr16	15222123	15222123	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccacacgctacccaggctgTgcggggtggcgatccggaag	15	13	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15222123	G	G	15222123	1	3	26	0	1	0	0	0	0	0	0	0	11790	1711	59	5		5	PDXDC1	16	15222123	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	232749	15222123	75132630	1223	43307											
MYH11	4629	broad.mit.edu	37	chr16	15894004	15894004	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatggatagatgagtagatgGatgggaggatggaagaagag	19	0	0	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15894004	A	A	15894004	1	1	26	0	1	0	0	0	0	0	0	0	10125	1189	41	4		4	MYH11	16	15894004	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	671881	15894004	74460749	1224	43308											
ABCC1	4363	broad.mit.edu	37	chr16	16225547	16225547	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaggcctgggaggccaCcttgggcagcagagtgagtg	18	9	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16225547	T	T	16225547	1	4	26	0	1	0	0	0	0	0	0	0	49	522	18	4		4	ABCC1	16	16225547	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	331543	16225547	74129206	1225	43309											
XYLT1	64131	broad.mit.edu	37	chr16	17353089	17353089	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggctgctgttggctgcGgctctgtccccgggaggcag	17	13	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17353089	T	T	17353089	2	4	26	1	0	0	0	0	0	0	0	1	17590	1103	39	1		1	XYLT1	16	17353089	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1127542	17353089	73001664	1226	43310											
SMG1	23049	broad.mit.edu	37	chr16	18882704	18882704	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgttggctaaaaggccttTgcaaaatttatggaaagacg	10	6	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18882704	C	C	18882704	3	2	26	1	0	0	0	0	1	0	0	0	14909	1821	63	5	8893	5	SMG1	16	18882704	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	1529615	18882704	71472049	1227	43311											
CHP2	63928	broad.mit.edu	37	chr16	23767579	23767579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccagggacaggctccagGgatctcccactcccttcctg	9	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23767579	T	T	23767579	1	4	26	0	1	0	0	0	0	0	0	0	3398	1247	43	2		2	CHP2	16	23767579	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4884875	23767579	66587174	1228	43312											
SLC5A11	115584	broad.mit.edu	37	chr16	24909338	24909338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagaacctgtcccatgCcaaaggaggtgctctgatgg	12	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24909338	A	A	24909338	3	1	26	1	0	0	0	0	1	0	0	0	14777	739	26	3	948	3	SLC5A11	16	24909338	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1141759	24909338	65445415	1229	43313											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25268633	25268633	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcccttgaaaaggtgaaCgtatactctaagatgcaaaa	9	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25268633	A	A	25268633	1	1	26	0	1	0	0	0	0	0	0	0	17813	551	19	3		3	ZKSCAN2	16	25268633	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	359295	25268633	65086120	1230	43314											
IL21R	50615	broad.mit.edu	37	chr16	27460216	27460216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggatgctggcctggagcCcagcccaggcctagaggacc	14	15	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27460216	A	A	27460216	3	1	26	1	0	0	0	0	1	0	0	0	7741	623	22	2	1259	2	IL21R	16	27460216	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2191583	27460216	62894537	1231	43315											
KIAA0556	23247	broad.mit.edu	37	chr16	27789146	27789146	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccctaaggaggatggatgGctgggacacacggccaggag	17	9	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27789146	C	C	27789146	1	2	26	0	1	0	0	0	0	0	0	0	8253	1218	42	4		4	KIAA0556	16	27789146	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	328930	27789146	62565607	1232	43316											
CLN3	1201	broad.mit.edu	37	chr16	28488912	28488912	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatccccagtgtgtcagaGatgcaggtggccgccattgc	14	11	1	2	rs1064886		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28488912	T	T	28488912	2	4	26	1	0	0	0	0	0	0	0	1	3575	932	33	3		3	CLN3	16	28488912	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	699766	28488912	61865841	1233	43317											
FAM57B	83723	broad.mit.edu	37	chr16	30041747	30041747	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagacaatgactgcgtcGgcctcctcccagcgtagctg	12	14	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30041747	A	A	30041747	2	1	26	1	0	0	0	0	0	0	0	1	5640	1103	39	4		4	FAM57B	16	30041747	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1552835	30041747	60313006	1234	43318											
PRSS36	146547	broad.mit.edu	37	chr16	31155184	31155184	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagatgactgcatgtcaaGgggtcagcccagggacctac	14	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31155184	C	C	31155184	1	2	26	0	1	0	0	0	0	0	0	0	12731	1015	35	4		4	PRSS36	16	31155184	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1113437	31155184	59199569	1235	43319											
ITGAX	3687	broad.mit.edu	37	chr16	31368274	31368274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctccttgtctcccaggtGgaggtgacccctgcccagct	11	16	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31368274	T	T	31368274	1	4	26	0	1	0	0	0	0	0	0	0	7959	1363	47	2		2	ITGAX	16	31368274	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	213090	31368274	58986479	1236	43320											
ITGAD	3681	broad.mit.edu	37	chr16	31422370	31422370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctctggctgggacaggCagcatgacccaggctctgcc	13	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422370	A	A	31422370	1	1	26	0	1	0	0	0	0	0	0	0	7954	725	25	3		3	ITGAD	16	31422370	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	54096	31422370	58932383	1237	43321											
LONP2	83752	broad.mit.edu	37	chr16	48304127	48304127	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggccaagactctaggtcgaGagttccacaggattgcactt	11	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48304127	T	T	48304127	4	4	26	1	0	0	0	0	0	1	0	0	8980	943	33	3	1209	3	LONP2	16	48304127	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	16881757	48304127	42050626	1238	43322											
NOD2	64127	broad.mit.edu	37	chr16	50756678	50756678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaagagggaggagctgGggccagttctgaaggtcttt	18	5	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50756678	T	T	50756678	1	4	26	0	1	0	0	0	0	0	0	0	10612	1247	43	2		2	NOD2	16	50756678	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2452551	50756678	39598075	1239	43323											
SALL1	6299	broad.mit.edu	37	chr16	51174718	51174718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgaatggcctctctccgGtatgggaacgcaagtggatc	12	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51174718	T	T	51174718	3	4	26	1	0	0	0	0	1	0	0	0	13921	1261	44	3	2567	3	SALL1	16	51174718	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	418040	51174718	39180035	1240	43324											
SALL1	6299	broad.mit.edu	37	chr16	51175401	51175401	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgaatctgttcgatcaattgCagctggtggatctgctgctg	12	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51175401	G	G	51175401	2	3	26	1	0	0	0	0	0	0	0	1	13921	697	25	4		4	SALL1	16	51175401	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	683	51175401	39179352	1241	43325											
CHD9	80205	broad.mit.edu	37	chr16	53338272	53338272	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaactccaaacccagcttcTaagaaaccaagagtccacaa	4	14	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53338272	G	G	53338272	2	3	26	1	0	0	0	0	0	0	0	1	3363	1509	53	5		5	CHD9	16	53338272	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	2162871	53338272	37016481	1242	43326											
IRX6	79190	broad.mit.edu	37	chr16	55360341	55360341	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctccaccccagcgcccgctCtctgctgcgcaccctacgat	8	21	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55360341	T	T	55360341	3	4	26	1	0	0	0	0	1	0	0	0	7918	913	32	4	145	4	IRX6	16	55360341	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2022069	55360341	34994412	1243	43327											
CES7	221223	broad.mit.edu	37	chr16	55883641	55883641	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcgtgtcttcaaagcactGaggccggtgccgaaactcat	10	12	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55883641	T	T	55883641	3	4	26	1	0	0	0	0	1	0	0	0	3302	1299	45	3	421	3	CES7	16	55883641	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	523300	55883641	34471112	1244	43328											
AMFR	267	broad.mit.edu	37	chr16	56401630	56401630	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagcctggggcctaacCtagagttccaagtttgagag	13	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56401630	T	T	56401630	1	4	26	0	1	0	0	0	0	0	0	0	571	696	24	4		4	AMFR	16	56401630	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	517989	56401630	33953123	1245	43329											
SLC12A3	6559	broad.mit.edu	37	chr16	56906186	56906186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagaaacgggccctgggCaaatcattttctggcggggc	15	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56906186	A	A	56906186	1	1	26	0	1	0	0	0	0	0	0	0	14497	725	25	3		3	SLC12A3	16	56906186	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	504556	56906186	33448567	1246	43330											
CCL22	6367	broad.mit.edu	37	chr16	57394572	57394572	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gacacacccagggatgagagGaatgtggcagggctaccaga	15	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57394572	C	C	57394572	1	2	26	0	1	0	0	0	0	0	0	0	2922	1189	41	4		4	CCL22	16	57394572	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	488386	57394572	32960181	1247	43331											
CCDC135	84229	broad.mit.edu	37	chr16	57765053	57765053	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctttgtaacccctcaccctCtttccttgcctctctgactt	4	17	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57765053	A	A	57765053	1	1	26	0	1	0	0	0	0	0	0	0	2795	928	32	3		3	CCDC135	16	57765053	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	370481	57765053	32589700	1248	43332											
KATNB1	10300	broad.mit.edu	37	chr16	57790064	57790064	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccatgggaaggacccccaAgagcctgggtgttcctgtga	13	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57790064	G	G	57790064	1	3	26	0	1	0	0	0	0	0	0	0	8057	87	3	5		5	KATNB1	16	57790064	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	25011	57790064	32564689	1249	43333											
CDH11	1009	broad.mit.edu	37	chr16	64984878	64984878	+	Frame_Shift_Del	DEL	C	-	-													aggtacaagtcctgcttctgCcgactgaaccctccacgccg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64984878	-	-	64984878	7	5	26	1	0	1	0	1	0	0	0	0	3127	726	26	0	712	0	CDH11	16	64984878	Frame_Shift_Del	DEL	C	TCGA-05-4432-01A-01D-1265-08	7194814	64984878	25369875	1250	43334											
PSKH1	5681	broad.mit.edu	37	chr16	67961108	67961108	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggggaggccccaagtgctAcatgagaggaggggcagcac	18	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67961108	G	G	67961108	1	3	26	0	1	0	0	0	0	0	0	0	12770	406	14	5		5	PSKH1	16	67961108	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2976230	67961108	22393645	1251	43335											
COG4	25839	broad.mit.edu	37	chr16	70543061	70543061	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttttcactttttcaaacCctacaatttattctactcag	1	10	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70543061	T	T	70543061	1	4	26	0	1	0	0	0	0	0	0	0	3692	638	22	4		4	COG4	16	70543061	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2581953	70543061	19811692	1252	43336											
CALB2	794	broad.mit.edu	37	chr16	71418849	71418849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggggtggcctgggccGtgtggtttcttcctgccgca	15	12	1	0	rs143336859	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71418849	T	T	71418849	1	4	26	0	1	0	0	0	0	0	0	0	2600	1160	40	3		3	CALB2	16	71418849	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	875788	71418849	18935904	1253	43337											
HPR	3250	broad.mit.edu	37	chr16	72110394	72110394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaccattcagaaaatgCaacagcgaaagacattgccc	7	12	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72110394	A	A	72110394	3	1	26	1	0	0	0	0	1	0	0	0	7404	710	25	3	479	3	HPR	16	72110394	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	691545	72110394	18244359	1254	43338											
IRF8	3394	broad.mit.edu	37	chr16	85948000	85948000	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagccttttaagggactttTggagaaggagcgattggggt	16	5	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85948000	C	C	85948000	1	2	26	0	1	0	0	0	0	0	0	0	7906	1827	63	5		5	IRF8	16	85948000	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	13837606	85948000	4406753	1255	43339											
JPH3	57338	broad.mit.edu	37	chr16	87678356	87678356	+	Frame_Shift_Del	DEL	G	-	-													cgagacctacgtgggcgagtGgaagaacgacaaacgctccg							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87678356	-	-	87678356	7	5	26	1	0	1	0	1	0	0	0	0	8032	1357	47	0	881	0	JPH3	16	87678356	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	1730356	87678356	2676397	1256	43340											
KLHDC4	54758	broad.mit.edu	37	chr16	87742853	87742853	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctcccgggcacggaggcaCcaagctgcctggctcacctg	13	17	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87742853	G	G	87742853	1	3	26	0	1	0	0	0	0	0	0	0	8429	522	18	4		4	KLHDC4	16	87742853	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	64497	87742853	2611900	1257	43341											
SPATA2L	124044	broad.mit.edu	37	chr16	89764600	89764600	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggcggggggcagggcggtCaccatgagccgatggctgtc	19	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89764600	A	A	89764600	2	1	26	1	0	0	0	0	0	0	0	1	15125	813	29	3		3	SPATA2L	16	89764600	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2021747	89764600	590153	1258	43342											
PRPF8	10594	broad.mit.edu	37	chr17	1557163	1557163	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgccatgcttgttgacagtGcgagtctgtgttgccgtcag	13	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1557163	A	A	1557163	2	1	26	1	0	0	0	0	0	0	0	1	12681	1306	46	4		4	PRPF8	17	1557163	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08		1557163	79638047	1259	43343											
SPATA22	84690	broad.mit.edu	37	chr17	3366057	3366057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattcacagcttcccaggcCcaatctcaaaagatataagt	7	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3366057	A	A	3366057	3	1	26	1	0	0	0	0	1	0	0	0	15124	624	22	2	938	2	SPATA22	17	3366057	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1808894	3366057	77829153	1260	43344											
SPATA22	84690	broad.mit.edu	37	chr17	3386775	3386776	+	Intron	INS	-	TT	TT													gtttttacctaagaaagacgINStttttgatttttttcagact							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	3386776	TT	TT	3386775	6	5	26	0	1	1	1	0	0	0	0	0	15124	1160	40	0		0	SPATA22	17	3386775	Intron	INS	-	TCGA-05-4432-01A-01D-1265-08	20718	3386775	77808435	1261	43345											
ITGAE	3682	broad.mit.edu	37	chr17	3638335	3638335	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcaccgaggctagagcgtGgtgctgtggtgcaatgatca	14	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3638335	A	A	3638335	1	1	26	0	1	0	0	0	0	0	0	0	7955	1363	47	4		4	ITGAE	17	3638335	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	251560	3638335	77556875	1262	43346											
C17orf85	55421	broad.mit.edu	37	chr17	3724725	3724725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactatttctttctcttttcTtttttttttgtgatggagtc	5	7	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3724725	C	C	3724725	1	2	26	0	1	0	0	0	0	0	0	0	1905	1624	56	5		5	C17orf85	17	3724725	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	86390	3724725	77470485	1263	43347											
ATP2A3	489	broad.mit.edu	37	chr17	3831506	3831506	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaccctccccttgacccaCccacaaggtgataccaaaga	5	17	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3831506	T	T	3831506	1	4	26	0	1	0	0	0	0	0	0	0	1142	522	18	4		4	ATP2A3	17	3831506	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	106781	3831506	77363704	1264	43348											
ZMYND15	84225	broad.mit.edu	37	chr17	4647436	4647436	+	Intron	DEL	G	-	-													agtggggggtggagcaggatGggggagtgagagtggaccac							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4647436	-	-	4647436	6	5	26	0	1	1	0	1	0	0	0	0	17834	1363	47	0		0	ZMYND15	17	4647436	Intron	DEL	G	TCGA-05-4432-01A-01D-1265-08	815930	4647436	76547774	1265	43349											
SPAG7	9552	broad.mit.edu	37	chr17	4863846	4863846	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacctccttctccatcttGggagaggggaaaggaagcag	13	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4863846	A	A	4863846	1	1	26	0	1	0	0	0	0	0	0	0	15099	1363	47	4		4	SPAG7	17	4863846	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	216410	4863846	76331364	1266	43350											
KIF1C	10749	broad.mit.edu	37	chr17	4916934	4916934	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctccccctgaccacctttCtctccccgcttagactcccc	5	22	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4916934	T	T	4916934	1	4	26	0	1	0	0	0	0	0	0	0	8355	928	32	4		4	KIF1C	17	4916934	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	53088	4916934	76278276	1267	43351											
USP6	9098	broad.mit.edu	37	chr17	5035824	5035824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctggcctgggcggtggCgggtgagggcaacacgctgt	20	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5035824	A	A	5035824	1	1	26	0	1	0	0	0	0	0	0	0	17213	783	27	3		3	USP6	17	5035824	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	118890	5035824	76159386	1268	43352											
CLEC10A	10462	broad.mit.edu	37	chr17	6981535	6981535	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggagggctgggcacagggGactccaggggagggttggac	22	7	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6981535	C	C	6981535	1	2	26	0	1	0	0	0	0	0	0	0	3527	1189	41	4		4	CLEC10A	17	6981535	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1945711	6981535	74213675	1269	43353											
DLG4	1742	broad.mit.edu	37	chr17	7097767	7097767	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagcggaagctcagggccTggctcaggaagccgcagtcc	14	13	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7097767	A	A	7097767	3	1	26	1	0	0	0	0	1	0	0	0	4597	1580	55	5	861	5	DLG4	17	7097767	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	116232	7097767	74097443	1270	43354											
ACADVL	37	broad.mit.edu	37	chr17	7125754	7125754	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatgtggcctttgggacTaatatgtatgcaactgagct	11	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7125754	C	C	7125754	1	2	26	0	1	0	0	0	0	0	0	0	116	1537	53	5		5	ACADVL	17	7125754	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	27987	7125754	74069456	1271	43355											
TP53	7157	broad.mit.edu	37	chr17	7574003	7574003	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggcctcattcagctctcGgaacatctcgaagcgctcac	8	15	5	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7574003	A	A	7574003	4	1	26	1	0	0	0	0	0	1	0	0	16505	1124	39	4	165	4	TP53	17	7574003	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	448249	7574003	73621207	1272	43356											
TP53	7157	broad.mit.edu	37	chr17	7577095	7577095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttcctctgtgcgccgGtctctcccaggacaggcaca	9	16	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577095	T	T	7577095	3	4	26	1	0	0	0	0	1	0	0	0	16505	1252	44	3	443	3	TP53	17	7577095	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3092	7577095	73618115	1273	43357											
CHD3	1107	broad.mit.edu	37	chr17	7797428	7797428	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacggccacggggctatgGgcagtatgtttttcagagcg	15	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7797428	A	A	7797428	1	1	26	0	1	0	0	0	0	0	0	0	3357	1247	43	4		4	CHD3	17	7797428	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	220333	7797428	73397782	1274	43358											
TMEM107	84314	broad.mit.edu	37	chr17	8079332	8079332	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagaggcaggcaggcctGtatgttgctgtcctgggagc	17	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8079332	A	A	8079332	4	1	26	1	0	0	0	0	0	1	0	0	16146	1386	48	4	356	4	TMEM107	17	8079332	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	281904	8079332	73115878	1275	43359											
MYH10	4628	broad.mit.edu	37	chr17	8464929	8464929	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagactgaagacagactatTctctggagaaaaataaaatg	8	5	1	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8464929	G	G	8464929	1	3	26	0	1	0	0	0	0	0	0	0	10124	1798	62	5		5	MYH10	17	8464929	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	385597	8464929	72730281	1276	43360											
PIK3R5	23533	broad.mit.edu	37	chr17	8792280	8792280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatattccctttggaggGgagacagcaggactcagggc	13	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8792280	T	T	8792280	1	4	26	0	1	0	0	0	0	0	0	0	12017	1247	43	2		2	PIK3R5	17	8792280	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	327351	8792280	72402930	1277	43361											
WDR16	146845	broad.mit.edu	37	chr17	9503448	9503448	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatattctaaaaatgaaccCcaggactaaactgctgacag	7	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9503448	G	G	9503448	3	3	26	1	0	0	0	0	1	0	0	0	17403	623	22	4	723	4	WDR16	17	9503448	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	711168	9503448	71691762	1278	43362											
GAS7	8522	broad.mit.edu	37	chr17	9820477	9820477	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggggggcatccactcgGcatgggccccatggtgggag	20	10	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9820477	T	T	9820477	1	4	26	0	1	0	0	0	0	0	0	0	6312	1218	42	3		3	GAS7	17	9820477	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	317029	9820477	71374733	1279	43363											
MYH13	8735	broad.mit.edu	37	chr17	10243518	10243518	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgtacaaagtgagggtgggTgctccttaagttagtcatca	12	7	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10243518	A	A	10243518	3	1	26	1	0	0	0	0	1	0	0	0	10126	1696	59	5	3907	5	MYH13	17	10243518	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	423041	10243518	70951692	1280	43364											
MYH13	8735	broad.mit.edu	37	chr17	10265370	10265370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattcagatggccaacgccCatcaaaagcttgaaaaatta	6	11	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10265370	A	A	10265370	1	1	26	0	1	0	0	0	0	0	0	0	10126	609	21	2		2	MYH13	17	10265370	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	21852	10265370	70929840	1281	43365											
MYH8	4626	broad.mit.edu	37	chr17	10316057	10316057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagcgactgcagagacaCagttcaggacatgttgtttc	11	9	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10316057	A	A	10316057	1	1	26	0	1	0	0	0	0	0	0	0	10135	493	17	3		3	MYH8	17	10316057	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	50687	10316057	70879153	1282	43366											
MYH2	4620	broad.mit.edu	37	chr17	10432238	10432238	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaactcagcctcccgcttCttgttcatctcaatctgggc	8	14	5	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10432238	T	T	10432238	2	4	26	1	0	0	0	0	0	0	0	1	10129	912	32	4		4	MYH2	17	10432238	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	116181	10432238	70762972	1283	43367											
MYH3	4621	broad.mit.edu	37	chr17	10558331	10558331	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctccttttctgacttccgGaggaaaggagcagctatgcc	10	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10558331	A	A	10558331	2	1	26	1	0	0	0	0	0	0	0	1	10130	1161	41	4		4	MYH3	17	10558331	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	126093	10558331	70636879	1284	43368											
MYOCD	93649	broad.mit.edu	37	chr17	12666523	12666523	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagcctcttcaggcagccaGatcccctttgatccctatgc	7	16	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12666523	T	T	12666523	3	4	26	1	0	0	0	0	1	0	0	0	10181	933	33	3	2589	3	MYOCD	17	12666523	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2108192	12666523	68528687	1285	43369											
FAM18B2	201158	broad.mit.edu	37	chr17	15406280	15406280	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggcccaaagccgcaaggaGagaaataggcgggcgggcgc	17	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15406280	A	A	15406280	2	1	26	1	0	0	0	0	0	0	0	1	5567	929	33	4		4	FAM18B2	17	15406280	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	2739757	15406280	65788930	1286	43370											
TRPV2	51393	broad.mit.edu	37	chr17	16326837	16326837	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgggatgtggtaagctAcctcctggagaacccacacc	12	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16326837	G	G	16326837	3	3	26	1	0	0	0	0	1	0	0	0	16721	391	14	5	694	5	TRPV2	17	16326837	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	920557	16326837	64868373	1287	43371											
TRPV2	51393	broad.mit.edu	37	chr17	16331614	16331614	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggtttcacagccctctgtCctcccttcctccgcagctgt	7	18	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16331614	T	T	16331614	1	4	26	0	1	0	0	0	0	0	0	0	16721	870	30	4		4	TRPV2	17	16331614	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4777	16331614	64863596	1288	43372											
MYO15A	51168	broad.mit.edu	37	chr17	18062439	18062439	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcaccctgattccctcCcaaggacagcctctgtcccc	6	20	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18062439	T	T	18062439	1	4	26	0	1	0	0	0	0	0	0	0	10157	638	22	4		4	MYO15A	17	18062439	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1730825	18062439	63132771	1289	43373											
FBXW10	10517	broad.mit.edu	37	chr17	18682202	18682202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgattatccgctccaGgttctctggcagcttaaagg	10	12	1	1	rs149783676	byFrequency	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18682202	T	T	18682202	3	4	26	1	0	0	0	0	1	0	0	0	5820	1000	35	2	2801	2	FBXW10	17	18682202	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	619763	18682202	62513008	1290	43374											
SLC13A2	9058	broad.mit.edu	37	chr17	26820598	26820598	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgcctgcagcttccggaaGaactttggcattggggaaaa	12	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26820598	T	T	26820598	3	4	26	1	0	0	0	0	1	0	0	0	14505	933	33	3	1061	3	SLC13A2	17	26820598	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	8138396	26820598	54374612	1291	43375											
UNC119	9094	broad.mit.edu	37	chr17	26875598	26875598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccatcaatggcccaccCagcccactcacctgagactg	6	20	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26875598	A	A	26875598	1	1	26	0	1	0	0	0	0	0	0	0	17108	609	21	2		2	UNC119	17	26875598	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	55000	26875598	54319612	1292	43376											
RPL23A	6147	broad.mit.edu	37	chr17	27050643	27050643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgattacgatgctttGgatgttgccaacaaagtaag	10	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27050643	T	T	27050643	3	4	26	1	0	0	0	0	1	0	0	0	13682	1339	47	2	455	2	RPL23A	17	27050643	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	175045	27050643	54144567	1293	43377											
PIPOX	51268	broad.mit.edu	37	chr17	27370472	27370472	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagggactgaatcatcaAaaattctgtgtaatttgtat	7	6	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27370472	G	G	27370472	1	3	26	0	1	0	0	0	0	0	0	0	12038	29	1	5		5	PIPOX	17	27370472	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	319829	27370472	53824738	1294	43378											
MYO18A	399687	broad.mit.edu	37	chr17	27426587	27426587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcccccttatagccccCaccccaggaacttggctgtg	7	18	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27426587	T	T	27426587	1	4	26	0	1	0	0	0	0	0	0	0	10159	609	21	4		4	MYO18A	17	27426587	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	56115	27426587	53768623	1295	43379											
SSH2	85464	broad.mit.edu	37	chr17	28004802	28004802	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagttactccccattactcTgggaagcagtcttctgttta	7	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28004802	C	C	28004802	1	2	26	0	1	0	0	0	0	0	0	0	15303	1595	55	5		5	SSH2	17	28004802	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	578215	28004802	53190408	1296	43380											
ACCN1	40	broad.mit.edu	37	chr17	32366548	32366548	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcggtaagggattggataagGaatgttgcagtgaggatcgt	17	3	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32366548	T	T	32366548	1	4	26	0	1	0	0	0	0	0	0	0	128	1189	41	3		3	ACCN1	17	32366548	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4361746	32366548	48828662	1297	43381											
AMAC1	146861	broad.mit.edu	37	chr17	33521019	33521019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcacagaagaaggccCggcttcggatgtcaggagtt	16	9	1	2	rs148354465		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33521019	A	A	33521019	3	1	26	1	0	0	0	0	1	0	0	0	559	652	23	1	712	1	AMAC1	17	33521019	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1154471	33521019	47674191	1298	43382											
GAS2L2	246176	broad.mit.edu	37	chr17	34079564	34079564	+	Frame_Shift_Del	DEL	G	-	-													tggaaggtacctggctgggcGgccccattgcaggagacccc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34079564	-	-	34079564	7	5	26	1	0	1	0	1	0	0	0	0	6309	1103	39	0	2360	0	GAS2L2	17	34079564	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	558545	34079564	47115646	1299	43383											
GGNBP2	79893	broad.mit.edu	37	chr17	34913229	34913229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaaatttaaaacagcttGgtgacagtggcagcttattt	9	5	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34913229	T	T	34913229	1	4	26	0	1	0	0	0	0	0	0	0	6423	1363	47	2		2	GGNBP2	17	34913229	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	833665	34913229	46281981	1300	43384											
ACACA	31	broad.mit.edu	37	chr17	35615290	35615290	+	Frame_Shift_Del	DEL	G	-	-													ctatatagaggaatccccatGgcaatctgaaaggtaataaa							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35615290	-	-	35615290	7	5	26	1	0	1	0	1	0	0	0	0	106	1335	47	0	5821	0	ACACA	17	35615290	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	702061	35615290	45579920	1301	43385											
MRPL45	84311	broad.mit.edu	37	chr17	36476417	36476417	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgttggctgtagtctTgcaggaagtgagagcagtgt	15	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36476417	A	A	36476417	1	1	26	0	1	0	0	0	0	0	0	0	9903	1827	63	5		5	MRPL45	17	36476417	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	861127	36476417	44718793	1302	43386											
GPR179	440435	broad.mit.edu	37	chr17	36499029	36499029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatatccatctgcctgcGgccacttggggctgccgagg	12	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36499029	T	T	36499029	3	4	26	1	0	0	0	0	1	0	0	0	6739	1116	39	1	6503	1	GPR179	17	36499029	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	22612	36499029	44696181	1303	43387											
SRCIN1	80725	broad.mit.edu	37	chr17	36708820	36708820	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatcttgctctgcaggccCgggaagtgagctgaggagac	15	11	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36708820	A	A	36708820	2	1	26	1	0	0	0	0	0	0	0	1	15254	639	23	1		1	SRCIN1	17	36708820	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	209791	36708820	44486390	1304	43388											
ORMDL3	94103	broad.mit.edu	37	chr17	38078941	38078941	+	Intron	DEL	G	-	-													aagctggtgaggaagtacctGggaggggaagggtggggaga							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38078941	-	-	38078941	6	5	26	0	1	1	0	1	0	0	0	0	11365	1363	47	0		0	ORMDL3	17	38078941	Intron	DEL	G	TCGA-05-4432-01A-01D-1265-08	1370121	38078941	43116269	1305	43389											
ORMDL3	94103	broad.mit.edu	37	chr17	38078966	38078966	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaagggtggggagagataTaaaagactgttgggaggacc	19	3	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38078966	C	C	38078966	1	2	26	0	1	0	0	0	0	0	0	0	11365	1421	49	5		5	ORMDL3	17	38078966	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	25	38078966	43116244	1306	43390											
JUP	3728	broad.mit.edu	37	chr17	39742499	39742499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaggtctcaggggcctgGggcatgaattgttcccagaa	13	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39742499	T	T	39742499	1	4	26	0	1	0	0	0	0	0	0	0	8042	1247	43	2		2	JUP	17	39742499	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1663533	39742499	41452711	1307	43391											
ACLY	47	broad.mit.edu	37	chr17	40063719	40063719	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatatgcctcccgcccgaaGgggggagggaactcgatgtc	16	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40063719	A	A	40063719	2	1	26	1	0	0	0	0	0	0	0	1	143	987	35	4		4	ACLY	17	40063719	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	321220	40063719	41131491	1308	43392											
CD300LG	146894	broad.mit.edu	37	chr17	41939154	41939154	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctctccaaaccccactgTtgtctttacagactgcggag	8	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41939154	C	C	41939154	1	2	26	0	1	0	0	0	0	0	0	0	3032	1740	60	5		5	CD300LG	17	41939154	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1875435	41939154	39256056	1309	43393											
DBF4B	80174	broad.mit.edu	37	chr17	42828116	42828116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgcctctgtccctgccCagcctcctttacccagtctc	8	19	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42828116	A	A	42828116	3	1	26	1	0	0	0	0	1	0	0	0	4282	594	21	2	1442	2	DBF4B	17	42828116	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	888962	42828116	38367094	1310	43394											
GFAP	2670	broad.mit.edu	37	chr17	42987730	42987730	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgtcaagctctcacccaGttctgctgtcgaatggggtg	12	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42987730	C	C	42987730	1	2	26	0	1	0	0	0	0	0	0	0	6401	1044	36	4		4	GFAP	17	42987730	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	159614	42987730	38207480	1311	43395											
TBKBP1	9755	broad.mit.edu	37	chr17	45776160	45776160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgagatctcagtgacccCgacttacctcctagtcccca	8	15	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45776160	A	A	45776160	1	1	26	0	1	0	0	0	0	0	0	0	15760	667	23	1		1	TBKBP1	17	45776160	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2788430	45776160	35419050	1312	43396											
HOXB3	3213	broad.mit.edu	37	chr17	46628126	46628126	+	Frame_Shift_Del	DEL	G	-	-													taccgaaggcgggtggggacGggctctcgtagctgggggtc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46628126	-	-	46628126	7	5	26	1	0	1	0	1	0	0	0	0	7369	1116	39	0	433	0	HOXB3	17	46628126	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	851966	46628126	34567084	1313	43397											
IGF2BP1	10642	broad.mit.edu	37	chr17	47075138	47075138	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttacatcggcaacctcaacGagagcgtgacccccgcggac	10	15	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47075138	A	A	47075138	3	1	26	1	0	0	0	0	1	0	0	0	7643	1059	37	4	33	4	IGF2BP1	17	47075138	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	447012	47075138	34120072	1314	43398											
SPAG9	9043	broad.mit.edu	37	chr17	49072464	49072464	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aactactctgagaggcacttCgctgtttactgccttctgta	8	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49072464	G	G	49072464	3	3	26	1	0	0	0	0	1	0	0	0	15101	884	31	4	1837	4	SPAG9	17	49072464	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1997326	49072464	32122746	1315	43399											
UTP18	51096	broad.mit.edu	37	chr17	49362423	49362423	+	Intron	DEL	A	-	-													caagagaaaaactgcatctcAaaaaaaaaaaaaggaaaaaa					rs77002893		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49362423	-	-	49362423	6	5	26	0	1	1	0	1	0	0	0	0	17225	145	5	0		0	UTP18	17	49362423	Intron	DEL	A	TCGA-05-4432-01A-01D-1265-08	289959	49362423	31832787	1316	43400											
C17orf67	339210	broad.mit.edu	37	chr17	54892331	54892331	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcaaaatcggggaggtctCtggaaaagtcgggaaggtgc	16	6	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54892331	T	T	54892331	5	4	26	1	0	0	0	0	0	0	1	0	1891	927	32	4	225	4	C17orf67	17	54892331	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	5529908	54892331	26302879	1317	43401											
AKAP1	8165	broad.mit.edu	37	chr17	55190108	55190108	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcgccctctcttctctgGcctctgctggtcggttctgc	10	17	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55190108	A	A	55190108	1	1	26	0	1	0	0	0	0	0	0	0	445	1218	42	4		4	AKAP1	17	55190108	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	297777	55190108	26005102	1318	43402											
MSI2	124540	broad.mit.edu	37	chr17	55752274	55752274	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagctctattctctgcacAccagtcctgaatagctacag	6	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55752274	C	C	55752274	1	2	26	0	1	0	0	0	0	0	0	0	9970	174	6	5		5	MSI2	17	55752274	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	562166	55752274	25442936	1319	43403											
BZRAP1	9256	broad.mit.edu	37	chr17	56395576	56395576	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaccccagaagaggtcagGgccacctgccctgcaccctt	12	16	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56395576	A	A	56395576	1	1	26	0	1	0	0	0	0	0	0	0	1587	1247	43	4		4	BZRAP1	17	56395576	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	643302	56395576	24799634	1320	43404											
MTMR4	9110	broad.mit.edu	37	chr17	56570406	56570406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctaagtgcattacacaCatgaacttatttcttatgac	6	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56570406	A	A	56570406	1	1	26	0	1	0	0	0	0	0	0	0	10040	493	17	3		3	MTMR4	17	56570406	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	174830	56570406	24624804	1321	43405											
USP32	84669	broad.mit.edu	37	chr17	58258063	58258063	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatggccagggtatagcacTaggatctgagcaggagaaca	13	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58258063	G	G	58258063	1	3	26	0	1	0	0	0	0	0	0	0	17190	1537	53	5		5	USP32	17	58258063	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1687657	58258063	22937147	1322	43406											
EFCAB3	146779	broad.mit.edu	37	chr17	60469360	60469360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctcattgtttttctcatAaaagatttttgtgaatatat	4	5	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60469360	G	G	60469360	1	3	26	0	1	0	0	0	0	0	0	0	4975	377	13	5		5	EFCAB3	17	60469360	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2211297	60469360	20725850	1323	43407											
MRC2	9902	broad.mit.edu	37	chr17	60768328	60768328	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaggcactctggtctggcAggacaacacagctgtgaact	13	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60768328	T	T	60768328	3	4	26	1	0	0	0	0	1	0	0	0	9852	188	7	5	4141	5	MRC2	17	60768328	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	298968	60768328	20426882	1324	43408											
ACE	1636	broad.mit.edu	37	chr17	61566371	61566371	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggagcaagacctggagcGgctcttccaggagctgcagc	14	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61566371	C	C	61566371	3	2	26	1	0	0	0	0	1	0	0	0	136	1116	39	4	2788	4	ACE	17	61566371	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	798043	61566371	19628839	1325	43409											
LRRC37A3	374819	broad.mit.edu	37	chr17	62855619	62855619	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctcattaatgtagttctCagtcttccattggtccgtat	7	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62855619	G	G	62855619	3	3	26	1	0	0	0	0	1	0	0	0	9080	835	29	4	275	4	LRRC37A3	17	62855619	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1289248	62855619	18339591	1326	43410											
GNA13	10672	broad.mit.edu	37	chr17	63049634	63049634	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttaccagttgaaattctcGacgccggtcataggcattct	8	11	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63049634	A	A	63049634	4	1	26	1	0	0	0	0	0	1	0	0	6565	1066	37	4	649	4	GNA13	17	63049634	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	194015	63049634	18145576	1327	43411											
AXIN2	8313	broad.mit.edu	37	chr17	63554271	63554271	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgatgccatctcttatGtaggtcttggtggcaggctt	11	8	3	1	rs62640025		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63554271	T	T	63554271	4	4	26	1	0	0	0	0	0	1	0	0	1242	1372	48	3	2103	3	AXIN2	17	63554271	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	504637	63554271	17640939	1328	43412											
PRKCA	5578	broad.mit.edu	37	chr17	64684432	64684432	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtagcaaattgaaaccTtcagacaaagaccgacgact	7	10	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64684432	C	C	64684432	2	2	26	1	0	0	0	0	0	0	0	1	12613	1596	56	5		5	PRKCA	17	64684432	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	1130161	64684432	16510778	1329	43413											
ABCA10	10349	broad.mit.edu	37	chr17	67178860	67178860	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctccattgtaggagggatCatctgagccatttctgtttc	11	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67178860	A	A	67178860	3	1	26	1	0	0	0	0	1	0	0	0	29	826	29	3	2120	3	ABCA10	17	67178860	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2494428	67178860	14016350	1330	43414											
CD300LF	146722	broad.mit.edu	37	chr17	72700714	72700714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagttttcatgagatcctcCatggtcacagtgaacgtgcg	10	10	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72700714	T	T	72700714	3	4	26	1	0	0	0	0	1	0	0	0	3031	594	21	4	611	4	CD300LF	17	72700714	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	5521854	72700714	8494496	1331	43415											
SLC9A3R1	9368	broad.mit.edu	37	chr17	72758059	72758059	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgcatcctcccaaaccttCcttggttggggagatgggga	12	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72758059	T	T	72758059	1	4	26	0	1	0	0	0	0	0	0	0	14828	870	30	4		4	SLC9A3R1	17	72758059	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	57345	72758059	8437151	1332	43416											
GRB2	2885	broad.mit.edu	37	chr17	73317748	73317748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaggcttacctgtggcaCctgttctatgtcccgcagga	12	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73317748	A	A	73317748	3	1	26	1	0	0	0	0	1	0	0	0	6824	507	18	3	201	3	GRB2	17	73317748	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	559689	73317748	7877462	1333	43417											
ITGB4	3691	broad.mit.edu	37	chr17	73736726	73736727	+	Intron	DNP	GG	TT	TT													agggcagaaggccagagcctGggcccaggatgctgccccac							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	73736727	TT	TT	73736726	1	4	26	0	1	0	0	0	0	0	0	0	7967	1363	47	2		2	ITGB4	17	73736726	Intron	DNP	GG	TCGA-05-4432-01A-01D-1265-08	418978	73736726	7458484	1334	43418											
GALR2	8811	broad.mit.edu	37	chr17	74071267	74071267	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctgctgtgcaaggcggtGcacttcctcatcttcctcac	9	15	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74071267	T	T	74071267	2	4	26	1	0	0	0	0	0	0	0	1	6290	1306	46	3		3	GALR2	17	74071267	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	334541	74071267	7123943	1335	43419											
MFSD11	79157	broad.mit.edu	37	chr17	74770938	74770938	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggtcatcattatcattgtCtgcaagtgctgaggtgttgg	12	6	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74770938	T	T	74770938	1	4	26	0	1	0	0	0	0	0	0	0	9622	928	32	4		4	MFSD11	17	74770938	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	699671	74770938	6424272	1336	43420											
SEC14L1	6397	broad.mit.edu	37	chr17	75196633	75196633	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatattgacaaagccagagAgatcatgtgtcagtctttga	9	6	3	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75196633	G	G	75196633	3	3	26	1	0	0	0	0	1	0	0	0	14094	304	11	5	913	5	SEC14L1	17	75196633	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	425695	75196633	5998577	1337	43421											
DNAH17	8632	broad.mit.edu	37	chr17	76447034	76447034	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggcccaggctttgagCgggaggaacgagctcaggtc	16	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76447034	T	T	76447034	1	4	26	0	1	0	0	0	0	0	0	0	4641	783	27	4		4	DNAH17	17	76447034	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1250401	76447034	4748176	1338	43422											
ENGASE	64772	broad.mit.edu	37	chr17	77080396	77080396	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttagatgccccatatgaGggaatcccatacggtatttc	8	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77080396	A	A	77080396	1	1	26	0	1	0	0	0	0	0	0	0	5160	1015	35	4		4	ENGASE	17	77080396	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	633362	77080396	4114814	1339	43423											
P4HB	5034	broad.mit.edu	37	chr17	79817264	79817264	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggccacaccaaggggcatCtggaagcggaaatgagatgc	15	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79817264	A	A	79817264	5	1	26	1	0	0	0	0	0	0	1	0	11453	927	32	3	1421	3	P4HB	17	79817264	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	2736868	79817264	1377946	1340	43424											
NOTUM	147111	broad.mit.edu	37	chr17	79916180	79916180	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatccggccccgtccctgcCctgccatgccctgggaaggc	11	20	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79916180	T	T	79916180	1	4	26	0	1	0	0	0	0	0	0	0	10647	638	22	4		4	NOTUM	17	79916180	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	98916	79916180	1279030	1341	43425											
GPS1	2873	broad.mit.edu	37	chr17	80011140	80011140	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgccaggtgcctggccCatgttgcagggggccgtgga	19	10	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80011140	G	G	80011140	1	3	26	0	1	0	0	0	0	0	0	0	6798	609	21	4		4	GPS1	17	80011140	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	94960	80011140	1184070	1342	43426											
WDR45L	56270	broad.mit.edu	37	chr17	80585243	80585243	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcagcgatgccagcttggCgcctaaggtgttttctcttc	11	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80585243	T	T	80585243	1	4	26	0	1	0	0	0	0	0	0	0	17425	783	27	4		4	WDR45L	17	80585243	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	574103	80585243	609967	1343	43427											
EPB41L3	23136	broad.mit.edu	37	chr18	5397266	5397266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgtgctgcagcatcccCgctgtctcccgccgagtaag	13	15	1	0	rs140662824		TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5397266	A	A	5397266	3	1	26	1	0	0	0	0	1	0	0	0	5196	652	23	1	651	1	EPB41L3	18	5397266	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08		5397266	72679982	1344	43428											
EPB41L3	23136	broad.mit.edu	37	chr18	5489113	5489113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcgcgcccctgcgcccCcgccgcctcctggggctcgg	13	24	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5489113	A	A	5489113	3	1	26	1	0	0	0	0	1	0	0	0	5196	623	22	2	3277	2	EPB41L3	18	5489113	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	91847	5489113	72588135	1345	43429											
KIAA0802	23255	broad.mit.edu	37	chr18	8829067	8829068	+	Intron	DNP	GG	TT	TT													agggagttctgcccggtggcGgtaccctcgctcaccccaag							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	8829068	TT	TT	8829067	1	4	26	0	1	0	0	0	0	0	0	0	8264	1131	39	1		1	KIAA0802	18	8829067	Intron	DNP	GG	TCGA-05-4432-01A-01D-1265-08	3339954	8829067	69248181	1346	43430											
FAM38B	63895	broad.mit.edu	37	chr18	10691086	10691086	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcatatttgttcctttgCcaacatcgtaagagttccac	8	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10691086	T	T	10691086	1	4	26	0	1	0	0	0	0	0	0	0	5606	754	26	4		4	FAM38B	18	10691086	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1862019	10691086	67386162	1347	43431											
SEH1L	81929	broad.mit.edu	37	chr18	12982490	12982490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaactttgtttggaatGcctcagaaaatgttttttat	6	4	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12982490	T	T	12982490	1	4	26	0	1	0	0	0	0	0	0	0	14122	1334	46	3		3	SEH1L	18	12982490	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2291404	12982490	65094758	1348	43432											
ZNF519	162655	broad.mit.edu	37	chr18	14132189	14132189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgcagactcgactcgCagactaggtcccgtcaccgc	11	15	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14132189	A	A	14132189	1	1	26	0	1	0	0	0	0	0	0	0	18091	725	25	3		3	ZNF519	18	14132189	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1149699	14132189	63945059	1349	43433											
ROCK1	6093	broad.mit.edu	37	chr18	18586524	18586524	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaatcttacagctgtgtccGattctgtcctaagtaagtca	7	10	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18586524	A	A	18586524	3	1	26	1	0	0	0	0	1	0	0	0	13628	1059	37	4	2463	4	ROCK1	18	18586524	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4454335	18586524	59490724	1350	43434											
CABLES1	91768	broad.mit.edu	37	chr18	20716572	20716572	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagctgcagaggtcccgGtgagtatccgggatgcgacg	17	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20716572	T	T	20716572	5	4	26	1	0	0	0	0	0	0	1	0	2555	1275	44	3	848	3	CABLES1	18	20716572	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	2130048	20716572	57360676	1351	43435											
OSBPL1A	114876	broad.mit.edu	37	chr18	21883564	21883564	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggtcagtatctatgtgtTaaagagtgattgtagggata	12	3	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21883564	G	G	21883564	1	3	26	0	1	0	0	0	0	0	0	0	11371	1769	61	5		5	OSBPL1A	18	21883564	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1166992	21883564	56193684	1352	43436											
DSC2	1824	broad.mit.edu	37	chr18	28669614	28669614	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatttcagcagagctttcatCtatatatttatgaaatctca	4	7	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28669614	A	A	28669614	1	1	26	0	1	0	0	0	0	0	0	0	4806	928	32	3		3	DSC2	18	28669614	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	6786050	28669614	49407634	1353	43437											
FHOD3	80206	broad.mit.edu	37	chr18	34326842	34326842	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctccccagaggcagtttTgtctctcagttcaggctggt	10	11	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34326842	C	C	34326842	1	2	26	0	1	0	0	0	0	0	0	0	5940	1827	63	5		5	FHOD3	18	34326842	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	5657228	34326842	43750406	1354	43438											
CELF4	56853	broad.mit.edu	37	chr18	34854358	34854359	+	Missense_Mutation	DNP	CC	AA	AA													ccagccatctgctgcattcgCcgcatcgtgcgctccttgtc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	34854359	AA	AA	34854358	3	1	26	1	0	0	0	0	1	0	0	0	3248	726	26	3	771	3	CELF4	18	34854358	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	527516	34854358	43222890	1355	43439											
PSTPIP2	9050	broad.mit.edu	37	chr18	43619913	43619913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacagagcatcatcgtacCtttcttttagaaagtcttca	7	9	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43619913	A	A	43619913	3	1	26	1	0	0	0	0	1	0	0	0	12828	695	24	2	922	2	PSTPIP2	18	43619913	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	8765555	43619913	34457335	1356	43440											
MRO	83876	broad.mit.edu	37	chr18	48342067	48342067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgaccgttatggatctGgtagtggaaatggtggatat	16	3	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48342067	T	T	48342067	1	4	26	0	1	0	0	0	0	0	0	0	9866	1363	47	2		2	MRO	18	48342067	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4722154	48342067	29735181	1357	43441											
DCC	1630	broad.mit.edu	37	chr18	50705378	50705378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtcccttcagctcactGtgggaaacctgaagccagaa	11	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50705378	T	T	50705378	3	4	26	1	0	0	0	0	1	0	0	0	4315	1377	48	3	1499	3	DCC	18	50705378	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2363311	50705378	27371870	1358	43442											
WDR7	23335	broad.mit.edu	37	chr18	54547264	54547264	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgctattgttttacttggaGtaataggagctgaatttggt	11	5	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54547264	C	C	54547264	3	2	26	1	0	0	0	0	1	0	0	0	17447	1029	36	4	3472	4	WDR7	18	54547264	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3841886	54547264	23529984	1359	43443											
ALPK2	115701	broad.mit.edu	37	chr18	56204617	56204617	+	Frame_Shift_Del	DEL	G	-	-													tcaagccctcctgagttgctGgggcttggctgctcctggcc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56204617	-	-	56204617	7	5	26	1	0	1	0	1	0	0	0	0	545	1335	47	0	3746	0	ALPK2	18	56204617	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	1657353	56204617	21872631	1360	43444											
CDH20	28316	broad.mit.edu	37	chr18	59203895	59203895	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagttggtctccatgcagTgacaaaatataggtgttata	10	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59203895	G	G	59203895	1	3	26	0	1	0	0	0	0	0	0	0	3136	1711	59	5		5	CDH20	18	59203895	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2999278	59203895	18873353	1361	43445											
VPS4B	9525	broad.mit.edu	37	chr18	61077680	61077680	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttatcaccctgtgcttcatCtattaaagggaaatgagaga	8	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61077680	G	G	61077680	5	3	26	1	0	0	0	0	0	0	1	0	17340	927	32	4	1231	4	VPS4B	18	61077680	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	1873785	61077680	16999568	1362	43446											
SERPINB12	89777	broad.mit.edu	37	chr18	61223383	61223383	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttggttttagatcgttatAagttttacaatggactctct	7	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61223383	G	G	61223383	1	3	26	0	1	0	0	0	0	0	0	0	14212	377	13	5		5	SERPINB12	18	61223383	5'Flank	SNP	A	TCGA-05-4432-01A-01D-1265-08	145703	61223383	16853865	1363	43447											
SERPINB10	5273	broad.mit.edu	37	chr18	61587111	61587111	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatcaaatcagaaaggacatCaactcttgggttgaaagaca	9	7	4	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61587111	T	T	61587111	2	4	26	1	0	0	0	0	0	0	0	1	14210	816	29	4		4	SERPINB10	18	61587111	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	363728	61587111	16490137	1364	43448											
CDH7	1005	broad.mit.edu	37	chr18	63481832	63481832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtacttctcagtggagcCaaagacaggtaaaaattgaa	10	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63481832	A	A	63481832	3	1	26	1	0	0	0	0	1	0	0	0	3145	594	21	2	627	2	CDH7	18	63481832	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1894721	63481832	14595416	1365	43449											
C18orf62	284274	broad.mit.edu	37	chr18	73139189	73139189	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagctcttcctcagattggGaattggaattgggaggttgt	14	6	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73139189	T	T	73139189	1	4	26	0	1	0	0	0	0	0	0	0	1925	1189	41	3		3	C18orf62	18	73139189	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	9657357	73139189	4938059	1366	43450											
NFATC1	4772	broad.mit.edu	37	chr18	77221374	77221374	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgcaagccggtgagtgCctttggcgcagctggagcta	15	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77221374	T	T	77221374	1	4	26	0	1	0	0	0	0	0	0	0	10456	754	26	4		4	NFATC1	18	77221374	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	4082185	77221374	855874	1367	43451											
NFATC1	4772	broad.mit.edu	37	chr18	77246996	77246996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccatggcgtgagctcatGgaggggccgtgtgcgtgctg	19	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77246996	T	T	77246996	1	4	26	0	1	0	0	0	0	0	0	0	10456	1363	47	2		2	NFATC1	18	77246996	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	25622	77246996	830252	1368	43452											
STK11	6794	broad.mit.edu	37	chr19	1219359	1219360	+	Nonsense_Mutation	DNP	GG	TT	TT													tactgcgtgtgtggcatgcaGgaaatgctggacagcgtgcc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1219360	TT	TT	1219359	4	4	26	1	0	0	0	0	0	1	0	0	15405	991	35	2	421	2	STK11	19	1219359	Nonsense_Mutation	DNP	GG	TCGA-05-4432-01A-01D-1265-08		1219359	57909624	1369	43453											
AP3D1	8943	broad.mit.edu	37	chr19	2114393	2114393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccaagcatgtggcagtgcGggacctgctcctccagcccc	12	16	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2114393	A	A	2114393	1	1	26	0	1	0	0	0	0	0	0	0	748	1131	39	4		4	AP3D1	19	2114393	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	895034	2114393	57014590	1370	43454											
C19orf29	58509	broad.mit.edu	37	chr19	3624101	3624101	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgagtgccacttgggcCgcggggggctccggcttcgc	16	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3624101	G	G	3624101	3	3	26	1	0	0	0	0	1	0	0	0	1937	652	23	4	2085	4	C19orf29	19	3624101	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1509708	3624101	55504882	1371	43455											
SAFB2	9667	broad.mit.edu	37	chr19	5616089	5616089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacgagcagcacgcgagCaccaggtgcctcggggctat	13	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5616089	A	A	5616089	1	1	26	0	1	0	0	0	0	0	0	0	13918	725	25	3		3	SAFB2	19	5616089	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1991988	5616089	53512894	1372	43456											
NDUFA11	126328	broad.mit.edu	37	chr19	5896936	5896936	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcagtgaacgtgtattgtCcaaccttagccactccttca	7	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5896936	T	T	5896936	3	4	26	1	0	0	0	0	1	0	0	0	10356	855	30	4	267	4	NDUFA11	19	5896936	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	280847	5896936	53232047	1373	43457											
C3	718	broad.mit.edu	37	chr19	6679343	6679343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtatgggtctgggggtcCctgaccatgggatagatgac	17	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6679343	A	A	6679343	1	1	26	0	1	0	0	0	0	0	0	0	2226	638	22	2		2	C3	19	6679343	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	782407	6679343	52449640	1374	43458											
SH2D3A	10045	broad.mit.edu	37	chr19	6755233	6755233	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccatcggaggccctgagaCtgtcggcaacagttcccagg	13	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6755233	T	T	6755233	3	4	26	1	0	0	0	0	1	0	0	0	14346	565	20	4	1164	4	SH2D3A	19	6755233	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	75890	6755233	52373750	1375	43459											
ELAVL1	1994	broad.mit.edu	37	chr19	8038675	8038675	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgagagaacatgtcttctaCgtccttctgggtcatggtcc	10	12	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8038675	G	G	8038675	3	3	26	1	0	0	0	0	1	0	0	0	5091	536	19	4	628	4	ELAVL1	19	8038675	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1283442	8038675	51090308	1376	43460											
SMARCA4	6597	broad.mit.edu	37	chr19	11138617	11138617	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgcggctttaaatacctcAggcttgatggtgagtatgag	12	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11138617	G	G	11138617	3	3	26	1	0	0	0	0	1	0	0	0	14884	179	7	5	3463	5	SMARCA4	19	11138617	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	3099942	11138617	47990366	1377	43461											
SMARCA4	6597	broad.mit.edu	37	chr19	11144113	11144113	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagaaggtgatccaggccGgcatgttcgaccagaagtcc	12	12	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11144113	A	A	11144113	3	1	26	1	0	0	0	0	1	0	0	0	14884	1116	39	4	3792	4	SMARCA4	19	11144113	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	5496	11144113	47984870	1378	43462											
CD97	976	broad.mit.edu	37	chr19	14492287	14492287	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtggagacgggacagcCctgtcccactcactctttcc	10	16	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14492287	T	T	14492287	1	4	26	0	1	0	0	0	0	0	0	0	3079	638	22	4		4	CD97	19	14492287	5'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	3348174	14492287	44636696	1379	43463											
EMR2	30817	broad.mit.edu	37	chr19	14882983	14882983	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttttcccttggccttcacAccacgctgcctctctgggct	8	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14882983	T	T	14882983	1	4	26	0	1	0	0	0	0	0	0	0	5147	174	6	5		5	EMR2	19	14882983	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	390696	14882983	44246000	1380	43464											
OR7A10	390892	broad.mit.edu	37	chr19	14952213	14952213	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggcaacaccattaagctTtgtaacatggaattcagaac	8	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14952213	C	C	14952213	2	2	26	1	0	0	0	0	0	0	0	1	11308	1838	64	5		5	OR7A10	19	14952213	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	69230	14952213	44176770	1381	43465											
EPS15L1	58513	broad.mit.edu	37	chr19	16503150	16503150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggtttttcgtgaatggatCcgaggtaaatgggtcattct	13	5	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16503150	A	A	16503150	3	1	26	1	0	0	0	0	1	0	0	0	5235	855	30	3	546	3	EPS15L1	19	16503150	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1550937	16503150	42625833	1382	43466											
EPS15L1	58513	broad.mit.edu	37	chr19	16535930	16535930	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgcttgggggacaggctCcctgtgctgttgaggctgct	16	10	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16535930	A	A	16535930	2	1	26	1	0	0	0	0	0	0	0	1	5235	842	30	3		3	EPS15L1	19	16535930	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	32780	16535930	42593053	1383	43467											
SIN3B	23309	broad.mit.edu	37	chr19	16973310	16973310	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcataggatccagctaccgGgcactccccaaaacctacca	7	17	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16973310	T	T	16973310	2	4	26	1	0	0	0	0	0	0	0	1	14439	1219	43	2		2	SIN3B	19	16973310	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	437380	16973310	42155673	1384	43468											
MAST3	23031	broad.mit.edu	37	chr19	18245766	18245766	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctttggagatacccccgAggaactcttcggtcaggtgg	12	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18245766	T	T	18245766	3	4	26	1	0	0	0	0	1	0	0	0	9418	304	11	5	1819	5	MAST3	19	18245766	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	1272456	18245766	40883217	1385	43469											
FKBP8	23770	broad.mit.edu	37	chr19	18649233	18649233	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggccgcgtgcggggggaTgtatgggctcctgctagttg	19	9	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18649233	C	C	18649233	3	2	26	1	0	0	0	0	1	0	0	0	5971	1464	51	5	696	5	FKBP8	19	18649233	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	403467	18649233	40479750	1386	43470											
NCAN	1463	broad.mit.edu	37	chr19	19359719	19359719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctcccagagatctcaaCataggtttttggtatttcta	7	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19359719	A	A	19359719	1	1	26	0	1	0	0	0	0	0	0	0	10299	493	17	3		3	NCAN	19	19359719	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	710486	19359719	39769264	1387	43471											
SF4	57794	broad.mit.edu	37	chr19	19389590	19389590	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccccggcccatctttgtcAgctgctcggcccattctgct	9	17	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19389590	G	G	19389590	3	3	26	1	0	0	0	0	1	0	0	0	14268	188	7	5	409	5	SF4	19	19389590	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	29871	19389590	39739393	1388	43472											
ZNF253	56242	broad.mit.edu	37	chr19	20003499	20003499	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgaacgaaaaccctacatAgtgaagaatgtgacagatct	8	7	1	5			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20003499	C	C	20003499	2	2	26	1	0	0	0	0	0	0	0	1	17923	410	15	5		5	ZNF253	19	20003499	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	613909	20003499	39125484	1389	43473											
ZNF737	100129842	broad.mit.edu	37	chr19	20736525	20736525	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttctcaccaaggaagacCaggtttctgtagttctctaa	7	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20736525	A	A	20736525	2	1	26	1	0	0	0	0	0	0	0	1	18255	581	21	2		2	ZNF737	19	20736525	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	733026	20736525	38392458	1390	43474											
ZNF85	7639	broad.mit.edu	37	chr19	21116875	21116875	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatagaattctctctgaagGagtggcaatgcctggacact	10	10	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21116875	T	T	21116875	4	4	26	1	0	0	0	0	0	1	0	0	18322	1175	41	3	55	3	ZNF85	19	21116875	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	380350	21116875	38012108	1391	43475											
ZNF208	7757	broad.mit.edu	37	chr19	22155159	22155159	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaaaacctttgccacattCttcacatttgtagggtttct	5	10	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22155159	A	A	22155159	4	1	26	1	0	0	0	0	0	1	0	0	17892	922	32	3	1169	3	ZNF208	19	22155159	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1038284	22155159	36973824	1392	43476											
TSHZ3	57616	broad.mit.edu	37	chr19	31770490	31770490	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgactcgctgtccatttcaTggcaggaaaactcggcggcc	12	12	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31770490	A	A	31770490	3	1	26	1	0	0	0	0	1	0	0	0	16750	1464	51	5	3040	5	TSHZ3	19	31770490	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	9615331	31770490	27358493	1393	43477											
WDR88	126248	broad.mit.edu	37	chr19	33628485	33628485	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaaattcatttttttccgGgtggtttattgcaagtgttt	8	4	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33628485	C	C	33628485	1	2	26	0	1	0	0	0	0	0	0	0	17462	1247	43	4		4	WDR88	19	33628485	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1857995	33628485	25500498	1394	43478											
KCTD15	79047	broad.mit.edu	37	chr19	34302605	34302605	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcaacaatgtgtcgatgcAtaatttatgtccctctcata	7	9	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34302605	G	G	34302605	1	3	26	0	1	0	0	0	0	0	0	0	8172	232	8	5		5	KCTD15	19	34302605	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	674120	34302605	24826378	1395	43479											
KIAA0355	9710	broad.mit.edu	37	chr19	34821190	34821190	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgctgaaccaggtttgcCcttccacatggcgaggtgcc	12	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34821190	T	T	34821190	3	4	26	1	0	0	0	0	1	0	0	0	8240	623	22	4	1223	4	KIAA0355	19	34821190	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	518585	34821190	24307793	1396	43480											
HAMP	57817	broad.mit.edu	37	chr19	35775840	35775840	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattcccttccttcccacaGcccatgttccagaggcgaag	7	16	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35775840	T	T	35775840	5	4	26	1	0	0	0	0	0	0	1	0	7014	985	34	3	160	3	HAMP	19	35775840	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	954650	35775840	23353143	1397	43481											
DMKN	93099	broad.mit.edu	37	chr19	36003863	36003863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaagcctgcaagtaagagAtccatccatcctttcaaccg	7	13	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36003863	T	T	36003863	1	4	26	0	1	0	0	0	0	0	0	0	4622	348	12	5		5	DMKN	19	36003863	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	228023	36003863	23125120	1398	43482											
ATP4A	495	broad.mit.edu	37	chr19	36043857	36043857	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaactcagtcacacgtggAggaacaagtgggccgcacac	12	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36043857	G	G	36043857	1	3	26	0	1	0	0	0	0	0	0	0	1149	319	11	5		5	ATP4A	19	36043857	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	39994	36043857	23085126	1399	43483											
NPHS1	4868	broad.mit.edu	37	chr19	36336500	36336500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaggctggagaggcactAggcgggggcgggacatgcgt	20	9	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36336500	G	G	36336500	1	3	26	0	1	0	0	0	0	0	0	0	10677	435	15	5		5	NPHS1	19	36336500	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	292643	36336500	22792483	1400	43484											
KIRREL2	84063	broad.mit.edu	37	chr19	36347997	36347997	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaaggccagtgcgacggcAaatctcgtgaaccttggggg	17	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36347997	C	C	36347997	1	2	26	0	1	0	0	0	0	0	0	0	8396	145	5	5		5	KIRREL2	19	36347997	5'UTR	SNP	A	TCGA-05-4432-01A-01D-1265-08	11497	36347997	22780986	1401	43485											
ZFP14	57677	broad.mit.edu	37	chr19	36831785	36831785	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggctttcccacattcctTacattcatagagcttttcag	6	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36831785	C	C	36831785	3	2	26	1	0	0	0	0	1	0	0	0	17765	1763	61	5	662	5	ZFP14	19	36831785	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	483788	36831785	22297198	1402	43486											
ZFP82	284406	broad.mit.edu	37	chr19	36884792	36884792	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagatgtgcgtttctggtaAgaggacaccttttcagatgg	12	7	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36884792	G	G	36884792	2	3	26	1	0	0	0	0	0	0	0	1	17779	59	3	5		5	ZFP82	19	36884792	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	53007	36884792	22244191	1403	43487											
ZNF585A	199704	broad.mit.edu	37	chr19	37643891	37643891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggaaatgaaggatttgcCacagttactgcactcatatg	9	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37643891	A	A	37643891	3	1	26	1	0	0	0	0	1	0	0	0	18144	594	21	2	1403	2	ZNF585A	19	37643891	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	759099	37643891	21485092	1404	43488											
ZNF607	84775	broad.mit.edu	37	chr19	38190487	38190487	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgttgagcaaggtttgcaGgataactgaagaccttccca	10	9	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38190487	C	C	38190487	3	2	26	1	0	0	0	0	1	0	0	0	18160	1000	35	4	1549	4	ZNF607	19	38190487	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	546596	38190487	20938496	1405	43489											
IL28B	282617	broad.mit.edu	37	chr19	39735416	39735416	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccatggcaggagggcagGgggagactcactaaggcatc	16	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39735416	A	A	39735416	1	1	26	0	1	0	0	0	0	0	0	0	7753	1247	43	4		4	IL28B	19	39735416	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1544929	39735416	19393567	1406	43490											
PLEKHG2	64857	broad.mit.edu	37	chr19	39914084	39914084	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggaggattcggatctggGtggagacagcgggagcggga	20	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39914084	A	A	39914084	3	1	26	1	0	0	0	0	1	0	0	0	12164	1261	44	4	2456	4	PLEKHG2	19	39914084	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	178668	39914084	19214899	1407	43491											
SUPT5H	6829	broad.mit.edu	37	chr19	39966846	39966846	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggcaaggagataagatgGggccgttgggtgctgacatg	20	5	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39966846	C	C	39966846	1	2	26	0	1	0	0	0	0	0	0	0	15517	1247	43	4		4	SUPT5H	19	39966846	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	52762	39966846	19162137	1408	43492											
TIMM50	92609	broad.mit.edu	37	chr19	39978750	39978750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagtagtagttgtggactGcaagaaggaagccttccgcc	13	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39978750	T	T	39978750	3	4	26	1	0	0	0	0	1	0	0	0	16036	1319	46	3	1089	3	TIMM50	19	39978750	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	11904	39978750	19150233	1409	43493											
FCGBP	8857	broad.mit.edu	37	chr19	40424077	40424077	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaggctgagccgctccCcaccgaccacacacaggtca	10	18	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40424077	T	T	40424077	3	4	26	1	0	0	0	0	1	0	0	0	5835	623	22	4	14223	4	FCGBP	19	40424077	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	445327	40424077	18704906	1410	43494											
ZNF780B	163131	broad.mit.edu	37	chr19	40553220	40553220	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaggggtgtgactcctctCtgagcacatgggctgtccgg	14	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40553220	A	A	40553220	1	1	26	0	1	0	0	0	0	0	0	0	18282	928	32	3		3	ZNF780B	19	40553220	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	129143	40553220	18575763	1411	43495											
BLVRB	645	broad.mit.edu	37	chr19	40957343	40957343	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgtgcatccggatgtggtCatcagtcacagcctgcagtc	11	12	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40957343	T	T	40957343	3	4	26	1	0	0	0	0	1	0	0	0	1458	826	29	4	237	4	BLVRB	19	40957343	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	404123	40957343	18171640	1412	43496											
TGFB1	7040	broad.mit.edu	37	chr19	41847787	41847787	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccaggctacaaggctcaCctgaagcaatagttggtgtc	10	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41847787	A	A	41847787	5	1	26	1	0	0	0	0	0	0	1	0	15939	521	18	3	323	3	TGFB1	19	41847787	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	890444	41847787	17281196	1413	43497											
CEACAM8	1088	broad.mit.edu	37	chr19	43098829	43098829	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaacagaagtcctctgtcCcctctcagagccccgtcctc	6	19	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43098829	G	G	43098829	1	3	26	0	1	0	0	0	0	0	0	0	3228	638	22	4		4	CEACAM8	19	43098829	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1251042	43098829	16030154	1414	43498											
PSG8	440533	broad.mit.edu	37	chr19	43258604	43258604	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggataaagagcttttgtcctGatagctgaaacttcccatta	8	8	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43258604	C	C	43258604	4	2	26	1	0	0	0	0	0	1	0	0	12767	1294	45	4	181	4	PSG8	19	43258604	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	159775	43258604	15870379	1415	43499											
PSG6	5675	broad.mit.edu	37	chr19	43520065	43520065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttaccctgggactgaccGggaggctctgacaatttagc	12	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520065	T	T	43520065	1	4	26	0	1	0	0	0	0	0	0	0	12765	1131	39	1		1	PSG6	19	43520065	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	261461	43520065	15608918	1416	43500											
PSG6	5675	broad.mit.edu	37	chr19	43579465	43579465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctctggccatgtgtatttGggatggcagtctggcccaca	13	11	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43579465	T	T	43579465	1	4	26	0	1	0	0	0	0	0	0	0	12765	1363	47	2		2	PSG6	19	43579465	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	59400	43579465	15549518	1417	43501											
PSG5	5673	broad.mit.edu	37	chr19	43674120	43674120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaggaggagatgcagtcCcagatacaagcaaataagtc	12	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43674120	A	A	43674120	1	1	26	0	1	0	0	0	0	0	0	0	12764	638	22	2		2	PSG5	19	43674120	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	94655	43674120	15454863	1418	43502											
PSG4	5672	broad.mit.edu	37	chr19	43699060	43699060	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaaggtgtctatacttGgactggagagagactgagag	14	4	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43699060	A	A	43699060	1	1	26	0	1	0	0	0	0	0	0	0	12763	1363	47	4		4	PSG4	19	43699060	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	24940	43699060	15429923	1419	43503											
PSG9	5678	broad.mit.edu	37	chr19	43763022	43763022	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tactcacagaggacatttagGatgactgggttactgcggag	13	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43763022	T	T	43763022	2	4	26	1	0	0	0	0	0	0	0	1	12768	1164	41	3		3	PSG9	19	43763022	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	63962	43763022	15365961	1420	43504											
PSG9	5678	broad.mit.edu	37	chr19	43765798	43765798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccatcacaagctgtggacCcagagtctcccatgacacag	8	15	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43765798	A	A	43765798	1	1	26	0	1	0	0	0	0	0	0	0	12768	638	22	2		2	PSG9	19	43765798	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	2776	43765798	15363185	1421	43505											
ZNF229	7772	broad.mit.edu	37	chr19	44946982	44946982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctccccccacccaccccCtctattagctgtcacctctt	2	21	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44946982	A	A	44946982	1	1	26	0	1	0	0	0	0	0	0	0	17908	696	24	2		2	ZNF229	19	44946982	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1181184	44946982	14182001	1422	43506											
CEACAM20	125931	broad.mit.edu	37	chr19	45029229	45029229	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcaagtgggttggcattgAgggtgagctgggctgcagct	17	7	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45029229	T	T	45029229	3	4	26	1	0	0	0	0	1	0	0	0	3221	304	11	5	1734	5	CEACAM20	19	45029229	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	82247	45029229	14099754	1423	43507											
MEIS3	56917	broad.mit.edu	37	chr19	47909680	47909680	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgaggtctaatggaggtttGagaattgcacaatccccagc	11	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47909680	C	C	47909680	1	2	26	0	1	0	0	0	0	0	0	0	9562	1305	45	4		4	MEIS3	19	47909680	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2880451	47909680	11219303	1424	43508											
MEIS3	56917	broad.mit.edu	37	chr19	47920559	47920559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctgggaagctagccaGggctgcggggccatccacga	15	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47920559	T	T	47920559	3	4	26	1	0	0	0	0	1	0	0	0	9562	991	35	2	1248	2	MEIS3	19	47920559	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	10879	47920559	11208424	1425	43509											
PLA2G4C	8605	broad.mit.edu	37	chr19	48558262	48558262	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctcttctacttggggaaaGgggatcttgtggcggcggca	16	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48558262	C	C	48558262	2	2	26	1	0	0	0	0	0	0	0	1	12098	987	35	4		4	PLA2G4C	19	48558262	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	637703	48558262	10570721	1426	43510											
CYTH2	9266	broad.mit.edu	37	chr19	48979370	48979370	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagggcatcaccacctcaAcagatgccagggtttcctgg	10	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48979370	G	G	48979370	1	3	26	0	1	0	0	0	0	0	0	0	4237	58	2	5		5	CYTH2	19	48979370	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	421108	48979370	10149613	1427	43511											
CYTH2	9266	broad.mit.edu	37	chr19	48982391	48982391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgcagggcggctgtgaGtgtggaccccttctatgaga	14	10	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48982391	T	T	48982391	3	4	26	1	0	0	0	0	1	0	0	0	4237	1029	36	3	1173	3	CYTH2	19	48982391	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3021	48982391	10146592	1428	43512											
RASIP1	54922	broad.mit.edu	37	chr19	49224084	49224084	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggccacgggaggcccatGgcgataattggctggcagct	16	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49224084	A	A	49224084	3	1	26	1	0	0	0	0	1	0	0	0	13186	1348	47	4	32	4	RASIP1	19	49224084	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	241693	49224084	9904899	1429	43513											
FGF21	26291	broad.mit.edu	37	chr19	49260247	49260247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggagtcaagacatccagGttcctgtgccagcggccaga	13	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49260247	T	T	49260247	3	4	26	1	0	0	0	0	1	0	0	0	5907	1252	44	3	306	3	FGF21	19	49260247	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	36163	49260247	9868736	1430	43514											
RUVBL2	10856	broad.mit.edu	37	chr19	49513735	49513735	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgttcttcccccaccccCgccccatagaccaagttcgt	6	21	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49513735	T	T	49513735	1	4	26	0	1	0	0	0	0	0	0	0	13864	667	23	4		4	RUVBL2	19	49513735	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	253488	49513735	9615248	1431	43515											
TRPM4	54795	broad.mit.edu	37	chr19	49671273	49671273	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggtggtgtcagtgctgGggggatcggggggccccgtc	20	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49671273	A	A	49671273	3	1	26	1	0	0	0	0	1	0	0	0	16713	1232	43	4	381	4	TRPM4	19	49671273	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	157538	49671273	9457710	1432	43516											
CPT1C	126129	broad.mit.edu	37	chr19	50214055	50214055	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccggacggagacggtgCggtcttgcacgagggaggcc	19	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50214055	T	T	50214055	3	4	26	1	0	0	0	0	1	0	0	0	3865	759	27	4	1861	4	CPT1C	19	50214055	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	542782	50214055	8914928	1433	43517											
FAM71E1	112703	broad.mit.edu	37	chr19	50978701	50978701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcgttggcaacttctccCaaccgagtcacctggggcca	9	16	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50978701	A	A	50978701	3	1	26	1	0	0	0	0	1	0	0	0	5662	593	21	2	331	2	FAM71E1	19	50978701	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	764646	50978701	8150282	1434	43518											
SHANK1	50944	broad.mit.edu	37	chr19	51217450	51217450	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctccctacctcccgaatccGagtcatggtaattggggtcc	9	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51217450	T	T	51217450	4	4	26	1	0	0	0	0	0	1	0	0	14377	1059	37	3	5936	3	SHANK1	19	51217450	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	238749	51217450	7911533	1435	43519											
CLEC11A	6320	broad.mit.edu	37	chr19	51226833	51226833	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcccccagctcttgggCtttggccatggggctcgggg	17	12	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51226833	T	T	51226833	2	4	26	1	0	0	0	0	0	0	0	1	3528	784	28	4		4	CLEC11A	19	51226833	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	9383	51226833	7902150	1436	43520											
CD33	945	broad.mit.edu	37	chr19	51729438	51729438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggcctggctgagttcGggagccagaaggacatgagc	17	9	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51729438	T	T	51729438	1	4	26	0	1	0	0	0	0	0	0	0	3035	1131	39	1		1	CD33	19	51729438	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	502605	51729438	7399545	1437	43521											
CEACAM18	729767	broad.mit.edu	37	chr19	51983903	51983903	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggttgcaggcaatgagacCcaaagagcaaccggctggct	14	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51983903	A	A	51983903	2	1	26	1	0	0	0	0	0	0	0	1	3219	610	22	2		2	CEACAM18	19	51983903	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	254465	51983903	7145080	1438	43522											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52149504	52149504	+	Intron	DEL	C	-	-													gtcctctcctagggttcctgCcatacctgtcacctccaagt							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52149504	-	-	52149504	6	5	26	0	1	1	0	1	0	0	0	0	14422	754	26	0		0	SIGLEC14	19	52149504	Intron	DEL	C	TCGA-05-4432-01A-01D-1265-08	165601	52149504	6979479	1439	43523											
ZNF577	84765	broad.mit.edu	37	chr19	52376333	52376333	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaatagaaggttcttcCacaatcactgcatttataag	5	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52376333	A	A	52376333	4	1	26	1	0	0	0	0	0	1	0	0	18136	603	21	2	551	2	ZNF577	19	52376333	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	226829	52376333	6752650	1440	43524											
ZNF649	65251	broad.mit.edu	37	chr19	52394116	52394116	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatagggtctctctcccgTgtgagttctgtgatgtacaa	11	10	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52394116	C	C	52394116	3	2	26	1	0	0	0	0	1	0	0	0	18191	1696	59	5	248	5	ZNF649	19	52394116	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	17783	52394116	6734867	1441	43525											
ZNF614	80110	broad.mit.edu	37	chr19	52520455	52520455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttcaaattttttctgtaCaagtcaaatgtatcatgatt	5	5	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52520455	A	A	52520455	3	1	26	1	0	0	0	0	1	0	0	0	18166	477	17	3	1365	3	ZNF614	19	52520455	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	126339	52520455	6608528	1442	43526											
ZNF578	147660	broad.mit.edu	37	chr19	53007833	53007833	+	Intron	SNP	C	A	A													atcaaagaaatacttattttCtcttttctcatttcctgtga							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53007833	A	A	53007833	1	1	26	0	1	0	0	0	0	0	0	0	18137	928	32	3		3	ZNF578	19	53007833	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	487378	53007833	6121150	1443	43527	223	2									
ZNF578	147660	broad.mit.edu	37	chr19	53007839	53007839	+	Intron	SNP	T	C	C													gaaatacttattttctctttTctcatttcctgtgaaggtga							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53007839	C	C	53007839	1	2	26	0	1	0	0	0	0	0	0	0	18137	1798	62	5		5	ZNF578	19	53007839	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	6	53007839	6121144	1444	43528	223	2									
ZNF701	55762	broad.mit.edu	37	chr19	53086276	53086276	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcatagagttcatactGgagagaaaccttacaaatgt	8	7	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53086276	T	T	53086276	4	4	26	1	0	0	0	0	0	1	0	0	18232	1349	47	2	1176	2	ZNF701	19	53086276	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	78437	53086276	6042707	1445	43529											
ZNF415	55786	broad.mit.edu	37	chr19	53612346	53612346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatatgagttttctgatGtagtgcaaggcatgaatttc	9	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53612346	T	T	53612346	3	4	26	1	0	0	0	0	1	0	0	0	18019	1377	48	3	719	3	ZNF415	19	53612346	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	526070	53612346	5516637	1446	43530											
VN1R4	317703	broad.mit.edu	37	chr19	53770147	53770147	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actattgggattatccaaaaGagccatacaaacttggaaaa	7	7	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53770147	T	T	53770147	3	4	26	1	0	0	0	0	1	0	0	0	17307	942	33	3	136	3	VN1R4	19	53770147	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	157801	53770147	5358836	1447	43531											
ZNF845	91664	broad.mit.edu	37	chr19	53844656	53844656	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgggaatcttctctgaGtctgaagcatcctgcctgac	11	10	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53844656	T	T	53844656	1	4	26	0	1	0	0	0	0	0	0	0	18320	1044	36	3		3	ZNF845	19	53844656	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	74509	53844656	5284327	1448	43532											
ZNF813	126017	broad.mit.edu	37	chr19	53994622	53994622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatcatagacttcatacggGagagaaaccttataagtgta	8	8	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53994622	T	T	53994622	3	4	26	1	0	0	0	0	1	0	0	0	18304	1174	41	3	1146	3	ZNF813	19	53994622	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	149966	53994622	5134361	1449	43533											
ZNF331	55422	broad.mit.edu	37	chr19	54074759	54074759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacgggtgttcagtctgCtcacggtgttcaccctaccc	10	14	5	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54074759	A	A	54074759	1	1	26	0	1	0	0	0	0	0	0	0	17975	812	28	3		3	ZNF331	19	54074759	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	80137	54074759	5054224	1450	43534											
CACNG7	59284	broad.mit.edu	37	chr19	54444824	54444824	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtattttcattatcgctaCgggtggtcttttgccttcgc	9	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54444824	T	T	54444824	2	4	26	1	0	0	0	0	0	0	0	1	2588	547	19	4		4	CACNG7	19	54444824	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	370065	54444824	4684159	1451	43535											
RPS9	6203	broad.mit.edu	37	chr19	54705332	54705332	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtacgtgggactacacttGtccacccccttctccccacc	6	19	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54705332	T	T	54705332	1	4	26	0	1	0	0	0	0	0	0	0	13773	1392	48	3		3	RPS9	19	54705332	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	260508	54705332	4423651	1452	43536											
KIR2DL3	3804	broad.mit.edu	37	chr19	55270395	55270395	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attcttctcattgtcattggGatgcagagtgaatgatccac	9	8	3	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55270395	T	T	55270395	1	4	26	0	1	0	0	0	0	0	0	0	8388	1189	41	3		3	KIR2DL3	19	55270395	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	565063	55270395	3858588	1453	43537											
KIR2DL1	3802	broad.mit.edu	37	chr19	55282211	55282212	+	Intron	DNP	CT	TG	TG													accttcagcccaggaagggcCtggctaccaagactcacagc							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	55282212	TG	TG	55282211	1	4	26	0	1	0	0	0	0	0	0	0	8387	696	24	4		4	KIR2DL1	19	55282211	Intron	DNP	CT	TCGA-05-4432-01A-01D-1265-08	11816	55282211	3846772	1454	43538											
KIR2DL1	3802	broad.mit.edu	37	chr19	55284727	55284727	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcctgactcaatccaggTgccatggatgggatgataaa	12	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55284727	C	C	55284727	1	2	26	0	1	0	0	0	0	0	0	0	8387	1711	59	5		5	KIR2DL1	19	55284727	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2516	55284727	3844256	1455	43539											
NLRP2	55655	broad.mit.edu	37	chr19	55508638	55508638	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttggcttgccggagggcatCgatcagcactggctgcatta	13	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55508638	T	T	55508638	1	4	26	0	1	0	0	0	0	0	0	0	10572	899	31	4		4	NLRP2	19	55508638	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	223911	55508638	3620345	1456	43540											
SYT5	6861	broad.mit.edu	37	chr19	55687098	55687098	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaggcgaaggtctccccAaagtgagggttcagcgtctg	14	9	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55687098	T	T	55687098	3	4	26	1	0	0	0	0	1	0	0	0	15596	127	5	5	661	5	SYT5	19	55687098	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	178460	55687098	3441885	1457	43541											
SYT5	6861	broad.mit.edu	37	chr19	55689649	55689649	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttgcctgtccgcctcCgacagctcttccggtagaga	9	15	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55689649	T	T	55689649	3	4	26	1	0	0	0	0	1	0	0	0	15596	652	23	4	1021	4	SYT5	19	55689649	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2551	55689649	3439334	1458	43542											
SYT5	6861	broad.mit.edu	37	chr19	55690319	55690319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcggccccccacccccgGgtcttgctcacctgggccgt	11	20	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55690319	T	T	55690319	1	4	26	0	1	0	0	0	0	0	0	0	15596	1247	43	2		2	SYT5	19	55690319	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	670	55690319	3438664	1459	43543											
BRSK1	84446	broad.mit.edu	37	chr19	55813393	55813393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgtcatcctgcccccggtGgggtgggcggggagatgatc	17	10	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55813393	A	A	55813393	1	1	26	0	1	0	0	0	0	0	0	0	1532	1363	47	4		4	BRSK1	19	55813393	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	123074	55813393	3315590	1460	43544											
BRSK1	84446	broad.mit.edu	37	chr19	55817686	55817686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtacaaggccagtggcGgcccctccgtcttccaaaag	11	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55817686	T	T	55817686	3	4	26	1	0	0	0	0	1	0	0	0	1532	1116	39	1	2023	1	BRSK1	19	55817686	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4293	55817686	3311297	1461	43545											
NLRP9	338321	broad.mit.edu	37	chr19	56249156	56249156	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaccatactagaattccatCtcagtagacctggcaatgca	6	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56249156	A	A	56249156	1	1	26	0	1	0	0	0	0	0	0	0	10579	928	32	3		3	NLRP9	19	56249156	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	431470	56249156	2879827	1462	43546											
NLRP11	204801	broad.mit.edu	37	chr19	56303674	56303674	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgggagacttactgaagctCctctaactgacaggttggaa	12	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56303674	A	A	56303674	4	1	26	1	0	0	0	0	0	1	0	0	10568	864	30	3	611	3	NLRP11	19	56303674	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	54518	56303674	2825309	1463	43547											
ZNF71	58491	broad.mit.edu	37	chr19	57132930	57132930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcctggtcccaccacGgctggacgaccccacagaaa	10	16	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57132930	T	T	57132930	3	4	26	1	0	0	0	0	1	0	0	0	18242	1116	39	1	277	1	ZNF71	19	57132930	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	829256	57132930	1996053	1464	43548											
ZNF835	90485	broad.mit.edu	37	chr19	57176167	57176167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgcaaatggcttctcccCggtgtggattctctggtgta	12	11	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57176167	A	A	57176167	3	1	26	1	0	0	0	0	1	0	0	0	18315	652	23	1	1215	1	ZNF835	19	57176167	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	43237	57176167	1952816	1465	43549											
PEG3	5178	broad.mit.edu	37	chr19	57326770	57326770	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcgtaacttgtttgagggtCagtaggggccaagctgcgaa	16	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57326770	A	A	57326770	3	1	26	1	0	0	0	0	1	0	0	0	11814	826	29	3	1730	3	PEG3	19	57326770	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	150603	57326770	1802213	1466	43550											
USP29	57663	broad.mit.edu	37	chr19	57640419	57640419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgaaagcaggaatatgCtgaaggaaattgacaaaact	10	4	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57640419	A	A	57640419	3	1	26	1	0	0	0	0	1	0	0	0	17186	796	28	3	378	3	USP29	19	57640419	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	313649	57640419	1488564	1467	43551											
DUXA	503835	broad.mit.edu	37	chr19	57670488	57670488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagtcgcagttggctccGccgtagagaagctctgctgg	13	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57670488	T	T	57670488	1	4	26	0	1	0	0	0	0	0	0	0	4874	1102	38	3		3	DUXA	19	57670488	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	30069	57670488	1458495	1468	43552											
ZNF543	125919	broad.mit.edu	37	chr19	57839579	57839579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacctcatcatccacaCtggggagaagccctataagt	8	13	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57839579	A	A	57839579	3	1	26	1	0	0	0	0	1	0	0	0	18103	565	20	3	763	3	ZNF543	19	57839579	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	169091	57839579	1289404	1469	43553											
ZNF543	125919	broad.mit.edu	37	chr19	57839594	57839594	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacactggggagaagccctAtaagtgcatggagtgtggga	15	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57839594	G	G	57839594	3	3	26	1	0	0	0	0	1	0	0	0	18103	449	16	5	778	5	ZNF543	19	57839594	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	15	57839594	1289389	1470	43554											
ZNF547	284306	broad.mit.edu	37	chr19	57888516	57888516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgttgccatggagctgagGatgaggaggcacctttagag	16	6	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57888516	T	T	57888516	3	4	26	1	0	0	0	0	1	0	0	0	18106	1174	41	3	182	3	ZNF547	19	57888516	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	48922	57888516	1240467	1471	43555											
ZNF773	374928	broad.mit.edu	37	chr19	58016902	58016902	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatttctatcttttcttcctCagtcacccatttatatctat	2	11	6	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58016902	T	T	58016902	1	4	26	0	1	0	0	0	0	0	0	0	18275	841	29	4		4	ZNF773	19	58016902	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	128386	58016902	1112081	1472	43556											
ZNF671	79891	broad.mit.edu	37	chr19	58231742	58231742	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaaggttcagcctccagGggaaggctttcctgcatctg	14	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58231742	T	T	58231742	1	4	26	0	1	0	0	0	0	0	0	0	18205	1247	43	2		2	ZNF671	19	58231742	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	214840	58231742	897241	1473	43557											
ZNF256	10172	broad.mit.edu	37	chr19	58455277	58455277	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaggctagctcggggcAtagaggtgggtgtgaggacc	18	7	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58455277	G	G	58455277	1	3	26	0	1	0	0	0	0	0	0	0	17925	232	8	5		5	ZNF256	19	58455277	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	223535	58455277	673706	1474	43558											
ZSCAN1	284312	broad.mit.edu	37	chr19	58557212	58557212	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtagctcccggacaccCtcttgccagccgaccagctc	8	19	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58557212	T	T	58557212	1	4	26	0	1	0	0	0	0	0	0	0	18355	696	24	4		4	ZSCAN1	19	58557212	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	101935	58557212	571771	1475	43559											
ZNF8	7554	broad.mit.edu	37	chr19	58805952	58805952	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggacaaaccctacaaatgtActgactgtgggaagtcgttt	10	8	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58805952	G	G	58805952	3	3	26	1	0	0	0	0	1	0	0	0	18296	391	14	5	792	5	ZNF8	19	58805952	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	248740	58805952	323031	1476	43560											
SLC27A5	10998	broad.mit.edu	37	chr19	59021298	59021298	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaccacatcatcagctgTggccccagataaggacagca	9	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59021298	C	C	59021298	3	2	26	1	0	0	0	0	1	0	0	0	14643	1696	59	5	1131	5	SLC27A5	19	59021298	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	215346	59021298	107685	1477	43561											
DEFB132	400830	broad.mit.edu	37	chr20	238494	238494	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtaaactggataaataGgaggaaaggaaaactgggaa	13	4	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238494	A	A	238494	1	1	26	0	1	0	0	0	0	0	0	0	4457	1015	35	4		4	DEFB132	20	238494	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08		238494	62787026	1478	43562											
SRXN1	140809	broad.mit.edu	37	chr20	629553	629553	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgatggggggcacgctgtcTgggtcctcctggggagaaga	18	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	629553	A	A	629553	2	1	26	1	0	0	0	0	0	0	0	1	15291	1567	55	5		5	SRXN1	20	629553	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	391059	629553	62395967	1479	43563											
SIRPA	140885	broad.mit.edu	37	chr20	1915458	1915458	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtggcgtggttgcttcacaTcaaccggaattgcagatctg	12	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1915458	A	A	1915458	1	1	26	0	1	0	0	0	0	0	0	0	14445	1450	50	5		5	SIRPA	20	1915458	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	1285905	1915458	61110062	1480	43564											
TGM6	343641	broad.mit.edu	37	chr20	2375141	2375141	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcagcggtcgaggaatggCgctgcccaccacacccagga	14	14	0	0	rs147506152	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2375141	G	G	2375141	2	3	26	1	0	0	0	0	0	0	0	1	15957	755	27	4		4	TGM6	20	2375141	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	459683	2375141	60650379	1481	43565											
ProSAPiP1	9762	broad.mit.edu	37	chr20	3147061	3147061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggccttgggcttggccCaggctcttccctctggccaa	12	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3147061	A	A	3147061	1	1	26	0	1	0	0	0	0	0	0	0	12978	609	21	2		2	ProSAPiP1	20	3147061	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	771920	3147061	59878459	1482	43566											
C20orf194	25943	broad.mit.edu	37	chr20	3234358	3234358	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccacacagggaccacgcTgttccaaggatacgtgggtg	13	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3234358	A	A	3234358	1	1	26	0	1	0	0	0	0	0	0	0	2121	1595	55	5		5	C20orf194	20	3234358	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	87297	3234358	59791162	1483	43567											
ADAM33	80332	broad.mit.edu	37	chr20	3652889	3652889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagtaggtaaacgtctgGgggacagtgggaggaggtgc	19	6	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3652889	T	T	3652889	3	4	26	1	0	0	0	0	1	0	0	0	250	1232	43	2	988	2	ADAM33	20	3652889	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	418531	3652889	59372631	1484	43568											
ADRA1D	146	broad.mit.edu	37	chr20	4202311	4202311	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgctgcctctgcgcgctgCgcgcccccggcgcggatctt	13	19	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4202311	G	G	4202311	2	3	26	1	0	0	0	0	0	0	0	1	336	755	27	4		4	ADRA1D	20	4202311	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	549422	4202311	58823209	1485	43569											
RASSF2	9770	broad.mit.edu	37	chr20	4770302	4770302	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcatggtgctgttgatgcgGacgttggtgacagagccata	15	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4770302	T	T	4770302	2	4	26	1	0	0	0	0	0	0	0	1	13194	1161	41	3		3	RASSF2	20	4770302	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	567991	4770302	58255218	1486	43570											
SLC23A2	9962	broad.mit.edu	37	chr20	4837573	4837573	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttactcagcaaggaactaCagatacatgcctcactgcgg	9	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4837573	T	T	4837573	1	4	26	0	1	0	0	0	0	0	0	0	14577	493	17	4		4	SLC23A2	20	4837573	3'UTR	SNP	C	TCGA-05-4432-01A-01D-1265-08	67271	4837573	58187947	1487	43571											
C20orf30	29058	broad.mit.edu	37	chr20	5081562	5081562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaatgatcagcactggaaCggcccggtctgccccctggt	12	15	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5081562	A	A	5081562	3	1	26	1	0	0	0	0	1	0	0	0	2132	536	19	3	128	3	C20orf30	20	5081562	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	243989	5081562	57943958	1488	43572											
CDS2	8760	broad.mit.edu	37	chr20	5167503	5167503	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtatgtgccactcacagGgggtgagcggcctccatgga	16	10	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5167503	A	A	5167503	1	1	26	0	1	0	0	0	0	0	0	0	3208	1247	43	4		4	CDS2	20	5167503	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	85941	5167503	57858017	1489	43573											
TMX4	56255	broad.mit.edu	37	chr20	7963259	7963259	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgagcctcctctgatctcCgattctgctctatggaggga	10	11	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7963259	T	T	7963259	3	4	26	1	0	0	0	0	1	0	0	0	16392	652	23	4	364	4	TMX4	20	7963259	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2795756	7963259	55062261	1490	43574											
PAK7	57144	broad.mit.edu	37	chr20	9546831	9546831	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagctcaggtaggaagcCgtggagatgtactgcgaact	16	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9546831	A	A	9546831	2	1	26	1	0	0	0	0	0	0	0	1	11499	639	23	1		1	PAK7	20	9546831	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1583572	9546831	53478689	1491	43575											
ANKRD5	63926	broad.mit.edu	37	chr20	10033801	10033801	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaggcatatgctgattatAgaataattgatctgattaaa	7	4	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10033801	G	G	10033801	3	3	26	1	0	0	0	0	1	0	0	0	676	412	15	5	1938	5	ANKRD5	20	10033801	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	486970	10033801	52991719	1492	43576											
SNAP25	6616	broad.mit.edu	37	chr20	10273679	10273679	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaccagctctaatctgtggCgtccagttttctttcttttt	7	10	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10273679	T	T	10273679	1	4	26	0	1	0	0	0	0	0	0	0	14944	783	27	4		4	SNAP25	20	10273679	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	239878	10273679	52751841	1493	43577											
SNAP25	6616	broad.mit.edu	37	chr20	10279777	10279777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtatgaaagctaaaatGtgtttttgtactggatggag	11	2	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10279777	T	T	10279777	1	4	26	0	1	0	0	0	0	0	0	0	14944	1392	48	3		3	SNAP25	20	10279777	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	6098	10279777	52745743	1494	43578											
ISM1	140862	broad.mit.edu	37	chr20	13251398	13251398	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaaatatccaggtaattcTtggcacctggaagatgggag	11	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13251398	A	A	13251398	1	1	26	0	1	0	0	0	0	0	0	0	7930	1624	56	5		5	ISM1	20	13251398	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2971621	13251398	49774122	1495	43579											
TASP1	55617	broad.mit.edu	37	chr20	13371105	13371105	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgaaatgtgagtctgcaGagagagagagacagcagagc	14	6	2	6			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13371105	C	C	13371105	1	2	26	0	1	0	0	0	0	0	0	0	15708	957	33	4		4	TASP1	20	13371105	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	119707	13371105	49654415	1496	43580											
KIF16B	55614	broad.mit.edu	37	chr20	16488723	16488723	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttctacgtcaccataattCtgtactaaatgtttggataa	5	8	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16488723	A	A	16488723	3	1	26	1	0	0	0	0	1	0	0	0	8348	912	32	3	3454	3	KIF16B	20	16488723	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	3117618	16488723	46536797	1497	43581											
KIF16B	55614	broad.mit.edu	37	chr20	16496344	16496344	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacacacaaaagatacaatTatcatagattttaataatag	4	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16496344	C	C	16496344	1	2	26	0	1	0	0	0	0	0	0	0	8348	1769	61	5		5	KIF16B	20	16496344	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	7621	16496344	46529176	1498	43582											
CST4	1472	broad.mit.edu	37	chr20	23667702	23667702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagtgcatgactggccCgggacccgcatcaggaacgt	13	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23667702	A	A	23667702	1	1	26	0	1	0	0	0	0	0	0	0	4008	667	23	1		1	CST4	20	23667702	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	7171358	23667702	39357818	1499	43583											
DEFB118	117285	broad.mit.edu	37	chr20	29958068	29958068	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactgccagcagaaattgcCaactctgggggtttttagta	10	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29958068	T	T	29958068	1	4	26	0	1	0	0	0	0	0	0	0	4445	609	21	4		4	DEFB118	20	29958068	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	6290366	29958068	33067452	1500	43584											
TPX2	22974	broad.mit.edu	37	chr20	30363837	30363837	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcatgaggggtggttcttAacactcttggtaggtgtttt	12	5	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30363837	T	T	30363837	1	4	26	0	1	0	0	0	0	0	0	0	16556	377	13	5		5	TPX2	20	30363837	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	405769	30363837	32661683	1501	43585											
PLAGL2	5326	broad.mit.edu	37	chr20	30784356	30784356	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaaagttcagtggtccccCagctcctggggaatcttgag	11	13	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30784356	G	G	30784356	3	3	26	1	0	0	0	0	1	0	0	0	12115	594	21	4	104	4	PLAGL2	20	30784356	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	420519	30784356	32241164	1502	43586											
C20orf185	359710	broad.mit.edu	37	chr20	31651318	31651318	+	Intron	DEL	C	-	-													gccttccgccttgccttggtCcccagcaccacatagcagca							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31651318	-	-	31651318	6	5	26	0	1	1	0	1	0	0	0	0	2119	870	30	0		0	C20orf185	20	31651318	Intron	DEL	C	TCGA-05-4432-01A-01D-1265-08	866962	31651318	31374202	1503	43587											
C20orf186	149954	broad.mit.edu	37	chr20	31671619	31671619	+	Frame_Shift_Del	DEL	G	-	-													atggaggacttcttggaggaGggggtgtcctgggcgtgctc					rs2424943	byFrequency;by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31671619	-	-	31671619	7	5	26	1	0	1	0	1	0	0	0	0	2120	1000	35	0	626	0	C20orf186	20	31671619	Frame_Shift_Del	DEL	G	TCGA-05-4432-01A-01D-1265-08	20301	31671619	31353901	1504	43588											
C20orf71	128861	broad.mit.edu	37	chr20	31815324	31815324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcacactggtgacagacGctacctcttctccttacaga	9	13	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31815324	T	T	31815324	1	4	26	0	1	0	0	0	0	0	0	0	2139	1102	38	3		3	C20orf71	20	31815324	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	143705	31815324	31210196	1505	43589											
EDEM2	55741	broad.mit.edu	37	chr20	33703794	33703794	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaatttagtagtaagggtCaggcaatcccttaagaaggc	10	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33703794	T	T	33703794	1	4	26	0	1	0	0	0	0	0	0	0	4952	841	29	4		4	EDEM2	20	33703794	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1888470	33703794	29321726	1506	43590											
CEP250	11190	broad.mit.edu	37	chr20	34060658	34060658	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagacgccaggctgtgcaggTaggaaccctcagcattccac	12	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34060658	A	A	34060658	5	1	26	1	0	0	0	0	0	0	1	0	3282	1652	57	5	1245	5	CEP250	20	34060658	Splice_Site	SNP	T	TCGA-05-4432-01A-01D-1265-08	356864	34060658	28964862	1507	43591											
RBM12	10137	broad.mit.edu	37	chr20	34241207	34241207	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcactggttattgctgAaccaggcagtcctgtgctgg	12	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34241207	G	G	34241207	3	3	26	1	0	0	0	0	1	0	0	0	13221	246	9	5	764	5	RBM12	20	34241207	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	180549	34241207	28784313	1508	43592											
RBM12	10137	broad.mit.edu	37	chr20	34242230	34242230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccattatttcgacctaCatgatctttcaacaaatgca	3	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34242230	A	A	34242230	3	1	26	1	0	0	0	0	1	0	0	0	13221	478	17	3	1787	3	RBM12	20	34242230	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1023	34242230	28783290	1509	43593											
NFS1	9054	broad.mit.edu	37	chr20	34262603	34262603	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcagaaagacagtttgagAagcccttctcctataactgg	9	10	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34262603	T	T	34262603	1	4	26	0	1	0	0	0	0	0	0	0	10480	261	9	5		5	NFS1	20	34262603	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	20373	34262603	28762917	1510	43594											
C20orf152	140894	broad.mit.edu	37	chr20	34596240	34596240	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atactctcctatggaaagatTtaaggaattccagatcaaat	6	7	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34596240	A	A	34596240	3	1	26	1	0	0	0	0	1	0	0	0	2114	1841	64	5	1026	5	C20orf152	20	34596240	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	333637	34596240	28429280	1511	43595											
C20orf24	55969	broad.mit.edu	37	chr20	35236149	35236149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatgtgatctactggttccGacagatcattgctgtggtcc	11	9	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35236149	T	T	35236149	3	4	26	1	0	0	0	0	1	0	0	0	2127	1058	37	3	152	3	C20orf24	20	35236149	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	639909	35236149	27789371	1512	43596											
C20orf117	140710	broad.mit.edu	37	chr20	35444785	35444785	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accagccatggcattttgggGagcactatgtgctgggaaca	13	9	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35444785	A	A	35444785	1	1	26	0	1	0	0	0	0	0	0	0	2105	1189	41	4		4	C20orf117	20	35444785	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	208636	35444785	27580735	1513	43597											
C20orf132	140699	broad.mit.edu	37	chr20	35783522	35783522	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgagccatgctggccgtggCccgttcccgctcatggtctt	12	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35783522	G	G	35783522	3	3	26	1	0	0	0	0	1	0	0	0	2108	739	26	4	2186	4	C20orf132	20	35783522	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	338737	35783522	27241998	1514	43598											
PPP1R16B	26051	broad.mit.edu	37	chr20	37518060	37518060	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttattgttatccataataaGataggcagtggcatctacct	8	7	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37518060	A	A	37518060	1	1	26	0	1	0	0	0	0	0	0	0	12467	957	33	4		4	PPP1R16B	20	37518060	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1734538	37518060	25507460	1515	43599											
LPIN3	64900	broad.mit.edu	37	chr20	39985905	39985905	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtgctgggtgtggtgggGagtgagaggagccctccctt	18	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39985905	A	A	39985905	1	1	26	0	1	0	0	0	0	0	0	0	9007	1189	41	4		4	LPIN3	20	39985905	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	2467845	39985905	23039615	1516	43600											
JPH2	57158	broad.mit.edu	37	chr20	42747215	42747215	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggactcctggttggcagcCagggcggcctgttccgctgc	15	13	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42747215	T	T	42747215	2	4	26	1	0	0	0	0	0	0	0	1	8031	581	21	4		4	JPH2	20	42747215	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2761310	42747215	20278305	1517	43601											
HNF4A	3172	broad.mit.edu	37	chr20	43043117	43043117	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgggagggcccggacatctCcagcattttcttccctgtat	11	13	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43043117	A	A	43043117	1	1	26	0	1	0	0	0	0	0	0	0	7320	870	30	3		3	HNF4A	20	43043117	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	295902	43043117	19982403	1518	43602											
MATN4	8785	broad.mit.edu	37	chr20	43929931	43929931	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcggaggccacagtccaggGtgtggtgggagggtgggggt	22	7	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43929931	C	C	43929931	1	2	26	0	1	0	0	0	0	0	0	0	9428	1276	44	4		4	MATN4	20	43929931	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	886814	43929931	19095589	1519	43603											
MATN4	8785	broad.mit.edu	37	chr20	43933037	43933037	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgggcgcgcgcctgtgcCgccacctcggccacgcggtc	15	20	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43933037	A	A	43933037	2	1	26	1	0	0	0	0	0	0	0	1	9428	639	23	1		1	MATN4	20	43933037	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	3106	43933037	19092483	1520	43604											
MMP9	4318	broad.mit.edu	37	chr20	44641815	44641815	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccagaggaggcttcactgaGaagcttaggggagcagatgt	16	7	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44641815	A	A	44641815	1	1	26	0	1	0	0	0	0	0	0	0	9763	957	33	4		4	MMP9	20	44641815	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	708778	44641815	18383705	1521	43605											
SLC12A5	57468	broad.mit.edu	37	chr20	44663818	44663819	+	Intron	DNP	CC	AA	AA													accttcttccttgagcctccCcatccctccttctccctcct							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44663819	AA	AA	44663818	1	1	26	0	1	0	0	0	0	0	0	0	14499	638	22	2		2	SLC12A5	20	44663818	Intron	DNP	CC	TCGA-05-4432-01A-01D-1265-08	22003	44663818	18361702	1522	43606											
SLC2A10	81031	broad.mit.edu	37	chr20	45353679	45353679	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctcacttttgttttttaGgccactccccacctgtcctg	5	16	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45353679	T	T	45353679	5	4	26	1	0	0	0	0	0	0	1	0	14653	1014	35	2	10	2	SLC2A10	20	45353679	Splice_Site	SNP	G	TCGA-05-4432-01A-01D-1265-08	689861	45353679	17671841	1523	43607											
SLC2A10	81031	broad.mit.edu	37	chr20	45358027	45358027	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggaccttcctgctctacGgactgaccgctgtcctcggc	10	17	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45358027	C	C	45358027	3	2	26	1	0	0	0	0	1	0	0	0	14653	1117	39	4	1461	4	SLC2A10	20	45358027	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4348	45358027	17667493	1524	43608											
SULF2	55959	broad.mit.edu	37	chr20	46305851	46305851	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaagaaggagtcccgccaGaccctcatcttctttttcaa	6	14	4	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46305851	T	T	46305851	2	4	26	1	0	0	0	0	0	0	0	1	15489	929	33	3		3	SULF2	20	46305851	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	947824	46305851	16719669	1525	43609											
KCNB1	3745	broad.mit.edu	37	chr20	48098390	48098390	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagagtcctccagcagtggtCctcaatatggggatgcaagc	12	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48098390	T	T	48098390	1	4	26	0	1	0	0	0	0	0	0	0	8082	870	30	4		4	KCNB1	20	48098390	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1792539	48098390	14927130	1526	43610											
FAM65C	140876	broad.mit.edu	37	chr20	49204077	49204077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaggatgttccgctgaatGggaaccctgccttgcctctg	11	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49204077	T	T	49204077	1	4	26	0	1	0	0	0	0	0	0	0	5652	1363	47	2		2	FAM65C	20	49204077	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1105687	49204077	13821443	1527	43611											
ADNP	23394	broad.mit.edu	37	chr20	49518512	49518512	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctgaaaagggagtataCcaagcatgctgccatctgag	12	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49518512	T	T	49518512	1	4	26	0	1	0	0	0	0	0	0	0	323	522	18	4		4	ADNP	20	49518512	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	314435	49518512	13507008	1528	43612											
ATP9A	10079	broad.mit.edu	37	chr20	50310657	50310657	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccctgtggaaggaagtcGggtgccgtcacctgcacctc	13	13	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50310657	A	A	50310657	1	1	26	0	1	0	0	0	0	0	0	0	1202	1131	39	4		4	ATP9A	20	50310657	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	792145	50310657	12714863	1529	43613											
SALL4	57167	broad.mit.edu	37	chr20	50408003	50408003	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctggaagagcaccgagCccggggcctgaggaagcaaa	16	11	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50408003	T	T	50408003	3	4	26	1	0	0	0	0	1	0	0	0	13924	739	26	4	2154	4	SALL4	20	50408003	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	97346	50408003	12617517	1530	43614											
AURKA	6790	broad.mit.edu	37	chr20	54959254	54959255	+	Intron	INS	-	AA	AA													tttttttccccagagttcccINSacaacgaaatttgcaacgaa							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	54959255	AA	AA	54959254	6	5	26	0	1	1	1	0	0	0	0	0	1226	609	21	0		0	AURKA	20	54959254	Intron	INS	-	TCGA-05-4432-01A-01D-1265-08	4551251	54959254	8066266	1531	43615											
RAE1	8480	broad.mit.edu	37	chr20	55949537	55949537	+	Intron	DEL	G	-	-													tagtttctcttgctatcagcGggcagcagctggaaggaaat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55949537	-	-	55949537	6	5	26	0	1	1	0	1	0	0	0	0	13106	1131	39	0		0	RAE1	20	55949537	Intron	DEL	G	TCGA-05-4432-01A-01D-1265-08	990283	55949537	7075983	1532	43616											
PCK1	5105	broad.mit.edu	37	chr20	56140288	56140289	+	Intron	DEL	GA	-	-													tttctgtgtctgtgtgtgggGagagagagagagagaaagag							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56140289	-	-	56140288	6	5	26	0	1	1	0	1	0	0	0	0	11675	1189	41	0		0	PCK1	20	56140288	Intron	DEL	GA	TCGA-05-4432-01A-01D-1265-08	190751	56140288	6885232	1533	43617											
RAB22A	57403	broad.mit.edu	37	chr20	56928424	56928424	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agactatatagttttctttaGattgttttgaaaactctttt	5	4	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56928424	A	A	56928424	1	1	26	0	1	0	0	0	0	0	0	0	13017	957	33	4		4	RAB22A	20	56928424	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	788136	56928424	6097096	1534	43618											
ATP5E	514	broad.mit.edu	37	chr20	57605303	57605303	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaattattttgatctttaTggtgctccaaaaacttaaga	5	5	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57605303	C	C	57605303	1	2	26	0	1	0	0	0	0	0	0	0	1155	1479	51	5		5	ATP5E	20	57605303	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	676879	57605303	5420217	1535	43619											
ZNF831	128611	broad.mit.edu	37	chr20	57766576	57766576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacatccggtcccacacgGgtgagaggcccttcccgtgt	12	15	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57766576	T	T	57766576	3	4	26	1	0	0	0	0	1	0	0	0	18314	1232	43	2	504	2	ZNF831	20	57766576	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	161273	57766576	5258944	1536	43620											
EDN3	1908	broad.mit.edu	37	chr20	57897533	57897533	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgtgacgtgtcattccttCgggggtgggtggagggtgtt	19	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57897533	T	T	57897533	1	4	26	0	1	0	0	0	0	0	0	0	4958	899	31	4		4	EDN3	20	57897533	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	130957	57897533	5127987	1537	43621											
HRH3	11255	broad.mit.edu	37	chr20	60794655	60794655	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctccggacgcccccttcccAggccgggtcccctggtgggg	15	18	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60794655	T	T	60794655	1	4	26	0	1	0	0	0	0	0	0	0	7424	203	7	5		5	HRH3	20	60794655	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2897122	60794655	2230865	1538	43622											
LAMA5	3911	broad.mit.edu	37	chr20	60888686	60888686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcccctcccaggctgccCcaggccgggcgggctcaccg	15	19	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60888686	A	A	60888686	1	1	26	0	1	0	0	0	0	0	0	0	8681	638	22	2		2	LAMA5	20	60888686	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	94031	60888686	2136834	1539	43623											
DIDO1	11083	broad.mit.edu	37	chr20	61542867	61542867	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccctctcgcttggcgataGtggtccttcgaaaaccccat	9	15	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61542867	A	A	61542867	3	1	26	1	0	0	0	0	1	0	0	0	4562	1029	36	4	6810	4	DIDO1	20	61542867	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	654181	61542867	1482653	1540	43624											
BIRC7	79444	broad.mit.edu	37	chr20	61867856	61867856	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcacgattctggacccttCcagcccagggctctgcctcc	11	17	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61867856	T	T	61867856	1	4	26	0	1	0	0	0	0	0	0	0	1445	870	30	4		4	BIRC7	20	61867856	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	324989	61867856	1157664	1541	43625											
CHRNA4	1137	broad.mit.edu	37	chr20	61990962	61990962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccacgtccgagatgttggCcacgggtcgggaccacttgt	14	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61990962	A	A	61990962	3	1	26	1	0	0	0	0	1	0	0	0	3416	739	26	3	1737	3	CHRNA4	20	61990962	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	123106	61990962	1034558	1542	43626											
CHRNA4	1137	broad.mit.edu	37	chr20	61991018	61991018	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttcttcaggagccgctccTcggcgtgggcccgggtctcc	14	15	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61991018	A	A	61991018	3	1	26	1	0	0	0	0	1	0	0	0	3416	1551	54	5	1793	5	CHRNA4	20	61991018	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	56	61991018	1034502	1543	43627											
ZBTB46	140685	broad.mit.edu	37	chr20	62420982	62420982	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacagggtctccaagggccCtggtgatgccctgccctttg	12	14	1	1	rs146506866	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62420982	T	T	62420982	1	4	26	0	1	0	0	0	0	0	0	0	17673	696	24	4		4	ZBTB46	20	62420982	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	429964	62420982	604538	1544	43628											
ZBTB46	140685	broad.mit.edu	37	chr20	62421331	62421331	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgggctgccaggcatcaccAgcactctgctctgagaaaga	12	12	3	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62421331	T	T	62421331	2	4	26	1	0	0	0	0	0	0	0	1	17673	175	7	5		5	ZBTB46	20	62421331	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	349	62421331	604189	1545	43629											
RGS19	10287	broad.mit.edu	37	chr20	62707771	62707771	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgaggtggcaggggcatCctgcctgcggggatgcctcg	18	11	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62707771	A	A	62707771	1	1	26	0	1	0	0	0	0	0	0	0	13410	870	30	3		3	RGS19	20	62707771	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	286440	62707771	317749	1546	43630											
MYT1	4661	broad.mit.edu	37	chr20	62854570	62854570	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctgggtgcttcgtggTgggtcttcctcctctcctcc	12	15	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62854570	C	C	62854570	1	2	26	0	1	0	0	0	0	0	0	0	10200	1711	59	5		5	MYT1	20	62854570	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	146799	62854570	170950	1547	43631											
TPTE	7179	broad.mit.edu	37	chr21	10910411	10910411	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaagtacctatgaatgaaCacatggaattgagaactata	7	6	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10910411	G	G	10910411	1	3	26	0	1	0	0	0	0	0	0	0	16554	493	17	4		4	TPTE	21	10910411	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08		10910411	37219484	1548	43632											
TPTE	7179	broad.mit.edu	37	chr21	10920156	10920156	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcctttctccaaaataataCaggctttcctacaaaaaagg	5	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10920156	A	A	10920156	2	1	26	1	0	0	0	0	0	0	0	1	16554	465	17	3		3	TPTE	21	10920156	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	9745	10920156	37209739	1549	43633											
TPTE	7179	broad.mit.edu	37	chr21	10971254	10971254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagattacaggtgtgaacCattgcacctggtcatgtgta	10	9	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10971254	A	A	10971254	1	1	26	0	1	0	0	0	0	0	0	0	16554	609	21	2		2	TPTE	21	10971254	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	51098	10971254	37158641	1550	43634											
USP25	29761	broad.mit.edu	37	chr21	17135381	17135381	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttttttttggggtatacCatgtggtagttttagagata	10	2	0	1	rs144301175	by1000genomes	TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17135381	G	G	17135381	1	3	26	0	1	0	0	0	0	0	0	0	17182	609	21	4		4	USP25	21	17135381	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	6164127	17135381	30994514	1551	43635											
TMPRSS15	5651	broad.mit.edu	37	chr21	19685299	19685299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaacatcatttgaaatctGggtggtccagttctcagcac	8	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19685299	T	T	19685299	3	4	26	1	0	0	0	0	1	0	0	0	16369	1357	47	2	963	2	TMPRSS15	21	19685299	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2549918	19685299	28444596	1552	43636											
NCAM2	4685	broad.mit.edu	37	chr21	22881186	22881186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaagacacgctgtttaatGgtcttgggcttggagcagta	12	6	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22881186	T	T	22881186	3	4	26	1	0	0	0	0	1	0	0	0	10298	1348	47	2	2154	2	NCAM2	21	22881186	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3195887	22881186	25248709	1553	43637											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31813044	31813044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcatccaggaatttccaGgcaacttgttactaaccagc	6	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31813044	T	T	31813044	3	4	26	1	0	0	0	0	1	0	0	0	8597	991	35	2	401	2	KRTAP15-1	21	31813044	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	8931858	31813044	16316851	1554	43638											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31813083	31813083	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctttgggtctcgccttttTggatcatcttactgaatatt	8	9	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31813083	C	C	31813083	1	2	26	0	1	0	0	0	0	0	0	0	8597	1827	63	5		5	KRTAP15-1	21	31813083	3'UTR	SNP	T	TCGA-05-4432-01A-01D-1265-08	39	31813083	16316812	1555	43639											
KRTAP21-2	337978	broad.mit.edu	37	chr21	32119528	32119528	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgcaacacatgatttcaGgaggttagatttcagttgag	11	5	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32119528	A	A	32119528	1	1	26	0	1	0	0	0	0	0	0	0	8610	1015	35	4		4	KRTAP21-2	21	32119528	5'Flank	SNP	G	TCGA-05-4432-01A-01D-1265-08	306445	32119528	16010367	1556	43640											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253873	32253873	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagggctgcaggtagcttGctgaagttacctcctgagtt	13	9	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32253873	C	C	32253873	1	2	26	0	1	0	0	0	0	0	0	0	8588	1333	46	4		4	KRTAP11-1	21	32253873	5'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08	134345	32253873	15876022	1557	43641											
IL10RB	3588	broad.mit.edu	37	chr21	34640770	34640770	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaagaacattctacagtggGagtcacctgcttttgccaaa	8	10	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34640770	T	T	34640770	4	4	26	1	0	0	0	0	0	1	0	0	7691	1175	41	3	127	3	IL10RB	21	34640770	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2386897	34640770	13489125	1558	43642											
DYRK1A	1859	broad.mit.edu	37	chr21	38853123	38853123	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataggcaaaggttcctttGgacaggtaatttaatggaaa	11	4	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38853123	T	T	38853123	4	4	26	1	0	0	0	0	0	1	0	0	4894	1349	47	2	525	2	DYRK1A	21	38853123	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	4212353	38853123	9276772	1559	43643											
UBASH3A	53347	broad.mit.edu	37	chr21	43862836	43862836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtggggttttgcagcaGgggagagaggtggggctcaa	20	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43862836	T	T	43862836	1	4	26	0	1	0	0	0	0	0	0	0	16965	1015	35	2		2	UBASH3A	21	43862836	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	5009713	43862836	4267059	1560	43644											
PWP2	5822	broad.mit.edu	37	chr21	45534840	45534840	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgaagtgtgtgctgtggcCgagcctcctgcccctgcact	12	14	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45534840	T	T	45534840	1	4	26	0	1	0	0	0	0	0	0	0	12952	667	23	4		4	PWP2	21	45534840	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1672004	45534840	2595055	1561	43645											
TRPM2	7226	broad.mit.edu	37	chr21	45833845	45833845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcctaagtgccccgagagcGacgcgacgcagcagaggccg	15	14	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45833845	T	T	45833845	3	4	26	1	0	0	0	0	1	0	0	0	16711	1058	37	3	3112	3	TRPM2	21	45833845	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	299005	45833845	2296050	1562	43646											
COL6A1	1291	broad.mit.edu	37	chr21	47407630	47407630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagtgggggtggcaggacCaaagcctcctgggcacccaa	17	11	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47407630	A	A	47407630	1	1	26	0	1	0	0	0	0	0	0	0	3731	609	21	2		2	COL6A1	21	47407630	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1573785	47407630	722265	1563	43647											
COL6A1	1291	broad.mit.edu	37	chr21	47421898	47421898	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccagggcagtcgtacgcGggtgtggtgcagtacagcca	17	10	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47421898	A	A	47421898	2	1	26	1	0	0	0	0	0	0	0	1	3731	1103	39	4		4	COL6A1	21	47421898	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	14268	47421898	707997	1564	43648											
CECR1	51816	broad.mit.edu	37	chr22	17662300	17662300	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcatgggcacatggagctGattcaagaacgagtgagagg	14	6	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17662300	A	A	17662300	1	1	26	0	1	0	0	0	0	0	0	0	3235	1305	45	4		4	CECR1	22	17662300	3'UTR	SNP	G	TCGA-05-4432-01A-01D-1265-08		17662300	33642266	1565	43649											
CLTCL1	8218	broad.mit.edu	37	chr22	19168201	19168201	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggactttgactccctccCtgctccctccccagggggtt	11	16	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19168201	T	T	19168201	1	4	26	0	1	0	0	0	0	0	0	0	3599	696	24	4		4	CLTCL1	22	19168201	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	1505901	19168201	32136365	1566	43650											
CLTCL1	8218	broad.mit.edu	37	chr22	19230160	19230160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttaatcatgtgcatcaCggtgcacagttctcaacacc	6	14	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19230160	A	A	19230160	1	1	26	0	1	0	0	0	0	0	0	0	3599	551	19	3		3	CLTCL1	22	19230160	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	61959	19230160	32074406	1567	43651											
CDC45	8318	broad.mit.edu	37	chr22	19504462	19504462	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactttcccacctgacccttTgaggctattgcaggccctgg	9	15	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19504462	C	C	19504462	1	2	26	0	1	0	0	0	0	0	0	0	3111	1827	63	5		5	CDC45	22	19504462	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	274302	19504462	31800104	1568	43652											
KLHL22	84861	broad.mit.edu	37	chr22	20819222	20819222	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatacgaagttgttgagcacCgcgatgccctggttggacat	12	9	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20819222	A	A	20819222	2	1	26	1	0	0	0	0	0	0	0	1	8448	639	23	1		1	KLHL22	22	20819222	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1314760	20819222	30485344	1569	43653											
PIWIL3	440822	broad.mit.edu	37	chr22	25153864	25153864	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccataaacattgagttctaGaccaacatacctgtttttga	5	9	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25153864	C	C	25153864	1	2	26	0	1	0	0	0	0	0	0	0	12054	957	33	4		4	PIWIL3	22	25153864	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4334642	25153864	26150702	1570	43654											
MYO18B	84700	broad.mit.edu	37	chr22	26164507	26164507	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccaggccagcaccgagatCttggccccgaaagctgagaa	11	14	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26164507	A	A	26164507	2	1	26	1	0	0	0	0	0	0	0	1	10160	903	32	3		3	MYO18B	22	26164507	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	1010643	26164507	25140059	1571	43655											
TCN2	6948	broad.mit.edu	37	chr22	31008836	31008836	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtggcagtttctcacaaAggcattaactggccttgtcc	12	10	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31008836	G	G	31008836	1	3	26	0	1	0	0	0	0	0	0	0	15829	87	3	5		5	TCN2	22	31008836	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	4844329	31008836	20295730	1572	43656											
TCN2	6948	broad.mit.edu	37	chr22	31019151	31019151	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcatcaactcaccccagcTttccctagcaccctcctggg	5	19	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31019151	A	A	31019151	1	1	26	0	1	0	0	0	0	0	0	0	15829	1624	56	5		5	TCN2	22	31019151	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	10315	31019151	20285415	1573	43657											
SMTN	6525	broad.mit.edu	37	chr22	31484883	31484883	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttggctgggaggttgtaCagcgggcgtcccaacagtgg	16	10	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31484883	T	T	31484883	2	4	26	1	0	0	0	0	0	0	0	1	14928	489	17	4		4	SMTN	22	31484883	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	465732	31484883	19819683	1574	43658											
SYN3	8224	broad.mit.edu	37	chr22	33260911	33260911	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcactcaccattggcttAtggttggggaaaaatgtttg	13	6	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33260911	G	G	33260911	2	3	26	1	0	0	0	0	0	0	0	1	15561	446	16	5		5	SYN3	22	33260911	Silent	SNP	A	TCGA-05-4432-01A-01D-1265-08	1776028	33260911	18043655	1575	43659											
HMOX1	3162	broad.mit.edu	37	chr22	35779116	35779116	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcatgccccaggatttgtCagaggccctgaaggaggcca	13	12	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35779116	A	A	35779116	4	1	26	1	0	0	0	0	0	1	0	0	7310	838	29	3	47	3	HMOX1	22	35779116	Nonsense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	2518205	35779116	15525450	1576	43660											
CSF2RB	1439	broad.mit.edu	37	chr22	37326508	37326508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggaaggaggtggccagCtcggtctcctttggcctatt	15	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37326508	A	A	37326508	3	1	26	1	0	0	0	0	1	0	0	0	3969	796	28	3	832	3	CSF2RB	22	37326508	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1547392	37326508	13978058	1577	43661											
TAB1	10454	broad.mit.edu	37	chr22	39822870	39822870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaggacatgaccctgctaGtgaggaactttggctacccg	12	11	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39822870	T	T	39822870	3	4	26	1	0	0	0	0	1	0	0	0	15614	1029	36	3	1118	3	TAB1	22	39822870	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2496362	39822870	11481696	1578	43662											
ENTHD1	150350	broad.mit.edu	37	chr22	40283548	40283548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggatttatacacgtggcGccagttcttcccatggtcat	10	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40283548	A	A	40283548	3	1	26	1	0	0	0	0	1	0	0	0	5179	1087	38	4	1642	4	ENTHD1	22	40283548	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	460678	40283548	11021018	1579	43663											
PNPLA3	80339	broad.mit.edu	37	chr22	44341907	44341907	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaagaagctgtgtctctgGctgtgacggcaccctagagt	13	9	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44341907	A	A	44341907	1	1	26	0	1	0	0	0	0	0	0	0	12261	1218	42	4		4	PNPLA3	22	44341907	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	4058359	44341907	6962659	1580	43664											
PKDREJ	10343	broad.mit.edu	37	chr22	46656286	46656286	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacccacctgtcgtcttcttCaaggacccatcaacctcgct	5	17	4	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46656286	T	T	46656286	2	4	26	1	0	0	0	0	0	0	0	1	12065	825	29	4		4	PKDREJ	22	46656286	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	2314379	46656286	4648280	1581	43665											
GTSE1	51512	broad.mit.edu	37	chr22	46708079	46708079	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtccttccaggacaaaaatCccagctgagaaggaatccca	8	12	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46708079	T	T	46708079	2	4	26	1	0	0	0	0	0	0	0	1	6950	845	30	4		4	GTSE1	22	46708079	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	51793	46708079	4596487	1582	43666											
CELSR1	9620	broad.mit.edu	37	chr22	46794394	46794394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtgaggggcaggcctcCccccgccccccacaaccccc	10	23	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46794394	A	A	46794394	1	1	26	0	1	0	0	0	0	0	0	0	3251	638	22	2		2	CELSR1	22	46794394	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	86315	46794394	4510172	1583	43667											
PLCXD1	55344	broad.mit.edu	37	chrX	215875	215875	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccttccgcggctgagcgCgtgggtccgagagcagtgcc	15	14	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215875	T	T	215875	3	4	26	1	0	0	0	0	1	0	0	0	12136	768	27	4	867	4	PLCXD1	23	215875	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08		215875	155054685	1584	43668											
MXRA5	25878	broad.mit.edu	37	chrX	3248467	3248467	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacctgcaaggacaggggaaAacaaaacaaaacaaaaggat	9	7	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3248467	T	T	3248467	1	4	26	0	1	0	0	0	0	0	0	0	10097	29	1	5		5	MXRA5	23	3248467	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	3032592	3248467	152022093	1585	43669											
MAP3K15	389840	broad.mit.edu	37	chrX	19380754	19380754	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaagtagtctagaatctActggagtcctggattaacag	11	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19380754	C	C	19380754	1	2	26	0	1	0	0	0	0	0	0	0	9341	406	14	5		5	MAP3K15	23	19380754	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	16132287	19380754	135889806	1586	43670											
PTCHD1	139411	broad.mit.edu	37	chrX	23412154	23412154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttctttcactgctttgCcattttacctgtgatactga	5	12	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23412154	A	A	23412154	3	1	26	1	0	0	0	0	1	0	0	0	12838	739	26	3	2529	3	PTCHD1	23	23412154	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	4031400	23412154	131858406	1587	43671											
CXorf21	80231	broad.mit.edu	37	chrX	30578175	30578175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatctctacatatttcaaCtgcagccaagtttgggcttt	8	10	2	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30578175	A	A	30578175	3	1	26	1	0	0	0	0	1	0	0	0	4134	565	20	3	611	3	CXorf21	23	30578175	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	7166021	30578175	124692385	1588	43672											
DMD	1756	broad.mit.edu	37	chrX	32305789	32305789	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaataatgtcaatccgaccTgagctttgttgtagactatc	8	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32305789	A	A	32305789	2	1	26	1	0	0	0	0	0	0	0	1	4620	1567	55	5		5	DMD	23	32305789	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	1727614	32305789	122964771	1589	43673											
FAM47B	170062	broad.mit.edu	37	chrX	34961456	34961456	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggctcgttgtgaggcccggGagaagacaaccgaggtaccc	16	11	0	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961456	T	T	34961456	4	4	26	1	0	0	0	0	0	1	0	0	5621	1175	41	3	510	3	FAM47B	23	34961456	Nonsense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	2655667	34961456	120309104	1590	43674											
CXorf22	170063	broad.mit.edu	37	chrX	35993266	35993266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttcattttttttcagggCcttctgtccttaactttggt	6	9	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35993266	A	A	35993266	3	1	26	1	0	0	0	0	1	0	0	0	4135	739	26	3	2311	3	CXorf22	23	35993266	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1031810	35993266	119277294	1591	43675											
FAM47C	442444	broad.mit.edu	37	chrX	37026518	37026518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgcaggaccggcccagttCcccgggcatggactccacgc	13	18	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37026518	A	A	37026518	3	1	26	1	0	0	0	0	1	0	0	0	5622	855	30	3	37	3	FAM47C	23	37026518	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1033252	37026518	118244042	1592	43676											
SYTL5	94122	broad.mit.edu	37	chrX	37984667	37984667	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcatccatccccaggataTaaagaatgtttgcctagaac	8	10	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37984667	A	A	37984667	3	1	26	1	0	0	0	0	1	0	0	0	15605	1406	49	5	2086	5	SYTL5	23	37984667	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	958149	37984667	117285893	1593	43677											
SRPX	8406	broad.mit.edu	37	chrX	38033550	38033550	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtatcctccttgagggGccctgcagtacacatcccca	9	14	0	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38033550	A	A	38033550	3	1	26	1	0	0	0	0	1	0	0	0	15282	1203	42	4	1214	4	SRPX	23	38033550	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	48883	38033550	117237010	1594	43678											
MAOA	4128	broad.mit.edu	37	chrX	43592152	43592152	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagcaatgatgaataatgCtatcaaaatatataatgttt	5	4	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43592152	T	T	43592152	1	4	26	0	1	0	0	0	0	0	0	0	9317	812	28	4		4	MAOA	23	43592152	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	5558602	43592152	111678408	1595	43679											
SSX3	10214	broad.mit.edu	37	chrX	48206898	48206898	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcataacagaatagcacatcTgcagggatgcaggggatgag	13	7	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48206898	A	A	48206898	1	1	26	0	1	0	0	0	0	0	0	0	15323	1595	55	5		5	SSX3	23	48206898	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	4614746	48206898	107063662	1596	43680											
GRIPAP1	56850	broad.mit.edu	37	chrX	48832429	48832429	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccggggaggggacactgaCcgatccggctgtccatgacg	17	12	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48832429	A	A	48832429	5	1	26	1	0	0	0	0	0	0	1	0	6855	521	18	3	258	3	GRIPAP1	23	48832429	Splice_Site	SNP	C	TCGA-05-4432-01A-01D-1265-08	625531	48832429	106438131	1597	43681											
DGKK	139189	broad.mit.edu	37	chrX	50133404	50133405	+	Missense_Mutation	DNP	CC	AA	AA													gtctcacgaatcatcacactCcatctgaaatgaatttcaaa							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50133405	AA	AA	50133404	3	1	26	1	0	0	0	0	1	0	0	0	4512	856	30	3	2034	3	DGKK	23	50133404	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	1300975	50133404	105137156	1598	43682											
HUWE1	10075	broad.mit.edu	37	chrX	53675171	53675171	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacctttccaatgttccatGttttgatctgctgcagttcc	6	11	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53675171	A	A	53675171	3	1	26	1	0	0	0	0	1	0	0	0	7531	1377	48	4	13316	4	HUWE1	23	53675171	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	3541767	53675171	101595389	1599	43683											
MAGED2	10916	broad.mit.edu	37	chrX	54841039	54841039	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagcctgtccagtctatgcAtgggtaggccatgaatggtc	14	9	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54841039	G	G	54841039	1	3	26	0	1	0	0	0	0	0	0	0	9276	232	8	5		5	MAGED2	23	54841039	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	1165868	54841039	100429521	1600	43684											
PFKFB1	5207	broad.mit.edu	37	chrX	54982528	54982528	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatatttactctaggttctaCaggatatcaaaactgggtga	9	6	3	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54982528	G	G	54982528	1	3	26	0	1	0	0	0	0	0	0	0	11855	493	17	4		4	PFKFB1	23	54982528	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	141489	54982528	100288032	1601	43685											
EFNB1	1947	broad.mit.edu	37	chrX	68060320	68060320	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtaccctggccagtccCaaggggggcagtggcacagc	14	14	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68060320	T	T	68060320	2	4	26	1	0	0	0	0	0	0	0	1	4995	581	21	4		4	EFNB1	23	68060320	Silent	SNP	C	TCGA-05-4432-01A-01D-1265-08	13077792	68060320	87210240	1602	43686											
KIAA2022	340533	broad.mit.edu	37	chrX	73960665	73960665	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggtttggcttcccccacGgccaatgccaatttgcattt	9	12	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73960665	A	A	73960665	3	1	26	1	0	0	0	0	1	0	0	0	8339	1116	39	4	831	4	KIAA2022	23	73960665	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	5900345	73960665	81309895	1603	43687											
MAGT1	84061	broad.mit.edu	37	chrX	77109370	77109370	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaacagacaaaatacaGcaagaaagacttattgtaaa	7	5	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77109370	A	A	77109370	1	1	26	0	1	0	0	0	0	0	0	0	9288	986	34	4		4	MAGT1	23	77109370	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	3148705	77109370	78161190	1604	43688											
P2RY10	27334	broad.mit.edu	37	chrX	78216969	78216969	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttcgtgaccaactatccCgccatggcagttctgtgacc	9	13	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78216969	T	T	78216969	3	4	26	1	0	0	0	0	1	0	0	0	11441	652	23	4	954	4	P2RY10	23	78216969	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	1107599	78216969	77053591	1605	43689											
PABPC5	140886	broad.mit.edu	37	chrX	90691098	90691098	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcggctcaacaaccgccaGgtgtatgttggcagattcaa	12	10	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90691098	A	A	90691098	2	1	26	1	0	0	0	0	0	0	0	1	11461	991	35	4		4	PABPC5	23	90691098	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	12474129	90691098	64579462	1606	43690											
PCDH11X	27328	broad.mit.edu	37	chrX	91368619	91368619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtccaccttcctccggGtattgatgaagatgactgcc	10	13	0	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91368619	T	T	91368619	1	4	26	0	1	0	0	0	0	0	0	0	11602	1276	44	3		3	PCDH11X	23	91368619	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	677521	91368619	63901941	1607	43691											
BTK	695	broad.mit.edu	37	chrX	100630242	100630242	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctgttgggatcgcttcaGaaagatgctctccagaatca	9	9	4	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100630242	C	C	100630242	3	2	26	1	0	0	0	0	1	0	0	0	1567	933	33	4	2020	4	BTK	23	100630242	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08	9261623	100630242	54640318	1608	43692											
ZMAT1	84460	broad.mit.edu	37	chrX	101138621	101138621	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttttttcgatgcttaAgctttcctgaactgaccttg	6	9	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101138621	C	C	101138621	3	2	26	1	0	0	0	0	1	0	0	0	17817	72	3	5	142	5	ZMAT1	23	101138621	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	508379	101138621	54131939	1609	43693											
IL1RAPL2	26280	broad.mit.edu	37	chrX	103903796	103903796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcactcgtattccagttaTgttggaaagtagccaaaata	8	7	0	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103903796	A	A	103903796	1	1	26	0	1	0	0	0	0	0	0	0	7732	1479	51	5		5	IL1RAPL2	23	103903796	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2765175	103903796	51366764	1610	43694											
COL4A5	1287	broad.mit.edu	37	chrX	107938500	107938500	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccttgtcttttatagcatAcaagtgcaggggcagaaggc	11	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107938500	T	T	107938500	3	4	26	1	0	0	0	0	1	0	0	0	3726	391	14	5	5016	5	COL4A5	23	107938500	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	4034704	107938500	47332060	1611	43695											
CHRDL1	91851	broad.mit.edu	37	chrX	109931883	109931883	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctattttttgaggatacttGcaggggtatcgattggggca	13	5	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109931883	A	A	109931883	2	1	26	1	0	0	0	0	0	0	0	1	3404	1311	46	4		4	CHRDL1	23	109931883	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1993383	109931883	45338677	1612	43696											
ZCCHC16	340595	broad.mit.edu	37	chrX	111625389	111625389	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcataatcagtgcctaaataGgatgttccaaagaccacacc	6	11	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111625389	C	C	111625389	1	2	26	0	1	0	0	0	0	0	0	0	17710	1015	35	4		4	ZCCHC16	23	111625389	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1693506	111625389	43645171	1613	43697											
IL13RA2	3598	broad.mit.edu	37	chrX	114242485	114242485	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatttagttactgtcctttTagctcataccttcccagcat	4	11	1	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114242485	C	C	114242485	1	2	26	0	1	0	0	0	0	0	0	0	7700	1769	61	5		5	IL13RA2	23	114242485	Intron	SNP	T	TCGA-05-4432-01A-01D-1265-08	2617096	114242485	41028075	1614	43698											
LRCH2	57631	broad.mit.edu	37	chrX	114357412	114357412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaccccatccatcagtgCagctccaatgtcatcaggca	6	15	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114357412	A	A	114357412	3	1	26	1	0	0	0	0	1	0	0	0	9020	710	25	3	298	3	LRCH2	23	114357412	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	114927	114357412	40913148	1615	43699											
ATP1B4	23439	broad.mit.edu	37	chrX	119504510	119504510	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttctggttcatgagtccaAgcagggaggaagagcttgtt	14	6	2	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119504510	T	T	119504510	1	4	26	0	1	0	0	0	0	0	0	0	1139	87	3	5		5	ATP1B4	23	119504510	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	5147098	119504510	35766050	1616	43700											
LAMP2	3920	broad.mit.edu	37	chrX	119575734	119575734	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagtagctgagattgttaTttgcaatgctgaaaacttca	8	8	1	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119575734	A	A	119575734	3	1	26	1	0	0	0	0	1	0	0	0	8690	1493	52	5	587	5	LAMP2	23	119575734	Missense_Mutation	SNP	T	TCGA-05-4432-01A-01D-1265-08	71224	119575734	35694826	1617	43701											
CT47B1	643311	broad.mit.edu	37	chrX	120008644	120008644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacccgaggccccgacCccccttcaccacccgcttca	5	24	3	0			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120008644	A	A	120008644	1	1	26	0	1	0	0	0	0	0	0	0	4023	638	22	2		2	CT47B1	23	120008644	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	432910	120008644	35261916	1618	43702											
IGSF1	3547	broad.mit.edu	37	chrX	130409258	130409258	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggctgggtttggggagtaAgcctggaagaaatgaactcc	15	6	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130409258	C	C	130409258	3	2	26	1	0	0	0	0	1	0	0	0	7666	69	3	5	839	5	IGSF1	23	130409258	Missense_Mutation	SNP	A	TCGA-05-4432-01A-01D-1265-08	10400614	130409258	24861302	1619	43703											
GPC3	2719	broad.mit.edu	37	chrX	132896979	132896979	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctacatcctaaatctgaagAggacctgggagaatcttctg	9	9	4	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132896979	G	G	132896979	1	3	26	0	1	0	0	0	0	0	0	0	6664	319	11	5		5	GPC3	23	132896979	Intron	SNP	A	TCGA-05-4432-01A-01D-1265-08	2487721	132896979	22373581	1620	43704											
GPR112	139378	broad.mit.edu	37	chrX	135427278	135427278	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatcattcccacctgagccTgtgctcatctccacagctgc	6	17	4	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135427278	A	A	135427278	2	1	26	1	0	0	0	0	0	0	0	1	6694	1567	55	5		5	GPR112	23	135427278	Silent	SNP	T	TCGA-05-4432-01A-01D-1265-08	2530299	135427278	19843282	1621	43705											
GPR112	139378	broad.mit.edu	37	chrX	135431636	135431637	+	Missense_Mutation	DNP	CC	AA	AA													gcctttgtcaacattcacagCctctcagactggtctagtat							TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	135431637	AA	AA	135431636	3	1	26	1	0	0	0	0	1	0	0	0	6694	739	26	3	5781	3	GPR112	23	135431636	Missense_Mutation	DNP	CC	TCGA-05-4432-01A-01D-1265-08	4358	135431636	19838924	1622	43706											
CD40LG	959	broad.mit.edu	37	chrX	135732340	135732340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcctcctcttgttgatgcCgtggaaatgaatgtagaggc	12	8	1	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135732340	A	A	135732340	1	1	26	0	1	0	0	0	0	0	0	0	3046	667	23	1		1	CD40LG	23	135732340	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	300704	135732340	19538220	1623	43707											
MAGEC1	9947	broad.mit.edu	37	chrX	140996176	140996176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgagcagggcatgtccCagaaccgcctcctgattctt	11	12	1	4			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140996176	A	A	140996176	3	1	26	1	0	0	0	0	1	0	0	0	9272	595	21	2	2992	2	MAGEC1	23	140996176	Missense_Mutation	SNP	C	TCGA-05-4432-01A-01D-1265-08	5263836	140996176	14274384	1624	43708											
PASD1	139135	broad.mit.edu	37	chrX	150844445	150844445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agactctagcaaacattccaCcttgtttcactttttcctgg	5	12	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150844445	T	T	150844445	1	4	26	0	1	0	0	0	0	0	0	0	11565	522	18	4		4	PASD1	23	150844445	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	9848269	150844445	4426115	1625	43709											
FATE1	89885	broad.mit.edu	37	chrX	150885995	150885995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggaggaggaagctcctGtgctccaagctggcaaatga	15	8	0	2			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150885995	T	T	150885995	1	4	26	0	1	0	0	0	0	0	0	0	5750	1392	48	3		3	FATE1	23	150885995	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	41550	150885995	4384565	1626	43710											
GABRA3	2556	broad.mit.edu	37	chrX	151393489	151393489	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatgaactagatagcctctCaaagaggcattaagtactca	7	8	2	3			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151393489	G	G	151393489	1	3	26	0	1	0	0	0	0	0	0	0	6222	841	29	4		4	GABRA3	23	151393489	Intron	SNP	C	TCGA-05-4432-01A-01D-1265-08	507494	151393489	3877071	1627	43711											
PDZD4	57595	broad.mit.edu	37	chrX	153069795	153069795	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcgctggccgccaggtcGtagaggctctcctcctccag	13	16	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153069795	A	A	153069795	2	1	26	1	0	0	0	0	0	0	0	1	11797	1140	40	4		4	PDZD4	23	153069795	Silent	SNP	G	TCGA-05-4432-01A-01D-1265-08	1676306	153069795	2200765	1628	43712											
RPL10	6134	broad.mit.edu	37	chrX	153627776	153627776	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcactggttggctctgcGgactccgcgtccgtctgtga	13	14	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153627776	T	T	153627776	1	4	26	0	1	0	0	0	0	0	0	0	13665	1131	39	1		1	RPL10	23	153627776	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	557981	153627776	1642784	1629	43713											
TMLHE	55217	broad.mit.edu	37	chrX	154744018	154744018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaagaatctttttcctaGcaatcagttatccagtactg	6	8	2	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154744018	T	T	154744018	1	4	26	0	1	0	0	0	0	0	0	0	16355	986	34	3		3	TMLHE	23	154744018	Intron	SNP	G	TCGA-05-4432-01A-01D-1265-08	1116242	154744018	526542	1630	43714											
RPS4Y1	6192	broad.mit.edu	37	chrY	2712266	2712266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaattgatggcaaggttcGagtggatgtcacataccctg	11	8	1	1			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2712266	T	T	2712266	3	4	26	1	0	0	0	0	1	0	0	0	13757	1058	37	3	240	3	RPS4Y1	24	2712266	Missense_Mutation	SNP	G	TCGA-05-4432-01A-01D-1265-08		2712266	56661300	1631	43715											
EPHA8	2046	broad.mit.edu	37	chr1	22927332	22927332	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagccctggcaggtccgcgGgcggtggagcctcagggtgc	18	13	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22927332	A	A	22927332	1	1	27	0	1	0	0	0	0	0	0	0	5215	1247	43	4		4	EPHA8	1	22927332	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08		22927332	226323289	1	43716											
C1QB	713	broad.mit.edu	37	chr1	22987946	22987946	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactctacccccaacaccAccccttgcccaaccaatgca	2	22	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22987946	C	C	22987946	1	2	27	0	1	0	0	0	0	0	0	0	1975	174	6	5		5	C1QB	1	22987946	3'UTR	SNP	A	TCGA-05-4433-01A-22D-1855-08	60614	22987946	226262675	2	43717											
TIE1	7075	broad.mit.edu	37	chr1	43777199	43777199	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctacccaggggcctgaactCtgtcctccctgggccctggc	12	17	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43777199	T	T	43777199	1	4	27	0	1	0	0	0	0	0	0	0	16016	928	32	4		4	TIE1	1	43777199	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	20789253	43777199	205473422	3	43718											
TAL1	6886	broad.mit.edu	37	chr1	47685806	47685806	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgccgccatcgctcccgGctgttggtgaagatacgccg	13	14	0	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47685806	A	A	47685806	2	1	27	1	0	0	0	0	0	0	0	1	15660	1194	42	4		4	TAL1	1	47685806	Silent	SNP	G	TCGA-05-4433-01A-22D-1855-08	3908607	47685806	201564815	4	43719											
CNN3	1266	broad.mit.edu	37	chr1	95363438	95363438	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcctgttccttggcttcCgttgtgaatgacaggttctg	11	9	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95363438	A	A	95363438	4	1	27	1	0	0	0	0	0	1	0	0	3643	661	23	1	143	1	CNN3	1	95363438	Nonsense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	47677632	95363438	153887183	5	43720											
NBPF9	400818	broad.mit.edu	37	chr1	145112277	145112277	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtgctgggattacaggtgTgagccaccgtgcctggccaa	14	10	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145112277	A	A	145112277	1	1	27	0	1	0	0	0	0	0	0	0	10294	1711	59	5		5	NBPF9	1	145112277	Intron	SNP	T	TCGA-05-4433-01A-22D-1855-08	49748839	145112277	104138344	6	43721											
LCE4A	199834	broad.mit.edu	37	chr1	152681756	152681756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacagacaccataggtccCactgccacagacccaagagc	7	17	0	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152681756	A	A	152681756	3	1	27	1	0	0	0	0	1	0	0	0	8746	594	21	2	207	2	LCE4A	1	152681756	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	7569479	152681756	96568865	7	43722											
RAG1AP1	55974	broad.mit.edu	37	chr1	155108457	155108457	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcacccttggcatgttcTccgccggcctgtgagagtgc	11	14	3	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155108457	G	G	155108457	3	3	27	1	0	0	0	0	1	0	0	0	13112	1551	54	5	72	5	RAG1AP1	1	155108457	Missense_Mutation	SNP	T	TCGA-05-4433-01A-22D-1855-08	2426701	155108457	94142164	8	43723											
KDM5B	10765	broad.mit.edu	37	chr1	202699065	202699065	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcttaactcgttcccaccGctcactggagaggccctctc	7	16	3	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202699065	C	C	202699065	3	2	27	1	0	0	0	0	1	0	0	0	8204	1086	38	4	375	4	KDM5B	1	202699065	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	47590608	202699065	46551556	9	43724											
USH2A	7399	broad.mit.edu	37	chr1	215823979	215823979	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagaacagcctgtagagActgacgatcccgttgggctt	13	10	0	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215823979	G	G	215823979	2	3	27	1	0	0	0	0	0	0	0	1	17162	272	10	5		5	USH2A	1	215823979	Silent	SNP	A	TCGA-05-4433-01A-22D-1855-08	13124914	215823979	33426642	10	43725											
AGT	183	broad.mit.edu	37	chr1	230841597	230841597	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacccaaggctcagctcagGtgtgtctactccccaccccg	9	18	3	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230841597	A	A	230841597	1	1	27	0	1	0	0	0	0	0	0	0	399	1276	44	4		4	AGT	1	230841597	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	15017618	230841597	18409024	11	43726											
PCNXL2	80003	broad.mit.edu	37	chr1	233225886	233225886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagaaatgggctcaatgGggtagaaaagattgatgtgg	14	5	1	4			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233225886	T	T	233225886	3	4	27	1	0	0	0	0	1	0	0	0	11686	1232	43	2	2464	2	PCNXL2	1	233225886	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	2384289	233225886	16024735	12	43727											
KIAA1804	84451	broad.mit.edu	37	chr1	233482122	233482122	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagattgtgttttacatgcCacagaaaaattgtgacagaa	9	5	0	4			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233482122	T	T	233482122	1	4	27	0	1	0	0	0	0	0	0	0	8329	609	21	4		4	KIAA1804	1	233482122	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	256236	233482122	15768499	13	43728											
GPR45	11250	broad.mit.edu	37	chr2	105859409	105859409	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaagcacagtctacgtgtGcaatgaaaaccagtctgcgg	11	11	2	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105859409	A	A	105859409	3	1	27	1	0	0	0	0	1	0	0	0	6761	1319	46	4	1096	4	GPR45	2	105859409	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08		105859409	137339964	14	43729											
LIMS1	3987	broad.mit.edu	37	chr2	109278678	109278678	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttctcccattttgcctgtGacttaggaacgaacatgatg	8	10	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109278678	C	C	109278678	1	2	27	0	1	0	0	0	0	0	0	0	8875	1305	45	4		4	LIMS1	2	109278678	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	3419269	109278678	133920695	15	43730											
INHBB	3625	broad.mit.edu	37	chr2	121107519	121107519	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttcttccagcccccgCgggaacgggggtacacggtg	16	13	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121107519	T	T	121107519	1	4	27	0	1	0	0	0	0	0	0	0	7812	783	27	4		4	INHBB	2	121107519	3'UTR	SNP	C	TCGA-05-4433-01A-22D-1855-08	11828841	121107519	122091854	16	43731											
CYTIP	9595	broad.mit.edu	37	chr2	158291128	158291128	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagagagagagagagagAggaagagagaggaaaaaaca	17	1	0	7			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158291128	G	G	158291128	1	3	27	0	1	0	0	0	0	0	0	0	4240	319	11	5		5	CYTIP	2	158291128	Intron	SNP	A	TCGA-05-4433-01A-22D-1855-08	37183609	158291128	84908245	17	43732											
PLCL1	5334	broad.mit.edu	37	chr2	198950357	198950357	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgcgagatgaagtttctTacttcagcgcaaatacaaag	8	7	2	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198950357	G	G	198950357	3	3	27	1	0	0	0	0	1	0	0	0	12134	1754	61	5	2122	5	PLCL1	2	198950357	Missense_Mutation	SNP	T	TCGA-05-4433-01A-22D-1855-08	40659229	198950357	44249016	18	43733											
ERBB4	2066	broad.mit.edu	37	chr2	212538081	212538081	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctattggcagagtaaattCtaaagtttgtttctctatgt	7	6	2	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212538081	A	A	212538081	1	1	27	0	1	0	0	0	0	0	0	0	5251	928	32	3		3	ERBB4	2	212538081	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	13587724	212538081	30661292	19	43734											
CRYBG3	131544	broad.mit.edu	37	chr3	97634316	97634317	+	Intron	INS	-	T	T													ggtagctgttgtgttttttgINStttttttaaagctggtgtgg							TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97634317	T	T	97634316	6	5	27	0	1	1	1	0	0	0	0	0	3945	1392	48	0		0	CRYBG3	3	97634316	Intron	INS	-	TCGA-05-4433-01A-22D-1855-08		97634316	100388114	20	43735											
XRN1	54464	broad.mit.edu	37	chr3	142137373	142137373	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacgtcaacccccatcttcGtcatgtaatatgttctttta	4	12	4	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142137373	A	A	142137373	3	1	27	1	0	0	0	0	1	0	0	0	17586	1145	40	4	3925	4	XRN1	3	142137373	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	44503057	142137373	55885057	21	43736											
KIT	3815	broad.mit.edu	37	chr4	55598210	55598211	+	Intron	DEL	GA	-	-													gttttgtgttttgtttttttGattttttttttttttttttt					rs71662297		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55598211	-	-	55598210	6	5	27	0	1	1	0	1	0	0	0	0	8400	1305	45	0		0	KIT	4	55598210	Intron	DEL	GA	TCGA-05-4433-01A-22D-1855-08		55598210	135556066	22	43737											
CXCL6	6372	broad.mit.edu	37	chr4	74702790	74702790	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgttccccgcaggcccGcagtgctccaaggtggaagt	14	13	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74702790	A	A	74702790	2	1	27	1	0	0	0	0	0	0	0	1	4121	1074	38	4		4	CXCL6	4	74702790	Silent	SNP	G	TCGA-05-4433-01A-22D-1855-08	19104580	74702790	116451486	23	43738											
NAA11	84779	broad.mit.edu	37	chr4	80246366	80246366	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggtggaatccgagctttcTgagctgtcctggacgttggt	15	8	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80246366	C	C	80246366	2	2	27	1	0	0	0	0	0	0	0	1	10211	1567	55	5		5	NAA11	4	80246366	Silent	SNP	T	TCGA-05-4433-01A-22D-1855-08	5543576	80246366	110907910	24	43739											
CDS1	1040	broad.mit.edu	37	chr4	85552877	85552877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtagctaaaatatgcctaGctgtgatacagcaaattggt	9	6	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85552877	T	T	85552877	1	4	27	0	1	0	0	0	0	0	0	0	3207	986	34	3		3	CDS1	4	85552877	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	5306511	85552877	105601399	25	43740											
DKK2	27123	broad.mit.edu	37	chr4	107846995	107846995	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagcacatgccatctcGgtggcagcgcttcttttttc	12	12	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107846995	A	A	107846995	4	1	27	1	0	0	0	0	0	1	0	0	4585	1124	39	4	457	4	DKK2	4	107846995	Nonsense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	22294118	107846995	83307281	26	43741											
METTL14	57721	broad.mit.edu	37	chr4	119626806	119626806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggaactgtgaagcgtaGcacagacggggacttcattc	12	9	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119626806	T	T	119626806	3	4	27	1	0	0	0	0	1	0	0	0	9591	971	34	3	934	3	METTL14	4	119626806	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	11779811	119626806	71527470	27	43742											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903839	190903839	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacgttgctgtaaactgctCtgagacccgcttgagttcct	10	11	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190903839	A	A	190903839	4	1	27	1	0	0	0	0	0	1	0	0	16885	922	32	3	163	3	TUBB4Q	4	190903839	Nonsense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	71277033	190903839	250437	28	43743											
FSTL4	23105	broad.mit.edu	37	chr5	132736615	132736615	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctgctgagcacgcacCggctccctcggctgcagaac	10	17	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132736615	T	T	132736615	3	4	27	1	0	0	0	0	1	0	0	0	6139	652	23	4	2356	4	FSTL4	5	132736615	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08		132736615	48178645	29	43744											
DIAPH1	1729	broad.mit.edu	37	chr5	140966598	140966598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcaacattttgggaatGggaaacttaccagcatctgt	10	7	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140966598	T	T	140966598	1	4	27	0	1	0	0	0	0	0	0	0	4558	1363	47	2		2	DIAPH1	5	140966598	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	8229983	140966598	39948662	30	43745											
NRN1	51299	broad.mit.edu	37	chr6	6006965	6006965	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagtgaaatatatctgccGttcaacttaagtcccatcct	5	11	3	1	rs144443923		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6006965	A	A	6006965	2	1	27	1	0	0	0	0	0	0	0	1	10753	1136	40	4		4	NRN1	6	6006965	Silent	SNP	G	TCGA-05-4433-01A-22D-1855-08		6006965	165108102	31	43746											
DDR1	780	broad.mit.edu	37	chr6	30860994	30860994	+	Intron	DEL	C	-	-													gcacccttctccctgggcctCcccctcggctagggtgggac							TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30860994	-	-	30860994	6	5	27	0	1	1	0	1	0	0	0	0	4369	870	30	0		0	DDR1	6	30860994	Intron	DEL	C	TCGA-05-4433-01A-22D-1855-08	24854029	30860994	140254073	32	43747											
TNXB	7148	broad.mit.edu	37	chr6	32015500	32015501	+	Intron	INS	-	T	T													ggaaaaggtggaggctggacINStgggactcacctgtggtgct							TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32015501	T	T	32015500	6	5	27	0	1	1	1	0	0	0	0	0	16469	580	20	0		0	TNXB	6	32015500	Intron	INS	-	TCGA-05-4433-01A-22D-1855-08	1154506	32015500	139099567	33	43748											
OPN5	221391	broad.mit.edu	37	chr6	47754126	47754126	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttaatttagattttttTatttagagtcctctcactac	3	8	2	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47754126	A	A	47754126	1	1	27	0	1	0	0	0	0	0	0	0	10977	1769	61	5		5	OPN5	6	47754126	Intron	SNP	T	TCGA-05-4433-01A-22D-1855-08	15738626	47754126	123360941	34	43749											
SLC35F1	222553	broad.mit.edu	37	chr6	118320121	118320121	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaggcacttcgggagccgCggcttatggtgcagacatgg	15	10	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118320121	T	T	118320121	1	4	27	0	1	0	0	0	0	0	0	0	14702	783	27	4		4	SLC35F1	6	118320121	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	70565995	118320121	52794946	35	43750											
FAM184A	79632	broad.mit.edu	37	chr6	119295858	119295858	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatagaaaatttatgtaaaCagcctaaattaagctactta	4	5	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119295858	T	T	119295858	1	4	27	0	1	0	0	0	0	0	0	0	5557	493	17	4		4	FAM184A	6	119295858	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	975737	119295858	51819209	36	43751											
NUP43	348995	broad.mit.edu	37	chr6	150057671	150057671	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctaacatcccaaatactCaacattccatcttggccacc	3	15	3	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150057671	A	A	150057671	3	1	27	1	0	0	0	0	1	0	0	0	10860	825	29	3	428	3	NUP43	6	150057671	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	30761813	150057671	21057396	37	43752											
ZNF479	90827	broad.mit.edu	37	chr7	57194477	57194477	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacacaagcacttaccacaCggccataggcagagattttt	7	12	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57194477	T	T	57194477	1	4	27	0	1	0	0	0	0	0	0	0	18060	551	19	4		4	ZNF479	7	57194477	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08		57194477	101944186	38	43753											
TMEM130	222865	broad.mit.edu	37	chr7	98452829	98452829	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggatgtgcagagcccacGgggcacccccagtgcgctct	16	14	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98452829	A	A	98452829	1	1	27	0	1	0	0	0	0	0	0	0	16166	1131	39	4		4	TMEM130	7	98452829	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	41258352	98452829	60685834	39	43754											
PLXNA4	91584	broad.mit.edu	37	chr7	131815342	131815342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccaaggatctgcggaaGggccaagaacagggagatta	15	7	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131815342	T	T	131815342	1	4	27	0	1	0	0	0	0	0	0	0	12217	1015	35	2		2	PLXNA4	7	131815342	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	33362513	131815342	27323321	40	43755											
GIMAP7	168537	broad.mit.edu	37	chr7	150210546	150210546	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaactgtccaataagttGtaatattgggatgccggaaa	10	5	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150210546	T	T	150210546	1	4	27	0	1	0	0	0	0	0	0	0	6448	1392	48	3		3	GIMAP7	7	150210546	5'Flank	SNP	G	TCGA-05-4433-01A-22D-1855-08	18395204	150210546	8928117	41	43756											
KCNH2	3757	broad.mit.edu	37	chr7	150649481	150649481	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acattcctggcctctcctctCcctacaccacctgcctcctt	3	21	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150649481	G	G	150649481	1	3	27	0	1	0	0	0	0	0	0	0	8102	870	30	4		4	KCNH2	7	150649481	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	438935	150649481	8489182	42	43757											
ADAM9	8754	broad.mit.edu	37	chr8	38959519	38959519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgtctaataatttcccCtgtattttaatgtaatttag	4	5	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38959519	A	A	38959519	1	1	27	0	1	0	0	0	0	0	0	0	253	696	24	2		2	ADAM9	8	38959519	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08		38959519	107404503	43	43758											
MCM4	4173	broad.mit.edu	37	chr8	48887526	48887526	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctattcttactacgggttCgttattttcagtgaacagaa	7	7	3	2	rs17287739		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48887526	A	A	48887526	1	1	27	0	1	0	0	0	0	0	0	0	9482	899	31	3		3	MCM4	8	48887526	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	9928007	48887526	97476496	44	43759											
CLVS1	157807	broad.mit.edu	37	chr8	62371045	62371045	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcctataatgcaatgcaCgtgaagcatacgtcctcgaa	7	11	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62371045	T	T	62371045	2	4	27	1	0	0	0	0	0	0	0	1	3603	535	19	4		4	CLVS1	8	62371045	Silent	SNP	C	TCGA-05-4433-01A-22D-1855-08	13483519	62371045	83992977	45	43760											
ZHX1	11244	broad.mit.edu	37	chr8	124266480	124266480	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttctctttaaacttttgGggagtaaagtcaggaaaagg	11	4	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124266480	T	T	124266480	2	4	27	1	0	0	0	0	0	0	0	1	17801	1219	43	2		2	ZHX1	8	124266480	Silent	SNP	G	TCGA-05-4433-01A-22D-1855-08	61895435	124266480	22097542	46	43761											
HSF1	3297	broad.mit.edu	37	chr8	145534983	145534983	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccccacaagggccggggTaactgtgtcctctctctcca	12	15	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145534983	G	G	145534983	1	3	27	0	1	0	0	0	0	0	0	0	7462	1653	57	5		5	HSF1	8	145534983	Intron	SNP	T	TCGA-05-4433-01A-22D-1855-08	21268503	145534983	829039	47	43762											
DGAT1	8694	broad.mit.edu	37	chr8	145540826	145540827	+	Intron	DEL	CA	-	-													ttcacagccatgttccacatCacacacacacacaccccacc							TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145540827	-	-	145540826	6	5	27	0	1	1	0	1	0	0	0	0	4497	841	29	0		0	DGAT1	8	145540826	Intron	DEL	CA	TCGA-05-4433-01A-22D-1855-08	5843	145540826	823196	48	43763											
CBWD1	55871	broad.mit.edu	37	chr9	164038	164038	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacatagaagccactgcacCtgaaaatatataatattcat	4	8	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164038	G	G	164038	5	3	27	1	0	0	0	0	0	0	1	0	2738	695	24	4	801	4	CBWD1	9	164038	Splice_Site	SNP	C	TCGA-05-4433-01A-22D-1855-08		164038	141049393	49	43764											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18675909	18675909	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccatccccttcctcggtaCgtaaatcaatcatcctgatg	5	14	2	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18675909	T	T	18675909	1	4	27	0	1	0	0	0	0	0	0	0	274	551	19	4		4	ADAMTSL1	9	18675909	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	18511871	18675909	122537522	50	43765											
CDKN2A	1029	broad.mit.edu	37	chr9	21971111	21971111	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctcccgggcagcgtcgtGcacgggtcgggtgagagtgg	19	12	0	1	rs121913385		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21971111	A	A	21971111	3	1	27	1	0	0	0	0	1	0	0	0	3191	1319	46	4	231	4	CDKN2A	9	21971111	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	3295202	21971111	119242320	51	43766											
FBXO10	26267	broad.mit.edu	37	chr9	37541161	37541161	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcagaactagaaaggccgtCtattgatgtggatacccacc	10	10	2	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37541161	G	G	37541161	1	3	27	0	1	0	0	0	0	0	0	0	5783	928	32	4		4	FBXO10	9	37541161	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	15570050	37541161	103672270	52	43767											
FBXO10	26267	broad.mit.edu	37	chr9	37541372	37541372	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggaagagcacaattcggtCatacaggctggccatggcca	13	10	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37541372	G	G	37541372	3	3	27	1	0	0	0	0	1	0	0	0	5783	826	29	4	2516	4	FBXO10	9	37541372	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	211	37541372	103672059	53	43768											
FAM75A2	642265	broad.mit.edu	37	chr9	39361018	39361018	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaggagcaaactggtgcacGaggagcccagaaacccaaac	12	11	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39361018	A	A	39361018	3	1	27	1	0	0	0	0	1	0	0	0	5671	1059	37	4	3270	4	FAM75A2	9	39361018	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	1819646	39361018	101852413	54	43769											
ROD1	9991	broad.mit.edu	37	chr9	115095151	115095151	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtccagacccctggtgtcGagaaagcgttaacgtatctc	10	11	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115095151	T	T	115095151	1	4	27	0	1	0	0	0	0	0	0	0	13630	1073	37	3		3	ROD1	9	115095151	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	75734133	115095151	26118280	55	43770											
SURF4	6836	broad.mit.edu	37	chr9	136233501	136233501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctatgattccaaagagccCgaagcaggcgtactgcacga	11	11	0	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136233501	A	A	136233501	3	1	27	1	0	0	0	0	1	0	0	0	15523	652	23	1	539	1	SURF4	9	136233501	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	21138350	136233501	4979930	56	43771											
UPF2	26019	broad.mit.edu	37	chr10	11973641	11973641	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttatagatgattttataccTtgataatcttcttgttcttg	5	6	3	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11973641	A	A	11973641	3	1	27	1	0	0	0	0	1	0	0	0	17130	1623	56	5	143	5	UPF2	10	11973641	Missense_Mutation	SNP	T	TCGA-05-4433-01A-22D-1855-08		11973641	123561106	57	43772											
C10orf114	399726	broad.mit.edu	37	chr10	21784478	21784478	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaatgtcattctggtcGttcctccctgaagcgggact	10	10	2	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21784478	C	C	21784478	1	2	27	0	1	0	0	0	0	0	0	0	1596	1160	40	4		4	C10orf114	10	21784478	3'UTR	SNP	G	TCGA-05-4433-01A-22D-1855-08	9810837	21784478	113750269	58	43773											
KIAA0913	23053	broad.mit.edu	37	chr10	75550806	75550807	+	Frame_Shift_Ins	INS	-	T	T													ggcatgtctgctgcgccctcINStgaggggccgtgagccagag							TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75550807	T	T	75550806	7	5	27	1	0	1	1	0	0	0	0	0	8270	912	32	0	1045	0	KIAA0913	10	75550806	Frame_Shift_Ins	INS	-	TCGA-05-4433-01A-22D-1855-08	53766328	75550806	59983941	59	43774											
HMX2	3167	broad.mit.edu	37	chr10	124907981	124907981	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtccatcctgggcgggggCccctcggaggcaccgcggga	17	15	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124907981	T	T	124907981	2	4	27	1	0	0	0	0	0	0	0	1	7314	726	26	4		4	HMX2	10	124907981	Silent	SNP	C	TCGA-05-4433-01A-22D-1855-08	49357175	124907981	10626766	60	43775											
C10orf137	26098	broad.mit.edu	37	chr10	127426974	127426974	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcctcaagagggggtccCgaggggctagagaagcagat	16	8	1	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127426974	T	T	127426974	2	4	27	1	0	0	0	0	0	0	0	1	1605	639	23	4		4	C10orf137	10	127426974	Silent	SNP	C	TCGA-05-4433-01A-22D-1855-08	2518993	127426974	8107773	61	43776											
DENND5A	23258	broad.mit.edu	37	chr11	9166648	9166648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacagtagtaagcttccCcaagttctggcactattaga	9	10	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9166648	A	A	9166648	3	1	27	1	0	0	0	0	1	0	0	0	4476	623	22	2	871	2	DENND5A	11	9166648	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08		9166648	125839868	62	43777											
OR8H1	219469	broad.mit.edu	37	chr11	56058356	56058356	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgacaagtgagtaaggaaAaaatacatgggagtgtgaag	13	2	0	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56058356	G	G	56058356	2	3	27	1	0	0	0	0	0	0	0	1	11331	11	1	5		5	OR8H1	11	56058356	Silent	SNP	A	TCGA-05-4433-01A-22D-1855-08	46891708	56058356	78948160	63	43778											
NDUFV1	4723	broad.mit.edu	37	chr11	67378532	67378532	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcccccacaatctgccGccgtggaggtacctggtttg	12	13	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67378532	A	A	67378532	3	1	27	1	0	0	0	0	1	0	0	0	10394	1087	38	4	789	4	NDUFV1	11	67378532	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	11320176	67378532	67627984	64	43779											
SIK2	23235	broad.mit.edu	37	chr11	111591374	111591374	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcccttcataagcctgagAcctaccaacccagccatgca	5	17	2	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111591374	T	T	111591374	3	4	27	1	0	0	0	0	1	0	0	0	14431	272	10	5	1710	5	SIK2	11	111591374	Missense_Mutation	SNP	A	TCGA-05-4433-01A-22D-1855-08	44212842	111591374	23415142	65	43780											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	27	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08		25398284	108453611	66	43781											
ADAMTS20	80070	broad.mit.edu	37	chr12	43837660	43837660	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacgtttgttgctcctgCgggaatctttacaacaacat	8	10	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43837660	T	T	43837660	3	4	27	1	0	0	0	0	1	0	0	0	266	768	27	4	3603	4	ADAMTS20	12	43837660	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	18439376	43837660	90014235	67	43782											
SLC11A2	4891	broad.mit.edu	37	chr12	51393019	51393019	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgcttctagcttccGcaagcctaaaggaaaaaagg	8	8	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51393019	A	A	51393019	3	1	27	1	0	0	0	0	1	0	0	0	14494	1086	38	4	1190	4	SLC11A2	12	51393019	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	7555359	51393019	82458876	68	43783											
IRAK3	11213	broad.mit.edu	37	chr12	66621892	66621892	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctggaattaaaaataggtTttggaaaaccaaaacgttga	8	4	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66621892	G	G	66621892	1	3	27	0	1	0	0	0	0	0	0	0	7894	1856	64	5		5	IRAK3	12	66621892	Intron	SNP	T	TCGA-05-4433-01A-22D-1855-08	15228873	66621892	67230003	69	43784											
CDK17	5128	broad.mit.edu	37	chr12	96694172	96694172	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaaaatgtagtatttaCtttttttttttttttttgag	5	1	0	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96694172	T	T	96694172	1	4	27	0	1	0	0	0	0	0	0	0	3163	580	20	4		4	CDK17	12	96694172	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	30072280	96694172	37157723	70	43785											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124218407	124218407	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaacgctttgacagtgtttGagctgccgaagttctagaag	12	7	1	4			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124218407	A	A	124218407	1	1	27	0	1	0	0	0	0	0	0	0	1173	1305	45	4		4	ATP6V0A2	12	124218407	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	27524235	124218407	9633488	71	43786											
POLE	5426	broad.mit.edu	37	chr12	133201441	133201449	+	Intron	DEL	AGGAGGCCA	-	-													agaccccagtccactcagagAggaggccaaggaggccaggc					rs5745082		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133201449	-	-	133201441	6	5	27	0	1	1	0	1	0	0	0	0	12291	319	11	0		0	POLE	12	133201441	Intron	DEL	AGGAGGCCA	TCGA-05-4433-01A-22D-1855-08	8983034	133201441	650454	72	43787											
SLITRK1	114798	broad.mit.edu	37	chr13	84453707	84453707	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtctcttggaccgctttcGgttcctcaggataaacacga	9	12	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84453707	T	T	84453707	2	4	27	1	0	0	0	0	0	0	0	1	14856	1124	39	1		1	SLITRK1	13	84453707	Silent	SNP	G	TCGA-05-4433-01A-22D-1855-08		84453707	30716171	73	43788											
FARP1	10160	broad.mit.edu	37	chr13	98896791	98896791	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaccggctcctcctggaCgggttgggtactgagatgct	14	12	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98896791	T	T	98896791	1	4	27	0	1	0	0	0	0	0	0	0	5733	536	19	4		4	FARP1	13	98896791	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	14443084	98896791	16273087	74	43789											
ERCC5	2073	broad.mit.edu	37	chr13	103514715	103514715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgtaaaagtgtgtgctGgggatgatgtgcagacggga	17	3	0	3	rs145157335		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103514715	T	T	103514715	3	4	27	1	0	0	0	0	1	0	0	0	5258	1348	47	2	1246	2	ERCC5	13	103514715	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	4617924	103514715	11655163	75	43790											
COL4A2	1284	broad.mit.edu	37	chr13	111090845	111090845	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagttgagcatcgccaggcGgtctggacaccatcggggct	15	11	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111090845	A	A	111090845	1	1	27	0	1	0	0	0	0	0	0	0	3722	1131	39	4		4	COL4A2	13	111090845	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	7576130	111090845	4079033	76	43791											
COL4A2	1284	broad.mit.edu	37	chr13	111154090	111154090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttccaacatctctggggCacctggtgacaaaggggcgc	12	14	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111154090	T	T	111154090	3	4	27	1	0	0	0	0	1	0	0	0	3722	710	25	4	3994	4	COL4A2	13	111154090	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	63245	111154090	4015788	77	43792											
NEDD8	4738	broad.mit.edu	37	chr14	24687421	24687421	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgctccttgattcgctccaCctttagagagacaagtagtc	8	12	0	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24687421	T	T	24687421	3	4	27	1	0	0	0	0	1	0	0	0	10407	521	18	4	186	4	NEDD8	14	24687421	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08		24687421	82662119	78	43793											
DIO2	1734	broad.mit.edu	37	chr14	80672113	80672113	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggaaagttaccaaattcGtaatgctctttatggggggg	12	5	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80672113	A	A	80672113	1	1	27	0	1	0	0	0	0	0	0	0	4565	1160	40	4		4	DIO2	14	80672113	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	55984692	80672113	26677427	79	43794											
HERC2	8924	broad.mit.edu	37	chr15	28421942	28421942	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacaaatttaaaaacagaAtcacgcacaggcacggagaa	7	8	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28421942	G	G	28421942	1	3	27	0	1	0	0	0	0	0	0	0	7125	116	4	5		5	HERC2	15	28421942	Intron	SNP	A	TCGA-05-4433-01A-22D-1855-08		28421942	74109450	80	43795											
MTMR15	22909	broad.mit.edu	37	chr15	31220869	31220874	+	Intron	DEL	TGCCCC	-	-													acgcctgtcaggtactccagTgcccctgccccacgagtagg							TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31220874	-	-	31220869	6	5	27	0	1	1	0	1	0	0	0	0	10037	1711	59	0		0	MTMR15	15	31220869	Intron	DEL	TGCCCC	TCGA-05-4433-01A-22D-1855-08	2798927	31220869	71310523	81	43796											
EIF2AK4	440275	broad.mit.edu	37	chr15	40284374	40284374	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggcttacttatatttttAggctgacagcaaacaagacg	8	7	0	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40284374	G	G	40284374	5	3	27	1	0	0	0	0	0	0	1	0	5039	434	15	5	2696	5	EIF2AK4	15	40284374	Splice_Site	SNP	A	TCGA-05-4433-01A-22D-1855-08	9063505	40284374	62247018	82	43797											
DUOX2	50506	broad.mit.edu	37	chr15	45405197	45405197	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacgcaccaacagcaccacGctcgtggtgcctcaggttgt	11	14	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45405197	A	A	45405197	3	1	27	1	0	0	0	0	1	0	0	0	4841	1087	38	4	4626	4	DUOX2	15	45405197	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	5120823	45405197	57126195	83	43798											
SLC30A4	7782	broad.mit.edu	37	chr15	45814448	45814448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaaagcccctcgtccccCgcctcatccgagaagtcaaa	8	17	2	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45814448	A	A	45814448	2	1	27	1	0	0	0	0	0	0	0	1	14671	639	23	1		1	SLC30A4	15	45814448	Silent	SNP	C	TCGA-05-4433-01A-22D-1855-08	409251	45814448	56716944	84	43799											
ANKDD1A	348094	broad.mit.edu	37	chr15	65208038	65208038	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacgaggccgcccgccagaAcaatgtcggcaggatgcagg	14	14	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65208038	G	G	65208038	3	3	27	1	0	0	0	0	1	0	0	0	624	43	2	5	83	5	ANKDD1A	15	65208038	Missense_Mutation	SNP	A	TCGA-05-4433-01A-22D-1855-08	19393590	65208038	37323354	85	43800											
DENND4A	10260	broad.mit.edu	37	chr15	66044844	66044844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatgttttcagaggctcttCggtaagtgatataaattctt	8	6	4	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66044844	A	A	66044844	3	1	27	1	0	0	0	0	1	0	0	0	4473	884	31	3	5406	3	DENND4A	15	66044844	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	836806	66044844	36486548	86	43801											
CHRNB4	1143	broad.mit.edu	37	chr15	78927768	78927768	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctgagccacagctgcCctctgcacctaccacgctga	9	17	1	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78927768	T	T	78927768	1	4	27	0	1	0	0	0	0	0	0	0	3424	638	22	4		4	CHRNB4	15	78927768	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	12882924	78927768	23603624	87	43802											
MEX3B	84206	broad.mit.edu	37	chr15	82336228	82336228	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttattgtttccgttgtgcGcaaagctcagggcggggcta	14	8	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82336228	A	A	82336228	3	1	27	1	0	0	0	0	1	0	0	0	9603	1087	38	4	730	4	MEX3B	15	82336228	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	3408460	82336228	20195164	88	43803											
PCSK6	5046	broad.mit.edu	37	chr15	101971641	101971641	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggacattcatttccgaccGgcagcgactgttcttgtcgc	10	13	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101971641	A	A	101971641	3	1	27	1	0	0	0	0	1	0	0	0	11698	1115	39	4	2923	4	PCSK6	15	101971641	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	19635413	101971641	559751	89	43804											
MEFV	4210	broad.mit.edu	37	chr16	3304666	3304666	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagctccgcccccgtaCggccgagggccgttcccctc	12	20	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3304666	T	T	3304666	2	4	27	1	0	0	0	0	0	0	0	1	9552	523	19	4		4	MEFV	16	3304666	Silent	SNP	C	TCGA-05-4433-01A-22D-1855-08		3304666	87050087	90	43805											
UBN1	29855	broad.mit.edu	37	chr16	4920917	4920917	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaagaagatgaagaaaaAgggggcaggaggataatggg	19	1	0	4			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4920917	G	G	4920917	2	3	27	1	0	0	0	0	0	0	0	1	17018	69	3	5		5	UBN1	16	4920917	Silent	SNP	A	TCGA-05-4433-01A-22D-1855-08	1616251	4920917	85433836	91	43806											
UBFD1	56061	broad.mit.edu	37	chr16	23569456	23569456	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccgcagcccaggcctcgGtcagcaacggcgaagacgcg	13	17	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23569456	A	A	23569456	3	1	27	1	0	0	0	0	1	0	0	0	17010	1261	44	4	217	4	UBFD1	16	23569456	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	18648539	23569456	66785297	92	43807											
ZNF668	79759	broad.mit.edu	37	chr16	31073700	31073700	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctccccaaacgttcgtGggggcctaggcttaatcccc	13	14	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31073700	A	A	31073700	1	1	27	0	1	0	0	0	0	0	0	0	18202	1363	47	4		4	ZNF668	16	31073700	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	7504244	31073700	59281053	93	43808											
GNAO1	2775	broad.mit.edu	37	chr16	56374946	56374946	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccgagggagcgggccccGttcccaaagcccagtccacc	11	20	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56374946	A	A	56374946	1	1	27	0	1	0	0	0	0	0	0	0	6572	1160	40	4		4	GNAO1	16	56374946	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	25301246	56374946	33979807	94	43809											
BBS2	583	broad.mit.edu	37	chr16	56536033	56536034	+	Intron	DEL	AG	-	-													ggaaatgtccttaaacaatcAggaaaacatttctacagttt							TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56536034	-	-	56536033	6	5	27	0	1	1	0	1	0	0	0	0	1343	203	7	0		0	BBS2	16	56536033	Intron	DEL	AG	TCGA-05-4433-01A-22D-1855-08	161087	56536033	33818720	95	43810											
EDC4	23644	broad.mit.edu	37	chr16	67912194	67912194	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggtaaggcagggcctcAgggaccaggatcctcccgag	14	13	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67912194	G	G	67912194	1	3	27	0	1	0	0	0	0	0	0	0	4948	203	7	5		5	EDC4	16	67912194	Intron	SNP	A	TCGA-05-4433-01A-22D-1855-08	11376161	67912194	22442559	96	43811											
PRMT7	54496	broad.mit.edu	37	chr16	68389759	68389759	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcccctgcagcccctgtGtgccgagggcaccgtggagc	16	15	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68389759	A	A	68389759	3	1	27	1	0	0	0	0	1	0	0	0	12647	1377	48	4	1842	4	PRMT7	16	68389759	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	477565	68389759	21964994	97	43812											
TP53	7157	broad.mit.edu	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578263	A	A	7578263	4	1	27	1	0	0	0	0	0	1	0	0	16505	1124	39	4	708	4	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08		7578263	73616947	98	43813											
TOM1L2	146691	broad.mit.edu	37	chr17	17788167	17788167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggcccacgtcctctcccCgagaccagtgctctcctact	8	18	2	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17788167	A	A	17788167	1	1	27	0	1	0	0	0	0	0	0	0	16476	667	23	1		1	TOM1L2	17	17788167	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	10209904	17788167	63407043	99	43814											
DSG4	147409	broad.mit.edu	37	chr18	28991295	28991295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccgttggcctcatggccGcaggggccgcaggagcctca	15	15	2	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28991295	A	A	28991295	3	1	27	1	0	0	0	0	1	0	0	0	4819	1087	38	4	2418	4	DSG4	18	28991295	Missense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08		28991295	49085953	100	43815											
ZNF236	7776	broad.mit.edu	37	chr18	74625671	74625671	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaattgtgctatgaattaaCgtggtctgagttctgtatgt	11	4	2	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74625671	G	G	74625671	1	3	27	0	1	0	0	0	0	0	0	0	17915	551	19	4		4	ZNF236	18	74625671	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	45634376	74625671	3451577	101	43816											
ATP8B3	148229	broad.mit.edu	37	chr19	1789738	1789738	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgtcctggccggcggGgagggggctgtgccaggcgc	20	11	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1789738	C	C	1789738	1	2	27	0	1	0	0	0	0	0	0	0	1200	1247	43	4		4	ATP8B3	19	1789738	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08		1789738	57339245	102	43817											
SLC5A5	6528	broad.mit.edu	37	chr19	17992969	17992969	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactacagcactcatctacGgatcggcctgtctcaccgtg	8	16	3	0	rs121909180		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17992969	T	T	17992969	4	4	27	1	0	0	0	0	0	1	0	0	14782	1117	39	1	1221	1	SLC5A5	19	17992969	Nonsense_Mutation	SNP	G	TCGA-05-4433-01A-22D-1855-08	16203231	17992969	41136014	103	43818											
ZNF536	9745	broad.mit.edu	37	chr19	30935693	30935693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaacaagtcccccagcgaCcccgaggtgcctgtgcccat	10	16	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30935693	A	A	30935693	3	1	27	1	0	0	0	0	1	0	0	0	18101	506	18	3	1226	3	ZNF536	19	30935693	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	12942724	30935693	28193290	104	43819											
CYP2A6	1548	broad.mit.edu	37	chr19	41351918	41351918	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagcgcagggtggtgctgaCggtctcggtgcccccaatga	15	11	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41351918	T	T	41351918	3	4	27	1	0	0	0	0	1	0	0	0	4195	536	19	4	584	4	CYP2A6	19	41351918	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	10416225	41351918	17777065	105	43820											
FOSB	2354	broad.mit.edu	37	chr19	45973796	45973796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccctgtgctcactcacGgggtcggtgtgtgttatgtg	13	11	3	0	rs149541859	by1000genomes	TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45973796	T	T	45973796	1	4	27	0	1	0	0	0	0	0	0	0	6044	1131	39	1		1	FOSB	19	45973796	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	4621878	45973796	13155187	106	43821											
JAG1	182	broad.mit.edu	37	chr20	10637059	10637060	+	Frame_Shift_Ins	INS	-	GA	GA													atttacctgcagtcacctggINSgagtttgcaagacccatgct					rs34271232		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	10637060	GA	GA	10637059	7	5	27	1	0	1	1	0	0	0	0	0	8004	1232	43	0	3002	0	JAG1	20	10637059	Frame_Shift_Ins	INS	-	TCGA-05-4433-01A-22D-1855-08		10637059	52388461	107	43822											
DNMT3B	1789	broad.mit.edu	37	chr20	31374365	31374365	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggcacaggccttccccaCgttccacccgaggccggcag	12	17	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31374365	T	T	31374365	3	4	27	1	0	0	0	0	1	0	0	0	4717	536	19	4	418	4	DNMT3B	20	31374365	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	20737306	31374365	31651155	108	43823											
MYH7B	57644	broad.mit.edu	37	chr20	33570262	33570262	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtttgtgtcgtccaagCggagagtcgggggccggtaa	16	8	1	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33570262	T	T	33570262	2	4	27	1	0	0	0	0	0	0	0	1	10134	782	27	4		4	MYH7B	20	33570262	Silent	SNP	C	TCGA-05-4433-01A-22D-1855-08	2195897	33570262	29455258	109	43824											
RBM39	9584	broad.mit.edu	37	chr20	34295150	34295150	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaagagaaaaattagtTtcatggaaaatgcatgaaag	9	2	1	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34295150	C	C	34295150	1	2	27	0	1	0	0	0	0	0	0	0	13241	1856	64	5		5	RBM39	20	34295150	Intron	SNP	T	TCGA-05-4433-01A-22D-1855-08	724888	34295150	28730370	110	43825											
PREX1	57580	broad.mit.edu	37	chr20	47269940	47269940	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccggaatgcctggaagtgctCcaggacctcaggggcaccat	13	13	1	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47269940	A	A	47269940	4	1	27	1	0	0	0	0	0	1	0	0	12582	864	30	3	2758	3	PREX1	20	47269940	Nonsense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08	12974790	47269940	15755580	111	43826											
MORC3	23515	broad.mit.edu	37	chr21	37741350	37741350	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaatcggagattgagtagtCagtttgaaaattcagtttat	10	3	2	4			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37741350	G	G	37741350	3	3	27	1	0	0	0	0	1	0	0	0	9797	827	29	4	1742	4	MORC3	21	37741350	Missense_Mutation	SNP	C	TCGA-05-4433-01A-22D-1855-08		37741350	10388545	112	43827											
TMPRSS3	64699	broad.mit.edu	37	chr21	43796590	43796590	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacagggaaacgctggcaacGacctgtcccaagggctgggt	14	12	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43796590	C	C	43796590	1	2	27	0	1	0	0	0	0	0	0	0	16371	1073	37	4		4	TMPRSS3	21	43796590	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08	6055240	43796590	4333305	113	43828											
COL6A2	1292	broad.mit.edu	37	chr21	47544502	47544502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggacagcacagggggcCctgctgtgtgcagggactgt	18	9	0	0			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47544502	A	A	47544502	1	1	27	0	1	0	0	0	0	0	0	0	3732	638	22	2		2	COL6A2	21	47544502	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	3747912	47544502	585393	114	43829											
FBXO7	25793	broad.mit.edu	37	chr22	32871329	32871329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcgcgggtggtcggctgGggtccggctcctggagaaca	19	10	0	1			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32871329	T	T	32871329	1	4	27	0	1	0	0	0	0	0	0	0	5817	1247	43	2		2	FBXO7	22	32871329	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08		32871329	18433237	115	43830											
CSF2RB	1439	broad.mit.edu	37	chr22	37319417	37319417	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgggtgaatgagtgagtgAtgctgggggcaggggccacg	21	7	0	4			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37319417	G	G	37319417	1	3	27	0	1	0	0	0	0	0	0	0	3969	348	12	5		5	CSF2RB	22	37319417	Intron	SNP	A	TCGA-05-4433-01A-22D-1855-08	4448088	37319417	13985149	116	43831											
NAGA	4668	broad.mit.edu	37	chr22	42456899	42456899	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaaatctgaagcccaggCgggtggctgcaggcagccgg	16	11	1	2			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42456899	T	T	42456899	1	4	27	0	1	0	0	0	0	0	0	0	10235	783	27	4		4	NAGA	22	42456899	Intron	SNP	C	TCGA-05-4433-01A-22D-1855-08	5137482	42456899	8847667	117	43832											
PPP2R3B	28227	broad.mit.edu	37	chrX	307900	307900	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagacgccggccctcccatGaggcatgcggtgtagacgcg	15	13	0	3			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	307900	A	A	307900	1	1	27	0	1	0	0	0	0	0	0	0	12490	1305	45	4		4	PPP2R3B	23	307900	Intron	SNP	G	TCGA-05-4433-01A-22D-1855-08		307900	154962660	118	43833											
DACH2	117154	broad.mit.edu	37	chrX	86087200	86087200	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatgaagatgcttgtgatTccagtttatctctgaaacta	7	6	1	4			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86087200	C	C	86087200	1	2	27	0	1	0	0	0	0	0	0	0	4254	1798	62	5		5	DACH2	23	86087200	3'UTR	SNP	T	TCGA-05-4433-01A-22D-1855-08	85779300	86087200	69183360	119	43834											
HSPG2	3339	broad.mit.edu	37	chr1	22172821	22172821	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaggcctggggccagggtCtaacctctgacacagggggg	17	10	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22172821	G	G	22172821	1	3	28	0	1	0	0	0	0	0	0	0	7500	928	32	4		4	HSPG2	1	22172821	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08		22172821	227077800	1	43835											
HSPG2	3339	broad.mit.edu	37	chr1	22173765	22173765	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgcctgagtaccaccaggtCtgaggactctgacctgaaag	11	11	2	4			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22173765	T	T	22173765	1	4	28	0	1	0	0	0	0	0	0	0	7500	928	32	4		4	HSPG2	1	22173765	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	944	22173765	227076856	2	43836											
IL28RA	163702	broad.mit.edu	37	chr1	24484026	24484026	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctggcccagcttctgtctGaagaatcccaagcagaggag	12	11	2	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24484026	A	A	24484026	3	1	28	1	0	0	0	0	1	0	0	0	7754	1294	45	4	409	4	IL28RA	1	24484026	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	2310261	24484026	224766595	3	43837											
WASF2	10163	broad.mit.edu	37	chr1	27745418	27745418	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaattctacaaaactgctCagcagagcctgcaaatgctg	7	10	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27745418	G	G	27745418	1	3	28	0	1	0	0	0	0	0	0	0	17380	841	29	4		4	WASF2	1	27745418	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	3261392	27745418	221505203	4	43838											
WDR65	149465	broad.mit.edu	37	chr1	43665047	43665047	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgcttgctctcttgctGtctttccctatagtgttcct	7	12	2	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43665047	A	A	43665047	1	1	28	0	1	0	0	0	0	0	0	0	17443	1392	48	4		4	WDR65	1	43665047	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	15919629	43665047	205585574	5	43839											
ITLN1	55600	broad.mit.edu	37	chr1	160849221	160849221	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccctgaaaacaagaggcaGaaaacagcattcaaggaaga	9	9	1	4			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160849221	A	A	160849221	1	1	28	0	1	0	0	0	0	0	0	0	7980	957	33	4		4	ITLN1	1	160849221	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	117184174	160849221	88401400	6	43840											
ALDH9A1	223	broad.mit.edu	37	chr1	165664744	165664748	+	Intron	DEL	TTTTC	-	-													ctttttttttttttttttttTtttcttgagatggagtcttg					rs143194829		TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165664748	-	-	165664744	6	5	28	0	1	1	0	1	0	0	0	0	506	1856	64	0		0	ALDH9A1	1	165664744	Intron	DEL	TTTTC	TCGA-05-4434-01A-01D-1265-08	4815523	165664744	83585877	7	43841											
PFKFB2	5208	broad.mit.edu	37	chr1	207241415	207241415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccttacagaccaagttaGcaggctttgtgtatgtgtgt	11	8	0	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207241415	T	T	207241415	1	4	28	0	1	0	0	0	0	0	0	0	11856	986	34	3		3	PFKFB2	1	207241415	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	41576671	207241415	42009206	8	43842											
PLXNA2	5362	broad.mit.edu	37	chr1	208219159	208219159	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagaaagaaagtcaggccagGagcgaggggcgccctctggc	16	10	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	208219159	C	C	208219159	1	2	28	0	1	0	0	0	0	0	0	0	12215	1189	41	4		4	PLXNA2	1	208219159	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	977744	208219159	41031462	9	43843											
NVL	4931	broad.mit.edu	37	chr1	224477242	224477242	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggactcctttagatgGcaaatcttccatttcaggat	7	11	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224477242	A	A	224477242	3	1	28	1	0	0	0	0	1	0	0	0	10875	1203	42	4	1095	4	NVL	1	224477242	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	16258083	224477242	24773379	10	43844											
ASAP2	8853	broad.mit.edu	37	chr2	9496288	9496288	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtggaatttaacacagCgttgctcttgtttttctaga	9	6	2	1	rs141664050	by1000genomes	TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9496288	T	T	9496288	1	4	28	0	1	0	0	0	0	0	0	0	1015	783	27	4		4	ASAP2	2	9496288	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08		9496288	233703085	11	43845											
ROCK2	9475	broad.mit.edu	37	chr2	11448173	11448173	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagaggtgacccggagtcTgctgcagcgctggggcgcca	17	12	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11448173	G	G	11448173	1	3	28	0	1	0	0	0	0	0	0	0	13629	1595	55	5		5	ROCK2	2	11448173	Intron	SNP	T	TCGA-05-4434-01A-01D-1265-08	1951885	11448173	231751200	12	43846											
CAD	790	broad.mit.edu	37	chr2	27462316	27462316	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccgtgtggtcctgcgagggGaggttgcctatatcgatggg	18	8	0	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462316	A	A	27462316	3	1	28	1	0	0	0	0	1	0	0	0	2591	1175	41	4	5501	4	CAD	2	27462316	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	16014143	27462316	215737057	13	43847											
ZNF638	27332	broad.mit.edu	37	chr2	71654583	71654583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtctttctgttttatgagGggattacatttaaaattaat	7	3	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71654583	T	T	71654583	1	4	28	0	1	0	0	0	0	0	0	0	18182	1247	43	2		2	ZNF638	2	71654583	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	44192267	71654583	171544790	14	43848											
LRRTM4	80059	broad.mit.edu	37	chr2	77745685	77745685	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcaccaagaggatcatgGccactgagagaaagagagcc	12	9	2	5			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745685	A	A	77745685	3	1	28	1	0	0	0	0	1	0	0	0	9129	1203	42	4	476	4	LRRTM4	2	77745685	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	6091102	77745685	165453688	15	43849											
CHN1	1123	broad.mit.edu	37	chr2	175742790	175742790	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcgtggatggactcaaaGcgtttctccccaacaaagtg	10	10	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175742790	A	A	175742790	2	1	28	1	0	0	0	0	0	0	0	1	3393	958	34	4		4	CHN1	2	175742790	Silent	SNP	G	TCGA-05-4434-01A-01D-1265-08	97997105	175742790	67456583	16	43850											
BCS1L	617	broad.mit.edu	37	chr2	219528122	219528122	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggtgatcaggctgggctCagctcagctctcctcctcta	12	13	5	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219528122	A	A	219528122	1	1	28	0	1	0	0	0	0	0	0	0	1394	841	29	3		3	BCS1L	2	219528122	3'UTR	SNP	C	TCGA-05-4434-01A-01D-1265-08	43785332	219528122	23671251	17	43851											
OXTR	5021	broad.mit.edu	37	chr3	8809556	8809556	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcacagcaggtcgggcccGtagaagcggaaggtgatgtc	17	10	0	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8809556	A	A	8809556	2	1	28	1	0	0	0	0	0	0	0	1	11432	1140	40	4		4	OXTR	3	8809556	Silent	SNP	G	TCGA-05-4434-01A-01D-1265-08		8809556	189212874	18	43852											
RBM5	10181	broad.mit.edu	37	chr3	50146865	50146865	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatatcacatctagtagAattataagaaaatgaaaatg	6	3	2	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50146865	T	T	50146865	1	4	28	0	1	0	0	0	0	0	0	0	13251	261	9	5		5	RBM5	3	50146865	Intron	SNP	A	TCGA-05-4434-01A-01D-1265-08	41337309	50146865	147875565	19	43853											
C3orf17	25871	broad.mit.edu	37	chr3	112727277	112727277	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttaaaatcaaaactggtctCctgaaacgtggaaagatgag	9	6	2	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112727277	T	T	112727277	3	4	28	1	0	0	0	0	1	0	0	0	2232	869	30	4	735	4	C3orf17	3	112727277	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	62580412	112727277	85295153	20	43854											
PARP9	83666	broad.mit.edu	37	chr3	122274901	122274901	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgacgctcattatttttTaaaattttgaagtcattgtg	7	5	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122274901	A	A	122274901	3	1	28	1	0	0	0	0	1	0	0	0	11560	1751	61	5	2427	5	PARP9	3	122274901	Missense_Mutation	SNP	T	TCGA-05-4434-01A-01D-1265-08	9547624	122274901	75747529	21	43855											
PARP14	54625	broad.mit.edu	37	chr3	122418783	122418783	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcactactcaaaaaattaAaagggaagagcaaagtttga	8	5	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122418783	G	G	122418783	3	3	28	1	0	0	0	0	1	0	0	0	11552	14	1	5	1404	5	PARP14	3	122418783	Missense_Mutation	SNP	A	TCGA-05-4434-01A-01D-1265-08	143882	122418783	75603647	22	43856											
SGEF	26084	broad.mit.edu	37	chr3	153839648	153839648	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcctgcgcagcagcaggggGaccgccggtctgggagcacg	18	13	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153839648	A	A	153839648	1	1	28	0	1	0	0	0	0	0	0	0	14318	1189	41	4		4	SGEF	3	153839648	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	31420865	153839648	44182782	23	43857											
APOD	347	broad.mit.edu	37	chr3	195295724	195295724	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggggggggtaggggaaagcGaagcagaagtaacatggagt	21	3	0	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195295724	A	A	195295724	1	1	28	0	1	0	0	0	0	0	0	0	803	1073	37	4		4	APOD	3	195295724	3'UTR	SNP	G	TCGA-05-4434-01A-01D-1265-08	41456076	195295724	2726706	24	43858											
RPL9	6133	broad.mit.edu	37	chr4	39457937	39457937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaaacacaaaacaacagCcaactaaagtatggaagttg	7	9	0	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39457937	A	A	39457937	1	1	28	0	1	0	0	0	0	0	0	0	13714	754	26	3		3	RPL9	4	39457937	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08		39457937	151696339	25	43859											
SULT1B1	27284	broad.mit.edu	37	chr4	70620398	70620398	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatttacctgatgttctTaatccagggagagtcatttc	7	7	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70620398	A	A	70620398	3	1	28	1	0	0	0	0	1	0	0	0	15494	1751	61	5	647	5	SULT1B1	4	70620398	Missense_Mutation	SNP	T	TCGA-05-4434-01A-01D-1265-08	31162461	70620398	120533878	26	43860											
C4orf21	55345	broad.mit.edu	37	chr4	113486303	113486303	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcgctccgtgaaattagaTgttatcagaagtccactgaa	10	8	1	4			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113486303	C	C	113486303	1	2	28	0	1	0	0	0	0	0	0	0	2277	1479	51	5		5	C4orf21	4	113486303	Intron	SNP	T	TCGA-05-4434-01A-01D-1265-08	42865905	113486303	77667973	27	43861											
GRIA2	2891	broad.mit.edu	37	chr4	158142087	158142087	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcttggtgctaaattgctGtctcaaaatgcagaggatct	10	8	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158142087	C	C	158142087	1	2	28	0	1	0	0	0	0	0	0	0	6834	1392	48	4		4	GRIA2	4	158142087	5'UTR	SNP	G	TCGA-05-4434-01A-01D-1265-08	44655784	158142087	33012189	28	43862											
RANBP3L	202151	broad.mit.edu	37	chr5	36255723	36255723	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttttaaaatgtcaaataTatagaaaattttttcaaagt	3	2	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36255723	C	C	36255723	1	2	28	0	1	0	0	0	0	0	0	0	13138	1421	49	5		5	RANBP3L	5	36255723	Intron	SNP	T	TCGA-05-4434-01A-01D-1265-08		36255723	144659537	29	43863											
MCCC2	64087	broad.mit.edu	37	chr5	70930879	70930879	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaattggatgtgagtacgAtatgttcttatatcttttat	8	3	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70930879	T	T	70930879	1	4	28	0	1	0	0	0	0	0	0	0	9468	348	12	5		5	MCCC2	5	70930879	Intron	SNP	A	TCGA-05-4434-01A-01D-1265-08	34675156	70930879	109984381	30	43864											
RASA1	5921	broad.mit.edu	37	chr5	86676295	86676295	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagtgttttcacttgctttCtgtgttgagatgattgtgtt	10	5	3	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86676295	T	T	86676295	1	4	28	0	1	0	0	0	0	0	0	0	13168	928	32	4		4	RASA1	5	86676295	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	15745416	86676295	94238965	31	43865											
PCDHB7	56129	broad.mit.edu	37	chr5	140554534	140554534	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctctcggtgctcctgttCgtggcggtgcggctgtgcag	15	13	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140554534	T	T	140554534	2	4	28	1	0	0	0	0	0	0	0	1	11641	883	31	4		4	PCDHB7	5	140554534	Silent	SNP	C	TCGA-05-4434-01A-01D-1265-08	53878239	140554534	40360726	32	43866											
PCDHGA6	56109	broad.mit.edu	37	chr5	140755505	140755505	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagccaggacttttctcaGtgggcctgcacacgggcgag	15	12	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140755505	A	A	140755505	3	1	28	1	0	0	0	0	1	0	0	0	11652	1029	36	4	1857	4	PCDHGA6	5	140755505	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	200971	140755505	40159755	33	43867											
FOXF2	2295	broad.mit.edu	37	chr6	1390684	1390684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctaagggcctcgggcggCccggcaagggccactactgg	16	14	0	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1390684	A	A	1390684	3	1	28	1	0	0	0	0	1	0	0	0	6066	739	26	3	504	3	FOXF2	6	1390684	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08		1390684	169724383	34	43868											
BAT2	7916	broad.mit.edu	37	chr6	31605327	31605328	+	Frame_Shift_Ins	INS	-	G	G													cagaggagcctgggtcccgaINSggggacaaggagcctgggtt							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31605328	G	G	31605327	7	5	28	1	0	1	1	0	0	0	0	0	1324	291	11	0	6556	0	BAT2	6	31605327	Frame_Shift_Ins	INS	-	TCGA-05-4434-01A-01D-1265-08	30214643	31605327	139509740	35	43869											
IMPG1	3617	broad.mit.edu	37	chr6	76728564	76728564	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctccaacacagcgaattcTgtttctctttcctgagttta	5	12	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76728564	A	A	76728564	2	1	28	1	0	0	0	0	0	0	0	1	7798	1567	55	5		5	IMPG1	6	76728564	Silent	SNP	T	TCGA-05-4434-01A-01D-1265-08	45123237	76728564	94386503	36	43870											
BEND3	57673	broad.mit.edu	37	chr6	107390628	107390628	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtactgcttgcgcaggttCtcgtgcgtgaagagctcggg	15	9	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107390628	T	T	107390628	2	4	28	1	0	0	0	0	0	0	0	1	1404	912	32	4		4	BEND3	6	107390628	Silent	SNP	C	TCGA-05-4434-01A-01D-1265-08	30662064	107390628	63724439	37	43871											
AMD1	262	broad.mit.edu	37	chr6	111213351	111213351	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatatttattttgcgttctCttccctcaacagatggagca	6	9	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111213351	G	G	111213351	1	3	28	0	1	0	0	0	0	0	0	0	566	928	32	4		4	AMD1	6	111213351	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	3822723	111213351	59901716	38	43872											
SYNE1	23345	broad.mit.edu	37	chr6	152751686	152751686	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgttccttccagacactgTgcatgctctcgaagctcttc	7	13	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152751686	C	C	152751686	2	2	28	1	0	0	0	0	0	0	0	1	15564	1683	59	5		5	SYNE1	6	152751686	Silent	SNP	T	TCGA-05-4434-01A-01D-1265-08	41538335	152751686	18363381	39	43873											
SLC22A2	6582	broad.mit.edu	37	chr6	160679700	160679700	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagatgggcgcgaaggtagcCgagagcagagccaagaggaa	17	7	0	4			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160679700	T	T	160679700	2	4	28	1	0	0	0	0	0	0	0	1	14564	639	23	4		4	SLC22A2	6	160679700	Silent	SNP	C	TCGA-05-4434-01A-01D-1265-08	7928014	160679700	10435367	40	43874											
SLC22A3	6581	broad.mit.edu	37	chr6	160831831	160831831	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcattacagatcctgagaCgcattgctaagtgcaatggg	11	8	0	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160831831	T	T	160831831	3	4	28	1	0	0	0	0	1	0	0	0	14569	536	19	4	946	4	SLC22A3	6	160831831	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	152131	160831831	10283236	41	43875											
YWHAG	7532	broad.mit.edu	37	chr7	75988021	75988021	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcagggagcggcgggggAggggaggagacactcacgtt	23	7	1	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75988021	G	G	75988021	1	3	28	0	1	0	0	0	0	0	0	0	17630	319	11	5		5	YWHAG	7	75988021	Intron	SNP	A	TCGA-05-4434-01A-01D-1265-08		75988021	83150642	42	43876											
SEMA3D	223117	broad.mit.edu	37	chr7	84644482	84644482	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccataagtgtcgcatctGtgcaaggagagctgaaccaa	10	10	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84644482	A	A	84644482	2	1	28	1	0	0	0	0	0	0	0	1	14140	1368	48	4		4	SEMA3D	7	84644482	Silent	SNP	G	TCGA-05-4434-01A-01D-1265-08	8656461	84644482	74494181	43	43877											
MLL3	58508	broad.mit.edu	37	chr7	151896444	151896445	+	Frame_Shift_Del	DEL	TT	-	-													ccaagaaacctgtgttcatgTttgttttatataaaagctga							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151896445	-	-	151896444	7	5	28	1	0	1	0	1	0	0	0	0	9715	1725	60	0	10674	0	MLL3	7	151896444	Frame_Shift_Del	DEL	TT	TCGA-05-4434-01A-01D-1265-08	67251962	151896444	7242219	44	43878											
ACTR3B	57180	broad.mit.edu	37	chr7	152497649	152497649	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtcagcaaaggtagttgAccaagctcaaaggagagtgt	13	6	2	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152497649	C	C	152497649	3	2	28	1	0	0	0	0	1	0	0	0	213	275	10	5	144	5	ACTR3B	7	152497649	Missense_Mutation	SNP	A	TCGA-05-4434-01A-01D-1265-08	601205	152497649	6641014	45	43879											
NCOA2	10499	broad.mit.edu	37	chr8	71126235	71126235	+	Frame_Shift_Del	DEL	A	-	-													tctatatcattaaaatttgcAaaaatcaactctgcaagttc							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71126235	-	-	71126235	7	5	28	1	0	1	0	1	0	0	0	0	10324	127	5	0	4312	0	NCOA2	8	71126235	Frame_Shift_Del	DEL	A	TCGA-05-4434-01A-01D-1265-08		71126235	75237787	46	43880											
PEX2	5828	broad.mit.edu	37	chr8	77896530	77896530	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcatacacaaattacacagGacacataggcgatgagcgtt	9	9	1	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77896530	A	A	77896530	1	1	28	0	1	0	0	0	0	0	0	0	11840	1189	41	4		4	PEX2	8	77896530	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	6770295	77896530	68467492	47	43881											
MMP16	4325	broad.mit.edu	37	chr8	89339187	89339188	+	Intron	DNP	GG	AA	AA													agggtctccacagctggaagGgaaacaacgtgctgggaccc							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	89339188	AA	AA	89339187	1	1	28	0	1	0	0	0	0	0	0	0	9748	1247	43	4		4	MMP16	8	89339187	Intron	DNP	GG	TCGA-05-4434-01A-01D-1265-08	11442657	89339187	57024835	48	43882											
FBXO43	286151	broad.mit.edu	37	chr8	101146122	101146122	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgctcctctactacattcttCagacccatgataagcacaca	4	14	3	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101146122	G	G	101146122	3	3	28	1	0	0	0	0	1	0	0	0	5809	835	29	4	95	4	FBXO43	8	101146122	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	11806935	101146122	45217900	49	43883											
FBXO43	286151	broad.mit.edu	37	chr8	101146305	101146305	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaagcacacacactaaatCttctggtttcatatagagga	7	8	3	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101146305	T	T	101146305	1	4	28	0	1	0	0	0	0	0	0	0	5809	928	32	4		4	FBXO43	8	101146305	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	183	101146305	45217717	50	43884											
FBXO43	286151	broad.mit.edu	37	chr8	101154000	101154000	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccttttagaagagcgaaaGatacattcaaccttctgcga	7	11	2	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101154000	C	C	101154000	3	2	28	1	0	0	0	0	1	0	0	0	5809	942	33	4	1660	4	FBXO43	8	101154000	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	7695	101154000	45210022	51	43885											
NFX1	4799	broad.mit.edu	37	chr9	33369972	33369972	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactattttgacgtccaggActaagaagatcatgatgcac	9	8	1	5			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33369972	G	G	33369972	3	3	28	1	0	0	0	0	1	0	0	0	10482	275	10	5	3571	5	NFX1	9	33369972	Missense_Mutation	SNP	A	TCGA-05-4434-01A-01D-1265-08		33369972	107843459	52	43886											
CD72	971	broad.mit.edu	37	chr9	35616193	35616193	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcccagctgcgttatcttGaggcggagctgctgcctcag	13	12	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35616193	C	C	35616193	2	2	28	1	0	0	0	0	0	0	0	1	3064	1277	45	4		4	CD72	9	35616193	Silent	SNP	G	TCGA-05-4434-01A-01D-1265-08	2246221	35616193	105597238	53	43887											
SNX30	401548	broad.mit.edu	37	chr9	115580031	115580031	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaatattctgttcgtcgaaGataccaggattttgactggt	10	6	1	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115580031	T	T	115580031	3	4	28	1	0	0	0	0	1	0	0	0	15014	942	33	3	405	3	SNX30	9	115580031	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	79963838	115580031	25633400	54	43888											
SLC2A8	29988	broad.mit.edu	37	chr9	130162258	130162258	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcagctaatggtcgtcGtcggcatcctcctggcctac	12	13	0	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130162258	A	A	130162258	3	1	28	1	0	0	0	0	1	0	0	0	14665	1145	40	4	513	4	SLC2A8	9	130162258	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	14582227	130162258	11051173	55	43889											
C9orf114	51490	broad.mit.edu	37	chr9	131591151	131591151	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctttctctggataaaagAacatcctaattggccaagga	7	10	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131591151	C	C	131591151	1	2	28	0	1	0	0	0	0	0	0	0	2475	261	9	5		5	C9orf114	9	131591151	Intron	SNP	A	TCGA-05-4434-01A-01D-1265-08	1428893	131591151	9622280	56	43890											
GRID1	2894	broad.mit.edu	37	chr10	87898745	87898745	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacgtcaaggcccagccgcGaggcctggtccagaaagctt	13	13	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87898745	A	A	87898745	3	1	28	1	0	0	0	0	1	0	0	0	6837	1059	37	4	2524	4	GRID1	10	87898745	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08		87898745	47636002	57	43891											
MYOF	26509	broad.mit.edu	37	chr10	95211731	95211731	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attataatacgttattaaagAtgtgtctcttcaacaaaata	4	5	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95211731	C	C	95211731	1	2	28	0	1	0	0	0	0	0	0	0	10183	348	12	5		5	MYOF	10	95211731	Intron	SNP	A	TCGA-05-4434-01A-01D-1265-08	7312986	95211731	40323016	58	43892											
PDZD7	79955	broad.mit.edu	37	chr10	102780351	102780351	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcagccctttccctccaaCcttgggagatctgagccact	7	17	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102780351	G	G	102780351	1	3	28	0	1	0	0	0	0	0	0	0	11798	522	18	4		4	PDZD7	10	102780351	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	7568620	102780351	32754396	59	43893											
C10orf137	26098	broad.mit.edu	37	chr10	127429728	127429728	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaccaaacaaaagaagacCaggagatcctgcatagcctt	7	10	0	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127429728	T	T	127429728	4	4	28	1	0	0	0	0	0	1	0	0	1605	595	21	4	2289	4	C10orf137	10	127429728	Nonsense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	24649377	127429728	8105019	60	43894											
MUC5B	727897	broad.mit.edu	37	chr11	1154213	1154213	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctgggctcagcccccCtcctctttctgcaggccatg	9	17	4	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1154213	G	G	1154213	1	3	28	0	1	0	0	0	0	0	0	0	10073	696	24	4		4	MUC5B	11	1154213	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08		1154213	133852303	61	43895											
PHF21A	51317	broad.mit.edu	37	chr11	45970399	45970399	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacacacacaaagcaaaaGcaacagcagcaagggagaga	9	10	0	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45970399	A	A	45970399	1	1	28	0	1	0	0	0	0	0	0	0	11928	986	34	4		4	PHF21A	11	45970399	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	44816186	45970399	89036117	62	43896											
SCGB2A1	4246	broad.mit.edu	37	chr11	61976175	61976175	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttgatccctgccacgcacGactgaacacagacagcagcc	8	17	0	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61976175	A	A	61976175	1	1	28	0	1	0	0	0	0	0	0	0	14011	1073	37	4		4	SCGB2A1	11	61976175	5'UTR	SNP	G	TCGA-05-4434-01A-01D-1265-08	16005776	61976175	73030341	63	43897											
SLC22A6	9356	broad.mit.edu	37	chr11	62752036	62752036	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggtgggtagggatggCagcagtgaagttctgcaggg	20	5	1	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62752036	T	T	62752036	3	4	28	1	0	0	0	0	1	0	0	0	14572	710	25	4	1604	4	SLC22A6	11	62752036	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	775861	62752036	72254480	64	43898											
PPP1CA	5499	broad.mit.edu	37	chr11	67166623	67166623	+	Frame_Shift_Del	DEL	C	-	-													ctgctccatagactgcaggtCcggggacaggcctggggggc							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67166623	-	-	67166623	7	5	28	1	0	1	0	1	0	0	0	0	12450	855	30	0	469	0	PPP1CA	11	67166623	Frame_Shift_Del	DEL	C	TCGA-05-4434-01A-01D-1265-08	4414587	67166623	67839893	65	43899											
CD4	920	broad.mit.edu	37	chr12	6925422	6925422	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaacgggttacccaggacCctaagctccagatgggcaag	11	11	0	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6925422	T	T	6925422	3	4	28	1	0	0	0	0	1	0	0	0	3044	623	22	4	826	4	CD4	12	6925422	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08		6925422	126926473	66	43900											
KIAA0748	9840	broad.mit.edu	37	chr12	55354768	55354768	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctgggcatcattgatctaGagaggtattttccagccata	10	9	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55354768	T	T	55354768	1	4	28	0	1	0	0	0	0	0	0	0	8260	957	33	3		3	KIAA0748	12	55354768	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	48429346	55354768	78497127	67	43901											
ERBB3	2065	broad.mit.edu	37	chr12	56489568	56489568	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaataaaagggctatgaGgcgatacttggaacggggtg	15	5	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56489568	A	A	56489568	3	1	28	1	0	0	0	0	1	0	0	0	5250	1000	35	4	2230	4	ERBB3	12	56489568	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	1134800	56489568	77362327	68	43902											
STAC3	246329	broad.mit.edu	37	chr12	57641974	57641974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactataggcccgatggaaaCcaggtggctgtaggatggga	15	7	0	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57641974	A	A	57641974	3	1	28	1	0	0	0	0	1	0	0	0	15359	507	18	3	686	3	STAC3	12	57641974	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	1152406	57641974	76209921	69	43903											
PCDH9	5101	broad.mit.edu	37	chr13	67801491	67801491	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgggacttataatgtacCtgaggtctatattaggaggg	13	4	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67801491	T	T	67801491	3	4	28	1	0	0	0	0	1	0	0	0	11612	681	24	4	2647	4	PCDH9	13	67801491	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08		67801491	47368387	70	43904											
SLC22A17	51310	broad.mit.edu	37	chr14	23816453	23816453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggatgatatgaatgcaGgtggggaggtcaaggctggc	19	4	1	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23816453	T	T	23816453	1	4	28	0	1	0	0	0	0	0	0	0	14561	1015	35	2		2	SLC22A17	14	23816453	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08		23816453	83533087	71	43905											
DLGAP5	9787	broad.mit.edu	37	chr14	55650183	55650191	+	Intron	DEL	TAATGAGAC	-	-													accttctaccaaccagttaaTaatgagactaagggaaaggg							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55650191	-	-	55650183	6	5	28	0	1	1	0	1	0	0	0	0	4603	1421	49	0		0	DLGAP5	14	55650183	Intron	DEL	TAATGAGAC	TCGA-05-4434-01A-01D-1265-08	31833730	55650183	51699357	72	43906											
OTX2	5015	broad.mit.edu	37	chr14	57269169	57269169	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctatcctacatgggcagatCagctaaacacacaatttccc	5	13	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57269169	G	G	57269169	1	3	28	0	1	0	0	0	0	0	0	0	11415	841	29	4		4	OTX2	14	57269169	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	1618986	57269169	50080371	73	43907											
TTLL5	23093	broad.mit.edu	37	chr14	76232396	76232396	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcaacattagtgattcttCgtatttagtgattacccaac	6	9	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76232396	T	T	76232396	1	4	28	0	1	0	0	0	0	0	0	0	16856	899	31	4		4	TTLL5	14	76232396	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	18963227	76232396	31117144	74	43908											
RPS6KA5	9252	broad.mit.edu	37	chr14	91389482	91389482	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgtcctgaatctccccctCtgacaatatctggtgccatg	7	14	3	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91389482	G	G	91389482	3	3	28	1	0	0	0	0	1	0	0	0	13765	913	32	4	1785	4	RPS6KA5	14	91389482	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	15157086	91389482	15960058	75	43909											
POTEB	339010	broad.mit.edu	37	chr15	21071203	21071203	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcccaggcccggttacctCttttgcttgtccctcttgtt	7	15	2	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21071203	G	G	21071203	3	3	28	1	0	0	0	0	1	0	0	0	12357	912	32	4		4	POTEB	15	21071203	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08		21071203	81460189	76	43910											
ZNF770	54989	broad.mit.edu	37	chr15	35274487	35274487	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagagaacccacaaatgtTctctgggtttgttcagagct	9	10	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35274487	C	C	35274487	2	2	28	1	0	0	0	0	0	0	0	1	18272	1780	62	5		5	ZNF770	15	35274487	Silent	SNP	T	TCGA-05-4434-01A-01D-1265-08	14203284	35274487	67256905	77	43911											
CLPX	10845	broad.mit.edu	37	chr15	65444911	65444915	+	Intron	DEL	AGATT	-	-													taatgaatcacattgaaaacAgattacatacaagtgctttt							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65444915	-	-	65444911	6	5	28	0	1	1	0	1	0	0	0	0	3588	203	7	0		0	CLPX	15	65444911	Intron	DEL	AGATT	TCGA-05-4434-01A-01D-1265-08	30170424	65444911	37086481	78	43912											
SLCO3A1	28232	broad.mit.edu	37	chr15	92663622	92663623	+	Intron	INS	-	AGC	AGC													ggccaagaaggggccttaggINSagcagggagctataagatgg							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGC	92663623	AGC	AGC	92663622	6	5	28	0	1	1	1	0	0	0	0	0	14842	1189	41	0		0	SLCO3A1	15	92663622	Intron	INS	-	TCGA-05-4434-01A-01D-1265-08	27218711	92663622	9867770	79	43913	224	2									
SLCO3A1	28232	broad.mit.edu	37	chr15	92663629	92663629	+	Intron	SNP	G	A	A													gaaggggccttaggagcaggGagctataagatgggagcaca							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92663629	A	A	92663629	1	1	28	0	1	0	0	0	0	0	0	0	14842	1189	41	4		4	SLCO3A1	15	92663629	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	7	92663629	9867763	80	43914	224	2									
ALDH1A3	220	broad.mit.edu	37	chr15	101433167	101433167	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatgacaacgtcgtgtgcTtcaccaggcatgagcccatt	10	12	1	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101433167	A	A	101433167	3	1	28	1	0	0	0	0	1	0	0	0	492	1609	56	5	511	5	ALDH1A3	15	101433167	Missense_Mutation	SNP	T	TCGA-05-4434-01A-01D-1265-08	8769538	101433167	1098225	81	43915											
ABCC11	85320	broad.mit.edu	37	chr16	48244898	48244898	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttgtgcaactctgggccCaggctgttcccttcttcctc	8	15	3	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48244898	T	T	48244898	2	4	28	1	0	0	0	0	0	0	0	1	51	581	21	4		4	ABCC11	16	48244898	Silent	SNP	C	TCGA-05-4434-01A-01D-1265-08		48244898	42109855	82	43916											
KATNB1	10300	broad.mit.edu	37	chr16	57775498	57775498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggcagatccttccactGggcttcaggttccaaagcgg	13	11	1	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57775498	T	T	57775498	1	4	28	0	1	0	0	0	0	0	0	0	8057	1363	47	2		2	KATNB1	16	57775498	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	9530600	57775498	32579255	83	43917											
NFAT5	10725	broad.mit.edu	37	chr16	69724870	69724870	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactactggatgtaatttagAtaaggtaaatattatcccta	6	5	0	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69724870	G	G	69724870	3	3	28	1	0	0	0	0	1	0	0	0	10455	333	12	5	1848	5	NFAT5	16	69724870	Missense_Mutation	SNP	A	TCGA-05-4434-01A-01D-1265-08	11949372	69724870	20629883	84	43918											
PDPR	55066	broad.mit.edu	37	chr16	70165265	70165265	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtatcccgctacatgcctgcGaacacttctacctcctgact	6	16	1	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70165265	A	A	70165265	3	1	28	1	0	0	0	0	1	0	0	0	11783	1059	37	4	812	4	PDPR	16	70165265	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	440395	70165265	20189488	85	43919											
PMFBP1	83449	broad.mit.edu	37	chr16	72174328	72174328	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccaaagcgttactgcaggCcagcttatttcgaagttctt	8	10	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72174328	T	T	72174328	3	4	28	1	0	0	0	0	1	0	0	0	12229	739	26	4	2357	4	PMFBP1	16	72174328	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	2009063	72174328	18180425	86	43920											
RPAIN	84268	broad.mit.edu	37	chr17	5324728	5324728	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctagttcaagaggtgaTggaagaagagtggaatgctt	13	4	2	4			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5324728	A	A	5324728	3	1	28	1	0	0	0	0	1	0	0	0	13651	1464	51	5	200	5	RPAIN	17	5324728	Missense_Mutation	SNP	T	TCGA-05-4434-01A-01D-1265-08		5324728	75870482	87	43921											
STX8	9482	broad.mit.edu	37	chr17	9460847	9460847	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgattgtcacggtaagcTgaaaagaaaagaacacatcc	8	9	2	4			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9460847	A	A	9460847	5	1	28	1	0	0	0	0	0	0	1	0	15469	1594	55	5	618	5	STX8	17	9460847	Splice_Site	SNP	T	TCGA-05-4434-01A-01D-1265-08	4136119	9460847	71734363	88	43922											
MYH1	4619	broad.mit.edu	37	chr17	10412921	10412921	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtggtggttgaaaaactGttgcagtttctcattggtga	12	5	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10412921	A	A	10412921	4	1	28	1	0	0	0	0	0	1	0	0	10123	1386	48	4	4455	4	MYH1	17	10412921	Nonsense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	952074	10412921	70782289	89	43923											
NCOR1	9611	broad.mit.edu	37	chr17	15984100	15984100	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattgtttttttcacaaggTcaatttcacaaagtcagcat	5	8	4	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15984100	C	C	15984100	1	2	28	0	1	0	0	0	0	0	0	0	10330	1682	58	5		5	NCOR1	17	15984100	Intron	SNP	T	TCGA-05-4434-01A-01D-1265-08	5571179	15984100	65211110	90	43924											
MPRIP	23164	broad.mit.edu	37	chr17	16979015	16979015	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgacctgccctcttttttCtcctctaggcaaaacccatt	6	14	3	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16979015	G	G	16979015	1	3	28	0	1	0	0	0	0	0	0	0	9837	928	32	4		4	MPRIP	17	16979015	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	994915	16979015	64216195	91	43925											
LASP1	3927	broad.mit.edu	37	chr17	37034383	37034383	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgagacctgcaagatgacActgaacatgaagaactacaa	9	9	0	6			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37034383	G	G	37034383	2	3	28	1	0	0	0	0	0	0	0	1	8709	146	6	5		5	LASP1	17	37034383	Silent	SNP	A	TCGA-05-4434-01A-01D-1265-08	20055368	37034383	44160827	92	43926											
ERBB2	2064	broad.mit.edu	37	chr17	37880997	37880998	+	In_Frame_Ins	INS	-	TAT	TAT													ggaagcatacgtgatggctgINSgtgtgggctccccatatgtc					rs28933369		TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TAT	37880998	TAT	TAT	37880997	7	5	28	1	0	1	1	0	0	0	0	0	5248	1348	47	0	2404	0	ERBB2	17	37880997	In_Frame_Ins	INS	-	TCGA-05-4434-01A-01D-1265-08	846614	37880997	43314213	93	43927											
DHX40	79665	broad.mit.edu	37	chr17	57650382	57650382	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtacccttttgtttagtcaGagtggtttgatcacttaatg	9	6	2	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57650382	T	T	57650382	1	4	28	0	1	0	0	0	0	0	0	0	4552	957	33	3		3	DHX40	17	57650382	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	19769385	57650382	23544828	94	43928											
BRIP1	83990	broad.mit.edu	37	chr17	59853990	59853990	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggaaattagtatttatttgGaagtatgtacataaaagatc	8	2	0	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59853990	C	C	59853990	1	2	28	0	1	0	0	0	0	0	0	0	1523	1189	41	4		4	BRIP1	17	59853990	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	2203608	59853990	21341220	95	43929											
TEX2	55852	broad.mit.edu	37	chr17	62230409	62230409	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgttggagacttcttcgatCttctttttaataaactctgt	7	7	4	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62230409	T	T	62230409	2	4	28	1	0	0	0	0	0	0	0	1	15903	912	32	4		4	TEX2	17	62230409	Silent	SNP	C	TCGA-05-4434-01A-01D-1265-08	2376419	62230409	18964801	96	43930											
LAMA1	284217	broad.mit.edu	37	chr18	6980611	6980611	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatctgtttgtcttatttctCaattcactcagttccaatgc	4	10	5	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6980611	G	G	6980611	3	3	28	1	0	0	0	0	1	0	0	0	8677	825	29	4	3399	4	LAMA1	18	6980611	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08		6980611	71096637	97	43931											
PSTPIP2	9050	broad.mit.edu	37	chr18	43591131	43591131	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggaaacaccttaacaCgtatgcaaatccaacctttt	6	10	0	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43591131	T	T	43591131	1	4	28	0	1	0	0	0	0	0	0	0	12828	551	19	4		4	PSTPIP2	18	43591131	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	36610520	43591131	34486117	98	43932											
ABCA7	10347	broad.mit.edu	37	chr19	1063563	1063563	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgctggctcgggcctggcGcgtctgggactctcatggta	15	13	2	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1063563	A	A	1063563	2	1	28	1	0	0	0	0	0	0	0	1	37	1074	38	4		4	ABCA7	19	1063563	Silent	SNP	G	TCGA-05-4434-01A-01D-1265-08		1063563	58065420	99	43933											
LASS4	79603	broad.mit.edu	37	chr19	8315894	8315894	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttctgaggctccagcctctCaggccccacttgccccaccc	8	20	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8315894	T	T	8315894	1	4	28	0	1	0	0	0	0	0	0	0	8713	841	29	4		4	LASS4	19	8315894	Intron	SNP	C	TCGA-05-4434-01A-01D-1265-08	7252331	8315894	50813089	100	43934											
CC2D1A	54862	broad.mit.edu	37	chr19	14024151	14024151	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagggtacagggaccccccGccaaccccgatgccctgcac	11	19	0	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14024151	A	A	14024151	1	1	28	0	1	0	0	0	0	0	0	0	2752	1102	38	4		4	CC2D1A	19	14024151	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	5708257	14024151	45104832	101	43935											
UNC13A	23025	broad.mit.edu	37	chr19	17780382	17780382	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaagggtagctcaaagcgcGtgtccaggaggatgcggtgg	17	8	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17780382	A	A	17780382	3	1	28	1	0	0	0	0	1	0	0	0	17110	1145	40	4	4889	4	UNC13A	19	17780382	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	3756231	17780382	41348601	102	43936											
ZNF765	91661	broad.mit.edu	37	chr19	53913791	53913791	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgacaggtctttagtggGcagtcaacacttgtttacca	10	8	2	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53913791	A	A	53913791	1	1	28	0	1	0	0	0	0	0	0	0	18268	1218	42	4		4	ZNF765	19	53913791	3'UTR	SNP	G	TCGA-05-4434-01A-01D-1265-08	36133409	53913791	5215192	103	43937											
NLRP5	126206	broad.mit.edu	37	chr19	56572808	56572808	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaataaggaagctgctggagGaagtgcagctactcaagccc	12	9	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56572808	A	A	56572808	3	1	28	1	0	0	0	0	1	0	0	0	10575	1175	41	4	3575	4	NLRP5	19	56572808	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	2659017	56572808	2556175	104	43938											
NLRP5	126206	broad.mit.edu	37	chr19	56572884	56572884	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatgaccggtactggtGgaaaaactgaagatacggaa	13	5	0	5			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56572884	A	A	56572884	4	1	28	1	0	0	0	0	0	1	0	0	10575	1357	47	4	3651	4	NLRP5	19	56572884	Nonsense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	76	56572884	2556099	105	43939											
CCDC116	164592	broad.mit.edu	37	chr22	21988400	21988400	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccatccacatgtggcagCtcagcactccagggccaacg	9	17	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21988400	T	T	21988400	2	4	28	1	0	0	0	0	0	0	0	1	2779	796	28	4		4	CCDC116	22	21988400	Silent	SNP	C	TCGA-05-4434-01A-01D-1265-08		21988400	29316166	106	43940											
NF2	4771	broad.mit.edu	37	chr22	30035169	30035169	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgctgaagaggagctggttCaggagatcacacaacattta	11	7	2	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30035169	T	T	30035169	4	4	28	1	0	0	0	0	0	1	0	0	10452	827	29	4	341	4	NF2	22	30035169	Nonsense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	8046769	30035169	21269397	107	43941											
ASCC2	84164	broad.mit.edu	37	chr22	30197042	30197042	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaacacatcaaactcgtcAttctggaagacgttgtggcg	10	10	3	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30197042	G	G	30197042	2	3	28	1	0	0	0	0	0	0	0	1	1036	214	8	5		5	ASCC2	22	30197042	Silent	SNP	A	TCGA-05-4434-01A-01D-1265-08	161873	30197042	21107524	108	43942											
SLC5A1	6523	broad.mit.edu	37	chr22	32445957	32445957	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttccaccaatcgtgggactGttggaggcttcttcctggca	11	11	1	0			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32445957	C	C	32445957	3	2	28	1	0	0	0	0	1	0	0	0	14775	1377	48	4	169	4	SLC5A1	22	32445957	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	2248915	32445957	18858609	109	43943											
MYH9	4627	broad.mit.edu	37	chr22	36708237	36708237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggaaccagcactcctcgtCcagcagggccagaatgcccg	13	15	0	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36708237	A	A	36708237	3	1	28	1	0	0	0	0	1	0	0	0	10136	855	30	3	4409	3	MYH9	22	36708237	Missense_Mutation	SNP	C	TCGA-05-4434-01A-01D-1265-08	4262280	36708237	14596329	110	43944											
KDM5C	8242	broad.mit.edu	37	chrX	53225159	53225159	+	Frame_Shift_Del	DEL	T	-	-													caagagcctccttgagagccTggatgttgggcaggtgaaca							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53225159	-	-	53225159	7	5	28	1	0	1	0	1	0	0	0	0	8205	1580	55	0	1749	0	KDM5C	23	53225159	Frame_Shift_Del	DEL	T	TCGA-05-4434-01A-01D-1265-08		53225159	102045401	111	43945											
FGF16	8823	broad.mit.edu	37	chrX	76711920	76711920	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccgggagggatacaggacTaaacgacaccagaaattcac	10	12	1	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76711920	C	C	76711920	2	2	28	1	0	0	0	0	0	0	0	1	5901	1509	53	5		5	FGF16	23	76711920	Silent	SNP	T	TCGA-05-4434-01A-01D-1265-08	23486761	76711920	78558640	112	43946											
AMMECR1	9949	broad.mit.edu	37	chrX	109507607	109507607	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaacctgacatgaaGgaagacaagaacgttgacaa	10	6	0	5			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109507607	A	A	109507607	1	1	28	0	1	0	0	0	0	0	0	0	578	1015	35	4		4	AMMECR1	23	109507607	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	32795687	109507607	45762953	113	43947											
AMMECR1	9949	broad.mit.edu	37	chrX	109507918	109507918	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctgctaggttaggtgcctGagatataaagaccaaaagac	11	7	1	3			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109507918	A	A	109507918	1	1	28	0	1	0	0	0	0	0	0	0	578	1305	45	4		4	AMMECR1	23	109507918	Intron	SNP	G	TCGA-05-4434-01A-01D-1265-08	311	109507918	45762642	114	43948											
PAK3	5063	broad.mit.edu	37	chrX	110435485	110435485	+	Intron	DEL	A	-	-													cttcgatggcaacttcgcctAaaaaaaaaatgggtagcact							TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110435485	-	-	110435485	6	5	28	0	1	1	0	1	0	0	0	0	11496	377	13	0		0	PAK3	23	110435485	Intron	DEL	A	TCGA-05-4434-01A-01D-1265-08	927567	110435485	44835075	115	43949											
MCF2	4168	broad.mit.edu	37	chrX	138688030	138688030	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcatgagaaggtaaaaatAgctaatgcataggaattatc	8	5	1	1			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138688030	G	G	138688030	1	3	28	0	1	0	0	0	0	0	0	0	9471	435	15	5		5	MCF2	23	138688030	Intron	SNP	A	TCGA-05-4434-01A-01D-1265-08	28252545	138688030	16582530	116	43950											
DUSP9	1852	broad.mit.edu	37	chrX	152915088	152915088	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaagcagatccccatctccGaccactggagccagaacctg	8	16	1	2			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152915088	A	A	152915088	3	1	28	1	0	0	0	0	1	0	0	0	4872	1058	37	4	781	4	DUSP9	23	152915088	Missense_Mutation	SNP	G	TCGA-05-4434-01A-01D-1265-08	14227058	152915088	2355472	117	43951											
PADI3	51702	broad.mit.edu	37	chr1	17594543	17594543	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcctgccttgggccatGggcaggtcctgcttacactc	11	14	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17594543	A	A	17594543	1	1	29	0	1	0	0	0	0	0	0	0	11473	1363	47	4		4	PADI3	1	17594543	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08		17594543	231656078	1	43952											
KIAA0090	23065	broad.mit.edu	37	chr1	19545844	19545844	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtgccagtctcttagTgatcatggtggcaaaaacca	9	11	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19545844	A	A	19545844	3	1	29	1	0	0	0	0	1	0	0	0	8223	1696	59	5	50	5	KIAA0090	1	19545844	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	1951301	19545844	229704777	2	43953											
C1orf91	56063	broad.mit.edu	37	chr1	32682936	32682936	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagagagttacagatgggCacagccagggtcagatctgg	15	9	2	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32682936	A	A	32682936	2	1	29	1	0	0	0	0	0	0	0	1	2090	697	25	3		3	C1orf91	1	32682936	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	13137092	32682936	216567685	3	43954											
ORC1L	4998	broad.mit.edu	37	chr1	52867116	52867116	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacacaaactgtccaatctgGatgtgaatctcggtggaaca	9	9	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52867116	A	A	52867116	2	1	29	1	0	0	0	0	0	0	0	1	11355	1164	41	4		4	ORC1L	1	52867116	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	20184180	52867116	196383505	4	43955											
COL24A1	255631	broad.mit.edu	37	chr1	86488567	86488567	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccctgaaaggccctacaaAaaaaggtgacattttgtgat	8	8	0	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86488567	G	G	86488567	1	3	29	0	1	0	0	0	0	0	0	0	3715	29	1	5		5	COL24A1	1	86488567	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	33621451	86488567	162762054	5	43956											
CD1D	912	broad.mit.edu	37	chr1	158153922	158153922	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctattctctcacagttcCtatcagggcgtcctgtgact	7	12	4	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158153922	T	T	158153922	2	4	29	1	0	0	0	0	0	0	0	1	3007	668	24	4		4	CD1D	1	158153922	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	71665355	158153922	91096699	6	43957											
SPTA1	6708	broad.mit.edu	37	chr1	158592734	158592734	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttcatggctaatatacagGtaacagagaactgatcatgc	8	7	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158592734	A	A	158592734	1	1	29	0	1	0	0	0	0	0	0	0	15234	1276	44	4		4	SPTA1	1	158592734	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	438812	158592734	90657887	7	43958											
NOS1AP	9722	broad.mit.edu	37	chr1	162337268	162337268	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgtgtaggtgccgagggCgaggagatggaggcggcggc	22	9	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162337268	T	T	162337268	1	4	29	0	1	0	0	0	0	0	0	0	10637	783	27	4		4	NOS1AP	1	162337268	3'UTR	SNP	C	TCGA-05-5420-01A-01D-1625-08	3744534	162337268	86913353	8	43959											
PAPPA2	60676	broad.mit.edu	37	chr1	176564566	176564566	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccactcacaggctatgatgGgggtgactgccgcctgcagg	14	13	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176564566	A	A	176564566	3	1	29	1	0	0	0	0	1	0	0	0	11527	1232	43	4	1832	4	PAPPA2	1	176564566	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	14227298	176564566	72686055	9	43960											
CTSE	1510	broad.mit.edu	37	chr1	206325297	206325297	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgtcacagagccaggccaGacctttgtggatgcagagtt	13	9	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206325297	A	A	206325297	2	1	29	1	0	0	0	0	0	0	0	1	4067	933	33	4		4	CTSE	1	206325297	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	29760731	206325297	42925324	10	43961											
CR1L	1379	broad.mit.edu	37	chr1	207867652	207867652	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtttagtgactcgtgagaTttttgtcattcattatttaa	7	5	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207867652	C	C	207867652	1	2	29	0	1	0	0	0	0	0	0	0	3873	1508	52	5		5	CR1L	1	207867652	Intron	SNP	T	TCGA-05-5420-01A-01D-1625-08	1542355	207867652	41382969	11	43962											
USH2A	7399	broad.mit.edu	37	chr1	216061717	216061717	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgttcaacacagagtcaatCcagggtacattcctaagtct	7	11	3	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216061717	A	A	216061717	1	1	29	0	1	0	0	0	0	0	0	0	17162	870	30	3		3	USH2A	1	216061717	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	8194065	216061717	33188904	12	43963											
USH2A	7399	broad.mit.edu	37	chr1	216462857	216462857	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggaattctataattttcGgaacgtccgttttaatgcac	9	7	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216462857	C	C	216462857	1	2	29	0	1	0	0	0	0	0	0	0	17162	1131	39	4		4	USH2A	1	216462857	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	401140	216462857	32787764	13	43964											
OR2T11	127077	broad.mit.edu	37	chr1	248790184	248790184	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgatcttctctttagaaacCatgtctgccaggagttttgg	9	8	3	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248790184	G	G	248790184	3	3	29	1	0	0	0	0	1	0	0	0	11112	594	21	4	708	4	OR2T11	1	248790184	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	32327327	248790184	460437	14	43965											
PGBD2	267002	broad.mit.edu	37	chr1	249207883	249207883	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttccctctgaataaccAgtcgacccagacactattaa	4	13	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	249207883	G	G	249207883	1	3	29	0	1	0	0	0	0	0	0	0	11876	203	7	5		5	PGBD2	1	249207883	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	417699	249207883	42738	15	43966											
MYT1L	23040	broad.mit.edu	37	chr2	1913986	1913986	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagactatggatagagctcAcggatggtgcactcctgctg	13	10	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1913986	G	G	1913986	1	3	29	0	1	0	0	0	0	0	0	0	10201	174	6	5		5	MYT1L	2	1913986	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08		1913986	241285387	16	43967											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10863170	10863170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacaggagagggagacaGgttgctacctcaggaagcca	16	8	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10863170	T	T	10863170	1	4	29	0	1	0	0	0	0	0	0	0	1185	1015	35	2		2	ATP6V1C2	2	10863170	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	8949184	10863170	232336203	17	43968											
NBAS	51594	broad.mit.edu	37	chr2	15468526	15468526	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggaaagaagggagagaGggaggaagaaaaggctgatt	18	2	0	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15468526	A	A	15468526	1	1	29	0	1	0	0	0	0	0	0	0	10280	1015	35	4		4	NBAS	2	15468526	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	4605356	15468526	227730847	18	43969											
AUP1	550	broad.mit.edu	37	chr2	74755588	74755588	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagggtaagaggttgtaCcacatcttggatagaaaatg	12	5	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74755588	T	T	74755588	3	4	29	1	0	0	0	0	1	0	0	0	1225	507	18	4	711	4	AUP1	2	74755588	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	59287062	74755588	168443785	19	43970											
TNFAIP6	7130	broad.mit.edu	37	chr2	152220630	152220630	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgatttttcttcttttttaTccttggaggaaaaaaatcca	5	6	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152220630	A	A	152220630	1	1	29	0	1	0	0	0	0	0	0	0	16398	1450	50	5		5	TNFAIP6	2	152220630	Intron	SNP	T	TCGA-05-5420-01A-01D-1625-08	77465042	152220630	90978743	20	43971											
KCNH7	90134	broad.mit.edu	37	chr2	163291819	163291819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaaataaagtgctgtgaCgtatttgtctttaatggatg	11	3	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163291819	A	A	163291819	3	1	29	1	0	0	0	0	1	0	0	0	8107	536	19	3	1849	3	KCNH7	2	163291819	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	11071189	163291819	79907554	21	43972											
COBLL1	22837	broad.mit.edu	37	chr2	165561011	165561011	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgtctggaggaactcCatctactggctgtaaggcta	11	10	2	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165561011	A	A	165561011	4	1	29	1	0	0	0	0	0	1	0	0	3686	603	21	2	2360	2	COBLL1	2	165561011	Nonsense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	2269192	165561011	77638362	22	43973											
HECW2	57520	broad.mit.edu	37	chr2	197298051	197298051	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcatggagctctgggCggcaaggctctggaggttct	16	10	4	0	rs151108819	byFrequency	TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197298051	T	T	197298051	3	4	29	1	0	0	0	0	1	0	0	0	7110	768	27	4	4733	4	HECW2	2	197298051	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	31737040	197298051	45901322	23	43974											
NOP58	51602	broad.mit.edu	37	chr2	203167633	203167633	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttgtgcctttacacttAccctattcagttgaagaaga	7	8	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203167633	T	T	203167633	1	4	29	0	1	0	0	0	0	0	0	0	10635	406	14	5		5	NOP58	2	203167633	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	5869582	203167633	40031740	24	43975											
DNPEP	23549	broad.mit.edu	37	chr2	220251156	220251156	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtgtaaagatggagaagtCagagaaggcttcatgacgat	14	4	2	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220251156	A	A	220251156	1	1	29	0	1	0	0	0	0	0	0	0	4719	841	29	3		3	DNPEP	2	220251156	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	17083523	220251156	22948217	25	43976											
STK11IP	114790	broad.mit.edu	37	chr2	220476447	220476447	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggctccttctccgtctgcCagccctgtctgccaccctcc	7	21	3	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220476447	T	T	220476447	2	4	29	1	0	0	0	0	0	0	0	1	15406	581	21	4		4	STK11IP	2	220476447	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	225291	220476447	22722926	26	43977											
CDCP1	64866	broad.mit.edu	37	chr3	45134848	45134848	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggcaaaggtgcgaagGgtcaccgagatgttctgctt	16	8	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45134848	T	T	45134848	2	4	29	1	0	0	0	0	0	0	0	1	3123	1219	43	2		2	CDCP1	3	45134848	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08		45134848	152887582	27	43978											
LAMB2	3913	broad.mit.edu	37	chr3	49170112	49170112	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcactggggacagtagctCagtcagttccgctgagttcc	12	12	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49170112	A	A	49170112	1	1	29	0	1	0	0	0	0	0	0	0	8683	841	29	3		3	LAMB2	3	49170112	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	4035264	49170112	148852318	28	43979											
SEMA5B	54437	broad.mit.edu	37	chr3	122658267	122658267	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggaagggaagaaagcaatCgtacctgaagaagagagaca	14	5	0	5			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122658267	T	T	122658267	1	4	29	0	1	0	0	0	0	0	0	0	14151	899	31	4		4	SEMA5B	3	122658267	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	73488155	122658267	75364163	29	43980											
ANAPC13	25847	broad.mit.edu	37	chr3	134197311	134197311	+	3'UTR	DEL	A	-	-													gcactttgctaccacaaactAaatgggtgtacatttttgag							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134197311	-	-	134197311	6	5	29	0	1	1	0	1	0	0	0	0	601	377	13	0		0	ANAPC13	3	134197311	3'UTR	DEL	A	TCGA-05-5420-01A-01D-1625-08	11539044	134197311	63825119	30	43981											
LRRC31	79782	broad.mit.edu	37	chr3	169587391	169587391	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaacaaaacaaatacaaCagcaaaaacaccagcagcca	3	11	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169587391	T	T	169587391	1	4	29	0	1	0	0	0	0	0	0	0	9073	493	17	4		4	LRRC31	3	169587391	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	35390080	169587391	28435039	31	43982			1	37		4	4	294	C		9.886509e-10
LRRC31	79782	broad.mit.edu	37	chr3	169587618	169587618	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaagttgatgggggtagttCccaataagacatcttcctgt	11	7	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169587618	T	T	169587618	1	4	29	0	1	0	0	0	0	0	0	0	9073	870	30	4		4	LRRC31	3	169587618	5'UTR	SNP	C	TCGA-05-5420-01A-01D-1625-08	227	169587618	28434812	32	43983			1	37		4	4	294	C		9.886509e-10
LRRC31	79782	broad.mit.edu	37	chr3	169587661	169587661	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttctgttttctaggatttCtaagaagaaaagaagattct	7	5	4	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169587661	T	T	169587661	5	4	29	1	0	0	0	0	0	0	1	0	9073	928	32	4		4	LRRC31	3	169587661	Splice_Site	SNP	C	TCGA-05-5420-01A-01D-1625-08	43	169587661	28434769	33	43984			1	37		4	4	294	C		9.886509e-10
LRRC31	79782	broad.mit.edu	37	chr3	169587684	169587684	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaagaaaagaagattctgtCaagcctgtgttcaatcaaaa	8	6	4	4	rs112238324	by1000genomes	TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169587684	T	T	169587684	1	4	29	0	1	0	0	0	0	0	0	0	9073	841	29	4		4	LRRC31	3	169587684	5'Flank	SNP	C	TCGA-05-5420-01A-01D-1625-08	23	169587684	28434746	34	43985			1	37		4	4	294	C		9.886509e-10
SLC30A9	10463	broad.mit.edu	37	chr4	42077616	42077616	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagcctttgtgctattaaAgtatatatatgtgtatgtat	7	4	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42077616	G	G	42077616	1	3	29	0	1	0	0	0	0	0	0	0	14676	87	3	5		5	SLC30A9	4	42077616	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08		42077616	149076660	35	43986											
GABRG1	2565	broad.mit.edu	37	chr4	46050633	46050633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaggaaggaaggagaaGggaagggaagcgaagggaag	21	1	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46050633	T	T	46050633	1	4	29	0	1	0	0	0	0	0	0	0	6231	1015	35	2		2	GABRG1	4	46050633	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	3973017	46050633	145103643	36	43987											
ANKRD56	345079	broad.mit.edu	37	chr4	77816907	77816912	+	In_Frame_Del	DEL	ACATTT	-	-													tcttcccactgctgtccctgAcatttacccgagaagccaac							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77816912	-	-	77816907	7	5	29	1	0	1	0	1	0	0	0	0	682	275	10	0	289	0	ANKRD56	4	77816907	In_Frame_Del	DEL	ACATTT	TCGA-05-5420-01A-01D-1625-08	31766274	77816907	113337369	37	43988											
KLHL8	57563	broad.mit.edu	37	chr4	88106793	88106793	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagtgagccgtgaagaataGacaaactttaccaagtcttc	8	8	1	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88106793	A	A	88106793	2	1	29	1	0	0	0	0	0	0	0	1	8466	929	33	4		4	KLHL8	4	88106793	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	10289886	88106793	103047483	38	43989											
SEC24D	9871	broad.mit.edu	37	chr4	119736190	119736190	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagagtacttactgggctaGggatagagtcaggatccagc	14	7	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119736190	C	C	119736190	3	2	29	1	0	0	0	0	1	0	0	0	14110	1000	35	4	2376	4	SEC24D	4	119736190	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	31629397	119736190	71418086	39	43990											
GRIA2	2891	broad.mit.edu	37	chr4	158238861	158238861	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accactacatcattgcaaatCtggtaggtgaattaattggt	8	7	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158238861	G	G	158238861	3	3	29	1	0	0	0	0	1	0	0	0	6834	912	32	4	736	4	GRIA2	4	158238861	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	38502671	158238861	32915415	40	43991											
VEGFC	7424	broad.mit.edu	37	chr4	177632878	177632878	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatggtaaatattggagtCcgaaaaagagtgagattagc	11	3	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177632878	A	A	177632878	1	1	29	0	1	0	0	0	0	0	0	0	17279	870	30	3		3	VEGFC	4	177632878	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	19394017	177632878	13521398	41	43992											
TAS2R1	50834	broad.mit.edu	37	chr5	9629646	9629646	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccagtgtatcttctttttGaattgtggcattttgggaga	11	5	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9629646	T	T	9629646	3	4	29	1	0	0	0	0	1	0	0	0	15684	1299	45	3	404	3	TAS2R1	5	9629646	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08		9629646	171285614	42	43993											
ADAMTS12	81792	broad.mit.edu	37	chr5	33891898	33891898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccatagcaaagcgcccCaaagttaaggagctgagcca	9	13	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33891898	A	A	33891898	3	1	29	1	0	0	0	0	1	0	0	0	257	594	21	2	4816	2	ADAMTS12	5	33891898	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	24262252	33891898	147023362	43	43994											
C5orf42	65250	broad.mit.edu	37	chr5	37210755	37210755	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccatatgctgaatgaaaaGgttaaagtgatgagtgacta	10	4	0	5			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37210755	C	C	37210755	1	2	29	0	1	0	0	0	0	0	0	0	2324	1015	35	4		4	C5orf42	5	37210755	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	3318857	37210755	143704505	44	43995											
FBN2	2201	broad.mit.edu	37	chr5	127636643	127636643	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtgtctttagagaaaaagAagagaaaaaataatttaagc	8	2	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127636643	T	T	127636643	1	4	29	0	1	0	0	0	0	0	0	0	5760	261	9	5		5	FBN2	5	127636643	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	90425888	127636643	53278617	45	43996											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725167	140725167	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctgagatccttcgactacGagcaatttagagacttaaag	9	9	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140725167	A	A	140725167	3	1	29	1	0	0	0	0	1	0	0	0	11649	1059	37	4	1569	4	PCDHGA3	5	140725167	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	13088524	140725167	40190093	46	43997											
ARHGAP26	23092	broad.mit.edu	37	chr5	142264928	142264928	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttagaaaaacacttgaaTttgtcttccaaaaagaaaga	5	6	2	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142264928	G	G	142264928	3	3	29	1	0	0	0	0	1	0	0	0	877	1490	52	5	468	5	ARHGAP26	5	142264928	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	1539761	142264928	38650332	47	43998											
TCERG1	10915	broad.mit.edu	37	chr5	145883476	145883476	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagggaggttcaaaaggcCcgttcagaacaaacaaaaga	11	7	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145883476	A	A	145883476	2	1	29	1	0	0	0	0	0	0	0	1	15807	610	22	2		2	TCERG1	5	145883476	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	3618548	145883476	35031784	48	43999											
HAVCR2	84868	broad.mit.edu	37	chr5	156535979	156535979	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcaggacacagtcaaaggGaagatgtgaaaacatggagc	13	7	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156535979	A	A	156535979	3	1	29	1	0	0	0	0	1	0	0	0	7040	1174	41	4	917	4	HAVCR2	5	156535979	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	10652503	156535979	24379281	49	44000											
FLT4	2324	broad.mit.edu	37	chr5	180057384	180057384	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagggacgtggcggccaggCtgggggagggctccacgggg	23	9	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180057384	G	G	180057384	1	3	29	0	1	0	0	0	0	0	0	0	6002	812	28	4		4	FLT4	5	180057384	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	23521405	180057384	857876	50	44001											
RNF144B	255488	broad.mit.edu	37	chr6	18457500	18457500	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggaatgcccttcttgccAcctgaaattctgctcgtgtt	10	11	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18457500	G	G	18457500	3	3	29	1	0	0	0	0	1	0	0	0	13557	159	6	5	460	5	RNF144B	6	18457500	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08		18457500	152657567	51	44002											
TRIM10	10107	broad.mit.edu	37	chr6	30128630	30128630	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcacagaggcagcagaGgccatgctggtcctgctgct	14	12	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30128630	T	T	30128630	2	4	29	1	0	0	0	0	0	0	0	1	16610	987	35	2		2	TRIM10	6	30128630	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	11671130	30128630	140986437	52	44003											
C6orf138	442213	broad.mit.edu	37	chr6	47846983	47846983	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttaggtcatcctggacgcTgctgttccagtactctaggg	11	11	3	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47846983	G	G	47846983	3	3	29	1	0	0	0	0	1	0	0	0	2355	1580	55	5	947	5	C6orf138	6	47846983	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	17718353	47846983	123268084	53	44004											
TTK	7272	broad.mit.edu	37	chr6	80746194	80746194	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatttttattttaaaggcAttgttcacagtgatcttaaa	7	4	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80746194	C	C	80746194	3	2	29	1	0	0	0	0	1	0	0	0	16846	217	8	5	1989	5	TTK	6	80746194	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	32899211	80746194	90368873	54	44005											
REV3L	5980	broad.mit.edu	37	chr6	111751313	111751313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaagcgagattgagacGgggtggagaatgaggcagaa	17	3	0	6			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111751313	A	A	111751313	1	1	29	0	1	0	0	0	0	0	0	0	13348	1131	39	4		4	REV3L	6	111751313	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	31005119	111751313	59363754	55	44006											
C6orf170	221322	broad.mit.edu	37	chr6	121481258	121481258	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggattatcactctaaaaaaGaagcaagacagatgacttta	7	6	2	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121481258	A	A	121481258	1	1	29	0	1	0	0	0	0	0	0	0	2367	957	33	4		4	C6orf170	6	121481258	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	9729945	121481258	49633809	56	44007											
C6orf191	253582	broad.mit.edu	37	chr6	130164711	130164711	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagccatgagggatttgtttTgaaatcaaatggagccagga	13	5	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130164711	G	G	130164711	3	3	29	1	0	0	0	0	1	0	0	0	2371	1821	63	5	241	5	C6orf191	6	130164711	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	8683453	130164711	40950356	57	44008											
GPR126	57211	broad.mit.edu	37	chr6	142759336	142759336	+	Intron	DEL	T	-	-													agattgatagggtgatgtcaTtttttttttcagattggagt							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142759336	-	-	142759336	6	5	29	0	1	1	0	1	0	0	0	0	6705	1508	52	0		0	GPR126	6	142759336	Intron	DEL	T	TCGA-05-5420-01A-01D-1625-08	12594625	142759336	28355731	58	44009											
KDELR2	11014	broad.mit.edu	37	chr7	6505922	6505922	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgcggaaggatagccacGgactccaggtagatggagaa	15	8	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6505922	A	A	6505922	2	1	29	1	0	0	0	0	0	0	0	1	8190	1103	39	4		4	KDELR2	7	6505922	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08		6505922	152632741	59	44010											
STK31	56164	broad.mit.edu	37	chr7	23793962	23793962	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatcagtgtccgtttcggaAaagacctttcagatgctata	8	9	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23793962	T	T	23793962	4	4	29	1	0	0	0	0	0	1	0	0	15414	15	1	5	1200	5	STK31	7	23793962	Nonsense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	17288040	23793962	135344701	60	44011											
STK31	56164	broad.mit.edu	37	chr7	23794038	23794038	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttgaatggattagagaTaatatgggcagaatacagtc	10	4	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23794038	G	G	23794038	3	3	29	1	0	0	0	0	1	0	0	0	15414	1406	49	5	1276	5	STK31	7	23794038	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	76	23794038	135344625	61	44012											
CHCHD2	51142	broad.mit.edu	37	chr7	56172005	56172005	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacccaatgtgtgccccaCagcagagcccacagccacgc	10	17	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56172005	T	T	56172005	3	4	29	1	0	0	0	0	1	0	0	0	3347	478	17	4	253	4	CHCHD2	7	56172005	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	32377967	56172005	102966658	62	44013											
TRIM50	135892	broad.mit.edu	37	chr7	72732960	72732960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgggtgtgaccccctatcCcctccaggcagcgggccttc	11	18	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72732960	A	A	72732960	3	1	29	1	0	0	0	0	1	0	0	0	16651	623	22	2	892	2	TRIM50	7	72732960	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	16560955	72732960	86405703	63	44014											
CROT	54677	broad.mit.edu	37	chr7	86983855	86983855	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacagaatcaagttatactAgaggtaaacattgcttttct	7	6	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86983855	G	G	86983855	1	3	29	0	1	0	0	0	0	0	0	0	3926	435	15	5		5	CROT	7	86983855	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	14250895	86983855	72154808	64	44015											
ABCB4	5244	broad.mit.edu	37	chr7	87080995	87080995	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgatggccattatcacaaGggtgagcttccatcctctga	10	11	2	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87080995	A	A	87080995	3	1	29	1	0	0	0	0	1	0	0	0	43	1000	35	4	3296	4	ABCB4	7	87080995	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	97140	87080995	72057668	65	44016											
MUC17	140453	broad.mit.edu	37	chr7	100679976	100679976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatacctgtcagcaccacgcCggtactcagttctgaggcta	9	13	3	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100679976	A	A	100679976	3	1	29	1	0	0	0	0	1	0	0	0	10068	652	23	1	5289	1	MUC17	7	100679976	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	13598981	100679976	58458687	66	44017											
MUC17	140453	broad.mit.edu	37	chr7	100685846	100685846	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtagcaccctttcaacaCcttctgttgtcaccagcaca	7	14	3	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100685846	T	T	100685846	3	4	29	1	0	0	0	0	1	0	0	0	10068	507	18	4	11159	4	MUC17	7	100685846	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	5870	100685846	58452817	67	44018											
GPR22	2845	broad.mit.edu	37	chr7	107115089	107115089	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacctgggaaaacaagacacTtttatgtgtcagtacaaatg	8	7	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107115089	A	A	107115089	3	1	29	1	0	0	0	0	1	0	0	0	6747	1609	56	5	586	5	GPR22	7	107115089	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	6429243	107115089	52023574	68	44019											
C7orf58	79974	broad.mit.edu	37	chr7	120704319	120704319	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gattaccagaaatacagcagCcactttgcagaaaggaagga	10	8	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120704319	G	G	120704319	3	3	29	1	0	0	0	0	1	0	0	0	2430	739	26	4	582	4	C7orf58	7	120704319	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	13589230	120704319	38434344	69	44020											
FAM40B	57464	broad.mit.edu	37	chr7	129125534	129125534	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactctgagttttcacctgTggataactgcttgcagagcg	12	9	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129125534	C	C	129125534	3	2	29	1	0	0	0	0	1	0	0	0	5612	1696	59	5	2474	5	FAM40B	7	129125534	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	8421215	129125534	30013129	70	44021											
RAB19	401409	broad.mit.edu	37	chr7	140110849	140110849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagatgagcccccaaatctGgaccaagtgatgagtcagga	11	9	2	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140110849	T	T	140110849	1	4	29	0	1	0	0	0	0	0	0	0	13012	1363	47	2		2	RAB19	7	140110849	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	10985315	140110849	19027814	71	44022											
EPHB6	2051	broad.mit.edu	37	chr7	142568185	142568185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcttggggctagagcctGggaaagccagggagggtaga	20	6	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142568185	T	T	142568185	1	4	29	0	1	0	0	0	0	0	0	0	5220	1363	47	2		2	EPHB6	7	142568185	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	2457336	142568185	16570478	72	44023											
TAS2R60	338398	broad.mit.edu	37	chr7	143141101	143141101	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcactggcgatagcataCggagctactgtgagaaattc	11	8	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143141101	A	A	143141101	2	1	29	1	0	0	0	0	0	0	0	1	15704	527	19	3		3	TAS2R60	7	143141101	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	572916	143141101	15997562	73	44024											
RBPMS	11030	broad.mit.edu	37	chr8	30336930	30336930	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattgtagggggtttccatAtgaggtggtgggaagtaatg	16	2	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30336930	C	C	30336930	1	2	29	0	1	0	0	0	0	0	0	0	13271	464	16	5		5	RBPMS	8	30336930	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08		30336930	116027092	74	44025											
DUSP26	78986	broad.mit.edu	37	chr8	33455066	33455066	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaaccgtggcagctgcagGagtggctgtggtgatgatgg	18	6	0	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33455066	T	T	33455066	1	4	29	0	1	0	0	0	0	0	0	0	4863	1189	41	3		3	DUSP26	8	33455066	5'UTR	SNP	G	TCGA-05-5420-01A-01D-1625-08	3118136	33455066	112908956	75	44026											
PKHD1L1	93035	broad.mit.edu	37	chr8	110455939	110455939	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacttgggaagctctgtGgcaggctgcctagcaacaga	13	10	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110455939	T	T	110455939	2	4	29	1	0	0	0	0	0	0	0	1	12067	1335	47	2		2	PKHD1L1	8	110455939	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	77000873	110455939	35908083	76	44027											
SYBU	55638	broad.mit.edu	37	chr8	110631185	110631185	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagccttcatcacttccagGgcaaaagccaatggggctgt	11	11	2	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110631185	A	A	110631185	3	1	29	1	0	0	0	0	1	0	0	0	15545	1232	43	4	1698	4	SYBU	8	110631185	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	175246	110631185	35732837	77	44028											
FAM135B	51059	broad.mit.edu	37	chr8	139164048	139164048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagagatctggtcctgggGttttcaagtgctatgacgcg	14	7	2	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139164048	T	T	139164048	3	4	29	1	0	0	0	0	1	0	0	0	5495	1252	44	3	1582	3	FAM135B	8	139164048	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	28532863	139164048	7199974	78	44029											
GDA	9615	broad.mit.edu	37	chr9	74838084	74838084	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgtttttccctctcctgcTctgagactttgatgggtgaa	9	11	2	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74838084	A	A	74838084	3	1	29	1	0	0	0	0	1	0	0	0	6369	1551	54	5	681	5	GDA	9	74838084	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08		74838084	66375347	79	44030											
TMC1	117531	broad.mit.edu	37	chr9	75435847	75435847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgctgggccgttatgtGctgcaatgttcctgaggcca	13	11	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75435847	T	T	75435847	3	4	29	1	0	0	0	0	1	0	0	0	16107	1319	46	3	1915	3	TMC1	9	75435847	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	597763	75435847	65777584	80	44031											
ZCCHC6	79670	broad.mit.edu	37	chr9	88924320	88924320	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagaattttagaggaggaGaaaggctcagagatcaccag	12	7	2	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88924320	A	A	88924320	1	1	29	0	1	0	0	0	0	0	0	0	17718	957	33	4		4	ZCCHC6	9	88924320	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	13488473	88924320	52289111	81	44032											
ROR2	4920	broad.mit.edu	37	chr9	94487168	94487168	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accacgcccagcaggcagacGacgttggggtgttgcagccg	15	13	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94487168	A	A	94487168	2	1	29	1	0	0	0	0	0	0	0	1	13638	1045	37	4		4	ROR2	9	94487168	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	5562848	94487168	46726263	82	44033											
CTSL2	1515	broad.mit.edu	37	chr9	99798905	99798905	+	Frame_Shift_Del	DEL	C	-	-													caccattgcagccctgattgCcttgaggacgcgaacagtcc							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99798905	-	-	99798905	7	5	29	1	0	1	0	1	0	0	0	0	4073	739	26	0	499	0	CTSL2	9	99798905	Frame_Shift_Del	DEL	C	TCGA-05-5420-01A-01D-1625-08	5311737	99798905	41414526	83	44034											
OR1N1	138883	broad.mit.edu	37	chr9	125289309	125289309	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacccgtataggagatggtGtgatgccgagtctgtatatt	12	7	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125289309	A	A	125289309	2	1	29	1	0	0	0	0	0	0	0	1	11063	1368	48	4		4	OR1N1	9	125289309	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	25490404	125289309	15924122	84	44035											
NR6A1	2649	broad.mit.edu	37	chr9	127302372	127302372	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgaagccctgttcccagggGaactgtggtcactatcacca	10	14	2	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127302372	C	C	127302372	3	2	29	1	0	0	0	0	1	0	0	0	10732	1174	41	4	930	4	NR6A1	9	127302372	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	2013063	127302372	13911059	85	44036											
WDR38	401551	broad.mit.edu	37	chr9	127619095	127619095	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgaagggccatgtcaccTgggtgaagagcatagccttc	12	10	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127619095	A	A	127619095	3	1	29	1	0	0	0	0	1	0	0	0	17419	1580	55	5	729	5	WDR38	9	127619095	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	316723	127619095	13594336	86	44037											
ITIH5	80760	broad.mit.edu	37	chr10	7618423	7618423	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcctcgtacctggctgCgtgccagctcctcgcacgct	12	16	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7618423	T	T	7618423	2	4	29	1	0	0	0	0	0	0	0	1	7977	755	27	4		4	ITIH5	10	7618423	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08		7618423	127916324	87	44038											
MSRB2	22921	broad.mit.edu	37	chr10	23408331	23408331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacacagggatcctgagacGtctggatacctcgttaggat	11	11	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23408331	T	T	23408331	3	4	29	1	0	0	0	0	1	0	0	0	9982	1145	40	3	409	3	MSRB2	10	23408331	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	15789908	23408331	112126416	88	44039											
GPR158	57512	broad.mit.edu	37	chr10	25886922	25886922	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaggcactgccctcatcagGaagaaccccccagagtcttc	8	15	3	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25886922	C	C	25886922	3	2	29	1	0	0	0	0	1	0	0	0	6728	1165	41	4	2409	4	GPR158	10	25886922	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	2478591	25886922	109647825	89	44040											
ARHGAP12	94134	broad.mit.edu	37	chr10	32097701	32097702	+	Intron	INS	-	TATTT	TATTT													gaaaaaagataataaccagaINStattttacagcaaattctta							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TATTT	32097702	TATTT	TATTT	32097701	6	5	29	0	1	1	1	0	0	0	0	0	867	348	12	0		0	ARHGAP12	10	32097701	Intron	INS	-	TCGA-05-5420-01A-01D-1625-08	6210779	32097701	103437046	90	44041											
BMS1	9790	broad.mit.edu	37	chr10	43315759	43315759	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttcgacctgggatgtacGtccgcattgagattgaaaat	11	7	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43315759	A	A	43315759	3	1	29	1	0	0	0	0	1	0	0	0	1478	1145	40	4	2714	4	BMS1	10	43315759	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	11218058	43315759	92218988	91	44042											
ANK3	288	broad.mit.edu	37	chr10	61843483	61843483	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgttactatgttacacgtgTctctattaggcagttacttc	7	9	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61843483	A	A	61843483	1	1	29	0	1	0	0	0	0	0	0	0	622	1682	58	5		5	ANK3	10	61843483	Intron	SNP	T	TCGA-05-5420-01A-01D-1625-08	18527724	61843483	73691264	92	44043											
JMJD1C	221037	broad.mit.edu	37	chr10	64952671	64952671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatactatactcctctcacaCatgcctagataatcaattat	2	11	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64952671	A	A	64952671	1	1	29	0	1	0	0	0	0	0	0	0	8020	493	17	3		3	JMJD1C	10	64952671	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	3109188	64952671	70582076	93	44044											
LRRTM3	347731	broad.mit.edu	37	chr10	68687143	68687143	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacagtttcggggcttgCggaagctgctgagtttacat	13	8	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68687143	A	A	68687143	2	1	29	1	0	0	0	0	0	0	0	1	9128	759	27	3		3	LRRTM3	10	68687143	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	3734472	68687143	66847604	94	44045											
CWF19L1	55280	broad.mit.edu	37	chr10	102013410	102013410	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatgaatacagatgtggaCagaaggaactgcacattgaa	10	6	0	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102013410	T	T	102013410	1	4	29	0	1	0	0	0	0	0	0	0	4104	493	17	4		4	CWF19L1	10	102013410	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	33326267	102013410	33521337	95	44046											
FAM178A	55719	broad.mit.edu	37	chr10	102678196	102678196	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgattcatgggaacctacttCaggtagaatcaaaattaaat	7	6	3	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102678196	T	T	102678196	3	4	29	1	0	0	0	0	1	0	0	0	5548	838	29	4	985	4	FAM178A	10	102678196	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	664786	102678196	32856551	96	44047											
LHPP	64077	broad.mit.edu	37	chr10	126301952	126301968	+	3'UTR	DEL	CTCCTCCACCCCTGCCT	-	-													gcctcctgggagagccccgcCtcctccacccctgcctctcc							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126301968	-	-	126301952	6	5	29	0	1	1	0	1	0	0	0	0	8841	696	24	0		0	LHPP	10	126301952	3'UTR	DEL	CTCCTCCACCCCTGCCT	TCGA-05-5420-01A-01D-1625-08	23623756	126301952	9232795	97	44048											
EBF3	253738	broad.mit.edu	37	chr10	131761176	131761176	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggagagccagccgctgcAggggcggcgagcacgcagca	17	12	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131761176	T	T	131761176	1	4	29	0	1	0	0	0	0	0	0	0	4922	203	7	5		5	EBF3	10	131761176	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	5459224	131761176	3773571	98	44049											
VENTX	27287	broad.mit.edu	37	chr10	135053498	135053498	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatgcaggacccccagctGcacagccccttctcggggtc	10	17	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135053498	A	A	135053498	2	1	29	1	0	0	0	0	0	0	0	1	17280	1306	46	4		4	VENTX	10	135053498	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	3292322	135053498	481249	99	44050											
SLC22A18	5002	broad.mit.edu	37	chr11	2940480	2940480	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgaggcgggagggaggTgggcgccaaggtcggggtgt	23	7	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2940480	G	G	2940480	1	3	29	0	1	0	0	0	0	0	0	0	14562	1711	59	5		5	SLC22A18	11	2940480	Intron	SNP	T	TCGA-05-5420-01A-01D-1625-08		2940480	132066036	100	44051											
OR52R1	119695	broad.mit.edu	37	chr11	4824855	4824855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctgggatataaagagcCaagatgacacagatatggga	14	5	0	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4824855	A	A	4824855	3	1	29	1	0	0	0	0	1	0	0	0	11225	593	21	2	194	2	OR52R1	11	4824855	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	1884375	4824855	130181661	101	44052											
OR52N1	79473	broad.mit.edu	37	chr11	5809322	5809322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaagtgggcagtgcagGtgctgaaggccttctgtcga	15	9	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5809322	T	T	5809322	3	4	29	1	0	0	0	0	1	0	0	0	11221	1261	44	3	240	3	OR52N1	11	5809322	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	984467	5809322	129197194	102	44053											
ST5	6764	broad.mit.edu	37	chr11	8751902	8751902	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagtcttccttttccccCggtccacgctgtagcagctg	8	16	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8751902	T	T	8751902	3	4	29	1	0	0	0	0	1	0	0	0	15338	652	23	4	2550	4	ST5	11	8751902	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	2942580	8751902	126254614	103	44054											
TSG101	7251	broad.mit.edu	37	chr11	18512010	18512010	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaaattaagtgccagaccAagtcaaactggatgtgtagg	12	6	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18512010	T	T	18512010	1	4	29	0	1	0	0	0	0	0	0	0	16741	145	5	5		5	TSG101	11	18512010	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	9760108	18512010	116494506	104	44055											
BDNF	627	broad.mit.edu	37	chr11	27742963	27742963	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttattgctactcaccattGtgcctttgctgtcctggaga	8	10	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27742963	T	T	27742963	1	4	29	0	1	0	0	0	0	0	0	0	1399	1392	48	3		3	BDNF	11	27742963	5'UTR	SNP	G	TCGA-05-5420-01A-01D-1625-08	9230953	27742963	107263553	105	44056											
OR4A16	81327	broad.mit.edu	37	chr11	55110891	55110891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttatggatgccatatattCcactgccatgtcacccaaat	5	12	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55110891	A	A	55110891	3	1	29	1	0	0	0	0	1	0	0	0	11135	855	30	3	217	3	OR4A16	11	55110891	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	27367928	55110891	79895625	106	44057											
OR1S2	219958	broad.mit.edu	37	chr11	57971611	57971611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtttggttttcttgatGcatatttctgctgatctgaa	11	5	3	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57971611	T	T	57971611	3	4	29	1	0	0	0	0	1	0	0	0	11067	1319	46	3	937	3	OR1S2	11	57971611	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	2860720	57971611	77034905	107	44058											
MS4A4A	51338	broad.mit.edu	37	chr11	60070111	60070111	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcaacacatttagcttggCgttttattcattccatcacc	4	11	3	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60070111	T	T	60070111	3	4	29	1	0	0	0	0	1	0	0	0	9956	768	27	4	485	4	MS4A4A	11	60070111	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	2098500	60070111	74936405	108	44059											
DNAJC4	3338	broad.mit.edu	37	chr11	63999376	63999376	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttattatgaactgttgggGgtgcatcctggtgccagcac	12	9	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63999376	A	A	63999376	2	1	29	1	0	0	0	0	0	0	0	1	4689	1219	43	4		4	DNAJC4	11	63999376	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	3929265	63999376	71007140	109	44060											
GAL3ST3	89792	broad.mit.edu	37	chr11	65810949	65810949	+	Frame_Shift_Del	DEL	G	-	-													gaagtgcgccgagaagttgcGggggtagcagaactggtgct							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65810949	-	-	65810949	7	5	29	1	0	1	0	1	0	0	0	0	6261	1116	39	0	974	0	GAL3ST3	11	65810949	Frame_Shift_Del	DEL	G	TCGA-05-5420-01A-01D-1625-08	1811573	65810949	69195567	110	44061											
CAPN5	726	broad.mit.edu	37	chr11	76829343	76829343	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcatgaggacccgcgacAgaaccgcggtggcggctgca	16	13	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76829343	G	G	76829343	3	3	29	1	0	0	0	0	1	0	0	0	2655	188	7	5	1138	5	CAPN5	11	76829343	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	11018394	76829343	58177173	111	44062											
USP28	57646	broad.mit.edu	37	chr11	113702712	113702712	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtgtgaattcactcacatCttgctataagagaggcacaa	9	8	3	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113702712	T	T	113702712	3	4	29	1	0	0	0	0	1	0	0	0	17185	913	32	4	2542	4	USP28	11	113702712	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	36873369	113702712	21303804	112	44063											
ANO2	57101	broad.mit.edu	37	chr12	5963187	5963187	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccctcaggaggcccagaaCccaggagaaacatgctcata	10	13	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5963187	G	G	5963187	1	3	29	0	1	0	0	0	0	0	0	0	697	522	18	4		4	ANO2	12	5963187	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08		5963187	127888708	113	44064											
C3AR1	719	broad.mit.edu	37	chr12	8211605	8211605	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggactccaaaaatgtggtAtggagtccagcagacaagaa	11	8	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8211605	G	G	8211605	3	3	29	1	0	0	0	0	1	0	0	0	2227	449	16	5	275	5	C3AR1	12	8211605	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	2248418	8211605	125640290	114	44065											
OLR1	4973	broad.mit.edu	37	chr12	10312420	10312420	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacccaagtgacaaagaatAgcttaaattccagaataaaa	6	8	0	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10312420	C	C	10312420	1	2	29	0	1	0	0	0	0	0	0	0	10957	435	15	5		5	OLR1	12	10312420	3'UTR	SNP	A	TCGA-05-5420-01A-01D-1625-08	2100815	10312420	123539475	115	44066											
ETNK1	55500	broad.mit.edu	37	chr12	22824158	22824158	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatagcatagggattttctGatcttatatgtgatttctta	7	4	3	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22824158	C	C	22824158	1	2	29	0	1	0	0	0	0	0	0	0	5315	1305	45	4		4	ETNK1	12	22824158	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	12511738	22824158	111027737	116	44067											
ABCD2	225	broad.mit.edu	37	chr12	39947886	39947886	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtatccaattgttcaaagCgccaacctccttcaccatca	4	15	3	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39947886	T	T	39947886	3	4	29	1	0	0	0	0	1	0	0	0	61	768	27	4	175	4	ABCD2	12	39947886	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	17123728	39947886	93904009	117	44068											
MON2	23041	broad.mit.edu	37	chr12	62938755	62938755	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttattaaagcaggattaacAtttaaccatgatcctccact	4	10	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62938755	T	T	62938755	2	4	29	1	0	0	0	0	0	0	0	1	9794	204	8	5		5	MON2	12	62938755	Silent	SNP	A	TCGA-05-5420-01A-01D-1625-08	22990869	62938755	70913140	118	44069											
LEMD3	23592	broad.mit.edu	37	chr12	65639581	65639581	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacttttggtattgaatttCatgttttggatttgttgcta	8	3	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65639581	T	T	65639581	1	4	29	0	1	0	0	0	0	0	0	0	8793	841	29	4		4	LEMD3	12	65639581	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	2700826	65639581	68212314	119	44070											
TMEM19	55266	broad.mit.edu	37	chr12	72091178	72091178	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgatttttccaagcagtaCtccgcttcctggatgtgttt	9	10	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72091178	A	A	72091178	4	1	29	1	0	0	0	0	0	1	0	0	16236	576	20	3	515	3	TMEM19	12	72091178	Nonsense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	6451597	72091178	61760717	120	44071											
NR1H4	9971	broad.mit.edu	37	chr12	100928726	100928726	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaatgtgaagcagcaTgcagatcagaccgtgaatga	11	6	1	6			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100928726	C	C	100928726	2	2	29	1	0	0	0	0	0	0	0	1	10714	1461	51	5		5	NR1H4	12	100928726	Silent	SNP	T	TCGA-05-5420-01A-01D-1625-08	28837548	100928726	32923169	121	44072											
UBC	7316	broad.mit.edu	37	chr12	125397791	125397791	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatctttgccttgacattcTcgatggtgtcactgggctcc	11	11	3	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125397791	G	G	125397791	3	3	29	1	0	0	0	0	1	0	0	0	16968	1551	54	5	1534	5	UBC	12	125397791	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	24469065	125397791	8454104	122	44073											
TMEM132B	114795	broad.mit.edu	37	chr12	125834457	125834457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaggccagggaagtggCagccagctgtcggctgcaag	16	12	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125834457	A	A	125834457	3	1	29	1	0	0	0	0	1	0	0	0	16169	710	25	3	518	3	TMEM132B	12	125834457	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	436666	125834457	8017438	123	44074											
ZNF10	7556	broad.mit.edu	37	chr12	133727632	133727632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agacactggtgaccttcaagGatgtatttgtggacttcacc	10	9	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133727632	T	T	133727632	3	4	29	1	0	0	0	0	1	0	0	0	17838	1174	41	3	58	3	ZNF10	12	133727632	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	7893175	133727632	124263	124	44075											
RNF17	56163	broad.mit.edu	37	chr13	25352325	25352327	+	Intron	DEL	GGG	-	-													tgggatgatcgctggagcctGggaagtcgaggctgccatga							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25352327	-	-	25352325	6	5	29	0	1	1	0	1	0	0	0	0	13572	1363	47	0		0	RNF17	13	25352325	Intron	DEL	GGG	TCGA-05-5420-01A-01D-1625-08		25352325	89817553	125	44076											
BRCA2	675	broad.mit.edu	37	chr13	32972945	32972945	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaattattgacgcttaaCctttccagtttataagactg	5	7	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32972945	T	T	32972945	1	4	29	0	1	0	0	0	0	0	0	0	1508	522	18	4		4	BRCA2	13	32972945	3'UTR	SNP	C	TCGA-05-5420-01A-01D-1625-08	7620620	32972945	82196933	126	44077											
OLFM4	10562	broad.mit.edu	37	chr13	53624329	53624329	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctattgtatataaatgctcGagagttgcggatcacctatg	10	7	1	1	rs144683972		TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53624329	A	A	53624329	3	1	29	1	0	0	0	0	1	0	0	0	10950	1058	37	4	974	4	OLFM4	13	53624329	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	20651384	53624329	61545549	127	44078											
TDRD3	81550	broad.mit.edu	37	chr13	61034715	61034715	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtatttgttacagaatgttGaaggtgctattcaattggaa	10	3	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61034715	A	A	61034715	1	1	29	0	1	0	0	0	0	0	0	0	15854	1305	45	4		4	TDRD3	13	61034715	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	7410386	61034715	54135163	128	44079											
ERCC5	2073	broad.mit.edu	37	chr13	103474215	103474215	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggtatgaagaccctcttaGaggcaatatcgtgtttctag	11	7	2	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103474215	A	A	103474215	1	1	29	0	1	0	0	0	0	0	0	0	5258	957	33	4		4	ERCC5	13	103474215	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	42439500	103474215	11695663	129	44080											
COL4A1	1282	broad.mit.edu	37	chr13	110822018	110822018	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcccttgggccctgggacAccgggtgctcctggccagcc	13	17	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110822018	G	G	110822018	2	3	29	1	0	0	0	0	0	0	0	1	3721	146	6	5		5	COL4A1	13	110822018	Silent	SNP	A	TCGA-05-5420-01A-01D-1625-08	7347803	110822018	4347860	130	44081											
FITM1	161247	broad.mit.edu	37	chr14	24600930	24600930	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgggcagcccctgcttacGgcgcctctaccatgcctggc	11	17	2	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24600930	C	C	24600930	3	2	29	1	0	0	0	0	1	0	0	0	5955	1116	39	4	160	4	FITM1	14	24600930	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08		24600930	82748610	131	44082											
RIPK3	11035	broad.mit.edu	37	chr14	24808294	24808294	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagcaccgggttctggTcgtgcaggtaaaacatccca	13	11	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24808294	A	A	24808294	3	1	29	1	0	0	0	0	1	0	0	0	13493	1667	58	5	1190	5	RIPK3	14	24808294	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	207364	24808294	82541246	132	44083											
ARID4A	5926	broad.mit.edu	37	chr14	58831476	58831476	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaggaccagtgattgtaTtggatctgagggaatgaaaa	13	3	1	4			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58831476	C	C	58831476	3	2	29	1	0	0	0	0	1	0	0	0	921	1493	52	5	2743	5	ARID4A	14	58831476	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	34023182	58831476	48518064	133	44084											
RCOR1	23186	broad.mit.edu	37	chr14	103167704	103167704	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttttgctgttaaaaaAtgagtatttgtaactaaata	5	4	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103167704	G	G	103167704	1	3	29	0	1	0	0	0	0	0	0	0	13290	116	4	5		5	RCOR1	14	103167704	Intron	SNP	A	TCGA-05-5420-01A-01D-1625-08	44336228	103167704	4181836	134	44085											
OCA2	4948	broad.mit.edu	37	chr15	28141074	28141074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggggatatgatagtaCgcacagcatatgcatgtgaa	12	6	0	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28141074	A	A	28141074	1	1	29	0	1	0	0	0	0	0	0	0	10910	551	19	3		3	OCA2	15	28141074	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08		28141074	74390318	135	44086											
SPG11	80208	broad.mit.edu	37	chr15	44955626	44955627	+	Missense_Mutation	DNP	CC	AA	AA													caggcagcagcgacccccgcCccggctgccaggcgtcaaag							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44955627	AA	AA	44955626	3	1	29	1	0	0	0	0	1	0	0	0	15159	623	22	2	7271	2	SPG11	15	44955626	Missense_Mutation	DNP	CC	TCGA-05-5420-01A-01D-1625-08	16814552	44955626	57575766	136	44087											
FANCI	55215	broad.mit.edu	37	chr15	89811675	89811676	+	Nonsense_Mutation	DNP	GG	CT	CT													tcaggtgaacttcgtcatgtGgaaggcaccattattctaca							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	89811676	CT	CT	89811675	4	2	29	1	0	0	0	0	0	1	0	0	5726	1335	47	4	835	4	FANCI	15	89811675	Nonsense_Mutation	DNP	GG	TCGA-05-5420-01A-01D-1625-08	44856049	89811675	12719717	137	44088											
SPATA8	145946	broad.mit.edu	37	chr15	97327418	97327418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcagaagccatgacatGtccctgcggctggaggcctt	11	12	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97327418	T	T	97327418	3	4	29	1	0	0	0	0	1	0	0	0	15131	1377	48	3	131	3	SPATA8	15	97327418	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	7515743	97327418	5203974	138	44089											
TPSAB1	7177	broad.mit.edu	37	chr16	1291189	1291189	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcgagtgggcatcgtcGggggtcaggaggcccccagg	19	11	1	0	rs143010092		TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1291189	A	A	1291189	3	1	29	1	0	0	0	0	1	0	0	0	16547	1116	39	4	103	4	TPSAB1	16	1291189	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08		1291189	89063564	139	44090											
TPSAB1	7177	broad.mit.edu	37	chr16	1291244	1291244	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtgagcctgagagtccAcggcccatactggatgcact	13	12	0	2	rs150845192		TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1291244	G	G	1291244	3	3	29	1	0	0	0	0	1	0	0	0	16547	159	6	5	158	5	TPSAB1	16	1291244	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	55	1291244	89063509	140	44091											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1798647	1798647	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttcggcatcaacaccgActccctgtaccatgagctgt	8	14	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1798647	G	G	1798647	3	3	29	1	0	0	0	0	1	0	0	0	9378	275	10	5	1169	5	MAPK8IP3	16	1798647	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	507403	1798647	88556106	141	44092											
PRSS22	64063	broad.mit.edu	37	chr16	2906186	2906186	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcacgatccagggccactCgctgtcagtgctgtcctcgc	11	16	2	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2906186	A	A	2906186	4	1	29	1	0	0	0	0	0	1	0	0	12725	893	31	3	791	3	PRSS22	16	2906186	Nonsense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	1107539	2906186	87448567	142	44093											
TMEM188	255919	broad.mit.edu	37	chr16	50063717	50063717	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagacacaaaaggtagaagTtttgttttaaaatcattagc	8	4	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50063717	C	C	50063717	1	2	29	0	1	0	0	0	0	0	0	0	16233	1740	60	5		5	TMEM188	16	50063717	Intron	SNP	T	TCGA-05-5420-01A-01D-1625-08	47157531	50063717	40291036	143	44094											
SLC12A3	6559	broad.mit.edu	37	chr16	56906506	56906506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggctgcctgcccagtggGtcccagcaaggggggtcaag	18	11	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56906506	T	T	56906506	1	4	29	0	1	0	0	0	0	0	0	0	14497	1276	44	3		3	SLC12A3	16	56906506	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	6842789	56906506	33448247	144	44095											
CNTNAP4	85445	broad.mit.edu	37	chr16	76513453	76513453	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggtgagttaatcagctttTattttacagttaaatttgca	7	6	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76513453	A	A	76513453	1	1	29	0	1	0	0	0	0	0	0	0	3681	1769	61	5		5	CNTNAP4	16	76513453	Intron	SNP	T	TCGA-05-5420-01A-01D-1625-08	19606947	76513453	13841300	145	44096											
CHD3	1107	broad.mit.edu	37	chr17	7809897	7809897	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtctttgttcatgcgccAtctgtgtgagcctggggcag	14	9	3	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7809897	G	G	7809897	3	3	29	1	0	0	0	0	1	0	0	0	3357	217	8	5	4780	5	CHD3	17	7809897	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08		7809897	73385313	146	44097											
C17orf103	256302	broad.mit.edu	37	chr17	21146727	21146727	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggtcctcctccaccaCgaagtccagggcggcctggg	12	16	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21146727	T	T	21146727	3	4	29	1	0	0	0	0	1	0	0	0	1864	536	19	4		4	C17orf103	17	21146727	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	13336830	21146727	60048483	147	44098											
ACCN1	40	broad.mit.edu	37	chr17	32365961	32365961	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcataaccatctgtccacTgctcagtaaatttggctccg	7	12	2	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32365961	G	G	32365961	1	3	29	0	1	0	0	0	0	0	0	0	128	1595	55	5		5	ACCN1	17	32365961	Intron	SNP	T	TCGA-05-5420-01A-01D-1625-08	11219234	32365961	48829249	148	44099											
KRT31	3881	broad.mit.edu	37	chr17	39552755	39552755	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcggacttgcacagggtcaGctcatccaggatcctgcgca	12	13	2	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39552755	C	C	39552755	3	2	29	1	0	0	0	0	1	0	0	0	8538	962	34	4	765	4	KRT31	17	39552755	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	7186794	39552755	41642455	149	44100											
KRT35	3886	broad.mit.edu	37	chr17	39636983	39636983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcggctctccaggctggCgttctcctgctccagctgac	12	15	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39636983	A	A	39636983	3	1	29	1	0	0	0	0	1	0	0	0	8543	768	27	3	1028	3	KRT35	17	39636983	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	84228	39636983	41558227	150	44101											
BRCA1	672	broad.mit.edu	37	chr17	41245544	41245544	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaggttctttaccttccatGagttgtaggtttctgctgtg	11	8	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41245544	A	A	41245544	2	1	29	1	0	0	0	0	0	0	0	1	1507	1277	45	4		4	BRCA1	17	41245544	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	1608561	41245544	39949666	151	44102											
MPP2	4355	broad.mit.edu	37	chr17	41958760	41958760	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgcctgagcaagaggacCcctccctgtgccctcgccct	9	18	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41958760	T	T	41958760	1	4	29	0	1	0	0	0	0	0	0	0	9828	638	22	4		4	MPP2	17	41958760	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	713216	41958760	39236450	152	44103											
COX11	1353	broad.mit.edu	37	chr17	53045706	53045706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcatgcccacggcgacaGcggccacgtaagtgagggtc	14	14	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53045706	T	T	53045706	3	4	29	1	0	0	0	0	1	0	0	0	3795	971	34	3	610	3	COX11	17	53045706	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	11086946	53045706	28149504	153	44104											
SCN4A	6329	broad.mit.edu	37	chr17	62020630	62020630	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggttgtggtggagtcagcCaggggaggaggggtgaccca	22	6	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62020630	G	G	62020630	1	3	29	0	1	0	0	0	0	0	0	0	14033	609	21	4		4	SCN4A	17	62020630	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	8974924	62020630	19174580	154	44105											
LRRC37A3	374819	broad.mit.edu	37	chr17	62851875	62851875	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttgccgtgagccgagatcGcgtcattgcactccagcctg	13	13	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62851875	A	A	62851875	1	1	29	0	1	0	0	0	0	0	0	0	9080	1102	38	4		4	LRRC37A3	17	62851875	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	831245	62851875	18343335	155	44106											
CACNG4	27092	broad.mit.edu	37	chr17	65021068	65021068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggcaggatctacagcCgcaagaacaacatcgtcctc	10	13	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65021068	A	A	65021068	3	1	29	1	0	0	0	0	1	0	0	0	2585	652	23	1	407	1	CACNG4	17	65021068	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	2169193	65021068	16174142	156	44107											
SLC25A10	1468	broad.mit.edu	37	chr17	79682037	79682037	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgacgggcatggcgctgCgggtggtgcgtaccgacggc	19	11	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79682037	T	T	79682037	3	4	29	1	0	0	0	0	1	0	0	0	14586	759	27	4	154	4	SLC25A10	17	79682037	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	14660969	79682037	1513173	157	44108											
SLC39A6	25800	broad.mit.edu	37	chr18	33694106	33694106	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaggccatcacccattatCaccatccaggccagagtggc	9	15	2	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33694106	A	A	33694106	2	1	29	1	0	0	0	0	0	0	0	1	14736	813	29	3		3	SLC39A6	18	33694106	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08		33694106	44383142	158	44109											
MYO5B	4645	broad.mit.edu	37	chr18	47581607	47581607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccctgccccacctcacCcccgcccccctgccccggac	6	27	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47581607	A	A	47581607	1	1	29	0	1	0	0	0	0	0	0	0	10173	638	22	2		2	MYO5B	18	47581607	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	13887501	47581607	30495641	159	44110											
XAB2	56949	broad.mit.edu	37	chr19	7691039	7691039	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctggtagttggacttgcCggccttagacacgaaacgct	11	12	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7691039	T	T	7691039	3	4	29	1	0	0	0	0	1	0	0	0	17545	652	23	4	1987	4	XAB2	19	7691039	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08		7691039	51437944	160	44111											
S1PR2	9294	broad.mit.edu	37	chr19	10334757	10334757	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaattcagggtggagacGgcgaaaaagtagtgggcttt	17	4	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10334757	A	A	10334757	2	1	29	1	0	0	0	0	0	0	0	1	13905	1103	39	4		4	S1PR2	19	10334757	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	2643718	10334757	48794226	161	44112											
SMARCA4	6597	broad.mit.edu	37	chr19	11100015	11100015	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggctcgcatcgcacacCgaattcaggaacttgaaaac	9	12	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11100015	T	T	11100015	4	4	29	1	0	0	0	0	0	1	0	0	14884	644	23	4	1163	4	SMARCA4	19	11100015	Nonsense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	765258	11100015	48028968	162	44113											
CPAMD8	27151	broad.mit.edu	37	chr19	17058020	17058020	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactggatgcccttgggaacCgagagcttcatgtacacctg	11	11	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17058020	T	T	17058020	2	4	29	1	0	0	0	0	0	0	0	1	3827	639	23	4		4	CPAMD8	19	17058020	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	5958005	17058020	42070963	163	44114											
UNC13A	23025	broad.mit.edu	37	chr19	17721035	17721035	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgtaatcccaccacttcggGaggccaaggcgggtggatca	13	11	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17721035	A	A	17721035	1	1	29	0	1	0	0	0	0	0	0	0	17110	1189	41	4		4	UNC13A	19	17721035	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	663015	17721035	41407948	164	44115											
UNC13A	23025	broad.mit.edu	37	chr19	17728680	17728680	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggggaggacagggtggggaGaggtgaggatggtgggaacc	24	3	0	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17728680	A	A	17728680	1	1	29	0	1	0	0	0	0	0	0	0	17110	957	33	4		4	UNC13A	19	17728680	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	7645	17728680	41400303	165	44116											
UNC13A	23025	broad.mit.edu	37	chr19	17728695	17728695	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggagaggtgaggatggtgGgaacctctacccactcatag	16	8	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17728695	A	A	17728695	1	1	29	0	1	0	0	0	0	0	0	0	17110	1247	43	4		4	UNC13A	19	17728695	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	15	17728695	41400288	166	44117											
HOMER3	9454	broad.mit.edu	37	chr19	19042357	19042357	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcttccagctgttccagCgactggccctggcccagccc	11	17	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19042357	T	T	19042357	2	4	29	1	0	0	0	0	0	0	0	1	7347	755	27	4		4	HOMER3	19	19042357	Silent	SNP	C	TCGA-05-5420-01A-01D-1625-08	1313662	19042357	40086626	167	44118											
ZNF486	90649	broad.mit.edu	37	chr19	20308637	20308637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgcataagataattcataCtggagagaaaccatacaaat	6	6	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20308637	T	T	20308637	3	4	29	1	0	0	0	0	1	0	0	0	18066	565	20	4	1132	4	ZNF486	19	20308637	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	1266280	20308637	38820346	168	44119											
ZNF708	7562	broad.mit.edu	37	chr19	21512216	21512216	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcgtgtctgagtgaaCtgtccccagctcagagtccc	11	14	2	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21512216	A	A	21512216	1	1	29	0	1	0	0	0	0	0	0	0	18240	580	20	3		3	ZNF708	19	21512216	5'Flank	SNP	C	TCGA-05-5420-01A-01D-1625-08	1203579	21512216	37616767	169	44120											
CCNE1	898	broad.mit.edu	37	chr19	30312666	30312666	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgcaccagtttgcgtatgTgacagatggagcttgttcag	13	7	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30312666	A	A	30312666	3	1	29	1	0	0	0	0	1	0	0	0	2950	1696	59	5	673	5	CCNE1	19	30312666	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08	8800450	30312666	28816317	170	44121											
ZNF536	9745	broad.mit.edu	37	chr19	31025842	31025842	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctcggccatgaaggactgCccgtactgtgggaaaacttt	13	10	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31025842	G	G	31025842	3	3	29	1	0	0	0	0	1	0	0	0	18101	747	26	4	2265	4	ZNF536	19	31025842	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	713176	31025842	28103141	171	44122											
FCGBP	8857	broad.mit.edu	37	chr19	40408275	40408275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaaagtttcagtcctccAgggctccacgtggcctccag	10	14	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40408275	T	T	40408275	3	4	29	1	0	0	0	0	1	0	0	0	5835	188	7	5	11769	5	FCGBP	19	40408275	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	9382433	40408275	18720708	172	44123											
ZNF155	7711	broad.mit.edu	37	chr19	44495759	44495760	+	Missense_Mutation	DNP	GG	AA	AA													gaggaggagctggggctgctGgaccctgcccagaggaagct							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44495760	AA	AA	44495759	3	1	29	1	0	0	0	0	1	0	0	0	17862	1335	47	4	81	4	ZNF155	19	44495759	Missense_Mutation	DNP	GG	TCGA-05-5420-01A-01D-1625-08	4087484	44495759	14633224	173	44124											
ZNF223	7766	broad.mit.edu	37	chr19	44570427	44570427	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaggacagaaaccttccaAttgtgggaagtgtaaacaat	9	8	0	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44570427	G	G	44570427	3	3	29	1	0	0	0	0	1	0	0	0	17903	101	4	5	460	5	ZNF223	19	44570427	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08	74668	44570427	14558556	174	44125											
CEACAM20	125931	broad.mit.edu	37	chr19	45015298	45015298	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acactcttcagggaccgagaGagtggaaggaatctgttcag	13	8	4	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45015298	C	C	45015298	1	2	29	0	1	0	0	0	0	0	0	0	3221	957	33	4		4	CEACAM20	19	45015298	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	444871	45015298	14113685	175	44126											
PPM1N	147699	broad.mit.edu	37	chr19	46005256	46005256	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaatttctcattaccttctCccacattttgtgttacagaa	4	10	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46005256	A	A	46005256	1	1	29	0	1	0	0	0	0	0	0	0	12447	870	30	3		3	PPM1N	19	46005256	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	989958	46005256	13123727	176	44127											
C5AR1	728	broad.mit.edu	37	chr19	47823129	47823129	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggataaaacttctaacaCgctgcgtgttccagacatcc	8	11	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47823129	T	T	47823129	3	4	29	1	0	0	0	0	1	0	0	0	2304	536	19	4	100	4	C5AR1	19	47823129	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	1817873	47823129	11305854	177	44128											
LRRC4B	94030	broad.mit.edu	37	chr19	51022162	51022162	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcgtcgaaggcgttgcGctcgatggtggctacctggg	18	9	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51022162	A	A	51022162	3	1	29	1	0	0	0	0	1	0	0	0	9094	1087	38	4	1337	4	LRRC4B	19	51022162	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	3199033	51022162	8106821	178	44129											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52148735	52148735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggtctttcctacctgtgCctgtgccatttctgaagaag	11	10	2	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52148735	A	A	52148735	3	1	29	1	0	0	0	0	1	0	0	0	14422	739	26	3	457	3	SIGLEC14	19	52148735	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	1126573	52148735	6980248	179	44130											
TTYH1	57348	broad.mit.edu	37	chr19	54937858	54937858	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctcccaggtggctggCctacgtcctcctgctgctcc	9	20	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54937858	T	T	54937858	3	4	29	1	0	0	0	0	1	0	0	0	16865	739	26	4	665	4	TTYH1	19	54937858	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	2789123	54937858	4191125	180	44131											
KIR2DL3	3804	broad.mit.edu	37	chr19	55258664	55258664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattacggaaaaaaggatcCcaggactcccagggcccaat	9	11	0	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55258664	A	A	55258664	1	1	29	0	1	0	0	0	0	0	0	0	8388	638	22	2		2	KIR2DL3	19	55258664	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	320806	55258664	3870319	181	44132											
SIRPB2	284759	broad.mit.edu	37	chr20	1456807	1456807	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtcctcactctggggctgAcccctcactcttgacccttg	10	16	4	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1456807	T	T	1456807	1	4	29	0	1	0	0	0	0	0	0	0	14447	290	10	5		5	SIRPB2	20	1456807	3'UTR	SNP	A	TCGA-05-5420-01A-01D-1625-08		1456807	61568713	182	44133											
SIGLEC1	6614	broad.mit.edu	37	chr20	3686514	3686514	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctccaggtggccgacgcCggtgggctcaaacttctggc	15	13	3	0	rs111336308	by1000genomes	TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3686514	T	T	3686514	3	4	29	1	0	0	0	0	1	0	0	0	14418	652	23	4	4622	4	SIGLEC1	20	3686514	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	2229707	3686514	59339006	183	44134											
CD93	22918	broad.mit.edu	37	chr20	23065344	23065344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactggctgttgcagcacGgggcacggtgctcccttctt	15	12	1	0	rs148539804		TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23065344	T	T	23065344	3	4	29	1	0	0	0	0	1	0	0	0	3077	1116	39	1	480	1	CD93	20	23065344	Missense_Mutation	SNP	G	TCGA-05-5420-01A-01D-1625-08	19378830	23065344	39960176	184	44135											
RALGAPB	57148	broad.mit.edu	37	chr20	37195717	37195718	+	Intron	INS	-	T	T													gtggtatgtattatagttgcINStttttttcctttaccccata							TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37195718	T	T	37195717	6	5	29	0	1	1	1	0	0	0	0	0	13123	812	28	0		0	RALGAPB	20	37195717	Intron	INS	-	TCGA-05-5420-01A-01D-1625-08	14130373	37195717	25829803	185	44136											
SLCO4A1	28231	broad.mit.edu	37	chr20	61300272	61300272	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgggtgctgagtgggcttCtctccgcagggggcatcccg	17	11	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61300272	T	T	61300272	1	4	29	0	1	0	0	0	0	0	0	0	14843	928	32	4		4	SLCO4A1	20	61300272	Intron	SNP	C	TCGA-05-5420-01A-01D-1625-08	24104555	61300272	1725248	186	44137											
KCNQ2	3785	broad.mit.edu	37	chr20	62062621	62062621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacggggctccaggggcttGcccggtcacagttccagaca	13	15	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62062621	T	T	62062621	1	4	29	0	1	0	0	0	0	0	0	0	8153	1334	46	3		3	KCNQ2	20	62062621	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	762349	62062621	962899	187	44138											
TMPRSS15	5651	broad.mit.edu	37	chr21	19653418	19653418	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgttgtcctttcttcgcctAttgtaatgagggtttatgac	9	8	1	2			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19653418	T	T	19653418	3	4	29	1	0	0	0	0	1	0	0	0	16369	446	16	5	468	5	TMPRSS15	21	19653418	Missense_Mutation	SNP	A	TCGA-05-5420-01A-01D-1625-08		19653418	28476477	188	44139											
APP	351	broad.mit.edu	37	chr21	27372545	27372545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttagcatgaaaaggcactGtctctctgttcatgtataca	7	8	3	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27372545	T	T	27372545	1	4	29	0	1	0	0	0	0	0	0	0	817	1392	48	3		3	APP	21	27372545	Intron	SNP	G	TCGA-05-5420-01A-01D-1625-08	7719127	27372545	20757350	189	44140											
SHOX	6473	broad.mit.edu	37	chrX	591835	591835	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcggcggccactgcccggTgcatttgttcaaggaccacg	15	13	1	0			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	591835	A	A	591835	3	1	29	1	0	0	0	0	1	0	0	0	14401	1696	59	5	205	5	SHOX	23	591835	Missense_Mutation	SNP	T	TCGA-05-5420-01A-01D-1625-08		591835	154678725	190	44141											
CXorf59	286464	broad.mit.edu	37	chrX	36103615	36103615	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accatgaaaaaagggtaattCaactccatttgcaacattcc	5	10	1	1			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36103615	A	A	36103615	3	1	29	1	0	0	0	0	1	0	0	0	4148	827	29	3	615	3	CXorf59	23	36103615	Missense_Mutation	SNP	C	TCGA-05-5420-01A-01D-1625-08	35511780	36103615	119166945	191	44142											
F8	2157	broad.mit.edu	37	chrX	154128189	154128189	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggcattgattgatccGgaataatgaagtctggccag	11	9	1	3			TCGA-05-5420-01A-01D-1625-08	TCGA-05-5420-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154128189	A	A	154128189	2	1	29	1	0	0	0	0	0	0	0	1	5393	1103	39	4		4	F8	23	154128189	Silent	SNP	G	TCGA-05-5420-01A-01D-1625-08	118024574	154128189	1142371	192	44143											
SDF4	51150	broad.mit.edu	37	chr1	1159282	1159282	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcctggaagtgctcggcCgtcttctccatgatccagcg	11	15	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1159282	A	A	1159282	2	1	30	1	0	0	0	0	0	0	0	1	14075	639	23	1		1	SDF4	1	1159282	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08		1159282	248091339	1	44144											
CHD5	26038	broad.mit.edu	37	chr1	6194240	6194240	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgcagtttcttcagcatcTtctgtagcagcatgagcttc	8	13	4	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6194240	A	A	6194240	3	1	30	1	0	0	0	0	1	0	0	0	3359	1609	56	5	2860	5	CHD5	1	6194240	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	5034958	6194240	243056381	2	44145											
CROCC	9696	broad.mit.edu	37	chr1	17280755	17280755	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctgagaagacggcgctgtCagagaagttgatgggtacac	15	7	2	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17280755	G	G	17280755	4	3	30	1	0	0	0	0	0	1	0	0	3925	838	29	4	3310	4	CROCC	1	17280755	Nonsense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	11086515	17280755	231969866	3	44146											
TMCO4	255104	broad.mit.edu	37	chr1	20082281	20082281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaaagacagaaacaacacCggaaaagaatcagtttaggt	9	7	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20082281	A	A	20082281	1	1	30	0	1	0	0	0	0	0	0	0	16121	667	23	1		1	TMCO4	1	20082281	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	2801526	20082281	229168340	4	44147											
ST3GAL3	6487	broad.mit.edu	37	chr1	44317282	44317283	+	Intron	INS	-	G	G													ctccaatccagccctctgccINSggtactctccttaatgatgt					rs3791079	by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44317283	G	G	44317282	6	5	30	0	1	1	1	0	0	0	0	0	15334	667	23	0		0	ST3GAL3	1	44317282	Intron	INS	-	TCGA-05-5423-01A-01D-1625-08	24235001	44317282	204933339	5	44148											
EPS15	2060	broad.mit.edu	37	chr1	51829698	51829698	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaaaaggatcttcattgttGacctttgtttaaaaagaaat	7	5	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51829698	C	C	51829698	2	2	30	1	0	0	0	0	0	0	0	1	5234	1277	45	4		4	EPS15	1	51829698	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	7512416	51829698	197420923	6	44149											
SGIP1	84251	broad.mit.edu	37	chr1	67147734	67147734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgactccaagggaaaaaGtggtgtccccaccagctaca	10	11	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67147734	T	T	67147734	3	4	30	1	0	0	0	0	1	0	0	0	14319	1029	36	3	1055	3	SGIP1	1	67147734	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	15318036	67147734	182102887	7	44150											
DDAH1	23576	broad.mit.edu	37	chr1	85816294	85816294	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaaaacctccctgaaatAcacctacttcttgaaggctg	5	11	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85816294	G	G	85816294	1	3	30	0	1	0	0	0	0	0	0	0	4354	406	14	5		5	DDAH1	1	85816294	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	18668560	85816294	163434327	8	44151											
DPYD	1806	broad.mit.edu	37	chr1	97771938	97771938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaacagcaaagctggagaCgtgcaagacaaatccaactt	8	10	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97771938	A	A	97771938	1	1	30	0	1	0	0	0	0	0	0	0	4785	551	19	3		3	DPYD	1	97771938	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	11955644	97771938	151478683	9	44152											
DPYD	1806	broad.mit.edu	37	chr1	97839179	97839179	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggacatgataaatttaactCcagggcatctgctccagaat	8	9	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97839179	A	A	97839179	4	1	30	1	0	0	0	0	0	1	0	0	4785	864	30	3	1113	3	DPYD	1	97839179	Nonsense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	67241	97839179	151411442	10	44153											
VAV3	10451	broad.mit.edu	37	chr1	108315324	108315324	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctttcctaataaaatattCagagtaactttaaaaacaag	4	7	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108315324	A	A	108315324	1	1	30	0	1	0	0	0	0	0	0	0	17260	841	29	3		3	VAV3	1	108315324	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	10476145	108315324	140935297	11	44154											
SLC6A17	388662	broad.mit.edu	37	chr1	110740266	110740266	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggacatttgcatcttctcAggccttgaatgcaaccactg	9	11	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110740266	T	T	110740266	1	4	30	0	1	0	0	0	0	0	0	0	14794	203	7	5		5	SLC6A17	1	110740266	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	2424942	110740266	138510355	12	44155											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	112999135	112999135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctgcctggtcctgccactCctgcttactcatatgcaaaa	8	14	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112999135	A	A	112999135	3	1	30	1	0	0	0	0	1	0	0	0	4080	855	30	3	1035	3	CTTNBP2NL	1	112999135	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	2258869	112999135	136251486	13	44156											
CSDE1	7812	broad.mit.edu	37	chr1	115273024	115273024	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatcctaatagcatgatttCtttgagcagagagcatatcc	7	8	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115273024	A	A	115273024	3	1	30	1	0	0	0	0	1	0	0	0	3963	913	32	3	1221	3	CSDE1	1	115273024	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	2273889	115273024	133977597	14	44157											
OTUD7B	56957	broad.mit.edu	37	chr1	149931584	149931584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcaggtttcctcctccCctacttagccatacttaccc	4	17	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149931584	A	A	149931584	1	1	30	0	1	0	0	0	0	0	0	0	11413	638	22	2		2	OTUD7B	1	149931584	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	34658560	149931584	99319037	15	44158											
MRPS21	54460	broad.mit.edu	37	chr1	150266784	150266784	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaggtttaaatccaagGtcatggcaaaacatctgaag	10	6	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150266784	T	T	150266784	1	4	30	0	1	0	0	0	0	0	0	0	9926	1276	44	3		3	MRPS21	1	150266784	5'UTR	SNP	G	TCGA-05-5423-01A-01D-1625-08	335200	150266784	98983837	16	44159											
TCHHL1	126637	broad.mit.edu	37	chr1	152059800	152059800	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagttcccactgtccactGaccatctccggtggttgcct	9	14	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152059800	A	A	152059800	4	1	30	1	0	0	0	0	0	1	0	0	15823	1299	45	4	2360	4	TCHHL1	1	152059800	Nonsense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	1793016	152059800	97190821	17	44160											
SMG5	23381	broad.mit.edu	37	chr1	156222815	156222815	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggacgaggtagggagacaTggctgactgggccttgggct	19	7	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156222815	A	A	156222815	3	1	30	1	0	0	0	0	1	0	0	0	14910	1464	51	5	513	5	SMG5	1	156222815	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	4163015	156222815	93027806	18	44161											
VHLL	391104	broad.mit.edu	37	chr1	156268936	156268936	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgcctcctgggtgccCgcctgggcctctaaacccac	12	18	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156268936	A	A	156268936	2	1	30	1	0	0	0	0	0	0	0	1	17290	639	23	1		1	VHLL	1	156268936	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	46121	156268936	92981685	19	44162											
FCRL5	83416	broad.mit.edu	37	chr1	157514257	157514257	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctctctagagagagctgGgtctcacaggtcagggtcac	13	11	4	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157514257	T	T	157514257	2	4	30	1	0	0	0	0	0	0	0	1	5855	1219	43	2		2	FCRL5	1	157514257	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	1245321	157514257	91736364	20	44163											
OR10J3	441911	broad.mit.edu	37	chr1	159284274	159284274	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcacaggaagaagtacatgGgggtgtgaagatgatggtcc	16	5	0	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159284274	C	C	159284274	3	2	30	1	0	0	0	0	1	0	0	0	11005	1232	43	4	815	4	OR10J3	1	159284274	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	1770017	159284274	89966347	21	44164											
CD244	51744	broad.mit.edu	37	chr1	160802416	160802416	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcgagataagtgctctccCactcctaagtgatgtgagag	10	10	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160802416	A	A	160802416	1	1	30	0	1	0	0	0	0	0	0	0	3017	609	21	2		2	CD244	1	160802416	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1518142	160802416	88448205	22	44165											
SH2D1B	117157	broad.mit.edu	37	chr1	162381856	162381856	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttggcctgaaattcacccCcaagtcaagggacagctctg	10	12	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162381856	T	T	162381856	1	4	30	0	1	0	0	0	0	0	0	0	14344	638	22	4		4	SH2D1B	1	162381856	5'UTR	SNP	C	TCGA-05-5423-01A-01D-1625-08	1579440	162381856	86868765	23	44166											
ADCY10	55811	broad.mit.edu	37	chr1	167798572	167798572	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccaggtgggcataatacTtgcagtgaaaaagataactg	11	7	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167798572	C	C	167798572	3	2	30	1	0	0	0	0	1	0	0	0	293	1609	56	5	1181	5	ADCY10	1	167798572	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	5416716	167798572	81452049	24	44167											
XCL2	6846	broad.mit.edu	37	chr1	168510283	168510283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgttggatttcctgtcCatgctcctgaccacgtctct	9	13	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168510283	A	A	168510283	3	1	30	1	0	0	0	0	1	0	0	0	17551	594	21	2	96	2	XCL2	1	168510283	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	711711	168510283	80740338	25	44168											
CACNA1E	777	broad.mit.edu	37	chr1	181706779	181706779	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accccgtcctgaccaactcgGagcgcaacaaagtgggtaca	10	14	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181706779	C	C	181706779	3	2	30	1	0	0	0	0	1	0	0	0	2568	1175	41	4	3631	4	CACNA1E	1	181706779	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	13196496	181706779	67543842	26	44169											
CDK18	5129	broad.mit.edu	37	chr1	205492489	205492489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccccagtcaccttcccCtccccgcccaccccctcccc	2	29	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205492489	A	A	205492489	1	1	30	0	1	0	0	0	0	0	0	0	3164	696	24	2		2	CDK18	1	205492489	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	23785710	205492489	43758132	27	44170											
USH2A	7399	broad.mit.edu	37	chr1	215932906	215932906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaggaagttaattaaaCaatttaacaactttcagtgg	8	4	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215932906	A	A	215932906	1	1	30	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	215932906	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	10440417	215932906	33317715	28	44171											
IARS2	55699	broad.mit.edu	37	chr1	220307776	220307776	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagatttgtacttggaaGgaaaagaccagctcgggggt	15	6	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220307776	T	T	220307776	4	4	30	1	0	0	0	0	0	1	0	0	7544	1001	35	2	1928	2	IARS2	1	220307776	Nonsense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	4374870	220307776	28942845	29	44172											
TP53BP2	7159	broad.mit.edu	37	chr1	223990466	223990466	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgctgtagagctgccttCttcttccacagccggtccct	8	14	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223990466	T	T	223990466	2	4	30	1	0	0	0	0	0	0	0	1	16508	912	32	4		4	TP53BP2	1	223990466	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	3682690	223990466	25260155	30	44173											
OBSCN	84033	broad.mit.edu	37	chr1	228528973	228528973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtctgcaggctctgggctGctgggcggggctccctgtcc	17	13	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228528973	T	T	228528973	1	4	30	0	1	0	0	0	0	0	0	0	10907	1334	46	3		3	OBSCN	1	228528973	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	4538507	228528973	20721648	31	44174											
URB2	9816	broad.mit.edu	37	chr1	229781606	229781606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttctctcttgccccagGctgttgtgtcagctgttaca	8	11	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229781606	T	T	229781606	3	4	30	1	0	0	0	0	1	0	0	0	17151	1217	42	3	3814	3	URB2	1	229781606	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	1252633	229781606	19469015	32	44175											
SIPA1L2	57568	broad.mit.edu	37	chr1	232650286	232650286	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctccccatcaggaggGcactgtccacataatctaat	7	13	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232650286	A	A	232650286	3	1	30	1	0	0	0	0	1	0	0	0	14443	1203	42	4	4452	4	SIPA1L2	1	232650286	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	2868680	232650286	16600335	33	44176											
PCNXL2	80003	broad.mit.edu	37	chr1	233152611	233152611	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagagatggacatgacaatGttctttatttattaaactta	6	4	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233152611	A	A	233152611	1	1	30	0	1	0	0	0	0	0	0	0	11686	1392	48	4		4	PCNXL2	1	233152611	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	502325	233152611	16098010	34	44177											
RYR2	6262	broad.mit.edu	37	chr1	237942120	237942120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgacaaactggagactGtaatcatcagcaaattaaac	6	7	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237942120	T	T	237942120	1	4	30	0	1	0	0	0	0	0	0	0	13880	1392	48	3		3	RYR2	1	237942120	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	4789509	237942120	11308501	35	44178											
RYR2	6262	broad.mit.edu	37	chr1	237961477	237961477	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccttatcagctgtgtaagtGttacttcggctctatcctac	7	11	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237961477	C	C	237961477	1	2	30	0	1	0	0	0	0	0	0	0	13880	1392	48	4		4	RYR2	1	237961477	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	19357	237961477	11289144	36	44179											
ZP4	57829	broad.mit.edu	37	chr1	238048740	238048740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagggggtcagtgctggGtgttgcccaacactgttgta	14	9	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048740	T	T	238048740	3	4	30	1	0	0	0	0	1	0	0	0	18347	1261	44	3	531	3	ZP4	1	238048740	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	87263	238048740	11201881	37	44180											
KIF26B	55083	broad.mit.edu	37	chr1	245861603	245861603	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcggcgacgagggggtgCcagcaaggtgaggcagcctc	19	11	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245861603	T	T	245861603	3	4	30	1	0	0	0	0	1	0	0	0	8365	739	26	4	6070	4	KIF26B	1	245861603	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	7812863	245861603	3389018	38	44181											
OR2L13	284521	broad.mit.edu	37	chr1	248154593	248154593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaatattattacatgcCcagtatgtcaaacggaaatt	7	6	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248154593	A	A	248154593	1	1	30	0	1	0	0	0	0	0	0	0	11100	638	22	2		2	OR2L13	1	248154593	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	2292990	248154593	1096028	39	44182											
OR2T12	127064	broad.mit.edu	37	chr1	248458842	248458842	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgtggttaaagagtccTaggagaataaaatctggggt	14	4	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248458842	C	C	248458842	2	2	30	1	0	0	0	0	0	0	0	1	11113	1509	53	5		5	OR2T12	1	248458842	Silent	SNP	T	TCGA-05-5423-01A-01D-1625-08	304249	248458842	791779	40	44183											
OR2T4	127074	broad.mit.edu	37	chr1	248525370	248525370	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccatctgccatcctctccGttaccctgtcctcatgaacc	6	18	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525370	A	A	248525370	3	1	30	1	0	0	0	0	1	0	0	0	11121	1145	40	4	490	4	OR2T4	1	248525370	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	66528	248525370	725251	41	44184											
OR2G6	391211	broad.mit.edu	37	chr1	248684959	248684959	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaaaaatggaggaaacCaacaacagctctgaaaaggg	12	7	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248684959	A	A	248684959	2	1	30	1	0	0	0	0	0	0	0	1	11094	581	21	2		2	OR2G6	1	248684959	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	159589	248684959	565662	42	44185											
OTOF	9381	broad.mit.edu	37	chr2	26703193	26703193	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagctctgtggggaggcaGttcaaagcgttcctgagctt	13	10	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26703193	A	A	26703193	1	1	30	0	1	0	0	0	0	0	0	0	11397	1044	36	4		4	OTOF	2	26703193	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08		26703193	216496180	43	44186											
C2orf16	84226	broad.mit.edu	37	chr2	27805334	27805334	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaatcaaacaactctcctCgggaccacacataaaaatcc	4	13	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27805334	A	A	27805334	2	1	30	1	0	0	0	0	0	0	0	1	2179	871	31	3		3	C2orf16	2	27805334	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	1102141	27805334	215394039	44	44187											
XDH	7498	broad.mit.edu	37	chr2	31587157	31587157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcataagtcccgtttccCccacctctctgtctccctct	3	18	4	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31587157	A	A	31587157	1	1	30	0	1	0	0	0	0	0	0	0	17553	638	22	2		2	XDH	2	31587157	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	3781823	31587157	211612216	45	44188											
BIRC6	57448	broad.mit.edu	37	chr2	32658718	32658719	+	Frame_Shift_Ins	INS	-	T	T													ccttatttgacagcaacagcINStgggatgaacatgtatttga							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32658719	T	T	32658718	7	5	30	1	0	1	1	0	0	0	0	0	1444	796	28	0	3305	0	BIRC6	2	32658718	Frame_Shift_Ins	INS	-	TCGA-05-5423-01A-01D-1625-08	1071561	32658718	210540655	46	44189											
ST6GAL2	84620	broad.mit.edu	37	chr2	107423368	107423368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgggatatattcatacacGtgcacctctctgcacatgga	9	10	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107423368	T	T	107423368	3	4	30	1	0	0	0	0	1	0	0	0	15340	1136	40	3	237	3	ST6GAL2	2	107423368	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	74764650	107423368	135776005	47	44190											
WDR33	55339	broad.mit.edu	37	chr2	128522623	128522623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgactaaaggcttacaagaGcatataactgactcgaggta	9	7	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128522623	T	T	128522623	1	4	30	0	1	0	0	0	0	0	0	0	17414	986	34	3		3	WDR33	2	128522623	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	21099255	128522623	114676750	48	44191											
CFC1B	653275	broad.mit.edu	37	chr2	131356184	131356184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgcagactgagatgacgcCccggattttgtgggcagcgc	14	12	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131356184	A	A	131356184	1	1	30	0	1	0	0	0	0	0	0	0	3310	638	22	2		2	CFC1B	2	131356184	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	2833561	131356184	111843189	49	44192											
LRP1B	53353	broad.mit.edu	37	chr2	141806812	141806812	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagaggaaagattacaaAcacaaacaactgatgctgct	8	9	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141806812	T	T	141806812	1	4	30	0	1	0	0	0	0	0	0	0	9042	58	2	5		5	LRP1B	2	141806812	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	10450628	141806812	101392561	50	44193											
TTC21B	79809	broad.mit.edu	37	chr2	166770238	166770238	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaaataaaaaataagctcCcttattttagttagccagta	4	6	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166770238	G	G	166770238	1	3	30	0	1	0	0	0	0	0	0	0	16814	638	22	4		4	TTC21B	2	166770238	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	24963426	166770238	76429135	51	44194											
COL5A2	1290	broad.mit.edu	37	chr2	189906364	189906364	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctggaggtccaattggcCcaagtggcccagggtttcct	12	13	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189906364	G	G	189906364	3	3	30	1	0	0	0	0	1	0	0	0	3729	623	22	4	938	4	COL5A2	2	189906364	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	23136126	189906364	53293009	52	44195											
HSPD1	3329	broad.mit.edu	37	chr2	198358878	198358878	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagttattgatttgttctTaccttttgatgtattaataa	5	4	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198358878	C	C	198358878	1	2	30	0	1	0	0	0	0	0	0	0	7498	1769	61	5		5	HSPD1	2	198358878	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	8452514	198358878	44840495	53	44196											
SPEG	10290	broad.mit.edu	37	chr2	220333524	220333524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcggcgatggggtgcaccCagagggcagggcccctcact	17	13	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220333524	T	T	220333524	1	4	30	0	1	0	0	0	0	0	0	0	15154	609	21	4		4	SPEG	2	220333524	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	21974646	220333524	22865849	54	44197											
GPR55	9290	broad.mit.edu	37	chr2	231774828	231774829	+	Missense_Mutation	DNP	CC	AA	AA													aaagtagtagcagaaaacatCcaggcagcagttgacgttgg							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	231774829	AA	AA	231774828	3	1	30	1	0	0	0	0	1	0	0	0	6764	855	30	3	113	3	GPR55	2	231774828	Missense_Mutation	DNP	CC	TCGA-05-5423-01A-01D-1625-08	11441304	231774828	11424545	55	44198											
MLPH	79083	broad.mit.edu	37	chr2	238462217	238462217	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtactttacagaaacctgtGgtggcccaccagtcctaacg	9	12	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238462217	T	T	238462217	2	4	30	1	0	0	0	0	0	0	0	1	9726	1335	47	2		2	MLPH	2	238462217	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	6687389	238462217	4737156	56	44199											
SRGAP3	9901	broad.mit.edu	37	chr3	9034680	9034680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccttgtcatccagcaatGgcccactgctggcctcgctg	11	15	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9034680	T	T	9034680	3	4	30	1	0	0	0	0	1	0	0	0	15265	1348	47	2	843	2	SRGAP3	3	9034680	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08		9034680	188987750	57	44200											
IRAK2	3656	broad.mit.edu	37	chr3	10268010	10268010	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatctgctgcctggctgtgtGcacgagcgtctgaaccatgc	12	12	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10268010	A	A	10268010	1	1	30	0	1	0	0	0	0	0	0	0	7893	1334	46	4		4	IRAK2	3	10268010	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	1233330	10268010	187754420	58	44201											
WDR48	57599	broad.mit.edu	37	chr3	39107161	39107161	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaagcatcacctatttggtGagattctactcagaattcag	9	8	4	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39107161	T	T	39107161	1	4	30	0	1	0	0	0	0	0	0	0	17428	1305	45	3		3	WDR48	3	39107161	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	28839151	39107161	158915269	59	44202											
CACNA1D	776	broad.mit.edu	37	chr3	53835504	53835504	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtgtctgcccgtgttgCgtctagtcccaaggagcaag	14	10	2	0	rs149645041	by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53835504	T	T	53835504	1	4	30	0	1	0	0	0	0	0	0	0	2567	783	27	4		4	CACNA1D	3	53835504	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	14728343	53835504	144186926	60	44203											
ROBO2	6092	broad.mit.edu	37	chr3	77626769	77626769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatccaagaatacaaggtaGgacccgggtgaagaaggaca	12	7	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77626769	T	T	77626769	1	4	30	0	1	0	0	0	0	0	0	0	13625	1015	35	2		2	ROBO2	3	77626769	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	23791265	77626769	120395661	61	44204											
DPPA2	151871	broad.mit.edu	37	chr3	109027774	109027774	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgccacagtgaagaaacccTgccttagaggtacaacacat	8	11	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109027774	A	A	109027774	1	1	30	0	1	0	0	0	0	0	0	0	4774	1595	55	5		5	DPPA2	3	109027774	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	31401005	109027774	88994656	62	44205											
TRPC1	7220	broad.mit.edu	37	chr3	142467344	142467344	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatagatgtgtgatatatAtcaacaatgttgatttttaa	6	2	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142467344	T	T	142467344	1	4	30	0	1	0	0	0	0	0	0	0	16703	464	16	5		5	TRPC1	3	142467344	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	33439570	142467344	55555086	63	44206											
PLSCR5	389158	broad.mit.edu	37	chr3	146311746	146311746	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccagcagctgttacatctCaagggcctgttcactgtaat	8	12	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146311746	T	T	146311746	2	4	30	1	0	0	0	0	0	0	0	1	12208	825	29	4		4	PLSCR5	3	146311746	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	3844402	146311746	51710684	64	44207											
ZBBX	79740	broad.mit.edu	37	chr3	167031671	167031671	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggtttttttggttttaAaatgaacagcataacaaagc	8	5	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167031671	C	C	167031671	1	2	30	0	1	0	0	0	0	0	0	0	17643	29	1	5		5	ZBBX	3	167031671	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	20719925	167031671	30990759	65	44208											
TNIK	23043	broad.mit.edu	37	chr3	170929013	170929013	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacatgttaatttcttgtttGatttcttcctcttcatcctg	4	9	4	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170929013	C	C	170929013	3	2	30	1	0	0	0	0	1	0	0	0	16436	1280	45	4	4004	4	TNIK	3	170929013	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	3897342	170929013	27093417	66	44209											
ZNF595	152687	broad.mit.edu	37	chr4	53561	53561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcacggcggctctggcccaGcctgcggccctccttgtgca	13	18	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53561	T	T	53561	1	4	30	0	1	0	0	0	0	0	0	0	18152	986	34	3		3	ZNF595	4	53561	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08		53561	191100715	67	44210											
NOP14	8602	broad.mit.edu	37	chr4	2958508	2958508	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caattcttcatcttcatttaGattgtagatgctttttttct	4	7	5	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2958508	C	C	2958508	3	2	30	1	0	0	0	0	1	0	0	0	10631	933	33	4	2276	4	NOP14	4	2958508	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	2904947	2958508	188195768	68	44211											
SLIT2	9353	broad.mit.edu	37	chr4	20618729	20618729	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccatggcacatgccagccCagcagccaggcaggcttcac	11	17	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20618729	T	T	20618729	2	4	30	1	0	0	0	0	0	0	0	1	14854	581	21	4		4	SLIT2	4	20618729	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	17660221	20618729	170535547	69	44212											
GUF1	60558	broad.mit.edu	37	chr4	44693849	44693849	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaacctaagatgcctgaCcaacttttttgaaatattga	7	7	0	5			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44693849	T	T	44693849	1	4	30	0	1	0	0	0	0	0	0	0	6964	522	18	4		4	GUF1	4	44693849	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	24075120	44693849	146460427	70	44213											
LRRC66	339977	broad.mit.edu	37	chr4	52861716	52861716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccccggtgttgtccccgCactgtcctgggctctgcgaa	12	16	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52861716	A	A	52861716	3	1	30	1	0	0	0	0	1	0	0	0	9105	710	25	3	1174	3	LRRC66	4	52861716	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	8167867	52861716	138292560	71	44214											
LPHN3	23284	broad.mit.edu	37	chr4	62845485	62845485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggatcaaccgaactgacCaaccagtaagcaacctacat	7	12	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62845485	A	A	62845485	3	1	30	1	0	0	0	0	1	0	0	0	9004	595	21	2	2864	2	LPHN3	4	62845485	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	9983769	62845485	128308791	72	44215											
UBA6	55236	broad.mit.edu	37	chr4	68490853	68490853	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgatgaaatctatgtgTccattatgatcatcatcttt	7	7	4	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68490853	A	A	68490853	2	1	30	1	0	0	0	0	0	0	0	1	16958	1654	58	5		5	UBA6	4	68490853	Silent	SNP	T	TCGA-05-5423-01A-01D-1625-08	5645368	68490853	122663423	73	44216											
NPFFR2	10886	broad.mit.edu	37	chr4	73012574	73012574	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttctactacaaatggtaaCtttctatatttttgaggaga	6	6	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73012574	G	G	73012574	1	3	30	0	1	0	0	0	0	0	0	0	10673	580	20	4		4	NPFFR2	4	73012574	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	4521721	73012574	118141702	74	44217											
ANKRD56	345079	broad.mit.edu	37	chr4	77817883	77817883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaatgaagggttccccgCccaggattcccaggactcat	10	13	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77817883	A	A	77817883	3	1	30	1	0	0	0	0	1	0	0	0	682	739	26	3	1265	3	ANKRD56	4	77817883	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	4805309	77817883	113336393	75	44218											
C4orf22	255119	broad.mit.edu	37	chr4	81884833	81884833	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccgtagacagagcaaattaGaataataaatgagccctgta	8	7	0	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81884833	A	A	81884833	1	1	30	0	1	0	0	0	0	0	0	0	2278	957	33	4		4	C4orf22	4	81884833	3'UTR	SNP	G	TCGA-05-5423-01A-01D-1625-08	4066950	81884833	109269443	76	44219											
SMARCAD1	56916	broad.mit.edu	37	chr4	95162158	95162158	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagacaagactggatcatGtaagtttacatttgaattac	7	5	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95162158	T	T	95162158	5	4	30	1	0	0	0	0	0	0	1	0	14886	1391	48	3	724	3	SMARCAD1	4	95162158	Splice_Site	SNP	G	TCGA-05-5423-01A-01D-1625-08	13277325	95162158	95992118	77	44220											
UNC5C	8633	broad.mit.edu	37	chr4	96256587	96256587	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcatctactctttcatctActatgtggtccttctgatga	5	10	6	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96256587	G	G	96256587	3	3	30	1	0	0	0	0	1	0	0	0	17119	391	14	5	2535	5	UNC5C	4	96256587	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	1094429	96256587	94897689	78	44221											
CENPE	1062	broad.mit.edu	37	chr4	104068414	104068414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagacattaaaaaaactgGtaacataattataatacaaa	4	4	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104068414	T	T	104068414	1	4	30	0	1	0	0	0	0	0	0	0	3260	1276	44	3		3	CENPE	4	104068414	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	7811827	104068414	87085862	79	44222											
RNF150	57484	broad.mit.edu	37	chr4	141832515	141832515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcggcattgggctgatgGggcagaaaaagatctgttct	14	7	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141832515	T	T	141832515	1	4	30	0	1	0	0	0	0	0	0	0	13562	1247	43	2		2	RNF150	4	141832515	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	37764101	141832515	49321761	80	44223											
NPY5R	4889	broad.mit.edu	37	chr4	164271827	164271827	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaactttaattttaatatcAattgccattgtcaggtatca	4	7	4	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164271827	T	T	164271827	2	4	30	1	0	0	0	0	0	0	0	1	10705	117	5	5		5	NPY5R	4	164271827	Silent	SNP	A	TCGA-05-5423-01A-01D-1625-08	22439312	164271827	26882449	81	44224											
MARCH1	55016	broad.mit.edu	37	chr4	165111143	165111143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacctgaagaaatcaaaaGgatggttaatgatgctgaga	11	5	1	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165111143	T	T	165111143	1	4	30	0	1	0	0	0	0	0	0	0	9390	1015	35	2		2	MARCH1	4	165111143	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	839316	165111143	26043133	82	44225											
FASTKD3	79072	broad.mit.edu	37	chr5	7866983	7866983	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaggcagaaatctgacgaGgtgaaaatttttctgtttgg	11	4	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7866983	C	C	7866983	3	2	30	1	0	0	0	0	1	0	0	0	5744	1000	35	4	798	4	FASTKD3	5	7866983	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08		7866983	173048277	83	44226											
TAS2R1	50834	broad.mit.edu	37	chr5	9629408	9629408	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaactttagagaagagagaAaaacttttatcatgcagtgg	10	4	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9629408	T	T	9629408	3	4	30	1	0	0	0	0	1	0	0	0	15684	14	1	5	166	5	TAS2R1	5	9629408	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	1762425	9629408	171285852	84	44227											
CTNND2	1501	broad.mit.edu	37	chr5	11236961	11236961	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaaggaaagaagcggggaGaatatgagagagaaatccta	13	4	0	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11236961	A	A	11236961	1	1	30	0	1	0	0	0	0	0	0	0	4054	957	33	4		4	CTNND2	5	11236961	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	1607553	11236961	169678299	85	44228											
CDH12	1010	broad.mit.edu	37	chr5	22654245	22654245	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgttccttctcccttccCcttcctttctttcttccttc	1	20	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22654245	T	T	22654245	1	4	30	0	1	0	0	0	0	0	0	0	3128	638	22	4		4	CDH12	5	22654245	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	11417284	22654245	158261015	86	44229											
CDH10	1008	broad.mit.edu	37	chr5	24535779	24535779	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaaggtcataaagatgatCaaatgaacaaacagcaattc	6	6	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24535779	T	T	24535779	1	4	30	0	1	0	0	0	0	0	0	0	3126	841	29	4		4	CDH10	5	24535779	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1881534	24535779	156379481	87	44230											
CDH9	1007	broad.mit.edu	37	chr5	26906151	26906151	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaggcctcccatctggCcacccatgtctttggcctgt	9	15	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26906151	T	T	26906151	3	4	30	1	0	0	0	0	1	0	0	0	3147	739	26	4	1673	4	CDH9	5	26906151	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	2370372	26906151	154009109	88	44231											
UGT3A1	133688	broad.mit.edu	37	chr5	35991432	35991432	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcctcagtactccaaagGcactggctgtgggcctagga	13	13	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35991432	T	T	35991432	1	4	30	0	1	0	0	0	0	0	0	0	17089	1218	42	3		3	UGT3A1	5	35991432	5'UTR	SNP	G	TCGA-05-5423-01A-01D-1625-08	9085281	35991432	144923828	89	44232											
DEPDC1B	55789	broad.mit.edu	37	chr5	59893544	59893544	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccattcactcaaaacaacaaCagtggtctctagcacctgtt	5	13	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59893544	G	G	59893544	1	3	30	0	1	0	0	0	0	0	0	0	4480	493	17	4		4	DEPDC1B	5	59893544	3'UTR	SNP	C	TCGA-05-5423-01A-01D-1625-08	23902112	59893544	121021716	90	44233											
DEPDC1B	55789	broad.mit.edu	37	chr5	59894849	59894849	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctattaaaataaaaaaaaaaAcataaaaacagtagggagga	6	3	0	0	rs58987696		TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59894849	C	C	59894849	1	2	30	0	1	0	0	0	0	0	0	0	4480	58	2	5		5	DEPDC1B	5	59894849	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	1305	59894849	121020411	91	44234											
SLC30A5	64924	broad.mit.edu	37	chr5	68410403	68410403	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctataaaggtacatttaaaaTaaattatcagctgggcccag	7	7	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68410403	C	C	68410403	1	2	30	0	1	0	0	0	0	0	0	0	14672	1421	49	5		5	SLC30A5	5	68410403	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	8515554	68410403	112504857	92	44235											
F2RL2	2151	broad.mit.edu	37	chr5	75913949	75913949	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtgaaaggatggacgaTggccaggtagcggttgatgc	18	5	0	2	rs141630366	byFrequency;by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75913949	C	C	75913949	3	2	30	1	0	0	0	0	1	0	0	0	5388	1464	51	5	545	5	F2RL2	5	75913949	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	7503546	75913949	105001311	93	44236											
AP3B1	8546	broad.mit.edu	37	chr5	77473153	77473153	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaaaaaatatatataaaatCatgacctacctattgctacg	4	7	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77473153	G	G	77473153	1	3	30	0	1	0	0	0	0	0	0	0	746	841	29	4		4	AP3B1	5	77473153	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1559204	77473153	103442107	94	44237											
GPR98	84059	broad.mit.edu	37	chr5	90151813	90151813	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacgtatgcaagatgcaaacAtaccgtaattcatcagcact	6	10	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90151813	G	G	90151813	1	3	30	0	1	0	0	0	0	0	0	0	6787	232	8	5		5	GPR98	5	90151813	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	12678660	90151813	90763447	95	44238											
SLCO6A1	133482	broad.mit.edu	37	chr5	101811510	101811510	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaatacctgtaaaataagCactgaaactgaacatcaaac	5	9	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101811510	T	T	101811510	1	4	30	0	1	0	0	0	0	0	0	0	14846	725	25	4		4	SLCO6A1	5	101811510	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	11659697	101811510	79103750	96	44239											
DMXL1	1657	broad.mit.edu	37	chr5	118484728	118484728	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagcctgcatctaatagtaGatcttcccaggactttgtga	9	10	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118484728	T	T	118484728	3	4	30	1	0	0	0	0	1	0	0	0	4634	942	33	3	3276	3	DMXL1	5	118484728	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	16673218	118484728	62430532	97	44240											
SEC24A	10802	broad.mit.edu	37	chr5	134056703	134056703	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctaggtactgatgctttggGttggaaaaaattgtacacag	11	6	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134056703	C	C	134056703	3	2	30	1	0	0	0	0	1	0	0	0	14107	1261	44	4	3068	4	SEC24A	5	134056703	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	15571975	134056703	46858557	98	44241											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139907856	139907856	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactggaagacttgattccTaaaaatcatatcagaacacc	6	9	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139907856	A	A	139907856	2	1	30	1	0	0	0	0	0	0	0	1	629	1509	53	5		5	ANKHD1-EIF4EBP3	5	139907856	Silent	SNP	T	TCGA-05-5423-01A-01D-1625-08	5851153	139907856	41007404	99	44242											
PCDHGA3	56112	broad.mit.edu	37	chr5	140724004	140724004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgctcctaatttcccaaCagaggaattggaaataaaaa	6	7	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140724004	A	A	140724004	3	1	30	1	0	0	0	0	1	0	0	0	11649	478	17	3	406	3	PCDHGA3	5	140724004	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	816148	140724004	40191256	100	44243											
PCDHGA6	56109	broad.mit.edu	37	chr5	140753772	140753772	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcccgaggagctggagaAaggctccttcgtaggcaaca	12	10	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140753772	T	T	140753772	3	4	30	1	0	0	0	0	1	0	0	0	11652	14	1	5	124	5	PCDHGA6	5	140753772	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	29768	140753772	40161488	101	44244											
PCDHGA8	9708	broad.mit.edu	37	chr5	140772574	140772574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcgaagcacggagtccGtatcgtctccagaggtagga	15	10	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140772574	T	T	140772574	3	4	30	1	0	0	0	0	1	0	0	0	11654	1145	40	3	196	3	PCDHGA8	5	140772574	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	18802	140772574	40142686	102	44245											
EBF1	1879	broad.mit.edu	37	chr5	158522580	158522580	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actagcttcttgactgccctGaattttgtgacatagagccc	8	11	1	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158522580	A	A	158522580	1	1	30	0	1	0	0	0	0	0	0	0	4920	1305	45	4		4	EBF1	5	158522580	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	17750006	158522580	22392680	103	44246											
ATP10B	23120	broad.mit.edu	37	chr5	160034041	160034041	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctggcttctgtagttcaCgaaattgctttagctcttcc	9	10	4	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160034041	T	T	160034041	3	4	30	1	0	0	0	0	1	0	0	0	1121	536	19	4	1526	4	ATP10B	5	160034041	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	1511461	160034041	20881219	104	44247											
HMMR	3161	broad.mit.edu	37	chr5	162894791	162894791	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttagtgaaaagtacacatGatagaaagagagttacacag	9	5	0	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162894791	A	A	162894791	1	1	30	0	1	0	0	0	0	0	0	0	7309	1305	45	4		4	HMMR	5	162894791	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	2860750	162894791	18020469	105	44248											
DOCK2	1794	broad.mit.edu	37	chr5	169446218	169446218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcattgagaggctcggCggcaggatagggacatttat	14	7	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169446218	A	A	169446218	1	1	30	0	1	0	0	0	0	0	0	0	4727	783	27	3		3	DOCK2	5	169446218	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	6551427	169446218	11469042	106	44249											
KCNMB1	3779	broad.mit.edu	37	chr5	169810738	169810738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcacagcccacctgccgGcagctgacacgttgacccac	9	18	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169810738	T	T	169810738	3	4	30	1	0	0	0	0	1	0	0	0	8144	1203	42	3	332	3	KCNMB1	5	169810738	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	364520	169810738	11104522	107	44250											
GABRP	2568	broad.mit.edu	37	chr5	170235745	170235745	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcgattcagtccctgcaaGaacctgcattggtaagcagc	9	12	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170235745	T	T	170235745	3	4	30	1	0	0	0	0	1	0	0	0	6234	942	33	3	847	3	GABRP	5	170235745	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	425007	170235745	10679515	108	44251											
RANBP17	64901	broad.mit.edu	37	chr5	170336613	170336613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttagtaaattttGgtttgctttttcataggtct	6	3	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170336613	T	T	170336613	1	4	30	0	1	0	0	0	0	0	0	0	13135	1363	47	2		2	RANBP17	5	170336613	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	100868	170336613	10578647	109	44252											
C5orf41	153222	broad.mit.edu	37	chr5	172550026	172550026	+	Intron	DEL	A	-	-													ttatctgttattacataattAaaaggaaagtctttcatggt							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	172550026	-	-	172550026	6	5	30	0	1	1	0	1	0	0	0	0	2323	377	13	0		0	C5orf41	5	172550026	Intron	DEL	A	TCGA-05-5423-01A-01D-1625-08	2213413	172550026	8365234	110	44253											
GRM6	2916	broad.mit.edu	37	chr5	178418906	178418906	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacgaaggcctcaaccccaCtttcgccatagttgccctcg	8	16	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178418906	G	G	178418906	3	3	30	1	0	0	0	0	1	0	0	0	6867	565	20	4	1986	4	GRM6	5	178418906	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	5868880	178418906	2496354	111	44254											
FLT4	2324	broad.mit.edu	37	chr5	180057435	180057435	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcctgaaccagccaccCgctggagcaggtagggcccc	13	16	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180057435	T	T	180057435	1	4	30	0	1	0	0	0	0	0	0	0	6002	667	23	4		4	FLT4	5	180057435	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1638529	180057435	857825	112	44255											
CPNE5	57699	broad.mit.edu	37	chr6	36712974	36712974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtctgcgggacctctggGcatgttcccccctaaacaag	10	14	3	0	rs148086429	by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36712974	T	T	36712974	1	4	30	0	1	0	0	0	0	0	0	0	3847	1218	42	3		3	CPNE5	6	36712974	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08		36712974	134402093	113	44256											
CYB5R4	51167	broad.mit.edu	37	chr6	84603269	84603269	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataatgtcagcccttatatGgagtatcatcctggtggaga	10	7	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84603269	T	T	84603269	3	4	30	1	0	0	0	0	1	0	0	0	4162	1348	47	2	268	2	CYB5R4	6	84603269	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	47890295	84603269	86511798	114	44257											
PTPRK	5796	broad.mit.edu	37	chr6	128319937	128319937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcagtaaatcagctacCctgatggctggatgcagctg	12	10	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128319937	A	A	128319937	3	1	30	1	0	0	0	0	1	0	0	0	12913	622	22	2	1797	2	PTPRK	6	128319937	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	43716668	128319937	42795130	115	44258											
PDE10A	10846	broad.mit.edu	37	chr6	165752648	165752648	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattaatcaccagatctgccTggaataacccattcccttaa	4	12	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165752648	C	C	165752648	1	2	30	0	1	0	0	0	0	0	0	0	11724	1595	55	5		5	PDE10A	6	165752648	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	37432711	165752648	5362419	116	44259											
PDE10A	10846	broad.mit.edu	37	chr6	165806181	165806181	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttctgaagtatggcatacAtgcagtgtgctacagtgacc	11	8	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165806181	T	T	165806181	3	4	30	1	0	0	0	0	1	0	0	0	11724	217	8	5	787	5	PDE10A	6	165806181	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	53533	165806181	5308886	117	44260											
RADIL	55698	broad.mit.edu	37	chr7	4845039	4845040	+	Intron	DEL	GC	-	-													caggttggggatggggcgggGcgggggggtcctctgggtgg					rs148730991	by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4845040	-	-	4845039	6	5	30	0	1	1	0	1	0	0	0	0	13105	1218	42	0		0	RADIL	7	4845039	Intron	DEL	GC	TCGA-05-5423-01A-01D-1625-08		4845039	154293624	118	44261											
MMD2	221938	broad.mit.edu	37	chr7	4949568	4949568	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacgacgtagcagagaagctCcacaagcttgtacctggcag	11	11	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4949568	T	T	4949568	3	4	30	1	0	0	0	0	1	0	0	0	9737	864	30	4	267	4	MMD2	7	4949568	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	104529	4949568	154189095	119	44262											
DGKB	1607	broad.mit.edu	37	chr7	14722303	14722303	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtgcatgacctagaacaGaatgacaacattgtgataag	10	6	0	5			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14722303	T	T	14722303	1	4	30	0	1	0	0	0	0	0	0	0	4506	957	33	3		3	DGKB	7	14722303	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	9772735	14722303	144416360	120	44263											
HDAC9	9734	broad.mit.edu	37	chr7	18625111	18625111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcatgagaacttgacacGgcagcaccaggctcagcttc	10	13	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18625111	T	T	18625111	3	4	30	1	0	0	0	0	1	0	0	0	7081	1116	39	1	236	1	HDAC9	7	18625111	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	3902808	18625111	140513552	121	44264											
HDAC9	9734	broad.mit.edu	37	chr7	19015621	19015621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccgggtcagtcatatccaGgctcatcgttgatatttgtg	10	9	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19015621	T	T	19015621	1	4	30	0	1	0	0	0	0	0	0	0	7081	1015	35	2		2	HDAC9	7	19015621	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	390510	19015621	140123042	122	44265											
TRIL	9865	broad.mit.edu	37	chr7	28997377	28997377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttggggtgcagagagcGgatctggttgtactgcaggt	18	6	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28997377	T	T	28997377	3	4	30	1	0	0	0	0	1	0	0	0	16609	1116	39	1	2153	1	TRIL	7	28997377	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	9981756	28997377	130141286	123	44266											
C7orf25	79020	broad.mit.edu	37	chr7	42949192	42949192	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggaagacccagcctttgGtataaataacttacttccac	7	10	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42949192	A	A	42949192	1	1	30	0	1	0	0	0	0	0	0	0	2405	1276	44	4		4	C7orf25	7	42949192	3'UTR	SNP	G	TCGA-05-5423-01A-01D-1625-08	13951815	42949192	116189471	124	44267											
TNS3	64759	broad.mit.edu	37	chr7	47342543	47342543	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaccagctggaaacacaCctacctggcagaggtgaggc	11	13	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47342543	T	T	47342543	1	4	30	0	1	0	0	0	0	0	0	0	16467	522	18	4		4	TNS3	7	47342543	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	4393351	47342543	111796120	125	44268											
PKD1L1	168507	broad.mit.edu	37	chr7	47976473	47976473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttatcacaatccagaggcGcctgtgttttttcattaaca	7	9	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47976473	T	T	47976473	3	4	30	1	0	0	0	0	1	0	0	0	12059	1087	38	3	8397	3	PKD1L1	7	47976473	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	633930	47976473	111162190	126	44269											
EGFR	1956	broad.mit.edu	37	chr7	55259441	55259441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttggaggaccgtcgcttGgtgcaccgcgacctggcagc	14	13	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55259441	T	T	55259441	3	4	30	1	0	0	0	0	1	0	0	0	5007	1339	47	2	2845	2	EGFR	7	55259441	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	7282968	55259441	103879222	127	44270											
EGFR	1956	broad.mit.edu	37	chr7	55259524	55259524	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agattttgggctggccaaacTgctgggtgcggaagagaaag	16	6	0	2	rs121913444		TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55259524	A	A	55259524	3	1	30	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2928	5	EGFR	7	55259524	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	83	55259524	103879139	128	44271											
AUTS2	26053	broad.mit.edu	37	chr7	69364318	69364318	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtgtggagaaacgccagaCgcccctgaccaagaagaaac	11	12	0	5			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69364318	T	T	69364318	3	4	30	1	0	0	0	0	1	0	0	0	1230	536	19	4	362	4	AUTS2	7	69364318	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	14104794	69364318	89774345	129	44272											
PCLO	27445	broad.mit.edu	37	chr7	82579138	82579138	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgttgggcgtttcttgTctttgggtggagatgtggca	17	4	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82579138	A	A	82579138	3	1	30	1	0	0	0	0	1	0	0	0	11677	1667	58	5	4759	5	PCLO	7	82579138	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	13214820	82579138	76559525	130	44273											
LAMB4	22798	broad.mit.edu	37	chr7	107698402	107698402	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagtcatgggtgaggaattGacaagttttatggtctaaaa	11	4	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107698402	A	A	107698402	1	1	30	0	1	0	0	0	0	0	0	0	8685	1305	45	4		4	LAMB4	7	107698402	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	25119264	107698402	51440261	131	44274											
LAMB4	22798	broad.mit.edu	37	chr7	107710286	107710286	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactcatctaagtcctgcttGctgcagaaattctccaatga	6	11	3	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107710286	C	C	107710286	3	2	30	1	0	0	0	0	1	0	0	0	8685	1310	46	4	3184	4	LAMB4	7	107710286	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	11884	107710286	51428377	132	44275											
C7orf58	79974	broad.mit.edu	37	chr7	120906726	120906726	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgtttaccttctgttttaGggcaacatgtgttgtttttc	8	6	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120906726	C	C	120906726	1	2	30	0	1	0	0	0	0	0	0	0	2430	1015	35	4		4	C7orf58	7	120906726	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	13196440	120906726	38231937	133	44276											
PAX4	5078	broad.mit.edu	37	chr7	127255388	127255388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaacagccccaggctcttGccttcagaggagccctttct	9	15	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127255388	T	T	127255388	1	4	30	0	1	0	0	0	0	0	0	0	11575	1334	46	3		3	PAX4	7	127255388	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	6348662	127255388	31883275	134	44277											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138765055	138765055	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttaatgtgactgagttccTaccacccttcctcctcttca	5	14	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138765055	C	C	138765055	1	2	30	0	1	0	0	0	0	0	0	0	17701	1537	53	5		5	ZC3HAV1	7	138765055	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	11509667	138765055	20373608	135	44278											
MGAM	8972	broad.mit.edu	37	chr7	141778185	141778185	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggagtggagcataaagaTaagggatgaagaaaaaatag	14	1	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141778185	C	C	141778185	1	2	30	0	1	0	0	0	0	0	0	0	9634	1421	49	5		5	MGAM	7	141778185	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	3013130	141778185	17360478	136	44279											
TRYX3	136541	broad.mit.edu	37	chr7	141952238	141952238	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaaaagcagattatctttCtggcaagacagaaggaagaa	9	6	2	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141952238	T	T	141952238	1	4	30	0	1	0	0	0	0	0	0	0	16729	928	32	4		4	TRYX3	7	141952238	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	174053	141952238	17186425	137	44280											
KEL	3792	broad.mit.edu	37	chr7	142649603	142649603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctcctcaccatgggtGgttgctctgtcagttcccgc	9	16	4	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142649603	T	T	142649603	3	4	30	1	0	0	0	0	1	0	0	0	8212	1348	47	2	1042	2	KEL	7	142649603	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	697365	142649603	16489060	138	44281											
CASP2	835	broad.mit.edu	37	chr7	143001797	143001797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcggaacaccaaacgagGttcctggtacatcgaggctc	11	12	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143001797	T	T	143001797	3	4	30	1	0	0	0	0	1	0	0	0	2697	1261	44	3	1186	3	CASP2	7	143001797	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	352194	143001797	16136866	139	44282											
OR2A14	135941	broad.mit.edu	37	chr7	143826473	143826473	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttatgaaccaggaaagcAccatctccttttttccatgc	5	12	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143826473	G	G	143826473	3	3	30	1	0	0	0	0	1	0	0	0	11070	159	6	5	270	5	OR2A14	7	143826473	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	824676	143826473	15312190	140	44283											
SSPO	23145	broad.mit.edu	37	chr7	149482801	149482801	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagcgctggccgtgcgtctgGagggcactgttgtgcacatg	16	10	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149482801	C	C	149482801	3	2	30	1	0	0	0	0	1	0	0	0	15307	1175	41	4	3299	4	SSPO	7	149482801	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	5656328	149482801	9655862	141	44284											
ABCB8	11194	broad.mit.edu	37	chr7	150739111	150739111	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgggaagctggaagcttccGatgaagaggtgtacacagcc	14	8	0	2	rs144722322	byFrequency	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150739111	A	A	150739111	3	1	30	1	0	0	0	0	1	0	0	0	47	1058	37	4	1735	4	ABCB8	7	150739111	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	1256310	150739111	8399552	142	44285											
CSMD1	64478	broad.mit.edu	37	chr8	4646078	4646078	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtatttccttgaagcaggCtgacaagaaaatcagagaat	9	6	1	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4646078	G	G	4646078	1	3	30	0	1	0	0	0	0	0	0	0	3978	812	28	4		4	CSMD1	8	4646078	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08		4646078	141717944	143	44286											
PDGFRL	5157	broad.mit.edu	37	chr8	17434764	17434764	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtccgaggttcccgagatGaaggtctggctgctgcttgg	16	9	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17434764	C	C	17434764	3	2	30	1	0	0	0	0	1	0	0	0	11757	1290	45	4	5	4	PDGFRL	8	17434764	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	12788686	17434764	128929258	144	44287											
MTUS1	57509	broad.mit.edu	37	chr8	17573559	17573560	+	Intron	INS	-	A	A													attgggaatacaacatggatINSaacaggtagcttgtgtctca							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17573560	A	A	17573559	6	5	30	0	1	1	1	0	0	0	0	0	10059	1421	49	0		0	MTUS1	8	17573559	Intron	INS	-	TCGA-05-5423-01A-01D-1625-08	138795	17573559	128790463	145	44288											
SLC25A37	51312	broad.mit.edu	37	chr8	23429084	23429084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctcaggcgggctggccGgggccctcgccgcggccgcc	16	18	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23429084	T	T	23429084	3	4	30	1	0	0	0	0	1	0	0	0	14615	1116	39	1	747	1	SLC25A37	8	23429084	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	5855525	23429084	122934938	146	44289											
NEFM	4741	broad.mit.edu	37	chr8	24775338	24775338	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggcaagtctcctgtgcCgaaatcaccagtggaagaga	12	9	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24775338	T	T	24775338	3	4	30	1	0	0	0	0	1	0	0	0	10411	652	23	4	1980	4	NEFM	8	24775338	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	1346254	24775338	121588684	147	44290											
PRKDC	5591	broad.mit.edu	37	chr8	48711844	48711844	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgtaagcatcaatcacCccagctgcaggcccacagct	8	15	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48711844	G	G	48711844	2	3	30	1	0	0	0	0	0	0	0	1	12627	610	22	4		4	PRKDC	8	48711844	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	23936506	48711844	97652178	148	44291											
STAU2	27067	broad.mit.edu	37	chr8	74585457	74585458	+	Nonsense_Mutation	DNP	CC	AA	AA													catagcaagcccattcagttCcacagttggagttatactgc							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74585458	AA	AA	74585457	4	1	30	1	0	0	0	0	0	1	0	0	15391	864	30	3	1581	3	STAU2	8	74585457	Nonsense_Mutation	DNP	CC	TCGA-05-5423-01A-01D-1625-08	25873613	74585457	71778565	149	44292											
ZFHX4	79776	broad.mit.edu	37	chr8	77690783	77690783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaactctccaactcgagCctgtcccccagtgtaaaaca	5	16	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77690783	A	A	77690783	1	1	30	0	1	0	0	0	0	0	0	0	17761	754	26	3		3	ZFHX4	8	77690783	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	3105326	77690783	68673239	150	44293											
UBR5	51366	broad.mit.edu	37	chr8	103300576	103300576	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactatagagaatttgaaatCatatatcaagcagttttgaa	6	4	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103300576	T	T	103300576	1	4	30	0	1	0	0	0	0	0	0	0	17031	841	29	4		4	UBR5	8	103300576	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	25609793	103300576	43063446	151	44294											
FAM91A1	157769	broad.mit.edu	37	chr8	124824817	124824817	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttcaagtttgctttcacAgtcatcgtgtgctgacatgg	9	8	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124824817	G	G	124824817	3	3	30	1	0	0	0	0	1	0	0	0	5708	188	7	5	2484	5	FAM91A1	8	124824817	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	21524241	124824817	21539205	152	44295											
EIF2C2	27161	broad.mit.edu	37	chr8	141554538	141554538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaatccttatcttttaacCggaatactaaaaaccctgca	4	10	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141554538	A	A	141554538	1	1	30	0	1	0	0	0	0	0	0	0	5046	667	23	1		1	EIF2C2	8	141554538	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	16729721	141554538	4809484	153	44296											
BAI1	575	broad.mit.edu	37	chr8	143560728	143560728	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtcatggggcagttgcagcGtcacgtgtggggctggcagc	18	10	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143560728	C	C	143560728	3	2	30	1	0	0	0	0	1	0	0	0	1303	1145	40	4	1632	4	BAI1	8	143560728	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	2006190	143560728	2803294	154	44297											
EEF1D	1936	broad.mit.edu	37	chr8	144663351	144663351	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggcaaggggagcacggttaGatggcaggggccagggacag	21	7	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144663351	C	C	144663351	1	2	30	0	1	0	0	0	0	0	0	0	4966	957	33	4		4	EEF1D	8	144663351	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	1102623	144663351	1700671	155	44298											
FREM1	158326	broad.mit.edu	37	chr9	14748655	14748655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctggaggcatgcaagatGgcaggcggtcagttcatttt	14	8	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14748655	T	T	14748655	1	4	30	0	1	0	0	0	0	0	0	0	6104	1363	47	2		2	FREM1	9	14748655	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08		14748655	126464776	156	44299											
TLN1	7094	broad.mit.edu	37	chr9	35712916	35712916	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaggctgctggccttgtcCagcacatcactggccgtatc	11	13	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35712916	G	G	35712916	2	3	30	1	0	0	0	0	0	0	0	1	16070	581	21	4		4	TLN1	9	35712916	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	20964261	35712916	105500515	157	44300											
TMC1	117531	broad.mit.edu	37	chr9	75445650	75445650	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatttttctttttctttttCtttctttttttttttttttt	0	4	4	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75445650	T	T	75445650	1	4	30	0	1	0	0	0	0	0	0	0	16107	928	32	4		4	TMC1	9	75445650	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	39732734	75445650	65767781	158	44301											
TLE1	7088	broad.mit.edu	37	chr9	84228380	84228380	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgcccggcgttggcatGtcgctccgaggcgttggtgt	17	11	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84228380	A	A	84228380	2	1	30	1	0	0	0	0	0	0	0	1	16061	1368	48	4		4	TLE1	9	84228380	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	8782730	84228380	56985051	159	44302											
TMOD1	7111	broad.mit.edu	37	chr9	100353718	100353718	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaacaacaatgaccttgGtgagtagaaatatgcttcct	9	7	0	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100353718	T	T	100353718	5	4	30	1	0	0	0	0	0	0	1	0	16356	1275	44	3	1046	3	TMOD1	9	100353718	Splice_Site	SNP	G	TCGA-05-5423-01A-01D-1625-08	16125338	100353718	40859713	160	44303											
COL15A1	1306	broad.mit.edu	37	chr9	101798476	101798476	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaggagagaaaggagacCggggacccaaggtgaggtca	16	7	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101798476	T	T	101798476	3	4	30	1	0	0	0	0	1	0	0	0	3704	643	23	4	2392	4	COL15A1	9	101798476	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	1444758	101798476	39414955	161	44304											
ASTN2	23245	broad.mit.edu	37	chr9	119583074	119583074	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcagggcactgctcagagaGagggcaacagggtagttatg	15	8	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119583074	C	C	119583074	1	2	30	0	1	0	0	0	0	0	0	0	1069	957	33	4		4	ASTN2	9	119583074	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	17784598	119583074	21630357	162	44305											
ASTN2	23245	broad.mit.edu	37	chr9	119738473	119738473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagggccaaggtctatgGgaagaaggagaggggagaga	20	3	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119738473	T	T	119738473	1	4	30	0	1	0	0	0	0	0	0	0	1069	1247	43	2		2	ASTN2	9	119738473	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	155399	119738473	21474958	163	44306											
ITIH5	80760	broad.mit.edu	37	chr10	7658100	7658100	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtaaaaacggtagtacctaGagcggggagcaaaaatacct	11	7	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7658100	T	T	7658100	1	4	30	0	1	0	0	0	0	0	0	0	7977	957	33	3		3	ITIH5	10	7658100	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08		7658100	127876647	164	44307											
SPAG6	9576	broad.mit.edu	37	chr10	22680767	22680767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacactcctgaacacgcacGggctgttgcagtcacaaata	8	13	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22680767	T	T	22680767	3	4	30	1	0	0	0	0	1	0	0	0	15098	1116	39	1	1145	1	SPAG6	10	22680767	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	15022667	22680767	112853980	165	44308											
ARHGAP12	94134	broad.mit.edu	37	chr10	32098161	32098161	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaaatataatcttaccatGattgactgcaaaccttagtt	5	7	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32098161	A	A	32098161	3	1	30	1	0	0	0	0	1	0	0	0	867	1290	45	4	431	4	ARHGAP12	10	32098161	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	9417394	32098161	103436586	166	44309											
PARD3	56288	broad.mit.edu	37	chr10	34649279	34649279	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaatgagcagttccttaatCataagaggcaaaatatttcc	6	8	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34649279	T	T	34649279	1	4	30	0	1	0	0	0	0	0	0	0	11537	841	29	4		4	PARD3	10	34649279	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	2551118	34649279	100885468	167	44310											
OR13A1	79290	broad.mit.edu	37	chr10	45799763	45799763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccggtattctgggtgctcCgaaaagccctgcaggatgaa	12	11	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45799763	A	A	45799763	2	1	30	1	0	0	0	0	0	0	0	1	11027	639	23	1		1	OR13A1	10	45799763	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	11150484	45799763	89734984	168	44311											
LDB3	11155	broad.mit.edu	37	chr10	88476273	88476273	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caactataaccctgcaccctCggtggcctacagcgggggcc	11	16	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88476273	A	A	88476273	4	1	30	1	0	0	0	0	0	1	0	0	8769	893	31	3	1791	3	LDB3	10	88476273	Nonsense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	42676510	88476273	47058474	169	44312											
TLL2	7093	broad.mit.edu	37	chr10	98129870	98129870	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctgagctgtcgtagccGtcgtaggcttccatgtagtc	14	11	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98129870	A	A	98129870	2	1	30	1	0	0	0	0	0	0	0	1	16069	1136	40	4		4	TLL2	10	98129870	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	9653597	98129870	37404877	170	44313											
NRAP	4892	broad.mit.edu	37	chr10	115410134	115410134	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtcaacaggaagttggactCctcagacccaggttcacatt	9	11	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115410134	G	G	115410134	1	3	30	0	1	0	0	0	0	0	0	0	10733	870	30	4		4	NRAP	10	115410134	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	17280264	115410134	20124613	171	44314											
C10orf118	55088	broad.mit.edu	37	chr10	115894549	115894549	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagataaagagaaaatattTaaaaatttcagctagtaaaa	5	3	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115894549	C	C	115894549	1	2	30	0	1	0	0	0	0	0	0	0	1598	1769	61	5		5	C10orf118	10	115894549	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	484415	115894549	19640198	172	44315											
C10orf137	26098	broad.mit.edu	37	chr10	127426555	127426555	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgcttagctatgttctAgaggtaagtttaagtttagt	10	4	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127426555	T	T	127426555	2	4	30	1	0	0	0	0	0	0	0	1	1605	407	15	5		5	C10orf137	10	127426555	Silent	SNP	A	TCGA-05-5423-01A-01D-1625-08	11532006	127426555	8108192	173	44316											
KRTAP5-6	440023	broad.mit.edu	37	chr11	1718520	1718520	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtggctccggctgtggGggctgtggctctggctgtgg	21	9	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1718520	T	T	1718520	2	4	30	1	0	0	0	0	0	0	0	1	8637	1219	43	2		2	KRTAP5-6	11	1718520	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08		1718520	133287996	174	44317											
PDE3B	5140	broad.mit.edu	37	chr11	14840851	14840851	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagtttaacttcagtttatCcatctttaaaatgaagatta	5	5	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14840851	A	A	14840851	1	1	30	0	1	0	0	0	0	0	0	0	11732	870	30	3		3	PDE3B	11	14840851	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	13122331	14840851	120165665	175	44318											
ANO3	63982	broad.mit.edu	37	chr11	26463371	26463371	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtggcacttttcaatagttCattcctgaaacaggtatcac	7	9	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26463371	G	G	26463371	1	3	30	0	1	0	0	0	0	0	0	0	698	841	29	4		4	ANO3	11	26463371	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	11622520	26463371	108543145	176	44319											
CCDC73	493860	broad.mit.edu	37	chr11	32674751	32674751	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgaagtaactgctgcataTgttggaaagaaatgatgata	11	5	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32674751	C	C	32674751	3	2	30	1	0	0	0	0	1	0	0	0	2874	1464	51	5	2410	5	CCDC73	11	32674751	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	6211380	32674751	102331765	177	44320											
MADD	8567	broad.mit.edu	37	chr11	47345883	47345883	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcccgacagcaaagcatcaAacccggtgaggagagttttt	11	11	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47345883	T	T	47345883	3	4	30	1	0	0	0	0	1	0	0	0	9240	14	1	5	4732	5	MADD	11	47345883	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	14671132	47345883	87660633	178	44321											
MYBPC3	4607	broad.mit.edu	37	chr11	47374196	47374196	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcttccccggctcaggCatcctgagagacgtcacacc	10	16	3	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47374196	T	T	47374196	3	4	30	1	0	0	0	0	1	0	0	0	10107	710	25	4	3950	4	MYBPC3	11	47374196	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	28313	47374196	87632320	179	44322											
AGBL2	79841	broad.mit.edu	37	chr11	47736124	47736124	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggagttcccgaagaaatgGagttccccgaagaaatttct	11	8	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47736124	A	A	47736124	1	1	30	0	1	0	0	0	0	0	0	0	376	1189	41	4		4	AGBL2	11	47736124	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	361928	47736124	87270392	180	44323											
OR4C13	283092	broad.mit.edu	37	chr11	49974040	49974040	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagagaatccaaaaatgcaGaaaatcatatttgttgtgtt	7	5	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49974040	T	T	49974040	3	4	30	1	0	0	0	0	1	0	0	0	11141	933	33	3	68	3	OR4C13	11	49974040	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	2237916	49974040	85032476	181	44324											
OR4C11	219429	broad.mit.edu	37	chr11	55371129	55371129	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagatgactacaattatgtGagacgtgcaagcggagagag	13	5	0	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55371129	A	A	55371129	3	1	30	1	0	0	0	0	1	0	0	0	11139	1290	45	4	213	4	OR4C11	11	55371129	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	5397089	55371129	79635387	182	44325											
OR4S2	219431	broad.mit.edu	37	chr11	55418437	55418437	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggtctttctcagagcccaGagattgagaaagtttgtttt	12	6	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55418437	T	T	55418437	4	4	30	1	0	0	0	0	0	1	0	0	11177	943	33	3	60	3	OR4S2	11	55418437	Nonsense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	47308	55418437	79588079	183	44326											
OR8J1	219477	broad.mit.edu	37	chr11	56127726	56127726	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttccaaactctgacatgGctcctgaaaatttcaccaga	5	11	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56127726	A	A	56127726	3	1	30	1	0	0	0	0	1	0	0	0	11335	1203	42	4	6	4	OR8J1	11	56127726	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	709289	56127726	78878790	184	44327											
SERPING1	710	broad.mit.edu	37	chr11	57379110	57379110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactgtgggagcagactgcAggacagcattgtgacagagg	16	7	0	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57379110	T	T	57379110	1	4	30	0	1	0	0	0	0	0	0	0	14229	203	7	5		5	SERPING1	11	57379110	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	1251384	57379110	77627406	185	44328											
MAP3K11	4296	broad.mit.edu	37	chr11	65375749	65375749	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggccgcacctccagacgtCactgcccttagagaaggtgg	13	13	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65375749	T	T	65375749	3	4	30	1	0	0	0	0	1	0	0	0	9337	826	29	4	1669	4	MAP3K11	11	65375749	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	7996639	65375749	69630767	186	44329											
ARAP1	116985	broad.mit.edu	37	chr11	72416818	72416819	+	Intron	INS	-	A	A													tgttgaatggggcagaccccINSaagtatcggtggcaagcagg							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72416819	A	A	72416818	6	5	30	0	1	1	1	0	0	0	0	0	840	609	21	0		0	ARAP1	11	72416818	Intron	INS	-	TCGA-05-5423-01A-01D-1625-08	7041069	72416818	62589698	187	44330											
XRRA1	143570	broad.mit.edu	37	chr11	74617397	74617397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggggctctttatggggaCttcccctgcctccattccag	10	13	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74617397	A	A	74617397	3	1	30	1	0	0	0	0	1	0	0	0	17588	565	20	3	1552	3	XRRA1	11	74617397	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	2200579	74617397	60389119	188	44331											
FAT3	120114	broad.mit.edu	37	chr11	92086077	92086077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacatgccccaacaatcCatgtagtcactcatgttcct	5	13	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92086077	A	A	92086077	3	1	30	1	0	0	0	0	1	0	0	0	5748	594	21	2	801	2	FAT3	11	92086077	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	17468680	92086077	42920439	189	44332											
TRPC6	7225	broad.mit.edu	37	chr11	101346979	101346979	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaactactactgacatctgTtttacaagaaaattctgcat	5	9	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101346979	A	A	101346979	1	1	30	0	1	0	0	0	0	0	0	0	16708	1740	60	5		5	TRPC6	11	101346979	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	9260902	101346979	33659537	190	44333											
MMP3	4314	broad.mit.edu	37	chr11	102709964	102709964	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcttcctgagggatttgcGccaaaagtgcctaaaatata	9	8	0	1	rs147533686	by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102709964	A	A	102709964	3	1	30	1	0	0	0	0	1	0	0	0	9760	1087	38	4	503	4	MMP3	11	102709964	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	1362985	102709964	32296552	191	44334											
POU2AF1	5450	broad.mit.edu	37	chr11	111225164	111225164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggggcccaggtagggctGgggccggaggctggtactgc	20	10	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111225164	T	T	111225164	3	4	30	1	0	0	0	0	1	0	0	0	12366	1348	47	2	181	2	POU2AF1	11	111225164	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	8515200	111225164	23781352	192	44335											
NCAM1	4684	broad.mit.edu	37	chr11	113078730	113078730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcaaagtctttggtaggGgcagtgggggcccaggtcac	15	10	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113078730	T	T	113078730	1	4	30	0	1	0	0	0	0	0	0	0	10297	1247	43	2		2	NCAM1	11	113078730	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	1853566	113078730	21927786	193	44336											
APOC3	345	broad.mit.edu	37	chr11	116701279	116701279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccctcacaggacacttcCttgcaggaacagaggtgcca	10	14	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116701279	A	A	116701279	1	1	30	0	1	0	0	0	0	0	0	0	801	696	24	2		2	APOC3	11	116701279	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	3622549	116701279	18305237	194	44337											
ST14	6768	broad.mit.edu	37	chr11	130059621	130059621	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctccgcctcaggctcccGctctctccccagcgagggca	11	19	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130059621	A	A	130059621	1	1	30	0	1	0	0	0	0	0	0	0	15329	1102	38	4		4	ST14	11	130059621	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	13358342	130059621	4946895	195	44338											
NDUFA9	4704	broad.mit.edu	37	chr12	4768321	4768321	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatgcgaatattaaaagctCttctagatatttgagaaata	7	4	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4768321	G	G	4768321	3	3	30	1	0	0	0	0	1	0	0	0	10367	913	32	4	548	4	NDUFA9	12	4768321	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08		4768321	129083574	196	44339											
VWF	7450	broad.mit.edu	37	chr12	6076587	6076587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttaaagaccgcagtgagGtcccactgcctgggtcccac	10	13	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6076587	T	T	6076587	1	4	30	0	1	0	0	0	0	0	0	0	17373	1276	44	3		3	VWF	12	6076587	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	1308266	6076587	127775308	197	44340											
ACSM4	341392	broad.mit.edu	37	chr12	7457137	7457137	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaaggagaaggtatatgaCgatgggcttccagtagatgc	13	6	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7457137	T	T	7457137	1	4	30	0	1	0	0	0	0	0	0	0	186	551	19	4		4	ACSM4	12	7457137	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1380550	7457137	126394758	198	44341											
CCDC91	55297	broad.mit.edu	37	chr12	28702079	28702079	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacagttaagtgctttaatAgctacggaaccagttgacat	8	7	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28702079	T	T	28702079	2	4	30	1	0	0	0	0	0	0	0	1	2898	410	15	5		5	CCDC91	12	28702079	Silent	SNP	A	TCGA-05-5423-01A-01D-1625-08	21244942	28702079	105149816	199	44342											
PKP2	5318	broad.mit.edu	37	chr12	32996393	32996393	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaagcttggtaattactcaGcatacttatatttggtccaa	6	7	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32996393	C	C	32996393	1	2	30	0	1	0	0	0	0	0	0	0	12080	986	34	4		4	PKP2	12	32996393	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	4294314	32996393	100855502	200	44343											
ARID2	196528	broad.mit.edu	37	chr12	46244483	46244483	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtaacaacttctgcatcCaatattgtctcagcaacttc	4	11	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46244483	A	A	46244483	2	1	30	1	0	0	0	0	0	0	0	1	917	581	21	2		2	ARID2	12	46244483	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	13248090	46244483	87607412	201	44344											
E2F7	144455	broad.mit.edu	37	chr12	77438543	77438543	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttctggctcataattcTcagagacttgtcttttctac	5	10	5	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77438543	A	A	77438543	4	1	30	1	0	0	0	0	0	1	0	0	4912	1559	54	5	1905	5	E2F7	12	77438543	Nonsense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	31194060	77438543	56413352	202	44345											
LRRIQ1	84125	broad.mit.edu	37	chr12	85521554	85521554	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggaccttttatctacaActctgtatttacagataata	6	7	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85521554	G	G	85521554	1	3	30	0	1	0	0	0	0	0	0	0	9116	58	2	5		5	LRRIQ1	12	85521554	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	8083011	85521554	48330341	203	44346											
UTP20	27340	broad.mit.edu	37	chr12	101757487	101757487	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcaagtttgtaggaaaagAtcaggttacaaaactcatcc	9	8	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101757487	G	G	101757487	3	3	30	1	0	0	0	0	1	0	0	0	17226	333	12	5	6102	5	UTP20	12	101757487	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	16235933	101757487	32094408	204	44347											
PRKAB1	5564	broad.mit.edu	37	chr12	120106160	120106160	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggacaggcccaagatcctGatggacagccccgaagacgc	14	13	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120106160	A	A	120106160	2	1	30	1	0	0	0	0	0	0	0	1	12601	1277	45	4		4	PRKAB1	12	120106160	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	18348673	120106160	13745735	205	44348											
DNAH10	196385	broad.mit.edu	37	chr12	124399141	124399141	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagggaggggacaccttagCacagggggtctacgtgggtg	20	7	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124399141	G	G	124399141	1	3	30	0	1	0	0	0	0	0	0	0	4638	725	25	4		4	DNAH10	12	124399141	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	4292981	124399141	9452754	206	44349											
FLT3	2322	broad.mit.edu	37	chr13	28602427	28602427	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagagctgtctgctttttcTgtcaaagaaaggagcattaa	9	7	4	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28602427	A	A	28602427	5	1	30	1	0	0	0	0	0	0	1	0	6000	1594	55	5	1076	5	FLT3	13	28602427	Splice_Site	SNP	T	TCGA-05-5423-01A-01D-1625-08		28602427	86567451	207	44350											
MLNR	2862	broad.mit.edu	37	chr13	49794774	49794774	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtaccgcctctggcgcTcgcggccctgggtgttcggg	15	15	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49794774	C	C	49794774	3	2	30	1	0	0	0	0	1	0	0	0	9725	1551	54	5	303	5	MLNR	13	49794774	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	21192347	49794774	65375104	208	44351											
LMO7	4008	broad.mit.edu	37	chr13	76397902	76397902	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcatctctttcccaagacCaggctgccacttctaaagcc	5	16	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76397902	T	T	76397902	4	4	30	1	0	0	0	0	0	1	0	0	8929	595	21	4	3060	4	LMO7	13	76397902	Nonsense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	26603128	76397902	38771976	209	44352											
MYH7	4625	broad.mit.edu	37	chr14	23900577	23900577	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaggtcaagaccagatggtCtagagcaagggtgagcttag	15	6	2	5			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23900577	A	A	23900577	1	1	30	0	1	0	0	0	0	0	0	0	10133	928	32	3		3	MYH7	14	23900577	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08		23900577	83448963	210	44353											
SOS2	6655	broad.mit.edu	37	chr14	50667801	50667801	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggtcttctgaactcgcTcctgctcaatcacagcagaa	8	12	4	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50667801	C	C	50667801	3	2	30	1	0	0	0	0	1	0	0	0	15051	1565	54	5	3867	5	SOS2	14	50667801	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	26767224	50667801	56681739	211	44354											
RHOJ	57381	broad.mit.edu	37	chr14	63735939	63735939	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtggtgtaggggagaaaaAgatccatttgcttatgcaga	14	5	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63735939	C	C	63735939	1	2	30	0	1	0	0	0	0	0	0	0	13450	87	3	5		5	RHOJ	14	63735939	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	13068138	63735939	43613601	212	44355											
SLC10A1	6554	broad.mit.edu	37	chr14	70245197	70245197	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacattgaggatggtggaacAgagttggacattttggcatc	13	6	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70245197	C	C	70245197	3	2	30	1	0	0	0	0	1	0	0	0	14486	188	7	5	261	5	SLC10A1	14	70245197	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	6509258	70245197	37104343	213	44356											
VSX2	338917	broad.mit.edu	37	chr14	74712019	74712019	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgagcccctctcccctcCactctcccctctctcggtga	5	23	3	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74712019	G	G	74712019	1	3	30	0	1	0	0	0	0	0	0	0	17359	609	21	4		4	VSX2	14	74712019	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	4466822	74712019	32637521	214	44357											
RPS6KA5	9252	broad.mit.edu	37	chr14	91356980	91356980	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaatccaaaatcaattaTtttaatttccaaattgtcat	2	7	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91356980	C	C	91356980	3	2	30	1	0	0	0	0	1	0	0	0	13765	1493	52	5	737	5	RPS6KA5	14	91356980	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	16644961	91356980	15992560	215	44358											
TECPR2	9895	broad.mit.edu	37	chr14	102906821	102906821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctaaccgggcttttgcttGtgggaaagtcaccatcaagg	11	9	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102906821	T	T	102906821	3	4	30	1	0	0	0	0	1	0	0	0	15866	1377	48	3	2665	3	TECPR2	14	102906821	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	11549841	102906821	4442719	216	44359											
AHNAK2	113146	broad.mit.edu	37	chr14	105408258	105408258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggcctgaatgcggagGtcagtggtcttgaggtcccc	17	9	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105408258	T	T	105408258	3	4	30	1	0	0	0	0	1	0	0	0	415	1252	44	3	3861	3	AHNAK2	14	105408258	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	2501437	105408258	1941282	217	44360											
RYR3	6263	broad.mit.edu	37	chr15	34032030	34032030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccttgtttttccctcaCagaaatatgacccagatctt	7	11	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34032030	A	A	34032030	1	1	30	0	1	0	0	0	0	0	0	0	13881	493	17	3		3	RYR3	15	34032030	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08		34032030	68499362	218	44361											
PLCB2	5330	broad.mit.edu	37	chr15	40581051	40581051	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgaggcaggccctcacCgactccttcacctctgcctc	8	19	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40581051	T	T	40581051	2	4	30	1	0	0	0	0	0	0	0	1	12123	639	23	4		4	PLCB2	15	40581051	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	6549021	40581051	61950341	219	44362											
PLCB2	5330	broad.mit.edu	37	chr15	40582753	40582753	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtggggtctgcccagcCctgggcctcccctccagggc	14	16	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40582753	T	T	40582753	1	4	30	0	1	0	0	0	0	0	0	0	12123	638	22	4		4	PLCB2	15	40582753	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1702	40582753	61948639	220	44363											
CTDSPL2	51496	broad.mit.edu	37	chr15	44789291	44789291	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataggaaacctgctcttccGttgaaaacaagaagcacacc	7	11	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44789291	T	T	44789291	2	4	30	1	0	0	0	0	0	0	0	1	4040	1132	40	3		3	CTDSPL2	15	44789291	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	4206538	44789291	57742101	221	44364											
GOLGA6C	653641	broad.mit.edu	37	chr15	75562585	75562585	+	3'UTR	DEL	C	-	-													ccctgcgtgccattcttctaCcaggcagccgagaacaggga							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75562585	-	-	75562585	6	5	30	0	1	1	0	1	0	0	0	0	6623	522	18	0		0	GOLGA6C	15	75562585	3'UTR	DEL	C	TCGA-05-5423-01A-01D-1625-08	30773294	75562585	26968807	222	44365											
IGF1R	3480	broad.mit.edu	37	chr15	99465655	99465655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctttgcaaggactatgcCcgcaggtatggtatgatcca	11	10	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99465655	A	A	99465655	3	1	30	1	0	0	0	0	1	0	0	0	7641	623	22	2	2522	2	IGF1R	15	99465655	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	23903070	99465655	3065737	223	44366											
CACNA1H	8912	broad.mit.edu	37	chr16	1261168	1261168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccttcactcccctccagGgtcatcagccgggccccggg	10	18	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1261168	T	T	1261168	3	4	30	1	0	0	0	0	1	0	0	0	2571	1246	43	2	4306	2	CACNA1H	16	1261168	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08		1261168	89093585	224	44367											
CASKIN1	57524	broad.mit.edu	37	chr16	2229900	2229900	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcaggcccggcctcccGctccttggccttgggcctgc	13	18	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2229900	T	T	2229900	2	4	30	1	0	0	0	0	0	0	0	1	2692	1086	38	3		3	CASKIN1	16	2229900	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	968732	2229900	88124853	225	44368											
OR1F1	4992	broad.mit.edu	37	chr16	3255025	3255025	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccatcattgctgtgtattTtaaccctctgtcctcccact	4	15	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3255025	G	G	3255025	3	3	30	1	0	0	0	0	1	0	0	0	11050	1841	64	5	781	5	OR1F1	16	3255025	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	1025125	3255025	87099728	226	44369											
SEPT12	124404	broad.mit.edu	37	chr16	4833836	4833836	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacgacagcagcagggcacGggggtgggggcagccggcag	20	10	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4833836	A	A	4833836	1	1	30	0	1	0	0	0	0	0	0	0	14175	1131	39	4		4	SEPT12	16	4833836	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	1578811	4833836	85520917	227	44370											
GRIN2A	2903	broad.mit.edu	37	chr16	9916122	9916122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaactgccatccttaccCcgttttcaggctgaccaagg	9	13	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9916122	A	A	9916122	3	1	30	1	0	0	0	0	1	0	0	0	6845	637	22	2	2243	2	GRIN2A	16	9916122	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	5082286	9916122	80438631	228	44371											
CLEC16A	23274	broad.mit.edu	37	chr16	11113919	11113919	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgtctctggtgttcaggtCgctgctgtcggacatgtgct	14	9	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11113919	T	T	11113919	1	4	30	0	1	0	0	0	0	0	0	0	3532	899	31	4		4	CLEC16A	16	11113919	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1197797	11113919	79240834	229	44372											
MYH11	4629	broad.mit.edu	37	chr16	15853611	15853611	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggcaaccaggggaacccGgttattctcaatgggctcca	13	11	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15853611	A	A	15853611	1	1	30	0	1	0	0	0	0	0	0	0	10125	1131	39	4		4	MYH11	16	15853611	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	4739692	15853611	74501142	230	44373											
MYH11	4629	broad.mit.edu	37	chr16	15878613	15878613	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtataaaacaaatgtcagcGttatttccatcacatggaca	6	8	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15878613	A	A	15878613	1	1	30	0	1	0	0	0	0	0	0	0	10125	1160	40	4		4	MYH11	16	15878613	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	25002	15878613	74476140	231	44374											
ACSM5	54988	broad.mit.edu	37	chr16	20423103	20423103	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctccaagcatgttgatgaGgaaatttggacctgggaatt	13	6	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20423103	C	C	20423103	1	2	30	0	1	0	0	0	0	0	0	0	187	1015	35	4		4	ACSM5	16	20423103	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	4544490	20423103	69931650	232	44375											
EEF2K	29904	broad.mit.edu	37	chr16	22237269	22237269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcggtatagctccagcggGtccccggcaaactccttcca	11	15	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22237269	T	T	22237269	2	4	30	1	0	0	0	0	0	0	0	1	4970	1248	44	3		3	EEF2K	16	22237269	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	1814166	22237269	68117484	233	44376											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25258612	25258612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccttgacgtagttgcttCgtaggatacttctcttgtta	8	8	1	1	rs138595438	by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25258612	A	A	25258612	3	1	30	1	0	0	0	0	1	0	0	0	17813	884	31	3	2010	3	ZKSCAN2	16	25258612	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	3021343	25258612	65096141	234	44377											
ITGAX	3687	broad.mit.edu	37	chr16	31374409	31374409	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggggggtgagtggctgaTgggcctggggtgggtggggt	25	5	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31374409	C	C	31374409	1	2	30	0	1	0	0	0	0	0	0	0	7959	1479	51	5		5	ITGAX	16	31374409	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	6115797	31374409	58980344	235	44378											
SHCBP1	79801	broad.mit.edu	37	chr16	46633812	46633812	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaatatcagcaccagtgcAgtccacaaaagtgtcgcctt	7	11	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46633812	T	T	46633812	3	4	30	1	0	0	0	0	1	0	0	0	14387	188	7	5	762	5	SHCBP1	16	46633812	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	15259403	46633812	43720941	236	44379											
MYLK3	91807	broad.mit.edu	37	chr16	46781866	46781866	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgtcaatgtggggaacCccatcagccccgcccgggcc	14	15	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46781866	A	A	46781866	2	1	30	1	0	0	0	0	0	0	0	1	10152	610	22	2		2	MYLK3	16	46781866	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	148054	46781866	43572887	237	44380											
NOD2	64127	broad.mit.edu	37	chr16	50753794	50753794	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacggccctccttttctgcCtgccgctgtgttctctcagc	9	16	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50753794	T	T	50753794	1	4	30	0	1	0	0	0	0	0	0	0	10612	696	24	4		4	NOD2	16	50753794	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	3971928	50753794	39600959	238	44381											
SALL1	6299	broad.mit.edu	37	chr16	51173150	51173150	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtttttaaatttaccccGgtctctaaaagggaagagga	10	6	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51173150	A	A	51173150	3	1	30	1	0	0	0	0	1	0	0	0	13921	1115	39	4	999	4	SALL1	16	51173150	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	419356	51173150	39181603	239	44382											
SALL1	6299	broad.mit.edu	37	chr16	51174200	51174200	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccgcagtctgccgctgGggagctcaggacgctactgc	17	13	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51174200	A	A	51174200	3	1	30	1	0	0	0	0	1	0	0	0	13921	1232	43	4	2049	4	SALL1	16	51174200	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	1050	51174200	39180553	240	44383											
SALL1	6299	broad.mit.edu	37	chr16	51175394	51175394	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgacgaatctgttcgaTcaattgcagctggtggatct	12	7	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51175394	A	A	51175394	3	1	30	1	0	0	0	0	1	0	0	0	13921	1435	50	5	3243	5	SALL1	16	51175394	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	1194	51175394	39179359	241	44384											
TOX3	27324	broad.mit.edu	37	chr16	52472881	52472881	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatattgtaggtatagcctGaataaataaaaaaggcatca	7	5	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52472881	A	A	52472881	1	1	30	0	1	0	0	0	0	0	0	0	16503	1305	45	4		4	TOX3	16	52472881	3'UTR	SNP	G	TCGA-05-5423-01A-01D-1625-08	1297487	52472881	37881872	242	44385											
CHD9	80205	broad.mit.edu	37	chr16	53272307	53272307	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcaaaactattcaatcaAttacattcctctatgaaatc	3	9	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53272307	G	G	53272307	3	3	30	1	0	0	0	0	1	0	0	0	3363	101	4	5	2728	5	CHD9	16	53272307	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	799426	53272307	37082446	243	44386											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53672334	53672334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagtctccttatattaaTgtgaaaacacgcatgtatgt	8	6	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53672334	C	C	53672334	1	2	30	0	1	0	0	0	0	0	0	0	13661	1479	51	5		5	RPGRIP1L	16	53672334	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	400027	53672334	36682419	244	44387											
RLTPR	146206	broad.mit.edu	37	chr16	67686373	67686373	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtttgtgccctccccaccAggatgacagtcctccacaga	9	15	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67686373	G	G	67686373	5	3	30	1	0	0	0	0	0	0	1	0	13505	202	7	5	2926	5	RLTPR	16	67686373	Splice_Site	SNP	A	TCGA-05-5423-01A-01D-1625-08	14014039	67686373	22668380	245	44388											
CYB5B	80777	broad.mit.edu	37	chr16	69458735	69458735	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatccatgggcgagtctAcgatgtcacccgcttcctca	10	13	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69458735	G	G	69458735	3	3	30	1	0	0	0	0	1	0	0	0	4156	391	14	5	151	5	CYB5B	16	69458735	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	1772362	69458735	20896018	246	44389											
RFWD3	55159	broad.mit.edu	37	chr16	74660514	74660514	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaaaattaaccaagtaCccaaacctcacacgcttaca	2	14	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74660514	G	G	74660514	1	3	30	0	1	0	0	0	0	0	0	0	13369	522	18	4		4	RFWD3	16	74660514	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	5201779	74660514	15694239	247	44390											
CDH13	1012	broad.mit.edu	37	chr16	83520147	83520147	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccgataatgccctcctgCggtataatatccgtcagcag	8	14	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83520147	T	T	83520147	3	4	30	1	0	0	0	0	1	0	0	0	3129	759	27	4	873	4	CDH13	16	83520147	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	8859633	83520147	6834606	248	44391											
TP53	7157	broad.mit.edu	37	chr17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatggtgaggatgggcCtccggttcatgccgcccatg	15	10	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577535	A	A	7577535	3	1	30	1	0	0	0	0	1	0	0	0	16505	681	24	2	544	2	TP53	17	7577535	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08		7577535	73617675	249	44392											
TP53	7157	broad.mit.edu	37	chr17	7578264	7578264	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgcaaatttccttccactcgGataagatgctgaggaggggc	12	10	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578264	C	C	7578264	3	2	30	1	0	0	0	0	1	0	0	0	16505	1164	41	4	709	4	TP53	17	7578264	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	729	7578264	73616946	250	44393											
DNAH2	146754	broad.mit.edu	37	chr17	7708677	7708677	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttatgattcttcgaggcaaCgagcccacatgggcagaggc	13	10	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7708677	T	T	7708677	2	4	30	1	0	0	0	0	0	0	0	1	4642	535	19	4		4	DNAH2	17	7708677	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	130413	7708677	73486533	251	44394											
CCDC144A	9720	broad.mit.edu	37	chr17	16608827	16608827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctttgtgtttactcaCcttttgcactgaacagaata	7	8	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16608827	A	A	16608827	1	1	30	0	1	0	0	0	0	0	0	0	2803	522	18	3		3	CCDC144A	17	16608827	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	8900150	16608827	64586383	252	44395											
RAB11FIP4	84440	broad.mit.edu	37	chr17	29855757	29855757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttcaatgccagggcccgCgaggtggagctcgagcacga	16	11	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29855757	A	A	29855757	2	1	30	1	0	0	0	0	0	0	0	1	13004	755	27	3		3	RAB11FIP4	17	29855757	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	13246930	29855757	51339453	253	44396											
SPACA3	124912	broad.mit.edu	37	chr17	31324388	31324388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagagagagacagacagaTacacactcacacacacacac	8	12	1	5			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31324388	C	C	31324388	1	2	30	0	1	0	0	0	0	0	0	0	15087	1421	49	5		5	SPACA3	17	31324388	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	1468631	31324388	49870822	254	44397											
STAT5A	6776	broad.mit.edu	37	chr17	40453374	40453374	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgtacgcctgctggtgggCgggaagctgaacgtgcacat	15	11	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40453374	T	T	40453374	2	4	30	1	0	0	0	0	0	0	0	1	15386	755	27	4		4	STAT5A	17	40453374	Silent	SNP	C	TCGA-05-5423-01A-01D-1625-08	9128986	40453374	40741836	255	44398											
COL1A1	1277	broad.mit.edu	37	chr17	48273488	48273488	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacccctccccactcccaGgccctgaggcctacaggcca	9	20	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48273488	A	A	48273488	1	1	30	0	1	0	0	0	0	0	0	0	3709	1015	35	4		4	COL1A1	17	48273488	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	7820114	48273488	32921722	256	44399											
TEX14	56155	broad.mit.edu	37	chr17	56679786	56679786	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcattcttcagaatatacCggatatcttgaaggttcata	7	7	5	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56679786	T	T	56679786	3	4	30	1	0	0	0	0	1	0	0	0	15900	652	23	4	3061	4	TEX14	17	56679786	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	8406298	56679786	24515424	257	44400											
MAP3K3	4215	broad.mit.edu	37	chr17	61771187	61771187	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgctgcatggcaggggGctgctgctgggctcagtgaa	16	10	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61771187	T	T	61771187	1	4	30	0	1	0	0	0	0	0	0	0	9343	1218	42	3		3	MAP3K3	17	61771187	3'UTR	SNP	G	TCGA-05-5423-01A-01D-1625-08	5091401	61771187	19424023	258	44401											
ABCA9	10350	broad.mit.edu	37	chr17	67003946	67003946	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactattttttctcccattgCgaaaaatgaatgaaatcaca	4	9	2	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67003946	T	T	67003946	3	4	30	1	0	0	0	0	1	0	0	0	39	768	27	4	1545	4	ABCA9	17	67003946	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	5232759	67003946	14191264	259	44402											
NUP85	79902	broad.mit.edu	37	chr17	73230633	73230633	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggagtggctggtctgaggTttttcttctcctgtttaggg	15	6	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73230633	G	G	73230633	1	3	30	0	1	0	0	0	0	0	0	0	10865	1740	60	5		5	NUP85	17	73230633	Intron	SNP	T	TCGA-05-5423-01A-01D-1625-08	6226687	73230633	7964577	260	44403											
KIAA0195	9772	broad.mit.edu	37	chr17	73484840	73484840	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcccacttgctgccggcagGatgacgagcacatcgtcctg	11	15	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73484840	A	A	73484840	3	1	30	1	0	0	0	0	1	0	0	0	8230	1188	41	4	635	4	KIAA0195	17	73484840	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	254207	73484840	7710370	261	44404											
SETBP1	26040	broad.mit.edu	37	chr18	42643114	42643114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcgaagtgcggaagatGtgcaactacaccaagatcct	11	10	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42643114	T	T	42643114	3	4	30	1	0	0	0	0	1	0	0	0	14242	1377	48	3	4453	3	SETBP1	18	42643114	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08		42643114	35434134	262	44405											
KIAA1632	57724	broad.mit.edu	37	chr18	43462448	43462448	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcttaaccattgtttaagaTcgaactaaaaagaaaaagaa	6	6	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43462448	A	A	43462448	3	1	30	1	0	0	0	0	1	0	0	0	8319	1435	50	5	2486	5	KIAA1632	18	43462448	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	819334	43462448	34614800	263	44406											
CXXC1	30827	broad.mit.edu	37	chr18	47809156	47809156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaggaacacctgcagcccCgcctgccccggccacgtccg	11	20	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47809156	T	T	47809156	1	4	30	0	1	0	0	0	0	0	0	0	4130	667	23	4		4	CXXC1	18	47809156	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	4346708	47809156	30268092	264	44407											
SERPINB5	5268	broad.mit.edu	37	chr18	61160254	61160254	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatccttgtggttaatgctGcctactttgttggcaagtgg	11	7	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61160254	A	A	61160254	3	1	30	1	0	0	0	0	1	0	0	0	14217	1319	46	4	507	4	SERPINB5	18	61160254	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	13351098	61160254	16916994	265	44408											
CDH7	1005	broad.mit.edu	37	chr18	63481633	63481633	+	Intron	DEL	T	-	-													atgaaaattttcaaataagcTtaatgtggaatcagtaacat							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63481633	-	-	63481633	6	5	30	0	1	1	0	1	0	0	0	0	3145	1624	56	0		0	CDH7	18	63481633	Intron	DEL	T	TCGA-05-5423-01A-01D-1625-08	2321379	63481633	14595615	266	44409											
KCNG2	26251	broad.mit.edu	37	chr18	77659344	77659344	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccactcgctggggctgcgttCgctgggcctgaccatgcgcc	14	16	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77659344	T	T	77659344	3	4	30	1	0	0	0	0	1	0	0	0	8098	893	31	4	935	4	KCNG2	18	77659344	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	14177711	77659344	417904	267	44410											
AP3D1	8943	broad.mit.edu	37	chr19	2138643	2138643	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcttgcagaccgcgttcGccttcaccgctatgttgtcc	9	15	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2138643	A	A	2138643	3	1	30	1	0	0	0	0	1	0	0	0	748	1087	38	4	3568	4	AP3D1	19	2138643	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08		2138643	56990340	268	44411											
AES	166	broad.mit.edu	37	chr19	3053807	3053807	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcccaacctccctgtccCggccccctgctaatccgact	5	23	0	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3053807	A	A	3053807	1	1	30	0	1	0	0	0	0	0	0	0	352	667	23	1		1	AES	19	3053807	3'UTR	SNP	C	TCGA-05-5423-01A-01D-1625-08	915164	3053807	56075176	269	44412											
PTPRS	5802	broad.mit.edu	37	chr19	5245847	5245847	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggacatggccacgcaggTgtagttggccgagtccttga	15	10	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5245847	A	A	5245847	3	1	30	1	0	0	0	0	1	0	0	0	12919	1696	59	5	5034	5	PTPRS	19	5245847	Missense_Mutation	SNP	T	TCGA-05-5423-01A-01D-1625-08	2192040	5245847	53883136	270	44413											
C3	718	broad.mit.edu	37	chr19	6694727	6694727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaagggttccagcctccCaaccagccagggccaagggg	13	13	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6694727	A	A	6694727	1	1	30	0	1	0	0	0	0	0	0	0	2226	609	21	2		2	C3	19	6694727	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1448880	6694727	52434256	271	44414											
ZNF559	84527	broad.mit.edu	37	chr19	9452452	9452452	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacactcatgccttaagactCacaggagaacttactttaga	6	10	2	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9452452	T	T	9452452	3	4	30	1	0	0	0	0	1	0	0	0	18117	826	29	4	339	4	ZNF559	19	9452452	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	2757725	9452452	49676531	272	44415											
COL5A3	50509	broad.mit.edu	37	chr19	10091864	10091864	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttagggtgcaaaggtatgaCgcaaacacaaaaagacaccc	10	9	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10091864	T	T	10091864	1	4	30	0	1	0	0	0	0	0	0	0	3730	551	19	4		4	COL5A3	19	10091864	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	639412	10091864	49037119	273	44416											
TYK2	7297	broad.mit.edu	37	chr19	10469871	10469871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtagctgagggcgctggCcagctgctgggccaccacca	15	14	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10469871	A	A	10469871	3	1	30	1	0	0	0	0	1	0	0	0	16936	739	26	3	1452	3	TYK2	19	10469871	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	378007	10469871	48659112	274	44417											
CYP4F22	126410	broad.mit.edu	37	chr19	15655095	15655095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagctggagtggtgaGtgtggggtcaggggaatgga	23	2	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15655095	T	T	15655095	1	4	30	0	1	0	0	0	0	0	0	0	4222	1044	36	3		3	CYP4F22	19	15655095	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	5185224	15655095	43473888	275	44418											
PLVAP	83483	broad.mit.edu	37	chr19	17487843	17487843	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgaagttgagctccttGgtcaagttggactgggaggc	17	6	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17487843	A	A	17487843	2	1	30	1	0	0	0	0	0	0	0	1	12211	1335	47	4		4	PLVAP	19	17487843	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	1832748	17487843	41641140	276	44419											
ZNF492	57615	broad.mit.edu	37	chr19	22817467	22817467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctggcagccggacccccGggcgtcctgtctcttccctg	13	18	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22817467	T	T	22817467	1	4	30	0	1	0	0	0	0	0	0	0	18070	1131	39	1		1	ZNF492	19	22817467	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	5329624	22817467	36311516	277	44420											
C19orf55	148137	broad.mit.edu	37	chr19	36253234	36253234	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgcatcccatgctgtgGctccccttcaggaaataaag	9	13	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36253234	C	C	36253234	3	2	30	1	0	0	0	0	1	0	0	0	1956	1203	42	4	538	4	C19orf55	19	36253234	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	13435767	36253234	22875749	278	44421											
DPF1	8193	broad.mit.edu	37	chr19	38709662	38709662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgaggaccggcccttccGggaggccaccctccttcttc	10	19	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38709662	T	T	38709662	3	4	30	1	0	0	0	0	1	0	0	0	4756	1116	39	1	894	1	DPF1	19	38709662	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	2456428	38709662	20419321	279	44422											
EGLN2	112398	broad.mit.edu	37	chr19	41306994	41306994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggaggcgctgccctctGcgcccgagcgcctggccctg	16	16	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41306994	T	T	41306994	3	4	30	1	0	0	0	0	1	0	0	0	5009	1319	46	3	519	3	EGLN2	19	41306994	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	2597332	41306994	17821989	280	44423											
ATP5SL	55101	broad.mit.edu	37	chr19	41944255	41944255	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattgccctctggggccactGccgcacccaggcgatggatg	14	14	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41944255	A	A	41944255	3	1	30	1	0	0	0	0	1	0	0	0	1168	1319	46	4	710	4	ATP5SL	19	41944255	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	637261	41944255	17184728	281	44424											
PSG8	440533	broad.mit.edu	37	chr19	43258594	43258594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatttgggggataaagagCttttgtcctgatagctgaaa	12	4	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43258594	A	A	43258594	3	1	30	1	0	0	0	0	1	0	0	0	12767	796	28	3	171	3	PSG8	19	43258594	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	1314339	43258594	15870389	282	44425											
ZNF234	10780	broad.mit.edu	37	chr19	44648689	44648689	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctggccacgctttcatgtCtctttttgtgtcttccatag	7	13	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44648689	T	T	44648689	1	4	30	0	1	0	0	0	0	0	0	0	17913	928	32	4		4	ZNF234	19	44648689	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	1390095	44648689	14480294	283	44426											
MYADM	91663	broad.mit.edu	37	chr19	54377805	54377805	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctctttgttcttcttgccCgagttttctttatggagtac	7	10	4	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54377805	T	T	54377805	1	4	30	0	1	0	0	0	0	0	0	0	10100	667	23	4		4	MYADM	19	54377805	3'UTR	SNP	C	TCGA-05-5423-01A-01D-1625-08	9729116	54377805	4751178	284	44427											
ZNF582	147948	broad.mit.edu	37	chr19	56901664	56901664	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatgaccaaccaatcataaGactgaaaagcacccaaaaac	4	11	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56901664	A	A	56901664	1	1	30	0	1	0	0	0	0	0	0	0	18141	957	33	4		4	ZNF582	19	56901664	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	2523859	56901664	2227319	285	44428											
ZNF416	55659	broad.mit.edu	37	chr19	58083957	58083957	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttccgcactcatcacactCaaagggcctagctccactgt	6	15	3	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58083957	A	A	58083957	4	1	30	1	0	0	0	0	0	1	0	0	18020	835	29	3	473	3	ZNF416	19	58083957	Nonsense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	1182293	58083957	1045026	286	44429											
C20orf103	24141	broad.mit.edu	37	chr20	9496363	9496363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcgaagacctgggttgccCgccttctttcccacaccccg	8	18	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9496363	T	T	9496363	1	4	30	0	1	0	0	0	0	0	0	0	2097	667	23	4		4	C20orf103	20	9496363	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08		9496363	53529157	287	44430											
TRPC4AP	26133	broad.mit.edu	37	chr20	33593397	33593397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccacgtgggcatctggtgCagctccctcagtcattcttg	12	13	4	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33593397	A	A	33593397	1	1	30	0	1	0	0	0	0	0	0	0	16706	725	25	3		3	TRPC4AP	20	33593397	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	24097034	33593397	29432123	288	44431											
L3MBTL	26013	broad.mit.edu	37	chr20	42162872	42162872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgggctccctctgtggggCtcagctctgctgagctgcgc	14	13	3	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42162872	A	A	42162872	1	1	30	0	1	0	0	0	0	0	0	0	8663	812	28	3		3	L3MBTL	20	42162872	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	8569475	42162872	20862648	289	44432											
ADNP	23394	broad.mit.edu	37	chr20	49510018	49510018	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcctgtgactgagagagGgaaggagactttaactggcc	15	7	0	4	rs146061441		TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49510018	A	A	49510018	2	1	30	1	0	0	0	0	0	0	0	1	323	1219	43	4		4	ADNP	20	49510018	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	7347146	49510018	13515502	290	44433											
ADNP	23394	broad.mit.edu	37	chr20	49510304	49510304	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatcatgttgactcctgtaGaatttaagttaggctttggt	9	6	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49510304	A	A	49510304	3	1	30	1	0	0	0	0	1	0	0	0	323	942	33	4	2365	4	ADNP	20	49510304	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	286	49510304	13515216	291	44434											
RTEL1	51750	broad.mit.edu	37	chr20	62325872	62325872	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaccgtgtgcagcctaCgacttggtgggtccctcagt	12	13	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62325872	T	T	62325872	1	4	30	0	1	0	0	0	0	0	0	0	13831	551	19	4		4	RTEL1	20	62325872	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	12815568	62325872	699648	292	44435											
LIPI	149998	broad.mit.edu	37	chr21	15538748	15538748	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggataaaaatctatatgtCccaagggctcttgaatgcct	8	8	2	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15538748	T	T	15538748	3	4	30	1	0	0	0	0	1	0	0	0	8898	855	30	4	738	4	LIPI	21	15538748	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08		15538748	32591147	293	44436											
USP25	29761	broad.mit.edu	37	chr21	17199412	17199412	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttactcagtcccggatacCtccagatttgcccatgcatc	6	14	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17199412	T	T	17199412	3	4	30	1	0	0	0	0	1	0	0	0	17182	681	24	4	1637	4	USP25	21	17199412	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	1660664	17199412	30930483	294	44437											
COL6A1	1291	broad.mit.edu	37	chr21	47422377	47422377	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccccgccagccagggtggCcttgtccccagaaagacgag	13	16	0	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47422377	T	T	47422377	1	4	30	0	1	0	0	0	0	0	0	0	3731	754	26	4		4	COL6A1	21	47422377	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	30222965	47422377	707518	295	44438											
PIWIL3	440822	broad.mit.edu	37	chr22	25145815	25145815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaagagaccagcatgaCcatcagtgaaaccttagaaa	7	10	1	4			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25145815	A	A	25145815	1	1	30	0	1	0	0	0	0	0	0	0	12054	522	18	3		3	PIWIL3	22	25145815	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08		25145815	26158751	296	44439											
POLR3H	171568	broad.mit.edu	37	chr22	41936719	41936719	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctttggtgtgtgatgcGccatccccagggaatacata	10	12	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41936719	A	A	41936719	2	1	30	1	0	0	0	0	0	0	0	1	12331	1074	38	4		4	POLR3H	22	41936719	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	16790904	41936719	9367847	297	44440											
PNPLA3	80339	broad.mit.edu	37	chr22	44333166	44333166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacaggtacccactcctcGgggtgagcacgggcagcacc	13	15	0	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44333166	T	T	44333166	1	4	30	0	1	0	0	0	0	0	0	0	12261	1131	39	1		1	PNPLA3	22	44333166	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	2396447	44333166	6971400	298	44441											
MOV10L1	54456	broad.mit.edu	37	chr22	50555597	50555597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttcaagaaatcctggccGctgcaaggagctccttttgc	9	11	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50555597	A	A	50555597	3	1	30	1	0	0	0	0	1	0	0	0	9813	1087	38	4	1346	4	MOV10L1	22	50555597	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	6222431	50555597	748969	299	44442											
ARSD	414	broad.mit.edu	37	chrX	2838571	2838571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcgtgcgccaccacgcCtggcctgggatcttttttat	11	13	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2838571	A	A	2838571	1	1	30	0	1	0	0	0	0	0	0	0	993	696	24	2		2	ARSD	23	2838571	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08		2838571	152431989	300	44443											
MXRA5	25878	broad.mit.edu	37	chrX	3229355	3229355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgacatagcgcttggtgcGtccaccgctgtcatccgact	11	14	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3229355	A	A	3229355	3	1	30	1	0	0	0	0	1	0	0	0	10097	1145	40	4	1601	4	MXRA5	23	3229355	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	390784	3229355	152041205	301	44444											
PDK3	5165	broad.mit.edu	37	chrX	24537108	24537108	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctggtagctccagagctGgaagttgaagaattcaatgg	12	7	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24537108	T	T	24537108	2	4	30	1	0	0	0	0	0	0	0	1	11771	1335	47	2		2	PDK3	23	24537108	Silent	SNP	G	TCGA-05-5423-01A-01D-1625-08	21307753	24537108	130733452	302	44445											
FAM47C	442444	broad.mit.edu	37	chrX	37028425	37028425	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctccgcccggagcctcccAatactggagtgtcccatctc	9	17	2	0	rs145580328	byFrequency	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37028425	G	G	37028425	3	3	30	1	0	0	0	0	1	0	0	0	5622	130	5	5	1944	5	FAM47C	23	37028425	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	12491317	37028425	118242135	303	44446											
DDX3X	1654	broad.mit.edu	37	chrX	41203476	41203476	+	Intron	DEL	T	-	-													tgaccttgaagttcataacaTtttttttgcttatagttttc							TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41203476	-	-	41203476	6	5	30	0	1	1	0	1	0	0	0	0	4391	1508	52	0		0	DDX3X	23	41203476	Intron	DEL	T	TCGA-05-5423-01A-01D-1625-08	4175051	41203476	114067084	304	44447											
CXorf36	79742	broad.mit.edu	37	chrX	45051168	45051168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctaaagatctccacagggCgccagattttggaatcatct	9	10	4	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45051168	A	A	45051168	3	1	30	1	0	0	0	0	1	0	0	0	4139	768	27	3	1046	3	CXorf36	23	45051168	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	3847692	45051168	110219392	305	44448											
WNK3	65267	broad.mit.edu	37	chrX	54319769	54319769	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaattgtcacctataaaaAaagaaaataagtaacaggta	5	5	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54319769	G	G	54319769	1	3	30	0	1	0	0	0	0	0	0	0	17506	29	1	5		5	WNK3	23	54319769	Intron	SNP	A	TCGA-05-5423-01A-01D-1625-08	9268601	54319769	100950791	306	44449											
STARD8	9754	broad.mit.edu	37	chrX	67937333	67937333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagccccacccagggcCaggagggtccccaggacaaa	11	17	1	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67937333	A	A	67937333	3	1	30	1	0	0	0	0	1	0	0	0	15381	595	21	2	599	2	STARD8	23	67937333	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	13617564	67937333	87333227	307	44450											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912915	77912915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgctacatgaccctcccCttggcagagttgatggatgc	12	11	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77912915	A	A	77912915	3	1	30	1	0	0	0	0	1	0	0	0	17717	681	24	2	428	2	ZCCHC5	23	77912915	Missense_Mutation	SNP	C	TCGA-05-5423-01A-01D-1625-08	9975582	77912915	77357645	308	44451											
HDX	139324	broad.mit.edu	37	chrX	83723704	83723704	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catatttcttcctggtccggGcaaggttgtactttggttct	10	9	2	0			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83723704	A	A	83723704	3	1	30	1	0	0	0	0	1	0	0	0	7093	1203	42	4	1077	4	HDX	23	83723704	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	5810789	83723704	71546856	309	44452											
KLHL4	56062	broad.mit.edu	37	chrX	86877364	86877364	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggcatgatgtgcagaatAggcaaggagaactggggatg	18	4	0	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86877364	T	T	86877364	3	4	30	1	0	0	0	0	1	0	0	0	8462	411	15	5	1096	5	KLHL4	23	86877364	Missense_Mutation	SNP	A	TCGA-05-5423-01A-01D-1625-08	3153660	86877364	68393196	310	44453											
XPNPEP2	7512	broad.mit.edu	37	chrX	128896778	128896778	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggatgggctggaggtgtGggcagcatgtcagtgacttt	17	7	1	1			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128896778	C	C	128896778	1	2	30	0	1	0	0	0	0	0	0	0	17570	1363	47	4		4	XPNPEP2	23	128896778	Intron	SNP	G	TCGA-05-5423-01A-01D-1625-08	42019414	128896778	26373782	311	44454											
SAGE1	55511	broad.mit.edu	37	chrX	134988657	134988657	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgttgactcttcgaccacGgcgtattaatatgacagaca	9	9	1	3			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134988657	A	A	134988657	3	1	30	1	0	0	0	0	1	0	0	0	13920	1116	39	4	705	4	SAGE1	23	134988657	Missense_Mutation	SNP	G	TCGA-05-5423-01A-01D-1625-08	6091879	134988657	20281903	312	44455											
AFF2	2334	broad.mit.edu	37	chrX	147985646	147985646	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccctgtttcggttagctcCttatgtttctgaagagcatt	8	10	1	2			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147985646	T	T	147985646	1	4	30	0	1	0	0	0	0	0	0	0	357	696	24	4		4	AFF2	23	147985646	Intron	SNP	C	TCGA-05-5423-01A-01D-1625-08	12996989	147985646	7284914	313	44456											
DOCK7	85440	broad.mit.edu	37	chr1	63119567	63119567	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaacaggaaatgatgatGctataagaagtaggctctaa	11	5	1	3			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63119567	A	A	63119567	1	1	31	0	1	0	0	0	0	0	0	0	4732	1334	46	4		4	DOCK7	1	63119567	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08		63119567	186131054	1	44457											
LCE3D	84648	broad.mit.edu	37	chr1	152552192	152552192	+	Frame_Shift_Del	DEL	C	-	-													ccccgccttgctgaccactgCccctgtcacaggagttgggc					rs137868314	byFrequency	TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152552192	-	-	152552192	7	5	31	1	0	1	0	1	0	0	0	0	8744	739	26	0	61	0	LCE3D	1	152552192	Frame_Shift_Del	DEL	C	TCGA-05-5425-01A-02D-1625-08	89432625	152552192	96698429	2	44458											
IVL	3713	broad.mit.edu	37	chr1	152882412	152882434	+	Frame_Shift_Del	DEL	GTGCCTGTCGAGCTCCCAGTGGA	-	-													tgcctcccccatgccagaagGtgcctgtcgagctcccagtg							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152882434	-	-	152882412	7	5	31	1	0	1	0	1	0	0	0	0	7999	1261	44	0	141	0	IVL	1	152882412	Frame_Shift_Del	DEL	GTGCCTGTCGAGCTCCCAGTGGA	TCGA-05-5425-01A-02D-1625-08	330220	152882412	96368209	3	44459											
OR6N2	81442	broad.mit.edu	37	chr1	158747203	158747204	+	Frame_Shift_Ins	INS	-	A	A													atcttagggatagtggtagcINStgtataccacaactccaaga							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158747204	A	A	158747203	7	5	31	1	0	1	1	0	0	0	0	0	11301	797	28	0	733	0	OR6N2	1	158747203	Frame_Shift_Ins	INS	-	TCGA-05-5425-01A-02D-1625-08	5864791	158747203	90503418	4	44460											
CFH	3075	broad.mit.edu	37	chr1	196648885	196648885	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagaggagatgctgtatGcactgaatctggatggcgtc	14	6	1	4			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196648885	C	C	196648885	3	2	31	1	0	0	0	0	1	0	0	0	3313	1319	46	4	774	4	CFH	1	196648885	Missense_Mutation	SNP	G	TCGA-05-5425-01A-02D-1625-08	37901682	196648885	52601736	5	44461											
USH2A	7399	broad.mit.edu	37	chr1	215812355	215812356	+	Intron	INS	-	AG	AG													aaaaaaaaaacaaaaaaaaaINSaactctgacaacacttggca							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	215812356	AG	AG	215812355	6	5	31	0	1	1	1	0	0	0	0	0	17162	29	1	0		0	USH2A	1	215812355	Intron	INS	-	TCGA-05-5425-01A-02D-1625-08	19163470	215812355	33438266	6	44462											
KIAA1804	84451	broad.mit.edu	37	chr1	233497909	233497909	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagcgcgagatcgacgtGctggagcgggaacttaacat	15	9	0	2			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233497909	T	T	233497909	2	4	31	1	0	0	0	0	0	0	0	1	8329	1306	46	3		3	KIAA1804	1	233497909	Silent	SNP	G	TCGA-05-5425-01A-02D-1625-08	17685554	233497909	15752712	7	44463											
LYST	1130	broad.mit.edu	37	chr1	235894397	235894397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaataacatctctgtaaaCgtctcctctctcgatttggc	5	11	3	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235894397	A	A	235894397	3	1	31	1	0	0	0	0	1	0	0	0	9216	536	19	3	2599	3	LYST	1	235894397	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	2396488	235894397	13356224	8	44464											
OR2T11	127077	broad.mit.edu	37	chr1	248789739	248789740	+	Frame_Shift_Ins	INS	-	A	A													gtggtgaaggcctttttgcgINSaccttcagcagagggcatgc					rs144343861		TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248789740	A	A	248789739	7	5	31	1	0	1	1	0	0	0	0	0	11112	1058	37	0	263	0	OR2T11	1	248789739	Frame_Shift_Ins	INS	-	TCGA-05-5425-01A-02D-1625-08	12895342	248789739	460882	9	44465											
PLEKHB2	55041	broad.mit.edu	37	chr2	132109738	132109738	+	Intron	DEL	G	-	-													ctcctagctcgccctcatctGgaggggtgcctggaggattg							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132109738	-	-	132109738	6	5	31	0	1	1	0	1	0	0	0	0	12160	1363	47	0		0	PLEKHB2	2	132109738	Intron	DEL	G	TCGA-05-5425-01A-02D-1625-08		132109738	111089635	10	44466											
YSK4	80122	broad.mit.edu	37	chr2	135756277	135756277	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaatatttgttgaccaaaagGactcactgtggaattcaatg	8	6	2	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135756277	C	C	135756277	1	2	31	0	1	0	0	0	0	0	0	0	17622	1189	41	4		4	YSK4	2	135756277	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	3646539	135756277	107443096	11	44467											
IRS1	3667	broad.mit.edu	37	chr2	227659611	227659611	+	Intron	DEL	G	-	-													attctccctgaggaagcagtGggaaagaacaggaaggggca							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	227659611	-	-	227659611	6	5	31	0	1	1	0	1	0	0	0	0	7910	1363	47	0		0	IRS1	2	227659611	Intron	DEL	G	TCGA-05-5425-01A-02D-1625-08	91903334	227659611	15539762	12	44468											
SAMD7	344658	broad.mit.edu	37	chr3	169644533	169644533	+	Frame_Shift_Del	DEL	G	-	-													agcaccctcagaaaccttcaGggaaaccccatgctagcggc							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169644533	-	-	169644533	7	5	31	1	0	1	0	1	0	0	0	0	13935	991	35	0	497	0	SAMD7	3	169644533	Frame_Shift_Del	DEL	G	TCGA-05-5425-01A-02D-1625-08		169644533	28377897	13	44469											
KCNMB3	27094	broad.mit.edu	37	chr3	178968422	178968422	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttctttttctagaccaTggcagagagtcacagattga	8	7	3	4			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178968422	C	C	178968422	1	2	31	0	1	0	0	0	0	0	0	0	8146	1479	51	5		5	KCNMB3	3	178968422	Intron	SNP	T	TCGA-05-5425-01A-02D-1625-08	9323889	178968422	19054008	14	44470											
KLHL6	89857	broad.mit.edu	37	chr3	183217606	183217606	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcctgggcttggtgcgttCcgaaatgatctggaaatcga	12	9	1	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183217606	A	A	183217606	4	1	31	1	0	0	0	0	0	1	0	0	8464	864	30	3	962	3	KLHL6	3	183217606	Nonsense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	4249184	183217606	14804824	15	44471											
SLIT2	9353	broad.mit.edu	37	chr4	20544279	20544279	+	Intron	DEL	C	-	-													gcttgtctttcttttcttttCtttttccttgatgataaatg							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20544279	-	-	20544279	6	5	31	0	1	1	0	1	0	0	0	0	14854	928	32	0		0	SLIT2	4	20544279	Intron	DEL	C	TCGA-05-5425-01A-02D-1625-08		20544279	170609997	16	44472											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881337	33881337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcatcttaacatgggagaGgttcccatatctcttctcca	6	12	4	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33881337	A	A	33881337	3	1	31	1	0	0	0	0	1	0	0	0	257	1000	35	4	4500	4	ADAMTS12	5	33881337	Missense_Mutation	SNP	G	TCGA-05-5425-01A-02D-1625-08		33881337	147033923	17	44473											
ADAMTS6	11174	broad.mit.edu	37	chr5	64748457	64748457	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcttatcattatttacttCacagcaaaaatttatgacct	2	8	3	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64748457	A	A	64748457	1	1	31	0	1	0	0	0	0	0	0	0	270	841	29	3		3	ADAMTS6	5	64748457	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08	30867120	64748457	116166803	18	44474											
MAST4	375449	broad.mit.edu	37	chr5	66255199	66255199	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgaccaatagctatttagcAtttgtttgtactgacagcct	8	9	0	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66255199	C	C	66255199	1	2	31	0	1	0	0	0	0	0	0	0	9419	232	8	5		5	MAST4	5	66255199	Intron	SNP	A	TCGA-05-5425-01A-02D-1625-08	1506742	66255199	114660061	19	44475											
MAP1B	4131	broad.mit.edu	37	chr5	71494207	71494207	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctacagtgggtgcaggCgtgcttcacatcactgaaaa	10	12	2	1	rs142504773		TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71494207	A	A	71494207	2	1	31	1	0	0	0	0	0	0	0	1	9320	755	27	3		3	MAP1B	5	71494207	Silent	SNP	C	TCGA-05-5425-01A-02D-1625-08	5239008	71494207	109421053	20	44476											
PSD2	84249	broad.mit.edu	37	chr5	139201498	139201498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattcttgaaggccttccCgctgatgggggagacacaag	12	10	1	3			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139201498	A	A	139201498	3	1	31	1	0	0	0	0	1	0	0	0	12753	652	23	1	1136	1	PSD2	5	139201498	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	67707291	139201498	41713762	21	44477											
PCDHGA9	56107	broad.mit.edu	37	chr5	140784118	140784118	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttgcaaatgcaggtgacGgcaagtgacagtggaagccc	14	8	0	2			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140784118	A	A	140784118	2	1	31	1	0	0	0	0	0	0	0	1	11655	1103	39	4		4	PCDHGA9	5	140784118	Silent	SNP	G	TCGA-05-5425-01A-02D-1625-08	1582620	140784118	40131142	22	44478											
RUFY1	80230	broad.mit.edu	37	chr5	179023688	179023688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcacgagcaatggtaggGgccctgcagggagcctgggc	18	11	0	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179023688	T	T	179023688	1	4	31	0	1	0	0	0	0	0	0	0	13849	1247	43	2		2	RUFY1	5	179023688	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	38239570	179023688	1891572	23	44479											
FLT4	2324	broad.mit.edu	37	chr5	180039941	180039941	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttccctgatgccaccttcTcatggacacaacccccacgc	6	19	1	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180039941	A	A	180039941	1	1	31	0	1	0	0	0	0	0	0	0	6002	1566	54	5		5	FLT4	5	180039941	Intron	SNP	T	TCGA-05-5425-01A-02D-1625-08	1016253	180039941	875319	24	44480											
BTN1A1	696	broad.mit.edu	37	chr6	26508056	26508056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgatttattggcaatgCttcaatattcaaatagtcat	5	6	4	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26508056	A	A	26508056	1	1	31	0	1	0	0	0	0	0	0	0	1569	812	28	3		3	BTN1A1	6	26508056	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08		26508056	144607011	25	44481											
GABBR1	2550	broad.mit.edu	37	chr6	29574824	29574824	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcacgtcaggggaaaatGctctgtgccccaggagccaa	13	12	2	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29574824	T	T	29574824	1	4	31	0	1	0	0	0	0	0	0	0	6215	1334	46	3		3	GABBR1	6	29574824	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	3066768	29574824	141540243	26	44482											
PACSIN1	29993	broad.mit.edu	37	chr6	34499478	34499478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaacgggggcgccaaccCctttgaggacgactccaagg	13	14	0	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34499478	A	A	34499478	3	1	31	1	0	0	0	0	1	0	0	0	11468	623	22	2	1169	2	PACSIN1	6	34499478	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	4924654	34499478	136615589	27	44483											
SNRPC	6631	broad.mit.edu	37	chr6	34735809	34735809	+	Intron	DEL	G	-	-													ttaatcttaaggggtgtgacGgggcaggctatcctttgatt							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34735809	-	-	34735809	6	5	31	0	1	1	0	1	0	0	0	0	14977	1131	39	0		0	SNRPC	6	34735809	Intron	DEL	G	TCGA-05-5425-01A-02D-1625-08	236331	34735809	136379258	28	44484											
CPNE5	57699	broad.mit.edu	37	chr6	36720782	36720782	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttccctctccccaaggCccatgaaattggctgtatct	6	16	2	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36720782	A	A	36720782	1	1	31	0	1	0	0	0	0	0	0	0	3847	754	26	3		3	CPNE5	6	36720782	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08	1984973	36720782	134394285	29	44485											
TTBK1	84630	broad.mit.edu	37	chr6	43222527	43222527	+	Intron	DEL	T	-	-													cagcgccacccagctctgggTgtccacactcggcctgtccc					rs11318521		TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43222527	-	-	43222527	6	5	31	0	1	1	0	1	0	0	0	0	16802	1711	59	0		0	TTBK1	6	43222527	Intron	DEL	T	TCGA-05-5425-01A-02D-1625-08	6501745	43222527	127892540	30	44486											
MRPS17	51373	broad.mit.edu	37	chr7	56022557	56022563	+	Intron	DEL	TCACAGA	-	-													ttacatattacattaccaggTcacagatgggaactactgat							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56022563	-	-	56022557	6	5	31	0	1	1	0	1	0	0	0	0	9921	1682	58	0		0	MRPS17	7	56022557	Intron	DEL	TCACAGA	TCGA-05-5425-01A-02D-1625-08		56022557	103116106	31	44487											
CSMD3	114788	broad.mit.edu	37	chr8	113301729	113301729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacttctcgccagacaggaCtgcattaggaggaacgccag	11	11	1	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113301729	A	A	113301729	3	1	31	1	0	0	0	0	1	0	0	0	3980	565	20	3	2170	3	CSMD3	8	113301729	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08		113301729	33062293	32	44488											
FAM75A6	389730	broad.mit.edu	37	chr9	43627777	43627777	+	Frame_Shift_Del	DEL	G	-	-													acaggtctctggtgggtggcGggaaagaggatcttgctgga							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43627777	-	-	43627777	7	5	31	1	0	1	0	1	0	0	0	0	5674	1116	39	0	3125	0	FAM75A6	9	43627777	Frame_Shift_Del	DEL	G	TCGA-05-5425-01A-02D-1625-08		43627777	97585654	33	44489											
NOL8	55035	broad.mit.edu	37	chr9	95069324	95069324	+	Intron	DEL	A	-	-													cctctttgaggaaaagggatAattaatactctcttggaaaa							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95069324	-	-	95069324	6	5	31	0	1	1	0	1	0	0	0	0	10622	377	13	0		0	NOL8	9	95069324	Intron	DEL	A	TCGA-05-5425-01A-02D-1625-08	51441547	95069324	46144107	34	44490											
STOM	2040	broad.mit.edu	37	chr9	124111370	124111370	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcatttttcagcttctggGgggtaacagcattgacgtac	10	9	3	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124111370	A	A	124111370	1	1	31	0	1	0	0	0	0	0	0	0	15430	1247	43	4		4	STOM	9	124111370	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	29042046	124111370	17102061	35	44491											
FAM107B	83641	broad.mit.edu	37	chr10	14572508	14572508	+	5'UTR	DEL	G	-	-													tatggtcaatatcctcaggtGggctgtctgaaagagaaaga							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14572508	-	-	14572508	6	5	31	0	1	1	0	1	0	0	0	0	5436	1348	47	0		0	FAM107B	10	14572508	5'UTR	DEL	G	TCGA-05-5425-01A-02D-1625-08		14572508	120962239	36	44492											
ANKRD26	22852	broad.mit.edu	37	chr10	27295756	27295757	+	Intron	INS	-	A	A													gtagtatctattagccaaacINSaatggaaagggatcccactc							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27295757	A	A	27295756	6	5	31	0	1	1	1	0	0	0	0	0	654	493	17	0		0	ANKRD26	10	27295756	Intron	INS	-	TCGA-05-5425-01A-02D-1625-08	12723248	27295756	108238991	37	44493											
SORCS3	22986	broad.mit.edu	37	chr10	106937822	106937823	+	Splice_Site	INS	-	G	G													gtgtacttgtttccaacacaINSgggtgagttttgatgagggc							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106937823	G	G	106937822	8	5	31	1	0	1	1	0	0	0	1	0	15046	202	7	0	1954	0	SORCS3	10	106937822	Splice_Site	INS	-	TCGA-05-5425-01A-02D-1625-08	79642066	106937822	28596925	38	44494											
ADD3	120	broad.mit.edu	37	chr10	111875952	111875952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacgcaggctacttcctgGcaactaatttccaggtaagg	10	11	0	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111875952	T	T	111875952	1	4	31	0	1	0	0	0	0	0	0	0	306	1218	42	3		3	ADD3	10	111875952	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	4938130	111875952	23658795	39	44495											
HTRA1	5654	broad.mit.edu	37	chr10	124268261	124268261	+	Frame_Shift_Del	DEL	G	-	-													aagattaaaaagttcctcacGgagtcccatgaccgacaggc							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124268261	-	-	124268261	7	5	31	1	0	1	0	1	0	0	0	0	7523	1103	39	0	1117	0	HTRA1	10	124268261	Frame_Shift_Del	DEL	G	TCGA-05-5425-01A-02D-1625-08	12392309	124268261	11266486	40	44496											
TPP1	1200	broad.mit.edu	37	chr11	6640051	6640052	+	Frame_Shift_Del	DEL	GA	-	-													acacagcctgcaccagctccGagagtctttccacattctgc					rs2734715	byFrequency;by1000genomes	TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6640052	-	-	6640051	7	5	31	1	0	1	0	1	0	0	0	0	16535	1059	37	0	1550	0	TPP1	11	6640051	Frame_Shift_Del	DEL	GA	TCGA-05-5425-01A-02D-1625-08		6640051	128366465	41	44497											
OR8I2	120586	broad.mit.edu	37	chr11	55861360	55861360	+	Frame_Shift_Del	DEL	G	-	-													tctcctgtgtagatacattcGgcacagaaatggtgagcttt							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55861360	-	-	55861360	7	5	31	1	0	1	0	1	0	0	0	0	11334	1116	39	0	579	0	OR8I2	11	55861360	Frame_Shift_Del	DEL	G	TCGA-05-5425-01A-02D-1625-08	49221309	55861360	79145156	42	44498											
OR8J3	81168	broad.mit.edu	37	chr11	55904780	55904780	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagcaggaggcagagccGccgagacaccaccaccatgt	11	16	0	2			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904780	T	T	55904780	2	4	31	1	0	0	0	0	0	0	0	1	11336	1086	38	3		3	OR8J3	11	55904780	Silent	SNP	G	TCGA-05-5425-01A-02D-1625-08	43420	55904780	79101736	43	44499											
AHNAK	79026	broad.mit.edu	37	chr11	62290506	62290506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccagtctgggccttgaaCatcaacatctggagcattaa	10	10	3	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62290506	A	A	62290506	3	1	31	1	0	0	0	0	1	0	0	0	414	478	17	3	6409	3	AHNAK	11	62290506	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	6385726	62290506	72716010	44	44500											
NRXN2	9379	broad.mit.edu	37	chr11	64418218	64418218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaggtgccatgggaagagGgattgaaagggagaccccag	16	8	0	3			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64418218	A	A	64418218	1	1	31	0	1	0	0	0	0	0	0	0	10761	1247	43	4		4	NRXN2	11	64418218	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	2127712	64418218	70588298	45	44501											
PYGM	5837	broad.mit.edu	37	chr11	64514592	64514592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctgcttccaaaggcgcCtggctccaactaccaggacc	9	16	0	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64514592	A	A	64514592	1	1	31	0	1	0	0	0	0	0	0	0	12970	696	24	2		2	PYGM	11	64514592	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08	96374	64514592	70491924	46	44502											
CNTN5	53942	broad.mit.edu	37	chr11	100064482	100064482	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcttagctatgaagtgcTaagaaaaaaaaaaacagaac	7	6	0	3			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100064482	A	A	100064482	1	1	31	0	1	0	0	0	0	0	0	0	3676	1537	53	5		5	CNTN5	11	100064482	Intron	SNP	T	TCGA-05-5425-01A-02D-1625-08	35549890	100064482	34942034	47	44503											
CNTN5	53942	broad.mit.edu	37	chr11	100226948	100226948	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgattccttcaacttcctgGtgaaaactgctgacttaatt	6	9	1	3			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100226948	A	A	100226948	4	1	31	1	0	0	0	0	0	1	0	0	3676	1270	44	4	3390	4	CNTN5	11	100226948	Nonsense_Mutation	SNP	G	TCGA-05-5425-01A-02D-1625-08	162466	100226948	34779568	48	44504											
FAM55A	120400	broad.mit.edu	37	chr11	114392937	114392937	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttagtggctgggcttcttAggaacagtctttcaatagcc	10	9	3	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114392937	G	G	114392937	3	3	31	1	0	0	0	0	1	0	0	0	5635	420	15	5	250	5	FAM55A	11	114392937	Missense_Mutation	SNP	A	TCGA-05-5425-01A-02D-1625-08	14165989	114392937	20613579	49	44505											
TECTA	7007	broad.mit.edu	37	chr11	121000975	121000975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgggaaataggtgccatGctgggccttactcaggactt	13	9	1	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121000975	T	T	121000975	1	4	31	0	1	0	0	0	0	0	0	0	15869	1334	46	3		3	TECTA	11	121000975	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	6608038	121000975	14005541	50	44506											
OR8G2	26492	broad.mit.edu	37	chr11	124096034	124096034	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatcaatgaattactggttCtggtcttgagtgcatttaac	8	7	3	2			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124096034	A	A	124096034	3	1	31	1	0	0	0	0	1	0	0	0	11329	912	32	3	639	3	OR8G2	11	124096034	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	3095059	124096034	10910482	51	44507											
RERGL	79785	broad.mit.edu	37	chr12	18234319	18234319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcatcggttttccagtgCcagcttttgcccttcttccc	8	14	1	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18234319	A	A	18234319	3	1	31	1	0	0	0	0	1	0	0	0	13341	739	26	3	197	3	RERGL	12	18234319	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08		18234319	115617576	52	44508											
KRT82	3888	broad.mit.edu	37	chr12	52788664	52788664	+	3'UTR	DEL	G	-	-													tggagtcaataaagggaggtGgggttttggaacatccttgt							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52788664	-	-	52788664	6	5	31	0	1	1	0	1	0	0	0	0	8567	1363	47	0		0	KRT82	12	52788664	3'UTR	DEL	G	TCGA-05-5425-01A-02D-1625-08	34554345	52788664	81063231	53	44509											
MYO1A	4640	broad.mit.edu	37	chr12	57431656	57431657	+	Frame_Shift_Del	DEL	TC	-	-													tccccatggggtcttaccggTctcccccattccagtgaggc							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57431657	-	-	57431656	7	5	31	1	0	1	0	1	0	0	0	0	10162	1667	58	0	1217	0	MYO1A	12	57431656	Frame_Shift_Del	DEL	TC	TCGA-05-5425-01A-02D-1625-08	4642992	57431656	76420239	54	44510											
GPN3	51184	broad.mit.edu	37	chr12	110905973	110905974	+	Frame_Shift_Ins	INS	-	G	G													tcctcaccttcccgctgcccINSgcggggcccatgaccagctg							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110905974	G	G	110905973	7	5	31	1	0	1	1	0	0	0	0	0	6684	639	23	0	880	0	GPN3	12	110905973	Frame_Shift_Ins	INS	-	TCGA-05-5425-01A-02D-1625-08	53474317	110905973	22945922	55	44511											
ATP8A2	51761	broad.mit.edu	37	chr13	26348924	26348924	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctgttcataaggacattCtgtttgtgacttttattcct	6	8	3	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26348924	A	A	26348924	1	1	31	0	1	0	0	0	0	0	0	0	1197	928	32	3		3	ATP8A2	13	26348924	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08		26348924	88820954	56	44512											
GPR183	1880	broad.mit.edu	37	chr13	99948054	99948054	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataaagttcacacctgcatAtgtgttgatgtaaaacacta	6	8	1	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99948054	T	T	99948054	3	4	31	1	0	0	0	0	1	0	0	0	6743	449	16	5	743	5	GPR183	13	99948054	Missense_Mutation	SNP	A	TCGA-05-5425-01A-02D-1625-08	73599130	99948054	15221824	57	44513											
NALCN	259232	broad.mit.edu	37	chr13	101748111	101748111	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaggataggaaactctttCttctttcacggaatcccaaa	6	9	4	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101748111	A	A	101748111	1	1	31	0	1	0	0	0	0	0	0	0	10242	928	32	3		3	NALCN	13	101748111	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08	1800057	101748111	13421767	58	44514											
GNG2	54331	broad.mit.edu	37	chr14	52433382	52433382	+	Frame_Shift_Del	DEL	A	-	-													aaaacccgtttagggagaagAagtttttctgtgccatcctt							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52433382	-	-	52433382	7	5	31	1	0	1	0	1	0	0	0	0	6591	247	9	0	199	0	GNG2	14	52433382	Frame_Shift_Del	DEL	A	TCGA-05-5425-01A-02D-1625-08		52433382	54916158	59	44515											
AGBL1	123624	broad.mit.edu	37	chr15	87531233	87531233	+	Frame_Shift_Del	DEL	T	-	-													tacagattaaaatcatccaaTttcctgccaaagcatatttg							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87531233	-	-	87531233	7	5	31	1	0	1	0	1	0	0	0	0	375	1490	52	0	3185	0	AGBL1	15	87531233	Frame_Shift_Del	DEL	T	TCGA-05-5425-01A-02D-1625-08		87531233	15000159	60	44516											
PLIN1	5346	broad.mit.edu	37	chr15	90220602	90220609	+	Intron	DEL	GCATCTCC	-	-													tatcttgctctaagtcccctGcatctcccctccctgcttct							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90220609	-	-	90220602	6	5	31	0	1	1	0	1	0	0	0	0	12184	1334	46	0		0	PLIN1	15	90220602	Intron	DEL	GCATCTCC	TCGA-05-5425-01A-02D-1625-08	2689369	90220602	12310790	61	44517											
C17orf102	400591	broad.mit.edu	37	chr17	32906077	32906078	+	Frame_Shift_Ins	INS	-	G	G													gcccagcgaactctgggggtINSgggggtagggtgccccctac							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32906078	G	G	32906077	7	5	31	1	0	1	1	0	0	0	0	0	1863	1696	59	0	288	0	C17orf102	17	32906077	Frame_Shift_Ins	INS	-	TCGA-05-5425-01A-02D-1625-08		32906077	48289133	62	44518											
KIAA0802	23255	broad.mit.edu	37	chr18	8784569	8784569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgcggggctgcggggtGgtgcgcccttaccggggcct	19	11	0	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8784569	T	T	8784569	3	4	31	1	0	0	0	0	1	0	0	0	8264	1348	47	2	1473	2	KIAA0802	18	8784569	Missense_Mutation	SNP	G	TCGA-05-5425-01A-02D-1625-08		8784569	69292679	63	44519											
ROCK1	6093	broad.mit.edu	37	chr18	18624092	18624092	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcatacaagtaccaaaatCtgctaacttcaaatgtccag	4	11	3	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18624092	A	A	18624092	3	1	31	1	0	0	0	0	1	0	0	0	13628	913	32	3	3530	3	ROCK1	18	18624092	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	9839523	18624092	59453156	64	44520											
ZNF536	9745	broad.mit.edu	37	chr19	30935040	30935040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgggcaaggggcgtgggCgtgtgcgcgaggagaaccgc	20	10	0	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30935040	A	A	30935040	3	1	31	1	0	0	0	0	1	0	0	0	18101	768	27	3	573	3	ZNF536	19	30935040	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08		30935040	28193943	65	44521											
TSHZ3	57616	broad.mit.edu	37	chr19	31769178	31769178	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttctaagtcattttcagtCaagtaatggtatttggaaga	8	5	5	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31769178	A	A	31769178	3	1	31	1	0	0	0	0	1	0	0	0	16750	825	29	3	1728	3	TSHZ3	19	31769178	Missense_Mutation	SNP	C	TCGA-05-5425-01A-02D-1625-08	834138	31769178	27359805	66	44522											
HPN	3249	broad.mit.edu	37	chr19	35556239	35556239	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacgggctggggcaacacGcagtactatggtgagtcctg	16	9	0	2			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35556239	T	T	35556239	2	4	31	1	0	0	0	0	0	0	0	1	7403	1074	38	3		3	HPN	19	35556239	Silent	SNP	G	TCGA-05-5425-01A-02D-1625-08	3787061	35556239	23572744	67	44523											
C19orf55	148137	broad.mit.edu	37	chr19	36252916	36252916	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctatcccctgatgttcAcaggtatataaacaggttcc	6	13	1	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36252916	G	G	36252916	1	3	31	0	1	0	0	0	0	0	0	0	1956	174	6	5		5	C19orf55	19	36252916	Intron	SNP	A	TCGA-05-5425-01A-02D-1625-08	696677	36252916	22876067	68	44524											
SUPT5H	6829	broad.mit.edu	37	chr19	39949724	39949724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagagacgtaagggcatGgtgggggcaggtgggggcag	24	4	0	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39949724	T	T	39949724	1	4	31	0	1	0	0	0	0	0	0	0	15517	1363	47	2		2	SUPT5H	19	39949724	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	3696808	39949724	19179259	69	44525											
CYP2A7	1549	broad.mit.edu	37	chr19	41497169	41497169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcaggataaaaggcccaGttggaggctgcagcagggtg	18	7	1	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41497169	T	T	41497169	1	4	31	0	1	0	0	0	0	0	0	0	4196	1044	36	3		3	CYP2A7	19	41497169	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	1547445	41497169	17631814	70	44526											
PSG5	5673	broad.mit.edu	37	chr19	43688994	43688994	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctatcacctcgctttatgaTgtgtaaggtgtaggatcctg	10	9	1	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43688994	A	A	43688994	3	1	31	1	0	0	0	0	1	0	0	0	12764	1464	51	5	653	5	PSG5	19	43688994	Missense_Mutation	SNP	T	TCGA-05-5425-01A-02D-1625-08	2191825	43688994	15439989	71	44527											
PSG9	5678	broad.mit.edu	37	chr19	43765862	43765862	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcaagcctaggcctactctGgtttgcttggggcagaaagt	12	9	2	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43765862	C	C	43765862	1	2	31	0	1	0	0	0	0	0	0	0	12768	1363	47	4		4	PSG9	19	43765862	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	76868	43765862	15363121	72	44528											
ZNF283	284349	broad.mit.edu	37	chr19	44352416	44352416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaaggcttttagtcgtGgctatcaccttactcaacat	10	9	2	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44352416	T	T	44352416	3	4	31	1	0	0	0	0	1	0	0	0	17946	1348	47	2	1677	2	ZNF283	19	44352416	Missense_Mutation	SNP	G	TCGA-05-5425-01A-02D-1625-08	586554	44352416	14776567	73	44529											
ZNF404	342908	broad.mit.edu	37	chr19	44384237	44384237	+	Frame_Shift_Del	DEL	C	-	-													ctgatccgagtttaaatattCccactcctcctgagagaagt							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44384237	-	-	44384237	7	5	31	1	0	1	0	1	0	0	0	0	18013	864	30	0	1605	0	ZNF404	19	44384237	Frame_Shift_Del	DEL	C	TCGA-05-5425-01A-02D-1625-08	31821	44384237	14744746	74	44530											
TGM6	343641	broad.mit.edu	37	chr20	2411674	2411674	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaacagctcagcatcgaGtaagtgccagcctggggggc	15	11	1	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2411674	T	T	2411674	5	4	31	1	0	0	0	0	0	0	1	0	15957	1043	36	3	2014	3	TGM6	20	2411674	Splice_Site	SNP	G	TCGA-05-5425-01A-02D-1625-08		2411674	60613846	75	44531											
PLCB4	5332	broad.mit.edu	37	chr20	9319497	9319497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttcttcctccatgctctGtgatgtaacttatttttttt	5	9	2	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9319497	T	T	9319497	1	4	31	0	1	0	0	0	0	0	0	0	12125	1392	48	3		3	PLCB4	20	9319497	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08	6907823	9319497	53706023	76	44532											
PAK7	57144	broad.mit.edu	37	chr20	9524933	9524933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtcattgcccccatctcCtgtggtcaccaactatctca	5	15	4	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9524933	A	A	9524933	1	1	31	0	1	0	0	0	0	0	0	0	11499	696	24	2		2	PAK7	20	9524933	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08	205436	9524933	53500587	77	44533											
JAG1	182	broad.mit.edu	37	chr20	10653551	10653559	+	In_Frame_Del	DEL	CCCGGGTTC	-	-													cgcgggtgcacttgcggtctCccgggttccgggcgccgccg							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10653559	-	-	10653551	7	5	31	1	0	1	0	1	0	0	0	0	8004	855	30	0	3571	0	JAG1	20	10653551	In_Frame_Del	DEL	CCCGGGTTC	TCGA-05-5425-01A-02D-1625-08	1128618	10653551	52371969	78	44534											
DEFB123	245936	broad.mit.edu	37	chr20	30037939	30037939	+	Frame_Shift_Del	DEL	C	-	-													ataaaatgtgctgcgtgaagCccaagtaccagccaaaagaa							TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30037939	-	-	30037939	7	5	31	1	0	1	0	1	0	0	0	0	4448	739	26	0	172	0	DEFB123	20	30037939	Frame_Shift_Del	DEL	C	TCGA-05-5425-01A-02D-1625-08	19384388	30037939	32987581	79	44535											
FAM83C	128876	broad.mit.edu	37	chr20	33874320	33874320	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccttgccagtgcacccCcgatgccagtcctttggcta	9	17	0	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33874320	T	T	33874320	1	4	31	0	1	0	0	0	0	0	0	0	5688	638	22	4		4	FAM83C	20	33874320	3'UTR	SNP	C	TCGA-05-5425-01A-02D-1625-08	3836381	33874320	29151200	80	44536											
TRPM2	7226	broad.mit.edu	37	chr21	45820279	45820279	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggctgcggggctgcgGgactgtggggctgcggggct	23	9	0	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45820279	C	C	45820279	1	2	31	0	1	0	0	0	0	0	0	0	16711	1247	43	4		4	TRPM2	21	45820279	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08		45820279	2309616	81	44537											
FRMPD4	9758	broad.mit.edu	37	chrX	12734146	12734146	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccgccccacccaaaaccaGacagtacagtaatgtgtctt	6	16	1	1			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12734146	T	T	12734146	1	4	31	0	1	0	0	0	0	0	0	0	6119	957	33	3		3	FRMPD4	23	12734146	Intron	SNP	G	TCGA-05-5425-01A-02D-1625-08		12734146	142536414	82	44538											
COL4A6	1288	broad.mit.edu	37	chrX	107455063	107455063	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagaggatgggacagcaagAgcctgaaaccatgtggcttt	13	7	0	3			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107455063	T	T	107455063	1	4	31	0	1	0	0	0	0	0	0	0	3727	319	11	5		5	COL4A6	23	107455063	Intron	SNP	A	TCGA-05-5425-01A-02D-1625-08	94720917	107455063	47815497	83	44539											
AFF2	2334	broad.mit.edu	37	chrX	148035003	148035003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatgggaacggtaaaccCcactctacctgcatttcaca	6	12	2	0			TCGA-05-5425-01A-02D-1625-08	TCGA-05-5425-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148035003	A	A	148035003	1	1	31	0	1	0	0	0	0	0	0	0	357	638	22	2		2	AFF2	23	148035003	Intron	SNP	C	TCGA-05-5425-01A-02D-1625-08	40579940	148035003	7235557	84	44540											
PLCH2	9651	broad.mit.edu	37	chr1	2419131	2419131	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagacgtcattgaaaccatCaacaaatatgccttcatcaa	4	10	4	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2419131	T	T	2419131	2	4	32	1	0	0	0	0	0	0	0	1	12133	816	29	4		4	PLCH2	1	2419131	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08		2419131	246831490	1	44541											
CCDC27	148870	broad.mit.edu	37	chr1	3672290	3672290	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccgggcctcccttgtgcaGaactagccctgccttccctg	9	18	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3672290	C	C	3672290	1	2	32	0	1	0	0	0	0	0	0	0	2828	957	33	4		4	CCDC27	1	3672290	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1253159	3672290	245578331	2	44542											
CHD5	26038	broad.mit.edu	37	chr1	6196405	6196405	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcccacgccacccacccCaacaccctgctcctgcagga	7	21	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6196405	T	T	6196405	1	4	32	0	1	0	0	0	0	0	0	0	3359	609	21	4		4	CHD5	1	6196405	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2524115	6196405	243054216	3	44543											
PLEKHG5	57449	broad.mit.edu	37	chr1	6531112	6531112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcatgtactccatgcagcCctcctcctccatgcagtagc	8	17	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6531112	A	A	6531112	3	1	32	1	0	0	0	0	1	0	0	0	12168	623	22	2	1726	2	PLEKHG5	1	6531112	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	334707	6531112	242719509	4	44544											
UTS2	10911	broad.mit.edu	37	chr1	7912986	7912986	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgaaaggatatttccctGgagtcaaggagaggaagaga	14	4	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7912986	A	A	7912986	2	1	32	1	0	0	0	0	0	0	0	1	17231	1335	47	4		4	UTS2	1	7912986	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1381874	7912986	241337635	5	44545											
PIK3CD	5293	broad.mit.edu	37	chr1	9780180	9780180	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttcagatgagaagggCgagctgctgaaccccacggg	15	10	1	3	rs149764166		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9780180	T	T	9780180	2	4	32	1	0	0	0	0	0	0	0	1	12010	755	27	4		4	PIK3CD	1	9780180	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1867194	9780180	239470441	6	44546											
CLCN6	1185	broad.mit.edu	37	chr1	11867212	11867212	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccttggagaaacacaggagGaggaggatgagattcttcca	13	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11867212	A	A	11867212	3	1	32	1	0	0	0	0	1	0	0	0	3498	1175	41	4	118	4	CLCN6	1	11867212	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2087032	11867212	237383409	7	44547											
VPS13D	55187	broad.mit.edu	37	chr1	12331089	12331089	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacttgagctgagagtggctGaagctgcccgaagacaatat	12	8	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12331089	A	A	12331089	3	1	32	1	0	0	0	0	1	0	0	0	17319	1291	45	4	2073	4	VPS13D	1	12331089	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	463877	12331089	236919532	8	44548											
CASP9	842	broad.mit.edu	37	chr1	15831069	15831069	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtggcggctccctccccaCcagacccacccagagggagg	13	17	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15831069	T	T	15831069	1	4	32	0	1	0	0	0	0	0	0	0	2705	522	18	4		4	CASP9	1	15831069	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3499980	15831069	233419552	9	44549											
ALPL	249	broad.mit.edu	37	chr1	21890740	21890740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggcagccgggcagggacGgggtgaggcggggcctctgg	25	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21890740	T	T	21890740	1	4	32	0	1	0	0	0	0	0	0	0	547	1131	39	1		1	ALPL	1	21890740	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	6059671	21890740	227359881	10	44550											
RAP1GAP	5909	broad.mit.edu	37	chr1	21944462	21944462	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatggaatgtagtcctcctCtgtctgcaaaacacaaacag	8	10	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21944462	G	G	21944462	3	3	32	1	0	0	0	0	1	0	0	0	13145	922	32	4	2079	4	RAP1GAP	1	21944462	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	53722	21944462	227306159	11	44551											
ZNF436	80818	broad.mit.edu	37	chr1	23688970	23688970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacttgtagggcctctccCctgtgtggactcgatagtgt	11	12	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23688970	A	A	23688970	3	1	32	1	0	0	0	0	1	0	0	0	18036	623	22	2	511	2	ZNF436	1	23688970	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1744508	23688970	225561651	12	44552											
MYOM3	127294	broad.mit.edu	37	chr1	24422047	24422047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgctattttggggacatGggctttggatatgagtttga	13	4	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24422047	T	T	24422047	1	4	32	0	1	0	0	0	0	0	0	0	10187	1363	47	2		2	MYOM3	1	24422047	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	733077	24422047	224828574	13	44553											
IL28RA	163702	broad.mit.edu	37	chr1	24507392	24507392	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagctcctggctggtctTgactcaggccatcccaagct	11	14	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24507392	A	A	24507392	1	1	32	0	1	0	0	0	0	0	0	0	7754	1827	63	5		5	IL28RA	1	24507392	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	85345	24507392	224743229	14	44554											
MAN1C1	57134	broad.mit.edu	37	chr1	26110248	26110248	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactcccggtgaaccactcaGacagctccggcagagcctgg	11	16	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26110248	A	A	26110248	3	1	32	1	0	0	0	0	1	0	0	0	9305	942	33	4	1907	4	MAN1C1	1	26110248	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1602856	26110248	223140373	15	44555											
WDTC1	23038	broad.mit.edu	37	chr1	27609887	27609887	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggacccgctgcaccacAagaagctgctctccatgcac	10	15	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27609887	C	C	27609887	3	2	32	1	0	0	0	0	1	0	0	0	17469	131	5	5	252	5	WDTC1	1	27609887	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	1499639	27609887	221640734	16	44556											
KHDRBS1	10657	broad.mit.edu	37	chr1	32504102	32504102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtaattacctttcctaCtctctatgattttgatcttt	5	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32504102	A	A	32504102	1	1	32	0	1	0	0	0	0	0	0	0	8216	580	20	3		3	KHDRBS1	1	32504102	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4894215	32504102	216746519	17	44557											
CSMD2	114784	broad.mit.edu	37	chr1	34180307	34180307	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaaggtgtcgcccacgcCaaactgcaagcccttccgga	11	15	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34180307	T	T	34180307	3	4	32	1	0	0	0	0	1	0	0	0	3979	594	21	4	7493	4	CSMD2	1	34180307	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1676205	34180307	215070314	18	44558											
GRIK3	2899	broad.mit.edu	37	chr1	37356600	37356600	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgtgttgggcagcagagtCctgttcctgttgatgatgtt	14	6	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37356600	T	T	37356600	2	4	32	1	0	0	0	0	0	0	0	1	6841	854	30	4		4	GRIK3	1	37356600	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	3176293	37356600	211894021	19	44559											
MACF1	23499	broad.mit.edu	37	chr1	39853098	39853098	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaaggggaatctctacttCtttctgtacctcctggagaa	9	10	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39853098	G	G	39853098	3	3	32	1	0	0	0	0	1	0	0	0	9232	913	32	4	14759	4	MACF1	1	39853098	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2496498	39853098	209397523	20	44560											
CDC20	991	broad.mit.edu	37	chr1	43825017	43825017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggccccctcacccatgcGggccgccaaccgatcccaca	8	23	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43825017	T	T	43825017	3	4	32	1	0	0	0	0	1	0	0	0	3089	1116	39	1	133	1	CDC20	1	43825017	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3971919	43825017	205425604	21	44561											
PTPRF	5792	broad.mit.edu	37	chr1	44071154	44071154	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggaggcggggcagggctgGaggtaaccagcagtgacagt	21	7	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44071154	C	C	44071154	1	2	32	0	1	0	0	0	0	0	0	0	12909	1189	41	4		4	PTPRF	1	44071154	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	246137	44071154	205179467	22	44562											
KIF2C	11004	broad.mit.edu	37	chr1	45221724	45221724	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtttccagggagcacccCctgaaatactctccttctgc	7	15	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45221724	T	T	45221724	1	4	32	0	1	0	0	0	0	0	0	0	8369	638	22	4		4	KIF2C	1	45221724	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1150570	45221724	204028897	23	44563											
EIF2B3	8891	broad.mit.edu	37	chr1	45453838	45453838	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atactgcaagcaaatggggtGaaggggtgctcttctgagct	14	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45453838	A	A	45453838	1	1	32	0	1	0	0	0	0	0	0	0	5042	1305	45	4		4	EIF2B3	1	45453838	5'Flank	SNP	G	TCGA-05-5428-01A-01D-1625-08	232114	45453838	203796783	24	44564			1	38		4	4	494	N	G_C	4.03917e-07
EIF2B3	8891	broad.mit.edu	37	chr1	45454241	45454241	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaccctggaataattctgtGaaagcaggaacctttataac	7	8	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45454241	A	A	45454241	1	1	32	0	1	0	0	0	0	0	0	0	5042	1305	45	4		4	EIF2B3	1	45454241	5'Flank	SNP	G	TCGA-05-5428-01A-01D-1625-08	403	45454241	203796380	25	44565			1	38		4	4	494	N	G_C	4.03917e-07
EIF2B3	8891	broad.mit.edu	37	chr1	45454284	45454284	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcctttctctacattgctCagagcacgaaagttttctgc	6	11	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45454284	G	G	45454284	1	3	32	0	1	0	0	0	0	0	0	0	5042	841	29	4		4	EIF2B3	1	45454284	5'Flank	SNP	C	TCGA-05-5428-01A-01D-1625-08	43	45454284	203796337	26	44566			1	38		4	4	494	N	G_C	4.03917e-07
EIF2B3	8891	broad.mit.edu	37	chr1	45454331	45454331	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaccttgtctgcaaacgGctcgaaggacacgcggccca	12	13	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45454331	A	A	45454331	1	1	32	0	1	0	0	0	0	0	0	0	5042	1218	42	4		4	EIF2B3	1	45454331	5'Flank	SNP	G	TCGA-05-5428-01A-01D-1625-08	47	45454331	203796290	27	44567			1	38		4	4	494	N	G_C	4.03917e-07
TESK2	10420	broad.mit.edu	37	chr1	45811759	45811759	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggcatctttgaagattcaGatgtgcagctgagagacctt	11	8	2	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45811759	A	A	45811759	1	1	32	0	1	0	0	0	0	0	0	0	15890	957	33	4		4	TESK2	1	45811759	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	357428	45811759	203438862	28	44568											
NSUN4	387338	broad.mit.edu	37	chr1	46826611	46826611	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagaatcttatggctggaGatctgcctagaggagacaga	12	7	2	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46826611	T	T	46826611	1	4	32	0	1	0	0	0	0	0	0	0	10775	957	33	3		3	NSUN4	1	46826611	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1014852	46826611	202424010	29	44569											
C8A	731	broad.mit.edu	37	chr1	57351623	57351623	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcattttcacaagaatcttCacaaaggtgcagactgcaca	6	10	4	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57351623	T	T	57351623	2	4	32	1	0	0	0	0	0	0	0	1	2441	825	29	4		4	C8A	1	57351623	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	10525012	57351623	191898998	30	44570											
HOOK1	51361	broad.mit.edu	37	chr1	60331647	60331647	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggagaaagccagaaatgtGagtgacttatctttcggagc	12	6	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60331647	C	C	60331647	1	2	32	0	1	0	0	0	0	0	0	0	7349	1305	45	4		4	HOOK1	1	60331647	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2980024	60331647	188918974	31	44571											
DNAJC6	9829	broad.mit.edu	37	chr1	65855119	65855119	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccaggaacatcaagatacGctggccttaggaggtatgag	12	9	1	2	rs148673423		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65855119	A	A	65855119	2	1	32	1	0	0	0	0	0	0	0	1	4693	1074	38	4		4	DNAJC6	1	65855119	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	5523472	65855119	183395502	32	44572											
LEPR	3953	broad.mit.edu	37	chr1	66067113	66067113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaattctgacaagtgttGggtctaatgtttcttttcac	7	7	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66067113	T	T	66067113	3	4	32	1	0	0	0	0	1	0	0	0	8800	1348	47	2	1059	2	LEPR	1	66067113	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	211994	66067113	183183508	33	44573											
IL12RB2	3595	broad.mit.edu	37	chr1	67787401	67787401	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgctttcactattccagaCgtaacaagttaatcctgtac	6	11	1	1	rs140166116		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67787401	G	G	67787401	3	3	32	1	0	0	0	0	1	0	0	0	7697	536	19	4	199	4	IL12RB2	1	67787401	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1720288	67787401	181463220	34	44574											
LRRC7	57554	broad.mit.edu	37	chr1	70503915	70503915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatgagtgatactttcaCtgacaactggactgatggct	10	10	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70503915	A	A	70503915	3	1	32	1	0	0	0	0	1	0	0	0	9107	565	20	3	2368	3	LRRC7	1	70503915	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2716514	70503915	178746706	35	44575											
TNNI3K	51086	broad.mit.edu	37	chr1	75009675	75009675	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagcagctgacagcattcGgcgtatacctaaggagagtt	12	9	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75009675	A	A	75009675	1	1	32	0	1	0	0	0	0	0	0	0	16452	1131	39	4		4	TNNI3K	1	75009675	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	4505760	75009675	174240946	36	44576											
LHX8	431707	broad.mit.edu	37	chr1	75596466	75596466	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caatctcctaaagtctttttCcagactaatatttataatgg	4	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75596466	A	A	75596466	1	1	32	0	1	0	0	0	0	0	0	0	8848	870	30	3		3	LHX8	1	75596466	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	586791	75596466	173654155	37	44577											
RABGGTB	5876	broad.mit.edu	37	chr1	76253334	76253335	+	Intron	INS	-	T	T													aagtttattttaaagaagtgINStgacagtcataagcagtgag							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76253335	T	T	76253334	6	5	32	0	1	1	1	0	0	0	0	0	13076	1392	48	0		0	RABGGTB	1	76253334	Intron	INS	-	TCGA-05-5428-01A-01D-1625-08	656868	76253334	172997287	38	44578											
AK5	26289	broad.mit.edu	37	chr1	77752576	77752576	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaaattaaagaaaaaacaAaggtgggtttaaaagatatt	7	1	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77752576	C	C	77752576	1	2	32	0	1	0	0	0	0	0	0	0	443	29	1	5		5	AK5	1	77752576	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	1499242	77752576	171498045	39	44579											
GBP1	2633	broad.mit.edu	37	chr1	89524016	89524016	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttcaggctggatggtctCttttccaagtattcaactct	7	11	5	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89524016	G	G	89524016	1	3	32	0	1	0	0	0	0	0	0	0	6335	928	32	4		4	GBP1	1	89524016	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	11771440	89524016	159726605	40	44580											
GBP5	115362	broad.mit.edu	37	chr1	89733265	89733265	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattcccagatgagcgataTttaaaaataggctcttgtca	9	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89733265	C	C	89733265	1	2	32	0	1	0	0	0	0	0	0	0	6339	1508	52	5		5	GBP5	1	89733265	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	209249	89733265	159517356	41	44581											
SNX7	51375	broad.mit.edu	37	chr1	99156718	99156718	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaagggaaaactggaagaaGcacaccccactctgattatt	9	9	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99156718	C	C	99156718	3	2	32	1	0	0	0	0	1	0	0	0	15021	971	34	4	461	4	SNX7	1	99156718	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	9423453	99156718	150093903	42	44582											
OLFM3	118427	broad.mit.edu	37	chr1	102312370	102312370	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactaaatgcacttacttctCaagatggccaaacccaccgc	5	15	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102312370	T	T	102312370	1	4	32	0	1	0	0	0	0	0	0	0	10949	841	29	4		4	OLFM3	1	102312370	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3155652	102312370	146938251	43	44583											
WDR47	22911	broad.mit.edu	37	chr1	109533963	109533963	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgaagagctgtgggagtaGaaattcaagtaaagtttact	11	4	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109533963	C	C	109533963	1	2	32	0	1	0	0	0	0	0	0	0	17427	957	33	4		4	WDR47	1	109533963	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	7221593	109533963	139716658	44	44584											
CELSR2	1952	broad.mit.edu	37	chr1	109815340	109815340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcctggaaggtcaagaCcagcagcatggtgaggacag	14	9	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109815340	A	A	109815340	3	1	32	1	0	0	0	0	1	0	0	0	3252	506	18	3	8251	3	CELSR2	1	109815340	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	281377	109815340	139435281	45	44585											
GSTM2	2946	broad.mit.edu	37	chr1	110224424	110224424	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacactattttcttttctctGaggtagcattcctgatgttt	6	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110224424	T	T	110224424	1	4	32	0	1	0	0	0	0	0	0	0	6904	1305	45	3		3	GSTM2	1	110224424	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	409084	110224424	139026197	46	44586											
KCNC4	3749	broad.mit.edu	37	chr1	110766518	110766518	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgatcgagaggaaacgGgcaggtgagattaggggttg	19	3	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110766518	T	T	110766518	2	4	32	1	0	0	0	0	0	0	0	1	8087	1219	43	2		2	KCNC4	1	110766518	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	542094	110766518	138484103	47	44587											
HIPK1	204851	broad.mit.edu	37	chr1	114499818	114499818	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgatacagtgagtcagatCaagagtcccttcactacaca	7	10	3	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114499818	G	G	114499818	3	3	32	1	0	0	0	0	1	0	0	0	7183	816	29	4	1705	4	HIPK1	1	114499818	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3733300	114499818	134750803	48	44588											
TARS2	80222	broad.mit.edu	37	chr1	150461688	150461689	+	Intron	DNP	AG	CT	CT													ttgggagggagacctaccacAgactgtcttgactatttctg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	150461689	CT	CT	150461688	1	2	32	0	1	0	0	0	0	0	0	0	15679	203	7	5		5	TARS2	1	150461688	Intron	DNP	AG	TCGA-05-5428-01A-01D-1625-08	35961870	150461688	98788933	49	44589											
GOLPH3L	55204	broad.mit.edu	37	chr1	150635917	150635917	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacaaaaccaggagcttccTataactctttggactatgga	8	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150635917	A	A	150635917	1	1	32	0	1	0	0	0	0	0	0	0	6633	1537	53	5		5	GOLPH3L	1	150635917	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	174229	150635917	98614704	50	44590											
FLG	2312	broad.mit.edu	37	chr1	152282032	152282032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccctgtgcgtccatgggcgGactcagactgttcatgagtg	14	11	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152282032	T	T	152282032	3	4	32	1	0	0	0	0	1	0	0	0	5979	1174	41	3	6859	3	FLG	1	152282032	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1646115	152282032	96968589	51	44591											
PAQR6	79957	broad.mit.edu	37	chr1	156214604	156214604	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaggcaggtgggaggcgaaGaggaagccagtgagcagcgc	19	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156214604	C	C	156214604	2	2	32	1	0	0	0	0	0	0	0	1	11533	929	33	4		4	PAQR6	1	156214604	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	3932572	156214604	93036017	52	44592											
RHBG	57127	broad.mit.edu	37	chr1	156347342	156347342	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcccctgcccatgggcccCggatctagccctgtccttca	10	18	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156347342	T	T	156347342	1	4	32	0	1	0	0	0	0	0	0	0	13433	667	23	4		4	RHBG	1	156347342	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	132738	156347342	92903279	53	44593											
BCAN	63827	broad.mit.edu	37	chr1	156622224	156622224	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcccgggccctgaggcctcTctccccactgagccagcagc	11	19	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156622224	A	A	156622224	2	1	32	1	0	0	0	0	0	0	0	1	1350	1538	54	5		5	BCAN	1	156622224	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	274882	156622224	92628397	54	44594											
FCRL4	83417	broad.mit.edu	37	chr1	157557276	157557276	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctggaggaagctgtgtttCacagctcaggtttacagaat	11	8	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157557276	G	G	157557276	3	3	32	1	0	0	0	0	1	0	0	0	5854	835	29	4	942	4	FCRL4	1	157557276	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	935052	157557276	91693345	55	44595											
FCRL3	115352	broad.mit.edu	37	chr1	157666120	157666121	+	Intron	DNP	GG	TT	TT													cattagacacagggactcctGggggaacacaagatggcatg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	157666121	TT	TT	157666120	1	4	32	0	1	0	0	0	0	0	0	0	5853	1363	47	2		2	FCRL3	1	157666120	Intron	DNP	GG	TCGA-05-5428-01A-01D-1625-08	108844	157666120	91584501	56	44596											
KIRREL	55243	broad.mit.edu	37	chr1	158059508	158059508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtcttcttgcttgcagGgccccccatcatctccagtg	9	14	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158059508	T	T	158059508	3	4	32	1	0	0	0	0	1	0	0	0	8395	1246	43	2	1210	2	KIRREL	1	158059508	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	393388	158059508	91191113	57	44597											
OR10R2	343406	broad.mit.edu	37	chr1	158450321	158450321	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagatgttaacgaatttgtGatattcatttgtggagttct	9	4	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158450321	C	C	158450321	2	2	32	1	0	0	0	0	0	0	0	1	11011	1277	45	4		4	OR10R2	1	158450321	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	390813	158450321	90800300	58	44598											
SPTA1	6708	broad.mit.edu	37	chr1	158596907	158596907	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttcaaatatataaccaaGtgtgaccgtcttagtttgtg	7	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158596907	T	T	158596907	1	4	32	0	1	0	0	0	0	0	0	0	15234	1044	36	3		3	SPTA1	1	158596907	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	146586	158596907	90653714	59	44599											
SPTA1	6708	broad.mit.edu	37	chr1	158606394	158606394	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaggggttgctataggatGatttctatattttcagatct	9	5	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158606394	A	A	158606394	1	1	32	0	1	0	0	0	0	0	0	0	15234	1305	45	4		4	SPTA1	1	158606394	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	9487	158606394	90644227	60	44600											
SPTA1	6708	broad.mit.edu	37	chr1	158627313	158627313	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttagtattatctacaataGgttccttctctctgatccat	5	9	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158627313	A	A	158627313	3	1	32	1	0	0	0	0	1	0	0	0	15234	1000	35	4	4636	4	SPTA1	1	158627313	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	20919	158627313	90623308	61	44601											
CADM3	57863	broad.mit.edu	37	chr1	159170655	159170655	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagacgcggacacggccatCatcaatgcagaaggcgggca	13	13	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159170655	T	T	159170655	2	4	32	1	0	0	0	0	0	0	0	1	2594	816	29	4		4	CADM3	1	159170655	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	543342	159170655	90079966	62	44602											
ATP1A2	477	broad.mit.edu	37	chr1	160106720	160106720	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcggaaggtggtggagttCacgtgccacacggcattctt	14	10	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160106720	T	T	160106720	2	4	32	1	0	0	0	0	0	0	0	1	1133	825	29	4		4	ATP1A2	1	160106720	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	936065	160106720	89143901	63	44603											
USP21	27005	broad.mit.edu	37	chr1	161130616	161130616	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtctgcctgatgaacgGctcaagaaactggagctggg	14	10	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161130616	T	T	161130616	2	4	32	1	0	0	0	0	0	0	0	1	17179	1190	42	3		3	USP21	1	161130616	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1023896	161130616	88120005	64	44604											
TMCO1	54499	broad.mit.edu	37	chr1	165737916	165737916	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctgagaaatacccgctctCaccctctgcgagcagagccg	10	15	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165737916	T	T	165737916	1	4	32	0	1	0	0	0	0	0	0	0	16118	841	29	4		4	TMCO1	1	165737916	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4607300	165737916	83512705	65	44605											
POU2F1	5451	broad.mit.edu	37	chr1	167334832	167334832	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttctgctcaaccatcagtGagagtgaaagatagaggcgt	12	7	3	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167334832	A	A	167334832	1	1	32	0	1	0	0	0	0	0	0	0	12367	1305	45	4		4	POU2F1	1	167334832	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1596916	167334832	81915789	66	44606											
ATP1B1	481	broad.mit.edu	37	chr1	169099285	169099286	+	RNA	INS	-	G	G													ttggagacttacccagtgatINSgaagtataacccaaatgtcc							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169099286	G	G	169099285	6	5	32	0	1	1	1	0	0	0	0	0	1136	1464	51	0		0	ATP1B1	1	169099285	RNA	INS	-	TCGA-05-5428-01A-01D-1625-08	1764453	169099285	80151336	67	44607											
FMO1	2326	broad.mit.edu	37	chr1	171244388	171244388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattaattatgtttattctGtgttctagaacttttaaaat	4	3	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171244388	T	T	171244388	1	4	32	0	1	0	0	0	0	0	0	0	6012	1392	48	3		3	FMO1	1	171244388	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2145103	171244388	78006233	68	44608											
C1orf105	92346	broad.mit.edu	37	chr1	172425554	172425554	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtctctctttcccctcaGgccaggaggaaccagtgtga	10	13	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172425554	T	T	172425554	5	4	32	1	0	0	0	0	0	0	1	0	1999	1014	35	2	212	2	C1orf105	1	172425554	Splice_Site	SNP	G	TCGA-05-5428-01A-01D-1625-08	1181166	172425554	76825067	69	44609											
TNR	7143	broad.mit.edu	37	chr1	175372452	175372452	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttccccgaacagtccccaGggcacctcagttccctgcag	8	19	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372452	A	A	175372452	3	1	32	1	0	0	0	0	1	0	0	0	16461	1000	35	4	3356	4	TNR	1	175372452	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2946898	175372452	73878169	70	44610											
PAPPA2	60676	broad.mit.edu	37	chr1	176762727	176762727	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccccattgtgtgtaatcccCcccagtgaccccgtgatgct	8	16	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176762727	G	G	176762727	2	3	32	1	0	0	0	0	0	0	0	1	11527	610	22	4		4	PAPPA2	1	176762727	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1390275	176762727	72487894	71	44611											
ASTN1	460	broad.mit.edu	37	chr1	176853381	176853381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattgccctgggatactggGgacctggagcaaagccatga	14	10	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176853381	T	T	176853381	1	4	32	0	1	0	0	0	0	0	0	0	1068	1247	43	2		2	ASTN1	1	176853381	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	90654	176853381	72397240	72	44612											
NPHS2	7827	broad.mit.edu	37	chr1	179533764	179533764	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaacagaagtgagaatggGcatggtgtggccagtgagag	17	4	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179533764	C	C	179533764	1	2	32	0	1	0	0	0	0	0	0	0	10678	1218	42	4		4	NPHS2	1	179533764	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2680383	179533764	69716857	73	44613											
STX6	10228	broad.mit.edu	37	chr1	180962673	180962673	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttattactttttaaaaagaaGaccgcatttcttggctttat	5	6	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180962673	C	C	180962673	1	2	32	0	1	0	0	0	0	0	0	0	15467	957	33	4		4	STX6	1	180962673	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1428909	180962673	68287948	74	44614											
FAM5C	339479	broad.mit.edu	37	chr1	190068088	190068088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcgggtgcggttgtctGgtgcgcatgtcaggcaggca	18	10	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190068088	T	T	190068088	3	4	32	1	0	0	0	0	1	0	0	0	5645	1348	47	2	943	2	FAM5C	1	190068088	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	9105415	190068088	59182533	75	44615											
PPFIA4	8497	broad.mit.edu	37	chr1	203026012	203026012	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatcaagtcgtccattggcCgcctgtttgggaagaaggag	14	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203026012	G	G	203026012	3	3	32	1	0	0	0	0	1	0	0	0	12408	652	23	4	845	4	PPFIA4	1	203026012	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	12957924	203026012	46224609	76	44616											
NFASC	23114	broad.mit.edu	37	chr1	204924236	204924236	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacacaggctctgcagagAgaggctgcttgggcttattt	13	8	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204924236	T	T	204924236	1	4	32	0	1	0	0	0	0	0	0	0	10454	319	11	5		5	NFASC	1	204924236	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	1898224	204924236	44326385	77	44617											
CR1	1378	broad.mit.edu	37	chr1	207697445	207697445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcagggggagggatgtGtgctgagcagggtcgaggag	21	4	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207697445	T	T	207697445	1	4	32	0	1	0	0	0	0	0	0	0	3872	1392	48	3		3	CR1	1	207697445	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2773209	207697445	41553176	78	44618											
PROX1	5629	broad.mit.edu	37	chr1	214171068	214171068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagatttgcagtcaatgGggaaaaccacaatttccaca	9	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214171068	T	T	214171068	3	4	32	1	0	0	0	0	1	0	0	0	12666	1232	43	2	1192	2	PROX1	1	214171068	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	6473623	214171068	35079553	79	44619											
USH2A	7399	broad.mit.edu	37	chr1	216061725	216061725	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagagtcaatccagggtaCattcctaagtctgcaaagga	9	10	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216061725	T	T	216061725	1	4	32	0	1	0	0	0	0	0	0	0	17162	493	17	4		4	USH2A	1	216061725	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1890657	216061725	33188896	80	44620											
BPNT1	10380	broad.mit.edu	37	chr1	220233191	220233191	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaataattgaaagtcaTgaaaagattgaggtacagat	10	2	1	6			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220233191	A	A	220233191	1	1	32	0	1	0	0	0	0	0	0	0	1503	1479	51	5		5	BPNT1	1	220233191	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	4171466	220233191	29017430	81	44621											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220383684	220383684	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagaggagagaaactgcttCaaaataatgccactgttact	8	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220383684	T	T	220383684	1	4	32	0	1	0	0	0	0	0	0	0	13044	841	29	4		4	RAB3GAP2	1	220383684	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	150493	220383684	28866937	82	44622											
LEFTY2	7044	broad.mit.edu	37	chr1	226127791	226127791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagctggcagccaggccaGgagacaccggccctgttcta	13	14	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226127791	T	T	226127791	1	4	32	0	1	0	0	0	0	0	0	0	8788	1015	35	2		2	LEFTY2	1	226127791	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	5744107	226127791	23122830	83	44623											
ITPKB	3707	broad.mit.edu	37	chr1	226923450	226923450	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggtgcccatgtctgtaatGatgacagcaggtatgttgct	13	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226923450	T	T	226923450	2	4	32	1	0	0	0	0	0	0	0	1	7988	1280	45	3		3	ITPKB	1	226923450	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	795659	226923450	22327171	84	44624											
OBSCN	84033	broad.mit.edu	37	chr1	228566574	228566574	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaacgcacagccgggcgAgaagtcttccgtctcgttgc	11	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228566574	G	G	228566574	1	3	32	0	1	0	0	0	0	0	0	0	10907	318	11	5		5	OBSCN	1	228566574	3'UTR	SNP	A	TCGA-05-5428-01A-01D-1625-08	1643124	228566574	20684047	85	44625											
TARBP1	6894	broad.mit.edu	37	chr1	234529116	234529116	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttccacccacctccactaGaggaagccactgttctgcag	7	16	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234529116	C	C	234529116	3	2	32	1	0	0	0	0	1	0	0	0	15674	933	33	4	325	4	TARBP1	1	234529116	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	5962542	234529116	14721505	86	44626											
ARID4B	51742	broad.mit.edu	37	chr1	235377133	235377133	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaaaggacctctccaccttCgacatcagaatctttaatac	5	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235377133	A	A	235377133	4	1	32	1	0	0	0	0	0	1	0	0	922	893	31	3	2178	3	ARID4B	1	235377133	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	848017	235377133	13873488	87	44627											
ARID4B	51742	broad.mit.edu	37	chr1	235418974	235418975	+	Splice_Site	DNP	CC	AA	AA													aaagaaaatttattttcttaCctacagtgtaccaactcgca							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	235418975	AA	AA	235418974	5	1	32	1	0	0	0	0	0	0	1	0	922	521	18	3	3743	3	ARID4B	1	235418974	Splice_Site	DNP	CC	TCGA-05-5428-01A-01D-1625-08	41841	235418974	13831647	88	44628											
LYST	1130	broad.mit.edu	37	chr1	235969806	235969806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggataagcttctttgaggCcagcataaaatttgctgaga	10	6	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235969806	A	A	235969806	3	1	32	1	0	0	0	0	1	0	0	0	9216	739	26	3	8967	3	LYST	1	235969806	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	550832	235969806	13280815	89	44629											
NID1	4811	broad.mit.edu	37	chr1	236208675	236208675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccataggaacatttttagGtaatgatctataatacacat	5	6	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236208675	A	A	236208675	1	1	32	0	1	0	0	0	0	0	0	0	10509	1276	44	4		4	NID1	1	236208675	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	238869	236208675	13041946	90	44630											
RYR2	6262	broad.mit.edu	37	chr1	237777328	237777328	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatcttactaccactctcctCccttctacagatctgttgac	3	15	4	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237777328	T	T	237777328	1	4	32	0	1	0	0	0	0	0	0	0	13880	870	30	4		4	RYR2	1	237777328	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1568653	237777328	11473293	91	44631											
RYR2	6262	broad.mit.edu	37	chr1	237802302	237802302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgtttacttatcttcccCattctactttaggggagagt	7	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237802302	A	A	237802302	1	1	32	0	1	0	0	0	0	0	0	0	13880	609	21	2		2	RYR2	1	237802302	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	24974	237802302	11448319	92	44632											
OR2G3	81469	broad.mit.edu	37	chr1	247769413	247769413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcaaccataggctggacCattttatttgcgaagtacca	10	9	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247769413	A	A	247769413	3	1	32	1	0	0	0	0	1	0	0	0	11093	594	21	2	528	2	OR2G3	1	247769413	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	9967111	247769413	1481208	93	44633											
OR2M5	127059	broad.mit.edu	37	chr1	248308469	248308469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcatgggagaatcagaCcttcaactctgacttcatcc	8	12	4	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308469	A	A	248308469	3	1	32	1	0	0	0	0	1	0	0	0	11107	507	18	3	22	3	OR2M5	1	248308469	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	539056	248308469	942152	94	44634											
OR2T6	254879	broad.mit.edu	37	chr1	248550931	248550931	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgaaaacaatgaaaccTtgaccagaggctttaccctc	7	10	0	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248550931	A	A	248550931	3	1	32	1	0	0	0	0	1	0	0	0	11123	1606	56	5	24	5	OR2T6	1	248550931	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	242462	248550931	699690	95	44635											
OR2T3	343173	broad.mit.edu	37	chr1	248637272	248637272	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacgctcatgtacctgtgCtgcatcctcatgcttctcgc	8	14	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248637272	A	A	248637272	4	1	32	1	0	0	0	0	0	1	0	0	11117	805	28	3	623	3	OR2T3	1	248637272	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	86341	248637272	613349	96	44636											
CMPK2	129607	broad.mit.edu	37	chr2	6991699	6991699	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgagcagcaggataaggtCaggtttgagcaggtcctctg	15	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6991699	G	G	6991699	3	3	32	1	0	0	0	0	1	0	0	0	3613	826	29	4	249	4	CMPK2	2	6991699	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08		6991699	236207674	97	44637											
ADAM17	6868	broad.mit.edu	37	chr2	9666271	9666271	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagttgtactctcttcccctCtgcccatgtatctgtagaag	7	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9666271	T	T	9666271	3	4	32	1	0	0	0	0	1	0	0	0	238	913	32	4	1808	4	ADAM17	2	9666271	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2674572	9666271	233533102	98	44638											
MATN3	4148	broad.mit.edu	37	chr2	20203042	20203042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgttccaagcacacaggggtCcagcgctgtgagaggaagtt	14	9	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20203042	A	A	20203042	3	1	32	1	0	0	0	0	1	0	0	0	9427	855	30	3	688	3	MATN3	2	20203042	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	10536771	20203042	222996331	99	44639											
IFT172	26160	broad.mit.edu	37	chr2	27684242	27684242	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgagcagctttggcaGggagcccagctttgaggtag	15	11	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27684242	C	C	27684242	3	2	32	1	0	0	0	0	1	0	0	0	7627	1000	35	4	3021	4	IFT172	2	27684242	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	7481200	27684242	215515131	100	44640											
C2orf16	84226	broad.mit.edu	37	chr2	27800697	27800697	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggaatctttagaggtgCccctgaagcaaacaagtcaa	11	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27800697	T	T	27800697	3	4	32	1	0	0	0	0	1	0	0	0	2179	739	26	4	1260	4	C2orf16	2	27800697	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	116455	27800697	215398676	101	44641											
CLIP4	79745	broad.mit.edu	37	chr2	29390370	29390371	+	Missense_Mutation	DNP	GA	TT	TT													attccctggataccctttcaGaaatttcttcaaataaacag							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	29390371	TT	TT	29390370	3	4	32	1	0	0	0	0	1	0	0	0	3567	943	33	3	1737	3	CLIP4	2	29390370	Missense_Mutation	DNP	GA	TCGA-05-5428-01A-01D-1625-08	1589673	29390370	213809003	102	44642											
LTBP1	4052	broad.mit.edu	37	chr2	33484716	33484716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtctttttttttcaacGctcaaagtgattttctatta	5	7	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33484716	T	T	33484716	1	4	32	0	1	0	0	0	0	0	0	0	9160	1102	38	3		3	LTBP1	2	33484716	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	4094346	33484716	209714657	103	44643											
PPM1B	5495	broad.mit.edu	37	chr2	44393939	44393939	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacatgtgcaagccagccacCgcgccatagccttaattgca	9	14	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44393939	T	T	44393939	1	4	32	0	1	0	0	0	0	0	0	0	12437	667	23	4		4	PPM1B	2	44393939	5'Flank	SNP	C	TCGA-05-5428-01A-01D-1625-08	10909223	44393939	198805434	104	44644											
CHAC2	494143	broad.mit.edu	37	chr2	53999058	53999058	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacagcctggaagagttgtGactcttgttgaagatcctgc	11	8	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53999058	A	A	53999058	2	1	32	1	0	0	0	0	0	0	0	1	3339	1277	45	4		4	CHAC2	2	53999058	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	9605119	53999058	189200315	105	44645											
BCL11A	53335	broad.mit.edu	37	chr2	60688324	60688324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccctcggcctcggccaGgtggccgcgcttatgcttct	14	15	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60688324	T	T	60688324	3	4	32	1	0	0	0	0	1	0	0	0	1368	991	35	2	894	2	BCL11A	2	60688324	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	6689266	60688324	182511049	106	44646											
PAPOLG	64895	broad.mit.edu	37	chr2	61014693	61014693	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggataatttttcggagagTagaaaatgcagaaagtgtca	12	3	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61014693	C	C	61014693	3	2	32	1	0	0	0	0	1	0	0	0	11525	1638	57	5	1392	5	PAPOLG	2	61014693	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	326369	61014693	182184680	107	44647											
OTX1	5013	broad.mit.edu	37	chr2	63281147	63281147	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgcgggtccacgtggccaCcaatgacccgcggcgccccc	12	19	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63281147	T	T	63281147	1	4	32	0	1	0	0	0	0	0	0	0	11414	522	18	4		4	OTX1	2	63281147	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2266454	63281147	179918226	108	44648											
SPRED2	200734	broad.mit.edu	37	chr2	65561824	65561824	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggaaagtaagtccaaacttCctattatcgaccttccagtg	7	10	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65561824	G	G	65561824	3	3	32	1	0	0	0	0	1	0	0	0	15211	854	30	4	984	4	SPRED2	2	65561824	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2280677	65561824	177637549	109	44649											
PROKR1	10887	broad.mit.edu	37	chr2	68873233	68873233	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtccgctacaagaaactgCgcaacctcaccaacctgctc	7	16	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68873233	T	T	68873233	3	4	32	1	0	0	0	0	1	0	0	0	12658	768	27	4	282	4	PROKR1	2	68873233	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3311409	68873233	174326140	110	44650											
GFPT1	2673	broad.mit.edu	37	chr2	69564888	69564888	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatgattagtaaaatgtgtGagttctataactgctaacaa	7	5	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69564888	A	A	69564888	1	1	32	0	1	0	0	0	0	0	0	0	6409	1305	45	4		4	GFPT1	2	69564888	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	691655	69564888	173634485	111	44651											
FBXO41	150726	broad.mit.edu	37	chr2	73492453	73492453	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagccatagcaggcccGgggcggggcgcatccaacgg	17	15	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73492453	T	T	73492453	2	4	32	1	0	0	0	0	0	0	0	1	5807	1103	39	1		1	FBXO41	2	73492453	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	3927565	73492453	169706920	112	44652											
REG3G	130120	broad.mit.edu	37	chr2	79253889	79253889	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacggatcagctgtcccaaaGgctccaaggcctatggctcc	10	15	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79253889	A	A	79253889	3	1	32	1	0	0	0	0	1	0	0	0	13321	1000	35	4	133	4	REG3G	2	79253889	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	5761436	79253889	163945484	113	44653											
REG3G	130120	broad.mit.edu	37	chr2	79253991	79253991	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggttggaggtgatagGggaaagtccatgcaggtctc	18	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79253991	A	A	79253991	1	1	32	0	1	0	0	0	0	0	0	0	13321	1247	43	4		4	REG3G	2	79253991	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	102	79253991	163945382	114	44654											
REG1B	5968	broad.mit.edu	37	chr2	79312775	79312775	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccatggtcactcaaaaatCaatagaataaccaggcctgt	8	10	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79312775	T	T	79312775	1	4	32	0	1	0	0	0	0	0	0	0	13319	841	29	4		4	REG1B	2	79312775	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	58784	79312775	163886598	115	44655											
REG3A	5068	broad.mit.edu	37	chr2	79385454	79385454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggatatactggcacctGtgtggggtcatggagcccaa	16	8	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385454	T	T	79385454	3	4	32	1	0	0	0	0	1	0	0	0	13320	1386	48	3	208	3	REG3A	2	79385454	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	72679	79385454	163813919	116	44656											
CTNNA2	1496	broad.mit.edu	37	chr2	80085218	80085218	+	Frame_Shift_Del	DEL	G	-	-													cgcggcaccatggtacgggcGgcaagggctttgctctccgc							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80085218	-	-	80085218	7	5	32	1	0	1	0	1	0	0	0	0	4047	1103	39	0	388	0	CTNNA2	2	80085218	Frame_Shift_Del	DEL	G	TCGA-05-5428-01A-01D-1625-08	699764	80085218	163114155	117	44657											
RMND5A	64795	broad.mit.edu	37	chr2	87243322	87243322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaattttacaacaccatagCaccttcctcctctggtctca	3	15	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87243322	A	A	87243322	1	1	32	0	1	0	0	0	0	0	0	0	13508	725	25	3		3	RMND5A	2	87243322	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	7158104	87243322	155956051	118	44658											
ANKRD23	200539	broad.mit.edu	37	chr2	97506548	97506548	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgggcattggggtccccTccgtctgtcaagtacttgtc	11	12	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97506548	G	G	97506548	2	3	32	1	0	0	0	0	0	0	0	1	652	1538	54	5		5	ANKRD23	2	97506548	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	10263226	97506548	145692825	119	44659											
RPL31	6160	broad.mit.edu	37	chr2	101622875	101622875	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagatcaaataaagttataaAattgccttcatgtttttgtt	5	5	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101622875	T	T	101622875	1	4	32	0	1	0	0	0	0	0	0	0	13692	29	1	5		5	RPL31	2	101622875	3'UTR	SNP	A	TCGA-05-5428-01A-01D-1625-08	4116327	101622875	141576498	120	44660											
IL1RL1	9173	broad.mit.edu	37	chr2	102955527	102955527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtattatgcagaaggctccCatcttctttcaccctgctcc	7	14	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102955527	A	A	102955527	1	1	32	0	1	0	0	0	0	0	0	0	7733	609	21	2		2	IL1RL1	2	102955527	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1332652	102955527	140243846	121	44661											
RGPD4	285190	broad.mit.edu	37	chr2	108488020	108488020	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaacttgtagatactggcaGagctgccaagttaatacaga	9	7	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108488020	A	A	108488020	3	1	32	1	0	0	0	0	1	0	0	0	13396	942	33	4	3638	4	RGPD4	2	108488020	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	5532493	108488020	134711353	122	44662											
RGPD4	285190	broad.mit.edu	37	chr2	108492794	108492794	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctcgtgatccacccgcCtcggcctcccaaagtgctgg	10	17	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108492794	A	A	108492794	1	1	32	0	1	0	0	0	0	0	0	0	13396	696	24	2		2	RGPD4	2	108492794	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4774	108492794	134706579	123	44663											
NPHP1	4867	broad.mit.edu	37	chr2	110927765	110927765	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggagagactgaggcggagAgggagctgagtcatgtatgt	18	5	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110927765	T	T	110927765	1	4	32	0	1	0	0	0	0	0	0	0	10674	319	11	5		5	NPHP1	2	110927765	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	2434971	110927765	132271608	124	44664											
POTEE	445582	broad.mit.edu	37	chr2	132010529	132010529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgaagaaatgaagaagcaCggaagtactcatgtcggatt	11	6	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132010529	A	A	132010529	3	1	32	1	0	0	0	0	1	0	0	0	12360	535	19	3	1685	3	POTEE	2	132010529	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	21082764	132010529	111188844	125	44665											
ZRANB3	84083	broad.mit.edu	37	chr2	136110948	136110948	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctattggtgatattgcattCtaaaacatgaatatatacca	5	6	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136110948	A	A	136110948	1	1	32	0	1	0	0	0	0	0	0	0	18353	928	32	3		3	ZRANB3	2	136110948	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4100419	136110948	107088425	126	44666											
LCT	3938	broad.mit.edu	37	chr2	136570530	136570530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaccaagtgagccaccttGtgaaaaagtaagaaggaaat	11	6	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136570530	T	T	136570530	1	4	32	0	1	0	0	0	0	0	0	0	8765	1392	48	3		3	LCT	2	136570530	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	459582	136570530	106628843	127	44667											
LRP1B	53353	broad.mit.edu	37	chr2	141272152	141272152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaattagcaaattttgtGtatgctataaaatgatagag	7	2	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141272152	T	T	141272152	1	4	32	0	1	0	0	0	0	0	0	0	9042	1392	48	3		3	LRP1B	2	141272152	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	4701622	141272152	101927221	128	44668											
KCNJ3	3760	broad.mit.edu	37	chr2	155555206	155555206	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctttcctcccccgccccCacctccttattggtgctagt	5	21	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155555206	G	G	155555206	1	3	32	0	1	0	0	0	0	0	0	0	8122	609	21	4		4	KCNJ3	2	155555206	5'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	14283054	155555206	87644167	129	44669											
SLC38A11	151258	broad.mit.edu	37	chr2	165809379	165809379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaatttctgcatataataGgtaaagtcaatttatatact	4	5	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165809379	T	T	165809379	1	4	32	0	1	0	0	0	0	0	0	0	14717	1015	35	2		2	SLC38A11	2	165809379	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	10254173	165809379	77389994	130	44670											
SCN7A	6332	broad.mit.edu	37	chr2	167262631	167262631	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtcttgtttttcttcttaGaagcaatatttaaaaactcc	5	7	3	1	rs149649737	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167262631	C	C	167262631	3	2	32	1	0	0	0	0	1	0	0	0	14036	942	33	4	544	4	SCN7A	2	167262631	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1453252	167262631	75936742	131	44671											
XIRP2	129446	broad.mit.edu	37	chr2	168106534	168106534	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacacaaatacagaccgctGaaagtaaagctgaacataaa	6	8	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168106534	A	A	168106534	3	1	32	1	0	0	0	0	1	0	0	0	17557	1291	45	4	8662	4	XIRP2	2	168106534	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	843903	168106534	75092839	132	44672											
LRP2	4036	broad.mit.edu	37	chr2	170002194	170002194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcttccagcaatatagCcattattttgaaataagatt	5	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170002194	A	A	170002194	1	1	32	0	1	0	0	0	0	0	0	0	9043	754	26	3		3	LRP2	2	170002194	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1895660	170002194	73197179	133	44673											
KBTBD10	10324	broad.mit.edu	37	chr2	170359555	170359555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtatttgcagttctcatGgtacatttaatattgtctct	6	7	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170359555	T	T	170359555	1	4	32	0	1	0	0	0	0	0	0	0	8060	1363	47	2		2	KBTBD10	2	170359555	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	357361	170359555	72839818	134	44674											
TTN	7273	broad.mit.edu	37	chr2	179545114	179545114	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaggccacccagccaaTgcttgttttgctgtacttta	8	10	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179545114	A	A	179545114	1	1	32	0	1	0	0	0	0	0	0	0	16861	1479	51	5		5	TTN	2	179545114	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	9185559	179545114	63654259	135	44675											
ZNF804A	91752	broad.mit.edu	37	chr2	185803401	185803401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagtccttatgttctaCctctgtaaccactatccatc	5	14	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803401	A	A	185803401	3	1	32	1	0	0	0	0	1	0	0	0	18299	507	18	3	3292	3	ZNF804A	2	185803401	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	6258287	185803401	57395972	136	44676											
CALCRL	10203	broad.mit.edu	37	chr2	188245253	188245253	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgtccatgttctgttgcTtgctggatgtctaaaccagt	9	8	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188245253	A	A	188245253	3	1	32	1	0	0	0	0	1	0	0	0	2606	1609	56	5	1072	5	CALCRL	2	188245253	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	2441852	188245253	54954120	137	44677											
RFTN2	130132	broad.mit.edu	37	chr2	198496054	198496054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatacaaacaagcactcagCttaatcaaatgtcaataata	4	9	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198496054	A	A	198496054	1	1	32	0	1	0	0	0	0	0	0	0	13367	812	28	3		3	RFTN2	2	198496054	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	10250801	198496054	44703319	138	44678											
CPS1	1373	broad.mit.edu	37	chr2	211512694	211512694	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcacaagccccctgcagatCgacagggctgaggatcgctc	13	14	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211512694	A	A	211512694	2	1	32	1	0	0	0	0	0	0	0	1	3855	874	31	3		3	CPS1	2	211512694	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	13016640	211512694	31686679	139	44679											
IGFBP2	3485	broad.mit.edu	37	chr2	217525440	217525440	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcactgagcagcaccggcaGatgggcaagggtggcaagca	16	10	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	217525440	C	C	217525440	3	2	32	1	0	0	0	0	1	0	0	0	7649	933	33	4	609	4	IGFBP2	2	217525440	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	6012746	217525440	25673933	140	44680											
RNF25	64320	broad.mit.edu	37	chr2	219529494	219529494	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgaagtatcggtttcgctCagcctcaaggtcaatgattc	10	9	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219529494	A	A	219529494	4	1	32	1	0	0	0	0	0	1	0	0	13596	835	29	3	618	3	RNF25	2	219529494	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2004054	219529494	23669879	141	44681											
TTLL4	9654	broad.mit.edu	37	chr2	219614060	219614060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttggttttgacatcatGctagacgaaaacctcaagcc	7	11	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219614060	T	T	219614060	3	4	32	1	0	0	0	0	1	0	0	0	16855	1319	46	3	2731	3	TTLL4	2	219614060	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	84566	219614060	23585313	142	44682											
CCDC108	255101	broad.mit.edu	37	chr2	219870197	219870197	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaccaggagctgcttcttCtgcttggaaacagggcccca	10	13	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219870197	T	T	219870197	2	4	32	1	0	0	0	0	0	0	0	1	2769	912	32	4		4	CCDC108	2	219870197	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	256137	219870197	23329176	143	44683											
SPEG	10290	broad.mit.edu	37	chr2	220333758	220333758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagagccccggacagccgCctcaggccccaggtaccacc	11	18	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220333758	A	A	220333758	3	1	32	1	0	0	0	0	1	0	0	0	15154	739	26	3	3537	3	SPEG	2	220333758	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	463561	220333758	22865615	144	44684											
SCG2	7857	broad.mit.edu	37	chr2	224462309	224462309	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagggaaccttttgctcacCggggccagcttgtcagtctc	11	13	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224462309	T	T	224462309	2	4	32	1	0	0	0	0	0	0	0	1	14003	639	23	4		4	SCG2	2	224462309	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	4128551	224462309	18737064	145	44685											
DOCK10	55619	broad.mit.edu	37	chr2	225750595	225750595	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatagaaattagaattattCtaattccttcaggagtgcta	6	6	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225750595	G	G	225750595	1	3	32	0	1	0	0	0	0	0	0	0	4725	928	32	4		4	DOCK10	2	225750595	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1288286	225750595	17448778	146	44686											
SP140L	93349	broad.mit.edu	37	chr2	231267474	231267474	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtatctaatgacactaatgAtaaggaacatcgtttttgtc	8	6	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231267474	T	T	231267474	1	4	32	0	1	0	0	0	0	0	0	0	15077	348	12	5		5	SP140L	2	231267474	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	5516879	231267474	11931899	147	44687											
NMUR1	10316	broad.mit.edu	37	chr2	232389976	232389976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgaggctatagagcacGgggttggccgccgagcccag	16	11	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232389976	T	T	232389976	2	4	32	1	0	0	0	0	0	0	0	1	10601	1103	39	1		1	NMUR1	2	232389976	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1122502	232389976	10809397	148	44688											
DIS3L2	129563	broad.mit.edu	37	chr2	233195547	233195547	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacactagccccagacctgtGacctccacgtgcaagcacag	8	17	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233195547	A	A	233195547	1	1	32	0	1	0	0	0	0	0	0	0	4577	1305	45	4		4	DIS3L2	2	233195547	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	805571	233195547	10003826	149	44689											
ANKMY1	51281	broad.mit.edu	37	chr2	241421603	241421603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagacacacttactgcCcctgctccttcacatccagg	6	18	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241421603	A	A	241421603	3	1	32	1	0	0	0	0	1	0	0	0	634	623	22	2	222	2	ANKMY1	2	241421603	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	8226056	241421603	1777770	150	44690											
ANO7	50636	broad.mit.edu	37	chr2	242142823	242142824	+	Frame_Shift_Del	DEL	GC	-	-													aagtccttttccagcactggGcgcgctggggcaagtggaac							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	242142824	-	-	242142823	7	5	32	1	0	1	0	1	0	0	0	0	702	1203	42	0	1067	0	ANO7	2	242142823	Frame_Shift_Del	DEL	GC	TCGA-05-5428-01A-01D-1625-08	721220	242142823	1056550	151	44691											
D2HGDH	728294	broad.mit.edu	37	chr2	242690869	242690869	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagccttgtcttgggatgCctggaacggtcattggtgca	13	10	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242690869	G	G	242690869	1	3	32	0	1	0	0	0	0	0	0	0	4246	754	26	4		4	D2HGDH	2	242690869	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	548046	242690869	508504	152	44692											
NEU4	129807	broad.mit.edu	37	chr2	242757466	242757466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacacctaccgcgtggacCgccgagagtgttttggcaag	12	13	0	1	rs139467778		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242757466	A	A	242757466	3	1	32	1	0	0	0	0	1	0	0	0	10439	652	23	1	600	1	NEU4	2	242757466	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	66597	242757466	441907	153	44693											
CNTN6	27255	broad.mit.edu	37	chr3	1269653	1269653	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctggggacaattctgagtCggaaggcaaagctccaattt	11	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1269653	T	T	1269653	3	4	32	1	0	0	0	0	1	0	0	0	3677	875	31	4	344	4	CNTN6	3	1269653	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08		1269653	196752777	154	44694											
CNTN4	152330	broad.mit.edu	37	chr3	3085352	3085352	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaattgggatcaagtgaaGgccctggataatgagtcgga	14	6	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3085352	C	C	3085352	3	2	32	1	0	0	0	0	1	0	0	0	3675	991	35	4	2853	4	CNTN4	3	3085352	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1815699	3085352	194937078	155	44695											
KCNH8	131096	broad.mit.edu	37	chr3	19436748	19436748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggatggcgtgtatctgGtacgtcattggaaaaatgga	13	6	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19436748	T	T	19436748	3	4	32	1	0	0	0	0	1	0	0	0	8108	1270	44	3	1148	3	KCNH8	3	19436748	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	16351396	19436748	178585682	156	44696											
SGOL1	151648	broad.mit.edu	37	chr3	20225228	20225228	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctttcactttggatttttCattttccaaagctaaaacta	3	8	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20225228	T	T	20225228	3	4	32	1	0	0	0	0	1	0	0	0	14329	835	29	4	1522	4	SGOL1	3	20225228	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	788480	20225228	177797202	157	44697											
GLB1	2720	broad.mit.edu	37	chr3	33075833	33075833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgccatcagctaggcccCtgctgttgtacctggaagcc	10	14	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33075833	A	A	33075833	1	1	32	0	1	0	0	0	0	0	0	0	6491	696	24	2		2	GLB1	3	33075833	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	12850605	33075833	164946597	158	44698											
DCLK3	85443	broad.mit.edu	37	chr3	36779860	36779860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctggctcccatttcccCctcccccacttcttctgggt	7	18	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779860	A	A	36779860	3	1	32	1	0	0	0	0	1	0	0	0	4326	622	22	2	1671	2	DCLK3	3	36779860	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3704027	36779860	161242570	159	44699											
MLH1	4292	broad.mit.edu	37	chr3	37089041	37089041	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctttgaccttgccatgcTtgccttagatagtccagaga	9	11	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37089041	G	G	37089041	3	3	32	1	0	0	0	0	1	0	0	0	9710	1609	56	5	1825	5	MLH1	3	37089041	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	309181	37089041	160933389	160	44700											
SCN11A	11280	broad.mit.edu	37	chr3	38950598	38950598	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatgccatggtaacaacagCcagggttaagttaatcaggt	10	7	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38950598	G	G	38950598	3	3	32	1	0	0	0	0	1	0	0	0	14026	739	26	4	4258	4	SCN11A	3	38950598	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1861557	38950598	159071832	161	44701											
CCK	885	broad.mit.edu	37	chr3	42299711	42299711	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggttcttaacgatggacattCgtccagaaggagctacaagg	12	8	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42299711	T	T	42299711	3	4	32	1	0	0	0	0	1	0	0	0	2907	884	31	4	124	4	CCK	3	42299711	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3349113	42299711	155722719	162	44702											
KIF15	56992	broad.mit.edu	37	chr3	44894107	44894107	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaatgcaaaaaaaaaccaCttcctgtaagaattagagcc	5	8	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44894107	T	T	44894107	1	4	32	0	1	0	0	0	0	0	0	0	8347	580	20	4		4	KIF15	3	44894107	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2594396	44894107	153128323	163	44703											
CDCP1	64866	broad.mit.edu	37	chr3	45127662	45127662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattctttagggttctgaCcatgtctcccccaaatccct	7	13	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45127662	A	A	45127662	1	1	32	0	1	0	0	0	0	0	0	0	3123	522	18	3		3	CDCP1	3	45127662	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	233555	45127662	152894768	164	44704											
PRSS42	339906	broad.mit.edu	37	chr3	46874472	46874472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatccggtcacccagcacCtggtcctaccttccacctgg	7	20	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46874472	A	A	46874472	3	1	32	1	0	0	0	0	1	0	0	0	12734	681	24	2	296	2	PRSS42	3	46874472	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1746810	46874472	151147958	165	44705											
NBEAL2	23218	broad.mit.edu	37	chr3	47044777	47044777	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaccagctcggcgaggacGagctggctgagctggagacc	17	11	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47044777	A	A	47044777	3	1	32	1	0	0	0	0	1	0	0	0	10283	1059	37	4	5836	4	NBEAL2	3	47044777	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	170305	47044777	150977653	166	44706											
DHX30	22907	broad.mit.edu	37	chr3	47883282	47883282	+	Intron	SNP	G	T	T													cgtttacttggtcatgtctgGtgttccctaaaggcaggttt							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47883282	T	T	47883282	1	4	32	0	1	0	0	0	0	0	0	0	4544	1276	44	3		3	DHX30	3	47883282	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	838505	47883282	150139148	167	44707	225	2									
DHX30	22907	broad.mit.edu	37	chr3	47883286	47883286	+	Intron	SNP	T	C	C													tacttggtcatgtctggtgtTccctaaaggcaggtttagag							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47883286	C	C	47883286	1	2	32	0	1	0	0	0	0	0	0	0	4544	1798	62	5		5	DHX30	3	47883286	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	4	47883286	150139144	168	44708	225	2									
CDC25A	993	broad.mit.edu	37	chr3	48207330	48207330	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggacttacaatttctggAgagatgtattttaaatcctg	9	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48207330	T	T	48207330	2	4	32	1	0	0	0	0	0	0	0	1	3092	291	11	5		5	CDC25A	3	48207330	Silent	SNP	A	TCGA-05-5428-01A-01D-1625-08	324044	48207330	149815100	169	44709											
GRM2	2912	broad.mit.edu	37	chr3	51746355	51746355	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactgtcaagtcaggatgcAgggctttagagagggagcct	15	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51746355	T	T	51746355	1	4	32	0	1	0	0	0	0	0	0	0	6863	203	7	5		5	GRM2	3	51746355	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	3539025	51746355	146276075	170	44710											
DCP1A	55802	broad.mit.edu	37	chr3	53321515	53321515	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatttcaggattctcaaactCaatgttctgctcagaagttt	6	8	5	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53321515	T	T	53321515	1	4	32	0	1	0	0	0	0	0	0	0	4331	841	29	4		4	DCP1A	3	53321515	3'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	1575160	53321515	144700915	171	44711											
CACNA2D3	55799	broad.mit.edu	37	chr3	54961830	54961830	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atatctgtccagtcttttaaGacagacgacttgaaaataga	7	7	2	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54961830	T	T	54961830	1	4	32	0	1	0	0	0	0	0	0	0	2576	957	33	3		3	CACNA2D3	3	54961830	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1640315	54961830	143060600	172	44712											
MAGI1	9223	broad.mit.edu	37	chr3	65349172	65349172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacctctccgcaggaccgtCctctgctaagcgcagaacat	8	16	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65349172	A	A	65349172	3	1	32	1	0	0	0	0	1	0	0	0	9282	855	30	3	1080	3	MAGI1	3	65349172	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	10387342	65349172	132673258	173	44713											
OR5H2	79310	broad.mit.edu	37	chr3	98001900	98001900	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgattgctcttatctggaatGacccacaacttcacatcccc	5	14	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98001900	A	A	98001900	3	1	32	1	0	0	0	0	1	0	0	0	11256	1290	45	4	171	4	OR5H2	3	98001900	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	32652728	98001900	100020530	174	44714											
TMEM45A	55076	broad.mit.edu	37	chr3	100277485	100277485	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actctttgcctgtaacttctCtgtttatttgatgaggcagt	8	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100277485	G	G	100277485	1	3	32	0	1	0	0	0	0	0	0	0	16292	928	32	4		4	TMEM45A	3	100277485	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2275585	100277485	97744945	175	44715											
MYH15	22989	broad.mit.edu	37	chr3	108205358	108205358	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagtctgagggatttgcaGataccaggagcaggtctaga	15	6	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108205358	C	C	108205358	3	2	32	1	0	0	0	0	1	0	0	0	10128	942	33	4	5021	4	MYH15	3	108205358	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	7927873	108205358	89817072	176	44716											
DZIP3	9666	broad.mit.edu	37	chr3	108388619	108388619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaacttagctttttctttGggtgcactctctctgaaact	6	10	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108388619	T	T	108388619	1	4	32	0	1	0	0	0	0	0	0	0	4905	1363	47	2		2	DZIP3	3	108388619	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	183261	108388619	89633811	177	44717											
MORC1	27136	broad.mit.edu	37	chr3	108682509	108682509	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaaatattactttccctCtaatatcactagacaatttc	1	9	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108682509	T	T	108682509	1	4	32	0	1	0	0	0	0	0	0	0	9795	928	32	4		4	MORC1	3	108682509	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	293890	108682509	89339921	178	44718											
CD96	10225	broad.mit.edu	37	chr3	111343304	111343304	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacttcagtcattcatccGacagatatattgaacgacat	7	9	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111343304	T	T	111343304	1	4	32	0	1	0	0	0	0	0	0	0	3078	1073	37	3		3	CD96	3	111343304	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2660795	111343304	86679126	179	44719											
GAP43	2596	broad.mit.edu	37	chr3	115439809	115439809	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accctcttctcagctccactCtgaagtcccttcctgtcctg	5	18	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115439809	A	A	115439809	1	1	32	0	1	0	0	0	0	0	0	0	6297	928	32	3		3	GAP43	3	115439809	3'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	4096505	115439809	82582621	180	44720											
POLQ	10721	broad.mit.edu	37	chr3	121200641	121200641	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggctcctgagaatctggatCtagtaaccagcatgccacct	9	13	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121200641	A	A	121200641	3	1	32	1	0	0	0	0	1	0	0	0	12303	913	32	3	1831	3	POLQ	3	121200641	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5760832	121200641	76821789	181	44721											
POLQ	10721	broad.mit.edu	37	chr3	121207931	121207931	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaatatttagaaaattctCatgctggccttctgatttgc	7	7	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121207931	A	A	121207931	4	1	32	1	0	0	0	0	0	1	0	0	12303	835	29	3	3985	3	POLQ	3	121207931	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	7290	121207931	76814499	182	44722											
CASR	846	broad.mit.edu	37	chr3	122003967	122003967	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgtccccagcacttgtaGtgtccagttcacagagcttt	9	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122003967	A	A	122003967	3	1	32	1	0	0	0	0	1	0	0	0	2708	1029	36	4	3218	4	CASR	3	122003967	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	796036	122003967	76018463	183	44723											
MYLK	4638	broad.mit.edu	37	chr3	123458744	123458744	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccccagacctatcctgctCaagtcagcaggaaagcaatc	7	15	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123458744	G	G	123458744	1	3	32	0	1	0	0	0	0	0	0	0	10150	841	29	4		4	MYLK	3	123458744	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1454777	123458744	74563686	184	44724											
KALRN	8997	broad.mit.edu	37	chr3	124196146	124196146	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaagcctgattccaacCagcttatcctggagcatgcg	8	12	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124196146	T	T	124196146	4	4	32	1	0	0	0	0	0	1	0	0	8045	595	21	4	4256	4	KALRN	3	124196146	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	737402	124196146	73826284	185	44725											
HEG1	57493	broad.mit.edu	37	chr3	124731608	124731608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgagggaacgtgaagctgGgctgtactctgctgtaacgc	14	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124731608	T	T	124731608	3	4	32	1	0	0	0	0	1	0	0	0	7111	1232	43	2	1378	2	HEG1	3	124731608	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	535462	124731608	73290822	186	44726											
UROC1	131669	broad.mit.edu	37	chr3	126220026	126220026	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagggggccccatctgggttCccaagctggccatcaactcc	11	16	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126220026	T	T	126220026	1	4	32	0	1	0	0	0	0	0	0	0	17154	870	30	4		4	UROC1	3	126220026	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1488418	126220026	71802404	187	44727											
MGLL	11343	broad.mit.edu	37	chr3	127439854	127439854	+	Intron	DEL	G	-	-													aaatggaagacccatgtcccGgggaacctgtaggaattgta							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127439854	-	-	127439854	6	5	32	0	1	1	0	1	0	0	0	0	9649	1131	39	0		0	MGLL	3	127439854	Intron	DEL	G	TCGA-05-5428-01A-01D-1625-08	1219828	127439854	70582576	188	44728											
PIK3R4	30849	broad.mit.edu	37	chr3	130453046	130453046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccagatgaaagctacaaaGgcaatttacatacgatttaa	6	7	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130453046	A	A	130453046	1	1	32	0	1	0	0	0	0	0	0	0	12016	1015	35	4		4	PIK3R4	3	130453046	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3013192	130453046	67569384	189	44729											
ACAD11	84129	broad.mit.edu	37	chr3	132294687	132294687	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgatctgcaaagcgcgttCcgccaaacctactgttctca	7	14	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132294687	T	T	132294687	3	4	32	1	0	0	0	0	1	0	0	0	109	864	30	4	428	4	ACAD11	3	132294687	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1841641	132294687	65727743	190	44730											
BFSP2	8419	broad.mit.edu	37	chr3	133118800	133118800	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcatggaagacagcagaCaaagcagccccagggatagg	12	10	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133118800	A	A	133118800	1	1	32	0	1	0	0	0	0	0	0	0	1422	493	17	3		3	BFSP2	3	133118800	5'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	824113	133118800	64903630	191	44731											
KY	339855	broad.mit.edu	37	chr3	134329079	134329079	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtccaccaggccgctgCcccaggtgctgtccaccagg	13	16	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134329079	T	T	134329079	3	4	32	1	0	0	0	0	1	0	0	0	8658	739	26	4	1140	4	KY	3	134329079	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1210279	134329079	63693351	192	44732											
DZIP1L	199221	broad.mit.edu	37	chr3	137807203	137807203	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctctgggaagaaaggCatggagcatcagctcacctg	12	11	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137807203	T	T	137807203	1	4	32	0	1	0	0	0	0	0	0	0	4904	725	25	4		4	DZIP1L	3	137807203	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3478124	137807203	60215227	193	44733											
SLC9A9	285195	broad.mit.edu	37	chr3	143297460	143297460	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggcatacgcagaccccatTgcaaatgagccagcgaagat	10	11	0	3	rs151096476	byFrequency;by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143297460	A	A	143297460	2	1	32	1	0	0	0	0	0	0	0	1	14835	1799	63	5		5	SLC9A9	3	143297460	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	5490257	143297460	54724970	194	44734											
PLSCR4	57088	broad.mit.edu	37	chr3	145917794	145917794	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctgagttgtttttaatatCatatctattattagtttcaa	5	4	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145917794	A	A	145917794	3	1	32	1	0	0	0	0	1	0	0	0	12207	826	29	3	575	3	PLSCR4	3	145917794	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2620334	145917794	52104636	195	44735											
GYG1	2992	broad.mit.edu	37	chr3	148714027	148714027	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaagcatcagtcttacaGcagatgggtcacttgttctg	9	8	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148714027	A	A	148714027	1	1	32	0	1	0	0	0	0	0	0	0	6970	986	34	4		4	GYG1	3	148714027	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2796233	148714027	49308403	196	44736											
EIF2A	83939	broad.mit.edu	37	chr3	150264620	150264620	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacgccgctcttgacaggtGagttctgaagaagcgaggga	14	10	2	4	rs73869253		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150264620	A	A	150264620	1	1	32	0	1	0	0	0	0	0	0	0	5035	1305	45	4		4	EIF2A	3	150264620	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1550593	150264620	47757810	197	44737											
KCNAB1	7881	broad.mit.edu	37	chr3	156254345	156254345	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatttcagctgtggtttatGaagatatatgattctagatt	9	3	2	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156254345	A	A	156254345	1	1	32	0	1	0	0	0	0	0	0	0	8079	1305	45	4		4	KCNAB1	3	156254345	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	5989725	156254345	41768085	198	44738											
FNDC3B	64778	broad.mit.edu	37	chr3	172050861	172050861	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttatactgatgtttcttcCtggctttgccttttcaggat	7	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172050861	T	T	172050861	1	4	32	0	1	0	0	0	0	0	0	0	6028	696	24	4		4	FNDC3B	3	172050861	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	15796516	172050861	25971569	199	44739											
HTR3C	170572	broad.mit.edu	37	chr3	183776408	183776409	+	Intron	DNP	CC	AG	AG													gcccctgtttgacttctgatCccagcagctctttgattgtc							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	183776409	AG	AG	183776408	1	1	32	0	1	0	0	0	0	0	0	0	7516	870	30	3		3	HTR3C	3	183776408	Intron	DNP	CC	TCGA-05-5428-01A-01D-1625-08	11725547	183776408	14246022	200	44740											
VPS8	23355	broad.mit.edu	37	chr3	184648312	184648312	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccattcccggacacagtgcaGaggagaagcagtctgtatgg	13	10	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184648312	A	A	184648312	3	1	32	1	0	0	0	0	1	0	0	0	17345	943	33	4	2980	4	VPS8	3	184648312	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	871904	184648312	13374118	201	44741											
TRA2B	6434	broad.mit.edu	37	chr3	185636261	185636261	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagattgtctaagtctcaaTagatcacaattagaccaaac	5	9	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185636261	C	C	185636261	1	2	32	0	1	0	0	0	0	0	0	0	16558	1421	49	5		5	TRA2B	3	185636261	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	987949	185636261	12386169	202	44742											
FETUB	26998	broad.mit.edu	37	chr3	186363940	186363940	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccttgacaatgcctctggtGacatattgtttctgtagata	9	8	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186363940	T	T	186363940	1	4	32	0	1	0	0	0	0	0	0	0	5878	1305	45	3		3	FETUB	3	186363940	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	727679	186363940	11658490	203	44743											
KNG1	3827	broad.mit.edu	37	chr3	186460133	186460133	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttaatttaagtggctaTgggtatttctttcatacttt	6	5	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186460133	C	C	186460133	1	2	32	0	1	0	0	0	0	0	0	0	8498	1479	51	5		5	KNG1	3	186460133	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	96193	186460133	11562297	204	44744											
LPP	4026	broad.mit.edu	37	chr3	188426208	188426208	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggcctagagctgacttctGaagtaactatcttgctctga	11	9	3	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188426208	A	A	188426208	1	1	32	0	1	0	0	0	0	0	0	0	9010	1305	45	4		4	LPP	3	188426208	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1966075	188426208	9596222	205	44745											
UBXN7	26043	broad.mit.edu	37	chr3	196083732	196083732	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaagcctataaaaacaagaGaaagacaaagccattagacg	7	8	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196083732	C	C	196083732	1	2	32	0	1	0	0	0	0	0	0	0	17044	957	33	4		4	UBXN7	3	196083732	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	7657524	196083732	1938698	206	44746											
MFI2	4241	broad.mit.edu	37	chr3	196733536	196733536	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactgggacacctcggctcGggccccgttggggcacagca	14	14	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196733536	A	A	196733536	4	1	32	1	0	0	0	0	0	1	0	0	9615	1124	39	4	406	4	MFI2	3	196733536	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	649804	196733536	1288894	207	44747											
FAM53A	152877	broad.mit.edu	37	chr4	1659091	1659091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcccaggagcccagtcCcagccctgctcaggcctccg	10	21	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1659091	A	A	1659091	1	1	32	0	1	0	0	0	0	0	0	0	5630	638	22	2		2	FAM53A	4	1659091	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08		1659091	189495185	208	44748											
TACC3	10460	broad.mit.edu	37	chr4	1730169	1730169	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtatctgatggcgccaCcagcaaaagggcacccccac	10	14	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1730169	T	T	1730169	3	4	32	1	0	0	0	0	1	0	0	0	15622	507	18	4	1050	4	TACC3	4	1730169	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	71078	1730169	189424107	209	44749											
ZFYVE28	57732	broad.mit.edu	37	chr4	2307056	2307056	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccagctcctggtcgtcGtactgcatggagcaggccag	13	13	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2307056	T	T	2307056	4	4	32	1	0	0	0	0	0	1	0	0	17796	1140	40	3	1676	3	ZFYVE28	4	2307056	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	576887	2307056	188847220	210	44750											
JAKMIP1	152789	broad.mit.edu	37	chr4	6066733	6066733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgtctccacaacatgCttctgtaaaacgcaatttgt	5	9	2	0	rs148355390		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6066733	A	A	6066733	3	1	32	1	0	0	0	0	1	0	0	0	8010	796	28	3	1317	3	JAKMIP1	4	6066733	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3759677	6066733	185087543	211	44751											
CPZ	8532	broad.mit.edu	37	chr4	8621162	8621162	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggacccaagaactttattCatgggctgcggaggactggg	15	8	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8621162	T	T	8621162	3	4	32	1	0	0	0	0	1	0	0	0	3871	826	29	4	1819	4	CPZ	4	8621162	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2554429	8621162	182533114	212	44752											
LAP3	51056	broad.mit.edu	37	chr4	17596903	17596903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctcctgacctcgtgatcCgcccacctcggcctcccaaa	7	19	1	2	rs113557457		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17596903	T	T	17596903	1	4	32	0	1	0	0	0	0	0	0	0	8695	667	23	4		4	LAP3	4	17596903	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	8975741	17596903	173557373	213	44753											
LAP3	51056	broad.mit.edu	37	chr4	17597048	17597048	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catagtggtggtatctccatCaaggcttctgcaaatatgga	10	8	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17597048	T	T	17597048	2	4	32	1	0	0	0	0	0	0	0	1	8695	816	29	4		4	LAP3	4	17597048	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	145	17597048	173557228	214	44754											
LGI2	55203	broad.mit.edu	37	chr4	25013978	25013978	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatgttgtcatagctccGgaaattcatttcaatgtggt	9	6	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25013978	A	A	25013978	3	1	32	1	0	0	0	0	1	0	0	0	8824	1115	39	4	846	4	LGI2	4	25013978	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	7416930	25013978	166140298	215	44755											
CHRNA9	55584	broad.mit.edu	37	chr4	40351530	40351530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacttgaaaaaatggagcCaatttcgactcaatacagac	6	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40351530	A	A	40351530	1	1	32	0	1	0	0	0	0	0	0	0	3420	609	21	2		2	CHRNA9	4	40351530	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	15337552	40351530	150802746	216	44756											
GABRA2	2555	broad.mit.edu	37	chr4	46252673	46252673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttgagtctgctacttaaCattttctaaagtccacttca	7	9	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46252673	A	A	46252673	1	1	32	0	1	0	0	0	0	0	0	0	6221	493	17	3		3	GABRA2	4	46252673	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5901143	46252673	144901603	217	44757											
GABRA2	2555	broad.mit.edu	37	chr4	46307791	46307791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcaatctagtgctacaCgaacggttgtgtatttcata	7	9	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46307791	A	A	46307791	1	1	32	0	1	0	0	0	0	0	0	0	6221	551	19	3		3	GABRA2	4	46307791	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	55118	46307791	144846485	218	44758											
NFXL1	152518	broad.mit.edu	37	chr4	47887580	47887581	+	Frame_Shift_Ins	INS	-	A	A													cacaagtgaccacatttctcINScaaaactttttggcaaggtt							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47887581	A	A	47887580	7	5	32	1	0	1	1	0	0	0	0	0	10483	864	30	0	1016	0	NFXL1	4	47887580	Frame_Shift_Ins	INS	-	TCGA-05-5428-01A-01D-1625-08	1579789	47887580	143266696	219	44759											
AASDH	132949	broad.mit.edu	37	chr4	57221506	57221506	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacgcttcaccaccaagggcTaatactcgaagagaagtagt	9	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57221506	A	A	57221506	3	1	32	1	0	0	0	0	1	0	0	0	22	1519	53	5	2391	5	AASDH	4	57221506	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	9333926	57221506	133932770	220	44760											
LPHN3	23284	broad.mit.edu	37	chr4	62445433	62445433	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atattaaaacatctgaatttCatgcttttcttttgacctca	3	8	4	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62445433	T	T	62445433	1	4	32	0	1	0	0	0	0	0	0	0	9004	841	29	4		4	LPHN3	4	62445433	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5223927	62445433	128708843	221	44761											
TECRL	253017	broad.mit.edu	37	chr4	65155422	65155422	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagaaaaagaaaaaagaActaacctgtgtgattgggat	10	3	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65155422	T	T	65155422	1	4	32	0	1	0	0	0	0	0	0	0	15868	58	2	5		5	TECRL	4	65155422	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	2709989	65155422	125998854	222	44762											
STAP1	26228	broad.mit.edu	37	chr4	68449284	68449284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgtttttttatctcacCtctgtagatgtttttataca	4	7	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68449284	A	A	68449284	1	1	32	0	1	0	0	0	0	0	0	0	15370	696	24	2		2	STAP1	4	68449284	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3293862	68449284	122704992	223	44763											
STAP1	26228	broad.mit.edu	37	chr4	68472001	68472001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctaattaagtttttctacCcacaatttctaggtcaagaa	5	9	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68472001	A	A	68472001	1	1	32	0	1	0	0	0	0	0	0	0	15370	638	22	2		2	STAP1	4	68472001	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	22717	68472001	122682275	224	44764											
UBA6	55236	broad.mit.edu	37	chr4	68484729	68484729	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgtattaatcagtgtcatGactgaagtagtatcttactg	8	6	3	2	rs140327502		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68484729	T	T	68484729	3	4	32	1	0	0	0	0	1	0	0	0	16958	1290	45	3	17	3	UBA6	4	68484729	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	12728	68484729	122669547	225	44765											
UGT2B11	10720	broad.mit.edu	37	chr4	70080278	70080278	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctgaagatgccagtaCagtcacctcatgacctctct	9	12	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70080278	G	G	70080278	3	3	32	1	0	0	0	0	1	0	0	0	17083	478	17	4	1450	4	UGT2B11	4	70080278	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1595549	70080278	121073998	226	44766											
UGT2B28	54490	broad.mit.edu	37	chr4	70146102	70146102	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccatgtactcaggatgctCctataatatatttactttgg	6	8	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70146102	A	A	70146102	1	1	32	0	1	0	0	0	0	0	0	0	17086	870	30	3		3	UGT2B28	4	70146102	5'Flank	SNP	C	TCGA-05-5428-01A-01D-1625-08	65824	70146102	121008174	227	44767											
SLC4A4	8671	broad.mit.edu	37	chr4	72332251	72332251	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactattctgagcagcaccGgacctgtcctagtttttgag	9	11	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72332251	T	T	72332251	4	4	32	1	0	0	0	0	0	1	0	0	14770	1117	39	1	1755	1	SLC4A4	4	72332251	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2186149	72332251	118822025	228	44768											
USO1	8615	broad.mit.edu	37	chr4	76721751	76721751	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttattttttttaaagcatctCaatatgcttatctccgtaga	4	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76721751	T	T	76721751	1	4	32	0	1	0	0	0	0	0	0	0	17165	841	29	4		4	USO1	4	76721751	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4389500	76721751	114432525	229	44769											
SEC31A	22872	broad.mit.edu	37	chr4	83763285	83763285	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaccaaatccctttcaaGcgcagacctgttctttggga	7	13	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83763285	A	A	83763285	1	1	32	0	1	0	0	0	0	0	0	0	14111	986	34	4		4	SEC31A	4	83763285	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	7041534	83763285	107390991	230	44770											
PKD2	5311	broad.mit.edu	37	chr4	88996731	88996731	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcagtcatggtttaggcaCgccagtgggactaaatggtc	13	8	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88996731	T	T	88996731	3	4	32	1	0	0	0	0	1	0	0	0	12061	536	19	4	2850	4	PKD2	4	88996731	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5233446	88996731	102157545	231	44771											
HERC6	55008	broad.mit.edu	37	chr4	89349840	89349840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcagacgaagtcgcctgGttaaagatgctctgcgtcaa	12	9	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89349840	T	T	89349840	3	4	32	1	0	0	0	0	1	0	0	0	7129	1261	44	3	1903	3	HERC6	4	89349840	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	353109	89349840	101804436	232	44772											
MMRN1	22915	broad.mit.edu	37	chr4	90830583	90830583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatagccactgtttttgCaccataataaattatagccg	6	8	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90830583	A	A	90830583	1	1	32	0	1	0	0	0	0	0	0	0	9764	725	25	3		3	MMRN1	4	90830583	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1480743	90830583	100323693	233	44773											
ADH1A	124	broad.mit.edu	37	chr4	100229037	100229037	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatactgcaataggaaagaAgagacattgtgttaacattt	10	4	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100229037	G	G	100229037	1	3	32	0	1	0	0	0	0	0	0	0	307	87	3	5		5	ADH1A	4	100229037	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	9398454	100229037	90925239	234	44774											
C4orf17	84103	broad.mit.edu	37	chr4	100445681	100445681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaattttatttcagagcCcagtagaaaaattaaagagt	6	7	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100445681	A	A	100445681	3	1	32	1	0	0	0	0	1	0	0	0	2275	623	22	2	351	2	C4orf17	4	100445681	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	216644	100445681	90708595	235	44775											
DAPP1	27071	broad.mit.edu	37	chr4	100774501	100774501	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccttgtgcccacagcacCttctgtaagtgaccttcaac	7	14	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100774501	T	T	100774501	3	4	32	1	0	0	0	0	1	0	0	0	4272	681	24	4	499	4	DAPP1	4	100774501	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	328820	100774501	90379775	236	44776											
UBE2D3	7323	broad.mit.edu	37	chr4	103720199	103720200	+	Intron	DEL	AT	-	-													ttataatggttaagttgaacAtaaatataattcaaatattt							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103720200	-	-	103720199	6	5	32	0	1	1	0	1	0	0	0	0	16976	232	8	0		0	UBE2D3	4	103720199	Intron	DEL	AT	TCGA-05-5428-01A-01D-1625-08	2945698	103720199	87434077	237	44777											
UBE2D3	7323	broad.mit.edu	37	chr4	103723778	103723778	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaaaagaatacaccgccTtgatatgggctgtcattctg	9	9	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103723778	G	G	103723778	3	3	32	1	0	0	0	0	1	0	0	0	16976	1606	56	5	374	5	UBE2D3	4	103723778	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	3579	103723778	87430498	238	44778											
ADAD1	132612	broad.mit.edu	37	chr4	123336679	123336679	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgcatatccccttcaaatGaacttggaatataaatttct	4	9	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123336679	A	A	123336679	3	1	32	1	0	0	0	0	1	0	0	0	231	1290	45	4	1429	4	ADAD1	4	123336679	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	19612901	123336679	67817597	239	44779											
PCDH10	57575	broad.mit.edu	37	chr4	134084251	134084251	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctgattatcgcagcaatCtgcatgttcctggcatggac	10	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134084251	T	T	134084251	2	4	32	1	0	0	0	0	0	0	0	1	11601	912	32	4		4	PCDH10	4	134084251	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	10747572	134084251	57070025	240	44780											
INPP4B	8821	broad.mit.edu	37	chr4	143352393	143352393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccttcttctgatgccCcttcctctttaatttccatg	5	15	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143352393	A	A	143352393	3	1	32	1	0	0	0	0	1	0	0	0	7823	623	22	2	2846	2	INPP4B	4	143352393	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	9268142	143352393	47801883	241	44781											
SLC10A7	84068	broad.mit.edu	37	chr4	147214982	147214982	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaattaagcattcatttctaGtcaaattaacactagacatg	4	7	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147214982	C	C	147214982	1	2	32	0	1	0	0	0	0	0	0	0	14492	1044	36	4		4	SLC10A7	4	147214982	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3862589	147214982	43939294	242	44782											
SLC10A7	84068	broad.mit.edu	37	chr4	147438078	147438078	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagttatcttctgctatagTgaatccttcagattatagct	6	8	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147438078	A	A	147438078	1	1	32	0	1	0	0	0	0	0	0	0	14492	1711	59	5		5	SLC10A7	4	147438078	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	223096	147438078	43716198	243	44783											
NPY1R	4886	broad.mit.edu	37	chr4	164247106	164247106	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagagtccgatggaaattGatcaaagcacacgtatttgt	10	6	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164247106	A	A	164247106	4	1	32	1	0	0	0	0	0	1	0	0	10703	1299	45	4	561	4	NPY1R	4	164247106	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	16809028	164247106	26907170	244	44784											
TKTL2	84076	broad.mit.edu	37	chr4	164393186	164393186	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccaatgccaccttccctGtagtgatcctccactgtgat	6	15	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164393186	T	T	164393186	4	4	32	1	0	0	0	0	0	1	0	0	16059	1372	48	3	183	3	TKTL2	4	164393186	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	146080	164393186	26761090	245	44785											
TLL1	7092	broad.mit.edu	37	chr4	167021921	167021921	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagagatttattcaattggaGattcagttttaattcatttc	6	4	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167021921	T	T	167021921	3	4	32	1	0	0	0	0	1	0	0	0	16068	942	33	3	3017	3	TLL1	4	167021921	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2628735	167021921	24132355	246	44786											
SPOCK3	50859	broad.mit.edu	37	chr4	168004474	168004474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctcctactgagatgccCcacagttccccaccatgtgc	7	17	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168004474	A	A	168004474	1	1	32	0	1	0	0	0	0	0	0	0	15199	638	22	2		2	SPOCK3	4	168004474	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	982553	168004474	23149802	247	44787											
NEK1	4750	broad.mit.edu	37	chr4	170315722	170315722	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catttcaaatcaagctgtatCtactttaaaaaaaacccatt	2	9	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170315722	G	G	170315722	1	3	32	0	1	0	0	0	0	0	0	0	10416	928	32	4		4	NEK1	4	170315722	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2311248	170315722	20838554	248	44788											
GALNTL6	442117	broad.mit.edu	37	chr4	173852453	173852453	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcagaacagactggggttGatatggctttctgtaaccag	11	8	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173852453	A	A	173852453	1	1	32	0	1	0	0	0	0	0	0	0	6287	1305	45	4		4	GALNTL6	4	173852453	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3536731	173852453	17301823	249	44789											
VEGFC	7424	broad.mit.edu	37	chr4	177650639	177650639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaggctggcaacttctaCtggtttgatatataaggctt	9	8	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177650639	A	A	177650639	1	1	32	0	1	0	0	0	0	0	0	0	17279	580	20	3		3	VEGFC	4	177650639	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3798186	177650639	13503637	250	44790											
CCDC110	256309	broad.mit.edu	37	chr4	186379284	186379284	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaggacttgcgtacctttCaaatccgaagccaaaggcct	8	13	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186379284	G	G	186379284	3	3	32	1	0	0	0	0	1	0	0	0	2773	825	29	4	52	4	CCDC110	4	186379284	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	8728645	186379284	4774992	251	44791											
SLC12A7	10723	broad.mit.edu	37	chr5	1075353	1075353	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagcccacctggacgtgctCccagctgcccctgtgagggc	12	17	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1075353	A	A	1075353	1	1	32	0	1	0	0	0	0	0	0	0	14501	870	30	3		3	SLC12A7	5	1075353	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08		1075353	179839907	252	44792											
SLC6A19	340024	broad.mit.edu	37	chr5	1209045	1209045	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccgggcccaggggtcgcctCtgctgggaagccgttccacc	14	17	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1209045	T	T	1209045	1	4	32	0	1	0	0	0	0	0	0	0	14796	928	32	4		4	SLC6A19	5	1209045	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	133692	1209045	179706215	253	44793											
SLC6A3	6531	broad.mit.edu	37	chr5	1443098	1443098	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacagcaaagccaatgacgGacaggagaaagtcgatcttc	10	11	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1443098	A	A	1443098	3	1	32	1	0	0	0	0	1	0	0	0	14799	1174	41	4	1703	4	SLC6A3	5	1443098	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	234053	1443098	179472162	254	44794											
IRX1	79192	broad.mit.edu	37	chr5	3600222	3600222	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcacagggctccctgctcaAcatgcgctccttcctgggcg	11	17	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3600222	G	G	3600222	3	3	32	1	0	0	0	0	1	0	0	0	7913	43	2	5	1166	5	IRX1	5	3600222	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	2157124	3600222	177315038	255	44795											
MTRR	4552	broad.mit.edu	37	chr5	7886681	7886681	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgtgtaaaacattttattCttcatcttctatgtcatgaa	5	6	5	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7886681	T	T	7886681	1	4	32	0	1	0	0	0	0	0	0	0	10055	928	32	4		4	MTRR	5	7886681	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4286459	7886681	173028579	256	44796											
SEMA5A	9037	broad.mit.edu	37	chr5	9044623	9044623	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taccgctggcagtaagtataGacgagcagggtgaggaggca	16	7	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9044623	C	C	9044623	2	2	32	1	0	0	0	0	0	0	0	1	14150	929	33	4		4	SEMA5A	5	9044623	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1157942	9044623	171870637	257	44797											
SEMA5A	9037	broad.mit.edu	37	chr5	9190586	9190586	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtccacggtgccacactGaaagggaagacgggccaggt	15	11	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9190586	A	A	9190586	1	1	32	0	1	0	0	0	0	0	0	0	14150	1305	45	4		4	SEMA5A	5	9190586	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	145963	9190586	171724674	258	44798											
MARCH6	10299	broad.mit.edu	37	chr5	10407152	10407152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtgtgctcagaagtctGcctgtcttgcacaggagtga	13	8	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10407152	T	T	10407152	1	4	32	0	1	0	0	0	0	0	0	0	9397	1334	46	3		3	MARCH6	5	10407152	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1216566	10407152	170508108	259	44799											
CTNND2	1501	broad.mit.edu	37	chr5	11732184	11732184	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataatttaatctttaacgttCatctagaaaaacaattttta	2	5	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11732184	T	T	11732184	1	4	32	0	1	0	0	0	0	0	0	0	4054	841	29	4		4	CTNND2	5	11732184	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1325032	11732184	169183076	260	44800											
DNAH5	1767	broad.mit.edu	37	chr5	13866016	13866016	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagatattatcaaattgattCtaataaaaacacaagtgaaa	4	4	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13866016	A	A	13866016	5	1	32	1	0	0	0	0	0	0	1	0	4644	927	32	3	9970	3	DNAH5	5	13866016	Splice_Site	SNP	C	TCGA-05-5428-01A-01D-1625-08	2133832	13866016	167049244	261	44801											
DNAH5	1767	broad.mit.edu	37	chr5	13922154	13922154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaagagaagcattacacaCttatgtactgtgcttgttga	8	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13922154	A	A	13922154	1	1	32	0	1	0	0	0	0	0	0	0	4644	580	20	3		3	DNAH5	5	13922154	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	56138	13922154	166993106	262	44802											
ANKH	56172	broad.mit.edu	37	chr5	14751287	14751287	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtacaaggagaggatcGggatgagcaggggctcccgg	17	9	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14751287	A	A	14751287	3	1	32	1	0	0	0	0	1	0	0	0	627	1116	39	4	932	4	ANKH	5	14751287	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	829133	14751287	166163973	263	44803											
ZNF622	90441	broad.mit.edu	37	chr5	16465718	16465718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtcttatagtgggcccgCtgcatgtccgcgtcgcggaa	13	13	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16465718	A	A	16465718	3	1	32	1	0	0	0	0	1	0	0	0	18173	796	28	3	1400	3	ZNF622	5	16465718	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1714431	16465718	164449542	264	44804											
CDH18	1016	broad.mit.edu	37	chr5	19483608	19483608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgggcagataatacacatCctgaacagttcgactaaatc	7	9	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19483608	A	A	19483608	3	1	32	1	0	0	0	0	1	0	0	0	3133	855	30	3	696	3	CDH18	5	19483608	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3017890	19483608	161431652	265	44805											
CDH12	1010	broad.mit.edu	37	chr5	21883404	21883404	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaatacatcaaaaggtcaGaaatgtgaattccaggatgc	8	6	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883404	A	A	21883404	1	1	32	0	1	0	0	0	0	0	0	0	3128	957	33	4		4	CDH12	5	21883404	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2399796	21883404	159031856	266	44806											
CDH12	1010	broad.mit.edu	37	chr5	21883730	21883730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcctcatgacttaggaaAagttggagaggtcattgtga	12	6	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21883730	T	T	21883730	1	4	32	0	1	0	0	0	0	0	0	0	3128	29	1	5		5	CDH12	5	21883730	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	326	21883730	159031530	267	44807											
PRDM9	56979	broad.mit.edu	37	chr5	23522857	23522857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccccagggctgagaattGggccatcaggcatccctcag	12	14	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23522857	T	T	23522857	3	4	32	1	0	0	0	0	1	0	0	0	12569	1348	47	2	771	2	PRDM9	5	23522857	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1639127	23522857	157392403	268	44808											
CDH10	1008	broad.mit.edu	37	chr5	24491686	24491686	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttttaaggtttcttaccCagtagaatgatgatgcagag	10	5	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24491686	A	A	24491686	2	1	32	1	0	0	0	0	0	0	0	1	3126	608	21	2		2	CDH10	5	24491686	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	968829	24491686	156423574	269	44809											
TARS	6897	broad.mit.edu	37	chr5	33455797	33455797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaagaaagaaactttactGgcaatgtttaaggtaaattg	9	3	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33455797	T	T	33455797	2	4	32	1	0	0	0	0	0	0	0	1	15678	1335	47	2		2	TARS	5	33455797	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	8964111	33455797	147459463	270	44810											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881630	33881630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagtgagggagattggtaGtaaagcaaagccactttcgt	12	6	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33881630	T	T	33881630	1	4	32	0	1	0	0	0	0	0	0	0	257	1044	36	3		3	ADAMTS12	5	33881630	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	425833	33881630	147033630	271	44811											
RXFP3	51289	broad.mit.edu	37	chr5	33937116	33937116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgtggtgtactgggtgGtgtgcgccctggggttggcg	20	8	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33937116	T	T	33937116	3	4	32	1	0	0	0	0	1	0	0	0	13872	1261	44	3	273	3	RXFP3	5	33937116	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	55486	33937116	146978144	272	44812											
DAB2	1601	broad.mit.edu	37	chr5	39383364	39383364	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagatccactaacaggatatCtttgctttcctatcacattt	4	10	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39383364	G	G	39383364	3	3	32	1	0	0	0	0	1	0	0	0	4251	913	32	4	1635	4	DAB2	5	39383364	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5446248	39383364	141531896	273	44813											
OXCT1	5019	broad.mit.edu	37	chr5	41794716	41794716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagagccttgctaacacaCtcagacgatgactcagctca	7	13	4	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41794716	A	A	41794716	1	1	32	0	1	0	0	0	0	0	0	0	11423	580	20	3		3	OXCT1	5	41794716	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2411352	41794716	139120544	274	44814											
NDUFAF2	91942	broad.mit.edu	37	chr5	60241050	60241050	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacccctactgcgggtcccGctgctggcagcgctggaaac	12	15	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60241050	A	A	60241050	1	1	32	0	1	0	0	0	0	0	0	0	10370	1102	38	4		4	NDUFAF2	5	60241050	5'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	18446334	60241050	120674210	275	44815											
MAP1B	4131	broad.mit.edu	37	chr5	71491552	71491552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattaagaaggaaggcaaGgccgcagaggctgtcgctgc	15	9	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71491552	T	T	71491552	3	4	32	1	0	0	0	0	1	0	0	0	9320	991	35	2	2388	2	MAP1B	5	71491552	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	11250502	71491552	109423708	276	44816											
BHMT	635	broad.mit.edu	37	chr5	78416224	78416224	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgcccgacaagtggctgatGaaggagatgctttggtagca	14	8	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78416224	A	A	78416224	3	1	32	1	0	0	0	0	1	0	0	0	1431	1291	45	4	351	4	BHMT	5	78416224	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	6924672	78416224	102499036	277	44817											
LNPEP	4012	broad.mit.edu	37	chr5	96322463	96322463	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcctggtatttgctgtgtGaaataaataagcttttagat	8	4	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96322463	A	A	96322463	1	1	32	0	1	0	0	0	0	0	0	0	8938	1305	45	4		4	LNPEP	5	96322463	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	17906239	96322463	84592797	278	44818											
SLCO6A1	133482	broad.mit.edu	37	chr5	101813625	101813626	+	Intron	DNP	CA	AG	AG													tcaaacataaaacaaatgtgCagtattctttatcaaatatt					rs115504797	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	101813626	AG	AG	101813625	1	1	32	0	1	0	0	0	0	0	0	0	14846	725	25	3		3	SLCO6A1	5	101813625	Intron	DNP	CA	TCGA-05-5428-01A-01D-1625-08	5491162	101813625	79101635	279	44819											
SEMA6A	57556	broad.mit.edu	37	chr5	115782751	115782751	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggacccagggaggcctccCgctgtggaactttggggggc	19	11	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115782751	T	T	115782751	3	4	32	1	0	0	0	0	1	0	0	0	14152	652	23	4	445	4	SEMA6A	5	115782751	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	13969126	115782751	65132509	280	44820											
SEMA6A	57556	broad.mit.edu	37	chr5	115782852	115782852	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgatggtcttatactcCagtgtggcggcctggtcctc	11	12	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115782852	A	A	115782852	2	1	32	1	0	0	0	0	0	0	0	1	14152	581	21	2		2	SEMA6A	5	115782852	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	101	115782852	65132408	281	44821											
DMXL1	1657	broad.mit.edu	37	chr5	118525409	118525409	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctttttgttagtttcttCactagttgaagaaggagaaa	8	4	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118525409	T	T	118525409	3	4	32	1	0	0	0	0	1	0	0	0	4634	838	29	4	7256	4	DMXL1	5	118525409	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2742557	118525409	62389851	282	44822											
MEGF10	84466	broad.mit.edu	37	chr5	126753237	126753237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcatggaattacccacaCatttagtgatcattgctaaa	6	9	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126753237	A	A	126753237	1	1	32	0	1	0	0	0	0	0	0	0	9553	493	17	3		3	MEGF10	5	126753237	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	8227828	126753237	54162023	283	44823											
FBN2	2201	broad.mit.edu	37	chr5	127613569	127613569	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatatagaggtgcccatcgtTacctatacaagaggttccac	9	10	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127613569	C	C	127613569	1	2	32	0	1	0	0	0	0	0	0	0	5760	1769	61	5		5	FBN2	5	127613569	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	860332	127613569	53301691	284	44824											
HSPA9	3313	broad.mit.edu	37	chr5	137892117	137892117	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catccagatcaagttagaatCaaaatccacttcagcccttg	5	12	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137892117	G	G	137892117	1	3	32	0	1	0	0	0	0	0	0	0	7486	841	29	4		4	HSPA9	5	137892117	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	10278548	137892117	43023143	285	44825											
PCDHB6	56130	broad.mit.edu	37	chr5	140531513	140531513	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacgacaactcgcccttcGtgttgtacccgctgcagaac	8	16	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140531513	A	A	140531513	3	1	32	1	0	0	0	0	1	0	0	0	11640	1145	40	4	1677	4	PCDHB6	5	140531513	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2639396	140531513	40383747	286	44826											
PCDHB7	56129	broad.mit.edu	37	chr5	140552772	140552772	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttttcagattttccgtgCtgaactatgggtcagagaca	9	9	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140552772	T	T	140552772	3	4	32	1	0	0	0	0	1	0	0	0	11641	797	28	4	358	4	PCDHB7	5	140552772	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	21259	140552772	40362488	287	44827											
PCDHB8	56128	broad.mit.edu	37	chr5	140559034	140559034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgccctgcacatcggcagCgtcagcgccacagacagaga	11	17	1	2	rs113701735		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559034	A	A	140559034	3	1	32	1	0	0	0	0	1	0	0	0	11642	767	27	3	1421	3	PCDHB8	5	140559034	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	6262	140559034	40356226	288	44828											
JAKMIP2	9832	broad.mit.edu	37	chr5	146991754	146991754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtttactgtaactatacCtgcctctgcaagacacacaa	6	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146991754	A	A	146991754	1	1	32	0	1	0	0	0	0	0	0	0	8011	696	24	2		2	JAKMIP2	5	146991754	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	6432720	146991754	33923506	289	44829											
SPINK5	11005	broad.mit.edu	37	chr5	147444943	147444943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaagatcaggttagtcCtgctttttctgttcattgaa	9	6	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147444943	A	A	147444943	1	1	32	0	1	0	0	0	0	0	0	0	15180	696	24	2		2	SPINK5	5	147444943	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	453189	147444943	33470317	290	44830											
SPINK5	11005	broad.mit.edu	37	chr5	147450049	147450049	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctttctttccaatgtttGagttaacagctagtctctga	6	8	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147450049	C	C	147450049	1	2	32	0	1	0	0	0	0	0	0	0	15180	1305	45	4		4	SPINK5	5	147450049	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	5106	147450049	33465211	291	44831											
SH3TC2	79628	broad.mit.edu	37	chr5	148418026	148418026	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttttctcctggctcataaCccgtcaaggccttacagcgt	7	15	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148418026	T	T	148418026	3	4	32	1	0	0	0	0	1	0	0	0	14375	507	18	4	3073	4	SH3TC2	5	148418026	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	967977	148418026	32497234	292	44832											
ABLIM3	22885	broad.mit.edu	37	chr5	148627520	148627520	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggctctggaagcccaacggGgcggggacacctttctctgt	14	12	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148627520	C	C	148627520	1	2	32	0	1	0	0	0	0	0	0	0	96	1247	43	4		4	ABLIM3	5	148627520	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	209494	148627520	32287740	293	44833											
NMUR2	56923	broad.mit.edu	37	chr5	151777633	151777633	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacttacacagcatcttgtTgactgattttctgcagggtc	9	10	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151777633	G	G	151777633	3	3	32	1	0	0	0	0	1	0	0	0	10602	1812	63	5	460	5	NMUR2	5	151777633	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	3150113	151777633	29137627	294	44834											
SAP30L	79685	broad.mit.edu	37	chr5	153826469	153826469	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcactccccgccgtgggcctCgccgccccggctctgcagaa	12	20	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153826469	T	T	153826469	1	4	32	0	1	0	0	0	0	0	0	0	13947	899	31	4		4	SAP30L	5	153826469	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2048836	153826469	27088791	295	44835											
SGCD	6444	broad.mit.edu	37	chr5	156186318	156186318	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaaggtcttcgagatcTgcgtctgcgccaatgggaga	15	9	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156186318	A	A	156186318	3	1	32	1	0	0	0	0	1	0	0	0	14314	1580	55	5	892	5	SGCD	5	156186318	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	2359849	156186318	24728942	296	44836											
ADAM19	8728	broad.mit.edu	37	chr5	156915450	156915450	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agataatctggagggggccgGggaggaggctgggagggctt	22	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156915450	T	T	156915450	2	4	32	1	0	0	0	0	0	0	0	1	240	1219	43	2		2	ADAM19	5	156915450	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	729132	156915450	23999810	297	44837											
ADAM19	8728	broad.mit.edu	37	chr5	156991374	156991374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagacaaaggaggagtcCacttactcattcttctccag	7	10	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156991374	A	A	156991374	1	1	32	0	1	0	0	0	0	0	0	0	240	609	21	2		2	ADAM19	5	156991374	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	75924	156991374	23923886	298	44838											
GABRA1	2554	broad.mit.edu	37	chr5	161302569	161302569	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctatgtttcccttaaggctGacagtgagagctgaatgtcc	10	9	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161302569	A	A	161302569	2	1	32	1	0	0	0	0	0	0	0	1	6220	1277	45	4		4	GABRA1	5	161302569	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	4311195	161302569	19612691	299	44839											
GABRA1	2554	broad.mit.edu	37	chr5	161302738	161302738	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaaaacgcgtagataaggGaatcaagaaaatttaaacag	9	4	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161302738	T	T	161302738	1	4	32	0	1	0	0	0	0	0	0	0	6220	1189	41	3		3	GABRA1	5	161302738	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	169	161302738	19612522	300	44840											
ODZ2	57451	broad.mit.edu	37	chr5	167654946	167654946	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaataatggtaccctgagGgtgatgtatgctaatgggat	13	4	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167654946	A	A	167654946	2	1	32	1	0	0	0	0	0	0	0	1	10930	1223	43	4		4	ODZ2	5	167654946	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	6352208	167654946	13260314	301	44841											
THOC3	84321	broad.mit.edu	37	chr5	175394224	175394234	+	Frame_Shift_Del	DEL	AGCTGGTCCAC	-	-													gattacttggatgccaacaaAgctggtccacactatcccca							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	175394234	-	-	175394224	7	5	32	1	0	1	0	1	0	0	0	0	15989	72	3	0	761	0	THOC3	5	175394224	Frame_Shift_Del	DEL	AGCTGGTCCAC	TCGA-05-5428-01A-01D-1625-08	7739278	175394224	5521036	302	44842											
F12	2161	broad.mit.edu	37	chr5	176832080	176832080	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggccagccgctggcagtgGgcatcaggacccttgcactg	14	14	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176832080	A	A	176832080	2	1	32	1	0	0	0	0	0	0	0	1	5382	1219	43	4		4	F12	5	176832080	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1437856	176832080	4083180	303	44843											
RMND5B	64777	broad.mit.edu	37	chr5	177571094	177571094	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcacttccagccctttgctCggctgcaccagcggggtgag	14	14	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177571094	T	T	177571094	3	4	32	1	0	0	0	0	1	0	0	0	13509	875	31	4	697	4	RMND5B	5	177571094	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	739014	177571094	3344166	304	44844											
FLT4	2324	broad.mit.edu	37	chr5	180038192	180038192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagtgggtcatttaaagCcactctgtgctctgagtttg	11	9	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180038192	A	A	180038192	1	1	32	0	1	0	0	0	0	0	0	0	6002	754	26	3		3	FLT4	5	180038192	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2467098	180038192	877068	305	44845											
EXOC2	55770	broad.mit.edu	37	chr6	553753	553753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcacagtgtcctatacCacgtgctatagcaaggatgc	9	12	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	553753	A	A	553753	1	1	32	0	1	0	0	0	0	0	0	0	5344	609	21	2		2	EXOC2	6	553753	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08		553753	170561314	306	44846											
RREB1	6239	broad.mit.edu	37	chr6	7211137	7211137	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccaagaggaaactgagtCacgatgccgagtcagagaga	12	10	2	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7211137	G	G	7211137	3	3	32	1	0	0	0	0	1	0	0	0	13790	826	29	4	540	4	RREB1	6	7211137	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	6657384	7211137	163903930	307	44847											
GCNT2	2651	broad.mit.edu	37	chr6	10557656	10557656	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaccagccactttttattaGgaagtagaagatgaaaactg	8	6	0	3	rs55736147		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10557656	C	C	10557656	1	2	32	0	1	0	0	0	0	0	0	0	6363	1015	35	4		4	GCNT2	6	10557656	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3346519	10557656	160557411	308	44848											
SYCP2L	221711	broad.mit.edu	37	chr6	10906288	10906288	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacactcttgactgtgggtgGtaagaaattttagaattttc	10	5	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10906288	C	C	10906288	5	2	32	1	0	0	0	0	0	0	1	0	15552	1275	44	4	711	4	SYCP2L	6	10906288	Splice_Site	SNP	G	TCGA-05-5428-01A-01D-1625-08	348632	10906288	160208779	309	44849											
CD83	9308	broad.mit.edu	37	chr6	14135350	14135350	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttttagaagtttgcacgGctacagagtatcttcccaga	8	9	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14135350	T	T	14135350	2	4	32	1	0	0	0	0	0	0	0	1	3071	1190	42	3		3	CD83	6	14135350	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	3229062	14135350	156979717	310	44850											
SLC17A4	10050	broad.mit.edu	37	chr6	25777090	25777090	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgccctgggtcagatccAgccacagcatgaccatgacc	9	17	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25777090	T	T	25777090	3	4	32	1	0	0	0	0	1	0	0	0	14532	188	7	5	1205	5	SLC17A4	6	25777090	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	11641740	25777090	145337977	311	44851											
PRSS16	10279	broad.mit.edu	37	chr6	27216634	27216634	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacctctcagcgttactgGgtgaatgaccaacattgggt	10	12	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27216634	A	A	27216634	4	1	32	1	0	0	0	0	0	1	0	0	12722	1241	43	4	256	4	PRSS16	6	27216634	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1439544	27216634	143898433	312	44852											
OR2B6	26212	broad.mit.edu	37	chr6	27925077	27925077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgctgggtttctcagatcGaccttggctggagtttccac	11	11	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27925077	T	T	27925077	3	4	32	1	0	0	0	0	1	0	0	0	11085	1058	37	3	61	3	OR2B6	6	27925077	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	708443	27925077	143189990	313	44853											
TRIM10	10107	broad.mit.edu	37	chr6	30121975	30121975	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacgaagccccaagccagcCtcacagcccacaccccctcc	6	22	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30121975	T	T	30121975	3	4	32	1	0	0	0	0	1	0	0	0	16610	681	24	4	320	4	TRIM10	6	30121975	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2196898	30121975	140993092	314	44854											
CDSN	1041	broad.mit.edu	37	chr6	31083791	31083791	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggcatgcacacacacaaCagttgacttcttatggactg	8	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31083791	T	T	31083791	1	4	32	0	1	0	0	0	0	0	0	0	3209	493	17	4		4	CDSN	6	31083791	3'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	961816	31083791	140031276	315	44855											
BAT2	7916	broad.mit.edu	37	chr6	31604645	31604645	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccccccagcctggctgtgCggcccccacctgctcctgct	10	21	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31604645	T	T	31604645	3	4	32	1	0	0	0	0	1	0	0	0	1324	759	27	4	6176	4	BAT2	6	31604645	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	520854	31604645	139510422	316	44856											
NOTCH4	4855	broad.mit.edu	37	chr6	32180890	32180890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggttttctcccttctaGgggtctttgggccctgctca	13	11	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32180890	T	T	32180890	1	4	32	0	1	0	0	0	0	0	0	0	10646	1015	35	2		2	NOTCH4	6	32180890	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	576245	32180890	138934177	317	44857											
TAP2	6891	broad.mit.edu	37	chr6	32797239	32797239	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggatgaggacccgcgggtCtcgtacaagggcccgggcaa	16	12	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32797239	T	T	32797239	3	4	32	1	0	0	0	0	1	0	0	0	15670	913	32	4	283	4	TAP2	6	32797239	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	616349	32797239	138317828	318	44858											
TAP2	6891	broad.mit.edu	37	chr6	32797559	32797559	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagggaggctgaagaattCagtgtgtggggaaggagacg	19	3	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32797559	T	T	32797559	1	4	32	0	1	0	0	0	0	0	0	0	15670	841	29	4		4	TAP2	6	32797559	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	320	32797559	138317508	319	44859											
COL11A2	1302	broad.mit.edu	37	chr6	33156987	33156987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaaccgagagagatacaCacagagtgagaggcaaaggg	14	6	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33156987	A	A	33156987	1	1	32	0	1	0	0	0	0	0	0	0	3700	493	17	3		3	COL11A2	6	33156987	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	359428	33156987	137958080	320	44860											
TREML1	340205	broad.mit.edu	37	chr6	41121752	41121752	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttgacatcctggagcctGtagtggcactgcaccagaat	11	11	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41121752	A	A	41121752	2	1	32	1	0	0	0	0	0	0	0	1	16596	1372	48	4		4	TREML1	6	41121752	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	7964765	41121752	129993315	321	44861											
ZNF318	24149	broad.mit.edu	37	chr6	43304967	43304967	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctgttcaggcattccctGagggaccatattgtcttcaa	8	11	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43304967	C	C	43304967	3	2	32	1	0	0	0	0	1	0	0	0	17962	1299	45	4	74	4	ZNF318	6	43304967	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2183215	43304967	127810100	322	44862											
AARS2	57505	broad.mit.edu	37	chr6	44274315	44274315	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtgaaaggcaaccaacCcacccccacctccccaccct	6	20	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44274315	G	G	44274315	1	3	32	0	1	0	0	0	0	0	0	0	20	638	22	4		4	AARS2	6	44274315	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	969348	44274315	126840752	323	44863											
GPR116	221395	broad.mit.edu	37	chr6	46849193	46849193	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctaaacaatttcacttactGatagtaactgcttgaaagga	6	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46849193	A	A	46849193	2	1	32	1	0	0	0	0	0	0	0	1	6698	1304	45	4		4	GPR116	6	46849193	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	2574878	46849193	124265874	324	44864											
DEFB110	245913	broad.mit.edu	37	chr6	49986889	49986889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctagctatgacacatcCatgttttaaaaggagaaagt	7	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49986889	A	A	49986889	1	1	32	0	1	0	0	0	0	0	0	0	4439	609	21	2		2	DEFB110	6	49986889	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3137696	49986889	121128178	325	44865											
TMEM14A	28978	broad.mit.edu	37	chr6	52546783	52546783	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttttgataccctatgctaGatatactagaacatatttag	5	7	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52546783	C	C	52546783	1	2	32	0	1	0	0	0	0	0	0	0	16186	957	33	4		4	TMEM14A	6	52546783	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2559894	52546783	118568284	326	44866											
ICK	22858	broad.mit.edu	37	chr6	52878687	52878687	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaggtgggcctgccttttCcaggatgcctttctgtggtt	14	9	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52878687	T	T	52878687	3	4	32	1	0	0	0	0	1	0	0	0	7554	864	30	4	997	4	ICK	6	52878687	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	331904	52878687	118236380	327	44867											
DST	667	broad.mit.edu	37	chr6	56468298	56468298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaacatagaagtgttctgCttctttttcccagtcataca	6	9	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468298	A	A	56468298	1	1	32	0	1	0	0	0	0	0	0	0	4823	812	28	3		3	DST	6	56468298	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3589611	56468298	114646769	328	44868											
ZNF451	26036	broad.mit.edu	37	chr6	57011930	57011930	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgtagctgtagctgagaaGagcattacccaggttgcaga	12	9	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57011930	C	C	57011930	3	2	32	1	0	0	0	0	1	0	0	0	18049	933	33	4	1085	4	ZNF451	6	57011930	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	543632	57011930	114103137	329	44869											
KHDRBS2	202559	broad.mit.edu	37	chr6	62757846	62757846	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagcacctgtttcttcctgTagcctcttcaaggagtttcc	7	12	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62757846	A	A	62757846	2	1	32	1	0	0	0	0	0	0	0	1	8217	1625	57	5		5	KHDRBS2	6	62757846	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	5745916	62757846	108357221	330	44870											
EYS	346007	broad.mit.edu	37	chr6	66115113	66115113	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattctgacatggtactaatGaaaactcactgacatcagtt	6	9	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66115113	A	A	66115113	3	1	32	1	0	0	0	0	1	0	0	0	5375	1294	45	4	8538	4	EYS	6	66115113	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3357267	66115113	104999954	331	44871											
KCNQ5	56479	broad.mit.edu	37	chr6	73765390	73765390	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaacagcctctggggcactGacaagcatctgaagggtctc	12	12	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73765390	A	A	73765390	1	1	32	0	1	0	0	0	0	0	0	0	8156	1305	45	4		4	KCNQ5	6	73765390	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	7650277	73765390	97349677	332	44872											
COL12A1	1303	broad.mit.edu	37	chr6	75799844	75799844	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcgttccccagggggtcCctgcatccctggtgtgcccg	12	17	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75799844	A	A	75799844	4	1	32	1	0	0	0	0	0	1	0	0	3701	632	22	2	284	2	COL12A1	6	75799844	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2034454	75799844	95315223	333	44873											
ZNF292	23036	broad.mit.edu	37	chr6	87964599	87964599	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcagccagaccagaaatatGatgaagagaatcttccaata	7	8	2	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87964599	A	A	87964599	3	1	32	1	0	0	0	0	1	0	0	0	17952	1290	45	4	1282	4	ZNF292	6	87964599	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	12164755	87964599	83150468	334	44874											
PM20D2	135293	broad.mit.edu	37	chr6	89862832	89862832	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaaggattaaatgcattaGatgctgctgtgctggcctat	13	6	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89862832	C	C	89862832	3	2	32	1	0	0	0	0	1	0	0	0	12224	942	33	4	695	4	PM20D2	6	89862832	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1898233	89862832	81252235	335	44875											
CASP8AP2	9994	broad.mit.edu	37	chr6	90573971	90573971	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgagcattgaccttaAtcacctgagacctattccag	8	10	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90573971	G	G	90573971	3	3	32	1	0	0	0	0	1	0	0	0	2704	101	4	5	2565	5	CASP8AP2	6	90573971	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	711139	90573971	80541096	336	44876											
EPHA7	2045	broad.mit.edu	37	chr6	94124584	94124584	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatataactatcactatatGacttaagatctgtagttatt	4	6	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94124584	A	A	94124584	1	1	32	0	1	0	0	0	0	0	0	0	5214	1305	45	4		4	EPHA7	6	94124584	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3550613	94124584	76990483	337	44877											
C6orf168	84553	broad.mit.edu	37	chr6	99739831	99739831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcgaaatacatgcacaCccttttgcttaaaaaaaaat	4	8	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99739831	A	A	99739831	1	1	32	0	1	0	0	0	0	0	0	0	2366	522	18	3		3	C6orf168	6	99739831	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5615247	99739831	71375236	338	44878											
GRIK2	2898	broad.mit.edu	37	chr6	102266270	102266270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtgggatccagccagtgGcctgaatatgacagaaagtc	12	9	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102266270	T	T	102266270	3	4	32	1	0	0	0	0	1	0	0	0	6840	1203	42	3	1263	3	GRIK2	6	102266270	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2526439	102266270	68848797	339	44879											
LIN28B	389421	broad.mit.edu	37	chr6	105526436	105526436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacccgcgagttctcaGggaagacaggaagcagaatc	12	12	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105526436	T	T	105526436	3	4	32	1	0	0	0	0	1	0	0	0	8879	991	35	2	545	2	LIN28B	6	105526436	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3260166	105526436	65588631	340	44880											
WASF1	8936	broad.mit.edu	37	chr6	110424697	110424697	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctagtcagaagctcactcatCtgactaaatggcaaggcaga	9	10	4	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110424697	A	A	110424697	3	1	32	1	0	0	0	0	1	0	0	0	17379	912	32	3	914	3	WASF1	6	110424697	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	4898261	110424697	60690370	341	44881											
PTPRK	5796	broad.mit.edu	37	chr6	128304170	128304170	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttgtactagttttagtatCacttttctgtcatcaaagtt	5	6	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128304170	G	G	128304170	1	3	32	0	1	0	0	0	0	0	0	0	12913	841	29	4		4	PTPRK	6	128304170	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	17879473	128304170	42810897	342	44882											
UTRN	7402	broad.mit.edu	37	chr6	144750710	144750710	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggttcttatattcttccaCttttagatgttgccgttcag	7	9	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144750710	G	G	144750710	1	3	32	0	1	0	0	0	0	0	0	0	17230	580	20	4		4	UTRN	6	144750710	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	16446540	144750710	26364357	343	44883											
SHPRH	257218	broad.mit.edu	37	chr6	146261794	146261794	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaggttaagcataacaaTacttttctctctaaaaaatg	5	7	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146261794	A	A	146261794	1	1	32	0	1	0	0	0	0	0	0	0	14404	1421	49	5		5	SHPRH	6	146261794	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	1511084	146261794	24853273	344	44884											
RAET1G	353091	broad.mit.edu	37	chr6	150240366	150240366	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttctgagtcaaagaggagGaagatctgtccatcgaaact	10	7	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150240366	A	A	150240366	2	1	32	1	0	0	0	0	0	0	0	1	13108	1165	41	4		4	RAET1G	6	150240366	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	3978572	150240366	20874701	345	44885											
CYP2W1	54905	broad.mit.edu	37	chr7	1027006	1027006	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcaggaggagctagacCgcgtgctgggccctgggcgg	21	10	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1027006	T	T	1027006	3	4	32	1	0	0	0	0	1	0	0	0	4209	652	23	4	1008	4	CYP2W1	7	1027006	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08		1027006	158111657	346	44886											
ZFAND2A	90637	broad.mit.edu	37	chr7	1197219	1197219	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttagccatacgtcgctagtCcctaccataccagcaagaca	7	14	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1197219	A	A	1197219	1	1	32	0	1	0	0	0	0	0	0	0	17753	870	30	3		3	ZFAND2A	7	1197219	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	170213	1197219	157941444	347	44887											
FTSJ2	29960	broad.mit.edu	37	chr7	2279093	2279093	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctgcaccgccacctgactCcaggccccaggagctgcccc	9	20	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2279093	T	T	2279093	4	4	32	1	0	0	0	0	0	1	0	0	6148	856	30	4	490	4	FTSJ2	7	2279093	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1081874	2279093	156859570	348	44888											
SNX8	29886	broad.mit.edu	37	chr7	2297589	2297589	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggtctgcagggggcccCcttccccaccagcccaccca	10	21	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2297589	T	T	2297589	1	4	32	0	1	0	0	0	0	0	0	0	15022	638	22	4		4	SNX8	7	2297589	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	18496	2297589	156841074	349	44889											
CARD11	84433	broad.mit.edu	37	chr7	2949749	2949749	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggggtagatgttggacttGatcaagtctcttgtgcagcc	13	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2949749	C	C	2949749	3	2	32	1	0	0	0	0	1	0	0	0	2671	1280	45	4	277	4	CARD11	7	2949749	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	652160	2949749	156188914	350	44890											
CARD11	84433	broad.mit.edu	37	chr7	2984041	2984041	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcgtcagcgtcatctgcttCttctcatcctccagctgccg	8	17	5	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2984041	G	G	2984041	3	3	32	1	0	0	0	0	1	0	0	0	2671	912	32	4	3059	4	CARD11	7	2984041	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	34292	2984041	156154622	351	44891											
RSPH10B2	728194	broad.mit.edu	37	chr7	6000522	6000522	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaacggccatggggtgacAgaaggaagtgttggggggtg	20	5	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6000522	G	G	6000522	1	3	32	0	1	0	0	0	0	0	0	0	13815	203	7	5		5	RSPH10B2	7	6000522	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	3016481	6000522	153138141	352	44892											
KDELR2	11014	broad.mit.edu	37	chr7	6502740	6502740	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaattctgtccgagcaccctGaaggacagatgctggtgatg	13	9	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6502740	A	A	6502740	1	1	32	0	1	0	0	0	0	0	0	0	8190	1299	45	4		4	KDELR2	7	6502740	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	502218	6502740	152635923	353	44893											
THSD7A	221981	broad.mit.edu	37	chr7	11415466	11415466	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaaggttaaaggtttcagTcggttgttttgccttctttg	11	6	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11415466	A	A	11415466	2	1	32	1	0	0	0	0	0	0	0	1	16002	1654	58	5		5	THSD7A	7	11415466	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	4912726	11415466	147723197	354	44894											
THSD7A	221981	broad.mit.edu	37	chr7	11676463	11676463	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaattctgctggttatTgggtctctcggcctgcttac	10	10	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11676463	A	A	11676463	3	1	32	1	0	0	0	0	1	0	0	0	16002	1812	63	5	4761	5	THSD7A	7	11676463	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	260997	11676463	147462200	355	44895											
TWISTNB	221830	broad.mit.edu	37	chr7	19738102	19738102	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctggtcctgaacttccTggtgctttttcttcttcttc	8	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19738102	C	C	19738102	3	2	32	1	0	0	0	0	1	0	0	0	16910	1580	55	5	166	5	TWISTNB	7	19738102	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	8061639	19738102	139400561	356	44896											
OSBPL3	26031	broad.mit.edu	37	chr7	24846359	24846359	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttttgtaaagggttttaCatctctggagagaaaaatct	8	5	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24846359	A	A	24846359	1	1	32	0	1	0	0	0	0	0	0	0	11373	493	17	3		3	OSBPL3	7	24846359	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5108257	24846359	134292304	357	44897											
HOXA3	3200	broad.mit.edu	37	chr7	27148281	27148282	+	Frame_Shift_Del	DEL	GC	-	-													tgcgcgctcgtgtaggccgtGcgcgcgcgcttggacgaagc							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27148282	-	-	27148281	7	5	32	1	0	1	0	1	0	0	0	0	7360	1306	46	0	750	0	HOXA3	7	27148281	Frame_Shift_Del	DEL	GC	TCGA-05-5428-01A-01D-1625-08	2301922	27148281	131990382	358	44898											
BMPER	168667	broad.mit.edu	37	chr7	34118549	34118549	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaactttcaggggacgtgtCagtacgttttgacaaaagac	10	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34118549	A	A	34118549	3	1	32	1	0	0	0	0	1	0	0	0	1474	827	29	3	1205	3	BMPER	7	34118549	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	6970268	34118549	125020114	359	44899											
AOAH	313	broad.mit.edu	37	chr7	36561669	36561669	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggtggaatccatccacGggctcgatgagctgccaggg	16	10	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36561669	T	T	36561669	2	4	32	1	0	0	0	0	0	0	0	1	728	1103	39	1		1	AOAH	7	36561669	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	2443120	36561669	122576994	360	44900											
ELMO1	9844	broad.mit.edu	37	chr7	37252839	37252839	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataataaaatgacatcatatCaaactctgaaactccctagt	3	9	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37252839	G	G	37252839	1	3	32	0	1	0	0	0	0	0	0	0	5107	841	29	4		4	ELMO1	7	37252839	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	691170	37252839	121885824	361	44901											
C7orf36	57002	broad.mit.edu	37	chr7	39609962	39609962	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagcatagtctgctttAgttatattgttatgccatat	9	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39609962	T	T	39609962	1	4	32	0	1	0	0	0	0	0	0	0	2415	435	15	5		5	C7orf36	7	39609962	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	2357123	39609962	119528701	362	44902											
C7orf10	79783	broad.mit.edu	37	chr7	40723642	40723643	+	Intron	DNP	TG	CT	CT													gaggtctctgttttctttgcTggttgtcaatagaacgctgt							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	40723643	CT	CT	40723642	1	2	32	0	1	0	0	0	0	0	0	0	2401	1595	55	5		5	C7orf10	7	40723642	Intron	DNP	TG	TCGA-05-5428-01A-01D-1625-08	1113680	40723642	118415021	363	44903											
INHBA	3624	broad.mit.edu	37	chr7	41730176	41730176	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcataagagaaaacaggcaCacctgttaattccaacattt	6	9	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41730176	A	A	41730176	1	1	32	0	1	0	0	0	0	0	0	0	7811	493	17	3		3	INHBA	7	41730176	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1006534	41730176	117408487	364	44904											
HECW1	23072	broad.mit.edu	37	chr7	43484721	43484721	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcccaggatggcgacacGcaccccagcaccgggagcga	15	16	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43484721	T	T	43484721	2	4	32	1	0	0	0	0	0	0	0	1	7109	1074	38	3		3	HECW1	7	43484721	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1754545	43484721	115653942	365	44905											
ZMIZ2	83637	broad.mit.edu	37	chr7	44804118	44804118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcgtgtgatggaggagGggctggtgcttttagaggct	19	5	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44804118	T	T	44804118	1	4	32	0	1	0	0	0	0	0	0	0	17823	1247	43	2		2	ZMIZ2	7	44804118	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1319397	44804118	114334545	366	44906											
GRB10	2887	broad.mit.edu	37	chr7	50673020	50673020	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctcctccagggctgcgctCtgggcctctgccggattctc	11	18	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50673020	A	A	50673020	3	1	32	1	0	0	0	0	1	0	0	0	6822	912	32	3	448	3	GRB10	7	50673020	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5868902	50673020	108465643	367	44907											
POM121L12	285877	broad.mit.edu	37	chr7	53103542	53103542	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcccctgaggtccctgactCagagccatattcagtacttc	9	14	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103542	A	A	53103542	3	1	32	1	0	0	0	0	1	0	0	0	12336	827	29	3	180	3	POM121L12	7	53103542	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2430522	53103542	106035121	368	44908											
SEPT14	346288	broad.mit.edu	37	chr7	55863778	55863778	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaagatgctcgaacttgTcctgcagctgtgaaaccaat	8	9	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55863778	A	A	55863778	3	1	32	1	0	0	0	0	1	0	0	0	14176	1667	58	5	175	5	SEPT14	7	55863778	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	2760236	55863778	103274885	369	44909											
ELN	2006	broad.mit.edu	37	chr7	73470540	73470540	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccaatccatcagcatccctCagagcccgcccagcctctct	5	21	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73470540	T	T	73470540	1	4	32	0	1	0	0	0	0	0	0	0	5113	841	29	4		4	ELN	7	73470540	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	17606762	73470540	85668123	370	44910											
ELN	2006	broad.mit.edu	37	chr7	73470873	73470873	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatcgggcttgaatgtgctCagggaggagttgggggagaa	19	4	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73470873	G	G	73470873	1	3	32	0	1	0	0	0	0	0	0	0	5113	841	29	4		4	ELN	7	73470873	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	333	73470873	85667790	371	44911											
CCL26	10344	broad.mit.edu	37	chr7	75399118	75399118	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtagtgaatctgtgaaaaaGagacacggataagtcaatat	11	4	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75399118	C	C	75399118	1	2	32	0	1	0	0	0	0	0	0	0	2926	957	33	4		4	CCL26	7	75399118	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1928245	75399118	83739545	372	44912											
SEMA3C	10512	broad.mit.edu	37	chr7	80427497	80427497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaaaggcccattaaacaCagtctgtatatcagataaat	7	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80427497	A	A	80427497	3	1	32	1	0	0	0	0	1	0	0	0	14139	478	17	3	1245	3	SEMA3C	7	80427497	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5028379	80427497	78711166	373	44913											
HGF	3082	broad.mit.edu	37	chr7	81346567	81346567	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacgagaaatagggcaataAtcccaaggaatgagtggatt	11	6	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81346567	T	T	81346567	3	4	32	1	0	0	0	0	1	0	0	0	7152	98	4	5	832	5	HGF	7	81346567	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	919070	81346567	77792096	374	44914											
CACNA2D1	781	broad.mit.edu	37	chr7	81579841	81579841	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctgttgttaaaaaaaaAagaaaagaacagaaaaagaa	6	5	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81579841	G	G	81579841	1	3	32	0	1	0	0	0	0	0	0	0	2574	29	1	5		5	CACNA2D1	7	81579841	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	233274	81579841	77558822	375	44915											
SEMA3A	10371	broad.mit.edu	37	chr7	83590774	83590774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcttccatttgttactGttccctggggtatgtcctgg	11	9	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83590774	T	T	83590774	3	4	32	1	0	0	0	0	1	0	0	0	14137	1368	48	3	90	3	SEMA3A	7	83590774	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2010933	83590774	75547889	376	44916											
SEMA3A	10371	broad.mit.edu	37	chr7	83636694	83636694	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggccgtggataggggactCttccttgataaggcacccat	12	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83636694	T	T	83636694	3	4	32	1	0	0	0	0	1	0	0	0	14137	913	32	4	1232	4	SEMA3A	7	83636694	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	45920	83636694	75501969	377	44917											
CROT	54677	broad.mit.edu	37	chr7	87011402	87011402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcagggttcagagaagGtacgagatataccacttcca	9	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87011402	T	T	87011402	3	4	32	1	0	0	0	0	1	0	0	0	3926	1261	44	3	1201	3	CROT	7	87011402	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3374708	87011402	72127261	378	44918											
ZAN	7455	broad.mit.edu	37	chr7	100334234	100334234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggctccaccggggcccccGgggggtaccctaacggaggt	16	16	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100334234	A	A	100334234	3	1	32	1	0	0	0	0	1	0	0	0	17640	1116	39	4	245	4	ZAN	7	100334234	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	13322832	100334234	58804429	379	44919											
SLC12A9	56996	broad.mit.edu	37	chr7	100459433	100459433	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccccagctgctgctcctGgtggggaacccccggggcgc	16	17	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100459433	T	T	100459433	2	4	32	1	0	0	0	0	0	0	0	1	14503	1335	47	2		2	SLC12A9	7	100459433	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	125199	100459433	58679230	380	44920											
CUX1	1523	broad.mit.edu	37	chr7	101870761	101870761	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagccctgtccccccatcgAggcgagcaaggacagcaagc	12	16	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101870761	G	G	101870761	3	3	32	1	0	0	0	0	1	0	0	0	4097	304	11	5	3394	5	CUX1	7	101870761	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	1411328	101870761	57267902	381	44921											
FBXL13	222235	broad.mit.edu	37	chr7	102553704	102553704	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaagtattatacttccgTtgttctctcaaatctttctt	5	8	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102553704	C	C	102553704	1	2	32	0	1	0	0	0	0	0	0	0	5766	1740	60	5		5	FBXL13	7	102553704	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	682943	102553704	56584959	382	44922											
LAMB4	22798	broad.mit.edu	37	chr7	107732801	107732801	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgttagaataagcacctcCaatatcacagtcacagggag	8	11	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107732801	T	T	107732801	3	4	32	1	0	0	0	0	1	0	0	0	8685	603	21	4	3842	4	LAMB4	7	107732801	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5179097	107732801	51405862	383	44923											
NRCAM	4897	broad.mit.edu	37	chr7	107872665	107872665	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaagtcagaatattggaaGcaatgccactgctttgttga	9	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107872665	A	A	107872665	1	1	32	0	1	0	0	0	0	0	0	0	10739	986	34	4		4	NRCAM	7	107872665	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	139864	107872665	51265998	384	44924											
IFRD1	3475	broad.mit.edu	37	chr7	112096172	112096172	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggaaactccattctgtgtGagtctatgcttgatcttagt	9	8	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112096172	T	T	112096172	1	4	32	0	1	0	0	0	0	0	0	0	7623	1305	45	3		3	IFRD1	7	112096172	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	4223507	112096172	47042491	385	44925											
FOXP2	93986	broad.mit.edu	37	chr7	114270119	114270119	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttaagaaggggctttgagCggcaagaatagtcttagatc	13	5	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114270119	T	T	114270119	1	4	32	0	1	0	0	0	0	0	0	0	6087	783	27	4		4	FOXP2	7	114270119	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2173947	114270119	44868544	386	44926											
PTPRZ1	5803	broad.mit.edu	37	chr7	121679719	121679719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgaataagcgatagaacCaagaaagggtaaaaagcata	10	4	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121679719	A	A	121679719	1	1	32	0	1	0	0	0	0	0	0	0	12922	609	21	2		2	PTPRZ1	7	121679719	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	7409600	121679719	37458944	387	44927											
PTPRZ1	5803	broad.mit.edu	37	chr7	121681017	121681017	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgccatgcagtggggcctGttgtcgtccactgcaggtga	15	11	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121681017	C	C	121681017	3	2	32	1	0	0	0	0	1	0	0	0	12922	1377	48	4	5867	4	PTPRZ1	7	121681017	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1298	121681017	37457646	388	44928											
AASS	10157	broad.mit.edu	37	chr7	121756792	121756792	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatgacgacttaacacCgtcccatacacttttctgag	7	11	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121756792	T	T	121756792	2	4	32	1	0	0	0	0	0	0	0	1	24	639	23	4		4	AASS	7	121756792	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	75775	121756792	37381871	389	44929											
FLNC	2318	broad.mit.edu	37	chr7	128487939	128487939	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatagaatggccggggcagGgaggagggaggtggggcggg	25	4	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128487939	A	A	128487939	1	1	32	0	1	0	0	0	0	0	0	0	5993	1247	43	4		4	FLNC	7	128487939	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	6731147	128487939	30650724	390	44930											
PLXNA4	91584	broad.mit.edu	37	chr7	131831322	131831322	+	Frame_Shift_Del	DEL	G	-	-													agacaccatcttgctcccccGgtccccctccttctggtctc							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131831322	-	-	131831322	7	5	32	1	0	1	0	1	0	0	0	0	12217	1115	39	0	702	0	PLXNA4	7	131831322	Frame_Shift_Del	DEL	G	TCGA-05-5428-01A-01D-1625-08	3343383	131831322	27307341	391	44931											
FAM180A	389558	broad.mit.edu	37	chr7	135433360	135433360	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaggtgaaaaatcgaccctCaagcccagtggaaccccagt	9	12	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135433360	G	G	135433360	1	3	32	0	1	0	0	0	0	0	0	0	5552	841	29	4		4	FAM180A	7	135433360	5'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	3602038	135433360	23705303	392	44932											
SLC37A3	84255	broad.mit.edu	37	chr7	140051040	140051040	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcacgggctctcatacctCcctggctgtggtaagatgta	11	11	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140051040	A	A	140051040	1	1	32	0	1	0	0	0	0	0	0	0	14713	870	30	3		3	SLC37A3	7	140051040	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4617680	140051040	19087623	393	44933											
BRAF	673	broad.mit.edu	37	chr7	140453155	140453155	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactgtagctagaccaaaatCacctatttttactgtgaggt	7	9	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140453155	T	T	140453155	3	4	32	1	0	0	0	0	1	0	0	0	1505	826	29	4	536	4	BRAF	7	140453155	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	402115	140453155	18685508	394	44934											
EPHB6	2051	broad.mit.edu	37	chr7	142565423	142565423	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcggctccatcctgggggCtttggccttcctcctgctgg	13	14	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142565423	G	G	142565423	3	3	32	1	0	0	0	0	1	0	0	0	5220	797	28	4	1838	4	EPHB6	7	142565423	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2112268	142565423	16573240	395	44935											
EPHB6	2051	broad.mit.edu	37	chr7	142565468	142565468	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaccgtgctggcggtcgTcttccagcggtgagtcccca	12	15	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142565468	G	G	142565468	3	3	32	1	0	0	0	0	1	0	0	0	5220	1667	58	5	1883	5	EPHB6	7	142565468	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	45	142565468	16573195	396	44936											
TRPV5	56302	broad.mit.edu	37	chr7	142626750	142626750	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accatccctctcaggaggttCctgatagatctttgctagac	8	12	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142626750	A	A	142626750	1	1	32	0	1	0	0	0	0	0	0	0	16724	870	30	3		3	TRPV5	7	142626750	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	61282	142626750	16511913	397	44937											
CLCN1	1180	broad.mit.edu	37	chr7	143047543	143047543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaccagtctcccttccagCtggtggagcagacaaccctg	10	14	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143047543	A	A	143047543	3	1	32	1	0	0	0	0	1	0	0	0	3493	796	28	3	2564	3	CLCN1	7	143047543	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	420793	143047543	16091120	398	44938											
KRBA1	84626	broad.mit.edu	37	chr7	149419891	149419891	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaatttctcctgggaacAgccccttgcaaggcctcatc	9	14	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149419891	C	C	149419891	3	2	32	1	0	0	0	0	1	0	0	0	8510	188	7	5	638	5	KRBA1	7	149419891	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	6372348	149419891	9718772	399	44939											
GIMAP8	155038	broad.mit.edu	37	chr7	150168025	150168025	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgaatgcattctgcagcCaaagtgaagcggaaacatta	9	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150168025	T	T	150168025	1	4	32	0	1	0	0	0	0	0	0	0	6449	609	21	4		4	GIMAP8	7	150168025	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	748134	150168025	8970638	400	44940											
ABP1	26	broad.mit.edu	37	chr7	150554886	150554886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggcttcaacttctatgCggggctgaagggccaggtgc	16	9	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150554886	A	A	150554886	3	1	32	1	0	0	0	0	1	0	0	0	98	768	27	3	1330	3	ABP1	7	150554886	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	386861	150554886	8583777	401	44941											
NOM1	64434	broad.mit.edu	37	chr7	156759124	156759124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcggaggcaccagttacGtccgctctactattttttct	9	11	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156759124	T	T	156759124	1	4	32	0	1	0	0	0	0	0	0	0	10625	1160	40	3		3	NOM1	7	156759124	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	6204238	156759124	2379539	402	44942											
UBE3C	9690	broad.mit.edu	37	chr7	157009540	157009540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagctcacgtgtgtgacgcGgatatgttctttcttttcag	11	9	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157009540	T	T	157009540	1	4	32	0	1	0	0	0	0	0	0	0	17007	1131	39	1		1	UBE3C	7	157009540	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	250416	157009540	2129123	403	44943											
DLGAP2	9228	broad.mit.edu	37	chr8	1574992	1574992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caactccccgaaattccgctCccggaaccagagctacatga	7	16	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1574992	A	A	1574992	3	1	32	1	0	0	0	0	1	0	0	0	4600	855	30	3	1299	3	DLGAP2	8	1574992	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08		1574992	144789030	404	44944											
TNFRSF10D	8793	broad.mit.edu	37	chr8	23003529	23003529	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccctgcccaaagtccctgaGaaggcgtcaggaggacaggc	13	13	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23003529	A	A	23003529	1	1	32	0	1	0	0	0	0	0	0	0	16406	957	33	4		4	TNFRSF10D	8	23003529	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	21428537	23003529	123360493	405	44945											
DOCK5	80005	broad.mit.edu	37	chr8	25136098	25136098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtaggcagcatgaaaccGtgattcctggcgagctcccc	11	12	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25136098	T	T	25136098	3	4	32	1	0	0	0	0	1	0	0	0	4730	1145	40	3	256	3	DOCK5	8	25136098	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2132569	25136098	121227924	406	44946											
UNC5D	137970	broad.mit.edu	37	chr8	35648138	35648138	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggacatttgctttaaatGggaaagaggccgctttctgc	13	7	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35648138	T	T	35648138	1	4	32	0	1	0	0	0	0	0	0	0	17121	1363	47	2		2	UNC5D	8	35648138	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	10512040	35648138	110715884	407	44947											
KCNU1	157855	broad.mit.edu	37	chr8	36746010	36746010	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccatcacgattatcttccAggacctcatcagccacaatg	5	16	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36746010	T	T	36746010	1	4	32	0	1	0	0	0	0	0	0	0	8163	203	7	5		5	KCNU1	8	36746010	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	1097872	36746010	109618012	408	44948											
KCNU1	157855	broad.mit.edu	37	chr8	36788633	36788633	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagctggggcttctgtcCttacacgaaaccattttatc	8	10	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36788633	A	A	36788633	2	1	32	1	0	0	0	0	0	0	0	1	8163	668	24	2		2	KCNU1	8	36788633	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	42623	36788633	109575389	409	44949											
C8orf86	389649	broad.mit.edu	37	chr8	38369847	38369847	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataagaaggaattcctccgCgagggaggggccgggcaaaa	15	8	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38369847	A	A	38369847	1	1	32	0	1	0	0	0	0	0	0	0	2468	783	27	3		3	C8orf86	8	38369847	3'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	1581214	38369847	107994175	410	44950											
ADAM18	8749	broad.mit.edu	37	chr8	39442037	39442037	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggtcctggggcagcacagGgtcctccctggcccaggcgc	16	15	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39442037	C	C	39442037	1	2	32	0	1	0	0	0	0	0	0	0	239	1247	43	4		4	ADAM18	8	39442037	5'Flank	SNP	G	TCGA-05-5428-01A-01D-1625-08	1072190	39442037	106921985	411	44951											
PRKDC	5591	broad.mit.edu	37	chr8	48839832	48839832	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggctgcattacatgtctgtCaatataaattgaccattctt	6	8	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48839832	A	A	48839832	3	1	32	1	0	0	0	0	1	0	0	0	12627	826	29	3	10308	3	PRKDC	8	48839832	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	9397795	48839832	97524190	412	44952											
PXDNL	137902	broad.mit.edu	37	chr8	52322075	52322075	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgcatccagataaattggcGatgaggctgagggagcgcgg	17	7	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52322075	C	C	52322075	3	2	32	1	0	0	0	0	1	0	0	0	12956	1048	37	4	2310	4	PXDNL	8	52322075	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3482243	52322075	94041947	413	44953											
RGS20	8601	broad.mit.edu	37	chr8	54792025	54792025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggcacgaggagctgccgGgccgcctctcgctcctgctc	16	16	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54792025	T	T	54792025	3	4	32	1	0	0	0	0	1	0	0	0	13412	1232	43	2	379	2	RGS20	8	54792025	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2469950	54792025	91571997	414	44954											
RP1	6101	broad.mit.edu	37	chr8	55534941	55534941	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgcttcaatgaccagtttCttccaccacagaaacgaaaa	5	12	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55534941	T	T	55534941	1	4	32	0	1	0	0	0	0	0	0	0	13643	928	32	4		4	RP1	8	55534941	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	742916	55534941	90829081	415	44955											
TOX	9760	broad.mit.edu	37	chr8	59851829	59851829	+	Intron	DEL	C	-	-													gtccttatggtatccctcagCccccaccacaaacaggtaag							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59851829	-	-	59851829	6	5	32	0	1	1	0	1	0	0	0	0	16501	754	26	0		0	TOX	8	59851829	Intron	DEL	C	TCGA-05-5428-01A-01D-1625-08	4316888	59851829	86512193	416	44956											
RDH10	157506	broad.mit.edu	37	chr8	74231418	74231418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgggattgttcagtactGccggagttgaggtttgtcag	14	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74231418	T	T	74231418	3	4	32	1	0	0	0	0	1	0	0	0	13297	1319	46	3	623	3	RDH10	8	74231418	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	14379589	74231418	72132604	417	44957											
SLC26A7	115111	broad.mit.edu	37	chr8	92375685	92375685	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacttgttttattttctatCtgctttaatttcagagcaat	5	6	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92375685	T	T	92375685	1	4	32	0	1	0	0	0	0	0	0	0	14636	928	32	4		4	SLC26A7	8	92375685	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	18144267	92375685	53988337	418	44958											
RAD54B	25788	broad.mit.edu	37	chr8	95390564	95390564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaactgccccacaaagacCttgcttactgatctgccttt	6	14	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95390564	A	A	95390564	3	1	32	1	0	0	0	0	1	0	0	0	13100	681	24	2	381	2	RAD54B	8	95390564	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3014879	95390564	50973458	419	44959											
PTDSS1	9791	broad.mit.edu	37	chr8	97312032	97312032	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctgggcatggtcgtttgCcggtttttagagatgaggac	16	6	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97312032	T	T	97312032	2	4	32	1	0	0	0	0	0	0	0	1	12842	747	26	4		4	PTDSS1	8	97312032	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1921468	97312032	49051990	420	44960											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477365	110477365	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtaatgacagatgtggGggttggagtgcaaagtttgt	16	2	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110477365	A	A	110477365	2	1	32	1	0	0	0	0	0	0	0	1	12067	1219	43	4		4	PKHD1L1	8	110477365	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	13165333	110477365	35886657	421	44961											
CSMD3	114788	broad.mit.edu	37	chr8	113702321	113702321	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccttccaagggttgcaGgcatatgatacccataatac	8	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113702321	T	T	113702321	1	4	32	0	1	0	0	0	0	0	0	0	3980	1015	35	2		2	CSMD3	8	113702321	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3224956	113702321	32661701	422	44962											
CSMD3	114788	broad.mit.edu	37	chr8	114185912	114185912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttttcaaatacactggCtgataacaactctcattttt	3	9	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114185912	A	A	114185912	1	1	32	0	1	0	0	0	0	0	0	0	3980	812	28	3		3	CSMD3	8	114185912	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	483591	114185912	32178110	423	44963											
CSMD3	114788	broad.mit.edu	37	chr8	114326822	114326822	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcctaaagtttgtaggatGaggatgtccatcatataatg	10	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114326822	T	T	114326822	3	4	32	1	0	0	0	0	1	0	0	0	3980	1290	45	3	11024	3	CSMD3	8	114326822	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	140910	114326822	32037200	424	44964											
ENPP2	5168	broad.mit.edu	37	chr8	120613725	120613725	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagggtaaaagcaagcaaaGcatgttgttaggtttcattt	12	4	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120613725	A	A	120613725	1	1	32	0	1	0	0	0	0	0	0	0	5172	986	34	4		4	ENPP2	8	120613725	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	6286903	120613725	25750297	425	44965											
COL14A1	7373	broad.mit.edu	37	chr8	121353458	121353458	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatttttgctgcagaattActggtgctaagaaaaatgtc	9	5	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121353458	G	G	121353458	1	3	32	0	1	0	0	0	0	0	0	0	3703	406	14	5		5	COL14A1	8	121353458	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	739733	121353458	25010564	426	44966											
SNTB1	6641	broad.mit.edu	37	chr8	121706015	121706015	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccggtctctgtggaaggaGaaggactgcgatgacggggg	18	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121706015	A	A	121706015	2	1	32	1	0	0	0	0	0	0	0	1	14986	933	33	4		4	SNTB1	8	121706015	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	352557	121706015	24658007	427	44967											
FAM91A1	157769	broad.mit.edu	37	chr8	124792345	124792345	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtagaaatggtcttttgtCaacataaaaacttgttttaa	6	4	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792345	T	T	124792345	1	4	32	0	1	0	0	0	0	0	0	0	5708	841	29	4		4	FAM91A1	8	124792345	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3086330	124792345	21571677	428	44968											
ADCY8	114	broad.mit.edu	37	chr8	132051897	132051897	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctgaccaccaccaggGcgcagatcactacctcaatg	7	17	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132051897	A	A	132051897	3	1	32	1	0	0	0	0	1	0	0	0	300	1203	42	4	3144	4	ADCY8	8	132051897	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	7259552	132051897	14312125	429	44969											
KHDRBS3	10656	broad.mit.edu	37	chr8	136554827	136554827	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtagcacactacagtgtttCttaacattcaagattaagaa	6	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136554827	T	T	136554827	1	4	32	0	1	0	0	0	0	0	0	0	8218	928	32	4		4	KHDRBS3	8	136554827	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4502930	136554827	9809195	430	44970											
COL22A1	169044	broad.mit.edu	37	chr8	139824060	139824060	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctctccagctgggcaGgagcagttgatggtcttcaa	11	11	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139824060	T	T	139824060	2	4	32	1	0	0	0	0	0	0	0	1	3713	987	35	2		2	COL22A1	8	139824060	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	3269233	139824060	6539962	431	44971											
TRAPPC9	83696	broad.mit.edu	37	chr8	141034235	141034235	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagtaactctctagtttgatCcaccaggaggcaagcggctt	10	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141034235	G	G	141034235	1	3	32	0	1	0	0	0	0	0	0	0	16589	870	30	4		4	TRAPPC9	8	141034235	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1210175	141034235	5329787	432	44972											
CYP11B2	1585	broad.mit.edu	37	chr8	143996109	143996109	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccatagcactgcccgggtCcctggcctcaccgtactgga	10	18	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143996109	A	A	143996109	1	1	32	0	1	0	0	0	0	0	0	0	4179	870	30	3		3	CYP11B2	8	143996109	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2961874	143996109	2367913	433	44973											
MAPK15	225689	broad.mit.edu	37	chr8	144804232	144804232	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcccctttatgtgaccctCaactgtacacaggtccctcc	7	16	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144804232	T	T	144804232	1	4	32	0	1	0	0	0	0	0	0	0	9369	841	29	4		4	MAPK15	8	144804232	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	808123	144804232	1559790	434	44974											
DOCK8	81704	broad.mit.edu	37	chr9	446549	446549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggaacacagtcctgacCactatgcacgccttccccta	7	15	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	446549	A	A	446549	2	1	32	1	0	0	0	0	0	0	0	1	4733	581	21	2		2	DOCK8	9	446549	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08		446549	140766882	435	44975											
VLDLR	7436	broad.mit.edu	37	chr9	2651343	2651343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaataaccttttacatgGcttgtctggacaaaacagct	6	8	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2651343	T	T	2651343	1	4	32	0	1	0	0	0	0	0	0	0	17301	1218	42	3		3	VLDLR	9	2651343	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2204794	2651343	138562088	436	44976											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18574396	18574396	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtaaatggtgaaagatttGaaaattaaggtatgatttca	9	1	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18574396	A	A	18574396	1	1	32	0	1	0	0	0	0	0	0	0	274	1305	45	4		4	ADAMTSL1	9	18574396	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	15923053	18574396	122639035	437	44977											
ELAVL2	1993	broad.mit.edu	37	chr9	23693511	23693511	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacacacatttagcaaacttCagtttttaatttttcccctt	2	10	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23693511	T	T	23693511	1	4	32	0	1	0	0	0	0	0	0	0	5092	841	29	4		4	ELAVL2	9	23693511	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5119115	23693511	117519920	438	44978											
UNC13B	10497	broad.mit.edu	37	chr9	35390130	35390130	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtctgggtaactgtttcTggagacaggtgtggaaacat	13	6	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35390130	C	C	35390130	1	2	32	0	1	0	0	0	0	0	0	0	17111	1595	55	5		5	UNC13B	9	35390130	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	11696619	35390130	105823301	439	44979											
FAM75A2	642265	broad.mit.edu	37	chr9	39361081	39361081	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggccaatgtttccccctAttcacaagagtgagaagtct	8	10	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39361081	T	T	39361081	3	4	32	1	0	0	0	0	1	0	0	0	5671	449	16	5	3333	5	FAM75A2	9	39361081	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	3970951	39361081	101852350	440	44980											
FAM75A5	727905	broad.mit.edu	37	chr9	65508190	65508190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctccgcctccgccctactgGacactgggagacacgatgac	10	17	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65508190	T	T	65508190	3	4	32	1	0	0	0	0	1	0	0	0	5673	1174	41	3	11982	3	FAM75A5	9	65508190	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	26147109	65508190	75705241	441	44981											
PGM5	5239	broad.mit.edu	37	chr9	71098793	71098793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccaggtttgactatgaGgggttggatcccaagacgac	12	10	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71098793	T	T	71098793	3	4	32	1	0	0	0	0	1	0	0	0	11896	991	35	2	1342	2	PGM5	9	71098793	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	5590603	71098793	70114638	442	44982											
ANXA1	301	broad.mit.edu	37	chr9	75775889	75775889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaaaattgactgtctatGgtaattatggcagctttgga	9	5	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75775889	T	T	75775889	1	4	32	0	1	0	0	0	0	0	0	0	714	1363	47	2		2	ANXA1	9	75775889	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	4677096	75775889	65437542	443	44983											
FLJ46321	389763	broad.mit.edu	37	chr9	84607486	84607486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcatccagcgcagatggGgcctgccccgcagaatccat	12	15	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84607486	T	T	84607486	3	4	32	1	0	0	0	0	1	0	0	0	5990	1232	43	2	2115	2	FLJ46321	9	84607486	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	8831597	84607486	56605945	444	44984											
ROR2	4920	broad.mit.edu	37	chr9	94486054	94486072	+	Frame_Shift_Del	DEL	TGCTCTGGGCCCCATCTTC	-	-													ctcctctgcttcctgcacggTgctctgggccccatcttctg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94486072	-	-	94486054	7	5	32	1	0	1	0	1	0	0	0	0	13638	1696	59	0	113	0	ROR2	9	94486054	Frame_Shift_Del	DEL	TGCTCTGGGCCCCATCTTC	TCGA-05-5428-01A-01D-1625-08	9878568	94486054	46727377	445	44985											
NOL8	55035	broad.mit.edu	37	chr9	95076672	95076672	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttagcactcacatctgaCgaattactaatagaaagtga	6	8	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95076672	A	A	95076672	2	1	32	1	0	0	0	0	0	0	0	1	10622	523	19	3		3	NOL8	9	95076672	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	590618	95076672	46136759	446	44986											
WNK2	65268	broad.mit.edu	37	chr9	96061494	96061494	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgggcctccctgtcttcGgacatctgctccggcttagc	11	16	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96061494	T	T	96061494	2	4	32	1	0	0	0	0	0	0	0	1	17505	1103	39	1		1	WNK2	9	96061494	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	984822	96061494	45151937	447	44987											
KIAA1529	57653	broad.mit.edu	37	chr9	100053838	100053838	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtccccccaactgctatgtgGacccatggtcttggccctga	10	15	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100053838	T	T	100053838	1	4	32	0	1	0	0	0	0	0	0	0	8310	1189	41	3		3	KIAA1529	9	100053838	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3992344	100053838	41159593	448	44988											
OR13C5	138799	broad.mit.edu	37	chr9	107361215	107361215	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaattgtaccacaaacacTgtttgtactgcagaattgac	8	9	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107361215	G	G	107361215	2	3	32	1	0	0	0	0	0	0	0	1	11031	1567	55	5		5	OR13C5	9	107361215	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	7307377	107361215	33852216	449	44989											
FKTN	2218	broad.mit.edu	37	chr9	108380278	108380278	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acattattccttatagcaaaGatgttgacctaggaattttt	6	6	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108380278	C	C	108380278	3	2	32	1	0	0	0	0	1	0	0	0	5976	942	33	4	975	4	FKTN	9	108380278	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1019063	108380278	32833153	450	44990											
IKBKAP	8518	broad.mit.edu	37	chr9	111659383	111659383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggacaaggacaactacaCacttcggtttttcaaaggat	9	9	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111659383	A	A	111659383	1	1	32	0	1	0	0	0	0	0	0	0	7680	493	17	3		3	IKBKAP	9	111659383	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3279105	111659383	29554048	451	44991											
PAPPA	5069	broad.mit.edu	37	chr9	118989847	118989847	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggtaagccagccttctGgaagctcattgacaggagga	13	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118989847	A	A	118989847	1	1	32	0	1	0	0	0	0	0	0	0	11526	1363	47	4		4	PAPPA	9	118989847	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	7330464	118989847	22223584	452	44992											
ASTN2	23245	broad.mit.edu	37	chr9	119976440	119976440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaattctgggagtactgaCactcttttattctctcatca	5	11	5	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119976440	A	A	119976440	1	1	32	0	1	0	0	0	0	0	0	0	1069	493	17	3		3	ASTN2	9	119976440	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	986593	119976440	21236991	453	44993											
TLR4	7099	broad.mit.edu	37	chr9	120475528	120475528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagttgatctaccaagCcttgagtttctagatctcag	8	9	4	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120475528	A	A	120475528	3	1	32	1	0	0	0	0	1	0	0	0	16076	738	26	3	1132	3	TLR4	9	120475528	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	499088	120475528	20737903	454	44994											
GPR21	2844	broad.mit.edu	37	chr9	125797349	125797349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttcctttttccactgGggcaaacctggatatcatgg	9	12	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125797349	T	T	125797349	3	4	32	1	0	0	0	0	1	0	0	0	6746	1241	43	2	506	2	GPR21	9	125797349	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	5321821	125797349	15416082	455	44995											
GOLGA2	2801	broad.mit.edu	37	chr9	131020138	131020138	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctaccctctccttcaggtCtgccttctcctgcatgagct	6	17	5	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131020138	G	G	131020138	3	3	32	1	0	0	0	0	1	0	0	0	6616	913	32	4	563	4	GOLGA2	9	131020138	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5222789	131020138	10193293	456	44996											
LAMC3	10319	broad.mit.edu	37	chr9	133945149	133945149	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcttcgagggctacaaatGtgaccgctgccacgacaact	11	12	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133945149	C	C	133945149	3	2	32	1	0	0	0	0	1	0	0	0	8688	1377	48	4	3047	4	LAMC3	9	133945149	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2925011	133945149	7268282	457	44997											
BAT2L1	84726	broad.mit.edu	37	chr9	134353400	134353400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggccatgcagtcctcGggcctcccgagtttgccctt	12	16	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134353400	T	T	134353400	1	4	32	0	1	0	0	0	0	0	0	0	1325	1131	39	1		1	BAT2L1	9	134353400	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	408251	134353400	6860031	458	44998											
C9orf9	11092	broad.mit.edu	37	chr9	135762988	135762988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgatgctgctcttgaggcCccgtgtgtgcctgtggggag	16	10	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135762988	A	A	135762988	1	1	32	0	1	0	0	0	0	0	0	0	2530	638	22	2		2	C9orf9	9	135762988	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1409588	135762988	5450443	459	44999											
C9orf96	169436	broad.mit.edu	37	chr9	136253184	136253184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggtgagcctgcagaagCaccggggcctgggcgtcctt	16	12	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136253184	A	A	136253184	1	1	32	0	1	0	0	0	0	0	0	0	2534	725	25	3		3	C9orf96	9	136253184	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	490196	136253184	4960247	460	45000											
CARD9	64170	broad.mit.edu	37	chr9	139266127	139266127	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctcaggagcccccgctgcGgtgggagccccgctgcccct	14	18	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139266127	A	A	139266127	1	1	32	0	1	0	0	0	0	0	0	0	2678	1131	39	4		4	CARD9	9	139266127	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3012943	139266127	1947304	461	45001											
SDCCAG3	10807	broad.mit.edu	37	chr9	139301807	139301807	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgcagggcgacgtgccGgcagggaccctctcggggtg	19	12	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139301807	A	A	139301807	2	1	32	1	0	0	0	0	0	0	0	1	14071	1103	39	4		4	SDCCAG3	9	139301807	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	35680	139301807	1911624	462	45002											
PNPLA7	375775	broad.mit.edu	37	chr9	140400120	140400120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctctgaagatggcatcCgacttcctgctggccagggt	13	12	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140400120	A	A	140400120	2	1	32	1	0	0	0	0	0	0	0	1	12265	639	23	1		1	PNPLA7	9	140400120	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1098313	140400120	813311	463	45003											
CACNA1B	774	broad.mit.edu	37	chr9	140881222	140881222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccacttcccaagccttccTgttttcctcaggttcaactt	5	15	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140881222	A	A	140881222	1	1	32	0	1	0	0	0	0	0	0	0	2565	1595	55	5		5	CACNA1B	9	140881222	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	481102	140881222	332209	464	45004											
AKR1C2	1646	broad.mit.edu	37	chr10	5040898	5040898	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggttgaagttggacaccccGatggacttggccaatcctgc	12	11	0	1	rs139670873		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5040898	C	C	5040898	3	2	32	1	0	0	0	0	1	0	0	0	470	1048	37	4	502	4	AKR1C2	10	5040898	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08		5040898	130493849	465	45005											
NET1	10276	broad.mit.edu	37	chr10	5495387	5495387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctaaacttctaatgtaGtgctgacctattttttaaat	5	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5495387	T	T	5495387	1	4	32	0	1	0	0	0	0	0	0	0	10433	1044	36	3		3	NET1	10	5495387	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	454489	5495387	130039360	466	45006											
FAM171A1	221061	broad.mit.edu	37	chr10	15255941	15255941	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaaggacgtaggtctcTcgaggtgatctactgatcgc	15	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15255941	A	A	15255941	3	1	32	1	0	0	0	0	1	0	0	0	5535	1551	54	5	1030	5	FAM171A1	10	15255941	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	9760554	15255941	120278806	467	45007											
CUBN	8029	broad.mit.edu	37	chr10	16942702	16942702	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttaaaagtcacgaccagctGattggaacctgactgtattg	10	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16942702	A	A	16942702	4	1	32	1	0	0	0	0	0	1	0	0	4084	1299	45	4	2599	4	CUBN	10	16942702	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1686761	16942702	118592045	468	45008											
CUBN	8029	broad.mit.edu	37	chr10	16949593	16949593	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaatgactttcattgtgtttCctgaagatttaatctcattg	6	6	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16949593	T	T	16949593	3	4	32	1	0	0	0	0	1	0	0	0	4084	855	30	4	3328	4	CUBN	10	16949593	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	6891	16949593	118585154	469	45009											
PLXDC2	84898	broad.mit.edu	37	chr10	20335971	20335971	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttggacattcagggttcaTtttacctactgtgaaaaaat	8	6	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20335971	A	A	20335971	1	1	32	0	1	0	0	0	0	0	0	0	12213	1508	52	5		5	PLXDC2	10	20335971	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	3386378	20335971	115198776	470	45010											
GAD2	2572	broad.mit.edu	37	chr10	26589661	26589661	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcttgctgttgggttctttGactcaggggagagtcccagg	15	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26589661	A	A	26589661	1	1	32	0	1	0	0	0	0	0	0	0	6240	1305	45	4		4	GAD2	10	26589661	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	6253690	26589661	108945086	471	45011											
MKX	283078	broad.mit.edu	37	chr10	28023610	28023610	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcctcactggcccgtgactCtggcctcactcccgctttga	9	17	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28023610	G	G	28023610	3	3	32	1	0	0	0	0	1	0	0	0	9703	922	32	4	457	4	MKX	10	28023610	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1433949	28023610	107511137	472	45012											
OR13A1	79290	broad.mit.edu	37	chr10	45798999	45798999	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtacagcaggccagccAacttgctcttccctgcgctg	10	15	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45798999	T	T	45798999	4	4	32	1	0	0	0	0	0	1	0	0	11027	131	5	5	118	5	OR13A1	10	45798999	Nonsense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	17775389	45798999	89735748	473	45013											
RBP3	5949	broad.mit.edu	37	chr10	48390446	48390446	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaactcccccatcatgctCagcacctcctggcccgggac	9	18	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48390446	A	A	48390446	2	1	32	1	0	0	0	0	0	0	0	1	13265	813	29	3		3	RBP3	10	48390446	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	2591447	48390446	87144301	474	45014											
PGBD3	267004	broad.mit.edu	37	chr10	50723384	50723384	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtggtgacacctgctattCagtgtgatattcaacggaac	11	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50723384	T	T	50723384	3	4	32	1	0	0	0	0	1	0	0	0	11877	835	29	4	8	4	PGBD3	10	50723384	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2332938	50723384	84811363	475	45015											
OGDHL	55753	broad.mit.edu	37	chr10	50944252	50944252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaacaaaggagcatagCcagaggaggggcggtatgtc	16	7	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50944252	A	A	50944252	1	1	32	0	1	0	0	0	0	0	0	0	10935	754	26	3		3	OGDHL	10	50944252	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	220868	50944252	84590495	476	45016											
ZWINT	11130	broad.mit.edu	37	chr10	58118196	58118196	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtcatggcaaatttacatCtccagcaggttgtagaccaa	8	9	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58118196	T	T	58118196	3	4	32	1	0	0	0	0	1	0	0	0	18378	913	32	4	20	4	ZWINT	10	58118196	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	7173944	58118196	77416551	477	45017											
SLC16A9	220963	broad.mit.edu	37	chr10	61424037	61424037	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatcgtcaaaatactggcaCgtaatggtcactgttgcagt	10	9	2	0	rs2306162		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61424037	A	A	61424037	2	1	32	1	0	0	0	0	0	0	0	1	14528	523	19	3		3	SLC16A9	10	61424037	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	3305841	61424037	74110710	478	45018											
KIAA1274	27143	broad.mit.edu	37	chr10	72292514	72292514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggtgtacaagcggccCctcttcctgcagcccaccta	11	15	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72292514	A	A	72292514	2	1	32	1	0	0	0	0	0	0	0	1	8290	610	22	2		2	KIAA1274	10	72292514	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	10868477	72292514	63242233	479	45019											
KIAA1274	27143	broad.mit.edu	37	chr10	72300942	72300942	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcagctgcctcagcggcCagggccgtaccacaactgcg	12	15	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72300942	T	T	72300942	4	4	32	1	0	0	0	0	0	1	0	0	8290	595	21	4	2051	4	KIAA1274	10	72300942	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	8428	72300942	63233805	480	45020											
CCDC109A	90550	broad.mit.edu	37	chr10	74619187	74619187	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacatacatacaccacacaCgtagctacaaaagaacccta	3	14	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74619187	G	G	74619187	1	3	32	0	1	0	0	0	0	0	0	0	2770	551	19	4		4	CCDC109A	10	74619187	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2318245	74619187	60915560	481	45021											
PLAU	5328	broad.mit.edu	37	chr10	75672093	75672093	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaataggtatggggatctCcactgcaactgggagagaaa	13	6	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75672093	A	A	75672093	1	1	32	0	1	0	0	0	0	0	0	0	12117	870	30	3		3	PLAU	10	75672093	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1052906	75672093	59862654	482	45022											
DLG5	9231	broad.mit.edu	37	chr10	79590564	79590564	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccgtgtcaatggccgagtCgtgggagctgtgggccatca	15	10	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79590564	T	T	79590564	3	4	32	1	0	0	0	0	1	0	0	0	4598	884	31	4	4035	4	DLG5	10	79590564	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3918471	79590564	55944183	483	45023											
GRID1	2894	broad.mit.edu	37	chr10	87615902	87615902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcttcctgtgaaaggCgttggccagcatcagaacac	10	13	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87615902	A	A	87615902	3	1	32	1	0	0	0	0	1	0	0	0	6837	768	27	3	2072	3	GRID1	10	87615902	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	8025338	87615902	47918845	484	45024											
ANKRD1	27063	broad.mit.edu	37	chr10	92680673	92680673	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagttcccttgcattacaCctgaaagcaaagggcatttc	8	11	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92680673	T	T	92680673	1	4	32	0	1	0	0	0	0	0	0	0	637	522	18	4		4	ANKRD1	10	92680673	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5064771	92680673	42854074	485	45025											
CYP2C9	1559	broad.mit.edu	37	chr10	96748521	96748521	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagttattgcatattctgTttgtgccagttacagagaca	8	7	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96748521	C	C	96748521	1	2	32	0	1	0	0	0	0	0	0	0	4201	1740	60	5		5	CYP2C9	10	96748521	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	4067848	96748521	38786226	486	45026											
OPALIN	93377	broad.mit.edu	37	chr10	98105779	98105779	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggacggtaacggtcatgCacaggttcctcgcttcctgc	12	12	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98105779	A	A	98105779	2	1	32	1	0	0	0	0	0	0	0	1	10967	697	25	3		3	OPALIN	10	98105779	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1357258	98105779	37428968	487	45027											
SFRP5	6425	broad.mit.edu	37	chr10	99531423	99531423	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagcggcaggtcggcaggGatgtcaaggcactgcggcgg	19	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99531423	A	A	99531423	2	1	32	1	0	0	0	0	0	0	0	1	14277	1164	41	4		4	SFRP5	10	99531423	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1425644	99531423	36003324	488	45028											
CCDC147	159686	broad.mit.edu	37	chr10	106152064	106152064	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggaaaaaaatagctgaatCagagattaaattaaaacagc	7	5	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106152064	A	A	106152064	4	1	32	1	0	0	0	0	0	1	0	0	2807	838	29	3	1477	3	CCDC147	10	106152064	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	6620641	106152064	29382683	489	45029											
SORCS3	22986	broad.mit.edu	37	chr10	106899352	106899352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtttggaaggactgctGgcatttagactcactcacca	9	10	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106899352	T	T	106899352	1	4	32	0	1	0	0	0	0	0	0	0	15046	1363	47	2		2	SORCS3	10	106899352	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	747288	106899352	28635395	490	45030											
SORCS1	114815	broad.mit.edu	37	chr10	108589327	108589327	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcatgctgaatatacatttCttaccttacgcttgttggta	7	8	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108589327	T	T	108589327	1	4	32	0	1	0	0	0	0	0	0	0	15044	928	32	4		4	SORCS1	10	108589327	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1689975	108589327	26945420	491	45031											
NRAP	4892	broad.mit.edu	37	chr10	115377392	115377392	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagaaaatcataggttgcTtgagattagagtgaatttgt	11	2	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115377392	A	A	115377392	1	1	32	0	1	0	0	0	0	0	0	0	10733	1624	56	5		5	NRAP	10	115377392	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	6788065	115377392	20157355	492	45032											
ABLIM1	3983	broad.mit.edu	37	chr10	116203903	116203903	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgagttaagctattcacaGaaaaaaggaaaaaaaaaaaa	6	5	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116203903	A	A	116203903	1	1	32	0	1	0	0	0	0	0	0	0	94	957	33	4		4	ABLIM1	10	116203903	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	826511	116203903	19330844	493	45033											
ATRNL1	26033	broad.mit.edu	37	chr10	117040882	117040882	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtctgtcaagaactacacCaaatgtcatgtgagaaatga	8	7	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117040882	A	A	117040882	2	1	32	1	0	0	0	0	0	0	0	1	1211	581	21	2		2	ATRNL1	10	117040882	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	836979	117040882	18493865	494	45034											
ATRNL1	26033	broad.mit.edu	37	chr10	117185870	117185870	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatactattagtttcaaatAataaaggtcatcttgaataa	5	5	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117185870	T	T	117185870	1	4	32	0	1	0	0	0	0	0	0	0	1211	377	13	5		5	ATRNL1	10	117185870	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	144988	117185870	18348877	495	45035											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118198996	118198996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctattcttcCtccccgtcttcttcatcctc	1	21	4	0	rs80163012	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118198996	A	A	118198996	1	1	32	0	1	0	0	0	0	0	0	0	12247	696	24	2		2	PNLIPRP3	10	118198996	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1013126	118198996	17335751	496	45036											
HSPA12A	259217	broad.mit.edu	37	chr10	118443279	118443279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggagagcaggagGgggagagagagagcagaggt	23	2	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118443279	T	T	118443279	1	4	32	0	1	0	0	0	0	0	0	0	7473	1247	43	2		2	HSPA12A	10	118443279	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	244283	118443279	17091468	497	45037											
ADAM12	8038	broad.mit.edu	37	chr10	127760258	127760258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagaacagtaagtcacagGgcatggaatggctttgtctg	12	9	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127760258	T	T	127760258	1	4	32	0	1	0	0	0	0	0	0	0	236	1247	43	2		2	ADAM12	10	127760258	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	9316979	127760258	7774489	498	45038											
ADAM8	101	broad.mit.edu	37	chr10	135086591	135086591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccctccctcagggacCcggggccactgtccagcccc	11	20	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135086591	A	A	135086591	1	1	32	0	1	0	0	0	0	0	0	0	252	638	22	2		2	ADAM8	10	135086591	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	7326333	135086591	448156	499	45039											
CYP2E1	1571	broad.mit.edu	37	chr10	135369243	135369243	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagggggtggtcagcaccGgccactccctcctcccaccc	11	18	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135369243	T	T	135369243	1	4	32	0	1	0	0	0	0	0	0	0	4203	1131	39	1		1	CYP2E1	10	135369243	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	282652	135369243	165504	500	45040											
CDHR5	53841	broad.mit.edu	37	chr11	617536	617536	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacagccttgtacccgccctCcggccgccgctccttggtca	10	19	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	617536	G	G	617536	3	3	32	1	0	0	0	0	1	0	0	0	3152	864	30	4	188	4	CDHR5	11	617536	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08		617536	134388980	501	45041											
BRSK2	9024	broad.mit.edu	37	chr11	1480315	1480315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcctctggggccctaccCactcctggctccaccccctc	7	22	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1480315	A	A	1480315	1	1	32	0	1	0	0	0	0	0	0	0	1533	609	21	2		2	BRSK2	11	1480315	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	862779	1480315	133526201	502	45042											
OR52I2	143502	broad.mit.edu	37	chr11	4608963	4608963	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacacccaagtcctgctAgctgacctgtacgtgatcat	8	13	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4608963	T	T	4608963	2	4	32	1	0	0	0	0	0	0	0	1	11215	407	15	5		5	OR52I2	11	4608963	Silent	SNP	A	TCGA-05-5428-01A-01D-1625-08	3128648	4608963	130397553	503	45043											
OR51A4	401666	broad.mit.edu	37	chr11	4967800	4967800	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggagacagtaggaatgGgataattggtttttcttgca	14	3	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4967800	A	A	4967800	2	1	32	1	0	0	0	0	0	0	0	1	11181	1219	43	4		4	OR51A4	11	4967800	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	358837	4967800	130038716	504	45044											
C11orf42	160298	broad.mit.edu	37	chr11	6231697	6231697	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactgggtcagacccaacctCagcatcatgccgcctctggc	9	16	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6231697	T	T	6231697	2	4	32	1	0	0	0	0	0	0	0	1	1653	813	29	4		4	C11orf42	11	6231697	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1263897	6231697	128774819	505	45045											
APBB1	322	broad.mit.edu	37	chr11	6422485	6422485	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtgttcatttttctaTcagcgctgtccaggagctca	8	10	5	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6422485	A	A	6422485	1	1	32	0	1	0	0	0	0	0	0	0	761	1450	50	5		5	APBB1	11	6422485	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	190788	6422485	128584031	506	45046											
IPO7	10527	broad.mit.edu	37	chr11	9457803	9457803	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccttactgcaatttataTtctgttttgatcaggttctt	6	7	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9457803	C	C	9457803	1	2	32	0	1	0	0	0	0	0	0	0	7867	1508	52	5		5	IPO7	11	9457803	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	3035318	9457803	125548713	507	45047											
CALCB	797	broad.mit.edu	37	chr11	15098972	15098972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcctttggcaggcgccGcagggaccttcaagcctgag	13	13	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15098972	T	T	15098972	3	4	32	1	0	0	0	0	1	0	0	0	2602	1087	38	3	375	3	CALCB	11	15098972	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	5641169	15098972	119907544	508	45048											
ABCC8	6833	broad.mit.edu	37	chr11	17457561	17457561	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagaccaactgtagatagtGatgtggggagatatgggaca	15	4	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17457561	T	T	17457561	1	4	32	0	1	0	0	0	0	0	0	0	58	1305	45	3		3	ABCC8	11	17457561	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2358589	17457561	117548955	509	45049											
NELL1	4745	broad.mit.edu	37	chr11	21251018	21251018	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtaggcttgccgccttaGtgttgagttgtgagcagcca	15	8	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21251018	A	A	21251018	1	1	32	0	1	0	0	0	0	0	0	0	10428	1044	36	4		4	NELL1	11	21251018	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3793457	21251018	113755498	510	45050											
SLC17A6	57084	broad.mit.edu	37	chr11	22360243	22360243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttccgtaaaccctggtgGctcagaaagattgtaatatg	10	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22360243	T	T	22360243	1	4	32	0	1	0	0	0	0	0	0	0	14534	1218	42	3		3	SLC17A6	11	22360243	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1109225	22360243	112646273	511	45051											
LUZP2	338645	broad.mit.edu	37	chr11	25071479	25071479	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattgtaatgttgctataaTattatatcatgtgttacaat	6	3	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25071479	C	C	25071479	1	2	32	0	1	0	0	0	0	0	0	0	9174	1421	49	5		5	LUZP2	11	25071479	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	2711236	25071479	109935037	512	45052											
PAX6	5080	broad.mit.edu	37	chr11	31815103	31815103	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagatgtgaaggaggaaacTgagggcaagagaaatgacag	15	5	0	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31815103	A	A	31815103	5	1	32	1	0	0	0	0	0	0	1	0	11577	1594	55	5	365	5	PAX6	11	31815103	Splice_Site	SNP	T	TCGA-05-5428-01A-01D-1625-08	6743624	31815103	103191413	513	45053											
MADD	8567	broad.mit.edu	37	chr11	47296127	47296127	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttcaggcacccgagcagtGatagcgtggcccagactcct	11	14	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47296127	A	A	47296127	3	1	32	1	0	0	0	0	1	0	0	0	9240	1290	45	4	82	4	MADD	11	47296127	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	15481024	47296127	87710389	514	45054											
OR4S1	256148	broad.mit.edu	37	chr11	48328531	48328531	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttggttctcatgccccccAtgttcatgtacattcgtccc	6	14	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48328531	G	G	48328531	3	3	32	1	0	0	0	0	1	0	0	0	11176	217	8	5	759	5	OR4S1	11	48328531	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	1032404	48328531	86677985	515	45055											
OR4C46	119749	broad.mit.edu	37	chr11	51515622	51515622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagagggcatcctacttaCtgtgatggcctatgaccact	10	11	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515622	A	A	51515622	3	1	32	1	0	0	0	0	1	0	0	0	11145	565	20	3	343	3	OR4C46	11	51515622	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3187091	51515622	83490894	516	45056											
OR4C15	81309	broad.mit.edu	37	chr11	55322326	55322326	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttatgtggccatttgcaagCccttgcattactcttctatc	7	11	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55322326	G	G	55322326	3	3	32	1	0	0	0	0	1	0	0	0	11142	739	26	4	546	4	OR4C15	11	55322326	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3806704	55322326	79684190	517	45057											
OR4C6	219432	broad.mit.edu	37	chr11	55433434	55433434	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctgtggtcactcacccCatagacaaggcaatggctgt	11	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55433434	T	T	55433434	2	4	32	1	0	0	0	0	0	0	0	1	11146	581	21	4		4	OR4C6	11	55433434	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	111108	55433434	79573082	518	45058											
OR5L1	219437	broad.mit.edu	37	chr11	55579618	55579618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaattctcaccaccatcCtgaagatgggctctgcagag	9	12	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579618	A	A	55579618	3	1	32	1	0	0	0	0	1	0	0	0	11264	680	24	2	678	2	OR5L1	11	55579618	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	146184	55579618	79426898	519	45059											
OR5I1	10798	broad.mit.edu	37	chr11	55703699	55703699	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctaaggaaaaaatacatggGggtttgaaggtgaggatcaa	14	3	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55703699	C	C	55703699	3	2	32	1	0	0	0	0	1	0	0	0	11258	1232	43	4	769	4	OR5I1	11	55703699	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	124081	55703699	79302817	520	45060											
OR8H2	390151	broad.mit.edu	37	chr11	55872708	55872708	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactcccatgtattttttcCttactcacctgtcatttatt	2	12	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55872708	T	T	55872708	3	4	32	1	0	0	0	0	1	0	0	0	11332	681	24	4	192	4	OR8H2	11	55872708	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	169009	55872708	79133808	521	45061											
OR8H3	390152	broad.mit.edu	37	chr11	55890038	55890038	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactcccatgtattttttcCttactcacctgtcatttatt	2	12	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890038	T	T	55890038	3	4	32	1	0	0	0	0	1	0	0	0	11333	681	24	4	192	4	OR8H3	11	55890038	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	17330	55890038	79116478	522	45062											
OR8J3	81168	broad.mit.edu	37	chr11	55904959	55904960	+	Missense_Mutation	DNP	GG	TT	TT													aaaagttcatcagcattttaGgggcaatgacagtagagttg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55904960	TT	TT	55904959	3	4	32	1	0	0	0	0	1	0	0	0	11336	1000	35	2	713	2	OR8J3	11	55904959	Missense_Mutation	DNP	GG	TCGA-05-5428-01A-01D-1625-08	14921	55904959	79101557	523	45063											
OR9G9	504191	broad.mit.edu	37	chr11	56468369	56468369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttcctttaacttctgccGtgaaaacatcattgatgact	6	9	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56468369	T	T	56468369	3	4	32	1	0	0	0	0	1	0	0	0	11346	1145	40	3	508	3	OR9G9	11	56468369	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	563410	56468369	78538147	524	45064											
CTNND1	1500	broad.mit.edu	37	chr11	57485696	57485696	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggaaccttttgtgttgggtCcagcaattgccatggacaag	13	8	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57485696	G	G	57485696	1	3	32	0	1	0	0	0	0	0	0	0	4053	870	30	4		4	CTNND1	11	57485696	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1017327	57485696	77520820	525	45065											
MS4A12	54860	broad.mit.edu	37	chr11	60268517	60268517	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctgttttcttttttcaGgtgatccagatcatggttgg	11	6	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60268517	T	T	60268517	5	4	32	1	0	0	0	0	0	0	1	0	9950	1014	35	2	282	2	MS4A12	11	60268517	Splice_Site	SNP	G	TCGA-05-5428-01A-01D-1625-08	2782821	60268517	74737999	526	45066											
CDC42BPG	55561	broad.mit.edu	37	chr11	64604410	64604410	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaccttggtgcttcctgctCagctccaccttctcctgctc	7	17	2	0	rs147432161		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64604410	T	T	64604410	2	4	32	1	0	0	0	0	0	0	0	1	3104	813	29	4		4	CDC42BPG	11	64604410	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	4335893	64604410	70402106	527	45067											
PCNXL3	399909	broad.mit.edu	37	chr11	65386199	65386199	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctacttcctgctactcccctGagagctcccggggtgcagca	10	16	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65386199	A	A	65386199	3	1	32	1	0	0	0	0	1	0	0	0	11687	1291	45	4	1388	4	PCNXL3	11	65386199	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	781789	65386199	69620317	528	45068											
EFEMP2	30008	broad.mit.edu	37	chr11	65635480	65635480	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtagcggtgcacaatggatGaaggctgctctcgacataga	13	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65635480	A	A	65635480	3	1	32	1	0	0	0	0	1	0	0	0	4982	1294	45	4	317	4	EFEMP2	11	65635480	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	249281	65635480	69371036	529	45069											
EFEMP2	30008	broad.mit.edu	37	chr11	65635499	65635499	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaggctgctctcgacataGagggttggaggccgggcaga	17	8	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65635499	C	C	65635499	3	2	32	1	0	0	0	0	1	0	0	0	4982	933	33	4	336	4	EFEMP2	11	65635499	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	19	65635499	69371017	530	45070											
CNIH2	254263	broad.mit.edu	37	chr11	66049783	66049783	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagaaccccatcgaccagggGaaccctgcgcgggcagtaag	13	13	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66049783	C	C	66049783	2	2	32	1	0	0	0	0	0	0	0	1	3635	1161	41	4		4	CNIH2	11	66049783	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	414284	66049783	68956733	531	45071											
NPAS4	266743	broad.mit.edu	37	chr11	66193356	66193356	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagcctatactaataccAacacattctcagccccagga	5	13	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66193356	G	G	66193356	1	3	32	0	1	0	0	0	0	0	0	0	10660	145	5	5		5	NPAS4	11	66193356	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	143573	66193356	68813160	532	45072											
ACTN3	89	broad.mit.edu	37	chr11	66325509	66325509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccacaggacatcgccaaCgcctggcgggggctggagca	15	14	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66325509	A	A	66325509	3	1	32	1	0	0	0	0	1	0	0	0	206	535	19	3	1182	3	ACTN3	11	66325509	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	132153	66325509	68681007	533	45073											
CORO1B	57175	broad.mit.edu	37	chr11	67209219	67209219	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacctgcactgagcagcaCgtttcgggccgtggggtgcc	15	13	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67209219	T	T	67209219	3	4	32	1	0	0	0	0	1	0	0	0	3786	536	19	4	1062	4	CORO1B	11	67209219	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	883710	67209219	67797297	534	45074											
IGHMBP2	3508	broad.mit.edu	37	chr11	68701169	68701169	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgtcctcccctacctaaGccttttcctcgtgggagggg	10	14	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68701169	A	A	68701169	1	1	32	0	1	0	0	0	0	0	0	0	7661	986	34	4		4	IGHMBP2	11	68701169	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1491950	68701169	66305347	535	45075											
C2CD3	26005	broad.mit.edu	37	chr11	73814377	73814377	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttttgttgtcccatttgtCtgattgactaaattatggga	8	6	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73814377	G	G	73814377	3	3	32	1	0	0	0	0	1	0	0	0	2176	912	32	4	3584	4	C2CD3	11	73814377	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5113208	73814377	61192139	536	45076											
POLD3	10714	broad.mit.edu	37	chr11	74305272	74305272	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattagagctaatttggtttGctggcaatcattggtatttc	10	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74305272	C	C	74305272	1	2	32	0	1	0	0	0	0	0	0	0	12287	1334	46	4		4	POLD3	11	74305272	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	490895	74305272	60701244	537	45077											
GDPD5	81544	broad.mit.edu	37	chr11	75146592	75146592	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagggtcttggtgtggctgCcaccccctcgggggcccaca	15	14	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75146592	T	T	75146592	3	4	32	1	0	0	0	0	1	0	0	0	6391	739	26	4	43	4	GDPD5	11	75146592	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	841320	75146592	59859924	538	45078											
RSF1	51773	broad.mit.edu	37	chr11	77402092	77402092	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaggctggatttggcCcacaggccacagtatgccaa	12	10	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77402092	G	G	77402092	1	3	32	0	1	0	0	0	0	0	0	0	13810	638	22	4		4	RSF1	11	77402092	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2255500	77402092	57604424	539	45079											
GRM5	2915	broad.mit.edu	37	chr11	88386426	88386426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaattcttgaaaccaagGgtttcggtggtttgtttctg	10	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88386426	T	T	88386426	3	4	32	1	0	0	0	0	1	0	0	0	6866	1232	43	2	2609	2	GRM5	11	88386426	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	10984334	88386426	46620090	540	45080											
NAALAD2	10003	broad.mit.edu	37	chr11	89896592	89896592	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttttggaaaactgatgaGtaaaggtaaacaacctttct	9	5	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89896592	T	T	89896592	3	4	32	1	0	0	0	0	1	0	0	0	10222	1029	36	3	1228	3	NAALAD2	11	89896592	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1510166	89896592	45109924	541	45081											
NAALAD2	10003	broad.mit.edu	37	chr11	89914911	89914911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaaaaaaaaaaaaaaaGcaatctggttactagaatga	5	3	1	2	rs75423699		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89914911	T	T	89914911	1	4	32	0	1	0	0	0	0	0	0	0	10222	986	34	3		3	NAALAD2	11	89914911	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	18319	89914911	45091605	542	45082											
FAT3	120114	broad.mit.edu	37	chr11	92564916	92564916	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagtcttcgtacaacatcAgcgtgcgggccactgaccag	11	13	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92564916	T	T	92564916	3	4	32	1	0	0	0	0	1	0	0	0	5748	188	7	5	9660	5	FAT3	11	92564916	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	2650005	92564916	42441600	543	45083											
MMP27	64066	broad.mit.edu	37	chr11	102573542	102573542	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgtcaccacccagaccCggaccaggaggaaaggcatg	13	12	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102573542	A	A	102573542	2	1	32	1	0	0	0	0	0	0	0	1	9758	639	23	1		1	MMP27	11	102573542	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	10008626	102573542	32432974	544	45084											
ACAT1	38	broad.mit.edu	37	chr11	108002607	108002607	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttaatattttttacattAtaacattataaatatttata	1	2	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108002607	G	G	108002607	1	3	32	0	1	0	0	0	0	0	0	0	121	464	16	5		5	ACAT1	11	108002607	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	5429065	108002607	27003909	545	45085											
RDX	5962	broad.mit.edu	37	chr11	110124867	110124867	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattctgaatttaaaatcttCctcaaggatactgtctctca	4	9	5	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110124867	T	T	110124867	1	4	32	0	1	0	0	0	0	0	0	0	13306	870	30	4		4	RDX	11	110124867	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2122260	110124867	24881649	546	45086											
DIXDC1	85458	broad.mit.edu	37	chr11	111864406	111864406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgcaggtggatctagagcGagagctagaacacaaagatg	13	6	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111864406	T	T	111864406	3	4	32	1	0	0	0	0	1	0	0	0	4581	1058	37	3	1459	3	DIXDC1	11	111864406	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1739539	111864406	23142110	547	45087											
HTR3A	3359	broad.mit.edu	37	chr11	113848528	113848528	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccaccaggcccgctctgCtgaggctgtcggattacctt	10	15	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113848528	T	T	113848528	2	4	32	1	0	0	0	0	0	0	0	1	7514	796	28	4		4	HTR3A	11	113848528	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1984122	113848528	21157988	548	45088											
CEP164	22897	broad.mit.edu	37	chr11	117282460	117282460	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctctgtgcatcctctgtCacttccgcgcctcctctctc	7	19	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117282460	T	T	117282460	1	4	32	0	1	0	0	0	0	0	0	0	3279	841	29	4		4	CEP164	11	117282460	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3433932	117282460	17724056	549	45089											
HYOU1	10525	broad.mit.edu	37	chr11	118925049	118925049	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctgtctgactcttaacaCaaaactaaacagctccaaca	6	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118925049	T	T	118925049	1	4	32	0	1	0	0	0	0	0	0	0	7540	493	17	4		4	HYOU1	11	118925049	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1642589	118925049	16081467	550	45090											
ABCG4	64137	broad.mit.edu	37	chr11	119029080	119029080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaggaggctggcacagGcctgaccttttgggctgtag	18	8	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119029080	T	T	119029080	1	4	32	0	1	0	0	0	0	0	0	0	70	1218	42	3		3	ABCG4	11	119029080	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	104031	119029080	15977436	551	45091											
SPA17	53340	broad.mit.edu	37	chr11	124551353	124551353	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctataacaatcatgcattcGaggtatggtcctttgaagct	8	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124551353	C	C	124551353	3	2	32	1	0	0	0	0	1	0	0	0	15085	1059	37	4	229	4	SPA17	11	124551353	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	5522273	124551353	10455163	552	45092											
PATE1	160065	broad.mit.edu	37	chr11	125616280	125616280	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctagggttgacagctggtaaGagtcctgaatttaggaacag	13	6	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125616280	A	A	125616280	1	1	32	0	1	0	0	0	0	0	0	0	11567	957	33	4		4	PATE1	11	125616280	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1064927	125616280	9390236	553	45093											
ST14	6768	broad.mit.edu	37	chr11	130060249	130060249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctggggcgtctcgaagGggcgaggcctgaggtccaca	17	12	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130060249	T	T	130060249	1	4	32	0	1	0	0	0	0	0	0	0	15329	1247	43	2		2	ST14	11	130060249	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	4443969	130060249	4946267	554	45094											
GLB1L3	112937	broad.mit.edu	37	chr11	134180979	134180979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcccctgccccgagtacCcaaacttcctcccaaggctg	6	19	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134180979	A	A	134180979	3	1	32	1	0	0	0	0	1	0	0	0	6494	623	22	2	1252	2	GLB1L3	11	134180979	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	4120730	134180979	825537	555	45095											
KDM5A	5927	broad.mit.edu	37	chr12	493250	493250	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctaccacagggatcttcaGagtagatccttgaagttccc	8	12	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	493250	C	C	493250	3	2	32	1	0	0	0	0	1	0	0	0	8203	933	33	4	4863	4	KDM5A	12	493250	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08		493250	133358645	556	45096											
WNK1	65125	broad.mit.edu	37	chr12	992603	992603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatagagagagagtcgtttGtggatcaagtgcgagaaatt	13	4	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	992603	T	T	992603	3	4	32	1	0	0	0	0	1	0	0	0	17504	1377	48	3	5096	3	WNK1	12	992603	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	499353	992603	132859292	557	45097											
CACNA1C	775	broad.mit.edu	37	chr12	2787126	2787127	+	Intron	DNP	GG	TT	TT													gcggggaacgtccaggggaaGgagctgcaccagaggaaagg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2787127	TT	TT	2787126	1	4	32	0	1	0	0	0	0	0	0	0	2566	1015	35	2		2	CACNA1C	12	2787126	Intron	DNP	GG	TCGA-05-5428-01A-01D-1625-08	1794523	2787126	131064769	558	45098											
PARP11	57097	broad.mit.edu	37	chr12	3949445	3949445	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgggaaagtacacatcaaaGaacctcaaggcacctccccc	7	15	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3949445	A	A	3949445	1	1	32	0	1	0	0	0	0	0	0	0	11550	957	33	4		4	PARP11	12	3949445	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1162319	3949445	129902450	559	45099											
SCNN1A	6337	broad.mit.edu	37	chr12	6457990	6457990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggtgtggggcagagggtGggaagaaatggtagaggatg	21	1	0	3	rs72657551	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6457990	A	A	6457990	1	1	32	0	1	0	0	0	0	0	0	0	14040	1363	47	4		4	SCNN1A	12	6457990	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2508545	6457990	127393905	560	45100											
CHD4	1108	broad.mit.edu	37	chr12	6707449	6707449	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgccatttcacaaagaacTgccgctctggccgcccctcc	7	18	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6707449	G	G	6707449	3	3	32	1	0	0	0	0	1	0	0	0	3358	1580	55	5	4233	5	CHD4	12	6707449	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	249459	6707449	127144446	561	45101											
SLC2A3	6515	broad.mit.edu	37	chr12	8075340	8075340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagccaccatgccaggccCagactactgtattattaagg	9	11	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8075340	A	A	8075340	1	1	32	0	1	0	0	0	0	0	0	0	14659	609	21	2		2	SLC2A3	12	8075340	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1367891	8075340	125776555	562	45102											
A2ML1	144568	broad.mit.edu	37	chr12	8975130	8975130	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcctgtgttccaggtgccAggaggtgactgactatagca	12	11	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8975130	T	T	8975130	1	4	32	0	1	0	0	0	0	0	0	0	5	203	7	5		5	A2ML1	12	8975130	5'Flank	SNP	A	TCGA-05-5428-01A-01D-1625-08	899790	8975130	124876765	563	45103											
PRB3	5544	broad.mit.edu	37	chr12	11420885	11420885	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttgtgggggttgtccttCtggctttcccggacgaggtg	15	10	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11420885	G	G	11420885	3	3	32	1	0	0	0	0	1	0	0	0	12550	922	32	4	639	4	PRB3	12	11420885	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2445755	11420885	122431010	564	45104											
ETV6	2120	broad.mit.edu	37	chr12	12022455	12022455	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgctccaggtcacctatcacGacaaatcaccggccttctcc	6	18	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12022455	C	C	12022455	2	2	32	1	0	0	0	0	0	0	0	1	5325	1045	37	4		4	ETV6	12	12022455	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	601570	12022455	121829440	565	45105											
GUCY2C	2984	broad.mit.edu	37	chr12	14813797	14813797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgtcttcattatcttaGgtcagtctgcaggcttcttt	8	8	6	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14813797	T	T	14813797	1	4	32	0	1	0	0	0	0	0	0	0	6961	1015	35	2		2	GUCY2C	12	14813797	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2791342	14813797	119038098	566	45106											
WBP11	51729	broad.mit.edu	37	chr12	14949689	14949689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactttgcataagggataCtcaatctgtataatatttta	6	6	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14949689	A	A	14949689	1	1	32	0	1	0	0	0	0	0	0	0	17385	580	20	3		3	WBP11	12	14949689	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	135892	14949689	118902206	567	45107											
RERGL	79785	broad.mit.edu	37	chr12	18238706	18238706	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcaaccactcacattttaGtggaatcgtattgtgctctt	6	9	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18238706	C	C	18238706	1	2	32	0	1	0	0	0	0	0	0	0	13341	1044	36	4		4	RERGL	12	18238706	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3289017	18238706	115613189	568	45108											
SLCO1A2	6579	broad.mit.edu	37	chr12	21422397	21422397	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaaagacaagaaaaagttAtctattatatctctactgat	4	6	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21422397	G	G	21422397	1	3	32	0	1	0	0	0	0	0	0	0	14836	464	16	5		5	SLCO1A2	12	21422397	3'UTR	SNP	A	TCGA-05-5428-01A-01D-1625-08	3183691	21422397	112429498	569	45109											
PYROXD1	79912	broad.mit.edu	37	chr12	21614098	21614098	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctgatacaggcaagtaatGaaataagaaaaaatatatat	7	3	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21614098	A	A	21614098	1	1	32	0	1	0	0	0	0	0	0	0	12974	1305	45	4		4	PYROXD1	12	21614098	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	191701	21614098	112237797	570	45110											
SOX5	6660	broad.mit.edu	37	chr12	23999001	23999001	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaactgcccttgcgccgttCaggagttcccagggctgtac	11	13	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23999001	T	T	23999001	3	4	32	1	0	0	0	0	1	0	0	0	15068	835	29	4	1956	4	SOX5	12	23999001	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2384903	23999001	109852894	571	45111											
KLHDC5	57542	broad.mit.edu	37	chr12	27944938	27944938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgacatatccgagtgtcatGttatgctttaatagtgtaca	8	8	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27944938	T	T	27944938	1	4	32	0	1	0	0	0	0	0	0	0	8430	1392	48	3		3	KLHDC5	12	27944938	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3945937	27944938	105906957	572	45112											
CAPRIN2	65981	broad.mit.edu	37	chr12	30876305	30876305	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agacaaaagcttacgcatatCaactaggaggaaactaaagt	8	7	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30876305	A	A	30876305	1	1	32	0	1	0	0	0	0	0	0	0	2662	841	29	3		3	CAPRIN2	12	30876305	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2931367	30876305	102975590	573	45113											
PUS7L	83448	broad.mit.edu	37	chr12	44148624	44148624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacttctctcttacatcaCaggcaaaattattcagtaac	4	12	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44148624	A	A	44148624	3	1	32	1	0	0	0	0	1	0	0	0	12942	478	17	3	1712	3	PUS7L	12	44148624	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	13272319	44148624	89703271	574	45114											
SLC38A4	55089	broad.mit.edu	37	chr12	47163035	47163035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgaggcgtgagtttggGttgaccaaattgaagccttt	12	5	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47163035	T	T	47163035	1	4	32	0	1	0	0	0	0	0	0	0	14720	1276	44	3		3	SLC38A4	12	47163035	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3014411	47163035	86688860	575	45115											
PRPF40B	25766	broad.mit.edu	37	chr12	50025044	50025044	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttcatgccttgtgcttctCaaactaaagccttggaattg	8	9	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50025044	G	G	50025044	1	3	32	0	1	0	0	0	0	0	0	0	12678	841	29	4		4	PRPF40B	12	50025044	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2862009	50025044	83826851	576	45116											
KRT75	9119	broad.mit.edu	37	chr12	52826760	52826760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctcctttgcacctctctGgtcctcacacaaaggagcct	7	15	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52826760	T	T	52826760	1	4	32	0	1	0	0	0	0	0	0	0	8559	1363	47	2		2	KRT75	12	52826760	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2801716	52826760	81025135	577	45117											
MYL6	4637	broad.mit.edu	37	chr12	56552228	56552228	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agacgggcaggattggggacGagaggcaggaagagacgggt	21	5	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56552228	C	C	56552228	1	2	32	0	1	0	0	0	0	0	0	0	10145	1073	37	4		4	MYL6	12	56552228	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3725468	56552228	77299667	578	45118											
NXPH4	11247	broad.mit.edu	37	chr12	57619575	57619575	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcccgccaaatcccagccTcactaggtgggacccccttc	7	20	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57619575	A	A	57619575	1	1	32	0	1	0	0	0	0	0	0	0	10888	1566	54	5		5	NXPH4	12	57619575	3'UTR	SNP	T	TCGA-05-5428-01A-01D-1625-08	1067347	57619575	76232320	579	45119											
AGAP2	116986	broad.mit.edu	37	chr12	58121198	58121198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtcgctttcccacacgcGgttggccgtgtcgttgccaa	12	14	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58121198	T	T	58121198	3	4	32	1	0	0	0	0	1	0	0	0	368	1116	39	1	565	1	AGAP2	12	58121198	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	501623	58121198	75730697	580	45120											
CYP27B1	1594	broad.mit.edu	37	chr12	58157625	58157625	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaacttgtcagtttggGctcagaatagggcaggcatg	12	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58157625	A	A	58157625	1	1	32	0	1	0	0	0	0	0	0	0	4192	1218	42	4		4	CYP27B1	12	58157625	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	36427	58157625	75694270	581	45121											
USP15	9958	broad.mit.edu	37	chr12	62783402	62783402	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagatgatagttactgatatAtacaatcatagatttcacag	6	5	2	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62783402	T	T	62783402	2	4	32	1	0	0	0	0	0	0	0	1	17172	439	16	5		5	USP15	12	62783402	Silent	SNP	A	TCGA-05-5428-01A-01D-1625-08	4625777	62783402	71068493	582	45122											
WIF1	11197	broad.mit.edu	37	chr12	65449066	65449066	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaattacatagttgctttccTtgcaattctttagaatgtgt	7	6	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65449066	A	A	65449066	1	1	32	0	1	0	0	0	0	0	0	0	17493	1624	56	5		5	WIF1	12	65449066	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	2665664	65449066	68402829	583	45123											
TBC1D15	64786	broad.mit.edu	37	chr12	72243918	72243918	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagctttcaaatactccattCtcatgataatcatattattt	2	9	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72243918	T	T	72243918	1	4	32	0	1	0	0	0	0	0	0	0	15723	928	32	4		4	TBC1D15	12	72243918	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	6794852	72243918	61607977	584	45124											
ZDHHC17	23390	broad.mit.edu	37	chr12	77239690	77239690	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtttattactccacgcttCattttctcagttatcttctg	4	10	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77239690	T	T	77239690	1	4	32	0	1	0	0	0	0	0	0	0	17733	841	29	4		4	ZDHHC17	12	77239690	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4995772	77239690	56612205	585	45125											
NAV3	89795	broad.mit.edu	37	chr12	78562462	78562462	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acataaaatcaaacctttttAattcaactatgagcagggag	6	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78562462	T	T	78562462	1	4	32	0	1	0	0	0	0	0	0	0	10279	377	13	5		5	NAV3	12	78562462	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	1322772	78562462	55289433	586	45126											
TMCC3	57458	broad.mit.edu	37	chr12	94975550	94975550	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagcttgccctggctgtcCagtgtgctggctccaccagc	13	15	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94975550	A	A	94975550	2	1	32	1	0	0	0	0	0	0	0	1	16117	581	21	2		2	TMCC3	12	94975550	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	16413088	94975550	38876345	587	45127											
PAH	5053	broad.mit.edu	37	chr12	103234148	103234148	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttcgattactgagaaaccGagtggcctcgtaaggtgtaa	11	8	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103234148	A	A	103234148	1	1	32	0	1	0	0	0	0	0	0	0	11488	1073	37	4		4	PAH	12	103234148	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	8258598	103234148	30617747	588	45128											
TRAFD1	10906	broad.mit.edu	37	chr12	112572953	112572953	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaggaagccagtctggttGagtgttagttctccgtgagc	14	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112572953	T	T	112572953	1	4	32	0	1	0	0	0	0	0	0	0	16571	1305	45	3		3	TRAFD1	12	112572953	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	9338805	112572953	21278942	589	45129											
C12orf51	283450	broad.mit.edu	37	chr12	112622620	112622620	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccagggcctggcaggcatCggcgatggcgtcactcgtca	14	14	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112622620	T	T	112622620	3	4	32	1	0	0	0	0	1	0	0	0	1709	884	31	4	3170	4	C12orf51	12	112622620	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	49667	112622620	21229275	590	45130											
PLBD2	196463	broad.mit.edu	37	chr12	113823138	113823138	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accctccagggcatccacctCactccttgcccagctccttc	5	21	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113823138	G	G	113823138	1	3	32	0	1	0	0	0	0	0	0	0	12121	841	29	4		4	PLBD2	12	113823138	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1200518	113823138	20028757	591	45131											
RBM19	9904	broad.mit.edu	37	chr12	114385258	114385258	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcgatggggtagtggagctCagacaggggacctgaggaca	18	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114385258	T	T	114385258	3	4	32	1	0	0	0	0	1	0	0	0	13229	835	29	4	1650	4	RBM19	12	114385258	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	562120	114385258	19466637	592	45132											
UNC119B	84747	broad.mit.edu	37	chr12	121154855	121154855	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggatgtcagtatgtatcCcctgacccttacagcactct	9	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121154855	G	G	121154855	1	3	32	0	1	0	0	0	0	0	0	0	17109	638	22	4		4	UNC119B	12	121154855	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	6769597	121154855	12697040	593	45133											
CAMKK2	10645	broad.mit.edu	37	chr12	121712118	121712118	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcggcctccaggggccggTcccgcgccaagccgaggtcc	14	18	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121712118	G	G	121712118	3	3	32	1	0	0	0	0	1	0	0	0	2633	1667	58	5	1628	5	CAMKK2	12	121712118	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	557263	121712118	12139777	594	45134											
AACS	65985	broad.mit.edu	37	chr12	125618592	125618592	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaatcaaccccaagacCgggggcatcgtcatgcttgg	12	12	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125618592	T	T	125618592	2	4	32	1	0	0	0	0	0	0	0	1	9	639	23	4		4	AACS	12	125618592	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	3906474	125618592	8233303	595	45135											
EP400	57634	broad.mit.edu	37	chr12	132522728	132522728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagggttctgggtgctcaGtccccactcttccctggcct	10	17	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132522728	T	T	132522728	1	4	32	0	1	0	0	0	0	0	0	0	5191	1044	36	3		3	EP400	12	132522728	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	6904136	132522728	1329167	596	45136											
PGAM5	192111	broad.mit.edu	37	chr12	133291386	133291386	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggaaataacatcttgtcaGaaaaactcaaacttgggaac	7	7	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133291386	A	A	133291386	1	1	32	0	1	0	0	0	0	0	0	0	11871	957	33	4		4	PGAM5	12	133291386	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	768658	133291386	560509	597	45137											
PGAM5	192111	broad.mit.edu	37	chr12	133291502	133291502	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgtggaatctggggaagaaGagctggcgtccaagctggac	16	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133291502	C	C	133291502	3	2	32	1	0	0	0	0	1	0	0	0	11871	943	33	4	256	4	PGAM5	12	133291502	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	116	133291502	560393	598	45138											
SGCG	6445	broad.mit.edu	37	chr13	23820834	23820834	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggcttggattactccAacatgtgcaccacacatgtc	8	11	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23820834	T	T	23820834	1	4	32	0	1	0	0	0	0	0	0	0	14316	145	5	5		5	SGCG	13	23820834	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08		23820834	91349044	599	45139											
SACS	26278	broad.mit.edu	37	chr13	23910525	23910525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgtcgctttgggactgctCctagttttactgctacttcc	9	11	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23910525	A	A	23910525	3	1	32	1	0	0	0	0	1	0	0	0	13915	855	30	3	6253	3	SACS	13	23910525	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	89691	23910525	91259353	600	45140											
CENPJ	55835	broad.mit.edu	37	chr13	25463593	25463593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgttagtctattaatacaCtaagtgaaactaataaaact	5	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25463593	A	A	25463593	1	1	32	0	1	0	0	0	0	0	0	0	3264	580	20	3		3	CENPJ	13	25463593	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1553068	25463593	89706285	601	45141											
B3GALTL	145173	broad.mit.edu	37	chr13	31898026	31898026	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgacacacagccctctcttCcatcaggtgaggaaatggtt	10	11	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31898026	T	T	31898026	2	4	32	1	0	0	0	0	0	0	0	1	1257	854	30	4		4	B3GALTL	13	31898026	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	6434433	31898026	83271852	602	45142											
PDS5B	23047	broad.mit.edu	37	chr13	33306381	33306381	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtaatgagaaaaaaattttCttgtttatttcatatgtcat	6	3	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33306381	T	T	33306381	1	4	32	0	1	0	0	0	0	0	0	0	11786	928	32	4		4	PDS5B	13	33306381	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1408355	33306381	81863497	603	45143											
NBEA	26960	broad.mit.edu	37	chr13	36241794	36241794	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaataattcataatagaatGtctgtgctatccagataaat	5	5	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36241794	A	A	36241794	1	1	32	0	1	0	0	0	0	0	0	0	10281	1392	48	4		4	NBEA	13	36241794	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2935413	36241794	78928084	604	45144											
LRCH1	23143	broad.mit.edu	37	chr13	47266877	47266877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgataatctttctagaGtatgtcctatgtaccaggta	9	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47266877	T	T	47266877	1	4	32	0	1	0	0	0	0	0	0	0	9019	1044	36	3		3	LRCH1	13	47266877	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	11025083	47266877	67903001	605	45145											
DHRS12	79758	broad.mit.edu	37	chr13	52348059	52348059	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtctcaggaaacccacctCactgaccttgttttgtgcat	7	13	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52348059	T	T	52348059	1	4	32	0	1	0	0	0	0	0	0	0	4528	841	29	4		4	DHRS12	13	52348059	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5081182	52348059	62821819	606	45146											
OLFM4	10562	broad.mit.edu	37	chr13	53616044	53616044	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttttgattttctttcaGgtgagggaatatgtccaatt	8	6	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53616044	T	T	53616044	5	4	32	1	0	0	0	0	0	0	1	0	10950	1014	35	2	367	2	OLFM4	13	53616044	Splice_Site	SNP	G	TCGA-05-5428-01A-01D-1625-08	1267985	53616044	61553834	607	45147											
TDRD3	81550	broad.mit.edu	37	chr13	61041321	61041321	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttgtttcccgccctgtgtCcatgtgttctcagcttcaat	8	12	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61041321	T	T	61041321	1	4	32	0	1	0	0	0	0	0	0	0	15854	870	30	4		4	TDRD3	13	61041321	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	7425277	61041321	54128557	608	45148											
TDRD3	81550	broad.mit.edu	37	chr13	61084791	61084791	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaggcagggggcgaataaGatctgaagatgaagaggacc	15	5	1	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61084791	T	T	61084791	3	4	32	1	0	0	0	0	1	0	0	0	15854	942	33	3	1081	3	TDRD3	13	61084791	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	43470	61084791	54085087	609	45149											
GPC6	10082	broad.mit.edu	37	chr13	94197389	94197389	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcccagatagagttcatGgggatggctggagaagtaga	17	5	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94197389	A	A	94197389	1	1	32	0	1	0	0	0	0	0	0	0	6667	1363	47	4		4	GPC6	13	94197389	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	33112598	94197389	20972489	610	45150											
TGDS	23483	broad.mit.edu	37	chr13	95230923	95230923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttatgatatttaagaaagTgtcaccaaatactctaacat	4	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95230923	C	C	95230923	1	2	32	0	1	0	0	0	0	0	0	0	15937	1711	59	5		5	TGDS	13	95230923	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	1033534	95230923	19938955	611	45151											
UGGT2	55757	broad.mit.edu	37	chr13	96484918	96484918	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttacttttatttttcacctCtatgttgtgtcaggagacta	6	7	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96484918	G	G	96484918	1	3	32	0	1	0	0	0	0	0	0	0	17068	928	32	4		4	UGGT2	13	96484918	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1253995	96484918	18684960	612	45152											
UGGT2	55757	broad.mit.edu	37	chr13	96485250	96485250	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcatcatactccacccattCtgggacaattctggcagcag	8	13	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96485250	G	G	96485250	3	3	32	1	0	0	0	0	1	0	0	0	17068	922	32	4	99	4	UGGT2	13	96485250	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	332	96485250	18684628	613	45153											
RNF113B	140432	broad.mit.edu	37	chr13	98829362	98829362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgctgctgctctctccGtgctcggggtcgcaggccgg	15	16	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98829362	T	T	98829362	3	4	32	1	0	0	0	0	1	0	0	0	13539	1136	40	3	847	3	RNF113B	13	98829362	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2344112	98829362	16340516	614	45154											
DOCK9	23348	broad.mit.edu	37	chr13	99537889	99537889	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgcaaaaagatggaaattCagaatcttaatacaatttaa	5	4	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99537889	G	G	99537889	1	3	32	0	1	0	0	0	0	0	0	0	4734	841	29	4		4	DOCK9	13	99537889	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	708527	99537889	15631989	615	45155											
MYO16	23026	broad.mit.edu	37	chr13	109562458	109562458	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggatgggttatctgctgaaGaaaaatatggacttcatctt	10	5	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109562458	A	A	109562458	3	1	32	1	0	0	0	0	1	0	0	0	10158	943	33	4	1877	4	MYO16	13	109562458	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	10024569	109562458	5607420	616	45156											
MYO16	23026	broad.mit.edu	37	chr13	109610051	109610051	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtatttgaaccagacCatacaggatgatgcatccac	8	10	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109610051	A	A	109610051	2	1	32	1	0	0	0	0	0	0	0	1	10158	581	21	2		2	MYO16	13	109610051	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	47593	109610051	5559827	617	45157											
IRS2	8660	broad.mit.edu	37	chr13	110434431	110434431	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagtggtgggacaagaagtCaatgctggcgtaggtgttgg	17	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110434431	A	A	110434431	3	1	32	1	0	0	0	0	1	0	0	0	7911	826	29	3	54	3	IRS2	13	110434431	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	824380	110434431	4735447	618	45158											
ARHGEF7	8874	broad.mit.edu	37	chr13	111896599	111896599	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatctagaagaaatatgttCtttccagcaaatgctcgtac	6	8	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111896599	T	T	111896599	3	4	32	1	0	0	0	0	1	0	0	0	913	913	32	4	1005	4	ARHGEF7	13	111896599	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1462168	111896599	3273279	619	45159											
ATP11A	23250	broad.mit.edu	37	chr13	113508590	113508590	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtttggttttgcctccctCaggctgcaggagaaagctgc	13	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113508590	G	G	113508590	1	3	32	0	1	0	0	0	0	0	0	0	1123	841	29	4		4	ATP11A	13	113508590	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1611991	113508590	1661288	620	45160											
POTEG	404785	broad.mit.edu	37	chr14	19553698	19553698	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gactctgctatgaagacactCaggagcaagatgggcaagtg	13	8	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19553698	T	T	19553698	2	4	32	1	0	0	0	0	0	0	0	1	12362	813	29	4		4	POTEG	14	19553698	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08		19553698	87795842	621	45161											
POTEG	404785	broad.mit.edu	37	chr14	19573209	19573209	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatgttgtttaacaaagtGtagtaagtgtaggcatacgt	10	3	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19573209	A	A	19573209	1	1	32	0	1	0	0	0	0	0	0	0	12362	1392	48	4		4	POTEG	14	19573209	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	19511	19573209	87776331	622	45162											
POTEG	404785	broad.mit.edu	37	chr14	19574138	19574138	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaattaaaaatattctttCtattcaataaagggataact	3	5	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19574138	A	A	19574138	1	1	32	0	1	0	0	0	0	0	0	0	12362	928	32	3		3	POTEG	14	19574138	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	929	19574138	87775402	623	45163											
OR4N2	390429	broad.mit.edu	37	chr14	20296313	20296313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgaggcaaaaaacaagGccatgtccacgtgcatcacc	8	13	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20296313	T	T	20296313	3	4	32	1	0	0	0	0	1	0	0	0	11171	1203	42	3	708	3	OR4N2	14	20296313	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	722175	20296313	87053227	624	45164											
OR4K5	79317	broad.mit.edu	37	chr14	20388746	20388746	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttagagttgtttcagaaCaagtttgcagcttggaacca	9	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20388746	A	A	20388746	1	1	32	0	1	0	0	0	0	0	0	0	11167	493	17	3		3	OR4K5	14	20388746	5'Flank	SNP	C	TCGA-05-5428-01A-01D-1625-08	92433	20388746	86960794	625	45165											
OR4K15	81127	broad.mit.edu	37	chr14	20443737	20443738	+	Missense_Mutation	DNP	CC	AA	AA													caggtagctgaaattaagtcCcttccaaaatcgatgaatga							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20443738	AA	AA	20443737	3	1	32	1	0	0	0	0	1	0	0	0	11164	610	22	2	62	2	OR4K15	14	20443737	Missense_Mutation	DNP	CC	TCGA-05-5428-01A-01D-1625-08	54991	20443737	86905803	626	45166											
RNASE7	84659	broad.mit.edu	37	chr14	21511199	21511199	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttctgctgcttctgctGctggggctgtgggtggcaga	15	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21511199	T	T	21511199	2	4	32	1	0	0	0	0	0	0	0	1	13519	1306	46	3		3	RNASE7	14	21511199	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	1067462	21511199	85838341	627	45167											
OR10G3	26533	broad.mit.edu	37	chr14	22038045	22038045	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaggagtgatggccgtGgggactagggcagctgcccc	18	9	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22038045	A	A	22038045	2	1	32	1	0	0	0	0	0	0	0	1	10994	1335	47	4		4	OR10G3	14	22038045	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	526846	22038045	85311495	628	45168											
ACIN1	22985	broad.mit.edu	37	chr14	23547282	23547282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaactaggactgcttagTcaaagaaccctagggagcga	12	8	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23547282	C	C	23547282	1	2	32	0	1	0	0	0	0	0	0	0	142	1682	58	5		5	ACIN1	14	23547282	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	1509237	23547282	83802258	629	45169											
NGDN	25983	broad.mit.edu	37	chr14	23944783	23944783	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggttttggaaaagcttcGtcccttggaccaaaagctga	11	8	0	1	rs148302816		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23944783	A	A	23944783	3	1	32	1	0	0	0	0	1	0	0	0	10488	1145	40	4	317	4	NGDN	14	23944783	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	397501	23944783	83404757	630	45170											
SDR39U1	56948	broad.mit.edu	37	chr14	24912021	24912021	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaaagtttagagtttacctCacctcagacgcgactacgac	8	11	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24912021	T	T	24912021	1	4	32	0	1	0	0	0	0	0	0	0	14085	841	29	4		4	SDR39U1	14	24912021	5'Flank	SNP	C	TCGA-05-5428-01A-01D-1625-08	967238	24912021	82437519	631	45171											
GZMH	2999	broad.mit.edu	37	chr14	25077801	25077801	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttctgaactttaagtctCagaaccttctctcagaaaga	5	10	4	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25077801	G	G	25077801	1	3	32	0	1	0	0	0	0	0	0	0	6982	841	29	4		4	GZMH	14	25077801	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	165780	25077801	82271739	632	45172											
PRKD1	5587	broad.mit.edu	37	chr14	30095757	30095757	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatctgatatactgtgctGatgtcctagaggtacaagcc	9	8	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30095757	A	A	30095757	2	1	32	1	0	0	0	0	0	0	0	1	12624	1280	45	4		4	PRKD1	14	30095757	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	5017956	30095757	77253783	633	45173											
PRKD1	5587	broad.mit.edu	37	chr14	30396585	30396585	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacgagatgcccccgaccGgggccgcgacaggagccaag	16	14	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30396585	A	A	30396585	3	1	32	1	0	0	0	0	1	0	0	0	12624	1116	39	4	2676	4	PRKD1	14	30396585	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	300828	30396585	76952955	634	45174											
SOS2	6655	broad.mit.edu	37	chr14	50616996	50616996	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcttttacttgacagacatGactgcaaatcttcatttaat	5	8	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50616996	A	A	50616996	1	1	32	0	1	0	0	0	0	0	0	0	15051	1305	45	4		4	SOS2	14	50616996	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	20220411	50616996	56732544	635	45175											
FRMD6	122786	broad.mit.edu	37	chr14	52188615	52188615	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatatggttgcatattatGatggtcatttccctttttgt	7	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52188615	A	A	52188615	1	1	32	0	1	0	0	0	0	0	0	0	6114	1305	45	4		4	FRMD6	14	52188615	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1571619	52188615	55160925	636	45176											
FRMD6	122786	broad.mit.edu	37	chr14	52188726	52188726	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatgaatgaagagtctctgGaagtcagcccagacatgtgc	12	8	2	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52188726	T	T	52188726	4	4	32	1	0	0	0	0	0	1	0	0	6114	1175	41	3	1438	3	FRMD6	14	52188726	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	111	52188726	55160814	637	45177											
OTX2	5015	broad.mit.edu	37	chr14	57268855	57268855	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatctgacagtggggagatGgaagctgggctccagataga	17	6	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57268855	A	A	57268855	2	1	32	1	0	0	0	0	0	0	0	1	11415	1335	47	4		4	OTX2	14	57268855	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	5080129	57268855	50080685	638	45178											
DACT1	51339	broad.mit.edu	37	chr14	59108331	59108331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttatgagctgagtgatgGggcttcaggatccctttcca	12	8	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59108331	T	T	59108331	3	4	32	1	0	0	0	0	1	0	0	0	4255	1232	43	2	510	2	DACT1	14	59108331	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1839476	59108331	48241209	639	45179											
C14orf39	317761	broad.mit.edu	37	chr14	60903780	60903780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttcctaaggaagataaaCattacaatatcatgctcttc	5	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60903780	A	A	60903780	1	1	32	0	1	0	0	0	0	0	0	0	1785	493	17	3		3	C14orf39	14	60903780	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1795449	60903780	46445760	640	45180											
ADAM20	8748	broad.mit.edu	37	chr14	70991507	70991507	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attatggagccatctgtctaGagcagaagagaacaaggtgt	12	6	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70991507	C	C	70991507	3	2	32	1	0	0	0	0	1	0	0	0	242	933	33	4	2216	4	ADAM20	14	70991507	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	10087727	70991507	36358033	641	45181											
PCNX	22990	broad.mit.edu	37	chr14	71518646	71518646	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtctcggccttcttctcTactccactgaacccctttct	5	17	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71518646	C	C	71518646	2	2	32	1	0	0	0	0	0	0	0	1	11685	1509	53	5		5	PCNX	14	71518646	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	527139	71518646	35830894	642	45182											
ACOT1	641371	broad.mit.edu	37	chr14	74008311	74008311	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatggctctggcttactAtaactatgaagacctcccca	8	11	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74008311	G	G	74008311	3	3	32	1	0	0	0	0	1	0	0	0	148	449	16	5	578	5	ACOT1	14	74008311	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	2489665	74008311	33341229	643	45183											
STON2	85439	broad.mit.edu	37	chr14	81862182	81862182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccctatagacctctcaCtgaaaagcatccctgctgac	7	15	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81862182	A	A	81862182	1	1	32	0	1	0	0	0	0	0	0	0	15436	580	20	3		3	STON2	14	81862182	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	7853871	81862182	25487358	644	45184											
FBLN5	10516	broad.mit.edu	37	chr14	92353592	92353592	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgggtcacagcggcagatGaaagagccgtaggtgttgac	15	9	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92353592	A	A	92353592	2	1	32	1	0	0	0	0	0	0	0	1	5757	1281	45	4		4	FBLN5	14	92353592	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	10491410	92353592	14995948	645	45185											
SLC24A4	123041	broad.mit.edu	37	chr14	92913840	92913840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacagccttttgtgacagCagggagaaaaacatctgtca	10	9	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92913840	A	A	92913840	1	1	32	0	1	0	0	0	0	0	0	0	14582	725	25	3		3	SLC24A4	14	92913840	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	560248	92913840	14435700	646	45186											
KIAA1409	57578	broad.mit.edu	37	chr14	94156556	94156556	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagtgtgcccaaatgcCtcctctccctgcctgcccat	7	17	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94156556	T	T	94156556	2	4	32	1	0	0	0	0	0	0	0	1	8300	668	24	4		4	KIAA1409	14	94156556	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1242716	94156556	13192984	647	45187											
SERPINA10	51156	broad.mit.edu	37	chr14	94752420	94752420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatttcatgctgaggttggGctctgatgaaagatcctgac	11	8	2	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94752420	T	T	94752420	1	4	32	0	1	0	0	0	0	0	0	0	14200	1218	42	3		3	SERPINA10	14	94752420	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	595864	94752420	12597120	648	45188											
SERPINA10	51156	broad.mit.edu	37	chr14	94754747	94754747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatttccttggtagggcaGtttgaggacatgacaacgaa	13	7	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94754747	T	T	94754747	3	4	32	1	0	0	0	0	1	0	0	0	14200	1020	36	3	478	3	SERPINA10	14	94754747	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2327	94754747	12594793	649	45189											
CLMN	79789	broad.mit.edu	37	chr14	95675665	95675665	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacgctgcccacgtccctgCttcgtctgatggccagcgga	11	16	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95675665	G	G	95675665	1	3	32	0	1	0	0	0	0	0	0	0	3574	812	28	4		4	CLMN	14	95675665	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	920918	95675665	11673875	650	45190											
ATG2B	55102	broad.mit.edu	37	chr14	96770692	96770692	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagaatgaaaaagaggtaAgagttttatacaagatcctt	9	3	0	5			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96770692	G	G	96770692	1	3	32	0	1	0	0	0	0	0	0	0	1098	87	3	5		5	ATG2B	14	96770692	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	1095027	96770692	10578848	651	45191											
KIAA0284	283638	broad.mit.edu	37	chr14	105350346	105350346	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcatcgagttcttcgaCgaggacacaccccgaaagaa	9	11	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105350346	T	T	105350346	2	4	32	1	0	0	0	0	0	0	0	1	8236	535	19	4		4	KIAA0284	14	105350346	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	8579654	105350346	1999194	652	45192											
NUDT14	256281	broad.mit.edu	37	chr14	105643016	105643016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtcacccccgctgagcCgggcagggctggctgtagct	14	14	1	1	rs141847132		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105643016	A	A	105643016	3	1	32	1	0	0	0	0	1	0	0	0	10825	652	23	1	393	1	NUDT14	14	105643016	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	292670	105643016	1706524	653	45193											
BRF1	2972	broad.mit.edu	37	chr14	105687945	105687945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacgcctgaaagatctccCgatgacctcagcgtccccca	7	18	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105687945	A	A	105687945	1	1	32	0	1	0	0	0	0	0	0	0	1519	667	23	1		1	BRF1	14	105687945	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	44929	105687945	1661595	654	45194											
GABRA5	2558	broad.mit.edu	37	chr15	27159959	27159959	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatttttcagcttgaccatCtctgcagagtgccccatgca	7	12	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27159959	T	T	27159959	2	4	32	1	0	0	0	0	0	0	0	1	6224	903	32	4		4	GABRA5	15	27159959	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08		27159959	75371433	655	45195											
GABRG3	2567	broad.mit.edu	37	chr15	27222010	27222010	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctttttagaaaatattttCgggttttcacgtgtgtggtt	9	4	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27222010	T	T	27222010	1	4	32	0	1	0	0	0	0	0	0	0	6233	899	31	4		4	GABRG3	15	27222010	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	62051	27222010	75309382	656	45196											
GABRG3	2567	broad.mit.edu	37	chr15	27778114	27778114	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagtgaccaatcgggagtaGcaaggaaggacactgcccag	14	9	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27778114	A	A	27778114	1	1	32	0	1	0	0	0	0	0	0	0	6233	986	34	4		4	GABRG3	15	27778114	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	556104	27778114	74753278	657	45197											
LTK	4058	broad.mit.edu	37	chr15	41796253	41796253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcccctggatttgagggGcttgaggccagaggacagcc	17	10	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41796253	T	T	41796253	3	4	32	1	0	0	0	0	1	0	0	0	9167	1203	42	3	62	3	LTK	15	41796253	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	14018139	41796253	60735139	658	45198											
MGA	23269	broad.mit.edu	37	chr15	41991273	41991273	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgtaggttacagagcaAgaatttcccagttggaaaag	13	5	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41991273	T	T	41991273	4	4	32	1	0	0	0	0	0	1	0	0	9633	64	3	5	2118	5	MGA	15	41991273	Nonsense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	195020	41991273	60540119	659	45199											
CATSPER2	117155	broad.mit.edu	37	chr15	43939728	43939728	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatagaccaggtagggttgGgggcagggatactggtcagg	18	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43939728	A	A	43939728	1	1	32	0	1	0	0	0	0	0	0	0	2714	1247	43	4		4	CATSPER2	15	43939728	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1948455	43939728	58591664	660	45200											
DUT	1854	broad.mit.edu	37	chr15	48624438	48624438	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggtctcctcgctcgccttCtggctctgccatgccctgct	10	17	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48624438	T	T	48624438	1	4	32	0	1	0	0	0	0	0	0	0	4873	928	32	4		4	DUT	15	48624438	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4684710	48624438	53906954	661	45201											
FBN1	2200	broad.mit.edu	37	chr15	48729429	48729429	+	Intron	DEL	C	-	-													aaaaagtagcacttaattttCcaagatagatggagaaaaat							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48729429	-	-	48729429	6	5	32	0	1	1	0	1	0	0	0	0	5759	870	30	0		0	FBN1	15	48729429	Intron	DEL	C	TCGA-05-5428-01A-01D-1625-08	104991	48729429	53801963	662	45202											
NR2E3	10002	broad.mit.edu	37	chr15	72109777	72109777	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaattcctcctgacccactCtggggacctcatctctcctc	6	17	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72109777	G	G	72109777	1	3	32	0	1	0	0	0	0	0	0	0	10721	928	32	4		4	NR2E3	15	72109777	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	23380348	72109777	30421615	663	45203											
SIN3A	25942	broad.mit.edu	37	chr15	75705247	75705247	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatctgatgaacctggccagGagttgtcacattcaccatgt	9	10	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75705247	C	C	75705247	3	2	32	1	0	0	0	0	1	0	0	0	14438	1174	41	4	3276	4	SIN3A	15	75705247	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3595470	75705247	26826145	664	45204											
BNC1	646	broad.mit.edu	37	chr15	83926181	83926181	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttatctgagcatacttgGtttgccatcttgttactgga	9	8	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83926181	T	T	83926181	1	4	32	0	1	0	0	0	0	0	0	0	1480	1276	44	3		3	BNC1	15	83926181	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	8220934	83926181	18605211	665	45205											
NTRK3	4916	broad.mit.edu	37	chr15	88472301	88472301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagataactgttgagtgcatGtctgggcatgggtgtgtata	14	4	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88472301	T	T	88472301	1	4	32	0	1	0	0	0	0	0	0	0	10803	1392	48	3		3	NTRK3	15	88472301	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	4546120	88472301	14059091	666	45206											
NTRK3	4916	broad.mit.edu	37	chr15	88474497	88474497	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggataggatgtggtgaaaaGtagggcatgccctttgggcc	16	6	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88474497	C	C	88474497	1	2	32	0	1	0	0	0	0	0	0	0	10803	1044	36	4		4	NTRK3	15	88474497	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2196	88474497	14056895	667	45207											
CLCN7	1186	broad.mit.edu	37	chr16	1501605	1501605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcccagggcctgcccagCggcactgcccacacacacct	9	19	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1501605	A	A	1501605	1	1	32	0	1	0	0	0	0	0	0	0	3499	783	27	3		3	CLCN7	16	1501605	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08		1501605	88853148	668	45208											
SYNGR3	9143	broad.mit.edu	37	chr16	2042716	2042716	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acggcgccagggccggccacGacgcaggcgggggacgcggc	20	15	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2042716	A	A	2042716	2	1	32	1	0	0	0	0	0	0	0	1	15569	1045	37	4		4	SYNGR3	16	2042716	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	541111	2042716	88312037	669	45209											
ZNF598	90850	broad.mit.edu	37	chr16	2048280	2048280	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagggaggggaagtcgtcgtCccgggcagcatgcagcgcct	17	12	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2048280	G	G	2048280	3	3	32	1	0	0	0	0	1	0	0	0	18155	855	30	4	50	4	ZNF598	16	2048280	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5564	2048280	88306473	670	45210											
CASKIN1	57524	broad.mit.edu	37	chr16	2231382	2231382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgggccagtcatggcagCctgcagctcgtcactgagct	13	14	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2231382	A	A	2231382	3	1	32	1	0	0	0	0	1	0	0	0	2692	739	26	3	2320	3	CASKIN1	16	2231382	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	183102	2231382	88123371	671	45211											
SRRM2	23524	broad.mit.edu	37	chr16	2813861	2813861	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcactgagctggcatccaGatctccaataagacaagata	8	10	2	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2813861	A	A	2813861	3	1	32	1	0	0	0	0	1	0	0	0	15287	942	33	4	3370	4	SRRM2	16	2813861	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	582479	2813861	87540892	672	45212											
THOC6	79228	broad.mit.edu	37	chr16	3076108	3076108	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtttccaccgatcgacatCtgcttagtgctggggatggg	14	9	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3076108	G	G	3076108	3	3	32	1	0	0	0	0	1	0	0	0	15992	912	32	4	279	4	THOC6	16	3076108	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	262247	3076108	87278645	673	45213											
A2BP1	54715	broad.mit.edu	37	chr16	7743313	7743313	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgaattttatcttctcttCcagaaatcagttcgtcttcg	6	9	4	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7743313	A	A	7743313	1	1	32	0	1	0	0	0	0	0	0	0	3	870	30	3		3	A2BP1	16	7743313	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4667205	7743313	82611440	674	45214											
RUNDC2A	84127	broad.mit.edu	37	chr16	12096810	12096810	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgacgttttgagtgtcccatCccaacagctgatctcagcag	9	12	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12096810	G	G	12096810	1	3	32	0	1	0	0	0	0	0	0	0	13854	870	30	4		4	RUNDC2A	16	12096810	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4353497	12096810	78257943	675	45215											
NDE1	54820	broad.mit.edu	37	chr16	15771799	15771799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgacgacctggaaagaGccaagcggtatgggtggaag	15	7	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15771799	T	T	15771799	3	4	32	1	0	0	0	0	1	0	0	0	10338	971	34	3	389	3	NDE1	16	15771799	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3674989	15771799	74582954	676	45216											
UMOD	7369	broad.mit.edu	37	chr16	20346766	20346766	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaagccccccaggagagttCtggaacaggtcccactgcag	12	13	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20346766	T	T	20346766	1	4	32	0	1	0	0	0	0	0	0	0	17105	928	32	4		4	UMOD	16	20346766	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4574967	20346766	70007987	677	45217											
UMOD	7369	broad.mit.edu	37	chr16	20352544	20352544	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccacgtagagaaaagcCtcagtggacagtgtcacgga	13	10	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20352544	T	T	20352544	2	4	32	1	0	0	0	0	0	0	0	1	17105	680	24	4		4	UMOD	16	20352544	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	5778	20352544	70002209	678	45218											
ACSM5	54988	broad.mit.edu	37	chr16	20432493	20432493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgtggtatttatgaaacGgtagtcatattgttgttaca	9	4	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20432493	T	T	20432493	1	4	32	0	1	0	0	0	0	0	0	0	187	1131	39	1		1	ACSM5	16	20432493	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	79949	20432493	69922260	679	45219											
ACSM5	54988	broad.mit.edu	37	chr16	20432712	20432712	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctacggactgggttttgtGgccagcggaaggtaccagag	16	8	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20432712	T	T	20432712	2	4	32	1	0	0	0	0	0	0	0	1	187	1335	47	2		2	ACSM5	16	20432712	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	219	20432712	69922041	680	45220											
PRKCB	5579	broad.mit.edu	37	chr16	24166083	24166083	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggacgttgtgatccaagatGatgacgtggagtgcactatg	14	6	0	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24166083	A	A	24166083	3	1	32	1	0	0	0	0	1	0	0	0	12614	1290	45	4	1182	4	PRKCB	16	24166083	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3733371	24166083	66188670	681	45221											
RBBP6	5930	broad.mit.edu	37	chr16	24574724	24574724	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaactatttctgtttAtttgtggttgtttctaaagg	7	3	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24574724	T	T	24574724	1	4	32	0	1	0	0	0	0	0	0	0	13211	464	16	5		5	RBBP6	16	24574724	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	408641	24574724	65780029	682	45222											
IL4R	3566	broad.mit.edu	37	chr16	27374394	27374394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctcggcccccaccagtgGctatcaggagtttgtacatg	11	13	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27374394	T	T	27374394	3	4	32	1	0	0	0	0	1	0	0	0	7768	1203	42	3	1773	3	IL4R	16	27374394	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2799670	27374394	62980359	683	45223											
KIAA0556	23247	broad.mit.edu	37	chr16	27732803	27732803	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcctggttttcgtgagccAaagagccgctgccattttac	9	12	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27732803	G	G	27732803	1	3	32	0	1	0	0	0	0	0	0	0	8253	145	5	5		5	KIAA0556	16	27732803	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	358409	27732803	62621950	684	45224											
SRCAP	10847	broad.mit.edu	37	chr16	30732519	30732519	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgtctgcagtgttgccatCccccctgggggtcctgagtg	14	12	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30732519	T	T	30732519	3	4	32	1	0	0	0	0	1	0	0	0	15253	855	30	4	3337	4	SRCAP	16	30732519	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2999716	30732519	59622234	685	45225											
SLC6A2	6530	broad.mit.edu	37	chr16	55731728	55731728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagtcctgggctgcaggaGgctctaggaaccctggggcc	16	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55731728	T	T	55731728	1	4	32	0	1	0	0	0	0	0	0	0	14797	1015	35	2		2	SLC6A2	16	55731728	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	24999209	55731728	34623025	686	45226											
GNAO1	2775	broad.mit.edu	37	chr16	56374524	56374524	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcccccaaccctgcccGgccctgctccgccccgccct	7	25	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56374524	A	A	56374524	1	1	32	0	1	0	0	0	0	0	0	0	6572	1131	39	4		4	GNAO1	16	56374524	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	642796	56374524	33980229	687	45227											
ZDHHC1	29800	broad.mit.edu	37	chr16	67433380	67433380	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagggagagggggcacaGcgcgattggccggctcattc	17	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67433380	C	C	67433380	1	2	32	0	1	0	0	0	0	0	0	0	17726	986	34	4		4	ZDHHC1	16	67433380	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	11058856	67433380	22921373	688	45228											
CDH1	999	broad.mit.edu	37	chr16	68862125	68862125	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggaggagagcggtggtcaAagagcccttactgcccccag	14	12	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68862125	G	G	68862125	3	3	32	1	0	0	0	0	1	0	0	0	3125	14	1	5	2267	5	CDH1	16	68862125	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	1428745	68862125	21492628	689	45229											
PDPR	55066	broad.mit.edu	37	chr16	70154645	70154645	+	Intron	DEL	C	-	-													aaggatcagactgcatttggCtcatggctgtgctgcactaa							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70154645	-	-	70154645	6	5	32	0	1	1	0	1	0	0	0	0	11783	812	28	0		0	PDPR	16	70154645	Intron	DEL	C	TCGA-05-5428-01A-01D-1625-08	1292520	70154645	20200108	690	45230											
HYDIN	54768	broad.mit.edu	37	chr16	71025199	71025199	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acccttgacctgcctaccctCcccatggaaaggacaccgta	7	17	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71025199	G	G	71025199	3	3	32	1	0	0	0	0	1	0	0	0	7537	864	30	4	11724	4	HYDIN	16	71025199	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	870554	71025199	19329554	691	45231											
HPR	3250	broad.mit.edu	37	chr16	72110531	72110531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcaaacagaaggtgcttGttaatgagagagtgatgccc	11	7	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72110531	T	T	72110531	3	4	32	1	0	0	0	0	1	0	0	0	7404	1377	48	3	616	3	HPR	16	72110531	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1085332	72110531	18244222	692	45232											
ADAMTS18	170692	broad.mit.edu	37	chr16	77325355	77325355	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctccctcttcctcacaccCaaaccacaggttgcagaaca	4	17	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77325355	G	G	77325355	3	3	32	1	0	0	0	0	1	0	0	0	263	593	21	4	467	4	ADAMTS18	16	77325355	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5214824	77325355	13029398	693	45233											
ZDHHC7	55625	broad.mit.edu	37	chr16	85010788	85010788	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaccctcaaggcacaggaaGatcaacaggattacagttat	9	9	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85010788	A	A	85010788	2	1	32	1	0	0	0	0	0	0	0	1	17746	932	33	4		4	ZDHHC7	16	85010788	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	7685433	85010788	5343965	694	45234											
ITGAE	3682	broad.mit.edu	37	chr17	3631522	3631522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcccttttttggagacaGggtctcactctgttgcccag	9	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3631522	T	T	3631522	1	4	32	0	1	0	0	0	0	0	0	0	7955	1015	35	2		2	ITGAE	17	3631522	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08		3631522	77563688	695	45235											
PELP1	27043	broad.mit.edu	37	chr17	4576080	4576080	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggggcaaggatggggtcctCatttgagcctgcccggtggt	17	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4576080	T	T	4576080	3	4	32	1	0	0	0	0	1	0	0	0	11819	835	29	4	1194	4	PELP1	17	4576080	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	944558	4576080	76619130	696	45236											
FBXO39	162517	broad.mit.edu	37	chr17	6690004	6690004	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccaaatcatcatggctatCaggcccagagccaggtcgtg	10	14	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6690004	G	G	6690004	1	3	32	0	1	0	0	0	0	0	0	0	5804	841	29	4		4	FBXO39	17	6690004	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2113924	6690004	74505206	697	45237											
TP53	7157	broad.mit.edu	37	chr17	7577568	7577568	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccatgcaggaactgttaCacatgtagttgtagtggatg	12	8	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577568	T	T	7577568	3	4	32	1	0	0	0	0	1	0	0	0	16505	478	17	4	577	4	TP53	17	7577568	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	887564	7577568	73617642	698	45238											
ALOXE3	59344	broad.mit.edu	37	chr17	8012568	8012568	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccaggacgccgcgggcccGcaggctgtccggaaggcaga	17	14	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8012568	A	A	8012568	3	1	32	1	0	0	0	0	1	0	0	0	542	1086	38	4	669	4	ALOXE3	17	8012568	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	435000	8012568	73182642	699	45239											
MYH8	4626	broad.mit.edu	37	chr17	10310251	10310251	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgatacaccgtacgaagtGagggtgtgtgctcctcagat	12	8	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10310251	A	A	10310251	3	1	32	1	0	0	0	0	1	0	0	0	10135	1290	45	4	3894	4	MYH8	17	10310251	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2297683	10310251	70884959	700	45240											
MYH2	4620	broad.mit.edu	37	chr17	10428422	10428422	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacattagcaaggaaccaaaAgctttatgaagtttttctgc	8	7	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10428422	C	C	10428422	1	2	32	0	1	0	0	0	0	0	0	0	10129	87	3	5		5	MYH2	17	10428422	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	118171	10428422	70766788	701	45241											
MYH2	4620	broad.mit.edu	37	chr17	10450921	10450921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggggaagacctgatcatcCttcactgtcagagtctggta	11	9	4	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10450921	A	A	10450921	3	1	32	1	0	0	0	0	1	0	0	0	10129	680	24	2	5754	2	MYH2	17	10450921	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	22499	10450921	70744289	702	45242											
RNF112	7732	broad.mit.edu	37	chr17	19316938	19316938	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgccatgagccctgagctgAgcagggaaacaaggatcaag	13	9	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19316938	T	T	19316938	3	4	32	1	0	0	0	0	1	0	0	0	13537	304	11	5	501	5	RNF112	17	19316938	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	8866017	19316938	61878272	703	45243											
KSR1	8844	broad.mit.edu	37	chr17	25932628	25932628	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgagcaggtagagctgggcGagcccatcgggcagggccgc	18	12	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25932628	T	T	25932628	4	4	32	1	0	0	0	0	0	1	0	0	8653	1059	37	3	1484	3	KSR1	17	25932628	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	6615690	25932628	55262582	704	45244											
NF1	4763	broad.mit.edu	37	chr17	29588707	29588707	+	Intron	DEL	C	-	-													gtgaactgctaattttttttCtaagtagtttgctgtatcta							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29588707	-	-	29588707	6	5	32	0	1	1	0	1	0	0	0	0	10451	928	32	0		0	NF1	17	29588707	Intron	DEL	C	TCGA-05-5428-01A-01D-1625-08	3656079	29588707	51606503	705	45245											
UNC45B	146862	broad.mit.edu	37	chr17	33510550	33510550	+	Frame_Shift_Del	DEL	G	-	-													aatgcggctgcaggggctctGgccatgctgacagcagcaca							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33510550	-	-	33510550	7	5	32	1	0	1	0	1	0	0	0	0	17115	1335	47	0	2554	0	UNC45B	17	33510550	Frame_Shift_Del	DEL	G	TCGA-05-5428-01A-01D-1625-08	3921843	33510550	47684660	706	45246											
PEX12	5193	broad.mit.edu	37	chr17	33904007	33904007	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attttacaaaactgggatacGattttcgaatttactaacta	5	6	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33904007	A	A	33904007	1	1	32	0	1	0	0	0	0	0	0	0	11835	1073	37	4		4	PEX12	17	33904007	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	393457	33904007	47291203	707	45247											
LASP1	3927	broad.mit.edu	37	chr17	37071325	37071325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccagcagcagccggtgGcccagtcctatggtggctac	13	15	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37071325	T	T	37071325	3	4	32	1	0	0	0	0	1	0	0	0	8709	1203	42	3	560	3	LASP1	17	37071325	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3167318	37071325	44123885	708	45248											
GSDMB	55876	broad.mit.edu	37	chr17	38068851	38068851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctgggttccgtgccacCatccccctcccttctgaggg	9	18	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38068851	A	A	38068851	1	1	32	0	1	0	0	0	0	0	0	0	6883	609	21	2		2	GSDMB	17	38068851	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	997526	38068851	43126359	709	45249											
KRT34	3885	broad.mit.edu	37	chr17	39537532	39537532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctctcatgtgttgtttgGgtagaattggcctgaatctt	10	9	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39537532	T	T	39537532	1	4	32	0	1	0	0	0	0	0	0	0	8542	1247	43	2		2	KRT34	17	39537532	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1468681	39537532	41657678	710	45250											
KRT34	3885	broad.mit.edu	37	chr17	39538048	39538048	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagccttggcacacagaatCtgaaaagaaatttctctcat	6	10	4	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39538048	T	T	39538048	5	4	32	1	0	0	0	0	0	0	1	0	8542	927	32	4	860	4	KRT34	17	39538048	Splice_Site	SNP	C	TCGA-05-5428-01A-01D-1625-08	516	39538048	41657162	711	45251											
AOC2	314	broad.mit.edu	37	chr17	40996835	40996835	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacctgagccgagaggagttGacagctgtgatgcgctttct	14	9	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40996835	C	C	40996835	3	2	32	1	0	0	0	0	1	0	0	0	729	1281	45	4	194	4	AOC2	17	40996835	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1458787	40996835	40198375	712	45252											
UBTF	7343	broad.mit.edu	37	chr17	42287476	42287476	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcaatgaatggggtggccCcagccccattcctacctcat	8	14	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42287476	G	G	42287476	1	3	32	0	1	0	0	0	0	0	0	0	17035	638	22	4		4	UBTF	17	42287476	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1290641	42287476	38907734	713	45253											
LRRC37A2	474170	broad.mit.edu	37	chr17	44626163	44626163	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtggaacagccccacacaCagcaggggcctgagaagtta	13	11	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44626163	T	T	44626163	4	4	32	1	0	0	0	0	0	1	0	0	9079	479	17	4	3692	4	LRRC37A2	17	44626163	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2338687	44626163	36569047	714	45254											
NPEPPS	9520	broad.mit.edu	37	chr17	45697057	45697057	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggtaaatggaagtttgttCtcagcctcttggtttcactt	10	7	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45697057	T	T	45697057	1	4	32	0	1	0	0	0	0	0	0	0	10670	928	32	4		4	NPEPPS	17	45697057	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1070894	45697057	35498153	715	45255											
EFCAB3	146779	broad.mit.edu	37	chr17	60484419	60484419	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggttcagatagcccatattCaaaaatacccatctttccat	4	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60484419	A	A	60484419	4	1	32	1	0	0	0	0	0	1	0	0	4975	838	29	3	907	3	EFCAB3	17	60484419	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	14787362	60484419	20710791	716	45256											
MAP3K3	4215	broad.mit.edu	37	chr17	61744398	61744398	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctaccagccccccgagccCagaagcaggcacctctctgt	8	18	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61744398	T	T	61744398	2	4	32	1	0	0	0	0	0	0	0	1	9343	581	21	4		4	MAP3K3	17	61744398	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	1259979	61744398	19450812	717	45257											
ABCA8	10351	broad.mit.edu	37	chr17	66928614	66928614	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttcatattttttccagtAactgacatcagctcctccat	3	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66928614	T	T	66928614	2	4	32	1	0	0	0	0	0	0	0	1	38	349	13	5		5	ABCA8	17	66928614	Silent	SNP	A	TCGA-05-5428-01A-01D-1625-08	5184216	66928614	14266596	718	45258											
SDK2	54549	broad.mit.edu	37	chr17	71427796	71427796	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcacagagccactggccAagatgcgctcccctgagggc	13	15	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71427796	T	T	71427796	4	4	32	1	0	0	0	0	0	1	0	0	14082	131	5	5	5333	5	SDK2	17	71427796	Nonsense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	4499182	71427796	9767414	719	45259											
TTYH2	94015	broad.mit.edu	37	chr17	72209803	72209803	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtcccgcacgtcggcctgcGcctgcagcccgtgaacagca	12	18	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72209803	C	C	72209803	3	2	32	1	0	0	0	0	1	0	0	0	16866	1087	38	4	79	4	TTYH2	17	72209803	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	782007	72209803	8985407	720	45260											
NUP85	79902	broad.mit.edu	37	chr17	73231417	73231417	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatgtgcctctgttccccTtaacctgtgtaattcacaca	5	14	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73231417	G	G	73231417	1	3	32	0	1	0	0	0	0	0	0	0	10865	1624	56	5		5	NUP85	17	73231417	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	1021614	73231417	7963793	721	45261											
MGAT5B	146664	broad.mit.edu	37	chr17	74865078	74865078	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggacggtgcgtccggcctCgcccgcggctgctcgcacca	14	18	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74865078	A	A	74865078	1	1	32	0	1	0	0	0	0	0	0	0	9642	899	31	3		3	MGAT5B	17	74865078	5'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	1633661	74865078	6330132	722	45262											
SEC14L1	6397	broad.mit.edu	37	chr17	75196674	75196674	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtggagaaagcagcatcagGtagactacattcttgaaacc	10	9	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75196674	C	C	75196674	3	2	32	1	0	0	0	0	1	0	0	0	14094	1261	44	4	954	4	SEC14L1	17	75196674	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	331596	75196674	5998536	723	45263											
GPS1	2873	broad.mit.edu	37	chr17	80015086	80015086	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcggctcagtgctgccTgcggcccagctaaggggcct	15	15	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80015086	C	C	80015086	1	2	32	0	1	0	0	0	0	0	0	0	6798	1595	55	5		5	GPS1	17	80015086	3'UTR	SNP	T	TCGA-05-5428-01A-01D-1625-08	4818412	80015086	1180124	724	45264											
EPB41L3	23136	broad.mit.edu	37	chr18	5489094	5489094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctccggcacgggcgccCccgcgcgcccctgcgccccc	14	24	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5489094	A	A	5489094	3	1	32	1	0	0	0	0	1	0	0	0	5196	623	22	2	3258	2	EPB41L3	18	5489094	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08		5489094	72588154	725	45265											
OSBPL1A	114876	broad.mit.edu	37	chr18	21898823	21898823	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caacagcttaaatgtactatGacaatcaatgctgtaactgc	6	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21898823	C	C	21898823	1	2	32	0	1	0	0	0	0	0	0	0	11371	1305	45	4		4	OSBPL1A	18	21898823	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	16409729	21898823	56178425	726	45266											
KCTD1	284252	broad.mit.edu	37	chr18	24056722	24056722	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtcaaaggtagcacttttGaagatggcagtagggaaaaa	12	5	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24056722	C	C	24056722	1	2	32	0	1	0	0	0	0	0	0	0	8166	1305	45	4		4	KCTD1	18	24056722	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2157899	24056722	54020526	727	45267											
KLHL14	57565	broad.mit.edu	37	chr18	30260371	30260371	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtggaggaattacttgCctgaaatgtatattttccca	9	6	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30260371	A	A	30260371	5	1	32	1	0	0	0	0	0	0	1	0	8441	753	26	3	472	3	KLHL14	18	30260371	Splice_Site	SNP	C	TCGA-05-5428-01A-01D-1625-08	6203649	30260371	47816877	728	45268											
C18orf34	374864	broad.mit.edu	37	chr18	30806759	30806759	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaccaaatcagtattacctGaagcaccattccagcagcca	5	13	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30806759	A	A	30806759	4	1	32	1	0	0	0	0	0	1	0	0	1920	1299	45	4	981	4	C18orf34	18	30806759	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	546388	30806759	47270489	729	45269											
C18orf34	374864	broad.mit.edu	37	chr18	30873253	30873253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtaatgatcaaatagaCtgttaagttgatatatctct	7	4	2	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30873253	A	A	30873253	3	1	32	1	0	0	0	0	1	0	0	0	1920	565	20	3	1605	3	C18orf34	18	30873253	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	66494	30873253	47203995	730	45270											
ASXL3	80816	broad.mit.edu	37	chr18	31312119	31312119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatttttcagtcttttccCcgacacagtacactttaatt	4	11	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31312119	A	A	31312119	1	1	32	0	1	0	0	0	0	0	0	0	1072	638	22	2		2	ASXL3	18	31312119	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	438866	31312119	46765129	731	45271											
ASXL3	80816	broad.mit.edu	37	chr18	31314323	31314324	+	Nonsense_Mutation	DNP	GG	CT	CT													ataaggcaagaaattgagaaGgaaaagaaaacagaaccttg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	31314324	CT	CT	31314323	4	2	32	1	0	0	0	0	0	1	0	0	1072	991	35	4	1064	4	ASXL3	18	31314323	Nonsense_Mutation	DNP	GG	TCGA-05-5428-01A-01D-1625-08	2204	31314323	46762925	732	45272											
ASXL3	80816	broad.mit.edu	37	chr18	31323015	31323015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaacaagctcgggcccagcGagaggctgctgcagctgctg	14	14	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323015	T	T	31323015	3	4	32	1	0	0	0	0	1	0	0	0	1072	1058	37	3	3249	3	ASXL3	18	31323015	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	8692	31323015	46754233	733	45273											
ASXL3	80816	broad.mit.edu	37	chr18	31324969	31324969	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaagtcccatggaagaggcTatttccttggctaccgatgc	10	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324969	A	A	31324969	2	1	32	1	0	0	0	0	0	0	0	1	1072	1509	53	5		5	ASXL3	18	31324969	Silent	SNP	T	TCGA-05-5428-01A-01D-1625-08	1954	31324969	46752279	734	45274											
TCEB3B	51224	broad.mit.edu	37	chr18	44561102	44561102	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagggccctcgggcatccgGaggggagctgtgcgcgttgg	19	11	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44561102	T	T	44561102	2	4	32	1	0	0	0	0	0	0	0	1	15804	1161	41	3		3	TCEB3B	18	44561102	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	13236133	44561102	33516146	735	45275											
ME2	4200	broad.mit.edu	37	chr18	48439200	48439200	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cataatgggaatacaagaaaGaaatgagaaattgttttata	8	2	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48439200	C	C	48439200	3	2	32	1	0	0	0	0	1	0	0	0	9511	942	33	4	282	4	ME2	18	48439200	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3878098	48439200	29638048	736	45276											
MBD2	8932	broad.mit.edu	37	chr18	51731344	51731344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttcgaagtagcatataCatgcgataagtaaattaacc	7	7	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51731344	A	A	51731344	1	1	32	0	1	0	0	0	0	0	0	0	9435	493	17	3		3	MBD2	18	51731344	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3292144	51731344	26345904	737	45277											
ATP8B1	5205	broad.mit.edu	37	chr18	55317826	55317826	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcatgcctgtaatcctaAcactttgagaggccaaggtg	11	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55317826	G	G	55317826	1	3	32	0	1	0	0	0	0	0	0	0	1198	58	2	5		5	ATP8B1	18	55317826	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	3586482	55317826	22759422	738	45278											
ALPK2	115701	broad.mit.edu	37	chr18	56149385	56149385	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaacatatatgaatttcTgttttagataagaatggctg	9	3	1	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56149385	C	C	56149385	1	2	32	0	1	0	0	0	0	0	0	0	545	1595	55	5		5	ALPK2	18	56149385	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	831559	56149385	21927863	739	45279											
BCL2	596	broad.mit.edu	37	chr18	60985525	60985525	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcaaagcgtccccgcgcGgtgaagggcgtcaggtgcag	18	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60985525	A	A	60985525	2	1	32	1	0	0	0	0	0	0	0	1	1370	1103	39	4		4	BCL2	18	60985525	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	4836140	60985525	17091723	740	45280											
VPS4B	9525	broad.mit.edu	37	chr18	61077470	61077470	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttttaatcaaaagaaatttCacaaatcgaaagcaaaaagc	5	6	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61077470	T	T	61077470	1	4	32	0	1	0	0	0	0	0	0	0	17340	841	29	4		4	VPS4B	18	61077470	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	91945	61077470	16999778	741	45281											
CDH19	28513	broad.mit.edu	37	chr18	64178894	64178894	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcttctatggattcatctCtatccactgcactgatagtc	6	12	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64178894	T	T	64178894	3	4	32	1	0	0	0	0	1	0	0	0	3134	913	32	4	843	4	CDH19	18	64178894	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3101424	64178894	13898354	742	45282											
CBLN2	147381	broad.mit.edu	37	chr18	70209225	70209225	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttgccctccagcacgatGggctccgtgtcgttctgcgc	11	16	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70209225	A	A	70209225	2	1	32	1	0	0	0	0	0	0	0	1	2731	1335	47	4		4	CBLN2	18	70209225	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	6030331	70209225	7868023	743	45283											
SALL3	27164	broad.mit.edu	37	chr18	76753481	76753481	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcccacctgctcgggcaTcccctacggcatgtcgctgc	11	18	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76753481	G	G	76753481	3	3	32	1	0	0	0	0	1	0	0	0	13923	1435	50	5	1496	5	SALL3	18	76753481	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	6544256	76753481	1323767	744	45284											
CTDP1	9150	broad.mit.edu	37	chr18	77455253	77455253	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgaggttggaaggatgcAgccacccggttgtcatgaaa	15	7	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77455253	T	T	77455253	3	4	32	1	0	0	0	0	1	0	0	0	4036	188	7	5	349	5	CTDP1	18	77455253	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	701772	77455253	621995	745	45285											
C19orf21	126353	broad.mit.edu	37	chr19	761679	761679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtgagtatgctcctgGgcacgaagactcaagtcttt	12	9	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	761679	T	T	761679	1	4	32	0	1	0	0	0	0	0	0	0	1932	1247	43	2		2	C19orf21	19	761679	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08		761679	58367304	746	45286											
LPPR3	79948	broad.mit.edu	37	chr19	814883	814883	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggggagttgggggtccggctCaccgtgcagacaggatggcg	20	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	814883	G	G	814883	1	3	32	0	1	0	0	0	0	0	0	0	9013	841	29	4		4	LPPR3	19	814883	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	53204	814883	58314100	747	45287											
ABCA7	10347	broad.mit.edu	37	chr19	1061853	1061853	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtgacgggggacacattgGccagcaggggcgaggctgtg	20	8	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1061853	C	C	1061853	3	2	32	1	0	0	0	0	1	0	0	0	37	1203	42	4	5694	4	ABCA7	19	1061853	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	246970	1061853	58067130	748	45288											
C19orf29	58509	broad.mit.edu	37	chr19	3611929	3611929	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccccagggccgtcaccgccGatagcggtagcgcttgaagt	13	14	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3611929	A	A	3611929	3	1	32	1	0	0	0	0	1	0	0	0	1937	1057	37	4	11	4	C19orf29	19	3611929	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2550076	3611929	55517054	749	45289											
ANKRD24	170961	broad.mit.edu	37	chr19	4207248	4207248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttgcagcggctggtgGctgtctctcctgctcagagg	13	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4207248	T	T	4207248	3	4	32	1	0	0	0	0	1	0	0	0	653	1203	42	3	502	3	ANKRD24	19	4207248	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	595319	4207248	54921735	750	45290											
FSD1	79187	broad.mit.edu	37	chr19	4306148	4306148	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgtgggaggtctcaggttCcctctctgaacacgggcttt	12	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4306148	T	T	4306148	1	4	32	0	1	0	0	0	0	0	0	0	6130	870	30	4		4	FSD1	19	4306148	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	98900	4306148	54822835	751	45291											
FSD1	79187	broad.mit.edu	37	chr19	4311813	4311813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaggcacagaatcccgaCcccctctcctttccgtcttg	6	18	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4311813	A	A	4311813	1	1	32	0	1	0	0	0	0	0	0	0	6130	522	18	3		3	FSD1	19	4311813	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5665	4311813	54817170	752	45292											
STAP2	55620	broad.mit.edu	37	chr19	4325383	4325383	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctctcagcagctctgttCcccacccaccatcttggttc	6	18	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4325383	T	T	4325383	1	4	32	0	1	0	0	0	0	0	0	0	15371	870	30	4		4	STAP2	19	4325383	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	13570	4325383	54803600	753	45293											
CD209	30835	broad.mit.edu	37	chr19	7806658	7806658	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaactttcttcaggtgttGagaaatccaatagagacctc	8	9	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7806658	T	T	7806658	1	4	32	0	1	0	0	0	0	0	0	0	3014	1305	45	3		3	CD209	19	7806658	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	3481275	7806658	51322325	754	45294											
MUC16	94025	broad.mit.edu	37	chr19	9090220	9090220	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctccacccactgtgtgtgcTggggttcactaaattgctga	10	11	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9090220	A	A	9090220	3	1	32	1	0	0	0	0	1	0	0	0	10067	1580	55	5	42264	5	MUC16	19	9090220	Missense_Mutation	SNP	T	TCGA-05-5428-01A-01D-1625-08	1283562	9090220	50038763	755	45295											
OR1M1	125963	broad.mit.edu	37	chr19	9204055	9204055	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcgtggggaacctgctcatCatcctggccatcagcataga	11	12	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9204055	T	T	9204055	2	4	32	1	0	0	0	0	0	0	0	1	11062	816	29	4		4	OR1M1	19	9204055	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	113835	9204055	49924928	756	45296											
COL5A3	50509	broad.mit.edu	37	chr19	10102535	10102535	+	Intron	DEL	T	-	-													accctggggagaaagtggggTttcagtgaagctaagagggg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10102535	-	-	10102535	6	5	32	0	1	1	0	1	0	0	0	0	3730	1740	60	0		0	COL5A3	19	10102535	Intron	DEL	T	TCGA-05-5428-01A-01D-1625-08	898480	10102535	49026448	757	45297											
RDH8	50700	broad.mit.edu	37	chr19	10127965	10127965	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctcaatatggcaaggtctGagcaccagctctctggcttc	9	14	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10127965	T	T	10127965	1	4	32	0	1	0	0	0	0	0	0	0	13304	1305	45	3		3	RDH8	19	10127965	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	25430	10127965	49001018	758	45298											
ICAM5	7087	broad.mit.edu	37	chr19	10402220	10402220	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctggcagccggtgggcgaGaacttcaccctgagctgtag	14	13	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10402220	A	A	10402220	2	1	32	1	0	0	0	0	0	0	0	1	7553	933	33	4		4	ICAM5	19	10402220	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	274255	10402220	48726763	759	45299											
YIPF2	78992	broad.mit.edu	37	chr19	11036359	11036359	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaaatgcacaacctcactCaccatacagatccggccgat	5	16	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11036359	T	T	11036359	1	4	32	0	1	0	0	0	0	0	0	0	17605	841	29	4		4	YIPF2	19	11036359	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	634139	11036359	48092624	760	45300											
ZNF823	55552	broad.mit.edu	37	chr19	11833307	11833307	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgagtagtttcatgatttcGaactgaactaggacaatcaa	9	6	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11833307	A	A	11833307	4	1	32	1	0	0	0	0	0	1	0	0	18308	1066	37	4	794	4	ZNF823	19	11833307	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	796948	11833307	47295676	761	45301											
CYP4F11	57834	broad.mit.edu	37	chr19	16025514	16025514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtcaggacaaggcccccCtgcctgagggacccctcttg	12	16	2	1	rs73928264	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16025514	A	A	16025514	1	1	32	0	1	0	0	0	0	0	0	0	4219	696	24	2		2	CYP4F11	19	16025514	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4192207	16025514	43103469	762	45302											
CYP4F11	57834	broad.mit.edu	37	chr19	16025572	16025572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctgaggctgtgagcacCtttggggatgacgcggccgt	15	13	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16025572	A	A	16025572	3	1	32	1	0	0	0	0	1	0	0	0	4219	695	24	2	341	2	CYP4F11	19	16025572	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	58	16025572	43103411	763	45303											
NCAN	1463	broad.mit.edu	37	chr19	19334761	19334761	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtggggagtcattctgcaaGaggtaggtctgttcttgaag	16	5	4	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19334761	A	A	19334761	1	1	32	0	1	0	0	0	0	0	0	0	10299	957	33	4		4	NCAN	19	19334761	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	3309189	19334761	39794222	764	45304											
TSHZ3	57616	broad.mit.edu	37	chr19	31769592	31769592	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgcatagctggccccattCtggtggccgtaccgattatt	10	12	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31769592	T	T	31769592	2	4	32	1	0	0	0	0	0	0	0	1	16750	912	32	4		4	TSHZ3	19	31769592	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	12434831	31769592	27359391	765	45305											
KIRREL2	84063	broad.mit.edu	37	chr19	36350469	36350469	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgatggagccacctttgtCtgccgggcccggagccaggc	15	13	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36350469	T	T	36350469	2	4	32	1	0	0	0	0	0	0	0	1	8396	900	32	4		4	KIRREL2	19	36350469	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	4580877	36350469	22778514	766	45306											
TIMM50	92609	broad.mit.edu	37	chr19	39973443	39973443	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttcctcagatccaggagtCcaggccccttatcccactcc	6	18	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39973443	A	A	39973443	1	1	32	0	1	0	0	0	0	0	0	0	16036	870	30	3		3	TIMM50	19	39973443	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	3622974	39973443	19155540	767	45307											
PSG5	5673	broad.mit.edu	37	chr19	43680272	43680272	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccctgggttttgagttgttGatggtgatgtagggcttggg	17	4	0	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43680272	T	T	43680272	2	4	32	1	0	0	0	0	0	0	0	1	12764	1280	45	3		3	PSG5	19	43680272	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	3706829	43680272	15448711	768	45308											
ZNF221	7638	broad.mit.edu	37	chr19	44471324	44471325	+	Missense_Mutation	DNP	GG	TT	TT													catgcaccagagggtccacgGgggagagcgaccctataatt							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44471325	TT	TT	44471324	3	4	32	1	0	0	0	0	1	0	0	0	17901	1232	43	2	1684	2	ZNF221	19	44471324	Missense_Mutation	DNP	GG	TCGA-05-5428-01A-01D-1625-08	791052	44471324	14657659	769	45309											
ZNF234	10780	broad.mit.edu	37	chr19	44661190	44661190	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaaagggtccacacaggaGagaaaccttacaagtgtgaa	10	8	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44661190	C	C	44661190	3	2	32	1	0	0	0	0	1	0	0	0	17913	943	33	4	1035	4	ZNF234	19	44661190	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	189866	44661190	14467793	770	45310											
ZNF226	7769	broad.mit.edu	37	chr19	44681648	44681648	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcttcacaactacagtctCatcagcgagttcacactggg	9	12	5	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44681648	G	G	44681648	3	3	32	1	0	0	0	0	1	0	0	0	17906	826	29	4	2301	4	ZNF226	19	44681648	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	20458	44681648	14447335	771	45311											
DACT3	147906	broad.mit.edu	37	chr19	47151528	47151528	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggcttccaagctagaaGctgaactgggtcaaacaggg	13	9	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47151528	T	T	47151528	1	4	32	0	1	0	0	0	0	0	0	0	4256	986	34	3		3	DACT3	19	47151528	3'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	2469880	47151528	11977455	772	45312											
AP2A1	160	broad.mit.edu	37	chr19	50309968	50309968	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaccctgcgcaccagcaagGagcccgtctcccgtcacctg	10	18	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50309968	C	C	50309968	3	2	32	1	0	0	0	0	1	0	0	0	741	1175	41	4	2981	4	AP2A1	19	50309968	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3158440	50309968	8819015	773	45313											
KLK13	26085	broad.mit.edu	37	chr19	51563277	51563277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggtgggggatagagtGgacaacttccctcacctgct	13	10	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51563277	T	T	51563277	3	4	32	1	0	0	0	0	1	0	0	0	8472	1348	47	2	532	2	KLK13	19	51563277	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	1253309	51563277	7565706	774	45314											
ZNF615	284370	broad.mit.edu	37	chr19	52497585	52497585	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatgagttctctgatggtcCattagtctggattttctgga	11	6	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52497585	T	T	52497585	3	4	32	1	0	0	0	0	1	0	0	0	18167	594	21	4	1455	4	ZNF615	19	52497585	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	934308	52497585	6631398	775	45315											
LILRB5	10990	broad.mit.edu	37	chr19	54756037	54756037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctcagtcctgccagccCttgccctgttcccactaggg	8	17	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54756037	A	A	54756037	1	1	32	0	1	0	0	0	0	0	0	0	8866	696	24	2		2	LILRB5	19	54756037	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2258452	54756037	4372946	776	45316											
LILRB4	11006	broad.mit.edu	37	chr19	55179523	55179523	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactcaggaccccagaaggCatggaagctgcctccagtag	12	12	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55179523	A	A	55179523	1	1	32	0	1	0	0	0	0	0	0	0	8865	725	25	3		3	LILRB4	19	55179523	3'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	423486	55179523	3949460	777	45317											
KIR3DL1	3811	broad.mit.edu	37	chr19	55328841	55328841	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtctctgcacagccgagatCcttgttcctgggggcaggta	13	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55328841	A	A	55328841	1	1	32	0	1	0	0	0	0	0	0	0	8391	870	30	3		3	KIR3DL1	19	55328841	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	149318	55328841	3800142	778	45318											
CCDC106	29903	broad.mit.edu	37	chr19	56163807	56163807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccctcagtgaaggacgccGacggggtcctctgccggtac	13	15	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56163807	T	T	56163807	3	4	32	1	0	0	0	0	1	0	0	0	2767	1058	37	3	556	3	CCDC106	19	56163807	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	834966	56163807	2965176	779	45319											
ZIM3	114026	broad.mit.edu	37	chr19	57653932	57653932	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggttagcacagttaattctGagcaagaggaacgtgggtca	13	6	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57653932	C	C	57653932	1	2	32	0	1	0	0	0	0	0	0	0	17811	1305	45	4		4	ZIM3	19	57653932	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	1490125	57653932	1475051	780	45320											
DUXA	503835	broad.mit.edu	37	chr19	57670747	57670747	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttattgggcctaggcccAggattattacttacttctgt	8	9	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57670747	C	C	57670747	1	2	32	0	1	0	0	0	0	0	0	0	4874	203	7	5		5	DUXA	19	57670747	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	16815	57670747	1458236	781	45321											
ZIK1	284307	broad.mit.edu	37	chr19	58101828	58101828	+	Frame_Shift_Del	DEL	G	-	-													attacaagtcaggtgaatgtGggaaggcttccaggcacaaa							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58101828	-	-	58101828	7	5	32	1	0	1	0	1	0	0	0	0	17809	1348	47	0	663	0	ZIK1	19	58101828	Frame_Shift_Del	DEL	G	TCGA-05-5428-01A-01D-1625-08	431081	58101828	1027155	782	45322											
ANGPT4	51378	broad.mit.edu	37	chr20	861993	861993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagagaaggggccaagtgGgcatgcctgcctgctttgtg	16	8	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	861993	T	T	861993	1	4	32	0	1	0	0	0	0	0	0	0	612	1247	43	2		2	ANGPT4	20	861993	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08		861993	62163527	783	45323											
TGM3	7053	broad.mit.edu	37	chr20	2297707	2297707	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattttgggggggtggtttcTgcccagatcaatagcaatga	13	7	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2297707	A	A	2297707	1	1	32	0	1	0	0	0	0	0	0	0	15954	1595	55	5		5	TGM3	20	2297707	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	1435714	2297707	60727813	784	45324											
HAO1	54363	broad.mit.edu	37	chr20	7920967	7920967	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatattatcagccaaagtttCttcatcatttgccccagacc	4	12	4	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7920967	A	A	7920967	4	1	32	1	0	0	0	0	0	1	0	0	7017	922	32	3	1041	3	HAO1	20	7920967	Nonsense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	5623260	7920967	55104553	785	45325											
PCSK2	5126	broad.mit.edu	37	chr20	17446099	17446099	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttaatcacctctttggctAcggggtccttgatgcaggtg	11	9	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17446099	G	G	17446099	3	3	32	1	0	0	0	0	1	0	0	0	11695	391	14	5	1373	5	PCSK2	20	17446099	Missense_Mutation	SNP	A	TCGA-05-5428-01A-01D-1625-08	9525132	17446099	45579421	786	45326											
CST7	8530	broad.mit.edu	37	chr20	24939542	24939542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccctgtgcccagtaacCcagtccctttgctccctcca	5	21	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24939542	A	A	24939542	1	1	32	0	1	0	0	0	0	0	0	0	4011	638	22	2		2	CST7	20	24939542	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	7493443	24939542	38085978	787	45327											
DUSP15	128853	broad.mit.edu	37	chr20	30451818	30451818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatagggtagggagcactgCagggcagacctctcaggagt	15	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30451818	A	A	30451818	1	1	32	0	1	0	0	0	0	0	0	0	4855	725	25	3		3	DUSP15	20	30451818	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	5512276	30451818	32573702	788	45328											
XKR7	343702	broad.mit.edu	37	chr20	30584765	30584765	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaccgacttctactcgctCatcatggtctgcgtagtggc	9	13	5	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30584765	T	T	30584765	2	4	32	1	0	0	0	0	0	0	0	1	17563	813	29	4		4	XKR7	20	30584765	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	132947	30584765	32440755	789	45329											
KIAA1755	85449	broad.mit.edu	37	chr20	36874534	36874534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggatggagggtcctgtgGgggacaggaggagggggtga	25	3	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36874534	T	T	36874534	1	4	32	0	1	0	0	0	0	0	0	0	8327	1247	43	2		2	KIAA1755	20	36874534	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	6289769	36874534	26150986	790	45330											
PPP1R16B	26051	broad.mit.edu	37	chr20	37529399	37529399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcccttaaatcaatgcaGgcgaacagattagctacgca	9	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37529399	T	T	37529399	1	4	32	0	1	0	0	0	0	0	0	0	12467	1015	35	2		2	PPP1R16B	20	37529399	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	654865	37529399	25496121	791	45331											
L3MBTL	26013	broad.mit.edu	37	chr20	42164643	42164643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgcatgcaggcgactggGgtccaccaaaacacactcca	9	14	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42164643	T	T	42164643	1	4	32	0	1	0	0	0	0	0	0	0	8663	1247	43	2		2	L3MBTL	20	42164643	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	4635244	42164643	20860877	792	45332											
MYBL2	4605	broad.mit.edu	37	chr20	42311239	42311239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaccgagtttgccctctcGtgtagcaaagggaaaccgcc	13	12	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42311239	T	T	42311239	1	4	32	0	1	0	0	0	0	0	0	0	10104	1160	40	3		3	MYBL2	20	42311239	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	146596	42311239	20714281	793	45333											
SLC12A5	57468	broad.mit.edu	37	chr20	44676138	44676138	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgcctggccctcatgttCatctgctcctggtattatgc	8	14	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44676138	T	T	44676138	2	4	32	1	0	0	0	0	0	0	0	1	14499	825	29	4		4	SLC12A5	20	44676138	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	2364899	44676138	18349382	794	45334											
PREX1	57580	broad.mit.edu	37	chr20	47274826	47274826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggcctacggccagcccCaccgtggcccccacaggacc	13	19	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47274826	A	A	47274826	1	1	32	0	1	0	0	0	0	0	0	0	12582	609	21	2		2	PREX1	20	47274826	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2598688	47274826	15750694	795	45335											
ZNFX1	57169	broad.mit.edu	37	chr20	47869173	47869173	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaattatttttatttatAtgagacctcttttgctggca	5	5	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47869173	G	G	47869173	1	3	32	0	1	0	0	0	0	0	0	0	18334	464	16	5		5	ZNFX1	20	47869173	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	594347	47869173	15156347	796	45336											
RNF114	55905	broad.mit.edu	37	chr20	48561884	48561884	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgcctgttgcaaggtcctCactaacttatgggctctgat	9	10	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48561884	T	T	48561884	1	4	32	0	1	0	0	0	0	0	0	0	13540	841	29	4		4	RNF114	20	48561884	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	692711	48561884	14463636	797	45337											
TSHZ2	128553	broad.mit.edu	37	chr20	51872733	51872733	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcttaggaaaacgggcggGacaaaatttctgaaaaacat	10	7	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51872733	T	T	51872733	2	4	32	1	0	0	0	0	0	0	0	1	16749	1161	41	3		3	TSHZ2	20	51872733	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	3310849	51872733	11152787	798	45338											
BCAS1	8537	broad.mit.edu	37	chr20	52561526	52561526	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttgagcatccaacatccGctttggtccctggagaaaaa	8	12	0	2	rs147771144		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52561526	A	A	52561526	3	1	32	1	0	0	0	0	1	0	0	0	1355	1086	38	4	68	4	BCAS1	20	52561526	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	688793	52561526	10463994	799	45339											
MC3R	4159	broad.mit.edu	37	chr20	54823834	54823834	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggagattttgtctttcctGtgagcagcagcagcttccta	11	9	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54823834	C	C	54823834	1	2	32	0	1	0	0	0	0	0	0	0	9458	1392	48	4		4	MC3R	20	54823834	5'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	2262308	54823834	8201686	800	45340											
CTCFL	140690	broad.mit.edu	37	chr20	56083588	56083588	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tataatcgggtttaaactctCctggtgtgacactgtcctcc	8	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56083588	G	G	56083588	1	3	32	0	1	0	0	0	0	0	0	0	4035	870	30	4		4	CTCFL	20	56083588	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1259754	56083588	6941932	801	45341											
CDH26	60437	broad.mit.edu	37	chr20	58571841	58571841	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaatgtcatgctttgtgtCttatggcaaggaattcacta	10	6	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58571841	T	T	58571841	1	4	32	0	1	0	0	0	0	0	0	0	3140	928	32	4		4	CDH26	20	58571841	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	2488253	58571841	4453679	802	45342											
COL9A3	1299	broad.mit.edu	37	chr20	61461022	61461023	+	Missense_Mutation	DNP	CC	AA	AA													aggccggcccctctggagagCcaggcgtccctgtgagtatc							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	61461023	AA	AA	61461022	3	1	32	1	0	0	0	0	1	0	0	0	3741	739	26	3	1178	3	COL9A3	20	61461022	Missense_Mutation	DNP	CC	TCGA-05-5428-01A-01D-1625-08	2889181	61461022	1564498	803	45343											
ARFGAP1	55738	broad.mit.edu	37	chr20	61907553	61907553	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttggggttcacctcagGtcagtgtcctgccgctctgg	15	12	4	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61907553	T	T	61907553	5	4	32	1	0	0	0	0	0	0	1	0	851	1275	44	3	177	3	ARFGAP1	20	61907553	Splice_Site	SNP	G	TCGA-05-5428-01A-01D-1625-08	446531	61907553	1117967	804	45344											
KCNQ2	3785	broad.mit.edu	37	chr20	62046380	62046380	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaggctctggtcggcgctGggtgaccgcctcacagtctg	15	13	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62046380	T	T	62046380	2	4	32	1	0	0	0	0	0	0	0	1	8153	1335	47	2		2	KCNQ2	20	62046380	Silent	SNP	G	TCGA-05-5428-01A-01D-1625-08	138827	62046380	979140	805	45345											
KCNQ2	3785	broad.mit.edu	37	chr20	62073746	62073746	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaaagggaaaaccacaatGaccacaactcaccaggcccc	9	14	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62073746	A	A	62073746	1	1	32	0	1	0	0	0	0	0	0	0	8153	1305	45	4		4	KCNQ2	20	62073746	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	27366	62073746	951774	806	45346											
TPTE	7179	broad.mit.edu	37	chr21	10914484	10914484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagttaggttggctagcGtgaacatcaatatgtctcac	9	7	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10914484	T	T	10914484	1	4	32	0	1	0	0	0	0	0	0	0	16554	1160	40	3		3	TPTE	21	10914484	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08		10914484	37215411	807	45347											
MRPL39	54148	broad.mit.edu	37	chr21	26966223	26966223	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctgtgtagcttgactattCtctcagggttctgagatgcc	10	10	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26966223	G	G	26966223	3	3	32	1	0	0	0	0	1	0	0	0	9896	913	32	4	376	4	MRPL39	21	26966223	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	16051739	26966223	21163672	808	45348											
JAM2	58494	broad.mit.edu	37	chr21	27056325	27056325	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcacgagagtgactcgtgtGatgttattttctatttgttg	10	6	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27056325	A	A	27056325	1	1	32	0	1	0	0	0	0	0	0	0	8013	1305	45	4		4	JAM2	21	27056325	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	90102	27056325	21073570	809	45349											
CCT8	10694	broad.mit.edu	37	chr21	30445969	30445969	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaccgcggaggaagcgagGagcacgcacagccttctggg	16	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30445969	A	A	30445969	1	1	32	0	1	0	0	0	0	0	0	0	2990	1189	41	4		4	CCT8	21	30445969	5'UTR	SNP	G	TCGA-05-5428-01A-01D-1625-08	3389644	30445969	17683926	810	45350											
KRTAP6-1	337966	broad.mit.edu	37	chr21	31986171	31986171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaggcctccatagccaCagaacccatagccaggggtg	11	15	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31986171	A	A	31986171	3	1	32	1	0	0	0	0	1	0	0	0	8641	478	17	3	166	3	KRTAP6-1	21	31986171	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1540202	31986171	16143724	811	45351											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253335	32253335	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgtggagtcttgattcgctCactggctcctacacacttag	9	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32253335	A	A	32253335	1	1	32	0	1	0	0	0	0	0	0	0	8588	841	29	3		3	KRTAP11-1	21	32253335	3'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	267164	32253335	15876560	812	45352											
TIAM1	7074	broad.mit.edu	37	chr21	32526612	32526612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcgcagatcaccttgcGcagcttatctgcatccgaga	10	13	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32526612	T	T	32526612	3	4	32	1	0	0	0	0	1	0	0	0	16013	1087	38	3	1699	3	TIAM1	21	32526612	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	273277	32526612	15603283	813	45353											
SON	6651	broad.mit.edu	37	chr21	34932301	34932301	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccacaaagtgaaaagcatcGaattgcagagaacagtgtta	10	7	0	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34932301	T	T	34932301	1	4	32	0	1	0	0	0	0	0	0	0	15040	1058	37	3		3	SON	21	34932301	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2405689	34932301	13197594	814	45354											
CHAF1B	8208	broad.mit.edu	37	chr21	37766778	37766778	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggcctcccaaagtgctggGattacaggggtaagctgcta	13	9	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37766778	T	T	37766778	1	4	32	0	1	0	0	0	0	0	0	0	3343	1189	41	3		3	CHAF1B	21	37766778	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	2834477	37766778	10363117	815	45355											
DSCAM	1826	broad.mit.edu	37	chr21	41560998	41560998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatcacctcttctcccaCctccttggtggacacaagat	6	14	3	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41560998	A	A	41560998	3	1	32	1	0	0	0	0	1	0	0	0	4808	507	18	3	3602	3	DSCAM	21	41560998	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3794220	41560998	6568897	816	45356											
RRP1	8568	broad.mit.edu	37	chr21	45211119	45211119	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctgccccccagttgcctTtaccgtaagtgggactttgg	10	12	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45211119	C	C	45211119	1	2	32	0	1	0	0	0	0	0	0	0	13796	1856	64	5		5	RRP1	21	45211119	Intron	SNP	T	TCGA-05-5428-01A-01D-1625-08	3650121	45211119	2918776	817	45357											
AIRE	326	broad.mit.edu	37	chr21	45710773	45710773	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaatagggatggccccGgggggtgtctgttggagacc	16	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45710773	C	C	45710773	1	2	32	0	1	0	0	0	0	0	0	0	437	1103	39	4		4	AIRE	21	45710773	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	499654	45710773	2419122	818	45358											
LSS	4047	broad.mit.edu	37	chr21	47648438	47648438	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtccacgtctgccggcccctCtcgcagttgagtcgccagcg	12	17	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47648438	G	G	47648438	3	3	32	1	0	0	0	0	1	0	0	0	9152	912	32	4	2192	4	LSS	21	47648438	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	1937665	47648438	481457	819	45359											
CCT8L2	150160	broad.mit.edu	37	chr22	17072901	17072901	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgtgggccaccagcttggtCaagtggtccatgggggacag	17	10	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17072901	A	A	17072901	3	1	32	1	0	0	0	0	1	0	0	0	2991	825	29	3	1137	3	CCT8L2	22	17072901	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08		17072901	34231665	820	45360											
CLTCL1	8218	broad.mit.edu	37	chr22	19213771	19213771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggtgagtgtggaccaCagccctcttgatgtcataga	14	8	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19213771	A	A	19213771	3	1	32	1	0	0	0	0	1	0	0	0	3599	478	17	3	3088	3	CLTCL1	22	19213771	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	2140870	19213771	32090795	821	45361											
SCUBE1	80274	broad.mit.edu	37	chr22	43603968	43603968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgttctgcttccaggtctGtacctgccaggtcgcagctc	10	14	2	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43603968	T	T	43603968	1	4	32	0	1	0	0	0	0	0	0	0	14057	1392	48	3		3	SCUBE1	22	43603968	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	24390197	43603968	7700598	822	45362											
GRAMD4	23151	broad.mit.edu	37	chr22	47069627	47069627	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggccggcctgggtaaagagGaggacgccggtcgcttccac	16	13	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47069627	A	A	47069627	3	1	32	1	0	0	0	0	1	0	0	0	6818	1175	41	4	1354	4	GRAMD4	22	47069627	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3465659	47069627	4234939	823	45363											
MXRA5	25878	broad.mit.edu	37	chrX	3248479	3248479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggaaaacaaaacaaaaCaaaaggatcctgtttatagt	8	6	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3248479	A	A	3248479	1	1	32	0	1	0	0	0	0	0	0	0	10097	493	17	3		3	MXRA5	23	3248479	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08		3248479	152022081	824	45364											
TLR8	51311	broad.mit.edu	37	chrX	12939284	12939284	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttaactgatagcctatctGactttacatcttcccttcgg	5	11	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12939284	T	T	12939284	3	4	32	1	0	0	0	0	1	0	0	0	16080	1290	45	3	2131	3	TLR8	23	12939284	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	9690805	12939284	142331276	825	45365											
CTPS2	56474	broad.mit.edu	37	chrX	16696555	16696555	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtttcagtgatcttctccaGatcaatggagtctatgtact	9	8	5	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16696555	C	C	16696555	3	2	32	1	0	0	0	0	1	0	0	0	4057	933	33	4	772	4	CTPS2	23	16696555	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	3757271	16696555	138574005	826	45366											
MBTPS2	51360	broad.mit.edu	37	chrX	21896315	21896315	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactaaaaaataagcatataGagctaaaatggaatctatgg	7	4	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21896315	A	A	21896315	1	1	32	0	1	0	0	0	0	0	0	0	9455	957	33	4		4	MBTPS2	23	21896315	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	5199760	21896315	133374245	827	45367											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29417357	29417357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtcagagaagatgacattgGaaattatacctgtgaattaa	9	4	1	4			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29417357	T	T	29417357	3	4	32	1	0	0	0	0	1	0	0	0	7731	1174	41	3	649	3	IL1RAPL1	23	29417357	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	7521042	29417357	125853203	828	45368											
AKAP4	8852	broad.mit.edu	37	chrX	49962166	49962166	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttctcagcagcttcccaccGattctgactctgagcagaga	8	14	3	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49962166	T	T	49962166	1	4	32	0	1	0	0	0	0	0	0	0	453	1073	37	3		3	AKAP4	23	49962166	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	20544809	49962166	105308394	829	45369											
PHF8	23133	broad.mit.edu	37	chrX	54020195	54020195	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcctttcttctttgaacCatttttggagggcagtgaca	10	9	2	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54020195	T	T	54020195	3	4	32	1	0	0	0	0	1	0	0	0	11935	594	21	4	1819	4	PHF8	23	54020195	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	4058029	54020195	101250365	830	45370											
KIF4A	24137	broad.mit.edu	37	chrX	69615735	69615735	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctacattccccagaaatcCtcatagctttggaggattac	6	12	2	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69615735	T	T	69615735	1	4	32	0	1	0	0	0	0	0	0	0	8373	696	24	4		4	KIF4A	23	69615735	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	15595540	69615735	85654825	831	45371											
TAF1	6872	broad.mit.edu	37	chrX	70608074	70608074	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaaataaaatacacttgGtttgttgggcaggtttttat	9	5	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70608074	T	T	70608074	1	4	32	0	1	0	0	0	0	0	0	0	15632	1276	44	3		3	TAF1	23	70608074	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	992339	70608074	84662486	832	45372											
ATP7A	538	broad.mit.edu	37	chrX	77301004	77301004	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtttggttttgcagccctgGatgggatctgcagcaatggc	15	8	1	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77301004	A	A	77301004	4	1	32	1	0	0	0	0	0	1	0	0	1194	1183	41	4	4243	4	ATP7A	23	77301004	Nonsense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	6692930	77301004	77969556	833	45373											
NOX1	27035	broad.mit.edu	37	chrX	100117173	100117173	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttacctcagggggatgcCcttcaaacttagggcgccta	10	13	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100117173	T	T	100117173	3	4	32	1	0	0	0	0	1	0	0	0	10651	623	22	4	931	4	NOX1	23	100117173	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	22816169	100117173	55153387	834	45374											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104961571	104961571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcaactccaaatcattcCattctctaaaagctgatctt	3	11	3	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104961571	A	A	104961571	1	1	32	0	1	0	0	0	0	0	0	0	7732	609	21	2		2	IL1RAPL2	23	104961571	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	4844398	104961571	50308989	835	45375											
COL4A6	1288	broad.mit.edu	37	chrX	107422489	107422489	+	Missense_Mutation	SNP	G	T	T													gtctccaagaaatcctttgtGccctgttaatccttgtaggc							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107422489	T	T	107422489	3	4	32	1	0	0	0	0	1	0	0	0	3727	1319	46	3	2841	3	COL4A6	23	107422489	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2460918	107422489	47848071	836	45376	226	2									
COL4A6	1288	broad.mit.edu	37	chrX	107422492	107422492	+	Missense_Mutation	SNP	C	T	T													tccaagaaatcctttgtgccCtgttaatccttgtaggcctt							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107422492	T	T	107422492	3	4	32	1	0	0	0	0	1	0	0	0	3727	681	24	4	2844	4	COL4A6	23	107422492	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	3	107422492	47848068	837	45377	226	2									
COL4A5	1287	broad.mit.edu	37	chrX	107816961	107816961	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatccctcaacctttagtaCtctctgtttttgtcataaaa	3	11	3	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107816961	T	T	107816961	1	4	32	0	1	0	0	0	0	0	0	0	3726	580	20	4		4	COL4A5	23	107816961	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	394469	107816961	47453599	838	45378											
COL4A5	1287	broad.mit.edu	37	chrX	107911741	107911741	+	Intron	DEL	C	-	-													tcctgggagaccaggtatgtCcgtgagtggtaggagaatgg							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107911741	-	-	107911741	6	5	32	0	1	1	0	1	0	0	0	0	3726	870	30	0		0	COL4A5	23	107911741	Intron	DEL	C	TCGA-05-5428-01A-01D-1625-08	94780	107911741	47358819	839	45379											
COL4A5	1287	broad.mit.edu	37	chrX	107923874	107923874	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accttcctcccctcgctgcaAtttttttgtaacattaatga	4	12	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107923874	T	T	107923874	1	4	32	0	1	0	0	0	0	0	0	0	3726	116	4	5		5	COL4A5	23	107923874	Intron	SNP	A	TCGA-05-5428-01A-01D-1625-08	12133	107923874	47346686	840	45380											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698292	111698292	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagttagaaagttgtgggatCatatctgggcctgacaagag	13	6	2	3			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111698292	A	A	111698292	2	1	32	1	0	0	0	0	0	0	0	1	17710	816	29	3		3	ZCCHC16	23	111698292	Silent	SNP	C	TCGA-05-5428-01A-01D-1625-08	3774418	111698292	43572268	841	45381											
RNF113A	7737	broad.mit.edu	37	chrX	119005672	119005673	+	5'UTR	INS	-	A	A													gctccgccgggagtcgaagcINSaaaagacactgacggaagag							TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119005673	A	A	119005672	6	5	32	0	1	1	1	0	0	0	0	0	13538	725	25	0		0	RNF113A	23	119005672	5'UTR	INS	-	TCGA-05-5428-01A-01D-1625-08	7307380	119005672	36264888	842	45382											
ZNF75D	7626	broad.mit.edu	37	chrX	134426361	134426361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccactgctgttcctccCaagagcactgcctcctttcc	9	17	0	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134426361	A	A	134426361	3	1	32	1	0	0	0	0	1	0	0	0	18263	593	21	2	1098	2	ZNF75D	23	134426361	Missense_Mutation	SNP	C	TCGA-05-5428-01A-01D-1625-08	15420689	134426361	20844199	843	45383											
FMR1	2332	broad.mit.edu	37	chrX	147009969	147009969	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcctttttttaaacccagGttgtacattcccgtgtggat	7	9	0	0			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147009969	A	A	147009969	1	1	32	0	1	0	0	0	0	0	0	0	6018	1276	44	4		4	FMR1	23	147009969	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	12583608	147009969	8260591	844	45384											
AFF2	2334	broad.mit.edu	37	chrX	147733751	147733751	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcacccaactcatttccagGggaatatattttacaagtga	7	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147733751	C	C	147733751	1	2	32	0	1	0	0	0	0	0	0	0	357	1247	43	4		4	AFF2	23	147733751	Intron	SNP	G	TCGA-05-5428-01A-01D-1625-08	723782	147733751	7536809	845	45385											
MAGEA11	4110	broad.mit.edu	37	chrX	148770567	148770567	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacactggacccctttcaTagaggtgggtgctatgcaag	12	9	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148770567	G	G	148770567	1	3	32	0	1	0	0	0	0	0	0	0	9253	1421	49	5		5	MAGEA11	23	148770567	5'UTR	SNP	T	TCGA-05-5428-01A-01D-1625-08	1036816	148770567	6499993	846	45386											
CNGA2	1260	broad.mit.edu	37	chrX	150912097	150912097	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgggaaatgtgggctccatGatctccaacatgaatgccac	11	10	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912097	A	A	150912097	3	1	32	1	0	0	0	0	1	0	0	0	3629	1290	45	4	1144	4	CNGA2	23	150912097	Missense_Mutation	SNP	G	TCGA-05-5428-01A-01D-1625-08	2141530	150912097	4358463	847	45387											
CSAG1	158511	broad.mit.edu	37	chrX	151908930	151908930	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccatcaacaccaaagaggCgaggaaggggaaagcatcct	11	11	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151908930	T	T	151908930	5	4	32	1	0	0	0	0	0	0	1	0	3958	782	27	4	175	4	CSAG1	23	151908930	Splice_Site	SNP	C	TCGA-05-5428-01A-01D-1625-08	996833	151908930	3361630	848	45388											
CSAG1	158511	broad.mit.edu	37	chrX	151909231	151909231	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaccgcttcaaaaaaacCtgaggaatggagtgggccaa	11	10	1	1			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151909231	A	A	151909231	1	1	32	0	1	0	0	0	0	0	0	0	3958	696	24	2		2	CSAG1	23	151909231	3'UTR	SNP	C	TCGA-05-5428-01A-01D-1625-08	301	151909231	3361329	849	45389											
ABCD1	215	broad.mit.edu	37	chrX	153001552	153001552	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgccccgccacccacccctCtggggctttgcagatgcaga	10	19	1	2			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153001552	T	T	153001552	1	4	32	0	1	0	0	0	0	0	0	0	60	928	32	4		4	ABCD1	23	153001552	Intron	SNP	C	TCGA-05-5428-01A-01D-1625-08	1092321	153001552	2269008	850	45390											
CHD5	26038	broad.mit.edu	37	chr1	6196778	6196778	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctggggtctggcggccagCgccacctaccttggactggt	14	14	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6196778	T	T	6196778	1	4	33	0	1	0	0	0	0	0	0	0	3359	783	27	4		4	CHD5	1	6196778	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08		6196778	243053843	1	45391											
KLHL21	9903	broad.mit.edu	37	chr1	6655560	6655561	+	Frame_Shift_Ins	INS	-	A	A													ttacctgattcatggacgggINSatcttgtcccattcgttcct							TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6655561	A	A	6655560	7	5	33	1	0	1	1	0	0	0	0	0	8447	1164	41	0	316	0	KLHL21	1	6655560	Frame_Shift_Ins	INS	-	TCGA-05-5429-01A-01D-1625-08	458782	6655560	242595061	2	45392											
CSF3R	1441	broad.mit.edu	37	chr1	36932904	36932904	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacacttggccagaggggaTtcttcctgctggagaagggg	17	8	1	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36932904	C	C	36932904	3	2	33	1	0	0	0	0	1	0	0	0	3971	1493	52	5	741	5	CSF3R	1	36932904	Missense_Mutation	SNP	T	TCGA-05-5429-01A-01D-1625-08	30277344	36932904	212317717	3	45393											
RLF	6018	broad.mit.edu	37	chr1	40627199	40627199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcgccccgtatctccagCgccgggagcctcgggactgc	12	17	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40627199	A	A	40627199	3	1	33	1	0	0	0	0	1	0	0	0	13500	768	27	3	130	3	RLF	1	40627199	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	3694295	40627199	208623422	4	45394											
LOC200030	200030	broad.mit.edu	37	chr1	148346485	148346485	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttttcctacaagtacaAgaaggatgaaattatttttg	7	5	1	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148346485	G	G	148346485	1	3	33	0	1	0	0	0	0	0	0	0	8950	87	3	5		5	LOC200030	1	148346485	Intron	SNP	A	TCGA-05-5429-01A-01D-1625-08	107719286	148346485	100904136	5	45395											
NTRK1	4914	broad.mit.edu	37	chr1	156848861	156848861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggatcgccttcctcaggCtcctgggagttctatcctcc	11	14	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156848861	A	A	156848861	1	1	33	0	1	0	0	0	0	0	0	0	10801	812	28	3		3	NTRK1	1	156848861	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	8502376	156848861	92401760	6	45396											
CFH	3075	broad.mit.edu	37	chr1	196706690	196706690	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caagaaagttatgcacatggGactaaattgagttatacttg	9	5	0	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196706690	C	C	196706690	2	2	33	1	0	0	0	0	0	0	0	1	3313	1161	41	4		4	CFH	1	196706690	Silent	SNP	G	TCGA-05-5429-01A-01D-1625-08	39857829	196706690	52543931	7	45397											
KMO	8564	broad.mit.edu	37	chr1	241728274	241728275	+	Intron	INS	-	T	T													cactaatcaatcatatattcINSttttttctgcagtatgccat					rs149668302	by1000genomes	TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241728275	T	T	241728274	6	5	33	0	1	1	1	0	0	0	0	0	8495	928	32	0		0	KMO	1	241728274	Intron	INS	-	TCGA-05-5429-01A-01D-1625-08	45021584	241728274	7522347	8	45398											
TRIM58	25893	broad.mit.edu	37	chr1	248039632	248039632	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagatggatcttatatctaCacattcaaccaactcttctc	3	12	5	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248039632	G	G	248039632	4	3	33	1	0	0	0	0	0	1	0	0	16656	489	17	4	1324	4	TRIM58	1	248039632	Nonsense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	6311358	248039632	1210989	9	45399											
PXDN	7837	broad.mit.edu	37	chr2	1653369	1653369	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccgagcagttgttcacgCgccggtgggcggtacagccc	15	13	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1653369	T	T	1653369	3	4	33	1	0	0	0	0	1	0	0	0	12955	768	27	4	2284	4	PXDN	2	1653369	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08		1653369	241546004	10	45400											
GKN2	200504	broad.mit.edu	37	chr2	69173459	69173459	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcaaccacttcccccTtatacaaagggatatgtttg	6	10	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69173459	G	G	69173459	3	3	33	1	0	0	0	0	1	0	0	0	6489	1609	56	5	113	5	GKN2	2	69173459	Missense_Mutation	SNP	T	TCGA-05-5429-01A-01D-1625-08	67520090	69173459	174025914	11	45401											
DQX1	165545	broad.mit.edu	37	chr2	74751022	74751023	+	Intron	INS	-	T	T													caggctcattttgcaggctgINSttttttttgttttgttttgt					rs143229792	by1000genomes	TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74751023	T	T	74751022	6	5	33	0	1	1	1	0	0	0	0	0	4791	1392	48	0		0	DQX1	2	74751022	Intron	INS	-	TCGA-05-5429-01A-01D-1625-08	5577563	74751022	168448351	12	45402											
MARCO	8685	broad.mit.edu	37	chr2	119752091	119752091	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcaggcgtggagtgcagcGtctgacccggaaaccctttc	13	13	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119752091	A	A	119752091	3	1	33	1	0	0	0	0	1	0	0	0	9403	1145	40	4	1624	4	MARCO	2	119752091	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	45001069	119752091	123447282	13	45403											
STAT1	6772	broad.mit.edu	37	chr2	191873763	191873763	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagaaaagcgactatattGatcatccagctgtgacagga	9	8	1	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191873763	A	A	191873763	4	1	33	1	0	0	0	0	0	1	0	0	15382	1299	45	4	2145	4	STAT1	2	191873763	Nonsense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	72121672	191873763	51325610	14	45404											
COL6A3	1293	broad.mit.edu	37	chr2	238280738	238280738	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgcccacgttgatctgccGccctcccttgggcctcagcc	9	18	2	1	rs140330124		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238280738	A	A	238280738	3	1	33	1	0	0	0	0	1	0	0	0	3733	1086	38	4	5802	4	COL6A3	2	238280738	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	46406975	238280738	4918635	15	45405											
PER2	8864	broad.mit.edu	37	chr2	239157636	239157636	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacagaaaagttgcaaagaCagtacagagaatccccatca	8	9	1	4			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239157636	A	A	239157636	1	1	33	0	1	0	0	0	0	0	0	0	11824	493	17	3		3	PER2	2	239157636	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	876898	239157636	4041737	16	45406											
RBM5	10181	broad.mit.edu	37	chr3	50131118	50131118	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttcaaagagtacagggTgatgttaattgtgattttgt	11	3	1	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50131118	G	G	50131118	1	3	33	0	1	0	0	0	0	0	0	0	13251	1711	59	5		5	RBM5	3	50131118	Intron	SNP	T	TCGA-05-5429-01A-01D-1625-08		50131118	147891312	17	45407											
ARHGEF3	50650	broad.mit.edu	37	chr3	56807778	56807778	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttaatggcgtggccttcaCgggcgggatgaggtttgcta	15	8	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56807778	T	T	56807778	3	4	33	1	0	0	0	0	1	0	0	0	906	536	19	4	1453	4	ARHGEF3	3	56807778	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	6676660	56807778	141214652	18	45408											
CPOX	1371	broad.mit.edu	37	chr3	98310006	98310006	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgccgccacctcctgtgtAtagaaatgtaaaaaaggaga	10	8	0	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98310006	C	C	98310006	1	2	33	0	1	0	0	0	0	0	0	0	3853	464	16	5		5	CPOX	3	98310006	Intron	SNP	A	TCGA-05-5429-01A-01D-1625-08	41502228	98310006	99712424	19	45409											
MORC1	27136	broad.mit.edu	37	chr3	108788348	108788348	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttagcatcccttcctggatGtggtttaaattttgtttaca	7	7	0	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108788348	A	A	108788348	1	1	33	0	1	0	0	0	0	0	0	0	9795	1392	48	4		4	MORC1	3	108788348	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	10478342	108788348	89234082	20	45410											
KIAA1407	57577	broad.mit.edu	37	chr3	113724910	113724910	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtttaatggcacaactGccatgtattgcaggtaaagg	10	6	0	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113724910	A	A	113724910	1	1	33	0	1	0	0	0	0	0	0	0	8299	1334	46	4		4	KIAA1407	3	113724910	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	4936562	113724910	84297520	21	45411											
SLC15A2	6565	broad.mit.edu	37	chr3	121634659	121634659	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccaggcctattgggtaaCtgttattgtaagggtttccc	10	9	0	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121634659	T	T	121634659	1	4	33	0	1	0	0	0	0	0	0	0	14512	580	20	4		4	SLC15A2	3	121634659	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	7909749	121634659	76387771	22	45412											
DNAJC13	23317	broad.mit.edu	37	chr3	132182659	132182662	+	Splice_Site	DEL	TAGG	-	-													gatcaaaggatgcttacaaaTaggtaggtgatttaattcaa							TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132182662	-	-	132182659	8	5	33	1	0	1	0	1	0	0	1	0	4672	1403	49	0	1952	0	DNAJC13	3	132182659	Splice_Site	DEL	TAGG	TCGA-05-5429-01A-01D-1625-08	10548000	132182659	65839771	23	45413											
FAM190A	401145	broad.mit.edu	37	chr4	91549259	91549259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcccaacagtccatctgCggattggcctctacaaggtg	10	12	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91549259	A	A	91549259	3	1	33	1	0	0	0	0	1	0	0	0	5568	768	27	3	1826	3	FAM190A	4	91549259	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08		91549259	99605017	24	45414											
NSUN2	54888	broad.mit.edu	37	chr5	6622253	6622253	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttcatgtttttaaaaaAccaaatattctacatttaat	2	6	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6622253	C	C	6622253	1	2	33	0	1	0	0	0	0	0	0	0	10773	58	2	5		5	NSUN2	5	6622253	Intron	SNP	A	TCGA-05-5429-01A-01D-1625-08		6622253	174293007	25	45415											
EDIL3	10085	broad.mit.edu	37	chr5	83356395	83356395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggcaagagaagattaaaCataatgctattcattcctcc	6	8	1	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83356395	T	T	83356395	1	4	33	0	1	0	0	0	0	0	0	0	4955	493	17	4		4	EDIL3	5	83356395	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	76734142	83356395	97558865	26	45416											
SLC4A9	83697	broad.mit.edu	37	chr5	139751848	139751848	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggccttgtgggggtcCgaaaggccctggagagggtc	19	9	0	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139751848	T	T	139751848	4	4	33	1	0	0	0	0	0	1	0	0	14774	644	23	4	2770	4	SLC4A9	5	139751848	Nonsense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	56395453	139751848	41163412	27	45417											
PCDHB4	56131	broad.mit.edu	37	chr5	140503027	140503027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagagactcgggcaccaacGcccaggtcacctactcgctg	10	16	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140503027	A	A	140503027	3	1	33	1	0	0	0	0	1	0	0	0	11638	1087	38	4	1449	4	PCDHB4	5	140503027	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	751179	140503027	40412233	28	45418											
PCDHGA3	56112	broad.mit.edu	37	chr5	140723793	140723793	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggcggagcgcggagtcCgcatcgtctccagaggtagg	17	11	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140723793	T	T	140723793	3	4	33	1	0	0	0	0	1	0	0	0	11649	652	23	4	195	4	PCDHGA3	5	140723793	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	220766	140723793	40191467	29	45419											
ODZ2	57451	broad.mit.edu	37	chr5	167671581	167671581	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggctggcagctgtcaacGtgtcatacttcttcaatggg	13	10	4	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167671581	A	A	167671581	3	1	33	1	0	0	0	0	1	0	0	0	10930	1145	40	4	5752	4	ODZ2	5	167671581	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	26947788	167671581	13243679	30	45420											
PKHD1	5314	broad.mit.edu	37	chr6	51934410	51934410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcctgaaaggaagattGggaactaacctctattgatc	11	8	1	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51934410	T	T	51934410	1	4	33	0	1	0	0	0	0	0	0	0	12066	1363	47	2		2	PKHD1	6	51934410	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08		51934410	119180657	31	45421											
NKAIN2	154215	broad.mit.edu	37	chr6	124604066	124604066	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagttataagtgctaattatGttattaataattttatcctt	4	4	0	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124604066	C	C	124604066	1	2	33	0	1	0	0	0	0	0	0	0	10531	1392	48	4		4	NKAIN2	6	124604066	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	72669656	124604066	46511001	32	45422											
PKD1L1	168507	broad.mit.edu	37	chr7	47930104	47930104	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggtgggaacaaacaccGgtgagctgagctgtgctgaa	14	9	0	3	rs116015215	by1000genomes	TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47930104	A	A	47930104	1	1	33	0	1	0	0	0	0	0	0	0	12059	1131	39	4		4	PKD1L1	7	47930104	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08		47930104	111208559	33	45423											
ABCB1	5243	broad.mit.edu	37	chr7	87179125	87179125	+	Intron	DEL	T	-	-													catagtaggcctgcattttaTtttttgcacctctagaaagg							TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87179125	-	-	87179125	6	5	33	0	1	1	0	1	0	0	0	0	40	1508	52	0		0	ABCB1	7	87179125	Intron	DEL	T	TCGA-05-5429-01A-01D-1625-08	39249021	87179125	71959538	34	45424											
FOXP2	93986	broad.mit.edu	37	chr7	114282647	114282647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcattccatagtgaatggaCagtcttcagttctaagtgca	8	8	4	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114282647	A	A	114282647	3	1	33	1	0	0	0	0	1	0	0	0	6087	479	17	3	1114	3	FOXP2	7	114282647	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	27103522	114282647	44856016	35	45425											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651781	121651781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagacgctggaatttggtaGtgaatctggtgttctttata	12	4	2	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121651781	A	A	121651781	3	1	33	1	0	0	0	0	1	0	0	0	12922	1029	36	4	2727	4	PTPRZ1	7	121651781	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	7369134	121651781	37486882	36	45426											
SPAM1	6677	broad.mit.edu	37	chr7	123594255	123594255	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaaattgggaaaattacttCggccaaatcacttgtggggt	10	6	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123594255	T	T	123594255	3	4	33	1	0	0	0	0	1	0	0	0	15102	875	31	4	633	4	SPAM1	7	123594255	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	1942474	123594255	35544408	37	45427											
MGAM	8972	broad.mit.edu	37	chr7	141775939	141775939	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaactgaaaagagtgggaGtgtgaaatctgttcttctgt	12	4	3	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141775939	A	A	141775939	1	1	33	0	1	0	0	0	0	0	0	0	9634	1044	36	4		4	MGAM	7	141775939	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	18181684	141775939	17362724	38	45428											
BMP1	649	broad.mit.edu	37	chr8	22058878	22058878	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcttctccccactgtgccCgtccgcggaccggggaccct	10	19	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22058878	T	T	22058878	1	4	33	0	1	0	0	0	0	0	0	0	1462	667	23	4		4	BMP1	8	22058878	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08		22058878	124305144	39	45429											
TPD52	7163	broad.mit.edu	37	chr8	81083599	81083610	+	Intron	DEL	AAGCCCGAGTCC	-	-													ctcagccccgcgccgagccaAagcccgagtccaagcccgag					rs113293335		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81083610	-	-	81083599	6	5	33	0	1	1	0	1	0	0	0	0	16521	29	1	0		0	TPD52	8	81083599	Intron	DEL	AAGCCCGAGTCC	TCGA-05-5429-01A-01D-1625-08	59024721	81083599	65280423	40	45430											
ASPN	54829	broad.mit.edu	37	chr9	95233199	95233200	+	Intron	INS	-	A	A													taacagtcataacagatgacINSaaaaaaaacattgttttggg							TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95233200	A	A	95233199	6	5	33	0	1	1	1	0	0	0	0	0	1061	493	17	0		0	ASPN	9	95233199	Intron	INS	-	TCGA-05-5429-01A-01D-1625-08		95233199	45980232	41	45431											
COL15A1	1306	broad.mit.edu	37	chr9	101800821	101800821	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagagctgtgtttggcagtgGgctgagggcgttctcagtgt	18	6	1	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101800821	C	C	101800821	1	2	33	0	1	0	0	0	0	0	0	0	3704	1247	43	4		4	COL15A1	9	101800821	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	6567622	101800821	39412610	42	45432											
GARNL3	84253	broad.mit.edu	37	chr9	130027251	130027251	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtctcggaagacctagGctgtagacgtggggatttca	13	9	3	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130027251	A	A	130027251	3	1	33	1	0	0	0	0	1	0	0	0	6303	1203	42	4	97	4	GARNL3	9	130027251	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	28226430	130027251	11186180	43	45433											
WDR37	22884	broad.mit.edu	37	chr10	1175044	1175044	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctgcacaccatgttgttTtcctataacttacgtacttt	4	11	0	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1175044	G	G	1175044	1	3	33	0	1	0	0	0	0	0	0	0	17418	1856	64	5		5	WDR37	10	1175044	Intron	SNP	T	TCGA-05-5429-01A-01D-1625-08		1175044	134359703	44	45434											
ANKRD30A	91074	broad.mit.edu	37	chr10	37430990	37430990	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatcgcatgggagaaaaaaGaagacacacctagggaaatt	11	6	0	4			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37430990	T	T	37430990	4	4	33	1	0	0	0	0	0	1	0	0	658	943	33	3	1023	3	ANKRD30A	10	37430990	Nonsense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	36255946	37430990	98103757	45	45435											
GRID1	2894	broad.mit.edu	37	chr10	87487669	87487669	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttatggagctggtgaccGtacctgccatcaggggcttg	15	9	1	1	rs149876378		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87487669	A	A	87487669	2	1	33	1	0	0	0	0	0	0	0	1	6837	1140	40	4		4	GRID1	10	87487669	Silent	SNP	G	TCGA-05-5429-01A-01D-1625-08	50056679	87487669	48047078	46	45436											
GRID1	2894	broad.mit.edu	37	chr10	87487760	87487760	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatggagaaccctttgtagCgcttgggctgtcctaggatg	13	9	0	1	rs149107262		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87487760	T	T	87487760	3	4	33	1	0	0	0	0	1	0	0	0	6837	768	27	4	1672	4	GRID1	10	87487760	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	91	87487760	48046987	47	45437											
NAT10	55226	broad.mit.edu	37	chr11	34153690	34153690	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtactatgttaatagagaTaccctcttttgctaccacaa	6	9	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34153690	C	C	34153690	2	2	33	1	0	0	0	0	0	0	0	1	10268	1403	49	5		5	NAT10	11	34153690	Silent	SNP	T	TCGA-05-5429-01A-01D-1625-08		34153690	100852826	48	45438											
EHF	26298	broad.mit.edu	37	chr11	34668230	34668230	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagcatctgaagtggaaCggtgactctctctttctgtg	11	9	4	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34668230	G	G	34668230	3	3	33	1	0	0	0	0	1	0	0	0	5021	550	19	4	348	4	EHF	11	34668230	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	514540	34668230	100338286	49	45439											
ALX4	60529	broad.mit.edu	37	chr11	44297153	44297153	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcaggtagctgctgtccatCcccacagtgtcagagtcagg	11	13	3	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44297153	A	A	44297153	2	1	33	1	0	0	0	0	0	0	0	1	558	842	30	3		3	ALX4	11	44297153	Silent	SNP	C	TCGA-05-5429-01A-01D-1625-08	9628923	44297153	90709363	50	45440											
TMX2	51075	broad.mit.edu	37	chr11	57480103	57480103	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaaagatggcggtcttgGcacctctaattgctctcgtg	11	11	3	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57480103	C	C	57480103	3	2	33	1	0	0	0	0	1	0	0	0	16390	1203	42	4	15	4	TMX2	11	57480103	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	13182950	57480103	77526413	51	45441											
PRDM10	56980	broad.mit.edu	37	chr11	129814480	129814480	+	Intron	DEL	A	-	-													acagagcaagactccgtctcAaaaaaaaaaaaaaaaattgc					rs36041173		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129814480	-	-	129814480	6	5	33	0	1	1	0	1	0	0	0	0	12557	145	5	0		0	PRDM10	11	129814480	Intron	DEL	A	TCGA-05-5429-01A-01D-1625-08	72334377	129814480	5192036	52	45442											
CD163L1	283316	broad.mit.edu	37	chr12	7526177	7526177	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtcccgttatagaagacttCcaatctcccagcacagctct	7	14	2	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7526177	G	G	7526177	3	3	33	1	0	0	0	0	1	0	0	0	2998	864	30	4	916	4	CD163L1	12	7526177	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08		7526177	126325718	53	45443											
CLEC6A	93978	broad.mit.edu	37	chr12	8613240	8613240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatacaagtatatccaggaGctatggagaaagaagcagtc	11	7	0	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8613240	T	T	8613240	1	4	33	0	1	0	0	0	0	0	0	0	3552	986	34	3		3	CLEC6A	12	8613240	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	1087063	8613240	125238655	54	45444											
CAPRIN2	65981	broad.mit.edu	37	chr12	30893797	30893797	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaatctgaaaaaactagttCtccaacagttatcctcaacc	4	11	3	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30893797	T	T	30893797	1	4	33	0	1	0	0	0	0	0	0	0	2662	928	32	4		4	CAPRIN2	12	30893797	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	22280557	30893797	102958098	55	45445											
KRT7	3855	broad.mit.edu	37	chr12	52639248	52639248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggagcgtggggagctggCgctcaaggatgctcgtgcca	18	9	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52639248	T	T	52639248	3	4	33	1	0	0	0	0	1	0	0	0	8554	768	27	4	1063	4	KRT7	12	52639248	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	21745451	52639248	81212647	56	45446											
TPH2	121278	broad.mit.edu	37	chr12	72335677	72335677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggagttgtctgtcaagCaatgaaataagcagaattgc	12	5	2	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72335677	A	A	72335677	1	1	33	0	1	0	0	0	0	0	0	0	16526	725	25	3		3	TPH2	12	72335677	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	19696429	72335677	61516218	57	45447											
MYBPC1	4604	broad.mit.edu	37	chr12	102057309	102057309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcagcaggtttagatgGctatgtgctagagtattgct	14	5	0	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102057309	T	T	102057309	3	4	33	1	0	0	0	0	1	0	0	0	10105	1203	42	3	2413	3	MYBPC1	12	102057309	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	29721632	102057309	31794586	58	45448											
C12orf48	55010	broad.mit.edu	37	chr12	102569349	102569349	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttttgcaaagcaatagagGaagttgctcaggatttggat	11	5	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102569349	A	A	102569349	3	1	33	1	0	0	0	0	1	0	0	0	1705	1175	41	4	685	4	C12orf48	12	102569349	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	512040	102569349	31282546	59	45449											
RPH3A	22895	broad.mit.edu	37	chr12	113327773	113327773	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtttctggtccttcttgcGcaggaagatgagctccatag	13	9	2	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113327773	A	A	113327773	1	1	33	0	1	0	0	0	0	0	0	0	13662	1102	38	4		4	RPH3A	12	113327773	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	10758424	113327773	20524122	60	45450											
NCOR2	9612	broad.mit.edu	37	chr12	124840077	124840077	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtgggcgcggcaggacGggccgggcagtgtcatggag	23	8	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124840077	A	A	124840077	2	1	33	1	0	0	0	0	0	0	0	1	10331	1103	39	4		4	NCOR2	12	124840077	Silent	SNP	G	TCGA-05-5429-01A-01D-1625-08	11512304	124840077	9011818	61	45451											
FRY	10129	broad.mit.edu	37	chr13	32841290	32841290	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcacttcttgacatagtcGttttcattttttccagcttt	4	10	3	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32841290	A	A	32841290	1	1	33	0	1	0	0	0	0	0	0	0	6123	1160	40	4		4	FRY	13	32841290	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08		32841290	82328588	62	45452											
ITGBL1	9358	broad.mit.edu	37	chr13	102344858	102344858	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggagatttgggtttaatAgtgtgctcacctccttgaaa	10	7	1	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102344858	G	G	102344858	1	3	33	0	1	0	0	0	0	0	0	0	7972	435	15	5		5	ITGBL1	13	102344858	Intron	SNP	A	TCGA-05-5429-01A-01D-1625-08	69503568	102344858	12825020	63	45453											
NID2	22795	broad.mit.edu	37	chr14	52477578	52477578	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaggtaagagaagaattaGggaagcccagctgaccctcg	12	9	0	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52477578	A	A	52477578	1	1	33	0	1	0	0	0	0	0	0	0	10510	1015	35	4		4	NID2	14	52477578	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08		52477578	54871962	64	45454											
C14orf49	161176	broad.mit.edu	37	chr14	95932465	95932465	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttctccttcaggcccaGctggagctcgatgtggggct	13	13	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95932465	A	A	95932465	2	1	33	1	0	0	0	0	0	0	0	1	1789	962	34	4		4	C14orf49	14	95932465	Silent	SNP	G	TCGA-05-5429-01A-01D-1625-08	43454887	95932465	11417075	65	45455											
SLTM	79811	broad.mit.edu	37	chr15	59189261	59189262	+	Intron	INS	-	C	C													actatttagaatacaatcctINScatttcaaatgcagacacca							TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59189262	C	C	59189261	6	5	33	0	1	1	1	0	0	0	0	0	14868	1566	54	0		0	SLTM	15	59189261	Intron	INS	-	TCGA-05-5429-01A-01D-1625-08		59189261	43342131	66	45456											
PHKB	5257	broad.mit.edu	37	chr16	47549445	47549445	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgcagataaatgcagtgtCactttatctcctttaccttg	7	9	2	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47549445	T	T	47549445	3	4	33	1	0	0	0	0	1	0	0	0	11940	838	29	4	608	4	PHKB	16	47549445	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08		47549445	42805308	67	45457											
NKD1	85407	broad.mit.edu	37	chr16	50583306	50583306	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcacctggagccagactcAggggcttcatgtcgtccccg	13	14	2	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50583306	G	G	50583306	1	3	33	0	1	0	0	0	0	0	0	0	10536	203	7	5		5	NKD1	16	50583306	Intron	SNP	A	TCGA-05-5429-01A-01D-1625-08	3033861	50583306	39771447	68	45458											
CENPN	55839	broad.mit.edu	37	chr16	81056432	81056432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattaccgaaatgaagaaaGcttgcaattagtgaacatga	8	5	0	4			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81056432	T	T	81056432	1	4	33	0	1	0	0	0	0	0	0	0	3268	971	34	3		3	CENPN	16	81056432	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	30473126	81056432	9298321	69	45459											
NDEL1	81565	broad.mit.edu	37	chr17	8351823	8351823	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttttgtactatctgtttgCacatgttatttatttaattc	4	7	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8351823	T	T	8351823	1	4	33	0	1	0	0	0	0	0	0	0	10339	725	25	4		4	NDEL1	17	8351823	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08		8351823	72843387	70	45460											
SKAP1	8631	broad.mit.edu	37	chr17	46262234	46262234	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagacaggaaagctccctgtAtccctagagagatgcaactg	10	10	0	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46262234	T	T	46262234	1	4	33	0	1	0	0	0	0	0	0	0	14468	464	16	5		5	SKAP1	17	46262234	Intron	SNP	A	TCGA-05-5429-01A-01D-1625-08	37910411	46262234	34932976	71	45461											
RNF43	54894	broad.mit.edu	37	chr17	56440903	56440904	+	Frame_Shift_Ins	INS	-	AT	AT													tacctgctcagcagcagctcINSgatcctcagtgatgtcaaag					rs151209912		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	56440904	AT	AT	56440903	7	5	33	1	0	1	1	0	0	0	0	0	13606	884	31	0	1945	0	RNF43	17	56440903	Frame_Shift_Ins	INS	-	TCGA-05-5429-01A-01D-1625-08	10178669	56440903	24754307	72	45462											
MGAT5B	146664	broad.mit.edu	37	chr17	74921106	74921106	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaccatgcccctgcccttcGacctcatctacaccgactac	4	20	3	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74921106	A	A	74921106	3	1	33	1	0	0	0	0	1	0	0	0	9642	1058	37	4	1219	4	MGAT5B	17	74921106	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	18480203	74921106	6274104	73	45463											
SMAD4	4089	broad.mit.edu	37	chr18	48604655	48604655	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgctgctggaattggtgttGatgaccttcgtcgcttatgc	12	9	0	2	rs121912578		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48604655	A	A	48604655	3	1	33	1	0	0	0	0	1	0	0	0	14874	1290	45	4	1519	4	SMAD4	18	48604655	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08		48604655	29472593	74	45464											
CIRBP	1153	broad.mit.edu	37	chr19	1270962	1270962	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaggcaaactttttgtTggagggctgagttttgacac	13	5	0	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1270962	G	G	1270962	2	3	33	1	0	0	0	0	0	0	0	1	3464	1799	63	5		5	CIRBP	19	1270962	Silent	SNP	T	TCGA-05-5429-01A-01D-1625-08		1270962	57858021	75	45465											
RYR1	6261	broad.mit.edu	37	chr19	38951104	38951104	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatgaggctgtgctccctcGagagcgactccatcttgaac	10	14	1	3			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38951104	A	A	38951104	3	1	33	1	0	0	0	0	1	0	0	0	13879	1058	37	4	2528	4	RYR1	19	38951104	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	37680142	38951104	20177879	76	45466											
PSG1	5669	broad.mit.edu	37	chr19	43358219	43358219	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctggatcagcagggatgcAttggaatatactgtttctcg	11	7	3	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43358219	C	C	43358219	1	2	33	0	1	0	0	0	0	0	0	0	12759	232	8	5		5	PSG1	19	43358219	Intron	SNP	A	TCGA-05-5429-01A-01D-1625-08	4407115	43358219	15770764	77	45467											
RTN2	6253	broad.mit.edu	37	chr19	45996281	45996281	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcctccctatactgcccctCggccccctagccccagcctg	7	22	0	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45996281	G	G	45996281	1	3	33	0	1	0	0	0	0	0	0	0	13837	899	31	4		4	RTN2	19	45996281	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	2638062	45996281	13132702	78	45468											
CD37	951	broad.mit.edu	37	chr19	49838948	49838948	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccctgtggcccacccccGtatccgcatctcctctcccc	5	23	2	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49838948	A	A	49838948	1	1	33	0	1	0	0	0	0	0	0	0	3038	1160	40	4		4	CD37	19	49838948	Intron	SNP	G	TCGA-05-5429-01A-01D-1625-08	3842667	49838948	9290035	79	45469											
FPR1	2357	broad.mit.edu	37	chr19	52249869	52249869	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccagactggatgcaggaCgcaaacacagcggtccagag	14	11	0	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52249869	T	T	52249869	3	4	33	1	0	0	0	0	1	0	0	0	6098	536	19	4	677	4	FPR1	19	52249869	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	2410921	52249869	6879114	80	45470											
BRSK1	84446	broad.mit.edu	37	chr19	55819995	55819995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtgtttttctgcccgcCtgtgcctctaggtcccagcc	10	15	3	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55819995	A	A	55819995	1	1	33	0	1	0	0	0	0	0	0	0	1532	696	24	2		2	BRSK1	19	55819995	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	3570126	55819995	3308988	81	45471											
PROKR2	128674	broad.mit.edu	37	chr20	5283319	5283319	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacaccatccagaccaaggcGatcaggaaggaggccgtttg	13	11	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5283319	A	A	5283319	2	1	33	1	0	0	0	0	0	0	0	1	12659	1048	37	4		4	PROKR2	20	5283319	Silent	SNP	G	TCGA-05-5429-01A-01D-1625-08		5283319	57742201	82	45472											
CHGB	1114	broad.mit.edu	37	chr20	5905582	5905582	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacagcaaaagaaattggttCgggacctcatgcctccactt	8	11	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5905582	T	T	5905582	1	4	33	0	1	0	0	0	0	0	0	0	3370	899	31	4		4	CHGB	20	5905582	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	622263	5905582	57119938	83	45473											
TTLL9	164395	broad.mit.edu	37	chr20	30522516	30522516	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaagtggacgctgcagCgcttccggcagtacctggcg	15	13	0	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30522516	T	T	30522516	3	4	33	1	0	0	0	0	1	0	0	0	16860	768	27	4	871	4	TTLL9	20	30522516	Missense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	24616934	30522516	32503004	84	45474											
ADNP	23394	broad.mit.edu	37	chr20	49518760	49518760	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcacaggaaaaccaacgTcaacaaggacttaaactagg	10	9	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49518760	G	G	49518760	1	3	33	0	1	0	0	0	0	0	0	0	323	1682	58	5		5	ADNP	20	49518760	Intron	SNP	T	TCGA-05-5429-01A-01D-1625-08	18996244	49518760	13506760	85	45475											
LAMA5	3911	broad.mit.edu	37	chr20	60889674	60889674	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaggctcaggctctggGccctgcaggtagaacttgag	14	12	2	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60889674	A	A	60889674	2	1	33	1	0	0	0	0	0	0	0	1	8681	1190	42	4		4	LAMA5	20	60889674	Silent	SNP	G	TCGA-05-5429-01A-01D-1625-08	11370914	60889674	2135846	86	45476											
SFRS15	57466	broad.mit.edu	37	chr21	33073368	33073368	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttttgttcagatggttgTgtaggagttgtctttaactg	12	4	2	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33073368	C	C	33073368	2	2	33	1	0	0	0	0	0	0	0	1	14284	1683	59	5		5	SFRS15	21	33073368	Silent	SNP	T	TCGA-05-5429-01A-01D-1625-08		33073368	15056527	87	45477											
DSCAM	1826	broad.mit.edu	37	chr21	41384970	41384970	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctgtctgttataccagGgtgtaagattttgcgtaagg	12	6	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41384970	T	T	41384970	2	4	33	1	0	0	0	0	0	0	0	1	4808	1219	43	2		2	DSCAM	21	41384970	Silent	SNP	G	TCGA-05-5429-01A-01D-1625-08	8311602	41384970	6744925	88	45478											
DMC1	11144	broad.mit.edu	37	chr22	38964290	38964290	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggcaacagaaaaataatCacttctgggaaaataagaaa	9	5	2	2			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38964290	A	A	38964290	1	1	33	0	1	0	0	0	0	0	0	0	4619	841	29	3		3	DMC1	22	38964290	5'UTR	SNP	C	TCGA-05-5429-01A-01D-1625-08		38964290	12340276	89	45479											
SEPT3	55964	broad.mit.edu	37	chr22	42377837	42377837	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgacttcaacatcatggtcGttggtacggaaggctgtggg	14	8	2	0	rs149791929		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42377837	A	A	42377837	3	1	33	1	0	0	0	0	1	0	0	0	14178	1145	40	4	205	4	SEPT3	22	42377837	Missense_Mutation	SNP	G	TCGA-05-5429-01A-01D-1625-08	3413547	42377837	8926729	90	45480											
SBF1	6305	broad.mit.edu	37	chr22	50894058	50894058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggggacccaccgccctccCgcctggccactcaccaggcc	10	22	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50894058	A	A	50894058	1	1	33	0	1	0	0	0	0	0	0	0	13970	667	23	1		1	SBF1	22	50894058	Intron	SNP	C	TCGA-05-5429-01A-01D-1625-08	8516221	50894058	410508	91	45481											
PRDX4	10549	broad.mit.edu	37	chrX	23704362	23704362	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcattatgtactttggctTtaaaatgaataatttccttt	4	6	1	1			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23704362	C	C	23704362	1	2	33	0	1	0	0	0	0	0	0	0	12573	1856	64	5		5	PRDX4	23	23704362	Intron	SNP	T	TCGA-05-5429-01A-01D-1625-08		23704362	131566198	92	45482											
BMP15	9210	broad.mit.edu	37	chrX	50659038	50659038	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagggacacaggatcctaCgactccgttttatgtgtcag	10	10	1	0			TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50659038	T	T	50659038	4	4	33	1	0	0	0	0	0	1	0	0	1464	528	19	4	616	4	BMP15	23	50659038	Nonsense_Mutation	SNP	C	TCGA-05-5429-01A-01D-1625-08	26954676	50659038	104611522	93	45483											
HUWE1	10075	broad.mit.edu	37	chrX	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-													gggccagggccggggccgggGccggggccggggccggggcc					rs78801842	by1000genomes	TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652829	6	5	33	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652829	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	TCGA-05-5429-01A-01D-1625-08	2993791	53652829	101617731	94	45484											
C1orf127	148345	broad.mit.edu	37	chr1	11008388	11008388	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acggtgagaaaccagctcctCtgcagccagtgtggcccgcc	12	15	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11008388	T	T	11008388	3	4	34	1	0	0	0	0	1	0	0	0	2014	922	32	4	671	4	C1orf127	1	11008388	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08		11008388	238242233	1	45485											
HSPG2	3339	broad.mit.edu	37	chr1	22166366	22166366	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagcctccacagtcagctCagcttcttcagcttggacct	7	16	4	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22166366	T	T	22166366	3	4	34	1	0	0	0	0	1	0	0	0	7500	835	29	4	3621	4	HSPG2	1	22166366	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	11157978	22166366	227084255	2	45486											
ARID1A	8289	broad.mit.edu	37	chr1	27088651	27088651	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccacaaataggttatatgCagaggaacccccagatgccc	8	13	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27088651	T	T	27088651	4	4	34	1	0	0	0	0	0	1	0	0	915	711	25	4	2286	4	ARID1A	1	27088651	Nonsense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	4922285	27088651	222161970	3	45487											
PUM1	9698	broad.mit.edu	37	chr1	31441352	31441352	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggagaacctgggaaaggaaGacagaaataactcaaccact	10	9	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31441352	C	C	31441352	1	2	34	0	1	0	0	0	0	0	0	0	12933	957	33	4		4	PUM1	1	31441352	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	4352701	31441352	217809269	4	45488											
CSMD2	114784	broad.mit.edu	37	chr1	34080078	34080078	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtctgggcttgaagcctgtCtcctctgggggctgcagaga	16	10	3	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34080078	T	T	34080078	1	4	34	0	1	0	0	0	0	0	0	0	3979	928	32	4		4	CSMD2	1	34080078	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	2638726	34080078	215170543	5	45489											
MFSD2A	84879	broad.mit.edu	37	chr1	40424304	40424304	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagggagggagcctctgcttCtgcctaccagtgagagttga	14	9	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40424304	T	T	40424304	1	4	34	0	1	0	0	0	0	0	0	0	9623	928	32	4		4	MFSD2A	1	40424304	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	6344226	40424304	208826317	6	45490											
CTPS	1503	broad.mit.edu	37	chr1	41456778	41456778	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggttcaaggaaaagtcataCttgaaaattccttatcagag	8	6	3	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41456778	G	G	41456778	1	3	34	0	1	0	0	0	0	0	0	0	4056	580	20	4		4	CTPS	1	41456778	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1032474	41456778	207793843	7	45491											
CDC20	991	broad.mit.edu	37	chr1	43826219	43826219	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgaaatatgaccagtcactCtgcccgagtgggctccctaa	9	13	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43826219	T	T	43826219	3	4	34	1	0	0	0	0	1	0	0	0	3089	913	32	4	825	4	CDC20	1	43826219	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	2369441	43826219	205424402	8	45492											
PLK3	1263	broad.mit.edu	37	chr1	45267706	45267706	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgactgcctgatgtgtgcatGagataaatgggaagggatga	15	4	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45267706	C	C	45267706	1	2	34	0	1	0	0	0	0	0	0	0	12192	1305	45	4		4	PLK3	1	45267706	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	1441487	45267706	203982915	9	45493											
ZCCHC11	23318	broad.mit.edu	37	chr1	52903785	52903785	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttaccttaggtataatTaaataccctaaactttctca	2	9	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52903785	C	C	52903785	1	2	34	0	1	0	0	0	0	0	0	0	17706	1769	61	5		5	ZCCHC11	1	52903785	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	7636079	52903785	196346836	10	45494											
TMEM59	9528	broad.mit.edu	37	chr1	54497767	54497767	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgaaaccattttaaaagctCtatgaggagtggaattttag	9	4	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54497767	G	G	54497767	1	3	34	0	1	0	0	0	0	0	0	0	16308	928	32	4		4	TMEM59	1	54497767	3'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	1593982	54497767	194752854	11	45495											
EFCAB7	84455	broad.mit.edu	37	chr1	64017378	64017378	+	Intron	DEL	T	-	-													ttattttaaggtgtttgggcTtttttttttgtttgtaggaa							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64017378	-	-	64017378	6	5	34	0	1	1	0	1	0	0	0	0	4980	1624	56	0		0	EFCAB7	1	64017378	Intron	DEL	T	TCGA-05-5715-01A-01D-1625-08	9519611	64017378	185233243	12	45496											
AKNAD1	254268	broad.mit.edu	37	chr1	109358674	109358674	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacccatttcttatggtttCtgtgttttctctagaaagtc	6	8	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109358674	T	T	109358674	1	4	34	0	1	0	0	0	0	0	0	0	464	928	32	4		4	AKNAD1	1	109358674	3'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	45341296	109358674	139891947	13	45497			1	39		3	3	138	C		8.741417e-07
AKNAD1	254268	broad.mit.edu	37	chr1	109358772	109358772	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcatttttttcttttgaatCcttggtagcctagcgttgaa	8	7	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109358772	G	G	109358772	1	3	34	0	1	0	0	0	0	0	0	0	464	870	30	4		4	AKNAD1	1	109358772	3'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	98	109358772	139891849	14	45498			1	39		3	3	138	C		8.741417e-07
AKNAD1	254268	broad.mit.edu	37	chr1	109358811	109358811	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aactagtatttcagtcgattCctccacctctgtgctttagc	6	12	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109358811	G	G	109358811	3	3	34	1	0	0	0	0	1	0	0	0	464	854	30	4	21	4	AKNAD1	1	109358811	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	39	109358811	139891810	15	45499			1	39		3	3	138	C		8.741417e-07
PDE4DIP	9659	broad.mit.edu	37	chr1	144855783	144855783	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggtgcttggcagggccGctctccagaacatggtgagg	17	9	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144855783	A	A	144855783	3	1	34	1	0	0	0	0	1	0	0	0	11737	1087	38	4	286	4	PDE4DIP	1	144855783	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	35496972	144855783	104394838	16	45500											
PDE4DIP	9659	broad.mit.edu	37	chr1	144994592	144994592	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgggcccctgcactcaccCgcttgtagatgtcctcccgg	11	17	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144994592	T	T	144994592	3	4	34	1	0	0	0	0	1	0	0	0	11737	666	23	4	8219	4	PDE4DIP	1	144994592	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	138809	144994592	104256029	17	45501											
ARNT	405	broad.mit.edu	37	chr1	150789333	150789333	+	Frame_Shift_Del	DEL	G	-	-													agaatagctgttgggtggcaGggacagtgctggaggagatg							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150789333	-	-	150789333	7	5	34	1	0	1	0	1	0	0	0	0	969	1000	35	0	656	0	ARNT	1	150789333	Frame_Shift_Del	DEL	G	TCGA-05-5715-01A-01D-1625-08	5794741	150789333	98461288	18	45502											
FLG	2312	broad.mit.edu	37	chr1	152285020	152285020	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagacctttcccctgaccggTcacgtgcggactcttggtgg	13	13	2	2	rs138055273	byFrequency	TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152285020	C	C	152285020	3	2	34	1	0	0	0	0	1	0	0	0	5979	1667	58	5	9847	5	FLG	1	152285020	Missense_Mutation	SNP	T	TCGA-05-5715-01A-01D-1625-08	1495687	152285020	96965601	19	45503											
SLC39A1	27173	broad.mit.edu	37	chr1	153933326	153933326	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagacctagggtctgacacaGacacagggctactctcagtc	10	13	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153933326	A	A	153933326	1	1	34	0	1	0	0	0	0	0	0	0	14726	957	33	4		4	SLC39A1	1	153933326	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	1648306	153933326	95317295	20	45504											
NUP210L	91181	broad.mit.edu	37	chr1	154125455	154125455	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacatactaccaggtatatGtaaatgacactttttaaaga	5	6	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154125455	A	A	154125455	1	1	34	0	1	0	0	0	0	0	0	0	10856	1392	48	4		4	NUP210L	1	154125455	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	192129	154125455	95125166	21	45505											
CHRNB2	1141	broad.mit.edu	37	chr1	154543728	154543728	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctcctatgatggcagcatCttctggctgccgcctgccat	10	14	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154543728	T	T	154543728	2	4	34	1	0	0	0	0	0	0	0	1	3422	903	32	4		4	CHRNB2	1	154543728	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	418273	154543728	94706893	22	45506											
RUSC1	23623	broad.mit.edu	37	chr1	155294809	155294809	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cggccctgctctcaggctgtCcgaaggcagtctctccacgc	11	17	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155294809	G	G	155294809	1	3	34	0	1	0	0	0	0	0	0	0	13861	870	30	4		4	RUSC1	1	155294809	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	751081	155294809	93955812	23	45507											
ARHGEF2	9181	broad.mit.edu	37	chr1	155920411	155920411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagatccaccaccaactGgcctctttcagcaccacgac	7	17	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155920411	T	T	155920411	1	4	34	0	1	0	0	0	0	0	0	0	905	1363	47	2		2	ARHGEF2	1	155920411	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	625602	155920411	93330210	24	45508											
NCSTN	23385	broad.mit.edu	37	chr1	160322033	160322033	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggggtgcaatggcagggaaGaaagaggatagtaaagatga	17	2	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160322033	C	C	160322033	1	2	34	0	1	0	0	0	0	0	0	0	10336	957	33	4		4	NCSTN	1	160322033	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	4401622	160322033	88928588	25	45509											
FCGR3A	2214	broad.mit.edu	37	chr1	161518128	161518128	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttttatctctaagaatatCatctctggctcttaccaagt	5	10	4	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161518128	T	T	161518128	1	4	34	0	1	0	0	0	0	0	0	0	5841	841	29	4		4	FCGR3A	1	161518128	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1196095	161518128	87732493	26	45510											
KIFAP3	22920	broad.mit.edu	37	chr1	170003513	170003513	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgccactctaaaaggatatCagctttcttcttctttgaga	6	9	5	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170003513	G	G	170003513	3	3	34	1	0	0	0	0	1	0	0	0	8381	840	29	4	1692	4	KIFAP3	1	170003513	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	8485385	170003513	79247108	27	45511											
METTL13	51603	broad.mit.edu	37	chr1	171761065	171761065	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatcccctgaatggagacaGtgagctgactttcccttttg	10	10	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171761065	A	A	171761065	1	1	34	0	1	0	0	0	0	0	0	0	9590	1044	36	4		4	METTL13	1	171761065	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	1757552	171761065	77489556	28	45512											
ASTN1	460	broad.mit.edu	37	chr1	177133601	177133601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctcccgggaagtcgttgCgcaccgagaagaggagcttg	14	10	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177133601	A	A	177133601	3	1	34	1	0	0	0	0	1	0	0	0	1068	768	27	3	3768	3	ASTN1	1	177133601	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	5372536	177133601	72117020	29	45513											
QSOX1	5768	broad.mit.edu	37	chr1	180166487	180166487	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttatttgaagtcctgcctCattctcactggagcctcagt	8	12	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180166487	T	T	180166487	1	4	34	0	1	0	0	0	0	0	0	0	12991	841	29	4		4	QSOX1	1	180166487	3'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	3032886	180166487	69084134	30	45514											
ZNF648	127665	broad.mit.edu	37	chr1	182026921	182026921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatttctcttcctctttGcccagtggatggggccatgg	12	10	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182026921	T	T	182026921	2	4	34	1	0	0	0	0	0	0	0	1	18190	1306	46	3		3	ZNF648	1	182026921	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	1860434	182026921	67223700	31	45515											
RNASEL	6041	broad.mit.edu	37	chr1	182555637	182555637	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcagcttcacgctccccGcaatcgctgcgaggataaaa	9	14	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182555637	A	A	182555637	3	1	34	1	0	0	0	0	1	0	0	0	13527	1087	38	4	1944	4	RNASEL	1	182555637	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	528716	182555637	66694984	32	45516											
RGS16	6004	broad.mit.edu	37	chr1	182571203	182571203	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaactcctcacaggccagCcagaactccaggttctcctc	7	16	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182571203	T	T	182571203	4	4	34	1	0	0	0	0	0	1	0	0	13407	740	26	4	331	4	RGS16	1	182571203	Nonsense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	15566	182571203	66679418	33	45517											
HMCN1	83872	broad.mit.edu	37	chr1	186023068	186023068	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcactctattcatgtgtggCgtcgaatgttgctgggactg	13	8	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186023068	T	T	186023068	3	4	34	1	0	0	0	0	1	0	0	0	7287	768	27	4	6986	4	HMCN1	1	186023068	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	3451865	186023068	63227553	34	45518											
F13B	2165	broad.mit.edu	37	chr1	197036345	197036345	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgataaaagtcaggtttttCaacctcatcttcagtggtgt	8	7	5	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197036345	T	T	197036345	2	4	34	1	0	0	0	0	0	0	0	1	5384	825	29	4		4	F13B	1	197036345	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	11013277	197036345	52214276	35	45519											
CRB1	23418	broad.mit.edu	37	chr1	197411420	197411420	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggcgagcgctgcgaggtgGacgtaagcagcctctccttt	14	12	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197411420	A	A	197411420	3	1	34	1	0	0	0	0	1	0	0	0	3880	1174	41	4	4045	4	CRB1	1	197411420	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	375075	197411420	51839201	36	45520											
DENND1B	163486	broad.mit.edu	37	chr1	197552179	197552179	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaatttcctgacattctaGaaaagatgctactcagggtt	7	7	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197552179	C	C	197552179	1	2	34	0	1	0	0	0	0	0	0	0	4467	957	33	4		4	DENND1B	1	197552179	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	140759	197552179	51698442	37	45521											
PTPRC	5788	broad.mit.edu	37	chr1	198668890	198668890	+	Intron	DEL	T	-	-													gtacatgacgactacctgtaTttaagaatggtgtgaggaaa							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	198668890	-	-	198668890	6	5	34	0	1	1	0	1	0	0	0	0	12905	1508	52	0		0	PTPRC	1	198668890	Intron	DEL	T	TCGA-05-5715-01A-01D-1625-08	1116711	198668890	50581731	38	45522											
LMOD1	25802	broad.mit.edu	37	chr1	201868453	201868453	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggcagggaggactttgtctCccatcttcctctgggtagct	13	11	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201868453	G	G	201868453	3	3	34	1	0	0	0	0	1	0	0	0	8930	855	30	4	122	4	LMOD1	1	201868453	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	3199563	201868453	47382168	39	45523											
PLEKHA6	22874	broad.mit.edu	37	chr1	204216609	204216609	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctacgggggaaagaggcgttCactgagaaagccgccatcac	13	11	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204216609	T	T	204216609	1	4	34	0	1	0	0	0	0	0	0	0	12155	841	29	4		4	PLEKHA6	1	204216609	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	2348156	204216609	45034012	40	45524											
CD46	4179	broad.mit.edu	37	chr1	207956598	207956598	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatatttaattctttccttCttttattaatttaatctata	0	5	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207956598	T	T	207956598	1	4	34	0	1	0	0	0	0	0	0	0	3048	928	32	4		4	CD46	1	207956598	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	3739989	207956598	41294023	41	45525											
ATF3	467	broad.mit.edu	37	chr1	212792564	212792564	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccagtgctgctctcccatCtcccatcttcctctcgcagc	5	20	4	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212792564	T	T	212792564	1	4	34	0	1	0	0	0	0	0	0	0	1085	928	32	4		4	ATF3	1	212792564	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	4835966	212792564	36458057	42	45526											
CENPF	1063	broad.mit.edu	37	chr1	214788288	214788288	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttctcatgaacttcaagtCaaggagtcacaagtgaattt	7	7	4	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214788288	G	G	214788288	2	3	34	1	0	0	0	0	0	0	0	1	3261	813	29	4		4	CENPF	1	214788288	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	1995724	214788288	34462333	43	45527											
HHIPL2	79802	broad.mit.edu	37	chr1	222716812	222716812	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgaagttcccctctattatCtcgcagacctggttggcatt	9	11	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222716812	G	G	222716812	1	3	34	0	1	0	0	0	0	0	0	0	7161	928	32	4		4	HHIPL2	1	222716812	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	7928524	222716812	26533809	44	45528											
OPN3	23596	broad.mit.edu	37	chr1	241767856	241767856	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacgttcataggccagcacGgttagggtggcaatggaaac	13	8	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241767856	A	A	241767856	2	1	34	1	0	0	0	0	0	0	0	1	10975	1103	39	4		4	OPN3	1	241767856	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	19051044	241767856	7482765	45	45529											
ITSN2	50618	broad.mit.edu	37	chr2	24557599	24557599	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctaaggcttgagtgcgttGagcccaactgcagatctaag	12	9	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24557599	A	A	24557599	1	1	34	0	1	0	0	0	0	0	0	0	7997	1305	45	4		4	ITSN2	2	24557599	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08		24557599	218641774	46	45530											
C2orf63	130162	broad.mit.edu	37	chr2	55439826	55439826	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacctggaataggttttgaaGgatctttggagaaagtacaa	11	4	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55439826	C	C	55439826	3	2	34	1	0	0	0	0	1	0	0	0	2204	1000	35	4	1314	4	C2orf63	2	55439826	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	30882227	55439826	187759547	47	45531											
OTX1	5013	broad.mit.edu	37	chr2	63280140	63280140	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttagcatgatgtcttacctCaaacaacccccatacggcat	6	13	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63280140	T	T	63280140	2	4	34	1	0	0	0	0	0	0	0	1	11414	813	29	4		4	OTX1	2	63280140	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	7840314	63280140	179919233	48	45532											
CLEC4F	165530	broad.mit.edu	37	chr2	71046608	71046608	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttttccaggtcagcaaaTccccagccctgagcctggga	9	14	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71046608	C	C	71046608	1	2	34	0	1	0	0	0	0	0	0	0	3548	1450	50	5		5	CLEC4F	2	71046608	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	7766468	71046608	172152765	49	45533											
DYSF	8291	broad.mit.edu	37	chr2	71901354	71901354	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctggaggctggacaagactGagagcaaaatcccagcacga	12	10	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71901354	A	A	71901354	3	1	34	1	0	0	0	0	1	0	0	0	4899	1291	45	4	6156	4	DYSF	2	71901354	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	854746	71901354	171298019	50	45534											
ALMS1	7840	broad.mit.edu	37	chr2	73830545	73830545	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcaagtttaaacattatgAgaaagttgtgagagtcattt	8	4	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73830545	T	T	73830545	1	4	34	0	1	0	0	0	0	0	0	0	535	319	11	5		5	ALMS1	2	73830545	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	1929191	73830545	169368828	51	45535											
CTNNA2	1496	broad.mit.edu	37	chr2	80101245	80101245	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatgagatggcagccgcccGaggggctctgaagaagaatg	17	8	1	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80101245	A	A	80101245	3	1	34	1	0	0	0	0	1	0	0	0	4047	1058	37	4	647	4	CTNNA2	2	80101245	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	6270700	80101245	163098128	52	45536											
GPR45	11250	broad.mit.edu	37	chr2	105859054	105859054	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcaccagggcgggcctgCggcgcctgcagcggcagcaa	16	15	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105859054	T	T	105859054	3	4	34	1	0	0	0	0	1	0	0	0	6761	759	27	4	741	4	GPR45	2	105859054	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	25757809	105859054	137340319	53	45537											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105913056	105913056	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaaactggatcattacctGatttgttcaacaacttcacc	4	13	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105913056	C	C	105913056	1	2	34	0	1	0	0	0	0	0	0	0	15947	1305	45	4		4	TGFBRAP1	2	105913056	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	54002	105913056	137286317	54	45538											
PTPN4	5775	broad.mit.edu	37	chr2	120643515	120643515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctccgttactcaatataAcattttttaagattagataa	5	6	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120643515	T	T	120643515	1	4	34	0	1	0	0	0	0	0	0	0	12898	58	2	5		5	PTPN4	2	120643515	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	14730459	120643515	122555858	55	45539											
YSK4	80122	broad.mit.edu	37	chr2	135741406	135741406	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactatgcctctggaagaatGagacaaaaggaaagatgacc	10	7	1	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135741406	A	A	135741406	1	1	34	0	1	0	0	0	0	0	0	0	17622	1305	45	4		4	YSK4	2	135741406	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	15097891	135741406	107457967	56	45540											
LRP1B	53353	broad.mit.edu	37	chr2	141441260	141441260	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcagaatgggtgccttcactCcgggctggactgtcattaga	12	10	3	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141441260	G	G	141441260	1	3	34	0	1	0	0	0	0	0	0	0	9042	870	30	4		4	LRP1B	2	141441260	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	5699854	141441260	101758113	57	45541											
ZEB2	9839	broad.mit.edu	37	chr2	145161555	145161555	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggcaaacgtgtagctacaGagagggcaggaaaagttctc	13	7	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145161555	C	C	145161555	2	2	34	1	0	0	0	0	0	0	0	1	17750	929	33	4		4	ZEB2	2	145161555	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	3720295	145161555	98037818	58	45542											
IFIH1	64135	broad.mit.edu	37	chr2	163134108	163134108	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaagatgagtatacgcatCtatcattcgaattgtgtcat	7	7	4	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163134108	G	G	163134108	3	3	34	1	0	0	0	0	1	0	0	0	7590	913	32	4	1244	4	IFIH1	2	163134108	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	17972553	163134108	80065265	59	45543											
COBLL1	22837	broad.mit.edu	37	chr2	165584560	165584560	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcaagaggctcctgcgattGataatctttcaacaatagtg	9	8	3	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165584560	A	A	165584560	4	1	34	1	0	0	0	0	0	1	0	0	3686	1299	45	4	2964	4	COBLL1	2	165584560	Nonsense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	2450452	165584560	77614813	60	45544											
LASS6	253782	broad.mit.edu	37	chr2	169571507	169571507	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggatgtttcttctttcctCaaggactttggcattatgtt	8	7	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169571507	T	T	169571507	1	4	34	0	1	0	0	0	0	0	0	0	8715	841	29	4		4	LASS6	2	169571507	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	3986947	169571507	73627866	61	45545											
DCAF17	80067	broad.mit.edu	37	chr2	172333470	172333470	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaccataaagtaagtcaaGagtactttaaaatcctttat	5	6	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172333470	A	A	172333470	1	1	34	0	1	0	0	0	0	0	0	0	4302	957	33	4		4	DCAF17	2	172333470	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	2761963	172333470	70865903	62	45546											
SESTD1	91404	broad.mit.edu	37	chr2	180014079	180014079	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgttaatcaaagcaagttCatctaataatgatgtagatt	6	4	3	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180014079	T	T	180014079	3	4	34	1	0	0	0	0	1	0	0	0	14240	835	29	4	1612	4	SESTD1	2	180014079	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	7680609	180014079	63185294	63	45547											
DNAH7	56171	broad.mit.edu	37	chr2	196911987	196911987	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcctttgaggcacccttaGagatgcacagaattctaata	8	9	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196911987	C	C	196911987	1	2	34	0	1	0	0	0	0	0	0	0	4646	957	33	4		4	DNAH7	2	196911987	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	16897908	196911987	46287386	64	45548											
NRP2	8828	broad.mit.edu	37	chr2	206617758	206617758	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagcttgttccacatacttCaaccccagattcccttacaa	3	16	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206617758	T	T	206617758	1	4	34	0	1	0	0	0	0	0	0	0	10756	841	29	4		4	NRP2	2	206617758	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	9705771	206617758	36581615	65	45549											
XRCC5	7520	broad.mit.edu	37	chr2	217012854	217012854	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagcctctacccccaattCagcagcatatttggaatatg	9	11	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217012854	T	T	217012854	4	4	34	1	0	0	0	0	0	1	0	0	17583	827	29	4	1579	4	XRCC5	2	217012854	Nonsense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	10395096	217012854	26186519	66	45550											
SP140	11262	broad.mit.edu	37	chr2	231135347	231135347	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actttgggaaaacccaagagGaaaagaagtaagaataaata	9	4	0	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231135347	A	A	231135347	2	1	34	1	0	0	0	0	0	0	0	1	15076	1165	41	4		4	SP140	2	231135347	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	14122493	231135347	12064026	67	45551											
GALNTL2	117248	broad.mit.edu	37	chr3	16254293	16254293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagagagccaagtggggCttctgtgtccagcacagggc	16	9	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16254293	A	A	16254293	1	1	34	0	1	0	0	0	0	0	0	0	6284	812	28	3		3	GALNTL2	3	16254293	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08		16254293	181768137	68	45552											
EFHB	151651	broad.mit.edu	37	chr3	19940970	19940970	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaaacttttctttgaaatCatctgctcttttggatacaa	5	7	4	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19940970	A	A	19940970	3	1	34	1	0	0	0	0	1	0	0	0	4985	826	29	3	1073	3	EFHB	3	19940970	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	3686677	19940970	178081460	69	45553											
RPL15	6138	broad.mit.edu	37	chr3	23959312	23959312	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttattgtacttaaagcggatGatatttaatacacagtttga	7	4	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23959312	C	C	23959312	1	2	34	0	1	0	0	0	0	0	0	0	13673	1305	45	4		4	RPL15	3	23959312	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	4018342	23959312	174063118	70	45554											
RARB	5915	broad.mit.edu	37	chr3	25622028	25622028	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatctgatgacattttctctCtctcctagaattccagtgct	5	11	3	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25622028	A	A	25622028	1	1	34	0	1	0	0	0	0	0	0	0	13161	928	32	3		3	RARB	3	25622028	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1662716	25622028	172400402	71	45555											
OSBPL10	114884	broad.mit.edu	37	chr3	31836441	31836441	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgtcatttgtaaacagCtgtaaagtccatgtgtcaca	9	7	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31836441	T	T	31836441	1	4	34	0	1	0	0	0	0	0	0	0	11369	812	28	4		4	OSBPL10	3	31836441	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	6214413	31836441	166185989	72	45556											
SCN11A	11280	broad.mit.edu	37	chr3	38938482	38938482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggaaggagtgccagaaatCccccatgtgccagtgccgta	12	11	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38938482	A	A	38938482	3	1	34	1	0	0	0	0	1	0	0	0	14026	855	30	3	3170	3	SCN11A	3	38938482	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	7102041	38938482	159083948	73	45557											
TTC21A	199223	broad.mit.edu	37	chr3	39159580	39159580	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcctagaaaaagatgagaGcaatattgatgcctgccaaa	8	7	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39159580	A	A	39159580	3	1	34	1	0	0	0	0	1	0	0	0	16813	971	34	4	763	4	TTC21A	3	39159580	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	221098	39159580	158862850	74	45558											
CX3CR1	1524	broad.mit.edu	37	chr3	39307728	39307728	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaggcccttttcatttatCaaatagtgagtccagaaggg	11	7	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39307728	T	T	39307728	2	4	34	1	0	0	0	0	0	0	0	1	4108	825	29	4		4	CX3CR1	3	39307728	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	148148	39307728	158714702	75	45559											
CTNNB1	1499	broad.mit.edu	37	chr3	41278227	41278227	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatgtgagcagttatttatCtggtagtttcctagagcagg	11	5	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41278227	G	G	41278227	1	3	34	0	1	0	0	0	0	0	0	0	4050	928	32	4		4	CTNNB1	3	41278227	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1970499	41278227	156744203	76	45560											
NFKBIZ	64332	broad.mit.edu	37	chr3	101571949	101571950	+	Frame_Shift_Ins	INS	-	C	C													tccagacaccacctcaaacaINSccaacgcccggggagagcat							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101571950	C	C	101571949	7	5	34	1	0	1	1	0	0	0	0	0	10478	146	6	0	597	0	NFKBIZ	3	101571949	Frame_Shift_Ins	INS	-	TCGA-05-5715-01A-01D-1625-08	60293722	101571949	96450481	77	45561											
MORC1	27136	broad.mit.edu	37	chr3	108688496	108688496	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatttagaatataaatggtGatactgaaaggaagcttacc	8	5	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108688496	A	A	108688496	1	1	34	0	1	0	0	0	0	0	0	0	9795	1305	45	4		4	MORC1	3	108688496	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	7116547	108688496	89333934	78	45562											
EAF2	55840	broad.mit.edu	37	chr3	121591540	121591540	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatacagggaattgtgtctCaggacatcctaccatgacac	9	10	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121591540	A	A	121591540	4	1	34	1	0	0	0	0	0	1	0	0	4916	838	29	3	659	3	EAF2	3	121591540	Nonsense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	12903044	121591540	76430890	79	45563											
SLC7A14	57709	broad.mit.edu	37	chr3	170216672	170216672	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtatgattcttcacctttCcctagagaggaaagacatga	10	8	2	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170216672	A	A	170216672	2	1	34	1	0	0	0	0	0	0	0	1	14810	869	30	3		3	SLC7A14	3	170216672	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	48625132	170216672	27805758	80	45564											
ATP13A4	84239	broad.mit.edu	37	chr3	193210833	193210833	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatttagcaataatatttttGagataacatttttcttcttt	3	4	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193210833	C	C	193210833	1	2	34	0	1	0	0	0	0	0	0	0	1130	1305	45	4		4	ATP13A4	3	193210833	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	22994161	193210833	4811597	81	45565											
RNF168	165918	broad.mit.edu	37	chr3	196199040	196199040	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catttgctctttatccacctCcttctgaagttgtaatgcca	5	12	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196199040	G	G	196199040	3	3	34	1	0	0	0	0	1	0	0	0	13570	864	30	4	353	4	RNF168	3	196199040	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	2988207	196199040	1823390	82	45566											
CRIPAK	285464	broad.mit.edu	37	chr4	1389587	1389587	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatggtggctttttaataCgtttttatgtcaaggatccc	8	8	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1389587	T	T	1389587	3	4	34	1	0	0	0	0	1	0	0	0	3909	536	19	4	1290	4	CRIPAK	4	1389587	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08		1389587	189764689	83	45567											
HTT	3064	broad.mit.edu	37	chr4	3156082	3156082	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccgacgaaaggggaaggaGaaagaaccaggagaacaagc	14	7	0	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3156082	A	A	3156082	2	1	34	1	0	0	0	0	0	0	0	1	7527	933	33	4		4	HTT	4	3156082	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	1766495	3156082	187998194	84	45568											
MAN2B2	23324	broad.mit.edu	37	chr4	6580191	6580191	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcatgcatgacgaggctgtGacgcaccttgatgaccagat	12	10	1	5			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6580191	C	C	6580191	2	2	34	1	0	0	0	0	0	0	0	1	9309	1277	45	4		4	MAN2B2	4	6580191	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	3424109	6580191	184574085	85	45569											
TBC1D19	55296	broad.mit.edu	37	chr4	26675489	26675489	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaattgtgggctctcattttGaatatttccagccaacctga	8	9	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26675489	C	C	26675489	3	2	34	1	0	0	0	0	1	0	0	0	15726	1281	45	4	837	4	TBC1D19	4	26675489	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	20095298	26675489	164478787	86	45570											
RASL11B	65997	broad.mit.edu	37	chr4	53728649	53728649	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagtccctcagtcccttcCcgcgcggtgcgccgcagccg	11	20	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53728649	G	G	53728649	1	3	34	0	1	0	0	0	0	0	0	0	13190	638	22	4		4	RASL11B	4	53728649	5'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	27053160	53728649	137425627	87	45571											
PDGFRA	5156	broad.mit.edu	37	chr4	54880300	54880300	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcgtgtctggaagacaaatGagaaaaaagtttactcttga	9	5	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54880300	C	C	54880300	1	2	34	0	1	0	0	0	0	0	0	0	11755	1305	45	4		4	PDGFRA	4	54880300	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	1151651	54880300	136273976	88	45572											
LPHN3	23284	broad.mit.edu	37	chr4	62935742	62935742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttatacatatttcatagtcAatgaatgtttttgcttctgt	5	5	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62935742	T	T	62935742	1	4	34	0	1	0	0	0	0	0	0	0	9004	145	5	5		5	LPHN3	4	62935742	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	8055442	62935742	128218534	89	45573											
HSD17B11	51170	broad.mit.edu	37	chr4	88295807	88295807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccccactttaatctttGggattttcaaaaggaacatt	6	8	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88295807	T	T	88295807	1	4	34	0	1	0	0	0	0	0	0	0	7447	1363	47	2		2	HSD17B11	4	88295807	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	25360065	88295807	102858469	90	45574											
FAM13A	10144	broad.mit.edu	37	chr4	89669035	89669035	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgggggtaaagatatatGagatttatttatttatttat	8	0	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89669035	A	A	89669035	1	1	34	0	1	0	0	0	0	0	0	0	5498	1305	45	4		4	FAM13A	4	89669035	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	1373228	89669035	101485241	91	45575											
COL25A1	84570	broad.mit.edu	37	chr4	109784503	109784503	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgggggctccaggttcccctCgctcacctcttccaggaggc	12	17	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109784503	T	T	109784503	3	4	34	1	0	0	0	0	1	0	0	0	3716	884	31	4	996	4	COL25A1	4	109784503	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	20115468	109784503	81369773	92	45576											
HMGB2	3148	broad.mit.edu	37	chr4	174253151	174253151	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgaagctagtattgagctGcacttgaattcacattctta	7	8	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174253151	A	A	174253151	1	1	34	0	1	0	0	0	0	0	0	0	7293	1334	46	4		4	HMGB2	4	174253151	3'UTR	SNP	G	TCGA-05-5715-01A-01D-1625-08	64468648	174253151	16901125	93	45577											
SNX25	83891	broad.mit.edu	37	chr4	186168347	186168347	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttattcgttaagccttatCttaatgcttgtttagatggc	8	6	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186168347	G	G	186168347	1	3	34	0	1	0	0	0	0	0	0	0	15010	928	32	4		4	SNX25	4	186168347	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	11915196	186168347	4985929	94	45578											
FRG1	2483	broad.mit.edu	37	chr4	190864558	190864558	+	Intron	SNP	T	G	G													tgcttaaatattacctacagTtataaattccatttattctt							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190864558	G	G	190864558	1	3	34	0	1	0	0	0	0	0	0	0	6106	1740	60	5		5	FRG1	4	190864558	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	4696211	190864558	289718	95	45579	227	2									
FRG1	2483	broad.mit.edu	37	chr4	190864560	190864560	+	Intron	SNP	A	G	G													cttaaatattacctacagttAtaaattccatttattcttta					rs77715129		TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190864560	G	G	190864560	1	3	34	0	1	0	0	0	0	0	0	0	6106	464	16	5		5	FRG1	4	190864560	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	2	190864560	289716	96	45580	227	2									
SLC6A3	6531	broad.mit.edu	37	chr5	1394836	1394836	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggatgacttcctggggtcttCgtctctgctccctctacacc	9	15	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1394836	T	T	1394836	1	4	34	0	1	0	0	0	0	0	0	0	14799	899	31	4		4	SLC6A3	5	1394836	3'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08		1394836	179520424	97	45581											
C7	730	broad.mit.edu	37	chr5	40979811	40979811	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcttgtaaataatgtcatTaaaaattcttttcagacctt	3	6	4	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40979811	A	A	40979811	1	1	34	0	1	0	0	0	0	0	0	0	2400	1769	61	5		5	C7	5	40979811	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	39584975	40979811	139935449	98	45582											
MARVELD2	153562	broad.mit.edu	37	chr5	68720468	68720468	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcgaaaaggaaaatggtaaGaataaagtttacttcatatt	7	3	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68720468	C	C	68720468	1	2	34	0	1	0	0	0	0	0	0	0	9410	957	33	4		4	MARVELD2	5	68720468	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	27740657	68720468	112194792	99	45583											
PCSK1	5122	broad.mit.edu	37	chr5	95764808	95764808	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacagataaacaatcttggtCacaataaaaaaaaaaccaca	3	8	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95764808	T	T	95764808	1	4	34	0	1	0	0	0	0	0	0	0	11694	841	29	4		4	PCSK1	5	95764808	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	27044340	95764808	85150452	100	45584											
TCF7	6932	broad.mit.edu	37	chr5	133480439	133480439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctgctctgccccgctgCctgctcgccctctgccctgc	10	22	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133480439	A	A	133480439	1	1	34	0	1	0	0	0	0	0	0	0	15818	754	26	3		3	TCF7	5	133480439	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	37715631	133480439	47434821	101	45585											
PKD2L2	27039	broad.mit.edu	37	chr5	137235437	137235437	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtattatcaggtgagtgactCaaaactttttttcatagaca	7	6	3	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137235437	T	T	137235437	1	4	34	0	1	0	0	0	0	0	0	0	12063	841	29	4		4	PKD2L2	5	137235437	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	3754998	137235437	43679823	102	45586											
KIF20A	10112	broad.mit.edu	37	chr5	137520899	137520899	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agattcaggtgagttgccctGagccagctccaattagctgc	11	11	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137520899	C	C	137520899	1	2	34	0	1	0	0	0	0	0	0	0	8356	1305	45	4		4	KIF20A	5	137520899	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	285462	137520899	43394361	103	45587											
COL23A1	91522	broad.mit.edu	37	chr5	177715114	177715114	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgccacccagacacctgctCgaggtgctctgccttgcctc	10	17	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177715114	T	T	177715114	1	4	34	0	1	0	0	0	0	0	0	0	3714	899	31	4		4	COL23A1	5	177715114	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	40194215	177715114	3200146	104	45588											
DSP	1832	broad.mit.edu	37	chr6	7581355	7581355	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacgtgctggatggccacctGagggaaaagcagaggaccca	15	10	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7581355	A	A	7581355	2	1	34	1	0	0	0	0	0	0	0	1	4821	1277	45	4		4	DSP	6	7581355	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08		7581355	163533712	105	45589											
HIST1H2BC	8347	broad.mit.edu	37	chr6	26123793	26123793	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtgacggccttggtgccctCcgacacggcgtgcttggcca	15	14	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26123793	G	G	26123793	3	3	34	1	0	0	0	0	1	0	0	0	7209	864	30	4	44	4	HIST1H2BC	6	26123793	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	18542438	26123793	144991274	106	45590											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33095818	33095818	+	Intron	SNP	A	G	G													tgaccccccagcagggaaacAtctacacctgccaagtggag							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33095818	G	G	33095818	1	3	34	0	1	0	0	0	0	0	0	0	7270	232	8	5		5	HLA-DPB1	6	33095818	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	6972025	33095818	138019249	107	45591	228	2									
HLA-DPB1	3115	broad.mit.edu	37	chr6	33095825	33095825	+	Intron	SNP	C	T	T													ccagcagggaaacatctacaCctgccaagtggagcacccca							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33095825	T	T	33095825	1	4	34	0	1	0	0	0	0	0	0	0	7270	522	18	4		4	HLA-DPB1	6	33095825	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	7	33095825	138019242	108	45592	228	2									
TREML1	340205	broad.mit.edu	37	chr6	41118012	41118012	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttaccatgcctgaaactCtgctgctcaggaatcggcca	8	14	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41118012	G	G	41118012	3	3	34	1	0	0	0	0	1	0	0	0	16596	913	32	4	333	4	TREML1	6	41118012	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	8022187	41118012	129997055	109	45593											
TREML1	340205	broad.mit.edu	37	chr6	41118143	41118143	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagaagcctctgaaacctCttcactactgcagactcacc	5	15	5	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41118143	G	G	41118143	1	3	34	0	1	0	0	0	0	0	0	0	16596	928	32	4		4	TREML1	6	41118143	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	131	41118143	129996924	110	45594											
LMBRD1	55788	broad.mit.edu	37	chr6	70415833	70415833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaagttgccagtgttaCtttaattggactgcctttgt	8	7	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70415833	A	A	70415833	1	1	34	0	1	0	0	0	0	0	0	0	8916	580	20	3		3	LMBRD1	6	70415833	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	29297690	70415833	100699234	111	45595											
LCA5	167691	broad.mit.edu	37	chr6	80198599	80198599	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctaaatagcaaatgacttaGagtgttcaatttttttcttt	5	6	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80198599	C	C	80198599	1	2	34	0	1	0	0	0	0	0	0	0	8728	957	33	4		4	LCA5	6	80198599	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	9782766	80198599	90916468	112	45596											
HACE1	57531	broad.mit.edu	37	chr6	105198404	105198404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccttttacatacttaatgTtaatataattatttcttatt	1	5	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105198404	C	C	105198404	1	2	34	0	1	0	0	0	0	0	0	0	7006	1740	60	5		5	HACE1	6	105198404	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	24999805	105198404	65916663	113	45597											
GRM1	2911	broad.mit.edu	37	chr6	146351273	146351273	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcctgagggttgtcccttCtgacactttgcaggcaaggg	12	11	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146351273	G	G	146351273	3	3	34	1	0	0	0	0	1	0	0	0	6862	913	32	4	622	4	GRM1	6	146351273	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	41152869	146351273	24763794	114	45598											
PLEKHG1	57480	broad.mit.edu	37	chr6	151089832	151089832	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggggaccgaagaaagatCagccctttttggaaacatac	10	10	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151089832	T	T	151089832	3	4	34	1	0	0	0	0	1	0	0	0	12163	838	29	4	476	4	PLEKHG1	6	151089832	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	4738559	151089832	20025235	115	45599											
IGF2R	3482	broad.mit.edu	37	chr6	160494683	160494683	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaagcattttgacacctttCtactttttttgttgttgtta	6	6	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160494683	G	G	160494683	1	3	34	0	1	0	0	0	0	0	0	0	7646	928	32	4		4	IGF2R	6	160494683	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	9404851	160494683	10620384	116	45600											
SLC22A1	6580	broad.mit.edu	37	chr6	160557534	160557534	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctcccaggtggctctgctCatgacagcgtgagtgtggct	15	11	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160557534	A	A	160557534	1	1	34	0	1	0	0	0	0	0	0	0	14553	841	29	3		3	SLC22A1	6	160557534	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	62851	160557534	10557533	117	45601											
CYTH3	9265	broad.mit.edu	37	chr7	6210316	6210316	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagccagttcagagactcgGaggaaaatggctggccgggc	16	10	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6210316	C	C	6210316	1	2	34	0	1	0	0	0	0	0	0	0	4238	1189	41	4		4	CYTH3	7	6210316	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08		6210316	152928347	118	45602											
ABCB5	340273	broad.mit.edu	37	chr7	20668464	20668464	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagtccaaactaacacaagtGagtatacgattatttttctg	6	7	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20668464	C	C	20668464	1	2	34	0	1	0	0	0	0	0	0	0	44	1305	45	4		4	ABCB5	7	20668464	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	14458148	20668464	138470199	119	45603											
HOXA1	3198	broad.mit.edu	37	chr7	27134880	27134880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaccagcaggactgacCtgttttgggagggtttcttt	11	10	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27134880	A	A	27134880	3	1	34	1	0	0	0	0	1	0	0	0	7355	695	24	2	363	2	HOXA1	7	27134880	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	6466416	27134880	132003783	120	45604											
COBL	23242	broad.mit.edu	37	chr7	51096213	51096213	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactggctggacgttcttctCtgaggcttgagaaatgtgac	12	8	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51096213	G	G	51096213	3	3	34	1	0	0	0	0	1	0	0	0	3685	912	32	4	1221	4	COBL	7	51096213	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	23961333	51096213	108042450	121	45605											
COBL	23242	broad.mit.edu	37	chr7	51096593	51096593	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccaagttccccagctcgtCaatcttaatggctccggtgg	9	14	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51096593	T	T	51096593	3	4	34	1	0	0	0	0	1	0	0	0	3685	826	29	4	1601	4	COBL	7	51096593	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	380	51096593	108042070	122	45606											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73959046	73959046	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgcatggcttaggagatGatgaatgtggcttcccggca	14	8	0	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73959046	A	A	73959046	1	1	34	0	1	0	0	0	0	0	0	0	6933	1305	45	4		4	GTF2IRD1	7	73959046	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	22862453	73959046	85179617	123	45607											
HIP1	3092	broad.mit.edu	37	chr7	75203022	75203022	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaggctgggatcctccctCtggcctgaatctcatgtaag	10	13	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75203022	T	T	75203022	1	4	34	0	1	0	0	0	0	0	0	0	7181	928	32	4		4	HIP1	7	75203022	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1243976	75203022	83935641	124	45608											
POR	5447	broad.mit.edu	37	chr7	75609617	75609617	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttgaaccttgaacaggctCagtcatggccggggcgcggt	16	10	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75609617	T	T	75609617	1	4	34	0	1	0	0	0	0	0	0	0	12352	841	29	4		4	POR	7	75609617	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	406595	75609617	83529046	125	45609											
SAMD9L	219285	broad.mit.edu	37	chr7	92763767	92763767	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagaggtttatatgtctcGcttttcaggtctgatctgcc	9	9	5	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92763767	A	A	92763767	2	1	34	1	0	0	0	0	0	0	0	1	13938	1078	38	4		4	SAMD9L	7	92763767	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	17154150	92763767	66374896	126	45610											
SLC12A9	56996	broad.mit.edu	37	chr7	100457570	100457570	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtggcccccactggtgttGatcggaatctatgccacagc	11	13	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100457570	C	C	100457570	3	2	34	1	0	0	0	0	1	0	0	0	14503	1281	45	4	1067	4	SLC12A9	7	100457570	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	7693803	100457570	58681093	127	45611											
DNAJC2	27000	broad.mit.edu	37	chr7	102978310	102978310	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaaatgaagccaatatattCcatcccttgtgttctggtac	7	9	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102978310	G	G	102978310	1	3	34	0	1	0	0	0	0	0	0	0	4679	870	30	4		4	DNAJC2	7	102978310	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	2520740	102978310	56160353	128	45612											
SLC26A3	1811	broad.mit.edu	37	chr7	107427166	107427166	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgcagggaggattctgatGagggttacctgcaggctgaa	17	6	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107427166	A	A	107427166	1	1	34	0	1	0	0	0	0	0	0	0	14632	1305	45	4		4	SLC26A3	7	107427166	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	4448856	107427166	51711497	129	45613											
SLC26A3	1811	broad.mit.edu	37	chr7	107427402	107427402	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaatgtgagatgcaagtaaGagtcttgctttgaagaaaaa	11	3	1	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107427402	C	C	107427402	1	2	34	0	1	0	0	0	0	0	0	0	14632	957	33	4		4	SLC26A3	7	107427402	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	236	107427402	51711261	130	45614											
OR2F2	135948	broad.mit.edu	37	chr7	143633081	143633081	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtggttgccctgtgctaCggcacaacgattttcactta	10	11	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143633081	T	T	143633081	2	4	34	1	0	0	0	0	0	0	0	1	11091	547	19	4		4	OR2F2	7	143633081	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	36205679	143633081	15505582	131	45615											
SMARCD3	6604	broad.mit.edu	37	chr7	150936248	150936248	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgcgctgctggatctttaGaggaagtgagaacaggagca	14	8	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150936248	C	C	150936248	1	2	34	0	1	0	0	0	0	0	0	0	14893	957	33	4		4	SMARCD3	7	150936248	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	7303167	150936248	8202415	132	45616											
SMARCD3	6604	broad.mit.edu	37	chr7	150936327	150936327	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctactgacaccgcctgccctGaaagagcatctgggagcagg	12	13	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150936327	C	C	150936327	1	2	34	0	1	0	0	0	0	0	0	0	14893	1305	45	4		4	SMARCD3	7	150936327	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	79	150936327	8202336	133	45617											
TNKS	8658	broad.mit.edu	37	chr8	9537386	9537386	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcttctctatttaattctCtatttgctgcctactgcatt	4	10	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9537386	G	G	9537386	1	3	34	0	1	0	0	0	0	0	0	0	16442	928	32	4		4	TNKS	8	9537386	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08		9537386	136826636	134	45618											
NPM2	10361	broad.mit.edu	37	chr8	21890671	21890671	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggagtgcagctttctcccCcagttactttccagctccgg	9	14	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21890671	T	T	21890671	3	4	34	1	0	0	0	0	1	0	0	0	10683	623	22	4	315	4	NPM2	8	21890671	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	12353285	21890671	124473351	135	45619											
SFTPC	6440	broad.mit.edu	37	chr8	22019333	22019333	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagaggagagcatagcaccTgcagcaagatggatgtgggc	17	7	0	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22019333	A	A	22019333	1	1	34	0	1	0	0	0	0	0	0	0	14305	1595	55	5		5	SFTPC	8	22019333	5'UTR	SNP	T	TCGA-05-5715-01A-01D-1625-08	128662	22019333	124344689	136	45620											
KIF13B	23303	broad.mit.edu	37	chr8	29018159	29018159	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataactttttgctgttttctGagtaagcatggttccccaag	8	8	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29018159	C	C	29018159	1	2	34	0	1	0	0	0	0	0	0	0	8345	1305	45	4		4	KIF13B	8	29018159	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	6998826	29018159	117345863	137	45621											
POLB	5423	broad.mit.edu	37	chr8	42212827	42212827	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcctcccaaagtgctgggAttacaggtgtgagccaccac	12	13	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42212827	T	T	42212827	1	4	34	0	1	0	0	0	0	0	0	0	12284	348	12	5		5	POLB	8	42212827	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	13194668	42212827	104151195	138	45622											
HEY1	23462	broad.mit.edu	37	chr8	80679680	80679680	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccctggccgcaggctgcCgccagcctgcgacgcgcgga	15	17	0	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80679680	T	T	80679680	1	4	34	0	1	0	0	0	0	0	0	0	7145	667	23	4		4	HEY1	8	80679680	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	38466853	80679680	65684342	139	45623											
RALYL	138046	broad.mit.edu	37	chr8	85441893	85441893	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaaaacccaacaccacTgttgtttctacctcttcttt	2	14	4	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85441893	C	C	85441893	1	2	34	0	1	0	0	0	0	0	0	0	13128	1595	55	5		5	RALYL	8	85441893	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	4762213	85441893	60922129	140	45624											
CPNE3	8895	broad.mit.edu	37	chr8	87557202	87557202	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataatgctccgaaatgtttaGtaatcacataatccacaatt	4	8	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87557202	C	C	87557202	1	2	34	0	1	0	0	0	0	0	0	0	3845	1044	36	4		4	CPNE3	8	87557202	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	2115309	87557202	58806820	141	45625											
RAD54B	25788	broad.mit.edu	37	chr8	95406084	95406084	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcaattaatgcaaaaaattCttgcagatcattctgaattg	5	6	4	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95406084	G	G	95406084	3	3	34	1	0	0	0	0	1	0	0	0	13100	922	32	4	1355	4	RAD54B	8	95406084	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	7848882	95406084	50957938	142	45626											
CYP11B1	1584	broad.mit.edu	37	chr8	143958264	143958264	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaactggggctgtggccaacCaggcccagccgctctccaaa	12	15	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143958264	G	G	143958264	2	3	34	1	0	0	0	0	0	0	0	1	4178	581	21	4		4	CYP11B1	8	143958264	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	48552180	143958264	2405758	143	45627											
MPDZ	8777	broad.mit.edu	37	chr9	13126722	13126722	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaagctctttatgatgactCcactgagtgtatcttcttcg	7	9	3	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13126722	G	G	13126722	3	3	34	1	0	0	0	0	1	0	0	0	9816	855	30	4	1667	4	MPDZ	9	13126722	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08		13126722	128086709	144	45628											
ACO1	48	broad.mit.edu	37	chr9	32423609	32423609	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataacagaataatataacttCttacattcctactggcttaa	3	8	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32423609	T	T	32423609	1	4	34	0	1	0	0	0	0	0	0	0	146	928	32	4		4	ACO1	9	32423609	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	19296887	32423609	108789822	145	45629											
ACO1	48	broad.mit.edu	37	chr9	32431849	32431849	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagaaaatagaggtgaggtCccacactgccctccccgccc	9	16	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32431849	T	T	32431849	1	4	34	0	1	0	0	0	0	0	0	0	146	870	30	4		4	ACO1	9	32431849	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	8240	32431849	108781582	146	45630											
UBQLN1	29979	broad.mit.edu	37	chr9	86279969	86279970	+	Frame_Shift_Ins	INS	-	T	T													gatgaggcccggggcttccgINSttgctaatgtctgtaaaccc							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86279970	T	T	86279969	7	5	34	1	0	1	1	0	0	0	0	0	17022	1145	40	0	357	0	UBQLN1	9	86279969	Frame_Shift_Ins	INS	-	TCGA-05-5715-01A-01D-1625-08	53848120	86279969	54933462	147	45631											
ROR2	4920	broad.mit.edu	37	chr9	94493098	94493098	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctctggtcgccaccgtacaGaggcacaccccaacccaggt	9	17	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94493098	A	A	94493098	1	1	34	0	1	0	0	0	0	0	0	0	13638	957	33	4		4	ROR2	9	94493098	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	8213129	94493098	46720333	148	45632											
SEC16A	9919	broad.mit.edu	37	chr9	139359059	139359059	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaacaatcagcttgtcactGatgcttctgagcctagattt	8	9	3	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139359059	C	C	139359059	1	2	34	0	1	0	0	0	0	0	0	0	14099	1305	45	4		4	SEC16A	9	139359059	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	44865961	139359059	1854372	149	45633											
ITIH2	3698	broad.mit.edu	37	chr10	7759700	7759700	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggaggaagctgggctcCtatgagcacaggatctatct	13	8	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7759700	A	A	7759700	2	1	34	1	0	0	0	0	0	0	0	1	7974	668	24	2		2	ITIH2	10	7759700	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08		7759700	127775047	150	45634											
TAF3	83860	broad.mit.edu	37	chr10	7860740	7860740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgccaggcgctgggctGggactcggtgcagctcagcg	17	12	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7860740	T	T	7860740	3	4	34	1	0	0	0	0	1	0	0	0	15644	1357	47	2	70	2	TAF3	10	7860740	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	101040	7860740	127674007	151	45635											
FRMD4A	55691	broad.mit.edu	37	chr10	13838429	13838429	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctttccttggaatcactCtgccctcccagacttccctg	5	17	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13838429	G	G	13838429	1	3	34	0	1	0	0	0	0	0	0	0	6111	928	32	4		4	FRMD4A	10	13838429	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	5977689	13838429	121696318	152	45636											
DCLRE1C	64421	broad.mit.edu	37	chr10	14978651	14978651	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttatcattaggacctagctCaacaaagccctccttcacag	6	13	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14978651	G	G	14978651	1	3	34	0	1	0	0	0	0	0	0	0	4329	841	29	4		4	DCLRE1C	10	14978651	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1140222	14978651	120556096	153	45637											
WAPAL	23063	broad.mit.edu	37	chr10	88213132	88213132	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggaaaatggttactgattCttccttagaacactaataat	6	7	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88213132	G	G	88213132	1	3	34	0	1	0	0	0	0	0	0	0	17375	928	32	4		4	WAPAL	10	88213132	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	73234481	88213132	47321615	154	45638			2	40		3	3	336	C		5.242738e-06
WAPAL	23063	broad.mit.edu	37	chr10	88213363	88213363	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacaaaaataacttgttttCacatgcaatatacatctttc	2	8	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88213363	G	G	88213363	1	3	34	0	1	0	0	0	0	0	0	0	17375	841	29	4		4	WAPAL	10	88213363	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	231	88213363	47321384	155	45639			2	40		3	3	336	C		5.242738e-06
WAPAL	23063	broad.mit.edu	37	chr10	88213467	88213467	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatggccctcatgcagtcctCcactgctttgcctacatggt	9	14	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88213467	G	G	88213467	3	3	34	1	0	0	0	0	1	0	0	0	17375	864	30	4	821	4	WAPAL	10	88213467	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	104	88213467	47321280	156	45640			2	40		3	3	336	C		5.242738e-06
BMPR1A	657	broad.mit.edu	37	chr10	88677025	88677025	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaccactgaagaagccagCtggtttcgagaaacagaaat	9	8	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88677025	T	T	88677025	2	4	34	1	0	0	0	0	0	0	0	1	1475	796	28	4		4	BMPR1A	10	88677025	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	463558	88677025	46857722	157	45641											
NT5C2	22978	broad.mit.edu	37	chr10	104857816	104857816	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatctttaccacagtactttGagaaaatactgtattctgct	5	8	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104857816	C	C	104857816	1	2	34	0	1	0	0	0	0	0	0	0	10782	1305	45	4		4	NT5C2	10	104857816	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	16180791	104857816	30676931	158	45642											
ATE1	11101	broad.mit.edu	37	chr10	123670659	123670659	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatccattgtggaatccatGggctcatctacaaatcagaa	7	10	4	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123670659	A	A	123670659	2	1	34	1	0	0	0	0	0	0	0	1	1082	1335	47	4		4	ATE1	10	123670659	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	18812843	123670659	11864088	159	45643											
METTL10	399818	broad.mit.edu	37	chr10	126479004	126479004	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacagagctatttatgacaGaggtttaaacatcactagtg	8	6	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126479004	C	C	126479004	1	2	34	0	1	0	0	0	0	0	0	0	9587	957	33	4		4	METTL10	10	126479004	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	2808345	126479004	9055743	160	45644											
UBQLNL	143630	broad.mit.edu	37	chr11	5536678	5536678	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaccagagctattatagaTgactcgggttgcaggatgct	11	9	0	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5536678	G	G	5536678	3	3	34	1	0	0	0	0	1	0	0	0	17026	1464	51	5	437	5	UBQLNL	11	5536678	Missense_Mutation	SNP	T	TCGA-05-5715-01A-01D-1625-08		5536678	129469838	161	45645											
SBF2	81846	broad.mit.edu	37	chr11	9861153	9861153	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacctaaacgctgatagtctCtgaaacaagctttttccacc	5	12	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9861153	G	G	9861153	3	3	34	1	0	0	0	0	1	0	0	0	13971	913	32	4	2262	4	SBF2	11	9861153	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	4324475	9861153	125145363	162	45646											
PSMA1	5682	broad.mit.edu	37	chr11	14632424	14632424	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgcgtttttctcacatgctCctctaggttttgttttgtgg	9	8	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14632424	G	G	14632424	1	3	34	0	1	0	0	0	0	0	0	0	12772	870	30	4		4	PSMA1	11	14632424	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	4771271	14632424	120374092	163	45647											
SLC5A12	159963	broad.mit.edu	37	chr11	26725075	26725076	+	Splice_Site	INS	-	A	A													tttttcttgactgagaacttINSacagcttagcatgcttttct							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26725076	A	A	26725075	8	5	34	1	0	1	1	0	0	0	1	0	14778	1769	61	0		0	SLC5A12	11	26725075	Splice_Site	INS	-	TCGA-05-5715-01A-01D-1625-08	12092651	26725075	108281441	164	45648											
BDNF	627	broad.mit.edu	37	chr11	27713962	27713962	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagtgggacaatcacggctCactgcagccccaacctcctg	10	16	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27713962	T	T	27713962	1	4	34	0	1	0	0	0	0	0	0	0	1399	841	29	4		4	BDNF	11	27713962	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	988887	27713962	107292554	165	45649											
SLC39A13	91252	broad.mit.edu	37	chr11	47431696	47431696	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggcgggcccaaggctcctCttcctcactgcccttgccct	9	18	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47431696	G	G	47431696	2	3	34	1	0	0	0	0	0	0	0	1	14730	900	32	4		4	SLC39A13	11	47431696	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	19717734	47431696	87574820	166	45650											
OR4C3	256144	broad.mit.edu	37	chr11	48346598	48346598	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acataccacaaaatatcacaGaatttttcatgctggggctc	6	10	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48346598	C	C	48346598	3	2	34	1	0	0	0	0	1	0	0	0	11144	943	33	4	108	4	OR4C3	11	48346598	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	914902	48346598	86659918	167	45651											
OR4D6	219983	broad.mit.edu	37	chr11	59224646	59224646	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacaaatcagtcctggacatCgttttttcatctatcaccgt	5	11	4	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59224646	T	T	59224646	2	4	34	1	0	0	0	0	0	0	0	1	11152	874	31	4		4	OR4D6	11	59224646	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	10878048	59224646	75781870	168	45652											
METTL12	751071	broad.mit.edu	37	chr11	62435266	62435266	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatattactgatatattatCaaattacaaaactaggccag	4	6	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62435266	G	G	62435266	1	3	34	0	1	0	0	0	0	0	0	0	9589	841	29	4		4	METTL12	11	62435266	3'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	3210620	62435266	72571250	169	45653											
CDC42BPG	55561	broad.mit.edu	37	chr11	64603384	64603384	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggcagcccctctgcccacCttaccatggactccagacct	7	19	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64603384	A	A	64603384	1	1	34	0	1	0	0	0	0	0	0	0	3104	696	24	2		2	CDC42BPG	11	64603384	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	2168118	64603384	70403132	170	45654											
NARS2	79731	broad.mit.edu	37	chr11	78204272	78204272	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agattaagagaatgcaaataGaattcacatgattaatttta	6	3	1	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78204272	T	T	78204272	1	4	34	0	1	0	0	0	0	0	0	0	10265	957	33	3		3	NARS2	11	78204272	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	13600888	78204272	56802244	171	45655											
CCDC83	220047	broad.mit.edu	37	chr11	85626533	85626533	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctttggaattgccagaaaCacatataggtattactttat	7	6	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85626533	T	T	85626533	3	4	34	1	0	0	0	0	1	0	0	0	2885	478	17	4	993	4	CCDC83	11	85626533	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	7422261	85626533	49379983	172	45656											
MMP13	4322	broad.mit.edu	37	chr11	102819958	102819958	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctatcctgctagtcacctCtctccacatcaacacagaca	3	16	4	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102819958	G	G	102819958	1	3	34	0	1	0	0	0	0	0	0	0	9745	928	32	4		4	MMP13	11	102819958	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	17193425	102819958	32186558	173	45657											
MLL	4297	broad.mit.edu	37	chr11	118363894	118363894	+	Frame_Shift_Del	DEL	A	-	-													caggatgatcagcagcctttAgatctagaaggagtcaagag							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118363894	-	-	118363894	7	5	34	1	0	1	0	1	0	0	0	0	9713	417	15	0	5180	0	MLL	11	118363894	Frame_Shift_Del	DEL	A	TCGA-05-5715-01A-01D-1625-08	15543936	118363894	16642622	174	45658											
ARHGEF12	23365	broad.mit.edu	37	chr11	120298837	120298837	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtcgccccagattccaCttgccgactctgaagtagag	11	13	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120298837	T	T	120298837	3	4	34	1	0	0	0	0	1	0	0	0	899	565	20	4	496	4	ARHGEF12	11	120298837	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	1934943	120298837	14707679	175	45659											
VSIG2	23584	broad.mit.edu	37	chr11	124619682	124619682	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactggcttaggagccccctCggaagagctgcatctcagtg	12	13	1	1	rs114520645	by1000genomes	TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124619682	T	T	124619682	3	4	34	1	0	0	0	0	1	0	0	0	17351	893	31	4	491	4	VSIG2	11	124619682	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	4320845	124619682	10386834	176	45660											
KDM5A	5927	broad.mit.edu	37	chr12	416587	416587	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatacactgacatatcccatGaaatagaaaaagaatgtaaa	5	6	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	416587	C	C	416587	1	2	34	0	1	0	0	0	0	0	0	0	8203	1305	45	4		4	KDM5A	12	416587	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08		416587	133435308	177	45661											
C1R	715	broad.mit.edu	37	chr12	7188187	7188187	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagccactgacatagcccatCaagcccaggtcgtagaaggt	10	12	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7188187	G	G	7188187	3	3	34	1	0	0	0	0	1	0	0	0	1992	825	29	4	354	4	C1R	12	7188187	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	6771600	7188187	126663708	178	45662											
PDZRN4	29951	broad.mit.edu	37	chr12	41967475	41967475	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgccgtgagttcatgatgcGaagcaggttagagtgtctca	13	8	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41967475	A	A	41967475	3	1	34	1	0	0	0	0	1	0	0	0	11804	1058	37	4	3005	4	PDZRN4	12	41967475	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	34779288	41967475	91884420	179	45663											
PUS7L	83448	broad.mit.edu	37	chr12	44124206	44124206	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatgcttcattatttccttCagacaaacggtagcatagca	6	10	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44124206	T	T	44124206	2	4	34	1	0	0	0	0	0	0	0	1	12942	813	29	4		4	PUS7L	12	44124206	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	2156731	44124206	89727689	180	45664											
NELL2	4753	broad.mit.edu	37	chr12	45097419	45097419	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgcttttaatgggcccatCaacttgacaacctgggaact	8	11	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45097419	G	G	45097419	1	3	34	0	1	0	0	0	0	0	0	0	10429	841	29	4		4	NELL2	12	45097419	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	973213	45097419	88754476	181	45665											
HDAC7	51564	broad.mit.edu	37	chr12	48179570	48179570	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagccacacaggcctcagAggcgtcacagatggctgtga	13	12	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48179570	G	G	48179570	3	3	34	1	0	0	0	0	1	0	0	0	7079	304	11	5	320	5	HDAC7	12	48179570	Missense_Mutation	SNP	A	TCGA-05-5715-01A-01D-1625-08	3082151	48179570	85672325	182	45666											
KRT75	9119	broad.mit.edu	37	chr12	52825905	52825905	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagtctgcattgaactctttCcaggctggtgtagcaagagt	11	8	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52825905	G	G	52825905	1	3	34	0	1	0	0	0	0	0	0	0	8559	870	30	4		4	KRT75	12	52825905	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	4646335	52825905	81025990	183	45667											
KRT1	3848	broad.mit.edu	37	chr12	53069427	53069427	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaggaagctcagttattttCaacctcaactccgtttccag	7	11	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53069427	T	T	53069427	1	4	34	0	1	0	0	0	0	0	0	0	8518	841	29	4		4	KRT1	12	53069427	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	243522	53069427	80782468	184	45668											
SUOX	6821	broad.mit.edu	37	chr12	56398128	56398128	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgaggcccacgtctgctttGagggactggactcagaccct	12	13	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56398128	C	C	56398128	3	2	34	1	0	0	0	0	1	0	0	0	15513	1291	45	4	965	4	SUOX	12	56398128	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	3328701	56398128	77453767	185	45669											
CAND1	55832	broad.mit.edu	37	chr12	67699360	67699360	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgacactgattgctgggTcacctttgaagatagatttg	10	7	1	5			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67699360	C	C	67699360	3	2	34	1	0	0	0	0	1	0	0	0	2641	1667	58	5	1950	5	CAND1	12	67699360	Missense_Mutation	SNP	T	TCGA-05-5715-01A-01D-1625-08	11301232	67699360	66152535	186	45670											
CEP290	80184	broad.mit.edu	37	chr12	88478639	88478639	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttagtttctgcaatgaTtaaattataataaatcatta	3	4	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88478639	C	C	88478639	1	2	34	0	1	0	0	0	0	0	0	0	3283	1508	52	5		5	CEP290	12	88478639	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	20779279	88478639	45373256	187	45671											
DUSP6	1848	broad.mit.edu	37	chr12	89743067	89743067	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtccacctggtatacattCtggttggaaggggtggtaaa	14	6	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89743067	G	G	89743067	3	3	34	1	0	0	0	0	1	0	0	0	4869	912	32	4	39	4	DUSP6	12	89743067	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	1264428	89743067	44108828	188	45672											
UTP20	27340	broad.mit.edu	37	chr12	101750280	101750280	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaagttgcagtgttggtaGatcactgatccatttatttt	8	6	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101750280	C	C	101750280	1	2	34	0	1	0	0	0	0	0	0	0	17226	957	33	4		4	UTP20	12	101750280	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	12007213	101750280	32101615	189	45673											
PWP1	11137	broad.mit.edu	37	chr12	108102817	108102817	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaagagtaatgcttctttCatttttcttaacttatgatg	6	6	3	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108102817	T	T	108102817	1	4	34	0	1	0	0	0	0	0	0	0	12951	841	29	4		4	PWP1	12	108102817	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	6352537	108102817	25749078	190	45674											
TMEM132D	121256	broad.mit.edu	37	chr12	129558864	129558864	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctcatcccttcctgctcctcGaagggaacctgtttgtgtct	8	14	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129558864	C	C	129558864	3	2	34	1	0	0	0	0	1	0	0	0	16170	1049	37	4	447	4	TMEM132D	12	129558864	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	21456047	129558864	4293031	191	45675											
RB1	5925	broad.mit.edu	37	chr13	48942593	48942593	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaacagaagcattatactGcttttttgatgcataaagca	7	7	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48942593	A	A	48942593	1	1	34	0	1	0	0	0	0	0	0	0	13206	1334	46	4		4	RB1	13	48942593	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08		48942593	66227285	192	45676											
KLHL1	57626	broad.mit.edu	37	chr13	70469331	70469331	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caataattttaacaggcactGaatgtgaggtgttaccagtt	9	6	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70469331	A	A	70469331	1	1	34	0	1	0	0	0	0	0	0	0	8436	1305	45	4		4	KLHL1	13	70469331	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	21526738	70469331	44700547	193	45677											
CARKD	55739	broad.mit.edu	37	chr13	111286885	111286885	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcagtctggttttctcttCtggcagggcattttggaagt	12	8	4	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111286885	A	A	111286885	1	1	34	0	1	0	0	0	0	0	0	0	2680	928	32	3		3	CARKD	13	111286885	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	40817554	111286885	3882993	194	45678											
OR4Q3	441669	broad.mit.edu	37	chr14	20216038	20216038	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggttcttgcctgctggtGtgggggttttatccactcta	13	8	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20216038	A	A	20216038	3	1	34	1	0	0	0	0	1	0	0	0	11175	1377	48	4	454	4	OR4Q3	14	20216038	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08		20216038	87133502	195	45679											
OR4K13	390433	broad.mit.edu	37	chr14	20502887	20502887	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtcccaacaaaataaattCcgataccactgaatggtttg	6	9	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20502887	T	T	20502887	3	4	34	1	0	0	0	0	1	0	0	0	11162	864	30	4	885	4	OR4K13	14	20502887	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	286849	20502887	86846653	196	45680											
OXA1L	5018	broad.mit.edu	37	chr14	23235721	23235721	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caatctccagaaaaggctctCtgcgtgctaatggtaacgtg	10	10	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23235721	T	T	23235721	1	4	34	0	1	0	0	0	0	0	0	0	11422	928	32	4		4	OXA1L	14	23235721	5'Flank	SNP	C	TCGA-05-5715-01A-01D-1625-08	2732834	23235721	84113819	197	45681											
MYH6	4624	broad.mit.edu	37	chr14	23874991	23874991	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcaccgtctggagggggcGcataagcaggaggatgagtg	18	7	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23874991	A	A	23874991	1	1	34	0	1	0	0	0	0	0	0	0	10132	1102	38	4		4	MYH6	14	23874991	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	639270	23874991	83474549	198	45682											
AP4S1	11154	broad.mit.edu	37	chr14	31542084	31542084	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggaagcgacactaaaattGattgtacctttcttctttta	7	7	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31542084	C	C	31542084	1	2	34	0	1	0	0	0	0	0	0	0	756	1305	45	4		4	AP4S1	14	31542084	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	7667093	31542084	75807456	199	45683											
KIAA0391	9692	broad.mit.edu	37	chr14	35739633	35739633	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgatccattccttctgtAtgccacactgcactccggga	9	13	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35739633	G	G	35739633	3	3	34	1	0	0	0	0	1	0	0	0	8242	449	16	5	1473	5	KIAA0391	14	35739633	Missense_Mutation	SNP	A	TCGA-05-5715-01A-01D-1625-08	4197549	35739633	71609907	200	45684											
NKX2-1	7080	broad.mit.edu	37	chr14	36988447	36988447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggccctgcctgtacgccGccagcggagccccgaggccg	14	19	0	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36988447	A	A	36988447	3	1	34	1	0	0	0	0	1	0	0	0	10544	1087	38	4	1007	4	NKX2-1	14	36988447	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	1248814	36988447	70361093	201	45685											
C14orf37	145407	broad.mit.edu	37	chr14	58599890	58599890	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggctcccatcttcttgaCagctgagtaacaccaggaac	9	12	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58599890	A	A	58599890	2	1	34	1	0	0	0	0	0	0	0	1	1784	465	17	3		3	C14orf37	14	58599890	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	21611443	58599890	48749650	202	45686											
ATP6V1D	51382	broad.mit.edu	37	chr14	67807182	67807182	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaactcttctcgctctctctCatccagctctgtgatgatat	6	13	5	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67807182	T	T	67807182	3	4	34	1	0	0	0	0	1	0	0	0	1186	835	29	4	174	4	ATP6V1D	14	67807182	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	9207292	67807182	39542358	203	45687											
SIPA1L1	26037	broad.mit.edu	37	chr14	72139160	72139160	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactatgagggcattgtggcGgatgtggagccctacggtta	15	7	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72139160	A	A	72139160	2	1	34	1	0	0	0	0	0	0	0	1	14442	1103	39	4		4	SIPA1L1	14	72139160	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	4331978	72139160	35210380	204	45688											
PTGR2	145482	broad.mit.edu	37	chr14	74340979	74340979	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattcttactttgtgcatttGatattcagttgtgtttgtaa	7	4	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74340979	C	C	74340979	1	2	34	0	1	0	0	0	0	0	0	0	12860	1305	45	4		4	PTGR2	14	74340979	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	2201819	74340979	33008561	205	45689											
AK7	122481	broad.mit.edu	37	chr14	96858464	96858464	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcaagcgagtggcgctttCaccttagcaaccagcgcggc	13	13	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96858464	T	T	96858464	1	4	34	0	1	0	0	0	0	0	0	0	444	841	29	4		4	AK7	14	96858464	5'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	22517485	96858464	10491076	206	45690											
SETD3	84193	broad.mit.edu	37	chr14	99927677	99927677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaaaagtaacggacagaCctatattaatccacgtttta	5	9	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99927677	A	A	99927677	3	1	34	1	0	0	0	0	1	0	0	0	14245	521	18	3	1673	3	SETD3	14	99927677	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	3069213	99927677	7421863	207	45691											
EML1	2009	broad.mit.edu	37	chr14	100377660	100377660	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaatgatgtgctcacggAcaatattgcgttttaaaacc	8	8	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100377660	G	G	100377660	1	3	34	0	1	0	0	0	0	0	0	0	5138	290	10	5		5	EML1	14	100377660	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	449983	100377660	6971880	208	45692											
C15orf2	23742	broad.mit.edu	37	chr15	24924444	24924444	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacccactactatggacaaGaaacatatgttaggagacat	8	9	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24924444	C	C	24924444	3	2	34	1	0	0	0	0	1	0	0	0	1797	943	33	4	3432	4	C15orf2	15	24924444	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08		24924444	77606948	209	45693											
ATP10A	57194	broad.mit.edu	37	chr15	25958906	25958906	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatcggtaagcgggtgccgGatcaccactgacatcctctt	10	13	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25958906	A	A	25958906	2	1	34	1	0	0	0	0	0	0	0	1	1120	1164	41	4		4	ATP10A	15	25958906	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	1034462	25958906	76572486	210	45694											
GABRA5	2558	broad.mit.edu	37	chr15	27182355	27182355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtaccctaattctgaagtcGtttacgtctggaccaacggc	9	12	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182355	A	A	27182355	3	1	34	1	0	0	0	0	1	0	0	0	6224	1145	40	4	626	4	GABRA5	15	27182355	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	1223449	27182355	75349037	211	45695											
ARHGAP11B	89839	broad.mit.edu	37	chr15	30930957	30930957	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgcatttcagattttgttAgtggagcactaaataaattt	7	5	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30930957	T	T	30930957	1	4	34	0	1	0	0	0	0	0	0	0	866	435	15	5		5	ARHGAP11B	15	30930957	3'UTR	SNP	A	TCGA-05-5715-01A-01D-1625-08	3748602	30930957	71600435	212	45696											
MGA	23269	broad.mit.edu	37	chr15	41961679	41961679	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggcatatcatcttgcactCtatgcatcgttacctgccga	8	12	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41961679	G	G	41961679	3	3	34	1	0	0	0	0	1	0	0	0	9633	913	32	4	589	4	MGA	15	41961679	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	11030722	41961679	60569713	213	45697											
MGA	23269	broad.mit.edu	37	chr15	42040834	42040834	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttccatttcctgtttttcaGaaaatgctgctcaaattcca	4	10	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42040834	A	A	42040834	5	1	34	1	0	0	0	0	0	0	1	0	9633	956	33	4	5270	4	MGA	15	42040834	Splice_Site	SNP	G	TCGA-05-5715-01A-01D-1625-08	79155	42040834	60490558	214	45698											
SPTBN5	51332	broad.mit.edu	37	chr15	42150739	42150739	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttcagcaccagctctgggGcactgtcctgtgttctgcct	12	13	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42150739	C	C	42150739	1	2	34	0	1	0	0	0	0	0	0	0	15240	1218	42	4		4	SPTBN5	15	42150739	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	109905	42150739	60380653	215	45699											
FBN1	2200	broad.mit.edu	37	chr15	48808320	48808321	+	Intron	INS	-	A	A													aagtagcataaataaataatINSaaaaaaatgttaacttgaac							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48808321	A	A	48808320	6	5	34	0	1	1	1	0	0	0	0	0	5759	1421	49	0		0	FBN1	15	48808320	Intron	INS	-	TCGA-05-5715-01A-01D-1625-08	6657581	48808320	53723072	216	45700											
FAM63B	54629	broad.mit.edu	37	chr15	59064389	59064389	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccagaatgagaacggaccCtgccccttgctggccatcct	9	16	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59064389	T	T	59064389	2	4	34	1	0	0	0	0	0	0	0	1	5648	668	24	4		4	FAM63B	15	59064389	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	10256069	59064389	43467003	217	45701											
RNF111	54778	broad.mit.edu	37	chr15	59323235	59323235	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcacctgtgtgatgattctCaaaagcaagagaaggaaatg	10	7	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59323235	G	G	59323235	3	3	34	1	0	0	0	0	1	0	0	0	13536	827	29	4	216	4	RNF111	15	59323235	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	258846	59323235	43208157	218	45702											
IQGAP1	8826	broad.mit.edu	37	chr15	90969501	90969501	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacagaccagatacaaggtGagtccttccttgctttgtgc	10	10	0	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90969501	T	T	90969501	1	4	34	0	1	0	0	0	0	0	0	0	7884	1305	45	3		3	IQGAP1	15	90969501	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	31646266	90969501	11561891	219	45703											
CHD2	1106	broad.mit.edu	37	chr15	93515690	93515690	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtggggggaatcaatctctCtctccgcctcccctccccaa	8	17	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93515690	T	T	93515690	1	4	34	0	1	0	0	0	0	0	0	0	3356	928	32	4		4	CHD2	15	93515690	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	2546189	93515690	9015702	220	45704											
HAGHL	84264	broad.mit.edu	37	chr16	777579	777579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatcgaggagctcacgcgcGaggcggtggccgtggacgtg	18	11	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	777579	A	A	777579	3	1	34	1	0	0	0	0	1	0	0	0	7012	1059	37	4	72	4	HAGHL	16	777579	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08		777579	89577174	221	45705											
LMF1	64788	broad.mit.edu	37	chr16	919117	919117	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccaggcacagcccctcCggacgctcggctgtgccctc	11	19	0	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	919117	T	T	919117	1	4	34	0	1	0	0	0	0	0	0	0	8919	667	23	4		4	LMF1	16	919117	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	141538	919117	89435636	222	45706											
TSC2	7249	broad.mit.edu	37	chr16	2122440	2122440	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agactgcgagcctctgggcaGagcgagtgagacccttcggg	16	11	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2122440	C	C	2122440	1	2	34	0	1	0	0	0	0	0	0	0	16731	957	33	4		4	TSC2	16	2122440	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	1203323	2122440	88232313	223	45707											
TEKT5	146279	broad.mit.edu	37	chr16	10769742	10769742	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagggccagcttggcccaGataacactcagattcacggg	13	12	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10769742	C	C	10769742	1	2	34	0	1	0	0	0	0	0	0	0	15878	957	33	4		4	TEKT5	16	10769742	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	8647302	10769742	79585011	224	45708											
SMG1	23049	broad.mit.edu	37	chr16	18882052	18882052	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctatgaaagaacgaaataGacaaagcaggtgtgttaaca	9	5	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18882052	C	C	18882052	1	2	34	0	1	0	0	0	0	0	0	0	14909	957	33	4		4	SMG1	16	18882052	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	8112310	18882052	71472701	225	45709											
C16orf93	90835	broad.mit.edu	37	chr16	30770954	30770954	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggatgggtaaagtttccaGaatgttccaggggaactgac	15	6	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30770954	C	C	30770954	1	2	34	0	1	0	0	0	0	0	0	0	1860	957	33	4		4	C16orf93	16	30770954	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	11888902	30770954	59583799	226	45710											
CES7	221223	broad.mit.edu	37	chr16	55905608	55905608	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcagtcttctgacactcCgaatttcgggtaatgcacct	10	11	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55905608	T	T	55905608	3	4	34	1	0	0	0	0	1	0	0	0	3302	661	23	4	1425	4	CES7	16	55905608	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	25134654	55905608	34449145	227	45711											
AMFR	267	broad.mit.edu	37	chr16	56436943	56436943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagatagttcttgtgccgacGaattcgacgttgcacctcat	9	10	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56436943	A	A	56436943	3	1	34	1	0	0	0	0	1	0	0	0	571	1058	37	4	1035	4	AMFR	16	56436943	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	531335	56436943	33917810	228	45712											
MT1A	4489	broad.mit.edu	37	chr16	56673301	56673301	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtcagaggcaggaaaccaGagctgggcatggaggagtag	17	6	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56673301	A	A	56673301	1	1	34	0	1	0	0	0	0	0	0	0	9991	957	33	4		4	MT1A	16	56673301	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	236358	56673301	33681452	229	45713											
MT1X	4501	broad.mit.edu	37	chr16	56716968	56716968	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagtgggaaaggagctcTgggggctggtccttcagcac	16	10	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56716968	C	C	56716968	1	2	34	0	1	0	0	0	0	0	0	0	9998	1595	55	5		5	MT1X	16	56716968	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	43667	56716968	33637785	230	45714											
TMEM208	29100	broad.mit.edu	37	chr16	67261116	67261116	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccgggctgggtatttgcctCgcaccatggcggtaaggagg	16	11	0	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67261116	G	G	67261116	1	3	34	0	1	0	0	0	0	0	0	0	16256	899	31	4		4	TMEM208	16	67261116	5'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	10544148	67261116	23093637	231	45715											
SLC7A6	9057	broad.mit.edu	37	chr16	68330752	68330752	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattactcactggcggctatGtgtgcatgcgcatgcagagg	13	10	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68330752	C	C	68330752	1	2	34	0	1	0	0	0	0	0	0	0	14815	1392	48	4		4	SLC7A6	16	68330752	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	1069636	68330752	22024001	232	45716											
EXOSC6	118460	broad.mit.edu	37	chr16	70284909	70284909	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcgacgcaaactggaggCcgatggcgcgggtcttttcg	14	11	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70284909	A	A	70284909	1	1	34	0	1	0	0	0	0	0	0	0	5361	754	26	3		3	EXOSC6	16	70284909	3'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	1954157	70284909	20069844	233	45717											
GAN	8139	broad.mit.edu	37	chr16	81399218	81399218	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataacgtctcatgcatactaGatatttattcagtgacttca	5	8	3	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81399218	C	C	81399218	1	2	34	0	1	0	0	0	0	0	0	0	6294	957	33	4		4	GAN	16	81399218	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	11114309	81399218	8955535	234	45718											
CDT1	81620	broad.mit.edu	37	chr16	88872241	88872241	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggatggcaccaggaggtcaGattaccagctcaccatcgag	12	11	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88872241	C	C	88872241	3	2	34	1	0	0	0	0	1	0	0	0	3210	942	33	4	814	4	CDT1	16	88872241	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	7473023	88872241	1482512	235	45719											
USP6	9098	broad.mit.edu	37	chr17	5038451	5038452	+	Intron	INS	-	TGC	TGC													tctgaacctgaaatgggattINStgttaggatttgtagacaaa							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGC	5038452	TGC	TGC	5038451	6	5	34	0	1	1	1	0	0	0	0	0	17213	1856	64	0		0	USP6	17	5038451	Intron	INS	-	TCGA-05-5715-01A-01D-1625-08		5038451	76156759	236	45720											
NLRP1	22861	broad.mit.edu	37	chr17	5445168	5445168	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctccccctgcccaccaagAacaattactgcagtcgctgt	6	17	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5445168	G	G	5445168	1	3	34	0	1	0	0	0	0	0	0	0	10566	261	9	5		5	NLRP1	17	5445168	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	406717	5445168	75750042	237	45721											
RANGRF	29098	broad.mit.edu	37	chr17	8192632	8192661	+	In_Frame_Del	DEL	CTGTTCAGCCTCTCAGTTTGGAGAACCTGG	-	-													tagggctgtccatgtggagtCtgttcagcctctcagtttgg					rs138959557	byFrequency;by1000genomes	TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8192661	-	-	8192632	7	5	34	1	0	1	0	1	0	0	0	0	13142	913	32	0	261	0	RANGRF	17	8192632	In_Frame_Del	DEL	CTGTTCAGCCTCTCAGTTTGGAGAACCTGG	TCGA-05-5715-01A-01D-1625-08	2747464	8192632	73002578	238	45722											
NUFIP2	57532	broad.mit.edu	37	chr17	27613864	27613864	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttccccggtagatgatgaaGatgatgaagatgaagttggt	13	4	0	8			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27613864	C	C	27613864	3	2	34	1	0	0	0	0	1	0	0	0	10844	942	33	4	951	4	NUFIP2	17	27613864	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	19421232	27613864	53581346	239	45723											
NF1	4763	broad.mit.edu	37	chr17	29664477	29664477	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attagcaaagtcaagtcagcTgctgtcattgccttccgttc	8	11	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29664477	G	G	29664477	2	3	34	1	0	0	0	0	0	0	0	1	10451	1567	55	5		5	NF1	17	29664477	Silent	SNP	T	TCGA-05-5715-01A-01D-1625-08	2050613	29664477	51530733	240	45724											
PSMD11	5717	broad.mit.edu	37	chr17	30781559	30781559	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgacccttcttgaattccatCagcaaggctaaagcagctcg	8	13	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30781559	G	G	30781559	3	3	34	1	0	0	0	0	1	0	0	0	12800	816	29	4	250	4	PSMD11	17	30781559	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	1117082	30781559	50413651	241	45725											
FNDC8	54752	broad.mit.edu	37	chr17	33454046	33454046	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcatctgattcacctgtctCcccttttgctccaggaagcc	6	15	4	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33454046	T	T	33454046	1	4	34	0	1	0	0	0	0	0	0	0	6032	870	30	4		4	FNDC8	17	33454046	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	2672487	33454046	47741164	242	45726											
GPR179	440435	broad.mit.edu	37	chr17	36486375	36486375	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggccctccagagcctggctCgagctggggcaggggagtgg	20	11	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36486375	T	T	36486375	3	4	34	1	0	0	0	0	1	0	0	0	6739	884	31	4	4030	4	GPR179	17	36486375	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	3032329	36486375	44708835	243	45727											
ERBB2	2064	broad.mit.edu	37	chr17	37880981	37880982	+	In_Frame_Ins	INS	-	GCATACGTGATG	GCATACGTGATG													cgtacccttgtccccaggaaINSgcatacgtgatggctggtgt							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	GCATACGTGATG	37880982	GCATACGTGATG	GCATACGTGATG	37880981	7	5	34	1	0	1	1	0	0	0	0	0	5248	69	3	0	2388	0	ERBB2	17	37880981	In_Frame_Ins	INS	-	TCGA-05-5715-01A-01D-1625-08	1394606	37880981	43314229	244	45728											
PSMC3IP	29893	broad.mit.edu	37	chr17	40729545	40729545	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggagctgtagggccggttCtgctcctgcaggtacctcag	15	11	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40729545	G	G	40729545	3	3	34	1	0	0	0	0	1	0	0	0	12794	912	32	4	612	4	PSMC3IP	17	40729545	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	2848564	40729545	40465665	245	45729											
ASB16	92591	broad.mit.edu	37	chr17	42248104	42248104	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaagggaggtagtcgggtCgagggaacctggctctgccc	17	10	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42248104	T	T	42248104	1	4	34	0	1	0	0	0	0	0	0	0	1024	899	31	4		4	ASB16	17	42248104	5'UTR	SNP	C	TCGA-05-5715-01A-01D-1625-08	1518559	42248104	38947106	246	45730											
HOXB6	3216	broad.mit.edu	37	chr17	46675091	46675091	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgacggcgacgggaagtctCactcactgttgcacgaattc	12	12	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46675091	T	T	46675091	1	4	34	0	1	0	0	0	0	0	0	0	7372	841	29	4		4	HOXB6	17	46675091	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	4426987	46675091	34520119	247	45731											
MRPS23	51649	broad.mit.edu	37	chr17	55917333	55917333	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtatcacagagatgttaTcattttcactcaattaattc	4	7	4	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55917333	C	C	55917333	1	2	34	0	1	0	0	0	0	0	0	0	9928	1450	50	5		5	MRPS23	17	55917333	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	9242242	55917333	25277877	248	45732											
TLK2	11011	broad.mit.edu	37	chr17	60655841	60655841	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttccttttcgctttaggagGaagcagagatccaggcagag	12	8	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60655841	A	A	60655841	3	1	34	1	0	0	0	0	1	0	0	0	16067	1175	41	4	1242	4	TLK2	17	60655841	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	4738508	60655841	20539369	249	45733											
AZI1	22994	broad.mit.edu	37	chr17	79166231	79166231	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccagtcagtcccaccccGtgcagccccctggccaggcc	11	20	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79166231	A	A	79166231	1	1	34	0	1	0	0	0	0	0	0	0	1245	1160	40	4		4	AZI1	17	79166231	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	18510390	79166231	2028979	250	45734											
FASN	2194	broad.mit.edu	37	chr17	80040601	80040601	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgggccagggtacggtctCttccctacacgccgggctgg	14	14	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80040601	T	T	80040601	1	4	34	0	1	0	0	0	0	0	0	0	5740	928	32	4		4	FASN	17	80040601	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	874370	80040601	1154609	251	45735											
LAMA1	284217	broad.mit.edu	37	chr18	6966263	6966263	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgacagagtacccactcccGtcaaaatggaaggaagggtc	11	11	1	1	rs149366807	byFrequency	TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6966263	A	A	6966263	2	1	34	1	0	0	0	0	0	0	0	1	8677	1136	40	4		4	LAMA1	18	6966263	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08		6966263	71110985	252	45736											
DSC3	1825	broad.mit.edu	37	chr18	28602410	28602410	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgctgtatttcaggcgCgtatgcattgtgtccggttc	11	8	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28602410	T	T	28602410	2	4	34	1	0	0	0	0	0	0	0	1	4807	755	27	4		4	DSC3	18	28602410	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	21636147	28602410	49474838	253	45737											
SMAD4	4089	broad.mit.edu	37	chr18	48584552	48584552	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggactgttgcagatagcatCagggcctcagccaggacagc	13	11	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48584552	G	G	48584552	4	3	34	1	0	0	0	0	0	1	0	0	14874	838	29	4	743	4	SMAD4	18	48584552	Nonsense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	19982142	48584552	29492696	254	45738											
ATP8B3	148229	broad.mit.edu	37	chr19	1785556	1785556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgggtcccgccgtgtcgCggctgatccacagtgtcatg	15	13	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1785556	T	T	1785556	3	4	34	1	0	0	0	0	1	0	0	0	1200	768	27	4	613	4	ATP8B3	19	1785556	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08		1785556	57343427	255	45739											
NFIC	4782	broad.mit.edu	37	chr19	3381997	3381997	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggcgccgggctgcgtgctCtccaaccccgaccagaaggg	14	15	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3381997	G	G	3381997	2	3	34	1	0	0	0	0	0	0	0	1	10467	900	32	4		4	NFIC	19	3381997	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	1596441	3381997	55746986	256	45740											
GIPC3	126326	broad.mit.edu	37	chr19	3586442	3586442	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcagacagggtggctgcGtggggggatgcatgccctgg	20	9	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3586442	A	A	3586442	1	1	34	0	1	0	0	0	0	0	0	0	6458	1160	40	4		4	GIPC3	19	3586442	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	204445	3586442	55542541	257	45741											
MAP2K2	5605	broad.mit.edu	37	chr19	4110460	4110460	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccttctccccaacatgctCtgttccgtggaggccctgcc	8	17	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4110460	G	G	4110460	1	3	34	0	1	0	0	0	0	0	0	0	9329	928	32	4		4	MAP2K2	19	4110460	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	524018	4110460	55018523	258	45742											
C3	718	broad.mit.edu	37	chr19	6707234	6707234	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgagaacctcatggggttctCccgcatgccgtcctcgcagc	11	16	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6707234	G	G	6707234	3	3	34	1	0	0	0	0	1	0	0	0	2226	864	30	4	2993	4	C3	19	6707234	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	2596774	6707234	52421749	259	45743											
PSG6	5675	broad.mit.edu	37	chr19	43414552	43414552	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggagaagcctcttctctCttattgttgatcaagcctag	8	10	4	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43414552	T	T	43414552	1	4	34	0	1	0	0	0	0	0	0	0	12765	928	32	4		4	PSG6	19	43414552	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	36707318	43414552	15714431	260	45744											
PSG9	5678	broad.mit.edu	37	chr19	43765803	43765803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaagctgtggacccagaGtctcccatgacacagcagcc	9	15	2	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43765803	T	T	43765803	1	4	34	0	1	0	0	0	0	0	0	0	12768	1044	36	3		3	PSG9	19	43765803	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	351251	43765803	15363180	261	45745											
ZNF180	7733	broad.mit.edu	37	chr19	44980651	44980651	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atagagtttctcttcagtatGagttgcctgatgcctaataa	8	7	2	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44980651	C	C	44980651	3	2	34	1	0	0	0	0	1	0	0	0	17874	1290	45	4	35	4	ZNF180	19	44980651	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	1214848	44980651	14148332	262	45746											
BAX	581	broad.mit.edu	37	chr19	49464213	49464213	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacccccaccaccgcgccctCaccaccgcccctgccccacc	4	29	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49464213	G	G	49464213	1	3	34	0	1	0	0	0	0	0	0	0	1333	813	29	4		4	BAX	19	49464213	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	4483562	49464213	9664770	263	45747			3	41		4	4	5397	N	G_C	2.290439e-05
FTL	2512	broad.mit.edu	37	chr19	49469412	49469412	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggacagggtgcggagagtGataaatacaagctgtcacat	13	6	1	2	rs77396842	byFrequency;by1000genomes	TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49469412	C	C	49469412	1	2	34	0	1	0	0	0	0	0	0	0	6144	1305	45	4		4	FTL	19	49469412	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	5199	49469412	9659571	264	45748			3	41		4	4	5397	N	G_C	2.290439e-05
FTL	2512	broad.mit.edu	37	chr19	49469553	49469553	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatagaagccagctgaagatGagtggggtaaaaccccagac	12	8	0	5			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49469553	C	C	49469553	3	2	34	1	0	0	0	0	1	0	0	0	6144	1291	45	4	275	4	FTL	19	49469553	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	141	49469553	9659430	265	45749			3	41		4	4	5397	N	G_C	2.290439e-05
FTL	2512	broad.mit.edu	37	chr19	49469609	49469609	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggccctggagaaaaagctGaaccaggcccttttggatct	11	10	1	2	rs11553263		TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49469609	T	T	49469609	2	4	34	1	0	0	0	0	0	0	0	1	6144	1277	45	3		3	FTL	19	49469609	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	56	49469609	9659374	266	45750			3	41		4	4	5397	N	G_C	2.290439e-05
POLD1	5424	broad.mit.edu	37	chr19	50911948	50911948	+	Intron	DEL	T	-	-													tgctcccagccaatgaatgaTtttttttttttaaagggtga							TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50911948	-	-	50911948	6	5	34	0	1	1	0	1	0	0	0	0	12285	1508	52	0		0	POLD1	19	50911948	Intron	DEL	T	TCGA-05-5715-01A-01D-1625-08	1442339	50911948	8217035	267	45751											
SPIB	6689	broad.mit.edu	37	chr19	50926966	50926966	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtctcggacagcgagtcGgatgaggccctcgtggctgg	18	10	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50926966	A	A	50926966	2	1	34	1	0	0	0	0	0	0	0	1	15168	1103	39	4		4	SPIB	19	50926966	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	15018	50926966	8202017	268	45752											
ZNF836	162962	broad.mit.edu	37	chr19	52658555	52658555	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgaatactccgatgacgtGctagtgttgattgatgacga	11	6	0	5			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52658555	A	A	52658555	3	1	34	1	0	0	0	0	1	0	0	0	18316	1319	46	4	431	4	ZNF836	19	52658555	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	1731589	52658555	6470428	269	45753											
NLRP13	126204	broad.mit.edu	37	chr19	56435826	56435826	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaatactggaagaactaGatggaaagagtttttaattt	9	2	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56435826	C	C	56435826	1	2	34	0	1	0	0	0	0	0	0	0	10570	957	33	4		4	NLRP13	19	56435826	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	3777271	56435826	2693157	270	45754											
ZBTB45	84878	broad.mit.edu	37	chr19	59028392	59028392	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatcctcgccatcggtctCatcgtcactttcctcgtcat	6	17	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59028392	T	T	59028392	3	4	34	1	0	0	0	0	1	0	0	0	17672	835	29	4	894	4	ZBTB45	19	59028392	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	2592566	59028392	100591	271	45755											
PYGB	5834	broad.mit.edu	37	chr20	25263896	25263896	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaggtgttcatcagggacGtggccaaggtcaaacaggta	14	8	3	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25263896	A	A	25263896	3	1	34	1	0	0	0	0	1	0	0	0	12968	1145	40	4	1653	4	PYGB	20	25263896	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08		25263896	37761624	272	45756											
PLUNC	51297	broad.mit.edu	37	chr20	31825443	31825443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccccaggtgtcagggcagGtggtggataaattcctctct	12	12	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31825443	A	A	31825443	1	1	34	0	1	0	0	0	0	0	0	0	12210	1276	44	4		4	PLUNC	20	31825443	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	6561547	31825443	31200077	273	45757											
HNF4A	3172	broad.mit.edu	37	chr20	42984468	42984468	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcagcgtgaacgcgcccctCggggctccagtggagagttc	15	13	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42984468	T	T	42984468	2	4	34	1	0	0	0	0	0	0	0	1	7320	871	31	4		4	HNF4A	20	42984468	Silent	SNP	C	TCGA-05-5715-01A-01D-1625-08	11159025	42984468	20041052	274	45758											
SLC17A9	63910	broad.mit.edu	37	chr20	61596969	61596969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctttcctgcagggcatggGccttggcctctccagcgtct	12	15	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61596969	T	T	61596969	3	4	34	1	0	0	0	0	1	0	0	0	14537	1203	42	3	991	3	SLC17A9	20	61596969	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	18612501	61596969	1428551	275	45759											
PTK6	5753	broad.mit.edu	37	chr20	62168655	62168655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggcccaggtgagcctggtCccgggacaccatggcgggcg	19	13	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62168655	A	A	62168655	3	1	34	1	0	0	0	0	1	0	0	0	12870	855	30	3	1374	3	PTK6	20	62168655	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	571686	62168655	856865	276	45760											
KRTAP8-1	337879	broad.mit.edu	37	chr21	32185280	32185280	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaggagtggatacgggggGaacctggagatgtggggctc	20	5	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32185280	A	A	32185280	1	1	34	0	1	0	0	0	0	0	0	0	8644	1189	41	4		4	KRTAP8-1	21	32185280	3'UTR	SNP	G	TCGA-05-5715-01A-01D-1625-08		32185280	15944615	277	45761											
IL10RB	3588	broad.mit.edu	37	chr21	34649001	34649001	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaccttgagagtcagggctGaatttgcagatgagcattca	11	8	2	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34649001	A	A	34649001	3	1	34	1	0	0	0	0	1	0	0	0	7691	1291	45	4	284	4	IL10RB	21	34649001	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	2463721	34649001	13480894	278	45762											
IL10RB	3588	broad.mit.edu	37	chr21	34649200	34649200	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcttaaggaatataataaaGagagttgtatccctaaagaa	8	4	0	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34649200	C	C	34649200	1	2	34	0	1	0	0	0	0	0	0	0	7691	957	33	4		4	IL10RB	21	34649200	Intron	SNP	G	TCGA-05-5715-01A-01D-1625-08	199	34649200	13480695	279	45763											
RTDR1	27156	broad.mit.edu	37	chr22	23406339	23406339	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaaagggcactgagggCgggctggccacacacccacc	15	14	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23406339	T	T	23406339	1	4	34	0	1	0	0	0	0	0	0	0	13830	783	27	4		4	RTDR1	22	23406339	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08		23406339	27898227	280	45764											
EWSR1	2130	broad.mit.edu	37	chr22	29668239	29668239	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccaagctgcagcgcagcaGgggtaagtcagtcttttata	12	9	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29668239	A	A	29668239	2	1	34	1	0	0	0	0	0	0	0	1	5338	991	35	4		4	EWSR1	22	29668239	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	6261900	29668239	21636327	281	45765											
SF3A1	10291	broad.mit.edu	37	chr22	30735373	30735373	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgactcagggccccaactCttgtcctctgggctcgggga	14	13	3	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30735373	G	G	30735373	1	3	34	0	1	0	0	0	0	0	0	0	14259	928	32	4		4	SF3A1	22	30735373	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1067134	30735373	20569193	282	45766			4	42		3	3	1082	C		5.444079e-05
SF3A1	10291	broad.mit.edu	37	chr22	30736439	30736439	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagttaagagggtggtatttCatgcgtgcatcattcatcaa	11	6	4	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30736439	T	T	30736439	1	4	34	0	1	0	0	0	0	0	0	0	14259	841	29	4		4	SF3A1	22	30736439	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1066	30736439	20568127	283	45767			4	42		3	3	1082	C		5.444079e-05
SF3A1	10291	broad.mit.edu	37	chr22	30736454	30736454	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttcatgcgtgcatcattCatcaaggcatctattcagtg	7	9	6	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30736454	T	T	30736454	1	4	34	0	1	0	0	0	0	0	0	0	14259	841	29	4		4	SF3A1	22	30736454	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	15	30736454	20568112	284	45768			4	42		3	3	1082	C		5.444079e-05
EIF3L	51386	broad.mit.edu	37	chr22	38274173	38274173	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaggttgacttctacattGataaggtatgcctgtcccct	9	10	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38274173	A	A	38274173	3	1	34	1	0	0	0	0	1	0	0	0	5064	1290	45	4	1612	4	EIF3L	22	38274173	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	7537719	38274173	13030393	285	45769											
EP300	2033	broad.mit.edu	37	chr22	41564289	41564289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttccctgcactcatatgAcatgtaaatctgcaaagtag	7	9	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41564289	G	G	41564289	1	3	34	0	1	0	0	0	0	0	0	0	5190	290	10	5		5	EP300	22	41564289	Intron	SNP	A	TCGA-05-5715-01A-01D-1625-08	3290116	41564289	9740277	286	45770											
DMD	1756	broad.mit.edu	37	chrX	31279101	31279101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagagctctgtcattttgGgatggtcccagcaagttgtt	13	7	2	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31279101	T	T	31279101	3	4	34	1	0	0	0	0	1	0	0	0	4620	1232	43	2	1958	2	DMD	23	31279101	Missense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08		31279101	123991459	287	45771											
DMD	1756	broad.mit.edu	37	chrX	32536068	32536068	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcacagataacaaagcaCggagtttacaagcagcacaa	8	9	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32536068	T	T	32536068	1	4	34	0	1	0	0	0	0	0	0	0	4620	551	19	4		4	DMD	23	32536068	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	1256967	32536068	122734492	288	45772											
DMD	1756	broad.mit.edu	37	chrX	32584085	32584085	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttttgcgtgtatttgctCatttgcatagataagaaaat	8	5	1	2			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32584085	T	T	32584085	1	4	34	0	1	0	0	0	0	0	0	0	4620	841	29	4		4	DMD	23	32584085	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	48017	32584085	122686475	289	45773											
HDAC6	10013	broad.mit.edu	37	chrX	48681322	48681322	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctccctccctggttccagAggtagaagacagagaaggac	11	11	1	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48681322	G	G	48681322	3	3	34	1	0	0	0	0	1	0	0	0	7078	318	11	5	2607	5	HDAC6	23	48681322	Missense_Mutation	SNP	A	TCGA-05-5715-01A-01D-1625-08	16097237	48681322	106589238	290	45774											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs143435240	byFrequency;by1000genomes	TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51076024	A	A	51076024	2	1	34	1	0	0	0	0	0	0	0	1	10821	991	35	4		4	NUDT10	23	51076024	Silent	SNP	G	TCGA-05-5715-01A-01D-1625-08	2394702	51076024	104194536	291	45775											
TRO	7216	broad.mit.edu	37	chrX	54950106	54950106	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgtaagtgcccttgagactCaggttgctgctgctgtccag	12	11	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54950106	G	G	54950106	3	3	34	1	0	0	0	0	1	0	0	0	16699	827	29	4	1147	4	TRO	23	54950106	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	3874082	54950106	100320454	292	45776											
ZXDA	7789	broad.mit.edu	37	chrX	57935303	57935303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgagcagagaacctggcacAgcagcctgccacaggacaca	12	14	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57935303	T	T	57935303	3	4	34	1	0	0	0	0	1	0	0	0	18379	188	7	5	851	5	ZXDA	23	57935303	Missense_Mutation	SNP	A	TCGA-05-5715-01A-01D-1625-08	2985197	57935303	97335257	293	45777											
NOX1	27035	broad.mit.edu	37	chrX	100110955	100110955	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttttcttgccactgcctCagtcatgatttcaatcactt	4	14	5	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100110955	T	T	100110955	1	4	34	0	1	0	0	0	0	0	0	0	10651	841	29	4		4	NOX1	23	100110955	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	42175652	100110955	55159605	294	45778											
NRK	203447	broad.mit.edu	37	chrX	105167115	105167115	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgtgcacacaggttccAgatggatttaaagtaggaaa	10	6	1	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105167115	T	T	105167115	2	4	34	1	0	0	0	0	0	0	0	1	10750	175	7	5		5	NRK	23	105167115	Silent	SNP	A	TCGA-05-5715-01A-01D-1625-08	5056160	105167115	50103445	295	45779											
DOCK11	139818	broad.mit.edu	37	chrX	117788871	117788871	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatcctttttcaggctgCgatgtgttatgtccatgtag	10	8	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117788871	T	T	117788871	3	4	34	1	0	0	0	0	1	0	0	0	4726	768	27	4	5090	4	DOCK11	23	117788871	Missense_Mutation	SNP	C	TCGA-05-5715-01A-01D-1625-08	12621756	117788871	37481689	296	45780											
GRIA3	2892	broad.mit.edu	37	chrX	122488843	122488843	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaagtgtccctgggcaaTatatcctatttagtttgaat	8	7	0	1			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122488843	C	C	122488843	1	2	34	0	1	0	0	0	0	0	0	0	6835	1421	49	5		5	GRIA3	23	122488843	Intron	SNP	T	TCGA-05-5715-01A-01D-1625-08	4699972	122488843	32781717	297	45781											
SMARCA1	6594	broad.mit.edu	37	chrX	128582537	128582537	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttccaaaactgctatttttCaggacaatattcacacaggg	6	9	2	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128582537	G	G	128582537	1	3	34	0	1	0	0	0	0	0	0	0	14882	841	29	4		4	SMARCA1	23	128582537	Intron	SNP	C	TCGA-05-5715-01A-01D-1625-08	6093694	128582537	26688023	298	45782											
SLC9A6	10479	broad.mit.edu	37	chrX	135115594	135115594	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttcctgaaaatgaaaggAgaactaccaaagcagagagt	11	6	0	4			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135115594	G	G	135115594	3	3	34	1	0	0	0	0	1	0	0	0	14832	296	11	5	1723	5	SLC9A6	23	135115594	Missense_Mutation	SNP	A	TCGA-05-5715-01A-01D-1625-08	6533057	135115594	20154966	299	45783											
CD99L2	83692	broad.mit.edu	37	chrX	149944650	149944650	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggtggctgcacttacgctGaatgctgaagcagaacttct	12	9	1	3			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149944650	A	A	149944650	4	1	34	1	0	0	0	0	0	1	0	0	3081	1299	45	4	148	4	CD99L2	23	149944650	Nonsense_Mutation	SNP	G	TCGA-05-5715-01A-01D-1625-08	14829056	149944650	5325910	300	45784											
MAGEA12	4111	broad.mit.edu	37	chrX	151899779	151899779	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcacacgaggcagtggaaActaatggatggggccttgga	14	7	1	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151899779	G	G	151899779	1	3	34	0	1	0	0	0	0	0	0	0	9254	58	2	5		5	MAGEA12	23	151899779	3'UTR	SNP	A	TCGA-05-5715-01A-01D-1625-08	1955129	151899779	3370781	301	45785											
MAGEA12	4111	broad.mit.edu	37	chrX	151899795	151899795	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaactaatggatggggccTtggaaggtgcactggcccag	16	8	0	0			TCGA-05-5715-01A-01D-1625-08	TCGA-05-5715-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151899795	C	C	151899795	1	2	34	0	1	0	0	0	0	0	0	0	9254	1624	56	5		5	MAGEA12	23	151899795	3'UTR	SNP	T	TCGA-05-5715-01A-01D-1625-08	16	151899795	3370765	302	45786											
CCDC27	148870	broad.mit.edu	37	chr1	3672165	3672165	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggcctctgcctgcacctGctgggcccctgagctcgagg	14	15	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3672165	A	A	3672165	1	1	35	0	1	0	0	0	0	0	0	0	2828	1334	46	4		4	CCDC27	1	3672165	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08		3672165	245578456	1	45787											
CHD5	26038	broad.mit.edu	37	chr1	6196606	6196606	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctggagtcaggaagttgagGagatggaacagctcctccag	14	8	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6196606	T	T	6196606	2	4	35	1	0	0	0	0	0	0	0	1	3359	1161	41	3		3	CHD5	1	6196606	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2524441	6196606	243054015	2	45788											
KIF1B	23095	broad.mit.edu	37	chr1	10355101	10355101	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgttaccacagctctctCatggtgccctgctccaaatt	7	13	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10355101	T	T	10355101	1	4	35	0	1	0	0	0	0	0	0	0	8354	841	29	4		4	KIF1B	1	10355101	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	4158495	10355101	238895520	3	45789											
UBR4	23352	broad.mit.edu	37	chr1	19492312	19492312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttcaatgtcctccttaTggtgatttattaaaatccaa	5	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19492312	C	C	19492312	1	2	35	0	1	0	0	0	0	0	0	0	17030	1479	51	5		5	UBR4	1	19492312	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	9137211	19492312	229758309	4	45790											
HSPG2	3339	broad.mit.edu	37	chr1	22199389	22199389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccccatgccctgcccccCatgcccaggtctcggcttcc	8	22	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22199389	A	A	22199389	1	1	35	0	1	0	0	0	0	0	0	0	7500	609	21	2		2	HSPG2	1	22199389	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2707077	22199389	227051232	5	45791											
C1orf128	57095	broad.mit.edu	37	chr1	24105997	24105997	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatctccttggtgcctacctCaggctaaataggctgtaccc	8	13	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24105997	T	T	24105997	1	4	35	0	1	0	0	0	0	0	0	0	2015	841	29	4		4	C1orf128	1	24105997	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1906608	24105997	225144624	6	45792											
STMN1	3925	broad.mit.edu	37	chr1	26227995	26227995	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaccttctctcgcaaaCgttccagtttggcagccatt	6	14	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26227995	G	G	26227995	3	3	35	1	0	0	0	0	1	0	0	0	15426	536	19	4	243	4	STMN1	1	26227995	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2121998	26227995	223022626	7	45793											
KIAA0467	23334	broad.mit.edu	37	chr1	43904467	43904467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcttgttcggaactgcaaGctgacaccagctgatgtgga	12	9	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43904467	T	T	43904467	3	4	35	1	0	0	0	0	1	0	0	0	8248	962	34	3	4027	3	KIAA0467	1	43904467	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	17676472	43904467	205346154	8	45794											
PIK3R3	8503	broad.mit.edu	37	chr1	46554551	46554552	+	Intron	INS	-	A	A													ctaaaatctatcacaaggggINSaaaaaaaaaaaaaaaggtca							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46554552	A	A	46554551	6	5	35	0	1	1	1	0	0	0	0	0	12015	1189	41	0		0	PIK3R3	1	46554551	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	2650084	46554551	202696070	9	45795											
AGBL4	84871	broad.mit.edu	37	chr1	50307631	50307631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagcgtgtcctccacctcGtacctggcctcgtccttgca	9	17	0	0	rs144214635	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50307631	T	T	50307631	1	4	35	0	1	0	0	0	0	0	0	0	377	1160	40	3		3	AGBL4	1	50307631	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3753080	50307631	198942990	10	45796											
KANK4	163782	broad.mit.edu	37	chr1	62704060	62704060	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgtgcggccagcctacagGagaaaaaggaaagaagaaat	13	7	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62704060	A	A	62704060	1	1	35	0	1	0	0	0	0	0	0	0	8049	1189	41	4		4	KANK4	1	62704060	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	12396429	62704060	186546561	11	45797											
USP1	7398	broad.mit.edu	37	chr1	62908992	62908992	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgcttaacacactgaggTatagcctataatataatttt	6	7	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62908992	C	C	62908992	5	2	35	1	0	0	0	0	0	0	1	0	17166	1652	57	5	573	5	USP1	1	62908992	Splice_Site	SNP	T	TCGA-17-Z000-01A-01W-0746-08	204932	62908992	186341629	12	45798											
CACHD1	57685	broad.mit.edu	37	chr1	65099811	65099811	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttgtctccagccaccagtGagacaaaaaggaaaatgtcc	8	11	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65099811	A	A	65099811	3	1	35	1	0	0	0	0	1	0	0	0	2563	1291	45	4	747	4	CACHD1	1	65099811	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2190819	65099811	184150810	13	45799											
TGFBR3	7049	broad.mit.edu	37	chr1	92184900	92184900	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaccacaccatcaagggctGaccaccggggccgagtaccg	12	15	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92184900	A	A	92184900	3	1	35	1	0	0	0	0	1	0	0	0	15946	1294	45	4	1052	4	TGFBR3	1	92184900	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	27085089	92184900	157065721	14	45800											
MAGI3	260425	broad.mit.edu	37	chr1	114186352	114186352	+	Intron	DEL	T	-	-													tggttttaaactttggttcaTtttttttttaaggtcctcct							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114186352	-	-	114186352	6	5	35	0	1	1	0	1	0	0	0	0	9284	1508	52	0		0	MAGI3	1	114186352	Intron	DEL	T	TCGA-17-Z000-01A-01W-0746-08	22001452	114186352	135064269	15	45801											
PTGFRN	5738	broad.mit.edu	37	chr1	117472591	117472591	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcgctttcctggaggttGccagtgattacttagccatc	10	10	0	1	rs150607889	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117472591	A	A	117472591	1	1	35	0	1	0	0	0	0	0	0	0	12856	1334	46	4		4	PTGFRN	1	117472591	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3286239	117472591	131778030	16	45802											
WDR3	10885	broad.mit.edu	37	chr1	118479447	118479447	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtggtctgtaccgtctaaAggggcacaaggatgccatca	12	9	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118479447	T	T	118479447	3	4	35	1	0	0	0	0	1	0	0	0	17412	72	3	5	447	5	WDR3	1	118479447	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	1006856	118479447	130771174	17	45803											
WDR3	10885	broad.mit.edu	37	chr1	118492649	118492649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaacccgaactttgcaaCtagatgaagatgttctgtgt	9	8	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118492649	A	A	118492649	3	1	35	1	0	0	0	0	1	0	0	0	17412	564	20	3	1696	3	WDR3	1	118492649	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	13202	118492649	130757972	18	45804											
NOTCH2	4853	broad.mit.edu	37	chr1	120563493	120563494	+	Intron	INS	-	A	A													cctcatatttacgtgaaggcINSaaaaaactggatagaatgct					rs143665122	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120563494	A	A	120563493	6	5	35	0	1	1	1	0	0	0	0	0	10643	725	25	0		0	NOTCH2	1	120563493	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	2070844	120563493	128687128	19	45805											
PDE4DIP	9659	broad.mit.edu	37	chr1	145004675	145004675	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacttggtatttgttcacaaTtggttcaactcagattattt	7	6	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145004675	A	A	145004675	1	1	35	0	1	0	0	0	0	0	0	0	11737	1508	52	5		5	PDE4DIP	1	145004675	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	24441182	145004675	104245946	20	45806											
NBPF10	100132406	broad.mit.edu	37	chr1	145295990	145295990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggcctcatttctgtacGtggctttgtatctagtggcc	10	11	3	0	rs116275225	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145295990	A	A	145295990	1	1	35	0	1	0	0	0	0	0	0	0	10287	1160	40	4		4	NBPF10	1	145295990	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	291315	145295990	103954631	21	45807											
TCHH	7062	broad.mit.edu	37	chr1	152079858	152079858	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtcaagatattggcaacatCacttaagggcggtattgaga	11	6	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152079858	A	A	152079858	1	1	35	0	1	0	0	0	0	0	0	0	15822	841	29	3		3	TCHH	1	152079858	3'UTR	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6783868	152079858	97170763	22	45808											
JTB	10899	broad.mit.edu	37	chr1	153949136	153949136	+	Intron	DEL	A	-	-													aagtgtttgcttagatgtttAaaaaaaaaaagggtagagaa							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153949136	-	-	153949136	6	5	35	0	1	1	0	1	0	0	0	0	8037	377	13	0		0	JTB	1	153949136	Intron	DEL	A	TCGA-17-Z000-01A-01W-0746-08	1869278	153949136	95301485	23	45809											
SLC9A11	284525	broad.mit.edu	37	chr1	173523802	173523802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcatgagaaatgtcccCatgacacccaacaataacct	5	13	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173523802	A	A	173523802	1	1	35	0	1	0	0	0	0	0	0	0	14825	609	21	2		2	SLC9A11	1	173523802	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	19574666	173523802	75726819	24	45810											
ASTN1	460	broad.mit.edu	37	chr1	176952968	176952968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcgctgaccttggacttGggcacagtggttgggcagcc	15	11	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176952968	T	T	176952968	1	4	35	0	1	0	0	0	0	0	0	0	1068	1363	47	2		2	ASTN1	1	176952968	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3429166	176952968	72297653	25	45811											
CACNA1E	777	broad.mit.edu	37	chr1	181498289	181498289	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccctgtgtcccagctgttCcagctgtggctgaaaggagc	13	12	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181498289	T	T	181498289	1	4	35	0	1	0	0	0	0	0	0	0	2568	870	30	4		4	CACNA1E	1	181498289	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	4545321	181498289	67752332	26	45812											
HMCN1	83872	broad.mit.edu	37	chr1	186050516	186050516	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaatttctatctaatggacGaattctgcaggtaaaagtaa	7	5	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186050516	A	A	186050516	3	1	35	1	0	0	0	0	1	0	0	0	7287	1058	37	4	8999	4	HMCN1	1	186050516	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	4552227	186050516	63200105	27	45813											
CRB1	23418	broad.mit.edu	37	chr1	197404462	197404462	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggaggaaactgtgaagacAtctatagctcttatcattgc	9	7	3	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197404462	T	T	197404462	3	4	35	1	0	0	0	0	1	0	0	0	3880	217	8	5	3503	5	CRB1	1	197404462	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	11353946	197404462	51846159	28	45814											
CACNA1S	779	broad.mit.edu	37	chr1	201047024	201047024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacttggtgatcttgaagatCctcaggaggcggatgcagcg	14	9	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201047024	A	A	201047024	3	1	35	1	0	0	0	0	1	0	0	0	2573	854	30	3	4155	3	CACNA1S	1	201047024	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	3642562	201047024	48203597	29	45815											
PLEKHA6	22874	broad.mit.edu	37	chr1	204274963	204274963	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcctaataaatggctgtgtGattgccttctaaattccatt	7	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204274963	T	T	204274963	1	4	35	0	1	0	0	0	0	0	0	0	12155	1305	45	3		3	PLEKHA6	1	204274963	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3227939	204274963	44975658	30	45816											
SRGAP2	23380	broad.mit.edu	37	chr1	206577787	206577787	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagaggctaaaggacgaaCggtaacaaggtgacaggagc	14	7	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206577787	T	T	206577787	1	4	35	0	1	0	0	0	0	0	0	0	15264	551	19	4		4	SRGAP2	1	206577787	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2302824	206577787	42672834	31	45817											
RPS6KC1	26750	broad.mit.edu	37	chr1	213414788	213414788	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaggtagagtttaaagctCaggacaccattagcaggggc	13	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213414788	T	T	213414788	4	4	35	1	0	0	0	0	0	1	0	0	13769	827	29	4	2011	4	RPS6KC1	1	213414788	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6837001	213414788	35835833	32	45818											
ESRRG	2104	broad.mit.edu	37	chr1	217243225	217243225	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataatgttgtaaatcacaAccctcacatcattccttaaa	2	10	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217243225	G	G	217243225	1	3	35	0	1	0	0	0	0	0	0	0	5304	58	2	5		5	ESRRG	1	217243225	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	3828437	217243225	32007396	33	45819											
RYR2	6262	broad.mit.edu	37	chr1	237895272	237895272	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttttattcttcattgctgtCcttcacagtgcttttggatt	6	9	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237895272	A	A	237895272	1	1	35	0	1	0	0	0	0	0	0	0	13880	870	30	3		3	RYR2	1	237895272	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	20652047	237895272	11355349	34	45820											
RYR2	6262	broad.mit.edu	37	chr1	237994912	237994912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaagaaatgatagagaaGctctaaatatcagaacaaaa	7	5	2	5			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237994912	T	T	237994912	1	4	35	0	1	0	0	0	0	0	0	0	13880	986	34	3		3	RYR2	1	237994912	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	99640	237994912	11255709	35	45821											
RGS7	6000	broad.mit.edu	37	chr1	241519205	241519205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcattcacagcacccaccCcacatggcgcgttcttacaa	5	17	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241519205	A	A	241519205	1	1	35	0	1	0	0	0	0	0	0	0	13419	638	22	2		2	RGS7	1	241519205	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	3524293	241519205	7731416	36	45822											
OR2L2	26246	broad.mit.edu	37	chr1	248201629	248201629	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggggctgttcccacaatcAagaattggccttttcgtatt	9	9	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248201629	T	T	248201629	2	4	35	1	0	0	0	0	0	0	0	1	11101	117	5	5		5	OR2L2	1	248201629	Silent	SNP	A	TCGA-17-Z000-01A-01W-0746-08	6682424	248201629	1048992	37	45823											
OR14I1	401994	broad.mit.edu	37	chr1	248845530	248845530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagcagaaacagcccggCgtgcagcacctgcagctccc	10	16	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248845530	A	A	248845530	3	1	35	1	0	0	0	0	1	0	0	0	11041	768	27	3	863	3	OR14I1	1	248845530	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	643901	248845530	405091	38	45824											
FSHR	2492	broad.mit.edu	37	chr2	49267986	49267986	+	Intron	DEL	A	-	-													actcaaggggatgtgctgagAagcagtgcaggatttcctga					rs66461628		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49267986	-	-	49267986	6	5	35	0	1	1	0	1	0	0	0	0	6133	261	9	0		0	FSHR	2	49267986	Intron	DEL	A	TCGA-17-Z000-01A-01W-0746-08		49267986	193931387	39	45825											
ANKRD36B	57730	broad.mit.edu	37	chr2	98190023	98190023	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagttcatatggaaccaAaaaagagcccacatcaccaa	5	10	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98190023	G	G	98190023	1	3	35	0	1	0	0	0	0	0	0	0	666	29	1	5		5	ANKRD36B	2	98190023	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	48922037	98190023	145009350	40	45826											
REV1	51455	broad.mit.edu	37	chr2	100035415	100035415	+	Intron	DEL	A	-	-													ggagaatattagaacctattAaaaaaaaaagtcatccaaga							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100035415	-	-	100035415	6	5	35	0	1	1	0	1	0	0	0	0	13347	377	13	0		0	REV1	2	100035415	Intron	DEL	A	TCGA-17-Z000-01A-01W-0746-08	1845392	100035415	143163958	41	45827											
GLI2	2736	broad.mit.edu	37	chr2	121685258	121685258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccaaccacccccgagccCacatcaccacttataaggct	4	19	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121685258	A	A	121685258	1	1	35	0	1	0	0	0	0	0	0	0	6502	609	21	2		2	GLI2	2	121685258	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	21649843	121685258	121514115	42	45828											
BIN1	274	broad.mit.edu	37	chr2	127818195	127818195	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctttctgcgcagccgCgaaaacagtttacttttctt	6	11	4	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127818195	T	T	127818195	1	4	35	0	1	0	0	0	0	0	0	0	1438	755	27	4		4	BIN1	2	127818195	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6132937	127818195	115381178	43	45829											
THSD7B	80731	broad.mit.edu	37	chr2	138314218	138314218	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaactaatgagcaaaatAaccagctaacatcataatga	4	9	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138314218	C	C	138314218	1	2	35	0	1	0	0	0	0	0	0	0	16003	377	13	5		5	THSD7B	2	138314218	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	10496023	138314218	104885155	44	45830											
LRP1B	53353	broad.mit.edu	37	chr2	141115788	141115788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactactatgaaaaacatgGgtttacaatcctttatctga	5	7	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141115788	T	T	141115788	1	4	35	0	1	0	0	0	0	0	0	0	9042	1247	43	2		2	LRP1B	2	141115788	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2801570	141115788	102083585	45	45831											
LRP1B	53353	broad.mit.edu	37	chr2	141795475	141795478	+	Intron	DEL	ACAC	-	-													acacacacactcacatacaaAcacacacacacacatccata					rs139680637		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141795478	-	-	141795475	6	5	35	0	1	1	0	1	0	0	0	0	9042	58	2	0		0	LRP1B	2	141795475	Intron	DEL	ACAC	TCGA-17-Z000-01A-01W-0746-08	679687	141795475	101403898	46	45832											
ARHGAP15	55843	broad.mit.edu	37	chr2	144162338	144162338	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggaagatgagtgcctcatCaggcaacagcattaaggaaa	11	7	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144162338	G	G	144162338	1	3	35	0	1	0	0	0	0	0	0	0	868	841	29	4		4	ARHGAP15	2	144162338	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2366863	144162338	99037035	47	45833											
NEB	4703	broad.mit.edu	37	chr2	152520401	152520401	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagaagaaattatggtgaTgaaaatggtaaaagagaaca	11	2	0	5			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152520401	A	A	152520401	1	1	35	0	1	0	0	0	0	0	0	0	10397	1479	51	5		5	NEB	2	152520401	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	8358063	152520401	90678972	48	45834											
SCN2A	6326	broad.mit.edu	37	chr2	166142355	166142355	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaaattgatgctagcaggtCagtgtattgaaacttggcat	10	6	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166142355	A	A	166142355	1	1	35	0	1	0	0	0	0	0	0	0	14029	841	29	3		3	SCN2A	2	166142355	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	13621954	166142355	77057018	49	45835											
LRP2	4036	broad.mit.edu	37	chr2	170012818	170012818	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgttttccagggcggtcactCatagacgtgaagccatcagc	11	12	3	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170012818	G	G	170012818	3	3	35	1	0	0	0	0	1	0	0	0	9043	826	29	4	1910	4	LRP2	2	170012818	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	3870463	170012818	73186555	50	45836											
COL5A2	1290	broad.mit.edu	37	chr2	189914110	189914110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaggaccattggagcctGggggccccacaggtccaggt	14	13	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189914110	T	T	189914110	3	4	35	1	0	0	0	0	1	0	0	0	3729	1348	47	2	1433	2	COL5A2	2	189914110	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	19901292	189914110	53285263	51	45837											
SDPR	8436	broad.mit.edu	37	chr2	192701434	192701434	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacacgctggcagggatctCattttcctcctgaaaagacg	9	11	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192701434	T	T	192701434	3	4	35	1	0	0	0	0	1	0	0	0	14083	835	29	4	788	4	SDPR	2	192701434	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2787324	192701434	50497939	52	45838											
FN1	2335	broad.mit.edu	37	chr2	216273069	216273069	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctgctccccatcctcagAtatctgatagacatttacaa	4	13	3	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216273069	G	G	216273069	3	3	35	1	0	0	0	0	1	0	0	0	6020	333	12	5	5177	5	FN1	2	216273069	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	23571635	216273069	26926304	53	45839											
SLC23A3	151295	broad.mit.edu	37	chr2	220034256	220034256	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctcacctgctgcccatccAagtttgcaggatggtagaca	9	13	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220034256	C	C	220034256	3	2	35	1	0	0	0	0	1	0	0	0	14578	130	5	5	1593	5	SLC23A3	2	220034256	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	3761187	220034256	23165117	54	45840											
DNER	92737	broad.mit.edu	37	chr2	230272210	230272210	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtatacacacgtgcccactCatgattttagattgttgtaa	7	8	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230272210	G	G	230272210	1	3	35	0	1	0	0	0	0	0	0	0	4707	841	29	4		4	DNER	2	230272210	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	10237954	230272210	12927163	55	45841											
ARMC9	80210	broad.mit.edu	37	chr2	232127155	232127155	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccagccagggccttcaattCtagggaatgatcttagcaga	10	11	3	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232127155	T	T	232127155	1	4	35	0	1	0	0	0	0	0	0	0	962	928	32	4		4	ARMC9	2	232127155	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1854945	232127155	11072218	56	45842											
C3orf32	51066	broad.mit.edu	37	chr3	8689861	8689861	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccgtaagatagatattgttCtccttatagacgagacaaca	7	8	1	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8689861	G	G	8689861	1	3	35	0	1	0	0	0	0	0	0	0	2244	928	32	4		4	C3orf32	3	8689861	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08		8689861	189332569	57	45843											
LSM3	27258	broad.mit.edu	37	chr3	14239533	14239533	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtttttttttctcttcTagtcaacgaaacggaatatt	5	7	4	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14239533	C	C	14239533	1	2	35	0	1	0	0	0	0	0	0	0	9144	1537	53	5		5	LSM3	3	14239533	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	5549672	14239533	183782897	58	45844											
NR2C2	7182	broad.mit.edu	37	chr3	15057759	15057759	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtctgtggcgacaaagcctCcggtatgtagttccaggtta	13	9	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15057759	T	T	15057759	3	4	35	1	0	0	0	0	1	0	0	0	10718	855	30	4	445	4	NR2C2	3	15057759	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	818226	15057759	182964671	59	45845											
ANKRD28	23243	broad.mit.edu	37	chr3	15755258	15755258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaaactaatagatacagCaattttaactagatttcatt	3	6	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15755258	A	A	15755258	1	1	35	0	1	0	0	0	0	0	0	0	656	725	25	3		3	ANKRD28	3	15755258	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	697499	15755258	182267172	60	45846											
UBE2E1	7324	broad.mit.edu	37	chr3	23885226	23885227	+	Intron	INS	-	T	T													ctgtgtggcagtttggacaaINStgacaatccaaatgaccctc					rs146105443	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23885227	T	T	23885226	6	5	35	0	1	1	1	0	0	0	0	0	16978	116	4	0		0	UBE2E1	3	23885226	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	8129968	23885226	174137204	61	45847											
RBMS3	27303	broad.mit.edu	37	chr3	29939079	29939079	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaattctcatacactttaatCacatcttaatgtaataatac	1	8	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29939079	T	T	29939079	1	4	35	0	1	0	0	0	0	0	0	0	13258	841	29	4		4	RBMS3	3	29939079	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6053853	29939079	168083351	62	45848											
STT3B	201595	broad.mit.edu	37	chr3	31656612	31656612	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatagcatatagcactttctAcattgtgggtttaatattat	6	5	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31656612	G	G	31656612	3	3	35	1	0	0	0	0	1	0	0	0	15452	391	14	5	915	5	STT3B	3	31656612	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	1717533	31656612	166365818	63	45849											
OSBPL10	114884	broad.mit.edu	37	chr3	31720735	31720735	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgaggtccacattattgaAaattgcaacctccctgcccc	7	14	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31720735	C	C	31720735	1	2	35	0	1	0	0	0	0	0	0	0	11369	29	1	5		5	OSBPL10	3	31720735	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	64123	31720735	166301695	64	45850											
SUSD5	26032	broad.mit.edu	37	chr3	33194089	33194089	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccctcccaggtgctccagaGacacttctcagcctataaaa	7	15	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33194089	C	C	33194089	1	2	35	0	1	0	0	0	0	0	0	0	15529	957	33	4		4	SUSD5	3	33194089	3'UTR	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1473354	33194089	164828341	65	45851											
TRANK1	9881	broad.mit.edu	37	chr3	36899467	36899467	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtcctggacattggggttGaggtagtcgaattcagtggg	16	6	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36899467	C	C	36899467	1	2	35	0	1	0	0	0	0	0	0	0	16578	1277	45	4		4	TRANK1	3	36899467	5'UTR	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3705378	36899467	161122963	66	45852											
GOLGA4	2803	broad.mit.edu	37	chr3	37317715	37317715	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaattgaagaagctatatatCaagaaataaggaatacagac	7	4	1	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37317715	A	A	37317715	1	1	35	0	1	0	0	0	0	0	0	0	6619	841	29	3		3	GOLGA4	3	37317715	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	418248	37317715	160704715	67	45853											
SCN10A	6336	broad.mit.edu	37	chr3	38770107	38770107	+	Frame_Shift_Del	DEL	C	-	-													ttggccaacttccatgcaggCccacatgttctcaatccact							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38770107	-	-	38770107	7	5	35	1	0	1	0	1	0	0	0	0	14025	739	26	0	3356	0	SCN10A	3	38770107	Frame_Shift_Del	DEL	C	TCGA-17-Z000-01A-01W-0746-08	1452392	38770107	159252323	68	45854											
ABHD5	51099	broad.mit.edu	37	chr3	43759816	43759816	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattgttattttttaatcaCgtgttttatttaaatacagt	4	3	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43759816	T	T	43759816	1	4	35	0	1	0	0	0	0	0	0	0	85	551	19	4		4	ABHD5	3	43759816	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	4989709	43759816	154262614	69	45855											
BSN	8927	broad.mit.edu	37	chr3	49689543	49689543	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagattctcgagatgagcGccgaggaagacaacctggag	15	9	1	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49689543	A	A	49689543	3	1	35	1	0	0	0	0	1	0	0	0	1539	1087	38	4	2572	4	BSN	3	49689543	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	5929727	49689543	148332887	70	45856											
TLR9	54106	broad.mit.edu	37	chr3	52257315	52257315	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtaattgaaggacaggttAagcttgcgcagctgtgttag	14	5	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52257315	C	C	52257315	2	2	35	1	0	0	0	0	0	0	0	1	16081	349	13	5		5	TLR9	3	52257315	Silent	SNP	A	TCGA-17-Z000-01A-01W-0746-08	2567772	52257315	145765115	71	45857											
COL8A1	1295	broad.mit.edu	37	chr3	99509625	99509625	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctggtgcctactatgggatCaagccgctgccacctcaaat	10	13	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99509625	G	G	99509625	3	3	35	1	0	0	0	0	1	0	0	0	3737	816	29	4	101	4	COL8A1	3	99509625	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	47252310	99509625	98512805	72	45858											
ZPLD1	131368	broad.mit.edu	37	chr3	102187940	102187940	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcttgcactgcgttacCaagctctgcagagcagatga	10	11	3	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102187940	A	A	102187940	2	1	35	1	0	0	0	0	0	0	0	1	18350	581	21	2		2	ZPLD1	3	102187940	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2678315	102187940	95834490	73	45859											
C3orf52	79669	broad.mit.edu	37	chr3	111831642	111831642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttttgtgatgaatctatGgaagaggattcttataggac	10	4	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111831642	T	T	111831642	1	4	35	0	1	0	0	0	0	0	0	0	2254	1363	47	2		2	C3orf52	3	111831642	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	9643702	111831642	86190788	74	45860											
ADCY5	111	broad.mit.edu	37	chr3	123033020	123033020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgggcccctgggtaggGcccctagggctgagagaagc	16	10	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123033020	T	T	123033020	1	4	35	0	1	0	0	0	0	0	0	0	297	1218	42	3		3	ADCY5	3	123033020	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	11201378	123033020	74989410	75	45861											
MYLK	4638	broad.mit.edu	37	chr3	123345716	123345716	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccggtccttggagagtttCttggcctccatgttcttggt	11	10	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123345716	A	A	123345716	3	1	35	1	0	0	0	0	1	0	0	0	10150	912	32	3	573	3	MYLK	3	123345716	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	312696	123345716	74676714	76	45862											
CEP63	80254	broad.mit.edu	37	chr3	134276927	134276927	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattttccaaccagcagtatCacagatcacaggtattcttg	6	10	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134276927	T	T	134276927	1	4	35	0	1	0	0	0	0	0	0	0	3287	841	29	4		4	CEP63	3	134276927	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	10931211	134276927	63745503	77	45863											
PFN2	5217	broad.mit.edu	37	chr3	149686355	149686355	+	Intron	DEL	G	-	-													tggctgccccccaccaaaaaGaaaaaaaaaaaacacacaca							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149686355	-	-	149686355	6	5	35	0	1	1	0	1	0	0	0	0	11863	957	33	0		0	PFN2	3	149686355	Intron	DEL	G	TCGA-17-Z000-01A-01W-0746-08	15409428	149686355	48336075	78	45864											
SI	6476	broad.mit.edu	37	chr3	164730666	164730666	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgataatttaaaatggccatCtatttttaaagaaaagcatt	5	5	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164730666	A	A	164730666	1	1	35	0	1	0	0	0	0	0	0	0	14410	928	32	3		3	SI	3	164730666	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	15044311	164730666	33291764	79	45865											
CCDC39	339829	broad.mit.edu	37	chr3	180378511	180378511	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgagtggctttaaatatGccattctaatttccaaagag	7	6	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180378511	T	T	180378511	2	4	35	1	0	0	0	0	0	0	0	1	2838	1306	46	3		3	CCDC39	3	180378511	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	15647845	180378511	17643919	80	45866											
ATP11B	23200	broad.mit.edu	37	chr3	182635879	182635879	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactctctccacaatggactCatctacttgttaaaggggca	8	11	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182635879	G	G	182635879	4	3	35	1	0	0	0	0	0	1	0	0	1124	838	29	4	3639	4	ATP11B	3	182635879	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2257368	182635879	15386551	81	45867											
LAMP3	27074	broad.mit.edu	37	chr3	182871711	182871711	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcttttgtgcagtgctatcGataaagttgctggaagggtg	14	5	0	0	rs115806403	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182871711	C	C	182871711	3	2	35	1	0	0	0	0	1	0	0	0	8691	1059	37	4	752	4	LAMP3	3	182871711	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	235832	182871711	15150719	82	45868											
ATP13A4	84239	broad.mit.edu	37	chr3	193185436	193185436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcataaacatagttcttaCttctaagaggtctgtagttt	7	6	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193185436	A	A	193185436	1	1	35	0	1	0	0	0	0	0	0	0	1130	580	20	3		3	ATP13A4	3	193185436	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	10313725	193185436	4836994	83	45869											
ZNF595	152687	broad.mit.edu	37	chr4	55040	55040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctcccgcctcggcctgcCaaagtgctgggattacaggc	12	16	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55040	A	A	55040	1	1	35	0	1	0	0	0	0	0	0	0	18152	609	21	2		2	ZNF595	4	55040	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08		55040	191099236	84	45870											
JAKMIP1	152789	broad.mit.edu	37	chr4	6068395	6068395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttctccacctctcatgcCtgccctccctgggagaaacc	7	18	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6068395	A	A	6068395	1	1	35	0	1	0	0	0	0	0	0	0	8010	696	24	2		2	JAKMIP1	4	6068395	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6013355	6068395	185085881	85	45871											
SLIT2	9353	broad.mit.edu	37	chr4	20533720	20533720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttttttatttctgtagcAttttttgggtgttcatttca	6	4	3	0	rs75154810		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20533720	T	T	20533720	1	4	35	0	1	0	0	0	0	0	0	0	14854	232	8	5		5	SLIT2	4	20533720	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	14465325	20533720	170620556	86	45872											
SLC34A2	10568	broad.mit.edu	37	chr4	25676047	25676047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgattggtgagttacaccCtggcttctccctctggccac	9	15	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25676047	A	A	25676047	1	1	35	0	1	0	0	0	0	0	0	0	14682	696	24	2		2	SLC34A2	4	25676047	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	5142327	25676047	165478229	87	45873											
LPHN3	23284	broad.mit.edu	37	chr4	62778676	62778676	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaggaacacagactgagaAggaggtgcaacttgaggtgt	15	5	0	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62778676	T	T	62778676	1	4	35	0	1	0	0	0	0	0	0	0	9004	87	3	5		5	LPHN3	4	62778676	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	37102629	62778676	128375600	88	45874											
UGT2A1	10941	broad.mit.edu	37	chr4	70504819	70504819	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgatgctggagagaacctCaatgtgtacataaatggaat	11	5	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70504819	A	A	70504819	1	1	35	0	1	0	0	0	0	0	0	0	17079	825	29	3		3	UGT2A1	4	70504819	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	7726143	70504819	120649457	89	45875											
C4orf40	401137	broad.mit.edu	37	chr4	71024571	71024571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagctgagcctgctacagCcaagcctgctgccccagaac	9	17	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71024571	A	A	71024571	3	1	35	1	0	0	0	0	1	0	0	0	2292	739	26	3	612	3	C4orf40	4	71024571	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	519752	71024571	120129705	90	45876											
PPEF2	5470	broad.mit.edu	37	chr4	76812942	76812942	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagttggcctcactttaggaGcacccgagccctgctgccca	10	16	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76812942	C	C	76812942	1	2	35	0	1	0	0	0	0	0	0	0	12404	986	34	4		4	PPEF2	4	76812942	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	5788371	76812942	114341334	91	45877											
CNOT6L	246175	broad.mit.edu	37	chr4	78652605	78652605	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaatgttatcttttgtcatCactctgttcagcatagcttc	5	11	5	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78652605	A	A	78652605	2	1	35	1	0	0	0	0	0	0	0	1	3655	813	29	3		3	CNOT6L	4	78652605	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1839663	78652605	112501671	92	45878											
ANTXR2	118429	broad.mit.edu	37	chr4	80993620	80993620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagggctgctcctgggcgCgcagcagccccccgggaccg	17	16	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80993620	A	A	80993620	3	1	35	1	0	0	0	0	1	0	0	0	712	768	27	3	1481	3	ANTXR2	4	80993620	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2341015	80993620	110160656	93	45879											
TMSL3	7117	broad.mit.edu	37	chr4	91760222	91760222	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcggagcgaggcgcgcgaGtacgagcgaagtctggtctg	18	9	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91760222	A	A	91760222	1	1	35	0	1	0	0	0	0	0	0	0	16382	1044	36	4		4	TMSL3	4	91760222	5'UTR	SNP	G	TCGA-17-Z000-01A-01W-0746-08	10766602	91760222	99394054	94	45880											
EIF4E	1977	broad.mit.edu	37	chr4	99809080	99809080	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agccaggcattaaattactaGacaactggatatggttgtac	9	7	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99809080	C	C	99809080	3	2	35	1	0	0	0	0	1	0	0	0	5070	942	33	4	521	4	EIF4E	4	99809080	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	8048858	99809080	91345196	95	45881											
GYPE	2996	broad.mit.edu	37	chr4	144794038	144794038	+	Intron	DEL	A	-	-													gagagagtgggagagggttgAagggggcaggccaggtgagc					rs59463577		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144794038	-	-	144794038	6	5	35	0	1	1	0	1	0	0	0	0	6976	261	9	0		0	GYPE	4	144794038	Intron	DEL	A	TCGA-17-Z000-01A-01W-0746-08	44984958	144794038	46360238	96	45882											
KIAA0922	23240	broad.mit.edu	37	chr4	154539652	154539652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaaacccacCaaaaaaacctccaaataact	0	10	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154539652	A	A	154539652	1	1	35	0	1	0	0	0	0	0	0	0	8271	609	21	2		2	KIAA0922	4	154539652	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	9745614	154539652	36614624	97	45883											
SC4MOL	6307	broad.mit.edu	37	chr4	166251927	166251928	+	Intron	INS	-	A	A													agtgcagtcacagcttactgINSaaacctccacctcctcattt							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166251928	A	A	166251927	6	5	35	0	1	1	1	0	0	0	0	0	13977	1305	45	0		0	SC4MOL	4	166251927	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	11712275	166251927	24902349	98	45884											
FRG1	2483	broad.mit.edu	37	chr4	190871353	190871353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctttggagcaatgtccGtgtatatcctttgcccagtt	8	10	2	0	rs143398018		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190871353	A	A	190871353	1	1	35	0	1	0	0	0	0	0	0	0	6106	1160	40	4		4	FRG1	4	190871353	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	24619426	190871353	282923	99	45885											
C5orf49	134121	broad.mit.edu	37	chr5	7832223	7832223	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgcatccatcagcctgggtCctgggagctttttctgcctg	12	12	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7832223	A	A	7832223	1	1	35	0	1	0	0	0	0	0	0	0	2330	870	30	3		3	C5orf49	5	7832223	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08		7832223	173083037	100	45886											
FBXL7	23194	broad.mit.edu	37	chr5	15927950	15927950	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttttgctgcctccctgggGctctgctgaggccatcatga	12	13	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15927950	A	A	15927950	1	1	35	0	1	0	0	0	0	0	0	0	5781	1218	42	4		4	FBXL7	5	15927950	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	8095727	15927950	164987310	101	45887											
MYO10	4651	broad.mit.edu	37	chr5	16769271	16769271	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcagcctcgacacttcCcgaacttcctccttgctgaa	7	16	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16769271	A	A	16769271	2	1	35	1	0	0	0	0	0	0	0	1	10156	610	22	2		2	MYO10	5	16769271	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	841321	16769271	164145989	102	45888											
CDH12	1010	broad.mit.edu	37	chr5	21883028	21883028	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacacaaatgaagaatctgGggatggcactaccactgcta	9	9	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21883028	C	C	21883028	1	2	35	0	1	0	0	0	0	0	0	0	3128	1247	43	4		4	CDH12	5	21883028	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	5113757	21883028	159032232	103	45889											
ADAMTS12	81792	broad.mit.edu	37	chr5	33614583	33614583	+	Intron	DEL	G	-	-													agtcatctaaaattagtaatGggagcatgcattggaataaa							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33614583	-	-	33614583	6	5	35	0	1	1	0	1	0	0	0	0	257	1363	47	0		0	ADAMTS12	5	33614583	Intron	DEL	G	TCGA-17-Z000-01A-01W-0746-08	11731555	33614583	147300677	104	45890											
ADAMTS12	81792	broad.mit.edu	37	chr5	33684007	33684008	+	Missense_Mutation	DNP	CC	AA	AA													aggactccacattctcactcCcatggtattcaatcatcttt							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	33684008	AA	AA	33684007	3	1	35	1	0	0	0	0	1	0	0	0	257	623	22	2	4080	2	ADAMTS12	5	33684007	Missense_Mutation	DNP	CC	TCGA-17-Z000-01A-01W-0746-08	69424	33684007	147231253	105	45891											
PLCXD3	345557	broad.mit.edu	37	chr5	41313927	41313927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagatactatttttcaagCtctacaattctcagtcttcc	4	11	4	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41313927	A	A	41313927	1	1	35	0	1	0	0	0	0	0	0	0	12138	812	28	3		3	PLCXD3	5	41313927	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	7629920	41313927	139601333	106	45892											
ARL15	54622	broad.mit.edu	37	chr5	53522601	53522601	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgactctttgttcttcaactCaacacatctgatacggtgtg	7	10	5	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53522601	G	G	53522601	1	3	35	0	1	0	0	0	0	0	0	0	933	841	29	4		4	ARL15	5	53522601	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	12208674	53522601	127392659	107	45893											
IL31RA	133396	broad.mit.edu	37	chr5	55204061	55204061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcctggagtgcggttcaGtgattatcatttatccctct	8	10	4	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55204061	T	T	55204061	1	4	35	0	1	0	0	0	0	0	0	0	7761	1044	36	3		3	IL31RA	5	55204061	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1681460	55204061	125711199	108	45894											
NLN	57486	broad.mit.edu	37	chr5	65077205	65077205	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgttgtatccctgaaaCcagaagaaggatggaaatgg	12	5	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65077205	G	G	65077205	3	3	35	1	0	0	0	0	1	0	0	0	10562	507	18	4	801	4	NLN	5	65077205	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	9873144	65077205	115838055	109	45895											
DMGDH	29958	broad.mit.edu	37	chr5	78349866	78349866	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcctatcttgtaagttacCcaaattccaaaattaatcat	3	10	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78349866	G	G	78349866	1	3	35	0	1	0	0	0	0	0	0	0	4621	638	22	4		4	DMGDH	5	78349866	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	13272661	78349866	102565394	110	45896											
PCDHA4	56144	broad.mit.edu	37	chr5	140188367	140188367	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaggagctagagctgctgcAgtttcaggtgaccgctcgcg	15	11	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140188367	T	T	140188367	3	4	35	1	0	0	0	0	1	0	0	0	11620	188	7	5	1597	5	PCDHA4	5	140188367	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	61838501	140188367	40726893	111	45897											
KIF4B	285643	broad.mit.edu	37	chr5	154393718	154393718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacctattcaatgggagGtgcatacactgcggagcagg	12	8	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154393718	A	A	154393718	3	1	35	1	0	0	0	0	1	0	0	0	8374	1261	44	4	301	4	KIF4B	5	154393718	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	14205351	154393718	26521542	112	45898											
ATP6V0E1	8992	broad.mit.edu	37	chr5	172447277	172447277	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggcccaactcaaccctctCtttggaccgcaattgaaaaa	6	14	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172447277	G	G	172447277	2	3	35	1	0	0	0	0	0	0	0	1	1179	900	32	4		4	ATP6V0E1	5	172447277	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	18053559	172447277	8467983	113	45899											
NSD1	64324	broad.mit.edu	37	chr5	176709559	176709559	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaacatgatatcactaatTtctatatgctcaccctagac	4	10	3	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176709559	A	A	176709559	3	1	35	1	0	0	0	0	1	0	0	0	10764	1841	64	5	6056	5	NSD1	5	176709559	Missense_Mutation	SNP	T	TCGA-17-Z000-01A-01W-0746-08	4262282	176709559	4205701	114	45900											
LMAN2	10960	broad.mit.edu	37	chr5	176778161	176778161	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacagtacgcctatcctcttGagaaccactcacctggtggt	8	14	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176778161	C	C	176778161	1	2	35	0	1	0	0	0	0	0	0	0	8912	1305	45	4		4	LMAN2	5	176778161	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	68602	176778161	4137099	115	45901											
LMAN2	10960	broad.mit.edu	37	chr5	176778186	176778186	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccactcacctggtggttccaGatagagccctctttgctgcg	10	14	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176778186	C	C	176778186	3	2	35	1	0	0	0	0	1	0	0	0	8912	932	33	4	795	4	LMAN2	5	176778186	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	25	176778186	4137074	116	45902											
GCM2	9247	broad.mit.edu	37	chr6	10877357	10877357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaggtcaccctctccctGgccccatgtcctcactctgc	6	20	4	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10877357	T	T	10877357	1	4	35	0	1	0	0	0	0	0	0	0	6360	1363	47	2		2	GCM2	6	10877357	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08		10877357	160237710	117	45903											
SYCP2L	221711	broad.mit.edu	37	chr6	10961861	10961861	+	Intron	DEL	G	-	-													taatgctttagctagagaatGggcagttggtgacggtaaaa							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10961861	-	-	10961861	6	5	35	0	1	1	0	1	0	0	0	0	15552	1363	47	0		0	SYCP2L	6	10961861	Intron	DEL	G	TCGA-17-Z000-01A-01W-0746-08	84504	10961861	160153206	118	45904											
E2F3	1871	broad.mit.edu	37	chr6	20490758	20490758	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcccttcctaccttcttcctCcaagagagtatcatgaagta	5	13	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20490758	G	G	20490758	1	3	35	0	1	0	0	0	0	0	0	0	4908	870	30	4		4	E2F3	6	20490758	3'UTR	SNP	C	TCGA-17-Z000-01A-01W-0746-08	9528897	20490758	150624309	119	45905											
ZFP57	346171	broad.mit.edu	37	chr6	29643051	29643051	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtctgaccaggctggacaGaggtacactaggagagcatc	13	9	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29643051	C	C	29643051	1	2	35	0	1	0	0	0	0	0	0	0	17777	957	33	4		4	ZFP57	6	29643051	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	9152293	29643051	141472016	120	45906											
MICB	4277	broad.mit.edu	37	chr6	31473363	31473363	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgaagttatttccaggaaGaagtttcacctgtgatttcc	9	7	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31473363	C	C	31473363	1	2	35	0	1	0	0	0	0	0	0	0	9668	957	33	4		4	MICB	6	31473363	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1830312	31473363	139641704	121	45907											
PPT2	9374	broad.mit.edu	37	chr6	32130755	32130755	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcaggggtccccaggaactCctcggtccagagaccaagtg	12	13	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32130755	A	A	32130755	1	1	35	0	1	0	0	0	0	0	0	0	12513	870	30	3		3	PPT2	6	32130755	3'UTR	SNP	C	TCGA-17-Z000-01A-01W-0746-08	657392	32130755	138984312	122	45908											
RPS18	6222	broad.mit.edu	37	chr6	33243778	33243778	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattatgcagaatccacgcCagtacaagatcccagactgg	8	13	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33243778	T	T	33243778	4	4	35	1	0	0	0	0	0	1	0	0	13739	595	21	4	240	4	RPS18	6	33243778	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1113023	33243778	137871289	123	45909											
MED20	9477	broad.mit.edu	37	chr6	41888852	41888852	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttccccaacacaaccttcTgtctcagaagggactccgga	8	14	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41888852	C	C	41888852	1	2	35	0	1	0	0	0	0	0	0	0	9531	1595	55	5		5	MED20	6	41888852	5'UTR	SNP	T	TCGA-17-Z000-01A-01W-0746-08	8645074	41888852	129226215	124	45910											
UBR2	23304	broad.mit.edu	37	chr6	42627405	42627405	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtattgcagccctgtggcttCagatatgacacttacagcac	9	11	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42627405	G	G	42627405	4	3	35	1	0	0	0	0	0	1	0	0	17028	838	29	4	3518	4	UBR2	6	42627405	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	738553	42627405	128487662	125	45911											
CNPY3	10695	broad.mit.edu	37	chr6	42902347	42902347	+	Intron	DEL	G	-	-													acaccaagtcgtaagtgaatGgggactcactggcctggcct							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42902347	-	-	42902347	6	5	35	0	1	1	0	1	0	0	0	0	3661	1363	47	0		0	CNPY3	6	42902347	Intron	DEL	G	TCGA-17-Z000-01A-01W-0746-08	274942	42902347	128212720	126	45912											
GNMT	27232	broad.mit.edu	37	chr6	42930898	42930898	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcattgatcatcgcaactaCgaccacatcctcagtacagg	7	13	3	1	rs147746130		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42930898	T	T	42930898	2	4	35	1	0	0	0	0	0	0	0	1	6604	547	19	4		4	GNMT	6	42930898	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	28551	42930898	128184169	127	45913											
TTBK1	84630	broad.mit.edu	37	chr6	43220499	43220499	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaagatcgggggcggggGctttggtgagatctacgagg	19	5	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43220499	A	A	43220499	3	1	35	1	0	0	0	0	1	0	0	0	16802	1203	42	4	137	4	TTBK1	6	43220499	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	289601	43220499	127894568	128	45914											
SLC35B2	347734	broad.mit.edu	37	chr6	44223913	44223913	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggaagaaacaaaaggGcatttcccccaaacacctca	7	11	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44223913	A	A	44223913	1	1	35	0	1	0	0	0	0	0	0	0	14690	1218	42	4		4	SLC35B2	6	44223913	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1003414	44223913	126891154	129	45915			1	43		4	4	710	G		8.643592e-08
SLC35B2	347734	broad.mit.edu	37	chr6	44223960	44223960	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggtgcagtgtgcccctggGaggaggacacgaaacacacc	15	11	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44223960	A	A	44223960	1	1	35	0	1	0	0	0	0	0	0	0	14690	1189	41	4		4	SLC35B2	6	44223960	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	47	44223960	126891107	130	45916			1	43		4	4	710	G		8.643592e-08
SLC35B2	347734	broad.mit.edu	37	chr6	44224130	44224130	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcctgccacatcggggtGgtctctgccgcctctgttcg	14	14	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44224130	A	A	44224130	2	1	35	1	0	0	0	0	0	0	0	1	14690	1335	47	4		4	SLC35B2	6	44224130	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	170	44224130	126890937	131	45917			1	43		4	4	710	G		8.643592e-08
SLC35B2	347734	broad.mit.edu	37	chr6	44224622	44224622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcccaccatctgtaaGgaaagcggacataaggatta	9	11	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44224622	A	A	44224622	1	1	35	0	1	0	0	0	0	0	0	0	14690	1015	35	4		4	SLC35B2	6	44224622	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	492	44224622	126890445	132	45918			1	43		4	4	710	G		8.643592e-08
GPR110	266977	broad.mit.edu	37	chr6	46968041	46968042	+	Intron	INS	-	A	A													tgcataatggcctgaaggggINSaaaaaaaaaggaaataatta					rs819499		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46968042	A	A	46968041	6	5	35	0	1	1	1	0	0	0	0	0	6692	1189	41	0		0	GPR110	6	46968041	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	2743419	46968041	124147026	133	45919											
GPR111	222611	broad.mit.edu	37	chr6	47645579	47645579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgattttccctttctagGctgcaagcaaaagcaaggag	9	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47645579	A	A	47645579	3	1	35	1	0	0	0	0	1	0	0	0	6693	1217	42	4	79	4	GPR111	6	47645579	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	677538	47645579	123469488	134	45920											
GFRAL	389400	broad.mit.edu	37	chr6	55223906	55223906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctttgtgtaagattttcCagcacatgcttcatagaaaa	6	7	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55223906	A	A	55223906	3	1	35	1	0	0	0	0	1	0	0	0	6415	595	21	2	944	2	GFRAL	6	55223906	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	7578327	55223906	115891161	135	45921											
PRIM2	5558	broad.mit.edu	37	chr6	57485672	57485673	+	Intron	INS	-	C	C													ctcagacacgcctagccccgINScccccacctgacagtccttc					rs151109620	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57485673	C	C	57485672	6	5	35	0	1	1	1	0	0	0	0	0	12597	1102	38	0		0	PRIM2	6	57485672	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	2261766	57485672	113629395	136	45922											
GPRC6A	222545	broad.mit.edu	37	chr6	117121855	117121856	+	Missense_Mutation	DNP	CT	AC	AC													gtcatgtgtccattgatctcCttccagagcacaacatcata							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	117121856	AC	AC	117121855	3	1	35	1	0	0	0	0	1	0	0	0	6794	680	24	2	1352	2	GPRC6A	6	117121855	Missense_Mutation	DNP	CT	TCGA-17-Z000-01A-01W-0746-08	59636183	117121855	53993212	137	45923											
RFX6	222546	broad.mit.edu	37	chr6	117216355	117216355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaaggttttctggaagCaagctaaagaatgaggtaag	11	3	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117216355	A	A	117216355	3	1	35	1	0	0	0	0	1	0	0	0	13375	709	25	3	679	3	RFX6	6	117216355	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	94500	117216355	53898712	138	45924											
TRDN	10345	broad.mit.edu	37	chr6	123709670	123709670	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttgcataaaacataccttCcttcttttcatccttcttag	2	11	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123709670	A	A	123709670	4	1	35	1	0	0	0	0	0	1	0	0	16592	864	30	3	1169	3	TRDN	6	123709670	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6493315	123709670	47405397	139	45925											
MED23	9439	broad.mit.edu	37	chr6	131943069	131943069	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcagagctcactgtattAggaattgtcaaaatcttctc	7	9	4	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131943069	T	T	131943069	2	4	35	1	0	0	0	0	0	0	0	1	9534	407	15	5		5	MED23	6	131943069	Silent	SNP	A	TCGA-17-Z000-01A-01W-0746-08	8233399	131943069	39171998	140	45926											
C6orf35	729515	broad.mit.edu	37	chr6	157731874	157731874	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acccggcctcatcatagtgtCccagtgtgcactcacctagc	8	16	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157731874	G	G	157731874	1	3	35	0	1	0	0	0	0	0	0	0	2386	870	30	4		4	C6orf35	6	157731874	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	25788805	157731874	13383193	141	45927											
PDE10A	10846	broad.mit.edu	37	chr6	165792718	165792718	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaaggtttagtgatccggtCtggtacatctcttccaactg	9	9	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165792718	A	A	165792718	3	1	35	1	0	0	0	0	1	0	0	0	11724	912	32	3	439	3	PDE10A	6	165792718	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	8060844	165792718	5322349	142	45928											
FRMD1	79981	broad.mit.edu	37	chr6	168461497	168461497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctggggctggaggacGgctccttctcatggagcccg	16	12	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168461497	T	T	168461497	3	4	35	1	0	0	0	0	1	0	0	0	6109	1116	39	1	375	1	FRMD1	6	168461497	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2668779	168461497	2653570	143	45929											
PRKAR1B	5575	broad.mit.edu	37	chr7	628279	628279	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatggtggtgatggtgatgGtggtgatggtggtgaggata	21	0	0	5			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	628279	A	A	628279	1	1	35	0	1	0	0	0	0	0	0	0	12610	1276	44	4		4	PRKAR1B	7	628279	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08		628279	158510384	144	45930											
HEATR2	54919	broad.mit.edu	37	chr7	803599	803599	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcagttcagtgtcatcGtcgcacagtcaggtgagccg	12	12	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	803599	A	A	803599	3	1	35	1	0	0	0	0	1	0	0	0	7095	1145	40	4	1801	4	HEATR2	7	803599	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	175320	803599	158335064	145	45931											
PAPOLB	56903	broad.mit.edu	37	chr7	4901105	4901105	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaaggcgtcaatatctgCgcctttcgtatgtactccta	8	12	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4901105	T	T	4901105	3	4	35	1	0	0	0	0	1	0	0	0	11524	768	27	4	1580	4	PAPOLB	7	4901105	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	4097506	4901105	154237558	146	45932											
EIF2AK1	27102	broad.mit.edu	37	chr7	6084286	6084286	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcaccttcacttcccGtaggacctagaaaagaaatg	8	12	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6084286	A	A	6084286	3	1	35	1	0	0	0	0	1	0	0	0	5036	1144	40	4	1291	4	EIF2AK1	7	6084286	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1183181	6084286	153054377	147	45933											
PHF14	9678	broad.mit.edu	37	chr7	11022852	11022852	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcttctctaaatcactctAcacattgtattaagtggctt	4	9	4	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11022852	G	G	11022852	1	3	35	0	1	0	0	0	0	0	0	0	11920	406	14	5		5	PHF14	7	11022852	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	4938566	11022852	148115811	148	45934											
TRIL	9865	broad.mit.edu	37	chr7	28997432	28997432	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccccagacggtggaagtcGaaggccgtgatgttggttat	15	8	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28997432	A	A	28997432	2	1	35	1	0	0	0	0	0	0	0	1	16609	1049	37	4		4	TRIL	7	28997432	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	17974580	28997432	130141231	149	45935											
FKBP9	11328	broad.mit.edu	37	chr7	33044973	33044973	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaactctaaacctggcatGaaccagatggtgccagggag	12	9	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33044973	A	A	33044973	1	1	35	0	1	0	0	0	0	0	0	0	5972	1305	45	4		4	FKBP9	7	33044973	3'UTR	SNP	G	TCGA-17-Z000-01A-01W-0746-08	4047541	33044973	126093690	150	45936											
RP9	6100	broad.mit.edu	37	chr7	33134785	33134785	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgctttctctgactgCatcttcctctgttccttggt	7	14	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33134785	T	T	33134785	1	4	35	0	1	0	0	0	0	0	0	0	13646	725	25	4		4	RP9	7	33134785	3'UTR	SNP	C	TCGA-17-Z000-01A-01W-0746-08	89812	33134785	126003878	151	45937											
HECW1	23072	broad.mit.edu	37	chr7	43503272	43503272	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaaaggtatcaaaacattCagcgaaccattgcaacagag	8	9	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43503272	A	A	43503272	3	1	35	1	0	0	0	0	1	0	0	0	7109	827	29	3	2711	3	HECW1	7	43503272	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	10368487	43503272	115635391	152	45938											
ABCA13	154664	broad.mit.edu	37	chr7	48438918	48438918	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgagctacagagcaggtgGcttgctgggacactattctg	13	8	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48438918	A	A	48438918	1	1	35	0	1	0	0	0	0	0	0	0	31	1218	42	4		4	ABCA13	7	48438918	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	4935646	48438918	110699745	153	45939											
GBAS	2631	broad.mit.edu	37	chr7	56045715	56045715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattctttggtagcccagGttctggaacggtgcctagaa	13	9	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56045715	T	T	56045715	1	4	35	0	1	0	0	0	0	0	0	0	6331	1276	44	3		3	GBAS	7	56045715	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	7606797	56045715	103092948	154	45940											
WBSCR17	64409	broad.mit.edu	37	chr7	70880904	70880904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccccctagaggagtatGtccacaaacgctaccccggg	11	14	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70880904	T	T	70880904	3	4	35	1	0	0	0	0	1	0	0	0	17391	1377	48	3	633	3	WBSCR17	7	70880904	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	14835189	70880904	88257759	155	45941											
ABCB1	5243	broad.mit.edu	37	chr7	87179792	87179792	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatcactgtaccttaacttCttttcgagatgggtaactga	7	8	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87179792	A	A	87179792	4	1	35	1	0	0	0	0	0	1	0	0	40	922	32	3	2698	3	ABCB1	7	87179792	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	16298888	87179792	71958871	156	45942											
STEAP1	26872	broad.mit.edu	37	chr7	89791112	89791112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaaagtcataaatttGtggagacctgttatcagggc	10	5	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89791112	T	T	89791112	1	4	35	0	1	0	0	0	0	0	0	0	15395	1392	48	3		3	STEAP1	7	89791112	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2611320	89791112	69347551	157	45943											
C7orf63	79846	broad.mit.edu	37	chr7	89901079	89901079	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaagcacaaataattttTaaaatttattttcagaagtt	4	3	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89901079	A	A	89901079	1	1	35	0	1	0	0	0	0	0	0	0	2434	1769	61	5		5	C7orf63	7	89901079	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	109967	89901079	69237584	158	45944											
HEPACAM2	253012	broad.mit.edu	37	chr7	92826793	92826793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttttgtaattttaaCctacctttgtagggttgata	6	4	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92826793	T	T	92826793	1	4	35	0	1	0	0	0	0	0	0	0	7120	522	18	4		4	HEPACAM2	7	92826793	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2925714	92826793	66311870	159	45945											
MUC17	140453	broad.mit.edu	37	chr7	100678546	100678546	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtactctattaacaagtatAcctgtcagcaccacgctggt	7	11	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100678546	G	G	100678546	3	3	35	1	0	0	0	0	1	0	0	0	10068	381	14	5	3859	5	MUC17	7	100678546	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	7851753	100678546	58460117	160	45946											
MUC17	140453	broad.mit.edu	37	chr7	100681196	100681196	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaactcctttaacaagtatgCctgtcagcaccacagtggtg	9	11	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100681196	G	G	100681196	3	3	35	1	0	0	0	0	1	0	0	0	10068	739	26	4	6509	4	MUC17	7	100681196	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2650	100681196	58457467	161	45947											
RELN	5649	broad.mit.edu	37	chr7	103557649	103557649	+	Intron	DEL	A	-	-													gtcactgaaatgtaagaaagAaaaaaaaaactctcaataca					rs79791706		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103557649	-	-	103557649	6	5	35	0	1	1	0	1	0	0	0	0	13328	261	9	0		0	RELN	7	103557649	Intron	DEL	A	TCGA-17-Z000-01A-01W-0746-08	2876453	103557649	55581014	162	45948											
NAMPT	10135	broad.mit.edu	37	chr7	105903950	105903950	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccccatattttctcacacGcattataaatgtcatagcta	3	12	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105903950	C	C	105903950	3	2	35	1	0	0	0	0	1	0	0	0	10243	1087	38	4	638	4	NAMPT	7	105903950	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2346301	105903950	53234713	163	45949											
DUS4L	11062	broad.mit.edu	37	chr7	107217700	107217700	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtttgcttcattgagcttGaactaataaccaggggttct	9	8	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107217700	C	C	107217700	1	2	35	0	1	0	0	0	0	0	0	0	4848	1305	45	4		4	DUS4L	7	107217700	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1313750	107217700	51920963	164	45950											
IMMP2L	83943	broad.mit.edu	37	chr7	111034849	111034849	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaagataactctaatcgatCatcctttttttgtacttatt	3	7	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111034849	G	G	111034849	1	3	35	0	1	0	0	0	0	0	0	0	7787	841	29	4		4	IMMP2L	7	111034849	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	3817149	111034849	48103814	165	45951											
POT1	25913	broad.mit.edu	37	chr7	124503684	124503684	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccctgagtctcctttttaTatacttgaatctaagaaagt	5	8	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124503684	C	C	124503684	3	2	35	1	0	0	0	0	1	0	0	0	12355	1406	49	5	1686	5	POT1	7	124503684	Missense_Mutation	SNP	T	TCGA-17-Z000-01A-01W-0746-08	13468835	124503684	34634979	166	45952											
TBXAS1	6916	broad.mit.edu	37	chr7	139543926	139543926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaggggatgatggaatGcaggacccagccacttagaa	14	7	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139543926	T	T	139543926	1	4	35	0	1	0	0	0	0	0	0	0	15786	1334	46	3		3	TBXAS1	7	139543926	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	15040242	139543926	19594737	167	45953											
TRYX3	136541	broad.mit.edu	37	chr7	141954855	141954855	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtctaattctgagagaaGaacattgtcttgaactcaca	7	8	4	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141954855	A	A	141954855	1	1	35	0	1	0	0	0	0	0	0	0	16729	957	33	4		4	TRYX3	7	141954855	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2410929	141954855	17183808	168	45954											
TAS2R40	259286	broad.mit.edu	37	chr7	142919176	142919177	+	Frame_Shift_Ins	INS	-	A	A													tcaggatcaaagagaatggcINSaacggtgaacacagatgcca							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142919177	A	A	142919176	7	5	35	1	0	1	1	0	0	0	0	0	15697	710	25	0	7	0	TAS2R40	7	142919176	Frame_Shift_Ins	INS	-	TCGA-17-Z000-01A-01W-0746-08	964321	142919176	16219487	169	45955											
GIMAP7	168537	broad.mit.edu	37	chr7	150212823	150212823	+	Intron	DEL	T	-	-													ccaggaaccacttgagaaagTtttaaaacttgagaaagttt					rs66554226		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150212823	-	-	150212823	6	5	35	0	1	1	0	1	0	0	0	0	6448	1740	60	0		0	GIMAP7	7	150212823	Intron	DEL	T	TCGA-17-Z000-01A-01W-0746-08	7293647	150212823	8925840	170	45956											
ARHGEF10	9639	broad.mit.edu	37	chr8	1871250	1871250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaggaaactatcaggtaaCaattgaagcaattggattta	8	4	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1871250	T	T	1871250	1	4	35	0	1	0	0	0	0	0	0	0	896	493	17	4		4	ARHGEF10	8	1871250	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08		1871250	144492772	171	45957											
C8orf80	389643	broad.mit.edu	37	chr8	27927253	27927253	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaggtgtctgttgaacatCgcagagaagggaaaaaaaaa	13	4	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27927253	A	A	27927253	1	1	35	0	1	0	0	0	0	0	0	0	2465	899	31	3		3	C8orf80	8	27927253	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	26056003	27927253	118436769	172	45958											
TMEM66	51669	broad.mit.edu	37	chr8	29927382	29927382	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accacttataataataatcaGagaaagaggcaaagccgtgc	8	8	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29927382	A	A	29927382	3	1	35	1	0	0	0	0	1	0	0	0	16318	942	33	4	559	4	TMEM66	8	29927382	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2000129	29927382	116436640	173	45959											
FNTA	2339	broad.mit.edu	37	chr8	42927367	42927367	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatggctaagagatccatctCaggagcttgaatttattgct	9	7	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42927367	T	T	42927367	4	4	35	1	0	0	0	0	0	1	0	0	6035	827	29	4	568	4	FNTA	8	42927367	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	12999985	42927367	103436655	174	45960											
SNTG1	54212	broad.mit.edu	37	chr8	50892132	50892132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccaacgtccttgggctcCctcattctccagttcttggc	7	16	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50892132	A	A	50892132	1	1	35	0	1	0	0	0	0	0	0	0	14988	638	22	2		2	SNTG1	8	50892132	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	7964765	50892132	95471890	175	45961											
PXDNL	137902	broad.mit.edu	37	chr8	52321349	52321349	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctctcctgctcctgtcgCgcgcactcggtgggtgggcc	16	15	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52321349	T	T	52321349	2	4	35	1	0	0	0	0	0	0	0	1	12956	755	27	4		4	PXDNL	8	52321349	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1429217	52321349	94042673	176	45962											
RP1	6101	broad.mit.edu	37	chr8	55534651	55534651	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtataaaatgtgctcatctcAggataatgactctggtctct	8	8	4	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55534651	T	T	55534651	1	4	35	0	1	0	0	0	0	0	0	0	13643	203	7	5		5	RP1	8	55534651	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	3213302	55534651	90829371	177	45963											
NSMAF	8439	broad.mit.edu	37	chr8	59548152	59548152	+	Intron	SNP	C	A	A													ttgatgagcataacaaaaatCacaagataatcatagtacat							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59548152	A	A	59548152	1	1	35	0	1	0	0	0	0	0	0	0	10769	841	29	3		3	NSMAF	8	59548152	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	4013501	59548152	86815870	178	45964	229	2									
NSMAF	8439	broad.mit.edu	37	chr8	59548154	59548154	+	Intron	SNP	C	A	A													gatgagcataacaaaaatcaCaagataatcatagtacattt							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59548154	A	A	59548154	1	1	35	0	1	0	0	0	0	0	0	0	10769	493	17	3		3	NSMAF	8	59548154	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2	59548154	86815868	179	45965	229	2									
SLCO5A1	81796	broad.mit.edu	37	chr8	70623557	70623557	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgcgcctctcaccactgCgcacctcacctctctgcgcc	7	21	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70623557	A	A	70623557	1	1	35	0	1	0	0	0	0	0	0	0	14845	783	27	3		3	SLCO5A1	8	70623557	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	11075403	70623557	75740465	180	45966											
NCOA2	10499	broad.mit.edu	37	chr8	71305771	71305771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccccaacatcctccaccCccacccatacacacagtgag	5	21	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71305771	A	A	71305771	1	1	35	0	1	0	0	0	0	0	0	0	10324	638	22	2		2	NCOA2	8	71305771	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	682214	71305771	75058251	181	45967											
PI15	51050	broad.mit.edu	37	chr8	75737309	75737309	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctactgtaggttatctcctaGgcttgagttcaacatttgtt	8	8	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75737309	A	A	75737309	1	1	35	0	1	0	0	0	0	0	0	0	11963	1015	35	4		4	PI15	8	75737309	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	4431538	75737309	70626713	182	45968											
FAM82B	51115	broad.mit.edu	37	chr8	87487184	87487184	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagaagtttggatccacTgcacataagaaagaaaaaat	8	6	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87487184	G	G	87487184	5	3	35	1	0	0	0	0	0	0	1	0	5685	1594	55	5	193	5	FAM82B	8	87487184	Splice_Site	SNP	T	TCGA-17-Z000-01A-01W-0746-08	11749875	87487184	58876838	183	45969											
STK3	6788	broad.mit.edu	37	chr8	99885935	99885935	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgcttggtagatcttcctCcatcactttattttgagcct	6	10	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99885935	T	T	99885935	1	4	35	0	1	0	0	0	0	0	0	0	15413	870	30	4		4	STK3	8	99885935	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	12398751	99885935	46478087	184	45970											
SNX31	169166	broad.mit.edu	37	chr8	101589385	101589385	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttaactagcacactttccCttccacgataatcctcttaa	2	13	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101589385	T	T	101589385	1	4	35	0	1	0	0	0	0	0	0	0	15015	696	24	4		4	SNX31	8	101589385	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1703450	101589385	44774637	185	45971											
ZNF623	9831	broad.mit.edu	37	chr8	144733483	144733483	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccttcaacaccagaaaattCatactgaagagaagctctat	5	10	3	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144733483	T	T	144733483	3	4	35	1	0	0	0	0	1	0	0	0	18174	826	29	4	1443	4	ZNF623	8	144733483	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	43144098	144733483	1630539	186	45972											
PTPRD	5789	broad.mit.edu	37	chr9	8486432	8486432	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaatgagggagttccactCtactggtattcccattttct	7	11	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8486432	T	T	8486432	1	4	35	0	1	0	0	0	0	0	0	0	12907	928	32	4		4	PTPRD	9	8486432	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08		8486432	132726999	187	45973											
IFT74	80173	broad.mit.edu	37	chr9	27016972	27016972	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaactttatgagttggagtCccatcgagatcaaatgattg	9	6	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27016972	G	G	27016972	3	3	35	1	0	0	0	0	1	0	0	0	7633	855	30	4	895	4	IFT74	9	27016972	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	18530540	27016972	114196459	188	45974											
C9orf79	286234	broad.mit.edu	37	chr9	90502913	90502913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggggccatgtgccctcCtatggaagggaggggacagt	16	11	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90502913	A	A	90502913	3	1	35	1	0	0	0	0	1	0	0	0	2523	680	24	2	3525	2	C9orf79	9	90502913	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	63485941	90502913	50710518	189	45975											
LOC286238	286238	broad.mit.edu	37	chr9	91262362	91262362	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggagaagatgacacgctGgccagccacagggaagcatg	14	10	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91262362	A	A	91262362	3	1	35	1	0	0	0	0	1	0	0	0	8954	1348	47	4	61	4	LOC286238	9	91262362	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	759449	91262362	49951069	190	45976											
ADARB2	105	broad.mit.edu	37	chr10	1342098	1342098	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaataaagtgcagttgctActtgaatgtggctcattgtc	11	6	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1342098	T	T	1342098	1	4	35	0	1	0	0	0	0	0	0	0	283	406	14	5		5	ADARB2	10	1342098	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08		1342098	134192649	191	45977											
UCN3	114131	broad.mit.edu	37	chr10	5412114	5412114	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtgtgtatgcgtgtgtAtatgtgtgtgtatatgtgtg	15	1	0	0	rs141740203	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5412114	G	G	5412114	1	3	35	0	1	0	0	0	0	0	0	0	17055	464	16	5		5	UCN3	10	5412114	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	4070016	5412114	130122633	192	45978											
UPF2	26019	broad.mit.edu	37	chr10	11973605	11973605	+	Intron	DEL	A	-	-													tttgatgctcaaaaggcaacAaaaatttccacttctcttat							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11973605	-	-	11973605	6	5	35	0	1	1	0	1	0	0	0	0	17130	145	5	0		0	UPF2	10	11973605	Intron	DEL	A	TCGA-17-Z000-01A-01W-0746-08	6561491	11973605	123561142	193	45979											
SEC61A2	55176	broad.mit.edu	37	chr10	12208833	12208833	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgctagatgacagggtttCaggcatgggaaccagatcaa	12	8	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12208833	G	G	12208833	1	3	35	0	1	0	0	0	0	0	0	0	14114	841	29	4		4	SEC61A2	10	12208833	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	235228	12208833	123325914	194	45980											
NEBL	10529	broad.mit.edu	37	chr10	21330868	21330868	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttagcattctaatgcattaTaattggcatacaatgagcag	7	6	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21330868	A	A	21330868	1	1	35	0	1	0	0	0	0	0	0	0	10398	1421	49	5		5	NEBL	10	21330868	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	9122035	21330868	114203879	195	45981											
ABI1	10006	broad.mit.edu	37	chr10	27060037	27060038	+	Intron	INS	-	G	G													actttacgttggcaaaaaaaINSgggggggaaaaagtagacat							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27060038	G	G	27060037	6	5	35	0	1	1	1	0	0	0	0	0	88	87	3	0		0	ABI1	10	27060037	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	5729169	27060037	108474710	196	45982											
SVIL	6840	broad.mit.edu	37	chr10	29777571	29777571	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcttgtagggcacggcgCtgttgttagagttctgttcc	13	10	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29777571	T	T	29777571	3	4	35	1	0	0	0	0	1	0	0	0	15539	797	28	4	2401	4	SVIL	10	29777571	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2717534	29777571	105757176	197	45983											
ANKRD30A	91074	broad.mit.edu	37	chr10	37447174	37447174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttggcatgataacaaataCaataacccaaaagaccccaa	5	11	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37447174	A	A	37447174	1	1	35	0	1	0	0	0	0	0	0	0	658	493	17	3		3	ANKRD30A	10	37447174	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	7669603	37447174	98087573	198	45984											
ZNF248	57209	broad.mit.edu	37	chr10	38145394	38145394	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctccgatatatgctgagCtcagacatgacacttttcac	8	11	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38145394	T	T	38145394	1	4	35	0	1	0	0	0	0	0	0	0	17919	812	28	4		4	ZNF248	10	38145394	5'UTR	SNP	C	TCGA-17-Z000-01A-01W-0746-08	698220	38145394	97389353	199	45985											
SYT15	83849	broad.mit.edu	37	chr10	46965322	46965322	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcttgtgcagtcctgtggAccagagctaaggagtcacac	14	10	1	1	rs142851937	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46965322	G	G	46965322	1	3	35	0	1	0	0	0	0	0	0	0	15590	290	10	5		5	SYT15	10	46965322	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	8819928	46965322	88569425	200	45986											
ANXA8	653145	broad.mit.edu	37	chr10	47024033	47024033	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagccctccagcccagggcGttagttgttgacccatcttt	10	13	1	2	rs75491304	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47024033	A	A	47024033	1	1	35	0	1	0	0	0	0	0	0	0	724	1160	40	4		4	ANXA8	10	47024033	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	58711	47024033	88510714	201	45987											
NDST2	8509	broad.mit.edu	37	chr10	75565704	75565704	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctccacctcggatgctcCggtctagttcacgagagcct	10	15	3	1	rs150846687	byFrequency	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75565704	T	T	75565704	3	4	35	1	0	0	0	0	1	0	0	0	10351	652	23	4	1170	4	NDST2	10	75565704	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	28541671	75565704	59969043	202	45988											
LIPA	3988	broad.mit.edu	37	chr10	91170740	91170740	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagagatagaagtagtaaagAaaaaacagtgtaccctattc	9	5	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91170740	G	G	91170740	1	3	35	0	1	0	0	0	0	0	0	0	8892	261	9	5		5	LIPA	10	91170740	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	15605036	91170740	44364007	203	45989											
CCNJ	54619	broad.mit.edu	37	chr10	97810018	97810018	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccttttgacttaggagctGaagttgccctcctataaagg	9	9	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97810018	A	A	97810018	2	1	35	1	0	0	0	0	0	0	0	1	2958	1277	45	4		4	CCNJ	10	97810018	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	6639278	97810018	37724729	204	45990											
TLL2	7093	broad.mit.edu	37	chr10	98205675	98205675	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgagtacagagtctgctttGagggtgatgaaaaagttctg	13	4	2	5			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98205675	C	C	98205675	1	2	35	0	1	0	0	0	0	0	0	0	16069	1305	45	4		4	TLL2	10	98205675	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	395657	98205675	37329072	205	45991			2	44		3	3	392	G		9.828899e-06
TLL2	7093	broad.mit.edu	37	chr10	98205942	98205942	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacctagaggaatggagaaGaaagaggcatgaggacacat	13	7	0	5			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98205942	A	A	98205942	1	1	35	0	1	0	0	0	0	0	0	0	16069	957	33	4		4	TLL2	10	98205942	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	267	98205942	37328805	206	45992			2	44		3	3	392	G		9.828899e-06
TLL2	7093	broad.mit.edu	37	chr10	98206066	98206066	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcgttccacaaatcaactGagcccttaccacatggcccc	5	17	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98206066	C	C	98206066	1	2	35	0	1	0	0	0	0	0	0	0	16069	1305	45	4		4	TLL2	10	98206066	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	124	98206066	37328681	207	45993			2	44		3	3	392	G		9.828899e-06
ABCC2	1244	broad.mit.edu	37	chr10	101578719	101578719	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgttgaaaggcaaggtgaGaaatcattgaacatgatgaa	11	5	1	5			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101578719	A	A	101578719	1	1	35	0	1	0	0	0	0	0	0	0	53	957	33	4		4	ABCC2	10	101578719	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3372653	101578719	33956028	208	45994											
FAM178A	55719	broad.mit.edu	37	chr10	102706855	102706855	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccccacaacctcctgtgGttggtacagctggtccctaa	8	15	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102706855	A	A	102706855	4	1	35	1	0	0	0	0	0	1	0	0	5548	1270	44	4	3048	4	FAM178A	10	102706855	Nonsense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1128136	102706855	32827892	209	45995											
COL17A1	1308	broad.mit.edu	37	chr10	105815499	105815499	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catagatgcaaagaagaaagGgactcaggggagctggccct	14	8	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105815499	C	C	105815499	1	2	35	0	1	0	0	0	0	0	0	0	3706	1247	43	4		4	COL17A1	10	105815499	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3108644	105815499	29719248	210	45996											
NRAP	4892	broad.mit.edu	37	chr10	115406792	115406792	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccgggtaaccctgccGggtgcatcaaaaacttcagt	9	14	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115406792	A	A	115406792	1	1	35	0	1	0	0	0	0	0	0	0	10733	1131	39	4		4	NRAP	10	115406792	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	9591293	115406792	20127955	211	45997											
GFRA1	2674	broad.mit.edu	37	chr10	118028899	118028900	+	Intron	DNP	CA	AG	AG													tcatcctatttctaatttccCagaaacactgtgccattcaa							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	118028900	AG	AG	118028899	1	1	35	0	1	0	0	0	0	0	0	0	6411	609	21	2		2	GFRA1	10	118028899	Intron	DNP	CA	TCGA-17-Z000-01A-01W-0746-08	2622107	118028899	17505848	212	45998											
PNLIP	5406	broad.mit.edu	37	chr10	118310710	118310710	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagaacatcaggatcgtggGagcagaagtggcatattttg	14	6	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118310710	C	C	118310710	3	2	35	1	0	0	0	0	1	0	0	0	12244	1174	41	4	439	4	PNLIP	10	118310710	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	281811	118310710	17224037	213	45999											
FANK1	92565	broad.mit.edu	37	chr10	127606671	127606671	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaaaaaagggtagTttggtggttgccagaggctg	14	3	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127606671	A	A	127606671	1	1	35	0	1	0	0	0	0	0	0	0	5729	1740	60	5		5	FANK1	10	127606671	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	9295961	127606671	7928076	214	46000											
EPS8L2	64787	broad.mit.edu	37	chr11	722496	722496	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctgcgcggccacctggtCcctaaggagatgtcgctgtg	13	13	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	722496	A	A	722496	2	1	35	1	0	0	0	0	0	0	0	1	5238	842	30	3		3	EPS8L2	11	722496	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08		722496	134284020	215	46001											
UBQLNL	143630	broad.mit.edu	37	chr11	5537572	5537572	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgcctgcagtcttcactaTcactcgagtggcacttgaag	10	11	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5537572	G	G	5537572	3	3	35	1	0	0	0	0	1	0	0	0	17026	1435	50	5	1331	5	UBQLNL	11	5537572	Missense_Mutation	SNP	T	TCGA-17-Z000-01A-01W-0746-08	4815076	5537572	129468944	216	46002											
USP47	55031	broad.mit.edu	37	chr11	11944424	11944424	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactgaaaagatctcaaaaTctggacttgaaaaggtacct	8	7	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11944424	A	A	11944424	3	1	35	1	0	0	0	0	1	0	0	0	17205	1435	50	5	1206	5	USP47	11	11944424	Missense_Mutation	SNP	T	TCGA-17-Z000-01A-01W-0746-08	6406852	11944424	123062092	217	46003											
ANO5	203859	broad.mit.edu	37	chr11	22281166	22281166	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgcatccttaaagcaGgtcaaaagcttccttactcc	7	11	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22281166	A	A	22281166	2	1	35	1	0	0	0	0	0	0	0	1	700	991	35	4		4	ANO5	11	22281166	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	10336742	22281166	112725350	218	46004											
MPPED2	744	broad.mit.edu	37	chr11	30516991	30516991	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtagtagtcctgtttaacaaGgtctgccatgaattccttat	8	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30516991	C	C	30516991	3	2	35	1	0	0	0	0	1	0	0	0	9836	1000	35	4	584	4	MPPED2	11	30516991	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	8235825	30516991	104489525	219	46005											
OR4P4	81300	broad.mit.edu	37	chr11	55405947	55405947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacattgctatttggatGggaaacttactcataatgat	8	6	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55405947	T	T	55405947	3	4	35	1	0	0	0	0	1	0	0	0	11174	1348	47	2	116	2	OR4P4	11	55405947	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	24888956	55405947	79600569	220	46006											
OR9G4	283189	broad.mit.edu	37	chr11	56510345	56510345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttgctttcctgaaggCctctttgatatctttgtttc	8	9	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56510345	A	A	56510345	3	1	35	1	0	0	0	0	1	0	0	0	11345	739	26	3	43	3	OR9G4	11	56510345	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1104398	56510345	78496171	221	46007											
FIBP	9158	broad.mit.edu	37	chr11	65655330	65655330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtaaatcccatccctcccTgggcctgtttcagccggcaa	10	15	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65655330	A	A	65655330	1	1	35	0	1	0	0	0	0	0	0	0	5943	1595	55	5		5	FIBP	11	65655330	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	9144985	65655330	69351186	222	46008											
RIN1	9610	broad.mit.edu	37	chr11	66099816	66099816	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagggccttcctgggcttgAccctggcccccttcagcagt	12	16	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66099816	T	T	66099816	2	4	35	1	0	0	0	0	0	0	0	1	13482	262	10	5		5	RIN1	11	66099816	Silent	SNP	A	TCGA-17-Z000-01A-01W-0746-08	444486	66099816	68906700	223	46009											
PIWIL4	143689	broad.mit.edu	37	chr11	94318460	94318460	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttatagacattcatatgTatatttagtatctaaacctt	3	6	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94318460	G	G	94318460	1	3	35	0	1	0	0	0	0	0	0	0	12055	1653	57	5		5	PIWIL4	11	94318460	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	28218644	94318460	40688056	224	46010											
GRIA4	2893	broad.mit.edu	37	chr11	105795326	105795326	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctacattggtgtcagcGtggtcttattcctagttagt	10	8	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105795326	A	A	105795326	3	1	35	1	0	0	0	0	1	0	0	0	6836	1145	40	4	1757	4	GRIA4	11	105795326	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	11476866	105795326	29211190	225	46011											
ETS1	2113	broad.mit.edu	37	chr11	128350260	128350260	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgctgcaggctgttgaaagAtgactggctgctccaggact	13	10	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128350260	T	T	128350260	3	4	35	1	0	0	0	0	1	0	0	0	5317	333	12	5	520	5	ETS1	11	128350260	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	22554934	128350260	6656256	226	46012											
NTM	50863	broad.mit.edu	37	chr11	131722472	131722472	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctccatggtcacctggcaGatgctcatggaatcatgtgg	12	10	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131722472	T	T	131722472	1	4	35	0	1	0	0	0	0	0	0	0	10794	957	33	3		3	NTM	11	131722472	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3372212	131722472	3284044	227	46013											
NTM	50863	broad.mit.edu	37	chr11	131809956	131809956	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagaaacctatttgaaaCtgtgtaaaacacctcccttc	5	10	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131809956	G	G	131809956	1	3	35	0	1	0	0	0	0	0	0	0	10794	580	20	4		4	NTM	11	131809956	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	87484	131809956	3196560	228	46014											
B4GALNT3	283358	broad.mit.edu	37	chr12	657408	657408	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccagtggcgacggaaCgaccctggagccaagttcac	11	14	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	657408	T	T	657408	2	4	35	1	0	0	0	0	0	0	0	1	1273	535	19	4		4	B4GALNT3	12	657408	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08		657408	133194487	229	46015											
ANO2	57101	broad.mit.edu	37	chr12	6032436	6032436	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacatacacacacacacAcacacacacgcacacacaca	1	19	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6032436	G	G	6032436	1	3	35	0	1	0	0	0	0	0	0	0	697	174	6	5		5	ANO2	12	6032436	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	5375028	6032436	127819459	230	46016											
C12orf57	113246	broad.mit.edu	37	chr12	7053849	7053849	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggcgggtcagacgcgGgaaggcgggagttgggtcgg	24	6	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7053849	A	A	7053849	1	1	35	0	1	0	0	0	0	0	0	0	1714	1247	43	4		4	C12orf57	12	7053849	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1021413	7053849	126798046	231	46017											
KLRG1	10219	broad.mit.edu	37	chr12	9162084	9162084	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaaatggtcttcaagcctCaagctgtgaagttcctttac	7	10	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9162084	G	G	9162084	4	3	35	1	0	0	0	0	0	1	0	0	8492	838	29	4	539	4	KLRG1	12	9162084	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2108235	9162084	124689811	232	46018											
KLRG1	10219	broad.mit.edu	37	chr12	9162484	9162484	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatgatattctgagctaatCtgataaaatctatgccaata	5	6	3	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9162484	G	G	9162484	1	3	35	0	1	0	0	0	0	0	0	0	8492	928	32	4		4	KLRG1	12	9162484	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	400	9162484	124689411	233	46019											
A2M	2	broad.mit.edu	37	chr12	9265197	9265197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctcctcccctatttgctgTtgcactcttccctggagatc	7	15	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9265197	C	C	9265197	1	2	35	0	1	0	0	0	0	0	0	0	4	1740	60	5		5	A2M	12	9265197	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	102713	9265197	124586698	234	46020											
SOX5	6660	broad.mit.edu	37	chr12	23728667	23728667	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgagggggcctgccccacTgtttattctcagagctggca	12	11	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23728667	A	A	23728667	3	1	35	1	0	0	0	0	1	0	0	0	15068	1580	55	5	1045	5	SOX5	12	23728667	Missense_Mutation	SNP	T	TCGA-17-Z000-01A-01W-0746-08	14463470	23728667	110123228	235	46021											
C12orf77	196415	broad.mit.edu	37	chr12	25149381	25149381	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttacttggtcatttctttCtaggtgctatttggtgcttt	10	6	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25149381	T	T	25149381	1	4	35	0	1	0	0	0	0	0	0	0	1729	928	32	4		4	C12orf77	12	25149381	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1420714	25149381	108702514	236	46022											
IFLTD1	160492	broad.mit.edu	37	chr12	25762899	25762899	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtggagtttacaaagGcaggtgggcctagttgagct	16	6	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25762899	A	A	25762899	1	1	35	0	1	0	0	0	0	0	0	0	7600	1218	42	4		4	IFLTD1	12	25762899	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	613518	25762899	108088996	237	46023											
GXYLT1	283464	broad.mit.edu	37	chr12	42491397	42491397	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgataattccattgacaCggaaaaacaaaaaggctttc	8	8	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42491397	A	A	42491397	2	1	35	1	0	0	0	0	0	0	0	1	6968	523	19	3		3	GXYLT1	12	42491397	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	16728498	42491397	91360498	238	46024											
ADAMTS20	80070	broad.mit.edu	37	chr12	43860531	43860531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaaacttaaagcaggggCcattacatgatactttgtaa	9	6	0	2	rs149591802	byFrequency	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43860531	A	A	43860531	3	1	35	1	0	0	0	0	1	0	0	0	266	739	26	3	4564	3	ADAMTS20	12	43860531	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1369134	43860531	89991364	239	46025											
ARID2	196528	broad.mit.edu	37	chr12	46254641	46254641	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggccagcctaacagttctCagccttctccattcagtgga	9	13	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46254641	G	G	46254641	3	3	35	1	0	0	0	0	1	0	0	0	917	827	29	4	4893	4	ARID2	12	46254641	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2394110	46254641	87597254	240	46026											
TFCP2	7024	broad.mit.edu	37	chr12	51504805	51504805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattgaacaattttgaggGccactcagttttaaataaga	7	6	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51504805	T	T	51504805	1	4	35	0	1	0	0	0	0	0	0	0	15918	1218	42	3		3	TFCP2	12	51504805	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	5250164	51504805	82347090	241	46027											
KRT83	3889	broad.mit.edu	37	chr12	52708943	52708943	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaggttcttcctgcgagCtaacctcagtctgtcttgct	10	11	4	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52708943	G	G	52708943	1	3	35	0	1	0	0	0	0	0	0	0	8568	812	28	4		4	KRT83	12	52708943	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1204138	52708943	81142952	242	46028											
PRR13	54458	broad.mit.edu	37	chr12	53839947	53839947	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcccttgtgctccccacCccctacctccacctgagcct	6	21	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53839947	T	T	53839947	1	4	35	0	1	0	0	0	0	0	0	0	12691	638	22	4		4	PRR13	12	53839947	3'UTR	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1131004	53839947	80011948	243	46029											
PPM1H	57460	broad.mit.edu	37	chr12	63195774	63195774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgttctcaggctcctccCccaggcaggtagggggcagg	16	13	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63195774	A	A	63195774	3	1	35	1	0	0	0	0	1	0	0	0	12442	623	22	2	998	2	PPM1H	12	63195774	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	9355827	63195774	70656121	244	46030											
CPSF6	11052	broad.mit.edu	37	chr12	69652822	69652822	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggtccaccaccaacagatCcatatgggcgacctccacca	8	16	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69652822	G	G	69652822	3	3	35	1	0	0	0	0	1	0	0	0	3861	855	30	4	1169	4	CPSF6	12	69652822	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6457048	69652822	64199073	245	46031											
PTPRB	5787	broad.mit.edu	37	chr12	70963486	70963486	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accacatttatctgattcttCagggacccgctgactgaggc	9	12	3	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70963486	T	T	70963486	2	4	35	1	0	0	0	0	0	0	0	1	12904	813	29	4		4	PTPRB	12	70963486	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1310664	70963486	62888409	246	46032											
NAV3	89795	broad.mit.edu	37	chr12	78598805	78598805	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactctgcctcaggagagcCcagccttacttcagctgcga	9	15	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78598805	T	T	78598805	3	4	35	1	0	0	0	0	1	0	0	0	10279	623	22	4	7009	4	NAV3	12	78598805	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	7635319	78598805	55253090	247	46033											
PPP1R12A	4659	broad.mit.edu	37	chr12	80200036	80200036	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttctgaagcccagctgcaGaggtaactgttggtgttgat	12	7	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80200036	C	C	80200036	3	2	35	1	0	0	0	0	1	0	0	0	12455	942	33	4	1411	4	PPP1R12A	12	80200036	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1601231	80200036	53651859	248	46034											
ATXN2	6311	broad.mit.edu	37	chr12	111923112	111923112	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgattcactggcatgggCgtcataggtattgggtataa	13	6	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111923112	T	T	111923112	2	4	35	1	0	0	0	0	0	0	0	1	1215	755	27	4		4	ATXN2	12	111923112	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	31723076	111923112	21928783	249	46035											
C12orf51	283450	broad.mit.edu	37	chr12	112677043	112677043	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcacttctcttcgctcctGacaaagggtcatggattaca	9	11	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112677043	A	A	112677043	1	1	35	0	1	0	0	0	0	0	0	0	1709	1305	45	4		4	C12orf51	12	112677043	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	753931	112677043	21174852	250	46036											
PARP4	143	broad.mit.edu	37	chr13	25024012	25024012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaatatttttgaagtacAtgttaacagtgttgagaaag	9	2	0	3	rs146730967	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25024012	G	G	25024012	1	3	35	0	1	0	0	0	0	0	0	0	11557	232	8	5		5	PARP4	13	25024012	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08		25024012	90145866	251	46037											
PARP4	143	broad.mit.edu	37	chr13	25043948	25043948	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctactcaaccttgtagccaTggggactccaaaaacaaagg	9	11	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25043948	A	A	25043948	1	1	35	0	1	0	0	0	0	0	0	0	11557	1479	51	5		5	PARP4	13	25043948	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	19936	25043948	90125930	252	46038											
ATP12A	479	broad.mit.edu	37	chr13	25255612	25255612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaggggctcctgactcCtgcaggtcctgaccccgcag	14	14	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25255612	T	T	25255612	1	4	35	0	1	0	0	0	0	0	0	0	1126	696	24	4		4	ATP12A	13	25255612	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	211664	25255612	89914266	253	46039											
RNF17	56163	broad.mit.edu	37	chr13	25442836	25442836	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgctgttcaagttaagcaCgttgtctcacctaatgaagt	8	8	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25442836	T	T	25442836	2	4	35	1	0	0	0	0	0	0	0	1	13572	535	19	4		4	RNF17	13	25442836	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	187224	25442836	89727042	254	46040											
SHISA2	387914	broad.mit.edu	37	chr13	26620732	26620732	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgcctgtagccaggctgCaggccgtccatgaaaggtgg	14	11	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26620732	T	T	26620732	2	4	35	1	0	0	0	0	0	0	0	1	14393	697	25	4		4	SHISA2	13	26620732	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1177896	26620732	88549146	255	46041											
NBEA	26960	broad.mit.edu	37	chr13	35630161	35630161	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaagtggtacatgatcagCattgtccacatttacaatcg	7	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35630161	T	T	35630161	2	4	35	1	0	0	0	0	0	0	0	1	10281	709	25	4		4	NBEA	13	35630161	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	9009429	35630161	79539717	256	46042											
POSTN	10631	broad.mit.edu	37	chr13	38172778	38172778	+	Frame_Shift_Del	DEL	A	-	-													ccctgatacgactatgagccAagatcttgtcataatgattg							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38172778	-	-	38172778	7	5	35	1	0	1	0	1	0	0	0	0	12354	131	5	0	2516	0	POSTN	13	38172778	Frame_Shift_Del	DEL	A	TCGA-17-Z000-01A-01W-0746-08	2542617	38172778	76997100	257	46043											
WBP4	11193	broad.mit.edu	37	chr13	41636806	41636806	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactggaagtcacagccaaAgaaattctgtgattactgca	8	9	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41636806	G	G	41636806	3	3	35	1	0	0	0	0	1	0	0	0	17388	72	3	5	35	5	WBP4	13	41636806	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	3464028	41636806	73533072	258	46044											
RB1	5925	broad.mit.edu	37	chr13	48916812	48916812	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgacctagatgagatgtcGttcacttttactgagctaca	9	8	1	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48916812	T	T	48916812	2	4	35	1	0	0	0	0	0	0	0	1	13206	1132	40	3		3	RB1	13	48916812	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	7280006	48916812	66253066	259	46045											
PCDH17	27253	broad.mit.edu	37	chr13	58299398	58299398	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcttttgcaagactgccgGggaaacgaccctgtggctgt	13	10	0	1	rs141868878		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58299398	C	C	58299398	2	2	35	1	0	0	0	0	0	0	0	1	11606	1219	43	4		4	PCDH17	13	58299398	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	9382586	58299398	56870480	260	46046											
SLITRK5	26050	broad.mit.edu	37	chr13	88327643	88327643	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcccttacaggaggtaaAatgcacacttgctgcccccc	7	16	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88327643	G	G	88327643	1	3	35	0	1	0	0	0	0	0	0	0	14860	29	1	5		5	SLITRK5	13	88327643	5'UTR	SNP	A	TCGA-17-Z000-01A-01W-0746-08	30028245	88327643	26842235	261	46047											
NALCN	259232	broad.mit.edu	37	chr13	101890210	101890210	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagatgagctaatatatcCagtaaatcccaaacaccata	6	9	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101890210	A	A	101890210	4	1	35	1	0	0	0	0	0	1	0	0	10242	603	21	2	4018	2	NALCN	13	101890210	Nonsense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	13562567	101890210	13279668	262	46048											
F7	2155	broad.mit.edu	37	chr13	113772899	113772899	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cccctctgcctgcccgaacgGacgttctctgagaggacgct	11	16	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113772899	C	C	113772899	2	2	35	1	0	0	0	0	0	0	0	1	5392	1161	41	4		4	F7	13	113772899	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	11882689	113772899	1396979	263	46049											
TMCO3	55002	broad.mit.edu	37	chr13	114188487	114188487	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctattatcggaagctgcacAtggaaagcaaggggaacaaa	11	8	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114188487	T	T	114188487	3	4	35	1	0	0	0	0	1	0	0	0	16120	217	8	5	1501	5	TMCO3	13	114188487	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	415588	114188487	981391	264	46050											
NGDN	25983	broad.mit.edu	37	chr14	23946877	23946877	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagccctgtagtatctcttCcatactgggcaataatctcc	6	13	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23946877	A	A	23946877	1	1	35	0	1	0	0	0	0	0	0	0	10488	870	30	3		3	NGDN	14	23946877	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08		23946877	83402663	265	46051											
TM9SF1	10548	broad.mit.edu	37	chr14	24680595	24680595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcccagtgcctgggtcCcctccacccctccccccgta	6	23	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24680595	A	A	24680595	1	1	35	0	1	0	0	0	0	0	0	0	16100	638	22	2		2	TM9SF1	14	24680595	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	733718	24680595	82668945	266	46052											
NIN	51199	broad.mit.edu	37	chr14	51239175	51239175	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgtggtacgtcgtccactCtcatcgaaagactggaagga	12	9	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51239175	A	A	51239175	3	1	35	1	0	0	0	0	1	0	0	0	10512	912	32	3	5816	3	NIN	14	51239175	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	26558580	51239175	56110365	267	46053											
GNG2	54331	broad.mit.edu	37	chr14	52412559	52412560	+	Intron	INS	-	TCTT	TCTT													ctcaagcttagaagacaaacINStcttatttgcacaggtaaac					rs145296928	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCTT	52412560	TCTT	TCTT	52412559	6	5	35	0	1	1	1	0	0	0	0	0	6591	580	20	0		0	GNG2	14	52412559	Intron	INS	-	TCGA-17-Z000-01A-01W-0746-08	1173384	52412559	54936981	268	46054											
KCNH5	27133	broad.mit.edu	37	chr14	63194944	63194944	+	Intron	DEL	A	-	-													ccctatctctattaaactacAaaaaaaaaaaaatagctggg					rs67931985		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63194944	-	-	63194944	6	5	35	0	1	1	0	1	0	0	0	0	8105	145	5	0		0	KCNH5	14	63194944	Intron	DEL	A	TCGA-17-Z000-01A-01W-0746-08	10782385	63194944	44154596	269	46055											
FOS	2353	broad.mit.edu	37	chr14	75747810	75747810	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgacttcctgttcccaGcatcatccaggcccagtggc	9	14	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75747810	A	A	75747810	3	1	35	1	0	0	0	0	1	0	0	0	6043	971	34	4	840	4	FOS	14	75747810	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	12552866	75747810	31601730	270	46056											
TTLL5	23093	broad.mit.edu	37	chr14	76135766	76135766	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgtcgttatagggatcatCcatgcatcatgtggactgga	11	7	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76135766	T	T	76135766	3	4	35	1	0	0	0	0	1	0	0	0	16856	855	30	4	88	4	TTLL5	14	76135766	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	387956	76135766	31213774	271	46057											
TSHR	7253	broad.mit.edu	37	chr14	81422342	81422342	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtctgtgtgtgtagatgtGtgtgtgtgctaaaaacttaa	12	3	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81422342	C	C	81422342	1	2	35	0	1	0	0	0	0	0	0	0	16747	1392	48	4		4	TSHR	14	81422342	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	5286576	81422342	25927198	272	46058											
RIN3	79890	broad.mit.edu	37	chr14	93118141	93118141	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcagcgccctgcccacCgaccagccacctcttggaaa	9	18	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93118141	T	T	93118141	2	4	35	1	0	0	0	0	0	0	0	1	13484	639	23	4		4	RIN3	14	93118141	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	11695799	93118141	14231399	273	46059											
PAPOLA	10914	broad.mit.edu	37	chr14	97022723	97022723	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctcacctcataaagaagaGagtcccaagaaaaccaaaac	5	12	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97022723	C	C	97022723	3	2	35	1	0	0	0	0	1	0	0	0	11523	933	33	4	2051	4	PAPOLA	14	97022723	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3904582	97022723	10326817	274	46060											
XRCC3	7517	broad.mit.edu	37	chr14	104177222	104177222	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacaccTgaaaatcccatagtacatcc	2	17	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104177222	C	C	104177222	1	2	35	0	1	0	0	0	0	0	0	0	17581	1595	55	5		5	XRCC3	14	104177222	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	7154499	104177222	3172318	275	46061											
INF2	64423	broad.mit.edu	37	chr14	105211102	105211103	+	Intron	DNP	AC	TT	TT													caagcggaagaaaccccagcActgctgaccacttcttgggt							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	105211103	TT	TT	105211102	1	4	35	0	1	0	0	0	0	0	0	0	7804	174	6	5		5	INF2	14	105211102	Intron	DNP	AC	TCGA-17-Z000-01A-01W-0746-08	1033880	105211102	2138438	276	46062											
TRPM1	4308	broad.mit.edu	37	chr15	31318402	31318402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctcatcctccttctccCggaagtgctcctgcacgcac	8	18	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31318402	A	A	31318402	3	1	35	1	0	0	0	0	1	0	0	0	16710	652	23	1	1316	1	TRPM1	15	31318402	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08		31318402	71212990	277	46063											
C15orf41	84529	broad.mit.edu	37	chr15	36950114	36950114	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaactccacgtgagttAcccttttttcctaatggtac	8	10	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36950114	G	G	36950114	1	3	35	0	1	0	0	0	0	0	0	0	1808	406	14	5		5	C15orf41	15	36950114	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	5631712	36950114	65581278	278	46064											
CAPN3	825	broad.mit.edu	37	chr15	42689048	42689048	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaggcccgtctgcagcAccaggtcactgaggatggag	15	10	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42689048	T	T	42689048	3	4	35	1	0	0	0	0	1	0	0	0	2654	159	6	5	1252	5	CAPN3	15	42689048	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	5738934	42689048	59842344	279	46065											
UNC13C	440279	broad.mit.edu	37	chr15	54586371	54586371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaccaatgcctttccaggaCattctgttgaactttagatg	7	9	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54586371	T	T	54586371	1	4	35	0	1	0	0	0	0	0	0	0	17112	493	17	4		4	UNC13C	15	54586371	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	11897323	54586371	47945021	280	46066											
FOXB1	27023	broad.mit.edu	37	chr15	60297453	60297453	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaagctgcggggacatgttCgagaacggcagcttcctgcg	14	12	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60297453	G	G	60297453	3	3	35	1	0	0	0	0	1	0	0	0	6050	883	31	4	293	4	FOXB1	15	60297453	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	5711082	60297453	42233939	281	46067											
TLN2	83660	broad.mit.edu	37	chr15	62949974	62949974	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttgtgtttcaggcacGggatgacatcctgaatggct	11	10	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62949974	C	C	62949974	3	2	35	1	0	0	0	0	1	0	0	0	16071	1116	39	4	687	4	TLN2	15	62949974	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	2652521	62949974	39581418	282	46068											
CA12	771	broad.mit.edu	37	chr15	63637803	63637803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggatgtgcatgtccgagGgcaggttcagcttcactgcg	14	11	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63637803	T	T	63637803	3	4	35	1	0	0	0	0	1	0	0	0	2539	1232	43	2	794	2	CA12	15	63637803	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	687829	63637803	38893589	283	46069											
NEO1	4756	broad.mit.edu	37	chr15	73541659	73541659	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagggggaaaaagaaacaTaggaaatgaaaagttgacag	14	2	0	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73541659	C	C	73541659	1	2	35	0	1	0	0	0	0	0	0	0	10431	1421	49	5		5	NEO1	15	73541659	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	9903856	73541659	28989733	284	46070											
TBC1D21	161514	broad.mit.edu	37	chr15	74173918	74173918	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcagggggcaggtgtggcGttggatgaagcccttttggt	20	6	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74173918	C	C	74173918	1	2	35	0	1	0	0	0	0	0	0	0	15729	1160	40	4		4	TBC1D21	15	74173918	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	632259	74173918	28357474	285	46071											
STRA6	64220	broad.mit.edu	37	chr15	74477199	74477199	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagccacgcacaggtgggctCcatgacagcccgggccggca	14	16	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74477199	A	A	74477199	1	1	35	0	1	0	0	0	0	0	0	0	15440	870	30	3		3	STRA6	15	74477199	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	303281	74477199	28054193	286	46072											
NTRK3	4916	broad.mit.edu	37	chr15	88770994	88770994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcccgttcctccctcccCctttacccacctcagttctg	4	21	2	0	rs144524870	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88770994	A	A	88770994	1	1	35	0	1	0	0	0	0	0	0	0	10803	638	22	2		2	NTRK3	15	88770994	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	14293795	88770994	13760398	287	46073											
VPS33B	26276	broad.mit.edu	37	chr15	91546277	91546277	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgcccaataactgccctcCatcaagttccctcaagaata	4	14	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91546277	G	G	91546277	1	3	35	0	1	0	0	0	0	0	0	0	17329	609	21	4		4	VPS33B	15	91546277	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	2775283	91546277	10985115	288	46074											
LINS1	55180	broad.mit.edu	37	chr15	101110081	101110081	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatttagattcagttgcatCaaagttattgcaaatggtga	8	4	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101110081	T	T	101110081	3	4	35	1	0	0	0	0	1	0	0	0	8891	826	29	4	641	4	LINS1	15	101110081	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	9563804	101110081	1421311	289	46075											
ZNF263	10127	broad.mit.edu	37	chr16	3336081	3336081	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaggagtgggggcatcAggatcctagtaagagggccc	17	9	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3336081	C	C	3336081	3	2	35	1	0	0	0	0	1	0	0	0	17929	188	7	5	715	5	ZNF263	16	3336081	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08		3336081	87018672	290	46076											
SNX29	92017	broad.mit.edu	37	chr16	12285628	12285628	+	Intron	DEL	T	-	-													tgacctttgaagatttaggaTgtggctgcaaacaccacaaa					rs35626109		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12285628	-	-	12285628	6	5	35	0	1	1	0	1	0	0	0	0	15012	1479	51	0		0	SNX29	16	12285628	Intron	DEL	T	TCGA-17-Z000-01A-01W-0746-08	8949547	12285628	78069125	291	46077											
CACNG3	10368	broad.mit.edu	37	chr16	24324241	24324241	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaagaaggaaggaaggaagGaagaaagaaagaaagaaaga	15	0	0	6	rs71154299		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24324241	A	A	24324241	1	1	35	0	1	0	0	0	0	0	0	0	2584	1189	41	4		4	CACNG3	16	24324241	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	12038613	24324241	66030512	292	46078											
ZNF267	10308	broad.mit.edu	37	chr16	31927805	31927805	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actagagaaaaactttaaaaAtgtaaaacatggagcagatt	7	4	0	2	rs76018203		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31927805	T	T	31927805	1	4	35	0	1	0	0	0	0	0	0	0	17932	116	4	5		5	ZNF267	16	31927805	3'UTR	SNP	A	TCGA-17-Z000-01A-01W-0746-08	7603564	31927805	58426948	293	46079											
CHD9	80205	broad.mit.edu	37	chr16	53243421	53243450	+	In_Frame_Del	DEL	TCTGGGACATATACTAAGTTGCAGAATACC	-	-													cttccaagaagagcgatggtTctgggacatatactaagttg							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53243450	-	-	53243421	7	5	35	1	0	1	0	1	0	0	0	0	3363	1783	62	0	1486	0	CHD9	16	53243421	In_Frame_Del	DEL	TCTGGGACATATACTAAGTTGCAGAATACC	TCGA-17-Z000-01A-01W-0746-08	21315616	53243421	37111332	294	46080											
CCDC135	84229	broad.mit.edu	37	chr16	57731941	57731941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagtgggctgaatgggcgaGgatggagaaaatgatgaggc	19	4	0	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57731941	T	T	57731941	3	4	35	1	0	0	0	0	1	0	0	0	2795	1000	35	2	82	2	CCDC135	16	57731941	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	4488520	57731941	32622812	295	46081											
CDH5	1003	broad.mit.edu	37	chr16	66413319	66413319	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcagcagtggcagcagcaGgtgctaaccctgcccaacgg	14	13	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66413319	C	C	66413319	3	2	35	1	0	0	0	0	1	0	0	0	3143	1000	35	4	81	4	CDH5	16	66413319	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	8681378	66413319	23941434	296	46082											
HYDIN	54768	broad.mit.edu	37	chr16	70980470	70980470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggtgaagggcaagttGcaagggggtgctatggtggc	20	4	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70980470	T	T	70980470	1	4	35	0	1	0	0	0	0	0	0	0	7537	1334	46	3		3	HYDIN	16	70980470	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	4567151	70980470	19374283	297	46083											
FTSJD1	55783	broad.mit.edu	37	chr16	71319826	71319826	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgcacttactcatttTcaaatcaaattaaaatctag	2	9	5	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71319826	G	G	71319826	1	3	35	0	1	0	0	0	0	0	0	0	6150	1798	62	5		5	FTSJD1	16	71319826	5'UTR	SNP	T	TCGA-17-Z000-01A-01W-0746-08	339356	71319826	19034927	298	46084											
VAT1L	57687	broad.mit.edu	37	chr16	77830955	77830955	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgggtgcactaaaggccCggatttcaccattacatagt	10	10	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77830955	A	A	77830955	1	1	35	0	1	0	0	0	0	0	0	0	17257	667	23	1		1	VAT1L	16	77830955	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6511129	77830955	12523798	299	46085											
PLCG2	5336	broad.mit.edu	37	chr16	81941975	81941975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtctagtgatgctgggGtttggtccaaggctttcaga	13	8	2	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81941975	T	T	81941975	1	4	35	0	1	0	0	0	0	0	0	0	12131	1276	44	3		3	PLCG2	16	81941975	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	4111020	81941975	8412778	300	46086											
CDH13	1012	broad.mit.edu	37	chr16	82769391	82769391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaacagcagcgttctgcCaaagaaaagctatttgctgg	11	8	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82769391	A	A	82769391	1	1	35	0	1	0	0	0	0	0	0	0	3129	609	21	2		2	CDH13	16	82769391	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	827416	82769391	7585362	301	46087											
SPG7	6687	broad.mit.edu	37	chr16	89620342	89620342	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgggcggcgccccttcagcCaaggcctgcagcagatgatg	14	14	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89620342	G	G	89620342	3	3	35	1	0	0	0	0	1	0	0	0	15162	595	21	4	2285	4	SPG7	16	89620342	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6850951	89620342	734411	302	46088											
FANCA	2175	broad.mit.edu	37	chr16	89865712	89865712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagaaacaatccccaggCgctttcagacaacagatcca	6	15	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89865712	A	A	89865712	1	1	35	0	1	0	0	0	0	0	0	0	5719	783	27	3		3	FANCA	16	89865712	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	245370	89865712	489041	303	46089											
RPH3AL	9501	broad.mit.edu	37	chr17	123066	123066	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcgagggtgacgtcagggAgagaccccagcgagggtgac	18	10	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123066	T	T	123066	1	4	35	0	1	0	0	0	0	0	0	0	13663	319	11	5		5	RPH3AL	17	123066	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08		123066	81072144	304	46090											
NXN	64359	broad.mit.edu	37	chr17	867249	867249	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcgtgaacccgggaggcGgagcttgcagtgagccgaga	18	9	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	867249	A	A	867249	1	1	35	0	1	0	0	0	0	0	0	0	10882	1131	39	4		4	NXN	17	867249	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	744183	867249	80327961	305	46091											
PRPF8	10594	broad.mit.edu	37	chr17	1582841	1582841	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggctacatgcccacctAgttggagtcttttctcctac	7	12	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1582841	G	G	1582841	1	3	35	0	1	0	0	0	0	0	0	0	12681	435	15	5		5	PRPF8	17	1582841	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	715592	1582841	79612369	306	46092											
TRPV3	162514	broad.mit.edu	37	chr17	3448020	3448020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaatgggccgggtgagGtggctcatgcatgtaatccc	13	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3448020	T	T	3448020	1	4	35	0	1	0	0	0	0	0	0	0	16722	1276	44	3		3	TRPV3	17	3448020	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1865179	3448020	77747190	307	46093											
NLRP1	22861	broad.mit.edu	37	chr17	5415412	5415412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttttgtggttttggtGcatccacaatgtcttcatag	11	6	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5415412	T	T	5415412	1	4	35	0	1	0	0	0	0	0	0	0	10566	1334	46	3		3	NLRP1	17	5415412	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1967392	5415412	75779798	308	46094											
ALOX12	239	broad.mit.edu	37	chr17	6908420	6908420	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcccaactcacagggaagTtggagagcacaagagtgagt	15	8	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6908420	C	C	6908420	1	2	35	0	1	0	0	0	0	0	0	0	536	1740	60	5		5	ALOX12	17	6908420	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	1493008	6908420	74286790	309	46095											
MYH8	4626	broad.mit.edu	37	chr17	10317637	10317637	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcacagaattcagggcataCattttacattagacattgtt	7	7	2	2	rs144988395	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10317637	T	T	10317637	1	4	35	0	1	0	0	0	0	0	0	0	10135	493	17	4		4	MYH8	17	10317637	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	3409217	10317637	70877573	310	46096											
MYH2	4620	broad.mit.edu	37	chr17	10450895	10450895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatcttgtcatatttgggaGggttcatggggaagacctga	14	6	3	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10450895	T	T	10450895	3	4	35	1	0	0	0	0	1	0	0	0	10129	1000	35	2	5728	2	MYH2	17	10450895	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	133258	10450895	70744315	311	46097											
COX10	1352	broad.mit.edu	37	chr17	14080573	14080573	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagctgtgcttccttgGgagtgtgccaagcatttact	13	9	0	1	rs2260450		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14080573	A	A	14080573	1	1	35	0	1	0	0	0	0	0	0	0	3794	1247	43	4		4	COX10	17	14080573	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3629678	14080573	67114637	312	46098											
SPAG5	10615	broad.mit.edu	37	chr17	26906970	26906970	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtggacatcttcaacagcaGaagatatcaggagcagcgtc	12	9	3	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906970	A	A	26906970	1	1	35	0	1	0	0	0	0	0	0	0	15097	957	33	4		4	SPAG5	17	26906970	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	12826397	26906970	54288240	313	46099											
STAT3	6774	broad.mit.edu	37	chr17	40474456	40474456	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgatgatttcagcaaatgAcatgttgttcagctgctgct	9	8	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40474456	G	G	40474456	3	3	35	1	0	0	0	0	1	0	0	0	15384	275	10	5	383	5	STAT3	17	40474456	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	13567486	40474456	40720754	314	46100											
SLC4A1	6521	broad.mit.edu	37	chr17	42334704	42334704	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgtgtgcattaacatccCcataggcccccaccttgatc	6	17	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42334704	T	T	42334704	1	4	35	0	1	0	0	0	0	0	0	0	14764	638	22	4		4	SLC4A1	17	42334704	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1860248	42334704	38860506	315	46101											
EXOC7	23265	broad.mit.edu	37	chr17	74097948	74097948	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgataagatagacacctgCgggagggaagcctcttgatc	13	8	1	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74097948	G	G	74097948	1	3	35	0	1	0	0	0	0	0	0	0	5352	783	27	4		4	EXOC7	17	74097948	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	31763244	74097948	7097262	316	46102											
TBC1D16	125058	broad.mit.edu	37	chr17	77922923	77922923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttccctggacgggagctgGgcggctgctgccggctgcag	18	13	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77922923	A	A	77922923	1	1	35	0	1	0	0	0	0	0	0	0	15724	1247	43	4		4	TBC1D16	17	77922923	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3824975	77922923	3272287	317	46103											
PIAS2	9063	broad.mit.edu	37	chr18	44426825	44426825	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctataaccgtaagaaagaaaAattatttcaaatcatctgca	4	7	3	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44426825	C	C	44426825	1	2	35	0	1	0	0	0	0	0	0	0	11971	29	1	5		5	PIAS2	18	44426825	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08		44426825	33650423	318	46104											
CCDC102B	79839	broad.mit.edu	37	chr18	66419441	66419441	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgggaagcagaggttgcagtGagccaagatcgcgccactgc	15	11	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66419441	A	A	66419441	1	1	35	0	1	0	0	0	0	0	0	0	2763	1305	45	4		4	CCDC102B	18	66419441	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	21992616	66419441	11657807	319	46105											
ZNF516	9658	broad.mit.edu	37	chr18	74092262	74092262	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcggcgcggctgtccccctAgaggaggcaaaatatgaaac	13	11	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74092262	C	C	74092262	1	2	35	0	1	0	0	0	0	0	0	0	18087	435	15	5		5	ZNF516	18	74092262	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08	7672821	74092262	3984986	320	46106											
SAFB	6294	broad.mit.edu	37	chr19	5641732	5641733	+	Intron	DNP	CG	TT	TT													gtggcggtcacatgatggttCggtctggttgtgtcacagga							TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	5641733	TT	TT	5641732	1	4	35	0	1	0	0	0	0	0	0	0	13917	899	31	4		4	SAFB	19	5641732	Intron	DNP	CG	TCGA-17-Z000-01A-01W-0746-08		5641732	53487251	321	46107											
MUC16	94025	broad.mit.edu	37	chr19	9072492	9072492	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatggtaaaagtatcctgtGatgtagccccatgaggacct	10	10	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9072492	T	T	9072492	4	4	35	1	0	0	0	0	0	1	0	0	10067	1294	45	3	28897	3	MUC16	19	9072492	Nonsense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3430760	9072492	50056491	322	46108											
OR7E24	26648	broad.mit.edu	37	chr19	9361929	9361929	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctggctgtcagctctgaCtcccacctccacacccccat	5	20	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9361929	T	T	9361929	2	4	35	1	0	0	0	0	0	0	0	1	11315	564	20	4		4	OR7E24	19	9361929	Silent	SNP	C	TCGA-17-Z000-01A-01W-0746-08	289437	9361929	49767054	323	46109											
FBXL12	54850	broad.mit.edu	37	chr19	9931118	9931118	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccctctggacaagtggcTggccctgcactcatgagggc	14	13	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9931118	G	G	9931118	1	3	35	0	1	0	0	0	0	0	0	0	5765	1595	55	5		5	FBXL12	19	9931118	5'Flank	SNP	T	TCGA-17-Z000-01A-01W-0746-08	569189	9931118	49197865	324	46110											
AP1M2	10053	broad.mit.edu	37	chr19	10691874	10691874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggctgcgattctcttaagTccccacgtggggcgggtttg	15	11	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10691874	A	A	10691874	1	1	35	0	1	0	0	0	0	0	0	0	737	1682	58	5		5	AP1M2	19	10691874	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	760756	10691874	48437109	325	46111											
SMARCA4	6597	broad.mit.edu	37	chr19	11169030	11169030	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgcaagcccgtggacttcaaGaagataaaggtaaccctgac	10	11	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11169030	C	C	11169030	3	2	35	1	0	0	0	0	1	0	0	0	14884	933	33	4	4751	4	SMARCA4	19	11169030	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	477156	11169030	47959953	326	46112											
ZNF676	163223	broad.mit.edu	37	chr19	22362404	22362404	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatgaaaagctttgccacGtttttcacatttgtagggct	8	8	1	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22362404	T	T	22362404	1	4	35	0	1	0	0	0	0	0	0	0	18210	1160	40	3		3	ZNF676	19	22362404	3'UTR	SNP	G	TCGA-17-Z000-01A-01W-0746-08	11193374	22362404	36766579	327	46113											
ZNF254	9534	broad.mit.edu	37	chr19	24309364	24309364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaaatgtaaaaaacgtGtcaaattattttgcatgctt	5	6	2	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24309364	T	T	24309364	3	4	35	1	0	0	0	0	1	0	0	0	17924	1377	48	3	576	3	ZNF254	19	24309364	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1946960	24309364	34819619	328	46114											
HPN	3249	broad.mit.edu	37	chr19	35551526	35551526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccctccacccctttccctGgtaggcggaaccgggtcctg	10	18	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35551526	T	T	35551526	1	4	35	0	1	0	0	0	0	0	0	0	7403	1363	47	2		2	HPN	19	35551526	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	11242162	35551526	23577457	329	46115											
APLP1	333	broad.mit.edu	37	chr19	36369895	36369895	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtacctaggggaagagaccaGaggtcagcggccaggctgtg	17	9	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36369895	A	A	36369895	1	1	35	0	1	0	0	0	0	0	0	0	780	957	33	4		4	APLP1	19	36369895	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	818369	36369895	22759088	330	46116											
FBXO17	115290	broad.mit.edu	37	chr19	39433138	39433138	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgaactcccgagctccaGtgatcctcccacctcggcct	7	18	1	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39433138	T	T	39433138	1	4	35	0	1	0	0	0	0	0	0	0	5787	1044	36	3		3	FBXO17	19	39433138	3'UTR	SNP	G	TCGA-17-Z000-01A-01W-0746-08	3063243	39433138	19695845	331	46117											
DMPK	1760	broad.mit.edu	37	chr19	46283080	46283080	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccttcagaatctcgaagtCgtccctctgcagtcggacct	8	15	3	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46283080	T	T	46283080	3	4	35	1	0	0	0	0	1	0	0	0	4624	884	31	4	1744	4	DMPK	19	46283080	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	6849942	46283080	12845903	332	46118											
DMWD	1762	broad.mit.edu	37	chr19	46287967	46287967	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgggcctcggtctcctcgtCtgtgaactacggagacagag	13	12	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46287967	T	T	46287967	3	4	35	1	0	0	0	0	1	0	0	0	4633	913	32	4	123	4	DMWD	19	46287967	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	4887	46287967	12841016	333	46119											
DMWD	1762	broad.mit.edu	37	chr19	46289604	46289604	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctgctgtcgccgcctcctCtgcccttgtggtgtaggggt	15	13	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46289604	G	G	46289604	3	3	35	1	0	0	0	0	1	0	0	0	4633	922	32	4	886	4	DMWD	19	46289604	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	1637	46289604	12839379	334	46120											
ZNF813	126017	broad.mit.edu	37	chr19	53994808	53994808	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaaaccctacaagtGtactgagtgtgtcaagacgt	12	7	1	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53994808	C	C	53994808	3	2	35	1	0	0	0	0	1	0	0	0	18304	1377	48	4	1332	4	ZNF813	19	53994808	Missense_Mutation	SNP	G	TCGA-17-Z000-01A-01W-0746-08	7705204	53994808	5134175	335	46121											
LILRB2	10288	broad.mit.edu	37	chr19	54782478	54782478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagctgagacctccccaGgcctctctaggagcctctgt	10	15	3	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54782478	T	T	54782478	1	4	35	0	1	0	0	0	0	0	0	0	8863	1015	35	2		2	LILRB2	19	54782478	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	787670	54782478	4346505	336	46122											
LILRA2	11027	broad.mit.edu	37	chr19	55085394	55085394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcggtgagatttgaagaGggaggggagcttctaaccta	15	6	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55085394	T	T	55085394	1	4	35	0	1	0	0	0	0	0	0	0	8857	1015	35	2		2	LILRA2	19	55085394	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	302916	55085394	4043589	337	46123											
NLRP5	126206	broad.mit.edu	37	chr19	56552450	56552450	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttccccactgtagtctgcaGaggctgatgtgagtctggct	12	11	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56552450	A	A	56552450	2	1	35	1	0	0	0	0	0	0	0	1	10575	933	33	4		4	NLRP5	19	56552450	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08	1467056	56552450	2576533	338	46124											
RSPO4	343637	broad.mit.edu	37	chr20	950980	950980	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctacttccccagtcctcacCttctgttccttagattcggt	6	15	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	950980	G	G	950980	1	3	35	0	1	0	0	0	0	0	0	0	13823	696	24	4		4	RSPO4	20	950980	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08		950980	62074540	339	46125											
SNAP25	6616	broad.mit.edu	37	chr20	10277482	10277482	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgacttaaaactcattcgcTtggttcgattcttcgcttga	7	10	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10277482	C	C	10277482	1	2	35	0	1	0	0	0	0	0	0	0	14944	1624	56	5		5	SNAP25	20	10277482	Intron	SNP	T	TCGA-17-Z000-01A-01W-0746-08	9326502	10277482	52748038	340	46126											
BAGE2	85319	broad.mit.edu	37	chr21	11057399	11057399	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagactgaataaaatatcAtggaggtttcataataagat	7	3	2	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11057399	G	G	11057399	1	3	35	0	1	0	0	0	0	0	0	0	1297	232	8	5		5	BAGE2	21	11057399	Intron	SNP	A	TCGA-17-Z000-01A-01W-0746-08		11057399	37072496	341	46127											
SEZ6L	23544	broad.mit.edu	37	chr22	26611251	26611251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttacacaggtgttacatGcacaatggtggaggttagac	12	6	0	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26611251	T	T	26611251	1	4	35	0	1	0	0	0	0	0	0	0	14256	1334	46	3		3	SEZ6L	22	26611251	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08		26611251	24693315	342	46128											
TFIP11	24144	broad.mit.edu	37	chr22	26899579	26899579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagggataaatgaacagCcattagaaatggacaggaca	11	5	0	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26899579	T	T	26899579	1	4	35	0	1	0	0	0	0	0	0	0	15930	754	26	4		4	TFIP11	22	26899579	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	288328	26899579	24404987	343	46129											
SBF1	6305	broad.mit.edu	37	chr22	50903328	50903328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccgcccgcatccttgCcacctcgtgggccaccagct	8	20	1	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50903328	A	A	50903328	3	1	35	1	0	0	0	0	1	0	0	0	13970	739	26	3	4446	3	SBF1	22	50903328	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	24003749	50903328	401238	344	46130											
SHOX	6473	broad.mit.edu	37	chrX	591647	591647	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccatggaagagctcacGgcttttgtatccaagtcttt	9	11	2	1			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	591647	C	C	591647	2	2	35	1	0	0	0	0	0	0	0	1	14401	1103	39	4		4	SHOX	23	591647	Silent	SNP	G	TCGA-17-Z000-01A-01W-0746-08		591647	154678913	345	46131											
FRMPD4	9758	broad.mit.edu	37	chrX	12736345	12736345	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagggaaggaagaaggagctCctgatggagaaaccagtgat	15	5	0	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12736345	T	T	12736345	3	4	35	1	0	0	0	0	1	0	0	0	6119	855	30	4	3462	4	FRMPD4	23	12736345	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	12144698	12736345	142534215	346	46132											
KDM5C	8242	broad.mit.edu	37	chrX	53231148	53231148	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgcacactggtttgtgCggacaacctgaagaacacaa	9	12	0	2			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53231148	T	T	53231148	3	4	35	1	0	0	0	0	1	0	0	0	8205	768	27	4	3082	4	KDM5C	23	53231148	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	40494803	53231148	102039412	347	46133											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	35	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-17-Z000-01A-01W-0746-08	421699	53652847	101617713	348	46134											
MAGEE2	139599	broad.mit.edu	37	chrX	75003939	75003939	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagccaactggaccaaatcAtttgccttatcattcatagt	5	10	3	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75003939	T	T	75003939	3	4	35	1	0	0	0	0	1	0	0	0	9278	214	8	5	627	5	MAGEE2	23	75003939	Missense_Mutation	SNP	A	TCGA-17-Z000-01A-01W-0746-08	21351092	75003939	80266621	349	46135											
PCDH11X	27328	broad.mit.edu	37	chrX	91715542	91715542	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggagctgctgagatgacGctcacagagctgagacgtac	14	9	1	4			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91715542	C	C	91715542	1	2	35	0	1	0	0	0	0	0	0	0	11602	1102	38	4		4	PCDH11X	23	91715542	Intron	SNP	G	TCGA-17-Z000-01A-01W-0746-08	16711603	91715542	63555018	350	46136											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105010959	105010959	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttctgtgatttgtagcaTacatggaagatctcacaaga	8	7	3	3			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105010959	C	C	105010959	3	2	35	1	0	0	0	0	1	0	0	0	7732	1406	49	5	1404	5	IL1RAPL2	23	105010959	Missense_Mutation	SNP	T	TCGA-17-Z000-01A-01W-0746-08	13295417	105010959	50259601	351	46137											
DCX	1641	broad.mit.edu	37	chrX	110644336	110644336	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttgttcagaagcacaCgcacagccttccgaggcttc	8	14	3	1	rs56030372		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110644336	T	T	110644336	3	4	35	1	0	0	0	0	1	0	0	0	4351	536	19	4	530	4	DCX	23	110644336	Missense_Mutation	SNP	C	TCGA-17-Z000-01A-01W-0746-08	5633377	110644336	44626224	352	46138											
BCAP31	10134	broad.mit.edu	37	chrX	152966488	152966488	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtccactcctcccctgcCacctccagccccatgcccca	6	24	0	0			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152966488	A	A	152966488	1	1	35	0	1	0	0	0	0	0	0	0	1352	609	21	2		2	BCAP31	23	152966488	Intron	SNP	C	TCGA-17-Z000-01A-01W-0746-08	42322152	152966488	2304072	353	46139											
CHD5	26038	broad.mit.edu	37	chr1	6186602	6186602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctccgcctctgggtgagGggcaccagtccctccctccc	10	20	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6186602	T	T	6186602	1	4	36	0	1	0	0	0	0	0	0	0	3359	1247	43	2		2	CHD5	1	6186602	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08		6186602	243064019	1	46140											
RERE	473	broad.mit.edu	37	chr1	8674657	8674657	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcttcagaaagatgctgtGgtggctgtgatgccaccggc	15	10	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8674657	A	A	8674657	3	1	36	1	0	0	0	0	1	0	0	0	13339	1348	47	4	4295	4	RERE	1	8674657	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2488055	8674657	240575964	2	46141											
PTCHD2	57540	broad.mit.edu	37	chr1	11585275	11585275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaaagtgaagagtcaagGccaccccgctgtctacaggc	10	13	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11585275	T	T	11585275	3	4	36	1	0	0	0	0	1	0	0	0	12839	1203	42	3	2561	3	PTCHD2	1	11585275	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2910618	11585275	237665346	3	46142											
PADI6	353238	broad.mit.edu	37	chr1	17699526	17699526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgtttgtgccctgacGcgtgtctcttaccgggcaaa	13	10	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17699526	T	T	17699526	1	4	36	0	1	0	0	0	0	0	0	0	11475	1102	38	3		3	PADI6	1	17699526	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6114251	17699526	231551095	4	46143											
WDTC1	23038	broad.mit.edu	37	chr1	27614294	27614294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaccgggtgaagcgcatcGccacagcgcccatgtggccc	12	16	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27614294	T	T	27614294	3	4	36	1	0	0	0	0	1	0	0	0	17469	1087	38	3	439	3	WDTC1	1	27614294	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	9914768	27614294	221636327	5	46144											
SNRNP40	9410	broad.mit.edu	37	chr1	31740734	31740734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctgtcggctgagccagCtgctattttgcttccatcag	9	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31740734	A	A	31740734	3	1	36	1	0	0	0	0	1	0	0	0	14970	797	28	3	181	3	SNRNP40	1	31740734	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4126440	31740734	217509887	6	46145											
BAI2	576	broad.mit.edu	37	chr1	32207610	32207610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgggcccaggtaccccCatggtcagagctgcaacttg	13	12	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32207610	A	A	32207610	1	1	36	0	1	0	0	0	0	0	0	0	1304	609	21	2		2	BAI2	1	32207610	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	466876	32207610	217043011	7	46146											
CSMD2	114784	broad.mit.edu	37	chr1	34190025	34190025	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcccaaccttcgctgatGgggtgagggagtcagtggtc	15	9	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34190025	A	A	34190025	1	1	36	0	1	0	0	0	0	0	0	0	3979	1363	47	4		4	CSMD2	1	34190025	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1982415	34190025	215060596	8	46147											
TIE1	7075	broad.mit.edu	37	chr1	43774003	43774003	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggggactcaggtttgggtGccaggacagtggagtagggg	20	5	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43774003	A	A	43774003	1	1	36	0	1	0	0	0	0	0	0	0	16016	1334	46	4		4	TIE1	1	43774003	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	9583978	43774003	205476618	9	46148											
TIE1	7075	broad.mit.edu	37	chr1	43774757	43774757	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagggaaccccttccccgtGcggggcagcatagagctacg	14	14	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43774757	A	A	43774757	2	1	36	1	0	0	0	0	0	0	0	1	16016	1306	46	4		4	TIE1	1	43774757	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	754	43774757	205475864	10	46149											
SCP2	6342	broad.mit.edu	37	chr1	53460906	53460906	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtggtgcctccacccaAagtgtctgacaccgtggtcg	12	13	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53460906	T	T	53460906	1	4	36	0	1	0	0	0	0	0	0	0	14047	29	1	5		5	SCP2	1	53460906	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	9686149	53460906	195789715	11	46150											
DMRTB1	63948	broad.mit.edu	37	chr1	53927147	53927147	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcttgcgttctttagtGcgccctctgaacatcaaccc	7	15	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53927147	T	T	53927147	2	4	36	1	0	0	0	0	0	0	0	1	4630	1333	46	3		3	DMRTB1	1	53927147	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	466241	53927147	195323474	12	46151											
DAB1	1600	broad.mit.edu	37	chr1	58712269	58712269	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcatagatgtgagtgtgtGtgaggctgcatatgatgtgt	16	3	0	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58712269	A	A	58712269	1	1	36	0	1	0	0	0	0	0	0	0	4250	1392	48	4		4	DAB1	1	58712269	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4785122	58712269	190538352	13	46152											
ASB17	127247	broad.mit.edu	37	chr1	76397586	76397586	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattattacctccatatcaGtgccaggttacaacttctgt	5	10	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76397586	A	A	76397586	2	1	36	1	0	0	0	0	0	0	0	1	1025	1020	36	4		4	ASB17	1	76397586	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	17685317	76397586	172853035	14	46153											
USP33	23032	broad.mit.edu	37	chr1	78204952	78204952	+	Frame_Shift_Del	DEL	G	-	-													gtggatctagattattacctGgacactgttttcttgtattt							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78204952	-	-	78204952	7	5	36	1	0	1	0	1	0	0	0	0	17191	1357	47	0	2478	0	USP33	1	78204952	Frame_Shift_Del	DEL	G	TCGA-17-Z001-01A-01W-0746-08	1807366	78204952	171045669	15	46154											
DNASE2B	58511	broad.mit.edu	37	chr1	84880404	84880404	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtggtgtatttcccaaaaGggcaccaaaaatcgctggac	10	9	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84880404	A	A	84880404	2	1	36	1	0	0	0	0	0	0	0	1	4705	991	35	4		4	DNASE2B	1	84880404	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6675452	84880404	164370217	16	46155											
GBP5	115362	broad.mit.edu	37	chr1	89732239	89732239	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctgtatacacagacgggGcaaattgaaattttgaactc	8	8	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89732239	C	C	89732239	3	2	36	1	0	0	0	0	1	0	0	0	6339	1203	42	4	1126	4	GBP5	1	89732239	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4851835	89732239	159518382	17	46156											
BRDT	676	broad.mit.edu	37	chr1	92447221	92447221	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgaaaatgtttcccgactGagtgagagcagcagcagcag	13	8	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92447221	A	A	92447221	2	1	36	1	0	0	0	0	0	0	0	1	1517	1277	45	4		4	BRDT	1	92447221	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2714982	92447221	156803400	18	46157											
COL11A1	1301	broad.mit.edu	37	chr1	103487243	103487243	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attttaccaacctttaaagtGtattcacactactacttaca	2	10	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103487243	C	C	103487243	1	2	36	0	1	0	0	0	0	0	0	0	3699	1392	48	4		4	COL11A1	1	103487243	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	11040022	103487243	145763378	19	46158											
SLC6A17	388662	broad.mit.edu	37	chr1	110741154	110741154	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttgaggtggccaccagGcccaggccaggccctttgcc	12	15	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110741154	T	T	110741154	1	4	36	0	1	0	0	0	0	0	0	0	14794	1218	42	3		3	SLC6A17	1	110741154	3'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7253911	110741154	138509467	20	46159											
KCNA2	3737	broad.mit.edu	37	chr1	111146103	111146103	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggatgggatctttggacaGcttgtcacttgcaagtattg	13	6	2	0	rs141901988		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111146103	A	A	111146103	2	1	36	1	0	0	0	0	0	0	0	1	8073	962	34	4		4	KCNA2	1	111146103	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	404949	111146103	138104518	21	46160											
WNT2B	7482	broad.mit.edu	37	chr1	113033704	113033704	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaacaagtgtttgcaaagGtacatgataattaaaatgtc	7	5	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113033704	T	T	113033704	5	4	36	1	0	0	0	0	0	0	1	0	17514	1275	44	3	132	3	WNT2B	1	113033704	Splice_Site	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1887601	113033704	136216917	22	46161											
HAO2	51179	broad.mit.edu	37	chr1	119935233	119935233	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctgtctgtctgcctcGggagcagggtgaacatggtg	15	9	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119935233	A	A	119935233	1	1	36	0	1	0	0	0	0	0	0	0	7018	1131	39	4		4	HAO2	1	119935233	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6901529	119935233	129315388	23	46162											
NOTCH2	4853	broad.mit.edu	37	chr1	120466412	120466412	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgtggagcagggtaccCagtgcccgcaagaagctgcg	16	10	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120466412	A	A	120466412	2	1	36	1	0	0	0	0	0	0	0	1	10643	581	21	2		2	NOTCH2	1	120466412	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	531179	120466412	128784209	24	46163											
NBPF9	400818	broad.mit.edu	37	chr1	144596243	144596243	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtgttaaccttataacAattttattttagtttttgca	4	5	1	0	rs75225589		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144596243	G	G	144596243	1	3	36	0	1	0	0	0	0	0	0	0	10294	145	5	5		5	NBPF9	1	144596243	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	24129831	144596243	104654378	25	46164											
NBPF10	100132406	broad.mit.edu	37	chr1	145290003	145290003	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcagcgggtccccaaactGactgcacatctgagtcatgt	9	12	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145290003	A	A	145290003	1	1	36	0	1	0	0	0	0	0	0	0	10287	1305	45	4		4	NBPF10	1	145290003	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	693760	145290003	103960618	26	46165											
PRUNE	58497	broad.mit.edu	37	chr1	150998086	150998086	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaactagaggcccttttcCcagacctacccaagagaaat	7	12	0	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150998086	G	G	150998086	3	3	36	1	0	0	0	0	1	0	0	0	12746	623	22	4	634	4	PRUNE	1	150998086	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5708083	150998086	98252535	27	46166											
SEMA6C	10500	broad.mit.edu	37	chr1	151107786	151107786	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccgcttcccactgcacCtagggtgaggccagaaggaa	12	13	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151107786	A	A	151107786	5	1	36	1	0	0	0	0	0	0	1	0	14154	695	24	2	1479	2	SEMA6C	1	151107786	Splice_Site	SNP	C	TCGA-17-Z001-01A-01W-0746-08	109700	151107786	98142835	28	46167											
HRNR	388697	broad.mit.edu	37	chr1	152191897	152191897	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgttgttcactcctagaTgactgtcctgacctagagcc	9	13	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152191897	A	A	152191897	2	1	36	1	0	0	0	0	0	0	0	1	7426	1451	51	5		5	HRNR	1	152191897	Silent	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1084111	152191897	97058724	29	46168											
DCST1	149095	broad.mit.edu	37	chr1	155011886	155011886	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctcctgacaggcttgggGgccatgggctgggggacctc	17	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155011886	T	T	155011886	2	4	36	1	0	0	0	0	0	0	0	1	4335	1219	43	2		2	DCST1	1	155011886	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2819989	155011886	94238735	30	46169											
ADAM15	8751	broad.mit.edu	37	chr1	155034269	155034270	+	Intron	DEL	CC	-	-													tgcgcatgccctcattctctCctgccccctggctgactttg							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155034270	-	-	155034269	6	5	36	0	1	1	0	1	0	0	0	0	237	870	30	0		0	ADAM15	1	155034269	Intron	DEL	CC	TCGA-17-Z001-01A-01W-0746-08	22383	155034269	94216352	31	46170											
YY1AP1	55249	broad.mit.edu	37	chr1	155637695	155637698	+	Intron	DEL	ATAC	-	-													aagagcgaaactccatctcaAtacatacatacatacataca					rs111381393		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155637698	-	-	155637695	6	5	36	0	1	1	0	1	0	0	0	0	17635	116	4	0		0	YY1AP1	1	155637695	Intron	DEL	ATAC	TCGA-17-Z001-01A-01W-0746-08	603426	155637695	93612926	32	46171											
SPTA1	6708	broad.mit.edu	37	chr1	158612135	158612135	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatacaataaattaaaaAaaaagaaagagtaaatgatt	4	1	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158612135	G	G	158612135	1	3	36	0	1	0	0	0	0	0	0	0	15234	29	1	5		5	SPTA1	1	158612135	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2974440	158612135	90638486	33	46172											
FCER1A	2205	broad.mit.edu	37	chr1	159272598	159272598	+	Intron	DEL	A	-	-													gattctagtcctctggagatAaagaagactgctggacacta							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159272598	-	-	159272598	6	5	36	0	1	1	0	1	0	0	0	0	5831	377	13	0		0	FCER1A	1	159272598	Intron	DEL	A	TCGA-17-Z001-01A-01W-0746-08	660463	159272598	89978023	34	46173											
IGSF9	57549	broad.mit.edu	37	chr1	159912758	159912758	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggagaactcttacccacgTaatcagggtcaattcgggga	12	9	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159912758	A	A	159912758	3	1	36	1	0	0	0	0	1	0	0	0	7675	1638	57	5	3373	5	IGSF9	1	159912758	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	640160	159912758	89337863	35	46174											
LY9	4063	broad.mit.edu	37	chr1	160783558	160783558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggaccccaagggaacCccatgcttctgagtccaatg	10	14	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160783558	A	A	160783558	3	1	36	1	0	0	0	0	1	0	0	0	9189	623	22	2	729	2	LY9	1	160783558	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	870800	160783558	88467063	36	46175											
RCSD1	92241	broad.mit.edu	37	chr1	167658093	167658093	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acactatggggagatccctcCtctgccttggcctctgtcca	9	15	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167658093	G	G	167658093	1	3	36	0	1	0	0	0	0	0	0	0	13293	696	24	4		4	RCSD1	1	167658093	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6874535	167658093	81592528	37	46176											
C1orf129	80133	broad.mit.edu	37	chr1	170927197	170927197	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgacctcgtggtccccccGcctcggcctcccaaagtgct	9	20	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170927197	A	A	170927197	1	1	36	0	1	0	0	0	0	0	0	0	2016	1102	38	4		4	C1orf129	1	170927197	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3269104	170927197	78323424	38	46177											
TNR	7143	broad.mit.edu	37	chr1	175372257	175372257	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacccttgccaaacaccccAgagagttcccctgcctacct	5	20	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175372257	C	C	175372257	1	2	36	0	1	0	0	0	0	0	0	0	16461	203	7	5		5	TNR	1	175372257	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	4445060	175372257	73878364	39	46178											
TNR	7143	broad.mit.edu	37	chr1	175536734	175536734	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatgttcatgtcatatcAagaactctttctatctaagg	7	7	6	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175536734	G	G	175536734	1	3	36	0	1	0	0	0	0	0	0	0	16461	145	5	5		5	TNR	1	175536734	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	164477	175536734	73713887	40	46179											
SMG7	9887	broad.mit.edu	37	chr1	183485194	183485194	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccgagactttaaaacagtTtggttcgttatttatttttc	6	7	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183485194	G	G	183485194	1	3	36	0	1	0	0	0	0	0	0	0	14912	1856	64	5		5	SMG7	1	183485194	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	7948460	183485194	65765427	41	46180											
FMOD	2331	broad.mit.edu	37	chr1	203175009	203175009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcccaagtaaggtcataCgaactaaggctacagcttgg	12	9	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203175009	A	A	203175009	1	1	36	0	1	0	0	0	0	0	0	0	6017	551	19	3		3	FMOD	1	203175009	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	19689815	203175009	46075612	42	46181											
CDC42BPA	8476	broad.mit.edu	37	chr1	227381578	227381578	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttcaggcaatctatcttCaaatttgctgagtagagtaa	7	7	5	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227381578	A	A	227381578	4	1	36	1	0	0	0	0	0	1	0	0	3102	835	29	3	4779	3	CDC42BPA	1	227381578	Nonsense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	24206569	227381578	21869043	43	46182											
GUK1	2987	broad.mit.edu	37	chr1	228335158	228335158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgcatctgtgtgctggaCgtggacctgcagggtgtgcg	16	10	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228335158	A	A	228335158	3	1	36	1	0	0	0	0	1	0	0	0	6965	535	19	3	384	3	GUK1	1	228335158	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	953580	228335158	20915463	44	46183											
URB2	9816	broad.mit.edu	37	chr1	229772543	229772543	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgggatggccaagttgGgatggtgagtggactcacat	15	7	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229772543	T	T	229772543	3	4	36	1	0	0	0	0	1	0	0	0	17151	1232	43	2	2193	2	URB2	1	229772543	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1437385	229772543	19478078	45	46184											
PGBD5	79605	broad.mit.edu	37	chr1	230505363	230505364	+	Intron	INS	-	GA	GA													aggccctctgtgcttactccINSgtgtctgtgtgtgtgctggg					rs10624752		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	230505364	GA	GA	230505363	6	5	36	0	1	1	1	0	0	0	0	0	11879	667	23	0		0	PGBD5	1	230505363	Intron	INS	-	TCGA-17-Z001-01A-01W-0746-08	732820	230505363	18745258	46	46185											
ARID4B	51742	broad.mit.edu	37	chr1	235459477	235459477	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagaaagtcaacaacattcTtgtgttcactgtggatgtca	8	8	4	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235459477	A	A	235459477	1	1	36	0	1	0	0	0	0	0	0	0	922	1624	56	5		5	ARID4B	1	235459477	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	4954114	235459477	13791144	47	46186											
RYR2	6262	broad.mit.edu	37	chr1	237947956	237947956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttgcagcctgctgcttgGgggaagcctcgtcgaaggtg	15	10	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947956	T	T	237947956	3	4	36	1	0	0	0	0	1	0	0	0	13880	1232	43	2	13302	2	RYR2	1	237947956	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2488479	237947956	11302665	48	46187											
RYR2	6262	broad.mit.edu	37	chr1	237993849	237993849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaaatgcttcatctgtgGgataggcaatgattacttcg	10	8	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237993849	T	T	237993849	3	4	36	1	0	0	0	0	1	0	0	0	13880	1232	43	2	15085	2	RYR2	1	237993849	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	45893	237993849	11256772	49	46188											
FMN2	56776	broad.mit.edu	37	chr1	240635683	240635683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatcagagtaaaagaagCcgaagaggtgtgtagacaga	12	8	1	5			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240635683	A	A	240635683	3	1	36	1	0	0	0	0	1	0	0	0	6008	739	26	3	5138	3	FMN2	1	240635683	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2641834	240635683	8614938	50	46189											
TPO	7173	broad.mit.edu	37	chr2	1488349	1488349	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcctgggcctcactgagatGcttttcctatctgcacagat	8	12	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1488349	C	C	1488349	1	2	36	0	1	0	0	0	0	0	0	0	16534	1334	46	4		4	TPO	2	1488349	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08		1488349	241711024	51	46190											
NT5C1B	93034	broad.mit.edu	37	chr2	18757877	18757877	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtccatttccaggaaaGtcaaagctctaaaggacaga	10	8	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18757877	A	A	18757877	1	1	36	0	1	0	0	0	0	0	0	0	10781	1044	36	4		4	NT5C1B	2	18757877	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	17269528	18757877	224441496	52	46191											
APOB	338	broad.mit.edu	37	chr2	21255315	21255315	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcgcagctgctgtgctgaGggctcggggatcagggccac	16	12	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21255315	C	C	21255315	2	2	36	1	0	0	0	0	0	0	0	1	787	987	35	4		4	APOB	2	21255315	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2497438	21255315	221944058	53	46192											
ALK	238	broad.mit.edu	37	chr2	29474042	29474042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgctccccacctccacGctcaggttggagttctggta	9	17	2	0	rs77102810	byFrequency;by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29474042	T	T	29474042	3	4	36	1	0	0	0	0	1	0	0	0	525	1078	38	3	2801	3	ALK	2	29474042	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	8218727	29474042	213725331	54	46193											
BIRC6	57448	broad.mit.edu	37	chr2	32658763	32658763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactacctaaagcttgtatGgttggacatgtggacttcaa	10	7	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32658763	T	T	32658763	3	4	36	1	0	0	0	0	1	0	0	0	1444	1348	47	2	3350	2	BIRC6	2	32658763	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3184721	32658763	210540610	55	46194											
VIT	5212	broad.mit.edu	37	chr2	37041396	37041396	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcattgccactcacccCgccagagaccactccttctt	6	17	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37041396	T	T	37041396	2	4	36	1	0	0	0	0	0	0	0	1	17298	639	23	4		4	VIT	2	37041396	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4382633	37041396	206157977	56	46195											
ABCG8	64241	broad.mit.edu	37	chr2	44071702	44071702	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacagcctgtacttcacctaCagtggccagcccaacaccct	6	17	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44071702	G	G	44071702	4	3	36	1	0	0	0	0	0	1	0	0	72	489	17	4	126	4	ABCG8	2	44071702	Nonsense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	7030306	44071702	199127671	57	46196											
KLRAQ1	129285	broad.mit.edu	37	chr2	48681898	48681898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaggttcaaatacaggCaagttagtgtgaccttgtcg	12	6	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48681898	A	A	48681898	1	1	36	0	1	0	0	0	0	0	0	0	8484	725	25	3		3	KLRAQ1	2	48681898	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4610196	48681898	194517475	58	46197											
NRXN1	9378	broad.mit.edu	37	chr2	50699567	50699567	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catgtacaagttttggtaagGatttgtatgtttctttagct	9	4	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50699567	C	C	50699567	3	2	36	1	0	0	0	0	1	0	0	0	10760	1174	41	4	1705	4	NRXN1	2	50699567	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2017669	50699567	192499806	59	46198											
VRK2	7444	broad.mit.edu	37	chr2	58313620	58313620	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctattccttatgtggtctatGagttaactattgccatgtaa	7	7	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58313620	C	C	58313620	1	2	36	0	1	0	0	0	0	0	0	0	17347	1305	45	4		4	VRK2	2	58313620	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7614053	58313620	184885753	60	46199											
USP34	9736	broad.mit.edu	37	chr2	61433142	61433142	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacacgggtgaatttttcaAgtaacttacctatacaggca	7	8	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61433142	C	C	61433142	1	2	36	0	1	0	0	0	0	0	0	0	17192	87	3	5		5	USP34	2	61433142	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	3119522	61433142	181766231	61	46200											
C2orf86	51057	broad.mit.edu	37	chr2	63631702	63631702	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctctttgtctacacttaCggagtgctccactgtgaaca	10	11	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63631702	T	T	63631702	3	4	36	1	0	0	0	0	1	0	0	0	2223	536	19	4	1360	4	C2orf86	2	63631702	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2198560	63631702	179567671	62	46201											
PROKR1	10887	broad.mit.edu	37	chr2	68872943	68872943	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgttgctcacagcacCacctggccagatggagacca	11	13	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68872943	T	T	68872943	1	4	36	0	1	0	0	0	0	0	0	0	12658	609	21	4		4	PROKR1	2	68872943	5'Flank	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5241241	68872943	174326430	63	46202											
ALMS1	7840	broad.mit.edu	37	chr2	73835701	73835701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagcccagctatataaaaaGgtcagtgggtcctctgtcta	10	10	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73835701	T	T	73835701	3	4	36	1	0	0	0	0	1	0	0	0	535	1014	35	2	12545	2	ALMS1	2	73835701	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4962758	73835701	169363672	64	46203											
CTNNA2	1496	broad.mit.edu	37	chr2	80101178	80101178	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaatttcatgtgtgtgacAgctttcatgtgttacacaca	8	8	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80101178	T	T	80101178	1	4	36	0	1	0	0	0	0	0	0	0	4047	203	7	5		5	CTNNA2	2	80101178	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	6265477	80101178	163098195	65	46204											
ARID5A	10865	broad.mit.edu	37	chr2	97217015	97217015	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccagcttctactgcaagggGacacacggcatcatgtcacc	9	14	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97217015	A	A	97217015	2	1	36	1	0	0	0	0	0	0	0	1	923	1161	41	4		4	ARID5A	2	97217015	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	17115837	97217015	145982358	66	46205											
VWA3B	200403	broad.mit.edu	37	chr2	98846489	98846489	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttctctctctttttttgctcGactttttatctaaatcaaaa	2	9	4	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98846489	C	C	98846489	1	2	36	0	1	0	0	0	0	0	0	0	17368	1073	37	4		4	VWA3B	2	98846489	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1629474	98846489	144352884	67	46206											
CREG2	200407	broad.mit.edu	37	chr2	101971757	101971757	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaattctacttcttctggaGacactgcgatcatctggcca	7	12	5	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101971757	T	T	101971757	3	4	36	1	0	0	0	0	1	0	0	0	3897	942	33	3	197	3	CREG2	2	101971757	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3125268	101971757	141227616	68	46207											
RANBP2	5903	broad.mit.edu	37	chr2	109380884	109380884	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcagcactttttaaatgcAagtttgaagaagcccagagc	9	8	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109380884	T	T	109380884	4	4	36	1	0	0	0	0	0	1	0	0	13136	131	5	5	3967	5	RANBP2	2	109380884	Nonsense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	7409127	109380884	133818489	69	46208											
DPP10	57628	broad.mit.edu	37	chr2	116497209	116497209	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttaataaaattcaatacacAgtctagaaaatataggtgta	6	4	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116497209	T	T	116497209	1	4	36	0	1	0	0	0	0	0	0	0	4767	203	7	5		5	DPP10	2	116497209	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	7116325	116497209	126702164	70	46209											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521610	125521610	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcttacctccactttcctAccttccatgcggaattcagt	4	16	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125521610	G	G	125521610	3	3	36	1	0	0	0	0	1	0	0	0	3682	391	14	5	2478	5	CNTNAP5	2	125521610	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	9024401	125521610	117677763	71	46210											
MYO7B	4648	broad.mit.edu	37	chr2	128394193	128394193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggttctgctcatccaccCcaagaccaaggtagctgctg	11	13	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128394193	A	A	128394193	3	1	36	1	0	0	0	0	1	0	0	0	10177	623	22	2	6293	2	MYO7B	2	128394193	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2872583	128394193	114805180	72	46211											
ARHGEF4	50649	broad.mit.edu	37	chr2	131687407	131687407	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccttttttctaggagcaaTgtatcagcaaaatcttgcct	6	10	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131687407	A	A	131687407	1	1	36	0	1	0	0	0	0	0	0	0	910	1479	51	5		5	ARHGEF4	2	131687407	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3293214	131687407	111511966	73	46212											
GPR39	2863	broad.mit.edu	37	chr2	133214119	133214119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgctgtttattttgcccGttcattgatgcagtttcttc	8	8	2	1	rs139715767	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133214119	T	T	133214119	1	4	36	0	1	0	0	0	0	0	0	0	6758	1160	40	3		3	GPR39	2	133214119	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1526712	133214119	109985254	74	46213											
LCT	3938	broad.mit.edu	37	chr2	136555719	136555719	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcccatgaactgcgggtagGgtgggggagacagcccaggc	17	11	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136555719	C	C	136555719	1	2	36	0	1	0	0	0	0	0	0	0	8765	1247	43	4		4	LCT	2	136555719	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3341600	136555719	106643654	75	46214											
LRP1B	53353	broad.mit.edu	37	chr2	141092240	141092240	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcagaatcaccccagagtCtcttaaaaagagtcaactca	5	13	5	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141092240	T	T	141092240	1	4	36	0	1	0	0	0	0	0	0	0	9042	928	32	4		4	LRP1B	2	141092240	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4536521	141092240	102107133	76	46215											
LRP1B	53353	broad.mit.edu	37	chr2	141242937	141242937	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaggatctaaagacaagtCtctgggaaacttcagccttt	9	8	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141242937	A	A	141242937	3	1	36	1	0	0	0	0	1	0	0	0	9042	913	32	3	4531	3	LRP1B	2	141242937	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	150697	141242937	101956436	77	46216											
LRP1B	53353	broad.mit.edu	37	chr2	141625751	141625751	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagttttcatgtctttataGatggtttttctcccagcacc	6	11	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141625751	T	T	141625751	2	4	36	1	0	0	0	0	0	0	0	1	9042	932	33	3		3	LRP1B	2	141625751	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	382814	141625751	101573622	78	46217											
KYNU	8942	broad.mit.edu	37	chr2	143742809	143742809	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acattgactttaatctgaagGagaaactgggtctgtgggcc	12	7	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143742809	C	C	143742809	1	2	36	0	1	0	0	0	0	0	0	0	8659	1189	41	4		4	KYNU	2	143742809	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2117058	143742809	99456564	79	46218											
ARHGAP15	55843	broad.mit.edu	37	chr2	144313963	144313963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctaatataaaatatgcCcttttgtcttcaggtctaga	7	7	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144313963	A	A	144313963	1	1	36	0	1	0	0	0	0	0	0	0	868	638	22	2		2	ARHGAP15	2	144313963	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	571154	144313963	98885410	80	46219											
MMADHC	27249	broad.mit.edu	37	chr2	150438285	150438285	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtagaaagcaggtaagttCaataaacactaacacataaa	6	6	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150438285	A	A	150438285	1	1	36	0	1	0	0	0	0	0	0	0	9735	841	29	3		3	MMADHC	2	150438285	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6124322	150438285	92761088	81	46220											
HOXD13	3239	broad.mit.edu	37	chr2	176959096	176959097	+	Intron	DNP	CC	AT	AT													atggcattttttaaaaatttCctgcacccctgcaaacgcac							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	176959097	AT	AT	176959096	1	1	36	0	1	0	0	0	0	0	0	0	7389	870	30	3		3	HOXD13	2	176959096	Intron	DNP	CC	TCGA-17-Z001-01A-01W-0746-08	26520811	176959096	66240277	82	46221											
HOXD8	3234	broad.mit.edu	37	chr2	176995617	176995617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattggcgaggacccagacCacttaaatcagagctcgtct	9	11	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176995617	A	A	176995617	3	1	36	1	0	0	0	0	1	0	0	0	7392	594	21	2	525	2	HOXD8	2	176995617	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	36521	176995617	66203756	83	46222											
ITGA4	3676	broad.mit.edu	37	chr2	182359975	182359975	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagatgttagcatatattctCtaattttctataaatagtgt	5	4	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182359975	A	A	182359975	1	1	36	0	1	0	0	0	0	0	0	0	7948	928	32	3		3	ITGA4	2	182359975	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5364358	182359975	60839398	84	46223											
ZNF804A	91752	broad.mit.edu	37	chr2	185798372	185798372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaatttgctcgaaatgtaGcatctaaatccaggaaagat	10	6	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185798372	T	T	185798372	3	4	36	1	0	0	0	0	1	0	0	0	18299	971	34	3	308	3	ZNF804A	2	185798372	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3438397	185798372	57401001	85	46224											
ITGAV	3685	broad.mit.edu	37	chr2	187532368	187532368	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gactatatcattttgatattCatggtaggttttctttggtc	8	5	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187532368	T	T	187532368	1	4	36	0	1	0	0	0	0	0	0	0	7958	841	29	4		4	ITGAV	2	187532368	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1733996	187532368	55667005	86	46225											
HECW2	57520	broad.mit.edu	37	chr2	197086832	197086832	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttaaatcacccaataaaCcacgaataaataagcatctg	4	9	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197086832	T	T	197086832	1	4	36	0	1	0	0	0	0	0	0	0	7110	522	18	4		4	HECW2	2	197086832	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	9554464	197086832	46112541	87	46226											
CCDC150	284992	broad.mit.edu	37	chr2	197521518	197521518	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcttgaaagcctcatgcagtCcttgaagatgaacatctttc	7	10	3	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197521518	T	T	197521518	3	4	36	1	0	0	0	0	1	0	0	0	2811	855	30	4	348	4	CCDC150	2	197521518	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	434686	197521518	45677855	88	46227											
CFLAR	8837	broad.mit.edu	37	chr2	202000805	202000805	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagaatagacctgaagacAaaaatccagaagtacaagca	7	9	0	5			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202000805	G	G	202000805	2	3	36	1	0	0	0	0	0	0	0	1	3322	117	5	5		5	CFLAR	2	202000805	Silent	SNP	A	TCGA-17-Z001-01A-01W-0746-08	4479287	202000805	41198568	89	46228											
CPO	130749	broad.mit.edu	37	chr2	207804146	207804146	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttcccacactggaaaagGtgtttgaggacatgagagag	12	7	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207804146	A	A	207804146	1	1	36	0	1	0	0	0	0	0	0	0	3852	1276	44	4		4	CPO	2	207804146	5'Flank	SNP	G	TCGA-17-Z001-01A-01W-0746-08	5803341	207804146	35395227	90	46229											
CPS1	1373	broad.mit.edu	37	chr2	211527951	211527951	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taataatccatggaagctttCattaaatctactttgaaatc	4	7	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211527951	T	T	211527951	1	4	36	0	1	0	0	0	0	0	0	0	3855	841	29	4		4	CPS1	2	211527951	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3723805	211527951	31671422	91	46230											
TNS1	7145	broad.mit.edu	37	chr2	218844252	218844255	+	Intron	DEL	ACAC	-	-													gcatgacttgaaacacacagAcacacacacacacacacaca					rs72360012		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	218844255	-	-	218844252	6	5	36	0	1	1	0	1	0	0	0	0	16466	290	10	0		0	TNS1	2	218844252	Intron	DEL	ACAC	TCGA-17-Z001-01A-01W-0746-08	7316301	218844252	24355121	92	46231											
VIL1	7429	broad.mit.edu	37	chr2	219294221	219294221	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgtaccagtgagcgcccAgcggggtcttcctgggtgct	14	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219294221	T	T	219294221	1	4	36	0	1	0	0	0	0	0	0	0	17291	203	7	5		5	VIL1	2	219294221	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	449969	219294221	23905152	93	46232											
CCDC108	255101	broad.mit.edu	37	chr2	219892857	219892857	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actaatggtgcccatgggacCctgggggcatgggattgccc	15	11	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219892857	T	T	219892857	1	4	36	0	1	0	0	0	0	0	0	0	2769	638	22	4		4	CCDC108	2	219892857	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	598636	219892857	23306516	94	46233											
PTPRN	5798	broad.mit.edu	37	chr2	220162287	220162287	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagctcctctggggtatggtCttctgcctggccctgatcct	11	14	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220162287	T	T	220162287	1	4	36	0	1	0	0	0	0	0	0	0	12915	928	32	4		4	PTPRN	2	220162287	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	269430	220162287	23037086	95	46234											
SPEG	10290	broad.mit.edu	37	chr2	220345390	220345390	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcactctccttttcccaCaggcctgtgggtgttgttgc	9	13	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220345390	A	A	220345390	1	1	36	0	1	0	0	0	0	0	0	0	15154	493	17	3		3	SPEG	2	220345390	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	183103	220345390	22853983	96	46235											
SLC4A3	6508	broad.mit.edu	37	chr2	220502412	220502413	+	Frame_Shift_Ins	INS	-	C	C													gccctgccccccaccgagggINScccccccagcccgaggaacc							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220502413	C	C	220502412	7	5	36	1	0	1	1	0	0	0	0	0	14769	1203	42	0	2788	0	SLC4A3	2	220502412	Frame_Shift_Ins	INS	-	TCGA-17-Z001-01A-01W-0746-08	157022	220502412	22696961	97	46236											
SPHKAP	80309	broad.mit.edu	37	chr2	228883645	228883645	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatgattctcctgttcatgGagtccagaaagtctccaatg	8	11	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228883645	A	A	228883645	3	1	36	1	0	0	0	0	1	0	0	0	15166	1174	41	4	3201	4	SPHKAP	2	228883645	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	8381233	228883645	14315728	98	46237											
DIS3L2	129563	broad.mit.edu	37	chr2	233127787	233127787	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcctagcctgaacctgCcaccattccgagcacacagt	10	15	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233127787	G	G	233127787	1	3	36	0	1	0	0	0	0	0	0	0	4577	754	26	4		4	DIS3L2	2	233127787	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4244142	233127787	10071586	99	46238											
TRPM8	79054	broad.mit.edu	37	chr2	234839292	234839292	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaattagtaatgtgttaTtcaatgttctctctccaaag	5	6	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234839292	C	C	234839292	1	2	36	0	1	0	0	0	0	0	0	0	16717	1508	52	5		5	TRPM8	2	234839292	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1711505	234839292	8360081	100	46239											
CXCR7	57007	broad.mit.edu	37	chr2	237489382	237489382	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctggccattgccgacctgTgggttgtcctcaccatccca	9	16	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237489382	A	A	237489382	3	1	36	1	0	0	0	0	1	0	0	0	4129	1696	59	5	276	5	CXCR7	2	237489382	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	2650090	237489382	5709991	101	46240											
C3orf31	132001	broad.mit.edu	37	chr3	11880586	11880586	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaataggaagagtcagaAactcatttctatttccagag	10	6	3	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11880586	C	C	11880586	1	2	36	0	1	0	0	0	0	0	0	0	2243	29	1	5		5	C3orf31	3	11880586	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08		11880586	186141844	102	46241											
PLCL2	23228	broad.mit.edu	37	chr3	17056392	17056392	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaagaagatcgtaacaActtatgacatggtgagttgt	10	5	1	5			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17056392	T	T	17056392	3	4	36	1	0	0	0	0	1	0	0	0	12135	43	2	5	3011	5	PLCL2	3	17056392	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	5175806	17056392	180966038	103	46242											
EFHB	151651	broad.mit.edu	37	chr3	19921148	19921148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgttttacacttgatcCggtctgcatgccgtagctca	10	10	2	2	rs151124981		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19921148	A	A	19921148	3	1	36	1	0	0	0	0	1	0	0	0	4985	652	23	1	28	1	EFHB	3	19921148	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2864756	19921148	178101282	104	46243											
SLC22A14	9389	broad.mit.edu	37	chr3	38355272	38355272	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaatgagagagctgggCgtgagcgtccacttcagaca	14	9	1	5			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38355272	T	T	38355272	2	4	36	1	0	0	0	0	0	0	0	1	14558	755	27	4		4	SLC22A14	3	38355272	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	18434124	38355272	159667158	105	46244											
CCR1	1230	broad.mit.edu	37	chr3	46245043	46245043	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagtatagtcaaattgtaGggggtccaaaagagaaaaaa	10	3	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46245043	T	T	46245043	2	4	36	1	0	0	0	0	0	0	0	1	2969	987	35	2		2	CCR1	3	46245043	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7889771	46245043	151777387	106	46245											
PTPRG	5793	broad.mit.edu	37	chr3	62110244	62110244	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcggtggtccaacaggctGtttttcctaatggacctcac	11	11	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62110244	C	C	62110244	1	2	36	0	1	0	0	0	0	0	0	0	12910	1392	48	4		4	PTPRG	3	62110244	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	15865201	62110244	135912186	107	46246											
PRICKLE2	166336	broad.mit.edu	37	chr3	64142982	64142982	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggcgggtgccagcaaacGccgtggccagcgcgtgacgc	16	15	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64142982	T	T	64142982	2	4	36	1	0	0	0	0	0	0	0	1	12593	1074	38	3		3	PRICKLE2	3	64142982	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2032738	64142982	133879448	108	46247											
ROBO2	6092	broad.mit.edu	37	chr3	77147176	77147176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttttgtaggatcgcgtcttCgccaggaggactttcccccg	12	12	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77147176	A	A	77147176	3	1	36	1	0	0	0	0	1	0	0	0	13625	893	31	3	81	3	ROBO2	3	77147176	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	13004194	77147176	120875254	109	46248											
CADM2	253559	broad.mit.edu	37	chr3	86115739	86115739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctggcaaaagtttcttcCtaaataatgtagctttaatg	6	6	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86115739	A	A	86115739	1	1	36	0	1	0	0	0	0	0	0	0	2593	696	24	2		2	CADM2	3	86115739	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	8968563	86115739	111906691	110	46249											
GAP43	2596	broad.mit.edu	37	chr3	115395284	115395284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttccactgataactcgcCgtcctccaaggctgaagatg	9	13	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115395284	G	G	115395284	3	3	36	1	0	0	0	0	1	0	0	0	6297	652	23	4	603	4	GAP43	3	115395284	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	29279545	115395284	82627146	111	46250											
ADCY5	111	broad.mit.edu	37	chr3	123071211	123071211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcccgccctaggccagGcactcagctgaggtacatct	10	16	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123071211	T	T	123071211	1	4	36	0	1	0	0	0	0	0	0	0	297	1218	42	3		3	ADCY5	3	123071211	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7675927	123071211	74951219	112	46251											
SNX4	8723	broad.mit.edu	37	chr3	125179764	125179764	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcattggaatacaaagtatTagggttctagagaagtgcaa	10	4	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125179764	A	A	125179764	1	1	36	0	1	0	0	0	0	0	0	0	15018	1769	61	5		5	SNX4	3	125179764	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	2108553	125179764	72842666	113	46252											
ALDH1L1	10840	broad.mit.edu	37	chr3	125826122	125826122	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaaagcccgttgcacatggGagacacggtgcccgatggtc	13	11	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125826122	T	T	125826122	1	4	36	0	1	0	0	0	0	0	0	0	494	1189	41	3		3	ALDH1L1	3	125826122	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	646358	125826122	72196308	114	46253											
CHCHD6	84303	broad.mit.edu	37	chr3	126485360	126485360	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctcttggtgtcaccaaagAgtgtgagtagcccatggtga	13	8	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126485360	C	C	126485360	1	2	36	0	1	0	0	0	0	0	0	0	3351	319	11	5		5	CHCHD6	3	126485360	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	659238	126485360	71537070	115	46254											
COL6A6	131873	broad.mit.edu	37	chr3	130311471	130311471	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaaggtaaggattgcataAgagtgtggagttttctcaat	11	5	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130311471	G	G	130311471	1	3	36	0	1	0	0	0	0	0	0	0	3735	87	3	5		5	COL6A6	3	130311471	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	3826111	130311471	67710959	116	46255											
COL6A6	131873	broad.mit.edu	37	chr3	130318587	130318587	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaccgtcacacatctgtcTgttcctttgacagggcagaa	8	11	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130318587	A	A	130318587	1	1	36	0	1	0	0	0	0	0	0	0	3735	1595	55	5		5	COL6A6	3	130318587	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	7116	130318587	67703843	117	46256											
CPNE4	131034	broad.mit.edu	37	chr3	131623901	131623901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacaaaaacacctaaaaaGtcttaggctcatgaattaag	5	7	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131623901	T	T	131623901	1	4	36	0	1	0	0	0	0	0	0	0	3846	1044	36	3		3	CPNE4	3	131623901	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1305314	131623901	66398529	118	46257											
EPHB1	2047	broad.mit.edu	37	chr3	134852061	134852061	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacatagagcaggcaggtgTagtgttgcgcttctgagaat	13	7	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134852061	C	C	134852061	1	2	36	0	1	0	0	0	0	0	0	0	5216	1653	57	5		5	EPHB1	3	134852061	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3228160	134852061	63170369	119	46258											
ACPL2	92370	broad.mit.edu	37	chr3	141002237	141002237	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgggcttatattacagacaGaacctgaggagtgagggatg	15	5	0	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141002237	C	C	141002237	1	2	36	0	1	0	0	0	0	0	0	0	166	957	33	4		4	ACPL2	3	141002237	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6150176	141002237	57020193	120	46259											
PLOD2	5352	broad.mit.edu	37	chr3	145796835	145796835	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagggcatcaaaacacagtGacacaccaactggtaaagca	8	10	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145796835	A	A	145796835	1	1	36	0	1	0	0	0	0	0	0	0	12197	1305	45	4		4	PLOD2	3	145796835	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4794598	145796835	52225595	121	46260											
PLOD2	5352	broad.mit.edu	37	chr3	145796987	145796987	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctttcattcatctctgatcgGagtgtctttcctttaattaa	5	9	4	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145796987	C	C	145796987	2	2	36	1	0	0	0	0	0	0	0	1	12197	1161	41	4		4	PLOD2	3	145796987	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	152	145796987	52225443	122	46261											
PLSCR5	389158	broad.mit.edu	37	chr3	146311675	146311675	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaatgctaatcttaaaaAtcaaaaaggacaaccagagc	5	8	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146311675	C	C	146311675	1	2	36	0	1	0	0	0	0	0	0	0	12208	116	4	5		5	PLSCR5	3	146311675	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	514688	146311675	51710755	123	46262											
SERP1	27230	broad.mit.edu	37	chr3	150263949	150263949	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccaccacctgccccggCcacccctcggactcgctcac	9	23	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150263949	G	G	150263949	1	3	36	0	1	0	0	0	0	0	0	0	14197	754	26	4		4	SERP1	3	150263949	5'UTR	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3952274	150263949	47758481	124	46263											
MED12L	116931	broad.mit.edu	37	chr3	151085515	151085515	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtttttccctggaggacGtcgtgcagcatgtcgcactt	12	10	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151085515	A	A	151085515	3	1	36	1	0	0	0	0	1	0	0	0	9522	1145	40	4	3390	4	MED12L	3	151085515	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	821566	151085515	46936915	125	46264											
AADAC	13	broad.mit.edu	37	chr3	151545721	151545721	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctagatgtgagggcagccCctttgttggctgatgacaac	12	10	0	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151545721	T	T	151545721	3	4	36	1	0	0	0	0	1	0	0	0	10	623	22	4	979	4	AADAC	3	151545721	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	460206	151545721	46476709	126	46265											
GPR149	344758	broad.mit.edu	37	chr3	154071615	154071615	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcttttctttcaaatacAggacaaggtcctaacttgaa	5	8	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154071615	C	C	154071615	1	2	36	0	1	0	0	0	0	0	0	0	6719	203	7	5		5	GPR149	3	154071615	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2525894	154071615	43950815	127	46266											
NLGN1	22871	broad.mit.edu	37	chr3	173997312	173997312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgatgcagcccacggagaCgaggttccctatgtactggg	14	11	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173997312	A	A	173997312	3	1	36	1	0	0	0	0	1	0	0	0	10556	535	19	3	1535	3	NLGN1	3	173997312	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	19925697	173997312	24025118	128	46267											
FXR1	8087	broad.mit.edu	37	chr3	180630407	180630408	+	5'Flank	INS	-	C	C													cccgcctccttctcgcccctINScccccctcctcccctctggt							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180630408	C	C	180630407	6	5	36	0	1	1	1	0	0	0	0	0	6175	1566	54	0		0	FXR1	3	180630407	5'Flank	INS	-	TCGA-17-Z001-01A-01W-0746-08	6633095	180630407	17392023	129	46268											
MASP1	5648	broad.mit.edu	37	chr3	186943419	186943419	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccttagccctttcactgCcttcatccacctttcccaga	4	18	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186943419	G	G	186943419	1	3	36	0	1	0	0	0	0	0	0	0	9414	754	26	4		4	MASP1	3	186943419	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6313012	186943419	11079011	130	46269											
ATP13A5	344905	broad.mit.edu	37	chr3	193071870	193071870	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaggaagtaagaagtaaggGgcagaaatctattttttcaa	10	4	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193071870	A	A	193071870	1	1	36	0	1	0	0	0	0	0	0	0	1131	1247	43	4		4	ATP13A5	3	193071870	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6128451	193071870	4950560	131	46270											
FYTTD1	84248	broad.mit.edu	37	chr3	197483217	197483217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagaagttaggaacgtaGgacatctatcagctagaaaa	10	5	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197483217	T	T	197483217	1	4	36	0	1	0	0	0	0	0	0	0	6187	1015	35	2		2	FYTTD1	3	197483217	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4411347	197483217	539213	132	46271											
ZNF595	152687	broad.mit.edu	37	chr4	59165	59165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattgctggcatgccctcCtttttcttcagaattataca	5	10	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59165	A	A	59165	1	1	36	0	1	0	0	0	0	0	0	0	18152	696	24	2		2	ZNF595	4	59165	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08		59165	191095111	133	46272											
STK32B	55351	broad.mit.edu	37	chr4	5098236	5098237	+	Intron	INS	-	CATC	CATC													attccaacggtcaccacacaINScatcctctcaattagactcc					rs148514673	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CATC	5098237	CATC	CATC	5098236	6	5	36	0	1	1	1	0	0	0	0	0	15416	174	6	0		0	STK32B	4	5098236	Intron	INS	-	TCGA-17-Z001-01A-01W-0746-08	5039071	5098236	186056040	134	46273											
TBC1D14	57533	broad.mit.edu	37	chr4	6998032	6998032	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtatttataatggtgaaaaCtcatttctttcctgtcaaga	7	6	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6998032	T	T	6998032	1	4	36	0	1	0	0	0	0	0	0	0	15722	580	20	4		4	TBC1D14	4	6998032	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1899796	6998032	184156244	135	46274											
SH3TC1	54436	broad.mit.edu	37	chr4	8217932	8217932	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagacggccatccaagtccaTgtggatgagaacgccttaag	12	10	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8217932	A	A	8217932	3	1	36	1	0	0	0	0	1	0	0	0	14374	1461	51	5	594	5	SH3TC1	4	8217932	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1219900	8217932	182936344	136	46275											
GPR125	166647	broad.mit.edu	37	chr4	22415036	22415036	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaaatgggaaataaaaAtatttctgaaacaaacttca	7	4	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22415036	G	G	22415036	1	3	36	0	1	0	0	0	0	0	0	0	6704	116	4	5		5	GPR125	4	22415036	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	14197104	22415036	168739240	137	46276											
C4orf19	55286	broad.mit.edu	37	chr4	37591710	37591710	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcattgtctttcctgaagCtatctctttgatccagttca	5	10	4	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37591710	T	T	37591710	2	4	36	1	0	0	0	0	0	0	0	1	2276	811	28	4		4	C4orf19	4	37591710	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	15176674	37591710	153562566	138	46277											
PGM2	55276	broad.mit.edu	37	chr4	37839239	37839239	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgccaaccccctttgtggtaAgtagccatttcctttcataa	6	13	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37839239	G	G	37839239	1	3	36	0	1	0	0	0	0	0	0	0	11893	87	3	5		5	PGM2	4	37839239	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	247529	37839239	153315037	139	46278											
DCUN1D4	23142	broad.mit.edu	37	chr4	52740525	52740525	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcctctggagatgatttAtctgccaagaaaagtagaca	9	9	2	4	rs146614901		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52740525	G	G	52740525	2	3	36	1	0	0	0	0	0	0	0	1	4349	446	16	5		5	DCUN1D4	4	52740525	Silent	SNP	A	TCGA-17-Z001-01A-01W-0746-08	14901286	52740525	138413751	140	46279											
KIAA1211	57482	broad.mit.edu	37	chr4	57190505	57190505	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcgtgctttatatcctacAgtgtaatgactagcagagca	10	8	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57190505	T	T	57190505	1	4	36	0	1	0	0	0	0	0	0	0	8285	203	7	5		5	KIAA1211	4	57190505	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	4449980	57190505	133963771	141	46280											
EPHA5	2044	broad.mit.edu	37	chr4	66361218	66361218	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtggacatttgccgcaGctctggatgtgaggtgaggc	17	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66361218	C	C	66361218	3	2	36	1	0	0	0	0	1	0	0	0	5212	962	34	4	2219	4	EPHA5	4	66361218	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	9170713	66361218	124793058	142	46281											
UGT2B10	7365	broad.mit.edu	37	chr4	69682436	69682436	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatatgaagaagtgggatcaGttttacagtgaagttttagg	12	2	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69682436	C	C	69682436	3	2	36	1	0	0	0	0	1	0	0	0	17082	1020	36	4	701	4	UGT2B10	4	69682436	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3321218	69682436	121471840	143	46282											
ALB	213	broad.mit.edu	37	chr4	74283142	74283143	+	Intron	DNP	GG	TT	TT													atggagataatatgatgaatGgaacatagcaacatcttagt							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	74283143	TT	TT	74283142	1	4	36	0	1	0	0	0	0	0	0	0	486	1363	47	2		2	ALB	4	74283142	Intron	DNP	GG	TCGA-17-Z001-01A-01W-0746-08	4600706	74283142	116871134	144	46283											
GRID2	2895	broad.mit.edu	37	chr4	93365359	93365359	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatggcaccaaaattcatGcgcgtctgtgtgaagagacc	11	10	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93365359	A	A	93365359	1	1	36	0	1	0	0	0	0	0	0	0	6838	1334	46	4		4	GRID2	4	93365359	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	19082217	93365359	97788917	145	46284											
C4orf37	285555	broad.mit.edu	37	chr4	98762072	98762072	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacatcatagctgcctggCgctggaataacctgaaaaaa	9	9	1	2	rs149484886	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98762072	A	A	98762072	2	1	36	1	0	0	0	0	0	0	0	1	2290	755	27	3		3	C4orf37	4	98762072	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5396713	98762072	92392204	146	46285											
MTTP	4547	broad.mit.edu	37	chr4	100532328	100532328	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgtcgagttctgaaggaaAtggtcgctcacaattatgac	10	9	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100532328	G	G	100532328	3	3	36	1	0	0	0	0	1	0	0	0	10058	101	4	5	1848	5	MTTP	4	100532328	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1770256	100532328	90621948	147	46286											
PPP3CA	5530	broad.mit.edu	37	chr4	101947129	101947149	+	In_Frame_Del	DEL	TGCGAGGCGGCATCCTCTCAT	-	-													gtcagagggcatggcatctcTgcgaggcggcatcctctcat					rs151291665		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101947149	-	-	101947129	7	5	36	1	0	1	0	1	0	0	0	0	12498	1588	55	0	110	0	PPP3CA	4	101947129	In_Frame_Del	DEL	TGCGAGGCGGCATCCTCTCAT	TCGA-17-Z001-01A-01W-0746-08	1414801	101947129	89207147	148	46287											
EGF	1950	broad.mit.edu	37	chr4	110902110	110902110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaaacgtgtctggctctgGatggtcatcagctgttggca	14	8	4	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110902110	T	T	110902110	3	4	36	1	0	0	0	0	1	0	0	0	5002	1174	41	3	2408	3	EGF	4	110902110	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	8954981	110902110	80252166	149	46288											
ANK2	287	broad.mit.edu	37	chr4	114232510	114232510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagtcagttcctggatgGtatgaattacctgcgataca	10	9	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114232510	T	T	114232510	3	4	36	1	0	0	0	0	1	0	0	0	621	1261	44	3	2767	3	ANK2	4	114232510	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3330400	114232510	76921766	150	46289											
RNF150	57484	broad.mit.edu	37	chr4	141832248	141832248	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatttttttccaattcctaCaaggcaacagtccttctggc	6	11	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141832248	G	G	141832248	1	3	36	0	1	0	0	0	0	0	0	0	13562	493	17	4		4	RNF150	4	141832248	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	27599738	141832248	49322028	151	46290											
ANAPC10	10393	broad.mit.edu	37	chr4	145916517	145916517	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaatgattttcgtctcaTtttaaagtcaccttattgaa	5	6	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145916517	C	C	145916517	1	2	36	0	1	0	0	0	0	0	0	0	599	1508	52	5		5	ANAPC10	4	145916517	3'UTR	SNP	T	TCGA-17-Z001-01A-01W-0746-08	4084269	145916517	45237759	152	46291											
ARHGAP10	79658	broad.mit.edu	37	chr4	148894275	148894275	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatgtgaatgagtgtttcGgaatgagtgatattcagtgt	13	2	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148894275	A	A	148894275	1	1	36	0	1	0	0	0	0	0	0	0	864	1131	39	4		4	ARHGAP10	4	148894275	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2977758	148894275	42260001	153	46292											
LRBA	987	broad.mit.edu	37	chr4	151793767	151793767	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctactgcaaagatttataaaAtaaataagtagaatacaaca	4	5	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151793767	T	T	151793767	1	4	36	0	1	0	0	0	0	0	0	0	9018	116	4	5		5	LRBA	4	151793767	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2899492	151793767	39360509	154	46293											
DCHS2	54798	broad.mit.edu	37	chr4	155180879	155180879	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttctgacttcaaaatcaaGaaacttgggttctttcacag	6	8	5	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155180879	T	T	155180879	3	4	36	1	0	0	0	0	1	0	0	0	4321	942	33	3	3532	3	DCHS2	4	155180879	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3387112	155180879	35973397	155	46294											
DCHS2	54798	broad.mit.edu	37	chr4	155218883	155218883	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattccaatatcaagaacAggcattgaactaaaaaatgt	5	6	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155218883	T	T	155218883	1	4	36	0	1	0	0	0	0	0	0	0	4321	203	7	5		5	DCHS2	4	155218883	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	38004	155218883	35935393	156	46295											
MORF4	10934	broad.mit.edu	37	chr4	174538073	174538073	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatttataagtgatttgcCacctcctccttcagcacttc	4	14	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174538073	A	A	174538073	1	1	36	0	1	0	0	0	0	0	0	0	9799	609	21	2		2	MORF4	4	174538073	5'Flank	SNP	C	TCGA-17-Z001-01A-01W-0746-08	19319190	174538073	16616203	157	46296											
FAM149A	25854	broad.mit.edu	37	chr4	187088124	187088124	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atactatccttcatttagtaCagaggaaggcatctacaaaa	6	8	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187088124	G	G	187088124	4	3	36	1	0	0	0	0	0	1	0	0	5501	489	17	4	1201	4	FAM149A	4	187088124	Nonsense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	12550051	187088124	4066152	158	46297											
ZDHHC11	79844	broad.mit.edu	37	chr5	843743	843743	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggtccgtgcggagcacCccggggttcacgaggtactg	17	12	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	843743	A	A	843743	2	1	36	1	0	0	0	0	0	0	0	1	17727	610	22	2		2	ZDHHC11	5	843743	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08		843743	180071517	159	46298											
MTRR	4552	broad.mit.edu	37	chr5	7878268	7878268	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcaggaagaaaggattctGaggttttgaagcaaaatgca	11	4	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7878268	A	A	7878268	3	1	36	1	0	0	0	0	1	0	0	0	10055	1291	45	4	712	4	MTRR	5	7878268	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7034525	7878268	173036992	160	46299											
SEMA5A	9037	broad.mit.edu	37	chr5	9154783	9154783	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtctgattcaggggtaccCgcactttcttaatggttccg	11	10	3	1	rs138343991	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9154783	T	T	9154783	3	4	36	1	0	0	0	0	1	0	0	0	14150	652	23	4	1974	4	SEMA5A	5	9154783	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1276515	9154783	171760477	161	46300											
CTNND2	1501	broad.mit.edu	37	chr5	11236884	11236884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaccgagggaaactggtgCtgcaacatctgaatcacttc	11	10	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11236884	A	A	11236884	3	1	36	1	0	0	0	0	1	0	0	0	4054	796	28	3	2049	3	CTNND2	5	11236884	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2082101	11236884	169678376	162	46301											
DNAH5	1767	broad.mit.edu	37	chr5	13885039	13885039	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtgcacacacacacacacAcacataccccagcaactatg	4	17	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13885039	C	C	13885039	1	2	36	0	1	0	0	0	0	0	0	0	4644	174	6	5		5	DNAH5	5	13885039	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2648155	13885039	167030221	163	46302											
CDH18	1016	broad.mit.edu	37	chr5	19612586	19612586	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattgacatcggttaaggtGatgttgactgttgtagatcc	11	6	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19612586	C	C	19612586	3	2	36	1	0	0	0	0	1	0	0	0	3133	1280	45	4	1636	4	CDH18	5	19612586	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	5727547	19612586	161302674	164	46303											
CDH9	1007	broad.mit.edu	37	chr5	26881506	26881506	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattttcccacagaggcacAgtcctccttatctgaaaaat	5	11	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881506	T	T	26881506	2	4	36	1	0	0	0	0	0	0	0	1	3147	175	7	5		5	CDH9	5	26881506	Silent	SNP	A	TCGA-17-Z001-01A-01W-0746-08	7268920	26881506	154033754	165	46304											
UTP15	84135	broad.mit.edu	37	chr5	72868501	72868501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgtacacctgtttactGcttgaggaaatgagttattt	9	5	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72868501	T	T	72868501	1	4	36	0	1	0	0	0	0	0	0	0	17224	1334	46	3		3	UTP15	5	72868501	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	45986995	72868501	108046759	166	46305											
CRHBP	1393	broad.mit.edu	37	chr5	76251567	76251567	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcggtacatagatttctgTgagagtggtcttagcaggag	15	5	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76251567	G	G	76251567	3	3	36	1	0	0	0	0	1	0	0	0	3902	1702	59	5	437	5	CRHBP	5	76251567	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3383066	76251567	104663693	167	46306											
EDIL3	10085	broad.mit.edu	37	chr5	83433157	83433157	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttttgcaaggctcaactTcgcattcatttatgtctaag	6	9	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83433157	G	G	83433157	3	3	36	1	0	0	0	0	1	0	0	0	4955	1783	62	5	1099	5	EDIL3	5	83433157	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	7181590	83433157	97482103	168	46307											
APC	324	broad.mit.edu	37	chr5	112175871	112175871	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaattaagaataatgcctcCagttcaggaaaatgacaatg	9	6	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112175871	T	T	112175871	3	4	36	1	0	0	0	0	1	0	0	0	765	594	21	4	4638	4	APC	5	112175871	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	28742714	112175871	68739389	169	46308											
FBN2	2201	broad.mit.edu	37	chr5	127636547	127636547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttcataccctgggggaCagatgcatctgaaggatccc	10	11	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127636547	A	A	127636547	3	1	36	1	0	0	0	0	1	0	0	0	5760	478	17	3	2682	3	FBN2	5	127636547	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	15460676	127636547	53278713	170	46309											
SLC27A6	28965	broad.mit.edu	37	chr5	128362812	128362812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatggctgcaaaaatgtcGttctttcttgcaggagaacc	10	9	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128362812	T	T	128362812	1	4	36	0	1	0	0	0	0	0	0	0	14644	1160	40	3		3	SLC27A6	5	128362812	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	726265	128362812	52552448	171	46310											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719887	140719887	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacatcaacgacaacgcacCcgccttctcccgcacatcct	5	19	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140719887	G	G	140719887	3	3	36	1	0	0	0	0	1	0	0	0	11648	623	22	4	1351	4	PCDHGA2	5	140719887	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	12357075	140719887	40195373	172	46311											
GM2A	2760	broad.mit.edu	37	chr5	150757985	150757985	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctcttcttctaggtatttGatcttgctgccaaacaccag	6	11	4	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150757985	A	A	150757985	1	1	36	0	1	0	0	0	0	0	0	0	6548	1305	45	4		4	GM2A	5	150757985	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	10038098	150757985	30157275	173	46312											
SLIT3	6586	broad.mit.edu	37	chr5	168123402	168123402	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatctgggttgatctcacAccgctgcccctcaaagccca	8	16	4	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168123402	T	T	168123402	3	4	36	1	0	0	0	0	1	0	0	0	14855	159	6	5	1630	5	SLIT3	5	168123402	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	17365417	168123402	12791858	174	46313											
DOCK2	1794	broad.mit.edu	37	chr5	169122999	169122999	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcgcacattttatgtggctGaattgtaatgatgatttgtt	10	4	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169122999	T	T	169122999	1	4	36	0	1	0	0	0	0	0	0	0	4727	1305	45	3		3	DOCK2	5	169122999	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	999597	169122999	11792261	175	46314											
DOCK2	1794	broad.mit.edu	37	chr5	169135110	169135110	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtggcctagggaccaaaccTgcacaagcacagaaaatgac	10	12	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169135110	A	A	169135110	1	1	36	0	1	0	0	0	0	0	0	0	4727	1595	55	5		5	DOCK2	5	169135110	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	12111	169135110	11780150	176	46315											
C5orf25	375484	broad.mit.edu	37	chr5	175735130	175735130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgacactttccttgtttGtctcaaccatgctctgagca	7	12	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175735130	T	T	175735130	1	4	36	0	1	0	0	0	0	0	0	0	2311	1392	48	3		3	C5orf25	5	175735130	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6600020	175735130	5180130	177	46316											
UIMC1	51720	broad.mit.edu	37	chr5	176335495	176335495	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacaaccaggagggttaggTggcctttcccaaaacactct	10	11	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176335495	A	A	176335495	1	1	36	0	1	0	0	0	0	0	0	0	17097	1711	59	5		5	UIMC1	5	176335495	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	600365	176335495	4579765	178	46317											
RREB1	6239	broad.mit.edu	37	chr6	7226994	7226994	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttctttccttaaaatgtcGgttgggctttgtcttttttt	8	6	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7226994	A	A	7226994	1	1	36	0	1	0	0	0	0	0	0	0	13790	1131	39	4		4	RREB1	6	7226994	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08		7226994	163888073	179	46318											
TFAP2A	7020	broad.mit.edu	37	chr6	10411977	10411977	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcacggcgccgacgctccCcggagcgcgggagcccggct	16	17	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10411977	G	G	10411977	1	3	36	0	1	0	0	0	0	0	0	0	15910	638	22	4		4	TFAP2A	6	10411977	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3184983	10411977	160703090	180	46319											
HLA-G	3135	broad.mit.edu	37	chr6	29797816	29797816	+	Intron	SNP	C	A	A													actgggaagcaccatccacaCtcatgggcctacccagcctg							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29797816	A	A	29797816	1	1	36	0	1	0	0	0	0	0	0	0	7279	580	20	3		3	HLA-G	6	29797816	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	19385839	29797816	141317251	181	46320	230	2									
HLA-G	3135	broad.mit.edu	37	chr6	29797818	29797818	+	Intron	SNP	C	T	T													tgggaagcaccatccacactCatgggcctacccagcctggg					rs142070733	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29797818	T	T	29797818	1	4	36	0	1	0	0	0	0	0	0	0	7279	841	29	4		4	HLA-G	6	29797818	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2	29797818	141317249	182	46321	230	2									
HLA-G	3135	broad.mit.edu	37	chr6	29797988	29797988	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacagaccttaggagggcaGttggtcgaggacccacatct	14	10	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29797988	C	C	29797988	1	2	36	0	1	0	0	0	0	0	0	0	7279	1044	36	4		4	HLA-G	6	29797988	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	170	29797988	141317079	183	46322											
GRM4	2914	broad.mit.edu	37	chr6	34029651	34029651	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggctcccggtgcccacccTgctgccacctgccctcacct	8	21	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34029651	G	G	34029651	1	3	36	0	1	0	0	0	0	0	0	0	6865	1595	55	5		5	GRM4	6	34029651	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	4231663	34029651	137085416	184	46323											
FGD2	221472	broad.mit.edu	37	chr6	36978683	36978683	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggagactgaaccgaggtcCccatcagaggagaccaaagc	12	11	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36978683	G	G	36978683	1	3	36	0	1	0	0	0	0	0	0	0	5890	638	22	4		4	FGD2	6	36978683	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2949032	36978683	134136384	185	46324											
LRFN2	57497	broad.mit.edu	37	chr6	40498244	40498244	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttggcctctctgcaacaTatggccctgttggccatgat	10	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40498244	A	A	40498244	1	1	36	0	1	0	0	0	0	0	0	0	9025	1421	49	5		5	LRFN2	6	40498244	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3519561	40498244	130616823	186	46325											
IL17F	112744	broad.mit.edu	37	chr6	52112029	52112029	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgagggagctgatctgggAtgaaggaatcacatccttgt	14	7	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52112029	T	T	52112029	1	4	36	0	1	0	0	0	0	0	0	0	7708	348	12	5		5	IL17F	6	52112029	5'Flank	SNP	A	TCGA-17-Z001-01A-01W-0746-08	11613785	52112029	119003038	187	46326											
GSTA2	2939	broad.mit.edu	37	chr6	52630299	52630299	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acacaaagaccaactaagttCcctctatcagcaccagtagg	6	13	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52630299	T	T	52630299	1	4	36	0	1	0	0	0	0	0	0	0	6897	870	30	4		4	GSTA2	6	52630299	5'Flank	SNP	C	TCGA-17-Z001-01A-01W-0746-08	518270	52630299	118484768	188	46327											
GFRAL	389400	broad.mit.edu	37	chr6	55192349	55192349	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaactgccgtgagttgtcCagcatgatagtgtttatttt	11	6	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55192349	A	A	55192349	1	1	36	0	1	0	0	0	0	0	0	0	6415	609	21	2		2	GFRAL	6	55192349	5'UTR	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2562050	55192349	115922718	189	46328											
DST	667	broad.mit.edu	37	chr6	56490042	56490042	+	Frame_Shift_Del	DEL	C	-	-													tctaccatggcccggtaggtCattgtttgtaattcatagtc							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56490042	-	-	56490042	7	5	36	1	0	1	0	1	0	0	0	0	4823	826	29	0	17279	0	DST	6	56490042	Frame_Shift_Del	DEL	C	TCGA-17-Z001-01A-01W-0746-08	1297693	56490042	114625025	190	46329											
PHF3	23469	broad.mit.edu	37	chr6	64408494	64408494	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaagatcctaaaaacaAtgtaagtatgctttgttcat	6	5	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64408494	G	G	64408494	3	3	36	1	0	0	0	0	1	0	0	0	11931	115	4	5	3007	5	PHF3	6	64408494	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	7918452	64408494	106706573	191	46330											
KCNQ5	56479	broad.mit.edu	37	chr6	73879599	73879599	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgaaaatcttgaacaaCgtgattcagagacatactta	8	6	2	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73879599	T	T	73879599	1	4	36	0	1	0	0	0	0	0	0	0	8156	551	19	4		4	KCNQ5	6	73879599	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	9471105	73879599	97235468	192	46331											
DDX43	55510	broad.mit.edu	37	chr6	74125189	74125189	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtattaactgaataatgAatacatgagtttttttcccc	5	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74125189	T	T	74125189	1	4	36	0	1	0	0	0	0	0	0	0	4396	261	9	5		5	DDX43	6	74125189	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	245590	74125189	96989878	193	46332											
GRIK2	2898	broad.mit.edu	37	chr6	102483196	102483196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataactttctcgtgaccaaCttatatttattttcttcaga	3	8	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102483196	A	A	102483196	1	1	36	0	1	0	0	0	0	0	0	0	6840	580	20	3		3	GRIK2	6	102483196	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	28358007	102483196	68631871	194	46333											
GRIK2	2898	broad.mit.edu	37	chr6	102503456	102503456	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacgctcaattggaaaagGtaaatgttacttgtttcagt	8	5	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102503456	A	A	102503456	5	1	36	1	0	0	0	0	0	0	1	0	6840	1275	44	4	2621	4	GRIK2	6	102503456	Splice_Site	SNP	G	TCGA-17-Z001-01A-01W-0746-08	20260	102503456	68611611	195	46334											
DDO	8528	broad.mit.edu	37	chr6	110734387	110734387	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaaagaaaaaaacctgCatattacacttacacctata	4	8	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110734387	T	T	110734387	1	4	36	0	1	0	0	0	0	0	0	0	4367	725	25	4		4	DDO	6	110734387	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	8230931	110734387	60380680	196	46335											
RFX6	222546	broad.mit.edu	37	chr6	117237276	117237276	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacaaagaatgctttatttGaccctattatatatactttc	4	7	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117237276	T	T	117237276	1	4	36	0	1	0	0	0	0	0	0	0	13375	1305	45	3		3	RFX6	6	117237276	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6502889	117237276	53877791	197	46336											
CLVS2	134829	broad.mit.edu	37	chr6	123319300	123319300	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctttttgctgccaattgGgatcagagcaggtaaatcct	10	9	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123319300	A	A	123319300	4	1	36	1	0	0	0	0	0	1	0	0	3604	1241	43	4	380	4	CLVS2	6	123319300	Nonsense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6082024	123319300	47795767	198	46337											
LAMA2	3908	broad.mit.edu	37	chr6	129634156	129634156	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaatctctgtgactgcTtcctccctgggacagatgcc	10	14	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129634156	A	A	129634156	3	1	36	1	0	0	0	0	1	0	0	0	8678	1609	56	5	3415	5	LAMA2	6	129634156	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	6314856	129634156	41480911	199	46338											
SLC2A12	154091	broad.mit.edu	37	chr6	134350827	134350827	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggccactgacagcagcagTgacagatgacaggaaggtaa	14	8	0	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134350827	A	A	134350827	3	1	36	1	0	0	0	0	1	0	0	0	14655	1696	59	5	1733	5	SLC2A12	6	134350827	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	4716671	134350827	36764240	200	46339											
GRM1	2911	broad.mit.edu	37	chr6	146350745	146350745	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggaaagtgttgctggcagGagcgtcgtctcagcgctcgg	16	10	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146350745	C	C	146350745	3	2	36	1	0	0	0	0	1	0	0	0	6862	1174	41	4	94	4	GRM1	6	146350745	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	11999918	146350745	24764322	201	46340											
SASH1	23328	broad.mit.edu	37	chr6	148808849	148808849	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatggctcatcaaactgcAatgtgagtttatcatgtctt	8	7	4	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148808849	G	G	148808849	3	3	36	1	0	0	0	0	1	0	0	0	13960	130	5	5	757	5	SASH1	6	148808849	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2458104	148808849	22306218	202	46341											
SYNE1	23345	broad.mit.edu	37	chr6	152555173	152555173	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaagcgaccaatttagTgcatgaaacaatttccttta	7	7	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152555173	C	C	152555173	1	2	36	0	1	0	0	0	0	0	0	0	15564	1711	59	5		5	SYNE1	6	152555173	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3746324	152555173	18559894	203	46342											
SYNE1	23345	broad.mit.edu	37	chr6	152770719	152770719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtatcgatggcctcaccCttgatcccctttaattgtgt	8	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152770719	A	A	152770719	3	1	36	1	0	0	0	0	1	0	0	0	15564	680	24	2	23489	2	SYNE1	6	152770719	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	215546	152770719	18344348	204	46343											
IPCEF1	26034	broad.mit.edu	37	chr6	154544347	154544347	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttccacagtgaaatcagGcaggttgacaaatccatcag	8	10	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154544347	A	A	154544347	3	1	36	1	0	0	0	0	1	0	0	0	7861	1203	42	4	1067	4	IPCEF1	6	154544347	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1773628	154544347	16570720	205	46344											
FOXK1	221937	broad.mit.edu	37	chr7	4800711	4800711	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcctggaggagaaaccCaccattgcgtttgccacaat	11	12	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4800711	T	T	4800711	2	4	36	1	0	0	0	0	0	0	0	1	6074	581	21	4		4	FOXK1	7	4800711	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08		4800711	154337952	206	46345											
BBS9	27241	broad.mit.edu	37	chr7	33573922	33573922	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaattgatttcacgtttccCctctgacatcccagggtaac	6	12	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33573922	T	T	33573922	1	4	36	0	1	0	0	0	0	0	0	0	1347	638	22	4		4	BBS9	7	33573922	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	28773211	33573922	125564741	207	46346											
NPSR1	387129	broad.mit.edu	37	chr7	34790146	34790146	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggctctctggctacctgCttggttaatctcaagctcct	10	12	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34790146	T	T	34790146	1	4	36	0	1	0	0	0	0	0	0	0	10695	812	28	4		4	NPSR1	7	34790146	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1216224	34790146	124348517	208	46347											
EEPD1	80820	broad.mit.edu	37	chr7	36327125	36327125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttcctgggggtgtgagcCagccttgttcttgtttacca	11	9	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36327125	A	A	36327125	1	1	36	0	1	0	0	0	0	0	0	0	4972	609	21	2		2	EEPD1	7	36327125	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1536979	36327125	122811538	209	46348											
ELMO1	9844	broad.mit.edu	37	chr7	36910141	36910141	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaactttgatgtcaataaAgaaacaggactaagcactgg	9	6	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36910141	T	T	36910141	1	4	36	0	1	0	0	0	0	0	0	0	5107	87	3	5		5	ELMO1	7	36910141	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	583016	36910141	122228522	210	46349											
GLI3	2737	broad.mit.edu	37	chr7	42005508	42005508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagtttcgggactggcCgccctcgggccgcgtgtaat	16	11	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42005508	A	A	42005508	3	1	36	1	0	0	0	0	1	0	0	0	6503	652	23	1	1583	1	GLI3	7	42005508	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5095367	42005508	117133155	211	46350											
HECW1	23072	broad.mit.edu	37	chr7	43505904	43505904	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgattcttaactgacatacAtaaagtaatgacacttggcc	6	8	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43505904	G	G	43505904	1	3	36	0	1	0	0	0	0	0	0	0	7109	232	8	5		5	HECW1	7	43505904	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1500396	43505904	115632759	212	46351											
GRB10	2887	broad.mit.edu	37	chr7	50684045	50684045	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctactggagttcagaaaattCtgttgaagaacaaattttta	7	5	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50684045	A	A	50684045	5	1	36	1	0	0	0	0	0	0	1	0	6822	927	32	3	974	3	GRB10	7	50684045	Splice_Site	SNP	C	TCGA-17-Z001-01A-01W-0746-08	7178141	50684045	108454618	213	46352											
ZNF735	730291	broad.mit.edu	37	chr7	63673421	63673421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataaaaatctctgcttacGgccatatggtaagtgtgtgt	9	6	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63673421	T	T	63673421	1	4	36	0	1	0	0	0	0	0	0	0	18253	1131	39	1		1	ZNF735	7	63673421	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	12989376	63673421	95465242	214	46353											
VKORC1L1	154807	broad.mit.edu	37	chr7	65418940	65418940	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttctgttctcaattttcaGagttggcaggaagatcagta	9	6	4	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65418940	T	T	65418940	1	4	36	0	1	0	0	0	0	0	0	0	17300	957	33	3		3	VKORC1L1	7	65418940	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1745519	65418940	93719723	215	46354											
TYW1	55253	broad.mit.edu	37	chr7	66532398	66532398	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgttggcggtaagtaAaaatgaaaggtcatggtgat	12	4	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66532398	T	T	66532398	1	4	36	0	1	0	0	0	0	0	0	0	16944	29	1	5		5	TYW1	7	66532398	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1113458	66532398	92606265	216	46355											
WBSCR17	64409	broad.mit.edu	37	chr7	71130408	71130408	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccctaggtatggctctgtGggggcagcatggaggtcctt	15	10	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71130408	A	A	71130408	3	1	36	1	0	0	0	0	1	0	0	0	17391	1348	47	4	1119	4	WBSCR17	7	71130408	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4598010	71130408	88008255	217	46356											
FKBP6	8468	broad.mit.edu	37	chr7	72755322	72755322	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccgggattttctagttcgAgcccagaaggagcaaccctt	11	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72755322	G	G	72755322	2	3	36	1	0	0	0	0	0	0	0	1	5969	291	11	5		5	FKBP6	7	72755322	Silent	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1624914	72755322	86383341	218	46357											
STX1A	6804	broad.mit.edu	37	chr7	73118706	73118706	+	Missense_Mutation	SNP	C	A	A													cttccggatcctcaggtcagCggaggagcggttcaggcctt							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73118706	A	A	73118706	3	1	36	1	0	0	0	0	1	0	0	0	15461	768	27	3	559	3	STX1A	7	73118706	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	363384	73118706	86019957	219	46358	231	2									
STX1A	6804	broad.mit.edu	37	chr7	73118711	73118711	+	Missense_Mutation	SNP	G	C	C													ggatcctcaggtcagcggagGagcggttcaggccttcctct							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73118711	C	C	73118711	3	2	36	1	0	0	0	0	1	0	0	0	15461	1174	41	4	564	4	STX1A	7	73118711	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	5	73118711	86019952	220	46359	231	2									
EIF4H	7458	broad.mit.edu	37	chr7	73609131	73609132	+	Frame_Shift_Ins	INS	-	C	C													ccaggcgaccggcgaacaggINScccccccatgggcagccgct							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73609132	C	C	73609131	7	5	36	1	0	1	1	0	0	0	0	0	5081	1203	42	0	552	0	EIF4H	7	73609131	Frame_Shift_Ins	INS	-	TCGA-17-Z001-01A-01W-0746-08	490420	73609131	85529532	221	46360											
CACNA2D1	781	broad.mit.edu	37	chr7	81634674	81634674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaattttaaaacaacaatcCtattaagaacattaatcatt	1	6	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81634674	T	T	81634674	1	4	36	0	1	0	0	0	0	0	0	0	2574	696	24	4		4	CACNA2D1	7	81634674	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	8025543	81634674	77503989	222	46361											
CALCR	799	broad.mit.edu	37	chr7	93113427	93113427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcactcttctaggttctGgaaattcagcagtgaaccaa	9	10	4	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93113427	T	T	93113427	1	4	36	0	1	0	0	0	0	0	0	0	2605	1363	47	2		2	CALCR	7	93113427	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	11478753	93113427	66025236	223	46362											
OCM2	4951	broad.mit.edu	37	chr7	97616196	97616196	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggtttttacacacatcaTttgcatccttactttagtct	5	10	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97616196	A	A	97616196	1	1	36	0	1	0	0	0	0	0	0	0	10917	1508	52	5		5	OCM2	7	97616196	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	4502769	97616196	61522467	224	46363											
OCM2	4951	broad.mit.edu	37	chr7	97619473	97619473	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccacaaacaggaacgtgCacatccaggggaaacacatc	9	12	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97619473	T	T	97619473	1	4	36	0	1	0	0	0	0	0	0	0	10917	725	25	4		4	OCM2	7	97619473	5'Flank	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3277	97619473	61519190	225	46364											
ZNF789	285989	broad.mit.edu	37	chr7	99081329	99081329	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcgcattaatgtgctaCgcttgatttaattgttccct	6	9	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99081329	T	T	99081329	1	4	36	0	1	0	0	0	0	0	0	0	18289	551	19	4		4	ZNF789	7	99081329	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1461856	99081329	60057334	226	46365											
TSC22D4	81628	broad.mit.edu	37	chr7	100075243	100075243	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgagacaggcctgacggtGgggtgggggcgcccaggccg	20	12	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100075243	C	C	100075243	3	2	36	1	0	0	0	0	1	0	0	0	16735	1348	47	4	784	4	TSC22D4	7	100075243	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	993914	100075243	59063420	227	46366											
ZAN	7455	broad.mit.edu	37	chr7	100350349	100350349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaaaaactcaccatccCcacggaaaaactcaccatcc	3	18	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100350349	A	A	100350349	3	1	36	1	0	0	0	0	1	0	0	0	17640	623	22	2	2671	2	ZAN	7	100350349	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	275106	100350349	58788314	228	46367											
TRIP6	7205	broad.mit.edu	37	chr7	100469062	100469062	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcacatgcaggaggctgcAtgcaggaggctgcagaaatt	13	8	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100469062	T	T	100469062	1	4	36	0	1	0	0	0	0	0	0	0	16684	232	8	5		5	TRIP6	7	100469062	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	118713	100469062	58669601	229	46368											
MUC17	140453	broad.mit.edu	37	chr7	100677005	100677005	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctagcaccctttcaacaActcctcttgacacaagcaca	5	15	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100677005	C	C	100677005	3	2	36	1	0	0	0	0	1	0	0	0	10068	43	2	5	2318	5	MUC17	7	100677005	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	207943	100677005	58461658	230	46369											
MUC17	140453	broad.mit.edu	37	chr7	100683857	100683857	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattaacaagtatacctgtcAgcaccacgccagtggccatt	7	13	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100683857	G	G	100683857	3	3	36	1	0	0	0	0	1	0	0	0	10068	188	7	5	9170	5	MUC17	7	100683857	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	6852	100683857	58454806	231	46370											
LAMB1	3912	broad.mit.edu	37	chr7	107591535	107591535	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaacaatcagtgttaaTttattttgcaattaaataca	3	4	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107591535	C	C	107591535	1	2	36	0	1	0	0	0	0	0	0	0	8682	1508	52	5		5	LAMB1	7	107591535	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	6907678	107591535	51547128	232	46371											
LAMB4	22798	broad.mit.edu	37	chr7	107745153	107745153	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgaaataccaggtccTggtacctctctgatccttag	9	10	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107745153	G	G	107745153	1	3	36	0	1	0	0	0	0	0	0	0	8685	1595	55	5		5	LAMB4	7	107745153	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	153618	107745153	51393510	233	46372											
FOXP2	93986	broad.mit.edu	37	chr7	114282499	114282499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgagattcagcagttatgGaaagaagtgactggagttca	13	5	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114282499	T	T	114282499	3	4	36	1	0	0	0	0	1	0	0	0	6087	1183	41	3	966	3	FOXP2	7	114282499	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6537346	114282499	44856164	234	46373											
KCND2	3751	broad.mit.edu	37	chr7	120382729	120382729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttgtgcatacttaatgCttccgagtgtgatttcactg	9	8	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120382729	A	A	120382729	1	1	36	0	1	0	0	0	0	0	0	0	8089	812	28	3		3	KCND2	7	120382729	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6100230	120382729	38755934	235	46374											
CCDC136	64753	broad.mit.edu	37	chr7	128449627	128449627	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcagaggaggatgcaggagGagcagggccagctgcaggaa	18	7	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128449627	T	T	128449627	4	4	36	1	0	0	0	0	0	1	0	0	2796	1175	41	3	1771	3	CCDC136	7	128449627	Nonsense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	8066898	128449627	30689036	236	46375											
PLXNA4	91584	broad.mit.edu	37	chr7	131841511	131841511	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagcactttcacctacatGatgggaacaacttgccttgc	7	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131841511	T	T	131841511	1	4	36	0	1	0	0	0	0	0	0	0	12217	1305	45	3		3	PLXNA4	7	131841511	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3391884	131841511	27297152	237	46376											
EXOC4	60412	broad.mit.edu	37	chr7	133059673	133059673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatacctgcaggacactGtagtgactccactgactcag	11	11	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133059673	T	T	133059673	3	4	36	1	0	0	0	0	1	0	0	0	5348	1377	48	3	1125	3	EXOC4	7	133059673	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1218162	133059673	26078990	238	46377											
EXOC4	60412	broad.mit.edu	37	chr7	133722851	133722851	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtagaacagacatcacAtttcctgaggctagtctgag	9	10	3	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133722851	T	T	133722851	1	4	36	0	1	0	0	0	0	0	0	0	5348	232	8	5		5	EXOC4	7	133722851	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	663178	133722851	25415812	239	46378											
PRSS1	5644	broad.mit.edu	37	chr7	142460823	142460823	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggagtctacaccaaggtCtacaactatgtgaaatggat	9	9	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142460823	T	T	142460823	2	4	36	1	0	0	0	0	0	0	0	1	12720	900	32	4		4	PRSS1	7	142460823	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	8737972	142460823	16677840	240	46379											
OR2A25	392138	broad.mit.edu	37	chr7	143771206	143771206	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcaaaatataattgaaggTgttttcttagaaaacactca	6	5	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143771206	A	A	143771206	1	1	36	0	1	0	0	0	0	0	0	0	11072	1711	59	5		5	OR2A25	7	143771206	5'Flank	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1310383	143771206	15367457	241	46380											
CNTNAP2	26047	broad.mit.edu	37	chr7	147914331	147914331	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtcattgtagggtatcGgcatcagacctctcctcatt	10	10	4	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147914331	A	A	147914331	1	1	36	0	1	0	0	0	0	0	0	0	3679	1131	39	4		4	CNTNAP2	7	147914331	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4143125	147914331	11224332	242	46381											
CNTNAP2	26047	broad.mit.edu	37	chr7	148080944	148080944	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctctcccccatgtcgtccGccaccgacccctggcacctg	7	23	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148080944	A	A	148080944	3	1	36	1	0	0	0	0	1	0	0	0	3679	1087	38	4	3765	4	CNTNAP2	7	148080944	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	166613	148080944	11057719	243	46382											
ZNF746	155061	broad.mit.edu	37	chr7	149191294	149191294	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaggcgtcccagggctaCcttaggggactcccccttgc	11	17	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149191294	T	T	149191294	5	4	36	1	0	0	0	0	0	0	1	0	18258	521	18	4	1636	4	ZNF746	7	149191294	Splice_Site	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1110350	149191294	9947369	244	46383											
KCNH2	3757	broad.mit.edu	37	chr7	150649468	150649468	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actacctcccaccacattccTggcctctcctctccctacac	2	22	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150649468	A	A	150649468	1	1	36	0	1	0	0	0	0	0	0	0	8102	1595	55	5		5	KCNH2	7	150649468	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1458174	150649468	8489195	245	46384											
CSMD1	64478	broad.mit.edu	37	chr8	2830776	2830776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcatcaccaagccgagacCcatgtgctggggtccccgga	12	14	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2830776	T	T	2830776	3	4	36	1	0	0	0	0	1	0	0	0	3978	623	22	4	1964	4	CSMD1	8	2830776	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08		2830776	143533246	246	46385											
DOK2	9046	broad.mit.edu	37	chr8	21738082	21738082	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggcgacagaaccagactCcatcaaaaagaaagaaaaga	9	9	1	5			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21738082	A	A	21738082	1	1	36	0	1	0	0	0	0	0	0	0	4737	870	30	3		3	DOK2	8	21738082	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	18907306	21738082	124625940	247	46386											
XPO7	23039	broad.mit.edu	37	chr8	21860756	21860756	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccacggtgctgaacatcatCatctttgaagactgtaggaa	9	9	3	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21860756	T	T	21860756	2	4	36	1	0	0	0	0	0	0	0	1	17576	816	29	4		4	XPO7	8	21860756	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	122674	21860756	124503266	248	46387											
CDCA2	157313	broad.mit.edu	37	chr8	25346185	25346185	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaagtgtacaaagagaGcacttcctaagaagagtcag	9	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25346185	A	A	25346185	3	1	36	1	0	0	0	0	1	0	0	0	3116	971	34	4	1697	4	CDCA2	8	25346185	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3485429	25346185	121017837	249	46388											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37732582	37732582	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccagccgccaggttctctGtagaagagaacaaatgcttc	9	12	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37732582	A	A	37732582	3	1	36	1	0	0	0	0	1	0	0	0	13001	1377	48	4	2794	4	RAB11FIP1	8	37732582	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	12386397	37732582	108631440	250	46389											
ADRB3	155	broad.mit.edu	37	chr8	37823585	37823585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggtcacagccaggtagcGgtccacggccagggcgcaca	15	13	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37823585	T	T	37823585	3	4	36	1	0	0	0	0	1	0	0	0	342	1116	39	1	831	1	ADRB3	8	37823585	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	91003	37823585	108540437	251	46390											
FGFR1	2260	broad.mit.edu	37	chr8	38285759	38285759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttagcagaacaggcacCgtgaccccatgtgccctcct	9	16	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38285759	A	A	38285759	1	1	36	0	1	0	0	0	0	0	0	0	5920	667	23	1		1	FGFR1	8	38285759	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	462174	38285759	108078263	252	46391											
ANK1	286	broad.mit.edu	37	chr8	41545818	41545818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaggcctgaggacacggcCtgtgatggatgtggcttccg	16	10	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41545818	A	A	41545818	1	1	36	0	1	0	0	0	0	0	0	0	620	696	24	2		2	ANK1	8	41545818	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3260059	41545818	104818204	253	46392											
PLAT	5327	broad.mit.edu	37	chr8	42048920	42048920	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggctcctcttctgaatcGggcatggatttcctgcgaag	11	11	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42048920	T	T	42048920	2	4	36	1	0	0	0	0	0	0	0	1	12116	1124	39	1		1	PLAT	8	42048920	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	503102	42048920	104315102	254	46393											
HOOK3	84376	broad.mit.edu	37	chr8	42823316	42823316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaggaagagttaagaaagGccaacgcagcgcgaagtcaa	13	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42823316	T	T	42823316	3	4	36	1	0	0	0	0	1	0	0	0	7351	1203	42	3	1123	3	HOOK3	8	42823316	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	774396	42823316	103540706	255	46394											
DNAJC5B	85479	broad.mit.edu	37	chr8	67012343	67012343	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtcgtaggggagcgtgtgGggcataaagtgctgtgaact	18	5	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67012343	A	A	67012343	1	1	36	0	1	0	0	0	0	0	0	0	4691	1247	43	4		4	DNAJC5B	8	67012343	3'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	24189027	67012343	79351679	256	46395											
CNBD1	168975	broad.mit.edu	37	chr8	88249423	88249423	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcttccagacattaagatCcaatatctttagagtcctga	5	10	2	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88249423	A	A	88249423	1	1	36	0	1	0	0	0	0	0	0	0	3623	870	30	3		3	CNBD1	8	88249423	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	21237080	88249423	58114599	257	46396											
GEM	2669	broad.mit.edu	37	chr8	95262780	95262780	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgcagaggtctcgatgaActtgcagtcaaacaccactg	10	11	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95262780	G	G	95262780	3	3	36	1	0	0	0	0	1	0	0	0	6393	43	2	5	245	5	GEM	8	95262780	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	7013357	95262780	51101242	258	46397											
VPS13B	157680	broad.mit.edu	37	chr8	100423445	100423445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctctgcatcctctccaGcatctgttgtttcctgactt	5	13	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100423445	T	T	100423445	1	4	36	0	1	0	0	0	0	0	0	0	17317	986	34	3		3	VPS13B	8	100423445	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	5160665	100423445	45940577	259	46398											
UBR5	51366	broad.mit.edu	37	chr8	103316092	103316092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaatttattaagtgtccCagctctaccttaaactctaa	3	10	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103316092	A	A	103316092	1	1	36	0	1	0	0	0	0	0	0	0	17031	609	21	2		2	UBR5	8	103316092	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2892647	103316092	43047930	260	46399											
RIMS2	9699	broad.mit.edu	37	chr8	104928827	104928827	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgttaaacaatatgtaatGtgccatttaataatttctga	6	4	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104928827	A	A	104928827	1	1	36	0	1	0	0	0	0	0	0	0	13479	1392	48	4		4	RIMS2	8	104928827	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1612735	104928827	41435195	261	46400											
CSMD3	114788	broad.mit.edu	37	chr8	113364659	113364659	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttacctgaagagaatatcCttgatcacactgaaaggata	7	8	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113364659	A	A	113364659	4	1	36	1	0	0	0	0	0	1	0	0	3980	690	24	2	5014	2	CSMD3	8	113364659	Nonsense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	8435832	113364659	32999363	262	46401											
CSMD3	114788	broad.mit.edu	37	chr8	114388918	114388918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggagttgacacccgccaCaaggaccgaaaggttcggcg	14	11	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114388918	A	A	114388918	1	1	36	0	1	0	0	0	0	0	0	0	3980	493	17	3		3	CSMD3	8	114388918	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1024259	114388918	31975104	263	46402											
WDR67	93594	broad.mit.edu	37	chr8	124140704	124140704	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttattgtggactatcaaacaCaggaacgagaaagaataagg	10	5	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124140704	G	G	124140704	3	3	36	1	0	0	0	0	1	0	0	0	17445	479	17	4	2122	4	WDR67	8	124140704	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	9751786	124140704	22223318	264	46403											
FER1L6	654463	broad.mit.edu	37	chr8	124872414	124872414	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagagtgtgatattccccttCctgtgtccatgtgatctcat	8	11	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124872414	T	T	124872414	1	4	36	0	1	0	0	0	0	0	0	0	5872	870	30	4		4	FER1L6	8	124872414	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	731710	124872414	21491608	265	46404											
ZFAT	57623	broad.mit.edu	37	chr8	135552765	135552765	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtagcccgggaccttgTgtaggaggctgcctgcctgc	14	12	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135552765	A	A	135552765	1	1	36	0	1	0	0	0	0	0	0	0	17758	1711	59	5		5	ZFAT	8	135552765	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	10680351	135552765	10811257	266	46405											
FAM135B	51059	broad.mit.edu	37	chr8	139209862	139209862	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaggcacaggtctcggtgCcacttgtgtgcgtgctgcat	13	11	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139209862	G	G	139209862	3	3	36	1	0	0	0	0	1	0	0	0	5495	740	26	4	3552	4	FAM135B	8	139209862	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3657097	139209862	7154160	267	46406											
COL22A1	169044	broad.mit.edu	37	chr8	139819975	139819975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaggagaggacaagtgaGgttctaaactacacctctgc	11	9	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139819975	T	T	139819975	1	4	36	0	1	0	0	0	0	0	0	0	3713	1015	35	2		2	COL22A1	8	139819975	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	610113	139819975	6544047	268	46407											
COL22A1	169044	broad.mit.edu	37	chr8	139856210	139856210	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactttatcaggactctggtGaaatatgggaacaagaacag	10	7	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139856210	A	A	139856210	1	1	36	0	1	0	0	0	0	0	0	0	3713	1305	45	4		4	COL22A1	8	139856210	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	36235	139856210	6507812	269	46408											
PTPRD	5789	broad.mit.edu	37	chr9	8500713	8500713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacagcagatcaagactGtgtcagaagggtgcaaactg	12	7	2	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8500713	T	T	8500713	1	4	36	0	1	0	0	0	0	0	0	0	12907	1392	48	3		3	PTPRD	9	8500713	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08		8500713	132712718	270	46409											
ACO1	48	broad.mit.edu	37	chr9	32436254	32436254	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgccttcttagcctaacTccacgagaattcaactccta	5	14	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32436254	C	C	32436254	2	2	36	1	0	0	0	0	0	0	0	1	146	1538	54	5		5	ACO1	9	32436254	Silent	SNP	T	TCGA-17-Z001-01A-01W-0746-08	23935541	32436254	108777177	271	46410											
TMEM8B	51754	broad.mit.edu	37	chr9	35853738	35853738	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcccatctggagcccgGgcccggggctgtggttacca	17	13	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35853738	T	T	35853738	2	4	36	1	0	0	0	0	0	0	0	1	16338	1219	43	2		2	TMEM8B	9	35853738	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3417484	35853738	105359693	272	46411											
PIP5K1B	8395	broad.mit.edu	37	chr9	71549788	71549788	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaaatatctgtatttgtcCttttcctttctgtctagctt	5	8	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71549788	G	G	71549788	1	3	36	0	1	0	0	0	0	0	0	0	12035	696	24	4		4	PIP5K1B	9	71549788	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	35696050	71549788	69663643	273	46412											
TRPM3	80036	broad.mit.edu	37	chr9	73236103	73236103	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actatatatgtagcatatatAtaatgggtaataaagagaat	7	2	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73236103	G	G	73236103	1	3	36	0	1	0	0	0	0	0	0	0	16712	464	16	5		5	TRPM3	9	73236103	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1686315	73236103	67977328	274	46413											
GDA	9615	broad.mit.edu	37	chr9	74838194	74838194	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcagacctgcaagatttctCagcacccttaaatcatcatt	5	12	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74838194	T	T	74838194	1	4	36	0	1	0	0	0	0	0	0	0	6369	841	29	4		4	GDA	9	74838194	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1602091	74838194	66375237	275	46414											
PRUNE2	158471	broad.mit.edu	37	chr9	79322001	79322001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttcagacttaggatcaGctgtgaccaagaacttatta	7	7	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79322001	T	T	79322001	3	4	36	1	0	0	0	0	1	0	0	0	12747	971	34	3	4125	3	PRUNE2	9	79322001	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4483807	79322001	61891430	276	46415											
VPS13A	23230	broad.mit.edu	37	chr9	79985620	79985620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggatattttaagagcagtGggtggtagcatataaaacat	11	3	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79985620	T	T	79985620	1	4	36	0	1	0	0	0	0	0	0	0	17316	1363	47	2		2	VPS13A	9	79985620	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	663619	79985620	61227811	277	46416											
C9orf79	286234	broad.mit.edu	37	chr9	90502663	90502663	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtgttgctcaggatccAgagcagctgcacctgaaagc	12	11	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90502663	G	G	90502663	2	3	36	1	0	0	0	0	0	0	0	1	2523	175	7	5		5	C9orf79	9	90502663	Silent	SNP	A	TCGA-17-Z001-01A-01W-0746-08	10517043	90502663	50710768	278	46417											
FAM22G	441457	broad.mit.edu	37	chr9	99697766	99697766	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggtcctgggggcagggcCcgtgtggcggggtgagagtg	24	7	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99697766	T	T	99697766	1	4	36	0	1	0	0	0	0	0	0	0	5593	638	22	4		4	FAM22G	9	99697766	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	9195103	99697766	41515665	279	46418											
KIAA1529	57653	broad.mit.edu	37	chr9	100137893	100137893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagacagggtggagtgggcGtgtcccagggagcacagctc	18	9	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100137893	T	T	100137893	1	4	36	0	1	0	0	0	0	0	0	0	8310	1160	40	3		3	KIAA1529	9	100137893	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	440127	100137893	41075538	280	46419											
COL15A1	1306	broad.mit.edu	37	chr9	101748343	101748343	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttggcttttgagtccagCgctggaatcttcatgggcaa	12	9	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101748343	T	T	101748343	2	4	36	1	0	0	0	0	0	0	0	1	3704	767	27	4		4	COL15A1	9	101748343	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1610450	101748343	39465088	281	46420											
COL15A1	1306	broad.mit.edu	37	chr9	101759499	101759499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaaagggtgagaaccacCctcattttacagacaagagg	10	8	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101759499	A	A	101759499	1	1	36	0	1	0	0	0	0	0	0	0	3704	638	22	2		2	COL15A1	9	101759499	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	11156	101759499	39453932	282	46421											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112816092	112816092	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttggaaggatgcatgaactCgttgaagggggtgtgacatg	16	5	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112816092	T	T	112816092	1	4	36	0	1	0	0	0	0	0	0	0	11504	899	31	4		4	PALM2-AKAP2	9	112816092	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	11056593	112816092	28397339	283	46422											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123156989	123156989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggaagaattacaaagcCatataaaaagatgatgctca	7	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123156989	T	T	123156989	1	4	36	0	1	0	0	0	0	0	0	0	3176	609	21	4		4	CDK5RAP2	9	123156989	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	10340897	123156989	18056442	284	46423											
ODF2	4957	broad.mit.edu	37	chr9	131235402	131235402	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgggcagggtctttacgcGtcatcaggcagactttatga	13	9	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131235402	A	A	131235402	1	1	36	0	1	0	0	0	0	0	0	0	10922	1160	40	4		4	ODF2	9	131235402	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	8078413	131235402	9978029	285	46424											
SPTAN1	6709	broad.mit.edu	37	chr9	131348057	131348057	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaggatgtgaaggccaAgcttcacgagctgaaccaaa	12	9	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131348057	G	G	131348057	3	3	36	1	0	0	0	0	1	0	0	0	15235	72	3	5	2661	5	SPTAN1	9	131348057	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	112655	131348057	9865374	286	46425											
FCN2	2220	broad.mit.edu	37	chr9	137778148	137778148	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacacaggccccggggatgcTgcggtgctctccgccctctg	13	16	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137778148	G	G	137778148	1	3	36	0	1	0	0	0	0	0	0	0	5849	1595	55	5		5	FCN2	9	137778148	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	6430091	137778148	3435283	287	46426											
ZMYND11	10771	broad.mit.edu	37	chr10	267073	267073	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacattagtttcaattttGttcttagtcattgcagatat	7	5	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	267073	T	T	267073	1	4	36	0	1	0	0	0	0	0	0	0	17832	1392	48	3		3	ZMYND11	10	267073	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08		267073	135267674	288	46427											
DIP2C	22982	broad.mit.edu	37	chr10	445248	445248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggttctaggtgagagggCacgcttcagtgagaaccaga	14	8	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	445248	A	A	445248	1	1	36	0	1	0	0	0	0	0	0	0	4569	725	25	3		3	DIP2C	10	445248	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	178175	445248	135089499	289	46428											
RBM17	84991	broad.mit.edu	37	chr10	6146721	6146721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcctgtttctgctaccAcctgactaggcacgtggcct	10	13	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6146721	T	T	6146721	1	4	36	0	1	0	0	0	0	0	0	0	13227	174	6	5		5	RBM17	10	6146721	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	5701473	6146721	129388026	290	46429											
MCM10	55388	broad.mit.edu	37	chr10	13237238	13237238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcaccaccaccaagacCaaaactgagtgctttagcag	8	12	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13237238	A	A	13237238	3	1	36	1	0	0	0	0	1	0	0	0	9478	594	21	2	1996	2	MCM10	10	13237238	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	7090517	13237238	122297509	291	46430											
ITGA8	8516	broad.mit.edu	37	chr10	15689130	15689130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtaatcaactagactaGtaaatttccattggtatttt	5	5	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15689130	T	T	15689130	1	4	36	0	1	0	0	0	0	0	0	0	7952	1044	36	3		3	ITGA8	10	15689130	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2451892	15689130	119845617	292	46431											
ITGA8	8516	broad.mit.edu	37	chr10	15730022	15730022	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttctttggttccattaactCtgatctttctgttgtctgtc	7	9	5	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15730022	A	A	15730022	3	1	36	1	0	0	0	0	1	0	0	0	7952	913	32	3	2944	3	ITGA8	10	15730022	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	40892	15730022	119804725	293	46432											
ARHGAP21	57584	broad.mit.edu	37	chr10	24909728	24909728	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatacagagggagcctccaCagcttgagatctgctgcttg	12	10	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24909728	T	T	24909728	3	4	36	1	0	0	0	0	1	0	0	0	873	478	17	4	4852	4	ARHGAP21	10	24909728	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	9179706	24909728	110625019	294	46433											
PRTFDC1	56952	broad.mit.edu	37	chr10	25147365	25147365	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaacaaaacccatattttaGaatgtgatgccaatctgact	5	8	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25147365	A	A	25147365	1	1	36	0	1	0	0	0	0	0	0	0	12743	957	33	4		4	PRTFDC1	10	25147365	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	237637	25147365	110387382	295	46434											
KIAA1462	57608	broad.mit.edu	37	chr10	30315636	30315636	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagccgcacttcctcctGccataaaaggcatcagtgga	9	14	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30315636	T	T	30315636	2	4	36	1	0	0	0	0	0	0	0	1	8304	1306	46	3		3	KIAA1462	10	30315636	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	5168271	30315636	105219111	296	46435											
BMS1	9790	broad.mit.edu	37	chr10	43293007	43293007	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagaactagaaatgttttaGtttctctgattatttagatg	7	4	2	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43293007	C	C	43293007	1	2	36	0	1	0	0	0	0	0	0	0	1478	1044	36	4		4	BMS1	10	43293007	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	12977371	43293007	92241740	297	46436											
ZNF485	220992	broad.mit.edu	37	chr10	44112694	44112694	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaggccttgttgaacatcaGagactccatactggggaaaa	10	9	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44112694	C	C	44112694	3	2	36	1	0	0	0	0	1	0	0	0	18065	933	33	4	1217	4	ZNF485	10	44112694	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	819687	44112694	91422053	298	46437											
RBP3	5949	broad.mit.edu	37	chr10	48388966	48388966	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtgccctccaccaaggCccccaggctttggtggaact	10	17	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48388966	T	T	48388966	3	4	36	1	0	0	0	0	1	0	0	0	13265	739	26	4	1847	4	RBP3	10	48388966	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4276272	48388966	87145781	299	46438											
PARG	8505	broad.mit.edu	37	chr10	51620499	51620499	+	Intron	DEL	G	-	-													tttataggctcactgaaggcGgaaaattttttcccatttta					rs78584401	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51620499	-	-	51620499	6	5	36	0	1	1	0	1	0	0	0	0	11542	1131	39	0		0	PARG	10	51620499	Intron	DEL	G	TCGA-17-Z001-01A-01W-0746-08	3231533	51620499	83914248	300	46439											
SGMS1	259230	broad.mit.edu	37	chr10	52067690	52067690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaccctgtccaagccagCaacatcaagccagaaacaac	6	15	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52067690	A	A	52067690	1	1	36	0	1	0	0	0	0	0	0	0	14327	725	25	3		3	SGMS1	10	52067690	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	447191	52067690	83467057	301	46440											
PCDH15	65217	broad.mit.edu	37	chr10	56128729	56128729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacatcggaagtcacataCttcttctgagtactattttt	5	8	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128729	A	A	56128729	1	1	36	0	1	0	0	0	0	0	0	0	11605	580	20	3		3	PCDH15	10	56128729	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4061039	56128729	79406018	302	46441											
FAM13C	220965	broad.mit.edu	37	chr10	61028191	61028191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctatgataggtccaggttGgcccatgggaacagagctgt	13	9	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61028191	T	T	61028191	1	4	36	0	1	0	0	0	0	0	0	0	5500	1363	47	2		2	FAM13C	10	61028191	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4899462	61028191	74506556	303	46442											
ANK3	288	broad.mit.edu	37	chr10	61832647	61832647	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgggcagactgggtgccttCtcctcggccttggggaagcc	15	13	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61832647	T	T	61832647	2	4	36	1	0	0	0	0	0	0	0	1	622	912	32	4		4	ANK3	10	61832647	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	804456	61832647	73702100	304	46443											
LRRTM3	347731	broad.mit.edu	37	chr10	68686880	68686880	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttaggtttgtcccttcGctataacagccttcaaaaac	6	11	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68686880	A	A	68686880	3	1	36	1	0	0	0	0	1	0	0	0	9128	1087	38	4	212	4	LRRTM3	10	68686880	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6854233	68686880	66847867	305	46444											
COL13A1	1305	broad.mit.edu	37	chr10	71697559	71697559	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagccagcggaaagctaagGttctagagtctgagcatcca	11	10	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71697559	A	A	71697559	1	1	36	0	1	0	0	0	0	0	0	0	3702	1276	44	4		4	COL13A1	10	71697559	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3010679	71697559	63837188	306	46445											
AGAP5	729092	broad.mit.edu	37	chr10	75457454	75457454	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggacacaccgacccctgTtgctggtcaaactcgaggct	12	13	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75457454	C	C	75457454	2	2	36	1	0	0	0	0	0	0	0	1	371	1722	60	5		5	AGAP5	10	75457454	Silent	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3759895	75457454	60077293	307	46446											
MYST4	23522	broad.mit.edu	37	chr10	76602482	76602482	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaggatggatgtttgtaaGatgttgcttaatacagtctg	11	3	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76602482	C	C	76602482	1	2	36	0	1	0	0	0	0	0	0	0	10199	957	33	4		4	MYST4	10	76602482	5'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1145028	76602482	58932265	308	46447											
MYST4	23522	broad.mit.edu	37	chr10	76780283	76780283	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattatttctagtggctcctGttctaagctctgggaatgcc	9	9	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76780283	A	A	76780283	1	1	36	0	1	0	0	0	0	0	0	0	10199	1392	48	4		4	MYST4	10	76780283	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	177801	76780283	58754464	309	46448											
GRID1	2894	broad.mit.edu	37	chr10	87780804	87780811	+	Intron	DEL	CCTGCCTG	-	-													atgtggttaattcaacctgaCctgcctgcctgcctgcctgc					rs112303464		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87780811	-	-	87780804	6	5	36	0	1	1	0	1	0	0	0	0	6837	522	18	0		0	GRID1	10	87780804	Intron	DEL	CCTGCCTG	TCGA-17-Z001-01A-01W-0746-08	11000521	87780804	47753943	310	46449											
CYP26A1	1592	broad.mit.edu	37	chr10	94836933	94836933	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattcttctcaaaatatttAcagtggagctggccaggcat	8	8	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94836933	G	G	94836933	3	3	36	1	0	0	0	0	1	0	0	0	4188	391	14	5	1392	5	CYP26A1	10	94836933	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	7056129	94836933	40697814	311	46450											
DNTT	1791	broad.mit.edu	37	chr10	98092504	98092504	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaactcaaggcatcctgtCcacacatggccaagtatgac	7	13	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98092504	A	A	98092504	1	1	36	0	1	0	0	0	0	0	0	0	4720	870	30	3		3	DNTT	10	98092504	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3255571	98092504	37442243	312	46451											
MGEA5	10724	broad.mit.edu	37	chr10	103550754	103550754	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaataaagggggtcacatCtacagtgcccaaggcataac	9	9	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103550754	A	A	103550754	3	1	36	1	0	0	0	0	1	0	0	0	9648	913	32	3	409	3	MGEA5	10	103550754	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5458250	103550754	31983993	313	46452											
NRAP	4892	broad.mit.edu	37	chr10	115349505	115349505	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttccactttgtaggagccagGaggggtccagccaacacctc	11	13	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115349505	C	C	115349505	3	2	36	1	0	0	0	0	1	0	0	0	10733	1174	41	4	192	4	NRAP	10	115349505	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	11798751	115349505	20185242	314	46453											
ABLIM1	3983	broad.mit.edu	37	chr10	116226214	116226215	+	Intron	INS	-	AAC	AAC													catacctaccagatctgcatINSaacaagaaaaggtaggtcac					rs142931560	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAC	116226215	AAC	AAC	116226214	6	5	36	0	1	1	1	0	0	0	0	0	94	1421	49	0		0	ABLIM1	10	116226214	Intron	INS	-	TCGA-17-Z001-01A-01W-0746-08	876709	116226214	19308533	315	46454											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236702	118236702	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggatttctttagtaggaGcaatgaagaaaagtgtctcc	11	5	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118236702	A	A	118236702	1	1	36	0	1	0	0	0	0	0	0	0	12247	986	34	4		4	PNLIPRP3	10	118236702	3'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2010488	118236702	17298045	316	46455											
SEC23IP	11196	broad.mit.edu	37	chr10	121658365	121658365	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggctaatccttacattgCaccaccccagctgcagcagt	8	15	0	0	rs145784334	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121658365	T	T	121658365	3	4	36	1	0	0	0	0	1	0	0	0	14106	710	25	4	596	4	SEC23IP	10	121658365	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3421663	121658365	13876382	317	46456											
ADAM12	8038	broad.mit.edu	37	chr10	127818758	127818758	+	Intron	DEL	T	-	-													ctggggctactctagttgcaTttttttttttccttttactt					rs72414071		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127818758	-	-	127818758	6	5	36	0	1	1	0	1	0	0	0	0	236	1508	52	0		0	ADAM12	10	127818758	Intron	DEL	T	TCGA-17-Z001-01A-01W-0746-08	6160393	127818758	7715989	318	46457											
OR51E1	143503	broad.mit.edu	37	chr11	4665871	4665871	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccacacggcaacaccccTtgccttgtactctttaccct	5	17	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4665871	A	A	4665871	1	1	36	0	1	0	0	0	0	0	0	0	11188	1624	56	5		5	OR51E1	11	4665871	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08		4665871	130340645	319	46458											
TRIM5	85363	broad.mit.edu	37	chr11	5949724	5949724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcccgccatttattcccGccatctcggcagccacctcg	7	18	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5949724	T	T	5949724	1	4	36	0	1	0	0	0	0	0	0	0	16650	1102	38	3		3	TRIM5	11	5949724	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1283853	5949724	129056792	320	46459											
SYT9	143425	broad.mit.edu	37	chr11	7334892	7334892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaaggacttttctgggaCttcagatccttatgtcaaga	9	10	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7334892	A	A	7334892	3	1	36	1	0	0	0	0	1	0	0	0	15600	565	20	3	774	3	SYT9	11	7334892	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1385168	7334892	127671624	321	46460											
KCNA4	3739	broad.mit.edu	37	chr11	30033380	30033380	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattcattctcggggagggcCctgtcttcctcttctctcac	8	14	6	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30033380	G	G	30033380	3	3	36	1	0	0	0	0	1	0	0	0	8075	622	22	4	1119	4	KCNA4	11	30033380	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	22698488	30033380	104973136	322	46461											
TRIM44	54765	broad.mit.edu	37	chr11	35827975	35827975	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatcatcccctccccttGtgtgtatgtgacagcgtgta	9	11	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35827975	T	T	35827975	1	4	36	0	1	0	0	0	0	0	0	0	16644	1392	48	3		3	TRIM44	11	35827975	3'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	5794595	35827975	99178541	323	46462											
C11orf74	119710	broad.mit.edu	37	chr11	36680708	36680708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagagaaaggacaccaGcccagacttagagaaatcct	10	10	0	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36680708	T	T	36680708	3	4	36	1	0	0	0	0	1	0	0	0	1674	971	34	3	656	3	C11orf74	11	36680708	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	852733	36680708	98325808	324	46463											
LRRC4C	57689	broad.mit.edu	37	chr11	40136613	40136613	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacatttgtgaaatttaaCgtaccatcactgagcacagc	7	9	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40136613	A	A	40136613	2	1	36	1	0	0	0	0	0	0	0	1	9095	523	19	3		3	LRRC4C	11	40136613	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3455905	40136613	94869903	325	46464											
LRRC4C	57689	broad.mit.edu	37	chr11	40788469	40788469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagggagggaaggaggaGccagaaaacaaccagaaaca	15	6	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40788469	T	T	40788469	1	4	36	0	1	0	0	0	0	0	0	0	9095	986	34	3		3	LRRC4C	11	40788469	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	651856	40788469	94218047	326	46465											
CHST1	8534	broad.mit.edu	37	chr11	45671313	45671313	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctcctcctccgaggcggcGatcttgtagcccagctgggc	13	15	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45671313	A	A	45671313	2	1	36	1	0	0	0	0	0	0	0	1	3428	1048	37	4		4	CHST1	11	45671313	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4882844	45671313	89335203	327	46466											
OR5W2	390148	broad.mit.edu	37	chr11	55681285	55681285	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaacttggccggaaataCataaagagcagagttccctg	11	8	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55681285	T	T	55681285	3	4	36	1	0	0	0	0	1	0	0	0	11279	478	17	4	160	4	OR5W2	11	55681285	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	10009972	55681285	79325231	328	46467											
SSRP1	6749	broad.mit.edu	37	chr11	57094710	57094710	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaagaggccatatttccCcagtgacttgaatgccctat	9	10	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57094710	T	T	57094710	1	4	36	0	1	0	0	0	0	0	0	0	15312	638	22	4		4	SSRP1	11	57094710	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1413425	57094710	77911806	329	46468											
TMEM132A	54972	broad.mit.edu	37	chr11	60697893	60697893	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactggagccagggaggtcaGatggctttggctccttgtct	15	9	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60697893	A	A	60697893	1	1	36	0	1	0	0	0	0	0	0	0	16168	957	33	4		4	TMEM132A	11	60697893	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3603183	60697893	74308623	330	46469											
TMEM132A	54972	broad.mit.edu	37	chr11	60699470	60699470	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccaggctgaggagctggtGaatacagcaccactgactgg	13	12	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60699470	A	A	60699470	2	1	36	1	0	0	0	0	0	0	0	1	16168	1277	45	4		4	TMEM132A	11	60699470	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1577	60699470	74307046	331	46470											
CHRM1	1128	broad.mit.edu	37	chr11	62677713	62677713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctccctctgaggatgtgaggGactccatggagccttcgtcc	12	13	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62677713	T	T	62677713	3	4	36	1	0	0	0	0	1	0	0	0	3407	1174	41	3	526	3	CHRM1	11	62677713	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1978243	62677713	72328803	332	46471											
SLC22A24	283238	broad.mit.edu	37	chr11	62911085	62911085	+	Frame_Shift_Del	DEL	T	-	-													cattgtcagacacagtgtcaTtgtccaggagggggacccag							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62911085	-	-	62911085	7	5	36	1	0	1	0	1	0	0	0	0	14567	1493	52	0	1526	0	SLC22A24	11	62911085	Frame_Shift_Del	DEL	T	TCGA-17-Z001-01A-01W-0746-08	233372	62911085	72095431	333	46472											
MEN1	4221	broad.mit.edu	37	chr11	64575348	64575348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaggggacaaggctgggGggagggaacaatacccgctc	17	8	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64575348	T	T	64575348	1	4	36	0	1	0	0	0	0	0	0	0	9565	1247	43	2		2	MEN1	11	64575348	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1664263	64575348	70431168	334	46473											
KRTAP5-7	440050	broad.mit.edu	37	chr11	71238988	71238988	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcctgccttttcctaaGgagagtccaccctaattaat	6	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71238988	T	T	71238988	1	4	36	0	1	0	0	0	0	0	0	0	8638	1015	35	2		2	KRTAP5-7	11	71238988	3'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6663640	71238988	63767528	335	46474											
P4HA3	283208	broad.mit.edu	37	chr11	73979017	73979017	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggaacccctgcctgttaTaggctcccagtctgttgggg	12	12	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73979017	C	C	73979017	1	2	36	0	1	0	0	0	0	0	0	0	11452	1421	49	5		5	P4HA3	11	73979017	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	2740029	73979017	61027499	336	46475											
DLG2	1740	broad.mit.edu	37	chr11	83183817	83183817	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagaatgaggtcttcttgtCctcctgagaagagaaggaaa	11	6	2	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83183817	T	T	83183817	3	4	36	1	0	0	0	0	1	0	0	0	4595	855	30	4	654	4	DLG2	11	83183817	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	9204800	83183817	51822699	337	46476											
SYTL2	54843	broad.mit.edu	37	chr11	85457012	85457012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccacgacattagatttcCccaagcagagtctcttgaga	7	12	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85457012	A	A	85457012	1	1	36	0	1	0	0	0	0	0	0	0	15602	638	22	2		2	SYTL2	11	85457012	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2273195	85457012	49549504	338	46477											
PICALM	8301	broad.mit.edu	37	chr11	85782283	85782283	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacagatgccaactcacCatggccaatactgaacttct	5	14	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85782283	A	A	85782283	1	1	36	0	1	0	0	0	0	0	0	0	11975	609	21	2		2	PICALM	11	85782283	5'Flank	SNP	C	TCGA-17-Z001-01A-01W-0746-08	325271	85782283	49224233	339	46478											
CTSC	1075	broad.mit.edu	37	chr11	88029476	88029476	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccaagagacatctgaagCctcacagagaatcatgcaaa	7	10	3	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88029476	T	T	88029476	1	4	36	0	1	0	0	0	0	0	0	0	4065	754	26	4		4	CTSC	11	88029476	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2247193	88029476	46977040	340	46479											
TRPC6	7225	broad.mit.edu	37	chr11	101375222	101375222	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcaaagcatccccaactcGagagaggttttctttcttga	8	10	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101375222	T	T	101375222	2	4	36	1	0	0	0	0	0	0	0	1	16708	1066	37	3		3	TRPC6	11	101375222	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	13345746	101375222	33631294	341	46480											
MMP8	4317	broad.mit.edu	37	chr11	102584511	102584511	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggaaaactgcatcaactTtactctctattcctggaaag	7	10	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102584511	G	G	102584511	3	3	36	1	0	0	0	0	1	0	0	0	9762	1841	64	5	143	5	MMP8	11	102584511	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1209289	102584511	32422005	342	46481											
DYNC2H1	79659	broad.mit.edu	37	chr11	103090682	103090682	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagaacttgaaagactgaaGcacagaatagcagaagaagt	10	6	0	7			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103090682	A	A	103090682	2	1	36	1	0	0	0	0	0	0	0	1	4886	962	34	4		4	DYNC2H1	11	103090682	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	506171	103090682	31915834	343	46482											
TECTA	7007	broad.mit.edu	37	chr11	121000540	121000540	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgcggcttctacaatgCcaacgccagtgacgagttct	10	12	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121000540	T	T	121000540	3	4	36	1	0	0	0	0	1	0	0	0	15869	739	26	4	2595	4	TECTA	11	121000540	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	17909858	121000540	14005976	344	46483											
SPATA19	219938	broad.mit.edu	37	chr11	133715076	133715076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcctcactttccacaaCgtcaatgtcctggaacaaat	5	14	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133715076	A	A	133715076	3	1	36	1	0	0	0	0	1	0	0	0	15120	536	19	3	435	3	SPATA19	11	133715076	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	12714536	133715076	1291440	345	46484											
CACNA1C	775	broad.mit.edu	37	chr12	2775889	2775889	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgtggtgaccctcctcCggcggattcagccgccacta	12	14	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2775889	A	A	2775889	2	1	36	1	0	0	0	0	0	0	0	1	2566	643	23	1		1	CACNA1C	12	2775889	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08		2775889	131076006	346	46485											
DYRK4	8798	broad.mit.edu	37	chr12	4708364	4708364	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccgtcctgccatggacacActctggaaatacccattcta	6	15	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4708364	T	T	4708364	1	4	36	0	1	0	0	0	0	0	0	0	4898	174	6	5		5	DYRK4	12	4708364	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1932475	4708364	129143531	347	46486											
C12orf53	196500	broad.mit.edu	37	chr12	6809683	6809683	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggccttgtcccgggcgaggGaccgcgtcgggaggggcagg	21	11	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6809683	T	T	6809683	1	4	36	0	1	0	0	0	0	0	0	0	1711	1189	41	3		3	C12orf53	12	6809683	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2101319	6809683	127042212	348	46487											
CLEC9A	283420	broad.mit.edu	37	chr12	10191672	10191672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggtgagccttccccataGctaacccatactgcctgctc	9	15	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10191672	T	T	10191672	1	4	36	0	1	0	0	0	0	0	0	0	3554	986	34	3		3	CLEC9A	12	10191672	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3381989	10191672	123660223	349	46488											
GRIN2B	2904	broad.mit.edu	37	chr12	13769623	13769623	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaacacaagaatcagaaacCactggccacaacataacaaa	5	11	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13769623	G	G	13769623	1	3	36	0	1	0	0	0	0	0	0	0	6846	609	21	4		4	GRIN2B	12	13769623	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3577951	13769623	120082272	350	46489											
SLCO1B3	28234	broad.mit.edu	37	chr12	21032336	21032336	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagaaaaaccatatttgtaTaattatagcttttttctctt	3	6	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21032336	A	A	21032336	1	1	36	0	1	0	0	0	0	0	0	0	14838	1421	49	5		5	SLCO1B3	12	21032336	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	7262713	21032336	112819559	351	46490											
KIF21A	55605	broad.mit.edu	37	chr12	39725586	39725586	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtaacatccaatgtctcaCcttcttcctgtataaaatca	3	12	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39725586	G	G	39725586	3	3	36	1	0	0	0	0	1	0	0	0	8358	507	18	4	2033	4	KIF21A	12	39725586	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	18693250	39725586	94126309	352	46491											
GPR84	53831	broad.mit.edu	37	chr12	54756620	54756620	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactctggcatccagaatgTtgagcagcaagaaggggatg	15	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54756620	C	C	54756620	3	2	36	1	0	0	0	0	1	0	0	0	6779	1725	60	5	178	5	GPR84	12	54756620	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	15031034	54756620	79095275	353	46492											
LRP1	4035	broad.mit.edu	37	chr12	57602924	57602924	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagacgccaagctttcagtCatcggcagcatccggctcaa	10	14	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57602924	T	T	57602924	2	4	36	1	0	0	0	0	0	0	0	1	9038	813	29	4		4	LRP1	12	57602924	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2846304	57602924	76248971	354	46493											
KIF5A	3798	broad.mit.edu	37	chr12	57961483	57961483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagagtctcactctgtcGcccgggctggtttgcagtgg	14	11	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57961483	T	T	57961483	1	4	36	0	1	0	0	0	0	0	0	0	8375	1102	38	3		3	KIF5A	12	57961483	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	358559	57961483	75890412	355	46494											
C12orf56	115749	broad.mit.edu	37	chr12	64732106	64732106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactccaccagctatgtcCtctggcaggtagacatagct	8	13	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64732106	A	A	64732106	1	1	36	0	1	0	0	0	0	0	0	0	1713	696	24	2		2	C12orf56	12	64732106	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6770623	64732106	69119789	356	46495											
MSRB3	253827	broad.mit.edu	37	chr12	65813061	65813061	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagatgtctgccatgatcTtggcaaggtcctgagatttg	11	10	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65813061	A	A	65813061	1	1	36	0	1	0	0	0	0	0	0	0	9983	1624	56	5		5	MSRB3	12	65813061	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1080955	65813061	68038834	357	46496											
GRIP1	23426	broad.mit.edu	37	chr12	66800225	66800225	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttctgttagtgaatgcaaAgtaacacatgactaatgatg	9	5	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66800225	C	C	66800225	1	2	36	0	1	0	0	0	0	0	0	0	6853	87	3	5		5	GRIP1	12	66800225	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	987164	66800225	67051670	358	46497											
RAP1B	5908	broad.mit.edu	37	chr12	69047879	69047879	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgttttttaacgttcctttCtttctattgtaggagcaatt	6	6	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69047879	T	T	69047879	1	4	36	0	1	0	0	0	0	0	0	0	13144	928	32	4		4	RAP1B	12	69047879	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2247654	69047879	64804016	359	46498											
PTPRB	5787	broad.mit.edu	37	chr12	70949687	70949687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgtcttcaaccacctcGctggtcatgccggccgactg	11	15	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70949687	T	T	70949687	3	4	36	1	0	0	0	0	1	0	0	0	12904	1078	38	3	1755	3	PTPRB	12	70949687	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1901808	70949687	62902208	360	46499											
ZDHHC17	23390	broad.mit.edu	37	chr12	77220633	77220633	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaaggtaacaatgattcaGattgagattacttgaaacat	7	5	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77220633	T	T	77220633	1	4	36	0	1	0	0	0	0	0	0	0	17733	957	33	3		3	ZDHHC17	12	77220633	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6270946	77220633	56631262	361	46500											
NEDD1	121441	broad.mit.edu	37	chr12	97330344	97330344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatataagctaatatacctGtacacactaacatttctaca	2	9	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97330344	T	T	97330344	1	4	36	0	1	0	0	0	0	0	0	0	10404	1392	48	3		3	NEDD1	12	97330344	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	20109711	97330344	36521551	362	46501											
STAB2	55576	broad.mit.edu	37	chr12	104118506	104118506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttggcaactctgggcttaCctgtacagggctggagatct	12	9	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104118506	A	A	104118506	1	1	36	0	1	0	0	0	0	0	0	0	15356	522	18	3		3	STAB2	12	104118506	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6788162	104118506	29733389	363	46502											
DAO	1610	broad.mit.edu	37	chr12	109292644	109292644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaggacacttcaggacGggaagatgccaccgctggga	14	9	1	2	rs140881184	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109292644	T	T	109292644	1	4	36	0	1	0	0	0	0	0	0	0	4264	1131	39	1		1	DAO	12	109292644	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	5174138	109292644	24559251	364	46503											
C12orf51	283450	broad.mit.edu	37	chr12	112740065	112740065	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgatggtgttaactcctgctCgaagggcaggtggtctctta	13	8	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112740065	G	G	112740065	1	3	36	0	1	0	0	0	0	0	0	0	1709	899	31	4		4	C12orf51	12	112740065	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3447421	112740065	21111830	365	46504											
OAS3	4940	broad.mit.edu	37	chr12	113396287	113396287	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatctttgtggctttatctAcctttggtctttgatgatgg	9	8	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113396287	T	T	113396287	1	4	36	0	1	0	0	0	0	0	0	0	10896	406	14	5		5	OAS3	12	113396287	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	656222	113396287	20455608	366	46505											
DTX1	1840	broad.mit.edu	37	chr12	113532805	113532806	+	Intron	INS	-	G	G													cagggaacggagtggggtttINSgggggggtgctgggaactca							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113532806	G	G	113532805	6	5	36	0	1	1	1	0	0	0	0	0	4833	1827	63	0		0	DTX1	12	113532805	Intron	INS	-	TCGA-17-Z001-01A-01W-0746-08	136518	113532805	20319090	367	46506											
LHX5	64211	broad.mit.edu	37	chr12	113907200	113907201	+	Intron	INS	-	C	C													gtgggactgcatccagccctINSccccagcccctgacctcttc							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113907201	C	C	113907200	6	5	36	0	1	1	1	0	0	0	0	0	8846	1566	54	0		0	LHX5	12	113907200	Intron	INS	-	TCGA-17-Z001-01A-01W-0746-08	374395	113907200	19944695	368	46507											
TBX3	6926	broad.mit.edu	37	chr12	115117580	115117580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgcttgtaccgagcccaCctccttggagtaccccctgg	9	18	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115117580	A	A	115117580	1	1	36	0	1	0	0	0	0	0	0	0	15781	522	18	3		3	TBX3	12	115117580	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1210380	115117580	18734315	369	46508											
RPLP0	6175	broad.mit.edu	37	chr12	120636435	120636435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgccattgtcgaacacCtgctggatgaccagcccaaa	9	13	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120636435	A	A	120636435	3	1	36	1	0	0	0	0	1	0	0	0	13715	680	24	2	392	2	RPLP0	12	120636435	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5518855	120636435	13215460	370	46509											
KDM2B	84678	broad.mit.edu	37	chr12	121878958	121878958	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagacgggctgtcgccggatGatgccactcagcatcagggg	16	11	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121878958	A	A	121878958	2	1	36	1	0	0	0	0	0	0	0	1	8195	1280	45	4		4	KDM2B	12	121878958	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1242523	121878958	11972937	371	46510											
RIMBP2	23504	broad.mit.edu	37	chr12	130912951	130912951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaagaggccagattgagCttgccaaccctttccctgct	8	14	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130912951	A	A	130912951	1	1	36	0	1	0	0	0	0	0	0	0	13472	812	28	3		3	RIMBP2	12	130912951	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	9033993	130912951	2938944	372	46511											
GPR133	283383	broad.mit.edu	37	chr12	131621484	131621484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctaactacgtgcaaagggCtctaatctctgcgtttcttc	7	12	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131621484	T	T	131621484	1	4	36	0	1	0	0	0	0	0	0	0	6708	812	28	4		4	GPR133	12	131621484	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	708533	131621484	2230411	373	46512											
TPTE2	93492	broad.mit.edu	37	chr13	20068955	20068955	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatatgggcagagtcagaCacaatgcgtaattctaatgt	9	7	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20068955	T	T	20068955	1	4	36	0	1	0	0	0	0	0	0	0	16555	493	17	4		4	TPTE2	13	20068955	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08		20068955	95100923	374	46513											
N6AMT2	221143	broad.mit.edu	37	chr13	21306050	21306050	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttttctgagacattcctcCgaaagatagggaggatctgc	11	8	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21306050	T	T	21306050	2	4	36	1	0	0	0	0	0	0	0	1	10209	639	23	4		4	N6AMT2	13	21306050	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1237095	21306050	93863828	375	46514											
SERP2	387923	broad.mit.edu	37	chr13	44967171	44967172	+	Intron	DEL	AG	-	-													gtttcacagaggccaagggaAgagagtttcaagcaggaagt					rs143237482		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44967172	-	-	44967171	6	5	36	0	1	1	0	1	0	0	0	0	14198	87	3	0		0	SERP2	13	44967171	Intron	DEL	AG	TCGA-17-Z001-01A-01W-0746-08	23661121	44967171	70202707	376	46515											
KLHL1	57626	broad.mit.edu	37	chr13	70549713	70549713	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagtctggcacttttaaacAtgtgaatgcatgtttccagt	8	9	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70549713	T	T	70549713	1	4	36	0	1	0	0	0	0	0	0	0	8436	232	8	5		5	KLHL1	13	70549713	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	25582542	70549713	44620165	377	46516											
FARP1	10160	broad.mit.edu	37	chr13	99042092	99042092	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcactgatggtcatgctAtaataaaatacacagcgaaa	7	7	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99042092	G	G	99042092	1	3	36	0	1	0	0	0	0	0	0	0	5733	464	16	5		5	FARP1	13	99042092	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	28492379	99042092	16127786	378	46517											
NALCN	259232	broad.mit.edu	37	chr13	101728244	101728244	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttttccacagatggagaAaaacctaaatacaatcacac	5	9	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101728244	G	G	101728244	3	3	36	1	0	0	0	0	1	0	0	0	10242	14	1	5	1322	5	NALCN	13	101728244	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2686152	101728244	13441634	379	46518											
COL4A1	1282	broad.mit.edu	37	chr13	110844537	110844537	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaacttctgatatgtacAtgaactcagacaggtttact	8	8	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110844537	T	T	110844537	1	4	36	0	1	0	0	0	0	0	0	0	3721	232	8	5		5	COL4A1	13	110844537	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	9116293	110844537	4325341	380	46519											
ATP11A	23250	broad.mit.edu	37	chr13	113464905	113464905	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccctctctccctgcttcctCtctcccttctttccttcctt	1	21	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113464905	G	G	113464905	1	3	36	0	1	0	0	0	0	0	0	0	1123	928	32	4		4	ATP11A	13	113464905	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2620368	113464905	1704973	381	46520											
PABPN1	8106	broad.mit.edu	37	chr14	23792073	23792073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actattctcggttgtgggtaCagcagggaacagcacagacc	12	10	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23792073	A	A	23792073	1	1	36	0	1	0	0	0	0	0	0	0	11462	493	17	3		3	PABPN1	14	23792073	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08		23792073	83557467	382	46521											
NPAS3	64067	broad.mit.edu	37	chr14	34243500	34243500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgctgttatatctgggAtgtaaatttgactggtgtcc	11	5	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34243500	T	T	34243500	1	4	36	0	1	0	0	0	0	0	0	0	10659	348	12	5		5	NPAS3	14	34243500	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	10451427	34243500	73106040	383	46522											
LRFN5	145581	broad.mit.edu	37	chr14	42356187	42356187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattacaaatgatatgttcaGtggtctttccaatcttcatc	5	8	4	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42356187	T	T	42356187	3	4	36	1	0	0	0	0	1	0	0	0	9028	1029	36	3	361	3	LRFN5	14	42356187	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	8112687	42356187	64993353	384	46523											
SLC35F4	341880	broad.mit.edu	37	chr14	58033246	58033246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagattaggattgggtatGtcagcaccaccccaacattc	10	10	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58033246	T	T	58033246	3	4	36	1	0	0	0	0	1	0	0	0	14705	1377	48	3	302	3	SLC35F4	14	58033246	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	15677059	58033246	49316294	385	46524											
GALNTL1	57452	broad.mit.edu	37	chr14	69798189	69798189	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctctcctaggaccacacCcgcgtggtgagtcccatcat	8	16	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69798189	A	A	69798189	2	1	36	1	0	0	0	0	0	0	0	1	6283	610	22	2		2	GALNTL1	14	69798189	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	11764943	69798189	37551351	386	46525											
SLC8A3	6547	broad.mit.edu	37	chr14	70530312	70530312	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttgagcatccctcgtatgGatgccatgtgtcaggctggc	12	11	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70530312	T	T	70530312	1	4	36	0	1	0	0	0	0	0	0	0	14822	1189	41	3		3	SLC8A3	14	70530312	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	732123	70530312	36819228	387	46526											
RGS6	9628	broad.mit.edu	37	chr14	72435650	72435650	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgcacccattaactcTcatttacattaggcatgtct	6	11	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72435650	G	G	72435650	1	3	36	0	1	0	0	0	0	0	0	0	13418	1566	54	5		5	RGS6	14	72435650	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1905338	72435650	34913890	388	46527											
ESRRB	2103	broad.mit.edu	37	chr14	76966353	76966353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcccttctagtccaaccCccctcaatgagagaggcagg	9	16	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76966353	A	A	76966353	3	1	36	1	0	0	0	0	1	0	0	0	5303	623	22	2	1470	2	ESRRB	14	76966353	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4530703	76966353	30383187	389	46528											
ANGEL1	23357	broad.mit.edu	37	chr14	77272897	77272897	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtctggccaccttgtcCacttccgccaggagaatggc	11	14	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77272897	A	A	77272897	2	1	36	1	0	0	0	0	0	0	0	1	608	581	21	2		2	ANGEL1	14	77272897	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	306544	77272897	30076643	390	46529											
AHNAK2	113146	broad.mit.edu	37	chr14	105418309	105418309	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcattttgaacctgctgTctttggcagtcacatccttg	10	10	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105418309	A	A	105418309	3	1	36	1	0	0	0	0	1	0	0	0	415	1667	58	5	13912	5	AHNAK2	14	105418309	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	28145412	105418309	1931231	391	46530											
GABRB3	2562	broad.mit.edu	37	chr15	26866529	26866530	+	Frame_Shift_Ins	INS	-	A	A													ttttcactgtcactccatgcINSacaaatgactttttgtcatt							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26866530	A	A	26866529	7	5	36	1	0	1	1	0	0	0	0	0	6228	697	25	0	1052	0	GABRB3	15	26866529	Frame_Shift_Ins	INS	-	TCGA-17-Z001-01A-01W-0746-08		26866529	75664863	392	46531											
GABRB3	2562	broad.mit.edu	37	chr15	27184303	27184303	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttcccatctccccaaggTgaggcaaatccaggtagcaa	8	14	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27184303	A	A	27184303	1	1	36	0	1	0	0	0	0	0	0	0	6228	1711	59	5		5	GABRB3	15	27184303	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	317774	27184303	75347089	393	46532											
AQR	9716	broad.mit.edu	37	chr15	35212663	35212663	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagagaacaatattttattCatagtaacttacttcacttc	3	7	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35212663	A	A	35212663	1	1	36	0	1	0	0	0	0	0	0	0	837	841	29	3		3	AQR	15	35212663	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	8028360	35212663	67318729	394	46533											
SPTBN5	51332	broad.mit.edu	37	chr15	42147101	42147101	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtgcctgccaacttcCtcagggcatacaccttggcc	10	16	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42147101	A	A	42147101	3	1	36	1	0	0	0	0	1	0	0	0	15240	681	24	2	1579	2	SPTBN5	15	42147101	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6934438	42147101	60384291	395	46534											
DUOX2	50506	broad.mit.edu	37	chr15	45388110	45388110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggccccactgcccggatGtgcaggctgagtgtgtcctc	14	14	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45388110	T	T	45388110	3	4	36	1	0	0	0	0	1	0	0	0	4841	1368	48	3	670	3	DUOX2	15	45388110	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3241009	45388110	57143282	396	46535											
SLC24A5	283652	broad.mit.edu	37	chr15	48426633	48426633	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtactatcttgcacataggTgtatttatcacaaagggaga	10	6	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48426633	C	C	48426633	2	2	36	1	0	0	0	0	0	0	0	1	14583	1710	59	5		5	SLC24A5	15	48426633	Silent	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3038523	48426633	54104759	397	46536											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51361806	51361806	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatcagcactgagcaatctGtaactcaattaatgataatg	6	9	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51361806	C	C	51361806	1	2	36	0	1	0	0	0	0	0	0	0	16402	1392	48	4		4	TNFAIP8L3	15	51361806	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2935173	51361806	51169586	398	46537											
CORO2B	10391	broad.mit.edu	37	chr15	68900954	68900954	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggagaatgatgagagacCtgtgggtcagggaacatact	15	5	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68900954	A	A	68900954	1	1	36	0	1	0	0	0	0	0	0	0	3789	696	24	2		2	CORO2B	15	68900954	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	17539148	68900954	33630438	399	46538											
NTRK3	4916	broad.mit.edu	37	chr15	88735140	88735140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctagatgcctggggagCcagacctgagagccccaggc	15	12	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88735140	A	A	88735140	1	1	36	0	1	0	0	0	0	0	0	0	10803	754	26	3		3	NTRK3	15	88735140	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	19834186	88735140	13796252	400	46539											
ADAMTS17	170691	broad.mit.edu	37	chr15	100591701	100591701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagatgtctcacactctgcGtgctggccacagatgccttt	10	13	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100591701	T	T	100591701	1	4	36	0	1	0	0	0	0	0	0	0	262	1160	40	3		3	ADAMTS17	15	100591701	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	11856561	100591701	1939691	401	46540											
CRAMP1L	57585	broad.mit.edu	37	chr16	1715213	1715213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggctttggagacaatgGgtgcttatttccatggccta	11	9	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1715213	T	T	1715213	1	4	36	0	1	0	0	0	0	0	0	0	3878	1247	43	2		2	CRAMP1L	16	1715213	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08		1715213	88639540	402	46541											
ZNF500	26048	broad.mit.edu	37	chr16	4812491	4812491	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatccaggcaggcctctGccctggccacagtccacacc	9	19	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4812491	C	C	4812491	1	2	36	0	1	0	0	0	0	0	0	0	18075	1334	46	4		4	ZNF500	16	4812491	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3097278	4812491	85542262	403	46542											
A2BP1	54715	broad.mit.edu	37	chr16	6403861	6403861	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgggctctggtgttcttCctgcttttcctgccttcagt	9	13	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6403861	T	T	6403861	1	4	36	0	1	0	0	0	0	0	0	0	3	870	30	4		4	A2BP1	16	6403861	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1591370	6403861	83950892	404	46543											
A2BP1	54715	broad.mit.edu	37	chr16	7383160	7383160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taataattggaatttttatgGttgagaaagcaaacactttt	7	3	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7383160	T	T	7383160	1	4	36	0	1	0	0	0	0	0	0	0	3	1276	44	3		3	A2BP1	16	7383160	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	979299	7383160	82971593	405	46544											
A2BP1	54715	broad.mit.edu	37	chr16	7568517	7568517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcagtccctaagcccacCctcatcataccagcttcctg	5	17	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7568517	A	A	7568517	1	1	36	0	1	0	0	0	0	0	0	0	3	638	22	2		2	A2BP1	16	7568517	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	185357	7568517	82786236	406	46545											
XYLT1	64131	broad.mit.edu	37	chr16	17294464	17294464	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaccgggttggctggcaTgtactccacggagtcctcgt	13	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17294464	A	A	17294464	3	1	36	1	0	0	0	0	1	0	0	0	17590	1464	51	5	1954	5	XYLT1	16	17294464	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	9725947	17294464	73060289	407	46546											
GP2	2813	broad.mit.edu	37	chr16	20329668	20329668	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcaactgcatccccttcGtaaggattcgtgtagttctg	9	10	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20329668	A	A	20329668	2	1	36	1	0	0	0	0	0	0	0	1	6647	1140	40	4		4	GP2	16	20329668	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3035204	20329668	70025085	408	46547											
OTOA	146183	broad.mit.edu	37	chr16	21702821	21702821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaacacaagacagctttgGgtcacatttgctgttgtgac	9	8	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21702821	T	T	21702821	1	4	36	0	1	0	0	0	0	0	0	0	11396	1247	43	2		2	OTOA	16	21702821	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1373153	21702821	68651932	409	46548											
TMEM219	124446	broad.mit.edu	37	chr16	29982935	29982935	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcctgcgggagcagggAatggggtgggggtgggggtt	23	6	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29982935	G	G	29982935	1	3	36	0	1	0	0	0	0	0	0	0	16265	261	9	5		5	TMEM219	16	29982935	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	8280114	29982935	60371818	410	46549											
ABCC12	94160	broad.mit.edu	37	chr16	48174704	48174704	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcggtagttgatggccCaggcaagggcccaaaagaag	15	10	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48174704	T	T	48174704	4	4	36	1	0	0	0	0	0	1	0	0	52	595	21	4	3632	4	ABCC12	16	48174704	Nonsense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	18191769	48174704	42180049	411	46550											
ABCC11	85320	broad.mit.edu	37	chr16	48204061	48204061	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaatgcagagcagctgcctCtcccccacagagaagtttcc	9	15	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48204061	T	T	48204061	2	4	36	1	0	0	0	0	0	0	0	1	51	912	32	4		4	ABCC11	16	48204061	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	29357	48204061	42150692	412	46551											
NOD2	64127	broad.mit.edu	37	chr16	50745449	50745449	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccagtcttcttcggggcCgcctccccaccctcctgcac	8	21	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50745449	T	T	50745449	3	4	36	1	0	0	0	0	1	0	0	0	10612	652	23	4	1641	4	NOD2	16	50745449	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2541388	50745449	39609304	413	46552											
CHD9	80205	broad.mit.edu	37	chr16	53265541	53265541	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttttcaaaatggtaaatGaaaaaatttttttacagcct	4	5	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53265541	T	T	53265541	1	4	36	0	1	0	0	0	0	0	0	0	3363	1305	45	3		3	CHD9	16	53265541	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2520092	53265541	37089212	414	46553											
PDPR	55066	broad.mit.edu	37	chr16	70180142	70180142	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttgcaaggtaagtgctgAtaaagttctgtttcttaaat	8	5	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70180142	T	T	70180142	1	4	36	0	1	0	0	0	0	0	0	0	11783	348	12	5		5	PDPR	16	70180142	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	16914601	70180142	20174611	415	46554											
WWOX	51741	broad.mit.edu	37	chr16	78229209	78229209	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctccacctggcagttctAccctaagaccatgaacttct	6	15	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78229209	G	G	78229209	1	3	36	0	1	0	0	0	0	0	0	0	17541	406	14	5		5	WWOX	16	78229209	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	8049067	78229209	12125544	416	46555											
SDR42E1	93517	broad.mit.edu	37	chr16	82033761	82033761	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttgattccttctggaatgGtttgagcagggctgctgatg	13	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82033761	C	C	82033761	3	2	36	1	0	0	0	0	1	0	0	0	14086	1261	44	4	1048	4	SDR42E1	16	82033761	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3804552	82033761	8320992	417	46556											
ZNF276	92822	broad.mit.edu	37	chr16	89804205	89804214	+	Splice_Site	DEL	CCCTCTCAGA	-	-													cctggactcactggactctcCcctctcagaggtgcggaact							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89804214	-	-	89804205	8	5	36	1	0	1	0	1	0	0	1	0	17937	638	22	0		0	ZNF276	16	89804205	Splice_Site	DEL	CCCTCTCAGA	TCGA-17-Z001-01A-01W-0746-08	7770444	89804205	550548	418	46557											
TP53	7157	broad.mit.edu	37	chr17	7578550	7578550	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acatcttgttgagggcagggGagtactgtaggaagaggaag	17	4	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578550	A	A	7578550	3	1	36	1	0	0	0	0	1	0	0	0	16505	1174	41	4	918	4	TP53	17	7578550	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08		7578550	73616660	419	46558											
PIK3R6	146850	broad.mit.edu	37	chr17	8730560	8730560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccacgggtctacgcggcCcaggaacgtagccagctctc	12	15	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8730560	A	A	8730560	3	1	36	1	0	0	0	0	1	0	0	0	12018	623	22	2	851	2	PIK3R6	17	8730560	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1152010	8730560	72464650	420	46559											
MYH8	4626	broad.mit.edu	37	chr17	10303998	10304000	+	In_Frame_Del	DEL	CTC	-	-													tcttccagcctctcgctgatCtcctccagttcccgggagag							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10304000	-	-	10303998	7	5	36	1	0	1	0	1	0	0	0	0	10135	912	32	0	2425	0	MYH8	17	10303998	In_Frame_Del	DEL	CTC	TCGA-17-Z001-01A-01W-0746-08	1573438	10303998	70891212	421	46560											
MYH2	4620	broad.mit.edu	37	chr17	10430315	10430315	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgagtaaaggcttgtttGcctcttgataactgagacac	10	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10430315	T	T	10430315	2	4	36	1	0	0	0	0	0	0	0	1	10129	1306	46	3		3	MYH2	17	10430315	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	126317	10430315	70764895	422	46561											
MYO1D	4642	broad.mit.edu	37	chr17	31107692	31107692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtctctcatacagctcaCggcctttatactgctcaatt	7	13	4	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31107692	A	A	31107692	3	1	36	1	0	0	0	0	1	0	0	0	10165	536	19	3	2898	3	MYO1D	17	31107692	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	20677377	31107692	50087518	423	46562											
ACCN1	40	broad.mit.edu	37	chr17	31672930	31672930	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgatggtggcttggagTaaggtgttgacagcagagac	16	4	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31672930	G	G	31672930	1	3	36	0	1	0	0	0	0	0	0	0	128	1653	57	5		5	ACCN1	17	31672930	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	565238	31672930	49522280	424	46563											
UNC45B	146862	broad.mit.edu	37	chr17	33496891	33496891	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgcaggtggcacagaCtacggtctcaggcagtttgc	14	11	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33496891	G	G	33496891	3	3	36	1	0	0	0	0	1	0	0	0	17115	564	20	4	1526	4	UNC45B	17	33496891	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1823961	33496891	47698319	425	46564											
CCL14	6358	broad.mit.edu	37	chr17	34313577	34313578	+	Intron	INS	-	T	T													atttccctgcaggctctaggINSttggaaggaagacaaggcat							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34313578	T	T	34313577	6	5	36	0	1	1	1	0	0	0	0	0	2913	1276	44	0		0	CCL14	17	34313577	Intron	INS	-	TCGA-17-Z001-01A-01W-0746-08	816686	34313577	46881633	426	46565											
GRB7	2886	broad.mit.edu	37	chr17	37899092	37899092	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgagggtctagcaggtgcgGaaagggaatgaatcaccctt	14	8	2	2	rs76121559	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37899092	T	T	37899092	1	4	36	0	1	0	0	0	0	0	0	0	6825	1189	41	3		3	GRB7	17	37899092	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3585515	37899092	43296118	427	46566											
MEOX1	4222	broad.mit.edu	37	chr17	41738663	41738663	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcggggtgctgctcagtgaaGatgtgctcctcctggggcag	17	10	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41738663	T	T	41738663	2	4	36	1	0	0	0	0	0	0	0	1	9566	932	33	3		3	MEOX1	17	41738663	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3839571	41738663	39456547	428	46567											
CRHR1	1394	broad.mit.edu	37	chr17	43777587	43777587	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatccatttcccctttctTccctgctgatccttgctcag	4	17	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43777587	G	G	43777587	1	3	36	0	1	0	0	0	0	0	0	0	3903	1798	62	5		5	CRHR1	17	43777587	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	2038924	43777587	37417623	429	46568											
MYCBPAP	84073	broad.mit.edu	37	chr17	48586035	48586035	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatggtgccgggcggcacCatgaagtctctaaagaagga	13	9	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48586035	T	T	48586035	2	4	36	1	0	0	0	0	0	0	0	1	10113	581	21	4		4	MYCBPAP	17	48586035	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	4808448	48586035	32609175	430	46569											
ABCC3	8714	broad.mit.edu	37	chr17	48741549	48741549	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagaggattattctggaacTgggagcatggcacatgcttg	14	6	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48741549	A	A	48741549	1	1	36	0	1	0	0	0	0	0	0	0	54	1595	55	5		5	ABCC3	17	48741549	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	155514	48741549	32453661	431	46570											
MARCH10	162333	broad.mit.edu	37	chr17	60813722	60813722	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatgaaaccctgagtttcCctctgagtctgagctgtgaa	9	10	2	5			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60813722	T	T	60813722	3	4	36	1	0	0	0	0	1	0	0	0	9391	632	22	4	943	4	MARCH10	17	60813722	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	12072173	60813722	20381488	432	46571											
TAF4B	6875	broad.mit.edu	37	chr18	23807282	23807282	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttgtctgtcggtccagcTggcggcgacgggaaaattcg	15	11	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23807282	G	G	23807282	1	3	36	0	1	0	0	0	0	0	0	0	15646	1595	55	5		5	TAF4B	18	23807282	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08		23807282	54269966	433	46572											
TTR	7276	broad.mit.edu	37	chr18	29178683	29178683	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggacgagggatgggatttCatgtaaccaagagtattcca	12	6	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29178683	A	A	29178683	1	1	36	0	1	0	0	0	0	0	0	0	16864	841	29	3		3	TTR	18	29178683	3'UTR	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5371401	29178683	48898565	434	46573											
ALPK2	115701	broad.mit.edu	37	chr18	56247641	56247641	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcatgtttccaaccccTgtccctgtcatcttccaggt	6	14	3	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247641	A	A	56247641	3	1	36	1	0	0	0	0	1	0	0	0	545	1579	55	5	6185	5	ALPK2	18	56247641	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	27068958	56247641	21829607	435	46574											
SERPINB5	5268	broad.mit.edu	37	chr18	61170670	61170670	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatttaaggtggaaaagatGattgatcccaaggcttgtct	10	5	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61170670	T	T	61170670	3	4	36	1	0	0	0	0	1	0	0	0	14217	1290	45	3	865	3	SERPINB5	18	61170670	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4923029	61170670	16906578	436	46575											
SERPINB4	6318	broad.mit.edu	37	chr18	61305029	61305029	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaataggaaagggtgaTtacaacagaactcttcatta	9	5	2	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61305029	C	C	61305029	3	2	36	1	0	0	0	0	1	0	0	0	14216	1493	52	5	79	5	SERPINB4	18	61305029	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	134359	61305029	16772219	437	46576											
CNDP1	84735	broad.mit.edu	37	chr18	72223507	72223507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccttcttgaggaatttGgaaggtccgaagtccagcaa	11	9	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72223507	T	T	72223507	1	4	36	0	1	0	0	0	0	0	0	0	3625	1363	47	2		2	CNDP1	18	72223507	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	10918478	72223507	5853741	438	46577											
SAFB2	9667	broad.mit.edu	37	chr19	5595254	5595254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggttaagcacgacaccCgccagcccaggcactggctc	10	18	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5595254	A	A	5595254	1	1	36	0	1	0	0	0	0	0	0	0	13918	667	23	1		1	SAFB2	19	5595254	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08		5595254	53533729	439	46578											
INSR	3643	broad.mit.edu	37	chr19	7231317	7231317	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttttttgttttttttttTttttttttttttgagatgga	7	0	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7231317	G	G	7231317	1	3	36	0	1	0	0	0	0	0	0	0	7843	1856	64	5		5	INSR	19	7231317	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1636063	7231317	51897666	440	46579											
MCOLN1	57192	broad.mit.edu	37	chr19	7593514	7593514	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccggctcctgtttgacgtGgtggtcatcctcacctgctc	10	14	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7593514	T	T	7593514	2	4	36	1	0	0	0	0	0	0	0	1	9488	1335	47	2		2	MCOLN1	19	7593514	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	362197	7593514	51535469	441	46580											
KEAP1	9817	broad.mit.edu	37	chr19	10602334	10602334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatgacccccaccccgatgCggttacggggcacgctcatg	12	16	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10602334	T	T	10602334	3	4	36	1	0	0	0	0	1	0	0	0	8211	768	27	4	646	4	KEAP1	19	10602334	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3008820	10602334	48526649	442	46581											
RGL3	57139	broad.mit.edu	37	chr19	11507974	11507974	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacaggcccagggctgggGcacattgtgcttctgcaagg	15	11	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11507974	A	A	11507974	3	1	36	1	0	0	0	0	1	0	0	0	13386	1203	42	4	180	4	RGL3	19	11507974	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	905640	11507974	47621009	443	46582											
ZNF442	79973	broad.mit.edu	37	chr19	12474456	12474456	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atacaatcattcaactggctGaccagccgtgtgtccccaag	8	13	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12474456	A	A	12474456	1	1	36	0	1	0	0	0	0	0	0	0	18042	1305	45	4		4	ZNF442	19	12474456	5'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	966482	12474456	46654527	444	46583											
TECR	9524	broad.mit.edu	37	chr19	14674910	14674911	+	Splice_Site	INS	-	T	T													gtcggcatacagtggtgcagINStaagtggggcaggtgggagg							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14674911	T	T	14674910	8	5	36	1	0	1	1	0	0	0	1	0	15867	1043	36	0	406	0	TECR	19	14674910	Splice_Site	INS	-	TCGA-17-Z001-01A-01W-0746-08	2200454	14674910	44454073	445	46584											
OR7A17	26333	broad.mit.edu	37	chr19	14991763	14991763	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacagagccgagggttcatGatgactgtgtagtgcagagg	15	8	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14991763	T	T	14991763	2	4	36	1	0	0	0	0	0	0	0	1	11309	1280	45	3		3	OR7A17	19	14991763	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	316853	14991763	44137220	446	46585											
CYP4F22	126410	broad.mit.edu	37	chr19	15639381	15639383	+	Intron	DEL	TCT	-	-													aactcatcctttactggtggTcttcttcccctatctcatga					rs142141600		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15639383	-	-	15639381	6	5	36	0	1	1	0	1	0	0	0	0	4222	1682	58	0		0	CYP4F22	19	15639381	Intron	DEL	TCT	TCGA-17-Z001-01A-01W-0746-08	647618	15639381	43489602	447	46586											
TPM4	7171	broad.mit.edu	37	chr19	16197360	16197360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacgaggaggtgagtgggGctggcagatggcgcagcagc	19	7	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16197360	T	T	16197360	1	4	36	0	1	0	0	0	0	0	0	0	16532	1218	42	3		3	TPM4	19	16197360	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	557979	16197360	42931623	448	46587											
JAK3	3718	broad.mit.edu	37	chr19	17937405	17937405	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctattctacaggccacGggagcccccccaaatgcaat	9	15	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17937405	T	T	17937405	1	4	36	0	1	0	0	0	0	0	0	0	8009	1131	39	1		1	JAK3	19	17937405	3'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1740045	17937405	41191578	449	46588											
UPF1	5976	broad.mit.edu	37	chr19	18971211	18971211	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacgtgacccagggccaagAggagattgccagctcgggca	14	12	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18971211	T	T	18971211	3	4	36	1	0	0	0	0	1	0	0	0	17129	304	11	5	2326	5	UPF1	19	18971211	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1033806	18971211	40157772	450	46589											
ZNF382	84911	broad.mit.edu	37	chr19	37117340	37117340	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaagcatgagaaaattcatCctgcagtgaatctccataaa	6	10	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37117340	T	T	37117340	3	4	36	1	0	0	0	0	1	0	0	0	17999	855	30	4	551	4	ZNF382	19	37117340	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	18146129	37117340	22011643	451	46590											
ZNF420	147923	broad.mit.edu	37	chr19	37618016	37618016	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctcaatttttttattctCtcttatctttcagacttgcc	2	10	5	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37618016	G	G	37618016	1	3	36	0	1	0	0	0	0	0	0	0	18024	928	32	4		4	ZNF420	19	37618016	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	500676	37618016	21510967	452	46591											
RYR1	6261	broad.mit.edu	37	chr19	39002318	39002318	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctgaagaaatagctcCcaggttctgccttaatttga	7	12	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39002318	A	A	39002318	1	1	36	0	1	0	0	0	0	0	0	0	13879	638	22	2		2	RYR1	19	39002318	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1384302	39002318	20126665	453	46592											
SIRT2	22933	broad.mit.edu	37	chr19	39372103	39372103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctctgacagtcttcacaCttgggcgtcacctcagagaa	10	12	5	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39372103	A	A	39372103	3	1	36	1	0	0	0	0	1	0	0	0	14451	564	20	3	537	3	SIRT2	19	39372103	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	369785	39372103	19756880	454	46593											
SUPT5H	6829	broad.mit.edu	37	chr19	39964040	39964040	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggacaggacagacacactcAtttcccccattccaggtagc	9	14	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39964040	T	T	39964040	1	4	36	0	1	0	0	0	0	0	0	0	15517	232	8	5		5	SUPT5H	19	39964040	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	591937	39964040	19164943	455	46594											
PSG1	5669	broad.mit.edu	37	chr19	43376074	43376074	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagtcatagggaggctcTgaccattcatccaccacagg	11	11	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43376074	A	A	43376074	3	1	36	1	0	0	0	0	1	0	0	0	12759	1580	55	5	774	5	PSG1	19	43376074	Missense_Mutation	SNP	T	TCGA-17-Z001-01A-01W-0746-08	3412034	43376074	15752909	456	46595											
ZNF285	26974	broad.mit.edu	37	chr19	44892196	44892196	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatctgccagcaatgaaGcacttcttgcgaaaggtaac	8	11	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44892196	C	C	44892196	3	2	36	1	0	0	0	0	1	0	0	0	17948	971	34	4	1565	4	ZNF285	19	44892196	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1516122	44892196	14236787	457	46596											
TMEM143	55260	broad.mit.edu	37	chr19	48867280	48867280	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggtcaatgcgggctgtcCatttctcaccgccgactccc	9	16	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48867280	T	T	48867280	1	4	36	0	1	0	0	0	0	0	0	0	16180	609	21	4		4	TMEM143	19	48867280	5'Flank	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3975084	48867280	10261703	458	46597											
SIGLEC6	946	broad.mit.edu	37	chr19	52031475	52031475	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctagctccccagactgctcCcaggacaccaccagccctgc	8	20	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52031475	A	A	52031475	4	1	36	1	0	0	0	0	0	1	0	0	14425	632	22	2	328	2	SIGLEC6	19	52031475	Nonsense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3164195	52031475	7097508	459	46598											
FPR2	2358	broad.mit.edu	37	chr19	52272462	52272462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaactttgcatcctgggGtggcacccctgaggagaggc	13	11	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52272462	T	T	52272462	3	4	36	1	0	0	0	0	1	0	0	0	6099	1261	44	3	553	3	FPR2	19	52272462	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	240987	52272462	6856521	460	46599											
LILRB1	10859	broad.mit.edu	37	chr19	55142687	55142687	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggacctgcccaggcttcAgggggcaaatccctcaccgg	14	14	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55142687	T	T	55142687	1	4	36	0	1	0	0	0	0	0	0	0	8862	203	7	5		5	LILRB1	19	55142687	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2870225	55142687	3986296	461	46600											
ZSCAN1	284312	broad.mit.edu	37	chr19	58565207	58565207	+	Frame_Shift_Del	DEL	G	-	-													actccgtcctcactgagcatGgcaagatccacctgctggag							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58565207	-	-	58565207	7	5	36	1	0	1	0	1	0	0	0	0	18355	1348	47	0	1029	0	ZSCAN1	19	58565207	Frame_Shift_Del	DEL	G	TCGA-17-Z001-01A-01W-0746-08	3422520	58565207	563776	462	46601											
TMC2	117532	broad.mit.edu	37	chr20	2575626	2575626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgatcgtaagtatgaccGtctcatccgcaggctttgac	9	11	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2575626	T	T	2575626	1	4	36	0	1	0	0	0	0	0	0	0	16108	1160	40	3		3	TMC2	20	2575626	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08		2575626	60449894	463	46602											
PLCB1	23236	broad.mit.edu	37	chr20	8708087	8708087	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatgaacacagctgaagtCttgtgctatttgttcatttg	9	6	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8708087	A	A	8708087	1	1	36	0	1	0	0	0	0	0	0	0	12122	928	32	3		3	PLCB1	20	8708087	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6132461	8708087	54317433	464	46603											
JAG1	182	broad.mit.edu	37	chr20	10621877	10621877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaattcactgcaaatgtGctccgtagtaagaccctaaa	6	12	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10621877	A	A	10621877	3	1	36	1	0	0	0	0	1	0	0	0	8004	1319	46	4	736	4	JAG1	20	10621877	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1913790	10621877	52403643	465	46604											
RALGAPA2	57186	broad.mit.edu	37	chr20	20663725	20663725	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcccagtaagttggaacctCcatccaccccgctgctctgg	9	16	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20663725	A	A	20663725	1	1	36	0	1	0	0	0	0	0	0	0	13122	870	30	3		3	RALGAPA2	20	20663725	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	10041848	20663725	42361795	466	46605											
CST2	1470	broad.mit.edu	37	chr20	23807310	23807310	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccatggtctcctcggaGgcagagcacagagctggagc	15	12	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23807310	T	T	23807310	1	4	36	0	1	0	0	0	0	0	0	0	4006	1015	35	2		2	CST2	20	23807310	5'UTR	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3143585	23807310	39218210	467	46606											
RBM12	10137	broad.mit.edu	37	chr20	34240404	34240404	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatctggatgcattaatcaCagcaatatgaagatctaccc	6	10	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34240404	A	A	34240404	1	1	36	0	1	0	0	0	0	0	0	0	13221	493	17	3		3	RBM12	20	34240404	3'UTR	SNP	C	TCGA-17-Z001-01A-01W-0746-08	10433094	34240404	28785116	468	46607											
DLGAP4	22839	broad.mit.edu	37	chr20	35069378	35069378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaagctccttccccagccCctcagacatggggaggggta	12	15	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35069378	A	A	35069378	1	1	36	0	1	0	0	0	0	0	0	0	4602	638	22	2		2	DLGAP4	20	35069378	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	828974	35069378	27956142	469	46608											
PPP1R16B	26051	broad.mit.edu	37	chr20	37518152	37518152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacattcttcataggcctgGgggagagcgggtcttacccg	13	11	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37518152	T	T	37518152	1	4	36	0	1	0	0	0	0	0	0	0	12467	1247	43	2		2	PPP1R16B	20	37518152	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2448774	37518152	25507368	470	46609											
PPP1R16B	26051	broad.mit.edu	37	chr20	37531179	37531179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaagacaatgatctatGggcatgtctgcatgcccgct	11	11	2	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37531179	T	T	37531179	1	4	36	0	1	0	0	0	0	0	0	0	12467	1363	47	2		2	PPP1R16B	20	37531179	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	13027	37531179	25494341	471	46610											
CDH22	64405	broad.mit.edu	37	chr20	44815221	44815221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatcctagggtttggagGctcaccttggatgtcaagca	12	9	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44815221	T	T	44815221	1	4	36	0	1	0	0	0	0	0	0	0	3137	1218	42	3		3	CDH22	20	44815221	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7284042	44815221	18210299	472	46611											
SLC13A3	64849	broad.mit.edu	37	chr20	45192027	45192027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacccacatcccggggcCtctgctgggaaatgcccaga	11	17	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45192027	A	A	45192027	1	1	36	0	1	0	0	0	0	0	0	0	14506	696	24	2		2	SLC13A3	20	45192027	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	376806	45192027	17833493	473	46612											
PREX1	57580	broad.mit.edu	37	chr20	47262319	47262319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactgattctgatgttgcCacgggtccgtggcctcacct	10	14	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47262319	A	A	47262319	1	1	36	0	1	0	0	0	0	0	0	0	12582	609	21	2		2	PREX1	20	47262319	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2070292	47262319	15763201	474	46613											
ADNP	23394	broad.mit.edu	37	chr20	49518564	49518564	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccacttacctggtttttcGtaagtgatgggtcccacagt	10	10	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49518564	C	C	49518564	3	2	36	1	0	0	0	0	1	0	0	0	323	1145	40	4	3125	4	ADNP	20	49518564	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2256245	49518564	13506956	475	46614											
TSHZ2	128553	broad.mit.edu	37	chr20	51629111	51629111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaatttagaacattccCttggtttgggaaggttcgct	12	8	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51629111	A	A	51629111	1	1	36	0	1	0	0	0	0	0	0	0	16749	696	24	2		2	TSHZ2	20	51629111	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2110547	51629111	11396409	476	46615											
BAGE2	85319	broad.mit.edu	37	chr21	11039232	11039233	+	3'UTR	DNP	CC	AA	AA													ccttgattcttctttggataCcactgttttaggttcctcta							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11039233	AA	AA	11039232	1	1	36	0	1	0	0	0	0	0	0	0	1297	522	18	3		3	BAGE2	21	11039232	3'UTR	DNP	CC	TCGA-17-Z001-01A-01W-0746-08		11039232	37090663	477	46616											
BAGE2	85319	broad.mit.edu	37	chr21	11045627	11045627	+	Intron	DEL	A	-	-													acaaaagaatccaaaataagAtgtgaaaagataaccattca					rs56675609		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11045627	-	-	11045627	6	5	36	0	1	1	0	1	0	0	0	0	1297	348	12	0		0	BAGE2	21	11045627	Intron	DEL	A	TCGA-17-Z001-01A-01W-0746-08	6395	11045627	37084268	478	46617											
BAGE2	85319	broad.mit.edu	37	chr21	11047751	11047751	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaacagaggtaaccctaccAtaaggattccctcctaaatg	7	11	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11047751	T	T	11047751	1	4	36	0	1	0	0	0	0	0	0	0	1297	232	8	5		5	BAGE2	21	11047751	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2124	11047751	37082144	479	46618											
BAGE2	85319	broad.mit.edu	37	chr21	11068246	11068246	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccagctgacaaaatgctActtaccaggtaaaaaccact	6	12	0	1	rs74432742	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11068246	G	G	11068246	1	3	36	0	1	0	0	0	0	0	0	0	1297	406	14	5		5	BAGE2	21	11068246	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	20495	11068246	37061649	480	46619											
NCAM2	4685	broad.mit.edu	37	chr21	22696597	22696597	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcattaatataaatggagAtgtgaaggatgacatttgaa	9	2	1	4			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22696597	T	T	22696597	1	4	36	0	1	0	0	0	0	0	0	0	10298	348	12	5		5	NCAM2	21	22696597	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	11628351	22696597	25433298	481	46620											
KRTAP13-1	140258	broad.mit.edu	37	chr21	31768824	31768824	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtggcttcccttccctGggctatggcgttggattctg	14	11	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768824	T	T	31768824	2	4	36	1	0	0	0	0	0	0	0	1	8593	1335	47	2		2	KRTAP13-1	21	31768824	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	9072227	31768824	16361071	482	46621											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127741	32127741	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggtttcaagaagatgcttCtgaggtgtggatgtcttcta	13	5	4	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32127741	A	A	32127741	1	1	36	0	1	0	0	0	0	0	0	0	8609	928	32	3		3	KRTAP21-1	21	32127741	5'Flank	SNP	C	TCGA-17-Z001-01A-01W-0746-08	358917	32127741	16002154	483	46622											
SFRS15	57466	broad.mit.edu	37	chr21	33073388	33073388	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaggagttgtctttaactGagctgtgatagcctgaacct	11	7	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33073388	A	A	33073388	4	1	36	1	0	0	0	0	0	1	0	0	14284	1299	45	4	2802	4	SFRS15	21	33073388	Nonsense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	945647	33073388	15056507	484	46623											
RUNX1	861	broad.mit.edu	37	chr21	36171802	36171802	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatatgtaaagtggggtgGgatttaaaaaatgtctttta	10	1	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36171802	A	A	36171802	1	1	36	0	1	0	0	0	0	0	0	0	13857	1247	43	4		4	RUNX1	21	36171802	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3098414	36171802	11958093	485	46624											
DSCAM	1826	broad.mit.edu	37	chr21	41521192	41521192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaccacaaccatccatcaCtccatcactatcccaacacc	0	20	3	0	rs143757121	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41521192	T	T	41521192	1	4	36	0	1	0	0	0	0	0	0	0	4808	580	20	4		4	DSCAM	21	41521192	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	5349390	41521192	6608703	486	46625											
MX1	4599	broad.mit.edu	37	chr21	42817301	42817301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacaactcctctgcagagGgaggcccgggacctcctttt	10	15	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42817301	T	T	42817301	1	4	36	0	1	0	0	0	0	0	0	0	10091	1247	43	2		2	MX1	21	42817301	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1296109	42817301	5312594	487	46626											
POTEH	23784	broad.mit.edu	37	chr22	16287895	16287895	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagccaccatctgcttttaAcagccagggaaggccggtag	11	12	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287895	T	T	16287895	1	4	36	0	1	0	0	0	0	0	0	0	12363	58	2	5		5	POTEH	22	16287895	5'UTR	SNP	A	TCGA-17-Z001-01A-01W-0746-08		16287895	35016671	488	46627											
PRAME	23532	broad.mit.edu	37	chr22	22890729	22890729	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcagattgctcagcccgatGaggtgctgcaggagactctg	14	10	3	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22890729	T	T	22890729	2	4	36	1	0	0	0	0	0	0	0	1	12525	1277	45	3		3	PRAME	22	22890729	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6602834	22890729	28413837	489	46628											
THOC5	8563	broad.mit.edu	37	chr22	29932770	29932770	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacctgatatcccccagTgatacctcaacatgcctgtt	6	14	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29932770	A	A	29932770	1	1	36	0	1	0	0	0	0	0	0	0	15991	1711	59	5		5	THOC5	22	29932770	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	7042041	29932770	21371796	490	46629											
MTMR3	8897	broad.mit.edu	37	chr22	30421595	30421595	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggccaaaactaacatTgttctgtttcttctcatctc	5	12	4	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30421595	G	G	30421595	1	3	36	0	1	0	0	0	0	0	0	0	10039	1827	63	5		5	MTMR3	22	30421595	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	488825	30421595	20882971	491	46630											
MEI1	150365	broad.mit.edu	37	chr22	42128673	42128674	+	Intron	DNP	GT	TC	TC													aagggcctgttgaggccaggGtagcggatatttaagtatcc							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	42128674	TC	TC	42128673	1	4	36	0	1	0	0	0	0	0	0	0	9558	1276	44	3		3	MEI1	22	42128673	Intron	DNP	GT	TCGA-17-Z001-01A-01W-0746-08	11707078	42128673	9175893	492	46631											
EFCAB6	64800	broad.mit.edu	37	chr22	43995742	43995742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgaatgatataagattgTgactgggtaagatggaatgg	14	1	0	6			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43995742	A	A	43995742	1	1	36	0	1	0	0	0	0	0	0	0	4979	1711	59	5		5	EFCAB6	22	43995742	Intron	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1867069	43995742	7308824	493	46632											
PRR5	55615	broad.mit.edu	37	chr22	45132724	45132724	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtgcgctccaagagctAcaacacgcctctgctgaacc	10	14	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45132724	T	T	45132724	3	4	36	1	0	0	0	0	1	0	0	0	12706	391	14	5	794	5	PRR5	22	45132724	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1136982	45132724	6171842	494	46633											
SHANK3	85358	broad.mit.edu	37	chr22	51160942	51160942	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttgtctgttctctggCtctcctgttcctccttgttc	6	15	4	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51160942	T	T	51160942	1	4	36	0	1	0	0	0	0	0	0	0	14379	812	28	4		4	SHANK3	22	51160942	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	6028218	51160942	143624	495	46634											
CRLF2	64109	broad.mit.edu	37	chrX	1315012	1315012	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttggtgtctctgcacaggCatctgaaacaaaatgaaaag	10	8	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1315012	A	A	1315012	1	1	36	0	1	0	0	0	0	0	0	0	3919	710	25	3		3	CRLF2	23	1315012	RNA	SNP	C	TCGA-17-Z001-01A-01W-0746-08		1315012	153955548	496	46635											
CRLF2	64109	broad.mit.edu	37	chrX	1321326	1321326	+	RNA	SNP	G	C	C													acctcatagaggagatccccGtaggacaggtcagaacacgt							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1321326	C	C	1321326	1	2	36	0	1	0	0	0	0	0	0	0	3919	1140	40	4		4	CRLF2	23	1321326	RNA	SNP	G	TCGA-17-Z001-01A-01W-0746-08	6314	1321326	153949234	497	46636	232	2									
CRLF2	64109	broad.mit.edu	37	chrX	1321328	1321328	+	RNA	SNP	A	T	T													ctcatagaggagatccccgtAggacaggtcagaacacgtca							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1321328	T	T	1321328	1	4	36	0	1	0	0	0	0	0	0	0	3919	420	15	5		5	CRLF2	23	1321328	RNA	SNP	A	TCGA-17-Z001-01A-01W-0746-08	2	1321328	153949232	498	46637	232	2									
MXRA5	25878	broad.mit.edu	37	chrX	3238059	3238059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatcttacctgtggaaacCtttgtccaagtaacgaaagg	8	9	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3238059	A	A	3238059	3	1	36	1	0	0	0	0	1	0	0	0	10097	680	24	2	2831	2	MXRA5	23	3238059	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1916731	3238059	152032501	499	46638											
NLGN4X	57502	broad.mit.edu	37	chrX	5821878	5821878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctggacagggcggtgcCgctctgaatgatggccttct	14	12	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5821878	A	A	5821878	3	1	36	1	0	0	0	0	1	0	0	0	10559	652	23	1	1617	1	NLGN4X	23	5821878	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2583819	5821878	149448682	500	46639											
KAL1	3730	broad.mit.edu	37	chrX	8591613	8591613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaagcatagtcagatttgGgtcaagtgttttaagtacca	10	6	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8591613	T	T	8591613	1	4	36	0	1	0	0	0	0	0	0	0	8044	1247	43	2		2	KAL1	23	8591613	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	2769735	8591613	146678947	501	46640											
PHKA2	5256	broad.mit.edu	37	chrX	18915323	18915323	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctggtagaatcccacgggGaccctgttgatggccccatc	11	14	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18915323	T	T	18915323	2	4	36	1	0	0	0	0	0	0	0	1	11939	1161	41	3		3	PHKA2	23	18915323	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	10323710	18915323	136355237	502	46641											
SH3KBP1	30011	broad.mit.edu	37	chrX	19666360	19666360	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccactgaagggatgggtaGgtggaaggaaggaggaggac	21	4	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19666360	A	A	19666360	1	1	36	0	1	0	0	0	0	0	0	0	14368	1015	35	4		4	SH3KBP1	23	19666360	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	751037	19666360	135604200	503	46642											
ZNF645	158506	broad.mit.edu	37	chrX	22291637	22291637	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactgcaagacagggaccatCtaagctatattccaccagaa	8	11	1	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22291637	A	A	22291637	3	1	36	1	0	0	0	0	1	0	0	0	18188	912	32	3	531	3	ZNF645	23	22291637	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	2625277	22291637	132978923	504	46643											
MAGEB18	286514	broad.mit.edu	37	chrX	26157999	26157999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gataccgtccctagtgccttCccatcctgctatgaagaggc	9	14	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26157999	A	A	26157999	3	1	36	1	0	0	0	0	1	0	0	0	9267	854	30	3	899	3	MAGEB18	23	26157999	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	3866362	26157999	129112561	505	46644											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29301284	29301284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagaagactccatttgGttccggccaacattgctaca	8	10	0	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29301284	T	T	29301284	3	4	36	1	0	0	0	0	1	0	0	0	7731	1270	44	3	318	3	IL1RAPL1	23	29301284	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3143285	29301284	125969276	506	46645											
MAGEB4	4115	broad.mit.edu	37	chrX	30260301	30260301	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccgtgagaaacgccagCggacccgtggtcagacccag	14	14	1	2	rs148486223		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30260301	A	A	30260301	2	1	36	1	0	0	0	0	0	0	0	1	9270	759	27	3		3	MAGEB4	23	30260301	Silent	SNP	C	TCGA-17-Z001-01A-01W-0746-08	959017	30260301	125010259	507	46646											
RP2	6102	broad.mit.edu	37	chrX	46713150	46713150	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtgcacattagcctgCcaacaatttcgtgtgcgaga	10	10	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46713150	A	A	46713150	4	1	36	1	0	0	0	0	0	1	0	0	13645	747	26	3	348	3	RP2	23	46713150	Nonsense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	16452849	46713150	108557410	508	46647											
ZNF157	7712	broad.mit.edu	37	chrX	47272470	47272470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaaccctatgagtgtgGtgaatgtgggaaattcttcc	12	6	1	3			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47272470	T	T	47272470	3	4	36	1	0	0	0	0	1	0	0	0	17863	1261	44	3	1012	3	ZNF157	23	47272470	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	559320	47272470	107998090	509	46648											
CACNA1F	778	broad.mit.edu	37	chrX	49088122	49088122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttacccctgggccctgcCcctgccttccaggatgcttc	8	20	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49088122	A	A	49088122	1	1	36	0	1	0	0	0	0	0	0	0	2569	638	22	2		2	CACNA1F	23	49088122	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1815652	49088122	106182438	510	46649											
BMP15	9210	broad.mit.edu	37	chrX	50658984	50658984	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcttggaaagagatggatAtcacacaacttgttcagcaa	9	8	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50658984	G	G	50658984	3	3	36	1	0	0	0	0	1	0	0	0	1464	449	16	5	562	5	BMP15	23	50658984	Missense_Mutation	SNP	A	TCGA-17-Z001-01A-01W-0746-08	1570862	50658984	104611576	511	46650											
ZC3H12B	340554	broad.mit.edu	37	chrX	64722025	64722025	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccccaaaagccatgcagtgGgtgcactcaacacccgttcg	9	16	1	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64722025	C	C	64722025	3	2	36	1	0	0	0	0	1	0	0	0	17688	1232	43	4	1465	4	ZC3H12B	23	64722025	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	14063041	64722025	90548535	512	46651											
DLG3	1741	broad.mit.edu	37	chrX	69668755	69668756	+	Intron	INS	-	A	A													aagggaactgcctgtgtctcINScccctaggtgaatggcagtg							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69668756	A	A	69668755	6	5	36	0	1	1	1	0	0	0	0	0	4596	870	30	0		0	DLG3	23	69668755	Intron	INS	-	TCGA-17-Z001-01A-01W-0746-08	4946730	69668755	85601805	513	46652											
RGAG4	340526	broad.mit.edu	37	chrX	71350439	71350439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcgaactccagggagcgGgataggcttgggaacgcgca	15	9	0	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71350439	T	T	71350439	3	4	36	1	0	0	0	0	1	0	0	0	13383	1232	43	2	761	2	RGAG4	23	71350439	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1681684	71350439	83920121	514	46653											
TBX22	50945	broad.mit.edu	37	chrX	79282220	79282220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatcattctgcaatccatGcataagtacaaaccccgagt	6	12	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79282220	T	T	79282220	3	4	36	1	0	0	0	0	1	0	0	0	15780	1319	46	3	669	3	TBX22	23	79282220	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7931781	79282220	75988340	515	46654											
HDX	139324	broad.mit.edu	37	chrX	83723979	83723979	+	Frame_Shift_Del	DEL	C	-	-													gtgttctacagtaagggtctCtaatagttggcttttgccca							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83723979	-	-	83723979	7	5	36	1	0	1	0	1	0	0	0	0	7093	913	32	0	1352	0	HDX	23	83723979	Frame_Shift_Del	DEL	C	TCGA-17-Z001-01A-01W-0746-08	4441759	83723979	71546581	516	46655											
PCDH11X	27328	broad.mit.edu	37	chrX	91642767	91642767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacatttcacctgccagaaGgctctcaggaaagcagcagt	9	12	3	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91642767	T	T	91642767	3	4	36	1	0	0	0	0	1	0	0	0	11602	1000	35	2	3318	2	PCDH11X	23	91642767	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	7918788	91642767	63627793	517	46656											
DRP2	1821	broad.mit.edu	37	chrX	100503390	100503390	+	Intron	DEL	G	-	-													acttggacccagctcagcttGgggcatggttggaacagggc							TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100503390	-	-	100503390	6	5	36	0	1	1	0	1	0	0	0	0	4804	1363	47	0		0	DRP2	23	100503390	Intron	DEL	G	TCGA-17-Z001-01A-01W-0746-08	8860623	100503390	54767170	518	46657											
PRPS1	5631	broad.mit.edu	37	chrX	106884176	106884176	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgttgcaaatatgctatcTgtagcaggtgcagatcatat	9	7	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106884176	A	A	106884176	2	1	36	1	0	0	0	0	0	0	0	1	12684	1567	55	5		5	PRPS1	23	106884176	Silent	SNP	T	TCGA-17-Z001-01A-01W-0746-08	6380786	106884176	48386384	519	46658											
GUCY2F	2986	broad.mit.edu	37	chrX	108708281	108708281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccattgactgggcctcCtatggaattgagactgttgg	12	10	0	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108708281	A	A	108708281	1	1	36	0	1	0	0	0	0	0	0	0	6963	696	24	2		2	GUCY2F	23	108708281	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1824105	108708281	46562279	520	46659											
CHRDL1	91851	broad.mit.edu	37	chrX	109919383	109919383	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttttagggcactgttgacTtaagcaaaataagcctgcag	10	7	0	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109919383	C	C	109919383	1	2	36	0	1	0	0	0	0	0	0	0	3404	1624	56	5		5	CHRDL1	23	109919383	3'UTR	SNP	T	TCGA-17-Z001-01A-01W-0746-08	1211102	109919383	45351177	521	46660											
PAK3	5063	broad.mit.edu	37	chrX	110342187	110342187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggcgtttccctctgcagGgcctggaatggactcgtctg	13	12	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110342187	T	T	110342187	1	4	36	0	1	0	0	0	0	0	0	0	11496	1247	43	2		2	PAK3	23	110342187	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	422804	110342187	44928373	522	46661											
HTR2C	3358	broad.mit.edu	37	chrX	114010014	114010014	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcataaacctgaatcagcAcaccaggctggttgtcagaa	8	11	3	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114010014	G	G	114010014	1	3	36	0	1	0	0	0	0	0	0	0	7513	174	6	5		5	HTR2C	23	114010014	Intron	SNP	A	TCGA-17-Z001-01A-01W-0746-08	3667827	114010014	41260546	523	46662											
ODZ1	10178	broad.mit.edu	37	chrX	123785893	123785893	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgaagttaagatcaggttccGaggggagtgctgtgtatcat	14	6	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123785893	C	C	123785893	3	2	36	1	0	0	0	0	1	0	0	0	10929	1057	37	4	6848	4	ODZ1	23	123785893	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	9775879	123785893	31484667	524	46663											
SMARCA1	6594	broad.mit.edu	37	chrX	128649931	128649931	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttccgactctcagacagtaGctcttcatcttcttcttgct	5	13	6	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128649931	C	C	128649931	3	2	36	1	0	0	0	0	1	0	0	0	14882	962	34	4	2779	4	SMARCA1	23	128649931	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	4864038	128649931	26620629	525	46664											
XPNPEP2	7512	broad.mit.edu	37	chrX	128901799	128901799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctgcagacacacactGgggcattcctccccagctca	9	17	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128901799	T	T	128901799	1	4	36	0	1	0	0	0	0	0	0	0	17570	1363	47	2		2	XPNPEP2	23	128901799	Intron	SNP	G	TCGA-17-Z001-01A-01W-0746-08	251868	128901799	26368761	526	46665											
AIFM1	9131	broad.mit.edu	37	chrX	129264138	129264138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactctctgatcggataccaGttcctgtggccagcccccaa	8	16	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129264138	T	T	129264138	3	4	36	1	0	0	0	0	1	0	0	0	426	1029	36	3	272	3	AIFM1	23	129264138	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	362339	129264138	26006422	527	46666											
FGF13	2258	broad.mit.edu	37	chrX	138140566	138140566	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttccatctgtctgttctgtCtgttcttcctttcttccttc	4	13	6	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138140566	T	T	138140566	1	4	36	0	1	0	0	0	0	0	0	0	5899	928	32	4		4	FGF13	23	138140566	Intron	SNP	C	TCGA-17-Z001-01A-01W-0746-08	8876428	138140566	17129994	528	46667											
AFF2	2334	broad.mit.edu	37	chrX	147743992	147743992	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaattcgccgtgcaagcGcctgggtctcccctagtggc	12	14	2	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147743992	A	A	147743992	2	1	36	1	0	0	0	0	0	0	0	1	357	1074	38	4		4	AFF2	23	147743992	Silent	SNP	G	TCGA-17-Z001-01A-01W-0746-08	9603426	147743992	7526568	529	46668											
MAGEA11	4110	broad.mit.edu	37	chrX	148797640	148797640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctagaggagttgcctgCtgctgagtcaccaagtcctc	10	13	2	2			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148797640	A	A	148797640	3	1	36	1	0	0	0	0	1	0	0	0	9253	797	28	3	521	3	MAGEA11	23	148797640	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	1053648	148797640	6472920	530	46669											
MAMLD1	10046	broad.mit.edu	37	chrX	149639223	149639223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgtccccaccctatcgcCcagagaagctctctagccca	8	19	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149639223	A	A	149639223	3	1	36	1	0	0	0	0	1	0	0	0	9300	623	22	2	1388	2	MAMLD1	23	149639223	Missense_Mutation	SNP	C	TCGA-17-Z001-01A-01W-0746-08	841583	149639223	5631337	531	46670											
L1CAM	3897	broad.mit.edu	37	chrX	153133300	153133300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggactccaggacacgcGcacctggctctgcgtcagca	12	15	2	0			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153133300	T	T	153133300	3	4	36	1	0	0	0	0	1	0	0	0	8660	1087	38	3	1935	3	L1CAM	23	153133300	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	3494077	153133300	2137260	532	46671											
MTCP1NB	100272147	broad.mit.edu	37	chrX	154292295	154292295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcacggatccttctgcgGcatatccagaaaactaaaac	8	12	1	1			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154292295	T	T	154292295	3	4	36	1	0	0	0	0	1	0	0	0	10010	1203	42	3	210	3	MTCP1NB	23	154292295	Missense_Mutation	SNP	G	TCGA-17-Z001-01A-01W-0746-08	1158995	154292295	978265	533	46672											
RER1	11079	broad.mit.edu	37	chr1	2330789	2330789	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtgaaccggagtgcaaaCgtgaactggctcaggctgat	14	8	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2330789	T	T	2330789	1	4	37	0	1	0	0	0	0	0	0	0	13338	551	19	4		4	RER1	1	2330789	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08		2330789	246919832	1	46673											
NBPF1	55672	broad.mit.edu	37	chr1	16894079	16894082	+	Intron	DEL	ACAG	-	-													acacacacacacacacacacAcagagtgagctcagtgaatt					rs71267862		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16894082	-	-	16894079	6	5	37	0	1	1	0	1	0	0	0	0	10286	174	6	0		0	NBPF1	1	16894079	Intron	DEL	ACAG	TCGA-17-Z003-01A-01W-0746-08	14563290	16894079	232356542	2	46674											
KIF17	57576	broad.mit.edu	37	chr1	21009107	21009107	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcggggggtctcacccatctCtgggcagctgggcatggggg	18	11	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21009107	G	G	21009107	1	3	37	0	1	0	0	0	0	0	0	0	8349	928	32	4		4	KIF17	1	21009107	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4115028	21009107	228241514	3	46675											
CNKSR1	10256	broad.mit.edu	37	chr1	26507069	26507069	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgggacaccaggagctcAtcctgggcggggtggaacag	16	11	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26507069	T	T	26507069	3	4	37	1	0	0	0	0	1	0	0	0	3638	217	8	5	184	5	CNKSR1	1	26507069	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5497962	26507069	222743552	4	46676											
PUM1	9698	broad.mit.edu	37	chr1	31501754	31501754	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaatcttcaagtcagcatCttgaattttacatacacatt	3	8	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31501754	T	T	31501754	1	4	37	0	1	0	0	0	0	0	0	0	12933	928	32	4		4	PUM1	1	31501754	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4994685	31501754	217748867	5	46677											
ADC	113451	broad.mit.edu	37	chr1	33567486	33567487	+	Intron	DNP	CC	AA	AA													agagtccattcatttcattgCcgtgtagcgctcttttggtg							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	33567487	AA	AA	33567486	1	1	37	0	1	0	0	0	0	0	0	0	287	754	26	3		3	ADC	1	33567486	Intron	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	2065732	33567486	215683135	6	46678											
CSMD2	114784	broad.mit.edu	37	chr1	34166388	34166388	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactggtaacaactatcagAggcacagtgagttatcagat	10	8	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34166388	G	G	34166388	1	3	37	0	1	0	0	0	0	0	0	0	3979	319	11	5		5	CSMD2	1	34166388	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	598902	34166388	215084233	7	46679											
RLF	6018	broad.mit.edu	37	chr1	40703619	40703619	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataacacatggatctttctCagggtcattgcaggggtacc	10	9	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40703619	T	T	40703619	3	4	37	1	0	0	0	0	1	0	0	0	13500	838	29	4	3275	4	RLF	1	40703619	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6537231	40703619	208547002	8	46680											
TMCO2	127391	broad.mit.edu	37	chr1	40713903	40713903	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtattcagtcaattcagGttatactcttttgttacaaa	6	6	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40713903	T	T	40713903	5	4	37	1	0	0	0	0	0	0	1	0	16119	1275	44	3	240	3	TMCO2	1	40713903	Splice_Site	SNP	G	TCGA-17-Z003-01A-01W-0746-08	10284	40713903	208536718	9	46681											
POMGNT1	55624	broad.mit.edu	37	chr1	46657877	46657877	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcaggcatccgcatccAcatgtcccaatcccagagct	7	15	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46657877	G	G	46657877	3	3	37	1	0	0	0	0	1	0	0	0	12338	159	6	5	574	5	POMGNT1	1	46657877	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5943974	46657877	202592744	10	46682											
AGBL4	84871	broad.mit.edu	37	chr1	49332850	49332850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagcaaaggcagaagggcCacgcctactcaccagggctg	12	12	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49332850	A	A	49332850	1	1	37	0	1	0	0	0	0	0	0	0	377	609	21	2		2	AGBL4	1	49332850	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2674973	49332850	199917771	11	46683											
ORC1L	4998	broad.mit.edu	37	chr1	52847601	52847601	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaatgaccagtggtgtccTgtagggcagtagtttttgaa	13	6	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52847601	C	C	52847601	1	2	37	0	1	0	0	0	0	0	0	0	11355	1595	55	5		5	ORC1L	1	52847601	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3514751	52847601	196403020	12	46684											
DMRTB1	63948	broad.mit.edu	37	chr1	53927166	53927166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccctctgaacatcaacCcggaccgtgcactgggccct	10	17	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53927166	A	A	53927166	3	1	37	1	0	0	0	0	1	0	0	0	4630	623	22	2	604	2	DMRTB1	1	53927166	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1079565	53927166	195323455	13	46685											
C1orf168	199920	broad.mit.edu	37	chr1	57252703	57252703	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctttacaacaaaagttaCactttgttgcttataagttc	4	7	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57252703	G	G	57252703	1	3	37	0	1	0	0	0	0	0	0	0	2032	493	17	4		4	C1orf168	1	57252703	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3325537	57252703	191997918	14	46686											
C8A	731	broad.mit.edu	37	chr1	57351650	57351650	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcagactgcacattttaaGatgaggaaggatgacattat	11	5	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57351650	A	A	57351650	2	1	37	1	0	0	0	0	0	0	0	1	2441	933	33	4		4	C8A	1	57351650	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	98947	57351650	191898971	15	46687											
C8B	732	broad.mit.edu	37	chr1	57406510	57406510	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaggatgggtagagcAgcgttgtgtaccttaacttt	14	5	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57406510	G	G	57406510	1	3	37	0	1	0	0	0	0	0	0	0	2442	203	7	5		5	C8B	1	57406510	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	54860	57406510	191844111	16	46688											
C8B	732	broad.mit.edu	37	chr1	57420542	57420542	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccacagccacatggttggCaagaaaggaactaacatagt	9	10	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57420542	G	G	57420542	1	3	37	0	1	0	0	0	0	0	0	0	2442	725	25	4		4	C8B	1	57420542	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	14032	57420542	191830079	17	46689											
HOOK1	51361	broad.mit.edu	37	chr1	60324150	60324150	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaatgaagagcttcgAtgttcacaagtacaacagga	9	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60324150	G	G	60324150	2	3	37	1	0	0	0	0	0	0	0	1	7349	320	12	5		5	HOOK1	1	60324150	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2903608	60324150	188926471	18	46690											
ROR1	4919	broad.mit.edu	37	chr1	64381937	64381937	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgttgaaggcaagaggatAcaaagagcattcatcgggcc	12	7	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64381937	G	G	64381937	1	3	37	0	1	0	0	0	0	0	0	0	13637	406	14	5		5	ROR1	1	64381937	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	4057787	64381937	184868684	19	46691											
RAVER2	55225	broad.mit.edu	37	chr1	65243492	65243492	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcgtgcttatggaaataTtgagagatgttttctggtct	11	4	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65243492	C	C	65243492	3	2	37	1	0	0	0	0	1	0	0	0	13203	1493	52	5	513	5	RAVER2	1	65243492	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	861555	65243492	184007129	20	46692											
HHLA3	11147	broad.mit.edu	37	chr1	70820791	70820791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcatctacttcgtgccGtatgtacgaagctagcaaat	9	10	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70820791	T	T	70820791	3	4	37	1	0	0	0	0	1	0	0	0	7163	1159	40	3	159	3	HHLA3	1	70820791	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5577299	70820791	178429830	21	46693											
C1orf173	127254	broad.mit.edu	37	chr1	75038451	75038451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacctcttttctctctttGgctggttcctctcccccaag	5	15	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75038451	T	T	75038451	2	4	37	1	0	0	0	0	0	0	0	1	2034	1335	47	2		2	C1orf173	1	75038451	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4217660	75038451	174212170	22	46694											
C1orf173	127254	broad.mit.edu	37	chr1	75055724	75055724	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcactgtcactagaataAgggtgacttctggatgaggt	11	8	3	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75055724	T	T	75055724	2	4	37	1	0	0	0	0	0	0	0	1	2034	59	3	5		5	C1orf173	1	75055724	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	17273	75055724	174194897	23	46695											
C1orf173	127254	broad.mit.edu	37	chr1	75065524	75065524	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatcatccaaaggtgactgCggtattccattcatttgaac	7	9	2	2	rs74093443	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75065524	G	G	75065524	2	3	37	1	0	0	0	0	0	0	0	1	2034	755	27	4		4	C1orf173	1	75065524	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9800	75065524	174185097	24	46696											
FUBP1	8880	broad.mit.edu	37	chr1	78414388	78414388	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaagtcgtctgcatccaTatatttaacaaaggtttttt	5	8	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78414388	C	C	78414388	1	2	37	0	1	0	0	0	0	0	0	0	6152	1421	49	5		5	FUBP1	1	78414388	3'UTR	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3348864	78414388	170836233	25	46697											
COL24A1	255631	broad.mit.edu	37	chr1	86622110	86622110	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccgtgcagcaaagcgcTaacggaaaacagaagccaac	10	11	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86622110	A	A	86622110	1	1	37	0	1	0	0	0	0	0	0	0	3715	1537	53	5		5	COL24A1	1	86622110	5'UTR	SNP	T	TCGA-17-Z003-01A-01W-0746-08	8207722	86622110	162628511	26	46698											
CLCA2	9635	broad.mit.edu	37	chr1	86913416	86913416	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcactgccacagttgagccaGagactggagatcctgttacg	11	11	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86913416	T	T	86913416	4	4	37	1	0	0	0	0	0	1	0	0	3489	943	33	3	1981	3	CLCA2	1	86913416	Nonsense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	291306	86913416	162337205	27	46699											
ABCA4	24	broad.mit.edu	37	chr1	94479896	94479896	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacgggggaaggagggaggAgggaggagaagaaggaaaga	24	1	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94479896	G	G	94479896	1	3	37	0	1	0	0	0	0	0	0	0	34	319	11	5		5	ABCA4	1	94479896	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	7566480	94479896	154770725	28	46700											
COL11A1	1301	broad.mit.edu	37	chr1	103487271	103487272	+	Missense_Mutation	DNP	CC	AT	AT													actactacttacaggctcaaCcactgctggttctcctttct							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	103487272	AT	AT	103487271	3	1	37	1	0	0	0	0	1	0	0	0	3699	507	18	3	4356	3	COL11A1	1	103487271	Missense_Mutation	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	9007375	103487271	145763350	29	46701											
AKNAD1	254268	broad.mit.edu	37	chr1	109385769	109385769	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgacctttctggatcaaAgtcaccaacgattgttgatt	7	9	4	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109385769	G	G	109385769	3	3	37	1	0	0	0	0	1	0	0	0	464	72	3	5	1188	5	AKNAD1	1	109385769	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5898498	109385769	139864852	30	46702											
SYPL2	284612	broad.mit.edu	37	chr1	110018304	110018304	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaggacgtgagctccatcatCgttgcatttggctatccctt	9	11	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110018304	G	G	110018304	3	3	37	1	0	0	0	0	1	0	0	0	15582	874	31	4	241	4	SYPL2	1	110018304	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	632535	110018304	139232317	31	46703											
REG4	83998	broad.mit.edu	37	chr1	120336709	120336709	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaactggaacacagcaacctCttatgtacacaatggtttat	7	9	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120336709	T	T	120336709	1	4	37	0	1	0	0	0	0	0	0	0	13322	928	32	4		4	REG4	1	120336709	3'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	10318405	120336709	128913912	32	46704											
NBPF9	400818	broad.mit.edu	37	chr1	144169709	144169709	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctctctctctctctccctCcctctccctgtctttctctt	1	21	7	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144169709	T	T	144169709	1	4	37	0	1	0	0	0	0	0	0	0	10294	870	30	4		4	NBPF9	1	144169709	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	23833000	144169709	105080912	33	46705											
NBPF10	100132406	broad.mit.edu	37	chr1	145290712	145290712	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagtgggaacacagctgctCactctacagtgtgggttgcc	13	10	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145290712	T	T	145290712	1	4	37	0	1	0	0	0	0	0	0	0	10287	841	29	4		4	NBPF10	1	145290712	5'Flank	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1121003	145290712	103959909	34	46706											
FMO5	2330	broad.mit.edu	37	chr1	146696267	146696267	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccgccaccacgcccggctAatttttttgcatttttagta	6	13	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146696267	G	G	146696267	1	3	37	0	1	0	0	0	0	0	0	0	6016	377	13	5		5	FMO5	1	146696267	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1405555	146696267	102554354	35	46707											
FLG	2312	broad.mit.edu	37	chr1	152276508	152276508	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctctcctgcacttgatctTgcctgttcatgggatgatgc	9	12	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152276508	G	G	152276508	2	3	37	1	0	0	0	0	0	0	0	1	5979	1799	63	5		5	FLG	1	152276508	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5580241	152276508	96974113	36	46708											
S100A2	6273	broad.mit.edu	37	chr1	153533779	153533779	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccagcactccagctgaGccagccgggttatggaacat	10	14	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153533779	T	T	153533779	1	4	37	0	1	0	0	0	0	0	0	0	13889	986	34	3		3	S100A2	1	153533779	3'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1257271	153533779	95716842	37	46709											
BCAN	63827	broad.mit.edu	37	chr1	156622659	156622659	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgacagcgccagccgaggTggagtggccgtggtccccgc	16	14	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156622659	C	C	156622659	2	2	37	1	0	0	0	0	0	0	0	1	1350	1683	59	5		5	BCAN	1	156622659	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3088880	156622659	92627962	38	46710											
HDGF	3068	broad.mit.edu	37	chr1	156714082	156714082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccttcttatcaccgtcaCcctctgcagcttcgggctct	6	18	5	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156714082	A	A	156714082	3	1	37	1	0	0	0	0	1	0	0	0	7085	507	18	3	372	3	HDGF	1	156714082	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	91423	156714082	92536539	39	46711											
PEAR1	375033	broad.mit.edu	37	chr1	156874545	156874545	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccctgtcttgcagcttcaCtaccaccaccaaggagtccc	6	17	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156874545	T	T	156874545	3	4	37	1	0	0	0	0	1	0	0	0	11806	565	20	4	113	4	PEAR1	1	156874545	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	160463	156874545	92376076	40	46712											
FCRL1	115350	broad.mit.edu	37	chr1	157773775	157773775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctccagcctgggcccaagGcccgggtgtctctgaaaaag	13	13	1	1	rs149142723	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157773775	A	A	157773775	3	1	37	1	0	0	0	0	1	0	0	0	5851	1203	42	4	1212	4	FCRL1	1	157773775	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	899230	157773775	91476846	41	46713											
FCRL1	115350	broad.mit.edu	37	chr1	157776929	157776929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgggagagaattcagCagagatcagtacagagcagc	15	7	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157776929	A	A	157776929	1	1	37	0	1	0	0	0	0	0	0	0	5851	725	25	3		3	FCRL1	1	157776929	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3154	157776929	91473692	42	46714											
KIRREL	55243	broad.mit.edu	37	chr1	158061152	158061152	+	Frame_Shift_Del	DEL	G	-	-													tccctctccaccacaggcatGggcctggaaggagaacttct							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158061152	-	-	158061152	7	5	37	1	0	1	0	1	0	0	0	0	8395	1357	47	0	1319	0	KIRREL	1	158061152	Frame_Shift_Del	DEL	G	TCGA-17-Z003-01A-01W-0746-08	284223	158061152	91189469	43	46715											
SPTA1	6708	broad.mit.edu	37	chr1	158585142	158585143	+	Missense_Mutation	DNP	CC	AA	AA													ttccaagttgtcccccaggtCcacaatcttggttagttgac							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	158585143	AA	AA	158585142	3	1	37	1	0	0	0	0	1	0	0	0	15234	855	30	3	627	3	SPTA1	1	158585142	Missense_Mutation	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	523990	158585142	90665479	44	46716											
SPTA1	6708	broad.mit.edu	37	chr1	158596968	158596968	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcatctctgtttaatggtCtttatatagcagttagatca	7	6	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158596968	A	A	158596968	1	1	37	0	1	0	0	0	0	0	0	0	15234	928	32	3		3	SPTA1	1	158596968	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	11826	158596968	90653653	45	46717											
SPTA1	6708	broad.mit.edu	37	chr1	158648262	158648262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccaaaccacgaaggcgCtcccaggcagcattcacctc	9	16	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158648262	A	A	158648262	3	1	37	1	0	0	0	0	1	0	0	0	15234	796	28	3	6706	3	SPTA1	1	158648262	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	51294	158648262	90602359	46	46718											
IFI16	3428	broad.mit.edu	37	chr1	159002342	159002342	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacaaacccgagaaacaAtgaccccaagagcatgaagc	7	11	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159002342	T	T	159002342	3	4	37	1	0	0	0	0	1	0	0	0	7581	101	4	5	1212	5	IFI16	1	159002342	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	354080	159002342	90248279	47	46719											
FCGR2A	2212	broad.mit.edu	37	chr1	161476437	161476437	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggacggatgaaatctGtttacagacagaggtttgca	13	7	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161476437	A	A	161476437	1	1	37	0	1	0	0	0	0	0	0	0	5838	1392	48	4		4	FCGR2A	1	161476437	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2474095	161476437	87774184	48	46720											
LMX1A	4009	broad.mit.edu	37	chr1	165218775	165218775	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtcgctcgcagacacaGcagcagaagcagctcaggtg	13	12	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165218775	T	T	165218775	4	4	37	1	0	0	0	0	0	1	0	0	8935	963	34	3	806	3	LMX1A	1	165218775	Nonsense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3742338	165218775	84031846	49	46721											
UCK2	7371	broad.mit.edu	37	chr1	165860447	165860447	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattaagaaacattttaacaAtttggtatttttcagatgcc	5	5	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165860447	G	G	165860447	1	3	37	0	1	0	0	0	0	0	0	0	17050	116	4	5		5	UCK2	1	165860447	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	641672	165860447	83390174	50	46722											
FMO3	2328	broad.mit.edu	37	chr1	171073164	171073164	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataatgctgaagaagtctAtgtctactactggattctca	7	8	4	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171073164	C	C	171073164	1	2	37	0	1	0	0	0	0	0	0	0	6014	464	16	5		5	FMO3	1	171073164	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5212717	171073164	78177457	51	46723											
TNN	63923	broad.mit.edu	37	chr1	175088090	175088090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttttaggagagtttgctGtaaaaacaaaacaaaacaaa	7	5	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175088090	T	T	175088090	1	4	37	0	1	0	0	0	0	0	0	0	16446	1392	48	3		3	TNN	1	175088090	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4014926	175088090	74162531	52	46724											
TNR	7143	broad.mit.edu	37	chr1	175360456	175360456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgaggtaggggggctgCgggcctgttctttcagagcc	18	10	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175360456	A	A	175360456	3	1	37	1	0	0	0	0	1	0	0	0	16461	768	27	3	2669	3	TNR	1	175360456	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	272366	175360456	73890165	53	46725											
CEP350	9857	broad.mit.edu	37	chr1	179983551	179983551	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctgagccatcagcaactAggcgactacaggaaacttac	8	12	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179983551	G	G	179983551	3	3	37	1	0	0	0	0	1	0	0	0	3284	411	15	5	1997	5	CEP350	1	179983551	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	4623095	179983551	69267070	54	46726											
CACNA1E	777	broad.mit.edu	37	chr1	181701820	181701820	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggggaccgatccagtgcCctggacaaccagaggacccc	14	14	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181701820	T	T	181701820	2	4	37	1	0	0	0	0	0	0	0	1	2568	610	22	4		4	CACNA1E	1	181701820	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1718269	181701820	67548801	55	46727											
RGL1	23179	broad.mit.edu	37	chr1	183885736	183885736	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcggtgacgtccattacctcGactgtgctgcctcctgttta	9	13	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183885736	T	T	183885736	2	4	37	1	0	0	0	0	0	0	0	1	13384	1045	37	3		3	RGL1	1	183885736	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2183916	183885736	65364885	56	46728											
HMCN1	83872	broad.mit.edu	37	chr1	186008791	186008791	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatattgtagacattagatgTagttttcatcatttgagatc	7	4	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186008791	A	A	186008791	1	1	37	0	1	0	0	0	0	0	0	0	7287	1653	57	5		5	HMCN1	1	186008791	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2123055	186008791	63241830	57	46729											
KCNT2	343450	broad.mit.edu	37	chr1	196227513	196227513	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctttttctccgcagcaaggGatggtccgactgatcactgg	12	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196227513	A	A	196227513	3	1	37	1	0	0	0	0	1	0	0	0	8162	1174	41	4	397	4	KCNT2	1	196227513	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	10218722	196227513	53023108	58	46730											
LHX9	56956	broad.mit.edu	37	chr1	197887011	197887011	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcctttccgccccccagccAtgctctttcacgggatctcc	7	19	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197887011	T	T	197887011	3	4	37	1	0	0	0	0	1	0	0	0	8849	217	8	5	92	5	LHX9	1	197887011	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1659498	197887011	51363610	59	46731											
PRELP	5549	broad.mit.edu	37	chr1	203452736	203452736	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaccgaatccgcaagataGaccagagggtgctggagaaa	12	9	0	4	rs56086342		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203452736	A	A	203452736	3	1	37	1	0	0	0	0	1	0	0	0	12579	942	33	4	426	4	PRELP	1	203452736	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5565725	203452736	45797885	60	46732											
LAMB3	3914	broad.mit.edu	37	chr1	209803306	209803306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagggctgacatctgaccCacacctttgctatctacaga	7	15	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209803306	A	A	209803306	1	1	37	0	1	0	0	0	0	0	0	0	8684	609	21	2		2	LAMB3	1	209803306	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6350570	209803306	39447315	61	46733											
RPS6KC1	26750	broad.mit.edu	37	chr1	213375736	213375737	+	Intron	DEL	TT	-	-													gactgaggcaggtggatcacTtttgagatcaggagttcaag					rs66485731		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	213375737	-	-	213375736	6	5	37	0	1	1	0	1	0	0	0	0	13769	1624	56	0		0	RPS6KC1	1	213375736	Intron	DEL	TT	TCGA-17-Z003-01A-01W-0746-08	3572430	213375736	35874885	62	46734											
CENPF	1063	broad.mit.edu	37	chr1	214830826	214830826	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttcacatataaaaagacAaaagtatttgcttttttaca	5	5	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214830826	G	G	214830826	1	3	37	0	1	0	0	0	0	0	0	0	3261	145	5	5		5	CENPF	1	214830826	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1455090	214830826	34419795	63	46735											
USH2A	7399	broad.mit.edu	37	chr1	216373437	216373437	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatttggtatatggtaacaGgtctgtgtctaagaagtatt	10	3	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216373437	A	A	216373437	2	1	37	1	0	0	0	0	0	0	0	1	17162	991	35	4		4	USH2A	1	216373437	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1542611	216373437	32877184	64	46736											
USH2A	7399	broad.mit.edu	37	chr1	216419843	216419843	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaataaaatttgtagaagccAcaaaccagaaacagggagaa	8	6	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216419843	T	T	216419843	1	4	37	0	1	0	0	0	0	0	0	0	17162	174	6	5		5	USH2A	1	216419843	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	46406	216419843	32830778	65	46737											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220335661	220335661	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttatatagtctcactttTattacacataaattactctt	2	8	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220335661	C	C	220335661	1	2	37	0	1	0	0	0	0	0	0	0	13044	1769	61	5		5	RAB3GAP2	1	220335661	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3915818	220335661	28914960	66	46738											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220357365	220357365	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttatataatataaaatgTgggattactcacattatcag	5	4	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220357365	C	C	220357365	1	2	37	0	1	0	0	0	0	0	0	0	13044	1711	59	5		5	RAB3GAP2	1	220357365	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	21704	220357365	28893256	67	46739											
CDC42BPA	8476	broad.mit.edu	37	chr1	227279520	227279520	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaatataaagttataccCacaattcctatcagtgttga	5	8	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227279520	T	T	227279520	1	4	37	0	1	0	0	0	0	0	0	0	3102	609	21	4		4	CDC42BPA	1	227279520	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6922155	227279520	21971101	68	46740											
OBSCN	84033	broad.mit.edu	37	chr1	228444509	228444509	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttcagctcgaaagtgcgCatggaggctgtgggctgcac	15	10	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228444509	T	T	228444509	2	4	37	1	0	0	0	0	0	0	0	1	10907	697	25	4		4	OBSCN	1	228444509	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1164989	228444509	20806112	69	46741											
NUP133	55746	broad.mit.edu	37	chr1	229631292	229631292	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgactccttctttaatagcTtcatagttactttcagatcc	4	10	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229631292	A	A	229631292	3	1	37	1	0	0	0	0	1	0	0	0	10849	1606	56	5	2550	5	NUP133	1	229631292	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1186783	229631292	19619329	70	46742											
URB2	9816	broad.mit.edu	37	chr1	229773769	229773769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactgcagggatggagggGccgacatttcccaaggaagc	15	10	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229773769	T	T	229773769	3	4	37	1	0	0	0	0	1	0	0	0	17151	1203	42	3	3419	3	URB2	1	229773769	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	142477	229773769	19476852	71	46743											
EDARADD	128178	broad.mit.edu	37	chr1	236645924	236645924	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtggcccaagcgggagcGtggagacccctccaggcact	16	13	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236645924	C	C	236645924	3	2	37	1	0	0	0	0	1	0	0	0	4946	1145	40	4	680	4	EDARADD	1	236645924	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6872155	236645924	12604697	72	46744											
ZNF670	93474	broad.mit.edu	37	chr1	247200850	247200850	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtttttctccagtatgagtCctttcatggcttcgaagggc	11	9	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247200850	T	T	247200850	2	4	37	1	0	0	0	0	0	0	0	1	18204	854	30	4		4	ZNF670	1	247200850	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	10554926	247200850	2049771	73	46745											
OR2L13	284521	broad.mit.edu	37	chr1	248262962	248262962	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcatctccttcctgggAtgtggtgtgcaaagcttctt	11	9	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248262962	T	T	248262962	2	4	37	1	0	0	0	0	0	0	0	1	11100	320	12	5		5	OR2L13	1	248262962	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1062112	248262962	987659	74	46746											
OR2T34	127068	broad.mit.edu	37	chr1	248737278	248737278	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggagcatgtaggtgtagaAggaagcaccgaagagcagca	15	8	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248737278	G	G	248737278	3	3	37	1	0	0	0	0	1	0	0	0	11119	72	3	5	179	5	OR2T34	1	248737278	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	474316	248737278	513343	75	46747											
PGBD2	267002	broad.mit.edu	37	chr1	249211295	249211295	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttggcagaaaaatgtcaAtttgagtcttacggctcagg	11	7	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	249211295	G	G	249211295	3	3	37	1	0	0	0	0	1	0	0	0	11876	101	4	5	518	5	PGBD2	1	249211295	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	474017	249211295	39326	76	46748											
TPO	7173	broad.mit.edu	37	chr2	1457533	1457533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctccagtctatgaggacGgcttcagtcagccccgaggc	11	15	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1457533	A	A	1457533	3	1	37	1	0	0	0	0	1	0	0	0	16534	1116	39	4	568	4	TPO	2	1457533	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08		1457533	241741840	77	46749											
GREB1	9687	broad.mit.edu	37	chr2	11756634	11756634	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggggcctggaagatggcaGtgaatgagtaaatggatggg	19	3	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11756634	C	C	11756634	1	2	37	0	1	0	0	0	0	0	0	0	6826	1044	36	4		4	GREB1	2	11756634	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	10299101	11756634	231442739	78	46750											
LPIN1	23175	broad.mit.edu	37	chr2	11922254	11922254	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattacttgttctccttggGtcactcagtttttctggttg	9	8	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11922254	A	A	11922254	1	1	37	0	1	0	0	0	0	0	0	0	9005	1276	44	4		4	LPIN1	2	11922254	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	165620	11922254	231277119	79	46751											
KCNS3	3790	broad.mit.edu	37	chr2	18113551	18113551	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgatgtggaccagtgcagtGaggatgcaccagagaagtgt	15	6	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18113551	A	A	18113551	3	1	37	1	0	0	0	0	1	0	0	0	8160	1291	45	4	1278	4	KCNS3	2	18113551	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6191297	18113551	225085822	80	46752											
TTC27	55622	broad.mit.edu	37	chr2	32961852	32961852	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgggaagatgttgtcaTttgttatgaaagagccgggc	14	4	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32961852	G	G	32961852	3	3	37	1	0	0	0	0	1	0	0	0	16821	1493	52	5	1467	5	TTC27	2	32961852	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	14848301	32961852	210237521	81	46753											
CRIPT	9419	broad.mit.edu	37	chr2	46851446	46851446	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcatagatgtcaacttacaGaataacatgttttaagataa	7	5	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46851446	T	T	46851446	1	4	37	0	1	0	0	0	0	0	0	0	3910	957	33	3		3	CRIPT	2	46851446	3'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	13889594	46851446	196347927	82	46754											
MSH6	2956	broad.mit.edu	37	chr2	48030811	48030811	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatatggggggcaagtctaCgcttatgagacaggtaactg	13	6	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48030811	T	T	48030811	3	4	37	1	0	0	0	0	1	0	0	0	9968	536	19	4	3443	4	MSH6	2	48030811	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1179365	48030811	195168562	83	46755											
LHCGR	3973	broad.mit.edu	37	chr2	48956192	48956192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtagtcttttccttttGgattcctagcagtggatgct	10	8	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48956192	T	T	48956192	1	4	37	0	1	0	0	0	0	0	0	0	8834	1363	47	2		2	LHCGR	2	48956192	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	925381	48956192	194243181	84	46756											
FSHR	2492	broad.mit.edu	37	chr2	49190205	49190205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagaaagaaatgggtgcCatgcagaggaagtcagtgaa	14	5	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49190205	A	A	49190205	3	1	37	1	0	0	0	0	1	0	0	0	6133	594	21	2	336	2	FSHR	2	49190205	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	234013	49190205	194009168	85	46757											
NRXN1	9378	broad.mit.edu	37	chr2	50765733	50765733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaatctcactctcaccagGagcagtgtagggagtacgca	11	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50765733	T	T	50765733	3	4	37	1	0	0	0	0	1	0	0	0	10760	1174	41	3	3041	3	NRXN1	2	50765733	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1575528	50765733	192433640	86	46758											
CCDC88A	55704	broad.mit.edu	37	chr2	55546086	55546086	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaattattgttctgtgtctCaagttgcttcagttgagttt	8	6	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55546086	G	G	55546086	3	3	37	1	0	0	0	0	1	0	0	0	2891	835	29	4	2454	4	CCDC88A	2	55546086	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4780353	55546086	187653287	87	46759											
C2orf86	51057	broad.mit.edu	37	chr2	63743776	63743779	+	Intron	DEL	TGGA	-	-													gccatgtgaatgagccacctTggatggaaatccaccagctc					rs148588785		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63743779	-	-	63743776	6	5	37	0	1	1	0	1	0	0	0	0	2223	1827	63	0		0	C2orf86	2	63743776	Intron	DEL	TGGA	TCGA-17-Z003-01A-01W-0746-08	8197690	63743776	179455597	88	46760											
PELI1	57162	broad.mit.edu	37	chr2	64323337	64323337	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accgatatttctctccatatTccaggcttggagtcttctgt	7	11	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64323337	C	C	64323337	2	2	37	1	0	0	0	0	0	0	0	1	11815	1770	62	5		5	PELI1	2	64323337	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	579561	64323337	178876036	89	46761											
GFPT1	2673	broad.mit.edu	37	chr2	69564982	69564982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagactagtctgcttcaCtgacactatgattaaataat	5	9	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69564982	A	A	69564982	1	1	37	0	1	0	0	0	0	0	0	0	6409	580	20	3		3	GFPT1	2	69564982	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5241645	69564982	173634391	90	46762											
ADD2	119	broad.mit.edu	37	chr2	70900436	70900436	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacggccggaccagagccTggctctcgttcctgtcctgt	11	16	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70900436	C	C	70900436	1	2	37	0	1	0	0	0	0	0	0	0	305	1567	55	5		5	ADD2	2	70900436	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1335454	70900436	172298937	91	46763											
C2orf78	388960	broad.mit.edu	37	chr2	74040815	74040815	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacctttaccaacattctagCacaactatgttgtctggggt	7	10	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74040815	G	G	74040815	3	3	37	1	0	0	0	0	1	0	0	0	2217	709	25	4	315	4	C2orf78	2	74040815	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3140379	74040815	169158558	92	46764											
LRRTM4	80059	broad.mit.edu	37	chr2	77626153	77626153	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtagcagttctcctgtccatCctgccatgactagactggcc	9	14	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77626153	A	A	77626153	1	1	37	0	1	0	0	0	0	0	0	0	9129	870	30	3		3	LRRTM4	2	77626153	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3585338	77626153	165573220	93	46765											
REG3A	5068	broad.mit.edu	37	chr2	79384478	79384478	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcttgtgaatccaatgaaGgggcatcccaggttttagcc	11	9	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384478	A	A	79384478	1	1	37	0	1	0	0	0	0	0	0	0	13320	1015	35	4		4	REG3A	2	79384478	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1758325	79384478	163814895	94	46766											
CTNNA2	1496	broad.mit.edu	37	chr2	80349125	80349125	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggaaattgccacagcctaGcactcagtttcctcggcttg	10	12	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80349125	C	C	80349125	1	2	37	0	1	0	0	0	0	0	0	0	4047	986	34	4		4	CTNNA2	2	80349125	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	964647	80349125	162850248	95	46767											
LRRTM1	347730	broad.mit.edu	37	chr2	80529899	80529899	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtccaggacgtcctcgcccTgtgcgtactccgggctggcg	14	16	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80529899	A	A	80529899	3	1	37	1	0	0	0	0	1	0	0	0	9126	1580	55	5	526	5	LRRTM1	2	80529899	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	180774	80529899	162669474	96	46768											
CTNNA2	1496	broad.mit.edu	37	chr2	80684166	80684166	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgaggtgattgatatgccCattgccctgatttgatcatt	9	7	1	5			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80684166	G	G	80684166	1	3	37	0	1	0	0	0	0	0	0	0	4047	609	21	4		4	CTNNA2	2	80684166	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	154267	80684166	162515207	97	46769											
GGCX	2677	broad.mit.edu	37	chr2	85781383	85781383	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcaagcagcagcccacCccagtgcacgaccagcaggc	12	16	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85781383	T	T	85781383	3	4	37	1	0	0	0	0	1	0	0	0	6420	623	22	4	1540	4	GGCX	2	85781383	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5097217	85781383	157417990	98	46770											
ZNF514	84874	broad.mit.edu	37	chr2	95815962	95815962	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaataattcttctttggAaattccccaacttggcattg	7	9	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95815962	G	G	95815962	3	3	37	1	0	0	0	0	1	0	0	0	18086	246	9	5	938	5	ZNF514	2	95815962	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	10034579	95815962	147383411	99	46771											
ACTR1B	10120	broad.mit.edu	37	chr2	98274305	98274306	+	Intron	INS	-	A	A													aatgttcattgagcaccaccINSaaaaagccaacagaatatgg							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98274306	A	A	98274305	6	5	37	0	1	1	1	0	0	0	0	0	210	609	21	0		0	ACTR1B	2	98274305	Intron	INS	-	TCGA-17-Z003-01A-01W-0746-08	2458343	98274305	144925068	100	46772											
CNGA3	1261	broad.mit.edu	37	chr2	99005961	99005961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcctggcctgccttcccCtacagggactccccatgtga	8	18	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99005961	A	A	99005961	1	1	37	0	1	0	0	0	0	0	0	0	3630	696	24	2		2	CNGA3	2	99005961	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	731656	99005961	144193412	101	46773											
RGPD3	653489	broad.mit.edu	37	chr2	107040987	107040987	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaattttgctgccaatcGctctagtttggcatcaccat	6	10	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107040987	A	A	107040987	4	1	37	1	0	0	0	0	0	1	0	0	13395	1095	38	4	1856	4	RGPD3	2	107040987	Nonsense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	8035026	107040987	136158386	102	46774											
PAX8	7849	broad.mit.edu	37	chr2	114002157	114002157	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggtggccaccttgggcttgGagccccctatcactccaggc	13	15	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114002157	C	C	114002157	3	2	37	1	0	0	0	0	1	0	0	0	11579	1174	41	4	1027	4	PAX8	2	114002157	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6961170	114002157	129197216	103	46775											
DPP10	57628	broad.mit.edu	37	chr2	115318677	115318677	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctccacaccagctccgtcCgctcctttagtttggaatat	6	16	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115318677	T	T	115318677	1	4	37	0	1	0	0	0	0	0	0	0	4767	667	23	4		4	DPP10	2	115318677	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1316520	115318677	127880696	104	46776											
GLI2	2736	broad.mit.edu	37	chr2	121684803	121684803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcgtgggtgtgtgatcGcgcgggcactgcggagcccc	16	14	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121684803	T	T	121684803	1	4	37	0	1	0	0	0	0	0	0	0	6502	1102	38	3		3	GLI2	2	121684803	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6366126	121684803	121514570	105	46777											
NCKAP5	344148	broad.mit.edu	37	chr2	133636225	133636225	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacAcacgcacgcatacacacaca	2	19	0	0	rs60803517		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133636225	G	G	133636225	1	3	37	0	1	0	0	0	0	0	0	0	10318	174	6	5		5	NCKAP5	2	133636225	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	11951422	133636225	109563148	106	46778											
R3HDM1	23518	broad.mit.edu	37	chr2	136481642	136481642	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccagtcccaaccacgtcGtcaccccctctgctgtggca	7	21	2	0	rs143951307		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136481642	A	A	136481642	3	1	37	1	0	0	0	0	1	0	0	0	12995	1145	40	4	3174	4	R3HDM1	2	136481642	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2845417	136481642	106717731	107	46779											
LRP1B	53353	broad.mit.edu	37	chr2	141027875	141027875	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accattgtaacagtagccatCacataactgacagctagagg	8	10	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141027875	A	A	141027875	3	1	37	1	0	0	0	0	1	0	0	0	9042	826	29	3	640	3	LRP1B	2	141027875	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4546233	141027875	102171498	108	46780											
ARHGAP15	55843	broad.mit.edu	37	chr2	144244727	144244727	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaattgtgaatatatggaaCtaatcccattctcattgtac	5	7	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144244727	G	G	144244727	1	3	37	0	1	0	0	0	0	0	0	0	868	580	20	4		4	ARHGAP15	2	144244727	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3216852	144244727	98954646	109	46781											
KIF5C	3800	broad.mit.edu	37	chr2	149806425	149806425	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataagtctttgtctgctcttGgaaatgtgatctctgctttg	9	7	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149806425	A	A	149806425	3	1	37	1	0	0	0	0	1	0	0	0	8377	1349	47	4	743	4	KIF5C	2	149806425	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5561698	149806425	93392948	110	46782											
SLC4A10	57282	broad.mit.edu	37	chr2	162833373	162833373	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaagataaggagtcaagcTttccttccaaaaggtttgga	9	7	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162833373	C	C	162833373	3	2	37	1	0	0	0	0	1	0	0	0	14765	1609	56	5	3514	5	SLC4A10	2	162833373	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	13026948	162833373	80366000	111	46783											
SCN2A	6326	broad.mit.edu	37	chr2	166201109	166201109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggccaactctaaatatGctaattaagatcattggcaa	6	8	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166201109	T	T	166201109	3	4	37	1	0	0	0	0	1	0	0	0	14029	1319	46	3	2761	3	SCN2A	2	166201109	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3367736	166201109	76998264	112	46784											
SCN1A	6323	broad.mit.edu	37	chr2	166897784	166897784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgaaatggtccgtcattGgatagtgctccatggccatg	11	8	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166897784	T	T	166897784	3	4	37	1	0	0	0	0	1	0	0	0	14027	1348	47	2	3713	2	SCN1A	2	166897784	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	696675	166897784	76301589	113	46785											
SCN7A	6332	broad.mit.edu	37	chr2	167262949	167262949	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcaaaattatacattccaAatacggcatagatgaacatg	7	7	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167262949	T	T	167262949	3	4	37	1	0	0	0	0	1	0	0	0	14036	14	1	5	862	5	SCN7A	2	167262949	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	365165	167262949	75936424	114	46786											
LRP2	4036	broad.mit.edu	37	chr2	170042168	170042168	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcggtcaaaatctaatgcCacaacattgtccagtccttc	5	13	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170042168	A	A	170042168	2	1	37	1	0	0	0	0	0	0	0	1	9043	581	21	2		2	LRP2	2	170042168	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2779219	170042168	73157205	115	46787											
TLK1	9874	broad.mit.edu	37	chr2	171906414	171906414	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaagtgcccgaggcgtaatCgatcttgcatactcttctct	8	11	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171906414	A	A	171906414	3	1	37	1	0	0	0	0	1	0	0	0	16066	884	31	3	1458	3	TLK1	2	171906414	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1864246	171906414	71292959	116	46788											
HOXD1	3231	broad.mit.edu	37	chr2	177054663	177054663	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaactcgagcccggcgcatCgagatagccaactgcttgca	10	13	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177054663	G	G	177054663	3	3	37	1	0	0	0	0	1	0	0	0	7385	874	31	4	786	4	HOXD1	2	177054663	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5148249	177054663	66144710	117	46789											
TTN	7273	broad.mit.edu	37	chr2	179439236	179439236	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactaaagctttgctcacagTctgccagagaataccatttc	6	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179439236	C	C	179439236	3	2	37	1	0	0	0	0	1	0	0	0	16861	1667	58	5	36504	5	TTN	2	179439236	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2384573	179439236	63760137	118	46790											
TTN	7273	broad.mit.edu	37	chr2	179465807	179465807	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatagtgggtaacaggggaGcccccatcattcttcggggg	14	9	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179465807	A	A	179465807	2	1	37	1	0	0	0	0	0	0	0	1	16861	958	34	4		4	TTN	2	179465807	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	26571	179465807	63733566	119	46791											
TTN	7273	broad.mit.edu	37	chr2	179530192	179530192	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcatagcttctggtgctttGaagatattagtattatggtt	9	4	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179530192	C	C	179530192	1	2	37	0	1	0	0	0	0	0	0	0	16861	1305	45	4		4	TTN	2	179530192	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	64385	179530192	63669181	120	46792											
TTN	7273	broad.mit.edu	37	chr2	179538410	179538411	+	Missense_Mutation	DNP	GG	TT	TT													gaacaggagtaggtgcttcaGgtactgctttcttaatcact							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179538411	TT	TT	179538410	3	4	37	1	0	0	0	0	1	0	0	0	16861	1000	35	2	69816	2	TTN	2	179538410	Missense_Mutation	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	8218	179538410	63660963	121	46793											
TTN	7273	broad.mit.edu	37	chr2	179600190	179600190	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaacagtttttctactgagGattccttgcagagaagggac	10	9	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179600190	T	T	179600190	1	4	37	0	1	0	0	0	0	0	0	0	16861	1189	41	3		3	TTN	2	179600190	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	61780	179600190	63599183	122	46794											
TTN	7273	broad.mit.edu	37	chr2	179604128	179604128	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaaacagtgtccactaaaGgtgtatgtatcatggggcca	11	8	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179604128	C	C	179604128	3	2	37	1	0	0	0	0	1	0	0	0	16861	1000	35	4	90957	4	TTN	2	179604128	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3938	179604128	63595245	123	46795											
ITGAV	3685	broad.mit.edu	37	chr2	187542043	187542043	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtttttaagttatgctacAtcttgacccactagaattag	6	8	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187542043	G	G	187542043	1	3	37	0	1	0	0	0	0	0	0	0	7958	232	8	5		5	ITGAV	2	187542043	3'UTR	SNP	A	TCGA-17-Z003-01A-01W-0746-08	7937915	187542043	55657330	124	46796											
HECW2	57520	broad.mit.edu	37	chr2	197187402	197187402	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacaaatatgatactataTcattttatttgtataggaaa	5	3	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197187402	A	A	197187402	1	1	37	0	1	0	0	0	0	0	0	0	7110	1450	50	5		5	HECW2	2	197187402	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	9645359	197187402	46011971	125	46797											
SATB2	23314	broad.mit.edu	37	chr2	200137209	200137209	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaaagagtgtggatggcttCctggtctgggtacaggccta	15	8	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200137209	A	A	200137209	4	1	37	1	0	0	0	0	0	1	0	0	13966	864	30	3	278	3	SATB2	2	200137209	Nonsense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2949807	200137209	43062164	126	46798											
SUMO1	7341	broad.mit.edu	37	chr2	203071900	203071900	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagttttcaattccgttttGaacaccacattacaaaagaa	4	10	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203071900	C	C	203071900	1	2	37	0	1	0	0	0	0	0	0	0	15505	1305	45	4		4	SUMO1	2	203071900	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2934691	203071900	40127473	127	46799											
PIKFYVE	200576	broad.mit.edu	37	chr2	209204902	209204902	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttagcaggggggttatttttCcttagttgctcgcttcatat	10	7	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209204902	A	A	209204902	1	1	37	0	1	0	0	0	0	0	0	0	12019	870	30	3		3	PIKFYVE	2	209204902	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6133002	209204902	33994471	128	46800											
FN1	2335	broad.mit.edu	37	chr2	216271930	216271930	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccacagcatagatagtgAtgttatactgaacaccaggt	8	9	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216271930	T	T	216271930	3	4	37	1	0	0	0	0	1	0	0	0	6020	333	12	5	4916	5	FN1	2	216271930	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	7067028	216271930	26927443	129	46801											
DNER	92737	broad.mit.edu	37	chr2	230223358	230223358	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacattgcaggccgggatttCtttccaaacctgaaatcaga	8	10	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230223358	A	A	230223358	3	1	37	1	0	0	0	0	1	0	0	0	4707	912	32	3	105	3	DNER	2	230223358	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	13951428	230223358	12976015	130	46802											
CAB39	51719	broad.mit.edu	37	chr2	231682502	231682502	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactactagatagacacaacTtcacaattatgacaaaatac	3	9	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231682502	G	G	231682502	3	3	37	1	0	0	0	0	1	0	0	0	2551	1609	56	5	753	5	CAB39	2	231682502	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1459144	231682502	11516871	131	46803											
EIF4E2	9470	broad.mit.edu	37	chr2	233421264	233421264	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgttggctgcacagatgtAgttgcctttgaacttgagac	12	7	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233421264	T	T	233421264	1	4	37	0	1	0	0	0	0	0	0	0	5072	435	15	5		5	EIF4E2	2	233421264	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1738762	233421264	9778109	132	46804											
DNAJB3	414061	broad.mit.edu	37	chr2	234652498	234652498	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcgccagcttgcggtacGccttcttgatggcctcggat	13	12	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234652498	A	A	234652498	3	1	37	1	0	0	0	0	1	0	0	0	4661	1087	38	4	376	4	DNAJB3	2	234652498	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1231234	234652498	8546875	133	46805											
PASK	23178	broad.mit.edu	37	chr2	242046118	242046118	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttccccatctccaggctcgCagcggacagaactccacttt	8	16	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242046118	G	G	242046118	3	3	37	1	0	0	0	0	1	0	0	0	11566	710	25	4	140	4	PASK	2	242046118	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	7393620	242046118	1153255	134	46806											
CNTN4	152330	broad.mit.edu	37	chr3	3067780	3067780	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtttgttttgttttaactCtccagatccaacaagggtaa	7	7	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3067780	A	A	3067780	1	1	37	0	1	0	0	0	0	0	0	0	3675	928	32	3		3	CNTN4	3	3067780	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08		3067780	194954650	135	46807											
SUMF1	285362	broad.mit.edu	37	chr3	4065386	4065386	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacacacgcacgcacgcacat	3	20	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4065386	G	G	4065386	1	3	37	0	1	0	0	0	0	0	0	0	15503	493	17	4		4	SUMF1	3	4065386	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	997606	4065386	193957044	136	46808											
KCNH8	131096	broad.mit.edu	37	chr3	19384041	19384041	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattcttgaggtgaaatgatGcatgcatgtgtgtctaatga	11	5	2	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19384041	C	C	19384041	1	2	37	0	1	0	0	0	0	0	0	0	8108	1334	46	4		4	KCNH8	3	19384041	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	15318655	19384041	178638389	137	46809											
NEK10	152110	broad.mit.edu	37	chr3	27297818	27297818	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattgttccaaccacagaggTgagtttactgttttcttgtt	9	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27297818	C	C	27297818	3	2	37	1	0	0	0	0	1	0	0	0	10417	1696	59	5	87	5	NEK10	3	27297818	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	7913777	27297818	170724612	138	46810											
STT3B	201595	broad.mit.edu	37	chr3	31667629	31667629	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacattcgggtaagaaacTagataattccaggtatgtga	10	5	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31667629	A	A	31667629	1	1	37	0	1	0	0	0	0	0	0	0	15452	1537	53	5		5	STT3B	3	31667629	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4369811	31667629	166354801	139	46811											
TRANK1	9881	broad.mit.edu	37	chr3	36898690	36898690	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagacagcttcttcagcatTtctgaagtgcactcgatctc	7	12	4	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36898690	A	A	36898690	3	1	37	1	0	0	0	0	1	0	0	0	16578	1838	64	5	6434	5	TRANK1	3	36898690	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5231061	36898690	161123740	140	46812											
C3orf14	57415	broad.mit.edu	37	chr3	62317136	62317136	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatctatcagtagtgcactAcaagttaaacaatggttatg	7	7	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62317136	G	G	62317136	1	3	37	0	1	0	0	0	0	0	0	0	2230	406	14	5		5	C3orf14	3	62317136	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	25418446	62317136	135705294	141	46813											
ADAMTS9	56999	broad.mit.edu	37	chr3	64532753	64532753	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaagctcccacttcattaGcttatttattcatttcaagt	4	9	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64532753	C	C	64532753	1	2	37	0	1	0	0	0	0	0	0	0	273	986	34	4		4	ADAMTS9	3	64532753	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2215617	64532753	133489677	142	46814											
EPHA3	2042	broad.mit.edu	37	chr3	89390872	89390872	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtagaaaacagaagtgAggctcattaatctttgttga	10	4	2	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89390872	T	T	89390872	1	4	37	0	1	0	0	0	0	0	0	0	5210	319	11	5		5	EPHA3	3	89390872	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	24858119	89390872	108631558	143	46815											
NSUN3	63899	broad.mit.edu	37	chr3	93794789	93794789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatccatattccttcagGgtcttcatcattataaatgt	6	9	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93794789	T	T	93794789	1	4	37	0	1	0	0	0	0	0	0	0	10774	1247	43	2		2	NSUN3	3	93794789	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4403917	93794789	104227641	144	46816											
OR5H1	26341	broad.mit.edu	37	chr3	97852218	97852218	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgttctcttcgcaatctTaaaaaagaaatctgataaag	5	6	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852218	A	A	97852218	4	1	37	1	0	0	0	0	0	1	0	0	11253	1764	61	5	679	5	OR5H1	3	97852218	Nonsense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4057429	97852218	100170212	145	46817											
GPR128	84873	broad.mit.edu	37	chr3	100354500	100354500	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtgtaaagctagggtttTttttctggtttttaaaacag	9	3	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100354500	A	A	100354500	1	1	37	0	1	0	0	0	0	0	0	0	6706	1856	64	5		5	GPR128	3	100354500	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2502282	100354500	97667930	146	46818											
ALCAM	214	broad.mit.edu	37	chr3	105258815	105258815	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttgtgtctgtaactcttAcagatcctacagagcaggtg	9	9	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105258815	T	T	105258815	1	4	37	0	1	0	0	0	0	0	0	0	487	406	14	5		5	ALCAM	3	105258815	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	4904315	105258815	92763615	147	46819											
DRD3	1814	broad.mit.edu	37	chr3	113849973	113849973	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaaacttaccaagcacaAtggccaccatttgggttgcc	7	14	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113849973	G	G	113849973	3	3	37	1	0	0	0	0	1	0	0	0	4798	101	4	5	212	5	DRD3	3	113849973	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	8591158	113849973	84172457	148	46820											
PLA1A	51365	broad.mit.edu	37	chr3	119334786	119334786	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagtgggtgggctcccaaGgtcagagtttgaggtccgct	17	8	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119334786	A	A	119334786	1	1	37	0	1	0	0	0	0	0	0	0	12083	1015	35	4		4	PLA1A	3	119334786	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5484813	119334786	78687644	149	46821											
KALRN	8997	broad.mit.edu	37	chr3	124181325	124181325	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtattttgtctgtattttatAtggcctgccagacttgccag	9	8	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124181325	G	G	124181325	1	3	37	0	1	0	0	0	0	0	0	0	8045	464	16	5		5	KALRN	3	124181325	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	4846539	124181325	73841105	150	46822											
KIAA1257	57501	broad.mit.edu	37	chr3	128711899	128711899	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacctacccatattcacaggGaaggccagtgagatggtgaa	11	10	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128711899	C	C	128711899	3	2	37	1	0	0	0	0	1	0	0	0	8288	1165	41	4	1008	4	KIAA1257	3	128711899	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4530574	128711899	69310531	151	46823											
BFSP2	8419	broad.mit.edu	37	chr3	133119134	133119134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggtgcataggtggcttGggtgcccgtgtgacccgccg	18	10	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133119134	T	T	133119134	3	4	37	1	0	0	0	0	1	0	0	0	1422	1339	47	2	209	2	BFSP2	3	133119134	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4407235	133119134	64903296	152	46824											
STAG1	10274	broad.mit.edu	37	chr3	136068096	136068096	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgttcacagacattctatCatcttcacccccagtgacta	4	14	5	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136068096	G	G	136068096	3	3	37	1	0	0	0	0	1	0	0	0	15360	826	29	4	625	4	STAG1	3	136068096	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2948962	136068096	61954334	153	46825											
CEP70	80321	broad.mit.edu	37	chr3	138219396	138219396	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcaaagtttgaaagtgtGgcatattgctgtcctgtcca	10	8	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138219396	A	A	138219396	3	1	37	1	0	0	0	0	1	0	0	0	3289	1348	47	4	427	4	CEP70	3	138219396	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2151300	138219396	59803034	154	46826											
FAM194A	131831	broad.mit.edu	37	chr3	150386939	150386939	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggaatggtgtaaaccaaaaAtgtctctgagttgaacatta	9	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150386939	G	G	150386939	1	3	37	0	1	0	0	0	0	0	0	0	5573	116	4	5		5	FAM194A	3	150386939	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	12167543	150386939	47635491	155	46827											
KCNMB2	10242	broad.mit.edu	37	chr3	178560796	178560796	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattcttcaccaaagaacCttaagtttgtaacgtgcagt	6	9	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178560796	A	A	178560796	1	1	37	0	1	0	0	0	0	0	0	0	8145	696	24	2		2	KCNMB2	3	178560796	3'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	28173857	178560796	19461634	156	46828											
PIK3CA	5290	broad.mit.edu	37	chr3	178937678	178937678	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccactttctttctgaaaaaaTtttctttagatcggccatgc	5	10	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178937678	A	A	178937678	1	1	37	0	1	0	0	0	0	0	0	0	12008	1508	52	5		5	PIK3CA	3	178937678	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	376882	178937678	19084752	157	46829											
FAM131A	131408	broad.mit.edu	37	chr3	184059582	184059582	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactatccaggagatcgctgCgctggccaggtcctccctgc	11	15	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184059582	T	T	184059582	1	4	37	0	1	0	0	0	0	0	0	0	5485	768	27	4		4	FAM131A	3	184059582	5'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5121904	184059582	13962848	158	46830											
EHHADH	1962	broad.mit.edu	37	chr3	184910322	184910322	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gataagtgaatataagcagcGttcaaggatctcatcctggc	10	8	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184910322	A	A	184910322	3	1	37	1	0	0	0	0	1	0	0	0	5022	1145	40	4	311	4	EHHADH	3	184910322	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	850740	184910322	13112108	159	46831											
MAP3K13	9175	broad.mit.edu	37	chr3	185197888	185197888	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttaaatagtttctacctAtcttgatttcttaggcctcc	5	9	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185197888	T	T	185197888	1	4	37	0	1	0	0	0	0	0	0	0	9339	464	16	5		5	MAP3K13	3	185197888	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	287566	185197888	12824542	160	46832											
ATP13A4	84239	broad.mit.edu	37	chr3	193130416	193130416	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattgagagagagagagagaGacagagagagagattcagcc	15	5	1	8			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193130416	C	C	193130416	1	2	37	0	1	0	0	0	0	0	0	0	1130	957	33	4		4	ATP13A4	3	193130416	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	7932528	193130416	4892014	161	46833											
ATP13A4	84239	broad.mit.edu	37	chr3	193176932	193176932	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggatggtcccatcaagaaGgatcagagagtggcagctgg	15	8	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193176932	A	A	193176932	3	1	37	1	0	0	0	0	1	0	0	0	1130	1000	35	4	2046	4	ATP13A4	3	193176932	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	46516	193176932	4845498	162	46834											
POLN	353497	broad.mit.edu	37	chr4	2230953	2230953	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaccaatgcctcataattTtccattttcacaaaatccta	1	13	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2230953	C	C	2230953	2	2	37	1	0	0	0	0	0	0	0	1	12302	1838	64	5		5	POLN	4	2230953	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08		2230953	188923323	163	46835											
AFAP1	60312	broad.mit.edu	37	chr4	7870433	7870433	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcttctgagcatggtcCttcacatcaaaacctgtaag	7	12	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7870433	T	T	7870433	2	4	37	1	0	0	0	0	0	0	0	1	353	680	24	4		4	AFAP1	4	7870433	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5639480	7870433	183283843	164	46836											
BOD1L	259282	broad.mit.edu	37	chr4	13600498	13600498	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccatcttttggaagacTgtcctaaatgcactctgttg	7	9	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13600498	A	A	13600498	1	1	37	0	1	0	0	0	0	0	0	0	1489	1595	55	5		5	BOD1L	4	13600498	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5730065	13600498	177553778	165	46837											
GBA3	57733	broad.mit.edu	37	chr4	22749300	22749300	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaggtatggtgtctctatCactttttgcggtctggttgg	13	6	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22749300	G	G	22749300	4	3	37	1	0	0	0	0	0	1	0	0	6330	838	29	4	678	4	GBA3	4	22749300	Nonsense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9148802	22749300	168404976	166	46838											
KCTD8	386617	broad.mit.edu	37	chr4	44176735	44176736	+	3'UTR	DNP	GG	TT	TT													aatcacactgaccattgttaGgacatcagtcaggtggtgac							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44176736	TT	TT	44176735	1	4	37	0	1	0	0	0	0	0	0	0	8185	1015	35	2		2	KCTD8	4	44176735	3'UTR	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	21427435	44176735	146977541	167	46839											
GABRG1	2565	broad.mit.edu	37	chr4	46066479	46066479	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttgaaaattccagtggacAggaatgttcatccatgggaa	11	7	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066479	T	T	46066479	3	4	37	1	0	0	0	0	1	0	0	0	6231	188	7	5	813	5	GABRG1	4	46066479	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1889744	46066479	145087797	168	46840											
GABRA4	2557	broad.mit.edu	37	chr4	46973176	46973176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcactgtcataatgcaCggaatataggtctgaatcat	8	7	4	2	rs147092196		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46973176	A	A	46973176	2	1	37	1	0	0	0	0	0	0	0	1	6223	523	19	3		3	GABRA4	4	46973176	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	906697	46973176	144181100	169	46841											
ATP10D	57205	broad.mit.edu	37	chr4	47582536	47582536	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatatttgttattaatgaatCaatgatgcttctttgtactt	5	4	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47582536	T	T	47582536	1	4	37	0	1	0	0	0	0	0	0	0	1122	841	29	4		4	ATP10D	4	47582536	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	609360	47582536	143571740	170	46842											
TXK	7294	broad.mit.edu	37	chr4	48075825	48075825	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatgtggttagaacacacaGaaggaagcacaattacaaga	11	6	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48075825	A	A	48075825	1	1	37	0	1	0	0	0	0	0	0	0	16912	957	33	4		4	TXK	4	48075825	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	493289	48075825	143078451	171	46843											
TEC	7006	broad.mit.edu	37	chr4	48152982	48152982	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatccaagttcagaaaaaAttttttttactctaattact	2	6	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48152982	T	T	48152982	1	4	37	0	1	0	0	0	0	0	0	0	15864	116	4	5		5	TEC	4	48152982	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	77157	48152982	143001294	172	46844											
CWH43	80157	broad.mit.edu	37	chr4	49039979	49039979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatgcagatagtctttggCaacttaggtacctaaggctt	9	7	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49039979	A	A	49039979	1	1	37	0	1	0	0	0	0	0	0	0	4106	725	25	3		3	CWH43	4	49039979	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	886997	49039979	142114297	173	46845											
LRRC66	339977	broad.mit.edu	37	chr4	52883222	52883222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaacaaatgtggaattcTtatgaacatgaaacaactcc	6	7	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52883222	A	A	52883222	1	1	37	0	1	0	0	0	0	0	0	0	9105	1624	56	5		5	LRRC66	4	52883222	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3843243	52883222	138271054	174	46846											
PDGFRA	5156	broad.mit.edu	37	chr4	55127551	55127551	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaagagaatgagcttgaAggcaggcacatttacatcta	10	7	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55127551	C	C	55127551	3	2	37	1	0	0	0	0	1	0	0	0	11755	69	3	5	345	5	PDGFRA	4	55127551	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2244329	55127551	136026725	175	46847											
LPHN3	23284	broad.mit.edu	37	chr4	62800583	62800583	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcgagacagttaacaaccTccttcagccacaagctttga	8	12	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62800583	C	C	62800583	3	2	37	1	0	0	0	0	1	0	0	0	9004	1551	54	5	1976	5	LPHN3	4	62800583	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	7673032	62800583	128353693	176	46848											
EPHA5	2044	broad.mit.edu	37	chr4	66355978	66355978	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgttatactttaagtcctGaccttccggttgagggaaaa	10	7	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66355978	T	T	66355978	1	4	37	0	1	0	0	0	0	0	0	0	5212	1305	45	3		3	EPHA5	4	66355978	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3555395	66355978	124798298	177	46849											
PARM1	25849	broad.mit.edu	37	chr4	75939642	75939642	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgggagaaccacagggggtCacaataacagggctgttaca	13	8	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75939642	T	T	75939642	1	4	37	0	1	0	0	0	0	0	0	0	11546	841	29	4		4	PARM1	4	75939642	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9583664	75939642	115214634	178	46850											
C4orf22	255119	broad.mit.edu	37	chr4	81463318	81463318	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttgcaccagcagcctcccAgcggctctcaggccttcaat	8	17	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81463318	T	T	81463318	1	4	37	0	1	0	0	0	0	0	0	0	2278	203	7	5		5	C4orf22	4	81463318	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5523676	81463318	109690958	179	46851											
GRID2	2895	broad.mit.edu	37	chr4	94411878	94411878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttatctcatcttacacGgcaaacctcgctgctttcct	5	13	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94411878	T	T	94411878	2	4	37	1	0	0	0	0	0	0	0	1	6838	1103	39	1		1	GRID2	4	94411878	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	12948560	94411878	96742398	180	46852											
NHEDC2	133308	broad.mit.edu	37	chr4	103987462	103987462	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaacttcatcttttgccatCtctttctgaattcatcctta	2	12	5	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103987462	T	T	103987462	1	4	37	0	1	0	0	0	0	0	0	0	10496	928	32	4		4	NHEDC2	4	103987462	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9575584	103987462	87166814	181	46853											
TET2	54790	broad.mit.edu	37	chr4	106155397	106155397	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaataaaacgcacagttagtGaaccttctctctctgggctc	8	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106155397	T	T	106155397	4	4	37	1	0	0	0	0	0	1	0	0	15892	1291	45	3	300	3	TET2	4	106155397	Nonsense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2167935	106155397	84998879	182	46854											
EGF	1950	broad.mit.edu	37	chr4	110914644	110914644	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttcaggcaggctgcagagCtggctttcctgattaggacg	14	9	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110914644	G	G	110914644	1	3	37	0	1	0	0	0	0	0	0	0	5002	812	28	4		4	EGF	4	110914644	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4759247	110914644	80239632	183	46855											
FAM198B	51313	broad.mit.edu	37	chr4	159052016	159052016	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttgttgtctataaaaaccAaatgccttgggtcatgcttt	7	9	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159052016	T	T	159052016	4	4	37	1	0	0	0	0	0	1	0	0	5576	131	5	5	293	5	FAM198B	4	159052016	Nonsense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	48137372	159052016	32102260	184	46856											
RXFP1	59350	broad.mit.edu	37	chr4	159493798	159493798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaactgctctttgccaCgcctttgtattaaccacctt	7	12	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159493798	T	T	159493798	1	4	37	0	1	0	0	0	0	0	0	0	13870	551	19	4		4	RXFP1	4	159493798	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	441782	159493798	31660478	185	46857											
GALNTL6	442117	broad.mit.edu	37	chr4	173301433	173301433	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattttggtcataaaacgcActttaggggctgccattggg	11	7	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173301433	G	G	173301433	1	3	37	0	1	0	0	0	0	0	0	0	6287	174	6	5		5	GALNTL6	4	173301433	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	13807635	173301433	17852843	186	46858											
GALNTL6	442117	broad.mit.edu	37	chr4	173530780	173530780	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctctctctctctgtGtgtgtgtgtgtgtgtgtgtg	12	9	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173530780	C	C	173530780	1	2	37	0	1	0	0	0	0	0	0	0	6287	1392	48	4		4	GALNTL6	4	173530780	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	229347	173530780	17623496	187	46859											
MTNR1A	4543	broad.mit.edu	37	chr4	187455200	187455200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaaaattcctgaagtcCtgtggtttcagtttgggttt	11	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187455200	A	A	187455200	3	1	37	1	0	0	0	0	1	0	0	0	10045	680	24	2	360	2	MTNR1A	4	187455200	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	13924420	187455200	3699076	188	46860											
FAT1	2195	broad.mit.edu	37	chr4	187510357	187510357	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgcttggcatccaatctgAtgtatcccagtgataccctt	7	12	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187510357	G	G	187510357	3	3	37	1	0	0	0	0	1	0	0	0	5746	333	12	5	614	5	FAT1	4	187510357	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	55157	187510357	3643919	189	46861											
FAT1	2195	broad.mit.edu	37	chr4	187542211	187542211	+	Frame_Shift_Del	DEL	A	-	-													tgcacttggacggtaaagtgAaaaatacttgtttcttcata							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	187542211	-	-	187542211	7	5	37	1	0	1	0	1	0	0	0	0	5746	243	9	0	8309	0	FAT1	4	187542211	Frame_Shift_Del	DEL	A	TCGA-17-Z003-01A-01W-0746-08	31854	187542211	3612065	190	46862											
FRG1	2483	broad.mit.edu	37	chr4	190882077	190882077	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaataaattacctacttaGctgggcatggtggtacatgc	9	8	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190882077	A	A	190882077	1	1	37	0	1	0	0	0	0	0	0	0	6106	986	34	4		4	FRG1	4	190882077	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3339866	190882077	272199	191	46863											
DNAH5	1767	broad.mit.edu	37	chr5	13794128	13794128	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccgcaggagggccatatgTtgtacccattcgtttatcca	9	12	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13794128	C	C	13794128	3	2	37	1	0	0	0	0	1	0	0	0	4644	1725	60	5	6075	5	DNAH5	5	13794128	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08		13794128	167121132	192	46864											
DNAH5	1767	broad.mit.edu	37	chr5	13811941	13811941	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaagaaaaccctgtcagtTcacagacaagtgtattcatg	7	9	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13811941	C	C	13811941	1	2	37	0	1	0	0	0	0	0	0	0	4644	1798	62	5		5	DNAH5	5	13811941	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	17813	13811941	167103319	193	46865											
CDH18	1016	broad.mit.edu	37	chr5	19839214	19839214	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacagtccaaagtaaattgTttagcgtgtccatgatttaa	9	6	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19839214	C	C	19839214	1	2	37	0	1	0	0	0	0	0	0	0	3133	1740	60	5		5	CDH18	5	19839214	5'UTR	SNP	T	TCGA-17-Z003-01A-01W-0746-08	6027273	19839214	161076046	194	46866											
CDH12	1010	broad.mit.edu	37	chr5	21752443	21752443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaggggtggctgagtttcGtgaatgacctcctgttactt	12	7	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21752443	T	T	21752443	1	4	37	0	1	0	0	0	0	0	0	0	3128	1160	40	3		3	CDH12	5	21752443	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1913229	21752443	159162817	195	46867											
PRDM9	56979	broad.mit.edu	37	chr5	23509379	23509379	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacactagcatcagcgactGctctgtgtcagcagagagct	11	11	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509379	A	A	23509379	1	1	37	0	1	0	0	0	0	0	0	0	12569	1334	46	4		4	PRDM9	5	23509379	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1756936	23509379	157405881	196	46868											
CDH9	1007	broad.mit.edu	37	chr5	26886246	26886246	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaaggcaatgttcttgttAttacaagatatcttaaatcc	5	8	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26886246	T	T	26886246	1	4	37	0	1	0	0	0	0	0	0	0	3147	464	16	5		5	CDH9	5	26886246	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3376867	26886246	154029014	197	46869											
CDH6	1004	broad.mit.edu	37	chr5	31323411	31323411	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtggacagtgacaaagactCctaatctgttgcctttttca	8	9	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31323411	G	G	31323411	3	3	37	1	0	0	0	0	1	0	0	0	3144	855	30	4	2411	4	CDH6	5	31323411	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4437165	31323411	149591849	198	46870											
NUP155	9631	broad.mit.edu	37	chr5	37331769	37331769	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatagcatcacattttttAaaagtatatataattacctg	3	5	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37331769	G	G	37331769	1	3	37	0	1	0	0	0	0	0	0	0	10851	377	13	5		5	NUP155	5	37331769	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	6008358	37331769	143583491	199	46871											
HEATR7B2	133558	broad.mit.edu	37	chr5	41057162	41057162	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttttaccattgtcatcatCatcacttggggacattttta	5	10	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41057162	G	G	41057162	1	3	37	0	1	0	0	0	0	0	0	0	7102	841	29	4		4	HEATR7B2	5	41057162	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3725393	41057162	139858098	200	46872											
GHR	2690	broad.mit.edu	37	chr5	42468092	42468092	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgcctctttaacatgTtttctttttcacaagcctct	3	12	5	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42468092	C	C	42468092	1	2	37	0	1	0	0	0	0	0	0	0	6435	1740	60	5		5	GHR	5	42468092	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1410930	42468092	138447168	201	46873											
NNT	23530	broad.mit.edu	37	chr5	43613236	43613236	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggcttctgatttggtggtCaaagtaattattcctttttc	8	7	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43613236	G	G	43613236	2	3	37	1	0	0	0	0	0	0	0	1	10605	813	29	4		4	NNT	5	43613236	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1145144	43613236	137302024	202	46874											
HCN1	348980	broad.mit.edu	37	chr5	45481730	45481730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgaaaggaaataatctGgtatgttgacagatgatcta	9	4	2	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45481730	T	T	45481730	1	4	37	0	1	0	0	0	0	0	0	0	7062	1363	47	2		2	HCN1	5	45481730	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1868494	45481730	135433530	203	46875											
CMYA5	202333	broad.mit.edu	37	chr5	79029704	79029705	+	Missense_Mutation	DNP	GA	AT	AT													agctttcatcattgcttaggGaggaatctcagaatgaagaa							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	79029705	AT	AT	79029704	3	1	37	1	0	0	0	0	1	0	0	0	3622	1175	41	4	5122	4	CMYA5	5	79029704	Missense_Mutation	DNP	GA	TCGA-17-Z003-01A-01W-0746-08	33547974	79029704	101885556	204	46876											
SERINC5	256987	broad.mit.edu	37	chr5	79469105	79469105	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaaggaaggaaggaagAaaatgaaatgaaatgaaatg	14	0	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79469105	G	G	79469105	1	3	37	0	1	0	0	0	0	0	0	0	14196	261	9	5		5	SERINC5	5	79469105	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	439401	79469105	101446155	205	46877											
EDIL3	10085	broad.mit.edu	37	chr5	83356068	83356068	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacctaatcaacaggaaatCttctaagaaagaggaacagt	7	8	4	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83356068	G	G	83356068	1	3	37	0	1	0	0	0	0	0	0	0	4955	928	32	4		4	EDIL3	5	83356068	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3886963	83356068	97559192	206	46878											
GPR98	84059	broad.mit.edu	37	chr5	90002055	90002055	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctattcaattaggagctatCaatgtcacatataccacggt	6	10	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90002055	G	G	90002055	3	3	37	1	0	0	0	0	1	0	0	0	6787	816	29	4	8724	4	GPR98	5	90002055	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6645987	90002055	90913205	207	46879											
C5orf36	285600	broad.mit.edu	37	chr5	93755719	93755719	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaagttacaaagcagatcAtgtctcagccaagtctttaa	7	9	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93755719	G	G	93755719	1	3	37	0	1	0	0	0	0	0	0	0	2318	232	8	5		5	C5orf36	5	93755719	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3753664	93755719	87159541	208	46880											
APC	324	broad.mit.edu	37	chr5	112176102	112176102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcaaaattacctccacCtgtggcaaggaaaccaagtc	7	12	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112176102	T	T	112176102	3	4	37	1	0	0	0	0	1	0	0	0	765	681	24	4	4869	4	APC	5	112176102	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	18420383	112176102	68739158	209	46881											
AP3S1	1176	broad.mit.edu	37	chr5	115202461	115202461	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctagaaggaggattgtAagtaaagcatttcatagaca	9	5	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115202461	T	T	115202461	1	4	37	0	1	0	0	0	0	0	0	0	751	377	13	5		5	AP3S1	5	115202461	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3026359	115202461	65712799	210	46882											
SLC27A6	28965	broad.mit.edu	37	chr5	128362981	128362981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttaatagtccaggatcagGacaatttcctttatttttgg	7	7	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128362981	T	T	128362981	3	4	37	1	0	0	0	0	1	0	0	0	14644	1174	41	3	1437	3	SLC27A6	5	128362981	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	13160520	128362981	52552279	211	46883											
IK	3550	broad.mit.edu	37	chr5	140034410	140034410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctttcccccaacctcCtttcttctttctttcttttt	0	16	5	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140034410	A	A	140034410	1	1	37	0	1	0	0	0	0	0	0	0	7678	696	24	2		2	IK	5	140034410	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	11671429	140034410	40880850	212	46884											
ARAP3	64411	broad.mit.edu	37	chr5	141059221	141059221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaccaggatccatgatgtGcactggcaggaggagagggg	17	8	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141059221	T	T	141059221	3	4	37	1	0	0	0	0	1	0	0	0	842	1319	46	3	4165	3	ARAP3	5	141059221	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1024811	141059221	39856039	213	46885											
SPARC	6678	broad.mit.edu	37	chr5	151043764	151043764	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatggggatgaggggagcaCgcagtggagccagctcggtg	19	9	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151043764	G	G	151043764	3	3	37	1	0	0	0	0	1	0	0	0	15111	536	19	4	152	4	SPARC	5	151043764	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9984543	151043764	29871496	214	46886											
HAVCR1	26762	broad.mit.edu	37	chr5	156476071	156476071	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgtaagagtacaatggTgagctggtgggttctctcct	14	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156476071	A	A	156476071	2	1	37	1	0	0	0	0	0	0	0	1	7039	1683	59	5		5	HAVCR1	5	156476071	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5432307	156476071	24439189	215	46887											
CLINT1	9685	broad.mit.edu	37	chr5	157232889	157232889	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaccttaactgaagactgAggtgtgtgggttgaagcatt	12	8	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157232889	T	T	157232889	2	4	37	1	0	0	0	0	0	0	0	1	3563	291	11	5		5	CLINT1	5	157232889	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	756818	157232889	23682371	216	46888											
SLU7	10569	broad.mit.edu	37	chr5	159841162	159841162	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttcaggagtgtaaaatttAtataagaaacacaaagataa	7	3	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159841162	G	G	159841162	1	3	37	0	1	0	0	0	0	0	0	0	14869	464	16	5		5	SLU7	5	159841162	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2608273	159841162	21074098	217	46889											
MAT2B	27430	broad.mit.edu	37	chr5	162930318	162930318	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcctgcgctctctgcagGcagaagcgaacaaagaccca	11	14	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162930318	C	C	162930318	1	2	37	0	1	0	0	0	0	0	0	0	9423	1218	42	4		4	MAT2B	5	162930318	5'Flank	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3089156	162930318	17984942	218	46890											
DCDC2	51473	broad.mit.edu	37	chr6	24291344	24291344	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accaacaattagaattttaaCcaacatttaaagaattgctt	3	7	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24291344	G	G	24291344	1	3	37	0	1	0	0	0	0	0	0	0	4318	522	18	4		4	DCDC2	6	24291344	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08		24291344	146823723	219	46891											
SLC17A3	10786	broad.mit.edu	37	chr6	25861921	25861921	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttttcccaaattgcaaactGacccccaagtattgaggact	6	12	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25861921	C	C	25861921	3	2	37	1	0	0	0	0	1	0	0	0	14531	1299	45	4	972	4	SLC17A3	6	25861921	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1570577	25861921	145253146	220	46892											
ZNF184	7738	broad.mit.edu	37	chr6	27419946	27419946	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccagtatgaattttcagGtgttgagcaagggatgacca	11	7	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27419946	A	A	27419946	2	1	37	1	0	0	0	0	0	0	0	1	17877	1252	44	4		4	ZNF184	6	27419946	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1558025	27419946	143695121	221	46893											
OR12D2	26529	broad.mit.edu	37	chr6	29365302	29365302	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaccggattgttgccatcAtgtacactgtggtcactcct	10	11	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29365302	C	C	29365302	3	2	37	1	0	0	0	0	1	0	0	0	11025	217	8	5	828	5	OR12D2	6	29365302	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1945356	29365302	141749765	222	46894											
SNRPC	6631	broad.mit.edu	37	chr6	34725738	34725738	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacccatgactctgtaagtGgcatatctattcatagtttc	6	10	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34725738	A	A	34725738	1	1	37	0	1	0	0	0	0	0	0	0	14977	1363	47	4		4	SNRPC	6	34725738	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5360436	34725738	136389329	223	46895											
TREM1	54210	broad.mit.edu	37	chr6	41250157	41250157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcaccaccaagcggatgcGatcgaacagcatgtgaggct	13	11	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41250157	T	T	41250157	3	4	37	1	0	0	0	0	1	0	0	0	16594	1058	37	3	334	3	TREM1	6	41250157	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6524419	41250157	129864910	224	46896											
GUCA1A	2978	broad.mit.edu	37	chr6	42146406	42146406	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgagtcccagctctgcCtaggcccccgggtaccctgc	10	18	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42146406	T	T	42146406	1	4	37	0	1	0	0	0	0	0	0	0	6953	696	24	4		4	GUCA1A	6	42146406	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	896249	42146406	128968661	225	46897											
TTBK1	84630	broad.mit.edu	37	chr6	43237441	43237441	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagccccctgcgacgactgGcgtcctccgtgttctcctcc	9	19	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43237441	C	C	43237441	1	2	37	0	1	0	0	0	0	0	0	0	16802	1218	42	4		4	TTBK1	6	43237441	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1091035	43237441	127877626	226	46898											
XPO5	57510	broad.mit.edu	37	chr6	43507196	43507196	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgggcagggagaagagaTagatctcctccagggacttg	14	7	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43507196	C	C	43507196	1	2	37	0	1	0	0	0	0	0	0	0	17574	1421	49	5		5	XPO5	6	43507196	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	269755	43507196	127607871	227	46899											
CRISP1	167	broad.mit.edu	37	chr6	49814333	49814333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactccaattacacttgacCatgatacaggataagatgtc	7	9	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49814333	A	A	49814333	3	1	37	1	0	0	0	0	1	0	0	0	3911	595	21	2	430	2	CRISP1	6	49814333	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6307137	49814333	121300734	228	46900											
TFAP2D	83741	broad.mit.edu	37	chr6	50683242	50683242	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccctcatgagccatggCtctcagtatggaatgcaccc	9	14	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683242	A	A	50683242	2	1	37	1	0	0	0	0	0	0	0	1	15913	784	28	3		3	TFAP2D	6	50683242	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	868909	50683242	120431825	229	46901											
EFHC1	114327	broad.mit.edu	37	chr6	52303263	52303263	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccttcaaggcaagttaatAaaacgccagcggctagccaa	8	11	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52303263	T	T	52303263	2	4	37	1	0	0	0	0	0	0	0	1	4986	352	13	5		5	EFHC1	6	52303263	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1620021	52303263	118811804	230	46902											
DST	667	broad.mit.edu	37	chr6	56484807	56484807	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccctgcatgatgtagccTgtgtgatcggacacactggc	12	12	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56484807	A	A	56484807	1	1	37	0	1	0	0	0	0	0	0	0	4823	1580	55	5		5	DST	6	56484807	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4181544	56484807	114630260	231	46903											
PRIM2	5558	broad.mit.edu	37	chr6	57255570	57255573	+	Intron	DEL	TATC	-	-													tatgtgtaccacactttcttTatctagtctgtcactgaagg					rs139708111		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57255573	-	-	57255570	6	5	37	0	1	1	0	1	0	0	0	0	12597	1769	61	0		0	PRIM2	6	57255570	Intron	DEL	TATC	TCGA-17-Z003-01A-01W-0746-08	770763	57255570	113859497	232	46904											
PHF3	23469	broad.mit.edu	37	chr6	64422420	64422420	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcgaggtctccacagtttAtcaacctgaaaagggatcct	9	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64422420	G	G	64422420	3	3	37	1	0	0	0	0	1	0	0	0	11931	449	16	5	4994	5	PHF3	6	64422420	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	7166850	64422420	106692647	233	46905											
EYS	346007	broad.mit.edu	37	chr6	66005981	66005981	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacattgacaacacacaAtctgccaatgtaactaagag	6	10	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66005981	G	G	66005981	2	3	37	1	0	0	0	0	0	0	0	1	5375	98	4	5		5	EYS	6	66005981	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1583561	66005981	105109086	234	46906											
COL9A1	1297	broad.mit.edu	37	chr6	70944769	70944769	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcctaacaggtgttctttCagaggttacaaaaccttcac	6	11	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70944769	T	T	70944769	1	4	37	0	1	0	0	0	0	0	0	0	3739	841	29	4		4	COL9A1	6	70944769	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4938788	70944769	100170298	235	46907											
COL12A1	1303	broad.mit.edu	37	chr6	75829168	75829168	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactcagacttgacctcatCgctgtattgcacaaatgaaa	7	10	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75829168	G	G	75829168	3	3	37	1	0	0	0	0	1	0	0	0	3701	884	31	4	2171	4	COL12A1	6	75829168	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4884399	75829168	95285899	236	46908											
COL12A1	1303	broad.mit.edu	37	chr6	75837950	75837950	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggttttaaaaggtataaaAgcaacattaacatattgaca	6	4	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75837950	G	G	75837950	1	3	37	0	1	0	0	0	0	0	0	0	3701	87	3	5		5	COL12A1	6	75837950	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	8782	75837950	95277117	237	46909											
RARS2	57038	broad.mit.edu	37	chr6	88240714	88240714	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacaggtcattgttatctcTaacacggaaagaaagcaaaa	7	7	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88240714	A	A	88240714	1	1	37	0	1	0	0	0	0	0	0	0	13167	1537	53	5		5	RARS2	6	88240714	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	12402764	88240714	82874353	238	46910											
C6orf167	253714	broad.mit.edu	37	chr6	97676987	97676987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttcctcattcttagacaCcaagaattcctttgctttct	3	12	3	2	rs141217754		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97676987	A	A	97676987	3	1	37	1	0	0	0	0	1	0	0	0	2365	507	18	3	1957	3	C6orf167	6	97676987	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9436273	97676987	73438080	239	46911											
GRIK2	2898	broad.mit.edu	37	chr6	102069929	102069929	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaacattgctacccaataCtacccttacctatgataccc	3	15	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102069929	G	G	102069929	3	3	37	1	0	0	0	0	1	0	0	0	6840	565	20	4	227	4	GRIK2	6	102069929	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4392942	102069929	69045138	240	46912											
LIN28B	389421	broad.mit.edu	37	chr6	105405174	105405174	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttttactgtgaatttcttTcttcttttctcctccccctc	3	13	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105405174	A	A	105405174	1	1	37	0	1	0	0	0	0	0	0	0	8879	1798	62	5		5	LIN28B	6	105405174	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3335245	105405174	65709893	241	46913											
PRDM1	639	broad.mit.edu	37	chr6	106555120	106555120	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccggctcgaggacgtggAggatgacatcagtgtgatct	15	8	2	3	rs76571405		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106555120	T	T	106555120	3	4	37	1	0	0	0	0	1	0	0	0	12556	304	11	5	2276	5	PRDM1	6	106555120	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1149946	106555120	64559947	242	46914											
SOBP	55084	broad.mit.edu	37	chr6	107954957	107954957	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagactcttggaatatcccGctaacagatgctcggaggaa	10	11	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107954957	A	A	107954957	2	1	37	1	0	0	0	0	0	0	0	1	15026	1074	38	4		4	SOBP	6	107954957	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1399837	107954957	63160110	243	46915											
ARMC2	84071	broad.mit.edu	37	chr6	109286139	109286139	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatattaaaattaaagacaGattctgacctaataacttct	3	7	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109286139	T	T	109286139	1	4	37	0	1	0	0	0	0	0	0	0	955	957	33	3		3	ARMC2	6	109286139	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1331182	109286139	61828928	244	46916											
KIAA1919	91749	broad.mit.edu	37	chr6	111585053	111585053	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatctcaatgtcggctaccAccgttggtctttatcttgtt	8	10	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111585053	G	G	111585053	3	3	37	1	0	0	0	0	1	0	0	0	8332	159	6	5	227	5	KIAA1919	6	111585053	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2298914	111585053	59530014	245	46917											
LAMA4	3910	broad.mit.edu	37	chr6	112463320	112463320	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcaaactcatgtgcttaCgtttttgcttccgaggtaca	7	10	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112463320	T	T	112463320	5	4	37	1	0	0	0	0	0	0	1	0	8680	550	19	4	2883	4	LAMA4	6	112463320	Splice_Site	SNP	C	TCGA-17-Z003-01A-01W-0746-08	878267	112463320	58651747	246	46918											
ROS1	6098	broad.mit.edu	37	chr6	117704427	117704427	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgagagaaagtattatcaTaaatatagagctattcagta	8	4	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117704427	C	C	117704427	1	2	37	0	1	0	0	0	0	0	0	0	13642	1421	49	5		5	ROS1	6	117704427	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5241107	117704427	53410640	247	46919											
LAMA2	3908	broad.mit.edu	37	chr6	129802476	129802476	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgccaattgatgtaggAacagaaatcaacctgtcatt	8	9	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129802476	G	G	129802476	2	3	37	1	0	0	0	0	0	0	0	1	8678	233	9	5		5	LAMA2	6	129802476	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	12098049	129802476	41312591	248	46920											
MYB	4602	broad.mit.edu	37	chr6	135511239	135511239	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacataactttaaaacataGgttatttttgtgtgtttatc	5	4	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135511239	A	A	135511239	1	1	37	0	1	0	0	0	0	0	0	0	10101	1015	35	4		4	MYB	6	135511239	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5708763	135511239	35603828	249	46921											
VTA1	51534	broad.mit.edu	37	chr6	142468415	142468415	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgagtaggaagtggtgagttCggagtagagatggccgcgct	18	6	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142468415	A	A	142468415	1	1	37	0	1	0	0	0	0	0	0	0	17360	899	31	3		3	VTA1	6	142468415	5'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6957176	142468415	28646652	250	46922											
GRM1	2911	broad.mit.edu	37	chr6	146720539	146720539	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgaggccaaatatatcgcGttcaccatgtacaccacctg	7	13	1	0	rs114187147	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146720539	A	A	146720539	2	1	37	1	0	0	0	0	0	0	0	1	6862	1132	40	4		4	GRM1	6	146720539	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4252124	146720539	24394528	251	46923											
ULBP3	79465	broad.mit.edu	37	chr6	150386651	150386651	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctatccttctcccacttctCtttcatccgcctggctccag	5	18	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150386651	G	G	150386651	3	3	37	1	0	0	0	0	1	0	0	0	17100	922	32	4	230	4	ULBP3	6	150386651	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3666112	150386651	20728416	252	46924											
MYCT1	80177	broad.mit.edu	37	chr6	153042834	153042834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgtttttagttgaaaaCctatttaaaaattgatttag	5	5	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153042834	A	A	153042834	1	1	37	0	1	0	0	0	0	0	0	0	10116	522	18	3		3	MYCT1	6	153042834	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2656183	153042834	18072233	253	46925											
NOX3	50508	broad.mit.edu	37	chr6	155776924	155776924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccctcattcaaaatccagCaccccatcatgatacttgtt	4	14	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155776924	T	T	155776924	3	4	37	1	0	0	0	0	1	0	0	0	10652	710	25	4	1747	4	NOX3	6	155776924	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2734090	155776924	15338143	254	46926											
FNDC1	84624	broad.mit.edu	37	chr6	159682107	159682107	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgctgtatgcatttgtaAaaagtagaactcaaagcctg	9	6	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159682107	G	G	159682107	1	3	37	0	1	0	0	0	0	0	0	0	6026	29	1	5		5	FNDC1	6	159682107	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3905183	159682107	11432960	255	46927											
ACAT2	39	broad.mit.edu	37	chr6	160199778	160199778	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaccctgttacacacactgGagagaatgggcagaagtcgt	12	9	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160199778	C	C	160199778	3	2	37	1	0	0	0	0	1	0	0	0	122	1175	41	4	1145	4	ACAT2	6	160199778	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	517671	160199778	10915289	256	46928											
QKI	9444	broad.mit.edu	37	chr6	163956145	163956145	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaagaagtgaagaaattAttggtacctgcagtaagtaa	11	3	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163956145	G	G	163956145	2	3	37	1	0	0	0	0	0	0	0	1	12981	446	16	5		5	QKI	6	163956145	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3756367	163956145	7158922	257	46929											
C6orf118	168090	broad.mit.edu	37	chr6	165723210	165723211	+	5'Flank	DNP	CC	AG	AG													aacctccccccaactcctccCctcttctgtgccttctggaa							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	165723211	AG	AG	165723210	1	1	37	0	1	0	0	0	0	0	0	0	2346	638	22	2		2	C6orf118	6	165723210	5'Flank	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	1767065	165723210	5391857	258	46930											
PDE10A	10846	broad.mit.edu	37	chr6	165832098	165832098	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacatctaccgtaagaggaTaggacattctacttctagct	8	10	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165832098	C	C	165832098	1	2	37	0	1	0	0	0	0	0	0	0	11724	1421	49	5		5	PDE10A	6	165832098	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	108888	165832098	5282969	259	46931											
GARS	2617	broad.mit.edu	37	chr7	30643155	30643155	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataagaagtgttctgtcgaAaagaaatcagaaatggaaag	11	3	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30643155	C	C	30643155	3	2	37	1	0	0	0	0	1	0	0	0	6304	11	1	5	724	5	GARS	7	30643155	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08		30643155	128495508	260	46932											
CCDC129	223075	broad.mit.edu	37	chr7	31691641	31691641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaggagaccgggctcagCaaatcagagaagggatttta	13	6	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31691641	A	A	31691641	3	1	37	1	0	0	0	0	1	0	0	0	2790	711	25	3	2846	3	CCDC129	7	31691641	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1048486	31691641	127447022	261	46933											
NPSR1	387129	broad.mit.edu	37	chr7	34867013	34867013	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctcttttctttgggcagAaaagcaagccagggtcctca	9	12	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34867013	G	G	34867013	3	3	37	1	0	0	0	0	1	0	0	0	10695	260	9	5	497	5	NPSR1	7	34867013	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3175372	34867013	124271650	262	46934											
ELMO1	9844	broad.mit.edu	37	chr7	36934500	36934500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctggttcatcctctcGgactggcggattttcaggat	10	11	4	0	rs140840691		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36934500	T	T	36934500	2	4	37	1	0	0	0	0	0	0	0	1	5107	1103	39	1		1	ELMO1	7	36934500	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2067487	36934500	122204163	263	46935											
TXNDC3	51314	broad.mit.edu	37	chr7	37927918	37927918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacagtttgccggtcaaCcagttgtatggcagcgattc	12	9	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37927918	A	A	37927918	3	1	37	1	0	0	0	0	1	0	0	0	16924	506	18	3	1337	3	TXNDC3	7	37927918	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	993418	37927918	121210745	264	46936											
AMPH	273	broad.mit.edu	37	chr7	38431763	38431763	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagactcaggtctgggccttCcgctgtgccacacagcctcc	10	17	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38431763	G	G	38431763	1	3	37	0	1	0	0	0	0	0	0	0	588	870	30	4		4	AMPH	7	38431763	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	503845	38431763	120706900	265	46937											
POM121L12	285877	broad.mit.edu	37	chr7	53103754	53103754	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcgtgcctggaacccAggacggacctggagcccggt	15	13	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103754	T	T	53103754	2	4	37	1	0	0	0	0	0	0	0	1	12336	175	7	5		5	POM121L12	7	53103754	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	14671991	53103754	106034909	266	46938											
ZNF117	51351	broad.mit.edu	37	chr7	64439925	64439925	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaacataactgaaagaaaTaaaagtaacaaactacttca	3	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64439925	C	C	64439925	1	2	37	0	1	0	0	0	0	0	0	0	17843	1421	49	5		5	ZNF117	7	64439925	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	11336171	64439925	94698738	267	46939											
FKBP6	8468	broad.mit.edu	37	chr7	72756929	72756929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccagggtggcacacaggCttccggatggagaagcgtgc	18	10	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72756929	A	A	72756929	1	1	37	0	1	0	0	0	0	0	0	0	5969	812	28	3		3	FKBP6	7	72756929	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	8317004	72756929	86381734	268	46940											
ABHD11	83451	broad.mit.edu	37	chr7	73152074	73152074	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccgtcagcacctggggagTggggtgagacggggctgcgt	19	10	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73152074	A	A	73152074	1	1	37	0	1	0	0	0	0	0	0	0	75	1711	59	5		5	ABHD11	7	73152074	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	395145	73152074	85986589	269	46941											
RFC2	5982	broad.mit.edu	37	chr7	73661077	73661077	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacattttaattttattccTcacaacgtcaatgcccctga	3	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73661077	C	C	73661077	3	2	37	1	0	0	0	0	1	0	0	0	13353	1550	54	5	743	5	RFC2	7	73661077	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	509003	73661077	85477586	270	46942											
SEMA3C	10512	broad.mit.edu	37	chr7	80447562	80447562	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactctaaaatacagtttcAaaaatccttgacactaatat	2	8	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80447562	G	G	80447562	1	3	37	0	1	0	0	0	0	0	0	0	14139	145	5	5		5	SEMA3C	7	80447562	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	6786485	80447562	78691101	271	46943											
CACNA2D1	781	broad.mit.edu	37	chr7	81643766	81643766	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctctgtcataattgtgTtgaccaactgaaaacgtgaa	9	8	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81643766	C	C	81643766	2	2	37	1	0	0	0	0	0	0	0	1	2574	1722	60	5		5	CACNA2D1	7	81643766	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1196204	81643766	77494897	272	46944											
CDK14	5218	broad.mit.edu	37	chr7	90328883	90328886	+	Intron	DEL	AAGT	-	-													ctgcatctgactttatgttgAagttagtgccccagtgcacc							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90328886	-	-	90328883	6	5	37	0	1	1	0	1	0	0	0	0	3160	261	9	0		0	CDK14	7	90328883	Intron	DEL	AAGT	TCGA-17-Z003-01A-01W-0746-08	8685117	90328883	68809780	273	46945											
COL1A2	1278	broad.mit.edu	37	chr7	94041394	94041394	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatagggtcttcctggttcCcctggaaatatcggccccgc	10	13	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94041394	A	A	94041394	2	1	37	1	0	0	0	0	0	0	0	1	3710	610	22	2		2	COL1A2	7	94041394	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3712511	94041394	65097269	274	46946											
ASB4	51666	broad.mit.edu	37	chr7	95157271	95157271	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcccacatggagacccccCtggccatcgccgcctactgg	10	18	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95157271	T	T	95157271	2	4	37	1	0	0	0	0	0	0	0	1	1029	680	24	4		4	ASB4	7	95157271	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1115877	95157271	63981392	275	46947											
RELN	5649	broad.mit.edu	37	chr7	103180650	103180650	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaagggactgacctgatcGataacccaggggctgtagaa	13	9	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103180650	T	T	103180650	2	4	37	1	0	0	0	0	0	0	0	1	13328	1048	37	3		3	RELN	7	103180650	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	8023379	103180650	55958013	276	46948											
RELN	5649	broad.mit.edu	37	chr7	103322825	103322825	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atattagctcctctatgatgGactctcaaatcaaaagagct	6	9	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103322825	T	T	103322825	1	4	37	0	1	0	0	0	0	0	0	0	13328	1189	41	3		3	RELN	7	103322825	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	142175	103322825	55815838	277	46949											
DLD	1738	broad.mit.edu	37	chr7	107557190	107557190	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttaaatttctaagcctatCaatttatgtaggtgtgtatt	6	6	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107557190	T	T	107557190	1	4	37	0	1	0	0	0	0	0	0	0	4591	841	29	4		4	DLD	7	107557190	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4234365	107557190	51581473	278	46950											
DOCK4	9732	broad.mit.edu	37	chr7	111409724	111409724	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatataagaggagggtaTatgcagcttctgcaagtcac	11	8	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111409724	A	A	111409724	3	1	37	1	0	0	0	0	1	0	0	0	4729	1406	49	5	2306	5	DOCK4	7	111409724	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3852534	111409724	47728939	279	46951											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518398	113518398	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttcagtatgatgtttggAaaaaggagagctattctgag	11	3	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113518398	G	G	113518398	3	3	37	1	0	0	0	0	1	0	0	0	12472	246	9	5	623	5	PPP1R3A	7	113518398	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2108674	113518398	45620265	280	46952											
KCND2	3751	broad.mit.edu	37	chr7	119915005	119915005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcactgggaagctccactatCctcgccacgagtgcatctct	9	15	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119915005	A	A	119915005	3	1	37	1	0	0	0	0	1	0	0	0	8089	855	30	3	321	3	KCND2	7	119915005	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6396607	119915005	39223658	281	46953											
HYAL4	23553	broad.mit.edu	37	chr7	123516914	123516914	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcacctctgcaggaacaAtggcaggtgcataaggaaga	11	10	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123516914	G	G	123516914	3	3	37	1	0	0	0	0	1	0	0	0	7536	101	4	5	1161	5	HYAL4	7	123516914	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3601909	123516914	35621749	282	46954											
SPAM1	6677	broad.mit.edu	37	chr7	123594355	123594355	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttcaatgtagaaataaAaagaaatgatgatctcagct	7	5	2	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123594355	G	G	123594355	3	3	37	1	0	0	0	0	1	0	0	0	15102	14	1	5	733	5	SPAM1	7	123594355	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	77441	123594355	35544308	283	46955											
GRM8	2918	broad.mit.edu	37	chr7	126750299	126750299	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaactgccctttcattaccCctgggtgtgccagaagcctg	10	13	1	2	rs148110562	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126750299	T	T	126750299	1	4	37	0	1	0	0	0	0	0	0	0	6869	638	22	4		4	GRM8	7	126750299	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3155944	126750299	32388364	284	46956											
UBE2H	7328	broad.mit.edu	37	chr7	129474736	129474736	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatagtctgcttctcatggtTaggaaataatagtctttctg	8	6	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129474736	A	A	129474736	1	1	37	0	1	0	0	0	0	0	0	0	16984	1769	61	5		5	UBE2H	7	129474736	3'UTR	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2724437	129474736	29663927	285	46957											
CHRM2	1129	broad.mit.edu	37	chr7	136623209	136623209	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgatctgctccttcccctGgatgcgcacggcctggatgt	11	14	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136623209	A	A	136623209	1	1	37	0	1	0	0	0	0	0	0	0	3408	1363	47	4		4	CHRM2	7	136623209	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	7148473	136623209	22515454	286	46958											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259419	147259419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataagtagttccaccaatGgtttgtttctttggtgctat	9	6	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147259419	T	T	147259419	1	4	37	0	1	0	0	0	0	0	0	0	3679	1363	47	2		2	CNTNAP2	7	147259419	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	10636210	147259419	11879244	287	46959											
MLL3	58508	broad.mit.edu	37	chr7	151971648	151971648	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaagtgaacacataagaAgtcagaagaaattatgtaaa	10	4	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151971648	G	G	151971648	1	3	37	0	1	0	0	0	0	0	0	0	9715	87	3	5		5	MLL3	7	151971648	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	4712229	151971648	7167015	288	46960											
EFHA2	286097	broad.mit.edu	37	chr8	16976124	16976124	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattctactctccacttctAtgagtttgactttttagatt	4	9	3	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16976124	G	G	16976124	1	3	37	0	1	0	0	0	0	0	0	0	4984	464	16	5		5	EFHA2	8	16976124	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08		16976124	129387898	289	46961											
SLC18A1	6570	broad.mit.edu	37	chr8	20002997	20002997	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccccttgcagaacccgtcAcagctcaagtttaatcaacc	5	16	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20002997	G	G	20002997	1	3	37	0	1	0	0	0	0	0	0	0	14538	174	6	5		5	SLC18A1	8	20002997	3'UTR	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3026873	20002997	126361025	290	46962											
BMP1	649	broad.mit.edu	37	chr8	22035126	22035126	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagctgtggctctagaaaTggtgcttccttcccatgttc	9	12	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22035126	C	C	22035126	1	2	37	0	1	0	0	0	0	0	0	0	1462	1479	51	5		5	BMP1	8	22035126	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2032129	22035126	124328896	291	46963											
PPP3CC	5533	broad.mit.edu	37	chr8	22350516	22350516	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtctgtgaatggaaaagCaccacttgctactggagagg	12	8	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22350516	T	T	22350516	1	4	37	0	1	0	0	0	0	0	0	0	12500	725	25	4		4	PPP3CC	8	22350516	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	315390	22350516	124013506	292	46964											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24250787	24250788	+	Missense_Mutation	DNP	CC	AA	AA													gttttcaggaaaggtatgaaCctgaagttcaatatcagatg							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24250788	AA	AA	24250787	3	1	37	1	0	0	0	0	1	0	0	0	254	507	18	3	230	3	ADAMDEC1	8	24250787	Missense_Mutation	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	1900271	24250787	122113235	293	46965											
KIF13B	23303	broad.mit.edu	37	chr8	28998003	28998003	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctctcctttctggttgatGatgggaacagcgtattgtaa	10	8	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28998003	A	A	28998003	2	1	37	1	0	0	0	0	0	0	0	1	8345	1280	45	4		4	KIF13B	8	28998003	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4747216	28998003	117366019	294	46966											
ADAM9	8754	broad.mit.edu	37	chr8	38884267	38884267	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcataatcttggaatgaaTcacgatgatgggagagattg	13	4	3	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38884267	A	A	38884267	3	1	37	1	0	0	0	0	1	0	0	0	253	1432	50	5	1110	5	ADAM9	8	38884267	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	9886264	38884267	107479755	295	46967											
ADAM2	2515	broad.mit.edu	37	chr8	39678647	39678647	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccaactgaagactccagGggttctattccataactaac	7	11	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39678647	A	A	39678647	2	1	37	1	0	0	0	0	0	0	0	1	241	1219	43	4		4	ADAM2	8	39678647	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	794380	39678647	106685375	296	46968											
SNAI2	6591	broad.mit.edu	37	chr8	49832983	49832983	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catggagtaactctcatagaGatacggggaaataatcactg	10	7	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49832983	C	C	49832983	3	2	37	1	0	0	0	0	1	0	0	0	14941	942	33	4	717	4	SNAI2	8	49832983	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	10154336	49832983	96531039	297	46969											
RP1	6101	broad.mit.edu	37	chr8	55533480	55533480	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accatgtattcgctatggtgCtgtgattctggagataattt	10	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55533480	G	G	55533480	1	3	37	0	1	0	0	0	0	0	0	0	13643	812	28	4		4	RP1	8	55533480	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5700497	55533480	90830542	298	46970											
CLVS1	157807	broad.mit.edu	37	chr8	62289355	62289355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtatgttcaatgaatgCgcaatacaagaccatgtgtg	11	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62289355	A	A	62289355	1	1	37	0	1	0	0	0	0	0	0	0	3603	783	27	3		3	CLVS1	8	62289355	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6755875	62289355	84074667	299	46971											
YTHDF3	253943	broad.mit.edu	37	chr8	64098705	64098705	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtgatattttgttttgcaGagtaacagctatccaccaat	7	7	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64098705	C	C	64098705	5	2	37	1	0	0	0	0	0	0	1	0	17627	956	33	4	149	4	YTHDF3	8	64098705	Splice_Site	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1809350	64098705	82265317	300	46972											
PREX2	80243	broad.mit.edu	37	chr8	68950606	68950606	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcccagaactcatctaTccagctcacagtttctacct	4	15	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68950606	C	C	68950606	1	2	37	0	1	0	0	0	0	0	0	0	12583	1450	50	5		5	PREX2	8	68950606	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4851901	68950606	77413416	301	46973											
PREX2	80243	broad.mit.edu	37	chr8	69050646	69050646	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatattgtttttctttctttGtagacagatgaacaagccat	6	6	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69050646	C	C	69050646	1	2	37	0	1	0	0	0	0	0	0	0	12583	1392	48	4		4	PREX2	8	69050646	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	100040	69050646	77313376	302	46974											
SLCO5A1	81796	broad.mit.edu	37	chr8	70743942	70743942	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatgtttccttttgattttTgtaaggaaagtaagtttcag	8	4	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70743942	C	C	70743942	1	2	37	0	1	0	0	0	0	0	0	0	14845	1827	63	5		5	SLCO5A1	8	70743942	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1693296	70743942	75620080	303	46975											
ZFHX4	79776	broad.mit.edu	37	chr8	77690536	77690536	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaaggtcaagttgaatctGgtacaacatgtccgttcggt	10	9	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77690536	C	C	77690536	2	2	37	1	0	0	0	0	0	0	0	1	17761	1335	47	4		4	ZFHX4	8	77690536	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6946594	77690536	68673486	304	46976											
ZFHX4	79776	broad.mit.edu	37	chr8	77767647	77767647	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcaccacaggaagttcCggagatgtgaaaccggcttt	12	9	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767647	A	A	77767647	2	1	37	1	0	0	0	0	0	0	0	1	17761	639	23	1		1	ZFHX4	8	77767647	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	77111	77767647	68596375	305	46977											
IL7	3574	broad.mit.edu	37	chr8	79672800	79672800	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatgtcagcatggtgttccTccaaagtattgaatttgagt	9	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79672800	C	C	79672800	1	2	37	0	1	0	0	0	0	0	0	0	7774	1566	54	5		5	IL7	8	79672800	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1905153	79672800	66691222	306	46978											
RUNX1T1	862	broad.mit.edu	37	chr8	92982976	92982976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtgcgctccatcttggcCctctctgttgtgatcatgtc	9	14	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92982976	A	A	92982976	3	1	37	1	0	0	0	0	1	0	0	0	13858	622	22	2	373	2	RUNX1T1	8	92982976	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	13310176	92982976	53381046	307	46979											
RIMS2	9699	broad.mit.edu	37	chr8	105105708	105105708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttaacagtatcgatcaGgatgggatcctcatagaggg	13	6	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105105708	C	C	105105708	3	2	37	1	0	0	0	0	1	0	0	0	13479	1015	35	4		4	RIMS2	8	105105708	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	12122732	105105708	41258314	308	46980											
PKHD1L1	93035	broad.mit.edu	37	chr8	110394800	110394800	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgggaatgtaccttcaaCgtatgtaggaatcttctctt	9	8	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110394800	T	T	110394800	2	4	37	1	0	0	0	0	0	0	0	1	12067	550	19	4		4	PKHD1L1	8	110394800	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5289092	110394800	35969222	309	46981											
PKHD1L1	93035	broad.mit.edu	37	chr8	110466858	110466858	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcaattaattctcaaaagAgaagagaggatagaaaagaa	10	3	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110466858	G	G	110466858	1	3	37	0	1	0	0	0	0	0	0	0	12067	319	11	5		5	PKHD1L1	8	110466858	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	72058	110466858	35897164	310	46982											
CSMD3	114788	broad.mit.edu	37	chr8	113504781	113504781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcccatgatacaggtgaGtgttgaataaccttgaagaa	9	7	1	5			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113504781	A	A	113504781	3	1	37	1	0	0	0	0	1	0	0	0	3980	1029	36	4	6072	4	CSMD3	8	113504781	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3037923	113504781	32859241	311	46983											
CSMD3	114788	broad.mit.edu	37	chr8	113569006	113569006	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctaccaatacaggaaggcAgaggatagtcccatgccctt	9	12	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113569006	G	G	113569006	3	3	37	1	0	0	0	0	1	0	0	0	3980	188	7	5	7091	5	CSMD3	8	113569006	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	64225	113569006	32795016	312	46984											
COL14A1	7373	broad.mit.edu	37	chr8	121259925	121259925	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgcattacgtgggacccCccatcttccccggtgaaagg	11	14	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121259925	T	T	121259925	2	4	37	1	0	0	0	0	0	0	0	1	3703	610	22	4		4	COL14A1	8	121259925	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	7690919	121259925	25104097	313	46985											
MTBP	27085	broad.mit.edu	37	chr8	121530874	121530874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaattcacaggattgaaCtctaaagctgaaataatagg	9	5	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121530874	A	A	121530874	1	1	37	0	1	0	0	0	0	0	0	0	10006	580	20	3		3	MTBP	8	121530874	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	270949	121530874	24833148	314	46986											
SNTB1	6641	broad.mit.edu	37	chr8	121768026	121768026	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagtactatgttccaagttAtgttctaatagctttacaga	6	6	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121768026	T	T	121768026	1	4	37	0	1	0	0	0	0	0	0	0	14986	464	16	5		5	SNTB1	8	121768026	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	237152	121768026	24595996	315	46987											
NSMCE2	286053	broad.mit.edu	37	chr8	126296135	126296135	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgggcgcagtggctcacgCctgtaatcccagcattttgg	13	13	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126296135	T	T	126296135	1	4	37	0	1	0	0	0	0	0	0	0	10771	754	26	4		4	NSMCE2	8	126296135	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4528109	126296135	20067887	316	46988											
KCNQ3	3786	broad.mit.edu	37	chr8	133198302	133198302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttcatcactctggaagcCcaaccagaagcatttacccc	5	15	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133198302	A	A	133198302	1	1	37	0	1	0	0	0	0	0	0	0	8154	638	22	2		2	KCNQ3	8	133198302	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6902167	133198302	13165720	317	46989											
FAM135B	51059	broad.mit.edu	37	chr8	139153549	139153550	+	Missense_Mutation	DNP	GG	TT	TT													ccggaaccggggccgtgtgaGgaccgatcggatgatgatgt							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	139153550	TT	TT	139153549	3	4	37	1	0	0	0	0	1	0	0	0	5495	1000	35	2	554	2	FAM135B	8	139153549	Missense_Mutation	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	5955247	139153549	7210473	318	46990											
FAM135B	51059	broad.mit.edu	37	chr8	139487412	139487412	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtagttcaagtcagcatcTattaactgaggcaccaaact	9	9	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139487412	C	C	139487412	1	2	37	0	1	0	0	0	0	0	0	0	5495	1537	53	5		5	FAM135B	8	139487412	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	333863	139487412	6876610	319	46991											
LY6D	8581	broad.mit.edu	37	chr8	143867036	143867036	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgcagaagcgagagctGgccgggcagaccacagaatg	15	10	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143867036	T	T	143867036	2	4	37	1	0	0	0	0	0	0	0	1	9178	1335	47	2		2	LY6D	8	143867036	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4379624	143867036	2496986	320	46992											
KDM4C	23081	broad.mit.edu	37	chr9	7046800	7046800	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctctgagaatatttagatGaatggtaatgacttttgtta	8	3	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7046800	T	T	7046800	1	4	37	0	1	0	0	0	0	0	0	0	8200	1305	45	3		3	KDM4C	9	7046800	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08		7046800	134166631	321	46993											
FREM1	158326	broad.mit.edu	37	chr9	14737453	14737453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctacagtcttttgtttGccatttcccttgtctttgaa	5	11	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14737453	T	T	14737453	3	4	37	1	0	0	0	0	1	0	0	0	6104	1328	46	3	62	3	FREM1	9	14737453	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	7690653	14737453	126475978	322	46994											
SLC24A2	25769	broad.mit.edu	37	chr9	19521004	19521004	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcagggatggaggtcccagCagccaagatggtcaggccca	14	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19521004	G	G	19521004	3	3	37	1	0	0	0	0	1	0	0	0	14580	710	25	4	369	4	SLC24A2	9	19521004	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4783551	19521004	121692427	323	46995											
PIGO	84720	broad.mit.edu	37	chr9	35094351	35094351	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcccatgaagactacacGccttcctgcagggacatgaa	8	13	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35094351	A	A	35094351	3	1	37	1	0	0	0	0	1	0	0	0	11989	1087	38	4	2788	4	PIGO	9	35094351	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	15573347	35094351	106119080	324	46996											
UNC13B	10497	broad.mit.edu	37	chr9	35401853	35401853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaatatgtgtagagctGctttgaatggctgttaactc	10	7	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35401853	T	T	35401853	1	4	37	0	1	0	0	0	0	0	0	0	17111	1334	46	3		3	UNC13B	9	35401853	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	307502	35401853	105811578	325	46997											
PAX5	5079	broad.mit.edu	37	chr9	36966731	36966731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgaatacctttgatgaGcaggagagaggaagggtgag	15	6	0	5			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36966731	A	A	36966731	1	1	37	0	1	0	0	0	0	0	0	0	11576	986	34	4		4	PAX5	9	36966731	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1564878	36966731	104246700	326	46998											
C9orf95	54981	broad.mit.edu	37	chr9	77697980	77697980	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctcagtatcttaaagagCtgtttgtagcaaaattactc	6	8	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77697980	T	T	77697980	1	4	37	0	1	0	0	0	0	0	0	0	2533	812	28	4		4	C9orf95	9	77697980	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	40731249	77697980	63515451	327	46999											
C9orf102	375748	broad.mit.edu	37	chr9	98690876	98690876	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagaaaaatatttattgttCttggaattataagaaagaaa	7	1	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98690876	T	T	98690876	1	4	37	0	1	0	0	0	0	0	0	0	2471	928	32	4		4	C9orf102	9	98690876	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	20992896	98690876	42522555	328	47000											
BAAT	570	broad.mit.edu	37	chr9	104133326	104133326	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcaggctggcctttggagCactggcaactttattgttca	11	9	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104133326	T	T	104133326	3	4	37	1	0	0	0	0	1	0	0	0	1285	710	25	4	907	4	BAAT	9	104133326	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5442450	104133326	37080105	329	47001											
ROD1	9991	broad.mit.edu	37	chr9	114986001	114986001	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcccttgatttttaaaAtatacttgaatatcaaactc	2	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114986001	C	C	114986001	1	2	37	0	1	0	0	0	0	0	0	0	13630	116	4	5		5	ROD1	9	114986001	3'UTR	SNP	A	TCGA-17-Z003-01A-01W-0746-08	10852675	114986001	26227430	330	47002											
HSDL2	84263	broad.mit.edu	37	chr9	115203869	115203869	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttctcacagaggccttttCttttgcaccagaaagatttt	7	9	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115203869	G	G	115203869	1	3	37	0	1	0	0	0	0	0	0	0	7461	928	32	4		4	HSDL2	9	115203869	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	217868	115203869	26009562	331	47003											
ORM1	5004	broad.mit.edu	37	chr9	117092869	117092869	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacccggtgagagcccccAttccaatgcacccccatctc	7	19	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117092869	C	C	117092869	1	2	37	0	1	0	0	0	0	0	0	0	11361	232	8	5		5	ORM1	9	117092869	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1889000	117092869	24120562	332	47004											
ASTN2	23245	broad.mit.edu	37	chr9	119957753	119957753	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtggagaagggaggaagagGatgggataaaagcaggaaga	19	1	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119957753	T	T	119957753	1	4	37	0	1	0	0	0	0	0	0	0	1069	1189	41	3		3	ASTN2	9	119957753	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2864884	119957753	21255678	333	47005											
ASTN2	23245	broad.mit.edu	37	chr9	120006962	120006962	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatggatggatggaaggaCagaaggaaggagagaaggag	20	1	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120006962	T	T	120006962	1	4	37	0	1	0	0	0	0	0	0	0	1069	493	17	4		4	ASTN2	9	120006962	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	49209	120006962	21206469	334	47006											
DBC1	1620	broad.mit.edu	37	chr9	122004416	122004416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatgcgagctggtgcagaGcttcaacactttgagtggca	13	8	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122004416	A	A	122004416	3	1	37	1	0	0	0	0	1	0	0	0	4280	971	34	4	1817	4	DBC1	9	122004416	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1997454	122004416	19209015	335	47007											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123173549	123173549	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccacaggattcatacttaGgttggtcagactccaatgcc	9	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123173549	C	C	123173549	1	2	37	0	1	0	0	0	0	0	0	0	3176	1015	35	4		4	CDK5RAP2	9	123173549	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1169133	123173549	18039882	336	47008											
DENND1A	57706	broad.mit.edu	37	chr9	126164228	126164228	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattctgggtttacatctcaAtatcaacaggcctgtgaccc	7	11	3	1	rs138560936	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126164228	T	T	126164228	1	4	37	0	1	0	0	0	0	0	0	0	4466	116	4	5		5	DENND1A	9	126164228	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2990679	126164228	15049203	337	47009											
GAPVD1	26130	broad.mit.edu	37	chr9	128092250	128092250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattacaggtgtgagccacCgcgcccagccaggagatttt	13	11	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128092250	T	T	128092250	1	4	37	0	1	0	0	0	0	0	0	0	6301	667	23	4		4	GAPVD1	9	128092250	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1928022	128092250	13121181	338	47010											
CEL	1056	broad.mit.edu	37	chr9	135944036	135944036	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaggtacaagaacctgctAacctgctggctctcccaccc	10	15	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135944036	G	G	135944036	1	3	37	0	1	0	0	0	0	0	0	0	3239	377	13	5		5	CEL	9	135944036	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	7851786	135944036	5269395	339	47011											
FCN1	2219	broad.mit.edu	37	chr9	137802911	137802911	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcccaaggtcaccagggGagacagagccaggttctctc	14	12	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137802911	T	T	137802911	1	4	37	0	1	0	0	0	0	0	0	0	5848	1189	41	3		3	FCN1	9	137802911	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1858875	137802911	3410520	340	47012											
SEC16A	9919	broad.mit.edu	37	chr9	139353685	139353685	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggttgcgaactttaagaaTggcaaactgtagaggaagtg	13	4	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139353685	C	C	139353685	2	2	37	1	0	0	0	0	0	0	0	1	14099	1451	51	5		5	SEC16A	9	139353685	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1550774	139353685	1859746	341	47013											
ATP5C1	509	broad.mit.edu	37	chr10	7841882	7841882	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctttaataaattcaggcaAgacagatttagaaatcaaag	6	5	3	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7841882	G	G	7841882	1	3	37	0	1	0	0	0	0	0	0	0	1153	87	3	5		5	ATP5C1	10	7841882	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08		7841882	127692865	342	47014											
FRMD4A	55691	broad.mit.edu	37	chr10	13779741	13779741	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaattagcaggagattggTgagcctttaggctgcatggc	13	6	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13779741	A	A	13779741	1	1	37	0	1	0	0	0	0	0	0	0	6111	1711	59	5		5	FRMD4A	10	13779741	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5937859	13779741	121755006	343	47015											
CUBN	8029	broad.mit.edu	37	chr10	16911667	16911667	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagacatcttccagcctTttgctgtctgaaatgaatct	8	9	3	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16911667	A	A	16911667	3	1	37	1	0	0	0	0	1	0	0	0	4084	1841	64	5	1485	5	CUBN	10	16911667	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3131926	16911667	118623080	344	47016											
SLC39A12	221074	broad.mit.edu	37	chr10	18250465	18250465	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgttctggaactattttGctaagctttgtttcttttgt	8	5	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18250465	A	A	18250465	1	1	37	0	1	0	0	0	0	0	0	0	14729	1334	46	4		4	SLC39A12	10	18250465	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1338798	18250465	117284282	345	47017											
ARMC3	219681	broad.mit.edu	37	chr10	23322839	23322839	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgaaatggggacatcacAgaaggatcaggttgaagaga	13	7	2	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23322839	T	T	23322839	1	4	37	0	1	0	0	0	0	0	0	0	956	203	7	5		5	ARMC3	10	23322839	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5072374	23322839	112211908	346	47018											
GPR158	57512	broad.mit.edu	37	chr10	25770142	25770143	+	Intron	INS	-	T	T													acctttactggggcacagagINStgtcacccaagcagatttcc					rs147807917	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25770143	T	T	25770142	6	5	37	0	1	1	1	0	0	0	0	0	6728	1044	36	0		0	GPR158	10	25770142	Intron	INS	-	TCGA-17-Z003-01A-01W-0746-08	2447303	25770142	109764605	347	47019											
MAP3K8	1326	broad.mit.edu	37	chr10	30728325	30728325	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcatgattttaaaaaatgTaatcatcagtaagaagtact	7	4	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30728325	C	C	30728325	1	2	37	0	1	0	0	0	0	0	0	0	9348	1653	57	5		5	MAP3K8	10	30728325	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4958183	30728325	104806422	348	47020											
C10orf68	79741	broad.mit.edu	37	chr10	33000699	33000699	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattttatattattttaagtAaatctcaaaagaactttttt	2	3	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33000699	G	G	33000699	1	3	37	0	1	0	0	0	0	0	0	0	1624	377	13	5		5	C10orf68	10	33000699	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2272374	33000699	102534048	349	47021											
OR13A1	79290	broad.mit.edu	37	chr10	45799860	45799860	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatcaggtgactctccatcCacagcttcatgtgatttcag	7	12	4	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45799860	T	T	45799860	4	4	37	1	0	0	0	0	0	1	0	0	11027	595	21	4	979	4	OR13A1	10	45799860	Nonsense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	12799161	45799860	89734887	350	47022											
PCDH15	65217	broad.mit.edu	37	chr10	55570302	55570302	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattatcttacataataaaAttacagtaattacctcttcc	1	8	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55570302	T	T	55570302	1	4	37	0	1	0	0	0	0	0	0	0	11605	116	4	5		5	PCDH15	10	55570302	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	9770442	55570302	79964445	351	47023											
PCDH15	65217	broad.mit.edu	37	chr10	55582459	55582459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccacagttcttgaaacaGttggcaaagtggagaatgag	12	6	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55582459	T	T	55582459	3	4	37	1	0	0	0	0	1	0	0	0	11605	1029	36	3	2450	3	PCDH15	10	55582459	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	12157	55582459	79952288	352	47024											
PCDH15	65217	broad.mit.edu	37	chr10	55780296	55780296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaacgaggacaaaaagacaCgttttttgtttttgtttttt	7	4	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55780296	T	T	55780296	1	4	37	0	1	0	0	0	0	0	0	0	11605	551	19	4		4	PCDH15	10	55780296	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	197837	55780296	79754451	353	47025											
PCDH15	65217	broad.mit.edu	37	chr10	55943337	55943338	+	Missense_Mutation	DNP	CC	TA	TA													ctggctcactttcttgtacaCcatcaaatgctgttatcttt							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	55943338	TA	TA	55943337	3	4	37	1	0	0	0	0	1	0	0	0	11605	507	18	4	6113	4	PCDH15	10	55943337	Missense_Mutation	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	163041	55943337	79591410	354	47026											
ZWINT	11130	broad.mit.edu	37	chr10	58119319	58119319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataagcaagggagaaagacCaagagaagtctattttttct	10	5	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58119319	A	A	58119319	1	1	37	0	1	0	0	0	0	0	0	0	18378	609	21	2		2	ZWINT	10	58119319	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2175982	58119319	77415428	355	47027											
ANK3	288	broad.mit.edu	37	chr10	61847894	61847894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagggaaacaactttttGtgaacattacctggaggccc	10	9	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61847894	T	T	61847894	1	4	37	0	1	0	0	0	0	0	0	0	622	1392	48	3		3	ANK3	10	61847894	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3728575	61847894	73686853	356	47028											
CCAR1	55749	broad.mit.edu	37	chr10	70509455	70509455	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagattggtaggttattccCcacccattgttttcttgagt	8	8	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70509455	T	T	70509455	1	4	37	0	1	0	0	0	0	0	0	0	2756	638	22	4		4	CCAR1	10	70509455	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	8661561	70509455	65025292	357	47029											
COL13A1	1305	broad.mit.edu	37	chr10	71716657	71716657	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgtgggtgggccacatccTgatcagctgccaaaatgcgt	13	11	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71716657	C	C	71716657	1	2	37	0	1	0	0	0	0	0	0	0	3702	1595	55	5		5	COL13A1	10	71716657	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1207202	71716657	63818090	358	47030											
C10orf2	56652	broad.mit.edu	37	chr10	102753132	102753132	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaaggcccggctcaagaaGatcaaggatgacactggacc	11	11	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102753132	C	C	102753132	3	2	37	1	0	0	0	0	1	0	0	0	1608	933	33	4	1953	4	C10orf2	10	102753132	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	31036475	102753132	32781615	359	47031											
POLL	27343	broad.mit.edu	37	chr10	103343395	103343395	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccaggatctctatgattTtctcagccatccgcttccca	5	15	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103343395	G	G	103343395	3	3	37	1	0	0	0	0	1	0	0	0	12300	1841	64	5	808	5	POLL	10	103343395	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	590263	103343395	32191352	360	47032											
SORCS1	114815	broad.mit.edu	37	chr10	108439018	108439018	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggtattttcttacctgtCtccaggtgttccctgcatct	8	12	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108439018	A	A	108439018	3	1	37	1	0	0	0	0	1	0	0	0	15044	913	32	3	2064	3	SORCS1	10	108439018	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5095623	108439018	27095729	361	47033											
FANK1	92565	broad.mit.edu	37	chr10	127614990	127614990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagttccatcagaaggatGgatcccttgtgctacccatc	8	12	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127614990	A	A	127614990	1	1	37	0	1	0	0	0	0	0	0	0	5729	1363	47	4		4	FANK1	10	127614990	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	19175972	127614990	7919757	362	47034											
TCERG1L	256536	broad.mit.edu	37	chr10	132944790	132944790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggtgcctccagcttgcGtttgtggggcgggtcctcaa	15	11	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132944790	T	T	132944790	3	4	37	1	0	0	0	0	1	0	0	0	15808	1145	40	3	616	3	TCERG1L	10	132944790	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5329800	132944790	2589957	363	47035											
DEAF1	10522	broad.mit.edu	37	chr11	674761	674761	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcgggggtgggaccgcCagcgcaggcagggatgtcaa	20	9	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	674761	A	A	674761	2	1	37	1	0	0	0	0	0	0	0	1	4413	581	21	2		2	DEAF1	11	674761	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08		674761	134331755	364	47036											
IGF2	3481	broad.mit.edu	37	chr11	2161390	2161390	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgagctcaccggggtgCgtctaagtagctcgcctttg	14	12	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2161390	A	A	2161390	1	1	37	0	1	0	0	0	0	0	0	0	7642	768	27	3		3	IGF2	11	2161390	5'Flank	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1486629	2161390	132845126	365	47037											
APBB1	322	broad.mit.edu	37	chr11	6424580	6424580	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgggaaggtcaacgtccCctcctcaggttccttcagtc	10	14	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6424580	T	T	6424580	3	4	37	1	0	0	0	0	1	0	0	0	761	623	22	4	1163	4	APBB1	11	6424580	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4263190	6424580	128581936	366	47038											
OR2D3	120775	broad.mit.edu	37	chr11	6943218	6943219	+	Missense_Mutation	DNP	GG	TT	TT													gagaaagtgcttctctcataGgcagtgacctctgagtctga							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6943219	TT	TT	6943218	3	4	37	1	0	0	0	0	1	0	0	0	11089	1000	35	2	988	2	OR2D3	11	6943218	Missense_Mutation	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	518638	6943218	128063298	367	47039											
ABCC8	6833	broad.mit.edu	37	chr11	17414502	17414502	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcaggggtatgggcagGgtccgaatgtgggatggcac	19	8	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17414502	T	T	17414502	1	4	37	0	1	0	0	0	0	0	0	0	58	1247	43	2		2	ABCC8	11	17414502	3'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	10471284	17414502	117592014	368	47040											
SAAL1	113174	broad.mit.edu	37	chr11	18128286	18128286	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaatactaaaatatcacGtcacctgatccacatgcgtg	8	10	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18128286	A	A	18128286	1	1	37	0	1	0	0	0	0	0	0	0	13912	1160	40	4		4	SAAL1	11	18128286	5'Flank	SNP	G	TCGA-17-Z003-01A-01W-0746-08	713784	18128286	116878230	369	47041											
SLC6A5	9152	broad.mit.edu	37	chr11	20676459	20676459	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgatcctgtttttcctctCtgcctcctcctaatgttttc	4	14	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20676459	G	G	20676459	1	3	37	0	1	0	0	0	0	0	0	0	14801	928	32	4		4	SLC6A5	11	20676459	3'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2548173	20676459	114330057	370	47042											
ANO3	63982	broad.mit.edu	37	chr11	26669265	26669265	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcttaccaggtatctggcTtggaattctcgaaggaatcg	10	9	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26669265	A	A	26669265	3	1	37	1	0	0	0	0	1	0	0	0	698	1609	56	5	2532	5	ANO3	11	26669265	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5992806	26669265	108337251	371	47043											
RAG2	5897	broad.mit.edu	37	chr11	36614774	36614774	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgttgcttccaaaccatatCttgctgtgcttaatgtctgg	8	9	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36614774	T	T	36614774	2	4	37	1	0	0	0	0	0	0	0	1	13113	912	32	4		4	RAG2	11	36614774	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9945509	36614774	98391742	372	47044											
LRRC4C	57689	broad.mit.edu	37	chr11	40137259	40137259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacctcaagttggacagaCcttcaaaggcaccttctgag	8	11	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40137259	A	A	40137259	3	1	37	1	0	0	0	0	1	0	0	0	9095	507	18	3	1342	3	LRRC4C	11	40137259	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3522485	40137259	94869257	373	47045											
LRRC4C	57689	broad.mit.edu	37	chr11	40137872	40137872	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctggtgttggtccttctgGaattcaaacagtctgcaaaa	9	8	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40137872	T	T	40137872	1	4	37	0	1	0	0	0	0	0	0	0	9095	1189	41	3		3	LRRC4C	11	40137872	5'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	613	40137872	94868644	374	47046											
MADD	8567	broad.mit.edu	37	chr11	47345285	47345285	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtatgagcgctggtggtacGagaagctcatcaacatgacc	12	9	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47345285	A	A	47345285	3	1	37	1	0	0	0	0	1	0	0	0	9240	1059	37	4	4559	4	MADD	11	47345285	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	7207413	47345285	87661231	375	47047											
OR4A16	81327	broad.mit.edu	37	chr11	55110813	55110813	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacctcctcatttgggtgaCtactattggcagcccctcct	7	14	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55110813	T	T	55110813	3	4	37	1	0	0	0	0	1	0	0	0	11135	565	20	4	139	4	OR4A16	11	55110813	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	7765528	55110813	79895703	376	47048											
OR4A15	81328	broad.mit.edu	37	chr11	55135507	55135507	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagggctcacacagaaccctGaggggcaaaaggttttattt	11	8	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135507	A	A	55135507	3	1	37	1	0	0	0	0	1	0	0	0	11134	1291	45	4	150	4	OR4A15	11	55135507	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	24694	55135507	79871009	377	47049											
OR5T3	390154	broad.mit.edu	37	chr11	56019977	56019977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttatcattcttggatgCttgctattctacagttgtca	7	7	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56019977	A	A	56019977	3	1	37	1	0	0	0	0	1	0	0	0	11277	797	28	3	304	3	OR5T3	11	56019977	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	884470	56019977	78986539	378	47050											
OR5M3	219482	broad.mit.edu	37	chr11	56237921	56237921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaacttgccattctcgaCggctcgttagccccaaaaga	9	12	1	2	rs142752109		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56237921	A	A	56237921	3	1	37	1	0	0	0	0	1	0	0	0	11269	536	19	3	872	3	OR5M3	11	56237921	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	217944	56237921	78768595	379	47051											
OR5AP2	338675	broad.mit.edu	37	chr11	56409469	56409469	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggaggtagctattagCaaaaagcaaattctcccaga	9	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56409469	G	G	56409469	3	3	37	1	0	0	0	0	1	0	0	0	11238	709	25	4	507	4	OR5AP2	11	56409469	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	171548	56409469	78597047	380	47052											
OR1S1	219959	broad.mit.edu	37	chr11	57982229	57982229	+	Frame_Shift_Del	DEL	A	-	-													gtaggaatatgaagacttttAgttcctttcttcagatcggc					rs1966836	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57982229	-	-	57982229	7	5	37	1	0	1	0	1	0	0	0	0	11066	420	15	0	15	0	OR1S1	11	57982229	Frame_Shift_Del	DEL	A	TCGA-17-Z003-01A-01W-0746-08	1572760	57982229	77024287	381	47053											
GIF	2694	broad.mit.edu	37	chr11	59599306	59599306	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgattaacatctcacttTaggtcagggaataagcggta	9	6	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59599306	C	C	59599306	1	2	37	0	1	0	0	0	0	0	0	0	6440	1769	61	5		5	GIF	11	59599306	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1617077	59599306	75407210	382	47054											
MS4A6A	64231	broad.mit.edu	37	chr11	59939618	59939618	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaactttctgattaatattTctcccttttttcttaagaag	3	8	4	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59939618	C	C	59939618	1	2	37	0	1	0	0	0	0	0	0	0	9958	1798	62	5		5	MS4A6A	11	59939618	3'UTR	SNP	T	TCGA-17-Z003-01A-01W-0746-08	340312	59939618	75066898	383	47055											
UBXN1	51035	broad.mit.edu	37	chr11	62446114	62446114	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggttagctttgaggctgCccctcccgccagcccccaat	11	16	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62446114	G	G	62446114	1	3	37	0	1	0	0	0	0	0	0	0	17037	754	26	4		4	UBXN1	11	62446114	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2506496	62446114	72560402	384	47056											
ZBTB3	79842	broad.mit.edu	37	chr11	62521549	62521549	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcatctccctcacgcattCcaggggctaaggactaccag	9	14	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62521549	T	T	62521549	1	4	37	0	1	0	0	0	0	0	0	0	17660	870	30	4		4	ZBTB3	11	62521549	5'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	75435	62521549	72484967	385	47057											
PLCB3	5331	broad.mit.edu	37	chr11	64029061	64029061	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcacccctaagagaggaacAaatgcttcgagatgtcgtcc	9	12	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64029061	T	T	64029061	4	4	37	1	0	0	0	0	0	1	0	0	12124	131	5	5	1899	5	PLCB3	11	64029061	Nonsense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1507512	64029061	70977455	386	47058											
UCP2	7351	broad.mit.edu	37	chr11	73687826	73687826	+	Intron	DEL	C	-	-													cctgggtgagaccagagtatCggggaggaggaaaaggggaa							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73687826	-	-	73687826	6	5	37	0	1	1	0	1	0	0	0	0	17057	899	31	0		0	UCP2	11	73687826	Intron	DEL	C	TCGA-17-Z003-01A-01W-0746-08	9658765	73687826	61318690	387	47059											
NARS2	79731	broad.mit.edu	37	chr11	78177092	78177092	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaagaaatgaccaaaagagGagacagaggtgaaatataca	11	4	0	6			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78177092	A	A	78177092	1	1	37	0	1	0	0	0	0	0	0	0	10265	1189	41	4		4	NARS2	11	78177092	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4489266	78177092	56829424	388	47060											
CARD16	114769	broad.mit.edu	37	chr11	104915140	104915140	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgctgagagtcccagcgtctCtgccaggtaactgtcttctt	10	12	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104915140	G	G	104915140	3	3	37	1	0	0	0	0	1	0	0	0	2673	922	32	4	372	4	CARD16	11	104915140	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	26738048	104915140	30091376	389	47061											
CARD16	114769	broad.mit.edu	37	chr11	104915311	104915311	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacccttgtctgtaataattCatccagtaagccatttattg	5	10	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104915311	T	T	104915311	3	4	37	1	0	0	0	0	1	0	0	0	2673	835	29	4	543	4	CARD16	11	104915311	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	171	104915311	30091205	390	47062											
GRIA4	2893	broad.mit.edu	37	chr11	105623720	105623720	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttcagtctgttcccagtaTtctagaggagtatttgccat	9	8	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105623720	A	A	105623720	4	1	37	1	0	0	0	0	0	1	0	0	6836	1500	52	5	271	5	GRIA4	11	105623720	Nonsense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	708409	105623720	29382796	391	47063											
GRIA4	2893	broad.mit.edu	37	chr11	105797709	105797709	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaatgtttatcattttgAaattcaggcaatttttccaa	5	5	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105797709	C	C	105797709	1	2	37	0	1	0	0	0	0	0	0	0	6836	261	9	5		5	GRIA4	11	105797709	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	173989	105797709	29208807	392	47064											
FAM55B	120406	broad.mit.edu	37	chr11	114569284	114569284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgataggatcatcttcaCtggcctgtttgccaacagaa	9	9	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114569284	A	A	114569284	3	1	37	1	0	0	0	0	1	0	0	0	5636	565	20	3	660	3	FAM55B	11	114569284	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	8771575	114569284	20437232	393	47065											
NLRX1	79671	broad.mit.edu	37	chr11	119054062	119054062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatagccggggtgccaccCttaatccttggcgcaaggcc	12	13	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119054062	A	A	119054062	3	1	37	1	0	0	0	0	1	0	0	0	10580	681	24	2	2876	2	NLRX1	11	119054062	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4484778	119054062	15952454	394	47066											
OR8B4	283162	broad.mit.edu	37	chr11	124294638	124294638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaattaaggtgatcaagcCcaagttgcccaccacagtga	8	13	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124294638	A	A	124294638	3	1	37	1	0	0	0	0	1	0	0	0	11323	623	22	2	801	2	OR8B4	11	124294638	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5240576	124294638	10711878	395	47067											
SIAE	54414	broad.mit.edu	37	chr11	124524960	124524960	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggagccgtgaagtagctGaggctaaagaatattgccca	13	7	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124524960	A	A	124524960	1	1	37	0	1	0	0	0	0	0	0	0	14411	1305	45	4		4	SIAE	11	124524960	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	230322	124524960	10481556	396	47068											
ROBO4	54538	broad.mit.edu	37	chr11	124765507	124765507	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcctctgcccacggagcTccctggcctcccggggcagt	12	18	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124765507	C	C	124765507	2	2	37	1	0	0	0	0	0	0	0	1	13627	1538	54	5		5	ROBO4	11	124765507	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	240547	124765507	10241009	397	47069											
HEPACAM	220296	broad.mit.edu	37	chr11	124789919	124789919	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgatgttagtgtgattaggGagtctgccctttttctgtgc	12	6	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124789919	T	T	124789919	1	4	37	0	1	0	0	0	0	0	0	0	7119	1189	41	3		3	HEPACAM	11	124789919	3'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	24412	124789919	10216597	398	47070											
STT3A	3703	broad.mit.edu	37	chr11	125467027	125467027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatccgtgagtacctttGcttgatctggtattatttcc	8	8	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125467027	T	T	125467027	1	4	37	0	1	0	0	0	0	0	0	0	15451	1334	46	3		3	STT3A	11	125467027	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	677108	125467027	9539489	399	47071											
ARHGAP32	9743	broad.mit.edu	37	chr11	128839487	128839487	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctgctcctcaggctgCtctgcttctgaggcagggat	12	13	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128839487	T	T	128839487	3	4	37	1	0	0	0	0	1	0	0	0	883	797	28	4	688	4	ARHGAP32	11	128839487	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3372460	128839487	6167029	400	47072											
ARHGAP32	9743	broad.mit.edu	37	chr11	128848784	128848784	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagctacccacaggagacTttttcatcttattttgaggc	8	11	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128848784	A	A	128848784	3	1	37	1	0	0	0	0	1	0	0	0	883	1609	56	5	4322	5	ARHGAP32	11	128848784	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	9297	128848784	6157732	401	47073											
NTM	50863	broad.mit.edu	37	chr11	132180160	132180160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcctatcccacccctacCcccatctccaggagaaactt	3	19	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132180160	A	A	132180160	1	1	37	0	1	0	0	0	0	0	0	0	10794	638	22	2		2	NTM	11	132180160	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3331376	132180160	2826356	402	47074											
ERC1	23085	broad.mit.edu	37	chr12	1553905	1553905	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatgagctgcagaagatgAcccgggggcaggtgagcctc	16	9	0	6			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1553905	C	C	1553905	3	2	37	1	0	0	0	0	1	0	0	0	5252	275	10	5	3268	5	ERC1	12	1553905	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08		1553905	132297990	403	47075											
CACNA2D4	93589	broad.mit.edu	37	chr12	2024144	2024144	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtatacacacacgtacacGcacaaatacagaaacacacg	6	13	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2024144	C	C	2024144	1	2	37	0	1	0	0	0	0	0	0	0	2577	1102	38	4		4	CACNA2D4	12	2024144	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	470239	2024144	131827751	404	47076											
RAD51AP1	10635	broad.mit.edu	37	chr12	4654861	4654861	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatactccatagcacttttgAgcagcttgaataggacttta	7	8	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4654861	T	T	4654861	1	4	37	0	1	0	0	0	0	0	0	0	13094	319	11	5		5	RAD51AP1	12	4654861	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2630717	4654861	129197034	405	47077											
ENO2	2026	broad.mit.edu	37	chr12	7026685	7026685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggagactacagatggagGcaggagctagaaaggagaag	16	4	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7026685	T	T	7026685	1	4	37	0	1	0	0	0	0	0	0	0	5164	1218	42	3		3	ENO2	12	7026685	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2371824	7026685	126825210	406	47078											
A2M	2	broad.mit.edu	37	chr12	9246133	9246133	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccgtgtgaggctcttcaAcatgcaccaggcgtgcatgg	12	12	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9246133	T	T	9246133	3	4	37	1	0	0	0	0	1	0	0	0	4	43	2	5	2332	5	A2M	12	9246133	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2219448	9246133	124605762	407	47079											
CLEC1B	51266	broad.mit.edu	37	chr12	10150761	10150761	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttggcaactatctgtAggacaactgtagaagtgata	9	7	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10150761	T	T	10150761	1	4	37	0	1	0	0	0	0	0	0	0	3538	435	15	5		5	CLEC1B	12	10150761	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	904628	10150761	123701134	408	47080											
CSDA	8531	broad.mit.edu	37	chr12	10868261	10868261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacagtactatgtgccagCactttgatacccaaccacaa	6	13	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10868261	A	A	10868261	1	1	37	0	1	0	0	0	0	0	0	0	3961	725	25	3		3	CSDA	12	10868261	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	717500	10868261	122983634	409	47081											
ERP27	121506	broad.mit.edu	37	chr12	15091206	15091206	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccagacttccctactctcTaccaggcaaaatgcacttat	5	14	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15091206	C	C	15091206	1	2	37	0	1	0	0	0	0	0	0	0	5283	1537	53	5		5	ERP27	12	15091206	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4222945	15091206	118760689	410	47082											
PDE3A	5139	broad.mit.edu	37	chr12	20769352	20769352	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgctggtttaatgtctctTagagaagttacttgccaaaa	8	8	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20769352	C	C	20769352	1	2	37	0	1	0	0	0	0	0	0	0	11731	1769	61	5		5	PDE3A	12	20769352	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5678146	20769352	113082543	411	47083											
SLCO1B1	10599	broad.mit.edu	37	chr12	21350115	21350115	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaatattaccaaaaaTgtgactggtaagtatttaac	7	4	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21350115	C	C	21350115	2	2	37	1	0	0	0	0	0	0	0	1	14837	1461	51	5		5	SLCO1B1	12	21350115	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	580763	21350115	112501780	412	47084											
LRMP	4033	broad.mit.edu	37	chr12	25248781	25248781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattctctgtttcttcatGgcttaatcctggttgaccat	7	10	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25248781	T	T	25248781	1	4	37	0	1	0	0	0	0	0	0	0	9037	1363	47	2		2	LRMP	12	25248781	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3898666	25248781	108603114	413	47085											
ALG10B	144245	broad.mit.edu	37	chr12	38714474	38714474	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctcaactattctactTtttttcatttactctctttt	0	10	4	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38714474	G	G	38714474	3	3	37	1	0	0	0	0	1	0	0	0	512	1841	64	5	891	5	ALG10B	12	38714474	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	13465693	38714474	95137421	414	47086											
KIF21A	55605	broad.mit.edu	37	chr12	39750632	39750632	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttacagaacatgaactatAcctgagatcttcgatttctt	6	8	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39750632	G	G	39750632	5	3	37	1	0	0	0	0	0	0	1	0	8358	405	14	5	3669	5	KIF21A	12	39750632	Splice_Site	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1036158	39750632	94101263	415	47087											
LRRK2	120892	broad.mit.edu	37	chr12	40714830	40714830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccatagtgtccttttgcCtttagtttgtctgaccacag	7	10	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40714830	A	A	40714830	1	1	37	0	1	0	0	0	0	0	0	0	9120	696	24	2		2	LRRK2	12	40714830	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	964198	40714830	93137065	416	47088											
CNTN1	1272	broad.mit.edu	37	chr12	41333204	41333204	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgctaaaggtggaagggtGataattgaatgcaaacctaa	12	5	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41333204	C	C	41333204	2	2	37	1	0	0	0	0	0	0	0	1	3672	1277	45	4		4	CNTN1	12	41333204	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	618374	41333204	92518691	417	47089											
PDZRN4	29951	broad.mit.edu	37	chr12	41903696	41903696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgctgatgcagacagaaCagaagactttgaatatgagg	12	7	0	7			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41903696	A	A	41903696	3	1	37	1	0	0	0	0	1	0	0	0	11804	478	17	3	1275	3	PDZRN4	12	41903696	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	570492	41903696	91948199	418	47090											
ADAMTS20	80070	broad.mit.edu	37	chr12	43847848	43847848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttacacatagcccatgaCggcaatgctataaaaataat	6	8	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43847848	A	A	43847848	3	1	37	1	0	0	0	0	1	0	0	0	266	536	19	3	4221	3	ADAMTS20	12	43847848	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1944152	43847848	90004047	419	47091											
ARID2	196528	broad.mit.edu	37	chr12	46233323	46233323	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtgtggttacgagtgtAtaagatttgatcctaagaat	10	4	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46233323	G	G	46233323	1	3	37	0	1	0	0	0	0	0	0	0	917	464	16	5		5	ARID2	12	46233323	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2385475	46233323	87618572	420	47092											
COL2A1	1280	broad.mit.edu	37	chr12	48375180	48375180	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaggtccaacttctccCtgagggtggggaagggagga	17	9	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48375180	T	T	48375180	5	4	37	1	0	0	0	0	0	0	1	0	3719	695	24	4	2126	4	COL2A1	12	48375180	Splice_Site	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2141857	48375180	85476715	421	47093											
TUBA1A	7846	broad.mit.edu	37	chr12	49578784	49578784	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcagcacctttgtgacGttttaactttagtattcctc	6	9	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49578784	C	C	49578784	1	2	37	0	1	0	0	0	0	0	0	0	16869	1160	40	4		4	TUBA1A	12	49578784	3'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1203604	49578784	84273111	422	47094											
OR6C4	341418	broad.mit.edu	37	chr12	55945351	55945351	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccgagttttacctcctggCctccatgtcttatgatcgtt	7	12	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55945351	G	G	55945351	3	3	37	1	0	0	0	0	1	0	0	0	11287	739	26	4	343	4	OR6C4	12	55945351	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6366567	55945351	77906544	423	47095											
ERBB3	2065	broad.mit.edu	37	chr12	56493860	56493860	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttgcaccctgagccctcaCaaaccctacagatacccaga	5	17	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56493860	G	G	56493860	1	3	37	0	1	0	0	0	0	0	0	0	5250	493	17	4		4	ERBB3	12	56493860	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	548509	56493860	77358035	424	47096											
RDH16	8608	broad.mit.edu	37	chr12	57379839	57379839	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacacagagggctgaggtAggcagggaagccctcaggca	16	9	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57379839	T	T	57379839	1	4	37	0	1	0	0	0	0	0	0	0	13302	435	15	5		5	RDH16	12	57379839	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	885979	57379839	76472056	425	47097											
USP15	9958	broad.mit.edu	37	chr12	62783321	62783321	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttctggggttgaagtatAtaagttggtatttagtttct	11	2	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62783321	G	G	62783321	1	3	37	0	1	0	0	0	0	0	0	0	17172	464	16	5		5	USP15	12	62783321	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5403482	62783321	71068574	426	47098											
NUP107	57122	broad.mit.edu	37	chr12	69096537	69096537	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacagaatacagtctgcattAgaagaggaaagtgtattcgc	11	6	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69096537	T	T	69096537	3	4	37	1	0	0	0	0	1	0	0	0	10848	417	15	5	732	5	NUP107	12	69096537	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	6313216	69096537	64755358	427	47099											
LGR5	8549	broad.mit.edu	37	chr12	71898227	71898227	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccatgatgttgtggggaaTgttggagaaaaggaattaat	14	3	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71898227	C	C	71898227	1	2	37	0	1	0	0	0	0	0	0	0	8829	1479	51	5		5	LGR5	12	71898227	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2801690	71898227	61953668	428	47100											
NAV3	89795	broad.mit.edu	37	chr12	78444689	78444689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggagatgctccctccctgGgtgctggctatcctcgcagt	13	14	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78444689	T	T	78444689	3	4	37	1	0	0	0	0	1	0	0	0	10279	1232	43	2	2320	2	NAV3	12	78444689	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6546462	78444689	55407206	429	47101											
NAV3	89795	broad.mit.edu	37	chr12	78583739	78583739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtagaacaataaatcatGctatttttttgtttcttctt	4	5	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78583739	T	T	78583739	1	4	37	0	1	0	0	0	0	0	0	0	10279	1334	46	3		3	NAV3	12	78583739	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	139050	78583739	55268156	430	47102											
ACSS3	79611	broad.mit.edu	37	chr12	81610622	81610622	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagagtgtgcatgtactcaAgaaacattatgattccaagt	9	6	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81610622	G	G	81610622	1	3	37	0	1	0	0	0	0	0	0	0	190	87	3	5		5	ACSS3	12	81610622	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3026883	81610622	52241273	431	47103											
PPFIA2	8499	broad.mit.edu	37	chr12	81719546	81719546	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaagagggaaaaatccCcaaacctactttttctttag	6	8	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81719546	T	T	81719546	1	4	37	0	1	0	0	0	0	0	0	0	12406	638	22	4		4	PPFIA2	12	81719546	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	108924	81719546	52132349	432	47104											
STAB2	55576	broad.mit.edu	37	chr12	104031840	104031840	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccaccctcatgctcattgTacgtacctgggaccaaatcg	8	14	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104031840	A	A	104031840	4	1	37	1	0	0	0	0	0	1	0	0	15356	1644	57	5	786	5	STAB2	12	104031840	Nonsense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	22312294	104031840	29820055	433	47105											
STAB2	55576	broad.mit.edu	37	chr12	104049007	104049007	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattttatttcctgattttTaagcaaaatgtctcttttta	3	5	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104049007	C	C	104049007	1	2	37	0	1	0	0	0	0	0	0	0	15356	1769	61	5		5	STAB2	12	104049007	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	17167	104049007	29802888	434	47106											
STAB2	55576	broad.mit.edu	37	chr12	104049364	104049364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctttctccagaggtacCgtattctgcttgctctgatg	8	13	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104049364	A	A	104049364	1	1	37	0	1	0	0	0	0	0	0	0	15356	667	23	1		1	STAB2	12	104049364	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	357	104049364	29802531	435	47107											
NUAK1	9891	broad.mit.edu	37	chr12	106480501	106480501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaagctgcgggccaggCgcagccataccttgtgacaa	13	13	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106480501	A	A	106480501	1	1	37	0	1	0	0	0	0	0	0	0	10807	783	27	3		3	NUAK1	12	106480501	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2431137	106480501	27371394	436	47108											
ASCL4	121549	broad.mit.edu	37	chr12	108169129	108169129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccctgcgtctggacgccgCgtgctgggagtgggcgcgca	18	14	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108169129	A	A	108169129	3	1	37	1	0	0	0	0	1	0	0	0	1040	768	27	3	139	3	ASCL4	12	108169129	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1688628	108169129	25682766	437	47109											
MSI1	4440	broad.mit.edu	37	chr12	120791215	120791215	+	Intron	SNP	C	T	T													gggggcagtgtcagatggctCatccacagggcggatcctga							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120791215	T	T	120791215	1	4	37	0	1	0	0	0	0	0	0	0	9969	841	29	4		4	MSI1	12	120791215	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	12622086	120791215	13060680	438	47110	233	2									
MSI1	4440	broad.mit.edu	37	chr12	120791218	120791218	+	Intron	SNP	C	T	T													ggcagtgtcagatggctcatCcacagggcggatcctgatca							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120791218	T	T	120791218	1	4	37	0	1	0	0	0	0	0	0	0	9969	870	30	4		4	MSI1	12	120791218	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3	120791218	13060677	439	47111	233	2									
MSI1	4440	broad.mit.edu	37	chr12	120791548	120791548	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctccagccacattggcttCcttgctgtttttcagctttg	8	12	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120791548	T	T	120791548	1	4	37	0	1	0	0	0	0	0	0	0	9969	870	30	4		4	MSI1	12	120791548	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	330	120791548	13060347	440	47112											
GLT1D1	144423	broad.mit.edu	37	chr12	129360407	129360407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtagcagcaacctgttaCatattaacattttcccctca	4	12	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129360407	A	A	129360407	1	1	37	0	1	0	0	0	0	0	0	0	6529	493	17	3		3	GLT1D1	12	129360407	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	8568859	129360407	4491488	441	47113											
GLT1D1	144423	broad.mit.edu	37	chr12	129467672	129467672	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacctgctctctgacacaCagctctgggtgcacactcag	9	15	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129467672	A	A	129467672	1	1	37	0	1	0	0	0	0	0	0	0	6529	493	17	3		3	GLT1D1	12	129467672	3'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	107265	129467672	4384223	442	47114											
PIWIL1	9271	broad.mit.edu	37	chr12	130855618	130855618	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagagatgaggttactgTagtaacttacagtgaagagt	13	3	0	5			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130855618	C	C	130855618	1	2	37	0	1	0	0	0	0	0	0	0	12052	1653	57	5		5	PIWIL1	12	130855618	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1387946	130855618	2996277	443	47115											
RIMBP2	23504	broad.mit.edu	37	chr12	131187568	131187568	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaatttattcatttcagAaaaatgctgctgctactcag	6	9	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131187568	C	C	131187568	1	2	37	0	1	0	0	0	0	0	0	0	13472	261	9	5		5	RIMBP2	12	131187568	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	331950	131187568	2664327	444	47116											
GOLGA3	2802	broad.mit.edu	37	chr12	133381309	133381309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccagcctcacctgtgttGtccttgctgagcatgctcct	11	14	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133381309	T	T	133381309	3	4	37	1	0	0	0	0	1	0	0	0	6618	1368	48	3	3116	3	GOLGA3	12	133381309	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2193741	133381309	470586	445	47117											
ZNF140	7699	broad.mit.edu	37	chr12	133683010	133683010	+	Frame_Shift_Del	DEL	A	-	-													cgaagagtcacactggagagAaaccctatgcgtgtgctgaa							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133683010	-	-	133683010	7	5	37	1	0	1	0	1	0	0	0	0	17855	247	9	0	1161	0	ZNF140	12	133683010	Frame_Shift_Del	DEL	A	TCGA-17-Z003-01A-01W-0746-08	301701	133683010	168885	446	47118											
ATP12A	479	broad.mit.edu	37	chr13	25263343	25263343	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggagagctctagccccaGggcccggctgcttcccactg	13	16	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25263343	A	A	25263343	1	1	37	0	1	0	0	0	0	0	0	0	1126	1015	35	4		4	ATP12A	13	25263343	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08		25263343	89906535	447	47119											
PABPC3	5042	broad.mit.edu	37	chr13	25671839	25671839	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctacccctgctgtgcgCacggttccacggtataaata	10	13	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25671839	T	T	25671839	2	4	37	1	0	0	0	0	0	0	0	1	11459	697	25	4		4	PABPC3	13	25671839	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	408496	25671839	89498039	448	47120											
MTMR6	9107	broad.mit.edu	37	chr13	25840012	25840012	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttcccttgctccggaacTtggaactaccaacaattatt	5	12	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25840012	G	G	25840012	3	3	37	1	0	0	0	0	1	0	0	0	10041	1609	56	5	1369	5	MTMR6	13	25840012	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	168173	25840012	89329866	449	47121											
FRY	10129	broad.mit.edu	37	chr13	32786357	32786357	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaaatctttccctggaatTacttgagacttgagcttgac	9	8	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32786357	G	G	32786357	1	3	37	0	1	0	0	0	0	0	0	0	6123	1769	61	5		5	FRY	13	32786357	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	6946345	32786357	82383521	450	47122											
SCEL	8796	broad.mit.edu	37	chr13	78176737	78176737	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgattatacagatttcAgagaaaattgtactgtaacc	6	6	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78176737	C	C	78176737	1	2	37	0	1	0	0	0	0	0	0	0	14000	203	7	5		5	SCEL	13	78176737	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	45390380	78176737	36993141	451	47123											
CLYBL	171425	broad.mit.edu	37	chr13	100518543	100518543	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attctctacgcccggcaaaaGattgttgtcatagcgaaagc	9	10	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100518543	C	C	100518543	3	2	37	1	0	0	0	0	1	0	0	0	3605	933	33	4	706	4	CLYBL	13	100518543	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	22341806	100518543	14651335	452	47124											
FGF14	2259	broad.mit.edu	37	chr13	102915627	102915627	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttaaaaagcagattttaTaggatatttctttgagcttt	6	3	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102915627	C	C	102915627	1	2	37	0	1	0	0	0	0	0	0	0	5900	1421	49	5		5	FGF14	13	102915627	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2397084	102915627	12254251	453	47125											
TUBGCP3	10426	broad.mit.edu	37	chr13	113208249	113208249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtggaccctgaaagttgaCtctcaaagctgctttacttg	10	9	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113208249	T	T	113208249	1	4	37	0	1	0	0	0	0	0	0	0	16893	580	20	4		4	TUBGCP3	13	113208249	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	10292622	113208249	1961629	454	47126											
OR4N2	390429	broad.mit.edu	37	chr14	20296219	20296219	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatggtcttcaacagtggCctgatgacactcctgtgctt	10	11	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20296219	T	T	20296219	2	4	37	1	0	0	0	0	0	0	0	1	11171	726	26	4		4	OR4N2	14	20296219	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08		20296219	87053321	455	47127											
IL25	64806	broad.mit.edu	37	chr14	23842337	23842337	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggtgcagatgagggagCgacccagattaggtgaggac	19	6	0	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23842337	T	T	23842337	4	4	37	1	0	0	0	0	0	1	0	0	7748	760	27	4	25	4	IL25	14	23842337	Nonsense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3546118	23842337	83507203	456	47128											
MYH7	4625	broad.mit.edu	37	chr14	23884965	23884965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctgcagcaggttgttgCgccgctccacgatggcgatg	14	13	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23884965	A	A	23884965	3	1	37	1	0	0	0	0	1	0	0	0	10133	768	27	3	801	3	MYH7	14	23884965	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	42628	23884965	83464575	457	47129											
MDGA2	161357	broad.mit.edu	37	chr14	47530405	47530405	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgatctgttaaacttcaatCattctaaatgtgaacatctt	4	7	5	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47530405	G	G	47530405	1	3	37	0	1	0	0	0	0	0	0	0	9500	841	29	4		4	MDGA2	14	47530405	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	23645440	47530405	59819135	458	47130											
MDGA2	161357	broad.mit.edu	37	chr14	47849045	47849045	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacttcacaaggatatccagGaactgaactcagctctgcac	7	12	3	1	rs148950801	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47849045	A	A	47849045	1	1	37	0	1	0	0	0	0	0	0	0	9500	1189	41	4		4	MDGA2	14	47849045	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	318640	47849045	59500495	459	47131											
NID2	22795	broad.mit.edu	37	chr14	52505684	52505684	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtagtctctggaacttgTagaggtcacagctgcaacaa	11	8	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52505684	C	C	52505684	3	2	37	1	0	0	0	0	1	0	0	0	10510	1638	57	5	2145	5	NID2	14	52505684	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4656639	52505684	54843856	460	47132											
DAAM1	23002	broad.mit.edu	37	chr14	59805210	59805210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatctcttcgttatccaGggttttgtttttgtttttgt	8	5	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59805210	T	T	59805210	1	4	37	0	1	0	0	0	0	0	0	0	4248	1015	35	2		2	DAAM1	14	59805210	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	7299526	59805210	47544330	461	47133											
KCNH5	27133	broad.mit.edu	37	chr14	63316464	63316464	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgggacctgatagagtttTaggaagtcccgtacattatt	10	6	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63316464	C	C	63316464	2	2	37	1	0	0	0	0	0	0	0	1	8105	1741	61	5		5	KCNH5	14	63316464	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3511254	63316464	44033076	462	47134											
YLPM1	56252	broad.mit.edu	37	chr14	75276211	75276211	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaataccaccacctccAcctcctccacctctacctcc	1	24	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75276211	T	T	75276211	2	4	37	1	0	0	0	0	0	0	0	1	17613	146	6	5		5	YLPM1	14	75276211	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	11959747	75276211	32073329	463	47135											
KCNK10	54207	broad.mit.edu	37	chr14	88652311	88652311	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagcaaagacagagcgcttCtcgggggacagcatgtccag	14	11	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88652311	A	A	88652311	3	1	37	1	0	0	0	0	1	0	0	0	8129	912	32	3	435	3	KCNK10	14	88652311	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	13376100	88652311	18697229	464	47136											
CATSPERB	79820	broad.mit.edu	37	chr14	92070853	92070853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattacattatggccttcccCagcagcttccaaggcagcct	7	14	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92070853	T	T	92070853	1	4	37	0	1	0	0	0	0	0	0	0	2717	609	21	4		4	CATSPERB	14	92070853	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	3418542	92070853	15278687	465	47137											
DYNC1H1	1778	broad.mit.edu	37	chr14	102508276	102508276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctcaggcccctcactcGgggctctcctttcccttgac	7	18	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102508276	T	T	102508276	1	4	37	0	1	0	0	0	0	0	0	0	4881	1131	39	1		1	DYNC1H1	14	102508276	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	10437423	102508276	4841264	466	47138											
OR4N4	283694	broad.mit.edu	37	chr15	22344710	22344710	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattcctgggactttcccaAgattctggaatgcaattgat	8	8	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22344710	T	T	22344710	1	4	37	0	1	0	0	0	0	0	0	0	11172	87	3	5		5	OR4N4	15	22344710	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08		22344710	80186682	467	47139											
RYR3	6263	broad.mit.edu	37	chr15	33865619	33865619	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggctaagggaatagggaAggaacaagaaagaaaaatga	13	2	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33865619	G	G	33865619	1	3	37	0	1	0	0	0	0	0	0	0	13881	87	3	5		5	RYR3	15	33865619	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	11520909	33865619	68665773	468	47140											
RYR3	6263	broad.mit.edu	37	chr15	34112970	34112970	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatccagagttgtcaaagtgGtgaggatgaagaagaagatg	14	3	1	6			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34112970	C	C	34112970	3	2	37	1	0	0	0	0	1	0	0	0	13881	1261	44	4	11082	4	RYR3	15	34112970	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	247351	34112970	68418422	469	47141											
MAP1A	4130	broad.mit.edu	37	chr15	43821529	43821529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagccagcgtcccctgcaCggcgtctggatcttcgggga	13	15	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43821529	A	A	43821529	2	1	37	1	0	0	0	0	0	0	0	1	9319	527	19	3		3	MAP1A	15	43821529	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9708559	43821529	58709863	470	47142											
WDR76	79968	broad.mit.edu	37	chr15	44158515	44158515	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttccatcaatgccatgcaCccaactcggtatattttggc	7	12	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44158515	T	T	44158515	2	4	37	1	0	0	0	0	0	0	0	1	17453	506	18	4		4	WDR76	15	44158515	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	336986	44158515	58372877	471	47143											
CASC4	113201	broad.mit.edu	37	chr15	44647365	44647365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcttagcattctctgacCaagatcatccatgatagctc	6	12	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44647365	T	T	44647365	1	4	37	0	1	0	0	0	0	0	0	0	2688	609	21	4		4	CASC4	15	44647365	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	488850	44647365	57884027	472	47144											
SPG11	80208	broad.mit.edu	37	chr15	44862813	44862813	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgccctccatgtggcaCgtcagggtgaagcaatgatg	13	9	1	3	rs150121550	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44862813	T	T	44862813	2	4	37	1	0	0	0	0	0	0	0	1	15159	523	19	4		4	SPG11	15	44862813	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	215448	44862813	57668579	473	47145											
SHC4	399694	broad.mit.edu	37	chr15	49231519	49231519	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagaggaaggacgctggGgcgagttatgaagggcaggc	20	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49231519	C	C	49231519	1	2	37	0	1	0	0	0	0	0	0	0	14386	1247	43	4		4	SHC4	15	49231519	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4368706	49231519	53299873	474	47146											
AP4E1	23431	broad.mit.edu	37	chr15	51223057	51223057	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtaaccattttgaagcAagtagttggaggaaagctcc	10	6	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51223057	C	C	51223057	3	2	37	1	0	0	0	0	1	0	0	0	754	130	5	5	784	5	AP4E1	15	51223057	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1991538	51223057	51308335	475	47147											
GLDN	342035	broad.mit.edu	37	chr15	51693895	51693895	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgggcacgttgtttacaAcaactctctctactaccaca	6	13	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51693895	G	G	51693895	3	3	37	1	0	0	0	0	1	0	0	0	6498	43	2	5	1167	5	GLDN	15	51693895	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	470838	51693895	50837497	476	47148											
GLDN	342035	broad.mit.edu	37	chr15	51696845	51696845	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaacttcccagtctgttcTtgccatgttagcatacaaca	6	11	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51696845	C	C	51696845	3	2	37	1	0	0	0	0	1	0	0	0	6498	1609	56	5	1588	5	GLDN	15	51696845	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2950	51696845	50834547	477	47149											
WDR72	256764	broad.mit.edu	37	chr15	53889379	53889379	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttaccattctctgccatGgacactggttgactattgac	8	11	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53889379	T	T	53889379	2	4	37	1	0	0	0	0	0	0	0	1	17449	1335	47	2		2	WDR72	15	53889379	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2192534	53889379	48642013	478	47150											
ALDH1A2	8854	broad.mit.edu	37	chr15	58247366	58247366	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagggacagacgtgcagGctgggcttcatcctccttct	13	11	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58247366	T	T	58247366	1	4	37	0	1	0	0	0	0	0	0	0	491	1218	42	3		3	ALDH1A2	15	58247366	3'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4357987	58247366	44284026	479	47151											
VPS13C	54832	broad.mit.edu	37	chr15	62212148	62212148	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaagaggttagcaattatAtgtttcaaatgttgtatctc	7	5	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62212148	G	G	62212148	1	3	37	0	1	0	0	0	0	0	0	0	17318	464	16	5		5	VPS13C	15	62212148	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3964782	62212148	40319244	480	47152											
THSD4	79875	broad.mit.edu	37	chr15	71447172	71447172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctggaacatactcaccAtcctgcctgttgctattttc	6	14	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71447172	G	G	71447172	1	3	37	0	1	0	0	0	0	0	0	0	16001	232	8	5		5	THSD4	15	71447172	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	9235024	71447172	31084220	481	47153											
KIAA1024	23251	broad.mit.edu	37	chr15	79755386	79755386	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaactgtgccacttgtctgGacttctttgtgcccctctgc	9	14	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79755386	T	T	79755386	1	4	37	0	1	0	0	0	0	0	0	0	8275	1189	41	3		3	KIAA1024	15	79755386	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	8308214	79755386	22776006	482	47154											
SLCO3A1	28232	broad.mit.edu	37	chr15	92669539	92669539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgttcagggaccctagCaatctccctctgcagtaggt	10	13	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92669539	A	A	92669539	1	1	37	0	1	0	0	0	0	0	0	0	14842	725	25	3		3	SLCO3A1	15	92669539	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	12914153	92669539	9861853	483	47155											
CHD2	1106	broad.mit.edu	37	chr15	93467813	93467813	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccctgcagtacaaatgtgCtgctagcctaggacaagcta	10	11	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93467813	G	G	93467813	1	3	37	0	1	0	0	0	0	0	0	0	3356	812	28	4		4	CHD2	15	93467813	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	798274	93467813	9063579	484	47156											
GRIN2A	2903	broad.mit.edu	37	chr16	10007565	10007565	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattctacgcttcatttacActtcactcatcaaaacactc	1	13	5	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10007565	T	T	10007565	1	4	37	0	1	0	0	0	0	0	0	0	6845	174	6	5		5	GRIN2A	16	10007565	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08		10007565	80347188	485	47157											
TXNDC11	51061	broad.mit.edu	37	chr16	11829940	11829940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatggactgtccacaccaaGgggcatagaagaagagcagt	13	9	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11829940	T	T	11829940	3	4	37	1	0	0	0	0	1	0	0	0	16918	1000	35	2	2516	2	TXNDC11	16	11829940	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1822375	11829940	78524813	486	47158											
SNX29	92017	broad.mit.edu	37	chr16	12371874	12371874	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaactcgcaagctcctAcgaaagaaagctcatcgagg	10	10	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12371874	G	G	12371874	3	3	37	1	0	0	0	0	1	0	0	0	15012	391	14	5	634	5	SNX29	16	12371874	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	541934	12371874	77982879	487	47159											
ABCC1	4363	broad.mit.edu	37	chr16	16110392	16110392	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtgacatcactttctacGtctacttttccctcttactc	3	14	4	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16110392	A	A	16110392	3	1	37	1	0	0	0	0	1	0	0	0	49	1145	40	4	547	4	ABCC1	16	16110392	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3738518	16110392	74244361	488	47160											
SMG1	23049	broad.mit.edu	37	chr16	18840561	18840561	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaatttcccccatttttcAagtttcctaccttgaggaaa	4	10	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18840561	C	C	18840561	1	2	37	0	1	0	0	0	0	0	0	0	14909	145	5	5		5	SMG1	16	18840561	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2730169	18840561	71514192	489	47161											
GPR139	124274	broad.mit.edu	37	chr16	20043715	20043715	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtatgagaccgtgtggtacTtgagcgggtggcagacagcg	18	7	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20043715	C	C	20043715	3	2	37	1	0	0	0	0	1	0	0	0	6713	1609	56	5	661	5	GPR139	16	20043715	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1203154	20043715	70311038	490	47162											
GP2	2813	broad.mit.edu	37	chr16	20335217	20335217	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcaggccttcaccagCacctctgttttccagaaaca	8	15	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20335217	A	A	20335217	2	1	37	1	0	0	0	0	0	0	0	1	6647	697	25	3		3	GP2	16	20335217	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	291502	20335217	70019536	491	47163											
MYST1	84148	broad.mit.edu	37	chr16	31131492	31131492	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttcctgatgaccctagcCtttttccatcacagattctg	5	14	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31131492	G	G	31131492	1	3	37	0	1	0	0	0	0	0	0	0	10196	696	24	4		4	MYST1	16	31131492	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	10796275	31131492	59223261	492	47164											
MYST1	84148	broad.mit.edu	37	chr16	31131649	31131649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagcactcttatggccCatacttacagttaaccggcg	9	13	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31131649	A	A	31131649	1	1	37	0	1	0	0	0	0	0	0	0	10196	609	21	2		2	MYST1	16	31131649	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	157	31131649	59223104	493	47165											
OGFOD1	55239	broad.mit.edu	37	chr16	56485540	56485540	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagatgaatgggaagcggCcagcggagcccggcccagcc	16	12	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56485540	T	T	56485540	3	4	37	1	0	0	0	0	1	0	0	0	10936	739	26	4	18	4	OGFOD1	16	56485540	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	25353891	56485540	33869213	494	47166											
CCDC113	29070	broad.mit.edu	37	chr16	58296307	58296307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaggaagaggtgagtgagGcccttcacgatgttgatttt	14	5	1	5			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58296307	C	C	58296307	3	2	37	1	0	0	0	0	1	0	0	0	2776	1203	42	4	668	4	CCDC113	16	58296307	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1810767	58296307	32058446	495	47167											
CDH8	1006	broad.mit.edu	37	chr16	61851230	61851230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacacaccacacacacacacAcacacacacacacacagtat	1	18	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61851230	G	G	61851230	1	3	37	0	1	0	0	0	0	0	0	0	3146	174	6	5		5	CDH8	16	61851230	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3554923	61851230	28503523	496	47168											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67860156	67860156	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagattggttcggggctgCtgcgggagaaagacttcttc	15	7	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67860156	T	T	67860156	2	4	37	1	0	0	0	0	0	0	0	1	16757	796	28	4		4	TSNAXIP1	16	67860156	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6008926	67860156	22494597	497	47169											
SLC7A6	9057	broad.mit.edu	37	chr16	68321600	68321600	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaagaggggttgggcccCtgtgccctcaactcaagcct	12	12	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68321600	T	T	68321600	1	4	37	0	1	0	0	0	0	0	0	0	14815	696	24	4		4	SLC7A6	16	68321600	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	461444	68321600	22033153	498	47170											
HYDIN	54768	broad.mit.edu	37	chr16	70842025	70842025	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaagagcacaccaggagctCaagtctaccccagcccctcc	8	17	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70842025	A	A	70842025	1	1	37	0	1	0	0	0	0	0	0	0	7537	841	29	3		3	HYDIN	16	70842025	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2520425	70842025	19512728	499	47171											
CNTNAP4	85445	broad.mit.edu	37	chr16	76572213	76572213	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctccttttacaaagaatacCtttctgtgatcattgccaaa	5	10	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76572213	G	G	76572213	3	3	37	1	0	0	0	0	1	0	0	0	3681	681	24	4	3283	4	CNTNAP4	16	76572213	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5730188	76572213	13782540	500	47172											
ADAMTS18	170692	broad.mit.edu	37	chr16	77356169	77356170	+	Intron	DNP	GG	TT	TT													tctctcacaccactgttcacGgtacacacgatatgataaaa							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	77356170	TT	TT	77356169	1	4	37	0	1	0	0	0	0	0	0	0	263	1131	39	1		1	ADAMTS18	16	77356169	Intron	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	783956	77356169	12998584	501	47173											
CDYL2	124359	broad.mit.edu	37	chr16	80646392	80646392	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggcactgaaggtgtgaagGacatgaggcagccaagccaa	14	9	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80646392	A	A	80646392	1	1	37	0	1	0	0	0	0	0	0	0	3216	1189	41	4		4	CDYL2	16	80646392	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3290223	80646392	9708361	502	47174											
CDH13	1012	broad.mit.edu	37	chr16	83378607	83378607	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtcatggaagggtcaccCacaggtatgtcacattggct	11	11	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83378607	A	A	83378607	2	1	37	1	0	0	0	0	0	0	0	1	3129	581	21	2		2	CDH13	16	83378607	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2732215	83378607	6976146	503	47175											
DERL2	51009	broad.mit.edu	37	chr17	5388597	5388597	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatttcatcatttacaacAaagaattagtaggtctagca	5	6	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5388597	G	G	5388597	1	3	37	0	1	0	0	0	0	0	0	0	4487	145	5	5		5	DERL2	17	5388597	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08		5388597	75806613	504	47176											
TP53	7157	broad.mit.edu	37	chr17	7578413	7578413	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgggggcagcgcctcaCaacctccgtcatgtgctgtg	14	12	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578413	T	T	7578413	3	4	37	1	0	0	0	0	1	0	0	0	16505	478	17	4	781	4	TP53	17	7578413	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2189816	7578413	73616797	505	47177											
DNAH2	146754	broad.mit.edu	37	chr17	7667441	7667441	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccgccttcagaatcagCcgccctccgcagacactgga	9	17	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7667441	T	T	7667441	2	4	37	1	0	0	0	0	0	0	0	1	4642	738	26	4		4	DNAH2	17	7667441	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	89028	7667441	73527769	506	47178											
DNAH2	146754	broad.mit.edu	37	chr17	7671592	7671592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccttagagagaggtgaggCttctcctctgctccggggtg	15	11	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7671592	A	A	7671592	1	1	37	0	1	0	0	0	0	0	0	0	4642	812	28	3		3	DNAH2	17	7671592	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4151	7671592	73523618	507	47179											
MYH1	4619	broad.mit.edu	37	chr17	10398023	10398023	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacattttaaggacattcaTttgacgaatttctacttctt	6	7	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10398023	C	C	10398023	1	2	37	0	1	0	0	0	0	0	0	0	10123	1508	52	5		5	MYH1	17	10398023	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	2726431	10398023	70797187	508	47180											
MYH1	4619	broad.mit.edu	37	chr17	10402375	10402375	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcgagagctgtgaaactagTgtgtccttttcatctagctg	10	9	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10402375	A	A	10402375	2	1	37	1	0	0	0	0	0	0	0	1	10123	1683	59	5		5	MYH1	17	10402375	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	4352	10402375	70792835	509	47181											
TRPV2	51393	broad.mit.edu	37	chr17	16335351	16335351	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgccacagagtcagtgCagcccatggagggacaggag	14	11	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16335351	T	T	16335351	4	4	37	1	0	0	0	0	0	1	0	0	16721	711	25	4	1768	4	TRPV2	17	16335351	Nonsense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	5932976	16335351	64859859	510	47182											
CORO6	84940	broad.mit.edu	37	chr17	27943884	27943884	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctgcaaaatcagtcggttCaggggcgcgcccggacaagg	14	13	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27943884	A	A	27943884	1	1	37	0	1	0	0	0	0	0	0	0	3790	841	29	3		3	CORO6	17	27943884	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	11608533	27943884	53251326	511	47183											
RPL23	9349	broad.mit.edu	37	chr17	37010000	37010000	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaaaaaggaagtcgattCaaaggacactgggatatgaa	11	4	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37010000	A	A	37010000	1	1	37	0	1	0	0	0	0	0	0	0	13681	841	29	3		3	RPL23	17	37010000	5'UTR	SNP	C	TCGA-17-Z003-01A-01W-0746-08	9066116	37010000	44185210	512	47184											
CDK12	51755	broad.mit.edu	37	chr17	37667755	37667755	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagccactgtaagtttAtgtcatggttgttttttata	8	5	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37667755	T	T	37667755	1	4	37	0	1	0	0	0	0	0	0	0	3158	464	16	5		5	CDK12	17	37667755	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	657755	37667755	43527455	513	47185											
KRT26	353288	broad.mit.edu	37	chr17	38926577	38926577	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtatctccaggtcggttgtAcaaagggtcagttcatccaa	10	9	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38926577	T	T	38926577	4	4	37	1	0	0	0	0	0	1	0	0	8534	389	14	5	821	5	KRT26	17	38926577	Nonsense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1258822	38926577	42268633	514	47186											
KRT28	162605	broad.mit.edu	37	chr17	38956072	38956072	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaagcctgcacctccaTtgaggggtctgacagatcca	10	13	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38956072	C	C	38956072	3	2	37	1	0	0	0	0	1	0	0	0	8536	1493	52	5	1352	5	KRT28	17	38956072	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	29495	38956072	42239138	515	47187											
KRT12	3859	broad.mit.edu	37	chr17	39019875	39019875	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccccgctctgcaacagcaaAgacagccagggggctcgagc	12	15	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39019875	T	T	39019875	1	4	37	0	1	0	0	0	0	0	0	0	8520	87	3	5		5	KRT12	17	39019875	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	63803	39019875	42175335	516	47188											
KRT15	3866	broad.mit.edu	37	chr17	39671752	39671752	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggccctcgagcaggctgcGgtaagtagcgatctcctgct	13	13	1	0	rs138894344		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39671752	C	C	39671752	3	2	37	1	0	0	0	0	1	0	0	0	8523	1116	39	4	163	4	KRT15	17	39671752	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	651877	39671752	41523458	517	47189											
AOC3	8639	broad.mit.edu	37	chr17	41003593	41003593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcgctttctgacccagcGgctggggccagggctggtgg	18	11	1	1	rs402680		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41003593	T	T	41003593	3	4	37	1	0	0	0	0	1	0	0	0	730	1116	39	1	235	1	AOC3	17	41003593	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1331841	41003593	40191617	518	47190											
NSF	4905	broad.mit.edu	37	chr17	44833115	44833115	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttttgatgaatAgttttttacggaccctcatc	5	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44833115	T	T	44833115	1	4	37	0	1	0	0	0	0	0	0	0	10766	435	15	5		5	NSF	17	44833115	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3829522	44833115	36362095	519	47191											
ITGB3	3690	broad.mit.edu	37	chr17	45368339	45368339	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatccgttctaaagtagAgctggaagtgcgtgacctcc	11	9	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45368339	G	G	45368339	3	3	37	1	0	0	0	0	1	0	0	0	7965	304	11	5	1179	5	ITGB3	17	45368339	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	535224	45368339	35826871	520	47192											
KIF2B	84643	broad.mit.edu	37	chr17	51901229	51901229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagcctccaacgagttgGtgtaccagttcaccgcccag	9	14	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901229	T	T	51901229	3	4	37	1	0	0	0	0	1	0	0	0	8368	1261	44	3	837	3	KIF2B	17	51901229	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6532890	51901229	29293981	521	47193											
TEX14	56155	broad.mit.edu	37	chr17	56700442	56700442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccatggagcggggctcagCgtgcaacacagggctcccat	13	13	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56700442	A	A	56700442	1	1	37	0	1	0	0	0	0	0	0	0	15900	783	27	3		3	TEX14	17	56700442	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4799213	56700442	24494768	522	47194											
BCAS3	54828	broad.mit.edu	37	chr17	59161875	59161875	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgccagggtcatcccGtccagtctctgatcgaaggg	12	13	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59161875	C	C	59161875	3	2	37	1	0	0	0	0	1	0	0	0	1357	1145	40	4	2506	4	BCAS3	17	59161875	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2461433	59161875	22033335	523	47195											
GPR142	350383	broad.mit.edu	37	chr17	72366624	72366625	+	Intron	DNP	CC	GA	GA													ccagccaggttagaaatagaCcagaggctctgactctgccc							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	72366625	GA	GA	72366624	1	3	37	0	1	0	0	0	0	0	0	0	6715	522	18	4		4	GPR142	17	72366624	Intron	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	13204749	72366624	8828586	524	47196											
LAMA1	284217	broad.mit.edu	37	chr18	7016372	7016372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaggtatgaaatcctcCagggaaagaagagaaaaagt	10	4	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7016372	A	A	7016372	1	1	37	0	1	0	0	0	0	0	0	0	8677	609	21	2		2	LAMA1	18	7016372	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08		7016372	71060876	525	47197											
PTPRM	5797	broad.mit.edu	37	chr18	8248266	8248266	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attggagttttaattctgtaTaatgcagtgattataagcac	8	4	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8248266	C	C	8248266	1	2	37	0	1	0	0	0	0	0	0	0	12914	1421	49	5		5	PTPRM	18	8248266	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	1231894	8248266	69828982	526	47198											
ANKRD12	23253	broad.mit.edu	37	chr18	9256880	9256880	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctccagatctgtatcCatgatttctgttgctagttc	7	11	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9256880	T	T	9256880	2	4	37	1	0	0	0	0	0	0	0	1	640	581	21	4		4	ANKRD12	18	9256880	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1008614	9256880	68820368	527	47199											
RALBP1	10928	broad.mit.edu	37	chr18	9517288	9517288	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcatgaagtgtgaaggcatCtacagagtatcaggtactgg	14	6	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9517288	T	T	9517288	2	4	37	1	0	0	0	0	0	0	0	1	13120	903	32	4		4	RALBP1	18	9517288	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	260408	9517288	68559960	528	47200											
AFG3L2	10939	broad.mit.edu	37	chr18	12351047	12351047	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactgttactgattttaatAtgcttctaaatagggtcctc	6	7	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12351047	G	G	12351047	1	3	37	0	1	0	0	0	0	0	0	0	360	464	16	5		5	AFG3L2	18	12351047	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2833759	12351047	65726201	529	47201											
MC2R	4158	broad.mit.edu	37	chr18	13885541	13885541	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcttgtggttaaggcgGggatgttacttggacttgac	14	7	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13885541	T	T	13885541	1	4	37	0	1	0	0	0	0	0	0	0	9457	1247	43	2		2	MC2R	18	13885541	5'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1534494	13885541	64191707	530	47202											
OSBPL1A	114876	broad.mit.edu	37	chr18	21882941	21882942	+	Intron	INS	-	TG	TG													ttcaagcctaagacattcttINStgtgtgtgtgtgtgtgtggg					rs144360837	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	21882942	TG	TG	21882941	6	5	37	0	1	1	1	0	0	0	0	0	11371	1856	64	0		0	OSBPL1A	18	21882941	Intron	INS	-	TCGA-17-Z003-01A-01W-0746-08	7997400	21882941	56194307	531	47203											
AQP4	361	broad.mit.edu	37	chr18	24442010	24442010	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccagaatcagttttcacaCtattaagaatcatcaaaaat	4	8	4	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24442010	G	G	24442010	1	3	37	0	1	0	0	0	0	0	0	0	830	580	20	4		4	AQP4	18	24442010	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2559069	24442010	53635238	532	47204											
DSG1	1828	broad.mit.edu	37	chr18	28935116	28935116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttggcaccagcatgggtgCtgggagcggtgccctgagtg	19	9	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28935116	A	A	28935116	3	1	37	1	0	0	0	0	1	0	0	0	4816	797	28	3	3015	3	DSG1	18	28935116	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4493106	28935116	49142132	533	47205											
DCC	1630	broad.mit.edu	37	chr18	50994155	50994155	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaagaaggtagatactatCatagaaagcatctgtaagac	8	6	2	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50994155	T	T	50994155	1	4	37	0	1	0	0	0	0	0	0	0	4315	841	29	4		4	DCC	18	50994155	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	22059039	50994155	27083093	534	47206											
WDR7	23335	broad.mit.edu	37	chr18	54605764	54605764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatagaaatgttttgtagGtacacagacatacggctctt	9	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54605764	T	T	54605764	3	4	37	1	0	0	0	0	1	0	0	0	17447	1275	44	3	3922	3	WDR7	18	54605764	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3611609	54605764	23471484	535	47207											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60036549	60036549	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgggttccccaaaacgtGgacccttgccccagtgcgcc	11	16	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60036549	T	T	60036549	4	4	37	1	0	0	0	0	0	1	0	0	16407	1349	47	2	1433	2	TNFRSF11A	18	60036549	Nonsense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5430785	60036549	18040699	536	47208											
PALM	5064	broad.mit.edu	37	chr19	734199	734199	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgggcacgcccaaaggtagGacctctggaaggaactcgtg	15	10	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	734199	C	C	734199	1	2	37	0	1	0	0	0	0	0	0	0	11502	1189	41	4		4	PALM	19	734199	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08		734199	58394784	537	47209											
TLE2	7089	broad.mit.edu	37	chr19	3006032	3006032	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtctctaggagcctagctCaacgtgggggtctctggagc	15	10	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3006032	G	G	3006032	1	3	37	0	1	0	0	0	0	0	0	0	16062	841	29	4		4	TLE2	19	3006032	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2271833	3006032	56122951	538	47210											
ALKBH7	84266	broad.mit.edu	37	chr19	6374125	6374125	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaagagtcacatagggaaAccagccccttgccgttttct	9	12	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6374125	G	G	6374125	1	3	37	0	1	0	0	0	0	0	0	0	532	58	2	5		5	ALKBH7	19	6374125	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	3368093	6374125	52754858	539	47211											
MUC16	94025	broad.mit.edu	37	chr19	9071130	9071130	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctgagtcagctaggacaGaggattgtgatttatgtcca	11	7	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9071130	T	T	9071130	3	4	37	1	0	0	0	0	1	0	0	0	10067	942	33	3	27535	3	MUC16	19	9071130	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2697005	9071130	50057853	540	47212											
KANK2	25959	broad.mit.edu	37	chr19	11286646	11286646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaagcaggctgagatgaGgtcagggcttagctccatcc	14	11	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11286646	T	T	11286646	3	4	37	1	0	0	0	0	1	0	0	0	8047	1000	35	2	799	2	KANK2	19	11286646	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2215516	11286646	47842337	541	47213											
CYP4F12	66002	broad.mit.edu	37	chr19	15784478	15784478	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttctataacaactgccgcCggctccagtgtttcccacag	7	16	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15784478	T	T	15784478	3	4	37	1	0	0	0	0	1	0	0	0	4220	643	23	4	141	4	CYP4F12	19	15784478	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4497832	15784478	43344505	542	47214											
CYP4F2	8529	broad.mit.edu	37	chr19	16000637	16000637	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgaccccacagatacaGggtggggatcagcatgagat	13	9	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16000637	A	A	16000637	1	1	37	0	1	0	0	0	0	0	0	0	4221	1015	35	4		4	CYP4F2	19	16000637	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	216159	16000637	43128346	543	47215											
CCDC123	84902	broad.mit.edu	37	chr19	33444401	33444401	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacgtttaaaaaaataagCcccaaagcaaatgctatcaa	5	9	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33444401	T	T	33444401	1	4	37	0	1	0	0	0	0	0	0	0	2785	754	26	4		4	CCDC123	19	33444401	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	17443764	33444401	25684582	544	47216											
ZNF181	339318	broad.mit.edu	37	chr19	35231858	35231858	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgatatattaaagaagaActtaccaaaaaagtcagtta	5	4	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35231858	G	G	35231858	3	3	37	1	0	0	0	0	1	0	0	0	17875	43	2	5	586	5	ZNF181	19	35231858	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1787457	35231858	23897125	545	47217											
ATP4A	495	broad.mit.edu	37	chr19	36051578	36051578	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgggagctgctgcatgTggggaggtaaaggatgagga	22	3	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36051578	C	C	36051578	1	2	37	0	1	0	0	0	0	0	0	0	1149	1711	59	5		5	ATP4A	19	36051578	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	819720	36051578	23077405	546	47218											
NPHS1	4868	broad.mit.edu	37	chr19	36339163	36339163	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggggctcacattttacgTtcaggatgagcgacttcttg	12	9	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36339163	C	C	36339163	3	2	37	1	0	0	0	0	1	0	0	0	10677	1725	60	5	2498	5	NPHS1	19	36339163	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	287585	36339163	22789820	547	47219											
RASGRP4	115727	broad.mit.edu	37	chr19	38900555	38900555	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgacggacgtaccactaaaGgcagtgtggatgggaaggcg	16	7	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38900555	A	A	38900555	1	1	37	0	1	0	0	0	0	0	0	0	13185	1015	35	4		4	RASGRP4	19	38900555	3'UTR	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2561392	38900555	20228428	548	47220											
ZNF780B	163131	broad.mit.edu	37	chr19	40553238	40553238	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagcacatgggctgtcCgggacaatgatggcttcccc	12	13	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40553238	T	T	40553238	1	4	37	0	1	0	0	0	0	0	0	0	18282	667	23	4		4	ZNF780B	19	40553238	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1652683	40553238	18575745	549	47221											
SPTBN4	57731	broad.mit.edu	37	chr19	41062057	41062057	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctcaaggagctgggtgagGagcgccgggtggctctggaa	19	9	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41062057	A	A	41062057	3	1	37	1	0	0	0	0	1	0	0	0	15239	1175	41	4	5246	4	SPTBN4	19	41062057	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	508819	41062057	18066926	550	47222											
CYP2B6	1555	broad.mit.edu	37	chr19	41509908	41509908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtggatgtgattggcagttCcgagagaaatatggggacgt	16	4	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41509908	A	A	41509908	3	1	37	1	0	0	0	0	1	0	0	0	4197	854	30	3	180	3	CYP2B6	19	41509908	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	447851	41509908	17619075	551	47223											
PSG9	5678	broad.mit.edu	37	chr19	43762248	43762248	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatttgggatttgcttgtgCccatgggacacaggctggga	15	7	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43762248	T	T	43762248	1	4	37	0	1	0	0	0	0	0	0	0	12768	754	26	4		4	PSG9	19	43762248	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	2252340	43762248	15366735	552	47224											
CEACAM20	125931	broad.mit.edu	37	chr19	45029235	45029235	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgggttggcattgagggtgAgctgggctgcagctggagga	21	5	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45029235	T	T	45029235	3	4	37	1	0	0	0	0	1	0	0	0	3221	304	11	5	1740	5	CEACAM20	19	45029235	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1266987	45029235	14099748	553	47225											
C5AR1	728	broad.mit.edu	37	chr19	47823817	47823817	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttgccctaccaggtgacGgggataatgatgtccttcct	12	10	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47823817	A	A	47823817	2	1	37	1	0	0	0	0	0	0	0	1	2304	1103	39	4		4	C5AR1	19	47823817	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	2794582	47823817	11305166	554	47226											
SIGLEC12	89858	broad.mit.edu	37	chr19	52003577	52003577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagaaacgagggtcagcCcagcccccactgtccctctc	11	16	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52003577	A	A	52003577	1	1	37	0	1	0	0	0	0	0	0	0	14421	624	22	2		2	SIGLEC12	19	52003577	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4179760	52003577	7125406	555	47227											
ZNF528	84436	broad.mit.edu	37	chr19	52909317	52909317	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccctcagaagccgggaTctgccctggtggatctctga	12	13	3	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52909317	C	C	52909317	1	2	37	0	1	0	0	0	0	0	0	0	18096	1450	50	5		5	ZNF528	19	52909317	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	905740	52909317	6219666	556	47228											
ZNF808	388558	broad.mit.edu	37	chr19	53058234	53058234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtttgtgacaaggctttcGtgtgtcgttcctatgtggca	13	7	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53058234	A	A	53058234	3	1	37	1	0	0	0	0	1	0	0	0	18302	1145	40	4	2075	4	ZNF808	19	53058234	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	148917	53058234	6070749	557	47229											
LAIR1	3903	broad.mit.edu	37	chr19	54875810	54875810	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtatatttaaagggatctctCcaggccctctaagaatcaac	7	10	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54875810	G	G	54875810	1	3	37	0	1	0	0	0	0	0	0	0	8674	870	30	4		4	LAIR1	19	54875810	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1817576	54875810	4253173	558	47230											
KIR3DL3	115653	broad.mit.edu	37	chr19	55247199	55247199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggacctcaggcacctatGgcctccccctgtatgttggt	12	13	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55247199	A	A	55247199	1	1	37	0	1	0	0	0	0	0	0	0	8393	1363	47	4		4	KIR3DL3	19	55247199	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	371389	55247199	3881784	559	47231											
KIR2DL3	3804	broad.mit.edu	37	chr19	55271927	55271927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcccagccgggccccacGgttctggcaggagagagcgt	15	14	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55271927	T	T	55271927	1	4	37	0	1	0	0	0	0	0	0	0	8388	1131	39	1		1	KIR2DL3	19	55271927	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	24728	55271927	3857056	560	47232											
ZNF582	147948	broad.mit.edu	37	chr19	56895314	56895314	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgattagtaaggggtaaCtgctgatggaaggcttttct	13	4	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56895314	T	T	56895314	3	4	37	1	0	0	0	0	1	0	0	0	18141	565	20	4	85	4	ZNF582	19	56895314	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1623387	56895314	2233669	561	47233											
PEG3	5178	broad.mit.edu	37	chr19	57328638	57328638	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaaaatgatagcgcctcTttctttcaagaactctcttt	5	10	5	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57328638	C	C	57328638	3	2	37	1	0	0	0	0	1	0	0	0	11814	1609	56	5	3598	5	PEG3	19	57328638	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	433324	57328638	1800345	562	47234											
PEG3	5178	broad.mit.edu	37	chr19	57347326	57347327	+	Intron	DNP	GG	AT	AT													gtaggaaagtgtcagagtaaGgaagtgcggtggtcactcca							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	57347327	AT	AT	57347326	1	1	37	0	1	0	0	0	0	0	0	0	11814	1015	35	4		4	PEG3	19	57347326	Intron	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	18688	57347326	1781657	563	47235											
ZNF132	7691	broad.mit.edu	37	chr19	58948146	58948146	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggattggtgaatctcagtGggatctgttaggcagactgg	16	5	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58948146	A	A	58948146	1	1	37	0	1	0	0	0	0	0	0	0	17848	1363	47	4		4	ZNF132	19	58948146	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1600820	58948146	180837	564	47236											
PLCB1	23236	broad.mit.edu	37	chr20	8862173	8862173	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttaagttaatgtattcatCagccccttttgtatatctct	4	8	3	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8862173	T	T	8862173	1	4	37	0	1	0	0	0	0	0	0	0	12122	841	29	4		4	PLCB1	20	8862173	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08		8862173	54163347	565	47237											
ANKRD5	63926	broad.mit.edu	37	chr20	10019172	10019172	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaccttggtgctcaccctGatgtgcaagaccgaatgggc	12	11	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10019172	A	A	10019172	3	1	37	1	0	0	0	0	1	0	0	0	676	1290	45	4	225	4	ANKRD5	20	10019172	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	1156999	10019172	53006348	566	47238											
SLC24A3	57419	broad.mit.edu	37	chr20	19665877	19665877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggcgtgaatgggacacGgagggacgatgttgtggctg	20	6	0	1	rs75574349	byFrequency;by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19665877	A	A	19665877	3	1	37	1	0	0	0	0	1	0	0	0	14581	1116	39	4	1242	4	SLC24A3	20	19665877	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	9646705	19665877	43359643	567	47239											
NANP	140838	broad.mit.edu	37	chr20	25596690	25596690	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatttttattgatccagacTgttgctttcaatcctgcatt	5	10	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25596690	C	C	25596690	2	2	37	1	0	0	0	0	0	0	0	1	10248	1567	55	5		5	NANP	20	25596690	Silent	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5930813	25596690	37428830	568	47240											
C20orf185	359710	broad.mit.edu	37	chr20	31656612	31656612	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctgcatttctccaggccCtggggaagctgcccctgcac	10	18	1	0	rs113939875		TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31656612	G	G	31656612	3	3	37	1	0	0	0	0	1	0	0	0	2119	680	24	4	1020	4	C20orf185	20	31656612	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	6059922	31656612	31368908	569	47241											
NCOA6	23054	broad.mit.edu	37	chr20	33345447	33345447	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggggagggtgggaaggCgtctgtaccgtggctaagga	22	5	1	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33345447	A	A	33345447	2	1	37	1	0	0	0	0	0	0	0	1	10328	755	27	3		3	NCOA6	20	33345447	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1688835	33345447	29680073	570	47242											
EIF6	3692	broad.mit.edu	37	chr20	33867098	33867098	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctcagccctcatcccGggaccagctctgacaagctg	9	18	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33867098	C	C	33867098	1	2	37	0	1	0	0	0	0	0	0	0	5087	1131	39	4		4	EIF6	20	33867098	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	521651	33867098	29158422	571	47243											
PHF20	51230	broad.mit.edu	37	chr20	34459638	34459638	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttgccactcctttggggAtggatccggggctgcaggct	15	11	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34459638	T	T	34459638	3	4	37	1	0	0	0	0	1	0	0	0	11926	333	12	5	1199	5	PHF20	20	34459638	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	592540	34459638	28565882	572	47244											
RBL1	5933	broad.mit.edu	37	chr20	35693826	35693826	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccattagtactagatatttaCctattatcagtaaaacttga	4	7	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35693826	G	G	35693826	5	3	37	1	0	0	0	0	0	0	1	0	13217	521	18	4	2382	4	RBL1	20	35693826	Splice_Site	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1234188	35693826	27331694	573	47245											
TOX2	84969	broad.mit.edu	37	chr20	42694513	42694514	+	Missense_Mutation	DNP	CC	GG	GG													gcctcccctgccagcctcgcCcggacgctgggctccaagtc							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	42694514	GG	GG	42694513	3	3	37	1	0	0	0	0	1	0	0	0	16502	610	22	4	1278	4	TOX2	20	42694513	Missense_Mutation	DNP	CC	TCGA-17-Z003-01A-01W-0746-08	7000687	42694513	20331007	574	47246											
SEMG2	6407	broad.mit.edu	37	chr20	43851066	43851066	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagctcctagtatataacAagaatcaacaccagacaaaa	5	9	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43851066	G	G	43851066	3	3	37	1	0	0	0	0	1	0	0	0	14158	131	5	5	799	5	SEMG2	20	43851066	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1156553	43851066	19174454	575	47247											
PCIF1	63935	broad.mit.edu	37	chr20	44567887	44567888	+	Missense_Mutation	DNP	GG	TT	TT													tgcaggctgggagaagtgctGgagccggagggagaatcgtc							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44567888	TT	TT	44567887	3	4	37	1	0	0	0	0	1	0	0	0	11674	1357	47	2	164	2	PCIF1	20	44567887	Missense_Mutation	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	716821	44567887	18457633	576	47248											
CD40	958	broad.mit.edu	37	chr20	44750366	44750366	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgacttgcacttcagtttGcagcctctgtcctggatgac	9	11	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44750366	A	A	44750366	1	1	37	0	1	0	0	0	0	0	0	0	3045	1334	46	4		4	CD40	20	44750366	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	182479	44750366	18275154	577	47249											
ATP9A	10079	broad.mit.edu	37	chr20	50230268	50230268	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacgaactggctgagggcgGctgaccgcttgtagctgttc	14	11	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50230268	A	A	50230268	3	1	37	1	0	0	0	0	1	0	0	0	1202	1203	42	4	648	4	ATP9A	20	50230268	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5479902	50230268	12795252	578	47250											
BAGE2	85319	broad.mit.edu	37	chr21	11046745	11046745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccttccactcctgcacaCgggccatcacgccctctcca	7	20	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11046745	T	T	11046745	1	4	37	0	1	0	0	0	0	0	0	0	1297	551	19	4		4	BAGE2	21	11046745	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08		11046745	37083150	579	47251											
BAGE2	85319	broad.mit.edu	37	chr21	11076095	11076095	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtaacacctattcatccaTcaaaagcctaagaaaaccat	4	11	2	1	rs145477924	by1000genomes	TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11076095	A	A	11076095	1	1	37	0	1	0	0	0	0	0	0	0	1297	1450	50	5		5	BAGE2	21	11076095	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	29350	11076095	37053800	580	47252											
NRIP1	8204	broad.mit.edu	37	chr21	16340473	16340473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagttaaaacaatagaaTcctggtgcacatcagagcca	9	8	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16340473	A	A	16340473	3	1	37	1	0	0	0	0	1	0	0	0	10747	1435	50	5	3439	5	NRIP1	21	16340473	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	5264378	16340473	31789422	581	47253											
TMPRSS15	5651	broad.mit.edu	37	chr21	19698655	19698655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagtgtcacagaaggaaaGcattaaaatcatgattttgg	9	4	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19698655	T	T	19698655	1	4	37	0	1	0	0	0	0	0	0	0	16369	986	34	3		3	TMPRSS15	21	19698655	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	3358182	19698655	28431240	582	47254											
C21orf29	54084	broad.mit.edu	37	chr21	45987842	45987842	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatcctgatcccgcttgtggCgccatcagaagggaccactt	10	13	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45987842	G	G	45987842	3	3	37	1	0	0	0	0	1	0	0	0	2146	768	27	4	1923	4	C21orf29	21	45987842	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	26289187	45987842	2142053	583	47255											
RASD2	23551	broad.mit.edu	37	chr22	35947517	35947517	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggggttgcagctggccGgtgaactcactacctgggct	16	11	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35947517	A	A	35947517	1	1	37	0	1	0	0	0	0	0	0	0	13175	1131	39	4		4	RASD2	22	35947517	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08		35947517	15357049	584	47256											
MB	4151	broad.mit.edu	37	chr22	36013168	36013168	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctgaacacccttgatctTagggtgtgggtggcaggggc	16	9	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36013168	C	C	36013168	1	2	37	0	1	0	0	0	0	0	0	0	9433	1769	61	5		5	MB	22	36013168	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	65651	36013168	15291398	585	47257											
MEI1	150365	broad.mit.edu	37	chr22	42172023	42172023	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatcataattatgggcccTtttcctgcccctctattcct	5	14	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42172023	C	C	42172023	1	2	37	0	1	0	0	0	0	0	0	0	9558	1624	56	5		5	MEI1	22	42172023	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08	6158855	42172023	9132543	586	47258											
SMC1B	27127	broad.mit.edu	37	chr22	45750875	45750875	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttgtctctgacagtctTtaagttctccagtgctcgta	7	10	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45750875	C	C	45750875	3	2	37	1	0	0	0	0	1	0	0	0	14896	1850	64	5	649	5	SMC1B	22	45750875	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	3578852	45750875	5553691	587	47259											
CRLF2	64109	broad.mit.edu	37	chrX	1327821	1327821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctagacacagagagacgcaTgaagttcacggtgaggcaac	13	9	1	5			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1327821	A	A	1327821	1	1	37	0	1	0	0	0	0	0	0	0	3919	1479	51	5		5	CRLF2	23	1327821	Intron	SNP	T	TCGA-17-Z003-01A-01W-0746-08		1327821	153942739	588	47260											
MID1	4281	broad.mit.edu	37	chrX	10535314	10535314	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgggagagttgggcccgcTcactgatgctttctggaacc	14	11	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10535314	C	C	10535314	3	2	37	1	0	0	0	0	1	0	0	0	9669	1551	54	5	1765	5	MID1	23	10535314	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	9207493	10535314	144735246	589	47261											
MOSPD2	158747	broad.mit.edu	37	chrX	14936918	14936918	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctacaagtaagtatactttCttcctacccaaacaaagttg	4	10	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14936918	T	T	14936918	1	4	37	0	1	0	0	0	0	0	0	0	9810	928	32	4		4	MOSPD2	23	14936918	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4401604	14936918	140333642	590	47262											
TMEM27	57393	broad.mit.edu	37	chrX	15657899	15657899	+	Intron	DEL	A	-	-													tctaaaatgcaatgataattAaaaataaacaaaataagaca							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15657899	-	-	15657899	6	5	37	0	1	1	0	1	0	0	0	0	16275	377	13	0		0	TMEM27	23	15657899	Intron	DEL	A	TCGA-17-Z003-01A-01W-0746-08	720981	15657899	139612661	591	47263											
SCML1	6322	broad.mit.edu	37	chrX	17771464	17771464	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggaacggctgtgaagctAtgctactacattgaccgact	11	10	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17771464	G	G	17771464	2	3	37	1	0	0	0	0	0	0	0	1	14022	436	16	5		5	SCML1	23	17771464	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2113565	17771464	137499096	592	47264											
FAM47A	158724	broad.mit.edu	37	chrX	34149861	34149861	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacagggatgtttaccagGctcagtgggtacctctgttg	12	11	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34149861	C	C	34149861	3	2	37	1	0	0	0	0	1	0	0	0	5620	1203	42	4	1844	4	FAM47A	23	34149861	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	16378397	34149861	121120699	593	47265											
FAM47B	170062	broad.mit.edu	37	chrX	34961693	34961693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcgcatctcatctccgcGtggatcctcccgagactgga	10	16	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961693	T	T	34961693	3	4	37	1	0	0	0	0	1	0	0	0	5621	1145	40	3	747	3	FAM47B	23	34961693	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	811832	34961693	120308867	594	47266											
CYBB	1536	broad.mit.edu	37	chrX	37653114	37653115	+	Intron	DNP	GG	TT	TT													ctctaggccattacaattgaGgactagatttcagtgagtga							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	37653115	TT	TT	37653114	1	4	37	0	1	0	0	0	0	0	0	0	4166	1015	35	2		2	CYBB	23	37653114	Intron	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	2691421	37653114	117617446	595	47267											
OTC	5009	broad.mit.edu	37	chrX	38271071	38271071	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaaacaaatatgactgCcacatataatagtcaaaaag	6	6	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38271071	G	G	38271071	1	3	37	0	1	0	0	0	0	0	0	0	11395	754	26	4		4	OTC	23	38271071	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	617957	38271071	116999489	596	47268											
MAOA	4128	broad.mit.edu	37	chrX	43590552	43590552	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggacctcctcggagaccAagtgaagctgaaccatcctg	10	12	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43590552	G	G	43590552	3	3	37	1	0	0	0	0	1	0	0	0	9317	130	5	5	736	5	MAOA	23	43590552	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	5319481	43590552	111680008	597	47269											
SHROOM4	57477	broad.mit.edu	37	chrX	50378521	50378521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaggctgagtcacgctgGttagggtacatgttctggtc	14	8	2	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50378521	T	T	50378521	3	4	37	1	0	0	0	0	1	0	0	0	14409	1252	44	3	3953	3	SHROOM4	23	50378521	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	6787969	50378521	104892039	598	47270											
KLF8	11279	broad.mit.edu	37	chrX	56269682	56269682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggctgcctacagagtcGcagtgacttgggccgctgga	15	10	0	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56269682	T	T	56269682	1	4	37	0	1	0	0	0	0	0	0	0	8423	1102	38	3		3	KLF8	23	56269682	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	5891161	56269682	99000878	599	47271											
HEPH	9843	broad.mit.edu	37	chrX	65392258	65392258	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggaacctacaagaagaccAtctataaagaatacaaggat	9	7	1	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65392258	G	G	65392258	3	3	37	1	0	0	0	0	1	0	0	0	7121	217	8	5	401	5	HEPH	23	65392258	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	9122576	65392258	89878302	600	47272											
GDPD2	54857	broad.mit.edu	37	chrX	69652880	69652880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaccctccccctcctccCcaggcttagaaacagcagtg	6	20	0	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69652880	A	A	69652880	1	1	37	0	1	0	0	0	0	0	0	0	6388	638	22	2		2	GDPD2	23	69652880	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	4260622	69652880	85617680	601	47273											
DACH2	117154	broad.mit.edu	37	chrX	85404023	85404023	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtccggatcctccgcggGctgggggccatccagcccgg	16	16	0	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85404023	A	A	85404023	2	1	37	1	0	0	0	0	0	0	0	1	4254	1190	42	4		4	DACH2	23	85404023	Silent	SNP	G	TCGA-17-Z003-01A-01W-0746-08	15751143	85404023	69866537	602	47274											
DRP2	1821	broad.mit.edu	37	chrX	100491011	100491011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaagtctcacaacctcCggtaagaaacaggtgcctta	8	10	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100491011	A	A	100491011	3	1	37	1	0	0	0	0	1	0	0	0	4804	666	23	1	286	1	DRP2	23	100491011	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	15086988	100491011	54779549	603	47275											
BTK	695	broad.mit.edu	37	chrX	100617171	100617171	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtatacctggtcctccTcaggcgttgggggaagaggc	14	12	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100617171	A	A	100617171	3	1	37	1	0	0	0	0	1	0	0	0	1567	1551	54	5	1453	5	BTK	23	100617171	Missense_Mutation	SNP	T	TCGA-17-Z003-01A-01W-0746-08	126160	100617171	54653389	604	47276											
GLRA4	441509	broad.mit.edu	37	chrX	102968324	102968324	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgcgcccttatgaatccAgggtttctgattgcctatct	8	12	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102968324	T	T	102968324	1	4	37	0	1	0	0	0	0	0	0	0	6521	203	7	5		5	GLRA4	23	102968324	Intron	SNP	A	TCGA-17-Z003-01A-01W-0746-08	2351153	102968324	52302236	605	47277											
TEX13A	56157	broad.mit.edu	37	chrX	104463837	104463837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctattctgtggggcccccCatcagaccacaggctagtat	10	13	3	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104463837	A	A	104463837	3	1	37	1	0	0	0	0	1	0	0	0	15898	594	21	2	194	2	TEX13A	23	104463837	Missense_Mutation	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1495513	104463837	50806723	606	47278											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104984384	104984384	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagccactttttgtgttttCttgtagaaggtcccacccac	8	11	1	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104984384	G	G	104984384	1	3	37	0	1	0	0	0	0	0	0	0	7732	928	32	4		4	IL1RAPL2	23	104984384	Intron	SNP	C	TCGA-17-Z003-01A-01W-0746-08	520547	104984384	50286176	607	47279											
CXorf41	139212	broad.mit.edu	37	chrX	106462128	106462128	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgaggaaaataatgaggaCatctggaattcagaagagat	12	4	2	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106462128	T	T	106462128	2	4	37	1	0	0	0	0	0	0	0	1	4143	477	17	4		4	CXorf41	23	106462128	Silent	SNP	C	TCGA-17-Z003-01A-01W-0746-08	1477744	106462128	48808432	608	47280											
RAP2C	57826	broad.mit.edu	37	chrX	131350977	131350977	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caacccagaagtcgatgtcgGattaccacacccccttctaa	6	15	1	1			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131350977	C	C	131350977	1	2	37	0	1	0	0	0	0	0	0	0	13150	1189	41	4		4	RAP2C	23	131350977	Intron	SNP	G	TCGA-17-Z003-01A-01W-0746-08	24888849	131350977	23919583	609	47281											
GPR112	139378	broad.mit.edu	37	chrX	135405117	135405117	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactaataacgccctcctggGcagagaagacatagaccttg	9	11	0	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135405117	C	C	135405117	3	2	37	1	0	0	0	0	1	0	0	0	6694	1203	42	4	257	4	GPR112	23	135405117	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4054140	135405117	19865443	610	47282											
VGLL1	51442	broad.mit.edu	37	chrX	135631059	135631059	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagtctcctccagcaagacAgatgcctagcccgtcctcag	8	15	2	2			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135631059	T	T	135631059	4	4	37	1	0	0	0	0	0	1	0	0	17285	180	7	5	532	5	VGLL1	23	135631059	Nonsense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	225942	135631059	19639501	611	47283											
ZIC3	7547	broad.mit.edu	37	chrX	136652166	136652166	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accactaaaaccccttctgcAgttcaaactagcaccagcca	4	16	2	0			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136652166	C	C	136652166	2	2	37	1	0	0	0	0	0	0	0	1	17806	175	7	5		5	ZIC3	23	136652166	Silent	SNP	A	TCGA-17-Z003-01A-01W-0746-08	1021107	136652166	18618394	612	47284											
MAGEC1	9947	broad.mit.edu	37	chrX	140994078	140994078	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaactcagagtacttttgaGggttttccccagtctcctct	8	11	3	3			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140994078	C	C	140994078	3	2	37	1	0	0	0	0	1	0	0	0	9272	991	35	4	894	4	MAGEC1	23	140994078	Missense_Mutation	SNP	G	TCGA-17-Z003-01A-01W-0746-08	4341912	140994078	14276482	613	47285											
MAGEC1	9947	broad.mit.edu	37	chrX	140994373	140994373	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttccagagttcccctgagAgaactcacagtacttttgag	8	10	1	4			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140994373	G	G	140994373	3	3	37	1	0	0	0	0	1	0	0	0	9272	296	11	5	1189	5	MAGEC1	23	140994373	Missense_Mutation	SNP	A	TCGA-17-Z003-01A-01W-0746-08	295	140994373	14276187	614	47286											
MAGEC2	51438	broad.mit.edu	37	chrX	141290890	141290891	+	Missense_Mutation	DNP	GG	AT	AT													cccacaggaattcataatatGgaggagaactgtggggcacc							TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	141290891	AT	AT	141290890	3	1	37	1	0	0	0	0	1	0	0	0	9273	1348	47	4	241	4	MAGEC2	23	141290890	Missense_Mutation	DNP	GG	TCGA-17-Z003-01A-01W-0746-08	296517	141290890	13979670	615	47287											
TCEA3	6920	broad.mit.edu	37	chr1	23719108	23719110	+	Intron	DEL	CAC	-	-													cactccacacatcatacacaCacacacacactccacacatc							TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23719110	-	-	23719108	6	5	38	0	1	1	0	1	0	0	0	0	15791	493	17	0		0	TCEA3	1	23719108	Intron	DEL	CAC	TCGA-17-Z004-01A-01W-0746-08		23719108	225531513	1	47288											
TTLL7	79739	broad.mit.edu	37	chr1	84386691	84386691	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaatgcttaaaataagCacacaagattaaaacatgaa	5	5	0	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84386691	T	T	84386691	1	4	38	0	1	0	0	0	0	0	0	0	16858	725	25	4		4	TTLL7	1	84386691	Intron	SNP	C	TCGA-17-Z004-01A-01W-0746-08	60667583	84386691	164863930	2	47289											
RNF115	27246	broad.mit.edu	37	chr1	145611303	145611303	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagccgcccaccggtttttcTgccacttttgcaagggcgag	11	13	1	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145611303	C	C	145611303	3	2	38	1	0	0	0	0	1	0	0	0	13541	1580	55	5	66	5	RNF115	1	145611303	Missense_Mutation	SNP	T	TCGA-17-Z004-01A-01W-0746-08	61224612	145611303	103639318	3	47290											
NBPF16	728936	broad.mit.edu	37	chr1	148752244	148752244	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaatccttgctaccatgaaCaatctgagtatttgatgaga	7	7	1	4			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148752244	G	G	148752244	1	3	38	0	1	0	0	0	0	0	0	0	10291	493	17	4		4	NBPF16	1	148752244	Intron	SNP	C	TCGA-17-Z004-01A-01W-0746-08	3140941	148752244	100498377	4	47291											
TPM3	7170	broad.mit.edu	37	chr1	154145257	154145257	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcctaaaaaagcactataGatgactcccattccctaggc	8	12	0	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154145257	T	T	154145257	1	4	38	0	1	0	0	0	0	0	0	0	16531	957	33	3		3	TPM3	1	154145257	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08	5393013	154145257	95105364	5	47292											
DCAF8	50717	broad.mit.edu	37	chr1	160194943	160194943	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatactgactgatgccccAcccccccatttgttatacca	5	16	0	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160194943	C	C	160194943	1	2	38	0	1	0	0	0	0	0	0	0	4309	174	6	5		5	DCAF8	1	160194943	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08	6049686	160194943	89055678	6	47293											
TBX19	9095	broad.mit.edu	37	chr1	168262523	168262524	+	Intron	INS	-	TGTT	TGTT													tcagaatgaggaggtaagagINStgtgtgtgtgtgtgtgtgtg					rs140890330	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGTT	168262524	TGTT	TGTT	168262523	6	5	38	0	1	1	1	0	0	0	0	0	15776	1044	36	0		0	TBX19	1	168262523	Intron	INS	-	TCGA-17-Z004-01A-01W-0746-08	8067580	168262523	80988098	7	47294											
ZNF678	339500	broad.mit.edu	37	chr1	227884807	227884807	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggcttgacttccagccAaagggttttccacattgatt	8	10	0	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227884807	T	T	227884807	1	4	38	0	1	0	0	0	0	0	0	0	18212	145	5	5		5	ZNF678	1	227884807	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08	59622284	227884807	21365814	8	47295											
USP34	9736	broad.mit.edu	37	chr2	61522202	61522202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaagtaaggcagaatggCggaagaaagaattattatag	11	2	0	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61522202	A	A	61522202	1	1	38	0	1	0	0	0	0	0	0	0	17192	783	27	3		3	USP34	2	61522202	Intron	SNP	C	TCGA-17-Z004-01A-01W-0746-08		61522202	181677171	9	47296											
ARHGAP15	55843	broad.mit.edu	37	chr2	144194513	144194513	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttgtccatcaagaaaccTggaattattcaaaatccaaa	5	8	2	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144194513	C	C	144194513	3	2	38	1	0	0	0	0	1	0	0	0	868	1580	55	5	631	5	ARHGAP15	2	144194513	Missense_Mutation	SNP	T	TCGA-17-Z004-01A-01W-0746-08	82672311	144194513	99004860	10	47297											
TM4SF20	79853	broad.mit.edu	37	chr2	228243870	228243870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggggttttgagaaaattGgtcttcctcaactaagctga	11	6	2	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228243870	T	T	228243870	3	4	38	1	0	0	0	0	1	0	0	0	16092	1357	47	2	590	2	TM4SF20	2	228243870	Missense_Mutation	SNP	G	TCGA-17-Z004-01A-01W-0746-08	84049357	228243870	14955503	11	47298											
SP140L	93349	broad.mit.edu	37	chr2	231204657	231204657	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaattttggaataggtgTggtgctgaaaaaaatgtata	12	2	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231204657	C	C	231204657	1	2	38	0	1	0	0	0	0	0	0	0	15077	1711	59	5		5	SP140L	2	231204657	Intron	SNP	T	TCGA-17-Z004-01A-01W-0746-08	2960787	231204657	11994716	12	47299											
THAP4	51078	broad.mit.edu	37	chr2	242572968	242572968	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttcgatggaggaagtggCgctctcatcgccagcatctg	12	13	2	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242572968	T	T	242572968	3	4	38	1	0	0	0	0	1	0	0	0	15969	768	27	4	1157	4	THAP4	2	242572968	Missense_Mutation	SNP	C	TCGA-17-Z004-01A-01W-0746-08	11368311	242572968	626405	13	47300											
CCR1	1230	broad.mit.edu	37	chr3	46245248	46245248	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggctttcgtgaggaaagTgaaggctgcaggtgtggtga	18	4	0	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46245248	C	C	46245248	3	2	38	1	0	0	0	0	1	0	0	0	2969	1696	59	5	514	5	CCR1	3	46245248	Missense_Mutation	SNP	T	TCGA-17-Z004-01A-01W-0746-08		46245248	151777182	14	47301											
RAD54L2	23132	broad.mit.edu	37	chr3	51679626	51679626	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcgggtggtggatgatctAaatccaatgctgaacttcac	11	8	2	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51679626	G	G	51679626	2	3	38	1	0	0	0	0	0	0	0	1	13102	349	13	5		5	RAD54L2	3	51679626	Silent	SNP	A	TCGA-17-Z004-01A-01W-0746-08	5434378	51679626	146342804	15	47302											
GSK3B	2932	broad.mit.edu	37	chr3	119641079	119641079	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggaaggaaggagggaAggaaggaaggaaggaaggaa	21	0	0	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119641079	G	G	119641079	1	3	38	0	1	0	0	0	0	0	0	0	6890	87	3	5		5	GSK3B	3	119641079	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08	67961453	119641079	78381351	16	47303											
EPHB1	2047	broad.mit.edu	37	chr3	134646739	134646739	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagtttacagtgacgagtgGgagggtcaacatggcctttg	14	7	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134646739	A	A	134646739	1	1	38	0	1	0	0	0	0	0	0	0	5216	1247	43	4		4	EPHB1	3	134646739	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08	15005660	134646739	63375691	17	47304											
SLIT2	9353	broad.mit.edu	37	chr4	20618585	20618585	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccaggcccctgggcagaaCggaaccagcttccacggctg	13	16	0	1	rs141395818		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20618585	T	T	20618585	2	4	38	1	0	0	0	0	0	0	0	1	14854	535	19	4		4	SLIT2	4	20618585	Silent	SNP	C	TCGA-17-Z004-01A-01W-0746-08		20618585	170535691	18	47305											
KLF3	51274	broad.mit.edu	37	chr4	38682227	38682227	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccaaacaccagagcacccTagaaggtttaactaaaagaa	8	10	0	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38682227	G	G	38682227	1	3	38	0	1	0	0	0	0	0	0	0	8418	1537	53	5		5	KLF3	4	38682227	5'UTR	SNP	T	TCGA-17-Z004-01A-01W-0746-08	18063642	38682227	152472049	19	47306											
CCDC158	339965	broad.mit.edu	37	chr4	77305581	77305581	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttcgtctatgaaataaaTgaaagaaaataaataacatt	4	6	1	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77305581	C	C	77305581	1	2	38	0	1	0	0	0	0	0	0	0	2817	1479	51	5		5	CCDC158	4	77305581	Intron	SNP	T	TCGA-17-Z004-01A-01W-0746-08	38623354	77305581	113848695	20	47307											
PDLIM5	10611	broad.mit.edu	37	chr4	95430979	95430979	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctttatattctagccatgTtggcagctgattagatggtg	11	6	1	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95430979	C	C	95430979	1	2	38	0	1	0	0	0	0	0	0	0	11777	1740	60	5		5	PDLIM5	4	95430979	Intron	SNP	T	TCGA-17-Z004-01A-01W-0746-08	18125398	95430979	95723297	21	47308											
RNASEN	29102	broad.mit.edu	37	chr5	31422865	31422865	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcatctaaatggtcacaTtgggactacatgagaacttt	8	9	3	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31422865	C	C	31422865	1	2	38	0	1	0	0	0	0	0	0	0	13528	1508	52	5		5	RNASEN	5	31422865	Intron	SNP	T	TCGA-17-Z004-01A-01W-0746-08		31422865	149492395	22	47309											
PDE4D	5144	broad.mit.edu	37	chr5	59064159	59064159	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcctgggggaatttctcggAgagatcactggagagagctt	15	7	2	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59064159	T	T	59064159	1	4	38	0	1	0	0	0	0	0	0	0	11736	319	11	5		5	PDE4D	5	59064159	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08	27641294	59064159	121851101	23	47310											
TTC37	9652	broad.mit.edu	37	chr5	94834211	94834211	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaactcattaagtgctgcTtttgacagtgtagcatcctg	9	8	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94834211	C	C	94834211	2	2	38	1	0	0	0	0	0	0	0	1	16831	1606	56	5		5	TTC37	5	94834211	Silent	SNP	T	TCGA-17-Z004-01A-01W-0746-08	35770052	94834211	86081049	24	47311											
SLCO4C1	353189	broad.mit.edu	37	chr5	101599390	101599390	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatagatactgccttgcctTtctcccatagcaacatcaat	4	12	2	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101599390	C	C	101599390	2	2	38	1	0	0	0	0	0	0	0	1	14844	1838	64	5		5	SLCO4C1	5	101599390	Silent	SNP	T	TCGA-17-Z004-01A-01W-0746-08	6765179	101599390	79315870	25	47312											
FAM13B	51306	broad.mit.edu	37	chr5	137304452	137304452	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggtgcgtgcatcgtgcgcGagccaaagcagggcgaggca	18	10	0	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137304452	C	C	137304452	1	2	38	0	1	0	0	0	0	0	0	0	5499	1073	37	4		4	FAM13B	5	137304452	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08	35705062	137304452	43610808	26	47313											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33052697	33052697	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggacaatctcaaattcTatttcattatttttcttcca	3	8	4	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33052697	G	G	33052697	1	3	38	0	1	0	0	0	0	0	0	0	7270	1537	53	5		5	HLA-DPB1	6	33052697	Intron	SNP	T	TCGA-17-Z004-01A-01W-0746-08		33052697	138062370	27	47314											
FOXP4	116113	broad.mit.edu	37	chr6	41553159	41553160	+	Intron	INS	-	C	C													ccagtggtaaccctcctccaINScccccccagctacaggagta							TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41553160	C	C	41553159	6	5	38	0	1	1	1	0	0	0	0	0	6089	174	6	0		0	FOXP4	6	41553159	Intron	INS	-	TCGA-17-Z004-01A-01W-0746-08	8500462	41553159	129561908	28	47315											
DNAH11	8701	broad.mit.edu	37	chr7	21912976	21912976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccacagagattacaggGttttcatgagtgctgagtct	12	7	2	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21912976	T	T	21912976	3	4	38	1	0	0	0	0	1	0	0	0	4639	1261	44	3	12368	3	DNAH11	7	21912976	Missense_Mutation	SNP	G	TCGA-17-Z004-01A-01W-0746-08		21912976	137225687	29	47316											
ELMO1	9844	broad.mit.edu	37	chr7	37220416	37220419	+	Intron	DEL	CGCA	-	-													cacatatgcacacacatatgCgcacacacacacacacacac					rs147328584		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37220419	-	-	37220416	6	5	38	0	1	1	0	1	0	0	0	0	5107	783	27	0		0	ELMO1	7	37220416	Intron	DEL	CGCA	TCGA-17-Z004-01A-01W-0746-08	15307440	37220416	121918247	30	47317											
VWC2	375567	broad.mit.edu	37	chr7	49951644	49951644	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggtccaaactgctttGcagaaaccgcggtgatccct	9	12	1	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49951644	A	A	49951644	3	1	38	1	0	0	0	0	1	0	0	0	17370	1319	46	4	851	4	VWC2	7	49951644	Missense_Mutation	SNP	G	TCGA-17-Z004-01A-01W-0746-08	12731228	49951644	109187019	31	47318											
IMMP2L	83943	broad.mit.edu	37	chr7	110785521	110785521	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaattatcggagaccaaaCaaaaggccattgctctggtc	8	9	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110785521	T	T	110785521	1	4	38	0	1	0	0	0	0	0	0	0	7787	493	17	4		4	IMMP2L	7	110785521	Intron	SNP	C	TCGA-17-Z004-01A-01W-0746-08	60833877	110785521	48353142	32	47319											
CNTNAP2	26047	broad.mit.edu	37	chr7	146864626	146864626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattataagcatgacttagaGgttcttcagacaactgctct	7	9	3	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146864626	T	T	146864626	1	4	38	0	1	0	0	0	0	0	0	0	3679	1015	35	2		2	CNTNAP2	7	146864626	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08	36079105	146864626	12274037	33	47320											
MTMR7	9108	broad.mit.edu	37	chr8	17218660	17218660	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacatcgctgagctgccagTaatgattagggaggcccatc	11	11	1	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17218660	C	C	17218660	3	2	38	1	0	0	0	0	1	0	0	0	10042	1638	57	5	1592	5	MTMR7	8	17218660	Missense_Mutation	SNP	T	TCGA-17-Z004-01A-01W-0746-08		17218660	129145362	34	47321											
PRKDC	5591	broad.mit.edu	37	chr8	48817536	48817536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatacagttgccttgtcaCctgaagaaacaataccatta	5	11	2	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48817536	A	A	48817536	3	1	38	1	0	0	0	0	1	0	0	0	12627	521	18	3	9694	3	PRKDC	8	48817536	Missense_Mutation	SNP	C	TCGA-17-Z004-01A-01W-0746-08	31598876	48817536	97546486	35	47322											
CYP11B2	1585	broad.mit.edu	37	chr8	143998981	143998981	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggcagcaggggcagggaTctgggtgttcccagcgaggg	20	9	1	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143998981	A	A	143998981	1	1	38	0	1	0	0	0	0	0	0	0	4179	1450	50	5		5	CYP11B2	8	143998981	Intron	SNP	T	TCGA-17-Z004-01A-01W-0746-08	95181445	143998981	2365041	36	47323											
ECM2	1842	broad.mit.edu	37	chr9	95274445	95274445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatgttttaggcatgtgtgCatatacatacatgtacacac	7	7	0	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95274445	T	T	95274445	1	4	38	0	1	0	0	0	0	0	0	0	4938	725	25	4		4	ECM2	9	95274445	Intron	SNP	C	TCGA-17-Z004-01A-01W-0746-08		95274445	45938986	37	47324											
MUSK	4593	broad.mit.edu	37	chr9	113445034	113445034	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtgtgcagtggaatccTacccccagcctgagatttcc	9	13	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113445034	C	C	113445034	3	2	38	1	0	0	0	0	1	0	0	0	10083	1522	53	5	166	5	MUSK	9	113445034	Missense_Mutation	SNP	T	TCGA-17-Z004-01A-01W-0746-08	18170589	113445034	27768397	38	47325											
PAPPA	5069	broad.mit.edu	37	chr9	119038047	119038047	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaatttagaagggctgaTgttttctctggcttagtaac	9	7	2	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119038047	C	C	119038047	1	2	38	0	1	0	0	0	0	0	0	0	11526	1479	51	5		5	PAPPA	9	119038047	Intron	SNP	T	TCGA-17-Z004-01A-01W-0746-08	5593013	119038047	22175384	39	47326											
CTNNA3	29119	broad.mit.edu	37	chr10	68992347	68992347	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaccatcgagactaggaaAaaactgcatcaactaacgag	8	9	1	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68992347	T	T	68992347	1	4	38	0	1	0	0	0	0	0	0	0	4048	29	1	5		5	CTNNA3	10	68992347	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08		68992347	66542400	40	47327											
OPALIN	93377	broad.mit.edu	37	chr10	98113111	98113111	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcccacctctgtcccaCttcccagggcactggcattc	9	17	1	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98113111	G	G	98113111	1	3	38	0	1	0	0	0	0	0	0	0	10967	580	20	4		4	OPALIN	10	98113111	Intron	SNP	C	TCGA-17-Z004-01A-01W-0746-08	29120764	98113111	37421636	41	47328											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1606210	1606210	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttggatcccccacaagaGccacagccccccttgcagcc	7	21	0	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1606210	A	A	1606210	2	1	38	1	0	0	0	0	0	0	0	1	8630	958	34	4		4	KRTAP5-1	11	1606210	Silent	SNP	G	TCGA-17-Z004-01A-01W-0746-08		1606210	133400306	42	47329											
ANO5	203859	broad.mit.edu	37	chr11	22297805	22297805	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttaggcagatatttctAaaggtaacctctcatcagaa	6	9	4	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22297805	G	G	22297805	1	3	38	0	1	0	0	0	0	0	0	0	700	377	13	5		5	ANO5	11	22297805	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08	20691595	22297805	112708711	43	47330											
KIAA0652	9776	broad.mit.edu	37	chr11	46671684	46671684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtcttgtgtagctccaGcgctaaatagaagaatgctg	11	7	1	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46671684	T	T	46671684	1	4	38	0	1	0	0	0	0	0	0	0	8258	986	34	3		3	KIAA0652	11	46671684	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08	24373879	46671684	88334832	44	47331											
OR8K3	219473	broad.mit.edu	37	chr11	56085955	56085955	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactccaggttgcaaacccCtatgtacttttttctcagac	7	12	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56085955	T	T	56085955	3	4	38	1	0	0	0	0	1	0	0	0	11338	681	24	4	175	4	OR8K3	11	56085955	Missense_Mutation	SNP	C	TCGA-17-Z004-01A-01W-0746-08	9414271	56085955	78920561	45	47332											
OR5A1	219982	broad.mit.edu	37	chr11	59210628	59210628	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgcatcttgtccttgtGgtccacgggaagcatgtcca	12	11	2	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59210628	C	C	59210628	1	2	38	0	1	0	0	0	0	0	0	0	11233	1363	47	4		4	OR5A1	11	59210628	5'Flank	SNP	G	TCGA-17-Z004-01A-01W-0746-08	3124673	59210628	75795888	46	47333											
FRMD8	83786	broad.mit.edu	37	chr11	65154548	65154548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgggcagcccggccccgCtgagcgatcccaccgaagca	13	18	0	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65154548	A	A	65154548	3	1	38	1	0	0	0	0	1	0	0	0	6116	797	28	3	43	3	FRMD8	11	65154548	Missense_Mutation	SNP	C	TCGA-17-Z004-01A-01W-0746-08	5943920	65154548	69851968	47	47334											
KIAA0528	9847	broad.mit.edu	37	chr12	22606881	22606881	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactgcttcattatgtaggaGacaacagcattccctcctaa	6	12	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22606881	C	C	22606881	2	2	38	1	0	0	0	0	0	0	0	1	8252	929	33	4		4	KIAA0528	12	22606881	Silent	SNP	G	TCGA-17-Z004-01A-01W-0746-08		22606881	111245014	48	47335											
OS9	10956	broad.mit.edu	37	chr12	58094274	58094274	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggttgcttctagttttcaGttcttatgccacttgcctag	8	10	3	0	rs75231257	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58094274	A	A	58094274	1	1	38	0	1	0	0	0	0	0	0	0	11366	1044	36	4		4	OS9	12	58094274	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08	35487393	58094274	75757621	49	47336											
APAF1	317	broad.mit.edu	37	chr12	99109204	99109204	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtgtttttctgctttgaaGattttagaacttgtaaacaa	7	5	1	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99109204	T	T	99109204	5	4	38	1	0	0	0	0	0	0	1	0	757	956	33	3	3040	3	APAF1	12	99109204	Splice_Site	SNP	G	TCGA-17-Z004-01A-01W-0746-08	41014930	99109204	34742691	50	47337											
STAB2	55576	broad.mit.edu	37	chr12	104100638	104100638	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagggaatgcccagaatgtCtgctttggtaatggcatctg	12	9	2	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104100638	G	G	104100638	2	3	38	1	0	0	0	0	0	0	0	1	15356	900	32	4		4	STAB2	12	104100638	Silent	SNP	C	TCGA-17-Z004-01A-01W-0746-08	4991434	104100638	29751257	51	47338											
B3GALTL	145173	broad.mit.edu	37	chr13	31782917	31782917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcacacatctcaacaggGcattccctccttaaaacctc	6	15	1	0			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31782917	A	A	31782917	1	1	38	0	1	0	0	0	0	0	0	0	1257	1218	42	4		4	B3GALTL	13	31782917	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08		31782917	83386961	52	47339											
FAM155A	728215	broad.mit.edu	37	chr13	108470201	108470202	+	Intron	INS	-	C	C													tgcaatctggcttccatttgINStttatttgcatcatagtagc					rs72523054	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108470202	C	C	108470201	6	5	38	0	1	1	1	0	0	0	0	0	5511	1392	48	0		0	FAM155A	13	108470201	Intron	INS	-	TCGA-17-Z004-01A-01W-0746-08	76687284	108470201	6699677	53	47340											
ADAM21	8747	broad.mit.edu	37	chr14	70926405	70926405	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaatgtctctaacttaaTattccatgcattagtacact	4	8	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70926405	C	C	70926405	1	2	38	0	1	0	0	0	0	0	0	0	243	1421	49	5		5	ADAM21	14	70926405	3'UTR	SNP	T	TCGA-17-Z004-01A-01W-0746-08		70926405	36423135	54	47341											
AHNAK2	113146	broad.mit.edu	37	chr14	105418903	105418903	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacatccacctccatgctgGgcagagacacctcgccatcg	10	16	0	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105418903	C	C	105418903	3	2	38	1	0	0	0	0	1	0	0	0	415	1232	43	4	14506	4	AHNAK2	14	105418903	Missense_Mutation	SNP	G	TCGA-17-Z004-01A-01W-0746-08	34492498	105418903	1930637	55	47342											
LEO1	123169	broad.mit.edu	37	chr15	52250920	52250920	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttataaaagaaaaaaaaggAaaaagcatgaaatggtacct	7	3	0	2			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52250920	G	G	52250920	1	3	38	0	1	0	0	0	0	0	0	0	8798	261	9	5		5	LEO1	15	52250920	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08		52250920	50280472	56	47343											
TUFM	7284	broad.mit.edu	37	chr16	28856763	28856763	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggggcattgtcaatctcctCgtacttcttgaacttagccc	8	13	3	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28856763	T	T	28856763	3	4	38	1	0	0	0	0	1	0	0	0	16897	893	31	4	1113	4	TUFM	16	28856763	Missense_Mutation	SNP	C	TCGA-17-Z004-01A-01W-0746-08		28856763	61497990	57	47344											
CCDC113	29070	broad.mit.edu	37	chr16	58301478	58301478	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattgaaaaagaaacactAcaagtagaggaggtaggaga	11	3	0	4			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58301478	G	G	58301478	2	3	38	1	0	0	0	0	0	0	0	1	2776	378	14	5		5	CCDC113	16	58301478	Silent	SNP	A	TCGA-17-Z004-01A-01W-0746-08	29444715	58301478	32053275	58	47345											
ABR	29	broad.mit.edu	37	chr17	995058	995058	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggtgagcacgggctgggaGgtggtggcggtggccttcag	21	7	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	995058	C	C	995058	2	2	38	1	0	0	0	0	0	0	0	1	99	987	35	4		4	ABR	17	995058	Silent	SNP	G	TCGA-17-Z004-01A-01W-0746-08		995058	80200152	59	47346											
TRPV1	7442	broad.mit.edu	37	chr17	3475527	3475527	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagctcttctccgtgtccAggatggtgatggctctctgc	13	11	3	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3475527	C	C	3475527	3	2	38	1	0	0	0	0	1	0	0	0	16720	188	7	5	411	5	TRPV1	17	3475527	Missense_Mutation	SNP	A	TCGA-17-Z004-01A-01W-0746-08	2480469	3475527	77719683	60	47347											
TBC1D29	26083	broad.mit.edu	37	chr17	28887555	28887555	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccctcatggggaaggtcaGtgaagccccaatgggctagc	14	11	2	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28887555	C	C	28887555	1	2	38	0	1	0	0	0	0	0	0	0	15737	1044	36	4		4	TBC1D29	17	28887555	Intron	SNP	G	TCGA-17-Z004-01A-01W-0746-08	25412028	28887555	52307655	61	47348											
SDK2	54549	broad.mit.edu	37	chr17	71357719	71357720	+	Intron	DEL	CT	-	-													agagtgagctctgtcctccaCtctgtttccagggtccagca					rs35151121		TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71357720	-	-	71357719	6	5	38	0	1	1	0	1	0	0	0	0	14082	580	20	0		0	SDK2	17	71357719	Intron	DEL	CT	TCGA-17-Z004-01A-01W-0746-08	42470164	71357719	9837491	62	47349											
DSG2	1829	broad.mit.edu	37	chr18	29104963	29104963	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatattcaattaactagcActacagttgtttgagaaagg	7	6	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29104963	G	G	29104963	1	3	38	0	1	0	0	0	0	0	0	0	4817	174	6	5		5	DSG2	18	29104963	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08		29104963	48972285	63	47350											
ZNF407	55628	broad.mit.edu	37	chr18	72344029	72344029	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgaaatgatgccttccAgaaatactttgtcacaggaa	8	7	1	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72344029	T	T	72344029	4	4	38	1	0	0	0	0	0	1	0	0	18014	180	7	5	1056	5	ZNF407	18	72344029	Nonsense_Mutation	SNP	A	TCGA-17-Z004-01A-01W-0746-08	43239066	72344029	5733219	64	47351											
ZNF177	7730	broad.mit.edu	37	chr19	9480333	9480334	+	Intron	INS	-	T	T													tgtgcttttcatttgacctaINSttttttttgtttcatttccc					rs140117319	by1000genomes	TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9480334	T	T	9480333	6	5	38	0	1	1	1	0	0	0	0	0	17872	464	16	0		0	ZNF177	19	9480333	Intron	INS	-	TCGA-17-Z004-01A-01W-0746-08		9480333	49648650	65	47352											
PCP4	5121	broad.mit.edu	37	chr21	41292485	41292485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgatctaaccatgatgaCgtgagcaatgacctttcatc	7	10	2	5			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41292485	A	A	41292485	1	1	38	0	1	0	0	0	0	0	0	0	11692	551	19	3		3	PCP4	21	41292485	Intron	SNP	C	TCGA-17-Z004-01A-01W-0746-08		41292485	6837410	66	47353											
SMC1B	27127	broad.mit.edu	37	chr22	45754538	45754538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagatttaaatattccgtAttactgtgagtgataaacaa	7	4	0	3			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45754538	G	G	45754538	1	3	38	0	1	0	0	0	0	0	0	0	14896	464	16	5		5	SMC1B	22	45754538	Intron	SNP	A	TCGA-17-Z004-01A-01W-0746-08		45754538	5550028	67	47354											
SBF1	6305	broad.mit.edu	37	chr22	50904394	50904394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatggtgcccctcaccatgCtcagcacactgtgcgtctga	9	16	3	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50904394	T	T	50904394	3	4	38	1	0	0	0	0	1	0	0	0	13970	797	28	4	4806	4	SBF1	22	50904394	Missense_Mutation	SNP	C	TCGA-17-Z004-01A-01W-0746-08	5149856	50904394	400172	68	47355											
ZNF157	7712	broad.mit.edu	37	chrX	47271877	47271877	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattggatcaaaatgttgaAtataatggatgcaggaaagc	10	4	1	1			TCGA-17-Z004-01A-01W-0746-08	TCGA-17-Z004-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47271877	G	G	47271877	2	3	38	1	0	0	0	0	0	0	0	1	17863	98	4	5		5	ZNF157	23	47271877	Silent	SNP	A	TCGA-17-Z004-01A-01W-0746-08		47271877	107998683	69	47356											
NPHP4	261734	broad.mit.edu	37	chr1	5964965	5964965	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtccaggcaccttagtcGctggggaacagtaaagaggc	14	9	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5964965	A	A	5964965	1	1	39	0	1	0	0	0	0	0	0	0	10676	1102	38	4		4	NPHP4	1	5964965	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08		5964965	243285656	1	47357											
CAMTA1	23261	broad.mit.edu	37	chr1	7252320	7252320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcatctttctccactttGgggtcaaggtttgacaagct	9	10	4	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7252320	T	T	7252320	1	4	39	0	1	0	0	0	0	0	0	0	2639	1363	47	2		2	CAMTA1	1	7252320	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1287355	7252320	241998301	2	47358											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17958663	17958663	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcttcctccccagtgcatCttgtcacccagggatggagg	12	13	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17958663	A	A	17958663	1	1	39	0	1	0	0	0	0	0	0	0	897	928	32	3		3	ARHGEF10L	1	17958663	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	10706343	17958663	231291958	3	47359											
DDOST	1650	broad.mit.edu	37	chr1	20981967	20981967	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggatgggatttagagatgAtttcccaacgatggttgggg	16	4	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20981967	G	G	20981967	3	3	39	1	0	0	0	0	1	0	0	0	4368	333	12	5	830	5	DDOST	1	20981967	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	3023304	20981967	228268654	4	47360											
HSPG2	3339	broad.mit.edu	37	chr1	22213794	22213794	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaatgtccattcccgcagGggaactcgttgggctcacag	11	13	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22213794	A	A	22213794	3	1	39	1	0	0	0	0	1	0	0	0	7500	1232	43	4	12539	4	HSPG2	1	22213794	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1231827	22213794	227036827	5	47361											
HMGCL	3155	broad.mit.edu	37	chr1	24130758	24130758	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacaggcatgagccactgcGcctggctaaccctttccctc	8	16	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24130758	A	A	24130758	1	1	39	0	1	0	0	0	0	0	0	0	7296	1102	38	4		4	HMGCL	1	24130758	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1916964	24130758	225119863	6	47362											
EPB41	2035	broad.mit.edu	37	chr1	29442075	29442075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaggtaattatcagcttGgcttagcctaaagctgccct	10	9	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29442075	T	T	29442075	1	4	39	0	1	0	0	0	0	0	0	0	5193	1363	47	2		2	EPB41	1	29442075	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	5311317	29442075	219808546	7	47363											
CSMD2	114784	broad.mit.edu	37	chr1	34117867	34117867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacctggagacccaggtccCagagcccctagccactctga	9	17	2	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34117867	T	T	34117867	1	4	39	0	1	0	0	0	0	0	0	0	3979	609	21	4		4	CSMD2	1	34117867	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	4675792	34117867	215132754	8	47364											
ST3GAL3	6487	broad.mit.edu	37	chr1	44283438	44283439	+	Intron	INS	-	TCTTTC	TCTTTC													cttcctcctcttcttcctctINStcttcttctcctccttcttc					rs151085469	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCTTTC	44283439	TCTTTC	TCTTTC	44283438	6	5	39	0	1	1	1	0	0	0	0	0	15334	1624	56	0		0	ST3GAL3	1	44283438	Intron	INS	-	TCGA-17-Z005-01A-01W-0746-08	10165571	44283438	204967183	9	47365											
RNF220	55182	broad.mit.edu	37	chr1	45054302	45054302	+	Intron	DEL	T	-	-													taattaacatttaatgccccTggttggtgctggtagctggg					rs34784454		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45054302	-	-	45054302	6	5	39	0	1	1	0	1	0	0	0	0	13594	1595	55	0		0	RNF220	1	45054302	Intron	DEL	T	TCGA-17-Z005-01A-01W-0746-08	770864	45054302	204196319	10	47366											
ROR1	4919	broad.mit.edu	37	chr1	64644284	64644284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actgcccacctcccaagagtCggtccccaagcagtgccagt	9	17	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64644284	G	G	64644284	3	3	39	1	0	0	0	0	1	0	0	0	13637	875	31	4	2602	4	ROR1	1	64644284	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	19589982	64644284	184606337	11	47367											
SGIP1	84251	broad.mit.edu	37	chr1	67199336	67199336	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaattgtcaaaaaatggcTgtacatatcagacgacaatt	6	7	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67199336	A	A	67199336	1	1	39	0	1	0	0	0	0	0	0	0	14319	1595	55	5		5	SGIP1	1	67199336	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	2555052	67199336	182051285	12	47368											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76771502	76771502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatataatctcagttttccAgacaaagaaatagaggcata	6	6	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76771502	T	T	76771502	1	4	39	0	1	0	0	0	0	0	0	0	15343	203	7	5		5	ST6GALNAC3	1	76771502	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	9572166	76771502	172479119	13	47369											
LPHN2	23266	broad.mit.edu	37	chr1	82452669	82452669	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacacattgctcgctgaaaCagttgtatgtaatgcccctt	7	10	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82452669	T	T	82452669	1	4	39	0	1	0	0	0	0	0	0	0	9003	493	17	4		4	LPHN2	1	82452669	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	5681167	82452669	166797952	14	47370											
CDC7	8317	broad.mit.edu	37	chr1	91978900	91978900	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttaagtaccgacactgTtttagaaatatactccttca	4	9	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91978900	C	C	91978900	1	2	39	0	1	0	0	0	0	0	0	0	3114	1740	60	5		5	CDC7	1	91978900	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	9526231	91978900	157271721	15	47371											
KCND3	3752	broad.mit.edu	37	chr1	112525025	112525025	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtaggcagagatgcactcGtagcgcgggtagtgcagctt	15	9	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112525025	A	A	112525025	2	1	39	1	0	0	0	0	0	0	0	1	8090	1140	40	4		4	KCND3	1	112525025	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	20546125	112525025	136725596	16	47372											
LRIG2	9860	broad.mit.edu	37	chr1	113658959	113658959	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctacttgtcttcccaaggaAcgctgtctgagccacaggaa	10	12	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113658959	G	G	113658959	3	3	39	1	0	0	0	0	1	0	0	0	9032	43	2	5	2643	5	LRIG2	1	113658959	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	1133934	113658959	135591662	17	47373											
CD2	914	broad.mit.edu	37	chr1	117311024	117311024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccttgcatataaaaggtaCtcaatatttacattgatttc	5	8	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117311024	A	A	117311024	1	1	39	0	1	0	0	0	0	0	0	0	3009	580	20	3		3	CD2	1	117311024	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	3652065	117311024	131939597	18	47374											
PDE4DIP	9659	broad.mit.edu	37	chr1	144992683	144992683	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacttggcaatatccttcttGacacgtggcagctccaatga	8	12	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144992683	C	C	144992683	1	2	39	0	1	0	0	0	0	0	0	0	11737	1305	45	4		4	PDE4DIP	1	144992683	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	27681659	144992683	104257938	19	47375											
NBPF10	100132406	broad.mit.edu	37	chr1	145262246	145262246	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgtgaatcaacagcttTaaagtccgtaccacttcagc	7	11	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145262246	A	A	145262246	1	1	39	0	1	0	0	0	0	0	0	0	10287	1769	61	5		5	NBPF10	1	145262246	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	269563	145262246	103988375	20	47376											
ZNF687	57592	broad.mit.edu	37	chr1	151260766	151260766	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccgcctgctgccccggccAcctctgcttacacatgcttt	8	18	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151260766	T	T	151260766	3	4	39	1	0	0	0	0	1	0	0	0	18219	159	6	5	2001	5	ZNF687	1	151260766	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	5998520	151260766	97989855	21	47377											
PI4KB	5298	broad.mit.edu	37	chr1	151280330	151280330	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaaccatagaatacaaTggcacacccactcagtcact	6	12	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151280330	C	C	151280330	1	2	39	0	1	0	0	0	0	0	0	0	11969	1479	51	5		5	PI4KB	1	151280330	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	19564	151280330	97970291	22	47378											
CELF3	11189	broad.mit.edu	37	chr1	151678659	151678659	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagggagtccccaagcccAtaacgagggcattcctgtct	11	13	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151678659	G	G	151678659	1	3	39	0	1	0	0	0	0	0	0	0	3247	232	8	5		5	CELF3	1	151678659	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	398329	151678659	97571962	23	47379											
FLG	2312	broad.mit.edu	37	chr1	152283735	152283735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttctggatcctgactgCccatgggaggcatcagacct	11	13	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283735	A	A	152283735	2	1	39	1	0	0	0	0	0	0	0	1	5979	726	26	3		3	FLG	1	152283735	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	605076	152283735	96966886	24	47380											
S100A7L2	645922	broad.mit.edu	37	chr1	153410770	153410770	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcgaaacatcgcgactatGtccaacatgactttctcacc	7	13	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153410770	A	A	153410770	2	1	39	1	0	0	0	0	0	0	0	1	13896	1368	48	4		4	S100A7L2	1	153410770	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1127035	153410770	95839851	25	47381											
JTB	10899	broad.mit.edu	37	chr1	153949766	153949766	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgtcggaacagagggacCtactccacaggcctcgtgcc	11	15	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153949766	G	G	153949766	1	3	39	0	1	0	0	0	0	0	0	0	8037	696	24	4		4	JTB	1	153949766	5'UTR	SNP	C	TCGA-17-Z005-01A-01W-0746-08	538996	153949766	95300855	26	47382											
RAB25	57111	broad.mit.edu	37	chr1	156038266	156038266	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcgctggtgagagcctgCcactacccaggctgactcct	11	14	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156038266	T	T	156038266	1	4	39	0	1	0	0	0	0	0	0	0	13020	754	26	4		4	RAB25	1	156038266	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2088500	156038266	93212355	27	47383											
VSIG8	391123	broad.mit.edu	37	chr1	159826194	159826194	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaggaaaggggctgggaGcccccactggcaaatggatg	16	8	0	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159826194	A	A	159826194	1	1	39	0	1	0	0	0	0	0	0	0	17353	986	34	4		4	VSIG8	1	159826194	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	3787928	159826194	89424427	28	47384											
FCGR3A	2214	broad.mit.edu	37	chr1	161512794	161512794	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctcttattacccccatggGatgggggtcatttgtcttga	11	9	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161512794	T	T	161512794	1	4	39	0	1	0	0	0	0	0	0	0	5841	1189	41	3		3	FCGR3A	1	161512794	3'UTR	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1686600	161512794	87737827	29	47385											
FCRLB	127943	broad.mit.edu	37	chr1	161691663	161691663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagttctggaactggggCgtggctggggaggggttgca	21	6	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161691663	A	A	161691663	1	1	39	0	1	0	0	0	0	0	0	0	5858	783	27	3		3	FCRLB	1	161691663	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	178869	161691663	87558958	30	47386											
POU2F1	5451	broad.mit.edu	37	chr1	167341161	167341161	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccccacctcagtctaaatCtaatgaagaatcgggggatt	8	11	3	2	rs144698259	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167341161	T	T	167341161	3	4	39	1	0	0	0	0	1	0	0	0	12367	913	32	4	235	4	POU2F1	1	167341161	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	5649498	167341161	81909460	31	47387											
BLZF1	8548	broad.mit.edu	37	chr1	169338766	169338766	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttaaggtgaaaaaatgacTactaaaaatttagaaaccaa	7	4	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169338766	C	C	169338766	2	2	39	1	0	0	0	0	0	0	0	1	1459	1509	53	5		5	BLZF1	1	169338766	Silent	SNP	T	TCGA-17-Z005-01A-01W-0746-08	1997605	169338766	79911855	32	47388											
BLZF1	8548	broad.mit.edu	37	chr1	169351647	169351647	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaccactcatgctattgAgtgtgttatcttggagaaaa	8	7	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169351647	G	G	169351647	1	3	39	0	1	0	0	0	0	0	0	0	1459	319	11	5		5	BLZF1	1	169351647	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	12881	169351647	79898974	33	47389											
TNR	7143	broad.mit.edu	37	chr1	175452957	175452957	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctctgaggctagagggctCttggaggctagccttttggt	14	8	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175452957	A	A	175452957	1	1	39	0	1	0	0	0	0	0	0	0	16461	928	32	3		3	TNR	1	175452957	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	6101310	175452957	73797664	34	47390											
HMCN1	83872	broad.mit.edu	37	chr1	185976334	185976334	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatttaaagaatgcacggaGaaatgacaaggggcgctacc	11	8	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185976334	T	T	185976334	3	4	39	1	0	0	0	0	1	0	0	0	7287	942	33	3	4668	3	HMCN1	1	185976334	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	10523377	185976334	63274287	35	47391											
IL19	29949	broad.mit.edu	37	chr1	207010430	207010430	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctaaatggctctgggctGagaaagaaatccctaccttg	10	9	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207010430	A	A	207010430	1	1	39	0	1	0	0	0	0	0	0	0	7719	1305	45	4		4	IL19	1	207010430	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	21034096	207010430	42240191	36	47392											
FAIM3	9214	broad.mit.edu	37	chr1	207097843	207097843	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtggtgtgtggctatgTgtgtgtgctatgtgttgtgt	17	2	0	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207097843	A	A	207097843	1	1	39	0	1	0	0	0	0	0	0	0	5423	1711	59	5		5	FAIM3	1	207097843	5'Flank	SNP	T	TCGA-17-Z005-01A-01W-0746-08	87413	207097843	42152778	37	47393											
USH2A	7399	broad.mit.edu	37	chr1	215914876	215914876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctactgctaactccacaaCttccttgaaaaaaaaaaaat	2	11	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215914876	A	A	215914876	3	1	39	1	0	0	0	0	1	0	0	0	17162	565	20	3	4108	3	USH2A	1	215914876	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	8817033	215914876	33335745	38	47394											
LBR	3930	broad.mit.edu	37	chr1	225594529	225594529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtccatggtcgtcaacaaCgcttcctataaggatacaga	8	10	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225594529	A	A	225594529	2	1	39	1	0	0	0	0	0	0	0	1	8724	523	19	3		3	LBR	1	225594529	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	9679653	225594529	23656092	39	47395											
OBSCN	84033	broad.mit.edu	37	chr1	228466462	228466462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccgcggtgtgctggagtGtcaggtgtcccgggccagcg	18	12	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228466462	T	T	228466462	3	4	39	1	0	0	0	0	1	0	0	0	10907	1377	48	3	7030	3	OBSCN	1	228466462	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	2871933	228466462	20784159	40	47396											
TRIM58	25893	broad.mit.edu	37	chr1	248039392	248039392	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggaggttctggtgggagaAggagcagagtggggtttagg	22	2	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248039392	T	T	248039392	3	4	39	1	0	0	0	0	1	0	0	0	16656	69	3	5	1084	5	TRIM58	1	248039392	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	19572930	248039392	1211229	41	47397											
OR2T1	26696	broad.mit.edu	37	chr1	248569265	248569265	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttatttaaaaaccttctGgaatagagtaaatgctagat	6	4	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248569265	T	T	248569265	1	4	39	0	1	0	0	0	0	0	0	0	11110	1363	47	2		2	OR2T1	1	248569265	5'Flank	SNP	G	TCGA-17-Z005-01A-01W-0746-08	529873	248569265	681356	42	47398											
MYT1L	23040	broad.mit.edu	37	chr2	1921222	1921222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaataaagcaggtgtcGggggctaggctgtgacatca	14	6	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1921222	T	T	1921222	1	4	39	0	1	0	0	0	0	0	0	0	10201	1131	39	1		1	MYT1L	2	1921222	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08		1921222	241278151	43	47399											
FAM49A	81553	broad.mit.edu	37	chr2	16740591	16740591	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacatcttgctgtgaggaCagctgccaggatgggctgtg	16	8	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16740591	T	T	16740591	1	4	39	0	1	0	0	0	0	0	0	0	5626	493	17	4		4	FAM49A	2	16740591	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	14819369	16740591	226458782	44	47400											
FAM49A	81553	broad.mit.edu	37	chr2	16793550	16793550	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactacttagaaagaaagagGgaaggaaaggagggcatgtg	15	3	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16793550	A	A	16793550	1	1	39	0	1	0	0	0	0	0	0	0	5626	1247	43	4		4	FAM49A	2	16793550	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	52959	16793550	226405823	45	47401											
EHD3	30845	broad.mit.edu	37	chr2	31483823	31483823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggtgggcagcttgggCaggggcccagagtttggggt	22	6	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31483823	A	A	31483823	1	1	39	0	1	0	0	0	0	0	0	0	5019	725	25	3		3	EHD3	2	31483823	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	14690273	31483823	211715550	46	47402											
LTBP1	4052	broad.mit.edu	37	chr2	33196721	33196721	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgataaagcctacttgattgTggtagattaaatttttgatg	9	4	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33196721	C	C	33196721	1	2	39	0	1	0	0	0	0	0	0	0	9160	1711	59	5		5	LTBP1	2	33196721	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	1712898	33196721	210002652	47	47403											
VIT	5212	broad.mit.edu	37	chr2	37028643	37028643	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatataaaaggaaaaaataaTaataatccgtcaagaaataa	4	3	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37028643	C	C	37028643	1	2	39	0	1	0	0	0	0	0	0	0	17298	1421	49	5		5	VIT	2	37028643	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	3831922	37028643	206170730	48	47404											
SLC8A1	6546	broad.mit.edu	37	chr2	40366504	40366504	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaaggcaaatgaacttcTgctactgggggaattataca	10	7	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40366504	A	A	40366504	1	1	39	0	1	0	0	0	0	0	0	0	14820	1595	55	5		5	SLC8A1	2	40366504	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	3337861	40366504	202832869	49	47405											
ANTXR1	84168	broad.mit.edu	37	chr2	69366299	69366299	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttctactctgtgcctttGatcacatttcattttccttc	3	12	4	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69366299	T	T	69366299	1	4	39	0	1	0	0	0	0	0	0	0	711	1305	45	3		3	ANTXR1	2	69366299	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	28999795	69366299	173833074	50	47406											
DYSF	8291	broad.mit.edu	37	chr2	71864642	71864642	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagagggccagtgtggcaggTggtatcaggagaaggggcga	21	5	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71864642	G	G	71864642	1	3	39	0	1	0	0	0	0	0	0	0	4899	1711	59	5		5	DYSF	2	71864642	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	2498343	71864642	171334731	51	47407											
REG1B	5968	broad.mit.edu	37	chr2	79314126	79314126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggctggaaggtgaattaGgggcttcttggtgtccttta	14	5	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79314126	T	T	79314126	1	4	39	0	1	0	0	0	0	0	0	0	13319	1015	35	2		2	REG1B	2	79314126	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	7449484	79314126	163885247	52	47408											
CTNNA2	1496	broad.mit.edu	37	chr2	80801158	80801158	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattgggctcacttcaaaCtggacagatgagtgtcttgc	10	8	3	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80801158	A	A	80801158	1	1	39	0	1	0	0	0	0	0	0	0	4047	580	20	3		3	CTNNA2	2	80801158	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1487032	80801158	162398215	53	47409											
VWA3B	200403	broad.mit.edu	37	chr2	98828388	98828388	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttggtgtctcttttttcCgtagattggaagctccacaa	8	10	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98828388	T	T	98828388	1	4	39	0	1	0	0	0	0	0	0	0	17368	667	23	4		4	VWA3B	2	98828388	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	18027230	98828388	144370985	54	47410											
WDR33	55339	broad.mit.edu	37	chr2	128484356	128484356	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acatcagcaccatgccctgtCggaaacaagttaggattaaa	8	10	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128484356	A	A	128484356	1	1	39	0	1	0	0	0	0	0	0	0	17414	899	31	3		3	WDR33	2	128484356	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	29655968	128484356	114715017	55	47411											
NCKAP5	344148	broad.mit.edu	37	chr2	133636213	133636213	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacAcacacacacacacacgcacg	2	20	0	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133636213	G	G	133636213	1	3	39	0	1	0	0	0	0	0	0	0	10318	174	6	5		5	NCKAP5	2	133636213	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	5151857	133636213	109563160	56	47412											
THSD7B	80731	broad.mit.edu	37	chr2	137928197	137928197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacacatcaagataatacGtgcttagagcgatgagtact	8	7	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137928197	T	T	137928197	1	4	39	0	1	0	0	0	0	0	0	0	16003	1160	40	3		3	THSD7B	2	137928197	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	4291984	137928197	105271176	57	47413											
LRP1B	53353	broad.mit.edu	37	chr2	141027872	141027873	+	Missense_Mutation	DNP	CA	AT	AT													gccaccattgtaacagtagcCatcacataactgacagctag							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	141027873	AT	AT	141027872	3	1	39	1	0	0	0	0	1	0	0	0	9042	594	21	2	637	2	LRP1B	2	141027872	Missense_Mutation	DNP	CA	TCGA-17-Z005-01A-01W-0746-08	3099675	141027872	102171501	58	47414											
XIRP2	129446	broad.mit.edu	37	chr2	168100767	168100767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatatctttgaatcaaaCaatttaattaaatttgatgc	3	6	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168100767	A	A	168100767	3	1	39	1	0	0	0	0	1	0	0	0	17557	477	17	3	2895	3	XIRP2	2	168100767	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	27072895	168100767	75098606	59	47415											
SP3	6670	broad.mit.edu	37	chr2	174783494	174783494	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactcttcaggatcaggttcTtcttccttgatcctaatatc	5	12	5	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174783494	A	A	174783494	3	1	39	1	0	0	0	0	1	0	0	0	15079	1606	56	5	698	5	SP3	2	174783494	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	6682727	174783494	68415879	60	47416											
TTN	7273	broad.mit.edu	37	chr2	179458092	179458092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagtttctctcttttccaGgatgtagtttgtgatgggtt	10	6	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179458092	T	T	179458092	3	4	39	1	0	0	0	0	1	0	0	0	16861	991	35	2	49392	2	TTN	2	179458092	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	4674598	179458092	63741281	61	47417											
TTN	7273	broad.mit.edu	37	chr2	179578798	179578798	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttttccatccttaaaccActtagtactgagttcagggg	7	11	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179578798	T	T	179578798	3	4	39	1	0	0	0	0	1	0	0	0	16861	159	6	5	78026	5	TTN	2	179578798	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	120706	179578798	63620575	62	47418											
COL3A1	1281	broad.mit.edu	37	chr2	189850488	189850488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggaatctgtgaatcatGccctactggtcctcaggtat	9	12	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189850488	T	T	189850488	3	4	39	1	0	0	0	0	1	0	0	0	3720	1319	46	3	445	3	COL3A1	2	189850488	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	10271690	189850488	53348885	63	47419											
PMS1	5378	broad.mit.edu	37	chr2	190738192	190738192	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttctggaatatgaacttAactatgtgtttttatttttt	6	3	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190738192	T	T	190738192	1	4	39	0	1	0	0	0	0	0	0	0	12237	377	13	5		5	PMS1	2	190738192	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	887704	190738192	52461181	64	47420											
SLC19A3	80704	broad.mit.edu	37	chr2	228560708	228560708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgagaaataaagaaccggCattgacaactgagaagacca	9	8	0	5			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228560708	A	A	228560708	3	1	39	1	0	0	0	0	1	0	0	0	14543	710	25	3	433	3	SLC19A3	2	228560708	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	37822516	228560708	14638665	65	47421											
SPHKAP	80309	broad.mit.edu	37	chr2	228855814	228855814	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggctcggagctcggcatCtggacactctggctccaggt	14	12	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228855814	A	A	228855814	3	1	39	1	0	0	0	0	1	0	0	0	15166	913	32	3	249	3	SPHKAP	2	228855814	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	295106	228855814	14343559	66	47422											
SP140	11262	broad.mit.edu	37	chr2	231090581	231090581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcccagcagggccagcagGggcagatggcaagtggagac	18	10	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231090581	T	T	231090581	3	4	39	1	0	0	0	0	1	0	0	0	15076	1232	43	2	24	2	SP140	2	231090581	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	2234767	231090581	12108792	67	47423											
ITPR1	3708	broad.mit.edu	37	chr3	4650290	4650290	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgattgttagaactagggagTggggtgctactgatagccaa	14	5	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4650290	A	A	4650290	1	1	39	0	1	0	0	0	0	0	0	0	7990	1711	59	5		5	ITPR1	3	4650290	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08		4650290	193372140	68	47424											
DCLK3	85443	broad.mit.edu	37	chr3	36779132	36779132	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccatgggccgtggcttcCgaccgctgggccgctctggc	15	16	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36779132	T	T	36779132	3	4	39	1	0	0	0	0	1	0	0	0	4326	652	23	4	943	4	DCLK3	3	36779132	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	32128842	36779132	161243298	69	47425											
BSN	8927	broad.mit.edu	37	chr3	49689125	49689125	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacagctggacagtgcaggGgtgacagggccacatccacc	14	12	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49689125	T	T	49689125	2	4	39	1	0	0	0	0	0	0	0	1	1539	1219	43	2		2	BSN	3	49689125	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	12909993	49689125	148333305	70	47426											
ERC2	26059	broad.mit.edu	37	chr3	55991425	55991425	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcattaggggatggggaCatgaaatgatttaataaacc	10	5	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55991425	T	T	55991425	1	4	39	0	1	0	0	0	0	0	0	0	5253	493	17	4		4	ERC2	3	55991425	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	6302300	55991425	142031005	71	47427											
ROBO2	6092	broad.mit.edu	37	chr3	77626672	77626672	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccacagtctgtcactgtActgacagttggaagctacaa	8	12	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77626672	C	C	77626672	2	2	39	1	0	0	0	0	0	0	0	1	13625	378	14	5		5	ROBO2	3	77626672	Silent	SNP	A	TCGA-17-Z005-01A-01W-0746-08	21635247	77626672	120395758	72	47428											
GAP43	2596	broad.mit.edu	37	chr3	115369367	115369367	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttctctttccctcccatAccatctcctatttctctgtt	1	16	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115369367	T	T	115369367	1	4	39	0	1	0	0	0	0	0	0	0	6297	406	14	5		5	GAP43	3	115369367	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	37742695	115369367	82653063	73	47429											
NR1I2	8856	broad.mit.edu	37	chr3	119534079	119534079	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggcagggcaggaagatGgaatggtggaaaacaagata	17	3	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119534079	A	A	119534079	1	1	39	0	1	0	0	0	0	0	0	0	10715	1363	47	4		4	NR1I2	3	119534079	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	4164712	119534079	78488351	74	47430											
SLC9A9	285195	broad.mit.edu	37	chr3	143344135	143344135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatatggagccaaaaaagaGcccgcattgccaagtcaatc	8	11	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143344135	C	C	143344135	1	2	39	0	1	0	0	0	0	0	0	0	14835	986	34	4		4	SLC9A9	3	143344135	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	23810056	143344135	54678295	75	47431											
ST6GAL1	6480	broad.mit.edu	37	chr3	186754531	186754531	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcaataataaacactgggGactacaagacggggaaggct	13	7	0	1	rs78728252	byFrequency;by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186754531	T	T	186754531	1	4	39	0	1	0	0	0	0	0	0	0	15339	1189	41	3		3	ST6GAL1	3	186754531	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	43410396	186754531	11267899	76	47432											
CYTL1	54360	broad.mit.edu	37	chr4	5018480	5018480	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcttccttgtcaccatctCctcccaactctcctctttga	2	19	5	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5018480	T	T	5018480	1	4	39	0	1	0	0	0	0	0	0	0	4241	870	30	4		4	CYTL1	4	5018480	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08		5018480	186135796	77	47433											
CHRNA9	55584	broad.mit.edu	37	chr4	40339210	40339210	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgctaggtaaagcgacatCtggattcattgtgtaggatg	12	6	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40339210	G	G	40339210	1	3	39	0	1	0	0	0	0	0	0	0	3420	928	32	4		4	CHRNA9	4	40339210	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	35320730	40339210	150815066	78	47434											
SLC30A9	10463	broad.mit.edu	37	chr4	42026119	42026119	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttacagaagggtctattaaCtcagctacattaattaattc	5	7	2	1	rs114761140	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42026119	G	G	42026119	1	3	39	0	1	0	0	0	0	0	0	0	14676	580	20	4		4	SLC30A9	4	42026119	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1686909	42026119	149128157	79	47435											
LPHN3	23284	broad.mit.edu	37	chr4	62862220	62862220	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataattcaagcaattaaacaCtcattatagtctacttttat	2	7	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62862220	G	G	62862220	1	3	39	0	1	0	0	0	0	0	0	0	9004	580	20	4		4	LPHN3	4	62862220	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	20836101	62862220	128292056	80	47436											
WDFY3	23001	broad.mit.edu	37	chr4	85752722	85752722	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctttctgagccagctcctCcgcaggggaaacaaaactgc	9	13	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85752722	A	A	85752722	4	1	39	1	0	0	0	0	0	1	0	0	17397	864	30	3	10254	3	WDFY3	4	85752722	Nonsense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	22890502	85752722	105401554	81	47437											
DMP1	1758	broad.mit.edu	37	chr4	88577620	88577620	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaacatctatgtccttcattCcaggtagaggtatcacaccc	6	12	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88577620	A	A	88577620	1	1	39	0	1	0	0	0	0	0	0	0	4623	870	30	3		3	DMP1	4	88577620	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2824898	88577620	102576656	82	47438											
C4orf37	285555	broad.mit.edu	37	chr4	98761871	98761871	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgattctagatattttaataTggaaaccttagaattttttt	5	3	1	3	rs142715971	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98761871	A	A	98761871	1	1	39	0	1	0	0	0	0	0	0	0	2290	1479	51	5		5	C4orf37	4	98761871	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	10184251	98761871	92392405	83	47439											
TSPAN5	10098	broad.mit.edu	37	chr4	99420218	99420218	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggaaggtggccagggatGagcagggctgccaggtggtc	20	7	0	2	rs79102031	byFrequency;by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99420218	A	A	99420218	1	1	39	0	1	0	0	0	0	0	0	0	16775	1305	45	4		4	TSPAN5	4	99420218	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	658347	99420218	91734058	84	47440											
FAT4	79633	broad.mit.edu	37	chr4	126411871	126411871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcagcatcgccccttcgGatgcagacatcattcaacac	7	16	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126411871	T	T	126411871	3	4	39	1	0	0	0	0	1	0	0	0	5749	1174	41	3	13960	3	FAT4	4	126411871	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	26991653	126411871	64742405	85	47441											
INPP4B	8821	broad.mit.edu	37	chr4	143052838	143052838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccctacagccgagcgtgGtggctcatgcctgtaatccc	11	14	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143052838	T	T	143052838	1	4	39	0	1	0	0	0	0	0	0	0	7823	1276	44	3		3	INPP4B	4	143052838	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	16640967	143052838	48101438	86	47442											
DCLK2	166614	broad.mit.edu	37	chr4	151114271	151114271	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctaatttatttcttggAcatgatttttgttctcaggt	8	5	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151114271	G	G	151114271	1	3	39	0	1	0	0	0	0	0	0	0	4325	290	10	5		5	DCLK2	4	151114271	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	8061433	151114271	40040005	87	47443											
DCHS2	54798	broad.mit.edu	37	chr4	155298359	155298359	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatgtatacacagtggcTcacttgtgattatgtttaaa	9	5	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155298359	A	A	155298359	1	1	39	0	1	0	0	0	0	0	0	0	4321	1566	54	5		5	DCHS2	4	155298359	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	4184088	155298359	35855917	88	47444											
IRX2	153572	broad.mit.edu	37	chr5	2748735	2748735	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcctggcggtgccccggTtgaggccggcgcggcggccg	19	16	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2748735	G	G	2748735	3	3	39	1	0	0	0	0	1	0	0	0	7914	1725	60	5	336	5	IRX2	5	2748735	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08		2748735	178166525	89	47445											
CDH10	1008	broad.mit.edu	37	chr5	24509847	24509847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatctttaaatggtcctaGgtaataaaaacggggatcta	9	5	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24509847	T	T	24509847	3	4	39	1	0	0	0	0	1	0	0	0	3126	991	35	2	1306	2	CDH10	5	24509847	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	21761112	24509847	156405413	90	47446											
CDH6	1004	broad.mit.edu	37	chr5	31322772	31322772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccggtttgatcatggatGgaggcaagtgcatccttaaa	12	8	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31322772	T	T	31322772	1	4	39	0	1	0	0	0	0	0	0	0	3144	1363	47	2		2	CDH6	5	31322772	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	6812925	31322772	149592488	91	47447											
ADAMTS12	81792	broad.mit.edu	37	chr5	33840542	33840542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatgaagaacctggcaGcctgggttaactcacagctt	11	10	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33840542	T	T	33840542	1	4	39	0	1	0	0	0	0	0	0	0	257	986	34	3		3	ADAMTS12	5	33840542	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	2517770	33840542	147074718	92	47448											
NIPBL	25836	broad.mit.edu	37	chr5	36953976	36953976	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacacatttacagaaatagcAactgaaactgccctttaaag	5	9	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36953976	T	T	36953976	1	4	39	0	1	0	0	0	0	0	0	0	10523	145	5	5		5	NIPBL	5	36953976	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	3113434	36953976	143961284	93	47449											
ITGA2	3673	broad.mit.edu	37	chr5	52386429	52386429	+	Nonstop_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accacagagctcagtagctgAaccagcagacctacctgcag	9	14	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52386429	C	C	52386429	4	2	39	1	0	0	0	0	0	0	0	0	7945	259	9	5	3664	5	ITGA2	5	52386429	Nonstop_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	15432453	52386429	128528831	94	47450											
CDC20B	166979	broad.mit.edu	37	chr5	54424231	54424231	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagaacatgatgagaaaaAaaaaaactggccagtacttg	9	6	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54424231	G	G	54424231	1	3	39	0	1	0	0	0	0	0	0	0	3090	29	1	5		5	CDC20B	5	54424231	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	2037802	54424231	126491029	95	47451											
EDIL3	10085	broad.mit.edu	37	chr5	83512618	83512618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttagatttcctgtgcaGtccctattacaggatgagca	9	10	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83512618	T	T	83512618	1	4	39	0	1	0	0	0	0	0	0	0	4955	1044	36	3		3	EDIL3	5	83512618	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	29088387	83512618	97402642	96	47452											
LIX1	167410	broad.mit.edu	37	chr5	96440811	96440811	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaaaagattattgggtcgGgagatgttagtgataaatgt	12	3	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96440811	C	C	96440811	1	2	39	0	1	0	0	0	0	0	0	0	8905	1247	43	4		4	LIX1	5	96440811	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	12928193	96440811	84474449	97	47453											
EGR1	1958	broad.mit.edu	37	chr5	137802964	137802964	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaccagaagcccttccagGgcctggagagccgcacccag	12	16	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137802964	A	A	137802964	3	1	39	1	0	0	0	0	1	0	0	0	5011	1232	43	4	832	4	EGR1	5	137802964	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	41362153	137802964	43112296	98	47454											
PCDHB2	56133	broad.mit.edu	37	chr5	140474884	140474884	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggaaccaacagtctccaAaattacacaatcagtcccaa	5	12	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140474884	C	C	140474884	3	2	39	1	0	0	0	0	1	0	0	0	11636	11	1	5	512	5	PCDHB2	5	140474884	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	2671920	140474884	40440376	99	47455											
KIAA0141	9812	broad.mit.edu	37	chr5	141315295	141315296	+	Intron	INS	-	TG	TG													atccatgtgcagggcaagacINStgggcatgctggcctgcttt							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	141315296	TG	TG	141315295	6	5	39	0	1	1	1	0	0	0	0	0	8226	580	20	0		0	KIAA0141	5	141315295	Intron	INS	-	TCGA-17-Z005-01A-01W-0746-08	840411	141315295	39599965	100	47456											
GLRA1	2741	broad.mit.edu	37	chr5	151228706	151228706	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctttctttctttctttcTttctttcttttcttttcttt	0	9	9	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151228706	C	C	151228706	1	2	39	0	1	0	0	0	0	0	0	0	6518	1624	56	5		5	GLRA1	5	151228706	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	9913411	151228706	29686554	101	47457											
GRIA1	2890	broad.mit.edu	37	chr5	153190512	153190512	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttggatttacatttgaagTccagtcttgactcattccca	7	9	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153190512	A	A	153190512	1	1	39	0	1	0	0	0	0	0	0	0	6833	1682	58	5		5	GRIA1	5	153190512	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	1961806	153190512	27724748	102	47458											
C5orf40	408263	broad.mit.edu	37	chr5	156769987	156769987	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagctccatctctggagttCttgcgtggcatttccaccag	9	13	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156769987	T	T	156769987	2	4	39	1	0	0	0	0	0	0	0	1	2322	912	32	4		4	C5orf40	5	156769987	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	3579475	156769987	24145273	103	47459											
CDHR2	54825	broad.mit.edu	37	chr5	176017474	176017474	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcagctgctgcagctgggGctggtggtgctggtgagtgc	19	9	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176017474	A	A	176017474	2	1	39	1	0	0	0	0	0	0	0	1	3149	1190	42	4		4	CDHR2	5	176017474	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	19247487	176017474	4897786	104	47460											
C6orf145	221749	broad.mit.edu	37	chr6	3738270	3738270	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccacctccctgcccagcCcggggcctggccacactcac	8	23	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3738270	T	T	3738270	1	4	39	0	1	0	0	0	0	0	0	0	2357	638	22	4		4	C6orf145	6	3738270	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08		3738270	167376797	105	47461											
TRIM39	56658	broad.mit.edu	37	chr6	30297566	30297566	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtggggaagcagacacacGatgtcagtgtgggtaaaaag	16	5	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30297566	A	A	30297566	1	1	39	0	1	0	0	0	0	0	0	0	16637	1073	37	4		4	TRIM39	6	30297566	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	26559296	30297566	140817501	106	47462											
CLPS	1208	broad.mit.edu	37	chr6	35763532	35763532	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagagcactcgctgttctcGctggccatggatgtgcagcg	13	12	1	1	rs144552522		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35763532	A	A	35763532	2	1	39	1	0	0	0	0	0	0	0	1	3585	1078	38	4		4	CLPS	6	35763532	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	5465966	35763532	135351535	107	47463											
KLHDC3	116138	broad.mit.edu	37	chr6	42985506	42985506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaaaggtttgggttggGggtcttggggagtagagtac	18	4	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42985506	T	T	42985506	1	4	39	0	1	0	0	0	0	0	0	0	8428	1247	43	2		2	KLHDC3	6	42985506	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	7221974	42985506	128129561	108	47464											
TTBK1	84630	broad.mit.edu	37	chr6	43211858	43211858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcccagagatccctccCatggtcctatctcttccttg	7	16	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43211858	A	A	43211858	1	1	39	0	1	0	0	0	0	0	0	0	16802	609	21	2		2	TTBK1	6	43211858	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	226352	43211858	127903209	109	47465											
AARS2	57505	broad.mit.edu	37	chr6	44269076	44269076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctggtcaggactttgcCctccccagaccctggggcag	11	16	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44269076	T	T	44269076	1	4	39	0	1	0	0	0	0	0	0	0	20	638	22	4		4	AARS2	6	44269076	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1057218	44269076	126845991	110	47466											
TINAG	27283	broad.mit.edu	37	chr6	54254605	54254605	+	Frame_Shift_Del	DEL	G	-	-													gcagattgctgccaattcctGgggaaagtcatggggagaga							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54254605	-	-	54254605	7	5	39	1	0	1	0	1	0	0	0	0	16044	1357	47	0	1355	0	TINAG	6	54254605	Frame_Shift_Del	DEL	G	TCGA-17-Z005-01A-01W-0746-08	9985529	54254605	116860462	111	47467											
PRIM2	5558	broad.mit.edu	37	chr6	57350150	57350150	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgagctgctgcaacctgGaatccttttgatactgctgt	10	10	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57350150	T	T	57350150	1	4	39	0	1	0	0	0	0	0	0	0	12597	1189	41	3		3	PRIM2	6	57350150	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	3095545	57350150	113764917	112	47468											
ASCC3	10973	broad.mit.edu	37	chr6	100978672	100978672	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atccaagacaaaaaggattaGatctagaaatggccattgcc	8	8	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100978672	C	C	100978672	1	2	39	0	1	0	0	0	0	0	0	0	1037	957	33	4		4	ASCC3	6	100978672	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	43628522	100978672	70136395	113	47469											
SOBP	55084	broad.mit.edu	37	chr6	107955722	107955722	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaacgggttctccagcaaCggggagaacttcattccgaa	10	13	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107955722	T	T	107955722	2	4	39	1	0	0	0	0	0	0	0	1	15026	535	19	4		4	SOBP	6	107955722	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	6977050	107955722	63159345	114	47470											
GOPC	57120	broad.mit.edu	37	chr6	117884489	117884489	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtcatctagcggagtttcActtgcagtgcccaggtctcc	10	14	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117884489	G	G	117884489	2	3	39	1	0	0	0	0	0	0	0	1	6637	156	6	5		5	GOPC	6	117884489	Silent	SNP	A	TCGA-17-Z005-01A-01W-0746-08	9928767	117884489	53230578	115	47471											
ECHDC1	55862	broad.mit.edu	37	chr6	127636045	127636045	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttattaaaggaagtctgTatattgaagaaaaaactgat	7	4	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127636045	C	C	127636045	1	2	39	0	1	0	0	0	0	0	0	0	4933	1653	57	5		5	ECHDC1	6	127636045	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	9751556	127636045	43479022	116	47472											
SYNE1	23345	broad.mit.edu	37	chr6	152792777	152792777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgactctctcctcccgtaCttaatgatccaagacttcag	5	14	2	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152792777	A	A	152792777	3	1	39	1	0	0	0	0	1	0	0	0	15564	564	20	3	25403	3	SYNE1	6	152792777	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	25156732	152792777	18322290	117	47473											
SFT2D1	113402	broad.mit.edu	37	chr6	166748212	166748212	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgctcgtggactgtgtagtCatgagatccaagcaccaagc	11	11	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166748212	A	A	166748212	1	1	39	0	1	0	0	0	0	0	0	0	14298	841	29	3		3	SFT2D1	6	166748212	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	13955435	166748212	4366855	118	47474											
HOXA2	3199	broad.mit.edu	37	chr7	27140509	27140509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaacgctaaagtcctGcaaagaggggacctcaaggg	14	8	1	2	rs138940688	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27140509	T	T	27140509	3	4	39	1	0	0	0	0	1	0	0	0	7359	1328	46	3	167	3	HOXA2	7	27140509	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08		27140509	131998154	119	47475											
FAM188B	84182	broad.mit.edu	37	chr7	30872128	30872128	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctttcttccttcccaccCttttttttgagatggagtct	5	13	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30872128	T	T	30872128	1	4	39	0	1	0	0	0	0	0	0	0	5561	696	24	4		4	FAM188B	7	30872128	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	3731619	30872128	128266535	120	47476											
FAM188B	84182	broad.mit.edu	37	chr7	30922703	30922703	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaggaaggcagataggTtcctggaccaccctgattca	11	12	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30922703	A	A	30922703	1	1	39	0	1	0	0	0	0	0	0	0	5561	1740	60	5		5	FAM188B	7	30922703	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	50575	30922703	128215960	121	47477											
ELMO1	9844	broad.mit.edu	37	chr7	37302520	37302520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtttaaggttcccttcCacccacagtgtgacagagtg	9	11	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37302520	A	A	37302520	1	1	39	0	1	0	0	0	0	0	0	0	5107	609	21	2		2	ELMO1	7	37302520	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	6379817	37302520	121836143	122	47478											
DTX2	113878	broad.mit.edu	37	chr7	76112337	76112337	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcccggtctgcgcccaggCtgaacaccaccaacgcctgg	13	17	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76112337	T	T	76112337	2	4	39	1	0	0	0	0	0	0	0	1	4834	796	28	4		4	DTX2	7	76112337	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	38809817	76112337	83026326	123	47479											
MAGI2	9863	broad.mit.edu	37	chr7	77708073	77708073	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagagttcacacacatttaTttcctgggcataaacatacg	6	9	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77708073	A	A	77708073	1	1	39	0	1	0	0	0	0	0	0	0	9283	1508	52	5		5	MAGI2	7	77708073	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	1595736	77708073	81430590	124	47480											
ABCB4	5244	broad.mit.edu	37	chr7	87081014	87081014	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtgagcttccatcctctGatgaatcccactatgaatcc	8	12	1	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87081014	T	T	87081014	2	4	39	1	0	0	0	0	0	0	0	1	43	1280	45	3		3	ABCB4	7	87081014	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	9372941	87081014	72057649	125	47481											
SPDYE6	729597	broad.mit.edu	37	chr7	101992334	101992334	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgggcaacagagcaagactCtgtctcacacacacacacac	7	15	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101992334	T	T	101992334	1	4	39	0	1	0	0	0	0	0	0	0	15151	928	32	4		4	SPDYE6	7	101992334	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	14911320	101992334	57146329	126	47482											
LHFPL3	375612	broad.mit.edu	37	chr7	104309519	104309519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggagagagagtgagaaGtctctagaaaatgaaacact	12	4	1	6			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104309519	T	T	104309519	1	4	39	0	1	0	0	0	0	0	0	0	8838	1044	36	3		3	LHFPL3	7	104309519	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	2317185	104309519	54829144	127	47483											
WNT2	7472	broad.mit.edu	37	chr7	116955438	116955438	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttaaaagtggtccggTagcactatttctgaataact	7	7	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116955438	C	C	116955438	1	2	39	0	1	0	0	0	0	0	0	0	17513	1653	57	5		5	WNT2	7	116955438	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	12645919	116955438	42183225	128	47484											
HYAL4	23553	broad.mit.edu	37	chr7	123517127	123517127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaagacggctgatggctGctctggggtttccccttctc	11	11	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123517127	T	T	123517127	3	4	39	1	0	0	0	0	1	0	0	0	7536	1319	46	3	1374	3	HYAL4	7	123517127	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	6561689	123517127	35621536	129	47485											
PODXL	5420	broad.mit.edu	37	chr7	131191248	131191248	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagggaactgaaggggcacCactgtgacccaccctccaat	10	13	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131191248	T	T	131191248	1	4	39	0	1	0	0	0	0	0	0	0	12275	609	21	4		4	PODXL	7	131191248	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	7674121	131191248	27947415	130	47486											
AKR1B15	441282	broad.mit.edu	37	chr7	134260325	134260326	+	Intron	DNP	CC	AA	AA													ttcagtttaagggtaagggtCctgccctattacttcttaaa							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	134260326	AA	AA	134260325	1	1	39	0	1	0	0	0	0	0	0	0	468	870	30	3		3	AKR1B15	7	134260325	Intron	DNP	CC	TCGA-17-Z005-01A-01W-0746-08	3069077	134260325	24878338	131	47487											
CHRM2	1129	broad.mit.edu	37	chr7	136700551	136700551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtttccacttccctgggCcattccaaagatgagaactc	7	13	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136700551	A	A	136700551	2	1	39	1	0	0	0	0	0	0	0	1	3408	726	26	3		3	CHRM2	7	136700551	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2440226	136700551	22438112	132	47488											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138739821	138739821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaggattacagggctgagCcactgcacccagccgatcta	11	13	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138739821	A	A	138739821	1	1	39	0	1	0	0	0	0	0	0	0	17701	754	26	3		3	ZC3HAV1	7	138739821	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2039270	138739821	20398842	133	47489											
TMEM176B	28959	broad.mit.edu	37	chr7	150493670	150493670	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtcatcctgcctgccagGgagaagacatatagcagtga	12	10	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150493670	A	A	150493670	1	1	39	0	1	0	0	0	0	0	0	0	16216	1247	43	4		4	TMEM176B	7	150493670	5'UTR	SNP	G	TCGA-17-Z005-01A-01W-0746-08	11753849	150493670	8644993	134	47490											
RBM33	155435	broad.mit.edu	37	chr7	155477623	155477623	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttctctttaatggctgTtaggatgaagaatacttgca	9	5	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155477623	G	G	155477623	1	3	39	0	1	0	0	0	0	0	0	0	13238	1740	60	5		5	RBM33	7	155477623	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	4983953	155477623	3661040	135	47491											
PTPRN2	5799	broad.mit.edu	37	chr7	158007205	158007205	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatattagatattaacagctCtaccccagcaaaacaccaca	3	12	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158007205	A	A	158007205	1	1	39	0	1	0	0	0	0	0	0	0	12916	928	32	3		3	PTPRN2	7	158007205	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2529582	158007205	1131458	136	47492											
SGCZ	137868	broad.mit.edu	37	chr8	14166656	14166656	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccctacagaacagatgggCactctggttttttaaaaacg	8	10	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14166656	T	T	14166656	1	4	39	0	1	0	0	0	0	0	0	0	14317	725	25	4		4	SGCZ	8	14166656	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08		14166656	132197366	137	47493											
BMP1	649	broad.mit.edu	37	chr8	22058798	22058798	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggcttcggtgcccaccaAccccccacctccactctgcc	9	21	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22058798	C	C	22058798	1	2	39	0	1	0	0	0	0	0	0	0	1462	58	2	5		5	BMP1	8	22058798	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	7892142	22058798	124305224	138	47494											
HGSNAT	138050	broad.mit.edu	37	chr8	43033258	43033258	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccatttttctatcgatgaCttctatactgcaacgggggt	8	9	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43033258	T	T	43033258	3	4	39	1	0	0	0	0	1	0	0	0	7155	565	20	4	931	4	HGSNAT	8	43033258	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	20974460	43033258	103330764	139	47495											
LYPLA1	10434	broad.mit.edu	37	chr8	54967647	54967647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccctcccaaaataattctGttagaaggaatgccattctt	5	10	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54967647	T	T	54967647	3	4	39	1	0	0	0	0	1	0	0	0	9204	1368	48	3	375	3	LYPLA1	8	54967647	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	11934389	54967647	91396375	140	47496											
CHD7	55636	broad.mit.edu	37	chr8	61768603	61768603	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcaaatggccagtaaatAggcgccagatgtttgatttc	11	7	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61768603	G	G	61768603	3	3	39	1	0	0	0	0	1	0	0	0	3361	411	15	5	7132	5	CHD7	8	61768603	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	6800956	61768603	84595419	141	47497											
SULF1	23213	broad.mit.edu	37	chr8	70488255	70488255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattatggaacatggggggGccaccttcatcaatgccttt	11	9	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70488255	T	T	70488255	3	4	39	1	0	0	0	0	1	0	0	0	15488	1203	42	3	229	3	SULF1	8	70488255	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	8719652	70488255	75875767	142	47498											
ZFHX4	79776	broad.mit.edu	37	chr8	77767551	77767551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtatgatcaaaataaaacCgattttgatgagacttcatc	8	6	2	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767551	A	A	77767551	2	1	39	1	0	0	0	0	0	0	0	1	17761	639	23	1		1	ZFHX4	8	77767551	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	7279296	77767551	68596471	143	47499											
MMP16	4325	broad.mit.edu	37	chr8	89179890	89179890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacactgtaaaacaaacatGtacttaccatcatgattagg	5	8	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89179890	T	T	89179890	1	4	39	0	1	0	0	0	0	0	0	0	9748	1392	48	3		3	MMP16	8	89179890	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	11412339	89179890	57184132	144	47500											
DPYS	1807	broad.mit.edu	37	chr8	105393333	105393333	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaagcctctgaccttgatCtcttcaacccttatgaggag	9	11	3	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105393333	A	A	105393333	1	1	39	0	1	0	0	0	0	0	0	0	4786	928	32	3		3	DPYS	8	105393333	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	16213443	105393333	40970689	145	47501											
EIF3E	3646	broad.mit.edu	37	chr8	109245906	109245907	+	Intron	INS	-	A	A													atagcaagactccatcttggINSaaaaaaaaaaattaaaaatt							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109245907	A	A	109245906	6	5	39	0	1	1	1	0	0	0	0	0	5057	1189	41	0		0	EIF3E	8	109245906	Intron	INS	-	TCGA-17-Z005-01A-01W-0746-08	3852573	109245906	37118116	146	47502											
FER1L6	654463	broad.mit.edu	37	chr8	125010116	125010116	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctaattattcaatctctTtgttaaatttgtctggtagt	5	5	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125010116	C	C	125010116	1	2	39	0	1	0	0	0	0	0	0	0	5872	1856	64	5		5	FER1L6	8	125010116	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	15764210	125010116	21353906	147	47503											
TATDN1	83940	broad.mit.edu	37	chr8	125551265	125551265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggaaaacgctcctcttaCcgataaacttgaagcgactc	8	12	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125551265	A	A	125551265	1	1	39	0	1	0	0	0	0	0	0	0	15710	521	18	3		3	TATDN1	8	125551265	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	541149	125551265	20812757	148	47504											
LRRC6	23639	broad.mit.edu	37	chr8	133686435	133686435	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggagaaggaggaGgaggagaaggaggaggagaa	24	0	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133686435	A	A	133686435	1	1	39	0	1	0	0	0	0	0	0	0	9103	1015	35	4		4	LRRC6	8	133686435	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	8135170	133686435	12677587	149	47505											
TG	7038	broad.mit.edu	37	chr8	133941453	133941453	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacaggtgaggagtggtgggGagatatgcactcagaagaag	18	4	1	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133941453	T	T	133941453	1	4	39	0	1	0	0	0	0	0	0	0	15936	1189	41	3		3	TG	8	133941453	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	255018	133941453	12422569	150	47506											
FAM135B	51059	broad.mit.edu	37	chr8	139145143	139145143	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattctgttcctgggcagacCtgttatacagcagtttccaa	8	10	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139145143	G	G	139145143	1	3	39	0	1	0	0	0	0	0	0	0	5495	696	24	4		4	FAM135B	8	139145143	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	5203690	139145143	7218879	151	47507											
COL22A1	169044	broad.mit.edu	37	chr8	139715564	139715564	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttacagttccaggtaacccGggagggcctgcaggaccagc	13	13	0	0	rs147410805		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139715564	C	C	139715564	2	2	39	1	0	0	0	0	0	0	0	1	3713	1103	39	4		4	COL22A1	8	139715564	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	570421	139715564	6648458	152	47508											
COL22A1	169044	broad.mit.edu	37	chr8	139866386	139866386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgtgtgccaggacagaGggaatatgccatcgtgactg	14	8	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139866386	T	T	139866386	1	4	39	0	1	0	0	0	0	0	0	0	3713	1015	35	2		2	COL22A1	8	139866386	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	150822	139866386	6497636	153	47509											
TSNARE1	203062	broad.mit.edu	37	chr8	143407588	143407588	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggagggccctggagaGcatgagacggatgaggaacc	19	7	0	3	rs113968815		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143407588	C	C	143407588	1	2	39	0	1	0	0	0	0	0	0	0	16755	986	34	4		4	TSNARE1	8	143407588	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	3541202	143407588	2956434	154	47510											
TSNARE1	203062	broad.mit.edu	37	chr8	143413088	143413088	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgcctggatggagggGcaggcccaggccagacgcac	18	12	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143413088	A	A	143413088	1	1	39	0	1	0	0	0	0	0	0	0	16755	1218	42	4		4	TSNARE1	8	143413088	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	5500	143413088	2950934	155	47511											
TPD52L3	89882	broad.mit.edu	37	chr9	6328730	6328730	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggaggctgaaattgtaacCctacgccacgtactagcagc	10	11	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6328730	G	G	6328730	2	3	39	1	0	0	0	0	0	0	0	1	16524	610	22	4		4	TPD52L3	9	6328730	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08		6328730	134884701	156	47512											
NFIB	4781	broad.mit.edu	37	chr9	14088343	14088343	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactgttgagaggagagagGcagcagggagggaagaaaaa	19	3	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14088343	A	A	14088343	1	1	39	0	1	0	0	0	0	0	0	0	10466	1218	42	4		4	NFIB	9	14088343	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	7759613	14088343	127125088	157	47513											
VCP	7415	broad.mit.edu	37	chr9	35068469	35068469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgaagctgtccctagacCagaaagctcagatgaaggaa	11	8	1	6			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35068469	A	A	35068469	1	1	39	0	1	0	0	0	0	0	0	0	17267	609	21	2		2	VCP	9	35068469	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	20980126	35068469	106144962	158	47514											
RECK	8434	broad.mit.edu	37	chr9	36087705	36087705	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtaggtttatattgctgtGacagagctgaagaccatgct	11	6	0	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36087705	A	A	36087705	3	1	39	1	0	0	0	0	1	0	0	0	13308	1290	45	4	686	4	RECK	9	36087705	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1019236	36087705	105125726	159	47515											
PRUNE2	158471	broad.mit.edu	37	chr9	79320649	79320649	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatgagaggcgggctgagAggagccctttatgtctgctt	14	7	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79320649	C	C	79320649	3	2	39	1	0	0	0	0	1	0	0	0	12747	304	11	5	2773	5	PRUNE2	9	79320649	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	43232944	79320649	61892782	160	47516											
SYK	6850	broad.mit.edu	37	chr9	93606170	93606170	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaggtgtgtgccctccgGcccctgaagcatggccagca	14	15	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93606170	T	T	93606170	1	4	39	0	1	0	0	0	0	0	0	0	15557	1218	42	3		3	SYK	9	93606170	5'UTR	SNP	G	TCGA-17-Z005-01A-01W-0746-08	14285521	93606170	47607261	161	47517											
ZNF462	58499	broad.mit.edu	37	chr9	109720492	109720493	+	Intron	DEL	GA	-	-													ccaagcctcctttcccatctGagaggtcaggactgtgggta					rs148272421		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109720493	-	-	109720492	6	5	39	0	1	1	0	1	0	0	0	0	18053	1305	45	0		0	ZNF462	9	109720492	Intron	DEL	GA	TCGA-17-Z005-01A-01W-0746-08	16114322	109720492	31492939	162	47518											
C9orf5	23731	broad.mit.edu	37	chr9	111849401	111849401	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaatggaaaagttcaaacCacgaaatatattaactccat	5	7	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111849401	T	T	111849401	1	4	39	0	1	0	0	0	0	0	0	0	2512	609	21	4		4	C9orf5	9	111849401	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2128909	111849401	29364030	163	47519											
SVEP1	79987	broad.mit.edu	37	chr9	113149457	113149457	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataggcattaattgctttcTctgggcccatatcccttatg	8	10	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113149457	C	C	113149457	1	2	39	0	1	0	0	0	0	0	0	0	15538	1566	54	5		5	SVEP1	9	113149457	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	1300056	113149457	28063974	164	47520											
DIP2C	22982	broad.mit.edu	37	chr10	468956	468956	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcactgagccttcatcttCtgagccagaagaggtatctg	10	11	4	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	468956	A	A	468956	4	1	39	1	0	0	0	0	0	1	0	0	4569	922	32	3	4390	3	DIP2C	10	468956	Nonsense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08		468956	135065791	165	47521											
ITIH5	80760	broad.mit.edu	37	chr10	7611732	7611732	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggaaatccacaacaaagTggggatcaccatccactgcc	11	12	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7611732	A	A	7611732	3	1	39	1	0	0	0	0	1	0	0	0	7977	1696	59	5	834	5	ITIH5	10	7611732	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	7142776	7611732	127923015	166	47522											
ST8SIA6	338596	broad.mit.edu	37	chr10	17454427	17454428	+	Intron	DNP	GG	TT	TT													taccaaattttggacagagaGgggctcctgaaaccatacta							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	17454428	TT	TT	17454427	1	4	39	0	1	0	0	0	0	0	0	0	15354	1015	35	2		2	ST8SIA6	10	17454427	Intron	DNP	GG	TCGA-17-Z005-01A-01W-0746-08	9842695	17454427	118080320	167	47523											
PIP4K2A	5305	broad.mit.edu	37	chr10	22880659	22880659	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtgtgaaaacgagctcCactgcgggcctgggagtcgt	16	9	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22880659	A	A	22880659	4	1	39	1	0	0	0	0	0	1	0	0	12031	603	21	2	857	2	PIP4K2A	10	22880659	Nonsense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	5426232	22880659	112654088	168	47524											
ARMC3	219681	broad.mit.edu	37	chr10	23257339	23257339	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagggggtcttaaaaagctCctgtcatttgcagaaaactc	9	9	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23257339	A	A	23257339	2	1	39	1	0	0	0	0	0	0	0	1	956	842	30	3		3	ARMC3	10	23257339	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	376680	23257339	112277408	169	47525											
ANKRD26	22852	broad.mit.edu	37	chr10	27322179	27322179	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgatttgacctaatttcTtctttaaatcctgtgtctca	4	9	4	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27322179	A	A	27322179	3	1	39	1	0	0	0	0	1	0	0	0	654	1609	56	5	1390	5	ANKRD26	10	27322179	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	4064840	27322179	108212568	170	47526											
ITGB1	3688	broad.mit.edu	37	chr10	33190513	33190513	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtactcattttccctcataCttcggattgaccacagttgt	6	11	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33190513	G	G	33190513	3	3	39	1	0	0	0	0	1	0	0	0	7960	564	20	4	18	4	ITGB1	10	33190513	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	5868334	33190513	102344234	171	47527											
ANXA8	653145	broad.mit.edu	37	chr10	47077907	47077907	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccaagtgggcagaaatgtGacaggcctccctgtccctgc	12	13	0	2	rs112612332		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47077907	T	T	47077907	1	4	39	0	1	0	0	0	0	0	0	0	724	1305	45	3		3	ANXA8	10	47077907	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	13887394	47077907	88456840	172	47528											
PPYR1	5540	broad.mit.edu	37	chr10	47083780	47083780	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgggcgctatgggcattagGatatagtagcttttgctgag	14	6	0	1	rs113420724	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47083780	A	A	47083780	1	1	39	0	1	0	0	0	0	0	0	0	12517	1189	41	4		4	PPYR1	10	47083780	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	5873	47083780	88450967	173	47529											
ANXA8	653145	broad.mit.edu	37	chr10	47107976	47107976	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagccaggcagcctggggaCcctgggccacagcttccttc	14	15	0	0	rs143975273	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47107976	T	T	47107976	1	4	39	0	1	0	0	0	0	0	0	0	724	522	18	4		4	ANXA8	10	47107976	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	24196	47107976	88426771	174	47530											
BICC1	80114	broad.mit.edu	37	chr10	60559038	60559038	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccttctgccagaatgtgtGtgtgatctgtactgtttgta	12	7	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60559038	A	A	60559038	1	1	39	0	1	0	0	0	0	0	0	0	1433	1392	48	4		4	BICC1	10	60559038	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	13451062	60559038	74975709	175	47531											
ADAMTS14	140766	broad.mit.edu	37	chr10	72434397	72434397	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgcttcctctcccacgtGgtgtctggcccagcagcagc	12	16	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72434397	T	T	72434397	2	4	39	1	0	0	0	0	0	0	0	1	259	1335	47	2		2	ADAMTS14	10	72434397	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	11875359	72434397	63100350	176	47532											
SH2D4B	387694	broad.mit.edu	37	chr10	82398735	82398735	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcccagagattctggtaCgttgtgtctttgttctcatt	10	8	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82398735	T	T	82398735	1	4	39	0	1	0	0	0	0	0	0	0	14349	551	19	4		4	SH2D4B	10	82398735	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	9964338	82398735	53136012	177	47533											
NRG3	10718	broad.mit.edu	37	chr10	84718766	84718766	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaatggtaaaagctacagtCtcaaagcatccagcacaatg	7	9	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84718766	T	T	84718766	3	4	39	1	0	0	0	0	1	0	0	0	10744	913	32	4	1409	4	NRG3	10	84718766	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2320031	84718766	50815981	178	47534											
NRG3	10718	broad.mit.edu	37	chr10	84738849	84738849	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actcgaagaatcaaggatccCagaccaggatacgatacctt	8	11	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84738849	G	G	84738849	3	3	39	1	0	0	0	0	1	0	0	0	10744	594	21	4	1754	4	NRG3	10	84738849	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	20083	84738849	50795898	179	47535											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236232	118236232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaacgttggaaacattaCaagtgttcagttcatctgga	9	6	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118236232	A	A	118236232	3	1	39	1	0	0	0	0	1	0	0	0	12247	478	17	3	1283	3	PNLIPRP3	10	118236232	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	33497383	118236232	17298515	180	47536											
CPXM2	119587	broad.mit.edu	37	chr10	125514203	125514203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggatgtcatggttaatgcCttctacggagataatggcgt	12	7	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125514203	T	T	125514203	3	4	39	1	0	0	0	0	1	0	0	0	3870	681	24	4	285	4	CPXM2	10	125514203	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	7277971	125514203	10020544	181	47537											
CYP2E1	1571	broad.mit.edu	37	chr10	135346288	135346288	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtaaaagagtatgtgtcTgaaagggtgaaggagcacca	14	4	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135346288	C	C	135346288	2	2	39	1	0	0	0	0	0	0	0	1	4203	1567	55	5		5	CYP2E1	10	135346288	Silent	SNP	T	TCGA-17-Z005-01A-01W-0746-08	9832085	135346288	188459	182	47538											
STIM1	6786	broad.mit.edu	37	chr11	3990997	3990997	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacaaaaagttggaaaggaAagtggggcccaggctgagat	15	5	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3990997	T	T	3990997	1	4	39	0	1	0	0	0	0	0	0	0	15401	29	1	5		5	STIM1	11	3990997	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08		3990997	131015519	183	47539											
OR51G1	79324	broad.mit.edu	37	chr11	4944831	4944831	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagcagtacagcacagaTatgagagacacaggtgttga	13	6	0	5			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4944831	C	C	4944831	3	2	39	1	0	0	0	0	1	0	0	0	11192	1406	49	5	228	5	OR51G1	11	4944831	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	953834	4944831	130061685	184	47540											
HBG2	3048	broad.mit.edu	37	chr11	5284068	5284068	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcctcaaggatctagaacCagaaatactgtttgacccag	7	10	2	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5284068	G	G	5284068	1	3	39	0	1	0	0	0	0	0	0	0	7049	609	21	4		4	HBG2	11	5284068	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	339237	5284068	129722448	185	47541											
TRIM5	85363	broad.mit.edu	37	chr11	5952456	5952456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtccagtccctctcctaGggagagatctcctgaccaag	9	14	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5952456	T	T	5952456	1	4	39	0	1	0	0	0	0	0	0	0	16650	1015	35	2		2	TRIM5	11	5952456	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	668388	5952456	129054060	186	47542											
MRVI1	10335	broad.mit.edu	37	chr11	10648125	10648125	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtcagctagccctttgggGacgttctgaaaaagacaagg	12	9	2	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10648125	T	T	10648125	2	4	39	1	0	0	0	0	0	0	0	1	9947	1161	41	3		3	MRVI1	11	10648125	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	4695669	10648125	124358391	187	47543											
PIK3C2A	5286	broad.mit.edu	37	chr11	17169144	17169144	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcccattttcgacagttttGaatatgctcatgacttccaa	6	10	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17169144	C	C	17169144	3	2	39	1	0	0	0	0	1	0	0	0	12004	1299	45	4	3692	4	PIK3C2A	11	17169144	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	6521019	17169144	117837372	188	47544											
WT1	7490	broad.mit.edu	37	chr11	32439237	32439237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagttagaaacacataacCacaaaataatacacaactgt	4	8	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32439237	A	A	32439237	1	1	39	0	1	0	0	0	0	0	0	0	17535	609	21	2		2	WT1	11	32439237	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	15270093	32439237	102567279	189	47545											
C11orf41	25758	broad.mit.edu	37	chr11	33677660	33677660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcttctctcaggcggtaaCacgttcctttctttgttttg	8	11	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33677660	A	A	33677660	1	1	39	0	1	0	0	0	0	0	0	0	1652	493	17	3		3	C11orf41	11	33677660	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1238423	33677660	101328856	190	47546											
LRRC4C	57689	broad.mit.edu	37	chr11	40491656	40491656	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagatacctcccagcaggGgtcgacagacacctcatata	10	12	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40491656	A	A	40491656	1	1	39	0	1	0	0	0	0	0	0	0	9095	1247	43	4		4	LRRC4C	11	40491656	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	6813996	40491656	94514860	191	47547											
SYT13	57586	broad.mit.edu	37	chr11	45265822	45265822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatcatctcgttccacacGgggttgatcttgtgcttagc	10	10	3	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45265822	T	T	45265822	2	4	39	1	0	0	0	0	0	0	0	1	15588	1103	39	1		1	SYT13	11	45265822	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	4774166	45265822	89740694	192	47548											
MS4A14	84689	broad.mit.edu	37	chr11	60167739	60167739	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacctacgcctaccttcccTactccctgatgctcaggtgg	7	17	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60167739	C	C	60167739	1	2	39	0	1	0	0	0	0	0	0	0	9952	1537	53	5		5	MS4A14	11	60167739	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	14901917	60167739	74838777	193	47549											
TMEM109	79073	broad.mit.edu	37	chr11	60689192	60689192	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttttagctcttgccccgctCtcccctcaccacttctccag	4	20	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60689192	T	T	60689192	1	4	39	0	1	0	0	0	0	0	0	0	16148	928	32	4		4	TMEM109	11	60689192	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	521453	60689192	74317324	194	47550											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62490020	62490020	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaagcacaagtgaattccCagtgccctctatccgctcct	9	14	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62490020	T	T	62490020	1	4	39	0	1	0	0	0	0	0	0	0	7342	609	21	4		4	HNRNPUL2	11	62490020	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1800828	62490020	72516496	195	47551											
LRP5	4041	broad.mit.edu	37	chr11	68115425	68115425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggaggatgcggccgcaGtggacttccagttttccaag	14	11	0	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68115425	T	T	68115425	3	4	39	1	0	0	0	0	1	0	0	0	9047	1029	36	3	208	3	LRP5	11	68115425	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	5625405	68115425	66891091	196	47552											
DGAT2	84649	broad.mit.edu	37	chr11	75501597	75501597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgatgggaagggggcatGgtgcatggggtgatggtcac	20	6	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75501597	T	T	75501597	1	4	39	0	1	0	0	0	0	0	0	0	4498	1363	47	2		2	DGAT2	11	75501597	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	7386172	75501597	59504919	197	47553											
CAPN5	726	broad.mit.edu	37	chr11	76834890	76834890	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggccgtgcacattctcAgcagcacctccctcatggct	9	16	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76834890	G	G	76834890	3	3	39	1	0	0	0	0	1	0	0	0	2655	188	7	5	1943	5	CAPN5	11	76834890	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	1333293	76834890	58171626	198	47554											
PRCP	5547	broad.mit.edu	37	chr11	82549282	82549282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctatctcttctcagcatccTatctttcaaggcataggaaa	5	12	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82549282	C	C	82549282	1	2	39	0	1	0	0	0	0	0	0	0	12555	1537	53	5		5	PRCP	11	82549282	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	5714392	82549282	52457234	199	47555											
CNTN5	53942	broad.mit.edu	37	chr11	100207767	100207767	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgccactttgattgaTgaagtgttcaaaattggcaa	8	7	2	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100207767	A	A	100207767	1	1	39	0	1	0	0	0	0	0	0	0	3676	1479	51	5		5	CNTN5	11	100207767	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	17658485	100207767	34798749	200	47556											
DDI1	414301	broad.mit.edu	37	chr11	103908003	103908003	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgatccgcagcatgctgctCtccaacccccacgatctgtc	7	18	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103908003	A	A	103908003	2	1	39	1	0	0	0	0	0	0	0	1	4361	900	32	3		3	DDI1	11	103908003	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	3700236	103908003	31098513	201	47557											
GUCY1A2	2977	broad.mit.edu	37	chr11	106558145	106558145	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagtaggattattgcctgaCataatacagaaattttgctg	8	5	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106558145	T	T	106558145	1	4	39	0	1	0	0	0	0	0	0	0	6958	493	17	4		4	GUCY1A2	11	106558145	3'UTR	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2650142	106558145	28448371	202	47558											
C11orf53	341032	broad.mit.edu	37	chr11	111154946	111154946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcctccgcagggcagagCcatgcggctctcctggagcc	14	15	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111154946	A	A	111154946	3	1	39	1	0	0	0	0	1	0	0	0	1660	738	26	3	159	3	C11orf53	11	111154946	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	4596801	111154946	23851570	203	47559											
PPP2R1B	5519	broad.mit.edu	37	chr11	111636893	111636893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtacctcggccaccccCaccgcgacgcaggccttccc	8	21	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111636893	A	A	111636893	1	1	39	0	1	0	0	0	0	0	0	0	12484	609	21	2		2	PPP2R1B	11	111636893	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	481947	111636893	23369623	204	47560											
TTC12	54970	broad.mit.edu	37	chr11	113214916	113214916	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaccagttgagtttccCattaggatagagggtgacag	14	7	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113214916	T	T	113214916	1	4	39	0	1	0	0	0	0	0	0	0	16805	609	21	4		4	TTC12	11	113214916	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1578023	113214916	21791600	205	47561											
CEP164	22897	broad.mit.edu	37	chr11	117241905	117241905	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcccaggtgcagacagcaGtctgagcagtgctgttggca	14	11	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117241905	A	A	117241905	3	1	39	1	0	0	0	0	1	0	0	0	3279	1029	36	4	901	4	CEP164	11	117241905	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	4026989	117241905	17764611	206	47562											
CD3D	915	broad.mit.edu	37	chr11	118210558	118210558	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcaaggagcagagtggcaAtgacatcagtgacaatgatg	13	6	1	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118210558	G	G	118210558	3	3	39	1	0	0	0	0	1	0	0	0	3040	101	4	5	189	5	CD3D	11	118210558	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	968653	118210558	16795958	207	47563											
GRIK4	2900	broad.mit.edu	37	chr11	120673557	120673557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacagcgagtacgagactGcagaaaccagtacgtagact	12	9	0	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120673557	T	T	120673557	3	4	39	1	0	0	0	0	1	0	0	0	6842	1319	46	3	244	3	GRIK4	11	120673557	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	2462999	120673557	14332959	208	47564											
NCAPD3	23310	broad.mit.edu	37	chr11	134076378	134076378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgcttggttttcacccCcaaaaccaccatcaggccag	8	14	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134076378	A	A	134076378	1	1	39	0	1	0	0	0	0	0	0	0	10301	638	22	2		2	NCAPD3	11	134076378	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	13402821	134076378	930138	209	47565											
CLEC4A	50856	broad.mit.edu	37	chr12	8286687	8286687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgatctgctgcagtgtggGtttcgggcaccgcaggaaca	15	10	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8286687	T	T	8286687	1	4	39	0	1	0	0	0	0	0	0	0	3544	1276	44	3		3	CLEC4A	12	8286687	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08		8286687	125565208	210	47566											
CLEC6A	93978	broad.mit.edu	37	chr12	8613754	8613754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaaagggccataagttcCaccacactatttgtggttct	9	9	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8613754	A	A	8613754	1	1	39	0	1	0	0	0	0	0	0	0	3552	609	21	2		2	CLEC6A	12	8613754	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	327067	8613754	125238141	211	47567											
ERP27	121506	broad.mit.edu	37	chr12	15073937	15073937	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcaatttggtggcatcaaTgctttcaatgtcttcgtcct	8	10	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15073937	C	C	15073937	3	2	39	1	0	0	0	0	1	0	0	0	5283	1464	51	5	458	5	ERP27	12	15073937	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	6460183	15073937	118777958	212	47568											
SLCO1B1	10599	broad.mit.edu	37	chr12	21325613	21325613	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagctctgtcactcagcttTattgctaagacactaggtgc	9	11	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21325613	A	A	21325613	3	1	39	1	0	0	0	0	1	0	0	0	14837	1751	61	5	120	5	SLCO1B1	12	21325613	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	6251676	21325613	112526282	213	47569											
GXYLT1	283464	broad.mit.edu	37	chr12	42518995	42518995	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagcagccaggagcaacagTgtgaaaggagacaagaagag	14	7	0	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42518995	A	A	42518995	1	1	39	0	1	0	0	0	0	0	0	0	6968	1711	59	5		5	GXYLT1	12	42518995	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	21193382	42518995	91332900	214	47570											
PPHLN1	51535	broad.mit.edu	37	chr12	42825430	42825430	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaagcactgttgtaaatGtaatgtaaaagaactgtaaa	8	4	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42825430	T	T	42825430	1	4	39	0	1	0	0	0	0	0	0	0	12411	1392	48	3		3	PPHLN1	12	42825430	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	306435	42825430	91026465	215	47571											
TIMELESS	8914	broad.mit.edu	37	chr12	56818762	56818762	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgtataccctgagcacTattctcaaaaaagacagggt	8	8	1	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56818762	G	G	56818762	1	3	39	0	1	0	0	0	0	0	0	0	16027	1537	53	5		5	TIMELESS	12	56818762	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	13993332	56818762	77033133	216	47572											
RAP1B	5908	broad.mit.edu	37	chr12	69036511	69036511	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcttcggcatccaccTgcgcagtatatttatcctct	5	13	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69036511	A	A	69036511	1	1	39	0	1	0	0	0	0	0	0	0	13144	1595	55	5		5	RAP1B	12	69036511	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	12217749	69036511	64815384	217	47573											
TRHDE	29953	broad.mit.edu	37	chr12	73050689	73050689	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacctgcattgacattaagaCtctttttttcttttgaggta	7	7	2	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73050689	G	G	73050689	1	3	39	0	1	0	0	0	0	0	0	0	16603	580	20	4		4	TRHDE	12	73050689	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	4014178	73050689	60801206	218	47574											
MYF6	4618	broad.mit.edu	37	chr12	81102821	81102821	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcctttagattaggtcaCattacattaacatttaggaa	5	6	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81102821	A	A	81102821	1	1	39	0	1	0	0	0	0	0	0	0	10122	493	17	3		3	MYF6	12	81102821	3'UTR	SNP	C	TCGA-17-Z005-01A-01W-0746-08	8052132	81102821	52749074	219	47575											
ANKS1B	56899	broad.mit.edu	37	chr12	99451513	99451514	+	Intron	INS	-	GG	GG													aatgcgtgaagtgtcagtgtINSggtggttagagacgaggtct					rs140058029	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	99451514	GG	GG	99451513	6	5	39	0	1	1	1	0	0	0	0	0	689	1711	59	0		0	ANKS1B	12	99451513	Intron	INS	-	TCGA-17-Z005-01A-01W-0746-08	18348692	99451513	34400382	220	47576											
FAM71C	196472	broad.mit.edu	37	chr12	100042223	100042223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcatgctgctggcccgaCcagctgctgtctgtgacaat	11	12	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100042223	A	A	100042223	3	1	39	1	0	0	0	0	1	0	0	0	5660	507	18	3	273	3	FAM71C	12	100042223	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	590710	100042223	33809672	221	47577											
STAB2	55576	broad.mit.edu	37	chr12	104118499	104118499	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttccaatttggcaactctGggcttacctgtacagggctg	10	10	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104118499	A	A	104118499	1	1	39	0	1	0	0	0	0	0	0	0	15356	1363	47	4		4	STAB2	12	104118499	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	4076276	104118499	29733396	222	47578											
TMEM120B	144404	broad.mit.edu	37	chr12	122219128	122219128	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagcagcgggggtcagggGacgtcccctccctgtctgga	16	13	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122219128	T	T	122219128	1	4	39	0	1	0	0	0	0	0	0	0	16157	1189	41	3		3	TMEM120B	12	122219128	3'UTR	SNP	G	TCGA-17-Z005-01A-01W-0746-08	18100629	122219128	11632767	223	47579											
GOLGA3	2802	broad.mit.edu	37	chr12	133358913	133358913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggactaggtctgcctccCtcttggccaaagctgtttct	9	13	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133358913	A	A	133358913	3	1	39	1	0	0	0	0	1	0	0	0	6618	681	24	2	1094	2	GOLGA3	12	133358913	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	11139785	133358913	492982	224	47580											
SOHLH2	54937	broad.mit.edu	37	chr13	36743013	36743013	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctggtctttctatctgcaGaagctttgagtgcatttatc	9	8	3	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36743013	T	T	36743013	1	4	39	0	1	0	0	0	0	0	0	0	15038	957	33	3		3	SOHLH2	13	36743013	3'UTR	SNP	G	TCGA-17-Z005-01A-01W-0746-08		36743013	78426865	225	47581											
PCDH9	5101	broad.mit.edu	37	chr13	66878809	66878809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagttggtgctccttaggaCtctcagtagcacctcctgct	10	12	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66878809	T	T	66878809	3	4	39	1	0	0	0	0	1	0	0	0	11612	565	20	4	25	4	PCDH9	13	66878809	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	30135796	66878809	48291069	226	47582											
KLF12	11278	broad.mit.edu	37	chr13	74339033	74339033	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cataagccctattaaagtttCccgtaagacctacaaatact	4	11	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74339033	T	T	74339033	1	4	39	0	1	0	0	0	0	0	0	0	8411	870	30	4		4	KLF12	13	74339033	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	7460224	74339033	40830845	227	47583											
TPP2	7174	broad.mit.edu	37	chr13	103297089	103297089	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttactggagagtaacttcaTtggttagatttaaactttaa	8	4	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103297089	C	C	103297089	1	2	39	0	1	0	0	0	0	0	0	0	16536	1508	52	5		5	TPP2	13	103297089	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	28958056	103297089	11872789	228	47584											
SLC7A8	23428	broad.mit.edu	37	chr14	23608818	23608818	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacccgccttgccatggaGtccagggggtgtcttctgtc	13	13	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23608818	T	T	23608818	1	4	39	0	1	0	0	0	0	0	0	0	14818	1044	36	3		3	SLC7A8	14	23608818	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08		23608818	83740722	229	47585											
MYH6	4624	broad.mit.edu	37	chr14	23855120	23855120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaggtttccacaaggtgGctcctgaccccctcacctgg	10	15	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23855120	T	T	23855120	1	4	39	0	1	0	0	0	0	0	0	0	10132	1218	42	3		3	MYH6	14	23855120	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	246302	23855120	83494420	230	47586											
G2E3	55632	broad.mit.edu	37	chr14	31050225	31050225	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgactgcaagtaataaaaGttgttaatttgagactttta	7	3	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31050225	A	A	31050225	1	1	39	0	1	0	0	0	0	0	0	0	6200	1044	36	4		4	G2E3	14	31050225	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	7195105	31050225	76299315	231	47587											
AKAP6	9472	broad.mit.edu	37	chr14	32846378	32846378	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tataatttaaagtcggacttGgatttcctaactaaatcagt	6	6	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32846378	C	C	32846378	1	2	39	0	1	0	0	0	0	0	0	0	455	1363	47	4		4	AKAP6	14	32846378	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1796153	32846378	74503162	232	47588											
RGS6	9628	broad.mit.edu	37	chr14	72932467	72932467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcctttcttccctcagcCatctatctctgtaagaggac	5	13	4	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72932467	A	A	72932467	2	1	39	1	0	0	0	0	0	0	0	1	13418	608	21	2		2	RGS6	14	72932467	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	40086089	72932467	34417073	233	47589											
RPS6KL1	83694	broad.mit.edu	37	chr14	75386663	75386663	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcctcacgtcgctccttgTtggggtcaactgtgggagac	13	12	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75386663	A	A	75386663	3	1	39	1	0	0	0	0	1	0	0	0	13770	1725	60	5	1386	5	RPS6KL1	14	75386663	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	2454196	75386663	31962877	234	47590											
C14orf177	283598	broad.mit.edu	37	chr14	99183364	99183364	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttggcagagagggaggcgggGaggacggtgaatatccacaa	18	6	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99183364	A	A	99183364	1	1	39	0	1	0	0	0	0	0	0	0	1773	1189	41	4		4	C14orf177	14	99183364	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	23796701	99183364	8166176	235	47591											
WDR25	79446	broad.mit.edu	37	chr14	100993181	100993181	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaccaccagtgtcatcacCgccaccatcaccagtaccac	4	20	3	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100993181	T	T	100993181	1	4	39	0	1	0	0	0	0	0	0	0	17409	667	23	4		4	WDR25	14	100993181	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1809817	100993181	6356359	236	47592											
GABRB3	2562	broad.mit.edu	37	chr15	27184492	27184492	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggggcatcgccaatgaaAtgcccccgatttcaaagaac	9	12	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27184492	T	T	27184492	3	4	39	1	0	0	0	0	1	0	0	0	6228	116	4	5		5	GABRB3	15	27184492	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08		27184492	75346900	237	47593											
GABRA5	2558	broad.mit.edu	37	chr15	27185073	27185073	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttgcttatttgcaggCgaatacacaatcatgacagc	8	9	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27185073	G	G	27185073	2	3	39	1	0	0	0	0	0	0	0	1	6224	782	27	4		4	GABRA5	15	27185073	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	581	27185073	75346319	238	47594											
CHRNA7	1139	broad.mit.edu	37	chr15	32366412	32366412	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttattctgtttttgtttTgtttttgtggattcttcggg	9	5	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32366412	A	A	32366412	1	1	39	0	1	0	0	0	0	0	0	0	3419	1827	63	5		5	CHRNA7	15	32366412	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	5181339	32366412	70164980	239	47595											
C15orf52	388115	broad.mit.edu	37	chr15	40631027	40631027	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccgtggtcctcagcatcCtcatcctcaagcatctcgtt	6	18	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40631027	T	T	40631027	2	4	39	1	0	0	0	0	0	0	0	1	1813	680	24	4		4	C15orf52	15	40631027	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	8264615	40631027	61900365	240	47596											
MAPKBP1	23005	broad.mit.edu	37	chr15	42108004	42108004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgggcacacttaggtaatgCcaggccctgggtgggtactg	15	9	0	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42108004	G	G	42108004	1	3	39	0	1	0	0	0	0	0	0	0	9384	754	26	4		4	MAPKBP1	15	42108004	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1476977	42108004	60423388	241	47597											
C15orf43	145645	broad.mit.edu	37	chr15	45253691	45253691	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttaaaaaaaaaaaccaaaAcagtattggatttgtttttc	4	5	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45253691	G	G	45253691	1	3	39	0	1	0	0	0	0	0	0	0	1810	58	2	5		5	C15orf43	15	45253691	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	3145687	45253691	57277701	242	47598											
DUOX2	50506	broad.mit.edu	37	chr15	45390463	45390463	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatttttccttctgtgttaTcctgaactctcttactgtgg	6	10	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45390463	C	C	45390463	1	2	39	0	1	0	0	0	0	0	0	0	4841	1450	50	5		5	DUOX2	15	45390463	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	136772	45390463	57140929	243	47599											
SEMA6D	80031	broad.mit.edu	37	chr15	47736673	47736673	+	Intron	DEL	G	-	-													gataagatttcaaggatgaaGgctgctttgctccctcagtc					rs80007579		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47736673	-	-	47736673	6	5	39	0	1	1	0	1	0	0	0	0	14155	1015	35	0		0	SEMA6D	15	47736673	Intron	DEL	G	TCGA-17-Z005-01A-01W-0746-08	2346210	47736673	54794719	244	47600											
MYO5A	4644	broad.mit.edu	37	chr15	52689303	52689303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtttcccttctctttaCcagtaggaaacagaatcaaa	5	10	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52689303	A	A	52689303	1	1	39	0	1	0	0	0	0	0	0	0	10172	522	18	3		3	MYO5A	15	52689303	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	4952630	52689303	49842089	245	47601											
CCDC33	80125	broad.mit.edu	37	chr15	74554835	74554835	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaaggcagtcacatctgtGacctcagagcccaccagagc	9	15	3	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74554835	C	C	74554835	2	2	39	1	0	0	0	0	0	0	0	1	2833	1277	45	4		4	CCDC33	15	74554835	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	21865532	74554835	27976557	246	47602											
ADAMTS7	11173	broad.mit.edu	37	chr15	79083399	79083399	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcactgtgcccttccatAaagagcagcacaggtcatgc	8	14	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79083399	G	G	79083399	1	3	39	0	1	0	0	0	0	0	0	0	271	377	13	5		5	ADAMTS7	15	79083399	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	4528564	79083399	23447993	247	47603											
GRIN2A	2903	broad.mit.edu	37	chr16	9934978	9934978	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgctgtaaagaaaaacccCaagaccacagaatgttagca	7	9	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9934978	T	T	9934978	1	4	39	0	1	0	0	0	0	0	0	0	6845	609	21	4		4	GRIN2A	16	9934978	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08		9934978	80419775	248	47604											
IL27	246778	broad.mit.edu	37	chr16	28515315	28515315	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcctccctgggggccttgGgaatccccagacaccagctt	13	15	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28515315	A	A	28515315	3	1	39	1	0	0	0	0	1	0	0	0	7750	1232	43	4	659	4	IL27	16	28515315	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	18580337	28515315	61839438	249	47605											
ITGAX	3687	broad.mit.edu	37	chr16	31374174	31374174	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggccttgggggaggtcctGgtacctggggagaggtggga	22	6	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31374174	A	A	31374174	1	1	39	0	1	0	0	0	0	0	0	0	7959	1363	47	4		4	ITGAX	16	31374174	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	2858859	31374174	58980579	250	47606											
ABCC12	94160	broad.mit.edu	37	chr16	48119457	48119457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggattgagtggcgctgCgggaaatatccaaaatttga	12	7	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48119457	A	A	48119457	1	1	39	0	1	0	0	0	0	0	0	0	52	783	27	3		3	ABCC12	16	48119457	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	16745283	48119457	42235296	251	47607											
ZNF423	23090	broad.mit.edu	37	chr16	49672250	49672250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcctccgtctggctgaaGgtgtcctcgcagtagtcgca	12	13	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49672250	T	T	49672250	2	4	39	1	0	0	0	0	0	0	0	1	18025	987	35	2		2	ZNF423	16	49672250	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1552793	49672250	40682503	252	47608											
CDH13	1012	broad.mit.edu	37	chr16	82689192	82689192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagtgatgggaaaccactGgtggggttgggggagggcaa	21	4	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82689192	T	T	82689192	1	4	39	0	1	0	0	0	0	0	0	0	3129	1363	47	2		2	CDH13	16	82689192	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	33016942	82689192	7665561	253	47609											
TP53	7157	broad.mit.edu	37	chr17	7578479	7578479	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgcgggtgccgggcggggGtgtggaatcaacccacagct	18	11	1	0	rs28934874		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578479	A	A	7578479	3	1	39	1	0	0	0	0	1	0	0	0	16505	1261	44	4	847	4	TP53	17	7578479	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08		7578479	73616731	254	47610											
ALOXE3	59344	broad.mit.edu	37	chr17	8011889	8011889	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgggataatagtagccCacgatttctgagacaaagct	9	9	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8011889	A	A	8011889	2	1	39	1	0	0	0	0	0	0	0	1	542	581	21	2		2	ALOXE3	17	8011889	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	433410	8011889	73183321	255	47611											
MYH1	4619	broad.mit.edu	37	chr17	10403943	10403943	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtactggtacatggcccacCtgattctgtttgcaggcgcg	12	11	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10403943	T	T	10403943	3	4	39	1	0	0	0	0	1	0	0	0	10123	695	24	4	2006	4	MYH1	17	10403943	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2392054	10403943	70791267	256	47612											
ZNF287	57336	broad.mit.edu	37	chr17	16456596	16456596	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctctttcatcagtgtgaAttttccagaagccacctttt	5	11	3	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16456596	C	C	16456596	3	2	39	1	0	0	0	0	1	0	0	0	17951	101	4	5	1429	5	ZNF287	17	16456596	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	6052653	16456596	64738614	257	47613											
B9D1	27077	broad.mit.edu	37	chr17	19263678	19263678	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacaaagcagtacttgcaGtagaggtcatcatactctgg	9	9	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19263678	T	T	19263678	4	4	39	1	0	0	0	0	0	1	0	0	1282	1024	36	3	551	3	B9D1	17	19263678	Nonsense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	2807082	19263678	61931532	258	47614											
KCNJ12	3768	broad.mit.edu	37	chr17	21319507	21319507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgctcttcggcatcagcCggcaggacctggagacggac	14	15	2	1	rs143946927	byFrequency	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21319507	A	A	21319507	2	1	39	1	0	0	0	0	0	0	0	1	8116	643	23	1		1	KCNJ12	17	21319507	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2055829	21319507	59875703	259	47615											
ACCN1	40	broad.mit.edu	37	chr17	32483211	32483211	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttgacatccagcagggccAgcagctccccagcatggtac	12	14	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32483211	T	T	32483211	3	4	39	1	0	0	0	0	1	0	0	0	128	188	7	5	1949	5	ACCN1	17	32483211	Missense_Mutation	SNP	A	TCGA-17-Z005-01A-01W-0746-08	11163704	32483211	48711999	260	47616											
KRT10	3858	broad.mit.edu	37	chr17	38974758	38974758	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaatgatggaaaaaaaaTtttaaacagtctgtagggat	10	2	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38974758	A	A	38974758	1	1	39	0	1	0	0	0	0	0	0	0	8519	1508	52	5		5	KRT10	17	38974758	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	6491547	38974758	42220452	261	47617											
KIAA1267	284058	broad.mit.edu	37	chr17	44109534	44109534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccgggctaatggggctcCtaggggactgaccatgggag	17	9	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44109534	A	A	44109534	3	1	39	1	0	0	0	0	1	0	0	0	8289	681	24	2	356	2	KIAA1267	17	44109534	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	5134776	44109534	37085676	262	47618											
TBX4	9496	broad.mit.edu	37	chr17	59555913	59555913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaaaaccaggccagggCcagaagaatgaggtcaaggg	15	7	1	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59555913	A	A	59555913	1	1	39	0	1	0	0	0	0	0	0	0	15782	754	26	3		3	TBX4	17	59555913	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	15446379	59555913	21639297	263	47619											
TBX4	9496	broad.mit.edu	37	chr17	59557500	59557501	+	Frame_Shift_Ins	INS	-	C	C													catgaggcagaggctcatctINSccccccagctctcagccaca							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59557501	C	C	59557500	7	5	39	1	0	1	1	0	0	0	0	0	15782	1551	54	0	867	0	TBX4	17	59557500	Frame_Shift_Ins	INS	-	TCGA-17-Z005-01A-01W-0746-08	1587	59557500	21637710	264	47620											
RGS9	8787	broad.mit.edu	37	chr17	63186152	63186152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccactgtgggcctgaccCactggtactgagggggctgg	16	11	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63186152	A	A	63186152	1	1	39	0	1	0	0	0	0	0	0	0	13422	609	21	2		2	RGS9	17	63186152	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	3628652	63186152	18009058	265	47621											
ELAC1	55520	broad.mit.edu	37	chr18	48513137	48513137	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgactgctctggggttgtGggtgatggaggagtaaaact	18	4	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48513137	C	C	48513137	2	2	39	1	0	0	0	0	0	0	0	1	5088	1335	47	4		4	ELAC1	18	48513137	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08		48513137	29564111	266	47622											
SERPINB4	6318	broad.mit.edu	37	chr18	61310552	61310552	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcacagccccctgtgctAcccatcagaccaccacatct	5	20	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61310552	G	G	61310552	1	3	39	0	1	0	0	0	0	0	0	0	14216	406	14	5		5	SERPINB4	18	61310552	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	12797415	61310552	16766696	267	47623											
QTRT1	81890	broad.mit.edu	37	chr19	10823377	10823377	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaaggttaggggtggggGgtggggagaatgaagccctg	22	4	0	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10823377	A	A	10823377	1	1	39	0	1	0	0	0	0	0	0	0	12993	1247	43	4		4	QTRT1	19	10823377	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08		10823377	48305606	268	47624											
NPHS1	4868	broad.mit.edu	37	chr19	36336398	36336398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcctggcggcggcggagCctttgaatggggctctccgg	17	13	1	1	rs114615449	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36336398	A	A	36336398	3	1	39	1	0	0	0	0	1	0	0	0	10677	739	26	3	1987	3	NPHS1	19	36336398	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	25513021	36336398	22792585	269	47625											
ZNF420	147923	broad.mit.edu	37	chr19	37580044	37580044	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcgggtaaattggagtttCcttgtgctcttttcacttac	9	9	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37580044	A	A	37580044	1	1	39	0	1	0	0	0	0	0	0	0	18024	870	30	3		3	ZNF420	19	37580044	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1243646	37580044	21548939	270	47626											
RYR1	6261	broad.mit.edu	37	chr19	38959910	38959910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctctgccctgcccacctGccctcacccctgcccatcca	4	25	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38959910	T	T	38959910	1	4	39	0	1	0	0	0	0	0	0	0	13879	1334	46	3		3	RYR1	19	38959910	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1379866	38959910	20169073	271	47627											
CEACAM7	1087	broad.mit.edu	37	chr19	42190824	42190824	+	Silent	SNP	C	A	A													tgtctggttacttcttcattCacaagattttcttttataac							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42190824	A	A	42190824	2	1	39	1	0	0	0	0	0	0	0	1	3227	813	29	3		3	CEACAM7	19	42190824	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	3230914	42190824	16938159	272	47628	234	2									
CEACAM7	1087	broad.mit.edu	37	chr19	42190826	42190826	+	Missense_Mutation	SNP	C	A	A													tctggttacttcttcattcaCaagattttcttttataacgt							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42190826	A	A	42190826	3	1	39	1	0	0	0	0	1	0	0	0	3227	478	17	3	418	3	CEACAM7	19	42190826	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2	42190826	16938157	273	47629	234	2									
CEACAM8	1088	broad.mit.edu	37	chr19	43087881	43087881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattgacagaaggcccagGtcagtgcattccaaattgac	10	10	1	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43087881	T	T	43087881	1	4	39	0	1	0	0	0	0	0	0	0	3228	1276	44	3		3	CEACAM8	19	43087881	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	897055	43087881	16041102	274	47630											
OPA3	80207	broad.mit.edu	37	chr19	46056784	46056784	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagctcctatttcttggaCgcaggcactgcgtgggaagc	13	11	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46056784	T	T	46056784	2	4	39	1	0	0	0	0	0	0	0	1	10966	523	19	4		4	OPA3	19	46056784	Silent	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2968903	46056784	13072199	275	47631											
EML2	24139	broad.mit.edu	37	chr19	46125009	46125009	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacccacttttccaccTtttttttttttttgagacgg	4	11	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46125009	C	C	46125009	1	2	39	0	1	0	0	0	0	0	0	0	5139	1624	56	5		5	EML2	19	46125009	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	68225	46125009	13003974	276	47632											
ZNF350	59348	broad.mit.edu	37	chr19	52471689	52471689	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaactctaaattcctacAaagaaaaactggtctcacac	3	10	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52471689	C	C	52471689	1	2	39	0	1	0	0	0	0	0	0	0	17989	145	5	5		5	ZNF350	19	52471689	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	6346680	52471689	6657294	277	47633											
KIR3DL1	3811	broad.mit.edu	37	chr19	55332930	55332930	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagagagagcattaggtcaTagagcaggggagtgagttct	16	4	2	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55332930	C	C	55332930	1	2	39	0	1	0	0	0	0	0	0	0	8391	1421	49	5		5	KIR3DL1	19	55332930	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	2861241	55332930	3796053	278	47634											
ZNF470	388566	broad.mit.edu	37	chr19	57089313	57089313	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcagagaattcatactggaGagaaaccttatgaatgtaag	9	5	2	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57089313	A	A	57089313	3	1	39	1	0	0	0	0	1	0	0	0	18056	943	33	4	1530	4	ZNF470	19	57089313	Missense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08	1756383	57089313	2039670	279	47635											
ZNF835	90485	broad.mit.edu	37	chr19	57175469	57175469	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgaagcgcttgccgcaGtcgtggcaggggtaaggccg	17	10	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57175469	A	A	57175469	2	1	39	1	0	0	0	0	0	0	0	1	18315	1020	36	4		4	ZNF835	19	57175469	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	86156	57175469	1953514	280	47636											
ZNF835	90485	broad.mit.edu	37	chr19	57184330	57184330	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagggatagatagaggatgGggaaaggggagaaaaggttt	18	1	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57184330	C	C	57184330	1	2	39	0	1	0	0	0	0	0	0	0	18315	1247	43	4		4	ZNF835	19	57184330	5'Flank	SNP	G	TCGA-17-Z005-01A-01W-0746-08	8861	57184330	1944653	281	47637											
OXT	5020	broad.mit.edu	37	chr20	3052951	3052952	+	Intron	INS	-	A	A													gggcaaggcgctccggggccINSagggggaggcgggcgggggt					rs151042392	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3052952	A	A	3052951	6	5	39	0	1	1	1	0	0	0	0	0	11431	609	21	0		0	OXT	20	3052951	Intron	INS	-	TCGA-17-Z005-01A-01W-0746-08		3052951	59972569	282	47638											
CST9	128822	broad.mit.edu	37	chr20	23584335	23584335	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctacatacggtttggcgcaGttgcagattcatggagaaca	11	9	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23584335	A	A	23584335	2	1	39	1	0	0	0	0	0	0	0	1	4013	1020	36	4		4	CST9	20	23584335	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08	20531384	23584335	39441185	283	47639											
C20orf186	149954	broad.mit.edu	37	chr20	31674033	31674033	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggtctgtctttggcaaacAacatgacgtcacccacctgc	8	13	3	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31674033	T	T	31674033	1	4	39	0	1	0	0	0	0	0	0	0	2120	145	5	5		5	C20orf186	20	31674033	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	8089698	31674033	31351487	284	47640											
PKIG	11142	broad.mit.edu	37	chr20	43239145	43239145	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctctctctctctctcacAcacacacacacacacacaca	0	20	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43239145	T	T	43239145	1	4	39	0	1	0	0	0	0	0	0	0	12070	174	6	5		5	PKIG	20	43239145	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	11565112	43239145	19786375	285	47641											
SPINLW1	57119	broad.mit.edu	37	chr20	44175775	44175775	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggagggatcttacaaatatCtctctcctctcccaacccgg	7	14	4	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44175775	G	G	44175775	1	3	39	0	1	0	0	0	0	0	0	0	15185	928	32	4		4	SPINLW1	20	44175775	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	936630	44175775	18849745	286	47642											
PREX1	57580	broad.mit.edu	37	chr20	47296465	47296465	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcactgaaaccccacgaGgtgggtgctatgacttcccc	9	13	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47296465	A	A	47296465	1	1	39	0	1	0	0	0	0	0	0	0	12582	1015	35	4		4	PREX1	20	47296465	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	3120690	47296465	15729055	287	47643											
PREX1	57580	broad.mit.edu	37	chr20	47339016	47339016	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggatggacagtaagtgttTataggtctggggtttctttt	14	3	2	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47339016	C	C	47339016	1	2	39	0	1	0	0	0	0	0	0	0	12582	1769	61	5		5	PREX1	20	47339016	Intron	SNP	T	TCGA-17-Z005-01A-01W-0746-08	42551	47339016	15686504	288	47644											
MOCS3	27304	broad.mit.edu	37	chr20	49575867	49575867	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacactcaggcccttacgcCagccactgccctagacctgg	9	17	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49575867	T	T	49575867	3	4	39	1	0	0	0	0	1	0	0	0	9786	594	21	4	490	4	MOCS3	20	49575867	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	2236851	49575867	13449653	289	47645											
TIAM1	7074	broad.mit.edu	37	chr21	32525499	32525499	+	Intron	DEL	A	-	-													gcttatgtgttttattttttAtataccctagaacttaaagt							TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32525499	-	-	32525499	6	5	39	0	1	1	0	1	0	0	0	0	16013	464	16	0		0	TIAM1	21	32525499	Intron	DEL	A	TCGA-17-Z005-01A-01W-0746-08		32525499	15604396	290	47646											
DSCAM	1826	broad.mit.edu	37	chr21	41559242	41559242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagagctctgacataaaaCgctagtggaaatgctgagcg	11	8	1	3	rs79855637	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41559242	A	A	41559242	1	1	39	0	1	0	0	0	0	0	0	0	4808	551	19	3		3	DSCAM	21	41559242	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	9033743	41559242	6570653	291	47647											
TMPRSS2	7113	broad.mit.edu	37	chr21	42866376	42866376	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcggggcgtactggggcaCgggggacgggtagtactgag	20	9	0	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42866376	T	T	42866376	3	4	39	1	0	0	0	0	1	0	0	0	16370	536	19	4	1381	4	TMPRSS2	21	42866376	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	1307134	42866376	5263519	292	47648											
RASD2	23551	broad.mit.edu	37	chr22	35947786	35947786	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgagaactgcgcctacttcGaggtgtcggccaagaagaac	12	11	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35947786	T	T	35947786	4	4	39	1	0	0	0	0	0	1	0	0	13175	1059	37	3	514	3	RASD2	22	35947786	Nonsense_Mutation	SNP	G	TCGA-17-Z005-01A-01W-0746-08		35947786	15356780	293	47649											
MXRA5	25878	broad.mit.edu	37	chrX	3228090	3228090	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgctggtgaccgaaggGccgtactccgtctccatcct	13	13	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3228090	T	T	3228090	2	4	39	1	0	0	0	0	0	0	0	1	10097	1190	42	3		3	MXRA5	23	3228090	Silent	SNP	G	TCGA-17-Z005-01A-01W-0746-08		3228090	152042470	294	47650											
BEND2	139105	broad.mit.edu	37	chrX	18195914	18195914	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaataaagagaaaaaggaAcatccttggttttgtcatgc	8	5	1	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18195914	T	T	18195914	1	4	39	0	1	0	0	0	0	0	0	0	1403	58	2	5		5	BEND2	23	18195914	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	14967824	18195914	137074646	295	47651											
MAGEB18	286514	broad.mit.edu	37	chrX	26157197	26157197	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagctacgcaggccactgTggcagaaggagagtcaccct	15	11	1	2			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26157197	A	A	26157197	3	1	39	1	0	0	0	0	1	0	0	0	9267	1696	59	5	97	5	MAGEB18	23	26157197	Missense_Mutation	SNP	T	TCGA-17-Z005-01A-01W-0746-08	7961283	26157197	129113363	296	47652											
SSX5	6758	broad.mit.edu	37	chrX	48053559	48053559	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccagccccttcccatctActcaccctgattcccacggt	4	19	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48053559	G	G	48053559	1	3	39	0	1	0	0	0	0	0	0	0	15326	406	14	5		5	SSX5	23	48053559	Intron	SNP	A	TCGA-17-Z005-01A-01W-0746-08	21896362	48053559	107217001	297	47653											
PFKFB1	5207	broad.mit.edu	37	chrX	54975459	54975459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacccaggggataatccCagactcaagtcacccccaca	8	16	2	1			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54975459	A	A	54975459	1	1	39	0	1	0	0	0	0	0	0	0	11855	609	21	2		2	PFKFB1	23	54975459	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	6921900	54975459	100295101	298	47654											
MTMR8	55613	broad.mit.edu	37	chrX	63473359	63473359	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggttttttatggttttagGtctaacgtttaaatatttaa	7	2	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63473359	A	A	63473359	1	1	39	0	1	0	0	0	0	0	0	0	10043	1276	44	4		4	MTMR8	23	63473359	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	8497900	63473359	91797201	299	47655											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912915	77912915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgctacatgaccctcccCttggcagagttgatggatgc	12	11	0	3			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77912915	A	A	77912915	3	1	39	1	0	0	0	0	1	0	0	0	17717	681	24	2	428	2	ZCCHC5	23	77912915	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	14439556	77912915	77357645	300	47656											
DACH2	117154	broad.mit.edu	37	chrX	85559819	85559819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttgcagagacccagagGcacagagaagaccaatggta	11	9	0	4			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85559819	T	T	85559819	1	4	39	0	1	0	0	0	0	0	0	0	4254	1218	42	3		3	DACH2	23	85559819	Intron	SNP	G	TCGA-17-Z005-01A-01W-0746-08	7646904	85559819	69710741	301	47657											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299692	125299692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtagccccgcagctcgccCtcgaagccctggagcccggc	13	19	0	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299692	A	A	125299692	3	1	39	1	0	0	0	0	1	0	0	0	4298	680	24	2	1179	2	DCAF12L2	23	125299692	Missense_Mutation	SNP	C	TCGA-17-Z005-01A-01W-0746-08	39739873	125299692	29970868	302	47658											
L1CAM	3897	broad.mit.edu	37	chrX	153130247	153130247	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccggctggccggggcctcCctgttggcaggtcattcctc	13	16	1	0			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153130247	T	T	153130247	1	4	39	0	1	0	0	0	0	0	0	0	8660	638	22	4		4	L1CAM	23	153130247	Intron	SNP	C	TCGA-17-Z005-01A-01W-0746-08	27830555	153130247	2140313	303	47659											
PRDM16	63976	broad.mit.edu	37	chr1	3327964	3327964	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaggtgaggtctgccacaaGtcctacacgcagttctccaa	9	12	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3327964	C	C	3327964	3	2	40	1	0	0	0	0	1	0	0	0	12563	1020	36	4	1237	4	PRDM16	1	3327964	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08		3327964	245922657	1	47660											
SLC9A1	6548	broad.mit.edu	37	chr1	27436121	27436121	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggatgtgggaggtaaatcGggaggtgaaggctgcgatga	19	5	0	2	rs150618776		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27436121	A	A	27436121	4	1	40	1	0	0	0	0	0	1	0	0	14823	1124	39	4	1526	4	SLC9A1	1	27436121	Nonsense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	24108157	27436121	221814500	2	47661											
SCMH1	22955	broad.mit.edu	37	chr1	41582539	41582539	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaaatgtggacatcaaagtCtcaatatttgaccttaagca	7	7	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41582539	G	G	41582539	1	3	40	0	1	0	0	0	0	0	0	0	14021	928	32	4		4	SCMH1	1	41582539	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	14146418	41582539	207668082	3	47662											
LEPRE1	64175	broad.mit.edu	37	chr1	43213468	43213468	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatttaggtaaaggatggCgctgggaaaggcagagacat	14	7	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43213468	T	T	43213468	3	4	40	1	0	0	0	0	1	0	0	0	8801	782	27	4	401	4	LEPRE1	1	43213468	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1630929	43213468	206037153	4	47663											
FGGY	55277	broad.mit.edu	37	chr1	59838938	59838938	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcattcttatacaccaataAcagacaaacagccaaatcat	3	11	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59838938	G	G	59838938	1	3	40	0	1	0	0	0	0	0	0	0	5928	58	2	5		5	FGGY	1	59838938	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	16625470	59838938	189411683	5	47664											
TNNI3K	51086	broad.mit.edu	37	chr1	74864318	74864318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccttccccctcccaactGccactgccgggaatgtggtc	10	17	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74864318	T	T	74864318	1	4	40	0	1	0	0	0	0	0	0	0	16452	1334	46	3		3	TNNI3K	1	74864318	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	15025380	74864318	174386303	6	47665											
DDAH1	23576	broad.mit.edu	37	chr1	85797610	85797610	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcaaggtagacagcctggCtggaatcagctgggagccca	15	10	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85797610	T	T	85797610	1	4	40	0	1	0	0	0	0	0	0	0	4354	812	28	4		4	DDAH1	1	85797610	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10933292	85797610	163453011	7	47666											
CLCA4	22802	broad.mit.edu	37	chr1	87018365	87018365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcggacttgcagatggaGctggggcacggggtgaccgg	19	8	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87018365	T	T	87018365	1	4	40	0	1	0	0	0	0	0	0	0	3490	986	34	3		3	CLCA4	1	87018365	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1220755	87018365	162232256	8	47667											
CCBL2	56267	broad.mit.edu	37	chr1	89418695	89418695	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatatgcaatataaaagtaAtaccttcaccaaaagacaat	3	7	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89418695	C	C	89418695	1	2	40	0	1	0	0	0	0	0	0	0	2759	116	4	5		5	CCBL2	1	89418695	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	2400330	89418695	159831926	9	47668											
TMEM56	148534	broad.mit.edu	37	chr1	95603248	95603248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctctctgtccttcttTcctcctcctcttcttttctc	1	18	6	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95603248	C	C	95603248	1	2	40	0	1	0	0	0	0	0	0	0	16306	1798	62	5		5	TMEM56	1	95603248	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	6184553	95603248	153647373	10	47669											
DPYD	1806	broad.mit.edu	37	chr1	98187108	98187108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaatattaatgggtccCtcttcagtggcatataaatt	6	10	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98187108	A	A	98187108	3	1	40	1	0	0	0	0	1	0	0	0	4785	680	24	2	2755	2	DPYD	1	98187108	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	2583860	98187108	151063513	11	47670											
COL11A1	1301	broad.mit.edu	37	chr1	103379123	103379123	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttttcaaaggctgattacTtctaattatctcattaaaat	4	6	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103379123	G	G	103379123	1	3	40	0	1	0	0	0	0	0	0	0	3699	1624	56	5		5	COL11A1	1	103379123	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	5192015	103379123	145871498	12	47671											
FAM102B	284611	broad.mit.edu	37	chr1	109168428	109168428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	21	0	0	0	rs58733075		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109168428	T	T	109168428	1	4	40	0	1	0	0	0	0	0	0	0	5429	1392	48	3		3	FAM102B	1	109168428	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	5789305	109168428	140082193	13	47672											
SYT6	148281	broad.mit.edu	37	chr1	114640308	114640308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattctccagcccacactgCcatgcagcaaacatgccaag	6	17	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114640308	A	A	114640308	1	1	40	0	1	0	0	0	0	0	0	0	15597	754	26	3		3	SYT6	1	114640308	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	5471880	114640308	134610313	14	47673											
GJA8	2703	broad.mit.edu	37	chr1	147380379	147380379	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggggcacgcggtgcactaCgtccgcatggaggagaagcg	18	10	0	1	rs142426709		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147380379	T	T	147380379	2	4	40	1	0	0	0	0	0	0	0	1	6469	547	19	4		4	GJA8	1	147380379	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08	32740071	147380379	101870242	15	47674											
FLG	2312	broad.mit.edu	37	chr1	152275390	152275390	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccgtgctgagagtgtctaAacccggattcaccataatca	8	11	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152275390	T	T	152275390	3	4	40	1	0	0	0	0	1	0	0	0	5979	14	1	5	217	5	FLG	1	152275390	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	4895011	152275390	96975231	16	47675											
DCST2	127579	broad.mit.edu	37	chr1	155003251	155003251	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaaccccccagtgcttGggtcaaggtggactgaggag	16	10	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155003251	A	A	155003251	1	1	40	0	1	0	0	0	0	0	0	0	4336	1363	47	4		4	DCST2	1	155003251	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2727861	155003251	94247370	17	47676											
IQGAP3	128239	broad.mit.edu	37	chr1	156524106	156524106	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagccactggcatcccGggcctccagggcccggttaa	12	16	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156524106	A	A	156524106	3	1	40	1	0	0	0	0	1	0	0	0	7886	1115	39	4	3630	4	IQGAP3	1	156524106	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1520855	156524106	92726515	18	47677											
MPZL1	9019	broad.mit.edu	37	chr1	167743713	167743713	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtgttcaaattcagatAttacttgcttggaatgcttc	8	6	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167743713	C	C	167743713	1	2	40	0	1	0	0	0	0	0	0	0	9843	464	16	5		5	MPZL1	1	167743713	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	11219607	167743713	81506908	19	47678											
NME7	29922	broad.mit.edu	37	chr1	169319479	169319479	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagaaagaaagaaagaaAgaaagaaggaaggaaggaag	14	0	0	6			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169319479	G	G	169319479	1	3	40	0	1	0	0	0	0	0	0	0	10591	87	3	5		5	NME7	1	169319479	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	1575766	169319479	79931142	20	47679											
RFWD2	64326	broad.mit.edu	37	chr1	176092144	176092144	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaaaataagttaaagtTtcagttcattacacaacgtg	5	8	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176092144	C	C	176092144	1	2	40	0	1	0	0	0	0	0	0	0	13368	1856	64	5		5	RFWD2	1	176092144	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	6772665	176092144	73158477	21	47680											
RALGPS2	55103	broad.mit.edu	37	chr1	178861581	178861581	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaattacctagaaaaactTtctttccaagatctaatatg	3	8	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178861581	G	G	178861581	1	3	40	0	1	0	0	0	0	0	0	0	13126	1856	64	5		5	RALGPS2	1	178861581	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	2769437	178861581	70389040	22	47681											
C1orf26	54823	broad.mit.edu	37	chr1	185189667	185189667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctacttttcccccttcagTttgtctatttcatctcctaa	2	14	4	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185189667	C	C	185189667	1	2	40	0	1	0	0	0	0	0	0	0	2057	1740	60	5		5	C1orf26	1	185189667	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	6328086	185189667	64060954	23	47682											
HMCN1	83872	broad.mit.edu	37	chr1	186010097	186010097	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaatctattacacctAccattctcagagacatattg	4	9	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186010097	T	T	186010097	1	4	40	0	1	0	0	0	0	0	0	0	7287	406	14	5		5	HMCN1	1	186010097	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	820430	186010097	63240524	24	47683											
CFH	3075	broad.mit.edu	37	chr1	196695578	196695578	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagacaatttaaccattatTtacatagtatttctactata	2	7	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196695578	G	G	196695578	1	3	40	0	1	0	0	0	0	0	0	0	3313	1856	64	5		5	CFH	1	196695578	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	10685481	196695578	52555043	25	47684											
LHX9	56956	broad.mit.edu	37	chr1	197881778	197881778	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgcgtgtgtgtgcgccTtcgttgggtggaacgaagag	18	6	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197881778	A	A	197881778	1	1	40	0	1	0	0	0	0	0	0	0	8849	1624	56	5		5	LHX9	1	197881778	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	1186200	197881778	51368843	26	47685											
ETNK2	55224	broad.mit.edu	37	chr1	204115885	204115885	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctttgccatttctaaggCgattaacctacagcagggaa	8	9	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204115885	T	T	204115885	3	4	40	1	0	0	0	0	1	0	0	0	5316	768	27	4	658	4	ETNK2	1	204115885	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	6234107	204115885	45134736	27	47686											
CR1L	1379	broad.mit.edu	37	chr1	207825711	207825711	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaataggatgttacttaaaAcatgcaaatcccatttcctc	4	10	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207825711	G	G	207825711	1	3	40	0	1	0	0	0	0	0	0	0	3873	58	2	5		5	CR1L	1	207825711	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	3709826	207825711	41424910	28	47687											
CAMK1G	57172	broad.mit.edu	37	chr1	209764643	209764643	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggccagaagacccaaAcacaagctaccagatgtata	8	10	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209764643	G	G	209764643	1	3	40	0	1	0	0	0	0	0	0	0	2624	58	2	5		5	CAMK1G	1	209764643	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	1938932	209764643	39485978	29	47688											
RRP15	51018	broad.mit.edu	37	chr1	218458934	218458934	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaggggcgactttggcTtagtgaggaggcttggggaa	18	5	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218458934	A	A	218458934	1	1	40	0	1	0	0	0	0	0	0	0	13798	1624	56	5		5	RRP15	1	218458934	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	8694291	218458934	30791687	30	47689											
COG2	22796	broad.mit.edu	37	chr1	230788298	230788298	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatggacatacattttcaaCccatttggctaaatacggag	8	8	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230788298	T	T	230788298	1	4	40	0	1	0	0	0	0	0	0	0	3690	522	18	4		4	COG2	1	230788298	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	12329364	230788298	18462323	31	47690											
ARV1	64801	broad.mit.edu	37	chr1	231125836	231125836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccttacctaattgaatgGcaatgtctttgactatcaga	6	8	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231125836	T	T	231125836	1	4	40	0	1	0	0	0	0	0	0	0	1006	1218	42	3		3	ARV1	1	231125836	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	337538	231125836	18124785	32	47691											
TARBP1	6894	broad.mit.edu	37	chr1	234529569	234529569	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccgcttggttatctgcttCgaccaaattagtacctggga	9	11	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234529569	T	T	234529569	3	4	40	1	0	0	0	0	1	0	0	0	15674	893	31	4	623	4	TARBP1	1	234529569	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	3403733	234529569	14721052	33	47692											
RYR2	6262	broad.mit.edu	37	chr1	237759000	237759000	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcttctagggaggaagacTtctttcccccattaaaggaa	9	9	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237759000	G	G	237759000	1	3	40	0	1	0	0	0	0	0	0	0	13880	1624	56	5		5	RYR2	1	237759000	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	3229431	237759000	11491621	34	47693											
FMN2	56776	broad.mit.edu	37	chr1	240387898	240387898	+	Intron	SNP	A	G	G													gttgacagtggggtgttaaaAtctcccactattattgtgtg							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240387898	G	G	240387898	1	3	40	0	1	0	0	0	0	0	0	0	6008	116	4	5		5	FMN2	1	240387898	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	2628898	240387898	8862723	35	47694	235	2									
FMN2	56776	broad.mit.edu	37	chr1	240387906	240387906	+	Intron	SNP	C	T	T													tggggtgttaaaatctcccaCtattattgtgtgggagtcta							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240387906	T	T	240387906	1	4	40	0	1	0	0	0	0	0	0	0	6008	580	20	4		4	FMN2	1	240387906	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	8	240387906	8862715	36	47695	235	2									
KMO	8564	broad.mit.edu	37	chr1	241715312	241715313	+	Intron	INS	-	GG	GG													acaaggaatgtcctgaggaaINSggccaagtcatcatagccgc					rs147430596	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	241715313	GG	GG	241715312	6	5	40	0	1	1	1	0	0	0	0	0	8495	87	3	0		0	KMO	1	241715312	Intron	INS	-	TCGA-17-Z007-01A-01W-0746-08	1327406	241715312	7535309	37	47696											
PPPDE1	51029	broad.mit.edu	37	chr1	244857682	244857682	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaactttagtattcataaaaTttttttttttaaaccggaac	3	5	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244857682	A	A	244857682	1	1	40	0	1	0	0	0	0	0	0	0	12509	1508	52	5		5	PPPDE1	1	244857682	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	3142370	244857682	4392939	38	47697											
OR2L13	284521	broad.mit.edu	37	chr1	248223941	248223941	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgaatttctgtgcttaacTtacccttgtgtctcccttca	6	12	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248223941	C	C	248223941	1	2	40	0	1	0	0	0	0	0	0	0	11100	1624	56	5		5	OR2L13	1	248223941	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	3366259	248223941	1026680	39	47698											
PGBD2	267002	broad.mit.edu	37	chr1	249211872	249211872	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttaaactgatgtccattttGaggaaaaagggggtgaaagc	13	4	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249211872	A	A	249211872	2	1	40	1	0	0	0	0	0	0	0	1	11876	1281	45	4		4	PGBD2	1	249211872	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	987931	249211872	38749	40	47699											
VSNL1	7447	broad.mit.edu	37	chr2	17834083	17834083	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttctttctgcctggctcCctctctggtcctctgccccg	8	18	4	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17834083	T	T	17834083	1	4	40	0	1	0	0	0	0	0	0	0	17354	638	22	4		4	VSNL1	2	17834083	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		17834083	225365290	41	47700											
MRPL33	9553	broad.mit.edu	37	chr2	28002278	28002278	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaataattttctgccacaAtttttttttctccctccata	1	11	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28002278	G	G	28002278	1	3	40	0	1	0	0	0	0	0	0	0	9890	116	4	5		5	MRPL33	2	28002278	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	10168195	28002278	215197095	42	47701											
LTBP1	4052	broad.mit.edu	37	chr2	33500077	33500077	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacctctgctcccagggccGctgtgaaaacaccgagggaa	11	14	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33500077	A	A	33500077	3	1	40	1	0	0	0	0	1	0	0	0	9160	1087	38	4	2910	4	LTBP1	2	33500077	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	5497799	33500077	209699296	43	47702											
PRKCE	5581	broad.mit.edu	37	chr2	45947325	45947325	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactgtagcaaggtgcagtAggtgagggaaacaagacttc	14	6	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45947325	G	G	45947325	1	3	40	0	1	0	0	0	0	0	0	0	12617	435	15	5		5	PRKCE	2	45947325	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	12447248	45947325	197252048	44	47703											
CNTNAP5	129684	broad.mit.edu	37	chr2	125470812	125470812	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgtttctttctttctttCtttctttctctttctttctt	1	11	9	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125470812	T	T	125470812	1	4	40	0	1	0	0	0	0	0	0	0	3682	928	32	4		4	CNTNAP5	2	125470812	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	79523487	125470812	117728561	45	47704											
FMNL2	114793	broad.mit.edu	37	chr2	153476138	153476138	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggccctgcagctgagacTgtaccagctcctcccttagc	9	17	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153476138	A	A	153476138	2	1	40	1	0	0	0	0	0	0	0	1	6010	1567	55	5		5	FMNL2	2	153476138	Silent	SNP	T	TCGA-17-Z007-01A-01W-0746-08	28005326	153476138	89723235	46	47705											
CCDC148	130940	broad.mit.edu	37	chr2	159255858	159255858	+	Intron	SNP	A	C	C													agagaatattaggccaatatAcctgatgaatatcaatggga							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159255858	C	C	159255858	1	2	40	0	1	0	0	0	0	0	0	0	2808	406	14	5		5	CCDC148	2	159255858	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	5779720	159255858	83943515	47	47706	236	2									
CCDC148	130940	broad.mit.edu	37	chr2	159255860	159255860	+	Intron	SNP	C	T	T													agaatattaggccaatatacCtgatgaatatcaatgggaaa							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159255860	T	T	159255860	1	4	40	0	1	0	0	0	0	0	0	0	2808	696	24	4		4	CCDC148	2	159255860	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	2	159255860	83943513	48	47707	236	2									
DPP4	1803	broad.mit.edu	37	chr2	162865189	162865189	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactaaggaatggaaacagTtatttttatggaggtaaaag	11	2	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162865189	A	A	162865189	1	1	40	0	1	0	0	0	0	0	0	0	4769	1740	60	5		5	DPP4	2	162865189	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	3609329	162865189	80334184	49	47708											
SLC38A11	151258	broad.mit.edu	37	chr2	165793987	165793987	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggtttaggacagaaattatTttatttaaaatgttaagtct	7	3	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165793987	G	G	165793987	1	3	40	0	1	0	0	0	0	0	0	0	14717	1856	64	5		5	SLC38A11	2	165793987	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	2928798	165793987	77405386	50	47709											
PDE11A	50940	broad.mit.edu	37	chr2	178575650	178575650	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctgaagttaatcttacCtcttcgttgaggccttctct	6	11	5	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178575650	T	T	178575650	1	4	40	0	1	0	0	0	0	0	0	0	11725	696	24	4		4	PDE11A	2	178575650	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	12781663	178575650	64623723	51	47710											
TTN	7273	broad.mit.edu	37	chr2	179528833	179528833	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagcttcgtgcacttgaaaGatattagtatttttacactc	8	7	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179528833	A	A	179528833	1	1	40	0	1	0	0	0	0	0	0	0	16861	957	33	4		4	TTN	2	179528833	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	953183	179528833	63670540	52	47711											
TTN	7273	broad.mit.edu	37	chr2	179593263	179593263	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcacagctactgcttcCgaagtcattttccaccttga	7	13	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179593263	A	A	179593263	4	1	40	1	0	0	0	0	0	1	0	0	16861	661	23	1	85327	1	TTN	2	179593263	Nonsense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	64430	179593263	63606110	53	47712											
COL5A2	1290	broad.mit.edu	37	chr2	189918217	189918217	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaccctaggaggagacaAagattactgtagctttcaca	10	8	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189918217	C	C	189918217	1	2	40	0	1	0	0	0	0	0	0	0	3729	29	1	5		5	COL5A2	2	189918217	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	10324954	189918217	53281156	54	47713											
TRAK2	66008	broad.mit.edu	37	chr2	202276374	202276374	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgctctttggtgattcccAacttatgagtaaaagtacat	8	8	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202276374	C	C	202276374	1	2	40	0	1	0	0	0	0	0	0	0	16574	145	5	5		5	TRAK2	2	202276374	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	12358157	202276374	40922999	55	47714											
CDK15	65061	broad.mit.edu	37	chr2	202693164	202693164	+	Intron	DEL	A	-	-													gtaggaatgtagagcatctgAaaaaaaaatacacactgtca							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	202693164	-	-	202693164	6	5	40	0	1	1	0	1	0	0	0	0	3161	261	9	0		0	CDK15	2	202693164	Intron	DEL	A	TCGA-17-Z007-01A-01W-0746-08	416790	202693164	40506209	56	47715											
SCG2	7857	broad.mit.edu	37	chr2	224463855	224463855	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatttcaggactgggaaacTtttggacattttccaacctg	8	9	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224463855	G	G	224463855	3	3	40	1	0	0	0	0	1	0	0	0	14003	1609	56	5	1711	5	SCG2	2	224463855	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	21770691	224463855	18735518	57	47716											
PSMD1	5707	broad.mit.edu	37	chr2	231926010	231926010	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctcttctggatgaagatGaaccacagcttaaggtatga	9	7	2	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231926010	T	T	231926010	4	4	40	1	0	0	0	0	0	1	0	0	12798	1291	45	3	52	3	PSMD1	2	231926010	Nonsense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	7462155	231926010	11273363	58	47717											
PASK	23178	broad.mit.edu	37	chr2	242070220	242070222	+	Intron	DEL	AGG	-	-													catgagctagggtgccatccAggaggcttcggttccgagga					rs80351289		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	242070222	-	-	242070220	6	5	40	0	1	1	0	1	0	0	0	0	11566	203	7	0		0	PASK	2	242070220	Intron	DEL	AGG	TCGA-17-Z007-01A-01W-0746-08	10144210	242070220	1129153	59	47718											
IL17RE	132014	broad.mit.edu	37	chr3	9945190	9945190	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaattttcagttcccaacCcgggaagtagcacaatatca	6	11	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9945190	T	T	9945190	1	4	40	0	1	0	0	0	0	0	0	0	7713	638	22	4		4	IL17RE	3	9945190	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		9945190	188077240	60	47719											
SLC6A6	6533	broad.mit.edu	37	chr3	14509475	14509475	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgtacaggcaagtgttgCgccggcgggcctggtggact	16	11	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14509475	T	T	14509475	1	4	40	0	1	0	0	0	0	0	0	0	14802	783	27	4		4	SLC6A6	3	14509475	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	4564285	14509475	183512955	61	47720											
UBP1	7342	broad.mit.edu	37	chr3	33466939	33466939	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagctgctcacagtaaaatTcctacaattttcattaagtt	4	9	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33466939	G	G	33466939	1	3	40	0	1	0	0	0	0	0	0	0	17021	1798	62	5		5	UBP1	3	33466939	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	18957464	33466939	164555491	62	47721											
DCLK3	85443	broad.mit.edu	37	chr3	36756835	36756835	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgactatgatacctgctccAcaaccctcttgtgctggctc	8	14	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36756835	T	T	36756835	3	4	40	1	0	0	0	0	1	0	0	0	4326	159	6	5	19	5	DCLK3	3	36756835	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	3289896	36756835	161265595	63	47722											
KBTBD5	131377	broad.mit.edu	37	chr3	42733406	42733406	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagaaatgggagggtgTcctgcgggagatcgcctatg	18	6	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42733406	C	C	42733406	3	2	40	1	0	0	0	0	1	0	0	0	8066	1667	58	5	1809	5	KBTBD5	3	42733406	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	5976571	42733406	155289024	64	47723											
SMARCC1	6599	broad.mit.edu	37	chr3	47705146	47705146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagaggtcccctttgaaCcatcgaagcccccagtcatt	7	15	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47705146	A	A	47705146	1	1	40	0	1	0	0	0	0	0	0	0	14889	522	18	3		3	SMARCC1	3	47705146	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	4971740	47705146	150317284	65	47724											
CDC25A	993	broad.mit.edu	37	chr3	48222382	48222382	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaaaaccaactcaggcctCagcttgggtgaaagaggcaa	11	9	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48222382	A	A	48222382	1	1	40	0	1	0	0	0	0	0	0	0	3092	841	29	3		3	CDC25A	3	48222382	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	517236	48222382	149800048	66	47725											
FRMD4B	23150	broad.mit.edu	37	chr3	69225852	69225852	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaattaatggaaatattaaAagtgaaaaattgttaaggtc	7	1	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69225852	C	C	69225852	1	2	40	0	1	0	0	0	0	0	0	0	6112	29	1	5		5	FRMD4B	3	69225852	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	21003470	69225852	128796578	67	47726											
ROBO1	6091	broad.mit.edu	37	chr3	78795962	78795962	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggtgggctcaggatgGcctcgtggaggttggcattc	17	7	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78795962	T	T	78795962	2	4	40	1	0	0	0	0	0	0	0	1	13624	1190	42	3		3	ROBO1	3	78795962	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	9570110	78795962	119226468	68	47727											
ROBO1	6091	broad.mit.edu	37	chr3	79736503	79736503	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaccaaaagcaatggcaacAaaagccaaaattgacaaatg	6	9	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79736503	C	C	79736503	1	2	40	0	1	0	0	0	0	0	0	0	13624	145	5	5		5	ROBO1	3	79736503	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	940541	79736503	118285927	69	47728											
MYH15	22989	broad.mit.edu	37	chr3	108118142	108118142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaataacatttggagtgggGgaaatgacacatccaaatta	10	5	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108118142	T	T	108118142	1	4	40	0	1	0	0	0	0	0	0	0	10128	1247	43	2		2	MYH15	3	108118142	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	28381639	108118142	89904288	70	47729											
SLC9A10	285335	broad.mit.edu	37	chr3	111860139	111860139	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactctttcctaatagaagCggaaagaaaaaacaaaaaca	5	7	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111860139	T	T	111860139	1	4	40	0	1	0	0	0	0	0	0	0	14824	783	27	4		4	SLC9A10	3	111860139	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	3741997	111860139	86162291	71	47730											
POLQ	10721	broad.mit.edu	37	chr3	121248522	121248522	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgatgtagattataaaactCtcgagcaatgatatctgcca	7	7	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121248522	G	G	121248522	3	3	40	1	0	0	0	0	1	0	0	0	12303	922	32	4	6790	4	POLQ	3	121248522	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	9388383	121248522	76773908	72	47731											
DNAJC13	23317	broad.mit.edu	37	chr3	132172941	132172941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgtgactcagaaaatcCacaactttttaccattgaat	6	9	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132172941	A	A	132172941	3	1	40	1	0	0	0	0	1	0	0	0	4672	594	21	2	902	2	DNAJC13	3	132172941	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10924419	132172941	65849489	73	47732											
TRIM42	287015	broad.mit.edu	37	chr3	140407231	140407231	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccccgccaaacccacagaCggcctctacacctactggag	7	19	1	1	rs148437702		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140407231	T	T	140407231	2	4	40	1	0	0	0	0	0	0	0	1	16641	535	19	4		4	TRIM42	3	140407231	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08	8234290	140407231	57615199	74	47733											
SLC33A1	9197	broad.mit.edu	37	chr3	155551077	155551077	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataaaaaagtctctttctAtgaacagcagaactcattaa	4	7	3	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155551077	G	G	155551077	1	3	40	0	1	0	0	0	0	0	0	0	14680	464	16	5		5	SLC33A1	3	155551077	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	15143846	155551077	42471353	75	47734											
DGKG	1608	broad.mit.edu	37	chr3	185975737	185975737	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagttcaacctgggaagAagaagaaaggccaaaatggg	12	5	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185975737	G	G	185975737	1	3	40	0	1	0	0	0	0	0	0	0	4509	261	9	5		5	DGKG	3	185975737	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	30424660	185975737	12046693	76	47735											
CD38	952	broad.mit.edu	37	chr4	15815419	15815419	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcattcttttttatgactGcatagtattccatggtgtat	6	7	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15815419	A	A	15815419	1	1	40	0	1	0	0	0	0	0	0	0	3039	1334	46	4		4	CD38	4	15815419	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08		15815419	175338857	77	47736											
TAPT1	202018	broad.mit.edu	37	chr4	16164811	16164811	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatactaagatttgcttgCcaataataatttaagttttt	5	4	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16164811	T	T	16164811	1	4	40	0	1	0	0	0	0	0	0	0	15673	754	26	4		4	TAPT1	4	16164811	3'UTR	SNP	C	TCGA-17-Z007-01A-01W-0746-08	349392	16164811	174989465	78	47737											
LDB2	9079	broad.mit.edu	37	chr4	16510019	16510019	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccatcccaacctctgtcCctgtcttttatccctccccc	2	22	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16510019	T	T	16510019	1	4	40	0	1	0	0	0	0	0	0	0	8768	638	22	4		4	LDB2	4	16510019	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	345208	16510019	174644257	79	47738											
SLIT2	9353	broad.mit.edu	37	chr4	20600074	20600074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgcttaatgaagaactgCttctcctctatcattttatt	4	8	3	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20600074	A	A	20600074	1	1	40	0	1	0	0	0	0	0	0	0	14854	812	28	3		3	SLIT2	4	20600074	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	4090055	20600074	170554202	80	47739											
LIMCH1	22998	broad.mit.edu	37	chr4	41390058	41390058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacttgaacccaagaagCggaggttgcagtgagctgag	13	8	1	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41390058	A	A	41390058	1	1	40	0	1	0	0	0	0	0	0	0	8869	783	27	3		3	LIMCH1	4	41390058	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	20789984	41390058	149764218	81	47740											
LPHN3	23284	broad.mit.edu	37	chr4	62188763	62188763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacgtagagcttcccaaaCcttaattcttgattgctgta	6	10	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62188763	A	A	62188763	1	1	40	0	1	0	0	0	0	0	0	0	9004	522	18	3		3	LPHN3	4	62188763	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	20798705	62188763	128965513	82	47741											
PPEF2	5470	broad.mit.edu	37	chr4	76793210	76793210	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtgtgtgggtcaccttGttagcttgatactgcacaat	12	7	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76793210	A	A	76793210	2	1	40	1	0	0	0	0	0	0	0	1	12404	1368	48	4		4	PPEF2	4	76793210	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	14604447	76793210	114361066	83	47742											
FRAS1	80144	broad.mit.edu	37	chr4	79420851	79420851	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctattctaactggctcttGttttcctaaccatatttcct	4	11	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79420851	C	C	79420851	1	2	40	0	1	0	0	0	0	0	0	0	6102	1392	48	4		4	FRAS1	4	79420851	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2627641	79420851	111733425	84	47743											
FRAS1	80144	broad.mit.edu	37	chr4	79440872	79440872	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgtagaggatggcaagtgAcaaatgagtcctctactgcc	12	9	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79440872	C	C	79440872	1	2	40	0	1	0	0	0	0	0	0	0	6102	290	10	5		5	FRAS1	4	79440872	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	20021	79440872	111713404	85	47744											
MAPK10	5602	broad.mit.edu	37	chr4	87334525	87334525	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacacaggggccagggacccGcttgaggaggcagtctgtcc	15	12	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87334525	A	A	87334525	1	1	40	0	1	0	0	0	0	0	0	0	9364	1102	38	4		4	MAPK10	4	87334525	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	7893653	87334525	103819751	86	47745											
PTPN13	5783	broad.mit.edu	37	chr4	87638144	87638144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactctcatgtttctatcacCtgtgccattatttctttttc	3	11	4	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87638144	A	A	87638144	1	1	40	0	1	0	0	0	0	0	0	0	12888	696	24	2		2	PTPN13	4	87638144	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	303619	87638144	103516132	87	47746											
MEPE	56955	broad.mit.edu	37	chr4	88759878	88759878	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaataactctatttcagctCtataaagaaaaagtcagtaa	4	7	4	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88759878	T	T	88759878	1	4	40	0	1	0	0	0	0	0	0	0	9571	928	32	4		4	MEPE	4	88759878	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1121734	88759878	102394398	88	47747											
NHEDC1	150159	broad.mit.edu	37	chr4	103865368	103865368	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagaaagaagggaacaatcGtcactaggtgaatttgaggg	13	5	1	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103865368	A	A	103865368	1	1	40	0	1	0	0	0	0	0	0	0	10495	1160	40	4		4	NHEDC1	4	103865368	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	15105490	103865368	87288908	89	47748											
NHEDC1	150159	broad.mit.edu	37	chr4	103865386	103865386	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcactaggtgaatttgaGggtggagggtggaaggaggg	20	3	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103865386	A	A	103865386	1	1	40	0	1	0	0	0	0	0	0	0	10495	1015	35	4		4	NHEDC1	4	103865386	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	18	103865386	87288890	90	47749											
ALPK1	80216	broad.mit.edu	37	chr4	113278105	113278105	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaccccccatgacccgagttCgggactggacgtcatagacc	11	15	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113278105	T	T	113278105	1	4	40	0	1	0	0	0	0	0	0	0	544	899	31	4		4	ALPK1	4	113278105	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	9412719	113278105	77876171	91	47750											
TBC1D9	23158	broad.mit.edu	37	chr4	141619120	141619120	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcgcaggcagtttggcactCatggtgggattgctggaaag	15	8	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141619120	A	A	141619120	1	1	40	0	1	0	0	0	0	0	0	0	15749	841	29	3		3	TBC1D9	4	141619120	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	28341015	141619120	49535156	92	47751											
FSTL5	56884	broad.mit.edu	37	chr4	162421035	162421035	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacctaaaaagaataacaccGaatatcatgggtttcataat	5	7	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162421035	T	T	162421035	1	4	40	0	1	0	0	0	0	0	0	0	6140	1073	37	3		3	FSTL5	4	162421035	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	20801915	162421035	28733241	93	47752											
MARCH1	55016	broad.mit.edu	37	chr4	165110911	165110911	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatcaaccaactgtcataAtcaaggtctatgaggatgaa	7	7	4	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165110911	T	T	165110911	1	4	40	0	1	0	0	0	0	0	0	0	9390	116	4	5		5	MARCH1	4	165110911	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	2689876	165110911	26043365	94	47753											
ADCY2	108	broad.mit.edu	37	chr5	7757305	7757305	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttaaaaacataatttcaGgtctgttttaaaagacatac	4	7	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7757305	A	A	7757305	1	1	40	0	1	0	0	0	0	0	0	0	294	1015	35	4		4	ADCY2	5	7757305	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08		7757305	173157955	95	47754											
CDH12	1010	broad.mit.edu	37	chr5	22622961	22622961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgataccaaagcctgGcagaggcacaacaaaaaaag	8	11	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22622961	T	T	22622961	1	4	40	0	1	0	0	0	0	0	0	0	3128	1218	42	3		3	CDH12	5	22622961	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	14865656	22622961	158292299	96	47755											
ADAMTS12	81792	broad.mit.edu	37	chr5	33613397	33613397	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaatattactaaagccccCtaaatgagtgatatagcccc	7	11	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33613397	G	G	33613397	1	3	40	0	1	0	0	0	0	0	0	0	257	696	24	4		4	ADAMTS12	5	33613397	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10990436	33613397	147301863	97	47756											
LIFR	3977	broad.mit.edu	37	chr5	38499604	38499604	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatgttcacagaaaaatTagatatttaccttccaatag	5	6	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38499604	C	C	38499604	1	2	40	0	1	0	0	0	0	0	0	0	8852	1769	61	5		5	LIFR	5	38499604	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	4886207	38499604	142415656	98	47757											
WDR41	55255	broad.mit.edu	37	chr5	76772960	76772960	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagctaactatcctaaatAtatatgcacccaatacagga	5	9	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76772960	G	G	76772960	1	3	40	0	1	0	0	0	0	0	0	0	17421	464	16	5		5	WDR41	5	76772960	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	38273356	76772960	104142300	99	47758											
THBS4	7060	broad.mit.edu	37	chr5	79378987	79378987	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggaagcaatctgtaactGcttttcggaacactaaaacc	7	10	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79378987	A	A	79378987	1	1	40	0	1	0	0	0	0	0	0	0	15979	1334	46	4		4	THBS4	5	79378987	3'UTR	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2606027	79378987	101536273	100	47759											
VCAN	1462	broad.mit.edu	37	chr5	82849190	82849190	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtttcttctcagataccgaGacatgtgactatggctggca	10	9	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82849190	A	A	82849190	2	1	40	1	0	0	0	0	0	0	0	1	17265	933	33	4		4	VCAN	5	82849190	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3470203	82849190	98066070	101	47760											
APC	324	broad.mit.edu	37	chr5	112175212	112175216	+	Frame_Shift_Del	DEL	AAAAG	-	-													accctgcaaatagcagaaatAaaagaaaagattggaactag							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112175216	-	-	112175212	7	5	40	1	0	1	0	1	0	0	0	0	765	352	13	0	3979	0	APC	5	112175212	Frame_Shift_Del	DEL	AAAAG	TCGA-17-Z007-01A-01W-0746-08	29326022	112175212	68740048	102	47761											
COMMD10	51397	broad.mit.edu	37	chr5	115420694	115420694	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttccgtccgccgcggccGccattggctgggttcggcgc	15	16	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115420694	A	A	115420694	1	1	40	0	1	0	0	0	0	0	0	0	3747	1102	38	4		4	COMMD10	5	115420694	5'Flank	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3245482	115420694	65494566	103	47762											
ALDH7A1	501	broad.mit.edu	37	chr5	125928432	125928432	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacactggcctaaattaagAattagggggacagaaagggg	13	7	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125928432	G	G	125928432	1	3	40	0	1	0	0	0	0	0	0	0	504	261	9	5		5	ALDH7A1	5	125928432	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	10507738	125928432	54986828	104	47763											
RAPGEF6	51735	broad.mit.edu	37	chr5	131007115	131007115	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaacaatgatctcttttAtactaaccttcagagaacag	5	10	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131007115	G	G	131007115	1	3	40	0	1	0	0	0	0	0	0	0	13156	464	16	5		5	RAPGEF6	5	131007115	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	5078683	131007115	49908145	105	47764											
SPOCK1	6695	broad.mit.edu	37	chr5	136324155	136324155	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accactcattgttagaaagcTtgccatccttgaaggagtca	8	10	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136324155	C	C	136324155	3	2	40	1	0	0	0	0	1	0	0	0	15197	1609	56	5	451	5	SPOCK1	5	136324155	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	5317040	136324155	44591105	106	47765											
PCDHA3	56145	broad.mit.edu	37	chr5	140182819	140182819	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggcacccaaggcctcGtcccaggcgtccgctggcgc	14	18	0	0	rs34395025	byFrequency;by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140182819	A	A	140182819	2	1	40	1	0	0	0	0	0	0	0	1	11619	1132	40	4		4	PCDHA3	5	140182819	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3858664	140182819	40732441	107	47766											
PCDHA11	56138	broad.mit.edu	37	chr5	140250075	140250075	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccgagtacaccgtgttcGtgaaggagaacaacccacca	10	13	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140250075	A	A	140250075	3	1	40	1	0	0	0	0	1	0	0	0	11615	1145	40	4	1389	4	PCDHA11	5	140250075	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	67256	140250075	40665185	108	47767											
PCDHB1	29930	broad.mit.edu	37	chr5	140432692	140432692	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcactgagtagccaagTtactgtcagagtggttgtcc	11	10	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140432692	G	G	140432692	3	3	40	1	0	0	0	0	1	0	0	0	11628	1725	60	5	1639	5	PCDHB1	5	140432692	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	182617	140432692	40482568	109	47768											
WWC1	23286	broad.mit.edu	37	chr5	167861375	167861376	+	Intron	INS	-	G	G													aagtgagatgggaggaaaaaINSggcctgtcctctcccacgca					rs144243144	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167861376	G	G	167861375	6	5	40	0	1	1	1	0	0	0	0	0	17538	87	3	0		0	WWC1	5	167861375	Intron	INS	-	TCGA-17-Z007-01A-01W-0746-08	27428683	167861375	13053885	110	47769											
KCNIP1	30820	broad.mit.edu	37	chr5	169779473	169779473	+	5'Flank	DEL	C	-	-													aacacggggtaaaaatcagaCctgatacatgagttctggct							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169779473	-	-	169779473	6	5	40	0	1	1	0	1	0	0	0	0	8109	522	18	0		0	KCNIP1	5	169779473	5'Flank	DEL	C	TCGA-17-Z007-01A-01W-0746-08	1918098	169779473	11135787	111	47770											
TPMT	7172	broad.mit.edu	37	chr6	18130960	18130960	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caattccccaacttttatgtCgttcttcaaaagcatcaacc	3	13	3	0	rs139392616		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18130960	T	T	18130960	3	4	40	1	0	0	0	0	1	0	0	0	16533	884	31	4	64	4	TPMT	6	18130960	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08		18130960	152984107	112	47771											
SLC17A2	10246	broad.mit.edu	37	chr6	25921137	25921137	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgaatttttcagcagtacTttttctctctcttccccaaa	4	11	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25921137	C	C	25921137	1	2	40	0	1	0	0	0	0	0	0	0	14530	1624	56	5		5	SLC17A2	6	25921137	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	7790177	25921137	145193930	113	47772											
COL11A2	1302	broad.mit.edu	37	chr6	33139548	33139548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggcctgggcgccctggcGgaccaatgggtccccctgat	16	15	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33139548	A	A	33139548	3	1	40	1	0	0	0	0	1	0	0	0	3700	1116	39	4	2218	4	COL11A2	6	33139548	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	7218411	33139548	137975519	114	47773											
NUDT3	11165	broad.mit.edu	37	chr6	34312583	34312583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactacaggcacctgtcacCacgcccagttaattttttgt	8	12	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34312583	A	A	34312583	1	1	40	0	1	0	0	0	0	0	0	0	10835	609	21	2		2	NUDT3	6	34312583	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1173035	34312583	136802484	115	47774											
BTBD9	114781	broad.mit.edu	37	chr6	38396217	38396217	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgttctctgttgcccaggctGaagtgagtggcatgatcgcg	14	10	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38396217	T	T	38396217	1	4	40	0	1	0	0	0	0	0	0	0	1558	1305	45	3		3	BTBD9	6	38396217	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	4083634	38396217	132718850	116	47775											
C6orf142	90523	broad.mit.edu	37	chr6	53993125	53993125	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaagtgatgggaatttactCagggagagaaggtaaaagta	13	2	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53993125	G	G	53993125	1	3	40	0	1	0	0	0	0	0	0	0	2356	841	29	4		4	C6orf142	6	53993125	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	15596908	53993125	117121942	117	47776											
DST	667	broad.mit.edu	37	chr6	56524488	56524488	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggactttggccttgaaGgaaaggaatgatataaggta	13	4	0	3	rs116419116	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56524488	A	A	56524488	1	1	40	0	1	0	0	0	0	0	0	0	4823	1015	35	4		4	DST	6	56524488	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2531363	56524488	114590579	118	47777											
PRIM2	5558	broad.mit.edu	37	chr6	57509411	57509411	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatctttcttttataaacTatacccataatacagcatca	1	9	3	0	rs147685626	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57509411	C	C	57509411	1	2	40	0	1	0	0	0	0	0	0	0	12597	1537	53	5		5	PRIM2	6	57509411	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	984923	57509411	113605656	119	47778											
PRIM2	5558	broad.mit.edu	37	chr6	57512914	57512914	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catatccagctattttttttCaattttttttgtagaggggg	8	5	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512914	A	A	57512914	1	1	40	0	1	0	0	0	0	0	0	0	12597	841	29	3		3	PRIM2	6	57512914	3'UTR	SNP	C	TCGA-17-Z007-01A-01W-0746-08	3503	57512914	113602153	120	47779											
COL19A1	1310	broad.mit.edu	37	chr6	70778247	70778247	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaaataattattaattttCacaacattctttgtgaggca	4	6	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70778247	A	A	70778247	1	1	40	0	1	0	0	0	0	0	0	0	3708	841	29	3		3	COL19A1	6	70778247	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	13265333	70778247	100336820	121	47780											
RIMS1	22999	broad.mit.edu	37	chr6	72699029	72699029	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtcattattactgccTcaagttccataaactccaga	6	11	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72699029	C	C	72699029	1	2	40	0	1	0	0	0	0	0	0	0	13478	1566	54	5		5	RIMS1	6	72699029	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	1920782	72699029	98416038	122	47781											
C6orf221	154288	broad.mit.edu	37	chr6	74072700	74072700	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccacatattctggctgcGttccagggcgatcctcacca	9	15	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74072700	A	A	74072700	1	1	40	0	1	0	0	0	0	0	0	0	2378	1160	40	4		4	C6orf221	6	74072700	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1373671	74072700	97042367	123	47782											
FILIP1	27145	broad.mit.edu	37	chr6	76022197	76022197	+	Silent	SNP	G	A	A													ttgcttgcaccaggccgtgaGgagaggtgattcctgggaga							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76022197	A	A	76022197	2	1	40	1	0	0	0	0	0	0	0	1	5951	987	35	4		4	FILIP1	6	76022197	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1949497	76022197	95092870	124	47783	237	2									
FILIP1	27145	broad.mit.edu	37	chr6	76022205	76022205	+	Missense_Mutation	SNP	G	C	C													accaggccgtgaggagaggtGattcctgggagagcgaagga							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76022205	C	C	76022205	3	2	40	1	0	0	0	0	1	0	0	0	5951	1290	45	4	306	4	FILIP1	6	76022205	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	8	76022205	95092862	125	47784	237	2									
GRIK2	2898	broad.mit.edu	37	chr6	102426348	102426348	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcatatcatttaattcTgattggcagctgtttggtac	7	8	4	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102426348	G	G	102426348	1	3	40	0	1	0	0	0	0	0	0	0	6840	1595	55	5		5	GRIK2	6	102426348	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	26404143	102426348	68688719	126	47785											
PREP	5550	broad.mit.edu	37	chr6	105741552	105741552	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacatacaatatacataCgtataaatattttatcaaat	2	6	1	0	rs114925291	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105741552	T	T	105741552	1	4	40	0	1	0	0	0	0	0	0	0	12580	551	19	4		4	PREP	6	105741552	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	3315204	105741552	65373515	127	47786											
RNF217	154214	broad.mit.edu	37	chr6	125403751	125403751	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatatgactgtggacaataAagaagatttaaaccaaagtt	8	4	0	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125403751	T	T	125403751	1	4	40	0	1	0	0	0	0	0	0	0	13592	29	1	5		5	RNF217	6	125403751	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	19662199	125403751	45711316	128	47787											
LAMA2	3908	broad.mit.edu	37	chr6	129543644	129543644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatccctcccccctcccccCaccctacgacaggccccggt	5	25	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129543644	T	T	129543644	1	4	40	0	1	0	0	0	0	0	0	0	8678	609	21	4		4	LAMA2	6	129543644	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	4139893	129543644	41571423	129	47788											
MOXD1	26002	broad.mit.edu	37	chr6	132649103	132649103	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaaagacttacaaggtacAaaactttttataaaaatcat	4	5	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132649103	G	G	132649103	1	3	40	0	1	0	0	0	0	0	0	0	9814	145	5	5		5	MOXD1	6	132649103	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	3105459	132649103	38465964	130	47789											
RPS12	6206	broad.mit.edu	37	chr6	133137915	133137915	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggtatacaacaaagattaGtagcaggcttgtaggtgatc	11	5	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133137915	C	C	133137915	1	2	40	0	1	0	0	0	0	0	0	0	13733	1044	36	4		4	RPS12	6	133137915	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	488812	133137915	37977152	131	47790											
CYCS	54205	broad.mit.edu	37	chr7	25163649	25163649	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagaccatggagatttggCccagtcttgtgcttgcctcc	11	11	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25163649	T	T	25163649	2	4	40	1	0	0	0	0	0	0	0	1	4169	726	26	4		4	CYCS	7	25163649	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08		25163649	133975014	132	47791											
PDE1C	5137	broad.mit.edu	37	chr7	31926457	31926457	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttttcagaatagatcttttCggatcttttcagaatagatc	6	7	4	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31926457	T	T	31926457	1	4	40	0	1	0	0	0	0	0	0	0	11729	899	31	4		4	PDE1C	7	31926457	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	6762808	31926457	127212206	133	47792											
BBS9	27241	broad.mit.edu	37	chr7	33512166	33512166	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatgatggtagataacatgGaggttaggtagtgtttatag	14	2	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33512166	A	A	33512166	1	1	40	0	1	0	0	0	0	0	0	0	1347	1189	41	4		4	BBS9	7	33512166	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1585709	33512166	125626497	134	47793											
C7orf36	57002	broad.mit.edu	37	chr7	39606002	39606002	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccggtggcctgcgacccCgtaattgcctcggtgatgtc	12	14	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39606002	T	T	39606002	1	4	40	0	1	0	0	0	0	0	0	0	2415	667	23	4		4	C7orf36	7	39606002	5'Flank	SNP	C	TCGA-17-Z007-01A-01W-0746-08	6093836	39606002	119532661	135	47794											
OGDH	4967	broad.mit.edu	37	chr7	44747321	44747321	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcggaccaccatcagccgCgccaagcccgtctggtaagg	11	16	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44747321	T	T	44747321	2	4	40	1	0	0	0	0	0	0	0	1	10934	755	27	4		4	OGDH	7	44747321	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08	5141319	44747321	114391342	136	47795											
ABCA13	154664	broad.mit.edu	37	chr7	48450174	48450174	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgaagcgctgagtgaccGcgtggccgtcctccagcatg	14	13	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48450174	A	A	48450174	3	1	40	1	0	0	0	0	1	0	0	0	31	1087	38	4	12115	4	ABCA13	7	48450174	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3702853	48450174	110688489	137	47796											
WBSCR17	64409	broad.mit.edu	37	chr7	70638218	70638218	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactggggaccctcagggacCgtcagggtttggcagaatgg	16	10	2	1	rs144926836	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70638218	T	T	70638218	1	4	40	0	1	0	0	0	0	0	0	0	17391	667	23	4		4	WBSCR17	7	70638218	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	22188044	70638218	88500445	138	47797											
HGF	3082	broad.mit.edu	37	chr7	81372779	81372779	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattatcatcaaagcccttgTcgggatatctgcaaaccaca	6	11	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81372779	G	G	81372779	3	3	40	1	0	0	0	0	1	0	0	0	7152	1667	58	5	1491	5	HGF	7	81372779	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	10734561	81372779	77765884	139	47798											
PCLO	27445	broad.mit.edu	37	chr7	82586125	82586125	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatatccttttcatcagttgGaataagacttggaatttcac	6	7	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82586125	A	A	82586125	3	1	40	1	0	0	0	0	1	0	0	0	11677	1174	41	4	11385	4	PCLO	7	82586125	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1213346	82586125	76552538	140	47799											
CLDN12	9069	broad.mit.edu	37	chr7	90028036	90028036	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaagactagcctggccaacAtggcgaaaacccatctctac	7	14	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90028036	T	T	90028036	1	4	40	0	1	0	0	0	0	0	0	0	3505	232	8	5		5	CLDN12	7	90028036	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	7441911	90028036	69110627	141	47800											
CDK14	5218	broad.mit.edu	37	chr7	90379504	90379504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacacacacacaccaataata	0	18	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90379504	A	A	90379504	1	1	40	0	1	0	0	0	0	0	0	0	3160	493	17	3		3	CDK14	7	90379504	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	351468	90379504	68759159	142	47801											
HEPACAM2	253012	broad.mit.edu	37	chr7	92844778	92844778	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggttcctcaccaggcagctGtaattcccaatgtcttcctt	8	13	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92844778	C	C	92844778	4	2	40	1	0	0	0	0	0	1	0	0	7120	1372	48	4	769	4	HEPACAM2	7	92844778	Nonsense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2465274	92844778	66293885	143	47802											
GNGT1	2792	broad.mit.edu	37	chr7	93414782	93414782	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagaaattaaataggaaTaatgaagagaataggtaatg	9	1	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93414782	C	C	93414782	1	2	40	0	1	0	0	0	0	0	0	0	6597	1421	49	5		5	GNGT1	7	93414782	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	570004	93414782	65723881	144	47803											
PDK4	5166	broad.mit.edu	37	chr7	95222056	95222056	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtctatataccatgatcaTgatgagctaacttactgtgc	7	8	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95222056	C	C	95222056	1	2	40	0	1	0	0	0	0	0	0	0	11772	1479	51	5		5	PDK4	7	95222056	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	1807274	95222056	63916607	145	47804											
ZCWPW1	55063	broad.mit.edu	37	chr7	100006026	100006026	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccaggcttggtactttatCttttctctcaccccatgctc	5	15	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100006026	A	A	100006026	1	1	40	0	1	0	0	0	0	0	0	0	17723	928	32	3		3	ZCWPW1	7	100006026	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	4783970	100006026	59132637	146	47805											
RBM28	55131	broad.mit.edu	37	chr7	127982956	127982956	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcacctcagtccgtccttCtctggccaccctatctatat	4	17	4	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127982956	A	A	127982956	1	1	40	0	1	0	0	0	0	0	0	0	13236	928	32	3		3	RBM28	7	127982956	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	27976930	127982956	31155707	147	47806											
CHRM2	1129	broad.mit.edu	37	chr7	136623176	136623176	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctatgaaggaggcaaactTcttgttgagggtcttgatct	12	6	4	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136623176	C	C	136623176	1	2	40	0	1	0	0	0	0	0	0	0	3408	1798	62	5		5	CHRM2	7	136623176	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	8640220	136623176	22515487	148	47807											
DGKI	9162	broad.mit.edu	37	chr7	137148402	137148402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaaacattcaaagtcagCcacgtgacttcgtttccact	6	11	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137148402	A	A	137148402	1	1	40	0	1	0	0	0	0	0	0	0	4511	754	26	3		3	DGKI	7	137148402	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	525226	137148402	21990261	149	47808											
MLL3	58508	broad.mit.edu	37	chr7	152077098	152077098	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccgaggcaggcggattGcctgagctcaggaattcgag	17	9	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152077098	A	A	152077098	1	1	40	0	1	0	0	0	0	0	0	0	9715	1334	46	4		4	MLL3	7	152077098	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	14928696	152077098	7061565	150	47809											
AGPAT5	55326	broad.mit.edu	37	chr8	6599347	6599347	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtttttcttcctggaaaaGatacttttgttttacagttg	7	5	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6599347	T	T	6599347	1	4	40	0	1	0	0	0	0	0	0	0	390	957	33	3		3	AGPAT5	8	6599347	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08		6599347	139764675	151	47810											
C8orf86	389649	broad.mit.edu	37	chr8	38369846	38369846	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaataagaaggaattcctccGcgagggaggggccgggcaaa	16	8	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38369846	A	A	38369846	1	1	40	0	1	0	0	0	0	0	0	0	2468	1102	38	4		4	C8orf86	8	38369846	3'UTR	SNP	G	TCGA-17-Z007-01A-01W-0746-08	31770499	38369846	107994176	152	47811											
TACC1	6867	broad.mit.edu	37	chr8	38625643	38625643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaggaaggaaggtaggGgaagggaagggagggaggaa	23	0	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38625643	T	T	38625643	1	4	40	0	1	0	0	0	0	0	0	0	15620	1247	43	2		2	TACC1	8	38625643	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	255797	38625643	107738379	153	47812											
ZMAT4	79698	broad.mit.edu	37	chr8	40408154	40408154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacagtgagtgagtctcaCgagatctgatggttttataa	12	5	2	5			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40408154	T	T	40408154	1	4	40	0	1	0	0	0	0	0	0	0	17820	551	19	4		4	ZMAT4	8	40408154	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1782511	40408154	105955868	154	47813											
ANGPT1	284	broad.mit.edu	37	chr8	108347560	108347560	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttctatcaataccatggtCttcacctcaatattatgcat	4	10	5	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108347560	T	T	108347560	1	4	40	0	1	0	0	0	0	0	0	0	610	928	32	4		4	ANGPT1	8	108347560	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	67939406	108347560	38016462	155	47814											
PKHD1L1	93035	broad.mit.edu	37	chr8	110441625	110441625	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgacagttacaaggataaaGgaaggtggcttattcagaca	11	5	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110441625	C	C	110441625	3	2	40	1	0	0	0	0	1	0	0	0	12067	991	35	4	3159	4	PKHD1L1	8	110441625	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2094065	110441625	35922397	156	47815											
COL22A1	169044	broad.mit.edu	37	chr8	139704450	139704450	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcatgtgtgcatgtttgTggaggtgtatgtgtgcacgt	16	5	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139704450	C	C	139704450	1	2	40	0	1	0	0	0	0	0	0	0	3713	1711	59	5		5	COL22A1	8	139704450	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	29262825	139704450	6659572	157	47816											
TYRP1	7306	broad.mit.edu	37	chr9	12709190	12709190	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtggtctaacaaatgcCctactctcttatgcattagt	7	10	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12709190	T	T	12709190	1	4	40	0	1	0	0	0	0	0	0	0	16942	638	22	4		4	TYRP1	9	12709190	3'UTR	SNP	C	TCGA-17-Z007-01A-01W-0746-08		12709190	128504241	158	47817											
ELAVL2	1993	broad.mit.edu	37	chr9	23791620	23791621	+	Intron	INS	-	GC	GC													aatgaggtcacaagtatgggINSgccctaatccaataggattg					rs140811560	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	23791621	GC	GC	23791620	6	5	40	0	1	1	1	0	0	0	0	0	5092	1247	43	0		0	ELAVL2	9	23791620	Intron	INS	-	TCGA-17-Z007-01A-01W-0746-08	11082430	23791620	117421811	159	47818											
TLN1	7094	broad.mit.edu	37	chr9	35714249	35714249	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccataccttctgggcagccGtccggagttcagccagcgcg	12	15	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35714249	A	A	35714249	3	1	40	1	0	0	0	0	1	0	0	0	16070	1145	40	4	4654	4	TLN1	9	35714249	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	11922629	35714249	105499182	160	47819											
TRPM3	80036	broad.mit.edu	37	chr9	73169321	73169321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggctgctttgatgatcGgccaggaagatttgaaaagt	12	7	0	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73169321	A	A	73169321	1	1	40	0	1	0	0	0	0	0	0	0	16712	1131	39	4		4	TRPM3	9	73169321	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	37455072	73169321	68044110	161	47820											
TRPM6	140803	broad.mit.edu	37	chr9	77365452	77365452	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttcattctgctaacaagaGaaaagtattgtcatttgaca	6	6	3	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77365452	T	T	77365452	1	4	40	0	1	0	0	0	0	0	0	0	16715	957	33	3		3	TRPM6	9	77365452	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	4196131	77365452	63847979	162	47821											
PCSK5	5125	broad.mit.edu	37	chr9	78536499	78536500	+	Intron	DEL	TG	-	-													cgtttgtgtgtgtgtgtgtaTgtgtgtgtgtgtatgggaaa							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78536500	-	-	78536499	6	5	40	0	1	1	0	1	0	0	0	0	11697	1479	51	0		0	PCSK5	9	78536499	Intron	DEL	TG	TCGA-17-Z007-01A-01W-0746-08	1171047	78536499	62676932	163	47822											
GNAQ	2776	broad.mit.edu	37	chr9	80547839	80547839	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgacaaggggagggatagTttggagatggatgaagtgaa	18	2	0	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80547839	G	G	80547839	1	3	40	0	1	0	0	0	0	0	0	0	6573	1740	60	5		5	GNAQ	9	80547839	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	2011340	80547839	60665592	164	47823											
ROR2	4920	broad.mit.edu	37	chr9	94488820	94488820	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagaaaatgtaaggcatggaGacctgtttgtgctggttaat	12	4	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94488820	T	T	94488820	1	4	40	0	1	0	0	0	0	0	0	0	13638	957	33	3		3	ROR2	9	94488820	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	13940981	94488820	46724611	165	47824											
INVS	27130	broad.mit.edu	37	chr9	102879476	102879476	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttacggatggtggtggccActtccttggagcacttaaca	11	11	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102879476	C	C	102879476	1	2	40	0	1	0	0	0	0	0	0	0	7857	174	6	5		5	INVS	9	102879476	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	8390656	102879476	38333955	166	47825											
IKBKAP	8518	broad.mit.edu	37	chr9	111636890	111636890	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gacagtttagactgaaactgGaactgtggtgtgcctttatg	12	6	0	2	rs117414549	byFrequency;by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111636890	C	C	111636890	1	2	40	0	1	0	0	0	0	0	0	0	7680	1189	41	4		4	IKBKAP	9	111636890	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	8757414	111636890	29576541	167	47826											
ZNF618	114991	broad.mit.edu	37	chr9	116663358	116663358	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctcgcgctaacccgacctCctgtctcctagcaccgtcct	6	20	2	0	rs111842223		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116663358	G	G	116663358	1	3	40	0	1	0	0	0	0	0	0	0	18169	870	30	4		4	ZNF618	9	116663358	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	5026468	116663358	24550073	168	47827											
HSPA5	3309	broad.mit.edu	37	chr9	128001021	128001021	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcgagtcgagccaccaacaAgaacaatttcatcaatatca	5	11	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128001021	T	T	128001021	3	4	40	1	0	0	0	0	1	0	0	0	7483	72	3	5	894	5	HSPA5	9	128001021	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	11337663	128001021	13212410	169	47828											
BAT2L1	84726	broad.mit.edu	37	chr9	134351251	134351251	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggcccttccgacacatgCggatcccggcgacctacaga	10	15	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134351251	T	T	134351251	2	4	40	1	0	0	0	0	0	0	0	1	1325	776	27	4		4	BAT2L1	9	134351251	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08	6350230	134351251	6862180	170	47829											
CACNA1B	774	broad.mit.edu	37	chr9	140830910	140830910	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcactctgatggtagtttAttttgctgtgcagaagctct	10	7	3	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140830910	C	C	140830910	1	2	40	0	1	0	0	0	0	0	0	0	2565	464	16	5		5	CACNA1B	9	140830910	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	6479659	140830910	382521	171	47830											
DIP2C	22982	broad.mit.edu	37	chr10	387429	387429	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgaacgcaaggctgtTttgaacgcatcggacctgac	11	11	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	387429	G	G	387429	1	3	40	0	1	0	0	0	0	0	0	0	4569	1856	64	5		5	DIP2C	10	387429	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08		387429	135147318	172	47831											
CDC123	8872	broad.mit.edu	37	chr10	12252057	12252057	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaataatctgttctgtagaCtgttgtaatttaaatgatct	6	4	3	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12252057	G	G	12252057	1	3	40	0	1	0	0	0	0	0	0	0	3085	580	20	4		4	CDC123	10	12252057	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	11864628	12252057	123282690	173	47832											
FRMD4A	55691	broad.mit.edu	37	chr10	14202526	14202526	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgggagaaaatgtttgTaaactattcatctgacaagg	10	4	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14202526	C	C	14202526	1	2	40	0	1	0	0	0	0	0	0	0	6111	1653	57	5		5	FRMD4A	10	14202526	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	1950469	14202526	121332221	174	47833											
RSU1	6251	broad.mit.edu	37	chr10	16801199	16801199	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcacacttatcaaaaataAaaatttaaaaaaatccaggc	2	8	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16801199	C	C	16801199	1	2	40	0	1	0	0	0	0	0	0	0	13827	29	1	5		5	RSU1	10	16801199	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	2598673	16801199	118733548	175	47834											
PLXDC2	84898	broad.mit.edu	37	chr10	20333047	20333047	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttccttccttcctTccttcctccctccctccctc	0	24	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20333047	C	C	20333047	1	2	40	0	1	0	0	0	0	0	0	0	12213	1798	62	5		5	PLXDC2	10	20333047	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	3531848	20333047	115201700	176	47835											
LYZL1	84569	broad.mit.edu	37	chr10	29580783	29580783	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggcaggttctgtctccGgcaggctttgaggatgaagg	15	8	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29580783	A	A	29580783	3	1	40	1	0	0	0	0	1	0	0	0	9219	1116	39	4	131	4	LYZL1	10	29580783	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	9247736	29580783	105953964	177	47836											
C10orf68	79741	broad.mit.edu	37	chr10	33159249	33159249	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggtccttcacatcccttAtaagttggattcctaggtat	8	9	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33159249	G	G	33159249	1	3	40	0	1	0	0	0	0	0	0	0	1624	464	16	5		5	C10orf68	10	33159249	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	3578466	33159249	102375498	178	47837											
MAPK8	5599	broad.mit.edu	37	chr10	49618334	49618334	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgtacaactaccacccAtattaaattctaaaatattt	3	9	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49618334	C	C	49618334	1	2	40	0	1	0	0	0	0	0	0	0	9375	232	8	5		5	MAPK8	10	49618334	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	16459085	49618334	85916413	179	47838											
DDX21	9188	broad.mit.edu	37	chr10	70721802	70721802	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctattaatttgtgtaggtgAttattgatttctttctatgg	8	3	3	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70721802	C	C	70721802	1	2	40	0	1	0	0	0	0	0	0	0	4382	348	12	5		5	DDX21	10	70721802	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	21103468	70721802	64812945	180	47839											
HK1	3098	broad.mit.edu	37	chr10	71142474	71142474	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccgagatggagctggggctGaggaagcagacgcacaacaa	16	9	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71142474	T	T	71142474	2	4	40	1	0	0	0	0	0	0	0	1	7257	1277	45	3		3	HK1	10	71142474	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	420672	71142474	64392273	181	47840											
CDH23	64072	broad.mit.edu	37	chr10	73405745	73405745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacgactttgatgtaaggcCccactcactggcattttgga	9	11	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73405745	T	T	73405745	1	4	40	0	1	0	0	0	0	0	0	0	3138	638	22	4		4	CDH23	10	73405745	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	2263271	73405745	62129002	182	47841											
CDH23	64072	broad.mit.edu	37	chr10	73462464	73462464	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaccaagtgagtctctatCatctcattcctaccagccca	4	15	4	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73462464	A	A	73462464	1	1	40	0	1	0	0	0	0	0	0	0	3138	841	29	3		3	CDH23	10	73462464	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	56719	73462464	62072283	183	47842											
CCDC109A	90550	broad.mit.edu	37	chr10	74509676	74509676	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggactacaggcgtgtgcTaccatgtccagctaattttt	10	10	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74509676	C	C	74509676	1	2	40	0	1	0	0	0	0	0	0	0	2770	1537	53	5		5	CCDC109A	10	74509676	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	1047212	74509676	61025071	184	47843											
ADK	132	broad.mit.edu	37	chr10	76229552	76229552	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagtaattcccctttgccCccttcatacagccccaggca	5	17	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76229552	T	T	76229552	1	4	40	0	1	0	0	0	0	0	0	0	320	638	22	4		4	ADK	10	76229552	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1719876	76229552	59305195	185	47844											
KCNMA1	3778	broad.mit.edu	37	chr10	78729751	78729751	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcatcagcttaggcgaggTgttgggtgagttccgcatgc	14	10	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78729751	A	A	78729751	3	1	40	1	0	0	0	0	1	0	0	0	8143	1696	59	5	1561	5	KCNMA1	10	78729751	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	2500199	78729751	56804996	186	47845											
KCNMA1	3778	broad.mit.edu	37	chr10	78761171	78761171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttaaacttacaggcacGgaaactggtggagcaatcat	12	7	1	0	rs117053189	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78761171	T	T	78761171	3	4	40	1	0	0	0	0	1	0	0	0	8143	1116	39	1	1646	1	KCNMA1	10	78761171	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	31420	78761171	56773576	187	47846											
KIF20B	9585	broad.mit.edu	37	chr10	91477524	91477524	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatattaaatattacaatAtttaaactttcaactttttt	1	5	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91477524	G	G	91477524	1	3	40	0	1	0	0	0	0	0	0	0	8357	464	16	5		5	KIF20B	10	91477524	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	12716353	91477524	44057223	188	47847											
SLIT1	6585	broad.mit.edu	37	chr10	98773998	98773998	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccggttaatatcaccattCcacggagttagggtccctaa	9	11	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98773998	A	A	98773998	1	1	40	0	1	0	0	0	0	0	0	0	14853	870	30	3		3	SLIT1	10	98773998	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	7296474	98773998	36760749	189	47848											
PYROXD2	84795	broad.mit.edu	37	chr10	100152675	100152675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatccttactaataattgGggtggggtagaggggccgtt	17	5	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100152675	A	A	100152675	1	1	40	0	1	0	0	0	0	0	0	0	12975	1247	43	4		4	PYROXD2	10	100152675	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1378677	100152675	35382072	190	47849											
BTRC	8945	broad.mit.edu	37	chr10	103292248	103292248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagagtgaccacattcataGcgcagtctaaagcataaact	7	10	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103292248	A	A	103292248	1	1	40	0	1	0	0	0	0	0	0	0	1579	986	34	4		4	BTRC	10	103292248	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3139573	103292248	32242499	191	47850											
BTRC	8945	broad.mit.edu	37	chr10	103303562	103303562	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actatatgttcatttttcacCcccatcctttatgctattgt	3	11	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103303562	T	T	103303562	1	4	40	0	1	0	0	0	0	0	0	0	1579	638	22	4		4	BTRC	10	103303562	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	11314	103303562	32231185	192	47851											
SORCS3	22986	broad.mit.edu	37	chr10	106976645	106976645	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaggaagcatcagataggAgtctggctggaccaagtaaa	14	6	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106976645	C	C	106976645	1	2	40	0	1	0	0	0	0	0	0	0	15046	319	11	5		5	SORCS3	10	106976645	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	3673083	106976645	28558102	193	47852											
SORCS1	114815	broad.mit.edu	37	chr10	108430807	108430807	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccgagtcctctttcagtcTaaagaaactcttgattatcc	5	11	4	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108430807	G	G	108430807	1	3	40	0	1	0	0	0	0	0	0	0	15044	1537	53	5		5	SORCS1	10	108430807	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	1454162	108430807	27103940	194	47853											
DHX32	55760	broad.mit.edu	37	chr10	127582471	127582471	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcattaaataatgttaaccTcccactaaagttatttctac	3	9	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127582471	C	C	127582471	1	2	40	0	1	0	0	0	0	0	0	0	4545	1566	54	5		5	DHX32	10	127582471	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	19151664	127582471	7952276	195	47854											
HBG2	3048	broad.mit.edu	37	chr11	5274361	5274361	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacacatccctcaacataAaaccctttgtggctcatata	3	12	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5274361	C	C	5274361	1	2	40	0	1	0	0	0	0	0	0	0	7049	29	1	5		5	HBG2	11	5274361	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08		5274361	129732155	196	47855											
HBG2	3048	broad.mit.edu	37	chr11	5274583	5274583	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcctgcacctcaggggtgAattctttgccgaaatggatt	11	9	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5274583	C	C	5274583	1	2	40	0	1	0	0	0	0	0	0	0	7049	246	9	5		5	HBG2	11	5274583	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	222	5274583	129731933	197	47856											
PPFIBP2	8495	broad.mit.edu	37	chr11	7650658	7650658	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgagatgccagcatagcAttaatctaaatctctacttg	6	9	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7650658	G	G	7650658	1	3	40	0	1	0	0	0	0	0	0	0	12410	232	8	5		5	PPFIBP2	11	7650658	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	2376075	7650658	127355858	198	47857											
NELL1	4745	broad.mit.edu	37	chr11	20959354	20959354	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtatctatggaggaaaAgttcttgcagaaggccagcg	12	6	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20959354	T	T	20959354	3	4	40	1	0	0	0	0	1	0	0	0	10428	69	3	5	1058	5	NELL1	11	20959354	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	13308696	20959354	114047162	199	47858											
LUZP2	338645	broad.mit.edu	37	chr11	24753657	24753657	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttcatttttccacttttcTtatcagtccttaaaaaacga	2	10	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24753657	G	G	24753657	1	3	40	0	1	0	0	0	0	0	0	0	9174	1624	56	5		5	LUZP2	11	24753657	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	3794303	24753657	110252859	200	47859											
ANO3	63982	broad.mit.edu	37	chr11	26452942	26452942	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggtagtgagcaacaccCaataggtagcttttctttaa	8	9	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26452942	T	T	26452942	1	4	40	0	1	0	0	0	0	0	0	0	698	609	21	4		4	ANO3	11	26452942	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1699285	26452942	108553574	201	47860											
CHRM4	1132	broad.mit.edu	37	chr11	46408021	46408021	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaatgaagaccatttccacCgtctcatagcgattgtggga	10	10	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46408021	T	T	46408021	2	4	40	1	0	0	0	0	0	0	0	1	3410	639	23	4		4	CHRM4	11	46408021	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08	19955079	46408021	88598495	202	47861											
SLC22A9	114571	broad.mit.edu	37	chr11	63175706	63175706	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatcaggtacagaaccttaAgtatgccctgtcaggttcaa	8	9	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63175706	G	G	63175706	1	3	40	0	1	0	0	0	0	0	0	0	14575	87	3	5		5	SLC22A9	11	63175706	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	16767685	63175706	71830810	203	47862											
MRPL21	219927	broad.mit.edu	37	chr11	68660338	68660338	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccgtgcaacagggcccagCggtactttctctaacttact	8	14	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68660338	T	T	68660338	1	4	40	0	1	0	0	0	0	0	0	0	9881	783	27	4		4	MRPL21	11	68660338	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	5484632	68660338	66346178	204	47863											
NEU3	10825	broad.mit.edu	37	chr11	74716632	74716632	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgctgcccgcctttgcTtcatctacagtcaggatgct	10	12	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74716632	G	G	74716632	3	3	40	1	0	0	0	0	1	0	0	0	10438	1609	56	5	491	5	NEU3	11	74716632	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	6056294	74716632	60289884	205	47864											
GAB2	9846	broad.mit.edu	37	chr11	77937572	77937572	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtctggggatggtggcagcGacagatctgctattttcact	13	9	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77937572	A	A	77937572	2	1	40	1	0	0	0	0	0	0	0	1	6209	1045	37	4		4	GAB2	11	77937572	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3220940	77937572	57068944	206	47865											
RAB30	27314	broad.mit.edu	37	chr11	82705342	82705342	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactctgtatgtatgtcttgAgggaaagagaaaggagggag	15	3	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82705342	G	G	82705342	1	3	40	0	1	0	0	0	0	0	0	0	13027	319	11	5		5	RAB30	11	82705342	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	4767770	82705342	52301174	207	47866											
CNTN5	53942	broad.mit.edu	37	chr11	100211244	100211244	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatacagcagaaacagtcaAaactagagggaatgagtctt	10	6	2	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100211244	G	G	100211244	3	3	40	1	0	0	0	0	1	0	0	0	3676	14	1	5	2858	5	CNTN5	11	100211244	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	17505902	100211244	34795272	208	47867											
YAP1	10413	broad.mit.edu	37	chr11	102100389	102100389	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgatacagccctgatgttAgcttttcaaaaaggactttg	8	7	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102100389	C	C	102100389	1	2	40	0	1	0	0	0	0	0	0	0	17593	435	15	5		5	YAP1	11	102100389	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	1889145	102100389	32906127	209	47868											
GUCY1A2	2977	broad.mit.edu	37	chr11	106858150	106858150	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttgggaggccgaggcacGtggatcacttgaggtcagga	16	8	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106858150	A	A	106858150	1	1	40	0	1	0	0	0	0	0	0	0	6958	1160	40	4		4	GUCY1A2	11	106858150	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	4757761	106858150	28148366	210	47869											
TMEM136	219902	broad.mit.edu	37	chr11	120199551	120199551	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctaaggataacagtcatAgtgtgtgtgtgtgtgtgtgt	13	4	2	0	rs144293655	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120199551	T	T	120199551	1	4	40	0	1	0	0	0	0	0	0	0	16175	435	15	5		5	TMEM136	11	120199551	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	13341401	120199551	14806965	211	47870											
SIAE	54414	broad.mit.edu	37	chr11	124509388	124509388	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgagcaaagtctctgttGaccttcttttaacagagaga	9	8	2	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124509388	A	A	124509388	1	1	40	0	1	0	0	0	0	0	0	0	14411	1305	45	4		4	SIAE	11	124509388	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	4309837	124509388	10497128	212	47871											
PATE1	160065	broad.mit.edu	37	chr11	125616600	125616600	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaatgatgcaggtgagtagGaatagataagtggtatgaga	15	1	0	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125616600	A	A	125616600	1	1	40	0	1	0	0	0	0	0	0	0	11567	1189	41	4		4	PATE1	11	125616600	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1107212	125616600	9389916	213	47872											
OPCML	4978	broad.mit.edu	37	chr11	133328672	133328672	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatagatgcacgtgtgtgtAtatacacatagatgcacgtg	10	7	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133328672	G	G	133328672	1	3	40	0	1	0	0	0	0	0	0	0	10968	464	16	5		5	OPCML	11	133328672	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	7712072	133328672	1677844	214	47873											
ACAD8	27034	broad.mit.edu	37	chr11	134129553	134129553	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatgtggtcatgtgccgaAcaggaggaccaggccccaag	13	11	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134129553	G	G	134129553	3	3	40	1	0	0	0	0	1	0	0	0	110	43	2	5	641	5	ACAD8	11	134129553	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	800881	134129553	876963	215	47874											
AKAP3	10566	broad.mit.edu	37	chr12	4745325	4745325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcttgcgcctcgattagCcatgttcacatttgaaataa	7	10	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4745325	A	A	4745325	1	1	40	0	1	0	0	0	0	0	0	0	452	754	26	3		3	AKAP3	12	4745325	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		4745325	129106570	216	47875											
PDE3A	5139	broad.mit.edu	37	chr12	20769252	20769252	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccacaggtctacccacctTggagcctgcaccagtacgga	11	15	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20769252	A	A	20769252	4	1	40	1	0	0	0	0	0	1	0	0	11731	1821	63	5	1372	5	PDE3A	12	20769252	Nonsense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	16023927	20769252	113082643	217	47876											
ABCC9	10060	broad.mit.edu	37	chr12	22012522	22012522	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggccatattcttaccaAaaagacaatgttggtgtttt	9	6	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22012522	G	G	22012522	2	3	40	1	0	0	0	0	0	0	0	1	59	11	1	5		5	ABCC9	12	22012522	Silent	SNP	A	TCGA-17-Z007-01A-01W-0746-08	1243270	22012522	111839373	218	47877											
SOX5	6660	broad.mit.edu	37	chr12	24414420	24414420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaattcgaaaatccactcCcacctacccaccccaaagcc	3	18	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24414420	A	A	24414420	1	1	40	0	1	0	0	0	0	0	0	0	15068	638	22	2		2	SOX5	12	24414420	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	2401898	24414420	109437475	219	47878											
TMTC1	83857	broad.mit.edu	37	chr12	29785969	29785969	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaaaaatttacatagaCaaggagaggagattcaattt	7	5	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29785969	A	A	29785969	1	1	40	0	1	0	0	0	0	0	0	0	16383	493	17	3		3	TMTC1	12	29785969	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	5371549	29785969	104065926	220	47879											
C12orf40	283461	broad.mit.edu	37	chr12	40047344	40047344	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcttcttcttcttctttttCttcttcttcttcttctttct	0	12	12	0	rs71075068		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40047344	T	T	40047344	1	4	40	0	1	0	0	0	0	0	0	0	1699	928	32	4		4	C12orf40	12	40047344	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10261375	40047344	93804551	221	47880											
BIN2	51411	broad.mit.edu	37	chr12	51689556	51689556	+	Intron	DEL	A	-	-													acacacaggacaagcgaagcAaaaaagtcttggatgctgct							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51689556	-	-	51689556	6	5	40	0	1	1	0	1	0	0	0	0	1439	145	5	0		0	BIN2	12	51689556	Intron	DEL	A	TCGA-17-Z007-01A-01W-0746-08	11642212	51689556	82162339	222	47881											
SCN8A	6334	broad.mit.edu	37	chr12	52059876	52059876	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaagaaatgaagaccTaaagaagcagagtcagttat	9	4	1	6			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52059876	C	C	52059876	1	2	40	0	1	0	0	0	0	0	0	0	14037	1537	53	5		5	SCN8A	12	52059876	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	370320	52059876	81792019	223	47882											
KRT7	3855	broad.mit.edu	37	chr12	52639508	52639508	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacaagcatttcctgtatgCccctcctctgcagggcactg	8	14	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52639508	T	T	52639508	1	4	40	0	1	0	0	0	0	0	0	0	8554	754	26	4		4	KRT7	12	52639508	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	579632	52639508	81212387	224	47883											
KRT79	338785	broad.mit.edu	37	chr12	53223945	53223945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctcaggccccagggatGtcccctctccccgaatcagc	9	18	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53223945	T	T	53223945	1	4	40	0	1	0	0	0	0	0	0	0	8563	1392	48	3		3	KRT79	12	53223945	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	584437	53223945	80627950	225	47884											
PDE1B	5153	broad.mit.edu	37	chr12	54943614	54943614	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctggggctgaagctgagccGaggtgctgtctcctccttct	14	12	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54943614	T	T	54943614	1	4	40	0	1	0	0	0	0	0	0	0	11728	1073	37	3		3	PDE1B	12	54943614	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1719669	54943614	78908281	226	47885											
MON2	23041	broad.mit.edu	37	chr12	62936948	62936948	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaccgaatagaaattctGtggagacctctgactggcca	10	10	2	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62936948	A	A	62936948	2	1	40	1	0	0	0	0	0	0	0	1	9794	1364	48	4		4	MON2	12	62936948	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	7993334	62936948	70914947	227	47886											
IRAK3	11213	broad.mit.edu	37	chr12	66641740	66641740	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaaagccagagagcaagaGaaatgaggaagcttgcaaca	11	7	0	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66641740	T	T	66641740	3	4	40	1	0	0	0	0	1	0	0	0	7894	942	33	3	1626	3	IRAK3	12	66641740	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3704792	66641740	67210155	228	47887											
CNOT2	4848	broad.mit.edu	37	chr12	70721135	70721135	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggaaaaagaaagcaggggGaaaatacattagaggtgttg	15	2	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70721135	A	A	70721135	1	1	40	0	1	0	0	0	0	0	0	0	3651	1189	41	4		4	CNOT2	12	70721135	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	4079395	70721135	63130760	229	47888											
NAV3	89795	broad.mit.edu	37	chr12	78457794	78457794	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgtattttaaaaggaactCtcatagcaatgtaagaacat	6	5	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78457794	T	T	78457794	1	4	40	0	1	0	0	0	0	0	0	0	10279	928	32	4		4	NAV3	12	78457794	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	7736659	78457794	55394101	230	47889											
C12orf26	84190	broad.mit.edu	37	chr12	82792957	82792957	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccacatcaagaagaaaaTttgtgttttgaaaattcctt	6	7	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82792957	G	G	82792957	3	3	40	1	0	0	0	0	1	0	0	0	1692	1490	52	5	929	5	C12orf26	12	82792957	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	4335163	82792957	51058938	231	47890											
SLC6A15	55117	broad.mit.edu	37	chr12	85255686	85255686	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctataaggttgaagcgacGaacaatgaaaactacaggga	10	6	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85255686	A	A	85255686	3	1	40	1	0	0	0	0	1	0	0	0	14792	1058	37	4	278	4	SLC6A15	12	85255686	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2462729	85255686	48596209	232	47891											
USP44	84101	broad.mit.edu	37	chr12	95927783	95927783	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttatcattcagaacataatCatcacaaaggtaacaaaaaa	4	7	4	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95927783	A	A	95927783	3	1	40	1	0	0	0	0	1	0	0	0	17202	826	29	3	1908	3	USP44	12	95927783	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10672097	95927783	37924112	233	47892											
WSCD2	9671	broad.mit.edu	37	chr12	108634083	108634083	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcttcttgcttccccaGctcaccagtcctgttcctca	8	16	3	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108634083	A	A	108634083	1	1	40	0	1	0	0	0	0	0	0	0	17534	986	34	4		4	WSCD2	12	108634083	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	12706300	108634083	25217812	234	47893											
ANAPC7	51434	broad.mit.edu	37	chr12	110820967	110820967	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgcaaaacccaggttgGgcacagtggctcacacctgt	10	11	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110820967	A	A	110820967	1	1	40	0	1	0	0	0	0	0	0	0	606	1247	43	4		4	ANAPC7	12	110820967	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2186884	110820967	23030928	235	47894											
C12orf51	283450	broad.mit.edu	37	chr12	112686139	112686139	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttacctgcagctgtctctcCatggcattgagtttcttaaa	7	10	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112686139	T	T	112686139	3	4	40	1	0	0	0	0	1	0	0	0	1709	594	21	4	9332	4	C12orf51	12	112686139	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1865172	112686139	21165756	236	47895											
TPTE2	93492	broad.mit.edu	37	chr13	20068856	20068856	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcacctggccatgtgtaCatcttttataattcacctgt	6	10	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20068856	T	T	20068856	1	4	40	0	1	0	0	0	0	0	0	0	16555	493	17	4		4	TPTE2	13	20068856	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		20068856	95101022	237	47896											
SACS	26278	broad.mit.edu	37	chr13	23912692	23912692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggcgactgtaaatcagCaatccttctgaacacatggt	9	9	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23912692	A	A	23912692	3	1	40	1	0	0	0	0	1	0	0	0	13915	710	25	3	8420	3	SACS	13	23912692	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	3843836	23912692	91257186	238	47897											
TNFRSF19	55504	broad.mit.edu	37	chr13	24233371	24233371	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtaagttttgagctcatTacatttcttagcatttaggg	9	6	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24233371	C	C	24233371	1	2	40	0	1	0	0	0	0	0	0	0	16415	1769	61	5		5	TNFRSF19	13	24233371	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	320679	24233371	90936507	239	47898											
NUPL1	9818	broad.mit.edu	37	chr13	25894582	25894582	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgctatattttcttgtgtCttaatactctaatactctat	3	7	4	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25894582	G	G	25894582	1	3	40	0	1	0	0	0	0	0	0	0	10869	928	32	4		4	NUPL1	13	25894582	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1661211	25894582	89275296	240	47899											
ATP8A2	51761	broad.mit.edu	37	chr13	26411405	26411405	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacaaaatcacccagaatggCgaaggcttcaacacaaaggt	8	10	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26411405	G	G	26411405	2	3	40	1	0	0	0	0	0	0	0	1	1197	755	27	4		4	ATP8A2	13	26411405	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08	516823	26411405	88758473	241	47900											
FLT3	2322	broad.mit.edu	37	chr13	28578244	28578244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccaaatccatctctctgCtgaaaggtcgcctgttttgg	9	13	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28578244	A	A	28578244	3	1	40	1	0	0	0	0	1	0	0	0	6000	797	28	3	58	3	FLT3	13	28578244	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	2166839	28578244	86591634	242	47901											
NBEA	26960	broad.mit.edu	37	chr13	35672502	35672502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcaagaacagatgctggGtggaaaaggctttttagtca	12	6	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35672502	T	T	35672502	3	4	40	1	0	0	0	0	1	0	0	0	10281	1261	44	3	1682	3	NBEA	13	35672502	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	7094258	35672502	79497376	243	47902											
SPG20	23111	broad.mit.edu	37	chr13	36903442	36903442	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgatcatataaatacatgaAactggagaaaggtaccatta	7	5	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36903442	C	C	36903442	1	2	40	0	1	0	0	0	0	0	0	0	15160	29	1	5		5	SPG20	13	36903442	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	1230940	36903442	78266436	244	47903											
DACH1	1602	broad.mit.edu	37	chr13	72342436	72342436	+	Intron	DEL	C	-	-													ttggaacaagtataaggccaCaaaaagatgtcgatttctct					rs139880008		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72342436	-	-	72342436	6	5	40	0	1	1	0	1	0	0	0	0	4253	493	17	0		0	DACH1	13	72342436	Intron	DEL	C	TCGA-17-Z007-01A-01W-0746-08	35438994	72342436	42827442	245	47904											
GPC5	2262	broad.mit.edu	37	chr13	92370017	92370017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggggtttcaccatattgGccaggctggtctcgaactcc	12	11	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92370017	A	A	92370017	1	1	40	0	1	0	0	0	0	0	0	0	6666	1218	42	4		4	GPC5	13	92370017	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	20027581	92370017	22799861	246	47905											
GPC5	2262	broad.mit.edu	37	chr13	92370031	92370031	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atattggccaggctggtctcGaactcctgaccttgtgatct	10	11	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92370031	A	A	92370031	1	1	40	0	1	0	0	0	0	0	0	0	6666	1073	37	4		4	GPC5	13	92370031	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	14	92370031	22799847	247	47906											
CARKD	55739	broad.mit.edu	37	chr13	111279955	111279955	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttaggcgtgaagttggaAcagaggcatttctcttgcat	12	8	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111279955	G	G	111279955	1	3	40	0	1	0	0	0	0	0	0	0	2680	58	2	5		5	CARKD	13	111279955	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	18909924	111279955	3889923	248	47907											
CUL4A	8451	broad.mit.edu	37	chr13	113883895	113883895	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcttttcgtcccgtttGtgtcttccgcaggctaagat	10	10	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113883895	C	C	113883895	1	2	40	0	1	0	0	0	0	0	0	0	4090	1392	48	4		4	CUL4A	13	113883895	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2603940	113883895	1285983	249	47908											
RAB2B	84932	broad.mit.edu	37	chr14	21944687	21944687	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacaagtagatgcacttacCtattgtgaggtcgtggacag	12	7	0	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21944687	T	T	21944687	3	4	40	1	0	0	0	0	1	0	0	0	13026	695	24	4	560	4	RAB2B	14	21944687	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08		21944687	85404853	250	47909											
COCH	1690	broad.mit.edu	37	chr14	31354228	31354229	+	Intron	DNP	TG	AA	AA													agtagcactaccgttgactcTgaagagagacttcttagagg							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31354229	AA	AA	31354228	1	1	40	0	1	0	0	0	0	0	0	0	3688	1595	55	5		5	COCH	14	31354228	Intron	DNP	TG	TCGA-17-Z007-01A-01W-0746-08	9409541	31354228	75995312	251	47910											
SNRPN	6638	broad.mit.edu	37	chr15	25156089	25156089	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtaggctggcagaggaAagtgcagcagccaacaccca	12	12	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25156089	G	G	25156089	1	3	40	0	1	0	0	0	0	0	0	0	14984	29	1	5		5	SNRPN	15	25156089	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08		25156089	77375303	252	47911											
APBA2	321	broad.mit.edu	37	chr15	29316287	29316287	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctaatttttgtatttttAgtagagacggggtttcacca	10	5	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29316287	G	G	29316287	1	3	40	0	1	0	0	0	0	0	0	0	759	435	15	5		5	APBA2	15	29316287	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	4160198	29316287	73215105	253	47912											
RYR3	6263	broad.mit.edu	37	chr15	33767805	33767805	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacaggccatgaactgggtCcatggccccaggggttgggg	16	11	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33767805	A	A	33767805	1	1	40	0	1	0	0	0	0	0	0	0	13881	870	30	3		3	RYR3	15	33767805	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	4451518	33767805	68763587	254	47913											
RYR3	6263	broad.mit.edu	37	chr15	33789327	33789327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccttttgtggagaatacGcgttaattccccagattcct	7	11	1	2	rs150841045	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33789327	A	A	33789327	1	1	40	0	1	0	0	0	0	0	0	0	13881	1102	38	4		4	RYR3	15	33789327	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	21522	33789327	68742065	255	47914											
ELL3	80237	broad.mit.edu	37	chr15	44067855	44067855	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttccctggagtactgggAtaccttggacttcaggcttt	12	9	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44067855	G	G	44067855	1	3	40	0	1	0	0	0	0	0	0	0	5106	348	12	5		5	ELL3	15	44067855	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	10278528	44067855	58463537	256	47915											
PAQR5	54852	broad.mit.edu	37	chr15	69615238	69615238	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaagagatgtctcatccaGtgcaaataacgagcacaaag	9	8	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69615238	C	C	69615238	1	2	40	0	1	0	0	0	0	0	0	0	11532	1044	36	4		4	PAQR5	15	69615238	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	25547383	69615238	32916154	257	47916											
MYO9A	4649	broad.mit.edu	37	chr15	72141239	72141239	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccttattctcagcaaattCcaagctactgatatctttga	5	10	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72141239	G	G	72141239	3	3	40	1	0	0	0	0	1	0	0	0	10178	864	30	4	878	4	MYO9A	15	72141239	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	2526001	72141239	30390153	258	47917											
A2BP1	54715	broad.mit.edu	37	chr16	7391115	7391115	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgatggagatactcacccCtatttatgtttttcccccgt	6	11	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7391115	G	G	7391115	1	3	40	0	1	0	0	0	0	0	0	0	3	696	24	4		4	A2BP1	16	7391115	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		7391115	82963638	259	47918											
XYLT1	64131	broad.mit.edu	37	chr16	17431405	17431405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctccttgggtgcaggaCttcacgttgctaaatccagg	11	11	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17431405	A	A	17431405	1	1	40	0	1	0	0	0	0	0	0	0	17590	580	20	3		3	XYLT1	16	17431405	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10040290	17431405	72923348	260	47919											
HS3ST4	9951	broad.mit.edu	37	chr16	26005309	26005309	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	21	0	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26005309	C	C	26005309	1	2	40	0	1	0	0	0	0	0	0	0	7434	1392	48	4		4	HS3ST4	16	26005309	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	8573904	26005309	64349444	261	47920											
CNGB1	1258	broad.mit.edu	37	chr16	57973721	57973721	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgggtcctaacagctggacGtgtcacctgtgatgagggac	14	10	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57973721	A	A	57973721	1	1	40	0	1	0	0	0	0	0	0	0	3632	1160	40	4		4	CNGB1	16	57973721	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	31968412	57973721	32381032	262	47921											
CCDC113	29070	broad.mit.edu	37	chr16	58312296	58312296	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatttttggaactctattGgaactatggggagagatggc	12	4	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58312296	A	A	58312296	1	1	40	0	1	0	0	0	0	0	0	0	2776	1363	47	4		4	CCDC113	16	58312296	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	338575	58312296	32042457	263	47922											
CDH13	1012	broad.mit.edu	37	chr16	82940446	82940446	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgccaacctctgcttccaTtgtctcatgacctcctcttc	4	17	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82940446	G	G	82940446	1	3	40	0	1	0	0	0	0	0	0	0	3129	1508	52	5		5	CDH13	16	82940446	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	24628150	82940446	7414307	264	47923											
NLRP1	22861	broad.mit.edu	37	chr17	5407155	5407155	+	Intron	DEL	A	-	-													gcctggagccagaatccaccAaaaaaaaaccctgaatggac					rs112591758		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5407155	-	-	5407155	6	5	40	0	1	1	0	1	0	0	0	0	10566	145	5	0		0	NLRP1	17	5407155	Intron	DEL	A	TCGA-17-Z007-01A-01W-0746-08		5407155	75788055	265	47924											
NLRP1	22861	broad.mit.edu	37	chr17	5481274	5481274	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccctcagaaataatacCacacatctacaaccatctga	4	13	3	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5481274	T	T	5481274	1	4	40	0	1	0	0	0	0	0	0	0	10566	609	21	4		4	NLRP1	17	5481274	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	74119	5481274	75713936	266	47925											
TP53	7157	broad.mit.edu	37	chr17	7577536	7577536	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgatggtgaggatgggccTccggttcatgccgcccatgc	15	11	1	2	rs67185453		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7577536	C	C	7577536	3	2	40	1	0	0	0	0	1	0	0	0	16505	1550	54	5	545	5	TP53	17	7577536	Missense_Mutation	SNP	T	TCGA-17-Z007-01A-01W-0746-08	2096262	7577536	73617674	267	47926											
GLP2R	9340	broad.mit.edu	37	chr17	9739737	9739737	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacgtgtgttggcctcattcTtctcctggaaatgtctctgt	9	10	4	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9739737	G	G	9739737	2	3	40	1	0	0	0	0	0	0	0	1	6517	1596	56	5		5	GLP2R	17	9739737	Silent	SNP	T	TCGA-17-Z007-01A-01W-0746-08	2162201	9739737	71455473	268	47927											
MYH4	4622	broad.mit.edu	37	chr17	10358095	10358095	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcacattcatgaaagcaCggatgttgtactgaatgcag	10	8	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10358095	T	T	10358095	3	4	40	1	0	0	0	0	1	0	0	0	10131	536	19	4	3427	4	MYH4	17	10358095	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08	618358	10358095	70837115	269	47928											
MYH2	4620	broad.mit.edu	37	chr17	10432234	10432234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctggaactcagcctcccGcttcttgttcatctcaatct	5	14	6	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10432234	A	A	10432234	3	1	40	1	0	0	0	0	1	0	0	0	10129	1086	38	4	2364	4	MYH2	17	10432234	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	74139	10432234	70762976	270	47929											
ACCN1	40	broad.mit.edu	37	chr17	32410083	32410083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagttttagggtacatgtgCacaatgtgcaggttagttac	11	5	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32410083	A	A	32410083	1	1	40	0	1	0	0	0	0	0	0	0	128	725	25	3		3	ACCN1	17	32410083	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	21977849	32410083	48785127	271	47930											
KRT34	3885	broad.mit.edu	37	chr17	39537907	39537907	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctttctcctctcttccagGcaatagtaggtccctagggc	10	13	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39537907	C	C	39537907	1	2	40	0	1	0	0	0	0	0	0	0	8542	1218	42	4		4	KRT34	17	39537907	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	7127824	39537907	41657303	272	47931											
ATP6V0A1	535	broad.mit.edu	37	chr17	40629591	40629591	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattttctgaacctgtctcCtggttcctcgttgcctgcat	7	12	2	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40629591	T	T	40629591	1	4	40	0	1	0	0	0	0	0	0	0	1172	696	24	4		4	ATP6V0A1	17	40629591	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	1091684	40629591	40565619	273	47932											
FAM134C	162427	broad.mit.edu	37	chr17	40761280	40761280	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcctgacacatctcggcgGcccctgaaagtcgaccccga	11	16	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40761280	A	A	40761280	2	1	40	1	0	0	0	0	0	0	0	1	5493	1190	42	4		4	FAM134C	17	40761280	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	131689	40761280	40433930	274	47933											
LRRC37A2	474170	broad.mit.edu	37	chr17	44594667	44594667	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagattgcaatgattcttTtacttatcgtgttcattgtt	6	6	2	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44594667	A	A	44594667	1	1	40	0	1	0	0	0	0	0	0	0	9079	1856	64	5		5	LRRC37A2	17	44594667	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	3833387	44594667	36600543	275	47934											
C17orf57	124989	broad.mit.edu	37	chr17	45451930	45451930	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatataagaagaaaaatAgtttgtcttccaaactccct	4	7	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45451930	T	T	45451930	3	4	40	1	0	0	0	0	1	0	0	0	1881	420	15	5	1004	5	C17orf57	17	45451930	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	857263	45451930	35743280	276	47935											
ANKFN1	162282	broad.mit.edu	37	chr17	54424093	54424094	+	Intron	INS	-	T	T													ccattcccattgacgtactaINSttttttttttaattttgaat					rs139099753	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54424094	T	T	54424093	6	5	40	0	1	1	1	0	0	0	0	0	625	464	16	0		0	ANKFN1	17	54424093	Intron	INS	-	TCGA-17-Z007-01A-01W-0746-08	8972163	54424093	26771117	277	47936											
C17orf64	124773	broad.mit.edu	37	chr17	58504037	58504037	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgctggagggaggaagcGctgtgctccacctccccagc	13	13	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58504037	A	A	58504037	1	1	40	0	1	0	0	0	0	0	0	0	1888	1102	38	4		4	C17orf64	17	58504037	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	4079944	58504037	22691173	278	47937											
NACA2	342538	broad.mit.edu	37	chr17	59667970	59667970	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcggactgcctttgctctcGacacatttgcttgtgacatg	9	12	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59667970	A	A	59667970	3	1	40	1	0	0	0	0	1	0	0	0	10228	1059	37	4	79	4	NACA2	17	59667970	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1163933	59667970	21527240	279	47938											
L3MBTL4	91133	broad.mit.edu	37	chr18	6244411	6244411	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcataataaatatcaaacaaAtttgttattttctagaaaat	2	4	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6244411	G	G	6244411	1	3	40	0	1	0	0	0	0	0	0	0	8666	116	4	5		5	L3MBTL4	18	6244411	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08		6244411	71832837	280	47939											
PTPRS	5802	broad.mit.edu	37	chr19	5273447	5273447	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcccgccctgaggagccCaatacctcggaggacagtaa	11	15	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5273447	T	T	5273447	1	4	40	0	1	0	0	0	0	0	0	0	12919	609	21	4		4	PTPRS	19	5273447	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		5273447	53855536	281	47940											
RFX2	5990	broad.mit.edu	37	chr19	6073413	6073413	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaagtgctgatgtgcaaCaaatctccctgtgctgagat	11	9	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6073413	G	G	6073413	1	3	40	0	1	0	0	0	0	0	0	0	13371	493	17	4		4	RFX2	19	6073413	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	799966	6073413	53055570	282	47941											
CCDC105	126402	broad.mit.edu	37	chr19	15132685	15132685	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccctggttcgcatgtaccAgagacacgtgggcacccaac	10	15	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15132685	G	G	15132685	3	3	40	1	0	0	0	0	1	0	0	0	2766	188	7	5	1227	5	CCDC105	19	15132685	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	9059272	15132685	43996298	283	47942											
ZNF540	163255	broad.mit.edu	37	chr19	38089366	38089366	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatggcccatgtaagtcaCagtttctctttcctttttag	6	11	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38089366	T	T	38089366	1	4	40	0	1	0	0	0	0	0	0	0	18102	493	17	4		4	ZNF540	19	38089366	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	22956681	38089366	21039617	284	47943											
KCNK6	9424	broad.mit.edu	37	chr19	38817875	38817875	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgcagaccttccgccaCgtgtccgacctccacggcct	10	18	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38817875	T	T	38817875	2	4	40	1	0	0	0	0	0	0	0	1	8140	535	19	4		4	KCNK6	19	38817875	Silent	SNP	C	TCGA-17-Z007-01A-01W-0746-08	728509	38817875	20311108	285	47944											
PSG1	5669	broad.mit.edu	37	chr19	43348788	43348788	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagcaaagagaataaagccAcaggtgatgtcatccgaggg	14	7	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43348788	T	T	43348788	1	4	40	0	1	0	0	0	0	0	0	0	12759	174	6	5		5	PSG1	19	43348788	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	4530913	43348788	15780195	286	47945											
ZNF845	91664	broad.mit.edu	37	chr19	53856410	53856410	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaggcaattcatagtggaGagaaaccttacaagtgtaat	9	5	1	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53856410	T	T	53856410	4	4	40	1	0	0	0	0	0	1	0	0	18320	943	33	3	2492	3	ZNF845	19	53856410	Nonsense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	10507622	53856410	5272573	287	47946											
LILRB1	10859	broad.mit.edu	37	chr19	55142481	55142481	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctctatcctgccagcaccGagggctcatccatccacaga	7	17	2	1	rs114930141	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55142481	A	A	55142481	1	1	40	0	1	0	0	0	0	0	0	0	8862	1073	37	4		4	LILRB1	19	55142481	5'UTR	SNP	G	TCGA-17-Z007-01A-01W-0746-08	1286071	55142481	3986502	288	47947											
NLRP4	147945	broad.mit.edu	37	chr19	56364178	56364179	+	Intron	DEL	TT	-	-													tgtaggcaggaaatggtctcTtagacgtggtggttacatgt					rs35935257		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56364179	-	-	56364178	6	5	40	0	1	1	0	1	0	0	0	0	10574	1624	56	0		0	NLRP4	19	56364178	Intron	DEL	TT	TCGA-17-Z007-01A-01W-0746-08	1221697	56364178	2764805	289	47948											
PTPRA	5786	broad.mit.edu	37	chr20	2848695	2848695	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatagctaggggctgaaatCatgtgaaagcttgctaactc	11	7	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2848695	T	T	2848695	1	4	40	0	1	0	0	0	0	0	0	0	12903	841	29	4		4	PTPRA	20	2848695	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		2848695	60176825	290	47949											
PAK7	57144	broad.mit.edu	37	chr20	9560716	9560716	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtactttacaatccaatcGtataaaaaggtcgtgccagc	7	9	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9560716	C	C	9560716	1	2	40	0	1	0	0	0	0	0	0	0	11499	1160	40	4		4	PAK7	20	9560716	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	6712021	9560716	53464804	291	47950											
SLC24A3	57419	broad.mit.edu	37	chr20	19604560	19604560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggtggccagccacatcCctgagactcaggaagaagag	12	11	1	3			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19604560	A	A	19604560	1	1	40	0	1	0	0	0	0	0	0	0	14581	638	22	2		2	SLC24A3	20	19604560	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10043844	19604560	43420960	292	47951											
MOCS3	27304	broad.mit.edu	37	chr20	49575564	49575564	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccgagatgagattctgcGctatagccggcagctagtgc	13	11	1	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49575564	A	A	49575564	3	1	40	1	0	0	0	0	1	0	0	0	9786	1087	38	4	187	4	MOCS3	20	49575564	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	29971004	49575564	13449956	293	47952											
ZNF831	128611	broad.mit.edu	37	chr20	57828286	57828286	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgttcagtgtggcagaaCttgctcggatcaccttatga	10	9	3	2			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57828286	G	G	57828286	1	3	40	0	1	0	0	0	0	0	0	0	18314	580	20	4		4	ZNF831	20	57828286	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	8252722	57828286	5197234	294	47953											
DSCAM	1826	broad.mit.edu	37	chr21	41710046	41710046	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctttcacggtcacgtggaCgctctggctggtggagagtt	14	10	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41710046	T	T	41710046	3	4	40	1	0	0	0	0	1	0	0	0	4808	536	19	4	4377	4	DSCAM	21	41710046	Missense_Mutation	SNP	C	TCGA-17-Z007-01A-01W-0746-08		41710046	6419849	295	47954											
C21orf29	54084	broad.mit.edu	37	chr21	45941910	45941910	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactcccagtcgtaggcgccGgaggtggcgatggtctggtt	16	10	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45941910	A	A	45941910	2	1	40	1	0	0	0	0	0	0	0	1	2146	1103	39	4		4	C21orf29	21	45941910	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	4231864	45941910	2187985	296	47955											
BCL2L13	23786	broad.mit.edu	37	chr22	18189500	18189500	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgagtcatccttgctccCtccctcctcattctcttttc	3	19	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18189500	T	T	18189500	1	4	40	0	1	0	0	0	0	0	0	0	1376	696	24	4		4	BCL2L13	22	18189500	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08		18189500	33115066	297	47956											
BPIL2	254240	broad.mit.edu	37	chr22	32819568	32819568	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagttgtagggtgtgggtgTgtgtgtgtgtgtgtgtgtgt	22	0	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32819568	G	G	32819568	1	3	40	0	1	0	0	0	0	0	0	0	1501	1711	59	5		5	BPIL2	22	32819568	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	14630068	32819568	18484998	298	47957											
PNPLA5	150379	broad.mit.edu	37	chr22	44282341	44282341	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggttccttagacaccagcGtccatagcactggttccttg	11	12	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44282341	A	A	44282341	3	1	40	1	0	0	0	0	1	0	0	0	12263	1145	40	4	514	4	PNPLA5	22	44282341	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	11462773	44282341	7022225	299	47958											
FAM48B2	170067	broad.mit.edu	37	chrX	24332234	24332234	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgccgtctgcgcgtctgcGcgcgtgcgcacttgccgcac	14	18	2	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24332234	A	A	24332234	1	1	40	0	1	0	0	0	0	0	0	0	5625	1102	38	4		4	FAM48B2	23	24332234	5'Flank	SNP	G	TCGA-17-Z007-01A-01W-0746-08		24332234	130938326	300	47959											
DMD	1756	broad.mit.edu	37	chrX	32509548	32509548	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgatactccagccagttaAgtctctcacttagcaactgg	7	12	3	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32509548	C	C	32509548	3	2	40	1	0	0	0	0	1	0	0	0	4620	72	3	5	9072	5	DMD	23	32509548	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	8177314	32509548	122761012	301	47960											
CACNA1F	778	broad.mit.edu	37	chrX	49090431	49090432	+	5'Flank	INS	-	GTG	GTG													taggcccccaagctgggcccINSgtgactccaaggtgatctcg							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTG	49090432	GTG	GTG	49090431	6	5	40	0	1	1	1	0	0	0	0	0	2569	667	23	0		0	CACNA1F	23	49090431	5'Flank	INS	-	TCGA-17-Z007-01A-01W-0746-08	16580883	49090431	106180129	302	47961											
IL1RAPL2	26280	broad.mit.edu	37	chrX	103899611	103899611	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggtattttattctctttgTagcaattttgaatgggagtc	9	4	1	1	rs144184271	by1000genomes	TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103899611	A	A	103899611	1	1	40	0	1	0	0	0	0	0	0	0	7732	1653	57	5		5	IL1RAPL2	23	103899611	Intron	SNP	T	TCGA-17-Z007-01A-01W-0746-08	54809180	103899611	51370949	303	47962											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104973880	104973880	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggaaagaaggaaggaAggaaggaaggaaggaaggaa	19	0	0	1			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104973880	G	G	104973880	1	3	40	0	1	0	0	0	0	0	0	0	7732	87	3	5		5	IL1RAPL2	23	104973880	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	1074269	104973880	50296680	304	47963											
MID2	11043	broad.mit.edu	37	chrX	107088753	107088753	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacAcactctctctctctctctct	0	20	4	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107088753	T	T	107088753	1	4	40	0	1	0	0	0	0	0	0	0	9671	174	6	5		5	MID2	23	107088753	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	2114873	107088753	48181807	305	47964											
COL4A5	1287	broad.mit.edu	37	chrX	107886556	107886556	+	Intron	SNP	C	A	A													ggaaaacttccccagccttgCtagagacctagacatccaaa							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107886556	A	A	107886556	1	1	40	0	1	0	0	0	0	0	0	0	3726	812	28	3		3	COL4A5	23	107886556	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	797803	107886556	47384004	306	47965	238	2									
COL4A5	1287	broad.mit.edu	37	chrX	107886563	107886563	+	Intron	SNP	C	A	A													ttccccagccttgctagagaCctagacatccaaatacaaga							TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107886563	A	A	107886563	1	1	40	0	1	0	0	0	0	0	0	0	3726	522	18	3		3	COL4A5	23	107886563	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	7	107886563	47383997	307	47966	238	2									
ACSL4	2182	broad.mit.edu	37	chrX	108890893	108890893	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctagcagaaggcaagaaatAactaagatcagagcaaaact	9	7	1	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108890893	T	T	108890893	1	4	40	0	1	0	0	0	0	0	0	0	179	377	13	5		5	ACSL4	23	108890893	Intron	SNP	A	TCGA-17-Z007-01A-01W-0746-08	1004330	108890893	46379667	308	47967											
AGTR2	186	broad.mit.edu	37	chrX	115304268	115304268	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaagacgaatagctatggGaagaacaggataacccgtga	12	7	0	4			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115304268	T	T	115304268	2	4	40	1	0	0	0	0	0	0	0	1	402	1161	41	3		3	AGTR2	23	115304268	Silent	SNP	G	TCGA-17-Z007-01A-01W-0746-08	6413375	115304268	39966292	309	47968											
GLUD2	2747	broad.mit.edu	37	chrX	120181912	120181912	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccttccccatccggcgcgAcgacggctcctgggaggtca	12	17	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120181912	G	G	120181912	3	3	40	1	0	0	0	0	1	0	0	0	6541	275	10	5	376	5	GLUD2	23	120181912	Missense_Mutation	SNP	A	TCGA-17-Z007-01A-01W-0746-08	4877644	120181912	35088648	310	47969											
GRIA3	2892	broad.mit.edu	37	chrX	122598990	122598990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaataatataacaatatccGtgttgttatagtattccacc	6	7	0	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122598990	A	A	122598990	1	1	40	0	1	0	0	0	0	0	0	0	6835	1160	40	4		4	GRIA3	23	122598990	Intron	SNP	G	TCGA-17-Z007-01A-01W-0746-08	2417078	122598990	32671570	311	47970											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686548	125686548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcggcgtccgcctcgaccGcgggcgctttccgtttcctg	12	17	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125686548	A	A	125686548	3	1	40	1	0	0	0	0	1	0	0	0	4297	1087	38	4	1351	4	DCAF12L1	23	125686548	Missense_Mutation	SNP	G	TCGA-17-Z007-01A-01W-0746-08	3087558	125686548	29584012	312	47971											
ARHGEF6	9459	broad.mit.edu	37	chrX	135827684	135827684	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttttggtggccaacttcCtgttcttaaccttactggcc	7	13	1	0			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135827684	T	T	135827684	1	4	40	0	1	0	0	0	0	0	0	0	912	696	24	4		4	ARHGEF6	23	135827684	Intron	SNP	C	TCGA-17-Z007-01A-01W-0746-08	10141136	135827684	19442876	313	47972											
SPSB1	80176	broad.mit.edu	37	chr1	9390617	9390617	+	Intron	DEL	G	-	-													acagtaacatcctgccagctGgaccttgtgatctggacaca					rs34817952		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9390617	-	-	9390617	6	5	41	0	1	1	0	1	0	0	0	0	15230	1363	47	0		0	SPSB1	1	9390617	Intron	DEL	G	TCGA-17-Z008-01A-01W-0746-08		9390617	239860004	1	47973											
MTOR	2475	broad.mit.edu	37	chr1	11307989	11307989	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttggtgagagctgtaccCcagcagccccaccaaggcat	11	15	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11307989	T	T	11307989	3	4	41	1	0	0	0	0	1	0	0	0	10048	623	22	4	6854	4	MTOR	1	11307989	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1917372	11307989	237942632	2	47974											
C1orf158	93190	broad.mit.edu	37	chr1	12815354	12815354	+	Intron	DEL	A	-	-													cagagtgagactccatgtccAaaaaaaaaaaaggaggaggc					rs34558133		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12815354	-	-	12815354	6	5	41	0	1	1	0	1	0	0	0	0	2027	145	5	0		0	C1orf158	1	12815354	Intron	DEL	A	TCGA-17-Z008-01A-01W-0746-08	1507365	12815354	236435267	3	47975											
KAZ	23254	broad.mit.edu	37	chr1	15099022	15099022	+	Intron	DEL	A	-	-													aatacgtttaatagattgagAaaaaaaaaaaaaagagaccc					rs35991159		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15099022	-	-	15099022	6	5	41	0	1	1	0	1	0	0	0	0	8058	261	9	0		0	KAZ	1	15099022	Intron	DEL	A	TCGA-17-Z008-01A-01W-0746-08	2283668	15099022	234151599	4	47976											
EIF4G3	8672	broad.mit.edu	37	chr1	21205910	21205910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaataactcctttcagcCgctcctctgtgtcaacagta	7	13	4	0	rs142520007		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21205910	A	A	21205910	3	1	41	1	0	0	0	0	1	0	0	0	5080	652	23	1	2469	1	EIF4G3	1	21205910	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6106888	21205910	228044711	5	47977											
AHDC1	27245	broad.mit.edu	37	chr1	27874050	27874050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagggccacggggtgggCcagggggccgggccatttcc	19	13	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27874050	T	T	27874050	3	4	41	1	0	0	0	0	1	0	0	0	412	739	26	4	238	4	AHDC1	1	27874050	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6668140	27874050	221376571	6	47978											
YTHDF2	51441	broad.mit.edu	37	chr1	29070254	29070254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtggtcccaggacaaatGgaagggtcgttttgatgtca	14	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29070254	T	T	29070254	3	4	41	1	0	0	0	0	1	0	0	0	17626	1357	47	2	1486	2	YTHDF2	1	29070254	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1196204	29070254	220180367	7	47979											
BAI2	576	broad.mit.edu	37	chr1	32202983	32202983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgctctccaccctcaccCctccaccccactcacacccc	2	27	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32202983	A	A	32202983	1	1	41	0	1	0	0	0	0	0	0	0	1304	638	22	2		2	BAI2	1	32202983	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3132729	32202983	217047638	8	47980											
RNF19B	127544	broad.mit.edu	37	chr1	33415229	33415229	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttggtccgaactcgtaaaGtctgggccctctgttgacgg	13	10	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33415229	C	C	33415229	3	2	41	1	0	0	0	0	1	0	0	0	13582	1029	36	4	1474	4	RNF19B	1	33415229	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1212246	33415229	215835392	9	47981											
CSMD2	114784	broad.mit.edu	37	chr1	33985175	33985175	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcgctggccatgatgtcTgtgggctggatgttgcggtc	16	10	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33985175	A	A	33985175	2	1	41	1	0	0	0	0	0	0	0	1	3979	1567	55	5		5	CSMD2	1	33985175	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	569946	33985175	215265446	10	47982											
DLGAP3	58512	broad.mit.edu	37	chr1	35365117	35365117	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagactcccagcctgagtcaGctccaggagtcctaaggcag	12	13	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35365117	A	A	35365117	1	1	41	0	1	0	0	0	0	0	0	0	4601	986	34	4		4	DLGAP3	1	35365117	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1379942	35365117	213885504	11	47983											
THRAP3	9967	broad.mit.edu	37	chr1	36748273	36748273	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcggtcccgaagccgatctCtctctcgttcaaggaagcgc	10	15	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36748273	G	G	36748273	3	3	41	1	0	0	0	0	1	0	0	0	15997	913	32	4	111	4	THRAP3	1	36748273	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1383156	36748273	212502348	12	47984											
THRAP3	9967	broad.mit.edu	37	chr1	36752695	36752695	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagatgggctcaactctgccGagtggtgccgggtatcagtc	14	11	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36752695	C	C	36752695	2	2	41	1	0	0	0	0	0	0	0	1	15997	1045	37	4		4	THRAP3	1	36752695	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4422	36752695	212497926	13	47985											
INPP5B	3633	broad.mit.edu	37	chr1	38341323	38341323	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaatgttggcattttccatCttatccagggagcgaacaat	10	8	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38341323	T	T	38341323	2	4	41	1	0	0	0	0	0	0	0	1	7825	912	32	4		4	INPP5B	1	38341323	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1588628	38341323	210909298	14	47986											
PABPC4	8761	broad.mit.edu	37	chr1	40027512	40027512	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagagctactccacccctCcccagtgcccagacctagtg	9	17	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40027512	A	A	40027512	1	1	41	0	1	0	0	0	0	0	0	0	11460	870	30	3		3	PABPC4	1	40027512	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1686189	40027512	209223109	15	47987											
MFSD2A	84879	broad.mit.edu	37	chr1	40425357	40425358	+	Intron	INS	-	T	T													acagagttgtggtggattaaINStttttttttttgacgttctt					rs149518371		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40425358	T	T	40425357	6	5	41	0	1	1	1	0	0	0	0	0	9623	116	4	0		0	MFSD2A	1	40425357	Intron	INS	-	TCGA-17-Z008-01A-01W-0746-08	397845	40425357	208825264	16	47988											
SCP2	6342	broad.mit.edu	37	chr1	53446052	53446052	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgccctttatttatatAtggttttggttttaggttgg	11	3	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53446052	G	G	53446052	1	3	41	0	1	0	0	0	0	0	0	0	14047	464	16	5		5	SCP2	1	53446052	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	13020695	53446052	195804569	17	47989											
LRP8	7804	broad.mit.edu	37	chr1	53736899	53736900	+	Missense_Mutation	DNP	CG	AA	AA													ggtgtgggagaaggtctcacCgccacaggtcttctggtcca					rs146486060		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	53736900	AA	AA	53736899	3	1	41	1	0	0	0	0	1	0	0	0	9050	666	23	1	1817	1	LRP8	1	53736899	Missense_Mutation	DNP	CG	TCGA-17-Z008-01A-01W-0746-08	290847	53736899	195513722	18	47990											
ACOT11	26027	broad.mit.edu	37	chr1	55059696	55059696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggccaccttcgtggcccGccgagagatcaccaaggtaa	11	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55059696	T	T	55059696	3	4	41	1	0	0	0	0	1	0	0	0	149	1087	38	3	473	3	ACOT11	1	55059696	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1322797	55059696	194190925	19	47991											
C8B	732	broad.mit.edu	37	chr1	57417664	57417664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggccggaccatggacCctgctaactgggtgctcagc	13	13	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57417664	A	A	57417664	1	1	41	0	1	0	0	0	0	0	0	0	2442	638	22	2		2	C8B	1	57417664	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2357968	57417664	191832957	20	47992											
DNAJC6	9829	broad.mit.edu	37	chr1	65871552	65871552	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatctctttttttctttaGgtagttcttcctttgccagc	5	9	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65871552	T	T	65871552	5	4	41	1	0	0	0	0	0	0	1	0	4693	1014	35	2	2118	2	DNAJC6	1	65871552	Splice_Site	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8453888	65871552	183379069	21	47993											
C1orf173	127254	broad.mit.edu	37	chr1	75037193	75037193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctaccaccaccttccCtgcagctgctgtttttccta	4	17	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037193	A	A	75037193	3	1	41	1	0	0	0	0	1	0	0	0	2034	681	24	2	395	2	C1orf173	1	75037193	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	9165641	75037193	174213428	22	47994											
GBP4	115361	broad.mit.edu	37	chr1	89658674	89658674	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccagggtaaaatcccgaaCagtccaaataaagtctggaa	8	10	1	0	rs150777601		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89658674	G	G	89658674	3	3	41	1	0	0	0	0	1	0	0	0	6338	478	17	4	1367	4	GBP4	1	89658674	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	14621481	89658674	159591947	23	47995											
VAV3	10451	broad.mit.edu	37	chr1	108412390	108412390	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagcagtatacactaaacCcaatttgcagtcttttatcc	5	12	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108412390	T	T	108412390	1	4	41	0	1	0	0	0	0	0	0	0	17260	638	22	4		4	VAV3	1	108412390	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	18753716	108412390	140838231	24	47996											
MYBPHL	343263	broad.mit.edu	37	chr1	109839045	109839045	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgagatcccagccctcgtCgactctttatccttagtatt	6	13	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109839045	T	T	109839045	1	4	41	0	1	0	0	0	0	0	0	0	10109	899	31	4		4	MYBPHL	1	109839045	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1426655	109839045	139411576	25	47997											
TSPAN2	10100	broad.mit.edu	37	chr1	115593215	115593215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcagtgactttgaaacgGgtactgataggtaaaaagtt	10	5	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115593215	T	T	115593215	1	4	41	0	1	0	0	0	0	0	0	0	16769	1247	43	2		2	TSPAN2	1	115593215	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5754170	115593215	133657406	26	47998											
HAO2	51179	broad.mit.edu	37	chr1	119927521	119927521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatgtgcatccagacctgCagctgaacaaacagttgatc	8	11	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119927521	A	A	119927521	3	1	41	1	0	0	0	0	1	0	0	0	7018	711	25	3	416	3	HAO2	1	119927521	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4334306	119927521	129323100	27	47999											
PHGDH	26227	broad.mit.edu	37	chr1	120279825	120279825	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccaaggaggctcagagccGctgtggggaggaaattgctg	16	9	1	1	rs147049991		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120279825	A	A	120279825	3	1	41	1	0	0	0	0	1	0	0	0	11936	1087	38	4	911	4	PHGDH	1	120279825	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	352304	120279825	128970796	28	48000											
ADAM30	11085	broad.mit.edu	37	chr1	120437439	120437439	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtccaaaaatgctttgGcactgcatatatctggatct	8	9	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120437439	A	A	120437439	2	1	41	1	0	0	0	0	0	0	0	1	248	1195	42	4		4	ADAM30	1	120437439	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	157614	120437439	128813182	29	48001											
NBPF9	400818	broad.mit.edu	37	chr1	144168520	144168520	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacagtaccttggcttggctCttgacgtggatggtgagtac	13	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144168520	G	G	144168520	1	3	41	0	1	0	0	0	0	0	0	0	10294	928	32	4		4	NBPF9	1	144168520	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	23731081	144168520	105082101	30	48002											
NBPF9	400818	broad.mit.edu	37	chr1	144193505	144193505	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttcatcagtgtgtcaccCggccaactcgctgagcttac	8	16	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144193505	T	T	144193505	1	4	41	0	1	0	0	0	0	0	0	0	10294	667	23	4		4	NBPF9	1	144193505	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	24985	144193505	105057116	31	48003											
PDE4DIP	9659	broad.mit.edu	37	chr1	144979865	144979865	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaaagcatttgacaaaatCcagcatccccttatgattaa	5	9	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144979865	A	A	144979865	1	1	41	0	1	0	0	0	0	0	0	0	11737	870	30	3		3	PDE4DIP	1	144979865	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	786360	144979865	104270756	32	48004											
PDE4DIP	9659	broad.mit.edu	37	chr1	145019127	145019127	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccagcctggccaacatggCgaaaccccatctctaccaaa	7	16	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145019127	T	T	145019127	1	4	41	0	1	0	0	0	0	0	0	0	11737	783	27	4		4	PDE4DIP	1	145019127	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	39262	145019127	104231494	33	48005											
NBPF10	100132406	broad.mit.edu	37	chr1	145239554	145239554	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catattcactttctttgaccActaagcagcacacaaatata	3	11	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145239554	C	C	145239554	1	2	41	0	1	0	0	0	0	0	0	0	10287	174	6	5		5	NBPF10	1	145239554	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	220427	145239554	104011067	34	48006											
TXNIP	10628	broad.mit.edu	37	chr1	145440739	145440739	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcatggccagccgaacCagctctgagatgagttgggt	13	11	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145440739	T	T	145440739	2	4	41	1	0	0	0	0	0	0	0	1	16929	581	21	4		4	TXNIP	1	145440739	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	201185	145440739	103809882	35	48007											
NBPF10	100132406	broad.mit.edu	37	chr1	146419833	146419833	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtctTtctctttcatccttttctac	9	8	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146419833	C	C	146419833	1	2	41	0	1	0	0	0	0	0	0	0	10287	1856	64	5		5	NBPF10	1	146419833	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	979094	146419833	102830788	36	48008											
GJA8	2703	broad.mit.edu	37	chr1	147380507	147380507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggcactaagaagttccGgctggaggggaccctgctga	14	10	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147380507	T	T	147380507	3	4	41	1	0	0	0	0	1	0	0	0	6469	1116	39	1	427	1	GJA8	1	147380507	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	960674	147380507	101870114	37	48009											
VPS45	11311	broad.mit.edu	37	chr1	150049082	150049082	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtatggaaggaaaggtttaAtttatcagtcgagagttaat	12	2	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150049082	G	G	150049082	1	3	41	0	1	0	0	0	0	0	0	0	17338	116	4	5		5	VPS45	1	150049082	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2668575	150049082	99201539	38	48010											
CTSK	1513	broad.mit.edu	37	chr1	150778513	150778513	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaagacaaagaagaaagagGccaggcatcagcagggaact	12	8	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150778513	A	A	150778513	1	1	41	0	1	0	0	0	0	0	0	0	4071	1218	42	4		4	CTSK	1	150778513	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	729431	150778513	98472108	39	48011											
LASS2	29956	broad.mit.edu	37	chr1	150941018	150941018	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatatgagtaaggtatctaGcttgctgggaagggaaaggg	17	3	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150941018	A	A	150941018	1	1	41	0	1	0	0	0	0	0	0	0	8711	986	34	4		4	LASS2	1	150941018	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	162505	150941018	98309603	40	48012											
BNIPL	149428	broad.mit.edu	37	chr1	151015950	151015950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctacagggcagtgttagGgagggaaaagtaaaaaagaa	16	3	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151015950	T	T	151015950	1	4	41	0	1	0	0	0	0	0	0	0	1486	1247	43	2		2	BNIPL	1	151015950	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	74932	151015950	98234671	41	48013											
TMOD4	29765	broad.mit.edu	37	chr1	151145935	151145935	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatggctagaatccacctgCccctgatcctctcaccctca	5	18	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151145935	T	T	151145935	1	4	41	0	1	0	0	0	0	0	0	0	16359	754	26	4		4	TMOD4	1	151145935	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	129985	151145935	98104686	42	48014											
KPRP	448834	broad.mit.edu	37	chr1	152731989	152731990	+	Intron	DNP	CC	AA	AA													tcttcctctaggtcctggcaCcccctctccaactctcaccc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152731990	AA	AA	152731989	1	1	41	0	1	0	0	0	0	0	0	0	8507	522	18	3		3	KPRP	1	152731989	Intron	DNP	CC	TCGA-17-Z008-01A-01W-0746-08	1586054	152731989	96518632	43	48015											
UBAP2L	9898	broad.mit.edu	37	chr1	154241156	154241156	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgctttctgagggtcaggGagcttgagctcaggaaaaat	14	7	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154241156	A	A	154241156	1	1	41	0	1	0	0	0	0	0	0	0	16964	1189	41	4		4	UBAP2L	1	154241156	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1509167	154241156	95009465	44	48016											
NTRK1	4914	broad.mit.edu	37	chr1	156834171	156834171	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgagaaccagcagcatctgCagcatctggagctccgtgat	11	12	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156834171	T	T	156834171	4	4	41	1	0	0	0	0	0	1	0	0	10801	711	25	4	374	4	NTRK1	1	156834171	Nonsense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2593015	156834171	92416450	45	48017											
ARHGEF11	9826	broad.mit.edu	37	chr1	156921330	156921330	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgcccatgacccactcttCgagcagctggcgagtcccat	9	17	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156921330	T	T	156921330	1	4	41	0	1	0	0	0	0	0	0	0	898	899	31	4		4	ARHGEF11	1	156921330	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	87159	156921330	92329291	46	48018											
FCRL1	115350	broad.mit.edu	37	chr1	157773808	157773808	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagcagaactggaacTgggcatctgaactctgtaga	11	7	2	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157773808	C	C	157773808	3	2	41	1	0	0	0	0	1	0	0	0	5851	1580	55	5	1245	5	FCRL1	1	157773808	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	852478	157773808	91476813	47	48019											
CD5L	922	broad.mit.edu	37	chr1	157805856	157805856	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcccagccgtcatcacAcacggtgccccactggcctt	8	17	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157805856	T	T	157805856	3	4	41	1	0	0	0	0	1	0	0	0	3057	159	6	5	914	5	CD5L	1	157805856	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	32048	157805856	91444765	48	48020											
CD1A	909	broad.mit.edu	37	chr1	158224560	158224561	+	Intron	DEL	TC	-	-													agttgggtggtgggtgaaggTctctctctctctctctgtgt							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158224561	-	-	158224560	6	5	41	0	1	1	0	1	0	0	0	0	3004	1682	58	0		0	CD1A	1	158224560	Intron	DEL	TC	TCGA-17-Z008-01A-01W-0746-08	418704	158224560	91026061	49	48021											
CD1C	911	broad.mit.edu	37	chr1	158261218	158261218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcatctaaattatgggaGttctttagaatgttctattt	6	5	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158261218	A	A	158261218	1	1	41	0	1	0	0	0	0	0	0	0	3006	1044	36	4		4	CD1C	1	158261218	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	36658	158261218	90989403	50	48022											
SPTA1	6708	broad.mit.edu	37	chr1	158585251	158585251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggttaccagctcaaaaccTagaggtggaagaggagataa	12	7	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158585251	A	A	158585251	1	1	41	0	1	0	0	0	0	0	0	0	15234	1537	53	5		5	SPTA1	1	158585251	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	324033	158585251	90665370	51	48023											
SPTA1	6708	broad.mit.edu	37	chr1	158615234	158615234	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattggaaattttaaaattAgtagaggtttcaggtcaagt	9	4	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158615234	G	G	158615234	1	3	41	0	1	0	0	0	0	0	0	0	15234	435	15	5		5	SPTA1	1	158615234	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	29983	158615234	90635387	52	48024											
PYHIN1	149628	broad.mit.edu	37	chr1	158913621	158913621	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaatctatgaaattcaggaTaaaacaggaagtatggctgt	9	5	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158913621	A	A	158913621	3	1	41	1	0	0	0	0	1	0	0	0	12973	1403	49	5	1062	5	PYHIN1	1	158913621	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	298387	158913621	90337000	53	48025											
IFI16	3428	broad.mit.edu	37	chr1	159023556	159023556	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catttttccaagtggcgaatCattttgtttatactttaaga	6	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159023556	A	A	159023556	1	1	41	0	1	0	0	0	0	0	0	0	7581	841	29	3		3	IFI16	1	159023556	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	109935	159023556	90227065	54	48026											
C1orf110	339512	broad.mit.edu	37	chr1	162824962	162824962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccttgctggggtctacgtCcttagatggattcacagaat	11	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162824962	A	A	162824962	3	1	41	1	0	0	0	0	1	0	0	0	2003	855	30	3	410	3	C1orf110	1	162824962	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3801406	162824962	86425659	55	48027											
GPA33	10223	broad.mit.edu	37	chr1	167059522	167059522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggccacatcttccccacCatggtcttgcttcttctctg	6	16	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167059522	A	A	167059522	3	1	41	1	0	0	0	0	1	0	0	0	6651	594	21	2	984	2	GPA33	1	167059522	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4234560	167059522	82191099	56	48028											
F5	2153	broad.mit.edu	37	chr1	169487795	169487795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttccatacccaggggtgtgGaacatcctatcaaaagaaaa	8	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169487795	T	T	169487795	3	4	41	1	0	0	0	0	1	0	0	0	5391	1174	41	3	486	3	F5	1	169487795	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2428273	169487795	79762826	57	48029											
FMO4	2329	broad.mit.edu	37	chr1	171308423	171308423	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatccaagaactgaaaacaTtatttaaagtttctctcgag	5	7	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171308423	A	A	171308423	1	1	41	0	1	0	0	0	0	0	0	0	6015	1508	52	5		5	FMO4	1	171308423	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1820628	171308423	77942198	58	48030											
TNN	63923	broad.mit.edu	37	chr1	175091726	175091726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgccacccagaagcagtGtaaagttgagaatggcaagt	11	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175091726	T	T	175091726	1	4	41	0	1	0	0	0	0	0	0	0	16446	1392	48	3		3	TNN	1	175091726	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3783303	175091726	74158895	59	48031											
TNN	63923	broad.mit.edu	37	chr1	175092665	175092665	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctgacggagagaccaGggaggttccggtggggaagg	19	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175092665	C	C	175092665	3	2	41	1	0	0	0	0	1	0	0	0	16446	1000	35	4	2822	4	TNN	1	175092665	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	939	175092665	74157956	60	48032											
TNR	7143	broad.mit.edu	37	chr1	175375319	175375319	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcagccctctccttcccctCctgagaccacgctgcgagct	7	20	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175375319	A	A	175375319	1	1	41	0	1	0	0	0	0	0	0	0	16461	870	30	3		3	TNR	1	175375319	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	282654	175375319	73875302	61	48033											
TNR	7143	broad.mit.edu	37	chr1	175630269	175630269	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttcctgagctcctgccctCcaccagacatctggtagaag	8	14	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175630269	T	T	175630269	1	4	41	0	1	0	0	0	0	0	0	0	16461	870	30	4		4	TNR	1	175630269	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	254950	175630269	73620352	62	48034											
C1orf49	84066	broad.mit.edu	37	chr1	178491003	178491003	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgtgtggaggttgattAtttttggttctatatcagtg	13	2	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178491003	G	G	178491003	1	3	41	0	1	0	0	0	0	0	0	0	2063	464	16	5		5	C1orf49	1	178491003	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2860734	178491003	70759618	63	48035											
TDRD5	163589	broad.mit.edu	37	chr1	179609087	179609087	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggataagtggtggtatcgggTcattatccatcgagtccttg	13	7	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179609087	A	A	179609087	3	1	41	1	0	0	0	0	1	0	0	0	15855	1667	58	5	1668	5	TDRD5	1	179609087	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1118084	179609087	69641534	64	48036											
CACNA1E	777	broad.mit.edu	37	chr1	181728030	181728030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgaatccttcccagcaCtgggcttgtctctttctgtt	8	12	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181728030	A	A	181728030	1	1	41	0	1	0	0	0	0	0	0	0	2568	580	20	3		3	CACNA1E	1	181728030	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2118943	181728030	67522591	65	48037											
C1orf21	81563	broad.mit.edu	37	chr1	184404564	184404564	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctcactgcaacctccGcctcccaagtgcaagcaatt	6	17	2	0	rs150625478	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184404564	A	A	184404564	1	1	41	0	1	0	0	0	0	0	0	0	2049	1102	38	4		4	C1orf21	1	184404564	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2676534	184404564	64846057	66	48038											
HMCN1	83872	broad.mit.edu	37	chr1	186045751	186045751	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgataaagtattgattttgCcaggtaaagattgataccaa	9	4	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186045751	T	T	186045751	3	4	41	1	0	0	0	0	1	0	0	0	7287	739	26	4	8696	4	HMCN1	1	186045751	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1641187	186045751	63204870	67	48039											
HMCN1	83872	broad.mit.edu	37	chr1	186072648	186072648	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaacatgaagagatatcaGtaattgttaataacccactt	6	6	1	3	rs140493567	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186072648	A	A	186072648	3	1	41	1	0	0	0	0	1	0	0	0	7287	1029	36	4	10892	4	HMCN1	1	186072648	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	26897	186072648	63177973	68	48040											
KCNT2	343450	broad.mit.edu	37	chr1	196397241	196397241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagccaaatgtacctggagCctaggatgagcatagaattc	10	8	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196397241	A	A	196397241	3	1	41	1	0	0	0	0	1	0	0	0	8162	738	26	3	2505	3	KCNT2	1	196397241	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	10324593	196397241	52853380	69	48041											
CRB1	23418	broad.mit.edu	37	chr1	197390775	197390775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagtgatcaatcaatatGtgcttttcagaactcctttt	6	7	3	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197390775	A	A	197390775	3	1	41	1	0	0	0	0	1	0	0	0	3880	1377	48	4	1839	4	CRB1	1	197390775	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	993534	197390775	51859846	70	48042											
PTPRC	5788	broad.mit.edu	37	chr1	198677229	198677229	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatacacattatgaaataCtaatcaagtttatttctgta	5	5	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198677229	G	G	198677229	1	3	41	0	1	0	0	0	0	0	0	0	12905	580	20	4		4	PTPRC	1	198677229	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1286454	198677229	50573392	71	48043											
PKP1	5317	broad.mit.edu	37	chr1	201285876	201285876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgcggagggcctgggtGtgtcagcctgactccgcttt	16	12	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201285876	T	T	201285876	1	4	41	0	1	0	0	0	0	0	0	0	12079	1392	48	3		3	PKP1	1	201285876	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2608647	201285876	47964745	72	48044											
SLC26A9	115019	broad.mit.edu	37	chr1	205909565	205909566	+	Intron	INS	-	A	A													gcagagatgggctcaggcagINSagacagtgcccgagtggatg					rs138178577	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205909566	A	A	205909565	6	5	41	0	1	1	1	0	0	0	0	0	14638	957	33	0		0	SLC26A9	1	205909565	Intron	INS	-	TCGA-17-Z008-01A-01W-0746-08	4623689	205909565	43341056	73	48045											
CR2	1380	broad.mit.edu	37	chr1	207639899	207639899	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtggctctcctccgcctatCctaaatggccggattagtta	9	12	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207639899	A	A	207639899	2	1	41	1	0	0	0	0	0	0	0	1	3874	845	30	3		3	CR2	1	207639899	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1730334	207639899	41610722	74	48046											
CAMK1G	57172	broad.mit.edu	37	chr1	209773565	209773565	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcacccaaaggcattgctCactttgattgagttgatggg	11	9	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209773565	A	A	209773565	1	1	41	0	1	0	0	0	0	0	0	0	2624	841	29	3		3	CAMK1G	1	209773565	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2133666	209773565	39477056	75	48047											
CAMK1G	57172	broad.mit.edu	37	chr1	209785514	209785514	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgggagcaaaggaaagtcCtcctactgctctgagcccac	10	12	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209785514	T	T	209785514	2	4	41	1	0	0	0	0	0	0	0	1	2624	668	24	4		4	CAMK1G	1	209785514	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	11949	209785514	39465107	76	48048											
KCNH1	3756	broad.mit.edu	37	chr1	211256134	211256134	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccttacctctgccaggcgGgagtgcttgtggacattctc	12	13	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211256134	A	A	211256134	2	1	41	1	0	0	0	0	0	0	0	1	8101	1219	43	4		4	KCNH1	1	211256134	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1470620	211256134	37994487	77	48049											
KCTD3	51133	broad.mit.edu	37	chr1	215751283	215751283	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaactagagaaaataaaaAtggagtactgtttttctgtt	8	3	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215751283	T	T	215751283	1	4	41	0	1	0	0	0	0	0	0	0	8180	116	4	5		5	KCTD3	1	215751283	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	4495149	215751283	33499338	78	48050											
OBSCN	84033	broad.mit.edu	37	chr1	228407094	228407094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaggtgggggccagcgCcacgctgagctgtgaggtgg	21	9	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228407094	T	T	228407094	1	4	41	0	1	0	0	0	0	0	0	0	10907	754	26	4		4	OBSCN	1	228407094	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	12655811	228407094	20843527	79	48051											
PCNXL2	80003	broad.mit.edu	37	chr1	233150374	233150374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatgtgaaagtgggtgcCtgtacctaagagattctaac	10	7	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233150374	A	A	233150374	1	1	41	0	1	0	0	0	0	0	0	0	11686	696	24	2		2	PCNXL2	1	233150374	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4743280	233150374	16100247	80	48052											
RYR2	6262	broad.mit.edu	37	chr1	237753238	237753238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacaaacagggatattacCatgtggctgagcaagaggct	11	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237753238	A	A	237753238	2	1	41	1	0	0	0	0	0	0	0	1	13880	581	21	2		2	RYR2	1	237753238	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4602864	237753238	11497383	81	48053											
RYR2	6262	broad.mit.edu	37	chr1	237961378	237961378	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctacggccgagacagaatCagtgaattacttggcatgga	11	8	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237961378	T	T	237961378	2	4	41	1	0	0	0	0	0	0	0	1	13880	816	29	4		4	RYR2	1	237961378	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	208140	237961378	11289243	82	48054											
RGS7	6000	broad.mit.edu	37	chr1	241469867	241469867	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccttacacacatacacataTgtccacacacgtacaaaccc	2	17	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241469867	A	A	241469867	1	1	41	0	1	0	0	0	0	0	0	0	13419	1479	51	5		5	RGS7	1	241469867	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	3508489	241469867	7780754	83	48055											
KMO	8564	broad.mit.edu	37	chr1	241712220	241712220	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacgtccatggtgaaaaaagCaggatgaacgctgggcacgg	14	8	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241712220	G	G	241712220	1	3	41	0	1	0	0	0	0	0	0	0	8495	725	25	4		4	KMO	1	241712220	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	242353	241712220	7538401	84	48056											
AKT3	10000	broad.mit.edu	37	chr1	243809167	243809167	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttccagacaaatgaatgctGtgctgggaataagttattat	9	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243809167	C	C	243809167	1	2	41	0	1	0	0	0	0	0	0	0	481	1392	48	4		4	AKT3	1	243809167	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2096947	243809167	5441454	85	48057											
HNRNPU	3192	broad.mit.edu	37	chr1	245025891	245025891	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgatcaacgaacgaataaggGatgagtaaaactaggtgagc	12	6	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245025891	A	A	245025891	1	1	41	0	1	0	0	0	0	0	0	0	7340	1189	41	4		4	HNRNPU	1	245025891	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1216724	245025891	4224730	86	48058											
AHCTF1	25909	broad.mit.edu	37	chr1	247068793	247068793	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggacaacagagcgagactcTgtctccaaaaaaacaaaaca	7	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247068793	A	A	247068793	1	1	41	0	1	0	0	0	0	0	0	0	408	1595	55	5		5	AHCTF1	1	247068793	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2042902	247068793	2181828	87	48059											
OR1C1	26188	broad.mit.edu	37	chr1	247920989	247920989	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgacaggtggcagctgcaGgtggaaacagctctctgctt	13	10	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247920989	T	T	247920989	2	4	41	1	0	0	0	0	0	0	0	1	11046	987	35	2		2	OR1C1	1	247920989	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	852196	247920989	1329632	88	48060											
ODC1	4953	broad.mit.edu	37	chr2	10584122	10584122	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtttcaactactttctactAaagtatagaaatataataat	4	5	2	1	rs28362399	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10584122	G	G	10584122	1	3	41	0	1	0	0	0	0	0	0	0	10920	377	13	5		5	ODC1	2	10584122	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08		10584122	232615251	89	48061											
APOB	338	broad.mit.edu	37	chr2	21239701	21239701	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgtctctactaaaaatacAaaaaattagccgggcgcgtt	7	11	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21239701	C	C	21239701	1	2	41	0	1	0	0	0	0	0	0	0	787	145	5	5		5	APOB	2	21239701	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	10655579	21239701	221959672	90	48062											
DNMT3A	1788	broad.mit.edu	37	chr2	25456948	25456948	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagaataacattgaaaaatCaggagatgatgtccaaccct	8	7	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25456948	A	A	25456948	1	1	41	0	1	0	0	0	0	0	0	0	4716	841	29	3		3	DNMT3A	2	25456948	3'UTR	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4217247	25456948	217742425	91	48063											
DNAJC5G	285126	broad.mit.edu	37	chr2	27502927	27502927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacttgacaccagcgccaCctggtgatgctaatgagtaa	10	10	0	4	rs142003915	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27502927	A	A	27502927	1	1	41	0	1	0	0	0	0	0	0	0	4692	522	18	3		3	DNAJC5G	2	27502927	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2045979	27502927	215696446	92	48064											
FOSL2	2355	broad.mit.edu	37	chr2	28635045	28635045	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgtcctcgtcggcgggGctggacaaggcccagcgctc	14	17	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28635045	A	A	28635045	2	1	41	1	0	0	0	0	0	0	0	1	6046	1190	42	4		4	FOSL2	2	28635045	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1132118	28635045	214564328	93	48065											
XDH	7498	broad.mit.edu	37	chr2	31572756	31572756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagactgtgggggcagggCacaacctaaagttaagcttc	13	8	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31572756	A	A	31572756	1	1	41	0	1	0	0	0	0	0	0	0	17553	725	25	3		3	XDH	2	31572756	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2937711	31572756	211626617	94	48066											
SLC3A1	6519	broad.mit.edu	37	chr2	44507912	44507912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaaaactgtttggattaCttcattttataaatcgtccc	4	7	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44507912	A	A	44507912	3	1	41	1	0	0	0	0	1	0	0	0	14740	565	20	3	494	3	SLC3A1	2	44507912	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	12935156	44507912	198691461	95	48067											
NRXN1	9378	broad.mit.edu	37	chr2	50657472	50657473	+	Intron	INS	-	A	A													aatgactcctgggcaggtagINSaaaaaaacagcaagccaatt					rs140388834	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50657473	A	A	50657472	6	5	41	0	1	1	1	0	0	0	0	0	10760	957	33	0		0	NRXN1	2	50657472	Intron	INS	-	TCGA-17-Z008-01A-01W-0746-08	6149560	50657472	192541901	96	48068											
SNRNP27	11017	broad.mit.edu	37	chr2	70124411	70124411	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgtgtgttctctgctAgtgaggtggaatgactatta	12	4	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70124411	T	T	70124411	1	4	41	0	1	0	0	0	0	0	0	0	14968	435	15	5		5	SNRNP27	2	70124411	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	19466939	70124411	173074962	97	48069											
LOXL3	84695	broad.mit.edu	37	chr2	74762634	74762634	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggatccagcatcttgggcCaagggactcattcctcagcc	10	14	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74762634	T	T	74762634	1	4	41	0	1	0	0	0	0	0	0	0	8988	609	21	4		4	LOXL3	2	74762634	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4638223	74762634	168436739	98	48070											
USP39	10713	broad.mit.edu	37	chr2	85848669	85848670	+	Frame_Shift_Ins	INS	-	A	A													cctctcacacatcaatgcttINSatgcctgtctggtgtgtggc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85848670	A	A	85848669	7	5	41	1	0	1	1	0	0	0	0	0	17197	1754	61	0	410	0	USP39	2	85848669	Frame_Shift_Ins	INS	-	TCGA-17-Z008-01A-01W-0746-08	11086035	85848669	157350704	99	48071											
NCAPH	23397	broad.mit.edu	37	chr2	97009061	97009062	+	Intron	DNP	GG	TT	TT													tggtaggtgggtagggatctGgatttaagtggctcttttta							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	97009062	TT	TT	97009061	1	4	41	0	1	0	0	0	0	0	0	0	10304	1363	47	2		2	NCAPH	2	97009061	Intron	DNP	GG	TCGA-17-Z008-01A-01W-0746-08	11160392	97009061	146190312	100	48072											
PDCL3	79031	broad.mit.edu	37	chr2	101186012	101186012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacacgtgtttgtgacgtAagatgtttctctccttgttt	9	7	1	2	rs74933860	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101186012	G	G	101186012	1	3	41	0	1	0	0	0	0	0	0	0	11722	377	13	5		5	PDCL3	2	101186012	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	4176951	101186012	142013361	101	48073											
POU3F3	5455	broad.mit.edu	37	chr2	105472929	105472929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggacacgccgacgtcggacGacctggagcagttcgccaag	14	13	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105472929	T	T	105472929	3	4	41	1	0	0	0	0	1	0	0	0	12372	1058	37	3	963	3	POU3F3	2	105472929	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4286917	105472929	137726444	102	48074											
GCC2	9648	broad.mit.edu	37	chr2	109085455	109085455	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcattaactgaacgtctggAtgctcttcttctggaaaaag	10	8	4	1	rs142334581	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109085455	G	G	109085455	3	3	41	1	0	0	0	0	1	0	0	0	6348	333	12	5	254	5	GCC2	2	109085455	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	3612526	109085455	134113918	103	48075											
MARCO	8685	broad.mit.edu	37	chr2	119700033	119700033	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagtctttctgctagcgagAtacgaaaatagacaagtcaa	9	7	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119700033	T	T	119700033	1	4	41	0	1	0	0	0	0	0	0	0	9403	348	12	5		5	MARCO	2	119700033	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	10614578	119700033	123499340	104	48076											
UGGT1	56886	broad.mit.edu	37	chr2	128870689	128870689	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgttcaaaggagatcacAgatatccctcgtctaatcct	6	10	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128870689	T	T	128870689	4	4	41	1	0	0	0	0	0	1	0	0	17067	180	7	5	575	5	UGGT1	2	128870689	Nonsense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	9170656	128870689	114328684	105	48077											
UGGT1	56886	broad.mit.edu	37	chr2	128947302	128947302	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccttaggtcctcagaaaCgtgaagaattatgatctctg	8	8	2	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128947302	T	T	128947302	3	4	41	1	0	0	0	0	1	0	0	0	17067	536	19	4	4816	4	UGGT1	2	128947302	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	76613	128947302	114252071	106	48078											
LRP1B	53353	broad.mit.edu	37	chr2	141250324	141250324	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcttttcccctttgcataAtttcagtttagtttagcagc	6	9	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141250324	G	G	141250324	1	3	41	0	1	0	0	0	0	0	0	0	9042	116	4	5		5	LRP1B	2	141250324	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	12303022	141250324	101949049	107	48079											
LRP1B	53353	broad.mit.edu	37	chr2	141816380	141816380	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcactcacttcaacaccaTacaaaagcacaaggactata	3	13	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141816380	C	C	141816380	1	2	41	0	1	0	0	0	0	0	0	0	9042	1421	49	5		5	LRP1B	2	141816380	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	566056	141816380	101382993	108	48080											
MBD5	55777	broad.mit.edu	37	chr2	149247917	149247917	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatccattacaatggagaCtttaatgccaaaagcgttaa	6	8	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149247917	T	T	149247917	2	4	41	1	0	0	0	0	0	0	0	1	9440	564	20	4		4	MBD5	2	149247917	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7431537	149247917	93951456	109	48081											
EPC2	26122	broad.mit.edu	37	chr2	149542538	149542538	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggacagagtgccaaaggtTactcccagcagtgccatcag	11	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149542538	G	G	149542538	2	3	41	1	0	0	0	0	0	0	0	1	5203	1741	61	5		5	EPC2	2	149542538	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	294621	149542538	93656835	110	48082											
GALNT13	114805	broad.mit.edu	37	chr2	154997023	154997023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaagattagaagggtaaGtttgcatttgttatataatc	9	2	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154997023	T	T	154997023	1	4	41	0	1	0	0	0	0	0	0	0	6273	1044	36	3		3	GALNT13	2	154997023	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5454485	154997023	88202350	111	48083											
CYTIP	9595	broad.mit.edu	37	chr2	158283863	158283863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcattaaattaaattacCtttaaaacctgcagctttgc	4	9	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158283863	A	A	158283863	3	1	41	1	0	0	0	0	1	0	0	0	4240	695	24	2	545	2	CYTIP	2	158283863	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3286840	158283863	84915510	112	48084											
ACVR1C	130399	broad.mit.edu	37	chr2	158443660	158443660	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttatagtttcccaagagTaaaattaaattcggaatgaa	6	5	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158443660	A	A	158443660	1	1	41	0	1	0	0	0	0	0	0	0	222	1653	57	5		5	ACVR1C	2	158443660	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	159797	158443660	84755713	113	48085											
MARCH7	64844	broad.mit.edu	37	chr2	160604494	160604494	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttttcttcaagagaatcAgaatcttcccgaagcaatac	5	9	4	2	rs144441888	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160604494	G	G	160604494	2	3	41	1	0	0	0	0	0	0	0	1	9398	175	7	5		5	MARCH7	2	160604494	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2160834	160604494	82594879	114	48086											
FAP	2191	broad.mit.edu	37	chr2	163030363	163030363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttcattaaccaacaagaCcttctagtttaataactgtt	3	9	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163030363	A	A	163030363	1	1	41	0	1	0	0	0	0	0	0	0	5730	522	18	3		3	FAP	2	163030363	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2425869	163030363	80169010	115	48087											
FIGN	55137	broad.mit.edu	37	chr2	164469893	164469893	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatctgtggcatcaaccccCttctgaattactacagtcta	6	13	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164469893	T	T	164469893	1	4	41	0	1	0	0	0	0	0	0	0	5948	696	24	4		4	FIGN	2	164469893	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1439530	164469893	78729480	116	48088											
SCN2A	6326	broad.mit.edu	37	chr2	166142436	166142436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacaatgaattgatttgcCagcagaacgaggggcaaaat	12	6	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166142436	A	A	166142436	1	1	41	0	1	0	0	0	0	0	0	0	14029	609	21	2		2	SCN2A	2	166142436	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1672543	166142436	77056937	117	48089											
G6PC2	57818	broad.mit.edu	37	chr2	169763321	169763321	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacttacctttagctgtgtcCtttgaaagctttagtttcat	6	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169763321	G	G	169763321	1	3	41	0	1	0	0	0	0	0	0	0	6204	696	24	4		4	G6PC2	2	169763321	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3620885	169763321	73436052	118	48090											
LRP2	4036	broad.mit.edu	37	chr2	170060849	170060849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagttttcaactggcagccCaatgcatgcgcctcatcatt	7	12	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170060849	A	A	170060849	1	1	41	0	1	0	0	0	0	0	0	0	9043	609	21	2		2	LRP2	2	170060849	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	297528	170060849	73138524	119	48091											
HOXD12	3238	broad.mit.edu	37	chr2	176964979	176964979	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgtgccacgccgggctccacGaccctgctccagggggctcc	13	19	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176964979	C	C	176964979	2	2	41	1	0	0	0	0	0	0	0	1	7388	1045	37	4		4	HOXD12	2	176964979	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	6904130	176964979	66234394	120	48092											
TTN	7273	broad.mit.edu	37	chr2	179406246	179406246	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcctctggtgggtaccAagtaagtgtcatgccatcac	10	11	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179406246	T	T	179406246	3	4	41	1	0	0	0	0	1	0	0	0	16861	130	5	5	10473	5	TTN	2	179406246	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2441267	179406246	63793127	121	48093											
TTN	7273	broad.mit.edu	37	chr2	179474723	179474723	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagggggttctgaagaacAagaaaaaaatgttagtatca	10	4	3	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179474723	T	T	179474723	1	4	41	0	1	0	0	0	0	0	0	0	16861	145	5	5		5	TTN	2	179474723	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	68477	179474723	63724650	122	48094											
TTN	7273	broad.mit.edu	37	chr2	179481203	179481203	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcagtgctgctcaaaactCactttagtccatgttttccg	7	11	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179481203	G	G	179481203	1	3	41	0	1	0	0	0	0	0	0	0	16861	841	29	4		4	TTN	2	179481203	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6480	179481203	63718170	123	48095											
TTN	7273	broad.mit.edu	37	chr2	179490092	179490092	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacatccctcagagtaagtGtatgaacttttccttctgaa	6	9	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179490092	C	C	179490092	3	2	41	1	0	0	0	0	1	0	0	0	16861	1377	48	4	63725	4	TTN	2	179490092	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8889	179490092	63709281	124	48096											
TTN	7273	broad.mit.edu	37	chr2	179543627	179543627	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agattttaaggctggcaatgTaaggccttaactgaagcagc	11	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179543627	A	A	179543627	1	1	41	0	1	0	0	0	0	0	0	0	16861	1653	57	5		5	TTN	2	179543627	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	53535	179543627	63655746	125	48097											
TTN	7273	broad.mit.edu	37	chr2	179659294	179659294	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacctagattagaaatgaCcaagtagattacttttttaa	5	6	1	4	rs72647847		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179659294	T	T	179659294	1	4	41	0	1	0	0	0	0	0	0	0	16861	522	18	4		4	TTN	2	179659294	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	115667	179659294	63540079	126	48098											
SSFA2	6744	broad.mit.edu	37	chr2	182781062	182781062	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacatgccacctacccttacCgagtgtgctctgtgaatcct	8	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182781062	G	G	182781062	3	3	41	1	0	0	0	0	1	0	0	0	15301	644	23	4	2737	4	SSFA2	2	182781062	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3121768	182781062	60418311	127	48099											
MYO1B	4430	broad.mit.edu	37	chr2	192173215	192173215	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcaataaacatttgagtgTtgtgtgcccaggatcccatt	8	9	1	1	rs114878057	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192173215	C	C	192173215	1	2	41	0	1	0	0	0	0	0	0	0	10163	1740	60	5		5	MYO1B	2	192173215	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	9392153	192173215	51026158	128	48100											
DNAH7	56171	broad.mit.edu	37	chr2	196892810	196892810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactattcaaaagtagataaGgggcagttagaacataaaac	8	5	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196892810	T	T	196892810	1	4	41	0	1	0	0	0	0	0	0	0	4646	1015	35	2		2	DNAH7	2	196892810	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4719595	196892810	46306563	129	48101											
CRYGB	1419	broad.mit.edu	37	chr2	209010586	209010586	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccacgccgcaggaagtacTggtggccctggtagttgggg	16	12	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209010586	A	A	209010586	3	1	41	1	0	0	0	0	1	0	0	0	3947	1580	55	5	371	5	CRYGB	2	209010586	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	12117776	209010586	34188787	130	48102											
SP140	11262	broad.mit.edu	37	chr2	231174515	231174515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtttttccttcatatcCcagggagaagcatttgcctg	8	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231174515	A	A	231174515	1	1	41	0	1	0	0	0	0	0	0	0	15076	638	22	2		2	SP140	2	231174515	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	22163929	231174515	12024858	131	48103											
DIS3L2	129563	broad.mit.edu	37	chr2	232978765	232978765	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaactgactcagggcaagAggacagcttcatttccctat	10	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232978765	G	G	232978765	1	3	41	0	1	0	0	0	0	0	0	0	4577	319	11	5		5	DIS3L2	2	232978765	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1804250	232978765	10220608	132	48104											
OTOS	150677	broad.mit.edu	37	chr2	241078680	241078680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcctcgatctgggggtaGgcccccagggcctggaagtg	16	11	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241078680	T	T	241078680	2	4	41	1	0	0	0	0	0	0	0	1	11403	987	35	2		2	OTOS	2	241078680	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8099915	241078680	2120693	133	48105											
FANCD2	2177	broad.mit.edu	37	chr3	10067977	10067977	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggccttctctcgcccctaTgcccggctagcacagaactc	9	17	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10067977	A	A	10067977	1	1	41	0	1	0	0	0	0	0	0	0	5722	1479	51	5		5	FANCD2	3	10067977	5'Flank	SNP	T	TCGA-17-Z008-01A-01W-0746-08		10067977	187954453	134	48106											
FGD5	152273	broad.mit.edu	37	chr3	14964666	14964666	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaagcggggcagggctgtCccgggcctgatgagaggtaa	18	8	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14964666	A	A	14964666	2	1	41	1	0	0	0	0	0	0	0	1	5893	842	30	3		3	FGD5	3	14964666	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4896689	14964666	183057764	135	48107											
GALNTL2	117248	broad.mit.edu	37	chr3	16237376	16237376	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacacagcatcctcgacAcagtgcccagggccttcctg	9	16	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16237376	G	G	16237376	3	3	41	1	0	0	0	0	1	0	0	0	6284	159	6	5	655	5	GALNTL2	3	16237376	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1272710	16237376	181785054	136	48108											
SUSD5	26032	broad.mit.edu	37	chr3	33194834	33194834	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactgaactatgggtcatGccctcgcttggtgtgagggt	14	8	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33194834	T	T	33194834	2	4	41	1	0	0	0	0	0	0	0	1	15529	1306	46	3		3	SUSD5	3	33194834	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	16957458	33194834	164827596	137	48109											
ACAA1	30	broad.mit.edu	37	chr3	38169247	38169247	+	Intron	DEL	T	-	-													aaaacctcactctccagcccTttaaacattcctccccaatc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38169247	-	-	38169247	6	5	41	0	1	1	0	1	0	0	0	0	104	1624	56	0		0	ACAA1	3	38169247	Intron	DEL	T	TCGA-17-Z008-01A-01W-0746-08	4974413	38169247	159853183	138	48110											
XIRP1	165904	broad.mit.edu	37	chr3	39227957	39227957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccaatggcctgaggagGgcaaggggtggcccctgagg	17	10	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39227957	T	T	39227957	3	4	41	1	0	0	0	0	1	0	0	0	17556	1232	43	2	2555	2	XIRP1	3	39227957	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1058710	39227957	158794473	139	48111											
COL7A1	1294	broad.mit.edu	37	chr3	48603688	48603688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgggagactgcgggctgGgcaccactcaccacagtgct	15	12	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48603688	T	T	48603688	1	4	41	0	1	0	0	0	0	0	0	0	3736	1247	43	2		2	COL7A1	3	48603688	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	9375731	48603688	149418742	140	48112											
LRIG1	26018	broad.mit.edu	37	chr3	66436685	66436685	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccaccatagccatggtGgtttctggctgggtgatgat	13	9	1	2	rs149185220	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66436685	T	T	66436685	2	4	41	1	0	0	0	0	0	0	0	1	9031	1335	47	2		2	LRIG1	3	66436685	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	17832997	66436685	131585745	141	48113											
CRYBG3	131544	broad.mit.edu	37	chr3	97617768	97617768	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactatttgaatctgacctAgaaagtgggaagtttattga	9	5	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97617768	G	G	97617768	2	3	41	1	0	0	0	0	0	0	0	1	3945	407	15	5		5	CRYBG3	3	97617768	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	31181083	97617768	100404662	142	48114											
IMPG2	50939	broad.mit.edu	37	chr3	101017060	101017060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtcagagactaggattGcaacccctgctttttttttt	7	8	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101017060	T	T	101017060	1	4	41	0	1	0	0	0	0	0	0	0	7799	1334	46	3		3	IMPG2	3	101017060	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3399292	101017060	97005370	143	48115											
KIAA1407	57577	broad.mit.edu	37	chr3	113697048	113697048	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctgtcactgtgctccGctgcaatctcatgcttgccc	7	17	3	0	rs145062166	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113697048	A	A	113697048	3	1	41	1	0	0	0	0	1	0	0	0	8299	1087	38	4	227	4	KIAA1407	3	113697048	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	12679988	113697048	84325382	144	48116											
STXBP5L	9515	broad.mit.edu	37	chr3	120998717	120998717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaagacagtactgttaaGcatggggaccattgacctat	10	8	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120998717	T	T	120998717	3	4	41	1	0	0	0	0	1	0	0	0	15475	971	34	3	2094	3	STXBP5L	3	120998717	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	7301669	120998717	77023713	145	48117											
MCM2	4171	broad.mit.edu	37	chr3	127339645	127339645	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactatgtgatcgaagacgaCgtcaacatggccatccgcgt	11	11	1	2	rs143447982	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127339645	T	T	127339645	2	4	41	1	0	0	0	0	0	0	0	1	9479	535	19	4		4	MCM2	3	127339645	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6340928	127339645	70682785	146	48118											
MRAS	22808	broad.mit.edu	37	chr3	138119381	138119381	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctttgccttccagattccGtacatagaaaccagtgccaa	7	12	0	2	rs149904534	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138119381	A	A	138119381	2	1	41	1	0	0	0	0	0	0	0	1	9849	1132	40	4		4	MRAS	3	138119381	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	10779736	138119381	59903049	147	48119											
SI	6476	broad.mit.edu	37	chr3	164781289	164781289	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccagatgtatcttcaataCacataaagaatgtttgatgg	7	6	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164781289	G	G	164781289	3	3	41	1	0	0	0	0	1	0	0	0	14410	478	17	4	4799	4	SI	3	164781289	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	26661908	164781289	33241141	148	48120											
BCHE	590	broad.mit.edu	37	chr3	165548032	165548032	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgttcctagcttcataaaGagatgttaccgcccaaggag	9	10	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165548032	C	C	165548032	3	2	41	1	0	0	0	0	1	0	0	0	1363	942	33	4	1030	4	BCHE	3	165548032	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	766743	165548032	32474398	149	48121											
DCUN1D1	54165	broad.mit.edu	37	chr3	182673076	182673076	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaccaatatcaaaatccaAatcatcatcactttcttcac	0	12	6	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182673076	T	T	182673076	1	4	41	0	1	0	0	0	0	0	0	0	4346	29	1	5		5	DCUN1D1	3	182673076	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	17125044	182673076	15349354	150	48122											
ADIPOQ	9370	broad.mit.edu	37	chr3	186572035	186572036	+	Missense_Mutation	DNP	GG	TT	TT													ccggggctgaaggtccccgaGgctttccgggaatccaaggc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	186572036	TT	TT	186572035	3	4	41	1	0	0	0	0	1	0	0	0	317	1000	35	2	283	2	ADIPOQ	3	186572035	Missense_Mutation	DNP	GG	TCGA-17-Z008-01A-01W-0746-08	3898959	186572035	11450395	151	48123											
LMLN	89782	broad.mit.edu	37	chr3	197712706	197712706	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcattctaccatgataaaGatggaaatcctctcacttca	5	10	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197712706	T	T	197712706	3	4	41	1	0	0	0	0	1	0	0	0	8921	942	33	3	904	3	LMLN	3	197712706	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	11140671	197712706	309724	152	48124											
ZNF595	152687	broad.mit.edu	37	chr4	62390	62390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggtagtattcccagaGgtggtattgctgaattatgt	11	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62390	T	T	62390	1	4	41	0	1	0	0	0	0	0	0	0	18152	1015	35	2		2	ZNF595	4	62390	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08		62390	191091886	153	48125											
ZNF595	152687	broad.mit.edu	37	chr4	85696	85696	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattccacaaacttatactgAaaagatacgagaaatgtgga	7	7	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85696	C	C	85696	3	2	41	1	0	0	0	0	1	0	0	0	18152	247	9	5	315	5	ZNF595	4	85696	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	23306	85696	191068580	154	48126											
POLN	353497	broad.mit.edu	37	chr4	2160808	2160808	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttcagccattatggatttGtgttgacagacacagggcca	10	9	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2160808	A	A	2160808	1	1	41	0	1	0	0	0	0	0	0	0	12302	1392	48	4		4	POLN	4	2160808	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2075112	2160808	188993468	155	48127											
PI4K2B	55300	broad.mit.edu	37	chr4	25256645	25256645	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttatggatgattatctatAtatgtaaaaagtctaataag	6	2	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25256645	G	G	25256645	1	3	41	0	1	0	0	0	0	0	0	0	11967	464	16	5		5	PI4K2B	4	25256645	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	23095837	25256645	165897631	156	48128											
PCDH7	5099	broad.mit.edu	37	chr4	30880151	30880151	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggagaggaagctgggcatCcagatggtcatctaaggcag	15	7	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30880151	T	T	30880151	1	4	41	0	1	0	0	0	0	0	0	0	11610	870	30	4		4	PCDH7	4	30880151	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5623506	30880151	160274125	157	48129											
CWH43	80157	broad.mit.edu	37	chr4	49033040	49033040	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctaggctgcataggcttgGagtggcaagttgatattgta	15	5	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49033040	T	T	49033040	1	4	41	0	1	0	0	0	0	0	0	0	4106	1189	41	3		3	CWH43	4	49033040	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	18152889	49033040	142121236	158	48130											
C4orf14	84273	broad.mit.edu	37	chr4	57832821	57832821	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctgcatgcttctgatacaGagcgtctgccctgtccaagg	10	13	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57832821	A	A	57832821	2	1	41	1	0	0	0	0	0	0	0	1	2274	933	33	4		4	C4orf14	4	57832821	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8799781	57832821	133321455	159	48131											
UGT2B4	7363	broad.mit.edu	37	chr4	70360774	70360774	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacaaaaataccccactacCctgactttatggctttatac	3	12	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70360774	T	T	70360774	1	4	41	0	1	0	0	0	0	0	0	0	17087	638	22	4		4	UGT2B4	4	70360774	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	12527953	70360774	120793502	160	48132											
GC	2638	broad.mit.edu	37	chr4	72623860	72623860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctccagatcagcagtagGcactttttgggctaacttta	8	10	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72623860	T	T	72623860	3	4	41	1	0	0	0	0	1	0	0	0	6344	1203	42	3	718	3	GC	4	72623860	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2263086	72623860	118530416	161	48133											
UNC5C	8633	broad.mit.edu	37	chr4	96171636	96171636	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaccctgaagggccactcAccatagactatgacagtggc	11	12	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96171636	T	T	96171636	5	4	41	1	0	0	0	0	0	0	1	0	17119	173	6	5	2066	5	UNC5C	4	96171636	Splice_Site	SNP	A	TCGA-17-Z008-01A-01W-0746-08	23547776	96171636	94982640	162	48134											
TACR3	6870	broad.mit.edu	37	chr4	104510918	104510918	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatttggaattcctgcgaGagcagccattgaaacttggg	12	8	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104510918	T	T	104510918	3	4	41	1	0	0	0	0	1	0	0	0	15626	942	33	3	82	3	TACR3	4	104510918	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8339282	104510918	86643358	163	48135											
INPP4B	8821	broad.mit.edu	37	chr4	143045636	143045636	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gataccaaaactttaaggatCtttttaaaaataaagctgtc	5	6	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143045636	T	T	143045636	1	4	41	0	1	0	0	0	0	0	0	0	7823	928	32	4		4	INPP4B	4	143045636	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	38534718	143045636	48108640	164	48136											
GYPA	2993	broad.mit.edu	37	chr4	145041810	145041810	+	Intron	DEL	A	-	-													cggaccataaagcatattgcAaaagacaaattccctcacat							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145041810	-	-	145041810	6	5	41	0	1	1	0	1	0	0	0	0	6973	145	5	0		0	GYPA	4	145041810	Intron	DEL	A	TCGA-17-Z008-01A-01W-0746-08	1996174	145041810	46112466	165	48137											
GRIA2	2891	broad.mit.edu	37	chr4	158257526	158257527	+	Splice_Site	DNP	CA	AT	AT													actttcctttttttcccttaCagaaagctgatattgcaatt							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	158257527	AT	AT	158257526	5	1	41	1	0	0	0	0	0	0	1	0	6834	493	17	3		3	GRIA2	4	158257526	Splice_Site	DNP	CA	TCGA-17-Z008-01A-01W-0746-08	13215716	158257526	32896750	166	48138											
FAM198B	51313	broad.mit.edu	37	chr4	159091677	159091677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttgagccccaggatcCtgtctaggtggaaggcaaac	12	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159091677	A	A	159091677	3	1	41	1	0	0	0	0	1	0	0	0	5576	681	24	2	829	2	FAM198B	4	159091677	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	834151	159091677	32062599	167	48139											
MARCH1	55016	broad.mit.edu	37	chr4	165118930	165118930	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaataaacctcgaacccaCggccgcacgttttaggactt	7	13	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118930	A	A	165118930	1	1	41	0	1	0	0	0	0	0	0	0	9390	551	19	3		3	MARCH1	4	165118930	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6027253	165118930	26035346	168	48140											
WDR17	116966	broad.mit.edu	37	chr4	177049933	177049933	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttggaatgtttcaagaacaAcacctattgataatcttaaa	5	6	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177049933	T	T	177049933	3	4	41	1	0	0	0	0	1	0	0	0	17404	43	2	5	929	5	WDR17	4	177049933	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	11931003	177049933	14104343	169	48141											
VEGFC	7424	broad.mit.edu	37	chr4	177608492	177608492	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttttcatcaaattctcGgttggccccacattggctgg	10	10	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177608492	T	T	177608492	2	4	41	1	0	0	0	0	0	0	0	1	17279	1124	39	1		1	VEGFC	4	177608492	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	558559	177608492	13545784	170	48142											
VEGFC	7424	broad.mit.edu	37	chr4	177608587	177608587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtccacagctggcaggcCgaagccccgctctgcagaca	14	15	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608587	A	A	177608587	3	1	41	1	0	0	0	0	1	0	0	0	17279	652	23	1	371	1	VEGFC	4	177608587	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	95	177608587	13545689	171	48143											
TPPP	11076	broad.mit.edu	37	chr5	665282	665282	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagccggacacatagcctgActcgtccaccagatccacgc	9	16	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	665282	G	G	665282	3	3	41	1	0	0	0	0	1	0	0	0	16537	275	10	5	68	5	TPPP	5	665282	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08		665282	180249978	172	48144											
BRD9	65980	broad.mit.edu	37	chr5	887437	887437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgacggggggcagagcccCtgctttccgtagctcgctgc	15	14	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	887437	A	A	887437	1	1	41	0	1	0	0	0	0	0	0	0	1516	696	24	2		2	BRD9	5	887437	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	222155	887437	180027823	173	48145											
IRX1	79192	broad.mit.edu	37	chr5	3599550	3599550	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggcgagaagatcatgcTggccatcatcaccaagatga	11	10	3	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3599550	C	C	3599550	3	2	41	1	0	0	0	0	1	0	0	0	7913	1580	55	5	494	5	IRX1	5	3599550	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2712113	3599550	177315710	174	48146											
MTRR	4552	broad.mit.edu	37	chr5	7869175	7869175	+	5'Flank	SNP	A	C	C													agcaaacgcggggcgggagcAcgactcagggcggcgcaatg							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7869175	C	C	7869175	1	2	41	0	1	0	0	0	0	0	0	0	10055	174	6	5		5	MTRR	5	7869175	5'Flank	SNP	A	TCGA-17-Z008-01A-01W-0746-08	4269625	7869175	173046085	175	48147	239	2									
MTRR	4552	broad.mit.edu	37	chr5	7869177	7869177	+	5'Flank	SNP	G	C	C													caaacgcggggcgggagcacGactcagggcggcgcaatgtg							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7869177	C	C	7869177	1	2	41	0	1	0	0	0	0	0	0	0	10055	1073	37	4		4	MTRR	5	7869177	5'Flank	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2	7869177	173046083	176	48148	239	2									
MARCH6	10299	broad.mit.edu	37	chr5	10425417	10425417	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcttctggcttcatatccCttcaggatcagagtgcaggc	12	11	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10425417	G	G	10425417	1	3	41	0	1	0	0	0	0	0	0	0	9397	696	24	4		4	MARCH6	5	10425417	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2556240	10425417	170489843	177	48149											
CTNND2	1501	broad.mit.edu	37	chr5	11365028	11365028	+	Intron	SNP	C	T	T													ataaatcaacagagggacatCaaagctcaggcgacctccaa							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11365028	T	T	11365028	1	4	41	0	1	0	0	0	0	0	0	0	4054	841	29	4		4	CTNND2	5	11365028	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	939611	11365028	169550232	178	48150	240	2									
CTNND2	1501	broad.mit.edu	37	chr5	11365032	11365032	+	Intron	SNP	G	A	A													atcaacagagggacatcaaaGctcaggcgacctccaaacag							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11365032	A	A	11365032	1	1	41	0	1	0	0	0	0	0	0	0	4054	986	34	4		4	CTNND2	5	11365032	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4	11365032	169550228	179	48151	240	2									
DNAH5	1767	broad.mit.edu	37	chr5	13777181	13777181	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaatagaaaaacccatccTtcatactgatcacttaatac	2	13	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13777181	A	A	13777181	1	1	41	0	1	0	0	0	0	0	0	0	4644	1624	56	5		5	DNAH5	5	13777181	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2412149	13777181	167138079	180	48152											
CDH10	1008	broad.mit.edu	37	chr5	24488165	24488165	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctctccaccaccctcatcGttatagctcacaatgttgtc	4	16	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24488165	C	C	24488165	3	2	41	1	0	0	0	0	1	0	0	0	3126	1136	40	4	396	4	CDH10	5	24488165	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	10710984	24488165	156427095	181	48153											
CDH10	1008	broad.mit.edu	37	chr5	24498602	24498602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaattctcacaaaaacagCcacgcgtgttgtctctttgg	7	11	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24498602	A	A	24498602	3	1	41	1	0	0	0	0	1	0	0	0	3126	739	26	3	962	3	CDH10	5	24498602	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	10437	24498602	156416658	182	48154											
ADAMTS12	81792	broad.mit.edu	37	chr5	33546180	33546180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccaggtcccagttcccaGtggcccagtgacagcacagg	11	14	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33546180	T	T	33546180	3	4	41	1	0	0	0	0	1	0	0	0	257	1029	36	3	366	3	ADAMTS12	5	33546180	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	9047578	33546180	147369080	183	48155											
SPEF2	79925	broad.mit.edu	37	chr5	35806912	35806912	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacacggagaaaagggaacAgaaggatgaagaaatccctg	13	7	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35806912	T	T	35806912	3	4	41	1	0	0	0	0	1	0	0	0	15153	188	7	5	5273	5	SPEF2	5	35806912	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2260732	35806912	145108348	184	48156											
LMBRD2	92255	broad.mit.edu	37	chr5	36105339	36105339	+	Intron	DEL	C	-	-													aatgtctacttccctactgtCttttaacttatgggtcacag							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36105339	-	-	36105339	6	5	41	0	1	1	0	1	0	0	0	0	8917	928	32	0		0	LMBRD2	5	36105339	Intron	DEL	C	TCGA-17-Z008-01A-01W-0746-08	298427	36105339	144809921	185	48157											
EGFLAM	133584	broad.mit.edu	37	chr5	38427022	38427022	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaattgtagtttaggtctgTacccaggagggaaagaacac	13	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38427022	C	C	38427022	1	2	41	0	1	0	0	0	0	0	0	0	5006	1653	57	5		5	EGFLAM	5	38427022	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2321683	38427022	142488238	186	48158											
C9	735	broad.mit.edu	37	chr5	39311136	39311137	+	Intron	DNP	GG	TT	TT													tctcaaaggagcaggttacaGggctttgtattcttaagact							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39311137	TT	TT	39311136	1	4	41	0	1	0	0	0	0	0	0	0	2469	1015	35	2		2	C9	5	39311136	Intron	DNP	GG	TCGA-17-Z008-01A-01W-0746-08	884114	39311136	141604124	187	48159											
C9	735	broad.mit.edu	37	chr5	39342057	39342057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaaagttagcaacataCatttaaatgtttatctctct	5	7	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39342057	A	A	39342057	1	1	41	0	1	0	0	0	0	0	0	0	2469	493	17	3		3	C9	5	39342057	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	30921	39342057	141573203	188	48160											
CMYA5	202333	broad.mit.edu	37	chr5	79033557	79033557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctcatttaaaaccatacCactccctgatgatagtgaaa	5	11	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79033557	T	T	79033557	3	4	41	1	0	0	0	0	1	0	0	0	3622	594	21	4	8975	4	CMYA5	5	79033557	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	39691500	79033557	101881703	189	48161											
AQPEP	206338	broad.mit.edu	37	chr5	115348045	115348045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgcaagccagaactaaCagtgtattttctttattgtt	7	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115348045	A	A	115348045	1	1	41	0	1	0	0	0	0	0	0	0	836	493	17	3		3	AQPEP	5	115348045	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	36314488	115348045	65567215	190	48162											
PPIC	5480	broad.mit.edu	37	chr5	122359589	122359589	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccaatcagcgatctcaAccacaaaaggcgttttcacg	7	13	4	0	rs147078691	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122359589	G	G	122359589	3	3	41	1	0	0	0	0	1	0	0	0	12421	43	2	5	22	5	PPIC	5	122359589	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	7011544	122359589	58555671	191	48163											
KDM3B	51780	broad.mit.edu	37	chr5	137756274	137756274	+	Intron	DEL	G	-	-													aaacaaaccatacacagtttGgggggtgcaagggaaaggag							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	137756274	-	-	137756274	6	5	41	0	1	1	0	1	0	0	0	0	8197	1363	47	0		0	KDM3B	5	137756274	Intron	DEL	G	TCGA-17-Z008-01A-01W-0746-08	15396685	137756274	43158986	192	48164											
LRRTM2	26045	broad.mit.edu	37	chr5	138209593	138209593	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaaatgagcaaaattaatCttcgtcagctggttgtgctc	10	7	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138209593	G	G	138209593	3	3	41	1	0	0	0	0	1	0	0	0	9127	912	32	4	897	4	LRRTM2	5	138209593	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	453319	138209593	42705667	193	48165											
LRRTM2	26045	broad.mit.edu	37	chr5	138209614	138209614	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtcagctggttgtgctcTaggtgaagctctctcagttt	11	9	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138209614	C	C	138209614	2	2	41	1	0	0	0	0	0	0	0	1	9127	1509	53	5		5	LRRTM2	5	138209614	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	21	138209614	42705646	194	48166											
PCDHA4	56144	broad.mit.edu	37	chr5	140188732	140188732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggtactggtgaaggacCacggcgagcccgcgctgacg	15	12	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140188732	A	A	140188732	3	1	41	1	0	0	0	0	1	0	0	0	11620	594	21	2	1962	2	PCDHA4	5	140188732	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1979118	140188732	40726528	195	48167											
PCDHB9	56127	broad.mit.edu	37	chr5	140568931	140568931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggaggcggccccggcccaGgcccaggccgacttgctcac	14	19	1	0	rs17844543		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140568931	T	T	140568931	3	4	41	1	0	0	0	0	1	0	0	0	11643	1000	35	2	2041	2	PCDHB9	5	140568931	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	380199	140568931	40346329	196	48168											
PCDHB14	56122	broad.mit.edu	37	chr5	140605042	140605042	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcctcctcgctcggccacCgccacgctgcacgtgctcct	10	20	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605042	T	T	140605042	2	4	41	1	0	0	0	0	0	0	0	1	11633	639	23	4		4	PCDHB14	5	140605042	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	36111	140605042	40310218	197	48169											
PCDHGA2	56113	broad.mit.edu	37	chr5	140718666	140718666	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaagagatcgacagaggctCcttcgtaggcaacatcgcca	12	11	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140718666	G	G	140718666	3	3	41	1	0	0	0	0	1	0	0	0	11648	855	30	4	130	4	PCDHGA2	5	140718666	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	113624	140718666	40196594	198	48170											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773068	140773068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcacagtgcgcatccacGtgacagtgttggatacaaat	10	10	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140773068	T	T	140773068	3	4	41	1	0	0	0	0	1	0	0	0	11654	1145	40	3	690	3	PCDHGA8	5	140773068	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	54402	140773068	40142192	199	48171											
SH3RF2	153769	broad.mit.edu	37	chr5	145428763	145428763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtctccttggtcaccgGgcgagtcggcatcttcccaa	13	14	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145428763	T	T	145428763	3	4	41	1	0	0	0	0	1	0	0	0	14372	1232	43	2	1299	2	SH3RF2	5	145428763	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4655695	145428763	35486497	200	48172											
PPP2R2B	5521	broad.mit.edu	37	chr5	146007885	146007886	+	Intron	DNP	AG	TT	TT													aagtcagactgcccctggacAggaaggctgctttggtgtca							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	146007886	TT	TT	146007885	1	4	41	0	1	0	0	0	0	0	0	0	12486	203	7	5		5	PPP2R2B	5	146007885	Intron	DNP	AG	TCGA-17-Z008-01A-01W-0746-08	579122	146007885	34907375	201	48173											
JAKMIP2	9832	broad.mit.edu	37	chr5	147012124	147012124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataattttgagggtgattGtgaggtccaaatgagagtat	12	2	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147012124	T	T	147012124	1	4	41	0	1	0	0	0	0	0	0	0	8011	1392	48	3		3	JAKMIP2	5	147012124	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1004239	147012124	33903136	202	48174											
ABLIM3	22885	broad.mit.edu	37	chr5	148577839	148577839	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagaaccaggagtacatctGcacccaggactaccagcaac	8	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148577839	C	C	148577839	3	2	41	1	0	0	0	0	1	0	0	0	96	1319	46	4	219	4	ABLIM3	5	148577839	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1565715	148577839	32337421	203	48175											
GRPEL2	134266	broad.mit.edu	37	chr5	148727818	148727818	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttcttcattatgtgccaCctccttcctgttttagggga	7	11	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148727818	T	T	148727818	1	4	41	0	1	0	0	0	0	0	0	0	6873	522	18	4		4	GRPEL2	5	148727818	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	149979	148727818	32187442	204	48176											
PDE6A	5145	broad.mit.edu	37	chr5	149301211	149301211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtactcttccatccggaGtcctgggaccagagtaaggt	11	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149301211	T	T	149301211	3	4	41	1	0	0	0	0	1	0	0	0	11739	1029	36	3	1734	3	PDE6A	5	149301211	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	573393	149301211	31614049	205	48177											
G3BP1	10146	broad.mit.edu	37	chr5	151183402	151183402	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatctttgatagtgatagcCagctcatcagtactcttaag	7	8	4	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151183402	T	T	151183402	1	4	41	0	1	0	0	0	0	0	0	0	6201	609	21	4		4	G3BP1	5	151183402	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1882191	151183402	29731858	206	48178											
GLRA1	2741	broad.mit.edu	37	chr5	151239241	151239241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggtgttgggttgccagGgcctgttcacctctgtttgg	14	9	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151239241	T	T	151239241	1	4	41	0	1	0	0	0	0	0	0	0	6518	1247	43	2		2	GLRA1	5	151239241	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	55839	151239241	29676019	207	48179											
ADAM19	8728	broad.mit.edu	37	chr5	156917548	156917548	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtattcgtgcttcttcttcAggcatttgatttgcatttaa	8	7	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156917548	G	G	156917548	1	3	41	0	1	0	0	0	0	0	0	0	240	203	7	5		5	ADAM19	5	156917548	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	5678307	156917548	23997712	208	48180											
ATP10B	23120	broad.mit.edu	37	chr5	160097655	160097655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatccttccagcacttctGcacataggtctgctcttttc	5	15	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160097655	T	T	160097655	3	4	41	1	0	0	0	0	1	0	0	0	1121	1328	46	3	3975	3	ATP10B	5	160097655	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3180107	160097655	20817605	209	48181											
DOCK2	1794	broad.mit.edu	37	chr5	169186708	169186708	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattttacattccacctaGgtggcggctttgaaatacat	8	8	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169186708	T	T	169186708	5	4	41	1	0	0	0	0	0	0	1	0	4727	1014	35	2	2470	2	DOCK2	5	169186708	Splice_Site	SNP	G	TCGA-17-Z008-01A-01W-0746-08	9089053	169186708	11728552	210	48182											
STK10	6793	broad.mit.edu	37	chr5	171481638	171481638	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catgtcccgcatctggttctCgtgtttctgctgttgctgca	10	12	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171481638	G	G	171481638	3	3	41	1	0	0	0	0	1	0	0	0	15404	893	31	4	331	4	STK10	5	171481638	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2294930	171481638	9433622	211	48183											
CANX	821	broad.mit.edu	37	chr5	179150789	179150789	+	Intron	DEL	T	-	-													tgttctggaaaggtaggaagTttttttttttagaatcaatt							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179150789	-	-	179150789	6	5	41	0	1	1	0	1	0	0	0	0	2644	1740	60	0		0	CANX	5	179150789	Intron	DEL	T	TCGA-17-Z008-01A-01W-0746-08	7669151	179150789	1764471	212	48184											
RREB1	6239	broad.mit.edu	37	chr6	7231500	7231500	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgctgcttttgccaaagccCcccgtgacagaagagctgcc	10	16	0	3	rs137943791	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7231500	T	T	7231500	2	4	41	1	0	0	0	0	0	0	0	1	13790	610	22	4		4	RREB1	6	7231500	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08		7231500	163883567	213	48185											
BMP6	654	broad.mit.edu	37	chr6	7880411	7880411	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctaaggtaccttctccccTtctgttttggaacaggttca	7	11	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7880411	A	A	7880411	1	1	41	0	1	0	0	0	0	0	0	0	1470	1624	56	5		5	BMP6	6	7880411	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	648911	7880411	163234656	214	48186											
SLC17A1	6568	broad.mit.edu	37	chr6	25813486	25813486	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaagtctctgtttgtagTggatctctttcccagaatgg	11	7	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25813486	C	C	25813486	1	2	41	0	1	0	0	0	0	0	0	0	14529	1711	59	5		5	SLC17A1	6	25813486	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	17933075	25813486	145301581	215	48187											
PRSS16	10279	broad.mit.edu	37	chr6	27220550	27220550	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcttgctgggaagagaggAggaatttatgtcttatgtat	14	3	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27220550	T	T	27220550	1	4	41	0	1	0	0	0	0	0	0	0	12722	319	11	5		5	PRSS16	6	27220550	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1407064	27220550	143894517	216	48188											
OR2B2	81697	broad.mit.edu	37	chr6	27880161	27880161	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagttaacaacacacttcCtgattttgtcagctataatc	6	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27880161	T	T	27880161	1	4	41	0	1	0	0	0	0	0	0	0	11083	696	24	4		4	OR2B2	6	27880161	5'Flank	SNP	C	TCGA-17-Z008-01A-01W-0746-08	659611	27880161	143234906	217	48189											
HSPA1L	3305	broad.mit.edu	37	chr6	31778903	31778903	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtgaatcaatttctaggtTggcctgggtgctggacgaca	13	7	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31778903	C	C	31778903	3	2	41	1	0	0	0	0	1	0	0	0	7479	1812	63	5	1082	5	HSPA1L	6	31778903	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	3898742	31778903	139336164	218	48190											
TAP2	6891	broad.mit.edu	37	chr6	32797253	32797253	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgggtctcgtacaagggccCgggcaatggccagacgttgt	16	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32797253	T	T	32797253	3	4	41	1	0	0	0	0	1	0	0	0	15670	652	23	4	297	4	TAP2	6	32797253	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1018350	32797253	138317814	219	48191											
GRM4	2914	broad.mit.edu	37	chr6	34029580	34029580	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagggtggggtcaggctcGcctgggaaggtctccagcag	17	12	2	0	rs148995261	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34029580	A	A	34029580	1	1	41	0	1	0	0	0	0	0	0	0	6865	1102	38	4		4	GRM4	6	34029580	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1232327	34029580	137085487	220	48192											
MAPK14	1432	broad.mit.edu	37	chr6	36050416	36050416	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaacaaccagcatttgcAtgaactgatagagcgagaac	8	8	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36050416	T	T	36050416	1	4	41	0	1	0	0	0	0	0	0	0	9368	232	8	5		5	MAPK14	6	36050416	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2020836	36050416	135064651	221	48193											
LRFN2	57497	broad.mit.edu	37	chr6	40361177	40361177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagggaatgagaaaggagGtagttgaaagaagagaaaag	16	0	0	5			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40361177	T	T	40361177	1	4	41	0	1	0	0	0	0	0	0	0	9025	1276	44	3		3	LRFN2	6	40361177	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4310761	40361177	130753890	222	48194											
MDFI	4188	broad.mit.edu	37	chr6	41606654	41606654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctccgtccccagacgcGgggagaccgttccagggagc	13	16	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41606654	T	T	41606654	1	4	41	0	1	0	0	0	0	0	0	0	9497	1131	39	1		1	MDFI	6	41606654	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1245477	41606654	129508413	223	48195											
PRPH2	5961	broad.mit.edu	37	chr6	42689526	42689526	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaggaaaagtccaggtagcGattgctgatccactgaatct	12	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42689526	A	A	42689526	3	1	41	1	0	0	0	0	1	0	0	0	12683	1058	37	4	505	4	PRPH2	6	42689526	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1082872	42689526	128425541	224	48196											
TFAP2B	7021	broad.mit.edu	37	chr6	50803999	50803999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtcctcagaaggtaacCccaccacgaaaaacaaaaac	7	13	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50803999	A	A	50803999	1	1	41	0	1	0	0	0	0	0	0	0	15911	638	22	2		2	TFAP2B	6	50803999	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	8114473	50803999	120311068	225	48197											
GSTA1	2938	broad.mit.edu	37	chr6	52671555	52671555	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatggctcttcaacacctgGagaatcagaggaaacagatc	9	11	3	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52671555	A	A	52671555	1	1	41	0	1	0	0	0	0	0	0	0	6896	1189	41	4		4	GSTA1	6	52671555	5'Flank	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1867556	52671555	118443512	226	48198											
BAI3	577	broad.mit.edu	37	chr6	69349085	69349085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttgccatgtattatgtaCttggttggagagctgcttaa	12	5	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69349085	A	A	69349085	3	1	41	1	0	0	0	0	1	0	0	0	1305	565	20	3	520	3	BAI3	6	69349085	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	16677530	69349085	101765982	227	48199											
RIMS1	22999	broad.mit.edu	37	chr6	73043628	73043628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttgtgatggaattgtgGcatatttggttcttctttga	12	4	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73043628	T	T	73043628	1	4	41	0	1	0	0	0	0	0	0	0	13478	1218	42	3		3	RIMS1	6	73043628	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3694543	73043628	98071439	228	48200											
SH3BGRL2	83699	broad.mit.edu	37	chr6	80355587	80355587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctatttgctatgtgcttGgtgctagcatggtgtcagcc	12	8	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80355587	T	T	80355587	1	4	41	0	1	0	0	0	0	0	0	0	14355	1363	47	2		2	SH3BGRL2	6	80355587	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	7311959	80355587	90759480	229	48201											
TTK	7272	broad.mit.edu	37	chr6	80751919	80751919	+	Nonstop_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaggggaaaaaaatgAtttgcagttattcgtaatgt	9	2	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80751919	G	G	80751919	4	3	41	1	0	0	0	0	0	0	0	0	16846	346	12	5	2656	5	TTK	6	80751919	Nonstop_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	396332	80751919	90363148	230	48202											
BACH2	60468	broad.mit.edu	37	chr6	90660046	90660046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttccgagaacgatccGgattcgtcactggagttggt	12	10	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90660046	T	T	90660046	2	4	41	1	0	0	0	0	0	0	0	1	1289	1103	39	1		1	BACH2	6	90660046	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	9908127	90660046	80455021	231	48203											
FUT9	10690	broad.mit.edu	37	chr6	96651197	96651197	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaaaaacttcttttccAccaaaactgattattttaat	2	7	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96651197	T	T	96651197	3	4	41	1	0	0	0	0	1	0	0	0	6171	159	6	5	168	5	FUT9	6	96651197	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	5991151	96651197	74463870	232	48204											
FHL5	9457	broad.mit.edu	37	chr6	97053770	97053770	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctaacatggccttacttttgGagtacaggttcccgcaaaat	8	10	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97053770	A	A	97053770	1	1	41	0	1	0	0	0	0	0	0	0	5938	1189	41	4		4	FHL5	6	97053770	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	402573	97053770	74061297	233	48205											
SIM1	6492	broad.mit.edu	37	chr6	100838958	100838959	+	Missense_Mutation	DNP	TG	AT	AT													ccacactatcttcatcccaaTgacctcgccctaaaaattag							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	100838959	AT	AT	100838958	3	1	41	1	0	0	0	0	1	0	0	0	14436	1464	51	5	724	5	SIM1	6	100838958	Missense_Mutation	DNP	TG	TCGA-17-Z008-01A-01W-0746-08	3785188	100838958	70276109	234	48206											
ARMC2	84071	broad.mit.edu	37	chr6	109175689	109175689	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctccttcctccttcagGtatatggcatttcacattca	5	13	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109175689	T	T	109175689	5	4	41	1	0	0	0	0	0	0	1	0	955	1275	44	3	221	3	ARMC2	6	109175689	Splice_Site	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8336731	109175689	61939378	235	48207											
KIAA1919	91749	broad.mit.edu	37	chr6	111583510	111583510	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaagatttggcaacaaaCgtgaaccgaaatatcagtag	8	7	2	2	rs140746881	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111583510	T	T	111583510	2	4	41	1	0	0	0	0	0	0	0	1	8332	535	19	4		4	KIAA1919	6	111583510	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2407821	111583510	59531557	236	48208											
ROS1	6098	broad.mit.edu	37	chr6	117632129	117632129	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctttacctgcactacaGgtgattattgtgccaatatc	8	9	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117632129	A	A	117632129	1	1	41	0	1	0	0	0	0	0	0	0	13642	1015	35	4		4	ROS1	6	117632129	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	6048619	117632129	53482938	237	48209											
CLVS2	134829	broad.mit.edu	37	chr6	123369744	123369744	+	Intron	DEL	T	-	-													attaaagcatattttgattgTttttttctccatgttactct							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123369744	-	-	123369744	6	5	41	0	1	1	0	1	0	0	0	0	3604	1740	60	0		0	CLVS2	6	123369744	Intron	DEL	T	TCGA-17-Z008-01A-01W-0746-08	5737615	123369744	47745323	238	48210											
THEMIS	387357	broad.mit.edu	37	chr6	128134734	128134734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatctctaggtcataggccGttgggaactccctcggtcgc	12	13	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128134734	T	T	128134734	3	4	41	1	0	0	0	0	1	0	0	0	15983	1145	40	3	1006	3	THEMIS	6	128134734	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4764990	128134734	42980333	239	48211											
LAMA2	3908	broad.mit.edu	37	chr6	129609021	129609021	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggctattttggacaaccctCtgtacctggaggatcatgtc	10	10	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129609021	T	T	129609021	3	4	41	1	0	0	0	0	1	0	0	0	8678	913	32	4	2641	4	LAMA2	6	129609021	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1474287	129609021	41506046	240	48212											
VNN1	8876	broad.mit.edu	37	chr6	133032955	133032955	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccataaatagcatcttcTggagtcacaataatatgcgc	7	10	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133032955	C	C	133032955	2	2	41	1	0	0	0	0	0	0	0	1	17309	1567	55	5		5	VNN1	6	133032955	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	3423934	133032955	38082112	241	48213											
SYNE1	23345	broad.mit.edu	37	chr6	152751709	152751709	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctctcgaagctcttcccCgtatcttcttatttgtgtca	6	12	5	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152751709	T	T	152751709	3	4	41	1	0	0	0	0	1	0	0	0	15564	652	23	4	22317	4	SYNE1	6	152751709	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	19718754	152751709	18363358	242	48214											
SYNE1	23345	broad.mit.edu	37	chr6	152949425	152949425	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcctctgcatcacattggcGatatcccgaggacaccggga	11	13	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152949425	A	A	152949425	2	1	41	1	0	0	0	0	0	0	0	1	15564	1048	37	4		4	SYNE1	6	152949425	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	197716	152949425	18165642	243	48215											
IPCEF1	26034	broad.mit.edu	37	chr6	154488990	154488990	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgattagcaagaatctctCtgcagaaccagccgttcctt	8	11	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154488990	G	G	154488990	1	3	41	0	1	0	0	0	0	0	0	0	7861	928	32	4		4	IPCEF1	6	154488990	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1539565	154488990	16626077	244	48216											
SERAC1	84947	broad.mit.edu	37	chr6	158549329	158549329	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caataaataaacagaagctcCcttgacattgtacaaattca	4	9	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158549329	T	T	158549329	1	4	41	0	1	0	0	0	0	0	0	0	14187	638	22	4		4	SERAC1	6	158549329	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4060339	158549329	12565738	245	48217											
LPA	4018	broad.mit.edu	37	chr6	160999577	160999577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcagaaggagcctctgtGcttggaaccggggccactgt	14	10	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160999577	T	T	160999577	3	4	41	1	0	0	0	0	1	0	0	0	8990	1310	46	3	1725	3	LPA	6	160999577	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2450248	160999577	10115490	246	48218											
MAP3K4	4216	broad.mit.edu	37	chr6	161470818	161470818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgaggatgattctcttgGctggggagcaccagactgga	14	8	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161470818	T	T	161470818	3	4	41	1	0	0	0	0	1	0	0	0	9344	1203	42	3	1524	3	MAP3K4	6	161470818	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	471241	161470818	9644249	247	48219											
C6orf118	168090	broad.mit.edu	37	chr6	165714071	165714071	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggacacagctgccatcaCcctggcgagtgggcggggcg	17	12	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165714071	T	T	165714071	1	4	41	0	1	0	0	0	0	0	0	0	2346	522	18	4		4	C6orf118	6	165714071	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4243253	165714071	5400996	248	48220											
THBS2	7058	broad.mit.edu	37	chr6	169640650	169640650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttccttgtcttaggagggCcaccaatgagctcccagaga	11	11	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169640650	A	A	169640650	3	1	41	1	0	0	0	0	1	0	0	0	15977	739	26	3	2657	3	THBS2	6	169640650	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3926579	169640650	1474417	249	48221											
EIF3B	8662	broad.mit.edu	37	chr7	2406619	2406620	+	Intron	INS	-	T	T													tgactcaactgcagccttccINSttttttttgggcagtctatg							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2406620	T	T	2406619	6	5	41	0	1	1	1	0	0	0	0	0	5053	696	24	0		0	EIF3B	7	2406619	Intron	INS	-	TCGA-17-Z008-01A-01W-0746-08		2406619	156732044	250	48222											
IQCE	23288	broad.mit.edu	37	chr7	2624009	2624009	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctgtcacgtgggtgcgGcatatactgcccttagcttg	14	10	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2624009	T	T	2624009	1	4	41	0	1	0	0	0	0	0	0	0	7876	1218	42	3		3	IQCE	7	2624009	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	217390	2624009	156514654	251	48223											
HOXA2	3199	broad.mit.edu	37	chr7	27140790	27140790	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgctcaaagagcgtcttcTcttcctcgtcctcctctact	5	16	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27140790	C	C	27140790	3	2	41	1	0	0	0	0	1	0	0	0	7359	1551	54	5	448	5	HOXA2	7	27140790	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	24516781	27140790	131997873	252	48224											
HOXA3	3200	broad.mit.edu	37	chr7	27149733	27149734	+	Splice_Site	DNP	CC	AA	AA													ttccagaaggcactcctttaCctgagctggagctgctggtt							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	27149734	AA	AA	27149733	5	1	41	1	0	0	0	0	0	0	1	0	7360	521	18	3	812	3	HOXA3	7	27149733	Splice_Site	DNP	CC	TCGA-17-Z008-01A-01W-0746-08	8943	27149733	131988930	253	48225											
LOC402644	402644	broad.mit.edu	37	chr7	28319193	28319193	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttataaccaaatcctttctcTtcagtgctcagagcacgaac	5	12	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28319193	A	A	28319193	3	1	41	1	0	0	0	0	1	0	0	0	8961	1606	56	5	354	5	LOC402644	7	28319193	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1169460	28319193	130819470	254	48226											
CCDC129	223075	broad.mit.edu	37	chr7	31617678	31617678	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaacagaacatcaggcGggattgtaacccagaggtat	10	9	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31617678	C	C	31617678	3	2	41	1	0	0	0	0	1	0	0	0	2790	1116	39	4	826	4	CCDC129	7	31617678	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3298485	31617678	127520985	255	48227											
CCDC129	223075	broad.mit.edu	37	chr7	31682401	31682401	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggactgtcagctagagtcgGatgggccagattccaaaagt	13	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31682401	C	C	31682401	3	2	41	1	0	0	0	0	1	0	0	0	2790	1174	41	4	1455	4	CCDC129	7	31682401	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	64723	31682401	127456262	256	48228											
GLI3	2737	broad.mit.edu	37	chr7	42219507	42219507	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaagatgtcttgcagatatCcaaacagaagtgtctgatgg	10	6	2	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42219507	G	G	42219507	1	3	41	0	1	0	0	0	0	0	0	0	6503	870	30	4		4	GLI3	7	42219507	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	10537106	42219507	116919156	257	48229											
ABCA13	154664	broad.mit.edu	37	chr7	48244245	48244245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgagtactcccctcccCttcctccgcaccttccaccg	5	20	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48244245	A	A	48244245	1	1	41	0	1	0	0	0	0	0	0	0	31	696	24	2		2	ABCA13	7	48244245	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6024738	48244245	110894418	258	48230											
EGFR	1956	broad.mit.edu	37	chr7	55267473	55267473	+	Intron	DEL	C	-	-													gaagttgccagcacagccagCcctctcacttgcatgcatgc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55267473	-	-	55267473	6	5	41	0	1	1	0	1	0	0	0	0	5007	754	26	0		0	EGFR	7	55267473	Intron	DEL	C	TCGA-17-Z008-01A-01W-0746-08	7023228	55267473	103871190	259	48231											
EGFR	1956	broad.mit.edu	37	chr7	55271082	55271083	+	Intron	DEL	AC	-	-													catacacaccacacatacatAcagacacaccacacacacgt							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55271083	-	-	55271082	6	5	41	0	1	1	0	1	0	0	0	0	5007	406	14	0		0	EGFR	7	55271082	Intron	DEL	AC	TCGA-17-Z008-01A-01W-0746-08	3609	55271082	103867581	260	48232											
ZNF479	90827	broad.mit.edu	37	chr7	57188282	57188282	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttagtaagtgctgaggaGcgcctaaaggcttggccaca	14	8	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188282	T	T	57188282	2	4	41	1	0	0	0	0	0	0	0	1	18060	958	34	3		3	ZNF479	7	57188282	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1917200	57188282	101950381	261	48233											
ZNF735	730291	broad.mit.edu	37	chr7	63680318	63680318	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatactggagagagacccTacaaatgtgaagaatgtggc	11	7	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63680318	C	C	63680318	3	2	41	1	0	0	0	0	1	0	0	0	18253	1522	53	5	903	5	ZNF735	7	63680318	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	6492036	63680318	95458345	262	48234											
ZNF679	168417	broad.mit.edu	37	chr7	63726275	63726275	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttttatgtctttcagtTatgtgttctcatttcaccca	5	8	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63726275	A	A	63726275	2	1	41	1	0	0	0	0	0	0	0	1	18213	1768	61	5		5	ZNF679	7	63726275	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	45957	63726275	95412388	263	48235											
WBSCR17	64409	broad.mit.edu	37	chr7	71036410	71036410	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgacatggtgtcccttcCtcttggtgtgcccatgtttg	11	10	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71036410	T	T	71036410	1	4	41	0	1	0	0	0	0	0	0	0	17391	696	24	4		4	WBSCR17	7	71036410	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7310135	71036410	88102253	264	48236											
WBSCR28	135886	broad.mit.edu	37	chr7	73279405	73279405	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtgtcagggctggcccAggaggcccgggggtcctgta	19	11	1	0	rs145787430	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73279405	G	G	73279405	3	3	41	1	0	0	0	0	1	0	0	0	17394	188	7	5	161	5	WBSCR28	7	73279405	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2242995	73279405	85859258	265	48237											
ELN	2006	broad.mit.edu	37	chr7	73474656	73474656	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgggcaggacacctcctTaggggcatgctccctgcctg	12	16	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73474656	C	C	73474656	1	2	41	0	1	0	0	0	0	0	0	0	5113	1769	61	5		5	ELN	7	73474656	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	195251	73474656	85664007	266	48238											
KIAA1324L	222223	broad.mit.edu	37	chr7	86554857	86554857	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttaccattcattccatcGcactttgaattcccaacatt	2	13	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86554857	T	T	86554857	4	4	41	1	0	0	0	0	0	1	0	0	8294	1079	38	3	1755	3	KIAA1324L	7	86554857	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	13080201	86554857	72583806	267	48239											
ABCB1	5243	broad.mit.edu	37	chr7	87174141	87174141	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgcatctcccttcataccaGagcctctttggtactaagct	6	15	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87174141	T	T	87174141	3	4	41	1	0	0	0	0	1	0	0	0	40	933	33	3	1832	3	ABCB1	7	87174141	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	619284	87174141	71964522	268	48240											
ABCB1	5243	broad.mit.edu	37	chr7	87222363	87222363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatcctcccacctcagcCtcccgagtagctgagactac	8	16	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87222363	A	A	87222363	1	1	41	0	1	0	0	0	0	0	0	0	40	696	24	2		2	ABCB1	7	87222363	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	48222	87222363	71916300	269	48241											
C7orf64	84060	broad.mit.edu	37	chr7	92158154	92158154	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgagcggcggggagctaggGagtttatttgatcaccacgt	15	8	1	1	rs117787377	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92158154	A	A	92158154	2	1	41	1	0	0	0	0	0	0	0	1	2435	1161	41	4		4	C7orf64	7	92158154	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4935791	92158154	66980509	270	48242											
CALCR	799	broad.mit.edu	37	chr7	93063376	93063376	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtctgaatcatatttGccattgtactacacatccat	5	11	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93063376	A	A	93063376	1	1	41	0	1	0	0	0	0	0	0	0	2605	1334	46	4		4	CALCR	7	93063376	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	905222	93063376	66075287	271	48243											
SLC25A13	10165	broad.mit.edu	37	chr7	95819103	95819103	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttattattatcatcagtTgtagaattcaagtcaatcca	4	7	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95819103	A	A	95819103	1	1	41	0	1	0	0	0	0	0	0	0	14589	1827	63	5		5	SLC25A13	7	95819103	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2755727	95819103	63319560	272	48244											
TRRAP	8295	broad.mit.edu	37	chr7	98519392	98519392	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctctgtggcgcacctTacgcaaccctgctgacagca	10	15	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98519392	C	C	98519392	3	2	41	1	0	0	0	0	1	0	0	0	16726	1764	61	5	2717	5	TRRAP	7	98519392	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2700289	98519392	60619271	273	48245											
CYP3A5	1577	broad.mit.edu	37	chr7	99250236	99250236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatggtgaagagcataaGttggaatcaccaccattgac	11	8	2	3	rs28365083	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99250236	T	T	99250236	3	4	41	1	0	0	0	0	1	0	0	0	4213	1029	36	3	327	3	CYP3A5	7	99250236	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	730844	99250236	59888427	274	48246											
AGFG2	3268	broad.mit.edu	37	chr7	100160401	100160401	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggggagagattgagaggaAtgctcaggcatcacaggatg	16	5	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100160401	G	G	100160401	1	3	41	0	1	0	0	0	0	0	0	0	381	116	4	5		5	AGFG2	7	100160401	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	910165	100160401	58978262	275	48247											
RELN	5649	broad.mit.edu	37	chr7	103162400	103162400	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatttgcccattaaacttcaGaagagagtcaactatttgga	8	7	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103162400	T	T	103162400	1	4	41	0	1	0	0	0	0	0	0	0	13328	957	33	3		3	RELN	7	103162400	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3001999	103162400	55976263	276	48248											
PUS7	54517	broad.mit.edu	37	chr7	105142947	105142947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctctgtttttgtctctaatCctggaaacagagatttgata	7	8	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105142947	A	A	105142947	3	1	41	1	0	0	0	0	1	0	0	0	12941	855	30	3	1383	3	PUS7	7	105142947	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1980547	105142947	53995716	277	48249											
TMEM168	64418	broad.mit.edu	37	chr7	112423881	112423881	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggctattgtaatctgtccTgtgagtaaaatatactttat	7	5	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112423881	A	A	112423881	3	1	41	1	0	0	0	0	1	0	0	0	16206	1579	55	5	1109	5	TMEM168	7	112423881	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	7280934	112423881	46714782	278	48250											
KCND2	3751	broad.mit.edu	37	chr7	120178582	120178582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagggcctggtctctctgCctctgagggatggcccccag	15	13	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120178582	A	A	120178582	1	1	41	0	1	0	0	0	0	0	0	0	8089	754	26	3		3	KCND2	7	120178582	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7754701	120178582	38960081	279	48251											
TAS2R16	50833	broad.mit.edu	37	chr7	122635601	122635601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattctctgcccagcactgCaacaattaggctgctctgca	7	15	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122635601	A	A	122635601	3	1	41	1	0	0	0	0	1	0	0	0	15688	710	25	3	791	3	TAS2R16	7	122635601	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2457019	122635601	36503062	280	48252											
SND1	27044	broad.mit.edu	37	chr7	127729487	127729487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctatggacaggagctggGgcccaagtggttgttctctg	15	8	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127729487	T	T	127729487	1	4	41	0	1	0	0	0	0	0	0	0	14958	1247	43	2		2	SND1	7	127729487	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5093886	127729487	31409176	281	48253											
FLNC	2318	broad.mit.edu	37	chr7	128477515	128477515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctgttatgacctacctgTcccagttccccaaggccaag	7	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128477515	G	G	128477515	3	3	41	1	0	0	0	0	1	0	0	0	5993	1667	58	5	777	5	FLNC	7	128477515	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	748028	128477515	30661148	282	48254											
CPA4	51200	broad.mit.edu	37	chr7	129962469	129962469	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactgcagaggagacgtggCtggggctgaagaccatcatg	15	10	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129962469	G	G	129962469	3	3	41	1	0	0	0	0	1	0	0	0	3824	796	28	4	1261	4	CPA4	7	129962469	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1484954	129962469	29176194	283	48255											
CPA5	93979	broad.mit.edu	37	chr7	130002699	130002699	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagacccagtagggcctcCcatccctcctcactctttct	7	17	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130002699	T	T	130002699	1	4	41	0	1	0	0	0	0	0	0	0	3825	638	22	4		4	CPA5	7	130002699	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	40230	130002699	29135964	284	48256											
DENND2A	27147	broad.mit.edu	37	chr7	140259690	140259690	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaggcggatgatggtaagGatggcctctcccacctttcc	12	11	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140259690	T	T	140259690	1	4	41	0	1	0	0	0	0	0	0	0	4469	1189	41	3		3	DENND2A	7	140259690	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	10256991	140259690	18878973	285	48257											
BRAF	673	broad.mit.edu	37	chr7	140482873	140482873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttcctttctcgctgaggtCctggagatttctgtaaggct	10	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140482873	A	A	140482873	3	1	41	1	0	0	0	0	1	0	0	0	1505	855	30	3	1074	3	BRAF	7	140482873	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	223183	140482873	18655790	286	48258											
WEE2	494551	broad.mit.edu	37	chr7	141408508	141408508	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttctgtaggttcacagcGttcccttctgatagagcttt	9	10	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141408508	A	A	141408508	1	1	41	0	1	0	0	0	0	0	0	0	17472	1160	40	4		4	WEE2	7	141408508	5'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	925635	141408508	17730155	287	48259											
OR9A4	130075	broad.mit.edu	37	chr7	141618813	141618813	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaacacagtcatcatcatGattgtctgtgtggataaacg	10	7	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141618813	T	T	141618813	3	4	41	1	0	0	0	0	1	0	0	0	11343	1290	45	3	140	3	OR9A4	7	141618813	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	210305	141618813	17519850	288	48260											
MGAM	8972	broad.mit.edu	37	chr7	141736753	141736753	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcacagccgaggggacaCggtggccaggccccttttgc	14	14	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141736753	T	T	141736753	3	4	41	1	0	0	0	0	1	0	0	0	9634	536	19	4	2273	4	MGAM	7	141736753	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	117940	141736753	17401910	289	48261											
KCNH2	3757	broad.mit.edu	37	chr7	150646098	150646098	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgttcgacttgccaggccttGcatacaggttcagaggctcc	11	13	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150646098	C	C	150646098	3	2	41	1	0	0	0	0	1	0	0	0	8102	1319	46	4	1065	4	KCNH2	7	150646098	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8909345	150646098	8492565	290	48262											
UBE3C	9690	broad.mit.edu	37	chr7	157000045	157000045	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattagttcccaaactaagActaattttaaagtgactggt	6	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157000045	G	G	157000045	1	3	41	0	1	0	0	0	0	0	0	0	17007	290	10	5		5	UBE3C	7	157000045	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	6353947	157000045	2138618	291	48263											
PTPRN2	5799	broad.mit.edu	37	chr7	157691585	157691585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaggcacagaattagaaCctgcacgaggccccattttc	9	12	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157691585	A	A	157691585	1	1	41	0	1	0	0	0	0	0	0	0	12916	522	18	3		3	PTPRN2	7	157691585	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	691540	157691585	1447078	292	48264											
CSMD1	64478	broad.mit.edu	37	chr8	2820853	2820853	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaacttatgctggagccCcagcggaaatcacttccctc	8	14	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2820853	T	T	2820853	4	4	41	1	0	0	0	0	0	1	0	0	3978	624	22	4	1393	4	CSMD1	8	2820853	Nonsense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08		2820853	143543169	293	48265											
CSMD1	64478	broad.mit.edu	37	chr8	2824068	2824068	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcatagtaacgtctgagtCtaccatgatgtctgcttact	7	9	4	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2824068	A	A	2824068	1	1	41	0	1	0	0	0	0	0	0	0	3978	928	32	3		3	CSMD1	8	2824068	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3215	2824068	143539954	294	48266											
CSMD1	64478	broad.mit.edu	37	chr8	3165914	3165914	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctgccatgcatggcgTaccccgggttgcaactgtac	12	12	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3165914	C	C	3165914	3	2	41	1	0	0	0	0	1	0	0	0	3978	1638	57	5	7139	5	CSMD1	8	3165914	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	341846	3165914	143198108	295	48267											
MSRA	4482	broad.mit.edu	37	chr8	10281858	10281858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcagggagaagggcctgGggtggagcgggaatggggag	23	4	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10281858	T	T	10281858	1	4	41	0	1	0	0	0	0	0	0	0	9981	1247	43	2		2	MSRA	8	10281858	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	7115944	10281858	136082164	296	48268											
RP1L1	94137	broad.mit.edu	37	chr8	10488499	10488499	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccccctttgcaggtagagtCttgctcgagtggagtgaatg	14	9	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10488499	G	G	10488499	1	3	41	0	1	0	0	0	0	0	0	0	13644	928	32	4		4	RP1L1	8	10488499	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	206641	10488499	135875523	297	48269											
XKR6	286046	broad.mit.edu	37	chr8	10756253	10756253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagagctggaagatggaagCaaagagggcaaaagagatca	14	4	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10756253	A	A	10756253	3	1	41	1	0	0	0	0	1	0	0	0	17562	710	25	3	794	3	XKR6	8	10756253	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	267754	10756253	135607769	298	48270											
ADRA1A	148	broad.mit.edu	37	chr8	26716696	26716696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccttttctccaaaacaGcacgtcatatttaagaatgt	5	11	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26716696	T	T	26716696	1	4	41	0	1	0	0	0	0	0	0	0	334	986	34	3		3	ADRA1A	8	26716696	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	15960443	26716696	119647326	299	48271											
FZD3	7976	broad.mit.edu	37	chr8	28420374	28420374	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acctcatggcagcatgtcacGactaacagatcactccaggc	8	14	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28420374	C	C	28420374	3	2	41	1	0	0	0	0	1	0	0	0	6191	1058	37	4	1869	4	FZD3	8	28420374	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1703678	28420374	117943648	300	48272											
TEX15	56154	broad.mit.edu	37	chr8	30700988	30700988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatggtcctgttttcctGgatacgaatgaactttagga	10	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30700988	T	T	30700988	3	4	41	1	0	0	0	0	1	0	0	0	15901	1348	47	2	2839	2	TEX15	8	30700988	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2280614	30700988	115663034	301	48273											
NRG1	3084	broad.mit.edu	37	chr8	32011637	32011637	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggaagtttgtataaactaGagtgctcaagcagcaggcag	12	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32011637	T	T	32011637	1	4	41	0	1	0	0	0	0	0	0	0	10742	957	33	3		3	NRG1	8	32011637	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1310649	32011637	114352385	302	48274											
NRG1	3084	broad.mit.edu	37	chr8	32585408	32585408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggataatttaagattaaagGctgcttagaagggggaaaaa	12	2	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32585408	T	T	32585408	1	4	41	0	1	0	0	0	0	0	0	0	10742	1218	42	3		3	NRG1	8	32585408	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	573771	32585408	113778614	303	48275											
PROSC	11212	broad.mit.edu	37	chr8	37635546	37635546	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgatttttggagagcgggAttactcaaagaaacccaccc	9	11	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37635546	G	G	37635546	3	3	41	1	0	0	0	0	1	0	0	0	12665	333	12	5	782	5	PROSC	8	37635546	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	5050138	37635546	108728476	304	48276											
ADAM32	203102	broad.mit.edu	37	chr8	39128339	39128339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggactgattttaattcAtgaagttggcaagttttcta	8	4	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39128339	G	G	39128339	1	3	41	0	1	0	0	0	0	0	0	0	249	232	8	5		5	ADAM32	8	39128339	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1492793	39128339	107235683	305	48277											
ADAM18	8749	broad.mit.edu	37	chr8	39442717	39442717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcgccaccatgcagtccGggataagaacccgtgcttga	12	12	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39442717	T	T	39442717	1	4	41	0	1	0	0	0	0	0	0	0	239	1131	39	1		1	ADAM18	8	39442717	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	314378	39442717	106921305	306	48278											
RNF170	81790	broad.mit.edu	37	chr8	42729062	42729062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctactcctcaaataaataCatatacaatacctgttctgt	2	10	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42729062	A	A	42729062	1	1	41	0	1	0	0	0	0	0	0	0	13573	493	17	3		3	RNF170	8	42729062	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3286345	42729062	103634960	307	48279											
SNTG1	54212	broad.mit.edu	37	chr8	51617216	51617216	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgtgcagtctgagtctggGgaggacctgtacttctcagt	13	10	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51617216	A	A	51617216	2	1	41	1	0	0	0	0	0	0	0	1	14988	1219	43	4		4	SNTG1	8	51617216	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8888154	51617216	94746806	308	48280											
PXDNL	137902	broad.mit.edu	37	chr8	52321726	52321726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcgggctgtgctcagcgCaggcactgtgtggtccaagt	16	10	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52321726	A	A	52321726	3	1	41	1	0	0	0	0	1	0	0	0	12956	710	25	3	1961	3	PXDNL	8	52321726	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	704510	52321726	94042296	309	48281											
TOX	9760	broad.mit.edu	37	chr8	60031403	60031403	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgccgctcccctcccaggatCaagcagcaagaacacggtgg	11	16	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60031403	A	A	60031403	1	1	41	0	1	0	0	0	0	0	0	0	16501	841	29	3		3	TOX	8	60031403	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7709677	60031403	86332619	310	48282											
PRDM14	63978	broad.mit.edu	37	chr8	70978583	70978583	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggagctcttggttctgaTggatctctttgcagctctca	10	10	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70978583	C	C	70978583	3	2	41	1	0	0	0	0	1	0	0	0	12561	1464	51	5	661	5	PRDM14	8	70978583	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	10947180	70978583	75385439	311	48283											
NCOA2	10499	broad.mit.edu	37	chr8	71075093	71075093	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagacgtgatcttgcctaTtaagtaacagcaggcattat	9	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71075093	C	C	71075093	1	2	41	0	1	0	0	0	0	0	0	0	10324	1508	52	5		5	NCOA2	8	71075093	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	96510	71075093	75288929	312	48284											
CNBD1	168975	broad.mit.edu	37	chr8	88218364	88218364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctggttgaaaggcagcaCaggtaatagactaatgtggg	13	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88218364	A	A	88218364	3	1	41	1	0	0	0	0	1	0	0	0	3623	478	17	3	593	3	CNBD1	8	88218364	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	17143271	88218364	58145658	313	48285											
TMEM64	169200	broad.mit.edu	37	chr8	91637856	91637856	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtgactgctagaccttAgatagcacactaggctcttg	10	9	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91637856	G	G	91637856	1	3	41	0	1	0	0	0	0	0	0	0	16316	435	15	5		5	TMEM64	8	91637856	3'UTR	SNP	A	TCGA-17-Z008-01A-01W-0746-08	3419492	91637856	54726166	314	48286											
CDH17	1015	broad.mit.edu	37	chr8	95207035	95207035	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatatccagttataaatctaGtaaaatggtatcccaaaagg	7	6	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95207035	C	C	95207035	1	2	41	0	1	0	0	0	0	0	0	0	3132	1044	36	4		4	CDH17	8	95207035	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3569179	95207035	51156987	315	48287											
UQCRB	7381	broad.mit.edu	37	chr8	97244118	97244118	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctcaggaagtcttcttaTggcttcttttacatcttcat	6	9	6	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97244118	C	C	97244118	3	2	41	1	0	0	0	0	1	0	0	0	17144	1464	51	5	201	5	UQCRB	8	97244118	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2037083	97244118	49119904	316	48288											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457470	110457470	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaacagttcagagcaaTagaggttaatgaaaacaaca	7	6	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110457470	C	C	110457470	3	2	41	1	0	0	0	0	1	0	0	0	12067	1406	49	5	5522	5	PKHD1L1	8	110457470	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	13213352	110457470	35906552	317	48289											
CSMD3	114788	broad.mit.edu	37	chr8	113516162	113516162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgggctattactgtctggtCcatcatagatatagaggaag	12	6	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113516162	A	A	113516162	3	1	41	1	0	0	0	0	1	0	0	0	3980	855	30	3	6351	3	CSMD3	8	113516162	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3058692	113516162	32847860	318	48290											
POU5F1B	5462	broad.mit.edu	37	chr8	128429051	128429051	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccagtgtcctttcctccgGccccagggccccattttggt	10	16	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128429051	A	A	128429051	3	1	41	1	0	0	0	0	1	0	0	0	12378	1203	42	4	942	4	POU5F1B	8	128429051	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	14912889	128429051	17934971	319	48291											
TMEM71	137835	broad.mit.edu	37	chr8	133726341	133726341	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttaaaatcattttaaagtGaccaaaattggaatgaaata	5	3	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133726341	T	T	133726341	1	4	41	0	1	0	0	0	0	0	0	0	16323	1305	45	3		3	TMEM71	8	133726341	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5297290	133726341	12637681	320	48292											
TG	7038	broad.mit.edu	37	chr8	134034483	134034483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcccctcactgcccctGctcctcctccagccaagcta	4	23	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134034483	T	T	134034483	1	4	41	0	1	0	0	0	0	0	0	0	15936	1334	46	3		3	TG	8	134034483	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	308142	134034483	12329539	321	48293											
COL22A1	169044	broad.mit.edu	37	chr8	139869536	139869536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagctctgcccccacagGccctacatctggggagaagc	10	17	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139869536	T	T	139869536	1	4	41	0	1	0	0	0	0	0	0	0	3713	1218	42	3		3	COL22A1	8	139869536	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5835053	139869536	6494486	322	48294											
NRBP2	340371	broad.mit.edu	37	chr8	144920987	144920987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcatggggaagggaccaCacaggtgagccaggcagggc	18	10	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144920987	A	A	144920987	1	1	41	0	1	0	0	0	0	0	0	0	10738	493	17	3		3	NRBP2	8	144920987	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5051451	144920987	1443035	323	48295											
ZNF16	7564	broad.mit.edu	37	chr8	146155946	146155946	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggcaagagcagtggcagTgagaagggagcctgtaaagg	18	5	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146155946	C	C	146155946	1	2	41	0	1	0	0	0	0	0	0	0	17864	1711	59	5		5	ZNF16	8	146155946	3'UTR	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1234959	146155946	208076	324	48296											
ZNF16	7564	broad.mit.edu	37	chr8	146155978	146155978	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtaaaggatgtttcaaagGagggtcccaggctatgtggc	14	7	1	0	rs3208	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146155978	A	A	146155978	1	1	41	0	1	0	0	0	0	0	0	0	17864	1189	41	4		4	ZNF16	8	146155978	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	32	146155978	208044	325	48297											
SMARCA2	6595	broad.mit.edu	37	chr9	2161702	2161702	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggccatcgaagacggcaAtttggaggaaatggaagagg	15	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2161702	G	G	2161702	3	3	41	1	0	0	0	0	1	0	0	0	14883	101	4	5	4104	5	SMARCA2	9	2161702	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08		2161702	139051729	326	48298											
RLN2	6019	broad.mit.edu	37	chr9	5300143	5300143	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtacaaccaacatggcaAcatttattagccaatgcact	6	10	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5300143	C	C	5300143	3	2	41	1	0	0	0	0	1	0	0	0	13503	41	2	5	48	5	RLN2	9	5300143	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	3138441	5300143	135913288	327	48299											
PTPRD	5789	broad.mit.edu	37	chr9	8492774	8492774	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttatttcctctgattttaCtataataaaagcctgctaga	4	7	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8492774	G	G	8492774	1	3	41	0	1	0	0	0	0	0	0	0	12907	580	20	4		4	PTPRD	9	8492774	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3192631	8492774	132720657	328	48300											
TEK	7010	broad.mit.edu	37	chr9	27203075	27203075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacatagggtcaagcaacCcagccttttctcatgaactg	7	12	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27203075	A	A	27203075	3	1	41	1	0	0	0	0	1	0	0	0	15873	623	22	2	2217	2	TEK	9	27203075	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	18710301	27203075	114010356	329	48301											
KIAA1539	80256	broad.mit.edu	37	chr9	35107405	35107405	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctttgggcccaggcagCaggtggctccagaagggtgt	17	10	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35107405	A	A	35107405	2	1	41	1	0	0	0	0	0	0	0	1	8312	697	25	3		3	KIAA1539	9	35107405	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7904330	35107405	106106026	330	48302											
FXN	2395	broad.mit.edu	37	chr9	71661353	71661353	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtcaaaaagcagagtgTctatttgatgaatttgagga	11	3	2	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71661353	A	A	71661353	3	1	41	1	0	0	0	0	1	0	0	0	6174	1667	58	5	224	5	FXN	9	71661353	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	36553948	71661353	69552078	331	48303											
SECISBP2	79048	broad.mit.edu	37	chr9	91965658	91965658	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagatccagtcaaggccaaGactaaacgtcgacttgtgtt	9	9	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91965658	A	A	91965658	2	1	41	1	0	0	0	0	0	0	0	1	14119	933	33	4		4	SECISBP2	9	91965658	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	20304305	91965658	49247773	332	48304											
TSTD2	158427	broad.mit.edu	37	chr9	100365004	100365004	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctggcggcactggggagtaGagcagagtttatactggtcc	16	8	0	2	rs150422288	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100365004	C	C	100365004	3	2	41	1	0	0	0	0	1	0	0	0	16801	942	33	4	256	4	TSTD2	9	100365004	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8399346	100365004	40848427	333	48305											
MURC	347273	broad.mit.edu	37	chr9	103348495	103348495	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgaacagtggctgaaggtgAggaatgtgccagggagatgg	18	6	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103348495	T	T	103348495	3	4	41	1	0	0	0	0	1	0	0	0	10081	304	11	5	863	5	MURC	9	103348495	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2983491	103348495	37864936	334	48306											
GRIN3A	116443	broad.mit.edu	37	chr9	104433196	104433196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggttttgtgtctctgggCctgctctggccatattccat	12	10	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104433196	A	A	104433196	3	1	41	1	0	0	0	0	1	0	0	0	6849	739	26	3	1877	3	GRIN3A	9	104433196	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1084701	104433196	36780235	335	48307											
WDR31	114987	broad.mit.edu	37	chr9	116091203	116091203	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttgaaccttttcaccacAtttccagttttccaattata	2	12	1	1	rs35305327	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116091203	C	C	116091203	3	2	41	1	0	0	0	0	1	0	0	0	17413	214	8	5	849	5	WDR31	9	116091203	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	11658007	116091203	25122228	336	48308											
OR1L4	254973	broad.mit.edu	37	chr9	125486939	125486939	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctacctgcaaatcatcgTcactgtgctcagaatcccct	5	16	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125486939	A	A	125486939	3	1	41	1	0	0	0	0	1	0	0	0	11059	1667	58	5	673	5	OR1L4	9	125486939	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	9395736	125486939	15726492	337	48309											
DENND1A	57706	broad.mit.edu	37	chr9	126389361	126389361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccctgagcctgtgcatGgtggggagagtgagggctca	16	10	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126389361	T	T	126389361	1	4	41	0	1	0	0	0	0	0	0	0	4466	1363	47	2		2	DENND1A	9	126389361	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	902422	126389361	14824070	338	48310											
PFKFB3	5209	broad.mit.edu	37	chr10	6268301	6268301	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccagctgcctgcccccGgaggtgcccacgcagctgcc	12	20	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6268301	T	T	6268301	2	4	41	1	0	0	0	0	0	0	0	1	11857	1103	39	1		1	PFKFB3	10	6268301	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08		6268301	129266446	339	48311											
SFMBT2	57713	broad.mit.edu	37	chr10	7262396	7262396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgaagccacattagcCgccccttcacactcacaacg	7	17	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7262396	A	A	7262396	3	1	41	1	0	0	0	0	1	0	0	0	14271	652	23	1	1421	1	SFMBT2	10	7262396	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	994095	7262396	128272351	340	48312											
RSU1	6251	broad.mit.edu	37	chr10	16806279	16806279	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaaaacataaaaagaaatTagaaatccatttctgtgcaa	4	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16806279	C	C	16806279	1	2	41	0	1	0	0	0	0	0	0	0	13827	1769	61	5		5	RSU1	10	16806279	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	9543883	16806279	118728468	341	48313											
SLC39A12	221074	broad.mit.edu	37	chr10	18270455	18270455	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagctgatgtgcacaatgTatgcaataataatagtaaat	8	4	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18270455	C	C	18270455	1	2	41	0	1	0	0	0	0	0	0	0	14729	1653	57	5		5	SLC39A12	10	18270455	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1464176	18270455	117264292	342	48314											
CACNB2	783	broad.mit.edu	37	chr10	18690715	18690715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggttttctagataggttGctgcaaaatgaattattttc	8	5	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18690715	T	T	18690715	1	4	41	0	1	0	0	0	0	0	0	0	2579	1334	46	3		3	CACNB2	10	18690715	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	420260	18690715	116844032	343	48315											
NEBL	10529	broad.mit.edu	37	chr10	21108438	21108438	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtagttttgctctttaTactggagctgagagacaagg	11	7	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21108438	C	C	21108438	3	2	41	1	0	0	0	0	1	0	0	0	10398	1406	49	5	1110	5	NEBL	10	21108438	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2417723	21108438	114426309	344	48316											
ARMC3	219681	broad.mit.edu	37	chr10	23287196	23287196	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccatgcaggagcccctgcGcctgaacatacagaatcacg	11	14	1	2	rs140763346	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23287196	C	C	23287196	3	2	41	1	0	0	0	0	1	0	0	0	956	1087	38	4	1333	4	ARMC3	10	23287196	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2178758	23287196	112247551	345	48317											
BAMBI	25805	broad.mit.edu	37	chr10	28970176	28970176	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtttgaggtggtttctcAttgttttcaggtgaaattcg	12	4	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28970176	C	C	28970176	1	2	41	0	1	0	0	0	0	0	0	0	1311	232	8	5		5	BAMBI	10	28970176	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	5682980	28970176	106564571	346	48318											
CUL2	8453	broad.mit.edu	37	chr10	35351869	35351869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcaacatatttatatcaCgtatgtatcattgcttacct	3	9	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35351869	A	A	35351869	1	1	41	0	1	0	0	0	0	0	0	0	4088	551	19	3		3	CUL2	10	35351869	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6381693	35351869	100182878	347	48319											
ALOX5	240	broad.mit.edu	37	chr10	45937038	45937038	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcctgatgtctccagcccGtgccattcagccaggagcac	9	17	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45937038	A	A	45937038	1	1	41	0	1	0	0	0	0	0	0	0	540	1160	40	4		4	ALOX5	10	45937038	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	10585169	45937038	89597709	348	48320											
ANXA8L2	244	broad.mit.edu	37	chr10	47756106	47756106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcacaggtgaggctgcgccCagccggccatgtggccccac	14	17	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47756106	A	A	47756106	1	1	41	0	1	0	0	0	0	0	0	0	726	609	21	2		2	ANXA8L2	10	47756106	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1819068	47756106	87778641	349	48321											
C10orf53	282966	broad.mit.edu	37	chr10	50916689	50916689	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggacagattgtgggaaaGgggttcatttcacaaaagga	13	5	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50916689	T	T	50916689	1	4	41	0	1	0	0	0	0	0	0	0	1617	1015	35	2		2	C10orf53	10	50916689	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3160583	50916689	84618058	350	48322											
SGMS1	259230	broad.mit.edu	37	chr10	52371082	52371082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactactgtggacacacgcCaagggtcttcacaccacgac	9	14	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52371082	A	A	52371082	1	1	41	0	1	0	0	0	0	0	0	0	14327	609	21	2		2	SGMS1	10	52371082	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1454393	52371082	83163665	351	48323											
PCDH15	65217	broad.mit.edu	37	chr10	56106161	56106161	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactgaataacatactctatCtgtccatttggtccatcatc	4	11	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56106161	T	T	56106161	2	4	41	1	0	0	0	0	0	0	0	1	11605	912	32	4		4	PCDH15	10	56106161	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3735079	56106161	79428586	352	48324											
HKDC1	80201	broad.mit.edu	37	chr10	71008190	71008190	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcttcaggtacccaaaaCgcctgcacaaggtggtgagg	12	12	1	1	rs148832840	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71008190	T	T	71008190	3	4	41	1	0	0	0	0	1	0	0	0	7260	536	19	4	1314	4	HKDC1	10	71008190	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	14902029	71008190	64526557	353	48325											
AGAP5	729092	broad.mit.edu	37	chr10	75434452	75434452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagcgctgtgttcccgtGggcatctcgggccatgacgt	15	12	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75434452	T	T	75434452	3	4	41	1	0	0	0	0	1	0	0	0	371	1348	47	2	98	2	AGAP5	10	75434452	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4426262	75434452	60100295	354	48326											
KCNMA1	3778	broad.mit.edu	37	chr10	78674528	78674528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagatcagttttcccttccGgtaatctgccatatttctcc	5	12	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78674528	T	T	78674528	1	4	41	0	1	0	0	0	0	0	0	0	8143	1131	39	1		1	KCNMA1	10	78674528	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3240076	78674528	56860219	355	48327											
DLG5	9231	broad.mit.edu	37	chr10	79579535	79579535	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcatttcccagttctctgGacctcagggctgaaaacaca	8	13	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79579535	A	A	79579535	1	1	41	0	1	0	0	0	0	0	0	0	4598	1189	41	4		4	DLG5	10	79579535	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	905007	79579535	55955212	356	48328											
BMPR1A	657	broad.mit.edu	37	chr10	88614985	88614985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagttttttaaccagagagGcttcaggtttcagacacaca	8	8	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88614985	T	T	88614985	1	4	41	0	1	0	0	0	0	0	0	0	1475	1218	42	3		3	BMPR1A	10	88614985	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	9035450	88614985	46919762	357	48329											
EXOC6	54536	broad.mit.edu	37	chr10	94688096	94688096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctgattttattttagGgtgacgaggaaacatttgaa	10	5	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94688096	T	T	94688096	3	4	41	1	0	0	0	0	1	0	0	0	5350	1246	43	2	1013	2	EXOC6	10	94688096	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	6073111	94688096	40846651	358	48330											
SORBS1	10580	broad.mit.edu	37	chr10	97078177	97078177	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtatatagctatataatgcTtgatagctaaatctatacat	6	5	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97078177	A	A	97078177	3	1	41	1	0	0	0	0	1	0	0	0	15041	1606	56	5	175	5	SORBS1	10	97078177	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2390081	97078177	38456570	359	48331											
PKD2L1	9033	broad.mit.edu	37	chr10	102054707	102054707	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggacacacacatgcacttGatgaaagtgctaaagttttc	8	9	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102054707	A	A	102054707	2	1	41	1	0	0	0	0	0	0	0	1	12062	1280	45	4		4	PKD2L1	10	102054707	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4976530	102054707	33480040	360	48332											
HPS6	79803	broad.mit.edu	37	chr10	103827022	103827022	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgggccgggctggggggcAgggggcccaggactgcccct	22	13	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103827022	C	C	103827022	2	2	41	1	0	0	0	0	0	0	0	1	7410	175	7	5		5	HPS6	10	103827022	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1772315	103827022	31707725	361	48333											
SORCS3	22986	broad.mit.edu	37	chr10	106865069	106865069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattaccttgttgattccCccatgaagtagagttttgta	7	7	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106865069	A	A	106865069	1	1	41	0	1	0	0	0	0	0	0	0	15046	638	22	2		2	SORCS3	10	106865069	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3038047	106865069	28669678	362	48334											
SORCS3	22986	broad.mit.edu	37	chr10	106938000	106938000	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctactttcattgaggccttgGatttttcccagggaacccta	8	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106938000	A	A	106938000	1	1	41	0	1	0	0	0	0	0	0	0	15046	1189	41	4		4	SORCS3	10	106938000	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	72931	106938000	28596747	363	48335											
AFAP1L2	84632	broad.mit.edu	37	chr10	116068192	116068192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaccacatgatgttacCgtctttggtttctgggacct	8	12	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116068192	T	T	116068192	3	4	41	1	0	0	0	0	1	0	0	0	355	666	23	4	1533	4	AFAP1L2	10	116068192	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	9130192	116068192	19466555	364	48336											
PNLIP	5406	broad.mit.edu	37	chr10	118307843	118307843	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattggctactataggaaacTgacatgaaacacttttctgt	7	7	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118307843	A	A	118307843	1	1	41	0	1	0	0	0	0	0	0	0	12244	1595	55	5		5	PNLIP	10	118307843	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2239651	118307843	17226904	365	48337											
KCNK18	338567	broad.mit.edu	37	chr10	118969197	118969197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctcctctccaagtggtGccccaaatctctcttcaaga	5	18	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118969197	T	T	118969197	3	4	41	1	0	0	0	0	1	0	0	0	8135	1319	46	3	552	3	KCNK18	10	118969197	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	661354	118969197	16565550	366	48338											
NSMCE4A	54780	broad.mit.edu	37	chr10	123724810	123724810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaacaaacctgggcaggCattgccctctcctcttgtat	7	12	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123724810	A	A	123724810	3	1	41	1	0	0	0	0	1	0	0	0	10772	710	25	3	437	3	NSMCE4A	10	123724810	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4755613	123724810	11809937	367	48339											
MKI67	4288	broad.mit.edu	37	chr10	129910277	129910277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgtgtttgttttgcacCaagttttactacatctgccc	7	9	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129910277	A	A	129910277	3	1	41	1	0	0	0	0	1	0	0	0	9691	594	21	2	7792	2	MKI67	10	129910277	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6185467	129910277	5624470	368	48340											
MKI67	4288	broad.mit.edu	37	chr10	129911753	129911753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactttcttttggttggggCttctccccttttgagaggcg	12	9	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129911753	A	A	129911753	3	1	41	1	0	0	0	0	1	0	0	0	9691	797	28	3	8208	3	MKI67	10	129911753	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1476	129911753	5622994	369	48341											
JAKMIP3	282973	broad.mit.edu	37	chr10	133967360	133967360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttcaccgaggttctgcGgctcggtgctgcaggtggga	15	12	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133967360	T	T	133967360	1	4	41	0	1	0	0	0	0	0	0	0	8012	1131	39	1		1	JAKMIP3	10	133967360	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4055607	133967360	1567387	370	48342											
OR51D1	390038	broad.mit.edu	37	chr11	4661750	4661750	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgttttggagctgtcctctCggagggcagcactcaaggct	13	11	2	0	rs138670452		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4661750	T	T	4661750	3	4	41	1	0	0	0	0	1	0	0	0	11187	875	31	4	732	4	OR51D1	11	4661750	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08		4661750	130344766	371	48343											
OR51E1	143503	broad.mit.edu	37	chr11	4674587	4674587	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactctccgctgcccgtcatCttggccaatatctatctgct	7	15	5	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4674587	A	A	4674587	2	1	41	1	0	0	0	0	0	0	0	1	11188	903	32	3		3	OR51E1	11	4674587	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	12837	4674587	130331929	372	48344											
OR51A7	119687	broad.mit.edu	37	chr11	4928962	4928962	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctaattatgtctttggaCcgctttcttgccattcacaa	5	11	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4928962	T	T	4928962	2	4	41	1	0	0	0	0	0	0	0	1	11182	506	18	4		4	OR51A7	11	4928962	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	254375	4928962	130077554	373	48345											
OR51V1	283111	broad.mit.edu	37	chr11	5221254	5221254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttaagaatcaggatgtagGagaaaaggatgagtatagca	12	3	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5221254	T	T	5221254	3	4	41	1	0	0	0	0	1	0	0	0	11201	1174	41	3	291	3	OR51V1	11	5221254	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	292292	5221254	129785262	374	48346											
HBD	3045	broad.mit.edu	37	chr11	5254298	5254298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaagttgcgggccagcaCacacaccagcacattgccca	9	16	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5254298	A	A	5254298	3	1	41	1	0	0	0	0	1	0	0	0	7045	478	17	3	107	3	HBD	11	5254298	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	33044	5254298	129752218	375	48347											
TRIM5	85363	broad.mit.edu	37	chr11	5841450	5841450	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgtacatggcacttgagGttcactttgtccaaaccagt	9	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5841450	T	T	5841450	1	4	41	0	1	0	0	0	0	0	0	0	16650	1276	44	3		3	TRIM5	11	5841450	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	587152	5841450	129165066	376	48348											
TRIM3	10612	broad.mit.edu	37	chr11	6479487	6479487	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccggcatactggacaggaTagcgtcaggctctgggcagg	16	10	2	0	rs41275192	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6479487	C	C	6479487	2	2	41	1	0	0	0	0	0	0	0	1	16628	1393	49	5		5	TRIM3	11	6479487	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	638037	6479487	128527029	377	48349											
ZNF215	7762	broad.mit.edu	37	chr11	6964854	6964854	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggataatggagaaagaaataCcaaggaagactatttttggt	11	3	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6964854	T	T	6964854	3	4	41	1	0	0	0	0	1	0	0	0	17897	507	18	4	708	4	ZNF215	11	6964854	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	485367	6964854	128041662	378	48350											
SCUBE2	57758	broad.mit.edu	37	chr11	9096220	9096220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcaatgccccacctcaCccagcagctcaggggccctg	9	17	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9096220	A	A	9096220	1	1	41	0	1	0	0	0	0	0	0	0	14058	522	18	3		3	SCUBE2	11	9096220	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2131366	9096220	125910296	379	48351											
INSC	387755	broad.mit.edu	37	chr11	15222402	15222402	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcactcttcaaggtttgCcggcaggacagtttccggtg	13	10	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15222402	A	A	15222402	4	1	41	1	0	0	0	0	0	1	0	0	7834	747	26	3	893	3	INSC	11	15222402	Nonsense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6126182	15222402	119784114	380	48352											
NELL1	4745	broad.mit.edu	37	chr11	21581904	21581904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggaccttgaaagaagaCaggtgttctgtctgctcctg	13	8	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21581904	A	A	21581904	3	1	41	1	0	0	0	0	1	0	0	0	10428	477	17	3	2022	3	NELL1	11	21581904	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6359502	21581904	113424612	381	48353											
PAX6	5080	broad.mit.edu	37	chr11	31822172	31822172	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctgagaggaaatggttgGgagagtaggggacaggcaaa	18	5	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31822172	A	A	31822172	1	1	41	0	1	0	0	0	0	0	0	0	11577	1247	43	4		4	PAX6	11	31822172	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	10240268	31822172	103184344	382	48354											
WT1	7490	broad.mit.edu	37	chr11	32413657	32413657	+	Intron	DEL	C	-	-													cggccctaacaatgtgggcaCagtgaggcccacaaggctga							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32413657	-	-	32413657	6	5	41	0	1	1	0	1	0	0	0	0	17535	493	17	0		0	WT1	11	32413657	Intron	DEL	C	TCGA-17-Z008-01A-01W-0746-08	591485	32413657	102592859	383	48355											
PRDM11	56981	broad.mit.edu	37	chr11	45117276	45117276	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttaacccttctgctttctGctctggaatgcagattatga	7	9	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45117276	C	C	45117276	1	2	41	0	1	0	0	0	0	0	0	0	12558	1334	46	4		4	PRDM11	11	45117276	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	12703619	45117276	89889240	384	48356											
OR4C13	283092	broad.mit.edu	37	chr11	49974626	49974626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcctggtctcctgcgtgGtcatactgtactccttaaag	9	12	2	0	rs150606357	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49974626	A	A	49974626	3	1	41	1	0	0	0	0	1	0	0	0	11141	1261	44	4	654	4	OR4C13	11	49974626	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4857350	49974626	85031890	385	48357											
OR5M3	219482	broad.mit.edu	37	chr11	56237803	56237803	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgactgaggaaaaagtaCatggggttgttaagctgagg	15	3	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56237803	T	T	56237803	3	4	41	1	0	0	0	0	1	0	0	0	11269	478	17	4	754	4	OR5M3	11	56237803	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6263177	56237803	78768713	386	48358											
OR1S2	219958	broad.mit.edu	37	chr11	57971642	57971642	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgatctgaagaaaggaacaCaaagtcttcatacacctaca	6	10	3	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57971642	G	G	57971642	3	3	41	1	0	0	0	0	1	0	0	0	11067	477	17	4	968	4	OR1S2	11	57971642	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1733839	57971642	77034874	387	48359											
GLYATL1	92292	broad.mit.edu	37	chr11	58722338	58722338	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttttgaaaaattgtgagatCgtaaactggaaacagagact	10	4	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58722338	A	A	58722338	2	1	41	1	0	0	0	0	0	0	0	1	6544	874	31	3		3	GLYATL1	11	58722338	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	750696	58722338	76284178	388	48360											
MS4A4A	51338	broad.mit.edu	37	chr11	60075691	60075691	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaaatgctccagaaatctAtgctgactgtgacacaagag	9	9	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60075691	C	C	60075691	1	2	41	0	1	0	0	0	0	0	0	0	9956	464	16	5		5	MS4A4A	11	60075691	3'UTR	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1353353	60075691	74930825	389	48361											
MS4A8B	83661	broad.mit.edu	37	chr11	60471565	60471565	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccgcaaggtgacatcccctCaaaagggatgtattttcttt	8	11	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60471565	A	A	60471565	1	1	41	0	1	0	0	0	0	0	0	0	9961	841	29	3		3	MS4A8B	11	60471565	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	395874	60471565	74534951	390	48362											
MS4A8B	83661	broad.mit.edu	37	chr11	60482421	60482421	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccacaaagagtccatggCagggccccagtgagaggtca	13	11	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60482421	T	T	60482421	1	4	41	0	1	0	0	0	0	0	0	0	9961	725	25	4		4	MS4A8B	11	60482421	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	10856	60482421	74524095	391	48363											
DDB1	1642	broad.mit.edu	37	chr11	61079233	61079233	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcccctgctctaaggtcatCtttctttgtccactgccctt	7	15	4	0	rs147201675	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61079233	G	G	61079233	1	3	41	0	1	0	0	0	0	0	0	0	4356	928	32	4		4	DDB1	11	61079233	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	596812	61079233	73927283	392	48364											
MAP3K11	4296	broad.mit.edu	37	chr11	65374054	65374054	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggcagggagcctggggGcggggaggaagaggggatag	23	5	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65374054	A	A	65374054	1	1	41	0	1	0	0	0	0	0	0	0	9337	1218	42	4		4	MAP3K11	11	65374054	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4294821	65374054	69632462	393	48365											
MTL5	9633	broad.mit.edu	37	chr11	68506246	68506246	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgttgactaccgatggtaagGctccctcaagctgttcaaag	10	11	2	1	rs145548910	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68506246	C	C	68506246	3	2	41	1	0	0	0	0	1	0	0	0	10030	1203	42	4	711	4	MTL5	11	68506246	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3132192	68506246	66500270	394	48366											
FADD	8772	broad.mit.edu	37	chr11	70052155	70052155	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccactcagcacttggcGtctgtgctgaaaagccctag	10	13	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70052155	A	A	70052155	1	1	41	0	1	0	0	0	0	0	0	0	5410	1160	40	4		4	FADD	11	70052155	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1545909	70052155	64954361	395	48367											
RPS3	6188	broad.mit.edu	37	chr11	75112574	75112574	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaattttagtttttgtcaAtgaaaattatatgctttgtg	6	2	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75112574	G	G	75112574	1	3	41	0	1	0	0	0	0	0	0	0	13754	116	4	5		5	RPS3	11	75112574	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	5060419	75112574	59893942	396	48368											
DLG2	1740	broad.mit.edu	37	chr11	84245670	84245670	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggacattttctatttgagaGaggttcttttctgatacatg	9	5	3	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84245670	A	A	84245670	2	1	41	1	0	0	0	0	0	0	0	1	4595	929	33	4		4	DLG2	11	84245670	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	9133096	84245670	50760846	397	48369											
FAT3	120114	broad.mit.edu	37	chr11	92430609	92430609	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcaggcagaacattttctgGaggtaagcgcatagagggaa	14	6	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92430609	T	T	92430609	4	4	41	1	0	0	0	0	0	1	0	0	5748	1175	41	3	3677	3	FAT3	11	92430609	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8184939	92430609	42575907	398	48370											
PGR	5241	broad.mit.edu	37	chr11	100920650	100920653	+	Intron	DEL	ACTC	-	-													tcttgcattaagttacttgaActcactcacttgtattaaga							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100920653	-	-	100920650	6	5	41	0	1	1	0	1	0	0	0	0	11900	58	2	0		0	PGR	11	100920650	Intron	DEL	ACTC	TCGA-17-Z008-01A-01W-0746-08	8490041	100920650	34085866	399	48371											
GUCY1A2	2977	broad.mit.edu	37	chr11	106698651	106698651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtttactgaatatcgcGgcggaacagcgagactctgg	14	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106698651	T	T	106698651	1	4	41	0	1	0	0	0	0	0	0	0	6958	1131	39	1		1	GUCY1A2	11	106698651	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5778001	106698651	28307865	400	48372											
DIXDC1	85458	broad.mit.edu	37	chr11	111853179	111853179	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatatttagaaaaagaaatgGaggaagcaaagaaaatgata	9	1	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111853179	T	T	111853179	4	4	41	1	0	0	0	0	0	1	0	0	4581	1183	41	3	938	3	DIXDC1	11	111853179	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5154528	111853179	23153337	401	48373											
NCAM1	4684	broad.mit.edu	37	chr11	113085193	113085193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccccattccctccatcaCctggaggacttctacccgga	7	17	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113085193	A	A	113085193	3	1	41	1	0	0	0	0	1	0	0	0	10297	507	18	3	1050	3	NCAM1	11	113085193	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1232014	113085193	21921323	402	48374											
MFRP	83552	broad.mit.edu	37	chr11	119210102	119210102	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatccggagaaggtgctgTctgtcttgatgctggcatag	14	7	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119210102	C	C	119210102	1	2	41	0	1	0	0	0	0	0	0	0	9619	1667	58	5		5	MFRP	11	119210102	3'UTR	SNP	T	TCGA-17-Z008-01A-01W-0746-08	6124909	119210102	15796414	403	48375											
GRIK4	2900	broad.mit.edu	37	chr11	120685307	120685307	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacagggtgcgactccatctCaataaataaatacataaata	6	8	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120685307	T	T	120685307	1	4	41	0	1	0	0	0	0	0	0	0	6842	841	29	4		4	GRIK4	11	120685307	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1475205	120685307	14321209	404	48376											
OR8D2	283160	broad.mit.edu	37	chr11	124189594	124189594	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgtatgagacctacagaatGacaacactgacatgcgggta	10	10	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124189594	A	A	124189594	3	1	41	1	0	0	0	0	1	0	0	0	11326	1294	45	4	438	4	OR8D2	11	124189594	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3504287	124189594	10816922	405	48377											
NTM	50863	broad.mit.edu	37	chr11	131459579	131459579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccaccccttcctcgtcaCttttgttgaaaaatgttcct	4	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131459579	T	T	131459579	1	4	41	0	1	0	0	0	0	0	0	0	10794	580	20	4		4	NTM	11	131459579	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7269985	131459579	3546937	406	48378											
NTM	50863	broad.mit.edu	37	chr11	131781323	131781323	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttcctgtgctcgcccgGggggcgtgtgccgtgcggct	16	15	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131781323	T	T	131781323	1	4	41	0	1	0	0	0	0	0	0	0	10794	1247	43	2		2	NTM	11	131781323	5'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	321744	131781323	3225193	407	48379											
NTM	50863	broad.mit.edu	37	chr11	131865427	131865427	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtcagccaggcaaagttgTaggggagcagggcatgtgcc	17	8	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131865427	A	A	131865427	1	1	41	0	1	0	0	0	0	0	0	0	10794	1653	57	5		5	NTM	11	131865427	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	84104	131865427	3141089	408	48380											
IQSEC3	440073	broad.mit.edu	37	chr12	178465	178465	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacatagccatagccttcaGagtggcctacggaacccaaa	9	12	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178465	T	T	178465	1	4	41	0	1	0	0	0	0	0	0	0	7889	957	33	3		3	IQSEC3	12	178465	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08		178465	133673430	409	48381											
ERC1	23085	broad.mit.edu	37	chr12	1137369	1137369	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgggggacgtctgccttaCggtgttcggatgactgctat	14	9	2	1	rs138791726	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1137369	T	T	1137369	2	4	41	1	0	0	0	0	0	0	0	1	5252	547	19	4		4	ERC1	12	1137369	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	958904	1137369	132714526	410	48382											
CACNA1C	775	broad.mit.edu	37	chr12	2702528	2702528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgtgcagcaatggtgGggaaggtggggtcctgctct	18	7	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2702528	T	T	2702528	1	4	41	0	1	0	0	0	0	0	0	0	2566	1247	43	2		2	CACNA1C	12	2702528	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1565159	2702528	131149367	411	48383											
ITFG2	55846	broad.mit.edu	37	chr12	2927446	2927446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgatcagcgacatcggtGggcatgcctacctttgcagg	13	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2927446	T	T	2927446	1	4	41	0	1	0	0	0	0	0	0	0	7940	1363	47	2		2	ITFG2	12	2927446	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	224918	2927446	130924449	412	48384											
FOXM1	2305	broad.mit.edu	37	chr12	2968006	2968006	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctggcttggggacgtctAtatctgagggagaagagttg	16	6	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2968006	G	G	2968006	3	3	41	1	0	0	0	0	1	0	0	0	6078	449	16	5	205	5	FOXM1	12	2968006	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	40560	2968006	130883889	413	48385											
DYRK4	8798	broad.mit.edu	37	chr12	4711832	4711832	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtaacacctgctgagGgtcattttctgtactatttg	10	8	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4711832	C	C	4711832	1	2	41	0	1	0	0	0	0	0	0	0	4898	1247	43	4		4	DYRK4	12	4711832	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1743826	4711832	129140063	414	48386											
VWF	7450	broad.mit.edu	37	chr12	6121126	6121126	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagatgtacagatggacccGcaaaaacaagataatagtaa	8	7	0	3	rs148695066	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6121126	A	A	6121126	1	1	41	0	1	0	0	0	0	0	0	0	17373	1102	38	4		4	VWF	12	6121126	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1409294	6121126	127730769	415	48387											
IFFO1	25900	broad.mit.edu	37	chr12	6659777	6659777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagccgtggacgggaggCcaacaggccaacactagaag	16	10	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6659777	A	A	6659777	1	1	41	0	1	0	0	0	0	0	0	0	7580	754	26	3		3	IFFO1	12	6659777	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	538651	6659777	127192118	416	48388											
CD4	920	broad.mit.edu	37	chr12	6923266	6923266	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgccagaggtgccctgtctCcagggcgcctcagtcccccc	11	18	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6923266	G	G	6923266	1	3	41	0	1	0	0	0	0	0	0	0	3044	870	30	4		4	CD4	12	6923266	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	263489	6923266	126928629	417	48389											
CLEC4E	26253	broad.mit.edu	37	chr12	8688635	8688635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatggacctgatctattgCaggtaacagaaggaggtttc	11	6	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8688635	A	A	8688635	1	1	41	0	1	0	0	0	0	0	0	0	3547	725	25	3		3	CLEC4E	12	8688635	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1765369	8688635	125163260	418	48390											
AICDA	57379	broad.mit.edu	37	chr12	8758007	8758007	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggtgaaccaggtgacGcggtagcagcggccagggtc	18	10	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8758007	T	T	8758007	2	4	41	1	0	0	0	0	0	0	0	1	422	1074	38	3		3	AICDA	12	8758007	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	69372	8758007	125093888	419	48391											
PRB1	5542	broad.mit.edu	37	chr12	11508046	11508046	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgtgtgtttatcgccatCatcgatgctgatgcactgta	10	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11508046	A	A	11508046	1	1	41	0	1	0	0	0	0	0	0	0	12548	841	29	3		3	PRB1	12	11508046	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2750039	11508046	122343849	420	48392											
PLCZ1	89869	broad.mit.edu	37	chr12	18854458	18854458	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcttgaaaagcattaCtccaggtaacttttttaccc	4	10	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18854458	T	T	18854458	3	4	41	1	0	0	0	0	1	0	0	0	12139	565	20	4	860	4	PLCZ1	12	18854458	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7346412	18854458	114997437	421	48393											
PDE3A	5139	broad.mit.edu	37	chr12	20769151	20769151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgggtaatgaagtcaaGtctctttcctagcgcctgag	10	9	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20769151	T	T	20769151	1	4	41	0	1	0	0	0	0	0	0	0	11731	1044	36	3		3	PDE3A	12	20769151	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1914693	20769151	113082744	422	48394											
PDE3A	5139	broad.mit.edu	37	chr12	20769264	20769264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaccttggagcctgcacCagtacggagagaccgcagca	11	15	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20769264	A	A	20769264	3	1	41	1	0	0	0	0	1	0	0	0	11731	594	21	2	1384	2	PDE3A	12	20769264	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	113	20769264	113082631	423	48395											
SLCO1C1	53919	broad.mit.edu	37	chr12	20874977	20874977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaaaaataatggaaatgGcaagaggtaagtcaaattct	9	4	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20874977	T	T	20874977	3	4	41	1	0	0	0	0	1	0	0	0	14839	1203	42	3	1041	3	SLCO1C1	12	20874977	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	105713	20874977	112976918	424	48396											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	41	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4523308	25398285	108453610	425	48397											
TMTC1	83857	broad.mit.edu	37	chr12	29908755	29908756	+	Missense_Mutation	DNP	CA	AG	AG													gtccccagaaacaaactgagCagcaagaagaagggagacac							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	29908756	AG	AG	29908755	3	1	41	1	0	0	0	0	1	0	0	0	16383	697	25	3	2090	3	TMTC1	12	29908755	Missense_Mutation	DNP	CA	TCGA-17-Z008-01A-01W-0746-08	4510470	29908755	103943140	426	48398											
TMTC1	83857	broad.mit.edu	37	chr12	29908795	29908795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtggaagggaaacttcccCcaacacagccctgatccaga	9	15	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29908795	A	A	29908795	3	1	41	1	0	0	0	0	1	0	0	0	16383	623	22	2	2130	2	TMTC1	12	29908795	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	40	29908795	103943100	427	48399											
FAM60A	58516	broad.mit.edu	37	chr12	31435657	31435657	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacctcagtcaccactcctGagtggagatgggcagaggct	12	11	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31435657	C	C	31435657	3	2	41	1	0	0	0	0	1	0	0	0	5646	1299	45	4	14	4	FAM60A	12	31435657	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1526862	31435657	102416238	428	48400											
BICD1	636	broad.mit.edu	37	chr12	32480351	32480351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggattaagttcatcattgGtgctgccttgaggtgattca	11	6	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32480351	T	T	32480351	1	4	41	0	1	0	0	0	0	0	0	0	1434	1276	44	3		3	BICD1	12	32480351	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1044694	32480351	101371544	429	48401											
ABCD2	225	broad.mit.edu	37	chr12	39967449	39967449	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctctactgtgaaaaattTagcaaagttattttttgaga	6	6	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39967449	C	C	39967449	1	2	41	0	1	0	0	0	0	0	0	0	61	1769	61	5		5	ABCD2	12	39967449	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	7487098	39967449	93884446	430	48402											
DDX23	9416	broad.mit.edu	37	chr12	49226245	49226245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagaccttctgttccaCacgctcatggggcttgcctg	12	12	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49226245	A	A	49226245	3	1	41	1	0	0	0	0	1	0	0	0	4383	478	17	3	563	3	DDX23	12	49226245	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	9258796	49226245	84625650	431	48403											
KRT7	3855	broad.mit.edu	37	chr12	52639315	52639315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcggggcaagcaggatatGgcacggcagctgcgtgagta	17	9	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52639315	T	T	52639315	3	4	41	1	0	0	0	0	1	0	0	0	8554	1348	47	2	1130	2	KRT7	12	52639315	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3413070	52639315	81212580	432	48404											
KRT6B	3854	broad.mit.edu	37	chr12	52841155	52841155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacccaggcctaagccaCtgccgacaccgctggcaccg	9	20	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52841155	A	A	52841155	3	1	41	1	0	0	0	0	1	0	0	0	8552	565	20	3	184	3	KRT6B	12	52841155	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	201840	52841155	81010740	433	48405											
KRT8	3856	broad.mit.edu	37	chr12	53293728	53293728	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcccggctgcggttgGcaatatcctcgtactgtgcc	11	15	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53293728	A	A	53293728	3	1	41	1	0	0	0	0	1	0	0	0	8564	1203	42	4	655	4	KRT8	12	53293728	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	452573	53293728	80558167	434	48406											
NCKAP1L	3071	broad.mit.edu	37	chr12	54902457	54902457	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaggcaaaataaggtacActtttacatattcagttgac	6	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54902457	G	G	54902457	1	3	41	0	1	0	0	0	0	0	0	0	10317	174	6	5		5	NCKAP1L	12	54902457	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1608729	54902457	78949438	435	48407											
MMP19	4327	broad.mit.edu	37	chr12	56231768	56231768	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacacatagtcccccttgaAagcataggtcttcccacggg	8	15	1	1	rs141023737		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56231768	G	G	56231768	3	3	41	1	0	0	0	0	1	0	0	0	9750	14	1	5	619	5	MMP19	12	56231768	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1329311	56231768	77620127	436	48408											
ANKRD52	283373	broad.mit.edu	37	chr12	56637983	56637983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagggtgcagggcaggagTtggggagagtaacaggagga	22	4	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56637983	C	C	56637983	1	2	41	0	1	0	0	0	0	0	0	0	678	1740	60	5		5	ANKRD52	12	56637983	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	406215	56637983	77213912	437	48409											
R3HDM2	22864	broad.mit.edu	37	chr12	57648586	57648586	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggctcgctccaggatcctCaggtcatagttctttttggc	10	12	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57648586	A	A	57648586	2	1	41	1	0	0	0	0	0	0	0	1	12996	813	29	3		3	R3HDM2	12	57648586	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1010603	57648586	76203309	438	48410											
PPM1H	57460	broad.mit.edu	37	chr12	63087827	63087827	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggtttgcactcaattagtGacctgctgccctgacaccga	9	12	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63087827	A	A	63087827	1	1	41	0	1	0	0	0	0	0	0	0	12442	1305	45	4		4	PPM1H	12	63087827	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5439241	63087827	70764068	439	48411											
PTPRB	5787	broad.mit.edu	37	chr12	70963665	70963665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtccagttcaccgtcaGgctatctgttgctccattgg	11	11	3	0	rs139698072	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70963665	T	T	70963665	3	4	41	1	0	0	0	0	1	0	0	0	12904	991	35	2	3307	2	PTPRB	12	70963665	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	7875838	70963665	62888230	440	48412											
LGR5	8549	broad.mit.edu	37	chr12	71946972	71946972	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatccccgtccaggcttttaGaagtttatcggcattgcaag	9	10	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71946972	C	C	71946972	3	2	41	1	0	0	0	0	1	0	0	0	8829	942	33	4	566	4	LGR5	12	71946972	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	983307	71946972	61904923	441	48413											
TPH2	121278	broad.mit.edu	37	chr12	72350261	72350261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttccttccctccttccCtccttccctccttctttccc	0	23	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72350261	A	A	72350261	1	1	41	0	1	0	0	0	0	0	0	0	16526	696	24	2		2	TPH2	12	72350261	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	403289	72350261	61501634	442	48414											
MYF6	4618	broad.mit.edu	37	chr12	81102560	81102560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagcggcctcgcgcggggCgcggagctgcttcgtgttcc	16	14	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81102560	A	A	81102560	1	1	41	0	1	0	0	0	0	0	0	0	10122	783	27	3		3	MYF6	12	81102560	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	8752299	81102560	52749335	443	48415											
ALX1	8092	broad.mit.edu	37	chr12	85677553	85677553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccttcaccagtttgcagCtagaggagctggagaaagtc	11	11	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85677553	A	A	85677553	3	1	41	1	0	0	0	0	1	0	0	0	556	796	28	3	436	3	ALX1	12	85677553	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4574993	85677553	48174342	444	48416											
SCYL2	55681	broad.mit.edu	37	chr12	100709316	100709316	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattttattttttttttaaAaaacatttttgcctttcagc	2	5	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100709316	G	G	100709316	1	3	41	0	1	0	0	0	0	0	0	0	14061	29	1	5		5	SCYL2	12	100709316	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	15031763	100709316	33142579	445	48417											
GAS2L3	283431	broad.mit.edu	37	chr12	101011511	101011512	+	Intron	INS	-	T	T													gtataaaataagtggttttaINSttttccacagttttgcacaa							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101011512	T	T	101011511	6	5	41	0	1	1	1	0	0	0	0	0	6310	464	16	0		0	GAS2L3	12	101011511	Intron	INS	-	TCGA-17-Z008-01A-01W-0746-08	302195	101011511	32840384	446	48418											
C12orf48	55010	broad.mit.edu	37	chr12	102558439	102558439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgcacagtggatccatGtatcctaatatgcttgtaac	7	10	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102558439	T	T	102558439	1	4	41	0	1	0	0	0	0	0	0	0	1705	1392	48	3		3	C12orf48	12	102558439	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1546928	102558439	31293456	447	48419											
RFX4	5992	broad.mit.edu	37	chr12	106977043	106977043	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggcatctctagcacagGggatccccaaacatcaggac	10	14	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106977043	T	T	106977043	1	4	41	0	1	0	0	0	0	0	0	0	13373	1247	43	2		2	RFX4	12	106977043	5'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4418604	106977043	26874852	448	48420											
BTBD11	121551	broad.mit.edu	37	chr12	107848217	107848217	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgacctattaagggttaGgggggttcatccaggatctc	13	8	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107848217	A	A	107848217	1	1	41	0	1	0	0	0	0	0	0	0	1548	1015	35	4		4	BTBD11	12	107848217	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	871174	107848217	26003678	449	48421											
ANAPC7	51434	broad.mit.edu	37	chr12	110824047	110824047	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttctatgaaacttggtatCgagtattaatgctgcatatt	7	5	1	1	rs150081950	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110824047	T	T	110824047	1	4	41	0	1	0	0	0	0	0	0	0	606	899	31	4		4	ANAPC7	12	110824047	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2975830	110824047	23027848	450	48422											
OAS3	4940	broad.mit.edu	37	chr12	113407867	113407867	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggtcccctaccagatgaGagagattgtgtacatgtgtg	13	8	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113407867	C	C	113407867	1	2	41	0	1	0	0	0	0	0	0	0	10896	957	33	4		4	OAS3	12	113407867	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2583820	113407867	20444028	451	48423											
TPCN1	53373	broad.mit.edu	37	chr12	113705575	113705575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcactcccaggtcctGggagggttgggcaaagagga	18	9	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113705575	T	T	113705575	1	4	41	0	1	0	0	0	0	0	0	0	16519	1363	47	2		2	TPCN1	12	113705575	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	297708	113705575	20146320	452	48424											
MED13L	23389	broad.mit.edu	37	chr12	116409904	116409904	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcatcactacaaaggaccCctggggctccatggcaacca	10	14	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116409904	T	T	116409904	3	4	41	1	0	0	0	0	1	0	0	0	9524	623	22	4	787	4	MED13L	12	116409904	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2704329	116409904	17441991	453	48425											
FBXW8	26259	broad.mit.edu	37	chr12	117365997	117365997	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaaggtataggactctccGgggtaatagaaatttactca	9	6	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117365997	A	A	117365997	1	1	41	0	1	0	0	0	0	0	0	0	5827	1131	39	4		4	FBXW8	12	117365997	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	956093	117365997	16485898	454	48426											
CIT	11113	broad.mit.edu	37	chr12	120306959	120306959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcatctaatatcccttctCgggaaagaggagacatctgc	11	10	3	2	rs142607751	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120306959	T	T	120306959	3	4	41	1	0	0	0	0	1	0	0	0	3469	884	31	4	6120	4	CIT	12	120306959	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2940962	120306959	13544936	455	48427											
GCN1L1	10985	broad.mit.edu	37	chr12	120578600	120578600	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctccttcagtagccctcCcccgccctctgagtcaggtc	7	19	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120578600	T	T	120578600	1	4	41	0	1	0	0	0	0	0	0	0	6361	638	22	4		4	GCN1L1	12	120578600	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	271641	120578600	13273295	456	48428											
NCOR2	9612	broad.mit.edu	37	chr12	124886969	124886969	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgaggaggtcttccttgtCgttctccacctccggcttct	9	14	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124886969	T	T	124886969	3	4	41	1	0	0	0	0	1	0	0	0	10331	884	31	4	6083	4	NCOR2	12	124886969	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4308369	124886969	8964926	457	48429											
ATP8A2	51761	broad.mit.edu	37	chr13	26133194	26133194	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcattgccggagtaacCtatgggtcagtgtgtttatc	12	8	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26133194	T	T	26133194	2	4	41	1	0	0	0	0	0	0	0	1	1197	668	24	4		4	ATP8A2	13	26133194	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08		26133194	89036684	458	48430											
MTUS2	23281	broad.mit.edu	37	chr13	29600343	29600343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggaaagcaaagaggtcaCcacatctgttgctgaaaaca	10	9	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29600343	A	A	29600343	3	1	41	1	0	0	0	0	1	0	0	0	10060	507	18	3	1540	3	MTUS2	13	29600343	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3467149	29600343	85569535	459	48431											
MTUS2	23281	broad.mit.edu	37	chr13	29881912	29881913	+	Intron	DNP	CC	AA	AA													cctcatggcccacatgtcctCcaaggagtaagacccccaga							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29881913	AA	AA	29881912	1	1	41	0	1	0	0	0	0	0	0	0	10060	870	30	3		3	MTUS2	13	29881912	Intron	DNP	CC	TCGA-17-Z008-01A-01W-0746-08	281569	29881912	85287966	460	48432											
STARD13	90627	broad.mit.edu	37	chr13	33680999	33680999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgcacaccacccaggagCtgggcttcctcatgctccac	9	18	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33680999	A	A	33680999	3	1	41	1	0	0	0	0	1	0	0	0	15374	796	28	3	229	3	STARD13	13	33680999	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3799087	33680999	81488879	461	48433											
LHFP	10186	broad.mit.edu	37	chr13	40175360	40175360	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctggatgccatctttcaCcagatagggcaatgaggacc	12	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40175360	A	A	40175360	1	1	41	0	1	0	0	0	0	0	0	0	8835	522	18	3		3	LHFP	13	40175360	5'UTR	SNP	C	TCGA-17-Z008-01A-01W-0746-08	6494361	40175360	74994518	462	48434											
ZC3H13	23091	broad.mit.edu	37	chr13	46554009	46554009	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcaaaggaagaatccctTgcttgatctctgttgtctct	7	11	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46554009	A	A	46554009	2	1	41	1	0	0	0	0	0	0	0	1	17691	1799	63	5		5	ZC3H13	13	46554009	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	6378649	46554009	68615869	463	48435											
CPB2	1361	broad.mit.edu	37	chr13	46638834	46638834	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggtctgttccgatgcaatGattgttcgcatagaaagaac	10	8	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46638834	C	C	46638834	3	2	41	1	0	0	0	0	1	0	0	0	3829	1290	45	4	542	4	CPB2	13	46638834	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	84825	46638834	68531044	464	48436											
RB1	5925	broad.mit.edu	37	chr13	49030607	49030607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaatatctctgtgtctcaGtttcctcatctataaaatgg	5	9	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49030607	T	T	49030607	1	4	41	0	1	0	0	0	0	0	0	0	13206	1044	36	3		3	RB1	13	49030607	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2391773	49030607	66139271	465	48437											
ATP7B	540	broad.mit.edu	37	chr13	52511839	52511839	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacaaaaggaaggcaatgcCtagtgttggcaaaaggtatc	12	6	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52511839	G	G	52511839	1	3	41	0	1	0	0	0	0	0	0	0	1195	696	24	4		4	ATP7B	13	52511839	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3481232	52511839	62658039	466	48438											
KLHL1	57626	broad.mit.edu	37	chr13	70314562	70314562	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaccaactgtgctccgaGcaattgacatactggctaca	7	13	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70314562	A	A	70314562	3	1	41	1	0	0	0	0	1	0	0	0	8436	971	34	4	496	4	KLHL1	13	70314562	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	17802723	70314562	44855316	467	48439											
SLITRK5	26050	broad.mit.edu	37	chr13	88330261	88330261	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacccccgccggcaataGcctcccggaatatcccaaat	6	19	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88330261	A	A	88330261	3	1	41	1	0	0	0	0	1	0	0	0	14860	971	34	4	2620	4	SLITRK5	13	88330261	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	18015699	88330261	26839617	468	48440											
HS6ST3	266722	broad.mit.edu	37	chr13	97357048	97357048	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaaatgtctgagcgcaCaactataatacgtaggtaac	7	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97357048	A	A	97357048	1	1	41	0	1	0	0	0	0	0	0	0	7439	493	17	3		3	HS6ST3	13	97357048	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	9026787	97357048	17812830	469	48441											
NALCN	259232	broad.mit.edu	37	chr13	101735074	101735074	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggcaatggaacacagagagGagagtaagtggcatcaaaga	14	5	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101735074	C	C	101735074	1	2	41	0	1	0	0	0	0	0	0	0	10242	1189	41	4		4	NALCN	13	101735074	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4378026	101735074	13434804	470	48442											
TFDP1	7027	broad.mit.edu	37	chr13	114286076	114286076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggtgagcacttccctctGgacccttagagttgtaggac	12	12	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114286076	T	T	114286076	1	4	41	0	1	0	0	0	0	0	0	0	15920	1363	47	2		2	TFDP1	13	114286076	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	12551002	114286076	883802	471	48443											
RASA3	22821	broad.mit.edu	37	chr13	114786894	114786894	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttaccacgcctcgtaggaGctggactgccgcaggacttt	11	13	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114786894	C	C	114786894	3	2	41	1	0	0	0	0	1	0	0	0	13170	962	34	4	1797	4	RASA3	13	114786894	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	500818	114786894	382984	472	48444											
OR4L1	122742	broad.mit.edu	37	chr14	20528951	20528951	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcattgtggtcactctgTtctttggaccttgtattttt	7	8	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20528951	C	C	20528951	3	2	41	1	0	0	0	0	1	0	0	0	11168	1725	60	5	750	5	OR4L1	14	20528951	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08		20528951	86820589	473	48445											
NDRG2	57447	broad.mit.edu	37	chr14	21492345	21492345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccaagacccagactccCagggtcatcaacctcctcgg	8	17	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21492345	A	A	21492345	1	1	41	0	1	0	0	0	0	0	0	0	10347	609	21	2		2	NDRG2	14	21492345	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	963394	21492345	85857195	474	48446											
HNRNPC	3183	broad.mit.edu	37	chr14	21679295	21679295	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtgctgaagatactagGggagaggatctggtgaaaaa	15	4	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21679295	C	C	21679295	1	2	41	0	1	0	0	0	0	0	0	0	7329	1247	43	4		4	HNRNPC	14	21679295	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	186950	21679295	85670245	475	48447											
MYH6	4624	broad.mit.edu	37	chr14	23874812	23874812	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacgcagcacaggaagcctCtgcagtgtgcaggagccact	12	14	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23874812	T	T	23874812	1	4	41	0	1	0	0	0	0	0	0	0	10132	928	32	4		4	MYH6	14	23874812	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2195517	23874812	83474728	476	48448											
GZMH	2999	broad.mit.edu	37	chr14	25077035	25077035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagcagatgacagctgtGgcagggtagggctgcagctg	18	7	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25077035	T	T	25077035	1	4	41	0	1	0	0	0	0	0	0	0	6982	1363	47	2		2	GZMH	14	25077035	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1202223	25077035	82272505	477	48449											
FSCB	84075	broad.mit.edu	37	chr14	44975097	44975098	+	Missense_Mutation	DNP	GC	TT	TT													ctggtggaggcagaatttcaGcaggaggctcttctgaaggg							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44975098	TT	TT	44975097	3	4	41	1	0	0	0	0	1	0	0	0	6126	971	34	3	1387	3	FSCB	14	44975097	Missense_Mutation	DNP	GC	TCGA-17-Z008-01A-01W-0746-08	19898062	44975097	62374443	478	48450											
FSCB	84075	broad.mit.edu	37	chr14	44975184	44975184	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggagactcttcagctgatGgaggctgaatttcagcagga	13	7	3	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44975184	A	A	44975184	3	1	41	1	0	0	0	0	1	0	0	0	6126	1348	47	4	1474	4	FSCB	14	44975184	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	87	44975184	62374356	479	48451											
WDHD1	11169	broad.mit.edu	37	chr14	55434069	55434069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatatagcaacagcagggcGtggaagggttgggggaaacc	16	6	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55434069	A	A	55434069	3	1	41	1	0	0	0	0	1	0	0	0	17398	1145	40	4	1322	4	WDHD1	14	55434069	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	10458885	55434069	51915471	480	48452											
PELI2	57161	broad.mit.edu	37	chr14	56763840	56763840	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgctacacagctggttgggGagcaaaactgcatcaaatta	11	8	1	0	rs140174739	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56763840	A	A	56763840	3	1	41	1	0	0	0	0	1	0	0	0	11816	1175	41	4	1241	4	PELI2	14	56763840	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1329771	56763840	50585700	481	48453											
C14orf50	145376	broad.mit.edu	37	chr14	65056006	65056006	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgaggattcaggatacaCtggacttggtcatgaaaaca	10	7	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65056006	T	T	65056006	2	4	41	1	0	0	0	0	0	0	0	1	1790	564	20	4		4	C14orf50	14	65056006	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	8292166	65056006	42293534	482	48454											
FNTB	2342	broad.mit.edu	37	chr14	65417160	65417160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaggatgggcagaacagcCagtgagtgctgcctgccccc	13	13	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65417160	T	T	65417160	1	4	41	0	1	0	0	0	0	0	0	0	6036	609	21	4		4	FNTB	14	65417160	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	361154	65417160	41932380	483	48455											
GPHN	10243	broad.mit.edu	37	chr14	67646332	67646332	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgatcctcgtccagaatAccatcggtgtatactaactt	6	11	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67646332	G	G	67646332	3	3	41	1	0	0	0	0	1	0	0	0	6675	391	14	5	2203	5	GPHN	14	67646332	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2229172	67646332	39703208	484	48456											
DCAF4	26094	broad.mit.edu	37	chr14	73404849	73404849	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacacatggcatgtcacaCgatcacaggtgtggagatca	11	9	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73404849	T	T	73404849	1	4	41	0	1	0	0	0	0	0	0	0	4303	551	19	4		4	DCAF4	14	73404849	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5758517	73404849	33944691	485	48457											
NPC2	10577	broad.mit.edu	37	chr14	74947404	74947404	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcacccccagatagacttaCgatctgtactgggatttccc	7	14	2	2	rs140130028	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74947404	T	T	74947404	5	4	41	1	0	0	0	0	0	0	1	0	10667	550	19	4	21	4	NPC2	14	74947404	Splice_Site	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1542555	74947404	32402136	486	48458											
C14orf179	112752	broad.mit.edu	37	chr14	76549202	76549202	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttatcatcattcatctcacAgcaaccctggacccaacata	3	14	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76549202	T	T	76549202	1	4	41	0	1	0	0	0	0	0	0	0	1775	203	7	5		5	C14orf179	14	76549202	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1601798	76549202	30800338	487	48459											
ISM2	145501	broad.mit.edu	37	chr14	77944577	77944577	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggggcaagcctagccccTcactcaccttgatcatgcat	8	16	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77944577	G	G	77944577	1	3	41	0	1	0	0	0	0	0	0	0	7931	1566	54	5		5	ISM2	14	77944577	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1395375	77944577	29404963	488	48460											
ZC3H14	79882	broad.mit.edu	37	chr14	89029996	89029996	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgctctttttctctcagaGtgccattaaggggaaattac	8	8	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89029996	C	C	89029996	3	2	41	1	0	0	0	0	1	0	0	0	17692	1043	36	4	44	4	ZC3H14	14	89029996	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	11085419	89029996	18319544	489	48461											
TDP1	55775	broad.mit.edu	37	chr14	90450944	90450944	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacattttaaagctgatctCatcagttacttgatggctta	6	8	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90450944	A	A	90450944	2	1	41	1	0	0	0	0	0	0	0	1	15850	813	29	3		3	TDP1	14	90450944	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1420948	90450944	16898596	490	48462											
PPP4R4	57718	broad.mit.edu	37	chr14	94731783	94731783	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccccatttctgttcctGgaccctcttctgtcacccca	4	18	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731783	T	T	94731783	4	4	41	1	0	0	0	0	0	1	0	0	12506	1349	47	2	2412	2	PPP4R4	14	94731783	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4280839	94731783	12617757	491	48463											
BCL11B	64919	broad.mit.edu	37	chr14	99723595	99723595	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaccaaaagcaagcagCcatcagccatttgggcctcc	7	17	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99723595	G	G	99723595	1	3	41	0	1	0	0	0	0	0	0	0	1369	754	26	4		4	BCL11B	14	99723595	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4991812	99723595	7625945	492	48464											
TDRD9	122402	broad.mit.edu	37	chr14	104441751	104441751	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgatgtcggctaccatcaGctgtaaagagtttgcagact	10	10	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104441751	A	A	104441751	3	1	41	1	0	0	0	0	1	0	0	0	15858	971	34	4	898	4	TDRD9	14	104441751	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4718156	104441751	2907789	493	48465											
AHNAK2	113146	broad.mit.edu	37	chr14	105410567	105410567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggggcccttgatgtccaCctgggggcccttgaggtcca	14	13	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105410567	A	A	105410567	3	1	41	1	0	0	0	0	1	0	0	0	415	507	18	3	6170	3	AHNAK2	14	105410567	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	968816	105410567	1938973	494	48466											
AHNAK2	113146	broad.mit.edu	37	chr14	105418993	105418993	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacatctatctgggggcccTtgaggtccactttgggcatc	11	11	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105418993	C	C	105418993	3	2	41	1	0	0	0	0	1	0	0	0	415	1609	56	5	14596	5	AHNAK2	14	105418993	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	8426	105418993	1930547	495	48467											
GABRG3	2567	broad.mit.edu	37	chr15	27222232	27222232	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaatcccaagacaccgAcgtgactcttattctcaaca	4	14	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27222232	T	T	27222232	3	4	41	1	0	0	0	0	1	0	0	0	6233	275	10	5	143	5	GABRG3	15	27222232	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08		27222232	75309160	496	48468											
RYR3	6263	broad.mit.edu	37	chr15	34049897	34049897	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtcttttggagaaatgaaActggatgatgttttggtttg	13	2	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34049897	C	C	34049897	1	2	41	0	1	0	0	0	0	0	0	0	13881	58	2	5		5	RYR3	15	34049897	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	6827665	34049897	68481495	497	48469											
SPG11	80208	broad.mit.edu	37	chr15	44914426	44914426	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgagactacctgggaaaTgactggatttgcatattttc	9	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44914426	G	G	44914426	2	3	41	1	0	0	0	0	0	0	0	1	15159	1451	51	5		5	SPG11	15	44914426	Silent	SNP	T	TCGA-17-Z008-01A-01W-0746-08	10864529	44914426	57616966	498	48470											
SLC30A4	7782	broad.mit.edu	37	chr15	45814446	45814446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgagaaagcccctcgtccCccgcctcatccgagaagtca	8	18	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45814446	A	A	45814446	3	1	41	1	0	0	0	0	1	0	0	0	14671	623	22	2	1210	2	SLC30A4	15	45814446	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	900020	45814446	56716946	499	48471											
ZNF280D	54816	broad.mit.edu	37	chr15	56958443	56958443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactatgctgagaaataggaCcaggcaatatcctaaaagtt	8	7	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56958443	A	A	56958443	1	1	41	0	1	0	0	0	0	0	0	0	17943	522	18	3		3	ZNF280D	15	56958443	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	11143997	56958443	45572949	500	48472											
CGNL1	84952	broad.mit.edu	37	chr15	57816936	57816936	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcccgactgacagccatgaAaatgcaggatgaggtaatgc	12	9	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57816936	T	T	57816936	3	4	41	1	0	0	0	0	1	0	0	0	3334	14	1	5	3068	5	CGNL1	15	57816936	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	858493	57816936	44714456	501	48473											
CCNB2	9133	broad.mit.edu	37	chr15	59408904	59408904	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaggttcagccagtttccCggaagaagcttcaattagtt	9	8	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59408904	T	T	59408904	3	4	41	1	0	0	0	0	1	0	0	0	2943	643	23	4	635	4	CCNB2	15	59408904	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1591968	59408904	43122488	502	48474											
VPS13C	54832	broad.mit.edu	37	chr15	62276023	62276023	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctccttgcacttacagcaTcatagatgacctccacaggc	6	14	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62276023	A	A	62276023	3	1	41	1	0	0	0	0	1	0	0	0	17318	1435	50	5	9643	5	VPS13C	15	62276023	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2867119	62276023	40255369	503	48475											
UACA	55075	broad.mit.edu	37	chr15	70960708	70960708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttctgtatatttttgtGttacatctaaaagctttcta	4	6	4	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70960708	T	T	70960708	3	4	41	1	0	0	0	0	1	0	0	0	16950	1377	48	3	1951	3	UACA	15	70960708	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8684685	70960708	31570684	504	48476											
TBC1D21	161514	broad.mit.edu	37	chr15	74178573	74178573	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcatgggaagggggctGggacccaactgtcagtccct	15	12	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74178573	A	A	74178573	1	1	41	0	1	0	0	0	0	0	0	0	15729	1363	47	4		4	TBC1D21	15	74178573	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3217865	74178573	28352819	505	48477											
ACSBG1	23205	broad.mit.edu	37	chr15	78474244	78474244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacaaatgcactcagggcCcacagacacatgtggacgtg	10	13	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78474244	A	A	78474244	1	1	41	0	1	0	0	0	0	0	0	0	173	638	22	2		2	ACSBG1	15	78474244	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4295671	78474244	24057148	506	48478											
FANCI	55215	broad.mit.edu	37	chr15	89826497	89826497	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggtaaggattatttacGttaacttgcagtgtgtgcgt	12	5	1	0	rs142941067	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89826497	A	A	89826497	1	1	41	0	1	0	0	0	0	0	0	0	5726	1160	40	4		4	FANCI	15	89826497	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	11352253	89826497	12704895	507	48479											
KIF7	374654	broad.mit.edu	37	chr15	90188282	90188282	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caataagctcctccttcatgCggatgttgatagccagctcc	8	13	1	1	rs138021610		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90188282	G	G	90188282	3	3	41	1	0	0	0	0	1	0	0	0	8379	768	27	4	1918	4	KIF7	15	90188282	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	361785	90188282	12343110	508	48480											
IGF1R	3480	broad.mit.edu	37	chr15	99440124	99440124	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcaatttgctcattaacatCcgacgggggagtaagtattc	11	8	1	0	rs149559330		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99440124	G	G	99440124	3	3	41	1	0	0	0	0	1	0	0	0	7641	845	30	4	1106	4	IGF1R	15	99440124	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	9251842	99440124	3091268	509	48481											
SRRM2	23524	broad.mit.edu	37	chr16	2815038	2815038	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcgttctccatcatccccAgagctcaacaacaagtgtct	6	14	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2815038	T	T	2815038	2	4	41	1	0	0	0	0	0	0	0	1	15287	175	7	5		5	SRRM2	16	2815038	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08		2815038	87539715	510	48482											
A2BP1	54715	broad.mit.edu	37	chr16	7176510	7176510	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgactgctgtggcctctacTatgttttgaatacaaatttc	7	9	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7176510	A	A	7176510	1	1	41	0	1	0	0	0	0	0	0	0	3	1537	53	5		5	A2BP1	16	7176510	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	4361472	7176510	83178243	511	48483											
NOMO1	23420	broad.mit.edu	37	chr16	14958479	14958479	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaccagagcagggctgaCgttgaaaccccagacatttc	10	11	0	5	rs149399039	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14958479	T	T	14958479	3	4	41	1	0	0	0	0	1	0	0	0	10626	536	19	4	1483	4	NOMO1	16	14958479	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	7781969	14958479	75396274	512	48484											
TMC5	79838	broad.mit.edu	37	chr16	19452068	19452068	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaatcagaacttgccaagCacttggagagaacctgatta	9	9	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19452068	T	T	19452068	2	4	41	1	0	0	0	0	0	0	0	1	16111	709	25	4		4	TMC5	16	19452068	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4493589	19452068	70902685	513	48485											
C16orf62	57020	broad.mit.edu	37	chr16	19592895	19592895	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcaggattacgtgaacCgcatagaggagctcaaccaa	10	11	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19592895	T	T	19592895	3	4	41	1	0	0	0	0	1	0	0	0	1839	652	23	4	585	4	C16orf62	16	19592895	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	140827	19592895	70761858	514	48486											
CDR2	1039	broad.mit.edu	37	chr16	22360698	22360698	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcccttggccagatgacttCagctcctccacttggctctg	8	16	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22360698	G	G	22360698	2	3	41	1	0	0	0	0	0	0	0	1	3202	813	29	4		4	CDR2	16	22360698	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2767803	22360698	67994055	515	48487											
PRKCB	5579	broad.mit.edu	37	chr16	24180752	24180752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgttagcctacgtgacCttacatgatgcgtccctcag	9	11	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24180752	A	A	24180752	1	1	41	0	1	0	0	0	0	0	0	0	12614	696	24	2		2	PRKCB	16	24180752	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1820054	24180752	66174001	516	48488											
CACNG3	10368	broad.mit.edu	37	chr16	24358052	24358052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacccttatctgtttccaCaggggctttccgaggcgtgt	11	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24358052	A	A	24358052	1	1	41	0	1	0	0	0	0	0	0	0	2584	493	17	3		3	CACNG3	16	24358052	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	177300	24358052	65996701	517	48489											
SH2B1	25970	broad.mit.edu	37	chr16	28884763	28884763	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttttcttaccattcctaTccagaaccgaccacctccca	3	17	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28884763	C	C	28884763	1	2	41	0	1	0	0	0	0	0	0	0	14340	1450	50	5		5	SH2B1	16	28884763	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	4526711	28884763	61469990	518	48490											
SETD1A	9739	broad.mit.edu	37	chr16	30975313	30975313	+	Intron	DEL	A	-	-													atagagcgagactccgtctcAaaaaaaaaaaaagggaacta							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30975313	-	-	30975313	6	5	41	0	1	1	0	1	0	0	0	0	14243	145	5	0		0	SETD1A	16	30975313	Intron	DEL	A	TCGA-17-Z008-01A-01W-0746-08	2090550	30975313	59379440	519	48491											
FUS	2521	broad.mit.edu	37	chr16	31199708	31199708	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacgtggtggcatgaaaagaGtggctaaagtggtatcaaga	14	5	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31199708	C	C	31199708	1	2	41	0	1	0	0	0	0	0	0	0	6160	1044	36	4		4	FUS	16	31199708	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	224395	31199708	59155045	520	48492											
ITGAM	3684	broad.mit.edu	37	chr16	31340629	31340629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcatcaatatcaggtggGcagctgggacgtctgggtcc	15	10	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31340629	A	A	31340629	1	1	41	0	1	0	0	0	0	0	0	0	7957	1218	42	4		4	ITGAM	16	31340629	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	140921	31340629	59014124	521	48493											
ITGAX	3687	broad.mit.edu	37	chr16	31383515	31383515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaaaaaaacaaagacaAacaaggggagagaacagaga	13	4	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31383515	T	T	31383515	1	4	41	0	1	0	0	0	0	0	0	0	7959	29	1	5		5	ITGAX	16	31383515	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	42886	31383515	58971238	522	48494											
ITGAD	3681	broad.mit.edu	37	chr16	31418759	31418759	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggactccccagcctctccaGatgagaggactgcaaatgat	10	12	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31418759	T	T	31418759	1	4	41	0	1	0	0	0	0	0	0	0	7954	957	33	3		3	ITGAD	16	31418759	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	35244	31418759	58935994	523	48495											
SALL1	6299	broad.mit.edu	37	chr16	51175927	51175927	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttacgattaaaactaatTgatttttagtacagttcttc	4	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51175927	A	A	51175927	3	1	41	1	0	0	0	0	1	0	0	0	13921	1812	63	5	3776	5	SALL1	16	51175927	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	19757168	51175927	39178826	524	48496											
CES1	1066	broad.mit.edu	37	chr16	55857682	55857682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttggtgacctacctgttGgttacaactgaaggaggatg	13	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55857682	T	T	55857682	1	4	41	0	1	0	0	0	0	0	0	0	3299	1363	47	2		2	CES1	16	55857682	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4681755	55857682	34497071	525	48497											
CDH8	1006	broad.mit.edu	37	chr16	61761122	61761122	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatctgactgtggttccctAtgggaaggaaaaaataacat	9	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61761122	G	G	61761122	1	3	41	0	1	0	0	0	0	0	0	0	3146	464	16	5		5	CDH8	16	61761122	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	5903440	61761122	28593631	526	48498											
FHOD1	29109	broad.mit.edu	37	chr16	67265199	67265199	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgactgtcgacgcacCgtgtccttcacctctgacac	9	15	2	2	rs143498229		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67265199	T	T	67265199	2	4	41	1	0	0	0	0	0	0	0	1	5939	639	23	4		4	FHOD1	16	67265199	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5504077	67265199	23089554	527	48499											
AGRP	181	broad.mit.edu	37	chr16	67517407	67517407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggagtccctgcccaaCctgaggactcacctctgcct	11	15	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67517407	T	T	67517407	1	4	41	0	1	0	0	0	0	0	0	0	398	522	18	4		4	AGRP	16	67517407	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	252208	67517407	22837346	528	48500											
SF3B3	23450	broad.mit.edu	37	chr16	70562833	70562833	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttggagctgcttcgccCagaccccaacactggcaaag	10	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70562833	T	T	70562833	3	4	41	1	0	0	0	0	1	0	0	0	14265	594	21	4	134	4	SF3B3	16	70562833	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3045426	70562833	19791920	529	48501											
PMFBP1	83449	broad.mit.edu	37	chr16	72184620	72184620	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagaggtttaagctcctctCtagagaggcgatcttgtccc	11	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72184620	G	G	72184620	3	3	41	1	0	0	0	0	1	0	0	0	12229	922	32	4	2628	4	PMFBP1	16	72184620	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1621787	72184620	18170133	530	48502											
GLG1	2734	broad.mit.edu	37	chr16	74542869	74542869	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagaaaaactccagttagAacagtacgaaatttattatc	5	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74542869	T	T	74542869	1	4	41	0	1	0	0	0	0	0	0	0	6500	261	9	5		5	GLG1	16	74542869	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2358249	74542869	15811884	531	48503											
CNTNAP4	85445	broad.mit.edu	37	chr16	76532538	76532538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtgattacagacacaggccGactgcattcagaagcagctt	10	11	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76532538	T	T	76532538	3	4	41	1	0	0	0	0	1	0	0	0	3681	1058	37	3	2383	3	CNTNAP4	16	76532538	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1989669	76532538	13822215	532	48504											
CDH13	1012	broad.mit.edu	37	chr16	83251135	83251135	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccatgcccaccctgtgcGcagaaatgtggctttcaaag	9	14	1	1	rs138221080	by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83251135	A	A	83251135	1	1	41	0	1	0	0	0	0	0	0	0	3129	1102	38	4		4	CDH13	16	83251135	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	6718597	83251135	7103618	533	48505											
SRR	63826	broad.mit.edu	37	chr17	2221101	2221101	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggatagaaaatctagaaaaGctccttgctttccaaaacaa	6	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2221101	C	C	2221101	1	2	41	0	1	0	0	0	0	0	0	0	15284	986	34	4		4	SRR	17	2221101	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08		2221101	78974109	534	48506											
OR3A2	4995	broad.mit.edu	37	chr17	3181724	3181724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcgtggacatggccacaGtgtgggtcagtgcgttggtg	18	7	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3181724	T	T	3181724	3	4	41	1	0	0	0	0	1	0	0	0	11132	1029	36	3	463	3	OR3A2	17	3181724	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	960623	3181724	78013486	535	48507											
OR3A3	8392	broad.mit.edu	37	chr17	3324477	3324477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcacccaactcaatgagCtgctgctctttgtagcagca	8	14	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3324477	A	A	3324477	3	1	41	1	0	0	0	0	1	0	0	0	11133	796	28	3	618	3	OR3A3	17	3324477	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	142753	3324477	77870733	536	48508											
C17orf85	55421	broad.mit.edu	37	chr17	3716652	3716652	+	Intron	SNP	C	A	A													tgagggggcagcagcactgcCaacacctgctgtgcaggaaa							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3716652	A	A	3716652	1	1	41	0	1	0	0	0	0	0	0	0	1905	609	21	2		2	C17orf85	17	3716652	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	392175	3716652	77478558	537	48509	241	2									
C17orf85	55421	broad.mit.edu	37	chr17	3716655	3716655	+	Intron	SNP	C	A	A													gggggcagcagcactgccaaCacctgctgtgcaggaaacgc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3716655	A	A	3716655	1	1	41	0	1	0	0	0	0	0	0	0	1905	493	17	3		3	C17orf85	17	3716655	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3	3716655	77478555	538	48510	241	2									
NUP88	4927	broad.mit.edu	37	chr17	5319963	5319963	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgggcttaacaagacttGatagatttcaaacaggggtg	12	5	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5319963	C	C	5319963	3	2	41	1	0	0	0	0	1	0	0	0	10866	1299	45	4	1952	4	NUP88	17	5319963	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1603308	5319963	75875247	539	48511											
C17orf49	124944	broad.mit.edu	37	chr17	6919343	6919343	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccttgaggactgaaagaaTagaattgtcacagttggtca	10	8	2	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6919343	G	G	6919343	1	3	41	0	1	0	0	0	0	0	0	0	1876	1421	49	5		5	C17orf49	17	6919343	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1599380	6919343	74275867	540	48512											
DLG4	1742	broad.mit.edu	37	chr17	7096708	7096708	+	Intron	DEL	C	-	-													gtatctccctacacaccgatCccccaggaggctctgcctat					rs3215125		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7096708	-	-	7096708	6	5	41	0	1	1	0	1	0	0	0	0	4597	870	30	0		0	DLG4	17	7096708	Intron	DEL	C	TCGA-17-Z008-01A-01W-0746-08	177365	7096708	74098502	541	48513											
MYH4	4622	broad.mit.edu	37	chr17	10366661	10366661	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttattaacttacatgtttCaatatctgcagaagccagtt	5	7	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10366661	A	A	10366661	4	1	41	1	0	0	0	0	0	1	0	0	10131	835	29	3	5148	3	MYH4	17	10366661	Nonsense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3269953	10366661	70828549	542	48514											
MYH2	4620	broad.mit.edu	37	chr17	10428863	10428863	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagctcagtgccaagggaaCgggcctccttctgggaggcc	14	13	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10428863	T	T	10428863	3	4	41	1	0	0	0	0	1	0	0	0	10129	536	19	4	1419	4	MYH2	17	10428863	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	62202	10428863	70766347	543	48515											
TTC19	54902	broad.mit.edu	37	chr17	15930734	15930734	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccaggaagcactgaagcaAgcaaagctgaaaaaagatga	10	7	0	4	rs77955179	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15930734	G	G	15930734	2	3	41	1	0	0	0	0	0	0	0	1	16812	69	3	5		5	TTC19	17	15930734	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	5501871	15930734	65264476	544	48516											
TRPV2	51393	broad.mit.edu	37	chr17	16321143	16321143	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggaaattcgcccctcagaTaagagtcaacctcaactacc	6	15	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16321143	A	A	16321143	3	1	41	1	0	0	0	0	1	0	0	0	16721	1406	49	5	163	5	TRPV2	17	16321143	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	390409	16321143	64874067	545	48517											
FLII	2314	broad.mit.edu	37	chr17	18158065	18158065	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcccacctgccccctgcCccccactggcctggcacctg	10	22	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18158065	T	T	18158065	1	4	41	0	1	0	0	0	0	0	0	0	5982	638	22	4		4	FLII	17	18158065	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1836922	18158065	63037145	546	48518											
KSR1	8844	broad.mit.edu	37	chr17	25919379	25919379	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacaccaacctccccttcTttaccaggttgaagtgtcac	6	15	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25919379	G	G	25919379	1	3	41	0	1	0	0	0	0	0	0	0	8653	1624	56	5		5	KSR1	17	25919379	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	7761314	25919379	55275831	547	48519											
MYO18A	399687	broad.mit.edu	37	chr17	27409244	27409244	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaatgccagacaagagacaCaggcctgccctcatgggatc	10	13	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27409244	G	G	27409244	1	3	41	0	1	0	0	0	0	0	0	0	10159	493	17	4		4	MYO18A	17	27409244	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1489865	27409244	53785966	548	48520											
ZNF207	7756	broad.mit.edu	37	chr17	30677325	30677325	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggtcgcaagaagaagaaGcagctgaagccgtggtgctg	16	7	0	4	rs140451700	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30677325	A	A	30677325	2	1	41	1	0	0	0	0	0	0	0	1	17891	962	34	4		4	ZNF207	17	30677325	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3268081	30677325	50517885	549	48521											
MYO1D	4642	broad.mit.edu	37	chr17	31107615	31107615	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatatcacaatacaagtgtCttttgatcgcctcttcatag	6	9	4	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31107615	A	A	31107615	3	1	41	1	0	0	0	0	1	0	0	0	10165	913	32	3	2821	3	MYO1D	17	31107615	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	430290	31107615	50087595	550	48522											
C17orf66	256957	broad.mit.edu	37	chr17	34192056	34192056	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccgagccgagccgagcCggccgagccagatggagctg	17	13	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34192056	T	T	34192056	1	4	41	0	1	0	0	0	0	0	0	0	1890	667	23	4		4	C17orf66	17	34192056	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3084441	34192056	47003154	551	48523											
RARA	5914	broad.mit.edu	37	chr17	38508135	38508135	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgagcagcctgcagctgcCctcttaaccccctctgccct	7	20	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38508135	G	G	38508135	1	3	41	0	1	0	0	0	0	0	0	0	13160	638	22	4		4	RARA	17	38508135	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4316079	38508135	42687075	552	48524											
KCNH4	23415	broad.mit.edu	37	chr17	40318173	40318173	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtcgtagggcggagggaCcgagagagtactcctcagca	16	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40318173	G	G	40318173	1	3	41	0	1	0	0	0	0	0	0	0	8104	522	18	4		4	KCNH4	17	40318173	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1810038	40318173	40877037	553	48525											
KCNH4	23415	broad.mit.edu	37	chr17	40321497	40321497	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagaccctgcaggctacctCgttggcgtcgatgccgctgt	14	13	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40321497	A	A	40321497	4	1	41	1	0	0	0	0	0	1	0	0	8104	893	31	3	1497	3	KCNH4	17	40321497	Nonsense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3324	40321497	40873713	554	48526											
AOC3	8639	broad.mit.edu	37	chr17	41008646	41008646	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagctgggcactgggccGgcagcctggttccctctttc	14	14	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41008646	T	T	41008646	1	4	41	0	1	0	0	0	0	0	0	0	730	1131	39	1		1	AOC3	17	41008646	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	687149	41008646	40186564	555	48527											
HDAC5	10014	broad.mit.edu	37	chr17	42156290	42156290	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttagggtggggagtagggTtgccatgcatacccctctaa	14	9	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42156290	A	A	42156290	1	1	41	0	1	0	0	0	0	0	0	0	7077	1740	60	5		5	HDAC5	17	42156290	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1147644	42156290	39038920	556	48528											
SKAP1	8631	broad.mit.edu	37	chr17	46262017	46262017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacccagcatagcaaccatGgctcacatgcaatacagaag	8	12	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46262017	A	A	46262017	1	1	41	0	1	0	0	0	0	0	0	0	14468	1363	47	4		4	SKAP1	17	46262017	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4105727	46262017	34933193	557	48529											
IGF2BP1	10642	broad.mit.edu	37	chr17	47121281	47121281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggagtggagggtttctgGgccatgctacttgggccccc	17	10	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47121281	T	T	47121281	1	4	41	0	1	0	0	0	0	0	0	0	7643	1247	43	2		2	IGF2BP1	17	47121281	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	859264	47121281	34073929	558	48530											
B4GALNT2	124872	broad.mit.edu	37	chr17	47233830	47233830	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtgacacttgaaggagctCtcaaggatgtgcaggagtcc	14	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47233830	A	A	47233830	1	1	41	0	1	0	0	0	0	0	0	0	1272	928	32	3		3	B4GALNT2	17	47233830	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	112549	47233830	33961380	559	48531											
ITGA3	3675	broad.mit.edu	37	chr17	48153085	48153085	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatgcgctgccagaagctgGagctgctcctgatggtgagg	16	9	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48153085	T	T	48153085	4	4	41	1	0	0	0	0	0	1	0	0	7947	1175	41	3	1706	3	ITGA3	17	48153085	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	919255	48153085	33042125	560	48532											
COL1A1	1277	broad.mit.edu	37	chr17	48262859	48262859	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagccaggttgggatggaggGagtttacaggaagcagacag	18	5	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48262859	A	A	48262859	1	1	41	0	1	0	0	0	0	0	0	0	3709	1189	41	4		4	COL1A1	17	48262859	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	109774	48262859	32932351	561	48533											
SCPEP1	59342	broad.mit.edu	37	chr17	55078369	55078369	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgggtaggaattgactctGagaggcacctagaggcagtt	14	7	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55078369	T	T	55078369	1	4	41	0	1	0	0	0	0	0	0	0	14048	1305	45	3		3	SCPEP1	17	55078369	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	6815510	55078369	26116841	562	48534											
TBX4	9496	broad.mit.edu	37	chr17	59544830	59544830	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggaatctggcctcaccagCccctggagtaatcacctgct	11	14	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59544830	G	G	59544830	1	3	41	0	1	0	0	0	0	0	0	0	15782	754	26	4		4	TBX4	17	59544830	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4466461	59544830	21650380	563	48535											
ACE	1636	broad.mit.edu	37	chr17	61560494	61560495	+	Frame_Shift_Ins	INS	-	C	C													gggggtctttagtgggcgtaINScccccccttcccgctacaac							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61560495	C	C	61560494	7	5	41	1	0	1	1	0	0	0	0	0	136	391	14	0	1481	0	ACE	17	61560494	Frame_Shift_Ins	INS	-	TCGA-17-Z008-01A-01W-0746-08	2015664	61560494	19634716	564	48536											
BPTF	2186	broad.mit.edu	37	chr17	65955616	65955616	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccagatcacacatttacatGactctaatgatagtcttgta	6	9	3	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65955616	A	A	65955616	1	1	41	0	1	0	0	0	0	0	0	0	1504	1305	45	4		4	BPTF	17	65955616	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4395122	65955616	15239594	565	48537											
ABCA9	10350	broad.mit.edu	37	chr17	66985229	66985229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagttgtacttttaccagctCcattgtgtcctaacagtcct	6	11	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66985229	A	A	66985229	3	1	41	1	0	0	0	0	1	0	0	0	39	855	30	3	924	3	ABCA9	17	66985229	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1029613	66985229	14209981	566	48538											
ABCA6	23460	broad.mit.edu	37	chr17	67129805	67129805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgctgaatcttggagaccCatcattttcatcaaattctt	5	9	5	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67129805	A	A	67129805	3	1	41	1	0	0	0	0	1	0	0	0	36	594	21	2	4221	2	ABCA6	17	67129805	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	144576	67129805	14065405	567	48539											
SEPT9	10801	broad.mit.edu	37	chr17	75398286	75398286	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaactcagaaccctcGgcccgccatgtggactccct	10	15	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75398286	T	T	75398286	2	4	41	1	0	0	0	0	0	0	0	1	14184	1103	39	1		1	SEPT9	17	75398286	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8268481	75398286	5796924	568	48540											
ENPP7	339221	broad.mit.edu	37	chr17	77707281	77707281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccggtccatcccgccgCcctctgcacctcttcctccc	6	24	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77707281	A	A	77707281	1	1	41	0	1	0	0	0	0	0	0	0	5177	754	26	3		3	ENPP7	17	77707281	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2308995	77707281	3487929	569	48541											
RPTOR	57521	broad.mit.edu	37	chr17	78854115	78854115	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaggaaataattgaggtAtaagaagtccctgcccttat	10	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78854115	G	G	78854115	1	3	41	0	1	0	0	0	0	0	0	0	13776	464	16	5		5	RPTOR	17	78854115	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1146834	78854115	2341095	570	48542											
DLGAP1	9229	broad.mit.edu	37	chr18	3879412	3879412	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccatggtcatcacgccCgagggggcgtggtagatgca	15	12	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3879412	A	A	3879412	2	1	41	1	0	0	0	0	0	0	0	1	4599	639	23	1		1	DLGAP1	18	3879412	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08		3879412	74197836	571	48543											
LAMA1	284217	broad.mit.edu	37	chr18	7015845	7015845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggtattctgagtgtgtGggcagtcacaggctgaaata	14	7	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7015845	T	T	7015845	3	4	41	1	0	0	0	0	1	0	0	0	8677	1348	47	2	6393	2	LAMA1	18	7015845	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3136433	7015845	71061403	572	48544											
PTPRM	5797	broad.mit.edu	37	chr18	7888171	7888171	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccacctgctcttaccccaActtaaagaaaatgacaccca	4	16	1	2	rs149248930		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7888171	G	G	7888171	2	3	41	1	0	0	0	0	0	0	0	1	12914	40	2	5		5	PTPRM	18	7888171	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	872326	7888171	70189077	573	48545											
KIAA0802	23255	broad.mit.edu	37	chr18	8798155	8798155	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtccaggggggtcaccagGcggatggcccagaccacgac	16	13	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8798155	A	A	8798155	3	1	41	1	0	0	0	0	1	0	0	0	8264	1203	42	4	2332	4	KIAA0802	18	8798155	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	909984	8798155	69279093	574	48546											
CEP192	55125	broad.mit.edu	37	chr18	13059281	13059281	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggccagcaccgtcactctCactgccattgccgagagtcc	9	16	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13059281	T	T	13059281	2	4	41	1	0	0	0	0	0	0	0	1	3281	813	29	4		4	CEP192	18	13059281	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4261126	13059281	65017967	575	48547											
NPC1	4864	broad.mit.edu	37	chr18	21141409	21141409	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttggtggcattacaggcGtcagcgtccttcccacacag	11	13	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21141409	A	A	21141409	2	1	41	1	0	0	0	0	0	0	0	1	10665	1136	40	4		4	NPC1	18	21141409	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	8082128	21141409	56935839	576	48548											
DSC3	1825	broad.mit.edu	37	chr18	28584393	28584393	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcttcccttagcatttgTttcatcacgcttgtttttga	5	9	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28584393	C	C	28584393	1	2	41	0	1	0	0	0	0	0	0	0	4807	1740	60	5		5	DSC3	18	28584393	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	7442984	28584393	49492855	577	48549											
DSC3	1825	broad.mit.edu	37	chr18	28602248	28602248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaagttataataaatggGggagggaagcttaatcctca	11	5	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28602248	T	T	28602248	1	4	41	0	1	0	0	0	0	0	0	0	4807	1247	43	2		2	DSC3	18	28602248	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	17855	28602248	49475000	578	48550											
DSC3	1825	broad.mit.edu	37	chr18	28609378	28609378	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcatgaacatctttaatcaGatctgtttatttttatatgt	4	6	4	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28609378	C	C	28609378	1	2	41	0	1	0	0	0	0	0	0	0	4807	957	33	4		4	DSC3	18	28609378	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	7130	28609378	49467870	579	48551											
FAM59A	64762	broad.mit.edu	37	chr18	29973143	29973143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaagtttacctctgaattGttttttttttttttttaaaa	3	3	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29973143	T	T	29973143	1	4	41	0	1	0	0	0	0	0	0	0	5643	1392	48	3		3	FAM59A	18	29973143	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1363765	29973143	48104105	580	48552											
ASXL3	80816	broad.mit.edu	37	chr18	31314310	31314310	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgcagttgcggataaggcAagaaattgagaaggaaaaga	13	3	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31314310	T	T	31314310	3	4	41	1	0	0	0	0	1	0	0	0	1072	130	5	5	1051	5	ASXL3	18	31314310	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1341167	31314310	46762938	581	48553											
MAPRE2	10982	broad.mit.edu	37	chr18	32682116	32682116	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcaccatgcaaactccccCacagcaggtattgtcacaat	5	15	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32682116	T	T	32682116	2	4	41	1	0	0	0	0	0	0	0	1	9387	581	21	4		4	MAPRE2	18	32682116	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1367806	32682116	45395132	582	48554											
FHOD3	80206	broad.mit.edu	37	chr18	34289391	34289391	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcagtcggcatgtgccaGggaggcctggggtgcagggg	20	8	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34289391	T	T	34289391	1	4	41	0	1	0	0	0	0	0	0	0	5940	1015	35	2		2	FHOD3	18	34289391	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1607275	34289391	43787857	583	48555											
RIT2	6014	broad.mit.edu	37	chr18	40503566	40503566	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttccagatcaattttgtTacccaccagcaccaggggaa	8	12	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40503566	A	A	40503566	3	1	41	1	0	0	0	0	1	0	0	0	13498	1754	61	5	264	5	RIT2	18	40503566	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	6214175	40503566	37573682	584	48556											
ATP5A1	498	broad.mit.edu	37	chr18	43668274	43668274	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaaacttaaaaggacttcCctgtgggggaaagaaagaga	11	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43668274	T	T	43668274	1	4	41	0	1	0	0	0	0	0	0	0	1151	638	22	4		4	ATP5A1	18	43668274	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3164708	43668274	34408974	585	48557											
DCC	1630	broad.mit.edu	37	chr18	50278793	50278793	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctccttcctctcttcttcTtattcatttttggggatgag	6	11	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50278793	A	A	50278793	1	1	41	0	1	0	0	0	0	0	0	0	4315	1624	56	5		5	DCC	18	50278793	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	6610519	50278793	27798455	586	48558											
DCC	1630	broad.mit.edu	37	chr18	50589841	50589841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatagtggtaattattttGtttcatatttgttttataat	6	2	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50589841	T	T	50589841	1	4	41	0	1	0	0	0	0	0	0	0	4315	1392	48	3		3	DCC	18	50589841	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	311048	50589841	27487407	587	48559											
TCF4	6925	broad.mit.edu	37	chr18	52928766	52928766	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccccgcttcctctatttgcTgcaaaaacaaaaggcagaat	7	12	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52928766	A	A	52928766	5	1	41	1	0	0	0	0	0	0	1	0	15817	1594	55	5	1126	5	TCF4	18	52928766	Splice_Site	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2338925	52928766	25148482	588	48560											
SERPINB5	5268	broad.mit.edu	37	chr18	61160268	61160268	+	Frame_Shift_Del	DEL	C	-	-													aatgctgcctactttgttggCaagtggatgaagaaattttc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61160268	-	-	61160268	7	5	41	1	0	1	0	1	0	0	0	0	14217	697	25	0	521	0	SERPINB5	18	61160268	Frame_Shift_Del	DEL	C	TCGA-17-Z008-01A-01W-0746-08	8231502	61160268	16916980	589	48561											
CDH7	1005	broad.mit.edu	37	chr18	63511157	63511157	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcagtgacacgacaactgTgaagataattgtggaagatg	12	5	1	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63511157	A	A	63511157	3	1	41	1	0	0	0	0	1	0	0	0	3145	1696	59	5	1113	5	CDH7	18	63511157	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2350889	63511157	14566091	590	48562											
VAV1	7409	broad.mit.edu	37	chr19	6833876	6833876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggcctacaagcccccaGgctgggcataggtagacagg	16	11	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6833876	T	T	6833876	1	4	41	0	1	0	0	0	0	0	0	0	17258	1015	35	2		2	VAV1	19	6833876	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08		6833876	52295107	591	48563											
MCOLN1	57192	broad.mit.edu	37	chr19	7591268	7591268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggcctgtgccctgagGgagatacaccccaaccccca	10	17	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7591268	T	T	7591268	1	4	41	0	1	0	0	0	0	0	0	0	9488	1247	43	2		2	MCOLN1	19	7591268	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	757392	7591268	51537715	592	48564											
PNPLA6	10908	broad.mit.edu	37	chr19	7621333	7621333	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccctgtctggccccttgtCcctagagcatgacttcggtg	11	14	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7621333	A	A	7621333	1	1	41	0	1	0	0	0	0	0	0	0	12264	870	30	3		3	PNPLA6	19	7621333	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	30065	7621333	51507650	593	48565											
FBN3	84467	broad.mit.edu	37	chr19	8148097	8148097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaaggtggccaggctgGgccaagggtgcaggtgcaga	18	9	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8148097	T	T	8148097	1	4	41	0	1	0	0	0	0	0	0	0	5761	1247	43	2		2	FBN3	19	8148097	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	526764	8148097	50980886	594	48566											
C19orf66	55337	broad.mit.edu	37	chr19	10200201	10200201	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacctggctctcaataagTgagtggtgctctgtgagctt	11	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10200201	G	G	10200201	1	3	41	0	1	0	0	0	0	0	0	0	1965	1711	59	5		5	C19orf66	19	10200201	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2052104	10200201	48928782	595	48567											
KEAP1	9817	broad.mit.edu	37	chr19	10602596	10602596	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagccgcccgcggtgtagaTcaggcggcccaccttgggcg	16	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602596	A	A	10602596	3	1	41	1	0	0	0	0	1	0	0	0	8211	1435	50	5	908	5	KEAP1	19	10602596	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	402395	10602596	48526387	596	48568											
DNM2	1785	broad.mit.edu	37	chr19	10904361	10904361	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagagtagtgtggaaacctCcgttttgatgcttgcttttt	10	8	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10904361	T	T	10904361	1	4	41	0	1	0	0	0	0	0	0	0	4712	870	30	4		4	DNM2	19	10904361	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	301765	10904361	48224622	597	48569											
ZNF20	7568	broad.mit.edu	37	chr19	12243846	12243846	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccactgtgcgtcctttcAtgaatttgaagttgtgaagc	9	9	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12243846	G	G	12243846	2	3	41	1	0	0	0	0	0	0	0	1	17887	214	8	5		5	ZNF20	19	12243846	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1339485	12243846	46885137	598	48570											
CLEC17A	388512	broad.mit.edu	37	chr19	14710639	14710639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaggtaagtgagacttgGggaattgcccagggatgggg	17	4	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14710639	T	T	14710639	1	4	41	0	1	0	0	0	0	0	0	0	3533	1247	43	2		2	CLEC17A	19	14710639	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2466793	14710639	44418344	599	48571											
CYP4F3	4051	broad.mit.edu	37	chr19	15760590	15760590	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcatgctgatccccatccTgcatctgaggggccatctgt	9	13	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15760590	A	A	15760590	1	1	41	0	1	0	0	0	0	0	0	0	4223	1595	55	5		5	CYP4F3	19	15760590	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	1049951	15760590	43368393	600	48572											
SF4	57794	broad.mit.edu	37	chr19	19390997	19390999	+	In_Frame_Del	DEL	CTG	-	-													tgtccccgcagtcttacctcCtgctgctccttcagctgctt							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19390999	-	-	19390997	7	5	41	1	0	1	0	1	0	0	0	0	14268	680	24	0	614	0	SF4	19	19390997	In_Frame_Del	DEL	CTG	TCGA-17-Z008-01A-01W-0746-08	3630407	19390997	39737986	601	48573											
ZNF536	9745	broad.mit.edu	37	chr19	30934691	30934691	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacgtgcccatgagcggCcagcccatgggcagtcagat	13	15	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30934691	A	A	30934691	2	1	41	1	0	0	0	0	0	0	0	1	18101	726	26	3		3	ZNF536	19	30934691	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	11543694	30934691	28194292	602	48574											
ZNF536	9745	broad.mit.edu	37	chr19	31040367	31040367	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggcttagcagcctttaacGgacttgcaagtagcacagca	10	10	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31040367	C	C	31040367	3	2	41	1	0	0	0	0	1	0	0	0	18101	1117	39	4	3851	4	ZNF536	19	31040367	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	105676	31040367	28088616	603	48575											
TSHZ3	57616	broad.mit.edu	37	chr19	31781351	31781351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttagctaaacacacaCtggggggtaccaatatgctt	12	9	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31781351	A	A	31781351	1	1	41	0	1	0	0	0	0	0	0	0	16750	580	20	3		3	TSHZ3	19	31781351	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	740984	31781351	27347632	604	48576											
GPATCH1	55094	broad.mit.edu	37	chr19	33587217	33587217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcatggtctagcttacaaGggcctggatccccaccaggc	12	13	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33587217	T	T	33587217	3	4	41	1	0	0	0	0	1	0	0	0	6655	991	35	2	743	2	GPATCH1	19	33587217	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1805866	33587217	25541766	605	48577											
GPATCH1	55094	broad.mit.edu	37	chr19	33620948	33620948	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgctgctgtgatatggggAggcctggcattctcagcctc	13	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33620948	G	G	33620948	1	3	41	0	1	0	0	0	0	0	0	0	6655	319	11	5		5	GPATCH1	19	33620948	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	33731	33620948	25508035	606	48578											
ZNF599	148103	broad.mit.edu	37	chr19	35250996	35250996	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgacatcagccatataaCgacaggctttcccacactca	6	13	2	1	rs149040820	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35250996	T	T	35250996	3	4	41	1	0	0	0	0	1	0	0	0	18156	536	19	4	1060	4	ZNF599	19	35250996	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1630048	35250996	23877987	607	48579											
FFAR3	2865	broad.mit.edu	37	chr19	35850556	35850556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatatctgcggtgaaagccCggcgtggaggatctacgtga	14	9	2	2	rs148946992		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35850556	A	A	35850556	3	1	41	1	0	0	0	0	1	0	0	0	5886	652	23	1	766	1	FFAR3	19	35850556	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	599560	35850556	23278427	608	48580											
KIRREL2	84063	broad.mit.edu	37	chr19	36349405	36349405	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatgaagcatcatatgaaTgtcaggctacacaagcaggc	11	8	2	2	rs117351170	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36349405	A	A	36349405	3	1	41	1	0	0	0	0	1	0	0	0	8396	1464	51	5	317	5	KIRREL2	19	36349405	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	498849	36349405	22779578	609	48581											
TYROBP	7305	broad.mit.edu	37	chr19	36399150	36399150	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagccggatgctgctggaCaccacagtgtaagggccggt	15	10	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36399150	A	A	36399150	1	1	41	0	1	0	0	0	0	0	0	0	16941	493	17	3		3	TYROBP	19	36399150	5'UTR	SNP	C	TCGA-17-Z008-01A-01W-0746-08	49745	36399150	22729833	610	48582											
ZNF585A	199704	broad.mit.edu	37	chr19	37643330	37643330	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaacatatataagatttctCtcctgtatgagttttctgat	7	6	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37643330	A	A	37643330	4	1	41	1	0	0	0	0	0	1	0	0	18144	922	32	3	842	3	ZNF585A	19	37643330	Nonsense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1244180	37643330	21485653	611	48583											
ZNF585A	199704	broad.mit.edu	37	chr19	37646803	37646803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctctcaccctgcagtgCccatggttcctttccttgct	8	16	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37646803	A	A	37646803	3	1	41	1	0	0	0	0	1	0	0	0	18144	739	26	3	2061	3	ZNF585A	19	37646803	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3473	37646803	21482180	612	48584											
ZNF570	148268	broad.mit.edu	37	chr19	37974825	37974825	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaattaaccccaaagcagGatttttatgaagaacatcaa	6	7	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37974825	A	A	37974825	3	1	41	1	0	0	0	0	1	0	0	0	18129	1174	41	4	315	4	ZNF570	19	37974825	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	328022	37974825	21154158	613	48585											
CAPN12	147968	broad.mit.edu	37	chr19	39234908	39234908	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtggggtctttaggcaatGaggagccttccctcgttaat	12	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39234908	A	A	39234908	1	1	41	0	1	0	0	0	0	0	0	0	2651	1305	45	4		4	CAPN12	19	39234908	5'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1260083	39234908	19894075	614	48586											
PSG1	5669	broad.mit.edu	37	chr19	43372657	43372658	+	Intron	DNP	GG	TT	TT													ttcactgagccgaatcctgaGgtattcccctgtttctccca							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43372658	TT	TT	43372657	1	4	41	0	1	0	0	0	0	0	0	0	12759	1015	35	2		2	PSG1	19	43372657	Intron	DNP	GG	TCGA-17-Z008-01A-01W-0746-08	4137749	43372657	15756326	615	48587											
PSG4	5672	broad.mit.edu	37	chr19	43698423	43698423	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaataaaaatgttttcctCactcttccctgaatgccaga	7	10	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43698423	A	A	43698423	1	1	41	0	1	0	0	0	0	0	0	0	12763	841	29	3		3	PSG4	19	43698423	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	325766	43698423	15430560	616	48588											
PSG9	5678	broad.mit.edu	37	chr19	43770526	43770526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaattcagtctctaaagaGgttttggatcattcatttct	7	7	5	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43770526	T	T	43770526	1	4	41	0	1	0	0	0	0	0	0	0	12768	1015	35	2		2	PSG9	19	43770526	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	72103	43770526	15358457	617	48589											
TEX101	83639	broad.mit.edu	37	chr19	43920394	43920394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatactaataattaaagcaGgtgaaatgagatggggcatt	10	5	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43920394	T	T	43920394	3	4	41	1	0	0	0	0	1	0	0	0	15895	1014	35	2	272	2	TEX101	19	43920394	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	149868	43920394	15208589	618	48590											
PPM1N	147699	broad.mit.edu	37	chr19	46002480	46002480	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggccccccgagctacagctCgtttctgcggagccagaggt	13	14	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46002480	G	G	46002480	2	3	41	1	0	0	0	0	0	0	0	1	12447	871	31	4		4	PPM1N	19	46002480	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2082086	46002480	13126503	619	48591											
GIPR	2696	broad.mit.edu	37	chr19	46180810	46180810	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggttgtgttccagggcaatCggcaaggggagggggtgggg	22	5	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46180810	A	A	46180810	1	1	41	0	1	0	0	0	0	0	0	0	6459	899	31	3		3	GIPR	19	46180810	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	178330	46180810	12948173	620	48592											
PPFIA3	8541	broad.mit.edu	37	chr19	49641551	49641551	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcttggactcgttgggccGctaccgcagcagctgctccc	13	15	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49641551	A	A	49641551	3	1	41	1	0	0	0	0	1	0	0	0	12407	1087	38	4	2001	4	PPFIA3	19	49641551	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3460741	49641551	9487432	621	48593											
ALDH16A1	126133	broad.mit.edu	37	chr19	49972188	49972188	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccgggaccatctgacccGctgcctggccttgcaccaag	11	16	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49972188	A	A	49972188	3	1	41	1	0	0	0	0	1	0	0	0	488	1087	38	4	2254	4	ALDH16A1	19	49972188	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	330637	49972188	9156795	622	48594											
C19orf63	284361	broad.mit.edu	37	chr19	50985350	50985350	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgcccacactcacctcCttcccctctctctctctttc	3	20	4	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50985350	T	T	50985350	1	4	41	0	1	0	0	0	0	0	0	0	1964	696	24	4		4	C19orf63	19	50985350	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1013162	50985350	8143633	623	48595											
C19orf75	284369	broad.mit.edu	37	chr19	51770969	51770969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagaggagaaggatgaaaGttaagagaaacaatttaaag	12	2	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51770969	T	T	51770969	1	4	41	0	1	0	0	0	0	0	0	0	1969	1044	36	3		3	C19orf75	19	51770969	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	785619	51770969	7358014	624	48596											
LIM2	3982	broad.mit.edu	37	chr19	51890651	51890651	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggccaccaccaggaggatgGtccccacccaggcacagaac	11	16	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51890651	C	C	51890651	3	2	41	1	0	0	0	0	1	0	0	0	8867	1261	44	4	616	4	LIM2	19	51890651	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	119682	51890651	7238332	625	48597											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918955	51918955	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctggacactgaggtggggGaagtgggtgggatagaaggg	21	4	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51918955	C	C	51918955	1	2	41	0	1	0	0	0	0	0	0	0	14419	1189	41	4		4	SIGLEC10	19	51918955	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	28304	51918955	7210028	626	48598											
BIRC8	112401	broad.mit.edu	37	chr19	53793596	53793596	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagtacatccatgtcccaAaagtaatgagccgggcttca	10	11	1	1	rs144639389	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53793596	G	G	53793596	3	3	41	1	0	0	0	0	1	0	0	0	1446	14	1	5	682	5	BIRC8	19	53793596	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	1874641	53793596	5335387	627	48599											
PRKCG	5582	broad.mit.edu	37	chr19	54385787	54385787	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtaggcgattcagagggGggaccccggcccctgttttg	17	11	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54385787	T	T	54385787	2	4	41	1	0	0	0	0	0	0	0	1	12618	1219	43	2		2	PRKCG	19	54385787	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	592191	54385787	4743196	628	48600											
KIR2DL1	3802	broad.mit.edu	37	chr19	55285230	55285230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtctgtgccaacagagaCagagaaacaggagacacaag	13	8	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55285230	A	A	55285230	1	1	41	0	1	0	0	0	0	0	0	0	8387	493	17	3		3	KIR2DL1	19	55285230	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	899443	55285230	3843753	629	48601											
NLRP5	126206	broad.mit.edu	37	chr19	56538701	56538701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacggtttcgatgacctgGgctctgtcctcaacaatgac	10	11	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56538701	T	T	56538701	3	4	41	1	0	0	0	0	1	0	0	0	10575	1232	43	2	1128	2	NLRP5	19	56538701	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1253471	56538701	2590282	630	48602											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56758181	56758181	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgctgacacaccttctgCctgcgttgtggagagagaag	14	9	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56758181	T	T	56758181	1	4	41	0	1	0	0	0	0	0	0	0	18367	754	26	4		4	ZSCAN5A	19	56758181	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	219480	56758181	2370802	631	48603											
CSNK2A1	1457	broad.mit.edu	37	chr20	480642	480642	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttcagagtatttcaacaCgtagtgtaatacataaatga	6	5	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	480642	T	T	480642	1	4	41	0	1	0	0	0	0	0	0	0	3991	551	19	4		4	CSNK2A1	20	480642	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08		480642	62544878	632	48604											
TMC2	117532	broad.mit.edu	37	chr20	2594031	2594031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actatcttctttgatacttaTagccagatgcattcttgggc	7	9	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2594031	C	C	2594031	1	2	41	0	1	0	0	0	0	0	0	0	16108	1421	49	5		5	TMC2	20	2594031	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2113389	2594031	60431489	633	48605											
OTOR	56914	broad.mit.edu	37	chr20	16729156	16729156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtgcagatgatgagtGtgtctgtaaggactttttta	12	5	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16729156	T	T	16729156	3	4	41	1	0	0	0	0	1	0	0	0	11402	1377	48	3	112	3	OTOR	20	16729156	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	14135125	16729156	46296364	634	48606											
C20orf26	26074	broad.mit.edu	37	chr20	20234253	20234253	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcactctttttgggccactGaccctgtgtccagtcccact	8	15	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20234253	T	T	20234253	1	4	41	0	1	0	0	0	0	0	0	0	2128	1305	45	3		3	C20orf26	20	20234253	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3505097	20234253	42791267	635	48607											
HCK	3055	broad.mit.edu	37	chr20	30662513	30662513	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcccgcgttgactctctGgagacagaggagtaagtatc	13	10	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30662513	T	T	30662513	2	4	41	1	0	0	0	0	0	0	0	1	7060	1335	47	2		2	HCK	20	30662513	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	10428260	30662513	32363007	636	48608											
EIF6	3692	broad.mit.edu	37	chr20	33867282	33867282	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacaaactggtaggctcCcattctagatgacatctttt	7	10	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33867282	T	T	33867282	1	4	41	0	1	0	0	0	0	0	0	0	5087	638	22	4		4	EIF6	20	33867282	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3204769	33867282	29158238	637	48609											
ZHX3	23051	broad.mit.edu	37	chr20	39831710	39831710	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcaggggctctctccttgTatttggttggtgtgaagtca	13	8	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39831710	C	C	39831710	3	2	41	1	0	0	0	0	1	0	0	0	17803	1638	57	5	1031	5	ZHX3	20	39831710	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	5964428	39831710	23193810	638	48610											
CHD6	84181	broad.mit.edu	37	chr20	40066017	40066017	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacatactacctaggtccCccttatccacagtttcagtt	4	14	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40066017	T	T	40066017	1	4	41	0	1	0	0	0	0	0	0	0	3360	638	22	4		4	CHD6	20	40066017	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	234307	40066017	22959503	639	48611											
TOX2	84969	broad.mit.edu	37	chr20	42680197	42680197	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catttcaaggtatgtgcggtGgaggaacagagcctgaagct	14	7	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42680197	C	C	42680197	1	2	41	0	1	0	0	0	0	0	0	0	16502	1363	47	4		4	TOX2	20	42680197	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2614180	42680197	20345323	640	48612											
UBE2C	11065	broad.mit.edu	37	chr20	44444099	44444099	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagaaactcaagattctaGcaagccccttgtgtggggct	11	10	2	2	rs78668952	byFrequency;by1000genomes	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44444099	C	C	44444099	1	2	41	0	1	0	0	0	0	0	0	0	16972	971	34	4		4	UBE2C	20	44444099	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1763902	44444099	18581421	641	48613											
NCOA3	8202	broad.mit.edu	37	chr20	46264353	46264353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaacatgagtagcccccCacatgggagtcctggtcttg	11	13	2	1	rs140702870	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46264353	A	A	46264353	3	1	41	1	0	0	0	0	1	0	0	0	10325	594	21	2	1464	2	NCOA3	20	46264353	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1820254	46264353	16761167	642	48614											
SLC9A8	23315	broad.mit.edu	37	chr20	48494620	48494620	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaagtattttccttttttTttttaaatttaattacttat	2	3	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48494620	G	G	48494620	1	3	41	0	1	0	0	0	0	0	0	0	14834	1856	64	5		5	SLC9A8	20	48494620	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2230267	48494620	14530900	643	48615											
MOCS3	27304	broad.mit.edu	37	chr20	49576528	49576528	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttggaacgcagggatgcGgagagcctgaaactcttaaa	12	8	1	2	rs138841225	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49576528	A	A	49576528	2	1	41	1	0	0	0	0	0	0	0	1	9786	1103	39	4		4	MOCS3	20	49576528	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1081908	49576528	13448992	644	48616											
MOCS3	27304	broad.mit.edu	37	chr20	49576693	49576693	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagagttagaccctttaacAgttcgggatgttgtgggggg	15	6	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49576693	T	T	49576693	2	4	41	1	0	0	0	0	0	0	0	1	9786	175	7	5		5	MOCS3	20	49576693	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	165	49576693	13448827	645	48617											
KCNG1	3755	broad.mit.edu	37	chr20	49626891	49626891	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcattttgggccttcacatCcctctcgggcctgtggggag	13	12	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49626891	T	T	49626891	1	4	41	0	1	0	0	0	0	0	0	0	8097	870	30	4		4	KCNG1	20	49626891	5'UTR	SNP	C	TCGA-17-Z008-01A-01W-0746-08	50198	49626891	13398629	646	48618											
TSHZ2	128553	broad.mit.edu	37	chr20	51869911	51869911	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgtgtccactgctcaCagtgcataaaaatgtagatt	7	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51869911	T	T	51869911	1	4	41	0	1	0	0	0	0	0	0	0	16749	493	17	4		4	TSHZ2	20	51869911	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2243020	51869911	11155609	647	48619											
BCAS1	8537	broad.mit.edu	37	chr20	52601943	52601943	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccccgatgggttgcatccTttggaattcttgccagcccc	10	14	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52601943	A	A	52601943	3	1	41	1	0	0	0	0	1	0	0	0	1355	1606	56	5	755	5	BCAS1	20	52601943	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	732032	52601943	10423577	648	48620											
CBLN4	140689	broad.mit.edu	37	chr20	54573508	54573508	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagaatccatatccacccatGagaaaccaataaaagacatc	4	11	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54573508	T	T	54573508	1	4	41	0	1	0	0	0	0	0	0	0	2733	1305	45	3		3	CBLN4	20	54573508	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1971565	54573508	8452012	649	48621											
ZNF831	128611	broad.mit.edu	37	chr20	57769437	57769437	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagggcccctggtgggCcccgacccgtgttcccccct	11	19	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57769437	T	T	57769437	2	4	41	1	0	0	0	0	0	0	0	1	18314	726	26	4		4	ZNF831	20	57769437	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3195929	57769437	5256083	650	48622											
DIDO1	11083	broad.mit.edu	37	chr20	61511020	61511020	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcctccagcggcttctcTttgggccccacgtcaaaccg	10	17	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61511020	G	G	61511020	3	3	41	1	0	0	0	0	1	0	0	0	4562	1606	56	5	438	5	DIDO1	20	61511020	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	3741583	61511020	1514500	651	48623											
TPTE	7179	broad.mit.edu	37	chr21	10916509	10916509	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatcttcctttaagtggaGatgaaaagtctaaagtcggc	10	6	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10916509	T	T	10916509	1	4	41	0	1	0	0	0	0	0	0	0	16554	957	33	3		3	TPTE	21	10916509	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08		10916509	37213386	652	48624											
TPTE	7179	broad.mit.edu	37	chr21	10934930	10934930	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcacaatatagagtaatgTacatactgcatagattgtag	8	5	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10934930	C	C	10934930	1	2	41	0	1	0	0	0	0	0	0	0	16554	1653	57	5		5	TPTE	21	10934930	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	18421	10934930	37194965	653	48625											
BAGE2	85319	broad.mit.edu	37	chr21	11077866	11077866	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatggaccaggtcattagaGggctttgatggatatgttca	12	6	2	2	rs77003513		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11077866	A	A	11077866	1	1	41	0	1	0	0	0	0	0	0	0	1297	1015	35	4		4	BAGE2	21	11077866	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	142936	11077866	37052029	654	48626											
NCAM2	4685	broad.mit.edu	37	chr21	22841152	22841152	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctaggttttttcaaattaAattgagttgcactgaattta	7	4	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22841152	T	T	22841152	1	4	41	0	1	0	0	0	0	0	0	0	10298	29	1	5		5	NCAM2	21	22841152	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	11763286	22841152	25288743	655	48627											
ADAMTS5	11096	broad.mit.edu	37	chr21	28304421	28304421	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcatatttgggaacccattCcacaaaagttttgactcctt	6	10	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28304421	T	T	28304421	3	4	41	1	0	0	0	0	1	0	0	0	269	864	30	4	853	4	ADAMTS5	21	28304421	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5463269	28304421	19825474	656	48628											
DOPEY2	9980	broad.mit.edu	37	chr21	37652556	37652556	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcatccactgcaaatttaAttgattttgctttctttaat	3	7	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37652556	T	T	37652556	1	4	41	0	1	0	0	0	0	0	0	0	4748	116	4	5		5	DOPEY2	21	37652556	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	9348135	37652556	10477339	657	48629											
BRWD1	54014	broad.mit.edu	37	chr21	40569063	40569063	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtacacttccttcacaatCactcaatttcttcttagctg	3	12	5	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40569063	A	A	40569063	3	1	41	1	0	0	0	0	1	0	0	0	1534	826	29	3	1277	3	BRWD1	21	40569063	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2916507	40569063	7560832	658	48630											
UMODL1	89766	broad.mit.edu	37	chr21	43524055	43524055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagatcgtgtctctccaGgcgggaagtgtggtcgtgag	16	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43524055	T	T	43524055	3	4	41	1	0	0	0	0	1	0	0	0	17106	991	35	2	1411	2	UMODL1	21	43524055	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2954992	43524055	4605840	659	48631											
UBASH3A	53347	broad.mit.edu	37	chr21	43846996	43846996	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactttgtattaacttcacGgtggacacagcttcgtaggt	9	9	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43846996	A	A	43846996	1	1	41	0	1	0	0	0	0	0	0	0	16965	1131	39	4		4	UBASH3A	21	43846996	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	322941	43846996	4282899	660	48632											
CCT8L2	150160	broad.mit.edu	37	chr22	17072667	17072667	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggactagaaagacgggcCgttgctggtgcatttggatg	16	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17072667	A	A	17072667	2	1	41	1	0	0	0	0	0	0	0	1	2991	639	23	1		1	CCT8L2	22	17072667	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08		17072667	34231899	661	48633											
ZNF280A	129025	broad.mit.edu	37	chr22	22869426	22869426	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtttaacccttttggaatCtctgctgtttatatctgaag	8	7	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22869426	G	G	22869426	3	3	41	1	0	0	0	0	1	0	0	0	17940	913	32	4	1103	4	ZNF280A	22	22869426	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5796759	22869426	28435140	662	48634											
MYO18B	84700	broad.mit.edu	37	chr22	26239765	26239765	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattttccaccagttgggatGggaccctgtgcggtacgacc	13	11	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26239765	A	A	26239765	4	1	41	1	0	0	0	0	0	1	0	0	10160	1357	47	4	3338	4	MYO18B	22	26239765	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3370339	26239765	25064801	663	48635											
HPS4	89781	broad.mit.edu	37	chr22	26859981	26859982	+	Missense_Mutation	DNP	CG	AA	AA													agtgtagagattcatcctcaCgagccccatgcaggactctg					rs116241923		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26859982	AA	AA	26859981	3	1	41	1	0	0	0	0	1	0	0	0	7408	536	19	3	527	3	HPS4	22	26859981	Missense_Mutation	DNP	CG	TCGA-17-Z008-01A-01W-0746-08	620216	26859981	24444585	664	48636											
ZMAT5	55954	broad.mit.edu	37	chr22	30134464	30134464	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacaaaggcaagtgagggGtacactcctgcctgccagaa	13	10	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30134464	A	A	30134464	1	1	41	0	1	0	0	0	0	0	0	0	17821	1276	44	4		4	ZMAT5	22	30134464	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3274483	30134464	21170102	665	48637											
SLC5A1	6523	broad.mit.edu	37	chr22	32473201	32473201	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccctttccctctttccttCcttctttccttccttccttc	0	20	2	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32473201	A	A	32473201	1	1	41	0	1	0	0	0	0	0	0	0	14775	870	30	3		3	SLC5A1	22	32473201	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	2338737	32473201	18831365	666	48638											
CACNG2	10369	broad.mit.edu	37	chr22	36976106	36976106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgctgaatgctcactgGgttcggggcaggtgcgaatt	15	9	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36976106	T	T	36976106	1	4	41	0	1	0	0	0	0	0	0	0	2583	1247	43	2		2	CACNG2	22	36976106	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4502905	36976106	14328460	667	48639											
NPTXR	23467	broad.mit.edu	37	chr22	39222545	39222545	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgggctcatggcccgccTctagcagtacaatctcgttg	10	14	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39222545	A	A	39222545	3	1	41	1	0	0	0	0	1	0	0	0	10699	1551	54	5	456	5	NPTXR	22	39222545	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	2246439	39222545	12082021	668	48640											
PHF21B	112885	broad.mit.edu	37	chr22	45278884	45278884	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaaattcatagtgtttatGaattaaggccgacagaaccc	8	8	1	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45278884	T	T	45278884	1	4	41	0	1	0	0	0	0	0	0	0	11929	1305	45	3		3	PHF21B	22	45278884	3'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	6056339	45278884	6025682	669	48641											
GTSE1	51512	broad.mit.edu	37	chr22	46719141	46719141	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgggcacagcggccgcagtCgtgcacgtcagttggcaggt	17	12	1	0	rs145754460	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46719141	T	T	46719141	3	4	41	1	0	0	0	0	1	0	0	0	6950	893	31	4	1513	4	GTSE1	22	46719141	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1440257	46719141	4585425	670	48642											
PPP2R3B	28227	broad.mit.edu	37	chrX	322287	322287	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtcggaatgctttggctCgtggccgggggcagaggctc	18	9	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	322287	A	A	322287	2	1	41	1	0	0	0	0	0	0	0	1	12490	871	31	3		3	PPP2R3B	23	322287	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08		322287	154948273	671	48643											
ARSH	347527	broad.mit.edu	37	chrX	2930968	2930968	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtacagccagaaagcaacAgaaaacttggggaagaatgg	12	7	0	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2930968	T	T	2930968	1	4	41	0	1	0	0	0	0	0	0	0	997	203	7	5		5	ARSH	23	2930968	Intron	SNP	A	TCGA-17-Z008-01A-01W-0746-08	2608681	2930968	152339592	672	48644											
ARSF	416	broad.mit.edu	37	chrX	3002452	3002452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagtcagctctggctctGtgtgcagctagttgccattg	13	9	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3002452	T	T	3002452	3	4	41	1	0	0	0	0	1	0	0	0	995	1377	48	3	593	3	ARSF	23	3002452	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	71484	3002452	152268108	673	48645											
GLRA2	2742	broad.mit.edu	37	chrX	14625189	14625189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtttgtttctttacatGggtagactttcaagctttct	7	7	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14625189	T	T	14625189	1	4	41	0	1	0	0	0	0	0	0	0	6519	1363	47	2		2	GLRA2	23	14625189	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	11622737	14625189	140645371	674	48646											
GLRA2	2742	broad.mit.edu	37	chrX	14675736	14675736	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtggcattaattttgttgCtctcttgcttcttgaaccat	8	8	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14675736	T	T	14675736	1	4	41	0	1	0	0	0	0	0	0	0	6519	812	28	4		4	GLRA2	23	14675736	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	50547	14675736	140594824	675	48647											
CTPS2	56474	broad.mit.edu	37	chrX	16656934	16656934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgtggattcaaaagaaCtgagtgtgaatcagtccaag	11	6	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16656934	A	A	16656934	1	1	41	0	1	0	0	0	0	0	0	0	4057	580	20	3		3	CTPS2	23	16656934	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1981198	16656934	138613626	676	48648											
CTPS2	56474	broad.mit.edu	37	chrX	16669442	16669442	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagctctcagaaaacaaGggccaagccttctatccctc	8	14	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16669442	T	T	16669442	1	4	41	0	1	0	0	0	0	0	0	0	4057	1015	35	2		2	CTPS2	23	16669442	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	12508	16669442	138601118	677	48649											
NHS	4810	broad.mit.edu	37	chrX	17745613	17745613	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggtcgaatcctccaccGtcccttgcaattacaccaac	6	16	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17745613	C	C	17745613	2	2	41	1	0	0	0	0	0	0	0	1	10506	1132	40	4		4	NHS	23	17745613	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1076171	17745613	137524947	678	48650											
MAGEB2	4113	broad.mit.edu	37	chrX	30236757	30236757	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacgccgcaaggcccgagaTgagacccggggtctcaatgt	13	12	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30236757	A	A	30236757	3	1	41	1	0	0	0	0	1	0	0	0	9268	1461	51	5	62	5	MAGEB2	23	30236757	Missense_Mutation	SNP	T	TCGA-17-Z008-01A-01W-0746-08	12491144	30236757	125033803	679	48651											
FAM47B	170062	broad.mit.edu	37	chrX	34961712	34961712	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtggatcctcccgagactgGagtgtcccatctctgcccag	11	15	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34961712	A	A	34961712	3	1	41	1	0	0	0	0	1	0	0	0	5621	1174	41	4	766	4	FAM47B	23	34961712	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4724955	34961712	120308848	680	48652											
CXorf59	286464	broad.mit.edu	37	chrX	36156177	36156177	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctattgcccattcttggtaaGagtcgtttttatgcataatg	8	7	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36156177	A	A	36156177	1	1	41	0	1	0	0	0	0	0	0	0	4148	957	33	4		4	CXorf59	23	36156177	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1194465	36156177	119114383	681	48653											
MAOA	4128	broad.mit.edu	37	chrX	43571958	43571958	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctttctctacagattccaActgatgcaccctgggaggct	8	13	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43571958	T	T	43571958	3	4	41	1	0	0	0	0	1	0	0	0	9317	43	2	5	436	5	MAOA	23	43571958	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	7415781	43571958	111698602	682	48654											
SLC38A5	92745	broad.mit.edu	37	chrX	48319079	48319079	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggtcaccgcgagcagcaCggccaggcgcacacagagga	16	13	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48319079	T	T	48319079	3	4	41	1	0	0	0	0	1	0	0	0	14721	536	19	4	410	4	SLC38A5	23	48319079	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	4747121	48319079	106951481	683	48655											
ERAS	3266	broad.mit.edu	37	chrX	48688026	48688026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggagatgctcatgccGctgctgcagccctcgcacac	11	16	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48688026	T	T	48688026	3	4	41	1	0	0	0	0	1	0	0	0	5247	1087	38	3	495	3	ERAS	23	48688026	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	368947	48688026	106582534	684	48656											
CACNA1F	778	broad.mit.edu	37	chrX	49084604	49084604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatggcatcttgcatctGgggagagaaaaggcatgcat	12	10	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49084604	T	T	49084604	1	4	41	0	1	0	0	0	0	0	0	0	2569	1363	47	2		2	CACNA1F	23	49084604	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	396578	49084604	106185956	685	48657											
HUWE1	10075	broad.mit.edu	37	chrX	53629544	53629544	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatctttttccgccctgGgtcgtacctgccttctcatc	7	16	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53629544	T	T	53629544	2	4	41	1	0	0	0	0	0	0	0	1	7531	1219	43	2		2	HUWE1	23	53629544	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4544940	53629544	101641016	686	48658											
MTMR8	55613	broad.mit.edu	37	chrX	63551365	63551365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgctatgccaaattcaGggtggtaggtacattctttt	10	7	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63551365	T	T	63551365	1	4	41	0	1	0	0	0	0	0	0	0	10043	1015	35	2		2	MTMR8	23	63551365	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	9921821	63551365	91719195	687	48659											
MTMR8	55613	broad.mit.edu	37	chrX	63568698	63568698	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggaaaaggtgtgtcagtTgagtgattatattcacaaat	10	3	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63568698	G	G	63568698	1	3	41	0	1	0	0	0	0	0	0	0	10043	1827	63	5		5	MTMR8	23	63568698	Intron	SNP	T	TCGA-17-Z008-01A-01W-0746-08	17333	63568698	91701862	688	48660											
LAS1L	81887	broad.mit.edu	37	chrX	64751152	64751152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgactccaggtggagacCctcctgcctatccctctacc	7	18	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64751152	A	A	64751152	1	1	41	0	1	0	0	0	0	0	0	0	8708	638	22	2		2	LAS1L	23	64751152	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1182454	64751152	90519408	689	48661											
VSIG4	11326	broad.mit.edu	37	chrX	65253413	65253413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagtggctccggtcatcCatctccagggtgctcaattg	12	11	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65253413	A	A	65253413	3	1	41	1	0	0	0	0	1	0	0	0	17352	594	21	2	916	2	VSIG4	23	65253413	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	502261	65253413	90017147	690	48662											
P2RY4	5030	broad.mit.edu	37	chrX	69479509	69479509	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaggggagaagtgaggGtggcaggatttccctgccca	18	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69479509	T	T	69479509	1	4	41	0	1	0	0	0	0	0	0	0	11447	1276	44	3		3	P2RY4	23	69479509	5'UTR	SNP	G	TCGA-17-Z008-01A-01W-0746-08	4226096	69479509	85791051	691	48663											
OGT	8473	broad.mit.edu	37	chrX	70767661	70767661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgatatcaccttcttccCcccctccccccaatcttttt	1	18	3	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70767661	A	A	70767661	1	1	41	0	1	0	0	0	0	0	0	0	10942	638	22	2		2	OGT	23	70767661	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1288152	70767661	84502899	692	48664											
ERCC6L	54821	broad.mit.edu	37	chrX	71425426	71425426	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggactgatgtcatttttgGgagttgaagcatcaaattgt	12	4	2	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71425426	A	A	71425426	3	1	41	1	0	0	0	0	1	0	0	0	5260	1232	43	4	565	4	ERCC6L	23	71425426	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	657765	71425426	83845134	693	48665											
RLIM	51132	broad.mit.edu	37	chrX	73812627	73812627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcgtgggttttccacttGcctttggctgttgttttcca	10	9	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73812627	T	T	73812627	3	4	41	1	0	0	0	0	1	0	0	0	13501	1328	46	3	1355	3	RLIM	23	73812627	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2387201	73812627	81457933	694	48666											
KIAA2022	340533	broad.mit.edu	37	chrX	73965459	73965459	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccgttggctgaggcaacAatagccttatcttgttggtt	10	9	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73965459	T	T	73965459	2	4	41	1	0	0	0	0	0	0	0	1	8339	126	5	5		5	KIAA2022	23	73965459	Silent	SNP	A	TCGA-17-Z008-01A-01W-0746-08	152832	73965459	81305101	695	48667											
ATRX	546	broad.mit.edu	37	chrX	76764011	76764011	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcatcatgaggtgacccaGtgttgcttgttgataagtca	12	7	2	3			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76764011	A	A	76764011	2	1	41	1	0	0	0	0	0	0	0	1	1212	1020	36	4		4	ATRX	23	76764011	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2798552	76764011	78506549	696	48668											
ATP7A	538	broad.mit.edu	37	chrX	77276686	77276687	+	Intron	DNP	GG	TT	TT													accaggatctttaaaggtttGgagtgggagagtgataagaa							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	77276687	TT	TT	77276686	1	4	41	0	1	0	0	0	0	0	0	0	1194	1363	47	2		2	ATP7A	23	77276686	Intron	DNP	GG	TCGA-17-Z008-01A-01W-0746-08	512675	77276686	77993874	697	48669											
POU3F4	5456	broad.mit.edu	37	chrX	82763391	82763391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacctccctagtccatgCggactctgcgggcatgcagc	10	16	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763391	A	A	82763391	3	1	41	1	0	0	0	0	1	0	0	0	12373	768	27	3	61	3	POU3F4	23	82763391	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5486705	82763391	72507169	698	48670											
DIAPH2	1730	broad.mit.edu	37	chrX	96194204	96194204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgttttaaaaagttaaaCtcctttgttatgaatgagac	6	5	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96194204	A	A	96194204	1	1	41	0	1	0	0	0	0	0	0	0	4559	580	20	3		3	DIAPH2	23	96194204	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	13430813	96194204	59076356	699	48671											
SRPX2	27286	broad.mit.edu	37	chrX	99911873	99911873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtagtgctagttccctccCtcccttccttccttcctttc	5	18	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99911873	A	A	99911873	1	1	41	0	1	0	0	0	0	0	0	0	15283	696	24	2		2	SRPX2	23	99911873	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	3717669	99911873	55358687	700	48672											
ARMCX1	51309	broad.mit.edu	37	chrX	100808037	100808037	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaaatctgggacgaagacGaggagtctacggacacctca	12	9	3	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100808037	T	T	100808037	4	4	41	1	0	0	0	0	0	1	0	0	963	1059	37	3	126	3	ARMCX1	23	100808037	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	896164	100808037	54462523	701	48673											
ARMCX3	51566	broad.mit.edu	37	chrX	100879977	100879977	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggggacgattgcatgggctAcgccaggaaagtaggctggg	18	8	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100879977	G	G	100879977	3	3	41	1	0	0	0	0	1	0	0	0	965	391	14	5	10	5	ARMCX3	23	100879977	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	71940	100879977	54390583	702	48674											
TCEAL2	140597	broad.mit.edu	37	chrX	101381788	101381789	+	5'UTR	DNP	AG	TT	TT													tcccccaggaaaggaaaaggAggggaaatctcgacatggaa							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	101381789	TT	TT	101381788	1	4	41	0	1	0	0	0	0	0	0	0	15793	319	11	5		5	TCEAL2	23	101381788	5'UTR	DNP	AG	TCGA-17-Z008-01A-01W-0746-08	501811	101381788	53888772	703	48675											
RAB40AL	282808	broad.mit.edu	37	chrX	102192374	102192374	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcacggccgagtccccgtAcagtcacctggggggaatcg	15	14	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102192374	T	T	102192374	3	4	41	1	0	0	0	0	1	0	0	0	13048	391	14	5	130	5	RAB40AL	23	102192374	Missense_Mutation	SNP	A	TCGA-17-Z008-01A-01W-0746-08	810586	102192374	53078186	704	48676											
RAB40AL	282808	broad.mit.edu	37	chrX	102192870	102192870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcacacctgtgcatctGgtggacaagctcccgctccc	9	17	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102192870	T	T	102192870	2	4	41	1	0	0	0	0	0	0	0	1	13048	1335	47	2		2	RAB40AL	23	102192870	Silent	SNP	G	TCGA-17-Z008-01A-01W-0746-08	496	102192870	53077690	705	48677											
PLP1	5354	broad.mit.edu	37	chrX	103043497	103043497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaataccatacaaattacaCccatggccttcaattttaag	3	11	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103043497	A	A	103043497	1	1	41	0	1	0	0	0	0	0	0	0	12199	522	18	3		3	PLP1	23	103043497	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	850627	103043497	52227063	706	48678											
TEX13A	56157	broad.mit.edu	37	chrX	104465043	104465043	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggccaccacgttgctatgCcggaacccgctactggggtc	12	14	0	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104465043	A	A	104465043	2	1	41	1	0	0	0	0	0	0	0	1	15898	726	26	3		3	TEX13A	23	104465043	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1421546	104465043	50805517	707	48679											
MORC4	79710	broad.mit.edu	37	chrX	106144914	106144914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacccccaatacccaccCctcaacaaggggtctctctt	5	18	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106144914	A	A	106144914	1	1	41	0	1	0	0	0	0	0	0	0	9798	638	22	2		2	MORC4	23	106144914	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1679871	106144914	49125646	708	48680											
COL4A6	1288	broad.mit.edu	37	chrX	107408699	107408699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggggagaccagcagggcCctggagacctgggaaacctg	16	12	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107408699	A	A	107408699	3	1	41	1	0	0	0	0	1	0	0	0	3727	623	22	2	1395	2	COL4A6	23	107408699	Missense_Mutation	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1263785	107408699	47861861	709	48681											
RGAG1	57529	broad.mit.edu	37	chrX	109697918	109697918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggggaaatccgctgaagGtttttgagcagagaaatgag	16	4	0	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109697918	T	T	109697918	1	4	41	0	1	0	0	0	0	0	0	0	13382	1276	44	3		3	RGAG1	23	109697918	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	2289219	109697918	45572642	710	48682											
TRPC5	7224	broad.mit.edu	37	chrX	111096878	111096878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacaaaggactaccacaCtgcatgggggtggggtgggg	16	9	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111096878	A	A	111096878	1	1	41	0	1	0	0	0	0	0	0	0	16707	580	20	3		3	TRPC5	23	111096878	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	1398960	111096878	44173682	711	48683											
TRPC5	7224	broad.mit.edu	37	chrX	111195610	111195610	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggggatgcggtctctgtaCggtgagtagttgaccttttt	15	6	1	2	rs150908311	byFrequency	TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111195610	T	T	111195610	2	4	41	1	0	0	0	0	0	0	0	1	16707	523	19	4		4	TRPC5	23	111195610	Silent	SNP	C	TCGA-17-Z008-01A-01W-0746-08	98732	111195610	44074950	712	48684											
ZCCHC16	340595	broad.mit.edu	37	chrX	111398833	111398833	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcttttggttttcaaagCtactgtggagctgggaatgg	15	5	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111398833	T	T	111398833	1	4	41	0	1	0	0	0	0	0	0	0	17710	812	28	4		4	ZCCHC16	23	111398833	Intron	SNP	C	TCGA-17-Z008-01A-01W-0746-08	203223	111398833	43871727	713	48685											
KIAA1210	57481	broad.mit.edu	37	chrX	118223759	118223760	+	Intron	DNP	CC	AA	AA													aatatgtgtgactttcacttCctaaaataagaatactgtgc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	118223760	AA	AA	118223759	1	1	41	0	1	0	0	0	0	0	0	0	8284	870	30	3		3	KIAA1210	23	118223759	Intron	DNP	CC	TCGA-17-Z008-01A-01W-0746-08	6824926	118223759	37046801	714	48686											
KIAA1210	57481	broad.mit.edu	37	chrX	118250614	118250614	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttaagggctttaaatttGcatttcttctttcctggaag	7	8	3	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118250614	T	T	118250614	4	4	41	1	0	0	0	0	0	1	0	0	8284	1311	46	3	4678	3	KIAA1210	23	118250614	Nonsense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	26855	118250614	37019946	715	48687											
NKRF	55922	broad.mit.edu	37	chrX	118724465	118724465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggcttcagagctggaGgaaattcataggaggacatg	15	6	2	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118724465	T	T	118724465	3	4	41	1	0	0	0	0	1	0	0	0	10542	1000	35	2	1153	2	NKRF	23	118724465	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	473851	118724465	36546095	716	48688											
NKRF	55922	broad.mit.edu	37	chrX	118725118	118725118	+	Frame_Shift_Del	DEL	G	-	-													tagatgtctcttggcatgctGgcaaaatgtgtttgttcatt							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118725118	-	-	118725118	7	5	41	1	0	1	0	1	0	0	0	0	10542	1335	47	0	1806	0	NKRF	23	118725118	Frame_Shift_Del	DEL	G	TCGA-17-Z008-01A-01W-0746-08	653	118725118	36545442	717	48689											
CUL4B	8450	broad.mit.edu	37	chrX	119694553	119694553	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacgtttatatgcctgcgtGcgtgtaggagagaaggtagc	14	7	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119694553	C	C	119694553	1	2	41	0	1	0	0	0	0	0	0	0	4091	1334	46	4		4	CUL4B	23	119694553	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	969435	119694553	35576007	718	48690											
ODZ1	10178	broad.mit.edu	37	chrX	123556575	123556575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaaaaaaaattggtGtattgtttcccccgtcttat	6	6	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123556575	T	T	123556575	1	4	41	0	1	0	0	0	0	0	0	0	10929	1392	48	3		3	ODZ1	23	123556575	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	3862022	123556575	31713985	719	48691											
ODZ1	10178	broad.mit.edu	37	chrX	123805724	123805725	+	Intron	DNP	TC	CT	CT													tacattaatttattccagacTcactgagaacatctccaagc							TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	123805725	CT	CT	123805724	1	2	41	0	1	0	0	0	0	0	0	0	10929	1566	54	5		5	ODZ1	23	123805724	Intron	DNP	TC	TCGA-17-Z008-01A-01W-0746-08	249149	123805724	31464836	720	48692											
ODZ1	10178	broad.mit.edu	37	chrX	123839100	123839100	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatgtttgaacaggaaatGcctgtgaaaaggaaacacaa	9	7	0	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123839100	A	A	123839100	3	1	41	1	0	0	0	0	1	0	0	0	10929	1333	46	4	7532	4	ODZ1	23	123839100	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	33376	123839100	31431460	721	48693											
GPR119	139760	broad.mit.edu	37	chrX	129519537	129519537	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcacgattctggccttcGctggcagtccaggctggcag	13	13	1	0			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129519537	T	T	129519537	1	4	41	0	1	0	0	0	0	0	0	0	6699	1102	38	3		3	GPR119	23	129519537	5'Flank	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5680437	129519537	25751023	722	48694											
ENOX2	10495	broad.mit.edu	37	chrX	129837404	129837404	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaacacagcttgaactGgcaggaagtcatggaatttg	10	7	1	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129837404	T	T	129837404	1	4	41	0	1	0	0	0	0	0	0	0	5169	1363	47	2		2	ENOX2	23	129837404	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	317867	129837404	25433156	723	48695											
SAGE1	55511	broad.mit.edu	37	chrX	134991604	134991604	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacttccatacgcatgcaGtgtcatgcagggaagaaggt	12	8	1	2			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134991604	A	A	134991604	1	1	41	0	1	0	0	0	0	0	0	0	13920	1044	36	4		4	SAGE1	23	134991604	Intron	SNP	G	TCGA-17-Z008-01A-01W-0746-08	5154200	134991604	20278956	724	48696											
MAGEC1	9947	broad.mit.edu	37	chrX	140991501	140991501	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaggtttggagcacatcCtggaggtgggaaggaaggga	18	4	0	1			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140991501	A	A	140991501	1	1	41	0	1	0	0	0	0	0	0	0	9272	696	24	2		2	MAGEC1	23	140991501	5'Flank	SNP	C	TCGA-17-Z008-01A-01W-0746-08	5999897	140991501	14279059	725	48697											
SPANXN2	494119	broad.mit.edu	37	chrX	142795335	142795335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatccttcagatgagtccaGgtcttcgtcctcctgtgaag	10	11	2	4			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142795335	T	T	142795335	3	4	41	1	0	0	0	0	1	0	0	0	15107	991	35	2	203	2	SPANXN2	23	142795335	Missense_Mutation	SNP	G	TCGA-17-Z008-01A-01W-0746-08	1803834	142795335	12475225	726	48698											
PRDM16	63976	broad.mit.edu	37	chr1	3327916	3327916	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcccggtcatttcatgCgggtttgtcttggcttctgc	12	10	4	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3327916	T	T	3327916	1	4	42	0	1	0	0	0	0	0	0	0	12563	783	27	4		4	PRDM16	1	3327916	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08		3327916	245922705	1	48699											
NBPF1	55672	broad.mit.edu	37	chr1	16894075	16894082	+	Intron	DEL	ACACACAG	-	-													acacacacacacacacacacAcacacagagtgagctcagtg					rs59398252		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16894082	-	-	16894075	6	5	42	0	1	1	0	1	0	0	0	0	10286	174	6	0		0	NBPF1	1	16894075	Intron	DEL	ACACACAG	TCGA-17-Z009-01A-01W-0746-08	13566159	16894075	232356546	2	48700											
GRIK3	2899	broad.mit.edu	37	chr1	37422217	37422218	+	Intron	DEL	GA	-	-													tgcaaggcttccaaagaactGagagaggcggaccctgagcc					rs147151193		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37422218	-	-	37422217	6	5	42	0	1	1	0	1	0	0	0	0	6841	1305	45	0		0	GRIK3	1	37422217	Intron	DEL	GA	TCGA-17-Z009-01A-01W-0746-08	20528142	37422217	211828404	3	48701											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77510310	77510310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagacaggtacaaaggcaCagggaagaagatgcagggga	15	6	0	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77510310	A	A	77510310	1	1	42	0	1	0	0	0	0	0	0	0	15345	493	17	3		3	ST6GALNAC5	1	77510310	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	40088093	77510310	171740311	4	48702											
KCND3	3752	broad.mit.edu	37	chr1	112524699	112524699	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtagcgctccccgcacGgcagctccttgctgcccggg	13	18	0	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112524699	A	A	112524699	3	1	42	1	0	0	0	0	1	0	0	0	8090	1116	39	4	1345	4	KCND3	1	112524699	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	35014389	112524699	136725922	5	48703											
NOTCH2	4853	broad.mit.edu	37	chr1	120563493	120563494	+	Intron	INS	-	A	A													cctcatatttacgtgaaggcINSaaaaaactggatagaatgct					rs143665122	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120563494	A	A	120563493	6	5	42	0	1	1	1	0	0	0	0	0	10643	725	25	0		0	NOTCH2	1	120563493	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	8038794	120563493	128687128	6	48704											
PDE4DIP	9659	broad.mit.edu	37	chr1	145010292	145010292	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactttgggaggccaaggagGgtggaccacttgaggccagg	17	9	0	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145010292	A	A	145010292	1	1	42	0	1	0	0	0	0	0	0	0	11737	1247	43	4		4	PDE4DIP	1	145010292	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	24446799	145010292	104240329	7	48705											
ATP1A2	477	broad.mit.edu	37	chr1	160105300	160105300	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgacattggcattgccaTgggcatctctggctctgacg	13	11	2	2	rs28933400		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160105300	A	A	160105300	3	1	42	1	0	0	0	0	1	0	0	0	1133	1464	51	5	2254	5	ATP1A2	1	160105300	Missense_Mutation	SNP	T	TCGA-17-Z009-01A-01W-0746-08	15095008	160105300	89145321	8	48706											
ATF6	22926	broad.mit.edu	37	chr1	161928480	161928480	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaaactgagcgtgggaCcctgccagactgaagagcag	14	10	0	4			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161928480	T	T	161928480	1	4	42	0	1	0	0	0	0	0	0	0	1088	522	18	4		4	ATF6	1	161928480	3'UTR	SNP	C	TCGA-17-Z009-01A-01W-0746-08	1823180	161928480	87322141	9	48707											
C1orf112	55732	broad.mit.edu	37	chr1	169685641	169685644	+	Intron	DEL	CAAA	-	-													ctactcaacatctccatcccCaaacaaatttagttgttcaa					rs74877548		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169685644	-	-	169685641	6	5	42	0	1	1	0	1	0	0	0	0	2005	609	21	0		0	C1orf112	1	169685641	Intron	DEL	CAAA	TCGA-17-Z009-01A-01W-0746-08	7757161	169685641	79564980	10	48708											
RYR2	6262	broad.mit.edu	37	chr1	237806708	237806708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggagatttggtgggcGttatcagcatcgcttttcag	13	9	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237806708	C	C	237806708	3	2	42	1	0	0	0	0	1	0	0	0	13880	1145	40	4	7493	4	RYR2	1	237806708	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	68121067	237806708	11443913	11	48709											
WDR64	128025	broad.mit.edu	37	chr1	241959737	241959737	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctatttctgtttgttttttTaaaaatatgtctctgctttc	4	7	2	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241959737	A	A	241959737	1	1	42	0	1	0	0	0	0	0	0	0	17442	1769	61	5		5	WDR64	1	241959737	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	4153029	241959737	7290884	12	48710											
KIDINS220	57498	broad.mit.edu	37	chr2	8937045	8937045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagattaatagcttgactcCtgtgtttatgtcatacaaat	6	8	1	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8937045	T	T	8937045	1	4	42	0	1	0	0	0	0	0	0	0	8341	696	24	4		4	KIDINS220	2	8937045	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08		8937045	234262328	13	48711											
POLR1A	25885	broad.mit.edu	37	chr2	86292633	86292633	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagaatgaaaataaatctTaagtcaaactctaatcccta	4	7	3	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86292633	A	A	86292633	1	1	42	0	1	0	0	0	0	0	0	0	12304	1769	61	5		5	POLR1A	2	86292633	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	77355588	86292633	156906740	14	48712											
VWA3B	200403	broad.mit.edu	37	chr2	98744812	98744812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctacacagtgtccttcaaCgccagaggagaaggcactat	10	11	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98744812	A	A	98744812	3	1	42	1	0	0	0	0	1	0	0	0	17368	535	19	3	831	3	VWA3B	2	98744812	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	12452179	98744812	144454561	15	48713											
SLC9A4	389015	broad.mit.edu	37	chr2	103130770	103130770	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaattccaaggggcgctgaCtcattgcctcatttaaaggt	10	9	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103130770	G	G	103130770	1	3	42	0	1	0	0	0	0	0	0	0	14830	580	20	4		4	SLC9A4	2	103130770	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	4385958	103130770	140068603	16	48714											
CNTNAP5	129684	broad.mit.edu	37	chr2	125555845	125555845	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggcacccagtcttttgctCtttatcaattcttcttctca	4	13	6	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125555845	A	A	125555845	2	1	42	1	0	0	0	0	0	0	0	1	3682	900	32	3		3	CNTNAP5	2	125555845	Silent	SNP	C	TCGA-17-Z009-01A-01W-0746-08	22425075	125555845	117643528	17	48715											
POTEF	728378	broad.mit.edu	37	chr2	130832776	130832776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctcttttgctctgggcctCcttgcccacataggactctt	8	15	3	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832776	T	T	130832776	3	4	42	1	0	0	0	0	1	0	0	0	12361	864	30	4	962	4	POTEF	2	130832776	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	5276931	130832776	112366597	18	48716											
LRP1B	53353	broad.mit.edu	37	chr2	141598496	141598496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatactttaccccctgactGggtgagctgcaagacactgt	9	12	1	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141598496	T	T	141598496	3	4	42	1	0	0	0	0	1	0	0	0	9042	1348	47	2	8942	2	LRP1B	2	141598496	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	10765720	141598496	101600877	19	48717											
XIRP2	129446	broad.mit.edu	37	chr2	168108168	168108168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaacatttctcaggcatGgatgcatttgagagtcaaat	10	6	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168108168	T	T	168108168	3	4	42	1	0	0	0	0	1	0	0	0	17557	1348	47	2	10296	2	XIRP2	2	168108168	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	26509672	168108168	75091205	20	48718											
UBE2E3	10477	broad.mit.edu	37	chr2	181927579	181927579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagagcagaacacgacagGatagccagacagtggaccaa	11	10	0	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181927579	T	T	181927579	3	4	42	1	0	0	0	0	1	0	0	0	16980	1165	41	3	606	3	UBE2E3	2	181927579	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	13819411	181927579	61271794	21	48719											
WDR75	84128	broad.mit.edu	37	chr2	190339976	190339976	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatgtagatatggaagaaGaaaaagaaagtgaagattca	11	1	1	7			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190339976	A	A	190339976	3	1	42	1	0	0	0	0	1	0	0	0	17452	943	33	4	2408	4	WDR75	2	190339976	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	8412397	190339976	52859397	22	48720											
SLC39A10	57181	broad.mit.edu	37	chr2	196578314	196578314	+	Intron	DEL	T	-	-													actcaagacaaacttttttcTtttttttttttcattcaaat					rs71960316		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196578314	-	-	196578314	6	5	42	0	1	1	0	1	0	0	0	0	14727	1624	56	0		0	SLC39A10	2	196578314	Intron	DEL	T	TCGA-17-Z009-01A-01W-0746-08	6238338	196578314	46621059	23	48721											
STRADB	55437	broad.mit.edu	37	chr2	202323423	202323423	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcttttccccactgtagtCattagacctttttgtatcta	4	11	3	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202323423	T	T	202323423	1	4	42	0	1	0	0	0	0	0	0	0	15443	841	29	4		4	STRADB	2	202323423	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	5745109	202323423	40875950	24	48722											
PIKFYVE	200576	broad.mit.edu	37	chr2	209195289	209195290	+	Missense_Mutation	DNP	GG	TT	TT													atgttctgtgatacccccatGgtacatcatattcggcgctt							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	209195290	TT	TT	209195289	3	4	42	1	0	0	0	0	1	0	0	0	12019	1348	47	2	3931	2	PIKFYVE	2	209195289	Missense_Mutation	DNP	GG	TCGA-17-Z009-01A-01W-0746-08	6871866	209195289	34004084	25	48723											
SLC6A11	6538	broad.mit.edu	37	chr3	10967754	10967754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctctctccccgctgtgGgccaccttgttcttcatgat	8	15	3	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10967754	T	T	10967754	3	4	42	1	0	0	0	0	1	0	0	0	14788	1241	43	2	1219	2	SLC6A11	3	10967754	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08		10967754	187054676	26	48724											
NUP210	23225	broad.mit.edu	37	chr3	13364776	13364776	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctccccgctcccaggtaCtctgaagacagcccaagccc	7	20	1	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13364776	T	T	13364776	1	4	42	0	1	0	0	0	0	0	0	0	10855	580	20	4		4	NUP210	3	13364776	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	2397022	13364776	184657654	27	48725											
SLC6A6	6533	broad.mit.edu	37	chr3	14489271	14489271	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcgcaagaacaagagtgtCtggatcaccatcagctccac	9	12	3	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14489271	A	A	14489271	2	1	42	1	0	0	0	0	0	0	0	1	14802	900	32	3		3	SLC6A6	3	14489271	Silent	SNP	C	TCGA-17-Z009-01A-01W-0746-08	1124495	14489271	183533159	28	48726											
DCLK3	85443	broad.mit.edu	37	chr3	36763132	36763132	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatttcaaggtagtagattTgtcctcatttcgctgaacct	7	9	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36763132	G	G	36763132	3	3	42	1	0	0	0	0	1	0	0	0	4326	1821	63	5	487	5	DCLK3	3	36763132	Missense_Mutation	SNP	T	TCGA-17-Z009-01A-01W-0746-08	22273861	36763132	161259298	29	48727											
OR5H14	403273	broad.mit.edu	37	chr3	97868848	97868848	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatttttgcaggttcaattCaagtttttaccatagggact	7	6	2	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97868848	A	A	97868848	3	1	42	1	0	0	0	0	1	0	0	0	11254	827	29	3	621	3	OR5H14	3	97868848	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	61105716	97868848	100153582	30	48728											
STXBP5L	9515	broad.mit.edu	37	chr3	120811527	120811527	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagattttgggctgagacaGtggggttttctagatacaca	14	5	1	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120811527	A	A	120811527	1	1	42	0	1	0	0	0	0	0	0	0	15475	1044	36	4		4	STXBP5L	3	120811527	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	22942679	120811527	77210903	31	48729											
ZNF595	152687	broad.mit.edu	37	chr4	54577	54577	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgccaaaaacacacgcaGtgcccagaagtctcctggct	8	14	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54577	A	A	54577	1	1	42	0	1	0	0	0	0	0	0	0	18152	1044	36	4		4	ZNF595	4	54577	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08		54577	191099699	32	48730											
C4orf6	10141	broad.mit.edu	37	chr4	5527967	5527967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagacactgcagataaaaCagagccagaatgctttgctg	10	9	0	4			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5527967	A	A	5527967	3	1	42	1	0	0	0	0	1	0	0	0	2301	478	17	3	197	3	C4orf6	4	5527967	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	5473390	5527967	185626309	33	48731											
PDS5A	23244	broad.mit.edu	37	chr4	39924372	39924373	+	Intron	INS	-	A	A													cttattgtggctattgctatINSaaaaaaaaaaaaaaaagaat							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39924373	A	A	39924372	6	5	42	0	1	1	1	0	0	0	0	0	11785	1421	49	0		0	PDS5A	4	39924372	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	34396405	39924372	151229904	34	48732											
GABRG1	2565	broad.mit.edu	37	chr4	46043195	46043195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctccaaacactgatacCcataatcatcttcttgcggc	5	15	3	1	rs17852913		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46043195	A	A	46043195	3	1	42	1	0	0	0	0	1	0	0	0	6231	623	22	2	193	2	GABRG1	4	46043195	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	6118823	46043195	145111081	35	48733											
UGT2B10	7365	broad.mit.edu	37	chr4	69874469	69874469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggattggttaaatcattTaaatgctttcaaaattactc	5	5	2	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69874469	A	A	69874469	1	1	42	0	1	0	0	0	0	0	0	0	17082	1769	61	5		5	UGT2B10	4	69874469	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	23831274	69874469	121279807	36	48734											
ADAMTS3	9508	broad.mit.edu	37	chr4	73179387	73179387	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacaagagttacaaggataTactcacatgggattattgca	8	6	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73179387	C	C	73179387	1	2	42	0	1	0	0	0	0	0	0	0	267	1421	49	5		5	ADAMTS3	4	73179387	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	3304918	73179387	117974889	37	48735											
PRKG2	5593	broad.mit.edu	37	chr4	82074851	82074851	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcgccctctctaatgaTgtaatctcctttgtcatagt	5	12	3	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82074851	C	C	82074851	3	2	42	1	0	0	0	0	1	0	0	0	12629	1464	51	5	1403	5	PRKG2	4	82074851	Missense_Mutation	SNP	T	TCGA-17-Z009-01A-01W-0746-08	8895464	82074851	109079425	38	48736											
AGPAT9	84803	broad.mit.edu	37	chr4	84465717	84465717	+	Frame_Shift_Del	DEL	C	-	-													aatacgaattgaaaaaggaaCcccaaaggagtcgattctta							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84465717	-	-	84465717	7	5	42	1	0	1	0	1	0	0	0	0	392	507	18	0	176	0	AGPAT9	4	84465717	Frame_Shift_Del	DEL	C	TCGA-17-Z009-01A-01W-0746-08	2390866	84465717	106688559	39	48737											
MAPK10	5602	broad.mit.edu	37	chr4	86995578	86995578	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgttatgtgtgaatttgAttctgtcatcatgatgttag	9	3	3	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86995578	G	G	86995578	1	3	42	0	1	0	0	0	0	0	0	0	9364	348	12	5		5	MAPK10	4	86995578	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08	2529861	86995578	104158698	40	48738											
PTPN13	5783	broad.mit.edu	37	chr4	87725144	87725144	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagcaccaccttatcatatCtagcagaaaattaatttttc	3	9	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87725144	G	G	87725144	1	3	42	0	1	0	0	0	0	0	0	0	12888	928	32	4		4	PTPN13	4	87725144	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	729566	87725144	103429132	41	48739											
DNAJB14	79982	broad.mit.edu	37	chr4	100822261	100822261	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaaggcatctgccttccttCggagtcgatcatcacggtat	9	12	4	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100822261	T	T	100822261	3	4	42	1	0	0	0	0	1	0	0	0	4659	884	31	4	79	4	DNAJB14	4	100822261	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	13097117	100822261	90332015	42	48740											
ABCE1	6059	broad.mit.edu	37	chr4	146031567	146031567	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaccgaaaagatgaaacaaAgacacaggcaattgtatgtc	10	7	0	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146031567	G	G	146031567	3	3	42	1	0	0	0	0	1	0	0	0	64	72	3	5	606	5	ABCE1	4	146031567	Missense_Mutation	SNP	A	TCGA-17-Z009-01A-01W-0746-08	45209306	146031567	45122709	43	48741											
MFAP3L	9848	broad.mit.edu	37	chr4	170913452	170913452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccgctgtcgtgcatttGccattttcctgtcggaaggg	14	10	0	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170913452	T	T	170913452	3	4	42	1	0	0	0	0	1	0	0	0	9609	1328	46	3	926	3	MFAP3L	4	170913452	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	24881885	170913452	20240824	44	48742											
ADAM29	11086	broad.mit.edu	37	chr4	175897502	175897502	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcaagtggaagtcggagAacattacgccccggatgcaa	12	9	0	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175897502	G	G	175897502	3	3	42	1	0	0	0	0	1	0	0	0	247	246	9	5	828	5	ADAM29	4	175897502	Missense_Mutation	SNP	A	TCGA-17-Z009-01A-01W-0746-08	4984050	175897502	15256774	45	48743											
MAN2A1	4124	broad.mit.edu	37	chr5	109117165	109117165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaactcagagagacaaGggccaatcgatgttccctgt	11	9	1	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109117165	T	T	109117165	3	4	42	1	0	0	0	0	1	0	0	0	9306	991	35	2	1477	2	MAN2A1	5	109117165	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08		109117165	71798095	46	48744											
CAMK4	814	broad.mit.edu	37	chr5	110815092	110815092	+	Intron	DEL	A	-	-													gaaatccataccttctggggAggtcactcacctcttataaa					rs34011422		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110815092	-	-	110815092	6	5	42	0	1	1	0	1	0	0	0	0	2631	319	11	0		0	CAMK4	5	110815092	Intron	DEL	A	TCGA-17-Z009-01A-01W-0746-08	1697927	110815092	70100168	47	48745											
FBN2	2201	broad.mit.edu	37	chr5	127654020	127654020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactttttctgtgcatactGctgttccaaagaatttggtg	8	7	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127654020	T	T	127654020	1	4	42	0	1	0	0	0	0	0	0	0	5760	1334	46	3		3	FBN2	5	127654020	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	16838928	127654020	53261240	48	48746											
PCDH12	51294	broad.mit.edu	37	chr5	141325368	141325368	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctcagccggtccagggccaGacctgtgggggaaggagggg	20	10	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141325368	A	A	141325368	2	1	42	1	0	0	0	0	0	0	0	1	11604	933	33	4		4	PCDH12	5	141325368	Silent	SNP	G	TCGA-17-Z009-01A-01W-0746-08	13671348	141325368	39589892	49	48747											
SH3RF2	153769	broad.mit.edu	37	chr5	145444333	145444333	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggaaggaaggaaGgaaggaaaggaaggaaggaa	20	0	0	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145444333	A	A	145444333	1	1	42	0	1	0	0	0	0	0	0	0	14372	1015	35	4		4	SH3RF2	5	145444333	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	4118965	145444333	35470927	50	48748											
DOCK2	1794	broad.mit.edu	37	chr5	169435635	169435635	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttggatttcctgaagaggggGaggtccatgagatcctctga	14	7	1	4			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169435635	A	A	169435635	1	1	42	0	1	0	0	0	0	0	0	0	4727	1189	41	4		4	DOCK2	5	169435635	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	23991302	169435635	11479625	51	48749											
ZNF354B	117608	broad.mit.edu	37	chr5	178293397	178293397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatttcccctctagaaacAgaattcaaaaattgggatat	6	7	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178293397	T	T	178293397	1	4	42	0	1	0	0	0	0	0	0	0	17991	203	7	5		5	ZNF354B	5	178293397	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08	8857762	178293397	2621863	52	48750											
RNF39	80352	broad.mit.edu	37	chr6	30039567	30039568	+	Intron	DEL	TG	-	-													acgaagatcacgtaaaagacTgagagctagtgaccacacaa					rs35559353		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30039568	-	-	30039567	6	5	42	0	1	1	0	1	0	0	0	0	13602	1595	55	0		0	RNF39	6	30039567	Intron	DEL	TG	TCGA-17-Z009-01A-01W-0746-08		30039567	141075500	53	48751											
NUDT3	11165	broad.mit.edu	37	chr6	34261308	34261308	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtcctgtgcttcctctccTggttctgaagggcaaagaga	11	11	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34261308	A	A	34261308	3	1	42	1	0	0	0	0	1	0	0	0	10835	1580	55	5	266	5	NUDT3	6	34261308	Missense_Mutation	SNP	T	TCGA-17-Z009-01A-01W-0746-08	4221741	34261308	136853759	54	48752											
C6orf222	389384	broad.mit.edu	37	chr6	36294544	36294544	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagattgctgttggggagagGagaaaaactggtcaggttca	16	4	2	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36294544	C	C	36294544	1	2	42	0	1	0	0	0	0	0	0	0	2379	1189	41	4		4	C6orf222	6	36294544	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	2033236	36294544	134820523	55	48753											
PRIM2	5558	broad.mit.edu	37	chr6	57218373	57218374	+	Intron	INS	-	A	A													gtgcacatgcacacatacatINSaaagaagatctacggttttg					rs138912611	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57218374	A	A	57218373	6	5	42	0	1	1	1	0	0	0	0	0	12597	1421	49	0		0	PRIM2	6	57218373	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	20923829	57218373	113896694	56	48754											
PRIM2	5558	broad.mit.edu	37	chr6	57262516	57262516	+	Intron	DEL	A	-	-													ttgctggtgaactagtttgcAaaaaaaatcaactcctgggt					rs75873741		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57262516	-	-	57262516	6	5	42	0	1	1	0	1	0	0	0	0	12597	145	5	0		0	PRIM2	6	57262516	Intron	DEL	A	TCGA-17-Z009-01A-01W-0746-08	44143	57262516	113852551	57	48755											
PRIM2	5558	broad.mit.edu	37	chr6	57477669	57477670	+	Intron	INS	-	A	A													aactgtaaaatgtgaaacttINSacaaaagaaaacagaatatc					rs144786973	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57477670	A	A	57477669	6	5	42	0	1	1	1	0	0	0	0	0	12597	1769	61	0		0	PRIM2	6	57477669	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	215153	57477669	113637398	58	48756											
RNF217	154214	broad.mit.edu	37	chr6	125287330	125287330	+	Intron	DEL	T	-	-													agcttatacataaaatagccTtttttagttggttaaaaata							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125287330	-	-	125287330	6	5	42	0	1	1	0	1	0	0	0	0	13592	1624	56	0		0	RNF217	6	125287330	Intron	DEL	T	TCGA-17-Z009-01A-01W-0746-08	67809661	125287330	45827737	59	48757											
DNAH11	8701	broad.mit.edu	37	chr7	21723542	21723542	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaacagccctcgactagtGatcactcctctaactgacag	8	13	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21723542	T	T	21723542	2	4	42	1	0	0	0	0	0	0	0	1	4639	1277	45	3		3	DNAH11	7	21723542	Silent	SNP	G	TCGA-17-Z009-01A-01W-0746-08		21723542	137415121	60	48758											
VPS41	27072	broad.mit.edu	37	chr7	38816338	38816338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgatcacagagaggtgCaagtccactgatgtagaatt	11	7	1	4			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38816338	A	A	38816338	3	1	42	1	0	0	0	0	1	0	0	0	17337	710	25	3	1817	3	VPS41	7	38816338	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	17092796	38816338	120322325	61	48759											
SUN3	256979	broad.mit.edu	37	chr7	48029980	48029980	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatttgttcacatgttttcCtgctgaccctctctccacta	4	14	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48029980	T	T	48029980	1	4	42	0	1	0	0	0	0	0	0	0	15511	696	24	4		4	SUN3	7	48029980	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	9213642	48029980	111108683	62	48760											
ZNF92	168374	broad.mit.edu	37	chr7	64864055	64864055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaaaaaccatacaaatGtgaagaatgtggcaaagcct	11	6	0	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64864055	T	T	64864055	3	4	42	1	0	0	0	0	1	0	0	0	18330	1377	48	3	1042	3	ZNF92	7	64864055	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	16834075	64864055	94274608	63	48761											
SPDYE5	442590	broad.mit.edu	37	chr7	75130961	75130961	+	Frame_Shift_Del	DEL	C	-	-													tcggttccagttaggccgttCcatgaacctgagggccagga							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75130961	-	-	75130961	7	5	42	1	0	1	0	1	0	0	0	0	15150	855	30	0	858	0	SPDYE5	7	75130961	Frame_Shift_Del	DEL	C	TCGA-17-Z009-01A-01W-0746-08	10266906	75130961	84007702	64	48762											
CADPS2	93664	broad.mit.edu	37	chr7	122054055	122054055	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggactacaatcagagtagaTtgtattttaaattcacataa	6	5	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122054055	C	C	122054055	1	2	42	0	1	0	0	0	0	0	0	0	2597	1508	52	5		5	CADPS2	7	122054055	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	46923094	122054055	37084608	65	48763											
RHEB	6009	broad.mit.edu	37	chr7	151167620	151167620	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacatccctgcgactgatgaGaacgcaatgcaaaatgaggt	10	10	0	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151167620	C	C	151167620	1	2	42	0	1	0	0	0	0	0	0	0	13437	957	33	4		4	RHEB	7	151167620	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	29113565	151167620	7971043	66	48764											
PTPRN2	5799	broad.mit.edu	37	chr7	157959914	157959914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggagctgggtccgggaccCgggagggtaggtcagcgcag	21	10	1	0	rs141244412	byFrequency	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157959914	A	A	157959914	3	1	42	1	0	0	0	0	1	0	0	0	12916	652	23	1	2500	1	PTPRN2	7	157959914	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	6792294	157959914	1178749	67	48765											
ARFGEF1	10565	broad.mit.edu	37	chr8	68179298	68179298	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcctggtaaagtttaAatttgaaaatgtttttatag	6	4	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68179298	C	C	68179298	1	2	42	0	1	0	0	0	0	0	0	0	854	29	1	5		5	ARFGEF1	8	68179298	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08		68179298	78184724	68	48766											
ZFHX4	79776	broad.mit.edu	37	chr8	77765686	77765686	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagttatcaaacactggTttagaaatacgctttttaag	6	5	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77765686	A	A	77765686	3	1	42	1	0	0	0	0	1	0	0	0	17761	1725	60	5	6563	5	ZFHX4	8	77765686	Missense_Mutation	SNP	T	TCGA-17-Z009-01A-01W-0746-08	9586388	77765686	68598336	69	48767											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885169	88885169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgagcaggtggccatgaCggaggctccagattctcgtg	15	9	1	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88885169	A	A	88885169	3	1	42	1	0	0	0	0	1	0	0	0	4305	536	19	3	160	3	DCAF4L2	8	88885169	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	11119483	88885169	57478853	70	48768											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18769769	18769769	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcaagtcaaatggctGtgtctgtcttcaagggagat	11	8	5	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18769769	A	A	18769769	1	1	42	0	1	0	0	0	0	0	0	0	274	1392	48	4		4	ADAMTSL1	9	18769769	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08		18769769	122443662	71	48769											
TRPM3	80036	broad.mit.edu	37	chr9	73531957	73531957	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtatagagactggtatGtcgctaaggcaagaaaaata	13	4	0	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73531957	A	A	73531957	1	1	42	0	1	0	0	0	0	0	0	0	16712	1392	48	4		4	TRPM3	9	73531957	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	54762188	73531957	67681474	72	48770											
CEP110	11064	broad.mit.edu	37	chr9	123889107	123889108	+	Intron	INS	-	T	T													tttttgtttgtttgttttggINStttttttttgagatgaattt					rs144626910	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123889108	T	T	123889107	6	5	42	0	1	1	1	0	0	0	0	0	3275	1276	44	0		0	CEP110	9	123889107	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	50357150	123889107	17324324	73	48771											
PRKCQ	5588	broad.mit.edu	37	chr10	6545653	6545655	+	Intron	DEL	CTC	-	-													catatctcccacttctgtgaCtcctaccattttcccagtct					rs141538404		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6545655	-	-	6545653	6	5	42	0	1	1	0	1	0	0	0	0	12621	580	20	0		0	PRKCQ	10	6545653	Intron	DEL	CTC	TCGA-17-Z009-01A-01W-0746-08		6545653	128989094	74	48772											
ST8SIA6	338596	broad.mit.edu	37	chr10	17402937	17402938	+	Intron	INS	-	GAA	GAA													gggaagaagaagaggaaaagINSgaagaagaagaagaaggagg					rs138842680	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAA	17402938	GAA	GAA	17402937	6	5	42	0	1	1	1	0	0	0	0	0	15354	1015	35	0		0	ST8SIA6	10	17402937	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	10857284	17402937	118131810	75	48773											
SLC39A12	221074	broad.mit.edu	37	chr10	18270285	18270285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagatatttctacagaaGggcctctcactcatttctaa	8	9	4	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18270285	T	T	18270285	3	4	42	1	0	0	0	0	1	0	0	0	14729	991	35	2	987	2	SLC39A12	10	18270285	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	867348	18270285	117264462	76	48774											
HPSE2	60495	broad.mit.edu	37	chr10	100611149	100611149	+	Intron	DEL	A	-	-													ttgcttcacaggttttcatgAagtgaaaagatttcacattt					rs67440730		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100611149	-	-	100611149	6	5	42	0	1	1	0	1	0	0	0	0	7412	261	9	0		0	HPSE2	10	100611149	Intron	DEL	A	TCGA-17-Z009-01A-01W-0746-08	82340864	100611149	34923598	77	48775											
XPNPEP1	7511	broad.mit.edu	37	chr10	111651599	111651599	+	Intron	DEL	A	-	-													ctgtgcctgaagcaggggagAaaaaaaaaagaagaagaaag							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111651599	-	-	111651599	6	5	42	0	1	1	0	1	0	0	0	0	17569	261	9	0		0	XPNPEP1	10	111651599	Intron	DEL	A	TCGA-17-Z009-01A-01W-0746-08	11040450	111651599	23883148	78	48776											
FAM160A2	84067	broad.mit.edu	37	chr11	6240282	6240283	+	Splice_Site	INS	-	G	G													cagagagaccatgcagagctINSgggggggtggaggggaggga							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6240283	G	G	6240282	8	5	42	1	0	1	1	0	0	0	1	0	5515	1594	55	0	1794	0	FAM160A2	11	6240282	Splice_Site	INS	-	TCGA-17-Z009-01A-01W-0746-08		6240282	128766234	79	48777											
PPFIBP2	8495	broad.mit.edu	37	chr11	7576243	7576244	+	Intron	INS	-	A	A													tgtgattctgcttgcaaattINScactgtaattgaattacact					rs148376619	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7576244	A	A	7576243	6	5	42	0	1	1	1	0	0	0	0	0	12410	1798	62	0		0	PPFIBP2	11	7576243	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	1335961	7576243	127430273	80	48778											
SLC17A6	57084	broad.mit.edu	37	chr11	22398082	22398082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtcaaaacttatgtgtGtatttcaggtttcaatgtta	8	5	3	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22398082	T	T	22398082	1	4	42	0	1	0	0	0	0	0	0	0	14534	1392	48	3		3	SLC17A6	11	22398082	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	14821839	22398082	112608434	81	48779											
OR5D14	219436	broad.mit.edu	37	chr11	55563896	55563896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaaccccatgctgaacCctctgatctacagcctaagg	7	14	3	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563896	A	A	55563896	3	1	42	1	0	0	0	0	1	0	0	0	11249	623	22	2	867	2	OR5D14	11	55563896	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	33165814	55563896	79442620	82	48780											
OR5T2	219464	broad.mit.edu	37	chr11	56000092	56000092	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagtagcatgtaaaatgccAgcaacataggaagcattgat	9	6	0	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56000092	T	T	56000092	2	4	42	1	0	0	0	0	0	0	0	1	11276	175	7	5		5	OR5T2	11	56000092	Silent	SNP	A	TCGA-17-Z009-01A-01W-0746-08	436196	56000092	79006424	83	48781											
OR5M9	390162	broad.mit.edu	37	chr11	56230509	56230509	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagcagagggttgcagccGgccatgtacctgtcaaaggc	13	10	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56230509	T	T	56230509	2	4	42	1	0	0	0	0	0	0	0	1	11271	1103	39	1		1	OR5M9	11	56230509	Silent	SNP	G	TCGA-17-Z009-01A-01W-0746-08	230417	56230509	78776007	84	48782											
OR9Q1	219956	broad.mit.edu	37	chr11	57933972	57933974	+	Intron	DEL	TCT	-	-													acttgttaattgcaagtatcTcttcttattaaaggctgcag					rs34055367		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57933974	-	-	57933972	6	5	42	0	1	1	0	1	0	0	0	0	11349	1566	54	0		0	OR9Q1	11	57933972	Intron	DEL	TCT	TCGA-17-Z009-01A-01W-0746-08	1703463	57933972	77072544	85	48783											
OR4D6	219983	broad.mit.edu	37	chr11	59224942	59224942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccattccccttctgtgGccccaacacactggatgcct	7	17	1	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59224942	T	T	59224942	3	4	42	1	0	0	0	0	1	0	0	0	11152	1203	42	3	511	3	OR4D6	11	59224942	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	1290970	59224942	75781574	86	48784											
MS4A15	219995	broad.mit.edu	37	chr11	60541123	60541123	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagccttccccaagataggCatcagaaggagcaaggaggc	13	10	1	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60541123	T	T	60541123	1	4	42	0	1	0	0	0	0	0	0	0	9953	725	25	4		4	MS4A15	11	60541123	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	1316181	60541123	74465393	87	48785											
GDPD4	220032	broad.mit.edu	37	chr11	76979943	76979943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacacatacttattttcaCccatgttcatcatgctcaga	3	14	4	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76979943	A	A	76979943	1	1	42	0	1	0	0	0	0	0	0	0	6390	522	18	3		3	GDPD4	11	76979943	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	16438820	76979943	58026573	88	48786											
GRM5	2915	broad.mit.edu	37	chr11	88258672	88258672	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgtggagatggtcactctGtgccaaaatgggggttcctg	14	8	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88258672	C	C	88258672	1	2	42	0	1	0	0	0	0	0	0	0	6866	1392	48	4		4	GRM5	11	88258672	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	11278729	88258672	46747844	89	48787											
DDI1	414301	broad.mit.edu	37	chr11	103908104	103908104	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttctcaggtgctgatggAgcagcaaagggaaaaggcct	13	8	1	1	rs140364909		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103908104	G	G	103908104	3	3	42	1	0	0	0	0	1	0	0	0	4361	304	11	5	556	5	DDI1	11	103908104	Missense_Mutation	SNP	A	TCGA-17-Z009-01A-01W-0746-08	15649432	103908104	31098412	90	48788											
GUCY1A2	2977	broad.mit.edu	37	chr11	106697166	106697166	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggatctagcagatcttcTccatatgatgaaagattcat	7	7	4	4			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106697166	A	A	106697166	1	1	42	0	1	0	0	0	0	0	0	0	6958	1566	54	5		5	GUCY1A2	11	106697166	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	2789062	106697166	28309350	91	48789											
TECTA	7007	broad.mit.edu	37	chr11	120976570	120976570	+	Frame_Shift_Del	DEL	G	-	-													ggagctcatgtatccattttGgcagaatgacaccaaaaccc							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120976570	-	-	120976570	7	5	42	1	0	1	0	1	0	0	0	0	15869	1357	47	0	101	0	TECTA	11	120976570	Frame_Shift_Del	DEL	G	TCGA-17-Z009-01A-01W-0746-08	14279404	120976570	14029946	92	48790											
NTM	50863	broad.mit.edu	37	chr11	132180083	132180083	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgcagtgtgaagcctcaGcagtcccctcagcagaattc	9	14	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132180083	A	A	132180083	3	1	42	1	0	0	0	0	1	0	0	0	10794	971	34	4	843	4	NTM	11	132180083	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	11203513	132180083	2826433	93	48791											
IGSF9B	22997	broad.mit.edu	37	chr11	133809957	133809958	+	Intron	INS	-	T	T													tgtcctcgcacgtgtcatcaINStatacagaaacatacacctt					rs138933651	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133809958	T	T	133809957	6	5	42	0	1	1	1	0	0	0	0	0	7676	232	8	0		0	IGSF9B	11	133809957	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	1629874	133809957	1196559	94	48792											
KCNA6	3742	broad.mit.edu	37	chr12	4919925	4919925	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttcatcatggcatcaccCctggggaaatggggaccggg	13	11	3	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4919925	T	T	4919925	3	4	42	1	0	0	0	0	1	0	0	0	8077	623	22	4	720	4	KCNA6	12	4919925	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08		4919925	128931970	95	48793											
CLEC12A	160364	broad.mit.edu	37	chr12	10124236	10124236	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatcttcaattccagaActccagtgagatggaaaaaa	8	8	2	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10124236	G	G	10124236	3	3	42	1	0	0	0	0	1	0	0	0	3529	43	2	5	43	5	CLEC12A	12	10124236	Missense_Mutation	SNP	A	TCGA-17-Z009-01A-01W-0746-08	5204311	10124236	123727659	96	48794											
SLCO1B3	28234	broad.mit.edu	37	chr12	21229256	21229256	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgattcttgggtagatgtAggccaaaacaatggaataat	11	4	1	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21229256	G	G	21229256	1	3	42	0	1	0	0	0	0	0	0	0	14838	435	15	5		5	SLCO1B3	12	21229256	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08	11105020	21229256	112622639	97	48795											
DNM1L	10059	broad.mit.edu	37	chr12	32854552	32854553	+	Intron	INS	-	AA	AA													ttcatttttgatctattcttINSaaaaagatatgaattgatta							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32854553	AA	AA	32854552	6	5	42	0	1	1	1	0	0	0	0	0	4711	1769	61	0		0	DNM1L	12	32854552	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	11625296	32854552	100997343	98	48796											
CBX5	23468	broad.mit.edu	37	chr12	54635557	54635558	+	Missense_Mutation	DNP	TT	AA	AA													ctttagctctttgctgtttcTttctctttgttttccgcatc							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	54635558	AA	AA	54635557	3	1	42	1	0	0	0	0	1	0	0	0	2747	1606	56	5	21	5	CBX5	12	54635557	Missense_Mutation	DNP	TT	TCGA-17-Z009-01A-01W-0746-08	21781005	54635557	79216338	99	48797											
RASAL1	8437	broad.mit.edu	37	chr12	113552599	113552599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagggtcctcaggctttGctcaccgggtgcggcccagg	16	13	3	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113552599	T	T	113552599	1	4	42	0	1	0	0	0	0	0	0	0	13171	1334	46	3		3	RASAL1	12	113552599	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	58917042	113552599	20299296	100	48798											
GPR133	283383	broad.mit.edu	37	chr12	131590330	131590330	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatccggaaccagcgctacCacatccacgccaacctgtcc	6	20	0	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131590330	T	T	131590330	3	4	42	1	0	0	0	0	1	0	0	0	6708	594	21	4	1873	4	GPR133	12	131590330	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	18037731	131590330	2261565	101	48799											
PABPC3	5042	broad.mit.edu	37	chr13	25671011	25671011	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgaaagtaatgaccgaTgaaagtggaaaatccaaagg	12	4	0	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25671011	A	A	25671011	3	1	42	1	0	0	0	0	1	0	0	0	11459	1461	51	5	677	5	PABPC3	13	25671011	Missense_Mutation	SNP	T	TCGA-17-Z009-01A-01W-0746-08		25671011	89498867	102	48800											
FOXO1	2308	broad.mit.edu	37	chr13	41134917	41134917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaccctctggattgagcatCcaccaagaactttttccagt	6	14	1	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41134917	A	A	41134917	3	1	42	1	0	0	0	0	1	0	0	0	6083	856	30	3	1260	3	FOXO1	13	41134917	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	15463906	41134917	74034961	103	48801											
KLF12	11278	broad.mit.edu	37	chr13	74586950	74586950	+	Intron	DEL	C	-	-													aactagcagtacttaaaaaaCaatcacatattatatctaac					rs147082948		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74586950	-	-	74586950	6	5	42	0	1	1	0	1	0	0	0	0	8411	493	17	0		0	KLF12	13	74586950	Intron	DEL	C	TCGA-17-Z009-01A-01W-0746-08	33452033	74586950	40582928	104	48802											
REC8	9985	broad.mit.edu	37	chr14	24647922	24647922	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaagtatcctcaaaaccaaTtcctcattcctggtgctcct	5	14	2	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24647922	C	C	24647922	1	2	42	0	1	0	0	0	0	0	0	0	13307	1508	52	5		5	REC8	14	24647922	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08		24647922	82701618	105	48803											
RTN1	6252	broad.mit.edu	37	chr14	60213133	60213133	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaatgagagatgtgtaacacGatccttccccatcttttgat	7	9	1	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60213133	C	C	60213133	3	2	42	1	0	0	0	0	1	0	0	0	13836	1059	37	4	2119	4	RTN1	14	60213133	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	35565211	60213133	47136407	106	48804											
IFI27	3429	broad.mit.edu	37	chr14	94581094	94581094	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcccttcttgtggctcccAacctggggcagccccctgcc	9	19	1	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94581094	C	C	94581094	1	2	42	0	1	0	0	0	0	0	0	0	7582	145	5	5		5	IFI27	14	94581094	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08	34367961	94581094	12768446	107	48805											
C15orf2	23742	broad.mit.edu	37	chr15	24923774	24923774	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttattctggggaatccagcAaccccagcaccagttatagg	9	11	1	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24923774	C	C	24923774	2	2	42	1	0	0	0	0	0	0	0	1	1797	117	5	5		5	C15orf2	15	24923774	Silent	SNP	A	TCGA-17-Z009-01A-01W-0746-08		24923774	77607618	108	48806											
MYO5A	4644	broad.mit.edu	37	chr15	52700338	52700338	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtttctctcctcttctgcCttcgaaataagaagagtttt	6	9	3	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52700338	T	T	52700338	5	4	42	1	0	0	0	0	0	0	1	0	10172	695	24	4	4951	4	MYO5A	15	52700338	Splice_Site	SNP	C	TCGA-17-Z009-01A-01W-0746-08	27776564	52700338	49831054	109	48807											
ODF3L1	161753	broad.mit.edu	37	chr15	76019833	76019833	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgctttcaccatgggcatCaagcactcactccacctgtg	7	16	3	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76019833	G	G	76019833	3	3	42	1	0	0	0	0	1	0	0	0	10926	816	29	4	791	4	ODF3L1	15	76019833	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	23319495	76019833	26511559	110	48808											
LYSMD4	145748	broad.mit.edu	37	chr15	100271393	100271393	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttactttgccattgttaatCactctgaatgctgaaaacat	5	9	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100271393	T	T	100271393	1	4	42	0	1	0	0	0	0	0	0	0	9215	813	29	4		4	LYSMD4	15	100271393	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	24251560	100271393	2259999	111	48809											
ACSM2A	123876	broad.mit.edu	37	chr16	20492090	20492090	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctggttccagacttctggAatggcctagaggttcggtgt	15	8	1	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20492090	T	T	20492090	1	4	42	0	1	0	0	0	0	0	0	0	183	261	9	5		5	ACSM2A	16	20492090	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08		20492090	69862663	112	48810											
DNAH3	55567	broad.mit.edu	37	chr16	21115927	21115927	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctcatctgcaaaacacAtactgcctgctccaggacac	6	15	2	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21115927	T	T	21115927	1	4	42	0	1	0	0	0	0	0	0	0	4643	232	8	5		5	DNAH3	16	21115927	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08	623837	21115927	69238826	113	48811											
BBS2	583	broad.mit.edu	37	chr16	56544822	56544822	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggccaaggaattaacattGtctccagtaacctgaaaata	7	8	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56544822	A	A	56544822	2	1	42	1	0	0	0	0	0	0	0	1	1343	1368	48	4		4	BBS2	16	56544822	Silent	SNP	G	TCGA-17-Z009-01A-01W-0746-08	35428895	56544822	33809931	114	48812											
CLEC18C	283971	broad.mit.edu	37	chr16	70050306	70050306	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaacagaagaattgggggTtgggggtgggaaacagtgtt	17	2	0	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70050306	C	C	70050306	1	2	42	0	1	0	0	0	0	0	0	0	3536	1740	60	5		5	CLEC18C	16	70050306	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	13505484	70050306	20304447	115	48813											
PELP1	27043	broad.mit.edu	37	chr17	4609423	4609427	+	5'Flank	DEL	TTAAT	-	-													aatacattaacccaatagcgTtaatttttctccatctccac					rs72445939		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4609427	-	-	4609423	6	5	42	0	1	1	0	1	0	0	0	0	11819	1740	60	0		0	PELP1	17	4609423	5'Flank	DEL	TTAAT	TCGA-17-Z009-01A-01W-0746-08		4609423	76585787	116	48814											
RHOT1	55288	broad.mit.edu	37	chr17	30478172	30478172	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggttctttactgttgactcTggtaggttgagtttcaaagc	12	6	3	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30478172	A	A	30478172	1	1	42	0	1	0	0	0	0	0	0	0	13452	1595	55	5		5	RHOT1	17	30478172	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	25868749	30478172	50717038	117	48815											
STAT3	6774	broad.mit.edu	37	chr17	40475149	40475149	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgctccttactgataaaGcccatgatgtacctggagcc	8	14	0	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40475149	T	T	40475149	2	4	42	1	0	0	0	0	0	0	0	1	15384	958	34	3		3	STAT3	17	40475149	Silent	SNP	G	TCGA-17-Z009-01A-01W-0746-08	9996977	40475149	40720061	118	48816											
IMPA2	3613	broad.mit.edu	37	chr18	12028754	12028754	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcactagggaaaatgcccAgccggggtacctggctgaag	13	10	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12028754	G	G	12028754	1	3	42	0	1	0	0	0	0	0	0	0	7793	203	7	5		5	IMPA2	18	12028754	Intron	SNP	A	TCGA-17-Z009-01A-01W-0746-08		12028754	66048494	119	48817											
ELSPBP1	64100	broad.mit.edu	37	chr19	48525313	48525313	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgctgggattaaaggcgCgaaccaccacactcagcccc	9	14	1	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48525313	T	T	48525313	1	4	42	0	1	0	0	0	0	0	0	0	5125	783	27	4		4	ELSPBP1	19	48525313	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08		48525313	10603670	120	48818											
ENTPD6	955	broad.mit.edu	37	chr20	25198382	25198382	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttctcccgcctcctctgCcctcctccttcatcctttaa	2	21	3	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25198382	T	T	25198382	1	4	42	0	1	0	0	0	0	0	0	0	5185	754	26	4		4	ENTPD6	20	25198382	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08		25198382	37827138	121	48819											
PPP1R16B	26051	broad.mit.edu	37	chr20	37518013	37518013	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcagtgcctggcatccgGgaagtgctaaataattgtta	11	8	1	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37518013	A	A	37518013	1	1	42	0	1	0	0	0	0	0	0	0	12467	1247	43	4		4	PPP1R16B	20	37518013	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	12319631	37518013	25507507	122	48820											
BAGE2	85319	broad.mit.edu	37	chr21	11037948	11037948	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaactccaaattactattgTgaattaacacttctccacta	2	10	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11037948	C	C	11037948	1	2	42	0	1	0	0	0	0	0	0	0	1297	1711	59	5		5	BAGE2	21	11037948	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08		11037948	37091947	123	48821											
BAGE2	85319	broad.mit.edu	37	chr21	11057305	11057306	+	Intron	INS	-	G	G													tcacagacctggagaagataINSggaaaaaaagcttttatcaa					rs150202290		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11057306	G	G	11057305	6	5	42	0	1	1	1	0	0	0	0	0	1297	435	15	0		0	BAGE2	21	11057305	Intron	INS	-	TCGA-17-Z009-01A-01W-0746-08	19357	11057305	37072590	124	48822											
BAGE2	85319	broad.mit.edu	37	chr21	11072284	11072284	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcactttgggaggcagaggtGgttggatcacttgaggtcag	17	6	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11072284	C	C	11072284	1	2	42	0	1	0	0	0	0	0	0	0	1297	1363	47	4		4	BAGE2	21	11072284	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	14979	11072284	37057611	125	48823											
N6AMT1	29104	broad.mit.edu	37	chr21	30252344	30252344	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataactgacaaattaatctTtaaaaataatctcccatgtt	2	7	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30252344	G	G	30252344	1	3	42	0	1	0	0	0	0	0	0	0	10208	1856	64	5		5	N6AMT1	21	30252344	Intron	SNP	T	TCGA-17-Z009-01A-01W-0746-08	19180060	30252344	17877551	126	48824											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46011808	46011808	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcacagaccgcctggcaGcaggggctggacacacagct	14	14	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46011808	T	T	46011808	4	4	42	1	0	0	0	0	0	1	0	0	8584	963	34	3	543	3	KRTAP10-6	21	46011808	Nonsense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08	15759464	46011808	2118087	127	48825											
TRIOBP	11078	broad.mit.edu	37	chr22	38119527	38119527	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaagaggacacccctaggGcctcatccacccaagaggac	9	17	1	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38119527	A	A	38119527	3	1	42	1	0	0	0	0	1	0	0	0	16678	1203	42	4	982	4	TRIOBP	22	38119527	Missense_Mutation	SNP	G	TCGA-17-Z009-01A-01W-0746-08		38119527	13185039	128	48826											
SAPS2	9701	broad.mit.edu	37	chr22	50836243	50836243	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcttttctctgaggagtGtgacttgggatgggggcagg	18	5	1	3			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50836243	A	A	50836243	1	1	42	0	1	0	0	0	0	0	0	0	13949	1392	48	4		4	SAPS2	22	50836243	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	12716716	50836243	468323	129	48827											
GPR64	10149	broad.mit.edu	37	chrX	19024427	19024427	+	Intron	DEL	A	-	-													cataattaatttactgaactAaaaaaaaaaaaagcaaaact							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19024427	-	-	19024427	6	5	42	0	1	1	0	1	0	0	0	0	6770	377	13	0		0	GPR64	23	19024427	Intron	DEL	A	TCGA-17-Z009-01A-01W-0746-08		19024427	136246133	130	48828											
FAM47A	158724	broad.mit.edu	37	chrX	34149595	34149595	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcttcctctcagaatcCagtttcagcagctgtcgtag	8	13	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34149595	T	T	34149595	2	4	42	1	0	0	0	0	0	0	0	1	5620	581	21	4		4	FAM47A	23	34149595	Silent	SNP	C	TCGA-17-Z009-01A-01W-0746-08	15125168	34149595	121120965	131	48829											
CXorf59	286464	broad.mit.edu	37	chrX	36122607	36122607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaataaaagttatctctccCaatttcaggttttggttcta	5	8	3	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36122607	A	A	36122607	1	1	42	0	1	0	0	0	0	0	0	0	4148	609	21	2		2	CXorf59	23	36122607	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	1973012	36122607	119147953	132	48830											
KIAA2022	340533	broad.mit.edu	37	chrX	73963452	73963452	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgtcctgaaaggattcatAtcgaattttcagggagcaga	10	6	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73963452	G	G	73963452	3	3	42	1	0	0	0	0	1	0	0	0	8339	449	16	5	3618	5	KIAA2022	23	73963452	Missense_Mutation	SNP	A	TCGA-17-Z009-01A-01W-0746-08	37840845	73963452	81307108	133	48831											
ATP7A	538	broad.mit.edu	37	chrX	77245190	77245190	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgagagtacctcaaactctCcctccagctcatctcttcag	5	15	5	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77245190	T	T	77245190	3	4	42	1	0	0	0	0	1	0	0	0	1194	855	30	4	1082	4	ATP7A	23	77245190	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	3281738	77245190	78025370	134	48832											
PCDH11X	27328	broad.mit.edu	37	chrX	91134023	91134023	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaactacacctactactttCaagcccgacagccctgattt	5	14	1	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91134023	T	T	91134023	2	4	42	1	0	0	0	0	0	0	0	1	11602	825	29	4		4	PCDH11X	23	91134023	Silent	SNP	C	TCGA-17-Z009-01A-01W-0746-08	13888833	91134023	64136537	135	48833											
PCDH19	57526	broad.mit.edu	37	chrX	99663117	99663117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaagtctgcacgccaaagCttcctgagtctggatcgtaa	10	11	2	1			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99663117	A	A	99663117	3	1	42	1	0	0	0	0	1	0	0	0	11608	797	28	3	2991	3	PCDH19	23	99663117	Missense_Mutation	SNP	C	TCGA-17-Z009-01A-01W-0746-08	8529094	99663117	55607443	136	48834											
IL1RAPL2	26280	broad.mit.edu	37	chrX	103892259	103892259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagagcagctctctctgGgtgattagttctccagcatc	11	11	3	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103892259	T	T	103892259	1	4	42	0	1	0	0	0	0	0	0	0	7732	1247	43	2		2	IL1RAPL2	23	103892259	Intron	SNP	G	TCGA-17-Z009-01A-01W-0746-08	4229142	103892259	51378301	137	48835											
DCX	1641	broad.mit.edu	37	chrX	110574146	110574147	+	Splice_Site	DNP	CC	AA	AA													actcaccgtcttggtcgttaCctgagtcagctggagacttg							TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	110574147	AA	AA	110574146	5	1	42	1	0	0	0	0	0	0	1	0	4351	521	18	3	177	3	DCX	23	110574146	Splice_Site	DNP	CC	TCGA-17-Z009-01A-01W-0746-08	6681887	110574146	44696414	138	48836											
ODZ1	10178	broad.mit.edu	37	chrX	123680734	123680734	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatatgtacctgctgtcaaAtgacacctcaggaggaatga	9	9	2	2			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123680734	T	T	123680734	3	4	42	1	0	0	0	0	1	0	0	0	10929	101	4	5	5629	5	ODZ1	23	123680734	Missense_Mutation	SNP	A	TCGA-17-Z009-01A-01W-0746-08	13106588	123680734	31589826	139	48837											
MAGEC3	139081	broad.mit.edu	37	chrX	140984614	140984614	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctcctcttccttgtcctCatcctcacccttgtcctcac	2	21	4	0			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140984614	A	A	140984614	1	1	42	0	1	0	0	0	0	0	0	0	9274	838	29	3		3	MAGEC3	23	140984614	Intron	SNP	C	TCGA-17-Z009-01A-01W-0746-08	17303880	140984614	14285946	140	48838											
PGD	5226	broad.mit.edu	37	chr1	10468241	10468241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaattggcaacatgggcGtgtctaagtgatgaagtgcg	14	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10468241	T	T	10468241	1	4	43	0	1	0	0	0	0	0	0	0	11882	1160	40	3		3	PGD	1	10468241	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08		10468241	238782380	1	48839											
PTCHD2	57540	broad.mit.edu	37	chr1	11574470	11574470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccaggttctctatggggGgacagacctgtttgactatg	13	8	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11574470	T	T	11574470	3	4	43	1	0	0	0	0	1	0	0	0	12839	1232	43	2	1350	2	PTCHD2	1	11574470	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1106229	11574470	237676151	2	48840											
PLOD1	5351	broad.mit.edu	37	chr1	12017260	12017260	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgtggtggtcagtggtActctgtctgttcttgctggt	14	8	4	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12017260	G	G	12017260	1	3	43	0	1	0	0	0	0	0	0	0	12196	406	14	5		5	PLOD1	1	12017260	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	442790	12017260	237233361	3	48841											
ALDH4A1	8659	broad.mit.edu	37	chr1	19201071	19201071	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtggcctcctgcacgaCgtccctacaaagcagagcag	10	14	0	1	rs150916561	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19201071	T	T	19201071	3	4	43	1	0	0	0	0	1	0	0	0	501	536	19	4	234	4	ALDH4A1	1	19201071	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7183811	19201071	230049550	4	48842											
ECE1	1889	broad.mit.edu	37	chr1	21546569	21546569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcgagaggggctgtggGgatcggtgatgaggccttcg	21	6	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21546569	T	T	21546569	3	4	43	1	0	0	0	0	1	0	0	0	4929	1232	43	2	124	2	ECE1	1	21546569	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2345498	21546569	227704052	5	48843											
RAP1GAP	5909	broad.mit.edu	37	chr1	21936606	21936606	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctgggaggctccaagagCgcccaccttgtagagggggc	15	14	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21936606	G	G	21936606	1	3	43	0	1	0	0	0	0	0	0	0	13145	783	27	4		4	RAP1GAP	1	21936606	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	390037	21936606	227314015	6	48844											
FGR	2268	broad.mit.edu	37	chr1	27943687	27943687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccagtcgccttggggCgtggcaccacccctaccttt	10	18	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27943687	A	A	27943687	1	1	43	0	1	0	0	0	0	0	0	0	5931	783	27	3		3	FGR	1	27943687	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	6007081	27943687	221306934	7	48845											
GMEB1	10691	broad.mit.edu	37	chr1	29030714	29030714	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtgccagaggacactttGatgttctggaaaggaatagc	12	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29030714	C	C	29030714	3	2	43	1	0	0	0	0	1	0	0	0	6551	1281	45	4	797	4	GMEB1	1	29030714	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1087027	29030714	220219907	8	48846											
C1orf94	84970	broad.mit.edu	37	chr1	34666017	34666017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggaaggaaggatgaaggGgtggatggatggaaggaagg	22	0	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34666017	T	T	34666017	1	4	43	0	1	0	0	0	0	0	0	0	2093	1247	43	2		2	C1orf94	1	34666017	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5635303	34666017	214584604	9	48847											
KIAA0754	643314	broad.mit.edu	37	chr1	39878284	39878284	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtggaaactgtgaatgatAcaaagcctgagctgaatgtg	13	5	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39878284	G	G	39878284	3	3	43	1	0	0	0	0	1	0	0	0	8262	391	14	5	2349	5	KIAA0754	1	39878284	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	5212267	39878284	209372337	10	48848											
SSBP3	23648	broad.mit.edu	37	chr1	54706519	54706519	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgcccctccaggtctctcTggcaacatgccccaccctcc	7	20	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54706519	G	G	54706519	1	3	43	0	1	0	0	0	0	0	0	0	15299	1595	55	5		5	SSBP3	1	54706519	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	14828235	54706519	194544102	11	48849											
C1orf168	199920	broad.mit.edu	37	chr1	57209895	57209895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtcttagagacccctaGgtctggagtttctttagttg	10	8	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57209895	T	T	57209895	3	4	43	1	0	0	0	0	1	0	0	0	2032	991	35	2	798	2	C1orf168	1	57209895	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2503376	57209895	192040726	12	48850											
TYW3	127253	broad.mit.edu	37	chr1	75229833	75229833	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttggccgtaatgtttcTagtaggttttataaagctgc	10	6	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75229833	C	C	75229833	1	2	43	0	1	0	0	0	0	0	0	0	16946	1537	53	5		5	TYW3	1	75229833	3'UTR	SNP	T	TCGA-17-Z010-01A-01W-0746-08	18019938	75229833	174020788	13	48851											
FAM73A	374986	broad.mit.edu	37	chr1	78332177	78332177	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaattggcagctgtaggAggggtaggagggactgtccc	19	6	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78332177	G	G	78332177	1	3	43	0	1	0	0	0	0	0	0	0	5668	319	11	5		5	FAM73A	1	78332177	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3102344	78332177	170918444	14	48852											
LPHN2	23266	broad.mit.edu	37	chr1	81968279	81968279	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcatcaacaagaagatctgGagggagatcaccaaaggcct	10	9	4	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81968279	T	T	81968279	1	4	43	0	1	0	0	0	0	0	0	0	9003	1189	41	3		3	LPHN2	1	81968279	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3636102	81968279	167282342	15	48853											
CCDC76	54482	broad.mit.edu	37	chr1	100609673	100609673	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actacctgtggtaggaattgGaaagcatctgtgtggtatgg	14	5	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100609673	A	A	100609673	3	1	43	1	0	0	0	0	1	0	0	0	2878	1174	41	4	825	4	CCDC76	1	100609673	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	18641394	100609673	148640948	16	48854											
KCNC4	3749	broad.mit.edu	37	chr1	110765573	110765573	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctgccccctgctctcctCccctgcccataggtagtggc	9	19	1	0	rs61784496		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110765573	A	A	110765573	1	1	43	0	1	0	0	0	0	0	0	0	8087	870	30	3		3	KCNC4	1	110765573	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	10155900	110765573	138485048	17	48855											
ADORA3	140	broad.mit.edu	37	chr1	112046029	112046029	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgagccagcaagatccgtCtgtagggccagtgggcctag	16	10	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112046029	T	T	112046029	1	4	43	0	1	0	0	0	0	0	0	0	329	928	32	4		4	ADORA3	1	112046029	5'UTR	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1280456	112046029	137204592	18	48856											
IGSF3	3321	broad.mit.edu	37	chr1	117208912	117208912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagccacttacccagcaCagccagacagctcagcaccg	9	17	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117208912	A	A	117208912	3	1	43	1	0	0	0	0	1	0	0	0	7671	478	17	3	3651	3	IGSF3	1	117208912	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5162883	117208912	132041709	19	48857											
NBPF9	400818	broad.mit.edu	37	chr1	144828751	144828751	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtgacaagtctccacctGgtgttccagatggaagtcat	11	10	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144828751	T	T	144828751	2	4	43	1	0	0	0	0	0	0	0	1	10294	1335	47	2		2	NBPF9	1	144828751	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	27619839	144828751	104421870	20	48858											
NBPF9	400818	broad.mit.edu	37	chr1	145118062	145118062	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaagaaaggacacctaattTattttgggaagaagtatgtt	9	3	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145118062	A	A	145118062	1	1	43	0	1	0	0	0	0	0	0	0	10294	1769	61	5		5	NBPF9	1	145118062	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	289311	145118062	104132559	21	48859											
NBPF10	100132406	broad.mit.edu	37	chr1	145235740	145235740	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcagatgccttgcttttcTtcatgatgccctattagctt	6	10	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145235740	C	C	145235740	1	2	43	0	1	0	0	0	0	0	0	0	10287	1624	56	5		5	NBPF10	1	145235740	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	117678	145235740	104014881	22	48860											
PRPF3	9129	broad.mit.edu	37	chr1	150298364	150298364	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttacaatttactgtctaatGagctcaggactgttttgaat	8	6	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150298364	A	A	150298364	1	1	43	0	1	0	0	0	0	0	0	0	12671	1305	45	4		4	PRPF3	1	150298364	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5062624	150298364	98952257	23	48861											
TARS2	80222	broad.mit.edu	37	chr1	150471495	150471495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggacccttgcctttgGgaccaggccgaacaggtgag	16	11	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150471495	T	T	150471495	3	4	43	1	0	0	0	0	1	0	0	0	15679	1241	43	2	1570	2	TARS2	1	150471495	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	173131	150471495	98779126	24	48862											
TDRKH	11022	broad.mit.edu	37	chr1	151747949	151747949	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctagagatcttggctacCagaggcttccagtcagcaca	10	11	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151747949	A	A	151747949	2	1	43	1	0	0	0	0	0	0	0	1	15859	581	21	2		2	TDRKH	1	151747949	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1276454	151747949	97502672	25	48863											
LCE3E	353145	broad.mit.edu	37	chr1	152538444	152538444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtggcagcagccagagcCcccgccttgctgaccactgc	11	18	0	2	rs145382354	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152538444	A	A	152538444	3	1	43	1	0	0	0	0	1	0	0	0	8745	623	22	2	41	2	LCE3E	1	152538444	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	790495	152538444	96712177	26	48864											
LCE1E	353135	broad.mit.edu	37	chr1	152759864	152759864	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcccacccccaaatgccCtccaaagtgtccccctaagt	6	18	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152759864	T	T	152759864	3	4	43	1	0	0	0	0	1	0	0	0	8735	681	24	4	91	4	LCE1E	1	152759864	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	221420	152759864	96490757	27	48865											
SPRR2B	6701	broad.mit.edu	37	chr1	153043031	153043031	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgagaagatgaaggtGgagctgtggaacgaggtgag	18	2	0	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153043031	A	A	153043031	1	1	43	0	1	0	0	0	0	0	0	0	15216	1363	47	4		4	SPRR2B	1	153043031	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	283167	153043031	96207590	28	48866											
PGLYRP3	114771	broad.mit.edu	37	chr1	153277302	153277302	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagaatttcaagagaaGggtgatcatcagagaaggta	12	3	3	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153277302	A	A	153277302	1	1	43	0	1	0	0	0	0	0	0	0	11890	1015	35	4		4	PGLYRP3	1	153277302	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	234271	153277302	95973319	29	48867											
C1orf189	388701	broad.mit.edu	37	chr1	154172104	154172104	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccattatttgtgttctcttgGagctggacttagctgtgaca	10	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154172104	A	A	154172104	1	1	43	0	1	0	0	0	0	0	0	0	2042	1189	41	4		4	C1orf189	1	154172104	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	894802	154172104	95078517	30	48868											
C1orf189	388701	broad.mit.edu	37	chr1	154172860	154172860	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgcaatgacacacactaaGagcttggaaaactcaatggg	10	8	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154172860	C	C	154172860	1	2	43	0	1	0	0	0	0	0	0	0	2042	957	33	4		4	C1orf189	1	154172860	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	756	154172860	95077761	31	48869											
KCNN3	3782	broad.mit.edu	37	chr1	154821810	154821810	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggcctgggagaacagccaTgtggcctcgcaggggccaat	15	12	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154821810	G	G	154821810	1	3	43	0	1	0	0	0	0	0	0	0	8150	1479	51	5		5	KCNN3	1	154821810	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	648950	154821810	94428811	32	48870											
ARHGEF2	9181	broad.mit.edu	37	chr1	155935421	155935421	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccccaaacagaggctcaCccagcaatgttggtggtaga	10	11	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155935421	A	A	155935421	5	1	43	1	0	0	0	0	0	0	1	0	905	521	18	3	2561	3	ARHGEF2	1	155935421	Splice_Site	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1113611	155935421	93315200	33	48871											
LMNA	4000	broad.mit.edu	37	chr1	156106683	156106683	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcctgggtgagcctccccGaccttcctcttccctatctt	8	17	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156106683	T	T	156106683	1	4	43	0	1	0	0	0	0	0	0	0	8922	1073	37	3		3	LMNA	1	156106683	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	171262	156106683	93143938	34	48872											
IQGAP3	128239	broad.mit.edu	37	chr1	156496383	156496383	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccctcatactggagctgCaggagatcctaggagggaag	13	10	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156496383	A	A	156496383	2	1	43	1	0	0	0	0	0	0	0	1	7886	697	25	3		3	IQGAP3	1	156496383	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	389700	156496383	92754238	35	48873											
BCAN	63827	broad.mit.edu	37	chr1	156616317	156616317	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggtctaggaattttggaGaggaagtggaagactctgag	16	3	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156616317	T	T	156616317	1	4	43	0	1	0	0	0	0	0	0	0	1350	957	33	3		3	BCAN	1	156616317	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	119934	156616317	92634304	36	48874											
SPTA1	6708	broad.mit.edu	37	chr1	158618447	158618447	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgtcatctgcttctctgGtatacaagagagtagagagt	11	7	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158618447	A	A	158618447	1	1	43	0	1	0	0	0	0	0	0	0	15234	1276	44	4		4	SPTA1	1	158618447	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2002130	158618447	90632174	37	48875											
LY9	4063	broad.mit.edu	37	chr1	160771579	160771579	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgactattcaattttcccaGcaccatttattgaaaagttg	6	8	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160771579	A	A	160771579	1	1	43	0	1	0	0	0	0	0	0	0	9189	985	34	4		4	LY9	1	160771579	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2153132	160771579	88479042	38	48876											
FCGR2B	2213	broad.mit.edu	37	chr1	161646500	161646501	+	Intron	INS	-	C	C													gaaatgccactttgcagataINStggggctgcttttcacactg					rs72510532		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161646501	C	C	161646500	6	5	43	0	1	1	1	0	0	0	0	0	5839	464	16	0		0	FCGR2B	1	161646500	Intron	INS	-	TCGA-17-Z010-01A-01W-0746-08	874921	161646500	87604121	39	48877											
TBX19	9095	broad.mit.edu	37	chr1	168262523	168262524	+	Intron	INS	-	TGTT	TGTT													tcagaatgaggaggtaagagINStgtgtgtgtgtgtgtgtgtg					rs140890330	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGTT	168262524	TGTT	TGTT	168262523	6	5	43	0	1	1	1	0	0	0	0	0	15776	1044	36	0		0	TBX19	1	168262523	Intron	INS	-	TCGA-17-Z010-01A-01W-0746-08	6616023	168262523	80988098	40	48878											
ASTN1	460	broad.mit.edu	37	chr1	177002042	177002042	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtaggctcttcccacaaaGagtcactgctccttctgcta	9	13	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177002042	T	T	177002042	1	4	43	0	1	0	0	0	0	0	0	0	1068	957	33	3		3	ASTN1	1	177002042	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	8739519	177002042	72248579	41	48879											
FAM5B	57795	broad.mit.edu	37	chr1	177249498	177249498	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccttaagaagggtgtcAgtgtgtgacttcttttgact	11	8	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177249498	G	G	177249498	1	3	43	0	1	0	0	0	0	0	0	0	5644	203	7	5		5	FAM5B	1	177249498	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	247456	177249498	72001123	42	48880											
CACNA1E	777	broad.mit.edu	37	chr1	181701996	181701996	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggcgcagccggcatcgccGcgtcaggacagaaggcaagg	16	13	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181701996	C	C	181701996	3	2	43	1	0	0	0	0	1	0	0	0	2568	1087	38	4	2852	4	CACNA1E	1	181701996	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4452498	181701996	67548625	43	48881											
CACNA1E	777	broad.mit.edu	37	chr1	181752856	181752856	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtagctgaggacatgacGgtccacttcacctccacact	8	15	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181752856	T	T	181752856	2	4	43	1	0	0	0	0	0	0	0	1	2568	1103	39	1		1	CACNA1E	1	181752856	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	50860	181752856	67497765	44	48882											
HMCN1	83872	broad.mit.edu	37	chr1	186106104	186106104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatattcatagtaaacaGtacctggggtgactcaaatc	9	7	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186106104	T	T	186106104	1	4	43	0	1	0	0	0	0	0	0	0	7287	1044	36	3		3	HMCN1	1	186106104	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4353248	186106104	63144517	45	48883											
HMCN1	83872	broad.mit.edu	37	chr1	186141192	186141192	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatcagcactgtaagaacaCccgtggtggctataagtgca	11	9	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186141192	G	G	186141192	3	3	43	1	0	0	0	0	1	0	0	0	7287	507	18	4	16149	4	HMCN1	1	186141192	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	35088	186141192	63109429	46	48884											
FAM5C	339479	broad.mit.edu	37	chr1	190067901	190067901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattgaggcgcatgtcattGctgataaaaatggcatggac	11	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067901	T	T	190067901	3	4	43	1	0	0	0	0	1	0	0	0	5645	1310	46	3	756	3	FAM5C	1	190067901	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3926709	190067901	59182720	47	48885											
CFH	3075	broad.mit.edu	37	chr1	196646637	196646637	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaccagtgacagcaccagaGaatggaaaaattgtcagtag	10	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196646637	A	A	196646637	2	1	43	1	0	0	0	0	0	0	0	1	3313	933	33	4		4	CFH	1	196646637	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6578736	196646637	52603984	48	48886											
CFH	3075	broad.mit.edu	37	chr1	196694367	196694367	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccaggatttacaatagttGgacctaattccgttcagtgc	8	9	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196694367	C	C	196694367	3	2	43	1	0	0	0	0	1	0	0	0	3313	1349	47	4	1877	4	CFH	1	196694367	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	47730	196694367	52556254	49	48887											
LGR6	59352	broad.mit.edu	37	chr1	202276138	202276138	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctaggcatgctcattgtcAtagcacatgtgtacaattta	8	8	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202276138	G	G	202276138	1	3	43	0	1	0	0	0	0	0	0	0	8830	232	8	5		5	LGR6	1	202276138	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	5581771	202276138	46974483	50	48888											
TMEM183A	92703	broad.mit.edu	37	chr1	202985299	202985299	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgtgttggggtttgactAatgaactcttgtatggtagg	13	3	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202985299	G	G	202985299	1	3	43	0	1	0	0	0	0	0	0	0	16225	377	13	5		5	TMEM183A	1	202985299	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	709161	202985299	46265322	51	48889											
PIK3C2B	5287	broad.mit.edu	37	chr1	204426904	204426904	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcaggggggcagctggttGagagcactggtgatctcagg	20	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204426904	A	A	204426904	2	1	43	1	0	0	0	0	0	0	0	1	12005	1277	45	4		4	PIK3C2B	1	204426904	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1441605	204426904	44823717	52	48890											
DYRK3	8444	broad.mit.edu	37	chr1	206821481	206821481	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttagcgtccagttggtacGcaagtttgcccagtccatct	9	11	1	0	rs17851298		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206821481	A	A	206821481	3	1	43	1	0	0	0	0	1	0	0	0	4897	1087	38	4	969	4	DYRK3	1	206821481	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2394577	206821481	42429140	53	48891											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209948414	209948414	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaagaacatgtttagAaagatgagtcctgtttagac	9	4	0	6			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209948414	G	G	209948414	1	3	43	0	1	0	0	0	0	0	0	0	16566	261	9	5		5	TRAF3IP3	1	209948414	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3126933	209948414	39302207	54	48892											
VASH2	79805	broad.mit.edu	37	chr1	213162022	213162022	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaactatttattaagaacTtgtgaattttatttttaagg	6	3	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213162022	A	A	213162022	1	1	43	0	1	0	0	0	0	0	0	0	17253	1624	56	5		5	VASH2	1	213162022	3'UTR	SNP	T	TCGA-17-Z010-01A-01W-0746-08	3213608	213162022	36088599	55	48893											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220368420	220368420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagcatgacagacttgcCttacagctaatggggtagct	13	8	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220368420	A	A	220368420	3	1	43	1	0	0	0	0	1	0	0	0	13044	695	24	2	3147	2	RAB3GAP2	1	220368420	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7206398	220368420	28882201	56	48894											
MARK1	4139	broad.mit.edu	37	chr1	220804410	220804410	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcgatggatgaatgttggtCatgaagaggaagaactaaag	13	3	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220804410	T	T	220804410	3	4	43	1	0	0	0	0	1	0	0	0	9404	826	29	4	981	4	MARK1	1	220804410	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	435990	220804410	28446211	57	48895											
ZNF678	339500	broad.mit.edu	37	chr1	227884504	227884504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccacatttattacacagGgttttctctatgtgagttct	6	8	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227884504	T	T	227884504	1	4	43	0	1	0	0	0	0	0	0	0	18212	1247	43	2		2	ZNF678	1	227884504	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	7080094	227884504	21366117	58	48896											
PCNXL2	80003	broad.mit.edu	37	chr1	233231426	233231426	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaatctttttattgccAggggtcaatgaaaagcttgc	8	6	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233231426	T	T	233231426	1	4	43	0	1	0	0	0	0	0	0	0	11686	203	7	5		5	PCNXL2	1	233231426	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	5346922	233231426	16019195	59	48897											
MTR	4548	broad.mit.edu	37	chr1	237057839	237057839	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcatggtcaaggcgctGggggaccggctggcagaggt	18	9	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237057839	A	A	237057839	2	1	43	1	0	0	0	0	0	0	0	1	10052	1335	47	4		4	MTR	1	237057839	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3826413	237057839	12192782	60	48898											
RYR2	6262	broad.mit.edu	37	chr1	237619805	237619805	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagatgaaccttcagtcagaCttctatttttaaatcaactt	4	8	4	3	rs143025438	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237619805	A	A	237619805	1	1	43	0	1	0	0	0	0	0	0	0	13880	580	20	3		3	RYR2	1	237619805	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	561966	237619805	11630816	61	48899											
RYR2	6262	broad.mit.edu	37	chr1	237948033	237948033	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccagaccccactcaggatGaggttagaggagatggggag	16	8	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237948033	T	T	237948033	4	4	43	1	0	0	0	0	0	1	0	0	13880	1291	45	3	13379	3	RYR2	1	237948033	Nonsense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	328228	237948033	11302588	62	48900											
RGS7	6000	broad.mit.edu	37	chr1	240934053	240934053	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacagtactccatatttaatCcccatttctcagctatcata	3	12	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240934053	T	T	240934053	1	4	43	0	1	0	0	0	0	0	0	0	13419	870	30	4		4	RGS7	1	240934053	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2986020	240934053	8316568	63	48901											
NLRP3	114548	broad.mit.edu	37	chr1	247592923	247592923	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacttccagtttttgccgGggcctcttttcagttctgag	9	12	4	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247592923	T	T	247592923	2	4	43	1	0	0	0	0	0	0	0	1	10573	1219	43	2		2	NLRP3	1	247592923	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6658870	247592923	1657698	64	48902											
C1orf150	148823	broad.mit.edu	37	chr1	247737489	247737489	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaagtgtgctacactgtCattaatcacatcccccatca	6	12	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247737489	G	G	247737489	2	3	43	1	0	0	0	0	0	0	0	1	2024	813	29	4		4	C1orf150	1	247737489	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	144566	247737489	1513132	65	48903											
OR2G2	81470	broad.mit.edu	37	chr1	247752266	247752266	+	Frame_Shift_Del	DEL	T	-	-													cacgtttaacgaggctgagcTttttgtggctagtatccttt							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247752266	-	-	247752266	7	5	43	1	0	1	0	1	0	0	0	0	11092	1609	56	0	607	0	OR2G2	1	247752266	Frame_Shift_Del	DEL	T	TCGA-17-Z010-01A-01W-0746-08	14777	247752266	1498355	66	48904											
OR14A16	284532	broad.mit.edu	37	chr1	247978921	247978921	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataatgaggacattccccatCagggcacacaaataaatcaa	6	10	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247978921	T	T	247978921	2	4	43	1	0	0	0	0	0	0	0	1	11039	813	29	4		4	OR14A16	1	247978921	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	226655	247978921	1271700	67	48905											
TRIM58	25893	broad.mit.edu	37	chr1	248039174	248039174	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accagtcctttctttcctttCacctggtccaccacattctt	3	16	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248039174	T	T	248039174	1	4	43	0	1	0	0	0	0	0	0	0	16656	841	29	4		4	TRIM58	1	248039174	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	60253	248039174	1211447	68	48906											
OR2L8	391190	broad.mit.edu	37	chr1	248112211	248112211	+	Frame_Shift_Del	DEL	C	-	-													tcatcttattggggctgtttCcaccatcaagaattgacctt							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248112211	-	-	248112211	7	5	43	1	0	1	0	1	0	0	0	0	11103	855	30	0	54	0	OR2L8	1	248112211	Frame_Shift_Del	DEL	C	TCGA-17-Z010-01A-01W-0746-08	73037	248112211	1138410	69	48907											
OR2L13	284521	broad.mit.edu	37	chr1	248186176	248186176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattcagaatatcttctcGgtgaaaatgtagacatacgt	9	6	3	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248186176	T	T	248186176	1	4	43	0	1	0	0	0	0	0	0	0	11100	1131	39	1		1	OR2L13	1	248186176	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	73965	248186176	1064445	70	48908											
OR2T12	127064	broad.mit.edu	37	chr1	248458257	248458257	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggacaggatgagggaaaaGgggaccaggagcattaacac	16	6	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248458257	T	T	248458257	2	4	43	1	0	0	0	0	0	0	0	1	11113	987	35	2		2	OR2T12	1	248458257	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	272081	248458257	792364	71	48909											
OR2T27	403239	broad.mit.edu	37	chr1	248814011	248814011	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggctgagcaggaagtacaTgggggtgtggaggcgggagt	21	5	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248814011	A	A	248814011	3	1	43	1	0	0	0	0	1	0	0	0	11115	1464	51	5	781	5	OR2T27	1	248814011	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	355754	248814011	436610	72	48910											
MYT1L	23040	broad.mit.edu	37	chr2	1893091	1893091	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggcaagtcccagcagtcGccctcgcccagctggaaaca	11	16	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1893091	T	T	1893091	2	4	43	1	0	0	0	0	0	0	0	1	10201	1074	38	3		3	MYT1L	2	1893091	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08		1893091	241306282	73	48911											
APOB	338	broad.mit.edu	37	chr2	21233079	21233079	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggattgtttttactaaatTtacacggatatgatagtgct	8	4	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21233079	G	G	21233079	3	3	43	1	0	0	0	0	1	0	0	0	787	1841	64	5	7046	5	APOB	2	21233079	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	19339988	21233079	221966294	74	48912											
DPYSL5	56896	broad.mit.edu	37	chr2	27162815	27162815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgcctgcttcccacacGgaggattttccctatatcta	7	13	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27162815	T	T	27162815	1	4	43	0	1	0	0	0	0	0	0	0	4790	1131	39	1		1	DPYSL5	2	27162815	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5929736	27162815	216036558	75	48913											
CGREF1	10669	broad.mit.edu	37	chr2	27321927	27321927	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaaaccacgttcccGtgggacagtgagatgctacg	11	9	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27321927	T	T	27321927	1	4	43	0	1	0	0	0	0	0	0	0	3335	1160	40	3		3	CGREF1	2	27321927	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	159112	27321927	215877446	76	48914											
TRMT61B	55006	broad.mit.edu	37	chr2	29075411	29075411	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagtctgattccgtttaaAtaaagcataagttttcttat	5	6	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29075411	T	T	29075411	1	4	43	0	1	0	0	0	0	0	0	0	16695	116	4	5		5	TRMT61B	2	29075411	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1753484	29075411	214123962	77	48915											
CLIP4	79745	broad.mit.edu	37	chr2	29397158	29397158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatataatagaacatctacAgaagaagtgataaaatatca	5	4	2	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29397158	G	G	29397158	1	3	43	0	1	0	0	0	0	0	0	0	3567	203	7	5		5	CLIP4	2	29397158	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	321747	29397158	213802215	78	48916											
ALK	238	broad.mit.edu	37	chr2	29973499	29973499	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaacggaacagaatgggAaggaaggaaggaaggaagga	18	2	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29973499	G	G	29973499	1	3	43	0	1	0	0	0	0	0	0	0	525	261	9	5		5	ALK	2	29973499	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	576341	29973499	213225874	79	48917											
YIPF4	84272	broad.mit.edu	37	chr2	32530586	32530586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttttgggctgcctacaGtgctgcttcattgttagtgg	13	7	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32530586	T	T	32530586	3	4	43	1	0	0	0	0	1	0	0	0	17607	1029	36	3	648	3	YIPF4	2	32530586	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2557087	32530586	210668787	80	48918											
C2orf56	55471	broad.mit.edu	37	chr2	37463238	37463238	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctattttctctttttactcaGggttattatgtgtaccgtga	7	7	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37463238	C	C	37463238	5	2	43	1	0	0	0	0	0	0	1	0	2199	1014	35	4	226	4	C2orf56	2	37463238	Splice_Site	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4932652	37463238	205736135	81	48919											
THADA	63892	broad.mit.edu	37	chr2	43735790	43735790	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcctacagataaatacctgTatgtagaaaggaattccagc	8	8	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43735790	A	A	43735790	2	1	43	1	0	0	0	0	0	0	0	1	15963	1628	57	5		5	THADA	2	43735790	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	6272552	43735790	199463583	82	48920											
ADD2	119	broad.mit.edu	37	chr2	70900204	70900204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgggcagggaaataaaGccttttaaaaattacttttt	9	4	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70900204	T	T	70900204	1	4	43	0	1	0	0	0	0	0	0	0	305	986	34	3		3	ADD2	2	70900204	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	27164414	70900204	172299169	83	48921											
NAT8B	51471	broad.mit.edu	37	chr2	73928256	73928256	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacgagggccagaatccaGgagccagagaccaggagtag	14	10	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73928256	T	T	73928256	2	4	43	1	0	0	0	0	0	0	0	1	10274	987	35	2		2	NAT8B	2	73928256	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3028052	73928256	169271117	84	48922											
CTNNA2	1496	broad.mit.edu	37	chr2	79878803	79878803	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtaagggatgctttgaaaCcactttgttatatatgtgtt	10	4	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79878803	T	T	79878803	1	4	43	0	1	0	0	0	0	0	0	0	4047	522	18	4		4	CTNNA2	2	79878803	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5950547	79878803	163320570	85	48923											
MRPL35	51318	broad.mit.edu	37	chr2	86433236	86433236	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctatctttacaggaatcctAcggcccctgaatattttggc	7	12	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86433236	T	T	86433236	2	4	43	1	0	0	0	0	0	0	0	1	9892	378	14	5		5	MRPL35	2	86433236	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08	6554433	86433236	156766137	86	48924											
RMND5A	64795	broad.mit.edu	37	chr2	87513828	87513828	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagtagaggggcatccagTgaggggagaggaaagcagga	19	5	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87513828	A	A	87513828	1	1	43	0	1	0	0	0	0	0	0	0	13508	1711	59	5		5	RMND5A	2	87513828	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1080592	87513828	155685545	87	48925											
SEMA4C	54910	broad.mit.edu	37	chr2	97531534	97531534	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtccggttagtgagagCgcgagggccagaatgggagg	20	6	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97531534	T	T	97531534	1	4	43	0	1	0	0	0	0	0	0	0	14146	783	27	4		4	SEMA4C	2	97531534	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	10017706	97531534	145667839	88	48926											
ZAP70	7535	broad.mit.edu	37	chr2	98351815	98351815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgcaccagctggacaaCccctacatcgtgcggctcat	8	15	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98351815	A	A	98351815	3	1	43	1	0	0	0	0	1	0	0	0	17641	506	18	3	1215	3	ZAP70	2	98351815	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	820281	98351815	144847558	89	48927											
GPR148	344561	broad.mit.edu	37	chr2	131487730	131487730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatggtccggggccacctcCcatccaggaggcaccaggcc	13	17	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131487730	A	A	131487730	3	1	43	1	0	0	0	0	1	0	0	0	6718	623	22	2	1008	2	GPR148	2	131487730	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	33135915	131487730	111711643	90	48928											
ARHGEF4	50649	broad.mit.edu	37	chr2	131785476	131785477	+	Intron	DNP	CC	AT	AT													tgttctcccctcagcccttcCcagcccagccccctttgccc							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	131785477	AT	AT	131785476	1	1	43	0	1	0	0	0	0	0	0	0	910	638	22	2		2	ARHGEF4	2	131785476	Intron	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	297746	131785476	111413897	91	48929											
PLEKHB2	55041	broad.mit.edu	37	chr2	132093114	132093114	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcactgccacccagcggctCttatggctagtgagatgcca	10	13	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132093114	G	G	132093114	1	3	43	0	1	0	0	0	0	0	0	0	12160	928	32	4		4	PLEKHB2	2	132093114	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	307638	132093114	111106259	92	48930											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110018	132110018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccaccaccagggagtccCacataggtaccaggtgatga	11	14	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132110018	A	A	132110018	1	1	43	0	1	0	0	0	0	0	0	0	12160	609	21	2		2	PLEKHB2	2	132110018	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	16904	132110018	111089355	93	48931											
LCT	3938	broad.mit.edu	37	chr2	136561508	136561508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggacttacctggagctGctgttccgtagccatagccc	12	13	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136561508	T	T	136561508	3	4	43	1	0	0	0	0	1	0	0	0	8765	1319	46	3	1156	3	LCT	2	136561508	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4451490	136561508	106637865	94	48932											
LRP1B	53353	broad.mit.edu	37	chr2	141083260	141083260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaagtaaagtatccataCttacatttttgtattagtat	5	5	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141083260	A	A	141083260	1	1	43	0	1	0	0	0	0	0	0	0	9042	580	20	3		3	LRP1B	2	141083260	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4521752	141083260	102116113	95	48933											
LRP1B	53353	broad.mit.edu	37	chr2	141707834	141707834	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaattgatctgggcttcatCactgaagtccccacagtcat	7	12	4	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141707834	A	A	141707834	3	1	43	1	0	0	0	0	1	0	0	0	9042	826	29	3	10981	3	LRP1B	2	141707834	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	624574	141707834	101491539	96	48934											
LYPD6B	130576	broad.mit.edu	37	chr2	150071214	150071214	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgggtctttgtgcttcCattgctgtgatgccaccatt	10	11	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150071214	T	T	150071214	3	4	43	1	0	0	0	0	1	0	0	0	9203	594	21	4	636	4	LYPD6B	2	150071214	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8363380	150071214	93128159	97	48935											
TANC1	85461	broad.mit.edu	37	chr2	160043384	160043384	+	Intron	DEL	T	-	-													ggcagatctgtctctgattgTttccaagatctgtctcgatt							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160043384	-	-	160043384	6	5	43	0	1	1	0	1	0	0	0	0	15663	1740	60	0		0	TANC1	2	160043384	Intron	DEL	T	TCGA-17-Z010-01A-01W-0746-08	9972170	160043384	83155989	98	48936											
SCN3A	6328	broad.mit.edu	37	chr2	165986331	165986331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattctctgagtgctaataGggggatttcagtctaggcca	11	7	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165986331	T	T	165986331	1	4	43	0	1	0	0	0	0	0	0	0	14031	1015	35	2		2	SCN3A	2	165986331	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5942947	165986331	77213042	99	48937											
STK39	27347	broad.mit.edu	37	chr2	168931721	168931721	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttatgaaggtgaccactTgacccaggaactcttcttac	8	10	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168931721	A	A	168931721	2	1	43	1	0	0	0	0	0	0	0	1	15423	1799	63	5		5	STK39	2	168931721	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	2945390	168931721	74267652	100	48938											
LRP2	4036	broad.mit.edu	37	chr2	170029576	170029576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtgcactttcttgtccCtccctccactcccctgtggc	6	18	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170029576	A	A	170029576	1	1	43	0	1	0	0	0	0	0	0	0	9043	696	24	2		2	LRP2	2	170029576	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1097855	170029576	73169797	101	48939											
MYO3B	140469	broad.mit.edu	37	chr2	171259201	171259201	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaacaaatagtttgagaCataaactgcttcttttctta	5	6	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171259201	T	T	171259201	1	4	43	0	1	0	0	0	0	0	0	0	10171	493	17	4		4	MYO3B	2	171259201	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1229625	171259201	71940172	102	48940											
MYO3B	140469	broad.mit.edu	37	chr2	171264049	171264049	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caactagacaataagttaagAtaaactggtctgtcaacatc	6	8	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171264049	G	G	171264049	1	3	43	0	1	0	0	0	0	0	0	0	10171	348	12	5		5	MYO3B	2	171264049	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	4848	171264049	71935324	103	48941											
MYO3B	140469	broad.mit.edu	37	chr2	171509646	171509647	+	3'UTR	DNP	CC	AA	AA													cattaaattgtgcttcctaaCcctaaatctgtccagagtag							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	171509647	AA	AA	171509646	1	1	43	0	1	0	0	0	0	0	0	0	10171	522	18	3		3	MYO3B	2	171509646	3'UTR	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	245597	171509646	71689727	104	48942											
HOXD10	3236	broad.mit.edu	37	chr2	176982041	176982041	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtcagacctacgccacCgggaaaacccaagagtacaa	9	13	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176982041	A	A	176982041	2	1	43	1	0	0	0	0	0	0	0	1	7386	639	23	1		1	HOXD10	2	176982041	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5472395	176982041	66217332	105	48943											
OSBPL6	114880	broad.mit.edu	37	chr2	179237002	179237002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagtacctattttttaGcatctaaatttactgcatat	5	7	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179237002	T	T	179237002	1	4	43	0	1	0	0	0	0	0	0	0	11375	986	34	3		3	OSBPL6	2	179237002	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2254961	179237002	63962371	106	48944											
TTN	7273	broad.mit.edu	37	chr2	179424246	179424246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcactggtgctccaccatcGttttcaggaacatcccagga	8	13	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179424246	T	T	179424246	3	4	43	1	0	0	0	0	1	0	0	0	16861	1136	40	3	21514	3	TTN	2	179424246	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	187244	179424246	63775127	107	48945											
TTN	7273	broad.mit.edu	37	chr2	179486302	179486302	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaatgaccaggattctcttCcgtccttcagtcagtatttc	7	11	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179486302	T	T	179486302	2	4	43	1	0	0	0	0	0	0	0	1	16861	842	30	4		4	TTN	2	179486302	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	62056	179486302	63713071	108	48946											
TTN	7273	broad.mit.edu	37	chr2	179599399	179599399	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaaagggaaatcttttctCagaaaaatactggatggaaa	8	4	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179599399	T	T	179599399	1	4	43	0	1	0	0	0	0	0	0	0	16861	841	29	4		4	TTN	2	179599399	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	113097	179599399	63599974	109	48947											
PGAP1	80055	broad.mit.edu	37	chr2	197791263	197791263	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgaagccgaagaagacatcCcacagccccagggttgccag	11	14	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197791263	G	G	197791263	3	3	43	1	0	0	0	0	1	0	0	0	11872	624	22	4	2798	4	PGAP1	2	197791263	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	18191864	197791263	45408110	110	48948											
PLCL1	5334	broad.mit.edu	37	chr2	198840394	198840394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaattagctggatgtgGtggcacatgcctatagttcc	10	7	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198840394	T	T	198840394	1	4	43	0	1	0	0	0	0	0	0	0	12134	1276	44	3		3	PLCL1	2	198840394	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1049131	198840394	44358979	111	48949											
SUMO1	7341	broad.mit.edu	37	chr2	203084823	203084823	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtcctcagttgaaggttTtgcctcctgaaagaaaatta	8	8	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203084823	C	C	203084823	3	2	43	1	0	0	0	0	1	0	0	0	15505	1850	64	5	302	5	SUMO1	2	203084823	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	4244429	203084823	40114550	112	48950											
ABI2	10152	broad.mit.edu	37	chr2	204245042	204245042	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagccaaccttgaacgaCcagttcgttatattagaaaa	6	11	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204245042	T	T	204245042	3	4	43	1	0	0	0	0	1	0	0	0	89	507	18	4	407	4	ABI2	2	204245042	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1160219	204245042	38954331	113	48951											
FASTKD2	22868	broad.mit.edu	37	chr2	207651527	207651527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcttctgaaaacttattgGatgcagtatattcattttgc	6	6	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207651527	T	T	207651527	3	4	43	1	0	0	0	0	1	0	0	0	5743	1174	41	3	1524	3	FASTKD2	2	207651527	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3406485	207651527	35547846	114	48952											
CPS1	1373	broad.mit.edu	37	chr2	211527852	211527852	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttccaacaggctccCatgttttcctggccccggtt	7	13	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211527852	A	A	211527852	2	1	43	1	0	0	0	0	0	0	0	1	3855	581	21	2		2	CPS1	2	211527852	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3876325	211527852	31671521	115	48953											
ERBB4	2066	broad.mit.edu	37	chr2	212566794	212566794	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataataacacaggttgctgtTgtcagtaatatagatgtttc	8	5	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212566794	G	G	212566794	3	3	43	1	0	0	0	0	1	0	0	0	5251	1812	63	5	2607	5	ERBB4	2	212566794	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1038942	212566794	30632579	116	48954											
ABCA12	26154	broad.mit.edu	37	chr2	215823182	215823182	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgattaaactgctgattctaGagtgagcaatagggagagga	13	5	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215823182	A	A	215823182	1	1	43	0	1	0	0	0	0	0	0	0	30	957	33	4		4	ABCA12	2	215823182	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3256388	215823182	27376191	117	48955											
CYP27A1	1593	broad.mit.edu	37	chr2	219677164	219677164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacccttgctgggagaggGgctggggaagggaatgggtc	21	6	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219677164	T	T	219677164	1	4	43	0	1	0	0	0	0	0	0	0	4191	1247	43	2		2	CYP27A1	2	219677164	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3853982	219677164	23522209	118	48956											
CCDC108	255101	broad.mit.edu	37	chr2	219903373	219903373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagggaggagactctcatGgccatccttgtcatggagga	14	9	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219903373	T	T	219903373	1	4	43	0	1	0	0	0	0	0	0	0	2769	1363	47	2		2	CCDC108	2	219903373	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	226209	219903373	23296000	119	48957											
ABCB6	10058	broad.mit.edu	37	chr2	220078715	220078715	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggaatgtcctatacacaaTggccatcagtgagtccaaac	9	10	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220078715	A	A	220078715	1	1	43	0	1	0	0	0	0	0	0	0	45	1479	51	5		5	ABCB6	2	220078715	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	175342	220078715	23120658	120	48958											
SPEG	10290	broad.mit.edu	37	chr2	220338542	220338542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcggatctgccgggtgaGccgccgggacatgggggccc	17	13	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220338542	T	T	220338542	3	4	43	1	0	0	0	0	1	0	0	0	15154	971	34	3	4446	3	SPEG	2	220338542	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	259827	220338542	22860831	121	48959											
ACSL3	2181	broad.mit.edu	37	chr2	223786246	223786246	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatatggctaaattagtccCtcagagtctgtttgtagtag	9	6	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223786246	T	T	223786246	1	4	43	0	1	0	0	0	0	0	0	0	178	696	24	4		4	ACSL3	2	223786246	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3447704	223786246	19413127	122	48960											
ATG16L1	55054	broad.mit.edu	37	chr2	234178781	234178782	+	Intron	INS	-	T	T													tcttaaaagttttgtttttaINStttttttttttgtttggttt					rs72400208		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234178782	T	T	234178781	6	5	43	0	1	1	1	0	0	0	0	0	1095	464	16	0		0	ATG16L1	2	234178781	Intron	INS	-	TCGA-17-Z010-01A-01W-0746-08	10392535	234178781	9020592	123	48961											
UGT1A6	54578	broad.mit.edu	37	chr2	234602084	234602084	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaggagagcaagtttgAtgctcttttcacagacccag	9	9	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234602084	T	T	234602084	3	4	43	1	0	0	0	0	1	0	0	0	17075	333	12	5	436	5	UGT1A6	2	234602084	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	423303	234602084	8597289	124	48962											
AGAP1	116987	broad.mit.edu	37	chr2	236836990	236836990	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaaggggaagagaagcaCacaggacagtgcaggcacca	15	8	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236836990	T	T	236836990	1	4	43	0	1	0	0	0	0	0	0	0	366	493	17	4		4	AGAP1	2	236836990	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2234906	236836990	6362383	125	48963											
COL6A3	1293	broad.mit.edu	37	chr2	238274590	238274590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattctgttcaagatggcGtccaccttggactcgaagcc	10	12	2	2	rs144592806		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238274590	T	T	238274590	3	4	43	1	0	0	0	0	1	0	0	0	3733	1136	40	3	4076	3	COL6A3	2	238274590	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1437600	238274590	4924783	126	48964											
CNTN4	152330	broad.mit.edu	37	chr3	3080704	3080704	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtaaatgaatcacagaAtaaaaggaacgtacacgcat	10	6	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3080704	T	T	3080704	1	4	43	0	1	0	0	0	0	0	0	0	3675	116	4	5		5	CNTN4	3	3080704	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08		3080704	194941726	127	48965											
ATP2B2	491	broad.mit.edu	37	chr3	10382001	10382001	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgcagtggagagcagctGaatggcttccctccaaactg	12	11	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10382001	C	C	10382001	3	2	43	1	0	0	0	0	1	0	0	0	1144	1281	45	4	581	4	ATP2B2	3	10382001	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	7301297	10382001	187640429	128	48966											
TMEM40	55287	broad.mit.edu	37	chr3	12778341	12778341	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggaaaaactcatctgtgaAggcaggggtgggcaatcact	13	7	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12778341	T	T	12778341	1	4	43	0	1	0	0	0	0	0	0	0	16286	87	3	5		5	TMEM40	3	12778341	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	2396340	12778341	185244089	129	48967											
GRIP2	80852	broad.mit.edu	37	chr3	14552740	14552740	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgccgcaggatttgcacGgcgtcctccatggggcagtt	13	13	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14552740	T	T	14552740	2	4	43	1	0	0	0	0	0	0	0	1	6854	1103	39	1		1	GRIP2	3	14552740	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1774399	14552740	183469690	130	48968											
PLCL2	23228	broad.mit.edu	37	chr3	17051619	17051619	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacatacacttgatatgttaGaaagtagccaagataacatg	7	6	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17051619	C	C	17051619	3	2	43	1	0	0	0	0	1	0	0	0	12135	943	33	4	781	4	PLCL2	3	17051619	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2498879	17051619	180970811	131	48969											
TBC1D5	9779	broad.mit.edu	37	chr3	17446185	17446185	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaaagacgaactttaCcccttcatcctgtgaaagag	7	10	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17446185	T	T	17446185	5	4	43	1	0	0	0	0	0	0	1	0	15745	521	18	4	2079	4	TBC1D5	3	17446185	Splice_Site	SNP	C	TCGA-17-Z010-01A-01W-0746-08	394566	17446185	180576245	132	48970											
KCNH8	131096	broad.mit.edu	37	chr3	19492795	19492795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctctttctgtgctccggGggagtatctgctgcgtcaag	12	11	4	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19492795	T	T	19492795	3	4	43	1	0	0	0	0	1	0	0	0	8108	1232	43	2	1762	2	KCNH8	3	19492795	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2046610	19492795	178529635	133	48971											
MYRIP	25924	broad.mit.edu	37	chr3	40054198	40054198	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccaccttttaccctgcctCatagagtaagctagaacatc	6	13	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40054198	G	G	40054198	1	3	43	0	1	0	0	0	0	0	0	0	10194	841	29	4		4	MYRIP	3	40054198	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	20561403	40054198	157968232	134	48972											
LAMB2	3913	broad.mit.edu	37	chr3	49158970	49158970	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcacaccttgggccttgCgctcagctagggccttcacc	10	17	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49158970	T	T	49158970	3	4	43	1	0	0	0	0	1	0	0	0	8683	768	27	4	248	4	LAMB2	3	49158970	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	9104772	49158970	148863460	135	48973											
VPRBP	9730	broad.mit.edu	37	chr3	51457540	51457540	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgcagggtgatggcctctCtctgataaaactgattctac	9	9	3	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51457540	A	A	51457540	4	1	43	1	0	0	0	0	0	1	0	0	17312	922	32	3	1683	3	VPRBP	3	51457540	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2298570	51457540	146564890	136	48974											
CACNA2D3	55799	broad.mit.edu	37	chr3	55107633	55107633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacggaaaccagtaaggGgtatcagtggtaaggaaacc	12	8	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55107633	T	T	55107633	1	4	43	0	1	0	0	0	0	0	0	0	2576	1247	43	2		2	CACNA2D3	3	55107633	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3650093	55107633	142914797	137	48975											
PTPRG	5793	broad.mit.edu	37	chr3	61548019	61548019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaaaatcaccagttccGtgctccattatgtcgtgtgc	8	12	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61548019	T	T	61548019	3	4	43	1	0	0	0	0	1	0	0	0	12910	1145	40	3	60	3	PTPRG	3	61548019	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6440386	61548019	136474411	138	48976											
MAGI1	9223	broad.mit.edu	37	chr3	65455878	65455878	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatcccttaaatgtaatttAcattggcaactgctagacag	6	9	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65455878	C	C	65455878	1	2	43	0	1	0	0	0	0	0	0	0	9282	406	14	5		5	MAGI1	3	65455878	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3907859	65455878	132566552	139	48977											
TMF1	7110	broad.mit.edu	37	chr3	69087813	69087813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatttcacggctcagagCagcttcctgtgcctcactat	7	13	4	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69087813	A	A	69087813	3	1	43	1	0	0	0	0	1	0	0	0	16351	710	25	3	1268	3	TMF1	3	69087813	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3631935	69087813	128934617	140	48978											
GABRR3	200959	broad.mit.edu	37	chr3	97742983	97742983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccgaggtgggtggatcaCctgaagtcaggagtttgaga	17	6	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97742983	A	A	97742983	1	1	43	0	1	0	0	0	0	0	0	0	6238	522	18	3		3	GABRR3	3	97742983	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	28655170	97742983	100279447	141	48979											
GPR128	84873	broad.mit.edu	37	chr3	100384183	100384183	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaaataccctcaagctcCtcatccagtaccaccaggcg	8	15	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100384183	T	T	100384183	1	4	43	0	1	0	0	0	0	0	0	0	6706	696	24	4		4	GPR128	3	100384183	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2641200	100384183	97638247	142	48980											
ABI3BP	25890	broad.mit.edu	37	chr3	100511565	100511565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctagttcagttgttcGtggaatcttagttgtgaaag	11	5	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100511565	T	T	100511565	2	4	43	1	0	0	0	0	0	0	0	1	91	1153	40	3		3	ABI3BP	3	100511565	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	127382	100511565	97510865	143	48981											
IMPG2	50939	broad.mit.edu	37	chr3	100963518	100963518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgaagatgttaaggacaCatcagagtcttccatggatg	12	6	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100963518	A	A	100963518	3	1	43	1	0	0	0	0	1	0	0	0	7799	478	17	3	2096	3	IMPG2	3	100963518	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	451953	100963518	97058912	144	48982											
SENP7	57337	broad.mit.edu	37	chr3	101058994	101058994	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctccttcttctaaacactCcagatcttcattagttactc	2	14	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101058994	G	G	101058994	3	3	43	1	0	0	0	0	1	0	0	0	14164	864	30	4	886	4	SENP7	3	101058994	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	95476	101058994	96963436	145	48983											
MYH15	22989	broad.mit.edu	37	chr3	108124234	108124234	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaagctttctttcaagttCtgctttagcttccaagagtt	7	8	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108124234	G	G	108124234	3	3	43	1	0	0	0	0	1	0	0	0	10128	922	32	4	1129	4	MYH15	3	108124234	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7065240	108124234	89898196	146	48984											
MYH15	22989	broad.mit.edu	37	chr3	108188791	108188791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttccgcccccatttccCatcctctgatagggcctaag	8	16	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108188791	A	A	108188791	1	1	43	0	1	0	0	0	0	0	0	0	10128	609	21	2		2	MYH15	3	108188791	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	64557	108188791	89833639	147	48985											
BOC	91653	broad.mit.edu	37	chr3	112991422	112991422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccggctacaacaagacgcGcttcctgctgagcaacctcc	8	17	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112991422	T	T	112991422	3	4	43	1	0	0	0	0	1	0	0	0	1487	1087	38	3	851	3	BOC	3	112991422	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4802631	112991422	85031008	148	48986											
GRAMD1C	54762	broad.mit.edu	37	chr3	113588524	113588524	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtatatgtaataaaatttaAgcctttatgctagacagaat	6	4	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113588524	T	T	113588524	1	4	43	0	1	0	0	0	0	0	0	0	6815	87	3	5		5	GRAMD1C	3	113588524	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	597102	113588524	84433906	149	48987											
POLQ	10721	broad.mit.edu	37	chr3	121265496	121265496	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaccattcattacctagTtgcataattcatttcaccaa	5	10	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121265496	C	C	121265496	1	2	43	0	1	0	0	0	0	0	0	0	12303	1740	60	5		5	POLQ	3	121265496	5'Flank	SNP	T	TCGA-17-Z010-01A-01W-0746-08	7676972	121265496	76756934	150	48988											
ADCY5	111	broad.mit.edu	37	chr3	123046446	123046446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggagcccctcagcccccCggcccccagcccacagaccc	9	23	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123046446	A	A	123046446	1	1	43	0	1	0	0	0	0	0	0	0	297	667	23	1		1	ADCY5	3	123046446	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1780950	123046446	74975984	151	48989											
ACAD9	28976	broad.mit.edu	37	chr3	128631436	128631436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atatctgtgcccaccctctgGacaggacatgctgaggcagg	12	12	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128631436	T	T	128631436	3	4	43	1	0	0	0	0	1	0	0	0	111	1174	41	3	1922	3	ACAD9	3	128631436	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5584990	128631436	69390994	152	48990											
MSL2	55167	broad.mit.edu	37	chr3	135871276	135871276	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaacacaaagtaaaggaTgaatctgagggtttttctgt	10	5	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135871276	A	A	135871276	2	1	43	1	0	0	0	0	0	0	0	1	9972	1451	51	5		5	MSL2	3	135871276	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	7239840	135871276	62151154	153	48991											
PCCB	5096	broad.mit.edu	37	chr3	136019916	136019916	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaattgtccctttggaatCaaccaaagcctacaacatgg	6	12	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136019916	T	T	136019916	3	4	43	1	0	0	0	0	1	0	0	0	11599	838	29	4	1027	4	PCCB	3	136019916	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	148640	136019916	62002514	154	48992											
ATR	545	broad.mit.edu	37	chr3	142279274	142279274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccataatatgctcttttGgttcatgtccacatgtttaa	5	9	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142279274	T	T	142279274	3	4	43	1	0	0	0	0	1	0	0	0	1208	1357	47	2	6730	2	ATR	3	142279274	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6259358	142279274	55743156	155	48993											
AGTR1	185	broad.mit.edu	37	chr3	148459755	148459755	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggggaaaaaatttaaaagAtattttctccagcttctaaa	6	6	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148459755	T	T	148459755	3	4	43	1	0	0	0	0	1	0	0	0	401	330	12	5	935	5	AGTR1	3	148459755	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	6180481	148459755	49562675	156	48994											
GMPS	8833	broad.mit.edu	37	chr3	155649577	155649577	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgtcgttcctacagttaCgtgtgtggaatctccagtaa	10	9	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155649577	A	A	155649577	4	1	43	1	0	0	0	0	0	1	0	0	6562	547	19	3	1634	3	GMPS	3	155649577	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7189822	155649577	42372853	157	48995											
SLC7A14	57709	broad.mit.edu	37	chr3	170214125	170214125	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacggggatgacctgcggtGtacaaagacttagatctccg	13	10	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170214125	C	C	170214125	1	2	43	0	1	0	0	0	0	0	0	0	14810	1392	48	4		4	SLC7A14	3	170214125	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	14564548	170214125	27808305	158	48996											
ABCF3	55324	broad.mit.edu	37	chr3	183905677	183905677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggcatcagccagccagGcaggcagcagaaaggagagt	15	9	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183905677	T	T	183905677	3	4	43	1	0	0	0	0	1	0	0	0	67	1203	42	3	497	3	ABCF3	3	183905677	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	13691552	183905677	14116753	159	48997											
DGKG	1608	broad.mit.edu	37	chr3	185986570	185986570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgttgaaaagaagcagggcCgccctgggcgccaacccacc	12	15	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185986570	T	T	185986570	1	4	43	0	1	0	0	0	0	0	0	0	4509	667	23	4		4	DGKG	3	185986570	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2080893	185986570	12035860	160	48998											
KIAA0226	9711	broad.mit.edu	37	chr3	197428579	197428579	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttttcctgtccccatacCtgagccattgttgggcacgg	9	13	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197428579	A	A	197428579	4	1	43	1	0	0	0	0	0	1	0	0	8232	695	24	2	2300	2	KIAA0226	3	197428579	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	11442009	197428579	593851	161	48999											
ZNF732	654254	broad.mit.edu	37	chr4	289266	289266	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgtatcttcactttgtAgggctcctttctttgctcca	6	12	4	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	289266	G	G	289266	3	3	43	1	0	0	0	0	1	0	0	0	18252	420	15	5	1578	5	ZNF732	4	289266	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08		289266	190865010	162	49000											
AFAP1	60312	broad.mit.edu	37	chr4	7774451	7774451	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggggccacaagcaagcTacgccccagagccactccac	9	17	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7774451	C	C	7774451	1	2	43	0	1	0	0	0	0	0	0	0	353	1537	53	5		5	AFAP1	4	7774451	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	7485185	7774451	183379825	163	49001											
AFAP1	60312	broad.mit.edu	37	chr4	7774740	7774740	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctgcggcttcctgcctGgaattcccagaaacgccgtt	10	15	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7774740	A	A	7774740	1	1	43	0	1	0	0	0	0	0	0	0	353	1363	47	4		4	AFAP1	4	7774740	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	289	7774740	183379536	164	49002											
SH3TC1	54436	broad.mit.edu	37	chr4	8224565	8224565	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaagcactttattttttccAggttggaaagtgcgattttt	8	5	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8224565	T	T	8224565	5	4	43	1	0	0	0	0	0	0	1	0	14374	202	7	5	1145	5	SH3TC1	4	8224565	Splice_Site	SNP	A	TCGA-17-Z010-01A-01W-0746-08	449825	8224565	182929711	165	49003											
DRD5	1816	broad.mit.edu	37	chr4	9784013	9784013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtctgggtggccttcgaCatcatgtgctccactgcctc	11	14	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9784013	A	A	9784013	3	1	43	1	0	0	0	0	1	0	0	0	4800	477	17	3	362	3	DRD5	4	9784013	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1559448	9784013	181370263	166	49004											
DRD5	1816	broad.mit.edu	37	chr4	9784138	9784138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggccttggtcatggtcgGcctggcatggaccttgtcca	13	12	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9784138	T	T	9784138	3	4	43	1	0	0	0	0	1	0	0	0	4800	1203	42	3	487	3	DRD5	4	9784138	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	125	9784138	181370138	167	49005											
CLNK	116449	broad.mit.edu	37	chr4	10492115	10492115	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaggcaagaggtgtctggtGagagggagtggctgagtgag	21	3	1	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10492115	T	T	10492115	2	4	43	1	0	0	0	0	0	0	0	1	3579	1277	45	3		3	CLNK	4	10492115	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	707977	10492115	180662161	168	49006											
CD38	952	broad.mit.edu	37	chr4	15850126	15850126	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgacagatgtatcctacGgtctcttgatttcctttttt	8	9	1	2	rs113397939	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15850126	A	A	15850126	1	1	43	0	1	0	0	0	0	0	0	0	3039	1131	39	4		4	CD38	4	15850126	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5358011	15850126	175304150	169	49007											
PROM1	8842	broad.mit.edu	37	chr4	16019886	16019886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataggtcacccacgcttaGccctgcccggcaatccccag	10	17	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16019886	T	T	16019886	1	4	43	0	1	0	0	0	0	0	0	0	12661	986	34	3		3	PROM1	4	16019886	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	169760	16019886	175134390	170	49008											
KCNIP4	80333	broad.mit.edu	37	chr4	20884214	20884214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcggaggaaaaaaaaaaaCaaaaaaacaaacttgctttg	6	5	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20884214	A	A	20884214	1	1	43	0	1	0	0	0	0	0	0	0	8112	493	17	3		3	KCNIP4	4	20884214	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4864328	20884214	170270062	171	49009											
YIPF7	285525	broad.mit.edu	37	chr4	44653715	44653715	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccctgagcagatgctaCagtcaaaaataaaaaagcct	7	10	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44653715	A	A	44653715	1	1	43	0	1	0	0	0	0	0	0	0	17610	493	17	3		3	YIPF7	4	44653715	5'Flank	SNP	C	TCGA-17-Z010-01A-01W-0746-08	23769501	44653715	146500561	172	49010											
GUF1	60558	broad.mit.edu	37	chr4	44690190	44690190	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttcacaaattcaaaggttGagggccatgatatttttaaa	8	5	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44690190	A	A	44690190	1	1	43	0	1	0	0	0	0	0	0	0	6964	1305	45	4		4	GUF1	4	44690190	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	36475	44690190	146464086	173	49011											
GABRA4	2557	broad.mit.edu	37	chr4	46930518	46930518	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgaagcctttcgaggcatAtatccagttcggatagaagt	10	8	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46930518	G	G	46930518	2	3	43	1	0	0	0	0	0	0	0	1	6223	456	16	5		5	GABRA4	4	46930518	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08	2240328	46930518	144223758	174	49012											
SLAIN2	57606	broad.mit.edu	37	chr4	48381691	48381691	+	Intron	DEL	T	-	-													ccagagtttgaatttttttcTttttttttttttaaggtaac					rs76866681		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48381691	-	-	48381691	6	5	43	0	1	1	0	1	0	0	0	0	14479	1624	56	0		0	SLAIN2	4	48381691	Intron	DEL	T	TCGA-17-Z010-01A-01W-0746-08	1451173	48381691	142772585	175	49013											
LRRC66	339977	broad.mit.edu	37	chr4	52861508	52861508	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagacagcgtgagacgtGccagctacagaagagacgcc	13	12	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52861508	T	T	52861508	2	4	43	1	0	0	0	0	0	0	0	1	9105	1306	46	3		3	LRRC66	4	52861508	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4479817	52861508	138292768	176	49014											
PDGFRA	5156	broad.mit.edu	37	chr4	55153719	55153719	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttcccttggtatgggcctGacattgctgcttatttgggc	11	9	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55153719	T	T	55153719	1	4	43	0	1	0	0	0	0	0	0	0	11755	1305	45	3		3	PDGFRA	4	55153719	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2292211	55153719	136000557	177	49015											
EPHA5	2044	broad.mit.edu	37	chr4	66213936	66213936	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctccctaaaattgaaaaaGatttaaaaaacttcctacat	2	9	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66213936	C	C	66213936	1	2	43	0	1	0	0	0	0	0	0	0	5212	957	33	4		4	EPHA5	4	66213936	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	11060217	66213936	124940340	178	49016											
EPHA5	2044	broad.mit.edu	37	chr4	66361297	66361297	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagactaagcttttccctgGaacagatgcagtgtttgttt	10	7	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66361297	A	A	66361297	1	1	43	0	1	0	0	0	0	0	0	0	5212	1189	41	4		4	EPHA5	4	66361297	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	147361	66361297	124792979	179	49017											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69095079	69095079	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacgaatgtactctgtaaaaGaaacttcttcagcaagctgc	7	9	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69095079	T	T	69095079	3	4	43	1	0	0	0	0	1	0	0	0	16363	942	33	3	420	3	TMPRSS11B	4	69095079	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2733782	69095079	122059197	180	49018											
UGT2B10	7365	broad.mit.edu	37	chr4	69870917	69870917	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgcctgtacatatcaagtCtatgaaaggcatttaaagtg	8	6	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69870917	G	G	69870917	1	3	43	0	1	0	0	0	0	0	0	0	17082	928	32	4		4	UGT2B10	4	69870917	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	775838	69870917	121283359	181	49019											
UGT2B11	10720	broad.mit.edu	37	chr4	70070415	70070415	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattcataggaataaaatgaGatgcacaatgaaaggttctg	9	4	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70070415	C	C	70070415	1	2	43	0	1	0	0	0	0	0	0	0	17083	957	33	4		4	UGT2B11	4	70070415	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	199498	70070415	121083861	182	49020											
UGT2A1	10941	broad.mit.edu	37	chr4	70505129	70505129	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatcacttcaaaattcacaGgagaatcgggattggagttg	11	6	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70505129	C	C	70505129	1	2	43	0	1	0	0	0	0	0	0	0	17079	1000	35	4		4	UGT2A1	4	70505129	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	434714	70505129	120649147	183	49021											
UGT2A1	10941	broad.mit.edu	37	chr4	70505336	70505336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaaacttcttaggcatgGtaaaatcccttatggaaacc	8	9	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70505336	T	T	70505336	1	4	43	0	1	0	0	0	0	0	0	0	17079	1276	44	3		3	UGT2A1	4	70505336	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	207	70505336	120648940	184	49022											
C4orf35	85438	broad.mit.edu	37	chr4	71201385	71201385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctgtccaggtcactgattCcactattcctgaggctgaaa	10	11	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71201385	A	A	71201385	3	1	43	1	0	0	0	0	1	0	0	0	2288	855	30	3	631	3	C4orf35	4	71201385	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	696049	71201385	119952891	185	49023											
ANKRD17	26057	broad.mit.edu	37	chr4	73944297	73944297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgactattaaagttaaataCtgtttacattatagttaaat	4	3	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73944297	A	A	73944297	1	1	43	0	1	0	0	0	0	0	0	0	646	580	20	3		3	ANKRD17	4	73944297	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2742912	73944297	117209979	186	49024											
PPEF2	5470	broad.mit.edu	37	chr4	76797421	76797421	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagccacatgctaggaagcAgcgcctggccacgctcacct	11	16	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76797421	T	T	76797421	1	4	43	0	1	0	0	0	0	0	0	0	12404	203	7	5		5	PPEF2	4	76797421	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	2853124	76797421	114356855	187	49025											
MRPL1	65008	broad.mit.edu	37	chr4	78792919	78792919	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgatacatcatcaaaggcAtagcctttccaagatggttt	7	9	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78792919	T	T	78792919	3	4	43	1	0	0	0	0	1	0	0	0	9868	217	8	5	59	5	MRPL1	4	78792919	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1995498	78792919	112361357	188	49026											
MRPL1	65008	broad.mit.edu	37	chr4	78830342	78830342	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgctatatctttacatgAgatatgtgtttcttttattc	5	5	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78830342	G	G	78830342	1	3	43	0	1	0	0	0	0	0	0	0	9868	319	11	5		5	MRPL1	4	78830342	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	37423	78830342	112323934	189	49027											
FRAS1	80144	broad.mit.edu	37	chr4	79258885	79258885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtctgactgcatctcctGttaccctcacatctctctta	6	14	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79258885	T	T	79258885	3	4	43	1	0	0	0	0	1	0	0	0	6102	1377	48	3	2414	3	FRAS1	4	79258885	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	428543	79258885	111895391	190	49028											
FRAS1	80144	broad.mit.edu	37	chr4	79301129	79301129	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagaagaaagtgcgttttgTgcacagcaaagaaaaactca	10	7	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79301129	C	C	79301129	3	2	43	1	0	0	0	0	1	0	0	0	6102	1696	59	5	3648	5	FRAS1	4	79301129	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	42244	79301129	111853147	191	49029											
SEC31A	22872	broad.mit.edu	37	chr4	83784523	83784523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagttcaaggtattttccaCgagaatcatcctcaaagttt	7	8	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83784523	A	A	83784523	3	1	43	1	0	0	0	0	1	0	0	0	14111	536	19	3	2269	3	SEC31A	4	83784523	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4483394	83784523	107369753	192	49030											
GRID2	2895	broad.mit.edu	37	chr4	93226002	93226002	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtcttgttggaggtgGcttcagttcattgccccttc	12	9	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93226002	C	C	93226002	1	2	43	0	1	0	0	0	0	0	0	0	6838	1218	42	4		4	GRID2	4	93226002	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	9441479	93226002	97928274	193	49031											
GRID2	2895	broad.mit.edu	37	chr4	94436539	94436539	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatcggagaacaatgttctgGagtcccaggcaggcattcaa	12	9	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94436539	C	C	94436539	3	2	43	1	0	0	0	0	1	0	0	0	6838	1175	41	4	2220	4	GRID2	4	94436539	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1210537	94436539	96717737	194	49032											
BMPR1B	658	broad.mit.edu	37	chr4	95982155	95982155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtgtggttgatgtgagGtttgcctcttcggaagtaaa	14	5	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95982155	T	T	95982155	1	4	43	0	1	0	0	0	0	0	0	0	1476	1276	44	3		3	BMPR1B	4	95982155	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1545616	95982155	95172121	195	49033											
BMPR1B	658	broad.mit.edu	37	chr4	96025651	96025651	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtacagcccccacccccCgtccaaaggtcttgcgttgt	9	16	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96025651	T	T	96025651	3	4	43	1	0	0	0	0	1	0	0	0	1476	652	23	4	78	4	BMPR1B	4	96025651	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	43496	96025651	95128625	196	49034											
AGXT2L1	64850	broad.mit.edu	37	chr4	109668028	109668029	+	Intron	DNP	CT	AA	AA													ctgcgagaggtgaagaaaaaCttgacccacaatctgtccaa							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	109668029	AA	AA	109668028	1	1	43	0	1	0	0	0	0	0	0	0	406	580	20	3		3	AGXT2L1	4	109668028	Intron	DNP	CT	TCGA-17-Z010-01A-01W-0746-08	13642377	109668028	81486248	197	49035											
AGXT2L1	64850	broad.mit.edu	37	chr4	109674112	109674112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatctgcataagcactgGctgagtctgcatggtcttct	9	11	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109674112	T	T	109674112	3	4	43	1	0	0	0	0	1	0	0	0	406	1203	42	3	974	3	AGXT2L1	4	109674112	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6084	109674112	81480164	198	49036											
LARP1B	55132	broad.mit.edu	37	chr4	129077035	129077035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagcgcctggagctggtGctggaagcccactgacccat	14	12	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129077035	T	T	129077035	1	4	43	0	1	0	0	0	0	0	0	0	8701	1334	46	3		3	LARP1B	4	129077035	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	19402923	129077035	62077241	199	49037											
PCDH10	57575	broad.mit.edu	37	chr4	134072874	134072874	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaacggctacttgtacGccctgcgctccttcgactat	9	14	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134072874	C	C	134072874	3	2	43	1	0	0	0	0	1	0	0	0	11601	1087	38	4	1581	4	PCDH10	4	134072874	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4995839	134072874	57081402	200	49038											
CLGN	1047	broad.mit.edu	37	chr4	141315153	141315153	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagaaatggatgatcatcttCgaaataatctggattaggaa	9	4	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141315153	T	T	141315153	3	4	43	1	0	0	0	0	1	0	0	0	3556	893	31	4	660	4	CLGN	4	141315153	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7242279	141315153	49839123	201	49039											
NR3C2	4306	broad.mit.edu	37	chr4	149020209	149020209	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctctgctgtcttcttcccTggccacacctgcaaggtgtt	8	14	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149020209	C	C	149020209	1	2	43	0	1	0	0	0	0	0	0	0	10726	1595	55	5		5	NR3C2	4	149020209	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	7705056	149020209	42134067	202	49040											
DCHS2	54798	broad.mit.edu	37	chr4	155256138	155256138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagagttgtctggaaaatGtgtatggtgacatcggcatt	13	6	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155256138	T	T	155256138	3	4	43	1	0	0	0	0	1	0	0	0	4321	1368	48	3	7820	3	DCHS2	4	155256138	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6235929	155256138	35898138	203	49041											
GRIA2	2891	broad.mit.edu	37	chr4	158283916	158283916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctattcaccagtttgcCttcctaataacctcttctca	2	14	5	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158283916	A	A	158283916	1	1	43	0	1	0	0	0	0	0	0	0	6834	696	24	2		2	GRIA2	4	158283916	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3027778	158283916	32870360	204	49042											
MARCH1	55016	broad.mit.edu	37	chr4	165109835	165109835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggctcatcggccgcacGtggaacgacctgtctatgca	12	12	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165109835	T	T	165109835	1	4	43	0	1	0	0	0	0	0	0	0	9390	1160	40	3		3	MARCH1	4	165109835	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6825919	165109835	26044441	205	49043											
MARCH1	55016	broad.mit.edu	37	chr4	165109847	165109847	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgcacgtggaacgacctGtctatgcagcaggacatcaa	12	12	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165109847	A	A	165109847	1	1	43	0	1	0	0	0	0	0	0	0	9390	1392	48	4		4	MARCH1	4	165109847	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	12	165109847	26044429	206	49044											
TLL1	7092	broad.mit.edu	37	chr4	167020231	167020231	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgggactgagattccaaCccaggtcgtccatgtctggg	12	12	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167020231	T	T	167020231	1	4	43	0	1	0	0	0	0	0	0	0	16068	522	18	4		4	TLL1	4	167020231	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1910384	167020231	24134045	207	49045											
ZDHHC11	79844	broad.mit.edu	37	chr5	822057	822057	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatgaattgacattgaacTtattcttaaaaaaaattcaa	4	4	2	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	822057	A	A	822057	1	1	43	0	1	0	0	0	0	0	0	0	17727	1624	56	5		5	ZDHHC11	5	822057	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08		822057	180093203	208	49046											
CLPTM1L	81037	broad.mit.edu	37	chr5	1334426	1334426	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacgctgcgacaaagaagGtcagcgccaggaagtataag	14	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1334426	A	A	1334426	3	1	43	1	0	0	0	0	1	0	0	0	3587	1261	44	4	791	4	CLPTM1L	5	1334426	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	512369	1334426	179580834	209	49047											
DNAH5	1767	broad.mit.edu	37	chr5	13792290	13792291	+	Missense_Mutation	DNP	CC	AA	AA													ctctcacttcttctgagaaaCccctctgagtacagtagtgg							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	13792291	AA	AA	13792290	3	1	43	1	0	0	0	0	1	0	0	0	4644	507	18	3	5733	3	DNAH5	5	13792290	Missense_Mutation	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	12457864	13792290	167122970	210	49048											
FBXL7	23194	broad.mit.edu	37	chr5	15500923	15500923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcgcccgcggccgtgacGcaccccatttggcaccctgt	10	18	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15500923	A	A	15500923	1	1	43	0	1	0	0	0	0	0	0	0	5781	1102	38	4		4	FBXL7	5	15500923	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1708633	15500923	165414337	211	49049											
CDH12	1010	broad.mit.edu	37	chr5	21884134	21884134	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaattccagcaatgaccActgctacgaatgcaggtgtt	8	10	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21884134	T	T	21884134	1	4	43	0	1	0	0	0	0	0	0	0	3128	174	6	5		5	CDH12	5	21884134	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	6383211	21884134	159031126	212	49050											
ADAMTS12	81792	broad.mit.edu	37	chr5	33595922	33595922	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaactctaaccgcgttcttgTatttatccaaataacaaaac	3	10	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33595922	A	A	33595922	1	1	43	0	1	0	0	0	0	0	0	0	257	1653	57	5		5	ADAMTS12	5	33595922	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	11711788	33595922	147319338	213	49051											
AGXT2	64902	broad.mit.edu	37	chr5	35033369	35033369	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacattttaaaactctgtcAttaattattactcagactcg	3	8	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35033369	G	G	35033369	1	3	43	0	1	0	0	0	0	0	0	0	405	232	8	5		5	AGXT2	5	35033369	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1437447	35033369	145881891	214	49052											
PRLR	5618	broad.mit.edu	37	chr5	35065278	35065278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttgatgttgcagtgaaGttggccagggctttctcagc	13	8	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35065278	T	T	35065278	3	4	43	1	0	0	0	0	1	0	0	0	12637	1020	36	3	90	3	PRLR	5	35065278	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	31909	35065278	145849982	215	49053											
GDNF	2668	broad.mit.edu	37	chr5	37815778	37815778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacatccacaccttttagcgGaatgctttcttagaatatgg	7	9	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37815778	T	T	37815778	3	4	43	1	0	0	0	0	1	0	0	0	6386	1174	41	3	27	3	GDNF	5	37815778	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2750500	37815778	143099482	216	49054											
C7	730	broad.mit.edu	37	chr5	40909774	40909774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcttttcaaatgaacggGggtaatataaatgtaattta	7	4	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40909774	T	T	40909774	1	4	43	0	1	0	0	0	0	0	0	0	2400	1247	43	2		2	C7	5	40909774	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3093996	40909774	140005486	217	49055											
C7	730	broad.mit.edu	37	chr5	40950045	40950045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaatgtaaatcctcagGttggcattttgtcgttaaat	8	5	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40950045	T	T	40950045	3	4	43	1	0	0	0	0	1	0	0	0	2400	1261	44	3	1056	3	C7	5	40950045	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	40271	40950045	139965215	218	49056											
PLCXD3	345557	broad.mit.edu	37	chr5	41313939	41313939	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttcaagctctacaattctCagtcttccctttagtttcta	3	11	5	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41313939	A	A	41313939	1	1	43	0	1	0	0	0	0	0	0	0	12138	841	29	3		3	PLCXD3	5	41313939	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	363894	41313939	139601321	219	49057											
GHR	2690	broad.mit.edu	37	chr5	42689048	42689048	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgagcgagagacttttTcatgccactggacagatgag	11	10	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42689048	C	C	42689048	3	2	43	1	0	0	0	0	1	0	0	0	6435	1783	62	5	203	5	GHR	5	42689048	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1375109	42689048	138226212	220	49058											
HMGCS1	3157	broad.mit.edu	37	chr5	43298588	43298588	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccttagaaaaaaattttGggggacggcggggaataggc	15	5	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43298588	A	A	43298588	1	1	43	0	1	0	0	0	0	0	0	0	7299	1363	47	4		4	HMGCS1	5	43298588	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	609540	43298588	137616672	221	49059											
CDC20B	166979	broad.mit.edu	37	chr5	54439310	54439310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcagcttctctagatgTgggatcttcagtttttttct	8	8	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54439310	A	A	54439310	1	1	43	0	1	0	0	0	0	0	0	0	3090	1711	59	5		5	CDC20B	5	54439310	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	11140722	54439310	126475950	222	49060											
F2RL2	2151	broad.mit.edu	37	chr5	75914382	75914382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaggcagaaaaggggaaCtcttcaaaagaatttggggg	13	6	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75914382	A	A	75914382	3	1	43	1	0	0	0	0	1	0	0	0	5388	564	20	3	978	3	F2RL2	5	75914382	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	21475072	75914382	105000878	223	49061											
ACOT12	134526	broad.mit.edu	37	chr5	80655813	80655813	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagccagattatgttcCacatgatcttgttcagttag	8	9	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80655813	A	A	80655813	2	1	43	1	0	0	0	0	0	0	0	1	150	581	21	2		2	ACOT12	5	80655813	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4741431	80655813	100259447	224	49062											
CEP120	153241	broad.mit.edu	37	chr5	122747999	122747999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgatgaacagtttacacCctgcatatatgtccctataa	6	10	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122747999	A	A	122747999	1	1	43	0	1	0	0	0	0	0	0	0	3276	638	22	2		2	CEP120	5	122747999	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	42092186	122747999	58167261	225	49063											
MEGF10	84466	broad.mit.edu	37	chr5	126705635	126705635	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaatgtgtccatggtcgctGtattgctccaaacacctgtc	8	11	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126705635	C	C	126705635	3	2	43	1	0	0	0	0	1	0	0	0	9553	1377	48	4	367	4	MEGF10	5	126705635	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3957636	126705635	54209625	226	49064											
PCDHA12	56137	broad.mit.edu	37	chr5	140255726	140255726	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggtaaaccagaactaacAgggtctgtccagattcaaat	10	9	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140255726	G	G	140255726	2	3	43	1	0	0	0	0	0	0	0	1	11616	175	7	5		5	PCDHA12	5	140255726	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08	13550091	140255726	40659534	227	49065											
PCDHB10	56126	broad.mit.edu	37	chr5	140572791	140572791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtgggtctccatccagGtctgggacctctactgtacg	13	11	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140572791	T	T	140572791	3	4	43	1	0	0	0	0	1	0	0	0	11629	1252	44	3	668	3	PCDHB10	5	140572791	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	317065	140572791	40342469	228	49066											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719583	140719583	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaatgccccagaattttacAtgacatctgctactagctca	5	12	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140719583	T	T	140719583	3	4	43	1	0	0	0	0	1	0	0	0	11648	217	8	5	1047	5	PCDHGA2	5	140719583	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	146792	140719583	40195677	229	49067											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740333	140740333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacagtttacatcaattgGtcctcacagctgtggatggc	10	10	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140740333	T	T	140740333	3	4	43	1	0	0	0	0	1	0	0	0	11657	1261	44	3	633	3	PCDHGB2	5	140740333	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	20750	140740333	40174927	230	49068											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744814	140744814	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaatctcaactctacaatCactggactatgaagaatcca	6	10	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140744814	T	T	140744814	3	4	43	1	0	0	0	0	1	0	0	0	11651	838	29	4	919	4	PCDHGA5	5	140744814	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4481	140744814	40170446	231	49069											
PCDHGA10	56106	broad.mit.edu	37	chr5	140792989	140792990	+	Frame_Shift_Ins	INS	-	T	T													gcagcttttctctctgaaccINScgcgcagcggcagcttgatc							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140792990	T	T	140792989	7	5	43	1	0	1	1	0	0	0	0	0	11645	623	22	0	249	0	PCDHGA10	5	140792989	Frame_Shift_Ins	INS	-	TCGA-17-Z010-01A-01W-0746-08	48175	140792989	40122271	232	49070											
LARS	51520	broad.mit.edu	37	chr5	145506030	145506031	+	Missense_Mutation	DNP	TC	GT	GT													aacaaatggcatgactttctTcatgtatttcttcagttctg							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	145506031	GT	GT	145506030	3	3	43	1	0	0	0	0	1	0	0	0	8706	1792	62	5	591	5	LARS	5	145506030	Missense_Mutation	DNP	TC	TCGA-17-Z010-01A-01W-0746-08	4713041	145506030	35409230	233	49071											
FAT2	2196	broad.mit.edu	37	chr5	150920038	150920038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgcccctcaatctccCttctcctgctcctcactctc	2	22	6	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150920038	A	A	150920038	1	1	43	0	1	0	0	0	0	0	0	0	5747	696	24	2		2	FAT2	5	150920038	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5414008	150920038	29995222	234	49072											
ITK	3702	broad.mit.edu	37	chr5	156673104	156673104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccctacccacactgaaccCtgtatcatatcatgagggtg	7	13	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156673104	A	A	156673104	1	1	43	0	1	0	0	0	0	0	0	0	7979	696	24	2		2	ITK	5	156673104	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5753066	156673104	24242156	235	49073											
ADRA1B	147	broad.mit.edu	37	chr5	159378207	159378207	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttctccatggtgaaagacGctggtggacttcacaacata	9	11	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159378207	C	C	159378207	1	2	43	0	1	0	0	0	0	0	0	0	335	1102	38	4		4	ADRA1B	5	159378207	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2705103	159378207	21537053	236	49074											
FABP6	2172	broad.mit.edu	37	chr5	159626017	159626017	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacaatgagatggtctccaGagcccctcccagcgtgctgg	12	13	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159626017	T	T	159626017	1	4	43	0	1	0	0	0	0	0	0	0	5407	957	33	3		3	FABP6	5	159626017	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	247810	159626017	21289243	237	49075											
FABP6	2172	broad.mit.edu	37	chr5	159640740	159640740	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agattatttctcttctgactCaggttctgagagctgtgttg	10	7	4	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159640740	T	T	159640740	1	4	43	0	1	0	0	0	0	0	0	0	5407	841	29	4		4	FABP6	5	159640740	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	14723	159640740	21274520	238	49076											
ATP10B	23120	broad.mit.edu	37	chr5	160097378	160097378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcatctactactttcccCtctacccagtaggtttagtt	7	12	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160097378	A	A	160097378	1	1	43	0	1	0	0	0	0	0	0	0	1121	696	24	2		2	ATP10B	5	160097378	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	456638	160097378	20817882	239	49077											
HMMR	3161	broad.mit.edu	37	chr5	162917412	162917412	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaggaagtatcaaaactccGctgtcagcttgctaaaaaaa	7	9	2	0	rs141056157	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162917412	C	C	162917412	3	2	43	1	0	0	0	0	1	0	0	0	7309	1087	38	4	2045	4	HMMR	5	162917412	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2820034	162917412	17997848	240	49078											
ODZ2	57451	broad.mit.edu	37	chr5	166854833	166854833	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaaaggaagggaaggaaggGacgggagggaaggaagggaa	23	1	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166854833	C	C	166854833	1	2	43	0	1	0	0	0	0	0	0	0	10930	1189	41	4		4	ODZ2	5	166854833	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3937421	166854833	14060427	241	49079											
SLIT3	6586	broad.mit.edu	37	chr5	168620577	168620577	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagaggaaagagaatggaaGgatgtcaaggggacattaaa	14	2	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168620577	C	C	168620577	1	2	43	0	1	0	0	0	0	0	0	0	14855	1015	35	4		4	SLIT3	5	168620577	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1765744	168620577	12294683	242	49080											
DOCK2	1794	broad.mit.edu	37	chr5	169101394	169101394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcaggaaccttacccaagGatgagctgaaggaactgaag	11	9	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169101394	T	T	169101394	3	4	43	1	0	0	0	0	1	0	0	0	4727	1174	41	3	437	3	DOCK2	5	169101394	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	480817	169101394	11813866	243	49081											
DOCK2	1794	broad.mit.edu	37	chr5	169188431	169188431	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggacttgggggtttcccaGagctagaggtccagggatgg	17	8	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169188431	C	C	169188431	1	2	43	0	1	0	0	0	0	0	0	0	4727	957	33	4		4	DOCK2	5	169188431	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	87037	169188431	11726829	244	49082											
DOCK2	1794	broad.mit.edu	37	chr5	169494742	169494742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcggtgagcagagcagtgGtgggaggacccagggggcag	21	8	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169494742	T	T	169494742	1	4	43	0	1	0	0	0	0	0	0	0	4727	1276	44	3		3	DOCK2	5	169494742	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	306311	169494742	11420518	245	49083											
KCNIP1	30820	broad.mit.edu	37	chr5	169984083	169984083	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcacagactctgaagctaaGccttctcccatgctccagtc	7	15	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169984083	C	C	169984083	1	2	43	0	1	0	0	0	0	0	0	0	8109	986	34	4		4	KCNIP1	5	169984083	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	489341	169984083	10931177	246	49084											
KCNIP1	30820	broad.mit.edu	37	chr5	169994645	169994645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccagggggaagggccattGgtgaggagcctttctgatca	16	9	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169994645	T	T	169994645	1	4	43	0	1	0	0	0	0	0	0	0	8109	1363	47	2		2	KCNIP1	5	169994645	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	10562	169994645	10920615	247	49085											
BTNL8	79908	broad.mit.edu	37	chr5	180376336	180376336	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagggggaactgaacagggAcagatacgggaacacagagt	16	6	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180376336	T	T	180376336	1	4	43	0	1	0	0	0	0	0	0	0	1577	290	10	5		5	BTNL8	5	180376336	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	10381691	180376336	538924	248	49086											
BTNL3	10917	broad.mit.edu	37	chr5	180432597	180432597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactttgtctcccaacaatGggtattgggtcctcagactg	10	10	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180432597	T	T	180432597	3	4	43	1	0	0	0	0	1	0	0	0	1576	1348	47	2	1156	2	BTNL3	5	180432597	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	56261	180432597	482663	249	49087											
GMDS	2762	broad.mit.edu	37	chr6	1734040	1734040	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggttgcggtgagccgagatCgtgctactgcactccagcca	13	12	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1734040	A	A	1734040	1	1	43	0	1	0	0	0	0	0	0	0	6550	899	31	3		3	GMDS	6	1734040	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08		1734040	169381027	250	49088											
F13A1	2162	broad.mit.edu	37	chr6	6219260	6219260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggaccattgggacctgagTgttgaagaagaaatagatgg	15	4	0	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6219260	A	A	6219260	1	1	43	0	1	0	0	0	0	0	0	0	5383	1711	59	5		5	F13A1	6	6219260	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	4485220	6219260	164895807	251	49089											
GCM2	9247	broad.mit.edu	37	chr6	10876278	10876278	+	Intron	DEL	T	-	-													acgagaaaatgaatcatacaTttgtgcctctaaaggaagct							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10876278	-	-	10876278	6	5	43	0	1	1	0	1	0	0	0	0	6360	1508	52	0		0	GCM2	6	10876278	Intron	DEL	T	TCGA-17-Z010-01A-01W-0746-08	4657018	10876278	160238789	252	49090											
GFOD1	54438	broad.mit.edu	37	chr6	13434727	13434727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctttatgggaacacagaaAtcaagtgcagggcattatgg	13	6	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13434727	G	G	13434727	1	3	43	0	1	0	0	0	0	0	0	0	6407	116	4	5		5	GFOD1	6	13434727	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	2558449	13434727	157680340	253	49091											
DEK	7913	broad.mit.edu	37	chr6	18250029	18250029	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaactgttccgttccttTttactgcctttgctacaagt	6	12	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18250029	C	C	18250029	2	2	43	1	0	0	0	0	0	0	0	1	4464	1838	64	5		5	DEK	6	18250029	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	4815302	18250029	152865038	254	49092											
DCDC2	51473	broad.mit.edu	37	chr6	24178818	24178818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttctgcatccttgtttgCcttctctccatcttcttcct	4	15	4	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24178818	A	A	24178818	3	1	43	1	0	0	0	0	1	0	0	0	4318	739	26	3	372	3	DCDC2	6	24178818	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5928789	24178818	146936249	255	49093											
SLC17A3	10786	broad.mit.edu	37	chr6	25850352	25850352	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatctgccagatagcctccCaccatgcctatgacccaggc	7	16	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25850352	A	A	25850352	2	1	43	1	0	0	0	0	0	0	0	1	14531	581	21	2		2	SLC17A3	6	25850352	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1671534	25850352	145264715	256	49094											
SLC17A3	10786	broad.mit.edu	37	chr6	25850897	25850897	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatccgacagatgctcacAcacttagtcacccttaaaaa	4	12	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25850897	T	T	25850897	1	4	43	0	1	0	0	0	0	0	0	0	14531	174	6	5		5	SLC17A3	6	25850897	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	545	25850897	145264170	257	49095											
HIST1H1C	3006	broad.mit.edu	37	chr6	26056117	26056117	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggcagctttcttgggcttCgcaaccttggccttctttgg	11	11	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26056117	T	T	26056117	2	4	43	1	0	0	0	0	0	0	0	1	7191	871	31	4		4	HIST1H1C	6	26056117	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	205220	26056117	145058950	258	49096											
OR2B6	26212	broad.mit.edu	37	chr6	27925140	27925140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacactgtgaccatctttgGcaatctgaccattattctag	6	10	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27925140	T	T	27925140	3	4	43	1	0	0	0	0	1	0	0	0	11085	1203	42	3	124	3	OR2B6	6	27925140	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1869023	27925140	143189927	259	49097											
TRIM26	7726	broad.mit.edu	37	chr6	30164656	30164656	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaggatctggagtgggaGgagctacagagggttcctgg	17	7	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30164656	A	A	30164656	1	1	43	0	1	0	0	0	0	0	0	0	16624	1015	35	4		4	TRIM26	6	30164656	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2239516	30164656	140950411	260	49098											
HSPA1L	3305	broad.mit.edu	37	chr6	31778780	31778780	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttatccatcttggcatcccGaagcgctttttctacaggct	7	13	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31778780	A	A	31778780	3	1	43	1	0	0	0	0	1	0	0	0	7479	1057	37	4	959	4	HSPA1L	6	31778780	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1614124	31778780	139336287	261	49099											
C6orf48	50854	broad.mit.edu	37	chr6	31804876	31804876	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgatgatttcacagactaGagtctccgatgctggtcatg	10	8	3	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31804876	A	A	31804876	1	1	43	0	1	0	0	0	0	0	0	0	2388	957	33	4		4	C6orf48	6	31804876	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	26096	31804876	139310191	262	49100											
PNPLA1	285848	broad.mit.edu	37	chr6	36262160	36262161	+	Frame_Shift_Ins	INS	-	C	C													aggatgacccacgcattgttINSccccccggacctggtggtga							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36262161	C	C	36262160	7	5	43	1	0	1	1	0	0	0	0	0	12259	1783	62	0	739	0	PNPLA1	6	36262160	Frame_Shift_Ins	INS	-	TCGA-17-Z010-01A-01W-0746-08	4457284	36262160	134852907	263	49101											
FGD2	221472	broad.mit.edu	37	chr6	36981397	36981398	+	Missense_Mutation	DNP	CC	AA	AA													tcctgcaggacagctaacccCcgcatcggtgacgtgatcca					rs151050710		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36981398	AA	AA	36981397	3	1	43	1	0	0	0	0	1	0	0	0	5890	610	22	2	558	2	FGD2	6	36981397	Missense_Mutation	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	719237	36981397	134133670	264	49102											
KIF6	221458	broad.mit.edu	37	chr6	39413574	39413574	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggaaatagaatggcaaatCcacagggatggggaggatcc	14	7	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39413574	T	T	39413574	1	4	43	0	1	0	0	0	0	0	0	0	8378	870	30	4		4	KIF6	6	39413574	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2432177	39413574	131701493	265	49103											
LRFN2	57497	broad.mit.edu	37	chr6	40359793	40359793	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgacagagaggctgcgcttCgtccagatgttcgagacctt	12	10	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40359793	T	T	40359793	2	4	43	1	0	0	0	0	0	0	0	1	9025	871	31	4		4	LRFN2	6	40359793	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	946219	40359793	130755274	266	49104											
APOBEC2	10930	broad.mit.edu	37	chr6	41029415	41029415	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcatgtgggaggagccGgagatccaggctgctctgaa	14	10	3	2	rs140342245	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41029415	A	A	41029415	2	1	43	1	0	0	0	0	0	0	0	1	790	1103	39	4		4	APOBEC2	6	41029415	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	669622	41029415	130085652	267	49105											
TFEB	7942	broad.mit.edu	37	chr6	41652374	41652375	+	Frame_Shift_Ins	INS	-	G	G													ctccatgctgaagctgctccINSggcggctgctggccttggag							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41652375	G	G	41652374	7	5	43	1	0	1	1	0	0	0	0	0	15924	652	23	0	40	0	TFEB	6	41652374	Frame_Shift_Ins	INS	-	TCGA-17-Z010-01A-01W-0746-08	622959	41652374	129462693	268	49106											
TRERF1	55809	broad.mit.edu	37	chr6	42235934	42235934	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagctgctgatgctgaggCcccatgttgttgaggtggat	15	8	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42235934	A	A	42235934	2	1	43	1	0	0	0	0	0	0	0	1	16599	726	26	3		3	TRERF1	6	42235934	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	583560	42235934	128879133	269	49107											
TRERF1	55809	broad.mit.edu	37	chr6	42236657	42236657	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccttgggtagggtgctgCccgacctgaagagctggttt	15	10	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42236657	A	A	42236657	2	1	43	1	0	0	0	0	0	0	0	1	16599	726	26	3		3	TRERF1	6	42236657	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	723	42236657	128878410	270	49108											
SLC29A1	2030	broad.mit.edu	37	chr6	44199863	44199863	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgaggatgccacaggtttCcaggatgggaacagacagga	16	7	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44199863	T	T	44199863	1	4	43	0	1	0	0	0	0	0	0	0	14648	870	30	4		4	SLC29A1	6	44199863	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1963206	44199863	126915204	271	49109											
OPN5	221391	broad.mit.edu	37	chr6	47762885	47762885	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatggaataaatctttggaGgtggaatttgacatatcgag	11	4	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47762885	A	A	47762885	1	1	43	0	1	0	0	0	0	0	0	0	10977	1015	35	4		4	OPN5	6	47762885	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3563022	47762885	123352182	272	49110											
PRIM2	5558	broad.mit.edu	37	chr6	57264865	57264865	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttatccagcttgccaccTgtgcctttgaagtgggacat	9	10	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57264865	A	A	57264865	1	1	43	0	1	0	0	0	0	0	0	0	12597	1595	55	5		5	PRIM2	6	57264865	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	9501980	57264865	113850202	273	49111											
PRIM2	5558	broad.mit.edu	37	chr6	57339799	57339801	+	Intron	DEL	CGA	-	-													aatcggctgctctgggcatcCgattttatttgcatgcagtg					rs11306040		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57339801	-	-	57339799	6	5	43	0	1	1	0	1	0	0	0	0	12597	667	23	0		0	PRIM2	6	57339799	Intron	DEL	CGA	TCGA-17-Z010-01A-01W-0746-08	74934	57339799	113775268	274	49112											
PRIM2	5558	broad.mit.edu	37	chr6	57504961	57504961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattcttaaagaaaagaatTttcaacccagaatttcatgt	4	7	3	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57504961	A	A	57504961	1	1	43	0	1	0	0	0	0	0	0	0	12597	1856	64	5		5	PRIM2	6	57504961	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	165162	57504961	113610106	275	49113											
GRIK2	2898	broad.mit.edu	37	chr6	102134215	102134215	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccgattcaggtttgctggAtggatttatgacggtatgaa	12	6	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102134215	T	T	102134215	3	4	43	1	0	0	0	0	1	0	0	0	6840	333	12	5	960	5	GRIK2	6	102134215	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	44629254	102134215	68980852	276	49114											
AIM1	202	broad.mit.edu	37	chr6	106975409	106975409	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatggattcttactttaaggGaaatgatcattttacgaaat	7	4	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106975409	A	A	106975409	1	1	43	0	1	0	0	0	0	0	0	0	430	1189	41	4		4	AIM1	6	106975409	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4841194	106975409	64139658	277	49115											
SMPD2	6610	broad.mit.edu	37	chr6	109763928	109763928	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagctggtgatggaagaactCccgcctcaccaacctggttc	11	13	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109763928	T	T	109763928	1	4	43	0	1	0	0	0	0	0	0	0	14919	870	30	4		4	SMPD2	6	109763928	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2788519	109763928	61351139	278	49116											
RFX6	222546	broad.mit.edu	37	chr6	117250118	117250118	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatcatctccagttgcatgTcgaactccagtcctaggtaa	7	12	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117250118	A	A	117250118	4	1	43	1	0	0	0	0	0	1	0	0	13375	1673	58	5	2665	5	RFX6	6	117250118	Nonsense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	7486190	117250118	53864949	279	49117											
HDDC2	51020	broad.mit.edu	37	chr6	125614247	125614247	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataccttaaataaataagtgTaatcattcatatgggcttcg	6	6	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125614247	C	C	125614247	1	2	43	0	1	0	0	0	0	0	0	0	7083	1653	57	5		5	HDDC2	6	125614247	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	8364129	125614247	45500820	280	49118											
KIAA1244	57221	broad.mit.edu	37	chr6	138607844	138607844	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccatgttccaggcgtggCatttgctcgctatattctgg	10	12	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138607844	T	T	138607844	3	4	43	1	0	0	0	0	1	0	0	0	8287	710	25	4	2638	4	KIAA1244	6	138607844	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	12993597	138607844	32507223	281	49119											
UTRN	7402	broad.mit.edu	37	chr6	145095347	145095347	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatattttttcatcatccaaAgtaaccaaatacattctggg	4	8	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145095347	T	T	145095347	1	4	43	0	1	0	0	0	0	0	0	0	17230	87	3	5		5	UTRN	6	145095347	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	6487503	145095347	26019720	282	49120											
GRM1	2911	broad.mit.edu	37	chr6	146755823	146755823	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgactcggtggcctcgggcaGctcggtgcccagctcccccg	14	18	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146755823	C	C	146755823	3	2	43	1	0	0	0	0	1	0	0	0	6862	971	34	4	3571	4	GRM1	6	146755823	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1660476	146755823	24359244	283	49121											
SYNE1	23345	broad.mit.edu	37	chr6	152861100	152861101	+	Missense_Mutation	DNP	CC	AA	AA													ggtagtttcctttaccttggCcagatgagagttgatccatt							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152861101	AA	AA	152861100	3	1	43	1	0	0	0	0	1	0	0	0	15564	739	26	3	26939	3	SYNE1	6	152861100	Missense_Mutation	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	6105277	152861100	18253967	284	49122											
NOX3	50508	broad.mit.edu	37	chr6	155774357	155774357	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcttggtaggggaaaaCgtataggtaagtataaattg	14	2	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155774357	T	T	155774357	1	4	43	0	1	0	0	0	0	0	0	0	10652	551	19	4		4	NOX3	6	155774357	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2913257	155774357	15340710	285	49123											
PLG	5340	broad.mit.edu	37	chr6	161160062	161160062	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggttacctgaaggggctGgaccatattttcctcttgac	11	9	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161160062	C	C	161160062	1	2	43	0	1	0	0	0	0	0	0	0	12181	1363	47	4		4	PLG	6	161160062	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5385705	161160062	9955005	286	49124											
THBS2	7058	broad.mit.edu	37	chr6	169629823	169629823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacatttaggaaagcgcCtctttcaggaatgcaggtga	10	7	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169629823	A	A	169629823	1	1	43	0	1	0	0	0	0	0	0	0	15977	696	24	2		2	THBS2	6	169629823	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8469761	169629823	1485244	287	49125											
EIF2AK1	27102	broad.mit.edu	37	chr7	6064471	6064471	+	Intron	DEL	T	-	-													ttaaactccattaaaataacTttttttttttttttttgaga							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6064471	-	-	6064471	6	5	43	0	1	1	0	1	0	0	0	0	5036	1624	56	0		0	EIF2AK1	7	6064471	Intron	DEL	T	TCGA-17-Z010-01A-01W-0746-08		6064471	153074192	288	49126											
PHF14	9678	broad.mit.edu	37	chr7	11076020	11076020	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcattttattatcttttaAaatttgaatacatttctttt	1	4	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11076020	T	T	11076020	1	4	43	0	1	0	0	0	0	0	0	0	11920	29	1	5		5	PHF14	7	11076020	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	5011549	11076020	148062643	289	49127											
DGKB	1607	broad.mit.edu	37	chr7	14733850	14733850	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagataagggaaaattggtGgtcaaccaataaaataaatt	10	3	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14733850	A	A	14733850	1	1	43	0	1	0	0	0	0	0	0	0	4506	1363	47	4		4	DGKB	7	14733850	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3657830	14733850	144404813	290	49128											
MEOX2	4223	broad.mit.edu	37	chr7	15725982	15725983	+	Missense_Mutation	DNP	CC	TT	TT													gaacgggtgcaagccttgcgCcgtggcgtgagggctgcgca							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15725983	TT	TT	15725982	3	4	43	1	0	0	0	0	1	0	0	0	9567	739	26	4	880	4	MEOX2	7	15725982	Missense_Mutation	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	992132	15725982	143412681	291	49129											
DNAH11	8701	broad.mit.edu	37	chr7	21818511	21818511	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgaattcattcccagcaaTaagctctatctgggatttgt	7	10	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21818511	C	C	21818511	1	2	43	0	1	0	0	0	0	0	0	0	4639	1421	49	5		5	DNAH11	7	21818511	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	6092529	21818511	137320152	292	49130											
TOMM7	54543	broad.mit.edu	37	chr7	22852767	22852767	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccgctgattgcctccaaAtccagaagaccaaataatcc	6	13	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22852767	C	C	22852767	1	2	43	0	1	0	0	0	0	0	0	0	16485	116	4	5		5	TOMM7	7	22852767	3'UTR	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1034256	22852767	136285896	293	49131											
HOXA3	3200	broad.mit.edu	37	chr7	27147963	27147963	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcccgtaggtaccctgGgggggcttggagaagggcgg	21	9	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27147963	T	T	27147963	2	4	43	1	0	0	0	0	0	0	0	1	7360	1219	43	2		2	HOXA3	7	27147963	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4295196	27147963	131990700	294	49132											
AVL9	23080	broad.mit.edu	37	chr7	32718663	32718663	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggggtattcagtcagtTtatcattcataatcatccat	7	8	5	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32718663	C	C	32718663	1	2	43	0	1	0	0	0	0	0	0	0	1233	1856	64	5		5	AVL9	7	32718663	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	5570700	32718663	126420000	295	49133											
BMPER	168667	broad.mit.edu	37	chr7	34193562	34193562	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgatttcttgccatccttgCgtagtcctcaagtcttctaa	7	11	4	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34193562	G	G	34193562	1	3	43	0	1	0	0	0	0	0	0	0	1474	783	27	4		4	BMPER	7	34193562	3'UTR	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1474899	34193562	124945101	296	49134											
NPSR1	387129	broad.mit.edu	37	chr7	34701233	34701233	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctgcttccacccctcTaacctactctaccttcctaa	3	18	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34701233	C	C	34701233	1	2	43	0	1	0	0	0	0	0	0	0	10695	1537	53	5		5	NPSR1	7	34701233	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	507671	34701233	124437430	297	49135											
TBX20	57057	broad.mit.edu	37	chr7	35242075	35242075	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcacagcagaggaatgGcgtagtccttgaatggcagc	13	9	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35242075	A	A	35242075	2	1	43	1	0	0	0	0	0	0	0	1	15778	1190	42	4		4	TBX20	7	35242075	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	540842	35242075	123896588	298	49136											
TBX20	57057	broad.mit.edu	37	chr7	35281693	35281694	+	Intron	DEL	CT	-	-													gcctggcaggagcaatggcaCtctctgctggttgctgctgc					rs10531322		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35281694	-	-	35281693	6	5	43	0	1	1	0	1	0	0	0	0	15778	580	20	0		0	TBX20	7	35281693	Intron	DEL	CT	TCGA-17-Z010-01A-01W-0746-08	39618	35281693	123856970	299	49137											
AMPH	273	broad.mit.edu	37	chr7	38530670	38530670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttatgtcaggaaattgccCcaggtaggtatccagtgtta	10	8	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38530670	A	A	38530670	3	1	43	1	0	0	0	0	1	0	0	0	588	623	22	2	1779	2	AMPH	7	38530670	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3248977	38530670	120607993	300	49138											
GLI3	2737	broad.mit.edu	37	chr7	42005031	42005031	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgttctccccgagggtctGatagcccccagcaggcccgc	12	17	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42005031	A	A	42005031	4	1	43	1	0	0	0	0	0	1	0	0	6503	1299	45	4	1106	4	GLI3	7	42005031	Nonsense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3474361	42005031	117133632	301	49139											
HECW1	23072	broad.mit.edu	37	chr7	43506055	43506055	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttttttcagatctaaggaGagaagggtcactttctccag	9	8	4	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43506055	T	T	43506055	3	4	43	1	0	0	0	0	1	0	0	0	7109	942	33	3	2851	3	HECW1	7	43506055	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1501024	43506055	115632608	302	49140											
NPC1L1	29881	broad.mit.edu	37	chr7	44556278	44556278	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacccctccagaggcccccTggtgcctgtgtctgctgggt	12	17	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44556278	A	A	44556278	1	1	43	0	1	0	0	0	0	0	0	0	10666	1595	55	5		5	NPC1L1	7	44556278	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1050223	44556278	114582385	303	49141											
EGFR	1956	broad.mit.edu	37	chr7	55223445	55223445	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctttccatcacccctcaaGaggacctggaccgcctgtgt	9	16	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55223445	C	C	55223445	1	2	43	0	1	0	0	0	0	0	0	0	5007	957	33	4		4	EGFR	7	55223445	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	10667167	55223445	103915218	304	49142											
ZNF679	168417	broad.mit.edu	37	chr7	63726831	63726831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacacatgtgaagaatgtGgccaagcctttagccgctcc	9	13	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63726831	T	T	63726831	3	4	43	1	0	0	0	0	1	0	0	0	18213	1348	47	2	834	2	ZNF679	7	63726831	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	8503386	63726831	95411832	305	49143											
CLIP2	7461	broad.mit.edu	37	chr7	73803343	73803343	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttcatcccctgggagaatCagcgccctgcccaggtcttt	9	16	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73803343	A	A	73803343	1	1	43	0	1	0	0	0	0	0	0	0	3565	841	29	3		3	CLIP2	7	73803343	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	10076512	73803343	85335320	306	49144											
MDH2	4191	broad.mit.edu	37	chr7	75686684	75686684	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaactttccaggcctctctGaatcagaaacggtgacattt	8	10	2	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75686684	A	A	75686684	1	1	43	0	1	0	0	0	0	0	0	0	9503	1305	45	4		4	MDH2	7	75686684	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1883341	75686684	83451979	307	49145											
HGF	3082	broad.mit.edu	37	chr7	81346652	81346652	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtaattctcattcagcTtacttgcatctggttcccag	8	11	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81346652	G	G	81346652	3	3	43	1	0	0	0	0	1	0	0	0	7152	1609	56	5	917	5	HGF	7	81346652	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	5659968	81346652	77792011	308	49146											
PCLO	27445	broad.mit.edu	37	chr7	82784790	82784790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaggctgagctaaagcCtttggcccaggctgctccga	13	13	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82784790	A	A	82784790	3	1	43	1	0	0	0	0	1	0	0	0	11677	680	24	2	14374	2	PCLO	7	82784790	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1438138	82784790	76353873	309	49147											
ABCB4	5244	broad.mit.edu	37	chr7	87104552	87104552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaacacgtttgctccaaGgtcagaaccggatgcaagac	9	12	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87104552	T	T	87104552	1	4	43	0	1	0	0	0	0	0	0	0	43	1015	35	2		2	ABCB4	7	87104552	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4319762	87104552	72034111	310	49148											
ABCB1	5243	broad.mit.edu	37	chr7	87215073	87215073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttttccttcaaaataTatccaaaatccaaacatttt	1	9	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87215073	C	C	87215073	1	2	43	0	1	0	0	0	0	0	0	0	40	1421	49	5		5	ABCB1	7	87215073	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	110521	87215073	71923590	311	49149											
STAG3	10734	broad.mit.edu	37	chr7	99797814	99797814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacacaccccctgcaccaGtgtttctttacacctccccc	4	20	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99797814	T	T	99797814	1	4	43	0	1	0	0	0	0	0	0	0	15362	1044	36	3		3	STAG3	7	99797814	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	12582741	99797814	59340849	312	49150											
ACHE	43	broad.mit.edu	37	chr7	100490831	100490831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgagggcctctggggtGtcactgaggaagtctccatc	14	9	3	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100490831	T	T	100490831	3	4	43	1	0	0	0	0	1	0	0	0	141	1368	48	3	972	3	ACHE	7	100490831	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	693017	100490831	58647832	313	49151											
MUC17	140453	broad.mit.edu	37	chr7	100701466	100701466	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccctgtacttaccaaggaGaaagaggagagacagcagtg	13	8	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100701466	T	T	100701466	1	4	43	0	1	0	0	0	0	0	0	0	10068	957	33	3		3	MUC17	7	100701466	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	210635	100701466	58437197	314	49152											
SERPINE1	5054	broad.mit.edu	37	chr7	100780228	100780228	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaacggcgggggtggggGtggtgccagtgccagcatcc	19	9	0	0	rs34472055		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100780228	A	A	100780228	1	1	43	0	1	0	0	0	0	0	0	0	14224	1276	44	4		4	SERPINE1	7	100780228	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	78762	100780228	58358435	315	49153											
SPDYE2	441273	broad.mit.edu	37	chr7	102196081	102196081	+	Intron	DEL	A	-	-													acaacaacaacaacaacaacAaaaaaaaaaaaaaaaaggga							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102196081	-	-	102196081	6	5	43	0	1	1	0	1	0	0	0	0	15146	145	5	0		0	SPDYE2	7	102196081	Intron	DEL	A	TCGA-17-Z010-01A-01W-0746-08	1415853	102196081	56942582	316	49154											
FOXP2	93986	broad.mit.edu	37	chr7	113937204	113937204	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgactttcctcatggcgcccAgaacgtttctcagctcctcc	7	17	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113937204	T	T	113937204	1	4	43	0	1	0	0	0	0	0	0	0	6087	203	7	5		5	FOXP2	7	113937204	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	11741123	113937204	45201459	317	49155											
MET	4233	broad.mit.edu	37	chr7	116435746	116435746	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctctgggagctgatgacaaGaggagccccaccttatcctg	11	13	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116435746	T	T	116435746	3	4	43	1	0	0	0	0	1	0	0	0	9578	942	33	3	3964	3	MET	7	116435746	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2498542	116435746	42702917	318	49156											
CTTNBP2	83992	broad.mit.edu	37	chr7	117386172	117386172	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctattaacaaaccaagtaGagagctagggtgaagatgct	10	7	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117386172	C	C	117386172	1	2	43	0	1	0	0	0	0	0	0	0	4079	957	33	4		4	CTTNBP2	7	117386172	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	950426	117386172	41752491	319	49157											
OPN1SW	611	broad.mit.edu	37	chr7	128414503	128414503	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcagagcactcttccttctCatgtggagccccgaacccct	7	16	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128414503	T	T	128414503	1	4	43	0	1	0	0	0	0	0	0	0	10974	841	29	4		4	OPN1SW	7	128414503	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	11028331	128414503	30724160	320	49158											
OPN1SW	611	broad.mit.edu	37	chr7	128415641	128415641	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccagaatgtagttgagGggctgccgcaactttttgta	12	7	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128415641	T	T	128415641	2	4	43	1	0	0	0	0	0	0	0	1	10974	1219	43	2		2	OPN1SW	7	128415641	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1138	128415641	30723022	321	49159											
AHCYL2	23382	broad.mit.edu	37	chr7	129008294	129008294	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagtatttccaaaccagcTttcccttttgcttcaggaca	5	14	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129008294	G	G	129008294	1	3	43	0	1	0	0	0	0	0	0	0	411	1624	56	5		5	AHCYL2	7	129008294	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	592653	129008294	30130369	322	49160											
CPA5	93979	broad.mit.edu	37	chr7	130000900	130000900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattgaagagagtgggaagGgacagggagaacattcagag	17	4	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130000900	T	T	130000900	1	4	43	0	1	0	0	0	0	0	0	0	3825	1247	43	2		2	CPA5	7	130000900	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	992606	130000900	29137763	323	49161											
SLC13A4	26266	broad.mit.edu	37	chr7	135366289	135366289	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactggcagctcctgtggttGggccagtttgtacacttggc	13	10	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135366289	T	T	135366289	1	4	43	0	1	0	0	0	0	0	0	0	14507	1363	47	2		2	SLC13A4	7	135366289	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5365389	135366289	23772374	324	49162											
DGKI	9162	broad.mit.edu	37	chr7	137341260	137341260	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacgacgattttacagacTgcacacttcctcctgagagc	9	12	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137341260	G	G	137341260	2	3	43	1	0	0	0	0	0	0	0	1	4511	1567	55	5		5	DGKI	7	137341260	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1974971	137341260	21797403	325	49163											
JHDM1D	80853	broad.mit.edu	37	chr7	139833408	139833408	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcactggtttggaaccaTcatcaatttctgtgtagtca	8	9	4	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139833408	A	A	139833408	3	1	43	1	0	0	0	0	1	0	0	0	8018	1435	50	5	2568	5	JHDM1D	7	139833408	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	2492148	139833408	19305255	326	49164											
EPHB6	2051	broad.mit.edu	37	chr7	142567864	142567864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgagttccttctccactcCaacctcatgctccaccagat	4	16	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142567864	A	A	142567864	1	1	43	0	1	0	0	0	0	0	0	0	5220	609	21	2		2	EPHB6	7	142567864	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2734456	142567864	16570799	327	49165											
KEL	3792	broad.mit.edu	37	chr7	142649470	142649470	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcctgcttctatggaaagCcaagacatggaggggcatct	12	9	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142649470	G	G	142649470	1	3	43	0	1	0	0	0	0	0	0	0	8212	754	26	4		4	KEL	7	142649470	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	81606	142649470	16489193	328	49166											
KCNH2	3757	broad.mit.edu	37	chr7	150648759	150648759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccatgtgtggctgctcCatgttgccgatggcgtacca	13	11	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150648759	A	A	150648759	3	1	43	1	0	0	0	0	1	0	0	0	8102	594	21	2	2062	2	KCNH2	7	150648759	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7999289	150648759	8489904	329	49167											
PRKAG2	51422	broad.mit.edu	37	chr7	151478165	151478165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcagcttcggtgccacCgtggatgtgtggctgcagaa	15	11	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151478165	A	A	151478165	1	1	43	0	1	0	0	0	0	0	0	0	12607	667	23	1		1	PRKAG2	7	151478165	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	829406	151478165	7660498	330	49168											
NCAPG2	54892	broad.mit.edu	37	chr7	158444966	158444966	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccatctagcgaaccccgtCctggggagttctgagtaccc	11	15	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158444966	A	A	158444966	1	1	43	0	1	0	0	0	0	0	0	0	10303	870	30	3		3	NCAPG2	7	158444966	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	6966801	158444966	693697	331	49169											
CSMD1	64478	broad.mit.edu	37	chr8	2910077	2910077	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggattcaagcttgaagccctCatgacattcatagaccactt	7	11	3	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2910077	T	T	2910077	3	4	43	1	0	0	0	0	1	0	0	0	3978	835	29	4	3211	4	CSMD1	8	2910077	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08		2910077	143453945	332	49170											
DOK2	9046	broad.mit.edu	37	chr8	21767487	21767487	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggccaggccacagggcagGggtgcatttttttttttttt	12	7	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21767487	C	C	21767487	1	2	43	0	1	0	0	0	0	0	0	0	4737	1247	43	4		4	DOK2	8	21767487	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	18857410	21767487	124596535	333	49171											
SLC25A37	51312	broad.mit.edu	37	chr8	23425904	23425904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaaggtaatgtttcatGgtcccagggaggggcagtag	16	6	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23425904	T	T	23425904	1	4	43	0	1	0	0	0	0	0	0	0	14615	1363	47	2		2	SLC25A37	8	23425904	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1658417	23425904	122938118	334	49172											
SNTG1	54212	broad.mit.edu	37	chr8	51415442	51415442	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatgaagattgtgcatgTaagcatttataaagaataga	9	2	0	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51415442	A	A	51415442	5	1	43	1	0	0	0	0	0	0	1	0	14988	1652	57	5	494	5	SNTG1	8	51415442	Splice_Site	SNP	T	TCGA-17-Z010-01A-01W-0746-08	27989538	51415442	94948580	335	49173											
PXDNL	137902	broad.mit.edu	37	chr8	52232477	52232477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctctggggaatcacttgGcattcctcggtctctgcaaa	9	12	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52232477	T	T	52232477	3	4	43	1	0	0	0	0	1	0	0	0	12956	1203	42	3	29	3	PXDNL	8	52232477	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	817035	52232477	94131545	336	49174											
PXDNL	137902	broad.mit.edu	37	chr8	52232546	52232546	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggactgggacagggagccgGgggacaaatctccaccacac	14	12	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52232546	C	C	52232546	3	2	43	1	0	0	0	0	1	0	0	0	12956	1232	43	4	98	4	PXDNL	8	52232546	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	69	52232546	94131476	337	49175											
PRDM14	63978	broad.mit.edu	37	chr8	70981373	70981373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccgtccaattcgactccCaaatggtgtgaactcccttt	6	14	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70981373	A	A	70981373	1	1	43	0	1	0	0	0	0	0	0	0	12561	609	21	2		2	PRDM14	8	70981373	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	18748827	70981373	75382649	338	49176											
TRPA1	8989	broad.mit.edu	37	chr8	72935022	72935022	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatacagcatgcaggaacCatgatttcacacgcagcaaa	7	10	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72935022	A	A	72935022	1	1	43	0	1	0	0	0	0	0	0	0	16702	609	21	2		2	TRPA1	8	72935022	3'UTR	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1953649	72935022	73429000	339	49177											
HNF4G	3174	broad.mit.edu	37	chr8	76476135	76476135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaattacgctaatgtgtattGgtgttatgtagggtttaatg	11	2	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76476135	C	C	76476135	1	2	43	0	1	0	0	0	0	0	0	0	7321	1363	47	4		4	HNF4G	8	76476135	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3541113	76476135	69887887	340	49178											
STMN2	11075	broad.mit.edu	37	chr8	80553843	80553843	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctgctcctccctctcacAcactcgggcacacatgcacg	6	21	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80553843	T	T	80553843	1	4	43	0	1	0	0	0	0	0	0	0	15427	174	6	5		5	STMN2	8	80553843	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	4077708	80553843	65810179	341	49179											
SLC26A7	115111	broad.mit.edu	37	chr8	92405985	92405985	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatttcctcctgctggctaTtctgaattaattgtgggtat	8	7	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92405985	G	G	92405985	1	3	43	0	1	0	0	0	0	0	0	0	14636	1508	52	5		5	SLC26A7	8	92405985	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	11852142	92405985	53958037	342	49180											
VPS13B	157680	broad.mit.edu	37	chr8	100160183	100160183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaatgtacctgcacaatttCcatggctgaattcaacttgc	6	11	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100160183	T	T	100160183	3	4	43	1	0	0	0	0	1	0	0	0	17317	855	30	4	2050	4	VPS13B	8	100160183	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7754198	100160183	46203839	343	49181											
DCAF13	25879	broad.mit.edu	37	chr8	104447974	104447974	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagtttgtgtctgctagtttCgataaatctattcgaatctt	8	6	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104447974	T	T	104447974	2	4	43	1	0	0	0	0	0	0	0	1	4299	883	31	4		4	DCAF13	8	104447974	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4287791	104447974	41916048	344	49182											
ENY2	56943	broad.mit.edu	37	chr8	110348348	110348348	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatatctgaaagtacatgttGatgtccaggttagcaagatg	10	5	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110348348	A	A	110348348	1	1	43	0	1	0	0	0	0	0	0	0	5188	1305	45	4		4	ENY2	8	110348348	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5900374	110348348	36015674	345	49183											
PKHD1L1	93035	broad.mit.edu	37	chr8	110432879	110432879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccatgacttcatacaattGcagttacaatatacccatga	4	10	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110432879	T	T	110432879	3	4	43	1	0	0	0	0	1	0	0	0	12067	1319	46	3	2747	3	PKHD1L1	8	110432879	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	84531	110432879	35931143	346	49184											
CSMD3	114788	broad.mit.edu	37	chr8	113256561	113256561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagttgagtttttgtctGgagcaaaggaaagcaatagt	12	3	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113256561	T	T	113256561	1	4	43	0	1	0	0	0	0	0	0	0	3980	1363	47	2		2	CSMD3	8	113256561	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2823682	113256561	33107461	347	49185											
CSMD3	114788	broad.mit.edu	37	chr8	113403104	113403104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagagataacatcttagacAgatactagacttgcaaatca	6	8	3	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113403104	T	T	113403104	1	4	43	0	1	0	0	0	0	0	0	0	3980	203	7	5		5	CSMD3	8	113403104	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	146543	113403104	32960918	348	49186											
CSMD3	114788	broad.mit.edu	37	chr8	114186138	114186138	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatttccacaagagctactCtgcaattctattaaaaagga	7	8	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114186138	A	A	114186138	3	1	43	1	0	0	0	0	1	0	0	0	3980	912	32	3	10873	3	CSMD3	8	114186138	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	783034	114186138	32177884	349	49187											
ANXA13	312	broad.mit.edu	37	chr8	124748110	124748110	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccttctgagagggtgtacGactggctctgaggattaaaa	13	7	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124748110	C	C	124748110	1	2	43	0	1	0	0	0	0	0	0	0	717	1059	37	4		4	ANXA13	8	124748110	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	10561972	124748110	21615912	350	49188											
FER1L6	654463	broad.mit.edu	37	chr8	125076606	125076606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatatttcagattcgctaaCagccactgagtcctctggag	9	10	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125076606	A	A	125076606	3	1	43	1	0	0	0	0	1	0	0	0	5872	478	17	3	3445	3	FER1L6	8	125076606	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	328496	125076606	21287416	351	49189											
MTSS1	9788	broad.mit.edu	37	chr8	125716189	125716189	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgagtcccattttacataTggcaatcagggcccaggata	9	9	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125716189	C	C	125716189	1	2	43	0	1	0	0	0	0	0	0	0	10056	1479	51	5		5	MTSS1	8	125716189	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	639583	125716189	20647833	352	49190											
GSDMC	56169	broad.mit.edu	37	chr8	130763646	130763646	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtccaataagtcctcaaTaaatgtttgtttgtttcatg	7	6	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130763646	A	A	130763646	1	1	43	0	1	0	0	0	0	0	0	0	6884	1421	49	5		5	GSDMC	8	130763646	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	5047457	130763646	15600376	353	49191											
TG	7038	broad.mit.edu	37	chr8	133984967	133984967	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagtccacacctatcccttCggatggtaccagaagcccag	9	14	0	1	rs141876854	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133984967	T	T	133984967	2	4	43	1	0	0	0	0	0	0	0	1	15936	883	31	4		4	TG	8	133984967	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3221321	133984967	12379055	354	49192											
FAM135B	51059	broad.mit.edu	37	chr8	139357806	139357807	+	Intron	INS	-	T	T													ttttgccagtgtggtaccccINSaacccatttgttcaagcccc					rs147505929	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139357807	T	T	139357806	6	5	43	0	1	1	1	0	0	0	0	0	5495	609	21	0		0	FAM135B	8	139357806	Intron	INS	-	TCGA-17-Z010-01A-01W-0746-08	5372839	139357806	7006216	355	49193											
FLJ43860	389690	broad.mit.edu	37	chr8	142487923	142487923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagaactcgtagctgtGggcgccctcactccggctca	12	14	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142487923	T	T	142487923	3	4	43	1	0	0	0	0	1	0	0	0	5987	1348	47	2	2718	2	FLJ43860	8	142487923	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3130117	142487923	3876099	356	49194											
RFX3	5991	broad.mit.edu	37	chr9	3247775	3247775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctcaagtttttcttttaCataggtacctgtataatata	5	6	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3247775	A	A	3247775	1	1	43	0	1	0	0	0	0	0	0	0	13372	493	17	3		3	RFX3	9	3247775	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08		3247775	137965656	357	49195											
PTPRD	5789	broad.mit.edu	37	chr9	8454451	8454451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgtatatgtaggctttGcccatcttccacgtgccagg	10	11	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8454451	T	T	8454451	1	4	43	0	1	0	0	0	0	0	0	0	12907	1334	46	3		3	PTPRD	9	8454451	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5206676	8454451	132758980	358	49196											
TMEM215	401498	broad.mit.edu	37	chr9	32784860	32784860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatatcaatcagatacaaGgcaggtgggaccacgagacc	11	9	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32784860	T	T	32784860	3	4	43	1	0	0	0	0	1	0	0	0	16261	1000	35	2	681	2	TMEM215	9	32784860	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	24330409	32784860	108428571	359	49197											
TPM2	7169	broad.mit.edu	37	chr9	35685710	35685710	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtagccaggcgctccTgggcccggtccagctcctcc	14	17	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35685710	A	A	35685710	3	1	43	1	0	0	0	0	1	0	0	0	16530	1580	55	5	741	5	TPM2	9	35685710	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	2900850	35685710	105527721	360	49198											
TLN1	7094	broad.mit.edu	37	chr9	35699475	35699475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctgggcaagaagcgggCaggggacaaagagcatcaca	17	8	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35699475	A	A	35699475	1	1	43	0	1	0	0	0	0	0	0	0	16070	725	25	3		3	TLN1	9	35699475	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	13765	35699475	105513956	361	49199											
FRMPD1	22844	broad.mit.edu	37	chr9	37745597	37745597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagagcagagaacccccaGggcaaggctgccaggctcaa	13	13	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37745597	T	T	37745597	3	4	43	1	0	0	0	0	1	0	0	0	6117	1000	35	2	3626	2	FRMPD1	9	37745597	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2046122	37745597	103467834	362	49200											
TMEM2	23670	broad.mit.edu	37	chr9	74347398	74347398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctctcatgtctacacCgtctatgatctcacccatgt	5	15	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74347398	A	A	74347398	3	1	43	1	0	0	0	0	1	0	0	0	16244	652	23	1	2791	1	TMEM2	9	74347398	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	36601801	74347398	66866033	363	49201											
TRPM6	140803	broad.mit.edu	37	chr9	77376484	77376484	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaagaggaacaaattaTatcttcaatcctttcaacac	3	8	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77376484	C	C	77376484	1	2	43	0	1	0	0	0	0	0	0	0	16715	1421	49	5		5	TRPM6	9	77376484	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	3029086	77376484	63836947	364	49202											
C9orf79	286234	broad.mit.edu	37	chr9	90500661	90500661	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcagctgccccgtcctcAgcaagtctctgatgccacaa	8	16	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90500661	G	G	90500661	3	3	43	1	0	0	0	0	1	0	0	0	2523	188	7	5	1273	5	C9orf79	9	90500661	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	13124177	90500661	50712770	365	49203											
TMEFF1	8577	broad.mit.edu	37	chr9	103279070	103279070	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgggtgagttggttgagggGaagggacaaagttatttaga	17	1	0	3	rs34482001		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103279070	A	A	103279070	1	1	43	0	1	0	0	0	0	0	0	0	16136	1189	41	4		4	TMEFF1	9	103279070	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	12778409	103279070	37934361	366	49204											
ZNF462	58499	broad.mit.edu	37	chr9	109691365	109691365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgccacgacattgatgcGtattacactcactgcttggc	9	12	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109691365	T	T	109691365	2	4	43	1	0	0	0	0	0	0	0	1	18053	1132	40	3		3	ZNF462	9	109691365	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6412295	109691365	31522066	367	49205											
ZNF462	58499	broad.mit.edu	37	chr9	109736601	109736601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcagcggggggcaggcaGcagagatggccttctaggga	19	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109736601	T	T	109736601	1	4	43	0	1	0	0	0	0	0	0	0	18053	986	34	3		3	ZNF462	9	109736601	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	45236	109736601	31476830	368	49206											
OR2K2	26248	broad.mit.edu	37	chr9	114090037	114090037	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccctctgctgaggtgattCtcagaatagtggaaaggatg	12	7	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114090037	G	G	114090037	3	3	43	1	0	0	0	0	1	0	0	0	11099	913	32	4	276	4	OR2K2	9	114090037	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4353436	114090037	27123394	369	49207											
ZFP37	7539	broad.mit.edu	37	chr9	115805895	115805895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgatgtacaacaaggtGtgacttttggctaaaggcta	10	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115805895	T	T	115805895	3	4	43	1	0	0	0	0	1	0	0	0	17774	1377	48	3	893	3	ZFP37	9	115805895	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1715858	115805895	25407536	370	49208											
ASTN2	23245	broad.mit.edu	37	chr9	119538064	119538064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagggggaaggagggaaGgaggagggaaggaggaggga	26	0	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119538064	T	T	119538064	1	4	43	0	1	0	0	0	0	0	0	0	1069	1015	35	2		2	ASTN2	9	119538064	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3732169	119538064	21675367	371	49209											
TLR4	7099	broad.mit.edu	37	chr9	120474768	120474768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagtttagccctgggagCcttttctggactatcaagtt	10	10	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120474768	A	A	120474768	3	1	43	1	0	0	0	0	1	0	0	0	16076	739	26	3	372	3	TLR4	9	120474768	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	936704	120474768	20738663	372	49210											
PBX3	5090	broad.mit.edu	37	chr9	128551056	128551056	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagctacttgggaggctgTggcaggagaatggcttgaac	15	9	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128551056	A	A	128551056	1	1	43	0	1	0	0	0	0	0	0	0	11588	1711	59	5		5	PBX3	9	128551056	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	8076288	128551056	12662375	373	49211											
ODF2	4957	broad.mit.edu	37	chr9	131221956	131221956	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggtgatgcactcacgtAgcagccctctttggtcacct	11	12	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131221956	C	C	131221956	1	2	43	0	1	0	0	0	0	0	0	0	10922	435	15	5		5	ODF2	9	131221956	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	2670900	131221956	9991475	374	49212											
PKN3	29941	broad.mit.edu	37	chr9	131476670	131476670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcccttgccctagactGcatgctcctctgtggcggct	11	15	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131476670	T	T	131476670	1	4	43	0	1	0	0	0	0	0	0	0	12076	1334	46	3		3	PKN3	9	131476670	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	254714	131476670	9736761	375	49213											
SETX	23064	broad.mit.edu	37	chr9	135144961	135144961	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaaactcaatccaacaAcagtaacaatgggtaaactt	4	9	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135144961	G	G	135144961	1	3	43	0	1	0	0	0	0	0	0	0	14254	58	2	5		5	SETX	9	135144961	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3668291	135144961	6068470	376	49214											
RALGDS	5900	broad.mit.edu	37	chr9	135975612	135975612	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggctggggagtggtgtGgacctgccccctctgccatc	16	13	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135975612	A	A	135975612	1	1	43	0	1	0	0	0	0	0	0	0	13124	1363	47	4		4	RALGDS	9	135975612	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	830651	135975612	5237819	377	49215											
MAN1B1	11253	broad.mit.edu	37	chr9	139982623	139982623	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttctacatcaacttggctGaccattggaaaggtatcaga	8	9	4	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139982623	T	T	139982623	3	4	43	1	0	0	0	0	1	0	0	0	9304	1290	45	3	322	3	MAN1B1	9	139982623	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4007011	139982623	1230808	378	49216											
FAM107B	83641	broad.mit.edu	37	chr10	14709774	14709774	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatactttttgcaagcctaCtaattaatatgagatcaaga	5	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14709774	G	G	14709774	1	3	43	0	1	0	0	0	0	0	0	0	5436	580	20	4		4	FAM107B	10	14709774	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08		14709774	120824973	379	49217											
FAM107B	83641	broad.mit.edu	37	chr10	14816535	14816535	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgagtatcagccacgccgGactgattgaaggaagcactc	11	10	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14816535	A	A	14816535	3	1	43	1	0	0	0	0	1	0	0	0	5436	1174	41	4	812	4	FAM107B	10	14816535	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	106761	14816535	120718212	380	49218											
ST8SIA6	338596	broad.mit.edu	37	chr10	17363108	17363108	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgatcatcaagccggtGgacaagcggtatgcagtcac	12	10	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17363108	T	T	17363108	2	4	43	1	0	0	0	0	0	0	0	1	15354	1335	47	2		2	ST8SIA6	10	17363108	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2546573	17363108	118171639	381	49219											
MASTL	84930	broad.mit.edu	37	chr10	27459686	27459686	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatcaaagaatcctcttttGaagaatcaaatattgaagat	6	6	3	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27459686	C	C	27459686	3	2	43	1	0	0	0	0	1	0	0	0	9420	1291	45	4	1828	4	MASTL	10	27459686	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	10096578	27459686	108075061	382	49220											
SVIL	6840	broad.mit.edu	37	chr10	29821409	29821409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggagtgaatcattctgcCagggacgtgcaagtgacaca	13	9	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29821409	A	A	29821409	1	1	43	0	1	0	0	0	0	0	0	0	15539	609	21	2		2	SVIL	10	29821409	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2361723	29821409	105713338	383	49221											
FRMPD2	143162	broad.mit.edu	37	chr10	49371393	49371393	+	Frame_Shift_Del	DEL	A	-	-													tccaagtctcatgatatcacAaactgaatagcagttttgcc					rs151138817	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49371393	-	-	49371393	7	5	43	1	0	1	0	1	0	0	0	0	6118	130	5	0	78	0	FRMPD2	10	49371393	Frame_Shift_Del	DEL	A	TCGA-17-Z010-01A-01W-0746-08	19549984	49371393	86163354	384	49222											
C10orf128	170371	broad.mit.edu	37	chr10	50376118	50376118	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtacccaccaggagcacaGaggtgggctcccaattgcca	11	13	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50376118	T	T	50376118	1	4	43	0	1	0	0	0	0	0	0	0	1603	957	33	3		3	C10orf128	10	50376118	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1004725	50376118	85158629	385	49223											
PCDH15	65217	broad.mit.edu	37	chr10	55877248	55877248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctgcattgtggtgtcgGggatggggtgcctgtttccg	17	7	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55877248	T	T	55877248	1	4	43	0	1	0	0	0	0	0	0	0	11605	1247	43	2		2	PCDH15	10	55877248	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5501130	55877248	79657499	386	49224											
PCDH15	65217	broad.mit.edu	37	chr10	55973670	55973671	+	Intron	DNP	GG	TT	TT													ttagcagttcataaacacaaGgaaataagatattagcttaa							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55973671	TT	TT	55973670	1	4	43	0	1	0	0	0	0	0	0	0	11605	1015	35	2		2	PCDH15	10	55973670	Intron	DNP	GG	TCGA-17-Z010-01A-01W-0746-08	96422	55973670	79561077	387	49225											
FAM13C	220965	broad.mit.edu	37	chr10	61022236	61022236	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttgctctcttctctccttCaggcatgtcaaggcagcatc	8	13	4	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61022236	A	A	61022236	2	1	43	1	0	0	0	0	0	0	0	1	5500	813	29	3		3	FAM13C	10	61022236	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5048566	61022236	74512511	388	49226											
ADAMTS14	140766	broad.mit.edu	37	chr10	72520444	72520444	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcatccctttgcccctgaGacaccaatccctggagcatc	7	17	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72520444	T	T	72520444	3	4	43	1	0	0	0	0	1	0	0	0	259	933	33	3	3602	3	ADAMTS14	10	72520444	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	11498208	72520444	63014303	389	49227											
OIT3	170392	broad.mit.edu	37	chr10	74678107	74678107	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccttcgtaattcattgcctCtgcttcaacaatgtgcaatt	6	11	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74678107	T	T	74678107	1	4	43	0	1	0	0	0	0	0	0	0	10944	928	32	4		4	OIT3	10	74678107	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2157663	74678107	60856640	390	49228											
DUSP13	51207	broad.mit.edu	37	chr10	76861638	76861638	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacccacctgtgggagtatcTggcccaggctgtgcacttct	11	14	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76861638	A	A	76861638	1	1	43	0	1	0	0	0	0	0	0	0	4853	1588	55	5		5	DUSP13	10	76861638	3'UTR	SNP	T	TCGA-17-Z010-01A-01W-0746-08	2183531	76861638	58673109	391	49229											
PCGF5	84333	broad.mit.edu	37	chr10	93038077	93038077	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattgatttcggttagaccAaggggcccagacctcactga	11	10	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93038077	G	G	93038077	1	3	43	0	1	0	0	0	0	0	0	0	11671	145	5	5		5	PCGF5	10	93038077	3'UTR	SNP	A	TCGA-17-Z010-01A-01W-0746-08	16176439	93038077	42496670	392	49230											
PLCE1	51196	broad.mit.edu	37	chr10	96025729	96025729	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccaggtacagggaatgcCacttggaatgtggtttttat	12	7	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96025729	T	T	96025729	1	4	43	0	1	0	0	0	0	0	0	0	12129	609	21	4		4	PLCE1	10	96025729	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2987652	96025729	39509018	393	49231											
SMC3	9126	broad.mit.edu	37	chr10	112344147	112344147	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaagagaaaaatctggagcAgtataatgtaagaacttcta	8	4	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112344147	T	T	112344147	3	4	43	1	0	0	0	0	1	0	0	0	14898	188	7	5	1348	5	SMC3	10	112344147	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	16318418	112344147	23190600	394	49232											
GPAM	57678	broad.mit.edu	37	chr10	113941420	113941420	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttaggctgagtgctttTaactcttatcctaaacttac	5	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113941420	C	C	113941420	1	2	43	0	1	0	0	0	0	0	0	0	6653	1769	61	5		5	GPAM	10	113941420	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1597273	113941420	21593327	395	49233											
HSPA12A	259217	broad.mit.edu	37	chr10	118440738	118440738	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggtctacggtgccacCgccactgtccacaaccacat	8	16	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118440738	T	T	118440738	3	4	43	1	0	0	0	0	1	0	0	0	7473	652	23	4	1091	4	HSPA12A	10	118440738	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4499318	118440738	17094009	396	49234											
ADAM12	8038	broad.mit.edu	37	chr10	127737770	127737770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcttgctgtttttcaatGggccctgttccagacttaca	8	10	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127737770	T	T	127737770	1	4	43	0	1	0	0	0	0	0	0	0	236	1363	47	2		2	ADAM12	10	127737770	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	9297032	127737770	7796977	397	49235											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651702	1651702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttctcaggctgtggatcatCctgctgccaatccagctgct	9	14	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1651702	A	A	1651702	3	1	43	1	0	0	0	0	1	0	0	0	8636	855	30	3	634	3	KRTAP5-5	11	1651702	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08		1651702	133354814	398	49236											
LSP1	4046	broad.mit.edu	37	chr11	1904722	1904722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgagtctgagcaaggagGggccaggcccagaggacact	16	9	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1904722	T	T	1904722	3	4	43	1	0	0	0	0	1	0	0	0	9150	1232	43	2	444	2	LSP1	11	1904722	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	253020	1904722	133101794	399	49237											
NAP1L4	4676	broad.mit.edu	37	chr11	2975954	2975954	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaccctcagccaaacctcAgcccctcacttttgatttac	3	18	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2975954	G	G	2975954	1	3	43	0	1	0	0	0	0	0	0	0	10253	203	7	5		5	NAP1L4	11	2975954	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1071232	2975954	132030562	400	49238											
OR51S1	119692	broad.mit.edu	37	chr11	4870609	4870609	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctccctgtgcacgcacCcatcctaatagtatatgcag	6	14	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4870609	A	A	4870609	1	1	43	0	1	0	0	0	0	0	0	0	11199	638	22	2		2	OR51S1	11	4870609	5'Flank	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1894655	4870609	130135907	401	49239											
OR2AG1	144125	broad.mit.edu	37	chr11	6806521	6806521	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaggcccttgcggacTttctgcgcagagaaaacacc	9	15	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6806521	A	A	6806521	3	1	43	1	0	0	0	0	1	0	0	0	11078	1609	56	5	255	5	OR2AG1	11	6806521	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1935912	6806521	128199995	402	49240											
SBF2	81846	broad.mit.edu	37	chr11	10024312	10024312	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatcatagacagtatacaCggaaagaaaaagccagtaat	7	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10024312	T	T	10024312	1	4	43	0	1	0	0	0	0	0	0	0	13971	551	19	4		4	SBF2	11	10024312	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3217791	10024312	124982204	403	49241											
MRVI1	10335	broad.mit.edu	37	chr11	10631409	10631409	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaagccctgaaaaaaaAgtgcttacttataaaatgtc	8	6	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10631409	G	G	10631409	1	3	43	0	1	0	0	0	0	0	0	0	9947	87	3	5		5	MRVI1	11	10631409	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	607097	10631409	124375107	404	49242											
KCNC1	3746	broad.mit.edu	37	chr11	17793327	17793327	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagatcgagaacgttcgcaAtggcacgcaagtgcgctact	13	10	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17793327	T	T	17793327	3	4	43	1	0	0	0	0	1	0	0	0	8084	101	4	5	692	5	KCNC1	11	17793327	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	7161918	17793327	117213189	405	49243											
KCNC1	3746	broad.mit.edu	37	chr11	17793919	17793919	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgcgctggcgggcgtgctCaccatcgccatgcccgtgcc	14	16	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17793919	T	T	17793919	2	4	43	1	0	0	0	0	0	0	0	1	8084	813	29	4		4	KCNC1	11	17793919	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	592	17793919	117212597	406	49244											
MRGPRX3	117195	broad.mit.edu	37	chr11	18159367	18159367	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggattctctgtggatcCcggaagatgccgctgaccag	13	11	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18159367	A	A	18159367	2	1	43	1	0	0	0	0	0	0	0	1	9862	610	22	2		2	MRGPRX3	11	18159367	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	365448	18159367	116847149	407	49245											
IGSF22	283284	broad.mit.edu	37	chr11	18730952	18730952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggtggtggcatggcacGgacccccttgtctagctcca	12	14	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18730952	T	T	18730952	3	4	43	1	0	0	0	0	1	0	0	0	7670	1116	39	1	1024	1	IGSF22	11	18730952	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	571585	18730952	116275564	408	49246											
NAV2	89797	broad.mit.edu	37	chr11	19649302	19649302	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtctcccatctatgcactGacggtgatggatgagatggg	13	9	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19649302	A	A	19649302	1	1	43	0	1	0	0	0	0	0	0	0	10278	1305	45	4		4	NAV2	11	19649302	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	918350	19649302	115357214	409	49247											
NELL1	4745	broad.mit.edu	37	chr11	20961772	20961773	+	Intron	DNP	CC	AA	AA													tctgtatgtgtgtgagtgtgCcttgttctctgcaaccccta							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20961773	AA	AA	20961772	1	1	43	0	1	0	0	0	0	0	0	0	10428	754	26	3		3	NELL1	11	20961772	Intron	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	1312470	20961772	114044744	410	49248											
LUZP2	338645	broad.mit.edu	37	chr11	24750668	24750668	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtgattatgactgatgccAagtggaaccatttggggggc	14	6	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24750668	T	T	24750668	1	4	43	0	1	0	0	0	0	0	0	0	9174	145	5	5		5	LUZP2	11	24750668	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3788896	24750668	110255848	411	49249											
C11orf41	25758	broad.mit.edu	37	chr11	33640005	33640005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacccttcattggttgcctGtactttggatcagtggagaa	10	8	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33640005	T	T	33640005	1	4	43	0	1	0	0	0	0	0	0	0	1652	1392	48	3		3	C11orf41	11	33640005	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	8889337	33640005	101366511	412	49250											
LDLRAD3	143458	broad.mit.edu	37	chr11	36248861	36248861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcctggaccacccccaCcactgcaacgtcacctacaa	7	18	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36248861	A	A	36248861	3	1	43	1	0	0	0	0	1	0	0	0	8779	506	18	3	699	3	LDLRAD3	11	36248861	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2608856	36248861	98757655	413	49251											
TP53I11	9537	broad.mit.edu	37	chr11	44956347	44956347	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggggcagggcaggggacCctcctgccttccaggagcca	15	14	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44956347	A	A	44956347	1	1	43	0	1	0	0	0	0	0	0	0	16509	638	22	2		2	TP53I11	11	44956347	3'UTR	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8707486	44956347	90050169	414	49252											
CHST1	8534	broad.mit.edu	37	chr11	45672125	45672125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcgcggctggcgcctaGcatgacccgccggtcggccg	17	15	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45672125	T	T	45672125	3	4	43	1	0	0	0	0	1	0	0	0	3428	962	34	3	890	3	CHST1	11	45672125	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	715778	45672125	89334391	415	49253											
AGBL2	79841	broad.mit.edu	37	chr11	47736297	47736297	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataggcagctgattacacaaGagaagctacaaagccacaag	9	9	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47736297	C	C	47736297	1	2	43	0	1	0	0	0	0	0	0	0	376	957	33	4		4	AGBL2	11	47736297	5'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2064172	47736297	87270219	416	49254											
PTPRJ	5795	broad.mit.edu	37	chr11	48161351	48161351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctacaaggcaggggctgGtcagttggcactgtgatcac	16	9	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48161351	T	T	48161351	1	4	43	0	1	0	0	0	0	0	0	0	12912	1276	44	3		3	PTPRJ	11	48161351	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	425054	48161351	86845165	417	49255											
OR8H2	390151	broad.mit.edu	37	chr11	55873058	55873058	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcatcactttttctgtgaCacttccccaattttagctct	3	12	4	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55873058	G	G	55873058	3	3	43	1	0	0	0	0	1	0	0	0	11332	477	17	4	542	4	OR8H2	11	55873058	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7711707	55873058	79133458	418	49256											
OR8J1	219477	broad.mit.edu	37	chr11	56125385	56125385	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttaatgcagaagtacacCggaaggacatcatgggccag	12	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56125385	A	A	56125385	1	1	43	0	1	0	0	0	0	0	0	0	11335	667	23	1		1	OR8J1	11	56125385	5'Flank	SNP	C	TCGA-17-Z010-01A-01W-0746-08	252327	56125385	78881131	419	49257											
OR5M9	390162	broad.mit.edu	37	chr11	56230020	56230020	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatttctcagactgtagatCatgggattcaacataggaat	8	6	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56230020	A	A	56230020	3	1	43	1	0	0	0	0	1	0	0	0	11271	826	29	3	76	3	OR5M9	11	56230020	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	104635	56230020	78776496	420	49258											
OR5M11	219487	broad.mit.edu	37	chr11	56310158	56310158	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatggcatgctctttgacAtaagtatcagaacaagaaag	8	7	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56310158	T	T	56310158	4	4	43	1	0	0	0	0	0	1	0	0	11268	224	8	5	344	5	OR5M11	11	56310158	Nonsense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	80138	56310158	78696358	421	49259											
OR5M11	219487	broad.mit.edu	37	chr11	56310375	56310375	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catatatggccacatagcggTcataggccattgctgccagc	10	12	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56310375	G	G	56310375	3	3	43	1	0	0	0	0	1	0	0	0	11268	1667	58	5	561	5	OR5M11	11	56310375	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	217	56310375	78696141	422	49260											
OR1S1	219959	broad.mit.edu	37	chr11	57982975	57982975	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtggaaagccttctccacTtgtggctctcacctgacagt	9	12	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57982975	C	C	57982975	2	2	43	1	0	0	0	0	0	0	0	1	11066	1596	56	5		5	OR1S1	11	57982975	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1672600	57982975	77023541	423	49261											
OR5A1	219982	broad.mit.edu	37	chr11	59211010	59211010	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgactgctatggcataCgaccgatatgcagccatctc	8	14	1	1	rs139346783	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59211010	T	T	59211010	2	4	43	1	0	0	0	0	0	0	0	1	11233	547	19	4		4	OR5A1	11	59211010	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1228035	59211010	75795506	424	49262											
AHNAK	79026	broad.mit.edu	37	chr11	62287500	62287500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcacatccacatctggacCttctcctttgaagccaggca	7	15	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62287500	A	A	62287500	3	1	43	1	0	0	0	0	1	0	0	0	414	681	24	2	3403	2	AHNAK	11	62287500	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3076490	62287500	72719016	425	49263											
HRASLS2	54979	broad.mit.edu	37	chr11	63325807	63325807	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccagcagggacccagcctCtggcagctgagggagtggcc	15	15	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63325807	A	A	63325807	1	1	43	0	1	0	0	0	0	0	0	0	7417	928	32	3		3	HRASLS2	11	63325807	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1038307	63325807	71680709	426	49264											
STIP1	10963	broad.mit.edu	37	chr11	63971419	63971419	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgggcctcgccaggacccCtccctgccggggccttctgt	12	20	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63971419	G	G	63971419	1	3	43	0	1	0	0	0	0	0	0	0	15403	696	24	4		4	STIP1	11	63971419	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	645612	63971419	71035097	427	49265											
BBS1	582	broad.mit.edu	37	chr11	66278094	66278094	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcactattgggcgttacgcGagggcggggccggttgccag	19	10	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66278094	C	C	66278094	1	2	43	0	1	0	0	0	0	0	0	0	1340	1073	37	4		4	BBS1	11	66278094	5'Flank	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2306675	66278094	68728422	428	49266											
CHKA	1119	broad.mit.edu	37	chr11	67842099	67842099	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaacagtgaaaacacagcAttgcaggttcttgcagcaat	9	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67842099	G	G	67842099	1	3	43	0	1	0	0	0	0	0	0	0	3378	232	8	5		5	CHKA	11	67842099	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1564005	67842099	67164417	429	49267											
ARHGEF17	9828	broad.mit.edu	37	chr11	73066631	73066631	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctatatcgataacttcctCaatgcaaaggatgctgtgcg	9	10	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73066631	T	T	73066631	2	4	43	1	0	0	0	0	0	0	0	1	902	813	29	4		4	ARHGEF17	11	73066631	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5224532	73066631	61939885	430	49268											
PPME1	51400	broad.mit.edu	37	chr11	73941432	73941432	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttgggtctgtgcatgattGatgttgtagaaggtgagttt	14	3	2	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73941432	A	A	73941432	3	1	43	1	0	0	0	0	1	0	0	0	12448	1290	45	4	563	4	PPME1	11	73941432	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	874801	73941432	61065084	431	49269											
WNT11	7481	broad.mit.edu	37	chr11	75902507	75902507	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagggtctccattcccCacatgccacctgagtccctg	9	16	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75902507	G	G	75902507	1	3	43	0	1	0	0	0	0	0	0	0	17511	609	21	4		4	WNT11	11	75902507	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1961075	75902507	59104009	432	49270											
PRKRIR	5612	broad.mit.edu	37	chr11	76077069	76077069	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagctcagcatttaaatttCagccttcagttttaaggcaa	7	8	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76077069	G	G	76077069	1	3	43	0	1	0	0	0	0	0	0	0	12632	841	29	4		4	PRKRIR	11	76077069	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	174562	76077069	58929447	433	49271											
DLG2	1740	broad.mit.edu	37	chr11	83194499	83194499	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttaaaaaaactttcaccCcaaactccttgagctgagat	4	11	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83194499	G	G	83194499	1	3	43	0	1	0	0	0	0	0	0	0	4595	638	22	4		4	DLG2	11	83194499	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7117430	83194499	51812017	434	49272											
FAT3	120114	broad.mit.edu	37	chr11	92086011	92086011	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaactgtatgggaacaatGgagtgagcagtactgcaaag	13	5	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92086011	T	T	92086011	4	4	43	1	0	0	0	0	0	1	0	0	5748	1349	47	2	735	2	FAT3	11	92086011	Nonsense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	8891512	92086011	42920505	435	49273											
AMOTL1	154810	broad.mit.edu	37	chr11	94603922	94603922	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagcttgctgcacaagcccGagttccctgatggagagatg	13	11	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94603922	C	C	94603922	3	2	43	1	0	0	0	0	1	0	0	0	583	1059	37	4	2883	4	AMOTL1	11	94603922	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2517911	94603922	40402594	436	49274											
MMP27	64066	broad.mit.edu	37	chr11	102562424	102562424	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accagcaacttgttgttaaaGaatggttttattctattttg	7	5	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102562424	T	T	102562424	1	4	43	0	1	0	0	0	0	0	0	0	9758	957	33	3		3	MMP27	11	102562424	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	7958502	102562424	32444092	437	49275											
PDGFD	80310	broad.mit.edu	37	chr11	103814370	103814370	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttactgatggagagttataGgataccccctaagagtgaca	11	7	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103814370	A	A	103814370	2	1	43	1	0	0	0	0	0	0	0	1	11754	987	35	4		4	PDGFD	11	103814370	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1251946	103814370	31192146	438	49276											
CLDN25	644672	broad.mit.edu	37	chr11	113651176	113651176	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcagatggctccttccaccTcatgctaagacctaggaacc	8	14	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113651176	A	A	113651176	3	1	43	1	0	0	0	0	1	0	0	0	3517	1551	54	5	661	5	CLDN25	11	113651176	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	9836806	113651176	21355340	439	49277											
AMICA1	120425	broad.mit.edu	37	chr11	118065007	118065007	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacaggagagagtctccaCcgctgctgagatgaagggac	13	11	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118065007	A	A	118065007	1	1	43	0	1	0	0	0	0	0	0	0	574	522	18	3		3	AMICA1	11	118065007	3'UTR	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4413831	118065007	16941509	440	49278											
OR10G7	390265	broad.mit.edu	37	chr11	123909453	123909453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatagtcctgccgcttgGggacaccaaggtcatcagca	13	11	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123909453	T	T	123909453	3	4	43	1	0	0	0	0	1	0	0	0	10996	1232	43	2	683	2	OR10G7	11	123909453	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5844446	123909453	11097063	441	49279											
OR8B12	219858	broad.mit.edu	37	chr11	124413483	124413483	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggaagaagagggggatcCgcagtcccggctggtgggtt	18	8	0	2	rs140680123		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124413483	T	T	124413483	3	4	43	1	0	0	0	0	1	0	0	0	11320	652	23	4	866	4	OR8B12	11	124413483	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	504030	124413483	10593033	442	49280											
ARHGAP32	9743	broad.mit.edu	37	chr11	128842725	128842725	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaagataagaaggaggctGatctccactgtagaaacggg	12	8	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128842725	A	A	128842725	4	1	43	1	0	0	0	0	0	1	0	0	883	1299	45	4	2637	4	ARHGAP32	11	128842725	Nonsense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4429242	128842725	6163791	443	49281											
CACNA1C	775	broad.mit.edu	37	chr12	2797765	2797765	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcttgagggggtcgagtcCagtgagaaactcaacagcag	15	9	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2797765	A	A	2797765	2	1	43	1	0	0	0	0	0	0	0	1	2566	581	21	2		2	CACNA1C	12	2797765	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08		2797765	131054130	444	49282											
PRMT8	56341	broad.mit.edu	37	chr12	3659225	3659225	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggatcctttccatgttcGctgccaaggcaggggccaag	13	12	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3659225	A	A	3659225	3	1	43	1	0	0	0	0	1	0	0	0	12648	1087	38	4	395	4	PRMT8	12	3659225	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	861460	3659225	130192670	445	49283											
CD163	9332	broad.mit.edu	37	chr12	7640520	7640521	+	Frame_Shift_Ins	INS	-	A	A													ctccaaagtgagctccccccINSaggatagagacaactgtgcc							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7640521	A	A	7640520	7	5	43	1	0	1	1	0	0	0	0	0	2997	581	21	0	1926	0	CD163	12	7640520	Frame_Shift_Ins	INS	-	TCGA-17-Z010-01A-01W-0746-08	3981295	7640520	126211375	446	49284											
SLCO1B3	28234	broad.mit.edu	37	chr12	21196235	21196235	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacctactgtatttcaaaaTgatttttgactggcttcttt	6	7	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21196235	C	C	21196235	1	2	43	0	1	0	0	0	0	0	0	0	14838	1479	51	5		5	SLCO1B3	12	21196235	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	13555715	21196235	112655660	447	49285											
GYS2	2998	broad.mit.edu	37	chr12	21721684	21721684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatacataaaaagagctgCgtggtaactgaatgcaattt	8	5	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21721684	A	A	21721684	1	1	43	0	1	0	0	0	0	0	0	0	6978	783	27	3		3	GYS2	12	21721684	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	525449	21721684	112130211	448	49286											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	43	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3676600	25398284	108453611	449	49287											
TMTC1	83857	broad.mit.edu	37	chr12	29736468	29736468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgattcagccaagtgcagagCttgctcagtccatgcacaaa	9	12	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29736468	A	A	29736468	3	1	43	1	0	0	0	0	1	0	0	0	16383	796	28	3	1402	3	TMTC1	12	29736468	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4338184	29736468	104115427	450	49288											
TMTC1	83857	broad.mit.edu	37	chr12	29904489	29904489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggaagcatgaagagagGgaggtcacagtgtgctgact	18	5	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29904489	T	T	29904489	1	4	43	0	1	0	0	0	0	0	0	0	16383	1247	43	2		2	TMTC1	12	29904489	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	168021	29904489	103947406	451	49289											
DDX11	1663	broad.mit.edu	37	chr12	31246188	31246188	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcttctcaggaagcgtttGaaggccaagaacctgatgta	10	9	2	3	rs141182085	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31246188	T	T	31246188	3	4	43	1	0	0	0	0	1	0	0	0	4376	1281	45	3	1341	3	DDX11	12	31246188	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1341699	31246188	102605707	452	49290											
DDX11	1663	broad.mit.edu	37	chr12	31256562	31256562	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcgtagtgctcctggaccAgcgatatgcccggccccctg	12	16	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31256562	T	T	31256562	2	4	43	1	0	0	0	0	0	0	0	1	4376	188	7	5		5	DDX11	12	31256562	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08	10374	31256562	102595333	453	49291											
DENND5B	160518	broad.mit.edu	37	chr12	31697450	31697450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggtctcgaggtcctgggCtcaagtgatcctcccacctc	11	15	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31697450	A	A	31697450	1	1	43	0	1	0	0	0	0	0	0	0	4477	812	28	3		3	DENND5B	12	31697450	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	440888	31697450	102154445	454	49292											
CNTN1	1272	broad.mit.edu	37	chr12	41421797	41421797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaaatagtgatgattaatGtttgcaattcttgctatttc	6	5	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41421797	T	T	41421797	1	4	43	0	1	0	0	0	0	0	0	0	3672	1392	48	3		3	CNTN1	12	41421797	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	9724347	41421797	92430098	455	49293											
SLC38A4	55089	broad.mit.edu	37	chr12	47170676	47170676	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catatagagaatgactttcaGagtgacctaccatagaaggt	9	7	1	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47170676	C	C	47170676	1	2	43	0	1	0	0	0	0	0	0	0	14720	957	33	4		4	SLC38A4	12	47170676	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5748879	47170676	86681219	456	49294											
FAIM2	23017	broad.mit.edu	37	chr12	50278643	50278643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggcacctgtagtcccaGctccttgggagactgaggca	15	12	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50278643	T	T	50278643	1	4	43	0	1	0	0	0	0	0	0	0	5422	986	34	3		3	FAIM2	12	50278643	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3107967	50278643	83573252	457	49295											
KRT83	3889	broad.mit.edu	37	chr12	52710329	52710329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgatctcctccttggtgcGgcgcagggtctccccgtgcc	13	15	2	1	rs145387028		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52710329	T	T	52710329	3	4	43	1	0	0	0	0	1	0	0	0	8568	1116	39	1	533	1	KRT83	12	52710329	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2431686	52710329	81141566	458	49296											
AMHR2	269	broad.mit.edu	37	chr12	53818674	53818674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggctcccagggtccccaGgctgccccaggtagccaccc	11	20	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53818674	T	T	53818674	3	4	43	1	0	0	0	0	1	0	0	0	573	991	35	2	424	2	AMHR2	12	53818674	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1108345	53818674	80033221	459	49297											
OR6C75	390323	broad.mit.edu	37	chr12	55759235	55759235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagaattttaccttctggCtgccatgtcctatgaccgct	8	12	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55759235	A	A	55759235	3	1	43	1	0	0	0	0	1	0	0	0	11293	797	28	3	343	3	OR6C75	12	55759235	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1940561	55759235	78092660	460	49298											
MON2	23041	broad.mit.edu	37	chr12	62861048	62861048	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagaatatgcagagcgacTtgcgcgccttgtcactggag	14	9	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62861048	C	C	62861048	2	2	43	1	0	0	0	0	0	0	0	1	9794	1606	56	5		5	MON2	12	62861048	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	7101813	62861048	70990847	461	49299											
GRIP1	23426	broad.mit.edu	37	chr12	66849137	66849137	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggtattttcaaggctccaTtgcccacaggttttttccag	8	11	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66849137	C	C	66849137	1	2	43	0	1	0	0	0	0	0	0	0	6853	1508	52	5		5	GRIP1	12	66849137	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	3988089	66849137	67002758	462	49300											
BEST3	144453	broad.mit.edu	37	chr12	70051351	70051351	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacttaaagccttgcccttGaactacaaatgctcatcatg	5	12	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70051351	T	T	70051351	1	4	43	0	1	0	0	0	0	0	0	0	1411	1305	45	3		3	BEST3	12	70051351	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3202214	70051351	63800544	463	49301											
CNOT2	4848	broad.mit.edu	37	chr12	70723393	70723393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttcaaaatgtatcttgGtagagtaaacaaacttttag	6	4	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70723393	T	T	70723393	1	4	43	0	1	0	0	0	0	0	0	0	3651	1276	44	3		3	CNOT2	12	70723393	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	672042	70723393	63128502	464	49302											
PTPRR	5801	broad.mit.edu	37	chr12	71056254	71056254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatctactttgtagatgGctatagctacataatcttac	5	9	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71056254	T	T	71056254	1	4	43	0	1	0	0	0	0	0	0	0	12918	1218	42	3		3	PTPRR	12	71056254	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	332861	71056254	62795641	465	49303											
NAV3	89795	broad.mit.edu	37	chr12	78334223	78334223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccagattattggtaagcCcttccttctgaaagaaagca	7	10	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78334223	A	A	78334223	1	1	43	0	1	0	0	0	0	0	0	0	10279	638	22	2		2	NAV3	12	78334223	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7277969	78334223	55517672	466	49304											
NAV3	89795	broad.mit.edu	37	chr12	78521058	78521058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgtgctgtctctcttcCttctttgtttgtttgcaatg	8	8	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78521058	A	A	78521058	1	1	43	0	1	0	0	0	0	0	0	0	10279	696	24	2		2	NAV3	12	78521058	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	186835	78521058	55330837	467	49305											
DCN	1634	broad.mit.edu	37	chr12	91539818	91539818	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgccaggttataaaaatGagggctttcttgagaattac	9	5	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91539818	C	C	91539818	1	2	43	0	1	0	0	0	0	0	0	0	4330	1305	45	4		4	DCN	12	91539818	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	13018760	91539818	42312077	468	49306											
CCDC41	51134	broad.mit.edu	37	chr12	94817787	94817787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatccctggtgtcagaaCtgaacctgaaggctgcatga	11	11	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94817787	A	A	94817787	1	1	43	0	1	0	0	0	0	0	0	0	2840	580	20	3		3	CCDC41	12	94817787	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3277969	94817787	39034108	469	49307											
CMKLR1	1240	broad.mit.edu	37	chr12	108685616	108685616	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaggggttccacagtgagGatcaaagcatgccggtctcc	13	10	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108685616	T	T	108685616	1	4	43	0	1	0	0	0	0	0	0	0	3611	1189	41	3		3	CMKLR1	12	108685616	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	13867829	108685616	25166279	470	49308											
SART3	9733	broad.mit.edu	37	chr12	108917427	108917427	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctaaaagagcaaacaCtgaatggaccttttgaagca	7	11	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108917427	G	G	108917427	1	3	43	0	1	0	0	0	0	0	0	0	13959	580	20	4		4	SART3	12	108917427	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	231811	108917427	24934468	471	49309											
SRRM4	84530	broad.mit.edu	37	chr12	119563201	119563201	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagatctcgaagccggccCcgaaagtctcaccgccaccg	9	18	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119563201	A	A	119563201	2	1	43	1	0	0	0	0	0	0	0	1	15289	610	22	2		2	SRRM4	12	119563201	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	10645774	119563201	14288694	472	49310											
CABP1	9478	broad.mit.edu	37	chr12	121098793	121098793	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaggggggcaatgacactGgagaaggagctcaactttgg	15	6	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121098793	C	C	121098793	1	2	43	0	1	0	0	0	0	0	0	0	2557	1363	47	4		4	CABP1	12	121098793	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1535592	121098793	12753102	473	49311											
STX2	2054	broad.mit.edu	37	chr12	131293160	131293160	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacattactttaatctaaacGaggctgatagcaaacctggg	9	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131293160	A	A	131293160	1	1	43	0	1	0	0	0	0	0	0	0	15463	1073	37	4		4	STX2	12	131293160	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	10194367	131293160	2558735	474	49312											
MIPEP	4285	broad.mit.edu	37	chr13	24437451	24437451	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatgatcgaaggcactgagCaggggaggggcaggggaggc	21	6	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24437451	T	T	24437451	1	4	43	0	1	0	0	0	0	0	0	0	9685	725	25	4		4	MIPEP	13	24437451	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08		24437451	90732427	475	49313											
PABPC3	5042	broad.mit.edu	37	chr13	25670320	25670320	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcggcttgtgtgcctgcGggcagccgtgccgagaatga	17	11	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25670320	T	T	25670320	1	4	43	0	1	0	0	0	0	0	0	0	11459	1131	39	1		1	PABPC3	13	25670320	5'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1232869	25670320	89499558	476	49314											
NEK5	341676	broad.mit.edu	37	chr13	52639627	52639627	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacagactcactgtcaggCcccgtggggcaggtggaggt	16	11	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52639627	A	A	52639627	2	1	43	1	0	0	0	0	0	0	0	1	10422	726	26	3		3	NEK5	13	52639627	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	26969307	52639627	62530251	477	49315											
OLFM4	10562	broad.mit.edu	37	chr13	53603187	53603187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcccaggtgaggaggccCcagaatctgaatgagctgca	14	10	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53603187	A	A	53603187	1	1	43	0	1	0	0	0	0	0	0	0	10950	638	22	2		2	OLFM4	13	53603187	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	963560	53603187	61566691	478	49316											
SLC15A1	6564	broad.mit.edu	37	chr13	99362207	99362207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattatttggggatgtggGtttttaaaattttacaagtc	10	2	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99362207	T	T	99362207	1	4	43	0	1	0	0	0	0	0	0	0	14511	1276	44	3		3	SLC15A1	13	99362207	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	45759020	99362207	15807671	479	49317											
NALCN	259232	broad.mit.edu	37	chr13	101735418	101735418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatacaaaattcattcccGgagtcttagggtgaaacgaa	9	7	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101735418	T	T	101735418	1	4	43	0	1	0	0	0	0	0	0	0	10242	1131	39	1		1	NALCN	13	101735418	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2373211	101735418	13434460	480	49318											
NALCN	259232	broad.mit.edu	37	chr13	101736178	101736178	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taacagacaaaagaaagcagGaaaaggccttttgtcatgtg	10	6	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101736178	T	T	101736178	1	4	43	0	1	0	0	0	0	0	0	0	10242	1189	41	3		3	NALCN	13	101736178	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	760	101736178	13433700	481	49319											
NALCN	259232	broad.mit.edu	37	chr13	101936254	101936254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcaaagacctttgctggGcgatttttaaaaatgtcatt	7	6	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101936254	T	T	101936254	1	4	43	0	1	0	0	0	0	0	0	0	10242	1218	42	3		3	NALCN	13	101936254	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	200076	101936254	13233624	482	49320											
TFDP1	7027	broad.mit.edu	37	chr13	114294517	114294517	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccagggtggagactccgGtgtcctacgtcggggaggac	17	11	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114294517	T	T	114294517	3	4	43	1	0	0	0	0	1	0	0	0	15920	1261	44	3	1210	3	TFDP1	13	114294517	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	12358263	114294517	875361	483	49321											
RNASE2	6036	broad.mit.edu	37	chr14	21387723	21387723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcagattggcctgtggGgtgagacactatggtgtgtg	18	6	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21387723	T	T	21387723	1	4	43	0	1	0	0	0	0	0	0	0	13515	1247	43	2		2	RNASE2	14	21387723	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08		21387723	85961817	484	49322											
RNF31	55072	broad.mit.edu	37	chr14	24620140	24620140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagggctgagctggtctgGgaaaggagatgctgcaggtg	20	5	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24620140	T	T	24620140	1	4	43	0	1	0	0	0	0	0	0	0	13598	1247	43	2		2	RNF31	14	24620140	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3232417	24620140	82729400	485	49323											
C14orf21	161424	broad.mit.edu	37	chr14	24770785	24770786	+	Intron	INS	-	CC	CC													tggatggcagtttgtgatctINSccccactgcacatgttctta							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	24770786	CC	CC	24770785	6	5	43	0	1	1	1	0	0	0	0	0	1782	1566	54	0		0	C14orf21	14	24770785	Intron	INS	-	TCGA-17-Z010-01A-01W-0746-08	150645	24770785	82578755	486	49324											
AKAP6	9472	broad.mit.edu	37	chr14	33242914	33242914	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgaaatcaagcaacgacgtCgaggagttgcctccattctg	11	10	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33242914	T	T	33242914	4	4	43	1	0	0	0	0	0	1	0	0	455	876	31	4	3445	4	AKAP6	14	33242914	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8472129	33242914	74106626	487	49325											
FANCM	57697	broad.mit.edu	37	chr14	45644661	45644661	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaatgataaaaggacatcaGatacagatgaaattgctgcc	8	7	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45644661	C	C	45644661	3	2	43	1	0	0	0	0	1	0	0	0	5728	942	33	4	2758	4	FANCM	14	45644661	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	12401747	45644661	61704879	488	49326											
FANCM	57697	broad.mit.edu	37	chr14	45645426	45645426	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacccttgaacagtaaaagcGaatctttacctgtgtcagac	7	11	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45645426	A	A	45645426	3	1	43	1	0	0	0	0	1	0	0	0	5728	1059	37	4	3523	4	FANCM	14	45645426	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	765	45645426	61704114	489	49327											
ERO1L	30001	broad.mit.edu	37	chr14	53119002	53119002	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccccagcaaaaaatgaattCtcatcaaaatgcaaaggaaa	5	9	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53119002	T	T	53119002	2	4	43	1	0	0	0	0	0	0	0	1	5281	912	32	4		4	ERO1L	14	53119002	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	7473576	53119002	54230538	490	49328											
SLC35F4	341880	broad.mit.edu	37	chr14	58033208	58033208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacctgcatttccaggaaCgctgagcactgtcccaatgg	10	12	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58033208	T	T	58033208	3	4	43	1	0	0	0	0	1	0	0	0	14705	536	19	4	264	4	SLC35F4	14	58033208	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4914206	58033208	49316332	491	49329											
SIPA1L1	26037	broad.mit.edu	37	chr14	72117072	72117072	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaactaccagcagaaagtAggcatcatgtactgcaaagc	9	10	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72117072	T	T	72117072	2	4	43	1	0	0	0	0	0	0	0	1	14442	407	15	5		5	SIPA1L1	14	72117072	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08	14083864	72117072	35232468	492	49330											
AHNAK2	113146	broad.mit.edu	37	chr14	105415933	105415933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacatccacctccatgctgGgcagagacacctcgacatcg	10	15	0	1	rs79599750	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105415933	T	T	105415933	3	4	43	1	0	0	0	0	1	0	0	0	415	1232	43	2	11536	2	AHNAK2	14	105415933	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	33298861	105415933	1933607	493	49331											
AHNAK2	113146	broad.mit.edu	37	chr14	105416781	105416781	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttgcctggggccgacacCccaaatgatggcatcttgaa	11	12	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105416781	T	T	105416781	2	4	43	1	0	0	0	0	0	0	0	1	415	610	22	4		4	AHNAK2	14	105416781	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	848	105416781	1932759	494	49332											
MAGEL2	54551	broad.mit.edu	37	chr15	23889629	23889629	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagcttgttgatgataatAtaggcgtggtttttggtatc	11	6	0	2	rs150927765	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23889629	G	G	23889629	2	3	43	1	0	0	0	0	0	0	0	1	9281	456	16	5		5	MAGEL2	15	23889629	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08		23889629	78641763	495	49333											
GABRA5	2558	broad.mit.edu	37	chr15	27126012	27126012	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttttcacagatgccaaccAgttcagtgaaagatgagacc	9	10	2	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27126012	T	T	27126012	3	4	43	1	0	0	0	0	1	0	0	0	6224	188	7	5	112	5	GABRA5	15	27126012	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3236383	27126012	75405380	496	49334											
GABRG3	2567	broad.mit.edu	37	chr15	27571917	27571917	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattatacagaacatttatTaatagaactgtcttgcctct	4	7	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27571917	A	A	27571917	1	1	43	0	1	0	0	0	0	0	0	0	6233	1769	61	5		5	GABRG3	15	27571917	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	445905	27571917	74959475	497	49335											
TRPM1	4308	broad.mit.edu	37	chr15	31293950	31293950	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatgtttttagaaattgatGatgtttagatggccaagatg	10	2	0	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31293950	A	A	31293950	1	1	43	0	1	0	0	0	0	0	0	0	16710	1305	45	4		4	TRPM1	15	31293950	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3722033	31293950	71237442	498	49336											
TRPM1	4308	broad.mit.edu	37	chr15	31359918	31359918	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttttttaagagtcatatCaaagtaaaaaacacaagcta	4	5	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31359918	G	G	31359918	1	3	43	0	1	0	0	0	0	0	0	0	16710	841	29	4		4	TRPM1	15	31359918	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	65968	31359918	71171474	499	49337											
MEIS2	4212	broad.mit.edu	37	chr15	37184499	37184499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccgtgcatcatcatggCtgggtggtggggatggcttg	16	9	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37184499	A	A	37184499	3	1	43	1	0	0	0	0	1	0	0	0	9561	797	28	3	128	3	MEIS2	15	37184499	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5824581	37184499	65346893	500	49338											
PAK6	56924	broad.mit.edu	37	chr15	40566420	40566420	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttcagtgactccccagtGcaagccatgaagaggctccg	10	13	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40566420	A	A	40566420	2	1	43	1	0	0	0	0	0	0	0	1	11498	1306	46	4		4	PAK6	15	40566420	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3381921	40566420	61964972	501	49339											
SEMA6D	80031	broad.mit.edu	37	chr15	48057357	48057357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaattagcagtggtttgGcataatagtgttttgtgttt	10	3	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48057357	T	T	48057357	1	4	43	0	1	0	0	0	0	0	0	0	14155	1218	42	3		3	SEMA6D	15	48057357	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	7490937	48057357	54474035	502	49340											
STRA6	64220	broad.mit.edu	37	chr15	74472367	74472367	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggggagggaggaggatggTaggcaggaacatgcctcagc	19	8	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74472367	C	C	74472367	1	2	43	0	1	0	0	0	0	0	0	0	15440	1653	57	5		5	STRA6	15	74472367	3'UTR	SNP	T	TCGA-17-Z010-01A-01W-0746-08	26415010	74472367	28059025	503	49341											
FSD2	123722	broad.mit.edu	37	chr15	83440922	83440922	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tataagctccagcacactcgGactgaggaacctgtggctga	11	11	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83440922	T	T	83440922	2	4	43	1	0	0	0	0	0	0	0	1	6131	1161	41	3		3	FSD2	15	83440922	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	8968555	83440922	19090470	504	49342											
HOMER2	9455	broad.mit.edu	37	chr15	83586584	83586584	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaaattatatcacatgTgcccagcaaggcaaaactca	5	10	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83586584	A	A	83586584	1	1	43	0	1	0	0	0	0	0	0	0	7346	1711	59	5		5	HOMER2	15	83586584	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	145662	83586584	18944808	505	49343											
RHCG	51458	broad.mit.edu	37	chr15	90020313	90020313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagccattcctgctcacCcacaatgatgccacccatca	5	18	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90020313	A	A	90020313	3	1	43	1	0	0	0	0	1	0	0	0	13435	637	22	2	214	2	RHCG	15	90020313	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	6433729	90020313	12511079	506	49344											
UNC45A	55898	broad.mit.edu	37	chr15	91479448	91479448	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctttcctcgagatctTtccctactgctcttgcctgg	8	15	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91479448	C	C	91479448	1	2	43	0	1	0	0	0	0	0	0	0	17114	1856	64	5		5	UNC45A	15	91479448	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1459135	91479448	11051944	507	49345											
ADAMTS17	170691	broad.mit.edu	37	chr15	100692722	100692722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtatgtgcctgtgctgaGtgtgaatgcccatgtcctcc	12	10	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100692722	T	T	100692722	1	4	43	0	1	0	0	0	0	0	0	0	262	1044	36	3		3	ADAMTS17	15	100692722	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	9213274	100692722	1838670	508	49346											
LASS3	204219	broad.mit.edu	37	chr15	101024601	101024601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtggaggaagcagagaaGgcaaatatgtgaggagccta	17	4	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101024601	T	T	101024601	1	4	43	0	1	0	0	0	0	0	0	0	8712	1015	35	2		2	LASS3	15	101024601	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	331879	101024601	1506791	509	49347											
LRRK1	79705	broad.mit.edu	37	chr15	101566135	101566135	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcccttgttccatgaacaGagacagtactcagccgtggg	11	11	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101566135	C	C	101566135	1	2	43	0	1	0	0	0	0	0	0	0	9119	957	33	4		4	LRRK1	15	101566135	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	541534	101566135	965257	510	49348											
SRRM2	23524	broad.mit.edu	37	chr16	2816129	2816129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggaaacgctctagatctcGagcctctccagccactcacc	8	16	4	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2816129	T	T	2816129	3	4	43	1	0	0	0	0	1	0	0	0	15287	1058	37	3	5638	3	SRRM2	16	2816129	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08		2816129	87538624	511	49349											
ERCC4	2072	broad.mit.edu	37	chr16	14027985	14027985	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttatctgttgttttaaaaGcctttggaagactttatggg	10	4	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14027985	A	A	14027985	1	1	43	0	1	0	0	0	0	0	0	0	5257	986	34	4		4	ERCC4	16	14027985	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	11211856	14027985	76326768	512	49350											
ACSM5	54988	broad.mit.edu	37	chr16	20435268	20435268	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccttgaccgaatctgacatCttctggaacacgactgacac	8	13	3	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20435268	T	T	20435268	2	4	43	1	0	0	0	0	0	0	0	1	187	903	32	4		4	ACSM5	16	20435268	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	6407283	20435268	69919485	513	49351											
ACSM5	54988	broad.mit.edu	37	chr16	20451031	20451031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactttcatggtgcaaagGtaaatgtaggcacttattca	9	6	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20451031	T	T	20451031	1	4	43	0	1	0	0	0	0	0	0	0	187	1276	44	3		3	ACSM5	16	20451031	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	15763	20451031	69903722	514	49352											
DNAH3	55567	broad.mit.edu	37	chr16	21035953	21035953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgagactggagggcaGggtgtccatgtaggaatcct	16	7	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21035953	T	T	21035953	3	4	43	1	0	0	0	0	1	0	0	0	4643	991	35	2	6834	2	DNAH3	16	21035953	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	584922	21035953	69318800	515	49353											
OTOA	146183	broad.mit.edu	37	chr16	21771800	21771800	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttttaggagctctccAgtcgtggggtctttggcttg	13	8	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21771800	T	T	21771800	3	4	43	1	0	0	0	0	1	0	0	0	11396	188	7	5	3515	5	OTOA	16	21771800	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	735847	21771800	68582953	516	49354											
GSG1L	146395	broad.mit.edu	37	chr16	27840244	27840244	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcgtggtgacagaggcTgccatgcagcaggtaaagga	16	7	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27840244	A	A	27840244	2	1	43	1	0	0	0	0	0	0	0	1	6887	1567	55	5		5	GSG1L	16	27840244	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	6068444	27840244	62514509	517	49355											
TBC1D10B	26000	broad.mit.edu	37	chr16	30380611	30380611	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtcttgcgcagggccagCccgtttatctctgaatctga	10	13	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30380611	A	A	30380611	2	1	43	1	0	0	0	0	0	0	0	1	15718	726	26	3		3	TBC1D10B	16	30380611	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2540367	30380611	59974142	518	49356											
PHKB	5257	broad.mit.edu	37	chr16	47621563	47621563	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaatttaggaaatgtttttCtttttctctgtccagggctg	8	6	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47621563	G	G	47621563	1	3	43	0	1	0	0	0	0	0	0	0	11940	928	32	4		4	PHKB	16	47621563	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	17240952	47621563	42733190	519	49357											
SALL1	6299	broad.mit.edu	37	chr16	51171412	51171412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccatccacagagagccGccgaccccgtcgtgcagggg	16	15	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51171412	T	T	51171412	2	4	43	1	0	0	0	0	0	0	0	1	13921	1086	38	3		3	SALL1	16	51171412	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3549849	51171412	39183341	520	49358											
MT1E	4493	broad.mit.edu	37	chr16	56660466	56660466	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtgcggggccatctccagGaatctggggctgtggctcag	17	10	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56660466	A	A	56660466	1	1	43	0	1	0	0	0	0	0	0	0	9993	1189	41	4		4	MT1E	16	56660466	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5489054	56660466	33694287	521	49359											
CNGB1	1258	broad.mit.edu	37	chr16	57996799	57996799	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagggacagacagacagaCatgggcagggagcccaaggg	17	10	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57996799	T	T	57996799	1	4	43	0	1	0	0	0	0	0	0	0	3632	493	17	4		4	CNGB1	16	57996799	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1336333	57996799	32357954	522	49360											
FTSJD1	55783	broad.mit.edu	37	chr16	71318329	71318329	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctttggcagtttctttcCctccaaaatatgccataagt	5	11	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71318329	A	A	71318329	4	1	43	1	0	0	0	0	0	1	0	0	6150	632	22	2	821	2	FTSJD1	16	71318329	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	13321530	71318329	19036424	523	49361											
DHX38	9785	broad.mit.edu	37	chr16	72131547	72131547	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccttaggatgggatgcatGtttttaagcttcgtgtgact	11	6	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72131547	A	A	72131547	1	1	43	0	1	0	0	0	0	0	0	0	4551	1392	48	4		4	DHX38	16	72131547	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	813218	72131547	18223206	524	49362											
DHX38	9785	broad.mit.edu	37	chr16	72137103	72137103	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcaggagctgctcactAttatcaggtaacttcacccg	9	12	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72137103	G	G	72137103	3	3	43	1	0	0	0	0	1	0	0	0	4551	449	16	5	1672	5	DHX38	16	72137103	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	5556	72137103	18217650	525	49363											
C17orf87	388325	broad.mit.edu	37	chr17	5126577	5126577	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaggagctctactgcacCgataaccacctggctcctcc	7	16	1	0	rs140910174	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5126577	T	T	5126577	1	4	43	0	1	0	0	0	0	0	0	0	1906	667	23	4		4	C17orf87	17	5126577	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08		5126577	76068633	526	49364											
MYH13	8735	broad.mit.edu	37	chr17	10206700	10206701	+	Intron	DNP	GG	TT	TT													cattcactgaggaggtttttGggacccctacctggtaagtc							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10206701	TT	TT	10206700	1	4	43	0	1	0	0	0	0	0	0	0	10126	1363	47	2		2	MYH13	17	10206700	Intron	DNP	GG	TCGA-17-Z010-01A-01W-0746-08	5080123	10206700	70988510	527	49365											
MYH13	8735	broad.mit.edu	37	chr17	10248693	10248693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccaggctgttgaactgGgtgattcaaataccaaagaa	10	8	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10248693	T	T	10248693	1	4	43	0	1	0	0	0	0	0	0	0	10126	1247	43	2		2	MYH13	17	10248693	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	41993	10248693	70946517	528	49366											
MYH8	4626	broad.mit.edu	37	chr17	10317454	10317454	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaccacacctacagtagttTgctattgtcatttccataca	4	11	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10317454	C	C	10317454	1	2	43	0	1	0	0	0	0	0	0	0	10135	1827	63	5		5	MYH8	17	10317454	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	68761	10317454	70877756	529	49367											
MYH1	4619	broad.mit.edu	37	chr17	10397987	10397987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacttcaccttcaagttcacGaacctacaagaagatggaca	6	11	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10397987	T	T	10397987	3	4	43	1	0	0	0	0	1	0	0	0	10123	1058	37	3	361	3	MYH1	17	10397987	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	80533	10397987	70797223	530	49368											
MYH3	4621	broad.mit.edu	37	chr17	10542491	10542491	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcggagcttcttttcttgttCtagggagctttccagctgaa	10	9	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10542491	T	T	10542491	3	4	43	1	0	0	0	0	1	0	0	0	10130	922	32	4	2772	4	MYH3	17	10542491	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	144504	10542491	70652719	531	49369											
DNAH9	1770	broad.mit.edu	37	chr17	11784564	11784564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaatgtgaatacaatcCcaagttccggctcatcctcc	6	13	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11784564	A	A	11784564	3	1	43	1	0	0	0	0	1	0	0	0	4648	623	22	2	10858	2	DNAH9	17	11784564	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1242073	11784564	69410646	532	49370											
MYOCD	93649	broad.mit.edu	37	chr17	12666882	12666882	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaccaccagcagccccaGcatcttcaacatcgatttcc	4	19	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12666882	A	A	12666882	3	1	43	1	0	0	0	0	1	0	0	0	10181	971	34	4	2948	4	MYOCD	17	12666882	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	882318	12666882	68528328	533	49371											
SLC47A1	55244	broad.mit.edu	37	chr17	19445804	19445804	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgcagtcacgctggcaatCgcggtacgtgtgggctttct	14	10	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19445804	A	A	19445804	2	1	43	1	0	0	0	0	0	0	0	1	14761	874	31	3		3	SLC47A1	17	19445804	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	6778922	19445804	61749406	534	49372											
GPR179	440435	broad.mit.edu	37	chr17	36485475	36485475	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacagacctcctcgatcgGcactctcccagggacacact	10	16	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36485475	A	A	36485475	3	1	43	1	0	0	0	0	1	0	0	0	6739	1203	42	4	3130	4	GPR179	17	36485475	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	17039671	36485475	44709735	535	49373											
TNS4	84951	broad.mit.edu	37	chr17	38633803	38633803	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggctccttagcgagcccCtggaggtgttggttaggtgc	18	9	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38633803	A	A	38633803	1	1	43	0	1	0	0	0	0	0	0	0	16468	696	24	2		2	TNS4	17	38633803	3'UTR	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2148328	38633803	42561407	536	49374											
KRT23	25984	broad.mit.edu	37	chr17	39081682	39081682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttgatgcccagcagcaCttggtattcattgttctgcc	10	10	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39081682	A	A	39081682	3	1	43	1	0	0	0	0	1	0	0	0	8531	565	20	3	214	3	KRT23	17	39081682	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	447879	39081682	42113528	537	49375											
KRTAP9-8	83901	broad.mit.edu	37	chr17	39394360	39394360	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgcaggaccacctgctgGaagcccaccactgtgaccac	10	16	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39394360	A	A	39394360	4	1	43	1	0	0	0	0	0	1	0	0	8648	1183	41	4	59	4	KRTAP9-8	17	39394360	Nonsense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	312678	39394360	41800850	538	49376											
BRCA1	672	broad.mit.edu	37	chr17	41243327	41243327	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttaggaggaacatgtttCaagtttaagaagcagttcct	9	7	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41243327	T	T	41243327	1	4	43	0	1	0	0	0	0	0	0	0	1507	841	29	4		4	BRCA1	17	41243327	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1848967	41243327	39951883	539	49377											
SLC4A1	6521	broad.mit.edu	37	chr17	42338214	42338214	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcgcctgagttagttcatCaggcatagtccagggcatag	12	9	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42338214	G	G	42338214	1	3	43	0	1	0	0	0	0	0	0	0	14764	841	29	4		4	SLC4A1	17	42338214	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1094887	42338214	38856996	540	49378											
CALCOCO2	10241	broad.mit.edu	37	chr17	46929831	46929831	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgttttgttttccttcTtttatatcttggttatgttc	5	7	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46929831	C	C	46929831	1	2	43	0	1	0	0	0	0	0	0	0	2604	1624	56	5		5	CALCOCO2	17	46929831	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	4591617	46929831	34265379	541	49379											
STXBP4	252983	broad.mit.edu	37	chr17	53218848	53218848	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttacaaaaattagtaacaAgaaatgaagcctcaccattt	6	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53218848	G	G	53218848	1	3	43	0	1	0	0	0	0	0	0	0	15473	87	3	5		5	STXBP4	17	53218848	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	6289017	53218848	27976362	542	49380											
PRR11	55771	broad.mit.edu	37	chr17	57256883	57256883	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcatgagtgatcacttctGagtcctcccgcatggagagc	10	13	3	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57256883	C	C	57256883	1	2	43	0	1	0	0	0	0	0	0	0	12689	1305	45	4		4	PRR11	17	57256883	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4038035	57256883	23938327	543	49381											
CLTC	1213	broad.mit.edu	37	chr17	57758212	57758212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttttctaatgagaggccaActtacgcttttttaaaacca	6	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57758212	G	G	57758212	1	3	43	0	1	0	0	0	0	0	0	0	3598	58	2	5		5	CLTC	17	57758212	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	501329	57758212	23436998	544	49382											
HEATR6	63897	broad.mit.edu	37	chr17	58133654	58133654	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagtgcaaggctgcaatatCcagaaaagtgttacaatatt	9	6	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58133654	A	A	58133654	1	1	43	0	1	0	0	0	0	0	0	0	7100	870	30	3		3	HEATR6	17	58133654	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	375442	58133654	23061556	545	49383											
SCN4A	6329	broad.mit.edu	37	chr17	62022909	62022909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcaaacaggttgacaccCatgatgctgaagatcagcca	10	12	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62022909	A	A	62022909	3	1	43	1	0	0	0	0	1	0	0	0	14033	594	21	2	2003	2	SCN4A	17	62022909	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3889255	62022909	19172301	546	49384											
ERN1	2081	broad.mit.edu	37	chr17	62126570	62126570	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaccgtgtaggtctgaaaaGagacatgaggcgtgagaggt	15	7	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62126570	C	C	62126570	1	2	43	0	1	0	0	0	0	0	0	0	5279	957	33	4		4	ERN1	17	62126570	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	103661	62126570	19068640	547	49385											
ABCA10	10349	broad.mit.edu	37	chr17	67225857	67225860	+	Intron	DEL	TTAA	-	-													aacaacaaaggaagcatactTtaattgctttcctttgttgt							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67225860	-	-	67225857	6	5	43	0	1	1	0	1	0	0	0	0	29	1856	64	0		0	ABCA10	17	67225857	Intron	DEL	TTAA	TCGA-17-Z010-01A-01W-0746-08	5099287	67225857	13969353	548	49386											
SLC39A11	201266	broad.mit.edu	37	chr17	70756780	70756780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaccatttaaaggacaCcttggtgtatcaacggggtt	12	7	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70756780	A	A	70756780	1	1	43	0	1	0	0	0	0	0	0	0	14728	522	18	3		3	SLC39A11	17	70756780	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3530923	70756780	10438430	549	49387											
RNF157	114804	broad.mit.edu	37	chr17	74151342	74151342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggggttacctctgcatcCtgctctccagctgggaggcc	13	13	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74151342	A	A	74151342	3	1	43	1	0	0	0	0	1	0	0	0	13565	680	24	2	300	2	RNF157	17	74151342	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3394562	74151342	7043868	550	49388											
GAA	2548	broad.mit.edu	37	chr17	78091366	78091366	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatgggggcctcggcacgGcccagaatcctcaaagcaac	12	14	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78091366	A	A	78091366	1	1	43	0	1	0	0	0	0	0	0	0	6207	1218	42	4		4	GAA	17	78091366	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3940024	78091366	3103844	551	49389											
LPIN2	9663	broad.mit.edu	37	chr18	2940579	2940579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcctctttcaagaaaCcaagaaatttcaaagatact	3	11	3	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2940579	T	T	2940579	1	4	43	0	1	0	0	0	0	0	0	0	9006	522	18	4		4	LPIN2	18	2940579	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08		2940579	75136669	552	49390											
DLGAP1	9229	broad.mit.edu	37	chr18	3534474	3534474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactgtggaggtgctggcatCgcgggagaactgtctggcca	17	9	1	1	rs150743119		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3534474	A	A	3534474	3	1	43	1	0	0	0	0	1	0	0	0	4599	884	31	3	752	3	DLGAP1	18	3534474	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	593895	3534474	74542774	553	49391											
L3MBTL4	91133	broad.mit.edu	37	chr18	6244450	6244450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatctttctgtcactaggCaattagcccaagacagtaac	6	10	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6244450	A	A	6244450	1	1	43	0	1	0	0	0	0	0	0	0	8666	725	25	3		3	L3MBTL4	18	6244450	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2709976	6244450	71832798	554	49392											
LAMA1	284217	broad.mit.edu	37	chr18	6950810	6950810	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgccatcactgagcagtgCagggtgagagacctttgttc	12	10	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6950810	G	G	6950810	3	3	43	1	0	0	0	0	1	0	0	0	8677	710	25	4	883	4	LAMA1	18	6950810	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	706360	6950810	71126438	555	49393											
FAM38B	63895	broad.mit.edu	37	chr18	10677895	10677895	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagaaaaaaaaaaagctTaatgtcagtgattattcaga	8	3	2	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10677895	A	A	10677895	1	1	43	0	1	0	0	0	0	0	0	0	5606	1769	61	5		5	FAM38B	18	10677895	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	3727085	10677895	67399353	556	49394											
C18orf1	753	broad.mit.edu	37	chr18	13621000	13621000	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtcctgctggcctctgagGaacagacgtgtgtgagaggc	16	9	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13621000	T	T	13621000	1	4	43	0	1	0	0	0	0	0	0	0	1912	1189	41	3		3	C18orf1	18	13621000	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2943105	13621000	64456248	557	49395											
OSBPL1A	114876	broad.mit.edu	37	chr18	21747287	21747288	+	Intron	DNP	TC	AA	AA													gccacagccagcaagcccagTctcacctgggcagaatttgg							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21747288	AA	AA	21747287	1	1	43	0	1	0	0	0	0	0	0	0	11371	1682	58	5		5	OSBPL1A	18	21747287	Intron	DNP	TC	TCGA-17-Z010-01A-01W-0746-08	8126287	21747287	56329961	558	49396											
FHOD3	80206	broad.mit.edu	37	chr18	34261339	34261339	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaaggtctgactggtgctTacttcagtacttttaatcac	7	10	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34261339	A	A	34261339	1	1	43	0	1	0	0	0	0	0	0	0	5940	1769	61	5		5	FHOD3	18	34261339	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	12514052	34261339	43815909	559	49397											
RNF165	494470	broad.mit.edu	37	chr18	44036340	44036340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgaaagcgcttcctggCggaggcttcatggtttccca	12	11	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44036340	A	A	44036340	1	1	43	0	1	0	0	0	0	0	0	0	13567	783	27	3		3	RNF165	18	44036340	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	9775001	44036340	34040908	560	49398											
KATNAL2	83473	broad.mit.edu	37	chr18	44543260	44543260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggtacggctgatcgggcGtccacccttccagaacgggt	14	13	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44543260	T	T	44543260	1	4	43	0	1	0	0	0	0	0	0	0	8056	1145	40	3		3	KATNAL2	18	44543260	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	506920	44543260	33533988	561	49399											
CD226	10666	broad.mit.edu	37	chr18	67614469	67614469	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattggaaaatgtaactttTagtttttctgaacaagtgag	8	3	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67614469	C	C	67614469	1	2	43	0	1	0	0	0	0	0	0	0	3016	1769	61	5		5	CD226	18	67614469	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	23071209	67614469	10462779	562	49400											
RTTN	25914	broad.mit.edu	37	chr18	67809534	67809534	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagacattaccttgcataatCacagctaactgttcagcagc	6	11	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67809534	A	A	67809534	2	1	43	1	0	0	0	0	0	0	0	1	13848	813	29	3		3	RTTN	18	67809534	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	195065	67809534	10267714	563	49401											
NETO1	81832	broad.mit.edu	37	chr18	70423255	70423255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttttttcaaatttcagGcactaatcattacctttaca	2	8	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70423255	T	T	70423255	1	4	43	0	1	0	0	0	0	0	0	0	10434	1218	42	3		3	NETO1	18	70423255	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2613721	70423255	7653993	564	49402											
PLIN4	729359	broad.mit.edu	37	chr19	4512253	4512253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggccacattcgctgccccCgtgagcccagtggacatcgt	11	15	0	1	rs113773915	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4512253	A	A	4512253	2	1	43	1	0	0	0	0	0	0	0	1	12187	639	23	1		1	PLIN4	19	4512253	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08		4512253	54616730	565	49403											
ACER1	125981	broad.mit.edu	37	chr19	6307196	6307196	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatagaagaaatgaatcctCtgccagaagctgcaaagcag	10	8	1	5			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6307196	T	T	6307196	2	4	43	1	0	0	0	0	0	0	0	1	138	912	32	4		4	ACER1	19	6307196	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1794943	6307196	52821787	566	49404											
VAV1	7409	broad.mit.edu	37	chr19	6850673	6850673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggcccggtgaccatctGgttccagatataacgtcgag	12	11	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6850673	T	T	6850673	1	4	43	0	1	0	0	0	0	0	0	0	17258	1363	47	2		2	VAV1	19	6850673	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	543477	6850673	52278310	567	49405											
FBN3	84467	broad.mit.edu	37	chr19	8137954	8137954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctctcacccttgccCagcccggaagtagccttgag	9	17	1	1	rs140397273		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8137954	A	A	8137954	3	1	43	1	0	0	0	0	1	0	0	0	5761	594	21	2	511	2	FBN3	19	8137954	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1287281	8137954	50991029	568	49406											
MUC16	94025	broad.mit.edu	37	chr19	9009970	9009970	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttatctttattattgccatCatcatcattgctatcattgt	4	8	5	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009970	A	A	9009970	1	1	43	0	1	0	0	0	0	0	0	0	10067	841	29	3		3	MUC16	19	9009970	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	872016	9009970	50119013	569	49407											
MUC16	94025	broad.mit.edu	37	chr19	9010703	9010703	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccaaggtccactgtggaGgtcccaggagctgaggaaaa	14	10	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9010703	T	T	9010703	2	4	43	1	0	0	0	0	0	0	0	1	10067	987	35	2		2	MUC16	19	9010703	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	733	9010703	50118280	570	49408											
ZNF317	57693	broad.mit.edu	37	chr19	9271573	9271573	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcacatcgtcaagaaacccGtggaatgtcggcagtgcggg	13	10	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9271573	A	A	9271573	3	1	43	1	0	0	0	0	1	0	0	0	17961	1145	40	4	1274	4	ZNF317	19	9271573	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	260870	9271573	49857410	571	49409											
COL5A3	50509	broad.mit.edu	37	chr19	10077014	10077014	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaacttcttgtcgggataGaggcaggtctctcctcccgc	10	13	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10077014	A	A	10077014	2	1	43	1	0	0	0	0	0	0	0	1	3730	929	33	4		4	COL5A3	19	10077014	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	805441	10077014	49051969	572	49410											
PDE4A	5141	broad.mit.edu	37	chr19	10578066	10578066	+	Frame_Shift_Del	DEL	C	-	-													gttgctgtaagccacagcagCccctctgccctggctcttca							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10578066	-	-	10578066	7	5	43	1	0	1	0	1	0	0	0	0	11733	738	26	0	2945	0	PDE4A	19	10578066	Frame_Shift_Del	DEL	C	TCGA-17-Z010-01A-01W-0746-08	501052	10578066	48550917	573	49411											
AP1M2	10053	broad.mit.edu	37	chr19	10692546	10692546	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagctccttgaagtattcGcagaatacctgggggttgga	12	9	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10692546	A	A	10692546	2	1	43	1	0	0	0	0	0	0	0	1	737	1079	38	4		4	AP1M2	19	10692546	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	114480	10692546	48436437	574	49412											
GCDH	2639	broad.mit.edu	37	chr19	13002761	13002761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaggagagactcatgcctCgcatcctgttggccaatcgc	11	14	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13002761	T	T	13002761	3	4	43	1	0	0	0	0	1	0	0	0	6349	884	31	4	254	4	GCDH	19	13002761	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2310215	13002761	46126222	575	49413											
OR10H1	26539	broad.mit.edu	37	chr19	15918412	15918412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccagcccaggagcagcCcaccaggcaggcgcagcccc	12	20	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15918412	A	A	15918412	3	1	43	1	0	0	0	0	1	0	0	0	10999	623	22	2	524	2	OR10H1	19	15918412	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2915651	15918412	43210571	576	49414											
USHBP1	83878	broad.mit.edu	37	chr19	17370486	17370486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagacccaaggatctggGtgctggaatggctgcggagg	18	7	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17370486	T	T	17370486	3	4	43	1	0	0	0	0	1	0	0	0	17163	1261	44	3	1319	3	USHBP1	19	17370486	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1452074	17370486	41758497	577	49415											
UNC13A	23025	broad.mit.edu	37	chr19	17785597	17785597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtaggggtcagcgctggGgctcagggactctccaatgc	16	10	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17785597	T	T	17785597	1	4	43	0	1	0	0	0	0	0	0	0	17110	1247	43	2		2	UNC13A	19	17785597	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	415111	17785597	41343386	578	49416											
SF4	57794	broad.mit.edu	37	chr19	19413247	19413247	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcaccacacccaacagccTaatttctgctaagaacccca	3	17	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19413247	A	A	19413247	1	1	43	0	1	0	0	0	0	0	0	0	14268	1537	53	5		5	SF4	19	19413247	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1627650	19413247	39715736	579	49417											
ZNF257	113835	broad.mit.edu	37	chr19	22256493	22256493	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatatagtttctggaagcctGagtttgcattttttttttct	8	5	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22256493	T	T	22256493	1	4	43	0	1	0	0	0	0	0	0	0	17926	1305	45	3		3	ZNF257	19	22256493	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2843246	22256493	36872490	580	49418											
ZNF91	7644	broad.mit.edu	37	chr19	23567627	23567627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgttcacagaaacaccCtcctcagtggtcaaaaatac	6	12	4	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23567627	A	A	23567627	1	1	43	0	1	0	0	0	0	0	0	0	18329	696	24	2		2	ZNF91	19	23567627	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1311134	23567627	35561356	581	49419											
TSHZ3	57616	broad.mit.edu	37	chr19	31768401	31768401	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttggactgcaggggcggCggggtggccacagcagcctt	17	11	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768401	T	T	31768401	2	4	43	1	0	0	0	0	0	0	0	1	16750	755	27	4		4	TSHZ3	19	31768401	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8200774	31768401	27360582	582	49420											
TSHZ3	57616	broad.mit.edu	37	chr19	31769734	31769734	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagctccagggaagctttcTtccgagtggcagggatgatt	13	10	1	1	rs146913156		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31769734	C	C	31769734	3	2	43	1	0	0	0	0	1	0	0	0	16750	1609	56	5	2284	5	TSHZ3	19	31769734	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1333	31769734	27359249	583	49421											
TSHZ3	57616	broad.mit.edu	37	chr19	31778523	31778523	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatgggagaggaagagaaGaatccactagggctggcgta	17	5	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31778523	T	T	31778523	1	4	43	0	1	0	0	0	0	0	0	0	16750	957	33	3		3	TSHZ3	19	31778523	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	8789	31778523	27350460	584	49422											
UBA2	10054	broad.mit.edu	37	chr19	34929516	34929516	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttgagaaactgccatcaTggagtaaatttttctcatat	7	6	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34929516	C	C	34929516	1	2	43	0	1	0	0	0	0	0	0	0	16954	1479	51	5		5	UBA2	19	34929516	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	3150993	34929516	24199467	585	49423											
FAM187B	148109	broad.mit.edu	37	chr19	35718770	35718770	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actacgtggctgaactgcaaAgaacgcccactcatccctct	7	15	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35718770	T	T	35718770	1	4	43	0	1	0	0	0	0	0	0	0	5559	87	3	5		5	FAM187B	19	35718770	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	789254	35718770	23410213	586	49424											
ZNF569	148266	broad.mit.edu	37	chr19	37905272	37905272	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatttaacttcaacttgtctCaaaagtctgtcctggttttt	5	8	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37905272	G	G	37905272	3	3	43	1	0	0	0	0	1	0	0	0	18127	825	29	4	1776	4	ZNF569	19	37905272	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2186502	37905272	21223711	587	49425											
ZNF573	126231	broad.mit.edu	37	chr19	38294399	38294399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaacttactatacatcatAgatttcatactggggagaaa	6	7	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38294399	T	T	38294399	1	4	43	0	1	0	0	0	0	0	0	0	18132	435	15	5		5	ZNF573	19	38294399	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	389127	38294399	20834584	588	49426											
RYR1	6261	broad.mit.edu	37	chr19	38934654	38934654	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaacggggaactgttaGgcagagagttggtggcagtg	18	5	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38934654	A	A	38934654	1	1	43	0	1	0	0	0	0	0	0	0	13879	1015	35	4		4	RYR1	19	38934654	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	640255	38934654	20194329	589	49427											
RYR1	6261	broad.mit.edu	37	chr19	38976703	38976703	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctcagccctgccatccCgctggaggccctgcgggaca	12	19	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38976703	T	T	38976703	3	4	43	1	0	0	0	0	1	0	0	0	13879	652	23	4	5542	4	RYR1	19	38976703	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	42049	38976703	20152280	590	49428											
RYR1	6261	broad.mit.edu	37	chr19	39014637	39014637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcccccagcctctgcacGcccccgcctcgagaaaaccc	6	22	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39014637	T	T	39014637	1	4	43	0	1	0	0	0	0	0	0	0	13879	1102	38	3		3	RYR1	19	39014637	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	37934	39014637	20114346	591	49429											
ZNF780B	163131	broad.mit.edu	37	chr19	40556394	40556394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaactactcctgctcacaCgcacacttccacccttctcc	2	21	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40556394	A	A	40556394	1	1	43	0	1	0	0	0	0	0	0	0	18282	551	19	3		3	ZNF780B	19	40556394	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1541757	40556394	18572589	592	49430											
CYP2F1	1572	broad.mit.edu	37	chr19	42006575	42006575	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttatttttgtaaattcaAttgttttgttcccggaggaa	7	5	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42006575	G	G	42006575	1	3	43	0	1	0	0	0	0	0	0	0	4204	116	4	5		5	CYP2F1	19	42006575	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1450181	42006575	17122408	593	49431											
PSG7	5676	broad.mit.edu	37	chr19	43441241	43441241	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccatggtctctgctccCtgcgtgttctcctctgtgga	11	15	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43441241	A	A	43441241	1	1	43	1	0	0	0	0	0	0	0	0	12766	696	24	2		2	PSG7	19	43441241	Translation_Start_Site	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1434666	43441241	15687742	594	49432											
PSG5	5673	broad.mit.edu	37	chr19	43674435	43674435	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgggaaattgatgggagatGattatattcttgcagttttt	11	2	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43674435	T	T	43674435	1	4	43	0	1	0	0	0	0	0	0	0	12764	1305	45	3		3	PSG5	19	43674435	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	233194	43674435	15454548	595	49433											
PSG4	5672	broad.mit.edu	37	chr19	43699029	43699029	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagggagtcatggccacctCggatgtccagaagtaaaggt	14	9	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43699029	T	T	43699029	1	4	43	0	1	0	0	0	0	0	0	0	12763	899	31	4		4	PSG4	19	43699029	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	24594	43699029	15429954	596	49434											
CD177	57126	broad.mit.edu	37	chr19	43858045	43858045	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtttgggacagttcagcaTgtgtggaaggtgtccgacct	14	8	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43858045	A	A	43858045	3	1	43	1	0	0	0	0	1	0	0	0	3001	1461	51	5	99	5	CD177	19	43858045	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	159016	43858045	15270938	597	49435											
ETHE1	23474	broad.mit.edu	37	chr19	44011414	44011414	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcccctcctccctcagacTcaggagttcagacccccagc	7	20	3	2	rs140931919	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44011414	C	C	44011414	1	2	43	0	1	0	0	0	0	0	0	0	5314	1566	54	5		5	ETHE1	19	44011414	Intron	SNP	T	TCGA-17-Z010-01A-01W-0746-08	153369	44011414	15117569	598	49436											
ZNF180	7733	broad.mit.edu	37	chr19	44981416	44981416	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccccagtatgagttctttGatgcacaacaaggacataac	7	11	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44981416	T	T	44981416	3	4	43	1	0	0	0	0	1	0	0	0	17874	1299	45	3	800	3	ZNF180	19	44981416	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	970002	44981416	14147567	599	49437											
ZC3H4	23211	broad.mit.edu	37	chr19	47584916	47584916	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtaaatgcttcatctcacaGaacgcccccctcccccacca	5	19	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47584916	A	A	47584916	1	1	43	0	1	0	0	0	0	0	0	0	17696	957	33	4		4	ZC3H4	19	47584916	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2603500	47584916	11544067	600	49438											
C19orf41	126123	broad.mit.edu	37	chr19	50655823	50655823	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggatttgtcaccaatttTattaaatttattttcctttc	4	6	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50655823	C	C	50655823	1	2	43	0	1	0	0	0	0	0	0	0	1943	1769	61	5		5	C19orf41	19	50655823	3'UTR	SNP	T	TCGA-17-Z010-01A-01W-0746-08	3070907	50655823	8473160	601	49439											
SIGLEC5	8778	broad.mit.edu	37	chr19	52115380	52115380	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacatcagttaatgttaacAttgccacaagggctcttcgt	7	9	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52115380	G	G	52115380	1	3	43	0	1	0	0	0	0	0	0	0	14424	232	8	5		5	SIGLEC5	19	52115380	3'UTR	SNP	A	TCGA-17-Z010-01A-01W-0746-08	1459557	52115380	7013603	602	49440											
CACNG6	59285	broad.mit.edu	37	chr19	54496524	54496524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagggagggagaggggccCgtgtccgaggagaaaacccg	19	9	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54496524	A	A	54496524	1	1	43	0	1	0	0	0	0	0	0	0	2587	667	23	1		1	CACNG6	19	54496524	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2381144	54496524	4632459	603	49441											
LILRB2	10288	broad.mit.edu	37	chr19	54783978	54783978	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtcatttcccacccaacaGatctcagctctcagcccagg	6	16	3	1	rs148054407	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54783978	T	T	54783978	1	4	43	0	1	0	0	0	0	0	0	0	8863	957	33	3		3	LILRB2	19	54783978	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	287454	54783978	4345005	604	49442											
NLRP7	199713	broad.mit.edu	37	chr19	55451547	55451547	+	Frame_Shift_Del	DEL	C	-	-													ggggcccatgcggctgagctCcttgcagctgaggtagaacg							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55451547	-	-	55451547	7	5	43	1	0	1	0	1	0	0	0	0	10577	864	30	0	2505	0	NLRP7	19	55451547	Frame_Shift_Del	DEL	C	TCGA-17-Z010-01A-01W-0746-08	667569	55451547	3677436	605	49443											
PTPRH	5794	broad.mit.edu	37	chr19	55693324	55693324	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccaggtctgagctgcgtgGagccccagggtccctcgtcc	13	17	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55693324	A	A	55693324	1	1	43	0	1	0	0	0	0	0	0	0	12911	1189	41	4		4	PTPRH	19	55693324	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	241777	55693324	3435659	606	49444											
ZIM2	23619	broad.mit.edu	37	chr19	57290619	57290619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcagaaaggagaccaaGgggagtactgaggagaaagg	17	5	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57290619	T	T	57290619	1	4	43	0	1	0	0	0	0	0	0	0	17810	1015	35	2		2	ZIM2	19	57290619	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1597295	57290619	1838364	607	49445											
SIRPD	128646	broad.mit.edu	37	chr20	1538216	1538216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccacacacatacactgagGccccactcacctgccagttc	5	19	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1538216	T	T	1538216	1	4	43	0	1	0	0	0	0	0	0	0	14448	1218	42	3		3	SIRPD	20	1538216	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08		1538216	61487304	608	49446											
SIRPG	55423	broad.mit.edu	37	chr20	1616715	1616715	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacctaggtgcatggcgggcGggcagtatagtcagggatta	16	8	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1616715	C	C	1616715	1	2	43	0	1	0	0	0	0	0	0	0	14449	1131	39	4		4	SIRPG	20	1616715	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	78499	1616715	61408805	609	49447											
PROKR2	128674	broad.mit.edu	37	chr20	5295055	5295055	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgtgagggaggtgcgaGgggtgagggtccagaccttc	21	6	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5295055	T	T	5295055	1	4	43	0	1	0	0	0	0	0	0	0	12659	1015	35	2		2	PROKR2	20	5295055	5'Flank	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3678340	5295055	57730465	610	49448											
PLCB1	23236	broad.mit.edu	37	chr20	8721041	8721041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccagcctctgacgctgCctgctgtctttgtctacata	9	13	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8721041	A	A	8721041	3	1	43	1	0	0	0	0	1	0	0	0	12122	739	26	3	2445	3	PLCB1	20	8721041	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3425986	8721041	54304479	611	49449											
PLCB4	5332	broad.mit.edu	37	chr20	9434133	9434133	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atactgtttatttccttctgAagactttctctatgtttata	4	7	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9434133	T	T	9434133	1	4	43	0	1	0	0	0	0	0	0	0	12125	261	9	5		5	PLCB4	20	9434133	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	713092	9434133	53591387	612	49450											
BPIL3	128859	broad.mit.edu	37	chr20	31624305	31624305	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatgttctgatgtccgcacCagccaccacagccagctaca	7	15	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31624305	G	G	31624305	3	3	43	1	0	0	0	0	1	0	0	0	1502	594	21	4	658	4	BPIL3	20	31624305	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	22190172	31624305	31401215	613	49451											
CEP250	11190	broad.mit.edu	37	chr20	34061814	34061814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgcagggggactctgCccagggccagaaggaggaac	16	11	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34061814	G	G	34061814	3	3	43	1	0	0	0	0	1	0	0	0	3282	739	26	4	1550	4	CEP250	20	34061814	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2437509	34061814	28963706	614	49452											
KIAA1755	85449	broad.mit.edu	37	chr20	36870091	36870091	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgatggcctccagccattCttgggtgaaaagtatagggt	13	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36870091	A	A	36870091	4	1	43	1	0	0	0	0	0	1	0	0	8327	922	32	3	3208	3	KIAA1755	20	36870091	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2808277	36870091	26155429	615	49453											
PPP1R16B	26051	broad.mit.edu	37	chr20	37547336	37547336	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatggaggagggagatgCctggggaggggctcctggaa	21	5	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37547336	A	A	37547336	1	1	43	0	1	0	0	0	0	0	0	0	12467	754	26	3		3	PPP1R16B	20	37547336	3'UTR	SNP	C	TCGA-17-Z010-01A-01W-0746-08	677245	37547336	25478184	616	49454											
YWHAB	7529	broad.mit.edu	37	chr20	43533815	43533815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaccatagcaaaacagtGcttgtgttattaacttcatt	5	8	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43533815	T	T	43533815	1	4	43	0	1	0	0	0	0	0	0	0	17628	1334	46	3		3	YWHAB	20	43533815	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	5986479	43533815	19491705	617	49455											
PABPC1L	80336	broad.mit.edu	37	chr20	43552617	43552617	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatttgggatgtgggggctAcagcttgcatgtgatgggca	17	5	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43552617	G	G	43552617	1	3	43	0	1	0	0	0	0	0	0	0	11458	406	14	5		5	PABPC1L	20	43552617	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	18802	43552617	19472903	618	49456											
PABPC1L	80336	broad.mit.edu	37	chr20	43552706	43552706	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggctggtggggctccCcatgccccttgtacctgcgt	15	14	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43552706	T	T	43552706	1	4	43	0	1	0	0	0	0	0	0	0	11458	638	22	4		4	PABPC1L	20	43552706	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	89	43552706	19472814	619	49457											
WFDC9	259240	broad.mit.edu	37	chr20	44237242	44237242	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgcggtcttttgaatagtCggtaaggaccagtgatgaag	14	6	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44237242	A	A	44237242	1	1	43	0	1	0	0	0	0	0	0	0	17484	899	31	3		3	WFDC9	20	44237242	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	684536	44237242	18788278	620	49458											
TNNC2	7125	broad.mit.edu	37	chr20	44453377	44453377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctagaggccaacatgtccCcagcatacatccacccagcc	7	18	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44453377	A	A	44453377	1	1	43	0	1	0	0	0	0	0	0	0	16448	638	22	2		2	TNNC2	20	44453377	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	216135	44453377	18572143	621	49459											
MMP9	4318	broad.mit.edu	37	chr20	44641100	44641101	+	Missense_Mutation	DNP	CG	TT	TT													ctcgtggcggcgcatgagttCggccacgcgctgggcttaga							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44641101	TT	TT	44641100	3	4	43	1	0	0	0	0	1	0	0	0	9763	883	31	4	1239	4	MMP9	20	44641100	Missense_Mutation	DNP	CG	TCGA-17-Z010-01A-01W-0746-08	187723	44641100	18384420	622	49460											
CDH22	64405	broad.mit.edu	37	chr20	44845703	44845703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggagacccctgtacaGgcgggattcagaccctgtga	14	10	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44845703	T	T	44845703	1	4	43	0	1	0	0	0	0	0	0	0	3137	1015	35	2		2	CDH22	20	44845703	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	204603	44845703	18179817	623	49461											
PREX1	57580	broad.mit.edu	37	chr20	47350872	47350872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcatgagctgagtcgtGgtgacagaaactgtatggta	14	5	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47350872	T	T	47350872	1	4	43	0	1	0	0	0	0	0	0	0	12582	1363	47	2		2	PREX1	20	47350872	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2505169	47350872	15674648	624	49462											
C20orf85	128602	broad.mit.edu	37	chr20	56735866	56735866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgtgctggcccaagcaGggcgtgcactgaatccagac	14	12	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56735866	T	T	56735866	3	4	43	1	0	0	0	0	1	0	0	0	2142	991	35	2	416	2	C20orf85	20	56735866	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	9384994	56735866	6289654	625	49463											
PHACTR3	116154	broad.mit.edu	37	chr20	58342642	58342642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattagcttctgtgactgGggctcagggcaggcccagag	14	10	3	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58342642	T	T	58342642	1	4	43	0	1	0	0	0	0	0	0	0	11906	1247	43	2		2	PHACTR3	20	58342642	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1606776	58342642	4682878	626	49464											
TPTE	7179	broad.mit.edu	37	chr21	10934115	10934115	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttaggatcgtaagctcTttcacctaaaataaataata	6	7	2	0	rs149333450		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934115	A	A	10934115	4	1	43	1	0	0	0	0	0	1	0	0	16554	1617	56	5	829	5	TPTE	21	10934115	Nonsense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08		10934115	37195780	627	49465											
ADAMTS5	11096	broad.mit.edu	37	chr21	28302381	28302381	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcagtgccatcggtcacCtgaatcatggcaaatgcatt	8	11	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28302381	A	A	28302381	5	1	43	1	0	0	0	0	0	0	1	0	269	695	24	2	751	2	ADAMTS5	21	28302381	Splice_Site	SNP	C	TCGA-17-Z010-01A-01W-0746-08	17368266	28302381	19827514	628	49466											
KRTAP26-1	388818	broad.mit.edu	37	chr21	31691909	31691909	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctggcaactcttggacaAgcagaattgggggcgatagg	17	7	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31691909	T	T	31691909	3	4	43	1	0	0	0	0	1	0	0	0	8615	69	3	5	191	5	KRTAP26-1	21	31691909	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3389528	31691909	16437986	629	49467											
KRTAP6-1	337966	broad.mit.edu	37	chr21	31988960	31988960	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgaacaattctagagctcAccagatttgtctgcttgtga	8	9	3	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31988960	T	T	31988960	1	4	43	0	1	0	0	0	0	0	0	0	8641	174	6	5		5	KRTAP6-1	21	31988960	5'Flank	SNP	A	TCGA-17-Z010-01A-01W-0746-08	297051	31988960	16140935	630	49468											
ITSN1	6453	broad.mit.edu	37	chr21	35107304	35107304	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggtggttttggaaaggttCttttatggtcacagttgttc	13	4	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35107304	G	G	35107304	1	3	43	0	1	0	0	0	0	0	0	0	7996	928	32	4		4	ITSN1	21	35107304	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3118344	35107304	13022591	631	49469											
ITSN1	6453	broad.mit.edu	37	chr21	35107376	35107376	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgacatgaataatgatggAagaatggatcaagtggagtt	13	3	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35107376	C	C	35107376	2	2	43	1	0	0	0	0	0	0	0	1	7996	233	9	5		5	ITSN1	21	35107376	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08	72	35107376	13022519	632	49470											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46011398	46011398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggaggcagaggcaccaCaggaggggacgggcacgcag	20	9	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46011398	A	A	46011398	3	1	43	1	0	0	0	0	1	0	0	0	8584	478	17	3	133	3	KRTAP10-6	21	46011398	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	10904022	46011398	2118497	633	49471											
CCT8L2	150160	broad.mit.edu	37	chr22	17071757	17071757	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggcaatccctgttttattGagggtatcactagttattca	8	7	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17071757	T	T	17071757	1	4	43	0	1	0	0	0	0	0	0	0	2991	1305	45	3		3	CCT8L2	22	17071757	3'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08		17071757	34232809	634	49472											
CCT8L2	150160	broad.mit.edu	37	chr22	17076112	17076112	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaccaatgcaccatctGtaaagttgcacacagtctga	8	11	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17076112	T	T	17076112	1	4	43	0	1	0	0	0	0	0	0	0	2991	1392	48	3		3	CCT8L2	22	17076112	5'Flank	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4355	17076112	34228454	635	49473											
RTDR1	27156	broad.mit.edu	37	chr22	23401824	23401824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtggcattcaggcgcGctatggtcatgggggagtgc	17	9	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23401824	T	T	23401824	3	4	43	1	0	0	0	0	1	0	0	0	13830	1087	38	3	187	3	RTDR1	22	23401824	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	6325712	23401824	27902742	636	49474											
CRYBB1	1414	broad.mit.edu	37	chr22	27003783	27003783	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catctccttcttgcccttgtCagatctcagacttacacctg	5	15	4	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27003783	G	G	27003783	1	3	43	0	1	0	0	0	0	0	0	0	3942	841	29	4		4	CRYBB1	22	27003783	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3601959	27003783	24300783	637	49475											
CRYBB1	1414	broad.mit.edu	37	chr22	27003934	27003934	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcgagggtactcgcccttCtccaggatgaacatctcccc	9	16	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27003934	T	T	27003934	2	4	43	1	0	0	0	0	0	0	0	1	3942	912	32	4		4	CRYBB1	22	27003934	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	151	27003934	24300632	638	49476											
ISX	91464	broad.mit.edu	37	chr22	35480203	35480203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcattgaaggtggaaacccCggttccctctcagaaagctg	12	11	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35480203	A	A	35480203	1	1	43	0	1	0	0	0	0	0	0	0	7935	667	23	1		1	ISX	22	35480203	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8476269	35480203	15824363	639	49477											
DDX17	10521	broad.mit.edu	37	chr22	38883820	38883820	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaacagcaactaaaagcAagtcacagaaggcgtaaaga	8	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38883820	C	C	38883820	1	2	43	0	1	0	0	0	0	0	0	0	4377	145	5	5		5	DDX17	22	38883820	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	3403617	38883820	12420746	640	49478											
DMC1	11144	broad.mit.edu	37	chr22	38958222	38958222	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacttatagtagaagtaacCagaaagaggaaaagaaacat	8	5	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38958222	T	T	38958222	1	4	43	0	1	0	0	0	0	0	0	0	4619	609	21	4		4	DMC1	22	38958222	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	74402	38958222	12346344	641	49479											
GRAP2	9402	broad.mit.edu	37	chr22	40344529	40344529	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagaaaaggaaaaaggaaaGaaaaaaaaaaaaaactttgc	7	3	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40344529	A	A	40344529	1	1	43	0	1	0	0	0	0	0	0	0	6820	957	33	4		4	GRAP2	22	40344529	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1386307	40344529	10960037	642	49480											
SEPT3	55964	broad.mit.edu	37	chr22	42387523	42387523	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacacaggtgcacacacccCtcttttccattaccctgaca	5	17	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42387523	T	T	42387523	1	4	43	0	1	0	0	0	0	0	0	0	14178	696	24	4		4	SEPT3	22	42387523	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2042994	42387523	8917043	643	49481											
NFAM1	150372	broad.mit.edu	37	chr22	42805350	42805350	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgtggatgtgccctcaccAgggcccaccaaacgccctgc	11	16	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42805350	T	T	42805350	1	4	43	0	1	0	0	0	0	0	0	0	10453	203	7	5		5	NFAM1	22	42805350	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	417827	42805350	8499216	644	49482											
SHANK3	85358	broad.mit.edu	37	chr22	51153863	51153863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtctgcacccaccctgcCcaacaccgtctacactgtac	7	18	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51153863	A	A	51153863	1	1	43	0	1	0	0	0	0	0	0	0	14379	638	22	2		2	SHANK3	22	51153863	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8348513	51153863	150703	645	49483											
SHOX	6473	broad.mit.edu	37	chrX	591680	591680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcttttgaccagaaaagCaaggacggtaacggcggagg	14	7	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	591680	A	A	591680	3	1	43	1	0	0	0	0	1	0	0	0	14401	709	25	3	50	3	SHOX	23	591680	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08		591680	154678880	646	49484											
ASMT	438	broad.mit.edu	37	chrX	1743015	1743015	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccacagaaggctccagctGtacaaggcaagaggaagacc	11	11	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1743015	C	C	1743015	1	2	43	0	1	0	0	0	0	0	0	0	1049	1392	48	4		4	ASMT	23	1743015	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1151335	1743015	153527545	647	49485											
ARSH	347527	broad.mit.edu	37	chrX	2951228	2951228	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagcccttccactgaacccTgacaatgagccattatttga	7	12	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2951228	A	A	2951228	2	1	43	1	0	0	0	0	0	0	0	1	997	1567	55	5		5	ARSH	23	2951228	Silent	SNP	T	TCGA-17-Z010-01A-01W-0746-08	1208213	2951228	152319332	648	49486											
CNKSR2	22866	broad.mit.edu	37	chrX	21613414	21613414	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacttatttcccaatttgtAataaatgtactttgtttcct	3	7	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21613414	T	T	21613414	1	4	43	0	1	0	0	0	0	0	0	0	3639	377	13	5		5	CNKSR2	23	21613414	Intron	SNP	A	TCGA-17-Z010-01A-01W-0746-08	18662186	21613414	133657146	649	49487											
SYTL5	94122	broad.mit.edu	37	chrX	37985883	37985883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattggatggactctcaggGggaagagcagcgcctttggc	17	8	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37985883	T	T	37985883	3	4	43	1	0	0	0	0	1	0	0	0	15605	1232	43	2	2225	2	SYTL5	23	37985883	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	16372469	37985883	117284677	650	49488											
ZNF182	7569	broad.mit.edu	37	chrX	47835972	47835972	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttctgtatgagttcttTgatgtataatgagatatgat	8	3	3	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47835972	C	C	47835972	3	2	43	1	0	0	0	0	1	0	0	0	17876	1812	63	5	409	5	ZNF182	23	47835972	Missense_Mutation	SNP	T	TCGA-17-Z010-01A-01W-0746-08	9850089	47835972	107434588	651	49489											
PPP1R3F	89801	broad.mit.edu	37	chrX	49138361	49138361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggcaaaactgccagttGgctaggatggcagattttct	12	8	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49138361	T	T	49138361	1	4	43	0	1	0	0	0	0	0	0	0	12476	1363	47	2		2	PPP1R3F	23	49138361	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1302389	49138361	106132199	652	49490											
CLCN5	1184	broad.mit.edu	37	chrX	49853406	49853406	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgttggtgctatagcaggtCgacttctaggagtaggaatg	14	6	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49853406	T	T	49853406	4	4	43	1	0	0	0	0	0	1	0	0	3497	876	31	4	1647	4	CLCN5	23	49853406	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	715045	49853406	105417154	653	49491											
AKAP4	8852	broad.mit.edu	37	chrX	49955803	49955803	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagttgcgtgatgctttttgGaggaaagacctgctggacga	15	6	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49955803	T	T	49955803	1	4	43	0	1	0	0	0	0	0	0	0	453	1189	41	3		3	AKAP4	23	49955803	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	102397	49955803	105314757	654	49492											
CCNB3	85417	broad.mit.edu	37	chrX	50052412	50052412	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggagagaagtcgctcattAtgaagccattgtccattaaa	9	8	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50052412	T	T	50052412	3	4	43	1	0	0	0	0	1	0	0	0	2944	449	16	5	1257	5	CCNB3	23	50052412	Missense_Mutation	SNP	A	TCGA-17-Z010-01A-01W-0746-08	96609	50052412	105218148	655	49493											
DGKK	139189	broad.mit.edu	37	chrX	50121187	50121187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccatccacctgcactGggataccttcttcaccatca	4	19	3	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50121187	T	T	50121187	3	4	43	1	0	0	0	0	1	0	0	0	4512	1348	47	2	822	2	DGKK	23	50121187	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	68775	50121187	105149373	656	49494											
ITIH5L	347365	broad.mit.edu	37	chrX	54783871	54783871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtttgaggcatatggGggtttggggtctcaggcttg	20	4	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54783871	T	T	54783871	3	4	43	1	0	0	0	0	1	0	0	0	7978	1232	43	2	1329	2	ITIH5L	23	54783871	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	4662684	54783871	100486689	657	49495											
MAGED2	10916	broad.mit.edu	37	chrX	54841562	54841562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtagcatagtgcctagCataaaggtagatgcttaatc	10	7	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54841562	A	A	54841562	1	1	43	0	1	0	0	0	0	0	0	0	9276	725	25	3		3	MAGED2	23	54841562	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	57691	54841562	100428998	658	49496											
TRO	7216	broad.mit.edu	37	chrX	54956057	54956057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctctcccagcactggtgCtggctttggtggtgctctca	13	12	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54956057	A	A	54956057	3	1	43	1	0	0	0	0	1	0	0	0	16699	797	28	3	2942	3	TRO	23	54956057	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	114495	54956057	100314503	659	49497											
APEX2	27301	broad.mit.edu	37	chrX	55028735	55028735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtggctgctgaagaagGcctgagtggcctgtttgcca	14	11	0	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55028735	T	T	55028735	3	4	43	1	0	0	0	0	1	0	0	0	772	1203	42	3	303	3	APEX2	23	55028735	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	72678	55028735	100241825	660	49498											
ARHGEF9	23229	broad.mit.edu	37	chrX	62875606	62875607	+	Missense_Mutation	DNP	CC	AA	AA													ttgtagtacaggatgtctctCcggattaggtcctagatggg							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	62875607	AA	AA	62875606	3	1	43	1	0	0	0	0	1	0	0	0	914	842	30	3	494	3	ARHGEF9	23	62875606	Missense_Mutation	DNP	CC	TCGA-17-Z010-01A-01W-0746-08	7846871	62875606	92394954	661	49499											
FAM123B	139285	broad.mit.edu	37	chrX	63410856	63410856	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaactctaccagggcctGtgagaaactcacagtggcat	12	10	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63410856	A	A	63410856	4	1	43	1	0	0	0	0	0	1	0	0	5469	1386	48	4	1100	4	FAM123B	23	63410856	Nonsense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	535250	63410856	91859704	662	49500											
ZC3H12B	340554	broad.mit.edu	37	chrX	64722395	64722395	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacgtgtatttggctgtagCtgatacccatcctgaaggca	10	10	0	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64722395	T	T	64722395	3	4	43	1	0	0	0	0	1	0	0	0	17688	797	28	4	1835	4	ZC3H12B	23	64722395	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1311539	64722395	90548165	663	49501											
HEPH	9843	broad.mit.edu	37	chrX	65409583	65409583	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacatgtgtgcacagaaacGtgtggcctggcacttgtttg	13	8	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65409583	A	A	65409583	3	1	43	1	0	0	0	0	1	0	0	0	7121	1145	40	4	1050	4	HEPH	23	65409583	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	687188	65409583	89860977	664	49502											
HEPH	9843	broad.mit.edu	37	chrX	65427133	65427133	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgatggtacattcaggatCcctcggccaaggactggacc	11	12	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65427133	A	A	65427133	2	1	43	1	0	0	0	0	0	0	0	1	7121	845	30	3		3	HEPH	23	65427133	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	17550	65427133	89843427	665	49503											
HEPH	9843	broad.mit.edu	37	chrX	65427991	65427991	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgaagttggtgatatcctGactgtggtattcaagaataa	12	4	1	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65427991	T	T	65427991	2	4	43	1	0	0	0	0	0	0	0	1	7121	1277	45	3		3	HEPH	23	65427991	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	858	65427991	89842569	666	49504											
HEPH	9843	broad.mit.edu	37	chrX	65479926	65479926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttcctctccctcattcCcaatctctcttgcagaatgg	4	16	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65479926	A	A	65479926	1	1	43	0	1	0	0	0	0	0	0	0	7121	638	22	2		2	HEPH	23	65479926	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	51935	65479926	89790634	667	49505											
AWAT1	158833	broad.mit.edu	37	chrX	69454533	69454533	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatctttgcctccctcagGctcccgagaatcatggctca	9	14	4	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69454533	T	T	69454533	1	4	43	0	1	0	0	0	0	0	0	0	1239	1218	42	3		3	AWAT1	23	69454533	5'UTR	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3974607	69454533	85816027	668	49506											
TEX11	56159	broad.mit.edu	37	chrX	70100086	70100086	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaaggaacttgatccttaGagtaaaaccaaactggagat	9	6	0	4			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70100086	C	C	70100086	1	2	43	0	1	0	0	0	0	0	0	0	15896	957	33	4		4	TEX11	23	70100086	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	645553	70100086	85170474	669	49507											
SLC7A3	84889	broad.mit.edu	37	chrX	70146528	70146528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccagcaccaggcaaagaGcagtcagcaggacagcttca	13	12	2	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70146528	T	T	70146528	3	4	43	1	0	0	0	0	1	0	0	0	14812	971	34	3	402	3	SLC7A3	23	70146528	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	46442	70146528	85124032	670	49508											
TAF1	6872	broad.mit.edu	37	chrX	70621396	70621396	+	Frame_Shift_Del	DEL	G	-	-													agctgaaatgtggggcatgtGgtgccattggacacatgagg							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70621396	-	-	70621396	7	5	43	1	0	1	0	1	0	0	0	0	15632	1348	47	0	3963	0	TAF1	23	70621396	Frame_Shift_Del	DEL	G	TCGA-17-Z010-01A-01W-0746-08	474868	70621396	84649164	671	49509											
FAM46D	169966	broad.mit.edu	37	chrX	79698584	79698584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaattgttttggatccCatgttagacttctacagtga	7	7	2	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79698584	A	A	79698584	2	1	43	1	0	0	0	0	0	0	0	1	5619	581	21	2		2	FAM46D	23	79698584	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	9077188	79698584	75571976	672	49510											
ZNF711	7552	broad.mit.edu	37	chrX	84526199	84526199	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaatcaaatctgaaaactCacattaagtctaaacatggt	4	8	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84526199	A	A	84526199	3	1	43	1	0	0	0	0	1	0	0	0	18244	826	29	3	1677	3	ZNF711	23	84526199	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	4827615	84526199	70744361	673	49511											
CHM	1121	broad.mit.edu	37	chrX	85158369	85158369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtctttaaaaagggttccCatttaaactgtattattaaa	5	5	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85158369	A	A	85158369	1	1	43	0	1	0	0	0	0	0	0	0	3381	609	21	2		2	CHM	23	85158369	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	632170	85158369	70112191	674	49512											
PCDH11X	27328	broad.mit.edu	37	chrX	91134184	91134184	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgactctatctccaagtgttCctcaagcagttcagatccct	6	13	4	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91134184	A	A	91134184	3	1	43	1	0	0	0	0	1	0	0	0	11602	855	30	3	2951	3	PCDH11X	23	91134184	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5975815	91134184	64136376	675	49513											
COL4A6	1288	broad.mit.edu	37	chrX	107418685	107418686	+	Intron	DNP	GG	AT	AT													ccactggtcttccgggaatgGgcacacatggcctttaacat							TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	107418686	AT	AT	107418685	1	1	43	0	1	0	0	0	0	0	0	0	3727	1247	43	4		4	COL4A6	23	107418685	Intron	DNP	GG	TCGA-17-Z010-01A-01W-0746-08	16284501	107418685	47851875	676	49514											
COL4A6	1288	broad.mit.edu	37	chrX	107419023	107419023	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgaatccaacagaccccttCtctcctgttgaaaaacaaga	5	13	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107419023	T	T	107419023	2	4	43	1	0	0	0	0	0	0	0	1	3727	912	32	4		4	COL4A6	23	107419023	Silent	SNP	C	TCGA-17-Z010-01A-01W-0746-08	338	107419023	47851537	677	49515											
COL4A6	1288	broad.mit.edu	37	chrX	107421847	107421847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactactgctattgccccccCagggcatctgggcccagggc	11	17	1	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107421847	A	A	107421847	1	1	43	0	1	0	0	0	0	0	0	0	3727	609	21	2		2	COL4A6	23	107421847	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	2824	107421847	47848713	678	49516											
DCX	1641	broad.mit.edu	37	chrX	110653091	110653091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctcagcagagactgaaGggtgattgctaatggttctg	12	8	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110653091	T	T	110653091	1	4	43	0	1	0	0	0	0	0	0	0	4351	1015	35	2		2	DCX	23	110653091	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3231244	110653091	44617469	679	49517											
DOCK11	139818	broad.mit.edu	37	chrX	117777355	117777355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagtggtttcataaacagGtattggtgaaatcagttctg	10	5	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117777355	T	T	117777355	1	4	43	0	1	0	0	0	0	0	0	0	4726	1276	44	3		3	DOCK11	23	117777355	Intron	SNP	G	TCGA-17-Z010-01A-01W-0746-08	7124264	117777355	37493205	680	49518											
ANKRD58	347454	broad.mit.edu	37	chrX	118893528	118893528	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgggcagccgggtggcgCaaatgcatagccttttccgc	14	14	0	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118893528	T	T	118893528	4	4	43	1	0	0	0	0	0	1	0	0	684	711	25	4	900	4	ANKRD58	23	118893528	Nonsense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	1116173	118893528	36377032	681	49519											
ARHGAP36	158763	broad.mit.edu	37	chrX	130222687	130222687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaccctcccattccggaGcaagaccgcccattgctccg	9	17	0	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130222687	T	T	130222687	3	4	43	1	0	0	0	0	1	0	0	0	885	962	34	3	1614	3	ARHGAP36	23	130222687	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	11329159	130222687	25047873	682	49520											
TFDP3	51270	broad.mit.edu	37	chrX	132352132	132352132	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaccacttgctggtcaatGttgacactggactgtccaaa	8	10	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132352132	A	A	132352132	2	1	43	1	0	0	0	0	0	0	0	1	15922	1368	48	4		4	TFDP3	23	132352132	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	2129445	132352132	22918428	683	49521											
GPC3	2719	broad.mit.edu	37	chrX	132887385	132887385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctaactctgtgaggtcattCagtccatcatcaccccttcc	5	16	5	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132887385	A	A	132887385	1	1	43	0	1	0	0	0	0	0	0	0	6664	841	29	3		3	GPC3	23	132887385	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	535253	132887385	22383175	684	49522											
GPR101	83550	broad.mit.edu	37	chrX	136112735	136112735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggatgttcactgcctcgaCgtcatcctcactgaaattga	9	12	3	2	rs144604669		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136112735	T	T	136112735	3	4	43	1	0	0	0	0	1	0	0	0	6687	536	19	4	430	4	GPR101	23	136112735	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	3225350	136112735	19157825	685	49523											
MAGEC3	139081	broad.mit.edu	37	chrX	140985462	140985462	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagagtttttatccaagctAtccagtatcatccctagtgc	6	10	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140985462	G	G	140985462	2	3	43	1	0	0	0	0	0	0	0	1	9274	449	16	5		5	MAGEC3	23	140985462	Silent	SNP	A	TCGA-17-Z010-01A-01W-0746-08	4872727	140985462	14285098	686	49524											
MAGEC1	9947	broad.mit.edu	37	chrX	140993694	140993694	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttctccagattcctgtgagCgccgcctcctcctccacttt	7	17	1	2			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140993694	G	G	140993694	3	3	43	1	0	0	0	0	1	0	0	0	9272	767	27	4	510	4	MAGEC1	23	140993694	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	8232	140993694	14276866	687	49525											
SLITRK4	139065	broad.mit.edu	37	chrX	142717232	142717232	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagttcaatgttggcaaactGaacaggcgtctcacatttca	8	10	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142717232	T	T	142717232	3	4	43	1	0	0	0	0	1	0	0	0	14859	1299	45	3	824	3	SLITRK4	23	142717232	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	1723538	142717232	12553328	688	49526											
IDS	3423	broad.mit.edu	37	chrX	148571704	148571704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagctgatcataaaaatgCcccaggatcccactttgttt	6	11	1	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148571704	A	A	148571704	1	1	43	0	1	0	0	0	0	0	0	0	7573	754	26	3		3	IDS	23	148571704	Intron	SNP	C	TCGA-17-Z010-01A-01W-0746-08	5854472	148571704	6698856	689	49527											
MAGEA11	4110	broad.mit.edu	37	chrX	148798327	148798327	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaagggcccacgctgagaCcagcaagatgaaagttcttg	11	11	1	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148798327	G	G	148798327	3	3	43	1	0	0	0	0	1	0	0	0	9253	507	18	4	1208	4	MAGEA11	23	148798327	Missense_Mutation	SNP	C	TCGA-17-Z010-01A-01W-0746-08	226623	148798327	6472233	690	49528											
MAGEA6	4105	broad.mit.edu	37	chrX	151869755	151869755	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attggcagtacttctttcctGtgatcttcagcaaagcttcc	7	11	3	1			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151869755	A	A	151869755	3	1	43	1	0	0	0	0	1	0	0	0	9260	1377	48	4	447	4	MAGEA6	23	151869755	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	3071428	151869755	3400805	691	49529											
ZNF275	10838	broad.mit.edu	37	chrX	152613062	152613062	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctcttccgaaggagctcgGagctcaccaagcaccggcgg	13	14	2	0			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152613062	C	C	152613062	3	2	43	1	0	0	0	0	1	0	0	0	17936	1175	41	4	929	4	ZNF275	23	152613062	Missense_Mutation	SNP	G	TCGA-17-Z010-01A-01W-0746-08	743307	152613062	2657498	692	49530											
PNCK	139728	broad.mit.edu	37	chrX	152937077	152937077	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggagagtccaaagtcagaGaccatgatcttcgagtcctc	10	10	2	3			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152937077	T	T	152937077	2	4	43	1	0	0	0	0	0	0	0	1	12240	929	33	3		3	PNCK	23	152937077	Silent	SNP	G	TCGA-17-Z010-01A-01W-0746-08	324015	152937077	2333483	693	49531											
CHD5	26038	broad.mit.edu	37	chr1	6185838	6185838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactcactctgcccttccgGcctctcttcaaagtcctcat	5	17	5	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6185838	T	T	6185838	3	4	44	1	0	0	0	0	1	0	0	0	3359	1203	42	3	1765	3	CHD5	1	6185838	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08		6185838	243064783	1	49532											
C1orf127	148345	broad.mit.edu	37	chr1	11015012	11015012	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagaagggcctcaggaagaGaaggggcgagacagagatgc	19	6	1	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11015012	A	A	11015012	1	1	44	0	1	0	0	0	0	0	0	0	2014	957	33	4		4	C1orf127	1	11015012	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4829174	11015012	238235609	2	49533											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17939562	17939562	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggggctccagctttctccaGacctgactaggctaaaggag	12	11	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17939562	C	C	17939562	3	2	44	1	0	0	0	0	1	0	0	0	897	942	33	4	645	4	ARHGEF10L	1	17939562	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	6924550	17939562	231311059	3	49534											
UBR4	23352	broad.mit.edu	37	chr1	19486548	19486548	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catctagcacattttgggatCtcaataaatttgttggttcc	7	8	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19486548	A	A	19486548	1	1	44	0	1	0	0	0	0	0	0	0	17030	928	32	3		3	UBR4	1	19486548	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1546986	19486548	229764073	4	49535											
RAP1GAP	5909	broad.mit.edu	37	chr1	21938055	21938055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgtctgcccgtgggtcaCgtccaggcctcctcggaacc	11	19	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21938055	A	A	21938055	3	1	44	1	0	0	0	0	1	0	0	0	13145	536	19	3	1388	3	RAP1GAP	1	21938055	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2451507	21938055	227312566	5	49536											
RIMS3	9783	broad.mit.edu	37	chr1	41101735	41101736	+	Intron	INS	-	C	C													cttggtggccccttctgtgaINScccccccaaccccaagcaca							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41101736	C	C	41101735	6	5	44	0	1	1	1	0	0	0	0	0	13480	290	10	0		0	RIMS3	1	41101735	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	19163680	41101735	208148886	6	49537											
MAST2	23139	broad.mit.edu	37	chr1	46495683	46495683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtttgcctagaaacacCtgtgcacactgaaattgcat	7	11	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46495683	A	A	46495683	1	1	44	0	1	0	0	0	0	0	0	0	9417	696	24	2		2	MAST2	1	46495683	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5393948	46495683	202754938	7	49538											
DAB1	1600	broad.mit.edu	37	chr1	58993053	58993053	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattaagacaatttatttcaCgaaaaaaggagtaacacaga	6	6	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58993053	T	T	58993053	1	4	44	0	1	0	0	0	0	0	0	0	4250	551	19	4		4	DAB1	1	58993053	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	12497370	58993053	190257568	8	49539											
HOOK1	51361	broad.mit.edu	37	chr1	60314856	60314856	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttacttaaggaaaaagagGtaaacatagatataattgat	7	3	0	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60314856	T	T	60314856	5	4	44	1	0	0	0	0	0	0	1	0	7349	1275	44	3	1289	3	HOOK1	1	60314856	Splice_Site	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1321803	60314856	188935765	9	49540											
IL23R	149233	broad.mit.edu	37	chr1	67672764	67672764	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaactttcattatgctttAgcatgtgaatgaatgattta	6	6	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67672764	C	C	67672764	1	2	44	0	1	0	0	0	0	0	0	0	7746	435	15	5		5	IL23R	1	67672764	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	7357908	67672764	181577857	10	49541											
TNNI3K	51086	broad.mit.edu	37	chr1	74663903	74663903	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggtcagaaacaaccgggCggaggcgcaccccagggcgc	17	14	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74663903	A	A	74663903	1	1	44	0	1	0	0	0	0	0	0	0	16452	783	27	3		3	TNNI3K	1	74663903	5'Flank	SNP	C	TCGA-17-Z011-01A-01W-0746-08	6991139	74663903	174586718	11	49542											
MAGI3	260425	broad.mit.edu	37	chr1	113993197	113993197	+	Intron	DEL	G	-	-													gtggtaactatggtggtggtGggaactataatgattttgga							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113993197	-	-	113993197	6	5	44	0	1	1	0	1	0	0	0	0	9284	1363	47	0		0	MAGI3	1	113993197	Intron	DEL	G	TCGA-17-Z011-01A-01W-0746-08	39329294	113993197	135257424	12	49543											
MAN1A2	10905	broad.mit.edu	37	chr1	117984983	117984983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcttattctggaagaatTattttgacctttttagtctt	5	5	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117984983	C	C	117984983	1	2	44	0	1	0	0	0	0	0	0	0	9303	1769	61	5		5	MAN1A2	1	117984983	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	3991786	117984983	131265638	13	49544											
GDAP2	54834	broad.mit.edu	37	chr1	118429178	118429178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaacattgtttgtaaaaCagagcctttttatggcttac	6	7	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118429178	A	A	118429178	1	1	44	0	1	0	0	0	0	0	0	0	6372	493	17	3		3	GDAP2	1	118429178	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	444195	118429178	130821443	14	49545											
NBPF9	400818	broad.mit.edu	37	chr1	145071458	145071458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctactgatacccacaacaGcatagataagtttcaaaata	5	9	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145071458	T	T	145071458	1	4	44	0	1	0	0	0	0	0	0	0	10294	986	34	3		3	NBPF9	1	145071458	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	26642280	145071458	104179163	15	49546											
NOTCH2NL	388677	broad.mit.edu	37	chr1	145273221	145273221	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggggaatattgtcaacaTcgagacccctgtgagaagaa	12	7	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145273221	G	G	145273221	3	3	44	1	0	0	0	0	1	0	0	0	10644	1432	50	5	81	5	NOTCH2NL	1	145273221	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	201763	145273221	103977400	16	49547											
NBPF10	100132406	broad.mit.edu	37	chr1	145313100	145313100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccggccaactcgctgaGctcactttctcctctctctc	5	19	5	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145313100	T	T	145313100	1	4	44	0	1	0	0	0	0	0	0	0	10287	986	34	3		3	NBPF10	1	145313100	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	39879	145313100	103937521	17	49548											
NBPF10	100132406	broad.mit.edu	37	chr1	146217021	146217021	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggtttcatgggtagcataAggaagtggttaaaaaaagta	12	2	1	0	rs146388681	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146217021	G	G	146217021	1	3	44	0	1	0	0	0	0	0	0	0	10287	87	3	5		5	NBPF10	1	146217021	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	903921	146217021	103033600	18	49549											
NBPF10	100132406	broad.mit.edu	37	chr1	146217039	146217039	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaggaagtggttaaaaaaaGtaaaaggatagatccattaa	9	2	0	1	rs139739620	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146217039	C	C	146217039	1	2	44	0	1	0	0	0	0	0	0	0	10287	1044	36	4		4	NBPF10	1	146217039	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	18	146217039	103033582	19	49550											
NBPF10	100132406	broad.mit.edu	37	chr1	146398472	146398472	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagctggctgaggggtgtaGactggcacagcaacttgtcc	14	10	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146398472	T	T	146398472	3	4	44	1	0	0	0	0	1	0	0	0	10287	957	33	3		3	NBPF10	1	146398472	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	181433	146398472	102852149	20	49551											
ACP6	51205	broad.mit.edu	37	chr1	147120085	147120085	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgcacaaaccactccttaGattccaggtgctggtaaagt	9	11	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147120085	A	A	147120085	3	1	44	1	0	0	0	0	1	0	0	0	165	942	33	4	188	4	ACP6	1	147120085	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	721613	147120085	102130536	21	49552			1	45		3	3	107	G		4.780116e-07
ACP6	51205	broad.mit.edu	37	chr1	147120177	147120177	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggtcattaagagcggtatGaaggtcacatcatgagccgc	13	8	3	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147120177	A	A	147120177	2	1	44	1	0	0	0	0	0	0	0	1	165	1281	45	4		4	ACP6	1	147120177	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	92	147120177	102130444	22	49553			1	45		3	3	107	G		4.780116e-07
ACP6	51205	broad.mit.edu	37	chr1	147120191	147120191	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggtatgaaggtcacatcatGagccgcatagagatacagct	11	9	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147120191	A	A	147120191	3	1	44	1	0	0	0	0	1	0	0	0	165	1290	45	4	294	4	ACP6	1	147120191	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	14	147120191	102130430	23	49554			1	45		3	3	107	G		4.780116e-07
CGN	57530	broad.mit.edu	37	chr1	151501959	151501959	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgaggctgatcgaggtcGggagctggaagaacagaacc	17	8	0	3	rs144821285		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151501959	C	C	151501959	3	2	44	1	0	0	0	0	1	0	0	0	3333	1116	39	4	2068	4	CGN	1	151501959	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4381768	151501959	97748662	24	49555											
FCRL4	83417	broad.mit.edu	37	chr1	157557526	157557526	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaatcaccccactttctcTgcctcttagaggatttgtgc	6	14	3	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157557526	A	A	157557526	1	1	44	0	1	0	0	0	0	0	0	0	5854	1595	55	5		5	FCRL4	1	157557526	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	6055567	157557526	91693095	25	49556											
CD1E	913	broad.mit.edu	37	chr1	158324234	158324234	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttccgcatgctccaaacTtcctcctttgccaaccacag	4	18	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158324234	G	G	158324234	2	3	44	1	0	0	0	0	0	0	0	1	3008	1596	56	5		5	CD1E	1	158324234	Silent	SNP	T	TCGA-17-Z011-01A-01W-0746-08	766708	158324234	90926387	26	49557											
DUSP27	92235	broad.mit.edu	37	chr1	167096077	167096077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagacagcagcggtgagcCcggtgcagaggaggcagtag	20	8	0	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167096077	A	A	167096077	3	1	44	1	0	0	0	0	1	0	0	0	4864	623	22	2	1727	2	DUSP27	1	167096077	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	8771843	167096077	82154544	27	49558											
ADCY10	55811	broad.mit.edu	37	chr1	167844343	167844343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttagttcaataaagaaGtttaaaatcaaggcctacta	6	5	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167844343	T	T	167844343	1	4	44	0	1	0	0	0	0	0	0	0	293	1044	36	3		3	ADCY10	1	167844343	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	748266	167844343	81406278	28	49559											
BAT2L2	23215	broad.mit.edu	37	chr1	171485164	171485164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttgcaccgacagtatcaCtgtaacttgagaacatgtta	7	8	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171485164	T	T	171485164	1	4	44	0	1	0	0	0	0	0	0	0	1326	580	20	4		4	BAT2L2	1	171485164	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	3640821	171485164	77765457	29	49560											
RABGAP1L	9910	broad.mit.edu	37	chr1	174188231	174188231	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgtttttaatcagtagGtttttttttttaatcccttt	4	5	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174188231	T	T	174188231	1	4	44	0	1	0	0	0	0	0	0	0	13073	1276	44	3		3	RABGAP1L	1	174188231	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2703067	174188231	75062390	30	49561											
RFWD2	64326	broad.mit.edu	37	chr1	176145160	176145160	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagctattagtagggggggAaaaaaaaggcttaattaaat	12	2	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176145160	G	G	176145160	1	3	44	0	1	0	0	0	0	0	0	0	13368	261	9	5		5	RFWD2	1	176145160	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	1956929	176145160	73105461	31	49562											
SEC16B	89866	broad.mit.edu	37	chr1	177916909	177916909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggacagggaggggaggGgagggaagggacagggaggg	26	2	0	0	rs78879572	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177916909	T	T	177916909	1	4	44	0	1	0	0	0	0	0	0	0	14100	1247	43	2		2	SEC16B	1	177916909	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1771749	177916909	71333712	32	49563											
DHX9	1660	broad.mit.edu	37	chr1	182822532	182822532	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggattactactcaagaaaGgaagaacaagaagtgcaagc	10	6	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182822532	A	A	182822532	2	1	44	1	0	0	0	0	0	0	0	1	4556	991	35	4		4	DHX9	1	182822532	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4905623	182822532	66428089	33	49564											
KDM5B	10765	broad.mit.edu	37	chr1	202698065	202698065	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atagcaccgtttacaggctgGcttgagtaccagtcctgtag	11	10	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202698065	C	C	202698065	1	2	44	0	1	0	0	0	0	0	0	0	8204	1218	42	4		4	KDM5B	1	202698065	3'UTR	SNP	G	TCGA-17-Z011-01A-01W-0746-08	19875533	202698065	46552556	34	49565											
CR2	1380	broad.mit.edu	37	chr1	207646299	207646299	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgatcaagaaagaggcAcctggagtggccctgctccc	12	12	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207646299	T	T	207646299	3	4	44	1	0	0	0	0	1	0	0	0	3874	159	6	5	1791	5	CR2	1	207646299	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	4948234	207646299	41604322	35	49566											
HHAT	55733	broad.mit.edu	37	chr1	210664407	210664408	+	Intron	INS	-	AGAG	AGAG													tgagacacacacacacacatINSagtgtgtgtgtgtgtgtgtg					rs145981858	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGAG	210664408	AGAG	AGAG	210664407	6	5	44	0	1	1	1	0	0	0	0	0	7156	1421	49	0		0	HHAT	1	210664407	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	3018108	210664407	38586214	36	49567											
ESRRG	2104	broad.mit.edu	37	chr1	216741578	216741578	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggggtactcaaataatGtaaataagtggtggctaaat	10	5	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216741578	A	A	216741578	1	1	44	0	1	0	0	0	0	0	0	0	5304	1392	48	4		4	ESRRG	1	216741578	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	6077171	216741578	32509043	37	49568											
ZP4	57829	broad.mit.edu	37	chr1	238048918	238048918	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggatttgaagtagtaatcTctcagtgacttgagggactg	12	5	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238048918	C	C	238048918	1	2	44	0	1	0	0	0	0	0	0	0	18347	1566	54	5		5	ZP4	1	238048918	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	21307340	238048918	11201703	38	49569											
FMN2	56776	broad.mit.edu	37	chr1	240307572	240307572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggaggccaggttcatgCgggcagagtccacctgagag	16	9	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240307572	T	T	240307572	1	4	44	0	1	0	0	0	0	0	0	0	6008	783	27	4		4	FMN2	1	240307572	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2258654	240307572	8943049	39	49570											
OR11L1	391189	broad.mit.edu	37	chr1	248004459	248004459	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccgtagtagagagtgacaAcagccaggtgggagccacat	13	10	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248004459	G	G	248004459	3	3	44	1	0	0	0	0	1	0	0	0	11024	43	2	5	232	5	OR11L1	1	248004459	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	7696887	248004459	1246162	40	49571											
OR11L1	391189	broad.mit.edu	37	chr1	248005231	248005231	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaaacattctggaaaaGcacaggatgcaaggcgcaaa	10	7	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248005231	A	A	248005231	1	1	44	0	1	0	0	0	0	0	0	0	11024	986	34	4		4	OR11L1	1	248005231	5'Flank	SNP	G	TCGA-17-Z011-01A-01W-0746-08	772	248005231	1245390	41	49572											
GREB1	9687	broad.mit.edu	37	chr2	11777375	11777375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttttctctaggactcacGggagggaagcagtgagagtc	14	8	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11777375	T	T	11777375	1	4	44	0	1	0	0	0	0	0	0	0	6826	1131	39	1		1	GREB1	2	11777375	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08		11777375	231421998	42	49573											
POMC	5443	broad.mit.edu	37	chr2	25384268	25384268	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgactcgtcctcggcgccGttagggtacaccttcactgg	12	15	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25384268	A	A	25384268	2	1	44	1	0	0	0	0	0	0	0	1	12337	1136	40	4		4	POMC	2	25384268	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	13606893	25384268	217815105	43	49574											
FAM179A	165186	broad.mit.edu	37	chr2	29237240	29237240	+	Intron	DEL	C	-	-													cctgggtgtcttcagctccaCccctgttctcaacccctcag							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29237240	-	-	29237240	6	5	44	0	1	1	0	1	0	0	0	0	5550	522	18	0		0	FAM179A	2	29237240	Intron	DEL	C	TCGA-17-Z011-01A-01W-0746-08	3852972	29237240	213962133	44	49575											
GALNT14	79623	broad.mit.edu	37	chr2	31155177	31155177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaacagactctgcagcCagtctgtaggctccactggc	11	12	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31155177	A	A	31155177	1	1	44	0	1	0	0	0	0	0	0	0	6274	609	21	2		2	GALNT14	2	31155177	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1917937	31155177	212044196	45	49576											
NRXN1	9378	broad.mit.edu	37	chr2	51255230	51255230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgaggccgcgggcgctgCgagtcttgagctggaagctc	17	12	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51255230	A	A	51255230	3	1	44	1	0	0	0	0	1	0	0	0	10760	768	27	3	4816	3	NRXN1	2	51255230	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	20100053	51255230	191944143	46	49577											
ERLEC1	27248	broad.mit.edu	37	chr2	54028655	54028655	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgtgatgtacatatgtcAtcctgaatctaagcatgaaa	7	7	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54028655	C	C	54028655	3	2	44	1	0	0	0	0	1	0	0	0	5273	217	8	5	673	5	ERLEC1	2	54028655	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	2773425	54028655	189170718	47	49578											
VAX2	25806	broad.mit.edu	37	chr2	71159913	71159913	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaggtgaaggtctggttccAgaaccgccgcaccaagcaga	12	12	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71159913	T	T	71159913	3	4	44	1	0	0	0	0	1	0	0	0	17262	188	7	5	462	5	VAX2	2	71159913	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	17131258	71159913	172039460	48	49579											
ALMS1	7840	broad.mit.edu	37	chr2	73785981	73785981	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctaaacgcatttctgagtCatcttttttcttcaatatca	3	9	7	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73785981	T	T	73785981	1	4	44	0	1	0	0	0	0	0	0	0	535	841	29	4		4	ALMS1	2	73785981	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2626068	73785981	169413392	49	49580											
IMMT	10989	broad.mit.edu	37	chr2	86407050	86407051	+	Intron	INS	-	A	A													tctacccaccacaccctgccINSaaaaaaattagccaggtgta					rs144952364	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86407051	A	A	86407050	6	5	44	0	1	1	1	0	0	0	0	0	7788	609	21	0		0	IMMT	2	86407050	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	12621069	86407050	156792323	50	49581											
SNRNP200	23020	broad.mit.edu	37	chr2	96947384	96947384	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactaaaaagcaaatgtgagCctaggtattgagacacaaaa	9	6	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96947384	G	G	96947384	1	3	44	0	1	0	0	0	0	0	0	0	14966	754	26	4		4	SNRNP200	2	96947384	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	10540334	96947384	146251989	51	49582											
RGPD4	285190	broad.mit.edu	37	chr2	108488344	108488344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaacaggatctaacttcaGttttaaatctgctttgagtc	6	8	3	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108488344	T	T	108488344	3	4	44	1	0	0	0	0	1	0	0	0	13396	1029	36	3	3962	3	RGPD4	2	108488344	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	11540960	108488344	134711029	52	49583											
POLR1B	84172	broad.mit.edu	37	chr2	113308768	113308768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacagtttctgcgggtcgGgagtttgggagtgctttggc	16	8	2	0	rs111982100	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113308768	T	T	113308768	1	4	44	0	1	0	0	0	0	0	0	0	12305	1247	43	2		2	POLR1B	2	113308768	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4820424	113308768	129890605	53	49584											
CNTNAP5	129684	broad.mit.edu	37	chr2	125470735	125470735	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccttccttccttccttcctCcctccctccctctctctttt	0	22	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125470735	T	T	125470735	1	4	44	0	1	0	0	0	0	0	0	0	3682	870	30	4		4	CNTNAP5	2	125470735	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	12161967	125470735	117728638	54	49585											
CNTNAP5	129684	broad.mit.edu	37	chr2	125546112	125546112	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcaaaagaaggcataagaGagcagcagtgattgaacagg	14	5	0	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125546112	T	T	125546112	1	4	44	0	1	0	0	0	0	0	0	0	3682	957	33	3		3	CNTNAP5	2	125546112	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	75377	125546112	117653261	55	49586											
LRP1B	53353	broad.mit.edu	37	chr2	141571192	141571192	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatcaacccccaatcaataCaaagcaaccaagctatagaa	3	12	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141571192	G	G	141571192	1	3	44	0	1	0	0	0	0	0	0	0	9042	493	17	4		4	LRP1B	2	141571192	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	16025080	141571192	101628181	56	49587											
KCNH7	90134	broad.mit.edu	37	chr2	163369874	163369874	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttccctccttctttcctTccttccttccttccttcctt	0	20	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163369874	G	G	163369874	1	3	44	0	1	0	0	0	0	0	0	0	8107	1798	62	5		5	KCNH7	2	163369874	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	21798682	163369874	79829499	57	49588											
MFSD6	54842	broad.mit.edu	37	chr2	191342673	191342673	+	Intron	DEL	G	-	-													gagagtaggcattccagcatGggggaagagctgtgtgcgaa					rs79295326		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	191342673	-	-	191342673	6	5	44	0	1	1	0	1	0	0	0	0	9628	1363	47	0		0	MFSD6	2	191342673	Intron	DEL	G	TCGA-17-Z011-01A-01W-0746-08	27972799	191342673	51856700	58	49589											
C2orf67	151050	broad.mit.edu	37	chr2	211018966	211018966	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgaatgttgctgccattaTacagtatgtttttcagctta	8	7	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211018966	A	A	211018966	3	1	44	1	0	0	0	0	1	0	0	0	2208	1406	49	5	2678	5	C2orf67	2	211018966	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	19676293	211018966	32180407	59	49590											
ABCA12	26154	broad.mit.edu	37	chr2	215799049	215799049	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgaagttcattccactgAaaatgatgctacagtataaa	6	7	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215799049	T	T	215799049	1	4	44	0	1	0	0	0	0	0	0	0	30	261	9	5		5	ABCA12	2	215799049	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	4780083	215799049	27400324	60	49591											
SLC11A1	6556	broad.mit.edu	37	chr2	219248954	219248955	+	Intron	INS	-	C	C													ccctcactctactcctcccaINSccccccaacagggcaccttc					rs17215535	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219248955	C	C	219248954	6	5	44	0	1	1	1	0	0	0	0	0	14493	174	6	0		0	SLC11A1	2	219248954	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	3449905	219248954	23950419	61	49592											
DOCK10	55619	broad.mit.edu	37	chr2	225681357	225681357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgtttgctgatcttatgGgcagacacaaagggataaag	12	5	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225681357	T	T	225681357	3	4	44	1	0	0	0	0	1	0	0	0	4725	1232	43	2	3327	2	DOCK10	2	225681357	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	6432403	225681357	17518016	62	49593											
ECEL1	9427	broad.mit.edu	37	chr2	233346507	233346507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccccagtcgtcgtagcCgtgggtcagctcatgtccaa	10	15	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233346507	A	A	233346507	3	1	44	1	0	0	0	0	1	0	0	0	4931	652	23	1	502	1	ECEL1	2	233346507	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	7665150	233346507	9852866	63	49594											
ILKAP	80895	broad.mit.edu	37	chr2	239082240	239082240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaccgcagcgcttgtaCtgcccgtccccaatggagcg	12	15	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239082240	A	A	239082240	3	1	44	1	0	0	0	0	1	0	0	0	7784	564	20	3	299	3	ILKAP	2	239082240	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5735733	239082240	4117133	64	49595											
WNT7A	7476	broad.mit.edu	37	chr3	13916383	13916383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttccagagggcacctgaGggtattctggtgtccctaga	14	9	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13916383	T	T	13916383	1	4	44	0	1	0	0	0	0	0	0	0	17521	1015	35	2		2	WNT7A	3	13916383	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08		13916383	184106047	65	49596											
DAZL	1618	broad.mit.edu	37	chr3	16639579	16639579	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctagagttcagatatttttGataaaattactcaccctttg	6	7	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16639579	T	T	16639579	1	4	44	0	1	0	0	0	0	0	0	0	4279	1305	45	3		3	DAZL	3	16639579	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2723196	16639579	181382851	66	49597											
SCN10A	6336	broad.mit.edu	37	chr3	38793872	38793872	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagagagccccgatggctTtcgtggtctccaggaaagac	13	11	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38793872	A	A	38793872	3	1	44	1	0	0	0	0	1	0	0	0	14025	1838	64	5	4345	5	SCN10A	3	38793872	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	22154293	38793872	159228558	67	49598											
PHLDB2	90102	broad.mit.edu	37	chr3	111637972	111637972	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggagttggctgcaatggaAgaaacccggatagtcattct	12	8	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111637972	T	T	111637972	3	4	44	1	0	0	0	0	1	0	0	0	11947	69	3	5	1868	5	PHLDB2	3	111637972	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	72844100	111637972	86384458	68	49599											
KIAA1407	57577	broad.mit.edu	37	chr3	113724677	113724677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttgtgctgcttattgcCaggtgcactcagagagacat	12	9	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113724677	T	T	113724677	3	4	44	1	0	0	0	0	1	0	0	0	8299	594	21	4	1296	4	KIAA1407	3	113724677	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2086705	113724677	84297753	69	49600											
PLS1	5357	broad.mit.edu	37	chr3	142402908	142402909	+	Missense_Mutation	DNP	GG	TT	TT													gttgtacagtggtcaacattGgtgcatcagatctcaaagaa							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	142402909	TT	TT	142402908	3	4	44	1	0	0	0	0	1	0	0	0	12202	1348	47	2	662	2	PLS1	3	142402908	Missense_Mutation	DNP	GG	TCGA-17-Z011-01A-01W-0746-08	28678231	142402908	55619522	70	49601											
HLTF	6596	broad.mit.edu	37	chr3	148802652	148802652	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaactccatactggacagtCtgcaagtacttccaaactgg	8	11	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148802652	A	A	148802652	3	1	44	1	0	0	0	0	1	0	0	0	7282	912	32	3	3080	3	HLTF	3	148802652	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	6399744	148802652	49219778	71	49602											
KCNAB1	7881	broad.mit.edu	37	chr3	156192753	156192753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgactgatgccttttggCctcagcgtttaaccccaaaa	7	12	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156192753	A	A	156192753	1	1	44	0	1	0	0	0	0	0	0	0	8079	754	26	3		3	KCNAB1	3	156192753	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	7390101	156192753	41829677	72	49603											
SI	6476	broad.mit.edu	37	chr3	164758646	164758646	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagtttaattgatatcttGatttacctccattaaacttt	4	6	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164758646	T	T	164758646	1	4	44	0	1	0	0	0	0	0	0	0	14410	1305	45	3		3	SI	3	164758646	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	8565893	164758646	33263784	73	49604											
GOLIM4	27333	broad.mit.edu	37	chr3	167750636	167750636	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccacacatcattatttcgaGacacctaggccaagcacatc	6	14	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167750636	A	A	167750636	3	1	44	1	0	0	0	0	1	0	0	0	6630	942	33	4	1274	4	GOLIM4	3	167750636	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2991990	167750636	30271794	74	49605											
CLDN11	5010	broad.mit.edu	37	chr3	170141044	170141044	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgttcttccctgcatccGgatgggccaggagcccggtg	14	13	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170141044	A	A	170141044	3	1	44	1	0	0	0	0	1	0	0	0	3504	1116	39	4	326	4	CLDN11	3	170141044	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2390408	170141044	27881386	75	49606											
KCNMB2	10242	broad.mit.edu	37	chr3	178525288	178525288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgggcacttttcagaaGcatttaacctgactctccaa	6	11	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178525288	T	T	178525288	1	4	44	0	1	0	0	0	0	0	0	0	8145	986	34	3		3	KCNMB2	3	178525288	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	8384244	178525288	19497142	76	49607											
HTR3D	200909	broad.mit.edu	37	chr3	183755624	183755624	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatacatttcagaggtaaGcagcatgggagactctaacc	11	8	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183755624	A	A	183755624	1	1	44	0	1	0	0	0	0	0	0	0	7517	986	34	4		4	HTR3D	3	183755624	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	5230336	183755624	14266806	77	49608											
CLDN16	10686	broad.mit.edu	37	chr3	190122610	190122610	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattctagctgggtttggaTttctcaccctgctccttggt	9	10	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190122610	C	C	190122610	3	2	44	1	0	0	0	0	1	0	0	0	3508	1493	52	5	497	5	CLDN16	3	190122610	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	6366986	190122610	7899820	78	49609											
APOD	347	broad.mit.edu	37	chr3	195298086	195298086	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaattctccaagccggggCgctagccttcagtttgcata	11	11	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195298086	T	T	195298086	1	4	44	0	1	0	0	0	0	0	0	0	803	783	27	4		4	APOD	3	195298086	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5175476	195298086	2724344	79	49610											
RNF168	165918	broad.mit.edu	37	chr3	196229919	196229919	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaactcgccttttcgacggtCgactggaagcacggtttaca	10	11	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196229919	A	A	196229919	2	1	44	1	0	0	0	0	0	0	0	1	13570	871	31	3		3	RNF168	3	196229919	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08	931833	196229919	1792511	80	49611											
POLN	353497	broad.mit.edu	37	chr4	2159474	2159474	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaatatttagacgatttcatc							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2159474	-	-	2159474	6	5	44	0	1	1	0	1	0	0	0	0	12302	957	33	0		0	POLN	4	2159474	Intron	DEL	G	TCGA-17-Z011-01A-01W-0746-08		2159474	188994802	81	49612											
SORCS2	57537	broad.mit.edu	37	chr4	7514299	7514299	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccggattgggcccctcccCcaacctcaggcccccagact	8	21	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7514299	T	T	7514299	1	4	44	0	1	0	0	0	0	0	0	0	15045	638	22	4		4	SORCS2	4	7514299	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5354825	7514299	183639977	82	49613											
LIAS	11019	broad.mit.edu	37	chr4	39472947	39472947	+	Intron	DEL	T	-	-													gtacatgtatcttgatttgcTttttttttttttttttattt					rs67611743		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39472947	-	-	39472947	6	5	44	0	1	1	0	1	0	0	0	0	8850	1624	56	0		0	LIAS	4	39472947	Intron	DEL	T	TCGA-17-Z011-01A-01W-0746-08	31958648	39472947	151681329	83	49614											
N4BP2	55728	broad.mit.edu	37	chr4	40119678	40119678	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttatgtacaaaattcaatTtgaaatataatttttaaaag	3	4	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40119678	A	A	40119678	1	1	44	0	1	0	0	0	0	0	0	0	10204	1856	64	5		5	N4BP2	4	40119678	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	646731	40119678	151034598	84	49615											
APBB2	323	broad.mit.edu	37	chr4	40832537	40832537	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgctggtgtgtcacatcgAaatacatgacatttcaaaat	7	7	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40832537	G	G	40832537	2	3	44	1	0	0	0	0	0	0	0	1	763	243	9	5		5	APBB2	4	40832537	Silent	SNP	A	TCGA-17-Z011-01A-01W-0746-08	712859	40832537	150321739	85	49616											
KDR	3791	broad.mit.edu	37	chr4	55976971	55976972	+	Intron	INS	-	T	T													aaaaaaaaaggtcaacttacINStgtaaatggtcatttgattt							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55976972	T	T	55976971	6	5	44	0	1	1	1	0	0	0	0	0	8209	580	20	0		0	KDR	4	55976971	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	15144434	55976971	135177305	86	49617											
EPHA5	2044	broad.mit.edu	37	chr4	66361037	66361037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttactagactataacaGgctccatcatgctgtttcct	6	10	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66361037	T	T	66361037	1	4	44	0	1	0	0	0	0	0	0	0	5212	1015	35	2		2	EPHA5	4	66361037	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	10384066	66361037	124793239	87	49618											
SLC4A4	8671	broad.mit.edu	37	chr4	72205152	72205152	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgacagcccagctccccctCagctcttcacggaactggat	8	16	3	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72205152	T	T	72205152	4	4	44	1	0	0	0	0	0	1	0	0	14770	827	29	4	450	4	SLC4A4	4	72205152	Nonsense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5844115	72205152	118949124	88	49619											
CDKL2	8999	broad.mit.edu	37	chr4	76525509	76525509	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatcatggtgtaggagCtcagcacagaagggtctttt	12	6	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76525509	T	T	76525509	2	4	44	1	0	0	0	0	0	0	0	1	3184	796	28	4		4	CDKL2	4	76525509	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08	4320357	76525509	114628767	89	49620											
DMP1	1758	broad.mit.edu	37	chr4	88584103	88584103	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggacagctcgcacacActctcccactcaaaaagtga	9	13	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88584103	T	T	88584103	2	4	44	1	0	0	0	0	0	0	0	1	4623	146	6	5		5	DMP1	4	88584103	Silent	SNP	A	TCGA-17-Z011-01A-01W-0746-08	12058594	88584103	102570173	90	49621											
METTL14	57721	broad.mit.edu	37	chr4	119626964	119626964	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctatttggaagagatagtAcaattcgaccaggtaggacc	10	7	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119626964	G	G	119626964	3	3	44	1	0	0	0	0	1	0	0	0	9591	391	14	5	1092	5	METTL14	4	119626964	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	31042861	119626964	71527312	91	49622											
ZNF827	152485	broad.mit.edu	37	chr4	146803624	146803625	+	Intron	INS	-	T	T													ctgatagtttggagaagggaINSttttatttcacaatcatgca							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146803625	T	T	146803624	6	5	44	0	1	1	1	0	0	0	0	0	18309	348	12	0		0	ZNF827	4	146803624	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	27176660	146803624	44350652	92	49623											
PDLIM3	27295	broad.mit.edu	37	chr4	186429773	186429773	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggagccagacagtccagaCagaagaacacagagaacacg	12	11	0	5			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186429773	G	G	186429773	1	3	44	0	1	0	0	0	0	0	0	0	11775	493	17	4		4	PDLIM3	4	186429773	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	39626149	186429773	4724503	93	49624											
IRX4	50805	broad.mit.edu	37	chr5	1879616	1879616	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgacaacctcccaacccAcctgcgttcttggagctctt	7	16	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1879616	T	T	1879616	5	4	44	1	0	0	0	0	0	0	1	0	7916	173	6	5	829	5	IRX4	5	1879616	Splice_Site	SNP	A	TCGA-17-Z011-01A-01W-0746-08		1879616	179035644	94	49625											
SEMA5A	9037	broad.mit.edu	37	chr5	9052051	9052051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcccggagcactggctgcCcatggggaacaggaggatgc	16	11	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9052051	A	A	9052051	3	1	44	1	0	0	0	0	1	0	0	0	14150	623	22	2	461	2	SEMA5A	5	9052051	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	7172435	9052051	171863209	95	49626											
MARCH6	10299	broad.mit.edu	37	chr5	10426547	10426547	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgaccttcactatattgttCgtaaactggcagctcccgtg	8	11	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10426547	T	T	10426547	3	4	44	1	0	0	0	0	1	0	0	0	9397	884	31	4	2513	4	MARCH6	5	10426547	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1374496	10426547	170488713	96	49627											
DAB2	1601	broad.mit.edu	37	chr5	39382954	39382954	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgctggctgggtttgCgaacttgaaaagggccatgg	14	9	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39382954	A	A	39382954	2	1	44	1	0	0	0	0	0	0	0	1	4251	755	27	3		3	DAB2	5	39382954	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08	28956407	39382954	141532306	97	49628											
HCN1	348980	broad.mit.edu	37	chr5	45262664	45262664	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgggactgggggagtgcaGgttgctgtgagacaggctgg	21	6	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45262664	A	A	45262664	2	1	44	1	0	0	0	0	0	0	0	1	7062	991	35	4		4	HCN1	5	45262664	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	5879710	45262664	135652596	98	49629											
MOCS2	4338	broad.mit.edu	37	chr5	52396220	52396220	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaggtccacatgctaaaaTgtgttattttcttaacttac	5	8	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52396220	A	A	52396220	1	1	44	0	1	0	0	0	0	0	0	0	9785	1479	51	5		5	MOCS2	5	52396220	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	7133556	52396220	128519040	99	49630											
PDE4D	5144	broad.mit.edu	37	chr5	59755912	59755912	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taactcatcagcacctgcatCagaatggtcagtaaaccagg	8	11	4	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59755912	A	A	59755912	1	1	44	0	1	0	0	0	0	0	0	0	11736	841	29	3		3	PDE4D	5	59755912	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	7359692	59755912	121159348	100	49631											
APC	324	broad.mit.edu	37	chr5	112175324	112175324	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggttctagtttatcttcaGaatcagccaggcacaaagct	9	9	4	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112175324	T	T	112175324	4	4	44	1	0	0	0	0	0	1	0	0	765	943	33	3	4091	3	APC	5	112175324	Nonsense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	52419412	112175324	68739936	101	49632											
COMMD10	51397	broad.mit.edu	37	chr5	115428253	115428253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaataggcagtgtatcaCaatgtgaagccagcagcttt	9	7	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115428253	A	A	115428253	3	1	44	1	0	0	0	0	1	0	0	0	3747	477	17	3	269	3	COMMD10	5	115428253	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	3252929	115428253	65487007	102	49633											
ACSL6	23305	broad.mit.edu	37	chr5	131310521	131310521	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catccgcacaagtgggagccCactgactctgtaagaaaaaa	9	11	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131310521	T	T	131310521	4	4	44	1	0	0	0	0	0	1	0	0	181	595	21	4	1214	4	ACSL6	5	131310521	Nonsense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	15882268	131310521	49604739	103	49634											
LY86	9450	broad.mit.edu	37	chr6	6595604	6595605	+	Intron	DEL	AG	-	-													agaggagaaggggagaagaaAgaagagaggggagaagagaa					rs67176222		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6595605	-	-	6595604	6	5	44	0	1	1	0	1	0	0	0	0	9188	87	3	0		0	LY86	6	6595604	Intron	DEL	AG	TCGA-17-Z011-01A-01W-0746-08		6595604	164519463	104	49635											
PHACTR1	221692	broad.mit.edu	37	chr6	13061017	13061018	+	Intron	INS	-	T	T													ctctacatggtactggtgacINSttttttcattggcttttggc					rs138055237	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13061018	T	T	13061017	6	5	44	0	1	1	1	0	0	0	0	0	11904	580	20	0		0	PHACTR1	6	13061017	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	6465413	13061017	158054050	105	49636											
ATXN1	6310	broad.mit.edu	37	chr6	16581427	16581428	+	Intron	DEL	TG	-	-													ccccatgttcgagaatgcacTgtgtgtgtgtgtgtgtgtgt					rs36226540		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16581428	-	-	16581427	6	5	44	0	1	1	0	1	0	0	0	0	1213	1595	55	0		0	ATXN1	6	16581427	Intron	DEL	TG	TCGA-17-Z011-01A-01W-0746-08	3520410	16581427	154533640	106	49637											
MICB	4277	broad.mit.edu	37	chr6	31473307	31473307	+	Intron	SNP	G	A	A													gcatttcctgcctcctcaggGaggtcgggacagcagacctg							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31473307	A	A	31473307	1	1	44	0	1	0	0	0	0	0	0	0	9668	1189	41	4		4	MICB	6	31473307	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	14891880	31473307	139641760	107	49638	242	2									
MICB	4277	broad.mit.edu	37	chr6	31473312	31473312	+	Intron	SNP	C	T	T													tcctgcctcctcagggaggtCgggacagcagacctgtgtgt							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31473312	T	T	31473312	1	4	44	0	1	0	0	0	0	0	0	0	9668	899	31	4		4	MICB	6	31473312	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5	31473312	139641755	108	49639	242	2									
PSMB8	5696	broad.mit.edu	37	chr6	32809248	32809249	+	Intron	INS	-	C	C													ggtttctcaatcttaaatcaINSccccccccaccacccgccga							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32809249	C	C	32809248	6	5	44	0	1	1	1	0	0	0	0	0	12789	174	6	0		0	PSMB8	6	32809248	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	1335936	32809248	138305819	109	49640											
SCUBE3	222663	broad.mit.edu	37	chr6	35210732	35210732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctagctcccagctttgCtcccctgccctcctgctcac	5	22	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35210732	A	A	35210732	1	1	44	0	1	0	0	0	0	0	0	0	14059	812	28	3		3	SCUBE3	6	35210732	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2401484	35210732	135904335	110	49641											
TEAD3	7005	broad.mit.edu	37	chr6	35444189	35444189	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagaggcagcagctgaggGgagcggggccaggggctcat	19	10	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35444189	A	A	35444189	3	1	44	1	0	0	0	0	1	0	0	0	15862	1232	43	4	711	4	TEAD3	6	35444189	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	233457	35444189	135670878	111	49642											
RCAN2	10231	broad.mit.edu	37	chr6	46234680	46234680	+	Intron	DEL	T	-	-													ccagagacattccaccgacaTttaaaatcaagaatcctccc					rs35464827		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46234680	-	-	46234680	6	5	44	0	1	1	0	1	0	0	0	0	13277	1508	52	0		0	RCAN2	6	46234680	Intron	DEL	T	TCGA-17-Z011-01A-01W-0746-08	10790491	46234680	124880387	112	49643											
GPR116	221395	broad.mit.edu	37	chr6	46886013	46886013	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaactcgtaggtcctgggGaaactgagataaatactgaa	11	6	0	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46886013	A	A	46886013	1	1	44	0	1	0	0	0	0	0	0	0	6698	1189	41	4		4	GPR116	6	46886013	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	651333	46886013	124229054	113	49644											
MCM3	4172	broad.mit.edu	37	chr6	52132735	52132735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctctgattcatcctcacttCgcttcttacgtttcttctcc	3	15	6	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52132735	A	A	52132735	3	1	44	1	0	0	0	0	1	0	0	0	9480	884	31	3	442	3	MCM3	6	52132735	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5246722	52132735	118982332	114	49645											
ELOVL5	60481	broad.mit.edu	37	chr6	53155595	53155596	+	Intron	INS	-	A	A													atggcctgaggctgatggagINSaattcattttgacccctgaa					rs138158779	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53155596	A	A	53155595	6	5	44	0	1	1	1	0	0	0	0	0	5119	957	33	0		0	ELOVL5	6	53155595	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	1022860	53155595	117959472	115	49646											
PRIM2	5558	broad.mit.edu	37	chr6	57388012	57388012	+	Intron	DEL	A	-	-													ggcgaacattaagaacagagAaaaaaaatccaaaatgttta					rs5876590		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57388012	-	-	57388012	6	5	44	0	1	1	0	1	0	0	0	0	12597	261	9	0		0	PRIM2	6	57388012	Intron	DEL	A	TCGA-17-Z011-01A-01W-0746-08	4232417	57388012	113727055	116	49647											
PRIM2	5558	broad.mit.edu	37	chr6	57504624	57504624	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaacctatgtttgattggtGtacctgaaagtgaccgggag	12	7	0	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57504624	C	C	57504624	1	2	44	0	1	0	0	0	0	0	0	0	12597	1392	48	4		4	PRIM2	6	57504624	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	116612	57504624	113610443	117	49648											
SFRS13B	135295	broad.mit.edu	37	chr6	89814773	89814773	+	Intron	DEL	A	-	-													ggaaacaatgagaccctatcAaaaaaatatatatctatttc					rs35869140		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89814773	-	-	89814773	6	5	44	0	1	1	0	1	0	0	0	0	14282	145	5	0		0	SFRS13B	6	89814773	Intron	DEL	A	TCGA-17-Z011-01A-01W-0746-08	32310149	89814773	81300294	118	49649											
CENPW	387103	broad.mit.edu	37	chr6	126661425	126661425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttgacagagaggatggcGctgtcgaccatagtctccca	11	11	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126661425	T	T	126661425	2	4	44	1	0	0	0	0	0	0	0	1	3274	1074	38	3		3	CENPW	6	126661425	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	36846652	126661425	44453642	119	49650											
NMBR	4829	broad.mit.edu	37	chr6	142399730	142399730	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgtattctccaggaagatTgtgtgcgcttttaattaagg	10	5	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142399730	G	G	142399730	3	3	44	1	0	0	0	0	1	0	0	0	10582	1812	63	5	447	5	NMBR	6	142399730	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	15738305	142399730	28715337	120	49651											
LTV1	84946	broad.mit.edu	37	chr6	144164578	144164578	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacttcgagggtgtcatcgCcgcccctgttgggggtgagc	17	11	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144164578	A	A	144164578	1	1	44	0	1	0	0	0	0	0	0	0	9168	754	26	3		3	LTV1	6	144164578	5'UTR	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1764848	144164578	26950489	121	49652											
KIF25	3834	broad.mit.edu	37	chr6	168414496	168414496	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctgccttcctggacttcCggtcaacacaggtgcctctc	8	17	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168414496	T	T	168414496	1	4	44	0	1	0	0	0	0	0	0	0	8363	667	23	4		4	KIF25	6	168414496	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	24249918	168414496	2700571	122	49653											
POM121L12	285877	broad.mit.edu	37	chr7	53104222	53104222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtctccttcgccctcgaGgtcacccagtctgctggccc	11	17	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104222	T	T	53104222	3	4	44	1	0	0	0	0	1	0	0	0	12336	991	35	2	860	2	POM121L12	7	53104222	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08		53104222	106034441	123	49654											
SEMA3E	9723	broad.mit.edu	37	chr7	83277700	83277700	+	Intron	DEL	T	-	-													ttttttcttttttctttttcTttttttttttttttaaacaa							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83277700	-	-	83277700	6	5	44	0	1	1	0	1	0	0	0	0	14141	1624	56	0		0	SEMA3E	7	83277700	Intron	DEL	T	TCGA-17-Z011-01A-01W-0746-08	30173478	83277700	75860963	124	49655											
ACTL6B	51412	broad.mit.edu	37	chr7	100253210	100253210	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtggtggggaagtcagcCtggtggggaagggttggggg	23	4	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100253210	A	A	100253210	5	1	44	1	0	0	0	0	0	0	1	0	199	695	24	2	1226	2	ACTL6B	7	100253210	Splice_Site	SNP	C	TCGA-17-Z011-01A-01W-0746-08	16975510	100253210	58885453	125	49656											
NAPEPLD	222236	broad.mit.edu	37	chr7	102760088	102760088	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaaatctttttcctatctCttcaaaagcagggcaataac	4	11	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102760088	T	T	102760088	3	4	44	1	0	0	0	0	1	0	0	0	10257	922	32	4	316	4	NAPEPLD	7	102760088	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2506878	102760088	56378575	126	49657											
PTPRZ1	5803	broad.mit.edu	37	chr7	121513486	121513486	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaaaaacatttccttcGctccccctccctctccactc	1	19	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121513486	T	T	121513486	1	4	44	0	1	0	0	0	0	0	0	0	12922	1102	38	3		3	PTPRZ1	7	121513486	5'UTR	SNP	G	TCGA-17-Z011-01A-01W-0746-08	18753398	121513486	37625177	127	49658											
PLXNA4	91584	broad.mit.edu	37	chr7	131833511	131833511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctagctcaagggtgtgtcCattgcaagtgctagcacatg	12	9	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131833511	A	A	131833511	1	1	44	0	1	0	0	0	0	0	0	0	12217	609	21	2		2	PLXNA4	7	131833511	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	10320025	131833511	27305152	128	49659											
EXOC4	60412	broad.mit.edu	37	chr7	133011661	133011661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactcaaggctcagcaatgGcaggcgccccttccccagcc	9	18	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133011661	T	T	133011661	1	4	44	0	1	0	0	0	0	0	0	0	5348	1218	42	3		3	EXOC4	7	133011661	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1178150	133011661	26127002	129	49660											
ACTR3C	653857	broad.mit.edu	37	chr7	149983569	149983569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtttgatccacttctgggGatccacatcatacttggcaa	8	11	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149983569	T	T	149983569	3	4	44	1	0	0	0	0	1	0	0	0	214	1174	41	3	286	3	ACTR3C	7	149983569	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	16971908	149983569	9155094	130	49661											
AGAP3	116988	broad.mit.edu	37	chr7	150838972	150838973	+	Intron	INS	-	C	C													gagccctgatggcataaacaINScccccccaacagaggcagag							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150838973	C	C	150838972	6	5	44	0	1	1	1	0	0	0	0	0	369	174	6	0		0	AGAP3	7	150838972	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	855403	150838972	8299691	131	49662											
CSMD1	64478	broad.mit.edu	37	chr8	2949195	2949195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagaacctaagtgaaaCagaaaaacaaaaacattcag	6	8	1	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2949195	A	A	2949195	1	1	44	0	1	0	0	0	0	0	0	0	3978	493	17	3		3	CSMD1	8	2949195	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08		2949195	143414827	132	49663											
DLC1	10395	broad.mit.edu	37	chr8	12949016	12949016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtattattcaaggaaaCccaaagaagagagaaaaaaa	8	5	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12949016	A	A	12949016	1	1	44	0	1	0	0	0	0	0	0	0	4590	522	18	3		3	DLC1	8	12949016	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	9999821	12949016	133415006	133	49664											
DLC1	10395	broad.mit.edu	37	chr8	12952701	12952701	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgggaccccaaacacaCtccggtccttgtagtctgga	10	13	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12952701	T	T	12952701	3	4	44	1	0	0	0	0	1	0	0	0	4590	565	20	4	1397	4	DLC1	8	12952701	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	3685	12952701	133411321	134	49665											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19362892	19362892	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtacaccttctgtagagTaaagctatcgaaaggcactg	10	9	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19362892	C	C	19362892	3	2	44	1	0	0	0	0	1	0	0	0	3972	1638	57	5	1172	5	CSGALNACT1	8	19362892	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	6410191	19362892	127001130	135	49666											
UBXN2B	137886	broad.mit.edu	37	chr8	59352016	59352016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtaaggagtaatgtgaaGtgactttaaaaaagatctac	9	5	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59352016	T	T	59352016	1	4	44	0	1	0	0	0	0	0	0	0	17041	1044	36	3		3	UBXN2B	8	59352016	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	39989124	59352016	87012006	136	49667											
NKAIN3	286183	broad.mit.edu	37	chr8	63659724	63659724	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcattatctaatcagaaCtcttctttgctggcattttt	6	8	5	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63659724	G	G	63659724	1	3	44	0	1	0	0	0	0	0	0	0	10532	580	20	4		4	NKAIN3	8	63659724	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	4307708	63659724	82704298	137	49668											
GGH	8836	broad.mit.edu	37	chr8	63948311	63948311	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcatgactttattacggCatttttgcattaatattcct	4	7	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63948311	T	T	63948311	3	4	44	1	0	0	0	0	1	0	0	0	6421	710	25	4	860	4	GGH	8	63948311	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	288587	63948311	82415711	138	49669											
FAM164A	51101	broad.mit.edu	37	chr8	79609710	79609710	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatcttcacgattaccGcagccaagtggcgctggcaa	11	12	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79609710	A	A	79609710	2	1	44	1	0	0	0	0	0	0	0	1	5523	1074	38	4		4	FAM164A	8	79609710	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	15661399	79609710	66754312	139	49670											
KCNS2	3788	broad.mit.edu	37	chr8	99440881	99440881	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcaaccctggcgaggaccCtaggttcgaaatcgtggagc	15	11	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99440881	T	T	99440881	3	4	44	1	0	0	0	0	1	0	0	0	8159	681	24	4	676	4	KCNS2	8	99440881	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	19831171	99440881	46923141	140	49671											
CSMD3	114788	broad.mit.edu	37	chr8	113518959	113518959	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacatagtctgcattgacgGtgatagtccagtcacagtct	9	9	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113518959	C	C	113518959	3	2	44	1	0	0	0	0	1	0	0	0	3980	1261	44	4	6439	4	CSMD3	8	113518959	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	14078078	113518959	32845063	141	49672											
TMEM65	157378	broad.mit.edu	37	chr8	125334234	125334234	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttgaaattttaattctaGaaaacaaagaaaaatgaaat	4	2	1	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125334234	C	C	125334234	1	2	44	0	1	0	0	0	0	0	0	0	16317	957	33	4		4	TMEM65	8	125334234	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	11815275	125334234	21029788	142	49673											
OC90	729330	broad.mit.edu	37	chr8	133067293	133067293	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaggagaacaaaggatgGggcttaggcagcaactggaa	15	6	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133067293	T	T	133067293	1	4	44	0	1	0	0	0	0	0	0	0	10909	1247	43	2		2	OC90	8	133067293	5'UTR	SNP	G	TCGA-17-Z011-01A-01W-0746-08	7733059	133067293	13296729	143	49674											
PLEC	5339	broad.mit.edu	37	chr8	144993686	144993686	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagtaggggtctctgtagcCggtgacggccttctcggcag	16	11	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144993686	T	T	144993686	3	4	44	1	0	0	0	0	1	0	0	0	12147	652	23	4	3344	4	PLEC	8	144993686	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	11926393	144993686	1370336	144	49675											
RANBP6	26953	broad.mit.edu	37	chr9	6013939	6013939	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctctcagaagcttgagttCcttctgaacagcaagctcaa	7	12	3	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6013939	A	A	6013939	4	1	44	1	0	0	0	0	0	1	0	0	13139	864	30	3	1652	3	RANBP6	9	6013939	Nonsense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08		6013939	135199492	145	49676											
MPDZ	8777	broad.mit.edu	37	chr9	13126768	13126768	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaatacccaaacccccctGatcctagaaaagtaaaaaca	4	13	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13126768	T	T	13126768	3	4	44	1	0	0	0	0	1	0	0	0	9816	1299	45	3	1713	3	MPDZ	9	13126768	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	7112829	13126768	128086663	146	49677											
AGTPBP1	23287	broad.mit.edu	37	chr9	88247825	88247825	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgcagcaaagcttcccTagctgaactgttcttccctc	7	15	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88247825	C	C	88247825	2	2	44	1	0	0	0	0	0	0	0	1	400	1509	53	5		5	AGTPBP1	9	88247825	Silent	SNP	T	TCGA-17-Z011-01A-01W-0746-08	75121057	88247825	52965606	147	49678											
GABBR2	9568	broad.mit.edu	37	chr9	101213959	101213959	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgtgcatctctaacaagctCccagatgatgcagaccacac	7	13	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101213959	G	G	101213959	1	3	44	0	1	0	0	0	0	0	0	0	6216	870	30	4		4	GABBR2	9	101213959	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	12966134	101213959	39999472	148	49679											
ANKS6	203286	broad.mit.edu	37	chr9	101546486	101546486	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaactgtgggcctggtaccaTaggctgatttctcctgtggt	13	9	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101546486	C	C	101546486	1	2	44	0	1	0	0	0	0	0	0	0	692	1421	49	5		5	ANKS6	9	101546486	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	332527	101546486	39666945	149	49680											
GRIN3A	116443	broad.mit.edu	37	chr9	104454190	104454191	+	Intron	DNP	CC	AA	AA													agtatctctgagtcatacctCcctcatctctaaaatgagga							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	104454191	AA	AA	104454190	1	1	44	0	1	0	0	0	0	0	0	0	6849	870	30	3		3	GRIN3A	9	104454190	Intron	DNP	CC	TCGA-17-Z011-01A-01W-0746-08	2907704	104454190	36759241	150	49681											
TOR1A	1861	broad.mit.edu	37	chr9	132585000	132585000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgccggtgcctgtccaccCgtgcagggagagcgtgagag	16	11	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132585000	A	A	132585000	3	1	44	1	0	0	0	0	1	0	0	0	16495	652	23	1	710	1	TOR1A	9	132585000	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	28130810	132585000	8628431	151	49682											
LAMC3	10319	broad.mit.edu	37	chr9	133952808	133952808	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacggtggctcacgcctgtAatcgcagcactttgggaggc	14	12	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133952808	G	G	133952808	1	3	44	0	1	0	0	0	0	0	0	0	8688	377	13	5		5	LAMC3	9	133952808	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	1367808	133952808	7260623	152	49683											
NUP214	8021	broad.mit.edu	37	chr9	134098162	134098162	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcacatcttcatctcttCagatacctctaacctatttg	2	15	6	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134098162	T	T	134098162	1	4	44	0	1	0	0	0	0	0	0	0	10857	841	29	4		4	NUP214	9	134098162	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	145354	134098162	7115269	153	49684											
LARP4B	23185	broad.mit.edu	37	chr10	909732	909732	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tattctgagggacccagagcGagagcgttcatgtctgctgg	14	9	3	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	909732	A	A	909732	2	1	44	1	0	0	0	0	0	0	0	1	8703	1045	37	4		4	LARP4B	10	909732	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08		909732	134625015	154	49685											
UCN3	114131	broad.mit.edu	37	chr10	5411988	5411988	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtgtgtgtatatgtgtGtgtatatgcgtgtgtatatg	14	1	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5411988	C	C	5411988	1	2	44	0	1	0	0	0	0	0	0	0	17055	1392	48	4		4	UCN3	10	5411988	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4502256	5411988	130122759	155	49686											
MLLT10	8028	broad.mit.edu	37	chr10	21994381	21994381	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtatttgcaggtaccAgtcatggtaggcaggggcag	16	6	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21994381	G	G	21994381	1	3	44	0	1	0	0	0	0	0	0	0	9719	203	7	5		5	MLLT10	10	21994381	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	16582393	21994381	113540366	156	49687											
GPR158	57512	broad.mit.edu	37	chr10	25885717	25885717	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggatccagaggacattcGggtaatgccagtactctatc	10	10	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25885717	A	A	25885717	3	1	44	1	0	0	0	0	1	0	0	0	6728	1130	39	4	2182	4	GPR158	10	25885717	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	3891336	25885717	109649030	157	49688											
ZNF248	57209	broad.mit.edu	37	chr10	38109784	38109784	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccattctgttttgcatgtaTttatttcttcttgcatattt	4	8	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38109784	C	C	38109784	1	2	44	0	1	0	0	0	0	0	0	0	17919	1508	52	5		5	ZNF248	10	38109784	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	12224067	38109784	97424963	158	49689											
PCDH15	65217	broad.mit.edu	37	chr10	55582503	55582503	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcctgggaaagcaaaaTgaagagtctgaagagagaga	15	4	1	6			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55582503	G	G	55582503	2	3	44	1	0	0	0	0	0	0	0	1	11605	1451	51	5		5	PCDH15	10	55582503	Silent	SNP	T	TCGA-17-Z011-01A-01W-0746-08	17472719	55582503	79952244	159	49690											
PCDH15	65217	broad.mit.edu	37	chr10	56423945	56423945	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttaccatcatcatactgGcccaagcagatttcaaagag	6	12	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56423945	T	T	56423945	2	4	44	1	0	0	0	0	0	0	0	1	11605	1190	42	3		3	PCDH15	10	56423945	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	841442	56423945	79110802	160	49691											
ZWINT	11130	broad.mit.edu	37	chr10	58118400	58118400	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggctgctggggtttatcatCtggaagattctctgcctcag	12	10	4	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58118400	T	T	58118400	3	4	44	1	0	0	0	0	1	0	0	0	18378	913	32	4	132	4	ZWINT	10	58118400	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1694455	58118400	77416347	161	49692											
TACC2	10579	broad.mit.edu	37	chr10	123974999	123975000	+	Intron	INS	-	C	C													ttgatcttgatggttttatgINSccccccccgggggaggtttt							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123975000	C	C	123974999	6	5	44	0	1	1	1	0	0	0	0	0	15621	1334	46	0		0	TACC2	10	123974999	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	65856599	123974999	11559748	162	49693											
FAM53B	9679	broad.mit.edu	37	chr10	126477764	126477764	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaaataactgagggatacaGagcaaaagtcaccactatat	7	8	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126477764	C	C	126477764	1	2	44	0	1	0	0	0	0	0	0	0	5631	957	33	4		4	FAM53B	10	126477764	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2502765	126477764	9056983	163	49694											
ADAM12	8038	broad.mit.edu	37	chr10	128013633	128013633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcatcagaagtggggcCacaaagaaactcagaggaca	10	11	3	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128013633	A	A	128013633	1	1	44	0	1	0	0	0	0	0	0	0	236	609	21	2		2	ADAM12	10	128013633	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1535869	128013633	7521114	164	49695											
PHRF1	57661	broad.mit.edu	37	chr11	585556	585556	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagcttgaggtagtagcCctttccagcttgaggtagta	11	9	0	2	rs78164018		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	585556	T	T	585556	1	4	44	0	1	0	0	0	0	0	0	0	11956	638	22	4		4	PHRF1	11	585556	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08		585556	134420960	165	49696											
ART5	116969	broad.mit.edu	37	chr11	3660107	3660107	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcagagtcttccaggggGgcagagaggaggccccctca	16	11	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3660107	T	T	3660107	1	4	44	0	1	0	0	0	0	0	0	0	1004	1247	43	2		2	ART5	11	3660107	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	3074551	3660107	131346409	166	49697											
SPTY2D1	144108	broad.mit.edu	37	chr11	18637460	18637460	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttccatttcatactctcGgtcggttccttggctggtat	8	11	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18637460	A	A	18637460	4	1	44	1	0	0	0	0	0	1	0	0	15244	1124	39	4	1712	4	SPTY2D1	11	18637460	Nonsense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	14977353	18637460	116369056	167	49698											
LUZP2	338645	broad.mit.edu	37	chr11	24998287	24998287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaagttaaagtatGctcattgcttttcttgattt	5	4	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24998287	T	T	24998287	1	4	44	0	1	0	0	0	0	0	0	0	9174	1334	46	3		3	LUZP2	11	24998287	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	6360827	24998287	110008229	168	49699											
WT1	7490	broad.mit.edu	37	chr11	32438145	32438145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcatggatctggcaagccCcccagatcccagaatccagt	9	14	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32438145	A	A	32438145	1	1	44	0	1	0	0	0	0	0	0	0	17535	638	22	2		2	WT1	11	32438145	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	7439858	32438145	102568371	169	49700											
MADD	8567	broad.mit.edu	37	chr11	47306739	47306739	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcagccaacatgtcagtgGcaatcggtgagagcctgggc	13	10	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47306739	C	C	47306739	3	2	44	1	0	0	0	0	1	0	0	0	9240	1203	42	4	2451	4	MADD	11	47306739	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	14868594	47306739	87699777	170	49701											
OR4C15	81309	broad.mit.edu	37	chr11	55322156	55322156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtccttcctggatgcgtGcttctcatctgtcatcaccc	7	16	4	0	rs150289014		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55322156	T	T	55322156	3	4	44	1	0	0	0	0	1	0	0	0	11142	1319	46	3	376	3	OR4C15	11	55322156	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	8015417	55322156	79684360	171	49702											
OR8H3	390152	broad.mit.edu	37	chr11	55890174	55890174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttttgtcttcttgggtaCtgctgaatgttatcttctct	8	8	4	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55890174	A	A	55890174	3	1	44	1	0	0	0	0	1	0	0	0	11333	565	20	3	328	3	OR8H3	11	55890174	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	568018	55890174	79116342	172	49703											
OR8K3	219473	broad.mit.edu	37	chr11	56085680	56085680	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgtgaaatttaggtatatCttctgttagctttgcatact	7	5	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56085680	T	T	56085680	1	4	44	0	1	0	0	0	0	0	0	0	11338	928	32	4		4	OR8K3	11	56085680	5'Flank	SNP	C	TCGA-17-Z011-01A-01W-0746-08	195506	56085680	78920836	173	49704											
C1S	716	broad.mit.edu	37	chr12	7170189	7170189	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttttttgtgactcttctCttagataatctcaggagaca	6	7	3	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7170189	T	T	7170189	1	4	44	0	1	0	0	0	0	0	0	0	1994	928	32	4		4	C1S	12	7170189	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08		7170189	126681706	174	49705											
C3AR1	719	broad.mit.edu	37	chr12	8211392	8211392	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagggacagtgggtggaacGtgtgagctcctcactgaagg	17	7	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8211392	A	A	8211392	3	1	44	1	0	0	0	0	1	0	0	0	2227	1145	40	4	62	4	C3AR1	12	8211392	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1041203	8211392	125640503	175	49706											
MAGOHB	55110	broad.mit.edu	37	chr12	10763255	10763255	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacatcatttttgtaattgCtgttgttggcatatctaagc	8	6	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10763255	T	T	10763255	3	4	44	1	0	0	0	0	1	0	0	0	9287	797	28	4	343	4	MAGOHB	12	10763255	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2551863	10763255	123088640	176	49707											
MGP	4256	broad.mit.edu	37	chr12	15039254	15039254	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttctaggagaacttcGctttctacactgattataat	5	9	4	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15039254	T	T	15039254	1	4	44	0	1	0	0	0	0	0	0	0	9651	1102	38	3		3	MGP	12	15039254	5'Flank	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4275999	15039254	118812641	177	49708											
PDE3A	5139	broad.mit.edu	37	chr12	20766498	20766498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatccttgagagccgtgaGcaacttgctcagcacacagc	9	14	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20766498	T	T	20766498	3	4	44	1	0	0	0	0	1	0	0	0	11731	971	34	3	1143	3	PDE3A	12	20766498	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	5727244	20766498	113085397	178	49709											
SLCO1C1	53919	broad.mit.edu	37	chr12	20896221	20896221	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatatatttcttgtaatggTgcttttgttgattttaggtg	9	2	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20896221	C	C	20896221	1	2	44	0	1	0	0	0	0	0	0	0	14839	1711	59	5		5	SLCO1C1	12	20896221	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	129723	20896221	112955674	179	49710											
GYS2	2998	broad.mit.edu	37	chr12	21721761	21721761	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctcatagtgtaacatcattCggaactgaaagataggtgat	9	7	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21721761	A	A	21721761	1	1	44	0	1	0	0	0	0	0	0	0	6978	899	31	3		3	GYS2	12	21721761	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	825540	21721761	112130134	180	49711											
ABCC9	10060	broad.mit.edu	37	chr12	22063913	22063913	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgagagggtttctgaaatCtggtccccaaagaaaaaaag	11	6	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22063913	T	T	22063913	5	4	44	1	0	0	0	0	0	0	1	0	59	927	32	4	3908	4	ABCC9	12	22063913	Splice_Site	SNP	C	TCGA-17-Z011-01A-01W-0746-08	342152	22063913	111787982	181	49712											
KRT73	319101	broad.mit.edu	37	chr12	53011809	53011809	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattagggcagtggctcccTcctgagtccttaaaagggga	12	9	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53011809	A	A	53011809	1	1	44	0	1	0	0	0	0	0	0	0	8557	1566	54	5		5	KRT73	12	53011809	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	30947896	53011809	80840086	182	49713											
NACA	4666	broad.mit.edu	37	chr12	57114590	57114590	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctttgacttgaggggaagCgatggctagggtagttgtgg	17	4	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57114590	T	T	57114590	1	4	44	0	1	0	0	0	0	0	0	0	10227	768	27	4		4	NACA	12	57114590	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	4102781	57114590	76737305	183	49714											
LRRIQ1	84125	broad.mit.edu	37	chr12	85459115	85459116	+	Missense_Mutation	DNP	CT	TC	TC													agtgtacaaatcttcagtttCtatcccttcgacgctgtgga							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	85459116	TC	TC	85459115	3	4	44	1	0	0	0	0	1	0	0	0	9116	912	32	4	2497	4	LRRIQ1	12	85459115	Missense_Mutation	DNP	CT	TCGA-17-Z011-01A-01W-0746-08	28344525	85459115	48392780	184	49715											
CDK17	5128	broad.mit.edu	37	chr12	96780714	96780714	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacagcttcccttttcttaGgtttttactttaggctcaac	5	10	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96780714	C	C	96780714	1	2	44	0	1	0	0	0	0	0	0	0	3163	1015	35	4		4	CDK17	12	96780714	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	11321599	96780714	37071181	185	49716											
NT5DC3	51559	broad.mit.edu	37	chr12	104190852	104190852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttagaaacaggggcccaCgcaagggacagagccacgaa	13	11	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104190852	A	A	104190852	1	1	44	0	1	0	0	0	0	0	0	0	10787	551	19	3		3	NT5DC3	12	104190852	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	7410138	104190852	29661043	186	49717											
ANAPC7	51434	broad.mit.edu	37	chr12	110819628	110819628	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggattattgcttcttggactCtgcccatgttcctaagtgct	9	10	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110819628	A	A	110819628	3	1	44	1	0	0	0	0	1	0	0	0	606	913	32	3	656	3	ANAPC7	12	110819628	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	6628776	110819628	23032267	187	49718											
PTPN11	5781	broad.mit.edu	37	chr12	112926888	112926888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcggtctcagaggtcagGgatggtccagacagaagcac	16	9	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112926888	T	T	112926888	3	4	44	1	0	0	0	0	1	0	0	0	12886	1232	43	2	1558	2	PTPN11	12	112926888	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2107260	112926888	20925007	188	49719											
KSR2	283455	broad.mit.edu	37	chr12	118293230	118293230	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccgaccccggggcctgctCacctgacatgtggacattcc	10	18	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118293230	A	A	118293230	1	1	44	0	1	0	0	0	0	0	0	0	8654	841	29	3		3	KSR2	12	118293230	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5366342	118293230	15558665	189	49720											
TUBA3C	7278	broad.mit.edu	37	chr13	19752442	19752442	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccttgccgatggtgtaatGgcctctggcgtaattattgg	12	9	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19752442	C	C	19752442	3	2	44	1	0	0	0	0	1	0	0	0	16872	1348	47	4	1045	4	TUBA3C	13	19752442	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08		19752442	95417436	190	49721											
SACS	26278	broad.mit.edu	37	chr13	23910183	23910183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaggatttccctctttcGtgccttttccaagattctga	6	10	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23910183	T	T	23910183	3	4	44	1	0	0	0	0	1	0	0	0	13915	1145	40	3	5911	3	SACS	13	23910183	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4157741	23910183	91259695	191	49722											
MTUS2	23281	broad.mit.edu	37	chr13	29656390	29656390	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgatattggacttctagccTgcagcactgtgagaaataaa	9	8	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29656390	A	A	29656390	1	1	44	0	1	0	0	0	0	0	0	0	10060	1595	55	5		5	MTUS2	13	29656390	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	5746207	29656390	85513488	192	49723											
TRPC4	7223	broad.mit.edu	37	chr13	38320025	38320025	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtagcagtttgcttcactGtgattaaactctatggcatt	9	7	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38320025	C	C	38320025	1	2	44	0	1	0	0	0	0	0	0	0	16705	1392	48	4		4	TRPC4	13	38320025	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	8663635	38320025	76849853	193	49724											
KLHL1	57626	broad.mit.edu	37	chr13	70549943	70549944	+	Intron	DEL	CA	-	-													gttgatgacagcctataaacCacacacacacacacacacac							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70549944	-	-	70549943	6	5	44	0	1	1	0	1	0	0	0	0	8436	609	21	0		0	KLHL1	13	70549943	Intron	DEL	CA	TCGA-17-Z011-01A-01W-0746-08	32229918	70549943	44619935	194	49725											
FGF14	2259	broad.mit.edu	37	chr13	102670440	102670440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctgtgtctctcttcttcTgttttcttaaaaagtttggt	7	7	6	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102670440	C	C	102670440	1	2	44	0	1	0	0	0	0	0	0	0	5900	1595	55	5		5	FGF14	13	102670440	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	32120497	102670440	12499438	195	49726											
RASA3	22821	broad.mit.edu	37	chr13	114748891	114748891	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgttgcctggtgctcaccCgtggctgcgggagcttttcc	13	15	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114748891	T	T	114748891	1	4	44	0	1	0	0	0	0	0	0	0	13170	667	23	4		4	RASA3	13	114748891	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	12078451	114748891	420987	196	49727											
NDRG2	57447	broad.mit.edu	37	chr14	21487897	21487897	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcagaatttccagagagcTcttcctgaaggagagaacaa	9	9	2	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21487897	A	A	21487897	3	1	44	1	0	0	0	0	1	0	0	0	10347	1551	54	5	526	5	NDRG2	14	21487897	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08		21487897	85861643	197	49728											
RABGGTA	5875	broad.mit.edu	37	chr14	24737810	24737810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcgttgagggaggcagCaggcaggtcacagagctggg	19	8	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24737810	T	T	24737810	3	4	44	1	0	0	0	0	1	0	0	0	13075	710	25	4	819	4	RABGGTA	14	24737810	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	3249913	24737810	82611730	198	49729											
ARID4A	5926	broad.mit.edu	37	chr14	58766460	58766460	+	Intron	SNP	G	T	T													tgtttactttctttcccttgGtcgctccccgcagttgactg							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58766460	T	T	58766460	1	4	44	0	1	0	0	0	0	0	0	0	921	1276	44	3		3	ARID4A	14	58766460	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	34028650	58766460	48583080	199	49730	243	2									
ARID4A	5926	broad.mit.edu	37	chr14	58766465	58766465	+	Intron	SNP	T	G	G													actttctttcccttggtcgcTccccgcagttgactgattat							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58766465	G	G	58766465	1	3	44	0	1	0	0	0	0	0	0	0	921	1566	54	5		5	ARID4A	14	58766465	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	5	58766465	48583075	200	49731	243	2									
SYT16	83851	broad.mit.edu	37	chr14	62547464	62547464	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagttagaaagcagggattCtgaaggagcacaaaggggca	15	6	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62547464	T	T	62547464	1	4	44	0	1	0	0	0	0	0	0	0	15591	928	32	4		4	SYT16	14	62547464	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	3780999	62547464	44802076	201	49732											
SMOC1	64093	broad.mit.edu	37	chr14	70480272	70480272	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctgacttttcaaatgcTgagggagggtgagagagtgg	16	7	1	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70480272	C	C	70480272	1	2	44	0	1	0	0	0	0	0	0	0	14915	1595	55	5		5	SMOC1	14	70480272	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	7932808	70480272	36869268	202	49733											
MAP3K9	4293	broad.mit.edu	37	chr14	71196920	71196920	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgggtagaaaggccctgCagggcaggagaccctctgaa	14	11	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71196920	A	A	71196920	1	1	44	0	1	0	0	0	0	0	0	0	9349	725	25	3		3	MAP3K9	14	71196920	3'UTR	SNP	C	TCGA-17-Z011-01A-01W-0746-08	716648	71196920	36152620	203	49734											
NEK9	91754	broad.mit.edu	37	chr14	75580843	75580843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtttatagctatgccataCaccaaacactgaggctggaa	9	9	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75580843	A	A	75580843	1	1	44	0	1	0	0	0	0	0	0	0	10426	493	17	3		3	NEK9	14	75580843	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	4383923	75580843	31768697	204	49735											
C14orf145	145508	broad.mit.edu	37	chr14	81228077	81228077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatctgattccatcagtcCccttactttaccaaaataaa	3	11	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81228077	A	A	81228077	1	1	44	0	1	0	0	0	0	0	0	0	1762	638	22	2		2	C14orf145	14	81228077	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5647234	81228077	26121463	205	49736											
CYP46A1	10858	broad.mit.edu	37	chr14	100187687	100187687	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagtaggagggaagcttctGggcggatgtgggtgatcatg	19	4	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100187687	C	C	100187687	1	2	44	0	1	0	0	0	0	0	0	0	4215	1363	47	4		4	CYP46A1	14	100187687	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	18959610	100187687	7161853	206	49737											
OCA2	4948	broad.mit.edu	37	chr15	28000705	28000705	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagctcatgagaacatggccTtagcacctttgcattttcac	7	11	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28000705	G	G	28000705	1	3	44	0	1	0	0	0	0	0	0	0	10910	1624	56	5		5	OCA2	15	28000705	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08		28000705	74530687	207	49738											
ATPBD4	89978	broad.mit.edu	37	chr15	35699463	35699463	+	Intron	DEL	A	-	-													gaatttatgcatttttttttAaagaaggtttccagtgaatt					rs72461027		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35699463	-	-	35699463	6	5	44	0	1	1	0	1	0	0	0	0	1206	377	13	0		0	ATPBD4	15	35699463	Intron	DEL	A	TCGA-17-Z011-01A-01W-0746-08	7698758	35699463	66831929	208	49739											
FSIP1	161835	broad.mit.edu	37	chr15	39914359	39914360	+	Intron	INS	-	TAAC	TAAC													actgtgcaggcactgtcaagINStaaccatctgttcaagtatt					rs138421954	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TAAC	39914360	TAAC	TAAC	39914359	6	5	44	0	1	1	1	0	0	0	0	0	6134	1044	36	0		0	FSIP1	15	39914359	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	4214896	39914359	62617033	209	49740											
TP53BP1	7158	broad.mit.edu	37	chr15	43738868	43738868	+	Intron	DEL	T	-	-													cagcaattcaaggtcatcaaTttgcctgtttggctccacag							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43738868	-	-	43738868	6	5	44	0	1	1	0	1	0	0	0	0	16507	1508	52	0		0	TP53BP1	15	43738868	Intron	DEL	T	TCGA-17-Z011-01A-01W-0746-08	3824509	43738868	58792524	210	49741											
B2M	567	broad.mit.edu	37	chr15	45007532	45007532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgatgaccaaatgtaaaCacttggtgcctgatatagct	8	8	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45007532	A	A	45007532	1	1	44	0	1	0	0	0	0	0	0	0	1249	493	17	3		3	B2M	15	45007532	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1268664	45007532	57523860	211	49742											
GATM	2628	broad.mit.edu	37	chr15	45660326	45660326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgtccacttggcgccaCggtggaagtagtctttgata	12	9	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45660326	A	A	45660326	3	1	44	1	0	0	0	0	1	0	0	0	6325	536	19	3	678	3	GATM	15	45660326	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	652794	45660326	56871066	212	49743											
USP50	373509	broad.mit.edu	37	chr15	50836842	50836842	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccaccagcggcaagatgcTgcagagacactgtgagatgg	13	10	0	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50836842	C	C	50836842	3	2	44	1	0	0	0	0	1	0	0	0	17209	1580	55	5	838	5	USP50	15	50836842	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	5176516	50836842	51694550	213	49744											
PARP6	56965	broad.mit.edu	37	chr15	72533707	72533707	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaatggccccttgattcctCagggcagcctcagctgctgt	11	13	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72533707	A	A	72533707	1	1	44	0	1	0	0	0	0	0	0	0	11558	841	29	3		3	PARP6	15	72533707	3'UTR	SNP	C	TCGA-17-Z011-01A-01W-0746-08	21696865	72533707	29997685	214	49745											
ARNT2	9915	broad.mit.edu	37	chr15	80743379	80743379	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattggcttaataaatgttGagcaatgctcttgacctgtt	9	6	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80743379	T	T	80743379	1	4	44	0	1	0	0	0	0	0	0	0	970	1305	45	3		3	ARNT2	15	80743379	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	8209672	80743379	21788013	215	49746											
IL16	3603	broad.mit.edu	37	chr15	81585074	81585074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtggcagtgctgagaagcCgtcctctgacgtggacatca	14	10	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81585074	A	A	81585074	3	1	44	1	0	0	0	0	1	0	0	0	7703	652	23	1	1640	1	IL16	15	81585074	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	841695	81585074	20946318	216	49747											
PRC1	9055	broad.mit.edu	37	chr15	91520119	91520119	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgtaatcccagcactttGggaggccgaggcgagtggat	14	10	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91520119	C	C	91520119	1	2	44	0	1	0	0	0	0	0	0	0	12552	1363	47	4		4	PRC1	15	91520119	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	9935045	91520119	11011273	217	49748											
SV2B	9899	broad.mit.edu	37	chr15	91769847	91769848	+	Missense_Mutation	DNP	CC	AA	AA													tttttcgtcttgggtttggcCctgatggccgatggggtgga							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	91769848	AA	AA	91769847	3	1	44	1	0	0	0	0	1	0	0	0	15536	610	22	2	356	2	SV2B	15	91769847	Missense_Mutation	DNP	CC	TCGA-17-Z011-01A-01W-0746-08	249728	91769847	10761545	218	49749											
A2BP1	54715	broad.mit.edu	37	chr16	7645633	7645633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcaccgtggtagagggccGtaaaatcgaggtgcatgttc	15	9	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7645633	T	T	7645633	3	4	44	1	0	0	0	0	1	0	0	0	3	1145	40	3	660	3	A2BP1	16	7645633	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08		7645633	82709120	219	49750											
CLEC16A	23274	broad.mit.edu	37	chr16	11133665	11133665	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccgtgccaaatgcggccgAgaagaccacctacaaccacc	8	18	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11133665	T	T	11133665	3	4	44	1	0	0	0	0	1	0	0	0	3532	304	11	5	1642	5	CLEC16A	16	11133665	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	3488032	11133665	79221088	220	49751											
MKL2	57496	broad.mit.edu	37	chr16	14294920	14294920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagagcttagtccatgttgCaacgaggagtgttggctttg	13	6	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14294920	A	A	14294920	1	1	44	0	1	0	0	0	0	0	0	0	9695	725	25	3		3	MKL2	16	14294920	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	3161255	14294920	76059833	221	49752											
MYH11	4629	broad.mit.edu	37	chr16	15850278	15850278	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacttggggtggctgccctGctccgtgcacagcttctcca	12	14	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15850278	C	C	15850278	3	2	44	1	0	0	0	0	1	0	0	0	10125	1328	46	4	4396	4	MYH11	16	15850278	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1555358	15850278	74504475	222	49753											
RBBP6	5930	broad.mit.edu	37	chr16	24581297	24581297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagctcactctaaatcaGcaaaagaacaccaagaaaca	5	10	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24581297	A	A	24581297	3	1	44	1	0	0	0	0	1	0	0	0	13211	971	34	4	3406	4	RBBP6	16	24581297	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	8731019	24581297	65773456	223	49754											
CD19	930	broad.mit.edu	37	chr16	28950157	28950157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttccagcctacttccagtGccacccatgttctcctcctc	4	20	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28950157	A	A	28950157	1	1	44	0	1	0	0	0	0	0	0	0	3003	1334	46	4		4	CD19	16	28950157	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4368860	28950157	61404596	224	49755											
PPP4C	5531	broad.mit.edu	37	chr16	30094792	30094792	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcaggtctatggcttctaCgatgagtgcctgcgcaagta	12	10	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30094792	T	T	30094792	2	4	44	1	0	0	0	0	0	0	0	1	12503	547	19	4		4	PPP4C	16	30094792	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08	1144635	30094792	60259961	225	49756											
RNF40	9810	broad.mit.edu	37	chr16	30779731	30779731	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttcaggaacgggaaggtcCcagcctaggacctccacctg	12	14	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30779731	G	G	30779731	3	3	44	1	0	0	0	0	1	0	0	0	13604	623	22	4	1905	4	RNF40	16	30779731	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	684939	30779731	59575022	226	49757											
HEATR3	55027	broad.mit.edu	37	chr16	50128703	50128703	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcctccaagaacatttcccAggtaagagttttaaaatttt	7	8	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50128703	T	T	50128703	3	4	44	1	0	0	0	0	1	0	0	0	7096	202	7	5	1644	5	HEATR3	16	50128703	Missense_Mutation	SNP	A	TCGA-17-Z011-01A-01W-0746-08	19348972	50128703	40226050	227	49758											
C16orf57	79650	broad.mit.edu	37	chr16	58043944	58043944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcagcctgtcccagaGtgtggttctgcgccaccact	9	17	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58043944	T	T	58043944	3	4	44	1	0	0	0	0	1	0	0	0	1835	1029	36	3	387	3	C16orf57	16	58043944	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	7915241	58043944	32310809	228	49759											
C16orf70	80262	broad.mit.edu	37	chr16	67166314	67166314	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatctgtgggcccatcttgtGaagcctagtattaaaaaata	9	7	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67166314	A	A	67166314	1	1	44	0	1	0	0	0	0	0	0	0	1843	1305	45	4		4	C16orf70	16	67166314	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	9122370	67166314	23188439	229	49760											
CRISPLD2	83716	broad.mit.edu	37	chr16	84922827	84922827	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgatcacagcccttcctgTgcttccagacctcaagcatc	7	16	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84922827	C	C	84922827	1	2	44	0	1	0	0	0	0	0	0	0	3915	1711	59	5		5	CRISPLD2	16	84922827	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	17756513	84922827	5431926	230	49761											
KLHDC4	54758	broad.mit.edu	37	chr16	87742907	87742907	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggccttccacgcctccaTcctgtgcaggtccaggcagt	10	16	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87742907	A	A	87742907	3	1	44	1	0	0	0	0	1	0	0	0	8429	1435	50	5	159	5	KLHDC4	16	87742907	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	2820080	87742907	2611846	231	49762											
CBFA2T3	863	broad.mit.edu	37	chr16	89017014	89017014	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttccggatctgttcacccGtcccctggaccggcaccgcc	9	19	3	0	rs112228144		TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89017014	C	C	89017014	1	2	44	0	1	0	0	0	0	0	0	0	2724	1160	40	4		4	CBFA2T3	16	89017014	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1274107	89017014	1337739	232	49763											
SCARF1	8578	broad.mit.edu	37	chr17	1543283	1543283	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaacacaggtggggcaGgtagagccacagtcttcccc	12	14	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1543283	C	C	1543283	2	2	44	1	0	0	0	0	0	0	0	1	13995	987	35	4		4	SCARF1	17	1543283	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08		1543283	79651927	233	49764											
ALOXE3	59344	broad.mit.edu	37	chr17	8018989	8018989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggaggaggggaagagagtCctgacaaatagttcttgctg	15	6	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8018989	A	A	8018989	3	1	44	1	0	0	0	0	1	0	0	0	542	855	30	3	1817	3	ALOXE3	17	8018989	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	6475706	8018989	73176221	234	49765											
MYH13	8735	broad.mit.edu	37	chr17	10218923	10218923	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccagctgcagcagatttcTtgatgtagcactgctctgac	10	12	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10218923	A	A	10218923	1	1	44	0	1	0	0	0	0	0	0	0	10126	1624	56	5		5	MYH13	17	10218923	Intron	SNP	T	TCGA-17-Z011-01A-01W-0746-08	2199934	10218923	70976287	235	49766											
RICH2	9912	broad.mit.edu	37	chr17	12823096	12823096	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatcccaaatattcaaaagCagaggaaacacttagccaag	6	9	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12823096	G	G	12823096	3	3	44	1	0	0	0	0	1	0	0	0	13466	711	25	4	434	4	RICH2	17	12823096	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2604173	12823096	68372114	236	49767											
TRPV2	51393	broad.mit.edu	37	chr17	16336799	16336799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatactgtgaagtgctgcGcggcacttccctgctccgct	11	13	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16336799	T	T	16336799	1	4	44	0	1	0	0	0	0	0	0	0	16721	1102	38	3		3	TRPV2	17	16336799	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	3513703	16336799	64858411	237	49768											
MPRIP	23164	broad.mit.edu	37	chr17	17088233	17088233	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccatccaagttgagcacGcgccttccccagcttgcagc	9	17	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17088233	T	T	17088233	1	4	44	0	1	0	0	0	0	0	0	0	9837	1102	38	3		3	MPRIP	17	17088233	3'UTR	SNP	G	TCGA-17-Z011-01A-01W-0746-08	751434	17088233	64106977	238	49769											
LGALS9B	284194	broad.mit.edu	37	chr17	20361549	20361549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaagggcatccccttctGgaagggcatgtgcatcttcc	11	12	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20361549	T	T	20361549	3	4	44	1	0	0	0	0	1	0	0	0	8821	1357	47	2	823	2	LGALS9B	17	20361549	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	3273316	20361549	60833661	239	49770											
MAP2K3	5606	broad.mit.edu	37	chr17	21201650	21201650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacccttgtgggccagggcCtgatggctcatgggagtgca	16	11	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21201650	A	A	21201650	1	1	44	0	1	0	0	0	0	0	0	0	9330	696	24	2		2	MAP2K3	17	21201650	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	840101	21201650	59993560	240	49771											
SLFN11	91607	broad.mit.edu	37	chr17	33690515	33690515	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaagatttaacaaaaatGtaaaaacaccttccttgttg	4	9	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33690515	T	T	33690515	4	4	44	1	0	0	0	0	0	1	0	0	14847	1372	48	3	2409	3	SLFN11	17	33690515	Nonsense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	12488865	33690515	47504695	241	49772											
CCL3	6348	broad.mit.edu	37	chr17	34417410	34417410	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggagacctgcatgattcTgagcaggtgacggaatgtgg	16	6	1	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34417410	G	G	34417410	1	3	44	0	1	0	0	0	0	0	0	0	2929	1595	55	5		5	CCL3	17	34417410	5'UTR	SNP	T	TCGA-17-Z011-01A-01W-0746-08	726895	34417410	46777800	242	49773											
VPS25	84313	broad.mit.edu	37	chr17	40925964	40925965	+	Intron	INS	-	C	C													ctttcacacatgcccagacgINScccccccgcgccagccccct							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40925965	C	C	40925964	6	5	44	0	1	1	1	0	0	0	0	0	17323	1102	38	0		0	VPS25	17	40925964	Intron	INS	-	TCGA-17-Z011-01A-01W-0746-08	6508554	40925964	40269246	243	49774											
RNF213	57674	broad.mit.edu	37	chr17	78350036	78350036	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtatttggtgtcagtgtAtgtctaagagcaattcacac	10	6	3	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78350036	G	G	78350036	1	3	44	0	1	0	0	0	0	0	0	0	13588	464	16	5		5	RNF213	17	78350036	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	37424072	78350036	2845174	244	49775											
PSMA8	143471	broad.mit.edu	37	chr18	23750811	23750811	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcaatttctggaaaaaacGtgtcactttcaaagtcttgc	6	8	5	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23750811	A	A	23750811	1	1	44	0	1	0	0	0	0	0	0	0	12779	1160	40	4		4	PSMA8	18	23750811	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08		23750811	54326437	245	49776											
SETBP1	26040	broad.mit.edu	37	chr18	42532248	42532248	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accttctaccacgagaatccAtatcccagcatttttcggat	5	13	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42532248	T	T	42532248	2	4	44	1	0	0	0	0	0	0	0	1	14242	204	8	5		5	SETBP1	18	42532248	Silent	SNP	A	TCGA-17-Z011-01A-01W-0746-08	18781437	42532248	35545000	246	49777											
KIAA1632	57724	broad.mit.edu	37	chr18	43480873	43480873	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctcattgtaaaaatgctGacaaggaagccactccaggt	8	10	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43480873	A	A	43480873	1	1	44	0	1	0	0	0	0	0	0	0	8319	1305	45	4		4	KIAA1632	18	43480873	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	948625	43480873	34596375	247	49778											
CCBE1	147372	broad.mit.edu	37	chr18	57103021	57103021	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagtggagagacgtcaggAgaagagaagagaaaaatgta	16	2	1	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57103021	G	G	57103021	1	3	44	0	1	0	0	0	0	0	0	0	2757	319	11	5		5	CCBE1	18	57103021	3'UTR	SNP	A	TCGA-17-Z011-01A-01W-0746-08	13622148	57103021	20974227	248	49779											
OLFM2	93145	broad.mit.edu	37	chr19	9967463	9967463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaggccctgaccccagGggtgggcgcagtcactcacc	12	18	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9967463	T	T	9967463	1	4	44	0	1	0	0	0	0	0	0	0	10948	1247	43	2		2	OLFM2	19	9967463	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08		9967463	49161520	249	49780											
KEAP1	9817	broad.mit.edu	37	chr19	10610279	10610279	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acttctcgcccatggagatgGaggccgtgtaggcgaattca	13	10	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610279	A	A	10610279	3	1	44	1	0	0	0	0	1	0	0	0	8211	1174	41	4	1463	4	KEAP1	19	10610279	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	642816	10610279	48518704	250	49781											
UNC13A	23025	broad.mit.edu	37	chr19	17743758	17743758	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcacagctggaagggtctGccaccctctgtctcggcaga	13	13	3	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17743758	A	A	17743758	1	1	44	0	1	0	0	0	0	0	0	0	17110	1334	46	4		4	UNC13A	19	17743758	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	7133479	17743758	41385225	251	49782											
ZNF98	148198	broad.mit.edu	37	chr19	22586297	22586297	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaattctaaggccacatcCctaaatgtcaacactccctg	6	13	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22586297	T	T	22586297	2	4	44	1	0	0	0	0	0	0	0	1	18332	622	22	4		4	ZNF98	19	22586297	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08	4842539	22586297	36542686	252	49783											
SLC7A9	11136	broad.mit.edu	37	chr19	33353018	33353018	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgggacatctcaggacaCctcaccatccatcataggcc	7	16	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33353018	T	T	33353018	1	4	44	0	1	0	0	0	0	0	0	0	14819	522	18	4		4	SLC7A9	19	33353018	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	10766721	33353018	25775965	253	49784											
MLL4	9757	broad.mit.edu	37	chr19	36221205	36221205	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggcatccacctcccccaCcaatgcagccacctcacttt	4	21	1	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36221205	T	T	36221205	1	4	44	0	1	0	0	0	0	0	0	0	9716	522	18	4		4	MLL4	19	36221205	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2868187	36221205	22907778	254	49785											
FCGBP	8857	broad.mit.edu	37	chr19	40366230	40366230	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtggcggagatcacgccGcaggcgtccgggccgccgaa	17	14	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40366230	A	A	40366230	2	1	44	1	0	0	0	0	0	0	0	1	5835	1079	38	4		4	FCGBP	19	40366230	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4145025	40366230	18762753	255	49786											
MEGF8	1954	broad.mit.edu	37	chr19	42856543	42856543	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgacctgcctgaacacgccCctcagctacgagtgtcactg	10	16	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42856543	T	T	42856543	2	4	44	1	0	0	0	0	0	0	0	1	9556	610	22	4		4	MEGF8	19	42856543	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2490313	42856543	16272440	256	49787											
PSG6	5675	broad.mit.edu	37	chr19	43584665	43584665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggtttctagggctgagCttctctgagagtatctcagg	13	7	3	3	rs114858011	by1000genomes	TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43584665	A	A	43584665	1	1	44	0	1	0	0	0	0	0	0	0	12765	812	28	3		3	PSG6	19	43584665	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	728122	43584665	15544318	257	49788											
ZNF45	7596	broad.mit.edu	37	chr19	44423961	44423961	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaggtgtcagattcttaAgagaccatattcaactttat	8	6	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44423961	T	T	44423961	1	4	44	0	1	0	0	0	0	0	0	0	18048	87	3	5		5	ZNF45	19	44423961	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	839296	44423961	14705022	258	49789											
PIH1D1	55011	broad.mit.edu	37	chr19	49949767	49949767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagacagagtccaggccCcgccaatgtcccagcttccc	11	16	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49949767	A	A	49949767	1	1	44	0	1	0	0	0	0	0	0	0	12001	638	22	2		2	PIH1D1	19	49949767	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	5525806	49949767	9179216	259	49790											
PRKCG	5582	broad.mit.edu	37	chr19	54386562	54386562	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagagaggcgcgggggagCccggggcggggggtgtggca	24	10	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54386562	G	G	54386562	1	3	44	0	1	0	0	0	0	0	0	0	12618	754	26	4		4	PRKCG	19	54386562	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	4436795	54386562	4742421	260	49791											
PTPRH	5794	broad.mit.edu	37	chr19	55696925	55696925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatccagccactgccgaaGcatcctccagaaagccagca	8	16	0	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55696925	T	T	55696925	3	4	44	1	0	0	0	0	1	0	0	0	12911	971	34	3	352	3	PTPRH	19	55696925	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1310363	55696925	3432058	261	49792											
ZNF543	125919	broad.mit.edu	37	chr19	57839964	57839964	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggaaaagctttttgcgaGagtgcagacctcattcaaca	10	8	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57839964	T	T	57839964	3	4	44	1	0	0	0	0	1	0	0	0	18103	933	33	3	1148	3	ZNF543	19	57839964	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2143039	57839964	1289019	262	49793											
ZCCHC3	85364	broad.mit.edu	37	chr20	279019	279019	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctcttccggaacgagacGgtggacgtggaggacattgt	14	9	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	279019	T	T	279019	2	4	44	1	0	0	0	0	0	0	0	1	17715	1103	39	1		1	ZCCHC3	20	279019	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08		279019	62746501	263	49794											
NCOA5	57727	broad.mit.edu	37	chr20	44694064	44694064	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttgcttgagatcacgtcaGaagttgccagtagcacagta	10	9	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44694064	C	C	44694064	1	2	44	0	1	0	0	0	0	0	0	0	10327	957	33	4		4	NCOA5	20	44694064	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	44415045	44694064	18331456	264	49795			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44695708	44695708	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttactttgtctgtttgttGaccacaatcacagaacaatc	5	10	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44695708	A	A	44695708	2	1	44	1	0	0	0	0	0	0	0	1	10327	1277	45	4		4	NCOA5	20	44695708	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1644	44695708	18329812	265	49796			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44695759	44695759	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcggcatcaaagcgtctctgGatttcctcaaaatattgacg	8	10	3	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44695759	A	A	44695759	2	1	44	1	0	0	0	0	0	0	0	1	10327	1164	41	4		4	NCOA5	20	44695759	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	51	44695759	18329761	266	49797			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44698729	44698729	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcagcacatctatcacttGacagtcaccagaaataaaag	6	11	3	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44698729	C	C	44698729	1	2	44	0	1	0	0	0	0	0	0	0	10327	1305	45	4		4	NCOA5	20	44698729	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	2970	44698729	18326791	267	49798			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44698740	44698740	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatcacttgacagtcaccaGaaataaaaggctgataaaat	6	8	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44698740	A	A	44698740	1	1	44	0	1	0	0	0	0	0	0	0	10327	957	33	4		4	NCOA5	20	44698740	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	11	44698740	18326780	268	49799			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44698831	44698831	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactcaggaaaaaacaagcaGagtaactacgtatgtacctg	8	8	1	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44698831	A	A	44698831	1	1	44	0	1	0	0	0	0	0	0	0	10327	957	33	4		4	NCOA5	20	44698831	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	91	44698831	18326689	269	49800			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44698859	44698859	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgtatgtacctgtacatagGatctcgggagtctctcatgt	10	9	3	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44698859	A	A	44698859	3	1	44	1	0	0	0	0	1	0	0	0	10327	1174	41	4	1408	4	NCOA5	20	44698859	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	28	44698859	18326661	270	49801			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44698943	44698943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctagagtctcttagatcacGaaagtctctaagatccctca	6	12	4	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44698943	A	A	44698943	3	1	44	1	0	0	0	0	1	0	0	0	10327	1058	37	4	1492	4	NCOA5	20	44698943	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	84	44698943	18326577	271	49802			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44699180	44699180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagccatatggatccctgtGggaggtagcaagaaaatgct	12	7	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44699180	A	A	44699180	1	1	44	0	1	0	0	0	0	0	0	0	10327	1363	47	4		4	NCOA5	20	44699180	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	237	44699180	18326340	272	49803			2	46		10	10	5146	G		3.351146e-18
NCOA5	57727	broad.mit.edu	37	chr20	44699209	44699209	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagaaaatgctaagacaaaGaaattgaaagtagccaaccc	7	8	0	4			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44699209	A	A	44699209	1	1	44	0	1	0	0	0	0	0	0	0	10327	957	33	4		4	NCOA5	20	44699209	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	29	44699209	18326311	273	49804			2	46		10	10	5146	G		3.351146e-18
FAM65C	140876	broad.mit.edu	37	chr20	49225423	49225423	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctggcggggagccctgaGgattgaccccagagagtggc	17	11	0	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49225423	A	A	49225423	1	1	44	0	1	0	0	0	0	0	0	0	5652	1015	35	4		4	FAM65C	20	49225423	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4526214	49225423	13800097	274	49805											
TPD52L2	7165	broad.mit.edu	37	chr20	62505074	62505074	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagccaaggagaggcaCtgtggagagctcaagaggag	17	8	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62505074	T	T	62505074	2	4	44	1	0	0	0	0	0	0	0	1	16523	564	20	4		4	TPD52L2	20	62505074	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08	13279651	62505074	520446	275	49806											
GRIK1	2897	broad.mit.edu	37	chr21	30953835	30953835	+	Frame_Shift_Del	DEL	G	-	-													tgagtcagggttgcatgggtGggggttataccactcgtagg							TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30953835	-	-	30953835	7	5	44	1	0	1	0	1	0	0	0	0	6839	1348	47	0	1114	0	GRIK1	21	30953835	Frame_Shift_Del	DEL	G	TCGA-17-Z011-01A-01W-0746-08		30953835	17176060	276	49807											
UBASH3A	53347	broad.mit.edu	37	chr21	43863572	43863572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaacagcccctggggcttGgggaattatctctgagatgg	14	8	1	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43863572	A	A	43863572	1	1	44	0	1	0	0	0	0	0	0	0	16965	1363	47	4		4	UBASH3A	21	43863572	Intron	SNP	G	TCGA-17-Z011-01A-01W-0746-08	12909737	43863572	4266323	277	49808											
COL6A2	1292	broad.mit.edu	37	chr21	47546167	47546167	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggtgagcgtgtgggcgCggggcagtcggccgaggagc	22	11	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47546167	T	T	47546167	1	4	44	0	1	0	0	0	0	0	0	0	3732	783	27	4		4	COL6A2	21	47546167	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	3682595	47546167	583728	278	49809											
XKR3	150165	broad.mit.edu	37	chr22	17280536	17280536	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaataaattcatagaaactCaatcttataaaaaatttagt	2	5	3	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17280536	A	A	17280536	1	1	44	0	1	0	0	0	0	0	0	0	17559	841	29	3		3	XKR3	22	17280536	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08		17280536	34024030	279	49810											
CECR1	51816	broad.mit.edu	37	chr22	17690382	17690382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgattttgagcgtcatgagCctctcattggccagctcctc	10	13	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17690382	A	A	17690382	3	1	44	1	0	0	0	0	1	0	0	0	3235	738	26	3	1419	3	CECR1	22	17690382	Missense_Mutation	SNP	C	TCGA-17-Z011-01A-01W-0746-08	409846	17690382	33614184	280	49811											
MYH9	4627	broad.mit.edu	37	chr22	36737457	36737457	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgtgatggcatagaTgtgagggggcatctcgtgcc	17	7	2	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36737457	A	A	36737457	3	1	44	1	0	0	0	0	1	0	0	0	10136	1464	51	5	5590	5	MYH9	22	36737457	Missense_Mutation	SNP	T	TCGA-17-Z011-01A-01W-0746-08	19047075	36737457	14567109	281	49812											
IL2RB	3560	broad.mit.edu	37	chr22	37539522	37539522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatccagaatatgagatccCaccatcctaagattctgcag	8	11	1	3			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37539522	A	A	37539522	1	1	44	0	1	0	0	0	0	0	0	0	7757	609	21	2		2	IL2RB	22	37539522	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	802065	37539522	13765044	282	49813											
PDGFB	5155	broad.mit.edu	37	chr22	39623311	39623311	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcaccatgttggccaggCtggtcttgaactcctgacct	10	12	2	2			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39623311	T	T	39623311	1	4	44	0	1	0	0	0	0	0	0	0	11752	812	28	4		4	PDGFB	22	39623311	Intron	SNP	C	TCGA-17-Z011-01A-01W-0746-08	2083789	39623311	11681255	283	49814											
MKL1	57591	broad.mit.edu	37	chr22	40819642	40819642	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaggaggctgctctgccagGaaaagcatttctctggaatc	12	9	2	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40819642	A	A	40819642	2	1	44	1	0	0	0	0	0	0	0	1	9694	1165	41	4		4	MKL1	22	40819642	Silent	SNP	G	TCGA-17-Z011-01A-01W-0746-08	1196331	40819642	10484924	284	49815											
POLDIP3	84271	broad.mit.edu	37	chr22	42988052	42988052	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaccccaggatggaccagTcgagctcgcttgagggcccc	13	15	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42988052	A	A	42988052	2	1	44	1	0	0	0	0	0	0	0	1	12290	1654	58	5		5	POLDIP3	22	42988052	Silent	SNP	T	TCGA-17-Z011-01A-01W-0746-08	2168410	42988052	8316514	285	49816											
GRAMD4	23151	broad.mit.edu	37	chr22	47031075	47031075	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccactcctgtcctggggAaccgtgtcctccctgccccc	10	19	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47031075	G	G	47031075	1	3	44	0	1	0	0	0	0	0	0	0	6818	261	9	5		5	GRAMD4	22	47031075	Intron	SNP	A	TCGA-17-Z011-01A-01W-0746-08	4043023	47031075	4273491	286	49817											
XG	7499	broad.mit.edu	37	chrX	2712625	2712625	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgctacccgcccaggccCaggccacggccgcctgcagg	14	19	0	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2712625	A	A	2712625	2	1	44	1	0	0	0	0	0	0	0	1	17554	581	21	2		2	XG	23	2712625	Silent	SNP	C	TCGA-17-Z011-01A-01W-0746-08		2712625	152557935	287	49818											
STS	412	broad.mit.edu	37	chrX	7177623	7177623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtctggggctactccacGtgcctctaggcgtttttttc	10	11	2	0			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7177623	T	T	7177623	3	4	44	1	0	0	0	0	1	0	0	0	15450	1145	40	3	649	3	STS	23	7177623	Missense_Mutation	SNP	G	TCGA-17-Z011-01A-01W-0746-08	4464998	7177623	148092937	288	49819											
BTK	695	broad.mit.edu	37	chrX	100609683	100609683	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaacagtttcgagctgcCtgtagtgcaaacagagacca	9	11	0	1			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100609683	A	A	100609683	5	1	44	1	0	0	0	0	0	0	1	0	1567	695	24	2	429	2	BTK	23	100609683	Splice_Site	SNP	C	TCGA-17-Z011-01A-01W-0746-08	93432060	100609683	54660877	289	49820											
SPEN	23013	broad.mit.edu	37	chr1	16261546	16261546	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctcacccaggggatcaaCacaccccctgtgctggttca	9	15	3	0	rs111293962	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16261546	T	T	16261546	2	4	45	1	0	0	0	0	0	0	0	1	15156	477	17	4		4	SPEN	1	16261546	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08		16261546	232989075	1	49821											
LDLRAD2	401944	broad.mit.edu	37	chr1	22150788	22150788	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagaggaagggccaggtgCcaggacctacctgaagacaa	16	9	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22150788	A	A	22150788	1	1	45	0	1	0	0	0	0	0	0	0	8778	754	26	3		3	LDLRAD2	1	22150788	3'UTR	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5889242	22150788	227099833	2	49822											
ID3	3399	broad.mit.edu	37	chr1	23885479	23885479	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaagctccttttgtcgttgGagatgacaagttccggagtg	12	7	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23885479	C	C	23885479	3	2	45	1	0	0	0	0	1	0	0	0	7561	1174	41	4	31	4	ID3	1	23885479	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1734691	23885479	225365142	3	49823											
CLIC4	25932	broad.mit.edu	37	chr1	25167433	25167433	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagactcaccaagtaaaatcGcgtttgtaaaagagatgtct	8	7	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25167433	A	A	25167433	1	1	45	0	1	0	0	0	0	0	0	0	3560	1102	38	4		4	CLIC4	1	25167433	3'UTR	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1281954	25167433	224083188	4	49824											
TRIM63	84676	broad.mit.edu	37	chr1	26384907	26384907	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaggtggctcccccaggctCgtccagggactggatggcag	16	12	0	0	rs61749355	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26384907	T	T	26384907	3	4	45	1	0	0	0	0	1	0	0	0	16663	893	31	4	276	4	TRIM63	1	26384907	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1217474	26384907	222865714	5	49825											
KIAA0494	9813	broad.mit.edu	37	chr1	47162324	47162324	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagtcaacagagaaatctGaacaaaaaagagtaacaaac	7	6	2	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47162324	A	A	47162324	1	1	45	0	1	0	0	0	0	0	0	0	8249	1305	45	4		4	KIAA0494	1	47162324	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	20777417	47162324	202088297	6	49826											
USP24	23358	broad.mit.edu	37	chr1	55600058	55600058	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatacgttacatacgagaGccatcactacaccagggagg	9	11	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55600058	A	A	55600058	3	1	45	1	0	0	0	0	1	0	0	0	17181	971	34	4	4792	4	USP24	1	55600058	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	8437734	55600058	193650563	7	49827											
LRRC7	57554	broad.mit.edu	37	chr1	70484411	70484411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcttctagtccaaagccCttatccctttacaaacagaa	4	12	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70484411	A	A	70484411	3	1	45	1	0	0	0	0	1	0	0	0	9107	681	24	2	1266	2	LRRC7	1	70484411	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	14884353	70484411	178766210	8	49828											
LRRC7	57554	broad.mit.edu	37	chr1	70505059	70505059	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgataggtacggcagaccCccatataggggagggctgga	15	9	0	2	rs149679977	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70505059	T	T	70505059	2	4	45	1	0	0	0	0	0	0	0	1	9107	610	22	4		4	LRRC7	1	70505059	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	20648	70505059	178745562	9	49829											
LRRIQ3	127255	broad.mit.edu	37	chr1	74507233	74507233	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcatattttttctgattcAaatgttcattaacagctact	4	7	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74507233	C	C	74507233	3	2	45	1	0	0	0	0	1	0	0	0	9117	131	5	5	500	5	LRRIQ3	1	74507233	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	4002174	74507233	174743388	10	49830											
DDAH1	23576	broad.mit.edu	37	chr1	85983968	85983969	+	Intron	INS	-	TT	TT													gggcattaaacaacacagacINSattattttacagttcagcag					rs146664901		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	85983969	TT	TT	85983968	6	5	45	0	1	1	1	0	0	0	0	0	4354	493	17	0		0	DDAH1	1	85983968	Intron	INS	-	TCGA-17-Z012-01A-01W-0746-08	11476735	85983968	163266653	11	49831											
CLCA1	1179	broad.mit.edu	37	chr1	86959934	86959934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgactgtcacgtcccGtgcgtccaatgctaccctgc	9	17	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86959934	T	T	86959934	3	4	45	1	0	0	0	0	1	0	0	0	3488	1145	40	3	1787	3	CLCA1	1	86959934	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	975966	86959934	162290687	12	49832											
ZNF644	84146	broad.mit.edu	37	chr1	91405078	91405078	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatgaatcaacacatgaTgatgaatgcaagtactccgt	7	9	1	4	rs142729817		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91405078	G	G	91405078	2	3	45	1	0	0	0	0	0	0	0	1	18187	1451	51	5		5	ZNF644	1	91405078	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	4445144	91405078	157845543	13	49833											
CCDC18	343099	broad.mit.edu	37	chr1	93646450	93646450	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatttgggtggtgagcgactGcgccttggcgtggggaaacc	18	8	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93646450	C	C	93646450	1	2	45	0	1	0	0	0	0	0	0	0	2821	1334	46	4		4	CCDC18	1	93646450	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2241372	93646450	155604171	14	49834											
PALMD	54873	broad.mit.edu	37	chr1	100133241	100133241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctagatggaatcagcaGcggaaaagaacaggaagaga	13	6	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100133241	T	T	100133241	3	4	45	1	0	0	0	0	1	0	0	0	11505	971	34	3	180	3	PALMD	1	100133241	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	6486791	100133241	149117380	15	49835											
AMY2B	280	broad.mit.edu	37	chr1	104116920	104116920	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccaattaaaagcagtgaCtactttggaaatggccgggt	12	7	0	1	rs12131520	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104116920	T	T	104116920	2	4	45	1	0	0	0	0	0	0	0	1	595	564	20	4		4	AMY2B	1	104116920	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3983679	104116920	145133701	16	49836											
EPS8L3	79574	broad.mit.edu	37	chr1	110294292	110294292	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacccgagagggtgactggCcctgggtcccaggggtcccc	16	14	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110294292	T	T	110294292	3	4	45	1	0	0	0	0	1	0	0	0	5239	739	26	4	250	4	EPS8L3	1	110294292	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6177372	110294292	138956329	17	49837											
VANGL1	81839	broad.mit.edu	37	chr1	116206407	116206407	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctggattgcaaacgctaCctgggcctcaccgtcgcctc	12	15	1	0	rs41275546	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116206407	T	T	116206407	2	4	45	1	0	0	0	0	0	0	0	1	17246	518	18	4		4	VANGL1	1	116206407	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5912115	116206407	133044214	18	49838											
REG4	83998	broad.mit.edu	37	chr1	120337310	120337310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctccaagttaaaaagtcTgtaagaaaataaacagatat	6	6	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120337310	A	A	120337310	1	1	45	0	1	0	0	0	0	0	0	0	13322	1594	55	5		5	REG4	1	120337310	Intron	SNP	T	TCGA-17-Z012-01A-01W-0746-08	4130903	120337310	128913311	19	49839											
GJA5	2702	broad.mit.edu	37	chr1	147231026	147231026	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctctcggcctcccgtagCttgcgcttctcctgcatgcg	10	18	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147231026	G	G	147231026	3	3	45	1	0	0	0	0	1	0	0	0	6468	796	28	4	759	4	GJA5	1	147231026	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	26893716	147231026	102019595	20	49840											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858798	149858798	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctggccatccgcaacgacGaggaactgaacaagctgctg	12	12	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149858798	A	A	149858798	3	1	45	1	0	0	0	0	1	0	0	0	7245	1059	37	4	276	4	HIST2H2AC	1	149858798	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2627772	149858798	99391823	21	49841											
VPS45	11311	broad.mit.edu	37	chr1	150082663	150082663	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagccacctatgaagaggctCtaacagtttataacctgaac	8	10	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150082663	T	T	150082663	2	4	45	1	0	0	0	0	0	0	0	1	17338	912	32	4		4	VPS45	1	150082663	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	223865	150082663	99167958	22	49842											
LINGO4	339398	broad.mit.edu	37	chr1	151773964	151773964	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggtttgcaggtgaagtgcCctggaggcaggatgtctgaa	16	7	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151773964	G	G	151773964	3	3	45	1	0	0	0	0	1	0	0	0	8890	623	22	4	568	4	LINGO4	1	151773964	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1691301	151773964	97476657	23	49843											
FLG	2312	broad.mit.edu	37	chr1	152275372	152275372	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggaattgtaactaacacttCcgtgctgagagtgtctaaac	9	8	1	1	rs149094882		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152275372	T	T	152275372	3	4	45	1	0	0	0	0	1	0	0	0	5979	855	30	4	199	4	FLG	1	152275372	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	501408	152275372	96975249	24	49844											
FLG2	388698	broad.mit.edu	37	chr1	152329506	152329506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaattcttgactgagtagaGtttgattcatgcccactagt	8	8	2	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152329506	T	T	152329506	3	4	45	1	0	0	0	0	1	0	0	0	5980	1020	36	3	6423	3	FLG2	1	152329506	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	54134	152329506	96921115	25	49845											
KPRP	448834	broad.mit.edu	37	chr1	152732787	152732787	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagacccagggctcctatggGagcttcactgaacagcaccg	11	14	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152732787	A	A	152732787	2	1	45	1	0	0	0	0	0	0	0	1	8507	1161	41	4		4	KPRP	1	152732787	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	403281	152732787	96517834	26	49846											
S100A3	6274	broad.mit.edu	37	chr1	153520845	153520845	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccaggtggccagctccttCtgcagcagctccttgagctc	11	15	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153520845	T	T	153520845	2	4	45	1	0	0	0	0	0	0	0	1	13890	912	32	4		4	S100A3	1	153520845	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	788058	153520845	95729776	27	49847											
GATAD2B	57459	broad.mit.edu	37	chr1	153788945	153788945	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcagcatcagtcatggcGctggggctaggaagtggcga	17	8	2	0	rs140272058	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153788945	A	A	153788945	2	1	45	1	0	0	0	0	0	0	0	1	6323	1078	38	4		4	GATAD2B	1	153788945	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	268100	153788945	95461676	28	49848											
UBAP2L	9898	broad.mit.edu	37	chr1	154213988	154213988	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actatttttctttattctcaGgtgcatggaggactgcaaca	8	8	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154213988	A	A	154213988	5	1	45	1	0	0	0	0	0	0	1	0	16964	1014	35	4	733	4	UBAP2L	1	154213988	Splice_Site	SNP	G	TCGA-17-Z012-01A-01W-0746-08	425043	154213988	95036633	29	49849											
ZBTB7B	51043	broad.mit.edu	37	chr1	154988743	154988743	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagcacacgggagagcgccCctactcatgcccgcactgcc	11	17	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154988743	G	G	154988743	3	3	45	1	0	0	0	0	1	0	0	0	17680	623	22	4	1208	4	ZBTB7B	1	154988743	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	774755	154988743	94261878	30	49850											
THBS3	7059	broad.mit.edu	37	chr1	155167915	155167915	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgataggcccgaaaatccGtaagcgttacctctgcactt	8	12	2	1	rs149484793	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155167915	A	A	155167915	3	1	45	1	0	0	0	0	1	0	0	0	15978	1145	40	4	723	4	THBS3	1	155167915	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	179172	155167915	94082706	31	49851											
GBA	2629	broad.mit.edu	37	chr1	155209714	155209714	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctggatgggccccatactCagctccatccgtcgcccact	9	18	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155209714	G	G	155209714	2	3	45	1	0	0	0	0	0	0	0	1	6328	813	29	4		4	GBA	1	155209714	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	41799	155209714	94040907	32	49852											
GBA	2629	broad.mit.edu	37	chr1	155210414	155210414	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctccccactgccttgactCactcacctgatgcccacgac	5	20	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155210414	T	T	155210414	1	4	45	0	1	0	0	0	0	0	0	0	6328	841	29	4		4	GBA	1	155210414	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	700	155210414	94040207	33	49853											
RUSC1	23623	broad.mit.edu	37	chr1	155291648	155291648	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcctgcacttgtcccgCcgtcctgagctacaggaggg	14	14	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155291648	T	T	155291648	2	4	45	1	0	0	0	0	0	0	0	1	13861	726	26	4		4	RUSC1	1	155291648	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	81234	155291648	93958973	34	49854											
APOA1BP	128240	broad.mit.edu	37	chr1	156562007	156562007	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagccatcgccaaggtcagTggcacaactctcgacctttg	9	14	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156562007	C	C	156562007	1	2	45	0	1	0	0	0	0	0	0	0	783	1711	59	5		5	APOA1BP	1	156562007	Intron	SNP	T	TCGA-17-Z012-01A-01W-0746-08	1270359	156562007	92688614	35	49855											
BCAN	63827	broad.mit.edu	37	chr1	156622617	156622617	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccagcagggacctcagtGcaggcccagccagtgctgcc	13	17	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156622617	T	T	156622617	2	4	45	1	0	0	0	0	0	0	0	1	1350	1306	46	3		3	BCAN	1	156622617	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	60610	156622617	92628004	36	49856											
NES	10763	broad.mit.edu	37	chr1	156640981	156640981	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacctcctctgtggcattcAgctctccctgctctaccacc	6	18	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156640981	T	T	156640981	3	4	45	1	0	0	0	0	1	0	0	0	10432	188	7	5	1870	5	NES	1	156640981	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	18364	156640981	92609640	37	49857											
SPTA1	6708	broad.mit.edu	37	chr1	158622358	158622358	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatccattccagcatgtctcCtgcctcataggccaataaaa	5	13	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158622358	G	G	158622358	3	3	45	1	0	0	0	0	1	0	0	0	15234	690	24	4	4105	4	SPTA1	1	158622358	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1981377	158622358	90628263	38	49858											
SPTA1	6708	broad.mit.edu	37	chr1	158627405	158627405	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaagatcattttgtcgcctAgcagctcgagcacggagaga	11	10	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158627405	T	T	158627405	2	4	45	1	0	0	0	0	0	0	0	1	15234	407	15	5		5	SPTA1	1	158627405	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	5047	158627405	90623216	39	49859											
OR6K2	81448	broad.mit.edu	37	chr1	158669912	158669912	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcactgggaggaagtcacaGaagatatgttcaaggtgatt	13	5	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158669912	A	A	158669912	2	1	45	1	0	0	0	0	0	0	0	1	11296	933	33	4		4	OR6K2	1	158669912	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	42507	158669912	90580709	40	49860											
OR6N2	81442	broad.mit.edu	37	chr1	158746557	158746557	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccttgttacgaagactgTagataattggattgaccatt	8	6	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158746557	A	A	158746557	3	1	45	1	0	0	0	0	1	0	0	0	11301	1638	57	5	87	5	OR6N2	1	158746557	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	76645	158746557	90504064	41	49861											
VANGL2	57216	broad.mit.edu	37	chr1	160394996	160394996	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtggacattggtgagcgAggagccggtgaccaacggcc	16	10	0	2	rs143298058		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160394996	C	C	160394996	3	2	45	1	0	0	0	0	1	0	0	0	17247	304	11	5	1420	5	VANGL2	1	160394996	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1648439	160394996	88855625	42	49862											
ARHGAP30	257106	broad.mit.edu	37	chr1	161029432	161029432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatgttggaggagacccCtgagaggcggtagatcccat	15	9	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161029432	A	A	161029432	3	1	45	1	0	0	0	0	1	0	0	0	881	681	24	2	3177	2	ARHGAP30	1	161029432	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	634436	161029432	88221189	43	49863											
TOMM40L	84134	broad.mit.edu	37	chr1	161198297	161198297	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagggcaaatgaacaggtGagacctctgatctcattccc	9	12	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161198297	A	A	161198297	1	1	45	0	1	0	0	0	0	0	0	0	16482	1305	45	4		4	TOMM40L	1	161198297	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	168865	161198297	88052324	44	49864											
PBX1	5087	broad.mit.edu	37	chr1	164815883	164815883	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctcccctacagaaggcccTggcagtgttcactctgatac	8	15	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164815883	C	C	164815883	2	2	45	1	0	0	0	0	0	0	0	1	11586	1567	55	5		5	PBX1	1	164815883	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	3617586	164815883	84434738	45	49865											
ILDR2	387597	broad.mit.edu	37	chr1	166896326	166896326	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctctcatccttctggcTggatcaaactgagccagctc	8	15	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166896326	A	A	166896326	2	1	45	1	0	0	0	0	0	0	0	1	7780	1567	55	5		5	ILDR2	1	166896326	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	2080443	166896326	82354295	46	49866											
DCAF6	55827	broad.mit.edu	37	chr1	168014232	168014232	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtggggttccagaagaAtctgcttcatctgaaaaagc	10	8	4	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168014232	G	G	168014232	2	3	45	1	0	0	0	0	0	0	0	1	4307	98	4	5		5	DCAF6	1	168014232	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1117906	168014232	81236389	47	49867											
PIGC	5279	broad.mit.edu	37	chr1	172411045	172411045	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatggacagtaggcctcccaCggctgaaaatgcaaaaagca	10	10	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172411045	G	G	172411045	3	3	45	1	0	0	0	0	1	0	0	0	11981	536	19	4	179	4	PIGC	1	172411045	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4396813	172411045	76839576	48	49868											
ASTN1	460	broad.mit.edu	37	chr1	176863786	176863786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcaggggtgtcagggCtggatgtcacatgacacagg	16	9	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176863786	A	A	176863786	3	1	45	1	0	0	0	0	1	0	0	0	1068	797	28	3	1064	3	ASTN1	1	176863786	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4452741	176863786	72386835	49	49869											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179833929	179833929	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagaagctatttgttttggCccagttttttgtttaaggtt	9	4	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179833929	T	T	179833929	1	4	45	0	1	0	0	0	0	0	0	0	16497	739	26	4		4	TOR1AIP2	1	179833929	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2970143	179833929	69416692	50	49870											
C1orf25	81627	broad.mit.edu	37	chr1	185125793	185125793	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacctggacctgggccacctCcacctcctccttctccaggg	9	19	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185125793	A	A	185125793	4	1	45	1	0	0	0	0	0	1	0	0	2056	864	30	3	2209	3	C1orf25	1	185125793	Nonsense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5291864	185125793	64124828	51	49871											
HMCN1	83872	broad.mit.edu	37	chr1	185951496	185951496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatcccattccagaacGtcggtggattaagaattcag	10	8	1	2	rs140928144	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185951496	T	T	185951496	3	4	45	1	0	0	0	0	1	0	0	0	7287	1145	40	3	2835	3	HMCN1	1	185951496	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	825703	185951496	63299125	52	49872											
FAM5C	339479	broad.mit.edu	37	chr1	190067563	190067563	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacttgatgcgacttctcAggtagatgtgtactgtctca	11	8	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190067563	C	C	190067563	3	2	45	1	0	0	0	0	1	0	0	0	5645	188	7	5	418	5	FAM5C	1	190067563	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	4116067	190067563	59183058	53	49873											
RNPEP	6051	broad.mit.edu	37	chr1	201958634	201958634	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagctttggccatcggagatCtggtttcggctgaagttgga	14	7	1	2	rs147777734	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201958634	T	T	201958634	2	4	45	1	0	0	0	0	0	0	0	1	13620	912	32	4		4	RNPEP	1	201958634	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	11891071	201958634	47291987	54	49874											
PROX1	5629	broad.mit.edu	37	chr1	214171034	214171034	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctcaggtcttcccacctCtccagatcccccaggccaga	6	19	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214171034	T	T	214171034	3	4	45	1	0	0	0	0	1	0	0	0	12666	913	32	4	1158	4	PROX1	1	214171034	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	12212400	214171034	35079587	55	49875											
HHIPL2	79802	broad.mit.edu	37	chr1	222717463	222717463	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtaatcagagcagaggccCgggagattccggagaggcgt	16	9	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222717463	G	G	222717463	2	3	45	1	0	0	0	0	0	0	0	1	7161	639	23	4		4	HHIPL2	1	222717463	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	8546429	222717463	26533158	56	49876											
CDC42BPA	8476	broad.mit.edu	37	chr1	227333373	227333373	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttctctgctacaaatgagCcttcgaataagatccttagc	7	10	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227333373	T	T	227333373	2	4	45	1	0	0	0	0	0	0	0	1	3102	738	26	4		4	CDC42BPA	1	227333373	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4615910	227333373	21917248	57	49877											
OBSCN	84033	broad.mit.edu	37	chr1	228487066	228487066	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagcccctgtggagtggagGaaaggccttgaggctctcag	16	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228487066	A	A	228487066	1	1	45	0	1	0	0	0	0	0	0	0	10907	1189	41	4		4	OBSCN	1	228487066	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1153693	228487066	20763555	58	49878											
URB2	9816	broad.mit.edu	37	chr1	229771573	229771573	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaccatgcacaagcacccAtaccggcctggttccgctgt	8	15	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	229771573	G	G	229771573	3	3	45	1	0	0	0	0	1	0	0	0	17151	217	8	5	1223	5	URB2	1	229771573	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1284507	229771573	19479048	59	49879											
TTC13	79573	broad.mit.edu	37	chr1	231052000	231052000	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccttggtctttaaggctggGaacttttgtgttcacggtga	12	8	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231052000	A	A	231052000	3	1	45	1	0	0	0	0	1	0	0	0	16806	1174	41	4	574	4	TTC13	1	231052000	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1280427	231052000	18198621	60	49880											
SIPA1L2	57568	broad.mit.edu	37	chr1	232607217	232607217	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagtaaaaggaagtgcccCaggctcctggaagacgatgg	15	8	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232607217	T	T	232607217	3	4	45	1	0	0	0	0	1	0	0	0	14443	594	21	4	3089	4	SIPA1L2	1	232607217	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1555217	232607217	16643404	61	49881											
NID1	4811	broad.mit.edu	37	chr1	236142361	236142361	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgtggggttggaaagCatccgtctccttggaaattg	13	8	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236142361	T	T	236142361	3	4	45	1	0	0	0	0	1	0	0	0	10509	710	25	4	195	4	NID1	1	236142361	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3535144	236142361	13108260	62	49882											
GPR137B	7107	broad.mit.edu	37	chr1	236341783	236341783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatttaacctgtgctgtGctggtaaagacgggaaattg	13	5	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236341783	T	T	236341783	2	4	45	1	0	0	0	0	0	0	0	1	6711	1306	46	3		3	GPR137B	1	236341783	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	199422	236341783	12908838	63	49883											
RYR2	6262	broad.mit.edu	37	chr1	237756780	237756780	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgctatcttcacagtactAttactcagtgagaatctttc	5	10	5	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237756780	C	C	237756780	3	2	45	1	0	0	0	0	1	0	0	0	13880	449	16	5	4410	5	RYR2	1	237756780	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1414997	237756780	11493841	64	49884											
RYR2	6262	broad.mit.edu	37	chr1	237886504	237886504	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgatgatacctcagatcCagagaagacggtagaaagag	12	7	1	7			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237886504	G	G	237886504	3	3	45	1	0	0	0	0	1	0	0	0	13880	594	21	4	10925	4	RYR2	1	237886504	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	129724	237886504	11364117	65	49885											
OPN3	23596	broad.mit.edu	37	chr1	241757786	241757786	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccattggttttgtcgctgtCgtcaactgacagtgattcat	9	10	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241757786	T	T	241757786	3	4	45	1	0	0	0	0	1	0	0	0	10975	884	31	4	59	4	OPN3	1	241757786	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3871282	241757786	7492835	66	49886											
ZNF669	79862	broad.mit.edu	37	chr1	247264334	247264334	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacatttataagctggatttCcactgtgcattatcatgtgt	7	7	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247264334	A	A	247264334	3	1	45	1	0	0	0	0	1	0	0	0	18203	855	30	3	661	3	ZNF669	1	247264334	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5506548	247264334	1986287	67	49887											
NLRP3	114548	broad.mit.edu	37	chr1	247587649	247587649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagaatcctcttcctcatgGacggcttcgatgagctgcaa	9	13	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247587649	T	T	247587649	3	4	45	1	0	0	0	0	1	0	0	0	10573	1174	41	3	914	3	NLRP3	1	247587649	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	323315	247587649	1662972	68	49888											
MYT1L	23040	broad.mit.edu	37	chr2	1893099	1893099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccagcagtcgccctcgcCcagctggaaacaccggttgt	11	16	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1893099	A	A	1893099	3	1	45	1	0	0	0	0	1	0	0	0	10201	623	22	2	1166	2	MYT1L	2	1893099	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08		1893099	241306274	69	49889											
TSSC1	7260	broad.mit.edu	37	chr2	3341780	3341780	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtaccttagaaaagccGcacttacttctgttgtagca	8	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3341780	A	A	3341780	1	1	45	0	1	0	0	0	0	0	0	0	16791	1102	38	4		4	TSSC1	2	3341780	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1448681	3341780	239857593	70	49890											
ALLC	55821	broad.mit.edu	37	chr2	3745030	3745030	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataactcgaattgaaattgaCacaaaatattttgaaggtaa	6	4	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3745030	G	G	3745030	3	3	45	1	0	0	0	0	1	0	0	0	534	477	17	4	868	4	ALLC	2	3745030	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	403250	3745030	239454343	71	49891											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10918799	10918799	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggagtccgtgctcaggtgCgtggcagtgatgccccggct	17	11	1	1	rs147144290	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10918799	T	T	10918799	1	4	45	0	1	0	0	0	0	0	0	0	1185	783	27	4		4	ATP6V1C2	2	10918799	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7173769	10918799	232280574	72	49892											
GREB1	9687	broad.mit.edu	37	chr2	11770205	11770205	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacctggaggccagctggaGagcatgcgactacccctcgt	12	14	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11770205	A	A	11770205	2	1	45	1	0	0	0	0	0	0	0	1	6826	933	33	4		4	GREB1	2	11770205	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	851406	11770205	231429168	73	49893											
RAD51AP2	729475	broad.mit.edu	37	chr2	17699262	17699262	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcggtgcacactgaaagcctCtctgtcatgcaggcctgcct	11	14	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17699262	T	T	17699262	3	4	45	1	0	0	0	0	1	0	0	0	13095	922	32	4	3070	4	RAD51AP2	2	17699262	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5929057	17699262	225500111	74	49894											
APOB	338	broad.mit.edu	37	chr2	21228305	21228305	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagattcaggcacggttatcTcaaaaaagggaatcaaggag	12	6	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21228305	A	A	21228305	3	1	45	1	0	0	0	0	1	0	0	0	787	1551	54	5	2272	5	APOB	2	21228305	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	3529043	21228305	221971068	75	49895											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27887160	27887160	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcactatccttggcaccCgtagcttgaaagggacgagt	13	11	0	1	rs9679004	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27887160	T	T	27887160	3	4	45	1	0	0	0	0	1	0	0	0	14767	652	23	4	543	4	SLC4A1AP	2	27887160	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6658855	27887160	215312213	76	49896											
ALK	238	broad.mit.edu	37	chr2	29543605	29543605	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaccagagagaaggcaggaGagcagtagtaccttggtggt	16	7	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29543605	C	C	29543605	1	2	45	0	1	0	0	0	0	0	0	0	525	957	33	4		4	ALK	2	29543605	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1656445	29543605	213655768	77	49897											
EHD3	30845	broad.mit.edu	37	chr2	31484432	31484432	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtccacgcctacatcatCagctctctgaagaaggagat	9	12	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31484432	T	T	31484432	2	4	45	1	0	0	0	0	0	0	0	1	5019	816	29	4		4	EHD3	2	31484432	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1940827	31484432	211714941	78	49898											
CDKL4	344387	broad.mit.edu	37	chr2	39406387	39406387	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttttaatttgggcctcttGaaaagaatcaaagtaggagc	9	6	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39406387	C	C	39406387	3	2	45	1	0	0	0	0	1	0	0	0	3186	1299	45	4	83	4	CDKL4	2	39406387	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7921955	39406387	203792986	79	49899											
TTC7A	57217	broad.mit.edu	37	chr2	47273468	47273468	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacagcctgatgttcaccaAggtgaagctggagcaggtgc	13	11	1	2	rs139010200	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47273468	G	G	47273468	3	3	45	1	0	0	0	0	1	0	0	0	16838	72	3	5	1879	5	TTC7A	2	47273468	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	7867081	47273468	195925905	80	49900											
TSPYL6	388951	broad.mit.edu	37	chr2	54483229	54483229	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggacctctggccctggtgCgggtcttccagagcatagtc	14	13	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54483229	T	T	54483229	2	4	45	1	0	0	0	0	0	0	0	1	16788	755	27	4		4	TSPYL6	2	54483229	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7209761	54483229	188716144	81	49901											
PNPT1	87178	broad.mit.edu	37	chr2	55873404	55873404	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actagctcacctgaagcttgTtgaatagcctccatcacaat	6	12	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55873404	C	C	55873404	2	2	45	1	0	0	0	0	0	0	0	1	12268	1722	60	5		5	PNPT1	2	55873404	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	1390175	55873404	187325969	82	49902											
EHBP1	23301	broad.mit.edu	37	chr2	63175761	63175761	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagagtcagaaagtgagcatCaaactcctgatgatcacctt	9	9	3	5			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63175761	A	A	63175761	3	1	45	1	0	0	0	0	1	0	0	0	5015	827	29	3	1935	3	EHBP1	2	63175761	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7302357	63175761	180023612	83	49903											
CEP68	23177	broad.mit.edu	37	chr2	65296693	65296693	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatcccagggcccatgagtGgggagcagcccccacgcctg	13	16	0	1	rs138848385	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65296693	C	C	65296693	3	2	45	1	0	0	0	0	1	0	0	0	3288	1348	47	4	117	4	CEP68	2	65296693	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2120932	65296693	177902680	84	49904											
ETAA1	54465	broad.mit.edu	37	chr2	67629997	67629997	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccctatctgccaaaggatGaaaaaccaacaacaaattct	4	11	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67629997	T	T	67629997	4	4	45	1	0	0	0	0	0	1	0	0	5309	1291	45	3	447	3	ETAA1	2	67629997	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2333304	67629997	175569376	85	49905											
PROKR1	10887	broad.mit.edu	37	chr2	68873421	68873421	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccaccaatgccctgctGgccatcgccattgacaggtg	10	15	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68873421	T	T	68873421	2	4	45	1	0	0	0	0	0	0	0	1	12658	1335	47	2		2	PROKR1	2	68873421	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1243424	68873421	174325952	86	49906											
GKN1	56287	broad.mit.edu	37	chr2	69204787	69204787	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaatatcaacgtcaatgatGacaacaacaatgctggaagt	8	7	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69204787	T	T	69204787	3	4	45	1	0	0	0	0	1	0	0	0	6488	1290	45	3	137	3	GKN1	2	69204787	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	331366	69204787	173994586	87	49907											
ALMS1	7840	broad.mit.edu	37	chr2	73677116	73677116	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagaaaagcccagcattttCcaccagcaggccttgccagg	10	13	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73677116	T	T	73677116	2	4	45	1	0	0	0	0	0	0	0	1	535	854	30	4		4	ALMS1	2	73677116	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4472329	73677116	169522257	88	49908											
TGOLN2	10618	broad.mit.edu	37	chr2	85554057	85554057	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttatcagaagggttggaGatgggcttggaatggtcttt	15	3	2	2	rs137902012	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85554057	T	T	85554057	2	4	45	1	0	0	0	0	0	0	0	1	15959	932	33	3		3	TGOLN2	2	85554057	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	11876941	85554057	157645316	89	49909											
KDM3A	55818	broad.mit.edu	37	chr2	86697482	86697482	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagtctccgcaaggataagGagcaacagaaggactcacct	10	11	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86697482	A	A	86697482	3	1	45	1	0	0	0	0	1	0	0	0	8196	1175	41	4	1713	4	KDM3A	2	86697482	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1143425	86697482	156501891	90	49910											
TRIM43	129868	broad.mit.edu	37	chr2	96261982	96261982	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttacgggcacagatgatcagGaatgagtataggaagctgca	13	6	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96261982	C	C	96261982	3	2	45	1	0	0	0	0	1	0	0	0	16642	1165	41	4	550	4	TRIM43	2	96261982	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9564500	96261982	146937391	91	49911											
SULT1C2	6819	broad.mit.edu	37	chr2	108922030	108922030	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctatcttggaccagtcaAtttcctccttcatgagaaaa	5	10	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108922030	G	G	108922030	3	3	45	1	0	0	0	0	1	0	0	0	15495	101	4	5	878	5	SULT1C2	2	108922030	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	12660048	108922030	134277343	92	49912											
CCDC93	54520	broad.mit.edu	37	chr2	118698860	118698860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgcaaaattgctatttctCgatttcttcgagcctaaatg	8	8	2	0	rs144153360	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118698860	T	T	118698860	3	4	45	1	0	0	0	0	1	0	0	0	2900	884	31	4	492	4	CCDC93	2	118698860	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	9776830	118698860	124500513	93	49913											
MYO7B	4648	broad.mit.edu	37	chr2	128366421	128366421	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctccctgccatgattgggGgccaggagggccaggcctcg	15	14	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128366421	A	A	128366421	3	1	45	1	0	0	0	0	1	0	0	0	10177	1232	43	4	2864	4	MYO7B	2	128366421	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9667561	128366421	114832952	94	49914											
WDR33	55339	broad.mit.edu	37	chr2	128482627	128482627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgagaagcatatcacagCcactgacctgtggcttcttt	8	11	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128482627	A	A	128482627	1	1	45	0	1	0	0	0	0	0	0	0	17414	754	26	3		3	WDR33	2	128482627	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	116206	128482627	114716746	95	49915											
HNMT	3176	broad.mit.edu	37	chr2	138762712	138762712	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctttctagatgctgtattAtgtaaaagacatcccagcta	6	9	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138762712	G	G	138762712	3	3	45	1	0	0	0	0	1	0	0	0	7322	449	16	5	676	5	HNMT	2	138762712	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	10280085	138762712	104436661	96	49916											
UPP2	151531	broad.mit.edu	37	chr2	158991312	158991312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgactgtgatcagatcaaCttgcctcatgatgtcctggt	9	11	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158991312	A	A	158991312	3	1	45	1	0	0	0	0	1	0	0	0	17139	564	20	3	1069	3	UPP2	2	158991312	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	20228600	158991312	84208061	97	49917											
UPP2	151531	broad.mit.edu	37	chr2	158991346	158991346	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtggagtaccagcaaCggcctcagctcctaatctcc	9	15	2	0	rs144945330	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158991346	T	T	158991346	3	4	45	1	0	0	0	0	1	0	0	0	17139	527	19	4	1103	4	UPP2	2	158991346	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	34	158991346	84208027	98	49918											
SLC4A10	57282	broad.mit.edu	37	chr2	162751233	162751233	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaaagatcgtaatgacttGgtatcaggaattgatgagtt	11	4	1	4	rs61748241		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162751233	A	A	162751233	2	1	45	1	0	0	0	0	0	0	0	1	14765	1339	47	4		4	SLC4A10	2	162751233	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3759887	162751233	80448140	99	49919											
ABCB11	8647	broad.mit.edu	37	chr2	169787351	169787351	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatttacaatcaacaaaatCaatcttcccctggaagttgt	4	9	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169787351	G	G	169787351	3	3	45	1	0	0	0	0	1	0	0	0	42	826	29	4	746	4	ABCB11	2	169787351	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7036118	169787351	73412022	100	49920											
UBR3	130507	broad.mit.edu	37	chr2	170938271	170938271	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacatttgtaaggaaagatAcaaagttcttgagcaacagt	8	6	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170938271	T	T	170938271	3	4	45	1	0	0	0	0	1	0	0	0	17029	391	14	5	5739	5	UBR3	2	170938271	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1150920	170938271	72261102	101	49921											
MYO3B	140469	broad.mit.edu	37	chr2	171248951	171248951	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttccaaggagtcttacagAagacaattcgaagcaattca	7	9	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171248951	G	G	171248951	2	3	45	1	0	0	0	0	0	0	0	1	10171	243	9	5		5	MYO3B	2	171248951	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	310680	171248951	71950422	102	49922											
TTN	7273	broad.mit.edu	37	chr2	179421791	179421791	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcctgtaatcttgctacCtccatcgaaagctggttgtt	9	10	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179421791	T	T	179421791	3	4	45	1	0	0	0	0	1	0	0	0	16861	681	24	4	20021	4	TTN	2	179421791	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	8172840	179421791	63777582	103	49923											
TTN	7273	broad.mit.edu	37	chr2	179599524	179599524	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actgtcttcaacttttacatCcgtaatatcaagtatagcct	4	10	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179599524	T	T	179599524	3	4	45	1	0	0	0	0	1	0	0	0	16861	855	30	4	89650	4	TTN	2	179599524	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	177733	179599524	63599849	104	49924											
ANKAR	150709	broad.mit.edu	37	chr2	190584478	190584478	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagcctgaagtacactctcGctgtgctgtcattctatatg	9	10	3	2	rs146913509	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190584478	C	C	190584478	3	2	45	1	0	0	0	0	1	0	0	0	623	1087	38	4	2443	4	ANKAR	2	190584478	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	10984954	190584478	52614895	105	49925											
CPS1	1373	broad.mit.edu	37	chr2	211441119	211441119	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggacagattctcacaAtggccaaccctattattggg	8	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211441119	G	G	211441119	3	3	45	1	0	0	0	0	1	0	0	0	3855	101	4	5	318	5	CPS1	2	211441119	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	20856641	211441119	31758254	106	49926											
FN1	2335	broad.mit.edu	37	chr2	216232721	216232721	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaggggtcaaagcacgagtCatccgtaggttggttcaagc	14	8	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216232721	T	T	216232721	3	4	45	1	0	0	0	0	1	0	0	0	6020	826	29	4	570	4	FN1	2	216232721	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4791602	216232721	26966652	107	49927											
VIL1	7429	broad.mit.edu	37	chr2	219294119	219294119	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaagctgatggaggtgatgAaccacgtgctgggcaagcgc	16	9	0	3	rs142981830	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219294119	C	C	219294119	3	2	45	1	0	0	0	0	1	0	0	0	17291	246	9	5	701	5	VIL1	2	219294119	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3061398	219294119	23905254	108	49928											
SLC23A3	151295	broad.mit.edu	37	chr2	220026772	220026772	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcagtgggcagaggcagtgGagaggctgggggatgcaggg	24	5	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220026772	C	C	220026772	2	2	45	1	0	0	0	0	0	0	0	1	14578	1161	41	4		4	SLC23A3	2	220026772	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	732653	220026772	23172601	109	49929											
C2orf24	27013	broad.mit.edu	37	chr2	220040963	220040963	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgccaccgggctggagaGctcctccaggctacagtcgg	13	15	0	1	rs145875060	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220040963	A	A	220040963	3	1	45	1	0	0	0	0	1	0	0	0	2181	971	34	4	1100	4	C2orf24	2	220040963	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	14191	220040963	23158410	110	49930											
OBSL1	23363	broad.mit.edu	37	chr2	220427250	220427250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttctgcaggagcagcgCggggctctccaccacctcct	10	17	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220427250	A	A	220427250	3	1	45	1	0	0	0	0	1	0	0	0	10908	768	27	3	3071	3	OBSL1	2	220427250	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	386287	220427250	22772123	111	49931											
TRIP12	9320	broad.mit.edu	37	chr2	230724018	230724018	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttgatggtgattgtgcaGatttcagttgttgctcctgg	13	5	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230724018	A	A	230724018	3	1	45	1	0	0	0	0	1	0	0	0	16681	942	33	4	5763	4	TRIP12	2	230724018	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	10296768	230724018	12475355	112	49932											
SP110	3431	broad.mit.edu	37	chr2	231067349	231067349	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgccttttgggcccttgtctCtaccgtggagttacaagttg	11	11	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231067349	G	G	231067349	3	3	45	1	0	0	0	0	1	0	0	0	15075	922	32	4	1255	4	SP110	2	231067349	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	343331	231067349	12132024	113	49933											
AGAP1	116987	broad.mit.edu	37	chr2	236649636	236649636	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaagaaagagattgtcgttGatggacagagctatctgctg	12	6	2	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236649636	A	A	236649636	3	1	45	1	0	0	0	0	1	0	0	0	366	1290	45	4	354	4	AGAP1	2	236649636	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5582287	236649636	6549737	114	49934											
LRRFIP1	9208	broad.mit.edu	37	chr2	238664729	238664729	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgctttagtgctgtttttctCctttacaggaatttgaaagg	9	6	1	1	rs56219042	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238664729	G	G	238664729	1	3	45	0	1	0	0	0	0	0	0	0	9114	870	30	4		4	LRRFIP1	2	238664729	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2015093	238664729	4534644	115	49935											
NUP210	23225	broad.mit.edu	37	chr3	13418947	13418947	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccagccaggacctgaacaGgcactcacgtcagatacata	8	15	2	2	rs62232830		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13418947	C	C	13418947	1	2	45	0	1	0	0	0	0	0	0	0	10855	1015	35	4		4	NUP210	3	13418947	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08		13418947	184603483	116	49936											
CAPN7	23473	broad.mit.edu	37	chr3	15265058	15265058	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaacgttttgcctatccaAtgcctttctggtaagtaagc	9	9	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15265058	T	T	15265058	3	4	45	1	0	0	0	0	1	0	0	0	2657	101	4	5	737	5	CAPN7	3	15265058	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1846111	15265058	182757372	117	49937											
AZI2	64343	broad.mit.edu	37	chr3	28382010	28382010	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaatgggaagcaacagaTtcatctcctgaatatattga	8	7	2	3	rs142780118	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28382010	C	C	28382010	2	2	45	1	0	0	0	0	0	0	0	1	1246	1490	52	5		5	AZI2	3	28382010	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	13116952	28382010	169640420	118	49938											
ITGA9	3680	broad.mit.edu	37	chr3	37523101	37523101	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatcccttgctatgaaggtGagcatggattgatttttcct	10	7	0	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37523101	A	A	37523101	1	1	45	0	1	0	0	0	0	0	0	0	7953	1305	45	4		4	ITGA9	3	37523101	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9141091	37523101	160499329	119	49939											
DLEC1	9940	broad.mit.edu	37	chr3	38158308	38158308	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatagggtggcacagaagctCatctcagtcatcctgcaggc	11	11	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38158308	T	T	38158308	2	4	45	1	0	0	0	0	0	0	0	1	4592	813	29	4		4	DLEC1	3	38158308	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	635207	38158308	159864122	120	49940											
CYP8B1	1582	broad.mit.edu	37	chr3	42916001	42916001	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagggcagatggaaacGcccgaaccccagggcatggt	13	14	0	1	rs138292874	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42916001	T	T	42916001	2	4	45	1	0	0	0	0	0	0	0	1	4231	1074	38	3		3	CYP8B1	3	42916001	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4757693	42916001	155106429	121	49941											
C3orf75	54859	broad.mit.edu	37	chr3	47539870	47539870	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccattcagcaggatgtcaTtctcctcatcctccgcatct	7	15	5	0	rs149565751	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47539870	C	C	47539870	3	2	45	1	0	0	0	0	1	0	0	0	2267	1493	52	5	230	5	C3orf75	3	47539870	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	4623869	47539870	150482560	122	49942											
P4HTM	54681	broad.mit.edu	37	chr3	49039984	49039984	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggatgactccagagagcAttcaggagatgtacgccgcg	15	9	1	3	rs140290144	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49039984	G	G	49039984	3	3	45	1	0	0	0	0	1	0	0	0	11454	217	8	5	693	5	P4HTM	3	49039984	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1500114	49039984	148982446	123	49943											
USP19	10869	broad.mit.edu	37	chr3	49151713	49151713	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaacgggtcaaaagtgatgGagacctgtggatgtagaggt	16	4	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49151713	C	C	49151713	3	2	45	1	0	0	0	0	1	0	0	0	17176	1174	41	4	2016	4	USP19	3	49151713	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	111729	49151713	148870717	124	49944											
TRAIP	10293	broad.mit.edu	37	chr3	49881339	49881339	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagagtgtcgatgatgacCtggctgtctcgtttctcctt	11	11	2	3	rs145932323	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49881339	T	T	49881339	2	4	45	1	0	0	0	0	0	0	0	1	16572	680	24	4		4	TRAIP	3	49881339	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	729626	49881339	148141091	125	49945											
RBM6	10180	broad.mit.edu	37	chr3	50009498	50009498	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attctcaatttaaggatcaaGattataggaccggcccaagt	8	8	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50009498	A	A	50009498	3	1	45	1	0	0	0	0	1	0	0	0	13252	942	33	4	1340	4	RBM6	3	50009498	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	128159	50009498	148012932	126	49946											
PBRM1	55193	broad.mit.edu	37	chr3	52682408	52682408	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taagttttggcattttttgcGaggagatctatatctttggc	10	5	2	1	rs148664439	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52682408	A	A	52682408	2	1	45	1	0	0	0	0	0	0	0	1	11585	1045	37	4		4	PBRM1	3	52682408	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2672910	52682408	145340022	127	49947											
ITIH1	3697	broad.mit.edu	37	chr3	52812964	52812964	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccctccctgcagtacagcAgatggaaacgcatttatcgg	9	12	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52812964	G	G	52812964	2	3	45	1	0	0	0	0	0	0	0	1	7973	175	7	5		5	ITIH1	3	52812964	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	130556	52812964	145209466	128	49948											
DCP1A	55802	broad.mit.edu	37	chr3	53326488	53326488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttcgaggtaagctgggggGaacctgtgcagtaggagctt	17	6	0	0	rs34229192	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53326488	T	T	53326488	3	4	45	1	0	0	0	0	1	0	0	0	4331	1174	41	3	770	3	DCP1A	3	53326488	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	513524	53326488	144695942	129	49949											
DCP1A	55802	broad.mit.edu	37	chr3	53326592	53326592	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattggactgtgtgatggagGctggagtgattagcaccggg	17	6	0	2	rs35988197	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53326592	C	C	53326592	3	2	45	1	0	0	0	0	1	0	0	0	4331	1203	42	4	874	4	DCP1A	3	53326592	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	104	53326592	144695838	130	49950											
MINA	84864	broad.mit.edu	37	chr3	97686208	97686208	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagcttgaacagggacccaTagtatgtggccagtgcaggg	14	8	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97686208	C	C	97686208	3	2	45	1	0	0	0	0	1	0	0	0	9679	1406	49	5	1203	5	MINA	3	97686208	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	44359616	97686208	100336222	131	49951											
ABI3BP	25890	broad.mit.edu	37	chr3	100605006	100605006	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccaacaacagtcttgtgaTtgaaaatcttactccaaatt	4	9	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100605006	C	C	100605006	3	2	45	1	0	0	0	0	1	0	0	0	91	1493	52	5	2707	5	ABI3BP	3	100605006	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	2918798	100605006	97417424	132	49952											
MYH15	22989	broad.mit.edu	37	chr3	108158716	108158716	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgctctgttaagtttgctGatatcctcatttagaaactc	7	9	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108158716	A	A	108158716	2	1	45	1	0	0	0	0	0	0	0	1	10128	1280	45	4		4	MYH15	3	108158716	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7553710	108158716	89863714	133	49953											
PLCXD2	257068	broad.mit.edu	37	chr3	111427038	111427038	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaaggtctgggatgggctGatggaaattgactcgtttct	13	6	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111427038	T	T	111427038	2	4	45	1	0	0	0	0	0	0	0	1	12137	1277	45	3		3	PLCXD2	3	111427038	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3268322	111427038	86595392	134	49954											
CD80	941	broad.mit.edu	37	chr3	119276545	119276545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtatggacacttggatgGtgatgttccctgcctccgtg	14	9	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119276545	T	T	119276545	3	4	45	1	0	0	0	0	1	0	0	0	3068	1261	44	3	855	3	CD80	3	119276545	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7849507	119276545	78745885	135	49955											
GTF2E1	2960	broad.mit.edu	37	chr3	120469649	120469649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtagagactgctgcagacGggaaaaccactcgccataac	12	11	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120469649	T	T	120469649	3	4	45	1	0	0	0	0	1	0	0	0	6921	1116	39	1	252	1	GTF2E1	3	120469649	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1193104	120469649	77552781	136	49956											
IQCB1	9657	broad.mit.edu	37	chr3	121507287	121507287	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctccacctgacctaaaaaGatgatagacactattacaac	4	11	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121507287	A	A	121507287	1	1	45	0	1	0	0	0	0	0	0	0	7873	957	33	4		4	IQCB1	3	121507287	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1037638	121507287	76515143	137	49957											
PARP9	83666	broad.mit.edu	37	chr3	122255087	122255087	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaactggtatgggacttgctGaaacagcctatggctcacag	12	9	1	1	rs77625852		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122255087	A	A	122255087	4	1	45	1	0	0	0	0	0	1	0	0	11560	1299	45	4	512	4	PARP9	3	122255087	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	747800	122255087	75767343	138	49958											
MRPL3	11222	broad.mit.edu	37	chr3	131190061	131190061	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggttttcgtttgaccaTgcgtagcaggctggccttta	13	8	0	1	rs150805631		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131190061	C	C	131190061	3	2	45	1	0	0	0	0	1	0	0	0	9887	1464	51	5	370	5	MRPL3	3	131190061	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	8934974	131190061	66832369	139	49959											
NCK1	4690	broad.mit.edu	37	chr3	136664801	136664801	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacaggctctttacccattCagctcatctaatgatgaaga	7	10	4	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136664801	G	G	136664801	3	3	45	1	0	0	0	0	1	0	0	0	10314	825	29	4	609	4	NCK1	3	136664801	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5474740	136664801	61357629	140	49960											
DZIP1L	199221	broad.mit.edu	37	chr3	137802955	137802955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggaagggcagacctacCatctcctcctgggaggcaat	12	11	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137802955	A	A	137802955	3	1	45	1	0	0	0	0	1	0	0	0	4904	608	21	2	1145	2	DZIP1L	3	137802955	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1138154	137802955	60219475	141	49961											
ACPL2	92370	broad.mit.edu	37	chr3	141011429	141011429	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagctggagaagacctaCggggagatggccaagatcgt	15	9	0	4	rs116687012	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141011429	T	T	141011429	2	4	45	1	0	0	0	0	0	0	0	1	166	547	19	4		4	ACPL2	3	141011429	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3208474	141011429	57011001	142	49962											
SLC9A9	285195	broad.mit.edu	37	chr3	143043068	143043069	+	Intron	INS	-	G	G													tgaattagtgggagcaaggtINSggggtcattgcaatgttccc					rs141754500	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143043069	G	G	143043068	6	5	45	0	1	1	1	0	0	0	0	0	14835	1711	59	0		0	SLC9A9	3	143043068	Intron	INS	-	TCGA-17-Z012-01A-01W-0746-08	2031639	143043068	54979362	143	49963											
SLC9A9	285195	broad.mit.edu	37	chr3	143397949	143397950	+	Intron	INS	-	A	A													gggcggctacacacagcagtINSaaaaaaaagcaaattaggaa					rs140034677	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143397950	A	A	143397949	6	5	45	0	1	1	1	0	0	0	0	0	14835	1653	57	0		0	SLC9A9	3	143397949	Intron	INS	-	TCGA-17-Z012-01A-01W-0746-08	354881	143397949	54624481	144	49964											
FAM194A	131831	broad.mit.edu	37	chr3	150398256	150398256	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcactaatgaactcaccAtcttcagagaaatgagtctg	7	10	5	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150398256	T	T	150398256	3	4	45	1	0	0	0	0	1	0	0	0	5573	231	8	5	905	5	FAM194A	3	150398256	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	7000307	150398256	47624174	145	49965											
SHOX2	6474	broad.mit.edu	37	chr3	157815867	157815867	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctttcagtctgagatcggcGatgctggagttcttgctggt	14	8	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157815867	A	A	157815867	2	1	45	1	0	0	0	0	0	0	0	1	14402	1048	37	4		4	SHOX2	3	157815867	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7417611	157815867	40206563	146	49966											
SI	6476	broad.mit.edu	37	chr3	164710118	164710118	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaggttccagtactggggTaaccataaatgctggacccc	10	11	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164710118	G	G	164710118	3	3	45	1	0	0	0	0	1	0	0	0	14410	1638	57	5	602	5	SI	3	164710118	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	6894251	164710118	33312312	147	49967											
BCHE	590	broad.mit.edu	37	chr3	165547912	165547912	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataggggacaacaaatgcttCattcagaagaatttcttggg	10	6	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165547912	T	T	165547912	3	4	45	1	0	0	0	0	1	0	0	0	1363	835	29	4	910	4	BCHE	3	165547912	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	837794	165547912	32474518	148	49968											
GHSR	2693	broad.mit.edu	37	chr3	172165646	172165646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggtcggtgccgttctcGtgctccaccccgactagcac	11	16	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172165646	T	T	172165646	3	4	45	1	0	0	0	0	1	0	0	0	6439	1136	40	3	624	3	GHSR	3	172165646	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	6617734	172165646	25856784	149	49969											
PEX5L	51555	broad.mit.edu	37	chr3	179592167	179592167	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgactcagagttgagggcgCtttttccaccactcagttct	9	13	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179592167	T	T	179592167	3	4	45	1	0	0	0	0	1	0	0	0	11844	797	28	4	1242	4	PEX5L	3	179592167	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7426521	179592167	18430263	150	49970											
YEATS2	55689	broad.mit.edu	37	chr3	183454623	183454623	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacataatctgaaggtattGtaacaaaacattgctcccta	5	8	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183454623	A	A	183454623	1	1	45	0	1	0	0	0	0	0	0	0	17599	1392	48	4		4	YEATS2	3	183454623	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3862456	183454623	14567807	151	49971											
C3orf59	151963	broad.mit.edu	37	chr3	192635598	192635598	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttacagcccagggaggctGccttgttggcggtgggagcc	17	10	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192635598	A	A	192635598	3	1	45	1	0	0	0	0	1	0	0	0	2259	1319	46	4	1451	4	C3orf59	3	192635598	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9180975	192635598	5386832	152	49972											
DRD5	1816	broad.mit.edu	37	chr4	9784055	9784055	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcctgaacctgtgcgtcatCagcgtggaccgctactgggc	12	13	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9784055	T	T	9784055	2	4	45	1	0	0	0	0	0	0	0	1	4800	816	29	4		4	DRD5	4	9784055	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08		9784055	181370221	153	49973											
ZNF518B	85460	broad.mit.edu	37	chr4	10447910	10447910	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaaggaattatgtccgcCgttcaagtgtgtagtgtata	12	6	2	0	rs138947344		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10447910	T	T	10447910	3	4	45	1	0	0	0	0	1	0	0	0	18090	652	23	4	3185	4	ZNF518B	4	10447910	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	663855	10447910	180706366	154	49974											
GABRA2	2555	broad.mit.edu	37	chr4	46390697	46390697	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaagcaggaactgcatGttgtagatgttcaattttgt	9	5	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46390697	A	A	46390697	2	1	45	1	0	0	0	0	0	0	0	1	6221	1368	48	4		4	GABRA2	4	46390697	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	35942787	46390697	144763579	155	49975											
CWH43	80157	broad.mit.edu	37	chr4	49052794	49052794	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggatccctgatgaccccaCtaattatagagacaaccaga	7	11	0	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49052794	T	T	49052794	3	4	45	1	0	0	0	0	1	0	0	0	4106	565	20	4	2007	4	CWH43	4	49052794	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2662097	49052794	142101482	156	49976											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68691516	68691516	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagacaagatggctccattAtaactatgtggtgcattaca	8	9	0	2	rs145154073		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68691516	T	T	68691516	4	4	45	1	0	0	0	0	0	1	0	0	16364	456	16	5	235	5	TMPRSS11D	4	68691516	Nonsense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	19638722	68691516	122462760	157	49977											
PPEF2	5470	broad.mit.edu	37	chr4	76809396	76809396	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatctcctcactgtaacagGttgagacccggttgatgttt	10	9	2	3	rs61756411	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76809396	A	A	76809396	3	1	45	1	0	0	0	0	1	0	0	0	12404	1261	44	4	1806	4	PPEF2	4	76809396	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	8117880	76809396	114344880	158	49978											
CCNI	10983	broad.mit.edu	37	chr4	77976472	77976472	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggactgccaaatgttgagatGggctcaatttgggcaaactg	13	7	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77976472	C	C	77976472	3	2	45	1	0	0	0	0	1	0	0	0	2956	1348	47	4	620	4	CCNI	4	77976472	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1167076	77976472	113177804	159	49979											
RASGEF1B	153020	broad.mit.edu	37	chr4	82367000	82367000	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgtagcaactctttagaGaaaacaaagtaaacagatga	7	7	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82367000	A	A	82367000	1	1	45	0	1	0	0	0	0	0	0	0	13178	957	33	4		4	RASGEF1B	4	82367000	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4390528	82367000	108787276	160	49980											
SCD5	79966	broad.mit.edu	37	chr4	83601861	83601861	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgcccattcacttactTtctctggatccggaccacag	7	14	3	0	rs145164872	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83601861	C	C	83601861	3	2	45	1	0	0	0	0	1	0	0	0	13999	1855	64	5	642	5	SCD5	4	83601861	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	1234861	83601861	107552415	161	49981											
FAM13A	10144	broad.mit.edu	37	chr4	89708899	89708899	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaagaatcaatgccaaCtcacttgtctctcccatgtc	7	12	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89708899	T	T	89708899	1	4	45	0	1	0	0	0	0	0	0	0	5498	580	20	4		4	FAM13A	4	89708899	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6107038	89708899	101445377	162	49982											
ADH4	127	broad.mit.edu	37	chr4	100052703	100052703	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggcaaaatccacacctccCttggtcaattcaatgataac	6	12	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100052703	G	G	100052703	3	3	45	1	0	0	0	0	1	0	0	0	310	680	24	4	363	4	ADH4	4	100052703	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	10343804	100052703	91101573	163	49983											
FAT4	79633	broad.mit.edu	37	chr4	126370186	126370186	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccccaatttttaaggaagAcccatttatatctgaaatat	5	8	1	2	rs138655269	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126370186	T	T	126370186	3	4	45	1	0	0	0	0	1	0	0	0	5749	275	10	5	8049	5	FAT4	4	126370186	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	26317483	126370186	64784090	164	49984											
PHF17	79960	broad.mit.edu	37	chr4	129793163	129793163	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattccaaagaagggggaaCggcagcagcagggagaggcc	18	8	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129793163	T	T	129793163	3	4	45	1	0	0	0	0	1	0	0	0	11923	527	19	4	2340	4	PHF17	4	129793163	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3422977	129793163	61361113	165	49985											
MAML3	55534	broad.mit.edu	37	chr4	140810914	140810914	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgtcttctgcaggttgTttgccattggaggcactata	11	7	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140810914	A	A	140810914	3	1	45	1	0	0	0	0	1	0	0	0	9299	1725	60	5	1756	5	MAML3	4	140810914	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	11017751	140810914	50343362	166	49986											
TBC1D9	23158	broad.mit.edu	37	chr4	141583238	141583238	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcatagtacccaggatGtgtggccttctcattgatgg	11	9	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141583238	A	A	141583238	3	1	45	1	0	0	0	0	1	0	0	0	15749	1377	48	4	2236	4	TBC1D9	4	141583238	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	772324	141583238	49571038	167	49987											
TIGD4	201798	broad.mit.edu	37	chr4	153691222	153691222	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatagctatacatttggaaGataaacatgatggaaagaat	8	4	1	3	rs149761550	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153691222	A	A	153691222	3	1	45	1	0	0	0	0	1	0	0	0	16021	942	33	4	607	4	TIGD4	4	153691222	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	12107984	153691222	37463054	168	49988											
RNF175	285533	broad.mit.edu	37	chr4	154641373	154641373	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtctgagcagatctcgGcaaagtctctccccattact	8	12	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154641373	C	C	154641373	3	2	45	1	0	0	0	0	1	0	0	0	13574	1203	42	4	409	4	RNF175	4	154641373	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	950151	154641373	36512903	169	49989											
CPE	1363	broad.mit.edu	37	chr4	166416828	166416828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttacagccctgctgctgGggtaagtaatcataataata	8	9	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166416828	T	T	166416828	3	4	45	1	0	0	0	0	1	0	0	0	3831	1246	43	2	1361	2	CPE	4	166416828	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	11775455	166416828	24737448	170	49990											
DDX60	55601	broad.mit.edu	37	chr4	169212925	169212925	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taataaaggcttcatgtcctCagcccaatgggaagtgatga	10	8	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169212925	T	T	169212925	3	4	45	1	0	0	0	0	1	0	0	0	4411	835	29	4	4247	4	DDX60	4	169212925	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2796097	169212925	21941351	171	49991											
CCDC111	201973	broad.mit.edu	37	chr4	185615780	185615780	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacaggtgcatctgctgaTgctgtctgggataatggcat	12	8	3	1	rs150917934	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185615780	G	G	185615780	3	3	45	1	0	0	0	0	1	0	0	0	2774	1461	51	5	1576	5	CCDC111	4	185615780	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	16402855	185615780	5538496	172	49992											
MTNR1A	4543	broad.mit.edu	37	chr4	187455099	187455099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcctaggcaccatgctgGcggggtcagaggccacggcc	16	13	1	1	rs28383652	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187455099	T	T	187455099	3	4	45	1	0	0	0	0	1	0	0	0	10045	1203	42	3	259	3	MTNR1A	4	187455099	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1839319	187455099	3699177	173	49993											
ADCY2	108	broad.mit.edu	37	chr5	7709395	7709395	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagccaaaatgagggcctcGgtccgcatgacccggtactt	13	12	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7709395	C	C	7709395	2	2	45	1	0	0	0	0	0	0	0	1	294	1103	39	4		4	ADCY2	5	7709395	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08		7709395	173205865	174	49994											
MARCH6	10299	broad.mit.edu	37	chr5	10417436	10417436	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggagttgtccctctccttCtggggctcctgtttgagctg	12	12	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10417436	T	T	10417436	2	4	45	1	0	0	0	0	0	0	0	1	9397	912	32	4		4	MARCH6	5	10417436	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2708041	10417436	170497824	175	49995											
DNAH5	1767	broad.mit.edu	37	chr5	13867953	13867953	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcactaataagctctttcTtgaaactgggctgcagtgag	10	9	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13867953	A	A	13867953	3	1	45	1	0	0	0	0	1	0	0	0	4644	1609	56	5	10111	5	DNAH5	5	13867953	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	3450517	13867953	167047307	176	49996											
CDH18	1016	broad.mit.edu	37	chr5	19503202	19503202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcatctttatcagtggcaCtgatggtatgaataacctaa	7	7	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19503202	A	A	19503202	3	1	45	1	0	0	0	0	1	0	0	0	3133	565	20	3	855	3	CDH18	5	19503202	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5635249	19503202	161412058	177	49997											
CDH18	1016	broad.mit.edu	37	chr5	19591363	19591363	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgatagtgttctggaagacAtttcatattaaacatattta	6	5	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19591363	G	G	19591363	1	3	45	0	1	0	0	0	0	0	0	0	3133	232	8	5		5	CDH18	5	19591363	Intron	SNP	A	TCGA-17-Z012-01A-01W-0746-08	88161	19591363	161323897	178	49998											
CDH12	1010	broad.mit.edu	37	chr5	21975242	21975242	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtagcaacataaggtccatCcaaaaactttggctcattat	6	9	1	0	rs145189313	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21975242	G	G	21975242	3	3	45	1	0	0	0	0	1	0	0	0	3128	855	30	4	1940	4	CDH12	5	21975242	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2383879	21975242	158940018	179	49999											
CDH9	1007	broad.mit.edu	37	chr5	26915831	26915831	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtattttaatgataaattCcgattccggttccacctgcc	6	10	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26915831	T	T	26915831	3	4	45	1	0	0	0	0	1	0	0	0	3147	864	30	4	1979	4	CDH9	5	26915831	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4940589	26915831	153999429	180	50000											
RNASEN	29102	broad.mit.edu	37	chr5	31511132	31511132	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctcaggctagttagtgacTctgactcacctaaatcttca	7	11	5	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31511132	C	C	31511132	1	2	45	0	1	0	0	0	0	0	0	0	13528	1566	54	5		5	RNASEN	5	31511132	Intron	SNP	T	TCGA-17-Z012-01A-01W-0746-08	4595301	31511132	149404128	181	50001											
PDZD2	23037	broad.mit.edu	37	chr5	32088391	32088391	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgccccaatccaccctcgAgtcctgctcatcttcccacc	5	21	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32088391	G	G	32088391	3	3	45	1	0	0	0	0	1	0	0	0	11795	304	11	5	4911	5	PDZD2	5	32088391	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	577259	32088391	148826869	182	50002											
C1QTNF3	114899	broad.mit.edu	37	chr5	34028882	34028882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactggggccccaaatctaCcagtcatgacatcaaagaag	8	11	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34028882	A	A	34028882	3	1	45	1	0	0	0	0	1	0	0	0	1984	507	18	3	294	3	C1QTNF3	5	34028882	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1940491	34028882	146886378	183	50003											
C5orf33	133686	broad.mit.edu	37	chr5	36225683	36225683	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctataactggtttaagtCtgtccaagactttactcgct	6	12	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36225683	A	A	36225683	3	1	45	1	0	0	0	0	1	0	0	0	2315	913	32	3	843	3	C5orf33	5	36225683	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2196801	36225683	144689577	184	50004											
WDR70	55100	broad.mit.edu	37	chr5	37392168	37392168	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagacaaaatgaagatattgAgccaacatcctcaagatcaa	6	8	2	5			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37392168	T	T	37392168	3	4	45	1	0	0	0	0	1	0	0	0	17448	304	11	5	256	5	WDR70	5	37392168	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1166485	37392168	143523092	185	50005											
RICTOR	253260	broad.mit.edu	37	chr5	38959337	38959337	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttggaaaggatgactctaGccaatccatctctgctatag	8	9	2	1	rs61753520	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38959337	C	C	38959337	3	2	45	1	0	0	0	0	1	0	0	0	13467	971	34	4	3056	4	RICTOR	5	38959337	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1567169	38959337	141955923	186	50006											
FAM151B	167555	broad.mit.edu	37	chr5	79817814	79817814	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttaaatttttttcttttCttttaagggtacagttggac	7	4	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79817814	G	G	79817814	1	3	45	0	1	0	0	0	0	0	0	0	5505	928	32	4		4	FAM151B	5	79817814	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	40858477	79817814	101097446	187	50007											
RASA1	5921	broad.mit.edu	37	chr5	86672799	86672799	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctactgaggatttttcttcaCgaaaagcttgaatcgttgtt	8	7	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86672799	T	T	86672799	2	4	45	1	0	0	0	0	0	0	0	1	13168	535	19	4		4	RASA1	5	86672799	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6854985	86672799	94242461	188	50008											
GPR98	84059	broad.mit.edu	37	chr5	89949519	89949519	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcattatagcgaaggatgaCggtaatggaagcatctacta	10	6	2	1	rs35254354		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89949519	T	T	89949519	2	4	45	1	0	0	0	0	0	0	0	1	6787	535	19	4		4	GPR98	5	89949519	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3276720	89949519	90965741	189	50009											
CAST	831	broad.mit.edu	37	chr5	96079422	96079422	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggtgaacgcagaggagcaaGagaagcagttcgtatcttcc	13	9	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96079422	A	A	96079422	1	1	45	0	1	0	0	0	0	0	0	0	2710	942	33	4		4	CAST	5	96079422	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	6129903	96079422	84835838	190	50010											
CAST	831	broad.mit.edu	37	chr5	96101822	96101822	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacactatcccacctgaataCagacatctcctggatgataa	6	12	1	3	rs61733809	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96101822	T	T	96101822	2	4	45	1	0	0	0	0	0	0	0	1	2710	489	17	4		4	CAST	5	96101822	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	22400	96101822	84813438	191	50011											
SLC25A46	91137	broad.mit.edu	37	chr5	110091158	110091159	+	Intron	DNP	GT	TG	TG													ttatttaagtttatttttatGttttagggaggttttacata							TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	110091159	TG	TG	110091158	1	4	45	0	1	0	0	0	0	0	0	0	14625	1392	48	3		3	SLC25A46	5	110091158	Intron	DNP	GT	TCGA-17-Z012-01A-01W-0746-08	13989336	110091158	70824102	192	50012											
APC	324	broad.mit.edu	37	chr5	112175508	112175508	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgattgccagctccgttcAgagtgaaccatgcagtggaa	11	10	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112175508	G	G	112175508	3	3	45	1	0	0	0	0	1	0	0	0	765	188	7	5	4275	5	APC	5	112175508	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	2084350	112175508	68739752	193	50013											
CCDC112	153733	broad.mit.edu	37	chr5	114603623	114603623	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttggaatagccctaaggaGaaaaagagaaaagcaattgt	12	4	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114603623	C	C	114603623	1	2	45	0	1	0	0	0	0	0	0	0	2775	957	33	4		4	CCDC112	5	114603623	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2428115	114603623	66311637	194	50014											
ZNF608	57507	broad.mit.edu	37	chr5	123985341	123985341	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttggtgcagtccagtagGgttcccacgtacgttttgtt	12	9	0	0	rs144612616	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123985341	A	A	123985341	2	1	45	1	0	0	0	0	0	0	0	1	18161	1219	43	4		4	ZNF608	5	123985341	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9381718	123985341	56929919	195	50015											
FBN2	2201	broad.mit.edu	37	chr5	127668685	127668685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatattcagacatgaggcatGcatgtcgcagttatgagcac	11	8	1	3	rs78727187	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127668685	T	T	127668685	3	4	45	1	0	0	0	0	1	0	0	0	5760	1319	46	3	4733	3	FBN2	5	127668685	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3683344	127668685	53246575	196	50016											
FBN2	2201	broad.mit.edu	37	chr5	127697462	127697462	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacataccctggtgggcaCgtacagctgtaacttcctgg	10	12	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127697462	T	T	127697462	2	4	45	1	0	0	0	0	0	0	0	1	5760	523	19	4		4	FBN2	5	127697462	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	28777	127697462	53217798	197	50017											
RAPGEF6	51735	broad.mit.edu	37	chr5	130791482	130791482	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtaaaacatcaataaataAtgttttcataccttcatgta	4	6	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130791482	C	C	130791482	1	2	45	0	1	0	0	0	0	0	0	0	13156	116	4	5		5	RAPGEF6	5	130791482	Intron	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3094020	130791482	50123778	198	50018											
SHROOM1	134549	broad.mit.edu	37	chr5	132159971	132159971	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgggcctggaaatacctAcagaaccattcaccccctgc	8	14	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132159971	G	G	132159971	3	3	45	1	0	0	0	0	1	0	0	0	14406	391	14	5	1192	5	SHROOM1	5	132159971	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1368489	132159971	48755289	199	50019											
KIF20A	10112	broad.mit.edu	37	chr5	137519240	137519240	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagaaccagagctttgccaGcacccacctcaaccagaact	6	15	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137519240	C	C	137519240	3	2	45	1	0	0	0	0	1	0	0	0	8356	971	34	4	1139	4	KIF20A	5	137519240	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5359269	137519240	43396020	200	50020											
CDC23	8697	broad.mit.edu	37	chr5	137524733	137524733	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtattgttagcagagagTgaagcaggtaggaaaaaggg	18	2	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137524733	C	C	137524733	2	2	45	1	0	0	0	0	0	0	0	1	3091	1683	59	5		5	CDC23	5	137524733	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	5493	137524733	43390527	201	50021											
PCDHA7	56141	broad.mit.edu	37	chr5	140215307	140215307	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgtgtccgtggaggtggccGacgtgaacgacaacgccccg	16	13	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215307	A	A	140215307	3	1	45	1	0	0	0	0	1	0	0	0	11623	1058	37	4	1341	4	PCDHA7	5	140215307	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2690574	140215307	40699953	202	50022											
PCDHGB4	8641	broad.mit.edu	37	chr5	140768876	140768876	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttcacaagtcagggcttcTgatccggacttggggcccaa	11	11	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140768876	A	A	140768876	2	1	45	1	0	0	0	0	0	0	0	1	11659	1567	55	5		5	PCDHGB4	5	140768876	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	553569	140768876	40146384	203	50023											
PCDHGA8	9708	broad.mit.edu	37	chr5	140772822	140772822	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaattaacgaaatcgcggttCctggagcacgttatccactc	8	11	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140772822	G	G	140772822	3	3	45	1	0	0	0	0	1	0	0	0	11654	855	30	4	444	4	PCDHGA8	5	140772822	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3946	140772822	40142438	204	50024											
PCDH12	51294	broad.mit.edu	37	chr5	141325298	141325298	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatcacattgtcacggtagTtggtggtgaggggcaaagag	16	5	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141325298	C	C	141325298	3	2	45	1	0	0	0	0	1	0	0	0	11604	1725	60	5	355	5	PCDH12	5	141325298	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	552476	141325298	39589962	205	50025											
FBXO38	81545	broad.mit.edu	37	chr5	147774426	147774426	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagatgaaacaaaggactaTatgaatcaactttcacatga	7	7	2	4	rs77480566	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147774426	C	C	147774426	2	2	45	1	0	0	0	0	0	0	0	1	5803	1413	49	5		5	FBXO38	5	147774426	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	6449128	147774426	33140834	206	50026											
IL17B	27190	broad.mit.edu	37	chr5	148756389	148756389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccagctctgagctgttcCtcagctgggccaccatctcc	11	16	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148756389	A	A	148756389	3	1	45	1	0	0	0	0	1	0	0	0	7705	681	24	2	329	2	IL17B	5	148756389	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	981963	148756389	32158871	207	50027											
SYNPO	11346	broad.mit.edu	37	chr5	150028398	150028398	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcccccagcctcagatttCatgtccagctccctgctcat	7	17	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150028398	T	T	150028398	2	4	45	1	0	0	0	0	0	0	0	1	15575	825	29	4		4	SYNPO	5	150028398	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1272009	150028398	30886862	208	50028											
ZNF300	91975	broad.mit.edu	37	chr5	150276377	150276377	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacctgcctgaagagtttgtCttgattctctagaaatctct	8	9	3	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150276377	G	G	150276377	3	3	45	1	0	0	0	0	1	0	0	0	17957	913	32	4	1394	4	ZNF300	5	150276377	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	247979	150276377	30638883	209	50029											
KIF4B	285643	broad.mit.edu	37	chr5	154394493	154394493	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcatctaaagcaacaggtAcaacagctacaagtcttgtt	6	9	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154394493	G	G	154394493	2	3	45	1	0	0	0	0	0	0	0	1	8374	378	14	5		5	KIF4B	5	154394493	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	4118116	154394493	26520767	210	50030											
HAVCR1	26762	broad.mit.edu	37	chr5	156456833	156456833	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttgcaaagctttaatttGaaggctgctaaatgaaacac	7	6	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156456833	A	A	156456833	4	1	45	1	0	0	0	0	0	1	0	0	7039	1299	45	4	92	4	HAVCR1	5	156456833	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2062340	156456833	24458427	211	50031											
ADRA1B	147	broad.mit.edu	37	chr5	159343983	159343983	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagagttgaaaaatgccaActtcactggccccaaccaga	10	11	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159343983	C	C	159343983	3	2	45	1	0	0	0	0	1	0	0	0	335	43	2	5	73	5	ADRA1B	5	159343983	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	2887150	159343983	21571277	212	50032											
GABRG2	2566	broad.mit.edu	37	chr5	161580356	161580356	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaatctggtctattgggtCtcctacctctacctgtgagg	9	10	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161580356	G	G	161580356	2	3	45	1	0	0	0	0	0	0	0	1	6232	900	32	4		4	GABRG2	5	161580356	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2236373	161580356	19334904	213	50033											
ODZ2	57451	broad.mit.edu	37	chr5	167576513	167576514	+	Intron	INS	-	G	G													cttccctttccgaggcatgtINStaggaaaacagaaacacatc					rs143093732	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167576514	G	G	167576513	6	5	45	0	1	1	1	0	0	0	0	0	10930	1740	60	0		0	ODZ2	5	167576513	Intron	INS	-	TCGA-17-Z012-01A-01W-0746-08	5996157	167576513	13338747	214	50034											
ODZ2	57451	broad.mit.edu	37	chr5	167630824	167630824	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagacaaacaccacatcctCaatgttaaaagtggtacgtg	7	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167630824	T	T	167630824	2	4	45	1	0	0	0	0	0	0	0	1	10930	813	29	4		4	ODZ2	5	167630824	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	54311	167630824	13284436	215	50035											
CLK4	57396	broad.mit.edu	37	chr5	178050348	178050348	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttccgcttgtgacttccacGatagctttcatgtccccagc	7	15	1	1	rs144043842	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178050348	A	A	178050348	3	1	45	1	0	0	0	0	1	0	0	0	3571	1058	37	4	1423	4	CLK4	5	178050348	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	10419524	178050348	2864912	216	50036											
GRM6	2916	broad.mit.edu	37	chr5	178408747	178408747	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttcgcttctgcacattctGctctggatggaagaggatga	11	9	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178408747	A	A	178408747	4	1	45	1	0	0	0	0	0	1	0	0	6867	1328	46	4	92	4	GRM6	5	178408747	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	358399	178408747	2506513	217	50037											
GMDS	2762	broad.mit.edu	37	chr6	1960101	1960101	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttaatatatttactgacCtcttctgggactctcatgat	6	9	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1960101	A	A	1960101	4	1	45	1	0	0	0	0	0	1	0	0	6550	695	24	2	499	2	GMDS	6	1960101	Nonsense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08		1960101	169154966	218	50038											
SERPINB6	5269	broad.mit.edu	37	chr6	2949198	2949198	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgatgatcatattcagttCcttgccaacatatggaagca	7	9	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2949198	T	T	2949198	3	4	45	1	0	0	0	0	1	0	0	0	14218	864	30	4	459	4	SERPINB6	6	2949198	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	989097	2949198	168165869	219	50039											
TFAP2A	7020	broad.mit.edu	37	chr6	10414100	10414100	+	Intron	DEL	A	-	-													agctgcaaatgccaaaaaagAaaaaaaaaaaaaacagcaaa					rs111343501		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10414100	-	-	10414100	6	5	45	0	1	1	0	1	0	0	0	0	15910	261	9	0		0	TFAP2A	6	10414100	Intron	DEL	A	TCGA-17-Z012-01A-01W-0746-08	7464902	10414100	160700967	220	50040											
HIST1H1C	3006	broad.mit.edu	37	chr6	26056117	26056117	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggcagctttcttgggcttCgcaaccttggccttctttgg	11	11	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26056117	T	T	26056117	2	4	45	1	0	0	0	0	0	0	0	1	7191	871	31	4		4	HIST1H1C	6	26056117	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	15642017	26056117	145058950	221	50041											
HIST1H3D	8351	broad.mit.edu	37	chr6	26197482	26197482	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcttggtacgagccattgcGaacttctaaaccctgctaaa	8	11	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26197482	A	A	26197482	1	1	45	0	1	0	0	0	0	0	0	0	7225	1073	37	4		4	HIST1H3D	6	26197482	5'UTR	SNP	G	TCGA-17-Z012-01A-01W-0746-08	141365	26197482	144917585	222	50042											
GNL1	2794	broad.mit.edu	37	chr6	30514577	30514577	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacacatcattccgagccGccttggctgtcttgtaacca	8	13	2	0	rs141407258	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30514577	A	A	30514577	3	1	45	1	0	0	0	0	1	0	0	0	6599	1087	38	4	353	4	GNL1	6	30514577	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4317095	30514577	140600490	223	50043											
MDC1	9656	broad.mit.edu	37	chr6	30679197	30679197	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttcttatacctgttgtcTggaagctgcaatgggaaggg	13	6	2	0	rs145055079	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30679197	C	C	30679197	3	2	45	1	0	0	0	0	1	0	0	0	9496	1580	55	5	4092	5	MDC1	6	30679197	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	164620	30679197	140435870	224	50044											
BAT3	7917	broad.mit.edu	37	chr6	31616491	31616491	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtctgtatatccctgatcAtgtgctgagccatcaccagc	9	12	3	2	rs148812517		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31616491	G	G	31616491	3	3	45	1	0	0	0	0	1	0	0	0	1327	217	8	5	2963	5	BAT3	6	31616491	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	937294	31616491	139498576	225	50045											
C2	717	broad.mit.edu	37	chr6	31912787	31912787	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagcagttttccttgagcGgagattcaggttttttcagg	14	6	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31912787	A	A	31912787	3	1	45	1	0	0	0	0	1	0	0	0	2096	1116	39	4	2203	4	C2	6	31912787	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	296296	31912787	139202280	226	50046											
TNXB	7148	broad.mit.edu	37	chr6	32035615	32035615	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtactgcacggtgaaggagtCgaagcggccctgggggacgg	19	9	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32035615	T	T	32035615	3	4	45	1	0	0	0	0	1	0	0	0	16469	884	31	4	8454	4	TNXB	6	32035615	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	122828	32035615	139079452	227	50047											
HLA-DOA	3111	broad.mit.edu	37	chr6	32975163	32975163	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgtcctcggctgagggcaCgaagggcaggtagtggaact	17	9	0	1	rs142562508	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32975163	T	T	32975163	3	4	45	1	0	0	0	0	1	0	0	0	7267	536	19	4	226	4	HLA-DOA	6	32975163	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	939548	32975163	138139904	228	50048											
TCP11	6954	broad.mit.edu	37	chr6	35088271	35088271	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagccctgacacagcaccaTtgtggggctgaggggctctg	15	11	1	2	rs62404564	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35088271	C	C	35088271	3	2	45	1	0	0	0	0	1	0	0	0	15835	1493	52	5	659	5	TCP11	6	35088271	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	2113108	35088271	136026796	229	50049											
SFRS3	6428	broad.mit.edu	37	chr6	36568950	36568950	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctccaagaaggagaagcttCtctcgcagccggagcaggta	12	11	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36568950	G	G	36568950	3	3	45	1	0	0	0	0	1	0	0	0	14291	912	32	4	373	4	SFRS3	6	36568950	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1480679	36568950	134546117	230	50050											
KCNK17	89822	broad.mit.edu	37	chr6	39272299	39272299	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccccccagcctgctggccCagtggtttactccctgctgc	10	18	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39272299	T	T	39272299	4	4	45	1	0	0	0	0	0	1	0	0	8134	595	21	4	657	4	KCNK17	6	39272299	Nonsense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2703349	39272299	131842768	231	50051											
TREML4	285852	broad.mit.edu	37	chr6	41196603	41196603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgtcaccagctccaagcCctggacagcagttcagaagt	9	13	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41196603	A	A	41196603	3	1	45	1	0	0	0	0	1	0	0	0	16598	623	22	2	221	2	TREML4	6	41196603	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1924304	41196603	129918464	232	50052											
CUL9	23113	broad.mit.edu	37	chr6	43192148	43192148	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagactttcttctttggtGatgaggaagaggatgaagat	13	3	2	6			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43192148	A	A	43192148	3	1	45	1	0	0	0	0	1	0	0	0	4094	1290	45	4	7677	4	CUL9	6	43192148	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1995545	43192148	127922919	233	50053											
MYO6	4646	broad.mit.edu	37	chr6	76602282	76602282	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctggcccgacagaaggaGgaggaatcccaacagcaagc	13	12	0	1	rs55905349	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76602282	A	A	76602282	2	1	45	1	0	0	0	0	0	0	0	1	10175	991	35	4		4	MYO6	6	76602282	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	33410134	76602282	94512785	234	50054											
TPBG	7162	broad.mit.edu	37	chr6	83075447	83075447	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctacgtgtccttccgcaacCtgacacatctagaaagcctc	6	16	1	2	rs141575389	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83075447	T	T	83075447	2	4	45	1	0	0	0	0	0	0	0	1	16518	680	24	4		4	TPBG	6	83075447	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6473165	83075447	88039620	235	50055											
DOPEY1	23033	broad.mit.edu	37	chr6	83838852	83838852	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcatccagaccccttccGtagtcactcaggggacagca	8	16	3	1	rs147987838	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83838852	A	A	83838852	3	1	45	1	0	0	0	0	1	0	0	0	4747	1145	40	4	2020	4	DOPEY1	6	83838852	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	763405	83838852	87276215	236	50056											
KIAA1009	22832	broad.mit.edu	37	chr6	84862623	84862623	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgcagccagttcttcattGagtcttactaatttagcttt	6	8	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84862623	A	A	84862623	2	1	45	1	0	0	0	0	0	0	0	1	8273	1277	45	4		4	KIAA1009	6	84862623	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1023771	84862623	86252444	237	50057											
TBX18	9096	broad.mit.edu	37	chr6	85457788	85457788	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgcggttggtatttgtgCatagaatgaagaataatcta	10	5	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85457788	T	T	85457788	3	4	45	1	0	0	0	0	1	0	0	0	15775	710	25	4	1050	4	TBX18	6	85457788	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	595165	85457788	85657279	238	50058											
MANEA	79694	broad.mit.edu	37	chr6	96054073	96054073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgcacttcagacacgccCcagcttaatttctatcacct	5	16	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96054073	A	A	96054073	3	1	45	1	0	0	0	0	1	0	0	0	9313	623	22	2	1195	2	MANEA	6	96054073	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	10596285	96054073	75060994	239	50059											
GRIK2	2898	broad.mit.edu	37	chr6	102483232	102483232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaatcaaaaatctccaCgtatgacaaaatgtgggcct	7	9	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102483232	A	A	102483232	3	1	45	1	0	0	0	0	1	0	0	0	6840	536	19	3	2156	3	GRIK2	6	102483232	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6429159	102483232	68631835	240	50060											
SERINC1	57515	broad.mit.edu	37	chr6	122774962	122774962	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttccattttttcaacccacGattcattccatgaatgtgca	4	12	2	1	rs142096149	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122774962	A	A	122774962	3	1	45	1	0	0	0	0	1	0	0	0	14192	1059	37	4	843	4	SERINC1	6	122774962	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	20291730	122774962	48340105	241	50061											
SHPRH	257218	broad.mit.edu	37	chr6	146264574	146264574	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgttaaagggactcatgGtattagaaggtggtacatca	13	4	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146264574	A	A	146264574	3	1	45	1	0	0	0	0	1	0	0	0	14404	1261	44	4	3240	4	SHPRH	6	146264574	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	23489612	146264574	24850493	242	50062											
FNDC1	84624	broad.mit.edu	37	chr6	159652943	159652943	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggatgttgagcagaacacgGaggacaatgggaaacccgaa	14	8	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159652943	T	T	159652943	4	4	45	1	0	0	0	0	0	1	0	0	6026	1175	41	3	1441	3	FNDC1	6	159652943	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	13388369	159652943	11462124	243	50063											
PNLDC1	154197	broad.mit.edu	37	chr6	160222219	160222219	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacagtctgtcagattgGtgagtttaatatcagctgtt	9	5	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160222219	T	T	160222219	5	4	45	1	0	0	0	0	0	0	1	0	12243	1275	44	3	182	3	PNLDC1	6	160222219	Splice_Site	SNP	G	TCGA-17-Z012-01A-01W-0746-08	569276	160222219	10892848	244	50064											
CCR6	1235	broad.mit.edu	37	chr6	167549961	167549961	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaggccaggtctatgacAgacgtctatctcttgaacat	9	9	3	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167549961	C	C	167549961	2	2	45	1	0	0	0	0	0	0	0	1	2975	175	7	5		5	CCR6	6	167549961	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	7327742	167549961	3565106	245	50065											
USP42	84132	broad.mit.edu	37	chr7	6187422	6187422	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcccacccatagccccGgccagtcctctccccgcccc	5	25	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6187422	C	C	6187422	3	2	45	1	0	0	0	0	1	0	0	0	17200	1116	39	4	1327	4	USP42	7	6187422	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08		6187422	152951241	246	50066											
TMEM195	392636	broad.mit.edu	37	chr7	15427115	15427115	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacagaaaacttattgaaGaatccaggtgtggcccagaa	10	7	0	5			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15427115	C	C	15427115	3	2	45	1	0	0	0	0	1	0	0	0	16240	933	33	4	484	4	TMEM195	7	15427115	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9239693	15427115	143711548	247	50067											
DNAH11	8701	broad.mit.edu	37	chr7	21695523	21695523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaatcaggatgtttctgCacacagggcagttggaatgt	12	7	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21695523	A	A	21695523	3	1	45	1	0	0	0	0	1	0	0	0	4639	710	25	3	5147	3	DNAH11	7	21695523	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6268408	21695523	137443140	248	50068											
C7orf46	340277	broad.mit.edu	37	chr7	23731172	23731172	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggattaactggtttcagCtcgctggcggaaggctacat	14	8	1	0	rs148660873	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23731172	T	T	23731172	2	4	45	1	0	0	0	0	0	0	0	1	2421	796	28	4		4	C7orf46	7	23731172	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2035649	23731172	135407491	249	50069											
HOXA1	3198	broad.mit.edu	37	chr7	27134293	27134293	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcagcgatctccaccctGcgggcgcgcgtcaggtactt	13	14	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27134293	T	T	27134293	2	4	45	1	0	0	0	0	0	0	0	1	7355	1306	46	3		3	HOXA1	7	27134293	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3403121	27134293	132004370	250	50070											
NOD1	10392	broad.mit.edu	37	chr7	30491863	30491863	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatccagcagaagaggggCacagagcacaggctgcagag	15	9	0	5			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30491863	A	A	30491863	2	1	45	1	0	0	0	0	0	0	0	1	10611	697	25	3		3	NOD1	7	30491863	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3357570	30491863	128646800	251	50071											
FAM188B	84182	broad.mit.edu	37	chr7	30811121	30811121	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccagagccatggacagcctCttcgtggaggaggtggccgc	16	12	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30811121	G	G	30811121	2	3	45	1	0	0	0	0	0	0	0	1	5561	900	32	4		4	FAM188B	7	30811121	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	319258	30811121	128327542	252	50072											
FAM188B	84182	broad.mit.edu	37	chr7	30825544	30825544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagaggatgggagagaattCcaggccaaagtctggtctga	15	6	2	3	rs75843887	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30825544	A	A	30825544	3	1	45	1	0	0	0	0	1	0	0	0	5561	855	30	3	613	3	FAM188B	7	30825544	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	14423	30825544	128313119	253	50073											
HECW1	23072	broad.mit.edu	37	chr7	43540857	43540857	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgtccccctgcaggctgcCttccaccctgggtatagctt	9	16	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43540857	A	A	43540857	2	1	45	1	0	0	0	0	0	0	0	1	7109	668	24	2		2	HECW1	7	43540857	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	12715313	43540857	115597806	254	50074											
UBE2D4	51619	broad.mit.edu	37	chr7	43988239	43988239	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtctttgcaggttgctttCacaaccaaaatttatcaccc	5	11	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43988239	T	T	43988239	2	4	45	1	0	0	0	0	0	0	0	1	16977	825	29	4		4	UBE2D4	7	43988239	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	447382	43988239	115150424	255	50075											
UBE2D4	51619	broad.mit.edu	37	chr7	43988284	43988284	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcaacagcaatggcagcatCtgccttgatatcctgcggtc	9	12	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43988284	G	G	43988284	3	3	45	1	0	0	0	0	1	0	0	0	16977	903	32	4	270	4	UBE2D4	7	43988284	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	45	43988284	115150379	256	50076											
NUDCD3	23386	broad.mit.edu	37	chr7	44432049	44432049	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctccctccaggatggcGttccaccaatactcgcccac	6	18	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44432049	A	A	44432049	2	1	45	1	0	0	0	0	0	0	0	1	10819	1136	40	4		4	NUDCD3	7	44432049	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	443765	44432049	114706614	257	50077											
TBRG4	9238	broad.mit.edu	37	chr7	45148653	45148653	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtagggagtagatgctcGttccttctccaccggctcca	10	12	1	1	rs11541073	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45148653	T	T	45148653	2	4	45	1	0	0	0	0	0	0	0	1	15771	1153	40	3		3	TBRG4	7	45148653	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	716604	45148653	113990010	258	50078											
PTPN12	5782	broad.mit.edu	37	chr7	77256749	77256749	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctgatcttgtggatcatGataacacttcaccactcttc	5	13	4	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77256749	A	A	77256749	3	1	45	1	0	0	0	0	1	0	0	0	12887	1290	45	4	1803	4	PTPN12	7	77256749	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	32108096	77256749	81881914	259	50079											
PCLO	27445	broad.mit.edu	37	chr7	82545269	82545269	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttcctccaaacctattctCaagtctaaactattgtactt	2	12	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82545269	T	T	82545269	2	4	45	1	0	0	0	0	0	0	0	1	11677	825	29	4		4	PCLO	7	82545269	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5288520	82545269	76593394	260	50080											
SEMA3D	223117	broad.mit.edu	37	chr7	84644447	84644447	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggtctctggcaagacaaCagtctgcgcaagctttccca	11	12	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84644447	T	T	84644447	3	4	45	1	0	0	0	0	1	0	0	0	14140	478	17	4	718	4	SEMA3D	7	84644447	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2099178	84644447	74494216	261	50081											
STEAP2	261729	broad.mit.edu	37	chr7	89856779	89856779	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaccgatgagaaggtcagaGagatatttgtttctcaacat	9	6	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89856779	A	A	89856779	2	1	45	1	0	0	0	0	0	0	0	1	15396	933	33	4		4	STEAP2	7	89856779	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5212332	89856779	69281884	262	50082											
CDK14	5218	broad.mit.edu	37	chr7	90585061	90585061	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacatactccaacgaagtGgttaccttgtggtacagacc	8	12	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90585061	T	T	90585061	2	4	45	1	0	0	0	0	0	0	0	1	3160	1335	47	2		2	CDK14	7	90585061	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	728282	90585061	68553602	263	50083											
AKAP9	10142	broad.mit.edu	37	chr7	91726960	91726960	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggttcttcaacagaaaataGaaggagaaacaaaagaatca	9	5	3	4	rs61757664	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91726960	A	A	91726960	3	1	45	1	0	0	0	0	1	0	0	0	459	943	33	4	10625	4	AKAP9	7	91726960	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1141899	91726960	67411703	264	50084											
ANKIB1	54467	broad.mit.edu	37	chr7	91981814	91981814	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgaaaataatcctgccAttaaatggtgtcctactcca	6	9	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91981814	T	T	91981814	3	4	45	1	0	0	0	0	1	0	0	0	630	217	8	5	1285	5	ANKIB1	7	91981814	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	254854	91981814	67156849	265	50085											
PPP1R9A	55607	broad.mit.edu	37	chr7	94540452	94540452	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccttcaccacaaagccaaCtgttagaagatgctgaagct	7	12	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94540452	G	G	94540452	3	3	45	1	0	0	0	0	1	0	0	0	12479	564	20	4	1029	4	PPP1R9A	7	94540452	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2558638	94540452	64598211	266	50086											
PPP1R9A	55607	broad.mit.edu	37	chr7	94540565	94540565	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttctgcatccagttgtggAaaagaagtacctgaagattc	10	8	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94540565	G	G	94540565	2	3	45	1	0	0	0	0	0	0	0	1	12479	233	9	5		5	PPP1R9A	7	94540565	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	113	94540565	64598098	267	50087											
SERPINE1	5054	broad.mit.edu	37	chr7	100771789	100771789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacctggcctcagacttcGgggtgagggtgtttcagcag	14	12	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100771789	T	T	100771789	3	4	45	1	0	0	0	0	1	0	0	0	14224	1116	39	1	117	1	SERPINE1	7	100771789	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	6231224	100771789	58366874	268	50088											
SRPK2	6733	broad.mit.edu	37	chr7	104782689	104782689	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcataggagctgctatatgTgtaatcactttctgcatttg	8	7	3	0	rs55743527		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104782689	G	G	104782689	3	3	45	1	0	0	0	0	1	0	0	0	15278	1696	59	5	814	5	SRPK2	7	104782689	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	4010900	104782689	54355974	269	50089											
CADPS2	93664	broad.mit.edu	37	chr7	122054130	122054130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttactcacctctcttcCctgagggtttccaagaattt	5	12	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122054130	A	A	122054130	1	1	45	0	1	0	0	0	0	0	0	0	2597	638	22	2		2	CADPS2	7	122054130	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	17271441	122054130	37084533	270	50090											
HYAL4	23553	broad.mit.edu	37	chr7	123516947	123516947	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaagatgtggaacgcgcCcagttaccttcacttgaacc	10	11	1	2	rs141828412	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123516947	T	T	123516947	3	4	45	1	0	0	0	0	1	0	0	0	7536	623	22	4	1194	4	HYAL4	7	123516947	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1462817	123516947	35621716	271	50091											
SLC37A3	84255	broad.mit.edu	37	chr7	140080194	140080194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggagcaacgaataactaCaaaatagagagaatacagat	8	6	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140080194	A	A	140080194	1	1	45	0	1	0	0	0	0	0	0	0	14713	493	17	3		3	SLC37A3	7	140080194	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	16563247	140080194	19058469	272	50092											
BRAF	673	broad.mit.edu	37	chr7	140500244	140500244	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacgcctcttcctgtggtaTtgggtggtgttcaaagaact	13	8	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140500244	C	C	140500244	3	2	45	1	0	0	0	0	1	0	0	0	1505	1493	52	5	1450	5	BRAF	7	140500244	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	420050	140500244	18638419	273	50093											
MGAM	8972	broad.mit.edu	37	chr7	141734094	141734094	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtacctgttctgcaagactCtctgtatggatgcagtgcag	12	9	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141734094	G	G	141734094	3	3	45	1	0	0	0	0	1	0	0	0	9634	913	32	4	1756	4	MGAM	7	141734094	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1233850	141734094	17404569	274	50094											
PIP	5304	broad.mit.edu	37	chr7	142836663	142836663	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcgggaattaggcatctgCcctgatgatgctgctgtaat	11	8	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142836663	A	A	142836663	4	1	45	1	0	0	0	0	0	1	0	0	12030	747	26	3	383	3	PIP	7	142836663	Nonsense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1102569	142836663	16302000	275	50095											
EPHA1	2041	broad.mit.edu	37	chr7	143096786	143096786	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttcctcatagccaggctCacagtggcaccgtcctacag	8	16	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143096786	T	T	143096786	3	4	45	1	0	0	0	0	1	0	0	0	5207	835	29	4	2197	4	EPHA1	7	143096786	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	260123	143096786	16041877	276	50096											
GATA4	2626	broad.mit.edu	37	chr8	11614467	11614467	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcaggcagtgagagccttCctcccgccagcggtgcttcc	11	16	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11614467	T	T	11614467	3	4	45	1	0	0	0	0	1	0	0	0	6318	855	30	4	1039	4	GATA4	8	11614467	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08		11614467	134749555	277	50097											
DEFB136	613210	broad.mit.edu	37	chr8	11831566	11831566	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcggacacccgaagaaacaTacggctttctggctagtgca	12	11	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11831566	C	C	11831566	2	2	45	1	0	0	0	0	0	0	0	1	4460	1393	49	5		5	DEFB136	8	11831566	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	217099	11831566	134532456	278	50098											
DOCK5	80005	broad.mit.edu	37	chr8	25174610	25174610	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaagaatgtggaggtgaCgatgtctgtgcacgatgagg	16	6	1	3	rs61732769	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25174610	T	T	25174610	3	4	45	1	0	0	0	0	1	0	0	0	4730	536	19	4	1460	4	DOCK5	8	25174610	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	13343044	25174610	121189412	279	50099											
BAG4	9530	broad.mit.edu	37	chr8	38065246	38065246	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgtcagactgaagcacccCctcttagggggcaggttcca	11	13	2	2	rs150045830	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38065246	G	G	38065246	3	3	45	1	0	0	0	0	1	0	0	0	1294	623	22	4	605	4	BAG4	8	38065246	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	12890636	38065246	108298776	280	50100											
ANK1	286	broad.mit.edu	37	chr8	41525790	41525790	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgggctctcacctgcaCcacttgggtgaaggtgttct	11	14	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41525790	T	T	41525790	3	4	45	1	0	0	0	0	1	0	0	0	620	507	18	4	598	4	ANK1	8	41525790	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3460544	41525790	104838232	281	50101											
SDR16C5	195814	broad.mit.edu	37	chr8	57228594	57228594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcggctactctatacaCtccttccttttggctgcaat	7	13	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57228594	A	A	57228594	3	1	45	1	0	0	0	0	1	0	0	0	14084	565	20	3	640	3	SDR16C5	8	57228594	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	15702804	57228594	89135428	282	50102											
TOX	9760	broad.mit.edu	37	chr8	59739471	59739471	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttatagacctgcaacaaCagcaaagagtcttaaattag	6	7	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59739471	G	G	59739471	1	3	45	0	1	0	0	0	0	0	0	0	16501	493	17	4		4	TOX	8	59739471	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2510877	59739471	86624551	283	50103											
LRRCC1	85444	broad.mit.edu	37	chr8	86050664	86050664	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaaaaatttgaaaacaagGaaaagaaacttaaagcggaa	8	3	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86050664	T	T	86050664	4	4	45	1	0	0	0	0	0	1	0	0	9113	1175	41	3	2860	3	LRRCC1	8	86050664	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	26311193	86050664	60313358	284	50104											
CDH17	1015	broad.mit.edu	37	chr8	95195803	95195804	+	Intron	DEL	AA	-	-													aaactaactcaaaatggatcAaagacctaaatagaaaaact					rs112170028		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95195804	-	-	95195803	6	5	45	0	1	1	0	1	0	0	0	0	3132	145	5	0		0	CDH17	8	95195803	Intron	DEL	AA	TCGA-17-Z012-01A-01W-0746-08	9145139	95195803	51168219	285	50105											
NOV	4856	broad.mit.edu	37	chr8	120430441	120430441	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctggatgtgctactgcctGagcctaactgcccagctcca	10	14	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120430441	A	A	120430441	3	1	45	1	0	0	0	0	1	0	0	0	10648	1291	45	4	464	4	NOV	8	120430441	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	25234638	120430441	25933581	286	50106											
FAM135B	51059	broad.mit.edu	37	chr8	139164679	139164679	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaatcagatatgatggatGaagatctcttgatgaccccg	10	8	2	7			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139164679	A	A	139164679	3	1	45	1	0	0	0	0	1	0	0	0	5495	1294	45	4	2213	4	FAM135B	8	139164679	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	18734238	139164679	7199343	287	50107											
TRAPPC9	83696	broad.mit.edu	37	chr8	141407834	141407834	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccaactcaatcactcccGcattcttatactgcagggtg	6	14	3	0	rs143778652	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141407834	A	A	141407834	3	1	45	1	0	0	0	0	1	0	0	0	16589	1087	38	4	2495	4	TRAPPC9	8	141407834	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2243155	141407834	4956188	288	50108											
SCRIB	23513	broad.mit.edu	37	chr8	144890953	144890953	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccagggtgcgtgggggccAttgtgccagcccccgggagc	18	14	0	0	rs111919660	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144890953	G	G	144890953	2	3	45	1	0	0	0	0	0	0	0	1	14050	214	8	5		5	SCRIB	8	144890953	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3483119	144890953	1473069	289	50109											
PLEC	5339	broad.mit.edu	37	chr8	144993230	144993230	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgactgcatcacctcccacaGggacatggtggagccgccgt	12	15	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144993230	A	A	144993230	2	1	45	1	0	0	0	0	0	0	0	1	12147	991	35	4		4	PLEC	8	144993230	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	102277	144993230	1370792	290	50110											
KIAA2026	158358	broad.mit.edu	37	chr9	5969196	5969196	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggacttaatagagaagtCattattttcgatagaaaagc	10	4	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5969196	A	A	5969196	3	1	45	1	0	0	0	0	1	0	0	0	8340	826	29	3	5300	3	KIAA2026	9	5969196	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08		5969196	135244235	291	50111											
PTPRD	5789	broad.mit.edu	37	chr9	8460493	8460493	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaacccagatcaagccttCttcttcatccgtgattggct	6	13	4	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8460493	T	T	8460493	3	4	45	1	0	0	0	0	1	0	0	0	12907	922	32	4	2066	4	PTPRD	9	8460493	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2491297	8460493	132752938	292	50112											
PTPRD	5789	broad.mit.edu	37	chr9	8518415	8518415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcactacaggagttcctgGaggtttgggtaaggcttgga	16	6	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8518415	T	T	8518415	3	4	45	1	0	0	0	0	1	0	0	0	12907	1174	41	3	4934	3	PTPRD	9	8518415	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	57922	8518415	132695016	293	50113											
BNC2	54796	broad.mit.edu	37	chr9	16436019	16436019	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctccgaagactcagactCgttctcatagtcccgctcag	10	14	3	2	rs142534651		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16436019	T	T	16436019	3	4	45	1	0	0	0	0	1	0	0	0	1481	893	31	4	1134	4	BNC2	9	16436019	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7917604	16436019	124777412	294	50114											
SPINK4	27290	broad.mit.edu	37	chr9	33248451	33248451	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacaggacatccagatcatGaaagatggcaaatgctgatc	9	8	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33248451	A	A	33248451	3	1	45	1	0	0	0	0	1	0	0	0	15179	1290	45	4	257	4	SPINK4	9	33248451	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	16812432	33248451	107964980	295	50115											
SECISBP2	79048	broad.mit.edu	37	chr9	91972334	91972334	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctttgaccaggtgggctgGatgacactttgcacacaatt	10	10	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91972334	A	A	91972334	3	1	45	1	0	0	0	0	1	0	0	0	14119	1174	41	4	2180	4	SECISBP2	9	91972334	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	58723883	91972334	49241097	296	50116											
SYK	6850	broad.mit.edu	37	chr9	93636989	93636989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctacccatggacacagagGtgtacgagagcccctacgcg	11	15	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93636989	T	T	93636989	3	4	45	1	0	0	0	0	1	0	0	0	15557	1261	44	3	1069	3	SYK	9	93636989	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1664655	93636989	47576442	297	50117											
HSD17B3	3293	broad.mit.edu	37	chr9	99003133	99003133	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatcagcagtcttggttatCacatttgtatttagatactt	6	7	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99003133	G	G	99003133	2	3	45	1	0	0	0	0	0	0	0	1	7452	813	29	4		4	HSD17B3	9	99003133	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5366144	99003133	42210298	298	50118											
GABBR2	9568	broad.mit.edu	37	chr9	101216455	101216455	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaacttgctgggccccacGcctgaccgcttgttgttgta	12	12	0	1	rs151275459	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101216455	A	A	101216455	2	1	45	1	0	0	0	0	0	0	0	1	6216	1074	38	4		4	GABBR2	9	101216455	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2213322	101216455	39996976	299	50119											
COL15A1	1306	broad.mit.edu	37	chr9	101767192	101767192	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctattcagggtccagataatGaagagcgtttagcagcaaca	10	8	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101767192	A	A	101767192	3	1	45	1	0	0	0	0	1	0	0	0	3704	1291	45	4	1247	4	COL15A1	9	101767192	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	550737	101767192	39446239	300	50120											
SMC2	10592	broad.mit.edu	37	chr9	106860779	106860779	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatggagtcaatgccaacaAcaccagagtacaggatctct	8	11	2	1	rs61755310	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106860779	C	C	106860779	3	2	45	1	0	0	0	0	1	0	0	0	14897	43	2	5	381	5	SMC2	9	106860779	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	5093587	106860779	34352652	301	50121											
OR13F1	138805	broad.mit.edu	37	chr9	107267284	107267284	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacagcccacctgatggtGgtagttttgttctatgggac	12	9	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107267284	A	A	107267284	2	1	45	1	0	0	0	0	0	0	0	1	11035	1335	47	4		4	OR13F1	9	107267284	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	406505	107267284	33946147	302	50122											
OR13D1	286365	broad.mit.edu	37	chr9	107457527	107457527	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttctctacctgttcagcGcactcgattgtggtcatctt	8	13	4	0	rs148110858		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107457527	A	A	107457527	2	1	45	1	0	0	0	0	0	0	0	1	11034	1074	38	4		4	OR13D1	9	107457527	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	190243	107457527	33755904	303	50123											
LPAR1	1902	broad.mit.edu	37	chr9	113704059	113704059	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggaaaaccgtaatgtgcctCtcgattgcaatagccagtaa	9	10	1	0	rs41279057	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113704059	T	T	113704059	2	4	45	1	0	0	0	0	0	0	0	1	8991	912	32	4		4	LPAR1	9	113704059	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6246532	113704059	27509372	304	50124											
RGS3	5998	broad.mit.edu	37	chr9	116346507	116346507	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcagaactcgctgcggCgccggacgcacagcgagggc	17	13	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116346507	T	T	116346507	3	4	45	1	0	0	0	0	1	0	0	0	13415	768	27	4	3146	4	RGS3	9	116346507	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2642448	116346507	24866924	305	50125											
ORM1	5004	broad.mit.edu	37	chr9	117094123	117094123	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctgacaagccagagacgAccaaggagcaactgggagag	14	10	0	3	rs147741369	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117094123	T	T	117094123	3	4	45	1	0	0	0	0	1	0	0	0	11361	275	10	5		5	ORM1	9	117094123	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	747616	117094123	24119308	306	50126											
OR1N2	138882	broad.mit.edu	37	chr9	125316032	125316032	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagccatccctcatttctAttgtgatcctagtgctctcc	6	13	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125316032	G	G	125316032	3	3	45	1	0	0	0	0	1	0	0	0	11064	449	16	5	586	5	OR1N2	9	125316032	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	8221909	125316032	15897399	307	50127											
ZNF79	7633	broad.mit.edu	37	chr9	130191113	130191113	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttctctttctctagtaCtgccttccccaggccctgcc	5	16	2	0	rs150837443	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130191113	T	T	130191113	2	4	45	1	0	0	0	0	0	0	0	1	18290	564	20	4		4	ZNF79	9	130191113	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4875081	130191113	11022318	308	50128											
PKN3	29941	broad.mit.edu	37	chr9	131475832	131475832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcggcagctatgtggcGtggccttcctgagacttgag	15	10	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131475832	T	T	131475832	3	4	45	1	0	0	0	0	1	0	0	0	12076	1145	40	3	1181	3	PKN3	9	131475832	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1284719	131475832	9737599	309	50129											
CRAT	1384	broad.mit.edu	37	chr9	131860363	131860363	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccgagcggatggtgtcggTgcggcccaggtgaaacatgc	17	10	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131860363	C	C	131860363	3	2	45	1	0	0	0	0	1	0	0	0	3879	1696	59	5	503	5	CRAT	9	131860363	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	384531	131860363	9353068	310	50130											
TTF1	7270	broad.mit.edu	37	chr9	135275495	135275495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgctggtggccctgtcCttgatgttaggaatgaactc	12	8	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135275495	A	A	135275495	3	1	45	1	0	0	0	0	1	0	0	0	16844	680	24	2	1235	2	TTF1	9	135275495	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3415132	135275495	5937936	311	50131											
KCNT1	57582	broad.mit.edu	37	chr9	138648751	138648751	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ataataagcttcctggagacGatgcttctcatctacctcag	7	11	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138648751	C	C	138648751	2	2	45	1	0	0	0	0	0	0	0	1	8161	1045	37	4		4	KCNT1	9	138648751	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3373256	138648751	2564680	312	50132											
SEC16A	9919	broad.mit.edu	37	chr9	139371657	139371657	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctctgcactcctgttcatCtcaggcccaggaggtgctga	10	14	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139371657	G	G	139371657	3	3	45	1	0	0	0	0	1	0	0	0	14099	912	32	4	6782	4	SEC16A	9	139371657	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	722906	139371657	1841774	313	50133											
LARP4B	23185	broad.mit.edu	37	chr10	875638	875638	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taccttaattggttttccttGaaaagttttgacttcttctc	5	8	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	875638	C	C	875638	3	2	45	1	0	0	0	0	1	0	0	0	8703	1299	45	4	1354	4	LARP4B	10	875638	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08		875638	134659109	314	50134											
NET1	10276	broad.mit.edu	37	chr10	5498572	5498572	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatatctttagaattcGcttccatgacccctctccag	4	12	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5498572	A	A	5498572	3	1	45	1	0	0	0	0	1	0	0	0	10433	1087	38	4	1549	4	NET1	10	5498572	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4622934	5498572	130036175	315	50135											
TAF3	83860	broad.mit.edu	37	chr10	7866437	7866437	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcaagaacaatgtacttcAgtttcctcaacctggaagta	7	9	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7866437	T	T	7866437	3	4	45	1	0	0	0	0	1	0	0	0	15644	188	7	5	329	5	TAF3	10	7866437	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	2367865	7866437	127668310	316	50136											
CAMK1D	57118	broad.mit.edu	37	chr10	12595329	12595329	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggcaaggaaagcagcatAgagaatgagatagccgtcct	13	7	0	2	rs34194224	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12595329	G	G	12595329	3	3	45	1	0	0	0	0	1	0	0	0	2623	410	15	5	204	5	CAMK1D	10	12595329	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	4728892	12595329	122939418	317	50137											
SEPHS1	22929	broad.mit.edu	37	chr10	13375926	13375926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcctgcttcctcagctgCgtctttaaaaccttggataa	7	11	2	0	rs149225659	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13375926	T	T	13375926	3	4	45	1	0	0	0	0	1	0	0	0	14167	768	27	4	747	4	SEPHS1	10	13375926	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	780597	13375926	122158821	318	50138											
DCLRE1C	64421	broad.mit.edu	37	chr10	14976393	14976393	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatacctggactcctaattCttcactaaggttggtgaaca	7	11	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14976393	T	T	14976393	3	4	45	1	0	0	0	0	1	0	0	0	4329	922	32	4	1442	4	DCLRE1C	10	14976393	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1600467	14976393	120558354	319	50139											
ITGA8	8516	broad.mit.edu	37	chr10	15714695	15714695	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccagtttcctgaggatatCcttgaatgagtaatttgcaa	9	7	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15714695	T	T	15714695	3	4	45	1	0	0	0	0	1	0	0	0	7952	855	30	4	2557	4	ITGA8	10	15714695	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	738302	15714695	119820052	320	50140											
CUBN	8029	broad.mit.edu	37	chr10	17113512	17113512	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttggctttggggctggtgGatggtccacctacaggttct	14	9	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17113512	T	T	17113512	2	4	45	1	0	0	0	0	0	0	0	1	4084	1164	41	3		3	CUBN	10	17113512	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1398817	17113512	118421235	321	50141											
PLXDC2	84898	broad.mit.edu	37	chr10	20335869	20335869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccagccgggatttatgGgtgaacatagaccaaatgga	12	8	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20335869	T	T	20335869	3	4	45	1	0	0	0	0	1	0	0	0	12213	1241	43	2	406	2	PLXDC2	10	20335869	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3222357	20335869	115198878	322	50142											
GPR158	57512	broad.mit.edu	37	chr10	25861798	25861798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgcctcattgaccgctggGactacatgacagcagttggt	12	10	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25861798	T	T	25861798	3	4	45	1	0	0	0	0	1	0	0	0	6728	1174	41	3	1761	3	GPR158	10	25861798	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5525929	25861798	109672949	323	50143											
GAD2	2572	broad.mit.edu	37	chr10	26559611	26559611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccacagctggaaccaccGtgtacggagcatttgacccc	11	14	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26559611	T	T	26559611	3	4	45	1	0	0	0	0	1	0	0	0	6240	1145	40	3	1056	3	GAD2	10	26559611	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	697813	26559611	108975136	324	50144											
ZNF239	8187	broad.mit.edu	37	chr10	44053339	44053339	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgagactttcaaaggcaaAtatgtttcactttcaatgtt	6	7	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44053339	G	G	44053339	2	3	45	1	0	0	0	0	0	0	0	1	17917	108	4	5		5	ZNF239	10	44053339	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	17493728	44053339	91481408	325	50145											
RASSF4	83937	broad.mit.edu	37	chr10	45480383	45480383	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagcgcatccggcgacacCggttctctatcaacggccac	9	18	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45480383	T	T	45480383	3	4	45	1	0	0	0	0	1	0	0	0	13196	643	23	4	514	4	RASSF4	10	45480383	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1427044	45480383	90054364	326	50146											
TMEM26	219623	broad.mit.edu	37	chr10	63170221	63170221	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggcaaccatgttctcctttCaggccttctgactgacttct	7	14	4	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63170221	G	G	63170221	2	3	45	1	0	0	0	0	0	0	0	1	16274	813	29	4		4	TMEM26	10	63170221	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	17689838	63170221	72364526	327	50147											
MYPN	84665	broad.mit.edu	37	chr10	69881880	69881880	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgaagtgaatcacgccctgGaacagcaggaagccaagagg	13	9	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69881880	A	A	69881880	3	1	45	1	0	0	0	0	1	0	0	0	10192	1175	41	4	687	4	MYPN	10	69881880	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	6711659	69881880	65652867	328	50148											
NRG3	10718	broad.mit.edu	37	chr10	84498358	84498358	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggctaccaaggagtcCgttgtgatcaatttctgccg	11	9	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84498358	T	T	84498358	3	4	45	1	0	0	0	0	1	0	0	0	10744	652	23	4	1157	4	NRG3	10	84498358	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	14616478	84498358	51036389	329	50149											
OPN4	94233	broad.mit.edu	37	chr10	88419700	88419700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatggcgagtccctgtgGcagcggcagcggctgcagag	18	11	0	1	rs145634412	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88419700	T	T	88419700	3	4	45	1	0	0	0	0	1	0	0	0	10976	1212	42	3	908	3	OPN4	10	88419700	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3921342	88419700	47115047	330	50150											
PDLIM1	9124	broad.mit.edu	37	chr10	97031411	97031411	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctacagtgagagtcaagTtgtctgtgcagcctttgatt	12	7	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97031411	C	C	97031411	3	2	45	1	0	0	0	0	1	0	0	0	11773	1725	60	5	786	5	PDLIM1	10	97031411	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	8611711	97031411	38503336	331	50151											
SFXN3	81855	broad.mit.edu	37	chr10	102798400	102798400	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctttctgtctctccacagCgccgcccctggctgggggca	12	16	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102798400	T	T	102798400	3	4	45	1	0	0	0	0	1	0	0	0	14309	782	27	4	818	4	SFXN3	10	102798400	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5766989	102798400	32736347	332	50152											
PDCD11	22984	broad.mit.edu	37	chr10	105178380	105178380	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctgtgtctgagccagagcGaggggcgtgttgtatccttg	15	9	1	2	rs61751510	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105178380	A	A	105178380	3	1	45	1	0	0	0	0	1	0	0	0	11711	1059	37	4	2149	4	PDCD11	10	105178380	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2379980	105178380	30356367	333	50153											
NRAP	4892	broad.mit.edu	37	chr10	115389448	115389448	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtagtccaggtcactggCgagagtttgggccttcttag	13	10	2	1	rs2286734		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115389448	T	T	115389448	3	4	45	1	0	0	0	0	1	0	0	0	10733	768	27	4	3349	4	NRAP	10	115389448	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	10211068	115389448	20145299	334	50154											
DCLRE1A	9937	broad.mit.edu	37	chr10	115609761	115609761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccttcatcatacttatccCgagttaagaagctgttcact	5	11	3	1	rs34407062	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115609761	T	T	115609761	3	4	45	1	0	0	0	0	1	0	0	0	4327	652	23	4	2051	4	DCLRE1A	10	115609761	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	220313	115609761	19924986	335	50155											
LRRC27	80313	broad.mit.edu	37	chr10	134165171	134165171	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgtcaccgtaccaaatggcGatccgagcaaaaagactgga	10	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165171	A	A	134165171	2	1	45	1	0	0	0	0	0	0	0	1	9068	1058	37	4		4	LRRC27	10	134165171	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	18555410	134165171	1369576	336	50156											
OR51A4	401666	broad.mit.edu	37	chr11	4968172	4968172	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcatgcaaggagggctcTgtcttgatgataaaaagaat	12	6	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4968172	C	C	4968172	2	2	45	1	0	0	0	0	0	0	0	1	11181	1567	55	5		5	OR51A4	11	4968172	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08		4968172	130038344	337	50157											
MICALCL	84953	broad.mit.edu	37	chr11	12379966	12379966	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacgcatcagagaaaaagcCgaggaccagcactttgaaag	10	10	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12379966	T	T	12379966	2	4	45	1	0	0	0	0	0	0	0	1	9665	639	23	4		4	MICALCL	11	12379966	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7411794	12379966	122626550	338	50158											
PIK3C2A	5286	broad.mit.edu	37	chr11	17172206	17172206	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatttggtcttcaatctgTtcacaagaaagaagaaatta	7	5	4	3	rs68074956		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17172206	A	A	17172206	1	1	45	0	1	0	0	0	0	0	0	0	12004	1740	60	5		5	PIK3C2A	11	17172206	Intron	SNP	T	TCGA-17-Z012-01A-01W-0746-08	4792240	17172206	117834310	339	50159											
PDHX	8050	broad.mit.edu	37	chr11	35016541	35016541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgcattttggcggttgGgaggttccgacctgtgctga	16	9	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35016541	T	T	35016541	3	4	45	1	0	0	0	0	1	0	0	0	11761	1232	43	2	1489	2	PDHX	11	35016541	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	17844335	35016541	99989975	340	50160											
ACCSL	390110	broad.mit.edu	37	chr11	44069884	44069884	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtgcctcttccttctgagGactctaggggtgatgtcaga	12	9	4	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44069884	A	A	44069884	3	1	45	1	0	0	0	0	1	0	0	0	134	1174	41	4	300	4	ACCSL	11	44069884	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9053343	44069884	90936632	341	50161											
ACCSL	390110	broad.mit.edu	37	chr11	44080126	44080126	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtacatttgaagaagaaCggctcctctattgccgcttc	8	12	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44080126	T	T	44080126	3	4	45	1	0	0	0	0	1	0	0	0	134	527	19	4	1551	4	ACCSL	11	44080126	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	10242	44080126	90926390	342	50162											
KIAA0652	9776	broad.mit.edu	37	chr11	46685569	46685569	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtttactgtcacaaaggCacattttcagacccctactc	6	12	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46685569	T	T	46685569	1	4	45	0	1	0	0	0	0	0	0	0	8258	725	25	4		4	KIAA0652	11	46685569	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2605443	46685569	88320947	343	50163											
PTPRJ	5795	broad.mit.edu	37	chr11	48186000	48186000	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaccagatagagaatgagaAcaccgtggatgtgtatggga	13	6	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48186000	T	T	48186000	3	4	45	1	0	0	0	0	1	0	0	0	12912	43	2	5	3891	5	PTPRJ	11	48186000	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1500431	48186000	86820516	344	50164											
OR8K5	219453	broad.mit.edu	37	chr11	55927704	55927704	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaggtagatgacgaggaaGactccaaaaaggggaatctg	13	5	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55927704	A	A	55927704	2	1	45	1	0	0	0	0	0	0	0	1	11339	929	33	4		4	OR8K5	11	55927704	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7741704	55927704	79078812	345	50165											
OR5R1	219479	broad.mit.edu	37	chr11	56185153	56185153	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtctgagcaggacagagCtaagaaggggaggtcatcac	15	7	3	3	rs61901985	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56185153	T	T	56185153	3	4	45	1	0	0	0	0	1	0	0	0	11274	797	28	4	420	4	OR5R1	11	56185153	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	257449	56185153	78821363	346	50166											
OR5R1	219479	broad.mit.edu	37	chr11	56185651	56185651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggcctgaagctctggccGgttggtaattcctttcagaa	13	10	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56185651	T	T	56185651	2	4	45	1	0	0	0	0	0	0	0	1	11274	1115	39	1		1	OR5R1	11	56185651	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	498	56185651	78820865	347	50167											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57077132	57077132	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggatcctctctctcctggcCggccagcatccctgctgccc	9	20	2	0	rs149470322	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57077132	T	T	57077132	3	4	45	1	0	0	0	0	1	0	0	0	16443	652	23	4	2160	4	TNKS1BP1	11	57077132	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	891481	57077132	77929384	348	50168											
SLC43A3	29015	broad.mit.edu	37	chr11	57175355	57175355	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcagaagaatggcaagcatGaacatcacattcacctgcag	9	10	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57175355	A	A	57175355	2	1	45	1	0	0	0	0	0	0	0	1	14748	1281	45	4		4	SLC43A3	11	57175355	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	98223	57175355	77831161	349	50169											
PYGM	5837	broad.mit.edu	37	chr11	64527201	64527201	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtcgcgcacggtatggGccagagcaaagtagtagtct	16	8	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64527201	A	A	64527201	3	1	45	1	0	0	0	0	1	0	0	0	12970	1203	42	4	2438	4	PYGM	11	64527201	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7351846	64527201	70479315	350	50170											
ALDH3B2	222	broad.mit.edu	37	chr11	67434391	67434391	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcaccaggttcgtggaccGtggttcatccttcatccagg	11	13	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67434391	A	A	67434391	3	1	45	1	0	0	0	0	1	0	0	0	500	1144	40	4	1173	4	ALDH3B2	11	67434391	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2907190	67434391	67572125	351	50171											
TCIRG1	10312	broad.mit.edu	37	chr11	67815003	67815003	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctggccatggtccttgcGgagaaccgaccggctgtgaa	14	13	0	2	rs147119709		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67815003	A	A	67815003	2	1	45	1	0	0	0	0	0	0	0	1	15825	1103	39	4		4	TCIRG1	11	67815003	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	380612	67815003	67191513	352	50172											
ARAP1	116985	broad.mit.edu	37	chr11	72421641	72421641	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttccgctccactgcaggaGaagggtagaggagtaagccc	13	12	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72421641	C	C	72421641	1	2	45	0	1	0	0	0	0	0	0	0	840	957	33	4		4	ARAP1	11	72421641	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4606638	72421641	62584875	353	50173											
DNAJB13	374407	broad.mit.edu	37	chr11	73675980	73675980	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttggggggctccagggccGaggggtcaagaagcaggacc	18	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73675980	A	A	73675980	3	1	45	1	0	0	0	0	1	0	0	0	4658	1058	37	4	406	4	DNAJB13	11	73675980	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1254339	73675980	61330536	354	50174											
SLCO2B1	11309	broad.mit.edu	37	chr11	74907574	74907574	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagtgcccaccctgggctGgagctgtctccaagctgcat	11	15	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74907574	A	A	74907574	2	1	45	1	0	0	0	0	0	0	0	1	14841	1335	47	4		4	SLCO2B1	11	74907574	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1231594	74907574	60098942	355	50175											
PRKRIR	5612	broad.mit.edu	37	chr11	76062159	76062159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaggaccttcagcaatgCatacacattaggaaaaaact	6	10	1	0	rs142544216	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76062159	A	A	76062159	3	1	45	1	0	0	0	0	1	0	0	0	12632	710	25	3	254	3	PRKRIR	11	76062159	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1154585	76062159	58944357	356	50176											
CCDC81	60494	broad.mit.edu	37	chr11	86133743	86133743	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagttcctgcctggctccCggttgcttgtgtaaaactca	9	12	1	0	rs144365306	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86133743	T	T	86133743	3	4	45	1	0	0	0	0	1	0	0	0	2883	643	23	4	2003	4	CCDC81	11	86133743	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	10071584	86133743	48872773	357	50177											
GRM5	2915	broad.mit.edu	37	chr11	88780384	88780384	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaggaaacttaccttcTgtgtgcacggctgatacata	9	9	1	1	rs76850190	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88780384	G	G	88780384	2	3	45	1	0	0	0	0	0	0	0	1	6866	1567	55	5		5	GRM5	11	88780384	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	2646641	88780384	46226132	358	50178											
MTNR1B	4544	broad.mit.edu	37	chr11	92714636	92714636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgttcttggtgagtctgGcattggctgacctggtggtg	15	6	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92714636	A	A	92714636	3	1	45	1	0	0	0	0	1	0	0	0	10046	1203	42	4	253	4	MTNR1B	11	92714636	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3934252	92714636	42291880	359	50179											
HEPHL1	341208	broad.mit.edu	37	chr11	93822102	93822102	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctaacaaaaactgggagttCgaaaagcagcacgtggacgc	11	10	0	0	rs116956001	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93822102	T	T	93822102	2	4	45	1	0	0	0	0	0	0	0	1	7122	883	31	4		4	HEPHL1	11	93822102	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1107466	93822102	41184414	360	50180											
CWC15	51503	broad.mit.edu	37	chr11	94704179	94704179	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcatcaaggttggcggcagGaatctggtctaaccgtggct	14	9	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94704179	A	A	94704179	3	1	45	1	0	0	0	0	1	0	0	0	4100	1174	41	4	409	4	CWC15	11	94704179	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	882077	94704179	40302337	361	50181											
CASP5	838	broad.mit.edu	37	chr11	104879560	104879560	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactggtcgacttttgatccGtattaggtactagggtctgg	12	8	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104879560	A	A	104879560	3	1	45	1	0	0	0	0	1	0	0	0	2700	1145	40	4	1181	4	CASP5	11	104879560	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	10175381	104879560	30126956	362	50182											
NPAT	4863	broad.mit.edu	37	chr11	108047778	108047778	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgattctgtctgttccaAtatgtcctgtatagcttctt	7	9	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108047778	G	G	108047778	2	3	45	1	0	0	0	0	0	0	0	1	10661	98	4	5		5	NPAT	11	108047778	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3168218	108047778	26958738	363	50183											
SIDT2	51092	broad.mit.edu	37	chr11	117052829	117052829	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcacagccccaggtaacatCtccctgttgattgctcgaga	9	13	1	2	rs139036118	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117052829	G	G	117052829	1	3	45	0	1	0	0	0	0	0	0	0	14416	928	32	4		4	SIDT2	11	117052829	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	9005051	117052829	17953687	364	50184											
CEP164	22897	broad.mit.edu	37	chr11	117232638	117232638	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggataccccaccctctgctCttcgtggatctcaaagcgtg	9	14	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117232638	A	A	117232638	3	1	45	1	0	0	0	0	1	0	0	0	3279	913	32	3	495	3	CEP164	11	117232638	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	179809	117232638	17773878	365	50185											
PHLDB1	23187	broad.mit.edu	37	chr11	118516232	118516232	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccactctatcctacacCacctgcctgcggggcgggag	11	16	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118516232	T	T	118516232	3	4	45	1	0	0	0	0	1	0	0	0	11946	594	21	4	3338	4	PHLDB1	11	118516232	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1283594	118516232	16490284	366	50186											
SLC37A4	2542	broad.mit.edu	37	chr11	118895962	118895962	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttgggaggggcactctcGttggctatgactccaaacag	13	9	1	1	rs61730035	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118895962	A	A	118895962	2	1	45	1	0	0	0	0	0	0	0	1	14714	1136	40	4		4	SLC37A4	11	118895962	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	379730	118895962	16110554	367	50187											
PDZD3	79849	broad.mit.edu	37	chr11	119059200	119059200	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtgtccaggatccagggGcagggctcctgtgtctccct	13	13	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119059200	A	A	119059200	2	1	45	1	0	0	0	0	0	0	0	1	11796	1190	42	4		4	PDZD3	11	119059200	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	163238	119059200	15947316	368	50188											
GRAMD1B	57476	broad.mit.edu	37	chr11	123480927	123480927	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtacaaggcgagccaggaGagtgaatgttacgtgataga	14	5	0	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123480927	A	A	123480927	2	1	45	1	0	0	0	0	0	0	0	1	6814	933	33	4		4	GRAMD1B	11	123480927	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4421727	123480927	11525589	369	50189											
GRAMD1B	57476	broad.mit.edu	37	chr11	123480977	123480977	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcacccacgacgtgccctAccatgactacttctacacaa	4	18	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123480977	T	T	123480977	3	4	45	1	0	0	0	0	1	0	0	0	6814	391	14	5	1471	5	GRAMD1B	11	123480977	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	50	123480977	11525539	370	50190											
OR4D5	219875	broad.mit.edu	37	chr11	123810376	123810376	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttgttctactggggctctCtcaggtttgggagcttcggt	13	8	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123810376	G	G	123810376	3	3	45	1	0	0	0	0	1	0	0	0	11151	913	32	4	55	4	OR4D5	11	123810376	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	329399	123810376	11196140	371	50191											
KIRREL3	84623	broad.mit.edu	37	chr11	126736485	126736486	+	Intron	INS	-	T	T													gtgaggacaagccactcctgINSttttcacgcccaaaggttgc					rs149141190	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126736486	T	T	126736485	6	5	45	0	1	1	1	0	0	0	0	0	8397	1392	48	0		0	KIRREL3	11	126736485	Intron	INS	-	TCGA-17-Z012-01A-01W-0746-08	2926109	126736485	8270031	372	50192											
ARHGAP32	9743	broad.mit.edu	37	chr11	128839217	128839217	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggctgcctaacccagggtCgctccatctctttggagagc	11	13	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128839217	T	T	128839217	3	4	45	1	0	0	0	0	1	0	0	0	883	884	31	4	418	4	ARHGAP32	11	128839217	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2102732	128839217	6167299	373	50193											
APLP2	334	broad.mit.edu	37	chr11	129980466	129980466	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacagatcacaaatgtgatgGaggcaaaccagcgggttagt	12	7	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129980466	T	T	129980466	4	4	45	1	0	0	0	0	0	1	0	0	781	1175	41	3	323	3	APLP2	11	129980466	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1141249	129980466	5026050	374	50194											
FOXM1	2305	broad.mit.edu	37	chr12	2968544	2968544	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttggggacctaagcccacTgtaggacttcttgggtcttg	14	9	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2968544	C	C	2968544	3	2	45	1	0	0	0	0	1	0	0	0	6078	1580	55	5	743	5	FOXM1	12	2968544	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08		2968544	130883351	375	50195											
KCNA1	3736	broad.mit.edu	37	chr12	5021039	5021039	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccccgagagctcggggccCgccagggtcatcgccatcgt	13	16	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021039	T	T	5021039	2	4	45	1	0	0	0	0	0	0	0	1	8071	639	23	4		4	KCNA1	12	5021039	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2052495	5021039	128830856	376	50196											
KCNA5	3741	broad.mit.edu	37	chr12	5153883	5153883	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctgcggaggccggtcaaCgtctccctggacgtgttcgc	14	15	2	0	rs12720444	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5153883	T	T	5153883	2	4	45	1	0	0	0	0	0	0	0	1	8076	535	19	4		4	KCNA5	12	5153883	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	132844	5153883	128698012	377	50197											
PZP	5858	broad.mit.edu	37	chr12	9317723	9317723	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacctttcctgttcaccctCattttccttacccggatgca	4	17	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9317723	T	T	9317723	1	4	45	0	1	0	0	0	0	0	0	0	12977	841	29	4		4	PZP	12	9317723	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4163840	9317723	124534172	378	50198											
C12orf60	144608	broad.mit.edu	37	chr12	14976375	14976375	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcaatcagatgtcaccaCatctgagagaaccagaagtc	9	10	3	5	rs149459242	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14976375	T	T	14976375	3	4	45	1	0	0	0	0	1	0	0	0	1716	478	17	4	508	4	C12orf60	12	14976375	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5658652	14976375	118875520	379	50199											
SLCO1B3	28234	broad.mit.edu	37	chr12	21032563	21032563	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctaaccttgacctatgaTgggtttgtatatattgctat	9	7	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21032563	G	G	21032563	3	3	45	1	0	0	0	0	1	0	0	0	14838	1461	51	5	1363	5	SLCO1B3	12	21032563	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	6056188	21032563	112819332	380	50200											
BCAT1	586	broad.mit.edu	37	chr12	24995032	24995032	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacctccatcttcatttatCcagtaaagaaaaagattcat	3	9	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24995032	T	T	24995032	4	4	45	1	0	0	0	0	0	1	0	0	1359	856	30	4	379	4	BCAT1	12	24995032	Nonsense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3962469	24995032	108856863	381	50201											
C12orf11	55726	broad.mit.edu	37	chr12	27081688	27081688	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatttccaacacgttctgCattctccatgagtagagtac	6	11	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27081688	T	T	27081688	3	4	45	1	0	0	0	0	1	0	0	0	1688	710	25	4	1725	4	C12orf11	12	27081688	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2086656	27081688	106770207	382	50202											
FAR2	55711	broad.mit.edu	37	chr12	29463953	29463953	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatattttatgttctttttcCtatgcagactgggaaagggt	9	5	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29463953	T	T	29463953	1	4	45	0	1	0	0	0	0	0	0	0	5732	696	24	4		4	FAR2	12	29463953	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2382265	29463953	104387942	383	50203											
TROAP	10024	broad.mit.edu	37	chr12	49723166	49723166	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcccttgctgacatctcaCttctgtgccaggcccagtgg	10	15	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49723166	T	T	49723166	1	4	45	0	1	0	0	0	0	0	0	0	16700	580	20	4		4	TROAP	12	49723166	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	20259213	49723166	84128729	384	50204											
HOXC4	3221	broad.mit.edu	37	chr12	54448008	54448008	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtcgctctgcgagccggCgcctctctcaggcgcctccg	12	18	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54448008	T	T	54448008	3	4	45	1	0	0	0	0	1	0	0	0	7380	768	27	4	304	4	HOXC4	12	54448008	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4724842	54448008	79403887	385	50205											
STAT2	6773	broad.mit.edu	37	chr12	56742722	56742722	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtaccgaacagcttgtttCtcagcatgctcagctggtct	9	12	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56742722	G	G	56742722	3	3	45	1	0	0	0	0	1	0	0	0	15383	913	32	4	1025	4	STAT2	12	56742722	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2294714	56742722	77109173	386	50206											
GLI1	2735	broad.mit.edu	37	chr12	57864766	57864766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttatggagcgaggggtcCaggctctctgcctcttgggc	15	12	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57864766	A	A	57864766	3	1	45	1	0	0	0	0	1	0	0	0	6501	594	21	2	2285	2	GLI1	12	57864766	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1122044	57864766	75987129	387	50207											
LLPH	84298	broad.mit.edu	37	chr12	66522855	66522855	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttttcagcacgcatctttCttttccacttactccgtaag	4	13	4	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66522855	A	A	66522855	3	1	45	1	0	0	0	0	1	0	0	0	8909	913	32	3	365	3	LLPH	12	66522855	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	8658089	66522855	67329040	388	50208											
IRAK3	11213	broad.mit.edu	37	chr12	66639014	66639014	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccggtgtgctgcaacgcGggcaaagttaagaccatcaa	13	10	1	1	rs140671957		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66639014	A	A	66639014	3	1	45	1	0	0	0	0	1	0	0	0	7894	1116	39	4	1328	4	IRAK3	12	66639014	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	116159	66639014	67212881	389	50209											
BEST3	144453	broad.mit.edu	37	chr12	70048924	70048924	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccaggaatcccggaagactCcacctttttagaaaggtatc	8	12	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70048924	T	T	70048924	4	4	45	1	0	0	0	0	0	1	0	0	1411	856	30	4	240	4	BEST3	12	70048924	Nonsense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3409910	70048924	63802971	390	50210											
PTPRB	5787	broad.mit.edu	37	chr12	70949014	70949014	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccagctgcagttgacaGtaaagttgatggaagacttg	12	6	0	4	rs61758735	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70949014	A	A	70949014	3	1	45	1	0	0	0	0	1	0	0	0	12904	1029	36	4	1638	4	PTPRB	12	70949014	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	900090	70949014	62902881	391	50211											
LGR5	8549	broad.mit.edu	37	chr12	71947005	71947005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcaagccatgaccttggCcctgaacaaaatacaccaca	6	13	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71947005	A	A	71947005	3	1	45	1	0	0	0	0	1	0	0	0	8829	739	26	3	599	3	LGR5	12	71947005	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	997991	71947005	61904890	392	50212											
SLC6A15	55117	broad.mit.edu	37	chr12	85279344	85279344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacaaaatagcacacctgCaaaataaaatgatatcccat	4	10	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85279344	A	A	85279344	1	1	45	0	1	0	0	0	0	0	0	0	14792	725	25	3		3	SLC6A15	12	85279344	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	13332339	85279344	48572551	393	50213											
LRRIQ1	84125	broad.mit.edu	37	chr12	85517881	85517881	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggatactgcagaaaatctCtgtcattattttaagaaatt	6	5	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85517881	T	T	85517881	2	4	45	1	0	0	0	0	0	0	0	1	9116	900	32	4		4	LRRIQ1	12	85517881	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	238537	85517881	48334014	394	50214											
MGAT4C	25834	broad.mit.edu	37	chr12	86373796	86373796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcaatgactttcttgatGgcagttaagaaattttttga	9	4	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86373796	T	T	86373796	2	4	45	1	0	0	0	0	0	0	0	1	9640	1335	47	2		2	MGAT4C	12	86373796	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	855915	86373796	47478099	395	50215											
DCN	1634	broad.mit.edu	37	chr12	91558500	91558500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactttgtccagacctagcAtaagagtaataggagtgtgc	11	8	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91558500	G	G	91558500	1	3	45	0	1	0	0	0	0	0	0	0	4330	232	8	5		5	DCN	12	91558500	Intron	SNP	A	TCGA-17-Z012-01A-01W-0746-08	5184704	91558500	42293395	396	50216											
PLXNC1	10154	broad.mit.edu	37	chr12	94613883	94613883	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggagctctgccagaataAaagtcagcccaaccggacct	10	13	2	1	rs114758530	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94613883	G	G	94613883	3	3	45	1	0	0	0	0	1	0	0	0	12221	14	1	5	1668	5	PLXNC1	12	94613883	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3055383	94613883	39238012	397	50217											
GIT2	9815	broad.mit.edu	37	chr12	110376292	110376292	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagggagagtggggcttggGgccacatggggttctgctgt	19	7	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110376292	A	A	110376292	2	1	45	1	0	0	0	0	0	0	0	1	6461	1219	43	4		4	GIT2	12	110376292	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	15762409	110376292	23475603	398	50218											
TAOK3	51347	broad.mit.edu	37	chr12	118627674	118627674	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagtggagggcctggctctGaactgactgggtaggccgcg	18	9	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118627674	A	A	118627674	4	1	45	1	0	0	0	0	0	1	0	0	15668	1299	45	4	1461	4	TAOK3	12	118627674	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	8251382	118627674	15224221	399	50219											
SIRT4	23409	broad.mit.edu	37	chr12	120750374	120750374	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggctcctgatggtgacGtctttctctcagaggagcaa	12	11	3	3	rs150394622	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120750374	A	A	120750374	3	1	45	1	0	0	0	0	1	0	0	0	14453	1145	40	4	619	4	SIRT4	12	120750374	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2122700	120750374	13101521	400	50220											
PIWIL1	9271	broad.mit.edu	37	chr12	130851740	130851740	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagattttttgctcagtctgGaggaagacttcagaatccac	9	9	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130851740	A	A	130851740	3	1	45	1	0	0	0	0	1	0	0	0	12052	1174	41	4	2328	4	PIWIL1	12	130851740	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	10101366	130851740	3000155	401	50221											
SFRS8	6433	broad.mit.edu	37	chr12	132199433	132199434	+	Missense_Mutation	DNP	CT	AC	AC													ctacaatgccgtggggttcaCttacggtagcgactattacg							TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	132199434	AC	AC	132199433	3	1	45	1	0	0	0	0	1	0	0	0	14296	565	20	3	465	3	SFRS8	12	132199433	Missense_Mutation	DNP	CT	TCGA-17-Z012-01A-01W-0746-08	1347693	132199433	1652462	402	50222											
PAN3	255967	broad.mit.edu	37	chr13	28830443	28830443	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggaatgtcgttgtctGctgggtcttcccctcttcat	9	12	5	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28830443	A	A	28830443	3	1	45	1	0	0	0	0	1	0	0	0	11509	1319	46	4	1041	4	PAN3	13	28830443	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08		28830443	86339435	403	50223											
C13orf26	122046	broad.mit.edu	37	chr13	31543068	31543068	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaaccaagagcacacaaaGaaacagaccacataccaaag	7	11	0	3	rs9533168	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31543068	T	T	31543068	3	4	45	1	0	0	0	0	1	0	0	0	1735	933	33	3	715	3	C13orf26	13	31543068	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2712625	31543068	83626810	404	50224											
HSPH1	10808	broad.mit.edu	37	chr13	31725284	31725284	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttccactaacttttcatcGaagttttttcctcctaagaa	4	10	1	1	rs146776431		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31725284	C	C	31725284	3	2	45	1	0	0	0	0	1	0	0	0	7501	1049	37	4	1916	4	HSPH1	13	31725284	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	182216	31725284	83444594	405	50225											
NBEA	26960	broad.mit.edu	37	chr13	35733361	35733361	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagaaagtgagaccgattAccctgtcagcacagatactc	8	13	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35733361	T	T	35733361	3	4	45	1	0	0	0	0	1	0	0	0	10281	391	14	5	3139	5	NBEA	13	35733361	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	4008077	35733361	79436517	406	50226											
DGKH	160851	broad.mit.edu	37	chr13	42761201	42761201	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggacgctatgtgaaactGtaaaggacttcgttgccaaa	10	7	0	1	rs151042099		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42761201	A	A	42761201	3	1	45	1	0	0	0	0	1	0	0	0	4510	1377	48	4	1609	4	DGKH	13	42761201	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7027840	42761201	72408677	407	50227											
PCDH17	27253	broad.mit.edu	37	chr13	58208879	58208879	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccgtcaagtgcaagcgcgaGaacaaggagatccgcactta	12	11	1	2	rs150039929	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58208879	T	T	58208879	3	4	45	1	0	0	0	0	1	0	0	0	11606	933	33	3	2201	3	PCDH17	13	58208879	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	15447678	58208879	56960999	408	50228											
MYCBP2	23077	broad.mit.edu	37	chr13	77732063	77732063	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaagtaagtaacttaaagTacatttaccttgcaagcctt	5	7	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77732063	C	C	77732063	1	2	45	0	1	0	0	0	0	0	0	0	10112	1653	57	5		5	MYCBP2	13	77732063	Intron	SNP	T	TCGA-17-Z012-01A-01W-0746-08	19523184	77732063	37437815	409	50229											
FARP1	10160	broad.mit.edu	37	chr13	99061646	99061646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtctgtgaactcgcagggggGagtggcccctgccaacgtga	16	11	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99061646	T	T	99061646	3	4	45	1	0	0	0	0	1	0	0	0	5733	1174	41	3	1742	3	FARP1	13	99061646	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	21329583	99061646	16108232	410	50230											
DAOA	267012	broad.mit.edu	37	chr13	106118626	106118626	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgccgatgatttagctgGgaggacccaaaatgctggaa	12	8	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106118626	T	T	106118626	1	4	45	0	1	0	0	0	0	0	0	0	4265	1247	43	2		2	DAOA	13	106118626	5'UTR	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7056980	106118626	9051252	411	50231											
PARP2	10038	broad.mit.edu	37	chr14	20820502	20820502	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggactatgccaccaataCtcaggtaactctcactatac	6	12	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20820502	G	G	20820502	3	3	45	1	0	0	0	0	1	0	0	0	11555	565	20	4	661	4	PARP2	14	20820502	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08		20820502	86529038	412	50232											
OSGEP	55644	broad.mit.edu	37	chr14	20916076	20916076	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatacaccccactcctccCacaatgagggcctcctggga	7	17	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20916076	A	A	20916076	2	1	45	1	0	0	0	0	0	0	0	1	11381	581	21	2		2	OSGEP	14	20916076	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	95574	20916076	86433464	413	50233											
CMA1	1215	broad.mit.edu	37	chr14	24975497	24975497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctccttcaactgtgaagGgaatgaaggactgtcagtcc	10	9	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24975497	T	T	24975497	1	4	45	0	1	0	0	0	0	0	0	0	3606	1247	43	2		2	CMA1	14	24975497	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4059421	24975497	82374043	414	50234											
HECTD1	25831	broad.mit.edu	37	chr14	31642585	31642585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacacatctttcatcaccCtgcaatgcactttcaattga	4	13	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31642585	A	A	31642585	3	1	45	1	0	0	0	0	1	0	0	0	7106	680	24	2	7051	2	HECTD1	14	31642585	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6667088	31642585	75706955	415	50235											
ARHGAP5	394	broad.mit.edu	37	chr14	32621650	32621650	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcccggataaaacagaacGtcttcatgccttgaaagaaa	7	9	2	3	rs148897080		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32621650	A	A	32621650	3	1	45	1	0	0	0	0	1	0	0	0	888	1145	40	4	4115	4	ARHGAP5	14	32621650	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	979065	32621650	74727890	416	50236											
KIAA0586	9786	broad.mit.edu	37	chr14	58955530	58955530	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcactgaaactgaaacttTagataaacccatctctgaag	6	9	2	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58955530	C	C	58955530	3	2	45	1	0	0	0	0	1	0	0	0	8256	1764	61	5	3581	5	KIAA0586	14	58955530	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	26333880	58955530	48394010	417	50237											
C14orf135	64430	broad.mit.edu	37	chr14	60574902	60574902	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctattcttctttggatggatGacactatgtatagcagaata	8	6	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60574902	A	A	60574902	1	1	45	0	1	0	0	0	0	0	0	0	1758	1305	45	4		4	C14orf135	14	60574902	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1619372	60574902	46774638	418	50238											
ZBTB25	7597	broad.mit.edu	37	chr14	64954703	64954703	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgttttggccctttcccCgtgtacataatgtgcaacaa	7	11	1	0	rs147617886	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64954703	T	T	64954703	2	4	45	1	0	0	0	0	0	0	0	1	17658	639	23	4		4	ZBTB25	14	64954703	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4379801	64954703	42394837	419	50239											
PCNX	22990	broad.mit.edu	37	chr14	71575490	71575490	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctactagtcagatatcGcttcgaaacttgccatcatc	5	12	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71575490	A	A	71575490	2	1	45	1	0	0	0	0	0	0	0	1	11685	1074	38	4		4	PCNX	14	71575490	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	6620787	71575490	35774050	420	50240											
TSHR	7253	broad.mit.edu	37	chr14	81610007	81610007	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggaccggaagatccgcctCaggcacgcatgtgccatcat	11	14	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81610007	A	A	81610007	2	1	45	1	0	0	0	0	0	0	0	1	16747	813	29	3		3	TSHR	14	81610007	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	10034517	81610007	25739533	421	50241											
PSMC1	5700	broad.mit.edu	37	chr14	90725526	90725526	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagtcagagtggtggtcAtggtcctggaggtggcaaga	16	6	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90725526	G	G	90725526	3	3	45	1	0	0	0	0	1	0	0	0	12791	217	8	5	32	5	PSMC1	14	90725526	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	9115519	90725526	16624014	422	50242											
DLK1	8788	broad.mit.edu	37	chr14	101200981	101200981	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaacccctctcctcacCgagggccaggccatctgctt	8	16	3	1	rs142868728	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200981	T	T	101200981	2	4	45	1	0	0	0	0	0	0	0	1	4604	639	23	4		4	DLK1	14	101200981	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	10475455	101200981	6148559	423	50243											
PPP2R5C	5527	broad.mit.edu	37	chr14	102276305	102276305	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatgtaataaagcgggcaGcaggatggtggtggatgcgg	18	5	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102276305	A	A	102276305	3	1	45	1	0	0	0	0	1	0	0	0	12495	971	34	4	299	4	PPP2R5C	14	102276305	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1075324	102276305	5073235	424	50244											
TRPM1	4308	broad.mit.edu	37	chr15	31330378	31330378	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccatgataacctacggaaCataaattgattttttaagct	5	9	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31330378	G	G	31330378	1	3	45	0	1	0	0	0	0	0	0	0	16710	493	17	4		4	TRPM1	15	31330378	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08		31330378	71201014	425	50245											
C15orf53	400359	broad.mit.edu	37	chr15	38988925	38988925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcatctgtctccaggcGtctgtttggatggctgtaag	13	9	3	0	rs146995135	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38988925	T	T	38988925	2	4	45	1	0	0	0	0	0	0	0	1	1814	1132	40	3		3	C15orf53	15	38988925	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7658547	38988925	63542467	426	50246											
EPB42	2038	broad.mit.edu	37	chr15	43512963	43512963	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaaacaggtgatgctgCgggggctgcatacagtccag	14	8	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43512963	G	G	43512963	1	3	45	0	1	0	0	0	0	0	0	0	5200	768	27	4		4	EPB42	15	43512963	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4524038	43512963	59018429	427	50247											
FBN1	2200	broad.mit.edu	37	chr15	48808375	48808375	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactagatgatttttgaattCttacttggtggctcccgaga	9	7	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48808375	G	G	48808375	1	3	45	0	1	0	0	0	0	0	0	0	5759	928	32	4		4	FBN1	15	48808375	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5295412	48808375	53723017	428	50248											
CEP152	22995	broad.mit.edu	37	chr15	49034266	49034266	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatttctgcagctcgttcCttactctcctgaatataacg	5	13	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49034266	T	T	49034266	2	4	45	1	0	0	0	0	0	0	0	1	3278	680	24	4		4	CEP152	15	49034266	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	225891	49034266	53497126	429	50249											
ZNF280D	54816	broad.mit.edu	37	chr15	56970977	56970977	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttcccagctctcactgctCtgcttctcaagttccaaatg	5	14	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56970977	G	G	56970977	3	3	45	1	0	0	0	0	1	0	0	0	17943	912	32	4	1940	4	ZNF280D	15	56970977	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7936711	56970977	45560415	430	50250											
RNF111	54778	broad.mit.edu	37	chr15	59377888	59377888	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgaagctggagtgactgcAgctacttatacacctggtgc	11	9	0	2	rs76979606	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59377888	G	G	59377888	2	3	45	1	0	0	0	0	0	0	0	1	13536	175	7	5		5	RNF111	15	59377888	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	2406911	59377888	43153504	431	50251											
CYP11A1	1583	broad.mit.edu	37	chr15	74635368	74635368	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacgttggccttgatgtcctCgaaggacatcttgctgtctc	11	11	2	1	rs6161	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74635368	T	T	74635368	3	4	45	1	0	0	0	0	1	0	0	0	4177	893	31	4	645	4	CYP11A1	15	74635368	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	15257480	74635368	27896024	432	50252											
DNAJA4	55466	broad.mit.edu	37	chr15	78572750	78572750	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcagcacagggaggcctAcgaggaggacgaagacgggc	18	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78572750	G	G	78572750	3	3	45	1	0	0	0	0	1	0	0	0	4654	391	14	5	1314	5	DNAJA4	15	78572750	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3937382	78572750	23958642	433	50253											
AKAP13	11214	broad.mit.edu	37	chr15	86278796	86278796	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctattttttgtttaggaggcGagaaggaagagggagatgat	15	2	0	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86278796	T	T	86278796	4	4	45	1	0	0	0	0	0	1	0	0	449	1059	37	3	7639	3	AKAP13	15	86278796	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	7706046	86278796	16252596	434	50254											
C15orf32	145858	broad.mit.edu	37	chr15	93015697	93015697	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattgttaacaccatctcagCtcaaaagccctgaaggccac	6	14	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93015697	G	G	93015697	3	3	45	1	0	0	0	0	1	0	0	0	1803	797	28	4	321	4	C15orf32	15	93015697	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6736901	93015697	9515695	435	50255											
OR1F1	4992	broad.mit.edu	37	chr16	3254810	3254810	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccctactgaaactctcCtgctcagacacacacctcaa	3	18	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3254810	T	T	3254810	2	4	45	1	0	0	0	0	0	0	0	1	11050	668	24	4		4	OR1F1	16	3254810	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08		3254810	87099943	436	50256											
ADCY9	115	broad.mit.edu	37	chr16	4016932	4016932	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgggccgccggaggtcaCgcggcaccgaactattgcac	15	14	1	0	rs141519764	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4016932	T	T	4016932	3	4	45	1	0	0	0	0	1	0	0	0	301	536	19	4	1159	4	ADCY9	16	4016932	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	762122	4016932	86337821	437	50257											
ACSM2A	123876	broad.mit.edu	37	chr16	20480912	20480912	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagatgtctaaggccaaggCtattgttgctggggatgaag	15	6	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20480912	G	G	20480912	3	3	45	1	0	0	0	0	1	0	0	0	183	797	28	4	477	4	ACSM2A	16	20480912	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	16463980	20480912	69873841	438	50258											
DNAH3	55567	broad.mit.edu	37	chr16	20970576	20970576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaggcatccagcttgcgGccaggtggcagttctgtaag	16	9	1	0	rs34121503	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20970576	T	T	20970576	3	4	45	1	0	0	0	0	1	0	0	0	4643	1203	42	3	1634	3	DNAH3	16	20970576	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	489664	20970576	69384177	439	50259											
HS3ST4	9951	broad.mit.edu	37	chr16	26147170	26147171	+	Missense_Mutation	DNP	CG	TT	TT													aaccggaccctcgggctgatCgatgcttcctggagtgccat							TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26147171	TT	TT	26147170	3	4	45	1	0	0	0	0	1	0	0	0	7434	874	31	4	978	4	HS3ST4	16	26147170	Missense_Mutation	DNP	CG	TCGA-17-Z012-01A-01W-0746-08	5176594	26147170	64207583	440	50260											
HIRIP3	8479	broad.mit.edu	37	chr16	30006859	30006859	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatctccaaccccctgggCacctgaggtccgggcggcct	11	19	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30006859	T	T	30006859	1	4	45	0	1	0	0	0	0	0	0	0	7188	725	25	4		4	HIRIP3	16	30006859	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3859689	30006859	60347894	441	50261											
ZNF267	10308	broad.mit.edu	37	chr16	31926648	31926648	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgtggcaaggtctttAaccttaactgtagtttatac	8	6	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31926648	C	C	31926648	3	2	45	1	0	0	0	0	1	0	0	0	17932	362	13	5	1092	5	ZNF267	16	31926648	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1919789	31926648	58428105	442	50262											
CCL17	6361	broad.mit.edu	37	chr16	57449785	57449785	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcttgaagcctcctcacCccagactcctgactgtctcc	7	17	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57449785	T	T	57449785	1	4	45	0	1	0	0	0	0	0	0	0	2916	638	22	4		4	CCL17	16	57449785	3'UTR	SNP	C	TCGA-17-Z012-01A-01W-0746-08	25523137	57449785	32904968	443	50263											
CNOT1	23019	broad.mit.edu	37	chr16	58568042	58568042	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagactaaggcaagaaaggAtttcagaccttgttcagcag	10	8	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58568042	G	G	58568042	1	3	45	0	1	0	0	0	0	0	0	0	3649	348	12	5		5	CNOT1	16	58568042	Intron	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1118257	58568042	31786711	444	50264											
PRMT7	54496	broad.mit.edu	37	chr16	68381128	68381128	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaggtgctgaagccagaCagcgtgtgcctgtgtgtcag	15	11	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68381128	G	G	68381128	3	3	45	1	0	0	0	0	1	0	0	0	12647	477	17	4	1244	4	PRMT7	16	68381128	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	9813086	68381128	21973625	445	50265											
FTSJD1	55783	broad.mit.edu	37	chr16	71319487	71319487	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggaacttacaccatgcttGagtacaaagttcagcattca	7	9	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71319487	A	A	71319487	4	1	45	1	0	0	0	0	0	1	0	0	6150	1299	45	4	1979	4	FTSJD1	16	71319487	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2938359	71319487	19035266	446	50266											
ZFHX3	463	broad.mit.edu	37	chr16	72827874	72827874	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcattgtcatattccttgcTataaaagctcggggccgggc	10	10	2	0	rs142939235	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72827874	C	C	72827874	3	2	45	1	0	0	0	0	1	0	0	0	17760	1522	53	5	2412	5	ZFHX3	16	72827874	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	1508387	72827874	17526879	447	50267											
ZFHX3	463	broad.mit.edu	37	chr16	72830425	72830425	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggctgaggcggcgctgcCggaagtgggggtggaggggg	25	8	0	1	rs148383343	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72830425	T	T	72830425	2	4	45	1	0	0	0	0	0	0	0	1	17760	639	23	4		4	ZFHX3	16	72830425	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2551	72830425	17524328	448	50268											
GLG1	2734	broad.mit.edu	37	chr16	74566055	74566055	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaatttcattttcaggctaGaagagaaaaaaaagaagaga	9	3	2	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74566055	C	C	74566055	1	2	45	0	1	0	0	0	0	0	0	0	6500	957	33	4		4	GLG1	16	74566055	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1735630	74566055	15788698	449	50269											
MBTPS1	8720	broad.mit.edu	37	chr16	84118642	84118642	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaagcaacactggtccctGagagggcccggcacccccct	12	16	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84118642	A	A	84118642	3	1	45	1	0	0	0	0	1	0	0	0	9454	1294	45	4	1982	4	MBTPS1	16	84118642	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9552587	84118642	6236111	450	50270											
MBTPS1	8720	broad.mit.edu	37	chr16	84132690	84132690	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagggaacgaaagacttttCgttggggcgtgacccgtttg	15	7	0	3	rs148577579	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84132690	T	T	84132690	3	4	45	1	0	0	0	0	1	0	0	0	9454	884	31	4	2853	4	MBTPS1	16	84132690	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	14048	84132690	6222063	451	50271											
HSDL1	83693	broad.mit.edu	37	chr16	84164008	84164008	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcttgctaactcttcagcGtaggcttttccaatcccatc	7	14	2	0	rs34611937	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84164008	A	A	84164008	2	1	45	1	0	0	0	0	0	0	0	1	7460	1140	40	4		4	HSDL1	16	84164008	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	31318	84164008	6190745	452	50272											
ABR	29	broad.mit.edu	37	chr17	970440	970440	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggatggaaacaccaggtcGgccagggggatgtaccactt	16	9	0	0	rs142914400	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	970440	A	A	970440	2	1	45	1	0	0	0	0	0	0	0	1	99	1103	39	4		4	ABR	17	970440	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08		970440	80224770	453	50273											
SGSM2	9905	broad.mit.edu	37	chr17	2246847	2246847	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtccgcaggtgaagcaAatcatggaggaggctgtcac	14	8	2	1	rs138672949	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2246847	G	G	2246847	2	3	45	1	0	0	0	0	0	0	0	1	14336	11	1	5		5	SGSM2	17	2246847	Silent	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1276407	2246847	78948363	454	50274											
TP53	7157	broad.mit.edu	37	chr17	7579356	7579356	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagaatgcaagaagcccaGacggaaaccgtagctgccct	10	14	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7579356	T	T	7579356	3	4	45	1	0	0	0	0	1	0	0	0	16505	933	33	3	971	3	TP53	17	7579356	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5332509	7579356	73615854	455	50275											
CHD3	1107	broad.mit.edu	37	chr17	7797875	7797875	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctaccacctcgtctgcctTgatcctgagcttgaccgggc	10	16	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7797875	G	G	7797875	2	3	45	1	0	0	0	0	0	0	0	1	3357	1799	63	5		5	CHD3	17	7797875	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	218519	7797875	73397335	456	50276											
GLP2R	9340	broad.mit.edu	37	chr17	9765330	9765330	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactgcctgcttctactgttGaccttaggtgctggacaaca	9	11	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9765330	A	A	9765330	1	1	45	0	1	0	0	0	0	0	0	0	6517	1305	45	4		4	GLP2R	17	9765330	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1967455	9765330	71429880	457	50277											
DNAH9	1770	broad.mit.edu	37	chr17	11795241	11795241	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtgtgataagctgaccTaccttgcccagctcaccttt	8	12	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11795241	A	A	11795241	3	1	45	1	0	0	0	0	1	0	0	0	4648	1522	53	5	11490	5	DNAH9	17	11795241	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	2029911	11795241	69399969	458	50278											
SLC47A1	55244	broad.mit.edu	37	chr17	19474875	19474875	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagctaaattggaaaaaagCctgtcagcaggtaactatgt	9	7	2	0	rs111653425	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19474875	T	T	19474875	3	4	45	1	0	0	0	0	1	0	0	0	14761	739	26	4	1452	4	SLC47A1	17	19474875	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7679634	19474875	61720335	459	50279											
NEK8	284086	broad.mit.edu	37	chr17	27062401	27062401	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgcggtgagtgtatgCaccctccaggggacaactga	15	10	0	2	rs11649957		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27062401	T	T	27062401	1	4	45	0	1	0	0	0	0	0	0	0	10425	725	25	4		4	NEK8	17	27062401	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	7587526	27062401	54132809	460	50280											
RHBDL3	162494	broad.mit.edu	37	chr17	30648080	30648080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttgggtggcgtggccgtGggcatcaccctgggcgtggt	18	11	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30648080	T	T	30648080	2	4	45	1	0	0	0	0	0	0	0	1	13432	1335	47	2		2	RHBDL3	17	30648080	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3585679	30648080	50547130	461	50281											
SLFN11	91607	broad.mit.edu	37	chr17	33690266	33690266	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaattaggtcagcaggatcCgagtttgggtcagcaggatc	13	7	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33690266	T	T	33690266	2	4	45	1	0	0	0	0	0	0	0	1	14847	639	23	4		4	SLFN11	17	33690266	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3042186	33690266	47504944	462	50282											
ERBB2	2064	broad.mit.edu	37	chr17	37868208	37868208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctttctacggacgtgggatCctgcaccctcgtctgccccc	9	18	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37868208	A	A	37868208	3	1	45	1	0	0	0	0	1	0	0	0	5248	855	30	3	959	3	ERBB2	17	37868208	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4177942	37868208	43327002	463	50283											
KRT10	3858	broad.mit.edu	37	chr17	38978823	38978823	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtagtgcttgcttgagctGtatcgaacagacatggtgat	13	6	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38978823	T	T	38978823	4	4	45	1	0	0	0	0	0	1	0	0	8519	1372	48	3	1771	3	KRT10	17	38978823	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1110615	38978823	42216387	464	50284											
COASY	80347	broad.mit.edu	37	chr17	40717048	40717048	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggaaggtcctaggcagcCgggtgtttgggaataaggta	16	6	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40717048	T	T	40717048	3	4	45	1	0	0	0	0	1	0	0	0	3684	643	23	4	1394	4	COASY	17	40717048	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1738225	40717048	40478162	465	50285											
PSMC3IP	29893	broad.mit.edu	37	chr17	40726186	40726186	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagggccacgattttgccatCtaggacttgaaggtcagcat	12	9	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40726186	G	G	40726186	3	3	45	1	0	0	0	0	1	0	0	0	12794	913	32	4	405	4	PSMC3IP	17	40726186	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	9138	40726186	40469024	466	50286											
MPP2	4355	broad.mit.edu	37	chr17	41958884	41958884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtccccggcgttgaagCgcaggcctgcttccttgcag	13	14	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41958884	A	A	41958884	3	1	45	1	0	0	0	0	1	0	0	0	9828	768	27	3	931	3	MPP2	17	41958884	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1232698	41958884	39236326	467	50287											
MTMR4	9110	broad.mit.edu	37	chr17	56573255	56573255	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggacaatgttcaggtggctCccctatgccatctaaagtcc	9	12	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56573255	A	A	56573255	4	1	45	1	0	0	0	0	0	1	0	0	10040	864	30	3	1355	3	MTMR4	17	56573255	Nonsense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	14614371	56573255	24621955	468	50288											
HEATR6	63897	broad.mit.edu	37	chr17	58120943	58120943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcactgatttgttaaccctGggagtgccccttgtgatcca	9	11	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58120943	A	A	58120943	3	1	45	1	0	0	0	0	1	0	0	0	7100	1348	47	4	22	4	HEATR6	17	58120943	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1547688	58120943	23074267	469	50289											
APOH	350	broad.mit.edu	37	chr17	64219811	64219811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcaccttgcccacagaCttacgagcacagacaggaag	9	13	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64219811	A	A	64219811	1	1	45	0	1	0	0	0	0	0	0	0	806	580	20	3		3	APOH	17	64219811	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	6098868	64219811	16975399	470	50290											
ABCA8	10351	broad.mit.edu	37	chr17	66871443	66871443	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagcctcaggatctctGcatggaggggctccacttgt	13	10	2	0	rs148489022	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66871443	A	A	66871443	3	1	45	1	0	0	0	0	1	0	0	0	38	1319	46	4	292	4	ABCA8	17	66871443	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2651632	66871443	14323767	471	50291											
ABCA9	10350	broad.mit.edu	37	chr17	67004355	67004355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtagaggcctgaaatccGtagctgggaatgagcttttt	14	6	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67004355	A	A	67004355	3	1	45	1	0	0	0	0	1	0	0	0	39	1144	40	4	1769	4	ABCA9	17	67004355	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	132912	67004355	14190855	472	50292											
CD300E	342510	broad.mit.edu	37	chr17	72613315	72613315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgaccatgaatccaggacCcacactgtctgaattttgca	8	12	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72613315	A	A	72613315	3	1	45	1	0	0	0	0	1	0	0	0	3028	624	22	2	299	2	CD300E	17	72613315	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	5608960	72613315	8581895	473	50293											
CD300LF	146722	broad.mit.edu	37	chr17	72700795	72700795	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcctgctctgacccactGgttttaacaaggatcttgca	7	13	2	1	rs144991054		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72700795	A	A	72700795	2	1	45	1	0	0	0	0	0	0	0	1	3031	1335	47	4		4	CD300LF	17	72700795	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	87480	72700795	8494415	474	50294											
DNAH17	8632	broad.mit.edu	37	chr17	76424765	76424765	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggactctcagggggcaggttCtcatcgatgtattcgtggta	14	8	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76424765	T	T	76424765	2	4	45	1	0	0	0	0	0	0	0	1	4641	912	32	4		4	DNAH17	17	76424765	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3723970	76424765	4770445	475	50295											
RNF213	57674	broad.mit.edu	37	chr17	78318746	78318746	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccagcatttcctgtttcActgcggggtaataaacccat	7	13	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78318746	T	T	78318746	3	4	45	1	0	0	0	0	1	0	0	0	13588	159	6	5	7040	5	RNF213	17	78318746	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1893981	78318746	2876464	476	50296											
RNF213	57674	broad.mit.edu	37	chr17	78319311	78319311	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaccgaccccgacaaaacGtatgagctcacaaccgacaa	7	16	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78319311	A	A	78319311	2	1	45	1	0	0	0	0	0	0	0	1	13588	1132	40	4		4	RNF213	17	78319311	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	565	78319311	2875899	477	50297											
LAMA1	284217	broad.mit.edu	37	chr18	7014035	7014035	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgatgagtcgaccccacgaGactgcaattgcaggcctgag	12	11	0	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7014035	C	C	7014035	3	2	45	1	0	0	0	0	1	0	0	0	8677	942	33	4	6249	4	LAMA1	18	7014035	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08		7014035	71063213	478	50298											
LAMA1	284217	broad.mit.edu	37	chr18	7015759	7015759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcgtagccccagtgcccatCctcacattcttcacacttca	4	17	4	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7015759	A	A	7015759	3	1	45	1	0	0	0	0	1	0	0	0	8677	855	30	3	6307	3	LAMA1	18	7015759	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1724	7015759	71061489	479	50299											
CDH2	1000	broad.mit.edu	37	chr18	25532324	25532324	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcagccgctttaaggccCtgcaatttggaaacacaaag	9	10	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25532324	A	A	25532324	1	1	45	0	1	0	0	0	0	0	0	0	3135	695	24	2		2	CDH2	18	25532324	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	18516565	25532324	52544924	480	50300											
DSG3	1830	broad.mit.edu	37	chr18	29056118	29056118	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgatagtgacagaaagggtGatctgtcccatttccagtgt	12	7	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29056118	A	A	29056118	2	1	45	1	0	0	0	0	0	0	0	1	4818	1277	45	4		4	DSG3	18	29056118	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3523794	29056118	49021130	481	50301											
CELF4	56853	broad.mit.edu	37	chr18	34855147	34855147	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaaggcctcgaaaaggcGgcgcacgtcgtcctcggact	12	15	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34855147	A	A	34855147	3	1	45	1	0	0	0	0	1	0	0	0	3248	1116	39	4	988	4	CELF4	18	34855147	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5799029	34855147	43222101	482	50302											
RIT2	6014	broad.mit.edu	37	chr18	40503653	40503653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcctgaaatgattgacGgtcagtgacggagtagcaga	13	8	1	5			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40503653	T	T	40503653	3	4	45	1	0	0	0	0	1	0	0	0	13498	1116	39	1	351	1	RIT2	18	40503653	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5648506	40503653	37573595	483	50303											
KIAA1632	57724	broad.mit.edu	37	chr18	43440212	43440212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtccggatactgcccCgaaggaactctgctgttgga	12	12	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43440212	A	A	43440212	3	1	45	1	0	0	0	0	1	0	0	0	8319	652	23	1	893	1	KIAA1632	18	43440212	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2936559	43440212	34637036	484	50304											
KIAA1632	57724	broad.mit.edu	37	chr18	43496539	43496539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaggaacaagaggagatgcGataaaaacctgccaagcaca	11	8	0	2	rs78339727	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43496539	A	A	43496539	3	1	45	1	0	0	0	0	1	0	0	0	8319	1059	37	4	4599	4	KIAA1632	18	43496539	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	56327	43496539	34580709	485	50305											
DYM	54808	broad.mit.edu	37	chr18	46860094	46860094	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatacttaaagtagaaacAtaccatggacctcgcatcaa	6	10	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46860094	C	C	46860094	1	2	45	0	1	0	0	0	0	0	0	0	4880	232	8	5		5	DYM	18	46860094	Intron	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3363555	46860094	31217154	486	50306											
NEDD4L	23327	broad.mit.edu	37	chr18	55992224	55992224	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtccctttaactttattccGcagcatggatgggaagttgt	10	9	0	0	rs78005374	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55992224	C	C	55992224	1	2	45	0	1	0	0	0	0	0	0	0	10406	1102	38	4		4	NEDD4L	18	55992224	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9132130	55992224	22085024	487	50307											
ALPK2	115701	broad.mit.edu	37	chr18	56184260	56184260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagacaggcatgaggccGtgcatcactgtgctgcggaa	14	9	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56184260	T	T	56184260	3	4	45	1	0	0	0	0	1	0	0	0	545	1136	40	3	712	3	ALPK2	18	56184260	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	192036	56184260	21892988	488	50308											
CCBE1	147372	broad.mit.edu	37	chr18	57106955	57106955	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggacagatcaggagatGgtcccatgggtcccattgag	15	8	1	3	rs147681552		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57106955	A	A	57106955	3	1	45	1	0	0	0	0	1	0	0	0	2757	1348	47	4	367	4	CCBE1	18	57106955	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	922695	57106955	20970293	489	50309											
SERPINB4	6318	broad.mit.edu	37	chr18	61310821	61310821	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgaattcatggtgaactcGatgtgatctggaactcctgg	12	7	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61310821	A	A	61310821	1	1	45	0	1	0	0	0	0	0	0	0	14216	1073	37	4		4	SERPINB4	18	61310821	5'UTR	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4203866	61310821	16766427	490	50310											
CREB3L3	84699	broad.mit.edu	37	chr19	4157105	4157105	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgatagtggcatctcCgaagacctcccctccgaccc	10	16	1	2	rs143021454	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4157105	G	G	4157105	2	3	45	1	0	0	0	0	0	0	0	1	3890	639	23	4		4	CREB3L3	19	4157105	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08		4157105	54971878	491	50311											
PLIN4	729359	broad.mit.edu	37	chr19	4512578	4512578	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgcagacagtgtccttgGtaccagttagaacgatcttg	10	10	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4512578	C	C	4512578	3	2	45	1	0	0	0	0	1	0	0	0	12187	1261	44	4	2737	4	PLIN4	19	4512578	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	355473	4512578	54616405	492	50312											
MUC16	94025	broad.mit.edu	37	chr19	9019331	9019331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaggtccactgtggagGtcccaggagctgagaaaaag	13	9	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9019331	T	T	9019331	3	4	45	1	0	0	0	0	1	0	0	0	10067	1261	44	3	6215	3	MUC16	19	9019331	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4506753	9019331	50109652	493	50313											
MUC16	94025	broad.mit.edu	37	chr19	9061146	9061146	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattctagtgatggtttccGtggagatttctggtgatatt	11	4	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9061146	T	T	9061146	3	4	45	1	0	0	0	0	1	0	0	0	10067	1145	40	3	17551	3	MUC16	19	9061146	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	41815	9061146	50067837	494	50314											
MUC16	94025	broad.mit.edu	37	chr19	9061229	9061229	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcttctgttctggagacCttagtagtagcaccagtggg	14	8	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9061229	T	T	9061229	2	4	45	1	0	0	0	0	0	0	0	1	10067	680	24	4		4	MUC16	19	9061229	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	83	9061229	50067754	495	50315											
MUC16	94025	broad.mit.edu	37	chr19	9061841	9061841	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctactcataagagtggtcatCtctgagtgtgaaaatcctgg	10	8	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9061841	G	G	9061841	3	3	45	1	0	0	0	0	1	0	0	0	10067	912	32	4	18246	4	MUC16	19	9061841	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	612	9061841	50067142	496	50316											
MUC16	94025	broad.mit.edu	37	chr19	9067106	9067106	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctcagggtccttgttcatGacagtggtcatttctgagtg	11	8	4	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9067106	T	T	9067106	2	4	45	1	0	0	0	0	0	0	0	1	10067	1277	45	3		3	MUC16	19	9067106	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5265	9067106	50061877	497	50317											
DNMT1	1786	broad.mit.edu	37	chr19	10277266	10277266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcagaaacaaataacccGcctttactttctcgtctcca	4	13	3	1	rs117294281	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10277266	A	A	10277266	1	1	45	0	1	0	0	0	0	0	0	0	4715	1102	38	4		4	DNMT1	19	10277266	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1210160	10277266	48851717	498	50318											
SLC44A2	57153	broad.mit.edu	37	chr19	10748382	10748382	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatgctgcttctggtgcctgGagaagttcatcaaattcctt	9	9	3	1	rs142741358	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10748382	C	C	10748382	3	2	45	1	0	0	0	0	1	0	0	0	14750	1175	41	4	1755	4	SLC44A2	19	10748382	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	471116	10748382	48380601	499	50319											
ZNF136	7695	broad.mit.edu	37	chr19	12297520	12297520	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcattgtatatggagaAgtcagcatgggtcagtcatc	12	6	3	1	rs142957711	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12297520	C	C	12297520	3	2	45	1	0	0	0	0	1	0	0	0	17852	69	3	5	341	5	ZNF136	19	12297520	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1549138	12297520	46831463	500	50320											
ZNF709	163051	broad.mit.edu	37	chr19	12575953	12575953	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaaagtttggtaatatctGaaagcttttccacattgttt	7	5	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12575953	A	A	12575953	2	1	45	1	0	0	0	0	0	0	0	1	18241	1281	45	4		4	ZNF709	19	12575953	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	278433	12575953	46553030	501	50321											
USHBP1	83878	broad.mit.edu	37	chr19	17367497	17367497	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggaaagccacttcctgtGgggtgggcttatccacactg	13	11	0	0	rs112158497		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17367497	C	C	17367497	3	2	45	1	0	0	0	0	1	0	0	0	17163	1348	47	4	878	4	USHBP1	19	17367497	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4791544	17367497	41761486	502	50322											
ZNF257	113835	broad.mit.edu	37	chr19	22271442	22271442	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgcaaagcctttaagtggtCctcagctcttactaccctta	6	12	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22271442	G	G	22271442	3	3	45	1	0	0	0	0	1	0	0	0	17926	855	30	4	904	4	ZNF257	19	22271442	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4903945	22271442	36857541	503	50323											
ZNF91	7644	broad.mit.edu	37	chr19	23545307	23545307	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatagaagactttcaaataTttcccacattgaaatacttt	3	7	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23545307	C	C	23545307	2	2	45	1	0	0	0	0	0	0	0	1	18329	1490	52	5		5	ZNF91	19	23545307	Silent	SNP	T	TCGA-17-Z012-01A-01W-0746-08	1273865	23545307	35583676	504	50324											
C19orf2	8725	broad.mit.edu	37	chr19	30503188	30503188	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatatgtgttttgaatatcAcagagcctttgttgatgttg	10	5	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30503188	T	T	30503188	1	4	45	0	1	0	0	0	0	0	0	0	1930	174	6	5		5	C19orf2	19	30503188	Intron	SNP	A	TCGA-17-Z012-01A-01W-0746-08	6957881	30503188	28625795	505	50325											
TSHZ3	57616	broad.mit.edu	37	chr19	31768675	31768675	+	Missense_Mutation	SNP	C	T	T													tcccatccttgcacccatccCgcggggggctggggctgttc							TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768675	T	T	31768675	3	4	45	1	0	0	0	0	1	0	0	0	16750	652	23	4	1225	4	TSHZ3	19	31768675	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1265487	31768675	27360308	506	50326	244	2									
TSHZ3	57616	broad.mit.edu	37	chr19	31768683	31768683	+	Missense_Mutation	SNP	G	C	C													ttgcacccatcccgcgggggGctggggctgttctcctggct							TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31768683	C	C	31768683	3	2	45	1	0	0	0	0	1	0	0	0	16750	1194	42	4	1233	4	TSHZ3	19	31768683	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	8	31768683	27360300	507	50327	244	2									
KIAA0355	9710	broad.mit.edu	37	chr19	34843565	34843565	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcaggataacaaaaccaAaacgtggccacccaaagcac	6	13	1	0	rs142397202		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34843565	G	G	34843565	3	3	45	1	0	0	0	0	1	0	0	0	8240	14	1	5	2968	5	KIAA0355	19	34843565	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	3074882	34843565	24285418	508	50328											
HAUS5	23354	broad.mit.edu	37	chr19	36110349	36110349	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacccaggaacaggtccgCctgctcatcaagggaaactc	11	13	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36110349	T	T	36110349	2	4	45	1	0	0	0	0	0	0	0	1	7035	726	26	4		4	HAUS5	19	36110349	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1266784	36110349	23018634	509	50329											
ARHGAP33	115703	broad.mit.edu	37	chr19	36273336	36273336	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcattcctgcaggacatcCacagcgtgtcctccctctgc	8	17	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36273336	T	T	36273336	3	4	45	1	0	0	0	0	1	0	0	0	884	594	21	4	1197	4	ARHGAP33	19	36273336	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	162987	36273336	22855647	510	50330											
CLIP3	25999	broad.mit.edu	37	chr19	36508569	36508569	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggctcacctctgaatacggGatgctggtgcgaagacccca	13	12	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36508569	C	C	36508569	3	2	45	1	0	0	0	0	1	0	0	0	3566	1174	41	4	220	4	CLIP3	19	36508569	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	235233	36508569	22620414	511	50331											
ZNF585A	199704	broad.mit.edu	37	chr19	37644311	37644311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgtacaaaagccttccCacattcaatgcatacataga	4	12	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37644311	A	A	37644311	3	1	45	1	0	0	0	0	1	0	0	0	18144	594	21	2	1823	2	ZNF585A	19	37644311	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1135742	37644311	21484672	512	50332											
ZNF585B	92285	broad.mit.edu	37	chr19	37677490	37677490	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactcttgtgtgaacacgttGatgtacctgaagttgtgact	10	8	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37677490	A	A	37677490	4	1	45	1	0	0	0	0	0	1	0	0	18145	1299	45	4	1364	4	ZNF585B	19	37677490	Nonsense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	33179	37677490	21451493	513	50333											
ZNF780A	284323	broad.mit.edu	37	chr19	40581044	40581044	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattggaatgaattttctgAtgctgaataaggtgtgcacc	10	6	2	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40581044	T	T	40581044	3	4	45	1	0	0	0	0	1	0	0	0	18281	330	12	5	751	5	ZNF780A	19	40581044	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	2903554	40581044	18547939	514	50334											
CYP2A6	1548	broad.mit.edu	37	chr19	41352810	41352810	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggatgagaaaggagtcaatGaagtcccgtggggaattggg	17	5	1	2	rs147901382	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41352810	T	T	41352810	3	4	45	1	0	0	0	0	1	0	0	0	4195	1281	45	3	703	3	CYP2A6	19	41352810	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	771766	41352810	17776173	515	50335											
ATP1A3	478	broad.mit.edu	37	chr19	42492085	42492085	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagggcagggtccaggcactCacgttgtcaccagaggggtc	15	12	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42492085	T	T	42492085	1	4	45	0	1	0	0	0	0	0	0	0	1134	841	29	4		4	ATP1A3	19	42492085	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1139275	42492085	16636898	516	50336											
CIC	23152	broad.mit.edu	37	chr19	42798319	42798319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgagtctgcttctgtttGgccagacctggattcagcac	10	12	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42798319	T	T	42798319	1	4	45	0	1	0	0	0	0	0	0	0	3455	1363	47	2		2	CIC	19	42798319	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	306234	42798319	16330664	517	50337											
PSG5	5673	broad.mit.edu	37	chr19	43690508	43690508	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcacctgtgagcaggagcCccttccaggtgatgtgctgt	12	13	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43690508	T	T	43690508	3	4	45	1	0	0	0	0	1	0	0	0	12764	623	22	4	977	4	PSG5	19	43690508	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	892189	43690508	15438475	518	50338											
PSG4	5672	broad.mit.edu	37	chr19	43702144	43702144	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagaggaacagaggataCtcacggaggagattcagggt	14	7	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43702144	T	T	43702144	1	4	45	0	1	0	0	0	0	0	0	0	12763	580	20	4		4	PSG4	19	43702144	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	11636	43702144	15426839	519	50339											
ZNF155	7711	broad.mit.edu	37	chr19	44501276	44501276	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcccatcagagatcccacAgtggtgaaaagccatataaa	7	11	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44501276	C	C	44501276	3	2	45	1	0	0	0	0	1	0	0	0	17862	188	7	5	1281	5	ZNF155	19	44501276	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	799132	44501276	14627707	520	50340											
TRAPPC6A	79090	broad.mit.edu	37	chr19	45668167	45668167	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacaccgccacccacaggtCtttgcacaagaacttgagga	9	13	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45668167	G	G	45668167	3	3	45	1	0	0	0	0	1	0	0	0	16587	913	32	4	281	4	TRAPPC6A	19	45668167	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1166891	45668167	13460816	521	50341											
FGF21	26291	broad.mit.edu	37	chr19	49261199	49261199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccctagctccactttgacCctgaggcctgcagcttccgg	9	17	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49261199	T	T	49261199	3	4	45	1	0	0	0	0	1	0	0	0	5907	623	22	4	362	4	FGF21	19	49261199	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3593032	49261199	9867784	522	50342											
GYS1	2997	broad.mit.edu	37	chr19	49486081	49486081	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcacattcagcccattGggggtcacaatatctgggat	9	10	5	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49486081	A	A	49486081	2	1	45	1	0	0	0	0	0	0	0	1	6977	1335	47	4		4	GYS1	19	49486081	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	224882	49486081	9642902	523	50343											
TSKS	60385	broad.mit.edu	37	chr19	50265430	50265430	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgacacgttggtgcaggccGaggaccgtttgaggttcagg	17	8	1	2	rs148077032	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50265430	A	A	50265430	3	1	45	1	0	0	0	0	1	0	0	0	16751	1059	37	4	1588	4	TSKS	19	50265430	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	779349	50265430	8863553	524	50344											
KLK15	55554	broad.mit.edu	37	chr19	51330971	51330971	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggagatgagggaagcGccacagttaaagcgtccacg	16	8	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51330971	T	T	51330971	2	4	45	1	0	0	0	0	0	0	0	1	8474	1074	38	3		3	KLK15	19	51330971	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1065541	51330971	7798012	525	50345											
ZNF578	147660	broad.mit.edu	37	chr19	53005109	53005109	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagactcatgttacatgAggaagcagctcagaagagga	11	7	2	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53005109	T	T	53005109	3	4	45	1	0	0	0	0	1	0	0	0	18137	304	11	5	13	5	ZNF578	19	53005109	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	1674138	53005109	6123874	526	50346											
ZNF665	79788	broad.mit.edu	37	chr19	53668524	53668524	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagtgaaaaccttgacgcAttcattacatttgaaaggct	8	8	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53668524	G	G	53668524	3	3	45	1	0	0	0	0	1	0	0	0	18200	217	8	5	821	5	ZNF665	19	53668524	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	663415	53668524	5460459	527	50347											
VN1R4	317703	broad.mit.edu	37	chr19	53770098	53770098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagttgggaaacatacaCtcattaaggctgaagtgttc	11	6	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53770098	A	A	53770098	3	1	45	1	0	0	0	0	1	0	0	0	17307	565	20	3	87	3	VN1R4	19	53770098	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	101574	53770098	5358885	528	50348											
CACNG7	59284	broad.mit.edu	37	chr19	54444851	54444851	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttttgccttcgccgcttcCtccttcctactcaaagaggt	6	15	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54444851	T	T	54444851	2	4	45	1	0	0	0	0	0	0	0	1	2588	668	24	4		4	CACNG7	19	54444851	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	674753	54444851	4684132	529	50349											
LILRA3	11026	broad.mit.edu	37	chr19	54802136	54802136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaaggaaagtgtgcatcCctccctgtgactgacacagc	9	12	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54802136	A	A	54802136	3	1	45	1	0	0	0	0	1	0	0	0	8858	623	22	2	275	2	LILRA3	19	54802136	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	357285	54802136	4326847	530	50350											
LAIR1	3903	broad.mit.edu	37	chr19	54868141	54868141	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggaggcagaagaggaccAggaggaggagacagaagagg	20	4	0	5			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54868141	T	T	54868141	3	4	45	1	0	0	0	0	1	0	0	0	8674	188	7	5	341	5	LAIR1	19	54868141	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	66005	54868141	4260842	531	50351											
ZNF460	10794	broad.mit.edu	37	chr19	57802180	57802180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaagatactcctatttgGggcaggccatggatcaagat	10	10	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57802180	T	T	57802180	3	4	45	1	0	0	0	0	1	0	0	0	18051	1232	43	2	281	2	ZNF460	19	57802180	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2934039	57802180	1326803	532	50352											
TGM3	7053	broad.mit.edu	37	chr20	2320589	2320589	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggtgagggactgcgtgctGatggtggagggaagcggcct	20	8	0	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2320589	T	T	2320589	2	4	45	1	0	0	0	0	0	0	0	1	15954	1277	45	3		3	TGM3	20	2320589	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08		2320589	60704931	533	50353											
PLCB1	23236	broad.mit.edu	37	chr20	8528207	8528208	+	Intron	DEL	TA	-	-													tgcccatatctaacccgttcTatgttctgaaatagtacttc					rs11467327		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8528208	-	-	8528207	6	5	45	0	1	1	0	1	0	0	0	0	12122	1537	53	0		0	PLCB1	20	8528207	Intron	DEL	TA	TCGA-17-Z012-01A-01W-0746-08	6207618	8528207	54497313	534	50354											
SPTLC3	55304	broad.mit.edu	37	chr20	13098266	13098266	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtgggcccaaccggccGgggtgtcacggagttctttg	17	12	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13098266	A	A	13098266	3	1	45	1	0	0	0	0	1	0	0	0	15243	1116	39	4	1076	4	SPTLC3	20	13098266	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4570059	13098266	49927254	535	50355											
BANF2	140836	broad.mit.edu	37	chr20	17705803	17705803	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggtatcaataaggtaattCatattttcttacttctctga	5	6	4	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17705803	T	T	17705803	1	4	45	0	1	0	0	0	0	0	0	0	1313	841	29	4		4	BANF2	20	17705803	Intron	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4607537	17705803	45319717	536	50356											
ZNF133	7692	broad.mit.edu	37	chr20	18296557	18296557	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacttggaggagaagaccatCgtgtgcagtgactgtggcct	14	9	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18296557	T	T	18296557	2	4	45	1	0	0	0	0	0	0	0	1	17849	874	31	4		4	ZNF133	20	18296557	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	590754	18296557	44728963	537	50357											
CD93	22918	broad.mit.edu	37	chr20	23065996	23065996	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaggaaggagccatccccCccttcaaagcagtcctggtg	11	14	1	1	rs140700593	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23065996	G	G	23065996	2	3	45	1	0	0	0	0	0	0	0	1	3077	610	22	4		4	CD93	20	23065996	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	4769439	23065996	39959524	538	50358											
CEP250	11190	broad.mit.edu	37	chr20	34091163	34091163	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgactcaggatctcgagaggAgagaccaggagctgatgctg	15	8	2	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34091163	T	T	34091163	4	4	45	1	0	0	0	0	0	1	0	0	3282	296	11	5	5072	5	CEP250	20	34091163	Nonsense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	11025167	34091163	28934357	539	50359											
EPB41L1	2036	broad.mit.edu	37	chr20	34783252	34783252	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctaccacatcccactagcCggagcaggaaaccacgccga	8	17	0	0	rs147654123	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34783252	T	T	34783252	3	4	45	1	0	0	0	0	1	0	0	0	5194	666	23	4	1497	4	EPB41L1	20	34783252	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	692089	34783252	28242268	540	50360											
DLGAP4	22839	broad.mit.edu	37	chr20	35061024	35061024	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactctgaccctcagccacGcccacgaggtctgccagaag	9	18	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35061024	A	A	35061024	3	1	45	1	0	0	0	0	1	0	0	0	4602	1087	38	4	906	4	DLGAP4	20	35061024	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	277772	35061024	27964496	541	50361											
LBP	3929	broad.mit.edu	37	chr20	36997785	36997785	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccagctccagcaaggaGcctgtcttccggctcagtgt	11	15	2	0	rs150948020	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36997785	A	A	36997785	2	1	45	1	0	0	0	0	0	0	0	1	8723	962	34	4		4	LBP	20	36997785	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1936761	36997785	26027735	542	50362											
FAM65C	140876	broad.mit.edu	37	chr20	49212036	49212036	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgataaattaggggaggcCagtttctgggaagcagccca	13	8	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49212036	T	T	49212036	2	4	45	1	0	0	0	0	0	0	0	1	5652	581	21	4		4	FAM65C	20	49212036	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	12214251	49212036	13813484	543	50363											
ATP9A	10079	broad.mit.edu	37	chr20	50273602	50273602	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcagagcgcgatggcctTcacggcttcgtgcacgcggc	16	13	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50273602	A	A	50273602	4	1	45	1	0	0	0	0	0	1	0	0	1202	1792	62	5	1822	5	ATP9A	20	50273602	Nonsense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	1061566	50273602	12751918	544	50364											
CTSZ	1522	broad.mit.edu	37	chr20	57572776	57572776	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcactctttgaattcatTgcatgtcccacattggttaa	8	9	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57572776	C	C	57572776	3	2	45	1	0	0	0	0	1	0	0	0	4077	1812	63	5	403	5	CTSZ	20	57572776	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	7299174	57572776	5452744	545	50365											
TMPRSS15	5651	broad.mit.edu	37	chr21	19687506	19687506	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcacagtgcagatgaccGtcacagagattcaccagtgg	10	12	3	3	rs148711749	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19687506	A	A	19687506	2	1	45	1	0	0	0	0	0	0	0	1	16369	1136	40	4		4	TMPRSS15	21	19687506	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08		19687506	28442389	546	50366											
TRPM2	7226	broad.mit.edu	37	chr21	45860714	45860714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgaggaacacggacaatGcctggatcgagacggtggcc	14	12	0	1	rs45578242	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45860714	T	T	45860714	3	4	45	1	0	0	0	0	1	0	0	0	16711	1319	46	3	4434	3	TRPM2	21	45860714	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	26173208	45860714	2269181	547	50367											
PCNT	5116	broad.mit.edu	37	chr21	47831327	47831327	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctgctctgctcccaggcCgggggccctcgtgggcaggc	17	15	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47831327	T	T	47831327	2	4	45	1	0	0	0	0	0	0	0	1	11684	639	23	4		4	PCNT	21	47831327	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1970613	47831327	298568	548	50368											
XKR3	150165	broad.mit.edu	37	chr22	17280787	17280787	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttctgctgcatgaaattatCccggattgagaatgcaatct	8	9	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17280787	G	G	17280787	3	3	45	1	0	0	0	0	1	0	0	0	17559	855	30	4	924	4	XKR3	22	17280787	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08		17280787	34023779	549	50369											
CLTCL1	8218	broad.mit.edu	37	chr22	19207455	19207455	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacgtgagcccagagctccGgatcctttctgcataccagg	12	13	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19207455	C	C	19207455	3	2	45	1	0	0	0	0	1	0	0	0	3599	1116	39	4	2124	4	CLTCL1	22	19207455	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1926668	19207455	32097111	550	50370											
TBX1	6899	broad.mit.edu	37	chr22	19751721	19751721	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggctggtggcggggaaggccGaccctgccacgccaggccgc	18	15	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19751721	C	C	19751721	3	2	45	1	0	0	0	0	1	0	0	0	15772	1058	37	4	570	4	TBX1	22	19751721	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	544266	19751721	31552845	551	50371											
SCARF2	91179	broad.mit.edu	37	chr22	20781765	20781765	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccgagaggaccaggatggtGagggctgctccagccctgag	16	12	0	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20781765	A	A	20781765	3	1	45	1	0	0	0	0	1	0	0	0	13996	1294	45	4	992	4	SCARF2	22	20781765	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1030044	20781765	30522801	552	50372											
MYO18B	84700	broad.mit.edu	37	chr22	26422651	26422651	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagtacaaatacatccccGctgtcgagggaaaagctgcc	11	12	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26422651	A	A	26422651	2	1	45	1	0	0	0	0	0	0	0	1	10160	1074	38	4		4	MYO18B	22	26422651	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5640886	26422651	24881915	553	50373											
C22orf31	25770	broad.mit.edu	37	chr22	29454777	29454777	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttcttgagtacaggctcctCgtggacacctggctgcttcc	10	13	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29454777	G	G	29454777	3	3	45	1	0	0	0	0	1	0	0	0	2165	893	31	4	50	4	C22orf31	22	29454777	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3032126	29454777	21849789	554	50374											
NEFH	4744	broad.mit.edu	37	chr22	29885403	29885403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccccagcaaaggaagagGcaaagtcaccggctgaggcc	13	12	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29885403	T	T	29885403	3	4	45	1	0	0	0	0	1	0	0	0	10409	1203	42	3	1788	3	NEFH	22	29885403	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	430626	29885403	21419163	555	50375											
THOC5	8563	broad.mit.edu	37	chr22	29915087	29915087	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatgtggctggcgctcagcGagtggtcagcaatcactgtt	13	11	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29915087	A	A	29915087	3	1	45	1	0	0	0	0	1	0	0	0	15991	1059	37	4	678	4	THOC5	22	29915087	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	29684	29915087	21389479	556	50376											
BPIL2	254240	broad.mit.edu	37	chr22	32843317	32843317	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttggaaatgaaaaggcacTgatttttatactgtaaaacc	7	5	0	2	rs143287045	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32843317	C	C	32843317	3	2	45	1	0	0	0	0	1	0	0	0	1501	1580	55	5	1319	5	BPIL2	22	32843317	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	2928230	32843317	18461249	557	50377											
TNRC6B	23112	broad.mit.edu	37	chr22	40660763	40660763	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcgggagcctcctccaacAacggcacctcccccaaccca	7	21	0	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40660763	G	G	40660763	3	3	45	1	0	0	0	0	1	0	0	0	16464	130	5	5	668	5	TNRC6B	22	40660763	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	7817446	40660763	10643803	558	50378											
TNRC6B	23112	broad.mit.edu	37	chr22	40662984	40662984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggataagaattcccaaggggGcccagcacctcgagaaccaa	11	12	0	2	rs143708410	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40662984	C	C	40662984	3	2	45	1	0	0	0	0	1	0	0	0	16464	1203	42	4	2889	4	TNRC6B	22	40662984	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2221	40662984	10641582	559	50379											
FBLN1	2192	broad.mit.edu	37	chr22	45927207	45927207	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaatgaccgctgccgaggtGagactcgggcgtctcccatc	13	13	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45927207	A	A	45927207	1	1	45	0	1	0	0	0	0	0	0	0	5755	1305	45	4		4	FBLN1	22	45927207	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5264223	45927207	5377359	560	50380											
RABL2B	11158	broad.mit.edu	37	chr22	51208446	51208446	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgtacatcaaacaccTgcaaagggcagaggaagaaa	9	10	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51208446	C	C	51208446	5	2	45	1	0	0	0	0	0	0	1	0	13079	1594	55	5	439	5	RABL2B	22	51208446	Splice_Site	SNP	T	TCGA-17-Z012-01A-01W-0746-08	5281239	51208446	96120	561	50381											
CSF2RA	1438	broad.mit.edu	37	chrX	1428423	1428423	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccgcctccgcgacacggGggaactgttttcttgatgat	11	12	2	2	rs143398916	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1428423	A	A	1428423	1	1	45	0	1	0	0	0	0	0	0	0	3968	1232	43	4		4	CSF2RA	23	1428423	3'UTR	SNP	G	TCGA-17-Z012-01A-01W-0746-08		1428423	153842137	562	50382											
MXRA5	25878	broad.mit.edu	37	chrX	3240577	3240577	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatcagtaaggtgtcttgaGtgcttagactacttttcaca	8	7	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3240577	A	A	3240577	3	1	45	1	0	0	0	0	1	0	0	0	10097	1029	36	4	5349	4	MXRA5	23	3240577	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	1812154	3240577	152029983	563	50383											
PRPS2	5634	broad.mit.edu	37	chrX	12828224	12828224	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaacattgccgagtggaaGaactgtatcattgtttcacc	9	8	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12828224	A	A	12828224	2	1	45	1	0	0	0	0	0	0	0	1	12686	933	33	4		4	PRPS2	23	12828224	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	9587647	12828224	142442336	564	50384											
CDKL5	6792	broad.mit.edu	37	chrX	18593605	18593605	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttggtgtttgagtatgttGaaaaagtaagtcattaattg	10	2	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18593605	A	A	18593605	3	1	45	1	0	0	0	0	1	0	0	0	3187	1291	45	4	291	4	CDKL5	23	18593605	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	5765381	18593605	136676955	565	50385											
CNKSR2	22866	broad.mit.edu	37	chrX	21545093	21545093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggatctctacattccccctCctcctgcagaaccatatatt	4	15	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21545093	A	A	21545093	3	1	45	1	0	0	0	0	1	0	0	0	3639	855	30	3	1104	3	CNKSR2	23	21545093	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2951488	21545093	133725467	566	50386											
FAM48B2	170067	broad.mit.edu	37	chrX	24330931	24330931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagtctgcatggttggacGtagaagaatatgcctgcttt	11	6	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24330931	T	T	24330931	3	4	45	1	0	0	0	0	1	0	0	0	5625	1145	40	3	1954	3	FAM48B2	23	24330931	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	2785838	24330931	130939629	567	50387											
MAGEB6	158809	broad.mit.edu	37	chrX	26212459	26212459	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtgtttcaggctcaaaaTatgatgtggctgccgagggt	14	7	2	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26212459	A	A	26212459	3	1	45	1	0	0	0	0	1	0	0	0	9271	1406	49	5	498	5	MAGEB6	23	26212459	Missense_Mutation	SNP	T	TCGA-17-Z012-01A-01W-0746-08	1881528	26212459	129058101	568	50388											
CXorf22	170063	broad.mit.edu	37	chrX	35970091	35970091	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccccaaagtaagcaaaaAttaatttcattgtaatgtta	4	7	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35970091	C	C	35970091	1	2	45	0	1	0	0	0	0	0	0	0	4135	116	4	5		5	CXorf22	23	35970091	Intron	SNP	A	TCGA-17-Z012-01A-01W-0746-08	9757632	35970091	119300469	569	50389											
FAM47C	442444	broad.mit.edu	37	chrX	37028042	37028042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccttctgagactggagtgtCccatctccgcccagagcctc	10	16	2	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37028042	A	A	37028042	3	1	45	1	0	0	0	0	1	0	0	0	5622	855	30	3	1561	3	FAM47C	23	37028042	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1057951	37028042	118242518	570	50390											
EDA2R	60401	broad.mit.edu	37	chrX	65819703	65819703	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaactgcagcaaacctcCtgcaactcgaagcagaaagc	7	14	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65819703	A	A	65819703	5	1	45	1	0	0	0	0	0	0	1	0	4944	695	24	2	380	2	EDA2R	23	65819703	Splice_Site	SNP	C	TCGA-17-Z012-01A-01W-0746-08	28791661	65819703	89450857	571	50391											
ZMYM3	9203	broad.mit.edu	37	chrX	70468873	70468873	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggctttgcacctaccagtGagccctgcctgcttcacttt	9	14	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70468873	A	A	70468873	2	1	45	1	0	0	0	0	0	0	0	1	17827	1277	45	4		4	ZMYM3	23	70468873	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4649170	70468873	84801687	572	50392											
NAP1L2	4674	broad.mit.edu	37	chrX	72433014	72433014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaacttcctcaattgcagCcatccaattatcataaataa	2	10	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72433014	A	A	72433014	3	1	45	1	0	0	0	0	1	0	0	0	10251	739	26	3	71	3	NAP1L2	23	72433014	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1964141	72433014	82837546	573	50393											
TBX22	50945	broad.mit.edu	37	chrX	79282266	79282266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatagagcaaggcagcagtGttgacctgtcccagattcag	12	9	1	4			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79282266	T	T	79282266	3	4	45	1	0	0	0	0	1	0	0	0	15780	1377	48	3	715	3	TBX22	23	79282266	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	6849252	79282266	75988294	574	50394											
POU3F4	5456	broad.mit.edu	37	chrX	82763633	82763633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatcaccgctcgccacacGtagcccaccactcaccgcac	5	22	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763633	A	A	82763633	3	1	45	1	0	0	0	0	1	0	0	0	12373	1145	40	4	303	4	POU3F4	23	82763633	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	3481367	82763633	72506927	575	50395											
KLHL4	56062	broad.mit.edu	37	chrX	86887276	86887276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatattggcaccatgaatgGccgtaggcttcaatttggag	11	8	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86887276	T	T	86887276	3	4	45	1	0	0	0	0	1	0	0	0	8462	1203	42	3	1417	3	KLHL4	23	86887276	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4123643	86887276	68383284	576	50396											
ARMCX3	51566	broad.mit.edu	37	chrX	100880885	100880885	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaagttattcttaaacttCtggtcatatttgagaacata	6	5	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100880885	T	T	100880885	2	4	45	1	0	0	0	0	0	0	0	1	965	912	32	4		4	ARMCX3	23	100880885	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	13993609	100880885	54389675	577	50397											
NXF5	55998	broad.mit.edu	37	chrX	101092485	101092485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctctctgggcctgccCgagggaggaagcaggtgttc	16	11	2	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101092485	A	A	101092485	3	1	45	1	0	0	0	0	1	0	0	0	10881	652	23	1	44	1	NXF5	23	101092485	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	211600	101092485	54178075	578	50398											
TEX13A	56157	broad.mit.edu	37	chrX	104463680	104463680	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagccagattcccttcccaCagtcgaagcaagtatccctc	7	16	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104463680	T	T	104463680	3	4	45	1	0	0	0	0	1	0	0	0	15898	478	17	4	37	4	TEX13A	23	104463680	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	3371195	104463680	50806880	579	50399											
COL4A6	1288	broad.mit.edu	37	chrX	107400278	107400278	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgactgactcgagtgtggagCtgcccagctttcagcgtttc	12	12	1	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107400278	T	T	107400278	2	4	45	1	0	0	0	0	0	0	0	1	3727	796	28	4		4	COL4A6	23	107400278	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	2936598	107400278	47870282	580	50400											
COL4A5	1287	broad.mit.edu	37	chrX	107829971	107829971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccacctggccttcctggaCctccaggtaaatgagattgc	10	13	0	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107829971	A	A	107829971	3	1	45	1	0	0	0	0	1	0	0	0	3726	507	18	3	1233	3	COL4A5	23	107829971	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	429693	107829971	47440589	581	50401											
GUCY2F	2986	broad.mit.edu	37	chrX	108619318	108619318	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccacttacccatctttgtCcactggtgggggcacaggaa	10	13	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108619318	T	T	108619318	3	4	45	1	0	0	0	0	1	0	0	0	6963	855	30	4	105	4	GUCY2F	23	108619318	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	789347	108619318	46651242	582	50402											
ODZ1	10178	broad.mit.edu	37	chrX	123657346	123657346	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcgggtctgatacaactctCtgcatggtgactttctctac	10	11	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123657346	T	T	123657346	2	4	45	1	0	0	0	0	0	0	0	1	10929	912	32	4		4	ODZ1	23	123657346	Silent	SNP	C	TCGA-17-Z012-01A-01W-0746-08	15038028	123657346	31613214	583	50403											
DDX26B	203522	broad.mit.edu	37	chrX	134681056	134681056	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctatttatttttccttctgGgataggtcgctcctactgtg	9	9	1	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134681056	A	A	134681056	1	1	45	0	1	0	0	0	0	0	0	0	4386	1247	43	4		4	DDX26B	23	134681056	Intron	SNP	G	TCGA-17-Z012-01A-01W-0746-08	11023710	134681056	20589504	584	50404											
GPR112	139378	broad.mit.edu	37	chrX	135429475	135429475	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgccagcttggctactggcAccacagagacctctgttgtt	10	12	1	1	rs143441217	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135429475	T	T	135429475	3	4	45	1	0	0	0	0	1	0	0	0	6694	159	6	5	3620	5	GPR112	23	135429475	Missense_Mutation	SNP	A	TCGA-17-Z012-01A-01W-0746-08	748419	135429475	19841085	585	50405											
LDOC1	23641	broad.mit.edu	37	chrX	140270979	140270979	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagaatcggttctcgttcacGagcatgtaagacgccgtctg	11	11	3	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140270979	A	A	140270979	2	1	45	1	0	0	0	0	0	0	0	1	8781	1045	37	4		4	LDOC1	23	140270979	Silent	SNP	G	TCGA-17-Z012-01A-01W-0746-08	4841504	140270979	14999581	586	50406											
MAGEC1	9947	broad.mit.edu	37	chrX	140992863	140992863	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtcagagccatcatggGtgagtttctcagctgaggcc	12	10	3	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140992863	T	T	140992863	5	4	45	1	0	0	0	0	0	0	1	0	9272	1275	44	3	7	3	MAGEC1	23	140992863	Splice_Site	SNP	G	TCGA-17-Z012-01A-01W-0746-08	721884	140992863	14277697	587	50407											
MAGEC1	9947	broad.mit.edu	37	chrX	140994329	140994329	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagattcctgggagcccctCcttctcctccactttactga	6	17	1	2			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140994329	T	T	140994329	3	4	45	1	0	0	0	0	1	0	0	0	9272	855	30	4	1145	4	MAGEC1	23	140994329	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1466	140994329	14276231	588	50408											
CD99L2	83692	broad.mit.edu	37	chrX	149983368	149983368	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acccggtttcctgcggccatCatcttgatcatccaaagcat	7	14	3	1			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149983368	G	G	149983368	3	3	45	1	0	0	0	0	1	0	0	0	3081	826	29	4	576	4	CD99L2	23	149983368	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	8989039	149983368	5287192	589	50409											
CNGA2	1260	broad.mit.edu	37	chrX	150911747	150911747	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcactttgcccgcatgtttGagttctttgaccggacagag	11	10	1	3			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150911747	C	C	150911747	3	2	45	1	0	0	0	0	1	0	0	0	3629	1291	45	4	794	4	CNGA2	23	150911747	Missense_Mutation	SNP	G	TCGA-17-Z012-01A-01W-0746-08	928379	150911747	4358813	590	50410											
ATP2B3	492	broad.mit.edu	37	chrX	152845701	152845701	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccaagtcagctacctcttCagtgttttcctccagtcccg	6	16	3	0			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152845701	T	T	152845701	3	4	45	1	0	0	0	0	1	0	0	0	1145	838	29	4	3844	4	ATP2B3	23	152845701	Missense_Mutation	SNP	C	TCGA-17-Z012-01A-01W-0746-08	1933954	152845701	2424859	591	50411											
TNFRSF25	8718	broad.mit.edu	37	chr1	6522596	6522596	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtccactagggctacccGgtgctggccgcgtgccaagc	13	15	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6522596	A	A	6522596	1	1	46	0	1	0	0	0	0	0	0	0	16419	1131	39	4		4	TNFRSF25	1	6522596	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08		6522596	242728025	1	50412											
UBE4B	10277	broad.mit.edu	37	chr1	10239600	10239606	+	Frame_Shift_Del	DEL	CAGAGAG	-	-													cttcaaccggcagacgctgaCagagagcatgctggaaccag							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10239606	-	-	10239600	7	5	46	1	0	1	0	1	0	0	0	0	17009	478	17	0	3933	0	UBE4B	1	10239600	Frame_Shift_Del	DEL	CAGAGAG	TCGA-17-Z013-01A-01W-0746-08	3717004	10239600	239011021	2	50413											
EIF4G3	8672	broad.mit.edu	37	chr1	21183973	21183973	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacagtgttccacccaccttCgtccactctctggacacctg	6	17	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21183973	A	A	21183973	4	1	46	1	0	0	0	0	0	1	0	0	5080	893	31	3	1715	3	EIF4G3	1	21183973	Nonsense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	10944373	21183973	228066648	3	50414											
PHACTR4	65979	broad.mit.edu	37	chr1	28792819	28792819	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaattggccacaaattcAtagatgtgttagctttttca	8	6	2	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28792819	G	G	28792819	1	3	46	0	1	0	0	0	0	0	0	0	11907	232	8	5		5	PHACTR4	1	28792819	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	7608846	28792819	220457802	4	50415											
COL9A2	1298	broad.mit.edu	37	chr1	40766822	40766822	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacctggtccttcccgccagGatgcctgccaggctctgtct	11	16	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40766822	A	A	40766822	1	1	46	0	1	0	0	0	0	0	0	0	3740	1189	41	4		4	COL9A2	1	40766822	3'UTR	SNP	G	TCGA-17-Z013-01A-01W-0746-08	11974003	40766822	208483799	5	50416											
KLF17	128209	broad.mit.edu	37	chr1	44569574	44569574	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcccagtgcctcccagccAgcgcctgcagcttctcatac	7	19	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44569574	T	T	44569574	1	4	46	0	1	0	0	0	0	0	0	0	8416	203	7	5		5	KLF17	1	44569574	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	3802752	44569574	204681047	6	50417											
SLC44A5	204962	broad.mit.edu	37	chr1	76007131	76007131	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgattacctgtgtcattcAttgagataaaaggctgtctc	10	7	3	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76007131	G	G	76007131	3	3	46	1	0	0	0	0	1	0	0	0	14753	217	8	5	2360	5	SLC44A5	1	76007131	Missense_Mutation	SNP	A	TCGA-17-Z013-01A-01W-0746-08	31437557	76007131	173243490	7	50418											
ATP1A1	476	broad.mit.edu	37	chr1	116942253	116942253	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgaggttgatttcagagaCtgcaaatccaggcgactttc	11	8	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116942253	G	G	116942253	1	3	46	0	1	0	0	0	0	0	0	0	1132	580	20	4		4	ATP1A1	1	116942253	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	40935122	116942253	132308368	8	50419											
HAO2	51179	broad.mit.edu	37	chr1	119935416	119935416	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcctgatgtggtagctgtCcaaaagataggacaggcagg	13	7	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119935416	A	A	119935416	1	1	46	0	1	0	0	0	0	0	0	0	7018	870	30	3		3	HAO2	1	119935416	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	2993163	119935416	129315205	9	50420											
PDE4DIP	9659	broad.mit.edu	37	chr1	144951955	144951955	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcatgcccagtaaatgtTtgctgaataagtgaatctat	10	6	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144951955	C	C	144951955	1	2	46	0	1	0	0	0	0	0	0	0	11737	1856	64	5		5	PDE4DIP	1	144951955	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	25016539	144951955	104298666	10	50421											
NBPF9	400818	broad.mit.edu	37	chr1	145204529	145204529	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacataaaaccatcagatcTcgtgaactcgctcattatca	4	12	4	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145204529	A	A	145204529	1	1	46	0	1	0	0	0	0	0	0	0	10294	1566	54	5		5	NBPF9	1	145204529	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	252574	145204529	104046092	11	50422											
NBPF10	100132406	broad.mit.edu	37	chr1	145289882	145289882	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccacctgagatctggctccAggacttacagcaaggggaac	11	12	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145289882	T	T	145289882	1	4	46	0	1	0	0	0	0	0	0	0	10287	203	7	5		5	NBPF10	1	145289882	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	85353	145289882	103960739	12	50423											
ATP1A2	477	broad.mit.edu	37	chr1	160104082	160104082	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaccccacacacacacacaTacacacacacacatacaccc	0	21	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160104082	C	C	160104082	1	2	46	0	1	0	0	0	0	0	0	0	1133	1421	49	5		5	ATP1A2	1	160104082	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	14814200	160104082	89146539	13	50424											
DCAF6	55827	broad.mit.edu	37	chr1	167971653	167971653	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaatagacataaagtAtgctttaagagttgagagta	9	2	0	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167971653	G	G	167971653	1	3	46	0	1	0	0	0	0	0	0	0	4307	464	16	5		5	DCAF6	1	167971653	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	7867571	167971653	81278968	14	50425											
IPO9	55705	broad.mit.edu	37	chr1	201845342	201845342	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgacaattcagaccaggctCaccggtgccgtcacttagga	10	12	3	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201845342	A	A	201845342	1	1	46	0	1	0	0	0	0	0	0	0	7869	841	29	3		3	IPO9	1	201845342	3'UTR	SNP	C	TCGA-17-Z013-01A-01W-0746-08	33873689	201845342	47405279	15	50426											
LAMB3	3914	broad.mit.edu	37	chr1	209791197	209791197	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcattttctatgcctggtgCccaaattttcctgtttatgc	8	10	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209791197	T	T	209791197	1	4	46	0	1	0	0	0	0	0	0	0	8684	754	26	4		4	LAMB3	1	209791197	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	7945855	209791197	39459424	16	50427											
NENF	29937	broad.mit.edu	37	chr1	212619089	212619089	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcattagggatgtgggaggCaaggcagggatggagaaagg	20	3	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212619089	T	T	212619089	1	4	46	0	1	0	0	0	0	0	0	0	10430	725	25	4		4	NENF	1	212619089	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	2827892	212619089	36631532	17	50428											
MBOAT2	129642	broad.mit.edu	37	chr2	9002620	9002620	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaaggacaatactgaccacGaccaaggaaagagggtctac	11	9	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9002620	C	C	9002620	1	2	46	0	1	0	0	0	0	0	0	0	9450	1073	37	4		4	MBOAT2	2	9002620	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08		9002620	234196753	18	50429											
TAF1B	9014	broad.mit.edu	37	chr2	10045184	10045184	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttaactagtagagtaatAataagcagagtatagaatct	7	4	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10045184	G	G	10045184	1	3	46	0	1	0	0	0	0	0	0	0	15639	377	13	5		5	TAF1B	2	10045184	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	1042564	10045184	233154189	19	50430											
GCKR	2646	broad.mit.edu	37	chr2	27746251	27746251	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagtgctcttgctgggcCaggtcagaagcgcactgcgg	16	11	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27746251	T	T	27746251	3	4	46	1	0	0	0	0	1	0	0	0	6356	594	21	4	1897	4	GCKR	2	27746251	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	17701067	27746251	215453122	20	50431											
VRK2	7444	broad.mit.edu	37	chr2	58345389	58345389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgggacttgccgctaaggGtgaaggaccaaggcaggtgt	17	8	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58345389	T	T	58345389	1	4	46	0	1	0	0	0	0	0	0	0	17347	1276	44	3		3	VRK2	2	58345389	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	30599138	58345389	184853984	21	50432											
SUCLG1	8802	broad.mit.edu	37	chr2	84670519	84670519	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcctgctggctgtgaaaGgtgccctgaggggaaaaagc	15	8	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84670519	A	A	84670519	2	1	46	1	0	0	0	0	0	0	0	1	15482	987	35	4		4	SUCLG1	2	84670519	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08	26325130	84670519	158528854	22	50433											
TMEM131	23505	broad.mit.edu	37	chr2	98451367	98451367	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggctctcatcactccctTggtttcataaggaggaattt	8	10	3	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98451367	C	C	98451367	3	2	46	1	0	0	0	0	1	0	0	0	16167	1821	63	5	4957	5	TMEM131	2	98451367	Missense_Mutation	SNP	T	TCGA-17-Z013-01A-01W-0746-08	13780848	98451367	144748006	23	50434											
LRP1B	53353	broad.mit.edu	37	chr2	141665648	141665648	+	Splice_Site	DEL	T	-	-													gctttgttgatgcatctcccTtaagaaaacagaaatagtgt							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141665648	-	-	141665648	8	5	46	1	0	1	0	1	0	0	1	0	9042	1623	56	0	10761	0	LRP1B	2	141665648	Splice_Site	DEL	T	TCGA-17-Z013-01A-01W-0746-08	43214281	141665648	101533725	24	50435											
SLC4A10	57282	broad.mit.edu	37	chr2	162751304	162751304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaatgggatccaagcattcGaatagagcctcccaaaaatg	9	9	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162751304	T	T	162751304	3	4	46	1	0	0	0	0	1	0	0	0	14765	1058	37	3	1437	3	SLC4A10	2	162751304	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	21085656	162751304	80448069	25	50436											
SSFA2	6744	broad.mit.edu	37	chr2	182760602	182760602	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagttagtgaatattacttAtgtaatctacttgcattcct	5	6	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182760602	T	T	182760602	1	4	46	0	1	0	0	0	0	0	0	0	15301	464	16	5		5	SSFA2	2	182760602	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	20009298	182760602	60438771	26	50437											
COL3A1	1281	broad.mit.edu	37	chr2	189849416	189849416	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggctattgttaatagtccTaacagagtaacaaaaatcac	6	7	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189849416	G	G	189849416	1	3	46	0	1	0	0	0	0	0	0	0	3720	1537	53	5		5	COL3A1	2	189849416	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	7088814	189849416	53349957	27	50438											
PGAP1	80055	broad.mit.edu	37	chr2	197791347	197791347	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaagaaacatggtgccGccaccaccgccgccgccgcc	12	17	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197791347	T	T	197791347	1	4	46	0	1	0	0	0	0	0	0	0	11872	1102	38	3		3	PGAP1	2	197791347	5'UTR	SNP	G	TCGA-17-Z013-01A-01W-0746-08	7941931	197791347	45408026	28	50439											
PARD3B	117583	broad.mit.edu	37	chr2	206058069	206058069	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagggtgaggtgacatccAggtcagctctccagcctcag	13	12	3	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206058069	G	G	206058069	1	3	46	0	1	0	0	0	0	0	0	0	11538	203	7	5		5	PARD3B	2	206058069	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	8266722	206058069	37141304	29	50440											
RBMS3	27303	broad.mit.edu	37	chr3	29401681	29401681	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtgggcatttagtgctAtaaatttccctctacacact	6	10	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29401681	G	G	29401681	1	3	46	0	1	0	0	0	0	0	0	0	13258	464	16	5		5	RBMS3	3	29401681	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08		29401681	168620749	30	50441											
ENTPD3	956	broad.mit.edu	37	chr3	40433763	40433763	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccatctctggctgaagccAggagaagttagtgtaagacg	12	10	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40433763	T	T	40433763	1	4	46	0	1	0	0	0	0	0	0	0	5182	203	7	5		5	ENTPD3	3	40433763	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	11032082	40433763	157588667	31	50442											
ULK4	54986	broad.mit.edu	37	chr3	41308840	41308840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggacatgatcttattcCtttttatggctgcatagtac	7	8	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41308840	A	A	41308840	1	1	46	0	1	0	0	0	0	0	0	0	17104	696	24	2		2	ULK4	3	41308840	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	875077	41308840	156713590	32	50443											
CDCP1	64866	broad.mit.edu	37	chr3	45134661	45134661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaaggaccagcatattgAgctatcccttctttccaaac	7	12	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45134661	G	G	45134661	1	3	46	0	1	0	0	0	0	0	0	0	3123	319	11	5		5	CDCP1	3	45134661	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	3825821	45134661	152887769	33	50444											
DNAH1	25981	broad.mit.edu	37	chr3	52416501	52416502	+	Intron	INS	-	G	G													cacagcagagggcagggctcINSgggggggctggacacaaccc							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52416502	G	G	52416501	6	5	46	0	1	1	1	0	0	0	0	0	4637	899	31	0		0	DNAH1	3	52416501	Intron	INS	-	TCGA-17-Z013-01A-01W-0746-08	7281840	52416501	145605929	34	50445											
CCDC66	285331	broad.mit.edu	37	chr3	56627805	56627805	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatttattgacttttcagAaagtctgtgtgctttagtaa	8	4	2	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56627805	G	G	56627805	1	3	46	0	1	0	0	0	0	0	0	0	2866	261	9	5		5	CCDC66	3	56627805	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	4211304	56627805	141394625	35	50446											
CCDC52	152185	broad.mit.edu	37	chr3	113223196	113223197	+	Intron	DEL	AA	-	-													gtcaaaaatggcttctgatcAaagactaaactttttggcca					rs5851898		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113223197	-	-	113223196	6	5	46	0	1	1	0	1	0	0	0	0	2850	145	5	0		0	CCDC52	3	113223196	Intron	DEL	AA	TCGA-17-Z013-01A-01W-0746-08	56595391	113223196	84799234	36	50447											
KTELC1	56983	broad.mit.edu	37	chr3	119204021	119204021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagtcagccaagatcgcGccactgcactccagcctgga	10	15	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119204021	T	T	119204021	1	4	46	0	1	0	0	0	0	0	0	0	8655	1102	38	3		3	KTELC1	3	119204021	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	5980825	119204021	78818409	37	50448											
IQCB1	9657	broad.mit.edu	37	chr3	121509138	121509138	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataacctcactagtaatcaaAtaaatgtaaacagaaaaaat	3	6	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121509138	T	T	121509138	1	4	46	0	1	0	0	0	0	0	0	0	7873	116	4	5		5	IQCB1	3	121509138	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	2305117	121509138	76513292	38	50449											
STAG1	10274	broad.mit.edu	37	chr3	136219176	136219176	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atataagttgaaatcctgatCattttatttggaaggaacag	8	4	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136219176	A	A	136219176	1	1	46	0	1	0	0	0	0	0	0	0	15360	841	29	3		3	STAG1	3	136219176	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	14710038	136219176	61803254	39	50450											
SLC25A36	55186	broad.mit.edu	37	chr3	140692807	140692807	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgatgctagctgctgcCacctcaaaaacttgtgccac	9	12	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140692807	T	T	140692807	2	4	46	1	0	0	0	0	0	0	0	1	14614	581	21	4		4	SLC25A36	3	140692807	Silent	SNP	C	TCGA-17-Z013-01A-01W-0746-08	4473631	140692807	57329623	40	50451											
PPM1L	151742	broad.mit.edu	37	chr3	160765698	160765698	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagctgaaactggatccctCccttacaccttatacaaaaa	4	12	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160765698	T	T	160765698	1	4	46	0	1	0	0	0	0	0	0	0	12445	870	30	4		4	PPM1L	3	160765698	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	20072891	160765698	37256732	41	50452											
SI	6476	broad.mit.edu	37	chr3	164714142	164714142	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaactgttcctactcttccAtaatttttagtaatgtctcc	3	11	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164714142	T	T	164714142	1	4	46	0	1	0	0	0	0	0	0	0	14410	232	8	5		5	SI	3	164714142	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	3948444	164714142	33308288	42	50453											
WDR49	151790	broad.mit.edu	37	chr3	167240228	167240228	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttccactaaattagtatcTcttttaggaaggaaaaggca	7	7	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167240228	A	A	167240228	3	1	46	1	0	0	0	0	1	0	0	0	17429	1548	54	5	516	5	WDR49	3	167240228	Missense_Mutation	SNP	T	TCGA-17-Z013-01A-01W-0746-08	2526086	167240228	30782202	43	50454											
PLD1	5337	broad.mit.edu	37	chr3	171500402	171500402	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattgtagaatctaggtggTggcttatgggtgttcacctt	13	5	2	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171500402	C	C	171500402	1	2	46	0	1	0	0	0	0	0	0	0	12140	1711	59	5		5	PLD1	3	171500402	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	4260174	171500402	26522028	44	50455											
TTC14	151613	broad.mit.edu	37	chr3	180327571	180327571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctcgcagttccagaagGcattcatctagggcatcctc	8	13	4	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180327571	T	T	180327571	3	4	46	1	0	0	0	0	1	0	0	0	16807	1194	42	3	1630	3	TTC14	3	180327571	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	8827169	180327571	17694859	45	50456											
FGF12	2257	broad.mit.edu	37	chr3	191888533	191888533	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccaataagcttgaaatccAtgtcctctgttaagaacaaa	5	9	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191888533	C	C	191888533	1	2	46	0	1	0	0	0	0	0	0	0	5898	232	8	5		5	FGF12	3	191888533	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	11560962	191888533	6133897	46	50457											
CRIPAK	285464	broad.mit.edu	37	chr4	1389279	1389279	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgctcacacgtgccattGtggagtgcccgcctgctcac	11	16	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1389279	A	A	1389279	3	1	46	1	0	0	0	0	1	0	0	0	3909	1377	48	4	982	4	CRIPAK	4	1389279	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08		1389279	189764997	47	50458											
POLN	353497	broad.mit.edu	37	chr4	2073949	2073949	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgcgacatgggcctggCggagggccccaggcctcctg	16	14	1	0	rs142927427	byFrequency	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2073949	A	A	2073949	2	1	46	1	0	0	0	0	0	0	0	1	12302	755	27	3		3	POLN	4	2073949	Silent	SNP	C	TCGA-17-Z013-01A-01W-0746-08	684670	2073949	189080327	48	50459											
HTT	3064	broad.mit.edu	37	chr4	3213834	3213834	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccgagctgcctgcagagcCggcggcctactggagcaagt	15	14	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3213834	T	T	3213834	3	4	46	1	0	0	0	0	1	0	0	0	7527	652	23	4	6783	4	HTT	4	3213834	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	1139885	3213834	187940442	49	50460											
ZBTB49	166793	broad.mit.edu	37	chr4	4323104	4323104	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaggctggtgttaaggctGtaggaggacccagtttcccc	14	10	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4323104	A	A	4323104	1	1	46	0	1	0	0	0	0	0	0	0	17676	1392	48	4		4	ZBTB49	4	4323104	3'UTR	SNP	G	TCGA-17-Z013-01A-01W-0746-08	1109270	4323104	186831172	50	50461											
CWH43	80157	broad.mit.edu	37	chr4	49018924	49018924	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacgtagctctgcagtctttGattatgccagggctgatctc	10	11	3	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49018924	A	A	49018924	1	1	46	0	1	0	0	0	0	0	0	0	4106	1305	45	4		4	CWH43	4	49018924	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	44695820	49018924	142135352	51	50462											
SCARB2	950	broad.mit.edu	37	chr4	77117804	77117804	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaccacatccatccctacCgcctccaccaccaggggctt	5	20	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77117804	T	T	77117804	1	4	46	0	1	0	0	0	0	0	0	0	13994	667	23	4		4	SCARB2	4	77117804	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	28098880	77117804	114036472	52	50463											
MAPK10	5602	broad.mit.edu	37	chr4	87437039	87437039	+	Intron	DEL	T	-	-													ggttttgttttttgttgttgTtttttttttgttttgttttt					rs113977798		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87437039	-	-	87437039	6	5	46	0	1	1	0	1	0	0	0	0	9364	1740	60	0		0	MAPK10	4	87437039	Intron	DEL	T	TCGA-17-Z013-01A-01W-0746-08	10319235	87437039	103717237	53	50464											
HERC5	51191	broad.mit.edu	37	chr4	89388134	89388134	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgggtaacatagttttgGcaatttactgtattgctaaa	8	6	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89388134	A	A	89388134	1	1	46	0	1	0	0	0	0	0	0	0	7128	1218	42	4		4	HERC5	4	89388134	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	1951095	89388134	101766142	54	50465											
TET2	54790	broad.mit.edu	37	chr4	106192603	106192603	+	Intron	DEL	G	-	-													agaaggatgtttagaatcaaGaagaatttgcctctgataga							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	106192603	-	-	106192603	6	5	46	0	1	1	0	1	0	0	0	0	15892	957	33	0		0	TET2	4	106192603	Intron	DEL	G	TCGA-17-Z013-01A-01W-0746-08	16804469	106192603	84961673	55	50466											
KIAA1109	84162	broad.mit.edu	37	chr4	123164129	123164129	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaaatatattaaaaatctAgactatagtattttatattc	5	3	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123164129	T	T	123164129	1	4	46	0	1	0	0	0	0	0	0	0	8278	435	15	5		5	KIAA1109	4	123164129	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	16971526	123164129	67990147	56	50467											
KIAA1109	84162	broad.mit.edu	37	chr4	123192676	123192676	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagatctgaaagaagaacatCaaaagtgtctaggaaaggtt	10	4	3	4			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123192676	G	G	123192676	4	3	46	1	0	0	0	0	0	1	0	0	8278	838	29	4	8175	4	KIAA1109	4	123192676	Nonsense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	28547	123192676	67961600	57	50468											
DCLK2	166614	broad.mit.edu	37	chr4	151039777	151039777	+	Intron	DEL	A	-	-													tagaaaaatgtaaacaattcAgaaatacgaaaactgagagt					rs113555441		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151039777	-	-	151039777	6	5	46	0	1	1	0	1	0	0	0	0	4325	203	7	0		0	DCLK2	4	151039777	Intron	DEL	A	TCGA-17-Z013-01A-01W-0746-08	27847101	151039777	40114499	58	50469											
CLCN3	1182	broad.mit.edu	37	chr4	170618824	170618824	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagtatattcagctatatGgcagttatgcctggcactca	10	8	2	0	rs67071267		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170618824	A	A	170618824	4	1	46	1	0	0	0	0	0	1	0	0	3495	1357	47	4	1532	4	CLCN3	4	170618824	Nonsense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	19579047	170618824	20535452	59	50470											
CDH18	1016	broad.mit.edu	37	chr5	19585667	19585668	+	Intron	DNP	CC	AA	AA													gattcttttgaggttcatctCcacccataatgaatcttttt							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	19585668	AA	AA	19585667	1	1	46	0	1	0	0	0	0	0	0	0	3133	870	30	3		3	CDH18	5	19585667	Intron	DNP	CC	TCGA-17-Z013-01A-01W-0746-08		19585667	161329593	60	50471											
ITGA2	3673	broad.mit.edu	37	chr5	52351368	52351368	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaattttatctgccacagAaaatatgcttattcagcagc	5	8	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52351368	G	G	52351368	2	3	46	1	0	0	0	0	0	0	0	1	7945	260	9	5		5	ITGA2	5	52351368	Silent	SNP	A	TCGA-17-Z013-01A-01W-0746-08	32765701	52351368	128563892	61	50472											
TMEM161B	153396	broad.mit.edu	37	chr5	87521733	87521733	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagttacctacactgttaTccaagtgcttgtttcaaact	5	10	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87521733	C	C	87521733	1	2	46	0	1	0	0	0	0	0	0	0	16200	1450	50	5		5	TMEM161B	5	87521733	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	35170365	87521733	93393527	62	50473											
APC	324	broad.mit.edu	37	chr5	112174160	112174160	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatgccaaattagaatacAagagatcttcaaatgatagt	6	6	2	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112174160	T	T	112174160	4	4	46	1	0	0	0	0	0	1	0	0	765	131	5	5	2927	5	APC	5	112174160	Nonsense_Mutation	SNP	A	TCGA-17-Z013-01A-01W-0746-08	24652427	112174160	68741100	63	50474											
CEP120	153241	broad.mit.edu	37	chr5	122737112	122737112	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgatgttccggttcatctCggagatcttagtctttgtgc	11	9	4	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122737112	A	A	122737112	1	1	46	0	1	0	0	0	0	0	0	0	3276	899	31	3		3	CEP120	5	122737112	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	10562952	122737112	58178148	64	50475											
ODZ2	57451	broad.mit.edu	37	chr5	167253012	167253012	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttactccttcccgcagcCcaacacgtcgtgtacctgta	6	17	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167253012	T	T	167253012	1	4	46	0	1	0	0	0	0	0	0	0	10930	638	22	4		4	ODZ2	5	167253012	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	44515900	167253012	13662248	65	50476											
SLIT3	6586	broad.mit.edu	37	chr5	168250219	168250219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagtgctgcactttgggcGtgaggtagggagaaaatggg	18	4	0	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168250219	A	A	168250219	1	1	46	0	1	0	0	0	0	0	0	0	14855	1160	40	4		4	SLIT3	5	168250219	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	997207	168250219	12665041	66	50477											
KCNMB1	3779	broad.mit.edu	37	chr5	169805873	169805873	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcgttcccccgaggtgcGgagaagcagtagaagacctg	14	10	0	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169805873	A	A	169805873	2	1	46	1	0	0	0	0	0	0	0	1	8144	1103	39	4		4	KCNMB1	5	169805873	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08	1555654	169805873	11109387	67	50478											
FARS2	10667	broad.mit.edu	37	chr6	5730441	5730441	+	Intron	DEL	C	-	-													ctgagctgcccaatatccatCctgggacagcagtgccttgg					rs34695728		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5730441	-	-	5730441	6	5	46	0	1	1	0	1	0	0	0	0	5735	870	30	0		0	FARS2	6	5730441	Intron	DEL	C	TCGA-17-Z013-01A-01W-0746-08		5730441	165384626	68	50479											
KIF13A	63971	broad.mit.edu	37	chr6	17855807	17855807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccttggaataaggcccaGctgctcagcatggcccatca	11	13	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17855807	T	T	17855807	3	4	46	1	0	0	0	0	1	0	0	0	8344	962	34	3	5223	3	KIF13A	6	17855807	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	12125366	17855807	153259260	69	50480											
GPLD1	2822	broad.mit.edu	37	chr6	24436895	24436895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattatatacatatactcggCcgtcttctcccccaatcagt	4	14	3	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24436895	A	A	24436895	3	1	46	1	0	0	0	0	1	0	0	0	6679	739	26	3	271	3	GPLD1	6	24436895	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	6581088	24436895	146678172	70	50481											
BAT5	7920	broad.mit.edu	37	chr6	31660964	31660964	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagggaaggatagggtcagGagcagcaagctggatgtctg	18	6	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31660964	A	A	31660964	1	1	46	0	1	0	0	0	0	0	0	0	1329	1189	41	4		4	BAT5	6	31660964	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	7224069	31660964	139454103	71	50482											
TINAG	27283	broad.mit.edu	37	chr6	54214469	54214469	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atataaaaaggatattacgaCattctcctaaatattacctt	3	7	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54214469	T	T	54214469	1	4	46	0	1	0	0	0	0	0	0	0	16044	493	17	4		4	TINAG	6	54214469	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	22553505	54214469	116900598	72	50483											
PRIM2	5558	broad.mit.edu	37	chr6	57422987	57422987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgttggtataccattctgCcccaaaccaactcctcctat	5	15	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57422987	T	T	57422987	1	4	46	0	1	0	0	0	0	0	0	0	12597	754	26	4		4	PRIM2	6	57422987	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	3208518	57422987	113692080	73	50484											
BAI3	577	broad.mit.edu	37	chr6	70037663	70037663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttcttagaccagtatgCatagtggttatagctaaata	8	6	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70037663	A	A	70037663	1	1	46	0	1	0	0	0	0	0	0	0	1305	725	25	3		3	BAI3	6	70037663	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	12614676	70037663	101077404	74	50485											
DCBLD1	285761	broad.mit.edu	37	chr6	117859994	117859994	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggggagaaaaagaaaatAacaggtgcagaaaataacac	11	4	0	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117859994	G	G	117859994	3	3	46	1	0	0	0	0	1	0	0	0	4313	352	13	5	1002	5	DCBLD1	6	117859994	Missense_Mutation	SNP	A	TCGA-17-Z013-01A-01W-0746-08	47822331	117859994	53255073	75	50486											
PARK2	5071	broad.mit.edu	37	chr6	162575077	162575077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggctttgccagggacCtgccttgtctgccaagagtt	15	10	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162575077	A	A	162575077	1	1	46	0	1	0	0	0	0	0	0	0	11543	696	24	2		2	PARK2	6	162575077	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	44715083	162575077	8539990	76	50487											
HDAC9	9734	broad.mit.edu	37	chr7	18874929	18874929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaagtaaagggggtggtGtggaagcaggctgaaaggga	20	3	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18874929	T	T	18874929	1	4	46	0	1	0	0	0	0	0	0	0	7081	1392	48	3		3	HDAC9	7	18874929	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08		18874929	140263734	77	50488											
RAPGEF5	9771	broad.mit.edu	37	chr7	22306482	22306482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattctttgcattctacacCataacttcctgagatacact	3	11	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22306482	A	A	22306482	1	1	46	0	1	0	0	0	0	0	0	0	13155	609	21	2		2	RAPGEF5	7	22306482	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	3431553	22306482	136832181	78	50489											
JAZF1	221895	broad.mit.edu	37	chr7	28150403	28150403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcctgaagactaagacGtggtgatgtgcccacatggc	13	9	0	4			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28150403	T	T	28150403	1	4	46	0	1	0	0	0	0	0	0	0	8016	1160	40	3		3	JAZF1	7	28150403	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	5843921	28150403	130988260	79	50490											
TARP	445347	broad.mit.edu	37	chr7	38301643	38301643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaactcctagaaaatgagGgactaatttaaaatatcact	5	7	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38301643	T	T	38301643	1	4	46	0	1	0	0	0	0	0	0	0	15677	1247	43	2		2	TARP	7	38301643	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	10151240	38301643	120837020	80	50491											
POM121L12	285877	broad.mit.edu	37	chr7	53104228	53104228	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttcgccctcgaggtcacCcagtctgctggcccctttgg	10	17	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104228	T	T	53104228	2	4	46	1	0	0	0	0	0	0	0	1	12336	610	22	4		4	POM121L12	7	53104228	Silent	SNP	C	TCGA-17-Z013-01A-01W-0746-08	14802585	53104228	106034435	81	50492											
ZNF107	51427	broad.mit.edu	37	chr7	64168663	64168663	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagataattcatactggaGagaaaccttacaaatgtaaa	6	5	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64168663	T	T	64168663	4	4	46	1	0	0	0	0	0	1	0	0	17841	943	33	3	1987	3	ZNF107	7	64168663	Nonsense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	11064435	64168663	94970000	82	50493											
PEX1	5189	broad.mit.edu	37	chr7	92130730	92130744	+	Intron	DEL	GAGATTGGGCAAGCT	-	-													aacacttgttgactcacacgGagattgggcaagctgacaca							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92130744	-	-	92130730	6	5	46	0	1	1	0	1	0	0	0	0	11830	1189	41	0		0	PEX1	7	92130730	Intron	DEL	GAGATTGGGCAAGCT	TCGA-17-Z013-01A-01W-0746-08	27962067	92130730	67007933	83	50494											
OCM2	4951	broad.mit.edu	37	chr7	97618118	97618118	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctcctctcctctgtgcctCcccctccccctggcccactt	4	24	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97618118	A	A	97618118	1	1	46	0	1	0	0	0	0	0	0	0	10917	870	30	3		3	OCM2	7	97618118	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	5487388	97618118	61520545	84	50495											
NRCAM	4897	broad.mit.edu	37	chr7	107799863	107799863	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctattctcgggactgtgTtcatgtgggcagagaagatg	14	6	3	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107799863	C	C	107799863	1	2	46	0	1	0	0	0	0	0	0	0	10739	1740	60	5		5	NRCAM	7	107799863	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	10181745	107799863	51338800	85	50496											
MET	4233	broad.mit.edu	37	chr7	116397814	116397814	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcaattggtggaaaaacAtgtactttaaaaaggtgttg	9	3	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116397814	T	T	116397814	2	4	46	1	0	0	0	0	0	0	0	1	9578	204	8	5		5	MET	7	116397814	Silent	SNP	A	TCGA-17-Z013-01A-01W-0746-08	8597951	116397814	42740849	86	50497											
KCND2	3751	broad.mit.edu	37	chr7	120311803	120311803	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatggtgcaccctttcaaCcactgttttgccagtttttt	6	12	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120311803	T	T	120311803	1	4	46	0	1	0	0	0	0	0	0	0	8089	522	18	4		4	KCND2	7	120311803	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	3913989	120311803	38826860	87	50498											
MEST	4232	broad.mit.edu	37	chr7	130137853	130137853	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttggcttcagtgacaaacCggtaagcagcacctatgtgg	11	10	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130137853	T	T	130137853	3	4	46	1	0	0	0	0	1	0	0	0	9577	666	23	4	352	4	MEST	7	130137853	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	9826050	130137853	29000810	88	50499											
BRAF	673	broad.mit.edu	37	chr7	140461836	140461836	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actcagctctgcaccaagggGacctaatagacatctacaga	8	12	3	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140461836	C	C	140461836	1	2	46	0	1	0	0	0	0	0	0	0	1505	1189	41	4		4	BRAF	7	140461836	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	10323983	140461836	18676827	89	50500											
GIMAP2	26157	broad.mit.edu	37	chr7	150384738	150384738	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgcacaaatctttcagatCtctttgaaatactccttctc	3	11	4	2	rs113153089	by1000genomes	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150384738	A	A	150384738	1	1	46	0	1	0	0	0	0	0	0	0	6444	928	32	3		3	GIMAP2	7	150384738	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	9922902	150384738	8753925	90	50501											
RBM33	155435	broad.mit.edu	37	chr7	155567376	155567376	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcttgtggtgataaggGggcgggagcaaggccctcct	17	9	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155567376	A	A	155567376	1	1	46	0	1	0	0	0	0	0	0	0	13238	1247	43	4		4	RBM33	7	155567376	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	5182638	155567376	3571287	91	50502											
CSMD1	64478	broad.mit.edu	37	chr8	3245077	3245077	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacagacgaggggctcgtcGtcacttagtgtgtaccccgg	13	12	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3245077	A	A	3245077	2	1	46	1	0	0	0	0	0	0	0	1	3978	1136	40	4		4	CSMD1	8	3245077	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08		3245077	143118945	92	50503											
SORBS3	10174	broad.mit.edu	37	chr8	22422101	22422101	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattagggttttggtggcccCagtaaccatgggcataggcc	14	9	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22422101	T	T	22422101	1	4	46	0	1	0	0	0	0	0	0	0	15043	609	21	4		4	SORBS3	8	22422101	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	19177024	22422101	123941921	93	50504											
NRG1	3084	broad.mit.edu	37	chr8	32340428	32340428	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgatgttagggaacaaccCcagctttaaaacttatttat	7	7	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32340428	G	G	32340428	1	3	46	0	1	0	0	0	0	0	0	0	10742	638	22	4		4	NRG1	8	32340428	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	9918327	32340428	114023594	94	50505											
C8orf41	80185	broad.mit.edu	37	chr8	33370942	33370942	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattacggtagtcaccctatGtgtaaattagtggcacatac	8	9	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33370942	C	C	33370942	1	2	46	0	1	0	0	0	0	0	0	0	2453	1392	48	4		4	C8orf41	8	33370942	5'Flank	SNP	G	TCGA-17-Z013-01A-01W-0746-08	1030514	33370942	112993080	95	50506											
ST18	9705	broad.mit.edu	37	chr8	53071600	53071600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataagagctggcacggccaGggctctgggtgtgggcgcct	17	10	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53071600	T	T	53071600	3	4	46	1	0	0	0	0	1	0	0	0	15330	1000	35	2	1527	2	ST18	8	53071600	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	19700658	53071600	93292422	96	50507											
ST18	9705	broad.mit.edu	37	chr8	53278848	53278848	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctctccctgtttcaatgtTgcccctcacaaaaaacactg	5	15	3	0	rs143648098	by1000genomes	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53278848	C	C	53278848	1	2	46	0	1	0	0	0	0	0	0	0	15330	1827	63	5		5	ST18	8	53278848	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	207248	53278848	93085174	97	50508											
LYN	4067	broad.mit.edu	37	chr8	56893509	56893509	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctccccgcggccgcttgctAgcccctggccacccccgtgc	11	22	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56893509	T	T	56893509	1	4	46	0	1	0	0	0	0	0	0	0	9195	435	15	5		5	LYN	8	56893509	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	3614661	56893509	89470513	98	50509											
EYA1	2138	broad.mit.edu	37	chr8	72234494	72234494	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgggctgaaactactgCtcccaattgctggaaaacaa	10	10	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72234494	T	T	72234494	3	4	46	1	0	0	0	0	1	0	0	0	5371	797	28	4	1622	4	EYA1	8	72234494	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	15340985	72234494	74129528	99	50510											
PTPRD	5789	broad.mit.edu	37	chr9	8493033	8493034	+	Intron	DNP	GG	AT	AT													aacatgctactaatgctctgGgggaaaaacaaggccgtctg							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	8493034	AT	AT	8493033	1	1	46	0	1	0	0	0	0	0	0	0	12907	1247	43	4		4	PTPRD	9	8493033	Intron	DNP	GG	TCGA-17-Z013-01A-01W-0746-08		8493033	132720398	100	50511											
DCAF12	25853	broad.mit.edu	37	chr9	34125044	34125044	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcattttgtgccacacaCcacttgcctatgattcaacc	6	13	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34125044	A	A	34125044	3	1	46	1	0	0	0	0	1	0	0	0	4296	507	18	3	1083	3	DCAF12	9	34125044	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	25632011	34125044	107088387	101	50512											
TLE1	7088	broad.mit.edu	37	chr9	84268781	84268781	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacttcagctgtaacagaTgttcttcacacttgttcctt	5	12	3	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84268781	G	G	84268781	1	3	46	0	1	0	0	0	0	0	0	0	16061	1479	51	5		5	TLE1	9	84268781	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	50143737	84268781	56944650	102	50513											
SHC3	53358	broad.mit.edu	37	chr9	91680560	91680560	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaccacacagtcagggacAcagggcacaaaccagtgagc	12	12	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91680560	G	G	91680560	1	3	46	0	1	0	0	0	0	0	0	0	14385	174	6	5		5	SHC3	9	91680560	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	7411779	91680560	49532871	103	50514											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112579565	112579565	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagaggccaattttgagcTaggagtttcccatgcatatg	10	8	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112579565	C	C	112579565	1	2	46	0	1	0	0	0	0	0	0	0	11504	1537	53	5		5	PALM2-AKAP2	9	112579565	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	20899005	112579565	28633866	104	50515											
GSN	2934	broad.mit.edu	37	chr9	124088878	124088878	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaagggcggcacctcccGcgagggcgggcagacagccc	15	16	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124088878	A	A	124088878	3	1	46	1	0	0	0	0	1	0	0	0	6891	1087	38	4	1732	4	GSN	9	124088878	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	11509313	124088878	17124553	105	50516											
ANGPTL2	23452	broad.mit.edu	37	chr9	129851205	129851206	+	3'UTR	INS	-	GG	GG													atggccacgagaggtcaggaINSgggggagctggcttagtgga							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	129851206	GG	GG	129851205	6	5	46	0	1	1	1	0	0	0	0	0	614	319	11	0		0	ANGPTL2	9	129851205	3'UTR	INS	-	TCGA-17-Z013-01A-01W-0746-08	5762327	129851205	11362226	106	50517											
STXBP1	6812	broad.mit.edu	37	chr9	130442250	130442251	+	Intron	DEL	TT	-	-													tatctcagtgtagcagctagTtacaaagcatctgctataac							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130442251	-	-	130442250	6	5	46	0	1	1	0	1	0	0	0	0	15470	1740	60	0		0	STXBP1	9	130442250	Intron	DEL	TT	TCGA-17-Z013-01A-01W-0746-08	591045	130442250	10771181	107	50518											
CERCAM	51148	broad.mit.edu	37	chr9	131193524	131193524	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacccttactcgggccGcactctgaccaagggcgagg	13	15	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131193524	A	A	131193524	3	1	46	1	0	0	0	0	1	0	0	0	3296	1087	38	4	1179	4	CERCAM	9	131193524	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	751274	131193524	10019907	108	50519											
NUP214	8021	broad.mit.edu	37	chr9	134077060	134077060	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctagtaatactggttctGtgtttggtcaagcagccagt	12	7	3	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134077060	A	A	134077060	3	1	46	1	0	0	0	0	1	0	0	0	10857	1377	48	4	5666	4	NUP214	9	134077060	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	2883536	134077060	7136371	109	50520											
CUBN	8029	broad.mit.edu	37	chr10	16903056	16903056	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgccttatgccccaaAgcattaccaatgttcaggtt	6	12	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16903056	T	T	16903056	1	4	46	0	1	0	0	0	0	0	0	0	4084	87	3	5		5	CUBN	10	16903056	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08		16903056	118631691	110	50521											
CUBN	8029	broad.mit.edu	37	chr10	16956108	16956108	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctagataaaattagtctcCatatttatttatgtgcatga	5	5	2	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16956108	G	G	16956108	1	3	46	0	1	0	0	0	0	0	0	0	4084	609	21	4		4	CUBN	10	16956108	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	53052	16956108	118578639	111	50522											
NEBL	10529	broad.mit.edu	37	chr10	21169750	21169750	+	Frame_Shift_Del	DEL	G	-	-													tggtgtttattgacctccatGgcatgtttaacctcaggggg							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21169750	-	-	21169750	7	5	46	1	0	1	0	1	0	0	0	0	10398	1335	47	0	2687	0	NEBL	10	21169750	Frame_Shift_Del	DEL	G	TCGA-17-Z013-01A-01W-0746-08	4213642	21169750	114364997	112	50523											
C10orf11	83938	broad.mit.edu	37	chr10	77542781	77542781	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcattcttcaaataaaagGttagccagacaggaccctta	6	9	3	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77542781	T	T	77542781	5	4	46	1	0	0	0	0	0	0	1	0	1593	1275	44	3	50	3	C10orf11	10	77542781	Splice_Site	SNP	G	TCGA-17-Z013-01A-01W-0746-08	56373031	77542781	57991966	113	50524											
WNT8B	7479	broad.mit.edu	37	chr10	102240662	102240662	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggagctagggaaagaggAtataatgatggttattaaag	14	1	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102240662	G	G	102240662	1	3	46	0	1	0	0	0	0	0	0	0	17524	348	12	5		5	WNT8B	10	102240662	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	24697881	102240662	33294085	114	50525											
PPRC1	23082	broad.mit.edu	37	chr10	103897465	103897465	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcataggttgtgcttctctCtgctctgctagcccagaagt	9	12	4	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103897465	T	T	103897465	1	4	46	0	1	0	0	0	0	0	0	0	12511	928	32	4		4	PPRC1	10	103897465	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	1656803	103897465	31637282	115	50526											
TACC2	10579	broad.mit.edu	37	chr10	123843769	123843769	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaggaagccccagagcCacctgatggtggagacccag	14	11	0	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123843769	T	T	123843769	3	4	46	1	0	0	0	0	1	0	0	0	15621	594	21	4	1764	4	TACC2	10	123843769	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	19946304	123843769	11690978	116	50527											
DNHD1	144132	broad.mit.edu	37	chr11	6588872	6588872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagaagctgatcctgtggCgcgttctgcgacctgagtgc	13	12	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6588872	A	A	6588872	3	1	46	1	0	0	0	0	1	0	0	0	4708	768	27	3	12276	3	DNHD1	11	6588872	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08		6588872	128417644	117	50528											
NAV2	89797	broad.mit.edu	37	chr11	19543812	19543813	+	Intron	INS	-	A	A													agccacattgcacccctcacINSaaggcattcgcctccctcca					rs143803741	by1000genomes	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19543813	A	A	19543812	6	5	46	0	1	1	1	0	0	0	0	0	10278	493	17	0		0	NAV2	11	19543812	Intron	INS	-	TCGA-17-Z013-01A-01W-0746-08	12954940	19543812	115462704	118	50529											
NELL1	4745	broad.mit.edu	37	chr11	20975127	20975127	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttactagtgttactggtCattcatggcaacagagctcg	9	8	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20975127	A	A	20975127	1	1	46	0	1	0	0	0	0	0	0	0	10428	841	29	3		3	NELL1	11	20975127	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	1431315	20975127	114031389	119	50530											
MS4A5	64232	broad.mit.edu	37	chr11	60197101	60197102	+	5'UTR	INS	-	A	A													aaagaacatggtctagactgINSaagtaccaactaaatcatct							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60197102	A	A	60197101	6	5	46	0	1	1	1	0	0	0	0	0	9957	1305	45	0		0	MS4A5	11	60197101	5'UTR	INS	-	TCGA-17-Z013-01A-01W-0746-08	39221974	60197101	74809415	120	50531											
MRPL11	65003	broad.mit.edu	37	chr11	66205601	66205601	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccgaggaagaacagagggAgaaggaaaccagggatcaga	17	6	1	4			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66205601	C	C	66205601	1	2	46	0	1	0	0	0	0	0	0	0	9870	319	11	5		5	MRPL11	11	66205601	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	6008500	66205601	68800915	121	50532											
C11orf30	56946	broad.mit.edu	37	chr11	76248892	76248892	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactattgacctgagtcaaAtggcagtgcctattcagatg	9	10	2	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76248892	G	G	76248892	3	3	46	1	0	0	0	0	1	0	0	0	1648	101	4	5	2471	5	C11orf30	11	76248892	Missense_Mutation	SNP	A	TCGA-17-Z013-01A-01W-0746-08	10043291	76248892	58757624	122	50533											
MMP7	4316	broad.mit.edu	37	chr11	102401335	102401335	+	Frame_Shift_Del	DEL	C	-	-													gtgacatacctgagcctgttCccactgtagctcactcatgc					rs147586158		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102401335	-	-	102401335	7	5	46	1	0	1	0	1	0	0	0	0	9761	864	30	0	730	0	MMP7	11	102401335	Frame_Shift_Del	DEL	C	TCGA-17-Z013-01A-01W-0746-08	26152443	102401335	32605181	123	50534											
DYNC2H1	79659	broad.mit.edu	37	chr11	103124071	103124071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactacaatgaagaattccGcctctttttgtcaacaagaa	6	9	2	4			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103124071	T	T	103124071	3	4	46	1	0	0	0	0	1	0	0	0	4886	1087	38	3	10387	3	DYNC2H1	11	103124071	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	722736	103124071	31882445	124	50535											
NTF3	4908	broad.mit.edu	37	chr12	5585082	5585084	+	Intron	DEL	GAG	-	-													aagagaaagaaagaaagaaaGagagaaagagagaaaaagaa							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5585084	-	-	5585082	6	5	46	0	1	1	0	1	0	0	0	0	10791	957	33	0		0	NTF3	12	5585082	Intron	DEL	GAG	TCGA-17-Z013-01A-01W-0746-08		5585082	128266813	125	50536											
KLRC3	3823	broad.mit.edu	37	chr12	10584685	10584685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatatatattttttatatagCgccatacaaaagaacttact	3	6	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10584685	T	T	10584685	1	4	46	0	1	0	0	0	0	0	0	0	8488	783	27	4		4	KLRC3	12	10584685	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	4999603	10584685	123267210	126	50537											
LRP6	4040	broad.mit.edu	37	chr12	12277611	12277611	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaatctaaaagaaaaaaaTaattaaaatattaaaataac	1	3	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12277611	C	C	12277611	1	2	46	0	1	0	0	0	0	0	0	0	9049	1421	49	5		5	LRP6	12	12277611	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	1692926	12277611	121574284	127	50538											
EPS8	2059	broad.mit.edu	37	chr12	15834162	15834163	+	Frame_Shift_Ins	INS	-	A	A													caaataaacaaacctaccatINSaaagggcctttgcacttgtt							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15834163	A	A	15834162	7	5	46	1	0	1	1	0	0	0	0	0	5236	1406	49	0	2410	0	EPS8	12	15834162	Frame_Shift_Ins	INS	-	TCGA-17-Z013-01A-01W-0746-08	3556551	15834162	118017733	128	50539											
ADAMTS20	80070	broad.mit.edu	37	chr12	43858449	43858449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagctcacactgcttgtttCcatcatatcgtgatccagga	7	12	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43858449	A	A	43858449	3	1	46	1	0	0	0	0	1	0	0	0	266	855	30	3	4397	3	ADAMTS20	12	43858449	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	28024287	43858449	89993446	129	50540											
TMEM117	84216	broad.mit.edu	37	chr12	44396626	44396629	+	Intron	DEL	AAAG	-	-													tggacggagaagaggaagttAaagaagacaagaatgagaat					rs113766986		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44396629	-	-	44396626	6	5	46	0	1	1	0	1	0	0	0	0	16154	377	13	0		0	TMEM117	12	44396626	Intron	DEL	AAAG	TCGA-17-Z013-01A-01W-0746-08	538177	44396626	89455269	130	50541											
TMBIM6	7009	broad.mit.edu	37	chr12	50149411	50149411	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgattgattgattctgactCtaacaggctggcctgctgtc	10	9	2	4	rs137944125	by1000genomes	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50149411	G	G	50149411	1	3	46	0	1	0	0	0	0	0	0	0	16106	928	32	4		4	TMBIM6	12	50149411	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	5752785	50149411	83702484	131	50542											
PIP4K2C	79837	broad.mit.edu	37	chr12	57992982	57992982	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcttcctgtgcacaggaaGtatgacctcaaggtaagaag	11	9	2	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57992982	A	A	57992982	2	1	46	1	0	0	0	0	0	0	0	1	12033	1020	36	4		4	PIP4K2C	12	57992982	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08	7843571	57992982	75858913	132	50543											
PTPRB	5787	broad.mit.edu	37	chr12	70983978	70983978	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagacctcatcctgccatTattgtttgcctccaggtttg	8	11	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70983978	C	C	70983978	3	2	46	1	0	0	0	0	1	0	0	0	12904	1754	61	5	4939	5	PTPRB	12	70983978	Missense_Mutation	SNP	T	TCGA-17-Z013-01A-01W-0746-08	12990996	70983978	62867917	133	50544											
ZDHHC17	23390	broad.mit.edu	37	chr12	77235976	77235976	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacagaggaattaactatcGtttagaatgtaaagaagttt	10	3	0	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77235976	A	A	77235976	1	1	46	0	1	0	0	0	0	0	0	0	17733	1160	40	4		4	ZDHHC17	12	77235976	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	6251998	77235976	56615919	134	50545											
EID3	493861	broad.mit.edu	37	chr12	104698108	104698108	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtgggtctgaattggatGgaaggcgatcctgacaagtt	14	6	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104698108	A	A	104698108	3	1	46	1	0	0	0	0	1	0	0	0	5029	1348	47	4	398	4	EID3	12	104698108	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	27462132	104698108	29153787	135	50546											
WSCD2	9671	broad.mit.edu	37	chr12	108629595	108629595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctttaaaatccttcccGcagcctgagcccttgcagtt	9	13	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108629595	T	T	108629595	1	4	46	0	1	0	0	0	0	0	0	0	17534	1102	38	3		3	WSCD2	12	108629595	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	3931487	108629595	25222300	136	50547											
ATXN2	6311	broad.mit.edu	37	chr12	111963132	111963132	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaagcatctgcaaagaatGgttttggttgaaagtttata	9	3	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111963132	A	A	111963132	1	1	46	0	1	0	0	0	0	0	0	0	1215	1363	47	4		4	ATXN2	12	111963132	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	3333537	111963132	21888763	137	50548											
RFC5	5985	broad.mit.edu	37	chr12	118462732	118462732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcatccctgccttgcaGtcccgctgcacgaggtttcg	10	14	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118462732	T	T	118462732	3	4	46	1	0	0	0	0	1	0	0	0	13356	1020	36	3	526	3	RFC5	12	118462732	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	6499600	118462732	15389163	138	50549											
ZNF664	144348	broad.mit.edu	37	chr12	124483609	124483609	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcctttatatgttatgattActggcttagtgcatcgtctc	7	8	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124483609	T	T	124483609	1	4	46	0	1	0	0	0	0	0	0	0	18199	406	14	5		5	ZNF664	12	124483609	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	6020877	124483609	9368286	139	50550											
PABPC3	5042	broad.mit.edu	37	chr13	25670848	25670848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtcgcaaagtatttgttgGacaatttaagtctcgtaaag	10	5	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25670848	T	T	25670848	3	4	46	1	0	0	0	0	1	0	0	0	11459	1174	41	3	514	3	PABPC3	13	25670848	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08		25670848	89499030	140	50551											
TRPC4	7223	broad.mit.edu	37	chr13	38211011	38211011	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactacggaaaatacgtatgTgtatggtaaacgcttcctcc	8	10	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38211011	C	C	38211011	1	2	46	0	1	0	0	0	0	0	0	0	16705	1711	59	5		5	TRPC4	13	38211011	3'UTR	SNP	T	TCGA-17-Z013-01A-01W-0746-08	12540163	38211011	76958867	141	50552											
GPC5	2262	broad.mit.edu	37	chr13	93518459	93518459	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaatgctgtccacactttGagtttaagagttgttctaga	8	7	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93518459	T	T	93518459	1	4	46	0	1	0	0	0	0	0	0	0	6666	1305	45	3		3	GPC5	13	93518459	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	55307448	93518459	21651419	142	50553											
MCF2L	23263	broad.mit.edu	37	chr13	113728838	113728838	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctggcgcatgtggagcaCctgctgagggacctggccag	16	12	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113728838	T	T	113728838	2	4	46	1	0	0	0	0	0	0	0	1	9472	506	18	4		4	MCF2L	13	113728838	Silent	SNP	C	TCGA-17-Z013-01A-01W-0746-08	20210379	113728838	1441040	143	50554											
PRKD1	5587	broad.mit.edu	37	chr14	30195743	30195743	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacagatctgacacttatgTcaatacaggtggaccttaag	9	8	2	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30195743	G	G	30195743	1	3	46	0	1	0	0	0	0	0	0	0	12624	1682	58	5		5	PRKD1	14	30195743	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08		30195743	77153797	144	50555											
AP4S1	11154	broad.mit.edu	37	chr14	31549850	31549850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcactctggtccttatcaGgtaagtaccacaaggcagga	10	10	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31549850	T	T	31549850	1	4	46	0	1	0	0	0	0	0	0	0	756	1014	35	2		2	AP4S1	14	31549850	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	1354107	31549850	75799690	145	50556											
MDGA2	161357	broad.mit.edu	37	chr14	48041101	48041101	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacgtatcccagaacttaAagtataattaaaaaaatact	3	8	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48041101	C	C	48041101	1	2	46	0	1	0	0	0	0	0	0	0	9500	29	1	5		5	MDGA2	14	48041101	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	16491251	48041101	59308439	146	50557											
GPHN	10243	broad.mit.edu	37	chr14	67243072	67243073	+	Intron	DNP	GG	TC	TC													tttttcctccatggttgttgGggtgaatactgggagttatt							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	67243073	TC	TC	67243072	1	4	46	0	1	0	0	0	0	0	0	0	6675	1247	43	2		2	GPHN	14	67243072	Intron	DNP	GG	TCGA-17-Z013-01A-01W-0746-08	19201971	67243072	40106468	147	50558											
YLPM1	56252	broad.mit.edu	37	chr14	75249076	75249076	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttggtttggctattttattGacttaggctatttggttctc	9	5	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75249076	T	T	75249076	1	4	46	0	1	0	0	0	0	0	0	0	17613	1305	45	3		3	YLPM1	14	75249076	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	8006004	75249076	32100464	148	50559											
ZDHHC22	283576	broad.mit.edu	37	chr14	77600032	77600032	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgggagtgtctactacttAtcctgctgcttggagctctc	11	11	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77600032	T	T	77600032	3	4	46	1	0	0	0	0	1	0	0	0	17739	446	16	5	9	5	ZDHHC22	14	77600032	Missense_Mutation	SNP	A	TCGA-17-Z013-01A-01W-0746-08	2350956	77600032	29749508	149	50560											
RPS6KA5	9252	broad.mit.edu	37	chr14	91509122	91509123	+	Intron	INS	-	G	G													acatcccatcccccttctcaINSggaccatgacaccatcgtct					rs144454975	by1000genomes	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91509123	G	G	91509122	6	5	46	0	1	1	1	0	0	0	0	0	13765	203	7	0		0	RPS6KA5	14	91509122	Intron	INS	-	TCGA-17-Z013-01A-01W-0746-08	13909090	91509122	15840418	150	50561											
FAM189A1	23359	broad.mit.edu	37	chr15	29503582	29503582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccacaagcccctcccagCatgacccagcccctgttcca	6	21	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29503582	A	A	29503582	1	1	46	0	1	0	0	0	0	0	0	0	5562	725	25	3		3	FAM189A1	15	29503582	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08		29503582	73027810	151	50562											
CKMT1A	548596	broad.mit.edu	37	chr15	43989733	43989733	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgctctgttttcatctttCtctgcattcacacaggtgct	6	13	5	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43989733	A	A	43989733	1	1	46	0	1	0	0	0	0	0	0	0	3480	928	32	3		3	CKMT1A	15	43989733	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	14486151	43989733	58541659	152	50563											
KIAA0101	9768	broad.mit.edu	37	chr15	64673657	64673657	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggacccgaaaactatcccGccacagtttatattggtctc	7	12	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64673657	A	A	64673657	1	1	46	0	1	0	0	0	0	0	0	0	8225	1102	38	4		4	KIAA0101	15	64673657	5'UTR	SNP	G	TCGA-17-Z013-01A-01W-0746-08	20683924	64673657	37857735	153	50564											
NTRK3	4916	broad.mit.edu	37	chr15	88420187	88420187	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagccaagaatgtccaggtaGattggggtggccttccccaa	12	10	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88420187	T	T	88420187	2	4	46	1	0	0	0	0	0	0	0	1	10803	932	33	3		3	NTRK3	15	88420187	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08	23746530	88420187	14111205	154	50565											
ABCC1	4363	broad.mit.edu	37	chr16	16218887	16218887	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaggaacttgagaggtacGgagtttgaggagcaggtaca	17	4	0	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16218887	A	A	16218887	1	1	46	0	1	0	0	0	0	0	0	0	49	1131	39	4		4	ABCC1	16	16218887	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08		16218887	74135866	155	50566											
XYLT1	64131	broad.mit.edu	37	chr16	17333155	17333155	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgatccatccatccatcCactcatccagtccattcatc	2	18	2	1	rs139088340	by1000genomes	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17333155	T	T	17333155	1	4	46	0	1	0	0	0	0	0	0	0	17590	609	21	4		4	XYLT1	16	17333155	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	1114268	17333155	73021598	156	50567											
ABCC12	94160	broad.mit.edu	37	chr16	48143226	48143226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctcaatgtctgtcccaGgttcttccattccccaaggg	7	15	3	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48143226	T	T	48143226	1	4	46	0	1	0	0	0	0	0	0	0	52	1015	35	2		2	ABCC12	16	48143226	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	30810071	48143226	42211527	157	50568											
NCOR1	9611	broad.mit.edu	37	chr17	16068206	16068206	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcatgattccttttatgtAaagtttcaaaatatggaaaa	7	4	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16068206	T	T	16068206	1	4	46	0	1	0	0	0	0	0	0	0	10330	377	13	5		5	NCOR1	17	16068206	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08		16068206	65127004	158	50569											
MAPK7	5598	broad.mit.edu	37	chr17	19284751	19284751	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctctacagcctgtggctaGtgagcctggctgtccagatg	12	11	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19284751	A	A	19284751	3	1	46	1	0	0	0	0	1	0	0	0	9374	1029	36	4	1239	4	MAPK7	17	19284751	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	3216545	19284751	61910459	159	50570											
MYO1D	4642	broad.mit.edu	37	chr17	30969918	30969918	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgacttcctcttttcctaAttgaataccctttatttctt	2	10	2	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30969918	G	G	30969918	1	3	46	0	1	0	0	0	0	0	0	0	10165	116	4	5		5	MYO1D	17	30969918	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	11685167	30969918	50225292	160	50571											
NLE1	54475	broad.mit.edu	37	chr17	33462263	33462263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcagtacccacccctaCtcacttgcccgtcctgccat	6	18	1	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33462263	A	A	33462263	1	1	46	0	1	0	0	0	0	0	0	0	10555	580	20	3		3	NLE1	17	33462263	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	2492345	33462263	47732947	161	50572											
IGF2BP1	10642	broad.mit.edu	37	chr17	47119871	47119871	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttgatgcttttggacttcGactatcagaaatagtattta	8	5	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47119871	A	A	47119871	1	1	46	0	1	0	0	0	0	0	0	0	7643	1073	37	4		4	IGF2BP1	17	47119871	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	13657608	47119871	34075339	162	50573											
ABCA8	10351	broad.mit.edu	37	chr17	66917630	66917630	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcgtaaatgtcaaataccAgatctaggaagaaaaaaaga	7	6	2	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66917630	G	G	66917630	3	3	46	1	0	0	0	0	1	0	0	0	38	188	7	5	3348	5	ABCA8	17	66917630	Missense_Mutation	SNP	A	TCGA-17-Z013-01A-01W-0746-08	19797759	66917630	14277580	163	50574											
SRP68	6730	broad.mit.edu	37	chr17	74035838	74035838	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatccagtgaggccactcttGgtcttctgttccaacttgtc	8	12	3	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74035838	A	A	74035838	2	1	46	1	0	0	0	0	0	0	0	1	15274	1335	47	4		4	SRP68	17	74035838	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08	7118208	74035838	7159372	164	50575											
LAMA1	284217	broad.mit.edu	37	chr18	6949082	6949082	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgaaggtaaaatgtcagtAtggaaaatgctgcttacatt	9	5	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6949082	G	G	6949082	1	3	46	0	1	0	0	0	0	0	0	0	8677	464	16	5		5	LAMA1	18	6949082	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08		6949082	71128166	165	50576											
C18orf1	753	broad.mit.edu	37	chr18	13621024	13621024	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agacgtgtgtgagaggccttCagggcctgatggctggggtg	19	7	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13621024	T	T	13621024	1	4	46	0	1	0	0	0	0	0	0	0	1912	841	29	4		4	C18orf1	18	13621024	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	6671942	13621024	64456224	166	50577											
C18orf19	125228	broad.mit.edu	37	chr18	13681703	13681703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctaaatgtcttcttgaatCgttgataaagactaatagat	7	5	3	4			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13681703	A	A	13681703	3	1	46	1	0	0	0	0	1	0	0	0	1914	884	31	3	456	3	C18orf19	18	13681703	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	60679	13681703	64395545	167	50578											
C18orf8	29919	broad.mit.edu	37	chr18	21084246	21084246	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagttgaacccagggtggtgTataacagaaataatcgcttg	11	6	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21084246	C	C	21084246	1	2	46	0	1	0	0	0	0	0	0	0	1926	1653	57	5		5	C18orf8	18	21084246	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	7402543	21084246	56993002	168	50579											
DCC	1630	broad.mit.edu	37	chr18	49943142	49943142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctatgtgtgtctctgCacttgagatgggtttcctga	12	8	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49943142	A	A	49943142	1	1	46	0	1	0	0	0	0	0	0	0	4315	725	25	3		3	DCC	18	49943142	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	28858896	49943142	28134106	169	50580											
SERPINB4	6318	broad.mit.edu	37	chr18	61324514	61324515	+	Frame_Shift_Ins	INS	-	A	A													agacaataccttgtttggccINSaaaatttttcctctttagta							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61324515	A	A	61324514	7	5	46	1	0	1	1	0	0	0	0	0	14216	595	21	0		0	SERPINB4	18	61324514	Frame_Shift_Ins	INS	-	TCGA-17-Z013-01A-01W-0746-08	11381372	61324514	16752734	170	50581											
CACNA1A	773	broad.mit.edu	37	chr19	13323629	13323629	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtacccagaaggcattgcgAcatccccagtatacacacac	8	14	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13323629	T	T	13323629	1	4	46	0	1	0	0	0	0	0	0	0	2564	290	10	5		5	CACNA1A	19	13323629	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08		13323629	45805354	171	50582											
HPN	3249	broad.mit.edu	37	chr19	35540199	35540199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtctgttgcaggtggcCggactgtgccatgctgctcc	15	11	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35540199	T	T	35540199	3	4	46	1	0	0	0	0	1	0	0	0	7403	643	23	4	28	4	HPN	19	35540199	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	22216570	35540199	23588784	172	50583											
KIR2DL1	3802	broad.mit.edu	37	chr19	55286926	55286927	+	Intron	DNP	GG	AT	AT													cacaggtgaggaaagcccatGgctgtcccatgtcctatgat							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	55286927	AT	AT	55286926	1	1	46	0	1	0	0	0	0	0	0	0	8387	1363	47	4		4	KIR2DL1	19	55286926	Intron	DNP	GG	TCGA-17-Z013-01A-01W-0746-08	19746727	55286926	3842057	173	50584											
ATRN	8455	broad.mit.edu	37	chr20	3587084	3587085	+	Intron	INS	-	CT	CT													ctggtccttttctctcttcaINSctgtttcctgcatgtgggac					rs141736708	by1000genomes	TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	3587085	CT	CT	3587084	6	5	46	0	1	1	1	0	0	0	0	0	1210	174	6	0		0	ATRN	20	3587084	Intron	INS	-	TCGA-17-Z013-01A-01W-0746-08		3587084	59438436	174	50585											
ENTPD6	955	broad.mit.edu	37	chr20	25198248	25198248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaacaggcgtggggaggcGccatggggtgggtatgcagc	22	7	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25198248	T	T	25198248	1	4	46	0	1	0	0	0	0	0	0	0	5185	1102	38	3		3	ENTPD6	20	25198248	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	21611164	25198248	37827272	175	50586											
SLC32A1	140679	broad.mit.edu	37	chr20	37353388	37353388	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggccaccttgctccgcagCaagctgtccaacgtggccac	10	16	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37353388	A	A	37353388	3	1	46	1	0	0	0	0	1	0	0	0	14679	709	25	3	23	3	SLC32A1	20	37353388	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	12155140	37353388	25672132	176	50587											
PREX1	57580	broad.mit.edu	37	chr20	47324789	47324789	+	Intron	DEL	T	-	-													caggaagccccctcctgtccTgtacacacctcccagccttc							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47324789	-	-	47324789	6	5	46	0	1	1	0	1	0	0	0	0	12582	1595	55	0		0	PREX1	20	47324789	Intron	DEL	T	TCGA-17-Z013-01A-01W-0746-08	9971401	47324789	15700731	177	50588											
PCK1	5105	broad.mit.edu	37	chr20	56139562	56139562	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accttgtgcccaccccaactCgaggttctgcacccctgcca	7	19	1	0	rs149472972		TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56139562	T	T	56139562	3	4	46	1	0	0	0	0	1	0	0	0	11675	893	31	4	1237	4	PCK1	20	56139562	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	8814773	56139562	6885958	178	50589											
TAF4	6874	broad.mit.edu	37	chr20	60582735	60582735	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaattctggtgaatgagattCcacacacacttctgaatccc	6	11	2	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60582735	A	A	60582735	1	1	46	0	1	0	0	0	0	0	0	0	15645	870	30	3		3	TAF4	20	60582735	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	4443173	60582735	2442785	179	50590											
TPTE	7179	broad.mit.edu	37	chr21	10973711	10973711	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gataaataaagacacacgtaCgcataactcacctttcattc	4	11	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10973711	T	T	10973711	1	4	46	0	1	0	0	0	0	0	0	0	16554	551	19	4		4	TPTE	21	10973711	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08		10973711	37156184	180	50591											
BAGE2	85319	broad.mit.edu	37	chr21	11021235	11021235	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagcaaaatacacaaaAtacgaagttatatttttcac	3	6	1	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11021235	G	G	11021235	1	3	46	0	1	0	0	0	0	0	0	0	1297	116	4	5		5	BAGE2	21	11021235	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	47524	11021235	37108660	181	50592											
SLC5A1	6523	broad.mit.edu	37	chr22	32500780	32500780	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttctctgcagctctaccGtctgtgttggagcctgcgca	11	14	3	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32500780	A	A	32500780	3	1	46	1	0	0	0	0	1	0	0	0	14775	1145	40	4	1727	4	SLC5A1	22	32500780	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08		32500780	18803786	182	50593											
ELFN2	114794	broad.mit.edu	37	chr22	37814681	37814681	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatggccaactaccctcctCtcctgttggtcactcggatc	7	17	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37814681	A	A	37814681	1	1	46	0	1	0	0	0	0	0	0	0	5100	928	32	3		3	ELFN2	22	37814681	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	5313901	37814681	13489885	183	50594											
GLRA2	2742	broad.mit.edu	37	chrX	14740913	14740913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgagtgtaggggatcccaCcagctgacctaaaccatggc	11	11	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14740913	A	A	14740913	1	1	46	0	1	0	0	0	0	0	0	0	6519	522	18	3		3	GLRA2	23	14740913	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08		14740913	140529647	184	50595											
KLHL15	80311	broad.mit.edu	37	chrX	24006703	24006703	+	Frame_Shift_Del	DEL	C	-	-													atctctggttctgcctgctaCggcgtaaataaacttcccaa							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24006703	-	-	24006703	7	5	46	1	0	1	0	1	0	0	0	0	8442	536	19	0	668	0	KLHL15	23	24006703	Frame_Shift_Del	DEL	C	TCGA-17-Z013-01A-01W-0746-08	9265790	24006703	131263857	185	50596											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998441	27998441	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattcatagagattgtataCagtccgactttcttatcatt	7	7	3	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27998441	A	A	27998441	2	1	46	1	0	0	0	0	0	0	0	1	4310	465	17	3		3	DCAF8L1	23	27998441	Silent	SNP	C	TCGA-17-Z013-01A-01W-0746-08	3991738	27998441	127272119	186	50597											
GAGE12J	729396	broad.mit.edu	37	chrX	49217097	49217097	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggcacctgggaaggctgCggcctggcgagcgccccccc	15	18	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49217097	G	G	49217097	1	3	46	0	1	0	0	0	0	0	0	0	6249	783	27	4		4	GAGE12J	23	49217097	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	21218656	49217097	106053463	187	50598			1	47		2	2	14	N	G_C	8.566445e-05
GAGE12J	729396	broad.mit.edu	37	chrX	49217110	49217110	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgcggcctggcgagcGccccccccagcggtgtggag	17	15	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49217110	C	C	49217110	1	2	46	0	1	0	0	0	0	0	0	0	6249	1102	38	4		4	GAGE12J	23	49217110	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	13	49217110	106053450	188	50599			1	47		2	2	14	N	G_C	8.566445e-05
KDM5C	8242	broad.mit.edu	37	chrX	53239738	53239738	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaagtgagggcaccccaTaccaggtcttcggctcaccc	10	16	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53239738	C	C	53239738	3	2	46	1	0	0	0	0	1	0	0	0	8205	1406	49	5	3236	5	KDM5C	23	53239738	Missense_Mutation	SNP	T	TCGA-17-Z013-01A-01W-0746-08	4022628	53239738	102030822	189	50600											
STARD8	9754	broad.mit.edu	37	chrX	67924985	67924985	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgggactgggttggggGcaggagccccttgggggcaa	19	10	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67924985	A	A	67924985	1	1	46	0	1	0	0	0	0	0	0	0	15381	1218	42	4		4	STARD8	23	67924985	Intron	SNP	G	TCGA-17-Z013-01A-01W-0746-08	14685247	67924985	87345575	190	50601											
PJA1	64219	broad.mit.edu	37	chrX	68381557	68381557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaagaggctccaatccaCttctaggtcttcgctcacac	6	14	4	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68381557	A	A	68381557	3	1	46	1	0	0	0	0	1	0	0	0	12056	565	20	3	410	3	PJA1	23	68381557	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	456572	68381557	86889003	191	50602											
IL2RG	3561	broad.mit.edu	37	chrX	70331304	70331304	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcattcccattgggcGtcagaattgtcgtgttcagc	10	10	4	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70331304	A	A	70331304	3	1	46	1	0	0	0	0	1	0	0	0	7758	1145	40	4	1055	4	IL2RG	23	70331304	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	1949747	70331304	84939256	192	50603											
CHM	1121	broad.mit.edu	37	chrX	85233809	85233809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacatgttgaatagttttGtccttcctgctaagagcaat	7	9	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85233809	T	T	85233809	3	4	46	1	0	0	0	0	1	0	0	0	3381	1368	48	3	1756	3	CHM	23	85233809	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	14902505	85233809	70036751	193	50604											
GUCY2F	2986	broad.mit.edu	37	chrX	108652436	108652436	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgagagtcacagctgtccTgtctcaactggggaccacag	11	11	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108652436	G	G	108652436	1	3	46	0	1	0	0	0	0	0	0	0	6963	1595	55	5		5	GUCY2F	23	108652436	Intron	SNP	T	TCGA-17-Z013-01A-01W-0746-08	23418627	108652436	46618124	194	50605											
IL13RA1	3597	broad.mit.edu	37	chrX	117910274	117910274	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaactgccttgtcaatAaagatgacttgtgtaccatg	7	9	2	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117910274	G	G	117910274	1	3	46	0	1	0	0	0	0	0	0	0	7699	377	13	5		5	IL13RA1	23	117910274	Intron	SNP	A	TCGA-17-Z013-01A-01W-0746-08	9257838	117910274	37360286	195	50606											
ZDHHC9	51114	broad.mit.edu	37	chrX	128946792	128946792	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagcaaatgaggacttctaGaacagtgaggtgtggttaag	14	4	1	3			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128946792	C	C	128946792	3	2	46	1	0	0	0	0	1	0	0	0	17748	933	33	4	431	4	ZDHHC9	23	128946792	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	11036518	128946792	26323768	196	50607											
BCORL1	63035	broad.mit.edu	37	chrX	129148672	129148672	+	Frame_Shift_Del	DEL	C	-	-													tgccgaaccagcgcaagacaCcccccatgcctgtgttgacc							TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129148672	-	-	129148672	7	5	46	1	0	1	0	1	0	0	0	0	1392	507	18	0	1934	0	BCORL1	23	129148672	Frame_Shift_Del	DEL	C	TCGA-17-Z013-01A-01W-0746-08	201880	129148672	26121888	197	50608											
GPR112	139378	broad.mit.edu	37	chrX	135429458	135429458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtggtggagttgttgCcagcttggctactggcacca	15	9	0	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135429458	A	A	135429458	3	1	46	1	0	0	0	0	1	0	0	0	6694	739	26	3	3603	3	GPR112	23	135429458	Missense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	6280786	135429458	19841102	198	50609											
PASD1	139135	broad.mit.edu	37	chrX	150789453	150789453	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctgcctgatgaagagaaaGatgaagtctaccaaaagatt	9	6	2	6			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150789453	A	A	150789453	3	1	46	1	0	0	0	0	1	0	0	0	11565	942	33	4	273	4	PASD1	23	150789453	Missense_Mutation	SNP	G	TCGA-17-Z013-01A-01W-0746-08	15359995	150789453	4481107	199	50610											
GABRE	2564	broad.mit.edu	37	chrX	151124084	151124084	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctcctgacctatgtgCgacattggttaaaagactcc	8	12	1	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151124084	T	T	151124084	1	4	46	0	1	0	0	0	0	0	0	0	6230	783	27	4		4	GABRE	23	151124084	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	334631	151124084	4146476	200	50611											
MAGEA12	4111	broad.mit.edu	37	chrX	151900189	151900189	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgcgattatggccaggacGattatcaggaggcctgtctt	12	8	2	0			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151900189	A	A	151900189	2	1	46	1	0	0	0	0	0	0	0	1	9254	1048	37	4		4	MAGEA12	23	151900189	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08	776105	151900189	3370371	201	50612											
MAGEA1	4100	broad.mit.edu	37	chrX	152482654	152482654	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgtgactggctccctGgctcgatatttgaggagcag	13	10	0	2			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152482654	T	T	152482654	2	4	46	1	0	0	0	0	0	0	0	1	9251	1335	47	2		2	MAGEA1	23	152482654	Silent	SNP	G	TCGA-17-Z013-01A-01W-0746-08	582465	152482654	2787906	202	50613											
FAM58A	92002	broad.mit.edu	37	chrX	152857940	152857940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggaaagggggcacgtcCagtgtgccaagcagccacct	15	11	0	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152857940	A	A	152857940	1	1	46	0	1	0	0	0	0	0	0	0	5641	609	21	2		2	FAM58A	23	152857940	Intron	SNP	C	TCGA-17-Z013-01A-01W-0746-08	375286	152857940	2412620	203	50614											
F8	2157	broad.mit.edu	37	chrX	154159070	154159070	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagtcaacaaagcaggtcCatgagctcttttccctttaa	6	10	2	1			TCGA-17-Z013-01A-01W-0746-08	TCGA-17-Z013-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154159070	A	A	154159070	4	1	46	1	0	0	0	0	0	1	0	0	5393	603	21	2	4140	2	F8	23	154159070	Nonsense_Mutation	SNP	C	TCGA-17-Z013-01A-01W-0746-08	1301130	154159070	1111490	204	50615											
PRKCZ	5590	broad.mit.edu	37	chr1	2106259	2106259	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcctcccatgttttaaaagGatttttaaataaggtacgtt	7	6	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2106259	C	C	2106259	3	2	47	1	0	0	0	0	1	0	0	0	12623	1174	41	4	1530	4	PRKCZ	1	2106259	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08		2106259	247144362	1	50616											
CAMTA1	23261	broad.mit.edu	37	chr1	6979619	6979619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgagaccagctagctgGgtgttcccaaaccttgatga	11	10	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6979619	T	T	6979619	1	4	47	0	1	0	0	0	0	0	0	0	2639	1247	43	2		2	CAMTA1	1	6979619	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4873360	6979619	242271002	2	50617											
SPATA21	374955	broad.mit.edu	37	chr1	16727087	16727087	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctgatgtacacagttaagCccgaagtgggaaactggcct	11	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16727087	G	G	16727087	1	3	47	0	1	0	0	0	0	0	0	0	15123	754	26	4		4	SPATA21	1	16727087	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9747468	16727087	232523534	3	50618											
NBPF1	55672	broad.mit.edu	37	chr1	16893066	16893066	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctcctcagcatgagaatagGacactgtgagagatcttctt	10	9	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16893066	C	C	16893066	1	2	47	0	1	0	0	0	0	0	0	0	10286	1189	41	4		4	NBPF1	1	16893066	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	165979	16893066	232357555	4	50619											
NBPF1	55672	broad.mit.edu	37	chr1	16904391	16904391	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatttttaaatcatatctTcagttatgattttaagaatc	4	4	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16904391	C	C	16904391	1	2	47	0	1	0	0	0	0	0	0	0	10286	1798	62	5		5	NBPF1	1	16904391	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	11325	16904391	232346230	5	50620											
NBPF1	55672	broad.mit.edu	37	chr1	16908676	16908676	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatcactcactcaccgacaGttactaagaacattgccaaa	4	12	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16908676	C	C	16908676	1	2	47	0	1	0	0	0	0	0	0	0	10286	1044	36	4		4	NBPF1	1	16908676	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4285	16908676	232341945	6	50621											
AKR7A3	22977	broad.mit.edu	37	chr1	19612451	19612451	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcggccacttcccaggcTgcatagttggagaggccaag	12	12	1	1	rs139064823		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19612451	G	G	19612451	2	3	47	1	0	0	0	0	0	0	0	1	476	1567	55	5		5	AKR7A3	1	19612451	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2703775	19612451	229638170	7	50622											
PQLC2	54896	broad.mit.edu	37	chr1	19651259	19651259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagctgcccctgcaggtGggccggtacccgggcaaggt	16	14	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19651259	T	T	19651259	1	4	47	0	1	0	0	0	0	0	0	0	12520	1363	47	2		2	PQLC2	1	19651259	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	38808	19651259	229599362	8	50623											
PLA2G2D	26279	broad.mit.edu	37	chr1	20446012	20446012	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatcccagcacagagcagtgGaggcagatgctggcagtccc	14	12	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20446012	T	T	20446012	1	4	47	0	1	0	0	0	0	0	0	0	12092	1189	41	3		3	PLA2G2D	1	20446012	5'Flank	SNP	G	TCGA-17-Z014-01A-01W-0746-08	794753	20446012	228804609	9	50624											
ZCCHC17	51538	broad.mit.edu	37	chr1	31783031	31783031	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtatattcttttgtgctttGaaaacccaccatttatgtta	6	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31783031	T	T	31783031	1	4	47	0	1	0	0	0	0	0	0	0	17711	1305	45	3		3	ZCCHC17	1	31783031	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	11337019	31783031	217467590	10	50625											
COL16A1	1307	broad.mit.edu	37	chr1	32149139	32149140	+	Intron	DNP	CC	AA	AA													gctggggtcaaaggcaagtcCctgacagaagcaacagcagg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32149140	AA	AA	32149139	1	1	47	0	1	0	0	0	0	0	0	0	3705	638	22	2		2	COL16A1	1	32149139	Intron	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	366108	32149139	217101482	11	50626											
COL16A1	1307	broad.mit.edu	37	chr1	32156195	32156195	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggtcagaagaaaggatAagcggggagccttctggcca	15	8	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32156195	T	T	32156195	1	4	47	0	1	0	0	0	0	0	0	0	3705	377	13	5		5	COL16A1	1	32156195	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	7056	32156195	217094426	12	50627											
GJB5	2709	broad.mit.edu	37	chr1	35222838	35222838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggatgaaatgtgatgacAtatttctacaaagtgctcag	9	5	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35222838	G	G	35222838	1	3	47	0	1	0	0	0	0	0	0	0	6475	232	8	5		5	GJB5	1	35222838	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3066643	35222838	214027783	13	50628											
GJB4	127534	broad.mit.edu	37	chr1	35226919	35226919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtactccacagtgctgagcCgcatctggctgtctgtggtg	13	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35226919	A	A	35226919	3	1	47	1	0	0	0	0	1	0	0	0	6474	652	23	1	66	1	GJB4	1	35226919	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4081	35226919	214023702	14	50629											
THRAP3	9967	broad.mit.edu	37	chr1	36748202	36748202	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccaagtctggatctcgctCttctcgctcaagatctgcat	7	13	6	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36748202	G	G	36748202	3	3	47	1	0	0	0	0	1	0	0	0	15997	913	32	4	40	4	THRAP3	1	36748202	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1521283	36748202	212502419	15	50630											
CTPS	1503	broad.mit.edu	37	chr1	41457512	41457512	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttctgccatgttgagcctGaacaagtgagtagaaattcc	10	8	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41457512	C	C	41457512	3	2	47	1	0	0	0	0	1	0	0	0	4056	1291	45	4	737	4	CTPS	1	41457512	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4709310	41457512	207793109	16	50631											
KIAA0467	23334	broad.mit.edu	37	chr1	43894141	43894141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctcgggaacgagctatcCtagcttctgaatccaggtta	9	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43894141	A	A	43894141	3	1	47	1	0	0	0	0	1	0	0	0	8248	680	24	2	1495	2	KIAA0467	1	43894141	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2436629	43894141	205356480	17	50632											
TMEM48	55706	broad.mit.edu	37	chr1	54262454	54262454	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggtagatggagaaggatTagaaaattcagtcatttgct	12	3	2	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54262454	A	A	54262454	3	1	47	1	0	0	0	0	1	0	0	0	16295	1754	61	5	556	5	TMEM48	1	54262454	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	10368313	54262454	194988167	18	50633											
DAB1	1600	broad.mit.edu	37	chr1	57480680	57480680	+	Frame_Shift_Del	DEL	T	-	-													aagtaactggagaaggcctcTgaggtacaggtgagggaggg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57480680	-	-	57480680	7	5	47	1	0	1	0	1	0	0	0	0	4250	1567	55	0	359	0	DAB1	1	57480680	Frame_Shift_Del	DEL	T	TCGA-17-Z014-01A-01W-0746-08	3218226	57480680	191769941	19	50634											
PDE4B	5142	broad.mit.edu	37	chr1	66831345	66831345	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaaatgtgtttatttgcccGacaggctgtcttcacagatt	8	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66831345	T	T	66831345	1	4	47	0	1	0	0	0	0	0	0	0	11734	1073	37	3		3	PDE4B	1	66831345	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	9350665	66831345	182419276	20	50635											
SGIP1	84251	broad.mit.edu	37	chr1	67105479	67105479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaaagcaatggggcacCaaatggattttatgcggaaa	12	5	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67105479	A	A	67105479	3	1	47	1	0	0	0	0	1	0	0	0	14319	594	21	2	209	2	SGIP1	1	67105479	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	274134	67105479	182145142	21	50636											
LRRC7	57554	broad.mit.edu	37	chr1	70477610	70477610	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccagaattacccagagaaGtgagaaataaacttgttttc	7	7	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70477610	A	A	70477610	5	1	47	1	0	0	0	0	0	0	1	0	9107	1043	36	4	1059	4	LRRC7	1	70477610	Splice_Site	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3372131	70477610	178773011	22	50637											
LRRC7	57554	broad.mit.edu	37	chr1	70493742	70493742	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagagtttctcagccagctCaacactcactgtattgcatt	6	12	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70493742	T	T	70493742	1	4	47	0	1	0	0	0	0	0	0	0	9107	841	29	4		4	LRRC7	1	70493742	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	16132	70493742	178756879	23	50638											
LRRC7	57554	broad.mit.edu	37	chr1	70524897	70524897	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccctccctgagtgttctAggttaagtgcataatgactt	9	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70524897	G	G	70524897	1	3	47	0	1	0	0	0	0	0	0	0	9107	435	15	5		5	LRRC7	1	70524897	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	31155	70524897	178725724	24	50639											
C1orf173	127254	broad.mit.edu	37	chr1	75078352	75078352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacaaacccaaagtagCctcgtttgcctccaagcctg	6	16	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75078352	A	A	75078352	3	1	47	1	0	0	0	0	1	0	0	0	2034	739	26	3	3474	3	C1orf173	1	75078352	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4553455	75078352	174172269	25	50640											
ELTD1	64123	broad.mit.edu	37	chr1	79470911	79470911	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggaaaaaaccactaaatAaaatagagaaatacaccttt	5	6	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79470911	G	G	79470911	1	3	47	0	1	0	0	0	0	0	0	0	5126	377	13	5		5	ELTD1	1	79470911	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	4392559	79470911	169779710	26	50641											
TTLL7	79739	broad.mit.edu	37	chr1	84356272	84356272	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accagcctgggcaatatagtGagaacctgtctctacaaaac	8	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84356272	A	A	84356272	1	1	47	0	1	0	0	0	0	0	0	0	16858	1305	45	4		4	TTLL7	1	84356272	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4885361	84356272	164894349	27	50642											
TGFBR3	7049	broad.mit.edu	37	chr1	92193448	92193448	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccaagtcttcatgtttcTagtgtctggccagttgatta	8	9	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92193448	C	C	92193448	1	2	47	0	1	0	0	0	0	0	0	0	15946	1537	53	5		5	TGFBR3	1	92193448	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	7837176	92193448	157057173	28	50643											
COL11A1	1301	broad.mit.edu	37	chr1	103388843	103388843	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atactttacaaaccagtgacTgccatgcatataacacatac	4	11	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103388843	A	A	103388843	1	1	47	0	1	0	0	0	0	0	0	0	3699	1595	55	5		5	COL11A1	1	103388843	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	11195395	103388843	145861778	29	50644											
COL11A1	1301	broad.mit.edu	37	chr1	103398095	103398095	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaacattttttccttcattTcaactttggtgaatctgaca	4	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103398095	A	A	103398095	1	1	47	0	1	0	0	0	0	0	0	0	3699	1798	62	5		5	COL11A1	1	103398095	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	9252	103398095	145852526	30	50645											
NTNG1	22854	broad.mit.edu	37	chr1	107979286	107979286	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgttgtcttgtttctacaGagtgttattgtaaccctttg	9	6	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107979286	T	T	107979286	5	4	47	1	0	0	0	0	0	0	1	0	10799	956	33	3	1411	3	NTNG1	1	107979286	Splice_Site	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4581191	107979286	141271335	31	50646											
VAV3	10451	broad.mit.edu	37	chr1	108184208	108184208	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccggccaagagagatttcAtcatgggcaaacatcaacat	8	11	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108184208	G	G	108184208	1	3	47	0	1	0	0	0	0	0	0	0	17260	232	8	5		5	VAV3	1	108184208	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	204922	108184208	141066413	32	50647											
VAV3	10451	broad.mit.edu	37	chr1	108247573	108247573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgaaaaccaggactgagCaggcttacctcaggagcatc	10	11	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108247573	A	A	108247573	1	1	47	0	1	0	0	0	0	0	0	0	17260	725	25	3		3	VAV3	1	108247573	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	63365	108247573	141003048	33	50648											
KIAA1324	57535	broad.mit.edu	37	chr1	109742406	109742406	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcaagctatgagacaaCaggcttccaaccagatcttc	8	12	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109742406	T	T	109742406	1	4	47	0	1	0	0	0	0	0	0	0	8293	493	17	4		4	KIAA1324	1	109742406	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1494833	109742406	139508215	34	50649											
CELSR2	1952	broad.mit.edu	37	chr1	109794679	109794679	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccgcttctccatcaccAgccaaagtggtggtgggctg	12	12	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109794679	G	G	109794679	3	3	47	1	0	0	0	0	1	0	0	0	3252	188	7	5	1980	5	CELSR2	1	109794679	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	52273	109794679	139455942	35	50650											
CHIA	27159	broad.mit.edu	37	chr1	111854638	111854638	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaactccaagttagtgacCagttctgagttagaatctta	7	8	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111854638	G	G	111854638	1	3	47	0	1	0	0	0	0	0	0	0	3373	609	21	4		4	CHIA	1	111854638	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2059959	111854638	137395983	36	50651											
IGSF3	3321	broad.mit.edu	37	chr1	117146239	117146239	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccactgccagtcccaccgctCactcaccaagagctgtgatg	8	17	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117146239	T	T	117146239	1	4	47	0	1	0	0	0	0	0	0	0	7671	841	29	4		4	IGSF3	1	117146239	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	5291601	117146239	132104382	37	50652											
SPAG17	200162	broad.mit.edu	37	chr1	118583622	118583622	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgttcatattatttttaGaaacatctatggtgttataa	6	4	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118583622	A	A	118583622	1	1	47	0	1	0	0	0	0	0	0	0	15095	957	33	4		4	SPAG17	1	118583622	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1437383	118583622	130666999	38	50653											
ZNF697	90874	broad.mit.edu	37	chr1	120166626	120166626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgtcctcccggaggctccGggatatgctgtcagactcag	13	13	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120166626	A	A	120166626	3	1	47	1	0	0	0	0	1	0	0	0	18227	1115	39	4	1301	4	ZNF697	1	120166626	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1583004	120166626	129083995	39	50654											
NOTCH2	4853	broad.mit.edu	37	chr1	120536821	120536821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcatgggaagcaatggaaTgaagggcaatggaaggaagg	17	3	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120536821	A	A	120536821	1	1	47	0	1	0	0	0	0	0	0	0	10643	1479	51	5		5	NOTCH2	1	120536821	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	370195	120536821	128713800	40	50655											
NOTCH2	4853	broad.mit.edu	37	chr1	120558252	120558252	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcccaaggctccgactacAaacttgtaggtaccccagag	8	13	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120558252	T	T	120558252	1	4	47	0	1	0	0	0	0	0	0	0	10643	145	5	5		5	NOTCH2	1	120558252	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	21431	120558252	128692369	41	50656											
PDE4DIP	9659	broad.mit.edu	37	chr1	144938743	144938743	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaatagctgagaaagtaggGagaggaggaaatatcaaacg	13	3	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144938743	A	A	144938743	1	1	47	0	1	0	0	0	0	0	0	0	11737	1189	41	4		4	PDE4DIP	1	144938743	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	24380491	144938743	104311878	42	50657											
PDE4DIP	9659	broad.mit.edu	37	chr1	144969333	144969336	+	Intron	DEL	CAAA	-	-													aacagggacatactctgtctCaaacaaacaaacaaacaaac							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144969336	-	-	144969333	6	5	47	0	1	1	0	1	0	0	0	0	11737	841	29	0		0	PDE4DIP	1	144969333	Intron	DEL	CAAA	TCGA-17-Z014-01A-01W-0746-08	30590	144969333	104281288	43	50658											
PDE4DIP	9659	broad.mit.edu	37	chr1	144999151	144999151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctttctctagggaggtGcacgattctctcctcacctt	8	13	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144999151	T	T	144999151	1	4	47	0	1	0	0	0	0	0	0	0	11737	1334	46	3		3	PDE4DIP	1	144999151	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	29818	144999151	104251470	44	50659											
NBPF10	100132406	broad.mit.edu	37	chr1	145293914	145293914	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagatcctgcagacaaatAacatctagtctgttgttcta	6	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145293914	G	G	145293914	1	3	47	0	1	0	0	0	0	0	0	0	10287	377	13	5		5	NBPF10	1	145293914	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	294763	145293914	103956707	45	50660											
NBPF10	100132406	broad.mit.edu	37	chr1	145311578	145311578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtc	20	1	0	0	rs71726687		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145311578	T	T	145311578	1	4	47	0	1	0	0	0	0	0	0	0	10287	1392	48	3		3	NBPF10	1	145311578	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	17664	145311578	103939043	46	50661											
ITGA10	8515	broad.mit.edu	37	chr1	145528014	145528014	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagggggggcccacaatgCcccatgtgccaagggccact	14	13	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145528014	T	T	145528014	3	4	47	1	0	0	0	0	1	0	0	0	7943	739	26	4	261	4	ITGA10	1	145528014	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	216436	145528014	103722607	47	50662											
LOC200030	200030	broad.mit.edu	37	chr1	148009747	148009747	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggagaaagtgagctcagTgaattggccgggtgacacac	15	7	1	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148009747	A	A	148009747	1	1	47	0	1	0	0	0	0	0	0	0	8950	1711	59	5		5	LOC200030	1	148009747	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2481733	148009747	101240874	48	50663											
SCNM1	79005	broad.mit.edu	37	chr1	151140399	151140399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtaattctacttgaagAataacagttttaaaaactat	4	5	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151140399	T	T	151140399	1	4	47	0	1	0	0	0	0	0	0	0	14039	261	9	5		5	SCNM1	1	151140399	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3130652	151140399	98110222	49	50664											
FLG	2312	broad.mit.edu	37	chr1	152279610	152279610	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtttctggaagcagacccAgaccacctctcagagtcttc	9	13	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152279610	G	G	152279610	2	3	47	1	0	0	0	0	0	0	0	1	5979	175	7	5		5	FLG	1	152279610	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1139211	152279610	96971011	50	50665											
FLG2	388698	broad.mit.edu	37	chr1	152331134	152331134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtttgcttagagttcactGgggctgtgcactttttagct	12	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152331134	T	T	152331134	1	4	47	0	1	0	0	0	0	0	0	0	5980	1363	47	2		2	FLG2	1	152331134	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	51524	152331134	96919487	51	50666											
AQP10	89872	broad.mit.edu	37	chr1	154295973	154295973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaactgcctgtgttgcaCaaagccagatgacatggaat	9	12	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154295973	A	A	154295973	1	1	47	0	1	0	0	0	0	0	0	0	824	493	17	3		3	AQP10	1	154295973	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1964839	154295973	94954648	52	50667											
PKLR	5313	broad.mit.edu	37	chr1	155264135	155264135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgcctaggtccccccgtGccaccatgatgccgtcgctc	10	18	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155264135	T	T	155264135	3	4	47	1	0	0	0	0	1	0	0	0	12071	1319	46	3	737	3	PKLR	1	155264135	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	968162	155264135	93986486	53	50668											
SPTA1	6708	broad.mit.edu	37	chr1	158582603	158582603	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggggaagcaaccagaatcGgacctgcttcatgtcttctt	10	10	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158582603	A	A	158582603	1	1	47	0	1	0	0	0	0	0	0	0	15234	1131	39	4		4	SPTA1	1	158582603	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3318468	158582603	90668018	54	50669											
SPTA1	6708	broad.mit.edu	37	chr1	158582871	158582871	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctccaagtgcctcttccaActaagctttctgggatgaga	8	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158582871	T	T	158582871	1	4	47	0	1	0	0	0	0	0	0	0	15234	58	2	5		5	SPTA1	1	158582871	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	268	158582871	90667750	55	50670											
SPTA1	6708	broad.mit.edu	37	chr1	158584094	158584094	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcactcacacctttgatgTccctgaaagaaaaaaaaaaa	4	10	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158584094	A	A	158584094	3	1	47	1	0	0	0	0	1	0	0	0	15234	1667	58	5	484	5	SPTA1	1	158584094	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1223	158584094	90666527	56	50671											
SPTA1	6708	broad.mit.edu	37	chr1	158612912	158612912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaaatgcagtgctaaagCcagttaatttctaaggtatc	7	6	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158612912	A	A	158612912	1	1	47	0	1	0	0	0	0	0	0	0	15234	754	26	3		3	SPTA1	1	158612912	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	28818	158612912	90637709	57	50672											
SPTA1	6708	broad.mit.edu	37	chr1	158618310	158618311	+	Missense_Mutation	DNP	GG	CC	CC													ttgtctcaccttatctcccaGgggtacgaggtccctttcaa							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	158618311	CC	CC	158618310	3	2	47	1	0	0	0	0	1	0	0	0	15234	991	35	4	3664	4	SPTA1	1	158618310	Missense_Mutation	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	5398	158618310	90632311	58	50673											
SPTA1	6708	broad.mit.edu	37	chr1	158621000	158621000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacagggactatttgggCtattgtctttggcctttcct	9	8	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158621000	A	A	158621000	1	1	47	0	1	0	0	0	0	0	0	0	15234	812	28	3		3	SPTA1	1	158621000	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2690	158621000	90629621	59	50674											
FCRL6	343413	broad.mit.edu	37	chr1	159777763	159777763	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaagagggaagaggaaggaGagaagaaggaaaggaaggag	20	0	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159777763	C	C	159777763	1	2	47	0	1	0	0	0	0	0	0	0	5856	957	33	4		4	FCRL6	1	159777763	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1156763	159777763	89472858	60	50675											
VANGL2	57216	broad.mit.edu	37	chr1	160395114	160395115	+	Missense_Mutation	DNP	GG	TT	TT													aaactctccgaggaatttgtGgatcccaagtcacacaagtt							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	160395115	TT	TT	160395114	3	4	47	1	0	0	0	0	1	0	0	0	17247	1335	47	2	1538	2	VANGL2	1	160395114	Missense_Mutation	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	617351	160395114	88855507	61	50676											
CD247	919	broad.mit.edu	37	chr1	167410122	167410122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgacacggagactatatcCaatccccatgcctcagcctg	7	15	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167410122	A	A	167410122	1	1	47	0	1	0	0	0	0	0	0	0	3018	609	21	2		2	CD247	1	167410122	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	7015008	167410122	81840499	62	50677											
DPT	1805	broad.mit.edu	37	chr1	168693894	168693894	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtcttggaaagcatccCcgaggaagtgggccctgtga	16	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168693894	A	A	168693894	1	1	47	0	1	0	0	0	0	0	0	0	4779	638	22	2		2	DPT	1	168693894	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1283772	168693894	80556727	63	50678											
C1orf114	57821	broad.mit.edu	37	chr1	169366528	169366528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggaagaataaacattcCtcttgctttcttagttcttc	5	8	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169366528	A	A	169366528	3	1	47	1	0	0	0	0	1	0	0	0	2007	680	24	2	220	2	C1orf114	1	169366528	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	672634	169366528	79884093	64	50679											
F5	2153	broad.mit.edu	37	chr1	169513896	169513896	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctagtctaacatgtgacTagaagatcaaactcagaatt	6	7	4	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169513896	C	C	169513896	1	2	47	0	1	0	0	0	0	0	0	0	5391	1537	53	5		5	F5	1	169513896	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	147368	169513896	79736725	65	50680											
F5	2153	broad.mit.edu	37	chr1	169529742	169529742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcccatgacagaactccTgaccattccaacatttagtt	5	12	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169529742	A	A	169529742	1	1	47	0	1	0	0	0	0	0	0	0	5391	1595	55	5		5	F5	1	169529742	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	15846	169529742	79720879	66	50681											
C1orf112	55732	broad.mit.edu	37	chr1	169771963	169771963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgtattcttatgtaatGgcctaatgttggaattaaat	8	4	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169771963	T	T	169771963	1	4	47	0	1	0	0	0	0	0	0	0	2005	1363	47	2		2	C1orf112	1	169771963	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	242221	169771963	79478658	67	50682											
C1orf129	80133	broad.mit.edu	37	chr1	170964486	170964486	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaggttgaccgggtttagAgaaaaatgtttacatttcta	10	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170964486	G	G	170964486	1	3	47	0	1	0	0	0	0	0	0	0	2016	319	11	5		5	C1orf129	1	170964486	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1192523	170964486	78286135	68	50683											
BAT2L2	23215	broad.mit.edu	37	chr1	171493901	171493901	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttaattgcaaaaataAtgtgtgtacttatgatacag	6	3	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171493901	G	G	171493901	1	3	47	0	1	0	0	0	0	0	0	0	1326	116	4	5		5	BAT2L2	1	171493901	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	529415	171493901	77756720	69	50684											
DNM3	26052	broad.mit.edu	37	chr1	172021780	172021780	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcctgagactatattccActctctttataaagctggca	5	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172021780	T	T	172021780	1	4	47	0	1	0	0	0	0	0	0	0	4713	174	6	5		5	DNM3	1	172021780	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	527879	172021780	77228841	70	50685											
C1orf9	51430	broad.mit.edu	37	chr1	172569837	172569844	+	Intron	DEL	TGTGTGTG	-	-													gtactatgaagaaaattaaaTgtgtgtgtgtgtgtgtgtgt					rs71968558		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	172569844	-	-	172569837	6	5	47	0	1	1	0	1	0	0	0	0	2089	1479	51	0		0	C1orf9	1	172569837	Intron	DEL	TGTGTGTG	TCGA-17-Z014-01A-01W-0746-08	548057	172569837	76680784	71	50686											
RABGAP1L	9910	broad.mit.edu	37	chr1	174164755	174164758	+	Intron	DEL	CTTC	-	-													ctttctttctttctttctttCttccttccttccttccttcc					rs71878256		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	174164758	-	-	174164755	6	5	47	0	1	1	0	1	0	0	0	0	13073	928	32	0		0	RABGAP1L	1	174164755	Intron	DEL	CTTC	TCGA-17-Z014-01A-01W-0746-08	1594918	174164755	75085866	72	50687											
RABGAP1L	9910	broad.mit.edu	37	chr1	174372386	174372389	+	Intron	DEL	TATA	-	-													tgtgtgtgtgtgtgtgtgtgTatatatatgtgtataccatt					rs28735349		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	174372389	-	-	174372386	6	5	47	0	1	1	0	1	0	0	0	0	13073	1653	57	0		0	RABGAP1L	1	174372386	Intron	DEL	TATA	TCGA-17-Z014-01A-01W-0746-08	207631	174372386	74878235	73	50688											
ASTN1	460	broad.mit.edu	37	chr1	176953287	176953287	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctttgcaatttcttgggcCtcttagcattctgcaagatg	9	9	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176953287	T	T	176953287	1	4	47	0	1	0	0	0	0	0	0	0	1068	696	24	4		4	ASTN1	1	176953287	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2580901	176953287	72297334	74	50689											
MR1	3140	broad.mit.edu	37	chr1	181018211	181018211	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcactctctgagatattttCgcctgggcgtttcggatccc	10	13	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181018211	T	T	181018211	3	4	47	1	0	0	0	0	1	0	0	0	9846	884	31	4	97	4	MR1	1	181018211	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4064924	181018211	68232410	75	50690											
CACNA1E	777	broad.mit.edu	37	chr1	181546994	181546994	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcggcctttgaagctcgtgtCagggatacctagtgagcatc	13	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181546994	A	A	181546994	4	1	47	1	0	0	0	0	0	1	0	0	2568	838	29	3	619	3	CACNA1E	1	181546994	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	528783	181546994	67703627	76	50691											
CACNA1E	777	broad.mit.edu	37	chr1	181705572	181705572	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcagcaccaccaacccgTaagccaccctcgcgttgctc	6	19	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181705572	A	A	181705572	5	1	47	1	0	0	0	0	0	0	1	0	2568	1652	57	5	3510	5	CACNA1E	1	181705572	Splice_Site	SNP	T	TCGA-17-Z014-01A-01W-0746-08	158578	181705572	67545049	77	50692											
CACNA1E	777	broad.mit.edu	37	chr1	181754790	181754790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgttaattttattttccCcacagcaaactccgtagtca	4	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181754790	A	A	181754790	1	1	47	0	1	0	0	0	0	0	0	0	2568	638	22	2		2	CACNA1E	1	181754790	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	49218	181754790	67495831	78	50693											
GLT25D2	23127	broad.mit.edu	37	chr1	183924132	183924132	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgagtagccacacaggaaCcctgctggtcagggcactgg	13	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183924132	T	T	183924132	1	4	47	0	1	0	0	0	0	0	0	0	6531	522	18	4		4	GLT25D2	1	183924132	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2169342	183924132	65326489	79	50694											
FAM129A	116496	broad.mit.edu	37	chr1	184797944	184797944	+	Intron	DEL	T	-	-													ttctgagagaagcaaaaccaTtttttttttttttgagacag					rs11361571		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	184797944	-	-	184797944	6	5	47	0	1	1	0	1	0	0	0	0	5482	1508	52	0		0	FAM129A	1	184797944	Intron	DEL	T	TCGA-17-Z014-01A-01W-0746-08	873812	184797944	64452677	80	50695											
HMCN1	83872	broad.mit.edu	37	chr1	185959617	185959617	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaacacatgaaaacataatCaacctcttgggacagatggc	8	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185959617	A	A	185959617	1	1	47	0	1	0	0	0	0	0	0	0	7287	841	29	3		3	HMCN1	1	185959617	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1161673	185959617	63291004	81	50696											
HMCN1	83872	broad.mit.edu	37	chr1	186062355	186062355	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttgctactaatcccgctgGagaagaagaccgaattttta	9	8	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186062355	C	C	186062355	3	2	47	1	0	0	0	0	1	0	0	0	7287	1174	41	4	10235	4	HMCN1	1	186062355	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	102738	186062355	63188266	82	50697											
HMCN1	83872	broad.mit.edu	37	chr1	186077690	186077690	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtcagatgcagtgcccccAcctgtaattacttggctcag	9	12	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186077690	T	T	186077690	2	4	47	1	0	0	0	0	0	0	0	1	7287	146	6	5		5	HMCN1	1	186077690	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	15335	186077690	63172931	83	50698											
RGS18	64407	broad.mit.edu	37	chr1	192127712	192127712	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtatggaatagtattaaTaaatgaactagggaaggatg	11	1	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192127712	C	C	192127712	1	2	47	0	1	0	0	0	0	0	0	0	13409	1421	49	5		5	RGS18	1	192127712	5'UTR	SNP	T	TCGA-17-Z014-01A-01W-0746-08	6050022	192127712	57122909	84	50699											
CFH	3075	broad.mit.edu	37	chr1	196684731	196684731	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttatgcactagaatcttgtGatatcccagtatttatgaat	6	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196684731	C	C	196684731	3	2	47	1	0	0	0	0	1	0	0	0	3313	1290	45	4	1588	4	CFH	1	196684731	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4557019	196684731	52565890	85	50700											
ASPM	259266	broad.mit.edu	37	chr1	197071122	197071122	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcttctcctcaccagtaatGatctaaacctactctgaata	3	12	5	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197071122	A	A	197071122	3	1	47	1	0	0	0	0	1	0	0	0	1060	1294	45	4	3218	4	ASPM	1	197071122	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	386391	197071122	52179499	86	50701											
PTPRC	5788	broad.mit.edu	37	chr1	198675924	198675924	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaactaaattatttacAgcaaagctaaatgttaatga	6	4	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198675924	T	T	198675924	2	4	47	1	0	0	0	0	0	0	0	1	12905	175	7	5		5	PTPRC	1	198675924	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1604802	198675924	50574697	87	50702											
PTPRC	5788	broad.mit.edu	37	chr1	198710986	198710986	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatctcaaagaaaatattaTctcttgactagaaaaaagaa	4	6	3	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198710986	A	A	198710986	1	1	47	0	1	0	0	0	0	0	0	0	12905	1450	50	5		5	PTPRC	1	198710986	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	35062	198710986	50539635	88	50703											
LAX1	54900	broad.mit.edu	37	chr1	203743159	203743159	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagagcttccagagactgcGcaagcatttcttcagaggat	10	10	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203743159	A	A	203743159	3	1	47	1	0	0	0	0	1	0	0	0	8720	1087	38	4	610	4	LAX1	1	203743159	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5032173	203743159	45507462	89	50704											
NFASC	23114	broad.mit.edu	37	chr1	204915743	204915743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgagggggcaggtcctGgcactctatggccgaggcca	18	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204915743	T	T	204915743	1	4	47	0	1	0	0	0	0	0	0	0	10454	1363	47	2		2	NFASC	1	204915743	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1172584	204915743	44334878	90	50705											
IKBKE	9641	broad.mit.edu	37	chr1	206648289	206648289	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctggagagccctgagaatGcctttgggctgcctgaggat	15	9	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206648289	A	A	206648289	3	1	47	1	0	0	0	0	1	0	0	0	7682	1319	46	4	320	4	IKBKE	1	206648289	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1732546	206648289	42602332	91	50706											
C1orf107	27042	broad.mit.edu	37	chr1	210010463	210010463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcctcaaagccaatgcCcaggtgcttggcaacaatag	8	13	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210010463	A	A	210010463	2	1	47	1	0	0	0	0	0	0	0	1	2001	610	22	2		2	C1orf107	1	210010463	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3362174	210010463	39240158	92	50707											
INTS7	25896	broad.mit.edu	37	chr1	212126071	212126071	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaggtcaatattcattaatCcatcaaaatagcatggctat	5	7	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212126071	G	G	212126071	1	3	47	0	1	0	0	0	0	0	0	0	7853	870	30	4		4	INTS7	1	212126071	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2115608	212126071	37124550	93	50708											
NENF	29937	broad.mit.edu	37	chr1	212619001	212619002	+	Intron	INS	-	C	C													tataccctcccacccccacgINSccccccccacagcagtgtct							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212619002	C	C	212619001	6	5	47	0	1	1	1	0	0	0	0	0	10430	1102	38	0		0	NENF	1	212619001	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	492930	212619001	36631620	94	50709											
CENPF	1063	broad.mit.edu	37	chr1	214819597	214819597	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaggtcagttgtcagaActagacaagttactctcttc	7	9	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214819597	G	G	214819597	2	3	47	1	0	0	0	0	0	0	0	1	3261	40	2	5		5	CENPF	1	214819597	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2200596	214819597	34431024	95	50710											
KCNK2	3776	broad.mit.edu	37	chr1	215342563	215342563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggaaacatctcaccacGcacagaaggcggcaaaatat	8	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215342563	T	T	215342563	3	4	47	1	0	0	0	0	1	0	0	0	8136	1087	38	3	554	3	KCNK2	1	215342563	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	522966	215342563	33908058	96	50711											
USH2A	7399	broad.mit.edu	37	chr1	216138948	216138948	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgacagtagcatcttgtatGaatacctcattttgtcagca	7	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216138948	A	A	216138948	1	1	47	0	1	0	0	0	0	0	0	0	17162	1305	45	4		4	USH2A	1	216138948	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	796385	216138948	33111673	97	50712											
USH2A	7399	broad.mit.edu	37	chr1	216464504	216464504	+	Intron	DEL	A	-	-													cttgaccttagataaaagccAaaggctttatcatggctcca					rs76594975		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216464504	-	-	216464504	6	5	47	0	1	1	0	1	0	0	0	0	17162	145	5	0		0	USH2A	1	216464504	Intron	DEL	A	TCGA-17-Z014-01A-01W-0746-08	325556	216464504	32786117	98	50713											
USH2A	7399	broad.mit.edu	37	chr1	216595416	216595416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgaagatctgtatgggCaatcctgaatacaaaaccgc	11	8	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216595416	A	A	216595416	3	1	47	1	0	0	0	0	1	0	0	0	17162	710	25	3	15643	3	USH2A	1	216595416	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	130912	216595416	32655205	99	50714											
SLC30A10	55532	broad.mit.edu	37	chr1	219907557	219907558	+	Intron	INS	-	A	A													gtcacctaagagcctttaccINSaaaaaaaaaaaagtttgagc					rs5781138		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219907558	A	A	219907557	6	5	47	0	1	1	1	0	0	0	0	0	14668	609	21	0		0	SLC30A10	1	219907557	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	3312141	219907557	29343064	100	50715											
CDC42BPA	8476	broad.mit.edu	37	chr1	227333438	227333438	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggctggaaactgaaacctctCctaaacagagaaaaacagaa	8	9	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227333438	G	G	227333438	3	3	47	1	0	0	0	0	1	0	0	0	3102	869	30	4	4380	4	CDC42BPA	1	227333438	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	7425881	227333438	21917183	101	50716											
ZNF678	339500	broad.mit.edu	37	chr1	227828712	227828712	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaccaacgttggattttcaGaccggagaaatcaagagagg	13	7	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227828712	T	T	227828712	1	4	47	0	1	0	0	0	0	0	0	0	18212	957	33	3		3	ZNF678	1	227828712	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	495274	227828712	21421909	102	50717											
ACTA1	58	broad.mit.edu	37	chr1	229567684	229567684	+	Intron	DEL	C	-	-													ggggagcgtgagcagaagctCggggcgccgggggccggcgg					rs59228224		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	229567684	-	-	229567684	6	5	47	0	1	1	0	1	0	0	0	0	191	899	31	0		0	ACTA1	1	229567684	Intron	DEL	C	TCGA-17-Z014-01A-01W-0746-08	1738972	229567684	19682937	103	50718											
FAM89A	375061	broad.mit.edu	37	chr1	231155894	231155894	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgagggaaggggtggggagGtaaaaaacgagaagtcagca	18	3	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231155894	C	C	231155894	1	2	47	0	1	0	0	0	0	0	0	0	5700	1276	44	4		4	FAM89A	1	231155894	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1588210	231155894	18094727	104	50719											
SLC35F3	148641	broad.mit.edu	37	chr1	234271791	234271791	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaacaactgtttatagatAtgaaaggtgaagaatatgaa	8	2	0	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234271791	G	G	234271791	1	3	47	0	1	0	0	0	0	0	0	0	14704	464	16	5		5	SLC35F3	1	234271791	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3115897	234271791	14978830	105	50720											
RBM34	23029	broad.mit.edu	37	chr1	235295246	235295246	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattaacagaacgcatgaCtctgagttttctccccatga	6	10	2	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235295246	T	T	235295246	3	4	47	1	0	0	0	0	1	0	0	0	13239	565	20	4	221	4	RBM34	1	235295246	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1023455	235295246	13955375	106	50721											
ACTN2	88	broad.mit.edu	37	chr1	236881130	236881130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaatccgatggacctgtGctaaaccgtgtttggttttc	10	9	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236881130	T	T	236881130	1	4	47	0	1	0	0	0	0	0	0	0	205	1334	46	3		3	ACTN2	1	236881130	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1585884	236881130	12369491	107	50722											
ACTN2	88	broad.mit.edu	37	chr1	236917046	236917046	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcactagatggcagtcaaAgctaaatcaagctcatcctg	9	10	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236917046	G	G	236917046	1	3	47	0	1	0	0	0	0	0	0	0	205	87	3	5		5	ACTN2	1	236917046	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	35916	236917046	12333575	108	50723											
RYR2	6262	broad.mit.edu	37	chr1	237753741	237753741	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaattataagataaatttccGaaaccgtctttagaaacaga	6	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237753741	T	T	237753741	1	4	47	0	1	0	0	0	0	0	0	0	13880	1073	37	3		3	RYR2	1	237753741	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	836695	237753741	11496880	109	50724											
RYR2	6262	broad.mit.edu	37	chr1	237947067	237947067	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattctcaaattttttgacAtgttcttaaaactaaaggat	5	5	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947067	T	T	237947067	3	4	47	1	0	0	0	0	1	0	0	0	13880	217	8	5	12413	5	RYR2	1	237947067	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	193326	237947067	11303554	110	50725											
FMN2	56776	broad.mit.edu	37	chr1	240306045	240306045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggaagaaactcctcagtGgccaattctgcccgttcccc	8	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240306045	T	T	240306045	1	4	47	0	1	0	0	0	0	0	0	0	6008	1363	47	2		2	FMN2	1	240306045	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2358978	240306045	8944576	111	50726											
FMN2	56776	broad.mit.edu	37	chr1	240409095	240409095	+	Intron	DEL	G	-	-													gtccagagattcattccccaGgccttctgttgcttcaccct							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	240409095	-	-	240409095	6	5	47	0	1	1	0	1	0	0	0	0	6008	1015	35	0		0	FMN2	1	240409095	Intron	DEL	G	TCGA-17-Z014-01A-01W-0746-08	103050	240409095	8841526	112	50727											
FH	2271	broad.mit.edu	37	chr1	241663636	241663636	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactaaaaccatattcaaaaGaaatttgctgttctcaaaca	3	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241663636	T	T	241663636	1	4	47	0	1	0	0	0	0	0	0	0	5932	957	33	3		3	FH	1	241663636	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1254541	241663636	7586985	113	50728											
PLD5	200150	broad.mit.edu	37	chr1	242352883	242352884	+	Intron	DEL	AA	-	-													cacatagggccatactattgAacaagaaagagaaaatcact					rs140738159		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	242352884	-	-	242352883	6	5	47	0	1	1	0	1	0	0	0	0	12144	261	9	0		0	PLD5	1	242352883	Intron	DEL	AA	TCGA-17-Z014-01A-01W-0746-08	689247	242352883	6897738	114	50729											
C1orf101	257044	broad.mit.edu	37	chr1	244769278	244769278	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaaaaatagaagttgtcaCataagacagacataaagggg	10	4	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	244769278	G	G	244769278	1	3	47	0	1	0	0	0	0	0	0	0	1996	493	17	4		4	C1orf101	1	244769278	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2416395	244769278	4481343	115	50730											
KIF26B	55083	broad.mit.edu	37	chr1	245820444	245820444	+	Intron	DEL	G	-	-													gatgagatcaatgaaaatttGgggggcatttctagatttgg					rs34852394		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	245820444	-	-	245820444	6	5	47	0	1	1	0	1	0	0	0	0	8365	1363	47	0		0	KIF26B	1	245820444	Intron	DEL	G	TCGA-17-Z014-01A-01W-0746-08	1051166	245820444	3430177	116	50731											
OR2L2	26246	broad.mit.edu	37	chr1	248202413	248202413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctacaccatcctcaccCcaatgctcaaccccatcatc	1	19	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248202413	A	A	248202413	3	1	47	1	0	0	0	0	1	0	0	0	11101	623	22	2	846	2	OR2L2	1	248202413	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2381969	248202413	1048208	117	50732											
OR2T27	403239	broad.mit.edu	37	chr1	248814014	248814014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagcaggaagtacatggGggtgtggaggcgggagtcta	20	5	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248814014	T	T	248814014	3	4	47	1	0	0	0	0	1	0	0	0	11115	1232	43	2	784	2	OR2T27	1	248814014	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	611601	248814014	436607	118	50733											
TSSC1	7260	broad.mit.edu	37	chr2	3341646	3341646	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatctactcacaatatcaTggcttctctgtgcatgcaac	5	12	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3341646	C	C	3341646	1	2	47	0	1	0	0	0	0	0	0	0	16791	1479	51	5		5	TSSC1	2	3341646	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08		3341646	239857727	119	50734											
SOX11	6664	broad.mit.edu	37	chr2	5833048	5833048	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtccaagatcgaacgcagGaagatcatggagcagtctcc	12	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5833048	A	A	5833048	2	1	47	1	0	0	0	0	0	0	0	1	15056	1165	41	4		4	SOX11	2	5833048	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2491402	5833048	237366325	120	50735											
GRHL1	29841	broad.mit.edu	37	chr2	10102667	10102667	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacagtgtttctgggtaataGatgtcttttaatttgatttt	9	3	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10102667	C	C	10102667	1	2	47	0	1	0	0	0	0	0	0	0	6829	957	33	4		4	GRHL1	2	10102667	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4269619	10102667	233096706	121	50736											
NT5C1B	93034	broad.mit.edu	37	chr2	18766374	18766374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcagctccttaagtaggGcttaagggactcggacattt	10	9	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18766374	T	T	18766374	1	4	47	0	1	0	0	0	0	0	0	0	10781	1218	42	3		3	NT5C1B	2	18766374	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	8663707	18766374	224432999	122	50737											
CIB4	130106	broad.mit.edu	37	chr2	26852375	26852375	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaaggtgtcatggatgCtgaaaagagaggcatgaaga	15	4	2	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26852375	T	T	26852375	5	4	47	1	0	0	0	0	0	0	1	0	3454	811	28	4	488	4	CIB4	2	26852375	Splice_Site	SNP	C	TCGA-17-Z014-01A-01W-0746-08	8086001	26852375	216346998	123	50738											
SLC5A6	8884	broad.mit.edu	37	chr2	27423517	27423517	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttgacaggattcacacaAaaaaggtccccgccagaagg	10	11	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27423517	G	G	27423517	1	3	47	0	1	0	0	0	0	0	0	0	14783	29	1	5		5	SLC5A6	2	27423517	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	571142	27423517	215775856	124	50739											
GCKR	2646	broad.mit.edu	37	chr2	27746241	27746241	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaggctgtcaggagtgctCttgctgggccaggtcagaag	17	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27746241	A	A	27746241	3	1	47	1	0	0	0	0	1	0	0	0	6356	913	32	3	1887	3	GCKR	2	27746241	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	322724	27746241	215453132	125	50740											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27889984	27889984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccttgtgatccacctgCcttggcctcccaaagtgctg	9	15	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27889984	A	A	27889984	1	1	47	0	1	0	0	0	0	0	0	0	14767	754	26	3		3	SLC4A1AP	2	27889984	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	143743	27889984	215309389	126	50741											
ALK	238	broad.mit.edu	37	chr2	30076389	30076389	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaccacccagttccgccaCcttcattgctcatctggtct	5	17	5	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30076389	T	T	30076389	1	4	47	0	1	0	0	0	0	0	0	0	525	522	18	4		4	ALK	2	30076389	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2186405	30076389	213122984	127	50742											
GALNT14	79623	broad.mit.edu	37	chr2	31178601	31178601	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgaatccgggaccggacCagacctgcagtcaggaacaa	11	15	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31178601	T	T	31178601	2	4	47	1	0	0	0	0	0	0	0	1	6274	581	21	4		4	GALNT14	2	31178601	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1102212	31178601	212020772	128	50743											
RASGRP3	25780	broad.mit.edu	37	chr2	33749220	33749220	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgttcacagtataagggcatCggacaactaaactactcgct	8	11	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33749220	T	T	33749220	1	4	47	0	1	0	0	0	0	0	0	0	13184	899	31	4		4	RASGRP3	2	33749220	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2570619	33749220	209450153	129	50744											
FAM98A	25940	broad.mit.edu	37	chr2	33827100	33827100	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggggctggcagaccaGcggtaagcatggcatatcag	17	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33827100	T	T	33827100	1	4	47	0	1	0	0	0	0	0	0	0	5713	986	34	3		3	FAM98A	2	33827100	5'Flank	SNP	G	TCGA-17-Z014-01A-01W-0746-08	77880	33827100	209372273	130	50745											
CRIM1	51232	broad.mit.edu	37	chr2	36666283	36666283	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccatgaagtggtattctatCcaacaggaaaattaagtgta	9	6	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36666283	G	G	36666283	1	3	47	0	1	0	0	0	0	0	0	0	3905	870	30	4		4	CRIM1	2	36666283	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2839183	36666283	206533090	131	50746											
HEATR5B	54497	broad.mit.edu	37	chr2	37297272	37297272	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctggtctcaaactcctgAcctcaggcaatctgcccgcc	9	16	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37297272	T	T	37297272	1	4	47	0	1	0	0	0	0	0	0	0	7099	290	10	5		5	HEATR5B	2	37297272	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	630989	37297272	205902101	132	50747											
PRKD3	23683	broad.mit.edu	37	chr2	37516516	37516516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctcttcactgggaagggCtacatattcaggctgtaggg	12	9	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37516516	A	A	37516516	3	1	47	1	0	0	0	0	1	0	0	0	12626	797	28	3	2032	3	PRKD3	2	37516516	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	219244	37516516	205682857	133	50748											
DHX57	90957	broad.mit.edu	37	chr2	39038419	39038419	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatctggggggccagcgagTagcaggcgagctcaaaccag	15	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39038419	A	A	39038419	1	1	47	0	1	0	0	0	0	0	0	0	4553	1653	57	5		5	DHX57	2	39038419	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1521903	39038419	204160954	134	50749											
MAP4K3	8491	broad.mit.edu	37	chr2	39514070	39514070	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacataatgagccatctcGttcaccatttaactggaagg	8	9	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39514070	A	A	39514070	4	1	47	1	0	0	0	0	0	1	0	0	9353	1153	40	4	1230	4	MAP4K3	2	39514070	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	475651	39514070	203685303	135	50750											
FSHR	2492	broad.mit.edu	37	chr2	49345763	49345763	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gataagaccctgaaaaccagGatgtgggtcacattggccaa	11	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49345763	C	C	49345763	1	2	47	0	1	0	0	0	0	0	0	0	6133	1189	41	4		4	FSHR	2	49345763	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	9831693	49345763	193853610	136	50751											
NRXN1	9378	broad.mit.edu	37	chr2	50966336	50966336	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttatgattatggattttctGacagtacagtagaaatcgac	8	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50966336	T	T	50966336	1	4	47	0	1	0	0	0	0	0	0	0	10760	1305	45	3		3	NRXN1	2	50966336	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1620573	50966336	192233037	137	50752											
ACYP2	98	broad.mit.edu	37	chr2	54494559	54494559	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatcctaaagtaaggggtgGgaacagaaggagggagaagg	17	4	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54494559	C	C	54494559	1	2	47	0	1	0	0	0	0	0	0	0	229	1247	43	4		4	ACYP2	2	54494559	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3528223	54494559	188704814	138	50753											
SMEK2	57223	broad.mit.edu	37	chr2	55825506	55825506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgaactattaagggaaCtaaatatctgaaaaatggaa	8	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55825506	A	A	55825506	1	1	47	0	1	0	0	0	0	0	0	0	14908	580	20	3		3	SMEK2	2	55825506	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1330947	55825506	187373867	139	50754											
AFTPH	54812	broad.mit.edu	37	chr2	64800103	64800103	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttagagcccaccaaggaAccactgaaaccactttctgc	7	13	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64800103	G	G	64800103	2	3	47	1	0	0	0	0	0	0	0	1	364	40	2	5		5	AFTPH	2	64800103	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	8974597	64800103	178399270	140	50755											
WDR92	116143	broad.mit.edu	37	chr2	68364642	68364642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttatactaagtaaaacagCtttaaaatggtcagataatg	6	4	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68364642	A	A	68364642	1	1	47	0	1	0	0	0	0	0	0	0	17466	812	28	3		3	WDR92	2	68364642	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3564539	68364642	174834731	141	50756											
ANXA4	307	broad.mit.edu	37	chr2	70043264	70043264	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggagagaagaaatgggGgacagatgaggtgaaatttc	17	3	0	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70043264	A	A	70043264	3	1	47	1	0	0	0	0	1	0	0	0	720	1232	43	4	596	4	ANXA4	2	70043264	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1678622	70043264	173156109	142	50757											
TGFA	7039	broad.mit.edu	37	chr2	70742093	70742093	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagagtctgcttggcaaaTgatgtcctcagacgcttaga	11	9	3	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70742093	C	C	70742093	1	2	47	0	1	0	0	0	0	0	0	0	15938	1479	51	5		5	TGFA	2	70742093	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	698829	70742093	172457280	143	50758											
CD207	50489	broad.mit.edu	37	chr2	71062578	71062578	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgaagggagccggctggcCacagagaggggctaagccca	16	11	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71062578	G	G	71062578	1	3	47	0	1	0	0	0	0	0	0	0	3013	609	21	4		4	CD207	2	71062578	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	320485	71062578	172136795	144	50759											
DCTN1	1639	broad.mit.edu	37	chr2	74594678	74594678	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccaaagccctcaagcagcTgcatcatatggagagttcat	8	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74594678	A	A	74594678	1	1	47	0	1	0	0	0	0	0	0	0	4339	1595	55	5		5	DCTN1	2	74594678	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3532100	74594678	168604695	145	50760											
LRRTM4	80059	broad.mit.edu	37	chr2	77748756	77748756	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggataggaagccaagaggatCagctttgctcagaaggaaac	13	7	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77748756	A	A	77748756	1	1	47	0	1	0	0	0	0	0	0	0	9129	841	29	3		3	LRRTM4	2	77748756	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3154078	77748756	165450617	146	50761											
REG3G	130120	broad.mit.edu	37	chr2	79255168	79255168	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgcagtgtttatgtgcctTctcccgtctcctctcatctc	6	14	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79255168	A	A	79255168	1	1	47	0	1	0	0	0	0	0	0	0	13321	1798	62	5		5	REG3G	2	79255168	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1506412	79255168	163944205	147	50762											
REG1A	5967	broad.mit.edu	37	chr2	79349086	79349086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcacaacttcctcctccaCtgagtgctccattttcttct	4	16	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79349086	A	A	79349086	1	1	47	0	1	0	0	0	0	0	0	0	13318	580	20	3		3	REG1A	2	79349086	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	93918	79349086	163850287	148	50763											
CTNNA2	1496	broad.mit.edu	37	chr2	79647102	79647102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagctttcatcttgaactcTgacttgacttctcatctttc	5	12	5	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79647102	A	A	79647102	1	1	47	0	1	0	0	0	0	0	0	0	4047	1595	55	5		5	CTNNA2	2	79647102	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	298016	79647102	163552271	149	50764											
GGCX	2677	broad.mit.edu	37	chr2	85777883	85777883	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccctgtttctgcccggaAgacagaaaaaagaggaatca	11	9	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85777883	G	G	85777883	1	3	47	0	1	0	0	0	0	0	0	0	6420	87	3	5		5	GGCX	2	85777883	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	6130781	85777883	157421490	150	50765											
SFTPB	6439	broad.mit.edu	37	chr2	85892885	85892885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctgccgggatttgcaCaggcccaggtgcatacagat	13	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85892885	A	A	85892885	2	1	47	1	0	0	0	0	0	0	0	1	14304	465	17	3		3	SFTPB	2	85892885	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	115002	85892885	157306488	151	50766											
RNF103	7844	broad.mit.edu	37	chr2	86847581	86847582	+	Nonsense_Mutation	DNP	CC	AA	AA													agcagaatagagctcaccctCcatcaagtcacctgaagaaa							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	86847582	AA	AA	86847581	4	1	47	1	0	0	0	0	0	1	0	0	13534	864	30	3	1831	3	RNF103	2	86847581	Nonsense_Mutation	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	954696	86847581	156351792	152	50767											
SMYD1	150572	broad.mit.edu	37	chr2	88384128	88384128	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaagtcaggaaacagcCtcaaagactggatatggtca	11	8	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88384128	G	G	88384128	1	3	47	0	1	0	0	0	0	0	0	0	14935	696	24	4		4	SMYD1	2	88384128	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1536547	88384128	154815245	153	50768											
ASTL	431705	broad.mit.edu	37	chr2	96795731	96795731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgagcctggaacccagcgGgagacccctgagtccagatc	14	14	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96795731	A	A	96795731	1	1	47	0	1	0	0	0	0	0	0	0	1067	1247	43	4		4	ASTL	2	96795731	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	8411603	96795731	146403642	154	50769											
CNNM4	26504	broad.mit.edu	37	chr2	97474331	97474331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccccaccccactcagccGctcagcctccctcagttacc	4	23	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97474331	T	T	97474331	3	4	47	1	0	0	0	0	1	0	0	0	3647	1087	38	3	2004	3	CNNM4	2	97474331	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	678600	97474331	145725042	155	50770											
MAP4K4	9448	broad.mit.edu	37	chr2	102413810	102413810	+	Intron	DEL	G	-	-													cctgtgctttgcatgactctGgcagacttaccacaggatca							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102413810	-	-	102413810	6	5	47	0	1	1	0	1	0	0	0	0	9354	1363	47	0		0	MAP4K4	2	102413810	Intron	DEL	G	TCGA-17-Z014-01A-01W-0746-08	4939479	102413810	140785563	156	50771											
ANAPC1	64682	broad.mit.edu	37	chr2	112590696	112590696	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggcactgcccctgacttaGaagctaatggtaagaaatac	9	9	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112590696	A	A	112590696	1	1	47	0	1	0	0	0	0	0	0	0	598	957	33	4		4	ANAPC1	2	112590696	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	10176886	112590696	130608677	157	50772											
GLI2	2736	broad.mit.edu	37	chr2	121742339	121742339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagcggagctgggcagcCcagccacgcaaggcgactcc	15	14	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121742339	A	A	121742339	1	1	47	0	1	0	0	0	0	0	0	0	6502	638	22	2		2	GLI2	2	121742339	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9151643	121742339	121457034	158	50773											
CLASP1	23332	broad.mit.edu	37	chr2	122205692	122205692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccctgacaaagcggagCtctgctggagagtcagggca	16	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122205692	A	A	122205692	1	1	47	0	1	0	0	0	0	0	0	0	3485	812	28	3		3	CLASP1	2	122205692	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	463353	122205692	120993681	159	50774											
CNTNAP5	129684	broad.mit.edu	37	chr2	125623021	125623021	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttaccattcaggtaccttCcttactttctcctgcttcag	5	14	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125623021	T	T	125623021	1	4	47	0	1	0	0	0	0	0	0	0	3682	870	30	4		4	CNTNAP5	2	125623021	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3417329	125623021	117576352	160	50775											
ERCC3	2071	broad.mit.edu	37	chr2	128016978	128016978	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgttgctcttcttttgtcGaaaacgccaagtcttcctcc	7	13	3	0	rs4150521	byFrequency	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128016978	A	A	128016978	3	1	47	1	0	0	0	0	1	0	0	0	5256	1059	37	4	245	4	ERCC3	2	128016978	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2393957	128016978	115182395	161	50776											
GPR17	2840	broad.mit.edu	37	chr2	128408864	128408864	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtctgcctgcagctgtaCcgggagaaggcctcccacca	13	14	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128408864	A	A	128408864	4	1	47	1	0	0	0	0	0	1	0	0	6732	518	18	3	645	3	GPR17	2	128408864	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	391886	128408864	114790509	162	50777											
CCDC115	84317	broad.mit.edu	37	chr2	131098596	131098596	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggggtcttagtggggccCttgcgcctccgcagacctga	14	13	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131098596	G	G	131098596	3	3	47	1	0	0	0	0	1	0	0	0	2778	680	24	4	235	4	CCDC115	2	131098596	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2689732	131098596	112100777	163	50778											
ARHGEF4	50649	broad.mit.edu	37	chr2	131785526	131785526	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctccttccagccatgcctGatggagctctggacacagct	9	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131785526	A	A	131785526	3	1	47	1	0	0	0	0	1	0	0	0	910	1290	45	4	446	4	ARHGEF4	2	131785526	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	686930	131785526	111413847	164	50779											
NCKAP5	344148	broad.mit.edu	37	chr2	133635593	133635593	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgactaaagaagtgatttCatttaaataacaactgcaat	6	5	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133635593	T	T	133635593	1	4	47	0	1	0	0	0	0	0	0	0	10318	841	29	4		4	NCKAP5	2	133635593	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1850067	133635593	109563780	165	50780											
LCT	3938	broad.mit.edu	37	chr2	136558283	136558283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacgccaccttgactggcgCggtacacatcgttgtacaga	10	13	1	2	rs146614143	byFrequency	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136558283	A	A	136558283	3	1	47	1	0	0	0	0	1	0	0	0	8765	768	27	3	1047	3	LCT	2	136558283	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2922690	136558283	106641090	166	50781											
LCT	3938	broad.mit.edu	37	chr2	136566189	136566189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagctctgttcattgccGtggaaggccacgaagggtcc	14	12	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136566189	T	T	136566189	3	4	47	1	0	0	0	0	1	0	0	0	8765	1145	40	3	2095	3	LCT	2	136566189	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	7906	136566189	106633184	167	50782											
LRP1B	53353	broad.mit.edu	37	chr2	141116333	141116333	+	Intron	DEL	A	-	-													ttttaaaatgtttgtactccAagtcatcagagaacctcata							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141116333	-	-	141116333	6	5	47	0	1	1	0	1	0	0	0	0	9042	145	5	0		0	LRP1B	2	141116333	Intron	DEL	A	TCGA-17-Z014-01A-01W-0746-08	4550144	141116333	102083040	168	50783											
LRP1B	53353	broad.mit.edu	37	chr2	141625151	141625151	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttaatccataagtgaacaaGcacttaccctgtggctggcg	10	10	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141625151	C	C	141625151	1	2	47	0	1	0	0	0	0	0	0	0	9042	986	34	4		4	LRP1B	2	141625151	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	508818	141625151	101574222	169	50784											
LRP1B	53353	broad.mit.edu	37	chr2	141680487	141680487	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcctgagccaaaaggactCcacactcagggagacccaat	9	14	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141680487	A	A	141680487	1	1	47	0	1	0	0	0	0	0	0	0	9042	870	30	3		3	LRP1B	2	141680487	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	55336	141680487	101518886	170	50785											
LRP1B	53353	broad.mit.edu	37	chr2	141812561	141812561	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaaatggacagtatatAtttgcaggcaaacttcacct	8	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141812561	G	G	141812561	1	3	47	0	1	0	0	0	0	0	0	0	9042	464	16	5		5	LRP1B	2	141812561	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	132074	141812561	101386812	171	50786											
NEB	4703	broad.mit.edu	37	chr2	152362882	152362882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaagacactagacgatGttcccaggcaagtgccagag	10	10	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152362882	T	T	152362882	1	4	47	0	1	0	0	0	0	0	0	0	10397	1392	48	3		3	NEB	2	152362882	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	10550321	152362882	90836491	172	50787											
KCNJ3	3760	broad.mit.edu	37	chr2	155711582	155711582	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactcttgaggatgagttcTacaacttcagaaaaagccta	7	8	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155711582	C	C	155711582	2	2	47	1	0	0	0	0	0	0	0	1	8122	1509	53	5		5	KCNJ3	2	155711582	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3348700	155711582	87487791	173	50788											
DAPL1	92196	broad.mit.edu	37	chr2	159660784	159660784	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttccatgctgatttttatCtgtttgtagtaaaagctgga	8	6	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159660784	G	G	159660784	1	3	47	0	1	0	0	0	0	0	0	0	4271	928	32	4		4	DAPL1	2	159660784	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3949202	159660784	83538589	174	50789											
FAP	2191	broad.mit.edu	37	chr2	163029885	163029885	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcaacacattttcatcatCatttgcattacttccatctg	4	11	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163029885	G	G	163029885	1	3	47	0	1	0	0	0	0	0	0	0	5730	841	29	4		4	FAP	2	163029885	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3369101	163029885	80169488	175	50790											
GRB14	2888	broad.mit.edu	37	chr2	165404188	165404188	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctacacctatgtgaggcaGgtgctcaaaaagggtccagc	11	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165404188	A	A	165404188	2	1	47	1	0	0	0	0	0	0	0	1	6823	991	35	4		4	GRB14	2	165404188	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2374303	165404188	77795185	176	50791											
SCN3A	6328	broad.mit.edu	37	chr2	166021094	166021094	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaaataaatgttttcaAtcatagcaaatcctatcctt	3	7	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166021094	G	G	166021094	1	3	47	0	1	0	0	0	0	0	0	0	14031	116	4	5		5	SCN3A	2	166021094	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	616906	166021094	77178279	177	50792											
XIRP2	129446	broad.mit.edu	37	chr2	168103121	168103121	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaattgatgcctctgagaGaggaaatgttcagtttttca	9	5	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168103121	A	A	168103121	3	1	47	1	0	0	0	0	1	0	0	0	17557	942	33	4	5249	4	XIRP2	2	168103121	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2082027	168103121	75096252	178	50793											
LRP2	4036	broad.mit.edu	37	chr2	169986952	169986952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactacaggcatatgccacCacactcagctaatttttgca	7	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169986952	A	A	169986952	1	1	47	0	1	0	0	0	0	0	0	0	9043	609	21	2		2	LRP2	2	169986952	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1883831	169986952	73212421	179	50794											
MAP1D	254042	broad.mit.edu	37	chr2	172945095	172945095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggttctgatcacgtcgagGggcgcgcagatcctgaccaa	13	12	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172945095	T	T	172945095	3	4	47	1	0	0	0	0	1	0	0	0	9321	1223	43	2	1007	2	MAP1D	2	172945095	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2958143	172945095	70254278	180	50795											
RAPGEF4	11069	broad.mit.edu	37	chr2	173855682	173855682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatccaacactgtaattgcCagactatgattaaccttttc	5	11	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173855682	A	A	173855682	1	1	47	0	1	0	0	0	0	0	0	0	13154	609	21	2		2	RAPGEF4	2	173855682	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	910587	173855682	69343691	181	50796											
PDE11A	50940	broad.mit.edu	37	chr2	178862754	178862754	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatggacagttttagagaAgaagggtactgcctgctgag	15	5	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178862754	C	C	178862754	1	2	47	0	1	0	0	0	0	0	0	0	11725	87	3	5		5	PDE11A	2	178862754	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5007072	178862754	64336619	182	50797											
PDE11A	50940	broad.mit.edu	37	chr2	178862780	178862780	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtactgcctgctgagtgcacTgtaagagcctgcccacacac	10	14	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178862780	C	C	178862780	1	2	47	0	1	0	0	0	0	0	0	0	11725	1595	55	5		5	PDE11A	2	178862780	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	26	178862780	64336593	183	50798											
TTN	7273	broad.mit.edu	37	chr2	179594622	179594622	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaatgttgttgactgtcCattcctcagcactaagactg	7	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179594622	T	T	179594622	3	4	47	1	0	0	0	0	1	0	0	0	16861	603	21	4	86371	4	TTN	2	179594622	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	731842	179594622	63604751	184	50799											
TTN	7273	broad.mit.edu	37	chr2	179604301	179604301	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagctgaagcaacccctttAgtgacaggtgtggcatccaa	10	11	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179604301	T	T	179604301	2	4	47	1	0	0	0	0	0	0	0	1	16861	407	15	5		5	TTN	2	179604301	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	9679	179604301	63595072	185	50800											
TTN	7273	broad.mit.edu	37	chr2	179612314	179612314	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagttacttcttccacctccAttgaagtgattgattcactc	5	11	2	3	rs140786524		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179612314	G	G	179612314	3	3	47	1	0	0	0	0	1	0	0	0	16861	217	8	5	95484	5	TTN	2	179612314	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	8013	179612314	63587059	186	50801											
DNAJC10	54431	broad.mit.edu	37	chr2	183616742	183616743	+	Intron	INS	-	G	G													ttacttgttgcagaaatgatINSgggggggttttttgtgtcat							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183616743	G	G	183616742	6	5	47	0	1	1	1	0	0	0	0	0	4669	1479	51	0		0	DNAJC10	2	183616742	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	4004428	183616742	59582631	187	50802											
COL5A2	1290	broad.mit.edu	37	chr2	189950359	189950359	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctacattagggaggacCtgggaagataaataactcaa	9	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189950359	A	A	189950359	1	1	47	0	1	0	0	0	0	0	0	0	3729	696	24	2		2	COL5A2	2	189950359	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6333617	189950359	53249014	188	50803											
PARD3B	117583	broad.mit.edu	37	chr2	205496946	205496946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccatgtcagacgccttGctccccttttgccttctgcc	6	19	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205496946	T	T	205496946	1	4	47	0	1	0	0	0	0	0	0	0	11538	1334	46	3		3	PARD3B	2	205496946	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	15546587	205496946	37702427	189	50804											
MDH1B	130752	broad.mit.edu	37	chr2	207615683	207615683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatcaagtttaaaacagGgcgtgaataatgaagaggtc	10	4	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207615683	T	T	207615683	3	4	47	1	0	0	0	0	1	0	0	0	9502	1232	43	2	557	2	MDH1B	2	207615683	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2118737	207615683	35583690	190	50805											
FAM119A	151194	broad.mit.edu	37	chr2	208478080	208478080	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctccttaacaacagttttaGtttggatatgaggaggtaag	11	5	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	208478080	C	C	208478080	3	2	47	1	0	0	0	0	1	0	0	0	5459	1029	36	4	313	4	FAM119A	2	208478080	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	862397	208478080	34721293	191	50806											
PLEKHM3	389072	broad.mit.edu	37	chr2	208842339	208842339	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaagagaggcaaagtattGattagaattagttataagaa	10	1	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	208842339	C	C	208842339	1	2	47	0	1	0	0	0	0	0	0	0	12177	1305	45	4		4	PLEKHM3	2	208842339	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	364259	208842339	34357034	192	50807											
PIKFYVE	200576	broad.mit.edu	37	chr2	209215983	209215983	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattccccttaaaatcataaAacaacctaatcatttaggat	2	9	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209215983	T	T	209215983	1	4	47	0	1	0	0	0	0	0	0	0	12019	29	1	5		5	PIKFYVE	2	209215983	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	373644	209215983	33983390	193	50808											
CPS1	1373	broad.mit.edu	37	chr2	211464237	211464237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcatcaaggcagaacagCcagatgggttaattctgggc	13	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211464237	A	A	211464237	3	1	47	1	0	0	0	0	1	0	0	0	3855	739	26	3	1577	3	CPS1	2	211464237	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2248254	211464237	31735136	194	50809											
CPS1	1373	broad.mit.edu	37	chr2	211515227	211515227	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtagtgacatttatctctTaataaaatgtagtgacattt	6	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211515227	A	A	211515227	1	1	47	0	1	0	0	0	0	0	0	0	3855	1769	61	5		5	CPS1	2	211515227	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	50990	211515227	31684146	195	50810											
MARCH4	57574	broad.mit.edu	37	chr2	217211356	217211356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagaaattaaccaggtgGgggcaaagggcataagtaag	16	4	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217211356	T	T	217211356	1	4	47	0	1	0	0	0	0	0	0	0	9395	1247	43	2		2	MARCH4	2	217211356	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5696129	217211356	25988017	196	50811											
ABCB6	10058	broad.mit.edu	37	chr2	220074622	220074622	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagacacatcttattcccttCtgggttagtctttgagaggg	11	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220074622	A	A	220074622	1	1	47	0	1	0	0	0	0	0	0	0	45	928	32	3		3	ABCB6	2	220074622	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2863266	220074622	23124751	197	50812											
FARSB	10056	broad.mit.edu	37	chr2	223507723	223507723	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattatttccttctcagatGtctaaaacaagccaaaaagt	4	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223507723	A	A	223507723	3	1	47	1	0	0	0	0	1	0	0	0	5737	1391	48	4	1713	4	FARSB	2	223507723	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3433101	223507723	19691650	198	50813											
SERPINE2	5270	broad.mit.edu	37	chr2	224866446	224866446	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catccccaggaccgacgcaaTcccatggggagagatcacga	11	14	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224866446	A	A	224866446	3	1	47	1	0	0	0	0	1	0	0	0	14225	1435	50	5	1056	5	SERPINE2	2	224866446	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1358723	224866446	18332927	199	50814											
SPHKAP	80309	broad.mit.edu	37	chr2	228881213	228881213	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcccttctgcttcctctaGgaggctgcttttggaaagga	11	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228881213	A	A	228881213	2	1	47	1	0	0	0	0	0	0	0	1	15166	991	35	4		4	SPHKAP	2	228881213	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4014767	228881213	14318160	200	50815											
SPHKAP	80309	broad.mit.edu	37	chr2	229007136	229007136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagagcttgcagtgagcCgagatggcaccagtgcactc	14	11	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229007136	A	A	229007136	1	1	47	0	1	0	0	0	0	0	0	0	15166	667	23	1		1	SPHKAP	2	229007136	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	125923	229007136	14192237	201	50816											
SP140	11262	broad.mit.edu	37	chr2	231135185	231135185	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcccctagaagaaagagagGaatgattatccaagcatctg	9	8	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231135185	T	T	231135185	1	4	47	0	1	0	0	0	0	0	0	0	15076	1189	41	3		3	SP140	2	231135185	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2128049	231135185	12064188	202	50817											
SP100	6672	broad.mit.edu	37	chr2	231338154	231338154	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcaagcatctgacatgatGggtaaggctaccctagggtc	12	9	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231338154	C	C	231338154	3	2	47	1	0	0	0	0	1	0	0	0	15074	1362	47	4	1607	4	SP100	2	231338154	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	202969	231338154	11861219	203	50818											
EIF4E2	9470	broad.mit.edu	37	chr2	233431487	233431487	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttactgccttcatacaaAaaaaggctgtgaaaccatat	5	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233431487	G	G	233431487	1	3	47	0	1	0	0	0	0	0	0	0	5072	29	1	5		5	EIF4E2	2	233431487	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2093333	233431487	9767886	204	50819											
COL6A3	1293	broad.mit.edu	37	chr2	238266650	238266650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgagggacaagcccttcgGccacaacccatccaggtaac	9	15	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238266650	T	T	238266650	1	4	47	0	1	0	0	0	0	0	0	0	3733	1218	42	3		3	COL6A3	2	238266650	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4835163	238266650	4932723	205	50820											
LRRFIP1	9208	broad.mit.edu	37	chr2	238688021	238688021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaccctgttatgtttggaGgaaacaagttccttaaagct	9	7	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238688021	T	T	238688021	1	4	47	0	1	0	0	0	0	0	0	0	9114	1015	35	2		2	LRRFIP1	2	238688021	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	421371	238688021	4511352	206	50821											
GRM7	2917	broad.mit.edu	37	chr3	7348394	7348394	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttctggtgccatgctgaAtggccaagcatgtgactttt	11	8	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7348394	T	T	7348394	1	4	47	0	1	0	0	0	0	0	0	0	6868	116	4	5		5	GRM7	3	7348394	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08		7348394	190674036	207	50822											
CIDEC	63924	broad.mit.edu	37	chr3	9920077	9920077	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagttctggcttacagctcAtaggtggctctctttccatt	9	10	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9920077	T	T	9920077	1	4	47	0	1	0	0	0	0	0	0	0	3458	232	8	5		5	CIDEC	3	9920077	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2571683	9920077	188102353	208	50823											
IL17RC	84818	broad.mit.edu	37	chr3	9959148	9959148	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaggaaaggctcagggttcAgtttttggctcagcaaagcc	13	9	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9959148	T	T	9959148	3	4	47	1	0	0	0	0	1	0	0	0	7711	188	7	5	151	5	IL17RC	3	9959148	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	39071	9959148	188063282	209	50824											
ATP2B2	491	broad.mit.edu	37	chr3	10417176	10417176	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctcgggcacggcgaccaCcagcaccgtcacgccaatga	10	19	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10417176	T	T	10417176	3	4	47	1	0	0	0	0	1	0	0	0	1144	507	18	4	2429	4	ATP2B2	3	10417176	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	458028	10417176	187605254	210	50825											
GALNTL2	117248	broad.mit.edu	37	chr3	16254335	16254335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagcaggaggtgggccagGgagggctcctttctcttgcc	15	11	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16254335	T	T	16254335	1	4	47	0	1	0	0	0	0	0	0	0	6284	1247	43	2		2	GALNTL2	3	16254335	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5837159	16254335	181768095	211	50826											
SATB1	6304	broad.mit.edu	37	chr3	18390907	18390907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggtgtacttgggaaggtCgagctgggcagacagagtct	17	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18390907	A	A	18390907	3	1	47	1	0	0	0	0	1	0	0	0	13965	884	31	3	248	3	SATB1	3	18390907	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2136572	18390907	179631523	212	50827											
NEK10	152110	broad.mit.edu	37	chr3	27243842	27243842	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgggcagttatatacaaatCacaaagatctgtttaataag	7	5	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27243842	T	T	27243842	1	4	47	0	1	0	0	0	0	0	0	0	10417	841	29	4		4	NEK10	3	27243842	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	8852935	27243842	170778588	213	50828											
NEK10	152110	broad.mit.edu	37	chr3	27256489	27256489	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaggcaccggtcccacttCcggccaagctccaactccga	9	19	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27256489	A	A	27256489	1	1	47	0	1	0	0	0	0	0	0	0	10417	870	30	3		3	NEK10	3	27256489	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	12647	27256489	170765941	214	50829											
NEK10	152110	broad.mit.edu	37	chr3	27387648	27387648	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctctgtgtccacccgccctGatggcgggctcagacttcgt	12	15	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27387648	A	A	27387648	2	1	47	1	0	0	0	0	0	0	0	1	10417	1280	45	4		4	NEK10	3	27387648	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	131159	27387648	170634782	215	50830											
SCN10A	6336	broad.mit.edu	37	chr3	38770317	38770317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtgaggttccccagtgCccccactgagtttccgatga	12	12	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38770317	A	A	38770317	3	1	47	1	0	0	0	0	1	0	0	0	14025	739	26	3	3566	3	SCN10A	3	38770317	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	11382669	38770317	159252113	216	50831											
SETD2	29072	broad.mit.edu	37	chr3	47098503	47098503	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccgggggccggcactggCaagacagcaacgctggagtc	18	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47098503	T	T	47098503	2	4	47	1	0	0	0	0	0	0	0	1	14244	709	25	4		4	SETD2	3	47098503	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	8328186	47098503	150923927	217	50832											
VPRBP	9730	broad.mit.edu	37	chr3	51477789	51477789	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacagtccttaccagctgtGaattttcatctctatagttg	6	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51477789	T	T	51477789	4	4	47	1	0	0	0	0	0	1	0	0	17312	1294	45	3	3930	3	VPRBP	3	51477789	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4379286	51477789	146544641	218	50833											
PARP3	10039	broad.mit.edu	37	chr3	51979834	51979834	+	Intron	DEL	C	-	-													ggggattagctcctgagcctCccaccctggcaaccagcttc							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51979834	-	-	51979834	6	5	47	0	1	1	0	1	0	0	0	0	11556	870	30	0		0	PARP3	3	51979834	Intron	DEL	C	TCGA-17-Z014-01A-01W-0746-08	502045	51979834	146042596	219	50834											
DNAH1	25981	broad.mit.edu	37	chr3	52433737	52433737	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgccaacacccaaccgCaaggcccaggaccaggactt	8	17	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52433737	T	T	52433737	2	4	47	1	0	0	0	0	0	0	0	1	4637	697	25	4		4	DNAH1	3	52433737	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	453903	52433737	145588693	220	50835											
ITIH3	3699	broad.mit.edu	37	chr3	52840934	52840934	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcctcacagttaatgggCagatcactggcgacaagaga	12	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52840934	T	T	52840934	4	4	47	1	0	0	0	0	0	1	0	0	7975	711	25	4	2148	4	ITIH3	3	52840934	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	407197	52840934	145181496	221	50836											
IL17RB	55540	broad.mit.edu	37	chr3	53886163	53886163	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtggtaaagtaagcactTttttgttttttgttttgttt	9	3	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53886163	A	A	53886163	1	1	47	0	1	0	0	0	0	0	0	0	7710	1856	64	5		5	IL17RB	3	53886163	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1045229	53886163	144136267	222	50837											
ERC2	26059	broad.mit.edu	37	chr3	56467671	56467671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgagtaatcactgagggCtttaaagcaggaaaatagca	10	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56467671	A	A	56467671	1	1	47	0	1	0	0	0	0	0	0	0	5253	812	28	3		3	ERC2	3	56467671	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2581508	56467671	141554759	223	50838											
MAGI1	9223	broad.mit.edu	37	chr3	65479268	65479268	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcagaaagttatagtccaCgccaggcacttctccttctc	7	13	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65479268	T	T	65479268	3	4	47	1	0	0	0	0	1	0	0	0	9282	536	19	4	4237	4	MAGI1	3	65479268	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9011597	65479268	132543162	224	50839											
FRMD4B	23150	broad.mit.edu	37	chr3	69374227	69374227	+	Intron	DEL	A	-	-													gcaacagtgagatactgtctAaaaaaaaaaaaagaaagaaa					rs112470737		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69374227	-	-	69374227	6	5	47	0	1	1	0	1	0	0	0	0	6112	377	13	0		0	FRMD4B	3	69374227	Intron	DEL	A	TCGA-17-Z014-01A-01W-0746-08	3894959	69374227	128648203	225	50840											
CHMP2B	25978	broad.mit.edu	37	chr3	87294816	87294816	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttctgaaataaattattgacGactaccctttaataatttta	3	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87294816	C	C	87294816	1	2	47	0	1	0	0	0	0	0	0	0	3386	1073	37	4		4	CHMP2B	3	87294816	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	17920589	87294816	110727614	226	50841											
ZNF654	55279	broad.mit.edu	37	chr3	88188579	88188579	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttagaaacagaggacttaTgcagaagcatttgaagaatc	9	5	0	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88188579	C	C	88188579	3	2	47	1	0	0	0	0	1	0	0	0	18194	1464	51	5	121	5	ZNF654	3	88188579	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	893763	88188579	109833851	227	50842											
EPHA6	285220	broad.mit.edu	37	chr3	97185130	97185130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttagatagaaaacattcCcctcaagcaacataataaac	5	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97185130	A	A	97185130	1	1	47	0	1	0	0	0	0	0	0	0	5213	638	22	2		2	EPHA6	3	97185130	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	8996551	97185130	100837300	228	50843											
ST3GAL6	10402	broad.mit.edu	37	chr3	98491720	98491720	+	Frame_Shift_Del	DEL	T	-	-													aagattgcttccttgtatggTagcgataagtttgatttgcc							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98491720	-	-	98491720	7	5	47	1	0	1	0	1	0	0	0	0	15337	1625	57	0	241	0	ST3GAL6	3	98491720	Frame_Shift_Del	DEL	T	TCGA-17-Z014-01A-01W-0746-08	1306590	98491720	99530710	229	50844											
TBC1D23	55773	broad.mit.edu	37	chr3	100014011	100014011	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatctacaacaagcagatccAttttttatttatttcttaat	2	7	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100014011	T	T	100014011	2	4	47	1	0	0	0	0	0	0	0	1	15732	204	8	5		5	TBC1D23	3	100014011	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1522291	100014011	98008419	230	50845											
ZPLD1	131368	broad.mit.edu	37	chr3	102189415	102189415	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgttacttggcttctaaCgagaactcaaagtggttcct	8	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102189415	T	T	102189415	1	4	47	0	1	0	0	0	0	0	0	0	18350	551	19	4		4	ZPLD1	3	102189415	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2175404	102189415	95833015	231	50846											
MYH15	22989	broad.mit.edu	37	chr3	108220687	108220688	+	Nonsense_Mutation	DNP	CC	AA	AA													catctgctggattttgtcctCctttatgctcagactctgca							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	108220688	AA	AA	108220687	4	1	47	1	0	0	0	0	0	1	0	0	10128	864	30	3	5725	3	MYH15	3	108220687	Nonsense_Mutation	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	6031272	108220687	89801743	232	50847											
MORC1	27136	broad.mit.edu	37	chr3	108751518	108751518	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggttcatacatatgaacTttagaaattaaaaatgaata	5	4	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108751518	G	G	108751518	1	3	47	0	1	0	0	0	0	0	0	0	9795	1624	56	5		5	MORC1	3	108751518	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	530831	108751518	89270912	233	50848											
CD200	4345	broad.mit.edu	37	chr3	112063714	112063714	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattttctctttcttttctAtatttgacattgaatataca	3	7	3	2	rs149423229	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112063714	G	G	112063714	1	3	47	0	1	0	0	0	0	0	0	0	3010	464	16	5		5	CD200	3	112063714	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3312196	112063714	85958716	234	50849											
IGSF11	152404	broad.mit.edu	37	chr3	118647314	118647314	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatgcttgagagtagcttcGtgagtaaagcccgaacagcc	12	9	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118647314	A	A	118647314	1	1	47	0	1	0	0	0	0	0	0	0	7668	1160	40	4		4	IGSF11	3	118647314	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	6583600	118647314	79375116	235	50850											
IGSF11	152404	broad.mit.edu	37	chr3	118647653	118647653	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtagacagtaccaaatgctGcaccaaacattggaaaattt	8	8	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118647653	C	C	118647653	1	2	47	0	1	0	0	0	0	0	0	0	7668	1334	46	4		4	IGSF11	3	118647653	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	339	118647653	79374777	236	50851											
ADPRH	141	broad.mit.edu	37	chr3	119301158	119301158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcttggatgccctagacGtgggaaggtggagagttagt	18	6	0	2	rs146978056		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119301158	T	T	119301158	3	4	47	1	0	0	0	0	1	0	0	0	331	1145	40	3	144	3	ADPRH	3	119301158	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	653505	119301158	78721272	237	50852											
NR1I2	8856	broad.mit.edu	37	chr3	119501720	119501720	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagttttctacctctactAttgaaagggcaccttgtccc	8	11	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119501720	G	G	119501720	1	3	47	0	1	0	0	0	0	0	0	0	10715	464	16	5		5	NR1I2	3	119501720	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	200562	119501720	78520710	238	50853											
NR1I2	8856	broad.mit.edu	37	chr3	119534325	119534325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctgacatcccccccagCcttatctgccctccccaggg	7	21	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119534325	A	A	119534325	1	1	47	0	1	0	0	0	0	0	0	0	10715	754	26	3		3	NR1I2	3	119534325	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	32605	119534325	78488105	239	50854											
POLQ	10721	broad.mit.edu	37	chr3	121168430	121168430	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acatccacagagactgatatCcagcaaacatcttttctgcc	5	13	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121168430	G	G	121168430	1	3	47	0	1	0	0	0	0	0	0	0	12303	870	30	4		4	POLQ	3	121168430	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1634105	121168430	76854000	240	50855											
ADCY5	111	broad.mit.edu	37	chr3	123166724	123166724	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagccgctccagtttgtcCgacgggaacttcttggagcg	12	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123166724	T	T	123166724	2	4	47	1	0	0	0	0	0	0	0	1	297	639	23	4		4	ADCY5	3	123166724	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1998294	123166724	74855706	241	50856											
KALRN	8997	broad.mit.edu	37	chr3	123946896	123946896	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctatcctaaaggaaaagGtggccttcgtgtctggtgag	12	8	1	1	rs36107295		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123946896	T	T	123946896	3	4	47	1	0	0	0	0	1	0	0	0	8045	1261	44	3	133	3	KALRN	3	123946896	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	780172	123946896	74075534	242	50857											
KALRN	8997	broad.mit.edu	37	chr3	124165917	124165917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatacccaaagaattgcagCtgctgggtagagcagctgta	12	8	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124165917	A	A	124165917	1	1	47	0	1	0	0	0	0	0	0	0	8045	812	28	3		3	KALRN	3	124165917	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	219021	124165917	73856513	243	50858											
MUC13	56667	broad.mit.edu	37	chr3	124646922	124646922	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atactaaatcatatccaactCattctttttttttttttttt	0	7	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124646922	A	A	124646922	1	1	47	0	1	0	0	0	0	0	0	0	10065	841	29	3		3	MUC13	3	124646922	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	481005	124646922	73375508	244	50859											
OSBPL11	114885	broad.mit.edu	37	chr3	125279150	125279150	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtaaataaataaaaagTcctgacataaacatgaacaa	4	5	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125279150	C	C	125279150	1	2	47	0	1	0	0	0	0	0	0	0	11370	1682	58	5		5	OSBPL11	3	125279150	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	632228	125279150	72743280	245	50860											
ALG1L	200810	broad.mit.edu	37	chr3	125651462	125651462	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctccaccatcccccaaCcaaacagacacccagggtcc	4	23	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125651462	T	T	125651462	1	4	47	0	1	0	0	0	0	0	0	0	517	522	18	4		4	ALG1L	3	125651462	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	372312	125651462	72370968	246	50861											
ALG1L2	644974	broad.mit.edu	37	chr3	129811951	129811951	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaaacacagagtttgaAcaactgactcttgacggaca	7	8	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129811951	G	G	129811951	2	3	47	1	0	0	0	0	0	0	0	1	518	40	2	5		5	ALG1L2	3	129811951	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	4160489	129811951	68210479	247	50862			1	48		3	3	173	N	C_A	1.438748e-05
ALG1L2	644974	broad.mit.edu	37	chr3	129812106	129812106	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgatcttgtctccttaatcCtcactgcagctctctgccat	5	15	4	0	rs138450646	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129812106	T	T	129812106	1	4	47	0	1	0	0	0	0	0	0	0	518	696	24	4		4	ALG1L2	3	129812106	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	155	129812106	68210324	248	50863			1	48		3	3	173	N	C_A	1.438748e-05
ALG1L2	644974	broad.mit.edu	37	chr3	129812123	129812123	+	Intron	DEL	C	-	-													atcctcactgcagctctctgCcatagggtcttacactgctt							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129812123	-	-	129812123	6	5	47	0	1	1	0	1	0	0	0	0	518	754	26	0		0	ALG1L2	3	129812123	Intron	DEL	C	TCGA-17-Z014-01A-01W-0746-08	17	129812123	68210307	249	50864			1	48		3	3	173	N	C_A	1.438748e-05
TMEM108	66000	broad.mit.edu	37	chr3	133050235	133050235	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttaacaggtctctcccatTgttgattattttatggccca	8	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133050235	C	C	133050235	1	2	47	0	1	0	0	0	0	0	0	0	16147	1827	63	5		5	TMEM108	3	133050235	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3238112	133050235	64972195	250	50865											
CDV3	55573	broad.mit.edu	37	chr3	133302784	133302784	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataatcatggataaaactaAcgatttggactgaaaatttt	7	4	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133302784	T	T	133302784	1	4	47	0	1	0	0	0	0	0	0	0	3211	58	2	5		5	CDV3	3	133302784	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	252549	133302784	64719646	251	50866											
KY	339855	broad.mit.edu	37	chr3	134337951	134337951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggaagagggagagggatGggtccggtggtcagcatggg	22	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134337951	T	T	134337951	1	4	47	0	1	0	0	0	0	0	0	0	8658	1363	47	2		2	KY	3	134337951	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1035167	134337951	63684479	252	50867											
DZIP1L	199221	broad.mit.edu	37	chr3	137799408	137799408	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagaaagtaaggtcccaCcttcctctggagagtcctcc	10	12	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137799408	A	A	137799408	5	1	47	1	0	0	0	0	0	0	1	0	4904	521	18	3	1051	3	DZIP1L	3	137799408	Splice_Site	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3461457	137799408	60223022	253	50868											
CLSTN2	64084	broad.mit.edu	37	chr3	140001472	140001472	+	Intron	DEL	C	-	-													tttttggtccaaggattcctCccatatttgtcacatcatgt					rs5852977		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140001472	-	-	140001472	6	5	47	0	1	1	0	1	0	0	0	0	3594	870	30	0		0	CLSTN2	3	140001472	Intron	DEL	C	TCGA-17-Z014-01A-01W-0746-08	2202064	140001472	58020958	254	50869											
GPR87	53836	broad.mit.edu	37	chr3	151012910	151012910	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcaccggcaagacaattgTgtcaaattcattgtgaaggg	11	7	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151012910	A	A	151012910	3	1	47	1	0	0	0	0	1	0	0	0	6781	1696	59	5	956	5	GPR87	3	151012910	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	11011438	151012910	47009520	255	50870											
SGEF	26084	broad.mit.edu	37	chr3	153912517	153912517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttagcaaggtaactgttGggtgacagtttgtttgtaag	13	3	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153912517	T	T	153912517	1	4	47	0	1	0	0	0	0	0	0	0	14318	1363	47	2		2	SGEF	3	153912517	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2899607	153912517	44109913	256	50871											
GPR149	344758	broad.mit.edu	37	chr3	154070869	154070869	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtgcaatatccccatGtaaacactgggcattctgtt	8	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154070869	T	T	154070869	1	4	47	0	1	0	0	0	0	0	0	0	6719	1392	48	3		3	GPR149	3	154070869	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	158352	154070869	43951561	257	50872											
SI	6476	broad.mit.edu	37	chr3	164758884	164758884	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgcaggatcctgatgcTgtgagatagaaagagaaatt	11	4	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164758884	A	A	164758884	5	1	47	1	0	0	0	0	0	0	1	0	14410	1594	55	5	3604	5	SI	3	164758884	Splice_Site	SNP	T	TCGA-17-Z014-01A-01W-0746-08	10688015	164758884	33263546	258	50873											
WDR49	151790	broad.mit.edu	37	chr3	167338173	167338173	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagaatataaatgtacaaGtcagaggtgaccatttactt	7	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167338173	A	A	167338173	1	1	47	0	1	0	0	0	0	0	0	0	17429	1044	36	4		4	WDR49	3	167338173	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2579289	167338173	30684257	259	50874											
NAALADL2	254827	broad.mit.edu	37	chr3	175520847	175520847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttttcaatacttatagaGgcttgggaacactgcaaacc	9	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175520847	T	T	175520847	3	4	47	1	0	0	0	0	1	0	0	0	10224	991	35	2	2298	2	NAALADL2	3	175520847	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	8182674	175520847	22501583	260	50875											
ATP13A3	79572	broad.mit.edu	37	chr3	194175080	194175080	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattcatcagtgctccacagTataacactgaacagctggaa	7	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194175080	A	A	194175080	2	1	47	1	0	0	0	0	0	0	0	1	1129	1628	57	5		5	ATP13A3	3	194175080	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	18654233	194175080	3847350	261	50876											
ZNF595	152687	broad.mit.edu	37	chr4	59555	59555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgcattaattaatttcaGtgcctttctacaagaaaaaa	4	7	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59555	T	T	59555	1	4	47	0	1	0	0	0	0	0	0	0	18152	1044	36	3		3	ZNF595	4	59555	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08		59555	191094721	262	50877											
ZNF595	152687	broad.mit.edu	37	chr4	63890	63890	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcctccagggccacagcttCtaccttaacatattactgaa	6	13	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63890	T	T	63890	1	4	47	0	1	0	0	0	0	0	0	0	18152	928	32	4		4	ZNF595	4	63890	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4335	63890	191090386	263	50878											
ZNF718	255403	broad.mit.edu	37	chr4	106262	106262	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagcagcacagaccactgtGaggggaagtgcaagatatct	12	10	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106262	A	A	106262	1	1	47	0	1	0	0	0	0	0	0	0	18248	1305	45	4		4	ZNF718	4	106262	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	42372	106262	191048014	264	50879											
KIAA1530	57654	broad.mit.edu	37	chr4	1345538	1345538	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgaatgctcggagtctggcAgaaaggaagagagaagagga	16	5	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1345538	T	T	1345538	2	4	47	1	0	0	0	0	0	0	0	1	8311	175	7	5		5	KIAA1530	4	1345538	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1239276	1345538	189808738	265	50880											
FAM193A	8603	broad.mit.edu	37	chr4	2701538	2701538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttcaaggaggaatttcaGcggcttcaggagcttcagaa	12	8	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2701538	T	T	2701538	3	4	47	1	0	0	0	0	1	0	0	0	5571	962	34	3	2824	3	FAM193A	4	2701538	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1356000	2701538	188452738	266	50881											
OTOP1	133060	broad.mit.edu	37	chr4	4199344	4199344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatggccaagattgagcccCaggagataagccaggagccc	14	11	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4199344	A	A	4199344	3	1	47	1	0	0	0	0	1	0	0	0	11399	595	21	2	629	2	OTOP1	4	4199344	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1497806	4199344	186954932	267	50882											
CRMP1	1400	broad.mit.edu	37	chr4	5827139	5827139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagtgtccaaggccacgtGtccatttcctcagaagcagc	9	13	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5827139	T	T	5827139	1	4	47	0	1	0	0	0	0	0	0	0	3922	1392	48	3		3	CRMP1	4	5827139	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1627795	5827139	185327137	268	50883											
NKX3-2	579	broad.mit.edu	37	chr4	13544252	13544252	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgggagtggggcggaaatAcactttgatcccactcaagc	12	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13544252	T	T	13544252	1	4	47	0	1	0	0	0	0	0	0	0	10551	406	14	5		5	NKX3-2	4	13544252	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	7717113	13544252	177610024	269	50884											
LDB2	9079	broad.mit.edu	37	chr4	16760835	16760835	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagggttaatgtggcgtcatCttcaaaaaattcagtggcaa	10	6	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16760835	A	A	16760835	3	1	47	1	0	0	0	0	1	0	0	0	8768	913	32	3	1077	3	LDB2	4	16760835	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3216583	16760835	174393441	270	50885											
SEL1L3	23231	broad.mit.edu	37	chr4	25834645	25834645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgttaaaagagatatccagtCgaaaccactccttcaaaggt	7	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25834645	A	A	25834645	3	1	47	1	0	0	0	0	1	0	0	0	14125	884	31	3	2408	3	SEL1L3	4	25834645	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9073810	25834645	165319631	271	50886											
TBC1D19	55296	broad.mit.edu	37	chr4	26721783	26721783	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttcctctagtgggaagTgaaaaaattacaacttttat	7	6	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26721783	C	C	26721783	1	2	47	0	1	0	0	0	0	0	0	0	15726	1711	59	5		5	TBC1D19	4	26721783	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	887138	26721783	164432493	272	50887											
ARAP2	116984	broad.mit.edu	37	chr4	36128567	36128567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctgggctcatgtgatcCtcccacctcagtcttcagaa	7	14	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36128567	A	A	36128567	1	1	47	0	1	0	0	0	0	0	0	0	841	696	24	2		2	ARAP2	4	36128567	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9406784	36128567	155025709	273	50888											
TLR1	7096	broad.mit.edu	37	chr4	38799909	38799909	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttaaagtcttgaaggccctCagggtcttctttttccccat	8	11	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38799909	A	A	38799909	4	1	47	1	0	0	0	0	0	1	0	0	16072	835	29	3	1820	3	TLR1	4	38799909	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2671342	38799909	152354367	274	50889											
GABRG1	2565	broad.mit.edu	37	chr4	46053559	46053559	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacaaaaatgaaacaaacaGaaacaaagagatccatcgca	5	8	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46053559	C	C	46053559	3	2	47	1	0	0	0	0	1	0	0	0	6231	942	33	4	392	4	GABRG1	4	46053559	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	7253650	46053559	145100717	275	50890											
COX7B2	170712	broad.mit.edu	37	chr4	46737033	46737033	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccattctattccaatctgAgtggctgtaaacacccatgt	6	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46737033	C	C	46737033	2	2	47	1	0	0	0	0	0	0	0	1	3815	291	11	5		5	COX7B2	4	46737033	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	683474	46737033	144417243	276	50891											
GABRB1	2560	broad.mit.edu	37	chr4	47322175	47322175	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctgcatgtatgatggatCttcgaagatatccattggat	10	7	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47322175	G	G	47322175	3	3	47	1	0	0	0	0	1	0	0	0	6226	913	32	4	511	4	GABRB1	4	47322175	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	585142	47322175	143832101	277	50892											
ATP10D	57205	broad.mit.edu	37	chr4	47560036	47560036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgttatgaggccgagaGcccagacgaagcggccttag	14	11	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47560036	T	T	47560036	3	4	47	1	0	0	0	0	1	0	0	0	1122	971	34	3	2222	3	ATP10D	4	47560036	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	237861	47560036	143594240	278	50893											
CORIN	10699	broad.mit.edu	37	chr4	47746615	47746615	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatgactaaaaaaaaaaaaAgagaaaggtgaaaattagtg	8	3	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47746615	T	T	47746615	1	4	47	0	1	0	0	0	0	0	0	0	3784	87	3	5		5	CORIN	4	47746615	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	186579	47746615	143407661	279	50894											
SCFD2	152579	broad.mit.edu	37	chr4	53831571	53831571	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgcccatttcccccagcGgctgagcacatgcttctttt	7	15	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53831571	A	A	53831571	1	1	47	0	1	0	0	0	0	0	0	0	14002	1131	39	4		4	SCFD2	4	53831571	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	6084956	53831571	137322705	280	50895											
PDGFRA	5156	broad.mit.edu	37	chr4	54256619	54256619	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaaaggtgtttatattttCtgtttgtctatggtatcgcc	8	5	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54256619	T	T	54256619	1	4	47	0	1	0	0	0	0	0	0	0	11755	928	32	4		4	PDGFRA	4	54256619	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	425048	54256619	136897657	281	50896											
FIP1L1	81608	broad.mit.edu	37	chr4	54319108	54319108	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctttccccatcttcctgGttctgctccttcgtggccta	7	16	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54319108	A	A	54319108	3	1	47	1	0	0	0	0	1	0	0	0	5953	1261	44	4	1400	4	FIP1L1	4	54319108	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	62489	54319108	136835168	282	50897											
PDGFRA	5156	broad.mit.edu	37	chr4	54751362	54751362	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaagaagaagaagaagaaGaaggaggaggaggaggagga	19	0	0	7			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54751362	T	T	54751362	1	4	47	0	1	0	0	0	0	0	0	0	11755	957	33	3		3	PDGFRA	4	54751362	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	432254	54751362	136402914	283	50898											
PDGFRA	5156	broad.mit.edu	37	chr4	55141092	55141092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtggacccgatgcagCtgccttatgactcaagatgg	11	9	1	2	rs143003840		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55141092	A	A	55141092	3	1	47	1	0	0	0	0	1	0	0	0	11755	796	28	3	1780	3	PDGFRA	4	55141092	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	389730	55141092	136013184	284	50899											
PDGFRA	5156	broad.mit.edu	37	chr4	55156405	55156405	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacagttaaataatagtaaGttctgagtgtctctattcat	7	5	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55156405	T	T	55156405	1	4	47	0	1	0	0	0	0	0	0	0	11755	1044	36	3		3	PDGFRA	4	55156405	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	15313	55156405	135997871	285	50900											
KDR	3791	broad.mit.edu	37	chr4	55968679	55968679	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtgggtgccacacgctctaGacacacaaaaagaaaatcac	8	12	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55968679	A	A	55968679	1	1	47	0	1	0	0	0	0	0	0	0	8209	957	33	4		4	KDR	4	55968679	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	812274	55968679	135185597	286	50901											
TMEM165	55858	broad.mit.edu	37	chr4	56290701	56290701	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taatgctgtgacgcttgcttCcaggacccctatggtgtagc	11	11	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56290701	T	T	56290701	1	4	47	0	1	0	0	0	0	0	0	0	16203	870	30	4		4	TMEM165	4	56290701	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	322022	56290701	134863575	287	50902											
KIAA1211	57482	broad.mit.edu	37	chr4	57181645	57181645	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagccccgccaggagtctccCagcagcgcgtccgcactcgc	11	19	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57181645	G	G	57181645	2	3	47	1	0	0	0	0	0	0	0	1	8285	581	21	4		4	KIAA1211	4	57181645	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	890944	57181645	133972631	288	50903											
REST	5978	broad.mit.edu	37	chr4	57797251	57797251	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatggaggtggtccagaagGagcctgttcagatagagctg	15	8	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57797251	A	A	57797251	3	1	47	1	0	0	0	0	1	0	0	0	13342	1175	41	4	2237	4	REST	4	57797251	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	615606	57797251	133357025	289	50904											
TECRL	253017	broad.mit.edu	37	chr4	65180447	65180447	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaataaaagaggaggtatAttagcagaggtcctgtgtat	11	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65180447	T	T	65180447	3	4	47	1	0	0	0	0	1	0	0	0	15868	449	16	5	653	5	TECRL	4	65180447	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	7383196	65180447	125973829	290	50905											
EPHA5	2044	broad.mit.edu	37	chr4	66286125	66286125	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaaaatgaaaaaaaaaagAaagtgaggacattttttatt	7	2	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66286125	T	T	66286125	1	4	47	0	1	0	0	0	0	0	0	0	5212	261	9	5		5	EPHA5	4	66286125	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1105678	66286125	124868151	291	50906											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68749616	68749616	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagatatagtaaaacttttaAagctacaaagacaaaaacag	5	5	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68749616	T	T	68749616	1	4	47	0	1	0	0	0	0	0	0	0	16364	29	1	5		5	TMPRSS11D	4	68749616	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2463491	68749616	122404660	292	50907											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68812124	68812124	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatgtaaatggagctttgcAgaaaaataaaatcaaataga	7	3	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68812124	T	T	68812124	1	4	47	0	1	0	0	0	0	0	0	0	16362	203	7	5		5	TMPRSS11A	4	68812124	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	62508	68812124	122342152	293	50908											
NPFFR2	10886	broad.mit.edu	37	chr4	72959099	72959099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatgtctagatctctagCaaggccaggtaagtttttct	10	7	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72959099	A	A	72959099	1	1	47	0	1	0	0	0	0	0	0	0	10673	725	25	3		3	NPFFR2	4	72959099	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4146975	72959099	118195177	294	50909											
FRAS1	80144	broad.mit.edu	37	chr4	79447580	79447580	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagacttgtaaagttcttaGatgctggacacaaataccac	8	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79447580	C	C	79447580	1	2	47	0	1	0	0	0	0	0	0	0	6102	957	33	4		4	FRAS1	4	79447580	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	6488481	79447580	111706696	295	50910											
BMP2K	55589	broad.mit.edu	37	chr4	79766106	79766107	+	Missense_Mutation	DNP	GG	AT	AT													aaaatattttgttgaatgatGgtgggaactatgtactttgt							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	79766107	AT	AT	79766106	3	1	47	1	0	0	0	0	1	0	0	0	1466	1348	47	4	589	4	BMP2K	4	79766106	Missense_Mutation	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	318526	79766106	111388170	296	50911											
AFF1	4299	broad.mit.edu	37	chr4	87974134	87974134	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actaagaactctagttgggtCatgtattaagatcatgtgtt	9	5	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87974134	T	T	87974134	1	4	47	0	1	0	0	0	0	0	0	0	356	841	29	4		4	AFF1	4	87974134	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	8208028	87974134	103180142	297	50912											
NPNT	255743	broad.mit.edu	37	chr4	106888393	106888393	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagccccagggggaaaagCtgcacgcttggtgctacctc	12	13	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106888393	T	T	106888393	3	4	47	1	0	0	0	0	1	0	0	0	10685	797	28	4	1585	4	NPNT	4	106888393	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	18914259	106888393	84265883	298	50913											
DKK2	27123	broad.mit.edu	37	chr4	107956733	107956733	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggacgaatccttgctccGcatcaacgcggccatctccc	9	17	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107956733	T	T	107956733	2	4	47	1	0	0	0	0	0	0	0	1	4585	1086	38	3		3	DKK2	4	107956733	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1068340	107956733	83197543	299	50914											
AGXT2L1	64850	broad.mit.edu	37	chr4	109668016	109668016	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccaatgcccctgcgagaGgtgaagaaaaacttgaccca	11	11	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109668016	A	A	109668016	1	1	47	0	1	0	0	0	0	0	0	0	406	1015	35	4		4	AGXT2L1	4	109668016	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1711283	109668016	81486260	300	50915											
ALPK1	80216	broad.mit.edu	37	chr4	113303646	113303646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggcagtacaaacaagccGtgggcccagaggacaaaaca	12	10	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113303646	T	T	113303646	3	4	47	1	0	0	0	0	1	0	0	0	544	1145	40	3	220	3	ALPK1	4	113303646	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3635630	113303646	77850630	301	50916											
ANK2	287	broad.mit.edu	37	chr4	114269241	114269241	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaatctataaactttgTacttaagccaatcttctttt	3	8	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114269241	C	C	114269241	1	2	47	0	1	0	0	0	0	0	0	0	621	1653	57	5		5	ANK2	4	114269241	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	965595	114269241	76885035	302	50917											
SYNPO2	171024	broad.mit.edu	37	chr4	119951385	119951385	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaagatggagatgttaccAgacaccacaggcaagggagc	13	9	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119951385	G	G	119951385	2	3	47	1	0	0	0	0	0	0	0	1	15576	175	7	5		5	SYNPO2	4	119951385	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5682144	119951385	71202891	303	50918											
USP53	54532	broad.mit.edu	37	chr4	120213653	120213653	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcttaatatagaaaattctGagagaacaggtttgcctttt	9	5	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120213653	A	A	120213653	3	1	47	1	0	0	0	0	1	0	0	0	17211	1291	45	4	2567	4	USP53	4	120213653	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	262268	120213653	70940623	304	50919											
TRPC3	7222	broad.mit.edu	37	chr4	122853688	122853688	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacttcgtatttctggcagTgcgccgccaggatgatgggg	14	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122853688	A	A	122853688	3	1	47	1	0	0	0	0	1	0	0	0	16704	1696	59	5	2084	5	TRPC3	4	122853688	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2640035	122853688	68300588	305	50920											
FAT4	79633	broad.mit.edu	37	chr4	126319898	126319898	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaattggtatcttgcagacAcgtgggagtcattcacacat	9	8	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126319898	C	C	126319898	1	2	47	0	1	0	0	0	0	0	0	0	5749	174	6	5		5	FAT4	4	126319898	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3466210	126319898	64834378	306	50921											
PCDH10	57575	broad.mit.edu	37	chr4	134072408	134072408	+	Frame_Shift_Del	DEL	G	-	-													gaagcggtgagtgagggcgcGgcgcccggcactgtggtggc							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134072408	-	-	134072408	7	5	47	1	0	1	0	1	0	0	0	0	11601	1103	39	0	1115	0	PCDH10	4	134072408	Frame_Shift_Del	DEL	G	TCGA-17-Z014-01A-01W-0746-08	7752510	134072408	57081868	307	50922											
PCDH18	54510	broad.mit.edu	37	chr4	138451915	138451915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcactgtagagagactgGgtgtccccctgtcctcagcg	12	12	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138451915	T	T	138451915	3	4	47	1	0	0	0	0	1	0	0	0	11607	1232	43	2	2095	2	PCDH18	4	138451915	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4379507	138451915	52702361	308	50923											
RNF150	57484	broad.mit.edu	37	chr4	141789440	141789440	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcacttcttcacagtccTggtcagtggaaagttctaca	7	10	5	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141789440	G	G	141789440	3	3	47	1	0	0	0	0	1	0	0	0	13562	1580	55	5	28	5	RNF150	4	141789440	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3337525	141789440	49364836	309	50924											
FNIP2	57600	broad.mit.edu	37	chr4	159791535	159791535	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcgggctactgccccacaTacatgcctgatcttgtgctt	10	13	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159791535	C	C	159791535	3	2	47	1	0	0	0	0	1	0	0	0	6034	1406	49	5	2917	5	FNIP2	4	159791535	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	18002095	159791535	31362741	310	50925											
MARCH1	55016	broad.mit.edu	37	chr4	165111430	165111430	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttatcagcaaactctatGgaagtgcaagccctctccca	6	14	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165111430	T	T	165111430	1	4	47	0	1	0	0	0	0	0	0	0	9390	1363	47	2		2	MARCH1	4	165111430	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5319895	165111430	26042846	311	50926											
TRIM60	166655	broad.mit.edu	37	chr4	165961707	165961707	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagaacgagttgaaaaagtGataattctgcaaggcagcaa	10	5	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165961707	A	A	165961707	2	1	47	1	0	0	0	0	0	0	0	1	16660	1277	45	4		4	TRIM60	4	165961707	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	850277	165961707	25192569	312	50927											
SPOCK3	50859	broad.mit.edu	37	chr4	167890889	167890889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatattacccagtctcaaGtagtcatttatagcagggtg	8	8	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167890889	T	T	167890889	1	4	47	0	1	0	0	0	0	0	0	0	15199	1044	36	3		3	SPOCK3	4	167890889	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1929182	167890889	23263387	313	50928											
DDX60	55601	broad.mit.edu	37	chr4	169167914	169167914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggacactaacatgcaactaCatagtgcttaggaaatttgc	8	9	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169167914	A	A	169167914	1	1	47	0	1	0	0	0	0	0	0	0	4411	493	17	3		3	DDX60	4	169167914	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1277025	169167914	21986362	314	50929											
PALLD	23022	broad.mit.edu	37	chr4	169589483	169589483	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttggctacgaatcccagcGgctcagacacaacatctgct	9	13	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169589483	C	C	169589483	3	2	47	1	0	0	0	0	1	0	0	0	11501	1116	39	4	1057	4	PALLD	4	169589483	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	421569	169589483	21564793	315	50930											
NEK1	4750	broad.mit.edu	37	chr4	170323054	170323054	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtttcaaacatactgaAatttaccaagttaaacaact	3	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170323054	C	C	170323054	1	2	47	0	1	0	0	0	0	0	0	0	10416	29	1	5		5	NEK1	4	170323054	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	733571	170323054	20831222	316	50931											
NEK1	4750	broad.mit.edu	37	chr4	170520373	170520373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatataaacattacagtcCacttttaaaaacgtacatca	2	8	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170520373	A	A	170520373	1	1	47	0	1	0	0	0	0	0	0	0	10416	609	21	2		2	NEK1	4	170520373	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	197319	170520373	20633903	317	50932											
GALNTL6	442117	broad.mit.edu	37	chr4	173150762	173150762	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttacctaccatgcaaaAggaaatacctcctttttatg	6	9	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173150762	G	G	173150762	1	3	47	0	1	0	0	0	0	0	0	0	6287	87	3	5		5	GALNTL6	4	173150762	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2630389	173150762	18003514	318	50933											
GALNTL6	442117	broad.mit.edu	37	chr4	173883853	173883853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttatgcacttgtacttGgaacagttttccacctgctt	6	10	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173883853	T	T	173883853	1	4	47	0	1	0	0	0	0	0	0	0	6287	1363	47	2		2	GALNTL6	4	173883853	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	733091	173883853	17270423	319	50934											
WDR17	116966	broad.mit.edu	37	chr4	177041039	177041039	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccctgcttctcttagttGgtgctggaatgcagaggatg	13	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177041039	A	A	177041039	4	1	47	1	0	0	0	0	0	1	0	0	17404	1357	47	4	415	4	WDR17	4	177041039	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3157186	177041039	14113237	320	50935											
FAT1	2195	broad.mit.edu	37	chr4	187557156	187557156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtaacccatacggacaaCgaaaatgagggggaatgctt	12	7	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187557156	A	A	187557156	1	1	47	0	1	0	0	0	0	0	0	0	5746	551	19	3		3	FAT1	4	187557156	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	10516117	187557156	3597120	321	50936											
LPCAT1	79888	broad.mit.edu	37	chr5	1474215	1474215	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagatctttttcaagcttttCtggttttagcctagacaaaa	6	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1474215	A	A	1474215	4	1	47	1	0	0	0	0	0	1	0	0	8997	922	32	3	584	3	LPCAT1	5	1474215	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08		1474215	179441045	322	50937											
ADAMTS16	170690	broad.mit.edu	37	chr5	5191963	5191963	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccttactggatgatttccAtggaaatattgactcatcaa	6	8	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5191963	T	T	5191963	1	4	47	0	1	0	0	0	0	0	0	0	261	232	8	5		5	ADAMTS16	5	5191963	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3717748	5191963	175723297	323	50938											
ADAMTS16	170690	broad.mit.edu	37	chr5	5237292	5237292	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcctgtagaggctagaaaGactggacatatgagacaagc	11	8	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5237292	C	C	5237292	1	2	47	0	1	0	0	0	0	0	0	0	261	957	33	4		4	ADAMTS16	5	5237292	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	45329	5237292	175677968	324	50939											
ADAMTS16	170690	broad.mit.edu	37	chr5	5263029	5263029	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagtggagaagcaaagggGacaagagctgcctggacaag	15	7	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5263029	T	T	5263029	1	4	47	0	1	0	0	0	0	0	0	0	261	1189	41	3		3	ADAMTS16	5	5263029	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	25737	5263029	175652231	325	50940											
KIAA0947	23379	broad.mit.edu	37	chr5	5464978	5464978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaacgtctacactgagaaGtgctaaaagactgcgcctgg	11	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5464978	T	T	5464978	3	4	47	1	0	0	0	0	1	0	0	0	8272	1029	36	3	5581	3	KIAA0947	5	5464978	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	201949	5464978	175450282	326	50941											
MTRR	4552	broad.mit.edu	37	chr5	7873438	7873438	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgctgagttaaatcaAaaatgcatgtagtgttaggt	10	4	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7873438	C	C	7873438	1	2	47	0	1	0	0	0	0	0	0	0	10055	29	1	5		5	MTRR	5	7873438	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2408460	7873438	173041822	327	50942											
SEMA5A	9037	broad.mit.edu	37	chr5	9119214	9119214	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgatcccacaggtagtgctGcagggagaccacgaggtcca	13	13	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9119214	A	A	9119214	2	1	47	1	0	0	0	0	0	0	0	1	14150	1311	46	4		4	SEMA5A	5	9119214	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1245776	9119214	171796046	328	50943											
DAP	1611	broad.mit.edu	37	chr5	10683510	10683510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgcggcaatgaagagagcCatggccacagaggagatgag	15	8	0	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10683510	A	A	10683510	1	1	47	0	1	0	0	0	0	0	0	0	4266	609	21	2		2	DAP	5	10683510	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1564296	10683510	170231750	329	50944											
CDH12	1010	broad.mit.edu	37	chr5	21883263	21883263	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attggcaatatcatctctgaTgcaatgaaaaaggttggaag	10	5	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883263	A	A	21883263	1	1	47	0	1	0	0	0	0	0	0	0	3128	1479	51	5		5	CDH12	5	21883263	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	11199753	21883263	159031997	330	50945											
RNASEN	29102	broad.mit.edu	37	chr5	31422762	31422762	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacactgaggtctgtctgctCacccatctcacaatgtgact	7	14	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422762	A	A	31422762	1	1	47	0	1	0	0	0	0	0	0	0	13528	841	29	3		3	RNASEN	5	31422762	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9539499	31422762	149492498	331	50946											
NPR3	4883	broad.mit.edu	37	chr5	32774641	32774641	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggggaagggttttccccTctgagccatgccaggaaagt	13	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32774641	C	C	32774641	1	2	47	0	1	0	0	0	0	0	0	0	10691	1566	54	5		5	NPR3	5	32774641	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1351879	32774641	148140619	332	50947											
RXFP3	51289	broad.mit.edu	37	chr5	33937928	33937928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcggtgcccttcagccaGgagtatttcctgtgccaggt	12	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33937928	T	T	33937928	3	4	47	1	0	0	0	0	1	0	0	0	13872	991	35	2	1085	2	RXFP3	5	33937928	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1163287	33937928	146977332	333	50948											
C7	730	broad.mit.edu	37	chr5	40966390	40966390	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctttctctctgaatccccAaagtccattgcatcagtctt	4	15	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40966390	G	G	40966390	1	3	47	0	1	0	0	0	0	0	0	0	2400	145	5	5		5	C7	5	40966390	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	7028462	40966390	139948870	334	50949											
CCL28	56477	broad.mit.edu	37	chr5	43381991	43381991	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttttatggccgtatgtttCgtgtttcccctgatgtgccc	10	10	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43381991	A	A	43381991	4	1	47	1	0	0	0	0	0	1	0	0	2928	893	31	3	32	3	CCL28	5	43381991	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2415601	43381991	137533269	335	50950											
ISL1	3670	broad.mit.edu	37	chr5	50686974	50686974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatatccgtaggtacggcGgattaactgagtcaataaag	10	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50686974	T	T	50686974	1	4	47	0	1	0	0	0	0	0	0	0	7926	1131	39	1		1	ISL1	5	50686974	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	7304983	50686974	130228286	336	50951											
ISL1	3670	broad.mit.edu	37	chr5	50689292	50689292	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttttatgaatactattcCagtgtcctttatttatttct	3	7	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50689292	G	G	50689292	1	3	47	0	1	0	0	0	0	0	0	0	7926	609	21	4		4	ISL1	5	50689292	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2318	50689292	130225968	337	50952											
ADAMTS6	11174	broad.mit.edu	37	chr5	64587275	64587275	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgcttgggaggctcattatCaaggcaagtaccacggcctg	12	11	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64587275	A	A	64587275	3	1	47	1	0	0	0	0	1	0	0	0	270	826	29	3	2020	3	ADAMTS6	5	64587275	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	13897983	64587275	116327985	338	50953											
ERBB2IP	55914	broad.mit.edu	37	chr5	65288517	65288517	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatatgtatgttttaaatttCtttttattcgaatattgcag	5	3	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65288517	T	T	65288517	1	4	47	0	1	0	0	0	0	0	0	0	5249	928	32	4		4	ERBB2IP	5	65288517	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	701242	65288517	115626743	339	50954											
FCHO2	115548	broad.mit.edu	37	chr5	72317062	72317062	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactgatcttctttatctcCtcaagctcttcatcccacag	3	14	6	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72317062	T	T	72317062	1	4	47	0	1	0	0	0	0	0	0	0	5845	696	24	4		4	FCHO2	5	72317062	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	7028545	72317062	108598198	340	50955											
SV2C	22987	broad.mit.edu	37	chr5	75449124	75449124	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtaaaatgttgaccaccCtacccttcctgatattgtac	5	12	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75449124	T	T	75449124	1	4	47	0	1	0	0	0	0	0	0	0	15537	696	24	4		4	SV2C	5	75449124	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3132062	75449124	105466136	341	50956											
GPR98	84059	broad.mit.edu	37	chr5	89943647	89943647	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataagatgaaattaagcacTgcagtccaataatgaggaca	8	6	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89943647	A	A	89943647	1	1	47	0	1	0	0	0	0	0	0	0	6787	1595	55	5		5	GPR98	5	89943647	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	14494523	89943647	90971613	342	50957											
GPR98	84059	broad.mit.edu	37	chr5	90079719	90079719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagcggtccttgggcgcCacctagtgagcagaatcata	14	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90079719	A	A	90079719	3	1	47	1	0	0	0	0	1	0	0	0	6787	594	21	2	13764	2	GPR98	5	90079719	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	136072	90079719	90835541	343	50958											
MEGF10	84466	broad.mit.edu	37	chr5	126653766	126653766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactttgctctcagtaatGggatcagtaaatatgattag	9	5	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126653766	T	T	126653766	1	4	47	0	1	0	0	0	0	0	0	0	9553	1363	47	2		2	MEGF10	5	126653766	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	36574047	126653766	54261494	344	50959											
FBN2	2201	broad.mit.edu	37	chr5	127670448	127670448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcttcactgagtaaccCagctgacagtggcaaatgaa	8	12	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127670448	A	A	127670448	2	1	47	1	0	0	0	0	0	0	0	1	5760	581	21	2		2	FBN2	5	127670448	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1016682	127670448	53244812	345	50960											
FBN2	2201	broad.mit.edu	37	chr5	127697428	127697428	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcttaccttcacaggtctCtgtctcagtcctgaacacat	6	14	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127697428	A	A	127697428	4	1	47	1	0	0	0	0	0	1	0	0	5760	922	32	3	6384	3	FBN2	5	127697428	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	26980	127697428	53217832	346	50961											
SLC27A6	28965	broad.mit.edu	37	chr5	128320947	128320947	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaactgagcacctcaccTgatgagcccgtgccacgcag	10	14	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128320947	A	A	128320947	2	1	47	1	0	0	0	0	0	0	0	1	14644	1567	55	5		5	SLC27A6	5	128320947	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	623519	128320947	52594313	347	50962											
CHSY3	337876	broad.mit.edu	37	chr5	129327493	129327493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggattcctgtttgagattGggaatcagggaagcagataa	14	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129327493	T	T	129327493	1	4	47	0	1	0	0	0	0	0	0	0	3444	1363	47	2		2	CHSY3	5	129327493	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1006546	129327493	51587767	348	50963											
KLHL3	26249	broad.mit.edu	37	chr5	137065603	137065603	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatttacacacaggttaccAgagagccccatactcttcat	5	14	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137065603	T	T	137065603	1	4	47	0	1	0	0	0	0	0	0	0	8454	203	7	5		5	KLHL3	5	137065603	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	7738110	137065603	43849657	349	50964											
PCDHA3	56145	broad.mit.edu	37	chr5	140182233	140182233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcgcgggacgcggacgCgcaggagaacgccctggtgt	18	12	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140182233	A	A	140182233	3	1	47	1	0	0	0	0	1	0	0	0	11619	768	27	3	1453	3	PCDHA3	5	140182233	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3116630	140182233	40733027	350	50965											
PCDHB8	56128	broad.mit.edu	37	chr5	140559700	140559701	+	Missense_Mutation	DNP	GG	TT	TT													gtctacctggtggtggcgttGgcctcggtgtcttcgctctt							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	140559701	TT	TT	140559700	3	4	47	1	0	0	0	0	1	0	0	0	11642	1339	47	2	2087	2	PCDHB8	5	140559700	Missense_Mutation	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	377467	140559700	40355560	351	50966											
PCDHB12	56124	broad.mit.edu	37	chr5	140590654	140590654	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggccccggtcggtcgctgCtcggtgcctgagggcccctt	16	16	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140590654	T	T	140590654	2	4	47	1	0	0	0	0	0	0	0	1	11631	805	28	4		4	PCDHB12	5	140590654	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	30954	140590654	40324606	352	50967											
GLRA1	2741	broad.mit.edu	37	chr5	151271916	151271916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatatccggaggttctcCccattagcttatccaggaaa	7	12	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151271916	A	A	151271916	3	1	47	1	0	0	0	0	1	0	0	0	6518	623	22	2	1265	2	GLRA1	5	151271916	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	10681262	151271916	29643344	353	50968											
LARP1	23367	broad.mit.edu	37	chr5	154173195	154173195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattacaaatagacatgaaGcctgaagtgcccagagagaa	9	9	0	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154173195	T	T	154173195	3	4	47	1	0	0	0	0	1	0	0	0	8700	962	34	3	567	3	LARP1	5	154173195	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2901279	154173195	26742065	354	50969											
EBF1	1879	broad.mit.edu	37	chr5	158440723	158440723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggactttagcttaacaCccccacccatccctatcggc	5	16	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158440723	A	A	158440723	1	1	47	0	1	0	0	0	0	0	0	0	4920	522	18	3		3	EBF1	5	158440723	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4267528	158440723	22474537	355	50970											
SLIT3	6586	broad.mit.edu	37	chr5	168149935	168149935	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacagcatctcagtgtactCacagagtggagaggtgagac	12	9	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168149935	A	A	168149935	1	1	47	0	1	0	0	0	0	0	0	0	14855	841	29	3		3	SLIT3	5	168149935	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9709212	168149935	12765325	356	50971											
DOCK2	1794	broad.mit.edu	37	chr5	169469081	169469081	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcacccccagacacaccGgcagctgaaggagacgctct	11	16	1	3	rs145262338		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169469081	A	A	169469081	3	1	47	1	0	0	0	0	1	0	0	0	4727	1116	39	4	3971	4	DOCK2	5	169469081	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1319146	169469081	11446179	357	50972											
FAM153B	202134	broad.mit.edu	37	chr5	175526052	175526052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcatccaaaccaacggtaCgtattctgggatcacctttt	8	11	2	0	rs138137150	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175526052	T	T	175526052	1	4	47	0	1	0	0	0	0	0	0	0	5507	551	19	4		4	FAM153B	5	175526052	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6056971	175526052	5389208	358	50973											
FAM153A	285596	broad.mit.edu	37	chr5	177156557	177156557	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggtcttccaggtcacCtaggaaacagagtcgctata	9	12	2	1	rs147363353		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177156557	A	A	177156557	5	1	47	1	0	0	0	0	0	0	1	0	5506	695	24	2	321	2	FAM153A	5	177156557	Splice_Site	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1630505	177156557	3758703	359	50974											
COL23A1	91522	broad.mit.edu	37	chr5	177669471	177669471	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttaccggctcatctctgttCctctcccatccacacgccca	5	19	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177669471	T	T	177669471	1	4	47	0	1	0	0	0	0	0	0	0	3714	870	30	4		4	COL23A1	5	177669471	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	512914	177669471	3245789	360	50975											
ZNF354B	117608	broad.mit.edu	37	chr5	178309722	178309722	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttcaggatgtaagagcaCacctaaaatgacaaagtcaa	7	7	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178309722	T	T	178309722	3	4	47	1	0	0	0	0	1	0	0	0	17991	478	17	4	283	4	ZNF354B	5	178309722	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	640251	178309722	2605538	361	50976											
RASGEF1C	255426	broad.mit.edu	37	chr5	179529113	179529113	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtttggttctctgggCtctcactttcgtaagaagcc	9	10	3	1	rs139061980		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179529113	T	T	179529113	3	4	47	1	0	0	0	0	1	0	0	0	13179	797	28	4	74	4	RASGEF1C	5	179529113	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1219391	179529113	1386147	362	50977											
BTNL9	153579	broad.mit.edu	37	chr5	180482343	180482343	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgattagcagtggcttaaGactaaggaagctcttcccag	11	8	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180482343	T	T	180482343	1	4	47	0	1	0	0	0	0	0	0	0	1578	957	33	3		3	BTNL9	5	180482343	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	953230	180482343	432917	363	50978											
FARS2	10667	broad.mit.edu	37	chr6	5750405	5750405	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagcatggcaatgccagggGaatacctagaagagtggggc	15	8	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5750405	T	T	5750405	1	4	47	0	1	0	0	0	0	0	0	0	5735	1189	41	3		3	FARS2	6	5750405	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08		5750405	165364662	364	50979											
SYCP2L	221711	broad.mit.edu	37	chr6	10887382	10887382	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaagcggtgagtgacccccGaagggcccggaccttctgtc	14	14	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10887382	A	A	10887382	1	1	47	0	1	0	0	0	0	0	0	0	15552	1073	37	4		4	SYCP2L	6	10887382	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5136977	10887382	160227685	365	50980											
DCDC2	51473	broad.mit.edu	37	chr6	24178641	24178641	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attattaacctgctgcagctCctcaccattctcctcatcgg	5	15	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24178641	T	T	24178641	3	4	47	1	0	0	0	0	1	0	0	0	4318	864	30	4	195	4	DCDC2	6	24178641	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	13291259	24178641	146936426	366	50981											
LRRC16A	55604	broad.mit.edu	37	chr6	25450201	25450201	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgtgggacagccagacCgtggctgagcagggcccctg	17	13	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25450201	T	T	25450201	2	4	47	1	0	0	0	0	0	0	0	1	9058	639	23	4		4	LRRC16A	6	25450201	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1271560	25450201	145664866	367	50982											
HIST1H2AE	3012	broad.mit.edu	37	chr6	26217142	26217142	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctagcttcttattcctccatCgagcccattctttttcttta	3	13	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26217142	T	T	26217142	1	4	47	0	1	0	0	0	0	0	0	0	7199	899	31	4		4	HIST1H2AE	6	26217142	5'Flank	SNP	C	TCGA-17-Z014-01A-01W-0746-08	766941	26217142	144897925	368	50983											
GPX6	257202	broad.mit.edu	37	chr6	28473455	28473455	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcatttctagctaacccatCcatgccaggtttatactcat	5	12	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28473455	T	T	28473455	1	4	47	0	1	0	0	0	0	0	0	0	6810	870	30	4		4	GPX6	6	28473455	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2256313	28473455	142641612	369	50984											
GPX6	257202	broad.mit.edu	37	chr6	28478622	28478622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattggatgtactcctcgccGttgagggtgagggctccata	13	9	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28478622	T	T	28478622	3	4	47	1	0	0	0	0	1	0	0	0	6810	1136	40	3	534	3	GPX6	6	28478622	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5167	28478622	142636445	370	50985											
OR11A1	26531	broad.mit.edu	37	chr6	29399823	29399823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaccctccactcctgagCcattttctcttccaccctcc	3	19	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29399823	A	A	29399823	1	1	47	0	1	0	0	0	0	0	0	0	11018	754	26	3		3	OR11A1	6	29399823	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	921201	29399823	141715244	371	50986											
MAS1L	116511	broad.mit.edu	37	chr6	29455361	29455361	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggatgtataccatgtaggGattcgtggccccacagcaaa	12	9	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29455361	A	A	29455361	3	1	47	1	0	0	0	0	1	0	0	0	9413	1174	41	4	819	4	MAS1L	6	29455361	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	55538	29455361	141659706	372	50987											
LTA	4049	broad.mit.edu	37	chr6	31540548	31540548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaacgtctcttcctccCaagggtgtgtggcaccaccc	9	16	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31540548	A	A	31540548	3	1	47	1	0	0	0	0	1	0	0	0	9155	594	21	2	31	2	LTA	6	31540548	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2085187	31540548	139574519	373	50988											
VARS	7407	broad.mit.edu	37	chr6	31750279	31750279	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgaggagccctccatctTcctcccgtcccaggccccca	7	22	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31750279	A	A	31750279	1	1	47	0	1	0	0	0	0	0	0	0	17250	1798	62	5		5	VARS	6	31750279	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	209731	31750279	139364788	374	50989											
PACSIN1	29993	broad.mit.edu	37	chr6	34497109	34497109	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcaggggaggagttaaTgggtgaccatgtttgctgct	18	5	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34497109	G	G	34497109	1	3	47	0	1	0	0	0	0	0	0	0	11468	1479	51	5		5	PACSIN1	6	34497109	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2746830	34497109	136617958	375	50990											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34824255	34824255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatctttgaataacagtggAgataaagcaagaactagcta	8	5	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34824255	T	T	34824255	1	4	47	0	1	0	0	0	0	0	0	0	17094	319	11	5		5	UHRF1BP1	6	34824255	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	327146	34824255	136290812	376	50991											
DNAH8	1769	broad.mit.edu	37	chr6	38828271	38828271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctactgactttgaatgGctaaaacagagtagatttta	7	7	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38828271	T	T	38828271	3	4	47	1	0	0	0	0	1	0	0	0	4647	1212	42	3	5500	3	DNAH8	6	38828271	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4004016	38828271	132286796	377	50992											
TREML2	79865	broad.mit.edu	37	chr6	41166027	41166027	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccagactcgggcaaagcCaggctcacacttcttcttcc	7	17	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41166027	G	G	41166027	3	3	47	1	0	0	0	0	1	0	0	0	16597	594	21	4	785	4	TREML2	6	41166027	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2337756	41166027	129949040	378	50993											
UBR2	23304	broad.mit.edu	37	chr6	42626495	42626495	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagcggcattttattgatGaaaacaaagaactctttcag	8	7	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42626495	A	A	42626495	3	1	47	1	0	0	0	0	1	0	0	0	17028	1291	45	4	3435	4	UBR2	6	42626495	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1460468	42626495	128488572	379	50994											
ZNF318	24149	broad.mit.edu	37	chr6	43305759	43305759	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctagggccttgctttctaTtgtcactgttaactctggat	8	9	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43305759	A	A	43305759	3	1	47	1	0	0	0	0	1	0	0	0	17962	1493	52	5	866	5	ZNF318	6	43305759	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	679264	43305759	127809308	380	50995											
MUT	4594	broad.mit.edu	37	chr6	49426988	49426988	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttatagagatcccttcCggggtgtgccatattaggtc	12	8	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49426988	A	A	49426988	2	1	47	1	0	0	0	0	0	0	0	1	10085	639	23	1		1	MUT	6	49426988	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6121229	49426988	121688079	381	50996											
TRAM2	9697	broad.mit.edu	37	chr6	52369391	52369391	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagggccctggcactcaccaGattccctcttgatgagcctg	10	14	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52369391	C	C	52369391	3	2	47	1	0	0	0	0	1	0	0	0	16577	942	33	4	83	4	TRAM2	6	52369391	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2942403	52369391	118745676	382	50997											
GSTA3	2940	broad.mit.edu	37	chr6	52766960	52766960	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctagaatcacactcacctGaaccctcctcacgttcactg	4	16	5	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52766960	T	T	52766960	1	4	47	0	1	0	0	0	0	0	0	0	6898	1305	45	3		3	GSTA3	6	52766960	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	397569	52766960	118348107	383	50998											
DST	667	broad.mit.edu	37	chr6	56457000	56457000	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggtctcttctaattgccTttgaagatttttggggtcca	9	8	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56457000	C	C	56457000	3	2	47	1	0	0	0	0	1	0	0	0	4823	1608	56	5	10721	5	DST	6	56457000	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3690040	56457000	114658067	384	50999											
PRIM2	5558	broad.mit.edu	37	chr6	57512785	57512785	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaaaagtgttgcactcTgttgtgtaattgtgacacaa	10	5	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512785	A	A	57512785	1	1	47	0	1	0	0	0	0	0	0	0	12597	1595	55	5		5	PRIM2	6	57512785	3'UTR	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1055785	57512785	113602282	385	51000											
COL19A1	1310	broad.mit.edu	37	chr6	70637972	70637972	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagttttccttgtgtaattaAgccaggtgaattatttgaac	8	5	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70637972	C	C	70637972	1	2	47	0	1	0	0	0	0	0	0	0	3708	87	3	5		5	COL19A1	6	70637972	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	13125187	70637972	100477095	386	51001											
COL19A1	1310	broad.mit.edu	37	chr6	70856740	70856740	+	Frame_Shift_Del	DEL	G	-	-													caggtgttcacggttccccaGgggacataggcccacaaggg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70856740	-	-	70856740	7	5	47	1	0	1	0	1	0	0	0	0	3708	1000	35	0	1954	0	COL19A1	6	70856740	Frame_Shift_Del	DEL	G	TCGA-17-Z014-01A-01W-0746-08	218768	70856740	100258327	387	51002											
MAP3K7	6885	broad.mit.edu	37	chr6	91226181	91226181	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttccttaaaaaaaaagtCtttctttgcatatttcaaaa	2	8	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91226181	A	A	91226181	1	1	47	0	1	0	0	0	0	0	0	0	9347	928	32	3		3	MAP3K7	6	91226181	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	20369441	91226181	79888886	388	51003											
HACE1	57531	broad.mit.edu	37	chr6	105192075	105192075	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaagaactctctcctcttGagtaatgtcttctacaactt	6	10	4	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105192075	A	A	105192075	4	1	47	1	0	0	0	0	0	1	0	0	7006	1299	45	4	268	4	HACE1	6	105192075	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	13965894	105192075	65922992	389	51004											
RSPH4A	345895	broad.mit.edu	37	chr6	116951425	116951425	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgttccaaaacattcatGaagtaccctcctgattttgt	5	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116951425	T	T	116951425	1	4	47	0	1	0	0	0	0	0	0	0	13817	1305	45	3		3	RSPH4A	6	116951425	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	11759350	116951425	54163642	390	51005											
TRDN	10345	broad.mit.edu	37	chr6	123539833	123539833	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgaaaggaaactgaaaTccatagccattgtacccatc	9	9	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123539833	C	C	123539833	2	2	47	1	0	0	0	0	0	0	0	1	16592	1422	50	5		5	TRDN	6	123539833	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	6588408	123539833	47575234	391	51006											
VNN1	8876	broad.mit.edu	37	chr6	133020255	133020255	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatcaatagaagaggaaaggGatgtcccattggcaactgat	11	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133020255	A	A	133020255	1	1	47	0	1	0	0	0	0	0	0	0	17309	1189	41	4		4	VNN1	6	133020255	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	9480422	133020255	38094812	392	51007											
VNN2	8875	broad.mit.edu	37	chr6	133072677	133072677	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgtgaatgaaagacaagtCttctaaaaacaacaccacac	5	11	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133072677	A	A	133072677	1	1	47	0	1	0	0	0	0	0	0	0	17310	928	32	3		3	VNN2	6	133072677	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	52422	133072677	38042390	393	51008											
IL20RA	53832	broad.mit.edu	37	chr6	137330566	137330566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccacttctctggagctGtcaggacaacagaaatggac	9	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137330566	T	T	137330566	3	4	47	1	0	0	0	0	1	0	0	0	7738	1377	48	3	1210	3	IL20RA	6	137330566	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4257889	137330566	33784501	394	51009											
KIAA1244	57221	broad.mit.edu	37	chr6	138530886	138530886	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagccactgccctggccgcAtttttctttttaacggcaca	8	13	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138530886	G	G	138530886	1	3	47	0	1	0	0	0	0	0	0	0	8287	232	8	5		5	KIAA1244	6	138530886	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1200320	138530886	32584181	395	51010											
OPRM1	4988	broad.mit.edu	37	chr6	154339016	154339017	+	Intron	INS	-	G	G													ataactgtgctgtttcctttINStcatctacccactcaaacca					rs142631227	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154339017	G	G	154339016	6	5	47	0	1	1	1	0	0	0	0	0	10981	1856	64	0		0	OPRM1	6	154339016	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	15808130	154339016	16776051	396	51011											
RBM16	22828	broad.mit.edu	37	chr6	155129873	155129873	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggtctttgaacaAgaagctaagaaagtggcggt	15	4	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155129873	G	G	155129873	2	3	47	1	0	0	0	0	0	0	0	1	13226	69	3	5		5	RBM16	6	155129873	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	790857	155129873	15985194	397	51012											
TULP4	56995	broad.mit.edu	37	chr6	158923886	158923886	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcgcctccccgttggcctCccagtcctcctacagcctcc	7	22	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158923886	T	T	158923886	3	4	47	1	0	0	0	0	1	0	0	0	16902	855	30	4	3241	4	TULP4	6	158923886	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3794013	158923886	12191181	398	51013											
FNDC1	84624	broad.mit.edu	37	chr6	159688877	159688877	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagctggggaagaggtgaaGaccattgccaatttgtggat	14	6	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159688877	A	A	159688877	3	1	47	1	0	0	0	0	1	0	0	0	6026	942	33	4	5574	4	FNDC1	6	159688877	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	764991	159688877	11426190	399	51014											
PLG	5340	broad.mit.edu	37	chr6	161132805	161132805	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagatcaaagatgactatGtttgggactgaagtaagcat	10	4	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161132805	A	A	161132805	1	1	47	0	1	0	0	0	0	0	0	0	12181	1392	48	4		4	PLG	6	161132805	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1443928	161132805	9982262	400	51015											
PARK2	5071	broad.mit.edu	37	chr6	161954962	161954962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttataaggtaggaaggctgTatattcacacgacactcgcc	9	9	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161954962	A	A	161954962	1	1	47	0	1	0	0	0	0	0	0	0	11543	1653	57	5		5	PARK2	6	161954962	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	822157	161954962	9160105	401	51016											
PARK2	5071	broad.mit.edu	37	chr6	161973117	161973117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcactgctgggcggcacCcaggccctcctgaggtcaga	13	14	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161973117	A	A	161973117	1	1	47	0	1	0	0	0	0	0	0	0	11543	638	22	2		2	PARK2	6	161973117	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	18155	161973117	9141950	402	51017											
WIPI2	26100	broad.mit.edu	37	chr7	5266848	5266848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctggaccgggtacttcGggaaagtgctcatggcctcc	12	14	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5266848	T	T	5266848	3	4	47	1	0	0	0	0	1	0	0	0	17498	1116	39	1	958	1	WIPI2	7	5266848	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08		5266848	153871815	403	51018											
AGR2	10551	broad.mit.edu	37	chr7	16840928	16840928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctttgagggagctctgagTaatcctgatctttaccttgt	10	8	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16840928	A	A	16840928	1	1	47	0	1	0	0	0	0	0	0	0	395	1653	57	5		5	AGR2	7	16840928	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	11574080	16840928	142297735	404	51019											
HDAC9	9734	broad.mit.edu	37	chr7	19015566	19015566	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaacagccctttgctcagGaagacagcaggtatgaatcc	11	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19015566	T	T	19015566	4	4	47	1	0	0	0	0	0	1	0	0	7081	1175	41	3	3390	3	HDAC9	7	19015566	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2174638	19015566	140123097	405	51020											
ABCB5	340273	broad.mit.edu	37	chr7	20689653	20689653	+	Translation_Start_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acattccaatagattctgaaAggtctgaatctcagaattaa	6	7	3	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20689653	T	T	20689653	1	4	47	1	0	0	0	0	0	0	0	0	44	69	3	5		5	ABCB5	7	20689653	Translation_Start_Site	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1674087	20689653	138449010	406	51021											
DNAH11	8701	broad.mit.edu	37	chr7	21784037	21784037	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctgaattaaaggtattttCcccattcttgccttgtaggg	8	9	2	1	rs729657	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21784037	A	A	21784037	1	1	47	0	1	0	0	0	0	0	0	0	4639	870	30	3		3	DNAH11	7	21784037	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1094384	21784037	137354626	407	51022											
MPP6	51678	broad.mit.edu	37	chr7	24703431	24703431	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtcaggaagaatattagcAtttgttacaatgatttttcc	7	5	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24703431	G	G	24703431	1	3	47	0	1	0	0	0	0	0	0	0	9832	232	8	5		5	MPP6	7	24703431	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2919394	24703431	134435232	408	51023											
CRHR2	1395	broad.mit.edu	37	chr7	30695741	30695741	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccgatgtcccacgcacAcacctatcctacctgtcccc	5	19	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30695741	T	T	30695741	1	4	47	0	1	0	0	0	0	0	0	0	3904	174	6	5		5	CRHR2	7	30695741	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5992310	30695741	128442922	409	51024											
FAM188B	84182	broad.mit.edu	37	chr7	30915112	30915112	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttctctcatctgcaggaActtgtcaatctgctcctgac	6	14	5	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30915112	G	G	30915112	2	3	47	1	0	0	0	0	0	0	0	1	5561	40	2	5		5	FAM188B	7	30915112	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	219371	30915112	128223551	410	51025											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31117661	31117661	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcccgcccatgtgggtgaGatggtcctggtcagctgccc	14	13	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31117661	C	C	31117661	3	2	47	1	0	0	0	0	1	0	0	0	303	933	33	4	223	4	ADCYAP1R1	7	31117661	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	202549	31117661	128021002	411	51026											
C7orf16	10842	broad.mit.edu	37	chr7	31736479	31736479	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaagtttggaaagctataTtgactgtcttcaccagatgt	9	6	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31736479	A	A	31736479	1	1	47	0	1	0	0	0	0	0	0	0	2403	1508	52	5		5	C7orf16	7	31736479	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	618818	31736479	127402184	412	51027											
HECW1	23072	broad.mit.edu	37	chr7	43283608	43283608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccactcataatggaatgtGcctcagcctagggccattgc	9	13	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43283608	T	T	43283608	1	4	47	0	1	0	0	0	0	0	0	0	7109	1334	46	3		3	HECW1	7	43283608	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	11547129	43283608	115855055	413	51028											
DBNL	28988	broad.mit.edu	37	chr7	44098510	44098510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccctccaggagtctgccGtgcacccgagggagattttc	11	14	1	1	rs141421515	byFrequency	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44098510	T	T	44098510	3	4	47	1	0	0	0	0	1	0	0	0	4288	1145	40	3	824	3	DBNL	7	44098510	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	814902	44098510	115040153	414	51029											
MYL7	58498	broad.mit.edu	37	chr7	44178555	44178555	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctccatgggtgatgatgtAgcacagtgacttgtagtcga	13	7	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44178555	T	T	44178555	3	4	47	1	0	0	0	0	1	0	0	0	10147	420	15	5	38	5	MYL7	7	44178555	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	80045	44178555	114960108	415	51030											
IGFBP1	3484	broad.mit.edu	37	chr7	45930420	45930420	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcctggtcctgatgccCtggaaagaaatgcttttccc	8	13	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45930420	G	G	45930420	1	3	47	0	1	0	0	0	0	0	0	0	7648	696	24	4		4	IGFBP1	7	45930420	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1751865	45930420	113208243	416	51031											
GRB10	2887	broad.mit.edu	37	chr7	50672887	50672887	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacccaacatggcacccctCttgccaacccgcatagagct	6	19	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50672887	A	A	50672887	1	1	47	0	1	0	0	0	0	0	0	0	6822	928	32	3		3	GRB10	7	50672887	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4742467	50672887	108465776	417	51032											
COBL	23242	broad.mit.edu	37	chr7	51095701	51095701	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaccagctccctgctgcagGcctgagtgtcagatgtgtgt	13	11	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51095701	C	C	51095701	3	2	47	1	0	0	0	0	1	0	0	0	3685	1203	42	4	709	4	COBL	7	51095701	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	422814	51095701	108042962	418	51033											
ZNF716	441234	broad.mit.edu	37	chr7	57528449	57528450	+	Missense_Mutation	DNP	CC	AA	AA													gttacatgttctcatttcacCcaagaccttcagtcagagca							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	57528450	AA	AA	57528449	3	1	47	1	0	0	0	0	1	0	0	0	18247	610	22	2	296	2	ZNF716	7	57528449	Missense_Mutation	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	6432748	57528449	101610214	419	51034											
ZNF679	168417	broad.mit.edu	37	chr7	63720596	63720596	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgttgttgttattgtttttCagggactgttgacattcaga	10	4	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63720596	A	A	63720596	1	1	47	0	1	0	0	0	0	0	0	0	18213	841	29	3		3	ZNF679	7	63720596	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6192147	63720596	95418067	420	51035											
FGL2	10875	broad.mit.edu	37	chr7	76828787	76828787	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagtccgtttctgcctggGtctccgttgtcatcagcctg	10	13	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76828787	A	A	76828787	2	1	47	1	0	0	0	0	0	0	0	1	5930	1252	44	4		4	FGL2	7	76828787	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	13108191	76828787	82309876	421	51036											
SEMA3C	10512	broad.mit.edu	37	chr7	80380761	80380761	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttttattgctaagctttCataaaattttttaaaaagag	4	5	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80380761	A	A	80380761	1	1	47	0	1	0	0	0	0	0	0	0	14139	841	29	3		3	SEMA3C	7	80380761	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3551974	80380761	78757902	422	51037											
HGF	3082	broad.mit.edu	37	chr7	81346729	81346729	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaagatgctcattccatccAagagacacaaaatattacaa	4	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81346729	T	T	81346729	1	4	47	0	1	0	0	0	0	0	0	0	7152	145	5	5		5	HGF	7	81346729	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	965968	81346729	77791934	423	51038											
PCLO	27445	broad.mit.edu	37	chr7	82532040	82532040	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagatgtagtgcatagttttCccgttcatctgtataatcta	7	7	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82532040	G	G	82532040	2	3	47	1	0	0	0	0	0	0	0	1	11677	842	30	4		4	PCLO	7	82532040	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1185311	82532040	76606623	424	51039											
SEMA3A	10371	broad.mit.edu	37	chr7	83764303	83764303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaacattgggtattaatGtgaagcactatataagcata	8	5	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83764303	T	T	83764303	1	4	47	0	1	0	0	0	0	0	0	0	14137	1392	48	3		3	SEMA3A	7	83764303	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1232263	83764303	75374360	425	51040											
ABCB1	5243	broad.mit.edu	37	chr7	87323336	87323336	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcatggaattgactttcGggggagggctgtatcagtta	16	5	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87323336	C	C	87323336	1	2	47	0	1	0	0	0	0	0	0	0	40	1131	39	4		4	ABCB1	7	87323336	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3559033	87323336	71815327	426	51041											
HEPACAM2	253012	broad.mit.edu	37	chr7	92824983	92824983	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttagcttcccaaatctgGcaatgccattcattacggag	8	11	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92824983	A	A	92824983	1	1	47	0	1	0	0	0	0	0	0	0	7120	1218	42	4		4	HEPACAM2	7	92824983	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5501647	92824983	66313680	427	51042											
SHFM1	7979	broad.mit.edu	37	chr7	96318202	96318202	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctagaatgtattaagcaggtCaagtttaggttacttcaaca	8	6	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96318202	G	G	96318202	1	3	47	0	1	0	0	0	0	0	0	0	14391	841	29	4		4	SHFM1	7	96318202	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3493219	96318202	62820461	428	51043											
OCM2	4951	broad.mit.edu	37	chr7	97614339	97614339	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcagtggaggtggcttcGttctttacagacatgccgtg	15	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97614339	A	A	97614339	1	1	47	0	1	0	0	0	0	0	0	0	10917	1160	40	4		4	OCM2	7	97614339	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1296137	97614339	61524324	429	51044											
TRRAP	8295	broad.mit.edu	37	chr7	98560207	98560207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggggccctcaaggccGccgtctcctgtagactgcat	12	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98560207	T	T	98560207	1	4	47	0	1	0	0	0	0	0	0	0	16726	1102	38	3		3	TRRAP	7	98560207	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	945868	98560207	60578456	430	51045											
LRCH4	4034	broad.mit.edu	37	chr7	100176036	100176036	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttaccagggactgaaactCgggggccgagaaggggccag	16	10	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100176036	T	T	100176036	2	4	47	1	0	0	0	0	0	0	0	1	9022	871	31	4		4	LRCH4	7	100176036	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1615829	100176036	58962627	431	51046											
ZAN	7455	broad.mit.edu	37	chr7	100344279	100344279	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccttccactacatcctccgGggccagtctcctggtgcagc	9	17	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100344279	C	C	100344279	2	2	47	1	0	0	0	0	0	0	0	1	17640	1219	43	4		4	ZAN	7	100344279	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	168243	100344279	58794384	432	51047											
ZAN	7455	broad.mit.edu	37	chr7	100373017	100373017	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatggtagtaaccattctatCccggacgcctgcactcttgt	9	12	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100373017	T	T	100373017	2	4	47	1	0	0	0	0	0	0	0	1	17640	845	30	4		4	ZAN	7	100373017	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	28738	100373017	58765646	433	51048											
SLC26A4	5172	broad.mit.edu	37	chr7	107334933	107334933	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccttgcagaaggtataacCctgcttctctgcataccgat	7	13	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107334933	T	T	107334933	1	4	47	0	1	0	0	0	0	0	0	0	14633	638	22	4		4	SLC26A4	7	107334933	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6961916	107334933	51803730	434	51049											
LAMB4	22798	broad.mit.edu	37	chr7	107756444	107756444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaataaacaaagagccaaCccacctccaggtaactgagg	8	12	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107756444	A	A	107756444	1	1	47	0	1	0	0	0	0	0	0	0	8685	522	18	3		3	LAMB4	7	107756444	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	421511	107756444	51382219	435	51050											
C7orf66	154907	broad.mit.edu	37	chr7	108524368	108524368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacggcagttaaggtgccacGtctcacagtagggcaccagg	13	11	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108524368	T	T	108524368	1	4	47	0	1	0	0	0	0	0	0	0	2437	1160	40	3		3	C7orf66	7	108524368	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	767924	108524368	50614295	436	51051											
DOCK4	9732	broad.mit.edu	37	chr7	111409561	111409561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcaccccaggagggacCccgggcggggcagggccact	15	16	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111409561	A	A	111409561	1	1	47	0	1	0	0	0	0	0	0	0	4729	638	22	2		2	DOCK4	7	111409561	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2885193	111409561	47729102	437	51052											
MDFIC	29969	broad.mit.edu	37	chr7	114641774	114641775	+	Intron	INS	-	T	T													ttttaatcaagtgcctttgaINSttttttgttcctgttgcttt					rs147364626	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114641775	T	T	114641774	6	5	47	0	1	1	1	0	0	0	0	0	9498	348	12	0		0	MDFIC	7	114641774	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	3232213	114641774	44496889	438	51053											
CTTNBP2	83992	broad.mit.edu	37	chr7	117365197	117365197	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgctgtccttggctaggGtgtcttttagcagttgtctg	13	9	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117365197	A	A	117365197	2	1	47	1	0	0	0	0	0	0	0	1	4079	1252	44	4		4	CTTNBP2	7	117365197	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2723423	117365197	41773466	439	51054											
ANKRD7	56311	broad.mit.edu	37	chr7	117864521	117864521	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaggaaggtaggcattaGtttgcaagagttcaagccct	11	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117864521	T	T	117864521	1	4	47	0	1	0	0	0	0	0	0	0	686	1044	36	3		3	ANKRD7	7	117864521	5'Flank	SNP	G	TCGA-17-Z014-01A-01W-0746-08	499324	117864521	41274142	440	51055											
SPAM1	6677	broad.mit.edu	37	chr7	123593676	123593676	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagctttgttaaatcaAgtggagtatcccagatagtt	9	6	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123593676	C	C	123593676	3	2	47	1	0	0	0	0	1	0	0	0	15102	72	3	5	54	5	SPAM1	7	123593676	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5729155	123593676	35544987	441	51056											
CCDC136	64753	broad.mit.edu	37	chr7	128432408	128432408	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctaggctcctatgaggcTtccgagggctgtgagaggaa	14	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128432408	A	A	128432408	1	1	47	0	1	0	0	0	0	0	0	0	2796	1624	56	5		5	CCDC136	7	128432408	5'UTR	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4838732	128432408	30706255	442	51057											
NRF1	4899	broad.mit.edu	37	chr7	129317417	129317417	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctcatttgtgtctatgtcActgtaatttccgtcttttta	5	9	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129317417	T	T	129317417	1	4	47	0	1	0	0	0	0	0	0	0	10741	174	6	5		5	NRF1	7	129317417	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	885009	129317417	29821246	443	51058											
CPA2	1358	broad.mit.edu	37	chr7	129914980	129914980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcacattgccacacttgCttttgcagttcagcaccgga	8	13	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129914980	A	A	129914980	1	1	47	0	1	0	0	0	0	0	0	0	3822	812	28	3		3	CPA2	7	129914980	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	597563	129914980	29223683	444	51059											
AKR1B10	57016	broad.mit.edu	37	chr7	134221408	134221408	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctttctatgataggccatgGaggagctggtggatgagggg	17	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134221408	A	A	134221408	3	1	47	1	0	0	0	0	1	0	0	0	467	1175	41	4	454	4	AKR1B10	7	134221408	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4306428	134221408	24917255	445	51060											
NUP205	23165	broad.mit.edu	37	chr7	135323374	135323374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctaccttccagcatgctGtgtgtctcttcactcctagc	6	17	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135323374	T	T	135323374	3	4	47	1	0	0	0	0	1	0	0	0	10854	1377	48	3	5485	3	NUP205	7	135323374	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1101966	135323374	23815289	446	51061											
DGKI	9162	broad.mit.edu	37	chr7	137293542	137293542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatagaacatctaggttttgCccagccctgtaatgtgtaaa	8	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137293542	T	T	137293542	1	4	47	0	1	0	0	0	0	0	0	0	4511	754	26	4		4	DGKI	7	137293542	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1970168	137293542	21845121	447	51062											
DENND2A	27147	broad.mit.edu	37	chr7	140301849	140301849	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggtcctgtcccccgaCgttcactgctcctttattcc	7	17	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140301849	T	T	140301849	3	4	47	1	0	0	0	0	1	0	0	0	4469	536	19	4	2752	4	DENND2A	7	140301849	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3008307	140301849	18836814	448	51063											
TRPV5	56302	broad.mit.edu	37	chr7	142606565	142606565	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccccctcccctagacagGctaatgcaggctccaggacg	10	17	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142606565	A	A	142606565	1	1	47	0	1	0	0	0	0	0	0	0	16724	1218	42	4		4	TRPV5	7	142606565	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2304716	142606565	16532098	449	51064											
OR9A2	135924	broad.mit.edu	37	chr7	142723999	142724000	+	Frame_Shift_Ins	INS	-	T	T													catcatggggacaattatggINSttgtgaccaggatctccagg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142724000	T	T	142723999	7	5	47	1	0	1	1	0	0	0	0	0	11342	1261	44	0	715	0	OR9A2	7	142723999	Frame_Shift_Ins	INS	-	TCGA-17-Z014-01A-01W-0746-08	117434	142723999	16414664	450	51065											
CASP2	835	broad.mit.edu	37	chr7	142997119	142997119	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtggagggcgccatctAtggtgtggatgggaaactgc	18	6	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142997119	T	T	142997119	3	4	47	1	0	0	0	0	1	0	0	0	2697	449	16	5	877	5	CASP2	7	142997119	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	273120	142997119	16141544	451	51066											
CLCN1	1180	broad.mit.edu	37	chr7	143047738	143047738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctcaggggcgtcctggcCctggaggaggtaatcacgat	15	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143047738	T	T	143047738	2	4	47	1	0	0	0	0	0	0	0	1	3493	610	22	4		4	CLCN1	7	143047738	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	50619	143047738	16090925	452	51067											
OR2F1	26211	broad.mit.edu	37	chr7	143657464	143657464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgccctgcgatactcggCcatcatgcatggagggctgt	13	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143657464	A	A	143657464	3	1	47	1	0	0	0	0	1	0	0	0	11090	739	26	3	403	3	OR2F1	7	143657464	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	609726	143657464	15481199	453	51068											
OR2A7	401427	broad.mit.edu	37	chr7	143973506	143973506	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctgtccgtcgcatactcTggacattgttattgcagtcc	8	13	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143973506	C	C	143973506	3	2	47	1	0	0	0	0	1	0	0	0	11076	1595	55	5		5	OR2A7	7	143973506	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	316042	143973506	15165157	454	51069											
CNTNAP2	26047	broad.mit.edu	37	chr7	146182512	146182512	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgataccaattgagagatGaggaaagtcagctcagaggt	12	5	2	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146182512	A	A	146182512	1	1	47	0	1	0	0	0	0	0	0	0	3679	1305	45	4		4	CNTNAP2	7	146182512	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2209006	146182512	12956151	455	51070											
MLL3	58508	broad.mit.edu	37	chr7	151945112	151945112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcagaggaactaagagCtgaagggtaattatgcagca	12	7	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151945112	A	A	151945112	3	1	47	1	0	0	0	0	1	0	0	0	9715	797	28	3	12512	3	MLL3	7	151945112	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	5762600	151945112	7193551	456	51071											
DLGAP2	9228	broad.mit.edu	37	chr8	1624761	1624761	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggaataccactctgtcggGgtgcaagtggaagatgagaa	15	7	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1624761	T	T	1624761	2	4	47	1	0	0	0	0	0	0	0	1	4600	1219	43	2		2	DLGAP2	8	1624761	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08		1624761	144739261	457	51072											
ARHGEF10	9639	broad.mit.edu	37	chr8	1808302	1808302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcccctcctgctgcccGcctactccagcccggtcatc	7	22	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1808302	T	T	1808302	3	4	47	1	0	0	0	0	1	0	0	0	896	1087	38	3	443	3	ARHGEF10	8	1808302	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	183541	1808302	144555720	458	51073											
CSMD1	64478	broad.mit.edu	37	chr8	2975879	2975879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaatgtgctattatgccCatgaaacattaaatcgcccc	5	10	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2975879	A	A	2975879	1	1	47	0	1	0	0	0	0	0	0	0	3978	609	21	2		2	CSMD1	8	2975879	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1167577	2975879	143388143	459	51074											
CSMD1	64478	broad.mit.edu	37	chr8	3226686	3226686	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaagtagttatctcacTtgtttacaccgtaatatgtt	7	6	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3226686	A	A	3226686	1	1	47	0	1	0	0	0	0	0	0	0	3978	1624	56	5		5	CSMD1	8	3226686	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	250807	3226686	143137336	460	51075											
CSMD1	64478	broad.mit.edu	37	chr8	3266895	3266895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctccttttctccccttgCaagatccttgcaggacagga	7	13	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3266895	T	T	3266895	1	4	47	0	1	0	0	0	0	0	0	0	3978	725	25	4		4	CSMD1	8	3266895	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	40209	3266895	143097127	461	51076											
CSMD1	64478	broad.mit.edu	37	chr8	4078130	4078130	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgataagggtccatgtgaGaggaaggaccagtggtatat	15	4	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4078130	T	T	4078130	1	4	47	0	1	0	0	0	0	0	0	0	3978	957	33	3		3	CSMD1	8	4078130	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	811235	4078130	142285892	462	51077											
DEFA4	1669	broad.mit.edu	37	chr8	6794216	6794216	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctcccatccgtctctctaGactcggtagcttttttatgc	6	13	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6794216	A	A	6794216	1	1	47	0	1	0	0	0	0	0	0	0	4424	957	33	4		4	DEFA4	8	6794216	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2716086	6794216	139569806	463	51078											
C8orf74	203076	broad.mit.edu	37	chr8	10557779	10557779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgccaggcagtccacaCccagatggagctcctgcagg	11	15	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10557779	A	A	10557779	3	1	47	1	0	0	0	0	1	0	0	0	2462	507	18	3	697	3	C8orf74	8	10557779	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3763563	10557779	135806243	464	51079											
XKR6	286046	broad.mit.edu	37	chr8	10756124	10756124	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgtacacgatccctaCcaccatgttgaagaggatct	8	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10756124	G	G	10756124	3	3	47	1	0	0	0	0	1	0	0	0	17562	507	18	4	665	4	XKR6	8	10756124	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	198345	10756124	135607898	465	51080											
LPL	4023	broad.mit.edu	37	chr8	19813437	19813437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaagaaaatccaagtaaGgcctacaggtgcagttccaa	9	8	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19813437	T	T	19813437	3	4	47	1	0	0	0	0	1	0	0	0	9008	991	35	2	883	2	LPL	8	19813437	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	9057313	19813437	126550585	466	51081											
SLC39A14	23516	broad.mit.edu	37	chr8	22273459	22273459	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggtcattgtgggctcgCtctctgtgcaggtcagtggg	16	8	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22273459	T	T	22273459	3	4	47	1	0	0	0	0	1	0	0	0	14731	797	28	4	1120	4	SLC39A14	8	22273459	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2460022	22273459	124090563	467	51082											
BNIP3L	665	broad.mit.edu	37	chr8	26237667	26237667	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaagagccgaatcaaagttCtagcagacatcattacatta	8	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26237667	G	G	26237667	1	3	47	0	1	0	0	0	0	0	0	0	1485	928	32	4		4	BNIP3L	8	26237667	5'Flank	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3964208	26237667	120126355	468	51083											
CCDC25	55246	broad.mit.edu	37	chr8	27606123	27606123	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcatcttgcagcctgccaaGagagactgtcttcaacatgc	8	12	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27606123	C	C	27606123	1	2	47	0	1	0	0	0	0	0	0	0	2827	957	33	4		4	CCDC25	8	27606123	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1368456	27606123	118757899	469	51084											
LEPROTL1	23484	broad.mit.edu	37	chr8	29963354	29963354	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggtctttggaagcaatgaCgacttcagctggcagcagtg	13	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29963354	T	T	29963354	2	4	47	1	0	0	0	0	0	0	0	1	8805	535	19	4		4	LEPROTL1	8	29963354	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2357231	29963354	116400668	470	51085											
UNC5D	137970	broad.mit.edu	37	chr8	35425584	35425584	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaatataacagcctcaGctgatttgtctcttatctct	6	9	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35425584	A	A	35425584	1	1	47	0	1	0	0	0	0	0	0	0	17121	986	34	4		4	UNC5D	8	35425584	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5462230	35425584	110938438	471	51086											
UNC5D	137970	broad.mit.edu	37	chr8	35608193	35608193	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggacagctttgggacctatGcgctcactggagagccaatc	12	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35608193	C	C	35608193	3	2	47	1	0	0	0	0	1	0	0	0	17121	1319	46	4	2079	4	UNC5D	8	35608193	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	182609	35608193	110755829	472	51087											
HOOK3	84376	broad.mit.edu	37	chr8	42821867	42821868	+	Intron	DNP	GG	TT	TT													gctacctgggctgggatcccGggtctactgcttatgcaacc							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42821868	TT	TT	42821867	1	4	47	0	1	0	0	0	0	0	0	0	7351	1131	39	1		1	HOOK3	8	42821867	Intron	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	7213674	42821867	103542155	473	51088											
SNTG1	54212	broad.mit.edu	37	chr8	51613043	51613043	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttctcctcctcccacccAtccactcttagccatctaaa	2	18	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51613043	G	G	51613043	1	3	47	0	1	0	0	0	0	0	0	0	14988	232	8	5		5	SNTG1	8	51613043	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	8791176	51613043	94750979	474	51089											
ST18	9705	broad.mit.edu	37	chr8	53045903	53045903	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgggctgagaagttgtagTtgggggagtgggggtcacac	19	5	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53045903	A	A	53045903	1	1	47	0	1	0	0	0	0	0	0	0	15330	1740	60	5		5	ST18	8	53045903	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1432860	53045903	93318119	475	51090											
RB1CC1	9821	broad.mit.edu	37	chr8	53586878	53586878	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaactatgagactgctcTaattaggaattagcatgttt	8	5	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53586878	C	C	53586878	1	2	47	0	1	0	0	0	0	0	0	0	13207	1537	53	5		5	RB1CC1	8	53586878	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	540975	53586878	92777144	476	51091											
PREX2	80243	broad.mit.edu	37	chr8	68934373	68934373	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacaatccggacatttcttTtggtaagtgtatatttatgt	8	5	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68934373	A	A	68934373	3	1	47	1	0	0	0	0	1	0	0	0	12583	1838	64	5	453	5	PREX2	8	68934373	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	15347495	68934373	77429649	477	51092											
PREX2	80243	broad.mit.edu	37	chr8	69141432	69141432	+	Intron	DEL	T	-	-													gaagttggaaagttctgctcTtggcagatttgcatttggtc					rs35765956		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69141432	-	-	69141432	6	5	47	0	1	1	0	1	0	0	0	0	12583	1624	56	0		0	PREX2	8	69141432	Intron	DEL	T	TCGA-17-Z014-01A-01W-0746-08	207059	69141432	77222590	478	51093											
C8orf34	116328	broad.mit.edu	37	chr8	69612522	69612522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggatgcagggatatctgGgagggatctgagagatggtg	19	4	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69612522	T	T	69612522	1	4	47	0	1	0	0	0	0	0	0	0	2448	1247	43	2		2	C8orf34	8	69612522	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	471090	69612522	76751500	479	51094											
ZFHX4	79776	broad.mit.edu	37	chr8	77763856	77763856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattcagtttctcacttgCataagctgaaaaaagttttg	6	6	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763856	A	A	77763856	3	1	47	1	0	0	0	0	1	0	0	0	17761	710	25	3	4733	3	ZFHX4	8	77763856	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	8151334	77763856	68600166	480	51095											
ZFHX4	79776	broad.mit.edu	37	chr8	77765146	77765146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaagctttatccaatttctCcatcttctccagaaacgccg	4	14	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77765146	A	A	77765146	3	1	47	1	0	0	0	0	1	0	0	0	17761	855	30	3	6023	3	ZFHX4	8	77765146	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1290	77765146	68598876	481	51096											
SLC7A13	157724	broad.mit.edu	37	chr8	87242008	87242008	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagctaagtatggacacttTcagcactgagctagctatct	9	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87242008	C	C	87242008	3	2	47	1	0	0	0	0	1	0	0	0	14809	1792	62	5	929	5	SLC7A13	8	87242008	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	9476862	87242008	59122014	482	51097											
CNGB3	54714	broad.mit.edu	37	chr8	87656851	87656851	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atactgagttatactttaccTgtagatatatgctttgtcca	6	7	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87656851	A	A	87656851	4	1	47	1	0	0	0	0	0	1	0	0	3633	1594	55	5	1415	5	CNGB3	8	87656851	Nonsense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	414843	87656851	58707171	483	51098											
DCAF4L2	138009	broad.mit.edu	37	chr8	88884993	88884993	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcaaatccacgttcctcCgggctgcatcctgaagaatt	8	12	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88884993	A	A	88884993	1	1	47	0	1	0	0	0	0	0	0	0	4305	667	23	1		1	DCAF4L2	8	88884993	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1228142	88884993	57479029	484	51099											
MMP16	4325	broad.mit.edu	37	chr8	89179958	89179958	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaaatgggtatctcctcCaattcctggtccagggaagt	10	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89179958	T	T	89179958	3	4	47	1	0	0	0	0	1	0	0	0	9748	603	21	4	1358	4	MMP16	8	89179958	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	294965	89179958	57184064	485	51100											
NECAB1	64168	broad.mit.edu	37	chr8	91937934	91937934	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagtctatttatcttgcGttttccaattgattatttta	4	6	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91937934	A	A	91937934	1	1	47	0	1	0	0	0	0	0	0	0	10399	1160	40	4		4	NECAB1	8	91937934	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2757976	91937934	54426088	486	51101											
PDP1	54704	broad.mit.edu	37	chr8	94935646	94935646	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgttggtggctacaaggtGactctgggacagatgcatgg	16	7	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94935646	T	T	94935646	2	4	47	1	0	0	0	0	0	0	0	1	11779	1277	45	3		3	PDP1	8	94935646	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2997712	94935646	51428376	487	51102											
GEM	2669	broad.mit.edu	37	chr8	95262803	95262803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtcaaacaccactgcaCaggctctcccttctgggaag	9	14	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95262803	A	A	95262803	3	1	47	1	0	0	0	0	1	0	0	0	6393	478	17	3	268	3	GEM	8	95262803	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	327157	95262803	51101219	488	51103											
VPS13B	157680	broad.mit.edu	37	chr8	100520071	100520071	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactgacaagctgaacagaCgcaccttgttggttcgaccc	10	12	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100520071	T	T	100520071	3	4	47	1	0	0	0	0	1	0	0	0	17317	536	19	4	4531	4	VPS13B	8	100520071	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	5257268	100520071	45843951	489	51104											
VPS13B	157680	broad.mit.edu	37	chr8	100832296	100832296	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctggctatttgaaggagaGaaaattgttctacaggttcc	10	7	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100832296	A	A	100832296	2	1	47	1	0	0	0	0	0	0	0	1	17317	933	33	4		4	VPS13B	8	100832296	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	312225	100832296	45531726	490	51105											
ZFPM2	23414	broad.mit.edu	37	chr8	106456506	106456506	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttgtgttggtgttttccAggtgatgatgaaggaatcca	12	6	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106456506	T	T	106456506	5	4	47	1	0	0	0	0	0	0	1	0	17784	202	7	5	208	5	ZFPM2	8	106456506	Splice_Site	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5624210	106456506	39907516	491	51106											
ZFPM2	23414	broad.mit.edu	37	chr8	106573780	106573780	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgccatagctcagaaattCtctctgcttgctttccaatg	6	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106573780	A	A	106573780	1	1	47	0	1	0	0	0	0	0	0	0	17784	928	32	3		3	ZFPM2	8	106573780	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	117274	106573780	39790242	492	51107											
OXR1	55074	broad.mit.edu	37	chr8	107754530	107754530	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagacctttgtttttacattCtgtccggagtttgaggtaag	11	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107754530	G	G	107754530	3	3	47	1	0	0	0	0	1	0	0	0	11428	912	32	4	2569	4	OXR1	8	107754530	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1180750	107754530	38609492	493	51108											
KCNV1	27012	broad.mit.edu	37	chr8	110984867	110984867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacgggcagctgtggaagatCcaggtttctccaggatattc	12	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110984867	A	A	110984867	3	1	47	1	0	0	0	0	1	0	0	0	8164	855	30	3	899	3	KCNV1	8	110984867	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3230337	110984867	35379155	494	51109											
CSMD3	114788	broad.mit.edu	37	chr8	113317163	113317163	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactatacaaaaaccaaaggGtgtaattgctaacaaatcac	5	8	1	0	rs140169789	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113317163	C	C	113317163	1	2	47	0	1	0	0	0	0	0	0	0	3980	1276	44	4		4	CSMD3	8	113317163	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2332296	113317163	33046859	495	51110											
CSMD3	114788	broad.mit.edu	37	chr8	113326875	113326875	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaatgtcattaaataatGccagtcttttagagcctcag	7	7	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113326875	T	T	113326875	1	4	47	0	1	0	0	0	0	0	0	0	3980	1334	46	3		3	CSMD3	8	113326875	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	9712	113326875	33037147	496	51111											
CSMD3	114788	broad.mit.edu	37	chr8	113358523	113358523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatattaaaatcatttcaCgttttcaaggctctgagtta	5	7	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113358523	A	A	113358523	1	1	47	0	1	0	0	0	0	0	0	0	3980	551	19	3		3	CSMD3	8	113358523	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	31648	113358523	33005499	497	51112											
TRPS1	7227	broad.mit.edu	37	chr8	116616277	116616277	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catagtgaaagaggagtacaTctacgtcaggggtggtgaat	14	5	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116616277	A	A	116616277	3	1	47	1	0	0	0	0	1	0	0	0	16718	1435	50	5	1981	5	TRPS1	8	116616277	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3257754	116616277	29747745	498	51113											
ATAD2	29028	broad.mit.edu	37	chr8	124359640	124359640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatttaatatctgctccaCagtatcctatccaaagcaac	4	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124359640	A	A	124359640	3	1	47	1	0	0	0	0	1	0	0	0	1075	478	17	3	2320	3	ATAD2	8	124359640	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	7743363	124359640	22004382	499	51114											
FER1L6	654463	broad.mit.edu	37	chr8	125072659	125072659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgagccctcaaaaagctGtgcagttctttcctggagga	11	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125072659	T	T	125072659	1	4	47	0	1	0	0	0	0	0	0	0	5872	1392	48	3		3	FER1L6	8	125072659	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	713019	125072659	21291363	500	51115											
MYC	4609	broad.mit.edu	37	chr8	128750409	128750409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagaggttcgggactgtGgcgcgcactgcgcgctgcgc	20	11	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128750409	T	T	128750409	1	4	47	0	1	0	0	0	0	0	0	0	10110	1363	47	2		2	MYC	8	128750409	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3677750	128750409	17613613	501	51116											
ADCY8	114	broad.mit.edu	37	chr8	131812942	131812942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagagacagaaaatgagGcttggatatcgttatgtcaa	11	5	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131812942	T	T	131812942	1	4	47	0	1	0	0	0	0	0	0	0	300	1218	42	3		3	ADCY8	8	131812942	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3062533	131812942	14551080	502	51117											
TG	7038	broad.mit.edu	37	chr8	133913644	133913644	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggagtcctctccaggagAgtcagcccaggctatgtccc	12	13	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133913644	T	T	133913644	3	4	47	1	0	0	0	0	1	0	0	0	15936	301	11	5	3542	5	TG	8	133913644	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2100702	133913644	12450378	503	51118											
FAM135B	51059	broad.mit.edu	37	chr8	139164170	139164170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaactgcttccctttccCtttggggatgtctatgtatc	7	11	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139164170	A	A	139164170	3	1	47	1	0	0	0	0	1	0	0	0	5495	681	24	2	1704	2	FAM135B	8	139164170	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	5250526	139164170	7199852	504	51119											
FAM135B	51059	broad.mit.edu	37	chr8	139277996	139277996	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagaccacagcatcatttaTgggtacctcttcattccggt	8	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139277996	A	A	139277996	3	1	47	1	0	0	0	0	1	0	0	0	5495	1464	51	5	4041	5	FAM135B	8	139277996	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	113826	139277996	7086026	505	51120											
COL22A1	169044	broad.mit.edu	37	chr8	139869996	139869996	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggagaaggtctgagtgacCctgtggtccaacccccttgt	12	12	1	3	rs138619381	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139869996	G	G	139869996	1	3	47	0	1	0	0	0	0	0	0	0	3713	638	22	4		4	COL22A1	8	139869996	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	592000	139869996	6494026	506	51121											
TRAPPC9	83696	broad.mit.edu	37	chr8	141304865	141304865	+	Intron	DEL	C	-	-													tacaggtgtgcgccaccatgCccggctaaatttgtttgtat					rs34570375		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141304865	-	-	141304865	6	5	47	0	1	1	0	1	0	0	0	0	16589	754	26	0		0	TRAPPC9	8	141304865	Intron	DEL	C	TCGA-17-Z014-01A-01W-0746-08	1434869	141304865	5059157	507	51122											
FLJ43860	389690	broad.mit.edu	37	chr8	142505516	142505516	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagccatgttcttgatcttCttgatgatgtacttcaagtg	9	7	4	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142505516	A	A	142505516	3	1	47	1	0	0	0	0	1	0	0	0	5987	912	32	3	3738	3	FLJ43860	8	142505516	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1200651	142505516	3858506	508	51123											
TSNARE1	203062	broad.mit.edu	37	chr8	143396532	143396532	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacccacacctcctcccGtaccgatgtcccaccttccc	3	24	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143396532	A	A	143396532	1	1	47	0	1	0	0	0	0	0	0	0	16755	1160	40	4		4	TSNARE1	8	143396532	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	891016	143396532	2967490	509	51124											
BAI1	575	broad.mit.edu	37	chr8	143561102	143561102	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttggtgctgtgatctggaAggagaccccagcgggagagg	17	8	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143561102	T	T	143561102	3	4	47	1	0	0	0	0	1	0	0	0	1303	72	3	5	1805	5	BAI1	8	143561102	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	164570	143561102	2802920	510	51125											
EEF1D	1936	broad.mit.edu	37	chr8	144668960	144668960	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatctcctttctgcgtcgTcatatttgaacttgtcgaac	7	10	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144668960	C	C	144668960	3	2	47	1	0	0	0	0	1	0	0	0	4966	1667	58	5	817	5	EEF1D	8	144668960	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1107858	144668960	1695062	511	51126											
KIAA1432	57589	broad.mit.edu	37	chr9	5765719	5765719	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgaagcatcagtttatccCagtcagctgaaaatgttcct	7	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5765719	T	T	5765719	4	4	47	1	0	0	0	0	0	1	0	0	8303	595	21	4	2899	4	KIAA1432	9	5765719	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08		5765719	135447712	512	51127											
C9orf93	203238	broad.mit.edu	37	chr9	15914694	15914694	+	Intron	DEL	A	-	-													ccaggtgacaatggggtatgAaaaaaaaactcctgcagata					rs80170905		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15914694	-	-	15914694	6	5	47	0	1	1	0	1	0	0	0	0	2532	261	9	0		0	C9orf93	9	15914694	Intron	DEL	A	TCGA-17-Z014-01A-01W-0746-08	10148975	15914694	125298737	513	51128											
SLC24A2	25769	broad.mit.edu	37	chr9	19786048	19786048	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaccacatagcaaaaatAagctgttaagagaagcaagc	8	7	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19786048	C	C	19786048	3	2	47	1	0	0	0	0	1	0	0	0	14580	362	13	5	1208	5	SLC24A2	9	19786048	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3871354	19786048	121427383	514	51129											
NOL6	65083	broad.mit.edu	37	chr9	33467824	33467824	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcagctctggccagagcttCagccggtggcacgctgcctg	14	14	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33467824	T	T	33467824	2	4	47	1	0	0	0	0	0	0	0	1	10620	813	29	4		4	NOL6	9	33467824	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	13681776	33467824	107745607	515	51130											
DCAF12	25853	broad.mit.edu	37	chr9	34089245	34089245	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttttcccacaggcaacgTgcagacataaaagcaaaatc	7	11	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34089245	A	A	34089245	1	1	47	0	1	0	0	0	0	0	0	0	4296	1711	59	5		5	DCAF12	9	34089245	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	621421	34089245	107124186	516	51131											
RUSC2	9853	broad.mit.edu	37	chr9	35547523	35547523	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgagtctaagatgtcttaTgagtcccatcaccctgaaag	8	9	3	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35547523	A	A	35547523	4	1	47	1	0	0	0	0	0	1	0	0	13862	1471	51	5	1007	5	RUSC2	9	35547523	Nonsense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1458278	35547523	105665908	517	51132											
PAX5	5079	broad.mit.edu	37	chr9	36882019	36882019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggcaccatccctgtcaGcgtcggtgctgagtagctgc	12	14	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36882019	T	T	36882019	3	4	47	1	0	0	0	0	1	0	0	0	11576	962	34	3	193	3	PAX5	9	36882019	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1334496	36882019	104331412	518	51133											
FRMPD1	22844	broad.mit.edu	37	chr9	37745336	37745336	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttctatccctacaaaggaaGagccacaaggacaactatct	6	12	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37745336	T	T	37745336	4	4	47	1	0	0	0	0	0	1	0	0	6117	943	33	3	3365	3	FRMPD1	9	37745336	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	863317	37745336	103468095	519	51134											
ALDH1B1	219	broad.mit.edu	37	chr9	38396569	38396569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatccagaaagcagctgGcgattccaacctcaagagag	10	12	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38396569	T	T	38396569	3	4	47	1	0	0	0	0	1	0	0	0	493	1203	42	3	826	3	ALDH1B1	9	38396569	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	651233	38396569	102816862	520	51135											
FAM75A6	389730	broad.mit.edu	37	chr9	43627822	43627822	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagttaaaggcgcacgaggTtctggcagtctcctgccacc	12	12	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627822	A	A	43627822	3	1	47	1	0	0	0	0	1	0	0	0	5674	1725	60	5	3170	5	FAM75A6	9	43627822	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	5231253	43627822	97585609	521	51136											
RORB	6096	broad.mit.edu	37	chr9	77286834	77286834	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtaggtccacagatcaCagagccaccaccaccaaaag	8	13	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77286834	T	T	77286834	1	4	47	0	1	0	0	0	0	0	0	0	13640	493	17	4		4	RORB	9	77286834	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	33659012	77286834	63926597	522	51137											
SLC28A3	64078	broad.mit.edu	37	chr9	86902917	86902917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgactcctggagtcccccGccccggcttgggtagtcatt	11	14	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86902917	A	A	86902917	1	1	47	0	1	0	0	0	0	0	0	0	14647	1102	38	4		4	SLC28A3	9	86902917	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	9616083	86902917	54310514	523	51138											
SPIN1	10927	broad.mit.edu	37	chr9	91041518	91041518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgcaggtaggcattgcGgttctacacatatttaaata	9	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91041518	T	T	91041518	1	4	47	0	1	0	0	0	0	0	0	0	15170	1131	39	1		1	SPIN1	9	91041518	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4138601	91041518	50171913	524	51139											
OGN	4969	broad.mit.edu	37	chr9	95165730	95165730	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagttaataaactagtGgcctgctgactgtgggacaa	12	7	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95165730	T	T	95165730	1	4	47	0	1	0	0	0	0	0	0	0	10941	1363	47	2		2	OGN	9	95165730	5'UTR	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4124212	95165730	46047701	525	51140											
COL15A1	1306	broad.mit.edu	37	chr9	101830733	101830733	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccagcctggctggatgacAaaagcgaaactgtgtcaaaa	10	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101830733	T	T	101830733	1	4	47	0	1	0	0	0	0	0	0	0	3704	145	5	5		5	COL15A1	9	101830733	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	6665003	101830733	39382698	526	51141											
OR13C8	138802	broad.mit.edu	37	chr9	107331963	107331963	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttaccattctgtgctaataAtgtcattaaacattttgtct	5	7	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107331963	T	T	107331963	3	4	47	1	0	0	0	0	1	0	0	0	11032	101	4	5	517	5	OR13C8	9	107331963	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5501230	107331963	33881468	527	51142											
ABCA1	19	broad.mit.edu	37	chr9	107560864	107560864	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatggacacaaggacatcCactgatgtggtcatcctgga	11	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107560864	A	A	107560864	2	1	47	1	0	0	0	0	0	0	0	1	28	581	21	2		2	ABCA1	9	107560864	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	228901	107560864	33652567	528	51143											
IKBKAP	8518	broad.mit.edu	37	chr9	111661296	111661296	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagaaaatcattacagaagCccgggcacggtggttcacac	10	11	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111661296	G	G	111661296	1	3	47	0	1	0	0	0	0	0	0	0	7680	754	26	4		4	IKBKAP	9	111661296	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4100432	111661296	29552135	529	51144											
MUSK	4593	broad.mit.edu	37	chr9	113496752	113496752	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttacccagatctctgtcaTtggtctcacctacaccactt	5	14	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113496752	C	C	113496752	1	2	47	0	1	0	0	0	0	0	0	0	10083	1508	52	5		5	MUSK	9	113496752	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1835456	113496752	27716679	530	51145											
SUSD1	64420	broad.mit.edu	37	chr9	114911476	114911476	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatacacagcccagatacTatcctgccatcgccaattgt	5	14	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114911476	A	A	114911476	1	1	47	0	1	0	0	0	0	0	0	0	15525	1537	53	5		5	SUSD1	9	114911476	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1414724	114911476	26301955	531	51146											
PAPPA	5069	broad.mit.edu	37	chr9	118950437	118950437	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttgatggtggagagtgcTgtgaccctgaaatcaccaat	11	8	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118950437	A	A	118950437	3	1	47	1	0	0	0	0	1	0	0	0	11526	1580	55	5	1426	5	PAPPA	9	118950437	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4038961	118950437	22262994	532	51147											
ASTN2	23245	broad.mit.edu	37	chr9	119366275	119366275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtagcctttattatcccCaatggactgaatttcaaatc	6	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119366275	A	A	119366275	1	1	47	0	1	0	0	0	0	0	0	0	1069	609	21	2		2	ASTN2	9	119366275	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	415838	119366275	21847156	533	51148											
ASTN2	23245	broad.mit.edu	37	chr9	119802304	119802304	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgaggaaatgggattggCatcaagtttgggaattctat	14	3	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119802304	A	A	119802304	1	1	47	0	1	0	0	0	0	0	0	0	1069	725	25	3		3	ASTN2	9	119802304	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	436029	119802304	21411127	534	51149											
OR1L6	392390	broad.mit.edu	37	chr9	125512600	125512600	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcccacctacattccctGttccgcgtgctacttatgtc	5	16	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125512600	A	A	125512600	2	1	47	1	0	0	0	0	0	0	0	1	11060	1364	48	4		4	OR1L6	9	125512600	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5710296	125512600	15700831	535	51150											
BAT2L1	84726	broad.mit.edu	37	chr9	134353658	134353658	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagctggggtttaagctcttTgcgtgttctctcagttgtgc	13	8	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134353658	C	C	134353658	1	2	47	0	1	0	0	0	0	0	0	0	1325	1827	63	5		5	BAT2L1	9	134353658	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	8841058	134353658	6859773	536	51151											
FCN1	2219	broad.mit.edu	37	chr9	137803189	137803189	+	Intron	DEL	T	-	-													tgagggctggggatgggtaaTttttttttttttttttttga					rs34307683		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	137803189	-	-	137803189	6	5	47	0	1	1	0	1	0	0	0	0	5848	1508	52	0		0	FCN1	9	137803189	Intron	DEL	T	TCGA-17-Z014-01A-01W-0746-08	3449531	137803189	3410242	537	51152											
DIP2C	22982	broad.mit.edu	37	chr10	373024	373024	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggcccaggtccttaaaCagctttgagaacgactgtgt	11	9	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	373024	G	G	373024	2	3	47	1	0	0	0	0	0	0	0	1	4569	465	17	4		4	DIP2C	10	373024	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08		373024	135161723	538	51153											
PFKP	5214	broad.mit.edu	37	chr10	3147690	3147690	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtgtgtcaaactctcGgaggtaatgcgggtcccgtg	14	9	2	1	rs144604806	byFrequency;by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3147690	T	T	3147690	2	4	47	1	0	0	0	0	0	0	0	1	11861	1103	39	1		1	PFKP	10	3147690	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2774666	3147690	132387057	539	51154											
FBXO18	84893	broad.mit.edu	37	chr10	5958468	5958469	+	Intron	DEL	AG	-	-													ggatctgaggatgggggaacAggggaagtgttagggatctg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5958469	-	-	5958468	6	5	47	0	1	1	0	1	0	0	0	0	5788	203	7	0		0	FBXO18	10	5958468	Intron	DEL	AG	TCGA-17-Z014-01A-01W-0746-08	2810778	5958468	129576279	540	51155											
SFMBT2	57713	broad.mit.edu	37	chr10	7247813	7247813	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtcaaaggataagaatTggcttcacaccagcccactg	9	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7247813	C	C	7247813	3	2	47	1	0	0	0	0	1	0	0	0	14271	1812	63	5	1316	5	SFMBT2	10	7247813	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1289345	7247813	128286934	541	51156											
FAM23A	653567	broad.mit.edu	37	chr10	17813283	17813283	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcttgtccatgattgcttTggcttattttttctcctttg	7	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17813283	G	G	17813283	1	3	47	0	1	0	0	0	0	0	0	0	5594	1827	63	5		5	FAM23A	10	17813283	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	10565470	17813283	117721464	542	51157											
NEBL	10529	broad.mit.edu	37	chr10	21120401	21120401	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatcttgctgctgtcttaCctggctggccatctcggatg	11	11	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21120401	A	A	21120401	5	1	47	1	0	0	0	0	0	0	1	0	10398	521	18	3	1539	3	NEBL	10	21120401	Splice_Site	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3307118	21120401	114414346	543	51158											
MASTL	84930	broad.mit.edu	37	chr10	27475433	27475433	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaagccaggaatactgctCagcacctgactgtatctgga	10	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27475433	T	T	27475433	4	4	47	1	0	0	0	0	0	1	0	0	9420	827	29	4	2654	4	MASTL	10	27475433	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6355032	27475433	108059314	544	51159											
MPP7	143098	broad.mit.edu	37	chr10	28483647	28483647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagtgattgctgagctggGgagggaggacaggtaaagca	17	5	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28483647	A	A	28483647	1	1	47	0	1	0	0	0	0	0	0	0	9833	1247	43	4		4	MPP7	10	28483647	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1008214	28483647	107051100	545	51160											
ZEB1	6935	broad.mit.edu	37	chr10	31711785	31711785	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttggttgtccccagtgtctGttccaatctttatgtctatg	8	9	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31711785	C	C	31711785	1	2	47	0	1	0	0	0	0	0	0	0	17749	1392	48	4		4	ZEB1	10	31711785	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3228138	31711785	103822962	546	51161											
NRP1	8829	broad.mit.edu	37	chr10	33619677	33619677	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgaagtgagggttgaagttGatcataattctctggtatgg	13	4	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33619677	C	C	33619677	3	2	47	1	0	0	0	0	1	0	0	0	10755	1280	45	4	2639	4	NRP1	10	33619677	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1907892	33619677	101915070	547	51162											
ZNF248	57209	broad.mit.edu	37	chr10	38108284	38108284	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttaattattctgggatgaTccagttctttatgaatccag	8	7	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38108284	C	C	38108284	1	2	47	0	1	0	0	0	0	0	0	0	17919	1450	50	5		5	ZNF248	10	38108284	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4488607	38108284	97426463	548	51163											
CXCL12	6387	broad.mit.edu	37	chr10	44871411	44871411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttccttttctgggcagcCtttctcttcttctgtcgctt	6	12	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44871411	A	A	44871411	1	1	47	0	1	0	0	0	0	0	0	0	4113	680	24	2		2	CXCL12	10	44871411	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6763127	44871411	90663336	549	51164											
CHAT	1103	broad.mit.edu	37	chr10	50863357	50863357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggttgcagtgggctcGgccctctgaccaccagatgc	13	15	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50863357	T	T	50863357	1	4	47	0	1	0	0	0	0	0	0	0	3344	1131	39	1		1	CHAT	10	50863357	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5991946	50863357	84671390	550	51165											
A1CF	29974	broad.mit.edu	37	chr10	52610548	52610548	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccagacacactgcttccatCtataggaacctctaaattcc	4	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52610548	T	T	52610548	1	4	47	0	1	0	0	0	0	0	0	0	2	928	32	4		4	A1CF	10	52610548	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1747191	52610548	82924199	551	51166											
PRKG1	5592	broad.mit.edu	37	chr10	52898698	52898698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgatcagtgctcctcagcCtccaaagtgctgggattaca	10	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52898698	A	A	52898698	1	1	47	0	1	0	0	0	0	0	0	0	12628	696	24	2		2	PRKG1	10	52898698	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	288150	52898698	82636049	552	51167											
CSTF2T	23283	broad.mit.edu	37	chr10	53458165	53458165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggatctcctaatggccctCccctcatctcatgtgaggaa	9	13	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53458165	A	A	53458165	3	1	47	1	0	0	0	0	1	0	0	0	4019	855	30	3	709	3	CSTF2T	10	53458165	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	559467	53458165	82076582	553	51168											
PCDH15	65217	broad.mit.edu	37	chr10	55591282	55591282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgatatcaagtagtttgCcatccaaaaatctttattgt	5	6	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55591282	A	A	55591282	3	1	47	1	0	0	0	0	1	0	0	0	11605	739	26	3	3507	3	PCDH15	10	55591282	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2133117	55591282	79943465	554	51169											
CTNNA3	29119	broad.mit.edu	37	chr10	68317228	68317228	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taccatgttcagtctctggtCaaaaacattgtgaatatatt	6	7	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68317228	G	G	68317228	1	3	47	0	1	0	0	0	0	0	0	0	4048	841	29	4		4	CTNNA3	10	68317228	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	12725946	68317228	67217519	555	51170											
CTNNA3	29119	broad.mit.edu	37	chr10	69343428	69343428	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgttttccaacttggttccAttctccccgtcactttcagg	7	13	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69343428	T	T	69343428	1	4	47	0	1	0	0	0	0	0	0	0	4048	232	8	5		5	CTNNA3	10	69343428	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1026200	69343428	66191319	556	51171											
HNRNPH3	3189	broad.mit.edu	37	chr10	70097583	70097583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcctttaacactgttccCcttgatggggttatttgtcc	8	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70097583	A	A	70097583	1	1	47	0	1	0	0	0	0	0	0	0	7335	638	22	2		2	HNRNPH3	10	70097583	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	754155	70097583	65437164	557	51172											
STOX1	219736	broad.mit.edu	37	chr10	70646416	70646417	+	Intron	DNP	GG	AT	AT													tgatttaggccgggcgcagtGgctcatgcctgtaatcccag							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	70646417	AT	AT	70646416	1	1	47	0	1	0	0	0	0	0	0	0	15437	1363	47	4		4	STOX1	10	70646416	Intron	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	548833	70646416	64888331	558	51173											
CDH23	64072	broad.mit.edu	37	chr10	73405688	73405688	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcggacattcgtattcGggtggccatcccactggact	13	11	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73405688	A	A	73405688	3	1	47	1	0	0	0	0	1	0	0	0	3138	1116	39	4	1370	4	CDH23	10	73405688	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2759272	73405688	62129059	559	51174											
PPIF	10105	broad.mit.edu	37	chr10	81111255	81111255	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcacaggcgggcgacttcAccaaccacaatggcacaggc	11	15	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81111255	C	C	81111255	3	2	47	1	0	0	0	0	1	0	0	0	12424	159	6	5	342	5	PPIF	10	81111255	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	7705567	81111255	54423492	560	51175											
DYDC2	84332	broad.mit.edu	37	chr10	82126338	82126338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagggctatttcagtttGgttcttagtctctggcatga	11	7	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82126338	T	T	82126338	1	4	47	0	1	0	0	0	0	0	0	0	4879	1363	47	2		2	DYDC2	10	82126338	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1015083	82126338	53408409	561	51176											
NRG3	10718	broad.mit.edu	37	chr10	83706966	83706966	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctcttcatgccgtcttctCtctatgcatgtccctctgtg	7	14	6	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83706966	A	A	83706966	1	1	47	0	1	0	0	0	0	0	0	0	10744	928	32	3		3	NRG3	10	83706966	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1580628	83706966	51827781	562	51177											
NRG3	10718	broad.mit.edu	37	chr10	84538918	84538918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttttagagtagtgcagcCatgtgaactccaggaaacac	9	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84538918	A	A	84538918	1	1	47	0	1	0	0	0	0	0	0	0	10744	609	21	2		2	NRG3	10	84538918	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	831952	84538918	50995829	563	51178											
GHITM	27069	broad.mit.edu	37	chr10	85901331	85901331	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctttcaccaaggcctcCcctgttgtgaagaattccat	7	14	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85901331	T	T	85901331	2	4	47	1	0	0	0	0	0	0	0	1	6434	610	22	4		4	GHITM	10	85901331	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1362413	85901331	49633416	564	51179											
LRIT2	340745	broad.mit.edu	37	chr10	85984731	85984731	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgttaaaattgagccagaGgtattccaaggtgctcatgt	10	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85984731	A	A	85984731	3	1	47	1	0	0	0	0	1	0	0	0	9035	1000	35	4	1410	4	LRIT2	10	85984731	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	83400	85984731	49550016	565	51180											
FAM190B	54462	broad.mit.edu	37	chr10	86131381	86131390	+	Frame_Shift_Del	DEL	CTCCTGTGCC	-	-													atgcaaaggcctagagcgaaCtcctgtgccaccagaagcag							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86131390	-	-	86131381	7	5	47	1	0	1	0	1	0	0	0	0	5569	564	20	0	575	0	FAM190B	10	86131381	Frame_Shift_Del	DEL	CTCCTGTGCC	TCGA-17-Z014-01A-01W-0746-08	146650	86131381	49403366	566	51181											
HECTD2	143279	broad.mit.edu	37	chr10	93258750	93258750	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttttaattaaaatgaattAgtatttgccatttactttta	3	4	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93258750	T	T	93258750	1	4	47	0	1	0	0	0	0	0	0	0	7107	435	15	5		5	HECTD2	10	93258750	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	7127369	93258750	42275997	567	51182											
KIF11	3832	broad.mit.edu	37	chr10	94369087	94369087	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgttttaacc	17	2	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94369087	A	A	94369087	1	1	47	0	1	0	0	0	0	0	0	0	8342	1392	48	4		4	KIF11	10	94369087	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1110337	94369087	41165660	568	51183											
MYOF	26509	broad.mit.edu	37	chr10	95157206	95157206	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttttctcaattatgtttGtacaaacctgtaaaatcacc	3	9	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95157206	A	A	95157206	3	1	47	1	0	0	0	0	1	0	0	0	10183	1377	48	4	5120	4	MYOF	10	95157206	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	788119	95157206	40377541	569	51184											
LGI1	9211	broad.mit.edu	37	chr10	95552819	95552819	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accattgacaatgcttcatgTgtttaaaagtaaaatggcca	7	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95552819	A	A	95552819	1	1	47	0	1	0	0	0	0	0	0	0	8823	1711	59	5		5	LGI1	10	95552819	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	395613	95552819	39981928	570	51185											
PIK3AP1	118788	broad.mit.edu	37	chr10	98411325	98411325	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattcccaatttcttccaTgtcagtataatagctgataa	4	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98411325	C	C	98411325	3	2	47	1	0	0	0	0	1	0	0	0	12003	1464	51	5	1673	5	PIK3AP1	10	98411325	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2858506	98411325	37123422	571	51186											
CPN1	1369	broad.mit.edu	37	chr10	101829685	101829685	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgaatactatattttctaActtttttttttggagacagg	6	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101829685	G	G	101829685	1	3	47	0	1	0	0	0	0	0	0	0	3841	58	2	5		5	CPN1	10	101829685	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3418360	101829685	33705062	572	51187											
PKD2L1	9033	broad.mit.edu	37	chr10	102058218	102058218	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagtcccttaaagagctcTgaggctctttaagcctcagt	9	10	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102058218	G	G	102058218	1	3	47	0	1	0	0	0	0	0	0	0	12062	1595	55	5		5	PKD2L1	10	102058218	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	228533	102058218	33476529	573	51188											
SUFU	51684	broad.mit.edu	37	chr10	104332673	104332673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgatctggtgcttgttGgctttaacatccacagtgaa	9	7	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104332673	T	T	104332673	1	4	47	0	1	0	0	0	0	0	0	0	15486	1363	47	2		2	SUFU	10	104332673	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2274455	104332673	31202074	574	51189											
COL17A1	1308	broad.mit.edu	37	chr10	105831953	105831953	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctgacatttctgagctcTggaaacaggaaatctaggtg	11	8	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105831953	A	A	105831953	1	1	47	0	1	0	0	0	0	0	0	0	3706	1595	55	5		5	COL17A1	10	105831953	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1499280	105831953	29702794	575	51190											
SORCS3	22986	broad.mit.edu	37	chr10	106927100	106927100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacctctgccagtcaggCatttgtggtaaggagagctc	11	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106927100	A	A	106927100	3	1	47	1	0	0	0	0	1	0	0	0	15046	710	25	3	1944	3	SORCS3	10	106927100	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1095147	106927100	28607647	576	51191											
HSPA12A	259217	broad.mit.edu	37	chr10	118434798	118434798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtgaggcccacgtcctGggggatgatgatccggcact	16	10	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118434798	T	T	118434798	3	4	47	1	0	0	0	0	1	0	0	0	7473	1357	47	2	509	2	HSPA12A	10	118434798	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	11507698	118434798	17099949	577	51192											
KIAA1598	57698	broad.mit.edu	37	chr10	118719676	118719676	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaagcttcagcactttctcGacaagtcttctctatttcaa	4	12	5	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118719676	A	A	118719676	4	1	47	1	0	0	0	0	0	1	0	0	8316	1066	37	4	1713	4	KIAA1598	10	118719676	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	284878	118719676	16815071	578	51193											
SEC23IP	11196	broad.mit.edu	37	chr10	121692698	121692698	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtaagtgttcttaaatttGgtaacatttgagtgggcttt	11	3	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121692698	C	C	121692698	1	2	47	0	1	0	0	0	0	0	0	0	14106	1363	47	4		4	SEC23IP	10	121692698	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2973022	121692698	13842049	579	51194											
FGFR2	2263	broad.mit.edu	37	chr10	123310733	123310734	+	Intron	INS	-	A	A													acagagcgagactccatcgcINSaaaaaaaaaatgtaaataaa							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123310734	A	A	123310733	6	5	47	0	1	1	1	0	0	0	0	0	5923	725	25	0		0	FGFR2	10	123310733	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	1618035	123310733	12224014	580	51195											
EBF3	253738	broad.mit.edu	37	chr10	131761676	131761676	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcggtcctttcaatctcCaccggctgcccctgcctatc	7	17	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131761676	A	A	131761676	2	1	47	1	0	0	0	0	0	0	0	1	4922	581	21	2		2	EBF3	10	131761676	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	8450943	131761676	3773071	581	51196											
CYP2E1	1571	broad.mit.edu	37	chr10	135370455	135370455	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctgctccactgggaacatCttcaccaccttgaatctcca	5	16	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135370455	A	A	135370455	1	1	47	0	1	0	0	0	0	0	0	0	4203	928	32	3		3	CYP2E1	10	135370455	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3608779	135370455	164292	582	51197											
OR52R1	119695	broad.mit.edu	37	chr11	4824735	4824735	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctaactccataaatgatGgggttgagcatgggaggtat	13	5	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4824735	A	A	4824735	2	1	47	1	0	0	0	0	0	0	0	1	11225	1335	47	4		4	OR52R1	11	4824735	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08		4824735	130181781	583	51198											
OR51F2	119694	broad.mit.edu	37	chr11	4843075	4843075	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaccatccttaccaatgccCgaattgccaagattgggatg	8	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4843075	T	T	4843075	4	4	47	1	0	0	0	0	0	1	0	0	11191	644	23	4	462	4	OR51F2	11	4843075	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	18340	4843075	130163441	584	51199											
OR51G1	79324	broad.mit.edu	37	chr11	4944782	4944782	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgttcaccaaagcgatgcAcaagagacaagccaatcatg	9	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4944782	C	C	4944782	3	2	47	1	0	0	0	0	1	0	0	0	11192	159	6	5	179	5	OR51G1	11	4944782	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	101707	4944782	130061734	585	51200											
OR52E2	119678	broad.mit.edu	37	chr11	5080793	5080793	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagatgtgaagtgtttctAgtcctgggatccccagcaac	10	11	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5080793	T	T	5080793	3	4	47	1	0	0	0	0	1	0	0	0	11209	420	15	5	915	5	OR52E2	11	5080793	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	136011	5080793	129925723	586	51201											
OR51B5	282763	broad.mit.edu	37	chr11	5509781	5509781	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaattatatgtggtagtcatTtcagatgtttgtacaagtga	10	3	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5509781	A	A	5509781	1	1	47	0	1	0	0	0	0	0	0	0	11185	1856	64	5		5	OR51B5	11	5509781	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	428988	5509781	129496735	587	51202											
OR52D1	390066	broad.mit.edu	37	chr11	5510137	5510138	+	Nonsense_Mutation	DNP	CC	AA	AA													cctatgtacctcttcctctgCcttctctcactcacagacct							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	5510138	AA	AA	5510137	4	1	47	1	0	0	0	0	0	1	0	0	11208	747	26	3	203	3	OR52D1	11	5510137	Nonsense_Mutation	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	356	5510137	129496379	588	51203											
PRKCDBP	112464	broad.mit.edu	37	chr11	6341223	6341223	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagacggcgggaggggtcaGgaatgtgggtgtggtaggtg	22	4	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6341223	C	C	6341223	1	2	47	0	1	0	0	0	0	0	0	0	12616	1015	35	4		4	PRKCDBP	11	6341223	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	831086	6341223	128665293	589	51204											
NLRP14	338323	broad.mit.edu	37	chr11	7063513	7063513	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttcagcctatgttctttCttgttcctaattccaagttc	5	10	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7063513	A	A	7063513	1	1	47	0	1	0	0	0	0	0	0	0	10571	928	32	3		3	NLRP14	11	7063513	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	722290	7063513	127943003	590	51205											
NLRP14	338323	broad.mit.edu	37	chr11	7079110	7079110	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttttgttttctgtagagtCattttgcttggttctgtgta	10	4	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7079110	T	T	7079110	1	4	47	0	1	0	0	0	0	0	0	0	10571	841	29	4		4	NLRP14	11	7079110	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	15597	7079110	127927406	591	51206											
PPFIBP2	8495	broad.mit.edu	37	chr11	7558199	7558199	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggggacctgaagtgggcAggtagaagggacaggctggc	21	6	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7558199	T	T	7558199	1	4	47	0	1	0	0	0	0	0	0	0	12410	203	7	5		5	PPFIBP2	11	7558199	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	479089	7558199	127448317	592	51207											
NLRP10	338322	broad.mit.edu	37	chr11	7981511	7981511	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcatagattccatctgttCtttaaaatgcttcagatcct	4	10	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7981511	A	A	7981511	4	1	47	1	0	0	0	0	0	1	0	0	10567	922	32	3	323	3	NLRP10	11	7981511	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	423312	7981511	127025005	593	51208											
NLRP10	338322	broad.mit.edu	37	chr11	7981770	7981770	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaagctgatgtggcggaaGctgtagaacttcttgatggc	15	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7981770	C	C	7981770	3	2	47	1	0	0	0	0	1	0	0	0	10567	962	34	4	582	4	NLRP10	11	7981770	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	259	7981770	127024746	594	51209											
GALNTL4	374378	broad.mit.edu	37	chr11	11424586	11424586	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggcagaaggaatgacgctCcagcatgatgtggaggagat	16	6	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11424586	A	A	11424586	1	1	47	0	1	0	0	0	0	0	0	0	6285	870	30	3		3	GALNTL4	11	11424586	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3442816	11424586	123581930	595	51210											
USP47	55031	broad.mit.edu	37	chr11	11926949	11926949	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatattttatttttaggctGatcttataaatgagctatat	5	3	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11926949	A	A	11926949	3	1	47	1	0	0	0	0	1	0	0	0	17205	1290	45	4	645	4	USP47	11	11926949	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	502363	11926949	123079567	596	51211											
ARNTL	406	broad.mit.edu	37	chr11	13387016	13387016	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattatgtttcctacagtatGagaaattgattatccatttc	5	6	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13387016	A	A	13387016	1	1	47	0	1	0	0	0	0	0	0	0	971	1305	45	4		4	ARNTL	11	13387016	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1460067	13387016	121619500	597	51212											
SOX6	55553	broad.mit.edu	37	chr11	16424104	16424104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaccacccaaagcacaCtggaatctcagagatggtga	9	11	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16424104	A	A	16424104	1	1	47	0	1	0	0	0	0	0	0	0	15069	580	20	3		3	SOX6	11	16424104	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3037088	16424104	118582412	598	51213											
PLEKHA7	144100	broad.mit.edu	37	chr11	16847578	16847578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaagagtttaaggctgcCcttacgcagcaagtgctggc	12	9	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16847578	A	A	16847578	1	1	47	0	1	0	0	0	0	0	0	0	12156	638	22	2		2	PLEKHA7	11	16847578	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	423474	16847578	118158938	599	51214											
HPS5	11234	broad.mit.edu	37	chr11	18313428	18313428	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcacatcctggttcaatttCatggatgagttgtcagtatc	9	8	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18313428	A	A	18313428	3	1	47	1	0	0	0	0	1	0	0	0	7409	826	29	3	1420	3	HPS5	11	18313428	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1465850	18313428	116693088	600	51215											
ELP4	26610	broad.mit.edu	37	chr11	31616420	31616420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaagatgaaaatagcttGgcgttaccagttattaccca	7	7	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31616420	T	T	31616420	3	4	47	1	0	0	0	0	1	0	0	0	5124	1357	47	2	499	2	ELP4	11	31616420	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	13302992	31616420	103390096	601	51216											
RAG2	5897	broad.mit.edu	37	chr11	36614149	36614149	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaactaatcaaacaaccTtctaagaaaggatttcttgg	6	8	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36614149	A	A	36614149	3	1	47	1	0	0	0	0	1	0	0	0	13113	1608	56	5	17	5	RAG2	11	36614149	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4997729	36614149	98392367	602	51217											
LRRC4C	57689	broad.mit.edu	37	chr11	40137750	40137750	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacaagaagttgaagagcCagcagcaccacaagcagggg	12	11	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40137750	T	T	40137750	2	4	47	1	0	0	0	0	0	0	0	1	9095	581	21	4		4	LRRC4C	11	40137750	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3523601	40137750	94868766	603	51218											
ALKBH3	221120	broad.mit.edu	37	chr11	43919178	43919178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcatgtcattgaaaggcGctgcaagctggatgtagatg	13	6	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43919178	T	T	43919178	1	4	47	0	1	0	0	0	0	0	0	0	528	1102	38	3		3	ALKBH3	11	43919178	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3781428	43919178	91087338	604	51219											
AMBRA1	55626	broad.mit.edu	37	chr11	46568663	46568663	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcttaaggaaatactcacGtgtaaatcccaaatcctaac	4	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46568663	A	A	46568663	2	1	47	1	0	0	0	0	0	0	0	1	565	1159	40	4		4	AMBRA1	11	46568663	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2649485	46568663	88437853	605	51220											
NR1H3	10062	broad.mit.edu	37	chr11	47281927	47281927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatgatgtttttcctcgGgggagagcgttgaagcactt	13	7	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47281927	T	T	47281927	1	4	47	0	1	0	0	0	0	0	0	0	10713	1247	43	2		2	NR1H3	11	47281927	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	713264	47281927	87724589	606	51221											
FOLH1	2346	broad.mit.edu	37	chr11	49179650	49179650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatcagatatattaaaaaCtagatgtccattaaccagaa	4	7	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49179650	A	A	49179650	1	1	47	0	1	0	0	0	0	0	0	0	6037	580	20	3		3	FOLH1	11	49179650	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1897723	49179650	85826866	607	51222											
OR5M10	390167	broad.mit.edu	37	chr11	56344538	56344538	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaagatcgctgcaaaaatGaaaagataggacagaagaat	10	5	0	6			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56344538	T	T	56344538	3	4	47	1	0	0	0	0	1	0	0	0	11267	1281	45	3	291	3	OR5M10	11	56344538	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	7164888	56344538	78661978	608	51223											
PRG2	5553	broad.mit.edu	37	chr11	57173729	57173730	+	Intron	INS	-	C	C													atggatgaacctgcctgccaINSccccctgccttccaccccca					rs142598803	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57173730	C	C	57173729	6	5	47	0	1	1	1	0	0	0	0	0	12585	174	6	0		0	PRG2	11	57173729	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	829191	57173729	77832787	609	51224											
SERPING1	710	broad.mit.edu	37	chr11	57373796	57373796	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggatctcaatgtccctgcActactctttgctaacaaggc	7	13	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57373796	T	T	57373796	1	4	47	0	1	0	0	0	0	0	0	0	14229	174	6	5		5	SERPING1	11	57373796	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	200067	57373796	77632720	610	51225											
OR1S2	219958	broad.mit.edu	37	chr11	57971021	57971021	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gataaacccacaataaacaaCacaagctcattgatcattgt	4	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57971021	G	G	57971021	2	3	47	1	0	0	0	0	0	0	0	1	11067	465	17	4		4	OR1S2	11	57971021	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	597225	57971021	77035495	611	51226											
PATL1	219988	broad.mit.edu	37	chr11	59405712	59405712	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggaaatatctgacatttaGagagacaacccctgtaaaca	9	8	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59405712	C	C	59405712	1	2	47	0	1	0	0	0	0	0	0	0	11569	957	33	4		4	PATL1	11	59405712	3'UTR	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1434691	59405712	75600804	612	51227											
MS4A2	2206	broad.mit.edu	37	chr11	59858031	59858031	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagttgtttattcccagtAttaacatgatatttataatt	4	6	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59858031	C	C	59858031	1	2	47	0	1	0	0	0	0	0	0	0	9954	464	16	5		5	MS4A2	11	59858031	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	452319	59858031	75148485	613	51228											
MS4A7	58475	broad.mit.edu	37	chr11	60161284	60161284	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattttcctcgacccagtcaCaagatcatatccaacaggtc	5	14	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60161284	T	T	60161284	4	4	47	1	0	0	0	0	0	1	0	0	9960	479	17	4	695	4	MS4A7	11	60161284	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	303253	60161284	74845232	614	51229											
SCGB1D1	10648	broad.mit.edu	37	chr11	61957767	61957767	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataagccaccatgaggctgtCggtgtgtctcctgctgctca	11	12	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61957767	T	T	61957767	3	4	47	1	0	0	0	0	1	0	0	0	14008	893	31	4	13	4	SCGB1D1	11	61957767	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1796483	61957767	73048749	615	51230											
SLC22A9	114571	broad.mit.edu	37	chr11	63141594	63141594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgagaatgtatgtggaaCtaggacacctgaatttcttt	10	5	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63141594	A	A	63141594	1	1	47	0	1	0	0	0	0	0	0	0	14575	580	20	3		3	SLC22A9	11	63141594	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1183827	63141594	71864922	616	51231											
SLC22A12	116085	broad.mit.edu	37	chr11	64359070	64359070	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcgtgggtggcctgggCaggttccaggttctccagac	15	12	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64359070	A	A	64359070	2	1	47	1	0	0	0	0	0	0	0	1	14556	697	25	3		3	SLC22A12	11	64359070	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1217476	64359070	70647446	617	51232											
NRXN2	9379	broad.mit.edu	37	chr11	64458817	64458817	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatgccccggtgggcacaTgttaccatgtctgggttcca	11	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64458817	G	G	64458817	1	3	47	0	1	0	0	0	0	0	0	0	10761	1479	51	5		5	NRXN2	11	64458817	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	99747	64458817	70547699	618	51233											
ATG2A	23130	broad.mit.edu	37	chr11	64664023	64664023	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccctcgctgcagcccccGcatgaggcggccatccttcc	10	20	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64664023	A	A	64664023	3	1	47	1	0	0	0	0	1	0	0	0	1097	1086	38	4	490	4	ATG2A	11	64664023	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	205206	64664023	70342493	619	51234											
SLC25A45	283130	broad.mit.edu	37	chr11	65147454	65147454	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgggatgggcaggtGggccaacctttccctctgcc	17	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65147454	A	A	65147454	1	1	47	0	1	0	0	0	0	0	0	0	14624	1363	47	4		4	SLC25A45	11	65147454	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	483431	65147454	69859062	620	51235											
SPTBN2	6712	broad.mit.edu	37	chr11	66460730	66460730	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctcggcggcatcgcggTagaactgctgggctcgcagg	16	14	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66460730	A	A	66460730	3	1	47	1	0	0	0	0	1	0	0	0	15238	1638	57	5	2451	5	SPTBN2	11	66460730	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1313276	66460730	68545786	621	51236											
SHANK2	22941	broad.mit.edu	37	chr11	70709452	70709452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcccagatgccggctccCcgaacacagcccgacctcat	9	18	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70709452	A	A	70709452	1	1	47	0	1	0	0	0	0	0	0	0	14378	638	22	2		2	SHANK2	11	70709452	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4248722	70709452	64297064	622	51237											
INPPL1	3636	broad.mit.edu	37	chr11	71940001	71940001	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagggacccccaccccAcctcagcccagaggcagata	8	20	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71940001	T	T	71940001	1	4	47	0	1	0	0	0	0	0	0	0	7831	174	6	5		5	INPPL1	11	71940001	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1230549	71940001	63066515	623	51238											
GDPD4	220032	broad.mit.edu	37	chr11	76954731	76954731	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaagagaggtgtggtcaaAcacttaccttaacccattag	9	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76954731	G	G	76954731	1	3	47	0	1	0	0	0	0	0	0	0	6390	58	2	5		5	GDPD4	11	76954731	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5014730	76954731	58051785	624	51239											
PRCP	5547	broad.mit.edu	37	chr11	82560238	82560238	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcataagtgaagggctccAgtaagccactgcaaaccact	9	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82560238	C	C	82560238	2	2	47	1	0	0	0	0	0	0	0	1	12555	175	7	5		5	PRCP	11	82560238	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5605507	82560238	52446278	625	51240											
RAB30	27314	broad.mit.edu	37	chr11	82698586	82698586	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgtgattataaatcctctAatgcccacaaatcaatttcc	3	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82698586	G	G	82698586	1	3	47	0	1	0	0	0	0	0	0	0	13027	377	13	5		5	RAB30	11	82698586	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	138348	82698586	52307930	626	51241											
TMEM135	65084	broad.mit.edu	37	chr11	87013349	87013349	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctttaggttcattgtagGgaaggaagaaattcccacac	9	7	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87013349	C	C	87013349	3	2	47	1	0	0	0	0	1	0	0	0	16174	1232	43	4	593	4	TMEM135	11	87013349	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4314763	87013349	47993167	627	51242											
FOLH1B	219595	broad.mit.edu	37	chr11	89405238	89405238	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtttagtcttctgtaaaggGagtataaaaatactacctca	7	6	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89405238	T	T	89405238	1	4	47	0	1	0	0	0	0	0	0	0	6038	1189	41	3		3	FOLH1B	11	89405238	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2391889	89405238	45601278	628	51243											
HEPHL1	341208	broad.mit.edu	37	chr11	93834662	93834662	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcatccaatgaccaaatGtttaggaatttctagggttc	7	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93834662	A	A	93834662	1	1	47	0	1	0	0	0	0	0	0	0	7122	1392	48	4		4	HEPHL1	11	93834662	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4429424	93834662	41171854	629	51244											
FOLR4	390243	broad.mit.edu	37	chr11	94039196	94039196	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagatccattgttgactcGgcacagatgaaaacaagcct	9	10	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94039196	A	A	94039196	1	1	47	0	1	0	0	0	0	0	0	0	6042	1131	39	4		4	FOLR4	11	94039196	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	204534	94039196	40967320	630	51245											
ATM	472	broad.mit.edu	37	chr11	108205807	108205807	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taatagattgtgtaggttccGatggcaaggagaggagacag	15	4	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108205807	A	A	108205807	3	1	47	1	0	0	0	0	1	0	0	0	1113	1058	37	4	8336	4	ATM	11	108205807	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	14166611	108205807	26800709	631	51246											
BTG4	54766	broad.mit.edu	37	chr11	111368964	111368964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatagctcccacctcatcCcctcagcctccttcccctca	2	23	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111368964	A	A	111368964	1	1	47	0	1	0	0	0	0	0	0	0	1566	638	22	2		2	BTG4	11	111368964	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3163157	111368964	23637552	632	51247											
NCAM1	4684	broad.mit.edu	37	chr11	113076548	113076548	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcatatctgaagttggtAtacttaggtacctgattttc	9	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113076548	G	G	113076548	1	3	47	0	1	0	0	0	0	0	0	0	10297	464	16	5		5	NCAM1	11	113076548	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1707584	113076548	21929968	633	51248											
PCSK7	9159	broad.mit.edu	37	chr11	117097897	117097897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcggctcccgtaggccaCgcccacggcacagaagctgt	13	15	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117097897	A	A	117097897	3	1	47	1	0	0	0	0	1	0	0	0	11699	536	19	3	1664	3	PCSK7	11	117097897	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4021349	117097897	17908619	634	51249											
RNF214	257160	broad.mit.edu	37	chr11	117150546	117150547	+	Intron	DNP	GG	TT	TT													tacttggctgaccaattttgGgttgtacttttgccctggta							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	117150547	TT	TT	117150546	1	4	47	0	1	0	0	0	0	0	0	0	13589	1247	43	2		2	RNF214	11	117150546	Intron	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	52649	117150546	17855970	635	51250											
FXYD6	53826	broad.mit.edu	37	chr11	117712648	117712648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgttccccctacccctcCtgccaggcagggctgcattc	9	18	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117712648	A	A	117712648	1	1	47	0	1	0	0	0	0	0	0	0	6182	696	24	2		2	FXYD6	11	117712648	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	562102	117712648	17293868	636	51251											
SORL1	6653	broad.mit.edu	37	chr11	121460900	121460900	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtaagaggcccctgggGcctgggttagccccataacc	15	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121460900	C	C	121460900	1	2	47	0	1	0	0	0	0	0	0	0	15048	1218	42	4		4	SORL1	11	121460900	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3748252	121460900	13545616	637	51252											
GRAMD1B	57476	broad.mit.edu	37	chr11	123480980	123480980	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccacgacgtgccctaccAtgactacttctacacaatca	4	17	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123480980	G	G	123480980	3	3	47	1	0	0	0	0	1	0	0	0	6814	217	8	5	1474	5	GRAMD1B	11	123480980	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2020080	123480980	11525536	638	51253											
CDON	50937	broad.mit.edu	37	chr11	125894478	125894481	+	Intron	DEL	GAGG	-	-													actagaggagagacagaagaGagggttcatcactggttctg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125894481	-	-	125894478	6	5	47	0	1	1	0	1	0	0	0	0	3200	957	33	0		0	CDON	11	125894478	Intron	DEL	GAGG	TCGA-17-Z014-01A-01W-0746-08	2413498	125894478	9112038	639	51254											
SNX19	399979	broad.mit.edu	37	chr11	130785334	130785334	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctttgcctgaatgtagctCtgcaggtgacaaccgcagag	11	11	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130785334	A	A	130785334	3	1	47	1	0	0	0	0	1	0	0	0	15004	912	32	3	2521	3	SNX19	11	130785334	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4890856	130785334	4221182	640	51255											
NTM	50863	broad.mit.edu	37	chr11	131737742	131737742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcacaggccacggaaccCcaccaccagcagatggagct	10	16	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131737742	A	A	131737742	1	1	47	0	1	0	0	0	0	0	0	0	10794	638	22	2		2	NTM	11	131737742	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	952408	131737742	3268774	641	51256											
THYN1	29087	broad.mit.edu	37	chr11	134119194	134119194	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctttgaatcatctgcctgcAgtcagctccacagccaatct	7	14	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134119194	T	T	134119194	1	4	47	0	1	0	0	0	0	0	0	0	16009	203	7	5		5	THYN1	11	134119194	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2381452	134119194	887322	642	51257											
SLC6A12	6539	broad.mit.edu	37	chr12	301674	301674	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccccgagtcttcaggagGgtgatgacgacgaagagtgg	17	8	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	301674	T	T	301674	2	4	47	1	0	0	0	0	0	0	0	1	14789	1219	43	2		2	SLC6A12	12	301674	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08		301674	133550221	643	51258											
WNK1	65125	broad.mit.edu	37	chr12	971207	971207	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctccattttgtgatttgtCtttctctctctctttttttt	3	10	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	971207	G	G	971207	1	3	47	0	1	0	0	0	0	0	0	0	17504	928	32	4		4	WNK1	12	971207	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	669533	971207	132880688	644	51259											
CACNA1C	775	broad.mit.edu	37	chr12	2566852	2566852	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtgctgcgccccctgcGgctggtgtccggagtcccaa	14	17	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2566852	A	A	2566852	3	1	47	1	0	0	0	0	1	0	0	0	2566	1116	39	4	755	4	CACNA1C	12	2566852	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1595645	2566852	131285043	645	51260											
NDUFA9	4704	broad.mit.edu	37	chr12	4768111	4768111	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttaagtagtgtgaatttCagtactgttatgaaaaccat	8	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4768111	T	T	4768111	1	4	47	0	1	0	0	0	0	0	0	0	10367	841	29	4		4	NDUFA9	12	4768111	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2201259	4768111	129083784	646	51261											
GDF3	9573	broad.mit.edu	37	chr12	7842804	7842804	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcttacaagaaagcttgggGacagggatggctgctctcct	12	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7842804	T	T	7842804	2	4	47	1	0	0	0	0	0	0	0	1	6379	1161	41	3		3	GDF3	12	7842804	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3074693	7842804	126009091	647	51262											
NECAP1	25977	broad.mit.edu	37	chr12	8235114	8235114	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcctccctacctgggttgtCatctccctgaccacctgctc	7	18	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8235114	G	G	8235114	1	3	47	0	1	0	0	0	0	0	0	0	10402	841	29	4		4	NECAP1	12	8235114	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	392310	8235114	125616781	648	51263											
FAM90A1	55138	broad.mit.edu	37	chr12	8380297	8380297	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgtggcacggagagagacGggtccatggcagtgtctgct	16	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8380297	A	A	8380297	1	1	47	0	1	0	0	0	0	0	0	0	5703	1131	39	4		4	FAM90A1	12	8380297	5'Flank	SNP	G	TCGA-17-Z014-01A-01W-0746-08	145183	8380297	125471598	649	51264											
C12orf59	120939	broad.mit.edu	37	chr12	10342761	10342761	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagctgtcattttataaaTaggagtggagtgatgtccag	13	4	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10342761	C	C	10342761	1	2	47	0	1	0	0	0	0	0	0	0	1715	1421	49	5		5	C12orf59	12	10342761	3'UTR	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1962464	10342761	123509134	650	51265											
LRP6	4040	broad.mit.edu	37	chr12	12352942	12352942	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaaaacacaaggctcttCtcatccagaggtatataggc	7	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12352942	T	T	12352942	1	4	47	0	1	0	0	0	0	0	0	0	9049	928	32	4		4	LRP6	12	12352942	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2010181	12352942	121498953	651	51266											
GRIN2B	2904	broad.mit.edu	37	chr12	13839351	13839351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtaatcatctctccctGctgtactgtgtgggggctag	12	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13839351	T	T	13839351	1	4	47	0	1	0	0	0	0	0	0	0	6846	1334	46	3		3	GRIN2B	12	13839351	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1486409	13839351	120012544	652	51267											
DERA	51071	broad.mit.edu	37	chr12	16118644	16118644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatttctaacttttccacCctccttgaagctccttcact	3	14	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16118644	T	T	16118644	1	4	47	0	1	0	0	0	0	0	0	0	4485	638	22	4		4	DERA	12	16118644	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2279293	16118644	117733251	653	51268											
PDE3A	5139	broad.mit.edu	37	chr12	20769338	20769338	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcatacggctcctgctGgtttaatgtctcttagagaa	12	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20769338	C	C	20769338	1	2	47	0	1	0	0	0	0	0	0	0	11731	1363	47	4		4	PDE3A	12	20769338	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4650694	20769338	113082557	654	51269											
SLCO1B1	10599	broad.mit.edu	37	chr12	21349861	21349861	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgatttttgactggcttCtataattatttattctaggc	6	5	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21349861	T	T	21349861	1	4	47	0	1	0	0	0	0	0	0	0	14837	928	32	4		4	SLCO1B1	12	21349861	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	580523	21349861	112502034	655	51270											
PYROXD1	79912	broad.mit.edu	37	chr12	21598277	21598277	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaatctcttggatctatAcagatttctaaaatattgga	5	5	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21598277	G	G	21598277	1	3	47	0	1	0	0	0	0	0	0	0	12974	406	14	5		5	PYROXD1	12	21598277	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	248416	21598277	112253618	656	51271											
KRAS	3845	broad.mit.edu	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25380276	A	A	25380276	3	1	47	1	0	0	0	0	1	0	0	0	8509	1812	63	5	520	5	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3781999	25380276	108471619	657	51272											
FAR2	55711	broad.mit.edu	37	chr12	29460824	29460825	+	Intron	DNP	CC	AA	AA													caaactaaggttcttctagtCcaattactttctgatgtctt							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29460825	AA	AA	29460824	1	1	47	0	1	0	0	0	0	0	0	0	5732	870	30	3		3	FAR2	12	29460824	Intron	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	4080548	29460824	104391071	658	51273											
OVCH1	341350	broad.mit.edu	37	chr12	29615067	29615067	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattcagtttggcctgagctGatgtagaattctgaatttaa	9	6	2	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29615067	A	A	29615067	1	1	47	0	1	0	0	0	0	0	0	0	11417	1305	45	4		4	OVCH1	12	29615067	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	154243	29615067	104236828	659	51274											
SYT10	341359	broad.mit.edu	37	chr12	33529653	33529653	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtgcacatcaagtttGttcattagtacggatatatt	7	5	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33529653	T	T	33529653	1	4	47	0	1	0	0	0	0	0	0	0	15585	1392	48	3		3	SYT10	12	33529653	3'UTR	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3914586	33529653	100322242	660	51275											
ADAMTS20	80070	broad.mit.edu	37	chr12	43837666	43837666	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgttgctcctgcgggaaTctttacaacaacattataac	7	9	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43837666	C	C	43837666	3	2	47	1	0	0	0	0	1	0	0	0	266	1435	50	5	3609	5	ADAMTS20	12	43837666	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	10308013	43837666	90014229	661	51276											
NELL2	4753	broad.mit.edu	37	chr12	45079577	45079577	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggagagatctgctgttagtCtgatgggcttccctttgagg	14	8	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45079577	G	G	45079577	1	3	47	0	1	0	0	0	0	0	0	0	10429	928	32	4		4	NELL2	12	45079577	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1241911	45079577	88772318	662	51277											
RACGAP1	29127	broad.mit.edu	37	chr12	50393065	50393065	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaagtacctagaaaacaAgcaacttttaagctttgtgt	7	6	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50393065	T	T	50393065	1	4	47	0	1	0	0	0	0	0	0	0	13085	87	3	5		5	RACGAP1	12	50393065	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	5313488	50393065	83458830	663	51278											
LETMD1	25875	broad.mit.edu	37	chr12	51443007	51443007	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagaaattccggaatcagctCttgggcagggtcaaagagtt	12	7	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51443007	T	T	51443007	1	4	47	0	1	0	0	0	0	0	0	0	8808	928	32	4		4	LETMD1	12	51443007	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1049942	51443007	82408888	664	51279											
KRT75	9119	broad.mit.edu	37	chr12	52824463	52824463	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcaccacggatgtgtcaccGacctgggtctgcaactggga	13	12	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52824463	T	T	52824463	2	4	47	1	0	0	0	0	0	0	0	1	8559	1045	37	3		3	KRT75	12	52824463	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1381456	52824463	81027432	665	51280											
SP1	6667	broad.mit.edu	37	chr12	53775908	53775908	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggagtcccagccatcCcctttggctctgctggcagc	12	16	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53775908	T	T	53775908	2	4	47	1	0	0	0	0	0	0	0	1	15073	610	22	4		4	SP1	12	53775908	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	951445	53775908	80075987	666	51281											
ATF7	11016	broad.mit.edu	37	chr12	53994752	53994752	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtacctgtccacagcccggGgcattgcacacaaacggtct	10	15	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53994752	A	A	53994752	2	1	47	1	0	0	0	0	0	0	0	1	1090	1219	43	4		4	ATF7	12	53994752	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	218844	53994752	79857143	667	51282											
NCKAP1L	3071	broad.mit.edu	37	chr12	54912574	54912574	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgaacatcttttatccGgaaatattgatctttgagcc	8	7	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54912574	A	A	54912574	1	1	47	0	1	0	0	0	0	0	0	0	10317	1131	39	4		4	NCKAP1L	12	54912574	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	917822	54912574	78939321	668	51283											
KIF5A	3798	broad.mit.edu	37	chr12	57962848	57962848	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccgcactggctgagggcActgtgagtgatccttaggtc	13	11	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57962848	T	T	57962848	3	4	47	1	0	0	0	0	1	0	0	0	8375	159	6	5	851	5	KIF5A	12	57962848	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3050274	57962848	75889047	669	51284											
KIF5A	3798	broad.mit.edu	37	chr12	57970279	57970279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcattccctcaacaatGccacaacttcgtagccccac	5	16	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57970279	T	T	57970279	1	4	47	0	1	0	0	0	0	0	0	0	8375	1334	46	3		3	KIF5A	12	57970279	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	7431	57970279	75881616	670	51285											
NUP107	57122	broad.mit.edu	37	chr12	69113304	69113304	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagcttctctttttagaaaGaattgtaataaggtcttatt	6	4	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69113304	T	T	69113304	1	4	47	0	1	0	0	0	0	0	0	0	10848	957	33	3		3	NUP107	12	69113304	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	11143025	69113304	64738591	671	51286											
PTPRB	5787	broad.mit.edu	37	chr12	70930063	70930063	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgacttcagaaaaagataCtaacacaagtgtcaatgctt	6	8	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70930063	A	A	70930063	1	1	47	0	1	0	0	0	0	0	0	0	12904	580	20	3		3	PTPRB	12	70930063	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1816759	70930063	62921832	672	51287											
LGR5	8549	broad.mit.edu	37	chr12	71928840	71928840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgcctggccttgtttaGgcctgttattgttcattttt	9	8	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71928840	T	T	71928840	1	4	47	0	1	0	0	0	0	0	0	0	8829	1015	35	2		2	LGR5	12	71928840	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	998777	71928840	61923055	673	51288											
TMTC3	160418	broad.mit.edu	37	chr12	88589117	88589117	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatattcagcgccatttgaaTatagtcagggataagatttc	8	6	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88589117	C	C	88589117	2	2	47	1	0	0	0	0	0	0	0	1	16385	1403	49	5		5	TMTC3	12	88589117	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	16660277	88589117	45262778	674	51289											
EEA1	8411	broad.mit.edu	37	chr12	93170803	93170803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaacttgctgccagagttcTataaaattttgactatatga	6	7	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93170803	A	A	93170803	1	1	47	0	1	0	0	0	0	0	0	0	4961	1537	53	5		5	EEA1	12	93170803	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4581686	93170803	40681092	675	51290											
CDK17	5128	broad.mit.edu	37	chr12	96694099	96694099	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctctccaagcttttccaAtttgatgtaggtttccattt	5	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96694099	G	G	96694099	2	3	47	1	0	0	0	0	0	0	0	1	3163	98	4	5		5	CDK17	12	96694099	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3523296	96694099	37157796	676	51291											
UTP20	27340	broad.mit.edu	37	chr12	101763434	101763434	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaagagtctgcatagcctCaggtgctgcatagttggatt	11	7	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101763434	T	T	101763434	1	4	47	0	1	0	0	0	0	0	0	0	17226	841	29	4		4	UTP20	12	101763434	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	5069335	101763434	32088461	677	51292											
WSCD2	9671	broad.mit.edu	37	chr12	108641628	108641628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggtgtgagccacctcacCtggcctgtattattacagtt	9	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108641628	A	A	108641628	1	1	47	0	1	0	0	0	0	0	0	0	17534	696	24	2		2	WSCD2	12	108641628	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6878194	108641628	25210267	678	51293											
UBE3B	89910	broad.mit.edu	37	chr12	109926163	109926163	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcccaagaataatggaatCccatgattccattatcaggc	6	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109926163	A	A	109926163	1	1	47	0	1	0	0	0	0	0	0	0	17006	870	30	3		3	UBE3B	12	109926163	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1284535	109926163	23925732	679	51294											
IFT81	28981	broad.mit.edu	37	chr12	110630618	110630618	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattttacttgggtaatataGaaaacaaattatcattatta	4	3	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110630618	C	C	110630618	1	2	47	0	1	0	0	0	0	0	0	0	7635	957	33	4		4	IFT81	12	110630618	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	704455	110630618	23221277	680	51295											
PTPN11	5781	broad.mit.edu	37	chr12	112939970	112939970	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcaagaggaaagggcacgAatatacaaatattaagtatt	9	4	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112939970	T	T	112939970	3	4	47	1	0	0	0	0	1	0	0	0	12886	246	9	5	1676	5	PTPN11	12	112939970	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2309352	112939970	20911925	681	51296											
RPH3A	22895	broad.mit.edu	37	chr12	113307819	113307819	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggaccacagtgggggtgcTggagactccagccggagccc	17	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113307819	A	A	113307819	2	1	47	1	0	0	0	0	0	0	0	1	13662	1567	55	5		5	RPH3A	12	113307819	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	367849	113307819	20544076	682	51297											
CLIP1	6249	broad.mit.edu	37	chr12	122826219	122826219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctccagttccattataCgtgacttttctgaaactgta	5	10	2	2	rs145140413		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122826219	A	A	122826219	3	1	47	1	0	0	0	0	1	0	0	0	3564	536	19	3	2848	3	CLIP1	12	122826219	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	9518400	122826219	11025676	683	51298											
ATP12A	479	broad.mit.edu	37	chr13	25265412	25265412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccatgctgttagacagcCtgcacctggccctgtggaca	11	13	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25265412	A	A	25265412	1	1	47	0	1	0	0	0	0	0	0	0	1126	696	24	2		2	ATP12A	13	25265412	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08		25265412	89904466	684	51299											
RBM26	64062	broad.mit.edu	37	chr13	79942937	79942937	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggtccacttggtcttcatGaaattcagaccaactttcgg	8	10	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79942937	A	A	79942937	3	1	47	1	0	0	0	0	1	0	0	0	13234	1290	45	4	2183	4	RBM26	13	79942937	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	54677525	79942937	35226941	685	51300											
NALCN	259232	broad.mit.edu	37	chr13	101714312	101714312	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacctgcatgtgtgcagtTcactcacagctctgatgcgc	9	14	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101714312	A	A	101714312	1	1	47	0	1	0	0	0	0	0	0	0	10242	1798	62	5		5	NALCN	13	101714312	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	21771375	101714312	13455566	686	51301											
NALCN	259232	broad.mit.edu	37	chr13	101756875	101756875	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagattttgcagcggtaagCggtacctgcaaagtaggtgc	14	7	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101756875	A	A	101756875	1	1	47	0	1	0	0	0	0	0	0	0	10242	783	27	3		3	NALCN	13	101756875	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	42563	101756875	13413003	687	51302											
NALCN	259232	broad.mit.edu	37	chr13	101871790	101871790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttggttcagcattgttGctcattctccattcaaacac	7	10	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101871790	T	T	101871790	1	4	47	0	1	0	0	0	0	0	0	0	10242	1334	46	3		3	NALCN	13	101871790	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	114915	101871790	13298088	688	51303											
NALCN	259232	broad.mit.edu	37	chr13	102029288	102029288	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaatatttgtaattctGgtccttggcagttcaaatcg	7	6	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102029288	A	A	102029288	2	1	47	1	0	0	0	0	0	0	0	1	10242	1335	47	4		4	NALCN	13	102029288	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	157498	102029288	13140590	689	51304											
ITGBL1	9358	broad.mit.edu	37	chr13	102140970	102140970	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatagaaagtgcagtttactGagcatgtactgtgtgctcag	11	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102140970	A	A	102140970	1	1	47	0	1	0	0	0	0	0	0	0	7972	1305	45	4		4	ITGBL1	13	102140970	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	111682	102140970	13028908	690	51305											
TPP2	7174	broad.mit.edu	37	chr13	103317145	103317145	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttcttttttcctctccagGaacgaatgaaaagacttaat	5	8	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103317145	T	T	103317145	4	4	47	1	0	0	0	0	0	1	0	0	16536	1188	41	3	3304	3	TPP2	13	103317145	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1176175	103317145	11852733	691	51306											
MYO16	23026	broad.mit.edu	37	chr13	109613874	109613874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattcattctctctgtttGtaaaatgcataggaggtgga	9	7	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109613874	T	T	109613874	1	4	47	0	1	0	0	0	0	0	0	0	10158	1392	48	3		3	MYO16	13	109613874	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	6296729	109613874	5556004	692	51307											
ATP11A	23250	broad.mit.edu	37	chr13	113473716	113473716	+	Silent	SNP	C	T	T													gagcagccccagcccgacctCtacaagtaagcgggagcttt							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113473716	T	T	113473716	2	4	47	1	0	0	0	0	0	0	0	1	1123	900	32	4		4	ATP11A	13	113473716	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3859842	113473716	1696162	693	51308	245	2									
ATP11A	23250	broad.mit.edu	37	chr13	113473723	113473723	+	Splice_Site	SNP	T	G	G													cccagcccgacctctacaagTaagcgggagctttgggttct							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113473723	G	G	113473723	5	3	47	1	0	0	0	0	0	0	1	0	1123	1652	57	5	702	5	ATP11A	13	113473723	Splice_Site	SNP	T	TCGA-17-Z014-01A-01W-0746-08	7	113473723	1696155	694	51309	245	2									
ABHD4	63874	broad.mit.edu	37	chr14	23078625	23078625	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttattgctgttttgcttttGacagtggtgagacagcattc	10	6	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23078625	C	C	23078625	1	2	47	0	1	0	0	0	0	0	0	0	84	1305	45	4		4	ABHD4	14	23078625	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08		23078625	84270915	695	51310											
MMP14	4323	broad.mit.edu	37	chr14	23313044	23313044	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacgggaactttgacaccGtggccatgctccgaggggag	16	10	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23313044	A	A	23313044	3	1	47	1	0	0	0	0	1	0	0	0	9746	1145	40	4	998	4	MMP14	14	23313044	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	234419	23313044	84036496	696	51311											
REM2	161253	broad.mit.edu	37	chr14	23354108	23354108	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggaggcagcccctgctcAaaaggatggcatcttcaagg	14	10	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23354108	G	G	23354108	3	3	47	1	0	0	0	0	1	0	0	0	13331	130	5	5	335	5	REM2	14	23354108	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	41064	23354108	83995432	697	51312											
MDP1	145553	broad.mit.edu	37	chr14	24683754	24683754	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccgatgaacaaagtacctGaagaggtcaaagagctccag	10	10	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24683754	T	T	24683754	3	4	47	1	0	0	0	0	1	0	0	0	9509	1281	45	3	281	3	MDP1	14	24683754	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1329646	24683754	82665786	698	51313											
DHRS1	115817	broad.mit.edu	37	chr14	24760615	24760615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctctcagacctcaaactGggaatgctgaccccttgggc	11	13	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24760615	T	T	24760615	1	4	47	0	1	0	0	0	0	0	0	0	4526	1363	47	2		2	DHRS1	14	24760615	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	76861	24760615	82588925	699	51314											
SYT16	83851	broad.mit.edu	37	chr14	62542187	62542187	+	Intron	DEL	A	-	-													ctctcctttctcatctctctAaaaaaaaaaaaaaattccag					rs35857227		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62542187	-	-	62542187	6	5	47	0	1	1	0	1	0	0	0	0	15591	377	13	0		0	SYT16	14	62542187	Intron	DEL	A	TCGA-17-Z014-01A-01W-0746-08	37781572	62542187	44807353	700	51315											
SYNE2	23224	broad.mit.edu	37	chr14	64443330	64443330	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccttgcccccacccctccAtcaaactgaagcttggctcc	6	19	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64443330	G	G	64443330	3	3	47	1	0	0	0	0	1	0	0	0	15565	217	8	5	1220	5	SYNE2	14	64443330	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1901143	64443330	42906210	701	51316											
RGS6	9628	broad.mit.edu	37	chr14	73003083	73003083	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcccttgggttttatttAtttcctactttcttctttcc	3	11	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73003083	G	G	73003083	1	3	47	0	1	0	0	0	0	0	0	0	13418	464	16	5		5	RGS6	14	73003083	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	8559753	73003083	34346457	702	51317											
VASH1	22846	broad.mit.edu	37	chr14	77236310	77236310	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctctgtccccagatccCcataccgagtgtgcctacgt	7	16	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77236310	T	T	77236310	3	4	47	1	0	0	0	0	1	0	0	0	17252	623	22	4	320	4	VASH1	14	77236310	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4233227	77236310	30113230	703	51318											
C14orf174	161394	broad.mit.edu	37	chr14	77844783	77844783	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagtttcctgaggaagaatCaagaaaaacaaatgaggaaa	10	4	1	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77844783	G	G	77844783	4	3	47	1	0	0	0	0	0	1	0	0	1772	838	29	4	1024	4	C14orf174	14	77844783	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	608473	77844783	29504757	704	51319											
NRXN3	9369	broad.mit.edu	37	chr14	79490340	79490340	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttatttattttatattttGcacttcctaagaatcattcc	2	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79490340	C	C	79490340	1	2	47	0	1	0	0	0	0	0	0	0	10762	1334	46	4		4	NRXN3	14	79490340	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1645557	79490340	27859200	705	51320											
NRXN3	9369	broad.mit.edu	37	chr14	80130240	80130240	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcaccaggaacggcggCaacgccaccctgcaggtgga	13	15	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80130240	A	A	80130240	2	1	47	1	0	0	0	0	0	0	0	1	10762	697	25	3		3	NRXN3	14	80130240	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	639900	80130240	27219300	706	51321											
CATSPERB	79820	broad.mit.edu	37	chr14	92070710	92070710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggattcagccagtgccCagactgaaattgattaatgt	11	7	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92070710	A	A	92070710	1	1	47	0	1	0	0	0	0	0	0	0	2717	609	21	2		2	CATSPERB	14	92070710	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	11940470	92070710	15278830	707	51322											
PPP4R4	57718	broad.mit.edu	37	chr14	94745062	94745062	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagctaaagcagtggctggGgctttgtttttaaattttgg	12	4	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94745062	T	T	94745062	1	4	47	0	1	0	0	0	0	0	0	0	12506	1247	43	2		2	PPP4R4	14	94745062	3'UTR	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2674352	94745062	12604478	708	51323											
SERPINA10	51156	broad.mit.edu	37	chr14	94756235	94756235	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaacaagatgtaatccacAagaattaatttggtttcagg	8	5	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94756235	T	T	94756235	2	4	47	1	0	0	0	0	0	0	0	1	14200	117	5	5		5	SERPINA10	14	94756235	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	11173	94756235	12593305	709	51324											
C14orf49	161176	broad.mit.edu	37	chr14	95884439	95884439	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggttcagggggcgaggagGatgccaggagcggtggtagc	21	7	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95884439	T	T	95884439	1	4	47	0	1	0	0	0	0	0	0	0	1789	1189	41	3		3	C14orf49	14	95884439	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1128204	95884439	11465101	710	51325											
EVL	51466	broad.mit.edu	37	chr14	100511612	100511612	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttcctggcacctcttcctGgtcatctttttaagtttcca	6	12	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100511612	C	C	100511612	1	2	47	0	1	0	0	0	0	0	0	0	5333	1363	47	4		4	EVL	14	100511612	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4627173	100511612	6837928	711	51326											
WDR25	79446	broad.mit.edu	37	chr14	100934399	100934399	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcactgcctgcagacctaCtccctgcacacagaggcagt	11	15	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100934399	T	T	100934399	2	4	47	1	0	0	0	0	0	0	0	1	17409	576	20	4		4	WDR25	14	100934399	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	422787	100934399	6415141	712	51327											
AHNAK2	113146	broad.mit.edu	37	chr14	105410043	105410043	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttccaccttggggtctttTaggtccagcttggggccctt	11	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105410043	C	C	105410043	2	2	47	1	0	0	0	0	0	0	0	1	415	1741	61	5		5	AHNAK2	14	105410043	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4475644	105410043	1939497	713	51328											
GABRB3	2562	broad.mit.edu	37	chr15	26828544	26828544	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaggtccatcatgcatGctgctgtcgtggtgattctg	12	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26828544	A	A	26828544	3	1	47	1	0	0	0	0	1	0	0	0	6228	1319	46	4	962	4	GABRB3	15	26828544	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08		26828544	75702848	714	51329											
GABRG3	2567	broad.mit.edu	37	chr15	27334280	27334280	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatagggcaggaaggaccGtggaaggaccagacttgtgg	17	8	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27334280	C	C	27334280	1	2	47	0	1	0	0	0	0	0	0	0	6233	1160	40	4		4	GABRG3	15	27334280	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	505736	27334280	75197112	715	51330											
OTUD7A	161725	broad.mit.edu	37	chr15	32058817	32058817	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccactggtgtattgataataActattccttcttgtactact	5	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32058817	T	T	32058817	1	4	47	0	1	0	0	0	0	0	0	0	11412	58	2	5		5	OTUD7A	15	32058817	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	4724537	32058817	70472575	716	51331											
RYR3	6263	broad.mit.edu	37	chr15	33925214	33925214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgatgtgaagctgttacctCctcaagaaattttagtggat	9	7	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33925214	A	A	33925214	3	1	47	1	0	0	0	0	1	0	0	0	13881	855	30	3	3026	3	RYR3	15	33925214	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1866397	33925214	68606178	717	51332											
CHRM5	1133	broad.mit.edu	37	chr15	34355078	34355078	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgtcttggtcatgatcTccttcaaagtcaacagccag	8	11	5	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34355078	A	A	34355078	3	1	47	1	0	0	0	0	1	0	0	0	3411	1551	54	5	162	5	CHRM5	15	34355078	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	429864	34355078	68176314	718	51333											
IVD	3712	broad.mit.edu	37	chr15	40705048	40705048	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccggaaggtcccggggggAgcatgggactaggatgctgc	18	10	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40705048	G	G	40705048	1	3	47	0	1	0	0	0	0	0	0	0	7998	319	11	5		5	IVD	15	40705048	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	6349970	40705048	61826344	719	51334											
RTF1	23168	broad.mit.edu	37	chr15	41762554	41762554	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccagtgaaaagtcagaccGctcatcacgaacatcatcgt	7	12	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41762554	A	A	41762554	3	1	47	1	0	0	0	0	1	0	0	0	13832	1087	38	4	1015	4	RTF1	15	41762554	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1057506	41762554	60768838	720	51335											
FAM63B	54629	broad.mit.edu	37	chr15	59102306	59102306	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagatactcaataataaaaaTatgttgaattgaatttattg	5	2	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59102306	C	C	59102306	1	2	47	0	1	0	0	0	0	0	0	0	5648	1421	49	5		5	FAM63B	15	59102306	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	17339752	59102306	43429086	721	51336											
CA12	771	broad.mit.edu	37	chr15	63632682	63632682	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggtgatagtgtcagcctCcctccgtagggcataagtgc	13	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63632682	A	A	63632682	1	1	47	0	1	0	0	0	0	0	0	0	2539	870	30	3		3	CA12	15	63632682	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4530376	63632682	38898710	722	51337											
MEGF11	84465	broad.mit.edu	37	chr15	66250171	66250171	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtagcaggatcaaaggaccTctgggattaaattgctcaat	11	7	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66250171	A	A	66250171	1	1	47	0	1	0	0	0	0	0	0	0	9554	1566	54	5		5	MEGF11	15	66250171	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2617489	66250171	36281221	723	51338											
NOX5	79400	broad.mit.edu	37	chr15	69339115	69339115	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttctaagaaatccctaAcactgtccattccaagaccc	3	14	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69339115	C	C	69339115	1	2	47	0	1	0	0	0	0	0	0	0	10654	58	2	5		5	NOX5	15	69339115	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3088944	69339115	33192277	724	51339											
HCN4	10021	broad.mit.edu	37	chr15	73624780	73624780	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaatccaggctgggggtGggatgggaaggcgtcagtct	18	7	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73624780	A	A	73624780	1	1	47	0	1	0	0	0	0	0	0	0	7065	1363	47	4		4	HCN4	15	73624780	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4285665	73624780	28906612	725	51340											
PTPN9	5780	broad.mit.edu	37	chr15	75761285	75761285	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaagggtgccaagctccTccagctgtgccaggcagatg	12	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75761285	C	C	75761285	3	2	47	1	0	0	0	0	1	0	0	0	12902	1551	54	5	178	5	PTPN9	15	75761285	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2136505	75761285	26770107	726	51341											
CIB2	10518	broad.mit.edu	37	chr15	78415907	78415907	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcctagcccagtggccgaGtggggacctgaatgtggctc	14	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78415907	A	A	78415907	1	1	47	0	1	0	0	0	0	0	0	0	3452	1044	36	4		4	CIB2	15	78415907	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2654622	78415907	24115485	727	51342											
STARD5	80765	broad.mit.edu	37	chr15	81610725	81610725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaggtctgagccatgtaCctcaatgcaggaaattatcc	9	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81610725	A	A	81610725	1	1	47	0	1	0	0	0	0	0	0	0	15378	522	18	3		3	STARD5	15	81610725	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3194818	81610725	20920667	728	51343											
AKAP13	11214	broad.mit.edu	37	chr15	86205757	86205757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagggcttttggcttggaGctggcttctgtgtggctggg	17	7	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86205757	T	T	86205757	1	4	47	0	1	0	0	0	0	0	0	0	449	986	34	3		3	AKAP13	15	86205757	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4595032	86205757	16325635	729	51344											
ABHD2	11057	broad.mit.edu	37	chr15	89738694	89738694	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctccagcagccctcctctgGaagctgcgtcccctcacccc	8	21	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89738694	T	T	89738694	1	4	47	0	1	0	0	0	0	0	0	0	82	1189	41	3		3	ABHD2	15	89738694	3'UTR	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3532937	89738694	12792698	730	51345											
RNPS1	10921	broad.mit.edu	37	chr16	2314156	2314156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacaggtcctctccaggCtccaggccagcccgccccac	10	20	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2314156	A	A	2314156	1	1	47	0	1	0	0	0	0	0	0	0	13622	812	28	3		3	RNPS1	16	2314156	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08		2314156	88040597	731	51346											
ABCA3	21	broad.mit.edu	37	chr16	2334331	2334331	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaggtgcagtacctccGcgtctcgtagttctcgtaga	14	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2334331	A	A	2334331	3	1	47	1	0	0	0	0	1	0	0	0	33	1086	38	4	1339	4	ABCA3	16	2334331	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	20175	2334331	88020422	732	51347											
FLYWCH1	84256	broad.mit.edu	37	chr16	2972902	2972902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtggaaaattgatgatcGcatagtggtcaagctcgttt	12	6	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2972902	T	T	2972902	1	4	47	0	1	0	0	0	0	0	0	0	6005	1102	38	3		3	FLYWCH1	16	2972902	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	638571	2972902	87381851	733	51348											
ALG1	56052	broad.mit.edu	37	chr16	5129739	5129739	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtagaattgtttctttttCtaaacacagagtttgaacaa	6	5	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5129739	T	T	5129739	1	4	47	0	1	0	0	0	0	0	0	0	510	928	32	4		4	ALG1	16	5129739	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2156837	5129739	85225014	734	51349											
ABAT	18	broad.mit.edu	37	chr16	8805663	8805663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggatggatggatggatGgatggatggatggatggatg	20	0	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8805663	A	A	8805663	1	1	47	0	1	0	0	0	0	0	0	0	27	1363	47	4		4	ABAT	16	8805663	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3675924	8805663	81549090	735	51350											
ABAT	18	broad.mit.edu	37	chr16	8862172	8862172	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatagtaataataacggcaaCaatagcggcggctgacatta	9	7	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8862172	T	T	8862172	1	4	47	0	1	0	0	0	0	0	0	0	27	493	17	4		4	ABAT	16	8862172	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	56509	8862172	81492581	736	51351											
GRIN2A	2903	broad.mit.edu	37	chr16	10009157	10009157	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttacaagtcagggaaataaGaatcaactggtcaaggaaca	9	6	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10009157	A	A	10009157	1	1	47	0	1	0	0	0	0	0	0	0	6845	957	33	4		4	GRIN2A	16	10009157	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1146985	10009157	80345596	737	51352											
TXNDC11	51061	broad.mit.edu	37	chr16	11782158	11782159	+	Splice_Site	DNP	CC	AA	AA													ttgcctctcatgactccataCctgtttttgaaggactactt							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11782159	AA	AA	11782158	5	1	47	1	0	0	0	0	0	0	1	0	16918	521	18	3	848	3	TXNDC11	16	11782158	Splice_Site	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	1773001	11782158	78572595	738	51353											
SNX29	92017	broad.mit.edu	37	chr16	12269864	12269866	+	Intron	DEL	AAC	-	-													tagagcaagaccttgtctaaAacaacaacaacaacaacaaa					rs141950920		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12269866	-	-	12269864	6	5	47	0	1	1	0	1	0	0	0	0	15012	29	1	0		0	SNX29	16	12269864	Intron	DEL	AAC	TCGA-17-Z014-01A-01W-0746-08	487706	12269864	78084889	739	51354											
GP2	2813	broad.mit.edu	37	chr16	20331682	20331682	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgcagtttgggtctcGcaggtaggcaatgacctcct	13	11	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20331682	A	A	20331682	4	1	47	1	0	0	0	0	0	1	0	0	6647	1095	38	4	872	4	GP2	16	20331682	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	8061818	20331682	70023071	740	51355											
USP31	57478	broad.mit.edu	37	chr16	23109057	23109057	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaaccatatgattatcTcaatagatgcagaaaaggcc	6	8	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23109057	C	C	23109057	1	2	47	0	1	0	0	0	0	0	0	0	17189	1566	54	5		5	USP31	16	23109057	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2777375	23109057	67245696	741	51356											
PLK1	5347	broad.mit.edu	37	chr16	23700734	23700734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtgccgtccggcccatGgggggtggtgttgcagaagt	19	8	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23700734	T	T	23700734	1	4	47	0	1	0	0	0	0	0	0	0	12189	1363	47	2		2	PLK1	16	23700734	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	591677	23700734	66654019	742	51357											
ERN2	10595	broad.mit.edu	37	chr16	23712306	23712306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacaaagagaatccaccCtcccaggaggacagcagtga	9	13	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23712306	A	A	23712306	3	1	47	1	0	0	0	0	1	0	0	0	5280	681	24	2	1491	2	ERN2	16	23712306	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	11572	23712306	66642447	743	51358											
SH2B1	25970	broad.mit.edu	37	chr16	28883246	28883246	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagagggacccccaacaggGacagttcatcccctctcagc	10	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28883246	A	A	28883246	2	1	47	1	0	0	0	0	0	0	0	1	14340	1161	41	4		4	SH2B1	16	28883246	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	5170940	28883246	61471507	744	51359											
ITGAL	3683	broad.mit.edu	37	chr16	30490502	30490502	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagaatctgcagggtcccAtgctgcaggggcgccctggt	15	13	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30490502	C	C	30490502	3	2	47	1	0	0	0	0	1	0	0	0	7956	217	8	5	436	5	ITGAL	16	30490502	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1607256	30490502	59864251	745	51360											
SETD1A	9739	broad.mit.edu	37	chr16	30975604	30975604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccccctacacgtctcggGgcagcaccccctactctcag	8	19	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30975604	T	T	30975604	3	4	47	1	0	0	0	0	1	0	0	0	14243	1232	43	2	847	2	SETD1A	16	30975604	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	485102	30975604	59379149	746	51361											
ITGAD	3681	broad.mit.edu	37	chr16	31434818	31434818	+	Intron	DEL	C	-	-													ctctttcttcagactgacatCccacagcacagcactccctc							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31434818	-	-	31434818	6	5	47	0	1	1	0	1	0	0	0	0	7954	870	30	0		0	ITGAD	16	31434818	Intron	DEL	C	TCGA-17-Z014-01A-01W-0746-08	459214	31434818	58919935	747	51362											
MMP2	4313	broad.mit.edu	37	chr16	55525795	55525796	+	Missense_Mutation	DNP	GG	AT	AT													caagaccctggggccctgatGgcacccatttacacctacac							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	55525796	AT	AT	55525795	3	1	47	1	0	0	0	0	1	0	0	0	9751	1348	47	4	1300	4	MMP2	16	55525795	Missense_Mutation	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	24090977	55525795	34828958	748	51363											
CNGB1	1258	broad.mit.edu	37	chr16	57983037	57983037	+	Intron	DEL	T	-	-													aggctgcattctagtgtgtgTggggggggatgtggagtggt					rs152141	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57983037	-	-	57983037	6	5	47	0	1	1	0	1	0	0	0	0	3632	1711	59	0		0	CNGB1	16	57983037	Intron	DEL	T	TCGA-17-Z014-01A-01W-0746-08	2457242	57983037	32371716	749	51364											
CES2	8824	broad.mit.edu	37	chr16	66976721	66976722	+	Intron	DNP	GG	TT	TT													cctttcccgggaggtgggctGggattctggctgggtctctg					rs28382824		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	66976722	TT	TT	66976721	1	4	47	0	1	0	0	0	0	0	0	0	3300	1363	47	2		2	CES2	16	66976721	Intron	DNP	GG	TCGA-17-Z014-01A-01W-0746-08	8993684	66976721	23378032	750	51365											
CDH3	1001	broad.mit.edu	37	chr16	68712778	68712778	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtttacccaggacaccttCcgagggagtgtcttagaggg	13	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68712778	T	T	68712778	2	4	47	1	0	0	0	0	0	0	0	1	3141	854	30	4		4	CDH3	16	68712778	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1736057	68712778	21641975	751	51366											
NFAT5	10725	broad.mit.edu	37	chr16	69681331	69681331	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacactgaggtacctcgtaaAtcacgaaaacgaaatccaaa	6	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69681331	G	G	69681331	2	3	47	1	0	0	0	0	0	0	0	1	10455	98	4	5		5	NFAT5	16	69681331	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	968553	69681331	20673422	752	51367											
FTSJD1	55783	broad.mit.edu	37	chr16	71318473	71318473	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctttccatgaaagggcttCtagcatcttcctttcattat	5	10	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71318473	A	A	71318473	4	1	47	1	0	0	0	0	0	1	0	0	6150	922	32	3	965	3	FTSJD1	16	71318473	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1637142	71318473	19036280	753	51368											
WDR59	79726	broad.mit.edu	37	chr16	74920408	74920408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagaagaaatgttaagCgaggctgaatattctgagaa	10	6	1	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74920408	A	A	74920408	1	1	47	0	1	0	0	0	0	0	0	0	17435	783	27	3		3	WDR59	16	74920408	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3601935	74920408	15434345	754	51369											
ZMYND15	84225	broad.mit.edu	37	chr17	4646876	4646876	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacagcaccagggccatttCaggcctttcccagccctcaa	7	17	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4646876	G	G	4646876	1	3	47	0	1	0	0	0	0	0	0	0	17834	841	29	4		4	ZMYND15	17	4646876	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08		4646876	76548334	755	51370											
KIF1C	10749	broad.mit.edu	37	chr17	4927272	4927272	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccggggagcgggttctgcAcagcctgaaccccagcactt	12	15	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4927272	G	G	4927272	2	3	47	1	0	0	0	0	0	0	0	1	8355	146	6	5		5	KIF1C	17	4927272	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	280396	4927272	76267938	756	51371											
USP6	9098	broad.mit.edu	37	chr17	5035674	5035674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcacgtcctcagctctgCctgggttgccttacagtgag	12	12	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5035674	A	A	5035674	1	1	47	0	1	0	0	0	0	0	0	0	17213	754	26	3		3	USP6	17	5035674	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	108402	5035674	76159536	757	51372											
USP6	9098	broad.mit.edu	37	chr17	5042785	5042785	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccagcctggccctggcTcagggaggacctcagggttc	15	14	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5042785	A	A	5042785	2	1	47	1	0	0	0	0	0	0	0	1	17213	1538	54	5		5	USP6	17	5042785	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	7111	5042785	76152425	758	51373											
WSCD1	23302	broad.mit.edu	37	chr17	6023587	6023587	+	Intron	DEL	G	-	-													ggggaccggcagccctggcaGggccagcccccgactctgca							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6023587	-	-	6023587	6	5	47	0	1	1	0	1	0	0	0	0	17533	1015	35	0		0	WSCD1	17	6023587	Intron	DEL	G	TCGA-17-Z014-01A-01W-0746-08	980802	6023587	75171623	759	51374											
XAF1	54739	broad.mit.edu	37	chr17	6674154	6674154	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaaagaaagcaccaagaAgcaaaaacaaaaccttggat	6	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6674154	G	G	6674154	3	3	47	1	0	0	0	0	1	0	0	0	17546	72	3	5	722	5	XAF1	17	6674154	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	650567	6674154	74521056	760	51375											
ZBTB4	57659	broad.mit.edu	37	chr17	7366052	7366052	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggagctgtgggagcccCcaccgtgggcctcttggtgc	16	15	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7366052	T	T	7366052	3	4	47	1	0	0	0	0	1	0	0	0	17667	623	22	4	796	4	ZBTB4	17	7366052	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	691898	7366052	73829158	761	51376											
CHD3	1107	broad.mit.edu	37	chr17	7806568	7806568	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactcccctgacccacccgCcactttctcttgcccctgca	4	23	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7806568	T	T	7806568	1	4	47	0	1	0	0	0	0	0	0	0	3357	754	26	4		4	CHD3	17	7806568	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	440516	7806568	73388642	762	51377											
SPDYE4	388333	broad.mit.edu	37	chr17	8656602	8656602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctccagtccaccccatcCctccccacccccacctcctc	2	27	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8656602	A	A	8656602	1	1	47	0	1	0	0	0	0	0	0	0	15149	638	22	2		2	SPDYE4	17	8656602	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	850034	8656602	72538608	763	51378											
WDR16	146845	broad.mit.edu	37	chr17	9501582	9501582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagtatgggaattggatcttCcaaatagaaaaatctggcca	10	6	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9501582	T	T	9501582	3	4	47	1	0	0	0	0	1	0	0	0	17403	855	30	4	586	4	WDR16	17	9501582	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	844980	9501582	71693628	764	51379											
MYH4	4622	broad.mit.edu	37	chr17	10354557	10354557	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaatgaatgtacagagcttGagaaattacttgtatttgat	8	3	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10354557	C	C	10354557	1	2	47	0	1	0	0	0	0	0	0	0	10131	1305	45	4		4	MYH4	17	10354557	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	852975	10354557	70840653	765	51380											
DNAH9	1770	broad.mit.edu	37	chr17	11520631	11520631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagccttctctctgcttGttgttttgcaggtcttttac	7	11	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11520631	T	T	11520631	1	4	47	0	1	0	0	0	0	0	0	0	4648	1392	48	3		3	DNAH9	17	11520631	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1166074	11520631	69674579	766	51381											
DNAH9	1770	broad.mit.edu	37	chr17	11622753	11622753	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accaccaaggacctgggccgCgcactgggcatcctggtcta	12	15	1	0	rs111713622		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11622753	G	G	11622753	2	3	47	1	0	0	0	0	0	0	0	1	4648	755	27	4		4	DNAH9	17	11622753	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	102122	11622753	69572457	767	51382											
DNAH9	1770	broad.mit.edu	37	chr17	11681984	11681984	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatggacaaggaaggcagCagtggagacggcgaaaagag	17	6	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11681984	G	G	11681984	1	3	47	0	1	0	0	0	0	0	0	0	4648	725	25	4		4	DNAH9	17	11681984	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	59231	11681984	69513226	768	51383											
EFCAB5	374786	broad.mit.edu	37	chr17	28380844	28380844	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacacaaagggtcagtagcAgaacaaggatcacgcagaat	11	9	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28380844	T	T	28380844	2	4	47	1	0	0	0	0	0	0	0	1	4978	175	7	5		5	EFCAB5	17	28380844	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	16698860	28380844	52814366	769	51384											
ACCN1	40	broad.mit.edu	37	chr17	31351415	31351415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttatctgaaacccagggCtctgtgctcttcctgctggg	10	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31351415	A	A	31351415	1	1	47	0	1	0	0	0	0	0	0	0	128	812	28	3		3	ACCN1	17	31351415	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2970571	31351415	49843795	770	51385											
MRM1	79922	broad.mit.edu	37	chr17	34964752	34964752	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagaaggcagcttctccaAgacccccaagaaccctcagc	9	15	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34964752	T	T	34964752	3	4	47	1	0	0	0	0	1	0	0	0	9865	69	3	5	981	5	MRM1	17	34964752	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	3613337	34964752	46230458	771	51386											
PPP1R1B	84152	broad.mit.edu	37	chr17	37788632	37788633	+	Intron	DEL	CG	-	-													cgaagtgaactctcctccccCgctgggggagaaggaagctg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37788633	-	-	37788632	6	5	47	0	1	1	0	1	0	0	0	0	12469	667	23	0		0	PPP1R1B	17	37788632	Intron	DEL	CG	TCGA-17-Z014-01A-01W-0746-08	2823880	37788632	43406578	772	51387											
KRT33B	3884	broad.mit.edu	37	chr17	39521815	39521815	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgacttcctaatggagAaaagggaagaaataaaccca	10	6	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39521815	T	T	39521815	1	4	47	0	1	0	0	0	0	0	0	0	8541	261	9	5		5	KRT33B	17	39521815	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1733183	39521815	41673395	773	51388											
JUP	3728	broad.mit.edu	37	chr17	39778587	39778587	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcctcagcatctttgaccTtctgccccagccacctcacc	4	20	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39778587	C	C	39778587	1	2	47	0	1	0	0	0	0	0	0	0	8042	1624	56	5		5	JUP	17	39778587	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	256772	39778587	41416623	774	51389											
ATP6V0A1	535	broad.mit.edu	37	chr17	40659728	40659728	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaagaggcctcactccagtCttctccttgaaaaataaaaa	5	11	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40659728	A	A	40659728	1	1	47	0	1	0	0	0	0	0	0	0	1172	928	32	3		3	ATP6V0A1	17	40659728	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	881141	40659728	40535482	775	51390											
SLC4A1	6521	broad.mit.edu	37	chr17	42337143	42337143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctctctccttgccccacCctgaccctgaccctgaccct	5	21	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42337143	A	A	42337143	1	1	47	0	1	0	0	0	0	0	0	0	14764	638	22	2		2	SLC4A1	17	42337143	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1677415	42337143	38858067	776	51391											
NSF	4905	broad.mit.edu	37	chr17	44788392	44788392	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggtatcatcaaatggggtGacccagttactcgagttcta	10	9	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44788392	T	T	44788392	3	4	47	1	0	0	0	0	1	0	0	0	10766	1290	45	3	1588	3	NSF	17	44788392	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2451249	44788392	36406818	777	51392											
ITGB3	3690	broad.mit.edu	37	chr17	45363551	45363551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactatctatatttgtcccCtctctttcctcccaattccc	1	18	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45363551	A	A	45363551	1	1	47	0	1	0	0	0	0	0	0	0	7965	696	24	2		2	ITGB3	17	45363551	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	575159	45363551	35831659	778	51393											
UTP18	51096	broad.mit.edu	37	chr17	49346142	49346142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgctttaaatgtatcaaGctttatggacatgtagtggt	9	4	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49346142	T	T	49346142	1	4	47	0	1	0	0	0	0	0	0	0	17225	986	34	3		3	UTP18	17	49346142	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3982591	49346142	31849068	779	51394											
CUEDC1	404093	broad.mit.edu	37	chr17	56010565	56010565	+	Intron	DEL	G	-	-													gacagcctcacgggcagcaaGgggggagaaccactgaacag					rs67731750		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56010565	-	-	56010565	6	5	47	0	1	1	0	1	0	0	0	0	4085	1015	35	0		0	CUEDC1	17	56010565	Intron	DEL	G	TCGA-17-Z014-01A-01W-0746-08	6664423	56010565	25184645	780	51395											
C17orf47	284083	broad.mit.edu	37	chr17	56620020	56620020	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaaacctttgaatgggttGtttgcaggtgtgcttggggg	16	4	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56620020	A	A	56620020	4	1	47	1	0	0	0	0	0	1	0	0	1874	1386	48	4	192	4	C17orf47	17	56620020	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	609455	56620020	24575190	781	51396											
GDPD1	284161	broad.mit.edu	37	chr17	57348398	57348398	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaagttattgcttcagCtatatttattaaatactacc	4	7	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57348398	G	G	57348398	1	3	47	0	1	0	0	0	0	0	0	0	6387	812	28	4		4	GDPD1	17	57348398	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	728378	57348398	23846812	782	51397											
TUBD1	51174	broad.mit.edu	37	chr17	57958410	57958410	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgaaagagtcacatttctCcacttccttccggattatgt	6	11	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57958410	A	A	57958410	4	1	47	1	0	0	0	0	0	1	0	0	16888	864	30	3	1003	3	TUBD1	17	57958410	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	610012	57958410	23236800	783	51398											
TANC2	26115	broad.mit.edu	37	chr17	61089918	61089919	+	Intron	INS	-	C	C													gtcactgttacttagatatgINScccatatatttgaccttttc					rs149453360	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61089919	C	C	61089918	6	5	47	0	1	1	1	0	0	0	0	0	15664	1334	46	0		0	TANC2	17	61089918	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	3131508	61089918	20105292	784	51399											
LRRC37A3	374819	broad.mit.edu	37	chr17	62856868	62856868	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaacagtgatttcacatcTaggttaacggctgagaaata	9	6	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62856868	A	A	62856868	2	1	47	1	0	0	0	0	0	0	0	1	9080	1509	53	5		5	LRRC37A3	17	62856868	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1766950	62856868	18338342	785	51400											
GRB2	2885	broad.mit.edu	37	chr17	73389716	73389716	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgatggcttccattctgagCgctgctcagtgctcagcagc	12	13	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73389716	G	G	73389716	1	3	47	0	1	0	0	0	0	0	0	0	6824	783	27	4		4	GRB2	17	73389716	5'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	10532848	73389716	7805494	786	51401											
MXRA7	439921	broad.mit.edu	37	chr17	74684255	74684255	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accatccaagtcctgctcctCttcctgcaagacaaggacag	7	15	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74684255	T	T	74684255	3	4	47	1	0	0	0	0	1	0	0	0	10098	922	32	4	335	4	MXRA7	17	74684255	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1294539	74684255	6510955	787	51402											
MGAT5B	146664	broad.mit.edu	37	chr17	74928874	74928874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtgagcgcggcccctgCgcgcgggaagcaccagcctg	17	14	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74928874	A	A	74928874	1	1	47	0	1	0	0	0	0	0	0	0	9642	783	27	3		3	MGAT5B	17	74928874	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	244619	74928874	6266336	788	51403											
CCDC57	284001	broad.mit.edu	37	chr17	80130706	80130706	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggatggaaagtctttacTtatttcttcttcatgctgcc	7	9	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80130706	C	C	80130706	3	2	47	1	0	0	0	0	1	0	0	0	2855	1609	56	5	1238	5	CCDC57	17	80130706	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	5201832	80130706	1064504	789	51404											
LPIN2	9663	broad.mit.edu	37	chr18	2925289	2925289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgtggctcaggggctctGtggggatggggtccactgtg	19	9	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2925289	T	T	2925289	3	4	47	1	0	0	0	0	1	0	0	0	9006	1377	48	3	847	3	LPIN2	18	2925289	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08		2925289	75151959	790	51405											
FAM38B	63895	broad.mit.edu	37	chr18	10690977	10690977	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattctcaaatattatcacaGtaattatgcaggatactaac	4	8	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10690977	A	A	10690977	1	1	47	0	1	0	0	0	0	0	0	0	5606	1044	36	4		4	FAM38B	18	10690977	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	7765688	10690977	67386271	791	51406											
CEP192	55125	broad.mit.edu	37	chr18	13049233	13049233	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgggatttatctttgcccAaagaacaaactactcaagac	6	10	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13049233	G	G	13049233	3	3	47	1	0	0	0	0	1	0	0	0	3281	131	5	5	2501	5	CEP192	18	13049233	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2358256	13049233	65028015	792	51407											
KCTD1	284252	broad.mit.edu	37	chr18	24173982	24173982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagaggaaataccccaaccCcatccttgatgccttcactt	5	14	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24173982	A	A	24173982	1	1	47	0	1	0	0	0	0	0	0	0	8166	638	22	2		2	KCTD1	18	24173982	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	11124749	24173982	53903266	793	51408											
DSC3	1825	broad.mit.edu	37	chr18	28607461	28607461	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttccttccttccttccttCcttctttccttccttttctg	1	18	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28607461	A	A	28607461	1	1	47	0	1	0	0	0	0	0	0	0	4807	870	30	3		3	DSC3	18	28607461	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	4433479	28607461	49469787	794	51409											
RNF125	54941	broad.mit.edu	37	chr18	29617328	29617328	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccccatggtacgcaccTtttttttttttttttttttt	4	9	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29617328	C	C	29617328	1	2	47	0	1	0	0	0	0	0	0	0	13545	1624	56	5		5	RNF125	18	29617328	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1009867	29617328	48459920	795	51410											
NOL4	8715	broad.mit.edu	37	chr18	31599491	31599491	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtctcccatctccctgcTgtgtgttccccctgaagcaa	9	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31599491	G	G	31599491	3	3	47	1	0	0	0	0	1	0	0	0	10619	1580	55	5	1093	5	NOL4	18	31599491	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1982163	31599491	46477757	796	51411											
FHOD3	80206	broad.mit.edu	37	chr18	34174679	34174679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgctgggtgcccgctgcGgttaggaagatgctctctgg	16	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34174679	T	T	34174679	1	4	47	0	1	0	0	0	0	0	0	0	5940	1131	39	1		1	FHOD3	18	34174679	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2575188	34174679	43902569	797	51412											
RAB27B	5874	broad.mit.edu	37	chr18	52555206	52555206	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatcaataacttgctggttCcatctgctttcttttcaagg	6	9	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52555206	T	T	52555206	1	4	47	0	1	0	0	0	0	0	0	0	13023	870	30	4		4	RAB27B	18	52555206	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	18380527	52555206	25522042	798	51413											
NARS	4677	broad.mit.edu	37	chr18	55282959	55282959	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctcttcgtaaactatcttCtgcctaattttaatgatgaa	4	8	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55282959	T	T	55282959	3	4	47	1	0	0	0	0	1	0	0	0	10264	922	32	4	1434	4	NARS	18	55282959	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2727753	55282959	22794289	799	51414											
CDH20	28316	broad.mit.edu	37	chr18	59174687	59174687	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccaaggacttggatgaagGcatcaatgcagagatgaaat	12	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59174687	C	C	59174687	3	2	47	1	0	0	0	0	1	0	0	0	3136	1203	42	4	929	4	CDH20	18	59174687	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3891728	59174687	18902561	800	51415											
CDH20	28316	broad.mit.edu	37	chr18	59206373	59206373	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgagaacgccaaggcaGgacaggtaaggtggcctgtg	16	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59206373	T	T	59206373	4	4	47	1	0	0	0	0	0	1	0	0	3136	1001	35	2	1555	2	CDH20	18	59206373	Nonsense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	31686	59206373	18870875	801	51416											
SERPINB5	5268	broad.mit.edu	37	chr18	61154283	61154283	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgaaactaatcaagcgGctctacgtagacaaatctct	6	11	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61154283	T	T	61154283	2	4	47	1	0	0	0	0	0	0	0	1	14217	1190	42	3		3	SERPINB5	18	61154283	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1947910	61154283	16922965	802	51417											
SERPINB2	5055	broad.mit.edu	37	chr18	61569691	61569691	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgaaaagctaaacattggAtacatagaagacctaaaggc	9	7	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61569691	T	T	61569691	2	4	47	1	0	0	0	0	0	0	0	1	14214	320	12	5		5	SERPINB2	18	61569691	Silent	SNP	A	TCGA-17-Z014-01A-01W-0746-08	415408	61569691	16507557	803	51418											
TLE2	7089	broad.mit.edu	37	chr19	3028692	3028692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccgcggcccctggggcGgcccccctcacctgtggtat	12	19	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3028692	T	T	3028692	1	4	47	0	1	0	0	0	0	0	0	0	16062	1131	39	1		1	TLE2	19	3028692	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08		3028692	56100291	804	51419											
EBI3	10148	broad.mit.edu	37	chr19	4234679	4234679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtcaagcccgaccctcCagaaggcgtgcgcctaagcc	11	16	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4234679	A	A	4234679	3	1	47	1	0	0	0	0	1	0	0	0	4923	594	21	2	409	2	EBI3	19	4234679	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1205987	4234679	54894304	805	51420											
UHRF1	29128	broad.mit.edu	37	chr19	4954525	4954525	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatctcgtgggtgtggggtGagcgtcttgtgtgtggggga	21	4	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4954525	T	T	4954525	1	4	47	0	1	0	0	0	0	0	0	0	17093	1305	45	3		3	UHRF1	19	4954525	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	719846	4954525	54174458	806	51421											
MYO1F	4542	broad.mit.edu	37	chr19	8590441	8590441	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggccattcccttccgcgTaggctctgaaagaagagtgt	11	11	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8590441	A	A	8590441	3	1	47	1	0	0	0	0	1	0	0	0	10167	1638	57	5	536	5	MYO1F	19	8590441	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3635916	8590441	50538542	807	51422											
MUC16	94025	broad.mit.edu	37	chr19	9089919	9089919	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcggatgtctcagatgaTgctgtggctctggtgagtag	15	7	3	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9089919	G	G	9089919	2	3	47	1	0	0	0	0	0	0	0	1	10067	1451	51	5		5	MUC16	19	9089919	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	499478	9089919	50039064	808	51423											
ZNF561	93134	broad.mit.edu	37	chr19	9721688	9721689	+	Nonsense_Mutation	DNP	CC	AA	AA													tttctcatcagtgtggattcCcatatgattatcaaggcttg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	9721689	AA	AA	9721688	4	1	47	1	0	0	0	0	0	1	0	0	18119	632	22	2	815	2	ZNF561	19	9721688	Nonsense_Mutation	DNP	CC	TCGA-17-Z014-01A-01W-0746-08	631769	9721688	49407295	809	51424											
DNMT1	1786	broad.mit.edu	37	chr19	10257064	10257064	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggggcaggtacacaccatCaccaactcggtacaggatgc	12	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10257064	A	A	10257064	3	1	47	1	0	0	0	0	1	0	0	0	4715	826	29	3	2097	3	DNMT1	19	10257064	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	535376	10257064	48871919	810	51425											
ICAM5	7087	broad.mit.edu	37	chr19	10404530	10404530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcatcgaggggctgttgcGtgtggcccgggagcatgcgg	19	10	1	0	rs147074144		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10404530	T	T	10404530	3	4	47	1	0	0	0	0	1	0	0	0	7553	1145	40	3	1648	3	ICAM5	19	10404530	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	147466	10404530	48724453	811	51426											
AP1M2	10053	broad.mit.edu	37	chr19	10692527	10692527	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcccggatgctctcctcctCcagctccttgaagtattcgc	8	16	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10692527	A	A	10692527	4	1	47	1	0	0	0	0	0	1	0	0	737	864	30	3	1012	3	AP1M2	19	10692527	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	287997	10692527	48436456	812	51427											
SYCE2	256126	broad.mit.edu	37	chr19	13011420	13011420	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgttgtggtcattataaaTctgatagatcctctcctcta	6	9	4	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13011420	C	C	13011420	3	2	47	1	0	0	0	0	1	0	0	0	15548	1435	50	5	319	5	SYCE2	19	13011420	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2318893	13011420	46117563	813	51428											
CYP4F12	66002	broad.mit.edu	37	chr19	15807817	15807817	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagaccacactgagccccgCaggaagctggaattgatcat	10	13	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15807817	G	G	15807817	2	3	47	1	0	0	0	0	0	0	0	1	4220	697	25	4		4	CYP4F12	19	15807817	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2796397	15807817	43321166	814	51429											
UNC13A	23025	broad.mit.edu	37	chr19	17752414	17752414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagtgcaaggggtcgccgGgggtcagaggtcccagggtc	20	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17752414	T	T	17752414	1	4	47	0	1	0	0	0	0	0	0	0	17110	1247	43	2		2	UNC13A	19	17752414	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1944597	17752414	41376569	815	51430											
NDUFA13	51079	broad.mit.edu	37	chr19	19626829	19626829	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaggcgagtcacgccctgtCtgggcaaaagaggagtaaag	14	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19626829	G	G	19626829	3	3	47	1	0	0	0	0	1	0	0	0	10358	928	32	4		4	NDUFA13	19	19626829	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1874415	19626829	39502154	816	51431											
ZNF85	7639	broad.mit.edu	37	chr19	21132839	21132839	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataagataattcatactggaGagaaaccatacaaatgtgaa	7	5	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21132839	C	C	21132839	3	2	47	1	0	0	0	0	1	0	0	0	18322	943	33	4	1533	4	ZNF85	19	21132839	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1506010	21132839	37996144	817	51432											
ZNF208	7757	broad.mit.edu	37	chr19	22156216	22156216	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaattaccttatgtttagtAaggattgagaatgtactgaa	9	3	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22156216	G	G	22156216	1	3	47	0	1	0	0	0	0	0	0	0	17892	349	13	5		5	ZNF208	19	22156216	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1023377	22156216	36972767	818	51433											
ZNF492	57615	broad.mit.edu	37	chr19	22847646	22847646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcatactggagagaagcCctacaaatgtgaagaatgtg	10	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22847646	A	A	22847646	3	1	47	1	0	0	0	0	1	0	0	0	18070	623	22	2	1185	2	ZNF492	19	22847646	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	691430	22847646	36281337	819	51434											
NPHS1	4868	broad.mit.edu	37	chr19	36326483	36326483	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgggattacaggcgtgagCgactgagcttggccagaact	15	8	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36326483	T	T	36326483	1	4	47	0	1	0	0	0	0	0	0	0	10677	783	27	4		4	NPHS1	19	36326483	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	13478837	36326483	22802500	820	51435											
ZNF585A	199704	broad.mit.edu	37	chr19	37647297	37647297	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatgtgcacagtcagctTagagggttggagagactata	12	6	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37647297	A	A	37647297	1	1	47	0	1	0	0	0	0	0	0	0	18144	1769	61	5		5	ZNF585A	19	37647297	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1320814	37647297	21481686	821	51436											
ZNF585B	92285	broad.mit.edu	37	chr19	37698043	37698043	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatctcaaccctttttgtcTagggtgcctgaagtttagtg	11	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37698043	A	A	37698043	1	1	47	0	1	0	0	0	0	0	0	0	18145	1537	53	5		5	ZNF585B	19	37698043	5'UTR	SNP	T	TCGA-17-Z014-01A-01W-0746-08	50746	37698043	21430940	822	51437											
ZNF573	126231	broad.mit.edu	37	chr19	38287064	38287064	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgaggctgggatgccaCgctgctcctcccggattctg	14	14	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38287064	T	T	38287064	1	4	47	0	1	0	0	0	0	0	0	0	18132	551	19	4		4	ZNF573	19	38287064	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	589021	38287064	20841919	823	51438											
PPP1R14A	94274	broad.mit.edu	37	chr19	38743018	38743018	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaacaaaacagtaaatgActaacacctactcccctcca	2	14	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38743018	T	T	38743018	1	4	47	0	1	0	0	0	0	0	0	0	12460	290	10	5		5	PPP1R14A	19	38743018	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	455954	38743018	20385965	824	51439											
SERTAD3	29946	broad.mit.edu	37	chr19	40947447	40947447	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccagttcattccactcccAagaacctggggcacagaaga	8	13	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40947447	T	T	40947447	3	4	47	1	0	0	0	0	1	0	0	0	14235	130	5	5	53	5	SERTAD3	19	40947447	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	2204429	40947447	18181536	825	51440											
CEACAM5	1048	broad.mit.edu	37	chr19	42231194	42231194	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctcagctggggccactgtCggcatcatgattggagtgct	13	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42231194	T	T	42231194	2	4	47	1	0	0	0	0	0	0	0	1	3225	871	31	4		4	CEACAM5	19	42231194	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1283747	42231194	16897789	826	51441											
ZNF574	64763	broad.mit.edu	37	chr19	42584008	42584008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtactcatggggtaggggGtgtccctctgcccacaacac	13	13	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42584008	T	T	42584008	3	4	47	1	0	0	0	0	1	0	0	0	18133	1261	44	3	1252	3	ZNF574	19	42584008	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	352814	42584008	16544975	827	51442											
PAFAH1B3	5050	broad.mit.edu	37	chr19	42804211	42804211	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgctctgctgtgtgtcCgtggttgttggtgcccaccc	12	14	1	0	rs145175030		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42804211	A	A	42804211	4	1	47	1	0	0	0	0	0	1	0	0	11480	661	23	1	384	1	PAFAH1B3	19	42804211	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	220203	42804211	16324772	828	51443											
PSG6	5675	broad.mit.edu	37	chr19	43579454	43579454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaggcctggcctctggcCatgtgtatttgggatggcag	16	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43579454	A	A	43579454	1	1	47	0	1	0	0	0	0	0	0	0	12765	609	21	2		2	PSG6	19	43579454	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	775243	43579454	15549529	829	51444											
CD177	57126	broad.mit.edu	37	chr19	43866067	43866067	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agggactgggggcctggactCctgggtctgagggaggaggg	22	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43866067	G	G	43866067	1	3	47	0	1	0	0	0	0	0	0	0	3001	870	30	4		4	CD177	19	43866067	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	286613	43866067	15262916	830	51445											
KCNN4	3783	broad.mit.edu	37	chr19	44276029	44276030	+	Intron	INS	-	A	A													gggctctgggggccccagacINSactcaagtttctcaggagct							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44276030	A	A	44276029	6	5	47	0	1	1	1	0	0	0	0	0	8151	493	17	0		0	KCNN4	19	44276029	Intron	INS	-	TCGA-17-Z014-01A-01W-0746-08	409962	44276029	14852954	831	51446											
GIPR	2696	broad.mit.edu	37	chr19	46178075	46178075	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggaccaggcccttgcgctGtggaaccaggtgggcatcct	16	12	0	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46178075	C	C	46178075	2	2	47	1	0	0	0	0	0	0	0	1	6459	1364	48	4		4	GIPR	19	46178075	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1902046	46178075	12950908	832	51447											
SLC17A7	57030	broad.mit.edu	37	chr19	49934329	49934329	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgcccgacagtgtgccCacgccgttggagatgcccat	11	15	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49934329	A	A	49934329	2	1	47	1	0	0	0	0	0	0	0	1	14535	581	21	2		2	SLC17A7	19	49934329	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3756254	49934329	9194654	833	51448											
CPT1C	126129	broad.mit.edu	37	chr19	50209333	50209333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctgcccccacgaggaaCatctggcagctctgacagct	11	16	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50209333	A	A	50209333	3	1	47	1	0	0	0	0	1	0	0	0	3865	478	17	3	1166	3	CPT1C	19	50209333	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	275004	50209333	8919650	834	51449											
SHANK1	50944	broad.mit.edu	37	chr19	51165487	51165487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggtcggtgagagggagCgcgaggcccctgacaaggct	20	10	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51165487	A	A	51165487	3	1	47	1	0	0	0	0	1	0	0	0	14377	768	27	3	268	3	SHANK1	19	51165487	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	956154	51165487	7963496	835	51450											
SIGLEC5	8778	broad.mit.edu	37	chr19	52132629	52132629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggagacattgagctggaCagttctctccgtggtcacct	11	11	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52132629	A	A	52132629	3	1	47	1	0	0	0	0	1	0	0	0	14424	478	17	3	1001	3	SIGLEC5	19	52132629	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	967142	52132629	6996354	836	51451											
ZNF610	162963	broad.mit.edu	37	chr19	52856958	52856958	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttgacattcatggacgtGgccatcgaattctctcagga	10	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52856958	T	T	52856958	2	4	47	1	0	0	0	0	0	0	0	1	18163	1335	47	2		2	ZNF610	19	52856958	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	724329	52856958	6272025	837	51452											
ZNF83	55769	broad.mit.edu	37	chr19	53117519	53117519	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaagccttgatgaaaggccTtgccacgctcactacatttg	9	11	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53117519	A	A	53117519	3	1	47	1	0	0	0	0	1	0	0	0	18312	1609	56	5	1255	5	ZNF83	19	53117519	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	260561	53117519	6011464	838	51453											
ZNF28	7576	broad.mit.edu	37	chr19	53303431	53303431	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgactgaaaactttctcaCattcttcacatttgtacggt	6	10	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53303431	A	A	53303431	3	1	47	1	0	0	0	0	1	0	0	0	17939	478	17	3	493	3	ZNF28	19	53303431	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	185912	53303431	5825552	839	51454											
LENG8	114823	broad.mit.edu	37	chr19	54967459	54967459	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctggggctgtgtgtgaggGagggggaggcgtttcaggcc	23	6	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54967459	T	T	54967459	1	4	47	0	1	0	0	0	0	0	0	0	8796	1189	41	3		3	LENG8	19	54967459	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1664028	54967459	4161524	840	51455											
NLRP8	126205	broad.mit.edu	37	chr19	56466894	56466894	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcaccgccttccttggcatGagtattcttcggagaattgc	10	11	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56466894	A	A	56466894	3	1	47	1	0	0	0	0	1	0	0	0	10578	1290	45	4	1480	4	NLRP8	19	56466894	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1499435	56466894	2662089	841	51456											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56733253	56733253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattggaggctaataagctgCatgaagcgcttcccacagag	11	9	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56733253	A	A	56733253	3	1	47	1	0	0	0	0	1	0	0	0	18367	710	25	3	312	3	ZSCAN5A	19	56733253	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	266359	56733253	2395730	842	51457											
ZNF772	400720	broad.mit.edu	37	chr19	57985635	57985636	+	Missense_Mutation	DNP	CA	AG	AG													tgtgtttcctggtgctcagcCaagtgcaaaatgtcttttaa							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	57985636	AG	AG	57985635	3	1	47	1	0	0	0	0	1	0	0	0	18274	593	21	2	996	2	ZNF772	19	57985635	Missense_Mutation	DNP	CA	TCGA-17-Z014-01A-01W-0746-08	1252382	57985635	1143348	843	51458											
ZNF418	147686	broad.mit.edu	37	chr19	58438098	58438098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatttcccacattcattaCattcatatggcctttctcca	3	12	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58438098	A	A	58438098	3	1	47	1	0	0	0	0	1	0	0	0	18022	478	17	3	583	3	ZNF418	19	58438098	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	452463	58438098	690885	844	51459											
TGM6	343641	broad.mit.edu	37	chr20	2381128	2381128	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaggcccgagggctctggAagcccagcaggtggagcaag	16	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2381128	G	G	2381128	1	3	47	0	1	0	0	0	0	0	0	0	15957	261	9	5		5	TGM6	20	2381128	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08		2381128	60644392	845	51460											
MAVS	57506	broad.mit.edu	37	chr20	3838457	3838457	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaccagagctaccagcctcGtgagcgtcctgcccttgccc	9	18	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3838457	C	C	3838457	5	2	47	1	0	0	0	0	0	0	1	0	9430	1159	40	4	299	4	MAVS	20	3838457	Splice_Site	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1457329	3838457	59187063	846	51461											
PLCB1	23236	broad.mit.edu	37	chr20	8630053	8630053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttcagcagatcggaagcGagttgaaactgctttagagg	13	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8630053	T	T	8630053	3	4	47	1	0	0	0	0	1	0	0	0	12122	1058	37	3	577	3	PLCB1	20	8630053	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4791596	8630053	54395467	847	51462											
TASP1	55617	broad.mit.edu	37	chr20	13367596	13367596	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtgggggtttggtttacGgataattgtatcacccagtt	13	5	1	0	rs150811822	by1000genomes	TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13367596	A	A	13367596	1	1	47	0	1	0	0	0	0	0	0	0	15708	1131	39	4		4	TASP1	20	13367596	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4737543	13367596	49657924	848	51463											
OVOL2	58495	broad.mit.edu	37	chr20	18005403	18005403	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacgagctgcccggatgggcActgttcacgtgcaggtacag	14	11	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18005403	T	T	18005403	3	4	47	1	0	0	0	0	1	0	0	0	11421	156	6	5	126	5	OVOL2	20	18005403	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	4637807	18005403	45020117	849	51464											
C20orf185	359710	broad.mit.edu	37	chr20	31654530	31654530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatatgtatgaaattggcaGggtagggggaagagtggtga	17	1	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31654530	T	T	31654530	1	4	47	0	1	0	0	0	0	0	0	0	2119	1015	35	2		2	C20orf185	20	31654530	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	13649127	31654530	31370990	850	51465											
C20orf71	128861	broad.mit.edu	37	chr20	31811863	31811863	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggggaggtgcaaggcctGtgaagagggaaggtaggaag	21	4	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31811863	A	A	31811863	1	1	47	0	1	0	0	0	0	0	0	0	2139	1392	48	4		4	C20orf71	20	31811863	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	157333	31811863	31213657	851	51466											
ZNF341	84905	broad.mit.edu	37	chr20	32332941	32332941	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttctctgcgggaagtgtAagaagcaattcaactcgctg	10	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32332941	T	T	32332941	4	4	47	1	0	0	0	0	0	1	0	0	17983	363	13	5	185	5	ZNF341	20	32332941	Nonsense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	521078	32332941	30692579	852	51467											
NDRG3	57446	broad.mit.edu	37	chr20	35284998	35284998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaattgctctgaacacCccaagtcctttcaaacagaa	6	11	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35284998	A	A	35284998	1	1	47	0	1	0	0	0	0	0	0	0	10348	638	22	2		2	NDRG3	20	35284998	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2952057	35284998	27740522	853	51468											
LBP	3929	broad.mit.edu	37	chr20	36997831	36997831	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttcagagcctttgcaaatGctgtttccttttccccacat	7	12	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36997831	A	A	36997831	1	1	47	0	1	0	0	0	0	0	0	0	8723	1334	46	4		4	LBP	20	36997831	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1712833	36997831	26027689	854	51469											
CHD6	84181	broad.mit.edu	37	chr20	40050438	40050438	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatgctgggcatagtttcTataggcatccaggaaggaca	11	7	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40050438	C	C	40050438	3	2	47	1	0	0	0	0	1	0	0	0	3360	1530	53	5	3338	5	CHD6	20	40050438	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3052607	40050438	22975082	855	51470											
PTPRT	11122	broad.mit.edu	37	chr20	40730771	40730771	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctcggcttacatccatcAgtgctgcgttgatgtaattg	12	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40730771	T	T	40730771	3	4	47	1	0	0	0	0	1	0	0	0	12920	188	7	5	642	5	PTPRT	20	40730771	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	680333	40730771	22294749	856	51471											
SLC13A3	64849	broad.mit.edu	37	chr20	45228544	45228544	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaaatggtttgcagcattGaattcttgttcatcatctcc	8	8	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45228544	C	C	45228544	1	2	47	0	1	0	0	0	0	0	0	0	14506	1305	45	4		4	SLC13A3	20	45228544	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4497773	45228544	17796976	857	51472											
SULF2	55959	broad.mit.edu	37	chr20	46295154	46295154	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcggcatcacccaggCctacgtggtacaccctgccg	13	16	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46295154	G	G	46295154	3	3	47	1	0	0	0	0	1	0	0	0	15489	739	26	4	997	4	SULF2	20	46295154	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1066610	46295154	16730366	858	51473											
PREX1	57580	broad.mit.edu	37	chr20	47268161	47268161	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatctgagcagagatcagaGggagggaggaaggcgaggcg	19	6	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47268161	C	C	47268161	1	2	47	0	1	0	0	0	0	0	0	0	12582	1015	35	4		4	PREX1	20	47268161	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	973007	47268161	15757359	859	51474											
PREX1	57580	broad.mit.edu	37	chr20	47269935	47269935	+	Missense_Mutation	SNP	G	T	T													cgactccggaatgcctggaaGtgctccaggacctcaggggc							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47269935	T	T	47269935	3	4	47	1	0	0	0	0	1	0	0	0	12582	1020	36	3	2753	3	PREX1	20	47269935	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1774	47269935	15755585	860	51475	246	2									
PREX1	57580	broad.mit.edu	37	chr20	47269937	47269937	+	Missense_Mutation	SNP	G	T	T													actccggaatgcctggaagtGctccaggacctcaggggcac							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47269937	T	T	47269937	3	4	47	1	0	0	0	0	1	0	0	0	12582	1319	46	3	2755	3	PREX1	20	47269937	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2	47269937	15755583	861	51476	246	2									
SPATA2	9825	broad.mit.edu	37	chr20	48525056	48525056	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggggctaccttatctcctCcatggcttctggattagagg	13	10	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48525056	A	A	48525056	1	1	47	0	1	0	0	0	0	0	0	0	15121	870	30	3		3	SPATA2	20	48525056	5'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1255119	48525056	14500464	862	51477											
MOCS3	27304	broad.mit.edu	37	chr20	49575858	49575858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcgtgccgtacactcaggCccttacgccagccactgccc	9	18	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49575858	A	A	49575858	3	1	47	1	0	0	0	0	1	0	0	0	9786	739	26	3	481	3	MOCS3	20	49575858	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1050802	49575858	13449662	863	51478											
SALL4	57167	broad.mit.edu	37	chr20	50407375	50407375	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaccaactgctgcaatttCagggtctctgaccctggctc	8	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50407375	T	T	50407375	2	4	47	1	0	0	0	0	0	0	0	1	13924	813	29	4		4	SALL4	20	50407375	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	831517	50407375	12618145	864	51479											
TSHZ2	128553	broad.mit.edu	37	chr20	51872217	51872217	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatgtcatggacaagccGgtcttgagtcctgcctccac	9	14	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51872217	C	C	51872217	2	2	47	1	0	0	0	0	0	0	0	1	16749	1103	39	4		4	TSHZ2	20	51872217	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1464842	51872217	11153303	865	51480											
BCAS1	8537	broad.mit.edu	37	chr20	52611506	52611506	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatccaaatccaattcTatgcgcaaacccaaatatat	2	12	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52611506	C	C	52611506	1	2	47	0	1	0	0	0	0	0	0	0	1355	1537	53	5		5	BCAS1	20	52611506	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	739289	52611506	10414014	866	51481											
CASS4	57091	broad.mit.edu	37	chr20	55012273	55012273	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgactgctctgacgagctGgctttcagcagaggggacat	13	11	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55012273	T	T	55012273	2	4	47	1	0	0	0	0	0	0	0	1	2709	1335	47	2		2	CASS4	20	55012273	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2400767	55012273	8013247	867	51482											
TFAP2C	7022	broad.mit.edu	37	chr20	55206242	55206242	+	Intron	DEL	T	-	-													cgcactaacggggtctcctgTttttttttttccctccagga							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55206242	-	-	55206242	6	5	47	0	1	1	0	1	0	0	0	0	15912	1740	60	0		0	TFAP2C	20	55206242	Intron	DEL	T	TCGA-17-Z014-01A-01W-0746-08	193969	55206242	7819278	868	51483											
CTCFL	140690	broad.mit.edu	37	chr20	56078266	56078266	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcgatggaagagggctccTcggggtgggggccacacatg	18	9	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56078266	A	A	56078266	1	1	47	0	1	0	0	0	0	0	0	0	4035	1566	54	5		5	CTCFL	20	56078266	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	872024	56078266	6947254	869	51484											
TPTE	7179	broad.mit.edu	37	chr21	10941970	10941970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgacatagcaataatacGttctaaaagtcaaaatcatc	4	7	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10941970	T	T	10941970	3	4	47	1	0	0	0	0	1	0	0	0	16554	1145	40	3	966	3	TPTE	21	10941970	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08		10941970	37187925	870	51485											
TPTE	7179	broad.mit.edu	37	chr21	10943071	10943071	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcagaaacaaaattttatCaatataaactatgtctagag	4	6	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10943071	G	G	10943071	1	3	47	0	1	0	0	0	0	0	0	0	16554	841	29	4		4	TPTE	21	10943071	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1101	10943071	37186824	871	51486											
BAGE2	85319	broad.mit.edu	37	chr21	11021148	11021148	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcactgctagaaaacaacaCaaccgtagtgtgcatagagt	9	9	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11021148	A	A	11021148	1	1	47	0	1	0	0	0	0	0	0	0	1297	493	17	3		3	BAGE2	21	11021148	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	78077	11021148	37108747	872	51487											
BAGE2	85319	broad.mit.edu	37	chr21	11048736	11048736	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaacagactgatcatggCagttgggcataattcttgct	9	7	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11048736	T	T	11048736	1	4	47	0	1	0	0	0	0	0	0	0	1297	725	25	4		4	BAGE2	21	11048736	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	27588	11048736	37081159	873	51488											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654973	31654973	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggggagttgcagggcAcagaggagtttgacgggtca	18	6	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31654973	C	C	31654973	3	2	47	1	0	0	0	0	1	0	0	0	8614	159	6	5	490	5	KRTAP24-1	21	31654973	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	20606237	31654973	16474922	874	51489											
KCNJ6	3763	broad.mit.edu	37	chr21	39129836	39129836	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtgtgatgattccagccTggagtgagcactccctcaca	10	12	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39129836	C	C	39129836	1	2	47	0	1	0	0	0	0	0	0	0	8125	1595	55	5		5	KCNJ6	21	39129836	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	7474863	39129836	9000059	875	51490											
C2CD2	25966	broad.mit.edu	37	chr21	43327262	43327262	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatttcaattcaccaggtTccatgtaagagaactgcaga	9	8	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43327262	C	C	43327262	3	2	47	1	0	0	0	0	1	0	0	0	2174	1783	62	5	953	5	C2CD2	21	43327262	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4197426	43327262	4802633	876	51491											
TRPM2	7226	broad.mit.edu	37	chr21	45773846	45773846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacgacgggggtgggaaaGggtctgctgaccttgggggc	21	7	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45773846	T	T	45773846	1	4	47	0	1	0	0	0	0	0	0	0	16711	1015	35	2		2	TRPM2	21	45773846	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2446584	45773846	2356049	877	51492											
C21orf29	54084	broad.mit.edu	37	chr21	46002496	46002496	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctggaccacccatcactgTccaaagtgtctttccacagt	7	14	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46002496	A	A	46002496	1	1	47	0	1	0	0	0	0	0	0	0	2146	1682	58	5		5	C21orf29	21	46002496	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	228650	46002496	2127399	878	51493											
PCBP3	54039	broad.mit.edu	37	chr21	47217801	47217801	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatagagagagtgaatgcAtggatggatgagtgcatgga	15	4	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47217801	C	C	47217801	1	2	47	0	1	0	0	0	0	0	0	0	11596	232	8	5		5	PCBP3	21	47217801	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1215305	47217801	912094	879	51494											
PRMT2	3275	broad.mit.edu	37	chr21	48071791	48071791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcacgtcctcctggcctGctgtctgcctctcccctgca	7	19	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48071791	T	T	48071791	1	4	47	0	1	0	0	0	0	0	0	0	12643	1334	46	3		3	PRMT2	21	48071791	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	853990	48071791	58104	880	51495											
CACNG2	10369	broad.mit.edu	37	chr22	37027594	37027595	+	Intron	DNP	CA	AC	AC													acccacttgggccaaagagaCaggaggaaaggttttctggg							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	37027595	AC	AC	37027594	1	1	47	0	1	0	0	0	0	0	0	0	2583	493	17	3		3	CACNG2	22	37027594	Intron	DNP	CA	TCGA-17-Z014-01A-01W-0746-08		37027594	14276972	881	51496											
PACSIN2	11252	broad.mit.edu	37	chr22	43272936	43272936	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcactgacggtgctgcccGtgtcgtcctcatcctcgaag	10	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43272936	A	A	43272936	3	1	47	1	0	0	0	0	1	0	0	0	11469	1145	40	4	363	4	PACSIN2	22	43272936	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	6245342	43272936	8031630	882	51497											
EFCAB6	64800	broad.mit.edu	37	chr22	43950875	43950875	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggcatggtaatgggaagtCactgctttgtggaggcgagc	16	6	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43950875	T	T	43950875	2	4	47	1	0	0	0	0	0	0	0	1	4979	813	29	4		4	EFCAB6	22	43950875	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	677939	43950875	7353691	883	51498											
CSF2RA	1438	broad.mit.edu	37	chrX	1407648	1407648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttgtttctacctcttcCcaggaagggagggtaccgct	10	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1407648	A	A	1407648	1	1	47	0	1	0	0	0	0	0	0	0	3968	638	22	2		2	CSF2RA	23	1407648	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08		1407648	153862912	884	51499											
DHRSX	207063	broad.mit.edu	37	chrX	2300703	2300703	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaccatcatcaccaccatcAtcaccatcatcatcaccatc	0	19	8	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2300703	T	T	2300703	1	4	47	0	1	0	0	0	0	0	0	0	4539	232	8	5		5	DHRSX	23	2300703	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	893055	2300703	152969857	885	51500											
GPR143	4935	broad.mit.edu	37	chrX	9709396	9709396	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accataataaaccatgtggtCttggctgcagttctgacagg	10	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9709396	T	T	9709396	2	4	47	1	0	0	0	0	0	0	0	1	6716	912	32	4		4	GPR143	23	9709396	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	7408693	9709396	145561164	886	51501											
WWC3	55841	broad.mit.edu	37	chrX	10085245	10085245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggtctctggcctccagCcggggctccctgagctcggt	15	15	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10085245	A	A	10085245	3	1	47	1	0	0	0	0	1	0	0	0	17540	738	26	3	1184	3	WWC3	23	10085245	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	375849	10085245	145185315	887	51502											
ARHGAP6	395	broad.mit.edu	37	chrX	11505144	11505144	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggttatatggagggtgggAggaccacatttctcactgtt	13	6	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11505144	G	G	11505144	1	3	47	0	1	0	0	0	0	0	0	0	889	319	11	5		5	ARHGAP6	23	11505144	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1419899	11505144	143765416	888	51503											
TLR8	51311	broad.mit.edu	37	chrX	12940114	12940114	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggagccagtgttacaGcattctcagtatttgaggct	11	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12940114	A	A	12940114	2	1	47	1	0	0	0	0	0	0	0	1	16080	962	34	4		4	TLR8	23	12940114	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1434970	12940114	142330446	889	51504											
CDKL5	6792	broad.mit.edu	37	chrX	18668393	18668393	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgatctaaagacccgtgtgtCcagacgtggatgctgtactt	11	10	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18668393	T	T	18668393	1	4	47	0	1	0	0	0	0	0	0	0	3187	870	30	4		4	CDKL5	23	18668393	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	5728279	18668393	136602167	890	51505											
PPEF1	5475	broad.mit.edu	37	chrX	18800480	18800480	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttaaatcccatttttttTtaggtatggcttcacgaaag	6	7	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18800480	A	A	18800480	1	1	47	0	1	0	0	0	0	0	0	0	12403	1856	64	5		5	PPEF1	23	18800480	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	132087	18800480	136470080	891	51506											
PDHA1	5160	broad.mit.edu	37	chrX	19372563	19372563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcattaattagtatctccCctcatggatttctgtggttc	9	9	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19372563	A	A	19372563	1	1	47	0	1	0	0	0	0	0	0	0	11758	638	22	2		2	PDHA1	23	19372563	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	572083	19372563	135897997	892	51507											
MAP7D2	256714	broad.mit.edu	37	chrX	20031406	20031406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtttcccttattcttaCgtatttttatgtcaggattc	6	8	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20031406	A	A	20031406	1	1	47	0	1	0	0	0	0	0	0	0	9360	551	19	3		3	MAP7D2	23	20031406	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	658843	20031406	135239154	893	51508											
PTCHD1	139411	broad.mit.edu	37	chrX	23397857	23397857	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgctcgggccaccaaTcggaccaattttgctatcac	8	12	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23397857	C	C	23397857	2	2	47	1	0	0	0	0	0	0	0	1	12838	1432	50	5		5	PTCHD1	23	23397857	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3366451	23397857	131872703	894	51509											
POLA1	5422	broad.mit.edu	37	chrX	24844714	24844714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcctcattgcaacgtgGttgggtaagtgtcccaagct	12	10	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24844714	T	T	24844714	3	4	47	1	0	0	0	0	1	0	0	0	12282	1270	44	3	3840	3	POLA1	23	24844714	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1446857	24844714	130425846	895	51510											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29325241	29325241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcatgctgctgtactgGtgtctgtgctattcaatcta	9	8	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29325241	T	T	29325241	1	4	47	0	1	0	0	0	0	0	0	0	7731	1276	44	3		3	IL1RAPL1	23	29325241	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4480527	29325241	125945319	896	51511											
DMD	1756	broad.mit.edu	37	chrX	31227588	31227588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcctcctgtgacagagccCgggaaataaaaacatgccat	9	11	0	2	rs72466554		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31227588	A	A	31227588	1	1	47	0	1	0	0	0	0	0	0	0	4620	667	23	1		1	DMD	23	31227588	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1902347	31227588	124042972	897	51512											
DMD	1756	broad.mit.edu	37	chrX	31241365	31241365	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctagaaaacatatagtgtGtatacgccaagctttcggag	10	8	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31241365	C	C	31241365	1	2	47	0	1	0	0	0	0	0	0	0	4620	1392	48	4		4	DMD	23	31241365	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	13777	31241365	124029195	898	51513											
DMD	1756	broad.mit.edu	37	chrX	31366614	31366614	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcttttgttttttcaactGttattcttattaatcaagat	3	5	4	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31366614	C	C	31366614	1	2	47	0	1	0	0	0	0	0	0	0	4620	1392	48	4		4	DMD	23	31366614	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	125249	31366614	123903946	899	51514											
DMD	1756	broad.mit.edu	37	chrX	32767053	32767053	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcacctctatgggtaCtaactggactgtttaatgtg	8	10	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32767053	G	G	32767053	1	3	47	0	1	0	0	0	0	0	0	0	4620	580	20	4		4	DMD	23	32767053	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1400439	32767053	122503507	900	51515											
FAM47A	158724	broad.mit.edu	37	chrX	34148327	34148327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatacttcatcttcacaCgctgtgcggtataagaattc	6	12	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34148327	A	A	34148327	3	1	47	1	0	0	0	0	1	0	0	0	5620	536	19	3	310	3	FAM47A	23	34148327	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1381274	34148327	121122233	901	51516											
FAM47A	158724	broad.mit.edu	37	chrX	34150064	34150064	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaacgccttccgtgctagcTgggctggagagagcttggaa	15	10	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34150064	A	A	34150064	3	1	47	1	0	0	0	0	1	0	0	0	5620	1580	55	5	2047	5	FAM47A	23	34150064	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1737	34150064	121120496	902	51517											
FAM47A	158724	broad.mit.edu	37	chrX	34150393	34150393	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcagcctctggtccccCatggtggccctcgctgtggt	12	16	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34150393	T	T	34150393	3	4	47	1	0	0	0	0	1	0	0	0	5620	594	21	4	2376	4	FAM47A	23	34150393	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	329	34150393	121120167	903	51518											
FAM47B	170062	broad.mit.edu	37	chrX	34961280	34961280	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccgagctctcgccagtacAgccagcacggaaggcgttcg	12	14	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961280	T	T	34961280	3	4	47	1	0	0	0	0	1	0	0	0	5621	188	7	5	334	5	FAM47B	23	34961280	Missense_Mutation	SNP	A	TCGA-17-Z014-01A-01W-0746-08	810887	34961280	120309280	904	51519											
LANCL3	347404	broad.mit.edu	37	chrX	37518781	37518781	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatgagcatctcaagccctCagatcgggaattggtatggc	11	11	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37518781	T	T	37518781	3	4	47	1	0	0	0	0	1	0	0	0	8694	838	29	4	774	4	LANCL3	23	37518781	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2557501	37518781	117751779	905	51520											
MAOA	4128	broad.mit.edu	37	chrX	43587335	43587335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacagaaaaactttctgaaCacactaaatcgtgttgtaaa	5	8	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43587335	A	A	43587335	1	1	47	0	1	0	0	0	0	0	0	0	9317	493	17	3		3	MAOA	23	43587335	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	6068554	43587335	111683225	906	51521											
ZNF674	641339	broad.mit.edu	37	chrX	46360580	46360580	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgaacacctttcccaTgaataatatttagggagtct	7	7	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46360580	A	A	46360580	2	1	47	1	0	0	0	0	0	0	0	1	18208	1451	51	5		5	ZNF674	23	46360580	Silent	SNP	T	TCGA-17-Z014-01A-01W-0746-08	2773245	46360580	108909980	907	51522											
ZNF41	7592	broad.mit.edu	37	chrX	47306644	47306644	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaattgcatatacactgtggTgatgcaggaacttgtctttc	10	7	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47306644	C	C	47306644	1	2	47	0	1	0	0	0	0	0	0	0	18016	1711	59	5		5	ZNF41	23	47306644	3'UTR	SNP	T	TCGA-17-Z014-01A-01W-0746-08	946064	47306644	107963916	908	51523											
ARAF	369	broad.mit.edu	37	chrX	47424584	47424584	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggatggggagcacagaggcCcagccacgaggcccttacag	16	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47424584	T	T	47424584	1	4	47	0	1	0	0	0	0	0	0	0	839	638	22	4		4	ARAF	23	47424584	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	117940	47424584	107845976	909	51524											
TIMP1	7076	broad.mit.edu	37	chrX	47444636	47444636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagccttaggggatgcCgctgacatccggttcgtcta	11	12	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47444636	A	A	47444636	2	1	47	1	0	0	0	0	0	0	0	1	16040	639	23	1		1	TIMP1	23	47444636	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	20052	47444636	107825924	910	51525											
SYN1	6853	broad.mit.edu	37	chrX	47464643	47464643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagggcttgtcacagaaGttgtagacagaatgcaagga	12	8	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47464643	T	T	47464643	3	4	47	1	0	0	0	0	1	0	0	0	15559	1020	36	3	1494	3	SYN1	23	47464643	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	20007	47464643	107805917	911	51526											
UXT	8409	broad.mit.edu	37	chrX	47516658	47516658	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggaaaaaaccatatcCcagggccacatagatgcgtg	9	12	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47516658	A	A	47516658	4	1	47	1	0	0	0	0	0	1	0	0	17237	632	22	2	205	2	UXT	23	47516658	Nonsense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	52015	47516658	107753902	912	51527											
SSX5	6758	broad.mit.edu	37	chrX	48053578	48053578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcaccctgattcccacgGttagggtcattatcaaaatc	6	12	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48053578	T	T	48053578	3	4	47	1	0	0	0	0	1	0	0	0	15326	1252	44	3	315	3	SSX5	23	48053578	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	536920	48053578	107216982	913	51528											
SSX1	6756	broad.mit.edu	37	chrX	48116852	48116852	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggacaaggagcagggtctCgggggagatctggacccttg	19	8	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48116852	A	A	48116852	1	1	47	0	1	0	0	0	0	0	0	0	15321	899	31	3		3	SSX1	23	48116852	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	63274	48116852	107153708	914	51529											
CCDC22	28952	broad.mit.edu	37	chrX	49093592	49093592	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaccttgcgcgccttcacCactgagctggttgtagaggc	12	13	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49093592	T	T	49093592	2	4	47	1	0	0	0	0	0	0	0	1	2824	581	21	4		4	CCDC22	23	49093592	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	976740	49093592	106176968	915	51530											
TSPYL2	64061	broad.mit.edu	37	chrX	53114877	53114877	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgactattatgcagtggaaGacattttcagcgagatctca	9	8	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53114877	A	A	53114877	3	1	47	1	0	0	0	0	1	0	0	0	16785	942	33	4	1325	4	TSPYL2	23	53114877	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	4021285	53114877	102155683	916	51531											
KDM5C	8242	broad.mit.edu	37	chrX	53223962	53223962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtgggtcagcagcctaCcccttcccttctctgggccc	9	17	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53223962	A	A	53223962	1	1	47	0	1	0	0	0	0	0	0	0	8205	522	18	3		3	KDM5C	23	53223962	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	109085	53223962	102046598	917	51532											
WNK3	65267	broad.mit.edu	37	chrX	54337551	54337551	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcactatcagggtcaacttaCgtctttaaggtcccagatgt	9	10	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54337551	T	T	54337551	5	4	47	1	0	0	0	0	0	0	1	0	17506	550	19	4	4779	4	WNK3	23	54337551	Splice_Site	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1113589	54337551	100933009	918	51533											
ITIH5L	347365	broad.mit.edu	37	chrX	54777633	54777633	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcttcagcagggcaggtTggtcccaggacaggcgcaag	15	12	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54777633	A	A	54777633	3	1	47	1	0	0	0	0	1	0	0	0	7978	1812	63	5	416	5	ITIH5L	23	54777633	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	440082	54777633	100492927	919	51534											
ITIH5L	347365	broad.mit.edu	37	chrX	54779998	54779998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcattgctatgtgtctGgggtattaacccacaaatgt	11	7	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54779998	T	T	54779998	1	4	47	0	1	0	0	0	0	0	0	0	7978	1363	47	2		2	ITIH5L	23	54779998	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2365	54779998	100490562	920	51535											
ITIH5L	347365	broad.mit.edu	37	chrX	54817226	54817226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgataaggttttcattcaGtgaaggccagtctgatgggt	12	6	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54817226	T	T	54817226	1	4	47	0	1	0	0	0	0	0	0	0	7978	1044	36	3		3	ITIH5L	23	54817226	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	37228	54817226	100453334	921	51536											
ALAS2	212	broad.mit.edu	37	chrX	55050158	55050158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaatgccttccctattccGgtcccctttttttccacctc	4	17	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55050158	A	A	55050158	1	1	47	0	1	0	0	0	0	0	0	0	485	1131	39	4		4	ALAS2	23	55050158	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	232932	55050158	100220402	922	51537											
FAM123B	139285	broad.mit.edu	37	chrX	63413218	63413218	+	5'UTR	DEL	C	-	-													ggaaatgcagcctcaggcttCcaggcactgttataacatta							TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63413218	-	-	63413218	6	5	47	0	1	1	0	1	0	0	0	0	5469	870	30	0		0	FAM123B	23	63413218	5'UTR	DEL	C	TCGA-17-Z014-01A-01W-0746-08	8363060	63413218	91857342	923	51538											
TEX11	56159	broad.mit.edu	37	chrX	69960564	69960564	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccataccttgtttgctaggTttacagcattgagagcctta	8	10	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69960564	G	G	69960564	3	3	47	1	0	0	0	0	1	0	0	0	15896	1725	60	5	2027	5	TEX11	23	69960564	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	6547346	69960564	85309996	924	51539											
SLC7A3	84889	broad.mit.edu	37	chrX	70148591	70148591	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttccccaccattatcacctCccttaagcctttctcaggcc	3	19	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70148591	A	A	70148591	1	1	47	0	1	0	0	0	0	0	0	0	14812	870	30	3		3	SLC7A3	23	70148591	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	188027	70148591	85121969	925	51540											
MED12	9968	broad.mit.edu	37	chrX	70347238	70347238	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtccgatggctcctctgcaGagcgctgtatccttgcttat	11	12	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70347238	C	C	70347238	3	2	47	1	0	0	0	0	1	0	0	0	9521	943	33	4	2984	4	MED12	23	70347238	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	198647	70347238	84923322	926	51541											
MED12	9968	broad.mit.edu	37	chrX	70348171	70348171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacatcgcaatcctgtgtGcagagctgaccggctattgc	11	11	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70348171	T	T	70348171	3	4	47	1	0	0	0	0	1	0	0	0	9521	1319	46	3	3325	3	MED12	23	70348171	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	933	70348171	84922389	927	51542											
FLJ44635	392490	broad.mit.edu	37	chrX	71364337	71364337	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcatataaaattcattacagGaagtaattaactgaaggaac	7	5	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71364337	C	C	71364337	1	2	47	0	1	0	0	0	0	0	0	0	5989	1189	41	4		4	FLJ44635	23	71364337	5'UTR	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1016166	71364337	83906223	928	51543											
PHKA1	5255	broad.mit.edu	37	chrX	71840577	71840577	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcacggcattactcactcTgtacatgcagttccttggcc	8	13	3	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71840577	A	A	71840577	3	1	47	1	0	0	0	0	1	0	0	0	11938	1580	55	5	1592	5	PHKA1	23	71840577	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	476240	71840577	83429983	929	51544											
ATP7A	538	broad.mit.edu	37	chrX	77298686	77298686	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtctaagttttagcattatCtgagatttgtaattaattca	6	4	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77298686	A	A	77298686	1	1	47	0	1	0	0	0	0	0	0	0	1194	928	32	3		3	ATP7A	23	77298686	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	5458109	77298686	77971874	930	51545											
ITM2A	9452	broad.mit.edu	37	chrX	78616706	78616706	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcaaaaaaagtggctttTgaaatttttgtggaaatgaa	10	2	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78616706	A	A	78616706	1	1	47	0	1	0	0	0	0	0	0	0	7982	1827	63	5		5	ITM2A	23	78616706	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1318020	78616706	76653854	931	51546											
BRWD3	254065	broad.mit.edu	37	chrX	79932142	79932142	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatgagatggctaaccctgGctttttctgtcattttacgc	8	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79932142	C	C	79932142	3	2	47	1	0	0	0	0	1	0	0	0	1535	1203	42	4	37	4	BRWD3	23	79932142	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1315436	79932142	75338418	932	51547											
KLHL4	56062	broad.mit.edu	37	chrX	86877378	86877378	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaataggcaaggagaactGgggatgctgctttcttacat	12	7	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86877378	T	T	86877378	2	4	47	1	0	0	0	0	0	0	0	1	8462	1335	47	2		2	KLHL4	23	86877378	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	6945236	86877378	68393182	933	51548											
CPXCR1	53336	broad.mit.edu	37	chrX	88008697	88008697	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcttcttctacttcagacCcccattcccagaaaattggt	6	13	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88008697	A	A	88008697	2	1	47	1	0	0	0	0	0	0	0	1	3868	610	22	2		2	CPXCR1	23	88008697	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	1131319	88008697	67261863	934	51549											
PABPC5	140886	broad.mit.edu	37	chrX	90691483	90691483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtcggcccccaggggtgCctatctatattaagaacttg	10	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90691483	A	A	90691483	3	1	47	1	0	0	0	0	1	0	0	0	11461	739	26	3	909	3	PABPC5	23	90691483	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2682786	90691483	64579077	935	51550											
SYTL4	94121	broad.mit.edu	37	chrX	99941662	99941662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttctcctacccttgagGtctagatacttaccctcagc	6	14	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99941662	T	T	99941662	1	4	47	0	1	0	0	0	0	0	0	0	15604	1276	44	3		3	SYTL4	23	99941662	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	9250179	99941662	55328898	936	51551											
TIMM8A	1678	broad.mit.edu	37	chrX	100603498	100603498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtaggtacagtgttcaGgtcccagccccaggctcctc	11	13	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100603498	T	T	100603498	1	4	47	0	1	0	0	0	0	0	0	0	16037	1015	35	2		2	TIMM8A	23	100603498	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	661836	100603498	54667062	937	51552											
WBP5	51186	broad.mit.edu	37	chrX	102612685	102612685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgaggaagagccaaagCctgaggaaaagccagaagag	14	7	0	5			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102612685	A	A	102612685	3	1	47	1	0	0	0	0	1	0	0	0	17389	739	26	3	75	3	WBP5	23	102612685	Missense_Mutation	SNP	C	TCGA-17-Z014-01A-01W-0746-08	2009187	102612685	52657875	938	51553											
MID2	11043	broad.mit.edu	37	chrX	107084310	107084310	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctagcgagcgaattgctTgccaattctgtgagcaggac	12	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107084310	G	G	107084310	3	3	47	1	0	0	0	0	1	0	0	0	9671	1812	63	5	421	5	MID2	23	107084310	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4471625	107084310	48186250	939	51554											
VSIG1	340547	broad.mit.edu	37	chrX	107319548	107319548	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccttttagtataagatatCagaggtatctttctgtttac	6	7	3	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107319548	T	T	107319548	1	4	47	0	1	0	0	0	0	0	0	0	17349	841	29	4		4	VSIG1	23	107319548	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	235238	107319548	47951012	940	51555											
COL4A6	1288	broad.mit.edu	37	chrX	107478345	107478345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggaagcaaagcaggtgGtggggttttccaggtctggg	19	5	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107478345	T	T	107478345	1	4	47	0	1	0	0	0	0	0	0	0	3727	1276	44	3		3	COL4A6	23	107478345	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	158797	107478345	47792215	941	51556											
GUCY2F	2986	broad.mit.edu	37	chrX	108695482	108695482	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attccattttttctcagcacAgtctgtcttgttgactttat	5	9	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108695482	T	T	108695482	1	4	47	0	1	0	0	0	0	0	0	0	6963	203	7	5		5	GUCY2F	23	108695482	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	1217137	108695482	46575078	942	51557											
RGAG1	57529	broad.mit.edu	37	chrX	109698546	109698546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggcccataccaacaaGtaaaactccatggaatcttc	6	12	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109698546	T	T	109698546	3	4	47	1	0	0	0	0	1	0	0	0	13382	1020	36	3	4170	3	RGAG1	23	109698546	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1003064	109698546	45572014	943	51558											
PAK3	5063	broad.mit.edu	37	chrX	110274150	110274150	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacattacaagtcggtttgtAgtcagctgtactagtaactg	9	7	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110274150	G	G	110274150	1	3	47	0	1	0	0	0	0	0	0	0	11496	435	15	5		5	PAK3	23	110274150	Intron	SNP	A	TCGA-17-Z014-01A-01W-0746-08	575604	110274150	44996410	944	51559											
PAK3	5063	broad.mit.edu	37	chrX	110385189	110385189	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaaataattggaatttctgGagttaagtgttgttaaaatt	9	2	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110385189	T	T	110385189	1	4	47	0	1	0	0	0	0	0	0	0	11496	1189	41	3		3	PAK3	23	110385189	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	111039	110385189	44885371	945	51560											
PAK3	5063	broad.mit.edu	37	chrX	110439559	110439559	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaaaggtatgagctagGcagttgtggaaactcagtgt	12	5	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110439559	A	A	110439559	1	1	47	0	1	0	0	0	0	0	0	0	11496	1218	42	4		4	PAK3	23	110439559	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	54370	110439559	44831001	946	51561											
CAPN6	827	broad.mit.edu	37	chrX	110495141	110495141	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtagaggaaaataaataaaGaatgtaatataacaactcaa	6	3	1	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110495141	T	T	110495141	1	4	47	0	1	0	0	0	0	0	0	0	2656	957	33	3		3	CAPN6	23	110495141	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	55582	110495141	44775419	947	51562											
DOCK11	139818	broad.mit.edu	37	chrX	117749590	117749590	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaatacaagtttgaatttCtgcaaacaatttgcaatcac	5	8	2	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117749590	T	T	117749590	2	4	47	1	0	0	0	0	0	0	0	1	4726	912	32	4		4	DOCK11	23	117749590	Silent	SNP	C	TCGA-17-Z014-01A-01W-0746-08	7254449	117749590	37520970	948	51563											
DOCK11	139818	broad.mit.edu	37	chrX	117762120	117762120	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggcttgacttttttttttCcccagcttatgggtcttttc	8	9	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117762120	T	T	117762120	1	4	47	0	1	0	0	0	0	0	0	0	4726	870	30	4		4	DOCK11	23	117762120	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	12530	117762120	37508440	949	51564											
FAM70A	55026	broad.mit.edu	37	chrX	119419885	119419885	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtccttcatccaaatgctTactgcctttcagataagctg	8	11	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119419885	A	A	119419885	1	1	47	0	1	0	0	0	0	0	0	0	5656	1769	61	5		5	FAM70A	23	119419885	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	1657765	119419885	35850675	950	51565											
ODZ1	10178	broad.mit.edu	37	chrX	124097239	124097239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacctcagctgggctgacaTatgcaatagattctctgagc	9	11	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124097239	C	C	124097239	1	2	47	0	1	0	0	0	0	0	0	0	10929	1421	49	5		5	ODZ1	23	124097239	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	4677354	124097239	31173321	951	51566											
OCRL	4952	broad.mit.edu	37	chrX	128725064	128725064	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttattattcaaattttacAcaaggactaatcctgggtgt	7	6	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128725064	T	T	128725064	1	4	47	0	1	0	0	0	0	0	0	0	10918	174	6	5		5	OCRL	23	128725064	3'UTR	SNP	A	TCGA-17-Z014-01A-01W-0746-08	4627825	128725064	26545496	952	51567											
ELF4	2000	broad.mit.edu	37	chrX	129208201	129208201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctataatcagggccagcCcgaagaaaggatggtggtaa	13	8	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129208201	A	A	129208201	1	1	47	0	1	0	0	0	0	0	0	0	5098	638	22	2		2	ELF4	23	129208201	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	483137	129208201	26062359	953	51568											
AIFM1	9131	broad.mit.edu	37	chrX	129274513	129274513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaaatgctcacctgttGcaatcaagcacttttcatag	6	11	3	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129274513	T	T	129274513	3	4	47	1	0	0	0	0	1	0	0	0	426	1319	46	3	1117	3	AIFM1	23	129274513	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	66312	129274513	25996047	954	51569											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217320	130217320	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcccaggggacactctcctCagctcccaaaccccacagtg	8	18	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130217320	A	A	130217320	1	1	47	0	1	0	0	0	0	0	0	0	885	841	29	3		3	ARHGAP36	23	130217320	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	942807	130217320	25053240	955	51570											
PHF6	84295	broad.mit.edu	37	chrX	133548050	133548050	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgttgtttgtttttcttTgtttcccctgtgatctaaag	7	6	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133548050	C	C	133548050	1	2	47	0	1	0	0	0	0	0	0	0	11933	1827	63	5		5	PHF6	23	133548050	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3330730	133548050	21722510	956	51571											
SAGE1	55511	broad.mit.edu	37	chrX	134988937	134988937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgtattgtctttcctgGcctcaatttcaggggtctcg	10	9	4	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134988937	T	T	134988937	1	4	47	0	1	0	0	0	0	0	0	0	13920	1218	42	3		3	SAGE1	23	134988937	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	1440887	134988937	20281623	957	51572											
F9	2158	broad.mit.edu	37	chrX	138613048	138613048	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatacattgagtatgcttGccttttagatatagaaatat	6	4	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138613048	A	A	138613048	1	1	47	0	1	0	0	0	0	0	0	0	5397	1334	46	4		4	F9	23	138613048	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3624111	138613048	16657512	958	51573											
MCF2	4168	broad.mit.edu	37	chrX	138678654	138678654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaaaaatgtacaaactGggagacacacacacacgaaa	6	9	0	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138678654	T	T	138678654	1	4	47	0	1	0	0	0	0	0	0	0	9471	1363	47	2		2	MCF2	23	138678654	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	65606	138678654	16591906	959	51574											
CXorf66	347487	broad.mit.edu	37	chrX	139038644	139038644	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttttttgagcatgatgacTtggatgacctttttggatat	9	4	0	4			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139038644	A	A	139038644	3	1	47	1	0	0	0	0	1	0	0	0	4151	1609	56	5	592	5	CXorf66	23	139038644	Missense_Mutation	SNP	T	TCGA-17-Z014-01A-01W-0746-08	359990	139038644	16231916	960	51575											
MAGEC2	51438	broad.mit.edu	37	chrX	141290725	141290725	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacagtggcatcatctgcgGtatcaattgtggcctggact	12	9	3	1	rs150181121		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141290725	C	C	141290725	3	2	47	1	0	0	0	0	1	0	0	0	9273	1261	44	4	76	4	MAGEC2	23	141290725	Missense_Mutation	SNP	G	TCGA-17-Z014-01A-01W-0746-08	2252081	141290725	13979835	961	51576											
SPANXN1	494118	broad.mit.edu	37	chrX	144337692	144337692	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcagaaattacagaaattCtccaaggaaggagccagata	8	7	2	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144337692	A	A	144337692	1	1	47	0	1	0	0	0	0	0	0	0	15106	928	32	3		3	SPANXN1	23	144337692	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	3046967	144337692	10932868	962	51577											
AFF2	2334	broad.mit.edu	37	chrX	147967182	147967182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctctggagatgctgaaaTagtattttccccttgattta	7	8	1	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147967182	C	C	147967182	1	2	47	0	1	0	0	0	0	0	0	0	357	1421	49	5		5	AFF2	23	147967182	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	3629490	147967182	7303378	963	51578											
HSFX2	100130086	broad.mit.edu	37	chrX	148842495	148842495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaaagagccccgtatgGtccacaactacagtggtccc	9	13	0	2			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148842495	T	T	148842495	1	4	47	0	1	0	0	0	0	0	0	0	7468	1276	44	3		3	HSFX2	23	148842495	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	875313	148842495	6428065	964	51579											
ZNF275	10838	broad.mit.edu	37	chrX	152610221	152610221	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggcactggaatattatggGaacgtgacctctgtgggtaa	14	6	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152610221	A	A	152610221	1	1	47	0	1	0	0	0	0	0	0	0	17936	1189	41	4		4	ZNF275	23	152610221	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	3767726	152610221	2660339	965	51580											
ABCD1	215	broad.mit.edu	37	chrX	153005521	153005521	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggcctgcgctctctgGcgtcagcggctgttgcccct	15	14	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153005521	C	C	153005521	1	2	47	0	1	0	0	0	0	0	0	0	60	1218	42	4		4	ABCD1	23	153005521	Intron	SNP	G	TCGA-17-Z014-01A-01W-0746-08	395300	153005521	2265039	966	51581											
TKTL1	8277	broad.mit.edu	37	chrX	153524338	153524338	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcagggccacatgctccacGagctccgggtaagttctcct	10	14	2	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153524338	T	T	153524338	2	4	47	1	0	0	0	0	0	0	0	1	16058	1045	37	3		3	TKTL1	23	153524338	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	518817	153524338	1746222	967	51582											
TKTL1	8277	broad.mit.edu	37	chrX	153551620	153551620	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgaaccattcccaagtgcacGatcttctacccaactgatgc	6	15	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153551620	A	A	153551620	2	1	47	1	0	0	0	0	0	0	0	1	16058	1045	37	4		4	TKTL1	23	153551620	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	27282	153551620	1718940	968	51583											
LAGE3	8270	broad.mit.edu	37	chrX	153706443	153706443	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattggaggtggcaactccTggtccctcgctctgcccctc	10	15	1	0			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153706443	A	A	153706443	1	1	47	0	1	0	0	0	0	0	0	0	8673	1595	55	5		5	LAGE3	23	153706443	Intron	SNP	T	TCGA-17-Z014-01A-01W-0746-08	154823	153706443	1564117	969	51584											
BRCC3	79184	broad.mit.edu	37	chrX	154334008	154334008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgagacggagtctcgccCagttgtccaggctggagtgc	14	10	1	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154334008	A	A	154334008	1	1	47	0	1	0	0	0	0	0	0	0	1509	609	21	2		2	BRCC3	23	154334008	Intron	SNP	C	TCGA-17-Z014-01A-01W-0746-08	627565	154334008	936552	970	51585											
VBP1	7411	broad.mit.edu	37	chrX	154448519	154448519	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgcagatacagtattaaaGaagctggatgaacagtacca	9	7	0	3			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154448519	A	A	154448519	2	1	47	1	0	0	0	0	0	0	0	1	17263	933	33	4		4	VBP1	23	154448519	Silent	SNP	G	TCGA-17-Z014-01A-01W-0746-08	114511	154448519	822041	971	51586											
SPRY3	10251	broad.mit.edu	37	chrX	155004532	155004532	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttttgttcctgcagtgtCaggggaatgaccaagtacat	10	9	2	1			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155004532	A	A	155004532	1	1	47	0	1	0	0	0	0	0	0	0	15225	841	29	3		3	SPRY3	23	155004532	3'UTR	SNP	C	TCGA-17-Z014-01A-01W-0746-08	556013	155004532	266028	972	51587											
NOL9	79707	broad.mit.edu	37	chr1	6586685	6586685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattcccatgacccctgacCctacttcagctcctcacttc	3	20	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6586685	A	A	6586685	1	1	48	0	1	0	0	0	0	0	0	0	10623	638	22	2		2	NOL9	1	6586685	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08		6586685	242663936	1	51588											
CAMTA1	23261	broad.mit.edu	37	chr1	7540373	7540374	+	Intron	DEL	AA	-	-													gtgtgtatgagtgcatttgtAagtgtgtgtgtgtatgagtg					rs12753184	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7540374	-	-	7540373	6	5	48	0	1	1	0	1	0	0	0	0	2639	377	13	0		0	CAMTA1	1	7540373	Intron	DEL	AA	TCGA-17-Z015-01A-01W-0746-08	953688	7540373	241710248	2	51589											
CLSTN1	22883	broad.mit.edu	37	chr1	9811657	9811657	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgtcgtactgcttcccctCgatgaccgtggctttgtagg	12	12	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9811657	T	T	9811657	3	4	48	1	0	0	0	0	1	0	0	0	3593	893	31	4	2482	4	CLSTN1	1	9811657	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2271284	9811657	239438964	3	51590											
EXOSC10	5394	broad.mit.edu	37	chr1	11159895	11159895	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtggcgccattttttcAgcctgcacggctcgtctcgc	12	14	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11159895	C	C	11159895	1	2	48	0	1	0	0	0	0	0	0	0	5356	203	7	5		5	EXOSC10	1	11159895	5'UTR	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1348238	11159895	238090726	4	51591											
MTOR	2475	broad.mit.edu	37	chr1	11174961	11174961	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacctacagaataataaatGggaaaagccaaatcaatgtt	6	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11174961	A	A	11174961	1	1	48	0	1	0	0	0	0	0	0	0	10048	1363	47	4		4	MTOR	1	11174961	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	15066	11174961	238075660	5	51592											
PRAMEF1	65121	broad.mit.edu	37	chr1	12855647	12855647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctacctattggaagaagaCatgaagtgtctctcccagta	10	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12855647	A	A	12855647	3	1	48	1	0	0	0	0	1	0	0	0	12526	477	17	3	937	3	PRAMEF1	1	12855647	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1680686	12855647	236394974	6	51593											
PRAMEF2	65122	broad.mit.edu	37	chr1	12918837	12918837	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctccctggatttgtcttcTagagatttttcttgcagatc	7	9	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12918837	C	C	12918837	1	2	48	0	1	0	0	0	0	0	0	0	12537	1537	53	5		5	PRAMEF2	1	12918837	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	63190	12918837	236331784	7	51594											
PRAMEF4	400735	broad.mit.edu	37	chr1	12939641	12939641	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcagatgggatttccacaGaagctgaaggtgttgagctc	13	7	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12939641	T	T	12939641	3	4	48	1	0	0	0	0	1	0	0	0	12541	933	33	3	279	3	PRAMEF4	1	12939641	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	20804	12939641	236310980	8	51595											
PRDM2	7799	broad.mit.edu	37	chr1	14073347	14073347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccatgagccactatgccCgctaataattttgaaggctg	9	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14073347	A	A	14073347	1	1	48	0	1	0	0	0	0	0	0	0	12564	667	23	1		1	PRDM2	1	14073347	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1133706	14073347	235177274	9	51596											
NBPF1	55672	broad.mit.edu	37	chr1	16901321	16901321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatggaggttccctttaagGgggaacatgcaatcctgttc	11	8	0	0	rs10752421		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16901321	A	A	16901321	1	1	48	0	1	0	0	0	0	0	0	0	10286	1247	43	4		4	NBPF1	1	16901321	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2827974	16901321	232349300	10	51597											
UBR4	23352	broad.mit.edu	37	chr1	19443693	19443693	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttacaacctgctgcccctcCcgaggcctaaaaagcccgta	7	17	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19443693	T	T	19443693	1	4	48	0	1	0	0	0	0	0	0	0	17030	638	22	4		4	UBR4	1	19443693	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2542372	19443693	229806928	11	51598											
COL16A1	1307	broad.mit.edu	37	chr1	32164183	32164183	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaccagggcaaactcctcCgggagaccccgagggaatac	12	14	0	1	rs76478494	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32164183	T	T	32164183	2	4	48	1	0	0	0	0	0	0	0	1	3705	639	23	4		4	COL16A1	1	32164183	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	12720490	32164183	217086438	12	51599											
BAI2	576	broad.mit.edu	37	chr1	32222001	32222001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaggaaggtaaaggggCctgagccgctgcacagctcc	15	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32222001	A	A	32222001	3	1	48	1	0	0	0	0	1	0	0	0	1304	739	26	3	4440	3	BAI2	1	32222001	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	57818	32222001	217028620	13	51600											
CSMD2	114784	broad.mit.edu	37	chr1	34261934	34261934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgaatggagggaccagCtggagctgtggcagaggagc	17	8	0	2	rs150238846	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34261934	A	A	34261934	1	1	48	0	1	0	0	0	0	0	0	0	3979	812	28	3		3	CSMD2	1	34261934	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2039933	34261934	214988687	14	51601											
CSMD2	114784	broad.mit.edu	37	chr1	34403490	34403490	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcaaatgttctcattccAttgggccacagggccatgag	11	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34403490	T	T	34403490	1	4	48	0	1	0	0	0	0	0	0	0	3979	232	8	5		5	CSMD2	1	34403490	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	141556	34403490	214847131	15	51602											
CSMD2	114784	broad.mit.edu	37	chr1	34617228	34617228	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagagaagggagaggaaagGagagaggcggaaggaacaaa	19	3	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34617228	A	A	34617228	1	1	48	0	1	0	0	0	0	0	0	0	3979	1189	41	4		4	CSMD2	1	34617228	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	213738	34617228	214633393	16	51603											
CSF3R	1441	broad.mit.edu	37	chr1	36932411	36932411	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtggcgtgccaaggccGggcagctggaaggcatcctg	18	10	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36932411	T	T	36932411	2	4	48	1	0	0	0	0	0	0	0	1	3971	1116	39	1		1	CSF3R	1	36932411	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2315183	36932411	212318210	17	51604											
MEAF6	64769	broad.mit.edu	37	chr1	37962294	37962294	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacagcacaaatactaattCaaatcaaacttactcaaagt	2	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37962294	A	A	37962294	1	1	48	0	1	0	0	0	0	0	0	0	9514	841	29	3		3	MEAF6	1	37962294	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1029883	37962294	211288327	18	51605											
EPHA10	284656	broad.mit.edu	37	chr1	38227328	38227328	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacgcgcaccgagacaagcGccacgcatgcgcccacgtcc	11	18	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38227328	A	A	38227328	3	1	48	1	0	0	0	0	1	0	0	0	5208	1087	38	4	2525	4	EPHA10	1	38227328	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	265034	38227328	211023293	19	51606											
COL9A2	1298	broad.mit.edu	37	chr1	40773211	40773211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatacaaattaaagctcCagccagagggccatggcttc	9	10	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40773211	A	A	40773211	1	1	48	0	1	0	0	0	0	0	0	0	3740	609	21	2		2	COL9A2	1	40773211	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2545883	40773211	208477410	20	51607											
NFYC	4802	broad.mit.edu	37	chr1	41204676	41204676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagagtataaagagctctGggaaattaaccaaaactcag	8	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41204676	T	T	41204676	1	4	48	0	1	0	0	0	0	0	0	0	10486	1363	47	2		2	NFYC	1	41204676	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	431465	41204676	208045945	21	51608											
SCMH1	22955	broad.mit.edu	37	chr1	41578782	41578782	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttgacacttaatactTaactgtttctaattgctccc	3	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41578782	A	A	41578782	1	1	48	0	1	0	0	0	0	0	0	0	14021	1769	61	5		5	SCMH1	1	41578782	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	374106	41578782	207671839	22	51609											
GUCA2B	2981	broad.mit.edu	37	chr1	42620549	42620549	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaccctgagtaagtgccccCgctccctgcagaacctcgct	9	17	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42620549	G	G	42620549	1	3	48	0	1	0	0	0	0	0	0	0	6957	667	23	4		4	GUCA2B	1	42620549	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1041767	42620549	206630072	23	51610											
GUCA2B	2981	broad.mit.edu	37	chr1	42620590	42620590	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctcctcccacgcccagGctcctccacctgggttgttt	8	18	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42620590	C	C	42620590	1	2	48	0	1	0	0	0	0	0	0	0	6957	1218	42	4		4	GUCA2B	1	42620590	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	41	42620590	206630031	24	51611											
TIE1	7075	broad.mit.edu	37	chr1	43774977	43774978	+	Intron	DNP	CA	AT	AT													ccactgggcctctgtcctgcCatcagtccagacggacacct							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43774978	AT	AT	43774977	1	1	48	0	1	0	0	0	0	0	0	0	16016	609	21	2		2	TIE1	1	43774977	Intron	DNP	CA	TCGA-17-Z015-01A-01W-0746-08	1154387	43774977	205475644	25	51612											
RAD54L	8438	broad.mit.edu	37	chr1	46740392	46740392	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctaccgcctgctgtctgtAaggatggtgatagtagtcat	11	8	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46740392	G	G	46740392	1	3	48	0	1	0	0	0	0	0	0	0	13101	377	13	5		5	RAD54L	1	46740392	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2965415	46740392	202510229	26	51613											
KIAA0494	9813	broad.mit.edu	37	chr1	47162396	47162396	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttaccttcacaaactctaCggttggtgatgtcaagatag	9	9	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47162396	T	T	47162396	1	4	48	0	1	0	0	0	0	0	0	0	8249	551	19	4		4	KIAA0494	1	47162396	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	422004	47162396	202088225	27	51614											
CYP4A11	1579	broad.mit.edu	37	chr1	47395734	47395734	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacaggatatgggcagaCaggaaggggacagaagcggg	18	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47395734	G	G	47395734	1	3	48	0	1	0	0	0	0	0	0	0	4216	493	17	4		4	CYP4A11	1	47395734	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	233338	47395734	201854887	28	51615											
AGBL4	84871	broad.mit.edu	37	chr1	49309821	49309821	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacccacctgctccagCctcctgggccctagctctgc	9	20	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49309821	G	G	49309821	1	3	48	0	1	0	0	0	0	0	0	0	377	754	26	4		4	AGBL4	1	49309821	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1914087	49309821	199940800	29	51616											
CC2D1B	200014	broad.mit.edu	37	chr1	52827271	52827271	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccgccaacttctcgatgtGggccatgggcaggggggctg	17	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52827271	C	C	52827271	3	2	48	1	0	0	0	0	1	0	0	0	2753	1348	47	4	2428	4	CC2D1B	1	52827271	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3517450	52827271	196423350	30	51617											
C1orf175	374977	broad.mit.edu	37	chr1	55174633	55174633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtctaagggtgggttgGggtggggtcgacgtcggaag	21	5	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55174633	T	T	55174633	1	4	48	0	1	0	0	0	0	0	0	0	2036	1247	43	2		2	C1orf175	1	55174633	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2347362	55174633	194075988	31	51618											
DHCR24	1718	broad.mit.edu	37	chr1	55319744	55319744	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggtgtgcagggcctgcTgcaggcacttcatgggcacc	16	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55319744	G	G	55319744	3	3	48	1	0	0	0	0	1	0	0	0	4516	1580	55	5	378	5	DHCR24	1	55319744	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	145111	55319744	193930877	32	51619											
PPAP2B	8613	broad.mit.edu	37	chr1	57004108	57004108	+	Intron	DEL	C	-	-													tcagctggaactgccatcttCcagtaattcaccaaaatgac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57004108	-	-	57004108	6	5	48	0	1	1	0	1	0	0	0	0	12387	870	30	0		0	PPAP2B	1	57004108	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	1684364	57004108	192246513	33	51620											
C1orf168	199920	broad.mit.edu	37	chr1	57202688	57202688	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctgaaaagatggttctgtGatcataattaagaaagcatc	8	5	3	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57202688	A	A	57202688	1	1	48	0	1	0	0	0	0	0	0	0	2032	1305	45	4		4	C1orf168	1	57202688	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	198580	57202688	192047933	34	51621											
CACHD1	57685	broad.mit.edu	37	chr1	65117772	65117772	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagccttcatgattcaccGgagcacagttccagtctttg	9	11	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65117772	A	A	65117772	1	1	48	0	1	0	0	0	0	0	0	0	2563	1131	39	4		4	CACHD1	1	65117772	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	7915084	65117772	184132849	35	51622											
JAK1	3716	broad.mit.edu	37	chr1	65303784	65303784	+	Frame_Shift_Del	DEL	T	-	-													ccgagaacccaaatagtccaTcccctgagagagagaagtaa							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65303784	-	-	65303784	7	5	48	1	0	1	0	1	0	0	0	0	8007	1435	50	0	509	0	JAK1	1	65303784	Frame_Shift_Del	DEL	T	TCGA-17-Z015-01A-01W-0746-08	186012	65303784	183946837	36	51623											
LEPROT	54741	broad.mit.edu	37	chr1	65895708	65895708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgcctttggatttcctGttattcttgctcgtgtggct	9	9	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65895708	T	T	65895708	3	4	48	1	0	0	0	0	1	0	0	0	8804	1377	48	3	266	3	LEPROT	1	65895708	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	591924	65895708	183354913	37	51624											
PDE4B	5142	broad.mit.edu	37	chr1	66833805	66833805	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaactaagctgaacaaCaattagaaaaagaaaacaaa	4	7	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66833805	A	A	66833805	1	1	48	0	1	0	0	0	0	0	0	0	11734	493	17	3		3	PDE4B	1	66833805	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	938097	66833805	182416816	38	51625											
SGIP1	84251	broad.mit.edu	37	chr1	67136545	67136545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatttcctacttaaatgCggttctgagaaaaagttcat	6	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67136545	A	A	67136545	1	1	48	0	1	0	0	0	0	0	0	0	14319	783	27	3		3	SGIP1	1	67136545	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	302740	67136545	182114076	39	51626											
C1orf141	400757	broad.mit.edu	37	chr1	67558976	67558976	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccaagatctgttttctagTgtctgcttattagttttctt	6	7	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67558976	A	A	67558976	2	1	48	1	0	0	0	0	0	0	0	1	2021	1683	59	5		5	C1orf141	1	67558976	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	422431	67558976	181691645	40	51627											
PTGER3	5733	broad.mit.edu	37	chr1	71331711	71331711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccccttccatgtaaaaGcctgtttccctttgctgcca	6	16	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71331711	T	T	71331711	1	4	48	0	1	0	0	0	0	0	0	0	12850	986	34	3		3	PTGER3	1	71331711	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3772735	71331711	177918910	41	51628											
LHX8	431707	broad.mit.edu	37	chr1	75602868	75602868	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgccccggtccatggcCtcgggctccggctgccctcc	11	21	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75602868	T	T	75602868	2	4	48	1	0	0	0	0	0	0	0	1	8848	668	24	4		4	LHX8	1	75602868	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4271157	75602868	173647753	42	51629											
LHX8	431707	broad.mit.edu	37	chr1	75606693	75606693	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgacctatgctggcatgtCcggtgtctctcctgcagtgt	11	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75606693	A	A	75606693	2	1	48	1	0	0	0	0	0	0	0	1	8848	842	30	3		3	LHX8	1	75606693	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3825	75606693	173643928	43	51630											
SLC44A5	204962	broad.mit.edu	37	chr1	75699718	75699718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaagacccagaagaggCatccagctatgaacctcaga	9	11	2	6			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75699718	A	A	75699718	3	1	48	1	0	0	0	0	1	0	0	0	14753	710	25	3	1516	3	SLC44A5	1	75699718	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	93025	75699718	173550903	44	51631											
SLC44A5	204962	broad.mit.edu	37	chr1	75911683	75911683	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcagcaactcatatgagctCtacctccaaaacaaactcca	3	14	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75911683	T	T	75911683	1	4	48	0	1	0	0	0	0	0	0	0	14753	928	32	4		4	SLC44A5	1	75911683	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	211965	75911683	173338938	45	51632											
MCOLN3	55283	broad.mit.edu	37	chr1	85498862	85498862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctggagtggatggaggCtagacaaagatctgaactct	12	6	3	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85498862	A	A	85498862	1	1	48	0	1	0	0	0	0	0	0	0	9490	812	28	3		3	MCOLN3	1	85498862	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9587179	85498862	163751759	46	51633											
COL24A1	255631	broad.mit.edu	37	chr1	86453278	86453278	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctctctcttcttcttctTcttacctttggtccttcagg	5	13	7	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86453278	G	G	86453278	1	3	48	0	1	0	0	0	0	0	0	0	3715	1798	62	5		5	COL24A1	1	86453278	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	954416	86453278	162797343	47	51634											
DNTTIP2	30836	broad.mit.edu	37	chr1	94344724	94344724	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttccggctccctcgcgaCcaccacgacttccctcttcc	5	21	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94344724	A	A	94344724	1	1	48	0	1	0	0	0	0	0	0	0	4722	522	18	3		3	DNTTIP2	1	94344724	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7891446	94344724	154905897	48	51635											
TMEM56	148534	broad.mit.edu	37	chr1	95628883	95628883	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcatgtgtcatatagttctCgtgccatggttttcagctcc	9	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95628883	T	T	95628883	1	4	48	0	1	0	0	0	0	0	0	0	16306	899	31	4		4	TMEM56	1	95628883	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1284159	95628883	153621738	49	51636											
COL11A1	1301	broad.mit.edu	37	chr1	103405970	103405970	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccatctctccctgcaggCccttggggacctttttctcc	7	17	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103405970	A	A	103405970	2	1	48	1	0	0	0	0	0	0	0	1	3699	726	26	3		3	COL11A1	1	103405970	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7777087	103405970	145844651	50	51637											
COL11A1	1301	broad.mit.edu	37	chr1	103453184	103453185	+	Intron	DNP	CC	AA	AA													agtgaatttaaagtcatttaCcaaccttttctcctgcttga							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	103453185	AA	AA	103453184	1	1	48	0	1	0	0	0	0	0	0	0	3699	522	18	3		3	COL11A1	1	103453184	Intron	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	47214	103453184	145797437	51	51638											
COL11A1	1301	broad.mit.edu	37	chr1	103544265	103544265	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggatagtcttctggggcaGgttttccagtgtggtcttca	15	7	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103544265	A	A	103544265	3	1	48	1	0	0	0	0	1	0	0	0	3699	1000	35	4	5400	4	COL11A1	1	103544265	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	91081	103544265	145706356	52	51639											
NTNG1	22854	broad.mit.edu	37	chr1	107866731	107866731	+	Intron	DEL	C	-	-													acaagaaaattaccatattgCtttttttttttaaaagctat					rs80083341		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107866731	-	-	107866731	6	5	48	0	1	1	0	1	0	0	0	0	10799	812	28	0		0	NTNG1	1	107866731	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	4322466	107866731	141383890	53	51640											
NTNG1	22854	broad.mit.edu	37	chr1	107979278	107979278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcctgtgtgttgtcttgTttctacagagtgttattgta	10	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107979278	C	C	107979278	1	2	48	0	1	0	0	0	0	0	0	0	10799	1740	60	5		5	NTNG1	1	107979278	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	112547	107979278	141271343	54	51641											
VAV3	10451	broad.mit.edu	37	chr1	108315476	108315476	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagggtttcactacaacaaaGgatatcatataaggtcattt	7	6	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108315476	C	C	108315476	1	2	48	0	1	0	0	0	0	0	0	0	17260	1015	35	4		4	VAV3	1	108315476	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	336198	108315476	140935145	55	51642											
EPS8L3	79574	broad.mit.edu	37	chr1	110304322	110304322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggagggcacgggagagGggcctgccaggagcttacag	20	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110304322	T	T	110304322	1	4	48	0	1	0	0	0	0	0	0	0	5239	1247	43	2		2	EPS8L3	1	110304322	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1988846	110304322	138946299	56	51643											
KCNA2	3737	broad.mit.edu	37	chr1	111145889	111145889	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttccattgagctgtgagtaCggtaataggtttcaatcaga	11	6	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111145889	G	G	111145889	1	3	48	0	1	0	0	0	0	0	0	0	8073	551	19	4		4	KCNA2	1	111145889	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	841567	111145889	138104732	57	51644											
RAP1A	5906	broad.mit.edu	37	chr1	112191377	112191377	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccactgtggtgccctcCtcaatctgctgagaccagta	10	13	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112191377	T	T	112191377	1	4	48	0	1	0	0	0	0	0	0	0	13143	696	24	4		4	RAP1A	1	112191377	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1045488	112191377	137059244	58	51645											
KCND3	3752	broad.mit.edu	37	chr1	112524390	112524390	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagagaagaaagcccagtTcggaggcacagctcttcagt	12	9	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112524390	A	A	112524390	3	1	48	1	0	0	0	0	1	0	0	0	8090	1783	62	5	1036	5	KCND3	1	112524390	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	333013	112524390	136726231	59	51646											
TSPAN2	10100	broad.mit.edu	37	chr1	115601639	115601639	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgaaggacttctgggTgggaagtttcaaacattctc	10	6	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115601639	A	A	115601639	1	1	48	0	1	0	0	0	0	0	0	0	16769	1711	59	5		5	TSPAN2	1	115601639	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3077249	115601639	133648982	60	51647											
NOTCH2	4853	broad.mit.edu	37	chr1	120506172	120506172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagtgaaaaccccataCcaaacataaacagagtgggc	8	10	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120506172	A	A	120506172	1	1	48	0	1	0	0	0	0	0	0	0	10643	522	18	3		3	NOTCH2	1	120506172	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4904533	120506172	128744449	61	51648											
PDE4DIP	9659	broad.mit.edu	37	chr1	144992377	144992377	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagctactccggagaatcGcttgaacccaggaggcggag	13	13	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144992377	A	A	144992377	1	1	48	0	1	0	0	0	0	0	0	0	11737	1102	38	4		4	PDE4DIP	1	144992377	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	24486205	144992377	104258244	62	51649											
PDE4DIP	9659	broad.mit.edu	37	chr1	145020321	145020321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgggccaccatgcctagCtaatttttgtatttttggta	10	8	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145020321	A	A	145020321	1	1	48	0	1	0	0	0	0	0	0	0	11737	812	28	3		3	PDE4DIP	1	145020321	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	27944	145020321	104230300	63	51650											
PDE4DIP	9659	broad.mit.edu	37	chr1	145025289	145025289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtaattttctaagaatgGtagtttcatttatggccagg	9	6	2	1	rs112449329		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145025289	T	T	145025289	1	4	48	0	1	0	0	0	0	0	0	0	11737	1276	44	3		3	PDE4DIP	1	145025289	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4968	145025289	104225332	64	51651											
PDE4DIP	9659	broad.mit.edu	37	chr1	145026525	145026525	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accccgctccatcttcccccCaccctgaggagccctgaact	6	21	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145026525	G	G	145026525	1	3	48	0	1	0	0	0	0	0	0	0	11737	609	21	4		4	PDE4DIP	1	145026525	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1236	145026525	104224096	65	51652											
NBPF9	400818	broad.mit.edu	37	chr1	145047039	145047039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagctatagagaggagaGgtcttgaggccaccagcagt	15	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145047039	T	T	145047039	1	4	48	0	1	0	0	0	0	0	0	0	10294	1015	35	2		2	NBPF9	1	145047039	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	20514	145047039	104203582	66	51653											
NBPF9	400818	broad.mit.edu	37	chr1	145051421	145051421	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagaaaaagagggaatcctCtctaacttattttatgaggc	8	6	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145051421	T	T	145051421	1	4	48	0	1	0	0	0	0	0	0	0	10294	928	32	4		4	NBPF9	1	145051421	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4382	145051421	104199200	67	51654											
NBPF9	400818	broad.mit.edu	37	chr1	145056919	145056919	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatcgagaccatcctggcTaacacggtgaaaccccatct	9	13	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145056919	C	C	145056919	1	2	48	0	1	0	0	0	0	0	0	0	10294	1537	53	5		5	NBPF9	1	145056919	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	5498	145056919	104193702	68	51655											
NBPF9	400818	broad.mit.edu	37	chr1	145069497	145069498	+	Intron	INS	-	A	A													atgtaagaatgtcatagcacINSaaaaaaatgcacagatattt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145069498	A	A	145069497	6	5	48	0	1	1	1	0	0	0	0	0	10294	493	17	0		0	NBPF9	1	145069497	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	12578	145069497	104181124	69	51656											
NBPF9	400818	broad.mit.edu	37	chr1	145072066	145072066	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatgggattcacttcaataAagcatcttcccactgtcata	6	11	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145072066	C	C	145072066	1	2	48	0	1	0	0	0	0	0	0	0	10294	29	1	5		5	NBPF9	1	145072066	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2569	145072066	104178555	70	51657											
NBPF9	400818	broad.mit.edu	37	chr1	145111362	145111362	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaccagctagctaatttcGgtatttttggtagagatggg	12	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145111362	A	A	145111362	1	1	48	0	1	0	0	0	0	0	0	0	10294	1131	39	4		4	NBPF9	1	145111362	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	39296	145111362	104139259	71	51658											
NBPF9	400818	broad.mit.edu	37	chr1	145190799	145190799	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaagtcctcattgacaTgtacggtaacatttacaagt	7	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145190799	C	C	145190799	1	2	48	0	1	0	0	0	0	0	0	0	10294	1479	51	5		5	NBPF9	1	145190799	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	79437	145190799	104059822	72	51659											
NBPF9	400818	broad.mit.edu	37	chr1	145191738	145191738	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaagaggaaggaagagacTgagaagaccctcaaagacag	12	6	1	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145191738	A	A	145191738	1	1	48	0	1	0	0	0	0	0	0	0	10294	1595	55	5		5	NBPF9	1	145191738	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	939	145191738	104058883	73	51660											
NOTCH2NL	388677	broad.mit.edu	37	chr1	145283255	145283255	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagtaatctaattggctagTaattgatgttagtgtgattt	9	3	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145283255	C	C	145283255	1	2	48	0	1	0	0	0	0	0	0	0	10644	1653	57	5		5	NOTCH2NL	1	145283255	3'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	91517	145283255	103967366	74	51661											
NBPF10	100132406	broad.mit.edu	37	chr1	145286839	145286840	+	Intron	INS	-	TT	TT													tgtcattttcttttcttttcINStttttttttttttttttttt					rs11487291		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	145286840	TT	TT	145286839	6	5	48	0	1	1	1	0	0	0	0	0	10287	928	32	0		0	NBPF10	1	145286839	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	3584	145286839	103963782	75	51662											
NBPF10	100132406	broad.mit.edu	37	chr1	145311569	145311569	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgtgtgTgtgtgtgtgtgtgtgtgtgt	20	0	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145311569	A	A	145311569	1	1	48	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145311569	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	24730	145311569	103939052	76	51663											
NBPF10	100132406	broad.mit.edu	37	chr1	145706616	145706616	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccccactagagaaaatcaCgggatccagcccttcccaca	6	16	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145706616	T	T	145706616	1	4	48	0	1	0	0	0	0	0	0	0	10287	551	19	4		4	NBPF10	1	145706616	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	395047	145706616	103544005	77	51664											
NBPF10	100132406	broad.mit.edu	37	chr1	146418202	146418202	+	Frame_Shift_Del	DEL	C	-	-													gggatgaaggttattcgactCtctcaattcctcctgaaagg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	146418202	-	-	146418202	7	5	48	1	0	1	0	1	0	0	0	0	10287	928	32	0		0	NBPF10	1	146418202	Frame_Shift_Del	DEL	C	TCGA-17-Z015-01A-01W-0746-08	711586	146418202	102832419	78	51665											
LOC200030	200030	broad.mit.edu	37	chr1	148000718	148000718	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctcagtcgtcctgccGggcgggccctgaggatgcaa	14	14	1	1	rs145915343	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148000718	A	A	148000718	1	1	48	0	1	0	0	0	0	0	0	0	8950	1131	39	4		4	LOC200030	1	148000718	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1582516	148000718	101249903	79	51666											
NBPF14	25832	broad.mit.edu	37	chr1	148003801	148003801	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctatgaaactcaggttaagCgttttctgcaagaacatggc	9	9	2	2	rs138972996	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148003801	T	T	148003801	1	4	48	0	1	0	0	0	0	0	0	0	10289	783	27	4		4	NBPF14	1	148003801	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3083	148003801	101246820	80	51667											
CELF3	11189	broad.mit.edu	37	chr1	151678486	151678486	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagctcagtgactgggagGcacacaccccagaagcaaat	11	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151678486	A	A	151678486	1	1	48	0	1	0	0	0	0	0	0	0	3247	1218	42	4		4	CELF3	1	151678486	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3674685	151678486	97572135	81	51668											
TCHHL1	126637	broad.mit.edu	37	chr1	152060367	152060367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcaagagacagtgagtGctgagaactgttagctaggt	13	5	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152060367	T	T	152060367	1	4	48	0	1	0	0	0	0	0	0	0	15823	1334	46	3		3	TCHHL1	1	152060367	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	381881	152060367	97190254	82	51669											
FLG	2312	broad.mit.edu	37	chr1	152275520	152275520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagaactgtgaggactgcCacgtgactgtattcctgagt	11	9	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152275520	A	A	152275520	3	1	48	1	0	0	0	0	1	0	0	0	5979	594	21	2	347	2	FLG	1	152275520	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	215153	152275520	96975101	83	51670											
FLG	2312	broad.mit.edu	37	chr1	152279608	152279609	+	Missense_Mutation	DNP	CC	AA	AA													gatggtttctggaagcagacCcagaccacctctcagagtct							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152279609	AA	AA	152279608	3	1	48	1	0	0	0	0	1	0	0	0	5979	623	22	2	4435	2	FLG	1	152279608	Missense_Mutation	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	4088	152279608	96971013	84	51671											
FLG	2312	broad.mit.edu	37	chr1	152283465	152283465	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccatctcttgactgctcCcgagaagatccatgatggtt	10	11	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283465	T	T	152283465	2	4	48	1	0	0	0	0	0	0	0	1	5979	610	22	4		4	FLG	1	152283465	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3857	152283465	96967156	85	51672											
FLG2	388698	broad.mit.edu	37	chr1	152326871	152326871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacctgtgcctgacccatGttgtccaaagccagaagact	8	12	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152326871	T	T	152326871	3	4	48	1	0	0	0	0	1	0	0	0	5980	1377	48	3	3788	3	FLG2	1	152326871	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	43406	152326871	96923750	86	51673											
FLG2	388698	broad.mit.edu	37	chr1	152327811	152327811	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgttgtccaaagccagcGgactgacctgagcctgatcc	10	14	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152327811	A	A	152327811	2	1	48	1	0	0	0	0	0	0	0	1	5980	1103	39	4		4	FLG2	1	152327811	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	940	152327811	96922810	87	51674											
KPRP	448834	broad.mit.edu	37	chr1	152733823	152733823	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaaaggtgactgagatAaccctctctcctgctctgaa	9	10	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152733823	T	T	152733823	1	4	48	0	1	0	0	0	0	0	0	0	8507	377	13	5		5	KPRP	1	152733823	3'UTR	SNP	A	TCGA-17-Z015-01A-01W-0746-08	406012	152733823	96516798	88	51675											
KPRP	448834	broad.mit.edu	37	chr1	152733877	152733877	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctattccacaatttccagtaCgctcttgtttgaatctctcc	4	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152733877	T	T	152733877	1	4	48	0	1	0	0	0	0	0	0	0	8507	551	19	4		4	KPRP	1	152733877	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	54	152733877	96516744	89	51676											
LCE1B	353132	broad.mit.edu	37	chr1	152785398	152785398	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggctcaactcaagcatagAggattcttctgtcttggagt	11	8	5	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152785398	G	G	152785398	1	3	48	0	1	0	0	0	0	0	0	0	8732	319	11	5		5	LCE1B	1	152785398	3'UTR	SNP	A	TCGA-17-Z015-01A-01W-0746-08	51521	152785398	96465223	90	51677											
PGLYRP3	114771	broad.mit.edu	37	chr1	153283229	153283229	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccatgctaactctgcaagTggagcacccacctactatgt	7	13	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153283229	C	C	153283229	1	2	48	0	1	0	0	0	0	0	0	0	11890	1711	59	5		5	PGLYRP3	1	153283229	5'Flank	SNP	T	TCGA-17-Z015-01A-01W-0746-08	497831	153283229	95967392	91	51678											
RPS27	6232	broad.mit.edu	37	chr1	153964363	153964363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaagcggggataaatggGtgataaaagggcttaagttg	14	3	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153964363	T	T	153964363	1	4	48	0	1	0	0	0	0	0	0	0	13749	1276	44	3		3	RPS27	1	153964363	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	681134	153964363	95286258	92	51679											
NUP210L	91181	broad.mit.edu	37	chr1	153965279	153965279	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactagaaatcttcattcccCtgcagttaagagaaacttgt	7	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153965279	T	T	153965279	1	4	48	0	1	0	0	0	0	0	0	0	10856	696	24	4		4	NUP210L	1	153965279	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	916	153965279	95285342	93	51680											
TPM3	7170	broad.mit.edu	37	chr1	154148630	154148630	+	Frame_Shift_Del	DEL	T	-	-													ctttttcagcttcttccagcTtttgcagggcagtggccagg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154148630	-	-	154148630	7	5	48	1	0	1	0	1	0	0	0	0	16531	1609	56	0	802	0	TPM3	1	154148630	Frame_Shift_Del	DEL	T	TCGA-17-Z015-01A-01W-0746-08	183351	154148630	95101991	94	51681											
UBE2Q1	55585	broad.mit.edu	37	chr1	154528093	154528093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctcttagtttgggcccCacaccaataactagttctct	7	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154528093	A	A	154528093	1	1	48	0	1	0	0	0	0	0	0	0	16995	609	21	2		2	UBE2Q1	1	154528093	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	379463	154528093	94722528	95	51682											
KCNN3	3782	broad.mit.edu	37	chr1	154744596	154744596	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgagggccccgatgctgcGggacgaggcatcggtgaaga	18	9	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154744596	A	A	154744596	3	1	48	1	0	0	0	0	1	0	0	0	8150	1116	39	4	916	4	KCNN3	1	154744596	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	216503	154744596	94506025	96	51683											
UBQLN4	56893	broad.mit.edu	37	chr1	156011313	156011313	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccaaaagctggatcatcTgctgcatgagttgctgctgg	12	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156011313	A	A	156011313	3	1	48	1	0	0	0	0	1	0	0	0	17025	1580	55	5	197	5	UBQLN4	1	156011313	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1266717	156011313	93239308	97	51684											
ARHGEF11	9826	broad.mit.edu	37	chr1	156921173	156921173	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggaagtcggggatctgctTgctcttccactggcctgttc	12	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156921173	C	C	156921173	1	2	48	0	1	0	0	0	0	0	0	0	898	1827	63	5		5	ARHGEF11	1	156921173	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	909860	156921173	92329448	98	51685											
KIRREL	55243	broad.mit.edu	37	chr1	158047416	158047416	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgtgctgcgatgccctAtatttcctggcgcccacaca	9	14	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158047416	G	G	158047416	1	3	48	0	1	0	0	0	0	0	0	0	8395	464	16	5		5	KIRREL	1	158047416	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1126243	158047416	91203205	99	51686											
OR10X1	128367	broad.mit.edu	37	chr1	158549796	158549796	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaactatgtatatgtaGgtaatgtgtttttctcattt	7	4	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158549796	C	C	158549796	1	2	48	0	1	0	0	0	0	0	0	0	11016	1015	35	4		4	OR10X1	1	158549796	5'Flank	SNP	G	TCGA-17-Z015-01A-01W-0746-08	502380	158549796	90700825	100	51687											
OR10Z1	128368	broad.mit.edu	37	chr1	158576995	158576995	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattcattatggctgtgcttCcttcgtgtacctgaggccca	9	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158576995	T	T	158576995	3	4	48	1	0	0	0	0	1	0	0	0	11017	855	30	4	769	4	OR10Z1	1	158576995	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	27199	158576995	90673626	101	51688											
SPTA1	6708	broad.mit.edu	37	chr1	158580934	158580934	+	3'UTR	SNP	C	A	A													aacacaagcacacacacacaCacacacacacacacacacac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158580934	A	A	158580934	1	1	48	0	1	0	0	0	0	0	0	0	15234	493	17	3		3	SPTA1	1	158580934	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3939	158580934	90669687	102	51689	247	2									
SPTA1	6708	broad.mit.edu	37	chr1	158580936	158580936	+	3'UTR	SNP	C	A	A													cacaagcacacacacacacaCacacacacacacacacacac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158580936	A	A	158580936	1	1	48	0	1	0	0	0	0	0	0	0	15234	493	17	3		3	SPTA1	1	158580936	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2	158580936	90669685	103	51690	247	2									
SPTA1	6708	broad.mit.edu	37	chr1	158597361	158597361	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttagcatttctacatttggGccagtcccttttggagaatg	9	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158597361	C	C	158597361	1	2	48	0	1	0	0	0	0	0	0	0	15234	1218	42	4		4	SPTA1	1	158597361	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	16425	158597361	90653260	104	51691											
SPTA1	6708	broad.mit.edu	37	chr1	158645855	158645855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctatttgactccctttaCtcttatttcttctctcgcta	3	13	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158645855	A	A	158645855	1	1	48	0	1	0	0	0	0	0	0	0	15234	580	20	3		3	SPTA1	1	158645855	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	48494	158645855	90604766	105	51692											
OR6N1	128372	broad.mit.edu	37	chr1	158735630	158735630	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggggttgaggaagggtgtGagcactgagtagaccactgc	17	6	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158735630	T	T	158735630	2	4	48	1	0	0	0	0	0	0	0	1	11300	1277	45	3		3	OR6N1	1	158735630	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	89775	158735630	90514991	106	51693											
OR10J1	26476	broad.mit.edu	37	chr1	159410295	159410295	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccggaagaaggcttttgcCacctgtgcatcccacctcac	10	15	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159410295	T	T	159410295	2	4	48	1	0	0	0	0	0	0	0	1	11004	581	21	4		4	OR10J1	1	159410295	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	674665	159410295	89840326	107	51694											
CRP	1401	broad.mit.edu	37	chr1	159683718	159683718	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccacccactgtaaaactgTatcctatatccttagaccaa	3	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159683718	A	A	159683718	3	1	48	1	0	0	0	0	1	0	0	0	3927	1638	57	5	406	5	CRP	1	159683718	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	273423	159683718	89566903	108	51695											
FCRL6	343413	broad.mit.edu	37	chr1	159777723	159777723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggaaagaaggggaggGgaagggaaaggaataaagag	21	0	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159777723	T	T	159777723	1	4	48	0	1	0	0	0	0	0	0	0	5856	1247	43	2		2	FCRL6	1	159777723	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	94005	159777723	89472898	109	51696											
FCRL6	343413	broad.mit.edu	37	chr1	159779445	159779445	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacagtgtctccagagagagGagtgagcccaagaagctgtc	13	9	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159779445	C	C	159779445	3	2	48	1	0	0	0	0	1	0	0	0	5856	1165	41	4	876	4	FCRL6	1	159779445	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1722	159779445	89471176	110	51697											
KCNJ10	3766	broad.mit.edu	37	chr1	160012018	160012018	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagggggtgtggttggccGgggggtccagctccagcagg	20	10	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160012018	C	C	160012018	3	2	48	1	0	0	0	0	1	0	0	0	8114	1116	39	4	838	4	KCNJ10	1	160012018	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	232573	160012018	89238603	111	51698											
VANGL2	57216	broad.mit.edu	37	chr1	160393760	160393760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgacctcattcaggctgCtggagtgttggagctagggg	16	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160393760	A	A	160393760	1	1	48	0	1	0	0	0	0	0	0	0	17247	812	28	3		3	VANGL2	1	160393760	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	381742	160393760	88856861	112	51699											
LY9	4063	broad.mit.edu	37	chr1	160789241	160789241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgctgctcaaagtgtgGtctgctggccagcagtgtgg	15	9	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160789241	T	T	160789241	1	4	48	0	1	0	0	0	0	0	0	0	9189	1276	44	3		3	LY9	1	160789241	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	395481	160789241	88461380	113	51700											
FCGR2C	9103	broad.mit.edu	37	chr1	161559177	161559177	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggttccctggggcccTtgtggtgggatgtatgagca	16	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161559177	A	A	161559177	1	1	48	0	1	0	0	0	0	0	0	0	5840	1624	56	5		5	FCGR2C	1	161559177	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	769936	161559177	87691444	114	51701											
NOS1AP	9722	broad.mit.edu	37	chr1	162268142	162268142	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgacctgcagtcatgaaGccactgactatgcatgttgt	9	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162268142	C	C	162268142	1	2	48	0	1	0	0	0	0	0	0	0	10637	986	34	4		4	NOS1AP	1	162268142	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	708965	162268142	86982479	115	51702											
DDR2	4921	broad.mit.edu	37	chr1	162745598	162745598	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttcccgccacgagccCcctaattcttcctccagcga	5	18	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162745598	A	A	162745598	2	1	48	1	0	0	0	0	0	0	0	1	4370	610	22	2		2	DDR2	1	162745598	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	477456	162745598	86505023	116	51703											
RGS4	5999	broad.mit.edu	37	chr1	163039311	163039311	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtctgccggcttcttgcTtgaggaggtaagattgcttt	13	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163039311	G	G	163039311	3	3	48	1	0	0	0	0	1	0	0	0	13416	1606	56	5	334	5	RGS4	1	163039311	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	293713	163039311	86211310	117	51704											
PBX1	5087	broad.mit.edu	37	chr1	164662381	164662383	+	Intron	DEL	CAG	-	-													tccccactgccactgtaacaCagcagatttaaactacaagc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164662383	-	-	164662381	6	5	48	0	1	1	0	1	0	0	0	0	11586	493	17	0		0	PBX1	1	164662381	Intron	DEL	CAG	TCGA-17-Z015-01A-01W-0746-08	1623070	164662381	84588240	118	51705											
DCAF6	55827	broad.mit.edu	37	chr1	167960554	167960554	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtacgaatatatgatcggcGaatgctgggcacaagagcta	12	7	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167960554	A	A	167960554	3	1	48	1	0	0	0	0	1	0	0	0	4307	1058	37	4	687	4	DCAF6	1	167960554	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3298173	167960554	81290067	119	51706											
BLZF1	8548	broad.mit.edu	37	chr1	169352886	169352886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatactgtatcgagcattcCttcctggaaactcccttgac	6	12	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169352886	A	A	169352886	1	1	48	0	1	0	0	0	0	0	0	0	1459	696	24	2		2	BLZF1	1	169352886	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1392332	169352886	79897735	120	51707											
SELL	6402	broad.mit.edu	37	chr1	169679513	169679513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagactatgtataactagtGgatatttaagaaaaatgaat	7	2	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169679513	T	T	169679513	1	4	48	0	1	0	0	0	0	0	0	0	14129	1363	47	2		2	SELL	1	169679513	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	326627	169679513	79571108	121	51708											
SELE	6401	broad.mit.edu	37	chr1	169694799	169694799	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagatattggcaagtttggaGggttcaaggagaaacagagc	14	4	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169694799	C	C	169694799	1	2	48	0	1	0	0	0	0	0	0	0	14126	1015	35	4		4	SELE	1	169694799	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	15286	169694799	79555822	122	51709											
DNM3	26052	broad.mit.edu	37	chr1	171821968	171821968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgattgatgacttgctgGctgcttggcatggtgtagtc	15	7	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171821968	T	T	171821968	1	4	48	0	1	0	0	0	0	0	0	0	4713	1218	42	3		3	DNM3	1	171821968	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2127169	171821968	77428653	123	51710											
FASLG	356	broad.mit.edu	37	chr1	172633365	172633365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatatgttagactgttgcCatttacggttttaaaatctt	7	5	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172633365	A	A	172633365	1	1	48	0	1	0	0	0	0	0	0	0	5739	609	21	2		2	FASLG	1	172633365	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	811397	172633365	76617256	124	51711											
RC3H1	149041	broad.mit.edu	37	chr1	173939679	173939679	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgtgcaaatgtacagCtggccccacgagggcatcct	13	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173939679	T	T	173939679	3	4	48	1	0	0	0	0	1	0	0	0	13274	797	28	4	2151	4	RC3H1	1	173939679	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1306314	173939679	75310942	125	51712											
TNN	63923	broad.mit.edu	37	chr1	175049310	175049310	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgcagtggtcaccccaCagggcctgcagctgctcaag	12	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175049310	T	T	175049310	4	4	48	1	0	0	0	0	0	1	0	0	16446	479	17	4	806	4	TNN	1	175049310	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1109631	175049310	74201311	126	51713											
TNR	7143	broad.mit.edu	37	chr1	175293635	175293635	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggagaaagggcgtccttGatgatagctgagggagtccc	16	7	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175293635	T	T	175293635	3	4	48	1	0	0	0	0	1	0	0	0	16461	1299	45	3	270	3	TNR	1	175293635	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	244325	175293635	73956986	127	51714											
TNR	7143	broad.mit.edu	37	chr1	175306892	175306892	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccttggatcatagaaggTcttagcaggcctcctggtac	11	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175306892	C	C	175306892	1	2	48	0	1	0	0	0	0	0	0	0	16461	1682	58	5		5	TNR	1	175306892	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	13257	175306892	73943729	128	51715											
ASTN1	460	broad.mit.edu	37	chr1	176983668	176983668	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtggtgtgaaaaggaagAgagggacagcttgattttca	16	3	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176983668	G	G	176983668	1	3	48	0	1	0	0	0	0	0	0	0	1068	319	11	5		5	ASTN1	1	176983668	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1676776	176983668	72266953	129	51716											
FAM5B	57795	broad.mit.edu	37	chr1	177155694	177155694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcgctccttgtctgtgcCttcaaagatacttatgtaga	8	9	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177155694	A	A	177155694	1	1	48	0	1	0	0	0	0	0	0	0	5644	696	24	2		2	FAM5B	1	177155694	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	172026	177155694	72094927	130	51717											
SEC16B	89866	broad.mit.edu	37	chr1	177909875	177909875	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtttccagatgggttaGgggcagaaagtaagagagga	16	5	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177909875	C	C	177909875	1	2	48	0	1	0	0	0	0	0	0	0	14100	1015	35	4		4	SEC16B	1	177909875	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	754181	177909875	71340746	131	51718											
RALGPS2	55103	broad.mit.edu	37	chr1	178753642	178753642	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgatgttcttaaggttacAccagaagaatatgcggtaag	10	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178753642	G	G	178753642	2	3	48	1	0	0	0	0	0	0	0	1	13126	146	6	5		5	RALGPS2	1	178753642	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	843767	178753642	70496979	132	51719											
TOR3A	64222	broad.mit.edu	37	chr1	179064318	179064318	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcccagggctgcaagTctatttcccagaggattaac	8	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179064318	A	A	179064318	3	1	48	1	0	0	0	0	1	0	0	0	16500	1667	58	5	1181	5	TOR3A	1	179064318	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	310676	179064318	70186303	133	51720											
CACNA1E	777	broad.mit.edu	37	chr1	181480071	181480071	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgtggttatgaacttccCaatgcttacgtccttattct	6	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181480071	T	T	181480071	1	4	48	0	1	0	0	0	0	0	0	0	2568	609	21	4		4	CACNA1E	1	181480071	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2415753	181480071	67770550	134	51721											
NMNAT2	23057	broad.mit.edu	37	chr1	183221760	183221760	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggccattgtgttgccGgaggacgaggggctgctagc	20	8	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183221760	A	A	183221760	1	1	48	0	1	0	0	0	0	0	0	0	10594	1131	39	4		4	NMNAT2	1	183221760	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1741689	183221760	66028861	135	51722											
NMNAT2	23057	broad.mit.edu	37	chr1	183230509	183230510	+	Intron	DNP	TG	CT	CT													taccaagcaactacttagcaTggcagaatccgcttccattc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	183230510	CT	CT	183230509	1	2	48	0	1	0	0	0	0	0	0	0	10594	1479	51	5		5	NMNAT2	1	183230509	Intron	DNP	TG	TCGA-17-Z015-01A-01W-0746-08	8749	183230509	66020112	136	51723											
NMNAT2	23057	broad.mit.edu	37	chr1	183387498	183387498	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggcgaggctccggcgGtggatgctgtggactccaag	18	9	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183387498	T	T	183387498	1	4	48	0	1	0	0	0	0	0	0	0	10594	1276	44	3		3	NMNAT2	1	183387498	5'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	156989	183387498	65863123	137	51724											
C1orf26	54823	broad.mit.edu	37	chr1	185195994	185195994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgccttcttttgagctacCcgatctttcttctgagcaat	6	12	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185195994	A	A	185195994	1	1	48	0	1	0	0	0	0	0	0	0	2057	638	22	2		2	C1orf26	1	185195994	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1808496	185195994	64054627	138	51725											
KCNT2	343450	broad.mit.edu	37	chr1	196309515	196309515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtaatctggaaggtccaTgataaaacgacctggacaca	10	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196309515	G	G	196309515	3	3	48	1	0	0	0	0	1	0	0	0	8162	1464	51	5	1720	5	KCNT2	1	196309515	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	11113521	196309515	52941106	139	51726											
DENND1B	163486	broad.mit.edu	37	chr1	197641096	197641096	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaagtttttcttcatcccAagcataacaaagtacaatag	4	9	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197641096	C	C	197641096	1	2	48	0	1	0	0	0	0	0	0	0	4467	145	5	5		5	DENND1B	1	197641096	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1331581	197641096	51609525	140	51727											
TMEM9	252839	broad.mit.edu	37	chr1	201115898	201115898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgctgcgctcctcgtaCctgcactcgcacagcaggca	12	15	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201115898	A	A	201115898	3	1	48	1	0	0	0	0	1	0	0	0	16340	506	18	3	326	3	TMEM9	1	201115898	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3474802	201115898	48134723	141	51728											
PKP1	5317	broad.mit.edu	37	chr1	201263122	201263122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactatgggaccaccagcagGagcagctactactccaagtt	9	12	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201263122	T	T	201263122	3	4	48	1	0	0	0	0	1	0	0	0	12079	1165	41	3	261	3	PKP1	1	201263122	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	147224	201263122	47987499	142	51729											
RNPEP	6051	broad.mit.edu	37	chr1	201958761	201958761	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttcttgggcagtcttggatCctctgtctgagtccagagcc	12	11	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201958761	G	G	201958761	1	3	48	0	1	0	0	0	0	0	0	0	13620	870	30	4		4	RNPEP	1	201958761	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	695639	201958761	47291860	143	51730											
LGR6	59352	broad.mit.edu	37	chr1	202288055	202288055	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccctggtagccttctctgAtgtggatctcattctggaag	12	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202288055	T	T	202288055	3	4	48	1	0	0	0	0	1	0	0	0	8830	333	12	5	2841	5	LGR6	1	202288055	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	329294	202288055	46962566	144	51731											
PLEKHA6	22874	broad.mit.edu	37	chr1	204218035	204218035	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgcagcttttctgggtaggCgggctggcttccaaacatct	12	11	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204218035	T	T	204218035	3	4	48	1	0	0	0	0	1	0	0	0	12155	768	27	4	1452	4	PLEKHA6	1	204218035	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1929980	204218035	45032586	145	51732											
LRRN2	10446	broad.mit.edu	37	chr1	204593884	204593884	+	Intron	DEL	C	-	-													ccctggcggttccccccccaCccccccccccgggagctgag					rs143936900		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	204593884	-	-	204593884	6	5	48	0	1	1	0	1	0	0	0	0	9122	522	18	0		0	LRRN2	1	204593884	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	375849	204593884	44656737	146	51733											
NFASC	23114	broad.mit.edu	37	chr1	204923420	204923420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgacttccgcagtggcgGgcggccggaggaatatgagg	18	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204923420	T	T	204923420	3	4	48	1	0	0	0	0	1	0	0	0	10454	1232	43	2	334	2	NFASC	1	204923420	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	329536	204923420	44327201	147	51734											
CR1L	1379	broad.mit.edu	37	chr1	207830486	207830486	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagattttgtgcacatgacCtccaaaaataaaaaatggaa	7	6	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207830486	T	T	207830486	1	4	48	0	1	0	0	0	0	0	0	0	3873	696	24	4		4	CR1L	1	207830486	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2907066	207830486	41420135	148	51735											
LAMB3	3914	broad.mit.edu	37	chr1	209797177	209797177	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggttatccgggtgcccctCtcctcacctgaaggatcagc	12	14	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209797177	A	A	209797177	1	1	48	0	1	0	0	0	0	0	0	0	8684	928	32	3		3	LAMB3	1	209797177	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1966691	209797177	39453444	149	51736											
HSD11B1	3290	broad.mit.edu	37	chr1	209874938	209874938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagaacctctgaacacaGtgtttacctactttttactc	6	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209874938	T	T	209874938	1	4	48	0	1	0	0	0	0	0	0	0	7442	1044	36	3		3	HSD11B1	1	209874938	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	77761	209874938	39375683	150	51737											
C1orf107	27042	broad.mit.edu	37	chr1	210004486	210004486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgtgagttggatgaaaGgacatgaatccaaaataggg	13	4	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210004486	T	T	210004486	1	4	48	0	1	0	0	0	0	0	0	0	2001	1015	35	2		2	C1orf107	1	210004486	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	129548	210004486	39246135	151	51738											
KCNH1	3756	broad.mit.edu	37	chr1	211034962	211034962	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccagtggtatagagtatAgagtatatactgaacaagag	11	4	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211034962	G	G	211034962	1	3	48	0	1	0	0	0	0	0	0	0	8101	435	15	5		5	KCNH1	1	211034962	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1030476	211034962	38215659	152	51739											
PTPN14	5784	broad.mit.edu	37	chr1	214546293	214546293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggatatatttttggggcCgaatgaattagttcaatgaa	10	4	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214546293	A	A	214546293	1	1	48	0	1	0	0	0	0	0	0	0	12889	667	23	1		1	PTPN14	1	214546293	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3511331	214546293	34704328	153	51740											
KCNK2	3776	broad.mit.edu	37	chr1	215408511	215408511	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctttaaataaccttagGcatagccataggtgaggact	8	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215408511	C	C	215408511	1	2	48	0	1	0	0	0	0	0	0	0	8136	1218	42	4		4	KCNK2	1	215408511	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	862218	215408511	33842110	154	51741											
USH2A	7399	broad.mit.edu	37	chr1	216246298	216246298	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcatgcgaggctatcacTcgatacaggtattcttaaat	7	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216246298	A	A	216246298	2	1	48	1	0	0	0	0	0	0	0	1	17162	1538	54	5		5	USH2A	1	216246298	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	837787	216246298	33004323	155	51742											
USH2A	7399	broad.mit.edu	37	chr1	216259098	216259098	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgtgtgtgtgtgttttaGagggacttctctgtcagtct	14	5	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216259098	C	C	216259098	1	2	48	0	1	0	0	0	0	0	0	0	17162	957	33	4		4	USH2A	1	216259098	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	12800	216259098	32991523	156	51743											
MARK1	4139	broad.mit.edu	37	chr1	220799554	220799554	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgacattgtcttggccAtcctggaactgctaacctat	7	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220799554	T	T	220799554	1	4	48	0	1	0	0	0	0	0	0	0	9404	232	8	5		5	MARK1	1	220799554	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4540456	220799554	28451067	157	51744											
MARK1	4139	broad.mit.edu	37	chr1	220805569	220805569	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaccatgggctttgcaCgagatgaaataaatgatgcc	11	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220805569	T	T	220805569	4	4	48	1	0	0	0	0	0	1	0	0	9404	528	19	4	1078	4	MARK1	1	220805569	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6015	220805569	28445052	158	51745											
SUSD4	55061	broad.mit.edu	37	chr1	223497485	223497485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacatcccattgtaattcCagtatctagtatggcatcag	6	11	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223497485	A	A	223497485	1	1	48	0	1	0	0	0	0	0	0	0	15528	609	21	2		2	SUSD4	1	223497485	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2691916	223497485	25753136	159	51746											
CDC42BPA	8476	broad.mit.edu	37	chr1	227218937	227218938	+	Intron	DNP	CC	AA	AA													ttcctagatgaaagccaatcCctgttctcaaggtagattag							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	227218938	AA	AA	227218937	1	1	48	0	1	0	0	0	0	0	0	0	3102	638	22	2		2	CDC42BPA	1	227218937	Intron	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	3721452	227218937	22031684	160	51747											
CDC42BPA	8476	broad.mit.edu	37	chr1	227219179	227219179	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctagcatcaggattgaacAtttgttattagatgctgaga	10	5	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227219179	G	G	227219179	3	3	48	1	0	0	0	0	1	0	0	0	3102	217	8	5	1709	5	CDC42BPA	1	227219179	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	242	227219179	22031442	161	51748											
ACTA1	58	broad.mit.edu	37	chr1	229567937	229567937	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgatctcgcgctcagctgcGgagggcagaagcaggagagg	17	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229567937	C	C	229567937	1	2	48	0	1	0	0	0	0	0	0	0	191	1131	39	4		4	ACTA1	1	229567937	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2348758	229567937	19682684	162	51749											
SIPA1L2	57568	broad.mit.edu	37	chr1	232579424	232579424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggatgactggttgctggGtgagcttctgaaaggttgag	18	4	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232579424	T	T	232579424	3	4	48	1	0	0	0	0	1	0	0	0	14443	1261	44	3	1855	3	SIPA1L2	1	232579424	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3011487	232579424	16671197	163	51750											
LYST	1130	broad.mit.edu	37	chr1	235904858	235904858	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtagtctcccaagctgcattCggaaggtctccttacaagac	9	12	2	1	rs148018560		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235904858	G	G	235904858	3	3	48	1	0	0	0	0	1	0	0	0	9216	884	31	4	3275	4	LYST	1	235904858	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3325434	235904858	13345763	164	51751											
ACTN2	88	broad.mit.edu	37	chr1	236881119	236881119	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggaagggatctgaaatccGatggacctgtgctaaaccgt	13	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236881119	C	C	236881119	1	2	48	0	1	0	0	0	0	0	0	0	205	1073	37	4		4	ACTN2	1	236881119	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	976261	236881119	12369502	165	51752											
ACTN2	88	broad.mit.edu	37	chr1	236894645	236894645	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgtgtttgctgagttacAggaaatttgaagactacaaa	9	4	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236894645	G	G	236894645	1	3	48	0	1	0	0	0	0	0	0	0	205	203	7	5		5	ACTN2	1	236894645	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	13526	236894645	12355976	166	51753											
RYR2	6262	broad.mit.edu	37	chr1	237900637	237900638	+	Intron	DNP	GC	AA	AA													ggatgtccagcttgcaccacGcagtttgttacactcggcac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	237900638	AA	AA	237900637	1	1	48	0	1	0	0	0	0	0	0	0	13880	1102	38	4		4	RYR2	1	237900637	Intron	DNP	GC	TCGA-17-Z015-01A-01W-0746-08	1005992	237900637	11349984	167	51754											
CHRM3	1131	broad.mit.edu	37	chr1	240072406	240072406	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtgcaacaaaacattcaGaaccactttcaagatgctgc	6	11	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240072406	T	T	240072406	3	4	48	1	0	0	0	0	1	0	0	0	3409	942	33	3	1657	3	CHRM3	1	240072406	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2171769	240072406	9178215	168	51755											
FMN2	56776	broad.mit.edu	37	chr1	240497607	240497607	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacttttcaatgtttttagAgaaaagtaatcttttttatc	5	4	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240497607	T	T	240497607	1	4	48	0	1	0	0	0	0	0	0	0	6008	319	11	5		5	FMN2	1	240497607	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	425201	240497607	8753014	169	51756											
RGS7	6000	broad.mit.edu	37	chr1	241463959	241463959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccacagtttatctattcaCccactaaaagacattttggt	4	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241463959	A	A	241463959	1	1	48	0	1	0	0	0	0	0	0	0	13419	522	18	3		3	RGS7	1	241463959	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	966352	241463959	7786662	170	51757											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242159538	242159538	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgactccaggcagccaaatGtctcctgggaggcgtaggtc	13	12	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242159538	A	A	242159538	3	1	48	1	0	0	0	0	1	0	0	0	9325	1377	48	4	76	4	MAP1LC3C	1	242159538	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	695579	242159538	7091083	171	51758											
CEP170	9859	broad.mit.edu	37	chr1	243362482	243362482	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atataatggagtaccacgggGcatagcagaaatatctggaa	11	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243362482	A	A	243362482	3	1	48	1	0	0	0	0	1	0	0	0	3280	1203	42	4	4329	4	CEP170	1	243362482	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1202944	243362482	5888139	172	51759											
KIF26B	55083	broad.mit.edu	37	chr1	245645580	245645581	+	Intron	INS	-	G	G													tttttgcatttttagtagacINSggggtttcaccatattgtcc					rs141850727	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	245645581	G	G	245645580	6	5	48	0	1	1	1	0	0	0	0	0	8365	551	19	0		0	KIF26B	1	245645580	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	2283098	245645580	3605041	173	51760											
OR2W5	441932	broad.mit.edu	37	chr1	247654449	247654449	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgggaaaggacaatgccaGttacctacaggcattcatcc	9	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247654449	A	A	247654449	3	1	48	1	0	0	0	0	1	0	0	0	11128	1029	36	4	22	4	OR2W5	1	247654449	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2008869	247654449	1596172	174	51761											
OR2C3	81472	broad.mit.edu	37	chr1	247695256	247695256	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatccacacaagccagttgCataatgaggggcatctcgca	10	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695256	T	T	247695256	3	4	48	1	0	0	0	0	1	0	0	0	11087	710	25	4	408	4	OR2C3	1	247695256	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	40807	247695256	1555365	175	51762											
OR2G2	81470	broad.mit.edu	37	chr1	247751499	247751499	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttataatgcacatattcGgaaaataaatagatctaagt	5	4	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247751499	T	T	247751499	1	4	48	0	1	0	0	0	0	0	0	0	11092	1131	39	1		1	OR2G2	1	247751499	5'Flank	SNP	G	TCGA-17-Z015-01A-01W-0746-08	56243	247751499	1499122	176	51763											
TRIM58	25893	broad.mit.edu	37	chr1	248039252	248039252	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccgagtctgctcttgaccGccgacctgcgcagtgtgcag	12	15	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248039252	A	A	248039252	3	1	48	1	0	0	0	0	1	0	0	0	16656	1087	38	4	944	4	TRIM58	1	248039252	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	287753	248039252	1211369	177	51764											
OR2W3	343171	broad.mit.edu	37	chr1	248059191	248059191	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgggctgtgccatccagctCttcctgttcctgggtctggg	13	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059191	T	T	248059191	2	4	48	1	0	0	0	0	0	0	0	1	11127	900	32	4		4	OR2W3	1	248059191	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	19939	248059191	1191430	178	51765											
OR2L13	284521	broad.mit.edu	37	chr1	248097638	248097638	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgttgaagttgtcctgtGcagacacaacacgctatgaa	9	10	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248097638	T	T	248097638	1	4	48	0	1	0	0	0	0	0	0	0	11100	1334	46	3		3	OR2L13	1	248097638	5'Flank	SNP	G	TCGA-17-Z015-01A-01W-0746-08	38447	248097638	1152983	179	51766											
OR2L13	284521	broad.mit.edu	37	chr1	248138843	248138843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagaggacaaggttctgGctgtgttctacaccatcctc	9	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248138843	T	T	248138843	1	4	48	0	1	0	0	0	0	0	0	0	11100	1218	42	3		3	OR2L13	1	248138843	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	41205	248138843	1111778	180	51767											
OR2L13	284521	broad.mit.edu	37	chr1	248247091	248247091	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaaggctgacacaaccttGtcgtggttagtggacctgtg	13	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247091	A	A	248247091	1	1	48	0	1	0	0	0	0	0	0	0	11100	1392	48	4		4	OR2L13	1	248247091	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	108248	248247091	1003530	181	51768											
OR2M7	391196	broad.mit.edu	37	chr1	248487861	248487861	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagttgaaggtctgattctCccatgccatgatgaatatgc	10	8	2	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248487861	A	A	248487861	4	1	48	1	0	0	0	0	0	1	0	0	11108	864	30	3	931	3	OR2M7	1	248487861	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	240770	248487861	762760	182	51769											
OR2T10	127069	broad.mit.edu	37	chr1	248756858	248756858	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgacagaaatatatgtcAagtctatgagtgagagctgg	12	5	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248756858	T	T	248756858	4	4	48	1	0	0	0	0	0	1	0	0	11111	131	5	5	729	5	OR2T10	1	248756858	Nonsense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	268997	248756858	493763	183	51770											
COLEC11	78989	broad.mit.edu	37	chr2	3691618	3691618	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctacgacgaggaggactgCgtggagatggtggcctcggg	19	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3691618	T	T	3691618	2	4	48	1	0	0	0	0	0	0	0	1	3743	776	27	4		4	COLEC11	2	3691618	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08		3691618	239507755	184	51771											
KIDINS220	57498	broad.mit.edu	37	chr2	8940715	8940715	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagttaatcatgttttcaTatttttttctaaaaatttct	2	5	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8940715	C	C	8940715	1	2	48	0	1	0	0	0	0	0	0	0	8341	1421	49	5		5	KIDINS220	2	8940715	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	5249097	8940715	234258658	185	51772											
ITSN2	50618	broad.mit.edu	37	chr2	24531428	24531432	+	Intron	DEL	AGTGG	-	-													aattcaaatgacagttcttcAgtggaagtccacataaaaga							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24531432	-	-	24531428	6	5	48	0	1	1	0	1	0	0	0	0	7997	203	7	0		0	ITSN2	2	24531428	Intron	DEL	AGTGG	TCGA-17-Z015-01A-01W-0746-08	15590713	24531428	218667945	186	51773											
ITSN2	50618	broad.mit.edu	37	chr2	24531441	24531441	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcttcagtggaagtccacAtaaaagaccctttttcatgc	7	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24531441	T	T	24531441	1	4	48	0	1	0	0	0	0	0	0	0	7997	232	8	5		5	ITSN2	2	24531441	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	13	24531441	218667932	187	51774											
RBKS	64080	broad.mit.edu	37	chr2	28095803	28095803	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccagtaaaggcaaaacacTggcagggttgggaatgagca	15	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28095803	C	C	28095803	1	2	48	0	1	0	0	0	0	0	0	0	13216	1595	55	5		5	RBKS	2	28095803	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3564362	28095803	215103570	188	51775											
PLB1	151056	broad.mit.edu	37	chr2	28804980	28804980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaacattggaaaggccCtggacatcctccatgctgag	10	12	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28804980	A	A	28804980	3	1	48	1	0	0	0	0	1	0	0	0	12119	680	24	2	1739	2	PLB1	2	28804980	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	709177	28804980	214394393	189	51776											
LCLAT1	253558	broad.mit.edu	37	chr2	30841837	30841838	+	Intron	DEL	TG	-	-													tctggtaacaagtgctatcaTgtagatggtaacaagtctgg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30841838	-	-	30841837	6	5	48	0	1	1	0	1	0	0	0	0	8749	1479	51	0		0	LCLAT1	2	30841837	Intron	DEL	TG	TCGA-17-Z015-01A-01W-0746-08	2036857	30841837	212357536	190	51777											
XDH	7498	broad.mit.edu	37	chr2	31611315	31611315	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgcctgttgcccagagtgGaggcctccgctacattccct	10	16	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31611315	C	C	31611315	1	2	48	0	1	0	0	0	0	0	0	0	17553	1189	41	4		4	XDH	2	31611315	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	769478	31611315	211588058	191	51778											
SRD5A2	6716	broad.mit.edu	37	chr2	31762851	31762851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggtgctgaaaggtggggCcttttaggaggtgtttaggt	17	4	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31762851	A	A	31762851	1	1	48	0	1	0	0	0	0	0	0	0	15257	754	26	3		3	SRD5A2	2	31762851	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	151536	31762851	211436522	192	51779											
SLC30A6	55676	broad.mit.edu	37	chr2	32427238	32427238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactataaagcttctgaaagGttgaggggtaacatctctct	10	7	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32427238	T	T	32427238	1	4	48	0	1	0	0	0	0	0	0	0	14673	1276	44	3		3	SLC30A6	2	32427238	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	664387	32427238	210772135	193	51780											
LTBP1	4052	broad.mit.edu	37	chr2	33482545	33482545	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaggccctgaccttctccCgggaacacgggccaggagtg	15	13	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33482545	G	G	33482545	3	3	48	1	0	0	0	0	1	0	0	0	9160	643	23	4	2463	4	LTBP1	2	33482545	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1055307	33482545	209716828	194	51781											
CRIM1	51232	broad.mit.edu	37	chr2	36692029	36692029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatgtaatagcagattGcatgtagctgtcatactcag	10	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36692029	T	T	36692029	1	4	48	0	1	0	0	0	0	0	0	0	3905	1334	46	3		3	CRIM1	2	36692029	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3209484	36692029	206507344	195	51782											
SULT6B1	391365	broad.mit.edu	37	chr2	37414644	37414644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaataaaaactcattaCggagtcttgatataacaaaa	6	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37414644	A	A	37414644	1	1	48	0	1	0	0	0	0	0	0	0	15502	551	19	3		3	SULT6B1	2	37414644	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	722615	37414644	205784729	196	51783											
SOS1	6654	broad.mit.edu	37	chr2	39285804	39285804	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcaagaaggcagtagtTcagcattacctttaataaag	9	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39285804	C	C	39285804	1	2	48	0	1	0	0	0	0	0	0	0	15050	1798	62	5		5	SOS1	2	39285804	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1871160	39285804	203913569	197	51784											
SLC8A1	6546	broad.mit.edu	37	chr2	40392214	40392214	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taagaaagccaaggaggaagGaagccctaatgacctactaa	10	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40392214	T	T	40392214	1	4	48	0	1	0	0	0	0	0	0	0	14820	1189	41	3		3	SLC8A1	2	40392214	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1106410	40392214	202807159	198	51785											
SLC8A1	6546	broad.mit.edu	37	chr2	40605837	40605837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaggaatgagtcagacaCatggagagaagtagaggtca	14	4	2	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40605837	A	A	40605837	1	1	48	0	1	0	0	0	0	0	0	0	14820	493	17	3		3	SLC8A1	2	40605837	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	213623	40605837	202593536	199	51786											
MTA3	57504	broad.mit.edu	37	chr2	42883408	42883408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccaaatagcccacttacgGatcgacagattgaccagttt	7	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42883408	T	T	42883408	3	4	48	1	0	0	0	0	1	0	0	0	10004	1174	41	3	594	3	MTA3	2	42883408	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2277571	42883408	200315965	200	51787											
ABCG5	64240	broad.mit.edu	37	chr2	44052164	44052164	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttgtcaaagagctgaccAgacaacagacgtagttagtg	10	7	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44052164	G	G	44052164	1	3	48	0	1	0	0	0	0	0	0	0	71	203	7	5		5	ABCG5	2	44052164	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1168756	44052164	199147209	201	51788											
ABCG8	64241	broad.mit.edu	37	chr2	44079549	44079549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctgacacccgcgtgggCaacatgtacgtgcgggggtt	16	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44079549	A	A	44079549	2	1	48	1	0	0	0	0	0	0	0	1	72	697	25	3		3	ABCG8	2	44079549	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	27385	44079549	199119824	202	51789											
EPAS1	2034	broad.mit.edu	37	chr2	46538024	46538025	+	Intron	INS	-	T	T													tgacaactgcgtgtttggccINStttttttttgagacggagtc					rs141655081	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46538025	T	T	46538024	6	5	48	0	1	1	1	0	0	0	0	0	5192	696	24	0		0	EPAS1	2	46538024	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	2458475	46538024	196661349	203	51790											
RHOQ	23433	broad.mit.edu	37	chr2	46803613	46803613	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttaatctttttttggTatgtgggaattaagtgggat	11	1	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46803613	C	C	46803613	1	2	48	0	1	0	0	0	0	0	0	0	13451	1653	57	5		5	RHOQ	2	46803613	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	265589	46803613	196395760	204	51791											
NRXN1	9378	broad.mit.edu	37	chr2	50280583	50280583	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcacatttcccactatggcGatgttggcatcgttttcggc	9	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50280583	T	T	50280583	2	4	48	1	0	0	0	0	0	0	0	1	10760	1048	37	3		3	NRXN1	2	50280583	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3476970	50280583	192918790	205	51792											
SPTBN1	6711	broad.mit.edu	37	chr2	54843381	54843381	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaactgaagacaacaaagAgaagaaatctgccaaggatg	11	6	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54843381	G	G	54843381	3	3	48	1	0	0	0	0	1	0	0	0	15237	304	11	5	639	5	SPTBN1	2	54843381	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4562798	54843381	188355992	206	51793											
C2orf63	130162	broad.mit.edu	37	chr2	55436623	55436623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttacccatgaactaagtGcctgtgaaattatctgcagt	7	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55436623	T	T	55436623	3	4	48	1	0	0	0	0	1	0	0	0	2204	1319	46	3	1057	3	C2orf63	2	55436623	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	593242	55436623	187762750	207	51794											
CCDC85A	114800	broad.mit.edu	37	chr2	56491041	56491041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcattccctaggtcagGggtgtccagtcttttggctt	10	11	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56491041	T	T	56491041	1	4	48	0	1	0	0	0	0	0	0	0	2887	1247	43	2		2	CCDC85A	2	56491041	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1054418	56491041	186708332	208	51795											
MEIS1	4211	broad.mit.edu	37	chr2	66669970	66669970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaggggggtggattgcaCttgtcaatgtcatttatgca	12	7	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66669970	A	A	66669970	1	1	48	0	1	0	0	0	0	0	0	0	9560	580	20	3		3	MEIS1	2	66669970	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	10178929	66669970	176529403	209	51796											
PLEK	5341	broad.mit.edu	37	chr2	68607711	68607711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggtgctccttgggctgGtccctctcaccaccacccac	11	17	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68607711	T	T	68607711	1	4	48	0	1	0	0	0	0	0	0	0	12148	1276	44	3		3	PLEK	2	68607711	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1937741	68607711	174591662	210	51797											
ARHGAP25	9938	broad.mit.edu	37	chr2	69040776	69040776	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaattggaccataatcaaatActgctagatcacattaaaag	6	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69040776	T	T	69040776	1	4	48	0	1	0	0	0	0	0	0	0	876	406	14	5		5	ARHGAP25	2	69040776	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	433065	69040776	174158597	211	51798											
ADD2	119	broad.mit.edu	37	chr2	70901940	70901940	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcgtctcccttggacatCagctggctctctgtagactg	9	14	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70901940	A	A	70901940	2	1	48	1	0	0	0	0	0	0	0	1	305	813	29	3		3	ADD2	2	70901940	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1861164	70901940	172297433	212	51799											
ADD2	119	broad.mit.edu	37	chr2	70903899	70903899	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaggcaaacacgtttccCcgccagtcaggggcagcctc	11	16	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70903899	T	T	70903899	1	4	48	0	1	0	0	0	0	0	0	0	305	623	22	4		4	ADD2	2	70903899	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1959	70903899	172295474	213	51800											
CCT7	10574	broad.mit.edu	37	chr2	73467575	73467575	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttaaggcaaagcaacAatttctaatgatggggccac	8	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73467575	C	C	73467575	2	2	48	1	0	0	0	0	0	0	0	1	2989	117	5	5		5	CCT7	2	73467575	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2563676	73467575	169731798	214	51801											
SLC4A5	57835	broad.mit.edu	37	chr2	74481740	74481740	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtacaagcttctggttaccActtacatcatctaccatgag	6	11	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74481740	G	G	74481740	1	3	48	0	1	0	0	0	0	0	0	0	14771	174	6	5		5	SLC4A5	2	74481740	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1014165	74481740	168717633	215	51802											
LOXL3	84695	broad.mit.edu	37	chr2	74762948	74762948	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtagtgggagtctctaacaGatgtggctgaagcgtgactc	15	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74762948	T	T	74762948	1	4	48	0	1	0	0	0	0	0	0	0	8988	957	33	3		3	LOXL3	2	74762948	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	281208	74762948	168436425	216	51803											
TACR1	6869	broad.mit.edu	37	chr2	75322461	75322461	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catattttggtcagccttcaGgtaatcagccagagatgcta	9	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75322461	A	A	75322461	1	1	48	0	1	0	0	0	0	0	0	0	15624	1015	35	4		4	TACR1	2	75322461	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	559513	75322461	167876912	217	51804											
TACR1	6869	broad.mit.edu	37	chr2	75350575	75350575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttacgggggattgcacCagcgtattggcactgtaact	14	9	0	0	rs115749547	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75350575	A	A	75350575	1	1	48	0	1	0	0	0	0	0	0	0	15624	609	21	2		2	TACR1	2	75350575	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	28114	75350575	167848798	218	51805											
LRRTM4	80059	broad.mit.edu	37	chr2	76975739	76975739	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgagcttgctcgattgcgcGattgtggacacccattctcc	10	12	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76975739	C	C	76975739	1	2	48	0	1	0	0	0	0	0	0	0	9129	1073	37	4		4	LRRTM4	2	76975739	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1625164	76975739	166223634	219	51806											
RMND5A	64795	broad.mit.edu	37	chr2	87049387	87049387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagatgatatctgtttcaGgtaagagtcatgatgacctc	9	6	3	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87049387	T	T	87049387	1	4	48	0	1	0	0	0	0	0	0	0	13508	1015	35	2		2	RMND5A	2	87049387	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	10073648	87049387	156149986	220	51807											
CD8B	926	broad.mit.edu	37	chr2	87085255	87085255	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaagtagatgccactgtCttccggcttcacgcttgtga	11	11	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87085255	T	T	87085255	3	4	48	1	0	0	0	0	1	0	0	0	3075	913	32	4	598	4	CD8B	2	87085255	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	35868	87085255	156114118	221	51808											
RMND5A	64795	broad.mit.edu	37	chr2	87414191	87414191	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttataaaacttaagaatgggCcatagtagtgctatacaatt	7	5	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87414191	T	T	87414191	1	4	48	0	1	0	0	0	0	0	0	0	13508	754	26	4		4	RMND5A	2	87414191	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	328936	87414191	155785182	222	51809											
SMYD1	150572	broad.mit.edu	37	chr2	88367253	88367253	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agggcccagtagctgagagcGagtagggaaggggaggtggc	21	6	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88367253	C	C	88367253	1	2	48	0	1	0	0	0	0	0	0	0	14935	1073	37	4		4	SMYD1	2	88367253	5'Flank	SNP	G	TCGA-17-Z015-01A-01W-0746-08	953062	88367253	154832120	223	51810											
ZNF2	7549	broad.mit.edu	37	chr2	95841833	95841833	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttgtaaggtattgaggatGacatatccccctggtatgtg	11	6	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95841833	T	T	95841833	1	4	48	0	1	0	0	0	0	0	0	0	17886	1305	45	3		3	ZNF2	2	95841833	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	7474580	95841833	147357540	224	51811											
ZNF2	7549	broad.mit.edu	37	chr2	95843205	95843205	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagaaggattaagagtaagGgagaatgtgattgtattttc	13	1	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95843205	C	C	95843205	1	2	48	0	1	0	0	0	0	0	0	0	17886	1247	43	4		4	ZNF2	2	95843205	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1372	95843205	147356168	225	51812											
TRIM43	129868	broad.mit.edu	37	chr2	96262129	96262129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaacacttgaaagaaatGtatcaggaactaatggaaat	8	4	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96262129	T	T	96262129	3	4	48	1	0	0	0	0	1	0	0	0	16642	1377	48	3	697	3	TRIM43	2	96262129	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	418924	96262129	146937244	226	51813											
ANKRD36	375248	broad.mit.edu	37	chr2	97834529	97834529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaggacatgaactcatcCttttttatggctgcatagta	8	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97834529	A	A	97834529	1	1	48	0	1	0	0	0	0	0	0	0	665	696	24	2		2	ANKRD36	2	97834529	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1572400	97834529	145364844	227	51814											
CLASP1	23332	broad.mit.edu	37	chr2	122215209	122215209	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggaaggagatttggaatTtgttttggtttttaaacaat	10	2	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122215209	A	A	122215209	1	1	48	0	1	0	0	0	0	0	0	0	3485	1856	64	5		5	CLASP1	2	122215209	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	24380680	122215209	120984164	228	51815											
CNTNAP5	129684	broad.mit.edu	37	chr2	125545129	125545129	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggataaatttctatggatGtagcaagtgaatgtcataca	9	4	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125545129	A	A	125545129	1	1	48	0	1	0	0	0	0	0	0	0	3682	1392	48	4		4	CNTNAP5	2	125545129	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3329920	125545129	117654244	229	51816											
CNTNAP5	129684	broad.mit.edu	37	chr2	125655018	125655018	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatcaaacatggagctgtgtCtaggtggccaataattagat	10	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125655018	T	T	125655018	1	4	48	0	1	0	0	0	0	0	0	0	3682	928	32	4		4	CNTNAP5	2	125655018	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	109889	125655018	117544355	230	51817											
GYPC	2995	broad.mit.edu	37	chr2	127447686	127447686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacccctgctaggagtcGgtgggtgcaccacactgtct	13	13	1	0	rs55988600		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127447686	A	A	127447686	1	1	48	0	1	0	0	0	0	0	0	0	6975	1131	39	4		4	GYPC	2	127447686	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1792668	127447686	115751687	231	51818											
MAP3K2	10746	broad.mit.edu	37	chr2	128087548	128087548	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaatactgtattatccaAatcttctagtgatggcaatg	6	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128087548	C	C	128087548	3	2	48	1	0	0	0	0	1	0	0	0	9342	11	1	5	1488	5	MAP3K2	2	128087548	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	639862	128087548	115111825	232	51819											
MAP3K2	10746	broad.mit.edu	37	chr2	128096651	128096651	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagttttgaaacaacacatAcatagaattgtaattgtgac	7	5	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128096651	C	C	128096651	1	2	48	0	1	0	0	0	0	0	0	0	9342	406	14	5		5	MAP3K2	2	128096651	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	9103	128096651	115102722	233	51820											
FAM168B	130074	broad.mit.edu	37	chr2	131829603	131829603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgctcttaccttcttccCcagaactccacagacttaag	4	16	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131829603	A	A	131829603	1	1	48	0	1	0	0	0	0	0	0	0	5531	638	22	2		2	FAM168B	2	131829603	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3732952	131829603	111369770	234	51821											
POTEE	445582	broad.mit.edu	37	chr2	132010918	132010918	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcttctcttttcagtgaaCttttattttagcttcggggt	7	7	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132010918	G	G	132010918	1	3	48	0	1	0	0	0	0	0	0	0	12360	580	20	4		4	POTEE	2	132010918	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	181315	132010918	111188455	235	51822											
POTEE	445582	broad.mit.edu	37	chr2	132021524	132021524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttcaacaccccagccatGtacgtggccatccaggccgt	8	17	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132021524	T	T	132021524	3	4	48	1	0	0	0	0	1	0	0	0	12360	1377	48	3	2554	3	POTEE	2	132021524	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	10606	132021524	111177849	236	51823											
PLEKHB2	55041	broad.mit.edu	37	chr2	132022463	132022463	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaaagttctacaatgttgCcaaggactttgattgtacat	7	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132022463	G	G	132022463	1	3	48	0	1	0	0	0	0	0	0	0	12160	754	26	4		4	PLEKHB2	2	132022463	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	939	132022463	111176910	237	51824											
PLEKHB2	55041	broad.mit.edu	37	chr2	132044842	132044842	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccctgcagtgggagcaGgggccctttgcacatcctag	12	13	1	0	rs142852781	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132044842	A	A	132044842	1	1	48	0	1	0	0	0	0	0	0	0	12160	1015	35	4		4	PLEKHB2	2	132044842	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	22379	132044842	111154531	238	51825											
MGAT5	4249	broad.mit.edu	37	chr2	135075488	135075488	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccagcaagtgatccttgaAggaccaatgacaaggaactg	10	10	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135075488	T	T	135075488	1	4	48	0	1	0	0	0	0	0	0	0	9641	87	3	5		5	MGAT5	2	135075488	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3030646	135075488	108123885	239	51826											
THSD7B	80731	broad.mit.edu	37	chr2	138169324	138169324	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcagaagggagcctcaCcgaggactgcgggtacaagc	16	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138169324	G	G	138169324	3	3	48	1	0	0	0	0	1	0	0	0	16003	506	18	4	2798	4	THSD7B	2	138169324	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3093836	138169324	105030049	240	51827											
LRP1B	53353	broad.mit.edu	37	chr2	141812825	141812825	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgacttcacatgcatggcttCtgactacaacaaataaaaaa	5	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141812825	A	A	141812825	3	1	48	1	0	0	0	0	1	0	0	0	9042	913	32	3	12715	3	LRP1B	2	141812825	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3643501	141812825	101386548	241	51828											
ARHGAP15	55843	broad.mit.edu	37	chr2	143973045	143973045	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaagacatggtcatggtgGactatttcagctagggggat	14	5	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143973045	T	T	143973045	1	4	48	0	1	0	0	0	0	0	0	0	868	1189	41	3		3	ARHGAP15	2	143973045	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2160220	143973045	99226328	242	51829											
MBD5	55777	broad.mit.edu	37	chr2	149270532	149270532	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagactactccactaatgcGcagtgtttattaaaggaaca	8	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149270532	T	T	149270532	1	4	48	0	1	0	0	0	0	0	0	0	9440	1102	38	3		3	MBD5	2	149270532	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5297487	149270532	93928841	243	51830											
NEB	4703	broad.mit.edu	37	chr2	152496381	152496382	+	Intron	INS	-	A	A													aagtctcaccttgttcatagINStgatggcattatttttggcc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152496382	A	A	152496381	6	5	48	0	1	1	1	0	0	0	0	0	10397	1029	36	0		0	NEB	2	152496381	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	3225849	152496381	90702992	244	51831											
NEB	4703	broad.mit.edu	37	chr2	152522011	152522011	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactctatgggcacccagcCgatccctttcatccaattgg	9	14	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152522011	T	T	152522011	3	4	48	1	0	0	0	0	1	0	0	0	10397	652	23	4	21176	4	NEB	2	152522011	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	25630	152522011	90677362	245	51832											
NEB	4703	broad.mit.edu	37	chr2	152541305	152541305	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactcacatcgctctgcagcGcatatgccttcttggcaagg	9	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152541305	A	A	152541305	3	1	48	1	0	0	0	0	1	0	0	0	10397	1087	38	4	23484	4	NEB	2	152541305	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	19294	152541305	90658068	246	51833											
CACNB4	785	broad.mit.edu	37	chr2	152830089	152830089	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctgctccatgttccctgCgttgcctaagaaataagaag	8	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152830089	T	T	152830089	1	4	48	0	1	0	0	0	0	0	0	0	2581	783	27	4		4	CACNB4	2	152830089	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	288784	152830089	90369284	247	51834											
FMNL2	114793	broad.mit.edu	37	chr2	153259323	153259323	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatggtatgtttatcacacTtaatgagccaatacagttac	7	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153259323	G	G	153259323	1	3	48	0	1	0	0	0	0	0	0	0	6010	1624	56	5		5	FMNL2	2	153259323	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	429234	153259323	89940050	248	51835											
GALNT13	114805	broad.mit.edu	37	chr2	154875932	154875932	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggcaggtgaatcatgaGgtcaagagatcaagaccatc	11	9	3	4	rs147743324	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154875932	A	A	154875932	1	1	48	0	1	0	0	0	0	0	0	0	6273	1015	35	4		4	GALNT13	2	154875932	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1616609	154875932	88323441	249	51836											
GALNT13	114805	broad.mit.edu	37	chr2	155115588	155115588	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacagaaactactttgaagaGataggaacttacgatgcagg	11	6	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155115588	T	T	155115588	3	4	48	1	0	0	0	0	1	0	0	0	6273	933	33	3	934	3	GALNT13	2	155115588	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	239656	155115588	88083785	250	51837											
CYTIP	9595	broad.mit.edu	37	chr2	158291002	158291002	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacatttggcacagatctAtcattaaaaataactgtcac	4	9	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158291002	G	G	158291002	1	3	48	0	1	0	0	0	0	0	0	0	4240	464	16	5		5	CYTIP	2	158291002	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3175414	158291002	84908371	251	51838											
CCDC148	130940	broad.mit.edu	37	chr2	159281742	159281742	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacaggtgtatgcagactAtagtggccaagagagcactt	12	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159281742	G	G	159281742	1	3	48	0	1	0	0	0	0	0	0	0	2808	464	16	5		5	CCDC148	2	159281742	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	990740	159281742	83917631	252	51839											
PKP4	8502	broad.mit.edu	37	chr2	159488548	159488548	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctgttagaaggaaatcaTgttgcccatttggttgtcag	10	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159488548	C	C	159488548	1	2	48	0	1	0	0	0	0	0	0	0	12082	1479	51	5		5	PKP4	2	159488548	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	206806	159488548	83710825	253	51840											
TANC1	85461	broad.mit.edu	37	chr2	160031289	160031289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaaaggtctgcaaaccacAtaagtgaaggaaggaataaa	10	5	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160031289	G	G	160031289	1	3	48	0	1	0	0	0	0	0	0	0	15663	232	8	5		5	TANC1	2	160031289	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	542741	160031289	83168084	254	51841											
FAP	2191	broad.mit.edu	37	chr2	163037994	163037994	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccctggccagctcagtctCcctgtgtgcaccatgctctt	8	16	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163037994	A	A	163037994	1	1	48	0	1	0	0	0	0	0	0	0	5730	870	30	3		3	FAP	2	163037994	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3006705	163037994	80161379	255	51842											
KCNH7	90134	broad.mit.edu	37	chr2	163419840	163419840	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaagcagcaactgataagGgttttaagataagcaagcag	11	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163419840	C	C	163419840	1	2	48	0	1	0	0	0	0	0	0	0	8107	1247	43	4		4	KCNH7	2	163419840	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	381846	163419840	79779533	256	51843											
FIGN	55137	broad.mit.edu	37	chr2	164468385	164468385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcttaaagcttttccccCaatttcttttgttacctatt	2	11	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164468385	A	A	164468385	1	1	48	0	1	0	0	0	0	0	0	0	5948	609	21	2		2	FIGN	2	164468385	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1048545	164468385	78730988	257	51844											
SCN2A	6326	broad.mit.edu	37	chr2	166237055	166237055	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcactgatgtactttttgTgaaacaagtactagatataa	6	6	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166237055	A	A	166237055	1	1	48	0	1	0	0	0	0	0	0	0	14029	1711	59	5		5	SCN2A	2	166237055	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1768670	166237055	76962318	258	51845											
XIRP2	129446	broad.mit.edu	37	chr2	168099943	168099943	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatcagcggtaactatcAgtaaggacataactgggggg	13	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168099943	C	C	168099943	3	2	48	1	0	0	0	0	1	0	0	0	17557	188	7	5	2071	5	XIRP2	2	168099943	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1862888	168099943	75099430	259	51846											
STK39	27347	broad.mit.edu	37	chr2	168997079	168997079	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattctactaaaatgctagaTacaaatgaaatgttagcata	5	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168997079	A	A	168997079	1	1	48	0	1	0	0	0	0	0	0	0	15423	1421	49	5		5	STK39	2	168997079	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	897136	168997079	74202294	260	51847											
MYO3B	140469	broad.mit.edu	37	chr2	171240417	171240417	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcctgaaacctttccaTtccggttgctggtgctgacc	9	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171240417	C	C	171240417	1	2	48	0	1	0	0	0	0	0	0	0	10171	1508	52	5		5	MYO3B	2	171240417	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2243338	171240417	71958956	261	51848											
RAPGEF4	11069	broad.mit.edu	37	chr2	173832214	173832214	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccctccaggtcccaaggcCgcctagtgcatagacatacc	8	17	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173832214	G	G	173832214	1	3	48	0	1	0	0	0	0	0	0	0	13154	667	23	4		4	RAPGEF4	2	173832214	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2591797	173832214	69367159	262	51849											
EVX2	344191	broad.mit.edu	37	chr2	176948324	176948324	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggggagttctcccagagCgctgtgcaggggggcagacg	20	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176948324	T	T	176948324	3	4	48	1	0	0	0	0	1	0	0	0	5337	768	27	4	1259	4	EVX2	2	176948324	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3116110	176948324	66251049	263	51850											
HOXD3	3232	broad.mit.edu	37	chr2	177033966	177033966	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaactacggacacttacGgctacagcaccccccaccag	7	17	0	0	rs138422926	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177033966	A	A	177033966	3	1	48	1	0	0	0	0	1	0	0	0	7390	1116	39	4	126	4	HOXD3	2	177033966	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	85642	177033966	66165407	264	51851											
NFE2L2	4780	broad.mit.edu	37	chr2	178096096	178096096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcacgtgagtgctctgcCcctgagatggtgacaagggt	14	10	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178096096	A	A	178096096	3	1	48	1	0	0	0	0	1	0	0	0	10463	623	22	2	586	2	NFE2L2	2	178096096	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1062130	178096096	65103277	265	51852											
PDE11A	50940	broad.mit.edu	37	chr2	178862195	178862195	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgtgctcttacaagaaggAggaatgtggaagagatcctt	12	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178862195	T	T	178862195	1	4	48	0	1	0	0	0	0	0	0	0	11725	319	11	5		5	PDE11A	2	178862195	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	766099	178862195	64337178	266	51853											
TTN	7273	broad.mit.edu	37	chr2	179530287	179530287	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttatggctaaaaagatgaTtcctttaaagaatctgagga	8	4	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179530287	G	G	179530287	1	3	48	0	1	0	0	0	0	0	0	0	16861	1508	52	5		5	TTN	2	179530287	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	668092	179530287	63669086	267	51854											
TTN	7273	broad.mit.edu	37	chr2	179586471	179586471	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atacacaaattctaacatgtCcagttagtttctctcaaaca	3	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179586471	T	T	179586471	1	4	48	0	1	0	0	0	0	0	0	0	16861	870	30	4		4	TTN	2	179586471	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	56184	179586471	63612902	268	51855											
TTN	7273	broad.mit.edu	37	chr2	179658028	179658028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcttattagtatgctaaCaaccatgtggcccaaggaac	9	9	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179658028	A	A	179658028	1	1	48	0	1	0	0	0	0	0	0	0	16861	493	17	3		3	TTN	2	179658028	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	71557	179658028	63541345	269	51856											
CERKL	375298	broad.mit.edu	37	chr2	182514868	182514868	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggaaggaaggaaGgaaggaaggaaggaaggaag	21	0	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182514868	A	A	182514868	1	1	48	0	1	0	0	0	0	0	0	0	3298	1015	35	4		4	CERKL	2	182514868	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2856840	182514868	60684505	270	51857											
PPP1R1C	151242	broad.mit.edu	37	chr2	182907614	182907614	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacagaaaatgagatatgttCggtcaactagagatgattgt	10	4	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182907614	G	G	182907614	1	3	48	0	1	0	0	0	0	0	0	0	12470	899	31	4		4	PPP1R1C	2	182907614	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	392746	182907614	60291759	271	51858											
ITGAV	3685	broad.mit.edu	37	chr2	187529044	187529044	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattgagagaagcattcgAtttgcacccagtgtgctatt	9	7	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187529044	G	G	187529044	1	3	48	0	1	0	0	0	0	0	0	0	7958	348	12	5		5	ITGAV	2	187529044	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4621430	187529044	55670329	272	51859											
COL5A2	1290	broad.mit.edu	37	chr2	189957113	189957113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgaccaggaacacctgGttctccatcaattccctgag	9	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189957113	T	T	189957113	3	4	48	1	0	0	0	0	1	0	0	0	3729	1261	44	3	4201	3	COL5A2	2	189957113	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2428069	189957113	53242260	273	51860											
GLS	2744	broad.mit.edu	37	chr2	191819686	191819686	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaataaaccttgtttctActagataggtaattctgtct	7	7	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191819686	C	C	191819686	1	2	48	0	1	0	0	0	0	0	0	0	6527	406	14	5		5	GLS	2	191819686	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1862573	191819686	51379687	274	51861											
HSPD1	3329	broad.mit.edu	37	chr2	198358265	198358265	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacaaaaaatgactgcaatAcatttaaatgaaaagcgaaa	5	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198358265	G	G	198358265	1	3	48	0	1	0	0	0	0	0	0	0	7498	406	14	5		5	HSPD1	2	198358265	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	6538579	198358265	44841108	275	51862											
RFTN2	130132	broad.mit.edu	37	chr2	198498522	198498522	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactttcatgatgaagttctTcctcaattccgctttcagat	5	11	4	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198498522	A	A	198498522	3	1	48	1	0	0	0	0	1	0	0	0	13367	1783	62	5	891	5	RFTN2	2	198498522	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	140257	198498522	44700851	276	51863											
PLCL1	5334	broad.mit.edu	37	chr2	198956915	198956915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctcccaacctcaccagCttgtcccagtctcacctgca	5	20	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198956915	A	A	198956915	1	1	48	0	1	0	0	0	0	0	0	0	12134	812	28	3		3	PLCL1	2	198956915	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	458393	198956915	44242458	277	51864											
TRAK2	66008	broad.mit.edu	37	chr2	202254176	202254176	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgagatagagcggcccCgtgtgtcattggcaatcctg	14	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202254176	G	G	202254176	3	3	48	1	0	0	0	0	1	0	0	0	16574	652	23	4	1520	4	TRAK2	2	202254176	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3297261	202254176	40945197	278	51865											
ALS2CR8	79800	broad.mit.edu	37	chr2	203831748	203831748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatgggccaagaagaaaaGgtttccagttaaaaaaagtc	10	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203831748	T	T	203831748	3	4	48	1	0	0	0	0	1	0	0	0	555	1000	35	2	906	2	ALS2CR8	2	203831748	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1577572	203831748	39367625	279	51866											
NRP2	8828	broad.mit.edu	37	chr2	206628157	206628157	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaagagatggaaaggaaatGataccgagaaataggcagga	14	3	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206628157	T	T	206628157	1	4	48	0	1	0	0	0	0	0	0	0	10756	1305	45	3		3	NRP2	2	206628157	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2796409	206628157	36571216	280	51867											
CPS1	1373	broad.mit.edu	37	chr2	211465284	211465284	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggttcttctttaggagtgGaactattcaagagaggtgtg	13	4	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211465284	C	C	211465284	3	2	48	1	0	0	0	0	1	0	0	0	3855	1175	41	4	1635	4	CPS1	2	211465284	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4837127	211465284	31734089	281	51868											
CPS1	1373	broad.mit.edu	37	chr2	211528397	211528397	+	Intron	DEL	C	-	-													tttaggactacttttaacctCctggggattatctaaaaact					rs3217218		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	211528397	-	-	211528397	6	5	48	0	1	1	0	1	0	0	0	0	3855	870	30	0		0	CPS1	2	211528397	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	63113	211528397	31670976	282	51869											
SPAG16	79582	broad.mit.edu	37	chr2	214878642	214878642	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatagacagcatagatactAactcctaaaattcttaattt	4	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214878642	G	G	214878642	1	3	48	0	1	0	0	0	0	0	0	0	15094	377	13	5		5	SPAG16	2	214878642	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3350245	214878642	28320731	283	51870											
ABCA12	26154	broad.mit.edu	37	chr2	215843639	215843639	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagactttggtgctgaaTggaggaagtacataaacaag	12	6	0	2	rs35809021		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215843639	C	C	215843639	2	2	48	1	0	0	0	0	0	0	0	1	30	1451	51	5		5	ABCA12	2	215843639	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	964997	215843639	27355734	284	51871											
CCDC108	255101	broad.mit.edu	37	chr2	219892638	219892638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctctacactgatgggcgGggggaagatggttatgtcgc	17	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219892638	A	A	219892638	3	1	48	1	0	0	0	0	1	0	0	0	2769	1232	43	4	3924	4	CCDC108	2	219892638	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4048999	219892638	23306735	285	51872											
SERPINE2	5270	broad.mit.edu	37	chr2	224866368	224866368	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacacgcaccatttacgcCgtatctcatcaccatggcga	7	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224866368	T	T	224866368	3	4	48	1	0	0	0	0	1	0	0	0	14225	652	23	4	978	4	SERPINE2	2	224866368	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4973730	224866368	18333005	286	51873											
DOCK10	55619	broad.mit.edu	37	chr2	225658116	225658116	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcatgtggtcatcttaCcctttcttttcagatactct	4	13	6	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225658116	A	A	225658116	5	1	48	1	0	0	0	0	0	0	1	0	4725	521	18	3	1391	3	DOCK10	2	225658116	Splice_Site	SNP	C	TCGA-17-Z015-01A-01W-0746-08	791748	225658116	17541257	287	51874											
DNER	92737	broad.mit.edu	37	chr2	230456283	230456283	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtaaaaatgcacatgatAtaacgttctcacctccactt	4	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230456283	G	G	230456283	1	3	48	0	1	0	0	0	0	0	0	0	4707	464	16	5		5	DNER	2	230456283	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4798167	230456283	12743090	288	51875											
CHRND	1144	broad.mit.edu	37	chr2	233394818	233394818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgctcatctccttcatGgtcaacctggtcttctacct	7	14	6	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233394818	T	T	233394818	3	4	48	1	0	0	0	0	1	0	0	0	3425	1348	47	2	815	2	CHRND	2	233394818	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2938535	233394818	9804555	289	51876											
TRPM8	79054	broad.mit.edu	37	chr2	234863911	234863911	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggtaagcacgaagctctCctgggttattccagtgttgg	14	8	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234863911	T	T	234863911	1	4	48	0	1	0	0	0	0	0	0	0	16717	870	30	4		4	TRPM8	2	234863911	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1469093	234863911	8335462	290	51877											
TRPM8	79054	broad.mit.edu	37	chr2	234873364	234873364	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaatgctgctggggagtcCgaggagctggctaatgagta	15	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234873364	T	T	234873364	2	4	48	1	0	0	0	0	0	0	0	1	16717	639	23	4		4	TRPM8	2	234873364	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9453	234873364	8326009	291	51878											
TRPM8	79054	broad.mit.edu	37	chr2	234878399	234878399	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccaagaactggaagattAtcctgtgtctgtttattata	7	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234878399	T	T	234878399	3	4	48	1	0	0	0	0	1	0	0	0	16717	449	16	5	2144	5	TRPM8	2	234878399	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	5035	234878399	8320974	292	51879											
TRPM8	79054	broad.mit.edu	37	chr2	234891489	234891489	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagcaaaaatgcatcaaacCggttttaactctggaagata	7	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234891489	T	T	234891489	1	4	48	0	1	0	0	0	0	0	0	0	16717	667	23	4		4	TRPM8	2	234891489	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	13090	234891489	8307884	293	51880											
ATG4B	23192	broad.mit.edu	37	chr2	242594615	242594616	+	Intron	DNP	GG	TT	TT													cttcctgtgacgtgtctcctGgcaccacgtgccaccagagg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	242594616	TT	TT	242594615	1	4	48	0	1	0	0	0	0	0	0	0	1101	1363	47	2		2	ATG4B	2	242594615	Intron	DNP	GG	TCGA-17-Z015-01A-01W-0746-08	7703126	242594615	604758	294	51881											
CNTN4	152330	broad.mit.edu	37	chr3	2778014	2778014	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagttaaaggaaatccaaaAcctcatatcaggtttgttga	8	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2778014	T	T	2778014	3	4	48	1	0	0	0	0	1	0	0	0	3675	40	2	5	177	5	CNTN4	3	2778014	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08		2778014	195244416	295	51882											
IL5RA	3568	broad.mit.edu	37	chr3	3143587	3143587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctattttaatcaaatatGcattttcttctactttttaa	3	6	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3143587	T	T	3143587	1	4	48	0	1	0	0	0	0	0	0	0	7770	1334	46	3		3	IL5RA	3	3143587	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	365573	3143587	194878843	296	51883											
CAV3	859	broad.mit.edu	37	chr3	8787364	8787364	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactggccctgctctggggCttcctgttcgcctgcatctc	10	17	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8787364	A	A	8787364	2	1	48	1	0	0	0	0	0	0	0	1	2721	784	28	3		3	CAV3	3	8787364	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5643777	8787364	189235066	297	51884											
SLC6A11	6538	broad.mit.edu	37	chr3	10905396	10905396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagagaagaggaaaggacCttcctttcctcatctccact	9	11	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10905396	A	A	10905396	1	1	48	0	1	0	0	0	0	0	0	0	14788	696	24	2		2	SLC6A11	3	10905396	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2118032	10905396	187117034	298	51885											
SYN2	6854	broad.mit.edu	37	chr3	12089792	12089792	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcctcccacctcagcctccCgagtagctgggacgacgggt	11	16	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12089792	G	G	12089792	1	3	48	0	1	0	0	0	0	0	0	0	15560	667	23	4		4	SYN2	3	12089792	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1184396	12089792	185932638	299	51886											
LSM3	27258	broad.mit.edu	37	chr3	14220343	14220343	+	5'UTR	DEL	G	-	-													ttctcgcgagaggcgggaaaGggcgcagggtttgaaacatg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14220343	-	-	14220343	6	5	48	0	1	1	0	1	0	0	0	0	9144	1015	35	0		0	LSM3	3	14220343	5'UTR	DEL	G	TCGA-17-Z015-01A-01W-0746-08	2130551	14220343	183802087	300	51887											
UBE2E2	7325	broad.mit.edu	37	chr3	23309482	23309482	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagatgcagaaaaggcctttGacaaaattcaacaactcttc	6	10	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23309482	C	C	23309482	1	2	48	0	1	0	0	0	0	0	0	0	16979	1305	45	4		4	UBE2E2	3	23309482	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	9089139	23309482	174712948	301	51888											
STT3B	201595	broad.mit.edu	37	chr3	31641905	31641905	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcttattccactgcatgtAtttgtgttgttactgatgca	7	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31641905	T	T	31641905	2	4	48	1	0	0	0	0	0	0	0	1	15452	436	16	5		5	STT3B	3	31641905	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	8332423	31641905	166380525	302	51889											
STT3B	201595	broad.mit.edu	37	chr3	31659275	31659275	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccttattttttctgactGccaactgtctgaaataggtt	6	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31659275	A	A	31659275	1	1	48	0	1	0	0	0	0	0	0	0	15452	1334	46	4		4	STT3B	3	31659275	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	17370	31659275	166363155	303	51890											
CLASP2	23122	broad.mit.edu	37	chr3	33540177	33540177	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcctccagaacctgtttgTgcacgtttgatgtaaagatt	9	9	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33540177	G	G	33540177	2	3	48	1	0	0	0	0	0	0	0	1	3486	1683	59	5		5	CLASP2	3	33540177	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1880902	33540177	164482253	304	51891											
ARPP21	10777	broad.mit.edu	37	chr3	35729197	35729197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagacagagatgattaaacCtggccctaaattattatatt	6	8	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35729197	A	A	35729197	1	1	48	0	1	0	0	0	0	0	0	0	982	696	24	2		2	ARPP21	3	35729197	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2189020	35729197	162293233	305	51892											
ARPP21	10777	broad.mit.edu	37	chr3	35750437	35750437	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacgcaacttggataacccTcctgatttcttttttctgtt	5	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35750437	C	C	35750437	1	2	48	0	1	0	0	0	0	0	0	0	982	1566	54	5		5	ARPP21	3	35750437	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	21240	35750437	162271993	306	51893											
VILL	50853	broad.mit.edu	37	chr3	38044811	38044811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaacaagaggtaacaGggttgggaggagagtgttct	15	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38044811	T	T	38044811	1	4	48	0	1	0	0	0	0	0	0	0	17292	1015	35	2		2	VILL	3	38044811	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2294374	38044811	159977619	307	51894											
MYRIP	25924	broad.mit.edu	37	chr3	40299730	40299730	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccttgacccaacagccatCgagtactgtatgtatttcca	7	12	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40299730	G	G	40299730	1	3	48	0	1	0	0	0	0	0	0	0	10194	899	31	4		4	MYRIP	3	40299730	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2254919	40299730	157722700	308	51895											
CTNNB1	1499	broad.mit.edu	37	chr3	41268677	41268678	+	Intron	DEL	AT	-	-													aagattccttgactaacaagAtatatatatatatctttcta							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41268678	-	-	41268677	6	5	48	0	1	1	0	1	0	0	0	0	4050	348	12	0		0	CTNNB1	3	41268677	Intron	DEL	AT	TCGA-17-Z015-01A-01W-0746-08	968947	41268677	156753753	309	51896											
CCDC13	152206	broad.mit.edu	37	chr3	42784550	42784550	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctcaagctcttgaacCtgaggatggtaaaactcgtc	9	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42784550	A	A	42784550	5	1	48	1	0	0	0	0	0	0	1	0	2791	695	24	2	1358	2	CCDC13	3	42784550	Splice_Site	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1515873	42784550	155237880	310	51897											
LZTFL1	54585	broad.mit.edu	37	chr3	45869894	45869894	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactgtgtgcattaatcatgCattaacagacaaatccctta	5	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45869894	T	T	45869894	1	4	48	0	1	0	0	0	0	0	0	0	9224	725	25	4		4	LZTFL1	3	45869894	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3085344	45869894	152152536	311	51898											
CAMP	820	broad.mit.edu	37	chr3	48265844	48265844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatttcctcctctgactagGatggggacccagacacgcca	9	15	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48265844	A	A	48265844	3	1	48	1	0	0	0	0	1	0	0	0	2636	1188	41	4	208	4	CAMP	3	48265844	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2395950	48265844	149756586	312	51899											
COL7A1	1294	broad.mit.edu	37	chr3	48609589	48609589	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcggccctggcagtcctcGgtcacctttggctccctgtt	11	16	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48609589	T	T	48609589	2	4	48	1	0	0	0	0	0	0	0	1	3736	1124	39	1		1	COL7A1	3	48609589	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	343745	48609589	149412841	313	51900											
COL7A1	1294	broad.mit.edu	37	chr3	48621469	48621469	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacctgtccctcacttaccCgctccccacgatcgcctttg	5	20	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48621469	G	G	48621469	3	3	48	1	0	0	0	0	1	0	0	0	3736	666	23	4	4939	4	COL7A1	3	48621469	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	11880	48621469	149400961	314	51901											
CAMKV	79012	broad.mit.edu	37	chr3	49899116	49899116	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggctgagcaaggcacaggGacctgggacgccaagggtcc	16	12	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49899116	T	T	49899116	1	4	48	0	1	0	0	0	0	0	0	0	2634	1189	41	3		3	CAMKV	3	49899116	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1277647	49899116	148123314	315	51902											
DOCK3	1795	broad.mit.edu	37	chr3	50824396	50824396	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtaaatggcatgtctttcAtgtgtgcaaccatgtgtttt	9	6	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50824396	T	T	50824396	1	4	48	0	1	0	0	0	0	0	0	0	4728	232	8	5		5	DOCK3	3	50824396	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	925280	50824396	147198034	316	51903											
VPRBP	9730	broad.mit.edu	37	chr3	51457152	51457152	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atttaaataaaagaatcattCcaattcccagggagtaagaa	6	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51457152	G	G	51457152	1	3	48	0	1	0	0	0	0	0	0	0	17312	870	30	4		4	VPRBP	3	51457152	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	632756	51457152	146565278	317	51904											
CACNA2D3	55799	broad.mit.edu	37	chr3	54537415	54537415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattatgtgagcagatcagGgtccacagtgtaagggatgg	15	5	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54537415	T	T	54537415	1	4	48	0	1	0	0	0	0	0	0	0	2576	1247	43	2		2	CACNA2D3	3	54537415	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3080263	54537415	143485015	318	51905											
FHIT	2272	broad.mit.edu	37	chr3	60814814	60814814	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactatgagccaagcgcagtGccaaactctagaaacaccat	7	12	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60814814	A	A	60814814	1	1	48	0	1	0	0	0	0	0	0	0	5934	1334	46	4		4	FHIT	3	60814814	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6277399	60814814	137207616	319	51906											
ATXN7	6314	broad.mit.edu	37	chr3	63976117	63976117	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagggcactgcaggggggCgcgccagggatcttggcatg	19	10	1	0	rs139396106	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63976117	T	T	63976117	1	4	48	0	1	0	0	0	0	0	0	0	1219	783	27	4		4	ATXN7	3	63976117	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3161303	63976117	134046313	320	51907											
KBTBD8	84541	broad.mit.edu	37	chr3	67053833	67053833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtatatgatcagtcatttgGacccacagaattctattggg	9	7	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67053833	T	T	67053833	3	4	48	1	0	0	0	0	1	0	0	0	8069	1174	41	3	452	3	KBTBD8	3	67053833	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3077716	67053833	130968597	321	51908											
FAM19A1	407738	broad.mit.edu	37	chr3	68119040	68119040	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtcacactgatgcaagAggtgggttcccatggtcttg	14	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68119040	G	G	68119040	1	3	48	0	1	0	0	0	0	0	0	0	5578	319	11	5		5	FAM19A1	3	68119040	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1065207	68119040	129903390	322	51909											
PROK2	60675	broad.mit.edu	37	chr3	71830633	71830634	+	Frame_Shift_Ins	INS	-	T	T													taactttacgagtcagtggaINStggcagctgtctcccagttt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71830634	T	T	71830633	7	5	48	1	0	1	1	0	0	0	0	0	12657	330	12	0	194	0	PROK2	3	71830633	Frame_Shift_Ins	INS	-	TCGA-17-Z015-01A-01W-0746-08	3711593	71830633	126191797	323	51910											
GBE1	2632	broad.mit.edu	37	chr3	81578932	81578932	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaattgatttttaaatgtCttgaggtagtattatttggg	11	1	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81578932	T	T	81578932	1	4	48	0	1	0	0	0	0	0	0	0	6332	928	32	4		4	GBE1	3	81578932	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9748299	81578932	116443498	324	51911											
EPHA6	285220	broad.mit.edu	37	chr3	97251372	97251372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaacatcattcgcctagaaGgggttgtcaccaaaagtaag	9	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97251372	A	A	97251372	3	1	48	1	0	0	0	0	1	0	0	0	5213	1000	35	4	2481	4	EPHA6	3	97251372	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	15672440	97251372	100771058	325	51912											
CCDC52	152185	broad.mit.edu	37	chr3	113212901	113212901	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaattgaatacctgtgCgcctacgaggaaacagctct	10	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113212901	T	T	113212901	3	4	48	1	0	0	0	0	1	0	0	0	2850	768	27	4	2243	4	CCDC52	3	113212901	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	15961529	113212901	84809529	326	51913											
CCDC52	152185	broad.mit.edu	37	chr3	113213060	113213060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatcgcaaaggaaaagacCataaaaaggcctggagcatg	10	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113213060	A	A	113213060	1	1	48	0	1	0	0	0	0	0	0	0	2850	609	21	2		2	CCDC52	3	113213060	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	159	113213060	84809370	327	51914											
LSAMP	4045	broad.mit.edu	37	chr3	115919135	115919135	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagggagaggaggaataatAactggcaagctataagaggt	14	4	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115919135	T	T	115919135	1	4	48	0	1	0	0	0	0	0	0	0	9135	377	13	5		5	LSAMP	3	115919135	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2706075	115919135	82103295	328	51915											
LSAMP	4045	broad.mit.edu	37	chr3	115987160	115987160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcatgtacaccacaaatGctcctctgcctggccaaccc	7	16	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115987160	T	T	115987160	1	4	48	0	1	0	0	0	0	0	0	0	9135	1334	46	3		3	LSAMP	3	115987160	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	68025	115987160	82035270	329	51916											
C3orf30	152405	broad.mit.edu	37	chr3	118870190	118870190	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttattgtaaaatacagcAcacatacagcaaagtgtata	5	7	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118870190	C	C	118870190	1	2	48	0	1	0	0	0	0	0	0	0	2242	174	6	5		5	C3orf30	3	118870190	3'UTR	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2883030	118870190	79152240	330	51917											
C3orf1	51300	broad.mit.edu	37	chr3	119232532	119232532	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaacgtaggcctgcgtggcCtggtggctggtggcataatt	15	8	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119232532	G	G	119232532	3	3	48	1	0	0	0	0	1	0	0	0	2228	680	24	4	580	4	C3orf1	3	119232532	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	362342	119232532	78789898	331	51918											
GPR156	165829	broad.mit.edu	37	chr3	119905559	119905559	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggatcagtcagcacccaCgtcatgagcaggatcacatc	10	12	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119905559	A	A	119905559	2	1	48	1	0	0	0	0	0	0	0	1	6726	523	19	3		3	GPR156	3	119905559	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	673027	119905559	78116871	332	51919											
GPR156	165829	broad.mit.edu	37	chr3	119935581	119935581	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatttagttcctacttAtaagtgagaacatgcagtat	6	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119935581	G	G	119935581	1	3	48	0	1	0	0	0	0	0	0	0	6726	464	16	5		5	GPR156	3	119935581	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	30022	119935581	78086849	333	51920											
SLC15A2	6565	broad.mit.edu	37	chr3	121658136	121658136	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagatcgtagaatgctgtAgttagaaatatttacttgag	9	3	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121658136	G	G	121658136	1	3	48	0	1	0	0	0	0	0	0	0	14512	435	15	5		5	SLC15A2	3	121658136	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1722555	121658136	76364294	334	51921											
CHCHD6	84303	broad.mit.edu	37	chr3	126449353	126449353	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggtgacctctgtgacttCgtggaccctggggtgccact	14	12	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126449353	T	T	126449353	1	4	48	0	1	0	0	0	0	0	0	0	3351	899	31	4		4	CHCHD6	3	126449353	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4791217	126449353	71573077	335	51922											
COL6A6	131873	broad.mit.edu	37	chr3	130279403	130279403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagtgagattaagggcgGtaagtcaaattctttgtaag	13	3	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130279403	T	T	130279403	1	4	48	0	1	0	0	0	0	0	0	0	3735	1276	44	3		3	COL6A6	3	130279403	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3830050	130279403	67743027	336	51923											
TOPBP1	11073	broad.mit.edu	37	chr3	133375796	133375796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacattttgctgttgacagTttgaatacataagtgttaca	7	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133375796	A	A	133375796	1	1	48	0	1	0	0	0	0	0	0	0	16493	1740	60	5		5	TOPBP1	3	133375796	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3096393	133375796	64646634	337	51924											
RAB6B	51560	broad.mit.edu	37	chr3	133547660	133547660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagccgccctcgctggccGggggctcctggggtttgtcc	16	15	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133547660	T	T	133547660	3	4	48	1	0	0	0	0	1	0	0	0	13060	1116	39	1	31	1	RAB6B	3	133547660	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	171864	133547660	64474770	338	51925											
EPHB1	2047	broad.mit.edu	37	chr3	134670058	134670058	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatctttaaaatcaagttgCgcttagatgtgttcatttct	7	6	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134670058	G	G	134670058	1	3	48	0	1	0	0	0	0	0	0	0	5216	783	27	4		4	EPHB1	3	134670058	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1122398	134670058	63352372	339	51926											
EPHB1	2047	broad.mit.edu	37	chr3	134670328	134670328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaccttcatcaaccggcGgggggcccatcgcatctaca	9	17	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134670328	T	T	134670328	3	4	48	1	0	0	0	0	1	0	0	0	5216	1116	39	1	249	1	EPHB1	3	134670328	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	270	134670328	63352102	340	51927											
TXNDC6	347736	broad.mit.edu	37	chr3	138023966	138023966	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacggaatgggagggagttAgtgagcagccttgctaccag	15	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138023966	C	C	138023966	1	2	48	0	1	0	0	0	0	0	0	0	16926	435	15	5		5	TXNDC6	3	138023966	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3353638	138023966	59998464	341	51928											
CLSTN2	64084	broad.mit.edu	37	chr3	140151003	140151003	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcctgggggtcggtccaGgaactcagatttcagtctca	12	11	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140151003	A	A	140151003	1	1	48	0	1	0	0	0	0	0	0	0	3594	1015	35	4		4	CLSTN2	3	140151003	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2127037	140151003	57871427	342	51929											
CLSTN2	64084	broad.mit.edu	37	chr3	140178690	140178690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtggctggacatggacaCagccaaggaggatgtggaag	17	7	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140178690	A	A	140178690	1	1	48	0	1	0	0	0	0	0	0	0	3594	493	17	3		3	CLSTN2	3	140178690	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	27687	140178690	57843740	343	51930											
ATR	545	broad.mit.edu	37	chr3	142281403	142281403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtcagtatccatttctaCaaggtgttttaataattcca	6	7	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142281403	A	A	142281403	3	1	48	1	0	0	0	0	1	0	0	0	1208	478	17	3	7269	3	ATR	3	142281403	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2102713	142281403	55741027	344	51931											
TRPC1	7220	broad.mit.edu	37	chr3	142523308	142523308	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acaaagaatggaagtttgctCgagcaaaattatggcttagc	10	6	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142523308	G	G	142523308	3	3	48	1	0	0	0	0	1	0	0	0	16703	876	31	4	1930	4	TRPC1	3	142523308	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	241905	142523308	55499122	345	51932											
HLTF	6596	broad.mit.edu	37	chr3	148764045	148764045	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaattagggactgtaaacGcctaatcagaataaaacaaa	6	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148764045	A	A	148764045	3	1	48	1	0	0	0	0	1	0	0	0	7282	1101	38	4	1167	4	HLTF	3	148764045	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6240737	148764045	49258385	346	51933											
SLC33A1	9197	broad.mit.edu	37	chr3	155571368	155571368	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgggacaagccaagatttgCgacgaccgaagttcttaacg	11	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155571368	T	T	155571368	3	4	48	1	0	0	0	0	1	0	0	0	14680	768	27	4	1254	4	SLC33A1	3	155571368	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6807323	155571368	42451062	347	51934											
IQCJ	654502	broad.mit.edu	37	chr3	158983086	158983086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacaagttgcctggtggaaGgaaggtgattcttctctacc	13	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158983086	A	A	158983086	3	1	48	1	0	0	0	0	1	0	0	0	7882	1000	35	4	440	4	IQCJ	3	158983086	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3411718	158983086	39039344	348	51935											
PPM1L	151742	broad.mit.edu	37	chr3	160624698	160624698	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggcagctgatttcctttAgaacaagcaaatgtgagagc	10	8	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160624698	G	G	160624698	1	3	48	0	1	0	0	0	0	0	0	0	12445	435	15	5		5	PPM1L	3	160624698	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1641612	160624698	37397732	349	51936											
NMD3	51068	broad.mit.edu	37	chr3	160965079	160965079	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgtaacttaaatgatgaGcatgtcaacaaaatgaactc	6	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160965079	A	A	160965079	2	1	48	1	0	0	0	0	0	0	0	1	10583	962	34	4		4	NMD3	3	160965079	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	340381	160965079	37057351	350	51937											
SI	6476	broad.mit.edu	37	chr3	164793808	164793808	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttcttgccatctaaaaaCagaaaagaatatatatttaa	3	6	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164793808	T	T	164793808	1	4	48	0	1	0	0	0	0	0	0	0	14410	493	17	4		4	SI	3	164793808	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3828729	164793808	33228622	351	51938											
MECOM	2122	broad.mit.edu	37	chr3	169276805	169276806	+	Intron	DEL	AC	-	-													tctgtcttctcaaagcatctAcacacacacacactatacac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169276806	-	-	169276805	6	5	48	0	1	1	0	1	0	0	0	0	9515	406	14	0		0	MECOM	3	169276805	Intron	DEL	AC	TCGA-17-Z015-01A-01W-0746-08	4482997	169276805	28745625	352	51939											
SEC62	7095	broad.mit.edu	37	chr3	169703589	169703589	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accgaggtttcttgattcttCtaggtgtatgtatggatcta	10	6	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169703589	A	A	169703589	1	1	48	0	1	0	0	0	0	0	0	0	14117	928	32	3		3	SEC62	3	169703589	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	426784	169703589	28318841	353	51940											
USP13	8975	broad.mit.edu	37	chr3	179399940	179399940	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacagcactgcttgcaaaatCcagagagtctcccaaacctt	6	13	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179399940	T	T	179399940	1	4	48	0	1	0	0	0	0	0	0	0	17170	870	30	4		4	USP13	3	179399940	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9696351	179399940	18622490	354	51941											
PEX5L	51555	broad.mit.edu	37	chr3	179615934	179615934	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctatgggtctgcccacctgtGatgtcatagtaaggaggggc	14	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179615934	T	T	179615934	4	4	48	1	0	0	0	0	0	1	0	0	11844	1294	45	3	1738	3	PEX5L	3	179615934	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	215994	179615934	18406496	355	51942											
TTC14	151613	broad.mit.edu	37	chr3	180320030	180320030	+	5'UTR	DEL	G	-	-													ctatcagcccgtcggcctccGggccctgcattctctagcca							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180320030	-	-	180320030	6	5	48	0	1	1	0	1	0	0	0	0	16807	1131	39	0		0	TTC14	3	180320030	5'UTR	DEL	G	TCGA-17-Z015-01A-01W-0746-08	704096	180320030	17702400	356	51943											
KLHL24	54800	broad.mit.edu	37	chr3	183382794	183382794	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctctctcaataaaggcagAtggcgtcacaaaatggctgt	10	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183382794	T	T	183382794	3	4	48	1	0	0	0	0	1	0	0	0	8450	330	12	5	1201	5	KLHL24	3	183382794	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3062764	183382794	14639636	357	51944											
ETV5	2119	broad.mit.edu	37	chr3	185798928	185798928	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggggctgtgcagctccCgtttgatcttggttggaggt	17	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185798928	T	T	185798928	3	4	48	1	0	0	0	0	1	0	0	0	5324	652	23	4	1295	4	ETV5	3	185798928	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2416134	185798928	12223502	358	51945											
TBCCD1	55171	broad.mit.edu	37	chr3	186271888	186271888	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcaggtgatccacccacctCggcctcccaaagtgctggga	10	16	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186271888	G	G	186271888	1	3	48	0	1	0	0	0	0	0	0	0	15754	899	31	4		4	TBCCD1	3	186271888	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	472960	186271888	11750542	359	51946											
AHSG	197	broad.mit.edu	37	chr3	186337578	186337578	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactaatttaaggttggcgCgtcaatgaaattggggggga	14	4	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186337578	T	T	186337578	1	4	48	0	1	0	0	0	0	0	0	0	420	783	27	4		4	AHSG	3	186337578	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	65690	186337578	11684852	360	51947											
BCL6	604	broad.mit.edu	37	chr3	187442985	187442985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccactctgctcacctgcaCacagggactgagtgggcctt	12	14	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187442985	A	A	187442985	1	1	48	0	1	0	0	0	0	0	0	0	1381	493	17	3		3	BCL6	3	187442985	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1105407	187442985	10579445	361	51948											
RNF168	165918	broad.mit.edu	37	chr3	196214492	196214492	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatccttctctgaacgtttTggtatacttgcaatatttca	5	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196214492	C	C	196214492	1	2	48	0	1	0	0	0	0	0	0	0	13570	1827	63	5		5	RNF168	3	196214492	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	8771507	196214492	1807938	362	51949											
PPP2R2C	5522	broad.mit.edu	37	chr4	6494118	6494118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtccagggtcgtggtGctgaagacttgatggggtag	17	7	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6494118	T	T	6494118	1	4	48	0	1	0	0	0	0	0	0	0	12487	1334	46	3		3	PPP2R2C	4	6494118	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08		6494118	184660158	363	51950											
ARAP2	116984	broad.mit.edu	37	chr4	36231049	36231049	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtaagagatactgctcCaaattaatgctcattaggaa	7	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36231049	G	G	36231049	3	3	48	1	0	0	0	0	1	0	0	0	841	593	21	4	5182	4	ARAP2	4	36231049	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	29736931	36231049	154923227	364	51951											
WDR19	57728	broad.mit.edu	37	chr4	39276448	39276448	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattgtacccatcctgacgTcaactgtgattgagtgtcac	8	11	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39276448	A	A	39276448	3	1	48	1	0	0	0	0	1	0	0	0	17406	1667	58	5	3716	5	WDR19	4	39276448	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3045399	39276448	151877828	365	51952											
C4orf34	201895	broad.mit.edu	37	chr4	39606740	39606740	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgagagcaaacacattcaCagggatcaaatccaccttct	6	12	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39606740	T	T	39606740	3	4	48	1	0	0	0	0	1	0	0	0	2287	478	17	4	289	4	C4orf34	4	39606740	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	330292	39606740	151547536	366	51953											
LIMCH1	22998	broad.mit.edu	37	chr4	41673202	41673202	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtacttctccatgccagAcagtgaggggactgctcagt	12	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41673202	G	G	41673202	1	3	48	0	1	0	0	0	0	0	0	0	8869	290	10	5		5	LIMCH1	4	41673202	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2066462	41673202	149481074	367	51954											
SLC30A9	10463	broad.mit.edu	37	chr4	42072578	42072578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcctaggttctttgggtGtgggcaccttattaggcatg	13	8	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42072578	T	T	42072578	3	4	48	1	0	0	0	0	1	0	0	0	14676	1377	48	3	1346	3	SLC30A9	4	42072578	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	399376	42072578	149081698	368	51955											
KCTD8	386617	broad.mit.edu	37	chr4	44266874	44266874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtgcatgccattgccCaggcttgcttaggtaaacaa	13	9	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44266874	A	A	44266874	1	1	48	0	1	0	0	0	0	0	0	0	8185	609	21	2		2	KCTD8	4	44266874	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2194296	44266874	146887402	369	51956											
SCFD2	152579	broad.mit.edu	37	chr4	53751768	53751768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacattgtgaaacaggcGgtagcaggagggagggaaca	17	5	0	2	rs114828846	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53751768	T	T	53751768	1	4	48	0	1	0	0	0	0	0	0	0	14002	1131	39	1		1	SCFD2	4	53751768	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	9484894	53751768	137402508	370	51957											
PDGFRA	5156	broad.mit.edu	37	chr4	55087364	55087364	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaccttactcatccagcAgaagatggaatttttgattc	8	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55087364	C	C	55087364	1	2	48	0	1	0	0	0	0	0	0	0	11755	203	7	5		5	PDGFRA	4	55087364	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1335596	55087364	136066912	371	51958											
KIT	3815	broad.mit.edu	37	chr4	55561740	55561740	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catccatccatccaggaaaaTcagacttaatagtccgcgtg	7	12	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55561740	C	C	55561740	3	2	48	1	0	0	0	0	1	0	0	0	8400	1435	50	5	136	5	KIT	4	55561740	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	474376	55561740	135592536	372	51959											
KDR	3791	broad.mit.edu	37	chr4	55972875	55972875	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttttttccttcaattagAgcaaattgatttttattaac	4	5	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55972875	G	G	55972875	2	3	48	1	0	0	0	0	0	0	0	1	8209	291	11	5		5	KDR	4	55972875	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	411135	55972875	135181401	373	51960											
NMU	10874	broad.mit.edu	37	chr4	56482460	56482460	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggagagtttaagcactAcacaaacacctacattatta	5	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56482460	G	G	56482460	1	3	48	0	1	0	0	0	0	0	0	0	10600	406	14	5		5	NMU	4	56482460	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	509585	56482460	134671816	374	51961											
EPHA5	2044	broad.mit.edu	37	chr4	66217200	66217200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttactgttgattaagatGtttctggcagcaagatctct	10	6	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66217200	T	T	66217200	3	4	48	1	0	0	0	0	1	0	0	0	5212	1368	48	3	718	3	EPHA5	4	66217200	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	9734740	66217200	124937076	375	51962											
UGT2A1	10941	broad.mit.edu	37	chr4	70460862	70460862	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcccactgtacagcttttCtttccccacagtcttaccaa	4	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70460862	T	T	70460862	1	4	48	0	1	0	0	0	0	0	0	0	17079	928	32	4		4	UGT2A1	4	70460862	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4243662	70460862	120693414	376	51963											
UGT2A1	10941	broad.mit.edu	37	chr4	70505439	70505439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataaagtaatatttagtgCgatggttacactcagtcgta	8	5	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70505439	A	A	70505439	1	1	48	0	1	0	0	0	0	0	0	0	17079	783	27	3		3	UGT2A1	4	70505439	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	44577	70505439	120648837	377	51964											
CSN3	1448	broad.mit.edu	37	chr4	71114782	71114782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccaatgtattatgtgcCaaatagctatccttattatg	6	8	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71114782	A	A	71114782	3	1	48	1	0	0	0	0	1	0	0	0	3983	594	21	2	165	2	CSN3	4	71114782	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	609343	71114782	120039494	378	51965											
FRAS1	80144	broad.mit.edu	37	chr4	79207482	79207482	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctcaagattgggctgtgtAagcactggcatgggggtggt	17	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79207482	T	T	79207482	1	4	48	0	1	0	0	0	0	0	0	0	6102	377	13	5		5	FRAS1	4	79207482	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	8092700	79207482	111946794	379	51966											
FRAS1	80144	broad.mit.edu	37	chr4	79417957	79417957	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttgtgccattggctctAggtgaagaactgtacggtct	12	8	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79417957	T	T	79417957	5	4	48	1	0	0	0	0	0	0	1	0	6102	434	15	5	9270	5	FRAS1	4	79417957	Splice_Site	SNP	A	TCGA-17-Z015-01A-01W-0746-08	210475	79417957	111736319	380	51967											
MAPK10	5602	broad.mit.edu	37	chr4	87090215	87090215	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccacaccaaaaacccatctGtacatcaccatcatcaaaga	2	15	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87090215	C	C	87090215	1	2	48	0	1	0	0	0	0	0	0	0	9364	1392	48	4		4	MAPK10	4	87090215	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	7672258	87090215	104064061	381	51968											
AFF1	4299	broad.mit.edu	37	chr4	87967184	87967184	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttaaggaacttaggctttCtttaaatcacagccgtcatc	8	9	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87967184	G	G	87967184	1	3	48	0	1	0	0	0	0	0	0	0	356	928	32	4		4	AFF1	4	87967184	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	876969	87967184	103187092	382	51969											
FAM13A	10144	broad.mit.edu	37	chr4	89950666	89950666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctggaatgccattctcGgtgagcccctgccgttcaag	11	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89950666	T	T	89950666	2	4	48	1	0	0	0	0	0	0	0	1	5498	1103	39	1		1	FAM13A	4	89950666	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1983482	89950666	101203610	383	51970											
GRID2	2895	broad.mit.edu	37	chr4	93743739	93743739	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatctacaggttgtcaatgGagaaggccacactcaacacg	9	11	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93743739	T	T	93743739	1	4	48	0	1	0	0	0	0	0	0	0	6838	1189	41	3		3	GRID2	4	93743739	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3793073	93743739	97410537	384	51971											
GRID2	2895	broad.mit.edu	37	chr4	94436331	94436331	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgaaaatactcagtaatgTgtctcttgtgtctctcttct	6	9	5	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94436331	A	A	94436331	1	1	48	0	1	0	0	0	0	0	0	0	6838	1711	59	5		5	GRID2	4	94436331	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	692592	94436331	96717945	385	51972											
BMPR1B	658	broad.mit.edu	37	chr4	95894255	95894255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcaaactccatgtgggtcCcgtgacagcatctaggtggg	13	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95894255	A	A	95894255	1	1	48	0	1	0	0	0	0	0	0	0	1476	638	22	2		2	BMPR1B	4	95894255	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1457924	95894255	95260021	386	51973											
UNC5C	8633	broad.mit.edu	37	chr4	96091363	96091363	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcctctcgtctggggggCatccaggctgctacagagct	14	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96091363	T	T	96091363	3	4	48	1	0	0	0	0	1	0	0	0	17119	710	25	4	231	4	UNC5C	4	96091363	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	197108	96091363	95062913	387	51974											
UNC5C	8633	broad.mit.edu	37	chr4	96091647	96091647	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcctgaaagttgtgcatcActagatgtaacctggctcag	10	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96091647	G	G	96091647	1	3	48	0	1	0	0	0	0	0	0	0	17119	174	6	5		5	UNC5C	4	96091647	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	284	96091647	95062629	388	51975											
PPP3CA	5530	broad.mit.edu	37	chr4	101947137	101947137	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatggcatctctgcgaggcGgcatcctctcattaattcgg	11	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101947137	A	A	101947137	3	1	48	1	0	0	0	0	1	0	0	0	12498	1116	39	4	118	4	PPP3CA	4	101947137	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5855490	101947137	89207139	389	51976											
DKK2	27123	broad.mit.edu	37	chr4	108178994	108178994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcacaagctgaacctaCccatgtaacaaaacatccag	5	13	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108178994	A	A	108178994	1	1	48	0	1	0	0	0	0	0	0	0	4585	522	18	3		3	DKK2	4	108178994	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6231857	108178994	82975282	390	51977											
COL25A1	84570	broad.mit.edu	37	chr4	109810494	109810494	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctctgggcaccatcacagGgatggcctagcccccttctt	9	16	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109810494	T	T	109810494	1	4	48	0	1	0	0	0	0	0	0	0	3716	1247	43	2		2	COL25A1	4	109810494	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1631500	109810494	81343782	391	51978											
ENPEP	2028	broad.mit.edu	37	chr4	111470556	111470556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctctgggatggaatgatGctggagaccatgtcacaaag	12	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111470556	T	T	111470556	3	4	48	1	0	0	0	0	1	0	0	0	5170	1319	46	3	2264	3	ENPEP	4	111470556	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1660062	111470556	79683720	392	51979											
C4orf21	55345	broad.mit.edu	37	chr4	113541202	113541202	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctgacatccaagagatcGgccagaggatataaatgtcc	12	9	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113541202	A	A	113541202	4	1	48	1	0	0	0	0	0	1	0	0	2277	1124	39	4	6103	4	C4orf21	4	113541202	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2070646	113541202	77613074	393	51980											
ANK2	287	broad.mit.edu	37	chr4	114275193	114275193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaccacccacaggccacatCcagctgcgtcaccctctctg	7	19	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114275193	A	A	114275193	3	1	48	1	0	0	0	0	1	0	0	0	621	855	30	3	5634	3	ANK2	4	114275193	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	733991	114275193	76879083	394	51981											
ANK2	287	broad.mit.edu	37	chr4	114278824	114278824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctcttcatctttcgagcCtactatgtccgctacaacaa	5	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114278824	A	A	114278824	3	1	48	1	0	0	0	0	1	0	0	0	621	681	24	2	9265	2	ANK2	4	114278824	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3631	114278824	76875452	395	51982											
NDST4	64579	broad.mit.edu	37	chr4	115858750	115858750	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctatttagaatacattgAactctatgctaaatatgaga	5	6	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115858750	T	T	115858750	1	4	48	0	1	0	0	0	0	0	0	0	10353	261	9	5		5	NDST4	4	115858750	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1579926	115858750	75295526	396	51983											
SLC25A31	83447	broad.mit.edu	37	chr4	128694602	128694602	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtgaagatataccaacAtgaaggaatcagttcctttt	7	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128694602	T	T	128694602	3	4	48	1	0	0	0	0	1	0	0	0	14609	217	8	5	843	5	SLC25A31	4	128694602	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	12835852	128694602	62459674	397	51984											
HSPA4L	22824	broad.mit.edu	37	chr4	128744825	128744825	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtataaaccagtaactttttCtaaaaattagggtgtaagag	8	4	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128744825	T	T	128744825	1	4	48	0	1	0	0	0	0	0	0	0	7482	928	32	4		4	HSPA4L	4	128744825	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	50223	128744825	62409451	398	51985											
PLK4	10733	broad.mit.edu	37	chr4	128807079	128807079	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcaccagaaattgccactcGaagtgcacatggccttgaat	8	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128807079	A	A	128807079	3	1	48	1	0	0	0	0	1	0	0	0	12193	1058	37	4	572	4	PLK4	4	128807079	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	62254	128807079	62347197	399	51986											
HHIP	64399	broad.mit.edu	37	chr4	145628274	145628274	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttgatttgagaacagccaGagtctttcttgaagttgcag	11	6	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145628274	T	T	145628274	3	4	48	1	0	0	0	0	1	0	0	0	7159	942	33	3	1041	3	HHIP	4	145628274	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	16821195	145628274	45526002	400	51987											
GRIA2	2891	broad.mit.edu	37	chr4	158283987	158283987	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtctgagcaacgttgctGgagtattctacatccttgtc	9	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158283987	T	T	158283987	4	4	48	1	0	0	0	0	0	1	0	0	6834	1349	47	2	2620	2	GRIA2	4	158283987	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	12655713	158283987	32870289	401	51988											
TMEM144	55314	broad.mit.edu	37	chr4	159156650	159156650	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactttctacagtacaccacCgcatagtgtaaggagaggtt	9	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159156650	T	T	159156650	3	4	48	1	0	0	0	0	1	0	0	0	16181	652	23	4	578	4	TMEM144	4	159156650	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	872663	159156650	31997626	402	51989											
FSTL5	56884	broad.mit.edu	37	chr4	162463754	162463754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaccagccaagctgaggCtttggtatgccctctgcatg	10	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162463754	A	A	162463754	3	1	48	1	0	0	0	0	1	0	0	0	6140	796	28	3	1468	3	FSTL5	4	162463754	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3307104	162463754	28690522	403	51990											
KLHL2	11275	broad.mit.edu	37	chr4	166219024	166219025	+	Intron	DNP	GG	TT	TT													agtaaaggaccccgcaggctGgagtgcagtggcgtcatctc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	166219025	TT	TT	166219024	1	4	48	0	1	0	0	0	0	0	0	0	8445	1363	47	2		2	KLHL2	4	166219024	Intron	DNP	GG	TCGA-17-Z015-01A-01W-0746-08	3755270	166219024	24935252	404	51991											
GALNTL6	442117	broad.mit.edu	37	chr4	172986439	172986439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaatagggtttgtgctcCtatgagactctaatgccacc	8	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172986439	A	A	172986439	1	1	48	0	1	0	0	0	0	0	0	0	6287	696	24	2		2	GALNTL6	4	172986439	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6767415	172986439	18167837	405	51992											
GPM6A	2823	broad.mit.edu	37	chr4	176777567	176777567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaagtgcttttgggcacCagcaggaaagaaccccatac	11	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176777567	A	A	176777567	1	1	48	0	1	0	0	0	0	0	0	0	6680	609	21	2		2	GPM6A	4	176777567	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3791128	176777567	14376709	406	51993											
VEGFC	7424	broad.mit.edu	37	chr4	177648845	177648845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaccaagttagtttaaagCaaccagaagtttaaacacat	6	7	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177648845	A	A	177648845	1	1	48	0	1	0	0	0	0	0	0	0	17279	725	25	3		3	VEGFC	4	177648845	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	871278	177648845	13505431	407	51994											
FAM149A	25854	broad.mit.edu	37	chr4	187075718	187075718	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgctgacctaacggcacgTtcatccctggaagaagaggt	12	10	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187075718	G	G	187075718	2	3	48	1	0	0	0	0	0	0	0	1	5501	1712	60	5		5	FAM149A	4	187075718	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	9426873	187075718	4078558	408	51995											
PLEKHG4B	153478	broad.mit.edu	37	chr5	181795	181795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgtcaagggcacaggtacGgtggctcggtcccgccctca	13	14	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181795	A	A	181795	1	1	48	0	1	0	0	0	0	0	0	0	12167	1131	39	4		4	PLEKHG4B	5	181795	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08		181795	180733465	409	51996											
SLC6A19	340024	broad.mit.edu	37	chr5	1216785	1216785	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccgcgccacacagcgctacGacgactgcttcagcacgtga	10	16	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1216785	A	A	1216785	3	1	48	1	0	0	0	0	1	0	0	0	14796	1058	37	4	1026	4	SLC6A19	5	1216785	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1034990	1216785	179698475	410	51997											
FAM105A	54491	broad.mit.edu	37	chr5	14601255	14601255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggtcactgtatcatccttAaatttcaaatgtatctttac	4	8	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14601255	T	T	14601255	1	4	48	0	1	0	0	0	0	0	0	0	5433	377	13	5		5	FAM105A	5	14601255	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	13384470	14601255	166314005	411	51998											
FBXL7	23194	broad.mit.edu	37	chr5	15769260	15769260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttggcacatggctcccCctgccaccagctgcctcctt	8	19	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15769260	A	A	15769260	1	1	48	0	1	0	0	0	0	0	0	0	5781	638	22	2		2	FBXL7	5	15769260	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1168005	15769260	165146000	412	51999											
FBXL7	23194	broad.mit.edu	37	chr5	15937326	15937326	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatccggcgttgtattcaCacaaacctgaacaaagcaaa	6	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15937326	A	A	15937326	1	1	48	0	1	0	0	0	0	0	0	0	5781	493	17	3		3	FBXL7	5	15937326	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	168066	15937326	164977934	413	52000											
FAM134B	54463	broad.mit.edu	37	chr5	16475022	16475022	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcctcttctgggatgGgggcagcctgagaaagtgct	15	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16475022	T	T	16475022	3	4	48	1	0	0	0	0	1	0	0	0	5492	1232	43	2	175	2	FAM134B	5	16475022	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	537696	16475022	164440238	414	52001											
MYO10	4651	broad.mit.edu	37	chr5	16711189	16711189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccctgttttctccaacCcctttgaaaagaaagagaat	7	10	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16711189	A	A	16711189	1	1	48	0	1	0	0	0	0	0	0	0	10156	638	22	2		2	MYO10	5	16711189	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	236167	16711189	164204071	415	52002											
CDH18	1016	broad.mit.edu	37	chr5	19483704	19483704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatacacttagtcaagccGccattcaagattcacatttc	4	11	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19483704	T	T	19483704	1	4	48	0	1	0	0	0	0	0	0	0	3133	1102	38	3		3	CDH18	5	19483704	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2772515	19483704	161431556	416	52003											
CDH18	1016	broad.mit.edu	37	chr5	19483744	19483744	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctttaatggataaaatgggGatgtgtatctttcttgtttc	9	5	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19483744	T	T	19483744	1	4	48	0	1	0	0	0	0	0	0	0	3133	1189	41	3		3	CDH18	5	19483744	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	40	19483744	161431516	417	52004											
CDH12	1010	broad.mit.edu	37	chr5	21802193	21802193	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaatcatcatgcagttttgGacagagaattggttctctgg	10	6	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21802193	T	T	21802193	1	4	48	0	1	0	0	0	0	0	0	0	3128	1189	41	3		3	CDH12	5	21802193	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2318449	21802193	159113067	418	52005											
CDH12	1010	broad.mit.edu	37	chr5	21883798	21883798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaggtgacaaggctcaaCttgaaaaacgtattcaagaa	9	6	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21883798	T	T	21883798	1	4	48	0	1	0	0	0	0	0	0	0	3128	580	20	4		4	CDH12	5	21883798	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	81605	21883798	159031462	419	52006											
PRDM9	56979	broad.mit.edu	37	chr5	23509999	23509999	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttctcccagctcttccaTtttagaacaaaatttttgct	3	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23509999	C	C	23509999	1	2	48	0	1	0	0	0	0	0	0	0	12569	1508	52	5		5	PRDM9	5	23509999	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1626201	23509999	157405261	420	52007											
PRDM9	56979	broad.mit.edu	37	chr5	23524382	23524382	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggtgatgggccatacCtggatctgatactgggaact	13	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23524382	T	T	23524382	1	4	48	0	1	0	0	0	0	0	0	0	12569	696	24	4		4	PRDM9	5	23524382	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	14383	23524382	157390878	421	52008											
CDH10	1008	broad.mit.edu	37	chr5	24535164	24535165	+	Intron	DEL	TG	-	-													tttctttttctttctttgtcTgtctttttttactctaaatc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24535165	-	-	24535164	6	5	48	0	1	1	0	1	0	0	0	0	3126	1595	55	0		0	CDH10	5	24535164	Intron	DEL	TG	TCGA-17-Z015-01A-01W-0746-08	1010782	24535164	156380096	422	52009											
CDH6	1004	broad.mit.edu	37	chr5	31316365	31316365	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatattaaagttctagatGtcaatgacaacgccccagaa	6	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31316365	A	A	31316365	3	1	48	1	0	0	0	0	1	0	0	0	3144	1377	48	4	1471	4	CDH6	5	31316365	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6781201	31316365	149598895	423	52010											
CDH6	1004	broad.mit.edu	37	chr5	31323217	31323217	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggttaaaggaaaatgacacGgaccccactgccccgccata	9	13	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31323217	C	C	31323217	2	2	48	1	0	0	0	0	0	0	0	1	3144	1103	39	4		4	CDH6	5	31323217	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6852	31323217	149592043	424	52011											
PDZD2	23037	broad.mit.edu	37	chr5	32061173	32061173	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctttaagcaaagtccAcgccatcttgagtaaatgcc	8	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32061173	G	G	32061173	3	3	48	1	0	0	0	0	1	0	0	0	11795	159	6	5	2434	5	PDZD2	5	32061173	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	737956	32061173	148854087	425	52012											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658334	33658334	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaagccagagggagtcccGaatcttcattgatgttacaa	10	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33658334	A	A	33658334	3	1	48	1	0	0	0	0	1	0	0	0	257	1059	37	4	3711	4	ADAMTS12	5	33658334	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1597161	33658334	147256926	426	52013											
SLC45A2	51151	broad.mit.edu	37	chr5	33964168	33964168	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catatttagcaaattatcgtTcattttcctcatgcatagac	4	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33964168	C	C	33964168	1	2	48	0	1	0	0	0	0	0	0	0	14755	1798	62	5		5	SLC45A2	5	33964168	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	305834	33964168	146951092	427	52014											
SPEF2	79925	broad.mit.edu	37	chr5	35668654	35668654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaaagggcaacatgatgGgttctgtggtgatagaaggt	15	4	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35668654	T	T	35668654	1	4	48	0	1	0	0	0	0	0	0	0	15153	1247	43	2		2	SPEF2	5	35668654	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1704486	35668654	145246606	428	52015											
SPEF2	79925	broad.mit.edu	37	chr5	35792527	35792527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaactttcctagtaattgGatgcaccttacccaacctga	5	12	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35792527	T	T	35792527	3	4	48	1	0	0	0	0	1	0	0	0	15153	1183	41	3	4676	3	SPEF2	5	35792527	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	123873	35792527	145122733	429	52016											
UGT3A1	133688	broad.mit.edu	37	chr5	35988626	35988626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaatctgagacaccCggtccaacagtaggtaatgg	11	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35988626	A	A	35988626	3	1	48	1	0	0	0	0	1	0	0	0	17089	652	23	1	1555	1	UGT3A1	5	35988626	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	196099	35988626	144926634	430	52017											
LMBRD2	92255	broad.mit.edu	37	chr5	36105365	36105365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttatgggtcacagtctatGgaggtacagaaagaaaaatc	10	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36105365	T	T	36105365	1	4	48	0	1	0	0	0	0	0	0	0	8917	1363	47	2		2	LMBRD2	5	36105365	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	116739	36105365	144809895	431	52018											
RANBP3L	202151	broad.mit.edu	37	chr5	36284428	36284429	+	Intron	INS	-	T	T													ttgggtagaaggaatgcagcINStttttaattaatacaggtat					rs140779703	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36284429	T	T	36284428	6	5	48	0	1	1	1	0	0	0	0	0	13138	812	28	0		0	RANBP3L	5	36284428	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	179063	36284428	144630832	432	52019											
EGFLAM	133584	broad.mit.edu	37	chr5	38458524	38458524	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcccgcagcatgaggcagAgccagagctgagcagtggtg	15	12	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38458524	T	T	38458524	1	4	48	0	1	0	0	0	0	0	0	0	5006	319	11	5		5	EGFLAM	5	38458524	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2174096	38458524	142456736	433	52020											
C9	735	broad.mit.edu	37	chr5	39285368	39285368	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataagtatcaaatcttaatCatcaataggattttactttg	4	5	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39285368	A	A	39285368	1	1	48	0	1	0	0	0	0	0	0	0	2469	841	29	3		3	C9	5	39285368	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	826844	39285368	141629892	434	52021											
C6	729	broad.mit.edu	37	chr5	41158703	41158703	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgaataggaaaacagtaactCtaattaaaagacaagctata	6	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41158703	G	G	41158703	1	3	48	0	1	0	0	0	0	0	0	0	2338	928	32	4		4	C6	5	41158703	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1873335	41158703	139756557	435	52022											
C6	729	broad.mit.edu	37	chr5	41159470	41159470	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaacttcctttgtgggataTgatagggttcttctaaggat	11	5	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41159470	C	C	41159470	1	2	48	0	1	0	0	0	0	0	0	0	2338	1479	51	5		5	C6	5	41159470	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	767	41159470	139755790	436	52023											
C6	729	broad.mit.edu	37	chr5	41164189	41164189	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagaaataaacaaggatgGaaaagaagaaaggaaggaag	14	1	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41164189	T	T	41164189	1	4	48	0	1	0	0	0	0	0	0	0	2338	1189	41	3		3	C6	5	41164189	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4719	41164189	139751071	437	52024											
CCL28	56477	broad.mit.edu	37	chr5	43388579	43388579	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcaatgggaagtatggCtaaaagaagaaaagaaagaa	14	2	0	4	rs78470036		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43388579	A	A	43388579	5	1	48	1	0	0	0	0	0	0	1	0	2928	811	28	3	327	3	CCL28	5	43388579	Splice_Site	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2224390	43388579	137526681	438	52025											
HCN1	348980	broad.mit.edu	37	chr5	45353354	45353354	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccacttgcttatactgtaAggaagggaaaataaaattaa	7	5	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45353354	G	G	45353354	1	3	48	0	1	0	0	0	0	0	0	0	7062	87	3	5		5	HCN1	5	45353354	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1964775	45353354	135561906	439	52026											
GZMK	3003	broad.mit.edu	37	chr5	54327100	54327100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcccagaacagggacgcccGcctaagacagagggaccaca	11	14	0	3	rs140825158	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54327100	A	A	54327100	1	1	48	0	1	0	0	0	0	0	0	0	6983	1102	38	4		4	GZMK	5	54327100	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8973746	54327100	126588160	440	52027											
DDX4	54514	broad.mit.edu	37	chr5	55075873	55075873	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttccgaggttgccgtggagGatttggtctaggaagtccaa	14	7	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55075873	C	C	55075873	3	2	48	1	0	0	0	0	1	0	0	0	4393	1174	41	4	543	4	DDX4	5	55075873	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	748773	55075873	125839387	441	52028											
PDE4D	5144	broad.mit.edu	37	chr5	58317296	58317296	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcactgggttacttatatGgcagcatataaagttgacct	9	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58317296	A	A	58317296	1	1	48	0	1	0	0	0	0	0	0	0	11736	1363	47	4		4	PDE4D	5	58317296	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3241423	58317296	122597964	442	52029											
NAIP	4671	broad.mit.edu	37	chr5	70308408	70308408	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtggtcttctatggggAgtctcgtgaggccggcacca	14	10	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70308408	G	G	70308408	3	3	48	1	0	0	0	0	1	0	0	0	10241	304	11	5	3932	5	NAIP	5	70308408	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	11991112	70308408	110606852	443	52030											
TMEM171	134285	broad.mit.edu	37	chr5	72419493	72419493	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcagcagatggaccccgAccgagccttcatctgtggag	13	12	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72419493	G	G	72419493	3	3	48	1	0	0	0	0	1	0	0	0	16211	275	10	5	295	5	TMEM171	5	72419493	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2111085	72419493	108495767	444	52031											
IQGAP2	10788	broad.mit.edu	37	chr5	75954465	75954465	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggacatcaagattggactGctggtgaagaacaggatcac	12	7	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75954465	A	A	75954465	2	1	48	1	0	0	0	0	0	0	0	1	7885	1306	46	4		4	IQGAP2	5	75954465	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3534972	75954465	104960795	445	52032											
RASGRF2	5924	broad.mit.edu	37	chr5	80429898	80429899	+	Intron	INS	-	GT	GT													agtaggaaatgcttgtgtgcINSgtgtgtgtgtgtgtgtgtgt					rs139770057	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	80429899	GT	GT	80429898	6	5	48	0	1	1	1	0	0	0	0	0	13181	783	27	0		0	RASGRF2	5	80429898	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	4475433	80429898	100485362	446	52033											
CKMT2	1160	broad.mit.edu	37	chr5	80550258	80550258	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatcaaactaagacacaAcggctatgaccccagggtga	9	12	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80550258	G	G	80550258	3	3	48	1	0	0	0	0	1	0	0	0	3482	43	2	5	405	5	CKMT2	5	80550258	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	120360	80550258	100365002	447	52034											
ZCCHC9	84240	broad.mit.edu	37	chr5	80604290	80604290	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatagcttaataagatgaGaaatgttttaaatatgtttt	6	1	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80604290	A	A	80604290	1	1	48	0	1	0	0	0	0	0	0	0	17721	957	33	4		4	ZCCHC9	5	80604290	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	54032	80604290	100310970	448	52035											
VCAN	1462	broad.mit.edu	37	chr5	82808182	82808183	+	Missense_Mutation	DNP	CC	AA	AA													accagacaggcttccctcccCctgatagcagatttgatgcc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	82808183	AA	AA	82808182	3	1	48	1	0	0	0	0	1	0	0	0	17265	623	22	2	1027	2	VCAN	5	82808182	Missense_Mutation	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	2203892	82808182	98107078	449	52036											
RASA1	5921	broad.mit.edu	37	chr5	86645181	86645181	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaggccggtattataacaGgtaaatcataattttttagc	10	5	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86645181	C	C	86645181	3	2	48	1	0	0	0	0	1	0	0	0	13168	1014	35	4	1295	4	RASA1	5	86645181	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3836999	86645181	94270079	450	52037											
MEGF10	84466	broad.mit.edu	37	chr5	126732432	126732432	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacctgcgaccacgtcacGggggaatgccgctgcccacc	12	18	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126732432	A	A	126732432	2	1	48	1	0	0	0	0	0	0	0	1	9553	1103	39	4		4	MEGF10	5	126732432	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	40087251	126732432	54182828	451	52038											
FBN2	2201	broad.mit.edu	37	chr5	127668831	127668831	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaagtaaagatgcaaccGtatggagaaaagagtagcct	10	5	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127668831	A	A	127668831	1	1	48	0	1	0	0	0	0	0	0	0	5760	1160	40	4		4	FBN2	5	127668831	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	936399	127668831	53246429	452	52039											
SLC27A6	28965	broad.mit.edu	37	chr5	128335250	128335250	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctagttttttatatctaGattcctacctgacatgtcca	4	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128335250	T	T	128335250	1	4	48	0	1	0	0	0	0	0	0	0	14644	957	33	3		3	SLC27A6	5	128335250	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	666419	128335250	52580010	453	52040											
PCDHA1	56147	broad.mit.edu	37	chr5	140166174	140166174	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgtgccagtggagcgCggagtgcagcatccacctgg	17	11	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140166174	T	T	140166174	3	4	48	1	0	0	0	0	1	0	0	0	11613	768	27	4	301	4	PCDHA1	5	140166174	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	11830924	140166174	40749086	454	52041											
PCDHA5	56143	broad.mit.edu	37	chr5	140203277	140203277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgctctctggatgagacCgaagcaccgcgccaccgcct	10	17	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140203277	A	A	140203277	2	1	48	1	0	0	0	0	0	0	0	1	11621	639	23	1		1	PCDHA5	5	140203277	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	37103	140203277	40711983	455	52042											
PCDHA6	56142	broad.mit.edu	37	chr5	140208622	140208622	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttgaacaagaaaacttaTacaaaatcctcattgacgcc	4	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140208622	C	C	140208622	3	2	48	1	0	0	0	0	1	0	0	0	11622	1406	49	5	948	5	PCDHA6	5	140208622	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	5345	140208622	40706638	456	52043											
PCDHA8	56140	broad.mit.edu	37	chr5	140222201	140222201	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaccgcgcgggacgggggctCgccttcgctgtgggccaccg	17	15	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140222201	G	G	140222201	3	3	48	1	0	0	0	0	1	0	0	0	11624	893	31	4	1297	4	PCDHA8	5	140222201	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	13579	140222201	40693059	457	52044											
PCDHB2	56133	broad.mit.edu	37	chr5	140475894	140475894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccctcgcctccctggtctCcatcaacgcggacaacggcc	9	20	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140475894	A	A	140475894	3	1	48	1	0	0	0	0	1	0	0	0	11636	855	30	3	1522	3	PCDHB2	5	140475894	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	253693	140475894	40439366	458	52045											
PCDHGB1	56104	broad.mit.edu	37	chr5	140731490	140731490	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgacctcaatgacaatGcgccacgggtgctgtacccc	12	14	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140731490	T	T	140731490	3	4	48	1	0	0	0	0	1	0	0	0	11656	1319	46	3	1665	3	PCDHGB1	5	140731490	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	255596	140731490	40183770	459	52046											
PCDHGB4	8641	broad.mit.edu	37	chr5	140769092	140769092	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgcgaacgtgagcctgcgCgtgttagtggacgaccgcaa	15	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140769092	T	T	140769092	2	4	48	1	0	0	0	0	0	0	0	1	11659	755	27	4		4	PCDHGB4	5	140769092	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	37602	140769092	40146168	460	52047											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773662	140773662	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgatggcctcagatctaGgaacaccacctctgtccact	8	14	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140773662	T	T	140773662	4	4	48	1	0	0	0	0	0	1	0	0	11654	1001	35	2	1284	2	PCDHGA8	5	140773662	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4570	140773662	40141598	461	52048											
PPP2R2B	5521	broad.mit.edu	37	chr5	146070866	146070866	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagctcataagggagttttCctgggggcaatggggagagg	17	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146070866	A	A	146070866	1	1	48	0	1	0	0	0	0	0	0	0	12486	870	30	3		3	PPP2R2B	5	146070866	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5297204	146070866	34844394	462	52049											
PPP2R2B	5521	broad.mit.edu	37	chr5	146080909	146080909	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgcccacactgcacagtGgtctcctggaacatctggag	11	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146080909	C	C	146080909	1	2	48	0	1	0	0	0	0	0	0	0	12486	1363	47	4		4	PPP2R2B	5	146080909	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	10043	146080909	34834351	463	52050											
SH3TC2	79628	broad.mit.edu	37	chr5	148421175	148421175	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacagggctctgcagaagaAgtggcctgtggataatgaga	15	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148421175	T	T	148421175	3	4	48	1	0	0	0	0	1	0	0	0	14375	72	3	5	3379	5	SH3TC2	5	148421175	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2340266	148421175	32494085	464	52051											
SH3TC2	79628	broad.mit.edu	37	chr5	148427380	148427380	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagggatcctgtagcagactGacacaagtcagtactcagca	10	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148427380	T	T	148427380	1	4	48	0	1	0	0	0	0	0	0	0	14375	1305	45	3		3	SH3TC2	5	148427380	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6205	148427380	32487880	465	52052											
ABLIM3	22885	broad.mit.edu	37	chr5	148626008	148626008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagccaggctgagtggggtGcacatgccggagctgatctt	15	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148626008	T	T	148626008	1	4	48	0	1	0	0	0	0	0	0	0	96	1334	46	3		3	ABLIM3	5	148626008	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	198628	148626008	32289252	466	52053											
CAMK2A	815	broad.mit.edu	37	chr5	149636358	149636358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcactgtaatactcccgGgccacgatatcttcaaacag	7	14	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149636358	T	T	149636358	2	4	48	1	0	0	0	0	0	0	0	1	2625	1219	43	2		2	CAMK2A	5	149636358	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1010350	149636358	31278902	467	52054											
NDST1	3340	broad.mit.edu	37	chr5	149912381	149912381	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacaggcatgagccaccacGccgtccttgacattctttat	7	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149912381	A	A	149912381	1	1	48	0	1	0	0	0	0	0	0	0	10350	1102	38	4		4	NDST1	5	149912381	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	276023	149912381	31002879	468	52055											
GM2A	2760	broad.mit.edu	37	chr5	150760042	150760042	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgacttggaaacatgtgccTatccaagagcagttatgatg	10	7	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150760042	C	C	150760042	1	2	48	0	1	0	0	0	0	0	0	0	6548	1537	53	5		5	GM2A	5	150760042	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	847661	150760042	30155218	469	52056											
FAM114A2	10827	broad.mit.edu	37	chr5	153377264	153377264	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatatactaaaaactaaaaActattgaattgtacacttaa	2	5	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153377264	G	G	153377264	1	3	48	0	1	0	0	0	0	0	0	0	5450	58	2	5		5	FAM114A2	5	153377264	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2617222	153377264	27537996	470	52057											
FAM114A2	10827	broad.mit.edu	37	chr5	153406765	153406765	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttcttgggaaagcatctCcagagcttctagatgtgaaa	9	8	3	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153406765	A	A	153406765	4	1	48	1	0	0	0	0	0	1	0	0	5450	864	30	3	789	3	FAM114A2	5	153406765	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	29501	153406765	27508495	471	52058											
GALNT10	55568	broad.mit.edu	37	chr5	153717034	153717034	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgcagtaattaaaatcTcctgccactgccatggctac	6	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153717034	C	C	153717034	1	2	48	0	1	0	0	0	0	0	0	0	6270	1566	54	5		5	GALNT10	5	153717034	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	310269	153717034	27198226	472	52059											
SGCD	6444	broad.mit.edu	37	chr5	156017843	156017843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctctccctattccttcCcctctctcctaccacccctt	1	22	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156017843	A	A	156017843	1	1	48	0	1	0	0	0	0	0	0	0	14314	638	22	2		2	SGCD	5	156017843	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2300809	156017843	24897417	473	52060											
TIMD4	91937	broad.mit.edu	37	chr5	156375423	156375423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaaaaatcacagcccccCtacctccaggctgaggagaa	7	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156375423	A	A	156375423	1	1	48	0	1	0	0	0	0	0	0	0	16026	696	24	2		2	TIMD4	5	156375423	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	357580	156375423	24539837	474	52061											
FAM71B	153745	broad.mit.edu	37	chr5	156590312	156590312	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgctggattcattttctcCtggatttttgatagctgctc	8	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156590312	T	T	156590312	3	4	48	1	0	0	0	0	1	0	0	0	5659	690	24	4	857	4	FAM71B	5	156590312	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	214889	156590312	24324948	475	52062											
FABP6	2172	broad.mit.edu	37	chr5	159650389	159650389	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccctccctccctccctcCctctctccttccttccttcc	0	25	1	0	rs71579117		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159650389	T	T	159650389	1	4	48	0	1	0	0	0	0	0	0	0	5407	638	22	4		4	FABP6	5	159650389	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3060077	159650389	21264871	476	52063											
SLIT3	6586	broad.mit.edu	37	chr5	168176542	168176542	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaggaaaaatggcttcTggcacctagggttcccactg	11	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168176542	A	A	168176542	3	1	48	1	0	0	0	0	1	0	0	0	14855	1580	55	5	2571	5	SLIT3	5	168176542	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	8526153	168176542	12738718	477	52064											
SLIT3	6586	broad.mit.edu	37	chr5	168324901	168324901	+	Intron	DEL	C	-	-													cagccttgtcctctgagacaCccccccacctttgcatccag					rs111565966		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	168324901	-	-	168324901	6	5	48	0	1	1	0	1	0	0	0	0	14855	522	18	0		0	SLIT3	5	168324901	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	148359	168324901	12590359	478	52065											
CCDC99	54908	broad.mit.edu	37	chr5	169023733	169023733	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacagttaaaaaaacacacAtccaaattttgatttgaata	3	6	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169023733	T	T	169023733	1	4	48	0	1	0	0	0	0	0	0	0	2904	232	8	5		5	CCDC99	5	169023733	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	698832	169023733	11891527	479	52066											
DOCK2	1794	broad.mit.edu	37	chr5	169477278	169477278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaaagtgttcatctacCgcgggaaggaatatgagcga	12	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169477278	A	A	169477278	3	1	48	1	0	0	0	0	1	0	0	0	4727	652	23	1	4252	1	DOCK2	5	169477278	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	453545	169477278	11437982	480	52067											
KCNIP1	30820	broad.mit.edu	37	chr5	169780838	169780838	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaaggtgggcactgtcCcttctgggtgctgacagcag	14	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169780838	A	A	169780838	1	1	48	0	1	0	0	0	0	0	0	0	8109	638	22	2		2	KCNIP1	5	169780838	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	303560	169780838	11134422	481	52068											
KCNIP1	30820	broad.mit.edu	37	chr5	169898705	169898705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctcagggctcctgagCctccccctgcctcctccctc	8	21	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169898705	A	A	169898705	1	1	48	0	1	0	0	0	0	0	0	0	8109	754	26	3		3	KCNIP1	5	169898705	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	117867	169898705	11016555	482	52069											
HRH2	3274	broad.mit.edu	37	chr5	175110088	175110088	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgaagccttccccacccCctggccaaaaaaaaaaaaaa	4	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175110088	A	A	175110088	1	1	48	0	1	0	0	0	0	0	0	0	7423	638	22	2		2	HRH2	5	175110088	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5211383	175110088	5805172	483	52070											
GPRIN1	114787	broad.mit.edu	37	chr5	176025350	176025350	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtccccaaggacctgggatCgcctggacctgaagacacag	12	13	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176025350	T	T	176025350	3	4	48	1	0	0	0	0	1	0	0	0	6795	884	31	4	1544	4	GPRIN1	5	176025350	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	915262	176025350	4889910	484	52071											
FGFR4	2264	broad.mit.edu	37	chr5	176522357	176522357	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctctgacaaggacctggccGacctggtctcggagatggag	14	12	2	2	rs34158682		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176522357	A	A	176522357	3	1	48	1	0	0	0	0	1	0	0	0	5925	1058	37	4	1658	4	FGFR4	5	176522357	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	497007	176522357	4392903	485	52072											
ZNF454	285676	broad.mit.edu	37	chr5	178391871	178391871	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaggaatgtgatgaatccGggagcactatgagctcatct	11	9	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178391871	C	C	178391871	3	2	48	1	0	0	0	0	1	0	0	0	18050	1116	39	4	480	4	ZNF454	5	178391871	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1869514	178391871	2523389	486	52073											
BTNL8	79908	broad.mit.edu	37	chr5	180326273	180326273	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcacctctcctgtcatcCgtttccatgccgtgaggtcc	8	17	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180326273	A	A	180326273	1	1	48	0	1	0	0	0	0	0	0	0	1577	667	23	1		1	BTNL8	5	180326273	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1934402	180326273	588987	487	52074											
IRF4	3662	broad.mit.edu	37	chr6	397185	397185	+	Frame_Shift_Del	DEL	C	-	-													gatcagccacacccggaaatCccgtaccaatgtcccatgac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	397185	-	-	397185	7	5	48	1	0	1	0	1	0	0	0	0	7902	845	30	0	584	0	IRF4	6	397185	Frame_Shift_Del	DEL	C	TCGA-17-Z015-01A-01W-0746-08		397185	170717882	488	52075											
SLC22A23	63027	broad.mit.edu	37	chr6	3287280	3287280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccttcacctcgtggccCatcatgctcctggcaaagca	9	16	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3287280	A	A	3287280	3	1	48	1	0	0	0	0	1	0	0	0	14566	594	21	2	717	2	SLC22A23	6	3287280	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2890095	3287280	167827787	489	52076											
F13A1	2162	broad.mit.edu	37	chr6	6248675	6248675	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttggagaaagaaaaacaaAgagaaactagtgttcactct	8	5	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6248675	T	T	6248675	1	4	48	0	1	0	0	0	0	0	0	0	5383	87	3	5		5	F13A1	6	6248675	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2961395	6248675	164866392	490	52077											
RREB1	6239	broad.mit.edu	37	chr6	7230227	7230227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatgacagcgcccggcgGcaagaagacgcccgccatgc	12	16	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7230227	T	T	7230227	3	4	48	1	0	0	0	0	1	0	0	0	13790	1203	42	3	1921	3	RREB1	6	7230227	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	981552	7230227	163884840	491	52078											
DSP	1832	broad.mit.edu	37	chr6	7583538	7583538	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagccattccttcggggtGcaggatctatcgctggagca	12	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7583538	A	A	7583538	3	1	48	1	0	0	0	0	1	0	0	0	4821	1319	46	4	6137	4	DSP	6	7583538	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	353311	7583538	163531529	492	52079											
BMP6	654	broad.mit.edu	37	chr6	7861863	7861863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccgcaagcctccaacgtcCagcaagtcatcagtttcaca	6	15	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7861863	A	A	7861863	1	1	48	0	1	0	0	0	0	0	0	0	1470	609	21	2		2	BMP6	6	7861863	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	278325	7861863	163253204	493	52080											
BMP6	654	broad.mit.edu	37	chr6	7862664	7862664	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggtcagcctccagccgGcgccgacaacagagtcgtaa	11	15	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7862664	T	T	7862664	2	4	48	1	0	0	0	0	0	0	0	1	1470	1190	42	3		3	BMP6	6	7862664	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	801	7862664	163252403	494	52081											
SLC35B3	51000	broad.mit.edu	37	chr6	8417116	8417116	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaagtaaatccctcctaCctgttacagcaataagtgca	6	11	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8417116	A	A	8417116	5	1	48	1	0	0	0	0	0	0	1	0	14691	521	18	3	231	3	SLC35B3	6	8417116	Splice_Site	SNP	C	TCGA-17-Z015-01A-01W-0746-08	554452	8417116	162697951	495	52082											
HIVEP1	3096	broad.mit.edu	37	chr6	12124121	12124121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcaccgggaaatgaggCgtactgcatcagaacagatt	12	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12124121	T	T	12124121	3	4	48	1	0	0	0	0	1	0	0	0	7253	768	27	4	4103	4	HIVEP1	6	12124121	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3707005	12124121	158990946	496	52083											
SLC17A2	10246	broad.mit.edu	37	chr6	25917015	25917015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaacccaggaaaatggcCcaaagtggtaggcatgtgac	11	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25917015	A	A	25917015	3	1	48	1	0	0	0	0	1	0	0	0	14530	624	22	2	498	2	SLC17A2	6	25917015	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	13792894	25917015	145198052	497	52084											
HIST1H4D	8360	broad.mit.edu	37	chr6	26189055	26189055	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtacaccacgtccatggCtgtgactgtcttgcgtttgg	12	12	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26189055	T	T	26189055	3	4	48	1	0	0	0	0	1	0	0	0	7235	797	28	4	65	4	HIST1H4D	6	26189055	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	272040	26189055	144926012	498	52085											
BTN3A3	10384	broad.mit.edu	37	chr6	26448982	26448982	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaaatccagtacatggctCgtgagtgactctgacatttt	10	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26448982	A	A	26448982	3	1	48	1	0	0	0	0	1	0	0	0	1574	898	31	3	986	3	BTN3A3	6	26448982	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	259927	26448982	144666085	499	52086											
OR2B6	26212	broad.mit.edu	37	chr6	27925457	27925457	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgcctccagttggcagctGcatcctgggttactggtttt	11	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27925457	C	C	27925457	3	2	48	1	0	0	0	0	1	0	0	0	11085	1319	46	4	441	4	OR2B6	6	27925457	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1476475	27925457	143189610	500	52087											
ZNF193	7746	broad.mit.edu	37	chr6	28194853	28194853	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggtaccttttaagctgttCaaggtcaagatgaatacaaa	9	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28194853	T	T	28194853	1	4	48	0	1	0	0	0	0	0	0	0	17883	841	29	4		4	ZNF193	6	28194853	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	269396	28194853	142920214	501	52088											
ZNF193	7746	broad.mit.edu	37	chr6	28195201	28195201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctccagggctgggtgagGgaacactgtccagagagtgg	18	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28195201	T	T	28195201	3	4	48	1	0	0	0	0	1	0	0	0	17883	1223	43	2	341	2	ZNF193	6	28195201	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	348	28195201	142919866	502	52089											
HLA-G	3135	broad.mit.edu	37	chr6	29864594	29864594	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaccagacctgcagggtaTagaaccttccagaagtgggc	14	10	0	3	rs115939242	byFrequency;by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29864594	C	C	29864594	1	2	48	0	1	0	0	0	0	0	0	0	7279	1421	49	5		5	HLA-G	6	29864594	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1669393	29864594	141250473	503	52090											
LTB	4050	broad.mit.edu	37	chr6	31548850	31548850	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctgcgggagcgccagcCcctcggcgtccgagaactgc	14	17	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31548850	T	T	31548850	3	4	48	1	0	0	0	0	1	0	0	0	9157	623	22	4	367	4	LTB	6	31548850	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1684256	31548850	139566217	504	52091											
BAT2	7916	broad.mit.edu	37	chr6	31603426	31603426	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgctgagccacaatccaAgaacctggattctgggcact	9	13	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31603426	C	C	31603426	3	2	48	1	0	0	0	0	1	0	0	0	1324	72	3	5	5531	5	BAT2	6	31603426	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	54576	31603426	139511641	505	52092											
ZBTB9	221504	broad.mit.edu	37	chr6	33422863	33422863	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttcccaattcttgtcAccttcgaggaggccatggaa	8	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33422863	C	C	33422863	1	2	48	0	1	0	0	0	0	0	0	0	17684	174	6	5		5	ZBTB9	6	33422863	5'UTR	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1819437	33422863	137692204	506	52093											
PPARD	5467	broad.mit.edu	37	chr6	35378976	35378976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggaccacagcatgcacttCcttccagcagctacacaggt	10	14	0	0	rs147861745		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35378976	A	A	35378976	3	1	48	1	0	0	0	0	1	0	0	0	12394	855	30	3	131	3	PPARD	6	35378976	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1956113	35378976	135736091	507	52094											
FTSJD2	23070	broad.mit.edu	37	chr6	37445234	37445234	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttggtgtcctcgctgccGgtgggctgggtggtttcagg	19	9	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37445234	A	A	37445234	1	1	48	0	1	0	0	0	0	0	0	0	6151	1131	39	4		4	FTSJD2	6	37445234	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2066258	37445234	133669833	508	52095											
KIF6	221458	broad.mit.edu	37	chr6	39563849	39563849	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgttctaagtaatgtagtGacaagttgatatacttggcc	9	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39563849	C	C	39563849	4	2	48	1	0	0	0	0	0	1	0	0	8378	1294	45	4	1685	4	KIF6	6	39563849	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2118615	39563849	131551218	509	52096											
LRFN2	57497	broad.mit.edu	37	chr6	40400506	40400506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccggagggtgtcctccCcaaggcttggcagccgattg	15	14	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40400506	A	A	40400506	3	1	48	1	0	0	0	0	1	0	0	0	9025	623	22	2	2030	2	LRFN2	6	40400506	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	836657	40400506	130714561	510	52097											
TREML4	285852	broad.mit.edu	37	chr6	41204319	41204319	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccaagggcctgatgttgtGagtcctgttagtgctcctga	14	9	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41204319	C	C	41204319	4	2	48	1	0	0	0	0	0	0	0	0	16598	1285	45	4	620	4	TREML4	6	41204319	Nonstop_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	803813	41204319	129910748	511	52098											
NCR2	9436	broad.mit.edu	37	chr6	41304236	41304236	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcctccatcacccctggTttcccaatcgtggaagccac	9	16	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41304236	C	C	41304236	1	2	48	0	1	0	0	0	0	0	0	0	10333	1740	60	5		5	NCR2	6	41304236	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	99917	41304236	129810831	512	52099											
UBR2	23304	broad.mit.edu	37	chr6	42611955	42611955	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaaaaaaaaaagacaGgtgtctccatgatggatcca	7	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42611955	C	C	42611955	3	2	48	1	0	0	0	0	1	0	0	0	17028	1000	35	4	2321	4	UBR2	6	42611955	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1307719	42611955	128503112	513	52100											
POLH	5429	broad.mit.edu	37	chr6	43568549	43568549	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcccactggggatgttGtgggataccaagttttagag	13	6	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43568549	A	A	43568549	1	1	48	0	1	0	0	0	0	0	0	0	12297	1392	48	4		4	POLH	6	43568549	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	956594	43568549	127546518	514	52101											
SPATS1	221409	broad.mit.edu	37	chr6	44344260	44344260	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaactggaggagtccgcCgggtatggtggctcactcct	13	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44344260	T	T	44344260	1	4	48	0	1	0	0	0	0	0	0	0	15134	667	23	4		4	SPATS1	6	44344260	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	775711	44344260	126770807	515	52102											
ENPP5	59084	broad.mit.edu	37	chr6	46129366	46129366	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatattgaggaggtggcaTagtagtgggtacaaatctgt	15	3	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46129366	C	C	46129366	2	2	48	1	0	0	0	0	0	0	0	1	5175	1393	49	5		5	ENPP5	6	46129366	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1785106	46129366	124985701	516	52103											
TDRD6	221400	broad.mit.edu	37	chr6	46657163	46657163	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgggattaatctgaaccGtgtgtttggagtacagtcgt	13	5	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46657163	A	A	46657163	3	1	48	1	0	0	0	0	1	0	0	0	15856	1145	40	4	1300	4	TDRD6	6	46657163	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	527797	46657163	124457904	517	52104											
PLA2G7	7941	broad.mit.edu	37	chr6	46675888	46675888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatccatgcatccagggCaataccacatctgtagatat	6	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46675888	A	A	46675888	3	1	48	1	0	0	0	0	1	0	0	0	12104	710	25	3	457	3	PLA2G7	6	46675888	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	18725	46675888	124439179	518	52105											
C6orf138	442213	broad.mit.edu	37	chr6	47872275	47872275	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaagtttgcccacctctGacttagaatctcctggaaag	8	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47872275	T	T	47872275	1	4	48	0	1	0	0	0	0	0	0	0	2355	1305	45	3		3	C6orf138	6	47872275	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1196387	47872275	123242792	519	52106											
MUT	4594	broad.mit.edu	37	chr6	49419138	49419138	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctataaatctttacaaatcTgtaaattctgaaaacaaagt	3	6	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49419138	C	C	49419138	1	2	48	0	1	0	0	0	0	0	0	0	10085	1595	55	5		5	MUT	6	49419138	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1546863	49419138	121695929	520	52107											
CENPQ	55166	broad.mit.edu	37	chr6	49440482	49440482	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatcagactactatttattCcatctttttttcttttctag	3	9	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49440482	A	A	49440482	1	1	48	0	1	0	0	0	0	0	0	0	3271	870	30	3		3	CENPQ	6	49440482	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	21344	49440482	121674585	521	52108											
CRISP1	167	broad.mit.edu	37	chr6	49825141	49825141	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaaaataacacaattttaGattattctcaattcatggga	5	5	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49825141	C	C	49825141	1	2	48	0	1	0	0	0	0	0	0	0	3911	957	33	4		4	CRISP1	6	49825141	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	384659	49825141	121289926	522	52109											
PKHD1	5314	broad.mit.edu	37	chr6	51923295	51923295	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtacatggctccacccaaCagctccaacttgggagtctt	8	13	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51923295	A	A	51923295	2	1	48	1	0	0	0	0	0	0	0	1	12066	465	17	3		3	PKHD1	6	51923295	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2098154	51923295	119191772	523	52110											
GFRAL	389400	broad.mit.edu	37	chr6	55223617	55223617	+	Intron	DEL	G	-	-													ctatgtctttcattaggtgaGgggggatcacatgttaatgt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55223617	-	-	55223617	6	5	48	0	1	1	0	1	0	0	0	0	6415	1015	35	0		0	GFRAL	6	55223617	Intron	DEL	G	TCGA-17-Z015-01A-01W-0746-08	3300322	55223617	115891450	524	52111											
GFRAL	389400	broad.mit.edu	37	chr6	55266660	55266660	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagaactctgattcattagGagtcatggacctataacaat	9	7	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55266660	T	T	55266660	1	4	48	0	1	0	0	0	0	0	0	0	6415	1189	41	3		3	GFRAL	6	55266660	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	43043	55266660	115848407	525	52112											
PRIM2	5558	broad.mit.edu	37	chr6	57314489	57314489	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaattactaagcaaaggAgtactatagattaaatgtgt	8	3	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57314489	G	G	57314489	1	3	48	0	1	0	0	0	0	0	0	0	12597	319	11	5		5	PRIM2	6	57314489	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2047829	57314489	113800578	526	52113											
PRIM2	5558	broad.mit.edu	37	chr6	57390335	57390335	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcctttgactttttttgtGattatcacatcctacttcta	5	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57390335	T	T	57390335	1	4	48	0	1	0	0	0	0	0	0	0	12597	1305	45	3		3	PRIM2	6	57390335	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	75846	57390335	113724732	527	52114											
PRIM2	5558	broad.mit.edu	37	chr6	57434028	57434028	+	Intron	DEL	C	-	-													caaaatgccctttgccttttCccccccgtttttcattacct					rs66506304		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57434028	-	-	57434028	6	5	48	0	1	1	0	1	0	0	0	0	12597	870	30	0		0	PRIM2	6	57434028	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	43693	57434028	113681039	528	52115											
KHDRBS2	202559	broad.mit.edu	37	chr6	62604607	62604607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcactgttggtgcccccCgggctcgaggggtagggaca	17	12	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62604607	A	A	62604607	3	1	48	1	0	0	0	0	1	0	0	0	8217	652	23	1	322	1	KHDRBS2	6	62604607	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5170579	62604607	108510460	529	52116											
PTP4A1	7803	broad.mit.edu	37	chr6	64259011	64259011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttaactcctgctcgaaggaCaggtggtctcttagtgggga	14	8	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64259011	T	T	64259011	1	4	48	0	1	0	0	0	0	0	0	0	12876	493	17	4		4	PTP4A1	6	64259011	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1654404	64259011	106856056	530	52117											
EYS	346007	broad.mit.edu	37	chr6	66013900	66013900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagagcagcaccagctccCcgtctcaacatgaggccact	9	16	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66013900	A	A	66013900	1	1	48	0	1	0	0	0	0	0	0	0	5375	638	22	2		2	EYS	6	66013900	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1754889	66013900	105101167	531	52118											
EYS	346007	broad.mit.edu	37	chr6	66104062	66104062	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtaaaaatttgatcctcctGatatgttgagaatattggag	9	4	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66104062	T	T	66104062	1	4	48	0	1	0	0	0	0	0	0	0	5375	1305	45	3		3	EYS	6	66104062	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	90162	66104062	105011005	532	52119											
BAI3	577	broad.mit.edu	37	chr6	70071172	70071172	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattggcatggaaaccttgcCgcatgaaaggctattgcact	10	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70071172	T	T	70071172	3	4	48	1	0	0	0	0	1	0	0	0	1305	652	23	4	4113	4	BAI3	6	70071172	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3967110	70071172	101043895	533	52120											
COL19A1	1310	broad.mit.edu	37	chr6	70744137	70744137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttatattctttctacagGgtttgaaaggtgacttgggt	12	4	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70744137	T	T	70744137	3	4	48	1	0	0	0	0	1	0	0	0	3708	1246	43	2	1127	2	COL19A1	6	70744137	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	672965	70744137	100370930	534	52121											
FAM135A	57579	broad.mit.edu	37	chr6	71269450	71269450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaatgatccacaacttGcttcgacccgttctgcaaag	7	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71269450	T	T	71269450	3	4	48	1	0	0	0	0	1	0	0	0	5494	1310	46	3	4530	3	FAM135A	6	71269450	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	525313	71269450	99845617	535	52122											
B3GAT2	135152	broad.mit.edu	37	chr6	71571537	71571537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtgtaatgaataccttaGtgcagttatttgctttcggt	9	6	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71571537	T	T	71571537	3	4	48	1	0	0	0	0	1	0	0	0	1259	1029	36	3	98	3	B3GAT2	6	71571537	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	302087	71571537	99543530	536	52123											
HTR1B	3351	broad.mit.edu	37	chr6	78172078	78172078	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaagtcaaagatggctAggtggaaccagcaggcatct	13	7	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78172078	T	T	78172078	3	4	48	1	0	0	0	0	1	0	0	0	7507	420	15	5	133	5	HTR1B	6	78172078	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	6600541	78172078	92942989	537	52124											
SNAP91	9892	broad.mit.edu	37	chr6	84333034	84333034	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttacctgtgtgaggtcagGaatgtcacctttatcaatac	9	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84333034	C	C	84333034	3	2	48	1	0	0	0	0	1	0	0	0	14947	1174	41	4	2010	4	SNAP91	6	84333034	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6160956	84333034	86782033	538	52125											
MDN1	23195	broad.mit.edu	37	chr6	90468013	90468013	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagatttcttttgcctacaTcagttgctggattcatacag	9	8	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90468013	A	A	90468013	3	1	48	1	0	0	0	0	1	0	0	0	9508	1435	50	5	14463	5	MDN1	6	90468013	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	6134979	90468013	80647054	539	52126											
EPHA7	2045	broad.mit.edu	37	chr6	93956666	93956666	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgggcagtccatgggtGctggtaaacgataaccttct	12	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93956666	A	A	93956666	3	1	48	1	0	0	0	0	1	0	0	0	5214	1319	46	4	438	4	EPHA7	6	93956666	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3488653	93956666	77158401	540	52127											
EPHA7	2045	broad.mit.edu	37	chr6	93967898	93967898	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcacacaaaaagtctcTcctttgtttttctgtgtaac	5	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93967898	C	C	93967898	3	2	48	1	0	0	0	0	1	0	0	0	5214	1559	54	5	995	5	EPHA7	6	93967898	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	11232	93967898	77147169	541	52128											
WISP3	8838	broad.mit.edu	37	chr6	112385761	112385761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccatgtggggtttatagcCtgcaatataataaaaatgcc	9	7	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112385761	A	A	112385761	1	1	48	0	1	0	0	0	0	0	0	0	17501	696	24	2		2	WISP3	6	112385761	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	18417863	112385761	58729306	542	52129											
HS3ST5	222537	broad.mit.edu	37	chr6	114383950	114383950	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatacaggagactcccaacGgcaaggcttcccagcaccag	10	14	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114383950	A	A	114383950	2	1	48	1	0	0	0	0	0	0	0	1	7435	1103	39	4		4	HS3ST5	6	114383950	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1998189	114383950	56731117	543	52130											
SLC35F1	222553	broad.mit.edu	37	chr6	118588148	118588148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgtttaccttcatccCtcccaatagctcctggactg	7	13	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118588148	A	A	118588148	1	1	48	0	1	0	0	0	0	0	0	0	14702	696	24	2		2	SLC35F1	6	118588148	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4204198	118588148	52526919	544	52131											
CLVS2	134829	broad.mit.edu	37	chr6	123369765	123369765	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctccatgttactctAggatagtttcccagcgcgat	7	10	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123369765	T	T	123369765	5	4	48	1	0	0	0	0	0	0	1	0	3604	434	15	5	573	5	CLVS2	6	123369765	Splice_Site	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4781617	123369765	47745302	545	52132											
C6orf58	352999	broad.mit.edu	37	chr6	127898668	127898668	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcattgtaatgatctacCgatagacctatgaagtattt	6	6	2	3	rs117572080	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127898668	T	T	127898668	1	4	48	0	1	0	0	0	0	0	0	0	2391	667	23	4		4	C6orf58	6	127898668	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4528903	127898668	43216399	546	52133											
LAMA2	3908	broad.mit.edu	37	chr6	129634381	129634381	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaatctcattgccagacaTggagttttcattgatatgca	7	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129634381	A	A	129634381	1	1	48	0	1	0	0	0	0	0	0	0	8678	1479	51	5		5	LAMA2	6	129634381	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1735713	129634381	41480686	547	52134											
EPB41L2	2037	broad.mit.edu	37	chr6	131186653	131186653	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaatgtaccatcctctccaTatgatcccctgcattgcttt	5	13	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131186653	G	G	131186653	1	3	48	0	1	0	0	0	0	0	0	0	5195	1421	49	5		5	EPB41L2	6	131186653	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1552272	131186653	39928414	548	52135											
EYA4	2070	broad.mit.edu	37	chr6	133767992	133767992	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaatatcttattatcaaTaacacaaatcagcattatat	1	6	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133767992	A	A	133767992	1	1	48	0	1	0	0	0	0	0	0	0	5374	1421	49	5		5	EYA4	6	133767992	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2581339	133767992	37347075	549	52136											
GRM1	2911	broad.mit.edu	37	chr6	146351044	146351044	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggactctctgatttccattCgagatgagaaggatgggatc	13	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146351044	T	T	146351044	4	4	48	1	0	0	0	0	0	1	0	0	6862	876	31	4	393	4	GRM1	6	146351044	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	12583052	146351044	24764023	550	52137											
SYNE1	23345	broad.mit.edu	37	chr6	152532593	152532593	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaaatgactaatttactgGaacctttctttgtaataatt	5	5	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152532593	A	A	152532593	1	1	48	0	1	0	0	0	0	0	0	0	15564	1189	41	4		4	SYNE1	6	152532593	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6181549	152532593	18582474	551	52138											
OPRM1	4988	broad.mit.edu	37	chr6	154414512	154414512	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agatatgacctcccagctatCcttcactcgtcctgccttcg	6	16	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154414512	G	G	154414512	1	3	48	0	1	0	0	0	0	0	0	0	10981	845	30	4		4	OPRM1	6	154414512	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1881919	154414512	16700555	552	52139											
ARID1B	57492	broad.mit.edu	37	chr6	157517494	157517494	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatgatttactagaaaccGtgctttcctcacacacacat	5	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157517494	A	A	157517494	1	1	48	0	1	0	0	0	0	0	0	0	916	1160	40	4		4	ARID1B	6	157517494	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3102982	157517494	13597573	553	52140											
C6orf118	168090	broad.mit.edu	37	chr6	165715321	165715321	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccaggagggccccgtccagGagggcctcctttcttttctt	11	14	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165715321	A	A	165715321	3	1	48	1	0	0	0	0	1	0	0	0	2346	1174	41	4	951	4	C6orf118	6	165715321	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8197827	165715321	5399746	554	52141											
FRMD1	79981	broad.mit.edu	37	chr6	168476129	168476129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgacccagtcaggcatccCctgcaggtaacaggtctggg	13	13	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168476129	A	A	168476129	1	1	48	0	1	0	0	0	0	0	0	0	6109	638	22	2		2	FRMD1	6	168476129	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2760808	168476129	2638938	555	52142											
EIF3B	8662	broad.mit.edu	37	chr7	2414036	2414036	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actttgtaaaattgttttccGaggtggtccagcattaccag	9	8	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2414036	T	T	2414036	1	4	48	0	1	0	0	0	0	0	0	0	5053	1073	37	3		3	EIF3B	7	2414036	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08		2414036	156724627	556	52143											
TNRC18	84629	broad.mit.edu	37	chr7	5360212	5360212	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatgtggggccggttgcccCgctcaccctccaccaccacg	11	18	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5360212	G	G	5360212	3	3	48	1	0	0	0	0	1	0	0	0	16462	652	23	4	2351	4	TNRC18	7	5360212	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2946176	5360212	153778451	557	52144											
NXPH1	30010	broad.mit.edu	37	chr7	8651448	8651448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagcatctctttctcagCagggctcttttgtgtgttct	8	11	5	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8651448	A	A	8651448	1	1	48	0	1	0	0	0	0	0	0	0	10885	725	25	3		3	NXPH1	7	8651448	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3291236	8651448	150487215	558	52145											
THSD7A	221981	broad.mit.edu	37	chr7	11441645	11441645	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catatccacagagaaaagccAgcccgataatcattttaatt	5	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11441645	T	T	11441645	1	4	48	0	1	0	0	0	0	0	0	0	16002	203	7	5		5	THSD7A	7	11441645	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2790197	11441645	147697018	559	52146											
DGKB	1607	broad.mit.edu	37	chr7	14722411	14722411	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggacttcacataggtcttGatgcaagagggaggtgctcg	14	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14722411	A	A	14722411	2	1	48	1	0	0	0	0	0	0	0	1	4506	1280	45	4		4	DGKB	7	14722411	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3280766	14722411	144416252	560	52147											
HDAC9	9734	broad.mit.edu	37	chr7	18633750	18633750	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcaaaggatttgagtcGtagataatatacctccccac	7	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18633750	C	C	18633750	1	2	48	0	1	0	0	0	0	0	0	0	7081	1160	40	4		4	HDAC9	7	18633750	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3911339	18633750	140504913	561	52148											
HDAC9	9734	broad.mit.edu	37	chr7	18819895	18819895	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggggatcaaatatgtcaTtactgtgtgatagtacttta	9	5	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18819895	A	A	18819895	1	1	48	0	1	0	0	0	0	0	0	0	7081	1508	52	5		5	HDAC9	7	18819895	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	186145	18819895	140318768	562	52149											
HDAC9	9734	broad.mit.edu	37	chr7	19018035	19018035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggggaggggatgacaaCacagtgcagatagtcatttc	15	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19018035	A	A	19018035	1	1	48	0	1	0	0	0	0	0	0	0	7081	493	17	3		3	HDAC9	7	19018035	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	198140	19018035	140120628	563	52150											
ABCB5	340273	broad.mit.edu	37	chr7	20666136	20666136	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaaaaattttgcaaattAtattcacattgtaactgctg	6	5	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20666136	G	G	20666136	1	3	48	0	1	0	0	0	0	0	0	0	44	464	16	5		5	ABCB5	7	20666136	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1648101	20666136	138472527	564	52151											
HOXA3	3200	broad.mit.edu	37	chr7	27149875	27149875	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggttgttgctggcattctGaggaggggaggcagaagagg	20	4	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27149875	C	C	27149875	3	2	48	1	0	0	0	0	1	0	0	0	7360	1299	45	4	954	4	HOXA3	7	27149875	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6483739	27149875	131988788	565	52152											
WIPF3	644150	broad.mit.edu	37	chr7	29943995	29943995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtaacacaagcctcatGtctctgaatgtaaaaccagg	8	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29943995	T	T	29943995	3	4	48	1	0	0	0	0	1	0	0	0	17496	1377	48	3	1471	3	WIPF3	7	29943995	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2794120	29943995	129194668	566	52153											
CCDC129	223075	broad.mit.edu	37	chr7	31682379	31682379	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacagcttagtatcatcCcaggactgtcagctagagtc	9	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31682379	A	A	31682379	2	1	48	1	0	0	0	0	0	0	0	1	2790	610	22	2		2	CCDC129	7	31682379	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1738384	31682379	127456284	567	52154											
PDE1C	5137	broad.mit.edu	37	chr7	31890120	31890120	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctgatcagactgatctctCatttagaggttcattgtttc	8	8	4	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31890120	G	G	31890120	1	3	48	0	1	0	0	0	0	0	0	0	11729	841	29	4		4	PDE1C	7	31890120	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	207741	31890120	127248543	568	52155											
AVL9	23080	broad.mit.edu	37	chr7	32956876	32956876	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctcggcgtctctatcCtgctactttctctgactgca	6	16	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32956876	A	A	32956876	1	1	48	0	1	0	0	0	0	0	0	0	1233	696	24	2		2	AVL9	7	32956876	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1066756	32956876	126181787	569	52156											
DPY19L1	23333	broad.mit.edu	37	chr7	34985224	34985224	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaattaatacactgtaaaTatctatttaataaatgaaca	2	5	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34985224	C	C	34985224	1	2	48	0	1	0	0	0	0	0	0	0	4780	1421	49	5		5	DPY19L1	7	34985224	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2028348	34985224	124153439	570	52157											
AOAH	313	broad.mit.edu	37	chr7	36588327	36588327	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggaatctgaatgtcagatActtggaaacctagctttgta	9	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36588327	T	T	36588327	1	4	48	0	1	0	0	0	0	0	0	0	728	406	14	5		5	AOAH	7	36588327	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1603103	36588327	122550336	571	52158											
ELMO1	9844	broad.mit.edu	37	chr7	37052089	37052089	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggtgatgggcctgaccaCagtcacagctgtatatagca	12	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37052089	T	T	37052089	1	4	48	0	1	0	0	0	0	0	0	0	5107	493	17	4		4	ELMO1	7	37052089	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	463762	37052089	122086574	572	52159											
GPR141	353345	broad.mit.edu	37	chr7	37780805	37780805	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttataacgaaatcttcttGagtgtaacagcaattagctg	7	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37780805	T	T	37780805	3	4	48	1	0	0	0	0	1	0	0	0	6714	1281	45	3	812	3	GPR141	7	37780805	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	728716	37780805	121357858	573	52160											
VPS41	27072	broad.mit.edu	37	chr7	38857849	38857850	+	Intron	INS	-	A	A													caatttacagaaaacaaaacINSaaaaaaaaaaaaacagaaag					rs111468558		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38857850	A	A	38857849	6	5	48	0	1	1	1	0	0	0	0	0	17337	493	17	0		0	VPS41	7	38857849	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	1077044	38857849	120280814	574	52161											
C7orf10	79783	broad.mit.edu	37	chr7	40234490	40234491	+	Intron	DNP	TG	GT	GT													aaagttaaaattctatcatgTggggatttgttgagtggaag							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	40234491	GT	GT	40234490	1	3	48	0	1	0	0	0	0	0	0	0	2401	1711	59	5		5	C7orf10	7	40234490	Intron	DNP	TG	TCGA-17-Z015-01A-01W-0746-08	1376641	40234490	118904173	575	52162											
C7orf10	79783	broad.mit.edu	37	chr7	40889582	40889582	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctacaagggtttaggtgGcatttgacaaattcatttga	9	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40889582	T	T	40889582	1	4	48	0	1	0	0	0	0	0	0	0	2401	1218	42	3		3	C7orf10	7	40889582	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	655092	40889582	118249081	576	52163											
INHBA	3624	broad.mit.edu	37	chr7	41729829	41729829	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgtccagggagctcttgcCctggtccagcaaccgctgga	12	14	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41729829	G	G	41729829	3	3	48	1	0	0	0	0	1	0	0	0	7811	623	22	4	584	4	INHBA	7	41729829	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	840247	41729829	117408834	577	52164											
HECW1	23072	broad.mit.edu	37	chr7	43477795	43477795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggttcccaccaacaggtcGtgcccaaaggtggcctgtag	12	12	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43477795	T	T	43477795	1	4	48	0	1	0	0	0	0	0	0	0	7109	1160	40	3		3	HECW1	7	43477795	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1747966	43477795	115660868	578	52165											
URGCP	55665	broad.mit.edu	37	chr7	43916325	43916325	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttttggttcgacaagcCgttcctgatgttttcgagta	10	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43916325	T	T	43916325	3	4	48	1	0	0	0	0	1	0	0	0	17152	652	23	4	62	4	URGCP	7	43916325	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	438530	43916325	115222338	579	52166											
PKD1L1	168507	broad.mit.edu	37	chr7	47852943	47852944	+	Intron	DNP	CC	AA	AA													gatactattcccaaggctacCctgcaatccggggtctccag							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47852944	AA	AA	47852943	1	1	48	0	1	0	0	0	0	0	0	0	12059	638	22	2		2	PKD1L1	7	47852943	Intron	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	3936618	47852943	111285720	580	52167											
COBL	23242	broad.mit.edu	37	chr7	51258706	51258706	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggagaatattctggagagGaacctcagggctcacacgca	13	9	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51258706	A	A	51258706	3	1	48	1	0	0	0	0	1	0	0	0	3685	1174	41	4	3299	4	COBL	7	51258706	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3405763	51258706	107879957	581	52168											
LANCL2	55915	broad.mit.edu	37	chr7	55468883	55468883	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtagtcaatgctattaTtgaatcgggtaagactttgt	11	4	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55468883	A	A	55468883	3	1	48	1	0	0	0	0	1	0	0	0	8693	1493	52	5	713	5	LANCL2	7	55468883	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	4210177	55468883	103669780	582	52169											
PHTF2	57157	broad.mit.edu	37	chr7	77469691	77469691	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgtttatttcatgctataGatgttaggattttgagtggg	11	3	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77469691	C	C	77469691	1	2	48	0	1	0	0	0	0	0	0	0	11958	957	33	4		4	PHTF2	7	77469691	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	22000808	77469691	81668972	583	52170											
CACNA2D1	781	broad.mit.edu	37	chr7	81589186	81589186	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagaaaatgagtatctttTccaaaataaatggaaatctt	5	5	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81589186	C	C	81589186	1	2	48	0	1	0	0	0	0	0	0	0	2574	1798	62	5		5	CACNA2D1	7	81589186	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	4119495	81589186	77549477	584	52171											
PCLO	27445	broad.mit.edu	37	chr7	82544953	82544953	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagctttaactcgtaaggatCctccattgggtcttcctccg	8	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82544953	G	G	82544953	3	3	48	1	0	0	0	0	1	0	0	0	11677	855	30	4	3172	4	PCLO	7	82544953	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	955767	82544953	76593710	585	52172											
GRM3	2913	broad.mit.edu	37	chr7	86493507	86493507	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcccacccttcccccCgagtccccaaagtccattgt	4	21	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86493507	T	T	86493507	1	4	48	0	1	0	0	0	0	0	0	0	6864	667	23	4		4	GRM3	7	86493507	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3948554	86493507	72645156	586	52173											
ABCB1	5243	broad.mit.edu	37	chr7	87151645	87151645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccctatgctggtacaGgccagtactttgccaaacca	9	14	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87151645	T	T	87151645	1	4	48	0	1	0	0	0	0	0	0	0	40	1015	35	2		2	ABCB1	7	87151645	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	658138	87151645	71987018	587	52174											
ABCB1	5243	broad.mit.edu	37	chr7	87174155	87174155	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataccagagcctctttggtaCtaagctttctgtcttgggct	9	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87174155	G	G	87174155	3	3	48	1	0	0	0	0	1	0	0	0	40	565	20	4	1846	4	ABCB1	7	87174155	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	22510	87174155	71964508	588	52175											
ABCB1	5243	broad.mit.edu	37	chr7	87180012	87180012	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactggacaatcttttagatAggtggatagatggccaactc	10	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87180012	T	T	87180012	1	4	48	0	1	0	0	0	0	0	0	0	40	435	15	5		5	ABCB1	7	87180012	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	5857	87180012	71958651	589	52176											
CDK14	5218	broad.mit.edu	37	chr7	90400304	90400304	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctagagagaatcccctcAccctgatgtctgatcaccct	7	14	4	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90400304	T	T	90400304	1	4	48	0	1	0	0	0	0	0	0	0	3160	174	6	5		5	CDK14	7	90400304	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3220292	90400304	68738359	590	52177											
ANKIB1	54467	broad.mit.edu	37	chr7	92017170	92017170	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttatgcactattatacaaGatttaaaaaccatgagcata	4	6	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92017170	T	T	92017170	3	4	48	1	0	0	0	0	1	0	0	0	630	942	33	3	1857	3	ANKIB1	7	92017170	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1616866	92017170	67121493	591	52178											
GNG11	2791	broad.mit.edu	37	chr7	93555527	93555527	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcagctgtgttatttcatAaataacttgggagaaactgc	10	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93555527	G	G	93555527	2	3	48	1	0	0	0	0	0	0	0	1	6588	369	13	5		5	GNG11	7	93555527	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1538357	93555527	65583136	592	52179											
PDAP1	11333	broad.mit.edu	37	chr7	99001133	99001133	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgctcctcttcttcctgtTtcagaaatggacaacctgca	6	12	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99001133	A	A	99001133	1	1	48	0	1	0	0	0	0	0	0	0	11707	1856	64	5		5	PDAP1	7	99001133	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	5445606	99001133	60137530	593	52180											
CYP3A7	1551	broad.mit.edu	37	chr7	99319826	99319826	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctggcaagagcttcatcGcaagaggctctgggctgaga	15	9	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99319826	A	A	99319826	1	1	48	0	1	0	0	0	0	0	0	0	4214	1102	38	4		4	CYP3A7	7	99319826	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	318693	99319826	59818837	594	52181											
GATS	352954	broad.mit.edu	37	chr7	99869494	99869494	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggaaggcaagtttgatcAggcccgtaggtgaacagcgg	15	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99869494	G	G	99869494	3	3	48	1	0	0	0	0	1	0	0	0	6326	188	7	5	394	5	GATS	7	99869494	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	549668	99869494	59269169	595	52182											
PILRB	29990	broad.mit.edu	37	chr7	99950619	99950619	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcttgcctctgtgcccaGggctctctgtcccgccgact	10	16	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99950619	T	T	99950619	5	4	48	1	0	0	0	0	0	0	1	0	12021	1014	35	2		2	PILRB	7	99950619	Splice_Site	SNP	G	TCGA-17-Z015-01A-01W-0746-08	81125	99950619	59188044	596	52183											
ACTL6B	51412	broad.mit.edu	37	chr7	100252834	100252834	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaaaggccaagcccaaagGagggtcagtgagtccagctc	14	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100252834	T	T	100252834	1	4	48	0	1	0	0	0	0	0	0	0	199	1189	41	3		3	ACTL6B	7	100252834	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	302215	100252834	58885829	597	52184											
MUC17	140453	broad.mit.edu	37	chr7	100679879	100679879	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccacttctactgaagccCgttcatctcctacaacttct	4	15	4	2	rs71273404		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100679879	T	T	100679879	3	4	48	1	0	0	0	0	1	0	0	0	10068	652	23	4	5192	4	MUC17	7	100679879	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	427045	100679879	58458784	598	52185											
MUC17	140453	broad.mit.edu	37	chr7	100682595	100682595	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactcctagtgaagtaagtaCttcattaacaagtatacttg	6	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100682595	G	G	100682595	3	3	48	1	0	0	0	0	1	0	0	0	10068	565	20	4	7908	4	MUC17	7	100682595	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2716	100682595	58456068	599	52186											
MUC17	140453	broad.mit.edu	37	chr7	100695328	100695328	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaccccaggcattgcctGgagaccaaggtcatgggact	11	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100695328	A	A	100695328	1	1	48	0	1	0	0	0	0	0	0	0	10068	1363	47	4		4	MUC17	7	100695328	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	12733	100695328	58443335	600	52187											
LAMB4	22798	broad.mit.edu	37	chr7	107710115	107710115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaagcatttgtatggatGtcagtgcctcagtagagccc	10	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107710115	T	T	107710115	1	4	48	0	1	0	0	0	0	0	0	0	8685	1392	48	3		3	LAMB4	7	107710115	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	7014787	107710115	51428548	601	52188											
LAMB4	22798	broad.mit.edu	37	chr7	107746206	107746206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcatctatatatagcacCaggacagtgaaaggcaggta	10	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107746206	A	A	107746206	1	1	48	0	1	0	0	0	0	0	0	0	8685	609	21	2		2	LAMB4	7	107746206	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	36091	107746206	51392457	602	52189											
NRCAM	4897	broad.mit.edu	37	chr7	107790155	107790155	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatacccattttgaatgaAaaagtatgcactttgcattc	6	7	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107790155	C	C	107790155	1	2	48	0	1	0	0	0	0	0	0	0	10739	29	1	5		5	NRCAM	7	107790155	3'UTR	SNP	A	TCGA-17-Z015-01A-01W-0746-08	43949	107790155	51348508	603	52190											
NRCAM	4897	broad.mit.edu	37	chr7	107866017	107866017	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaaataaggttaaatagtCatggaggtgaagttagtgaa	12	1	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107866017	G	G	107866017	1	3	48	0	1	0	0	0	0	0	0	0	10739	841	29	4		4	NRCAM	7	107866017	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	75862	107866017	51272646	604	52191											
IFRD1	3475	broad.mit.edu	37	chr7	112090931	112090931	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagttgtagttctttctctGatgtacacatttgcatttcc	8	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112090931	T	T	112090931	1	4	48	0	1	0	0	0	0	0	0	0	7623	1305	45	3		3	IFRD1	7	112090931	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4224914	112090931	47047732	605	52192											
KCND2	3751	broad.mit.edu	37	chr7	120373105	120373105	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcaacgagcagacaaaCgaagggcacaaaaggtgcgt	12	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120373105	A	A	120373105	2	1	48	1	0	0	0	0	0	0	0	1	8089	528	19	3		3	KCND2	7	120373105	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	8282174	120373105	38765558	606	52193											
ING3	54556	broad.mit.edu	37	chr7	120607861	120607861	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaaatacattattcagttGacttaatgtacaagtgacat	5	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120607861	T	T	120607861	1	4	48	0	1	0	0	0	0	0	0	0	7807	1305	45	3		3	ING3	7	120607861	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	234756	120607861	38530802	607	52194											
PTPRZ1	5803	broad.mit.edu	37	chr7	121684623	121684623	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctagagaaacaattccagGtgagtcctcttggaagcctc	10	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121684623	T	T	121684623	5	4	48	1	0	0	0	0	0	0	1	0	12922	1275	44	3	6175	3	PTPRZ1	7	121684623	Splice_Site	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1076762	121684623	37454040	608	52195											
AASS	10157	broad.mit.edu	37	chr7	121733185	121733185	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgcaggccttggccacAagagggtgcaatacataagg	14	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121733185	C	C	121733185	2	2	48	1	0	0	0	0	0	0	0	1	24	117	5	5		5	AASS	7	121733185	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	48562	121733185	37405478	609	52196											
IQUB	154865	broad.mit.edu	37	chr7	123105155	123105156	+	Intron	DNP	CC	AA	AA													aacaaaccaaaatctacattCctaaagaaatgaaacattgt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	123105156	AA	AA	123105155	1	1	48	0	1	0	0	0	0	0	0	0	7890	870	30	3		3	IQUB	7	123105155	Intron	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	1371970	123105155	36033508	610	52197											
ASB15	142685	broad.mit.edu	37	chr7	123264718	123264718	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcgatggtcagcaatgcatGaagcagccaagcaaggccga	13	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123264718	T	T	123264718	4	4	48	1	0	0	0	0	0	1	0	0	1023	1291	45	3	565	3	ASB15	7	123264718	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	159563	123264718	35873945	611	52198											
SPAM1	6677	broad.mit.edu	37	chr7	123593576	123593576	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcagatattgggtaaacCaaagtgtgtaggaagaaata	11	4	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123593576	A	A	123593576	1	1	48	0	1	0	0	0	0	0	0	0	15102	609	21	2		2	SPAM1	7	123593576	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	328858	123593576	35545087	612	52199											
POT1	25913	broad.mit.edu	37	chr7	124464083	124464083	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgattatctgttccatttGtgacattgtatgacttgatg	8	5	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124464083	C	C	124464083	3	2	48	1	0	0	0	0	1	0	0	0	12355	1377	48	4	70	4	POT1	7	124464083	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	870507	124464083	34674580	613	52200											
GRM8	2918	broad.mit.edu	37	chr7	126085984	126085984	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttgtgagcaagtttgtaCtctgtagaacagccgctcat	9	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126085984	G	G	126085984	1	3	48	0	1	0	0	0	0	0	0	0	6869	580	20	4		4	GRM8	7	126085984	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1621901	126085984	33052679	614	52201											
GRM8	2918	broad.mit.edu	37	chr7	126173116	126173116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcattgaaagtctctgGgacacctctcgttttaatgg	10	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126173116	T	T	126173116	3	4	48	1	0	0	0	0	1	0	0	0	6869	1232	43	2	468	2	GRM8	7	126173116	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	87132	126173116	32965547	615	52202											
FLNC	2318	broad.mit.edu	37	chr7	128479978	128479978	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggccgtgggccactgccTgtgcctgggaggggttagaa	18	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128479978	G	G	128479978	1	3	48	0	1	0	0	0	0	0	0	0	5993	1595	55	5		5	FLNC	7	128479978	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2306862	128479978	30658685	616	52203											
PLXNA4	91584	broad.mit.edu	37	chr7	131829786	131829786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaggctctggccagccCttctcctggaggcccagagt	11	14	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131829786	A	A	131829786	1	1	48	0	1	0	0	0	0	0	0	0	12217	696	24	2		2	PLXNA4	7	131829786	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3349808	131829786	27308877	617	52204											
PLXNA4	91584	broad.mit.edu	37	chr7	132192419	132192419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccagggatttcattttcCgcttctggcccttggagaag	10	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132192419	A	A	132192419	3	1	48	1	0	0	0	0	1	0	0	0	12217	652	23	1	5088	1	PLXNA4	7	132192419	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	362633	132192419	26946244	618	52205											
NUP205	23165	broad.mit.edu	37	chr7	135323483	135323483	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactaagttgctatggttatGacatagctctccagcttggc	9	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135323483	T	T	135323483	1	4	48	0	1	0	0	0	0	0	0	0	10854	1305	45	3		3	NUP205	7	135323483	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3131064	135323483	23815180	619	52206											
HIPK2	28996	broad.mit.edu	37	chr7	139288933	139288933	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagttgctgccatgctggggGaagcaggatctgctgggtcc	16	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139288933	A	A	139288933	3	1	48	1	0	0	0	0	1	0	0	0	7184	1174	41	4	1471	4	HIPK2	7	139288933	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3965450	139288933	19849730	620	52207											
SLC37A3	84255	broad.mit.edu	37	chr7	140035027	140035027	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatcatcaacagtaattccTgtagtgtagaaaactagtgc	7	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140035027	A	A	140035027	1	1	48	0	1	0	0	0	0	0	0	0	14713	1595	55	5		5	SLC37A3	7	140035027	3'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	746094	140035027	19103636	621	52208											
DENND2A	27147	broad.mit.edu	37	chr7	140223132	140223132	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgtctaggggcccttcGtcctgctcacaagccagctc	10	17	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140223132	A	A	140223132	2	1	48	1	0	0	0	0	0	0	0	1	4469	1136	40	4		4	DENND2A	7	140223132	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	188105	140223132	18915531	622	52209											
CLEC5A	23601	broad.mit.edu	37	chr7	141643895	141643895	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggccactctgagctagaaCatttcaaataatttctttct	5	9	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141643895	G	G	141643895	1	3	48	0	1	0	0	0	0	0	0	0	3551	493	17	4		4	CLEC5A	7	141643895	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1420763	141643895	17494768	623	52210											
KEL	3792	broad.mit.edu	37	chr7	142661269	142661269	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtaggaatcagagtgagggGaaaaagctgactcaggattc	14	5	2	3	rs142896348		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142661269	T	T	142661269	1	4	48	0	1	0	0	0	0	0	0	0	8212	1189	41	3		3	KEL	7	142661269	5'Flank	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1017374	142661269	16477394	624	52211											
TAS2R40	259286	broad.mit.edu	37	chr7	142918956	142918956	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagcccaagacaaatgtAtctttatgaaaaattgagac	7	6	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142918956	G	G	142918956	1	3	48	0	1	0	0	0	0	0	0	0	15697	464	16	5		5	TAS2R40	7	142918956	5'Flank	SNP	A	TCGA-17-Z015-01A-01W-0746-08	257687	142918956	16219707	625	52212											
CLCN1	1180	broad.mit.edu	37	chr7	143020377	143020377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatctggcctctgaccccCgccccctcgctccccctctc	5	25	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143020377	A	A	143020377	1	1	48	0	1	0	0	0	0	0	0	0	3493	667	23	1		1	CLCN1	7	143020377	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	101421	143020377	16118286	626	52213											
OR2A2	442361	broad.mit.edu	37	chr7	143807167	143807167	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaaattctccttctaagGttgcccttctgtgggccccg	9	13	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143807167	A	A	143807167	2	1	48	1	0	0	0	0	0	0	0	1	11071	1252	44	4		4	OR2A2	7	143807167	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	786790	143807167	15331496	627	52214											
CNTNAP2	26047	broad.mit.edu	37	chr7	146984697	146984698	+	Intron	INS	-	G	G													aggtaacttcatcttgccccINSgtgacttacactcatgacat					rs147257062	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146984698	G	G	146984697	6	5	48	0	1	1	1	0	0	0	0	0	3679	667	23	0		0	CNTNAP2	7	146984697	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	3177530	146984697	12153966	628	52215											
CNTNAP2	26047	broad.mit.edu	37	chr7	146997190	146997190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaattgtgttcagctgGgtaattttaagataaaaatg	10	2	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146997190	T	T	146997190	1	4	48	0	1	0	0	0	0	0	0	0	3679	1247	43	2		2	CNTNAP2	7	146997190	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	12493	146997190	12141473	629	52216											
ZNF862	643641	broad.mit.edu	37	chr7	149559371	149559371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacctcttgctgtgagcGggggttcaaggccatgaacc	12	13	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149559371	A	A	149559371	3	1	48	1	0	0	0	0	1	0	0	0	18324	1116	39	4	3148	4	ZNF862	7	149559371	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2562181	149559371	9579292	630	52217											
GIMAP1	170575	broad.mit.edu	37	chr7	150417174	150417174	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcccggcaggagtccacgCggaggctcatccttgttggg	15	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150417174	T	T	150417174	3	4	48	1	0	0	0	0	1	0	0	0	6443	759	27	4	88	4	GIMAP1	7	150417174	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	857803	150417174	8721489	631	52218											
ABP1	26	broad.mit.edu	37	chr7	150554366	150554366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggacccgctgcctgggGgcaaggggcatgacagcaca	17	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150554366	T	T	150554366	3	4	48	1	0	0	0	0	1	0	0	0	98	1232	43	2	810	2	ABP1	7	150554366	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	137192	150554366	8584297	632	52219											
DPP6	1804	broad.mit.edu	37	chr7	153959213	153959213	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtgaaatatgaaggaaaGtgaaaattgaggataacttc	10	4	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153959213	A	A	153959213	1	1	48	0	1	0	0	0	0	0	0	0	4770	1044	36	4		4	DPP6	7	153959213	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3404847	153959213	5179450	633	52220											
HTR5A	3361	broad.mit.edu	37	chr7	154863018	154863018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgtgacggccatagccCtggaccgctactggtccatc	12	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154863018	A	A	154863018	3	1	48	1	0	0	0	0	1	0	0	0	7520	680	24	2	411	2	HTR5A	7	154863018	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	903805	154863018	4275645	634	52221											
HTR5A	3361	broad.mit.edu	37	chr7	154876139	154876139	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaccccctgatctataCggctttcaacaagaactaca	4	13	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154876139	G	G	154876139	3	3	48	1	0	0	0	0	1	0	0	0	7520	536	19	4	1022	4	HTR5A	7	154876139	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	13121	154876139	4262524	635	52222											
RBM33	155435	broad.mit.edu	37	chr7	155511072	155511072	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctaacacaaggggtttttCttgcagtgcccttgctacca	8	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155511072	G	G	155511072	1	3	48	0	1	0	0	0	0	0	0	0	13238	928	32	4		4	RBM33	7	155511072	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	634933	155511072	3627591	636	52223											
CSMD1	64478	broad.mit.edu	37	chr8	3046498	3046498	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagccgggggacaggattgTacctcttcgttgagtgaaat	14	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3046498	A	A	3046498	3	1	48	1	0	0	0	0	1	0	0	0	3978	1638	57	5	5404	5	CSMD1	8	3046498	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08		3046498	143317524	637	52224											
SOX7	83595	broad.mit.edu	37	chr8	10583458	10583458	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccccaggagttccacctgGctcagttgatccagggcgtc	11	15	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10583458	A	A	10583458	2	1	48	1	0	0	0	0	0	0	0	1	15070	1194	42	4		4	SOX7	8	10583458	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	7536960	10583458	135780564	638	52225											
SGCZ	137868	broad.mit.edu	37	chr8	13959702	13959702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgatctgcctgccttggcCtcccaaatatatacttcttg	7	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13959702	A	A	13959702	1	1	48	0	1	0	0	0	0	0	0	0	14317	696	24	2		2	SGCZ	8	13959702	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3376244	13959702	132404320	639	52226											
SGCZ	137868	broad.mit.edu	37	chr8	14720490	14720490	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataacttgtggccttccaAgttgaagggaaataagaagg	11	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14720490	C	C	14720490	1	2	48	0	1	0	0	0	0	0	0	0	14317	87	3	5		5	SGCZ	8	14720490	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	760788	14720490	131643532	640	52227											
PSD3	23362	broad.mit.edu	37	chr8	18662320	18662320	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgctgctggtaccattacTgagattttctggggtctcct	10	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18662320	A	A	18662320	3	1	48	1	0	0	0	0	1	0	0	0	12754	1580	55	5	1468	5	PSD3	8	18662320	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3941830	18662320	127701702	641	52228											
BMP1	649	broad.mit.edu	37	chr8	22051898	22051898	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtggggaaaagagctccCtagcagggcaaagcatgctg	16	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22051898	T	T	22051898	1	4	48	0	1	0	0	0	0	0	0	0	1462	696	24	4		4	BMP1	8	22051898	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3389578	22051898	124312124	642	52229											
NEFL	4747	broad.mit.edu	37	chr8	24812994	24812994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgccgcacctgcatagCgctgatgtcggcgttctgct	13	14	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24812994	T	T	24812994	3	4	48	1	0	0	0	0	1	0	0	0	10410	768	27	4	612	4	NEFL	8	24812994	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2761096	24812994	121551028	643	52230											
IDO2	169355	broad.mit.edu	37	chr8	39847362	39847362	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaggacagatgcatggtaaGatgcttccgaagctcctgaa	11	8	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39847362	C	C	39847362	1	2	48	0	1	0	0	0	0	0	0	0	7572	957	33	4		4	IDO2	8	39847362	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	15034368	39847362	106516660	644	52231											
ZMAT4	79698	broad.mit.edu	37	chr8	40720195	40720195	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtcctttgtagggacAtggatgaagctggaaaccat	11	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40720195	G	G	40720195	1	3	48	0	1	0	0	0	0	0	0	0	17820	232	8	5		5	ZMAT4	8	40720195	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	872833	40720195	105643827	645	52232											
ANK1	286	broad.mit.edu	37	chr8	41519229	41519229	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagagagctcataaagaggTgagtggagggaggtgtcatg	18	3	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41519229	A	A	41519229	1	1	48	0	1	0	0	0	0	0	0	0	620	1711	59	5		5	ANK1	8	41519229	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	799034	41519229	104844793	646	52233											
SNTG1	54212	broad.mit.edu	37	chr8	51363079	51363079	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcatctgcataacaaaaacAgtcaatgcattatcaattgt	4	8	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51363079	T	T	51363079	1	4	48	0	1	0	0	0	0	0	0	0	14988	203	7	5		5	SNTG1	8	51363079	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	9843850	51363079	95000943	647	52234											
PXDNL	137902	broad.mit.edu	37	chr8	52321170	52321170	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgcagctccgcgcccAcgatcttcctggcttcctgg	11	16	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52321170	T	T	52321170	3	4	48	1	0	0	0	0	1	0	0	0	12956	159	6	5	1405	5	PXDNL	8	52321170	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	958091	52321170	94042852	648	52235											
PCMTD1	115294	broad.mit.edu	37	chr8	52758276	52758276	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtttttccttggcatattCcaccacatctgaatgaagct	6	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52758276	A	A	52758276	4	1	48	1	0	0	0	0	0	1	0	0	11680	864	30	3	734	3	PCMTD1	8	52758276	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	437106	52758276	93605746	649	52236											
TOX	9760	broad.mit.edu	37	chr8	59764213	59764213	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattcaaaccaagttgagcaCttagctgtgactggttaatg	9	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59764213	T	T	59764213	3	4	48	1	0	0	0	0	1	0	0	0	16501	565	20	4	1041	4	TOX	8	59764213	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7005937	59764213	86599809	650	52237											
PREX2	80243	broad.mit.edu	37	chr8	69002766	69002766	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatatatcatacaaatgaatCttattcctgaaatttgtttt	3	5	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69002766	T	T	69002766	1	4	48	0	1	0	0	0	0	0	0	0	12583	928	32	4		4	PREX2	8	69002766	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9238553	69002766	77361256	651	52238											
PREX2	80243	broad.mit.edu	37	chr8	69032571	69032571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattgagaaaaacaaggtgGtagacaatatagtcatgaag	10	4	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69032571	T	T	69032571	1	4	48	0	1	0	0	0	0	0	0	0	12583	1276	44	3		3	PREX2	8	69032571	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	29805	69032571	77331451	652	52239											
ZFHX4	79776	broad.mit.edu	37	chr8	77767626	77767626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgagggaaacactgaaatGgaaagcaccacaggaagttc	12	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77767626	T	T	77767626	3	4	48	1	0	0	0	0	1	0	0	0	17761	1348	47	2	8503	2	ZFHX4	8	77767626	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8735055	77767626	68596396	653	52240											
FABP12	646486	broad.mit.edu	37	chr8	82441714	82441714	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtgatttcctcaaactcttCtcccagcttaaaggagatct	6	12	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82441714	G	G	82441714	3	3	48	1	0	0	0	0	1	0	0	0	5402	922	32	4	227	4	FABP12	8	82441714	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4674088	82441714	63922308	654	52241											
RALYL	138046	broad.mit.edu	37	chr8	85403834	85403834	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attctcaaaagtgattttgaGctgattttctcagaatttcc	6	7	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85403834	C	C	85403834	1	2	48	0	1	0	0	0	0	0	0	0	13128	986	34	4		4	RALYL	8	85403834	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2962120	85403834	60960188	655	52242											
PSKH2	85481	broad.mit.edu	37	chr8	87063291	87063292	+	Intron	INS	-	TTTG	TTTG													catgccaacttaactcagaaINStttgtttgtttgtttgtttt					rs111727263		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTTG	87063292	TTTG	TTTG	87063291	6	5	48	0	1	1	1	0	0	0	0	0	12771	116	4	0		0	PSKH2	8	87063291	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	1659457	87063291	59300731	656	52243											
FAM82B	51115	broad.mit.edu	37	chr8	87498840	87498840	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagctacatcacgtgatgccCgtgccaaacgccacagtaac	9	14	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87498840	G	G	87498840	3	3	48	1	0	0	0	0	1	0	0	0	5685	652	23	4	604	4	FAM82B	8	87498840	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	435549	87498840	58865182	657	52244											
CNGB3	54714	broad.mit.edu	37	chr8	87606749	87606749	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagccagccttgtctttgGcagcctcttggtccacttca	10	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87606749	C	C	87606749	1	2	48	0	1	0	0	0	0	0	0	0	3633	1218	42	4		4	CNGB3	8	87606749	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	107909	87606749	58757273	658	52245											
CNGB3	54714	broad.mit.edu	37	chr8	87755832	87755832	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctataggcttcaccttgttGacttttgtcagcgatttaaa	7	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87755832	T	T	87755832	2	4	48	1	0	0	0	0	0	0	0	1	3633	1277	45	3		3	CNGB3	8	87755832	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	149083	87755832	58608190	659	52246											
CNBD1	168975	broad.mit.edu	37	chr8	87878769	87878769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattttgtctcacatgacaGctattaacaatgtgcctcct	5	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87878769	T	T	87878769	3	4	48	1	0	0	0	0	1	0	0	0	3623	971	34	3	48	3	CNBD1	8	87878769	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	122937	87878769	58485253	660	52247											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885200	88885200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctcgtgtagcagtcctGgcccacggccgccacgactc	11	16	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885200	T	T	88885200	3	4	48	1	0	0	0	0	1	0	0	0	4305	1357	47	2	191	2	DCAF4L2	8	88885200	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1006431	88885200	57478822	661	52248											
MMP16	4325	broad.mit.edu	37	chr8	89179914	89179914	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaccatcatgattaggattTcctagtgtccatggctcatc	7	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89179914	C	C	89179914	2	2	48	1	0	0	0	0	0	0	0	1	9748	1770	62	5		5	MMP16	8	89179914	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	294714	89179914	57184108	662	52249											
CALB1	793	broad.mit.edu	37	chr8	91075233	91075233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagattgtctctatagtttGcagtactgtattttatactt	6	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91075233	T	T	91075233	1	4	48	0	1	0	0	0	0	0	0	0	2599	1334	46	3		3	CALB1	8	91075233	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1895319	91075233	55288789	663	52250											
SLC26A7	115111	broad.mit.edu	37	chr8	92407401	92407401	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctggcattttgcacaactTtttggttgtttagatcctac	8	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92407401	G	G	92407401	1	3	48	0	1	0	0	0	0	0	0	0	14636	1856	64	5		5	SLC26A7	8	92407401	3'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1332168	92407401	53956621	664	52251											
TMEM67	91147	broad.mit.edu	37	chr8	94777668	94777668	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccaacatttgttaataccAgcaggtcctgtgcatgttca	8	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94777668	T	T	94777668	3	4	48	1	0	0	0	0	1	0	0	0	16319	188	7	5	697	5	TMEM67	8	94777668	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2370267	94777668	51586354	665	52252											
KIAA1429	25962	broad.mit.edu	37	chr8	95523891	95523891	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgcagaactcgaataaacGtgtccattccttcagcagaa	7	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95523891	A	A	95523891	3	1	48	1	0	0	0	0	1	0	0	0	8301	1145	40	4	2628	4	KIAA1429	8	95523891	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	746223	95523891	50840131	666	52253											
KIAA1429	25962	broad.mit.edu	37	chr8	95541452	95541452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccttcttcttgttgttcCtcttctacttctccttcatc	2	15	7	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95541452	A	A	95541452	3	1	48	1	0	0	0	0	1	0	0	0	8301	680	24	2	4838	2	KIAA1429	8	95541452	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	17561	95541452	50822570	667	52254											
KCNS2	3788	broad.mit.edu	37	chr8	99441529	99441529	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggaatgaaggaggtcccttCggtcaatttaagggactatt	12	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99441529	A	A	99441529	4	1	48	1	0	0	0	0	0	1	0	0	8159	893	31	3	1324	3	KCNS2	8	99441529	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3900077	99441529	46922493	668	52255											
OSR2	116039	broad.mit.edu	37	chr8	99961221	99961221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcccatcccgctccaccCgtcgctgcagctcaccaatt	7	20	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99961221	A	A	99961221	3	1	48	1	0	0	0	0	1	0	0	0	11388	652	23	1	43	1	OSR2	8	99961221	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	519692	99961221	46402801	669	52256											
TM7SF4	81501	broad.mit.edu	37	chr8	105360972	105360972	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatagcggccgctgcctcCtggattatcacgtgtgttct	10	12	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105360972	T	T	105360972	2	4	48	1	0	0	0	0	0	0	0	1	16099	668	24	4		4	TM7SF4	8	105360972	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5399751	105360972	41003050	670	52257											
TM7SF4	81501	broad.mit.edu	37	chr8	105361102	105361102	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggcacagggatcgtcatcTtgggacacgtagaaaatatt	11	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105361102	A	A	105361102	3	1	48	1	0	0	0	0	1	0	0	0	16099	1606	56	5	324	5	TM7SF4	8	105361102	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	130	105361102	41002920	671	52258											
RSPO2	340419	broad.mit.edu	37	chr8	108913118	108913118	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctgccttcacagtctcCagattcaaatcaaagcataa	4	13	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108913118	T	T	108913118	1	4	48	0	1	0	0	0	0	0	0	0	13821	609	21	4		4	RSPO2	8	108913118	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3552016	108913118	37450904	672	52259											
RSPO2	340419	broad.mit.edu	37	chr8	108995951	108995951	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacaactaaaggctgaaaaGgccagacttctaaaaggtcc	8	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108995951	A	A	108995951	1	1	48	0	1	0	0	0	0	0	0	0	13821	1015	35	4		4	RSPO2	8	108995951	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	82833	108995951	37368071	673	52260											
TTC35	9694	broad.mit.edu	37	chr8	109453979	109453979	+	5'Flank	DEL	T	-	-													cgtcaagcaaccagactgggTtttgggaaggtttatcagtt					rs144246994		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109453979	-	-	109453979	6	5	48	0	1	1	0	1	0	0	0	0	16829	1740	60	0		0	TTC35	8	109453979	5'Flank	DEL	T	TCGA-17-Z015-01A-01W-0746-08	458028	109453979	36910043	674	52261											
PKHD1L1	93035	broad.mit.edu	37	chr8	110510782	110510782	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaactcactgctgctcatcGgagtcctagatctccatcag	8	13	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110510782	A	A	110510782	3	1	48	1	0	0	0	0	1	0	0	0	12067	1116	39	4	10953	4	PKHD1L1	8	110510782	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1056803	110510782	35853240	675	52262											
CSMD3	114788	broad.mit.edu	37	chr8	113243919	113243919	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccatagctatattttcccAgccttaataaatacacaatt	4	10	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113243919	G	G	113243919	1	3	48	0	1	0	0	0	0	0	0	0	3980	203	7	5		5	CSMD3	8	113243919	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2733137	113243919	33120103	676	52263											
CSMD3	114788	broad.mit.edu	37	chr8	113259218	113259218	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatataaattcttacccatGatagcattatttcttatcca	3	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113259218	T	T	113259218	1	4	48	0	1	0	0	0	0	0	0	0	3980	1305	45	3		3	CSMD3	8	113259218	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	15299	113259218	33104804	677	52264											
EXT1	2131	broad.mit.edu	37	chr8	118819684	118819684	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtcaacaaaacattaccttCtccccactaattcataatgc	2	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118819684	A	A	118819684	1	1	48	0	1	0	0	0	0	0	0	0	5366	928	32	3		3	EXT1	8	118819684	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5560466	118819684	27544338	678	52265											
NOV	4856	broad.mit.edu	37	chr8	120430556	120430556	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttacccttgcaggtgagaAactcaatatacctagggctg	9	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120430556	C	C	120430556	1	2	48	0	1	0	0	0	0	0	0	0	10648	29	1	5		5	NOV	8	120430556	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1610872	120430556	25933466	679	52266											
COL14A1	7373	broad.mit.edu	37	chr8	121238797	121238797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagtcttctacacccctgGgagatacttgggttttggct	11	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121238797	T	T	121238797	1	4	48	0	1	0	0	0	0	0	0	0	3703	1247	43	2		2	COL14A1	8	121238797	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	808241	121238797	25125225	680	52267											
COL14A1	7373	broad.mit.edu	37	chr8	121292451	121292451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaatattgacttccagtaCtgcttgttatatagacatta	6	6	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121292451	A	A	121292451	1	1	48	0	1	0	0	0	0	0	0	0	3703	580	20	3		3	COL14A1	8	121292451	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	53654	121292451	25071571	681	52268											
COL14A1	7373	broad.mit.edu	37	chr8	121295758	121295758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatctagttggtgttaatGgtggtcttttctgtttttcc	11	5	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121295758	T	T	121295758	1	4	48	0	1	0	0	0	0	0	0	0	3703	1363	47	2		2	COL14A1	8	121295758	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3307	121295758	25068264	682	52269											
FER1L6	654463	broad.mit.edu	37	chr8	124982158	124982158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgacaatcaattgatgatGtatatatattcatgcagcag	7	5	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124982158	A	A	124982158	1	1	48	0	1	0	0	0	0	0	0	0	5872	1392	48	4		4	FER1L6	8	124982158	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3686400	124982158	21381864	683	52270											
FER1L6	654463	broad.mit.edu	37	chr8	125022630	125022630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgatggtagctgttaataCctctccattgtagccatcta	7	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125022630	A	A	125022630	1	1	48	0	1	0	0	0	0	0	0	0	5872	522	18	3		3	FER1L6	8	125022630	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	40472	125022630	21341392	684	52271											
KHDRBS3	10656	broad.mit.edu	37	chr8	136657371	136657371	+	Intron	DEL	G	-	-													gattcctacggtgagtgactGgccagagcatgtgaagagag							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136657371	-	-	136657371	6	5	48	0	1	1	0	1	0	0	0	0	8218	1363	47	0		0	KHDRBS3	8	136657371	Intron	DEL	G	TCGA-17-Z015-01A-01W-0746-08	11634741	136657371	9706651	685	52272											
FAM135B	51059	broad.mit.edu	37	chr8	139255092	139255092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagcaaaaatctctgaagGggatgtttcaaagaagcatg	10	5	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139255092	T	T	139255092	1	4	48	0	1	0	0	0	0	0	0	0	5495	1247	43	2		2	FAM135B	8	139255092	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2597721	139255092	7108930	686	52273											
COL22A1	169044	broad.mit.edu	37	chr8	139872502	139872502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaatcgatttctcattcaGttctgtgtaagaggtgtcca	8	8	4	1	rs149984632	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139872502	T	T	139872502	1	4	48	0	1	0	0	0	0	0	0	0	3713	1044	36	3		3	COL22A1	8	139872502	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	617410	139872502	6491520	687	52274											
KCNK9	51305	broad.mit.edu	37	chr8	140630830	140630830	+	Missense_Mutation	SNP	C	G	G													gaccatgctgttgcggtttcCggcgagggatgccctctctt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140630830	G	G	140630830	3	3	48	1	0	0	0	0	1	0	0	0	8142	661	23	4	332	4	KCNK9	8	140630830	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	758328	140630830	5733192	688	52275	248	2									
KCNK9	51305	broad.mit.edu	37	chr8	140630832	140630832	+	Missense_Mutation	SNP	G	A	A													ccatgctgttgcggtttccgGcgagggatgccctctcttca							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140630832	A	A	140630832	3	1	48	1	0	0	0	0	1	0	0	0	8142	1203	42	4	334	4	KCNK9	8	140630832	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2	140630832	5733190	689	52276	248	2									
SCRIB	23513	broad.mit.edu	37	chr8	144891925	144891925	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtcaggcttcgacggagctCccgactcacaggctggccac	13	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144891925	A	A	144891925	1	1	48	0	1	0	0	0	0	0	0	0	14050	870	30	3		3	SCRIB	8	144891925	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4261093	144891925	1472097	690	52277											
PARP10	84875	broad.mit.edu	37	chr8	145058997	145058997	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgccccagcaaccccttAgaggtctccactgggcctgc	9	18	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145058997	T	T	145058997	2	4	48	1	0	0	0	0	0	0	0	1	11549	407	15	5		5	PARP10	8	145058997	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	167072	145058997	1305025	691	52278											
ZNF251	90987	broad.mit.edu	37	chr8	145947114	145947114	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcaggtttctctccaacaCgagtctgctgaggtggtgtg	13	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145947114	T	T	145947114	3	4	48	1	0	0	0	0	1	0	0	0	17922	536	19	4	88	4	ZNF251	8	145947114	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	888117	145947114	416908	692	52279											
GLDC	2731	broad.mit.edu	37	chr9	6556186	6556186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgccccgtctaggtagacCtgtcctccatgttgatggat	10	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6556186	A	A	6556186	3	1	48	1	0	0	0	0	1	0	0	0	6497	680	24	2	925	2	GLDC	9	6556186	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08		6556186	134657245	693	52280											
KDM4C	23081	broad.mit.edu	37	chr9	6984340	6984340	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacacagaagcatcttcagaAgaagagtcatctgctagcag	9	9	4	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6984340	G	G	6984340	2	3	48	1	0	0	0	0	0	0	0	1	8200	69	3	5		5	KDM4C	9	6984340	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	428154	6984340	134229091	694	52281											
TYRP1	7306	broad.mit.edu	37	chr9	12704747	12704747	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgcatgctcagctgggcgGattgtttagatggcatagtt	13	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12704747	T	T	12704747	1	4	48	0	1	0	0	0	0	0	0	0	16942	1189	41	3		3	TYRP1	9	12704747	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5720407	12704747	128508684	695	52282											
MPDZ	8777	broad.mit.edu	37	chr9	13125040	13125040	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagattgcctgcctaacagtCcagtactctttttccagaag	7	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13125040	A	A	13125040	1	1	48	0	1	0	0	0	0	0	0	0	9816	870	30	3		3	MPDZ	9	13125040	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	420293	13125040	128088391	696	52283											
IFNA14	3448	broad.mit.edu	37	chr9	21231729	21231729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggagattctctgcatttGgcccagaagagccaaggtgt	13	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21231729	T	T	21231729	1	4	48	0	1	0	0	0	0	0	0	0	7604	1363	47	2		2	IFNA14	9	21231729	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8106689	21231729	119981702	697	52284											
IFNA14	3448	broad.mit.edu	37	chr9	21231827	21231827	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtggcaaagcagcaggGccaccagtagaagcagtagg	14	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21231827	A	A	21231827	1	1	48	0	1	0	0	0	0	0	0	0	7604	1218	42	4		4	IFNA14	9	21231827	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	98	21231827	119981604	698	52285											
LINGO2	158038	broad.mit.edu	37	chr9	27991568	27991568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactggaggtggttgcccCcaaaaaggatatagacagaa	11	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27991568	A	A	27991568	1	1	48	0	1	0	0	0	0	0	0	0	8888	638	22	2		2	LINGO2	9	27991568	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6759741	27991568	113221863	699	52286											
LINGO2	158038	broad.mit.edu	37	chr9	27999278	27999278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataatcagaaagcatcaaCcacaaaaattataatggagg	6	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27999278	A	A	27999278	1	1	48	0	1	0	0	0	0	0	0	0	8888	522	18	3		3	LINGO2	9	27999278	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7710	27999278	113214153	700	52287											
LINGO2	158038	broad.mit.edu	37	chr9	28148448	28148448	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggaggtgagggcagaagaGcccagagaagcaacggaggt	18	6	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28148448	A	A	28148448	1	1	48	0	1	0	0	0	0	0	0	0	8888	986	34	4		4	LINGO2	9	28148448	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	149170	28148448	113064983	701	52288											
ARID3C	138715	broad.mit.edu	37	chr9	34622422	34622422	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccataggccccatcagcaCagctctcttctctgggggct	10	15	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34622422	T	T	34622422	3	4	48	1	0	0	0	0	1	0	0	0	920	478	17	4	279	4	ARID3C	9	34622422	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6473974	34622422	106591009	702	52289											
TLN1	7094	broad.mit.edu	37	chr9	35699910	35699910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcagggtgcgaggcctgCaggaagagggctgtgtattc	17	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35699910	A	A	35699910	1	1	48	0	1	0	0	0	0	0	0	0	16070	725	25	3		3	TLN1	9	35699910	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1077488	35699910	105513521	703	52290											
CCIN	881	broad.mit.edu	37	chr9	36171016	36171016	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgaccacctcagtgcctgTcttgcccaacagctgcccct	8	18	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36171016	C	C	36171016	3	2	48	1	0	0	0	0	1	0	0	0	2906	1667	58	5	1519	5	CCIN	9	36171016	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	471106	36171016	105042415	704	52291											
FRMPD1	22844	broad.mit.edu	37	chr9	37744267	37744267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagatcaggattgaacttgCtcaaggttacacagcctagc	11	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37744267	A	A	37744267	1	1	48	0	1	0	0	0	0	0	0	0	6117	812	28	3		3	FRMPD1	9	37744267	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1573251	37744267	103469164	705	52292											
ALDH1B1	219	broad.mit.edu	37	chr9	38396745	38396745	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaagaatccatctacaatGagtttctcgagagaaccgtg	10	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38396745	T	T	38396745	4	4	48	1	0	0	0	0	0	1	0	0	493	1291	45	3	1002	3	ALDH1B1	9	38396745	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	652478	38396745	102816686	706	52293											
FAM75A6	389730	broad.mit.edu	37	chr9	43626714	43626715	+	Missense_Mutation	DNP	TG	CT	CT													ggcacaggtccctctctagcTggaacttcaccttctgtgcc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	43626715	CT	CT	43626714	3	2	48	1	0	0	0	0	1	0	0	0	5674	1580	55	5	2062	5	FAM75A6	9	43626714	Missense_Mutation	DNP	TG	TCGA-17-Z015-01A-01W-0746-08	5229969	43626714	97586717	707	52294											
CBWD3	445571	broad.mit.edu	37	chr9	70490098	70490098	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggcacgtccctacctcagcTgaaccgctgggaccaacacg	10	17	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70490098	A	A	70490098	1	1	48	0	1	0	0	0	0	0	0	0	2740	1595	55	5		5	CBWD3	9	70490098	5'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	26863384	70490098	70723333	708	52295											
FXN	2395	broad.mit.edu	37	chr9	71687583	71687583	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtactcccacgacggcGtgtccctccatgagctgctg	13	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71687583	A	A	71687583	3	1	48	1	0	0	0	0	1	0	0	0	6174	1145	40	4	564	4	FXN	9	71687583	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1197485	71687583	69525848	709	52296											
GDA	9615	broad.mit.edu	37	chr9	74837977	74837977	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatgtctttaatccatcttGagttaatttttgtatatgat	5	4	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74837977	C	C	74837977	1	2	48	0	1	0	0	0	0	0	0	0	6369	1305	45	4		4	GDA	9	74837977	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3150394	74837977	66375454	710	52297											
TRPM6	140803	broad.mit.edu	37	chr9	77403430	77403430	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctgtcttcccccacccttGacatgtccattttcatcacc	3	18	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77403430	A	A	77403430	1	1	48	0	1	0	0	0	0	0	0	0	16715	1305	45	4		4	TRPM6	9	77403430	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2565453	77403430	63810001	711	52298											
TRPM6	140803	broad.mit.edu	37	chr9	77403702	77403702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgtgagtgagagcaagCatggagcatgccaaggagac	15	7	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77403702	A	A	77403702	1	1	48	0	1	0	0	0	0	0	0	0	16715	725	25	3		3	TRPM6	9	77403702	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	272	77403702	63809729	712	52299											
FAM75C1	441452	broad.mit.edu	37	chr9	90536927	90536927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagacacctgcgaatctgGggctggctcaaaagttgagg	13	10	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90536927	T	T	90536927	3	4	48	1	0	0	0	0	1	0	0	0	5676	1232	43	2	2119	2	FAM75C1	9	90536927	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	13133225	90536927	50676504	713	52300											
ASPN	54829	broad.mit.edu	37	chr9	95227369	95227369	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtatataaaggaaactcaCagtgcagagagacacatccc	8	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95227369	T	T	95227369	1	4	48	0	1	0	0	0	0	0	0	0	1061	493	17	4		4	ASPN	9	95227369	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4690442	95227369	45986062	714	52301											
PTPDC1	138639	broad.mit.edu	37	chr9	96857587	96857588	+	Intron	INS	-	T	T													ttgattttcttttccttttcINSttttttcctagtttacttct							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96857588	T	T	96857587	6	5	48	0	1	1	1	0	0	0	0	0	12879	928	32	0		0	PTPDC1	9	96857587	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	1630218	96857587	44355844	715	52302											
PTCH1	5727	broad.mit.edu	37	chr9	98244371	98244371	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttaggttaaggcacactaCtggggtgttcctgagaaatt	12	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98244371	A	A	98244371	1	1	48	0	1	0	0	0	0	0	0	0	12836	580	20	3		3	PTCH1	9	98244371	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1386784	98244371	42969060	716	52303											
C9orf102	375748	broad.mit.edu	37	chr9	98643717	98643717	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtctcactaactagatAgtgaagtcctcaaagttgag	9	7	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98643717	T	T	98643717	1	4	48	0	1	0	0	0	0	0	0	0	2471	435	15	5		5	C9orf102	9	98643717	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	399346	98643717	42569714	717	52304											
HEMGN	55363	broad.mit.edu	37	chr9	100689761	100689761	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgggtttttctttcatttCtgtaaaatcaaataaaataa	4	4	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100689761	A	A	100689761	1	1	48	0	1	0	0	0	0	0	0	0	7117	927	32	3		3	HEMGN	9	100689761	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2046044	100689761	40523670	718	52305											
ANP32B	10541	broad.mit.edu	37	chr9	100767181	100767181	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctagaattttacctcttcaAgagatggatttgttacttat	6	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100767181	G	G	100767181	1	3	48	0	1	0	0	0	0	0	0	0	706	87	3	5		5	ANP32B	9	100767181	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	77420	100767181	40446250	719	52306											
NR4A3	8013	broad.mit.edu	37	chr9	102595773	102595773	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgctttcaaatgaatgatCagggtctctatttatggcta	8	8	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102595773	T	T	102595773	1	4	48	0	1	0	0	0	0	0	0	0	10729	827	29	4		4	NR4A3	9	102595773	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1828592	102595773	38617658	720	52307											
GRIN3A	116443	broad.mit.edu	37	chr9	104390432	104390432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattacttaacacaacgtgGgtatattcatctgtcatttt	6	7	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104390432	T	T	104390432	1	4	48	0	1	0	0	0	0	0	0	0	6849	1247	43	2		2	GRIN3A	9	104390432	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1794659	104390432	36822999	721	52308											
GRIN3A	116443	broad.mit.edu	37	chr9	104432502	104432502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggtttgatggccactGttctgccaaacaagagggca	13	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104432502	T	T	104432502	3	4	48	1	0	0	0	0	1	0	0	0	6849	1377	48	3	1183	3	GRIN3A	9	104432502	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	42070	104432502	36780929	722	52309											
SVEP1	79987	broad.mit.edu	37	chr9	113168917	113168917	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagccattggagaggcacCttcttgatgaatttccatgg	12	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113168917	G	G	113168917	3	3	48	1	0	0	0	0	1	0	0	0	15538	681	24	4	1796	4	SVEP1	9	113168917	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	8736415	113168917	28044514	723	52310											
SVEP1	79987	broad.mit.edu	37	chr9	113213737	113213737	+	Intron	SNP	C	A	A													acttgacagaactttaagacCaatagtttccaagcaagttg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113213737	A	A	113213737	1	1	48	0	1	0	0	0	0	0	0	0	15538	609	21	2		2	SVEP1	9	113213737	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	44820	113213737	27999694	724	52311	249	2									
SVEP1	79987	broad.mit.edu	37	chr9	113213739	113213739	+	Intron	SNP	A	T	T													ttgacagaactttaagaccaAtagtttccaagcaagttgtt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113213739	T	T	113213739	1	4	48	0	1	0	0	0	0	0	0	0	15538	116	4	5		5	SVEP1	9	113213739	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2	113213739	27999692	725	52312	249	2									
LPAR1	1902	broad.mit.edu	37	chr9	113704157	113704157	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaacagtcagtctccgagTattgggtcctgtgttgaaca	11	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113704157	C	C	113704157	3	2	48	1	0	0	0	0	1	0	0	0	8991	1638	57	5	765	5	LPAR1	9	113704157	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	490418	113704157	27509274	726	52313											
COL27A1	85301	broad.mit.edu	37	chr9	117063836	117063836	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctctccctccggacctcCgtcatcccgtctgtgccaga	7	18	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117063836	T	T	117063836	1	4	48	0	1	0	0	0	0	0	0	0	3717	667	23	4		4	COL27A1	9	117063836	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3359679	117063836	24149595	727	52314											
DEC1	50514	broad.mit.edu	37	chr9	118162849	118162849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccccatgacctaatcaCttcttaaagaccacacctct	4	15	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118162849	A	A	118162849	1	1	48	0	1	0	0	0	0	0	0	0	4414	580	20	3		3	DEC1	9	118162849	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1099013	118162849	23050582	728	52315											
DEC1	50514	broad.mit.edu	37	chr9	118163341	118163342	+	Intron	DNP	GG	TT	TT													gaaacacaccaaggttcccaGggaggctctgaacaactctt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	118163342	TT	TT	118163341	1	4	48	0	1	0	0	0	0	0	0	0	4414	1015	35	2		2	DEC1	9	118163341	Intron	DNP	GG	TCGA-17-Z015-01A-01W-0746-08	492	118163341	23050090	729	52316											
ASTN2	23245	broad.mit.edu	37	chr9	119582901	119582901	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacagagactcacccgcaGaacatgaagatggtgctcga	13	10	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119582901	T	T	119582901	3	4	48	1	0	0	0	0	1	0	0	0	1069	933	33	3	2097	3	ASTN2	9	119582901	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1419560	119582901	21630530	730	52317											
ASTN2	23245	broad.mit.edu	37	chr9	120062088	120062088	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatgggtgaatgggtgaatgGatggaccacagtcattctga	15	5	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120062088	C	C	120062088	1	2	48	0	1	0	0	0	0	0	0	0	1069	1189	41	4		4	ASTN2	9	120062088	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	479187	120062088	21151343	731	52318											
DBC1	1620	broad.mit.edu	37	chr9	122017692	122017692	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatcccactgggggagccaGaggtgggagggcagatgatg	18	9	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122017692	T	T	122017692	1	4	48	0	1	0	0	0	0	0	0	0	4280	957	33	3		3	DBC1	9	122017692	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1955604	122017692	19195739	732	52319											
DENND1A	57706	broad.mit.edu	37	chr9	126288472	126288472	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacatatgcGtacacacacccccatgcctg	4	18	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126288472	A	A	126288472	1	1	48	0	1	0	0	0	0	0	0	0	4466	1160	40	4		4	DENND1A	9	126288472	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4270780	126288472	14924959	733	52320											
GARNL3	84253	broad.mit.edu	37	chr9	130116205	130116205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaccctggaccttctgGttctcagagcagacaaaggt	11	10	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130116205	T	T	130116205	3	4	48	1	0	0	0	0	1	0	0	0	6303	1261	44	3	1694	3	GARNL3	9	130116205	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3827733	130116205	11097226	734	52321											
GLE1	2733	broad.mit.edu	37	chr9	131271368	131271368	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccctgcaacaccaaatGgaaccaaggtaaggttgtga	9	12	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131271368	T	T	131271368	4	4	48	1	0	0	0	0	0	1	0	0	6499	1349	47	2	319	2	GLE1	9	131271368	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1155163	131271368	9942063	735	52322											
METTL11A	28989	broad.mit.edu	37	chr9	132397704	132397704	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggcaggagaacctcccCgatgagatctaccatgtcta	11	11	2	3	rs151072869		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132397704	T	T	132397704	2	4	48	1	0	0	0	0	0	0	0	1	9588	639	23	4		4	METTL11A	9	132397704	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1126336	132397704	8815727	736	52323											
SETX	23064	broad.mit.edu	37	chr9	135205501	135205501	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaaacgcagtggtaggaAgcttggcacatttgacgacg	14	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135205501	G	G	135205501	3	3	48	1	0	0	0	0	1	0	0	0	14254	72	3	5	6617	5	SETX	9	135205501	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2807797	135205501	6007930	737	52324											
DBH	1621	broad.mit.edu	37	chr9	136501612	136501612	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtggccgcactgcagggctCggctccccgtgagagccccc	15	17	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136501612	A	A	136501612	4	1	48	1	0	0	0	0	0	1	0	0	4283	893	31	3	121	3	DBH	9	136501612	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1296111	136501612	4711819	738	52325											
MAN1B1	11253	broad.mit.edu	37	chr9	139996607	139996607	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcgtgcaggtcggtgctgTtacacacattcctgctgttg	13	10	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139996607	G	G	139996607	1	3	48	0	1	0	0	0	0	0	0	0	9304	1740	60	5		5	MAN1B1	9	139996607	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3494995	139996607	1216824	739	52326											
ITIH5	80760	broad.mit.edu	37	chr10	7657932	7657932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaataaatgggcggttGgcactcactcacctgccgga	13	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7657932	T	T	7657932	1	4	48	0	1	0	0	0	0	0	0	0	7977	1363	47	2		2	ITIH5	10	7657932	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08		7657932	127876815	740	52327											
ITGA8	8516	broad.mit.edu	37	chr10	15760935	15760935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtcactctttgggcgcCacaaaaccgtgcgcatgcaa	10	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15760935	A	A	15760935	1	1	48	0	1	0	0	0	0	0	0	0	7952	609	21	2		2	ITGA8	10	15760935	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	8103003	15760935	119773812	741	52328											
SLC39A12	221074	broad.mit.edu	37	chr10	18284617	18284617	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattcacaggcagctgaaatGcctataggcagtatgacagc	11	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18284617	C	C	18284617	3	2	48	1	0	0	0	0	1	0	0	0	14729	1319	46	4	1600	4	SLC39A12	10	18284617	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2523682	18284617	117250130	742	52329											
PLXDC2	84898	broad.mit.edu	37	chr10	20534306	20534306	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtgcagctgagaagaaaGggggaaccctccacgctggc	14	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20534306	A	A	20534306	3	1	48	1	0	0	0	0	1	0	0	0	12213	1000	35	4	1395	4	PLXDC2	10	20534306	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2249689	20534306	115000441	743	52330											
NEBL	10529	broad.mit.edu	37	chr10	21147150	21147150	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaaggcaactacggttgcCgctagatgaaccacttacgc	9	13	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21147150	G	G	21147150	1	3	48	0	1	0	0	0	0	0	0	0	10398	667	23	4		4	NEBL	10	21147150	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	612844	21147150	114387597	744	52331											
MYO3A	53904	broad.mit.edu	37	chr10	26305791	26305791	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacccggcaccgtcggaacaCatccgtaggaacaccgtttt	9	14	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26305791	T	T	26305791	3	4	48	1	0	0	0	0	1	0	0	0	10170	478	17	4	569	4	MYO3A	10	26305791	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5158641	26305791	109228956	745	52332											
MYO3A	53904	broad.mit.edu	37	chr10	26409803	26409803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccataagtatcacataaGgaccatttcaagcaattgtg	6	8	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26409803	T	T	26409803	1	4	48	0	1	0	0	0	0	0	0	0	10170	1015	35	2		2	MYO3A	10	26409803	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	104012	26409803	109124944	746	52333											
MYO3A	53904	broad.mit.edu	37	chr10	26436439	26436439	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctacttttgaggtcatcCgacaacagtgtaattaggca	10	8	1	1	rs150600683		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26436439	T	T	26436439	2	4	48	1	0	0	0	0	0	0	0	1	10170	639	23	4		4	MYO3A	10	26436439	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	26636	26436439	109098308	747	52334											
GAD2	2572	broad.mit.edu	37	chr10	26508009	26508009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggagaaaggcccactttGgcgtttctgcaagatgttat	12	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26508009	T	T	26508009	3	4	48	1	0	0	0	0	1	0	0	0	6240	1339	47	2	338	2	GAD2	10	26508009	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	71570	26508009	109026738	748	52335											
ZEB1	6935	broad.mit.edu	37	chr10	31815884	31815884	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctccctcacagggcgactcgGacgagagagagagtttgaca	13	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31815884	C	C	31815884	3	2	48	1	0	0	0	0	1	0	0	0	17749	1174	41	4	3115	4	ZEB1	10	31815884	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5307875	31815884	103718863	749	52336											
ZNF248	57209	broad.mit.edu	37	chr10	38121256	38121256	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccccccatgtgtactatttGatgttttaagagagctgact	8	9	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38121256	C	C	38121256	3	2	48	1	0	0	0	0	1	0	0	0	17919	1299	45	4	716	4	ZNF248	10	38121256	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6305372	38121256	97413491	750	52337											
AGAP4	119016	broad.mit.edu	37	chr10	46322003	46322003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacacagtgggcgttcccaCgcatgttttggatcgactgc	11	13	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46322003	A	A	46322003	3	1	48	1	0	0	0	0	1	0	0	0	370	536	19	3	643	3	AGAP4	10	46322003	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	8200747	46322003	89212744	751	52338											
CHAT	1103	broad.mit.edu	37	chr10	50824265	50824265	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtggatttggattgcCccagggtggtcagctggcct	15	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50824265	T	T	50824265	1	4	48	0	1	0	0	0	0	0	0	0	3344	638	22	4		4	CHAT	10	50824265	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4502262	50824265	84710482	752	52339											
MSMB	4477	broad.mit.edu	37	chr10	51556783	51556784	+	Frame_Shift_Ins	INS	-	T	T													caaaggaaacaaacacccaaINStaaactcggagtggcagact							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51556784	T	T	51556783	7	5	48	1	0	1	1	0	0	0	0	0	9977	101	4	0	152	0	MSMB	10	51556783	Frame_Shift_Ins	INS	-	TCGA-17-Z015-01A-01W-0746-08	732518	51556783	83977964	753	52340											
AGAP6	414189	broad.mit.edu	37	chr10	51770011	51770011	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggaaaaataaggataactCagaatttcaaaaggaaatca	8	4	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51770011	T	T	51770011	1	4	48	0	1	0	0	0	0	0	0	0	372	841	29	4		4	AGAP6	10	51770011	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	213228	51770011	83764736	754	52341											
SGMS1	259230	broad.mit.edu	37	chr10	52066855	52066855	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcatcttctctcatggagTtcttagcacttcggacaatt	8	10	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52066855	C	C	52066855	1	2	48	0	1	0	0	0	0	0	0	0	14327	1740	60	5		5	SGMS1	10	52066855	3'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	296844	52066855	83467892	755	52342											
PRKG1	5592	broad.mit.edu	37	chr10	53781121	53781121	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtgtgaggtagagtctTgggccattcaaaggtatctg	16	5	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53781121	G	G	53781121	1	3	48	0	1	0	0	0	0	0	0	0	12628	1827	63	5		5	PRKG1	10	53781121	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1714266	53781121	81753626	756	52343											
FAM13C	220965	broad.mit.edu	37	chr10	61068298	61068298	+	Intron	DEL	C	-	-													cagcatcacccccatcatcaCccccaccaccaccaccagca							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61068298	-	-	61068298	6	5	48	0	1	1	0	1	0	0	0	0	5500	522	18	0		0	FAM13C	10	61068298	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	7287177	61068298	74466449	757	52344											
CTNNA3	29119	broad.mit.edu	37	chr10	69281660	69281660	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttcccaagcttctggtaGgttttctggaggtcagattt	10	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69281660	A	A	69281660	2	1	48	1	0	0	0	0	0	0	0	1	4048	987	35	4		4	CTNNA3	10	69281660	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8213362	69281660	66253087	758	52345											
COL13A1	1305	broad.mit.edu	37	chr10	71716831	71716831	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attggtgtgcactggggctcCgttctcagcagtgccataaa	12	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71716831	T	T	71716831	1	4	48	0	1	0	0	0	0	0	0	0	3702	667	23	4		4	COL13A1	10	71716831	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2435171	71716831	63817916	759	52346											
CDH23	64072	broad.mit.edu	37	chr10	73200551	73200551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgatgtggcatcccccaGggccatagcatccccagaga	11	15	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73200551	T	T	73200551	1	4	48	0	1	0	0	0	0	0	0	0	3138	1015	35	2		2	CDH23	10	73200551	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1483720	73200551	62334196	760	52347											
CDH23	64072	broad.mit.edu	37	chr10	73498249	73498249	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtctctgaccacgttcacCctcaggtctacatcactgtg	8	14	5	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73498249	G	G	73498249	1	3	48	0	1	0	0	0	0	0	0	0	3138	638	22	4		4	CDH23	10	73498249	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	297698	73498249	62036498	761	52348											
TTC18	118491	broad.mit.edu	37	chr10	75072377	75072377	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtgatggccaatatcccGgaacaagctcaataaacatt	7	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75072377	A	A	75072377	3	1	48	1	0	0	0	0	1	0	0	0	16811	1115	39	4	2290	4	TTC18	10	75072377	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1574128	75072377	60462370	762	52349											
MYST4	23522	broad.mit.edu	37	chr10	76784747	76784747	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaaagaagaaaaggggtcGtaaacgcaggaggatcaaca	12	6	1	2	rs138617006	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76784747	A	A	76784747	3	1	48	1	0	0	0	0	1	0	0	0	10199	1145	40	4	3462	4	MYST4	10	76784747	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1712370	76784747	58750000	763	52350											
C10orf11	83938	broad.mit.edu	37	chr10	77818332	77818332	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaagttccagaagaccggAtggtgtggattcttgaagat	12	6	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77818332	T	T	77818332	1	4	48	0	1	0	0	0	0	0	0	0	1593	348	12	5		5	C10orf11	10	77818332	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1033585	77818332	57716415	764	52351											
DLG5	9231	broad.mit.edu	37	chr10	79580869	79580869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgagcaggaatcactactgGagcaagcttcggccgaaaac	11	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79580869	T	T	79580869	3	4	48	1	0	0	0	0	1	0	0	0	4598	1174	41	3	2458	3	DLG5	10	79580869	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1762537	79580869	55953878	765	52352											
NRG3	10718	broad.mit.edu	37	chr10	84447545	84447545	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggaagctggtccccacatCttcaactcaccttacagcca	6	15	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84447545	A	A	84447545	1	1	48	0	1	0	0	0	0	0	0	0	10744	928	32	3		3	NRG3	10	84447545	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4866676	84447545	51087202	766	52353											
RNLS	55328	broad.mit.edu	37	chr10	90074095	90074095	+	Intron	SNP	C	A	A													atttatgtgttgggcaaacaCatatttgctccaaggatcac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90074095	A	A	90074095	1	1	48	0	1	0	0	0	0	0	0	0	13616	493	17	3		3	RNLS	10	90074095	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5626550	90074095	45460652	767	52354	250	2									
RNLS	55328	broad.mit.edu	37	chr10	90074097	90074097	+	Intron	SNP	T	A	A													ttatgtgttgggcaaacacaTatttgctccaaggatcacat							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90074097	A	A	90074097	1	1	48	0	1	0	0	0	0	0	0	0	13616	1421	49	5		5	RNLS	10	90074097	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2	90074097	45460650	768	52355	250	2									
ANKRD1	27063	broad.mit.edu	37	chr10	92679871	92679871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccttccctgacatttcCattccctaccccagccccaa	2	20	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92679871	T	T	92679871	1	4	48	0	1	0	0	0	0	0	0	0	637	609	21	4		4	ANKRD1	10	92679871	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2605774	92679871	42854876	769	52356											
HECTD2	143279	broad.mit.edu	37	chr10	93260329	93260329	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatatgcatgctctgcagaGaagtactcagtatgatggct	12	7	2	2	rs111679609		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93260329	C	C	93260329	3	2	48	1	0	0	0	0	1	0	0	0	7107	942	33	4	2119	4	HECTD2	10	93260329	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	580458	93260329	42274418	770	52357											
TNKS2	80351	broad.mit.edu	37	chr10	93611069	93611069	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaaactaattaaaggagtcGagagacttatctccggacaa	8	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93611069	C	C	93611069	3	2	48	1	0	0	0	0	1	0	0	0	16444	1059	37	4	2873	4	TNKS2	10	93611069	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	350740	93611069	41923678	771	52358											
KIF11	3832	broad.mit.edu	37	chr10	94373192	94373192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgttgataagagagctcGggaagctggaaatataaatc	12	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94373192	T	T	94373192	3	4	48	1	0	0	0	0	1	0	0	0	8342	1116	39	1	878	1	KIF11	10	94373192	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	762123	94373192	41161555	772	52359											
CYP26A1	1592	broad.mit.edu	37	chr10	94836521	94836521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttcttccctatgctGtggctgcaattcttatgctt	6	12	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94836521	T	T	94836521	1	4	48	0	1	0	0	0	0	0	0	0	4188	1392	48	3		3	CYP26A1	10	94836521	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	463329	94836521	40698226	773	52360											
CRTAC1	55118	broad.mit.edu	37	chr10	99655247	99655247	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagggagccagggaggacGggagggggagagggagaaga	24	4	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99655247	A	A	99655247	1	1	48	0	1	0	0	0	0	0	0	0	3928	1131	39	4		4	CRTAC1	10	99655247	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4818726	99655247	35879500	774	52361											
PYROXD2	84795	broad.mit.edu	37	chr10	100146712	100146712	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catagttgtcaaggcagaggGccacaatcctggtgaccttc	11	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100146712	A	A	100146712	1	1	48	0	1	0	0	0	0	0	0	0	12975	1218	42	4		4	PYROXD2	10	100146712	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	491465	100146712	35388035	775	52362											
ABCC2	1244	broad.mit.edu	37	chr10	101604247	101604247	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggagtgaaggaaggcctgGatgggaggccttgtgatcaa	18	5	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101604247	A	A	101604247	1	1	48	0	1	0	0	0	0	0	0	0	53	1189	41	4		4	ABCC2	10	101604247	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1457535	101604247	33930500	776	52363											
PAX2	5076	broad.mit.edu	37	chr10	102533825	102533825	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagggacagagagtgaaacAcagagaaaagaatggggaag	16	3	0	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102533825	C	C	102533825	1	2	48	0	1	0	0	0	0	0	0	0	11573	174	6	5		5	PAX2	10	102533825	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	929578	102533825	33000922	777	52364											
SFXN3	81855	broad.mit.edu	37	chr10	102798282	102798282	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccttgggagaaagaaaacGgccacaggtctaagggctcc	13	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102798282	A	A	102798282	1	1	48	0	1	0	0	0	0	0	0	0	14309	1131	39	4		4	SFXN3	10	102798282	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	264457	102798282	32736465	778	52365											
C10orf76	79591	broad.mit.edu	37	chr10	103649278	103649278	+	Intron	DEL	C	-	-													gaattcgtattaatatggtgCcagatagaagaggtggatac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103649278	-	-	103649278	6	5	48	0	1	1	0	1	0	0	0	0	1627	754	26	0		0	C10orf76	10	103649278	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	850996	103649278	31885469	779	52366											
CALHM1	255022	broad.mit.edu	37	chr10	105215148	105215148	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtttgcatttgtgccagctCgtgagcagcctgttcatggt	13	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105215148	A	A	105215148	2	1	48	1	0	0	0	0	0	0	0	1	2608	871	31	3		3	CALHM1	10	105215148	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1565870	105215148	30319599	780	52367											
SORCS3	22986	broad.mit.edu	37	chr10	106802914	106802914	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatccacacactcattactTcttagataaagaattatcaa	2	10	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106802914	A	A	106802914	1	1	48	0	1	0	0	0	0	0	0	0	15046	1798	62	5		5	SORCS3	10	106802914	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1587766	106802914	28731833	781	52368											
SORCS1	114815	broad.mit.edu	37	chr10	108489683	108489683	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcacccctgcaaccccaaaTcctcagaaaccacacatcca	3	19	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108489683	A	A	108489683	1	1	48	0	1	0	0	0	0	0	0	0	15044	1450	50	5		5	SORCS1	10	108489683	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1686769	108489683	27045064	782	52369											
NRAP	4892	broad.mit.edu	37	chr10	115364594	115364594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctggcccatgcgccggCagtgctggatccgggggtcg	18	13	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115364594	A	A	115364594	3	1	48	1	0	0	0	0	1	0	0	0	10733	710	25	3	1223	3	NRAP	10	115364594	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6874911	115364594	20170153	783	52370											
NRAP	4892	broad.mit.edu	37	chr10	115380512	115380513	+	Intron	DNP	TG	GT	GT													aaaaagcaggccattgttggTgcacagacatttaaagggct							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	115380513	GT	GT	115380512	1	3	48	0	1	0	0	0	0	0	0	0	10733	1711	59	5		5	NRAP	10	115380512	Intron	DNP	TG	TCGA-17-Z015-01A-01W-0746-08	15918	115380512	20154235	784	52371											
DCLRE1A	9937	broad.mit.edu	37	chr10	115609684	115609684	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatcataaggcaaagtacTctcattattttgagaaatag	7	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115609684	A	A	115609684	3	1	48	1	0	0	0	0	1	0	0	0	4327	1551	54	5	1974	5	DCLRE1A	10	115609684	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	229172	115609684	19925063	785	52372											
GRK5	2869	broad.mit.edu	37	chr10	121207709	121207709	+	Frame_Shift_Del	DEL	C	-	-													gaggtcaagagacaccccttCttcaggaacatgaacttcaa							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121207709	-	-	121207709	7	5	48	1	0	1	0	1	0	0	0	0	6858	912	32	0	1391	0	GRK5	10	121207709	Frame_Shift_Del	DEL	C	TCGA-17-Z015-01A-01W-0746-08	5598025	121207709	14327038	786	52373											
BCCIP	56647	broad.mit.edu	37	chr10	127512031	127512031	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgacgtgcactcagcgcCgagcttcttcgtagttcctc	11	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127512031	A	A	127512031	1	1	48	0	1	0	0	0	0	0	0	0	1361	667	23	1		1	BCCIP	10	127512031	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6304322	127512031	8022716	787	52374											
DHX32	55760	broad.mit.edu	37	chr10	127578731	127578731	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagaggtctggaagaaatAccataaaactgaaaaacatg	9	5	1	3	rs150291239		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127578731	G	G	127578731	1	3	48	0	1	0	0	0	0	0	0	0	4545	406	14	5		5	DHX32	10	127578731	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	66700	127578731	7956016	788	52375											
MKI67	4288	broad.mit.edu	37	chr10	129903161	129903161	+	Missense_Mutation	SNP	C	A	A													ctctttgaagccagccaggtCttctagagcctgggcctttt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129903161	A	A	129903161	3	1	48	1	0	0	0	0	1	0	0	0	9691	913	32	3	2839	3	MKI67	10	129903161	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2324430	129903161	5631586	789	52376	251	2									
MKI67	4288	broad.mit.edu	37	chr10	129903163	129903163	+	Missense_Mutation	SNP	T	C	C													ctttgaagccagccaggtctTctagagcctgggccttttcc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129903163	C	C	129903163	3	2	48	1	0	0	0	0	1	0	0	0	9691	1783	62	5	2841	5	MKI67	10	129903163	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2	129903163	5631584	790	52377	251	2									
MUC5B	727897	broad.mit.edu	37	chr11	1213754	1213754	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccggctctaccctgcaggttCgtgagtgtttctggtgcaat	12	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1213754	G	G	1213754	1	3	48	0	1	0	0	0	0	0	0	0	10073	899	31	4		4	MUC5B	11	1213754	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08		1213754	133792762	791	52378											
OR56A3	390083	broad.mit.edu	37	chr11	5969312	5969312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggccctaagcacatgtGgctcccacttcatgctcatc	7	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5969312	T	T	5969312	3	4	48	1	0	0	0	0	1	0	0	0	11228	1348	47	2	738	2	OR56A3	11	5969312	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4755558	5969312	129037204	792	52379											
PPFIBP2	8495	broad.mit.edu	37	chr11	7561477	7561477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagtgtggaggatgaggGgtgtgggggggcggtgaggc	25	4	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7561477	T	T	7561477	1	4	48	0	1	0	0	0	0	0	0	0	12410	1247	43	2		2	PPFIBP2	11	7561477	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1592165	7561477	127445039	793	52380											
OR5P2	120065	broad.mit.edu	37	chr11	7817741	7817741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacataaatgaaggtaatgGtcccatagaacagggtaacc	9	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7817741	T	T	7817741	3	4	48	1	0	0	0	0	1	0	0	0	11272	1261	44	3	223	3	OR5P2	11	7817741	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	256264	7817741	127188775	794	52381											
GALNTL4	374378	broad.mit.edu	37	chr11	11643012	11643013	+	In_Frame_Ins	INS	-	GGG	GGG													tgtcgggcgccggctcctgcINSccccgcacatacacgctggc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGG	11643013	GGG	GGG	11643012	7	5	48	1	0	1	1	0	0	0	0	0	6285	726	26	0	1738	0	GALNTL4	11	11643012	In_Frame_Ins	INS	-	TCGA-17-Z015-01A-01W-0746-08	3825271	11643012	123363504	795	52382											
PIK3C2A	5286	broad.mit.edu	37	chr11	17115871	17115871	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagttcctgaaattcgtcaAatgttcggaagacaaatgat	9	6	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17115871	C	C	17115871	3	2	48	1	0	0	0	0	1	0	0	0	12004	14	1	5	696	5	PIK3C2A	11	17115871	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	5472859	17115871	117890645	796	52383											
TSG101	7251	broad.mit.edu	37	chr11	18505561	18505561	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctcagtttgtcactgacCgcagagatgagagaggctcg	12	10	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18505561	T	T	18505561	2	4	48	1	0	0	0	0	0	0	0	1	16741	639	23	4		4	TSG101	11	18505561	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1389690	18505561	116500955	797	52384											
TMEM86A	144110	broad.mit.edu	37	chr11	18723452	18723452	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtgccctactctcggGcgcttatcatgtccacctac	7	16	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18723452	C	C	18723452	3	2	48	1	0	0	0	0	1	0	0	0	16331	1203	42	4	629	4	TMEM86A	11	18723452	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	217891	18723452	116283064	798	52385											
SLC6A5	9152	broad.mit.edu	37	chr11	20652075	20652075	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgagccttttggtgcttTttaagtgagcccaagggagc	13	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20652075	C	C	20652075	1	2	48	0	1	0	0	0	0	0	0	0	14801	1856	64	5		5	SLC6A5	11	20652075	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1928623	20652075	114354441	799	52386											
NELL1	4745	broad.mit.edu	37	chr11	20958066	20958066	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaatgaaagccccatttctCacctggtcatcctctttgcc	7	14	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20958066	A	A	20958066	1	1	48	0	1	0	0	0	0	0	0	0	10428	841	29	3		3	NELL1	11	20958066	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	305991	20958066	114048450	800	52387											
CCDC73	493860	broad.mit.edu	37	chr11	32632877	32632877	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactcattttagtgactgaaCttgtttctgatcctatgctt	6	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32632877	G	G	32632877	1	3	48	0	1	0	0	0	0	0	0	0	2874	580	20	4		4	CCDC73	11	32632877	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	11674811	32632877	102373639	801	52388											
C11orf41	25758	broad.mit.edu	37	chr11	33628275	33628275	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgacacatcttctgggtcTgtgcagctcattgccataaa	8	10	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33628275	A	A	33628275	2	1	48	1	0	0	0	0	0	0	0	1	1652	1567	55	5		5	C11orf41	11	33628275	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	995398	33628275	101378241	802	52389											
FBXO3	26273	broad.mit.edu	37	chr11	33772068	33772068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattaactgaaaggtgaccCcatttaaaattctcacctga	5	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33772068	A	A	33772068	1	1	48	0	1	0	0	0	0	0	0	0	5796	638	22	2		2	FBXO3	11	33772068	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	143793	33772068	101234448	803	52390											
ABTB2	25841	broad.mit.edu	37	chr11	34182595	34182595	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgagaacgaggtcctcagaGactcgatccagatgtgcagc	13	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34182595	C	C	34182595	3	2	48	1	0	0	0	0	1	0	0	0	103	942	33	4	853	4	ABTB2	11	34182595	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	410527	34182595	100823921	804	52391											
PAMR1	25891	broad.mit.edu	37	chr11	35492293	35492293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgatgatctggccatcgcGgttgtctccatcacgaacct	9	13	3	2	rs144144764	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35492293	A	A	35492293	3	1	48	1	0	0	0	0	1	0	0	0	11507	1116	39	4	1677	4	PAMR1	11	35492293	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1309698	35492293	99514223	805	52392											
C11orf74	119710	broad.mit.edu	37	chr11	36680778	36680778	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgcttattttaattttGttcttattctagcaacatta	5	5	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36680778	T	T	36680778	1	4	48	0	1	0	0	0	0	0	0	0	1674	1392	48	3		3	C11orf74	11	36680778	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1188485	36680778	98325738	806	52393											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45926331	45926331	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagctgtgtcctggagatCagcgtgcggggtgtgaagat	16	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45926331	G	G	45926331	3	3	48	1	0	0	0	0	1	0	0	0	9376	816	29	4	1873	4	MAPK8IP1	11	45926331	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9245553	45926331	89080185	807	52394											
NUP160	23279	broad.mit.edu	37	chr11	47829998	47829998	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactcacttccccatttaatGaggtaataagataagagtag	7	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47829998	A	A	47829998	2	1	48	1	0	0	0	0	0	0	0	1	10852	1277	45	4		4	NUP160	11	47829998	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1903667	47829998	87176518	808	52395											
NUP160	23279	broad.mit.edu	37	chr11	47857177	47857177	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtacacacagaataactTggtatgtgtcttatttgttt	7	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47857177	A	A	47857177	1	1	48	0	1	0	0	0	0	0	0	0	10852	1827	63	5		5	NUP160	11	47857177	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	27179	47857177	87149339	809	52396											
OR4A16	81327	broad.mit.edu	37	chr11	55111427	55111427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggttgccctcgtttttgttCcctgtatttttatgtatgtt	8	7	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55111427	A	A	55111427	3	1	48	1	0	0	0	0	1	0	0	0	11135	855	30	3	753	3	OR4A16	11	55111427	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7254250	55111427	79895089	810	52397											
OR4A15	81328	broad.mit.edu	37	chr11	55135487	55135487	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgactgaatttatcctctTagggctcacacagaaccctg	8	11	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55135487	C	C	55135487	3	2	48	1	0	0	0	0	1	0	0	0	11134	1764	61	5	130	5	OR4A15	11	55135487	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	24060	55135487	79871029	811	52398											
OR4C11	219429	broad.mit.edu	37	chr11	55370991	55370991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcacttctgcattcctcaGtgtgtagatgagtggattga	10	7	3	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55370991	T	T	55370991	3	4	48	1	0	0	0	0	1	0	0	0	11139	1020	36	3	75	3	OR4C11	11	55370991	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	235504	55370991	79635525	812	52399											
OR4P4	81300	broad.mit.edu	37	chr11	55405768	55405768	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcattgtacttcttaaCaaagacttgtaagcttataa	5	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55405768	A	A	55405768	1	1	48	0	1	0	0	0	0	0	0	0	11174	493	17	3		3	OR4P4	11	55405768	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	34777	55405768	79600748	813	52400											
OR4S2	219431	broad.mit.edu	37	chr11	55419009	55419009	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgctctggggagttttgtTatcttgctaatctcctacag	9	8	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55419009	A	A	55419009	2	1	48	1	0	0	0	0	0	0	0	1	11177	1741	61	5		5	OR4S2	11	55419009	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	13241	55419009	79587507	814	52401											
SPRYD5	84767	broad.mit.edu	37	chr11	55648735	55648735	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctctgaccagagataaatCagaaatgtgttcatctgctg	8	9	4	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55648735	A	A	55648735	1	1	48	0	1	0	0	0	0	0	0	0	15229	841	29	3		3	SPRYD5	11	55648735	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	229726	55648735	79357781	815	52402											
OR8K5	219453	broad.mit.edu	37	chr11	55926935	55926935	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttaagctgtaaatcaaagGgttaagcatggggattacta	10	5	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55926935	C	C	55926935	3	2	48	1	0	0	0	0	1	0	0	0	11339	1232	43	4	67	4	OR8K5	11	55926935	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	278200	55926935	79079581	816	52403											
CTNND1	1500	broad.mit.edu	37	chr11	57571070	57571070	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgaatgctcaagagccAtctgatgaattgtctcttcc	8	10	4	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57571070	G	G	57571070	1	3	48	0	1	0	0	0	0	0	0	0	4053	232	8	5		5	CTNND1	11	57571070	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1644135	57571070	77435446	817	52404											
OR9Q1	219956	broad.mit.edu	37	chr11	57797249	57797249	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctactggcatttctgcaGttaaagtcaccatcactcca	5	14	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57797249	C	C	57797249	1	2	48	0	1	0	0	0	0	0	0	0	11349	1044	36	4		4	OR9Q1	11	57797249	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	226179	57797249	77209267	818	52405											
OR9Q1	219956	broad.mit.edu	37	chr11	57876617	57876617	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagaagaagaagttgatctGattgtcacaacagaaggaga	11	5	2	7			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57876617	C	C	57876617	1	2	48	0	1	0	0	0	0	0	0	0	11349	1305	45	4		4	OR9Q1	11	57876617	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	79368	57876617	77129899	819	52406											
OR10Q1	219960	broad.mit.edu	37	chr11	57995886	57995886	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggggaagagggccagGcccagggccccacccagcat	17	13	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995886	T	T	57995886	2	4	48	1	0	0	0	0	0	0	0	1	11010	1190	42	3		3	OR10Q1	11	57995886	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	119269	57995886	77010630	820	52407											
OR10W1	81341	broad.mit.edu	37	chr11	58034795	58034795	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtgactctgagcacaaAcaacatgcatgactggtggc	11	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58034795	C	C	58034795	3	2	48	1	0	0	0	0	1	0	0	0	11015	43	2	5	385	5	OR10W1	11	58034795	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	38909	58034795	76971721	821	52408											
CNTF	1270	broad.mit.edu	37	chr11	58391337	58391337	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtattgggtctttctaaaGtccagtcatagagcccaaat	8	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58391337	A	A	58391337	1	1	48	0	1	0	0	0	0	0	0	0	3669	1044	36	4		4	CNTF	11	58391337	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	356542	58391337	76615179	822	52409											
GLYATL2	219970	broad.mit.edu	37	chr11	58604808	58604808	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaggacttcctctaatttGtcaggagctttggtgaagat	11	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58604808	C	C	58604808	3	2	48	1	0	0	0	0	1	0	0	0	6545	1368	48	4	647	4	GLYATL2	11	58604808	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	213471	58604808	76401708	823	52410											
OR5AN1	390195	broad.mit.edu	37	chr11	59132851	59132851	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccttaaagaggttgcaaaAgagaaagtgctgctgagttt	12	5	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59132851	G	G	59132851	3	3	48	1	0	0	0	0	1	0	0	0	11237	72	3	5	922	5	OR5AN1	11	59132851	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	528043	59132851	75873665	824	52411											
GIF	2694	broad.mit.edu	37	chr11	59609961	59609961	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcagggtcttggcaaagcGgacggctatcggcaaggtcg	16	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59609961	C	C	59609961	3	2	48	1	0	0	0	0	1	0	0	0	6440	1116	39	4	811	4	GIF	11	59609961	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	477110	59609961	75396555	825	52412											
MS4A6A	64231	broad.mit.edu	37	chr11	59940732	59940732	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaggacaccatcaggaaGataaaactgctcctcccaca	7	12	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59940732	A	A	59940732	1	1	48	0	1	0	0	0	0	0	0	0	9958	957	33	4		4	MS4A6A	11	59940732	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	330771	59940732	75065784	826	52413											
VWCE	220001	broad.mit.edu	37	chr11	61048167	61048167	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcagcttcacacctcaccTtttcacaggtcaccttcccg	5	17	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61048167	A	A	61048167	3	1	48	1	0	0	0	0	1	0	0	0	17372	1609	56	5	1662	5	VWCE	11	61048167	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1107435	61048167	73958349	827	52414											
DDB1	1642	broad.mit.edu	37	chr11	61077628	61077628	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctccaaactcactgccatCtcacagaattcccacccctc	2	21	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61077628	T	T	61077628	1	4	48	0	1	0	0	0	0	0	0	0	4356	928	32	4		4	DDB1	11	61077628	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	29461	61077628	73928888	828	52415											
C11orf66	220004	broad.mit.edu	37	chr11	61253281	61253281	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttttgcagatttcttgcaGaagaaatcgatcggcgcaaa	9	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61253281	T	T	61253281	3	4	48	1	0	0	0	0	1	0	0	0	1668	933	33	3	607	3	C11orf66	11	61253281	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	175653	61253281	73753235	829	52416											
AHNAK	79026	broad.mit.edu	37	chr11	62297923	62297923	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccacatcaggcatggagatCttgggggccttgaagtgcat	13	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62297923	G	G	62297923	3	3	48	1	0	0	0	0	1	0	0	0	414	912	32	4	13826	4	AHNAK	11	62297923	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1044642	62297923	72708593	830	52417											
ZBTB3	79842	broad.mit.edu	37	chr11	62519825	62519825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaccgtggcatgtcgccGtagtgtgtaagagcatgaga	15	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62519825	T	T	62519825	2	4	48	1	0	0	0	0	0	0	0	1	17660	1144	40	3		3	ZBTB3	11	62519825	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	221902	62519825	72486691	831	52418											
POLR2G	5436	broad.mit.edu	37	chr11	62529221	62529221	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactccccttgtcgtccaatAacctgccagcgcctggcctg	9	17	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62529221	G	G	62529221	1	3	48	0	1	0	0	0	0	0	0	0	12315	377	13	5		5	POLR2G	11	62529221	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	9396	62529221	72477295	832	52419											
FAM86C	55199	broad.mit.edu	37	chr11	71504425	71504425	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcactctgtctgcccccaGcacgaggctgtccacacaga	8	17	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71504425	T	T	71504425	5	4	48	1	0	0	0	0	0	0	1	0	5699	985	34	3	254	3	FAM86C	11	71504425	Splice_Site	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8975204	71504425	63502091	833	52420											
NUMA1	4926	broad.mit.edu	37	chr11	71715082	71715082	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctccccgccgcagaaGgctgttccctagcttcttgg	12	14	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71715082	C	C	71715082	3	2	48	1	0	0	0	0	1	0	0	0	10845	1000	35	4	168	4	NUMA1	11	71715082	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	210657	71715082	63291434	834	52421											
FCHSD2	9873	broad.mit.edu	37	chr11	72726866	72726866	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatttacctgtaatcattcCgatcatcagcttttactcca	3	11	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72726866	T	T	72726866	3	4	48	1	0	0	0	0	1	0	0	0	5847	652	23	4	2060	4	FCHSD2	11	72726866	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1011784	72726866	62279650	835	52422											
P2RY2	5029	broad.mit.edu	37	chr11	72945675	72945675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggtggccggggccgtGtgggtgttggtgctggcctg	22	10	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72945675	T	T	72945675	2	4	48	1	0	0	0	0	0	0	0	1	11446	1364	48	3		3	P2RY2	11	72945675	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	218809	72945675	62060841	836	52423											
RAB6A	5870	broad.mit.edu	37	chr11	73429723	73429723	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctaggaatcaagctcctgAaccgctcttgacctgctgtg	10	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73429723	G	G	73429723	1	3	48	0	1	0	0	0	0	0	0	0	13059	246	9	5		5	RAB6A	11	73429723	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	484048	73429723	61576793	837	52424											
C11orf82	220042	broad.mit.edu	37	chr11	82644076	82644076	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagaatctcaccacacaggGagagtgaccattctagtcta	8	11	4	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82644076	T	T	82644076	4	4	48	1	0	0	0	0	0	1	0	0	1677	1175	41	3	1710	3	C11orf82	11	82644076	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	9214353	82644076	52362440	838	52425											
DLG2	1740	broad.mit.edu	37	chr11	83445398	83445398	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcccttccttccttccttCcttccttccttccttccttc	0	20	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83445398	T	T	83445398	1	4	48	0	1	0	0	0	0	0	0	0	4595	870	30	4		4	DLG2	11	83445398	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	801322	83445398	51561118	839	52426											
DLG2	1740	broad.mit.edu	37	chr11	83497874	83497874	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaatcttggtatttcataAggcatattatcctgatagaa	8	5	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83497874	G	G	83497874	1	3	48	0	1	0	0	0	0	0	0	0	4595	87	3	5		5	DLG2	11	83497874	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	52476	83497874	51508642	840	52427											
FZD4	8322	broad.mit.edu	37	chr11	86662549	86662549	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atccttttgaagatttgaccGaattttgaacaaggccacca	7	9	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86662549	A	A	86662549	3	1	48	1	0	0	0	0	1	0	0	0	6192	1057	37	4	368	4	FZD4	11	86662549	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3164675	86662549	48343967	841	52428											
GRM5	2915	broad.mit.edu	37	chr11	88386591	88386591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtggggaaataaaaaaaCcctcagcttagaacagatat	8	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88386591	A	A	88386591	1	1	48	0	1	0	0	0	0	0	0	0	6866	522	18	3		3	GRM5	11	88386591	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1724042	88386591	46619925	842	52429											
NOX4	50507	broad.mit.edu	37	chr11	89068997	89068997	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagccacatatcaaatttttGaggtatagtacttaccctct	5	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89068997	T	T	89068997	1	4	48	0	1	0	0	0	0	0	0	0	10653	1305	45	3		3	NOX4	11	89068997	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	682406	89068997	45937519	843	52430											
NOX4	50507	broad.mit.edu	37	chr11	89177467	89177467	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctatgtcaaggactcagttCttcctctccctaagtaaata	5	11	5	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177467	A	A	89177467	1	1	48	0	1	0	0	0	0	0	0	0	10653	928	32	3		3	NOX4	11	89177467	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	108470	89177467	45829049	844	52431											
TRIM49	57093	broad.mit.edu	37	chr11	89531802	89531802	+	Intron	DEL	A	-	-													tgcagagtaatatgcactgcAaaaaaaaaaaaaaagaaaac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89531802	-	-	89531802	6	5	48	0	1	1	0	1	0	0	0	0	16649	145	5	0		0	TRIM49	11	89531802	Intron	DEL	A	TCGA-17-Z015-01A-01W-0746-08	354335	89531802	45474714	845	52432											
MTNR1B	4544	broad.mit.edu	37	chr11	92715526	92715526	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaactcatgaaatggtgGgagagagtctgctgcaaggg	15	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92715526	T	T	92715526	1	4	48	0	1	0	0	0	0	0	0	0	10046	1247	43	2		2	MTNR1B	11	92715526	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3183724	92715526	42290990	846	52433											
HEPHL1	341208	broad.mit.edu	37	chr11	93797496	93797496	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttttgaatgtgcctgacaGgtatcctgaatagatattca	8	7	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93797496	A	A	93797496	5	1	48	1	0	0	0	0	0	0	1	0	7122	1014	35	4	642	4	HEPHL1	11	93797496	Splice_Site	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1081970	93797496	41209020	847	52434											
ANKRD49	54851	broad.mit.edu	37	chr11	94229854	94229855	+	5'UTR	INS	-	A	A													tttttatttagaatagtagtINSaaaaaatggaaaaagaaaaa							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94229855	A	A	94229854	6	5	48	0	1	1	1	0	0	0	0	0	675	1653	57	0		0	ANKRD49	11	94229854	5'UTR	INS	-	TCGA-17-Z015-01A-01W-0746-08	432358	94229854	40776662	848	52435											
PIWIL4	143689	broad.mit.edu	37	chr11	94351135	94351135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggagcactcaacaaatGgtacaagtacaatcatgatt	8	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94351135	T	T	94351135	3	4	48	1	0	0	0	0	1	0	0	0	12055	1357	47	2	2096	2	PIWIL4	11	94351135	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	121281	94351135	40655381	849	52436											
PGR	5241	broad.mit.edu	37	chr11	100920868	100920868	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccagtttaggtaatttatcAgggaatatggttttggtaat	11	3	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100920868	T	T	100920868	1	4	48	0	1	0	0	0	0	0	0	0	11900	203	7	5		5	PGR	11	100920868	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	6569733	100920868	34085648	850	52437											
MMP7	4316	broad.mit.edu	37	chr11	102394103	102394103	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccaaagaatggccaagttCatgagttgcagcatacagga	10	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102394103	A	A	102394103	4	1	48	1	0	0	0	0	0	1	0	0	9761	835	29	3	168	3	MMP7	11	102394103	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1473235	102394103	32612413	851	52438											
MMP27	64066	broad.mit.edu	37	chr11	102563669	102563669	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgagacatccatgcttacCtttgtactggaaagcagcat	9	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102563669	T	T	102563669	3	4	48	1	0	0	0	0	1	0	0	0	9758	695	24	4	252	4	MMP27	11	102563669	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	169566	102563669	32442847	852	52439											
MMP12	4321	broad.mit.edu	37	chr11	102734850	102734850	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaatgttatttccagtAtcttcatggtttcctcatct	5	8	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102734850	G	G	102734850	1	3	48	0	1	0	0	0	0	0	0	0	9744	464	16	5		5	MMP12	11	102734850	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	171181	102734850	32271666	853	52440											
CASP5	838	broad.mit.edu	37	chr11	104871220	104871220	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctcagcactgactccatAtcctataaaagagcaatgtc	6	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104871220	G	G	104871220	2	3	48	1	0	0	0	0	0	0	0	1	2700	446	16	5		5	CASP5	11	104871220	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2136370	104871220	30135296	854	52441											
GUCY1A2	2977	broad.mit.edu	37	chr11	106697123	106697123	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagaaattccatttttagtCaaaataatcttctatatcaa	3	6	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106697123	A	A	106697123	1	1	48	0	1	0	0	0	0	0	0	0	6958	841	29	3		3	GUCY1A2	11	106697123	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1825903	106697123	28309393	855	52442											
ZW10	9183	broad.mit.edu	37	chr11	113619168	113619168	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaaaaaaagaagtttTaaacaagaaaccattcgcag	5	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113619168	G	G	113619168	1	3	48	0	1	0	0	0	0	0	0	0	18376	1769	61	5		5	ZW10	11	113619168	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	6922045	113619168	21387348	856	52443											
NNMT	4837	broad.mit.edu	37	chr11	114127526	114127526	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgtctcatctccctgTgtctgggccaagccctcttc	7	18	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114127526	C	C	114127526	1	2	48	0	1	0	0	0	0	0	0	0	10604	1711	59	5		5	NNMT	11	114127526	5'Flank	SNP	T	TCGA-17-Z015-01A-01W-0746-08	508358	114127526	20878990	857	52444											
DSCAML1	57453	broad.mit.edu	37	chr11	117428976	117428976	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatgaaatttcacgaaacGtgagcaagtgaggtggagcg	13	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117428976	A	A	117428976	1	1	48	0	1	0	0	0	0	0	0	0	4809	1160	40	4		4	DSCAML1	11	117428976	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3301450	117428976	17577540	858	52445											
DSCAML1	57453	broad.mit.edu	37	chr11	117553109	117553109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcattcccctctgcctgacCgtgcctctgtgcttcttccc	6	19	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117553109	A	A	117553109	1	1	48	0	1	0	0	0	0	0	0	0	4809	667	23	1		1	DSCAML1	11	117553109	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	124133	117553109	17453407	859	52446											
FOXR1	283150	broad.mit.edu	37	chr11	118849735	118849735	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtatccccctggaaagctgGaggtctcaggacgtaggaag	14	9	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118849735	T	T	118849735	4	4	48	1	0	0	0	0	0	1	0	0	6091	1175	41	3	215	3	FOXR1	11	118849735	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1296626	118849735	16156781	860	52447											
HYOU1	10525	broad.mit.edu	37	chr11	118921762	118921762	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccctgtctagactgagCacgccactctcatccaggtt	7	16	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118921762	A	A	118921762	2	1	48	1	0	0	0	0	0	0	0	1	7540	697	25	3		3	HYOU1	11	118921762	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	72027	118921762	16084754	861	52448											
ASAM	79827	broad.mit.edu	37	chr11	122944291	122944291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagaacctctcacctctGgccccactaggctgtatgcc	8	16	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122944291	T	T	122944291	3	4	48	1	0	0	0	0	1	0	0	0	1013	1348	47	2	112	2	ASAM	11	122944291	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4022529	122944291	12062225	862	52449											
GRAMD1B	57476	broad.mit.edu	37	chr11	123489532	123489532	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctggcctcgtcccctcaCctccaccttcatcccaccca	3	23	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123489532	T	T	123489532	1	4	48	0	1	0	0	0	0	0	0	0	6814	522	18	4		4	GRAMD1B	11	123489532	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	545241	123489532	11516984	863	52450											
TMEM225	338661	broad.mit.edu	37	chr11	123756149	123756149	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattgtgagtgaaaatttcTagctggaaccaccaccacta	7	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123756149	C	C	123756149	1	2	48	0	1	0	0	0	0	0	0	0	16270	1537	53	5		5	TMEM225	11	123756149	5'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	266617	123756149	11250367	864	52451											
OR8B2	26595	broad.mit.edu	37	chr11	124253105	124253105	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagaccgaaaagagtgatCaagccaaggttgcctaccat	9	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124253105	A	A	124253105	3	1	48	1	0	0	0	0	1	0	0	0	11321	825	29	3	809	3	OR8B2	11	124253105	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	496956	124253105	10753411	865	52452											
OR8B3	390271	broad.mit.edu	37	chr11	124267113	124267113	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagaccgaaaagaatgatCaagccaaggttgcctaccat	8	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124267113	A	A	124267113	3	1	48	1	0	0	0	0	1	0	0	0	11322	825	29	3	808	3	OR8B3	11	124267113	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	14008	124267113	10739403	866	52453											
PKNOX2	63876	broad.mit.edu	37	chr11	125079258	125079258	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgttgtagatcaaggctgGtagcccaagtaggaggttga	14	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125079258	A	A	125079258	1	1	48	0	1	0	0	0	0	0	0	0	12078	1276	44	4		4	PKNOX2	11	125079258	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	812145	125079258	9927258	867	52454											
PKNOX2	63876	broad.mit.edu	37	chr11	125281797	125281797	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggggtgtggagtcccggCatggggtatgaataacccac	16	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125281797	T	T	125281797	1	4	48	0	1	0	0	0	0	0	0	0	12078	725	25	4		4	PKNOX2	11	125281797	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	202539	125281797	9724719	868	52455											
FEZ1	9638	broad.mit.edu	37	chr11	125351303	125351303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcacccacctcggtctcCcaaagctgagattacaggca	7	15	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125351303	A	A	125351303	1	1	48	0	1	0	0	0	0	0	0	0	5880	638	22	2		2	FEZ1	11	125351303	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	69506	125351303	9655213	869	52456											
CHEK1	1111	broad.mit.edu	37	chr11	125505257	125505257	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttttcatggatttatatTattatttttccttgaaatct	3	5	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125505257	C	C	125505257	1	2	48	0	1	0	0	0	0	0	0	0	3365	1769	61	5		5	CHEK1	11	125505257	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	153954	125505257	9501259	870	52457											
DDX25	29118	broad.mit.edu	37	chr11	125780288	125780288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagctcctacttatgaattGgctctgcaaactggccgtgt	9	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125780288	T	T	125780288	3	4	48	1	0	0	0	0	1	0	0	0	4385	1339	47	2	563	2	DDX25	11	125780288	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	275031	125780288	9226228	871	52458											
FLI1	2313	broad.mit.edu	37	chr11	128564099	128564099	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggggctgcgaggtcaggCtgtaaccgggtcaatgtgtg	18	7	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128564099	A	A	128564099	1	1	48	1	0	0	0	0	0	0	0	0	5981	812	28	3		3	FLI1	11	128564099	Translation_Start_Site	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2783811	128564099	6442417	872	52459											
ARHGAP32	9743	broad.mit.edu	37	chr11	128839073	128839073	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacactggggtccctcTccacgttctgggtatgatgg	12	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128839073	C	C	128839073	3	2	48	1	0	0	0	0	1	0	0	0	883	1551	54	5	274	5	ARHGAP32	11	128839073	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	274974	128839073	6167443	873	52460											
PRDM10	56980	broad.mit.edu	37	chr11	129801063	129801063	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcagctgagggattgGgatagtggtctgttctggtt	17	5	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129801063	A	A	129801063	3	1	48	1	0	0	0	0	1	0	0	0	12557	1232	43	4	2152	4	PRDM10	11	129801063	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	961990	129801063	5205453	874	52461											
NTM	50863	broad.mit.edu	37	chr11	131717428	131717428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgtggctcatttcaggCagagcaaatgtgtaggaatc	12	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131717428	A	A	131717428	1	1	48	0	1	0	0	0	0	0	0	0	10794	725	25	3		3	NTM	11	131717428	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1916365	131717428	3289088	875	52462											
NTM	50863	broad.mit.edu	37	chr11	131836904	131836904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtcaagagcaattccaGggcttctggccaagttgcca	12	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131836904	T	T	131836904	1	4	48	0	1	0	0	0	0	0	0	0	10794	1015	35	2		2	NTM	11	131836904	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	119476	131836904	3169612	876	52463											
NTM	50863	broad.mit.edu	37	chr11	131865402	131865402	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggctgaggcatcaagaAtgaggagtcagccaggcaaa	14	8	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131865402	T	T	131865402	1	4	48	0	1	0	0	0	0	0	0	0	10794	116	4	5		5	NTM	11	131865402	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	28498	131865402	3141114	877	52464											
NTM	50863	broad.mit.edu	37	chr11	132204935	132204935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggcgagtgtgttctctcCacaggtccaggcgccgtcag	13	14	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132204935	A	A	132204935	1	1	48	0	1	0	0	0	0	0	0	0	10794	609	21	2		2	NTM	11	132204935	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	339533	132204935	2801581	878	52465											
OPCML	4978	broad.mit.edu	37	chr11	132304819	132304819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaggttcttgttttggggGcaaaaaccccttcccctgaa	9	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132304819	T	T	132304819	1	4	48	0	1	0	0	0	0	0	0	0	10968	1218	42	3		3	OPCML	11	132304819	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	99884	132304819	2701697	879	52466											
OPCML	4978	broad.mit.edu	37	chr11	132305912	132305912	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaagcagattgcaacttcCtccctcctgagtccctcaag	7	16	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132305912	G	G	132305912	1	3	48	0	1	0	0	0	0	0	0	0	10968	696	24	4		4	OPCML	11	132305912	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1093	132305912	2700604	880	52467											
OPCML	4978	broad.mit.edu	37	chr11	132693027	132693027	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggacttcagagggcacctGagtctacctggccatcctgc	11	13	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132693027	C	C	132693027	1	2	48	0	1	0	0	0	0	0	0	0	10968	1305	45	4		4	OPCML	11	132693027	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	387115	132693027	2313489	881	52468											
OPCML	4978	broad.mit.edu	37	chr11	133010616	133010616	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagacggaagacgaagacGgaagacgacgacgacgacga	15	8	0	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133010616	A	A	133010616	1	1	48	0	1	0	0	0	0	0	0	0	10968	1131	39	4		4	OPCML	11	133010616	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	317589	133010616	1995900	882	52469											
CACNA1C	775	broad.mit.edu	37	chr12	2764299	2764299	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatcactgaacacctcttcCttctctctcctaggtgtttg	5	13	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2764299	T	T	2764299	1	4	48	0	1	0	0	0	0	0	0	0	2566	696	24	4		4	CACNA1C	12	2764299	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08		2764299	131087596	883	52470											
CACNA1C	775	broad.mit.edu	37	chr12	2794920	2794920	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctctcctaccaggatgaCgaaaatcggcaactgacgct	10	12	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2794920	T	T	2794920	2	4	48	1	0	0	0	0	0	0	0	1	2566	535	19	4		4	CACNA1C	12	2794920	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	30621	2794920	131056975	884	52471											
TEAD4	7004	broad.mit.edu	37	chr12	3119872	3119872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcgctgggtgaggaacGgtaccgggggtcaagggagg	21	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3119872	T	T	3119872	1	4	48	0	1	0	0	0	0	0	0	0	15863	1131	39	1		1	TEAD4	12	3119872	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	324952	3119872	130732023	885	52472											
EFCAB4B	84766	broad.mit.edu	37	chr12	3775891	3775891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacataggccaaggccttccTgctgtggaatactgcttggt	11	11	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3775891	A	A	3775891	1	1	48	0	1	0	0	0	0	0	0	0	4977	1595	55	5		5	EFCAB4B	12	3775891	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	656019	3775891	130076004	886	52473											
GALNT8	26290	broad.mit.edu	37	chr12	4870418	4870418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgcagccctaaagaattaGggtaaggtcctgatggtgtg	13	7	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4870418	T	T	4870418	1	4	48	0	1	0	0	0	0	0	0	0	6281	1015	35	2		2	GALNT8	12	4870418	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1094527	4870418	128981477	887	52474											
NTF3	4908	broad.mit.edu	37	chr12	5588354	5588354	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatagagccaagatttgccGgagagaggagatagcggttg	15	5	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5588354	A	A	5588354	1	1	48	0	1	0	0	0	0	0	0	0	10791	1131	39	4		4	NTF3	12	5588354	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	717936	5588354	128263541	888	52475											
AICDA	57379	broad.mit.edu	37	chr12	8757303	8757303	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttttcatcagatgaaaacTgagagtgattgaacaataag	9	4	2	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8757303	C	C	8757303	1	2	48	0	1	0	0	0	0	0	0	0	422	1595	55	5		5	AICDA	12	8757303	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3168949	8757303	125094592	889	52476											
A2ML1	144568	broad.mit.edu	37	chr12	9013459	9013459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgccctgactcactgcCtccctgtttgcctctagggt	9	16	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9013459	A	A	9013459	1	1	48	0	1	0	0	0	0	0	0	0	5	696	24	2		2	A2ML1	12	9013459	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	256156	9013459	124838436	890	52477											
PZP	5858	broad.mit.edu	37	chr12	9313807	9313807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcttcagagccacactcCctggatatggtactggccct	10	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9313807	A	A	9313807	1	1	48	0	1	0	0	0	0	0	0	0	12977	638	22	2		2	PZP	12	9313807	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	300348	9313807	124538088	891	52478											
CLEC12B	387837	broad.mit.edu	37	chr12	10168176	10168176	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaactggaatgtggcgCtcacgtaaaactttttctct	8	10	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10168176	A	A	10168176	1	1	48	0	1	0	0	0	0	0	0	0	3530	812	28	3		3	CLEC12B	12	10168176	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	854369	10168176	123683719	892	52479											
CLEC7A	64581	broad.mit.edu	37	chr12	10280406	10280406	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcataggattcccaaaattaCagcaatgaggcgccaaggag	11	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10280406	G	G	10280406	3	3	48	1	0	0	0	0	1	0	0	0	3553	478	17	4	657	4	CLEC7A	12	10280406	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	112230	10280406	123571489	893	52480											
GUCY2C	2984	broad.mit.edu	37	chr12	14827455	14827455	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgagttcaaagggatttAgctgtggaatcatctattgc	11	5	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14827455	G	G	14827455	1	3	48	0	1	0	0	0	0	0	0	0	6961	435	15	5		5	GUCY2C	12	14827455	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4547049	14827455	119024440	894	52481											
RERG	85004	broad.mit.edu	37	chr12	15262427	15262428	+	Frame_Shift_Ins	INS	-	C	C													ccttccccccatcgcatgtgINScccctccctctgaatggtat							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15262428	C	C	15262427	7	5	48	1	0	1	1	0	0	0	0	0	13340	1319	46	0	386	0	RERG	12	15262427	Frame_Shift_Ins	INS	-	TCGA-17-Z015-01A-01W-0746-08	434972	15262427	118589468	895	52482											
PLCZ1	89869	broad.mit.edu	37	chr12	18854510	18854510	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgattgtctcctaaaacAgattccaatacttctgattc	4	10	3	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18854510	G	G	18854510	1	3	48	0	1	0	0	0	0	0	0	0	12139	203	7	5		5	PLCZ1	12	18854510	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3592083	18854510	114997385	896	52483											
PLCZ1	89869	broad.mit.edu	37	chr12	18892442	18892442	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgtgtgTgtgtgagagagagagagaga	20	0	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18892442	A	A	18892442	1	1	48	0	1	0	0	0	0	0	0	0	12139	1711	59	5		5	PLCZ1	12	18892442	5'Flank	SNP	T	TCGA-17-Z015-01A-01W-0746-08	37932	18892442	114959453	897	52484											
PLEKHA5	54477	broad.mit.edu	37	chr12	19460891	19460891	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagataaagagagaaataGgtatgaaagagaacgatcaa	11	2	1	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19460891	A	A	19460891	1	1	48	0	1	0	0	0	0	0	0	0	12154	1015	35	4		4	PLEKHA5	12	19460891	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	568449	19460891	114391004	898	52485											
SLCO1A2	6579	broad.mit.edu	37	chr12	21551342	21551342	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccaacaaaaaaagagtccAggaccagatggattcacagc	8	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21551342	G	G	21551342	1	3	48	0	1	0	0	0	0	0	0	0	14836	203	7	5		5	SLCO1A2	12	21551342	5'Flank	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2090451	21551342	112300553	899	52486											
ABCC9	10060	broad.mit.edu	37	chr12	22015839	22015839	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcattcccaaacacacgagtCagaaagagttgccattttgg	8	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22015839	A	A	22015839	1	1	48	0	1	0	0	0	0	0	0	0	59	841	29	3		3	ABCC9	12	22015839	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	464497	22015839	111836056	900	52487											
IFLTD1	160492	broad.mit.edu	37	chr12	25672901	25672901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgctgtccactgaaacaCacgctttcggaatgttggag	11	9	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25672901	A	A	25672901	3	1	48	1	0	0	0	0	1	0	0	0	7600	478	17	3	334	3	IFLTD1	12	25672901	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3657062	25672901	108178994	901	52488											
OVCH1	341350	broad.mit.edu	37	chr12	29617494	29617494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctccgaggaaaatagagGctctgcgctgtgtgggagac	15	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29617494	T	T	29617494	3	4	48	1	0	0	0	0	1	0	0	0	11417	1203	42	3	1377	3	OVCH1	12	29617494	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3944593	29617494	104234401	902	52489											
IPO8	10526	broad.mit.edu	37	chr12	30827041	30827041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaaaatgtacaaataccGtgaattttacaaacagcatg	7	6	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30827041	A	A	30827041	1	1	48	0	1	0	0	0	0	0	0	0	7868	1160	40	4		4	IPO8	12	30827041	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1209547	30827041	103024854	903	52490											
ADAMTS20	80070	broad.mit.edu	37	chr12	43944677	43944677	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgtagcccttgcctggatCccaagaaaatgccaagggac	10	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43944677	A	A	43944677	1	1	48	0	1	0	0	0	0	0	0	0	266	870	30	3		3	ADAMTS20	12	43944677	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	13117636	43944677	89907218	904	52491											
MCRS1	10445	broad.mit.edu	37	chr12	49959503	49959503	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accccaccctggtacccattCacacacccccagcccccaaa	3	23	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49959503	T	T	49959503	1	4	48	0	1	0	0	0	0	0	0	0	9492	841	29	4		4	MCRS1	12	49959503	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6014826	49959503	83892392	905	52492											
FAIM2	23017	broad.mit.edu	37	chr12	50288199	50288199	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagtgggcacaatcagaCaataaggtgagaaccaatgg	12	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50288199	A	A	50288199	1	1	48	0	1	0	0	0	0	0	0	0	5422	493	17	3		3	FAIM2	12	50288199	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	328696	50288199	83563696	906	52493											
CELA1	1990	broad.mit.edu	37	chr12	51733776	51733776	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgctgcagggtctgggcCagctgcccattggctgaaca	14	13	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51733776	G	G	51733776	2	3	48	1	0	0	0	0	0	0	0	1	3240	581	21	4		4	CELA1	12	51733776	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1445577	51733776	82118119	907	52494											
KRT72	140807	broad.mit.edu	37	chr12	52992582	52992582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggatgttcctccctccccCggtatcagcaaggatctcag	9	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52992582	T	T	52992582	1	4	48	0	1	0	0	0	0	0	0	0	8556	667	23	4		4	KRT72	12	52992582	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1258806	52992582	80859313	908	52495											
AMHR2	269	broad.mit.edu	37	chr12	53824052	53824052	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctacatcccatccacctggCgctgctttgccacagtaaga	7	16	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53824052	T	T	53824052	3	4	48	1	0	0	0	0	1	0	0	0	573	768	27	4	1449	4	AMHR2	12	53824052	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	831470	53824052	80027843	909	52496											
KIAA0748	9840	broad.mit.edu	37	chr12	55344741	55344742	+	Intron	DEL	TC	-	-													aatttttttccattttttttTccctttaatctcagagaaat					rs74928482		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55344742	-	-	55344741	6	5	48	0	1	1	0	1	0	0	0	0	8260	1798	62	0		0	KIAA0748	12	55344741	Intron	DEL	TC	TCGA-17-Z015-01A-01W-0746-08	1520689	55344741	78507154	910	52497											
OR6C2	341416	broad.mit.edu	37	chr12	55846562	55846562	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctaaagatctcatgctcaGatacatgggtaatagaacag	8	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55846562	T	T	55846562	3	4	48	1	0	0	0	0	1	0	0	0	11285	942	33	3	567	3	OR6C2	12	55846562	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	501821	55846562	78005333	911	52498											
MYO1A	4640	broad.mit.edu	37	chr12	57422451	57422451	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcgccacgatcagagggGttagagatcctcccacacag	11	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57422451	T	T	57422451	1	4	48	0	1	0	0	0	0	0	0	0	10162	1276	44	3		3	MYO1A	12	57422451	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1575889	57422451	76429444	912	52499											
MYO1A	4640	broad.mit.edu	37	chr12	57433111	57433111	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgtccaagacaagcctccaGagacctcaccagatctagcc	7	16	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57433111	A	A	57433111	1	1	48	0	1	0	0	0	0	0	0	0	10162	957	33	4		4	MYO1A	12	57433111	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	10660	57433111	76418784	913	52500											
MYO1A	4640	broad.mit.edu	37	chr12	57440853	57440853	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttactcacaaatcgggAggaattgttgttgcgaatgg	11	6	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57440853	T	T	57440853	3	4	48	1	0	0	0	0	1	0	0	0	10162	304	11	5	2754	5	MYO1A	12	57440853	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	7742	57440853	76411042	914	52501											
TMEM194A	23306	broad.mit.edu	37	chr12	57457954	57457954	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctcccaccaggatgacGtaaatgggacttttctaaga	9	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57457954	A	A	57457954	2	1	48	1	0	0	0	0	0	0	0	1	16239	1140	40	4		4	TMEM194A	12	57457954	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	17101	57457954	76393941	915	52502											
LRP1	4035	broad.mit.edu	37	chr12	57535139	57535139	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagcttgttcatgcccacCcttctgtctgccctcaggtc	8	17	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57535139	T	T	57535139	1	4	48	0	1	0	0	0	0	0	0	0	9038	638	22	4		4	LRP1	12	57535139	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	77185	57535139	76316756	916	52503											
FAM19A2	338811	broad.mit.edu	37	chr12	62415840	62415840	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagctctacactgccctctgGaaaaccaaacctcttctcaa	4	15	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62415840	A	A	62415840	1	1	48	0	1	0	0	0	0	0	0	0	5579	1189	41	4		4	FAM19A2	12	62415840	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4880701	62415840	71436055	917	52504											
DPY19L2	283417	broad.mit.edu	37	chr12	64061933	64061933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacggacgaactggaaggGgccgagaagaaaggtcttgg	16	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64061933	T	T	64061933	3	4	48	1	0	0	0	0	1	0	0	0	4781	1232	43	2	2123	2	DPY19L2	12	64061933	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1646093	64061933	69789962	918	52505											
IL26	55801	broad.mit.edu	37	chr12	68595782	68595782	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaagttttttaatataagGatttagaattcttaccctat	4	5	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68595782	A	A	68595782	1	1	48	0	1	0	0	0	0	0	0	0	7749	1189	41	4		4	IL26	12	68595782	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4533849	68595782	65256113	919	52506											
BEST3	144453	broad.mit.edu	37	chr12	70070771	70070771	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatccaagtcatgccctgcGtagcctttggtgggatccaa	11	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70070771	A	A	70070771	2	1	48	1	0	0	0	0	0	0	0	1	1411	1140	40	4		4	BEST3	12	70070771	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1474989	70070771	63781124	920	52507											
RAB3IP	117177	broad.mit.edu	37	chr12	70150087	70150087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttatttaaatatagaagcTaccaaattgggtagtacagt	7	4	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70150087	C	C	70150087	1	2	48	0	1	0	0	0	0	0	0	0	13046	1537	53	5		5	RAB3IP	12	70150087	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	79316	70150087	63701808	921	52508											
PTPRB	5787	broad.mit.edu	37	chr12	70966027	70966027	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaatttctggaggggaaaGattgttacactatgtggagt	12	4	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70966027	T	T	70966027	1	4	48	0	1	0	0	0	0	0	0	0	12904	957	33	3		3	PTPRB	12	70966027	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	815940	70966027	62885868	922	52509											
PTPRB	5787	broad.mit.edu	37	chr12	71029451	71029451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaaaggaatagctcacCtttttgtaaacagaggcttt	8	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71029451	A	A	71029451	3	1	48	1	0	0	0	0	1	0	0	0	12904	695	24	2	6386	2	PTPRB	12	71029451	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	63424	71029451	62822444	923	52510											
TRHDE	29953	broad.mit.edu	37	chr12	72704091	72704091	+	Intron	DEL	G	-	-													agcttgtattattataagtcGgtaaacctgaattcaagtct					rs7970630	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72704091	-	-	72704091	6	5	48	0	1	1	0	1	0	0	0	0	16603	1131	39	0		0	TRHDE	12	72704091	Intron	DEL	G	TCGA-17-Z015-01A-01W-0746-08	1674640	72704091	61147804	924	52511											
TRHDE	29953	broad.mit.edu	37	chr12	72774538	72774538	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttccttccttccttccttCcttccttgcttccttccttc	1	20	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72774538	G	G	72774538	1	3	48	0	1	0	0	0	0	0	0	0	16603	870	30	4		4	TRHDE	12	72774538	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	70447	72774538	61077357	925	52512											
GLIPR1	11010	broad.mit.edu	37	chr12	75884364	75884365	+	Intron	DEL	AA	-	-													ccgcaaaaaaaaacaacaacAaaaaaaaacattttagcagt					rs146756328		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75884365	-	-	75884364	6	5	48	0	1	1	0	1	0	0	0	0	6505	145	5	0		0	GLIPR1	12	75884364	Intron	DEL	AA	TCGA-17-Z015-01A-01W-0746-08	3109826	75884364	57967531	926	52513											
NAV3	89795	broad.mit.edu	37	chr12	78540113	78540113	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaattaattgaaaatagttTttatagttaaagtctttctt	6	2	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78540113	G	G	78540113	1	3	48	0	1	0	0	0	0	0	0	0	10279	1856	64	5		5	NAV3	12	78540113	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2655749	78540113	55311782	927	52514											
POC1B	282809	broad.mit.edu	37	chr12	89865359	89865359	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaaaggagtccattcgGtaactgaattttttgttagg	9	6	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89865359	A	A	89865359	1	1	48	0	1	0	0	0	0	0	0	0	12271	1276	44	4		4	POC1B	12	89865359	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	11325246	89865359	43986536	928	52515											
PLEKHG7	440107	broad.mit.edu	37	chr12	93147902	93147902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaatgcagacggctccacGtgccagagctgctagtggcc	12	13	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93147902	A	A	93147902	3	1	48	1	0	0	0	0	1	0	0	0	12170	1145	40	4	370	4	PLEKHG7	12	93147902	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3282543	93147902	40703993	929	52516											
PLXNC1	10154	broad.mit.edu	37	chr12	94634548	94634548	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtggtcattccaaattcCtctcaccgagttctccttag	6	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94634548	T	T	94634548	1	4	48	0	1	0	0	0	0	0	0	0	12221	696	24	4		4	PLXNC1	12	94634548	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1486646	94634548	39217347	930	52517											
CCDC38	120935	broad.mit.edu	37	chr12	96292327	96292327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggtgggaaggatttggCcagagtgatgaaacaaacat	14	4	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96292327	A	A	96292327	1	1	48	0	1	0	0	0	0	0	0	0	2837	754	26	3		3	CCDC38	12	96292327	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1657779	96292327	37559568	931	52518											
ANKS1B	56899	broad.mit.edu	37	chr12	99541606	99541606	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaggggagtatactgtcaTggaacacaaacggggagtaa	13	6	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99541606	C	C	99541606	1	2	48	0	1	0	0	0	0	0	0	0	689	1479	51	5		5	ANKS1B	12	99541606	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3249279	99541606	34310289	932	52519											
ANO4	121601	broad.mit.edu	37	chr12	101316171	101316171	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattataatacttgggaggGgtaataaactagaaacctta	8	5	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101316171	T	T	101316171	1	4	48	0	1	0	0	0	0	0	0	0	699	1247	43	2		2	ANO4	12	101316171	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1774565	101316171	32535724	933	52520											
MYBPC1	4604	broad.mit.edu	37	chr12	102025749	102025749	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttaagccaatgctgagaAatttggaaaataaactgaaa	8	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102025749	C	C	102025749	1	2	48	0	1	0	0	0	0	0	0	0	10105	29	1	5		5	MYBPC1	12	102025749	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	709578	102025749	31826146	934	52521											
STAB2	55576	broad.mit.edu	37	chr12	104046429	104046429	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcgaatatatgaataacacAgacatgttctacaccttgac	5	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104046429	T	T	104046429	2	4	48	1	0	0	0	0	0	0	0	1	15356	175	7	5		5	STAB2	12	104046429	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2020680	104046429	29805466	935	52522											
STAB2	55576	broad.mit.edu	37	chr12	104079016	104079016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgacatacatgctctgtGggtcacgttttctacaggct	10	9	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104079016	T	T	104079016	1	4	48	0	1	0	0	0	0	0	0	0	15356	1363	47	2		2	STAB2	12	104079016	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	32587	104079016	29772879	936	52523											
STAB2	55576	broad.mit.edu	37	chr12	104121076	104121076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagatctggtcggcccagGccccttcactgtttttgcac	10	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104121076	T	T	104121076	3	4	48	1	0	0	0	0	1	0	0	0	15356	1203	42	3	5069	3	STAB2	12	104121076	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	42060	104121076	29730819	937	52524											
STAB2	55576	broad.mit.edu	37	chr12	104126559	104126559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctactgcactccagccggGgcaacagagtgagaccctgt	12	13	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104126559	T	T	104126559	1	4	48	0	1	0	0	0	0	0	0	0	15356	1247	43	2		2	STAB2	12	104126559	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5483	104126559	29725336	938	52525											
CMKLR1	1240	broad.mit.edu	37	chr12	108686630	108686630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaagatcctggtcaccCtggcttccaagggggataag	13	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108686630	A	A	108686630	3	1	48	1	0	0	0	0	1	0	0	0	3611	681	24	2	1015	2	CMKLR1	12	108686630	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4560071	108686630	25165265	939	52526											
SSH1	54434	broad.mit.edu	37	chr12	109198892	109198892	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtcccaagataagtagcatCtcattgtctataaattcctt	5	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109198892	A	A	109198892	3	1	48	1	0	0	0	0	1	0	0	0	15302	912	32	3	2465	3	SSH1	12	109198892	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	512262	109198892	24653003	940	52527											
GIT2	9815	broad.mit.edu	37	chr12	110429410	110429410	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatgtaaattaccaactgtCaggagaattcttatccttta	5	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110429410	A	A	110429410	1	1	48	0	1	0	0	0	0	0	0	0	6461	841	29	3		3	GIT2	12	110429410	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1230518	110429410	23422485	941	52528											
SFRS9	8683	broad.mit.edu	37	chr12	120901792	120901792	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcatccagtttacgcagGgcatattccatgtcttcttt	8	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120901792	A	A	120901792	2	1	48	1	0	0	0	0	0	0	0	1	14297	1219	43	4		4	SFRS9	12	120901792	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	10472382	120901792	12950103	942	52529											
TMEM132B	114795	broad.mit.edu	37	chr12	125955814	125955814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgggctgctgtggtccGggggtgtggtcatatgtatg	18	7	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125955814	T	T	125955814	1	4	48	0	1	0	0	0	0	0	0	0	16169	1131	39	1		1	TMEM132B	12	125955814	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5054022	125955814	7896081	943	52530											
TMEM132D	121256	broad.mit.edu	37	chr12	129617823	129617823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtagcaaatgtctaggaCttgttcatgttgcataacaa	9	7	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129617823	A	A	129617823	1	1	48	0	1	0	0	0	0	0	0	0	16170	580	20	3		3	TMEM132D	12	129617823	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3662009	129617823	4234072	944	52531											
RIMBP2	23504	broad.mit.edu	37	chr12	130941233	130941233	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccggcatttctcttccagctCtcgaaccttggactgcacgg	9	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130941233	A	A	130941233	4	1	48	1	0	0	0	0	0	1	0	0	13472	922	32	3	3107	3	RIMBP2	12	130941233	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1323410	130941233	2910662	945	52532											
STX2	2054	broad.mit.edu	37	chr12	131293210	131293210	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccgaagatccactgaagtcCggttcccactctcatcctga	7	15	1	3	rs149127129	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131293210	G	G	131293210	3	3	48	1	0	0	0	0	1	0	0	0	15463	652	23	4	652	4	STX2	12	131293210	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	351977	131293210	2558685	946	52533											
STX2	2054	broad.mit.edu	37	chr12	131293229	131293229	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccggttcccactctcatcctGatcaaaactttgttcaatag	5	13	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131293229	C	C	131293229	3	2	48	1	0	0	0	0	1	0	0	0	15463	1299	45	4	671	4	STX2	12	131293229	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	19	131293229	2558666	947	52534											
TUBA3C	7278	broad.mit.edu	37	chr13	19753625	19753625	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accatcgggctgaattccatGttccaggcagtacagttccc	9	13	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19753625	A	A	19753625	3	1	48	1	0	0	0	0	1	0	0	0	16872	1377	48	4	1286	4	TUBA3C	13	19753625	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08		19753625	95416253	948	52535											
SACS	26278	broad.mit.edu	37	chr13	23915047	23915047	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaacaagctttaagcagcTagtggtctttaactgttcta	7	7	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23915047	A	A	23915047	3	1	48	1	0	0	0	0	1	0	0	0	13915	1522	53	5	10775	5	SACS	13	23915047	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	4161422	23915047	91254831	949	52536											
NBEA	26960	broad.mit.edu	37	chr13	36046595	36046595	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgtggtggtggccaagggGactctctccatcaccacgac	12	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36046595	T	T	36046595	2	4	48	1	0	0	0	0	0	0	0	1	10281	1161	41	3		3	NBEA	13	36046595	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	12131548	36046595	79123283	950	52537											
DCLK1	9201	broad.mit.edu	37	chr13	36383060	36383060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttcttgtgctcttttcCtgctgcaggctcctttgtgc	9	11	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36383060	A	A	36383060	1	1	48	0	1	0	0	0	0	0	0	0	4324	696	24	2		2	DCLK1	13	36383060	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	336465	36383060	78786818	951	52538											
SPG20	23111	broad.mit.edu	37	chr13	36942350	36942350	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagcatgttaagcactatAtgagctgctgaggatacagg	11	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36942350	G	G	36942350	1	3	48	0	1	0	0	0	0	0	0	0	15160	464	16	5		5	SPG20	13	36942350	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	559290	36942350	78227528	952	52539											
TRPC4	7223	broad.mit.edu	37	chr13	38357119	38357119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccactaggttttttgtGgttcaataacagctcaacag	7	9	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38357119	T	T	38357119	3	4	48	1	0	0	0	0	1	0	0	0	16705	1348	47	2	2636	2	TRPC4	13	38357119	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1414769	38357119	76812759	953	52540											
FREM2	341640	broad.mit.edu	37	chr13	39454433	39454433	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctaggtcgctctaggcCgagaatggtatatacatacg	10	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39454433	A	A	39454433	2	1	48	1	0	0	0	0	0	0	0	1	6105	644	23	1		1	FREM2	13	39454433	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1097314	39454433	75715445	954	52541											
STOML3	161003	broad.mit.edu	37	chr13	39541077	39541077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctcggtggctaccgtgCtcaaggtctgcaggtagcgc	13	12	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39541077	A	A	39541077	3	1	48	1	0	0	0	0	1	0	0	0	15433	797	28	3	118	3	STOML3	13	39541077	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	86644	39541077	75628801	955	52542											
FOXO1	2308	broad.mit.edu	37	chr13	41070339	41070340	+	Intron	INS	-	A	A													tcctatctctcactgatcccINSagggagacttcagaatgctc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41070340	A	A	41070339	6	5	48	0	1	1	1	0	0	0	0	0	6083	609	21	0		0	FOXO1	13	41070339	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	1529262	41070339	74099539	956	52543											
KIAA0564	23078	broad.mit.edu	37	chr13	42501195	42501195	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgcttgtcatgaagaaaGagataagcgatgcctaaact	10	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42501195	C	C	42501195	1	2	48	0	1	0	0	0	0	0	0	0	8255	957	33	4		4	KIAA0564	13	42501195	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1430856	42501195	72668683	957	52544											
LCP1	3936	broad.mit.edu	37	chr13	46758669	46758669	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcatagtactagtaaacaGaagactgacttttggttttc	8	7	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46758669	A	A	46758669	1	1	48	0	1	0	0	0	0	0	0	0	8763	957	33	4		4	LCP1	13	46758669	5'Flank	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4257474	46758669	68411209	958	52545											
HTR2A	3356	broad.mit.edu	37	chr13	47469742	47469742	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcagctttttctctagGgacactgccatgatgacgag	10	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47469742	A	A	47469742	2	1	48	1	0	0	0	0	0	0	0	1	7511	1219	43	4		4	HTR2A	13	47469742	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	711073	47469742	67700136	959	52546											
OLFM4	10562	broad.mit.edu	37	chr13	53603065	53603065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacctccaattcccagcCccggcttcagctctttccca	7	18	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53603065	A	A	53603065	3	1	48	1	0	0	0	0	1	0	0	0	10950	623	22	2	96	2	OLFM4	13	53603065	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6133323	53603065	61566813	960	52547											
MYCBP2	23077	broad.mit.edu	37	chr13	77644747	77644747	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaaactaatgaagacaatGaaatagctgttaaccaacct	5	8	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77644747	A	A	77644747	1	1	48	0	1	0	0	0	0	0	0	0	10112	1305	45	4		4	MYCBP2	13	77644747	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	24041682	77644747	37525131	961	52548											
SCEL	8796	broad.mit.edu	37	chr13	78192077	78192077	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttataatgttgctttattgAcctagcacaaccccaaaatc	4	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78192077	T	T	78192077	1	4	48	0	1	0	0	0	0	0	0	0	14000	290	10	5		5	SCEL	13	78192077	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	547330	78192077	36977801	962	52549											
EDNRB	1910	broad.mit.edu	37	chr13	78477707	78477708	+	Frame_Shift_Ins	INS	-	A	A													tgaaaggcaccagcttacacINSatctcagctccaaatggcca							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78477708	A	A	78477707	7	5	48	1	0	1	1	0	0	0	0	0	4960	478	17	0	954	0	EDNRB	13	78477707	Frame_Shift_Ins	INS	-	TCGA-17-Z015-01A-01W-0746-08	285630	78477707	36692171	963	52550											
SLITRK1	114798	broad.mit.edu	37	chr13	84454262	84454262	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtgcccgggaggatgaGctggatagcgttgtactcca	15	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84454262	C	C	84454262	3	2	48	1	0	0	0	0	1	0	0	0	14856	971	34	4	713	4	SLITRK1	13	84454262	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5976555	84454262	30715616	964	52551											
ABCC4	10257	broad.mit.edu	37	chr13	95735306	95735306	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaattctggaagacagagTctgccgaatttcagggggtc	13	7	3	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95735306	A	A	95735306	1	1	48	0	1	0	0	0	0	0	0	0	55	1682	58	5		5	ABCC4	13	95735306	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	11281044	95735306	19434572	965	52552											
DZIP1	22873	broad.mit.edu	37	chr13	96239622	96239622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccaactccttcctctcCttcaactggaatgtgctaaa	4	14	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96239622	A	A	96239622	1	1	48	0	1	0	0	0	0	0	0	0	4903	696	24	2		2	DZIP1	13	96239622	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	504316	96239622	18930256	966	52553											
NALCN	259232	broad.mit.edu	37	chr13	102047643	102047643	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagtggaggatagtgctcgAaggtcattggcgtattcata	14	5	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102047643	T	T	102047643	3	4	48	1	0	0	0	0	1	0	0	0	10242	246	9	5	5202	5	NALCN	13	102047643	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	5808021	102047643	13122235	967	52554											
MYO16	23026	broad.mit.edu	37	chr13	109779932	109779932	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggacccagcctcgtgttcCgggctcgcgcatgctctgac	13	15	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109779932	T	T	109779932	1	4	48	0	1	0	0	0	0	0	0	0	10158	667	23	4		4	MYO16	13	109779932	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7732289	109779932	5389946	968	52555											
F10	2159	broad.mit.edu	37	chr13	113798342	113798342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccagacgcagcctgagaGgggcgacaacaacctcacca	10	15	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113798342	T	T	113798342	3	4	48	1	0	0	0	0	1	0	0	0	5379	1000	35	2	702	2	F10	13	113798342	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4018410	113798342	1371536	969	52556											
OR4M1	441670	broad.mit.edu	37	chr14	20248771	20248771	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gataatttcctttggtggatGcattgcacagctcttcttct	8	9	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20248771	A	A	20248771	3	1	48	1	0	0	0	0	1	0	0	0	11169	1319	46	4	292	4	OR4M1	14	20248771	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08		20248771	87100769	970	52557											
RBM23	55147	broad.mit.edu	37	chr14	23370874	23370874	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatggagaaatggggccaTggaagagtagatgtgaagtg	16	2	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23370874	C	C	23370874	1	2	48	0	1	0	0	0	0	0	0	0	13231	1479	51	5		5	RBM23	14	23370874	3'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3122103	23370874	83978666	971	52558											
CMA1	1215	broad.mit.edu	37	chr14	24976710	24976710	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctgtgcccccgatgatctCccctggaacagagcacccca	8	17	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24976710	T	T	24976710	3	4	48	1	0	0	0	0	1	0	0	0	3606	864	30	4	698	4	CMA1	14	24976710	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1605836	24976710	82372830	972	52559											
EGLN3	112399	broad.mit.edu	37	chr14	34395076	34395076	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttactaaaatgaacaaggCcagcagatttcagagcacgg	10	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34395076	A	A	34395076	1	1	48	0	1	0	0	0	0	0	0	0	5010	754	26	3		3	EGLN3	14	34395076	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9418366	34395076	72954464	973	52560											
CFL2	1073	broad.mit.edu	37	chr14	35182632	35182632	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcttcctctacaattaTttgtcttttgtcatcgctta	4	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35182632	A	A	35182632	3	1	48	1	0	0	0	0	1	0	0	0	3321	1493	52	5	373	5	CFL2	14	35182632	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	787556	35182632	72166908	974	52561											
LRFN5	145581	broad.mit.edu	37	chr14	42282594	42282594	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgatgttcccctccctGtgcccatatgttctcattgt	8	12	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42282594	C	C	42282594	1	2	48	0	1	0	0	0	0	0	0	0	9028	1392	48	4		4	LRFN5	14	42282594	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	7099962	42282594	65066946	975	52562											
RPL10L	140801	broad.mit.edu	37	chr14	47120507	47120507	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcttcaatcacatgctcctCgttctgaagcttggtgcgga	11	11	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47120507	A	A	47120507	4	1	48	1	0	0	0	0	0	1	0	0	13667	893	31	3	215	3	RPL10L	14	47120507	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4837913	47120507	60229033	976	52563											
MDGA2	161357	broad.mit.edu	37	chr14	47573658	47573658	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accttgtgaccccccactccTgcccactgagcaccttgcga	7	19	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47573658	A	A	47573658	1	1	48	0	1	0	0	0	0	0	0	0	9500	1595	55	5		5	MDGA2	14	47573658	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	453151	47573658	59775882	977	52564											
MDGA2	161357	broad.mit.edu	37	chr14	47669961	47669961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacttccagccaacctcGtgagccaggcgccccagtta	9	16	0	1	rs113480226		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47669961	T	T	47669961	1	4	48	0	1	0	0	0	0	0	0	0	9500	1160	40	3		3	MDGA2	14	47669961	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	96303	47669961	59679579	978	52565											
SLC35F4	341880	broad.mit.edu	37	chr14	58048191	58048191	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaatatccaggtactgatgGtgacacctcttgtcttatct	7	9	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58048191	A	A	58048191	1	1	48	0	1	0	0	0	0	0	0	0	14705	1276	44	4		4	SLC35F4	14	58048191	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	10378230	58048191	49301349	979	52566											
SLC35F4	341880	broad.mit.edu	37	chr14	58060567	58060567	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcataagagtccgtgtaAcatctctgcattctgtgaca	7	10	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58060567	C	C	58060567	1	2	48	0	1	0	0	0	0	0	0	0	14705	58	2	5		5	SLC35F4	14	58060567	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	12376	58060567	49288973	980	52567											
SLC38A6	145389	broad.mit.edu	37	chr14	61482646	61482646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacatcttatgaagatcttgGactctttgcatttggattac	7	7	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61482646	T	T	61482646	3	4	48	1	0	0	0	0	1	0	0	0	14722	1174	41	3	349	3	SLC38A6	14	61482646	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3422079	61482646	45866894	981	52568											
PRKCH	5583	broad.mit.edu	37	chr14	61656303	61656303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcacattttcctctccCctccgtccctccctccttcc	5	21	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61656303	A	A	61656303	1	1	48	0	1	0	0	0	0	0	0	0	12619	638	22	2		2	PRKCH	14	61656303	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	173657	61656303	45693237	982	52569											
PRKCH	5583	broad.mit.edu	37	chr14	61659325	61659325	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtggccaggtggtcaGggtagtgcccttggtagggt	19	7	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61659325	T	T	61659325	1	4	48	0	1	0	0	0	0	0	0	0	12619	1015	35	2		2	PRKCH	14	61659325	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3022	61659325	45690215	983	52570											
SPTB	6710	broad.mit.edu	37	chr14	65234298	65234299	+	Intron	INS	-	A	A													caccattctaagtacctaacINSaactggcctggagtccttac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65234299	A	A	65234298	6	5	48	0	1	1	1	0	0	0	0	0	15236	493	17	0		0	SPTB	14	65234298	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	3574973	65234298	42115242	984	52571											
RAB15	376267	broad.mit.edu	37	chr14	65417703	65417703	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtggaaggcaaagcttcctgGaagcatttgccttcccatct	10	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65417703	C	C	65417703	3	2	48	1	0	0	0	0	1	0	0	0	13009	1174	41	4	229	4	RAB15	14	65417703	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	183405	65417703	41931837	985	52572											
RAD51L1	5890	broad.mit.edu	37	chr14	69148361	69148361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacctgcctggaagatgacCagggagtgggcaaacttgga	15	8	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69148361	A	A	69148361	1	1	48	0	1	0	0	0	0	0	0	0	13097	609	21	2		2	RAD51L1	14	69148361	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3730658	69148361	38201179	986	52573											
ZFP36L1	677	broad.mit.edu	37	chr14	69259441	69259441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtgggaaggacggggCcaaattccttcaaacttggg	15	7	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69259441	A	A	69259441	1	1	48	0	1	0	0	0	0	0	0	0	17772	754	26	3		3	ZFP36L1	14	69259441	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	111080	69259441	38090099	987	52574											
SLC8A3	6547	broad.mit.edu	37	chr14	70512598	70512598	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcgggagagatcactgGtggggaagtgcccttctctt	15	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70512598	T	T	70512598	1	4	48	0	1	0	0	0	0	0	0	0	14822	1276	44	3		3	SLC8A3	14	70512598	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1253157	70512598	36836942	988	52575											
ADAM21	8747	broad.mit.edu	37	chr14	70925650	70925650	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccttccagaatggtgcaaTggaacatctcatcagtgtcc	9	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70925650	A	A	70925650	3	1	48	1	0	0	0	0	1	0	0	0	243	1461	51	5	1436	5	ADAM21	14	70925650	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	413052	70925650	36423890	989	52576											
MAP3K9	4293	broad.mit.edu	37	chr14	71199705	71199705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctgaaaaagaccctccCgtcttttcttctcctcccgg	5	17	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71199705	A	A	71199705	3	1	48	1	0	0	0	0	1	0	0	0	9349	652	23	1	941	1	MAP3K9	14	71199705	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	274055	71199705	36149835	990	52577											
PCNX	22990	broad.mit.edu	37	chr14	71489976	71489976	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactcttaatatggctgtacAttataggtccttaacattta	5	8	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71489976	G	G	71489976	1	3	48	0	1	0	0	0	0	0	0	0	11685	232	8	5		5	PCNX	14	71489976	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	290271	71489976	35859564	991	52578											
ACOT6	641372	broad.mit.edu	37	chr14	74083897	74083897	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatgctgcagcatccaaagGtgcgttctggtgatcacctg	11	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74083897	C	C	74083897	5	2	48	1	0	0	0	0	0	0	1	0	154	1275	44	4	21	4	ACOT6	14	74083897	Splice_Site	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2593921	74083897	33265643	992	52579											
LTBP2	4053	broad.mit.edu	37	chr14	75048590	75048590	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagagggagcgaccaggcagGagcagcctgctggaagccac	17	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75048590	T	T	75048590	1	4	48	0	1	0	0	0	0	0	0	0	9161	1189	41	3		3	LTBP2	14	75048590	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	964693	75048590	32300950	993	52580											
MLH3	27030	broad.mit.edu	37	chr14	75514425	75514425	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcaactgaatgacgtgttCtatttccaaatgtttcttgg	7	7	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75514425	T	T	75514425	3	4	48	1	0	0	0	0	1	0	0	0	9711	913	32	4	2475	4	MLH3	14	75514425	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	465835	75514425	31835115	994	52581											
C14orf148	122945	broad.mit.edu	37	chr14	77873817	77873817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacaagatacctgggtagtGggatggcagctacaaagctg	13	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77873817	T	T	77873817	3	4	48	1	0	0	0	0	1	0	0	0	1764	1348	47	2	643	2	C14orf148	14	77873817	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2359392	77873817	29475723	995	52582											
ADCK1	57143	broad.mit.edu	37	chr14	78353513	78353513	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtccacaaggcagtgctgcAtgatgggcggacggtggccg	18	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78353513	T	T	78353513	3	4	48	1	0	0	0	0	1	0	0	0	288	217	8	5	517	5	ADCK1	14	78353513	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	479696	78353513	28996027	996	52583											
NRXN3	9369	broad.mit.edu	37	chr14	78692324	78692325	+	Intron	DNP	GT	TG	TG													gtgtgtgtgtgttggtgtgtGtgtgtgtgtgtgtgtgtgtg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	78692325	TG	TG	78692324	1	4	48	0	1	0	0	0	0	0	0	0	10762	1392	48	3		3	NRXN3	14	78692324	Intron	DNP	GT	TCGA-17-Z015-01A-01W-0746-08	338811	78692324	28657216	997	52584											
NRXN3	9369	broad.mit.edu	37	chr14	79200292	79200292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacatgaagtctattgaaCaaagaccctgctcttactgt	7	9	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79200292	A	A	79200292	1	1	48	0	1	0	0	0	0	0	0	0	10762	493	17	3		3	NRXN3	14	79200292	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	507968	79200292	28149248	998	52585											
NRXN3	9369	broad.mit.edu	37	chr14	79423462	79423462	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaattcgaatggacttTgggtggaatataattccttg	10	4	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79423462	A	A	79423462	1	1	48	0	1	0	0	0	0	0	0	0	10762	1827	63	5		5	NRXN3	14	79423462	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	223170	79423462	27926078	999	52586											
DIO2	1734	broad.mit.edu	37	chr14	80677673	80677673	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcgccgccactctccgCgagtggacttggagcggctc	14	15	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80677673	T	T	80677673	3	4	48	1	0	0	0	0	1	0	0	0	4565	768	27	4	798	4	DIO2	14	80677673	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1254211	80677673	26671867	1000	52587											
ZC3H14	79882	broad.mit.edu	37	chr14	89041146	89041146	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatgatgattacgggtctcGaacaggaagcatctccagca	11	9	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89041146	T	T	89041146	3	4	48	1	0	0	0	0	1	0	0	0	17692	1058	37	3	997	3	ZC3H14	14	89041146	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8363473	89041146	18308394	1001	52588											
KIAA1409	57578	broad.mit.edu	37	chr14	94053361	94053361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgggttattttttgagcCaggacagctcgattgcctat	11	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94053361	A	A	94053361	1	1	48	0	1	0	0	0	0	0	0	0	8300	609	21	2		2	KIAA1409	14	94053361	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5012215	94053361	13296179	1002	52589											
KIAA1409	57578	broad.mit.edu	37	chr14	94084621	94084621	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acactcaatgcgcagtatcaTagctgcaagccccatgccac	7	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94084621	A	A	94084621	3	1	48	1	0	0	0	0	1	0	0	0	8300	1403	49	5	3879	5	KIAA1409	14	94084621	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	31260	94084621	13264919	1003	52590											
KIAA1409	57578	broad.mit.edu	37	chr14	94089145	94089145	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagagagtacctcgacatcTccttcaacattctggacaaa	7	11	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94089145	C	C	94089145	3	2	48	1	0	0	0	0	1	0	0	0	8300	1551	54	5	5141	5	KIAA1409	14	94089145	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	4524	94089145	13260395	1004	52591											
KIAA1409	57578	broad.mit.edu	37	chr14	94129095	94129095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgtgtgttcctgtgaaaCtgaaaactggcagaaatata	9	5	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94129095	A	A	94129095	1	1	48	0	1	0	0	0	0	0	0	0	8300	580	20	3		3	KIAA1409	14	94129095	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	39950	94129095	13220445	1005	52592											
FAM181A	90050	broad.mit.edu	37	chr14	94391751	94391751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgccagctgctggagagGttcaaactgttggctgtgca	14	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94391751	T	T	94391751	1	4	48	0	1	0	0	0	0	0	0	0	5554	1276	44	3		3	FAM181A	14	94391751	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	262656	94391751	12957789	1006	52593											
SERPINA4	5267	broad.mit.edu	37	chr14	95035874	95035874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttccttgtggtgatcttttCcaccagcacccagagtgtcc	8	14	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95035874	A	A	95035874	3	1	48	1	0	0	0	0	1	0	0	0	14204	855	30	3	1240	3	SERPINA4	14	95035874	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	644123	95035874	12313666	1007	52594											
ATG2B	55102	broad.mit.edu	37	chr14	96794827	96794827	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactggatttaatttaatttGcaattctgccttgtgaggaa	8	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96794827	A	A	96794827	4	1	48	1	0	0	0	0	0	1	0	0	1098	1328	46	4	4332	4	ATG2B	14	96794827	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1758953	96794827	10554713	1008	52595											
PAPOLA	10914	broad.mit.edu	37	chr14	97009236	97009236	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatcccgacaagtaagCccttttctaatttaatttct	4	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97009236	G	G	97009236	1	3	48	0	1	0	0	0	0	0	0	0	11523	754	26	4		4	PAPOLA	14	97009236	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	214409	97009236	10340304	1009	52596											
DYNC1H1	1778	broad.mit.edu	37	chr14	102474633	102474633	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcaggtgcagtgcatacAggaagcactgcgtgaacatt	12	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102474633	G	G	102474633	3	3	48	1	0	0	0	0	1	0	0	0	4881	188	7	5	6050	5	DYNC1H1	14	102474633	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	5465397	102474633	4874907	1010	52597											
DYNC1H1	1778	broad.mit.edu	37	chr14	102502947	102502947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaagaacttagagagtGcactgagattcggtaacccc	10	9	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102502947	T	T	102502947	3	4	48	1	0	0	0	0	1	0	0	0	4881	1319	46	3	11102	3	DYNC1H1	14	102502947	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	28314	102502947	4846593	1011	52598											
GABRB3	2562	broad.mit.edu	37	chr15	27138984	27138984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggggacccgcgtgggCagcagcatggaccggggcgt	20	12	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27138984	A	A	27138984	1	1	48	0	1	0	0	0	0	0	0	0	6228	725	25	3		3	GABRB3	15	27138984	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08		27138984	75392408	1012	52599											
C15orf55	256646	broad.mit.edu	37	chr15	34640442	34640442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagtcaagacagaagggGggtcagctgagccctctcaa	12	10	4	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34640442	T	T	34640442	3	4	48	1	0	0	0	0	1	0	0	0	1816	1232	43	2	295	2	C15orf55	15	34640442	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	7501458	34640442	67890950	1013	52600											
EIF2AK4	440275	broad.mit.edu	37	chr15	40226638	40226638	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agattgggccgccgctttagGatcctgcagtcttttcatcc	10	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40226638	A	A	40226638	1	1	48	0	1	0	0	0	0	0	0	0	5039	1189	41	4		4	EIF2AK4	15	40226638	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5586196	40226638	62304754	1014	52601											
RPAP1	26015	broad.mit.edu	37	chr15	41815414	41815414	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaattgcctcctcccctgcTtcccccagctaccaaacaca	4	19	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41815414	A	A	41815414	1	1	48	0	1	0	0	0	0	0	0	0	13652	1624	56	5		5	RPAP1	15	41815414	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1588776	41815414	60715978	1015	52602											
TGM5	9333	broad.mit.edu	37	chr15	43526973	43526973	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggactcctgcctacattaatCgtgatgcttggataagataa	9	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43526973	T	T	43526973	2	4	48	1	0	0	0	0	0	0	0	1	15956	871	31	4		4	TGM5	15	43526973	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1711559	43526973	59004419	1016	52603											
FRMD5	84978	broad.mit.edu	37	chr15	44282099	44282099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccttggcagccacacaCagctcgttgtagaaggtgtg	12	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44282099	A	A	44282099	1	1	48	0	1	0	0	0	0	0	0	0	6113	493	17	3		3	FRMD5	15	44282099	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	755126	44282099	58249293	1017	52604											
SLC28A2	9153	broad.mit.edu	37	chr15	45554362	45554362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttagaaatttgccttGtgtcaaggtgattaccaggt	9	5	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45554362	T	T	45554362	1	4	48	0	1	0	0	0	0	0	0	0	14646	1392	48	3		3	SLC28A2	15	45554362	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1272263	45554362	56977030	1018	52605											
FBN1	2200	broad.mit.edu	37	chr15	48782324	48782324	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagagccacacggcttccacTgccccaaactgccaacactc	6	18	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48782324	A	A	48782324	1	1	48	0	1	0	0	0	0	0	0	0	5759	1595	55	5		5	FBN1	15	48782324	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3227962	48782324	53749068	1019	52606											
ALDH1A2	8854	broad.mit.edu	37	chr15	58492793	58492793	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatctccagcactgtgagaGgaaccgccaccatgtctgtg	10	14	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58492793	A	A	58492793	1	1	48	0	1	0	0	0	0	0	0	0	491	1015	35	4		4	ALDH1A2	15	58492793	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	9710469	58492793	44038599	1020	52607											
RORA	6095	broad.mit.edu	37	chr15	61152120	61152120	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctcagccctgcagccgatCcctgacataaactccttgaa	6	16	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61152120	G	G	61152120	1	3	48	0	1	0	0	0	0	0	0	0	13639	870	30	4		4	RORA	15	61152120	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2659327	61152120	41379272	1021	52608											
TLN2	83660	broad.mit.edu	37	chr15	63073493	63073493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgcctttttatccactGccgccgctgagcctgcaaat	8	13	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63073493	T	T	63073493	1	4	48	0	1	0	0	0	0	0	0	0	16071	1334	46	3		3	TLN2	15	63073493	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1921373	63073493	39457899	1022	52609											
DAPK2	23604	broad.mit.edu	37	chr15	64320965	64320965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgtaggtaggcaggtagaCagacagacagacagacagat	13	7	0	6			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64320965	A	A	64320965	1	1	48	0	1	0	0	0	0	0	0	0	4269	493	17	3		3	DAPK2	15	64320965	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1247472	64320965	38210427	1023	52610											
RBPMS2	348093	broad.mit.edu	37	chr15	65041462	65041462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgaagacctgcccacaCggtggctgaggcagaggaaa	14	12	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65041462	A	A	65041462	1	1	48	0	1	0	0	0	0	0	0	0	13272	551	19	3		3	RBPMS2	15	65041462	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	720497	65041462	37489930	1024	52611											
CILP	8483	broad.mit.edu	37	chr15	65501959	65501959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttaaggcagatgcatagTtcagtcccagaccagacaca	9	11	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65501959	C	C	65501959	1	2	48	0	1	0	0	0	0	0	0	0	3460	1740	60	5		5	CILP	15	65501959	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	460497	65501959	37029433	1025	52612											
PML	5371	broad.mit.edu	37	chr15	74325121	74325121	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccaccaggaaagtgagctGgcactggggtgggaatccag	15	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74325121	C	C	74325121	1	2	48	0	1	0	0	0	0	0	0	0	12230	1363	47	4		4	PML	15	74325121	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8823162	74325121	28206271	1026	52613											
STRA6	64220	broad.mit.edu	37	chr15	74477340	74477340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgtgtcaccagtgagcGcatcaggaccaggaaggtga	14	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74477340	A	A	74477340	3	1	48	1	0	0	0	0	1	0	0	0	15440	1087	38	4	884	4	STRA6	15	74477340	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	152219	74477340	28054052	1027	52614											
PPCDC	60490	broad.mit.edu	37	chr15	75341301	75341301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacacgcagttaaggatGgctactggaacgagtcccag	12	12	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75341301	T	T	75341301	1	4	48	0	1	0	0	0	0	0	0	0	12400	1363	47	2		2	PPCDC	15	75341301	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	863961	75341301	27190091	1028	52615											
GOLGA6C	653641	broad.mit.edu	37	chr15	75555890	75555890	+	Intron	DEL	G	-	-													gataacctggtcccatgggtGggcctgtcctggggcattgg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75555890	-	-	75555890	6	5	48	0	1	1	0	1	0	0	0	0	6623	1363	47	0		0	GOLGA6C	15	75555890	Intron	DEL	G	TCGA-17-Z015-01A-01W-0746-08	214589	75555890	26975502	1029	52616											
CHRNB4	1143	broad.mit.edu	37	chr15	78917468	78917468	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctcaccccacaacccagGgggccctcagtcacgctggg	10	19	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78917468	T	T	78917468	1	4	48	0	1	0	0	0	0	0	0	0	3424	1247	43	2		2	CHRNB4	15	78917468	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3361578	78917468	23613924	1030	52617											
KIAA1199	57214	broad.mit.edu	37	chr15	81171177	81171177	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgctcacctcttctgcCacggtctattccatccacat	5	17	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81171177	A	A	81171177	2	1	48	1	0	0	0	0	0	0	0	1	8283	581	21	2		2	KIAA1199	15	81171177	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2253709	81171177	21360215	1031	52618											
AP3B2	8120	broad.mit.edu	37	chr15	83332301	83332301	+	Intron	DEL	C	-	-													ttcccctgtgacttttaccaCccaaactcacaatcctctag							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83332301	-	-	83332301	6	5	48	0	1	1	0	1	0	0	0	0	747	522	18	0		0	AP3B2	15	83332301	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	2161124	83332301	19199091	1032	52619											
AGBL1	123624	broad.mit.edu	37	chr15	86994434	86994434	+	Intron	DEL	C	-	-													ctaaatttcagcatgtgtgaCtttctcagtacttcttgggc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86994434	-	-	86994434	6	5	48	0	1	1	0	1	0	0	0	0	375	580	20	0		0	AGBL1	15	86994434	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	3662133	86994434	15536958	1033	52620											
AGBL1	123624	broad.mit.edu	37	chr15	87468523	87468523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggtgattgattggggaGgtatatggtagagtctaata	14	3	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87468523	T	T	87468523	1	4	48	0	1	0	0	0	0	0	0	0	375	1015	35	2		2	AGBL1	15	87468523	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	474089	87468523	15062869	1034	52621											
NTRK3	4916	broad.mit.edu	37	chr15	88525844	88525844	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctctgggatctttttggGaaagggagggacactgtaaa	15	5	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88525844	T	T	88525844	1	4	48	0	1	0	0	0	0	0	0	0	10803	1189	41	3		3	NTRK3	15	88525844	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1057321	88525844	14005548	1035	52622											
NTRK3	4916	broad.mit.edu	37	chr15	88667299	88667299	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggggggcttagaattttaTttttgttttgcacttattta	9	3	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88667299	A	A	88667299	1	1	48	0	1	0	0	0	0	0	0	0	10803	1508	52	5		5	NTRK3	15	88667299	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	141455	88667299	13864093	1036	52623											
ACAN	176	broad.mit.edu	37	chr15	89416277	89416277	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagctggcgcctgggaggGgtcaggggaggataggatca	20	6	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89416277	A	A	89416277	1	1	48	0	1	0	0	0	0	0	0	0	117	1247	43	4		4	ACAN	15	89416277	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	748978	89416277	13115115	1037	52624											
ABHD2	11057	broad.mit.edu	37	chr15	89698859	89698859	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttaagttttaaacctAtgcccatctgcaagagatgg	7	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89698859	G	G	89698859	1	3	48	0	1	0	0	0	0	0	0	0	82	464	16	5		5	ABHD2	15	89698859	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	282582	89698859	12832533	1038	52625											
ANPEP	290	broad.mit.edu	37	chr15	90334395	90334395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaacttggactgtcccaCgcacatcacctatgcctgca	8	14	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90334395	T	T	90334395	1	4	48	0	1	0	0	0	0	0	0	0	710	551	19	4		4	ANPEP	15	90334395	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	635536	90334395	12196997	1039	52626											
IGF1R	3480	broad.mit.edu	37	chr15	99250729	99250729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaactgtattattgtttGgaaaatagtttaaaaattat	5	3	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99250729	T	T	99250729	1	4	48	0	1	0	0	0	0	0	0	0	7641	1363	47	2		2	IGF1R	15	99250729	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8916334	99250729	3280663	1040	52627											
RHBDF1	64285	broad.mit.edu	37	chr16	108670	108670	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagcttgaagaaggcaCgccagggccgcgccaggatc	14	14	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108670	T	T	108670	3	4	48	1	0	0	0	0	1	0	0	0	13428	536	19	4	334	4	RHBDF1	16	108670	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08		108670	90246083	1041	52628											
RHBDF1	64285	broad.mit.edu	37	chr16	112636	112636	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcctttagcgctgcctccgAtggggactcgaaaacttcat	10	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112636	T	T	112636	3	4	48	1	0	0	0	0	1	0	0	0	13428	333	12	5	1762	5	RHBDF1	16	112636	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3966	112636	90242117	1042	52629											
PTX4	390667	broad.mit.edu	37	chr16	1536155	1536155	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatccgccccccacgctgtCttgttcctggcccagcacga	9	18	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1536155	T	T	1536155	3	4	48	1	0	0	0	0	1	0	0	0	12931	913	32	4	217	4	PTX4	16	1536155	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1423519	1536155	88818598	1043	52630											
DNAJA3	9093	broad.mit.edu	37	chr16	4492463	4492463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctcccacggcttgcaccActgactgagaagagctggtt	10	14	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4492463	G	G	4492463	1	3	48	0	1	0	0	0	0	0	0	0	4653	174	6	5		5	DNAJA3	16	4492463	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2956308	4492463	85862290	1044	52631											
A2BP1	54715	broad.mit.edu	37	chr16	6564019	6564019	+	Intron	DEL	T	-	-													gcaaatggcgcatgtccaccTtacagagaatcaacacctca							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6564019	-	-	6564019	6	5	48	0	1	1	0	1	0	0	0	0	3	1624	56	0		0	A2BP1	16	6564019	Intron	DEL	T	TCGA-17-Z015-01A-01W-0746-08	2071556	6564019	83790734	1045	52632											
A2BP1	54715	broad.mit.edu	37	chr16	7210838	7210840	+	Intron	DEL	TCC	-	-													cctccctcctccctcctcctTcctcctcctcctcctcctcc					rs111754952		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7210840	-	-	7210838	6	5	48	0	1	1	0	1	0	0	0	0	3	1798	62	0		0	A2BP1	16	7210838	Intron	DEL	TCC	TCGA-17-Z015-01A-01W-0746-08	646819	7210838	83143915	1046	52633											
C16orf75	116028	broad.mit.edu	37	chr16	11444629	11444629	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactggaggtagaagatttAcacaggaatattccttagag	11	5	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11444629	G	G	11444629	2	3	48	1	0	0	0	0	0	0	0	1	1848	388	14	5		5	C16orf75	16	11444629	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4233791	11444629	78910124	1047	52634											
GP2	2813	broad.mit.edu	37	chr16	20327418	20327418	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatgcctggattctatctAgactgctcctacaatgggca	8	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20327418	G	G	20327418	1	3	48	0	1	0	0	0	0	0	0	0	6647	435	15	5		5	GP2	16	20327418	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	8882789	20327418	70027335	1048	52635											
ACSM2A	123876	broad.mit.edu	37	chr16	20482944	20482944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgctcacttatggaacCttgggcattaggagcatgca	11	9	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20482944	A	A	20482944	3	1	48	1	0	0	0	0	1	0	0	0	183	681	24	2	845	2	ACSM2A	16	20482944	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	155526	20482944	69871809	1049	52636											
ERN2	10595	broad.mit.edu	37	chr16	23718103	23718103	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgtagaggcggggggtGgagggaccctctgtggtcag	19	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23718103	A	A	23718103	2	1	48	1	0	0	0	0	0	0	0	1	5280	1335	47	4		4	ERN2	16	23718103	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3235159	23718103	66636650	1050	52637											
RBBP6	5930	broad.mit.edu	37	chr16	24578601	24578601	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatacacttcctctccctcCgggtgttcctcctccacagt	5	19	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24578601	T	T	24578601	3	4	48	1	0	0	0	0	1	0	0	0	13211	652	23	4	1839	4	RBBP6	16	24578601	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	860498	24578601	65776152	1051	52638											
TNRC6A	27327	broad.mit.edu	37	chr16	24802584	24802584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggccaataagaaatccaGctcaggaggtagtgacagtg	13	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24802584	T	T	24802584	3	4	48	1	0	0	0	0	1	0	0	0	16463	971	34	3	2643	3	TNRC6A	16	24802584	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	223983	24802584	65552169	1052	52639											
HS3ST4	9951	broad.mit.edu	37	chr16	25881844	25881844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacagcaaatgggaagtcCctgagatggaagcttcagaa	13	7	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25881844	A	A	25881844	1	1	48	0	1	0	0	0	0	0	0	0	7434	638	22	2		2	HS3ST4	16	25881844	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1079260	25881844	64472909	1053	52640											
HS3ST4	9951	broad.mit.edu	37	chr16	26044058	26044058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttagcagacaacctcgcGgatcttctctgtggttcgtc	11	11	2	1	rs150536058	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26044058	T	T	26044058	1	4	48	0	1	0	0	0	0	0	0	0	7434	1131	39	1		1	HS3ST4	16	26044058	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	162214	26044058	64310695	1054	52641											
SEZ6L2	26470	broad.mit.edu	37	chr16	29908169	29908169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaccgtagtggtaacaGttgtcgtggtgatgatggtg	16	5	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29908169	T	T	29908169	3	4	48	1	0	0	0	0	1	0	0	0	14257	1029	36	3	2350	3	SEZ6L2	16	29908169	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3864111	29908169	60446584	1055	52642											
ITGAD	3681	broad.mit.edu	37	chr16	31422329	31422329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctggtacctggggagagGcgggaccctggcccacaggg	18	12	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31422329	T	T	31422329	1	4	48	0	1	0	0	0	0	0	0	0	7954	1218	42	3		3	ITGAD	16	31422329	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1514160	31422329	58932424	1056	52643											
MYLK3	91807	broad.mit.edu	37	chr16	46766387	46766387	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctgcagcggggagagctCtctggctccttcaggggtct	14	13	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46766387	A	A	46766387	4	1	48	1	0	0	0	0	0	1	0	0	10152	922	32	3	1304	3	MYLK3	16	46766387	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	15344058	46766387	43588366	1057	52644											
PHKB	5257	broad.mit.edu	37	chr16	47533764	47533764	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaagatccaggacagcctAtactgcgctgctggggcctg	13	13	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47533764	G	G	47533764	2	3	48	1	0	0	0	0	0	0	0	1	11940	436	16	5		5	PHKB	16	47533764	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	767377	47533764	42820989	1058	52645											
PHKB	5257	broad.mit.edu	37	chr16	47632620	47632620	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccactaatggcgcccatgGtttccactccctcatttttc	5	15	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47632620	A	A	47632620	1	1	48	0	1	0	0	0	0	0	0	0	11940	1276	44	4		4	PHKB	16	47632620	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	98856	47632620	42722133	1059	52646											
ZNF423	23090	broad.mit.edu	37	chr16	49671947	49671947	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacagaggcgctggagtcGggtgtggcgctgctcatgga	17	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49671947	T	T	49671947	2	4	48	1	0	0	0	0	0	0	0	1	18025	1103	39	1		1	ZNF423	16	49671947	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2039327	49671947	40682806	1060	52647											
SALL1	6299	broad.mit.edu	37	chr16	51172874	51172874	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgaagccgttgacctctgTcttgatgagagatgacaacg	11	10	2	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51172874	C	C	51172874	3	2	48	1	0	0	0	0	1	0	0	0	13921	1667	58	5	723	5	SALL1	16	51172874	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1500927	51172874	39181879	1061	52648											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53672396	53672396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccaaatcattctatcataTacatattgaactactaaaaa	1	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53672396	C	C	53672396	1	2	48	0	1	0	0	0	0	0	0	0	13661	1421	49	5		5	RPGRIP1L	16	53672396	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2499522	53672396	36682357	1062	52649											
LPCAT2	54947	broad.mit.edu	37	chr16	55565831	55565831	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttttttcccaagatactAgttttcccagaaggtacttg	6	10	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55565831	T	T	55565831	2	4	48	1	0	0	0	0	0	0	0	1	8998	407	15	5		5	LPCAT2	16	55565831	Silent	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1893435	55565831	34788922	1063	52650											
BBS2	583	broad.mit.edu	37	chr16	56531833	56531833	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtttagcatcctcagatGttagacaaacttagctaaaa	6	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56531833	A	A	56531833	1	1	48	0	1	0	0	0	0	0	0	0	1343	1392	48	4		4	BBS2	16	56531833	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	966002	56531833	33822920	1064	52651											
CX3CL1	6376	broad.mit.edu	37	chr16	57416912	57416912	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctacatcccccggagctgtGgtagtaattcatatgtcctg	10	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57416912	C	C	57416912	3	2	48	1	0	0	0	0	1	0	0	0	4107	1348	47	4	1172	4	CX3CL1	16	57416912	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	885079	57416912	32937841	1065	52652											
CMTM1	113540	broad.mit.edu	37	chr16	66600377	66600377	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggagagccagccgctgcCgcggcactggttcagacggc	17	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66600377	T	T	66600377	1	4	48	0	1	0	0	0	0	0	0	0	3614	667	23	4		4	CMTM1	16	66600377	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9183465	66600377	23754376	1066	52653											
EXOC3L	283849	broad.mit.edu	37	chr16	67220986	67220986	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccaaggtcagaaggggctCcagctgggacacatcagcct	12	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67220986	G	G	67220986	3	3	48	1	0	0	0	0	1	0	0	0	5346	864	30	4	1180	4	EXOC3L	16	67220986	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	620609	67220986	23133767	1067	52654											
WWP2	11060	broad.mit.edu	37	chr16	69942788	69942788	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagacctgagactctggAactgacaccatgagtcaccc	10	12	2	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69942788	G	G	69942788	1	3	48	0	1	0	0	0	0	0	0	0	17543	261	9	5		5	WWP2	16	69942788	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2721802	69942788	20411965	1068	52655											
ST3GAL2	6483	broad.mit.edu	37	chr16	70432294	70432295	+	Missense_Mutation	DNP	CG	AA	AA													agccgggcaccagcttcaccCggtgcgtcccatccagggcc					rs149280914		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70432295	AA	AA	70432294	3	1	48	1	0	0	0	0	1	0	0	0	15333	652	23	1	936	1	ST3GAL2	16	70432294	Missense_Mutation	DNP	CG	TCGA-17-Z015-01A-01W-0746-08	489506	70432294	19922459	1069	52656											
LDHD	197257	broad.mit.edu	37	chr16	75147927	75147927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtccacagcagcctggaCactggggaacgcacacgtgg	14	13	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75147927	A	A	75147927	3	1	48	1	0	0	0	0	1	0	0	0	8775	478	17	3	712	3	LDHD	16	75147927	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4715633	75147927	15206826	1070	52657											
WWOX	51741	broad.mit.edu	37	chr16	78979543	78979543	+	Intron	DEL	T	-	-													actggttttatttctaaggaTttttttttaagttggcatct					rs71726401		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78979543	-	-	78979543	6	5	48	0	1	1	0	1	0	0	0	0	17541	1508	52	0		0	WWOX	16	78979543	Intron	DEL	T	TCGA-17-Z015-01A-01W-0746-08	3831616	78979543	11375210	1071	52658											
SLC38A8	146167	broad.mit.edu	37	chr16	84066907	84066907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagcaaggtgggggcccCcaccaggcagcatcccagcc	12	17	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84066907	A	A	84066907	1	1	48	0	1	0	0	0	0	0	0	0	14724	638	22	2		2	SLC38A8	16	84066907	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5087364	84066907	6287846	1072	52659											
FOXL1	2300	broad.mit.edu	37	chr16	86612523	86612523	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccatggcgatccaggacgCgcccgagcagagggtcacgc	15	15	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86612523	T	T	86612523	3	4	48	1	0	0	0	0	1	0	0	0	6076	768	27	4	196	4	FOXL1	16	86612523	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2545616	86612523	3742230	1073	52660											
TUSC5	286753	broad.mit.edu	37	chr17	1198690	1198690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggatgtgtctggaggccCaggctcagggccaccccagg	16	13	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1198690	A	A	1198690	1	1	48	0	1	0	0	0	0	0	0	0	16905	609	21	2		2	TUSC5	17	1198690	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08		1198690	79996520	1074	52661											
PAFAH1B1	5048	broad.mit.edu	37	chr17	2583589	2583589	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatgaagaccctcaatgcGcatgaacactttgttacctc	7	12	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2583589	T	T	2583589	2	4	48	1	0	0	0	0	0	0	0	1	11478	1074	38	3		3	PAFAH1B1	17	2583589	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1384899	2583589	78611621	1075	52662											
TRPV3	162514	broad.mit.edu	37	chr17	3427682	3427682	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggagacacaggagacacGggccttacttacttctcagc	10	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3427682	A	A	3427682	1	1	48	0	1	0	0	0	0	0	0	0	16722	1131	39	4		4	TRPV3	17	3427682	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	844093	3427682	77767528	1076	52663											
TM4SF5	9032	broad.mit.edu	37	chr17	4675171	4675171	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctctggacctgggaaCcactggcttactttcactca	7	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4675171	A	A	4675171	1	1	48	0	1	0	0	0	0	0	0	0	16094	522	18	3		3	TM4SF5	17	4675171	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1247489	4675171	76520039	1077	52664											
NLRP1	22861	broad.mit.edu	37	chr17	5425044	5425044	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccaccctggctggcttctCcaggagcatcccctcctctt	7	19	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5425044	G	G	5425044	3	3	48	1	0	0	0	0	1	0	0	0	10566	864	30	4	921	4	NLRP1	17	5425044	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	749873	5425044	75770166	1078	52665											
SLC13A5	284111	broad.mit.edu	37	chr17	6610463	6610463	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgaggatgatgacgtaggCacacctgacaaactgaagag	12	8	0	6			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6610463	G	G	6610463	3	3	48	1	0	0	0	0	1	0	0	0	14508	710	25	4	1635	4	SLC13A5	17	6610463	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1185419	6610463	74584747	1079	52666											
TP53	7157	broad.mit.edu	37	chr17	7579358	7579358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatgcaagaagcccagaCggaaaccgtagctgccctgg	12	12	0	3	rs11540654		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579358	A	A	7579358	3	1	48	1	0	0	0	0	1	0	0	0	16505	536	19	3	973	3	TP53	17	7579358	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	968895	7579358	73615852	1080	52667											
TP53	7157	broad.mit.edu	37	chr17	7579752	7579752	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcagaaagtcagtcccaTggaattttcgcttcccacag	9	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7579752	C	C	7579752	1	2	48	0	1	0	0	0	0	0	0	0	16505	1479	51	5		5	TP53	17	7579752	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	394	7579752	73615458	1081	52668											
CCDC42	146849	broad.mit.edu	37	chr17	8644891	8644891	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagccgcagcgccaccatCtcctgcttgcgcttggtcag	10	17	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8644891	G	G	8644891	3	3	48	1	0	0	0	0	1	0	0	0	2841	912	32	4	573	4	CCDC42	17	8644891	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1065139	8644891	72550319	1082	52669											
GAS7	8522	broad.mit.edu	37	chr17	9823044	9823044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaaagaccacagtcacCatcatgaagcatcctatcct	6	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9823044	A	A	9823044	1	1	48	0	1	0	0	0	0	0	0	0	6312	609	21	2		2	GAS7	17	9823044	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1178153	9823044	71372166	1083	52670											
GAS7	8522	broad.mit.edu	37	chr17	9901161	9901161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttattacacaggctatgaCaaaggatacagatgaagagg	10	6	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9901161	A	A	9901161	1	1	48	0	1	0	0	0	0	0	0	0	6312	493	17	3		3	GAS7	17	9901161	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	78117	9901161	71294049	1084	52671											
MYH13	8735	broad.mit.edu	37	chr17	10215525	10215525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgaagaaggaggaggagCactgttctagatcagggacc	15	7	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10215525	A	A	10215525	1	1	48	0	1	0	0	0	0	0	0	0	10126	725	25	3		3	MYH13	17	10215525	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	314364	10215525	70979685	1085	52672											
MYH1	4619	broad.mit.edu	37	chr17	10406597	10406598	+	Intron	INS	-	T	T													aatagatattttagattttaINStgaaaattcctagacatttt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10406598	T	T	10406597	6	5	48	0	1	1	1	0	0	0	0	0	10123	464	16	0		0	MYH1	17	10406597	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	191072	10406597	70788613	1086	52673											
MYH2	4620	broad.mit.edu	37	chr17	10433079	10433079	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaaggtgaagaaagcagTttagttgctataaagcacct	9	6	0	2	rs140153513	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10433079	C	C	10433079	1	2	48	0	1	0	0	0	0	0	0	0	10129	1740	60	5		5	MYH2	17	10433079	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	26482	10433079	70762131	1087	52674											
DNAH9	1770	broad.mit.edu	37	chr17	11593663	11593663	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtccacagtggacgctgtCatctctatctggtttgaagt	10	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11593663	G	G	11593663	2	3	48	1	0	0	0	0	0	0	0	1	4648	813	29	4		4	DNAH9	17	11593663	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1160584	11593663	69601547	1088	52675											
HS3ST3B1	9953	broad.mit.edu	37	chr17	14205337	14205337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgacgtgcgcgccgtgggcGccgagccccatttcttcgat	13	16	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14205337	T	T	14205337	3	4	48	1	0	0	0	0	1	0	0	0	7433	1087	38	3	504	3	HS3ST3B1	17	14205337	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2611674	14205337	66989873	1089	52676											
LRRC48	83450	broad.mit.edu	37	chr17	17900918	17900918	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggagcagggcaaacgcaaGattgccaaattcgaggagaa	13	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17900918	T	T	17900918	3	4	48	1	0	0	0	0	1	0	0	0	9092	933	33	3	995	3	LRRC48	17	17900918	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3695581	17900918	63294292	1090	52677											
SLC6A4	6532	broad.mit.edu	37	chr17	28530395	28530395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacattaaaaaccttaaCaatatccactcagatagaga	4	8	1	3	rs56162408		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28530395	A	A	28530395	1	1	48	0	1	0	0	0	0	0	0	0	14800	493	17	3		3	SLC6A4	17	28530395	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	10629477	28530395	52664815	1091	52678											
NF1	4763	broad.mit.edu	37	chr17	29559881	29559881	+	Frame_Shift_Del	DEL	G	-	-													tcaatgccaacgtagacagtGgtctcatgcactccataggt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29559881	-	-	29559881	7	5	48	1	0	1	0	1	0	0	0	0	10451	1348	47	0	3641	0	NF1	17	29559881	Frame_Shift_Del	DEL	G	TCGA-17-Z015-01A-01W-0746-08	1029486	29559881	51635329	1092	52679											
NF1	4763	broad.mit.edu	37	chr17	29654664	29654664	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccttaaccattgcaaacCagggcacgccgctcaccttc	6	17	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29654664	T	T	29654664	4	4	48	1	0	0	0	0	0	1	0	0	10451	595	21	4	5627	4	NF1	17	29654664	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	94783	29654664	51540546	1093	52680											
ACCN1	40	broad.mit.edu	37	chr17	32014679	32014679	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgccaaaagatgaatccaGacagttcatgggccatctcc	10	11	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32014679	T	T	32014679	1	4	48	0	1	0	0	0	0	0	0	0	128	957	33	3		3	ACCN1	17	32014679	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2360015	32014679	49180531	1094	52681											
TMEM132E	124842	broad.mit.edu	37	chr17	32959924	32959924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtacctatcctccccgacCggaggtacagcccctctccc	9	19	1	0	rs148901847	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32959924	G	G	32959924	3	3	48	1	0	0	0	0	1	0	0	0	16171	643	23	4	1440	4	TMEM132E	17	32959924	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	945245	32959924	48235286	1095	52682											
ACACA	31	broad.mit.edu	37	chr17	35444174	35444174	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctcctgtgccttctcatTacagtggttacagttgtaaa	9	9	2	0	rs3214149		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35444174	A	A	35444174	1	1	48	0	1	0	0	0	0	0	0	0	106	1769	61	5		5	ACACA	17	35444174	3'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2484250	35444174	45751036	1096	52683											
STARD3	10948	broad.mit.edu	37	chr17	37815776	37815776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaccagatcttggcccaGgaagagaactggaagtttga	14	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37815776	T	T	37815776	3	4	48	1	0	0	0	0	1	0	0	0	15375	991	35	2	808	2	STARD3	17	37815776	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2371602	37815776	43379434	1097	52684											
GRB7	2886	broad.mit.edu	37	chr17	37903138	37903138	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgccattgctgcacgcgGgtggccctctgaccaggccg	14	16	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37903138	A	A	37903138	2	1	48	1	0	0	0	0	0	0	0	1	6825	1219	43	4		4	GRB7	17	37903138	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	87362	37903138	43292072	1098	52685											
PSMD3	5709	broad.mit.edu	37	chr17	38140627	38140627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcgggccctgcggatgCtgccttccacatcacgccgc	12	17	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38140627	A	A	38140627	3	1	48	1	0	0	0	0	1	0	0	0	12805	796	28	3	307	3	PSMD3	17	38140627	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	237489	38140627	43054583	1099	52686											
KRT25	147183	broad.mit.edu	37	chr17	38907509	38907509	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttcagcagaactgtgaggtCcaccccgggggctgcgttca	14	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38907509	G	G	38907509	3	3	48	1	0	0	0	0	1	0	0	0	8533	855	30	4	633	4	KRT25	17	38907509	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	766882	38907509	42287701	1100	52687											
KRT28	162605	broad.mit.edu	37	chr17	38956215	38956215	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagaacagaatatcatgcaCtgataatttctttgggtttt	8	5	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38956215	G	G	38956215	1	3	48	0	1	0	0	0	0	0	0	0	8536	580	20	4		4	KRT28	17	38956215	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	48706	38956215	42238995	1101	52688											
KRTAP9-9	81870	broad.mit.edu	37	chr17	39388597	39388597	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccctttgacaatcccaaaTggactgtggaaaacaatgta	7	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39388597	A	A	39388597	1	1	48	0	1	0	0	0	0	0	0	0	8649	1479	51	5		5	KRTAP9-9	17	39388597	5'Flank	SNP	T	TCGA-17-Z015-01A-01W-0746-08	432382	39388597	41806613	1102	52689											
KRT36	8689	broad.mit.edu	37	chr17	39643457	39643457	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaagagctgcctattgggGaggaatcccctgaccccaga	13	11	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39643457	T	T	39643457	1	4	48	0	1	0	0	0	0	0	0	0	8544	1189	41	3		3	KRT36	17	39643457	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	254860	39643457	41551753	1103	52690											
KRT36	8689	broad.mit.edu	37	chr17	39644763	39644763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcaggagcatgacactcCtttcccctgaggtccagggc	12	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39644763	A	A	39644763	1	1	48	0	1	0	0	0	0	0	0	0	8544	696	24	2		2	KRT36	17	39644763	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1306	39644763	41550447	1104	52691											
KCNH4	23415	broad.mit.edu	37	chr17	40330185	40330185	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcggtgtaggacagtaCggctccgtcttctggcagac	13	11	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40330185	T	T	40330185	3	4	48	1	0	0	0	0	1	0	0	0	8104	536	19	4	2587	4	KCNH4	17	40330185	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	685422	40330185	40865025	1105	52692											
CNTNAP1	8506	broad.mit.edu	37	chr17	40839964	40839964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtcaacgtgtccatcgCgcagagcggccgaaagaagc	14	12	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40839964	T	T	40839964	3	4	48	1	0	0	0	0	1	0	0	0	3678	768	27	4	1301	4	CNTNAP1	17	40839964	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	509779	40839964	40355246	1106	52693											
MYL4	4635	broad.mit.edu	37	chr17	45299669	45299669	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttggaccttcacacttaAgggggtacttgggtattgcc	12	9	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45299669	T	T	45299669	1	4	48	0	1	0	0	0	0	0	0	0	10143	87	3	5		5	MYL4	17	45299669	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	4459705	45299669	35895541	1107	52694											
IGF2BP1	10642	broad.mit.edu	37	chr17	47122408	47122408	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggttatcatcactggacCgccagaggcccaattcaagg	10	11	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47122408	T	T	47122408	3	4	48	1	0	0	0	0	1	0	0	0	7643	652	23	4	1422	4	IGF2BP1	17	47122408	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1822739	47122408	34072802	1108	52695											
B4GALNT2	124872	broad.mit.edu	37	chr17	47243516	47243517	+	Missense_Mutation	DNP	CC	AA	AA													cctggccatatctcaggtcaCcaccaaatacgttctctggg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47243517	AA	AA	47243516	3	1	48	1	0	0	0	0	1	0	0	0	1272	507	18	3	1227	3	B4GALNT2	17	47243516	Missense_Mutation	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	121108	47243516	33951694	1109	52696											
ABCC3	8714	broad.mit.edu	37	chr17	48750509	48750509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggcaaggtgaggcctGccagaggctaagggggctaa	18	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48750509	T	T	48750509	1	4	48	0	1	0	0	0	0	0	0	0	54	1334	46	3		3	ABCC3	17	48750509	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1506993	48750509	32444701	1110	52697											
SPAG9	9043	broad.mit.edu	37	chr17	49048028	49048028	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacaaaacccaagtcataGcacacagtgcaaactgagca	9	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49048028	A	A	49048028	1	1	48	0	1	0	0	0	0	0	0	0	15101	986	34	4		4	SPAG9	17	49048028	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	297519	49048028	32147182	1111	52698											
SPAG9	9043	broad.mit.edu	37	chr17	49098727	49098727	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaacatcagaaagctcatcCtacaaataaaaataatttaa	2	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49098727	A	A	49098727	5	1	48	1	0	0	0	0	0	0	1	0	15101	695	24	2	3278	2	SPAG9	17	49098727	Splice_Site	SNP	C	TCGA-17-Z015-01A-01W-0746-08	50699	49098727	32096483	1112	52699											
TOM1L1	10040	broad.mit.edu	37	chr17	53038146	53038146	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaattgtgctgaaccatTgttcactaatgagagtcatt	7	7	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53038146	G	G	53038146	1	3	48	0	1	0	0	0	0	0	0	0	16475	1827	63	5		5	TOM1L1	17	53038146	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3939419	53038146	28157064	1113	52700											
MARCH10	162333	broad.mit.edu	37	chr17	60866033	60866033	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactttatgcttaactccaAtggtgaggagcatgaaataa	8	6	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60866033	G	G	60866033	1	3	48	0	1	0	0	0	0	0	0	0	9391	116	4	5		5	MARCH10	17	60866033	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	7827887	60866033	20329177	1114	52701											
SCN4A	6329	broad.mit.edu	37	chr17	62049695	62049695	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaacccctcccgcctctccCatcttgggcaggatatgcat	7	17	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62049695	T	T	62049695	1	4	48	0	1	0	0	0	0	0	0	0	14033	609	21	4		4	SCN4A	17	62049695	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1183662	62049695	19145515	1115	52702											
CACNG4	27092	broad.mit.edu	37	chr17	65028026	65028026	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagacacctccctccaaCtggcatttggcaacaggagc	10	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65028026	A	A	65028026	1	1	48	0	1	0	0	0	0	0	0	0	2585	580	20	3		3	CACNG4	17	65028026	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2978331	65028026	16167184	1116	52703											
ABCA6	23460	broad.mit.edu	37	chr17	67075414	67075414	+	Intron	DEL	A	-	-													aagttatgcttcactggaggAaaaaaaagactagtattaat							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67075414	-	-	67075414	6	5	48	0	1	1	0	1	0	0	0	0	36	261	9	0		0	ABCA6	17	67075414	Intron	DEL	A	TCGA-17-Z015-01A-01W-0746-08	2047388	67075414	14119796	1117	52704											
ABCA5	23461	broad.mit.edu	37	chr17	67270278	67270278	+	Intron	DEL	A	-	-													agcagaagcaacctgaaaagAaaaaaaaaacaacacagctc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67270278	-	-	67270278	6	5	48	0	1	1	0	1	0	0	0	0	35	261	9	0		0	ABCA5	17	67270278	Intron	DEL	A	TCGA-17-Z015-01A-01W-0746-08	194864	67270278	13924932	1118	52705											
MAP2K6	5608	broad.mit.edu	37	chr17	67450502	67450502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccttctaacattatcatGggtgcatacataaatgatga	7	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67450502	T	T	67450502	1	4	48	0	1	0	0	0	0	0	0	0	9333	1363	47	2		2	MAP2K6	17	67450502	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	180224	67450502	13744708	1119	52706											
CYGB	114757	broad.mit.edu	37	chr17	74533541	74533541	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagccgggcccacatagcCtgcaccgccttcctctccgc	9	19	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74533541	T	T	74533541	2	4	48	1	0	0	0	0	0	0	0	1	4172	680	24	4		4	CYGB	17	74533541	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7083039	74533541	6661669	1120	52707											
PGS1	9489	broad.mit.edu	37	chr17	76396790	76396790	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactcctacttcaccaaccGccaggaccgctacgtgttcc	7	17	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76396790	A	A	76396790	3	1	48	1	0	0	0	0	1	0	0	0	11903	1087	38	4	756	4	PGS1	17	76396790	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1863249	76396790	4798420	1121	52708											
NPLOC4	55666	broad.mit.edu	37	chr17	79580490	79580490	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgagggcccagcaaggctCgagggaaacaggaacaacaa	14	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79580490	A	A	79580490	2	1	48	1	0	0	0	0	0	0	0	1	10681	871	31	3		3	NPLOC4	17	79580490	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3183700	79580490	1614720	1122	52709											
ENOSF1	55556	broad.mit.edu	37	chr18	691265	691265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatctatgcaggataccagCatcctgggatcctggcaacg	10	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	691265	A	A	691265	3	1	48	1	0	0	0	0	1	0	0	0	5167	710	25	3	940	3	ENOSF1	18	691265	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08		691265	77385983	1123	52710											
DLGAP1	9229	broad.mit.edu	37	chr18	3580689	3580689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctgaggacgacggtggcCacaatgatcacagtcaacca	10	14	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3580689	A	A	3580689	1	1	48	0	1	0	0	0	0	0	0	0	4599	609	21	2		2	DLGAP1	18	3580689	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2889424	3580689	74496559	1124	52711											
KIAA0802	23255	broad.mit.edu	37	chr18	8819248	8819248	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagggagttcaggaaccgCctccctgaggtcagccaggt	15	11	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8819248	T	T	8819248	2	4	48	1	0	0	0	0	0	0	0	1	8264	726	26	4		4	KIAA0802	18	8819248	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5238559	8819248	69258000	1125	52712											
FAM38B	63895	broad.mit.edu	37	chr18	10675214	10675214	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcattcttaccagataaaAgttgctttataggttttgag	7	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10675214	G	G	10675214	3	3	48	1	0	0	0	0	1	0	0	0	5606	72	3	5	456	5	FAM38B	18	10675214	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1855966	10675214	67402034	1126	52713											
ANKRD30B	374860	broad.mit.edu	37	chr18	14799107	14799107	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttttcttttagagtctccTgataatgatggtcttctgaa	7	8	4	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14799107	A	A	14799107	2	1	48	1	0	0	0	0	0	0	0	1	659	1567	55	5		5	ANKRD30B	18	14799107	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	4123893	14799107	63278141	1127	52714											
ANKRD30B	374860	broad.mit.edu	37	chr18	14852041	14852041	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagcccaaaaattaatctCaattatgcaggagatgatct	6	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14852041	A	A	14852041	2	1	48	1	0	0	0	0	0	0	0	1	659	813	29	3		3	ANKRD30B	18	14852041	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	52934	14852041	63225207	1128	52715											
C18orf34	374864	broad.mit.edu	37	chr18	30834600	30834600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagttaccaataggacaagCttctgggaatagctaatgtc	9	7	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30834600	A	A	30834600	1	1	48	0	1	0	0	0	0	0	0	0	1920	812	28	3		3	C18orf34	18	30834600	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	15982559	30834600	47242648	1129	52716											
ASXL3	80816	broad.mit.edu	37	chr18	31320076	31320076	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttccatctgctaaattacAggacaagcaatatatctcat	5	10	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31320076	T	T	31320076	3	4	48	1	0	0	0	0	1	0	0	0	1072	188	7	5	2750	5	ASXL3	18	31320076	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	485476	31320076	46757172	1130	52717											
NOL4	8715	broad.mit.edu	37	chr18	31463018	31463018	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcacactctggggactgtTgtggggtggagggagggggg	21	5	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31463018	G	G	31463018	1	3	48	0	1	0	0	0	0	0	0	0	10619	1827	63	5		5	NOL4	18	31463018	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	142942	31463018	46614230	1131	52718											
DTNA	1837	broad.mit.edu	37	chr18	32335960	32335960	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgattgaagatagtgggaAaagaggaaataccatggcag	13	3	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32335960	C	C	32335960	3	2	48	1	0	0	0	0	1	0	0	0	4828	14	1	5	22	5	DTNA	18	32335960	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	872942	32335960	45741288	1132	52719											
FHOD3	80206	broad.mit.edu	37	chr18	34179946	34179946	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgggggtggggggcagtgGagttggagagagacagatga	24	2	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34179946	A	A	34179946	1	1	48	0	1	0	0	0	0	0	0	0	5940	1189	41	4		4	FHOD3	18	34179946	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1843986	34179946	43897302	1133	52720											
FHOD3	80206	broad.mit.edu	37	chr18	34298194	34298194	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgaagacagagtctgattAcatctgggaccagctcatgg	12	10	3	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34298194	T	T	34298194	3	4	48	1	0	0	0	0	1	0	0	0	5940	391	14	5	2470	5	FHOD3	18	34298194	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	118248	34298194	43779054	1134	52721											
RIT2	6014	broad.mit.edu	37	chr18	40613017	40613017	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggctatatgcctccctctCtgggaaataatgcttgatgt	10	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40613017	A	A	40613017	1	1	48	0	1	0	0	0	0	0	0	0	13498	928	32	3		3	RIT2	18	40613017	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6314823	40613017	37464231	1135	52722											
SLC14A2	8170	broad.mit.edu	37	chr18	42946265	42946265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccaggggcttccttggCctccttccacaactgctctc	7	18	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42946265	A	A	42946265	1	1	48	0	1	0	0	0	0	0	0	0	14510	754	26	3		3	SLC14A2	18	42946265	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2333248	42946265	35130983	1136	52723											
KIAA1632	57724	broad.mit.edu	37	chr18	43481291	43481291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaaattattaccctagaCaggccttgcatgacatgcta	6	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43481291	A	A	43481291	1	1	48	0	1	0	0	0	0	0	0	0	8319	493	17	3		3	KIAA1632	18	43481291	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	535026	43481291	34595957	1137	52724											
WDR7	23335	broad.mit.edu	37	chr18	54362041	54362041	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattaatttaatatcttaaAtaccaactactgaataacat	1	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54362041	C	C	54362041	1	2	48	0	1	0	0	0	0	0	0	0	17447	116	4	5		5	WDR7	18	54362041	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	10880750	54362041	23715207	1138	52725											
ONECUT2	9480	broad.mit.edu	37	chr18	55143662	55143662	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctccttcttctctttccCttcaagcgtgcaaacgcaaa	4	16	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55143662	T	T	55143662	1	4	48	0	1	0	0	0	0	0	0	0	10963	696	24	4		4	ONECUT2	18	55143662	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	781621	55143662	22933586	1139	52726											
ZNF532	55205	broad.mit.edu	37	chr18	56651651	56651651	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atactcacatgcggacacacGgcatggccttcatcaaatcc	7	14	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56651651	A	A	56651651	3	1	48	1	0	0	0	0	1	0	0	0	18099	1116	39	4	3889	4	ZNF532	18	56651651	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1507989	56651651	21425597	1140	52727											
SERPINB11	89778	broad.mit.edu	37	chr18	61388402	61388402	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcctctgcctttcaggaCagtgtgtttatggagaacaa	11	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61388402	G	G	61388402	1	3	48	0	1	0	0	0	0	0	0	0	14211	493	17	4		4	SERPINB11	18	61388402	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4736751	61388402	16688846	1141	52728											
CD226	10666	broad.mit.edu	37	chr18	67590423	67590424	+	Intron	INS	-	AAGG	AAGG													gaaaaagagagaaagaaagaINSaaggaaggaaggaaggaagg					rs148340090	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAGG	67590424	AAGG	AAGG	67590423	6	5	48	0	1	1	1	0	0	0	0	0	3016	261	9	0		0	CD226	18	67590423	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	6202021	67590423	10486825	1142	52729											
PQLC1	80148	broad.mit.edu	37	chr18	77703499	77703499	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcaggagggaggtccacCcatgccacttctcccagtcc	11	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77703499	G	G	77703499	1	3	48	0	1	0	0	0	0	0	0	0	12519	638	22	4		4	PQLC1	18	77703499	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	10113076	77703499	373749	1143	52730											
SEMA6B	10501	broad.mit.edu	37	chr19	4556051	4556051	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaaccgcacacaaagagCgtggactcgtcccgaaggag	13	11	0	1	rs73527729	byFrequency;by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4556051	A	A	4556051	2	1	48	1	0	0	0	0	0	0	0	1	14153	755	27	3		3	SEMA6B	19	4556051	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08		4556051	54572932	1144	52731											
RANBP3	8498	broad.mit.edu	37	chr19	5932408	5932408	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgctgtcccgggtgcgacttCgggaacgctctaccctgccg	13	15	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5932408	G	G	5932408	1	3	48	0	1	0	0	0	0	0	0	0	13137	899	31	4		4	RANBP3	19	5932408	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1376357	5932408	53196575	1145	52732											
EMR1	2015	broad.mit.edu	37	chr19	6921811	6921811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctttggctgtgtgatcCtggaagcttctgagacatat	10	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6921811	A	A	6921811	3	1	48	1	0	0	0	0	1	0	0	0	5146	680	24	2	1762	2	EMR1	19	6921811	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	989403	6921811	52207172	1146	52733											
MUC16	94025	broad.mit.edu	37	chr19	9005308	9005308	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaagtcagggctaccctGgtggaatgaaaggagtttca	12	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9005308	A	A	9005308	1	1	48	0	1	0	0	0	0	0	0	0	10067	1363	47	4		4	MUC16	19	9005308	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2083497	9005308	50123675	1147	52734											
MUC16	94025	broad.mit.edu	37	chr19	9038484	9038484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaggggaggggaagatgGtagatccagaaatggaaata	17	2	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9038484	T	T	9038484	1	4	48	0	1	0	0	0	0	0	0	0	10067	1276	44	3		3	MUC16	19	9038484	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	33176	9038484	50090499	1148	52735											
MUC16	94025	broad.mit.edu	37	chr19	9074641	9074641	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggagatgtggctttggAtggctttgtatggcctggga	16	5	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9074641	G	G	9074641	3	3	48	1	0	0	0	0	1	0	0	0	10067	333	12	5	31046	5	MUC16	19	9074641	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	36157	9074641	50054342	1149	52736											
ZNF699	374879	broad.mit.edu	37	chr19	9406725	9406725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaactaaaggccttcccaCattccttacattcatagggt	6	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9406725	A	A	9406725	3	1	48	1	0	0	0	0	1	0	0	0	18228	478	17	3	577	3	ZNF699	19	9406725	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	332084	9406725	49722258	1150	52737											
ZNF699	374879	broad.mit.edu	37	chr19	9408689	9408689	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacaagcagaaaggcatatCacgagggaaaataatgaaga	11	6	1	3	rs144916883	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9408689	A	A	9408689	1	1	48	0	1	0	0	0	0	0	0	0	18228	841	29	3		3	ZNF699	19	9408689	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1964	9408689	49720294	1151	52738											
PDE4A	5141	broad.mit.edu	37	chr19	10565513	10565513	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctttaccttagttcaaaagGatgttgaaccgtgagctcac	8	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10565513	C	C	10565513	3	2	48	1	0	0	0	0	1	0	0	0	11733	1165	41	4	1275	4	PDE4A	19	10565513	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1156824	10565513	48563470	1152	52739											
MAN2B1	4125	broad.mit.edu	37	chr19	12760975	12760975	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccgctgtcctgggtacAggcgaaccacctgggaacac	14	13	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12760975	T	T	12760975	3	4	48	1	0	0	0	0	1	0	0	0	9308	188	7	5	959	5	MAN2B1	19	12760975	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2195462	12760975	46368008	1153	52740											
ZSWIM4	65249	broad.mit.edu	37	chr19	13928235	13928235	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggccacgccccctggcccAgtacccctataaggtaactc	8	17	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13928235	G	G	13928235	1	3	48	0	1	0	0	0	0	0	0	0	18372	203	7	5		5	ZSWIM4	19	13928235	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1167260	13928235	45200748	1154	52741											
PGLYRP2	114770	broad.mit.edu	37	chr19	15586230	15586230	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagctgtcccacccacccccGaccagatcccttattgcccc	5	22	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15586230	T	T	15586230	1	4	48	0	1	0	0	0	0	0	0	0	11889	1073	37	3		3	PGLYRP2	19	15586230	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1657995	15586230	43542753	1155	52742											
CYP4F11	57834	broad.mit.edu	37	chr19	16025517	16025517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggacaaggcccccctgCctgagggacccctcttgcta	11	16	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16025517	A	A	16025517	1	1	48	0	1	0	0	0	0	0	0	0	4219	754	26	3		3	CYP4F11	19	16025517	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	439287	16025517	43103466	1156	52743											
CYP4F11	57834	broad.mit.edu	37	chr19	16038331	16038331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagtggccatggagaggGgtgagagaaggactttgggt	18	5	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16038331	T	T	16038331	1	4	48	0	1	0	0	0	0	0	0	0	4219	1247	43	2		2	CYP4F11	19	16038331	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	12814	16038331	43090652	1157	52744											
C19orf44	84167	broad.mit.edu	37	chr19	16611814	16611814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagagaaccctgtgctcGggagtggacccaggcttgcc	14	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16611814	T	T	16611814	3	4	48	1	0	0	0	0	1	0	0	0	1946	1116	39	1	213	1	C19orf44	19	16611814	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	573483	16611814	42517169	1158	52745											
NWD1	284434	broad.mit.edu	37	chr19	16902383	16902383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctgtgccgtctcagtcCagaagcaaggaaagcttgtt	10	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16902383	A	A	16902383	3	1	48	1	0	0	0	0	1	0	0	0	10876	595	21	2	2796	2	NWD1	19	16902383	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	290569	16902383	42226600	1159	52746											
SIN3B	23309	broad.mit.edu	37	chr19	16977262	16977262	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggagcagtatgagaaggcGtacctcaagtcccttgacca	12	11	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16977262	A	A	16977262	2	1	48	1	0	0	0	0	0	0	0	1	14439	1132	40	4		4	SIN3B	19	16977262	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	74879	16977262	42151721	1160	52747											
USHBP1	83878	broad.mit.edu	37	chr19	17370140	17370140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctgtggcctcagcctccCgctggcctagctgcatgctg	12	15	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17370140	T	T	17370140	3	4	48	1	0	0	0	0	1	0	0	0	17163	652	23	4	1135	4	USHBP1	19	17370140	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	392878	17370140	41758843	1161	52748											
ZNF253	56242	broad.mit.edu	37	chr19	20003006	20003006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctacaactgtgaagaatGtggcaaatcctttaagcact	7	10	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20003006	T	T	20003006	3	4	48	1	0	0	0	0	1	0	0	0	17923	1377	48	3	964	3	ZNF253	19	20003006	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2632866	20003006	39125977	1162	52749											
ZNF90	7643	broad.mit.edu	37	chr19	20228727	20228727	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggttgtgaaagtgtggatGagggtaaagtacacaaaaga	14	2	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20228727	A	A	20228727	3	1	48	1	0	0	0	0	1	0	0	0	18328	1291	45	4	378	4	ZNF90	19	20228727	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	225721	20228727	38900256	1163	52750											
ZNF430	80264	broad.mit.edu	37	chr19	21240404	21240404	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggagagaaaccctacaaAtgtgaacaatgtggcaaagc	10	8	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21240404	T	T	21240404	3	4	48	1	0	0	0	0	1	0	0	0	18031	98	4	5	1308	5	ZNF430	19	21240404	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1011677	21240404	37888579	1164	52751											
ZNF429	353088	broad.mit.edu	37	chr19	21720466	21720466	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catactggagagaaaccttaCaaatgtgaagaatgtggcaa	10	6	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21720466	A	A	21720466	4	1	48	1	0	0	0	0	0	1	0	0	18029	489	17	3	1625	3	ZNF429	19	21720466	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	480062	21720466	37408517	1165	52752											
ZNF676	163223	broad.mit.edu	37	chr19	22375740	22375740	+	Intron	DEL	C	-	-													ctacttttggaacacagcttCccaaatgactttaaggactg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22375740	-	-	22375740	6	5	48	0	1	1	0	1	0	0	0	0	18210	870	30	0		0	ZNF676	19	22375740	Intron	DEL	C	TCGA-17-Z015-01A-01W-0746-08	655274	22375740	36753243	1166	52753											
C19orf2	8725	broad.mit.edu	37	chr19	30499946	30499946	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattgcaaatggagaagatAcgacatcttctgaagaggaa	11	5	2	5			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30499946	T	T	30499946	3	4	48	1	0	0	0	0	1	0	0	0	1930	391	14	5	751	5	C19orf2	19	30499946	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	8124206	30499946	28629037	1167	52754											
ZNF536	9745	broad.mit.edu	37	chr19	31047973	31047973	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtcattattccattaaacGattaggggatgtggccctgc	10	8	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31047973	T	T	31047973	1	4	48	0	1	0	0	0	0	0	0	0	18101	1073	37	3		3	ZNF536	19	31047973	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	548027	31047973	28081010	1168	52755											
TSHZ3	57616	broad.mit.edu	37	chr19	31768669	31768669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggctcccatccttgcacCcatcccgcggggggctgggg	17	15	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768669	A	A	31768669	3	1	48	1	0	0	0	0	1	0	0	0	16750	623	22	2	1219	2	TSHZ3	19	31768669	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	720696	31768669	27360314	1169	52756											
DPY19L3	147991	broad.mit.edu	37	chr19	32970484	32970484	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccatccatgtggacacatCaagttagaccctcaagccca	6	15	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32970484	T	T	32970484	1	4	48	0	1	0	0	0	0	0	0	0	4782	841	29	4		4	DPY19L3	19	32970484	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1201815	32970484	26158499	1170	52757											
ZNF792	126375	broad.mit.edu	37	chr19	35449248	35449248	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcactgcactggtaaggcCgttcaccagtgtgaagtctc	10	11	3	1	rs142139829		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35449248	G	G	35449248	3	3	48	1	0	0	0	0	1	0	0	0	18293	652	23	4	391	4	ZNF792	19	35449248	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2478764	35449248	23679735	1171	52758											
GRAMD1A	57655	broad.mit.edu	37	chr19	35501114	35501114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacggtgagcccgcagcgGggcagggtacaggggcgggg	21	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35501114	T	T	35501114	1	4	48	0	1	0	0	0	0	0	0	0	6813	1247	43	2		2	GRAMD1A	19	35501114	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	51866	35501114	23627869	1172	52759											
KRTDAP	388533	broad.mit.edu	37	chr19	35979475	35979475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggagaaggtgaaggaacCgtggcagctttgcaagctct	14	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35979475	A	A	35979475	1	1	48	0	1	0	0	0	0	0	0	0	8652	667	23	1		1	KRTDAP	19	35979475	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	478361	35979475	23149508	1173	52760											
ATP4A	495	broad.mit.edu	37	chr19	36045890	36045890	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcaggggcacgctgacggtGatgtagatgaggtagggtgt	20	5	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36045890	T	T	36045890	2	4	48	1	0	0	0	0	0	0	0	1	1149	1280	45	3		3	ATP4A	19	36045890	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	66415	36045890	23083093	1174	52761											
ZNF790	388536	broad.mit.edu	37	chr19	37314167	37314167	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaacaatggcctccttgtgCgtgttcagccctcactcacc	7	16	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37314167	T	T	37314167	1	4	48	0	1	0	0	0	0	0	0	0	18291	783	27	4		4	ZNF790	19	37314167	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1268277	37314167	21814816	1175	52762											
SIPA1L3	23094	broad.mit.edu	37	chr19	38673055	38673055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatttgtgtctgtcttgtGcaaatgaacttttttgattc	7	5	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38673055	T	T	38673055	1	4	48	0	1	0	0	0	0	0	0	0	14444	1334	46	3		3	SIPA1L3	19	38673055	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1358888	38673055	20455928	1176	52763											
PAPL	390928	broad.mit.edu	37	chr19	39589522	39589522	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccatctcctcccctccaCcagtcggggaaggatggggt	11	17	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39589522	G	G	39589522	1	3	48	0	1	0	0	0	0	0	0	0	11521	522	18	4		4	PAPL	19	39589522	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	916467	39589522	19539461	1177	52764											
CYP2A7	1549	broad.mit.edu	37	chr19	41532949	41532949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtcagggagaaggctggGgacacggaggccatcgagtc	18	8	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41532949	T	T	41532949	1	4	48	0	1	0	0	0	0	0	0	0	4196	1247	43	2		2	CYP2A7	19	41532949	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1943427	41532949	17596034	1178	52765											
CCDC97	90324	broad.mit.edu	37	chr19	41822539	41822539	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccatcctggcccagctGtaccacgagaagccactggt	12	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41822539	T	T	41822539	2	4	48	1	0	0	0	0	0	0	0	1	2903	1364	48	3		3	CCDC97	19	41822539	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	289590	41822539	17306444	1179	52766											
PSG6	5675	broad.mit.edu	37	chr19	43514502	43514502	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtcacctttgcacctttTcatggttgcatctttttctc	5	12	4	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43514502	C	C	43514502	1	2	48	0	1	0	0	0	0	0	0	0	12765	1798	62	5		5	PSG6	19	43514502	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1691963	43514502	15614481	1180	52767											
PSG5	5673	broad.mit.edu	37	chr19	43674241	43674241	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatacagaaatgacttcaCggctgctatattggattaag	9	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43674241	T	T	43674241	1	4	48	0	1	0	0	0	0	0	0	0	12764	551	19	4		4	PSG5	19	43674241	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	159739	43674241	15454742	1181	52768											
PSG5	5673	broad.mit.edu	37	chr19	43679647	43679647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagagaatgaagccacaGgtgatgtcatccaagggaag	13	7	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43679647	T	T	43679647	1	4	48	0	1	0	0	0	0	0	0	0	12764	1015	35	2		2	PSG5	19	43679647	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	5406	43679647	15449336	1182	52769											
PVRL2	5819	broad.mit.edu	37	chr19	45377033	45377033	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacacaacagcctggaCtgatttgccccagacagttt	8	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45377033	T	T	45377033	1	4	48	0	1	0	0	0	0	0	0	0	12948	580	20	4		4	PVRL2	19	45377033	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1697386	45377033	13751950	1183	52770											
IGFL1	374918	broad.mit.edu	37	chr19	46733027	46733027	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactccactgcaaccacccaGagccatggctccccgaggct	8	19	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46733027	T	T	46733027	1	4	48	0	1	0	0	0	0	0	0	0	7656	957	33	3		3	IGFL1	19	46733027	5'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1355994	46733027	12395956	1184	52771											
CGB	1082	broad.mit.edu	37	chr19	49551698	49551698	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggccttcccatcccacGtggtacaccacccacaaaga	6	18	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49551698	A	A	49551698	1	1	48	0	1	0	0	0	0	0	0	0	3326	1160	40	4		4	CGB	19	49551698	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2818671	49551698	9577285	1185	52772											
CCDC155	147872	broad.mit.edu	37	chr19	49901271	49901271	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgctgagcagcctggAggacctggagctcagcaacc	13	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49901271	G	G	49901271	3	3	48	1	0	0	0	0	1	0	0	0	2815	304	11	5	522	5	CCDC155	19	49901271	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	349573	49901271	9227712	1186	52773											
C19orf75	284369	broad.mit.edu	37	chr19	51769231	51769231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagacaggacccctccCctcaaggagcttagggtcta	10	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51769231	A	A	51769231	1	1	48	0	1	0	0	0	0	0	0	0	1969	638	22	2		2	C19orf75	19	51769231	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1867960	51769231	7359752	1187	52774											
NKG7	4818	broad.mit.edu	37	chr19	51875431	51875431	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacctgcagcaaaggctgcGgtggttgagacaagcgggcc	15	10	0	1	rs144240268		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51875431	A	A	51875431	2	1	48	1	0	0	0	0	0	0	0	1	10538	1103	39	4		4	NKG7	19	51875431	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	106200	51875431	7253552	1188	52775											
FPR1	2357	broad.mit.edu	37	chr19	52250185	52250185	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatatccaggaagagataGccagcagatacagcaggtgt	12	7	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52250185	T	T	52250185	2	4	48	1	0	0	0	0	0	0	0	1	6098	958	34	3		3	FPR1	19	52250185	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	374754	52250185	6878798	1189	52776											
OSCAR	126014	broad.mit.edu	37	chr19	54604075	54604075	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagctggaggatcagcacCagggccatggtgggcagata	16	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54604075	A	A	54604075	2	1	48	1	0	0	0	0	0	0	0	1	11379	581	21	2		2	OSCAR	19	54604075	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2353890	54604075	4524908	1190	52777											
LILRA6	79168	broad.mit.edu	37	chr19	54772800	54772800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgaaaagtcatgcagaGgagcataagaatctagcaga	10	6	3	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54772800	T	T	54772800	1	4	48	0	1	0	0	0	0	0	0	0	8861	1015	35	2		2	LILRA6	19	54772800	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	168725	54772800	4356183	1191	52778											
LILRB4	11006	broad.mit.edu	37	chr19	55176016	55176016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagctctgggcagggatGgagggagaggggctcagcca	21	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55176016	T	T	55176016	1	4	48	0	1	0	0	0	0	0	0	0	8865	1363	47	2		2	LILRB4	19	55176016	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	403216	55176016	3952967	1192	52779											
ZNF549	256051	broad.mit.edu	37	chr19	58046558	58046558	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtacttctcccaggaggAgtggggcctccttgatgaag	14	9	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58046558	T	T	58046558	3	4	48	1	0	0	0	0	1	0	0	0	18108	304	11	5	86	5	ZNF549	19	58046558	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2870542	58046558	1082425	1193	52780											
SIRPD	128646	broad.mit.edu	37	chr20	1532360	1532360	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacaaacacctgagtgcccCgacctgattggtactccttg	8	13	0	2	rs141059543		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1532360	G	G	1532360	3	3	48	1	0	0	0	0	1	0	0	0	14448	652	23	4	207	4	SIRPD	20	1532360	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08		1532360	61493160	1194	52781											
SIRPA	140885	broad.mit.edu	37	chr20	1902071	1902071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccccgtggtatcgggccCtgcggcgagggccacacctc	14	17	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1902071	A	A	1902071	3	1	48	1	0	0	0	0	1	0	0	0	14445	681	24	2	477	2	SIRPA	20	1902071	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	369711	1902071	61123449	1195	52782											
SIRPA	140885	broad.mit.edu	37	chr20	1918276	1918276	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtcccacagggagccgCcgtgatgagcacagccaacc	11	15	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1918276	A	A	1918276	1	1	48	0	1	0	0	0	0	0	0	0	14445	754	26	3		3	SIRPA	20	1918276	3'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	16205	1918276	61107244	1196	52783											
CDC25B	994	broad.mit.edu	37	chr20	3782099	3782099	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttcgcccaaaagaagagaGctctgagcccttgtggcagg	14	10	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3782099	A	A	3782099	1	1	48	0	1	0	0	0	0	0	0	0	3093	986	34	4		4	CDC25B	20	3782099	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1863823	3782099	59243421	1197	52784											
PLCB1	23236	broad.mit.edu	37	chr20	8628660	8628660	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaagatctgaatccatGccatggctctgttttgtttc	7	11	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8628660	A	A	8628660	1	1	48	0	1	0	0	0	0	0	0	0	12122	1334	46	4		4	PLCB1	20	8628660	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4846561	8628660	54396860	1198	52785											
PLCB1	23236	broad.mit.edu	37	chr20	8637933	8637933	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataacatcttttcagaattgTaagagtacacattttaagcc	5	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8637933	C	C	8637933	5	2	48	1	0	0	0	0	0	0	1	0	12122	1652	57	5	727	5	PLCB1	20	8637933	Splice_Site	SNP	T	TCGA-17-Z015-01A-01W-0746-08	9273	8637933	54387587	1199	52786											
C20orf103	24141	broad.mit.edu	37	chr20	9510208	9510208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagaaatctttttacctcCatttccctttttgttttgta	4	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9510208	A	A	9510208	1	1	48	0	1	0	0	0	0	0	0	0	2097	609	21	2		2	C20orf103	20	9510208	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	872275	9510208	53515312	1200	52787											
PAK7	57144	broad.mit.edu	37	chr20	9543476	9543476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagagttcatagtcactgCggctttatcctggagaagaa	11	7	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9543476	A	A	9543476	1	1	48	0	1	0	0	0	0	0	0	0	11499	783	27	3		3	PAK7	20	9543476	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	33268	9543476	53482044	1201	52788											
C20orf72	92667	broad.mit.edu	37	chr20	17950904	17950904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgataccaagtgtgacCcgagtccttcagcagaccat	9	11	1	3	rs145801798		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17950904	A	A	17950904	2	1	48	1	0	0	0	0	0	0	0	1	2140	610	22	2		2	C20orf72	20	17950904	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	8407428	17950904	45074616	1202	52789											
SEC23B	10483	broad.mit.edu	37	chr20	18492938	18492938	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatcaggtatgtgaattAtttttaaaaaatgttatatg	7	1	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18492938	G	G	18492938	1	3	48	0	1	0	0	0	0	0	0	0	14105	464	16	5		5	SEC23B	20	18492938	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	542034	18492938	44532582	1203	52790											
C20orf26	26074	broad.mit.edu	37	chr20	20232504	20232504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacactctgggtaaagagCatccctctgcctggacagct	9	14	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20232504	A	A	20232504	1	1	48	0	1	0	0	0	0	0	0	0	2128	725	25	3		3	C20orf26	20	20232504	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1739566	20232504	42793016	1204	52791											
PLK1S1	55857	broad.mit.edu	37	chr20	21142700	21142700	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcacaccgacagacagcCcagagcagtaatgtgacaga	9	12	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21142700	T	T	21142700	2	4	48	1	0	0	0	0	0	0	0	1	12190	610	22	4		4	PLK1S1	20	21142700	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	910196	21142700	41882820	1205	52792											
CST9	128822	broad.mit.edu	37	chr20	23584161	23584161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgggctcacttccctttgtCcctcggaatggctttgtcag	11	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23584161	A	A	23584161	3	1	48	1	0	0	0	0	1	0	0	0	4013	855	30	3	17	3	CST9	20	23584161	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2441461	23584161	39441359	1206	52793											
CST2	1470	broad.mit.edu	37	chr20	23804646	23804646	+	3'UTR	DEL	G	-	-													ggtggtcagtgtgactccctGgcacagatccctaggcttct							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23804646	-	-	23804646	6	5	48	0	1	1	0	1	0	0	0	0	4006	1363	47	0		0	CST2	20	23804646	3'UTR	DEL	G	TCGA-17-Z015-01A-01W-0746-08	220485	23804646	39220874	1207	52794											
DEFB115	245929	broad.mit.edu	37	chr20	29845664	29845664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaaggagagcccacagGgatggctgagatctgatgaa	15	7	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29845664	T	T	29845664	1	4	48	0	1	0	0	0	0	0	0	0	4443	1247	43	2		2	DEFB115	20	29845664	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6041018	29845664	33179856	1208	52795											
DEFB119	245932	broad.mit.edu	37	chr20	29978412	29978412	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgaattagaacaggagGggatttatatgaggtcatcc	13	5	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29978412	A	A	29978412	1	1	48	0	1	0	0	0	0	0	0	0	4446	1247	43	4		4	DEFB119	20	29978412	5'Flank	SNP	G	TCGA-17-Z015-01A-01W-0746-08	132748	29978412	33047108	1209	52796											
XKR7	343702	broad.mit.edu	37	chr20	30584859	30584859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccaatgggcccatgctgGgtccccaggcacctggttgc	12	16	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30584859	T	T	30584859	3	4	48	1	0	0	0	0	1	0	0	0	17563	1232	43	2	1349	2	XKR7	20	30584859	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	606447	30584859	32440661	1210	52797											
C20orf185	359710	broad.mit.edu	37	chr20	31660375	31660375	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtgtaggaggatgagtagGagtttgccaataagaagctg	17	3	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31660375	T	T	31660375	1	4	48	0	1	0	0	0	0	0	0	0	2119	1189	41	3		3	C20orf185	20	31660375	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1075516	31660375	31365145	1211	52798											
NCOA6	23054	broad.mit.edu	37	chr20	33329685	33329685	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaaggctgcccatccttttTggactgatcttcagggacaa	10	11	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33329685	C	C	33329685	3	2	48	1	0	0	0	0	1	0	0	0	10328	1821	63	5	1836	5	NCOA6	20	33329685	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1669310	33329685	29695835	1212	52799											
GGT7	2686	broad.mit.edu	37	chr20	33444618	33444618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggtcacctctgtacaCgccacacacaggcttctcca	9	15	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33444618	A	A	33444618	3	1	48	1	0	0	0	0	1	0	0	0	6428	536	19	3	927	3	GGT7	20	33444618	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	114933	33444618	29580902	1213	52800											
GDF5	8200	broad.mit.edu	37	chr20	34025047	34025047	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcagatgcccctccctctGagccgtgcccctgccacccc	8	21	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34025047	T	T	34025047	1	4	48	0	1	0	0	0	0	0	0	0	6380	1305	45	3		3	GDF5	20	34025047	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	580429	34025047	29000473	1214	52801											
EPB41L1	2036	broad.mit.edu	37	chr20	34778240	34778240	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attggctttaagctcccaaaCcaccggtcagccaagagact	8	13	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34778240	T	T	34778240	2	4	48	1	0	0	0	0	0	0	0	1	5194	506	18	4		4	EPB41L1	20	34778240	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	753193	34778240	28247280	1215	52802											
RALGAPB	57148	broad.mit.edu	37	chr20	37188750	37188750	+	Intron	DEL	T	-	-													aacactgatttatgagaaagTtttttttttttgttattgag							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37188750	-	-	37188750	6	5	48	0	1	1	0	1	0	0	0	0	13123	1740	60	0		0	RALGAPB	20	37188750	Intron	DEL	T	TCGA-17-Z015-01A-01W-0746-08	2410510	37188750	25836770	1216	52803											
CHD6	84181	broad.mit.edu	37	chr20	40081214	40081214	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcggagcatacggtgactgaGacggattctgggcagaaggc	17	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40081214	A	A	40081214	1	1	48	0	1	0	0	0	0	0	0	0	3360	957	33	4		4	CHD6	20	40081214	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2892464	40081214	22944306	1217	52804											
CHD6	84181	broad.mit.edu	37	chr20	40151030	40151031	+	Intron	DEL	CG	-	-													aaaacccattttgtaaccaaCgtagaaaagatgcgcatggt					rs140116884		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40151031	-	-	40151030	6	5	48	0	1	1	0	1	0	0	0	0	3360	551	19	0		0	CHD6	20	40151030	Intron	DEL	CG	TCGA-17-Z015-01A-01W-0746-08	69816	40151030	22874490	1218	52805											
PTPRT	11122	broad.mit.edu	37	chr20	40811964	40811964	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggaacctaacagcaaggAagaccaacaccatggacaga	10	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40811964	T	T	40811964	1	4	48	0	1	0	0	0	0	0	0	0	12920	261	9	5		5	PTPRT	20	40811964	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	660934	40811964	22213556	1219	52806											
PTPRT	11122	broad.mit.edu	37	chr20	41306427	41306427	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaattcggaattatctgtcAcaggaaggcaagaggaaagc	11	6	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41306427	T	T	41306427	1	4	48	0	1	0	0	0	0	0	0	0	12920	174	6	5		5	PTPRT	20	41306427	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	494463	41306427	21719093	1220	52807											
PABPC1L	80336	broad.mit.edu	37	chr20	43547710	43547710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtccccaagggagcgGggggatcactgtttttcctc	15	10	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43547710	T	T	43547710	1	4	48	0	1	0	0	0	0	0	0	0	11458	1247	43	2		2	PABPC1L	20	43547710	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2241283	43547710	19477810	1221	52808											
SLC12A5	57468	broad.mit.edu	37	chr20	44672666	44672666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggaggtgctgggacctGtgtgaggggcctgtgggagg	21	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44672666	T	T	44672666	1	4	48	0	1	0	0	0	0	0	0	0	14499	1392	48	3		3	SLC12A5	20	44672666	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1124956	44672666	18352854	1222	52809											
SLC12A5	57468	broad.mit.edu	37	chr20	44684782	44684782	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcaccaacctatgtcacTccctagatccagagtatcac	6	15	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44684782	C	C	44684782	1	2	48	0	1	0	0	0	0	0	0	0	14499	1566	54	5		5	SLC12A5	20	44684782	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	12116	44684782	18340738	1223	52810											
CD40	958	broad.mit.edu	37	chr20	44757607	44757607	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctccagtgcaggagacTttacatggatgccaaccggt	12	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44757607	G	G	44757607	2	3	48	1	0	0	0	0	0	0	0	1	3045	1596	56	5		5	CD40	20	44757607	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	72825	44757607	18267913	1224	52811											
CDH22	64405	broad.mit.edu	37	chr20	44879714	44879714	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggctccgtgcccgtgtactCctctaccacgaagaactggt	11	14	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44879714	G	G	44879714	3	3	48	1	0	0	0	0	1	0	0	0	3137	864	30	4	2310	4	CDH22	20	44879714	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	122107	44879714	18145806	1225	52812											
CDH22	64405	broad.mit.edu	37	chr20	44891152	44891152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccttgctccctttcccCtttaagataaagcccagact	4	16	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44891152	A	A	44891152	1	1	48	0	1	0	0	0	0	0	0	0	3137	696	24	2		2	CDH22	20	44891152	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	11438	44891152	18134368	1226	52813											
CDH22	64405	broad.mit.edu	37	chr20	44910757	44910757	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgatactgatgagtctgatGatcatgcttcatttattcat	7	8	4	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44910757	T	T	44910757	1	4	48	0	1	0	0	0	0	0	0	0	3137	1305	45	3		3	CDH22	20	44910757	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	19605	44910757	18114763	1227	52814											
ATP9A	10079	broad.mit.edu	37	chr20	50287569	50287570	+	Intron	INS	-	AG	AG													cacgcatctctcatatgtccINSagagagagcccaagaatttc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	50287570	AG	AG	50287569	6	5	48	0	1	1	1	0	0	0	0	0	1202	609	21	0		0	ATP9A	20	50287569	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	5376812	50287569	12737951	1228	52815											
TSHZ2	128553	broad.mit.edu	37	chr20	51722784	51722784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtctccctgatcctcccaCgctccagcctcttataacca	5	18	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51722784	T	T	51722784	1	4	48	0	1	0	0	0	0	0	0	0	16749	551	19	4		4	TSHZ2	20	51722784	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1435215	51722784	11302736	1229	52816											
DIDO1	11083	broad.mit.edu	37	chr20	61542314	61542314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgatcgttctcgggctcCtgcttactgggcaggacgcc	12	15	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61542314	A	A	61542314	3	1	48	1	0	0	0	0	1	0	0	0	4562	680	24	2	6257	2	DIDO1	20	61542314	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9819530	61542314	1483206	1230	52817											
TPTE	7179	broad.mit.edu	37	chr21	10969930	10969930	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggatggatggatggggtAtacttgctcatgtgcctgtg	16	5	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10969930	T	T	10969930	1	4	48	0	1	0	0	0	0	0	0	0	16554	464	16	5		5	TPTE	21	10969930	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08		10969930	37159965	1231	52818											
BAGE2	85319	broad.mit.edu	37	chr21	11039060	11039060	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagagtccatcaatccaGtagaaagttcagaatcttct	6	9	5	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11039060	T	T	11039060	1	4	48	0	1	0	0	0	0	0	0	0	1297	1044	36	3		3	BAGE2	21	11039060	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	69130	11039060	37090835	1232	52819											
BAGE2	85319	broad.mit.edu	37	chr21	11044426	11044426	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcagagaaagatgatcaTtcttcaaatggttcaaagga	9	6	4	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11044426	C	C	11044426	1	2	48	0	1	0	0	0	0	0	0	0	1297	1508	52	5		5	BAGE2	21	11044426	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	5366	11044426	37085469	1233	52820											
BAGE2	85319	broad.mit.edu	37	chr21	11059131	11059131	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgaagagagtctgatggGccctgtactgtacagtatga	12	7	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11059131	A	A	11059131	1	1	48	0	1	0	0	0	0	0	0	0	1297	1218	42	4		4	BAGE2	21	11059131	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	14705	11059131	37070764	1234	52821											
BAGE2	85319	broad.mit.edu	37	chr21	11059289	11059289	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagttgaggcaccataCtatctttgtatccaaagcac	6	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11059289	T	T	11059289	1	4	48	0	1	0	0	0	0	0	0	0	1297	580	20	4		4	BAGE2	21	11059289	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	158	11059289	37070606	1235	52822											
BAGE2	85319	broad.mit.edu	37	chr21	11071419	11071419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaaaaaactcacagaCaacaaccaaccagtttaagc	4	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11071419	A	A	11071419	1	1	48	0	1	0	0	0	0	0	0	0	1297	493	17	3		3	BAGE2	21	11071419	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	12130	11071419	37058476	1236	52823											
BAGE2	85319	broad.mit.edu	37	chr21	11074967	11074967	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggattacaggcgtgaactActgcgcccagcccataaatt	10	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11074967	T	T	11074967	1	4	48	0	1	0	0	0	0	0	0	0	1297	406	14	5		5	BAGE2	21	11074967	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3548	11074967	37054928	1237	52824											
BAGE2	85319	broad.mit.edu	37	chr21	11075446	11075446	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttataatcactgttctgCcttgtaattttaggtgaatt	6	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11075446	T	T	11075446	1	4	48	0	1	0	0	0	0	0	0	0	1297	754	26	4		4	BAGE2	21	11075446	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	479	11075446	37054449	1238	52825											
NRIP1	8204	broad.mit.edu	37	chr21	16340221	16340221	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaatcagacagcctcttcCgctttgctgcattccagtcc	7	14	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16340221	T	T	16340221	3	4	48	1	0	0	0	0	1	0	0	0	10747	652	23	4	3187	4	NRIP1	21	16340221	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5264775	16340221	31789674	1239	52826											
CLDN17	26285	broad.mit.edu	37	chr21	31538874	31538874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagggttgtggcaagaGtccccaccatgccaaggaac	13	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31538874	T	T	31538874	3	4	48	1	0	0	0	0	1	0	0	0	3509	1029	36	3	616	3	CLDN17	21	31538874	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	15198653	31538874	16591021	1240	52827											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654512	31654512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttcagaggtctgctacCactgcacaaatacctcagag	8	12	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31654512	A	A	31654512	3	1	48	1	0	0	0	0	1	0	0	0	8614	594	21	2	29	2	KRTAP24-1	21	31654512	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	115638	31654512	16475383	1241	52828											
RUNX1	861	broad.mit.edu	37	chr21	36467136	36467136	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcccccaccctctgccCacctgacccctacacatatt	2	21	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36467136	G	G	36467136	1	3	48	0	1	0	0	0	0	0	0	0	13857	609	21	4		4	RUNX1	21	36467136	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4812624	36467136	11662759	1242	52829											
DOPEY2	9980	broad.mit.edu	37	chr21	37650200	37650200	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccgccctcctcagcctcccGaagtgctgggattacaggtg	11	15	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37650200	A	A	37650200	1	1	48	0	1	0	0	0	0	0	0	0	4748	1073	37	4		4	DOPEY2	21	37650200	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1183064	37650200	10479695	1243	52830											
SH3BGR	6450	broad.mit.edu	37	chr21	40824153	40824153	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaacgttggccttcagtttCttttttgcgtgtagtcagct	9	10	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40824153	T	T	40824153	1	4	48	0	1	0	0	0	0	0	0	0	14353	928	32	4		4	SH3BGR	21	40824153	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3173953	40824153	7305742	1244	52831											
BACE2	25825	broad.mit.edu	37	chr21	42647496	42647496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgtcagcgtcgcccccGtgaccctgaggtcgtcaatg	13	15	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42647496	T	T	42647496	3	4	48	1	0	0	0	0	1	0	0	0	1287	1145	40	3	1536	3	BACE2	21	42647496	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1823343	42647496	5482399	1245	52832											
DNMT3L	29947	broad.mit.edu	37	chr21	45670639	45670639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagctccaccagaaaagcCcctccctcacgtgggcaggg	11	16	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45670639	A	A	45670639	1	1	48	0	1	0	0	0	0	0	0	0	4718	638	22	2		2	DNMT3L	21	45670639	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3023143	45670639	2459256	1246	52833											
COL6A2	1292	broad.mit.edu	37	chr21	47546380	47546380	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagggttcgctagggactGaccctggcctggcccggcct	15	14	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47546380	T	T	47546380	1	4	48	0	1	0	0	0	0	0	0	0	3732	1305	45	3		3	COL6A2	21	47546380	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1875741	47546380	583515	1247	52834											
CCT8L2	150160	broad.mit.edu	37	chr22	17072422	17072422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgcctggcctctggggaGggagcagacgaggcagcaga	17	10	1	2	rs148571019		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17072422	T	T	17072422	3	4	48	1	0	0	0	0	1	0	0	0	2991	1000	35	2	658	2	CCT8L2	22	17072422	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08		17072422	34232144	1248	52835											
CLTCL1	8218	broad.mit.edu	37	chr22	19210312	19210312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacgatgatgaggggaagCtggtctgtgagcttggcctc	15	9	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19210312	A	A	19210312	3	1	48	1	0	0	0	0	1	0	0	0	3599	796	28	3	2681	3	CLTCL1	22	19210312	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2137890	19210312	32094254	1249	52836											
UFD1L	7353	broad.mit.edu	37	chr22	19444059	19444059	+	Intron	DEL	T	-	-													accttgagtgagtgctctaaTttcaaggagcagagggcaca							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19444059	-	-	19444059	6	5	48	0	1	1	0	1	0	0	0	0	17061	1508	52	0		0	UFD1L	22	19444059	Intron	DEL	T	TCGA-17-Z015-01A-01W-0746-08	233747	19444059	31860507	1250	52837											
MYO18B	84700	broad.mit.edu	37	chr22	26181403	26181403	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcttccaggacggagcTgaacctgcaccagatggcag	13	12	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26181403	A	A	26181403	3	1	48	1	0	0	0	0	1	0	0	0	10160	1580	55	5	2359	5	MYO18B	22	26181403	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	6737344	26181403	25123163	1251	52838											
SEZ6L	23544	broad.mit.edu	37	chr22	26640580	26640580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagttgaggtgtgcacCtacctggtcttggaggaggc	17	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26640580	A	A	26640580	1	1	48	0	1	0	0	0	0	0	0	0	14256	696	24	2		2	SEZ6L	22	26640580	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	459177	26640580	24663986	1252	52839											
MN1	4330	broad.mit.edu	37	chr22	28198923	28198923	+	5'Flank	DEL	G	-	-													aaagtgtgtgtagggaaggaGgggggagaaggcctttaatt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28198923	-	-	28198923	6	5	48	0	1	1	0	1	0	0	0	0	9767	1015	35	0		0	MN1	22	28198923	5'Flank	DEL	G	TCGA-17-Z015-01A-01W-0746-08	1558343	28198923	23105643	1253	52840											
WBP2NL	164684	broad.mit.edu	37	chr22	42415661	42415661	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaagtttctgtccttgCgtaggtgattttcataactt	7	8	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42415661	T	T	42415661	1	4	48	0	1	0	0	0	0	0	0	0	17387	783	27	4		4	WBP2NL	22	42415661	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	14216738	42415661	8888905	1254	52841											
MPPED1	758	broad.mit.edu	37	chr22	43830880	43830880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgagctgtggtggatGgggctgcagacacaccaccc	16	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43830880	T	T	43830880	1	4	48	0	1	0	0	0	0	0	0	0	9835	1363	47	2		2	MPPED1	22	43830880	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1415219	43830880	7473686	1255	52842											
GTSE1	51512	broad.mit.edu	37	chr22	46704789	46704789	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggaccaaattgctgctGcctcgagcggcctctgttag	12	14	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46704789	T	T	46704789	2	4	48	1	0	0	0	0	0	0	0	1	6950	1306	46	3		3	GTSE1	22	46704789	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2873909	46704789	4599777	1256	52843											
CSF2RA	1438	broad.mit.edu	37	chrX	1414403	1414403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtaaccctacggtcccCtactcaccacacctagtgta	6	17	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1414403	T	T	1414403	1	4	48	0	1	0	0	0	0	0	0	0	3968	696	24	4		4	CSF2RA	23	1414403	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08		1414403	153856157	1257	52844											
ARSF	416	broad.mit.edu	37	chrX	2990216	2990216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacggcaatgacaccatgaGgtaaggcggtttcatggcca	12	10	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2990216	A	A	2990216	3	1	48	1	0	0	0	0	1	0	0	0	995	1014	35	4	167	4	ARSF	23	2990216	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1575813	2990216	152280344	1258	52845											
ARSF	416	broad.mit.edu	37	chrX	3030288	3030288	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggtggctgctatgtcacCtcattatgcagatgtttcgg	11	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3030288	T	T	3030288	2	4	48	1	0	0	0	0	0	0	0	1	995	668	24	4		4	ARSF	23	3030288	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	40072	3030288	152240272	1259	52846											
ARHGAP6	395	broad.mit.edu	37	chrX	11682955	11682955	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcgcggacatctcggcGgggctgcacctgaggaccac	14	15	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11682955	A	A	11682955	1	1	48	0	1	0	0	0	0	0	0	0	889	1131	39	4		4	ARHGAP6	23	11682955	5'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8652667	11682955	143587605	1260	52847											
FRMPD4	9758	broad.mit.edu	37	chrX	12722586	12722586	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaagcaaatcaaaacttGgtaccaccgggtaaaaaggt	9	8	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12722586	C	C	12722586	3	2	48	1	0	0	0	0	1	0	0	0	6119	1339	47	4	1221	4	FRMPD4	23	12722586	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1039631	12722586	142547974	1261	52848											
SCML2	10389	broad.mit.edu	37	chrX	18341953	18341953	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatcacattagaaagaataCgctatttttaaaactttctt	3	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18341953	T	T	18341953	1	4	48	0	1	0	0	0	0	0	0	0	14023	551	19	4		4	SCML2	23	18341953	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5619367	18341953	136928607	1262	52849											
GPR64	10149	broad.mit.edu	37	chrX	19045212	19045212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaggaagtcaagaaccAattggctctataacctttgg	9	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19045212	G	G	19045212	1	3	48	0	1	0	0	0	0	0	0	0	6770	145	5	5		5	GPR64	23	19045212	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	703259	19045212	136225348	1263	52850											
SMPX	23676	broad.mit.edu	37	chrX	21762044	21762044	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgttgtgaagaaaaatgcGtctgaaaagtacatcttcaa	8	6	3	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21762044	A	A	21762044	1	1	48	0	1	0	0	0	0	0	0	0	14924	1160	40	4		4	SMPX	23	21762044	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2716832	21762044	133508516	1264	52851											
FAM47A	158724	broad.mit.edu	37	chrX	34148219	34148219	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcgtcaagaacgtcaggtTcatcaggctttttaagtaag	10	7	4	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34148219	C	C	34148219	3	2	48	1	0	0	0	0	1	0	0	0	5620	1783	62	5	202	5	FAM47A	23	34148219	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	12386175	34148219	121122341	1265	52852											
CYBB	1536	broad.mit.edu	37	chrX	37652816	37652816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcctccctttgtctccCtgtggcttatcatagagtca	9	13	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37652816	A	A	37652816	1	1	48	0	1	0	0	0	0	0	0	0	4166	696	24	2		2	CYBB	23	37652816	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3504597	37652816	117617744	1266	52853											
CXorf27	25763	broad.mit.edu	37	chrX	37850383	37850383	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaaccgtgagccccacagCgctgagagtgatgtgactcg	12	12	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37850383	G	G	37850383	3	3	48	1	0	0	0	0	1	0	0	0	4138	767	27	4	293	4	CXorf27	23	37850383	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	197567	37850383	117420177	1267	52854											
NDP	4693	broad.mit.edu	37	chrX	43809121	43809121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcgcatgccccctgagcatCgcagccgcagtgccttcagc	11	17	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43809121	T	T	43809121	3	4	48	1	0	0	0	0	1	0	0	0	10345	884	31	4	79	4	NDP	23	43809121	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	5958738	43809121	111461439	1268	52855											
CCNB3	85417	broad.mit.edu	37	chrX	50053674	50053674	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacctttggccttgcaggaGgagcccagcactgagaagga	14	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50053674	A	A	50053674	2	1	48	1	0	0	0	0	0	0	0	1	2944	991	35	4		4	CCNB3	23	50053674	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6244553	50053674	105216886	1269	52856											
CCNB3	85417	broad.mit.edu	37	chrX	50089666	50089666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cataggagcacaactcacctCgtgtggatgactttgtgtac	10	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50089666	A	A	50089666	3	1	48	1	0	0	0	0	1	0	0	0	2944	884	31	3	3700	3	CCNB3	23	50089666	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	35992	50089666	105180894	1270	52857											
DGKK	139189	broad.mit.edu	37	chrX	50131476	50131476	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctatcaaaatgagccccatGtctgacctgggaacagcccc	9	14	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50131476	A	A	50131476	1	1	48	0	1	0	0	0	0	0	0	0	4512	1392	48	4		4	DGKK	23	50131476	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	41810	50131476	105139084	1271	52858											
KDM5C	8242	broad.mit.edu	37	chrX	53225784	53225784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagcgtgatacctaaggcCacccatgggcatcctcttct	10	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53225784	T	T	53225784	1	4	48	0	1	0	0	0	0	0	0	0	8205	609	21	4		4	KDM5C	23	53225784	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	3094308	53225784	102044776	1272	52859											
IQSEC2	23096	broad.mit.edu	37	chrX	53267402	53267402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggatgtaaagcgcagccggtCctggaggctgggggcattga	18	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53267402	A	A	53267402	3	1	48	1	0	0	0	0	1	0	0	0	7888	855	30	3	1280	3	IQSEC2	23	53267402	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	41618	53267402	102003158	1273	52860											
FAM120C	54954	broad.mit.edu	37	chrX	54112423	54112423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttaggcccaggatggaGcactctaggtacagtctcac	11	10	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54112423	T	T	54112423	1	4	48	0	1	0	0	0	0	0	0	0	5464	986	34	3		3	FAM120C	23	54112423	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	845021	54112423	101158137	1274	52861											
WNK3	65267	broad.mit.edu	37	chrX	54249934	54249934	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtcagatggccctgctaTatcaggttgcagcagcaagg	12	9	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54249934	G	G	54249934	1	3	48	0	1	0	0	0	0	0	0	0	17506	1421	49	5		5	WNK3	23	54249934	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	137511	54249934	101020626	1275	52862											
MAGED2	10916	broad.mit.edu	37	chrX	54839747	54839747	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacctgggtggatgatgggtGaatggtcctgaactctctgc	15	8	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54839747	C	C	54839747	1	2	48	0	1	0	0	0	0	0	0	0	9276	1305	45	4		4	MAGED2	23	54839747	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	589813	54839747	100430813	1276	52863											
MAGED2	10916	broad.mit.edu	37	chrX	54841073	54841073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtcttagaaataaaggCtttgaacctctctttccaag	7	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54841073	A	A	54841073	1	1	48	0	1	0	0	0	0	0	0	0	9276	812	28	3		3	MAGED2	23	54841073	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1326	54841073	100429487	1277	52864											
PFKFB1	5207	broad.mit.edu	37	chrX	54987335	54987335	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcactgcctctcgtcgatacTggcctaaattaaacactgaa	6	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54987335	A	A	54987335	3	1	48	1	0	0	0	0	1	0	0	0	11855	1580	55	5	1224	5	PFKFB1	23	54987335	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	146262	54987335	100283225	1278	52865											
PFKFB1	5207	broad.mit.edu	37	chrX	54989706	54989706	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacctttagttggtgttccTatccagttgagatatcgtgt	9	7	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54989706	C	C	54989706	3	2	48	1	0	0	0	0	1	0	0	0	11855	1512	53	5	1260	5	PFKFB1	23	54989706	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	2371	54989706	100280854	1279	52866											
UBQLN2	29978	broad.mit.edu	37	chrX	56591133	56591133	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgcatgtacactgacattcAagagccgatgctgaatgccg	11	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56591133	C	C	56591133	3	2	48	1	0	0	0	0	1	0	0	0	17023	130	5	5	829	5	UBQLN2	23	56591133	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1601427	56591133	98679427	1280	52867											
FAM123B	139285	broad.mit.edu	37	chrX	63411303	63411303	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcttctcgggttctggcctCcctgccatgagcttcccaag	11	15	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63411303	G	G	63411303	3	3	48	1	0	0	0	0	1	0	0	0	5469	864	30	4	1547	4	FAM123B	23	63411303	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6820170	63411303	91859257	1281	52868											
ZC4H2	55906	broad.mit.edu	37	chrX	64250710	64250710	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagatatctcatctcccacCcctgatatcttattaccctg	3	14	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64250710	G	G	64250710	1	3	48	0	1	0	0	0	0	0	0	0	17704	638	22	4		4	ZC4H2	23	64250710	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	839407	64250710	91019850	1282	52869											
LAS1L	81887	broad.mit.edu	37	chrX	64749020	64749020	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attccttctcaagacttctcTcaggtagctggcaagaggga	10	10	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64749020	G	G	64749020	1	3	48	0	1	0	0	0	0	0	0	0	8708	1566	54	5		5	LAS1L	23	64749020	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	498310	64749020	90521540	1283	52870											
HEPH	9843	broad.mit.edu	37	chrX	65419004	65419004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcgagctagattgagaGgctcaaccgaacacaacaga	12	9	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65419004	T	T	65419004	1	4	48	0	1	0	0	0	0	0	0	0	7121	1015	35	2		2	HEPH	23	65419004	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	669984	65419004	89851556	1284	52871											
HEPH	9843	broad.mit.edu	37	chrX	65486237	65486237	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagatagttaccttttagaGtactccccatcccaggatgc	7	11	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65486237	A	A	65486237	1	1	48	0	1	0	0	0	0	0	0	0	7121	1044	36	4		4	HEPH	23	65486237	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	67233	65486237	89784323	1285	52872											
AR	367	broad.mit.edu	37	chrX	66766619	66766619	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgcggtaagtttttccttCcagaaatgtcgcctttcggc	9	11	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66766619	T	T	66766619	1	4	48	0	1	0	0	0	0	0	0	0	838	870	30	4		4	AR	23	66766619	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1280382	66766619	88503941	1286	52873											
OPHN1	4983	broad.mit.edu	37	chrX	67327529	67327529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttcaccatgttggccagGctggtctcgaactcgttacc	10	12	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67327529	T	T	67327529	1	4	48	0	1	0	0	0	0	0	0	0	10969	1218	42	3		3	OPHN1	23	67327529	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	560910	67327529	87943031	1287	52874											
PJA1	64219	broad.mit.edu	37	chrX	68381182	68381182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaacatgcagcggcacaCggggcaggtgcctgacttct	15	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68381182	A	A	68381182	3	1	48	1	0	0	0	0	1	0	0	0	12056	536	19	3	35	3	PJA1	23	68381182	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1053653	68381182	86889378	1288	52875											
AWAT1	158833	broad.mit.edu	37	chrX	69455988	69455988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggactatttccccattaCggtaagtatctcttccccag	7	13	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69455988	A	A	69455988	3	1	48	1	0	0	0	0	1	0	0	0	1239	550	19	3	264	3	AWAT1	23	69455988	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1074806	69455988	85814572	1289	52876											
ARR3	407	broad.mit.edu	37	chrX	69500516	69500516	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataatgattgattctggaGggtctgagggcatccaaaga	12	5	2	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69500516	T	T	69500516	1	4	48	0	1	0	0	0	0	0	0	0	983	1015	35	2		2	ARR3	23	69500516	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	44528	69500516	85770044	1290	52877											
KIF4A	24137	broad.mit.edu	37	chrX	69595841	69595841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgttggggactgctttcCcagcctagttctggcttttc	10	11	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69595841	A	A	69595841	1	1	48	0	1	0	0	0	0	0	0	0	8373	638	22	2		2	KIF4A	23	69595841	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	95325	69595841	85674719	1291	52878											
TEX11	56159	broad.mit.edu	37	chrX	70073066	70073067	+	Intron	INS	-	T	T													acagatgttactactaataaINSttgcctcagctaaaagtcaa							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70073067	T	T	70073066	6	5	48	0	1	1	1	0	0	0	0	0	15896	116	4	0		0	TEX11	23	70073066	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	477225	70073066	85197494	1292	52879											
NONO	4841	broad.mit.edu	37	chrX	70510515	70510515	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaataaaacttttaacttgGagaagcaaaaccatactcca	5	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70510515	T	T	70510515	4	4	48	1	0	0	0	0	0	1	0	0	10629	1175	41	3	30	3	NONO	23	70510515	Nonsense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	437449	70510515	84760045	1293	52880											
OGT	8473	broad.mit.edu	37	chrX	70767659	70767659	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aataatgatatcaccttcttCcccccctccccccaatcttt	1	18	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70767659	A	A	70767659	1	1	48	0	1	0	0	0	0	0	0	0	10942	870	30	3		3	OGT	23	70767659	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	257144	70767659	84502901	1294	52881											
OGT	8473	broad.mit.edu	37	chrX	70767788	70767788	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcaattgagacgcaacCgaactttgcagtagcttgga	11	8	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70767788	G	G	70767788	3	3	48	1	0	0	0	0	1	0	0	0	10942	652	23	4	581	4	OGT	23	70767788	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	129	70767788	84502772	1295	52882											
OGT	8473	broad.mit.edu	37	chrX	70777049	70777049	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttatttattttccaggattCagggaatattccagaagcca	7	7	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70777049	G	G	70777049	4	3	48	1	0	0	0	0	0	1	0	0	10942	838	29	4	1367	4	OGT	23	70777049	Nonsense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	9261	70777049	84493511	1296	52883											
NHSL2	340527	broad.mit.edu	37	chrX	71288403	71288403	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcacagccaggctgctGgggctggaatgggctgctga	15	11	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71288403	A	A	71288403	1	1	48	0	1	0	0	0	0	0	0	0	10507	1363	47	4		4	NHSL2	23	71288403	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	511354	71288403	83982157	1297	52884											
HDAC8	55869	broad.mit.edu	37	chrX	71684338	71684339	+	Intron	DNP	CC	AA	AA													atgcaagaaagccaagttttCcaagttcagtgccaatggac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	71684339	AA	AA	71684338	1	1	48	0	1	0	0	0	0	0	0	0	7080	870	30	3		3	HDAC8	23	71684338	Intron	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	395935	71684338	83586222	1298	52885											
HDAC8	55869	broad.mit.edu	37	chrX	71787903	71787903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggcaaaaatcagaagagCtggttaaaaggtgaactgga	13	4	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71787903	A	A	71787903	1	1	48	0	1	0	0	0	0	0	0	0	7080	812	28	3		3	HDAC8	23	71787903	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	103565	71787903	83482657	1299	52886											
RLIM	51132	broad.mit.edu	37	chrX	73811612	73811612	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtgactggggccctatgtCgaccctctcgcctggcacct	11	15	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73811612	T	T	73811612	3	4	48	1	0	0	0	0	1	0	0	0	13501	884	31	4	340	4	RLIM	23	73811612	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2023709	73811612	81458948	1300	52887											
ZDHHC15	158866	broad.mit.edu	37	chrX	74725692	74725692	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaacagtcactgtgaagaGacaggagaaagagagacaga	12	6	1	6			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74725692	T	T	74725692	1	4	48	0	1	0	0	0	0	0	0	0	17731	957	33	3		3	ZDHHC15	23	74725692	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	914080	74725692	80544868	1301	52888											
CXorf26	51260	broad.mit.edu	37	chrX	75396667	75396667	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctctcctggccttagtaCgtcagcctcttgcatttgtc	7	15	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75396667	T	T	75396667	1	4	48	0	1	0	0	0	0	0	0	0	4137	551	19	4		4	CXorf26	23	75396667	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	670975	75396667	79873893	1302	52889											
ATP7A	538	broad.mit.edu	37	chrX	77298315	77298315	+	Intron	SNP	G	T	T													catggcttgacctttgaggaGtatgagactgccctatgtgg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77298315	T	T	77298315	1	4	48	0	1	0	0	0	0	0	0	0	1194	1044	36	3		3	ATP7A	23	77298315	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1901648	77298315	77972245	1303	52890	252	2									
ATP7A	538	broad.mit.edu	37	chrX	77298317	77298317	+	Intron	SNP	A	C	C													tggcttgacctttgaggagtAtgagactgccctatgtggtc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77298317	C	C	77298317	1	2	48	0	1	0	0	0	0	0	0	0	1194	464	16	5		5	ATP7A	23	77298317	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	2	77298317	77972243	1304	52891	252	2									
GPR174	84636	broad.mit.edu	37	chrX	78426599	78426599	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacactgtcattcttgtgcCaggtctcatagggaatatat	8	8	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78426599	T	T	78426599	3	4	48	1	0	0	0	0	1	0	0	0	6737	594	21	4	97	4	GPR174	23	78426599	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1128282	78426599	76843961	1305	52892											
TBX22	50945	broad.mit.edu	37	chrX	79279574	79279574	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttacaggcggatgttcccCtctgttcgggtcaaggtgaa	12	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79279574	T	T	79279574	2	4	48	1	0	0	0	0	0	0	0	1	15780	668	24	4		4	TBX22	23	79279574	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	852975	79279574	75990986	1306	52893											
TBX22	50945	broad.mit.edu	37	chrX	79286261	79286261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttctcagtctttagcccCactcatgatggaagtgccta	8	12	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79286261	A	A	79286261	3	1	48	1	0	0	0	0	1	0	0	0	15780	594	21	2	1244	2	TBX22	23	79286261	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	6687	79286261	75984299	1307	52894											
BRWD3	254065	broad.mit.edu	37	chrX	79936786	79936786	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagcttttaaatgatttatCtgctatcataaagaaataaa	4	5	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79936786	G	G	79936786	1	3	48	0	1	0	0	0	0	0	0	0	1535	928	32	4		4	BRWD3	23	79936786	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	650525	79936786	75333774	1308	52895											
BRWD3	254065	broad.mit.edu	37	chrX	79936893	79936893	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttggctttccctgggtcaTggctatttccacttcggcta	9	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79936893	C	C	79936893	3	2	48	1	0	0	0	0	1	0	0	0	1535	1464	51	5	815	5	BRWD3	23	79936893	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	107	79936893	75333667	1309	52896											
BRWD3	254065	broad.mit.edu	37	chrX	79975018	79975018	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtatgctctattaactgGtaaatgtggaacatctcctt	8	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79975018	A	A	79975018	3	1	48	1	0	0	0	0	1	0	0	0	1535	1261	44	4	3490	4	BRWD3	23	79975018	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	38125	79975018	75295542	1310	52897											
HMGN5	79366	broad.mit.edu	37	chrX	80371621	80371621	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttttttccaacttataaActaaaaggcaaataggattt	4	5	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80371621	G	G	80371621	1	3	48	0	1	0	0	0	0	0	0	0	7305	58	2	5		5	HMGN5	23	80371621	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	396603	80371621	74898939	1311	52898											
POU3F4	5456	broad.mit.edu	37	chrX	82764010	82764010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacactgtatggtaacgtGttctcgcagaccaccatctg	10	12	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82764010	T	T	82764010	2	4	48	1	0	0	0	0	0	0	0	1	12373	1364	48	3		3	POU3F4	23	82764010	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2392389	82764010	72506550	1312	52899											
CYLC1	1538	broad.mit.edu	37	chrX	83127978	83127978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaaaattttgcaatggCcacccatttacacagctgcc	6	12	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83127978	A	A	83127978	3	1	48	1	0	0	0	0	1	0	0	0	4174	739	26	3	276	3	CYLC1	23	83127978	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	363968	83127978	72142582	1313	52900											
RPS6KA6	27330	broad.mit.edu	37	chrX	83360759	83360759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttccaattcataacttcaTtagcttagctgatacctaga	5	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83360759	A	A	83360759	1	1	48	0	1	0	0	0	0	0	0	0	13766	1508	52	5		5	RPS6KA6	23	83360759	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	232781	83360759	71909801	1314	52901											
RPS6KA6	27330	broad.mit.edu	37	chrX	83402986	83402986	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccttatgcaagtaataCacagcatatttcttaaacta	3	9	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83402986	G	G	83402986	1	3	48	0	1	0	0	0	0	0	0	0	13766	493	17	4		4	RPS6KA6	23	83402986	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	42227	83402986	71867574	1315	52902											
ZNF711	7552	broad.mit.edu	37	chrX	84523197	84523197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttaacccaaggaatggtGggcaaagtaagattttgtag	11	4	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84523197	T	T	84523197	1	4	48	0	1	0	0	0	0	0	0	0	18244	1363	47	2		2	ZNF711	23	84523197	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1120211	84523197	70747363	1316	52903											
CHM	1121	broad.mit.edu	37	chrX	85158768	85158768	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgctactgttgtatctctTatgttgtgctaggtggagaa	11	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85158768	A	A	85158768	1	1	48	0	1	0	0	0	0	0	0	0	3381	1769	61	5		5	CHM	23	85158768	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	635571	85158768	70111792	1317	52904											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177681	89177681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaggtttctgtcacatcCccgtcttctccagaacttgt	7	13	5	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177681	A	A	89177681	2	1	48	1	0	0	0	0	0	0	0	1	15950	610	22	2		2	TGIF2LX	23	89177681	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4018913	89177681	66092879	1318	52905											
PABPC5	140886	broad.mit.edu	37	chrX	90690871	90690871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtctcagccagatgacCgcttaagaaagtctggagtg	13	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90690871	A	A	90690871	3	1	48	1	0	0	0	0	1	0	0	0	11461	652	23	1	297	1	PABPC5	23	90690871	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1513190	90690871	64579689	1319	52906											
PCDH11X	27328	broad.mit.edu	37	chrX	91090515	91090515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacctggtatggacttgttGtccgggacgtacattttcgc	12	9	0	0	rs144734965	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91090515	T	T	91090515	3	4	48	1	0	0	0	0	1	0	0	0	11602	1368	48	3	14	3	PCDH11X	23	91090515	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	399644	91090515	64180045	1320	52907											
PCDH11X	27328	broad.mit.edu	37	chrX	91133598	91133598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgattaatgaactggtgCgcaaaagcactgaagcacca	9	10	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91133598	A	A	91133598	3	1	48	1	0	0	0	0	1	0	0	0	11602	768	27	3	2365	3	PCDH11X	23	91133598	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	43083	91133598	64136962	1321	52908											
RPL36A	6173	broad.mit.edu	37	chrX	100646602	100646602	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgtgacatttgtgttgtaGaataacatacgagtccgggt	11	5	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100646602	C	C	100646602	1	2	48	0	1	0	0	0	0	0	0	0	13698	957	33	4		4	RPL36A	23	100646602	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	9513004	100646602	54623958	1322	52909											
GLA	2717	broad.mit.edu	37	chrX	100658672	100658672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatccacccgcctcggcCtcccaaagtgttgggattac	11	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100658672	A	A	100658672	1	1	48	0	1	0	0	0	0	0	0	0	6490	696	24	2		2	GLA	23	100658672	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	12070	100658672	54611888	1323	52910											
ARMCX3	51566	broad.mit.edu	37	chrX	100880242	100880242	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctggaaccagagctagGgccagggcaagggccagggc	18	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100880242	T	T	100880242	3	4	48	1	0	0	0	0	1	0	0	0	965	1223	43	2	275	2	ARMCX3	23	100880242	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	221570	100880242	54390318	1324	52911											
NXF5	55998	broad.mit.edu	37	chrX	101091849	101091849	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcacacagtgatccccagtCagaatcttgcttgacactca	6	14	4	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101091849	A	A	101091849	1	1	48	0	1	0	0	0	0	0	0	0	10881	841	29	3		3	NXF5	23	101091849	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	211607	101091849	54178711	1325	52912											
NXF5	55998	broad.mit.edu	37	chrX	101096623	101096623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcccaaagactaagtaCagggaatgccctcagcacac	8	14	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101096623	A	A	101096623	1	1	48	0	1	0	0	0	0	0	0	0	10881	493	17	3		3	NXF5	23	101096623	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4774	101096623	54173937	1326	52913											
NXF5	55998	broad.mit.edu	37	chrX	101098123	101098123	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggtccttgtggacatcCctcatctccatgcttccatc	8	15	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101098123	A	A	101098123	1	1	48	0	1	0	0	0	0	0	0	0	10881	638	22	2		2	NXF5	23	101098123	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1500	101098123	54172437	1327	52914											
TMSB15A	11013	broad.mit.edu	37	chrX	101769133	101769133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaagagctccttgctaaGtcatcgaagtctgcatacat	7	10	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101769133	T	T	101769133	1	4	48	0	1	0	0	0	0	0	0	0	16378	1044	36	3		3	TMSB15A	23	101769133	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	671010	101769133	53501427	1328	52915											
ARMCX5	64860	broad.mit.edu	37	chrX	101857109	101857109	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcaagggctagaggaaagGctgaggctggcctgcaagat	16	7	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101857109	A	A	101857109	3	1	48	1	0	0	0	0	1	0	0	0	966	1203	42	4	42	4	ARMCX5	23	101857109	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	87976	101857109	53413451	1329	52916											
NXF3	56000	broad.mit.edu	37	chrX	102337996	102337996	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcacactgttggttcatGgccagctgcagagttagaga	11	9	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102337996	T	T	102337996	2	4	48	1	0	0	0	0	0	0	0	1	10880	1335	47	2		2	NXF3	23	102337996	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	480887	102337996	52932564	1330	52917											
TMEM31	203562	broad.mit.edu	37	chrX	102968777	102968777	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcccagatggaaaagatcGgactgcccatcatactccac	8	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102968777	A	A	102968777	3	1	48	1	0	0	0	0	1	0	0	0	16278	1117	39	4	364	4	TMEM31	23	102968777	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	630781	102968777	52301783	1331	52918											
PLP1	5354	broad.mit.edu	37	chrX	103041173	103041173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccagggtaagcaaggtGtggcgggaggggcatatgtt	19	6	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103041173	T	T	103041173	1	4	48	0	1	0	0	0	0	0	0	0	12199	1392	48	3		3	PLP1	23	103041173	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	72396	103041173	52229387	1332	52919											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104650771	104650771	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagcatgcatctttttgagaGagcagctgggatcgagtata	12	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104650771	T	T	104650771	1	4	48	0	1	0	0	0	0	0	0	0	7732	957	33	3		3	IL1RAPL2	23	104650771	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1609598	104650771	50619789	1333	52920											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104886211	104886211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcattccctcacagccctGctaggtggttggctaatcta	8	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104886211	T	T	104886211	1	4	48	0	1	0	0	0	0	0	0	0	7732	1334	46	3		3	IL1RAPL2	23	104886211	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	235440	104886211	50384349	1334	52921											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105011536	105011536	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaacctgcctctgacgcTactcaacggacagctacccc	7	16	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105011536	A	A	105011536	3	1	48	1	0	0	0	0	1	0	0	0	7732	1522	53	5	1981	5	IL1RAPL2	23	105011536	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	125325	105011536	50259024	1335	52922											
RBM41	55285	broad.mit.edu	37	chrX	106356257	106356257	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagaagccccatgcaattTtattggaagttcatttcaaa	7	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106356257	A	A	106356257	1	1	48	0	1	0	0	0	0	0	0	0	13243	1856	64	5		5	RBM41	23	106356257	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	1344721	106356257	48914303	1336	52923											
ATG4A	115201	broad.mit.edu	37	chrX	107371905	107371905	+	Intron	DEL	A	-	-													aatttacctagccccataatAatggaattgactggttattt							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107371905	-	-	107371905	6	5	48	0	1	1	0	1	0	0	0	0	1100	377	13	0		0	ATG4A	23	107371905	Intron	DEL	A	TCGA-17-Z015-01A-01W-0746-08	1015648	107371905	47898655	1337	52924											
ATG4A	115201	broad.mit.edu	37	chrX	107397076	107397076	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcaatagcaatcatgactGagccaatcactgtttctcag	6	11	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107397076	T	T	107397076	1	4	48	0	1	0	0	0	0	0	0	0	1100	1305	45	3		3	ATG4A	23	107397076	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	25171	107397076	47873484	1338	52925											
COL4A6	1288	broad.mit.edu	37	chrX	107405936	107405936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctctaaagccaagtacCaagtacaaccaccctgctgg	6	15	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107405936	A	A	107405936	1	1	48	0	1	0	0	0	0	0	0	0	3727	609	21	2		2	COL4A6	23	107405936	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	8860	107405936	47864624	1339	52926											
COL4A6	1288	broad.mit.edu	37	chrX	107486545	107486546	+	Intron	INS	-	A	A													aagcccccctcccccatgtgINSactgtattggagatgaggcc					rs5903314		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107486546	A	A	107486545	6	5	48	0	1	1	1	0	0	0	0	0	3727	1305	45	0		0	COL4A6	23	107486545	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	80609	107486545	47784015	1340	52927											
COL4A5	1287	broad.mit.edu	37	chrX	107811887	107811887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacttcctggatttccagGgacaccaggtcttcctgtaa	10	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107811887	T	T	107811887	3	4	48	1	0	0	0	0	1	0	0	0	3726	1232	43	2	323	2	COL4A5	23	107811887	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	325342	107811887	47458673	1341	52928											
COL4A5	1287	broad.mit.edu	37	chrX	107930822	107930822	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattacacgccacagccagAcaacggatgcaccacaatgc	7	14	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107930822	G	G	107930822	3	3	48	1	0	0	0	0	1	0	0	0	3726	275	10	5	4605	5	COL4A5	23	107930822	Missense_Mutation	SNP	A	TCGA-17-Z015-01A-01W-0746-08	118935	107930822	47339738	1342	52929											
GUCY2F	2986	broad.mit.edu	37	chrX	108618974	108618975	+	Intron	DNP	GG	TT	TT													agcaggcctccccacaacaaGgttttcacccattttattag							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	108618975	TT	TT	108618974	1	4	48	0	1	0	0	0	0	0	0	0	6963	1015	35	2		2	GUCY2F	23	108618974	Intron	DNP	GG	TCGA-17-Z015-01A-01W-0746-08	688152	108618974	46651586	1343	52930											
PAK3	5063	broad.mit.edu	37	chrX	110289543	110289543	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacaatagatggaatggtAttgtgtaagggagggcttac	13	3	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110289543	G	G	110289543	1	3	48	0	1	0	0	0	0	0	0	0	11496	464	16	5		5	PAK3	23	110289543	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1670569	110289543	44981017	1344	52931											
PAK3	5063	broad.mit.edu	37	chrX	110463776	110463776	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagtcaaatggggtggggGttctttacctttcaaatgaa	12	6	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110463776	T	T	110463776	1	4	48	0	1	0	0	0	0	0	0	0	11496	1276	44	3		3	PAK3	23	110463776	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	174233	110463776	44806784	1345	52932											
LHFPL1	340596	broad.mit.edu	37	chrX	111914783	111914783	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggataagattattctctcGaggaccatttggatccctgt	9	9	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111914783	T	T	111914783	1	4	48	0	1	0	0	0	0	0	0	0	8836	1073	37	3		3	LHFPL1	23	111914783	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	1451007	111914783	43355777	1346	52933											
HTR2C	3358	broad.mit.edu	37	chrX	113858185	113858185	+	Intron	DEL	T	-	-													tacacatcaaagtttcttagTtttttctatttcatatgcta							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113858185	-	-	113858185	6	5	48	0	1	1	0	1	0	0	0	0	7513	1740	60	0		0	HTR2C	23	113858185	Intron	DEL	T	TCGA-17-Z015-01A-01W-0746-08	1943402	113858185	41412375	1347	52934											
HTR2C	3358	broad.mit.edu	37	chrX	113865593	113865593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccaacgtggcgaaaccCgtctctactaaaaatacaaa	7	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113865593	A	A	113865593	1	1	48	0	1	0	0	0	0	0	0	0	7513	667	23	1		1	HTR2C	23	113865593	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	7408	113865593	41404967	1348	52935											
LUZP4	51213	broad.mit.edu	37	chrX	114524286	114524286	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgagggggtggtacacgCgccctacctcggagtgtgtg	18	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114524286	A	A	114524286	1	1	48	0	1	0	0	0	0	0	0	0	9175	783	27	3		3	LUZP4	23	114524286	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	658693	114524286	40746274	1349	52936											
LONRF3	79836	broad.mit.edu	37	chrX	118123451	118123451	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagtctgatggacccagcTaaagtgaagggggatggtca	15	7	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118123451	A	A	118123451	2	1	48	1	0	0	0	0	0	0	0	1	8983	1509	53	5		5	LONRF3	23	118123451	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	3599165	118123451	37147109	1350	52937											
LONRF3	79836	broad.mit.edu	37	chrX	118148390	118148390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagtgtttgtgattagatGggtatgtggctgccattcag	13	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118148390	T	T	118148390	1	4	48	0	1	0	0	0	0	0	0	0	8983	1363	47	2		2	LONRF3	23	118148390	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	24939	118148390	37122170	1351	52938											
LONRF3	79836	broad.mit.edu	37	chrX	118151704	118151704	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccccactgccgtcgggggGagtcttcttgtaaatatatc	10	11	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118151704	T	T	118151704	1	4	48	0	1	0	0	0	0	0	0	0	8983	1189	41	3		3	LONRF3	23	118151704	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	3314	118151704	37118856	1352	52939											
NKRF	55922	broad.mit.edu	37	chrX	118724170	118724171	+	Frame_Shift_Ins	INS	-	A	A													gtgttttttgaagaattttcINSaaagcctcgtcggcagctgc							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118724171	A	A	118724170	7	5	48	1	0	1	1	0	0	0	0	0	10542	825	29	0	858	0	NKRF	23	118724170	Frame_Shift_Ins	INS	-	TCGA-17-Z015-01A-01W-0746-08	572466	118724170	36546390	1353	52940											
NDUFA1	4694	broad.mit.edu	37	chrX	119005827	119005827	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggcgaagccaggtcacCtttcaaggacccagaagtag	13	10	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119005827	A	A	119005827	1	1	48	0	1	0	0	0	0	0	0	0	10354	696	24	2		2	NDUFA1	23	119005827	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	281657	119005827	36264733	1354	52941											
RHOXF2B	727940	broad.mit.edu	37	chrX	119293345	119293345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcggtaagcccattgCtctggttggcgcgcggtttg	14	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119293345	T	T	119293345	1	4	48	0	1	0	0	0	0	0	0	0	13458	812	28	4		4	RHOXF2B	23	119293345	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	287518	119293345	35977215	1355	52942											
ATP1B4	23439	broad.mit.edu	37	chrX	119509423	119509423	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccttctaaagatgaaccgGgtatattggcttttcatatc	7	8	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119509423	T	T	119509423	2	4	48	1	0	0	0	0	0	0	0	1	1139	1246	43	2		2	ATP1B4	23	119509423	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	216078	119509423	35761137	1356	52943											
GRIA3	2892	broad.mit.edu	37	chrX	122387081	122387081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggcctaattgtacattGtatttctaaccctacaagtt	7	8	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122387081	T	T	122387081	1	4	48	0	1	0	0	0	0	0	0	0	6835	1392	48	3		3	GRIA3	23	122387081	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2877658	122387081	32883479	1357	52944											
XIAP	331	broad.mit.edu	37	chrX	123022382	123022382	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagattttcatgttttttaGatgtgcttaatttttaggtg	9	2	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123022382	T	T	123022382	1	4	48	0	1	0	0	0	0	0	0	0	17555	957	33	3		3	XIAP	23	123022382	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	635301	123022382	32248178	1358	52945											
STAG2	10735	broad.mit.edu	37	chrX	123204916	123204916	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttggattctgtttctgtGttaaatatgtaaattatttg	8	2	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123204916	A	A	123204916	1	1	48	0	1	0	0	0	0	0	0	0	15361	1392	48	4		4	STAG2	23	123204916	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	182534	123204916	32065644	1359	52946											
ODZ1	10178	broad.mit.edu	37	chrX	123637367	123637367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaatatgtattatacagCattaggaaagtagtattcat	6	3	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123637367	A	A	123637367	1	1	48	0	1	0	0	0	0	0	0	0	10929	725	25	3		3	ODZ1	23	123637367	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	432451	123637367	31633193	1360	52947											
ODZ1	10178	broad.mit.edu	37	chrX	123822530	123822530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacactgtgagcattgaggGctcacttcagaaatgtccct	9	10	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123822530	T	T	123822530	1	4	48	0	1	0	0	0	0	0	0	0	10929	1218	42	3		3	ODZ1	23	123822530	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	185163	123822530	31448030	1361	52948											
ODZ1	10178	broad.mit.edu	37	chrX	123870869	123870869	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagatggactgaatcctgCgtgctggttgggggagctgg	18	7	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123870869	T	T	123870869	2	4	48	1	0	0	0	0	0	0	0	1	10929	755	27	4		4	ODZ1	23	123870869	Silent	SNP	C	TCGA-17-Z015-01A-01W-0746-08	48339	123870869	31399691	1362	52949											
SMARCA1	6594	broad.mit.edu	37	chrX	128657044	128657044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggttccgccgccgacccCcgcacccgccgcccctagcc	11	24	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128657044	A	A	128657044	1	1	48	0	1	0	0	0	0	0	0	0	14882	638	22	2		2	SMARCA1	23	128657044	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	4786175	128657044	26613516	1363	52950											
SASH3	54440	broad.mit.edu	37	chrX	128926858	128926858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtatcagggaggcacaaCtgccccagggatggggacca	14	11	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128926858	A	A	128926858	1	1	48	0	1	0	0	0	0	0	0	0	13961	580	20	3		3	SASH3	23	128926858	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	269814	128926858	26343702	1364	52951											
IGSF1	3547	broad.mit.edu	37	chrX	130410305	130410305	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagtgttattgtaagacaCaatatatgtttgttgttaaa	7	2	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130410305	T	T	130410305	1	4	48	0	1	0	0	0	0	0	0	0	7666	493	17	4		4	IGSF1	23	130410305	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1483447	130410305	24860255	1365	52952											
IGSF1	3547	broad.mit.edu	37	chrX	130416704	130416704	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaagtagccaggtcttgggGaaagtgtctaggatgagacc	15	7	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130416704	A	A	130416704	2	1	48	1	0	0	0	0	0	0	0	1	7666	1165	41	4		4	IGSF1	23	130416704	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	6399	130416704	24853856	1366	52953											
GPC3	2719	broad.mit.edu	37	chrX	133087439	133087439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctttctcccaattgtcCttatggctgactctttttga	6	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133087439	A	A	133087439	1	1	48	0	1	0	0	0	0	0	0	0	6664	696	24	2		2	GPC3	23	133087439	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2670735	133087439	22183121	1367	52954											
PHF6	84295	broad.mit.edu	37	chrX	133547965	133547965	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaactgcatatatttaatgCcaagaaggcagctgcccatt	7	9	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133547965	G	G	133547965	3	3	48	1	0	0	0	0	1	0	0	0	11933	739	26	4	723	4	PHF6	23	133547965	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	460526	133547965	21722595	1368	52955											
ZNF75D	7626	broad.mit.edu	37	chrX	134421668	134421668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctgcccattgttttctGggcaattttcattctggtct	7	11	4	0	rs150700463	byFrequency	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134421668	T	T	134421668	3	4	48	1	0	0	0	0	1	0	0	0	18263	1357	47	2	602	2	ZNF75D	23	134421668	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	873703	134421668	20848892	1369	52956											
SAGE1	55511	broad.mit.edu	37	chrX	134992425	134992425	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgttgtattaccttttcAggcctcaattttagggttct	7	7	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134992425	T	T	134992425	1	4	48	0	1	0	0	0	0	0	0	0	13920	203	7	5		5	SAGE1	23	134992425	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	570757	134992425	20278135	1370	52957											
SLC9A6	10479	broad.mit.edu	37	chrX	135098824	135098824	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtttgagcttctcaatttCttggcagagaatttcatctt	7	7	4	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135098824	A	A	135098824	3	1	48	1	0	0	0	0	1	0	0	0	14832	912	32	3	1295	3	SLC9A6	23	135098824	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	106399	135098824	20171736	1371	52958											
FHL1	2273	broad.mit.edu	37	chrX	135290730	135290730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccgctgtggaggaccaGtattactgcgtggattgcta	12	9	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135290730	T	T	135290730	3	4	48	1	0	0	0	0	1	0	0	0	5935	1020	36	3	749	3	FHL1	23	135290730	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	191906	135290730	19979830	1372	52959											
GPR112	139378	broad.mit.edu	37	chrX	135427340	135427340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaaccagacagcatttcCattggcaacaactgatatga	7	9	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135427340	A	A	135427340	3	1	48	1	0	0	0	0	1	0	0	0	6694	594	21	2	1485	2	GPR112	23	135427340	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	136610	135427340	19843220	1373	52960											
GPR112	139378	broad.mit.edu	37	chrX	135427841	135427841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaccatttggacttctaGgccagaccaggccctgctgg	12	12	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135427841	T	T	135427841	3	4	48	1	0	0	0	0	1	0	0	0	6694	1000	35	2	1986	2	GPR112	23	135427841	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	501	135427841	19842719	1374	52961											
BRS3	680	broad.mit.edu	37	chrX	135570738	135570738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctccattatatttgccaGgatgtgaaattgggcaaaaa	8	6	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135570738	T	T	135570738	1	4	48	0	1	0	0	0	0	0	0	0	1531	1015	35	2		2	BRS3	23	135570738	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	142897	135570738	19699822	1375	52962											
HTATSF1	27336	broad.mit.edu	37	chrX	135593890	135593890	+	Frame_Shift_Del	DEL	G	-	-													cttgaagctgctgataaaaaGgcggaagaaggtgatgcaga							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135593890	-	-	135593890	7	5	48	1	0	1	0	1	0	0	0	0	7503	991	35	0	2020	0	HTATSF1	23	135593890	Frame_Shift_Del	DEL	G	TCGA-17-Z015-01A-01W-0746-08	23152	135593890	19676670	1376	52963											
CD40LG	959	broad.mit.edu	37	chrX	135738610	135738610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctgagcggtagccaccCaaggggaaaggctgggatgc	16	10	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135738610	A	A	135738610	1	1	48	0	1	0	0	0	0	0	0	0	3046	609	21	2		2	CD40LG	23	135738610	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	144720	135738610	19531950	1377	52964											
ARHGEF6	9459	broad.mit.edu	37	chrX	135754059	135754059	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcacagcaaagcaggcCgcattcccaggtaaggagga	13	11	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135754059	A	A	135754059	1	1	48	0	1	0	0	0	0	0	0	0	912	667	23	1		1	ARHGEF6	23	135754059	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	15449	135754059	19516501	1378	52965											
FGF13	2258	broad.mit.edu	37	chrX	137939894	137939894	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagagcctcagaaaagcagCgaatgtcttaaatcaaatat	7	7	3	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137939894	T	T	137939894	1	4	48	0	1	0	0	0	0	0	0	0	5899	783	27	4		4	FGF13	23	137939894	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	2185835	137939894	17330666	1379	52966											
MCF2	4168	broad.mit.edu	37	chrX	138669857	138669857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgcaggagtggtatttctTaaagaataatcacttactca	7	6	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138669857	C	C	138669857	1	2	48	0	1	0	0	0	0	0	0	0	9471	1769	61	5		5	MCF2	23	138669857	Intron	SNP	T	TCGA-17-Z015-01A-01W-0746-08	729963	138669857	16600703	1380	52967											
MCF2	4168	broad.mit.edu	37	chrX	138688010	138688010	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaatgtttcaagtattatCatcatgagaaggtaaaaata	7	4	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138688010	A	A	138688010	1	1	48	0	1	0	0	0	0	0	0	0	9471	841	29	3		3	MCF2	23	138688010	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	18153	138688010	16582550	1381	52968											
ATP11C	286410	broad.mit.edu	37	chrX	138869417	138869418	+	Intron	INS	-	A	A													ccgtacctatcaaaaacaatINSaaaaaagaccttgtgtatct							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138869418	A	A	138869417	6	5	48	0	1	1	1	0	0	0	0	0	1125	1421	49	0		0	ATP11C	23	138869417	Intron	INS	-	TCGA-17-Z015-01A-01W-0746-08	181407	138869417	16401143	1382	52969											
SPANXC	64663	broad.mit.edu	37	chrX	140336710	140336710	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaggcaaagccacaccCttgagctttgtttgatcata	8	10	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140336710	T	T	140336710	1	4	48	0	1	0	0	0	0	0	0	0	15103	696	24	4		4	SPANXC	23	140336710	5'Flank	SNP	C	TCGA-17-Z015-01A-01W-0746-08	1467293	140336710	14933850	1383	52970											
SPANXC	64663	broad.mit.edu	37	chrX	140373583	140373583	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaggaactagagaaacacAtgactttagtgtcaggaagg	12	5	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140373583	T	T	140373583	1	4	48	0	1	0	0	0	0	0	0	0	15103	232	8	5		5	SPANXC	23	140373583	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	36873	140373583	14896977	1384	52971											
MAGEC3	139081	broad.mit.edu	37	chrX	140967445	140967445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatagagaggagacctaGccccactgggagtctgaagt	12	11	1	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140967445	T	T	140967445	1	4	48	0	1	0	0	0	0	0	0	0	9274	986	34	3		3	MAGEC3	23	140967445	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	593862	140967445	14303115	1385	52972											
SPANXN4	441525	broad.mit.edu	37	chrX	142117844	142117844	+	Intron	DEL	G	-	-													aaaagggcattttttagtttGttttttttttaagtgggagt					rs142435885		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142117844	-	-	142117844	6	5	48	0	1	1	0	1	0	0	0	0	15109	1392	48	0		0	SPANXN4	23	142117844	Intron	DEL	G	TCGA-17-Z015-01A-01W-0746-08	1150399	142117844	13152716	1386	52973											
SLITRK4	139065	broad.mit.edu	37	chrX	142718957	142718957	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaaacaactgtatgcttcTgaataaagagaaataatcta	6	6	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142718957	C	C	142718957	1	2	48	0	1	0	0	0	0	0	0	0	14859	1595	55	5		5	SLITRK4	23	142718957	5'UTR	SNP	T	TCGA-17-Z015-01A-01W-0746-08	601113	142718957	12551603	1387	52974											
SPANXN2	494119	broad.mit.edu	37	chrX	142803585	142803585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagcaggtcccccacttcCacaggtgtctgcagtattcc	8	14	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142803585	A	A	142803585	1	1	48	0	1	0	0	0	0	0	0	0	15107	609	21	2		2	SPANXN2	23	142803585	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	84628	142803585	12466975	1388	52975											
SPANXN1	494118	broad.mit.edu	37	chrX	144336524	144336527	+	Intron	DEL	ACCA	-	-													ttacccattagaacccaatcAccaaccactccaggttttga							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144336527	-	-	144336524	6	5	48	0	1	1	0	1	0	0	0	0	15106	174	6	0		0	SPANXN1	23	144336524	Intron	DEL	ACCA	TCGA-17-Z015-01A-01W-0746-08	1532939	144336524	10934036	1389	52976											
SPANXN1	494118	broad.mit.edu	37	chrX	144336736	144336736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggatctgggcagtatgGcttgctgccaggcaggatat	17	7	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144336736	T	T	144336736	1	4	48	0	1	0	0	0	0	0	0	0	15106	1218	42	3		3	SPANXN1	23	144336736	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	212	144336736	10933824	1390	52977											
SLITRK2	84631	broad.mit.edu	37	chrX	144898835	144898835	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggttcttaaatatctgccTgcgaactcccaaagactggg	10	10	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144898835	A	A	144898835	1	1	48	0	1	0	0	0	0	0	0	0	14857	1595	55	5		5	SLITRK2	23	144898835	5'Flank	SNP	T	TCGA-17-Z015-01A-01W-0746-08	562099	144898835	10371725	1391	52978											
FMR1NB	158521	broad.mit.edu	37	chrX	147084781	147084781	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacagtgaaaatgctcatgGccaatctctggaagaagatt	9	8	2	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147084781	C	C	147084781	3	2	48	1	0	0	0	0	1	0	0	0	6019	1203	42	4	344	4	FMR1NB	23	147084781	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2185946	147084781	8185779	1392	52979											
FMR1NB	158521	broad.mit.edu	37	chrX	147088156	147088156	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttgtcttccagtaattAtttaattagggaaagtggta	8	4	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147088156	G	G	147088156	1	3	48	0	1	0	0	0	0	0	0	0	6019	464	16	5		5	FMR1NB	23	147088156	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	3375	147088156	8182404	1393	52980											
AFF2	2334	broad.mit.edu	37	chrX	148038095	148038095	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacccaagcgtcagacagcTgtcacagctgtggagaaacc	10	12	2	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148038095	A	A	148038095	2	1	48	1	0	0	0	0	0	0	0	1	357	1567	55	5		5	AFF2	23	148038095	Silent	SNP	T	TCGA-17-Z015-01A-01W-0746-08	949939	148038095	7232465	1394	52981											
AFF2	2334	broad.mit.edu	37	chrX	148048255	148048255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgcttgacattcaaagCatttatgacaaggtgtttta	8	6	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148048255	A	A	148048255	1	1	48	0	1	0	0	0	0	0	0	0	357	725	25	3		3	AFF2	23	148048255	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	10160	148048255	7222305	1395	52982											
AFF2	2334	broad.mit.edu	37	chrX	148055169	148055169	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcaatcatcttcctacActcatttcagctagaattag	4	11	5	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148055169	G	G	148055169	1	3	48	0	1	0	0	0	0	0	0	0	357	174	6	5		5	AFF2	23	148055169	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	6914	148055169	7215391	1396	52983											
AFF2	2334	broad.mit.edu	37	chrX	148059872	148059872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcactggcattaacagaaGcctttcctcatcaccacagc	6	14	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148059872	T	T	148059872	1	4	48	0	1	0	0	0	0	0	0	0	357	986	34	3		3	AFF2	23	148059872	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	4703	148059872	7210688	1397	52984											
IDS	3423	broad.mit.edu	37	chrX	148586155	148586155	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttggatggaggaagataagGaggaaaagatgaatagctga	16	1	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148586155	T	T	148586155	1	4	48	0	1	0	0	0	0	0	0	0	7573	1189	41	3		3	IDS	23	148586155	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	526283	148586155	6684405	1398	52985											
MAGEA11	4110	broad.mit.edu	37	chrX	148797451	148797451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatatttcccacagttcGgcctgctgacctaaccagag	8	14	0	3			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148797451	T	T	148797451	3	4	48	1	0	0	0	0	1	0	0	0	9253	1116	39	1	332	1	MAGEA11	23	148797451	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	211296	148797451	6473109	1399	52986											
CD99L2	83692	broad.mit.edu	37	chrX	149984762	149984762	+	Intron	SNP	A	C	C													ttctgctcacttttctttggAggctgagggtggtgaggtgg							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149984762	C	C	149984762	1	2	48	0	1	0	0	0	0	0	0	0	3081	319	11	5		5	CD99L2	23	149984762	Intron	SNP	A	TCGA-17-Z015-01A-01W-0746-08	1187311	149984762	5285798	1400	52987	253	2									
CD99L2	83692	broad.mit.edu	37	chrX	149984764	149984764	+	Intron	SNP	G	T	T													ctgctcacttttctttggagGctgagggtggtgaggtggac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149984764	T	T	149984764	1	4	48	0	1	0	0	0	0	0	0	0	3081	1218	42	3		3	CD99L2	23	149984764	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	2	149984764	5285796	1401	52988	253	2									
PASD1	139135	broad.mit.edu	37	chrX	150780100	150780100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcattttattattgttcCactatttaattacattatta	1	6	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150780100	A	A	150780100	1	1	48	0	1	0	0	0	0	0	0	0	11565	609	21	2		2	PASD1	23	150780100	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	795336	150780100	4490460	1402	52989											
CNGA2	1260	broad.mit.edu	37	chrX	150911174	150911174	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtccaaatttttaggaagCccactggacatggtgttgga	12	7	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150911174	T	T	150911174	1	4	48	0	1	0	0	0	0	0	0	0	3629	754	26	4		4	CNGA2	23	150911174	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	131074	150911174	4359386	1403	52990											
GABRE	2564	broad.mit.edu	37	chrX	151123779	151123780	+	Intron	DNP	CC	AA	AA													catgtgccataaccccagtaCccttgctagcatgtctctac							TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	151123780	AA	AA	151123779	1	1	48	0	1	0	0	0	0	0	0	0	6230	522	18	3		3	GABRE	23	151123779	Intron	DNP	CC	TCGA-17-Z015-01A-01W-0746-08	212605	151123779	4146781	1404	52991											
MAGEA10	4109	broad.mit.edu	37	chrX	151304000	151304000	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcctcctccacagccagGggagcctgtgcaccctcgag	11	17	0	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151304000	T	T	151304000	2	4	48	1	0	0	0	0	0	0	0	1	9252	1219	43	2		2	MAGEA10	23	151304000	Silent	SNP	G	TCGA-17-Z015-01A-01W-0746-08	180221	151304000	3966560	1405	52992											
GABRQ	55879	broad.mit.edu	37	chrX	151820033	151820033	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccatcgactcacatctgCgggataagctccccaacatt	6	16	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151820033	G	G	151820033	3	3	48	1	0	0	0	0	1	0	0	0	6235	759	27	4	976	4	GABRQ	23	151820033	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	516033	151820033	3450527	1406	52993											
MAGEA3	4102	broad.mit.edu	37	chrX	151935268	151935268	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actcatgcaggggtgggtagGaaatgtgaggtcctccactg	15	8	1	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151935268	A	A	151935268	3	1	48	1	0	0	0	0	1	0	0	0	9257	1174	41	4	49	4	MAGEA3	23	151935268	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	115235	151935268	3335292	1407	52994											
PNMA5	114824	broad.mit.edu	37	chrX	152160070	152160070	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actacactccatggggatgcCtacaatcagcagggcctttc	9	13	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152160070	T	T	152160070	3	4	48	1	0	0	0	0	1	0	0	0	12251	681	24	4	1277	4	PNMA5	23	152160070	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	224802	152160070	3110490	1408	52995											
IDH3G	3421	broad.mit.edu	37	chrX	153053076	153053076	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagggcatggggagaagaGacccatgtgctactgaagag	17	6	0	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153053076	T	T	153053076	1	4	48	0	1	0	0	0	0	0	0	0	7568	957	33	3		3	IDH3G	23	153053076	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	893006	153053076	2217484	1409	52996											
MECP2	4204	broad.mit.edu	37	chrX	153297826	153297826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttccggcacagccggggcgGagcctgacccttctgatgtc	13	15	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153297826	T	T	153297826	3	4	48	1	0	0	0	0	1	0	0	0	9516	1174	41	3	1259	3	MECP2	23	153297826	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	244750	153297826	1972734	1410	52997											
TEX28	1527	broad.mit.edu	37	chrX	153505595	153505595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtaaggggtagtggagCactgtaatgctgtggagagg	18	4	0	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153505595	A	A	153505595	1	1	48	0	1	0	0	0	0	0	0	0	15906	725	25	3		3	TEX28	23	153505595	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	207769	153505595	1764965	1411	52998											
TKTL1	8277	broad.mit.edu	37	chrX	153524116	153524116	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcggagggagctgcaccgaCatcacataaacgcactgggc	13	12	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153524116	T	T	153524116	1	4	48	0	1	0	0	0	0	0	0	0	16058	493	17	4		4	TKTL1	23	153524116	5'UTR	SNP	C	TCGA-17-Z015-01A-01W-0746-08	18521	153524116	1746444	1412	52999											
TKTL1	8277	broad.mit.edu	37	chrX	153541000	153541000	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagatgccattatcaaatTaattgagagccagatacaga	8	7	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153541000	A	A	153541000	4	1	48	1	0	0	0	0	0	1	0	0	16058	1764	61	5	762	5	TKTL1	23	153541000	Nonsense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	16884	153541000	1729560	1413	53000											
TAZ	6901	broad.mit.edu	37	chrX	153642004	153642005	+	Intron	DNP	CG	TT	TT													acctatgggggtaggcatccCgggagccaacatgaggccca					rs35731638		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	153642005	TT	TT	153642004	1	4	48	0	1	0	0	0	0	0	0	0	15715	667	23	4		4	TAZ	23	153642004	Intron	DNP	CG	TCGA-17-Z015-01A-01W-0746-08	101004	153642004	1628556	1414	53001											
GDI1	2664	broad.mit.edu	37	chrX	153670677	153670677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagggaccaggaagggcatGgcccattgtgaggcctgtcc	15	10	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153670677	T	T	153670677	1	4	48	0	1	0	0	0	0	0	0	0	6384	1363	47	2		2	GDI1	23	153670677	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	28673	153670677	1599883	1415	53002											
PLXNA3	55558	broad.mit.edu	37	chrX	153688886	153688886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggcagggcatctgccaGttcctgcgtctggacgacct	12	13	3	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153688886	T	T	153688886	3	4	48	1	0	0	0	0	1	0	0	0	12216	1020	36	3	365	3	PLXNA3	23	153688886	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	18209	153688886	1581674	1416	53003											
PLXNA3	55558	broad.mit.edu	37	chrX	153697726	153697726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtggcccacagagtgGcgccagggccgcatgactcg	15	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153697726	T	T	153697726	3	4	48	1	0	0	0	0	1	0	0	0	12216	1212	42	3	4701	3	PLXNA3	23	153697726	Missense_Mutation	SNP	G	TCGA-17-Z015-01A-01W-0746-08	8840	153697726	1572834	1417	53004											
G6PD	2539	broad.mit.edu	37	chrX	153762748	153762748	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcgttacccccttgaacCcctcttcggggagtgaggat	12	13	1	2			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153762748	T	T	153762748	1	4	48	0	1	0	0	0	0	0	0	0	6206	638	22	4		4	G6PD	23	153762748	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	65022	153762748	1507812	1418	53005											
MPP1	4354	broad.mit.edu	37	chrX	154014616	154014616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaacttcagtcccgcctcCttgcaagggatcagattgtc	9	13	2	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154014616	A	A	154014616	3	1	48	1	0	0	0	0	1	0	0	0	9827	695	24	2	888	2	MPP1	23	154014616	Missense_Mutation	SNP	C	TCGA-17-Z015-01A-01W-0746-08	251868	154014616	1255944	1419	53006											
MPP1	4354	broad.mit.edu	37	chrX	154022754	154022754	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggaggaggaggaggaCgaggaggaggaataggcctg	22	4	0	0	rs142007963	by1000genomes	TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154022754	T	T	154022754	1	4	48	0	1	0	0	0	0	0	0	0	9827	551	19	4		4	MPP1	23	154022754	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	8138	154022754	1247806	1420	53007											
F8	2157	broad.mit.edu	37	chrX	154088834	154088834	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtagttactcctgtgactTtcattgtcttctggaagtcc	9	9	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154088834	C	C	154088834	3	2	48	1	0	0	0	0	1	0	0	0	5393	1841	64	5	290	5	F8	23	154088834	Missense_Mutation	SNP	T	TCGA-17-Z015-01A-01W-0746-08	66080	154088834	1181726	1421	53008											
F8	2157	broad.mit.edu	37	chrX	154132396	154132396	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagagaagcctgttaaaatCtattatataagtttctttct	5	6	3	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154132396	A	A	154132396	1	1	48	0	1	0	0	0	0	0	0	0	5393	928	32	3		3	F8	23	154132396	Intron	SNP	C	TCGA-17-Z015-01A-01W-0746-08	43562	154132396	1138164	1422	53009											
F8	2157	broad.mit.edu	37	chrX	154250903	154250903	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatctttagctcccaggagGggaaaaaagtaaaatttctg	9	6	2	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154250903	T	T	154250903	1	4	48	0	1	0	0	0	0	0	0	0	5393	1247	43	2		2	F8	23	154250903	5'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	118507	154250903	1019657	1423	53010											
MTCP1	4515	broad.mit.edu	37	chrX	154294351	154294351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcagcacccgcgcacaGgacacaggtgtgactttttg	12	13	0	1			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154294351	T	T	154294351	1	4	48	0	1	0	0	0	0	0	0	0	10009	1015	35	2		2	MTCP1	23	154294351	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	43448	154294351	976209	1424	53011											
BRCC3	79184	broad.mit.edu	37	chrX	154317508	154317508	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagacacagcttattgacaGaagatttttaaattttcatt	6	5	1	4			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154317508	C	C	154317508	1	2	48	0	1	0	0	0	0	0	0	0	1509	957	33	4		4	BRCC3	23	154317508	Intron	SNP	G	TCGA-17-Z015-01A-01W-0746-08	23157	154317508	953052	1425	53012											
TMLHE	55217	broad.mit.edu	37	chrX	154720960	154720960	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggtttaaatcaaacaaGtggatccatgttataacatg	7	5	1	0			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154720960	T	T	154720960	1	4	48	0	1	0	0	0	0	0	0	0	16355	1044	36	3		3	TMLHE	23	154720960	3'UTR	SNP	G	TCGA-17-Z015-01A-01W-0746-08	403452	154720960	549600	1426	53013											
AJAP1	55966	broad.mit.edu	37	chr1	4812650	4812650	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggagggagcccagcacaGcttccagcatgcagctctga	13	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4812650	A	A	4812650	1	1	49	0	1	0	0	0	0	0	0	0	438	986	34	4		4	AJAP1	1	4812650	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08		4812650	244437971	1	53014											
CELA2B	51032	broad.mit.edu	37	chr1	15807706	15807706	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaggtaactgccattcccTgggcgcttggcctgctcacc	10	15	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15807706	A	A	15807706	1	1	49	0	1	0	0	0	0	0	0	0	3242	1595	55	5		5	CELA2B	1	15807706	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	10995056	15807706	233442915	2	53015											
SPEN	23013	broad.mit.edu	37	chr1	16255645	16255645	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagcctgagcagcctgcAgatggggtaagtgctgtgga	15	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16255645	T	T	16255645	2	4	49	1	0	0	0	0	0	0	0	1	15156	175	7	5		5	SPEN	1	16255645	Silent	SNP	A	TCGA-17-Z016-01A-01W-0746-08	447939	16255645	232994976	3	53016											
ACTL8	81569	broad.mit.edu	37	chr1	18108508	18108508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggtttgggagactggcCatacctcctaggtgttacag	15	8	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18108508	A	A	18108508	1	1	49	0	1	0	0	0	0	0	0	0	202	609	21	2		2	ACTL8	1	18108508	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1852863	18108508	231142113	4	53017											
PLA2G2F	64600	broad.mit.edu	37	chr1	20466690	20466690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgaagaagttcttcaccGtggccatccttgctggcagc	11	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20466690	T	T	20466690	3	4	49	1	0	0	0	0	1	0	0	0	12094	1145	40	3	154	3	PLA2G2F	1	20466690	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2358182	20466690	228783931	5	53018											
ZBTB40	9923	broad.mit.edu	37	chr1	22800356	22800356	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtcttaggaattgaacCtgagttcgagtgtggatttt	11	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22800356	G	G	22800356	1	3	49	0	1	0	0	0	0	0	0	0	17668	696	24	4		4	ZBTB40	1	22800356	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2333666	22800356	226450265	6	53019											
ZNF436	80818	broad.mit.edu	37	chr1	23693528	23693528	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagaaaggtagaatcctTacttacctagtgagacaaca	8	8	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23693528	A	A	23693528	1	1	49	0	1	0	0	0	0	0	0	0	18036	1769	61	5		5	ZNF436	1	23693528	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	893172	23693528	225557093	7	53020											
ARID1A	8289	broad.mit.edu	37	chr1	27100613	27100613	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttgatttttaggttttgTatatttttctacttaagcaa	5	3	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27100613	C	C	27100613	1	2	49	0	1	0	0	0	0	0	0	0	915	1653	57	5		5	ARID1A	1	27100613	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3407085	27100613	222150008	8	53021											
PHACTR4	65979	broad.mit.edu	37	chr1	28792381	28792381	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaagaaactctggatttttGagtttaagagccacgggcca	11	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28792381	C	C	28792381	1	2	49	0	1	0	0	0	0	0	0	0	11907	1305	45	4		4	PHACTR4	1	28792381	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1691768	28792381	220458240	9	53022											
HCRTR1	3061	broad.mit.edu	37	chr1	32087211	32087211	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggtgaggcccactctgggCaggggctaggccagtcactg	16	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32087211	G	G	32087211	1	3	49	0	1	0	0	0	0	0	0	0	7068	725	25	4		4	HCRTR1	1	32087211	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3294830	32087211	217163410	10	53023											
CSMD2	114784	broad.mit.edu	37	chr1	34071053	34071053	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagggctctgggtctgggcActcttgaagttcataggctg	14	8	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34071053	T	T	34071053	3	4	49	1	0	0	0	0	1	0	0	0	3979	159	6	5	4204	5	CSMD2	1	34071053	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1983842	34071053	215179568	11	53024											
CSMD2	114784	broad.mit.edu	37	chr1	34071436	34071436	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccaggcaccagcctaactCctttcatgttgcttatctca	7	14	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34071436	A	A	34071436	1	1	49	0	1	0	0	0	0	0	0	0	3979	870	30	3		3	CSMD2	1	34071436	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	383	34071436	215179185	12	53025											
CSMD2	114784	broad.mit.edu	37	chr1	34377422	34377422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatgcctaggctcaaagGtagatgccagagccccgggg	16	10	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34377422	T	T	34377422	1	4	49	0	1	0	0	0	0	0	0	0	3979	1276	44	3		3	CSMD2	1	34377422	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	305986	34377422	214873199	13	53026											
EIF2C1	26523	broad.mit.edu	37	chr1	36352617	36352617	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagcttgtgtgcaatttctGtccagcactttctgaggtag	11	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36352617	C	C	36352617	1	2	49	0	1	0	0	0	0	0	0	0	5045	1392	48	4		4	EIF2C1	1	36352617	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1975195	36352617	212898004	14	53027											
MAP7D1	55700	broad.mit.edu	37	chr1	36645329	36645329	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggaggctgtgcagaaagagGagcccatcccacaggagcct	14	11	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36645329	C	C	36645329	3	2	49	1	0	0	0	0	1	0	0	0	9359	1175	41	4	2351	4	MAP7D1	1	36645329	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	292712	36645329	212605292	15	53028											
GRIK3	2899	broad.mit.edu	37	chr1	37285483	37285483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggagagggacagtcagCctgggaagcaaggggcatcc	18	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37285483	A	A	37285483	1	1	49	0	1	0	0	0	0	0	0	0	6841	754	26	3		3	GRIK3	1	37285483	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	640154	37285483	211965138	16	53029											
EPHA10	284656	broad.mit.edu	37	chr1	38226928	38226928	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcactggaaactccacaaGacttcagggctctccttggg	9	13	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38226928	T	T	38226928	1	4	49	0	1	0	0	0	0	0	0	0	5208	957	33	3		3	EPHA10	1	38226928	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	941445	38226928	211023693	17	53030											
INPP5B	3633	broad.mit.edu	37	chr1	38353938	38353938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaatagacatctggggcCtggataccattgctcagcca	9	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38353938	A	A	38353938	3	1	49	1	0	0	0	0	1	0	0	0	7825	680	24	2	1925	2	INPP5B	1	38353938	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	127010	38353938	210896683	18	53031											
HIVEP3	59269	broad.mit.edu	37	chr1	42046898	42046898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagtaggctggagaggaaGcggtggggcttgaaataagg	18	4	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42046898	T	T	42046898	3	4	49	1	0	0	0	0	1	0	0	0	7255	971	34	3	3673	3	HIVEP3	1	42046898	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3692960	42046898	207203723	19	53032											
SPATA6	54558	broad.mit.edu	37	chr1	48791147	48791147	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgaatcgacaaactgaGggatccacattctctgagtt	8	10	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48791147	C	C	48791147	1	2	49	0	1	0	0	0	0	0	0	0	15129	1015	35	4		4	SPATA6	1	48791147	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6744249	48791147	200459474	20	53033											
AGBL4	84871	broad.mit.edu	37	chr1	49409776	49409776	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggcactggcctgcctcaTtgagctcatgatatggcatg	11	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49409776	G	G	49409776	1	3	49	0	1	0	0	0	0	0	0	0	377	1508	52	5		5	AGBL4	1	49409776	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	618629	49409776	199840845	21	53034											
EPS15	2060	broad.mit.edu	37	chr1	51871533	51871533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtgaaacttggatctgCacaaggaggttgattatgaa	12	5	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51871533	A	A	51871533	1	1	49	0	1	0	0	0	0	0	0	0	5234	725	25	3		3	EPS15	1	51871533	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2461757	51871533	197379088	22	53035											
NRD1	4898	broad.mit.edu	37	chr1	52276267	52276267	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctactttattgaggtAtagttgacaaatatcaagta	6	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52276267	G	G	52276267	1	3	49	0	1	0	0	0	0	0	0	0	10740	464	16	5		5	NRD1	1	52276267	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	404734	52276267	196974354	23	53036											
SSBP3	23648	broad.mit.edu	37	chr1	54759284	54759284	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaatacagcaaccaccctCtgcacaggcaggttcctctc	7	15	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54759284	T	T	54759284	1	4	49	0	1	0	0	0	0	0	0	0	15299	928	32	4		4	SSBP3	1	54759284	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2483017	54759284	194491337	24	53037											
DAB1	1600	broad.mit.edu	37	chr1	57756695	57756695	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacttgaagttctgtctcaGttgacatcctacttaatcct	5	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57756695	C	C	57756695	3	2	49	1	0	0	0	0	1	0	0	0	4250	1029	36	4	1711	4	DAB1	1	57756695	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2997411	57756695	191493926	25	53038											
DAB1	1600	broad.mit.edu	37	chr1	58357814	58357814	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accagagcctatagcactatAgtagacatctatgaggttag	9	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58357814	T	T	58357814	1	4	49	0	1	0	0	0	0	0	0	0	4250	435	15	5		5	DAB1	1	58357814	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	601119	58357814	190892807	26	53039											
ROR1	4919	broad.mit.edu	37	chr1	64516641	64516641	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttccatttactgttttagAaggaatctaacatttagtgg	7	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64516641	G	G	64516641	1	3	49	0	1	0	0	0	0	0	0	0	13637	261	9	5		5	ROR1	1	64516641	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	6158827	64516641	184733980	27	53040											
SGIP1	84251	broad.mit.edu	37	chr1	67091582	67091582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacggaagaaagaaaaggaCactgattctacgtatgtact	9	6	1	3	rs149425441		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67091582	A	A	67091582	3	1	49	1	0	0	0	0	1	0	0	0	14319	477	17	3	69	3	SGIP1	1	67091582	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2574941	67091582	182159039	28	53041											
SLC35D1	23169	broad.mit.edu	37	chr1	67513052	67513052	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaaatgccaagtcagagcTgcaaaacataagcaacactt	6	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67513052	A	A	67513052	5	1	49	1	0	0	0	0	0	0	1	0	14695	1594	55	5	559	5	SLC35D1	1	67513052	Splice_Site	SNP	T	TCGA-17-Z016-01A-01W-0746-08	421470	67513052	181737569	29	53042											
LRRC7	57554	broad.mit.edu	37	chr1	70249105	70249105	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaataggatatacaaaaagGttgtcttgcaaaccagtgga	10	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70249105	C	C	70249105	1	2	49	0	1	0	0	0	0	0	0	0	9107	1276	44	4		4	LRRC7	1	70249105	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2736053	70249105	179001516	30	53043											
LRRC7	57554	broad.mit.edu	37	chr1	70397075	70397076	+	Intron	DNP	CC	AA	AA													acttgttgctgaagagtaccCccagttttgtgtactacgca							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70397076	AA	AA	70397075	1	1	49	0	1	0	0	0	0	0	0	0	9107	638	22	2		2	LRRC7	1	70397075	Intron	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	147970	70397075	178853546	31	53044											
TNNI3K	51086	broad.mit.edu	37	chr1	74958127	74958127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattagaaattttattatctGttagcctaggtcctctagtt	6	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74958127	T	T	74958127	1	4	49	0	1	0	0	0	0	0	0	0	16452	1392	48	3		3	TNNI3K	1	74958127	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4561052	74958127	174292494	32	53045											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76951632	76951632	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttctcattggtttcaaaGaacatctttatttctgcctt	5	8	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76951632	T	T	76951632	1	4	49	0	1	0	0	0	0	0	0	0	15343	957	33	3		3	ST6GALNAC3	1	76951632	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1993505	76951632	172298989	33	53046											
AK5	26289	broad.mit.edu	37	chr1	78001542	78001542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctccagattggagaccCacagttggtgatctgtatgg	11	10	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78001542	A	A	78001542	3	1	49	1	0	0	0	0	1	0	0	0	443	594	21	2	1489	2	AK5	1	78001542	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1049910	78001542	171249079	34	53047											
GIPC2	54810	broad.mit.edu	37	chr1	78578042	78578042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccaaggaagtgtgatcCtgttaggcaaccttgttgac	11	9	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78578042	A	A	78578042	1	1	49	0	1	0	0	0	0	0	0	0	6457	696	24	2		2	GIPC2	1	78578042	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	576500	78578042	170672579	35	53048											
LPHN2	23266	broad.mit.edu	37	chr1	82024520	82024520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacagatggaaaagaagagCgatataatgaaccttgcacc	10	7	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82024520	A	A	82024520	1	1	49	0	1	0	0	0	0	0	0	0	9003	783	27	3		3	LPHN2	1	82024520	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3446478	82024520	167226101	36	53049											
DNASE2B	58511	broad.mit.edu	37	chr1	84878197	84878197	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagggacaaaaattccTccattttgcaaagtcggatt	9	10	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84878197	A	A	84878197	3	1	49	1	0	0	0	0	1	0	0	0	4705	1551	54	5	731	5	DNASE2B	1	84878197	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2853677	84878197	164372424	37	53050											
MCOLN3	55283	broad.mit.edu	37	chr1	85488055	85488055	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtagaagtcccaagaagtAtgctacagacatcataacta	8	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85488055	G	G	85488055	3	3	49	1	0	0	0	0	1	0	0	0	9490	449	16	5	553	5	MCOLN3	1	85488055	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	609858	85488055	163762566	38	53051											
DPYD	1806	broad.mit.edu	37	chr1	97671758	97671758	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacaggggaggcaaggagCtactcaaaatccatatcctt	12	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97671758	T	T	97671758	1	4	49	0	1	0	0	0	0	0	0	0	4785	812	28	4		4	DPYD	1	97671758	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	12183703	97671758	151578863	39	53052											
DPYD	1806	broad.mit.edu	37	chr1	98115830	98115830	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatatttcaagtgcagcTctttccctggcatagaacag	8	10	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98115830	A	A	98115830	1	1	49	0	1	0	0	0	0	0	0	0	4785	1566	54	5		5	DPYD	1	98115830	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	444072	98115830	151134791	40	53053											
LPPR5	163404	broad.mit.edu	37	chr1	99374265	99374265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcatatgaaaggccccagGgctaatggtacctaaaatgg	11	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99374265	T	T	99374265	1	4	49	0	1	0	0	0	0	0	0	0	9015	1247	43	2		2	LPPR5	1	99374265	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1258435	99374265	149876356	41	53054											
COL11A1	1301	broad.mit.edu	37	chr1	103488444	103488444	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaagatcagaatccctgcCgtctatttctttgttttcat	6	10	4	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103488444	G	G	103488444	3	3	49	1	0	0	0	0	1	0	0	0	3699	652	23	4	4561	4	COL11A1	1	103488444	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4114179	103488444	145762177	42	53055											
NTNG1	22854	broad.mit.edu	37	chr1	107712764	107712764	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagagtaactggtgactgTagcctagacgagttgatgca	14	7	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107712764	C	C	107712764	1	2	49	0	1	0	0	0	0	0	0	0	10799	1653	57	5		5	NTNG1	1	107712764	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	4224320	107712764	141537857	43	53056											
VAV3	10451	broad.mit.edu	37	chr1	108152603	108152603	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctaggatataaaaaaGcaaaaacagattaagtttac	7	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108152603	C	C	108152603	1	2	49	0	1	0	0	0	0	0	0	0	17260	986	34	4		4	VAV3	1	108152603	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	439839	108152603	141098018	44	53057											
SYPL2	284612	broad.mit.edu	37	chr1	110018429	110018429	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctaaaaaccattcattgcGtgccactccagattcaaata	4	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110018429	A	A	110018429	1	1	49	0	1	0	0	0	0	0	0	0	15582	1160	40	4		4	SYPL2	1	110018429	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1865826	110018429	139232192	45	53058											
LRIG2	9860	broad.mit.edu	37	chr1	113636068	113636068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagtccataatataatcCcagaaataaatgcacaggca	6	9	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113636068	A	A	113636068	3	1	49	1	0	0	0	0	1	0	0	0	9032	623	22	2	411	2	LRIG2	1	113636068	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3617639	113636068	135614553	46	53059											
CSDE1	7812	broad.mit.edu	37	chr1	115280655	115280655	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttaacagcaatgggtttccCagtccgtcggtccgatgata	10	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115280655	G	G	115280655	3	3	49	1	0	0	0	0	1	0	0	0	3963	594	21	4	2226	4	CSDE1	1	115280655	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1644587	115280655	133969966	47	53060											
CASQ2	845	broad.mit.edu	37	chr1	116260236	116260236	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attgctgtgcagcgctgtagGaacctggtagtctataacat	11	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116260236	T	T	116260236	1	4	49	0	1	0	0	0	0	0	0	0	2707	1189	41	3		3	CASQ2	1	116260236	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	979581	116260236	132990385	48	53061											
IGSF3	3321	broad.mit.edu	37	chr1	117172250	117172250	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaatgggtggcgagaaaAtgattgcaaaattggctgga	16	3	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117172250	C	C	117172250	1	2	49	0	1	0	0	0	0	0	0	0	7671	116	4	5		5	IGSF3	1	117172250	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	912014	117172250	132078371	49	53062											
VTCN1	79679	broad.mit.edu	37	chr1	117749226	117749226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctacaacaaggtgcatgaCagagtcccaaccctcaagga	8	14	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117749226	A	A	117749226	1	1	49	0	1	0	0	0	0	0	0	0	17361	493	17	3		3	VTCN1	1	117749226	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	576976	117749226	131501395	50	53063											
SPAG17	200162	broad.mit.edu	37	chr1	118530785	118530785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgggcattttggaggcGtagccaaagactgcttgaat	14	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118530785	T	T	118530785	3	4	49	1	0	0	0	0	1	0	0	0	15095	1145	40	3	1147	3	SPAG17	1	118530785	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	781559	118530785	130719836	51	53064											
ADAM30	11085	broad.mit.edu	37	chr1	120440200	120440200	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataggtactactattatcaCccatactttgcacatgagga	6	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120440200	A	A	120440200	1	1	49	0	1	0	0	0	0	0	0	0	248	522	18	3		3	ADAM30	1	120440200	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1909415	120440200	128810421	52	53065											
NBPF9	400818	broad.mit.edu	37	chr1	144220750	144220750	+	Intron	DEL	C	-	-													gggctgtgtggtttctgattCcccctggcttattctttact							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144220750	-	-	144220750	6	5	49	0	1	1	0	1	0	0	0	0	10294	870	30	0		0	NBPF9	1	144220750	Intron	DEL	C	TCGA-17-Z016-01A-01W-0746-08	23780550	144220750	105029871	53	53066											
PDE4DIP	9659	broad.mit.edu	37	chr1	144930944	144930944	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagtctcctcatctttctgTtgtggagggctagcctggac	11	11	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144930944	C	C	144930944	1	2	49	0	1	0	0	0	0	0	0	0	11737	1722	60	5		5	PDE4DIP	1	144930944	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	710194	144930944	104319677	54	53067											
NBPF10	100132406	broad.mit.edu	37	chr1	145560273	145560273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggggcggtaaaggcccttgTgtaacttccacgttctctaa	11	11	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145560273	A	A	145560273	1	1	49	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145560273	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	629329	145560273	103690348	55	53068											
TARS2	80222	broad.mit.edu	37	chr1	150463816	150463816	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagccaacaggtgtgtcaccCaggtgattgatgcacctcat	10	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150463816	T	T	150463816	1	4	49	0	1	0	0	0	0	0	0	0	15679	609	21	4		4	TARS2	1	150463816	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4903543	150463816	98786805	56	53069											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150531856	150531856	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtgacttctccgagcaacTgttctcacctccccaggccc	7	18	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150531856	A	A	150531856	3	1	49	1	0	0	0	0	1	0	0	0	277	1580	55	5	2990	5	ADAMTSL4	1	150531856	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	68040	150531856	98718765	57	53070											
MRPL9	65005	broad.mit.edu	37	chr1	151732528	151732528	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggagggagagtagatttAgatctgggggctggtggggg	21	3	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151732528	T	T	151732528	4	4	49	1	0	0	0	0	0	0	0	0	9914	433	15	5	5	5	MRPL9	1	151732528	Nonstop_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1200672	151732528	97518093	58	53071											
HRNR	388697	broad.mit.edu	37	chr1	152192588	152192588	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacctgcactagatccttgtCgttcacccctagatgactgt	7	13	1	3	rs140120787	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152192588	T	T	152192588	3	4	49	1	0	0	0	0	1	0	0	0	7426	884	31	4	7039	4	HRNR	1	152192588	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	460060	152192588	97058033	59	53072											
HRNR	388697	broad.mit.edu	37	chr1	152193090	152193090	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctggcctgagccagactCataatggccacggctgtaag	12	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152193090	T	T	152193090	3	4	49	1	0	0	0	0	1	0	0	0	7426	835	29	4	7541	4	HRNR	1	152193090	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	502	152193090	97057531	60	53073											
LCE2D	353141	broad.mit.edu	37	chr1	152636946	152636946	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagctctggtactgaatGgtcaaaaacctgctacagcc	10	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152636946	T	T	152636946	1	4	49	0	1	0	0	0	0	0	0	0	8740	1363	47	2		2	LCE2D	1	152636946	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	443856	152636946	96613675	61	53074											
ATP8B2	57198	broad.mit.edu	37	chr1	154315240	154315240	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcagcctggcactctaGcctttcctaagagccttctt	9	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154315240	C	C	154315240	1	2	49	0	1	0	0	0	0	0	0	0	1199	986	34	4		4	ATP8B2	1	154315240	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1678294	154315240	94935381	62	53075											
ADAM15	8751	broad.mit.edu	37	chr1	155033231	155033231	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccttcttgcctttcctcAtgcatagggcagcccaatct	6	16	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155033231	G	G	155033231	1	3	49	0	1	0	0	0	0	0	0	0	237	232	8	5		5	ADAM15	1	155033231	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	717991	155033231	94217390	63	53076											
KIRREL	55243	broad.mit.edu	37	chr1	158016081	158016081	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtgagagggaaagatcaGtcaaagatgacattgaggct	15	4	2	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158016081	A	A	158016081	1	1	49	0	1	0	0	0	0	0	0	0	8395	1044	36	4		4	KIRREL	1	158016081	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2982850	158016081	91234540	64	53077											
KIRREL	55243	broad.mit.edu	37	chr1	158048855	158048855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgtctcactgggcctcTgcctctgttgtgctttctgt	10	12	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158048855	A	A	158048855	1	1	49	0	1	0	0	0	0	0	0	0	8395	1595	55	5		5	KIRREL	1	158048855	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	32774	158048855	91201766	65	53078											
CD1B	910	broad.mit.edu	37	chr1	158300375	158300375	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaaagtggaagacagtctGagagtaagagaagagtgcag	14	4	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158300375	T	T	158300375	1	4	49	0	1	0	0	0	0	0	0	0	3005	1305	45	3		3	CD1B	1	158300375	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	251520	158300375	90950246	66	53079											
OR6Y1	391112	broad.mit.edu	37	chr1	158517140	158517140	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggaatagaagagaattacGacggtcaggtgggaggcaca	15	5	1	2	rs114824139	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517140	T	T	158517140	2	4	49	1	0	0	0	0	0	0	0	1	11307	1045	37	3		3	OR6Y1	1	158517140	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	216765	158517140	90733481	67	53080											
SPTA1	6708	broad.mit.edu	37	chr1	158623138	158623138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtgggagcatcgggaaCtcatcgtgggccagtcttct	14	11	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158623138	A	A	158623138	3	1	49	1	0	0	0	0	1	0	0	0	15234	564	20	3	4269	3	SPTA1	1	158623138	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	105998	158623138	90627483	68	53081											
MNDA	4332	broad.mit.edu	37	chr1	158817774	158817774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttaggctttgggaacAccaggttcctcatgtattac	9	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158817774	T	T	158817774	1	4	49	0	1	0	0	0	0	0	0	0	9770	174	6	5		5	MNDA	1	158817774	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	194636	158817774	90432847	69	53082											
NCSTN	23385	broad.mit.edu	37	chr1	160319871	160319871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcccagtaaccagtcccCctattccccatccttccctt	4	19	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160319871	T	T	160319871	1	4	49	0	1	0	0	0	0	0	0	0	10336	638	22	4		4	NCSTN	1	160319871	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1502097	160319871	88930750	70	53083											
NDUFS2	4720	broad.mit.edu	37	chr1	161169574	161169574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacctcctcttttctaaCgtcccttctctccctcagga	5	17	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161169574	A	A	161169574	1	1	49	0	1	0	0	0	0	0	0	0	10387	551	19	3		3	NDUFS2	1	161169574	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	849703	161169574	88081047	71	53084											
FCGR2A	2212	broad.mit.edu	37	chr1	161480056	161480056	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagcttggagccctcacgtCccaggtaataggtagtcagg	13	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161480056	A	A	161480056	1	1	49	0	1	0	0	0	0	0	0	0	5838	870	30	3		3	FCGR2A	1	161480056	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	310482	161480056	87770565	72	53085											
C1orf226	400793	broad.mit.edu	37	chr1	162352897	162352897	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaagtgcagttggagttgGagaagcaagatggcaggtgg	18	3	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162352897	T	T	162352897	1	4	49	0	1	0	0	0	0	0	0	0	2054	1189	41	3		3	C1orf226	1	162352897	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	872841	162352897	86897724	73	53086											
DDR2	4921	broad.mit.edu	37	chr1	162637179	162637179	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagacccacacagatagactAtggcagaccccgtgtttccc	9	14	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162637179	C	C	162637179	1	2	49	0	1	0	0	0	0	0	0	0	4370	464	16	5		5	DDR2	1	162637179	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	284282	162637179	86613442	74	53087											
NUF2	83540	broad.mit.edu	37	chr1	163295725	163295725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaacactactatgaataGttcaactttggctcattttg	6	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163295725	T	T	163295725	1	4	49	0	1	0	0	0	0	0	0	0	10842	1044	36	3		3	NUF2	1	163295725	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	658546	163295725	85954896	75	53088											
MGST3	4259	broad.mit.edu	37	chr1	165623519	165623519	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcccttttttcttagcgtAtagcttctggcctgggcttg	10	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165623519	T	T	165623519	3	4	49	1	0	0	0	0	1	0	0	0	9655	449	16	5	267	5	MGST3	1	165623519	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2327794	165623519	83627102	76	53089											
ATP1B1	481	broad.mit.edu	37	chr1	169094246	169094246	+	RNA	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtacaaagattcagcccaGagggatgacatgatttttga	10	6	1	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169094246	T	T	169094246	1	4	49	0	1	0	0	0	0	0	0	0	1136	933	33	3		3	ATP1B1	1	169094246	RNA	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3470727	169094246	80156375	77	53090											
C1orf112	55732	broad.mit.edu	37	chr1	169772496	169772496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatggtatataatcaatgtGcataggggctgagtaaaata	11	3	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169772496	T	T	169772496	1	4	49	0	1	0	0	0	0	0	0	0	2005	1334	46	3		3	C1orf112	1	169772496	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	678250	169772496	79478125	78	53091											
SLC9A11	284525	broad.mit.edu	37	chr1	173517436	173517436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagttttgtgacatttaatTagcagaatcaggtctttaac	7	6	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173517436	A	A	173517436	1	1	49	0	1	0	0	0	0	0	0	0	14825	1769	61	5		5	SLC9A11	1	173517436	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3744940	173517436	75733185	79	53092											
TNN	63923	broad.mit.edu	37	chr1	175054751	175054751	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagacggggtggctcacgcCtgtaatcccagcactttggg	13	12	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175054751	T	T	175054751	1	4	49	0	1	0	0	0	0	0	0	0	16446	696	24	4		4	TNN	1	175054751	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1537315	175054751	74195870	80	53093											
TNR	7143	broad.mit.edu	37	chr1	175365585	175365585	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caataactattccaggcatcCctgaagaactaagaaaagac	6	10	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175365585	G	G	175365585	1	3	49	0	1	0	0	0	0	0	0	0	16461	638	22	4		4	TNR	1	175365585	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	310834	175365585	73885036	81	53094											
TNR	7143	broad.mit.edu	37	chr1	175372851	175372852	+	Intron	DNP	CA	AG	AG													ctctctactcattctctgacCagatttctgttgctgagagt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	175372852	AG	AG	175372851	1	1	49	0	1	0	0	0	0	0	0	0	16461	609	21	2		2	TNR	1	175372851	Intron	DNP	CA	TCGA-17-Z016-01A-01W-0746-08	7266	175372851	73877770	82	53095											
TNR	7143	broad.mit.edu	37	chr1	175652148	175652148	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccctggccagatattcccAgaaacaatgggcgagcttgg	11	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175652148	C	C	175652148	1	2	49	0	1	0	0	0	0	0	0	0	16461	203	7	5		5	TNR	1	175652148	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	279297	175652148	73598473	83	53096											
TNR	7143	broad.mit.edu	37	chr1	175674842	175674842	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatggatcccatgtgtcttGatttcagcaagacttttaaa	7	9	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175674842	C	C	175674842	1	2	49	0	1	0	0	0	0	0	0	0	16461	1305	45	4		4	TNR	1	175674842	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	22694	175674842	73575779	84	53097											
PAPPA2	60676	broad.mit.edu	37	chr1	176781402	176781402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtccttccctttttagCccagacttgcagataattta	5	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176781402	A	A	176781402	1	1	49	0	1	0	0	0	0	0	0	0	11527	754	26	3		3	PAPPA2	1	176781402	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1106560	176781402	72469219	85	53098											
ASTN1	460	broad.mit.edu	37	chr1	176845459	176845459	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatgggctccctgacttaatGactgtgtggagtaatgcaat	11	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176845459	C	C	176845459	1	2	49	0	1	0	0	0	0	0	0	0	1068	1305	45	4		4	ASTN1	1	176845459	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	64057	176845459	72405162	86	53099											
FAM5B	57795	broad.mit.edu	37	chr1	177226597	177226597	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggccagagcctcaaccatCtctaggtcagctgggccgac	12	14	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177226597	A	A	177226597	1	1	49	0	1	0	0	0	0	0	0	0	5644	928	32	3		3	FAM5B	1	177226597	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	381138	177226597	72024024	87	53100											
FAM163A	148753	broad.mit.edu	37	chr1	179730859	179730859	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggcaaaatgaatgtgggAgagaatgttgactggggtcg	17	3	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179730859	T	T	179730859	1	4	49	0	1	0	0	0	0	0	0	0	5522	319	11	5		5	FAM163A	1	179730859	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2504262	179730859	69519762	88	53101											
FAM163A	148753	broad.mit.edu	37	chr1	179731555	179731555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtgttcacctggttgcGctcctatgcacaaggctaga	12	10	1	2	rs141082017	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179731555	T	T	179731555	1	4	49	0	1	0	0	0	0	0	0	0	5522	1102	38	3		3	FAM163A	1	179731555	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	696	179731555	69519066	89	53102											
CACNA1E	777	broad.mit.edu	37	chr1	181670125	181670125	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggccttctccttggttccActtgaccgtcccaaagcata	8	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181670125	T	T	181670125	1	4	49	0	1	0	0	0	0	0	0	0	2568	174	6	5		5	CACNA1E	1	181670125	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1938570	181670125	67580496	90	53103											
CACNA1E	777	broad.mit.edu	37	chr1	181707583	181707583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaaacttctagagaaaaCctgggctcttgggtttagat	10	6	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181707583	A	A	181707583	1	1	49	0	1	0	0	0	0	0	0	0	2568	522	18	3		3	CACNA1E	1	181707583	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	37458	181707583	67543038	91	53104											
CACNA1E	777	broad.mit.edu	37	chr1	181708130	181708130	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactcagttatgtggagaaaGcctgctggacctaacctctc	10	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181708130	C	C	181708130	1	2	49	0	1	0	0	0	0	0	0	0	2568	986	34	4		4	CACNA1E	1	181708130	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	547	181708130	67542491	92	53105											
NPL	80896	broad.mit.edu	37	chr1	182785877	182785878	+	Missense_Mutation	DNP	GG	TC	TC													attaatttcctaaaggaagtGgctgctgccgcccctgccct							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	182785878	TC	TC	182785877	3	4	49	1	0	0	0	0	1	0	0	0	10680	1335	47	2	415	2	NPL	1	182785877	Missense_Mutation	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	1077747	182785877	66464744	93	53106											
LAMC1	3915	broad.mit.edu	37	chr1	183086517	183086517	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catctctcgagtggtcctctGagaggcaagatatcgccgtg	12	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183086517	T	T	183086517	4	4	49	1	0	0	0	0	0	1	0	0	8686	1291	45	3	1661	3	LAMC1	1	183086517	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	300640	183086517	66164104	94	53107											
LAMC2	3918	broad.mit.edu	37	chr1	183204723	183204723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcagccacgttgagtcaGccagtaacatggagcaactg	10	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183204723	T	T	183204723	3	4	49	1	0	0	0	0	1	0	0	0	8687	971	34	3	2376	3	LAMC2	1	183204723	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	118206	183204723	66045898	95	53108											
LAMC2	3918	broad.mit.edu	37	chr1	183209378	183209378	+	Intron	DEL	A	-	-													gagatccctttcaacttgccAaaatggaaaataccttttca							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	183209378	-	-	183209378	6	5	49	0	1	1	0	1	0	0	0	0	8687	145	5	0		0	LAMC2	1	183209378	Intron	DEL	A	TCGA-17-Z016-01A-01W-0746-08	4655	183209378	66041243	96	53109											
NMNAT2	23057	broad.mit.edu	37	chr1	183387385	183387385	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgagcaagataacgtgggtCttggtggtctcggtcatggt	16	7	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183387385	A	A	183387385	3	1	49	1	0	0	0	0	1	0	0	0	10594	912	32	3	1023	3	NMNAT2	1	183387385	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	178007	183387385	65863236	97	53110											
RGL1	23179	broad.mit.edu	37	chr1	183661410	183661410	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccattcctaagtcttgggGccgaaggctggaggttggcc	16	10	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183661410	A	A	183661410	1	1	49	0	1	0	0	0	0	0	0	0	13384	1218	42	4		4	RGL1	1	183661410	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	274025	183661410	65589211	98	53111											
HMCN1	83872	broad.mit.edu	37	chr1	186086595	186086595	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgttgttgttttagttccAccttccatagctgatgagcc	9	9	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186086595	T	T	186086595	2	4	49	1	0	0	0	0	0	0	0	1	7287	146	6	5		5	HMCN1	1	186086595	Silent	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2425185	186086595	63164026	99	53112											
PRG4	10216	broad.mit.edu	37	chr1	186280450	186280450	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcaacagtttgataacagTaatggtcaaaattcaaccgt	6	7	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186280450	A	A	186280450	1	1	49	0	1	0	0	0	0	0	0	0	12587	1653	57	5		5	PRG4	1	186280450	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	193855	186280450	62970171	100	53113											
FAM5C	339479	broad.mit.edu	37	chr1	190067133	190067133	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcaagattttgggttgtGcttgacatttatggttaact	9	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067133	T	T	190067133	1	4	49	0	1	0	0	0	0	0	0	0	5645	1334	46	3		3	FAM5C	1	190067133	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3786683	190067133	59183488	101	53114											
FAM5C	339479	broad.mit.edu	37	chr1	190250805	190250805	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttgcggaagaattcaggGgcaagaggcagaggagagcc	17	6	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190250805	T	T	190250805	2	4	49	1	0	0	0	0	0	0	0	1	5645	1219	43	2		2	FAM5C	1	190250805	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	183672	190250805	58999816	102	53115											
FAM5C	339479	broad.mit.edu	37	chr1	190336128	190336128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaggtacacaggtacacGgtgcaagctgtcagtggagc	13	9	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190336128	T	T	190336128	1	4	49	0	1	0	0	0	0	0	0	0	5645	1131	39	1		1	FAM5C	1	190336128	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	85323	190336128	58914493	103	53116											
RGS18	64407	broad.mit.edu	37	chr1	192127942	192127942	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaaagcataattgaggttGaagattcattacctcttgtt	7	5	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192127942	T	T	192127942	1	4	49	0	1	0	0	0	0	0	0	0	13409	1305	45	3		3	RGS18	1	192127942	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1791814	192127942	57122679	104	53117											
RGS21	431704	broad.mit.edu	37	chr1	192307679	192307679	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcctttgctgtgacctgtGcaagagaccatcttaacaaa	7	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192307679	C	C	192307679	1	2	49	0	1	0	0	0	0	0	0	0	13413	1334	46	4		4	RGS21	1	192307679	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	179737	192307679	56942942	105	53118											
ASPM	259266	broad.mit.edu	37	chr1	197053895	197053895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgttctcagcaacagcaaCatctatgtggccaaaaagcc	7	13	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197053895	A	A	197053895	1	1	49	0	1	0	0	0	0	0	0	0	1060	493	17	3		3	ASPM	1	197053895	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4746216	197053895	52196726	106	53119											
CRB1	23418	broad.mit.edu	37	chr1	197396501	197396501	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgaaatgtataAttttcgtcttccatcccttc	8	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197396501	C	C	197396501	1	2	49	0	1	0	0	0	0	0	0	0	3880	116	4	5		5	CRB1	1	197396501	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	342606	197396501	51854120	107	53120											
NEK7	140609	broad.mit.edu	37	chr1	198225544	198225544	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaagggatctgagagcctAcagtatatggcaacattaac	9	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198225544	T	T	198225544	1	4	49	0	1	0	0	0	0	0	0	0	10424	406	14	5		5	NEK7	1	198225544	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	829043	198225544	51025077	108	53121											
DDX59	83479	broad.mit.edu	37	chr1	200635398	200635398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattcagtggagactctggCtcagaatcagccttctgtgg	12	10	5	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200635398	A	A	200635398	3	1	49	1	0	0	0	0	1	0	0	0	4409	796	28	3	1416	3	DDX59	1	200635398	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2409854	200635398	48615223	109	53122											
CACNA1S	779	broad.mit.edu	37	chr1	201054058	201054058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggttgggggttcctggGgcagtgggcagatactcaca	19	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201054058	T	T	201054058	1	4	49	0	1	0	0	0	0	0	0	0	2573	1247	43	2		2	CACNA1S	1	201054058	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	418660	201054058	48196563	110	53123											
UBE2T	29089	broad.mit.edu	37	chr1	202300911	202300911	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaattcaaggtaggcaactTagatcaccttggcaaagaac	8	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202300911	A	A	202300911	1	1	49	0	1	0	0	0	0	0	0	0	16999	1769	61	5		5	UBE2T	1	202300911	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1246853	202300911	46949710	111	53124											
LRRN2	10446	broad.mit.edu	37	chr1	204588041	204588041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagacctacctcctgcagGttgggcagggactccaccgt	13	13	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204588041	T	T	204588041	3	4	49	1	0	0	0	0	1	0	0	0	9122	1252	44	3	1065	3	LRRN2	1	204588041	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2287130	204588041	44662580	112	53125											
ELK4	2005	broad.mit.edu	37	chr1	205595140	205595140	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccagaagcgaattcatctCcgagctgaggatgccttgtt	10	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205595140	A	A	205595140	1	1	49	0	1	0	0	0	0	0	0	0	5103	870	30	3		3	ELK4	1	205595140	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1007099	205595140	43655481	113	53126											
PIGR	5284	broad.mit.edu	37	chr1	207109005	207109005	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggccttaacccacccctCgctgtccaccagcagggggc	11	18	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207109005	A	A	207109005	4	1	49	1	0	0	0	0	0	1	0	0	11992	893	31	3	1118	3	PIGR	1	207109005	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1513865	207109005	42141616	114	53127											
HHAT	55733	broad.mit.edu	37	chr1	210733205	210733205	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacagtgtatcagactctAttatctgagaaattatggca	8	6	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210733205	G	G	210733205	1	3	49	0	1	0	0	0	0	0	0	0	7156	464	16	5		5	HHAT	1	210733205	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3624200	210733205	38517416	115	53128											
DTL	51514	broad.mit.edu	37	chr1	212229242	212229242	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttcatcaccagtggtgcCtgagcactcctcctagagtc	9	14	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212229242	T	T	212229242	1	4	49	0	1	0	0	0	0	0	0	0	4827	696	24	4		4	DTL	1	212229242	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1496037	212229242	37021379	116	53129											
CENPF	1063	broad.mit.edu	37	chr1	214828563	214828563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaattcaaggttttaaatGgaattacttttattttgtag	7	2	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214828563	T	T	214828563	1	4	49	0	1	0	0	0	0	0	0	0	3261	1363	47	2		2	CENPF	1	214828563	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2599321	214828563	34422058	117	53130											
KCTD3	51133	broad.mit.edu	37	chr1	215793797	215793797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaggaggatttgaaggggGaggattccttggaagaaaga	17	2	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215793797	T	T	215793797	3	4	49	1	0	0	0	0	1	0	0	0	8180	1174	41	3	2355	3	KCTD3	1	215793797	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	965234	215793797	33456824	118	53131											
USH2A	7399	broad.mit.edu	37	chr1	216270756	216270756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtacttggaatcttatGcccacattcctgctaatcaa	5	11	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216270756	T	T	216270756	1	4	49	0	1	0	0	0	0	0	0	0	17162	1334	46	3		3	USH2A	1	216270756	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	476959	216270756	32979865	119	53132											
USH2A	7399	broad.mit.edu	37	chr1	216517893	216517893	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatctggacctctttctggtAacatctttctggtgaaccat	8	10	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216517893	C	C	216517893	1	2	49	0	1	0	0	0	0	0	0	0	17162	377	13	5		5	USH2A	1	216517893	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	247137	216517893	32732728	120	53133											
USH2A	7399	broad.mit.edu	37	chr1	216544417	216544417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgcctctgcagattttGggaacgcctttctctctgaa	8	11	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216544417	T	T	216544417	1	4	49	0	1	0	0	0	0	0	0	0	17162	1363	47	2		2	USH2A	1	216544417	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	26524	216544417	32706204	121	53134											
ESRRG	2104	broad.mit.edu	37	chr1	216944426	216944426	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgggctcaagggatcctCctgctccagcctcccaagta	9	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216944426	A	A	216944426	1	1	49	0	1	0	0	0	0	0	0	0	5304	870	30	3		3	ESRRG	1	216944426	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	400009	216944426	32306195	122	53135											
SPATA17	128153	broad.mit.edu	37	chr1	217822389	217822389	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtaatttattcatgaAgtactcatttcaaataattt	3	4	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217822389	G	G	217822389	1	3	49	0	1	0	0	0	0	0	0	0	15118	87	3	5		5	SPATA17	1	217822389	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	877963	217822389	31428232	123	53136											
SLC30A10	55532	broad.mit.edu	37	chr1	220089058	220089058	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgagttgcagagcaaCagtaagtccttctgctccag	12	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220089058	G	G	220089058	2	3	49	1	0	0	0	0	0	0	0	1	14668	465	17	4		4	SLC30A10	1	220089058	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2266669	220089058	29161563	124	53137											
MARK1	4139	broad.mit.edu	37	chr1	220773256	220773256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgagacatacagaaatGttaacacctaagagttcatt	7	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220773256	T	T	220773256	1	4	49	0	1	0	0	0	0	0	0	0	9404	1392	48	3		3	MARK1	1	220773256	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	684198	220773256	28477365	125	53138											
MARK1	4139	broad.mit.edu	37	chr1	220801442	220801442	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgcttgtcacagtggaaaGatgtcttttgttgaagactt	10	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220801442	T	T	220801442	1	4	49	0	1	0	0	0	0	0	0	0	9404	957	33	3		3	MARK1	1	220801442	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	28186	220801442	28449179	126	53139											
MOSC2	54996	broad.mit.edu	37	chr1	220935100	220935100	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtatagattggttcaatttGagacaaacatgaagggaaga	11	4	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220935100	T	T	220935100	4	4	49	1	0	0	0	0	0	1	0	0	9808	1291	45	3	557	3	MOSC2	1	220935100	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	133658	220935100	28315521	127	53140											
MOSC2	54996	broad.mit.edu	37	chr1	220948265	220948265	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtggatatagccatgcAattgtgtgtctatatagacc	10	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220948265	T	T	220948265	1	4	49	0	1	0	0	0	0	0	0	0	9808	145	5	5		5	MOSC2	1	220948265	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	13165	220948265	28302356	128	53141											
CNIH3	149111	broad.mit.edu	37	chr1	224804788	224804789	+	5'UTR	DNP	GG	TA	TA													ggagaggagcgtgcagacgcGgctccttggagggagtgcgg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	224804789	TA	TA	224804788	1	4	49	0	1	0	0	0	0	0	0	0	3636	1131	39	1		1	CNIH3	1	224804788	5'UTR	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	3856523	224804788	24445833	129	53142											
CNIH3	149111	broad.mit.edu	37	chr1	224927219	224927219	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaatcacgcagcagctGggagccgagttaaccctgcg	14	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224927219	T	T	224927219	1	4	49	0	1	0	0	0	0	0	0	0	3636	1363	47	2		2	CNIH3	1	224927219	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	122431	224927219	24323402	130	53143											
SNAP47	116841	broad.mit.edu	37	chr1	227929582	227929582	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagttggaaaagggtggctAcaagtttctcttcttgcttc	11	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227929582	G	G	227929582	1	3	49	0	1	0	0	0	0	0	0	0	14946	406	14	5		5	SNAP47	1	227929582	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3002363	227929582	21321039	131	53144											
RYR2	6262	broad.mit.edu	37	chr1	237661786	237661786	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctattaccccctctctccctAgctcctagtattgctctgca	4	17	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237661786	T	T	237661786	1	4	49	0	1	0	0	0	0	0	0	0	13880	435	15	5		5	RYR2	1	237661786	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	9732204	237661786	11588835	132	53145											
RYR2	6262	broad.mit.edu	37	chr1	237935269	237935269	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttagaatgactcaacttgAacttctgagcaagcattaat	6	8	3	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237935269	G	G	237935269	1	3	49	0	1	0	0	0	0	0	0	0	13880	261	9	5		5	RYR2	1	237935269	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	273483	237935269	11315352	133	53146											
RYR2	6262	broad.mit.edu	37	chr1	237961262	237961262	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaagtataaaaataattaGatgttttatacacacatata	4	3	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237961262	C	C	237961262	1	2	49	0	1	0	0	0	0	0	0	0	13880	957	33	4		4	RYR2	1	237961262	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	25993	237961262	11289359	134	53147											
RYR2	6262	broad.mit.edu	37	chr1	237982714	237982714	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgttattttgtcttctttCaaataacataatggaaaagg	7	4	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237982714	G	G	237982714	1	3	49	0	1	0	0	0	0	0	0	0	13880	841	29	4		4	RYR2	1	237982714	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	21452	237982714	11267907	135	53148											
ZP4	57829	broad.mit.edu	37	chr1	238048421	238048421	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaacagttgtaagttgggGaggttcagagccctggtgag	17	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048421	T	T	238048421	1	4	49	0	1	0	0	0	0	0	0	0	18347	1189	41	3		3	ZP4	1	238048421	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	65707	238048421	11202200	136	53149											
CHRM3	1131	broad.mit.edu	37	chr1	239591110	239591110	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaaaaggattagatgaggGagtggttttgctgaaagaaa	13	4	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239591110	T	T	239591110	1	4	49	0	1	0	0	0	0	0	0	0	3409	1189	41	3		3	CHRM3	1	239591110	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1542689	239591110	9659511	137	53150											
FMN2	56776	broad.mit.edu	37	chr1	240334552	240334552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaacaaagcctttgaactGttgcattctggaaaaagcat	7	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240334552	T	T	240334552	1	4	49	0	1	0	0	0	0	0	0	0	6008	1392	48	3		3	FMN2	1	240334552	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	743442	240334552	8916069	138	53151											
FMN2	56776	broad.mit.edu	37	chr1	240494070	240494070	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaagtattttgcatgagtgGacgtaagcacattgaggagt	13	4	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240494070	T	T	240494070	1	4	49	0	1	0	0	0	0	0	0	0	6008	1189	41	3		3	FMN2	1	240494070	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	159518	240494070	8756551	139	53152											
RGS7	6000	broad.mit.edu	37	chr1	241319374	241319374	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagagttcctaaatttacacAcgcacgcacacacacacaca	4	14	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241319374	T	T	241319374	1	4	49	0	1	0	0	0	0	0	0	0	13419	174	6	5		5	RGS7	1	241319374	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	825304	241319374	7931247	140	53153											
SDCCAG8	10806	broad.mit.edu	37	chr1	243507640	243507640	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattaaagatcaggtaagaGaggacacagcataattgcag	10	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243507640	C	C	243507640	1	2	49	0	1	0	0	0	0	0	0	0	14072	957	33	4		4	SDCCAG8	1	243507640	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2188266	243507640	5742981	141	53154											
KIF26B	55083	broad.mit.edu	37	chr1	245849625	245849626	+	Frame_Shift_Del	DEL	GC	-	-													cgagcaaggattccggcgtgGcgtctagggagtccttgctg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	245849626	-	-	245849625	7	5	49	1	0	1	0	1	0	0	0	0	8365	1203	42	0	3386	0	KIF26B	1	245849625	Frame_Shift_Del	DEL	GC	TCGA-17-Z016-01A-01W-0746-08	2341985	245849625	3400996	142	53155											
SMYD3	64754	broad.mit.edu	37	chr1	246594925	246594925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcagtcccagctactcGggggaggctgaggcagcaga	16	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246594925	T	T	246594925	1	4	49	0	1	0	0	0	0	0	0	0	14937	1131	39	1		1	SMYD3	1	246594925	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	745300	246594925	2655696	143	53156											
AHCTF1	25909	broad.mit.edu	37	chr1	247031132	247031132	+	Intron	DEL	T	-	-													aactgtaaaatgaagaacgcTggaattaagtgcatctctaa							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247031132	-	-	247031132	6	5	49	0	1	1	0	1	0	0	0	0	408	1595	55	0		0	AHCTF1	1	247031132	Intron	DEL	T	TCGA-17-Z016-01A-01W-0746-08	436207	247031132	2219489	144	53157											
NLRP3	114548	broad.mit.edu	37	chr1	247594710	247594710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctccctctccggctcaaCacactcaccttgtcaccagt	4	19	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247594710	A	A	247594710	1	1	49	0	1	0	0	0	0	0	0	0	10573	493	17	3		3	NLRP3	1	247594710	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	563578	247594710	1655911	145	53158											
NLRP3	114548	broad.mit.edu	37	chr1	247599354	247599354	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccattccctgaccagactcTatgtgggggagaatgccttg	12	11	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247599354	C	C	247599354	3	2	49	1	0	0	0	0	1	0	0	0	10573	1522	53	5	2603	5	NLRP3	1	247599354	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	4644	247599354	1651267	146	53159											
OR2L13	284521	broad.mit.edu	37	chr1	248220307	248220307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgtggtctgagagactGtttgttatgatttcagttct	12	5	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248220307	T	T	248220307	1	4	49	0	1	0	0	0	0	0	0	0	11100	1392	48	3		3	OR2L13	1	248220307	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	620953	248220307	1030314	147	53160											
OR2L13	284521	broad.mit.edu	37	chr1	248225879	248225879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagagggtgggaagggtaCaggggagggacgataaagtg	20	4	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248225879	A	A	248225879	1	1	49	0	1	0	0	0	0	0	0	0	11100	493	17	3		3	OR2L13	1	248225879	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5572	248225879	1024742	148	53161											
OR2M2	391194	broad.mit.edu	37	chr1	248343503	248343503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccctcatggacctcatGctcatctgcaccaccgtacc	6	18	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343503	T	T	248343503	3	4	49	1	0	0	0	0	1	0	0	0	11104	1319	46	3	218	3	OR2M2	1	248343503	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	117624	248343503	907118	149	53162											
OR2M4	26245	broad.mit.edu	37	chr1	248402846	248402846	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcatttgttgtgtggtaAtgctaatctttccagtttca	8	6	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248402846	T	T	248402846	3	4	49	1	0	0	0	0	1	0	0	0	11106	101	4	5	618	5	OR2M4	1	248402846	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	59343	248402846	847775	150	53163											
OR14C36	127066	broad.mit.edu	37	chr1	248512712	248512712	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcggctgtttcatctttatCatcaggtcttacattcacat	7	10	6	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248512712	A	A	248512712	2	1	49	1	0	0	0	0	0	0	0	1	11040	816	29	3		3	OR14C36	1	248512712	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	109866	248512712	737909	151	53164											
SNTG2	54221	broad.mit.edu	37	chr2	1285284	1285284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtgtttatgtggtgtGttgtgtggtgtgtgtgtttg	19	0	0	0	rs113659235		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1285284	A	A	1285284	1	1	49	0	1	0	0	0	0	0	0	0	14989	1392	48	4		4	SNTG2	2	1285284	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08		1285284	241914089	152	53165											
NT5C1B	93034	broad.mit.edu	37	chr2	18745158	18745158	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtcatcaaagaagatgtgGggccggatcttcaccaagat	12	8	4	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18745158	C	C	18745158	2	2	49	1	0	0	0	0	0	0	0	1	10781	1219	43	4		4	NT5C1B	2	18745158	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	17459874	18745158	224454215	153	53166											
APOB	338	broad.mit.edu	37	chr2	21225226	21225226	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaattcattgaacttatgAagattaaggcataggttttc	7	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21225226	C	C	21225226	2	2	49	1	0	0	0	0	0	0	0	1	787	233	9	5		5	APOB	2	21225226	Silent	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2480068	21225226	221974147	154	53167											
APOB	338	broad.mit.edu	37	chr2	21234284	21234284	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccagccacatgcagcttcAggggttctagccgtagtttc	10	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21234284	T	T	21234284	3	4	49	1	0	0	0	0	1	0	0	0	787	188	7	5	8251	5	APOB	2	21234284	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	9058	21234284	221965089	155	53168											
APOB	338	broad.mit.edu	37	chr2	21250944	21250944	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaactttttcagactagatAagaagaagtatattttgagc	7	5	1	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21250944	T	T	21250944	1	4	49	0	1	0	0	0	0	0	0	0	787	377	13	5		5	APOB	2	21250944	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	16660	21250944	221948429	156	53169											
GTF3C2	2976	broad.mit.edu	37	chr2	27565996	27565996	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctaggctttgagacctttGacatctctgaagaaagatct	8	10	2	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27565996	T	T	27565996	4	4	49	1	0	0	0	0	0	1	0	0	6938	1294	45	3	2537	3	GTF3C2	2	27565996	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6315052	27565996	215633377	157	53170											
IFT172	26160	broad.mit.edu	37	chr2	27679321	27679321	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatacatcaattttctttcTctagatagtggctctggctg	7	8	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27679321	A	A	27679321	1	1	49	0	1	0	0	0	0	0	0	0	7627	1566	54	5		5	IFT172	2	27679321	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	113325	27679321	215520052	158	53171											
FAM179A	165186	broad.mit.edu	37	chr2	29222072	29222072	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcctgagccaagagcCctgctgaacaacgaggaacc	10	15	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29222072	T	T	29222072	2	4	49	1	0	0	0	0	0	0	0	1	5550	610	22	4		4	FAM179A	2	29222072	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1542751	29222072	213977301	159	53172											
ALK	238	broad.mit.edu	37	chr2	29419880	29419880	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccccctgctgattggtcaAggaagagtgcgcaggtgtaa	14	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29419880	T	T	29419880	1	4	49	0	1	0	0	0	0	0	0	0	525	87	3	5		5	ALK	2	29419880	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	197808	29419880	213779493	160	53173											
ALK	238	broad.mit.edu	37	chr2	29575294	29575294	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgccctgtgtaggccacgGcttgaggccctccccaacct	11	16	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29575294	A	A	29575294	1	1	49	0	1	0	0	0	0	0	0	0	525	1218	42	4		4	ALK	2	29575294	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	155414	29575294	213624079	161	53174											
ALK	238	broad.mit.edu	37	chr2	30064751	30064751	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttgacccttatgcctttGacctacctcatcctccactc	3	18	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30064751	T	T	30064751	1	4	49	0	1	0	0	0	0	0	0	0	525	1305	45	3		3	ALK	2	30064751	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	489457	30064751	213134622	162	53175											
GALNT14	79623	broad.mit.edu	37	chr2	31307387	31307387	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagactttagtgccctgaggTgatgctcagcttgcctgggc	13	10	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31307387	G	G	31307387	1	3	49	0	1	0	0	0	0	0	0	0	6274	1711	59	5		5	GALNT14	2	31307387	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1242636	31307387	211891986	163	53176											
XDH	7498	broad.mit.edu	37	chr2	31620329	31620329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcactggcagaaagtccCatgctattcataagaaccct	6	13	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31620329	A	A	31620329	1	1	49	0	1	0	0	0	0	0	0	0	17553	609	21	2		2	XDH	2	31620329	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	312942	31620329	211579044	164	53177											
NLRC4	58484	broad.mit.edu	37	chr2	32477419	32477419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcagaggctctgccatGgggaagatggatctttgttg	14	6	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32477419	T	T	32477419	1	4	49	0	1	0	0	0	0	0	0	0	10564	1363	47	2		2	NLRC4	2	32477419	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	857090	32477419	210721954	165	53178											
BIRC6	57448	broad.mit.edu	37	chr2	32730165	32730166	+	Missense_Mutation	DNP	CC	TT	TT													agctcgctctgctgcttggtCctacatctttcttccagagg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32730166	TT	TT	32730165	3	4	49	1	0	0	0	0	1	0	0	0	1444	855	30	4	9791	4	BIRC6	2	32730165	Missense_Mutation	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	252746	32730165	210469208	166	53179											
SLC8A1	6546	broad.mit.edu	37	chr2	40656261	40656261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgctgacagccttccttGcttggtcagctgcatgcctc	10	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40656261	T	T	40656261	3	4	49	1	0	0	0	0	1	0	0	0	14820	1319	46	3	1909	3	SLC8A1	2	40656261	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	7926096	40656261	202543112	167	53180											
PLEKHH2	130271	broad.mit.edu	37	chr2	43908223	43908223	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatctactgttccactatttGaatgccaaccaactccagaa	4	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43908223	T	T	43908223	1	4	49	0	1	0	0	0	0	0	0	0	12172	1305	45	3		3	PLEKHH2	2	43908223	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3251962	43908223	199291150	168	53181											
FSHR	2492	broad.mit.edu	37	chr2	49218860	49218860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagggtttttagaggcaCatacgaattattggacgcat	13	5	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49218860	T	T	49218860	1	4	49	0	1	0	0	0	0	0	0	0	6133	493	17	4		4	FSHR	2	49218860	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5310637	49218860	193980513	169	53182											
NRXN1	9378	broad.mit.edu	37	chr2	50880393	50880393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagggcagcagtctggacCaaaaatggttcagaatgctc	11	8	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50880393	A	A	50880393	1	1	49	0	1	0	0	0	0	0	0	0	10760	609	21	2		2	NRXN1	2	50880393	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1661533	50880393	192318980	170	53183											
CCDC85A	114800	broad.mit.edu	37	chr2	56496520	56496520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaggaaaagttggagtGgaaggaagcaatcttaatgg	16	2	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56496520	T	T	56496520	1	4	49	0	1	0	0	0	0	0	0	0	2887	1363	47	2		2	CCDC85A	2	56496520	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5616127	56496520	186702853	171	53184											
ARHGAP25	9938	broad.mit.edu	37	chr2	69033507	69033507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attattttaaatgccacagtGgtttagtgagatgaaacatc	8	5	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69033507	T	T	69033507	1	4	49	0	1	0	0	0	0	0	0	0	876	1363	47	2		2	ARHGAP25	2	69033507	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	12536987	69033507	174165866	172	53185											
CD207	50489	broad.mit.edu	37	chr2	71058894	71058894	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccagtccccttccatcccTgctttagtcaggccaatcca	6	17	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71058894	A	A	71058894	2	1	49	1	0	0	0	0	0	0	0	1	3013	1567	55	5		5	CD207	2	71058894	Silent	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2025387	71058894	172140479	173	53186											
CD207	50489	broad.mit.edu	37	chr2	71062642	71062642	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggacggcctgcagcaggAcggaggcgaccaggaccagc	16	12	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71062642	T	T	71062642	3	4	49	1	0	0	0	0	1	0	0	0	3013	275	10	5	836	5	CD207	2	71062642	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3748	71062642	172136731	174	53187											
DYSF	8291	broad.mit.edu	37	chr2	71912342	71912342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtactgtggggggcctGgtcagagctcctccctgtct	15	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71912342	T	T	71912342	1	4	49	0	1	0	0	0	0	0	0	0	4899	1363	47	2		2	DYSF	2	71912342	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	849700	71912342	171287031	175	53188											
RTKN	6242	broad.mit.edu	37	chr2	74659500	74659500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcatggggaagtcatcttTaaggtggtccacatgccaca	10	10	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74659500	C	C	74659500	1	2	49	0	1	0	0	0	0	0	0	0	13833	1769	61	5		5	RTKN	2	74659500	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2747158	74659500	168539873	176	53189											
SEMA4F	10505	broad.mit.edu	37	chr2	74906263	74906263	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggggaaaaatttggtgatGaggagaaacttgactgataa	13	2	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74906263	T	T	74906263	1	4	49	0	1	0	0	0	0	0	0	0	14148	1305	45	3		3	SEMA4F	2	74906263	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	246763	74906263	168293110	177	53190											
LRRTM4	80059	broad.mit.edu	37	chr2	77392422	77392422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgaatagaccaataaccGgctctgaaattgaggcaata	8	11	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77392422	T	T	77392422	1	4	49	0	1	0	0	0	0	0	0	0	9129	1131	39	1		1	LRRTM4	2	77392422	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2486159	77392422	165806951	178	53191											
LRRTM4	80059	broad.mit.edu	37	chr2	77715147	77715147	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgatgaatggtgggtctGaaataagtgtaacaaaaacg	11	5	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77715147	C	C	77715147	1	2	49	0	1	0	0	0	0	0	0	0	9129	1305	45	4		4	LRRTM4	2	77715147	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	322725	77715147	165484226	179	53192											
REG3G	130120	broad.mit.edu	37	chr2	79253249	79253249	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatggccctgcccagtgtGtcctggatgctgctttcctg	11	15	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79253249	A	A	79253249	2	1	49	1	0	0	0	0	0	0	0	1	13321	1364	48	4		4	REG3G	2	79253249	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1538102	79253249	163946124	180	53193											
REG1B	5968	broad.mit.edu	37	chr2	79312458	79312458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggatcagaaggagtgtaGcccctcctcaacctaggact	11	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79312458	T	T	79312458	1	4	49	0	1	0	0	0	0	0	0	0	13319	986	34	3		3	REG1B	2	79312458	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	59209	79312458	163886915	181	53194											
REG1B	5968	broad.mit.edu	37	chr2	79314141	79314141	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattaggggcttcttggtgtCctttataagaacatatggat	10	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79314141	T	T	79314141	1	4	49	0	1	0	0	0	0	0	0	0	13319	870	30	4		4	REG1B	2	79314141	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1683	79314141	163885232	182	53195											
CTNNA2	1496	broad.mit.edu	37	chr2	79610610	79610610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtagaaactagaataccCatgctgttagagggctttgg	12	6	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79610610	A	A	79610610	1	1	49	0	1	0	0	0	0	0	0	0	4047	609	21	2		2	CTNNA2	2	79610610	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	296469	79610610	163588763	183	53196											
CTNNA2	1496	broad.mit.edu	37	chr2	79786804	79786804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactttggatggacagagaGtacgtggaagtaggttgaac	15	5	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79786804	T	T	79786804	1	4	49	0	1	0	0	0	0	0	0	0	4047	1044	36	3		3	CTNNA2	2	79786804	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	176194	79786804	163412569	184	53197											
CTNNA2	1496	broad.mit.edu	37	chr2	80700010	80700010	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccagttattgtcattacAcgtgtcaaagggctaggaga	10	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80700010	T	T	80700010	1	4	49	0	1	0	0	0	0	0	0	0	4047	174	6	5		5	CTNNA2	2	80700010	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	913206	80700010	162499363	185	53198											
DNAH6	1768	broad.mit.edu	37	chr2	84779972	84779972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacttcagtttacatgtccCttgtttttttattttgtttt	4	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84779972	T	T	84779972	1	4	49	0	1	0	0	0	0	0	0	0	4645	696	24	4		4	DNAH6	2	84779972	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4079962	84779972	158419401	186	53199											
RMND5A	64795	broad.mit.edu	37	chr2	87998075	87998075	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaatgcttgtgatttttgTacattgattttgtatcctga	9	4	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87998075	C	C	87998075	1	2	49	0	1	0	0	0	0	0	0	0	13508	1653	57	5		5	RMND5A	2	87998075	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3218103	87998075	155201298	187	53200											
RPIA	22934	broad.mit.edu	37	chr2	89003403	89003403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgcttttaacagcaccCaagtcacctctcgaatgctt	6	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89003403	T	T	89003403	1	4	49	0	1	0	0	0	0	0	0	0	13664	609	21	4		4	RPIA	2	89003403	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1005328	89003403	154195970	188	53201											
STARD7	56910	broad.mit.edu	37	chr2	96859182	96859182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggtctctgatccaagaaTcttattacaaggagagagta	9	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96859182	C	C	96859182	1	2	49	0	1	0	0	0	0	0	0	0	15380	1450	50	5		5	STARD7	2	96859182	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	7855779	96859182	146340191	189	53202											
INPP4A	3631	broad.mit.edu	37	chr2	99180085	99180085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagtaccgccgtgacgtGgtcttctgccagacggtagg	14	12	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99180085	T	T	99180085	2	4	49	1	0	0	0	0	0	0	0	1	7822	1335	47	2		2	INPP4A	2	99180085	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2320903	99180085	144019288	190	53203											
TBC1D8	11138	broad.mit.edu	37	chr2	101706459	101706459	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaaaggagaggagaggAgaagaaggggagaggaagga	22	1	0	6			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101706459	T	T	101706459	1	4	49	0	1	0	0	0	0	0	0	0	15747	319	11	5		5	TBC1D8	2	101706459	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2526374	101706459	141492914	191	53204											
UXS1	80146	broad.mit.edu	37	chr2	106721105	106721105	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaacagcaagttttcccatCataaaattaaaaatttttaa	3	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106721105	A	A	106721105	1	1	49	0	1	0	0	0	0	0	0	0	17236	841	29	3		3	UXS1	2	106721105	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5014646	106721105	136478268	192	53205											
IL1F9	56300	broad.mit.edu	37	chr2	113736326	113736326	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaggccctctgcactcacGctatctcctgtggaagcccc	8	17	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113736326	A	A	113736326	1	1	49	0	1	0	0	0	0	0	0	0	7727	1102	38	4		4	IL1F9	2	113736326	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	7015221	113736326	129463047	193	53206											
DPP10	57628	broad.mit.edu	37	chr2	115200335	115200335	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactccgcctgggattgtgCactgtccagggtcctgaaac	12	12	0	1	rs140156848	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115200335	T	T	115200335	1	4	49	0	1	0	0	0	0	0	0	0	4767	725	25	4		4	DPP10	2	115200335	5'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1464009	115200335	127999038	194	53207											
DPP10	57628	broad.mit.edu	37	chr2	116390681	116390681	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatccaaaggattataaatCatgctgctataaagacacat	5	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116390681	T	T	116390681	1	4	49	0	1	0	0	0	0	0	0	0	4767	841	29	4		4	DPP10	2	116390681	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1190346	116390681	126808692	195	53208											
DPP10	57628	broad.mit.edu	37	chr2	116572433	116572433	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgactgggattccgtactcAttgacatggataatgtcatt	9	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116572433	T	T	116572433	3	4	49	1	0	0	0	0	1	0	0	0	4767	217	8	5	2014	5	DPP10	2	116572433	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	181752	116572433	126626940	196	53209											
CCDC93	54520	broad.mit.edu	37	chr2	118696482	118696482	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatgccagcacttagcataTaaaataggcactctttctgc	7	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118696482	C	C	118696482	1	2	49	0	1	0	0	0	0	0	0	0	2900	1421	49	5		5	CCDC93	2	118696482	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2124049	118696482	124502891	197	53210											
RALB	5899	broad.mit.edu	37	chr2	121047414	121047414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatctgctgggttttagGgaaccatttatgaaaactag	9	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121047414	T	T	121047414	1	4	49	0	1	0	0	0	0	0	0	0	13119	1247	43	2		2	RALB	2	121047414	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2350932	121047414	122151959	198	53211											
GLI2	2736	broad.mit.edu	37	chr2	121730161	121730161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgtgctgtgtgcacacCtgtctccctgtctgcactct	10	14	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121730161	A	A	121730161	1	1	49	0	1	0	0	0	0	0	0	0	6502	696	24	2		2	GLI2	2	121730161	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	682747	121730161	121469212	199	53212											
CNTNAP5	129684	broad.mit.edu	37	chr2	124791175	124791175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagtctttgagattccaGtgctgccttgctaaacaaca	8	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124791175	T	T	124791175	1	4	49	0	1	0	0	0	0	0	0	0	3682	1044	36	3		3	CNTNAP5	2	124791175	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3061014	124791175	118408198	200	53213											
CNTNAP5	129684	broad.mit.edu	37	chr2	124999733	124999733	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaaattgtagctatgtgaGacattactacaactctctct	6	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124999733	T	T	124999733	1	4	49	0	1	0	0	0	0	0	0	0	3682	957	33	3		3	CNTNAP5	2	124999733	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	208558	124999733	118199640	201	53214											
POLR2D	5433	broad.mit.edu	37	chr2	128605739	128605739	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatctgctgcagctcctcaTcttcaaaccgtccctccaag	6	16	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128605739	C	C	128605739	3	2	49	1	0	0	0	0	1	0	0	0	12312	1435	50	5	61	5	POLR2D	2	128605739	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3606006	128605739	114593634	202	53215											
CCDC74B	91409	broad.mit.edu	37	chr2	130898725	130898725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccccaggaacacccaagCcttacctggcctgcccttgt	8	18	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130898725	A	A	130898725	1	1	49	0	1	0	0	0	0	0	0	0	2876	754	26	3		3	CCDC74B	2	130898725	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2292986	130898725	112300648	203	53216											
LOC150786	150786	broad.mit.edu	37	chr2	132120476	132120476	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatagtttggctttttgtAaaatataaataatgaagacg	8	2	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132120476	C	C	132120476	1	2	49	0	1	0	0	0	0	0	0	0	8948	377	13	5		5	LOC150786	2	132120476	3'UTR	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1221751	132120476	111078897	204	53217											
LOC150786	150786	broad.mit.edu	37	chr2	132120496	132120496	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatataaataatgaagacGctgactttttttgtgcttgt	7	4	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132120496	T	T	132120496	1	4	49	0	1	0	0	0	0	0	0	0	8948	1102	38	3		3	LOC150786	2	132120496	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	20	132120496	111078877	205	53218											
NCKAP5	344148	broad.mit.edu	37	chr2	134104065	134104065	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgcttaaatttctggtGttagctaagggaaaacatgt	11	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134104065	A	A	134104065	1	1	49	0	1	0	0	0	0	0	0	0	10318	1392	48	4		4	NCKAP5	2	134104065	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1983569	134104065	109095308	206	53219											
MCM6	4175	broad.mit.edu	37	chr2	136603160	136603160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaaatattccagaaagcCagcacaagccatccttgggg	9	11	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136603160	A	A	136603160	1	1	49	0	1	0	0	0	0	0	0	0	9484	609	21	2		2	MCM6	2	136603160	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2499095	136603160	106596213	207	53220											
THSD7B	80731	broad.mit.edu	37	chr2	137750930	137750930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactaaaatggacataaaaGcatagtccagagtgcacaaa	7	8	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137750930	T	T	137750930	1	4	49	0	1	0	0	0	0	0	0	0	16003	986	34	3		3	THSD7B	2	137750930	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1147770	137750930	105448443	208	53221											
THSD7B	80731	broad.mit.edu	37	chr2	137964805	137964805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagtttattgtgggcattGtattacaaatgaggaaacta	10	3	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137964805	T	T	137964805	1	4	49	0	1	0	0	0	0	0	0	0	16003	1392	48	3		3	THSD7B	2	137964805	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	213875	137964805	105234568	209	53222											
LRP1B	53353	broad.mit.edu	37	chr2	141079827	141079827	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcattctcctttataggTgaagaaaaattacccaatgc	5	9	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141079827	G	G	141079827	1	3	49	0	1	0	0	0	0	0	0	0	9042	1711	59	5		5	LRP1B	2	141079827	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3115022	141079827	102119546	210	53223											
LRP1B	53353	broad.mit.edu	37	chr2	141114028	141114028	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggattcacattatcttcacAggtatattcagtaggagctg	9	7	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141114028	T	T	141114028	3	4	49	1	0	0	0	0	1	0	0	0	9042	188	7	5	2454	5	LRP1B	2	141114028	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	34201	141114028	102085345	211	53224											
LRP1B	53353	broad.mit.edu	37	chr2	141143292	141143292	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagcatttcaataattctaCcatttgaaattcaggtagtc	5	7	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141143292	G	G	141143292	1	3	49	0	1	0	0	0	0	0	0	0	9042	522	18	4		4	LRP1B	2	141143292	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	29264	141143292	102056081	212	53225											
LRP1B	53353	broad.mit.edu	37	chr2	141159362	141159362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctaggtagaataacactGtgaccaggaaagataaaacc	8	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141159362	T	T	141159362	1	4	49	0	1	0	0	0	0	0	0	0	9042	1392	48	3		3	LRP1B	2	141159362	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	16070	141159362	102040011	213	53226											
LRP1B	53353	broad.mit.edu	37	chr2	141747239	141747239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgattgactgggagggaggGggaagcaagattaattattt	15	2	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141747239	T	T	141747239	1	4	49	0	1	0	0	0	0	0	0	0	9042	1247	43	2		2	LRP1B	2	141747239	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	587877	141747239	101452134	214	53227											
ZEB2	9839	broad.mit.edu	37	chr2	145157219	145157219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgactcactaccggaagaCcgacaggcggaatattagga	11	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145157219	A	A	145157219	3	1	49	1	0	0	0	0	1	0	0	0	17750	507	18	3	2121	3	ZEB2	2	145157219	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3409980	145157219	98042154	215	53228											
RIF1	55183	broad.mit.edu	37	chr2	152299849	152299849	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatcagatgaaaggtaagTttgtactttaacttgaaact	8	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152299849	C	C	152299849	1	2	49	0	1	0	0	0	0	0	0	0	13468	1740	60	5		5	RIF1	2	152299849	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	7142630	152299849	90899524	216	53229											
BAZ2B	29994	broad.mit.edu	37	chr2	160319575	160319575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacatccttccatcttcaCgggtgtgaactgatccatgt	7	12	3	2	rs76497799	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160319575	A	A	160319575	1	1	49	0	1	0	0	0	0	0	0	0	1337	551	19	3		3	BAZ2B	2	160319575	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8019726	160319575	82879798	217	53230											
LY75	4065	broad.mit.edu	37	chr2	160734640	160734640	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaactaagtttttgaatttcTttcattggattattcccaag	6	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160734640	C	C	160734640	1	2	49	0	1	0	0	0	0	0	0	0	9187	1624	56	5		5	LY75	2	160734640	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	415065	160734640	82464733	218	53231											
SLC4A10	57282	broad.mit.edu	37	chr2	162652366	162652366	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctagtttcttttttttaactCtaaactcttatagctatctt	2	8	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162652366	G	G	162652366	1	3	49	0	1	0	0	0	0	0	0	0	14765	928	32	4		4	SLC4A10	2	162652366	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1917726	162652366	80547007	219	53232											
FIGN	55137	broad.mit.edu	37	chr2	164466341	164466341	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagacagtaattgtgctgTgagagcagttgtactattat	11	4	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164466341	C	C	164466341	2	2	49	1	0	0	0	0	0	0	0	1	5948	1683	59	5		5	FIGN	2	164466341	Silent	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1813975	164466341	78733032	220	53233											
SCN3A	6328	broad.mit.edu	37	chr2	165947591	165947591	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgccaaaggtctcaaagTtgaacatgtcatcaattcca	7	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165947591	A	A	165947591	3	1	49	1	0	0	0	0	1	0	0	0	14031	1725	60	5	934	5	SCN3A	2	165947591	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1481250	165947591	77251782	221	53234											
XIRP2	129446	broad.mit.edu	37	chr2	167760302	167760302	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaggattccctgagcagtCggcgcaggattgaacgcttt	14	9	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167760302	T	T	167760302	3	4	49	1	0	0	0	0	1	0	0	0	17557	875	31	4	312	4	XIRP2	2	167760302	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1812711	167760302	75439071	222	53235											
LASS6	253782	broad.mit.edu	37	chr2	169574413	169574413	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaattatgccaagtttcAgaaaatgtgtgatctcctgt	9	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169574413	T	T	169574413	3	4	49	1	0	0	0	0	1	0	0	0	8715	188	7	5	800	5	LASS6	2	169574413	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1814111	169574413	73624960	223	53236											
PPIG	9360	broad.mit.edu	37	chr2	170460774	170460774	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgttgtctttgtacaggtTtgttcacattttcaactgcc	7	9	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170460774	C	C	170460774	1	2	49	0	1	0	0	0	0	0	0	0	12425	1856	64	5		5	PPIG	2	170460774	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	886361	170460774	72738599	224	53237											
CDCA7	83879	broad.mit.edu	37	chr2	174230312	174230312	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgagagaagatatataacCgttcactggtgagagcctct	10	9	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174230312	T	T	174230312	3	4	49	1	0	0	0	0	1	0	0	0	3120	652	23	4	1053	4	CDCA7	2	174230312	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3769538	174230312	68969061	225	53238											
PDE11A	50940	broad.mit.edu	37	chr2	178762914	178762914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagaggtcattaaccacCtctagcaaagcctagaaaag	7	10	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178762914	A	A	178762914	3	1	49	1	0	0	0	0	1	0	0	0	11725	680	24	2	1696	2	PDE11A	2	178762914	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4532602	178762914	64436459	226	53239											
TTN	7273	broad.mit.edu	37	chr2	179475105	179475105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttaatatctttgcatgGtccaggtaggcctattacaa	8	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179475105	T	T	179475105	3	4	49	1	0	0	0	0	1	0	0	0	16861	1261	44	3	56913	3	TTN	2	179475105	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	712191	179475105	63724268	227	53240											
TTN	7273	broad.mit.edu	37	chr2	179500555	179500555	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaatactgggcataattaaTccactgtaggatatattgtt	7	6	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179500555	A	A	179500555	1	1	49	0	1	0	0	0	0	0	0	0	16861	1450	50	5		5	TTN	2	179500555	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	25450	179500555	63698818	228	53241											
CCDC141	285025	broad.mit.edu	37	chr2	179748647	179748647	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagctctgaggggtaacaTatgaagacacatcacacaag	10	8	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179748647	A	A	179748647	1	1	49	0	1	0	0	0	0	0	0	0	2801	1421	49	5		5	CCDC141	2	179748647	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	248092	179748647	63450726	229	53242											
ZNF385B	151126	broad.mit.edu	37	chr2	180626969	180626969	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgttgcccaggctggagTgcagtggcgtgatttcggct	15	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180626969	A	A	180626969	1	1	49	0	1	0	0	0	0	0	0	0	18003	1711	59	5		5	ZNF385B	2	180626969	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	878322	180626969	62572404	230	53243											
PDE1A	5136	broad.mit.edu	37	chr2	183194265	183194265	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagctgggattacaggcaccCgccagcagcccgagctaatt	11	13	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183194265	T	T	183194265	1	4	49	0	1	0	0	0	0	0	0	0	11727	667	23	4		4	PDE1A	2	183194265	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2567296	183194265	60005108	231	53244											
PMS1	5378	broad.mit.edu	37	chr2	190742055	190742055	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttatcaaaagaggacatcCaagacattatctacagaatg	6	8	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190742055	G	G	190742055	3	3	49	1	0	0	0	0	1	0	0	0	12237	595	21	4	2738	4	PMS1	2	190742055	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7547790	190742055	52457318	232	53245											
PLCL1	5334	broad.mit.edu	37	chr2	198817944	198817944	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgactctgaagcttcttttgTctatataatttccaaagttt	5	7	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198817944	C	C	198817944	1	2	49	0	1	0	0	0	0	0	0	0	12134	1682	58	5		5	PLCL1	2	198817944	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	8075889	198817944	44381429	233	53246											
ALS2CR12	130540	broad.mit.edu	37	chr2	202208754	202208754	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atactactgagtgacacagtCcaatctttagggtcctgtca	8	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202208754	A	A	202208754	1	1	49	0	1	0	0	0	0	0	0	0	553	870	30	3		3	ALS2CR12	2	202208754	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3390810	202208754	40990619	234	53247											
TRAK2	66008	broad.mit.edu	37	chr2	202277300	202277300	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagaatatatatcactgaCtgtttcacagctcacataaa	4	8	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202277300	G	G	202277300	1	3	49	0	1	0	0	0	0	0	0	0	16574	580	20	4		4	TRAK2	2	202277300	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	68546	202277300	40922073	235	53248											
CPS1	1373	broad.mit.edu	37	chr2	211513309	211513309	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacaatgattcaaaaattggGagatacagaaatgcatgctg	9	5	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211513309	A	A	211513309	1	1	49	0	1	0	0	0	0	0	0	0	3855	1189	41	4		4	CPS1	2	211513309	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	9236009	211513309	31686064	236	53249											
ERBB4	2066	broad.mit.edu	37	chr2	212495004	212495004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccatctacccccttgaagCcttgactatttttacaacat	3	14	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212495004	G	G	212495004	1	3	49	0	1	0	0	0	0	0	0	0	5251	754	26	4		4	ERBB4	2	212495004	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	981695	212495004	30704369	237	53250											
SPAG16	79582	broad.mit.edu	37	chr2	214208401	214208401	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaactgaaatttgagaactGaaaaaaacataatatgcaaa	5	4	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214208401	T	T	214208401	1	4	49	0	1	0	0	0	0	0	0	0	15094	1305	45	3		3	SPAG16	2	214208401	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1713397	214208401	28990972	238	53251											
SPAG16	79582	broad.mit.edu	37	chr2	214878756	214878756	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttctccaatactcttctCacaagctctgcagacaagac	4	15	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214878756	A	A	214878756	2	1	49	1	0	0	0	0	0	0	0	1	15094	813	29	3		3	SPAG16	2	214878756	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	670355	214878756	28320617	239	53252											
VWC2L	402117	broad.mit.edu	37	chr2	215301440	215301440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttcctgagtgtgtcaacCcagtctatgaaccagaacaa	8	11	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215301440	A	A	215301440	3	1	49	1	0	0	0	0	1	0	0	0	17371	623	22	2	484	2	VWC2L	2	215301440	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	422684	215301440	27897933	240	53253											
BARD1	580	broad.mit.edu	37	chr2	215593793	215593793	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgtattcaaaaacactgTatatgaatgaggaaaataaa	6	4	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215593793	C	C	215593793	1	2	49	0	1	0	0	0	0	0	0	0	1317	1653	57	5		5	BARD1	2	215593793	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	292353	215593793	27605580	241	53254											
MARCH4	57574	broad.mit.edu	37	chr2	217130281	217130281	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggctggagtgcagtggtgCgatcatggctcactacagcc	14	11	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217130281	G	G	217130281	1	3	49	0	1	0	0	0	0	0	0	0	9395	783	27	4		4	MARCH4	2	217130281	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1536488	217130281	26069092	242	53255											
USP37	57695	broad.mit.edu	37	chr2	219417703	219417703	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcctgctcctttgtctAatcatattgttttgtggaat	6	7	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219417703	T	T	219417703	1	4	49	0	1	0	0	0	0	0	0	0	17195	377	13	5		5	USP37	2	219417703	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2287422	219417703	23781670	243	53256											
PLCD4	84812	broad.mit.edu	37	chr2	219498867	219498867	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatacttggcagttaagccGtgtgtatcccagcggcctga	11	11	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219498867	A	A	219498867	3	1	49	1	0	0	0	0	1	0	0	0	12128	1145	40	4	1688	4	PLCD4	2	219498867	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	81164	219498867	23700506	244	53257											
PID1	55022	broad.mit.edu	37	chr2	229937922	229937922	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctaattttttgtattttTagtagagatggggtttcacc	10	4	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229937922	A	A	229937922	1	1	49	0	1	0	0	0	0	0	0	0	11977	1769	61	5		5	PID1	2	229937922	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	10439055	229937922	13261451	245	53258											
DGKD	8527	broad.mit.edu	37	chr2	234372225	234372225	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgcatctcctcactccacGcatctcctcactccacgcat	3	21	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234372225	A	A	234372225	1	1	49	0	1	0	0	0	0	0	0	0	4507	1102	38	4		4	DGKD	2	234372225	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4434303	234372225	8827148	246	53259											
USP40	55230	broad.mit.edu	37	chr2	234462925	234462925	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatcttttcaatccttagTgtcaacagcttcaagtatat	4	8	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234462925	A	A	234462925	1	1	49	0	1	0	0	0	0	0	0	0	17199	1711	59	5		5	USP40	2	234462925	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	90700	234462925	8736448	247	53260											
HDAC4	9759	broad.mit.edu	37	chr2	240267861	240267861	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcactcacccaacacacacTgtctaaaacacacacaccct	2	18	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240267861	A	A	240267861	1	1	49	0	1	0	0	0	0	0	0	0	7076	1595	55	5		5	HDAC4	2	240267861	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	5804936	240267861	2931512	248	53261											
ANO7	50636	broad.mit.edu	37	chr2	242135132	242135132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagcagacttcgtcctcGtttgggaggaggacctgaag	13	11	0	2	rs149691575		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242135132	T	T	242135132	3	4	49	1	0	0	0	0	1	0	0	0	702	1145	40	3	357	3	ANO7	2	242135132	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1867271	242135132	1064241	249	53262											
CNTN4	152330	broad.mit.edu	37	chr3	2468183	2468183	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgagtatttttgcatcgAtgtttatcatggatattggt	9	3	1	1	rs116211065	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2468183	T	T	2468183	1	4	49	0	1	0	0	0	0	0	0	0	3675	348	12	5		5	CNTN4	3	2468183	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08		2468183	195554247	250	53263											
CNTN4	152330	broad.mit.edu	37	chr3	2978238	2978238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcaggctcctgcctgctGtctaccagctgtctcacttc	7	16	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2978238	T	T	2978238	1	4	49	0	1	0	0	0	0	0	0	0	3675	1392	48	3		3	CNTN4	3	2978238	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	510055	2978238	195044192	251	53264											
IL5RA	3568	broad.mit.edu	37	chr3	3139640	3139640	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagcaccgcaagccagtcaCgccctttgctgaggataaaa	9	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3139640	T	T	3139640	3	4	49	1	0	0	0	0	1	0	0	0	7770	536	19	4	689	4	IL5RA	3	3139640	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	161402	3139640	194882790	252	53265											
GRM7	2917	broad.mit.edu	37	chr3	6903353	6903353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccagatcaacagtgatcCcaacctactgcccaacgtga	8	14	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6903353	A	A	6903353	3	1	49	1	0	0	0	0	1	0	0	0	6868	623	22	2	280	2	GRM7	3	6903353	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3763713	6903353	191119077	253	53266											
GRM7	2917	broad.mit.edu	37	chr3	7436534	7436534	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggagttcaagaccattctGaccaatatggtgaaatcctg	9	9	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7436534	T	T	7436534	1	4	49	0	1	0	0	0	0	0	0	0	6868	1305	45	3		3	GRM7	3	7436534	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	533181	7436534	190585896	254	53267											
GRM7	2917	broad.mit.edu	37	chr3	7484947	7484947	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttcctcaccattggcCaattcaaagtaaacctctac	3	12	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7484947	A	A	7484947	1	1	49	0	1	0	0	0	0	0	0	0	6868	609	21	2		2	GRM7	3	7484947	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	48413	7484947	190537483	255	53268											
C3orf32	51066	broad.mit.edu	37	chr3	8770721	8770721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgcaacccatagggccCcatgcttgggagatgccaca	12	13	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8770721	A	A	8770721	1	1	49	0	1	0	0	0	0	0	0	0	2244	638	22	2		2	C3orf32	3	8770721	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1285774	8770721	189251709	256	53269											
ATP2B2	491	broad.mit.edu	37	chr3	10413446	10413446	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccagtacctctgtaccatCccatggatgttgctccaggt	9	14	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10413446	G	G	10413446	1	3	49	0	1	0	0	0	0	0	0	0	1144	870	30	4		4	ATP2B2	3	10413446	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1642725	10413446	187608984	257	53270											
ATP2B2	491	broad.mit.edu	37	chr3	10694850	10694850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaagagttctcagataGgtatttctaaggcaagcccc	11	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10694850	T	T	10694850	1	4	49	0	1	0	0	0	0	0	0	0	1144	1015	35	2		2	ATP2B2	3	10694850	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	281404	10694850	187327580	258	53271											
ATP2B2	491	broad.mit.edu	37	chr3	10722644	10722644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatggtttagcaccatctaCctggtgctgtcctcttatag	9	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10722644	T	T	10722644	1	4	49	0	1	0	0	0	0	0	0	0	1144	522	18	4		4	ATP2B2	3	10722644	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	27794	10722644	187299786	259	53272											
XPC	7508	broad.mit.edu	37	chr3	14219367	14219367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaaatacactcttgaggCtgaactgactggacttgctg	10	8	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14219367	A	A	14219367	1	1	49	0	1	0	0	0	0	0	0	0	17568	812	28	3		3	XPC	3	14219367	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3496723	14219367	183803063	260	53273											
FGD5	152273	broad.mit.edu	37	chr3	14926391	14926391	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggcaaactcacgactgCgcctgccgacaaaaagtttg	11	11	1	0	rs145779263	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14926391	T	T	14926391	1	4	49	0	1	0	0	0	0	0	0	0	5893	783	27	4		4	FGD5	3	14926391	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	707024	14926391	183096039	261	53274											
PLCL2	23228	broad.mit.edu	37	chr3	16886919	16886919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcgccaaggtgagtctGgcagggctaaagaactggac	13	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16886919	T	T	16886919	1	4	49	0	1	0	0	0	0	0	0	0	12135	1363	47	2		2	PLCL2	3	16886919	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1960528	16886919	181135511	262	53275											
ZNF385D	79750	broad.mit.edu	37	chr3	21782119	21782119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgtaatcaggcccacaCgtcatgccatacactgattt	7	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21782119	A	A	21782119	1	1	49	0	1	0	0	0	0	0	0	0	18004	551	19	3		3	ZNF385D	3	21782119	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4895200	21782119	176240311	263	53276											
ZNF385D	79750	broad.mit.edu	37	chr3	21811749	21811749	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggatctaattaaactaaaGagcttctgcacagcaaaaga	8	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21811749	A	A	21811749	1	1	49	0	1	0	0	0	0	0	0	0	18004	957	33	4		4	ZNF385D	3	21811749	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	29630	21811749	176210681	264	53277											
ZNF385D	79750	broad.mit.edu	37	chr3	22109373	22109373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatacaaaaattagctggGcttggtggcacacctgtagc	10	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22109373	T	T	22109373	1	4	49	0	1	0	0	0	0	0	0	0	18004	1218	42	3		3	ZNF385D	3	22109373	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	297624	22109373	175913057	265	53278											
NEK10	152110	broad.mit.edu	37	chr3	27212575	27212575	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcctcctatctctgcctctgGaacattgtaatcaaggttct	7	12	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27212575	C	C	27212575	1	2	49	0	1	0	0	0	0	0	0	0	10417	1189	41	4		4	NEK10	3	27212575	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5103202	27212575	170809855	266	53279											
EOMES	8320	broad.mit.edu	37	chr3	27759021	27759021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattcagattcataggaaCtgatgtctagtttgttggtc	9	5	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27759021	A	A	27759021	3	1	49	1	0	0	0	0	1	0	0	0	5189	565	20	3	463	3	EOMES	3	27759021	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	546446	27759021	170263409	267	53280											
GADL1	339896	broad.mit.edu	37	chr3	30896162	30896162	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtctctaatccacgtttgGtgtgaaatttctatagcatg	8	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30896162	C	C	30896162	1	2	49	0	1	0	0	0	0	0	0	0	6245	1276	44	4		4	GADL1	3	30896162	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3137141	30896162	167126268	268	53281											
ARPP21	10777	broad.mit.edu	37	chr3	35751310	35751310	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgatgtgggttcttcccCctgcgtcagtagaagtgtga	12	8	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35751310	G	G	35751310	1	3	49	0	1	0	0	0	0	0	0	0	982	638	22	4		4	ARPP21	3	35751310	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4855148	35751310	162271120	269	53282											
ITGA9	3680	broad.mit.edu	37	chr3	37539836	37539836	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaggagaagctagattgaTgggagacatcagaactcaac	14	6	2	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37539836	A	A	37539836	1	1	49	0	1	0	0	0	0	0	0	0	7953	1479	51	5		5	ITGA9	3	37539836	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1788526	37539836	160482594	270	53283											
ITGA9	3680	broad.mit.edu	37	chr3	37544053	37544053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctattgctgccttgtggtcCcctcttccagtttgtgtttt	8	11	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37544053	A	A	37544053	1	1	49	0	1	0	0	0	0	0	0	0	7953	638	22	2		2	ITGA9	3	37544053	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4217	37544053	160478377	271	53284											
DLEC1	9940	broad.mit.edu	37	chr3	38080913	38080913	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcagcccggccccgccgccTcacgcagcttgcgctggcgc	13	21	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38080913	A	A	38080913	3	1	49	1	0	0	0	0	1	0	0	0	4592	1551	54	5	199	5	DLEC1	3	38080913	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	536860	38080913	159941517	272	53285											
SCN10A	6336	broad.mit.edu	37	chr3	38835652	38835652	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccctcatatctggcccctCcctgaactcacacttggctc	5	19	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835652	A	A	38835652	1	1	49	0	1	0	0	0	0	0	0	0	14025	870	30	3		3	SCN10A	3	38835652	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	754739	38835652	159186778	273	53286											
SCN11A	11280	broad.mit.edu	37	chr3	38926863	38926863	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagatcaatggtgctacAttctgatagtatactggtaa	9	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38926863	G	G	38926863	3	3	49	1	0	0	0	0	1	0	0	0	14026	217	8	5	2435	5	SCN11A	3	38926863	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	91211	38926863	159095567	274	53287											
ZNF620	253639	broad.mit.edu	37	chr3	40557709	40557709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagatatttcattcaaatGgcagacttccaccgacatga	8	10	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40557709	A	A	40557709	3	1	49	1	0	0	0	0	1	0	0	0	18171	1348	47	4	638	4	ZNF620	3	40557709	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1630846	40557709	157464721	275	53288											
ZNF620	253639	broad.mit.edu	37	chr3	40558265	40558265	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcgagaaaccttatgagTgtaaagtgtgtggtaaaacc	12	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40558265	C	C	40558265	3	2	49	1	0	0	0	0	1	0	0	0	18171	1696	59	5	1194	5	ZNF620	3	40558265	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	556	40558265	157464165	276	53289											
ULK4	54986	broad.mit.edu	37	chr3	41878184	41878184	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagttcttatattgcaTtaaacttttacatgattcct	3	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41878184	C	C	41878184	1	2	49	0	1	0	0	0	0	0	0	0	17104	1508	52	5		5	ULK4	3	41878184	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1319919	41878184	156144246	277	53290											
LAMB2	3913	broad.mit.edu	37	chr3	49162900	49162900	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagactgctgagtgccccctCgtggctgcactggcaggcta	14	13	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49162900	A	A	49162900	4	1	49	1	0	0	0	0	0	1	0	0	8683	893	31	3	2946	3	LAMB2	3	49162900	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7284716	49162900	148859530	278	53291											
NPRL2	10641	broad.mit.edu	37	chr3	50387112	50387112	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacctctagtgtggtcagaTagccagccagctttttaaca	9	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50387112	G	G	50387112	3	3	49	1	0	0	0	0	1	0	0	0	10692	1406	49	5	855	5	NPRL2	3	50387112	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1224212	50387112	147635318	279	53292											
DOCK3	1795	broad.mit.edu	37	chr3	50925859	50925859	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcatatcgtgaaaatggccAtactgcccaaggtaatttat	8	8	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50925859	T	T	50925859	1	4	49	0	1	0	0	0	0	0	0	0	4728	232	8	5		5	DOCK3	3	50925859	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	538747	50925859	147096571	280	53293											
RFT1	91869	broad.mit.edu	37	chr3	53156497	53156498	+	Missense_Mutation	DNP	GG	AA	AA													cactccagttgcatagtgagGgacaacattaggatcaggca							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	53156498	AA	AA	53156497	3	1	49	1	0	0	0	0	1	0	0	0	13365	1232	43	4	1316	4	RFT1	3	53156497	Missense_Mutation	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	2230638	53156497	144865933	281	53294											
SELK	58515	broad.mit.edu	37	chr3	53925866	53925866	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcgcctggcccctgtcggTttctgtatctccctctgctc	11	16	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53925866	A	A	53925866	1	1	49	0	1	0	0	0	0	0	0	0	14128	1740	60	5		5	SELK	3	53925866	5'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	769369	53925866	144096564	282	53295											
CACNA2D3	55799	broad.mit.edu	37	chr3	54458669	54458669	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggacctgggggtgggctCtgtactctggggatggagca	18	9	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54458669	G	G	54458669	1	3	49	0	1	0	0	0	0	0	0	0	2576	928	32	4		4	CACNA2D3	3	54458669	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	532803	54458669	143563761	283	53296											
CACNA2D3	55799	broad.mit.edu	37	chr3	54810601	54810601	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaacaaaacaaaacagtaaCaacaacaaaagaggcctgga	6	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54810601	T	T	54810601	1	4	49	0	1	0	0	0	0	0	0	0	2576	493	17	4		4	CACNA2D3	3	54810601	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	351932	54810601	143211829	284	53297											
CACNA2D3	55799	broad.mit.edu	37	chr3	54914975	54914975	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttagctgaagaacttgttCatctgtccgcacctgtgacc	9	11	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54914975	A	A	54914975	1	1	49	0	1	0	0	0	0	0	0	0	2576	841	29	3		3	CACNA2D3	3	54914975	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	104374	54914975	143107455	285	53298											
APPL1	26060	broad.mit.edu	37	chr3	57294181	57294181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaagttacaaggctcacGgtgagttccacatgatttaa	8	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57294181	T	T	57294181	2	4	49	1	0	0	0	0	0	0	0	1	819	1130	39	1		1	APPL1	3	57294181	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2379206	57294181	140728249	286	53299											
FLNB	2317	broad.mit.edu	37	chr3	58087887	58087887	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggctttcacgactctgacTaaagaatgaaagattgaatt	8	6	2	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58087887	C	C	58087887	1	2	49	0	1	0	0	0	0	0	0	0	5992	1537	53	5		5	FLNB	3	58087887	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	793706	58087887	139934543	287	53300											
RPP14	11102	broad.mit.edu	37	chr3	58296432	58296432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttggaggccgaggtggGcagatcatgaggtcaagaga	16	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58296432	T	T	58296432	1	4	49	0	1	0	0	0	0	0	0	0	13720	1218	42	3		3	RPP14	3	58296432	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	208545	58296432	139725998	288	53301											
C3orf67	200844	broad.mit.edu	37	chr3	58792284	58792284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtttcctcagacacaaCccacaagaagggtatgggtg	10	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58792284	A	A	58792284	1	1	49	0	1	0	0	0	0	0	0	0	2263	522	18	3		3	C3orf67	3	58792284	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	495852	58792284	139230146	289	53302											
FHIT	2272	broad.mit.edu	37	chr3	59891824	59891824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttccttttcaaaagaccCcttcctccttgtgtattctg	4	13	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59891824	A	A	59891824	1	1	49	0	1	0	0	0	0	0	0	0	5934	638	22	2		2	FHIT	3	59891824	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1099540	59891824	138130606	290	53303											
PTPRG	5793	broad.mit.edu	37	chr3	61839410	61839410	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catatgacaactaagatgcaGagtgctaggaaagtctttac	9	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61839410	T	T	61839410	1	4	49	0	1	0	0	0	0	0	0	0	12910	957	33	3		3	PTPRG	3	61839410	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1947586	61839410	136183020	291	53304											
CADPS	8618	broad.mit.edu	37	chr3	62449288	62449288	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggaagccattcagtggtgGgggaaagctggcaggacaca	16	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62449288	C	C	62449288	1	2	49	0	1	0	0	0	0	0	0	0	2596	1247	43	4		4	CADPS	3	62449288	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	609878	62449288	135573142	292	53305											
MAGI1	9223	broad.mit.edu	37	chr3	65449226	65449226	+	Intron	SNP	G	C	C													gatgttcatcagggatattgGcctgaaatgtgtgtgtgtgt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65449226	C	C	65449226	1	2	49	0	1	0	0	0	0	0	0	0	9282	1218	42	4		4	MAGI1	3	65449226	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2999938	65449226	132573204	293	53306	254	2									
MAGI1	9223	broad.mit.edu	37	chr3	65449235	65449235	+	Intron	SNP	G	T	T													cagggatattggcctgaaatGtgtgtgtgtgtgtgtgtgtg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65449235	T	T	65449235	1	4	49	0	1	0	0	0	0	0	0	0	9282	1392	48	3		3	MAGI1	3	65449235	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	9	65449235	132573195	294	53307	254	2									
MAGI1	9223	broad.mit.edu	37	chr3	65623829	65623829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttaatcactctgggtctcCatttcctcatcagaaaaatg	5	11	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65623829	A	A	65623829	1	1	49	0	1	0	0	0	0	0	0	0	9282	609	21	2		2	MAGI1	3	65623829	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	174594	65623829	132398601	295	53308											
SUCLG2	8801	broad.mit.edu	37	chr3	67621907	67621907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggccagtgtccaaatgcCaattccacataaaacacttc	6	12	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67621907	A	A	67621907	1	1	49	0	1	0	0	0	0	0	0	0	15483	609	21	2		2	SUCLG2	3	67621907	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1998078	67621907	130400523	296	53309											
FOXP1	27086	broad.mit.edu	37	chr3	71161869	71161869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaggattccaggaagtgCgctttgggactgggtcctga	14	7	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71161869	A	A	71161869	1	1	49	0	1	0	0	0	0	0	0	0	6086	783	27	3		3	FOXP1	3	71161869	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3539962	71161869	126860561	297	53310											
ROBO2	6092	broad.mit.edu	37	chr3	77112280	77112280	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggactattaaagcatataGggtgggaactgaaaacatca	11	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77112280	A	A	77112280	1	1	49	0	1	0	0	0	0	0	0	0	13625	1015	35	4		4	ROBO2	3	77112280	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5950411	77112280	120910150	298	53311											
ROBO1	6091	broad.mit.edu	37	chr3	78763601	78763601	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccaccatattttctgcaaCacaagtgtatgaacccatgt	6	12	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78763601	G	G	78763601	3	3	49	1	0	0	0	0	1	0	0	0	13624	478	17	4	4073	4	ROBO1	3	78763601	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1651321	78763601	119258829	299	53312											
ROBO1	6091	broad.mit.edu	37	chr3	79250254	79250254	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttattcttctcatcctcattCttaatagcctattctggaca	3	11	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79250254	A	A	79250254	1	1	49	0	1	0	0	0	0	0	0	0	13624	928	32	3		3	ROBO1	3	79250254	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	486653	79250254	118772176	300	53313											
ROBO1	6091	broad.mit.edu	37	chr3	79815074	79815074	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacagacaaccatctctTaacaggcctctgtaacacac	6	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79815074	A	A	79815074	1	1	49	0	1	0	0	0	0	0	0	0	13624	1769	61	5		5	ROBO1	3	79815074	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	564820	79815074	118207356	301	53314											
CADM2	253559	broad.mit.edu	37	chr3	86061744	86061744	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgcccccaactgcacgCgaagcgcacgcagtccgacc	11	19	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86061744	T	T	86061744	1	4	49	0	1	0	0	0	0	0	0	0	2593	783	27	4		4	CADM2	3	86061744	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6246670	86061744	111960686	302	53315											
CHMP2B	25978	broad.mit.edu	37	chr3	87295012	87295012	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctacacaaacaaaagtgaTgaattcccaaatgaagatgg	8	7	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87295012	A	A	87295012	3	1	49	1	0	0	0	0	1	0	0	0	3386	1464	51	5	285	5	CHMP2B	3	87295012	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1233268	87295012	110727418	303	53316											
EPHA6	285220	broad.mit.edu	37	chr3	96591410	96591410	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgagaaagtctttatatcTtcttcacttttcagggaaaa	6	6	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96591410	C	C	96591410	1	2	49	0	1	0	0	0	0	0	0	0	5213	1624	56	5		5	EPHA6	3	96591410	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	9296398	96591410	101431020	304	53317											
EPHA6	285220	broad.mit.edu	37	chr3	96788175	96788175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcttcatccttattgtcCtccattgataggctgagaag	8	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96788175	A	A	96788175	1	1	49	0	1	0	0	0	0	0	0	0	5213	696	24	2		2	EPHA6	3	96788175	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	196765	96788175	101234255	305	53318											
EPHA6	285220	broad.mit.edu	37	chr3	96857823	96857823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaaactctgggtcagtGctcttctctgagtggactct	11	10	5	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96857823	T	T	96857823	1	4	49	0	1	0	0	0	0	0	0	0	5213	1334	46	3		3	EPHA6	3	96857823	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	69648	96857823	101164607	306	53319											
EPHA6	285220	broad.mit.edu	37	chr3	97334109	97334109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagatgcccttgcgaacCcactccaccagggttttcag	10	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97334109	A	A	97334109	1	1	49	0	1	0	0	0	0	0	0	0	5213	638	22	2		2	EPHA6	3	97334109	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	476286	97334109	100688321	307	53320											
ABI3BP	25890	broad.mit.edu	37	chr3	100647946	100647946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctatcaagtctcacaaCgaatctaaactcaaccagct	5	12	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100647946	A	A	100647946	1	1	49	0	1	0	0	0	0	0	0	0	91	551	19	3		3	ABI3BP	3	100647946	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3313837	100647946	97374484	308	53321											
MORC1	27136	broad.mit.edu	37	chr3	108759095	108759095	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaggaaagtatggcacattCcaagcaaaagaatgaatcaa	8	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108759095	A	A	108759095	1	1	49	0	1	0	0	0	0	0	0	0	9795	870	30	3		3	MORC1	3	108759095	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8111149	108759095	89263335	309	53322											
PHLDB2	90102	broad.mit.edu	37	chr3	111542024	111542024	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggagttgggaaataccttGatcatctcctccattttgag	10	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111542024	T	T	111542024	1	4	49	0	1	0	0	0	0	0	0	0	11947	1305	45	3		3	PHLDB2	3	111542024	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2782929	111542024	86480406	310	53323											
PHLDB2	90102	broad.mit.edu	37	chr3	111593363	111593363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgacaaggaccttgttcCatgtcctcattcaggagtgg	11	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111593363	T	T	111593363	1	4	49	0	1	0	0	0	0	0	0	0	11947	609	21	4		4	PHLDB2	3	111593363	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	51339	111593363	86429067	311	53324											
CD200R1	131450	broad.mit.edu	37	chr3	112653642	112653642	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccaagatcatgccattgcActccagcctgggtgacaaga	9	12	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112653642	T	T	112653642	1	4	49	0	1	0	0	0	0	0	0	0	3011	174	6	5		5	CD200R1	3	112653642	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1060279	112653642	85368788	312	53325											
BOC	91653	broad.mit.edu	37	chr3	112944694	112944694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctcatctagaagccttGgcccttgcctcagtttacct	6	14	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112944694	T	T	112944694	1	4	49	0	1	0	0	0	0	0	0	0	1487	1363	47	2		2	BOC	3	112944694	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	291052	112944694	85077736	313	53326											
BOC	91653	broad.mit.edu	37	chr3	112997244	112997244	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccagctactgcctccttgTggtttgtgtgctaggctgag	12	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112997244	A	A	112997244	1	1	49	0	1	0	0	0	0	0	0	0	1487	1711	59	5		5	BOC	3	112997244	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	52550	112997244	85025186	314	53327											
WDR52	55779	broad.mit.edu	37	chr3	113128407	113128407	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaacactttgagaacaTattccattttatgacttggg	7	6	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113128407	A	A	113128407	1	1	49	0	1	0	0	0	0	0	0	0	17431	1421	49	5		5	WDR52	3	113128407	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	131163	113128407	84894023	315	53328											
LSAMP	4045	broad.mit.edu	37	chr3	115734314	115734314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattgccctctgggagtcaCaggattatgaaagtctaact	9	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115734314	A	A	115734314	1	1	49	0	1	0	0	0	0	0	0	0	9135	493	17	3		3	LSAMP	3	115734314	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2605907	115734314	82288116	316	53329											
LSAMP	4045	broad.mit.edu	37	chr3	115805312	115805312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtttctccagctcaacccGtgggtccagagaccacttgt	10	14	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115805312	T	T	115805312	2	4	49	1	0	0	0	0	0	0	0	1	9135	1144	40	3		3	LSAMP	3	115805312	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	70998	115805312	82217118	317	53330											
LSAMP	4045	broad.mit.edu	37	chr3	115848477	115848477	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaccttttcccctataAtcctgctagcaagatgtggc	7	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115848477	G	G	115848477	1	3	49	0	1	0	0	0	0	0	0	0	9135	116	4	5		5	LSAMP	3	115848477	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	43165	115848477	82173953	318	53331											
LSAMP	4045	broad.mit.edu	37	chr3	116110345	116110345	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgggagacttctggaGcccaccaccctgggggccac	13	17	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116110345	C	C	116110345	1	2	49	0	1	0	0	0	0	0	0	0	9135	986	34	4		4	LSAMP	3	116110345	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	261868	116110345	81912085	319	53332											
IGSF11	152404	broad.mit.edu	37	chr3	118623810	118623810	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacctcaattaactttcTatattgtcagtggctaggac	6	8	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118623810	C	C	118623810	1	2	49	0	1	0	0	0	0	0	0	0	7668	1537	53	5		5	IGSF11	3	118623810	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2513465	118623810	79398620	320	53333											
IGSF11	152404	broad.mit.edu	37	chr3	118714380	118714380	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaacaacaaagaagaaaaGagagtccagaaagctccaaa	7	7	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118714380	T	T	118714380	1	4	49	0	1	0	0	0	0	0	0	0	7668	957	33	3		3	IGSF11	3	118714380	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	90570	118714380	79308050	321	53334											
TMEM39A	55254	broad.mit.edu	37	chr3	119180915	119180915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagggcccctccttccacCgggcatgtccaggaaccagt	10	16	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119180915	A	A	119180915	3	1	49	1	0	0	0	0	1	0	0	0	16284	652	23	1	1491	1	TMEM39A	3	119180915	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	466535	119180915	78841515	322	53335											
NR1I2	8856	broad.mit.edu	37	chr3	119501728	119501728	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctacctctactattgaaagGgcaccttgtcccacagaacc	6	14	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119501728	C	C	119501728	1	2	49	0	1	0	0	0	0	0	0	0	10715	1247	43	4		4	NR1I2	3	119501728	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	320813	119501728	78520702	323	53336											
STXBP5L	9515	broad.mit.edu	37	chr3	120899706	120899706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcctggacaacaagaGtgaaactctgacttgaaaag	9	10	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120899706	T	T	120899706	1	4	49	0	1	0	0	0	0	0	0	0	15475	1044	36	3		3	STXBP5L	3	120899706	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1397978	120899706	77122724	324	53337											
POLQ	10721	broad.mit.edu	37	chr3	121251800	121251801	+	Intron	DEL	AG	-	-													gaaaatgaaatcaaacacacAgataaaaatagtagtgatgt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121251801	-	-	121251800	6	5	49	0	1	1	0	1	0	0	0	0	12303	203	7	0		0	POLQ	3	121251800	Intron	DEL	AG	TCGA-17-Z016-01A-01W-0746-08	352094	121251800	76770630	325	53338											
ARGFX	503582	broad.mit.edu	37	chr3	121305147	121305147	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagaggctggtggcctcGgttcctgctttgtactctga	15	9	1	2	rs145252171		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121305147	T	T	121305147	2	4	49	1	0	0	0	0	0	0	0	1	861	1103	39	1		1	ARGFX	3	121305147	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	53347	121305147	76717283	326	53339											
CASR	846	broad.mit.edu	37	chr3	121916204	121916204	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctccctctactagttttgtGaactccagcagcccttattt	5	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121916204	T	T	121916204	1	4	49	0	1	0	0	0	0	0	0	0	2708	1305	45	3		3	CASR	3	121916204	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	611057	121916204	76106226	327	53340											
CASR	846	broad.mit.edu	37	chr3	121928070	121928070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaacactgccctaaagCagtctctctgaaacatcctc	6	13	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121928070	A	A	121928070	1	1	49	0	1	0	0	0	0	0	0	0	2708	725	25	3		3	CASR	3	121928070	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	11866	121928070	76094360	328	53341											
DIRC2	84925	broad.mit.edu	37	chr3	122598179	122598179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcattctgtgcttcaGggaatcctatgacagactct	7	13	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122598179	T	T	122598179	3	4	49	1	0	0	0	0	1	0	0	0	4574	1000	35	2	1425	2	DIRC2	3	122598179	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	670109	122598179	75424251	329	53342											
SEMA5B	54437	broad.mit.edu	37	chr3	122748402	122748402	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcacaaaaaatagaagTatgtgcaatatagagatacc	7	6	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122748402	A	A	122748402	1	1	49	0	1	0	0	0	0	0	0	0	14151	1653	57	5		5	SEMA5B	3	122748402	5'Flank	SNP	T	TCGA-17-Z016-01A-01W-0746-08	150223	122748402	75274028	330	53343											
KALRN	8997	broad.mit.edu	37	chr3	124351421	124351421	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacgagtcctgtgcgtcgGcttaacagcgggaaggcaga	15	10	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124351421	T	T	124351421	2	4	49	1	0	0	0	0	0	0	0	1	8045	1190	42	3		3	KALRN	3	124351421	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1603019	124351421	73671009	331	53344											
UROC1	131669	broad.mit.edu	37	chr3	126226902	126226902	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgaccaaagtctgctcctCtgtcatcttcgacaagtaga	7	12	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126226902	A	A	126226902	4	1	49	1	0	0	0	0	0	1	0	0	17154	922	32	3	1830	3	UROC1	3	126226902	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1875481	126226902	71795528	332	53345											
ATP2C1	27032	broad.mit.edu	37	chr3	130648810	130648810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgttgaaagagtagccaGttgtcttttctgggtagatc	13	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130648810	T	T	130648810	1	4	49	0	1	0	0	0	0	0	0	0	1147	1044	36	3		3	ATP2C1	3	130648810	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4421908	130648810	67373620	333	53346											
CPNE4	131034	broad.mit.edu	37	chr3	131476854	131476854	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgcctggattcccaggCaaaagtttgctgcaggggca	13	9	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131476854	T	T	131476854	1	4	49	0	1	0	0	0	0	0	0	0	3846	725	25	4		4	CPNE4	3	131476854	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	828044	131476854	66545576	334	53347											
TF	7018	broad.mit.edu	37	chr3	133472219	133472219	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accggggaaaagagaaacacAatccatcactccctctatgc	7	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133472219	T	T	133472219	1	4	49	0	1	0	0	0	0	0	0	0	15908	145	5	5		5	TF	3	133472219	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1995365	133472219	64550211	335	53348											
EPHB1	2047	broad.mit.edu	37	chr3	134746772	134746772	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtctattcagagattcaActtcttcctggtttagtctt	7	8	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134746772	T	T	134746772	1	4	49	0	1	0	0	0	0	0	0	0	5216	58	2	5		5	EPHB1	3	134746772	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1274553	134746772	63275658	336	53349											
EPHB1	2047	broad.mit.edu	37	chr3	134804251	134804251	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgcatgcaggtttctggtCggtgtcaacacatggaaagc	12	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134804251	A	A	134804251	1	1	49	0	1	0	0	0	0	0	0	0	5216	899	31	3		3	EPHB1	3	134804251	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	57479	134804251	63218179	337	53350											
EPHB1	2047	broad.mit.edu	37	chr3	134978135	134978135	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcaatctccatttctcagTgacagaagcatgtttgagat	9	8	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134978135	A	A	134978135	1	1	49	0	1	0	0	0	0	0	0	0	5216	1711	59	5		5	EPHB1	3	134978135	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	173884	134978135	63044295	338	53351											
STAG1	10274	broad.mit.edu	37	chr3	136196307	136196307	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatacaaagctagaatgcAttcatactcgctttccataa	4	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136196307	G	G	136196307	1	3	49	0	1	0	0	0	0	0	0	0	15360	232	8	5		5	STAG1	3	136196307	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1218172	136196307	61826123	339	53352											
IL20RB	53833	broad.mit.edu	37	chr3	136729000	136729000	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taatcagctgcagaagggagGaggtggatgcctgtgccacg	16	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136729000	T	T	136729000	4	4	49	1	0	0	0	0	0	1	0	0	7739	1175	41	3	897	3	IL20RB	3	136729000	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	532693	136729000	61293430	340	53353											
SOX14	8403	broad.mit.edu	37	chr3	137483968	137483968	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggcctgcccgtgggggcCtccgacggcctcctgagcgc	16	17	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137483968	T	T	137483968	2	4	49	1	0	0	0	0	0	0	0	1	15059	668	24	4		4	SOX14	3	137483968	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	754968	137483968	60538462	341	53354											
FOXL2	668	broad.mit.edu	37	chr3	138664519	138664519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggcgagctcgggctgcCgggcacaagcgaactgcagg	16	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138664519	A	A	138664519	3	1	49	1	0	0	0	0	1	0	0	0	6077	652	23	1	88	1	FOXL2	3	138664519	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1180551	138664519	59357911	342	53355											
CLSTN2	64084	broad.mit.edu	37	chr3	139739590	139739590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttataaatgcatctgtctgGgcacattatctaaattgtta	7	6	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139739590	T	T	139739590	1	4	49	0	1	0	0	0	0	0	0	0	3594	1247	43	2		2	CLSTN2	3	139739590	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1075071	139739590	58282840	343	53356											
ATR	545	broad.mit.edu	37	chr3	142218312	142218312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcccagctaattttttgtAtttttagtagagacggggtt	10	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142218312	G	G	142218312	1	3	49	0	1	0	0	0	0	0	0	0	1208	464	16	5		5	ATR	3	142218312	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2478722	142218312	55804118	344	53357											
SLC9A9	285195	broad.mit.edu	37	chr3	142997326	142997326	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtacacaaactgagtgacTtaaaactgcaaatttattgt	6	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142997326	A	A	142997326	1	1	49	0	1	0	0	0	0	0	0	0	14835	1624	56	5		5	SLC9A9	3	142997326	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	779014	142997326	55025104	345	53358											
SLC9A9	285195	broad.mit.edu	37	chr3	143090914	143090914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaagaaatcatagatcCaaataaatggaaacatatca	6	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143090914	A	A	143090914	1	1	49	0	1	0	0	0	0	0	0	0	14835	609	21	2		2	SLC9A9	3	143090914	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	93588	143090914	54931516	346	53359											
CPA3	1359	broad.mit.edu	37	chr3	148596236	148596236	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcaaacagaatcttgaTtcatgatctacaagaagaga	7	8	4	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148596236	G	G	148596236	3	3	49	1	0	0	0	0	1	0	0	0	3823	1493	52	5	292	5	CPA3	3	148596236	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	5505322	148596236	49426194	347	53360											
CLRN1	7401	broad.mit.edu	37	chr3	150670814	150670814	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctgttttctgaccaacaCtaatttgacttttccttggt	5	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150670814	G	G	150670814	1	3	49	0	1	0	0	0	0	0	0	0	3589	580	20	4		4	CLRN1	3	150670814	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2074578	150670814	47351616	348	53361											
MED12L	116931	broad.mit.edu	37	chr3	151126947	151126947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatgtaatgagattagatGtgggttatttggattattaa	10	2	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151126947	A	A	151126947	1	1	49	0	1	0	0	0	0	0	0	0	9522	1392	48	4		4	MED12L	3	151126947	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	456133	151126947	46895483	349	53362											
MME	4311	broad.mit.edu	37	chr3	154820393	154820393	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggcatgtgttaacaagatGatttagaactttgcgaccag	11	6	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154820393	T	T	154820393	1	4	49	0	1	0	0	0	0	0	0	0	9738	1305	45	3		3	MME	3	154820393	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3693446	154820393	43202037	350	53363											
KCNAB1	7881	broad.mit.edu	37	chr3	155972281	155972281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagttgggtttgtagctGcccaatggccactgctcaga	12	11	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155972281	T	T	155972281	1	4	49	0	1	0	0	0	0	0	0	0	8079	1334	46	3		3	KCNAB1	3	155972281	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1151888	155972281	42050149	351	53364											
KCNAB1	7881	broad.mit.edu	37	chr3	156097834	156097834	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttccctttcctacacctCataattctagatatggggct	6	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156097834	G	G	156097834	1	3	49	0	1	0	0	0	0	0	0	0	8079	841	29	4		4	KCNAB1	3	156097834	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	125553	156097834	41924596	352	53365											
CCNL1	57018	broad.mit.edu	37	chr3	156877009	156877009	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacttttcgttaagaggGcacttaggctcgtgatcgat	11	8	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156877009	A	A	156877009	1	1	49	0	1	0	0	0	0	0	0	0	2961	1218	42	4		4	CCNL1	3	156877009	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	779175	156877009	41145421	353	53366											
SCHIP1	29970	broad.mit.edu	37	chr3	158920739	158920739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgatcacagctgagcCcacagacaagtaacatagat	8	11	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158920739	A	A	158920739	1	1	49	0	1	0	0	0	0	0	0	0	14017	638	22	2		2	SCHIP1	3	158920739	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2043730	158920739	39101691	354	53367											
SCHIP1	29970	broad.mit.edu	37	chr3	159116723	159116723	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatacagaacttaaatttgTagaggattattcaaacaagt	6	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159116723	C	C	159116723	1	2	49	0	1	0	0	0	0	0	0	0	14017	1653	57	5		5	SCHIP1	3	159116723	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	195984	159116723	38905707	355	53368											
SI	6476	broad.mit.edu	37	chr3	164700808	164700808	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctggtttaaattaaattgTacagataaatataggtctct	6	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164700808	A	A	164700808	2	1	49	1	0	0	0	0	0	0	0	1	14410	1625	57	5		5	SI	3	164700808	Silent	SNP	T	TCGA-17-Z016-01A-01W-0746-08	5584085	164700808	33321622	356	53369											
SLITRK3	22865	broad.mit.edu	37	chr3	164905177	164905177	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcttgcagtttccaggCatgcagcaaactgcattgtt	8	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164905177	A	A	164905177	1	1	49	0	1	0	0	0	0	0	0	0	14858	725	25	3		3	SLITRK3	3	164905177	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	204369	164905177	33117253	357	53370											
NLGN1	22871	broad.mit.edu	37	chr3	173197166	173197166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatatataaacaaacatGggaatgtgttgactctcata	7	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173197166	T	T	173197166	1	4	49	0	1	0	0	0	0	0	0	0	10556	1363	47	2		2	NLGN1	3	173197166	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	8291989	173197166	24825264	358	53371											
NLGN1	22871	broad.mit.edu	37	chr3	173342987	173342987	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagaaaaatgggcagatAaagtagaatggtaaagaagt	12	2	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173342987	G	G	173342987	1	3	49	0	1	0	0	0	0	0	0	0	10556	377	13	5		5	NLGN1	3	173342987	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	145821	173342987	24679443	359	53372											
NAALADL2	254827	broad.mit.edu	37	chr3	175090485	175090485	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacattttatacctgggcAcgttgccatactcaatagaa	6	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175090485	G	G	175090485	1	3	49	0	1	0	0	0	0	0	0	0	10224	174	6	5		5	NAALADL2	3	175090485	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1747498	175090485	22931945	360	53373											
USP13	8975	broad.mit.edu	37	chr3	179481954	179481954	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctattcaggcactacgagcaAcggtgagcatgagagactgt	12	9	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179481954	T	T	179481954	3	4	49	1	0	0	0	0	1	0	0	0	17170	43	2	5	2327	5	USP13	3	179481954	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4391469	179481954	18540476	361	53374											
EIF4G1	1981	broad.mit.edu	37	chr3	184039061	184039061	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgctcattcttccttcctAtggtgcagatgaccggtcac	9	12	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184039061	G	G	184039061	1	3	49	0	1	0	0	0	0	0	0	0	5078	464	16	5		5	EIF4G1	3	184039061	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4557107	184039061	13983369	362	53375											
ST6GAL1	6480	broad.mit.edu	37	chr3	186792136	186792136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttggtgagttcatgtcgGggaaaagaccttgcatgttt	13	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186792136	T	T	186792136	1	4	49	0	1	0	0	0	0	0	0	0	15339	1247	43	2		2	ST6GAL1	3	186792136	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2753075	186792136	11230294	363	53376											
LPP	4026	broad.mit.edu	37	chr3	188122382	188122382	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctctagaggcgatgccgttCaaagtcatgccacttgttgg	12	10	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188122382	T	T	188122382	1	4	49	0	1	0	0	0	0	0	0	0	9010	841	29	4		4	LPP	3	188122382	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1330246	188122382	9900048	364	53377											
FGF12	2257	broad.mit.edu	37	chr3	192113497	192113497	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaccgcagacaacagtgcAgggtataaagcctggggcag	13	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192113497	G	G	192113497	1	3	49	0	1	0	0	0	0	0	0	0	5898	203	7	5		5	FGF12	3	192113497	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3991115	192113497	5908933	365	53378											
LETM1	3954	broad.mit.edu	37	chr4	1827187	1827187	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaggtcacagtgtcgcctCgccaggccggcccagagttt	14	13	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1827187	A	A	1827187	1	1	49	0	1	0	0	0	0	0	0	0	8806	899	31	3		3	LETM1	4	1827187	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08		1827187	189327089	366	53379											
WHSC1	7468	broad.mit.edu	37	chr4	1954929	1954929	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggttggaaacagggcCaggtgctttagcagcatggc	15	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1954929	T	T	1954929	1	4	49	0	1	0	0	0	0	0	0	0	17489	609	21	4		4	WHSC1	4	1954929	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	127742	1954929	189199347	367	53380											
LDB2	9079	broad.mit.edu	37	chr4	16617158	16617158	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacaccacatgttctcgctCataagtgagagttgaacact	7	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16617158	G	G	16617158	1	3	49	0	1	0	0	0	0	0	0	0	8768	841	29	4		4	LDB2	4	16617158	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	14662229	16617158	174537118	368	53381											
SLIT2	9353	broad.mit.edu	37	chr4	20543212	20543212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaatacccatccaggatGtggccattcaggacttcact	8	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20543212	T	T	20543212	3	4	49	1	0	0	0	0	1	0	0	0	14854	1377	48	3	2191	3	SLIT2	4	20543212	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3926054	20543212	170611064	369	53382											
KCNIP4	80333	broad.mit.edu	37	chr4	21625603	21625603	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagggtgggtgatggtgaTatatatactgtatacatgca	13	4	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21625603	C	C	21625603	1	2	49	0	1	0	0	0	0	0	0	0	8112	1421	49	5		5	KCNIP4	4	21625603	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1082391	21625603	169528673	370	53383											
CCDC149	91050	broad.mit.edu	37	chr4	24821148	24821148	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacgggttttcaccatgttGgccaggctggtcttgaactc	12	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24821148	A	A	24821148	1	1	49	0	1	0	0	0	0	0	0	0	2809	1363	47	4		4	CCDC149	4	24821148	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3195545	24821148	166333128	371	53384											
PCDH7	5099	broad.mit.edu	37	chr4	30845112	30845112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgtgagccactccgcctGgcctggaatatagaacttta	11	11	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30845112	T	T	30845112	1	4	49	0	1	0	0	0	0	0	0	0	11610	1363	47	2		2	PCDH7	4	30845112	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6023964	30845112	160309164	372	53385											
ARAP2	116984	broad.mit.edu	37	chr4	36084025	36084025	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaatgcatagacttccAcaagtggtgattcaatgtgt	12	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36084025	G	G	36084025	1	3	49	0	1	0	0	0	0	0	0	0	841	174	6	5		5	ARAP2	4	36084025	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	5238913	36084025	155070251	373	53386											
C4orf19	55286	broad.mit.edu	37	chr4	37502164	37502164	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtttcatatctgattatGtgattgattttagagtatgt	10	2	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37502164	C	C	37502164	1	2	49	0	1	0	0	0	0	0	0	0	2276	1392	48	4		4	C4orf19	4	37502164	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1418139	37502164	153652112	374	53387											
TLR10	81793	broad.mit.edu	37	chr4	38783509	38783509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccattaccttgtttaatccCtcaatgactcaacaaaatgg	4	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38783509	A	A	38783509	1	1	49	0	1	0	0	0	0	0	0	0	16073	696	24	2		2	TLR10	4	38783509	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1281345	38783509	152370767	375	53388											
APBB2	323	broad.mit.edu	37	chr4	40820881	40820881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgccccacctttgcaatcTgctctcccacctcatccttt	3	19	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40820881	C	C	40820881	1	2	49	0	1	0	0	0	0	0	0	0	763	1595	55	5		5	APBB2	4	40820881	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2037372	40820881	150333395	376	53389											
LIMCH1	22998	broad.mit.edu	37	chr4	41649117	41649117	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcaattgctgttgttaatAcagatggactcctataagac	7	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41649117	T	T	41649117	1	4	49	0	1	0	0	0	0	0	0	0	8869	406	14	5		5	LIMCH1	4	41649117	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	828236	41649117	149505159	377	53390											
GABRG1	2565	broad.mit.edu	37	chr4	46066418	46066418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaataaacagcttctaagGttaaaattctatgaaattat	4	4	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066418	T	T	46066418	1	4	49	0	1	0	0	0	0	0	0	0	6231	1276	44	3		3	GABRG1	4	46066418	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4417301	46066418	145087858	378	53391											
COX7B2	170712	broad.mit.edu	37	chr4	46779433	46779433	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagatgaaggcggtggtgGtgaggagagagtgagtgtta	22	1	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46779433	T	T	46779433	1	4	49	0	1	0	0	0	0	0	0	0	3815	1276	44	3		3	COX7B2	4	46779433	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	713015	46779433	144374843	379	53392											
ATP10D	57205	broad.mit.edu	37	chr4	47517775	47517775	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttctccttaggtgtgaccAggacccttttgtggtggtgt	12	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47517775	T	T	47517775	1	4	49	0	1	0	0	0	0	0	0	0	1122	203	7	5		5	ATP10D	4	47517775	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	738342	47517775	143636501	380	53393											
FRYL	285527	broad.mit.edu	37	chr4	48622683	48622683	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttgtgctagaccgaggcCtatattcataagattcatct	7	9	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48622683	T	T	48622683	3	4	49	1	0	0	0	0	1	0	0	0	6124	681	24	4	8990	4	FRYL	4	48622683	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1104908	48622683	142531593	381	53394											
OCIAD2	132299	broad.mit.edu	37	chr4	48909746	48909746	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctcaaaaaaaaaaaaaacAaaaaaaaaacaaaaaacaag	2	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48909746	C	C	48909746	1	2	49	0	1	0	0	0	0	0	0	0	10913	145	5	5		5	OCIAD2	4	48909746	5'Flank	SNP	A	TCGA-17-Z016-01A-01W-0746-08	287063	48909746	142244530	382	53395											
CWH43	80157	broad.mit.edu	37	chr4	49049729	49049729	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggggcggccgaggagggaAggagagagtgtgtgggcagg	25	4	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49049729	T	T	49049729	1	4	49	0	1	0	0	0	0	0	0	0	4106	87	3	5		5	CWH43	4	49049729	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	139983	49049729	142104547	383	53396											
LRRC66	339977	broad.mit.edu	37	chr4	52861973	52861973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctctggcactttttttgCcacagtctgtcaacataagg	8	10	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52861973	A	A	52861973	3	1	49	1	0	0	0	0	1	0	0	0	9105	740	26	3	1431	3	LRRC66	4	52861973	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3812244	52861973	138292303	384	53397											
IGFBP7	3490	broad.mit.edu	37	chr4	57919308	57919308	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctcctgcctcagcctccaGagtagctgatactacaggca	8	14	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57919308	T	T	57919308	1	4	49	0	1	0	0	0	0	0	0	0	7654	957	33	3		3	IGFBP7	4	57919308	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5057335	57919308	133234968	385	53398											
LPHN3	23284	broad.mit.edu	37	chr4	62903591	62903591	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggtaaacaatatttgttCactgaaatgaagtaattctt	6	5	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62903591	T	T	62903591	1	4	49	0	1	0	0	0	0	0	0	0	9004	841	29	4		4	LPHN3	4	62903591	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4984283	62903591	128250685	386	53399											
EPHA5	2044	broad.mit.edu	37	chr4	66189926	66189926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgacaagagtcactccaagcCgtctcaaatccctgcatgaa	7	14	2	2	rs145811811		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66189926	T	T	66189926	3	4	49	1	0	0	0	0	1	0	0	0	5212	652	23	4	97	4	EPHA5	4	66189926	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3286335	66189926	124964350	387	53400											
STAP1	26228	broad.mit.edu	37	chr4	68442838	68442838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatgaattattttttagGctcagtcataattatttatt	5	3	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68442838	T	T	68442838	1	4	49	0	1	0	0	0	0	0	0	0	15370	1218	42	3		3	STAP1	4	68442838	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2252912	68442838	122711438	388	53401											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68735590	68735590	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaggtttaattttatatAgatcttccccattagttcac	4	8	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68735590	G	G	68735590	1	3	49	0	1	0	0	0	0	0	0	0	16364	435	15	5		5	TMPRSS11D	4	68735590	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	292752	68735590	122418686	389	53402											
UGT2B10	7365	broad.mit.edu	37	chr4	69885723	69885723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgaaactacatctttaCagaagtttctaattatgtta	4	5	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69885723	A	A	69885723	3	1	49	1	0	0	0	0	1	0	0	0	17082	465	17	3	2844	3	UGT2B10	4	69885723	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1150133	69885723	121268553	390	53403											
HTN3	3347	broad.mit.edu	37	chr4	70896560	70896560	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctcagtacttatcccaagGatctttcttattccttacgt	4	11	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70896560	T	T	70896560	1	4	49	0	1	0	0	0	0	0	0	0	7505	1189	41	3		3	HTN3	4	70896560	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1010837	70896560	120257716	391	53404											
AMBN	258	broad.mit.edu	37	chr4	71469728	71469728	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagacgtctgccatgaatgTagccaaatgagcatgggact	12	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71469728	C	C	71469728	1	2	49	0	1	0	0	0	0	0	0	0	563	1653	57	5		5	AMBN	4	71469728	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	573168	71469728	119684548	392	53405											
ANKRD17	26057	broad.mit.edu	37	chr4	73958111	73958111	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtacacaaacacacacAcagttttgtgtgtatataca	5	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73958111	T	T	73958111	1	4	49	0	1	0	0	0	0	0	0	0	646	174	6	5		5	ANKRD17	4	73958111	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2488383	73958111	117196165	393	53406											
ART3	419	broad.mit.edu	37	chr4	77021396	77021396	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagcaatagtaactgccagtTcttttgttccattgttaaaa	6	7	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77021396	A	A	77021396	1	1	49	0	1	0	0	0	0	0	0	0	1002	1798	62	5		5	ART3	4	77021396	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3063285	77021396	114132880	394	53407											
ANTXR2	118429	broad.mit.edu	37	chr4	80828115	80828115	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttatttgcttagcctggtGggaaatttcatactctgcct	8	9	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80828115	A	A	80828115	1	1	49	0	1	0	0	0	0	0	0	0	712	1363	47	4		4	ANTXR2	4	80828115	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3806719	80828115	110326161	395	53408											
PTPN13	5783	broad.mit.edu	37	chr4	87687592	87687592	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctaatttttaggtgatcgCgtcctagctgtcaatggagt	11	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87687592	T	T	87687592	2	4	49	1	0	0	0	0	0	0	0	1	12888	755	27	4		4	PTPN13	4	87687592	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6859477	87687592	103466684	396	53409											
AFF1	4299	broad.mit.edu	37	chr4	87956517	87956517	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtcaggagatcgagaccaTcctggctaacatggtgaaac	12	9	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87956517	A	A	87956517	1	1	49	0	1	0	0	0	0	0	0	0	356	1450	50	5		5	AFF1	4	87956517	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	268925	87956517	103197759	397	53410											
AFF1	4299	broad.mit.edu	37	chr4	88029317	88029317	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttgctttgcagtgctccAcagtcccttccagaaccagt	9	13	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88029317	T	T	88029317	2	4	49	1	0	0	0	0	0	0	0	1	356	146	6	5		5	AFF1	4	88029317	Silent	SNP	A	TCGA-17-Z016-01A-01W-0746-08	72800	88029317	103124959	398	53411											
FAM190A	401145	broad.mit.edu	37	chr4	91329690	91329690	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagggtctggagtggacctCcagtaaactccaacagatct	10	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91329690	T	T	91329690	1	4	49	0	1	0	0	0	0	0	0	0	5568	870	30	4		4	FAM190A	4	91329690	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3300373	91329690	99824586	399	53412											
PDLIM5	10611	broad.mit.edu	37	chr4	95427330	95427330	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcagccaagtgtgggaagTactgctctgtaaaacacagt	11	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95427330	C	C	95427330	1	2	49	0	1	0	0	0	0	0	0	0	11777	1653	57	5		5	PDLIM5	4	95427330	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	4097640	95427330	95726946	400	53413											
C4orf37	285555	broad.mit.edu	37	chr4	98737856	98737856	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaatcaatctatcttcctttCcttccttccttccttcctcc	1	17	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98737856	T	T	98737856	1	4	49	0	1	0	0	0	0	0	0	0	2290	870	30	4		4	C4orf37	4	98737856	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3310526	98737856	92416420	401	53414											
NHEDC1	150159	broad.mit.edu	37	chr4	103870629	103870629	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatatatctacatacacataGatgtatacaaacaaaggatc	4	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103870629	T	T	103870629	1	4	49	0	1	0	0	0	0	0	0	0	10495	957	33	3		3	NHEDC1	4	103870629	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5132773	103870629	87283647	402	53415											
DKK2	27123	broad.mit.edu	37	chr4	107956817	107956817	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcaaagggagggaggacCccaacacggggcccctcact	13	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107956817	A	A	107956817	1	1	49	0	1	0	0	0	0	0	0	0	4585	638	22	2		2	DKK2	4	107956817	5'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4086188	107956817	83197459	403	53416											
DKK2	27123	broad.mit.edu	37	chr4	108169640	108169640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaaataattgttcttgGcttctggggttgtggtgaga	15	3	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108169640	T	T	108169640	1	4	49	0	1	0	0	0	0	0	0	0	4585	1218	42	3		3	DKK2	4	108169640	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	212823	108169640	82984636	404	53417											
COL25A1	84570	broad.mit.edu	37	chr4	110084730	110084730	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcaggaattcctgctgcAcaggctgcatggcagatttt	11	11	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110084730	G	G	110084730	1	3	49	0	1	0	0	0	0	0	0	0	3716	174	6	5		5	COL25A1	4	110084730	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1915090	110084730	81069546	405	53418											
ENPEP	2028	broad.mit.edu	37	chr4	111470770	111470770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcgttatttgagcagtGgctaaatgggactgtaaggt	12	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111470770	T	T	111470770	3	4	49	1	0	0	0	0	1	0	0	0	5170	1357	47	2	2374	2	ENPEP	4	111470770	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1386040	111470770	79683506	406	53419											
C4orf21	55345	broad.mit.edu	37	chr4	113510861	113510861	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaatagacagatattagaGcaatgtggtaacgactaccc	9	7	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113510861	A	A	113510861	1	1	49	0	1	0	0	0	0	0	0	0	2277	986	34	4		4	C4orf21	4	113510861	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2040091	113510861	77643415	407	53420											
NDST4	64579	broad.mit.edu	37	chr4	115798995	115798995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgcctgtattcccagCtactcaggaggctgaggcag	12	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115798995	A	A	115798995	1	1	49	0	1	0	0	0	0	0	0	0	10353	812	28	3		3	NDST4	4	115798995	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2288134	115798995	75355281	408	53421											
NDST4	64579	broad.mit.edu	37	chr4	115804843	115804843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtctataacagtggtcCccaacttttttgacaccaag	7	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115804843	A	A	115804843	1	1	49	0	1	0	0	0	0	0	0	0	10353	638	22	2		2	NDST4	4	115804843	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5848	115804843	75349433	409	53422											
ANXA5	308	broad.mit.edu	37	chr4	122589716	122589716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattccattaacctccatgaCtcacagaagccatagaaaat	4	11	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122589716	A	A	122589716	1	1	49	0	1	0	0	0	0	0	0	0	721	580	20	3		3	ANXA5	4	122589716	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6784873	122589716	68564560	410	53423											
TRPC3	7222	broad.mit.edu	37	chr4	122869574	122869574	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attccaccaacactacactaTtacagagtctaatctcagcc	3	14	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122869574	C	C	122869574	1	2	49	0	1	0	0	0	0	0	0	0	16704	1508	52	5		5	TRPC3	4	122869574	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	279858	122869574	68284702	411	53424											
PHF17	79960	broad.mit.edu	37	chr4	129783000	129783000	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagctcacataggaaacccGaggagagtcttggcaagggg	14	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129783000	A	A	129783000	3	1	49	1	0	0	0	0	1	0	0	0	11923	1059	37	4	1153	4	PHF17	4	129783000	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6913426	129783000	61371276	412	53425											
INPP4B	8821	broad.mit.edu	37	chr4	143051518	143051518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactcagtgatttggagaaGgcaggaataaaacagaagta	11	5	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143051518	A	A	143051518	1	1	49	0	1	0	0	0	0	0	0	0	7823	1015	35	4		4	INPP4B	4	143051518	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	13268518	143051518	48102758	413	53426											
INPP4B	8821	broad.mit.edu	37	chr4	143209091	143209091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgagggctctcttcctgGcttgccagtggctgccttct	13	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143209091	T	T	143209091	1	4	49	0	1	0	0	0	0	0	0	0	7823	1218	42	3		3	INPP4B	4	143209091	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	157573	143209091	47945185	414	53427											
HHIP	64399	broad.mit.edu	37	chr4	145629644	145629644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcacactgtcttctattaCtgtgagaagcagattgagaa	9	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145629644	T	T	145629644	1	4	49	0	1	0	0	0	0	0	0	0	7159	580	20	4		4	HHIP	4	145629644	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2420553	145629644	45524632	415	53428											
PRMT10	90826	broad.mit.edu	37	chr4	148601524	148601524	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacttcatcatcaggaaaCagttccaaggcctgctcata	6	12	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148601524	A	A	148601524	2	1	49	1	0	0	0	0	0	0	0	1	12642	465	17	3		3	PRMT10	4	148601524	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2971880	148601524	42552752	416	53429											
PET112L	5188	broad.mit.edu	37	chr4	152626235	152626235	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacctaaaagtggagacGctacgtgcctccttcaaggt	11	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152626235	A	A	152626235	1	1	49	0	1	0	0	0	0	0	0	0	11828	1102	38	4		4	PET112L	4	152626235	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4024711	152626235	38528041	417	53430											
KIAA0922	23240	broad.mit.edu	37	chr4	154504570	154504570	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttgtatgaagattgtcAgcatcccctccatatggtta	8	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154504570	T	T	154504570	1	4	49	0	1	0	0	0	0	0	0	0	8271	203	7	5		5	KIAA0922	4	154504570	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1878335	154504570	36649706	418	53431											
NPY2R	4887	broad.mit.edu	37	chr4	156135259	156135259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagttgttctcatattggcCtactgctccatcatcttgct	6	12	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156135259	A	A	156135259	2	1	49	1	0	0	0	0	0	0	0	1	10704	668	24	2		2	NPY2R	4	156135259	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1630689	156135259	35019017	419	53432											
MARCH1	55016	broad.mit.edu	37	chr4	164880486	164880486	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaacaacaacaacaaaAaaaaaaaacaacaaaaaaac	0	8	0	0	rs146216353		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164880486	C	C	164880486	1	2	49	0	1	0	0	0	0	0	0	0	9390	29	1	5		5	MARCH1	4	164880486	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	8745227	164880486	26273790	420	53433											
MARCH1	55016	broad.mit.edu	37	chr4	165153425	165153425	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatcacacgacatttatgCccattactagaaaacactgc	5	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165153425	A	A	165153425	1	1	49	0	1	0	0	0	0	0	0	0	9390	754	26	3		3	MARCH1	4	165153425	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	272939	165153425	26000851	421	53434											
SPOCK3	50859	broad.mit.edu	37	chr4	167810365	167810365	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgactgagatctgttttcCtaagacacatgcctgatatt	7	8	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167810365	T	T	167810365	3	4	49	1	0	0	0	0	1	0	0	0	15199	690	24	4	820	4	SPOCK3	4	167810365	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2656940	167810365	23343911	422	53435											
SPOCK3	50859	broad.mit.edu	37	chr4	167919624	167919624	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaagtaacgagacagcaTagtggtaaaaagcttagact	11	5	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167919624	G	G	167919624	1	3	49	0	1	0	0	0	0	0	0	0	15199	1421	49	5		5	SPOCK3	4	167919624	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	109259	167919624	23234652	423	53436											
PALLD	23022	broad.mit.edu	37	chr4	169478987	169478987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgagtcagctgtgagcaGggggattccctcctgctgtt	14	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169478987	T	T	169478987	1	4	49	0	1	0	0	0	0	0	0	0	11501	1015	35	2		2	PALLD	4	169478987	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1559363	169478987	21675289	424	53437											
PALLD	23022	broad.mit.edu	37	chr4	169519568	169519568	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagctgacttaatattccAggaaacatttctgtgattgg	8	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169519568	T	T	169519568	1	4	49	0	1	0	0	0	0	0	0	0	11501	203	7	5		5	PALLD	4	169519568	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	40581	169519568	21634708	425	53438											
GALNTL6	442117	broad.mit.edu	37	chr4	172940000	172940000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcctttcctgagggccCctgtgagatatagtcaggga	14	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172940000	A	A	172940000	1	1	49	0	1	0	0	0	0	0	0	0	6287	638	22	2		2	GALNTL6	4	172940000	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3420432	172940000	18214276	426	53439											
GALNTL6	442117	broad.mit.edu	37	chr4	173899666	173899666	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatatggcagactgcaacaGagttgaaatgcgttgttctt	10	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173899666	A	A	173899666	1	1	49	0	1	0	0	0	0	0	0	0	6287	957	33	4		4	GALNTL6	4	173899666	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	959666	173899666	17254610	427	53440											
ADAM29	11086	broad.mit.edu	37	chr4	175897362	175897362	+	Frame_Shift_Del	DEL	T	-	-													ggaggatctatatgttattgTtaatatagtggattccattt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	175897362	-	-	175897362	7	5	49	1	0	1	0	1	0	0	0	0	247	1725	60	0	688	0	ADAM29	4	175897362	Frame_Shift_Del	DEL	T	TCGA-17-Z016-01A-01W-0746-08	1997696	175897362	15256914	428	53441											
STOX2	56977	broad.mit.edu	37	chr4	184910653	184910653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgagccactgtgcccggCctcgacattttttcttacca	9	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184910653	A	A	184910653	1	1	49	0	1	0	0	0	0	0	0	0	15438	754	26	3		3	STOX2	4	184910653	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	9013291	184910653	6243623	429	53442											
SORBS2	8470	broad.mit.edu	37	chr4	186859995	186859995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccctgtacacatgcctGgcaatacaccagtctgttta	6	15	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186859995	T	T	186859995	1	4	49	0	1	0	0	0	0	0	0	0	15042	1363	47	2		2	SORBS2	4	186859995	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1949342	186859995	4294281	430	53443											
BRD9	65980	broad.mit.edu	37	chr5	881275	881275	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagagcaggctcccgtccCcgttcctcttcagatagccc	9	16	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	881275	T	T	881275	3	4	49	1	0	0	0	0	1	0	0	0	1516	623	22	4	836	4	BRD9	5	881275	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08		881275	180033985	431	53444											
TERT	7015	broad.mit.edu	37	chr5	1264756	1264756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcggggccgtcacccaGgaggtaacctgacacccttg	14	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1264756	T	T	1264756	1	4	49	0	1	0	0	0	0	0	0	0	15886	1015	35	2		2	TERT	5	1264756	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	383481	1264756	179650504	432	53445											
CLPTM1L	81037	broad.mit.edu	37	chr5	1321654	1321654	+	Intron	DEL	G	-	-													gacaggtgcagatgcactctGggcagagatggccccagtaa							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1321654	-	-	1321654	6	5	49	0	1	1	0	1	0	0	0	0	3587	1363	47	0		0	CLPTM1L	5	1321654	Intron	DEL	G	TCGA-17-Z016-01A-01W-0746-08	56898	1321654	179593606	433	53446											
ADAMTS16	170690	broad.mit.edu	37	chr5	5318483	5318483	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggggggcctggagttagGgtcttgcgtctgatctacct	15	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5318483	A	A	5318483	1	1	49	0	1	0	0	0	0	0	0	0	261	1247	43	4		4	ADAMTS16	5	5318483	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3996829	5318483	175596777	434	53447											
ADCY2	108	broad.mit.edu	37	chr5	7745425	7745425	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtaagcactttgtcctcTgtgccttatacctttgcaaa	6	11	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7745425	C	C	7745425	1	2	49	0	1	0	0	0	0	0	0	0	294	1595	55	5		5	ADCY2	5	7745425	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2426942	7745425	173169835	435	53448											
ADCY2	108	broad.mit.edu	37	chr5	7789700	7789700	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctctttaaaacctccactCtctggcaggacaagatgcct	6	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7789700	T	T	7789700	1	4	49	0	1	0	0	0	0	0	0	0	294	928	32	4		4	ADCY2	5	7789700	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	44275	7789700	173125560	436	53449											
CTNND2	1501	broad.mit.edu	37	chr5	11022947	11022947	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggcatcccgtaaggccttgGcgttctccatgttcttggta	11	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11022947	C	C	11022947	3	2	49	1	0	0	0	0	1	0	0	0	4054	1203	42	4	768	4	CTNND2	5	11022947	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3233247	11022947	169892313	437	53450											
CTNND2	1501	broad.mit.edu	37	chr5	11078009	11078009	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacgagtcaaagaagacgccAaggtgtctgtcccaggtctc	11	11	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11078009	T	T	11078009	1	4	49	0	1	0	0	0	0	0	0	0	4054	145	5	5		5	CTNND2	5	11078009	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	55062	11078009	169837251	438	53451											
CTNND2	1501	broad.mit.edu	37	chr5	11082684	11082684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggacagcagaaaaaatgaGgctgctaataaatgcacggc	11	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11082684	T	T	11082684	1	4	49	0	1	0	0	0	0	0	0	0	4054	1015	35	2		2	CTNND2	5	11082684	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4675	11082684	169832576	439	53452											
CTNND2	1501	broad.mit.edu	37	chr5	11117550	11117550	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacatgtttaatctatgccAgcacaaccaaccttgctatc	4	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11117550	G	G	11117550	1	3	49	0	1	0	0	0	0	0	0	0	4054	203	7	5		5	CTNND2	5	11117550	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	34866	11117550	169797710	440	53453											
CTNND2	1501	broad.mit.edu	37	chr5	11346664	11346664	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccctctggaaggtggccGcggcggcattctgtgggccg	18	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11346664	A	A	11346664	3	1	49	1	0	0	0	0	1	0	0	0	4054	1087	38	4	2285	4	CTNND2	5	11346664	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	229114	11346664	169568596	441	53454											
CTNND2	1501	broad.mit.edu	37	chr5	11653728	11653728	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaatattgaattatatgagCtctgttatatattttggata	6	2	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11653728	G	G	11653728	1	3	49	0	1	0	0	0	0	0	0	0	4054	812	28	4		4	CTNND2	5	11653728	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	307064	11653728	169261532	442	53455											
CTNND2	1501	broad.mit.edu	37	chr5	11780300	11780300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggatcttcaagtcacacaCcgtgtcatcccctagagtgc	9	13	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11780300	A	A	11780300	1	1	49	0	1	0	0	0	0	0	0	0	4054	522	18	3		3	CTNND2	5	11780300	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	126572	11780300	169134960	443	53456											
MARCH11	441061	broad.mit.edu	37	chr5	16177940	16177940	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattttagcaggcacagctgAtgtgtataccgaactgaccc	9	11	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16177940	C	C	16177940	3	2	49	1	0	0	0	0	1	0	0	0	9392	330	12	5	632	5	MARCH11	5	16177940	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4397640	16177940	164737320	444	53457											
CDH18	1016	broad.mit.edu	37	chr5	19473541	19473541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgctagggtctaggtctgCttctgccagtctttgcttaa	10	10	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473541	T	T	19473541	3	4	49	1	0	0	0	0	1	0	0	0	3133	797	28	4	209	4	CDH18	5	19473541	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3295601	19473541	161441719	445	53458											
CDH18	1016	broad.mit.edu	37	chr5	19565891	19565891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgaagagagtacgttgGgaaaactctgctggacattc	11	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19565891	T	T	19565891	1	4	49	0	1	0	0	0	0	0	0	0	3133	1247	43	2		2	CDH18	5	19565891	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	92350	19565891	161349369	446	53459											
CDH18	1016	broad.mit.edu	37	chr5	19612766	19612766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataataagcaagtatcaaCaaacatacacatacatattt	2	7	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19612766	A	A	19612766	1	1	49	0	1	0	0	0	0	0	0	0	3133	493	17	3		3	CDH18	5	19612766	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	46875	19612766	161302494	447	53460											
CDH18	1016	broad.mit.edu	37	chr5	19980160	19980160	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgatatgattgtttacctaGaaaaccttaaagactactcc	5	8	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19980160	C	C	19980160	1	2	49	0	1	0	0	0	0	0	0	0	3133	957	33	4		4	CDH18	5	19980160	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	367394	19980160	160935100	448	53461											
CDH12	1010	broad.mit.edu	37	chr5	22829790	22829790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttctatttctgttctcaCaatgagatacttctacccca	3	12	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22829790	A	A	22829790	1	1	49	0	1	0	0	0	0	0	0	0	3128	493	17	3		3	CDH12	5	22829790	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2849630	22829790	158085470	449	53462											
CDH12	1010	broad.mit.edu	37	chr5	22833640	22833640	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctaattgcatagcaaaaTattttcacttaactatcaag	4	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22833640	C	C	22833640	1	2	49	0	1	0	0	0	0	0	0	0	3128	1421	49	5		5	CDH12	5	22833640	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3850	22833640	158081620	450	53463											
CDH9	1007	broad.mit.edu	37	chr5	26902619	26902619	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggcatctggatcgtatgCtgtaacctgtccaatgatac	9	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26902619	T	T	26902619	3	4	49	1	0	0	0	0	1	0	0	0	3147	797	28	4	1174	4	CDH9	5	26902619	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4068979	26902619	154012641	451	53464											
CDH9	1007	broad.mit.edu	37	chr5	26922199	26922199	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaaggatgtctacaagatCtagaaaactgcctcaaaagg	9	7	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26922199	A	A	26922199	1	1	49	0	1	0	0	0	0	0	0	0	3147	928	32	3		3	CDH9	5	26922199	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	19580	26922199	153993061	452	53465											
PDZD2	23037	broad.mit.edu	37	chr5	31679642	31679642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatttattttcgagacagGgtcttgctgttgcccaggct	10	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31679642	T	T	31679642	1	4	49	0	1	0	0	0	0	0	0	0	11795	1247	43	2		2	PDZD2	5	31679642	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4757443	31679642	149235618	453	53466											
ADAMTS12	81792	broad.mit.edu	37	chr5	33557616	33557616	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatccatatgaaaaagggGtctccaactacttgaagcta	8	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33557616	A	A	33557616	1	1	49	0	1	0	0	0	0	0	0	0	257	1276	44	4		4	ADAMTS12	5	33557616	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1877974	33557616	147357644	454	53467											
ADAMTS12	81792	broad.mit.edu	37	chr5	33654979	33654979	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggcgtatgtgggtgattTtgtgtgtgtgtgtgtgtgtg	18	2	0	1	rs148735809	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33654979	G	G	33654979	1	3	49	0	1	0	0	0	0	0	0	0	257	1856	64	5		5	ADAMTS12	5	33654979	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	97363	33654979	147260281	455	53468											
ADAMTS12	81792	broad.mit.edu	37	chr5	33780980	33780980	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaacatttcagaaagctcCtgatggtcatgcagcaggag	11	9	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33780980	T	T	33780980	1	4	49	0	1	0	0	0	0	0	0	0	257	696	24	4		4	ADAMTS12	5	33780980	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	126001	33780980	147134280	456	53469											
UGT3A1	133688	broad.mit.edu	37	chr5	35991213	35991213	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgcggggatccgggaCgcgcctgtctgggaattctc	17	11	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35991213	T	T	35991213	1	4	49	0	1	0	0	0	0	0	0	0	17089	551	19	4		4	UGT3A1	5	35991213	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2210233	35991213	144924047	457	53470											
RANBP3L	202151	broad.mit.edu	37	chr5	36265170	36265170	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagctgcaaaatagcaggtCtaataacatgtttagaatgt	9	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36265170	A	A	36265170	3	1	49	1	0	0	0	0	1	0	0	0	13138	913	32	3	1062	3	RANBP3L	5	36265170	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	273957	36265170	144650090	458	53471											
EGFLAM	133584	broad.mit.edu	37	chr5	38464048	38464048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttccctcgtggaagatgCcgtggatgggaaaaacatca	11	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38464048	A	A	38464048	3	1	49	1	0	0	0	0	1	0	0	0	5006	739	26	3	3090	3	EGFLAM	5	38464048	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2198878	38464048	142451212	459	53472											
DAB2	1601	broad.mit.edu	37	chr5	39388698	39388698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagattagattcaggtgtggCtactaaaaagattacttttc	8	5	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39388698	A	A	39388698	1	1	49	0	1	0	0	0	0	0	0	0	4251	812	28	3		3	DAB2	5	39388698	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	924650	39388698	141526562	460	53473											
PTGER4	5734	broad.mit.edu	37	chr5	40681904	40681904	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcgggcgccgagatccagaTggtcatcttactcattgcca	11	13	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40681904	A	A	40681904	3	1	49	1	0	0	0	0	1	0	0	0	12851	1464	51	5	811	5	PTGER4	5	40681904	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1293206	40681904	140233356	461	53474											
HEATR7B2	133558	broad.mit.edu	37	chr5	41010047	41010047	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaaggcagaggcttctgTaaaaggttgacaacaactgt	10	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41010047	G	G	41010047	3	3	49	1	0	0	0	0	1	0	0	0	7102	1635	57	5	1535	5	HEATR7B2	5	41010047	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	328143	41010047	139905213	462	53475											
HEATR7B2	133558	broad.mit.edu	37	chr5	41039318	41039318	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggtagagggacaaacttaGgcacatgcagagcgcattta	12	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41039318	C	C	41039318	1	2	49	0	1	0	0	0	0	0	0	0	7102	1015	35	4		4	HEATR7B2	5	41039318	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	29271	41039318	139875942	463	53476											
GHR	2690	broad.mit.edu	37	chr5	42428536	42428536	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgccataaaggcctctgAcatgttctggagacattttc	10	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42428536	G	G	42428536	1	3	49	0	1	0	0	0	0	0	0	0	6435	290	10	5		5	GHR	5	42428536	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1389218	42428536	138486724	464	53477											
GHR	2690	broad.mit.edu	37	chr5	42699873	42699873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgagaagaatgccttccAttaatattaaattgtgtctg	7	6	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42699873	G	G	42699873	1	3	49	0	1	0	0	0	0	0	0	0	6435	232	8	5		5	GHR	5	42699873	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	271337	42699873	138215387	465	53478											
MGC42105	167359	broad.mit.edu	37	chr5	43210666	43210666	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggagtcagagacttcaCagagggacagagacttggag	17	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43210666	T	T	43210666	1	4	49	0	1	0	0	0	0	0	0	0	9645	493	17	4		4	MGC42105	5	43210666	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	510793	43210666	137704594	466	53479											
HCN1	348980	broad.mit.edu	37	chr5	45498434	45498434	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttctcgcttcatttcattCatttcatgttccatcgctga	4	12	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45498434	T	T	45498434	1	4	49	0	1	0	0	0	0	0	0	0	7062	841	29	4		4	HCN1	5	45498434	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2287768	45498434	135416826	467	53480											
ITGA1	3672	broad.mit.edu	37	chr5	52223297	52223297	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgcctcttccagctaaatCgagacaaaaatagtggcaag	9	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52223297	A	A	52223297	1	1	49	0	1	0	0	0	0	0	0	0	7942	899	31	3		3	ITGA1	5	52223297	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6724863	52223297	128691963	468	53481											
SLC38A9	153129	broad.mit.edu	37	chr5	54960566	54960566	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaatttgacataagcaCccaataaactatcattgctc	4	9	1	2	rs141328492		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54960566	T	T	54960566	3	4	49	1	0	0	0	0	1	0	0	0	14725	507	18	4	1069	4	SLC38A9	5	54960566	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2737269	54960566	125954694	469	53482											
SLC38A9	153129	broad.mit.edu	37	chr5	54968640	54968640	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgcacaaaggcaaggcaTtgacttctcacttttggtgc	11	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54968640	C	C	54968640	1	2	49	0	1	0	0	0	0	0	0	0	14725	1508	52	5		5	SLC38A9	5	54968640	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	8074	54968640	125946620	470	53483											
MIER3	166968	broad.mit.edu	37	chr5	56267018	56267018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgagcctgctttcctgGggtgaaattcaaatacactt	8	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56267018	T	T	56267018	1	4	49	0	1	0	0	0	0	0	0	0	9675	1247	43	2		2	MIER3	5	56267018	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1298378	56267018	124648242	471	53484											
IPO11	51194	broad.mit.edu	37	chr5	61847905	61847905	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcttgcagtgagtggagatCatgccactgcactccagcct	11	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61847905	A	A	61847905	1	1	49	0	1	0	0	0	0	0	0	0	7863	841	29	3		3	IPO11	5	61847905	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5580887	61847905	119067355	472	53485											
RGS7BP	401190	broad.mit.edu	37	chr5	63872993	63872993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaatcttggccaggcaCggtggctcacgcctgtaatc	10	13	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63872993	A	A	63872993	1	1	49	0	1	0	0	0	0	0	0	0	13420	551	19	3		3	RGS7BP	5	63872993	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2025088	63872993	117042267	473	53486											
BDP1	55814	broad.mit.edu	37	chr5	70837343	70837343	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccatattccttctagcctaGataatgtaaatcacaaaatt	4	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70837343	C	C	70837343	3	2	49	1	0	0	0	0	1	0	0	0	1400	942	33	4	6199	4	BDP1	5	70837343	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6964350	70837343	110077917	474	53487											
SV2C	22987	broad.mit.edu	37	chr5	75559212	75559212	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagatgggtctcctgaataGagcacactgataggtcttga	12	7	2	5	rs144299605	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75559212	T	T	75559212	1	4	49	0	1	0	0	0	0	0	0	0	15537	957	33	3		3	SV2C	5	75559212	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4721869	75559212	105356048	475	53488											
CRHBP	1393	broad.mit.edu	37	chr5	76259266	76259266	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcctttagctgatctctgCtacccctttcatggcccggg	9	15	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76259266	T	T	76259266	2	4	49	1	0	0	0	0	0	0	0	1	3902	805	28	4		4	CRHBP	5	76259266	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	700054	76259266	104655994	476	53489											
PDE8B	8622	broad.mit.edu	37	chr5	76679709	76679709	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttttggttactgtagCcttgtagtatagtttgaagt	11	4	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76679709	G	G	76679709	1	3	49	0	1	0	0	0	0	0	0	0	11748	754	26	4		4	PDE8B	5	76679709	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	420443	76679709	104235551	477	53490											
WDR41	55255	broad.mit.edu	37	chr5	76734496	76734496	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagctagcagcctggccctgCagtggaagctgttgagggat	15	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76734496	T	T	76734496	1	4	49	0	1	0	0	0	0	0	0	0	17421	725	25	4		4	WDR41	5	76734496	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	54787	76734496	104180764	478	53491											
WDR41	55255	broad.mit.edu	37	chr5	76745546	76745546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggttgtgttaacaagCacaaaactgtacataataaa	8	6	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76745546	A	A	76745546	1	1	49	0	1	0	0	0	0	0	0	0	17421	725	25	3		3	WDR41	5	76745546	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	11050	76745546	104169714	479	53492											
DMGDH	29958	broad.mit.edu	37	chr5	78349865	78349865	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagcctatcttgtaagttaCccaaattccaaaattaatca	3	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78349865	G	G	78349865	1	3	49	0	1	0	0	0	0	0	0	0	4621	522	18	4		4	DMGDH	5	78349865	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1604319	78349865	102565395	480	53493											
EDIL3	10085	broad.mit.edu	37	chr5	83288348	83288348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgaggaagagaagaaggCaagcaaataaacagttggaa	13	5	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83288348	A	A	83288348	1	1	49	0	1	0	0	0	0	0	0	0	4955	725	25	3		3	EDIL3	5	83288348	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4938483	83288348	97626912	481	53494											
GPR98	84059	broad.mit.edu	37	chr5	89953780	89953780	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgacagatttacaggtctGatgcaggatgtgaggtccta	12	6	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89953780	T	T	89953780	2	4	49	1	0	0	0	0	0	0	0	1	6787	1277	45	3		3	GPR98	5	89953780	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6665432	89953780	90961480	482	53495											
MCTP1	79772	broad.mit.edu	37	chr5	94161657	94161657	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaataatcatggtaggCaacttagatcattcttctaa	6	6	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94161657	T	T	94161657	1	4	49	0	1	0	0	0	0	0	0	0	9493	725	25	4		4	MCTP1	5	94161657	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4207877	94161657	86753603	483	53496											
SLCO6A1	133482	broad.mit.edu	37	chr5	101810596	101810596	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccattaggatggtcactatCagaaaaacaaacaaacaaac	5	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101810596	G	G	101810596	1	3	49	0	1	0	0	0	0	0	0	0	14846	841	29	4		4	SLCO6A1	5	101810596	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7648939	101810596	79104664	484	53497											
CAMK4	814	broad.mit.edu	37	chr5	110571727	110571727	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccctgcctctttgggcaTaaagccccgcacctcactca	8	18	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110571727	C	C	110571727	1	2	49	0	1	0	0	0	0	0	0	0	2631	1421	49	5		5	CAMK4	5	110571727	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	8761131	110571727	70343533	485	53498											
CAMK4	814	broad.mit.edu	37	chr5	110711112	110711112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggctttgtccagacagCctctgaggcaaagatctagt	10	10	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110711112	A	A	110711112	1	1	49	0	1	0	0	0	0	0	0	0	2631	754	26	3		3	CAMK4	5	110711112	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	139385	110711112	70204148	486	53499											
APC	324	broad.mit.edu	37	chr5	112060405	112060405	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgggtccacattatctAggtgaaaaagcagatgtaag	10	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112060405	C	C	112060405	1	2	49	0	1	0	0	0	0	0	0	0	765	435	15	5		5	APC	5	112060405	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1349293	112060405	68854855	487	53500											
KCNN2	3781	broad.mit.edu	37	chr5	113831781	113831781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctcagatggagagctacGacaagcacgtcacttacaat	10	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113831781	T	T	113831781	3	4	49	1	0	0	0	0	1	0	0	0	8149	1058	37	3	1672	3	KCNN2	5	113831781	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1771376	113831781	67083479	488	53501											
AQPEP	206338	broad.mit.edu	37	chr5	115309817	115309817	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcatagtagaaagttcttTgcttttactacttcatctag	5	8	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115309817	A	A	115309817	1	1	49	0	1	0	0	0	0	0	0	0	836	1827	63	5		5	AQPEP	5	115309817	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1478036	115309817	65605443	489	53502											
SEMA6A	57556	broad.mit.edu	37	chr5	115803247	115803247	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacttttccctccctctccCccgagaggaagaggcatttc	7	17	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115803247	T	T	115803247	1	4	49	0	1	0	0	0	0	0	0	0	14152	638	22	4		4	SEMA6A	5	115803247	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	493430	115803247	65112013	490	53503											
PRR16	51334	broad.mit.edu	37	chr5	119920663	119920663	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaactcctctcctctgatttCaagcccctggtctttctgcc	5	16	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119920663	G	G	119920663	1	3	49	0	1	0	0	0	0	0	0	0	12695	841	29	4		4	PRR16	5	119920663	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4117416	119920663	60994597	491	53504											
CEP120	153241	broad.mit.edu	37	chr5	122736929	122736929	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcctggtactcacgcagcTgccacgccatgtcctgcttg	10	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122736929	G	G	122736929	1	3	49	0	1	0	0	0	0	0	0	0	3276	1595	55	5		5	CEP120	5	122736929	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2816266	122736929	58178331	492	53505											
ZNF608	57507	broad.mit.edu	37	chr5	124003225	124003225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagaagatctacaagtagCagggtcttcgatgttgaaat	11	5	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124003225	A	A	124003225	1	1	49	0	1	0	0	0	0	0	0	0	18161	725	25	3		3	ZNF608	5	124003225	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1266296	124003225	56912035	493	53506											
FBN2	2201	broad.mit.edu	37	chr5	127597349	127597349	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgattaacttcagtgaggctGaaaacgacgtgaactgcact	10	8	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127597349	A	A	127597349	1	1	49	0	1	0	0	0	0	0	0	0	5760	1305	45	4		4	FBN2	5	127597349	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3594124	127597349	53317911	494	53507											
FBN2	2201	broad.mit.edu	37	chr5	127645716	127645716	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacctgcatgtactcaggtGggcaaatgcaggtgtaattt	12	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127645716	A	A	127645716	3	1	49	1	0	0	0	0	1	0	0	0	5760	1348	47	4	3683	4	FBN2	5	127645716	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	48367	127645716	53269544	495	53508											
FBN2	2201	broad.mit.edu	37	chr5	127671313	127671313	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattgtcaggtctgcttcctTaaaaggagttttcttctttt	7	8	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127671313	A	A	127671313	1	1	49	0	1	0	0	0	0	0	0	0	5760	1769	61	5		5	FBN2	5	127671313	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	25597	127671313	53243947	496	53509											
ADAMTS19	171019	broad.mit.edu	37	chr5	129030720	129030720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagcaaggtagcaaggCcaagattttccacttaagga	10	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129030720	A	A	129030720	1	1	49	0	1	0	0	0	0	0	0	0	264	754	26	3		3	ADAMTS19	5	129030720	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1359407	129030720	51884540	497	53510											
ACSL6	23305	broad.mit.edu	37	chr5	131323979	131323979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcatgagtgcaggcagCatgtgccaggcagcacatgc	14	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131323979	A	A	131323979	1	1	49	0	1	0	0	0	0	0	0	0	181	725	25	3		3	ACSL6	5	131323979	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2293259	131323979	49591281	498	53511											
RAD50	10111	broad.mit.edu	37	chr5	131926800	131926800	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctcttgttggatgcAaacagtaatatttggaacat	7	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131926800	G	G	131926800	1	3	49	0	1	0	0	0	0	0	0	0	13092	145	5	5		5	RAD50	5	131926800	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	602821	131926800	48988460	499	53512											
CDKL3	51265	broad.mit.edu	37	chr5	133681167	133681167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctttcactcgtgtccGtgtgaagagaccaccaaaca	9	13	1	2	rs139802163	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133681167	A	A	133681167	1	1	49	0	1	0	0	0	0	0	0	0	3185	1160	40	4		4	CDKL3	5	133681167	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1754367	133681167	47234093	500	53513											
SPOCK1	6695	broad.mit.edu	37	chr5	136426706	136426706	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacaagagaaatgaaaatGgggccacaggatcctctgtg	12	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136426706	A	A	136426706	1	1	49	0	1	0	0	0	0	0	0	0	15197	1363	47	4		4	SPOCK1	5	136426706	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2745539	136426706	44488554	501	53514											
SPOCK1	6695	broad.mit.edu	37	chr5	136816791	136816791	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggtttatttgggtgacaGattcttctgcatcattctcc	9	8	4	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136816791	T	T	136816791	1	4	49	0	1	0	0	0	0	0	0	0	15197	957	33	3		3	SPOCK1	5	136816791	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	390085	136816791	44098469	502	53515											
MYOT	9499	broad.mit.edu	37	chr5	137114033	137114033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctcctgacctcatgatcCgcctgcctggccctcccaaa	7	18	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137114033	A	A	137114033	1	1	49	0	1	0	0	0	0	0	0	0	10188	667	23	1		1	MYOT	5	137114033	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	297242	137114033	43801227	503	53516											
SIL1	64374	broad.mit.edu	37	chr5	138428620	138428620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtcatgagggctttgccCtcatgaatgattaatgtcac	10	8	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138428620	A	A	138428620	1	1	49	0	1	0	0	0	0	0	0	0	14434	696	24	2		2	SIL1	5	138428620	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1314587	138428620	42486640	504	53517											
PCDHA7	56141	broad.mit.edu	37	chr5	140215064	140215064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagaggacgcccaaccaGgtaccgtcatcacattgatt	8	13	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140215064	T	T	140215064	3	4	49	1	0	0	0	0	1	0	0	0	11623	1000	35	2	1098	2	PCDHA7	5	140215064	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1786444	140215064	40700196	505	53518											
PCDHB5	26167	broad.mit.edu	37	chr5	140515335	140515335	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccctgtatattgcatttcCagctcttactagaaaatcca	4	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140515335	T	T	140515335	4	4	49	1	0	0	0	0	0	1	0	0	11639	595	21	4	321	4	PCDHB5	5	140515335	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	300271	140515335	40399925	506	53519											
PCDHB9	56127	broad.mit.edu	37	chr5	140568929	140568929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggaggcggccccggccCaggcccaggccgacttgctc	14	19	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140568929	A	A	140568929	3	1	49	1	0	0	0	0	1	0	0	0	11643	581	21	2	2039	2	PCDHB9	5	140568929	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	53594	140568929	40346331	507	53520											
PCDHB11	56125	broad.mit.edu	37	chr5	140580573	140580573	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggaaacagagagaccacTggacagagagagcacagccg	14	9	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140580573	C	C	140580573	3	2	49	1	0	0	0	0	1	0	0	0	11630	1580	55	5	1228	5	PCDHB11	5	140580573	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	11644	140580573	40334687	508	53521											
PCDHGA1	56114	broad.mit.edu	37	chr5	140710332	140710332	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgctgttggaagctggGgctgggaatattcactactc	14	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140710332	T	T	140710332	2	4	49	1	0	0	0	0	0	0	0	1	11644	1219	43	2		2	PCDHGA1	5	140710332	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	129759	140710332	40204928	509	53522											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744199	140744200	+	Frame_Shift_Del	DEL	TG	-	-													gctctgcgctcagagcccacTgtgtgtggtgaactttaaca							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140744200	-	-	140744199	7	5	49	1	0	1	0	1	0	0	0	0	11651	1580	55	0	304	0	PCDHGA5	5	140744199	Frame_Shift_Del	DEL	TG	TCGA-17-Z016-01A-01W-0746-08	33867	140744199	40171061	510	53523											
PCDHGA7	56108	broad.mit.edu	37	chr5	140764329	140764329	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactctttgcggttgggctGtacacgggcgaggtgcgcac	17	10	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140764329	T	T	140764329	2	4	49	1	0	0	0	0	0	0	0	1	11653	1364	48	3		3	PCDHGA7	5	140764329	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	20130	140764329	40150931	511	53524											
ARHGAP26	23092	broad.mit.edu	37	chr5	142470429	142470429	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtctttatcgaaatctcCccagattaaatggtcccaat	8	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142470429	T	T	142470429	1	4	49	0	1	0	0	0	0	0	0	0	877	638	22	4		4	ARHGAP26	5	142470429	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1706100	142470429	38444831	512	53525											
NR3C1	2908	broad.mit.edu	37	chr5	142816444	142816444	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacaatgcatttagaatgcTgtcctccttcttgaagtttt	7	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142816444	A	A	142816444	1	1	49	0	1	0	0	0	0	0	0	0	10725	1595	55	5		5	NR3C1	5	142816444	5'Flank	SNP	T	TCGA-17-Z016-01A-01W-0746-08	346015	142816444	38098816	513	53526											
PPP2R2B	5521	broad.mit.edu	37	chr5	146091238	146091238	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatacatctgagatgaaagGactcgatttaatgaatgcct	8	6	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146091238	T	T	146091238	1	4	49	0	1	0	0	0	0	0	0	0	12486	1189	41	3		3	PPP2R2B	5	146091238	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3274794	146091238	34824022	514	53527											
PPP2R2B	5521	broad.mit.edu	37	chr5	146099443	146099443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaatgaagattggcaaCatcaagctggcattcccata	8	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146099443	A	A	146099443	1	1	49	0	1	0	0	0	0	0	0	0	12486	493	17	3		3	PPP2R2B	5	146099443	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8205	146099443	34815817	515	53528											
PPP2R2B	5521	broad.mit.edu	37	chr5	146404594	146404594	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caataaaattgattaacctcTagttggactaatgaaggaaa	7	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146404594	C	C	146404594	1	2	49	0	1	0	0	0	0	0	0	0	12486	1537	53	5		5	PPP2R2B	5	146404594	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	305151	146404594	34510666	516	53529											
SH3TC2	79628	broad.mit.edu	37	chr5	148083880	148083880	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaaatggccatagagtcAaaagcaatctgcaaattcaa	8	7	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148083880	T	T	148083880	1	4	49	0	1	0	0	0	0	0	0	0	14375	145	5	5		5	SH3TC2	5	148083880	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1679286	148083880	32831380	517	53530											
PPARGC1B	133522	broad.mit.edu	37	chr5	149210434	149210434	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagatctaaaagtcaacgGccttgtgttaaggtatttct	8	8	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149210434	T	T	149210434	2	4	49	1	0	0	0	0	0	0	0	1	12397	1190	42	3		3	PPARGC1B	5	149210434	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1126554	149210434	31704826	518	53531											
PDE6A	5145	broad.mit.edu	37	chr5	149283770	149283770	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgagccgagatcgtgccActgcactccagcctgagcga	12	14	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149283770	T	T	149283770	1	4	49	0	1	0	0	0	0	0	0	0	11739	174	6	5		5	PDE6A	5	149283770	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	73336	149283770	31631490	519	53532											
ARSI	340075	broad.mit.edu	37	chr5	149677693	149677693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccatgcaggtcaccatgGccgcgtacttccgccgggcc	11	17	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149677693	T	T	149677693	3	4	49	1	0	0	0	0	1	0	0	0	998	1203	42	3	919	3	ARSI	5	149677693	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	393923	149677693	31237567	520	53533											
SPARC	6678	broad.mit.edu	37	chr5	151049415	151049415	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgataccaatatccttgtcCatttcagagatggggacact	8	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151049415	T	T	151049415	1	4	49	0	1	0	0	0	0	0	0	0	15111	609	21	4		4	SPARC	5	151049415	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1371722	151049415	29865845	521	53534											
GRIA1	2890	broad.mit.edu	37	chr5	152961473	152961473	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactacaggcacatgtcaccAcgcccggctaatttttgtat	8	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152961473	T	T	152961473	1	4	49	0	1	0	0	0	0	0	0	0	6833	174	6	5		5	GRIA1	5	152961473	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1912058	152961473	27953787	522	53535											
GRIA1	2890	broad.mit.edu	37	chr5	153028612	153028612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagtcagtgtcagagtgGtgcaatgtgagaaagacgac	15	5	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153028612	T	T	153028612	1	4	49	0	1	0	0	0	0	0	0	0	6833	1276	44	3		3	GRIA1	5	153028612	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	67139	153028612	27886648	523	53536											
SGCD	6444	broad.mit.edu	37	chr5	155372985	155372985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggagcatgaagggaggtGgatggatcggagagatatac	19	3	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155372985	T	T	155372985	1	4	49	0	1	0	0	0	0	0	0	0	14314	1363	47	2		2	SGCD	5	155372985	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2344373	155372985	25542275	524	53537											
SGCD	6444	broad.mit.edu	37	chr5	155457717	155457717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagtagtcatttccataGggggttgtgggcctattgag	15	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155457717	T	T	155457717	1	4	49	0	1	0	0	0	0	0	0	0	14314	1015	35	2		2	SGCD	5	155457717	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	84732	155457717	25457543	525	53538											
SGCD	6444	broad.mit.edu	37	chr5	155771558	155771558	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggctctgtggggccacaGgtatacaaggtggggattta	15	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155771558	A	A	155771558	2	1	49	1	0	0	0	0	0	0	0	1	14314	991	35	4		4	SGCD	5	155771558	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	313841	155771558	25143702	526	53539											
TIMD4	91937	broad.mit.edu	37	chr5	156346442	156346442	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggagtgtcatgcccccatCctcaatctaacatgctactg	7	14	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156346442	A	A	156346442	1	1	49	0	1	0	0	0	0	0	0	0	16026	870	30	3		3	TIMD4	5	156346442	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	574884	156346442	24568818	527	53540											
EBF1	1879	broad.mit.edu	37	chr5	158334222	158334222	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggggacccagacagaaaaAcagtggagcgaaggtgacaa	14	7	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158334222	T	T	158334222	1	4	49	0	1	0	0	0	0	0	0	0	4920	58	2	5		5	EBF1	5	158334222	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1987780	158334222	22581038	528	53541											
ADRA1B	147	broad.mit.edu	37	chr5	159344583	159344583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcattctagtcatgtactGccgtgtctatatagtggcca	10	9	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159344583	T	T	159344583	3	4	49	1	0	0	0	0	1	0	0	0	335	1319	46	3	673	3	ADRA1B	5	159344583	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1010361	159344583	21570677	529	53542											
ADRA1B	147	broad.mit.edu	37	chr5	159350366	159350366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacgagacaggtaggagGctttgcagtggcagtgagag	17	6	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159350366	T	T	159350366	1	4	49	0	1	0	0	0	0	0	0	0	335	1218	42	3		3	ADRA1B	5	159350366	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5783	159350366	21564894	530	53543											
ODZ2	57451	broad.mit.edu	37	chr5	167054025	167054025	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagggagcataacaatgacAtgagggcttggaaaggaaat	13	5	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167054025	T	T	167054025	1	4	49	0	1	0	0	0	0	0	0	0	10930	232	8	5		5	ODZ2	5	167054025	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	7703659	167054025	13861235	531	53544											
ODZ2	57451	broad.mit.edu	37	chr5	167182137	167182137	+	Intron	DEL	G	-	-													atcatctcttatggagacccGgcagtacctcacctcagtct							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167182137	-	-	167182137	6	5	49	0	1	1	0	1	0	0	0	0	10930	1131	39	0		0	ODZ2	5	167182137	Intron	DEL	G	TCGA-17-Z016-01A-01W-0746-08	128112	167182137	13733123	532	53545											
ODZ2	57451	broad.mit.edu	37	chr5	167416896	167416896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgaaatgtagaagacaaGctgcccaatgcacaacggga	11	9	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167416896	T	T	167416896	1	4	49	0	1	0	0	0	0	0	0	0	10930	986	34	3		3	ODZ2	5	167416896	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	234759	167416896	13498364	533	53546											
ODZ2	57451	broad.mit.edu	37	chr5	167645119	167645119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctttaatctgataccacGtcatccacaggttcgtctgg	8	11	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167645119	T	T	167645119	1	4	49	0	1	0	0	0	0	0	0	0	10930	1160	40	3		3	ODZ2	5	167645119	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	228223	167645119	13270141	534	53547											
SLIT3	6586	broad.mit.edu	37	chr5	168620362	168620362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcaaagccctgctccaaGtctctatgtcagggcctaac	8	13	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168620362	T	T	168620362	1	4	49	0	1	0	0	0	0	0	0	0	14855	1044	36	3		3	SLIT3	5	168620362	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	975243	168620362	12294898	535	53548											
SLIT3	6586	broad.mit.edu	37	chr5	168678599	168678599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaacgatatcccttgagCgtgcccggctaaccttaagg	10	11	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168678599	A	A	168678599	1	1	49	0	1	0	0	0	0	0	0	0	14855	783	27	3		3	SLIT3	5	168678599	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	58237	168678599	12236661	536	53549											
DOCK2	1794	broad.mit.edu	37	chr5	169122824	169122824	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggatcttggaaacaaagaCctcaacagggataaaattta	8	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169122824	G	G	169122824	3	3	49	1	0	0	0	0	1	0	0	0	4727	506	18	4	899	4	DOCK2	5	169122824	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	444225	169122824	11792436	537	53550											
DOCK2	1794	broad.mit.edu	37	chr5	169148925	169148925	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcctgagtcaaagtctggAtcaagtgtctctgattaggc	11	9	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169148925	T	T	169148925	1	4	49	0	1	0	0	0	0	0	0	0	4727	348	12	5		5	DOCK2	5	169148925	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	26101	169148925	11766335	538	53551											
KCNIP1	30820	broad.mit.edu	37	chr5	169988462	169988462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccaccaccaaaggcacGtggaagggggctgggcaaat	15	11	0	0	rs111501996		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169988462	T	T	169988462	1	4	49	0	1	0	0	0	0	0	0	0	8109	1160	40	3		3	KCNIP1	5	169988462	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	839537	169988462	10926798	539	53552											
RANBP17	64901	broad.mit.edu	37	chr5	170493026	170493026	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacgcccaccaccatgcccAgctaattttttgtattttta	5	12	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170493026	G	G	170493026	1	3	49	0	1	0	0	0	0	0	0	0	13135	203	7	5		5	RANBP17	5	170493026	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	504564	170493026	10422234	540	53553											
FGF18	8817	broad.mit.edu	37	chr5	170872012	170872012	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaggaaaatggagcagggGaatggggtagggctggactg	19	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170872012	T	T	170872012	1	4	49	0	1	0	0	0	0	0	0	0	5903	1189	41	3		3	FGF18	5	170872012	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	378986	170872012	10043248	541	53554											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171766497	171766497	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgccgctcccgctcccgctCcagcagctccccctccgact	7	24	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171766497	A	A	171766497	4	1	49	1	0	0	0	0	0	1	0	0	14370	864	30	3	1127	3	SH3PXD2B	5	171766497	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	894485	171766497	9148763	542	53555											
HMP19	51617	broad.mit.edu	37	chr5	173491101	173491101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtaacttgaattttctctTacgtgtgtttgaaggggggt	13	4	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173491101	A	A	173491101	1	1	49	0	1	0	0	0	0	0	0	0	7312	1769	61	5		5	HMP19	5	173491101	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1724604	173491101	7424159	543	53556											
HRH2	3274	broad.mit.edu	37	chr5	175103006	175103006	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtgtagatgcgtgggtaCgcacacgtgtgttctccctt	12	10	1	1	rs114524600	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175103006	G	G	175103006	1	3	49	0	1	0	0	0	0	0	0	0	7423	551	19	4		4	HRH2	5	175103006	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1611905	175103006	5812254	544	53557											
FAM153B	202134	broad.mit.edu	37	chr5	175530844	175530844	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgttgaggaatgtggccCtgtctcactggctttcctgt	12	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175530844	T	T	175530844	1	4	49	0	1	0	0	0	0	0	0	0	5507	696	24	4		4	FAM153B	5	175530844	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	427838	175530844	5384416	545	53558											
HK3	3101	broad.mit.edu	37	chr5	176316615	176316615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccaggcagcacaccctcCacctgtcatcacaaatggtc	7	16	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176316615	A	A	176316615	1	1	49	0	1	0	0	0	0	0	0	0	7259	609	21	2		2	HK3	5	176316615	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	785771	176316615	4598645	546	53559											
NSD1	64324	broad.mit.edu	37	chr5	176638954	176638954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaagaaaactctgagtGtgcctttagggtcttacttc	10	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176638954	T	T	176638954	3	4	49	1	0	0	0	0	1	0	0	0	10764	1377	48	3	3568	3	NSD1	5	176638954	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	322339	176638954	4276306	547	53560											
PROP1	5626	broad.mit.edu	37	chr5	177421211	177421211	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactccagctgttccaactGcactgggctgaaggtggtgc	13	11	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177421211	A	A	177421211	4	1	49	1	0	0	0	0	0	1	0	0	12663	1328	46	4	450	4	PROP1	5	177421211	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	782257	177421211	3494049	548	53561											
CLK4	57396	broad.mit.edu	37	chr5	178060460	178060460	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggactgagatactggaGggtgggtacagcacagaagt	18	5	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178060460	A	A	178060460	1	1	49	0	1	0	0	0	0	0	0	0	3571	1015	35	4		4	CLK4	5	178060460	5'Flank	SNP	G	TCGA-17-Z016-01A-01W-0746-08	639249	178060460	2854800	549	53562											
ZNF454	285676	broad.mit.edu	37	chr5	178373773	178373773	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccctctgggaacacacctGaccctgggctttcctatcaa	7	16	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178373773	T	T	178373773	1	4	49	0	1	0	0	0	0	0	0	0	18050	1305	45	3		3	ZNF454	5	178373773	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	313313	178373773	2541487	550	53563											
ADAMTS2	9509	broad.mit.edu	37	chr5	178699950	178699950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccccgagaggaggggacGtgggtggccggcgatacacc	18	13	0	1	rs149308698		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178699950	T	T	178699950	3	4	49	1	0	0	0	0	1	0	0	0	265	1145	40	3	3140	3	ADAMTS2	5	178699950	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	326177	178699950	2215310	551	53564											
TBC1D9B	23061	broad.mit.edu	37	chr5	179292811	179292811	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaacgctggggtctctaAgaacagcggcagagaatggc	13	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179292811	C	C	179292811	1	2	49	0	1	0	0	0	0	0	0	0	15750	87	3	5		5	TBC1D9B	5	179292811	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	592861	179292811	1622449	552	53565											
DUSP22	56940	broad.mit.edu	37	chr6	350919	350919	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagagtttaggctggtgCtgccaaaaagaaaagcaaca	10	9	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	350919	A	A	350919	1	1	49	0	1	0	0	0	0	0	0	0	4861	812	28	3		3	DUSP22	6	350919	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08		350919	170764148	553	53566											
EXOC2	55770	broad.mit.edu	37	chr6	497487	497487	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttctttggaaatggtgaaCacctggtttgaaataggaag	12	4	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	497487	T	T	497487	2	4	49	1	0	0	0	0	0	0	0	1	5344	465	17	4		4	EXOC2	6	497487	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	146568	497487	170617580	554	53567											
FAM136B	387071	broad.mit.edu	37	chr6	3045946	3045946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcagcagctggacggttGtgtgaccaagtgtgtggatg	17	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3045946	T	T	3045946	3	4	49	1	0	0	0	0	1	0	0	0	5497	1377	48	3	331	3	FAM136B	6	3045946	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2548459	3045946	168069121	555	53568											
SLC22A23	63027	broad.mit.edu	37	chr6	3413548	3413548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctccaacctggcagagaGcaagctgggcatacaagtgc	11	14	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3413548	A	A	3413548	1	1	49	0	1	0	0	0	0	0	0	0	14566	986	34	4		4	SLC22A23	6	3413548	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	367602	3413548	167701519	556	53569											
PRPF4B	8899	broad.mit.edu	37	chr6	4032299	4032299	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taaaattactacaaagaaacGaagtaaaagcagatccaaag	6	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4032299	C	C	4032299	3	2	49	1	0	0	0	0	1	0	0	0	12679	1058	37	4	554	4	PRPF4B	6	4032299	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	618751	4032299	167082768	557	53570											
F13A1	2162	broad.mit.edu	37	chr6	6240775	6240776	+	Intron	DNP	CC	AA	AA													aggcaactcatgacccacccCcagtgctaccagcaaccttg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6240776	AA	AA	6240775	1	1	49	0	1	0	0	0	0	0	0	0	5383	638	22	2		2	F13A1	6	6240775	Intron	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	2208476	6240775	164874292	558	53571											
LY86	9450	broad.mit.edu	37	chr6	6595408	6595408	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agagaaaagagcggaaggagGaggaaaaagaggaaaaggaa	17	1	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6595408	C	C	6595408	1	2	49	0	1	0	0	0	0	0	0	0	9188	1189	41	4		4	LY86	6	6595408	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	354633	6595408	164519659	559	53572											
CDKAL1	54901	broad.mit.edu	37	chr6	20821947	20821947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgatggaggaggtgagaGgagatgtaatttgaagacaa	16	2	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20821947	T	T	20821947	1	4	49	0	1	0	0	0	0	0	0	0	3182	1015	35	2		2	CDKAL1	6	20821947	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	14226539	20821947	150293120	560	53573											
LRRC16A	55604	broad.mit.edu	37	chr6	25448233	25448233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctctccatatacattttGgctgctgagggctgcaggag	11	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25448233	T	T	25448233	1	4	49	0	1	0	0	0	0	0	0	0	9058	1363	47	2		2	LRRC16A	6	25448233	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4626286	25448233	145666834	561	53574											
HLA-G	3135	broad.mit.edu	37	chr6	29796269	29796269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatccccgcgggtgggtcCgggcgagggcgaggctcggt	19	11	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29796269	A	A	29796269	1	1	49	0	1	0	0	0	0	0	0	0	7279	667	23	1		1	HLA-G	6	29796269	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4348036	29796269	141318798	562	53575											
TRIM15	89870	broad.mit.edu	37	chr6	30138770	30138770	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaaaacttggcgcatcatCtggaaatagattcaggtaaa	9	7	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30138770	A	A	30138770	3	1	49	1	0	0	0	0	1	0	0	0	16614	912	32	3	887	3	TRIM15	6	30138770	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	342501	30138770	140976297	563	53576											
PSORS1C2	170680	broad.mit.edu	37	chr6	31105978	31105978	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagagggggtgcccctggcCaagggtcaccggggactggg	20	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31105978	T	T	31105978	4	4	49	1	0	0	0	0	0	1	0	0	12821	595	21	4	253	4	PSORS1C2	6	31105978	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	967208	31105978	140009089	564	53577											
HLA-B	3106	broad.mit.edu	37	chr6	31308992	31308992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggacttcggctcctggGcagccagcttggcagtggca	16	12	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31308992	T	T	31308992	1	4	49	0	1	0	0	0	0	0	0	0	7263	1218	42	3		3	HLA-B	6	31308992	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	203014	31308992	139806075	565	53578											
LY6G6C	80740	broad.mit.edu	37	chr6	31686700	31686700	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagggacccagaaaaaggaGagtgaagggtgtgaggtggg	20	3	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31686700	T	T	31686700	1	4	49	0	1	0	0	0	0	0	0	0	9182	957	33	3		3	LY6G6C	6	31686700	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	377708	31686700	139428367	566	53579											
SLC26A8	116369	broad.mit.edu	37	chr6	35919323	35919323	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggctttatacttgctaGgaaaggccttctaattagct	9	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35919323	A	A	35919323	1	1	49	0	1	0	0	0	0	0	0	0	14637	1015	35	4		4	SLC26A8	6	35919323	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4232623	35919323	135195744	567	53580											
DAAM2	23500	broad.mit.edu	37	chr6	39840882	39840882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtctttctctttttaaGcctgggccagaggcagggga	12	8	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39840882	T	T	39840882	1	4	49	0	1	0	0	0	0	0	0	0	4249	986	34	3		3	DAAM2	6	39840882	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3921559	39840882	131274185	568	53581											
LRFN2	57497	broad.mit.edu	37	chr6	40365605	40365605	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtagtgtggctcacagatgGatgccggcccatggactgtt	14	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40365605	T	T	40365605	1	4	49	0	1	0	0	0	0	0	0	0	9025	1189	41	3		3	LRFN2	6	40365605	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	524723	40365605	130749462	569	53582											
LRFN2	57497	broad.mit.edu	37	chr6	40415848	40415848	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaccgggagcgtgggtcCtcctgagcagtgtccttcac	14	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40415848	T	T	40415848	1	4	49	0	1	0	0	0	0	0	0	0	9025	696	24	4		4	LRFN2	6	40415848	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	50243	40415848	130699219	570	53583											
CAPN11	11131	broad.mit.edu	37	chr6	44147977	44147977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctcagggagctgctgtcGggtcctccctcactttgtcc	11	14	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44147977	T	T	44147977	1	4	49	0	1	0	0	0	0	0	0	0	2650	1131	39	1		1	CAPN11	6	44147977	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3732129	44147977	126967090	571	53584											
SPATS1	221409	broad.mit.edu	37	chr6	44329629	44329629	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcaacatccacacctaCcacgtcggaaagcagtgctt	8	14	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44329629	T	T	44329629	2	4	49	1	0	0	0	0	0	0	0	1	15134	518	18	4		4	SPATS1	6	44329629	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	181652	44329629	126785438	572	53585											
CLIC5	53405	broad.mit.edu	37	chr6	45905777	45905777	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggggagggagggctctgctCaagagaaagtaaatgaaaat	15	4	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45905777	A	A	45905777	1	1	49	0	1	0	0	0	0	0	0	0	3561	841	29	3		3	CLIC5	6	45905777	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1576148	45905777	125209290	573	53586											
RCAN2	10231	broad.mit.edu	37	chr6	46293015	46293015	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcactacatgcatttctaGcgcagactatgagctgaaaa	7	10	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46293015	A	A	46293015	1	1	49	0	1	0	0	0	0	0	0	0	13277	986	34	4		4	RCAN2	6	46293015	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	387238	46293015	124822052	574	53587											
TFAP2B	7021	broad.mit.edu	37	chr6	50808085	50808085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttggagtaggtggtggGgaggggcagagaaagaagcc	20	4	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50808085	T	T	50808085	1	4	49	0	1	0	0	0	0	0	0	0	15911	1247	43	2		2	TFAP2B	6	50808085	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4515070	50808085	120306982	575	53588											
PAQR8	85315	broad.mit.edu	37	chr6	52236512	52236512	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacaaagacataaaatagcTaccatgtattgagcaatcac	5	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52236512	A	A	52236512	1	1	49	0	1	0	0	0	0	0	0	0	11535	1537	53	5		5	PAQR8	6	52236512	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1428427	52236512	118878555	576	53589											
C6orf142	90523	broad.mit.edu	37	chr6	53989530	53989530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggcaccgcagctgtccGgcccaagtctctagctatct	10	14	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53989530	T	T	53989530	3	4	49	1	0	0	0	0	1	0	0	0	2356	1116	39	1	489	1	C6orf142	6	53989530	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1753018	53989530	117125537	577	53590											
FAM83B	222584	broad.mit.edu	37	chr6	54742823	54742823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgataagtagatgaggtGctagtacccagaatgtagac	11	5	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54742823	T	T	54742823	1	4	49	0	1	0	0	0	0	0	0	0	5687	1334	46	3		3	FAM83B	6	54742823	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	753293	54742823	116372244	578	53591											
COL21A1	81578	broad.mit.edu	37	chr6	55933973	55933973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcttatgaaaagcaccaCtgtttttatctctacatatc	4	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55933973	A	A	55933973	1	1	49	0	1	0	0	0	0	0	0	0	3712	580	20	3		3	COL21A1	6	55933973	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1191150	55933973	115181094	579	53592											
PRIM2	5558	broad.mit.edu	37	chr6	57398409	57398409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttaaaatatgctccctGcaatgtagttgaaaattcta	5	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398409	T	T	57398409	1	4	49	0	1	0	0	0	0	0	0	0	12597	1334	46	3		3	PRIM2	6	57398409	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1464436	57398409	113716658	580	53593											
PRIM2	5558	broad.mit.edu	37	chr6	57454096	57454096	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttgacagtgtaattgaTagatcctaggaaggaactga	11	4	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57454096	A	A	57454096	1	1	49	0	1	0	0	0	0	0	0	0	12597	1421	49	5		5	PRIM2	6	57454096	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	55687	57454096	113660971	581	53594											
EYS	346007	broad.mit.edu	37	chr6	66012244	66012244	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactcagtgaagacacagacGttcctgttgagagcaatcag	10	9	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66012244	C	C	66012244	1	2	49	0	1	0	0	0	0	0	0	0	5375	1160	40	4		4	EYS	6	66012244	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	8558148	66012244	105102823	582	53595											
EYS	346007	broad.mit.edu	37	chr6	66104865	66104865	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctgtcatagtcatagCcaaccttcctgagcatcccc	5	16	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66104865	G	G	66104865	1	3	49	0	1	0	0	0	0	0	0	0	5375	754	26	4		4	EYS	6	66104865	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	92621	66104865	105010202	583	53596											
BAI3	577	broad.mit.edu	37	chr6	70071473	70071473	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatataaatagagatattgaTtgattggttgattgattgat	10	0	0	6			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70071473	C	C	70071473	1	2	49	0	1	0	0	0	0	0	0	0	1305	1508	52	5		5	BAI3	6	70071473	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3966608	70071473	101043594	584	53597											
COL9A1	1297	broad.mit.edu	37	chr6	70942198	70942198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactggatattcagaaattGgtaaaacataaattcctcga	6	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70942198	T	T	70942198	1	4	49	0	1	0	0	0	0	0	0	0	3739	1363	47	2		2	COL9A1	6	70942198	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	870725	70942198	100172869	585	53598											
OOEP	441161	broad.mit.edu	37	chr6	74078998	74078998	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcacccgattctgtacacGgggccgcccgaaaacggtga	11	14	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74078998	A	A	74078998	3	1	49	1	0	0	0	0	1	0	0	0	10964	1116	39	4	156	4	OOEP	6	74078998	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3136800	74078998	97036069	586	53599											
PHIP	55023	broad.mit.edu	37	chr6	79770483	79770483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcaagaagaggtcctagtCgatgacatatttgcagcaag	11	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79770483	A	A	79770483	3	1	49	1	0	0	0	0	1	0	0	0	11937	884	31	3	5367	3	PHIP	6	79770483	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5691485	79770483	91344584	587	53600											
GRIK2	2898	broad.mit.edu	37	chr6	102304482	102304482	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactgaggaattataataaTggaccatggaatttggggcc	11	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102304482	G	G	102304482	1	3	49	0	1	0	0	0	0	0	0	0	6840	1479	51	5		5	GRIK2	6	102304482	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	22533999	102304482	68810585	588	53601											
GRIK2	2898	broad.mit.edu	37	chr6	102483249	102483249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtatgacaaaatgtggGcctttatgagtagcagaagg	12	7	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102483249	T	T	102483249	3	4	49	1	0	0	0	0	1	0	0	0	6840	1203	42	3	2173	3	GRIK2	6	102483249	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	178767	102483249	68631818	589	53602											
QRSL1	55278	broad.mit.edu	37	chr6	107085368	107085368	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccaggaaggctataggtcAgcatactggggagcgtggtg	16	7	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107085368	T	T	107085368	1	4	49	0	1	0	0	0	0	0	0	0	12989	203	7	5		5	QRSL1	6	107085368	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4602119	107085368	64029699	590	53603											
SEC63	11231	broad.mit.edu	37	chr6	108192698	108192698	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaataaatgtaccatccCctacttgaaaggtttcaata	5	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108192698	A	A	108192698	1	1	49	0	1	0	0	0	0	0	0	0	14118	638	22	2		2	SEC63	6	108192698	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1107330	108192698	62922369	591	53604											
HS3ST5	222537	broad.mit.edu	37	chr6	114379344	114379344	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgaccttcaatggggcaaaTgggttgtagcctgcaagcaa	12	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114379344	A	A	114379344	3	1	49	1	0	0	0	0	1	0	0	0	7435	1464	51	5	926	5	HS3ST5	6	114379344	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	6186646	114379344	56735723	592	53605											
ZUFSP	221302	broad.mit.edu	37	chr6	116972826	116972826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttattaagttgagaggcccCctgaggatcaaaaccttcct	9	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116972826	A	A	116972826	3	1	49	1	0	0	0	0	1	0	0	0	18375	623	22	2	527	2	ZUFSP	6	116972826	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2593482	116972826	54142241	593	53606											
SLC35F1	222553	broad.mit.edu	37	chr6	118257384	118257384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgctcctcttctgcataTagggactttctgtttcttgt	7	9	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118257384	C	C	118257384	1	2	49	0	1	0	0	0	0	0	0	0	14702	1421	49	5		5	SLC35F1	6	118257384	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1284558	118257384	52857683	594	53607											
C6orf204	387119	broad.mit.edu	37	chr6	118879941	118879941	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtattttttgttctgaggaTaggttacatagatgattcta	9	3	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118879941	A	A	118879941	1	1	49	0	1	0	0	0	0	0	0	0	2376	1421	49	5		5	C6orf204	6	118879941	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	622557	118879941	52235126	595	53608											
C6orf170	221322	broad.mit.edu	37	chr6	121434319	121434319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagagactgaggaatttgcCatacctatattaaaagccca	7	8	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121434319	A	A	121434319	3	1	49	1	0	0	0	0	1	0	0	0	2367	594	21	2	735	2	C6orf170	6	121434319	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2554378	121434319	49680748	596	53609											
PKIB	5570	broad.mit.edu	37	chr6	122835532	122835533	+	Intron	DNP	GG	TT	TT													agcaaactcaaattctctatGgtggtacatgcttgaaactc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	122835533	TT	TT	122835532	1	4	49	0	1	0	0	0	0	0	0	0	12069	1363	47	2		2	PKIB	6	122835532	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	1401213	122835532	48279535	597	53610											
TRDN	10345	broad.mit.edu	37	chr6	123734394	123734394	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagcagtaatgccaatgacAtcagcatctcagtctctcag	8	11	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123734394	T	T	123734394	1	4	49	0	1	0	0	0	0	0	0	0	16592	232	8	5		5	TRDN	6	123734394	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	898862	123734394	47380673	598	53611											
LAMA2	3908	broad.mit.edu	37	chr6	129250736	129250736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcctgcagttctggagccCcagatgccgcaaaagcgctt	11	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129250736	A	A	129250736	1	1	49	0	1	0	0	0	0	0	0	0	8678	638	22	2		2	LAMA2	6	129250736	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5516342	129250736	41864331	599	53612											
LAMA2	3908	broad.mit.edu	37	chr6	129785486	129785486	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatttgatggagaaggttaTgcattggtcagccgtcccat	11	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129785486	A	A	129785486	4	1	49	1	0	0	0	0	0	1	0	0	8678	1471	51	5	7242	5	LAMA2	6	129785486	Nonsense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	534750	129785486	41329581	600	53613											
LAMA2	3908	broad.mit.edu	37	chr6	129800123	129800123	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattctctaaattaccatgAtaaaaaatggtattatgaag	6	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129800123	T	T	129800123	1	4	49	0	1	0	0	0	0	0	0	0	8678	348	12	5		5	LAMA2	6	129800123	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	14637	129800123	41314944	601	53614											
NMBR	4829	broad.mit.edu	37	chr6	142409565	142409565	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttagagatgaagatgttgggGacgctcctcatggcgctgtt	14	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142409565	T	T	142409565	2	4	49	1	0	0	0	0	0	0	0	1	10582	1161	41	3		3	NMBR	6	142409565	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	12609442	142409565	28705502	602	53615											
STX11	8676	broad.mit.edu	37	chr6	144507902	144507902	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcctggagtccctgtaccgAgacatccgggacattcagga	11	12	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144507902	T	T	144507902	2	4	49	1	0	0	0	0	0	0	0	1	15455	291	11	5		5	STX11	6	144507902	Silent	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2098337	144507902	26607165	603	53616											
SASH1	23328	broad.mit.edu	37	chr6	148867326	148867326	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcctgaggcacatttagtGatcacgcttagtgatgacca	9	10	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148867326	T	T	148867326	1	4	49	0	1	0	0	0	0	0	0	0	13960	1305	45	3		3	SASH1	6	148867326	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4359424	148867326	22247741	604	53617											
C6orf72	116254	broad.mit.edu	37	chr6	149901269	149901269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaatatgtttggaaatgaGcttgtttaaaaaaatgcttc	8	3	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149901269	T	T	149901269	1	4	49	0	1	0	0	0	0	0	0	0	2395	986	34	3		3	C6orf72	6	149901269	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1033943	149901269	21213798	605	53618											
MTHFD1L	25902	broad.mit.edu	37	chr6	151256887	151256887	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtaaatgcagtgcttcttAaagtggtttcttctccctac	8	9	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151256887	T	T	151256887	1	4	49	0	1	0	0	0	0	0	0	0	10022	377	13	5		5	MTHFD1L	6	151256887	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1355618	151256887	19858180	606	53619											
ZBTB2	57621	broad.mit.edu	37	chr6	151694423	151694423	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggcaggtccagtgattcTcaagtgctactgaaagcacc	11	11	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151694423	A	A	151694423	1	1	49	0	1	0	0	0	0	0	0	0	17654	1566	54	5		5	ZBTB2	6	151694423	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	437536	151694423	19420644	607	53620											
SYNE1	23345	broad.mit.edu	37	chr6	152534649	152534649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcatttagacactcgtgCaaagggcatgattttaattc	8	8	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152534649	A	A	152534649	1	1	49	0	1	0	0	0	0	0	0	0	15564	725	25	3		3	SYNE1	6	152534649	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	840226	152534649	18580418	608	53621											
SYNE1	23345	broad.mit.edu	37	chr6	152716805	152716805	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgtgctgatcttcaaAgctaagggaaagaaaatgcc	9	7	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152716805	T	T	152716805	3	4	49	1	0	0	0	0	1	0	0	0	15564	86	3	5	19292	5	SYNE1	6	152716805	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	182156	152716805	18398262	609	53622											
IGF2R	3482	broad.mit.edu	37	chr6	160485539	160485539	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctccacagccatcttcttCtactgtgaccgcggcaccca	7	18	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160485539	T	T	160485539	2	4	49	1	0	0	0	0	0	0	0	1	7646	912	32	4		4	IGF2R	6	160485539	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7768734	160485539	10629528	610	53623											
LPA	4018	broad.mit.edu	37	chr6	161027841	161027841	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgccacaagcacaaatggCtctcaatcactaatcctgtc	5	13	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161027841	T	T	161027841	1	4	49	0	1	0	0	0	0	0	0	0	8990	812	28	4		4	LPA	6	161027841	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	542302	161027841	10087226	611	53624											
PACRG	135138	broad.mit.edu	37	chr6	163482453	163482453	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgctggatgctactgcCaaggtctggacaggggacat	15	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163482453	T	T	163482453	1	4	49	0	1	0	0	0	0	0	0	0	11464	609	21	4		4	PACRG	6	163482453	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2454612	163482453	7632614	612	53625											
WDR27	253769	broad.mit.edu	37	chr6	170058358	170058358	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtattcttagatctcacagCaccctgtactgaccacgtcg	7	13	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170058358	T	T	170058358	1	4	49	0	1	0	0	0	0	0	0	0	17411	725	25	4		4	WDR27	6	170058358	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6575905	170058358	1056709	613	53626											
TTYH3	80727	broad.mit.edu	37	chr7	2698506	2698506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcgggcctacccatgggCcccccgacctgcagctggga	13	17	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2698506	A	A	2698506	1	1	49	0	1	0	0	0	0	0	0	0	16867	754	26	3		3	TTYH3	7	2698506	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08		2698506	156440157	614	53627											
NXPH1	30010	broad.mit.edu	37	chr7	8650622	8650622	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgagtcacaatagcactgGgtctggataatagccattgt	10	8	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8650622	C	C	8650622	1	2	49	0	1	0	0	0	0	0	0	0	10885	1247	43	4		4	NXPH1	7	8650622	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5952116	8650622	150488041	615	53628											
THSD7A	221981	broad.mit.edu	37	chr7	11452302	11452302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttacattataatcataGtggtagcagtttttgttcag	8	6	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11452302	T	T	11452302	3	4	49	1	0	0	0	0	1	0	0	0	16002	1020	36	3	1354	3	THSD7A	7	11452302	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2801680	11452302	147686361	616	53629											
THSD7A	221981	broad.mit.edu	37	chr7	11486087	11486087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtagcctataaatcaatgCtattttctcattccacagtg	5	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11486087	A	A	11486087	1	1	49	0	1	0	0	0	0	0	0	0	16002	812	28	3		3	THSD7A	7	11486087	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	33785	11486087	147652576	617	53630											
THSD7A	221981	broad.mit.edu	37	chr7	11629893	11629893	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgtcagtaaaccagaactGaccaaagatggaattgtgtt	9	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11629893	T	T	11629893	1	4	49	0	1	0	0	0	0	0	0	0	16002	1305	45	3		3	THSD7A	7	11629893	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	143806	11629893	147508770	618	53631											
THSD7A	221981	broad.mit.edu	37	chr7	11857830	11857830	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctagcgctataatagccCaagggaaaacattttctaca	7	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11857830	G	G	11857830	1	3	49	0	1	0	0	0	0	0	0	0	16002	609	21	4		4	THSD7A	7	11857830	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	227937	11857830	147280833	619	53632											
DGKB	1607	broad.mit.edu	37	chr7	14898446	14898446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagccagcaaaacagattacAgatattctaaccaaacattt	4	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14898446	G	G	14898446	1	3	49	0	1	0	0	0	0	0	0	0	4506	203	7	5		5	DGKB	7	14898446	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3040616	14898446	144240217	620	53633											
TMEM195	392636	broad.mit.edu	37	chr7	15271378	15271378	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgttctgtgagggtaaAatgatataatgtgattttca	11	4	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15271378	C	C	15271378	1	2	49	0	1	0	0	0	0	0	0	0	16240	29	1	5		5	TMEM195	7	15271378	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	372932	15271378	143867285	621	53634											
TMEM195	392636	broad.mit.edu	37	chr7	15526594	15526594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttgacaaccaacaggCgcatcctccaccccttcatc	4	18	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15526594	A	A	15526594	1	1	49	0	1	0	0	0	0	0	0	0	16240	783	27	3		3	TMEM195	7	15526594	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	255216	15526594	143612069	622	53635											
SNX13	23161	broad.mit.edu	37	chr7	17838901	17838901	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagttacattttagccttTgtaacttgacattaaattct	4	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17838901	C	C	17838901	1	2	49	0	1	0	0	0	0	0	0	0	14998	1827	63	5		5	SNX13	7	17838901	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2312307	17838901	141299762	623	53636											
HDAC9	9734	broad.mit.edu	37	chr7	18722473	18722473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattagctgggcatggtggtGggcgcctgtgatcccagcta	15	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18722473	T	T	18722473	1	4	49	0	1	0	0	0	0	0	0	0	7081	1363	47	2		2	HDAC9	7	18722473	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	883572	18722473	140416190	624	53637											
HDAC9	9734	broad.mit.edu	37	chr7	18748801	18748801	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctattgacacattctctaTgtttcgtcccctcactctct	3	15	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18748801	G	G	18748801	1	3	49	0	1	0	0	0	0	0	0	0	7081	1479	51	5		5	HDAC9	7	18748801	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	26328	18748801	140389862	625	53638											
HDAC9	9734	broad.mit.edu	37	chr7	18816738	18816738	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcacacttactcaggcactCaaagatctgggactcagtag	10	11	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18816738	G	G	18816738	1	3	49	0	1	0	0	0	0	0	0	0	7081	841	29	4		4	HDAC9	7	18816738	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	67937	18816738	140321925	626	53639											
HDAC9	9734	broad.mit.edu	37	chr7	19021511	19021511	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccacagaaacaaacatgaAcaatcaactataataaatga	3	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19021511	G	G	19021511	1	3	49	0	1	0	0	0	0	0	0	0	7081	58	2	5		5	HDAC9	7	19021511	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	204773	19021511	140117152	627	53640											
RAPGEF5	9771	broad.mit.edu	37	chr7	22297932	22297932	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagcaatcaagacagtgtGgtattgttgaaagaatagac	10	5	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22297932	A	A	22297932	1	1	49	0	1	0	0	0	0	0	0	0	13155	1363	47	4		4	RAPGEF5	7	22297932	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3276421	22297932	136840731	628	53641											
DFNA5	1687	broad.mit.edu	37	chr7	24748122	24748122	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatttcaagcttcactcTtctctgatgactcactaaac	4	11	5	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24748122	C	C	24748122	1	2	49	0	1	0	0	0	0	0	0	0	4494	1624	56	5		5	DFNA5	7	24748122	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2450190	24748122	134390541	629	53642											
NPVF	64111	broad.mit.edu	37	chr7	25264721	25264721	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agattacaggccacagctttAgggacaggctccaggtttct	11	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25264721	T	T	25264721	1	4	49	0	1	0	0	0	0	0	0	0	10700	435	15	5		5	NPVF	7	25264721	3'UTR	SNP	A	TCGA-17-Z016-01A-01W-0746-08	516599	25264721	133873942	630	53643											
HOXA4	3201	broad.mit.edu	37	chr7	27169623	27169623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgcagcccgggtcagatGggggctcccctcccgaggcc	14	18	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27169623	T	T	27169623	1	4	49	0	1	0	0	0	0	0	0	0	7361	1363	47	2		2	HOXA4	7	27169623	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1904902	27169623	131969040	631	53644											
JAZF1	221895	broad.mit.edu	37	chr7	28084862	28084862	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggctaagtgccctgaagcCcattttccctaaaatccaaa	6	12	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28084862	G	G	28084862	1	3	49	0	1	0	0	0	0	0	0	0	8016	638	22	4		4	JAZF1	7	28084862	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	915239	28084862	131053801	632	53645											
CHN2	1124	broad.mit.edu	37	chr7	29329626	29329626	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatttgaaggttttagtgTtgcttttaaagcagtttgtt	10	3	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29329626	C	C	29329626	1	2	49	0	1	0	0	0	0	0	0	0	3394	1740	60	5		5	CHN2	7	29329626	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1244764	29329626	129809037	633	53646											
PLEKHA8	84725	broad.mit.edu	37	chr7	30126942	30126942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttagacctggctctctGctctcctccctgcggataac	7	14	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30126942	T	T	30126942	1	4	49	0	1	0	0	0	0	0	0	0	12157	1334	46	3		3	PLEKHA8	7	30126942	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	797316	30126942	129011721	634	53647											
FAM188B	84182	broad.mit.edu	37	chr7	30846900	30846900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcttataagggcattttGgcaggtatctaggaatcaac	10	6	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30846900	T	T	30846900	1	4	49	0	1	0	0	0	0	0	0	0	5561	1363	47	2		2	FAM188B	7	30846900	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	719958	30846900	128291763	635	53648											
BMPER	168667	broad.mit.edu	37	chr7	34172049	34172049	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccagttctgccctgctcTccctaccacgccccaaaggc	7	19	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34172049	C	C	34172049	1	2	49	0	1	0	0	0	0	0	0	0	1474	1566	54	5		5	BMPER	7	34172049	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3325149	34172049	124966614	636	53649											
AOAH	313	broad.mit.edu	37	chr7	36626017	36626017	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctcagctctcatcttcctCtgcctcccccatcatttggc	4	19	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36626017	T	T	36626017	1	4	49	0	1	0	0	0	0	0	0	0	728	928	32	4		4	AOAH	7	36626017	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2453968	36626017	122512646	637	53650											
ELMO1	9844	broad.mit.edu	37	chr7	36960775	36960775	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagcctccagaactgtgaGcaacaaatttttgttattta	6	10	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36960775	C	C	36960775	1	2	49	0	1	0	0	0	0	0	0	0	5107	986	34	4		4	ELMO1	7	36960775	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	334758	36960775	122177888	638	53651											
ELMO1	9844	broad.mit.edu	37	chr7	36984303	36984303	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattgatttgttgcctgctgGaagccagttgtatagaaagt	11	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36984303	A	A	36984303	1	1	49	0	1	0	0	0	0	0	0	0	5107	1189	41	4		4	ELMO1	7	36984303	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	23528	36984303	122154360	639	53652											
ELMO1	9844	broad.mit.edu	37	chr7	36995142	36995142	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caataatctgatttctgaatAtcttggagtatgtaagtatc	7	5	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36995142	G	G	36995142	1	3	49	0	1	0	0	0	0	0	0	0	5107	464	16	5		5	ELMO1	7	36995142	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	10839	36995142	122143521	640	53653											
ELMO1	9844	broad.mit.edu	37	chr7	37460860	37460860	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaacagacacaaatacTaagtatatgccaagtttcct	5	8	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37460860	C	C	37460860	1	2	49	0	1	0	0	0	0	0	0	0	5107	1537	53	5		5	ELMO1	7	37460860	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	465718	37460860	121677803	641	53654											
POU6F2	11281	broad.mit.edu	37	chr7	39481806	39481806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaccaggaagctaggctGtgttggtgggcaagacagat	16	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39481806	T	T	39481806	1	4	49	0	1	0	0	0	0	0	0	0	12381	1392	48	3		3	POU6F2	7	39481806	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2020946	39481806	119656857	642	53655											
C7orf10	79783	broad.mit.edu	37	chr7	40504879	40504879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttaacagaggtgccaaaCaagtatttgttgaaatgaat	8	5	0	3	rs146528218	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40504879	T	T	40504879	1	4	49	0	1	0	0	0	0	0	0	0	2401	493	17	4		4	C7orf10	7	40504879	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1023073	40504879	118633784	643	53656											
C7orf10	79783	broad.mit.edu	37	chr7	40616762	40616762	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttctcagattcattgcGtagctggatcctcagagagg	11	9	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40616762	T	T	40616762	1	4	49	0	1	0	0	0	0	0	0	0	2401	1160	40	3		3	C7orf10	7	40616762	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	111883	40616762	118521901	644	53657											
C7orf10	79783	broad.mit.edu	37	chr7	40858288	40858288	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaggcagggaatatagatGaatctttgcaggaaggaggg	17	3	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40858288	T	T	40858288	1	4	49	0	1	0	0	0	0	0	0	0	2401	1305	45	3		3	C7orf10	7	40858288	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	241526	40858288	118280375	645	53658											
HECW1	23072	broad.mit.edu	37	chr7	43284408	43284408	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaaataaaagcccacaTttgcatagcactttgcaaat	6	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43284408	A	A	43284408	1	1	49	0	1	0	0	0	0	0	0	0	7109	1508	52	5		5	HECW1	7	43284408	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2426120	43284408	115854255	646	53659											
HECW1	23072	broad.mit.edu	37	chr7	43400571	43400571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcacggtcaaaaactcgGcagctcctgtaagtctcatt	9	11	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43400571	T	T	43400571	3	4	49	1	0	0	0	0	1	0	0	0	7109	1203	42	3	561	3	HECW1	7	43400571	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	116163	43400571	115738092	647	53660											
ADCY1	107	broad.mit.edu	37	chr7	45743309	45743309	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatgggggtggagtgtctGcggcttctcaacgagatcat	14	8	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45743309	T	T	45743309	2	4	49	1	0	0	0	0	0	0	0	1	292	1306	46	3		3	ADCY1	7	45743309	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2342738	45743309	113395354	648	53661											
TNS3	64759	broad.mit.edu	37	chr7	47390403	47390403	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgcaggcagtaagtgttaTaatgggccacactcaaaatg	11	7	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47390403	G	G	47390403	1	3	49	0	1	0	0	0	0	0	0	0	16467	1421	49	5		5	TNS3	7	47390403	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1647094	47390403	111748260	649	53662											
PKD1L1	168507	broad.mit.edu	37	chr7	47952643	47952643	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtctgtattctaagccagtCtcaggtggtcatgatgctgc	11	9	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47952643	G	G	47952643	1	3	49	0	1	0	0	0	0	0	0	0	12059	928	32	4		4	PKD1L1	7	47952643	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	562240	47952643	111186020	650	53663											
POM121L12	285877	broad.mit.edu	37	chr7	53104135	53104135	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttggccttccgtgctggtCcagcccgccccatccgccat	10	19	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104135	A	A	53104135	2	1	49	1	0	0	0	0	0	0	0	1	12336	842	30	3		3	POM121L12	7	53104135	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5151492	53104135	106034528	651	53664											
SEC61G	23480	broad.mit.edu	37	chr7	54826849	54826849	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaccggtgggaagaaactcAcctacccaaccgacacctaa	8	15	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54826849	G	G	54826849	1	3	49	0	1	0	0	0	0	0	0	0	14116	173	6	5		5	SEC61G	7	54826849	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1722714	54826849	104311814	652	53665											
ZNF716	441234	broad.mit.edu	37	chr7	57509956	57509956	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgctcctggaggccaaGcctctgtggccttgtgtcct	11	15	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57509956	T	T	57509956	1	4	49	0	1	0	0	0	0	0	0	0	18247	986	34	3		3	ZNF716	7	57509956	5'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2683107	57509956	101628707	653	53666											
WBSCR17	64409	broad.mit.edu	37	chr7	70729446	70729446	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctagaacttccataccctCcacaatcctagtgctgagta	5	13	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70729446	T	T	70729446	1	4	49	0	1	0	0	0	0	0	0	0	17391	870	30	4		4	WBSCR17	7	70729446	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	13219490	70729446	88409217	654	53667											
WBSCR17	64409	broad.mit.edu	37	chr7	71082458	71082458	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggactacaggtgcccacCaccactcccagctaattttt	7	15	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71082458	G	G	71082458	1	3	49	0	1	0	0	0	0	0	0	0	17391	609	21	4		4	WBSCR17	7	71082458	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	353012	71082458	88056205	655	53668											
BAZ1B	9031	broad.mit.edu	37	chr7	72891240	72891240	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcccgttccttcttagcttGaatggcaagcaaccttctgc	7	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72891240	C	C	72891240	3	2	49	1	0	0	0	0	1	0	0	0	1335	1299	45	4	1952	4	BAZ1B	7	72891240	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1808782	72891240	86247423	656	53669											
PHTF2	57157	broad.mit.edu	37	chr7	77469357	77469357	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactttctattattgtggcaActgatttttgtttacttaag	6	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77469357	T	T	77469357	1	4	49	0	1	0	0	0	0	0	0	0	11958	58	2	5		5	PHTF2	7	77469357	5'Flank	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4578117	77469357	81669306	657	53670											
CD36	948	broad.mit.edu	37	chr7	80295773	80295773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctaggaatctgtcctattGggaaagtcactgcgacatga	10	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80295773	T	T	80295773	3	4	49	1	0	0	0	0	1	0	0	0	3037	1357	47	2	738	2	CD36	7	80295773	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2826416	80295773	78842890	658	53671											
HGF	3082	broad.mit.edu	37	chr7	81334250	81334250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgtttaaacacatacaCagagcgagagagcaaaagag	9	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81334250	A	A	81334250	1	1	49	0	1	0	0	0	0	0	0	0	7152	493	17	3		3	HGF	7	81334250	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1038477	81334250	77804413	659	53672											
HGF	3082	broad.mit.edu	37	chr7	81346574	81346574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatagggcaataatcccaaGgaatgagtggatttcccgtg	11	7	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81346574	T	T	81346574	3	4	49	1	0	0	0	0	1	0	0	0	7152	1000	35	2	839	2	HGF	7	81346574	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	12324	81346574	77792089	660	53673											
CACNA2D1	781	broad.mit.edu	37	chr7	81898452	81898452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctatatctcccatcgcCtctatttgcagaactgtttc	4	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81898452	A	A	81898452	1	1	49	0	1	0	0	0	0	0	0	0	2574	696	24	2		2	CACNA2D1	7	81898452	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	551878	81898452	77240211	661	53674											
ZNF804B	219578	broad.mit.edu	37	chr7	88965765	88965765	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctcctgacgaaatagatAaatataagatcctacagcta	5	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88965765	T	T	88965765	4	4	49	1	0	0	0	0	0	1	0	0	18300	363	13	5	3483	5	ZNF804B	7	88965765	Nonsense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	7067313	88965765	70172898	662	53675											
CCDC132	55610	broad.mit.edu	37	chr7	92952939	92952939	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaggaaaatatatgcagatGatgaacattcttaagccaat	7	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92952939	T	T	92952939	3	4	49	1	0	0	0	0	1	0	0	0	2793	1290	45	3	1996	3	CCDC132	7	92952939	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3987174	92952939	66185724	663	53676											
CCDC132	55610	broad.mit.edu	37	chr7	92978026	92978026	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatttattccctttagggtAttcttggctgaacagtttga	8	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92978026	G	G	92978026	2	3	49	1	0	0	0	0	0	0	0	1	2793	436	16	5		5	CCDC132	7	92978026	Silent	SNP	A	TCGA-17-Z016-01A-01W-0746-08	25087	92978026	66160637	664	53677											
PDK4	5166	broad.mit.edu	37	chr7	95219058	95219058	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaattcattaagaatttgTaaacaaatacttcactaaaa	2	5	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95219058	A	A	95219058	1	1	49	0	1	0	0	0	0	0	0	0	11772	1653	57	5		5	PDK4	7	95219058	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2241032	95219058	63919605	665	53678											
RELN	5649	broad.mit.edu	37	chr7	103183080	103183080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtatttacaatggaaggcCttgtccttgaaatcgctctg	9	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103183080	A	A	103183080	1	1	49	0	1	0	0	0	0	0	0	0	13328	696	24	2		2	RELN	7	103183080	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7964022	103183080	55955583	666	53679											
RELN	5649	broad.mit.edu	37	chr7	103521001	103521001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagtgattaagagcacgaGctctgacaagggggaccaag	13	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103521001	T	T	103521001	1	4	49	0	1	0	0	0	0	0	0	0	13328	986	34	3		3	RELN	7	103521001	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	337921	103521001	55617662	667	53680											
LAMB4	22798	broad.mit.edu	37	chr7	107746440	107746440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaagggtgtggagcttgGtaaagtttatcctcaggttt	12	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107746440	T	T	107746440	3	4	49	1	0	0	0	0	1	0	0	0	8685	1261	44	3	4701	3	LAMB4	7	107746440	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4225439	107746440	51392223	668	53681											
DOCK4	9732	broad.mit.edu	37	chr7	111398697	111398697	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccttgaattcattctcttTatcttttgtgcctttgtgaa	5	8	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111398697	C	C	111398697	3	2	49	1	0	0	0	0	1	0	0	0	4729	1763	61	5	1667	5	DOCK4	7	111398697	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3652257	111398697	47739966	669	53682											
FOXP2	93986	broad.mit.edu	37	chr7	113890381	113890381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccagtaatgggatggctGggtcaaatggcatttctagt	12	7	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113890381	T	T	113890381	1	4	49	0	1	0	0	0	0	0	0	0	6087	1363	47	2		2	FOXP2	7	113890381	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2491684	113890381	45248282	670	53683											
C7orf58	79974	broad.mit.edu	37	chr7	120813341	120813341	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaggttcatggttacatgtGcaggtttgttacataggtaa	11	4	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120813341	C	C	120813341	1	2	49	0	1	0	0	0	0	0	0	0	2430	1334	46	4		4	C7orf58	7	120813341	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6922960	120813341	38325322	671	53684											
SLC13A1	6561	broad.mit.edu	37	chr7	122774738	122774738	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaatagagtacttttacccCttgtctcctgtcttgattct	5	10	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122774738	G	G	122774738	1	3	49	0	1	0	0	0	0	0	0	0	14504	696	24	4		4	SLC13A1	7	122774738	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1961397	122774738	36363925	672	53685											
HYAL4	23553	broad.mit.edu	37	chr7	123516729	123516729	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctaattctatcagtaccagcGagaaacactaaaatcgattt	5	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123516729	C	C	123516729	1	2	49	0	1	0	0	0	0	0	0	0	7536	1073	37	4		4	HYAL4	7	123516729	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	741991	123516729	35621934	673	53686											
SPAM1	6677	broad.mit.edu	37	chr7	123593580	123593580	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatattgggtaaaccaaaGtgtgtaggaagaaataaatg	11	3	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123593580	C	C	123593580	1	2	49	0	1	0	0	0	0	0	0	0	15102	1044	36	4		4	SPAM1	7	123593580	5'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	76851	123593580	35545083	674	53687											
ATP6V1F	9296	broad.mit.edu	37	chr7	128505565	128505565	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctccaaggagcacccatAtgacgccgccaaggactcca	8	18	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128505565	G	G	128505565	3	3	49	1	0	0	0	0	1	0	0	0	1189	449	16	5	299	5	ATP6V1F	7	128505565	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4911985	128505565	30633098	675	53688											
PLXNA4	91584	broad.mit.edu	37	chr7	131914659	131914659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggggtttctcctcctaaCctttggccacagcaagaggg	12	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131914659	A	A	131914659	1	1	49	0	1	0	0	0	0	0	0	0	12217	522	18	3		3	PLXNA4	7	131914659	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3409094	131914659	27224004	676	53689											
PLXNA4	91584	broad.mit.edu	37	chr7	131994150	131994150	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaagcagagtcagtggctCtgcatggtgtcaggcacaga	13	9	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131994150	T	T	131994150	1	4	49	0	1	0	0	0	0	0	0	0	12217	928	32	4		4	PLXNA4	7	131994150	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	79491	131994150	27144513	677	53690											
EXOC4	60412	broad.mit.edu	37	chr7	133363786	133363786	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attctttatgcattgaaaccGatgtcataacttctgttttg	6	7	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133363786	T	T	133363786	1	4	49	0	1	0	0	0	0	0	0	0	5348	1073	37	3		3	EXOC4	7	133363786	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1369636	133363786	25774877	678	53691											
EXOC4	60412	broad.mit.edu	37	chr7	133589100	133589100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaggcgggaacatggataGttttgcctgcgctgtctgtc	13	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133589100	T	T	133589100	1	4	49	0	1	0	0	0	0	0	0	0	5348	1044	36	3		3	EXOC4	7	133589100	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	225314	133589100	25549563	679	53692											
EXOC4	60412	broad.mit.edu	37	chr7	133676178	133676178	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcactttgttgattgtttcCtttgctttgtagaagctttt	7	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133676178	T	T	133676178	1	4	49	0	1	0	0	0	0	0	0	0	5348	696	24	4		4	EXOC4	7	133676178	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	87078	133676178	25462485	680	53693											
LRGUK	136332	broad.mit.edu	37	chr7	133916686	133916686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcccatcccttcttccCttcttttgccttcttcccat	1	20	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133916686	A	A	133916686	1	1	49	0	1	0	0	0	0	0	0	0	9030	696	24	2		2	LRGUK	7	133916686	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	240508	133916686	25221977	681	53694											
LRGUK	136332	broad.mit.edu	37	chr7	133926839	133926839	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatttatagcactaaatgccCacaagagaaagcaggaaaga	8	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133926839	G	G	133926839	1	3	49	0	1	0	0	0	0	0	0	0	9030	609	21	4		4	LRGUK	7	133926839	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	10153	133926839	25211824	682	53695											
CALD1	800	broad.mit.edu	37	chr7	134527801	134527801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggctgcaatggggactcGgggaggaagacaggctcatt	16	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134527801	A	A	134527801	1	1	49	0	1	0	0	0	0	0	0	0	2607	1131	39	4		4	CALD1	7	134527801	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	600962	134527801	24610862	683	53696											
NUP205	23165	broad.mit.edu	37	chr7	135262700	135262700	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcactggatgcagtgaatCtggctcttcttatggcgctt	11	10	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135262700	T	T	135262700	2	4	49	1	0	0	0	0	0	0	0	1	10854	912	32	4		4	NUP205	7	135262700	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	734899	135262700	23875963	684	53697											
CHRM2	1129	broad.mit.edu	37	chr7	136699885	136699885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattggttactggcctttGggacctgtggtgtgtgacct	15	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136699885	T	T	136699885	3	4	49	1	0	0	0	0	1	0	0	0	3408	1339	47	2	275	2	CHRM2	7	136699885	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1437185	136699885	22438778	685	53698											
DGKI	9162	broad.mit.edu	37	chr7	137374668	137374668	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagtcgctctgggctccTtggctggaccatttgccaca	10	14	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137374668	C	C	137374668	3	2	49	1	0	0	0	0	1	0	0	0	4511	1609	56	5	2847	5	DGKI	7	137374668	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	674783	137374668	21763995	686	53699											
TBXAS1	6916	broad.mit.edu	37	chr7	139525083	139525083	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaccaaaattgtaatacatCcttcatcatgctactgtccc	4	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139525083	T	T	139525083	1	4	49	0	1	0	0	0	0	0	0	0	15786	870	30	4		4	TBXAS1	7	139525083	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2150415	139525083	19613580	687	53700											
DENND2A	27147	broad.mit.edu	37	chr7	140287451	140287451	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagacgctgtggcttcttAcctagaatgtcttcatagac	8	11	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140287451	T	T	140287451	5	4	49	1	0	0	0	0	0	0	1	0	4469	405	14	5	1972	5	DENND2A	7	140287451	Splice_Site	SNP	A	TCGA-17-Z016-01A-01W-0746-08	762368	140287451	18851212	688	53701											
MGAM	8972	broad.mit.edu	37	chr7	141730655	141730656	+	Intron	INS	-	T	T													gtgtgcatgtaattgttttaINSttgtacattttcagtatatt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141730656	T	T	141730655	6	5	49	0	1	1	1	0	0	0	0	0	9634	464	16	0		0	MGAM	7	141730655	Intron	INS	-	TCGA-17-Z016-01A-01W-0746-08	1443204	141730655	17408008	689	53702											
TRYX3	136541	broad.mit.edu	37	chr7	141957462	141957462	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatttctctttggtgggtAaagagacaaatatgcacaca	10	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141957462	T	T	141957462	1	4	49	0	1	0	0	0	0	0	0	0	16729	377	13	5		5	TRYX3	7	141957462	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	226807	141957462	17181201	690	53703											
TRPV6	55503	broad.mit.edu	37	chr7	142574389	142574389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctaaagtccctgatgtcCccatccccaccctgaggtct	8	17	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142574389	A	A	142574389	1	1	49	0	1	0	0	0	0	0	0	0	16725	638	22	2		2	TRPV6	7	142574389	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	616927	142574389	16564274	691	53704											
KEL	3792	broad.mit.edu	37	chr7	142642121	142642121	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaagacagtgtcctcaCtcctgggggcaggaacacct	13	11	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142642121	T	T	142642121	1	4	49	0	1	0	0	0	0	0	0	0	8212	580	20	4		4	KEL	7	142642121	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	67732	142642121	16496542	692	53705											
OR2A12	346525	broad.mit.edu	37	chr7	143789231	143789231	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccattgcttttttcagtcagCtttgttgaagatcagatggt	9	7	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143789231	G	G	143789231	1	3	49	0	1	0	0	0	0	0	0	0	11069	812	28	4		4	OR2A12	7	143789231	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1147110	143789231	15349432	693	53706											
CNTNAP2	26047	broad.mit.edu	37	chr7	146002747	146002747	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggcaccctacgaggtccAtaacaaaatggaggcagaaa	12	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146002747	G	G	146002747	1	3	49	0	1	0	0	0	0	0	0	0	3679	232	8	5		5	CNTNAP2	7	146002747	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2213516	146002747	13135916	694	53707											
CNTNAP2	26047	broad.mit.edu	37	chr7	146712857	146712857	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagagaggcctcagatatCtcttaaactatcatgttctg	7	8	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146712857	A	A	146712857	1	1	49	0	1	0	0	0	0	0	0	0	3679	928	32	3		3	CNTNAP2	7	146712857	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	710110	146712857	12425806	695	53708											
CNTNAP2	26047	broad.mit.edu	37	chr7	146753905	146753905	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacattctcactctgtcaccGagtctgcagtgcagtggtat	10	11	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146753905	T	T	146753905	1	4	49	0	1	0	0	0	0	0	0	0	3679	1073	37	3		3	CNTNAP2	7	146753905	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	41048	146753905	12384758	696	53709											
ZNF777	27153	broad.mit.edu	37	chr7	149134032	149134033	+	Intron	DNP	CC	AT	AT													ataagtcttatcttagagacCctgaagaaatgtaatattga							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	149134033	AT	AT	149134032	1	1	49	0	1	0	0	0	0	0	0	0	18279	638	22	2		2	ZNF777	7	149134032	Intron	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	2380127	149134032	10004631	697	53710											
ACTR3C	653857	broad.mit.edu	37	chr7	149949494	149949494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctacaggagcttactggcCtgtccatactctaaagacta	9	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149949494	A	A	149949494	1	1	49	0	1	0	0	0	0	0	0	0	214	696	24	2		2	ACTR3C	7	149949494	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	815462	149949494	9189169	698	53711											
GIMAP8	155038	broad.mit.edu	37	chr7	150175052	150175052	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattgcaggtgggggcgaaTagtagggtattataaaggag	16	2	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150175052	C	C	150175052	1	2	49	0	1	0	0	0	0	0	0	0	6449	1421	49	5		5	GIMAP8	7	150175052	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	225558	150175052	8963611	699	53712											
MLL3	58508	broad.mit.edu	37	chr7	151975561	151975561	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacttcttgaagccctcacCagaagcagatgccagcacca	7	14	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151975561	G	G	151975561	1	3	49	0	1	0	0	0	0	0	0	0	9715	609	21	4		4	MLL3	7	151975561	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1800509	151975561	7163102	700	53713											
DPP6	1804	broad.mit.edu	37	chr7	154374723	154374723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtggttccaggtattcCtctctgcaaacacctgctct	9	13	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154374723	A	A	154374723	1	1	49	0	1	0	0	0	0	0	0	0	4770	696	24	2		2	DPP6	7	154374723	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2399162	154374723	4763940	701	53714											
DPP6	1804	broad.mit.edu	37	chr7	154379486	154379486	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcattacatcaccatgtctCttcctcttcactgcctgcgt	4	15	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154379486	A	A	154379486	1	1	49	0	1	0	0	0	0	0	0	0	4770	928	32	3		3	DPP6	7	154379486	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4763	154379486	4759177	702	53715											
CSMD1	64478	broad.mit.edu	37	chr8	2808759	2808759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctaaatattcataataccCcttccacagtgaattgacga	4	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2808759	A	A	2808759	3	1	49	1	0	0	0	0	1	0	0	0	3978	623	22	2	636	2	CSMD1	8	2808759	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08		2808759	143555263	703	53716											
CSMD1	64478	broad.mit.edu	37	chr8	2876020	2876020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacatcgagtttcgctgcCgctccagagcccatttgcca	9	15	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2876020	T	T	2876020	3	4	49	1	0	0	0	0	1	0	0	0	3978	652	23	4	2762	4	CSMD1	8	2876020	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	67261	2876020	143488002	704	53717											
CSMD1	64478	broad.mit.edu	37	chr8	2886769	2886769	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagctccactagagaagctCaccactgacataagccatct	6	13	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2886769	A	A	2886769	1	1	49	0	1	0	0	0	0	0	0	0	3978	841	29	3		3	CSMD1	8	2886769	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	10749	2886769	143477253	705	53718											
CSMD1	64478	broad.mit.edu	37	chr8	3165275	3165275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagtggaggttgttgtcatAcggagctggatagccagggg	18	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3165275	T	T	3165275	3	4	49	1	0	0	0	0	1	0	0	0	3978	391	14	5	6986	5	CSMD1	8	3165275	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	278506	3165275	143198747	706	53719											
CSMD1	64478	broad.mit.edu	37	chr8	3424006	3424006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacctccaccagcccctcCtggtgtgctgtcagtgtgct	10	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3424006	T	T	3424006	1	4	49	0	1	0	0	0	0	0	0	0	3978	696	24	4		4	CSMD1	8	3424006	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	258731	3424006	142940016	707	53720											
CSMD1	64478	broad.mit.edu	37	chr8	4368264	4368264	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccttgcctcctctcttccTtccctcttccctccttccct	1	22	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4368264	A	A	4368264	1	1	49	0	1	0	0	0	0	0	0	0	3978	1624	56	5		5	CSMD1	8	4368264	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	944258	4368264	141995758	708	53721											
SPAG11A	653423	broad.mit.edu	37	chr8	7721265	7721265	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggatccatgtgagagacCggagtatgatcctcagtgcg	14	9	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7721265	A	A	7721265	1	1	49	0	1	0	0	0	0	0	0	0	15092	667	23	1		1	SPAG11A	8	7721265	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3353001	7721265	138642757	709	53722											
MSRA	4482	broad.mit.edu	37	chr8	9954744	9954744	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagttaagcttaagtatgttCttcaactttttaattaatca	4	6	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9954744	T	T	9954744	1	4	49	0	1	0	0	0	0	0	0	0	9981	928	32	4		4	MSRA	8	9954744	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2233479	9954744	136409278	710	53723											
MSRA	4482	broad.mit.edu	37	chr8	10231181	10231181	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcaggggattccgggaagGaagccagcatgactgcaggc	17	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10231181	T	T	10231181	1	4	49	0	1	0	0	0	0	0	0	0	9981	1189	41	3		3	MSRA	8	10231181	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	276437	10231181	136132841	711	53724											
XKR6	286046	broad.mit.edu	37	chr8	10856265	10856265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagagaagcacccctaccCctgaaacctgaccaccccct	6	19	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10856265	A	A	10856265	1	1	49	0	1	0	0	0	0	0	0	0	17562	638	22	2		2	XKR6	8	10856265	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	625084	10856265	135507757	712	53725											
XKR6	286046	broad.mit.edu	37	chr8	11011183	11011183	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttaattggtggtagcagCagtaatcctctaattcttag	8	8	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11011183	T	T	11011183	1	4	49	0	1	0	0	0	0	0	0	0	17562	725	25	4		4	XKR6	8	11011183	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	154918	11011183	135352839	713	53726											
SGCZ	137868	broad.mit.edu	37	chr8	14596351	14596352	+	Intron	DNP	GG	CT	CT													ggagaacgggccgcaggacaGggagtaagtggaaattggaa							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	14596352	CT	CT	14596351	1	2	49	0	1	0	0	0	0	0	0	0	14317	1015	35	4		4	SGCZ	8	14596351	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	3585168	14596351	131767671	714	53727											
MTMR7	9108	broad.mit.edu	37	chr8	17228593	17228593	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtacacgtcgtggcaatctCtttcctgaggtatgatgagc	11	9	1	3	rs148455057		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17228593	A	A	17228593	3	1	49	1	0	0	0	0	1	0	0	0	10042	913	32	3	1767	3	MTMR7	8	17228593	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2632242	17228593	129135429	715	53728											
SLC18A1	6570	broad.mit.edu	37	chr8	20029103	20029103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcatttgcagaaggcctGctaggggctaagctccacct	12	11	0	2	rs6987705	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20029103	T	T	20029103	1	4	49	0	1	0	0	0	0	0	0	0	14538	1334	46	3		3	SLC18A1	8	20029103	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2800510	20029103	126334919	716	53729											
DOK2	9046	broad.mit.edu	37	chr8	21738300	21738300	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgaactcaaggccaggCccttctgactccaggccctc	10	15	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21738300	T	T	21738300	1	4	49	0	1	0	0	0	0	0	0	0	4737	754	26	4		4	DOK2	8	21738300	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1709197	21738300	124625722	717	53730											
ADAM7	8756	broad.mit.edu	37	chr8	24364913	24364913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctcatgtgtatgtgtgCacatgcatgtctgtgtgtgg	14	6	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24364913	A	A	24364913	1	1	49	0	1	0	0	0	0	0	0	0	251	725	25	3		3	ADAM7	8	24364913	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2626613	24364913	121999109	718	53731											
PPP2R2A	5520	broad.mit.edu	37	chr8	25664612	25664612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcctgggcaacagacCgagactctgtctcaaaaaga	9	13	2	3	rs141291605	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25664612	A	A	25664612	1	1	49	0	1	0	0	0	0	0	0	0	12485	667	23	1		1	PPP2R2A	8	25664612	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1299699	25664612	120699410	719	53732											
PTK2B	2185	broad.mit.edu	37	chr8	27287677	27287677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcgagctcctagagtaaGttctgggatcacccatctcc	8	13	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27287677	T	T	27287677	1	4	49	0	1	0	0	0	0	0	0	0	12869	1044	36	3		3	PTK2B	8	27287677	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1623065	27287677	119076345	720	53733											
PNOC	5368	broad.mit.edu	37	chr8	28172051	28172051	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgccatgagactatgcCaggttaatatgctggaggga	14	7	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28172051	T	T	28172051	1	4	49	0	1	0	0	0	0	0	0	0	12257	609	21	4		4	PNOC	8	28172051	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	884374	28172051	118191971	721	53734											
TEX15	56154	broad.mit.edu	37	chr8	30699628	30699628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaatttgagatgtttttGtttatgcactctgatactgg	11	4	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30699628	T	T	30699628	3	4	49	1	0	0	0	0	1	0	0	0	15901	1368	48	3	1479	3	TEX15	8	30699628	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2527577	30699628	115664394	722	53735											
NRG1	3084	broad.mit.edu	37	chr8	31657802	31657802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatagagcaggtggtggggCgaggtaacatctgatgtgag	19	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31657802	A	A	31657802	1	1	49	0	1	0	0	0	0	0	0	0	10742	783	27	3		3	NRG1	8	31657802	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	958174	31657802	114706220	723	53736											
NRG1	3084	broad.mit.edu	37	chr8	32251694	32251694	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctttaatctatatctggtCtttatctctcacctttatct	3	10	6	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32251694	A	A	32251694	1	1	49	0	1	0	0	0	0	0	0	0	10742	928	32	3		3	NRG1	8	32251694	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	593892	32251694	114112328	724	53737											
NRG1	3084	broad.mit.edu	37	chr8	32307800	32307800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagtagcagcacctataGttccagctacttgggaggct	12	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32307800	T	T	32307800	1	4	49	0	1	0	0	0	0	0	0	0	10742	1044	36	3		3	NRG1	8	32307800	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	56106	32307800	114056222	725	53738											
NRG1	3084	broad.mit.edu	37	chr8	32330012	32330012	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttattctttattttccctGatattaatccctaatgaaat	2	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32330012	A	A	32330012	1	1	49	0	1	0	0	0	0	0	0	0	10742	1305	45	4		4	NRG1	8	32330012	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	22212	32330012	114034010	726	53739											
UNC5D	137970	broad.mit.edu	37	chr8	35504028	35504028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaaatacccaggattatGgaaacatgggctcctgtgtc	10	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35504028	T	T	35504028	1	4	49	0	1	0	0	0	0	0	0	0	17121	1363	47	2		2	UNC5D	8	35504028	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3174016	35504028	110859994	727	53740											
UNC5D	137970	broad.mit.edu	37	chr8	35542001	35542001	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagtctctcggtccctggaTgcctgactcacagcacctgg	10	15	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35542001	A	A	35542001	1	1	49	0	1	0	0	0	0	0	0	0	17121	1479	51	5		5	UNC5D	8	35542001	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	37973	35542001	110822021	728	53741											
KCNU1	157855	broad.mit.edu	37	chr8	36763324	36763324	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggacaaggtgactctggTaggtgatcttgcatcatcaa	11	7	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36763324	A	A	36763324	5	1	49	1	0	0	0	0	0	0	1	0	8163	1652	57	5	2186	5	KCNU1	8	36763324	Splice_Site	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1221323	36763324	109600698	729	53742											
ZMAT4	79698	broad.mit.edu	37	chr8	40600534	40600534	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtcaggagttcaagacCagcctggccaacatggtgaa	13	9	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40600534	G	G	40600534	1	3	49	0	1	0	0	0	0	0	0	0	17820	609	21	4		4	ZMAT4	8	40600534	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3837210	40600534	105763488	730	53743											
ANK1	286	broad.mit.edu	37	chr8	41554090	41554090	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaccccgggcgtcaaccatGaagctcaccagaaacctagg	9	16	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41554090	T	T	41554090	3	4	49	1	0	0	0	0	1	0	0	0	620	1281	45	3	3288	3	ANK1	8	41554090	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	953556	41554090	104809932	731	53744											
ANK1	286	broad.mit.edu	37	chr8	41577349	41577349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgaggtggtctccctgagCcgccatgtgaattggggaca	15	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41577349	A	A	41577349	3	1	49	1	0	0	0	0	1	0	0	0	620	739	26	3	5194	3	ANK1	8	41577349	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	23259	41577349	104786673	732	53745											
PLAT	5327	broad.mit.edu	37	chr8	42045149	42045149	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctttcattcagccctcaGgaggctcccctctctgcccc	6	21	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42045149	A	A	42045149	1	1	49	0	1	0	0	0	0	0	0	0	12116	1015	35	4		4	PLAT	8	42045149	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	467800	42045149	104318873	733	53746											
CHRNA6	8973	broad.mit.edu	37	chr8	42611340	42611340	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccacctgggcattgtgtgCgtggttggggtgcggtagtg	18	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42611340	T	T	42611340	2	4	49	1	0	0	0	0	0	0	0	1	3418	755	27	4		4	CHRNA6	8	42611340	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	566191	42611340	103752682	734	53747											
SNTG1	54212	broad.mit.edu	37	chr8	51557425	51557425	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacattactctcttgccttTtgtaggcattttggactgtt	7	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51557425	C	C	51557425	1	2	49	0	1	0	0	0	0	0	0	0	14988	1856	64	5		5	SNTG1	8	51557425	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	8946085	51557425	94806597	735	53748											
SNTG1	54212	broad.mit.edu	37	chr8	51621609	51621609	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgatttaaatgcctcAtaactcctttcagcatttta	4	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51621609	T	T	51621609	1	4	49	0	1	0	0	0	0	0	0	0	14988	232	8	5		5	SNTG1	8	51621609	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	64184	51621609	94742413	736	53749											
SNTG1	54212	broad.mit.edu	37	chr8	51700113	51700113	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaaaagaaactctacacaGatgttcactgcagcattatt	5	9	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51700113	T	T	51700113	1	4	49	0	1	0	0	0	0	0	0	0	14988	957	33	3		3	SNTG1	8	51700113	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	78504	51700113	94663909	737	53750											
PXDNL	137902	broad.mit.edu	37	chr8	52323874	52323874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtatcagctgcagcgtgtgCtcaaaaatctcccctgctct	8	14	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52323874	A	A	52323874	3	1	49	1	0	0	0	0	1	0	0	0	12956	796	28	3	2425	3	PXDNL	8	52323874	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	623761	52323874	94040148	738	53751											
PXDNL	137902	broad.mit.edu	37	chr8	52373873	52373873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttccccgccacagggctAgtatgggaagggtgtgacct	14	11	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52373873	G	G	52373873	1	3	49	0	1	0	0	0	0	0	0	0	12956	435	15	5		5	PXDNL	8	52373873	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	49999	52373873	93990149	739	53752											
PXDNL	137902	broad.mit.edu	37	chr8	52412134	52412135	+	Intron	DNP	CC	AA	AA													attaactctgttttgtagtgCcaaggtacaggctctgcctc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52412135	AA	AA	52412134	1	1	49	0	1	0	0	0	0	0	0	0	12956	754	26	3		3	PXDNL	8	52412134	Intron	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	38261	52412134	93951888	740	53753											
PXDNL	137902	broad.mit.edu	37	chr8	52412432	52412432	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaattatgaatttcactGgccccaaccactatatatca	4	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52412432	A	A	52412432	1	1	49	0	1	0	0	0	0	0	0	0	12956	1363	47	4		4	PXDNL	8	52412432	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	298	52412432	93951590	741	53754											
PXDNL	137902	broad.mit.edu	37	chr8	52547932	52547932	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccagaaggaagaaaattAagattagagtggagataaat	10	3	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52547932	C	C	52547932	1	2	49	0	1	0	0	0	0	0	0	0	12956	377	13	5		5	PXDNL	8	52547932	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	135500	52547932	93816090	742	53755											
ST18	9705	broad.mit.edu	37	chr8	53124626	53124626	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaaaaaaaagtaatataGggtaaatcttacctgagctc	8	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53124626	A	A	53124626	1	1	49	0	1	0	0	0	0	0	0	0	15330	1015	35	4		4	ST18	8	53124626	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	576694	53124626	93239396	743	53756											
ST18	9705	broad.mit.edu	37	chr8	53243101	53243101	+	Intron	DEL	C	-	-													ataaatggtgggcccaggaaCcttttggtagaatatatggc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53243101	-	-	53243101	6	5	49	0	1	1	0	1	0	0	0	0	15330	522	18	0		0	ST18	8	53243101	Intron	DEL	C	TCGA-17-Z016-01A-01W-0746-08	118475	53243101	93120921	744	53757											
TRIM55	84675	broad.mit.edu	37	chr8	67061742	67061742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaacatagtgggtatccatAcctaaatagacatcttcagg	7	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67061742	T	T	67061742	1	4	49	0	1	0	0	0	0	0	0	0	16654	406	14	5		5	TRIM55	8	67061742	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	13818641	67061742	79302280	745	53758											
C8orf46	254778	broad.mit.edu	37	chr8	67422390	67422390	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcgagcatatggaaaatctCtggtaagtaaaataagcctg	9	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67422390	T	T	67422390	2	4	49	1	0	0	0	0	0	0	0	1	2457	912	32	4		4	C8orf46	8	67422390	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	360648	67422390	78941632	746	53759											
SULF1	23213	broad.mit.edu	37	chr8	70540227	70540227	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catagagtacgataacctaaGctatttaagtaaaactaaat	5	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70540227	A	A	70540227	1	1	49	0	1	0	0	0	0	0	0	0	15488	986	34	4		4	SULF1	8	70540227	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3117837	70540227	75823795	747	53760											
NCOA2	10499	broad.mit.edu	37	chr8	71305459	71305459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagaaggggaaaacaatcCcccaaatgctcagtctggta	9	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71305459	A	A	71305459	1	1	49	0	1	0	0	0	0	0	0	0	10324	638	22	2		2	NCOA2	8	71305459	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	765232	71305459	75058563	748	53761											
EYA1	2138	broad.mit.edu	37	chr8	72237743	72237743	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtagagggaatcaacaCacactatttgtttaaaaaga	9	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72237743	A	A	72237743	1	1	49	0	1	0	0	0	0	0	0	0	5371	493	17	3		3	EYA1	8	72237743	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	932284	72237743	74126279	749	53762											
TRPA1	8989	broad.mit.edu	37	chr8	72973926	72973926	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacgctaccagaataggacGatatcatcagtttaacaatc	6	11	2	1	rs141174965		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72973926	T	T	72973926	4	4	49	1	0	0	0	0	0	1	0	0	16702	1059	37	3	2565	3	TRPA1	8	72973926	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	736183	72973926	73390096	750	53763											
KCNB2	9312	broad.mit.edu	37	chr8	73729098	73729099	+	Intron	DNP	GG	TT	TT													cacactgtgactcatcccgaGgcctccagatgtggaacttc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	73729099	TT	TT	73729098	1	4	49	0	1	0	0	0	0	0	0	0	8083	1015	35	2		2	KCNB2	8	73729098	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	755172	73729098	72634924	751	53764											
STAU2	27067	broad.mit.edu	37	chr8	74601357	74601357	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattcaaatggtcctcacaAaagcagaataagtagaaata	6	7	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74601357	G	G	74601357	1	3	49	0	1	0	0	0	0	0	0	0	15391	29	1	5		5	STAU2	8	74601357	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	872259	74601357	71762665	752	53765											
RALYL	138046	broad.mit.edu	37	chr8	85211381	85211381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtgattcttaagagaaGtgtttctagcttttcctcat	8	6	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85211381	T	T	85211381	1	4	49	0	1	0	0	0	0	0	0	0	13128	1044	36	3		3	RALYL	8	85211381	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	10610024	85211381	61152641	753	53766											
RALYL	138046	broad.mit.edu	37	chr8	85330046	85330046	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctccaattccagaaaactCctagcacttctcaaatggga	5	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85330046	A	A	85330046	1	1	49	0	1	0	0	0	0	0	0	0	13128	870	30	3		3	RALYL	8	85330046	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	118665	85330046	61033976	754	53767											
RALYL	138046	broad.mit.edu	37	chr8	85339872	85339872	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccatatgtattactcatcttCccatgtcctgtctctcctct	3	15	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85339872	G	G	85339872	1	3	49	0	1	0	0	0	0	0	0	0	13128	870	30	4		4	RALYL	8	85339872	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	9826	85339872	61024150	755	53768											
CNBD1	168975	broad.mit.edu	37	chr8	88117908	88117908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagagtatagctgctgtgCcttcattctacagattatat	7	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88117908	A	A	88117908	1	1	49	0	1	0	0	0	0	0	0	0	3623	754	26	3		3	CNBD1	8	88117908	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2778036	88117908	58246114	756	53769											
SLC26A7	115111	broad.mit.edu	37	chr8	92301722	92301722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagattccacaaaagaaGggagatggggcgtggtagta	15	5	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92301722	T	T	92301722	1	4	49	0	1	0	0	0	0	0	0	0	14636	1015	35	2		2	SLC26A7	8	92301722	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4183814	92301722	54062300	757	53770											
PGCP	10404	broad.mit.edu	37	chr8	97834636	97834636	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tactgatttcatattctttgGatatgtgtacccagtagtgg	9	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97834636	T	T	97834636	1	4	49	0	1	0	0	0	0	0	0	0	11881	1189	41	3		3	PGCP	8	97834636	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5532914	97834636	48529386	758	53771											
NCALD	83988	broad.mit.edu	37	chr8	102948555	102948555	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatttaataatcatggttaGgacttgtcaggtgaggaggc	13	4	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102948555	A	A	102948555	1	1	49	0	1	0	0	0	0	0	0	0	10296	1015	35	4		4	NCALD	8	102948555	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5113919	102948555	43415467	759	53772											
ODF1	4956	broad.mit.edu	37	chr8	103572954	103572954	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcggcagctgtgtcaagatcGagtctccttgctacccttgc	10	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103572954	T	T	103572954	4	4	49	1	0	0	0	0	0	1	0	0	10921	1059	37	3	601	3	ODF1	8	103572954	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	624399	103572954	42791068	760	53773											
RIMS2	9699	broad.mit.edu	37	chr8	105259300	105259300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctacaggaatacagaagCtagggaatggtggcttggac	14	7	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105259300	A	A	105259300	1	1	49	0	1	0	0	0	0	0	0	0	13479	812	28	3		3	RIMS2	8	105259300	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1686346	105259300	41104722	761	53774											
ZFPM2	23414	broad.mit.edu	37	chr8	106814331	106814331	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgatgtgaaaaatcccaGtgtccccttagtggatgggg	13	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106814331	A	A	106814331	3	1	49	1	0	0	0	0	1	0	0	0	17784	1029	36	4	2051	4	ZFPM2	8	106814331	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1555031	106814331	39549691	762	53775											
TRHR	7201	broad.mit.edu	37	chr8	110099765	110099765	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacgagacagtcagtgaActgaaccaaacacagcttca	8	10	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110099765	T	T	110099765	3	4	49	1	0	0	0	0	1	0	0	0	16604	40	2	5	26	5	TRHR	8	110099765	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3285434	110099765	36264257	763	53776											
CSMD3	114788	broad.mit.edu	37	chr8	113678762	113678762	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttattaaatagttaataCtatttttgaaagcaatggta	5	4	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113678762	T	T	113678762	1	4	49	0	1	0	0	0	0	0	0	0	3980	580	20	4		4	CSMD3	8	113678762	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3578997	113678762	32685260	764	53777											
CSMD3	114788	broad.mit.edu	37	chr8	113956186	113956186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttatcatacttttgcaCaatcctttttatgtttgtag	6	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113956186	A	A	113956186	1	1	49	0	1	0	0	0	0	0	0	0	3980	493	17	3		3	CSMD3	8	113956186	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	277424	113956186	32407836	765	53778											
CSMD3	114788	broad.mit.edu	37	chr8	113987988	113987988	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcttggctctctttcagctCattctctaattagaatcatt	4	10	6	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113987988	T	T	113987988	1	4	49	0	1	0	0	0	0	0	0	0	3980	841	29	4		4	CSMD3	8	113987988	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	31802	113987988	32376034	766	53779											
CSMD3	114788	broad.mit.edu	37	chr8	114041779	114041779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatcacaatagatgcagCaaaaacattcaacaagatcc	5	10	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114041779	A	A	114041779	1	1	49	0	1	0	0	0	0	0	0	0	3980	725	25	3		3	CSMD3	8	114041779	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	53791	114041779	32322243	767	53780											
DEPDC6	64798	broad.mit.edu	37	chr8	120940614	120940614	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgtcatcagaatttccAaagtaattgctaatttttct	6	7	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120940614	G	G	120940614	1	3	49	0	1	0	0	0	0	0	0	0	4483	145	5	5		5	DEPDC6	8	120940614	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	6898835	120940614	25423408	768	53781											
ATAD2	29028	broad.mit.edu	37	chr8	124364426	124364426	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctccttgctctgccatgCcctgctccaaagagacacct	6	18	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124364426	T	T	124364426	1	4	49	0	1	0	0	0	0	0	0	0	1075	754	26	4		4	ATAD2	8	124364426	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3423812	124364426	21999596	769	53782											
FER1L6	654463	broad.mit.edu	37	chr8	124877250	124877250	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattctccatccagctttgtTccattgctggtgaggagctg	10	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124877250	C	C	124877250	1	2	49	0	1	0	0	0	0	0	0	0	5872	1798	62	5		5	FER1L6	8	124877250	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	512824	124877250	21486772	770	53783											
ASAP1	50807	broad.mit.edu	37	chr8	131087183	131087183	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggagctgagggagcaCatcagggagtgactttggtg	19	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131087183	T	T	131087183	1	4	49	0	1	0	0	0	0	0	0	0	1014	493	17	4		4	ASAP1	8	131087183	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6209933	131087183	15276839	771	53784											
TG	7038	broad.mit.edu	37	chr8	133905132	133905132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtgtgcatgtgtgtgtgGtatgcctgtgtgcatgtgtg	17	5	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133905132	T	T	133905132	1	4	49	0	1	0	0	0	0	0	0	0	15936	1276	44	3		3	TG	8	133905132	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2817949	133905132	12458890	772	53785											
KHDRBS3	10656	broad.mit.edu	37	chr8	136637632	136637632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagtttcaatacattgaGtgctgcatcaactcagctgc	9	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136637632	T	T	136637632	1	4	49	0	1	0	0	0	0	0	0	0	8218	1044	36	3		3	KHDRBS3	8	136637632	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2732500	136637632	9726390	773	53786											
COL22A1	169044	broad.mit.edu	37	chr8	139809190	139809190	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcatcccgagatttgaaagGattagatattttctcatcag	7	7	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139809190	T	T	139809190	1	4	49	0	1	0	0	0	0	0	0	0	3713	1189	41	3		3	COL22A1	8	139809190	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3171558	139809190	6554832	774	53787											
COL22A1	169044	broad.mit.edu	37	chr8	139867801	139867801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagctttcaaagccagcCgggaaactccctgtccaaag	8	15	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139867801	A	A	139867801	1	1	49	0	1	0	0	0	0	0	0	0	3713	667	23	1		1	COL22A1	8	139867801	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	58611	139867801	6496221	775	53788											
KCNK9	51305	broad.mit.edu	37	chr8	140631689	140631689	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaacattcgaatgccatctTagagccacataaaggcttta	8	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140631689	A	A	140631689	1	1	49	0	1	0	0	0	0	0	0	0	8142	1769	61	5		5	KCNK9	8	140631689	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	763888	140631689	5732333	776	53789											
GPIHBP1	338328	broad.mit.edu	37	chr8	144297260	144297261	+	Missense_Mutation	DNP	GG	TT	TT													cctgtgcaatgtcccaccctGgcaaagctcccgagtccagg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	144297261	TT	TT	144297260	3	4	49	1	0	0	0	0	1	0	0	0	6677	1357	47	2	436	2	GPIHBP1	8	144297260	Missense_Mutation	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	3665571	144297260	2066762	777	53790											
SCRIB	23513	broad.mit.edu	37	chr8	144895816	144895816	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcactcacttgcccacgTccccgggcagtgcctgcaga	11	16	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144895816	C	C	144895816	3	2	49	1	0	0	0	0	1	0	0	0	14050	1667	58	5	4666	5	SCRIB	8	144895816	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	598556	144895816	1468206	778	53791											
KIFC2	90990	broad.mit.edu	37	chr8	145693120	145693121	+	Nonsense_Mutation	DNP	GG	TT	TT													gaggagctgaagcagcagctGgaacagcaggaggaggagtt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	145693121	TT	TT	145693120	4	4	49	1	0	0	0	0	0	1	0	0	8383	1335	47	2	661	2	KIFC2	8	145693120	Nonsense_Mutation	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	797304	145693120	670902	779	53792											
GLIS3	169792	broad.mit.edu	37	chr9	4074961	4074961	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagacttgctcaaggtcaCatagttagggagcagcatag	12	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4074961	T	T	4074961	1	4	49	0	1	0	0	0	0	0	0	0	6511	493	17	4		4	GLIS3	9	4074961	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08		4074961	137138470	780	53793											
JAK2	3717	broad.mit.edu	37	chr9	5041349	5041349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttgacaggtacggcgtGctacatgagcatcaacatgc	12	10	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5041349	T	T	5041349	1	4	49	0	1	0	0	0	0	0	0	0	8008	1334	46	3		3	JAK2	9	5041349	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	966388	5041349	136172082	781	53794											
KIAA1432	57589	broad.mit.edu	37	chr9	5729038	5729038	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctgctcccctctcccctCtctgtctccagtgttccttg	5	19	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5729038	T	T	5729038	1	4	49	0	1	0	0	0	0	0	0	0	8303	928	32	4		4	KIAA1432	9	5729038	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	687689	5729038	135484393	782	53795											
KIAA2026	158358	broad.mit.edu	37	chr9	5962096	5962096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaattttggatctttcctGctttctcttgtgggcattta	8	8	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5962096	T	T	5962096	1	4	49	0	1	0	0	0	0	0	0	0	8340	1334	46	3		3	KIAA2026	9	5962096	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	233058	5962096	135251335	783	53796											
PTPRD	5789	broad.mit.edu	37	chr9	8814405	8814405	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggagggtgagaaggagGggaagaccccacagaaggaa	18	6	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8814405	T	T	8814405	1	4	49	0	1	0	0	0	0	0	0	0	12907	1247	43	2		2	PTPRD	9	8814405	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2852309	8814405	132399026	784	53797											
PTPRD	5789	broad.mit.edu	37	chr9	8951531	8951531	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctactttgttacctagtaGctgttttacgttcagcatat	6	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8951531	C	C	8951531	1	2	49	0	1	0	0	0	0	0	0	0	12907	986	34	4		4	PTPRD	9	8951531	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	137126	8951531	132261900	785	53798											
PTPRD	5789	broad.mit.edu	37	chr9	9762500	9762500	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctcctctgacattttacCatagcaatcaagagggacta	6	11	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9762500	T	T	9762500	1	4	49	0	1	0	0	0	0	0	0	0	12907	609	21	4		4	PTPRD	9	9762500	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	810969	9762500	131450931	786	53799											
PTPRD	5789	broad.mit.edu	37	chr9	10192600	10192600	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctgcactattcaaatgaCtgtgctctcaaattgggtaa	7	8	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10192600	G	G	10192600	1	3	49	0	1	0	0	0	0	0	0	0	12907	580	20	4		4	PTPRD	9	10192600	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	430100	10192600	131020831	787	53800											
SLC24A2	25769	broad.mit.edu	37	chr9	19743169	19743169	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaaattggttccactgTctgcatcacatcagcattag	7	9	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19743169	A	A	19743169	1	1	49	0	1	0	0	0	0	0	0	0	14580	1682	58	5		5	SLC24A2	9	19743169	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	9550569	19743169	121470262	788	53801											
LINGO2	158038	broad.mit.edu	37	chr9	28411838	28411838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagtctttgaagaatcacCgcattgttttccacagtggc	8	9	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28411838	A	A	28411838	1	1	49	0	1	0	0	0	0	0	0	0	8888	667	23	1		1	LINGO2	9	28411838	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8668669	28411838	112801593	789	53802											
IL11RA	3590	broad.mit.edu	37	chr9	34658453	34658453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttaaacacacactttgGgaagtggtggggaagtgatg	13	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34658453	T	T	34658453	1	4	49	0	1	0	0	0	0	0	0	0	7693	1247	43	2		2	IL11RA	9	34658453	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6246615	34658453	106554978	790	53803											
RNF38	152006	broad.mit.edu	37	chr9	36356416	36356416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatcactagaaataagggGtgggaatgcagcatatggta	14	4	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36356416	A	A	36356416	3	1	49	1	0	0	0	0	1	0	0	0	13601	1261	44	4	782	4	RNF38	9	36356416	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1697963	36356416	104857015	791	53804											
PAX5	5079	broad.mit.edu	37	chr9	36899661	36899661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgccagccaacccccaggActacagggttggggccgggc	14	16	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36899661	G	G	36899661	1	3	49	0	1	0	0	0	0	0	0	0	11576	290	10	5		5	PAX5	9	36899661	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	543245	36899661	104313770	792	53805											
PAX5	5079	broad.mit.edu	37	chr9	37010194	37010194	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctaagccagggacagttgGgctgagttggcagtcacacc	13	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37010194	A	A	37010194	1	1	49	0	1	0	0	0	0	0	0	0	11576	1247	43	4		4	PAX5	9	37010194	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	110533	37010194	104203237	793	53806											
FAM75A6	389730	broad.mit.edu	37	chr9	43628906	43628906	+	Intron	DEL	C	-	-													ttccacacacggaccccccaCccccacagtcctcacaactg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43628906	-	-	43628906	6	5	49	0	1	1	0	1	0	0	0	0	5674	522	18	0		0	FAM75A6	9	43628906	Intron	DEL	C	TCGA-17-Z016-01A-01W-0746-08	6618712	43628906	97584525	794	53807											
PGM5	5239	broad.mit.edu	37	chr9	71006716	71006716	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggaaagcagagaattaatGaacacatctggagctaacat	9	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71006716	A	A	71006716	1	1	49	0	1	0	0	0	0	0	0	0	11896	1305	45	4		4	PGM5	9	71006716	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	27377810	71006716	70206715	795	53808											
FLJ46321	389763	broad.mit.edu	37	chr9	84607070	84607070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctagtacccaaccactacCcttgcctcaaaccctgcccc	4	21	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84607070	A	A	84607070	3	1	49	1	0	0	0	0	1	0	0	0	5990	623	22	2	1699	2	FLJ46321	9	84607070	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	13600354	84607070	56606361	796	53809											
NTRK2	4915	broad.mit.edu	37	chr9	87549120	87549120	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacattgttctgaaaagggaGctaggcgaaggagcctttgg	14	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87549120	C	C	87549120	3	2	49	1	0	0	0	0	1	0	0	0	10802	962	34	4	1806	4	NTRK2	9	87549120	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2942050	87549120	53664311	797	53810											
NTRK2	4915	broad.mit.edu	37	chr9	87599839	87599839	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtgttacaaaactttaAgcagtattaacatataaaac	4	5	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87599839	T	T	87599839	1	4	49	0	1	0	0	0	0	0	0	0	10802	87	3	5		5	NTRK2	9	87599839	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	50719	87599839	53613592	798	53811											
ROR2	4920	broad.mit.edu	37	chr9	94473493	94473493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtggtgtatgtgtgtgGtatgtgaggtgtgtgtgtgg	21	0	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94473493	T	T	94473493	1	4	49	0	1	0	0	0	0	0	0	0	13638	1276	44	3		3	ROR2	9	94473493	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6873654	94473493	46739938	799	53812											
CENPP	401541	broad.mit.edu	37	chr9	95107895	95107895	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctttccttttatttggtgGcatttcattttgcatatttc	5	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95107895	C	C	95107895	1	2	49	0	1	0	0	0	0	0	0	0	3270	1218	42	4		4	CENPP	9	95107895	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	634402	95107895	46105536	800	53813											
PHF2	5253	broad.mit.edu	37	chr9	96438821	96438821	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgccgggagctccctgctCtgttggcccaagtgggctgt	14	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96438821	G	G	96438821	1	3	49	0	1	0	0	0	0	0	0	0	11925	928	32	4		4	PHF2	9	96438821	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1330926	96438821	44774610	801	53814											
FBP2	8789	broad.mit.edu	37	chr9	97333606	97333606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgatgatggttttggctcCccaaactaggctctcaggac	10	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97333606	A	A	97333606	1	1	49	0	1	0	0	0	0	0	0	0	5763	638	22	2		2	FBP2	9	97333606	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	894785	97333606	43879825	802	53815											
INVS	27130	broad.mit.edu	37	chr9	102879511	102879511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacacccagaccgacgtgGccgttgtagtccccgatagc	10	14	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102879511	T	T	102879511	1	4	49	0	1	0	0	0	0	0	0	0	7857	1218	42	3		3	INVS	9	102879511	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5545905	102879511	38333920	803	53816											
GRIN3A	116443	broad.mit.edu	37	chr9	104459564	104459564	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaattgtggaatacatcAgtatagttaactctttgtac	6	6	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104459564	T	T	104459564	1	4	49	0	1	0	0	0	0	0	0	0	6849	203	7	5		5	GRIN3A	9	104459564	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1580053	104459564	36753867	804	53817											
GRIN3A	116443	broad.mit.edu	37	chr9	104477577	104477577	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaataatggtgtgggtggacCatgggcgtcccattacatgg	14	7	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104477577	T	T	104477577	1	4	49	0	1	0	0	0	0	0	0	0	6849	609	21	4		4	GRIN3A	9	104477577	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	18013	104477577	36735854	805	53818											
OR13C8	138802	broad.mit.edu	37	chr9	107332204	107332204	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtggtgattatattctaTggaaccatcttcttcatgta	7	7	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107332204	C	C	107332204	2	2	49	1	0	0	0	0	0	0	0	1	11032	1471	51	5		5	OR13C8	9	107332204	Silent	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2854627	107332204	33881227	806	53819											
KIAA0368	23392	broad.mit.edu	37	chr9	114158127	114158127	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttccttacctccttccttCtatacaaactgctccttgcc	2	18	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114158127	A	A	114158127	1	1	49	0	1	0	0	0	0	0	0	0	8241	928	32	3		3	KIAA0368	9	114158127	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6825923	114158127	27055304	807	53820											
SUSD1	64420	broad.mit.edu	37	chr9	114849523	114849523	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagtggcacgatctctgCtcactgcagcctctgctcac	10	15	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114849523	G	G	114849523	1	3	49	0	1	0	0	0	0	0	0	0	15525	812	28	4		4	SUSD1	9	114849523	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	691396	114849523	26363908	808	53821											
ORM1	5004	broad.mit.edu	37	chr9	117093844	117093844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggctctttttctcttcCagagggaggccgagaacatg	12	10	2	3	rs79569527		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117093844	A	A	117093844	1	1	49	0	1	0	0	0	0	0	0	0	11361	609	21	2		2	ORM1	9	117093844	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2244321	117093844	24119587	809	53822											
DEC1	50514	broad.mit.edu	37	chr9	118121200	118121200	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtagaactgaacgtgtttTtatatgtgtagcttttctaa	8	4	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118121200	C	C	118121200	1	2	49	0	1	0	0	0	0	0	0	0	4414	1856	64	5		5	DEC1	9	118121200	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1027356	118121200	23092231	810	53823											
PAPPA	5069	broad.mit.edu	37	chr9	118938423	118938423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatcagaaaagagaaaaGgacagggacaatagggagac	14	4	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118938423	T	T	118938423	1	4	49	0	1	0	0	0	0	0	0	0	11526	1015	35	2		2	PAPPA	9	118938423	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	817223	118938423	22275008	811	53824											
ASTN2	23245	broad.mit.edu	37	chr9	119370212	119370212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaccactgcatgccagCctgggcgacagagcgagact	12	14	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119370212	A	A	119370212	1	1	49	0	1	0	0	0	0	0	0	0	1069	754	26	3		3	ASTN2	9	119370212	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	431789	119370212	21843219	812	53825											
ASTN2	23245	broad.mit.edu	37	chr9	119498709	119498709	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagacatcctagcactccTcatcactgcttgggtagagg	9	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119498709	A	A	119498709	1	1	49	0	1	0	0	0	0	0	0	0	1069	1566	54	5		5	ASTN2	9	119498709	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	128497	119498709	21714722	813	53826											
ASTN2	23245	broad.mit.edu	37	chr9	119582938	119582938	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgaagtggcatcgtagggcAggggcagcgtctgctgcagg	18	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119582938	T	T	119582938	3	4	49	1	0	0	0	0	1	0	0	0	1069	188	7	5	2134	5	ASTN2	9	119582938	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	84229	119582938	21630493	814	53827											
ASTN2	23245	broad.mit.edu	37	chr9	119695574	119695574	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactcttcatacctcccagtCaatgctgtaaaattggttga	6	10	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119695574	G	G	119695574	1	3	49	0	1	0	0	0	0	0	0	0	1069	841	29	4		4	ASTN2	9	119695574	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	112636	119695574	21517857	815	53828											
ASTN2	23245	broad.mit.edu	37	chr9	119995266	119995266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgctcagggatgagttctGgcattatctacttccttccc	8	12	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119995266	A	A	119995266	1	1	49	0	1	0	0	0	0	0	0	0	1069	1363	47	4		4	ASTN2	9	119995266	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	299692	119995266	21218165	816	53829											
ASTN2	23245	broad.mit.edu	37	chr9	120159797	120159797	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaaaccaacactggagatCatatctggtgtattatgagc	9	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120159797	A	A	120159797	1	1	49	0	1	0	0	0	0	0	0	0	1069	841	29	3		3	ASTN2	9	120159797	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	164531	120159797	21053634	817	53830											
TLR4	7099	broad.mit.edu	37	chr9	120464669	120464669	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagcttggtttttgacaCgttggattggaagtgcttgg	13	6	1	1	rs80066786	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120464669	T	T	120464669	1	4	49	0	1	0	0	0	0	0	0	0	16076	551	19	4		4	TLR4	9	120464669	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	304872	120464669	20748762	818	53831											
TLR4	7099	broad.mit.edu	37	chr9	120474728	120474728	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagccacctctctaccttaAtattgacaggaaaccccatc	4	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120474728	G	G	120474728	3	3	49	1	0	0	0	0	1	0	0	0	16076	101	4	5	332	5	TLR4	9	120474728	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	10059	120474728	20738703	819	53832											
TLR4	7099	broad.mit.edu	37	chr9	120477085	120477085	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgctaatctcaaggagcTtccagtgcagagggaataaa	12	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120477085	C	C	120477085	1	2	49	0	1	0	0	0	0	0	0	0	16076	1624	56	5		5	TLR4	9	120477085	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2357	120477085	20736346	820	53833											
DBC1	1620	broad.mit.edu	37	chr9	121993608	121993608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaataattccagttatgcaCaagaccctattcactcttgc	4	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121993608	A	A	121993608	1	1	49	0	1	0	0	0	0	0	0	0	4280	493	17	3		3	DBC1	9	121993608	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1516523	121993608	19219823	821	53834											
RABEPK	10244	broad.mit.edu	37	chr9	127996228	127996228	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatacagaaggggaaatctAtgacgattgtattgtgactg	12	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127996228	G	G	127996228	3	3	49	1	0	0	0	0	1	0	0	0	13071	449	16	5	1114	5	RABEPK	9	127996228	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	6002620	127996228	13217203	822	53835											
ZNF79	7633	broad.mit.edu	37	chr9	130206133	130206133	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggttgcagtgagctgagaTcgtgccactgcactccagcc	13	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130206133	G	G	130206133	1	3	49	0	1	0	0	0	0	0	0	0	18290	1450	50	5		5	ZNF79	9	130206133	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2209905	130206133	11007298	823	53836											
NCS1	23413	broad.mit.edu	37	chr9	132984865	132984865	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggtacagagaggaggggCgagttgaagacccctcccca	16	10	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132984865	T	T	132984865	1	4	49	0	1	0	0	0	0	0	0	0	10335	783	27	4		4	NCS1	9	132984865	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2778732	132984865	8228566	824	53837											
NTNG2	84628	broad.mit.edu	37	chr9	135073796	135073796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcgaggtgcgggaccgcttCgccatctttgccggccccga	13	15	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135073796	A	A	135073796	3	1	49	1	0	0	0	0	1	0	0	0	10800	883	31	3	663	3	NTNG2	9	135073796	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2088931	135073796	6139635	825	53838											
TTF1	7270	broad.mit.edu	37	chr9	135252745	135252745	+	Intron	SNP	T	C	C													tggtgtgagtgcatgtggtgTgtgtgagtgcatgtggtgtg					rs140561030	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135252745	C	C	135252745	1	2	49	0	1	0	0	0	0	0	0	0	16844	1711	59	5		5	TTF1	9	135252745	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	178949	135252745	5960686	826	53839	255	2									
TTF1	7270	broad.mit.edu	37	chr9	135252752	135252752	+	Intron	SNP	G	A	A													agtgcatgtggtgtgtgtgaGtgcatgtggtgtgtgtgagt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135252752	A	A	135252752	1	1	49	0	1	0	0	0	0	0	0	0	16844	1044	36	4		4	TTF1	9	135252752	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	7	135252752	5960679	827	53840	255	2									
ADAMTSL2	9719	broad.mit.edu	37	chr9	136411975	136411975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgattttaggctgagaGgaacgtgcgtttgcccctcc	12	10	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136411975	T	T	136411975	1	4	49	0	1	0	0	0	0	0	0	0	275	1015	35	2		2	ADAMTSL2	9	136411975	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1159223	136411975	4801456	828	53841											
CACNA1B	774	broad.mit.edu	37	chr9	140873143	140873143	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgagcattgtacttacacaGgtggtagacatttgtgtctg	11	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140873143	C	C	140873143	1	2	49	0	1	0	0	0	0	0	0	0	2565	1015	35	4		4	CACNA1B	9	140873143	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4461168	140873143	340288	829	53842											
ADARB2	105	broad.mit.edu	37	chr10	1566802	1566803	+	Intron	DNP	GG	TT	TT													tttctattgcctttttgtttGgttttcacaggaatctattt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1566803	TT	TT	1566802	1	4	49	0	1	0	0	0	0	0	0	0	283	1363	47	2		2	ADARB2	10	1566802	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08		1566802	133967945	830	53843											
SFMBT2	57713	broad.mit.edu	37	chr10	7371811	7371811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcagccttggaagtcaccCgaggtcactcgggctgtccc	11	15	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7371811	T	T	7371811	1	4	49	0	1	0	0	0	0	0	0	0	14271	667	23	4		4	SFMBT2	10	7371811	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5805009	7371811	128162936	831	53844											
CCDC3	83643	broad.mit.edu	37	chr10	13104266	13104266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctcctgaacaattggcCtgcttttatcttgtgactga	8	10	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13104266	A	A	13104266	1	1	49	0	1	0	0	0	0	0	0	0	2831	696	24	2		2	CCDC3	10	13104266	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5732455	13104266	122430481	832	53845											
FRMD4A	55691	broad.mit.edu	37	chr10	14395487	14395487	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcccagcccaggaggtggTaggaattcctcaagacaggg	15	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14395487	C	C	14395487	1	2	49	0	1	0	0	0	0	0	0	0	6111	1653	57	5		5	FRMD4A	10	14395487	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1291221	14395487	121139260	833	53846											
CDNF	441549	broad.mit.edu	37	chr10	14870148	14870148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaatttactataccaggCggttttcttttcctttggtg	9	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14870148	A	A	14870148	3	1	49	1	0	0	0	0	1	0	0	0	3198	768	27	3	336	3	CDNF	10	14870148	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	474661	14870148	120664599	834	53847											
HSPA14	51182	broad.mit.edu	37	chr10	14891656	14891656	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtcataaattaataaAcctcagaaagtatcacttgt	4	7	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14891656	C	C	14891656	1	2	49	0	1	0	0	0	0	0	0	0	7476	58	2	5		5	HSPA14	10	14891656	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	21508	14891656	120643091	835	53848											
SLC39A12	221074	broad.mit.edu	37	chr10	18259031	18259031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgagttcactttaggtGtgtgtatttgttgctgggtt	12	3	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18259031	T	T	18259031	1	4	49	0	1	0	0	0	0	0	0	0	14729	1392	48	3		3	SLC39A12	10	18259031	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3367375	18259031	117275716	836	53849											
SLC39A12	221074	broad.mit.edu	37	chr10	18331872	18331872	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttttatcttaggcaaagTgtgtctctttcaattcatta	5	6	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18331872	A	A	18331872	1	1	49	0	1	0	0	0	0	0	0	0	14729	1711	59	5		5	SLC39A12	10	18331872	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	72841	18331872	117202875	837	53850											
CACNB2	783	broad.mit.edu	37	chr10	18751331	18751331	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagctagcactacaggtgcaCatcaccatgcccaggtaatt	8	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18751331	T	T	18751331	1	4	49	0	1	0	0	0	0	0	0	0	2579	493	17	4		4	CACNB2	10	18751331	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	419459	18751331	116783416	838	53851											
PLXDC2	84898	broad.mit.edu	37	chr10	20466206	20466207	+	Intron	INS	-	T	T													ggttgagtaatctctttcccINSctccaagttgcctgttagtc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20466207	T	T	20466206	6	5	49	0	1	1	1	0	0	0	0	0	12213	638	22	0		0	PLXDC2	10	20466206	Intron	INS	-	TCGA-17-Z016-01A-01W-0746-08	1714875	20466206	115068541	839	53852											
NEBL	10529	broad.mit.edu	37	chr10	21134261	21134261	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatccagtgatgaccttcCtttaatctccttctcaaaat	3	11	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21134261	A	A	21134261	4	1	49	1	0	0	0	0	0	1	0	0	10398	690	24	2	1959	2	NEBL	10	21134261	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	668055	21134261	114400486	840	53853											
MLLT10	8028	broad.mit.edu	37	chr10	21957873	21957873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggatcagatgtgagaggaAtggagaacctcaggatcaac	13	6	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21957873	G	G	21957873	1	3	49	0	1	0	0	0	0	0	0	0	9719	116	4	5		5	MLLT10	10	21957873	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	823612	21957873	113576874	841	53854											
KIAA1217	56243	broad.mit.edu	37	chr10	24574543	24574543	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctattttggttactgtagCcttgtagtatagtttgaagt	10	4	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24574543	G	G	24574543	1	3	49	0	1	0	0	0	0	0	0	0	8286	754	26	4		4	KIAA1217	10	24574543	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2616670	24574543	110960204	842	53855											
GPR158	57512	broad.mit.edu	37	chr10	25736993	25736993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacatcatgcaggggatgtTgtcttttgtgtctgacttct	11	7	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25736993	A	A	25736993	1	1	49	0	1	0	0	0	0	0	0	0	6728	1827	63	5		5	GPR158	10	25736993	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1162450	25736993	109797754	843	53856											
GPR158	57512	broad.mit.edu	37	chr10	25857403	25857403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagaactaggaagaaaaCcaagagaatgtgacatcatg	11	5	1	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25857403	A	A	25857403	1	1	49	0	1	0	0	0	0	0	0	0	6728	522	18	3		3	GPR158	10	25857403	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	120410	25857403	109677344	844	53857											
MYO3A	53904	broad.mit.edu	37	chr10	26453730	26453730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaggtgcgggggctgcCtaagggtggctcctgcgatg	19	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26453730	T	T	26453730	1	4	49	0	1	0	0	0	0	0	0	0	10170	696	24	4		4	MYO3A	10	26453730	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	596327	26453730	109081017	845	53858											
MYO3A	53904	broad.mit.edu	37	chr10	26463598	26463598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttatctgcgttgatgggcCcgcaaacatttttaataaaa	7	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26463598	A	A	26463598	1	1	49	0	1	0	0	0	0	0	0	0	10170	638	22	2		2	MYO3A	10	26463598	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	9868	26463598	109071149	846	53859											
MYO3A	53904	broad.mit.edu	37	chr10	26482619	26482620	+	Intron	DNP	GG	TT	TT													tagaagaaaaggaaagaagaGgggaaacagacgtttattaa							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26482620	TT	TT	26482619	1	4	49	0	1	0	0	0	0	0	0	0	10170	1015	35	2		2	MYO3A	10	26482619	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	19021	26482619	109052128	847	53860											
GAD2	2572	broad.mit.edu	37	chr10	26540387	26540387	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagtaatggcgcctgctTcataggattgttatgaagat	10	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26540387	A	A	26540387	1	1	49	0	1	0	0	0	0	0	0	0	6240	1798	62	5		5	GAD2	10	26540387	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	57768	26540387	108994360	848	53861											
YME1L1	10730	broad.mit.edu	37	chr10	27409636	27409636	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttcctttaaaacatggctCaagtaacagtgtcaataacc	6	9	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27409636	G	G	27409636	1	3	49	0	1	0	0	0	0	0	0	0	17614	841	29	4		4	YME1L1	10	27409636	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	869249	27409636	108125111	849	53862											
ZEB1	6935	broad.mit.edu	37	chr10	31810697	31810697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagtcactgcccagttaCccacaatcgtggccattgct	7	15	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31810697	A	A	31810697	3	1	49	1	0	0	0	0	1	0	0	0	17749	507	18	3	2474	3	ZEB1	10	31810697	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4401061	31810697	103724050	850	53863											
KIF5B	3799	broad.mit.edu	37	chr10	32326079	32326079	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatctcaggttaccaaatccAgtttggtaagtaagatgcaa	8	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32326079	T	T	32326079	1	4	49	0	1	0	0	0	0	0	0	0	8376	203	7	5		5	KIF5B	10	32326079	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	515382	32326079	103208668	851	53864											
PARD3	56288	broad.mit.edu	37	chr10	34541539	34541539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcagccctggatcatccCgacacagtggagtttatcac	9	13	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34541539	A	A	34541539	1	1	49	0	1	0	0	0	0	0	0	0	11537	667	23	1		1	PARD3	10	34541539	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2215460	34541539	100993208	852	53865											
TMEM72	643236	broad.mit.edu	37	chr10	45430531	45430532	+	Frame_Shift_Ins	INS	-	C	C													cgacacccatcattccccctINSccccaggccccactcttcct							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45430532	C	C	45430531	7	5	49	1	0	1	1	0	0	0	0	0	16324	1538	54	0	795	0	TMEM72	10	45430531	Frame_Shift_Ins	INS	-	TCGA-17-Z016-01A-01W-0746-08	10888992	45430531	90104216	853	53866											
SGMS1	259230	broad.mit.edu	37	chr10	52113679	52113679	+	Intron	SNP	C	A	A													ttcaaggagaactacaaaacCactgctcaatgaaataaaag							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52113679	A	A	52113679	1	1	49	0	1	0	0	0	0	0	0	0	14327	609	21	2		2	SGMS1	10	52113679	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6683148	52113679	83421068	854	53867	256	2									
SGMS1	259230	broad.mit.edu	37	chr10	52113683	52113683	+	Intron	SNP	G	C	C													aggagaactacaaaaccactGctcaatgaaataaaagagga							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52113683	C	C	52113683	1	2	49	0	1	0	0	0	0	0	0	0	14327	1334	46	4		4	SGMS1	10	52113683	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4	52113683	83421064	855	53868	256	2									
PRKG1	5592	broad.mit.edu	37	chr10	53107134	53107134	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaaggcattaggtatcaaTagactatgtacaatattctt	8	5	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53107134	C	C	53107134	1	2	49	0	1	0	0	0	0	0	0	0	12628	1421	49	5		5	PRKG1	10	53107134	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	993451	53107134	82427613	856	53869											
PCDH15	65217	broad.mit.edu	37	chr10	55892655	55892655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtagatttaataaaacagCaccaaccctcatggcttcac	5	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55892655	A	A	55892655	3	1	49	1	0	0	0	0	1	0	0	0	11605	710	25	3	5665	3	PCDH15	10	55892655	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2785521	55892655	79642092	857	53870											
ZNF365	22891	broad.mit.edu	37	chr10	64393750	64393750	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaaatatgaccccctacgAactggcccattcaaaaggat	6	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64393750	T	T	64393750	1	4	49	0	1	0	0	0	0	0	0	0	17995	261	9	5		5	ZNF365	10	64393750	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	8501095	64393750	71140997	858	53871											
JMJD1C	221037	broad.mit.edu	37	chr10	64950488	64950488	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaaaaaagacagaaaaTgccagctttcaaggtaaaga	9	5	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64950488	G	G	64950488	1	3	49	0	1	0	0	0	0	0	0	0	8020	1479	51	5		5	JMJD1C	10	64950488	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	556738	64950488	70584259	859	53872											
DNAJC12	56521	broad.mit.edu	37	chr10	69565163	69565163	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagaattgtctcaaggtttCccttctgaggaataccttct	8	9	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69565163	T	T	69565163	1	4	49	0	1	0	0	0	0	0	0	0	4671	870	30	4		4	DNAJC12	10	69565163	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4614675	69565163	65969584	860	53873											
STOX1	219736	broad.mit.edu	37	chr10	70645139	70645139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagactggaccaaaggaaaaGcctttccaaaagcctaggtc	9	11	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70645139	T	T	70645139	3	4	49	1	0	0	0	0	1	0	0	0	15437	962	34	3	1597	3	STOX1	10	70645139	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1079976	70645139	64889608	861	53874											
C10orf27	219793	broad.mit.edu	37	chr10	72543290	72543290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggaacaggcactttagggGgagaaatggtaatatctttt	13	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72543290	T	T	72543290	1	4	49	0	1	0	0	0	0	0	0	0	1611	1247	43	2		2	C10orf27	10	72543290	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1898151	72543290	62991457	862	53875											
DLG5	9231	broad.mit.edu	37	chr10	79552078	79552078	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgcttctgggtcctggttCcggatccttcccccgcatgt	12	14	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79552078	A	A	79552078	1	1	49	0	1	0	0	0	0	0	0	0	4598	870	30	3		3	DLG5	10	79552078	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7008788	79552078	55982669	863	53876											
DLG5	9231	broad.mit.edu	37	chr10	79565530	79565530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcctccgaaaaaaggacCggcgtgcagccgctgacagc	12	13	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79565530	A	A	79565530	3	1	49	1	0	0	0	0	1	0	0	0	4598	652	23	1	726	1	DLG5	10	79565530	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	13452	79565530	55969217	864	53877											
PPIF	10105	broad.mit.edu	37	chr10	81108691	81108691	+	Intron	DEL	G	-	-													agctgcctcccatgggggttGgcaataatgggaatggaatg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81108691	-	-	81108691	6	5	49	0	1	1	0	1	0	0	0	0	12424	1363	47	0		0	PPIF	10	81108691	Intron	DEL	G	TCGA-17-Z016-01A-01W-0746-08	1543161	81108691	54426056	865	53878											
NRG3	10718	broad.mit.edu	37	chr10	83908288	83908288	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcctacctatttgtcCaggttgttttctttgcattt	5	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83908288	G	G	83908288	1	3	49	0	1	0	0	0	0	0	0	0	10744	609	21	4		4	NRG3	10	83908288	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2799597	83908288	51626459	866	53879											
NRG3	10718	broad.mit.edu	37	chr10	84151204	84151204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcagtgtgtcagctctGcacctggccacatttcctat	10	13	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84151204	T	T	84151204	1	4	49	0	1	0	0	0	0	0	0	0	10744	1334	46	3		3	NRG3	10	84151204	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	242916	84151204	51383543	867	53880											
NRG3	10718	broad.mit.edu	37	chr10	84541973	84541973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtcatgagggctctgccCttacaaatagattaatgcag	9	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84541973	A	A	84541973	1	1	49	0	1	0	0	0	0	0	0	0	10744	696	24	2		2	NRG3	10	84541973	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	390769	84541973	50992774	868	53881											
GRID1	2894	broad.mit.edu	37	chr10	87628808	87628808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgggggtcgcagagcaGggaggagatgcggtggttgt	20	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87628808	T	T	87628808	3	4	49	1	0	0	0	0	1	0	0	0	6837	991	35	2	2163	2	GRID1	10	87628808	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3086835	87628808	47905939	869	53882											
GRID1	2894	broad.mit.edu	37	chr10	87791498	87791498	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttcacagcagctctgctCaaaactctctaacagcttcc	4	15	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87791498	G	G	87791498	1	3	49	0	1	0	0	0	0	0	0	0	6837	841	29	4		4	GRID1	10	87791498	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	162690	87791498	47743249	870	53883											
SNCG	6623	broad.mit.edu	37	chr10	88719864	88719864	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggcggagaacatcgcggtCacctccggggtggtgcgcaa	17	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88719864	T	T	88719864	2	4	49	1	0	0	0	0	0	0	0	1	14957	813	29	4		4	SNCG	10	88719864	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	928366	88719864	46814883	871	53884											
EXOC6	54536	broad.mit.edu	37	chr10	94688135	94688135	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaactattatcgaaaacaaAgaaagaaacaagcaagactg	6	6	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94688135	T	T	94688135	4	4	49	1	0	0	0	0	0	1	0	0	5350	64	3	5	1052	5	EXOC6	10	94688135	Nonsense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	5968271	94688135	40846612	872	53885											
TM9SF3	56889	broad.mit.edu	37	chr10	98290160	98290160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagctacctttatatagcCtattccctttctggaatcat	4	11	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98290160	A	A	98290160	1	1	49	0	1	0	0	0	0	0	0	0	16102	696	24	2		2	TM9SF3	10	98290160	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3602025	98290160	37244587	873	53886											
SLIT1	6585	broad.mit.edu	37	chr10	98900038	98900038	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgccatgtgttttcccctAactgtcaccagcccacactg	7	15	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98900038	G	G	98900038	1	3	49	0	1	0	0	0	0	0	0	0	14853	377	13	5		5	SLIT1	10	98900038	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	609878	98900038	36634709	874	53887											
PYROXD2	84795	broad.mit.edu	37	chr10	100143858	100143858	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacagcccacagtctcaacGgctgagggtggacgtgctgg	14	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100143858	A	A	100143858	1	1	49	0	1	0	0	0	0	0	0	0	12975	1131	39	4		4	PYROXD2	10	100143858	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1243820	100143858	35390889	875	53888											
PDZD7	79955	broad.mit.edu	37	chr10	102781463	102781463	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctagtggctgtgggaacGtcataaattgcagagcatta	11	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102781463	A	A	102781463	1	1	49	0	1	0	0	0	0	0	0	0	11798	1160	40	4		4	PDZD7	10	102781463	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2637605	102781463	32753284	876	53889											
C10orf76	79591	broad.mit.edu	37	chr10	103750203	103750203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaggtgctggtattaCaggcgtgagccatggcgccc	13	13	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103750203	A	A	103750203	1	1	49	0	1	0	0	0	0	0	0	0	1627	493	17	3		3	C10orf76	10	103750203	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	968740	103750203	31784544	877	53890											
COL17A1	1308	broad.mit.edu	37	chr10	105817909	105817909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggttctcacccacctgcaGtggtggtcttgccctttgtg	12	13	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105817909	C	C	105817909	3	2	49	1	0	0	0	0	1	0	0	0	3706	1029	36	4	3395	4	COL17A1	10	105817909	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2067706	105817909	29716838	878	53891											
SORCS3	22986	broad.mit.edu	37	chr10	106847822	106847822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctggaggggcaaggccCagtgagcttggaaagaggaa	17	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106847822	A	A	106847822	1	1	49	0	1	0	0	0	0	0	0	0	15046	609	21	2		2	SORCS3	10	106847822	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1029913	106847822	28686925	879	53892											
SORCS3	22986	broad.mit.edu	37	chr10	106916581	106916581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttcttgtcagccactccCatctcagagggaatgttaat	8	11	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106916581	T	T	106916581	1	4	49	0	1	0	0	0	0	0	0	0	15046	609	21	4		4	SORCS3	10	106916581	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	68759	106916581	28618166	880	53893											
SORCS3	22986	broad.mit.edu	37	chr10	106916757	106916757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaccacatggcattcaaCgtttcctatcatgttccttc	6	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106916757	A	A	106916757	1	1	49	0	1	0	0	0	0	0	0	0	15046	551	19	3		3	SORCS3	10	106916757	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	176	106916757	28617990	881	53894											
SORCS3	22986	broad.mit.edu	37	chr10	106989540	106989540	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctatttaggggcctcagagCagtgtacgttggccttggtg	14	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106989540	G	G	106989540	1	3	49	0	1	0	0	0	0	0	0	0	15046	725	25	4		4	SORCS3	10	106989540	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	72783	106989540	28545207	882	53895											
SORCS3	22986	broad.mit.edu	37	chr10	107021946	107021946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaccttgtagcctcattGtctctggggttaccaatatc	8	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107021946	T	T	107021946	1	4	49	0	1	0	0	0	0	0	0	0	15046	1392	48	3		3	SORCS3	10	107021946	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	32406	107021946	28512801	883	53896											
SORCS1	114815	broad.mit.edu	37	chr10	108363620	108363620	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgaggaatccatgtcCttgtctagtcttggtccatt	8	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108363620	T	T	108363620	1	4	49	0	1	0	0	0	0	0	0	0	15044	696	24	4		4	SORCS1	10	108363620	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1341674	108363620	27171127	884	53897											
SORCS1	114815	broad.mit.edu	37	chr10	108373737	108373737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaacctcaggtagcctccCttccaccatcccatgcaccc	4	22	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108373737	A	A	108373737	1	1	49	0	1	0	0	0	0	0	0	0	15044	696	24	2		2	SORCS1	10	108373737	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	10117	108373737	27161010	885	53898											
SORCS1	114815	broad.mit.edu	37	chr10	108377961	108377961	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcattcccagctgagacctGcactgtgatggtattcattc	10	11	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108377961	C	C	108377961	3	2	49	1	0	0	0	0	1	0	0	0	15044	1328	46	4	898	4	SORCS1	10	108377961	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4224	108377961	27156786	886	53899											
KIAA1598	57698	broad.mit.edu	37	chr10	118854857	118854857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtttccatccccacctaTacttctggcaattaccattt	3	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118854857	C	C	118854857	1	2	49	0	1	0	0	0	0	0	0	0	8316	1421	49	5		5	KIAA1598	10	118854857	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	10476896	118854857	16679890	887	53900											
EIF3A	8661	broad.mit.edu	37	chr10	120801390	120801390	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactgcaaatgatactgaaGgaaagatgaaagaccagttt	9	6	1	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120801390	A	A	120801390	1	1	49	0	1	0	0	0	0	0	0	0	5052	1015	35	4		4	EIF3A	10	120801390	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1946533	120801390	14733357	888	53901											
GRK5	2869	broad.mit.edu	37	chr10	121085871	121085871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctgggaggaagagtgtGtgtgtttgtgtgtgtcttgg	17	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121085871	T	T	121085871	1	4	49	0	1	0	0	0	0	0	0	0	6858	1392	48	3		3	GRK5	10	121085871	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	284481	121085871	14448876	889	53902											
TIAL1	7073	broad.mit.edu	37	chr10	121341671	121341671	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccacagtaaaatgcagcagGagtacttactggaagtatct	9	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121341671	A	A	121341671	1	1	49	0	1	0	0	0	0	0	0	0	16012	1189	41	4		4	TIAL1	10	121341671	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	255800	121341671	14193076	890	53903											
NSMCE4A	54780	broad.mit.edu	37	chr10	123725004	123725004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtatagtcaaattcagacCagacatcagtgatatacaag	8	7	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123725004	A	A	123725004	1	1	49	0	1	0	0	0	0	0	0	0	10772	609	21	2		2	NSMCE4A	10	123725004	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2383333	123725004	11809743	891	53904											
ACADSB	36	broad.mit.edu	37	chr10	124797418	124797418	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattaaattcagggactgTaatgatagcataatgaaccc	7	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124797418	C	C	124797418	1	2	49	0	1	0	0	0	0	0	0	0	115	1653	57	5		5	ACADSB	10	124797418	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1072414	124797418	10737329	892	53905											
CPXM2	119587	broad.mit.edu	37	chr10	125593234	125593234	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacctactcaaggccggtgGcaactgcctcccagttaacg	9	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125593234	C	C	125593234	1	2	49	0	1	0	0	0	0	0	0	0	3870	1218	42	4		4	CPXM2	10	125593234	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	795816	125593234	9941513	893	53906											
CPXM2	119587	broad.mit.edu	37	chr10	125601809	125601809	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacctgtgtctgtccagacCctcaaaagctagacccaaaa	7	13	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125601809	T	T	125601809	1	4	49	0	1	0	0	0	0	0	0	0	3870	638	22	4		4	CPXM2	10	125601809	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8575	125601809	9932938	894	53907											
CPXM2	119587	broad.mit.edu	37	chr10	125692082	125692082	+	Intron	SNP	G	T	T													gaatgactctccatccttctGtacggacaggctctccctgt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125692082	T	T	125692082	1	4	49	0	1	0	0	0	0	0	0	0	3870	1392	48	3		3	CPXM2	10	125692082	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	90273	125692082	9842665	895	53908	257	2									
CPXM2	119587	broad.mit.edu	37	chr10	125692084	125692084	+	Intron	SNP	A	T	T													atgactctccatccttctgtAcggacaggctctccctgtcc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125692084	T	T	125692084	1	4	49	0	1	0	0	0	0	0	0	0	3870	406	14	5		5	CPXM2	10	125692084	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2	125692084	9842663	896	53909	257	2									
STIM1	6786	broad.mit.edu	37	chr11	4091385	4091385	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagatgatgaaggactTggaggggttacaccgagctg	16	5	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4091385	C	C	4091385	3	2	49	1	0	0	0	0	1	0	0	0	15401	1821	63	5	765	5	STIM1	11	4091385	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08		4091385	130915131	897	53910											
HBE1	3046	broad.mit.edu	37	chr11	5338104	5338104	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtacacagtatatccatgtGtgtactttgcattgtctgtc	8	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5338104	A	A	5338104	1	1	49	0	1	0	0	0	0	0	0	0	7046	1392	48	4		4	HBE1	11	5338104	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1246719	5338104	129668412	898	53911											
OR52E4	390081	broad.mit.edu	37	chr11	5906249	5906249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaggccttcaatacctgtGgttctcatgtctgtgttatg	9	8	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5906249	T	T	5906249	3	4	49	1	0	0	0	0	1	0	0	0	11210	1348	47	2	729	2	OR52E4	11	5906249	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	568145	5906249	129100267	899	53912											
OR56A4	120793	broad.mit.edu	37	chr11	6023495	6023495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaagtgggaaccacacGtgctcaaggccttggccaca	13	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6023495	A	A	6023495	3	1	49	1	0	0	0	0	1	0	0	0	11229	1145	40	4	215	4	OR56A4	11	6023495	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	117246	6023495	128983021	900	53913											
HPX	3263	broad.mit.edu	37	chr11	6452953	6452953	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataatcccatgaggggtcccGacttccttctccagccgctt	8	15	1	1	rs73398890	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6452953	T	T	6452953	2	4	49	1	0	0	0	0	0	0	0	1	7413	1045	37	3		3	HPX	11	6452953	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	429458	6452953	128553563	901	53914											
OR10A5	144124	broad.mit.edu	37	chr11	6865181	6865181	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaataacatttcatcagCcactttctcttgggaatctt	5	11	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6865181	A	A	6865181	1	1	49	0	1	0	0	0	0	0	0	0	10987	754	26	3		3	OR10A5	11	6865181	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	412228	6865181	128141335	902	53915											
PPFIBP2	8495	broad.mit.edu	37	chr11	7539040	7539041	+	Intron	DNP	GG	TT	TT													tgccggggcatccattccagGgcaccatcagtcttcagcgg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	7539041	TT	TT	7539040	1	4	49	0	1	0	0	0	0	0	0	0	12410	1247	43	2		2	PPFIBP2	11	7539040	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	673859	7539040	127467476	903	53916											
PPFIBP2	8495	broad.mit.edu	37	chr11	7631349	7631349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcgctatccctgagtaGcccagcatcagcccaggccc	12	16	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7631349	T	T	7631349	1	4	49	0	1	0	0	0	0	0	0	0	12410	986	34	3		3	PPFIBP2	11	7631349	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	92309	7631349	127375167	904	53917											
EIF4G2	1982	broad.mit.edu	37	chr11	10825278	10825278	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctaccagtctggttgatCagttctaactctactttgtc	6	10	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10825278	G	G	10825278	1	3	49	0	1	0	0	0	0	0	0	0	5079	841	29	4		4	EIF4G2	11	10825278	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3193929	10825278	124181238	905	53918											
FAR1	84188	broad.mit.edu	37	chr11	13743206	13743206	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattatagggggaaacttgcAccctgggtggtgataggatt	14	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13743206	T	T	13743206	1	4	49	0	1	0	0	0	0	0	0	0	5731	174	6	5		5	FAR1	11	13743206	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2917928	13743206	121263310	906	53919											
PDE3B	5140	broad.mit.edu	37	chr11	14802532	14802532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgataaaggggatatcaCcaccaatcctacagagatac	7	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14802532	A	A	14802532	1	1	49	0	1	0	0	0	0	0	0	0	11732	522	18	3		3	PDE3B	11	14802532	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1059326	14802532	120203984	907	53920											
INSC	387755	broad.mit.edu	37	chr11	15257008	15257008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggatggaagaaaatgcCgtggaaggataggcccggtg	16	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15257008	A	A	15257008	1	1	49	0	1	0	0	0	0	0	0	0	7834	667	23	1		1	INSC	11	15257008	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	454476	15257008	119749508	908	53921											
PLEKHA7	144100	broad.mit.edu	37	chr11	16824567	16824567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccaagtcctggaggacCctgtcttgttcacagaagat	9	11	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16824567	A	A	16824567	3	1	49	1	0	0	0	0	1	0	0	0	12156	622	22	2	1292	2	PLEKHA7	11	16824567	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1567559	16824567	118181949	909	53922											
SERGEF	26297	broad.mit.edu	37	chr11	17834816	17834816	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaagcagccaagtggtgtCtgtgcaaagatgaggtggag	16	5	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17834816	G	G	17834816	1	3	49	0	1	0	0	0	0	0	0	0	14190	928	32	4		4	SERGEF	11	17834816	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1010249	17834816	117171700	910	53923											
SERGEF	26297	broad.mit.edu	37	chr11	17974487	17974487	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtctctatctggctgctCttcctctgctttcctcctca	5	16	6	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17974487	A	A	17974487	1	1	49	0	1	0	0	0	0	0	0	0	14190	928	32	3		3	SERGEF	11	17974487	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	139671	17974487	117032029	911	53924											
SERGEF	26297	broad.mit.edu	37	chr11	17980911	17980911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacctcttctgattcctaCatggtacctatccataacgc	6	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17980911	A	A	17980911	1	1	49	0	1	0	0	0	0	0	0	0	14190	493	17	3		3	SERGEF	11	17980911	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6424	17980911	117025605	912	53925											
HPS5	11234	broad.mit.edu	37	chr11	18312940	18312940	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaattcaaaactgctaaTgttttttaatacgaatttct	3	7	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18312940	C	C	18312940	1	2	49	0	1	0	0	0	0	0	0	0	7409	1479	51	5		5	HPS5	11	18312940	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	332029	18312940	116693576	913	53926											
NAV2	89797	broad.mit.edu	37	chr11	20070731	20070731	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaacagtgtgaagaccacaCtgtcagaaaggttggtgctg	12	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20070731	T	T	20070731	2	4	49	1	0	0	0	0	0	0	0	1	10278	564	20	4		4	NAV2	11	20070731	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1757791	20070731	114935785	914	53927											
SLC6A5	9152	broad.mit.edu	37	chr11	20645014	20645014	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacaacaccctggctggaGccatccccattctttgtcct	8	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20645014	T	T	20645014	1	4	49	0	1	0	0	0	0	0	0	0	14801	986	34	3		3	SLC6A5	11	20645014	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	574283	20645014	114361502	915	53928											
NELL1	4745	broad.mit.edu	37	chr11	20930635	20930635	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcacaaaaggacaactaTtctttaattccacttatatg	4	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20930635	C	C	20930635	1	2	49	0	1	0	0	0	0	0	0	0	10428	1508	52	5		5	NELL1	11	20930635	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	285621	20930635	114075881	916	53929											
NELL1	4745	broad.mit.edu	37	chr11	21380192	21380192	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctggtcttgaactcctgAcctcgggtgatccgcctgcc	12	14	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21380192	T	T	21380192	1	4	49	0	1	0	0	0	0	0	0	0	10428	290	10	5		5	NELL1	11	21380192	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	449557	21380192	113626324	917	53930											
SLC17A6	57084	broad.mit.edu	37	chr11	22381079	22381079	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggacttgttgaggtatgTaacttcagggtgaagccttt	13	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22381079	A	A	22381079	1	1	49	0	1	0	0	0	0	0	0	0	14534	1653	57	5		5	SLC17A6	11	22381079	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1000887	22381079	112625437	918	53931											
LUZP2	338645	broad.mit.edu	37	chr11	24910339	24910339	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgggggatggtttcccccAtgttgttctcatgatggtaa	12	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24910339	T	T	24910339	1	4	49	0	1	0	0	0	0	0	0	0	9174	232	8	5		5	LUZP2	11	24910339	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2529260	24910339	110096177	919	53932											
LUZP2	338645	broad.mit.edu	37	chr11	24993418	24993418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatggccaggtgcagtgGctcatgcttgtaatcccagc	14	11	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24993418	T	T	24993418	1	4	49	0	1	0	0	0	0	0	0	0	9174	1218	42	3		3	LUZP2	11	24993418	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	83079	24993418	110013098	920	53933											
DCDC1	341019	broad.mit.edu	37	chr11	31302432	31302432	+	Intron	SNP	A	T	T													gtcttctgcccgaagagaccAtggagattaggcccagtctt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31302432	T	T	31302432	1	4	49	0	1	0	0	0	0	0	0	0	4317	232	8	5		5	DCDC1	11	31302432	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	6309014	31302432	103704084	921	53934	258	2									
DCDC1	341019	broad.mit.edu	37	chr11	31302434	31302434	+	Intron	SNP	G	C	C													cttctgcccgaagagaccatGgagattaggcccagtcttgt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31302434	C	C	31302434	1	2	49	0	1	0	0	0	0	0	0	0	4317	1363	47	4		4	DCDC1	11	31302434	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2	31302434	103704082	922	53935	258	2									
IMMP1L	196294	broad.mit.edu	37	chr11	31514852	31514852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaacacatccttcttcaCatggtggcgggaaggagaag	12	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31514852	A	A	31514852	1	1	49	0	1	0	0	0	0	0	0	0	7786	493	17	3		3	IMMP1L	11	31514852	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	212418	31514852	103491664	923	53936											
ELP4	26610	broad.mit.edu	37	chr11	31757299	31757299	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagagaataaaatacctAggaatccaacttacaagaga	6	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31757299	G	G	31757299	1	3	49	0	1	0	0	0	0	0	0	0	5124	435	15	5		5	ELP4	11	31757299	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	242447	31757299	103249217	924	53937											
RCN1	5954	broad.mit.edu	37	chr11	31855188	31855188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagaaggagacactgtgGgtttgaggtgaagagggaaa	18	2	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31855188	T	T	31855188	1	4	49	0	1	0	0	0	0	0	0	0	13287	1247	43	2		2	RCN1	11	31855188	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	97889	31855188	103151328	925	53938											
RCN1	5954	broad.mit.edu	37	chr11	31888659	31888659	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catagtttctctggggcaagAgtctggacagagtacagtga	13	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31888659	G	G	31888659	1	3	49	0	1	0	0	0	0	0	0	0	13287	319	11	5		5	RCN1	11	31888659	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	33471	31888659	103117857	926	53939											
WT1	7490	broad.mit.edu	37	chr11	32433122	32433122	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaatttccttctctgcgTagttgtattttctaactgtt	5	7	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32433122	C	C	32433122	1	2	49	0	1	0	0	0	0	0	0	0	17535	1653	57	5		5	WT1	11	32433122	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	544463	32433122	102573394	927	53940											
QSER1	79832	broad.mit.edu	37	chr11	32976924	32976924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaatttgttcctgaaattcGagatggtcaaagagaatttg	10	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32976924	T	T	32976924	3	4	49	1	0	0	0	0	1	0	0	0	12990	1058	37	3	4210	3	QSER1	11	32976924	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	543802	32976924	102029592	928	53941											
CSTF3	1479	broad.mit.edu	37	chr11	33129503	33129503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatgaaagataacacttcCataaatcaatgtgcaaaacc	4	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33129503	A	A	33129503	3	1	49	1	0	0	0	0	1	0	0	0	4020	595	21	2	1919	2	CSTF3	11	33129503	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	152579	33129503	101877013	929	53942											
LRRC4C	57689	broad.mit.edu	37	chr11	40164679	40164679	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttatatcctatcacccatgCattggaaattctgtgtatca	5	9	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40164679	G	G	40164679	1	3	49	0	1	0	0	0	0	0	0	0	9095	725	25	4		4	LRRC4C	11	40164679	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7035176	40164679	94841837	930	53943											
LRRC4C	57689	broad.mit.edu	37	chr11	40174427	40174427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatagcagatgacaaagGgcatattatattgggagttg	11	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40174427	T	T	40174427	1	4	49	0	1	0	0	0	0	0	0	0	9095	1247	43	2		2	LRRC4C	11	40174427	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	9748	40174427	94832089	931	53944											
LRRC4C	57689	broad.mit.edu	37	chr11	40648396	40648396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtaccctgacccagcaCaggggctctctatctcagtg	9	15	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40648396	A	A	40648396	1	1	49	0	1	0	0	0	0	0	0	0	9095	493	17	3		3	LRRC4C	11	40648396	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	473969	40648396	94358120	932	53945											
LRRC4C	57689	broad.mit.edu	37	chr11	41035801	41035801	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggttagtatttcaatgtgtGaatttcggtgggtacacata	11	4	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41035801	T	T	41035801	1	4	49	0	1	0	0	0	0	0	0	0	9095	1305	45	3		3	LRRC4C	11	41035801	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	387405	41035801	93970715	933	53946											
LRRC4C	57689	broad.mit.edu	37	chr11	41453867	41453867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattaaaatacaggtttccGtgggagaggtaacacaatag	10	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41453867	T	T	41453867	1	4	49	0	1	0	0	0	0	0	0	0	9095	1160	40	3		3	LRRC4C	11	41453867	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	418066	41453867	93552649	934	53947											
MTCH2	23788	broad.mit.edu	37	chr11	47657034	47657034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttttctccaaaagaggcCccaaaagcagtaacaacttg	8	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47657034	A	A	47657034	1	1	49	0	1	0	0	0	0	0	0	0	10008	638	22	2		2	MTCH2	11	47657034	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6203167	47657034	87349482	935	53948											
FOLH1	2346	broad.mit.edu	37	chr11	49168533	49168533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctgtttattaggtgccCaaatgatatacaagagaaac	8	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49168533	A	A	49168533	1	1	49	0	1	0	0	0	0	0	0	0	6037	609	21	2		2	FOLH1	11	49168533	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1511499	49168533	85837983	936	53949											
OR4C46	119749	broad.mit.edu	37	chr11	51515365	51515365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaatcatatttgttgtGttttttgtcatctatatcat	5	5	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51515365	T	T	51515365	2	4	49	1	0	0	0	0	0	0	0	1	11145	1364	48	3		3	OR4C46	11	51515365	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2346832	51515365	83491151	937	53950											
TRIM48	79097	broad.mit.edu	37	chr11	55032720	55032720	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggagcctgctctgtttgcTgtgctccagctctcaggagc	12	13	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55032720	A	A	55032720	3	1	49	1	0	0	0	0	1	0	0	0	16648	1580	55	5	395	5	TRIM48	11	55032720	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3517355	55032720	79973796	938	53951											
OR8H1	219469	broad.mit.edu	37	chr11	56058177	56058177	+	Missense_Mutation	SNP	C	A	A													gactgcagatagctacgtagCgatcataggccattgatgag							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56058177	A	A	56058177	3	1	49	1	0	0	0	0	1	0	0	0	11331	768	27	3	575	3	OR8H1	11	56058177	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1025457	56058177	78948339	939	53952	259	2									
OR8H1	219469	broad.mit.edu	37	chr11	56058181	56058181	+	Missense_Mutation	SNP	C	G	G													gcagatagctacgtagcgatCataggccattgatgagagaa							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56058181	G	G	56058181	3	3	49	1	0	0	0	0	1	0	0	0	11331	826	29	4	579	4	OR8H1	11	56058181	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4	56058181	78948335	940	53953	259	2									
OR8J1	219477	broad.mit.edu	37	chr11	56128532	56128532	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaaccattcactggatacTgatgataagatggcttctgt	9	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128532	A	A	56128532	2	1	49	1	0	0	0	0	0	0	0	1	11335	1567	55	5		5	OR8J1	11	56128532	Silent	SNP	T	TCGA-17-Z016-01A-01W-0746-08	70351	56128532	78877984	941	53954											
OR10Q1	219960	broad.mit.edu	37	chr11	57995704	57995704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacgcagatgagcaggaagGggatggtcagcacgaggatg	18	6	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995704	T	T	57995704	3	4	49	1	0	0	0	0	1	0	0	0	11010	1232	43	2	319	2	OR10Q1	11	57995704	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1867172	57995704	77010812	942	53955											
MS4A6A	64231	broad.mit.edu	37	chr11	59940032	59940032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgaattttaagatcaccaGgggcaaatgcagagcataag	10	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59940032	T	T	59940032	1	4	49	0	1	0	0	0	0	0	0	0	9958	1015	35	2		2	MS4A6A	11	59940032	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1944328	59940032	75066484	943	53956											
SNX32	254122	broad.mit.edu	37	chr11	65618421	65618421	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggaaggaagccactggTggggcctggcctggtttgga	19	7	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65618421	A	A	65618421	1	1	49	0	1	0	0	0	0	0	0	0	15016	1711	59	5		5	SNX32	11	65618421	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	5678389	65618421	69388095	944	53957											
EIF1AD	84285	broad.mit.edu	37	chr11	65767113	65767113	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcagccttcaccttttctCcctcttcaatggggtcaaca	5	14	6	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65767113	T	T	65767113	3	4	49	1	0	0	0	0	1	0	0	0	5031	855	30	4	279	4	EIF1AD	11	65767113	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	148692	65767113	69239403	945	53958											
ANO1	55107	broad.mit.edu	37	chr11	70028779	70028779	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctggacctgggctacgagGtgcagatctgcaggtactgc	14	12	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70028779	C	C	70028779	3	2	49	1	0	0	0	0	1	0	0	0	695	1261	44	4	2669	4	ANO1	11	70028779	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4261666	70028779	64977737	946	53959											
SHANK2	22941	broad.mit.edu	37	chr11	70641891	70641891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatggaagaaggaccctaCcaacaggtgctggctttgga	13	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70641891	A	A	70641891	1	1	49	0	1	0	0	0	0	0	0	0	14378	522	18	3		3	SHANK2	11	70641891	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	613112	70641891	64364625	947	53960											
CLPB	81570	broad.mit.edu	37	chr11	72144992	72144992	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctgtaaccagatgatgtCtgagtccctccaagacttag	8	13	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72144992	A	A	72144992	1	1	49	0	1	0	0	0	0	0	0	0	3583	928	32	3		3	CLPB	11	72144992	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1503101	72144992	62861524	948	53961											
INTS4	92105	broad.mit.edu	37	chr11	77655343	77655343	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcctctccaacttacctcGttacagatcccctatattga	3	14	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77655343	A	A	77655343	1	1	49	0	1	0	0	0	0	0	0	0	7850	1160	40	4		4	INTS4	11	77655343	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5510351	77655343	57351173	949	53962											
USP35	57558	broad.mit.edu	37	chr11	77907354	77907354	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcgtgaagcaggggctGgttcggcgcgtgctggaggc	20	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77907354	T	T	77907354	2	4	49	1	0	0	0	0	0	0	0	1	17193	1335	47	2		2	USP35	11	77907354	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	252011	77907354	57099162	950	53963											
DLG2	1740	broad.mit.edu	37	chr11	83390336	83390336	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accattagcacagtgcctggGacatcataaactatatttac	6	10	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83390336	C	C	83390336	1	2	49	0	1	0	0	0	0	0	0	0	4595	1189	41	4		4	DLG2	11	83390336	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5482982	83390336	51616180	951	53964											
DLG2	1740	broad.mit.edu	37	chr11	84250563	84250563	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcctctgtattgcagtcTgtgctttcttctttttctct	7	10	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84250563	G	G	84250563	1	3	49	0	1	0	0	0	0	0	0	0	4595	1595	55	5		5	DLG2	11	84250563	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	860227	84250563	50755953	952	53965											
DLG2	1740	broad.mit.edu	37	chr11	84391212	84391212	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgttcaaaccatagtcaAcctccttcctcctcctcaac	2	18	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84391212	T	T	84391212	1	4	49	0	1	0	0	0	0	0	0	0	4595	58	2	5		5	DLG2	11	84391212	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	140649	84391212	50615304	953	53966											
GRM5	2915	broad.mit.edu	37	chr11	88306496	88306496	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccctaaaaatgatgtgactCctcattcacagctggtactc	6	13	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88306496	T	T	88306496	1	4	49	0	1	0	0	0	0	0	0	0	6866	870	30	4		4	GRM5	11	88306496	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3915284	88306496	46700020	954	53967											
FAT3	120114	broad.mit.edu	37	chr11	92092230	92092230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttaacaaatgcagattcCcaggccaaattcccaattat	5	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92092230	A	A	92092230	1	1	49	0	1	0	0	0	0	0	0	0	5748	638	22	2		2	FAT3	11	92092230	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3785734	92092230	42914286	955	53968											
SLC36A4	120103	broad.mit.edu	37	chr11	92918595	92918595	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcagacatcacttctcttAacattcctgttccacttaat	2	12	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92918595	C	C	92918595	1	2	49	0	1	0	0	0	0	0	0	0	14710	377	13	5		5	SLC36A4	11	92918595	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	826365	92918595	42087921	956	53969											
C11orf75	56935	broad.mit.edu	37	chr11	93235150	93235150	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggctgcacaggaccagacTgcaatgggcaccaccaagaa	12	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93235150	A	A	93235150	1	1	49	0	1	0	0	0	0	0	0	0	1675	1595	55	5		5	C11orf75	11	93235150	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	316555	93235150	41771366	957	53970											
MAML2	84441	broad.mit.edu	37	chr11	95916186	95916186	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggagtgcagtggcatgAtctcagctcactgcaacctc	12	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95916186	G	G	95916186	1	3	49	0	1	0	0	0	0	0	0	0	9298	348	12	5		5	MAML2	11	95916186	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2681036	95916186	39090330	958	53971											
MAML2	84441	broad.mit.edu	37	chr11	95980900	95980900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactctttcattctcctacAtgactacttcacaccttttc	1	14	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95980900	T	T	95980900	1	4	49	0	1	0	0	0	0	0	0	0	9298	232	8	5		5	MAML2	11	95980900	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	64714	95980900	39025616	959	53972											
CNTN5	53942	broad.mit.edu	37	chr11	99667493	99667493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaaggcttggaggatGgacatccctggctgagcttc	13	12	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99667493	T	T	99667493	1	4	49	0	1	0	0	0	0	0	0	0	3676	1363	47	2		2	CNTN5	11	99667493	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3686593	99667493	35339023	960	53973											
CNTN5	53942	broad.mit.edu	37	chr11	99995837	99995837	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatgttgctaagaattgaaGatgttatagaaaataaagtg	10	1	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99995837	T	T	99995837	1	4	49	0	1	0	0	0	0	0	0	0	3676	957	33	3		3	CNTN5	11	99995837	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	328344	99995837	35010679	961	53974											
CNTN5	53942	broad.mit.edu	37	chr11	100061912	100061912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaatgcttccaaatcagaCgagggaaagtacgtttgccg	10	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100061912	A	A	100061912	3	1	49	1	0	0	0	0	1	0	0	0	3676	535	19	3	1681	3	CNTN5	11	100061912	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	66075	100061912	34944604	962	53975											
PGR	5241	broad.mit.edu	37	chr11	100912648	100912648	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattcagagaataatcattGatattctggaatcaaccaaa	5	6	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100912648	T	T	100912648	1	4	49	0	1	0	0	0	0	0	0	0	11900	1305	45	3		3	PGR	11	100912648	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	850736	100912648	34093868	963	53976											
DYNC2H1	79659	broad.mit.edu	37	chr11	103055733	103055734	+	Frame_Shift_Ins	INS	-	T	T													tattaatctcataaggggacINSttggtggaaatctgaatatg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103055734	T	T	103055733	7	5	49	1	0	1	1	0	0	0	0	0	4886	565	20	0	6748	0	DYNC2H1	11	103055733	Frame_Shift_Ins	INS	-	TCGA-17-Z016-01A-01W-0746-08	2143085	103055733	31950783	964	53977											
GRIA4	2893	broad.mit.edu	37	chr11	105725990	105725990	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acactgctttcccaaggtatCgcaatattgaataggtttga	8	8	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105725990	A	A	105725990	1	1	49	0	1	0	0	0	0	0	0	0	6836	899	31	3		3	GRIA4	11	105725990	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2670257	105725990	29280526	965	53978											
CWF19L2	143884	broad.mit.edu	37	chr11	107208207	107208207	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagagctgagtggtccaggaTgtctgcatgcattcacatga	12	8	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107208207	C	C	107208207	1	2	49	0	1	0	0	0	0	0	0	0	4105	1479	51	5		5	CWF19L2	11	107208207	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1482217	107208207	27798309	966	53979											
ATM	472	broad.mit.edu	37	chr11	108143552	108143552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaatcatcaccaagttcGcatgttggctgcagagtcaa	9	10	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108143552	T	T	108143552	3	4	49	1	0	0	0	0	1	0	0	0	1113	1087	38	3	3339	3	ATM	11	108143552	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	935345	108143552	26862964	967	53980											
DLAT	1737	broad.mit.edu	37	chr11	111921968	111921968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttccagatattagaagGgagaagcaaaatttctgtca	9	6	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111921968	T	T	111921968	3	4	49	1	0	0	0	0	1	0	0	0	4589	1232	43	2	1451	2	DLAT	11	111921968	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3778416	111921968	23084548	968	53981											
APOC3	345	broad.mit.edu	37	chr11	116701354	116701354	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctcctggcctctgcccGtaagcacttggtgggactgg	15	13	1	0	rs138326449	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116701354	A	A	116701354	5	1	49	1	0	0	0	0	0	0	1	0	801	1159	40	4	58	4	APOC3	11	116701354	Splice_Site	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4779386	116701354	18305162	969	53982											
DSCAML1	57453	broad.mit.edu	37	chr11	117352588	117352588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaggggctcccaggctccCcatttgcctcctggatgcag	14	14	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117352588	T	T	117352588	1	4	49	0	1	0	0	0	0	0	0	0	4809	638	22	4		4	DSCAML1	11	117352588	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	651234	117352588	17653928	970	53983											
DSCAML1	57453	broad.mit.edu	37	chr11	117550478	117550478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcctacaaacccagcaGgccgatttgtttcaaagagg	10	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117550478	T	T	117550478	1	4	49	0	1	0	0	0	0	0	0	0	4809	1015	35	2		2	DSCAML1	11	117550478	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	197890	117550478	17456038	971	53984											
DSCAML1	57453	broad.mit.edu	37	chr11	117583435	117583435	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaccctgctcaatcacGctcaatcactctgctcacca	4	18	6	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117583435	A	A	117583435	1	1	49	0	1	0	0	0	0	0	0	0	4809	1102	38	4		4	DSCAML1	11	117583435	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	32957	117583435	17423081	972	53985											
FXYD6	53826	broad.mit.edu	37	chr11	117725552	117725552	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcatgagcaaaagcagtgaGaggggaaacagagagtagga	16	4	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117725552	C	C	117725552	1	2	49	0	1	0	0	0	0	0	0	0	6182	957	33	4		4	FXYD6	11	117725552	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	142117	117725552	17280964	973	53986											
GRIK4	2900	broad.mit.edu	37	chr11	120479312	120479312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggaagcagtgaccccCcttctaagttgtgagactca	12	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120479312	A	A	120479312	1	1	49	0	1	0	0	0	0	0	0	0	6842	638	22	2		2	GRIK4	11	120479312	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2753760	120479312	14527204	974	53987											
GRIK4	2900	broad.mit.edu	37	chr11	120488798	120488798	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgacccaaatgcagatagtGatatgaacagagatagccag	11	7	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120488798	A	A	120488798	1	1	49	0	1	0	0	0	0	0	0	0	6842	1305	45	4		4	GRIK4	11	120488798	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	9486	120488798	14517718	975	53988											
GRIK4	2900	broad.mit.edu	37	chr11	120790349	120790349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgagtctcagctgagtGgatggatggcgtgggaaaga	17	5	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120790349	T	T	120790349	1	4	49	0	1	0	0	0	0	0	0	0	6842	1363	47	2		2	GRIK4	11	120790349	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	301551	120790349	14216167	976	53989											
GRAMD1B	57476	broad.mit.edu	37	chr11	123469874	123469874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatctcatttgggtgcttcCggtggaattcctttatttgc	10	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123469874	T	T	123469874	1	4	49	0	1	0	0	0	0	0	0	0	6814	667	23	4		4	GRAMD1B	11	123469874	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2679525	123469874	11536642	977	53990											
ST3GAL4	6484	broad.mit.edu	37	chr11	126284072	126284072	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggggagggagttctggGcctggccaggtctgagatga	18	7	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126284072	T	T	126284072	1	4	49	0	1	0	0	0	0	0	0	0	15335	1218	42	3		3	ST3GAL4	11	126284072	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2814198	126284072	8722444	978	53991											
ETS1	2113	broad.mit.edu	37	chr11	128426690	128426690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaccttactctgtaaaaaCgtcatgaaaggatattctta	7	7	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128426690	A	A	128426690	1	1	49	0	1	0	0	0	0	0	0	0	5317	551	19	3		3	ETS1	11	128426690	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2142618	128426690	6579826	979	53992											
NTM	50863	broad.mit.edu	37	chr11	131308495	131308495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtttgtgcatgtgtcacGtagttctcatgccatggttt	11	7	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131308495	T	T	131308495	1	4	49	0	1	0	0	0	0	0	0	0	10794	1160	40	3		3	NTM	11	131308495	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2881805	131308495	3698021	980	53993											
NTM	50863	broad.mit.edu	37	chr11	131341585	131341585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctgcacagaagcatgccGgtaaattcactctgtccaaa	7	11	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131341585	A	A	131341585	1	1	49	0	1	0	0	0	0	0	0	0	10794	1131	39	4		4	NTM	11	131341585	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	33090	131341585	3664931	981	53994											
NTM	50863	broad.mit.edu	37	chr11	131597476	131597476	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagaaaaaacccatttaaGgtttttgttcaaaggcagac	8	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131597476	A	A	131597476	1	1	49	0	1	0	0	0	0	0	0	0	10794	1015	35	4		4	NTM	11	131597476	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	255891	131597476	3409040	982	53995											
NTM	50863	broad.mit.edu	37	chr11	131689106	131689107	+	Intron	DNP	GG	CT	CT													tagttcaaaacttctctactGgggagaccttgtagttcaaa							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	131689107	CT	CT	131689106	1	2	49	0	1	0	0	0	0	0	0	0	10794	1363	47	4		4	NTM	11	131689106	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	91630	131689106	3317410	983	53996											
NTM	50863	broad.mit.edu	37	chr11	131727880	131727880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctttctctgtctccccCaatttccttcatacccctct	1	21	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131727880	A	A	131727880	1	1	49	0	1	0	0	0	0	0	0	0	10794	609	21	2		2	NTM	11	131727880	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	38774	131727880	3278636	984	53997											
NTM	50863	broad.mit.edu	37	chr11	131795936	131795936	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgagccaggagctgttctAggtgctaagttcctctcttg	11	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131795936	T	T	131795936	1	4	49	0	1	0	0	0	0	0	0	0	10794	435	15	5		5	NTM	11	131795936	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	68056	131795936	3210580	985	53998											
NTM	50863	broad.mit.edu	37	chr11	131863821	131863821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagaattgcttgaaccTggaaggcagaggttgcagtg	16	6	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131863821	A	A	131863821	1	1	49	0	1	0	0	0	0	0	0	0	10794	1595	55	5		5	NTM	11	131863821	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	67885	131863821	3142695	986	53999											
NTM	50863	broad.mit.edu	37	chr11	131866922	131866922	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcactttatgaacatggtCagcttcaccatggcctctcc	6	13	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131866922	A	A	131866922	1	1	49	0	1	0	0	0	0	0	0	0	10794	841	29	3		3	NTM	11	131866922	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3101	131866922	3139594	987	54000											
NTM	50863	broad.mit.edu	37	chr11	131876666	131876666	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcatttgtcctccacaGtatcaggatctcaagcccct	7	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131876666	A	A	131876666	1	1	49	0	1	0	0	0	0	0	0	0	10794	1044	36	4		4	NTM	11	131876666	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	9744	131876666	3129850	988	54001											
NTM	50863	broad.mit.edu	37	chr11	131999530	131999530	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggctctacctcaaagtcAtggaagggaagacttcttag	12	8	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131999530	C	C	131999530	1	2	49	0	1	0	0	0	0	0	0	0	10794	232	8	5		5	NTM	11	131999530	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	122864	131999530	3006986	989	54002											
NTM	50863	broad.mit.edu	37	chr11	132016466	132016466	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcctggaaagccttcaggTaaaggtttgttctctgatcc	10	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132016466	A	A	132016466	1	1	49	0	1	0	0	0	0	0	0	0	10794	1653	57	5		5	NTM	11	132016466	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	16936	132016466	2990050	990	54003											
NTM	50863	broad.mit.edu	37	chr11	132029351	132029351	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttctgtttggaattcTgggaatatcgcctttggatt	10	5	2	0	rs147159566	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132029351	C	C	132029351	1	2	49	0	1	0	0	0	0	0	0	0	10794	1595	55	5		5	NTM	11	132029351	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	12885	132029351	2977165	991	54004											
NTM	50863	broad.mit.edu	37	chr11	132164453	132164453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggaaggaggagttactgGggttgaagaagtctagagga	18	3	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132164453	T	T	132164453	1	4	49	0	1	0	0	0	0	0	0	0	10794	1247	43	2		2	NTM	11	132164453	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	135102	132164453	2842063	992	54005											
OPCML	4978	broad.mit.edu	37	chr11	132410605	132410605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatacatgaatacatgccaGgggctgggtgacatcacaaa	10	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132410605	T	T	132410605	1	4	49	0	1	0	0	0	0	0	0	0	10968	1015	35	2		2	OPCML	11	132410605	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	246152	132410605	2595911	993	54006											
OPCML	4978	broad.mit.edu	37	chr11	132621941	132621941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcgatactacagaacaatGcttctctagagacaggatgt	9	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132621941	T	T	132621941	1	4	49	0	1	0	0	0	0	0	0	0	10968	1334	46	3		3	OPCML	11	132621941	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	211336	132621941	2384575	994	54007											
CACNA2D4	93589	broad.mit.edu	37	chr12	1909441	1909441	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgccctccttccccggggtCtggtagcaagtgggttgtcc	14	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1909441	T	T	1909441	1	4	49	0	1	0	0	0	0	0	0	0	2577	928	32	4		4	CACNA2D4	12	1909441	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08		1909441	131942454	995	54008											
CACNA1C	775	broad.mit.edu	37	chr12	2165425	2165426	+	Intron	DNP	GG	TT	TT													tgagggtcgaactggagactGgaggtcagtgcctgggaaca							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2165426	TT	TT	2165425	1	4	49	0	1	0	0	0	0	0	0	0	2566	1363	47	2		2	CACNA1C	12	2165425	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	255984	2165425	131686470	996	54009											
CACNA1C	775	broad.mit.edu	37	chr12	2662803	2662803	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcactaaaaagagacagcGgcgtgtcccagggtggggct	16	9	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2662803	A	A	2662803	1	1	49	0	1	0	0	0	0	0	0	0	2566	1131	39	4		4	CACNA1C	12	2662803	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	497378	2662803	131189092	997	54010											
CACNA1C	775	broad.mit.edu	37	chr12	2665001	2665001	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaaataacgagaggggcTggcgttttcttgctctgcga	13	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2665001	A	A	2665001	1	1	49	0	1	0	0	0	0	0	0	0	2566	1595	55	5		5	CACNA1C	12	2665001	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2198	2665001	131186894	998	54011											
CACNA1C	775	broad.mit.edu	37	chr12	2665032	2665032	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctctgcgacacagctagcTgtgtgccgcgctgggacgtc	14	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2665032	A	A	2665032	1	1	49	0	1	0	0	0	0	0	0	0	2566	1595	55	5		5	CACNA1C	12	2665032	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	31	2665032	131186863	999	54012											
CACNA1C	775	broad.mit.edu	37	chr12	2724872	2724872	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgcacaggagcctggcgCgggaagcagtgtctgtctca	15	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2724872	T	T	2724872	1	4	49	0	1	0	0	0	0	0	0	0	2566	783	27	4		4	CACNA1C	12	2724872	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	59840	2724872	131127023	1000	54013											
KCNA5	3741	broad.mit.edu	37	chr12	5154211	5154211	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcccgcccctggggccaacGgcagcggggtcatggccccg	16	18	1	0	rs148708451	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5154211	A	A	5154211	3	1	49	1	0	0	0	0	1	0	0	0	8076	1116	39	4	900	4	KCNA5	12	5154211	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2429339	5154211	128697684	1001	54014											
ANO2	57101	broad.mit.edu	37	chr12	5715408	5715408	+	Intron	DEL	G	-	-													ggcagttcatgtgaccctttGgaagatcctgcacttggcct							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5715408	-	-	5715408	6	5	49	0	1	1	0	1	0	0	0	0	697	1363	47	0		0	ANO2	12	5715408	Intron	DEL	G	TCGA-17-Z016-01A-01W-0746-08	561197	5715408	128136487	1002	54015											
ANO2	57101	broad.mit.edu	37	chr12	5721839	5721839	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacgggactccaatctcaaaGatgttgttctggatcaactg	9	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5721839	A	A	5721839	2	1	49	1	0	0	0	0	0	0	0	1	697	932	33	4		4	ANO2	12	5721839	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6431	5721839	128130056	1003	54016											
ANO2	57101	broad.mit.edu	37	chr12	5748390	5748390	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgatccccagcatggcAcacgatagtagctcaagtat	9	12	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5748390	G	G	5748390	1	3	49	0	1	0	0	0	0	0	0	0	697	174	6	5		5	ANO2	12	5748390	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	26551	5748390	128103505	1004	54017											
MFAP5	8076	broad.mit.edu	37	chr12	8807804	8807804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccacttgaacccctgaaCccaggaagtaggggttgcca	11	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8807804	A	A	8807804	1	1	49	0	1	0	0	0	0	0	0	0	9611	522	18	3		3	MFAP5	12	8807804	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3059414	8807804	125044091	1005	54018											
KLRC2	3822	broad.mit.edu	37	chr12	10586496	10586496	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccaatgtaataacaactgTtggaatatgtaatccactcc	5	9	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10586496	C	C	10586496	3	2	49	1	0	0	0	0	1	0	0	0	8487	1725	60	5	330	5	KLRC2	12	10586496	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1778692	10586496	123265399	1006	54019											
GRIN2B	2904	broad.mit.edu	37	chr12	14085219	14085219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctgcacaaatgccacctGctccaatagatcttccatga	5	13	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14085219	T	T	14085219	1	4	49	0	1	0	0	0	0	0	0	0	6846	1334	46	3		3	GRIN2B	12	14085219	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3498723	14085219	119766676	1007	54020											
GRIN2B	2904	broad.mit.edu	37	chr12	14097347	14097347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcccaacagaagcagagCtgtgtgtacgtctacttgag	11	10	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14097347	A	A	14097347	1	1	49	0	1	0	0	0	0	0	0	0	6846	812	28	3		3	GRIN2B	12	14097347	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	12128	14097347	119754548	1008	54021											
RERG	85004	broad.mit.edu	37	chr12	15321305	15321305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattccagctcaaacgtttaCtggttccaggaccttgagga	9	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15321305	A	A	15321305	1	1	49	0	1	0	0	0	0	0	0	0	13340	580	20	3		3	RERG	12	15321305	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1223958	15321305	118530590	1009	54022											
PDE3A	5139	broad.mit.edu	37	chr12	20523096	20523096	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagaggaggaggcggtccaGctccgtcgtgtccgccgaga	16	11	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20523096	C	C	20523096	3	2	49	1	0	0	0	0	1	0	0	0	11731	971	34	4	880	4	PDE3A	12	20523096	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	5201791	20523096	113328799	1010	54023											
SLCO1C1	53919	broad.mit.edu	37	chr12	20894177	20894177	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggattacaatttggattacaAttcaagatgagatttgggaa	10	3	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20894177	G	G	20894177	1	3	49	0	1	0	0	0	0	0	0	0	14839	116	4	5		5	SLCO1C1	12	20894177	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	371081	20894177	112957718	1011	54024											
SLCO1B3	28234	broad.mit.edu	37	chr12	21057585	21057585	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagtgcctcaatgggaacTctgtgtgggaagtccaaccc	13	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21057585	G	G	21057585	1	3	49	0	1	0	0	0	0	0	0	0	14838	1566	54	5		5	SLCO1B3	12	21057585	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	163408	21057585	112794310	1012	54025											
SLCO1B1	10599	broad.mit.edu	37	chr12	21329791	21329791	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgtttaattaatcaaatTttatcactcaatagagcatc	3	7	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21329791	G	G	21329791	3	3	49	1	0	0	0	0	1	0	0	0	14837	1829	64	5	455	5	SLCO1B1	12	21329791	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	272206	21329791	112522104	1013	54026											
SOX5	6660	broad.mit.edu	37	chr12	24179416	24179416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtggtcaggtgtggtgGctcacatctgtaatcctagt	12	7	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24179416	T	T	24179416	1	4	49	0	1	0	0	0	0	0	0	0	15068	1218	42	3		3	SOX5	12	24179416	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2849625	24179416	109672479	1014	54027											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	49	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1218869	25398285	108453610	1015	54028											
PPFIBP1	8496	broad.mit.edu	37	chr12	27746435	27746435	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtcttgacaagcatcAtgttcttgatgactgacctg	11	9	3	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27746435	T	T	27746435	1	4	49	0	1	0	0	0	0	0	0	0	12409	232	8	5		5	PPFIBP1	12	27746435	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2348150	27746435	106105460	1016	54029											
CCDC91	55297	broad.mit.edu	37	chr12	28461285	28461285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatcattatttctcccttGgattactaaagtatattcta	3	7	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28461285	T	T	28461285	1	4	49	0	1	0	0	0	0	0	0	0	2898	1363	47	2		2	CCDC91	12	28461285	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	714850	28461285	105390610	1017	54030											
CCDC91	55297	broad.mit.edu	37	chr12	28473937	28473937	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtttgagggaagaaggaCattgtggttttgaaaggaat	14	2	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28473937	T	T	28473937	1	4	49	0	1	0	0	0	0	0	0	0	2898	493	17	4		4	CCDC91	12	28473937	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	12652	28473937	105377958	1018	54031											
CCDC91	55297	broad.mit.edu	37	chr12	28549321	28549321	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggattatctagagaagtgAcatttgttcagatttgcatt	10	4	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28549321	T	T	28549321	1	4	49	0	1	0	0	0	0	0	0	0	2898	290	10	5		5	CCDC91	12	28549321	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	75384	28549321	105302574	1019	54032											
TSPAN11	441631	broad.mit.edu	37	chr12	31076718	31076718	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtccaagctgaattcccatCtccattttcatagatggtgg	8	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31076718	A	A	31076718	1	1	49	0	1	0	0	0	0	0	0	0	16760	928	32	3		3	TSPAN11	12	31076718	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2527397	31076718	102775177	1020	54033											
CPNE8	144402	broad.mit.edu	37	chr12	39112001	39112001	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagggcataatggccagatGggctaacttaagaagagtct	13	6	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39112001	C	C	39112001	1	2	49	0	1	0	0	0	0	0	0	0	3850	1363	47	4		4	CPNE8	12	39112001	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	8035283	39112001	94739894	1021	54034											
SLC2A13	114134	broad.mit.edu	37	chr12	40289663	40289663	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacacatatgtatatgcgtgTatatgcacacacatatgtat	6	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40289663	A	A	40289663	1	1	49	0	1	0	0	0	0	0	0	0	14656	1653	57	5		5	SLC2A13	12	40289663	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1177662	40289663	93562232	1022	54035											
SLC2A13	114134	broad.mit.edu	37	chr12	40422403	40422403	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtgttgacaacaataaTacttactgtgaagttagcca	8	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40422403	C	C	40422403	1	2	49	0	1	0	0	0	0	0	0	0	14656	1421	49	5		5	SLC2A13	12	40422403	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	132740	40422403	93429492	1023	54036											
CNTN1	1272	broad.mit.edu	37	chr12	41195552	41195552	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattgaagatttaaaatatTaatcgtagtgggaaaacaca	7	3	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41195552	C	C	41195552	1	2	49	0	1	0	0	0	0	0	0	0	3672	1769	61	5		5	CNTN1	12	41195552	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	773149	41195552	92656343	1024	54037											
PDZRN4	29951	broad.mit.edu	37	chr12	41638333	41638333	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccctaccttctacaccTctctcctttgcttactccac	2	19	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41638333	A	A	41638333	1	1	49	0	1	0	0	0	0	0	0	0	11804	1566	54	5		5	PDZRN4	12	41638333	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	442781	41638333	92213562	1025	54038											
TMEM117	84216	broad.mit.edu	37	chr12	44608095	44608095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaccaccacgcccagctaGttttttttgttgttgttttt	7	10	0	0	rs144986199	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44608095	T	T	44608095	1	4	49	0	1	0	0	0	0	0	0	0	16154	1044	36	3		3	TMEM117	12	44608095	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2969762	44608095	89243800	1026	54039											
TMEM117	84216	broad.mit.edu	37	chr12	44645922	44645922	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcgtctctggtgactcTgatcatgctctacccttgcc	8	14	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44645922	A	A	44645922	1	1	49	0	1	0	0	0	0	0	0	0	16154	1595	55	5		5	TMEM117	12	44645922	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	37827	44645922	89205973	1027	54040											
TMEM117	84216	broad.mit.edu	37	chr12	44781918	44781918	+	Frame_Shift_Del	DEL	G	-	-													tatgggcaatatatcggcccGgggcagaagatatatacagt					rs150882895		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44781918	-	-	44781918	7	5	49	1	0	1	0	1	0	0	0	0	16154	1103	39	0	1034	0	TMEM117	12	44781918	Frame_Shift_Del	DEL	G	TCGA-17-Z016-01A-01W-0746-08	135996	44781918	89069977	1028	54041											
NELL2	4753	broad.mit.edu	37	chr12	45013691	45013691	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcttgaatagaaggtctAaagtataacggagaaaatga	10	4	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45013691	G	G	45013691	1	3	49	0	1	0	0	0	0	0	0	0	10429	377	13	5		5	NELL2	12	45013691	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	231773	45013691	88838204	1029	54042											
NELL2	4753	broad.mit.edu	37	chr12	45135755	45135755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagagtagtggttctccCagcacacagtttgagatctt	11	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45135755	A	A	45135755	1	1	49	0	1	0	0	0	0	0	0	0	10429	609	21	2		2	NELL2	12	45135755	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	122064	45135755	88716140	1030	54043											
C12orf41	54934	broad.mit.edu	37	chr12	49054434	49054434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaagggaaataaaacaCaatctatcgaaagcataaaa	7	6	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49054434	A	A	49054434	1	1	49	0	1	0	0	0	0	0	0	0	1700	493	17	3		3	C12orf41	12	49054434	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3918679	49054434	84797461	1031	54044											
FAIM2	23017	broad.mit.edu	37	chr12	50264506	50264506	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacactgactatggcagcccAggtgtccccctcagccccac	9	18	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50264506	G	G	50264506	1	3	49	0	1	0	0	0	0	0	0	0	5422	203	7	5		5	FAIM2	12	50264506	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1210072	50264506	83587389	1032	54045											
FAIM2	23017	broad.mit.edu	37	chr12	50279504	50279504	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccatggacaaatcattccAtttctctggagttcagtttt	6	9	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50279504	G	G	50279504	1	3	49	0	1	0	0	0	0	0	0	0	5422	232	8	5		5	FAIM2	12	50279504	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	14998	50279504	83572391	1033	54046											
METTL7A	25840	broad.mit.edu	37	chr12	51319244	51319244	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggctctgtggatgtggtGgtctgcaccctggtgctgtg	17	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51319244	A	A	51319244	2	1	49	1	0	0	0	0	0	0	0	1	9598	1335	47	4		4	METTL7A	12	51319244	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1039740	51319244	82532651	1034	54047											
BIN2	51411	broad.mit.edu	37	chr12	51693012	51693012	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaagaataggcagctcctCtagtagttcttggttcagat	9	7	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51693012	A	A	51693012	4	1	49	1	0	0	0	0	0	1	0	0	1439	922	32	3	1148	3	BIN2	12	51693012	Nonsense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	373768	51693012	82158883	1035	54048											
ESPL1	9700	broad.mit.edu	37	chr12	53686208	53686208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagacaagaagacgtgtgGggaagggtagacaacataca	14	6	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53686208	T	T	53686208	1	4	49	0	1	0	0	0	0	0	0	0	5295	1247	43	2		2	ESPL1	12	53686208	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1993196	53686208	80165687	1036	54049											
NCKAP1L	3071	broad.mit.edu	37	chr12	54925443	54925443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagggttttcaggaatctGgaggctaggcggggtctgta	17	6	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54925443	A	A	54925443	1	1	49	0	1	0	0	0	0	0	0	0	10317	1363	47	4		4	NCKAP1L	12	54925443	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1239235	54925443	78926452	1037	54050											
OR10P1	121130	broad.mit.edu	37	chr12	56031458	56031458	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagccagcatcacctacatCcggccgcaggcaggctcctc	9	18	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56031458	G	G	56031458	3	3	49	1	0	0	0	0	1	0	0	0	11009	845	30	4	785	4	OR10P1	12	56031458	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1106015	56031458	77820437	1038	54051											
OS9	10956	broad.mit.edu	37	chr12	58111181	58111181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttaggagcgcagtagcGcacacctgtaatcctagtta	10	9	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58111181	T	T	58111181	1	4	49	0	1	0	0	0	0	0	0	0	11366	1102	38	3		3	OS9	12	58111181	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2079723	58111181	75740714	1039	54052											
FAM19A2	338811	broad.mit.edu	37	chr12	62183033	62183033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtattgcctaggtttaCttctagggattttacagttt	9	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62183033	A	A	62183033	1	1	49	0	1	0	0	0	0	0	0	0	5579	580	20	3		3	FAM19A2	12	62183033	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4071852	62183033	71668862	1040	54053											
MON2	23041	broad.mit.edu	37	chr12	62929270	62929270	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacaatgtaattaaaaataAgttaatcagattaaataaaa	3	2	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62929270	T	T	62929270	1	4	49	0	1	0	0	0	0	0	0	0	9794	87	3	5		5	MON2	12	62929270	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	746237	62929270	70922625	1041	54054											
MSRB3	253827	broad.mit.edu	37	chr12	65744246	65744246	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattcacacgtaacaatattAactttaaatgtaaatggact	4	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65744246	T	T	65744246	1	4	49	0	1	0	0	0	0	0	0	0	9983	377	13	5		5	MSRB3	12	65744246	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2814976	65744246	68107649	1042	54055											
BEST3	144453	broad.mit.edu	37	chr12	70065378	70065378	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctaaaatcattgttatatTgttagaataactcagatgta	5	5	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70065378	A	A	70065378	1	1	49	0	1	0	0	0	0	0	0	0	1411	1827	63	5		5	BEST3	12	70065378	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	4321132	70065378	63786517	1043	54056											
BEST3	144453	broad.mit.edu	37	chr12	70078455	70078455	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgacactttttcaggaagAgtgcaacgtgcctggcttgt	12	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70078455	T	T	70078455	1	4	49	0	1	0	0	0	0	0	0	0	1411	319	11	5		5	BEST3	12	70078455	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	13077	70078455	63773440	1044	54057											
PTPRB	5787	broad.mit.edu	37	chr12	70938457	70938457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgattctgaaaagaaaacCgatttatttaaatataaatt	5	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70938457	A	A	70938457	1	1	49	0	1	0	0	0	0	0	0	0	12904	667	23	1		1	PTPRB	12	70938457	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	860002	70938457	62913438	1045	54058											
ZFC3H1	196441	broad.mit.edu	37	chr12	72008545	72008545	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttctctcaccaagaaagctGgtcacccctttcccgatcat	6	15	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72008545	C	C	72008545	1	2	49	0	1	0	0	0	0	0	0	0	17759	1363	47	4		4	ZFC3H1	12	72008545	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1070088	72008545	61843350	1046	54059											
TRHDE	29953	broad.mit.edu	37	chr12	72680485	72680485	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgttactcagttttcGcctacacatgccagaaaggc	9	11	1	1	rs143921572	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72680485	T	T	72680485	2	4	49	1	0	0	0	0	0	0	0	1	16603	1074	38	3		3	TRHDE	12	72680485	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	671940	72680485	61171410	1047	54060											
TRHDE	29953	broad.mit.edu	37	chr12	72954072	72954072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcttgaagtggaaactTgaacctttctctaaactgag	9	9	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72954072	A	A	72954072	1	1	49	0	1	0	0	0	0	0	0	0	16603	1827	63	5		5	TRHDE	12	72954072	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	273587	72954072	60897823	1048	54061											
KCNC2	3747	broad.mit.edu	37	chr12	75601343	75601343	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcggtctcgtcgatgccccAgaaggccagctcctcctcga	11	16	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75601343	T	T	75601343	3	4	49	1	0	0	0	0	1	0	0	0	8085	188	7	5	1577	5	KCNC2	12	75601343	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2647271	75601343	58250552	1049	54062											
NAV3	89795	broad.mit.edu	37	chr12	78513153	78513153	+	Silent	SNP	G	A	A													ccctcaggcattggaagatcGactgccaccagctcctttgg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78513153	A	A	78513153	2	1	49	1	0	0	0	0	0	0	0	1	10279	1045	37	4		4	NAV3	12	78513153	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2911810	78513153	55338742	1050	54063	260	2									
NAV3	89795	broad.mit.edu	37	chr12	78513155	78513155	+	Missense_Mutation	SNP	C	A	A													ctcaggcattggaagatcgaCtgccaccagctcctttggct							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78513155	A	A	78513155	3	1	49	1	0	0	0	0	1	0	0	0	10279	565	20	3	3237	3	NAV3	12	78513155	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2	78513155	55338740	1051	54064	260	2									
SYT1	6857	broad.mit.edu	37	chr12	79508647	79508647	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcagcatttttcacataatCtcaaaaataccaaactggca	3	10	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79508647	A	A	79508647	1	1	49	0	1	0	0	0	0	0	0	0	15584	928	32	3		3	SYT1	12	79508647	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	995492	79508647	54343248	1052	54065											
MYF5	4617	broad.mit.edu	37	chr12	81112299	81112299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcttgctgatagtattGgggaagggagaatggaagtg	16	3	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81112299	T	T	81112299	1	4	49	0	1	0	0	0	0	0	0	0	10121	1363	47	2		2	MYF5	12	81112299	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1603652	81112299	52739596	1053	54066											
PPFIA2	8499	broad.mit.edu	37	chr12	81751068	81751068	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagatattgaatgcctactAtgatggattaattaatacat	6	5	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81751068	G	G	81751068	1	3	49	0	1	0	0	0	0	0	0	0	12406	464	16	5		5	PPFIA2	12	81751068	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	638769	81751068	52100827	1054	54067											
PPFIA2	8499	broad.mit.edu	37	chr12	81768424	81768424	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagtaccttggttagggCtgcaattctctgagccagtt	12	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81768424	T	T	81768424	3	4	49	1	0	0	0	0	1	0	0	0	12406	797	28	4	2606	4	PPFIA2	12	81768424	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	17356	81768424	52083471	1055	54068											
TMTC2	160335	broad.mit.edu	37	chr12	83286349	83286349	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaattacatcattgttaagGctaactacttctggagttta	7	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83286349	C	C	83286349	1	2	49	0	1	0	0	0	0	0	0	0	16384	1218	42	4		4	TMTC2	12	83286349	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1517925	83286349	50565546	1056	54069											
LRRIQ1	84125	broad.mit.edu	37	chr12	85450946	85450946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcttcgatgtggcccttGggatactttacagcaggtat	10	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85450946	T	T	85450946	3	4	49	1	0	0	0	0	1	0	0	0	9116	1357	47	2	2401	2	LRRIQ1	12	85450946	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2164597	85450946	48400949	1057	54070											
LRRIQ1	84125	broad.mit.edu	37	chr12	85596026	85596026	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatgtgccataagcaggtgAaaagaatttatattctgttg	10	4	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85596026	G	G	85596026	1	3	49	0	1	0	0	0	0	0	0	0	9116	261	9	5		5	LRRIQ1	12	85596026	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	145080	85596026	48255869	1058	54071											
MGAT4C	25834	broad.mit.edu	37	chr12	86545735	86545735	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttggtatactaacttatgTgatccagtctgtcttcctgg	9	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86545735	A	A	86545735	1	1	49	0	1	0	0	0	0	0	0	0	9640	1711	59	5		5	MGAT4C	12	86545735	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	949709	86545735	47306160	1059	54072											
CEP290	80184	broad.mit.edu	37	chr12	88478385	88478385	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctggctttttctagaagaCgttgatacttctttaatact	6	8	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88478385	G	G	88478385	3	3	49	1	0	0	0	0	1	0	0	0	3283	536	19	4	2837	4	CEP290	12	88478385	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1932650	88478385	45373510	1060	54073											
FGD6	55785	broad.mit.edu	37	chr12	95475118	95475118	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttaataaataacataaaTgaaaaaacaaacacctttta	1	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95475118	A	A	95475118	1	1	49	0	1	0	0	0	0	0	0	0	5894	1479	51	5		5	FGD6	12	95475118	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	6996733	95475118	38376777	1061	54074											
FGD6	55785	broad.mit.edu	37	chr12	95566222	95566222	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtaacatgagaatatttTaggtgccacattatagcagg	10	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95566222	C	C	95566222	1	2	49	0	1	0	0	0	0	0	0	0	5894	1769	61	5		5	FGD6	12	95566222	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	91104	95566222	38285673	1062	54075											
ANKS1B	56899	broad.mit.edu	37	chr12	99308362	99308362	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccctacctttatttctcaGacccccattcccaccactat	1	18	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99308362	A	A	99308362	1	1	49	0	1	0	0	0	0	0	0	0	689	957	33	4		4	ANKS1B	12	99308362	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3742140	99308362	34543533	1063	54076											
ANKS1B	56899	broad.mit.edu	37	chr12	99834690	99834690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgagataaaagttctgcCgttacctcacctactcaata	6	10	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99834690	A	A	99834690	1	1	49	0	1	0	0	0	0	0	0	0	689	667	23	1		1	ANKS1B	12	99834690	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	526328	99834690	34017205	1064	54077											
ANKS1B	56899	broad.mit.edu	37	chr12	100060779	100060779	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatctccagaatttattcaTcttataactgaaaatttgta	4	6	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100060779	A	A	100060779	1	1	49	0	1	0	0	0	0	0	0	0	689	1450	50	5		5	ANKS1B	12	100060779	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	226089	100060779	33791116	1065	54078											
SLC17A8	246213	broad.mit.edu	37	chr12	100811776	100811776	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgaaattctgttcttgaCtctgattttgaggttttggc	9	5	3	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100811776	T	T	100811776	1	4	49	0	1	0	0	0	0	0	0	0	14536	580	20	4		4	SLC17A8	12	100811776	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	750997	100811776	33040119	1066	54079											
GAS2L3	283431	broad.mit.edu	37	chr12	100975630	100975630	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcttaatttttaaaaaTtgtcatttaattcttaaatt	2	3	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100975630	C	C	100975630	1	2	49	0	1	0	0	0	0	0	0	0	6310	1508	52	5		5	GAS2L3	12	100975630	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	163854	100975630	32876265	1067	54080											
ANO4	121601	broad.mit.edu	37	chr12	101259707	101259707	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggggagacacagccagctGtggatgatttcataggaaag	15	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101259707	C	C	101259707	1	2	49	0	1	0	0	0	0	0	0	0	699	1392	48	4		4	ANO4	12	101259707	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	284077	101259707	32592188	1068	54081											
ANO4	121601	broad.mit.edu	37	chr12	101400946	101400946	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgagagcagcctggccaaCgtggcgaaaccctgtctcta	11	13	1	1	rs145377217	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101400946	T	T	101400946	1	4	49	0	1	0	0	0	0	0	0	0	699	551	19	4		4	ANO4	12	101400946	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	141239	101400946	32450949	1069	54082											
ANO4	121601	broad.mit.edu	37	chr12	101470960	101470960	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accctgggcactgagtttctAacgagcttgcctgtcaaaca	9	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101470960	T	T	101470960	1	4	49	0	1	0	0	0	0	0	0	0	699	377	13	5		5	ANO4	12	101470960	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	70014	101470960	32380935	1070	54083											
ANO4	121601	broad.mit.edu	37	chr12	101504153	101504153	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaatggaaaaccaatactcTctgctctttttccttttttc	4	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101504153	A	A	101504153	1	1	49	0	1	0	0	0	0	0	0	0	699	1566	54	5		5	ANO4	12	101504153	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	33193	101504153	32347742	1071	54084											
STAB2	55576	broad.mit.edu	37	chr12	104086627	104086627	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctccattgtcgatggggAcaacgcagccacaaatggag	13	11	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104086627	G	G	104086627	3	3	49	1	0	0	0	0	1	0	0	0	15356	275	10	5	3457	5	STAB2	12	104086627	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2582474	104086627	29765268	1072	54085											
RFX4	5992	broad.mit.edu	37	chr12	107072296	107072296	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataacaacactataacactcTggtagattttaggtgcttct	6	8	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107072296	C	C	107072296	1	2	49	0	1	0	0	0	0	0	0	0	13373	1595	55	5		5	RFX4	12	107072296	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2985669	107072296	26779599	1073	54086											
RIC8B	55188	broad.mit.edu	37	chr12	107224946	107224946	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtcttaaagcactcaaccCtagatctgtcagcccacctt	5	15	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107224946	G	G	107224946	1	3	49	0	1	0	0	0	0	0	0	0	13465	696	24	4		4	RIC8B	12	107224946	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	152650	107224946	26626949	1074	54087											
BTBD11	121551	broad.mit.edu	37	chr12	107889142	107889142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgaggcaggcagcagtgGggcttgggccagattgtccc	16	10	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107889142	T	T	107889142	1	4	49	0	1	0	0	0	0	0	0	0	1548	1247	43	2		2	BTBD11	12	107889142	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	664196	107889142	25962753	1075	54088											
BTBD11	121551	broad.mit.edu	37	chr12	108042480	108042480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaataaggagcaggtggcCctgtggcatcccagagtcac	13	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108042480	A	A	108042480	1	1	49	0	1	0	0	0	0	0	0	0	1548	638	22	2		2	BTBD11	12	108042480	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	153338	108042480	25809415	1076	54089											
SVOP	55530	broad.mit.edu	37	chr12	109316781	109316781	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtttcctcataaaactgGggcaaataaaagcaccatgt	8	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109316781	A	A	109316781	1	1	49	0	1	0	0	0	0	0	0	0	15541	1247	43	4		4	SVOP	12	109316781	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1274301	109316781	24535114	1077	54090											
C12orf76	400073	broad.mit.edu	37	chr12	110503494	110503494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaccgtcattctggtcCcaccacactctatgctctgc	5	19	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110503494	A	A	110503494	1	1	49	0	1	0	0	0	0	0	0	0	1728	638	22	2		2	C12orf76	12	110503494	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1186713	110503494	23348401	1078	54091											
CUX2	23316	broad.mit.edu	37	chr12	111481888	111481888	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaaacaaccttcctcctgtCcttctgtcctctctccttca	2	19	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111481888	T	T	111481888	1	4	49	0	1	0	0	0	0	0	0	0	4098	870	30	4		4	CUX2	12	111481888	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	978394	111481888	22370007	1079	54092											
RPH3A	22895	broad.mit.edu	37	chr12	113213545	113213545	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaatcatagatgcaaatGgtctaaactcaccagctaaa	6	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113213545	A	A	113213545	1	1	49	0	1	0	0	0	0	0	0	0	13662	1363	47	4		4	RPH3A	12	113213545	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1731657	113213545	20638350	1080	54093											
RPH3A	22895	broad.mit.edu	37	chr12	113319700	113319700	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgggtgcatgggccctggCagatacccagggttctcagc	14	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113319700	T	T	113319700	1	4	49	0	1	0	0	0	0	0	0	0	13662	725	25	4		4	RPH3A	12	113319700	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	106155	113319700	20532195	1081	54094											
MED13L	23389	broad.mit.edu	37	chr12	116431765	116431765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagtccagggtgatggCgagcagagaccacagcagga	18	8	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116431765	A	A	116431765	1	1	49	0	1	0	0	0	0	0	0	0	9524	783	27	3		3	MED13L	12	116431765	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3112065	116431765	17420130	1082	54095											
FBXO21	23014	broad.mit.edu	37	chr12	117593558	117593558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgcgctgaaaacacgcCcgcggggccactggcacaag	13	14	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117593558	A	A	117593558	1	1	49	0	1	0	0	0	0	0	0	0	5790	638	22	2		2	FBXO21	12	117593558	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1161793	117593558	16258337	1083	54096											
DNAH10	196385	broad.mit.edu	37	chr12	124263353	124263353	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagtgcagtggcacaatcaCatctcactgcagcctcaaac	7	13	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124263353	G	G	124263353	1	3	49	0	1	0	0	0	0	0	0	0	4638	493	17	4		4	DNAH10	12	124263353	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6669795	124263353	9588542	1084	54097											
DNAH10	196385	broad.mit.edu	37	chr12	124265637	124265637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatttcaggtttttttgcCagcattgtccttcaatcagc	8	10	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124265637	T	T	124265637	3	4	49	1	0	0	0	0	1	0	0	0	4638	594	21	4	471	4	DNAH10	12	124265637	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2284	124265637	9586258	1085	54098											
TMEM132B	114795	broad.mit.edu	37	chr12	126135489	126135489	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcgggagccgggaataaCcacggtgcaggtacacgccg	16	11	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126135489	T	T	126135489	3	4	49	1	0	0	0	0	1	0	0	0	16169	507	18	4	1915	4	TMEM132B	12	126135489	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1869852	126135489	7716406	1086	54099											
TMEM132D	121256	broad.mit.edu	37	chr12	130121533	130121533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactctcatttctacctccCccaatataaacacagtacaa	1	14	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130121533	A	A	130121533	1	1	49	0	1	0	0	0	0	0	0	0	16170	638	22	2		2	TMEM132D	12	130121533	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3986044	130121533	3730362	1087	54100											
SGCG	6445	broad.mit.edu	37	chr13	23752433	23752433	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaagcagagcaggaggttcTgcagagggaatccactgaag	15	8	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23752433	A	A	23752433	1	1	49	0	1	0	0	0	0	0	0	0	14316	1595	55	5		5	SGCG	13	23752433	5'Flank	SNP	T	TCGA-17-Z016-01A-01W-0746-08		23752433	91417445	1088	54101											
RNF17	56163	broad.mit.edu	37	chr13	25338460	25338460	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggtgtggaaggagggtatCcagatcatccggtgaggagc	17	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25338460	T	T	25338460	3	4	49	1	0	0	0	0	1	0	0	0	13572	855	30	4	121	4	RNF17	13	25338460	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1586027	25338460	89831418	1089	54102											
RNF17	56163	broad.mit.edu	37	chr13	25439108	25439108	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atactataaatactgtacttCtgaacatactgaggagatgt	7	6	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25439108	A	A	25439108	3	1	49	1	0	0	0	0	1	0	0	0	13572	913	32	3	4187	3	RNF17	13	25439108	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	100648	25439108	89730770	1090	54103											
PDX1	3651	broad.mit.edu	37	chr13	28495446	28495446	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaatttttcaggagatgggCgctccctgcctagctggtgg	14	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28495446	G	G	28495446	1	3	49	0	1	0	0	0	0	0	0	0	11789	783	27	4		4	PDX1	13	28495446	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3056338	28495446	86674432	1091	54104											
MTUS2	23281	broad.mit.edu	37	chr13	29682829	29682829	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagcatggctatgattgaaGaccacacagcatttggtggg	12	7	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29682829	C	C	29682829	1	2	49	0	1	0	0	0	0	0	0	0	10060	957	33	4		4	MTUS2	13	29682829	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1187383	29682829	85487049	1092	54105											
POSTN	10631	broad.mit.edu	37	chr13	38144929	38144929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatttaagattcaatcatAaacatttttagaacatatcc	2	8	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38144929	G	G	38144929	1	3	49	0	1	0	0	0	0	0	0	0	12354	377	13	5		5	POSTN	13	38144929	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	8462100	38144929	77024949	1093	54106											
KIAA0564	23078	broad.mit.edu	37	chr13	42266941	42266941	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcatgcatgcatctttctGgttagaaagctatagaaatc	10	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42266941	C	C	42266941	1	2	49	0	1	0	0	0	0	0	0	0	8255	1363	47	4		4	KIAA0564	13	42266941	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4122012	42266941	72902937	1094	54107											
RB1	5925	broad.mit.edu	37	chr13	48892151	48892151	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccactgaactcctgtcgtCagacagggagccggggctgg	15	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48892151	T	T	48892151	1	4	49	0	1	0	0	0	0	0	0	0	13206	841	29	4		4	RB1	13	48892151	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6625210	48892151	66277727	1095	54108											
PCDH9	5101	broad.mit.edu	37	chr13	67083038	67083038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacacagtccccacctcCttcatatataaattggtgaa	5	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67083038	A	A	67083038	1	1	49	0	1	0	0	0	0	0	0	0	11612	696	24	2		2	PCDH9	13	67083038	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	18190887	67083038	48086840	1096	54109											
TBC1D4	9882	broad.mit.edu	37	chr13	75947825	75947825	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggaatgaaaaattaatccTatgacatcttgcagcaagac	9	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75947825	C	C	75947825	1	2	49	0	1	0	0	0	0	0	0	0	15744	1537	53	5		5	TBC1D4	13	75947825	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	8864787	75947825	39222053	1097	54110											
LMO7	4008	broad.mit.edu	37	chr13	76399988	76399988	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttataactctaggtgttcagAggacagcaaaatcaagagta	9	6	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76399988	T	T	76399988	1	4	49	0	1	0	0	0	0	0	0	0	8929	319	11	5		5	LMO7	13	76399988	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	452163	76399988	38769890	1098	54111											
LMO7	4008	broad.mit.edu	37	chr13	76412212	76412212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggtatatcaagtatcGtttaatttaccaatggtgag	10	4	1	1	rs144453163	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76412212	A	A	76412212	1	1	49	0	1	0	0	0	0	0	0	0	8929	1160	40	4		4	LMO7	13	76412212	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	12224	76412212	38757666	1099	54112											
SLITRK1	114798	broad.mit.edu	37	chr13	84454840	84454840	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgccgggagactagaaTccactcggtttttcaaagga	14	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84454840	A	A	84454840	3	1	49	1	0	0	0	0	1	0	0	0	14856	1435	50	5	1291	5	SLITRK1	13	84454840	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	8042628	84454840	30715038	1100	54113											
GPC5	2262	broad.mit.edu	37	chr13	92444512	92444512	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtcatttcttgataaccaGaatcaaccaacacatctagt	4	11	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92444512	C	C	92444512	1	2	49	0	1	0	0	0	0	0	0	0	6666	957	33	4		4	GPC5	13	92444512	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	7989672	92444512	22725366	1101	54114											
UGGT2	55757	broad.mit.edu	37	chr13	96635759	96635759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaagcttttaagcaaaacTaattacaagaaacagaataa	4	7	0	2	rs143489275	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96635759	A	A	96635759	1	1	49	0	1	0	0	0	0	0	0	0	17068	1537	53	5		5	UGGT2	13	96635759	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	4191247	96635759	18534119	1102	54115											
CLYBL	171425	broad.mit.edu	37	chr13	100537371	100537371	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtcaaaggtacgtgaggcCtggcgcctccccacaggggc	15	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100537371	G	G	100537371	1	3	49	0	1	0	0	0	0	0	0	0	3605	696	24	4		4	CLYBL	13	100537371	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3901612	100537371	14632507	1103	54116											
NALCN	259232	broad.mit.edu	37	chr13	101930561	101930561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcattccaataaactctGttttctcattaacatacaat	2	9	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101930561	T	T	101930561	1	4	49	0	1	0	0	0	0	0	0	0	10242	1392	48	3		3	NALCN	13	101930561	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1393190	101930561	13239317	1104	54117											
NALCN	259232	broad.mit.edu	37	chr13	102029559	102029559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatccactttcttttgaGtatattttgaagctatagct	5	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102029559	T	T	102029559	1	4	49	0	1	0	0	0	0	0	0	0	10242	1044	36	3		3	NALCN	13	102029559	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	98998	102029559	13140319	1105	54118											
FAM155A	728215	broad.mit.edu	37	chr13	108468378	108468378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcaggctttcttacggaCagagaaaaatgttccaaaag	8	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108468378	A	A	108468378	1	1	49	0	1	0	0	0	0	0	0	0	5511	493	17	3		3	FAM155A	13	108468378	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6438819	108468378	6701500	1106	54119											
OSGEP	55644	broad.mit.edu	37	chr14	20922834	20922834	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttcaaaacccagcacCgccggcatggcggaggctgg	13	15	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20922834	T	T	20922834	2	4	49	1	0	0	0	0	0	0	0	1	11381	639	23	4		4	OSGEP	14	20922834	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08		20922834	86426706	1107	54120											
HNRNPC	3183	broad.mit.edu	37	chr14	21725155	21725155	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggtgagaagagtaaaagtCaaggatggctagccaaaatc	12	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21725155	A	A	21725155	1	1	49	0	1	0	0	0	0	0	0	0	7329	841	29	3		3	HNRNPC	14	21725155	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	802321	21725155	85624385	1108	54121											
MYH6	4624	broad.mit.edu	37	chr14	23854034	23854034	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatccacagaactgcagAgttggcttggtgttacagca	10	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23854034	T	T	23854034	1	4	49	0	1	0	0	0	0	0	0	0	10132	319	11	5		5	MYH6	14	23854034	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2128879	23854034	83495506	1109	54122											
MYH7	4625	broad.mit.edu	37	chr14	23883426	23883426	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caattctactttctgatcctCactaaacacttgaattctcc	2	13	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23883426	T	T	23883426	1	4	49	0	1	0	0	0	0	0	0	0	10133	841	29	4		4	MYH7	14	23883426	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	29392	23883426	83466114	1110	54123											
MYH7	4625	broad.mit.edu	37	chr14	23902509	23902509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagagggttaggagttgGtgagtgacagggcaatagtg	17	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23902509	T	T	23902509	1	4	49	0	1	0	0	0	0	0	0	0	10133	1276	44	3		3	MYH7	14	23902509	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	19083	23902509	83447031	1111	54124											
G2E3	55632	broad.mit.edu	37	chr14	31048311	31048311	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtttgagaatgtataaaCatcaaaagcgccatcgtata	7	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31048311	T	T	31048311	1	4	49	0	1	0	0	0	0	0	0	0	6200	493	17	4		4	G2E3	14	31048311	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7145802	31048311	76301229	1112	54125											
AKAP6	9472	broad.mit.edu	37	chr14	33147384	33147384	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtaatatgcccaactgAtcccattaaatccaactcga	4	12	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33147384	G	G	33147384	1	3	49	0	1	0	0	0	0	0	0	0	455	348	12	5		5	AKAP6	14	33147384	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2099073	33147384	74202156	1113	54126											
NPAS3	64067	broad.mit.edu	37	chr14	33480887	33480887	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcatttcctgcttgtttttCcattgtctttagtctttatg	5	8	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33480887	A	A	33480887	1	1	49	0	1	0	0	0	0	0	0	0	10659	870	30	3		3	NPAS3	14	33480887	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	333503	33480887	73868653	1114	54127											
NPAS3	64067	broad.mit.edu	37	chr14	33644124	33644124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacatatggaatatcatGgtcataaccattcaccagac	7	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33644124	T	T	33644124	1	4	49	0	1	0	0	0	0	0	0	0	10659	1363	47	2		2	NPAS3	14	33644124	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	163237	33644124	73705416	1115	54128											
NPAS3	64067	broad.mit.edu	37	chr14	34119018	34119018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgatgaatacagcactgGggatgacaacagaaataatg	10	5	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34119018	T	T	34119018	1	4	49	0	1	0	0	0	0	0	0	0	10659	1247	43	2		2	NPAS3	14	34119018	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	474894	34119018	73230522	1116	54129											
NPAS3	64067	broad.mit.edu	37	chr14	34138644	34138644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatcccctcagtattaagGcattctctaggttcttcttt	5	10	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34138644	T	T	34138644	1	4	49	0	1	0	0	0	0	0	0	0	10659	1218	42	3		3	NPAS3	14	34138644	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	19626	34138644	73210896	1117	54130											
NPAS3	64067	broad.mit.edu	37	chr14	34233418	34233418	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacagcagcagaatgcTctctaggactaccatcttcg	7	13	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34233418	C	C	34233418	1	2	49	0	1	0	0	0	0	0	0	0	10659	1566	54	5		5	NPAS3	14	34233418	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	94774	34233418	73116122	1118	54131											
SLC25A21	89874	broad.mit.edu	37	chr14	37310569	37310569	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatgtatctcttctatccGttctttagagttcttcctca	4	11	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37310569	A	A	37310569	1	1	49	0	1	0	0	0	0	0	0	0	14598	1160	40	4		4	SLC25A21	14	37310569	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3077151	37310569	70038971	1119	54132											
CTAGE5	4253	broad.mit.edu	37	chr14	39784961	39784961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtctcttttgtcaaattGtatgtttttttcagaagata	6	4	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39784961	T	T	39784961	1	4	49	0	1	0	0	0	0	0	0	0	4028	1392	48	3		3	CTAGE5	14	39784961	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2474392	39784961	67564579	1120	54133											
LRFN5	145581	broad.mit.edu	37	chr14	42190669	42190669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgttgccttataggctctGtggactatgtacttaagtgt	11	7	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42190669	T	T	42190669	1	4	49	0	1	0	0	0	0	0	0	0	9028	1392	48	3		3	LRFN5	14	42190669	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2405708	42190669	65158871	1121	54134											
LRFN5	145581	broad.mit.edu	37	chr14	42206213	42206213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcattttctgaggccagCatcatcctgataccaaaacc	5	13	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42206213	A	A	42206213	1	1	49	0	1	0	0	0	0	0	0	0	9028	725	25	3		3	LRFN5	14	42206213	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	15544	42206213	65143327	1122	54135											
LRFN5	145581	broad.mit.edu	37	chr14	42368154	42368154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttgaccagattgtccaGgaaacacaggtgagattctt	10	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42368154	T	T	42368154	3	4	49	1	0	0	0	0	1	0	0	0	9028	991	35	2	2143	2	LRFN5	14	42368154	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	161941	42368154	64981386	1123	54136											
C14orf28	122525	broad.mit.edu	37	chr14	45369750	45369750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttttactatcaaagctGgccgcaaagcagtatcctgt	9	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45369750	T	T	45369750	3	4	49	1	0	0	0	0	1	0	0	0	1783	1348	47	2	114	2	C14orf28	14	45369750	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3001596	45369750	61979790	1124	54137											
KLHL28	54813	broad.mit.edu	37	chr14	45400639	45400639	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccattatgtccacccacCacaaaaataaagcctagcat	3	14	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45400639	A	A	45400639	2	1	49	1	0	0	0	0	0	0	0	1	8453	581	21	2		2	KLHL28	14	45400639	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	30889	45400639	61948901	1125	54138											
MDGA2	161357	broad.mit.edu	37	chr14	47573317	47573317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttatgtcattagagcaCggtgagcaaagaaaactgcc	9	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47573317	A	A	47573317	1	1	49	0	1	0	0	0	0	0	0	0	9500	551	19	3		3	MDGA2	14	47573317	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2172678	47573317	59776223	1126	54139											
MDGA2	161357	broad.mit.edu	37	chr14	47955236	47955236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcagctgtgagaagagtGccactgtcctccagacccca	11	13	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47955236	T	T	47955236	1	4	49	0	1	0	0	0	0	0	0	0	9500	1334	46	3		3	MDGA2	14	47955236	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	381919	47955236	59394304	1127	54140											
DAAM1	23002	broad.mit.edu	37	chr14	59682263	59682263	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcggcagccgctgcaggCttgttaaaggcctgcaccag	14	13	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59682263	T	T	59682263	1	4	49	0	1	0	0	0	0	0	0	0	4248	812	28	4		4	DAAM1	14	59682263	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	11727027	59682263	47667277	1128	54141											
SLC38A6	145389	broad.mit.edu	37	chr14	61451575	61451575	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggagtctcttgagtttgtAtctacatatagaactggatg	10	5	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61451575	G	G	61451575	1	3	49	0	1	0	0	0	0	0	0	0	14722	464	16	5		5	SLC38A6	14	61451575	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1769312	61451575	45897965	1129	54142											
SMOC1	64093	broad.mit.edu	37	chr14	70484219	70484219	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggaagccgcatctgatccCtcctttatcctctcagactc	6	15	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70484219	G	G	70484219	1	3	49	0	1	0	0	0	0	0	0	0	14915	696	24	4		4	SMOC1	14	70484219	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	9032644	70484219	36865321	1130	54143											
SIPA1L1	26037	broad.mit.edu	37	chr14	71958800	71958800	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggccgagatgcctgtccttGacaacaaggtctttgtttgg	12	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71958800	T	T	71958800	1	4	49	0	1	0	0	0	0	0	0	0	14442	1305	45	3		3	SIPA1L1	14	71958800	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1474581	71958800	35390740	1131	54144											
RGS6	9628	broad.mit.edu	37	chr14	72600538	72600538	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cactcatctcttcaagcaggGacacgcatctacgtgattgg	9	12	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72600538	T	T	72600538	1	4	49	0	1	0	0	0	0	0	0	0	13418	1189	41	3		3	RGS6	14	72600538	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	641738	72600538	34749002	1132	54145											
RGS6	9628	broad.mit.edu	37	chr14	72701827	72701827	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaacttggggacagcagGtctttgccatattcttggca	11	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72701827	A	A	72701827	1	1	49	0	1	0	0	0	0	0	0	0	13418	1276	44	4		4	RGS6	14	72701827	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	101289	72701827	34647713	1133	54146											
RGS6	9628	broad.mit.edu	37	chr14	72932145	72932145	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atagaggtcaggggtcatgaGgtccacttagaaaacatatt	11	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72932145	C	C	72932145	1	2	49	0	1	0	0	0	0	0	0	0	13418	1015	35	4		4	RGS6	14	72932145	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	230318	72932145	34417395	1134	54147											
DPF3	8110	broad.mit.edu	37	chr14	73274948	73274948	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaccgaggtgaaatgtagGaccatctgatggatggtcac	13	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73274948	T	T	73274948	1	4	49	0	1	0	0	0	0	0	0	0	4758	1189	41	3		3	DPF3	14	73274948	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	342803	73274948	34074592	1135	54148											
C14orf43	91748	broad.mit.edu	37	chr14	74216006	74216006	+	Intron	DEL	C	-	-													aaaattttgggaggccaaggCcaggaggatcacttgagccc					rs11328827		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74216006	-	-	74216006	6	5	49	0	1	1	0	1	0	0	0	0	1787	754	26	0		0	C14orf43	14	74216006	Intron	DEL	C	TCGA-17-Z016-01A-01W-0746-08	941058	74216006	33133534	1136	54149											
FLVCR2	55640	broad.mit.edu	37	chr14	76052686	76052686	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattacaaagtacattgatcAgttagggtggggcagaaaca	12	5	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76052686	T	T	76052686	1	4	49	0	1	0	0	0	0	0	0	0	6004	203	7	5		5	FLVCR2	14	76052686	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1836680	76052686	31296854	1137	54150											
NRXN3	9369	broad.mit.edu	37	chr14	79432671	79432671	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacctcttcttccagttcaAgaccacctcaccagatggct	6	16	4	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79432671	G	G	79432671	3	3	49	1	0	0	0	0	1	0	0	0	10762	72	3	5	1606	5	NRXN3	14	79432671	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3379985	79432671	27916869	1138	54151											
NRXN3	9369	broad.mit.edu	37	chr14	79482857	79482857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgtgctagatgcaagGgatagcacggtggtaacgat	14	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79482857	T	T	79482857	1	4	49	0	1	0	0	0	0	0	0	0	10762	1247	43	2		2	NRXN3	14	79482857	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	50186	79482857	27866683	1139	54152											
NRXN3	9369	broad.mit.edu	37	chr14	79941034	79941034	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attctctttagtataagcttCcaaagggctctagactcagc	7	10	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79941034	A	A	79941034	1	1	49	0	1	0	0	0	0	0	0	0	10762	870	30	3		3	NRXN3	14	79941034	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	458177	79941034	27408506	1140	54153											
TSHR	7253	broad.mit.edu	37	chr14	81441168	81441168	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagcagcaaaataaagagGaaaaatatctggtataaagc	8	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81441168	T	T	81441168	1	4	49	0	1	0	0	0	0	0	0	0	16747	1189	41	3		3	TSHR	14	81441168	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1500134	81441168	25908372	1141	54154											
TSHR	7253	broad.mit.edu	37	chr14	81462881	81462881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acactggtttcatctcagtgTacagggagtctagttactaa	9	8	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81462881	C	C	81462881	1	2	49	0	1	0	0	0	0	0	0	0	16747	1653	57	5		5	TSHR	14	81462881	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	21713	81462881	25886659	1142	54155											
STON2	85439	broad.mit.edu	37	chr14	81850484	81850484	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagtcactccctggccttaTggaaaatttcacatccccct	5	15	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81850484	A	A	81850484	1	1	49	0	1	0	0	0	0	0	0	0	15436	1479	51	5		5	STON2	14	81850484	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	387603	81850484	25499056	1143	54156											
FLRT2	23768	broad.mit.edu	37	chr14	86088719	86088719	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggatatatccaacaaccaActgcggatgctgactcaagg	9	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86088719	G	G	86088719	2	3	49	1	0	0	0	0	0	0	0	1	5997	40	2	5		5	FLRT2	14	86088719	Silent	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4238235	86088719	21260821	1144	54157											
GALC	2581	broad.mit.edu	37	chr14	88319910	88319910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagaaaaatcataccaccCagcttgtactatgacaagtg	7	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88319910	A	A	88319910	1	1	49	0	1	0	0	0	0	0	0	0	6263	609	21	2		2	GALC	14	88319910	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2231191	88319910	19029630	1145	54158											
GPR65	8477	broad.mit.edu	37	chr14	88473704	88473704	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctctcttttcgatctttaTggaattccaattatgtatat	4	7	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88473704	A	A	88473704	1	1	49	0	1	0	0	0	0	0	0	0	6771	1479	51	5		5	GPR65	14	88473704	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	153794	88473704	18875836	1146	54159											
PTPN21	11099	broad.mit.edu	37	chr14	88998588	88998588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatagagaaagagggaatcCtccctaaatcattctatgaa	8	7	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88998588	T	T	88998588	1	4	49	0	1	0	0	0	0	0	0	0	12894	696	24	4		4	PTPN21	14	88998588	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	524884	88998588	18350952	1147	54160											
FOXN3	1112	broad.mit.edu	37	chr14	90031150	90031150	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatatgacaatgtcctcataAaaaaagaagatggcagtggc	9	6	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90031150	T	T	90031150	1	4	49	0	1	0	0	0	0	0	0	0	6081	29	1	5		5	FOXN3	14	90031150	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1032562	90031150	17318390	1148	54161											
RPS6KA5	9252	broad.mit.edu	37	chr14	91467469	91467469	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggagctcaaaattttcTattcccaccttctcagcatg	5	12	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91467469	C	C	91467469	3	2	49	1	0	0	0	0	1	0	0	0	13765	1512	53	5	2340	5	RPS6KA5	14	91467469	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1436319	91467469	15882071	1149	54162											
SLC24A4	123041	broad.mit.edu	37	chr14	92867706	92867706	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctctttagtatgataaTattccagcaaatggaagcaa	7	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92867706	C	C	92867706	1	2	49	0	1	0	0	0	0	0	0	0	14582	1421	49	5		5	SLC24A4	14	92867706	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1400237	92867706	14481834	1150	54163											
ITPK1	3705	broad.mit.edu	37	chr14	93428791	93428791	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattagtgaggccgttcaccCacaaggcaggtacttggcac	11	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93428791	T	T	93428791	1	4	49	0	1	0	0	0	0	0	0	0	7986	609	21	4		4	ITPK1	14	93428791	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	561085	93428791	13920749	1151	54164											
PRIMA1	145270	broad.mit.edu	37	chr14	94187270	94187270	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatggggcgatgaacagaTgtgtgggaagcacctttgaa	15	6	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94187270	C	C	94187270	1	2	49	0	1	0	0	0	0	0	0	0	12598	1479	51	5		5	PRIMA1	14	94187270	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	758479	94187270	13162270	1152	54165											
SERPINA11	256394	broad.mit.edu	37	chr14	94909716	94909716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcactatggcggaccatGccactacccatacccacagc	7	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94909716	T	T	94909716	1	4	49	0	1	0	0	0	0	0	0	0	14201	1334	46	3		3	SERPINA11	14	94909716	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	722446	94909716	12439824	1153	54166											
SERPINA12	145264	broad.mit.edu	37	chr14	94962655	94962655	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagagctcagacagcagaaAtaagagggaagacaagagaa	12	5	1	6			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94962655	G	G	94962655	1	3	49	0	1	0	0	0	0	0	0	0	14202	116	4	5		5	SERPINA12	14	94962655	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	52939	94962655	12386885	1154	54167											
TCL1A	8115	broad.mit.edu	37	chr14	96178971	96178972	+	Intron	DNP	GG	TT	TT													cgtgtctagccacccagacaGggccatgaaaggcacacttt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	96178972	TT	TT	96178971	1	4	49	0	1	0	0	0	0	0	0	0	15826	1015	35	2		2	TCL1A	14	96178971	Intron	DNP	GG	TCGA-17-Z016-01A-01W-0746-08	1216316	96178971	11170569	1155	54168											
BDKRB2	624	broad.mit.edu	37	chr14	96697934	96697934	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaatcagcttttagaggaaAacatttattctggggaggtg	11	5	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96697934	T	T	96697934	1	4	49	0	1	0	0	0	0	0	0	0	1398	29	1	5		5	BDKRB2	14	96697934	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	518963	96697934	10651606	1156	54169											
ATG2B	55102	broad.mit.edu	37	chr14	96795797	96795797	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagatttaaaaaataatcttAaagaaaaagtattcaatatt	3	2	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96795797	T	T	96795797	1	4	49	0	1	0	0	0	0	0	0	0	1098	377	13	5		5	ATG2B	14	96795797	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	97863	96795797	10553743	1157	54170											
PAPOLA	10914	broad.mit.edu	37	chr14	97003388	97003388	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagctccaaacttctttcAaaagtacaagtatgtatttt	5	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97003388	T	T	97003388	3	4	49	1	0	0	0	0	1	0	0	0	11523	130	5	5	1152	5	PAPOLA	14	97003388	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	207591	97003388	10346152	1158	54171											
BCL11B	64919	broad.mit.edu	37	chr14	99682654	99682654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccattatcactgctagcCgcccactctcagtcgtgaga	8	16	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99682654	A	A	99682654	1	1	49	0	1	0	0	0	0	0	0	0	1369	667	23	1		1	BCL11B	14	99682654	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2679266	99682654	7666886	1159	54172											
WDR25	79446	broad.mit.edu	37	chr14	100864250	100864250	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtggtgtggtcttggctcActgcaacctctgcctcgcag	12	13	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100864250	T	T	100864250	1	4	49	0	1	0	0	0	0	0	0	0	17409	174	6	5		5	WDR25	14	100864250	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1181596	100864250	6485290	1160	54173											
TECPR2	9895	broad.mit.edu	37	chr14	102842586	102842586	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatgtgttcagtgaagCcatgtctacactcactctaa	8	10	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102842586	T	T	102842586	1	4	49	0	1	0	0	0	0	0	0	0	15866	754	26	4		4	TECPR2	14	102842586	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1978336	102842586	4506954	1161	54174											
CDC42BPB	9578	broad.mit.edu	37	chr14	103474195	103474195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggaggggaagacaacaGggcgggtgaggacagaaact	19	6	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103474195	T	T	103474195	1	4	49	0	1	0	0	0	0	0	0	0	3103	1015	35	2		2	CDC42BPB	14	103474195	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	631609	103474195	3875345	1162	54175											
C15orf2	23742	broad.mit.edu	37	chr15	24922227	24922227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttctttctcccaacctGtgcagaccacagactccctg	5	19	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24922227	T	T	24922227	3	4	49	1	0	0	0	0	1	0	0	0	1797	1377	48	3	1215	3	C15orf2	15	24922227	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08		24922227	77609165	1163	54176											
SNRPN	6638	broad.mit.edu	37	chr15	25179384	25179384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctgggaggcggaggttGcagtgagccgagatcatgcc	17	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25179384	T	T	25179384	1	4	49	0	1	0	0	0	0	0	0	0	14984	1334	46	3		3	SNRPN	15	25179384	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	257157	25179384	77352008	1164	54177											
SNRPN	6638	broad.mit.edu	37	chr15	25213218	25213218	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcgaggaatctgattccaAgcaaaaaccaggttagagct	10	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25213218	G	G	25213218	1	3	49	0	1	0	0	0	0	0	0	0	14984	87	3	5		5	SNRPN	15	25213218	5'UTR	SNP	A	TCGA-17-Z016-01A-01W-0746-08	33834	25213218	77318174	1165	54178											
UBE3A	7337	broad.mit.edu	37	chr15	25585397	25585397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgagaaaaaatacaataCtggtttcagtttggcattca	7	5	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25585397	A	A	25585397	1	1	49	0	1	0	0	0	0	0	0	0	17005	580	20	3		3	UBE3A	15	25585397	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	372179	25585397	76945995	1166	54179											
GABRB3	2562	broad.mit.edu	37	chr15	27159866	27159866	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatttttaaaagtacttaaTatggctttctgggacacgat	7	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27159866	G	G	27159866	1	3	49	0	1	0	0	0	0	0	0	0	6228	1421	49	5		5	GABRB3	15	27159866	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1574469	27159866	75371526	1167	54180											
GABRA5	2558	broad.mit.edu	37	chr15	27182421	27182421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggctccagactgaacCagtaccacctgatggggcag	12	11	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182421	A	A	27182421	3	1	49	1	0	0	0	0	1	0	0	0	6224	595	21	2	692	2	GABRA5	15	27182421	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	22555	27182421	75348971	1168	54181											
GABRG3	2567	broad.mit.edu	37	chr15	27700939	27700939	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgcatttgtatataTgtgcatggtatatgtatgcc	11	4	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27700939	C	C	27700939	1	2	49	0	1	0	0	0	0	0	0	0	6233	1479	51	5		5	GABRG3	15	27700939	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	518518	27700939	74830453	1169	54182											
FAM189A1	23359	broad.mit.edu	37	chr15	29526166	29526166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcagtttcactcacttcCaaatcaggacttgatgggac	8	10	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29526166	A	A	29526166	1	1	49	0	1	0	0	0	0	0	0	0	5562	609	21	2		2	FAM189A1	15	29526166	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1825227	29526166	73005226	1170	54183											
FAM189A1	23359	broad.mit.edu	37	chr15	29680829	29680829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccattactgggtatataccCaaaggattataaatcatgct	6	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29680829	A	A	29680829	1	1	49	0	1	0	0	0	0	0	0	0	5562	609	21	2		2	FAM189A1	15	29680829	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	154663	29680829	72850563	1171	54184											
FAM189A1	23359	broad.mit.edu	37	chr15	29716864	29716864	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggccctgcaaagtcctgGtttatttattccgttggtaa	11	8	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29716864	A	A	29716864	1	1	49	0	1	0	0	0	0	0	0	0	5562	1276	44	4		4	FAM189A1	15	29716864	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	36035	29716864	72814528	1172	54185											
TRPM1	4308	broad.mit.edu	37	chr15	31293996	31293996	+	3'UTR	DEL	A	-	-													cattagtggttctgactgttAaaaaaaaaaattaaagaaac							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31293996	-	-	31293996	6	5	49	0	1	1	0	1	0	0	0	0	16710	377	13	0		0	TRPM1	15	31293996	3'UTR	DEL	A	TCGA-17-Z016-01A-01W-0746-08	1577132	31293996	71237396	1173	54186											
TRPM1	4308	broad.mit.edu	37	chr15	31327786	31327786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgccaggctcacgatgtagGagatgacgatccactcctgg	12	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31327786	T	T	31327786	3	4	49	1	0	0	0	0	1	0	0	0	16710	1174	41	3	2246	3	TRPM1	15	31327786	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	33790	31327786	71203606	1174	54187											
CHRNA7	1139	broad.mit.edu	37	chr15	32332702	32332702	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttacattataccacttcaTgcataatgagagcactttat	5	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32332702	G	G	32332702	1	3	49	0	1	0	0	0	0	0	0	0	3419	1479	51	5		5	CHRNA7	15	32332702	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1004916	32332702	70198690	1175	54188											
C15orf55	256646	broad.mit.edu	37	chr15	34648891	34648891	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccacatgccaaggcaatctCcttatcatggggactgagga	10	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648891	A	A	34648891	2	1	49	1	0	0	0	0	0	0	0	1	1816	842	30	3		3	C15orf55	15	34648891	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2316189	34648891	67882501	1176	54189											
MEIS2	4212	broad.mit.edu	37	chr15	37329140	37329140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtaccaggtgaagctaCactgttgtctaaaccatccc	7	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37329140	A	A	37329140	3	1	49	1	0	0	0	0	1	0	0	0	9561	478	17	3	741	3	MEIS2	15	37329140	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2680249	37329140	65202252	1177	54190											
TMCO5A	145942	broad.mit.edu	37	chr15	38225074	38225074	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaatagtttattggaaaCtacagtatgttaagaagtca	7	4	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38225074	A	A	38225074	1	1	49	0	1	0	0	0	0	0	0	0	16122	580	20	3		3	TMCO5A	15	38225074	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	895934	38225074	64306318	1178	54191											
DISP2	85455	broad.mit.edu	37	chr15	40662562	40662562	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcgcggaaccctgtcatGgatgacaaggcaagggcagc	16	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40662562	T	T	40662562	1	4	49	0	1	0	0	0	0	0	0	0	4580	1363	47	2		2	DISP2	15	40662562	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2437488	40662562	61868830	1179	54192											
NUSAP1	51203	broad.mit.edu	37	chr15	41667974	41667974	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctccaataagaaaccagtGtttgatcttaaagcaagttt	7	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41667974	A	A	41667974	2	1	49	1	0	0	0	0	0	0	0	1	10873	1364	48	4		4	NUSAP1	15	41667974	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1005412	41667974	60863418	1180	54193											
TMEM87A	25963	broad.mit.edu	37	chr15	42525442	42525442	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggaccccttccatgccaGagaacaaaagatagagggct	11	10	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42525442	T	T	42525442	3	4	49	1	0	0	0	0	1	0	0	0	16333	942	33	3	676	3	TMEM87A	15	42525442	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	857468	42525442	60005950	1181	54194											
TGM7	116179	broad.mit.edu	37	chr15	43571883	43571883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggcttctgggtaccacCcccatgcagcagggcctgtg	14	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43571883	A	A	43571883	3	1	49	1	0	0	0	0	1	0	0	0	15958	623	22	2	530	2	TGM7	15	43571883	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1046441	43571883	58959509	1182	54195											
DUOX2	50506	broad.mit.edu	37	chr15	45393531	45393531	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggcagtggggtaggatgGgagactgtgccctcctccct	16	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45393531	A	A	45393531	1	1	49	0	1	0	0	0	0	0	0	0	4841	1247	43	4		4	DUOX2	15	45393531	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1821648	45393531	57137861	1183	54196											
CEP152	22995	broad.mit.edu	37	chr15	49048215	49048215	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacatccattttgaagaaCaagtcgacatgatttccaaa	6	9	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49048215	T	T	49048215	3	4	49	1	0	0	0	0	1	0	0	0	3278	478	17	4	1762	4	CEP152	15	49048215	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3654684	49048215	53483177	1184	54197											
C15orf33	196951	broad.mit.edu	37	chr15	49707285	49707285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactctgcctctttttctcaCttttgaacatgctttgaaag	5	10	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49707285	A	A	49707285	1	1	49	0	1	0	0	0	0	0	0	0	1804	580	20	3		3	C15orf33	15	49707285	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	659070	49707285	52824107	1185	54198											
C15orf33	196951	broad.mit.edu	37	chr15	49889065	49889065	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcaacaagagttaaaaaaGacaaagagggacattatata	8	4	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49889065	C	C	49889065	1	2	49	0	1	0	0	0	0	0	0	0	1804	957	33	4		4	C15orf33	15	49889065	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	181780	49889065	52642327	1186	54199											
UNC13C	440279	broad.mit.edu	37	chr15	54307916	54307916	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggggttagaacccttaaAtgaaacatcagctgagatgg	12	6	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54307916	G	G	54307916	3	3	49	1	0	0	0	0	1	0	0	0	17112	101	4	5	2818	5	UNC13C	15	54307916	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4418851	54307916	48223476	1187	54200											
UNC13C	440279	broad.mit.edu	37	chr15	54708083	54708083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacctacagcagacatggGgctaggggacaaggcaggct	15	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54708083	T	T	54708083	1	4	49	0	1	0	0	0	0	0	0	0	17112	1247	43	2		2	UNC13C	15	54708083	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	400167	54708083	47823309	1188	54201											
LIPC	3990	broad.mit.edu	37	chr15	58799472	58799472	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaagagaaatatacttttCtttttgctttctctaaaaaa	3	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58799472	A	A	58799472	1	1	49	0	1	0	0	0	0	0	0	0	8893	928	32	3		3	LIPC	15	58799472	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4091389	58799472	43731920	1189	54202											
ADAM10	102	broad.mit.edu	37	chr15	58902605	58902605	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccgcatgaaaacatcaCagtaacctctaaaatcgttg	6	11	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58902605	T	T	58902605	3	4	49	1	0	0	0	0	1	0	0	0	234	478	17	4	342	4	ADAM10	15	58902605	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	103133	58902605	43628787	1190	54203											
TLN2	83660	broad.mit.edu	37	chr15	63014830	63014830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actattaaagatgcccctgtGggttggcttttgttgcatta	10	7	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63014830	T	T	63014830	1	4	49	0	1	0	0	0	0	0	0	0	16071	1363	47	2		2	TLN2	15	63014830	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4112225	63014830	39516562	1191	54204											
TLN2	83660	broad.mit.edu	37	chr15	63088553	63088553	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcccctgaaactcatgatcGacttggagacgccacctggg	11	13	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63088553	T	T	63088553	1	4	49	0	1	0	0	0	0	0	0	0	16071	1073	37	3		3	TLN2	15	63088553	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	73723	63088553	39442839	1192	54205											
IQCH	64799	broad.mit.edu	37	chr15	67768233	67768233	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtagctaataatttggtgcCccttcagatagatattcttt	8	7	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67768233	G	G	67768233	1	3	49	0	1	0	0	0	0	0	0	0	7881	638	22	4		4	IQCH	15	67768233	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4679680	67768233	34763159	1193	54206											
ITGA11	22801	broad.mit.edu	37	chr15	68600057	68600057	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagaagatgggtctcaGggctgagctgctgggctagg	18	6	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68600057	T	T	68600057	1	4	49	0	1	0	0	0	0	0	0	0	7944	1015	35	2		2	ITGA11	15	68600057	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	831824	68600057	33931335	1194	54207											
HEXA	3073	broad.mit.edu	37	chr15	72637954	72637954	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaaggtgctggacatcCacaggctgctacctcttgtc	10	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72637954	T	T	72637954	1	4	49	0	1	0	0	0	0	0	0	0	7140	609	21	4		4	HEXA	15	72637954	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4037897	72637954	29893438	1195	54208											
RASGRF1	5923	broad.mit.edu	37	chr15	79327417	79327417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaactgccccaggcttttgGggtggcccctggagggggac	16	11	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79327417	T	T	79327417	1	4	49	0	1	0	0	0	0	0	0	0	13180	1247	43	2		2	RASGRF1	15	79327417	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6689463	79327417	23203975	1196	54209											
KIAA1199	57214	broad.mit.edu	37	chr15	81192983	81192983	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtctgtgtgtgtgtc	19	2	1	0	rs57724852		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81192983	C	C	81192983	1	2	49	0	1	0	0	0	0	0	0	0	8283	1392	48	4		4	KIAA1199	15	81192983	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1865566	81192983	21338409	1197	54210											
CPEB1	64506	broad.mit.edu	37	chr15	83221331	83221331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgaagcaaggatcggaCagacttctctagttcgaaga	11	9	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83221331	A	A	83221331	3	1	49	1	0	0	0	0	1	0	0	0	3832	478	17	3	606	3	CPEB1	15	83221331	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2028348	83221331	19310061	1198	54211											
AP3B2	8120	broad.mit.edu	37	chr15	83360410	83360410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatcctcaatctggaatgCagattctgagcacaaagcag	8	9	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83360410	A	A	83360410	1	1	49	0	1	0	0	0	0	0	0	0	747	725	25	3		3	AP3B2	15	83360410	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	139079	83360410	19170982	1199	54212											
SH3GL3	6457	broad.mit.edu	37	chr15	84188716	84188716	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagctaacaagttagccTgccttagtgtcacgaatgtt	9	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84188716	A	A	84188716	1	1	49	0	1	0	0	0	0	0	0	0	14365	1595	55	5		5	SH3GL3	15	84188716	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	828306	84188716	18342676	1200	54213											
SH3GL3	6457	broad.mit.edu	37	chr15	84192042	84192042	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttaaccttgagctaaaatGaccctgtggaaacaaatgag	8	8	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84192042	T	T	84192042	1	4	49	0	1	0	0	0	0	0	0	0	14365	1305	45	3		3	SH3GL3	15	84192042	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3326	84192042	18339350	1201	54214											
AGBL1	123624	broad.mit.edu	37	chr15	86922418	86922418	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctcaaagtgctaggattAccagcatgagccaccgtgcc	9	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86922418	G	G	86922418	1	3	49	0	1	0	0	0	0	0	0	0	375	406	14	5		5	AGBL1	15	86922418	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2730376	86922418	15608974	1202	54215											
AGBL1	123624	broad.mit.edu	37	chr15	87565043	87565043	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtggaggcttgcattatGaatttctgctccagaacaac	9	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87565043	A	A	87565043	1	1	49	0	1	0	0	0	0	0	0	0	375	1305	45	4		4	AGBL1	15	87565043	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	642625	87565043	14966349	1203	54216											
NTRK3	4916	broad.mit.edu	37	chr15	88445390	88445390	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcactcataaagatgacatCagaaaatatctatgttcctc	5	9	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88445390	G	G	88445390	1	3	49	0	1	0	0	0	0	0	0	0	10803	841	29	4		4	NTRK3	15	88445390	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	880347	88445390	14086002	1204	54217											
NTRK3	4916	broad.mit.edu	37	chr15	88483717	88483717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctaggaaacttcattgaCctcggagcaaagtcctttga	8	11	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88483717	A	A	88483717	1	1	49	0	1	0	0	0	0	0	0	0	10803	522	18	3		3	NTRK3	15	88483717	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	38327	88483717	14047675	1205	54218											
SLCO3A1	28232	broad.mit.edu	37	chr15	92443605	92443605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcttgctctgtcacacagGctggagtgcagtggtgtgat	14	8	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92443605	T	T	92443605	1	4	49	0	1	0	0	0	0	0	0	0	14842	1218	42	3		3	SLCO3A1	15	92443605	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3959888	92443605	10087787	1206	54219											
FAM169B	283777	broad.mit.edu	37	chr15	99046853	99046853	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaagaggaggaaagTgcgggctgcagtttccaaat	17	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99046853	A	A	99046853	1	1	49	0	1	0	0	0	0	0	0	0	5533	1711	59	5		5	FAM169B	15	99046853	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	6603248	99046853	3484539	1207	54220											
PCSK6	5046	broad.mit.edu	37	chr15	101971605	101971606	+	Missense_Mutation	DNP	CC	AA	AA													cacgttttttcctgtgtagcCcctcttccacgctgcctgga							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	101971606	AA	AA	101971605	3	1	49	1	0	0	0	0	1	0	0	0	11698	623	22	2	2887	2	PCSK6	15	101971605	Missense_Mutation	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	2924752	101971605	559787	1208	54221											
TPSB2	64499	broad.mit.edu	37	chr16	1278579	1278579	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggcagtcgccacctgggTaggaagcagtggtgttttga	18	7	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1278579	A	A	1278579	1	1	49	0	1	0	0	0	0	0	0	0	16548	1653	57	5		5	TPSB2	16	1278579	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08		1278579	89076174	1209	54222											
CLUAP1	23059	broad.mit.edu	37	chr16	3565309	3565309	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggctgaaaaggaggaccttGagctctggagagagctgggt	17	6	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3565309	T	T	3565309	1	4	49	0	1	0	0	0	0	0	0	0	3601	1305	45	3		3	CLUAP1	16	3565309	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2286730	3565309	86789444	1210	54223											
GLYR1	84656	broad.mit.edu	37	chr16	4867896	4867896	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttatgccatggtctaaagCtgtcccaggatgtaaacagg	10	9	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4867896	T	T	4867896	1	4	49	0	1	0	0	0	0	0	0	0	6547	812	28	4		4	GLYR1	16	4867896	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1302587	4867896	85486857	1211	54224											
A2BP1	54715	broad.mit.edu	37	chr16	6656488	6656488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagttattaagccccatacGcattagctgtttatcctgat	6	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6656488	T	T	6656488	1	4	49	0	1	0	0	0	0	0	0	0	3	1102	38	3		3	A2BP1	16	6656488	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1788592	6656488	83698265	1212	54225											
A2BP1	54715	broad.mit.edu	37	chr16	6761569	6761569	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagttctgccctcactctCtgtctctcctgacaccatgt	7	16	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6761569	A	A	6761569	1	1	49	0	1	0	0	0	0	0	0	0	3	928	32	3		3	A2BP1	16	6761569	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	105081	6761569	83593184	1213	54226											
A2BP1	54715	broad.mit.edu	37	chr16	6940692	6940692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctgtccccagtttcctGggatttccgtatgaatagca	9	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6940692	T	T	6940692	1	4	49	0	1	0	0	0	0	0	0	0	3	1363	47	2		2	A2BP1	16	6940692	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	179123	6940692	83414061	1214	54227											
A2BP1	54715	broad.mit.edu	37	chr16	6947865	6947865	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctgagcttatcatccatCtgtcccttcataccctatat	3	13	4	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6947865	T	T	6947865	1	4	49	0	1	0	0	0	0	0	0	0	3	928	32	4		4	A2BP1	16	6947865	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7173	6947865	83406888	1215	54228											
A2BP1	54715	broad.mit.edu	37	chr16	7016005	7016005	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagtaaatgctcaaaatgGagcgtatcatagaaaatcgg	12	5	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7016005	T	T	7016005	1	4	49	0	1	0	0	0	0	0	0	0	3	1189	41	3		3	A2BP1	16	7016005	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	68140	7016005	83338748	1216	54229											
A2BP1	54715	broad.mit.edu	37	chr16	7419151	7419151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtatcccactccggtgGgacccacagtctgcttaata	11	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7419151	T	T	7419151	1	4	49	0	1	0	0	0	0	0	0	0	3	1247	43	2		2	A2BP1	16	7419151	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	403146	7419151	82935602	1217	54230											
A2BP1	54715	broad.mit.edu	37	chr16	7441486	7441486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctccctttcttgcataGctaacacccatgtgtgcttt	5	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7441486	T	T	7441486	1	4	49	0	1	0	0	0	0	0	0	0	3	986	34	3		3	A2BP1	16	7441486	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	22335	7441486	82913267	1218	54231											
A2BP1	54715	broad.mit.edu	37	chr16	7477030	7477030	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggacagaaaaccaaacaCtgcgtgttctcactcatagg	8	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7477030	G	G	7477030	1	3	49	0	1	0	0	0	0	0	0	0	3	580	20	4		4	A2BP1	16	7477030	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	35544	7477030	82877723	1219	54232											
A2BP1	54715	broad.mit.edu	37	chr16	7477050	7477050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgtgttctcactcatagGtgggaactgaacaatgagaa	11	8	2	2	rs150994209	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7477050	T	T	7477050	1	4	49	0	1	0	0	0	0	0	0	0	3	1276	44	3		3	A2BP1	16	7477050	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	20	7477050	82877703	1220	54233											
A2BP1	54715	broad.mit.edu	37	chr16	7507946	7507946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagcatgatctttgtgccCcaggacatttgcacatgctg	9	11	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7507946	A	A	7507946	1	1	49	0	1	0	0	0	0	0	0	0	3	638	22	2		2	A2BP1	16	7507946	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	30896	7507946	82846807	1221	54234											
GRIN2A	2903	broad.mit.edu	37	chr16	9960970	9960970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacccacaattttcctgccCccactttgtcttcctatcac	2	17	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9960970	A	A	9960970	1	1	49	0	1	0	0	0	0	0	0	0	6845	638	22	2		2	GRIN2A	16	9960970	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2453024	9960970	80393783	1222	54235											
GRIN2A	2903	broad.mit.edu	37	chr16	9966148	9966148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctctctaaccccaaacagCtcagctcctaaccggtgcca	6	18	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9966148	A	A	9966148	1	1	49	0	1	0	0	0	0	0	0	0	6845	812	28	3		3	GRIN2A	16	9966148	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5178	9966148	80388605	1223	54236											
RRN3	54700	broad.mit.edu	37	chr16	15159050	15159050	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaatccacctcctcCagcgtcaatgtttaaaagta	4	10	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15159050	T	T	15159050	1	4	49	0	1	0	0	0	0	0	0	0	13795	609	21	4		4	RRN3	16	15159050	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5192902	15159050	75195703	1224	54237											
ABCC1	4363	broad.mit.edu	37	chr16	16173268	16173268	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgggccaggtgggctgcgGaaagtcgtccctgctctcag	17	11	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16173268	A	A	16173268	3	1	49	1	0	0	0	0	1	0	0	0	49	1174	41	4	2110	4	ABCC1	16	16173268	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1014218	16173268	74181485	1225	54238											
GPR139	124274	broad.mit.edu	37	chr16	20043969	20043969	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgccaccagctgggagagGatgatcactgtcaagatatt	11	9	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043969	T	T	20043969	2	4	49	1	0	0	0	0	0	0	0	1	6713	1164	41	3		3	GPR139	16	20043969	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3870701	20043969	70310784	1226	54239											
GPR139	124274	broad.mit.edu	37	chr16	20053200	20053200	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtggaggttaggcagtGgtaccctcctaccatgggaa	14	10	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20053200	T	T	20053200	1	4	49	0	1	0	0	0	0	0	0	0	6713	1363	47	2		2	GPR139	16	20053200	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	9231	20053200	70301553	1227	54240											
GPR139	124274	broad.mit.edu	37	chr16	20065934	20065934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttattttaagttcaggGgtacatcatgtgcaggtttg	10	5	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20065934	T	T	20065934	1	4	49	0	1	0	0	0	0	0	0	0	6713	1247	43	2		2	GPR139	16	20065934	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	12734	20065934	70288819	1228	54241											
GP2	2813	broad.mit.edu	37	chr16	20340560	20340560	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctactcccttgaacttcagtTccatctacctattgattgct	4	13	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20340560	A	A	20340560	1	1	49	0	1	0	0	0	0	0	0	0	6647	1798	62	5		5	GP2	16	20340560	5'Flank	SNP	T	TCGA-17-Z016-01A-01W-0746-08	274626	20340560	70014193	1229	54242											
ACSM2B	348158	broad.mit.edu	37	chr16	20559550	20559550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctcagcctccctggaaCcaaagtccactcaggcctag	8	17	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20559550	A	A	20559550	1	1	49	0	1	0	0	0	0	0	0	0	184	522	18	3		3	ACSM2B	16	20559550	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	218990	20559550	69795203	1230	54243											
PRKCB	5579	broad.mit.edu	37	chr16	24104040	24104040	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaagaaccttccacaagttCtgcagctgtcactgcttggt	8	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24104040	A	A	24104040	1	1	49	0	1	0	0	0	0	0	0	0	12614	928	32	3		3	PRKCB	16	24104040	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3544490	24104040	66250713	1231	54244											
HS3ST4	9951	broad.mit.edu	37	chr16	25933635	25933635	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgaatgggattggtacccTtagcaaagagtccccagaaa	10	8	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25933635	A	A	25933635	1	1	49	0	1	0	0	0	0	0	0	0	7434	1624	56	5		5	HS3ST4	16	25933635	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1829595	25933635	64421118	1232	54245											
HS3ST4	9951	broad.mit.edu	37	chr16	25944762	25944762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtgaagtttagcactgCtgaaaaatctagatttccac	8	7	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25944762	A	A	25944762	1	1	49	0	1	0	0	0	0	0	0	0	7434	812	28	3		3	HS3ST4	16	25944762	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	11127	25944762	64409991	1233	54246											
KIAA0556	23247	broad.mit.edu	37	chr16	27764359	27764359	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaacatgtcgtgtggaccCcatggtgttccctggggatt	13	10	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27764359	T	T	27764359	1	4	49	0	1	0	0	0	0	0	0	0	8253	638	22	4		4	KIAA0556	16	27764359	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1819597	27764359	62590394	1234	54247											
GSG1L	146395	broad.mit.edu	37	chr16	27871748	27871748	+	Intron	DEL	A	-	-													ccagcctttccagcccctgcAatatcacatgggcagtaact							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27871748	-	-	27871748	6	5	49	0	1	1	0	1	0	0	0	0	6887	145	5	0		0	GSG1L	16	27871748	Intron	DEL	A	TCGA-17-Z016-01A-01W-0746-08	107389	27871748	62483005	1235	54248											
GSG1L	146395	broad.mit.edu	37	chr16	27936921	27936921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcatagcaggagagaggtGggtgcagggaggccagttag	19	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27936921	T	T	27936921	1	4	49	0	1	0	0	0	0	0	0	0	6887	1363	47	2		2	GSG1L	16	27936921	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	65173	27936921	62417832	1236	54249											
GSG1L	146395	broad.mit.edu	37	chr16	27972159	27972159	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggcaaagccagcccactCagcctccttgtaaacatttt	7	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27972159	A	A	27972159	1	1	49	0	1	0	0	0	0	0	0	0	6887	841	29	3		3	GSG1L	16	27972159	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	35238	27972159	62382594	1237	54250											
ASPHD1	253982	broad.mit.edu	37	chr16	29916211	29916211	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgagctggtggtcggcGgtgagccccagtgctgggct	19	10	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29916211	A	A	29916211	3	1	49	1	0	0	0	0	1	0	0	0	1058	1116	39	4	994	4	ASPHD1	16	29916211	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1944052	29916211	60438542	1238	54251											
ITGAL	3683	broad.mit.edu	37	chr16	30524840	30524840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggtgaggtggcgcgcaGtggggaggacatagcctcca	17	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30524840	T	T	30524840	1	4	49	0	1	0	0	0	0	0	0	0	7956	1044	36	3		3	ITGAL	16	30524840	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	608629	30524840	59829913	1239	54252											
SRCAP	10847	broad.mit.edu	37	chr16	30722385	30722385	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaggtggatcatgccatgGagctgagcgagttggctcga	18	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30722385	T	T	30722385	4	4	49	1	0	0	0	0	0	1	0	0	15253	1175	41	3	1324	3	SRCAP	16	30722385	Nonsense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	197545	30722385	59632368	1240	54253											
ITGAM	3684	broad.mit.edu	37	chr16	31336187	31336187	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattttatttgattgcatcTaattttacttcaacatttga	3	6	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31336187	A	A	31336187	1	1	49	0	1	0	0	0	0	0	0	0	7957	1537	53	5		5	ITGAM	16	31336187	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	613802	31336187	59018566	1241	54254											
ITGAM	3684	broad.mit.edu	37	chr16	31344092	31344092	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcatagtattccattgtgtGagtgtaccataatgtattta	8	5	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31344092	T	T	31344092	1	4	49	0	1	0	0	0	0	0	0	0	7957	1305	45	3		3	ITGAM	16	31344092	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	7905	31344092	59010661	1242	54255											
MYLK3	91807	broad.mit.edu	37	chr16	46764712	46764712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttggtccaccaggccCtatgtacagccctggtattt	8	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46764712	A	A	46764712	1	1	49	0	1	0	0	0	0	0	0	0	10152	696	24	2		2	MYLK3	16	46764712	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	15420620	46764712	43590041	1243	54256											
ABCC12	94160	broad.mit.edu	37	chr16	48135383	48135383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatgaacgtcattatagCtgactttaaaaccaaacacc	5	9	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48135383	A	A	48135383	1	1	49	0	1	0	0	0	0	0	0	0	52	812	28	3		3	ABCC12	16	48135383	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1370671	48135383	42219370	1244	54257											
LONP2	83752	broad.mit.edu	37	chr16	48330040	48330040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgctaccattccagctGccttgttggacagaatggag	10	12	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48330040	T	T	48330040	3	4	49	1	0	0	0	0	1	0	0	0	8980	1319	46	3	1532	3	LONP2	16	48330040	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	194657	48330040	42024713	1245	54258											
ADCY7	113	broad.mit.edu	37	chr16	50343538	50343538	+	Frame_Shift_Del	DEL	C	-	-													cgcgagcagcaagacaagagCcctgtgtgagcccctcccgg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50343538	-	-	50343538	7	5	49	1	0	1	0	1	0	0	0	0	299	739	26	0	2207	0	ADCY7	16	50343538	Frame_Shift_Del	DEL	C	TCGA-17-Z016-01A-01W-0746-08	2013498	50343538	40011215	1246	54259											
BBS2	583	broad.mit.edu	37	chr16	56531479	56531479	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagctaaacacttcctttTataaaataaatccttaagta	4	7	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56531479	A	A	56531479	1	1	49	0	1	0	0	0	0	0	0	0	1343	1769	61	5		5	BBS2	16	56531479	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	6187941	56531479	33823274	1247	54260											
NUP93	9688	broad.mit.edu	37	chr16	56785600	56785600	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccaatattttcagtgagtGacaggtgagacttgaaccca	9	8	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56785600	A	A	56785600	1	1	49	0	1	0	0	0	0	0	0	0	10867	1305	45	4		4	NUP93	16	56785600	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	254121	56785600	33569153	1248	54261											
GOT2	2806	broad.mit.edu	37	chr16	58753273	58753273	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagctcattctttatggCctgtcagtatcatttcatgt	7	9	5	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58753273	T	T	58753273	1	4	49	0	1	0	0	0	0	0	0	0	6645	754	26	4		4	GOT2	16	58753273	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1967673	58753273	31601480	1249	54262											
CDH11	1009	broad.mit.edu	37	chr16	65026938	65026938	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctggattactgacgttcCttaaaagtgaaataaattaa	6	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65026938	A	A	65026938	5	1	49	1	0	0	0	0	0	0	1	0	3127	695	24	2	1903	2	CDH11	16	65026938	Splice_Site	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6273665	65026938	25327815	1250	54263											
DYNC1LI2	1783	broad.mit.edu	37	chr16	66761883	66761883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgagagaaagacatcCagataacaaagccagctcac	7	12	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66761883	A	A	66761883	1	1	49	0	1	0	0	0	0	0	0	0	4885	609	21	2		2	DYNC1LI2	16	66761883	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1734945	66761883	23592870	1251	54264											
HSF4	3299	broad.mit.edu	37	chr16	67203064	67203064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagtcaagccctctggtccAtagctgttctctgtgagcca	10	12	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67203064	T	T	67203064	1	4	49	0	1	0	0	0	0	0	0	0	7465	232	8	5		5	HSF4	16	67203064	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	441181	67203064	23151689	1252	54265											
KCTD19	146212	broad.mit.edu	37	chr16	67328593	67328593	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattctttctcctgagtccAtgacctgcagaaaccaagag	8	11	2	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67328593	C	C	67328593	3	2	49	1	0	0	0	0	1	0	0	0	8176	217	8	5	1324	5	KCTD19	16	67328593	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	125529	67328593	23026160	1253	54266											
NFATC3	4775	broad.mit.edu	37	chr16	68200994	68200994	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttacttataatgtaatgtAtgcgtctgaagtgcaaactg	8	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68200994	G	G	68200994	1	3	49	0	1	0	0	0	0	0	0	0	10459	464	16	5		5	NFATC3	16	68200994	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	872401	68200994	22153759	1254	54267											
CDH1	999	broad.mit.edu	37	chr16	68776487	68776487	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgggagacagggtttcacCatgttggttaggctggtcta	15	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68776487	T	T	68776487	1	4	49	0	1	0	0	0	0	0	0	0	3125	609	21	4		4	CDH1	16	68776487	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	575493	68776487	21578266	1255	54268											
SF3B3	23450	broad.mit.edu	37	chr16	70572395	70572395	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggatggaccagtatagctActctatgagatgagataggc	12	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70572395	G	G	70572395	1	3	49	0	1	0	0	0	0	0	0	0	14265	406	14	5		5	SF3B3	16	70572395	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1795908	70572395	19782358	1256	54269											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555966	76555966	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgactttttcatttgatgTggggaatgggccttttgaaa	12	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76555966	A	A	76555966	3	1	49	1	0	0	0	0	1	0	0	0	3681	1696	59	5	2646	5	CNTNAP4	16	76555966	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	5983571	76555966	13798787	1257	54270											
VAT1L	57687	broad.mit.edu	37	chr16	77899619	77899619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcatttctgactagcagGgatgccatgggctaggatcc	13	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77899619	T	T	77899619	1	4	49	0	1	0	0	0	0	0	0	0	17257	1247	43	2		2	VAT1L	16	77899619	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1343653	77899619	12455134	1258	54271											
CDH13	1012	broad.mit.edu	37	chr16	82759732	82759732	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttacttatgggaaagatatCcagacgtaaatgtgtgtgtg	11	4	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82759732	A	A	82759732	1	1	49	0	1	0	0	0	0	0	0	0	3129	870	30	3		3	CDH13	16	82759732	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4860113	82759732	7595021	1259	54272											
CDH13	1012	broad.mit.edu	37	chr16	83324469	83324469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttttcctgactgttctctcTgcctactgcctagaatgttt	6	12	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83324469	A	A	83324469	1	1	49	0	1	0	0	0	0	0	0	0	3129	1595	55	5		5	CDH13	16	83324469	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	564737	83324469	7030284	1260	54273											
RPA1	6117	broad.mit.edu	37	chr17	1764527	1764527	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctgctactctgtccggcCagctagacggcgatctcccc	9	17	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1764527	T	T	1764527	1	4	49	0	1	0	0	0	0	0	0	0	13647	609	21	4		4	RPA1	17	1764527	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08		1764527	79430683	1261	54274											
C17orf87	388325	broad.mit.edu	37	chr17	5133043	5133043	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaatatggtttacgttgtGatagttattcacgtattcac	8	5	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5133043	T	T	5133043	1	4	49	0	1	0	0	0	0	0	0	0	1906	1305	45	3		3	C17orf87	17	5133043	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3368516	5133043	76062167	1262	54275											
DLG4	1742	broad.mit.edu	37	chr17	7097798	7097798	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccgcagtccttggtcttgtCgtaatcaaacagggccctgg	12	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7097798	T	T	7097798	3	4	49	1	0	0	0	0	1	0	0	0	4597	884	31	4	892	4	DLG4	17	7097798	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1964755	7097798	74097412	1263	54276											
C17orf74	201243	broad.mit.edu	37	chr17	7330299	7330299	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccctgcctcggtgtcccGgaacgcccggcctgaggccc	12	21	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7330299	A	A	7330299	3	1	49	1	0	0	0	0	1	0	0	0	1896	1116	39	4	999	4	C17orf74	17	7330299	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	232501	7330299	73864911	1264	54277											
DNAH2	146754	broad.mit.edu	37	chr17	7644070	7644070	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctttcctctgggatgagtGaccggagggaacccgccttc	13	12	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7644070	T	T	7644070	1	4	49	0	1	0	0	0	0	0	0	0	4642	1305	45	3		3	DNAH2	17	7644070	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	313771	7644070	73551140	1265	54278											
PIK3R5	23533	broad.mit.edu	37	chr17	8790535	8790535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccatggggtggtgcccaGctcctagggcaaagaacaag	13	12	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8790535	T	T	8790535	3	4	49	1	0	0	0	0	1	0	0	0	12017	962	34	3	891	3	PIK3R5	17	8790535	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1146465	8790535	72404675	1266	54279											
STX8	9482	broad.mit.edu	37	chr17	9181556	9181556	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtggatcacctgaggtcgCgagtttgaaaccagcctgac	13	10	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9181556	T	T	9181556	1	4	49	0	1	0	0	0	0	0	0	0	15469	783	27	4		4	STX8	17	9181556	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	391021	9181556	72013654	1267	54280											
DNAH9	1770	broad.mit.edu	37	chr17	11572677	11572677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctgcctgccgttgtctcGcttccccaggtcgacctgga	10	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11572677	T	T	11572677	1	4	49	0	1	0	0	0	0	0	0	0	4648	1102	38	3		3	DNAH9	17	11572677	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2391121	11572677	69622533	1268	54281											
DNAH9	1770	broad.mit.edu	37	chr17	11812883	11812883	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggtgctcccccatgtgGctttgcacatatggtgcatc	10	13	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11812883	A	A	11812883	1	1	49	0	1	0	0	0	0	0	0	0	4648	1218	42	4		4	DNAH9	17	11812883	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	240206	11812883	69382327	1269	54282											
RICH2	9912	broad.mit.edu	37	chr17	12862136	12862136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatggaccctgctgaccGgcgccagcccgagcaggccc	13	17	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12862136	T	T	12862136	3	4	49	1	0	0	0	0	1	0	0	0	13466	1116	39	1	1507	1	RICH2	17	12862136	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1049253	12862136	68333074	1270	54283											
FAM18B	51030	broad.mit.edu	37	chr17	18693117	18693117	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaatttaattctctctaaAgaaattcacttactgaaagc	3	8	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18693117	G	G	18693117	1	3	49	0	1	0	0	0	0	0	0	0	5566	87	3	5		5	FAM18B	17	18693117	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	5830981	18693117	62502093	1271	54284											
BLMH	642	broad.mit.edu	37	chr17	28614853	28614853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaagcatatcccattggCcaccatcatttgcagggttc	7	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28614853	A	A	28614853	3	1	49	1	0	0	0	0	1	0	0	0	1452	739	26	3	969	3	BLMH	17	28614853	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	9921736	28614853	52580357	1272	54285											
CPD	1362	broad.mit.edu	37	chr17	28752439	28752439	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccagcactttgggaggtcGaggtagatggatcatttgag	14	7	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28752439	T	T	28752439	1	4	49	0	1	0	0	0	0	0	0	0	3830	1073	37	3		3	CPD	17	28752439	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	137586	28752439	52442771	1273	54286											
MYO1D	4642	broad.mit.edu	37	chr17	30959714	30959714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attccttttaccatcatcccCcgctctttttcccttcatat	1	16	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30959714	T	T	30959714	1	4	49	0	1	0	0	0	0	0	0	0	10165	638	22	4		4	MYO1D	17	30959714	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2207275	30959714	50235496	1274	54287											
ACCN1	40	broad.mit.edu	37	chr17	31434959	31434959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgttgaggtgctgcagaGctctgtcttaggtgtgggat	16	5	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31434959	T	T	31434959	1	4	49	0	1	0	0	0	0	0	0	0	128	986	34	3		3	ACCN1	17	31434959	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	475245	31434959	49760251	1275	54288											
ACCN1	40	broad.mit.edu	37	chr17	31815745	31815745	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcacgccctacctcaccctGagcctttagctcagaacagc	6	18	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31815745	T	T	31815745	1	4	49	0	1	0	0	0	0	0	0	0	128	1305	45	3		3	ACCN1	17	31815745	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	380786	31815745	49379465	1276	54289											
ACCN1	40	broad.mit.edu	37	chr17	31983865	31983865	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttttcaataaccccgAgtgttgctgaaatcaaaagg	7	9	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31983865	T	T	31983865	1	4	49	0	1	0	0	0	0	0	0	0	128	319	11	5		5	ACCN1	17	31983865	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	168120	31983865	49211345	1277	54290											
ACCN1	40	broad.mit.edu	37	chr17	32092000	32092000	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaactgctgcctatctAgccatcatcatccagcaccc	5	15	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32092000	T	T	32092000	1	4	49	0	1	0	0	0	0	0	0	0	128	435	15	5		5	ACCN1	17	32092000	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	108135	32092000	49103210	1278	54291											
KRT28	162605	broad.mit.edu	37	chr17	38953147	38953147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaatcacaggatccaggCtgaccttcgctgtcacctac	8	14	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38953147	A	A	38953147	1	1	49	0	1	0	0	0	0	0	0	0	8536	812	28	3		3	KRT28	17	38953147	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6861147	38953147	42242063	1279	54292											
KRTAP1-3	81850	broad.mit.edu	37	chr17	39191122	39191122	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttggaggagtttctgaGttttggtgatggctgccaca	14	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39191122	T	T	39191122	1	4	49	0	1	0	0	0	0	0	0	0	8574	1044	36	3		3	KRTAP1-3	17	39191122	5'Flank	SNP	G	TCGA-17-Z016-01A-01W-0746-08	237975	39191122	42004088	1280	54293											
KRTAP4-4	84616	broad.mit.edu	37	chr17	39316933	39316933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcacacagagccacaacagGagttgaccatggtgtcagag	12	10	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39316933	T	T	39316933	3	4	49	1	0	0	0	0	1	0	0	0	8625	1174	41	3	493	3	KRTAP4-4	17	39316933	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	125811	39316933	41878277	1281	54294											
KRT16	3868	broad.mit.edu	37	chr17	39767729	39767729	+	Frame_Shift_Del	DEL	C	-	-													acgtcggcctccacagtctgCcgcagggccagttcatgctc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39767729	-	-	39767729	7	5	49	1	0	1	0	1	0	0	0	0	8524	726	26	0	806	0	KRT16	17	39767729	Frame_Shift_Del	DEL	C	TCGA-17-Z016-01A-01W-0746-08	450796	39767729	41427481	1282	54295											
ACLY	47	broad.mit.edu	37	chr17	40027872	40027872	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgccttggcctcccaaagTgctgtgattacaggcatggg	12	12	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40027872	C	C	40027872	1	2	49	0	1	0	0	0	0	0	0	0	143	1711	59	5		5	ACLY	17	40027872	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	260143	40027872	41167338	1283	54296											
ACLY	47	broad.mit.edu	37	chr17	40037983	40037983	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcctcccgagtagctGgcattatatgcccctgccac	8	17	1	0	rs111955821		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40037983	C	C	40037983	1	2	49	0	1	0	0	0	0	0	0	0	143	1363	47	4		4	ACLY	17	40037983	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	10111	40037983	41157227	1284	54297											
IFI35	3430	broad.mit.edu	37	chr17	41158983	41158983	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtcagccccactggatGccgtaagtgaggaggaggga	15	10	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41158983	A	A	41158983	3	1	49	1	0	0	0	0	1	0	0	0	7586	1319	46	4	21	4	IFI35	17	41158983	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1121000	41158983	40036227	1285	54298											
MAPT	4137	broad.mit.edu	37	chr17	44043764	44043764	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagtttgagacaagcctgGgcaacatggtgaaatcctgt	13	7	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44043764	C	C	44043764	1	2	49	0	1	0	0	0	0	0	0	0	9389	1247	43	4		4	MAPT	17	44043764	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2884781	44043764	37151446	1286	54299											
LRRC37A	9884	broad.mit.edu	37	chr17	44400281	44400281	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggtacagaattttttattGgggctcatatcatgaatgtt	9	4	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44400281	A	A	44400281	1	1	49	0	1	0	0	0	0	0	0	0	9078	1363	47	4		4	LRRC37A	17	44400281	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	356517	44400281	36794929	1287	54300											
GOSR2	9570	broad.mit.edu	37	chr17	45017938	45017938	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcacccaaggatcctgcCagacagcacactttggagga	11	13	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45017938	T	T	45017938	1	4	49	0	1	0	0	0	0	0	0	0	6642	595	21	4		4	GOSR2	17	45017938	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	617657	45017938	36177272	1288	54301											
IGF2BP1	10642	broad.mit.edu	37	chr17	47121403	47121403	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatcatcggcaagaagggGcagcacatcaaacagctctc	10	13	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47121403	A	A	47121403	2	1	49	1	0	0	0	0	0	0	0	1	7643	1190	42	4		4	IGF2BP1	17	47121403	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2103465	47121403	34073807	1289	54302											
CA10	56934	broad.mit.edu	37	chr17	49850825	49850826	+	Intron	DNP	CC	AA	AA													gacattcagtaggaagacacCctcagagcctggtggagaag							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	49850826	AA	AA	49850825	1	1	49	0	1	0	0	0	0	0	0	0	2537	638	22	2		2	CA10	17	49850825	Intron	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	2729422	49850825	31344385	1290	54303											
STXBP4	252983	broad.mit.edu	37	chr17	53150205	53150205	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaatattttgtataaAcctcggaactatttcttatg	6	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53150205	C	C	53150205	1	2	49	0	1	0	0	0	0	0	0	0	15473	58	2	5		5	STXBP4	17	53150205	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3299380	53150205	28045005	1291	54304											
MSI2	124540	broad.mit.edu	37	chr17	55540911	55540911	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtctcctccccaacagcCcggggcttcttctgcctccc	9	19	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55540911	T	T	55540911	1	4	49	0	1	0	0	0	0	0	0	0	9970	638	22	4		4	MSI2	17	55540911	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2390706	55540911	25654299	1292	54305											
SFRS1	6426	broad.mit.edu	37	chr17	56084223	56084223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaagagcccccgcttcccCgttctctatgttaaggcctt	7	15	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56084223	A	A	56084223	1	1	49	0	1	0	0	0	0	0	0	0	14278	667	23	1		1	SFRS1	17	56084223	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	543312	56084223	25110987	1293	54306											
TEX14	56155	broad.mit.edu	37	chr17	56700456	56700456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcgtgcaacacagggCtcccattctacaaggcaacg	10	14	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56700456	A	A	56700456	1	1	49	0	1	0	0	0	0	0	0	0	15900	812	28	3		3	TEX14	17	56700456	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	616233	56700456	24494754	1294	54307											
KCNH6	81033	broad.mit.edu	37	chr17	61615418	61615418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagctcactctccgccccGcccccagccctgatgtacgc	9	20	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61615418	T	T	61615418	1	4	49	0	1	0	0	0	0	0	0	0	8106	1102	38	3		3	KCNH6	17	61615418	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4914962	61615418	19579792	1295	54308											
DCAF7	10238	broad.mit.edu	37	chr17	61628127	61628127	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagtgtgcggcccgataAgcgctttcgcttggcgctgg	16	11	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61628127	G	G	61628127	3	3	49	1	0	0	0	0	1	0	0	0	4308	72	3	5	91	5	DCAF7	17	61628127	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	12709	61628127	19567083	1296	54309											
LRRC37A3	374819	broad.mit.edu	37	chr17	62893402	62893402	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctccgagacgctcgtgccCcttgtaagcatgagtcccgc	11	15	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62893402	G	G	62893402	1	3	49	0	1	0	0	0	0	0	0	0	9080	638	22	4		4	LRRC37A3	17	62893402	5'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1265275	62893402	18301808	1297	54310											
AXIN2	8313	broad.mit.edu	37	chr17	63526066	63526066	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaagagcttcgggctccaAcagttcaccaaagccagacc	8	15	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63526066	G	G	63526066	1	3	49	0	1	0	0	0	0	0	0	0	1242	58	2	5		5	AXIN2	17	63526066	3'UTR	SNP	A	TCGA-17-Z016-01A-01W-0746-08	632664	63526066	17669144	1298	54311											
PITPNC1	26207	broad.mit.edu	37	chr17	65453695	65453695	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtatttttagtagagacGgggtttcaccgtgttagcca	11	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65453695	A	A	65453695	1	1	49	0	1	0	0	0	0	0	0	0	12044	1131	39	4		4	PITPNC1	17	65453695	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1927629	65453695	15741515	1299	54312											
SDK2	54549	broad.mit.edu	37	chr17	71512680	71512680	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagccccctccccttggattCcctcctcctcccttctccca	3	23	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71512680	A	A	71512680	1	1	49	0	1	0	0	0	0	0	0	0	14082	870	30	3		3	SDK2	17	71512680	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6058985	71512680	9682530	1300	54313											
C17orf77	146723	broad.mit.edu	37	chr17	72588122	72588122	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtttgtttctgcaGcatctaacacagaacctgtc	9	9	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72588122	T	T	72588122	5	4	49	1	0	0	0	0	0	0	1	0	1899	985	34	3		3	C17orf77	17	72588122	Splice_Site	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1075442	72588122	8607088	1301	54314											
C1QTNF1	114897	broad.mit.edu	37	chr17	77042826	77042826	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggccgggctgctctgtgctGatccggaggaagggatggag	19	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77042826	T	T	77042826	1	4	49	0	1	0	0	0	0	0	0	0	1982	1305	45	3		3	C1QTNF1	17	77042826	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4454704	77042826	4152384	1302	54315											
EPB41L3	23136	broad.mit.edu	37	chr18	5433879	5433879	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatcaaggcacaacttaaAtgaacacctttctgcctcta	4	14	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5433879	T	T	5433879	1	4	49	0	1	0	0	0	0	0	0	0	5196	116	4	5		5	EPB41L3	18	5433879	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08		5433879	72643369	1303	54316											
ARHGAP28	79822	broad.mit.edu	37	chr18	6851989	6851989	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgtggtgatggtttcatAggtctatatagttgttaaaa	11	3	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6851989	G	G	6851989	1	3	49	0	1	0	0	0	0	0	0	0	879	435	15	5		5	ARHGAP28	18	6851989	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1418110	6851989	71225259	1304	54317											
ANKRD12	23253	broad.mit.edu	37	chr18	9258957	9258957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcatcacttgctatacaCctgtaacactgcccaataga	4	13	2	1	rs118119355	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9258957	A	A	9258957	1	1	49	0	1	0	0	0	0	0	0	0	640	522	18	3		3	ANKRD12	18	9258957	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2406968	9258957	68818291	1305	54318											
ANKRD12	23253	broad.mit.edu	37	chr18	9275400	9275400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattgcttgaacccaggaGgtcaaggctgcagtgagctg	15	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9275400	T	T	9275400	1	4	49	0	1	0	0	0	0	0	0	0	640	1015	35	2		2	ANKRD12	18	9275400	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	16443	9275400	68801848	1306	54319											
FAM38B	63895	broad.mit.edu	37	chr18	10887367	10887367	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagccaccgctcctggccGacacacatttttaaatgacc	8	14	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10887367	T	T	10887367	1	4	49	0	1	0	0	0	0	0	0	0	5606	1073	37	3		3	FAM38B	18	10887367	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1611967	10887367	67189881	1307	54320											
CEP192	55125	broad.mit.edu	37	chr18	13040877	13040877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagaagagagaacctattGccttaataagaaaatctgat	8	6	1	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13040877	A	A	13040877	3	1	49	1	0	0	0	0	1	0	0	0	3281	1319	46	4	1908	4	CEP192	18	13040877	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2153510	13040877	65036371	1308	54321											
ANKRD30B	374860	broad.mit.edu	37	chr18	14825135	14825135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctggaaatcctgagcagGcaccaatgacttactcgctg	9	12	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14825135	T	T	14825135	1	4	49	0	1	0	0	0	0	0	0	0	659	1218	42	3		3	ANKRD30B	18	14825135	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1784258	14825135	63252113	1309	54322											
DSC3	1825	broad.mit.edu	37	chr18	28604434	28604434	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagatctgctgaatatccaTctgcagttgacgcataagca	9	10	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28604434	C	C	28604434	3	2	49	1	0	0	0	0	1	0	0	0	4807	1435	50	5	2109	5	DSC3	18	28604434	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	13779299	28604434	49472814	1310	54323											
DSC2	1824	broad.mit.edu	37	chr18	28651535	28651535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaagttactttaaaggGtattatttgaattcaagaaa	7	3	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28651535	T	T	28651535	1	4	49	0	1	0	0	0	0	0	0	0	4806	1276	44	3		3	DSC2	18	28651535	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	47101	28651535	49425713	1311	54324											
DSG1	1828	broad.mit.edu	37	chr18	28935382	28935382	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accactaaaaaaccaacaatGtgatttataacgcacaactt	3	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28935382	T	T	28935382	1	4	49	0	1	0	0	0	0	0	0	0	4816	1392	48	3		3	DSG1	18	28935382	3'UTR	SNP	G	TCGA-17-Z016-01A-01W-0746-08	283847	28935382	49141866	1312	54325											
FAM59A	64762	broad.mit.edu	37	chr18	29894560	29894560	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcactttttgttgttgtttTtttttttttgagacggagtc	9	4	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29894560	G	G	29894560	1	3	49	0	1	0	0	0	0	0	0	0	5643	1856	64	5		5	FAM59A	18	29894560	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	959178	29894560	48182688	1313	54326											
FAM59A	64762	broad.mit.edu	37	chr18	29937533	29937533	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagcaaaagccattacagacTgggaagaaggaaggctctga	12	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29937533	A	A	29937533	1	1	49	0	1	0	0	0	0	0	0	0	5643	1595	55	5		5	FAM59A	18	29937533	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	42973	29937533	48139715	1314	54327											
NOL4	8715	broad.mit.edu	37	chr18	31599588	31599588	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttggaaaggaaaagttataTtttgattttaattaatatgc	8	1	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31599588	A	A	31599588	1	1	49	0	1	0	0	0	0	0	0	0	10619	1508	52	5		5	NOL4	18	31599588	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1662055	31599588	46477660	1315	54328											
CELF4	56853	broad.mit.edu	37	chr18	34960556	34960556	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatccatctatccatccaTccattcatccaccattcatc	0	16	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34960556	G	G	34960556	1	3	49	0	1	0	0	0	0	0	0	0	3248	1450	50	5		5	CELF4	18	34960556	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3360968	34960556	43116692	1316	54329											
CELF4	56853	broad.mit.edu	37	chr18	35007357	35007357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaacccagctctccccaGggctgcatgggggatttgct	12	14	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35007357	T	T	35007357	1	4	49	0	1	0	0	0	0	0	0	0	3248	1015	35	2		2	CELF4	18	35007357	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	46801	35007357	43069891	1317	54330											
RIT2	6014	broad.mit.edu	37	chr18	40500778	40500778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctactcctttgcctctcacCactaaacaatagcaccagtg	4	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40500778	A	A	40500778	1	1	49	0	1	0	0	0	0	0	0	0	13498	609	21	2		2	RIT2	18	40500778	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5493421	40500778	37576470	1318	54331											
SYT4	6860	broad.mit.edu	37	chr18	40850781	40850781	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggcatttctcttgtcaaCagaattgaaaataaggaaga	8	6	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40850781	G	G	40850781	1	3	49	0	1	0	0	0	0	0	0	0	15595	493	17	4		4	SYT4	18	40850781	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	350003	40850781	37226467	1319	54332											
SLC14A2	8170	broad.mit.edu	37	chr18	43078267	43078267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattttactactgaaatcaCcctcagaagagttctgtgag	8	8	3	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43078267	A	A	43078267	1	1	49	0	1	0	0	0	0	0	0	0	14510	522	18	3		3	SLC14A2	18	43078267	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2227486	43078267	34998981	1320	54333											
SLC14A2	8170	broad.mit.edu	37	chr18	43132622	43132622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaagagtgtcatggcaGgcagtggttagacaaagagg	18	4	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43132622	T	T	43132622	1	4	49	0	1	0	0	0	0	0	0	0	14510	1015	35	2		2	SLC14A2	18	43132622	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	54355	43132622	34944626	1321	54334											
SLC14A2	8170	broad.mit.edu	37	chr18	43170841	43170841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcctaacaaccctgcaaCgtaatgatattatccccatc	3	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43170841	A	A	43170841	1	1	49	0	1	0	0	0	0	0	0	0	14510	551	19	3		3	SLC14A2	18	43170841	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	38219	43170841	34906407	1322	54335											
DCC	1630	broad.mit.edu	37	chr18	50292639	50292639	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatggcagcatccaggtgGggtgcctgcaattccggaag	14	12	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50292639	A	A	50292639	1	1	49	0	1	0	0	0	0	0	0	0	4315	1247	43	4		4	DCC	18	50292639	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	7121798	50292639	27784609	1323	54336											
TCF4	6925	broad.mit.edu	37	chr18	53107772	53107772	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttttagcagtgtctccatCgtccgtcaatacattaccct	5	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53107772	T	T	53107772	1	4	49	0	1	0	0	0	0	0	0	0	15817	899	31	4		4	TCF4	18	53107772	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2815133	53107772	24969476	1324	54337											
MALT1	10892	broad.mit.edu	37	chr18	56409163	56409163	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgaagtagtttatctgagaAgagagcacttactgatccaa	9	7	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56409163	T	T	56409163	3	4	49	1	0	0	0	0	1	0	0	0	9294	72	3	5	1724	5	MALT1	18	56409163	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3301391	56409163	21668085	1325	54338											
CDH20	28316	broad.mit.edu	37	chr18	59108042	59108042	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaacatgggatgggggaaGggcacaggtctcttgaggtc	19	6	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59108042	C	C	59108042	1	2	49	0	1	0	0	0	0	0	0	0	3136	1015	35	4		4	CDH20	18	59108042	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2698879	59108042	18969206	1326	54339											
SERPINB5	5268	broad.mit.edu	37	chr18	61166541	61166541	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaaggagaaggcaggtgctCtccacaaaggcaccccctgc	12	13	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61166541	T	T	61166541	1	4	49	0	1	0	0	0	0	0	0	0	14217	928	32	4		4	SERPINB5	18	61166541	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2058499	61166541	16910707	1327	54340											
TMX3	54495	broad.mit.edu	37	chr18	66378620	66378620	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catctacaagccaaatgtcaTcatttcgattttctttaaac	3	10	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66378620	A	A	66378620	3	1	49	1	0	0	0	0	1	0	0	0	16391	1435	50	5	1298	5	TMX3	18	66378620	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	5212079	66378620	11698628	1328	54341											
TMX3	54495	broad.mit.edu	37	chr18	66378673	66378673	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaaatgtttgattgtaTgtttgtgtccactttacaac	6	6	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66378673	C	C	66378673	1	2	49	0	1	0	0	0	0	0	0	0	16391	1479	51	5		5	TMX3	18	66378673	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	53	66378673	11698575	1329	54342											
CCDC102B	79839	broad.mit.edu	37	chr18	66480665	66480665	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgataggggagaggagagAagggtagaggaagggatggg	22	0	0	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66480665	G	G	66480665	1	3	49	0	1	0	0	0	0	0	0	0	2763	261	9	5		5	CCDC102B	18	66480665	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	101992	66480665	11596583	1330	54343											
CD226	10666	broad.mit.edu	37	chr18	67533437	67533437	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattacatcccaaagtctccAcctcctaatatcatcgcatt	2	14	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67533437	T	T	67533437	1	4	49	0	1	0	0	0	0	0	0	0	3016	174	6	5		5	CD226	18	67533437	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1052772	67533437	10543811	1331	54344											
CD226	10666	broad.mit.edu	37	chr18	67588247	67588247	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatctgcaggtcactgccGtcacaggacgcaattgctca	9	15	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67588247	A	A	67588247	1	1	49	0	1	0	0	0	0	0	0	0	3016	1160	40	4		4	CD226	18	67588247	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	54810	67588247	10489001	1332	54345											
NETO1	81832	broad.mit.edu	37	chr18	70417314	70417314	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccgctggacggctttatcGtgtctggacagcctgtgact	13	11	1	1	rs144601570	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70417314	A	A	70417314	2	1	49	1	0	0	0	0	0	0	0	1	10434	1136	40	4		4	NETO1	18	70417314	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2829067	70417314	7659934	1333	54346											
TSHZ1	10194	broad.mit.edu	37	chr18	73000431	73000431	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcaccaacaaaactctGggcccactgggggccaccga	10	16	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73000431	T	T	73000431	2	4	49	1	0	0	0	0	0	0	0	1	16748	1335	47	2		2	TSHZ1	18	73000431	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2583117	73000431	5076817	1334	54347											
ZNF236	7776	broad.mit.edu	37	chr18	74640002	74640002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggtcctggcacaggccGctgggcccactgccacgtct	13	17	1	0	rs76679748	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74640002	T	T	74640002	3	4	49	1	0	0	0	0	1	0	0	0	17915	1087	38	3	4626	3	ZNF236	18	74640002	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1639571	74640002	3437246	1335	54348											
NFATC1	4772	broad.mit.edu	37	chr18	77170932	77170932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccacggaccccgaggaGggctttccccgcgggctggg	16	14	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77170932	T	T	77170932	3	4	49	1	0	0	0	0	1	0	0	0	10456	991	35	2	755	2	NFATC1	18	77170932	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2530930	77170932	906316	1336	54349											
ADAMTS10	81794	broad.mit.edu	37	chr19	8654779	8654779	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcccacactcacctccccGgtacgttttccacttgtaga	6	16	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8654779	T	T	8654779	2	4	49	1	0	0	0	0	0	0	0	1	256	1115	39	1		1	ADAMTS10	19	8654779	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08		8654779	50474204	1337	54350											
MUC16	94025	broad.mit.edu	37	chr19	9059448	9059449	+	Frame_Shift_Ins	INS	-	T	T													ggattgagcagggcctgggaINStggatgttctgctagaagag							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9059449	T	T	9059448	7	5	49	1	0	1	1	0	0	0	0	0	10067	333	12	0	15853	0	MUC16	19	9059448	Frame_Shift_Ins	INS	-	TCGA-17-Z016-01A-01W-0746-08	404669	9059448	50069535	1338	54351											
MUC16	94025	broad.mit.edu	37	chr19	9083754	9083754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttgaggtctctgacatGgtcagggtagtctctgggac	13	9	3	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9083754	T	T	9083754	2	4	49	1	0	0	0	0	0	0	0	1	10067	1335	47	2		2	MUC16	19	9083754	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	24306	9083754	50045229	1339	54352											
COL5A3	50509	broad.mit.edu	37	chr19	10087234	10087235	+	Frame_Shift_Ins	INS	-	A	A													aaaagatgggggcactcaccINSgggggacctgggtgtcctgc					rs146470482	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10087235	A	A	10087234	7	5	49	1	0	1	1	0	0	0	0	0	3730	666	23	0	1987	0	COL5A3	19	10087234	Frame_Shift_Ins	INS	-	TCGA-17-Z016-01A-01W-0746-08	1003480	10087234	49041749	1340	54353											
BEST2	54831	broad.mit.edu	37	chr19	12863232	12863232	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcactgggggctggactagActgagtaaagctgggaggag	19	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12863232	G	G	12863232	1	3	49	0	1	0	0	0	0	0	0	0	1410	290	10	5		5	BEST2	19	12863232	5'Flank	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2775998	12863232	46265751	1341	54354											
SLC27A1	376497	broad.mit.edu	37	chr19	17608205	17608205	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcacggagcgcttcggcGtacgccaaatcggggagttc	14	11	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17608205	A	A	17608205	3	1	49	1	0	0	0	0	1	0	0	0	14639	1145	40	4	1164	4	SLC27A1	19	17608205	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4744973	17608205	41520778	1342	54355											
JAK3	3718	broad.mit.edu	37	chr19	17949164	17949164	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggatgatgtgggtgggcTgtgacctctctggaccacga	15	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17949164	A	A	17949164	3	1	49	1	0	0	0	0	1	0	0	0	8009	1580	55	5	1953	5	JAK3	19	17949164	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	340959	17949164	41179819	1343	54356											
C19orf50	79036	broad.mit.edu	37	chr19	18679134	18679134	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgagggcagccgttagGggtcacatggacaataagtc	17	7	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18679134	A	A	18679134	1	1	49	0	1	0	0	0	0	0	0	0	1951	1247	43	4		4	C19orf50	19	18679134	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	729970	18679134	40449849	1344	54357											
C19orf2	8725	broad.mit.edu	37	chr19	30496725	30496725	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagaatacacttttaaattcAtaggatgccaacatttttct	4	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30496725	T	T	30496725	1	4	49	0	1	0	0	0	0	0	0	0	1930	232	8	5		5	C19orf2	19	30496725	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	11817591	30496725	28632258	1345	54358											
ZNF536	9745	broad.mit.edu	37	chr19	30886413	30886413	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactcagggtcacccagacCttggtttatctgccaaagaa	9	11	3	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30886413	T	T	30886413	1	4	49	0	1	0	0	0	0	0	0	0	18101	696	24	4		4	ZNF536	19	30886413	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	389688	30886413	28242570	1346	54359											
ZNF536	9745	broad.mit.edu	37	chr19	30957932	30957932	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatttttgtatttttagtaGaaatggagtttcaccatgtt	7	3	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30957932	A	A	30957932	1	1	49	0	1	0	0	0	0	0	0	0	18101	957	33	4		4	ZNF536	19	30957932	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	71519	30957932	28171051	1347	54360											
ZNF536	9745	broad.mit.edu	37	chr19	30995236	30995237	+	Intron	DNP	CC	AA	AA													ccctcccaccagcctccttcCctattttccttccttccttc							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	30995237	AA	AA	30995236	1	1	49	0	1	0	0	0	0	0	0	0	18101	638	22	2		2	ZNF536	19	30995236	Intron	DNP	CC	TCGA-17-Z016-01A-01W-0746-08	37304	30995236	28133747	1348	54361											
ZNF536	9745	broad.mit.edu	37	chr19	31039049	31039049	+	Silent	SNP	C	A	A													ccagacatcctgaggggggcCttcaagggtctccctggaat							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039049	A	A	31039049	2	1	49	1	0	0	0	0	0	0	0	1	18101	668	24	2		2	ZNF536	19	31039049	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	43813	31039049	28089934	1349	54362	261	2									
ZNF536	9745	broad.mit.edu	37	chr19	31039059	31039059	+	Missense_Mutation	SNP	C	A	A													tgaggggggccttcaagggtCtccctggaatcgacttcaga							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039059	A	A	31039059	3	1	49	1	0	0	0	0	1	0	0	0	18101	913	32	3	2543	3	ZNF536	19	31039059	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	10	31039059	28089924	1350	54363	261	2									
ZNF536	9745	broad.mit.edu	37	chr19	31044582	31044582	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaactggtagcatctgtaagCaggctgagggcaggcactgc	15	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31044582	G	G	31044582	1	3	49	0	1	0	0	0	0	0	0	0	18101	725	25	4		4	ZNF536	19	31044582	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5523	31044582	28084401	1351	54364											
DPY19L3	147991	broad.mit.edu	37	chr19	32943958	32943958	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgttttctgcattatttgtAagctgaggtgtatccacctc	9	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32943958	T	T	32943958	1	4	49	0	1	0	0	0	0	0	0	0	4782	377	13	5		5	DPY19L3	19	32943958	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1899376	32943958	26185025	1352	54365											
FXYD5	53827	broad.mit.edu	37	chr19	35649125	35649125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatggctggattaattaaGccatttctattacattaaag	6	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35649125	T	T	35649125	1	4	49	0	1	0	0	0	0	0	0	0	6181	986	34	3		3	FXYD5	19	35649125	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2705167	35649125	23479858	1353	54366											
APLP1	333	broad.mit.edu	37	chr19	36369327	36369327	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggtggggcatgtctgtAgtcccagctgctcaggaggc	17	9	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36369327	T	T	36369327	1	4	49	0	1	0	0	0	0	0	0	0	780	435	15	5		5	APLP1	19	36369327	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	720202	36369327	22759656	1354	54367											
ZNF540	163255	broad.mit.edu	37	chr19	38103085	38103085	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagaaatcttatgaatgtAaagaatgtggaaaagttttt	9	1	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38103085	G	G	38103085	3	3	49	1	0	0	0	0	1	0	0	0	18102	363	13	5	918	5	ZNF540	19	38103085	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1733758	38103085	21025898	1355	54368											
FCGBP	8857	broad.mit.edu	37	chr19	40419930	40419930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggccagtgcattggcagCttgacccccaccccgcagag	11	15	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40419930	A	A	40419930	3	1	49	1	0	0	0	0	1	0	0	0	5835	797	28	3	13277	3	FCGBP	19	40419930	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2316845	40419930	18709053	1356	54369											
SPTBN4	57731	broad.mit.edu	37	chr19	41026139	41026139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagggacatgcgggggtGgggaggagggtgtttcctgg	23	5	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41026139	T	T	41026139	1	4	49	0	1	0	0	0	0	0	0	0	15239	1363	47	2		2	SPTBN4	19	41026139	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	606209	41026139	18102844	1357	54370											
CYP2F1	1572	broad.mit.edu	37	chr19	41660642	41660642	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagatagagaccaacctgGctaacacggtgaaacccaat	10	10	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41660642	C	C	41660642	1	2	49	0	1	0	0	0	0	0	0	0	4204	1218	42	4		4	CYP2F1	19	41660642	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	634503	41660642	17468341	1358	54371											
CEACAM3	1084	broad.mit.edu	37	chr19	42314328	42314328	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggataaggctctcctccCaccctgctgctcactcctgt	9	16	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42314328	T	T	42314328	1	4	49	0	1	0	0	0	0	0	0	0	3223	609	21	4		4	CEACAM3	19	42314328	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	653686	42314328	16814655	1359	54372											
TMEM145	284339	broad.mit.edu	37	chr19	42824382	42824382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacctgcctggggtctgCgtgtgtacatggcaggcgag	18	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42824382	A	A	42824382	1	1	49	0	1	0	0	0	0	0	0	0	16182	783	27	3		3	TMEM145	19	42824382	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	510054	42824382	16304601	1360	54373											
PSG6	5675	broad.mit.edu	37	chr19	43552632	43552632	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtgcatttacttttctTtgtaaaaacacggtgcaggg	9	8	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43552632	C	C	43552632	1	2	49	0	1	0	0	0	0	0	0	0	12765	1856	64	5		5	PSG6	19	43552632	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	728250	43552632	15576351	1361	54374											
PSG4	5672	broad.mit.edu	37	chr19	43706895	43706895	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgactctgatggttgaGgcaggtgatttagttctgga	14	6	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43706895	T	T	43706895	1	4	49	0	1	0	0	0	0	0	0	0	12763	1015	35	2		2	PSG4	19	43706895	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	154263	43706895	15422088	1362	54375											
TEX101	83639	broad.mit.edu	37	chr19	43922000	43922000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctggaggcaggacctgCccttaactgtctctctcatt	8	13	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43922000	A	A	43922000	1	1	49	0	1	0	0	0	0	0	0	0	15895	754	26	3		3	TEX101	19	43922000	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	215105	43922000	15206983	1363	54376											
TEX101	83639	broad.mit.edu	37	chr19	43922303	43922303	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acatctctgtctctcccgatCcttccttgttctataggtgg	7	13	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43922303	T	T	43922303	1	4	49	0	1	0	0	0	0	0	0	0	15895	870	30	4		4	TEX101	19	43922303	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	303	43922303	15206680	1364	54377											
ETHE1	23474	broad.mit.edu	37	chr19	44011458	44011458	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctccctcagacccaggagTccaggcccccagcccctcct	7	22	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44011458	C	C	44011458	1	2	49	0	1	0	0	0	0	0	0	0	5314	1682	58	5		5	ETHE1	19	44011458	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	89155	44011458	15117525	1365	54378											
IRGC	56269	broad.mit.edu	37	chr19	44223594	44223594	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacgatgatgcgttgctcaTccactcactgcgtggctacc	9	14	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44223594	A	A	44223594	3	1	49	1	0	0	0	0	1	0	0	0	7908	1435	50	5	886	5	IRGC	19	44223594	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	212136	44223594	14905389	1366	54379											
KCNN4	3783	broad.mit.edu	37	chr19	44283999	44283999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccaggccactgtaagcCtacctctccactatttccct	6	16	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44283999	A	A	44283999	1	1	49	0	1	0	0	0	0	0	0	0	8151	696	24	2		2	KCNN4	19	44283999	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	60405	44283999	14844984	1367	54380											
CARD8	22900	broad.mit.edu	37	chr19	48733993	48733993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagcagtgagacggcacgCaccccagcggcccccacagc	11	18	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48733993	A	A	48733993	1	1	49	0	1	0	0	0	0	0	0	0	2677	725	25	3		3	CARD8	19	48733993	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4449994	48733993	10394990	1368	54381											
SHANK1	50944	broad.mit.edu	37	chr19	51175329	51175329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggcaggaaagaaggacGctcgtaacttggctgggcac	16	8	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51175329	T	T	51175329	3	4	49	1	0	0	0	0	1	0	0	0	14377	1087	38	3	3877	3	SHANK1	19	51175329	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2441336	51175329	7953654	1369	54382											
KLK7	5650	broad.mit.edu	37	chr19	51480936	51480936	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgcacaccaacggtccCcctgagtcaccctagaggga	9	17	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51480936	A	A	51480936	2	1	49	1	0	0	0	0	0	0	0	1	8480	610	22	2		2	KLK7	19	51480936	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	305607	51480936	7648047	1370	54383											
SIGLEC7	27036	broad.mit.edu	37	chr19	51655579	51655579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaggataacctccccatGtcaatatccttaacctagct	4	14	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51655579	T	T	51655579	1	4	49	0	1	0	0	0	0	0	0	0	14426	1392	48	3		3	SIGLEC7	19	51655579	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	174643	51655579	7473404	1371	54384											
IGLON5	402665	broad.mit.edu	37	chr19	51813678	51813678	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggggcctggcctcctgggtCtgagggaggagggggctggg	24	8	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51813678	A	A	51813678	1	1	49	0	1	0	0	0	0	0	0	0	7665	928	32	3		3	IGLON5	19	51813678	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	158099	51813678	7315305	1372	54385											
SIGLEC6	946	broad.mit.edu	37	chr19	52033171	52033171	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggttgccgtcagcatcacaGagcagccgcagagcctggcc	14	14	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52033171	T	T	52033171	2	4	49	1	0	0	0	0	0	0	0	1	14425	929	33	3		3	SIGLEC6	19	52033171	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	219493	52033171	7095812	1373	54386											
ZNF616	90317	broad.mit.edu	37	chr19	52627435	52627435	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcatctgtgagaaagttaTtggtccctaattttagtttg	10	5	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52627435	C	C	52627435	1	2	49	0	1	0	0	0	0	0	0	0	18168	1508	52	5		5	ZNF616	19	52627435	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	594264	52627435	6501548	1374	54387											
PRKCG	5582	broad.mit.edu	37	chr19	54403758	54403758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagccccaggaatttccGtggaggaaatcacgcccctg	12	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54403758	T	T	54403758	1	4	49	0	1	0	0	0	0	0	0	0	12618	1160	40	3		3	PRKCG	19	54403758	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1776323	54403758	4725225	1375	54388											
LILRA4	23547	broad.mit.edu	37	chr19	54849465	54849465	+	Frame_Shift_Del	DEL	C	-	-													cacgttcactcctgaggtcaCcacagggcttggcagtgcgg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54849465	-	-	54849465	7	5	49	1	0	1	0	1	0	0	0	0	8859	507	18	0	1122	0	LILRA4	19	54849465	Frame_Shift_Del	DEL	C	TCGA-17-Z016-01A-01W-0746-08	445707	54849465	4279518	1376	54389											
LAIR1	3903	broad.mit.edu	37	chr19	54876412	54876412	+	5'UTR	DEL	G	-	-													gcggtggggtggggagacatGgcccaggtcccagcagtgca							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54876412	-	-	54876412	6	5	49	0	1	1	0	1	0	0	0	0	8674	1363	47	0		0	LAIR1	19	54876412	5'UTR	DEL	G	TCGA-17-Z016-01A-01W-0746-08	26947	54876412	4252571	1377	54390											
KIR3DL3	115653	broad.mit.edu	37	chr19	55246672	55246672	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgtgagacaattcatataGaggaactgctatgattagct	9	5	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55246672	T	T	55246672	1	4	49	0	1	0	0	0	0	0	0	0	8393	957	33	3		3	KIR3DL3	19	55246672	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	370260	55246672	3882311	1378	54391											
SYT5	6861	broad.mit.edu	37	chr19	55685808	55685808	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctggtttctagggagatgCtaaaaagtctccctccgcct	9	12	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55685808	T	T	55685808	1	4	49	0	1	0	0	0	0	0	0	0	15596	812	28	4		4	SYT5	19	55685808	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	439136	55685808	3443175	1379	54392											
TMEM150B	284417	broad.mit.edu	37	chr19	55831595	55831595	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaactcctgggacccagGgagggaagtgaggggagcaa	17	8	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55831595	A	A	55831595	1	1	49	0	1	0	0	0	0	0	0	0	16191	1247	43	4		4	TMEM150B	19	55831595	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	145787	55831595	3297388	1380	54393											
NLRP4	147945	broad.mit.edu	37	chr19	56372702	56372702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtatatgtgttacaagtgGctcgtgttgaccgcctgcct	12	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56372702	T	T	56372702	1	4	49	0	1	0	0	0	0	0	0	0	10574	1218	42	3		3	NLRP4	19	56372702	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	541107	56372702	2756281	1381	54394											
ZFP28	140612	broad.mit.edu	37	chr19	57059327	57059327	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctggtcatagttcagctgaCtcagacacgcaacatcttca	8	12	5	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57059327	G	G	57059327	1	3	49	0	1	0	0	0	0	0	0	0	17768	580	20	4		4	ZFP28	19	57059327	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	686625	57059327	2069656	1382	54395											
ZIM2	23619	broad.mit.edu	37	chr19	57293507	57293507	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaactatcccagagagaggaGaagggacgtgattagagagg	16	5	0	5			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57293507	A	A	57293507	1	1	49	0	1	0	0	0	0	0	0	0	17810	957	33	4		4	ZIM2	19	57293507	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	234180	57293507	1835476	1383	54396											
USP29	57663	broad.mit.edu	37	chr19	57641420	57641420	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatctctccatcaacctgcaCcaagaaacaaaaccacttcc	2	16	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57641420	T	T	57641420	2	4	49	1	0	0	0	0	0	0	0	1	17186	506	18	4		4	USP29	19	57641420	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	347913	57641420	1487563	1384	54397											
ZNF586	54807	broad.mit.edu	37	chr19	58290168	58290168	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccttctaagcagagcacGtgtatacatatatacaaaga	7	9	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58290168	A	A	58290168	2	1	49	1	0	0	0	0	0	0	0	1	18146	1132	40	4		4	ZNF586	19	58290168	Silent	SNP	G	TCGA-17-Z016-01A-01W-0746-08	648748	58290168	838815	1385	54398											
ZNF8	7554	broad.mit.edu	37	chr19	58805982	58805982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtcgtttaaccataacGcacacctcaccgtgcacaag	8	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58805982	T	T	58805982	3	4	49	1	0	0	0	0	1	0	0	0	18296	1087	38	3	822	3	ZNF8	19	58805982	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	515814	58805982	323001	1386	54399											
TMC2	117532	broad.mit.edu	37	chr20	2597714	2597715	+	Intron	DNP	CC	AA	AA													ggtgtttggtttctgccattCcaggatgggctccttctatg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2597715	AA	AA	2597714	1	1	49	0	1	0	0	0	0	0	0	0	16108	870	30	3		3	TMC2	20	2597714	Intron	DNP	CC	TCGA-17-Z016-01A-01W-0746-08		2597714	60427806	1387	54400											
ATRN	8455	broad.mit.edu	37	chr20	3605950	3605950	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctcacaccacaaaagcatAcaaaagccccatctctttca	2	17	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3605950	T	T	3605950	1	4	49	0	1	0	0	0	0	0	0	0	1210	406	14	5		5	ATRN	20	3605950	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1008236	3605950	59419570	1388	54401											
PLCB1	23236	broad.mit.edu	37	chr20	8176417	8176417	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttggcacttttaaaaagtAttggtcagttactttatgca	7	7	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8176417	G	G	8176417	1	3	49	0	1	0	0	0	0	0	0	0	12122	464	16	5		5	PLCB1	20	8176417	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	4570467	8176417	54849103	1389	54402											
C20orf103	24141	broad.mit.edu	37	chr20	9510178	9510178	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatttctgaaaaatagtccCaaagcttccttgagaaatct	5	9	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9510178	G	G	9510178	1	3	49	0	1	0	0	0	0	0	0	0	2097	609	21	4		4	C20orf103	20	9510178	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1333761	9510178	53515342	1390	54403											
C20orf103	24141	broad.mit.edu	37	chr20	9510592	9510592	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcaaacaggcctgggtatCtgaggcttgcttggcttgtg	13	8	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9510592	A	A	9510592	1	1	49	0	1	0	0	0	0	0	0	0	2097	928	32	3		3	C20orf103	20	9510592	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08	414	9510592	53514928	1391	54404											
PAK7	57144	broad.mit.edu	37	chr20	9521521	9521521	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctcctgagtagctgggaCtacaggcacccgccaccatg	11	15	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9521521	A	A	9521521	1	1	49	0	1	0	0	0	0	0	0	0	11499	580	20	3		3	PAK7	20	9521521	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	10929	9521521	53503999	1392	54405											
SNX5	27131	broad.mit.edu	37	chr20	17929496	17929496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaacagacttctggtcCtgcactgctctgagaagctg	9	10	2	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17929496	A	A	17929496	1	1	49	0	1	0	0	0	0	0	0	0	15019	696	24	2		2	SNX5	20	17929496	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8407975	17929496	45096024	1393	54406											
OVOL2	58495	broad.mit.edu	37	chr20	18005392	18005392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttttgagaaacgagctgCccggatgggcactgttcacg	12	10	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18005392	A	A	18005392	3	1	49	1	0	0	0	0	1	0	0	0	11421	739	26	3	115	3	OVOL2	20	18005392	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	75896	18005392	45020128	1394	54407											
RALGAPA2	57186	broad.mit.edu	37	chr20	20651907	20651907	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catccctgacttacaaggcaGacagcagctctctttacata	6	13	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20651907	C	C	20651907	1	2	49	0	1	0	0	0	0	0	0	0	13122	957	33	4		4	RALGAPA2	20	20651907	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2646515	20651907	42373613	1395	54408											
PAX1	5075	broad.mit.edu	37	chr20	21689905	21689905	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggctttctccccgcctgcGcctacccggcctccaaccag	9	21	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21689905	A	A	21689905	3	1	49	1	0	0	0	0	1	0	0	0	11572	1087	38	4	1119	4	PAX1	20	21689905	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1037998	21689905	41335615	1396	54409											
NINL	22981	broad.mit.edu	37	chr20	25456963	25456963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcctgctcctgggtgccCctgctccagcttcgtgctcg	13	16	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25456963	A	A	25456963	3	1	49	1	0	0	0	0	1	0	0	0	10515	622	22	2	1216	2	NINL	20	25456963	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3767058	25456963	37568557	1397	54410											
HM13	81502	broad.mit.edu	37	chr20	30147503	30147503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccagggattctccagtGgccttcaggagcccagagaa	11	12	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30147503	T	T	30147503	1	4	49	0	1	0	0	0	0	0	0	0	7284	1363	47	2		2	HM13	20	30147503	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4690540	30147503	32878017	1398	54411											
CBFA2T2	9139	broad.mit.edu	37	chr20	32194715	32194715	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaattgttgtctgtttttGcaaacttttagaaaacccta	5	7	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32194715	A	A	32194715	1	1	49	0	1	0	0	0	0	0	0	0	2723	1334	46	4		4	CBFA2T2	20	32194715	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2047212	32194715	30830805	1399	54412											
EPB41L1	2036	broad.mit.edu	37	chr20	34788913	34788913	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaggttactgtcttcaCcttcctgtgccccttcctcc	6	17	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34788913	T	T	34788913	1	4	49	0	1	0	0	0	0	0	0	0	5194	522	18	4		4	EPB41L1	20	34788913	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2594198	34788913	28236607	1400	54413											
VSTM2L	128434	broad.mit.edu	37	chr20	36541078	36541078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttggaggtgaggctatGggagcatctggaaggttaga	17	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36541078	T	T	36541078	1	4	49	0	1	0	0	0	0	0	0	0	17357	1363	47	2		2	VSTM2L	20	36541078	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1752165	36541078	26484442	1401	54414											
PTPRT	11122	broad.mit.edu	37	chr20	41095497	41095497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggttggcctcaggtctgGggcagggacattaaaagaat	15	6	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41095497	T	T	41095497	1	4	49	0	1	0	0	0	0	0	0	0	12920	1247	43	2		2	PTPRT	20	41095497	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4554419	41095497	21930023	1402	54415											
PTPRT	11122	broad.mit.edu	37	chr20	41180799	41180799	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggactcatgatgaagatgaGaccagatgaaggaatacatg	12	5	1	6			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41180799	T	T	41180799	1	4	49	0	1	0	0	0	0	0	0	0	12920	957	33	3		3	PTPRT	20	41180799	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	85302	41180799	21844721	1403	54416											
PTPRT	11122	broad.mit.edu	37	chr20	41473281	41473281	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatgacttcccccacatgaCaatgggctaagtggggctct	10	13	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41473281	G	G	41473281	1	3	49	0	1	0	0	0	0	0	0	0	12920	493	17	4		4	PTPRT	20	41473281	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	292482	41473281	21552239	1404	54417											
MYBL2	4605	broad.mit.edu	37	chr20	42331376	42331376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccagcactgaagtcgggGgctctggcattggcacaccg	13	15	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42331376	T	T	42331376	3	4	49	1	0	0	0	0	1	0	0	0	10104	1232	43	2	1228	2	MYBL2	20	42331376	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	858095	42331376	20694144	1405	54418											
TOX2	84969	broad.mit.edu	37	chr20	42546011	42546011	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccacctttacactagtcaCtatcaaagctggaggggaaa	8	11	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42546011	G	G	42546011	1	3	49	0	1	0	0	0	0	0	0	0	16502	580	20	4		4	TOX2	20	42546011	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	214635	42546011	20479509	1406	54419											
CDH22	64405	broad.mit.edu	37	chr20	44899297	44899297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggagttcccatacaggGttatactccaggggctctgt	11	9	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44899297	T	T	44899297	1	4	49	0	1	0	0	0	0	0	0	0	3137	1276	44	3		3	CDH22	20	44899297	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2353286	44899297	18126223	1407	54420											
CDH22	64405	broad.mit.edu	37	chr20	44926496	44926496	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactacccaggtgccctaccTcagctgacccatcctagcca	6	19	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44926496	A	A	44926496	1	1	49	0	1	0	0	0	0	0	0	0	3137	1566	54	5		5	CDH22	20	44926496	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	27199	44926496	18099024	1408	54421											
PREX1	57580	broad.mit.edu	37	chr20	47280291	47280291	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtggctcagggttttcTgaatctgaccacttctaacc	8	11	5	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47280291	A	A	47280291	1	1	49	0	1	0	0	0	0	0	0	0	12582	1595	55	5		5	PREX1	20	47280291	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	2353795	47280291	15745229	1409	54422											
PREX1	57580	broad.mit.edu	37	chr20	47307482	47307482	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaccccaaagctgctgctCactctcgcgctgctcccgct	8	19	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47307482	T	T	47307482	1	4	49	0	1	0	0	0	0	0	0	0	12582	841	29	4		4	PREX1	20	47307482	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	27191	47307482	15718038	1410	54423											
TSHZ2	128553	broad.mit.edu	37	chr20	51621236	51621236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaatgtgtgggcgtcCgtgtgacatcacatgccata	11	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51621236	A	A	51621236	1	1	49	0	1	0	0	0	0	0	0	0	16749	667	23	1		1	TSHZ2	20	51621236	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4313754	51621236	11404284	1411	54424											
TSHZ2	128553	broad.mit.edu	37	chr20	52024815	52024815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcctgatgtccccagcGttcgacacagagtccagtac	8	14	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52024815	A	A	52024815	1	1	49	0	1	0	0	0	0	0	0	0	16749	1160	40	4		4	TSHZ2	20	52024815	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	403579	52024815	11000705	1412	54425											
RAB22A	57403	broad.mit.edu	37	chr20	56929224	56929224	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttccagagaagtcatggaGagagatgcaaaggactacgc	12	9	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56929224	T	T	56929224	3	4	49	1	0	0	0	0	1	0	0	0	13017	933	33	3	412	3	RAB22A	20	56929224	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	4904409	56929224	6096296	1413	54426											
TH1L	51497	broad.mit.edu	37	chr20	57564958	57564958	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtacctgtttgcccaggccAtgatgtccgtgctggcccag	12	14	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57564958	G	G	57564958	3	3	49	1	0	0	0	0	1	0	0	0	15962	217	8	5	756	5	TH1L	20	57564958	Missense_Mutation	SNP	A	TCGA-17-Z016-01A-01W-0746-08	635734	57564958	5460562	1414	54427											
CDH4	1002	broad.mit.edu	37	chr20	59886915	59886915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacgcgccagggcggggCggccagtgcatggcacagca	19	12	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59886915	A	A	59886915	1	1	49	0	1	0	0	0	0	0	0	0	3142	783	27	3		3	CDH4	20	59886915	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2321957	59886915	3138605	1415	54428											
CDH4	1002	broad.mit.edu	37	chr20	60363463	60363463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggttaaaggatttctcCtggcttggaagggaagtgat	13	5	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60363463	A	A	60363463	1	1	49	0	1	0	0	0	0	0	0	0	3142	696	24	2		2	CDH4	20	60363463	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	476548	60363463	2662057	1416	54429											
TAF4	6874	broad.mit.edu	37	chr20	60578330	60578335	+	Splice_Site	DEL	ACTACA	-	-													cggcgggtttcaccacagggActacaaaacaaacacacagt							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60578335	-	-	60578330	8	5	49	1	0	1	0	1	0	0	1	0	15645	289	10	0	913	0	TAF4	20	60578330	Splice_Site	DEL	ACTACA	TCGA-17-Z016-01A-01W-0746-08	214867	60578330	2447190	1417	54430											
SLC17A9	63910	broad.mit.edu	37	chr20	61598073	61598073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtggccaacacagccgGggccttggcaggtgaggggc	19	10	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61598073	T	T	61598073	3	4	49	1	0	0	0	0	1	0	0	0	14537	1232	43	2	1182	2	SLC17A9	20	61598073	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1019743	61598073	1427447	1418	54431											
TPTE	7179	broad.mit.edu	37	chr21	10917291	10917291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctataatcccagccacttgGgaggctgaggcaggagaatc	12	11	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10917291	T	T	10917291	1	4	49	0	1	0	0	0	0	0	0	0	16554	1247	43	2		2	TPTE	21	10917291	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08		10917291	37212604	1419	54432											
TPTE	7179	broad.mit.edu	37	chr21	10971774	10971774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtagctggaggcctcaAgcaagggctccatcccatgt	11	13	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971774	T	T	10971774	1	4	49	0	1	0	0	0	0	0	0	0	16554	87	3	5		5	TPTE	21	10971774	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	54483	10971774	37158121	1420	54433											
BAGE2	85319	broad.mit.edu	37	chr21	11039311	11039311	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaacgacttcaatgttttcTgtcacttccattttatcttc	4	10	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039311	A	A	11039311	1	1	49	0	1	0	0	0	0	0	0	0	1297	1595	55	5		5	BAGE2	21	11039311	3'UTR	SNP	T	TCGA-17-Z016-01A-01W-0746-08	67537	11039311	37090584	1421	54434											
BAGE2	85319	broad.mit.edu	37	chr21	11065634	11065634	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctttaacataaccataaaTaaaaacatgaataaatctga	2	6	2	2	rs12162573		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11065634	G	G	11065634	1	3	49	0	1	0	0	0	0	0	0	0	1297	1421	49	5		5	BAGE2	21	11065634	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	26323	11065634	37064261	1422	54435											
JAM2	58494	broad.mit.edu	37	chr21	27081796	27081796	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaatgcatgtctttctcCtatgtcaactaattttctat	3	10	4	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27081796	A	A	27081796	1	1	49	0	1	0	0	0	0	0	0	0	8013	696	24	2		2	JAM2	21	27081796	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	16016162	27081796	21048099	1423	54436											
KRTAP23-1	337963	broad.mit.edu	37	chr21	31720749	31720749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggggtttcccagcaagtctCctgaaagcccttgcagagag	12	11	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31720749	A	A	31720749	3	1	49	1	0	0	0	0	1	0	0	0	8613	855	30	3	25	3	KRTAP23-1	21	31720749	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	4638953	31720749	16409146	1424	54437											
TIAM1	7074	broad.mit.edu	37	chr21	32554806	32554806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtccactcggtggggcGggctttccagcagctccact	14	15	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32554806	T	T	32554806	3	4	49	1	0	0	0	0	1	0	0	0	16013	1116	39	1	2012	1	TIAM1	21	32554806	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	834057	32554806	15575089	1425	54438											
IFNGR2	3460	broad.mit.edu	37	chr21	34793812	34793812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtaaatggttcacggccGacatcatgtccataggggtg	12	9	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34793812	T	T	34793812	3	4	49	1	0	0	0	0	1	0	0	0	7620	1058	37	3	242	3	IFNGR2	21	34793812	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2239006	34793812	13336083	1426	54439											
SETD4	54093	broad.mit.edu	37	chr21	37417781	37417781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacctgaagccgccgacaCctctccctgtggtgccaccc	9	19	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37417781	A	A	37417781	1	1	49	0	1	0	0	0	0	0	0	0	14246	522	18	3		3	SETD4	21	37417781	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	2623969	37417781	10712114	1427	54440											
UBASH3A	53347	broad.mit.edu	37	chr21	43826369	43826369	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgcctctctgacccttttCccaagaatgggcgacgtgac	9	15	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43826369	T	T	43826369	1	4	49	0	1	0	0	0	0	0	0	0	16965	870	30	4		4	UBASH3A	21	43826369	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	6408588	43826369	4303526	1428	54441											
TRAPPC10	7109	broad.mit.edu	37	chr21	45509756	45509756	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatctactccacagtcatcGcactgaccttcagcgtaccc	5	18	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45509756	A	A	45509756	3	1	49	1	0	0	0	0	1	0	0	0	16581	1087	38	4	2882	4	TRAPPC10	21	45509756	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1683387	45509756	2620139	1429	54442											
POTEH	23784	broad.mit.edu	37	chr22	16256758	16256758	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaattaaaaaataacatCtgtatttgtataatgaaaga	5	3	1	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16256758	A	A	16256758	1	1	49	0	1	0	0	0	0	0	0	0	12363	928	32	3		3	POTEH	22	16256758	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08		16256758	35047808	1430	54443											
CECR2	27443	broad.mit.edu	37	chr22	18021558	18021558	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccaggaacatttggccctCtgcgaggatcagatcctgcc	10	13	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18021558	A	A	18021558	3	1	49	1	0	0	0	0	1	0	0	0	3236	912	32	3	1905	3	CECR2	22	18021558	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1764800	18021558	33283008	1431	54444											
USP18	11274	broad.mit.edu	37	chr22	18649936	18649936	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaggaagagacaaagtgatGagtgttcatgtgtgtctaag	13	4	2	3	rs112286677	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18649936	A	A	18649936	1	1	49	0	1	0	0	0	0	0	0	0	17175	1305	45	4		4	USP18	22	18649936	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	628378	18649936	32654630	1432	54445											
CABIN1	23523	broad.mit.edu	37	chr22	24509555	24509555	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaagccaggacagcacagcCgtagcactctcagactctag	10	14	2	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24509555	T	T	24509555	2	4	49	1	0	0	0	0	0	0	0	1	2554	639	23	4		4	CABIN1	22	24509555	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	5859619	24509555	26795011	1433	54446											
SEZ6L	23544	broad.mit.edu	37	chr22	26634371	26634371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccgtgtttatgaagatGgcctcatgacaagatggcat	12	7	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26634371	T	T	26634371	1	4	49	0	1	0	0	0	0	0	0	0	14256	1363	47	2		2	SEZ6L	22	26634371	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	2124816	26634371	24670195	1434	54447											
SLC5A4	6527	broad.mit.edu	37	chr22	32651169	32651169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaccctaaaagccactgGgattccacctacccacagcc	6	19	0	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32651169	T	T	32651169	1	4	49	0	1	0	0	0	0	0	0	0	14781	1247	43	2		2	SLC5A4	22	32651169	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6016798	32651169	18653397	1435	54448											
BPIL2	254240	broad.mit.edu	37	chr22	32829763	32829763	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaaatggttggaaatctgGaaaataaagcccattatgtc	8	6	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32829763	T	T	32829763	1	4	49	0	1	0	0	0	0	0	0	0	1501	1189	41	3		3	BPIL2	22	32829763	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	178594	32829763	18474803	1436	54449											
LARGE	9215	broad.mit.edu	37	chr22	34007773	34007773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgttgaaaggtaatcccCagcgttgaaggtggagcctg	13	8	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34007773	A	A	34007773	1	1	49	0	1	0	0	0	0	0	0	0	8699	609	21	2		2	LARGE	22	34007773	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1178010	34007773	17296793	1437	54450											
GRAP2	9402	broad.mit.edu	37	chr22	40370858	40370858	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaataaatccgatcacAtcactccccttcccactgga	4	14	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40370858	T	T	40370858	1	4	49	0	1	0	0	0	0	0	0	0	6820	232	8	5		5	GRAP2	22	40370858	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	6363085	40370858	10933708	1438	54451											
SULT4A1	25830	broad.mit.edu	37	chr22	44222020	44222020	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaaacaagagaactgctgGggccacttgctgtccggcca	12	13	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44222020	A	A	44222020	1	1	49	0	1	0	0	0	0	0	0	0	15501	1247	43	4		4	SULT4A1	22	44222020	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	3851162	44222020	7082546	1439	54452											
DHRSX	207063	broad.mit.edu	37	chrX	2300728	2300728	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatcatcaccatcaccaTcatcaccatcatcaccatca	0	18	9	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2300728	C	C	2300728	1	2	49	0	1	0	0	0	0	0	0	0	4539	1450	50	5		5	DHRSX	23	2300728	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08		2300728	152969832	1440	54453											
EGFL6	25975	broad.mit.edu	37	chrX	13609107	13609107	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaggtaagctagctaaggcTcaatttcctcctctgcaacc	7	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13609107	A	A	13609107	1	1	49	0	1	0	0	0	0	0	0	0	5003	1566	54	5		5	EGFL6	23	13609107	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	11308379	13609107	141661453	1441	54454											
CNKSR2	22866	broad.mit.edu	37	chrX	21609190	21609190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttgcaaagatcttggcCgtggtgactgtgagggctgg	15	7	2	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21609190	A	A	21609190	3	1	49	1	0	0	0	0	1	0	0	0	3639	652	23	1	1766	1	CNKSR2	23	21609190	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8000083	21609190	133661370	1442	54455											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998043	27998043	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatgaactggatgatctggGaggatgatttctcccagaag	12	8	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27998043	A	A	27998043	3	1	49	1	0	0	0	0	1	0	0	0	4310	1174	41	4	397	4	DCAF8L1	23	27998043	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6388853	27998043	127272517	1443	54456											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29417342	29417342	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgcttataagagaagtcaGagaagatgacattggaaatt	10	4	2	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29417342	T	T	29417342	3	4	49	1	0	0	0	0	1	0	0	0	7731	942	33	3	634	3	IL1RAPL1	23	29417342	Missense_Mutation	SNP	G	TCGA-17-Z016-01A-01W-0746-08	1419299	29417342	125853218	1444	54457											
DMD	1756	broad.mit.edu	37	chrX	31165492	31165492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcggcctttgtgttgaCgcagtagcttggcctcagca	13	12	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31165492	A	A	31165492	3	1	49	1	0	0	0	0	1	0	0	0	4620	536	19	3	466	3	DMD	23	31165492	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1748150	31165492	124105068	1445	54458											
DMD	1756	broad.mit.edu	37	chrX	32862886	32862886	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcatccagaccttgtccAgggtactacttacattattg	7	11	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32862886	C	C	32862886	1	2	49	0	1	0	0	0	0	0	0	0	4620	203	7	5		5	DMD	23	32862886	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	1697394	32862886	122407674	1446	54459											
CXorf22	170063	broad.mit.edu	37	chrX	35985708	35985708	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaattaaaaataccatcTataaacttatattcaattct	1	6	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35985708	A	A	35985708	1	1	49	0	1	0	0	0	0	0	0	0	4135	1537	53	5		5	CXorf22	23	35985708	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3122822	35985708	119284852	1447	54460											
SHROOM4	57477	broad.mit.edu	37	chrX	50428441	50428441	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctatatccaggagagaggTgaaacctttggaagtggata	12	6	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50428441	A	A	50428441	1	1	49	0	1	0	0	0	0	0	0	0	14409	1711	59	5		5	SHROOM4	23	50428441	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	14442733	50428441	104842119	1448	54461											
PHF8	23133	broad.mit.edu	37	chrX	53989451	53989451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacacctactccagctccTgcccttcccctacaaatgta	4	17	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53989451	A	A	53989451	1	1	49	0	1	0	0	0	0	0	0	0	11935	1595	55	5		5	PHF8	23	53989451	Intron	SNP	T	TCGA-17-Z016-01A-01W-0746-08	3561010	53989451	101281109	1449	54462											
DLG3	1741	broad.mit.edu	37	chrX	69669042	69669042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggaggggatgggtttccCaaaatgatcagcagaggctg	17	6	1	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69669042	A	A	69669042	1	1	49	0	1	0	0	0	0	0	0	0	4596	609	21	2		2	DLG3	23	69669042	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	15679591	69669042	85601518	1450	54463											
DLG3	1741	broad.mit.edu	37	chrX	69722000	69722000	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagtaataattttgttttcCtcttcactttagccattgta	4	8	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69722000	G	G	69722000	1	3	49	0	1	0	0	0	0	0	0	0	4596	696	24	4		4	DLG3	23	69722000	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	52958	69722000	85548560	1451	54464											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913915	77913915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgctaagtcctccacCatcttttgaggaaatgggta	11	9	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77913915	A	A	77913915	3	1	49	1	0	0	0	0	1	0	0	0	17717	594	21	2	1428	2	ZCCHC5	23	77913915	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8191915	77913915	77356645	1452	54465											
PCDH11X	27328	broad.mit.edu	37	chrX	91642709	91642709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagatcatatctgaaaccCtgtaattttcattctccctt	3	11	5	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91642709	A	A	91642709	1	1	49	0	1	0	0	0	0	0	0	0	11602	696	24	2		2	PCDH11X	23	91642709	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	13728794	91642709	63627851	1453	54466											
PCDH11X	27328	broad.mit.edu	37	chrX	91714785	91714785	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgtctatgcaggcgccggGggctctggttcccggatctc	15	13	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91714785	A	A	91714785	1	1	49	0	1	0	0	0	0	0	0	0	11602	1247	43	4		4	PCDH11X	23	91714785	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	72076	91714785	63555775	1454	54467											
FAM133A	286499	broad.mit.edu	37	chrX	92964468	92964468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaatcctatagcaatggCcagatggagaggcccaactc	10	10	0	3			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92964468	A	A	92964468	3	1	49	1	0	0	0	0	1	0	0	0	5489	739	26	3	52	3	FAM133A	23	92964468	Missense_Mutation	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1249683	92964468	62306092	1455	54468											
ARMCX1	51309	broad.mit.edu	37	chrX	100807996	100807997	+	Frame_Shift_Ins	INS	-	T	T													tactgtgtatacagactggcINSttggggaagagacgagaacg							TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100807997	T	T	100807996	7	5	49	1	0	1	1	0	0	0	0	0	963	797	28	0	85	0	ARMCX1	23	100807996	Frame_Shift_Ins	INS	-	TCGA-17-Z016-01A-01W-0746-08	7843528	100807996	54462564	1456	54469											
GUCY2F	2986	broad.mit.edu	37	chrX	108623770	108623770	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcgccctcttctcttccCtcttaatgtctcctcctcat	5	17	5	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108623770	T	T	108623770	1	4	49	0	1	0	0	0	0	0	0	0	6963	696	24	4		4	GUCY2F	23	108623770	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7815774	108623770	46646790	1457	54470											
GUCY2F	2986	broad.mit.edu	37	chrX	108712928	108712928	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcccaagtctcatcttctCtcaggattctttcctatctg	4	13	6	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108712928	A	A	108712928	1	1	49	0	1	0	0	0	0	0	0	0	6963	928	32	3		3	GUCY2F	23	108712928	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	89158	108712928	46557632	1458	54471											
DCX	1641	broad.mit.edu	37	chrX	110655070	110655070	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcagtggtaagagaccCcacctcctcaaggcaagcag	10	14	1	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110655070	T	T	110655070	1	4	49	0	1	0	0	0	0	0	0	0	4351	638	22	4		4	DCX	23	110655070	5'Flank	SNP	C	TCGA-17-Z016-01A-01W-0746-08	1942142	110655070	44615490	1459	54472											
TRPC5	7224	broad.mit.edu	37	chrX	111312991	111312991	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttagccctgtaactttaccCctggagtctcaagggagcca	10	12	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111312991	G	G	111312991	1	3	49	0	1	0	0	0	0	0	0	0	16707	638	22	4		4	TRPC5	23	111312991	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	657921	111312991	43957569	1460	54473											
ZCCHC16	340595	broad.mit.edu	37	chrX	111392649	111392649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttacagttttagatagaCcagagaagggatcactgaga	11	5	1	4			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111392649	A	A	111392649	1	1	49	0	1	0	0	0	0	0	0	0	17710	522	18	3		3	ZCCHC16	23	111392649	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	79658	111392649	43877911	1461	54474											
ZCCHC16	340595	broad.mit.edu	37	chrX	111392781	111392781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaggagaatgactggtgCatgtacagggtagcaaaggg	16	5	0	2			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111392781	A	A	111392781	1	1	49	0	1	0	0	0	0	0	0	0	17710	725	25	3		3	ZCCHC16	23	111392781	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	132	111392781	43877779	1462	54475											
NKRF	55922	broad.mit.edu	37	chrX	118723942	118723942	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attacttcactctctagaatCactttgcatttccagcggag	6	11	3	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118723942	A	A	118723942	2	1	49	1	0	0	0	0	0	0	0	1	10542	813	29	3		3	NKRF	23	118723942	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	7331161	118723942	36546618	1463	54476											
BCORL1	63035	broad.mit.edu	37	chrX	129148380	129148380	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagcctgcacccgatggggtCcctgggcctttggcagatac	13	14	0	1			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129148380	G	G	129148380	2	3	49	1	0	0	0	0	0	0	0	1	1392	842	30	4		4	BCORL1	23	129148380	Silent	SNP	C	TCGA-17-Z016-01A-01W-0746-08	10424438	129148380	26122180	1464	54477											
FGF13	2258	broad.mit.edu	37	chrX	137977823	137977823	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatttcacacgggtatatatCcaaaggaaataaaattagta	6	5	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137977823	A	A	137977823	1	1	49	0	1	0	0	0	0	0	0	0	5899	870	30	3		3	FGF13	23	137977823	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	8829443	137977823	17292737	1465	54478											
SOX3	6658	broad.mit.edu	37	chrX	139586819	139586819	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggccgtttcacacggtccTggtctgtacccccgccacct	10	17	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139586819	C	C	139586819	3	2	49	1	0	0	0	0	1	0	0	0	15065	1580	55	5	937	5	SOX3	23	139586819	Missense_Mutation	SNP	T	TCGA-17-Z016-01A-01W-0746-08	1608996	139586819	15683741	1466	54479											
SPANXN3	139067	broad.mit.edu	37	chrX	142598784	142598784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccttccaaagtctttcCcttgcaggaggttgcaagga	11	10	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142598784	T	T	142598784	1	4	49	0	1	0	0	0	0	0	0	0	15108	638	22	4		4	SPANXN3	23	142598784	Intron	SNP	C	TCGA-17-Z016-01A-01W-0746-08	3011965	142598784	12671776	1467	54480											
TGIF2LY	90655	broad.mit.edu	37	chrY	3448045	3448045	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacccaagtagtcagtccCttgtgtactgtggtaaacct	8	10	1	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3448045	A	A	3448045	1	1	49	0	1	0	0	0	0	0	0	0	15951	696	24	2		2	TGIF2LY	24	3448045	3'UTR	SNP	C	TCGA-17-Z016-01A-01W-0746-08		3448045	55925521	1468	54481											
TBL1Y	90665	broad.mit.edu	37	chrY	6812035	6812035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgtgtcactcaccctgcAccatgctgggccacatcact	8	15	3	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6812035	G	G	6812035	1	3	49	0	1	0	0	0	0	0	0	0	15763	174	6	5		5	TBL1Y	24	6812035	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	3363990	6812035	52561531	1469	54482											
TSPY1	7258	broad.mit.edu	37	chrY	9307492	9307492	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacgtgctttattctcttAatggaaataaccagtctgcg	7	10	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9307492	C	C	9307492	1	2	49	0	1	0	0	0	0	0	0	0	16782	377	13	5		5	TSPY1	24	9307492	Intron	SNP	A	TCGA-17-Z016-01A-01W-0746-08	2495457	9307492	50066074	1470	54483											
UTY	7404	broad.mit.edu	37	chrY	15471024	15471024	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctctgcggggattggtaGgctccatgcctcctcaatac	11	12	2	0			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15471024	A	A	15471024	1	1	49	0	1	0	0	0	0	0	0	0	17234	1015	35	4		4	UTY	24	15471024	Intron	SNP	G	TCGA-17-Z016-01A-01W-0746-08	6163532	15471024	43902542	1471	54484											
KIF1B	23095	broad.mit.edu	37	chr1	10394830	10394830	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtaatatacagacacatActttggagaaagcctttatt	7	6	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10394830	T	T	10394830	1	4	50	0	1	0	0	0	0	0	0	0	8354	406	14	5		5	KIF1B	1	10394830	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08		10394830	238855791	1	54485											
PRAMEF2	65122	broad.mit.edu	37	chr1	12920987	12920987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaacaaacttgtgtttgGttgaagcaggtattttcctt	11	5	0	1	rs72472701	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12920987	T	T	12920987	1	4	50	0	1	0	0	0	0	0	0	0	12537	1276	44	3		3	PRAMEF2	1	12920987	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2526157	12920987	236329634	2	54486											
IGSF21	84966	broad.mit.edu	37	chr1	18692124	18692124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccacagatcgacaacgaGgccctcttcagctgcgaggt	10	14	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18692124	T	T	18692124	3	4	50	1	0	0	0	0	1	0	0	0	7669	991	35	2	970	2	IGSF21	1	18692124	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5771137	18692124	230558497	3	54487											
AKR7A2	8574	broad.mit.edu	37	chr1	19633560	19633560	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaggctgtttcccgtcctTgtcctcatacttgtacttgc	7	14	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19633560	C	C	19633560	3	2	50	1	0	0	0	0	1	0	0	0	475	1821	63	5	367	5	AKR7A2	1	19633560	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	941436	19633560	229617061	4	54488											
SYF2	25949	broad.mit.edu	37	chr1	25554002	25554002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaaccgatgatactggCgtaactgggcagcagcataa	12	9	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25554002	A	A	25554002	3	1	50	1	0	0	0	0	1	0	0	0	15556	768	27	3	345	3	SYF2	1	25554002	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	5920442	25554002	223696619	5	54489											
RHD	6007	broad.mit.edu	37	chr1	25627384	25627384	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaaggactatcagggctTgccccgggcagaggatgccg	14	13	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25627384	G	G	25627384	1	3	50	0	1	0	0	0	0	0	0	0	13436	1827	63	5		5	RHD	1	25627384	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	73382	25627384	223623237	6	54490											
ZDHHC18	84243	broad.mit.edu	37	chr1	27176877	27176877	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacgcgtttattctctccctCtcattcctgacggccttcat	5	15	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27176877	G	G	27176877	2	3	50	1	0	0	0	0	0	0	0	1	17734	900	32	4		4	ZDHHC18	1	27176877	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1549493	27176877	222073744	7	54491											
CSMD2	114784	broad.mit.edu	37	chr1	34383799	34383799	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtcccccagctcagccagGatggtccatgtgcagtcggc	13	14	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34383799	T	T	34383799	2	4	50	1	0	0	0	0	0	0	0	1	3979	1164	41	3		3	CSMD2	1	34383799	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7206922	34383799	214866822	8	54492											
THRAP3	9967	broad.mit.edu	37	chr1	36754665	36754665	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtttttataaataggtatCtagaagagcagaagacagag	11	3	1	5			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36754665	G	G	36754665	3	3	50	1	0	0	0	0	1	0	0	0	15997	912	32	4	1055	4	THRAP3	1	36754665	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2370866	36754665	212495956	9	54493											
GRIK3	2899	broad.mit.edu	37	chr1	37389673	37389673	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggaggatgtcagacaCatttcagagacagcggtggg	17	7	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37389673	G	G	37389673	1	3	50	0	1	0	0	0	0	0	0	0	6841	493	17	4		4	GRIK3	1	37389673	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	635008	37389673	211860948	10	54494											
RIMKLA	284716	broad.mit.edu	37	chr1	42880128	42880128	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgacttctcagttgtcacCtttacatcactgtgctttcc	5	13	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42880128	G	G	42880128	1	3	50	0	1	0	0	0	0	0	0	0	13476	696	24	4		4	RIMKLA	1	42880128	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	5490455	42880128	206370493	11	54495											
IPP	3652	broad.mit.edu	37	chr1	46179937	46179938	+	Nonsense_Mutation	DNP	TC	CA	CA													cctcttcaaaggaatattttTctacagtatgaagagcatct							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	46179938	CA	CA	46179937	4	2	50	1	0	0	0	0	0	1	0	0	7870	1783	62	5	353	5	IPP	1	46179937	Nonsense_Mutation	DNP	TC	TCGA-17-Z017-01A-01W-0746-08	3299809	46179937	203070684	12	54496											
RAD54L	8438	broad.mit.edu	37	chr1	46736684	46736684	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttggtctgtttatcagcctGctgaggaagcttttctctga	10	8	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46736684	A	A	46736684	1	1	50	0	1	0	0	0	0	0	0	0	13101	1334	46	4		4	RAD54L	1	46736684	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	556747	46736684	202513937	13	54497											
AGBL4	84871	broad.mit.edu	37	chr1	49019665	49019665	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcccaagtctgctgcagcGgtcaaagaacagtgcagcaa	12	11	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49019665	A	A	49019665	1	1	50	0	1	0	0	0	0	0	0	0	377	1131	39	4		4	AGBL4	1	49019665	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2282981	49019665	200230956	14	54498											
TMEM59	9528	broad.mit.edu	37	chr1	54511290	54511290	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactaaaataggatcaagtgGgtgataaacacttcaagcaa	8	7	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54511290	A	A	54511290	1	1	50	0	1	0	0	0	0	0	0	0	16308	1247	43	4		4	TMEM59	1	54511290	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5491625	54511290	194739331	15	54499											
DAB1	1600	broad.mit.edu	37	chr1	58114306	58114306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccagtcctgttgttccCcaaggtcccataacaaatag	6	13	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58114306	A	A	58114306	1	1	50	0	1	0	0	0	0	0	0	0	4250	638	22	2		2	DAB1	1	58114306	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3603016	58114306	191136315	16	54500											
JAK1	3716	broad.mit.edu	37	chr1	65310713	65310713	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgctgccaatcatctgtgtGacttaggcacatcacaggtg	10	11	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65310713	A	A	65310713	1	1	50	0	1	0	0	0	0	0	0	0	8007	1305	45	4		4	JAK1	1	65310713	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7196407	65310713	183939908	17	54501											
IL12RB2	3595	broad.mit.edu	37	chr1	67792502	67792502	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgggaaagaggacgagAcacccacttatacactgagt	10	11	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67792502	G	G	67792502	3	3	50	1	0	0	0	0	1	0	0	0	7697	275	10	5	459	5	IL12RB2	1	67792502	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	2481789	67792502	181458119	18	54502											
RPE65	6121	broad.mit.edu	37	chr1	68910071	68910071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagacagaggcaatcagtgCagtccatttggagcttggaa	12	7	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68910071	A	A	68910071	1	1	50	0	1	0	0	0	0	0	0	0	13656	725	25	3		3	RPE65	1	68910071	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1117569	68910071	180340550	19	54503											
SLC44A5	204962	broad.mit.edu	37	chr1	76069438	76069438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggagcattttttcatGtttttttttttttttttgct	7	3	1	0	rs57844833		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76069438	T	T	76069438	1	4	50	0	1	0	0	0	0	0	0	0	14753	1392	48	3		3	SLC44A5	1	76069438	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7159367	76069438	173181183	20	54504											
LPHN2	23266	broad.mit.edu	37	chr1	82188519	82188519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggctcttttccaggtgGctttcctgggggaaatgcct	12	10	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82188519	T	T	82188519	1	4	50	0	1	0	0	0	0	0	0	0	9003	1218	42	3		3	LPHN2	1	82188519	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	6119081	82188519	167062102	21	54505											
LPHN2	23266	broad.mit.edu	37	chr1	82372971	82372971	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatccaaattagaaaaaTtattacagttattccaaagc	4	6	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82372971	A	A	82372971	1	1	50	0	1	0	0	0	0	0	0	0	9003	1508	52	5		5	LPHN2	1	82372971	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	184452	82372971	166877650	22	54506											
LPHN2	23266	broad.mit.edu	37	chr1	82436122	82436122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgaaagtgaatattcaaGgaaaaaatattactatgttg	7	2	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82436122	T	T	82436122	3	4	50	1	0	0	0	0	1	0	0	0	9003	1000	35	2	2857	2	LPHN2	1	82436122	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	63151	82436122	166814499	23	54507											
DNASE2B	58511	broad.mit.edu	37	chr1	84876500	84876500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttttctgatttatcttTgttaaatgtgtctttggtag	8	3	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84876500	C	C	84876500	1	2	50	0	1	0	0	0	0	0	0	0	4705	1827	63	5		5	DNASE2B	1	84876500	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	2440378	84876500	164374121	24	54508											
COL24A1	255631	broad.mit.edu	37	chr1	86304322	86304322	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttggtcccccactggaccCtacagagaccacacacaaaa	6	17	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86304322	T	T	86304322	5	4	50	1	0	0	0	0	0	0	1	0	3715	695	24	4	1589	4	COL24A1	1	86304322	Splice_Site	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1427822	86304322	162946299	25	54509											
CLCA4	22802	broad.mit.edu	37	chr1	87041215	87041215	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacctgttcttggagccaaTgtgactgctttcattgaatc	9	9	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87041215	A	A	87041215	3	1	50	1	0	0	0	0	1	0	0	0	3490	1461	51	5	1926	5	CLCA4	1	87041215	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	736893	87041215	162209406	26	54510											
COL11A1	1301	broad.mit.edu	37	chr1	103400166	103400166	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaatcattacgatatgAgtcattaaaaaatgtggcca	7	5	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103400166	T	T	103400166	1	4	50	0	1	0	0	0	0	0	0	0	3699	319	11	5		5	COL11A1	1	103400166	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	16358951	103400166	145850455	27	54511											
KCNA2	3737	broad.mit.edu	37	chr1	111146839	111146839	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtcttcattctcatccCggaagatgggcaatgtttcc	9	11	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111146839	G	G	111146839	3	3	50	1	0	0	0	0	1	0	0	0	8073	652	23	4	937	4	KCNA2	1	111146839	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7746673	111146839	138103782	28	54512											
MAGI3	260425	broad.mit.edu	37	chr1	114226575	114226575	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgataactccagggccctGgaaggttccaagtggaaata	11	9	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114226575	A	A	114226575	4	1	50	1	0	0	0	0	0	1	0	0	9284	1357	47	4	4521	4	MAGI3	1	114226575	Nonsense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3079736	114226575	135024046	29	54513											
TRIM33	51592	broad.mit.edu	37	chr1	114952806	114952807	+	Missense_Mutation	DNP	CT	AA	AA													gtaatacccgtttgctttacCtgatgatcccggagaaaggg							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	114952807	AA	AA	114952806	3	1	50	1	0	0	0	0	1	0	0	0	16631	695	24	2	1225	2	TRIM33	1	114952806	Missense_Mutation	DNP	CT	TCGA-17-Z017-01A-01W-0746-08	726231	114952806	134297815	30	54514											
NHLH2	4808	broad.mit.edu	37	chr1	116380682	116380682	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccgggggcagcgtgggCagcaatttgcggagctcggc	18	10	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116380682	A	A	116380682	2	1	50	1	0	0	0	0	0	0	0	1	10499	697	25	3		3	NHLH2	1	116380682	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1427876	116380682	132869939	31	54515											
MAN1A2	10905	broad.mit.edu	37	chr1	118039517	118039517	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatgtttgcactaggagcaGatggttccagagcagataaa	12	6	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118039517	A	A	118039517	3	1	50	1	0	0	0	0	1	0	0	0	9303	942	33	4	1455	4	MAN1A2	1	118039517	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1658835	118039517	131211104	32	54516											
SPAG17	200162	broad.mit.edu	37	chr1	118565977	118565977	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgtttctgatttctgctgaGaaatagagtccatcaaatct	7	8	4	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118565977	T	T	118565977	3	4	50	1	0	0	0	0	1	0	0	0	15095	942	33	3	2736	3	SPAG17	1	118565977	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	526460	118565977	130684644	33	54517											
NBPF9	400818	broad.mit.edu	37	chr1	145085808	145085809	+	Intron	INS	-	T	T													aacatataaatgcatgtgtcINSttttggtataatgatttatt					rs146743627		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145085809	T	T	145085808	6	5	50	0	1	1	1	0	0	0	0	0	10294	928	32	0		0	NBPF9	1	145085808	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	26519831	145085808	104164813	34	54518											
NBPF9	400818	broad.mit.edu	37	chr1	145126177	145126177	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatactccactttttcttccGtctttctcaaactcattttt	1	12	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145126177	A	A	145126177	1	1	50	0	1	0	0	0	0	0	0	0	10294	1160	40	4		4	NBPF9	1	145126177	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	40369	145126177	104124444	35	54519											
FLG	2312	broad.mit.edu	37	chr1	152285700	152285700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccatgggaggcatcagaCcttccctgggatgtggtgtg	15	10	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152285700	A	A	152285700	3	1	50	1	0	0	0	0	1	0	0	0	5979	506	18	3	10527	3	FLG	1	152285700	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7159523	152285700	96964921	36	54520											
IQGAP3	128239	broad.mit.edu	37	chr1	156503601	156503601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgggcagctccccaagatCctccaggagctcatgcaggg	14	13	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156503601	A	A	156503601	3	1	50	1	0	0	0	0	1	0	0	0	7886	855	30	3	987	3	IQGAP3	1	156503601	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4217901	156503601	92747020	37	54521											
SH2D2A	9047	broad.mit.edu	37	chr1	156785513	156785513	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtcactgacacagagtgcAgatgcctgcttctgggactc	12	11	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156785513	T	T	156785513	1	4	50	0	1	0	0	0	0	0	0	0	14345	203	7	5		5	SH2D2A	1	156785513	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	281912	156785513	92465108	38	54522											
CD5L	922	broad.mit.edu	37	chr1	157811458	157811458	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaacaggtgcagagatActcaccaaggatcaaggaga	10	9	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157811458	T	T	157811458	1	4	50	0	1	0	0	0	0	0	0	0	3057	406	14	5		5	CD5L	1	157811458	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1025945	157811458	91439163	39	54523											
CD1B	910	broad.mit.edu	37	chr1	158300026	158300026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggataaagttatttggtGtaaaatgatgatgagctaaa	12	1	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158300026	T	T	158300026	1	4	50	0	1	0	0	0	0	0	0	0	3005	1392	48	3		3	CD1B	1	158300026	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	488568	158300026	90950595	40	54524											
SPTA1	6708	broad.mit.edu	37	chr1	158613238	158613238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaataaaggaaaaggaaagaGcccagatgcttggagattag	12	4	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158613238	A	A	158613238	1	1	50	0	1	0	0	0	0	0	0	0	15234	986	34	4		4	SPTA1	1	158613238	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	313212	158613238	90637383	41	54525											
OR6K2	81448	broad.mit.edu	37	chr1	158669686	158669686	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgagagtcacactgccaaAgaagagcgaaaagacaatga	10	8	1	5			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158669686	T	T	158669686	3	4	50	1	0	0	0	0	1	0	0	0	11296	72	3	5	221	5	OR6K2	1	158669686	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	56448	158669686	90580935	42	54526											
MNDA	4332	broad.mit.edu	37	chr1	158815369	158815369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttattttcttgtgtctgccCaacacagaatcaggaaaccc	6	11	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158815369	A	A	158815369	1	1	50	0	1	0	0	0	0	0	0	0	9770	609	21	2		2	MNDA	1	158815369	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	145683	158815369	90435252	43	54527											
F11R	50848	broad.mit.edu	37	chr1	160970066	160970066	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggggaaccatcttgttctGagcatgtcagcactgcccgg	13	11	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160970066	A	A	160970066	3	1	50	1	0	0	0	0	1	0	0	0	5381	1294	45	4	462	4	F11R	1	160970066	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2154697	160970066	88280555	44	54528											
FCGR2C	9103	broad.mit.edu	37	chr1	161559303	161559303	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagattcagggcctctcagGctcttgggcttcctcttcct	10	13	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161559303	A	A	161559303	1	1	50	0	1	0	0	0	0	0	0	0	5840	1218	42	4		4	FCGR2C	1	161559303	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	589237	161559303	87691318	45	54529											
DDR2	4921	broad.mit.edu	37	chr1	162688969	162688969	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactcagctatatgctagaaGaccagcagaatgtttaaacc	7	9	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162688969	C	C	162688969	1	2	50	0	1	0	0	0	0	0	0	0	4370	957	33	4		4	DDR2	1	162688969	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1129666	162688969	86561652	46	54530											
TMCO1	54499	broad.mit.edu	37	chr1	165788712	165788712	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccaaagagctgagacagaaGtacaatgtgcaatccatgcc	9	10	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165788712	C	C	165788712	1	2	50	0	1	0	0	0	0	0	0	0	16118	1044	36	4		4	TMCO1	1	165788712	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3099743	165788712	83461909	47	54531											
MAEL	84944	broad.mit.edu	37	chr1	166962128	166962128	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacgtgtatggttttttttTttaaatcttgactttatttg	6	3	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166962128	G	G	166962128	1	3	50	0	1	0	0	0	0	0	0	0	9242	1856	64	5		5	MAEL	1	166962128	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1173416	166962128	82288493	48	54532											
GPA33	10223	broad.mit.edu	37	chr1	167058414	167058414	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagcaggctgcccttccctCgagagccccaaggccaggtg	13	16	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167058414	A	A	167058414	1	1	50	0	1	0	0	0	0	0	0	0	6651	899	31	3		3	GPA33	1	167058414	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	96286	167058414	82192207	49	54533											
DUSP27	92235	broad.mit.edu	37	chr1	167096156	167096156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcctggaagctgaaacaCcagaagaaggtgggcagtga	15	8	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167096156	A	A	167096156	3	1	50	1	0	0	0	0	1	0	0	0	4864	506	18	3	1806	3	DUSP27	1	167096156	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	37742	167096156	82154465	50	54534											
C1orf129	80133	broad.mit.edu	37	chr1	170973560	170973560	+	Intron	DEL	C	-	-													gacccagtgaactcccagggCctttctgctgcttcccctac							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170973560	-	-	170973560	6	5	50	0	1	1	0	1	0	0	0	0	2016	754	26	0		0	C1orf129	1	170973560	Intron	DEL	C	TCGA-17-Z017-01A-01W-0746-08	3877404	170973560	78277061	51	54535											
PAPPA2	60676	broad.mit.edu	37	chr1	176526298	176526298	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgtccagaagtgctggcTgagattccccgggaggcgtt	15	11	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176526298	A	A	176526298	2	1	50	1	0	0	0	0	0	0	0	1	11527	1567	55	5		5	PAPPA2	1	176526298	Silent	SNP	T	TCGA-17-Z017-01A-01W-0746-08	5552738	176526298	72724323	52	54536											
ASTN1	460	broad.mit.edu	37	chr1	177133464	177133464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagtgggtgtgtagagcgaGctggagtggggggtgggggc	25	4	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177133464	T	T	177133464	1	4	50	0	1	0	0	0	0	0	0	0	1068	986	34	3		3	ASTN1	1	177133464	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	607166	177133464	72117157	53	54537											
SEC16B	89866	broad.mit.edu	37	chr1	177915690	177915690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggaggaagagaacaagacCcaatcacggagcacacccgt	12	12	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177915690	A	A	177915690	1	1	50	0	1	0	0	0	0	0	0	0	14100	638	22	2		2	SEC16B	1	177915690	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	782226	177915690	71334931	54	54538											
TDRD5	163589	broad.mit.edu	37	chr1	179631373	179631373	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccatctatttactgcaagCcttggtggaaagaatcagta	8	9	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179631373	T	T	179631373	2	4	50	1	0	0	0	0	0	0	0	1	15855	738	26	4		4	TDRD5	1	179631373	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1715683	179631373	69619248	55	54539											
CACNA1E	777	broad.mit.edu	37	chr1	181650344	181650344	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtgattgcctaccactgctCtaagccttctgtgtccttgt	8	13	2	1	rs116778255	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181650344	T	T	181650344	1	4	50	0	1	0	0	0	0	0	0	0	2568	928	32	4		4	CACNA1E	1	181650344	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2018971	181650344	67600277	56	54540											
KIF21B	23046	broad.mit.edu	37	chr1	200956012	200956012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggacttccttctcgtcaGcggggacgtctctgtggctc	13	12	3	0	rs79881792		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200956012	T	T	200956012	3	4	50	1	0	0	0	0	1	0	0	0	8359	962	34	3	1261	3	KIF21B	1	200956012	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	19305668	200956012	48294609	57	54541											
TNNT2	7139	broad.mit.edu	37	chr1	201335967	201335967	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtgcctccccactcaccTgggctttggtttggactcct	10	15	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201335967	C	C	201335967	3	2	50	1	0	0	0	0	1	0	0	0	16454	1594	55	5	707	5	TNNT2	1	201335967	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	379955	201335967	47914654	58	54542											
MAPKAPK2	9261	broad.mit.edu	37	chr1	206906050	206906050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgggccctggaggctgcggCtctggcccactgagccaccg	15	16	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206906050	T	T	206906050	3	4	50	1	0	0	0	0	1	0	0	0	9381	797	28	4	1286	4	MAPKAPK2	1	206906050	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	5570083	206906050	42344571	59	54543											
C4BPA	722	broad.mit.edu	37	chr1	207286344	207286344	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattgagttctttcagcAgaaaaacatcagcgaagcag	8	7	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207286344	C	C	207286344	5	2	50	1	0	0	0	0	0	0	1	0	2272	202	7	5		5	C4BPA	1	207286344	Splice_Site	SNP	A	TCGA-17-Z017-01A-01W-0746-08	380294	207286344	41964277	60	54544											
CD34	947	broad.mit.edu	37	chr1	208072370	208072370	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatagggtttagtgggagatGttgcaaggctagtgctagtg	16	3	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208072370	A	A	208072370	3	1	50	1	0	0	0	0	1	0	0	0	3036	1377	48	4	736	4	CD34	1	208072370	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	786026	208072370	41178251	61	54545											
KCNH1	3756	broad.mit.edu	37	chr1	211263912	211263912	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaattacaaacctttacatGaatcatcctcaattggctgt	5	9	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211263912	T	T	211263912	4	4	50	1	0	0	0	0	0	1	0	0	8101	1294	45	3	2570	3	KCNH1	1	211263912	Nonsense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3191542	211263912	37986709	62	54546											
PTPN14	5784	broad.mit.edu	37	chr1	214576389	214576389	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccttcctcagatgttccTgattagtcacatttcctcaa	4	14	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214576389	C	C	214576389	1	2	50	0	1	0	0	0	0	0	0	0	12889	1595	55	5		5	PTPN14	1	214576389	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	3312477	214576389	34674232	63	54547											
USH2A	7399	broad.mit.edu	37	chr1	216256892	216256892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaaatctcaaagttcattCcaccatgaaacatatatgga	6	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216256892	A	A	216256892	3	1	50	1	0	0	0	0	1	0	0	0	17162	855	30	3	10592	3	USH2A	1	216256892	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1680503	216256892	32993729	64	54548											
KIAA1383	54627	broad.mit.edu	37	chr1	232942878	232942878	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacaactgcctgaagataaGtatttagattcagatgcatc	7	9	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232942878	C	C	232942878	3	2	50	1	0	0	0	0	1	0	0	0	8298	1020	36	4	2111	4	KIAA1383	1	232942878	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	16685986	232942878	16307743	65	54549											
RYR2	6262	broad.mit.edu	37	chr1	237586495	237586495	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaaaaaccttctactcatgGacaaagagaaagctgatgta	7	8	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237586495	C	C	237586495	3	2	50	1	0	0	0	0	1	0	0	0	13880	1174	41	4	998	4	RYR2	1	237586495	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4643617	237586495	11664126	66	54550											
ZP4	57829	broad.mit.edu	37	chr1	238048432	238048432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagttggggaggttcagagCcctggtgagtgtcatggaag	17	5	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238048432	A	A	238048432	1	1	50	0	1	0	0	0	0	0	0	0	18347	754	26	3		3	ZP4	1	238048432	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	461937	238048432	11202189	67	54551											
CEP170	9859	broad.mit.edu	37	chr1	243362479	243362479	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatataatggagtaccacGgggcatagcagaaatatctg	10	9	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243362479	A	A	243362479	3	1	50	1	0	0	0	0	1	0	0	0	3280	1116	39	4	4326	4	CEP170	1	243362479	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5314047	243362479	5888142	68	54552											
SDCCAG8	10806	broad.mit.edu	37	chr1	243449736	243449736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcataaattttattttagtGtgaatattcccttctgccct	4	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243449736	T	T	243449736	1	4	50	0	1	0	0	0	0	0	0	0	14072	1392	48	3		3	SDCCAG8	1	243449736	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	87257	243449736	5800885	69	54553											
OR2L13	284521	broad.mit.edu	37	chr1	248099459	248099459	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcaggtcaaacagctgcaCgtgctccagagagtcttgga	11	11	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248099459	T	T	248099459	1	4	50	0	1	0	0	0	0	0	0	0	11100	551	19	4		4	OR2L13	1	248099459	5'Flank	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4649723	248099459	1151162	70	54554											
OR2T3	343173	broad.mit.edu	37	chr1	248637525	248637525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcactcctgtgctgaacCccctcatttacagtctccgc	5	17	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248637525	A	A	248637525	3	1	50	1	0	0	0	0	1	0	0	0	11117	623	22	2	876	2	OR2T3	1	248637525	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	538066	248637525	613096	71	54555											
RNF144A	9781	broad.mit.edu	37	chr2	7059210	7059210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtaagttggtgtagacGcctgtggagctgtgggagcc	17	6	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7059210	T	T	7059210	1	4	50	0	1	0	0	0	0	0	0	0	13556	1102	38	3		3	RNF144A	2	7059210	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08		7059210	236140163	72	54556											
NOL10	79954	broad.mit.edu	37	chr2	10729579	10729579	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagataatactcctaagccCaatgtcaaacacttaatatg	4	9	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10729579	G	G	10729579	1	3	50	0	1	0	0	0	0	0	0	0	10615	609	21	4		4	NOL10	2	10729579	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3670369	10729579	232469794	73	54557											
ROCK2	9475	broad.mit.edu	37	chr2	11356110	11356110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagtttgcaaaaacataaCagaatgaagcctatttataa	5	6	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11356110	A	A	11356110	1	1	50	0	1	0	0	0	0	0	0	0	13629	493	17	3		3	ROCK2	2	11356110	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	626531	11356110	231843263	74	54558											
ASXL2	55252	broad.mit.edu	37	chr2	26029277	26029277	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgaatatcctatgtaacActcaaaataaaattaattag	3	7	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26029277	G	G	26029277	1	3	50	0	1	0	0	0	0	0	0	0	1071	174	6	5		5	ASXL2	2	26029277	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	14673167	26029277	217170096	75	54559											
NRXN1	9378	broad.mit.edu	37	chr2	50631293	50631293	+	Intron	DEL	T	-	-													tttaggaatattttgtttagTttttttttgtttgttttgtt					rs67474218		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50631293	-	-	50631293	6	5	50	0	1	1	0	1	0	0	0	0	10760	1740	60	0		0	NRXN1	2	50631293	Intron	DEL	T	TCGA-17-Z017-01A-01W-0746-08	24602016	50631293	192568080	76	54560											
TMEM17	200728	broad.mit.edu	37	chr2	62745024	62745024	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccacttgatcatggtggAtaagctttttgatgtgctgc	11	8	1	2	rs137898431	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62745024	G	G	62745024	1	3	50	0	1	0	0	0	0	0	0	0	16208	348	12	5		5	TMEM17	2	62745024	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	12113731	62745024	180454349	77	54561											
CD207	50489	broad.mit.edu	37	chr2	71062787	71062788	+	Intron	INS	-	T	T													aaggagcagcaaagggcaggINStttgcacacagaacacggag							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71062788	T	T	71062787	6	5	50	0	1	1	1	0	0	0	0	0	3013	1276	44	0		0	CD207	2	71062787	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	8317763	71062787	172136586	78	54562											
C2orf78	388960	broad.mit.edu	37	chr2	74043608	74043608	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgtggcttaccctgctcGacctgattctactaactcag	8	13	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74043608	A	A	74043608	3	1	50	1	0	0	0	0	1	0	0	0	2217	1058	37	4	2268	4	C2orf78	2	74043608	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2980821	74043608	169155765	79	54563											
STAMBP	10617	broad.mit.edu	37	chr2	74082519	74082519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaaacttgactgtgaaaGgaaggagggagagaaggtac	15	4	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74082519	T	T	74082519	1	4	50	0	1	0	0	0	0	0	0	0	15368	1015	35	2		2	STAMBP	2	74082519	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	38911	74082519	169116854	80	54564											
REG3G	130120	broad.mit.edu	37	chr2	79254794	79254794	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggaaaagattccagtgcaGaggactctagggcagcatct	12	8	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79254794	T	T	79254794	1	4	50	0	1	0	0	0	0	0	0	0	13321	957	33	3		3	REG3G	2	79254794	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5172275	79254794	163944579	81	54565			1	49		3	3	610	N	G_A	6.035619e-05
REG3G	130120	broad.mit.edu	37	chr2	79255223	79255223	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcattctcctggattgagaAactggtgaagatgagagaga	12	6	2	5			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79255223	G	G	79255223	1	3	50	0	1	0	0	0	0	0	0	0	13321	29	1	5		5	REG3G	2	79255223	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	429	79255223	163944150	82	54566			1	49		3	3	610	N	G_A	6.035619e-05
REG3G	130120	broad.mit.edu	37	chr2	79255403	79255403	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaagttcaaggactagGgcaggtgggaagtcagcagc	15	8	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79255403	T	T	79255403	1	4	50	0	1	0	0	0	0	0	0	0	13321	1247	43	2		2	REG3G	2	79255403	3'UTR	SNP	G	TCGA-17-Z017-01A-01W-0746-08	180	79255403	163943970	83	54567			1	49		3	3	610	N	G_A	6.035619e-05
RMND5A	64795	broad.mit.edu	37	chr2	87106025	87106025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttcaaattttggggggGttttgttggagaacattttt	13	2	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87106025	T	T	87106025	1	4	50	0	1	0	0	0	0	0	0	0	13508	1276	44	3		3	RMND5A	2	87106025	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7850622	87106025	156093348	84	54568											
RMND5A	64795	broad.mit.edu	37	chr2	87569617	87569617	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgggcactgcgggtcctcGggtggggactctggagttca	18	10	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87569617	C	C	87569617	1	2	50	0	1	0	0	0	0	0	0	0	13508	1131	39	4		4	RMND5A	2	87569617	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	463592	87569617	155629756	85	54569											
TMEM131	23505	broad.mit.edu	37	chr2	98475769	98475769	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagcagagaaacttacccTattttgaaaaaatgatgcat	6	6	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98475769	C	C	98475769	3	2	50	1	0	0	0	0	1	0	0	0	16167	1521	53	5	5318	5	TMEM131	2	98475769	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	10906152	98475769	144723604	86	54570											
AFF3	3899	broad.mit.edu	37	chr2	100453903	100453903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatttagagtctatgtccCacagattgataagactgttt	7	7	2	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100453903	A	A	100453903	1	1	50	0	1	0	0	0	0	0	0	0	358	609	21	2		2	AFF3	2	100453903	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1978134	100453903	142745470	87	54571											
PDCL3	79031	broad.mit.edu	37	chr2	101183005	101183005	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaatgacatcttacgcaAaaagggtatcttacccccca	7	11	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101183005	G	G	101183005	3	3	50	1	0	0	0	0	1	0	0	0	11722	14	1	5	53	5	PDCL3	2	101183005	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	729102	101183005	142016368	88	54572											
IL1RL1	9173	broad.mit.edu	37	chr2	102964714	102964714	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggattttcttaaaggccAttttccatcctgctatgtaa	6	8	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102964714	G	G	102964714	1	3	50	0	1	0	0	0	0	0	0	0	7733	232	8	5		5	IL1RL1	2	102964714	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1781709	102964714	140234659	89	54573											
IL1F5	26525	broad.mit.edu	37	chr2	113819152	113819153	+	Intron	INS	-	AT	AT													gcaggcatatatgtgtgagcINSatgtgtgcatgcatgtatct					rs142039683	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	113819153	AT	AT	113819152	6	5	50	0	1	1	1	0	0	0	0	0	7723	725	25	0		0	IL1F5	2	113819152	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	10854438	113819152	129380221	90	54574											
WDSUB1	151525	broad.mit.edu	37	chr2	160121803	160121804	+	Intron	DNP	AC	CA	CA													tctctaaagcaagcacacacAccacacacacacacacacac					rs138412983	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	160121804	CA	CA	160121803	1	2	50	0	1	0	0	0	0	0	0	0	17468	174	6	5		5	WDSUB1	2	160121803	Intron	DNP	AC	TCGA-17-Z017-01A-01W-0746-08	46302651	160121803	83077570	91	54575											
LY75	4065	broad.mit.edu	37	chr2	160691982	160691982	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaattaaaagatctgaaaTtcacatacttcctgaatagt	5	6	2	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160691982	A	A	160691982	1	1	50	0	1	0	0	0	0	0	0	0	9187	1508	52	5		5	LY75	2	160691982	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	570179	160691982	82507391	92	54576											
SCN3A	6328	broad.mit.edu	37	chr2	165971985	165971985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagtaaaacaagcttccGgtttaaggtcttcttcgggt	9	9	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165971985	T	T	165971985	3	4	50	1	0	0	0	0	1	0	0	0	14031	1116	39	1	2548	1	SCN3A	2	165971985	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5280003	165971985	77227388	93	54577											
XIRP2	129446	broad.mit.edu	37	chr2	168103802	168103802	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacagatattcatcaggTtgctgtccagaggaacaaaa	9	7	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168103802	C	C	168103802	3	2	50	1	0	0	0	0	1	0	0	0	17557	1725	60	5	5930	5	XIRP2	2	168103802	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	2131817	168103802	75095571	94	54578											
UBR3	130507	broad.mit.edu	37	chr2	170938409	170938409	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctacgaatttatttttcaAcaataagctttaacttaatt	3	7	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170938409	G	G	170938409	1	3	50	0	1	0	0	0	0	0	0	0	17029	58	2	5		5	UBR3	2	170938409	3'UTR	SNP	A	TCGA-17-Z017-01A-01W-0746-08	2834607	170938409	72260964	95	54579											
MYO3B	140469	broad.mit.edu	37	chr2	171034992	171034992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgccttttgtctgggtgGttaaatttctcttgaaggag	11	5	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171034992	T	T	171034992	1	4	50	0	1	0	0	0	0	0	0	0	10171	1276	44	3		3	MYO3B	2	171034992	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	96583	171034992	72164381	96	54580											
TMEFF2	23671	broad.mit.edu	37	chr2	193059331	193059331	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggcagcgggctactgagCatcccgcggacggcggcagc	17	15	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193059331	A	A	193059331	1	1	50	0	1	0	0	0	0	0	0	0	16137	725	25	3		3	TMEFF2	2	193059331	5'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	22024339	193059331	50140042	97	54581											
SGOL2	151246	broad.mit.edu	37	chr2	201405757	201405758	+	Intron	INS	-	G	G													tcccatgatagaaggtggaaINSggcaagaaagcatgcaagac					rs145769853	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201405758	G	G	201405757	6	5	50	0	1	1	1	0	0	0	0	0	14330	87	3	0		0	SGOL2	2	201405757	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	8346426	201405757	41793616	98	54582											
FN1	2335	broad.mit.edu	37	chr2	216295507	216295507	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctaccatcatccagccttGgtagggcttctcccacgttt	7	14	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216295507	A	A	216295507	4	1	50	1	0	0	0	0	0	1	0	0	6020	1357	47	4	7018	4	FN1	2	216295507	Nonsense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	14889750	216295507	26903866	99	54583											
COPS7B	64708	broad.mit.edu	37	chr2	232648954	232648955	+	5'Flank	DNP	GC	AT	AT													gtaatctcagcactctgggaGccaaggtgggaggatcactt							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	232648955	AT	AT	232648954	1	1	50	0	1	0	0	0	0	0	0	0	3771	986	34	4		4	COPS7B	2	232648954	5'Flank	DNP	GC	TCGA-17-Z017-01A-01W-0746-08	16353447	232648954	10550419	100	54584											
SPP2	6694	broad.mit.edu	37	chr2	234969392	234969393	+	Intron	DEL	CA	-	-													catatgcacacacacacacgCacacacacacacatgcacac					rs67670810		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	234969393	-	-	234969392	6	5	50	0	1	1	0	1	0	0	0	0	15205	725	25	0		0	SPP2	2	234969392	Intron	DEL	CA	TCGA-17-Z017-01A-01W-0746-08	2320438	234969392	8229981	101	54585											
CAPN10	11132	broad.mit.edu	37	chr2	241528836	241528836	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggctgctgggggattGctggttcctgtgtgcctgcg	19	9	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241528836	A	A	241528836	3	1	50	1	0	0	0	0	1	0	0	0	2649	1319	46	4	224	4	CAPN10	2	241528836	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	6559444	241528836	1670537	102	54586											
LOC401052	401052	broad.mit.edu	37	chr3	10049235	10049235	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccctcagaggcctgacGtaggagtgcttctgggtgag	14	12	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10049235	T	T	10049235	4	4	50	1	0	0	0	0	0	1	0	0	8960	1140	40	3	210	3	LOC401052	3	10049235	Nonsense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08		10049235	187973195	103	54587											
SYN2	6854	broad.mit.edu	37	chr3	12183349	12183350	+	Intron	DNP	TA	GT	GT													gggatgttgctgctgctatgTagaggacttggtgaagtcag							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	12183350	GT	GT	12183349	1	3	50	0	1	0	0	0	0	0	0	0	15560	1653	57	5		5	SYN2	3	12183349	Intron	DNP	TA	TCGA-17-Z017-01A-01W-0746-08	2134114	12183349	185839081	104	54588											
PLCL2	23228	broad.mit.edu	37	chr3	17056386	17056386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaggttctgaagaagatcGtaacaacttatgacatggtg	12	6	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17056386	A	A	17056386	3	1	50	1	0	0	0	0	1	0	0	0	12135	1145	40	4	3005	4	PLCL2	3	17056386	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4873037	17056386	180966044	105	54589											
GOLGA4	2803	broad.mit.edu	37	chr3	37343688	37343688	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctattcagggaatggtaatcGcagagacaaaacgtcagatg	11	7	2	2	rs141780526	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37343688	A	A	37343688	3	1	50	1	0	0	0	0	1	0	0	0	6619	1087	38	4	1207	4	GOLGA4	3	37343688	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	20287302	37343688	160678742	106	54590											
GOLGA4	2803	broad.mit.edu	37	chr3	37370607	37370607	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtaccttatttcttctctCtcacttttgaaatttagctg	4	9	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37370607	G	G	37370607	1	3	50	0	1	0	0	0	0	0	0	0	6619	928	32	4		4	GOLGA4	3	37370607	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	26919	37370607	160651823	107	54591											
SCN11A	11280	broad.mit.edu	37	chr3	38949398	38949399	+	Intron	DNP	GG	CT	CT													gcaattggacctgtccccctGgacagcaatatggtatcatt							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	38949399	CT	CT	38949398	1	2	50	0	1	0	0	0	0	0	0	0	14026	1363	47	4		4	SCN11A	3	38949398	Intron	DNP	GG	TCGA-17-Z017-01A-01W-0746-08	1578791	38949398	159073032	108	54592											
TRAK1	22906	broad.mit.edu	37	chr3	42132947	42132947	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctctgaagtgcctttggAgtttatgtctgcacatggca	11	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42132947	G	G	42132947	1	3	50	0	1	0	0	0	0	0	0	0	16573	319	11	5		5	TRAK1	3	42132947	5'UTR	SNP	A	TCGA-17-Z017-01A-01W-0746-08	3183549	42132947	155889483	109	54593											
FLNB	2317	broad.mit.edu	37	chr3	58095863	58095863	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatgtgcctcctgctgctgGgcgatacactatcaaagttc	9	11	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58095863	C	C	58095863	3	2	50	1	0	0	0	0	1	0	0	0	5992	1232	43	4	2512	4	FLNB	3	58095863	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	15962916	58095863	139926567	110	54594											
LMOD3	56203	broad.mit.edu	37	chr3	69171195	69171195	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacaacagagagacctaacAgcccatcccaggcagccatt	7	14	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69171195	T	T	69171195	1	4	50	0	1	0	0	0	0	0	0	0	8932	203	7	5		5	LMOD3	3	69171195	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	11075332	69171195	128851235	111	54595											
FOXP1	27086	broad.mit.edu	37	chr3	71461155	71461155	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaaatgatgaagaatgttGttattactattaaaagcgca	7	4	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71461155	C	C	71461155	1	2	50	0	1	0	0	0	0	0	0	0	6086	1392	48	4		4	FOXP1	3	71461155	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2289960	71461155	126561275	112	54596											
VGLL3	389136	broad.mit.edu	37	chr3	87039757	87039757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccagcaggctgcccgtcCggtgactcacctgctggcca	11	19	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87039757	A	A	87039757	1	1	50	0	1	0	0	0	0	0	0	0	17287	667	23	1		1	VGLL3	3	87039757	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	15578602	87039757	110982673	113	54597											
EPHA3	2042	broad.mit.edu	37	chr3	89521514	89521514	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatgaaaggaacaccataTgaagtctggaagttcctgcc	9	9	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89521514	A	A	89521514	1	1	50	0	1	0	0	0	0	0	0	0	5210	1479	51	5		5	EPHA3	3	89521514	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	2481757	89521514	108500916	114	54598											
ABI3BP	25890	broad.mit.edu	37	chr3	100568898	100568898	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattagttaccaggtgtcgTaggctgcatttctggactgg	12	8	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100568898	A	A	100568898	3	1	50	1	0	0	0	0	1	0	0	0	91	1638	57	5	1945	5	ABI3BP	3	100568898	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	11047384	100568898	97453532	115	54599											
DZIP3	9666	broad.mit.edu	37	chr3	108344739	108344739	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggtgatgaagatgatgatCcaagaaaatgaaatttgtga	11	3	0	8	rs140722866		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108344739	A	A	108344739	2	1	50	1	0	0	0	0	0	0	0	1	4905	845	30	3		3	DZIP3	3	108344739	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7775841	108344739	89677691	116	54600											
TRAT1	50852	broad.mit.edu	37	chr3	108572676	108572676	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacattcatgatgatccCatcagactgtttggattgat	8	7	2	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108572676	T	T	108572676	2	4	50	1	0	0	0	0	0	0	0	1	16590	581	21	4		4	TRAT1	3	108572676	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	227937	108572676	89449754	117	54601											
MORC1	27136	broad.mit.edu	37	chr3	108764189	108764190	+	Intron	INS	-	T	T													cctctcatttaaagctaatgINStaacagccaggcatcagacc					rs141226472	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108764190	T	T	108764189	6	5	50	0	1	1	1	0	0	0	0	0	9795	1392	48	0		0	MORC1	3	108764189	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	191513	108764189	89258241	118	54602											
LSAMP	4045	broad.mit.edu	37	chr3	115765173	115765173	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccattaagcactgaggtagActgcctggaagtggaaaata	11	8	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115765173	G	G	115765173	1	3	50	0	1	0	0	0	0	0	0	0	9135	290	10	5		5	LSAMP	3	115765173	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	7000984	115765173	82257257	119	54603											
NR1I2	8856	broad.mit.edu	37	chr3	119535812	119535812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccttgtctcttggctgaCctgaaatgtccagagattat	9	9	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119535812	A	A	119535812	1	1	50	0	1	0	0	0	0	0	0	0	10715	522	18	3		3	NR1I2	3	119535812	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3770639	119535812	78486618	120	54604											
IFT122	55764	broad.mit.edu	37	chr3	129236289	129236289	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggcctccagccccctcAgccctttctctatgccctcc	6	21	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129236289	C	C	129236289	1	2	50	0	1	0	0	0	0	0	0	0	7625	203	7	5		5	IFT122	3	129236289	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	9700477	129236289	68786141	121	54605											
COL6A6	131873	broad.mit.edu	37	chr3	130300341	130300341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcccttgattcagacatGgtgtctgagttaaataaagg	10	6	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130300341	T	T	130300341	1	4	50	0	1	0	0	0	0	0	0	0	3735	1363	47	2		2	COL6A6	3	130300341	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1064052	130300341	67722089	122	54606											
SRPRB	58477	broad.mit.edu	37	chr3	133524896	133524896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggcgggcagaggtccgGgctttggctgcaccgctgca	18	11	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133524896	T	T	133524896	1	4	50	0	1	0	0	0	0	0	0	0	15281	1247	43	2		2	SRPRB	3	133524896	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3224555	133524896	64497534	123	54607											
TRPC1	7220	broad.mit.edu	37	chr3	142499778	142499778	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagttattctaaaccatacGtctagtgacgagcctcttga	8	9	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142499778	T	T	142499778	2	4	50	1	0	0	0	0	0	0	0	1	16703	1132	40	3		3	TRPC1	3	142499778	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8974882	142499778	55522652	124	54608											
CPA3	1359	broad.mit.edu	37	chr3	148597578	148597578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttacttttaaatagattGgggaaaagaatgaaagaaga	10	1	0	5			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148597578	T	T	148597578	3	4	50	1	0	0	0	0	1	0	0	0	3823	1348	47	2	500	2	CPA3	3	148597578	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	6097800	148597578	49424852	125	54609											
HLTF	6596	broad.mit.edu	37	chr3	148750077	148750077	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcagcatttggttttttaGttccaaaggctcctgctgca	9	10	1	0	rs144381721	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148750077	A	A	148750077	3	1	50	1	0	0	0	0	1	0	0	0	7282	1029	36	4	73	4	HLTF	3	148750077	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	152499	148750077	49272353	126	54610											
RSRC1	51319	broad.mit.edu	37	chr3	157920997	157920997	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagagaaaaggagaaggatAaagggaaggacaaggaatta	14	1	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157920997	T	T	157920997	4	4	50	1	0	0	0	0	0	1	0	0	13825	363	13	5	467	5	RSRC1	3	157920997	Nonsense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	9170920	157920997	40101433	127	54611											
GFM1	85476	broad.mit.edu	37	chr3	158408161	158408161	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttttattaaccatagaagGaaatccaggttagcttttgt	8	6	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158408161	C	C	158408161	1	2	50	0	1	0	0	0	0	0	0	0	6405	1189	41	4		4	GFM1	3	158408161	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	487164	158408161	39614269	128	54612											
ATP11B	23200	broad.mit.edu	37	chr3	182598641	182598641	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattgaacttgcgtcataAataaccaattcattatgtct	4	7	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182598641	G	G	182598641	1	3	50	0	1	0	0	0	0	0	0	0	1124	29	1	5		5	ATP11B	3	182598641	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	24190480	182598641	15423789	129	54613											
PSMD2	5708	broad.mit.edu	37	chr3	184024429	184024429	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggttctgtatgtaaggggTaaaggtgttccccacaggat	14	6	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184024429	A	A	184024429	1	1	50	0	1	0	0	0	0	0	0	0	12804	1653	57	5		5	PSMD2	3	184024429	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1425788	184024429	13998001	130	54614											
DGKG	1608	broad.mit.edu	37	chr3	186024608	186024608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagttcttcaaggcaagcGgagtctccaagagggaaaca	12	9	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186024608	T	T	186024608	1	4	50	0	1	0	0	0	0	0	0	0	4509	1131	39	1		1	DGKG	3	186024608	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2000179	186024608	11997822	131	54615											
HRG	3273	broad.mit.edu	37	chr3	186395280	186395280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcctcatggacaccacCcccatggacaccatccccat	4	20	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186395280	A	A	186395280	3	1	50	1	0	0	0	0	1	0	0	0	7421	623	22	2	1212	2	HRG	3	186395280	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	370672	186395280	11627150	132	54616											
RTP4	64108	broad.mit.edu	37	chr3	187086403	187086403	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgagtgtgggtttcccaGgcaatagctcttctgagaag	14	7	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187086403	A	A	187086403	1	1	50	0	1	0	0	0	0	0	0	0	13847	1015	35	4		4	RTP4	3	187086403	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	691123	187086403	10936027	133	54617											
MUC20	200958	broad.mit.edu	37	chr3	195461856	195461856	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgacctcaagtgatccacCcacctcggcctcccaaagtg	7	18	1	2	rs140268940	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195461856	T	T	195461856	1	4	50	0	1	0	0	0	0	0	0	0	10070	638	22	4		4	MUC20	3	195461856	3'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	8375453	195461856	2560574	134	54618											
ZNF595	152687	broad.mit.edu	37	chr4	65052	65052	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcagtaagaccaagctcgGtgccccatttccttgtctgt	8	13	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65052	A	A	65052	1	1	50	0	1	0	0	0	0	0	0	0	18152	1276	44	4		4	ZNF595	4	65052	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08		65052	191089224	135	54619											
ZNF595	152687	broad.mit.edu	37	chr4	67359	67359	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaattatatcgtttctgtcCttttgtgcctgggcttcttc	9	9	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67359	T	T	67359	1	4	50	0	1	0	0	0	0	0	0	0	18152	696	24	4		4	ZNF595	4	67359	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2307	67359	191086917	136	54620											
GRK4	2868	broad.mit.edu	37	chr4	2990509	2990509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggaagacgtctcttcagGcagttctgtgataccaaacc	9	10	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2990509	T	T	2990509	3	4	50	1	0	0	0	0	1	0	0	0	6857	1194	42	3	214	3	GRK4	4	2990509	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2923150	2990509	188163767	137	54621											
KIAA0232	9778	broad.mit.edu	37	chr4	6873323	6873323	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtattgaacactgataTacaaggaatgaatagaagtc	8	7	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6873323	C	C	6873323	3	2	50	1	0	0	0	0	1	0	0	0	8233	1406	49	5	3846	5	KIAA0232	4	6873323	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	3882814	6873323	184280953	138	54622											
BOD1L	259282	broad.mit.edu	37	chr4	13614670	13614670	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcccttggctgattttaatCtgagcaccttaactgtaaac	6	10	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13614670	A	A	13614670	1	1	50	0	1	0	0	0	0	0	0	0	1489	928	32	3		3	BOD1L	4	13614670	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6741347	13614670	177539606	139	54623											
LCORL	254251	broad.mit.edu	37	chr4	17964540	17964541	+	Intron	DEL	TG	-	-													aattaagataaaaaaaaaacTgtgttacaattgtgcattag							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17964541	-	-	17964540	6	5	50	0	1	1	0	1	0	0	0	0	8762	1595	55	0		0	LCORL	4	17964540	Intron	DEL	TG	TCGA-17-Z017-01A-01W-0746-08	4349870	17964540	173189736	140	54624											
PPARGC1A	10891	broad.mit.edu	37	chr4	23815833	23815833	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtctgaatctgtggaagAacaaatctgcccctgccaat	9	11	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23815833	T	T	23815833	3	4	50	1	0	0	0	0	1	0	0	0	12396	246	9	5	1147	5	PPARGC1A	4	23815833	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	5851293	23815833	167338443	141	54625											
PCDH7	5099	broad.mit.edu	37	chr4	30938670	30938671	+	Intron	DEL	AG	-	-													actcaatgggaagaggcataAgaaaatattgcattaagagc					rs146745574		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30938671	-	-	30938670	6	5	50	0	1	1	0	1	0	0	0	0	11610	87	3	0		0	PCDH7	4	30938670	Intron	DEL	AG	TCGA-17-Z017-01A-01W-0746-08	7122837	30938670	160215606	142	54626											
PDS5A	23244	broad.mit.edu	37	chr4	39975301	39975301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccatcgtatgtagctttaGctcagcgcaaagaagagtgc	10	9	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39975301	T	T	39975301	1	4	50	0	1	0	0	0	0	0	0	0	11785	986	34	3		3	PDS5A	4	39975301	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	9036631	39975301	151178975	143	54627											
RHOH	399	broad.mit.edu	37	chr4	40245314	40245314	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagtggattggtgaaattaGgagcaacttgccctgtaccc	11	9	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40245314	C	C	40245314	3	2	50	1	0	0	0	0	1	0	0	0	13449	1000	35	4	310	4	RHOH	4	40245314	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	270013	40245314	150908962	144	54628											
YIPF7	285525	broad.mit.edu	37	chr4	44638008	44638008	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaataataatctgagttggAtgctggctgaaaaaattgtc	10	4	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44638008	G	G	44638008	3	3	50	1	0	0	0	0	1	0	0	0	17610	333	12	5	575	5	YIPF7	4	44638008	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	4392694	44638008	146516268	145	54629											
FRYL	285527	broad.mit.edu	37	chr4	48564880	48564880	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaatcctgagtaaaaaaAtatttaaattcacatgttta	3	4	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48564880	G	G	48564880	1	3	50	0	1	0	0	0	0	0	0	0	6124	116	4	5		5	FRYL	4	48564880	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	3926872	48564880	142589396	146	54630											
KDR	3791	broad.mit.edu	37	chr4	55963852	55963852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacattttgactgctactGtcctgcaagttgctgtcttg	8	10	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55963852	T	T	55963852	3	4	50	1	0	0	0	0	1	0	0	0	8209	1377	48	3	1531	3	KDR	4	55963852	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7398972	55963852	135190424	147	54631											
TECRL	253017	broad.mit.edu	37	chr4	65274942	65274942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttggtcttagagggcccGctgagagtacaagttttgac	14	7	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65274942	T	T	65274942	3	4	50	1	0	0	0	0	1	0	0	0	15868	1087	38	3	1011	3	TECRL	4	65274942	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	9311090	65274942	125879334	148	54632											
CSN1S1	1446	broad.mit.edu	37	chr4	70803490	70803490	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgactatttgtcatgaaaaaTgaaattgattattttttctt	5	3	2	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70803490	C	C	70803490	1	2	50	0	1	0	0	0	0	0	0	0	3981	1479	51	5		5	CSN1S1	4	70803490	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	5528548	70803490	120350786	149	54633											
CENPE	1062	broad.mit.edu	37	chr4	104107059	104107059	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatccttagggcagataattTgaaataataaaattcaaact	5	5	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104107059	A	A	104107059	1	1	50	0	1	0	0	0	0	0	0	0	3260	1827	63	5		5	CENPE	4	104107059	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	33303569	104107059	87047217	150	54634											
NDST4	64579	broad.mit.edu	37	chr4	115856324	115856324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaacacatttaaaaatGctaatcttattgtaaggtgc	5	5	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115856324	T	T	115856324	1	4	50	0	1	0	0	0	0	0	0	0	10353	1334	46	3		3	NDST4	4	115856324	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	11749265	115856324	75297952	151	54635											
BBS7	55212	broad.mit.edu	37	chr4	122791422	122791422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcggcgcccgccctatccCttgggtttacctgcagataa	11	15	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122791422	A	A	122791422	1	1	50	0	1	0	0	0	0	0	0	0	1346	696	24	2		2	BBS7	4	122791422	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6935098	122791422	68362854	152	54636											
CLGN	1047	broad.mit.edu	37	chr4	141330967	141330967	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaggccatactggttatatCtaatacttaaataaatattt	4	7	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141330967	A	A	141330967	1	1	50	0	1	0	0	0	0	0	0	0	3556	928	32	3		3	CLGN	4	141330967	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	18539545	141330967	49823309	153	54637											
PLRG1	5356	broad.mit.edu	37	chr4	155467450	155467450	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgatgaaggaaaacaTacaccaaatgtttattatct	5	5	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155467450	A	A	155467450	1	1	50	0	1	0	0	0	0	0	0	0	12201	1421	49	5		5	PLRG1	4	155467450	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	14136483	155467450	35686826	154	54638											
FNIP2	57600	broad.mit.edu	37	chr4	159817052	159817052	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgccgtcacttgtccctttGataggtatccctagcattgt	9	11	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159817052	C	C	159817052	1	2	50	0	1	0	0	0	0	0	0	0	6034	1305	45	4		4	FNIP2	4	159817052	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4349602	159817052	31337224	155	54639											
CPE	1363	broad.mit.edu	37	chr4	166325212	166325212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgagtgaggcatgaggCctgctcactgatgaaacttc	12	9	1	6			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166325212	A	A	166325212	1	1	50	0	1	0	0	0	0	0	0	0	3831	754	26	3		3	CPE	4	166325212	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6508160	166325212	24829064	156	54640											
DDX60L	91351	broad.mit.edu	37	chr4	169377245	169377245	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagtgacacagagaacaCgctggatgtccgatccttct	10	10	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169377245	T	T	169377245	3	4	50	1	0	0	0	0	1	0	0	0	4412	536	19	4	4466	4	DDX60L	4	169377245	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3052033	169377245	21777031	157	54641											
PALLD	23022	broad.mit.edu	37	chr4	169632119	169632120	+	Intron	DEL	TG	-	-													tgccaggagctctgctgggcTgtgtgggcaaggtgcagaat					rs66609742		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169632120	-	-	169632119	6	5	50	0	1	1	0	1	0	0	0	0	11501	1595	55	0		0	PALLD	4	169632119	Intron	DEL	TG	TCGA-17-Z017-01A-01W-0746-08	254874	169632119	21522157	158	54642											
UFSP2	55325	broad.mit.edu	37	chr4	186339797	186339797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtcagttctccaggaatGgtgtttatgtcactgctagg	11	8	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186339797	T	T	186339797	2	4	50	1	0	0	0	0	0	0	0	1	17064	1335	47	2		2	UFSP2	4	186339797	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	16707678	186339797	4814479	159	54643											
TRIML2	205860	broad.mit.edu	37	chr4	189027932	189027932	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtccgtggttccccggcCcgcgctgggaaagtgacagg	15	13	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189027932	A	A	189027932	1	1	50	0	1	0	0	0	0	0	0	0	16676	638	22	2		2	TRIML2	4	189027932	5'Flank	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2688135	189027932	2126344	160	54644											
SLC6A19	340024	broad.mit.edu	37	chr5	1216989	1216989	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacatgcagcagcggtgcAacgcctccgaccccgcggcc	13	17	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1216989	C	C	1216989	3	2	50	1	0	0	0	0	1	0	0	0	14796	130	5	5	1132	5	SLC6A19	5	1216989	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08		1216989	179698271	161	54645											
KIAA0947	23379	broad.mit.edu	37	chr5	5429424	5429424	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacatgatgagccattttcAtcagtttggggaatgatggg	12	5	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5429424	C	C	5429424	1	2	50	0	1	0	0	0	0	0	0	0	8272	232	8	5		5	KIAA0947	5	5429424	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	4212435	5429424	175485836	162	54646											
NSUN2	54888	broad.mit.edu	37	chr5	6616984	6616984	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaagctaaggggagataTcagatgactgcaaggccaaa	12	7	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6616984	A	A	6616984	1	1	50	0	1	0	0	0	0	0	0	0	10773	1450	50	5		5	NSUN2	5	6616984	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1187560	6616984	174298276	163	54647											
TAS2R1	50834	broad.mit.edu	37	chr5	9630051	9630051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttgatcaagtcaatgcCattcaccaccacaatgatgc	7	12	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9630051	A	A	9630051	3	1	50	1	0	0	0	0	1	0	0	0	15684	594	21	2	809	2	TAS2R1	5	9630051	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3013067	9630051	171285209	164	54648											
DNAH5	1767	broad.mit.edu	37	chr5	13754481	13754481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcacaagaaagcttttaCtgaaataaacatagccactg	5	8	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13754481	A	A	13754481	1	1	50	0	1	0	0	0	0	0	0	0	4644	580	20	3		3	DNAH5	5	13754481	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4124430	13754481	167160779	165	54649											
DNAH5	1767	broad.mit.edu	37	chr5	13758741	13758741	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgctgtcatcactaccaAcaccactaacaaagaaactc	4	13	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13758741	G	G	13758741	1	3	50	0	1	0	0	0	0	0	0	0	4644	58	2	5		5	DNAH5	5	13758741	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	4260	13758741	167156519	166	54650											
CDH12	1010	broad.mit.edu	37	chr5	21882647	21882647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactctgtccctcactcgccGccgacaacctgtctcgccgc	7	21	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21882647	A	A	21882647	1	1	50	0	1	0	0	0	0	0	0	0	3128	1102	38	4		4	CDH12	5	21882647	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8123906	21882647	159032613	167	54651											
CDH10	1008	broad.mit.edu	37	chr5	24488323	24488323	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacactataaataacgagtgGaaatactataaaagagttta	6	4	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24488323	A	A	24488323	1	1	50	0	1	0	0	0	0	0	0	0	3126	1189	41	4		4	CDH10	5	24488323	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2605676	24488323	156426937	168	54652											
PDZD2	23037	broad.mit.edu	37	chr5	31725851	31725851	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcaacgtgatttagccTtcatttctttcttgggctgg	10	10	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31725851	G	G	31725851	1	3	50	0	1	0	0	0	0	0	0	0	11795	1624	56	5		5	PDZD2	5	31725851	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	7237528	31725851	149189409	169	54653											
IL7R	3575	broad.mit.edu	37	chr5	35871120	35871120	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actataattatttccttggcTgccctttagacagaatttat	5	8	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35871120	A	A	35871120	1	1	50	0	1	0	0	0	0	0	0	0	7775	1595	55	5		5	IL7R	5	35871120	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	4145269	35871120	145044140	170	54654											
UGT3A2	167127	broad.mit.edu	37	chr5	36069064	36069064	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggaaggaaggaaggaAggaaggaaggaaggaaggaa	20	0	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36069064	C	C	36069064	1	2	50	0	1	0	0	0	0	0	0	0	17090	87	3	5		5	UGT3A2	5	36069064	5'Flank	SNP	A	TCGA-17-Z017-01A-01W-0746-08	197944	36069064	144846196	171	54655											
SLC1A3	6507	broad.mit.edu	37	chr5	36686113	36686113	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcctaacgtaagttgaaaActtgtgatgctcacgggagc	11	8	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36686113	T	T	36686113	1	4	50	0	1	0	0	0	0	0	0	0	14546	58	2	5		5	SLC1A3	5	36686113	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	617049	36686113	144229147	172	54656											
FYB	2533	broad.mit.edu	37	chr5	39202804	39202804	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgaatctttggcctgctcCagtgggctttagaaacgggg	13	10	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39202804	A	A	39202804	4	1	50	1	0	0	0	0	0	1	0	0	6184	603	21	2	2302	2	FYB	5	39202804	Nonsense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2516691	39202804	141712456	173	54657											
HEATR7B2	133558	broad.mit.edu	37	chr5	41018009	41018009	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgacggatggtgggcaGggtatcacaggagtgaggag	19	7	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41018009	C	C	41018009	3	2	50	1	0	0	0	0	1	0	0	0	7102	991	35	4	1990	4	HEATR7B2	5	41018009	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1815205	41018009	139897251	174	54658											
ERBB2IP	55914	broad.mit.edu	37	chr5	65350250	65350250	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatttctctaatcataacaAtgttcgagctaatactgcat	5	8	2	0	rs137933401	byFrequency;by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65350250	T	T	65350250	3	4	50	1	0	0	0	0	1	0	0	0	5249	101	4	5	3178	5	ERBB2IP	5	65350250	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	24332241	65350250	115565010	175	54659											
RGNEF	64283	broad.mit.edu	37	chr5	73136189	73136189	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcaagtgatctgccagcCtcggcctcctaccacgcctg	8	18	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73136189	T	T	73136189	1	4	50	0	1	0	0	0	0	0	0	0	13391	696	24	4		4	RGNEF	5	73136189	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7785939	73136189	107779071	176	54660											
SV2C	22987	broad.mit.edu	37	chr5	75505736	75505736	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggctggccttgccccagCtgggcagtcacttcattttg	12	12	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75505736	T	T	75505736	1	4	50	0	1	0	0	0	0	0	0	0	15537	812	28	4		4	SV2C	5	75505736	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2369547	75505736	105409524	177	54661											
BHMT2	23743	broad.mit.edu	37	chr5	78379105	78379105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggtcttgagtgggcagGgctgaaagcgcacctcatgg	18	8	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78379105	T	T	78379105	3	4	50	1	0	0	0	0	1	0	0	0	1432	1232	43	2	711	2	BHMT2	5	78379105	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2873369	78379105	102536155	178	54662											
ACOT12	134526	broad.mit.edu	37	chr5	80626271	80626271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaactgtatacaagagGctgctgtttcttcaatggat	9	7	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80626271	T	T	80626271	3	4	50	1	0	0	0	0	1	0	0	0	150	1203	42	3	61	3	ACOT12	5	80626271	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2247166	80626271	100288989	179	54663											
VCAN	1462	broad.mit.edu	37	chr5	82786291	82786291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgtcactgactgtggatGgtaaggcttttattatctgc	12	7	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82786291	T	T	82786291	3	4	50	1	0	0	0	0	1	0	0	0	17265	1362	47	2	451	2	VCAN	5	82786291	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2160020	82786291	98128969	180	54664											
RIOK2	55781	broad.mit.edu	37	chr5	96518691	96518691	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatccgactttctgaaTgctctcttctccattcccag	4	13	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96518691	G	G	96518691	1	3	50	0	1	0	0	0	0	0	0	0	13489	1479	51	5		5	RIOK2	5	96518691	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	13732400	96518691	84396569	181	54665											
FBXL17	64839	broad.mit.edu	37	chr5	107559933	107559933	+	Intron	DEL	G	-	-													actgactgatctgtcacctaGggaaaagacatggatgaaat							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107559933	-	-	107559933	6	5	50	0	1	1	0	1	0	0	0	0	5770	1015	35	0		0	FBXL17	5	107559933	Intron	DEL	G	TCGA-17-Z017-01A-01W-0746-08	11041242	107559933	73355327	182	54666											
SNX24	28966	broad.mit.edu	37	chr5	122271419	122271419	+	Intron	DEL	A	-	-													tgtgcgaccttgtatgtcatAtgccaaatttaagtagtttt					rs10715896		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122271419	-	-	122271419	6	5	50	0	1	1	0	1	0	0	0	0	15009	464	16	0		0	SNX24	5	122271419	Intron	DEL	A	TCGA-17-Z017-01A-01W-0746-08	14711486	122271419	58643841	183	54667											
FBN2	2201	broad.mit.edu	37	chr5	127686693	127686693	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccaacaggtccccttcagGctgtctgaaaaggaacagga	11	11	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127686693	C	C	127686693	3	2	50	1	0	0	0	0	1	0	0	0	5760	1194	42	4	6239	4	FBN2	5	127686693	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5415274	127686693	53228567	184	54668											
FSTL4	23105	broad.mit.edu	37	chr5	132540690	132540690	+	Intron	DEL	T	-	-													ttattcaaatgatttcatacTttttttttgtgataatgcat							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132540690	-	-	132540690	6	5	50	0	1	1	0	1	0	0	0	0	6139	1624	56	0		0	FSTL4	5	132540690	Intron	DEL	T	TCGA-17-Z017-01A-01W-0746-08	4853997	132540690	48374570	185	54669											
PCDHB7	56129	broad.mit.edu	37	chr5	140553933	140553933	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcgcctccctggtctccaTcaacgcggacaacggccacc	8	20	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140553933	A	A	140553933	3	1	50	1	0	0	0	0	1	0	0	0	11641	1435	50	5	1519	5	PCDHB7	5	140553933	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	8013243	140553933	40361327	186	54670			2	50		3	3	741	N	T_C_A	8.900009e-05
PCDHB7	56129	broad.mit.edu	37	chr5	140554452	140554452	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcccggaggcggccccggAccaggccaactcgctcaccg	13	19	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140554452	T	T	140554452	3	4	50	1	0	0	0	0	1	0	0	0	11641	275	10	5	2038	5	PCDHB7	5	140554452	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	519	140554452	40360808	187	54671			2	50		3	3	741	N	T_C_A	8.900009e-05
PCDHB7	56129	broad.mit.edu	37	chr5	140554673	140554673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaccagtatgaggtgtgcCtgactggaggctccgggaca	15	10	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140554673	A	A	140554673	3	1	50	1	0	0	0	0	1	0	0	0	11641	680	24	2	2259	2	PCDHB7	5	140554673	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	221	140554673	40360587	188	54672			2	50		3	3	741	N	T_C_A	8.900009e-05
PCDHB11	56125	broad.mit.edu	37	chr5	140579470	140579470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagaagaaatgcagagCgggagttttgtaggcaatct	15	5	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140579470	A	A	140579470	3	1	50	1	0	0	0	0	1	0	0	0	11630	767	27	3	125	3	PCDHB11	5	140579470	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	24797	140579470	40335790	189	54673											
PCDHGA3	56112	broad.mit.edu	37	chr5	140723843	140723843	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctctctgaatccgcaaagCggcagcttggtcaccgcgga	11	13	3	1	rs143610564	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140723843	G	G	140723843	3	3	50	1	0	0	0	0	1	0	0	0	11649	767	27	4	245	4	PCDHGA3	5	140723843	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	144373	140723843	40191417	190	54674											
PCDHGB3	56102	broad.mit.edu	37	chr5	140751832	140751832	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgggcctgcgcacggGtgaggtgcgcacggcgcgta	18	13	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140751832	C	C	140751832	3	2	50	1	0	0	0	0	1	0	0	0	11658	1261	44	4	1873	4	PCDHGB3	5	140751832	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	27989	140751832	40163428	191	54675											
PCDHGA7	56108	broad.mit.edu	37	chr5	140764399	140764399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagcagagcctcgtggtgGccgtccaggaccacggtcag	14	13	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140764399	T	T	140764399	3	4	50	1	0	0	0	0	1	0	0	0	11653	1203	42	3	1935	3	PCDHGA7	5	140764399	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	12567	140764399	40150861	192	54676											
RBM22	55696	broad.mit.edu	37	chr5	150079948	150079948	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagaaacacttcacagtgTgcaagtaccacaacatcgac	7	11	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150079948	C	C	150079948	1	2	50	0	1	0	0	0	0	0	0	0	13230	1711	59	5		5	RBM22	5	150079948	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	9315549	150079948	30835312	193	54677											
ITK	3702	broad.mit.edu	37	chr5	156608054	156608054	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacaaaagagaagaacttcTccctcgaactttaaagtccg	6	11	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156608054	C	C	156608054	2	2	50	1	0	0	0	0	0	0	0	1	7979	1538	54	5		5	ITK	5	156608054	Silent	SNP	T	TCGA-17-Z017-01A-01W-0746-08	6528106	156608054	24307206	194	54678											
CCNG1	900	broad.mit.edu	37	chr5	162869132	162869132	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacagaaggaatagaatgtCttcagaaacattccaaggta	8	6	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162869132	T	T	162869132	3	4	50	1	0	0	0	0	1	0	0	0	2953	913	32	4	693	4	CCNG1	5	162869132	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6261078	162869132	18046128	195	54679											
DOCK2	1794	broad.mit.edu	37	chr5	169443016	169443016	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attttaccctacagtccactCctgggaggagtgatggagga	12	9	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169443016	A	A	169443016	1	1	50	0	1	0	0	0	0	0	0	0	4727	870	30	3		3	DOCK2	5	169443016	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6573884	169443016	11472244	196	54680											
RPL26L1	51121	broad.mit.edu	37	chr5	172396315	172396315	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccagagtttcagttccttAaaagctgaatggctgaggtc	10	8	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172396315	G	G	172396315	1	3	50	0	1	0	0	0	0	0	0	0	13685	377	13	5		5	RPL26L1	5	172396315	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	2953299	172396315	8518945	197	54681											
C5orf41	153222	broad.mit.edu	37	chr5	172537372	172537372	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggccagcccttctaggAtagattgttaaacatgctaa	10	8	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172537372	G	G	172537372	1	3	50	0	1	0	0	0	0	0	0	0	2323	348	12	5		5	C5orf41	5	172537372	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	141057	172537372	8377888	198	54682											
FAF2	23197	broad.mit.edu	37	chr5	175906377	175906381	+	Intron	DEL	AAAAT	-	-													ttttcagaattatgactctaAaaataaaagtgcaggaaggt							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	175906381	-	-	175906377	6	5	50	0	1	1	0	1	0	0	0	0	5416	29	1	0		0	FAF2	5	175906377	Intron	DEL	AAAAT	TCGA-17-Z017-01A-01W-0746-08	3369005	175906377	5008883	199	54683											
HK3	3101	broad.mit.edu	37	chr5	176310847	176310847	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccgtgtcattgacaatGgcaaccacattcagctccac	6	16	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176310847	A	A	176310847	2	1	50	1	0	0	0	0	0	0	0	1	7259	1335	47	4		4	HK3	5	176310847	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	404470	176310847	4604413	200	54684											
CDYL	9425	broad.mit.edu	37	chr6	4892621	4892621	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaacgggaaaggtgagtgTctagggagctgctcaggctc	16	7	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4892621	C	C	4892621	1	2	50	0	1	0	0	0	0	0	0	0	3215	1682	58	5		5	CDYL	6	4892621	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08		4892621	166222446	201	54685											
FARS2	10667	broad.mit.edu	37	chr6	5285978	5285978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtttcagtgtctgtctcaGtgatgttatctctgtgggta	11	6	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5285978	T	T	5285978	1	4	50	0	1	0	0	0	0	0	0	0	5735	1044	36	3		3	FARS2	6	5285978	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	393357	5285978	165829089	202	54686											
BMP6	654	broad.mit.edu	37	chr6	7786028	7786028	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacactgagatcaagagaaCgtgaagaaatatgtccttcc	8	9	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7786028	T	T	7786028	1	4	50	0	1	0	0	0	0	0	0	0	1470	551	19	4		4	BMP6	6	7786028	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2500050	7786028	163329039	203	54687											
TFAP2A	7020	broad.mit.edu	37	chr6	10400917	10400917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccctaattcccttcaccCcagatgttgcaggaaacaca	5	15	1	1	rs111823265	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10400917	A	A	10400917	1	1	50	0	1	0	0	0	0	0	0	0	15910	638	22	2		2	TFAP2A	6	10400917	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2614889	10400917	160714150	204	54688											
TPMT	7172	broad.mit.edu	37	chr6	18147926	18147926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaattatatacccatcaCtaatagaaaaataaggaatt	3	7	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18147926	A	A	18147926	1	1	50	0	1	0	0	0	0	0	0	0	16533	580	20	3		3	TPMT	6	18147926	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7747009	18147926	152967141	205	54689											
BTN2A1	11120	broad.mit.edu	37	chr6	26467861	26467861	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagatcatatgtcttggataGaaaagggaacacatcttaga	10	5	3	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26467861	C	C	26467861	1	2	50	0	1	0	0	0	0	0	0	0	1570	957	33	4		4	BTN2A1	6	26467861	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8319935	26467861	144647206	206	54690											
PGBD1	84547	broad.mit.edu	37	chr6	28266593	28266593	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgggaatgcccaacattccGaggcttctcaggattgcaga	11	11	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28266593	T	T	28266593	1	4	50	0	1	0	0	0	0	0	0	0	11875	1073	37	3		3	PGBD1	6	28266593	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1798732	28266593	142848474	207	54691											
LY6G6F	259215	broad.mit.edu	37	chr6	31682891	31682891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagggatcctcaggggttcTtgttggtccacagactgctg	13	10	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31682891	A	A	31682891	1	1	50	0	1	0	0	0	0	0	0	0	9184	1624	56	5		5	LY6G6F	6	31682891	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	3416298	31682891	139432176	208	54692											
ETV7	51513	broad.mit.edu	37	chr6	36334711	36334711	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaagcttataatagtggcgCagggcacgagacatcttctc	10	9	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36334711	G	G	36334711	2	3	50	1	0	0	0	0	0	0	0	1	5326	697	25	4		4	ETV7	6	36334711	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4651820	36334711	134780356	209	54693											
LRFN2	57497	broad.mit.edu	37	chr6	40493677	40493677	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcagagggccagctacaCgtcaccatctttagcaaata	7	14	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40493677	T	T	40493677	1	4	50	0	1	0	0	0	0	0	0	0	9025	551	19	4		4	LRFN2	6	40493677	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4158966	40493677	130621390	210	54694											
GTPBP2	54676	broad.mit.edu	37	chr6	43593175	43593175	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgaatctcatgcaggtgGcggaaaaggttgagccgagc	15	8	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43593175	A	A	43593175	2	1	50	1	0	0	0	0	0	0	0	1	6945	1190	42	4		4	GTPBP2	6	43593175	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3099498	43593175	127521892	211	54695											
C6orf138	442213	broad.mit.edu	37	chr6	47846929	47846929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactggtagtactgctccaCccaggacactgcagtgaatc	10	12	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47846929	A	A	47846929	3	1	50	1	0	0	0	0	1	0	0	0	2355	507	18	3	893	3	C6orf138	6	47846929	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4253754	47846929	123268138	212	54696											
TFAP2B	7021	broad.mit.edu	37	chr6	50807860	50807860	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attattacctttactgctgtCtttttcaggagaagctgttc	7	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50807860	G	G	50807860	1	3	50	0	1	0	0	0	0	0	0	0	15911	928	32	4		4	TFAP2B	6	50807860	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2960931	50807860	120307207	213	54697											
PKHD1	5314	broad.mit.edu	37	chr6	51524198	51524198	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcgagtattactatttcccAgcctttttctaagactgaaa	5	9	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51524198	T	T	51524198	3	4	50	1	0	0	0	0	1	0	0	0	12066	188	7	5	1526	5	PKHD1	6	51524198	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	716338	51524198	119590869	214	54698											
PRIM2	5558	broad.mit.edu	37	chr6	57257551	57257551	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaagttctttagtgttgatTtgtgagatttttggtgtacc	11	3	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57257551	A	A	57257551	1	1	50	0	1	0	0	0	0	0	0	0	12597	1856	64	5		5	PRIM2	6	57257551	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	5733353	57257551	113857516	215	54699											
COL9A1	1297	broad.mit.edu	37	chr6	71003934	71003934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagccatcaatgtcaattGggcctcttggctttataggt	9	9	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71003934	T	T	71003934	3	4	50	1	0	0	0	0	1	0	0	0	3739	1348	47	2	2345	2	COL9A1	6	71003934	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	13746383	71003934	100111133	216	54700											
IMPG1	3617	broad.mit.edu	37	chr6	76720794	76720795	+	Intron	DNP	GG	CT	CT													gctaaacaactggggaaaaaGgaccttataatccttatggc							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	76720795	CT	CT	76720794	1	2	50	0	1	0	0	0	0	0	0	0	7798	1015	35	4		4	IMPG1	6	76720794	Intron	DNP	GG	TCGA-17-Z017-01A-01W-0746-08	5716860	76720794	94394273	217	54701											
TTK	7272	broad.mit.edu	37	chr6	80720491	80720492	+	Intron	INS	-	GA	GA													tggtctgggtggtgggcattINSttactgcctaaaaatgacaa					rs66832270		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	80720492	GA	GA	80720491	6	5	50	0	1	1	1	0	0	0	0	0	16846	1856	64	0		0	TTK	6	80720491	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	3999697	80720491	90394576	218	54702											
AKIRIN2	55122	broad.mit.edu	37	chr6	88387800	88387800	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatataaaagcattttaaAatcagattttaagcacagca	5	5	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88387800	C	C	88387800	1	2	50	0	1	0	0	0	0	0	0	0	462	29	1	5		5	AKIRIN2	6	88387800	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	7667309	88387800	82727267	219	54703											
EPHA7	2045	broad.mit.edu	37	chr6	93956625	93956625	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acgctccttttgccaacaatCcaacattagctggtgaaggc	8	12	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93956625	T	T	93956625	3	4	50	1	0	0	0	0	1	0	0	0	5214	855	30	4	397	4	EPHA7	6	93956625	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	5568825	93956625	77158442	220	54704											
SLC35F1	222553	broad.mit.edu	37	chr6	118588053	118588053	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaaaatctcaggttcagGggaaaggcagaaccctttct	9	10	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118588053	A	A	118588053	1	1	50	0	1	0	0	0	0	0	0	0	14702	1247	43	4		4	SLC35F1	6	118588053	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	24631428	118588053	52527014	221	54705											
C6orf191	253582	broad.mit.edu	37	chr6	130164648	130164648	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatttagttcactaattgAtaagaatttaaaattaaaac	5	4	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130164648	G	G	130164648	1	3	50	0	1	0	0	0	0	0	0	0	2371	348	12	5		5	C6orf191	6	130164648	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	11576595	130164648	40950419	222	54706											
PARK2	5071	broad.mit.edu	37	chr6	161980026	161980026	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccttgttaattgcatagaAaaaactatcaagatggctga	8	6	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161980026	G	G	161980026	1	3	50	0	1	0	0	0	0	0	0	0	11543	29	1	5		5	PARK2	6	161980026	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	31815378	161980026	9135041	223	54707											
NXPH1	30010	broad.mit.edu	37	chr7	8641162	8641162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttccttttcttcctcatGtgaagaccaaggtatattat	5	8	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8641162	T	T	8641162	1	4	50	0	1	0	0	0	0	0	0	0	10885	1392	48	3		3	NXPH1	7	8641162	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08		8641162	150497501	224	54708											
TMEM195	392636	broad.mit.edu	37	chr7	15433714	15433714	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagagaaatgaagaaaagAgagaagaaacaaaacttcct	8	4	0	6			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15433714	T	T	15433714	1	4	50	0	1	0	0	0	0	0	0	0	16240	319	11	5		5	TMEM195	7	15433714	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	6792552	15433714	143704949	225	54709											
ABCB5	340273	broad.mit.edu	37	chr7	20782578	20782578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgttttcatcctccgtGgcttatccctcagtattgag	8	11	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20782578	T	T	20782578	3	4	50	1	0	0	0	0	1	0	0	0	44	1348	47	2	3238	2	ABCB5	7	20782578	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5348864	20782578	138356085	226	54710											
CDCA7L	55536	broad.mit.edu	37	chr7	21941908	21941908	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttgttggagtactctaTggtgaggtggctggttctgt	15	5	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21941908	C	C	21941908	1	2	50	0	1	0	0	0	0	0	0	0	3121	1479	51	5		5	CDCA7L	7	21941908	3'UTR	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1159330	21941908	137196755	227	54711											
AVL9	23080	broad.mit.edu	37	chr7	32609734	32609734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactaacatcctttttcgaCaacagaaacacctcagtgat	4	12	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32609734	A	A	32609734	3	1	50	1	0	0	0	0	1	0	0	0	1233	479	17	3	1360	3	AVL9	7	32609734	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	10667826	32609734	126528929	228	54712											
ELMO1	9844	broad.mit.edu	37	chr7	37284104	37284104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagatttaggacagatttaActgccatgaagtaaaagaat	8	4	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37284104	T	T	37284104	1	4	50	0	1	0	0	0	0	0	0	0	5107	58	2	5		5	ELMO1	7	37284104	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	4674370	37284104	121854559	229	54713											
POM121L12	285877	broad.mit.edu	37	chr7	53103986	53103986	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacagcaagggtggcaggCggaacctgcagccccggccc	15	15	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103986	T	T	53103986	3	4	50	1	0	0	0	0	1	0	0	0	12336	759	27	4	624	4	POM121L12	7	53103986	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	15819882	53103986	106034677	230	54714											
AUTS2	26053	broad.mit.edu	37	chr7	69808931	69808931	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaaggcacatagtggtgtGagtgttgcagcccattgaag	15	6	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69808931	A	A	69808931	1	1	50	0	1	0	0	0	0	0	0	0	1230	1305	45	4		4	AUTS2	7	69808931	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	16704945	69808931	89329732	231	54715											
SEMA3A	10371	broad.mit.edu	37	chr7	83592525	83592525	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttcattcctgtacctctTcttttcgctcttcatttcgc	4	13	5	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83592525	A	A	83592525	3	1	50	1	0	0	0	0	1	0	0	0	14137	1783	62	5	467	5	SEMA3A	7	83592525	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	13783594	83592525	75546138	232	54716											
RELN	5649	broad.mit.edu	37	chr7	103191755	103191755	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgttgatcttggggatgaAgaaaaaaatgatacaaatta	9	3	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103191755	G	G	103191755	1	3	50	0	1	0	0	0	0	0	0	0	13328	87	3	5		5	RELN	7	103191755	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	19599230	103191755	55946908	233	54717											
SLC26A4	5172	broad.mit.edu	37	chr7	107350427	107350427	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcctgggcaatagaatgaGactctgtctcaaaaacaaac	8	10	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107350427	T	T	107350427	1	4	50	0	1	0	0	0	0	0	0	0	14633	957	33	3		3	SLC26A4	7	107350427	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4158672	107350427	51788236	234	54718											
LAMB4	22798	broad.mit.edu	37	chr7	107692477	107692477	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaggggacgactcactaaTggaatgcactgtggatttca	12	8	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107692477	C	C	107692477	1	2	50	0	1	0	0	0	0	0	0	0	8685	1479	51	5		5	LAMB4	7	107692477	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	342050	107692477	51446186	235	54719											
MDFIC	29969	broad.mit.edu	37	chr7	114591401	114591401	+	Intron	DEL	A	-	-													gaggtccctgaaatgaatggAaaaaaaaaatacagattttt					rs77532545		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114591401	-	-	114591401	6	5	50	0	1	1	0	1	0	0	0	0	9498	261	9	0		0	MDFIC	7	114591401	Intron	DEL	A	TCGA-17-Z017-01A-01W-0746-08	6898924	114591401	44547262	236	54720											
ZNF800	168850	broad.mit.edu	37	chr7	127011773	127011773	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttctttttttcctcaTagtaccatttgaagatgttt	5	6	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127011773	G	G	127011773	1	3	50	0	1	0	0	0	0	0	0	0	18298	1421	49	5		5	ZNF800	7	127011773	3'UTR	SNP	T	TCGA-17-Z017-01A-01W-0746-08	12420372	127011773	32126890	237	54721											
TMEM209	84928	broad.mit.edu	37	chr7	129818491	129818491	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcaggtcttcatacaagtCaatgacgtctcccctgacga	7	13	5	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129818491	A	A	129818491	1	1	50	0	1	0	0	0	0	0	0	0	16257	841	29	3		3	TMEM209	7	129818491	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2806718	129818491	29320172	238	54722											
CPA1	1357	broad.mit.edu	37	chr7	130020972	130020972	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaatctctgtagccgatgaGgcccaggtacagaaggtgaa	13	9	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130020972	A	A	130020972	2	1	50	1	0	0	0	0	0	0	0	1	3821	991	35	4		4	CPA1	7	130020972	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	202481	130020972	29117691	239	54723											
AKR1B10	57016	broad.mit.edu	37	chr7	134216948	134216948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacacactggcctggaaGggaggttgaggccatgtgtg	16	7	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134216948	T	T	134216948	1	4	50	0	1	0	0	0	0	0	0	0	467	1015	35	2		2	AKR1B10	7	134216948	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4195976	134216948	24921715	240	54724											
TRYX3	136541	broad.mit.edu	37	chr7	141955425	141955425	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagcgcagggcaagtagtCagatttcaaatagaccaagt	10	9	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141955425	A	A	141955425	3	1	50	1	0	0	0	0	1	0	0	0	16729	826	29	3	632	3	TRYX3	7	141955425	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7738477	141955425	17183238	241	54725											
OR6V1	346517	broad.mit.edu	37	chr7	142749650	142749650	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctgctggagatcttggtAaccatgactgcagtgcccag	11	12	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142749650	T	T	142749650	2	4	50	1	0	0	0	0	0	0	0	1	11305	349	13	5		5	OR6V1	7	142749650	Silent	SNP	A	TCGA-17-Z017-01A-01W-0746-08	794225	142749650	16389013	242	54726											
CNTNAP2	26047	broad.mit.edu	37	chr7	147797364	147797365	+	Intron	INS	-	C	C													ctcctacagaacaaataaatINScaatgaacgaaacacctagg					rs144583549	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147797365	C	C	147797364	6	5	50	0	1	1	1	0	0	0	0	0	3679	1450	50	0		0	CNTNAP2	7	147797364	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	5047714	147797364	11341299	243	54727											
PDIA4	9601	broad.mit.edu	37	chr7	148702415	148702415	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcaatggcaaaggtgtacTcagggaagtccttggccacc	12	12	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148702415	A	A	148702415	3	1	50	1	0	0	0	0	1	0	0	0	11764	1551	54	5	605	5	PDIA4	7	148702415	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	905051	148702415	10436248	244	54728											
ZNF746	155061	broad.mit.edu	37	chr7	149191324	149191325	+	Frame_Shift_Ins	INS	-	C	C													tcccccttgctgcccgggggINScagccgcaggatccagaagt							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149191325	C	C	149191324	7	5	50	1	0	1	1	0	0	0	0	0	18258	1203	42	0	1666	0	ZNF746	7	149191324	Frame_Shift_Ins	INS	-	TCGA-17-Z017-01A-01W-0746-08	488909	149191324	9947339	245	54729											
PRKAG2	51422	broad.mit.edu	37	chr7	151487003	151487003	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacctccgcagccttatttCtgatgttctctgttccggtc	8	13	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151487003	A	A	151487003	1	1	50	0	1	0	0	0	0	0	0	0	12607	928	32	3		3	PRKAG2	7	151487003	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2295679	151487003	7651660	246	54730											
CSMD1	64478	broad.mit.edu	37	chr8	3047572	3047572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggcagaaaactcagaacCaattctccttccgtatctgg	8	13	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3047572	A	A	3047572	3	1	50	1	0	0	0	0	1	0	0	0	3978	594	21	2	5582	2	CSMD1	8	3047572	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08		3047572	143316450	247	54731											
CSMD1	64478	broad.mit.edu	37	chr8	4757507	4757507	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatgggtcttatttttagtCtaagtaggatgtctgttgct	10	4	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4757507	A	A	4757507	1	1	50	0	1	0	0	0	0	0	0	0	3978	928	32	3		3	CSMD1	8	4757507	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1709935	4757507	141606515	248	54732											
PRSS55	203074	broad.mit.edu	37	chr8	10390293	10390293	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggaagtgaggggctgcAgagcctgtgaaggaagggga	20	4	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10390293	G	G	10390293	1	3	50	0	1	0	0	0	0	0	0	0	12740	203	7	5		5	PRSS55	8	10390293	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	5632786	10390293	135973729	249	54733											
C8orf80	389643	broad.mit.edu	37	chr8	27925799	27925799	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagagctcacttgtacaatGcaggaagtacatatgctttc	8	10	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27925799	A	A	27925799	2	1	50	1	0	0	0	0	0	0	0	1	2465	1311	46	4		4	C8orf80	8	27925799	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	17535506	27925799	118438223	250	54734											
TMEM66	51669	broad.mit.edu	37	chr8	29927124	29927124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcactaacctcacaccCgctctatttatggccactgc	7	15	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29927124	A	A	29927124	1	1	50	0	1	0	0	0	0	0	0	0	16318	667	23	1		1	TMEM66	8	29927124	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2001325	29927124	116436898	251	54735											
KCNU1	157855	broad.mit.edu	37	chr8	36766765	36766765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgggaggagaagagggggCctacttggagggattctcat	17	5	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36766765	A	A	36766765	1	1	50	0	1	0	0	0	0	0	0	0	8163	754	26	3		3	KCNU1	8	36766765	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6839641	36766765	109597257	252	54736											
ANK1	286	broad.mit.edu	37	chr8	41522670	41522670	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattccccctccctatctctCtggtttgctctcttggtctc	5	17	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41522670	G	G	41522670	1	3	50	0	1	0	0	0	0	0	0	0	620	928	32	4		4	ANK1	8	41522670	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4755905	41522670	104841352	253	54737											
CPNE3	8895	broad.mit.edu	37	chr8	87563479	87563479	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatggtaagttaaaaaataaAcatgaagacttcaaatggaa	7	3	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87563479	T	T	87563479	1	4	50	0	1	0	0	0	0	0	0	0	3845	58	2	5		5	CPNE3	8	87563479	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	46040809	87563479	58800543	254	54738											
ZFPM2	23414	broad.mit.edu	37	chr8	106431376	106431376	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattctttttcaagggccGcttgaagatgccattgaaga	10	8	2	5			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106431376	T	T	106431376	2	4	50	1	0	0	0	0	0	0	0	1	17784	1074	38	3		3	ZFPM2	8	106431376	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	18867897	106431376	39932646	255	54739											
KCNQ3	3786	broad.mit.edu	37	chr8	133317588	133317588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagataagaccactgactGtcctagaaaattgcttcatt	6	10	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133317588	T	T	133317588	1	4	50	0	1	0	0	0	0	0	0	0	8154	1392	48	3		3	KCNQ3	8	133317588	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	26886212	133317588	13046434	256	54740											
TG	7038	broad.mit.edu	37	chr8	133906050	133906050	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggagagtttcctggtGgccaagggaatccggctgag	18	8	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133906050	A	A	133906050	2	1	50	1	0	0	0	0	0	0	0	1	15936	1335	47	4		4	TG	8	133906050	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	588462	133906050	12457972	257	54741											
KIAA0020	9933	broad.mit.edu	37	chr9	2820023	2820023	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaggattacttactgataTgattatctgcttcacaagct	6	8	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2820023	C	C	2820023	3	2	50	1	0	0	0	0	1	0	0	0	8222	1464	51	5	706	5	KIAA0020	9	2820023	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08		2820023	138393408	258	54742											
RLN1	6013	broad.mit.edu	37	chr9	5339753	5339753	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggcgaggcatcctgggCctggtctctcctggaggtct	14	12	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5339753	A	A	5339753	1	1	50	0	1	0	0	0	0	0	0	0	13502	754	26	3		3	RLN1	9	5339753	5'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2519730	5339753	135873678	259	54743											
PTPRD	5789	broad.mit.edu	37	chr9	8528597	8528597	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacaagaccctacctgatcGtaactgcttaatacgaccat	5	12	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8528597	T	T	8528597	2	4	50	1	0	0	0	0	0	0	0	1	12907	1153	40	3		3	PTPRD	9	8528597	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3188844	8528597	132684834	260	54744											
PTPRD	5789	broad.mit.edu	37	chr9	8713619	8713619	+	Intron	DEL	G	-	-													taccgggacctgaccaccgcGggcgctgtcacccagtgcta							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8713619	-	-	8713619	6	5	50	0	1	1	0	1	0	0	0	0	12907	1131	39	0		0	PTPRD	9	8713619	Intron	DEL	G	TCGA-17-Z017-01A-01W-0746-08	185022	8713619	132499812	261	54745											
IFNA14	3448	broad.mit.edu	37	chr9	21239770	21239770	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaattcaaagtcatgtctGtccttcaggcaggagaaagg	12	7	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21239770	C	C	21239770	3	2	50	1	0	0	0	0	1	0	0	0	7604	1368	48	4	408	4	IFNA14	9	21239770	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	12526151	21239770	119973661	262	54746											
TAF1L	138474	broad.mit.edu	37	chr9	32630458	32630458	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcacccagcctaccttggCcctggcacatctgtttttct	6	17	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32630458	G	G	32630458	3	3	50	1	0	0	0	0	1	0	0	0	15642	739	26	4	364	4	TAF1L	9	32630458	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	11390688	32630458	108582973	263	54747											
MAMDC2	256691	broad.mit.edu	37	chr9	72723099	72723099	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgcaaacaaaaattgatcCttttcctatgttcctttctc	4	10	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72723099	G	G	72723099	1	3	50	0	1	0	0	0	0	0	0	0	9295	696	24	4		4	MAMDC2	9	72723099	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	40092641	72723099	68490332	264	54748											
TMEM2	23670	broad.mit.edu	37	chr9	74312964	74312964	+	Frame_Shift_Del	DEL	C	-	-													ggcatccgcttgaccactgaCggctttctgtagtactgtgg					rs142314012	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74312964	-	-	74312964	7	5	50	1	0	1	0	1	0	0	0	0	16244	523	19	0	637	0	TMEM2	9	74312964	Frame_Shift_Del	DEL	C	TCGA-17-Z017-01A-01W-0746-08	1589865	74312964	66900467	265	54749											
ROR2	4920	broad.mit.edu	37	chr9	94486414	94486414	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggccttctgcttgggccCcacgtagcgggcgttgctca	15	14	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94486414	A	A	94486414	3	1	50	1	0	0	0	0	1	0	0	0	13638	623	22	2	473	2	ROR2	9	94486414	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	20173450	94486414	46727017	266	54750											
WNK2	65268	broad.mit.edu	37	chr9	95972523	95972523	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgagatttggggaggaCagtggggtgtcgagggaggt	20	5	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95972523	T	T	95972523	1	4	50	0	1	0	0	0	0	0	0	0	17505	493	17	4		4	WNK2	9	95972523	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1486109	95972523	45240908	267	54751											
KIAA1529	57653	broad.mit.edu	37	chr9	100127887	100127887	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacttggaaagttctgttcAtgtggttttgtccatgtttg	11	6	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100127887	T	T	100127887	1	4	50	0	1	0	0	0	0	0	0	0	8310	232	8	5		5	KIAA1529	9	100127887	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	4155364	100127887	41085544	268	54752											
TMEFF1	8577	broad.mit.edu	37	chr9	103323538	103323538	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggatcttatctaaccccCtatctgataaattttctttt	3	11	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103323538	G	G	103323538	1	3	50	0	1	0	0	0	0	0	0	0	16136	696	24	4		4	TMEFF1	9	103323538	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3195651	103323538	37889893	269	54753											
OR13C3	138803	broad.mit.edu	37	chr9	107298670	107298670	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcatgccaagaagcagaCattctgttgaccccattgca	7	13	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107298670	T	T	107298670	3	4	50	1	0	0	0	0	1	0	0	0	11029	478	17	4	622	4	OR13C3	9	107298670	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3975132	107298670	33914761	270	54754											
SVEP1	79987	broad.mit.edu	37	chr9	113139414	113139414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctgttgacacatatgtGctctgtttggtgtggacaag	11	8	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113139414	T	T	113139414	1	4	50	0	1	0	0	0	0	0	0	0	15538	1334	46	3		3	SVEP1	9	113139414	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5840744	113139414	28074017	271	54755											
DENND1A	57706	broad.mit.edu	37	chr9	126663639	126663639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgtccccaacatcttaCagactattccctctctcctg	5	15	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126663639	A	A	126663639	1	1	50	0	1	0	0	0	0	0	0	0	4466	493	17	3		3	DENND1A	9	126663639	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	13524225	126663639	14549792	272	54756											
OBP2B	29989	broad.mit.edu	37	chr9	136083636	136083636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctcccaggacacccatGgcccatcctcagctcacctg	9	19	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136083636	T	T	136083636	1	4	50	0	1	0	0	0	0	0	0	0	10906	1363	47	2		2	OBP2B	9	136083636	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	9419997	136083636	5129795	273	54757											
OBP2A	29991	broad.mit.edu	37	chr9	138439035	138439035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttccaggagggaggatcGgtgcatccagaagaaaatcc	13	8	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138439035	T	T	138439035	3	4	50	1	0	0	0	0	1	0	0	0	10905	1116	39	1	228	1	OBP2A	9	138439035	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2355399	138439035	2774396	274	54758											
NET1	10276	broad.mit.edu	37	chr10	5498644	5498644	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccacaagcagcagtggtTcaactgtattcgagcggcca	11	11	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5498644	G	G	5498644	3	3	50	1	0	0	0	0	1	0	0	0	10433	1783	62	5	1621	5	NET1	10	5498644	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08		5498644	130036103	275	54759											
ACBD5	91452	broad.mit.edu	37	chr10	27508756	27508756	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccattaacggttttggcgTttggagtagaagtgagaaca	12	5	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27508756	A	A	27508756	3	1	50	1	0	0	0	0	1	0	0	0	125	1725	60	5	1088	5	ACBD5	10	27508756	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	22010112	27508756	108025991	276	54760											
SVIL	6840	broad.mit.edu	37	chr10	29972700	29972700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccttaggatccaaacaCagcctgtgccaggccctcac	9	15	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29972700	A	A	29972700	1	1	50	0	1	0	0	0	0	0	0	0	15539	493	17	3		3	SVIL	10	29972700	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2463944	29972700	105562047	277	54761											
ZEB1	6935	broad.mit.edu	37	chr10	31791480	31791480	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttctttccctctttaaagGattcttgtttctaccattct	4	10	5	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31791480	T	T	31791480	1	4	50	0	1	0	0	0	0	0	0	0	17749	1189	41	3		3	ZEB1	10	31791480	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1818780	31791480	103743267	278	54762											
PARD3	56288	broad.mit.edu	37	chr10	34661507	34661507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatacagactgaccaaagCcatcttcaacacacagggac	6	12	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34661507	A	A	34661507	1	1	50	0	1	0	0	0	0	0	0	0	11537	754	26	3		3	PARD3	10	34661507	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2870027	34661507	100873240	279	54763											
ZNF485	220992	broad.mit.edu	37	chr10	44101069	44101069	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagttcttttgtcacaggCcccgttttgctccaggcagt	9	13	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44101069	A	A	44101069	1	1	50	0	1	0	0	0	0	0	0	0	18065	754	26	3		3	ZNF485	10	44101069	5'Flank	SNP	C	TCGA-17-Z017-01A-01W-0746-08	9439562	44101069	91433678	280	54764											
C10orf72	196740	broad.mit.edu	37	chr10	50256688	50256688	+	Intron	DEL	A	-	-													tttgttgcaaaagagaaaggAaaaaaaaaaacccacaatag							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50256688	-	-	50256688	6	5	50	0	1	1	0	1	0	0	0	0	1626	261	9	0		0	C10orf72	10	50256688	Intron	DEL	A	TCGA-17-Z017-01A-01W-0746-08	6155619	50256688	85278059	281	54765											
C10orf71	118461	broad.mit.edu	37	chr10	50531470	50531470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggagagaaaggacacaGctggaaccgtcccagaaagc	13	10	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50531470	T	T	50531470	3	4	50	1	0	0	0	0	1	0	0	0	1625	971	34	3	882	3	C10orf71	10	50531470	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	274782	50531470	85003277	282	54766											
SLC18A3	6572	broad.mit.edu	37	chr10	50819611	50819611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcacgggctcgggccaaCctgccagtgggcactcccat	13	16	0	0	rs145315435	byFrequency	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50819611	A	A	50819611	3	1	50	1	0	0	0	0	1	0	0	0	14540	506	18	3	827	3	SLC18A3	10	50819611	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	288141	50819611	84715136	283	54767											
CHAT	1103	broad.mit.edu	37	chr10	50901684	50901684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccaacacccagaaagtGcctaccagggcagttgagtg	14	11	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50901684	T	T	50901684	1	4	50	0	1	0	0	0	0	0	0	0	3344	1334	46	3		3	CHAT	10	50901684	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	82073	50901684	84633063	284	54768											
LRRTM3	347731	broad.mit.edu	37	chr10	68688316	68688316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgccccccctccccttcCctctccctctcactttgctg	4	23	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68688316	A	A	68688316	1	1	50	0	1	0	0	0	0	0	0	0	9128	638	22	2		2	LRRTM3	10	68688316	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	17786632	68688316	66846431	285	54769											
CDH23	64072	broad.mit.edu	37	chr10	73511647	73511647	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaccagaatggaaggtcatCtgtgctgtccggagcgtgaa	14	8	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73511647	G	G	73511647	1	3	50	0	1	0	0	0	0	0	0	0	3138	928	32	4		4	CDH23	10	73511647	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4823331	73511647	62023100	286	54770											
USP54	159195	broad.mit.edu	37	chr10	75300682	75300682	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagacattagttccacactGtgaatttcatatttttgggc	7	9	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75300682	A	A	75300682	1	1	50	0	1	0	0	0	0	0	0	0	17212	1392	48	4		4	USP54	10	75300682	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1789035	75300682	60234065	287	54771											
PLAU	5328	broad.mit.edu	37	chr10	75676383	75676383	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggttgtcatttttgcagtAgagtcatctccatcagctgt	9	9	4	1	rs142117323	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75676383	G	G	75676383	1	3	50	0	1	0	0	0	0	0	0	0	12117	435	15	5		5	PLAU	10	75676383	3'UTR	SNP	A	TCGA-17-Z017-01A-01W-0746-08	375701	75676383	59858364	288	54772											
C10orf11	83938	broad.mit.edu	37	chr10	77700245	77700245	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgtgccttccacgaagccAttctggtttccaccaactaa	7	15	1	0	rs115133269	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77700245	G	G	77700245	1	3	50	0	1	0	0	0	0	0	0	0	1593	232	8	5		5	C10orf11	10	77700245	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	2023862	77700245	57834502	289	54773											
PAX2	5076	broad.mit.edu	37	chr10	102568895	102568895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactccctcccagccctgaCccctgggcttgatgaagtca	9	16	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102568895	A	A	102568895	3	1	50	1	0	0	0	0	1	0	0	0	11573	507	18	3	920	3	PAX2	10	102568895	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	24868650	102568895	32965852	290	54774											
PDZD7	79955	broad.mit.edu	37	chr10	102783311	102783311	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctacccatggtggtgctctCcaggctcagcccattcacct	9	16	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102783311	A	A	102783311	4	1	50	1	0	0	0	0	0	1	0	0	11798	864	30	3	1157	3	PDZD7	10	102783311	Nonsense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	214416	102783311	32751436	291	54775											
CCDC147	159686	broad.mit.edu	37	chr10	106112557	106112557	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccccttatgaaacgctgtGcagtactcagaagcaatgaa	9	10	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106112557	T	T	106112557	1	4	50	0	1	0	0	0	0	0	0	0	2807	1334	46	3		3	CCDC147	10	106112557	5'Flank	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3329246	106112557	29422190	292	54776											
ADD3	120	broad.mit.edu	37	chr10	111890202	111890202	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacagaaggagaacttgaaGagtataagaggacaatcgaa	11	5	1	5			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111890202	A	A	111890202	3	1	50	1	0	0	0	0	1	0	0	0	306	943	33	4	1736	4	ADD3	10	111890202	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5777645	111890202	23644545	293	54777											
ADD3	120	broad.mit.edu	37	chr10	111890285	111890285	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacctagggtaagccacactGataacaataaagtacctcac	6	11	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111890285	C	C	111890285	1	2	50	0	1	0	0	0	0	0	0	0	306	1305	45	4		4	ADD3	10	111890285	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	83	111890285	23644462	294	54778											
SHOC2	8036	broad.mit.edu	37	chr10	112724437	112724437	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattcaatgcgtttggacttAtccaagagatctatacacat	6	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112724437	T	T	112724437	3	4	50	1	0	0	0	0	1	0	0	0	14400	446	16	5	323	5	SHOC2	10	112724437	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	834152	112724437	22810310	295	54779											
KIAA1598	57698	broad.mit.edu	37	chr10	118708345	118708345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttacagtcatatttaggCacaggtgtaaaatgacacac	7	7	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118708345	T	T	118708345	1	4	50	0	1	0	0	0	0	0	0	0	8316	725	25	4		4	KIAA1598	10	118708345	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	5983908	118708345	16826402	296	54780											
TACC2	10579	broad.mit.edu	37	chr10	123974999	123975000	+	Intron	INS	-	C	C													ttgatcttgatggttttatgINSccccccccgggggaggtttt							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123975000	C	C	123974999	6	5	50	0	1	1	1	0	0	0	0	0	15621	1334	46	0		0	TACC2	10	123974999	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	5266654	123974999	11559748	297	54781											
ADAM12	8038	broad.mit.edu	37	chr10	127812212	127812212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccatggctgcagctcccGccatgaccccactgtccaag	9	17	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127812212	T	T	127812212	1	4	50	0	1	0	0	0	0	0	0	0	236	1102	38	3		3	ADAM12	10	127812212	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3837213	127812212	7722535	298	54782											
ADAM12	8038	broad.mit.edu	37	chr10	127833310	127833310	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatctgttctcagaatctAcaagggatttcagaaggaac	8	9	5	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127833310	G	G	127833310	1	3	50	0	1	0	0	0	0	0	0	0	236	406	14	5		5	ADAM12	10	127833310	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	21098	127833310	7701437	299	54783											
ADAM12	8038	broad.mit.edu	37	chr10	127846867	127846867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagagcaccgggagaggaGgcacagagcacagggggagg	19	9	0	3	rs80101828	byFrequency;by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127846867	T	T	127846867	1	4	50	0	1	0	0	0	0	0	0	0	236	1015	35	2		2	ADAM12	10	127846867	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	13557	127846867	7687880	300	54784											
ADAM12	8038	broad.mit.edu	37	chr10	128002178	128002181	+	Intron	DEL	ATCT	-	-													ggtgtgagccccatccatccAtctgtccatctgtccatcca					rs5788780		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128002181	-	-	128002178	6	5	50	0	1	1	0	1	0	0	0	0	236	232	8	0		0	ADAM12	10	128002178	Intron	DEL	ATCT	TCGA-17-Z017-01A-01W-0746-08	155311	128002178	7532569	301	54785											
DOCK1	1793	broad.mit.edu	37	chr10	128788711	128788711	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctgattgggtttttccCcgtatagcaagataacaggg	10	8	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128788711	T	T	128788711	1	4	50	0	1	0	0	0	0	0	0	0	4724	638	22	4		4	DOCK1	10	128788711	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	786533	128788711	6746036	302	54786											
PTPRE	5791	broad.mit.edu	37	chr10	129868648	129868648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgtcctccctggagaaGcacctgcagaccatgcacgg	12	14	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129868648	T	T	129868648	3	4	50	1	0	0	0	0	1	0	0	0	12908	962	34	3	1312	3	PTPRE	10	129868648	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1079937	129868648	5666099	303	54787											
PAOX	196743	broad.mit.edu	37	chr10	135202325	135202359	+	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	-	-													ggagagctgggctggacactGtcatcccggggctctctttc					rs144417516	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135202359	-	-	135202325	6	5	50	0	1	1	0	1	0	0	0	0	11517	1392	48	0		0	PAOX	10	135202325	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	TCGA-17-Z017-01A-01W-0746-08	5333677	135202325	332422	304	54788											
OR51B5	282763	broad.mit.edu	37	chr11	5364598	5364598	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagtacatgggctcatgaaGattgtgatcttccttaatga	10	6	2	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5364598	C	C	5364598	3	2	50	1	0	0	0	0	1	0	0	0	11185	942	33	4	785	4	OR51B5	11	5364598	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08		5364598	129641918	305	54789											
DCHS1	8642	broad.mit.edu	37	chr11	6647186	6647186	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctcacggtccaggatggcTgtggtagtgatagtgcctgt	14	8	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6647186	A	A	6647186	2	1	50	1	0	0	0	0	0	0	0	1	4320	1567	55	5		5	DCHS1	11	6647186	Silent	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1282588	6647186	128359330	306	54790											
OR5P2	120065	broad.mit.edu	37	chr11	7818426	7818426	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactcgaaggattggatcatCtgttaagcccaataggatga	11	7	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7818426	G	G	7818426	3	3	50	1	0	0	0	0	1	0	0	0	11272	913	32	4	908	4	OR5P2	11	7818426	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1171240	7818426	127188090	307	54791											
MRVI1	10335	broad.mit.edu	37	chr11	10605073	10605073	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcctctgtgtaatgttggGagccaagcacaggtttaaag	13	7	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10605073	T	T	10605073	1	4	50	0	1	0	0	0	0	0	0	0	9947	1189	41	3		3	MRVI1	11	10605073	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2786647	10605073	124401443	308	54792											
NAV2	89797	broad.mit.edu	37	chr11	19462993	19462993	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggacacacacacacacacAcgcacacacacacacacaca	4	18	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19462993	G	G	19462993	1	3	50	0	1	0	0	0	0	0	0	0	10278	174	6	5		5	NAV2	11	19462993	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	8857920	19462993	115543523	309	54793											
NELL1	4745	broad.mit.edu	37	chr11	20805255	20805255	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagagatccatgcagctcctCatgtgagtgagaaattaatt	10	7	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20805255	A	A	20805255	3	1	50	1	0	0	0	0	1	0	0	0	10428	826	29	3	224	3	NELL1	11	20805255	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1342262	20805255	114201261	310	54794											
NELL1	4745	broad.mit.edu	37	chr11	21451649	21451649	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagcagcaaataatgtgaatCcataagcaagtacatggaag	9	6	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21451649	T	T	21451649	1	4	50	0	1	0	0	0	0	0	0	0	10428	870	30	4		4	NELL1	11	21451649	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	646394	21451649	113554867	311	54795											
MPPED2	744	broad.mit.edu	37	chr11	30490385	30490385	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctgatcccccagattcttCcagggacccttgtaattcac	6	15	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30490385	A	A	30490385	1	1	50	0	1	0	0	0	0	0	0	0	9836	870	30	3		3	MPPED2	11	30490385	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	9038736	30490385	104516131	312	54796											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45924191	45924191	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgcagaggcccccagaCgctgcagagcccacctccgc	11	19	0	3	rs138625751		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45924191	T	T	45924191	2	4	50	1	0	0	0	0	0	0	0	1	9376	535	19	4		4	MAPK8IP1	11	45924191	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	15433806	45924191	89082325	313	54797											
LRP4	4038	broad.mit.edu	37	chr11	46908161	46908161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacacagacgctcacctgcGtgacatctggttcaatcaca	8	13	4	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46908161	A	A	46908161	1	1	50	0	1	0	0	0	0	0	0	0	9046	1160	40	4		4	LRP4	11	46908161	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	983970	46908161	88098355	314	54798											
OR5I1	10798	broad.mit.edu	37	chr11	55703852	55703852	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaactcagtgaccaacgTgtagtttctatctgtaaatt	6	7	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55703852	A	A	55703852	3	1	50	1	0	0	0	0	1	0	0	0	11258	1696	59	5	922	5	OR5I1	11	55703852	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	8795691	55703852	79302664	315	54799											
OR5R1	219479	broad.mit.edu	37	chr11	56185534	56185534	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggctgaggaaatagtacaTaggtgtgtggagtcgagtat	16	3	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56185534	A	A	56185534	3	1	50	1	0	0	0	0	1	0	0	0	11274	1406	49	5	801	5	OR5R1	11	56185534	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	481682	56185534	78820982	316	54800											
OR9Q2	219957	broad.mit.edu	37	chr11	57957847	57957847	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgtgttgaagttgagtGccgacatgtaagacattcaa	11	5	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57957847	C	C	57957847	1	2	50	0	1	0	0	0	0	0	0	0	11350	1334	46	4		4	OR9Q2	11	57957847	5'Flank	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1772313	57957847	77048669	317	54801											
TCN1	6947	broad.mit.edu	37	chr11	59620776	59620776	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatatagggcccccatgaGcgctcctccattgtgaaact	10	12	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59620776	T	T	59620776	2	4	50	1	0	0	0	0	0	0	0	1	15828	958	34	3		3	TCN1	11	59620776	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1662929	59620776	75385740	318	54802											
POLD3	10714	broad.mit.edu	37	chr11	74331020	74331020	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctacttcatgaacagccTaaatgccagcaaaaaatcat	5	11	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74331020	A	A	74331020	1	1	50	0	1	0	0	0	0	0	0	0	12287	1537	53	5		5	POLD3	11	74331020	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	14710244	74331020	60675496	319	54803											
DLG2	1740	broad.mit.edu	37	chr11	83357652	83357652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcactcagcctcctctGgatcttttctggttccttcg	8	14	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83357652	T	T	83357652	1	4	50	0	1	0	0	0	0	0	0	0	4595	1363	47	2		2	DLG2	11	83357652	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	9026632	83357652	51648864	320	54804											
CNTN5	53942	broad.mit.edu	37	chr11	100069148	100069149	+	Intron	DEL	AC	-	-													ctgtatgtatgtctgtctagAcacacacacacacacacaat					rs145416402		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100069149	-	-	100069148	6	5	50	0	1	1	0	1	0	0	0	0	3676	290	10	0		0	CNTN5	11	100069148	Intron	DEL	AC	TCGA-17-Z017-01A-01W-0746-08	16711496	100069148	34937368	321	54805											
ATM	472	broad.mit.edu	37	chr11	108175416	108175416	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctaggtgaaaactgacttTtgtcagactgtacttccata	7	8	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108175416	G	G	108175416	3	3	50	1	0	0	0	0	1	0	0	0	1113	1838	64	5	5653	5	ATM	11	108175416	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	8106268	108175416	26831100	322	54806											
CBL	867	broad.mit.edu	37	chr11	119145632	119145632	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtatgacgaagtgaaagctCggctccagaaattcattcac	9	10	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119145632	T	T	119145632	3	4	50	1	0	0	0	0	1	0	0	0	2726	875	31	4	856	4	CBL	11	119145632	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	10970216	119145632	15860884	323	54807											
TRIM29	23650	broad.mit.edu	37	chr11	120007908	120007908	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtgagagaggagaggcctgGaggggcaggaggggccccag	23	7	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120007908	C	C	120007908	1	2	50	0	1	0	0	0	0	0	0	0	16627	1189	41	4		4	TRIM29	11	120007908	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	862276	120007908	14998608	324	54808											
KIRREL3	84623	broad.mit.edu	37	chr11	126824318	126824318	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcattgctgataacatgaAggatctgtaaattacaaatc	6	6	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126824318	G	G	126824318	1	3	50	0	1	0	0	0	0	0	0	0	8397	87	3	5		5	KIRREL3	11	126824318	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	6816410	126824318	8182198	325	54809											
VWF	7450	broad.mit.edu	37	chr12	6199418	6199418	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggcgtgagccaccgtgccCggccgaaaatctgtcctctc	11	16	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6199418	G	G	6199418	1	3	50	0	1	0	0	0	0	0	0	0	17373	667	23	4		4	VWF	12	6199418	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08		6199418	127652477	326	54810											
ZNF384	171017	broad.mit.edu	37	chr12	6786355	6786355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtcacacagcaaattcgTggtggagccgggaactgaat	14	8	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6786355	C	C	6786355	1	2	50	0	1	0	0	0	0	0	0	0	18001	1711	59	5		5	ZNF384	12	6786355	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	586937	6786355	127065540	327	54811											
CD163L1	283316	broad.mit.edu	37	chr12	7586213	7586213	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcacacacagtcccccactGtccctggaatttcacctcca	4	18	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7586213	C	C	7586213	3	2	50	1	0	0	0	0	1	0	0	0	2998	1386	48	4	4227	4	CD163L1	12	7586213	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	799858	7586213	126265682	328	54812											
APOBEC1	339	broad.mit.edu	37	chr12	7803594	7803594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcttctttttgcatcaaCatttgtgtccctaaagtgac	7	9	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7803594	A	A	7803594	1	1	50	0	1	0	0	0	0	0	0	0	789	493	17	3		3	APOBEC1	12	7803594	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	217381	7803594	126048301	329	54813											
CLEC4A	50856	broad.mit.edu	37	chr12	8288251	8288251	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctactttatttctactgaAtcagcatcttggcaagacag	7	9	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8288251	G	G	8288251	2	3	50	1	0	0	0	0	0	0	0	1	3544	98	4	5		5	CLEC4A	12	8288251	Silent	SNP	A	TCGA-17-Z017-01A-01W-0746-08	484657	8288251	125563644	330	54814											
STYK1	55359	broad.mit.edu	37	chr12	10772762	10772762	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaagcatgctatagttgTagaagaggctctccactctg	9	9	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10772762	C	C	10772762	3	2	50	1	0	0	0	0	1	0	0	0	15477	1638	57	5	22	5	STYK1	12	10772762	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	2484511	10772762	123079133	331	54815											
GRIN2B	2904	broad.mit.edu	37	chr12	14018911	14018911	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtgatgatgctctttgGgtcggtctcattcatggcta	14	8	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14018911	A	A	14018911	3	1	50	1	0	0	0	0	1	0	0	0	6846	1232	43	4	4270	4	GRIN2B	12	14018911	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3246149	14018911	119832984	332	54816											
EPS8	2059	broad.mit.edu	37	chr12	15822286	15822286	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagctcccagacaatctgcTtaaagaagaaacaaaaattt	5	8	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15822286	A	A	15822286	1	1	50	0	1	0	0	0	0	0	0	0	5236	1624	56	5		5	EPS8	12	15822286	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1803375	15822286	118029609	333	54817											
KRAS	3845	broad.mit.edu	37	chr12	25398282	25398282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggcactcttgcctacgcCaccagctccaactaccacaa	5	18	1	0	rs121913535		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398282	A	A	25398282	3	1	50	1	0	0	0	0	1	0	0	0	8509	594	21	2	669	2	KRAS	12	25398282	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	9575996	25398282	108453613	334	54818											
KRAS	3845	broad.mit.edu	37	chr12	25398321	25398321	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtttatattcagtcatttTcagcaggccttataataaaa	5	6	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25398321	C	C	25398321	1	2	50	0	1	0	0	0	0	0	0	0	8509	1798	62	5		5	KRAS	12	25398321	5'UTR	SNP	T	TCGA-17-Z017-01A-01W-0746-08	39	25398321	108453574	335	54819											
ARNTL2	56938	broad.mit.edu	37	chr12	27571174	27571174	+	Intron	DEL	C	-	-													accattttcgtttatcaaaaCccccctcttaatcactatgt							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27571174	-	-	27571174	6	5	50	0	1	1	0	1	0	0	0	0	972	522	18	0		0	ARNTL2	12	27571174	Intron	DEL	C	TCGA-17-Z017-01A-01W-0746-08	2172853	27571174	106280721	336	54820											
DENND5B	160518	broad.mit.edu	37	chr12	31737076	31737076	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatacaagcaaaaggatgTgcacaggaattttaggacag	11	5	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31737076	A	A	31737076	1	1	50	0	1	0	0	0	0	0	0	0	4477	1711	59	5		5	DENND5B	12	31737076	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	4165902	31737076	102114819	337	54821											
KRT4	3851	broad.mit.edu	37	chr12	53205732	53205732	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggttccatttggtctccagGaccttattctgttgctctaa	8	10	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53205732	T	T	53205732	2	4	50	1	0	0	0	0	0	0	0	1	8548	1161	41	3		3	KRT4	12	53205732	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	21468656	53205732	80646163	338	54822											
FAM19A2	338811	broad.mit.edu	37	chr12	62173928	62173929	+	Intron	INS	-	A	A													catatggaagagagggcaggINSaagcagattaaaatcaggag					rs148724922	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62173929	A	A	62173928	6	5	50	0	1	1	1	0	0	0	0	0	5579	1189	41	0		0	FAM19A2	12	62173928	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	8968196	62173928	71677967	339	54823											
SRGAP1	57522	broad.mit.edu	37	chr12	64437113	64437113	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaaggactttcagggtcAtttgtatatgtggaataaat	11	4	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64437113	G	G	64437113	1	3	50	0	1	0	0	0	0	0	0	0	15263	232	8	5		5	SRGAP1	12	64437113	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	2263185	64437113	69414782	340	54824											
PTPRR	5801	broad.mit.edu	37	chr12	71158895	71158895	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatttctgcatttccatctGaggtaccaggttcatctcac	7	11	4	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71158895	A	A	71158895	1	1	50	0	1	0	0	0	0	0	0	0	12918	1305	45	4		4	PTPRR	12	71158895	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	6721782	71158895	62693000	341	54825											
TRHDE	29953	broad.mit.edu	37	chr12	72776997	72776997	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttcataagaactgtcagAggcatggggtgttactttaa	10	5	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72776997	T	T	72776997	1	4	50	0	1	0	0	0	0	0	0	0	16603	319	11	5		5	TRHDE	12	72776997	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1618102	72776997	61074898	342	54826											
PAH	5053	broad.mit.edu	37	chr12	103298583	103298583	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttgggagagatgtaaacAcccgagtagactatgcacac	11	8	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103298583	T	T	103298583	1	4	50	0	1	0	0	0	0	0	0	0	11488	174	6	5		5	PAH	12	103298583	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	30521586	103298583	30553312	343	54827											
RFX4	5992	broad.mit.edu	37	chr12	107080945	107080946	+	Intron	INS	-	TC	TC													tctctctctctctgtctctaINStctctctctctctctcacac					rs57545359		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	107080946	TC	TC	107080945	6	5	50	0	1	1	1	0	0	0	0	0	13373	464	16	0		0	RFX4	12	107080945	Intron	INS	-	TCGA-17-Z017-01A-01W-0746-08	3782362	107080945	26770950	344	54828											
RPH3A	22895	broad.mit.edu	37	chr12	113212624	113212624	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagtaggaaaaatagcagTaggaaaaatagtaggaaaaa	11	2	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113212624	G	G	113212624	1	3	50	0	1	0	0	0	0	0	0	0	13662	1653	57	5		5	RPH3A	12	113212624	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	6131679	113212624	20639271	345	54829											
TMEM132B	114795	broad.mit.edu	37	chr12	125873315	125873315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtctgccatccctgctcGtcttctggctcctgccccag	8	17	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125873315	T	T	125873315	1	4	50	0	1	0	0	0	0	0	0	0	16169	1160	40	3		3	TMEM132B	12	125873315	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	12660691	125873315	7978580	346	54830											
TMEM132B	114795	broad.mit.edu	37	chr12	125959303	125959303	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggcacagctggatccagGgggacctgacctgctgtcag	14	11	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125959303	A	A	125959303	1	1	50	0	1	0	0	0	0	0	0	0	16169	1247	43	4		4	TMEM132B	12	125959303	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	85988	125959303	7892592	347	54831											
TMEM132D	121256	broad.mit.edu	37	chr12	129694579	129694579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaacattcttcttcttccCagtttacagatggcacagag	6	11	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129694579	A	A	129694579	1	1	50	0	1	0	0	0	0	0	0	0	16170	609	21	2		2	TMEM132D	12	129694579	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3735276	129694579	4157316	348	54832											
GOLGA3	2802	broad.mit.edu	37	chr12	133353502	133353502	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagtcacccagggcaccCgtgagtccagccctgcaagt	12	14	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133353502	G	G	133353502	1	3	50	0	1	0	0	0	0	0	0	0	6618	667	23	4		4	GOLGA3	12	133353502	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3658923	133353502	498393	349	54833											
CRYL1	51084	broad.mit.edu	37	chr13	20987407	20987407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatggaattcccatcctggCcccagatgcataccttctgc	8	14	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20987407	A	A	20987407	1	1	50	0	1	0	0	0	0	0	0	0	3952	754	26	3		3	CRYL1	13	20987407	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08		20987407	94182471	350	54834											
MTMR6	9107	broad.mit.edu	37	chr13	25835922	25835922	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatccagagagtggctgacTacatcgacaaatggcagcct	11	10	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25835922	A	A	25835922	3	1	50	1	0	0	0	0	1	0	0	0	10041	1522	53	5	1291	5	MTMR6	13	25835922	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	4848515	25835922	89333956	351	54835											
B3GALTL	145173	broad.mit.edu	37	chr13	31848718	31848718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagttttgtaccaatgacGtggacttctactgtgctacc	9	10	1	2	rs34830061	byFrequency;by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31848718	T	T	31848718	3	4	50	1	0	0	0	0	1	0	0	0	1257	1145	40	3	767	3	B3GALTL	13	31848718	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	6012796	31848718	83321160	352	54836											
BRCA2	675	broad.mit.edu	37	chr13	32906434	32906434	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaacatcagggaattcAtttaaagtaaatagctgcaa	8	5	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32906434	T	T	32906434	2	4	50	1	0	0	0	0	0	0	0	1	1508	204	8	5		5	BRCA2	13	32906434	Silent	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1057716	32906434	82263444	353	54837											
FGF14	2259	broad.mit.edu	37	chr13	102454253	102454253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaggtgacaccaagaaacCaaagggtaagatgtctgctt	10	7	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102454253	A	A	102454253	1	1	50	0	1	0	0	0	0	0	0	0	5900	609	21	2		2	FGF14	13	102454253	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	69547819	102454253	12715625	354	54838											
DCUN1D2	55208	broad.mit.edu	37	chr13	114138487	114138487	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacaaagccttgctcttcaTcagttacaaagactgcacag	7	11	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114138487	A	A	114138487	1	1	50	0	1	0	0	0	0	0	0	0	4347	1450	50	5		5	DCUN1D2	13	114138487	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	11684234	114138487	1031391	355	54839											
OR4N5	390437	broad.mit.edu	37	chr14	20611982	20611982	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacttctggtctttgtgCtagtcttaattttctacctt	5	10	5	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20611982	A	A	20611982	3	1	50	1	0	0	0	0	1	0	0	0	11173	796	28	3	90	3	OR4N5	14	20611982	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08		20611982	86737558	356	54840											
MYH6	4624	broad.mit.edu	37	chr14	23863473	23863473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtagagcttcatccagGgccaattcttgacccccatg	9	12	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23863473	T	T	23863473	3	4	50	1	0	0	0	0	1	0	0	0	10132	1232	43	2	3406	2	MYH6	14	23863473	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3251491	23863473	83486067	357	54841											
NFATC4	4776	broad.mit.edu	37	chr14	24839231	24839231	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaggcggcctcccgcttTggcctgggctccccgctgcc	13	17	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24839231	C	C	24839231	2	2	50	1	0	0	0	0	0	0	0	1	10460	1809	63	5		5	NFATC4	14	24839231	Silent	SNP	T	TCGA-17-Z017-01A-01W-0746-08	975758	24839231	82510309	358	54842											
AKAP6	9472	broad.mit.edu	37	chr14	33290934	33290934	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacaaccacatgccatttctGaaaaacaatccaaaggtcac	5	12	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33290934	T	T	33290934	2	4	50	1	0	0	0	0	0	0	0	1	455	1277	45	3		3	AKAP6	14	33290934	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8451703	33290934	74058606	359	54843											
EAPP	55837	broad.mit.edu	37	chr14	34994132	34994132	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggctaattctaggaataAggaacacaagatgaacctgg	10	6	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34994132	G	G	34994132	1	3	50	0	1	0	0	0	0	0	0	0	4917	87	3	5		5	EAPP	14	34994132	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1703198	34994132	72355408	360	54844											
LRFN5	145581	broad.mit.edu	37	chr14	42360493	42360493	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacttttctggtcaataatCtggctgctggaactatgtat	8	7	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42360493	A	A	42360493	3	1	50	1	0	0	0	0	1	0	0	0	9028	912	32	3	1432	3	LRFN5	14	42360493	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7366361	42360493	64989047	361	54845											
C14orf101	54916	broad.mit.edu	37	chr14	57078984	57078984	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatctgaaataggatccAgtatgtctgaaatactgctg	8	8	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57078984	G	G	57078984	3	3	50	1	0	0	0	0	1	0	0	0	1747	188	7	5	864	5	C14orf101	14	57078984	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	14718491	57078984	50270556	362	54846											
SYNE2	23224	broad.mit.edu	37	chr14	64468492	64468492	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggcattttgaatcgatGggtttaggtattaatgtgat	11	3	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64468492	A	A	64468492	1	1	50	0	1	0	0	0	0	0	0	0	15565	1363	47	4		4	SYNE2	14	64468492	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7389508	64468492	42881048	363	54847											
SPTB	6710	broad.mit.edu	37	chr14	65239517	65239517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccaggaggtctgcccaCatctcgttcagcccgtcctt	9	16	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65239517	A	A	65239517	3	1	50	1	0	0	0	0	1	0	0	0	15236	478	17	3	1765	3	SPTB	14	65239517	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	771025	65239517	42110023	364	54848											
MED6	10001	broad.mit.edu	37	chr14	71059804	71059804	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgcaaagacagaacctaTttttcagaacctaaattact	4	8	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71059804	C	C	71059804	1	2	50	0	1	0	0	0	0	0	0	0	9544	1508	52	5		5	MED6	14	71059804	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	5820287	71059804	36289736	365	54849											
PCNX	22990	broad.mit.edu	37	chr14	71502754	71502754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaaattttatgtaattGtttaataattcttttttttc	2	2	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71502754	T	T	71502754	1	4	50	0	1	0	0	0	0	0	0	0	11685	1392	48	3		3	PCNX	14	71502754	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	442950	71502754	35846786	366	54850											
NRXN3	9369	broad.mit.edu	37	chr14	78887267	78887267	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggggcaaaggctcaatGtagggaacttatgagagttg	14	6	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78887267	A	A	78887267	1	1	50	0	1	0	0	0	0	0	0	0	10762	1392	48	4		4	NRXN3	14	78887267	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7384513	78887267	28462273	367	54851											
NRXN3	9369	broad.mit.edu	37	chr14	79423671	79423671	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcggagaggaaaaagcCttaagttaaccgtggatgat	14	5	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79423671	T	T	79423671	3	4	50	1	0	0	0	0	1	0	0	0	10762	681	24	4	1265	4	NRXN3	14	79423671	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	536404	79423671	27925869	368	54852											
STON2	85439	broad.mit.edu	37	chr14	81864819	81864819	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaggggtatggtagtacGgtagacttgggtccagggtc	18	5	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81864819	T	T	81864819	1	4	50	0	1	0	0	0	0	0	0	0	15436	1131	39	1		1	STON2	14	81864819	5'UTR	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2441148	81864819	25484721	369	54853											
BTBD7	55727	broad.mit.edu	37	chr14	93792131	93792131	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccaacgatgctctaaaaGggaactattttgaatcctgt	7	10	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93792131	A	A	93792131	1	1	50	0	1	0	0	0	0	0	0	0	1556	1015	35	4		4	BTBD7	14	93792131	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	11927312	93792131	13557409	370	54854											
PPP4R4	57718	broad.mit.edu	37	chr14	94708066	94708066	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttattgtactttgattttCcctttttaaattttgttttc	3	5	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94708066	T	T	94708066	1	4	50	0	1	0	0	0	0	0	0	0	12506	870	30	4		4	PPP4R4	14	94708066	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	915935	94708066	12641474	371	54855											
CLMN	79789	broad.mit.edu	37	chr14	95682072	95682072	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatgctaaccagttttaccTggagggaagcaatttatgaa	9	7	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95682072	A	A	95682072	5	1	50	1	0	0	0	0	0	0	1	0	3574	1594	55	5	2721	5	CLMN	14	95682072	Splice_Site	SNP	T	TCGA-17-Z017-01A-01W-0746-08	974006	95682072	11667468	372	54856											
ATG2B	55102	broad.mit.edu	37	chr14	96761865	96761865	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctacttctgcagaaagactTgtgaagaaatccttcaggaa	8	8	3	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761865	A	A	96761865	2	1	50	1	0	0	0	0	0	0	0	1	1098	1799	63	5		5	ATG2B	14	96761865	Silent	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1079793	96761865	10587675	373	54857											
DYNC1H1	1778	broad.mit.edu	37	chr14	102505474	102505474	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaggctgcagaggtcacCaggaaagttgaggagacgga	17	6	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102505474	T	T	102505474	2	4	50	1	0	0	0	0	0	0	0	1	4881	581	21	4		4	DYNC1H1	14	102505474	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	5743609	102505474	4844066	374	54858											
OR4N4	283694	broad.mit.edu	37	chr15	22382663	22382663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctctatttatttctggGcaacttggccttcctggatg	8	13	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22382663	T	T	22382663	3	4	50	1	0	0	0	0	1	0	0	0	11172	1203	42	3	193	3	OR4N4	15	22382663	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08		22382663	80148729	375	54859											
RYR3	6263	broad.mit.edu	37	chr15	34129204	34129204	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggttgggctgtttggtAtaactaggccttcacacaac	12	8	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34129204	G	G	34129204	1	3	50	0	1	0	0	0	0	0	0	0	13881	464	16	5		5	RYR3	15	34129204	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	11746541	34129204	68402188	376	54860											
AQR	9716	broad.mit.edu	37	chr15	35210473	35210473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccataccttctccagaatagTactcagttgggacaatattt	6	10	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35210473	A	A	35210473	3	1	50	1	0	0	0	0	1	0	0	0	837	1638	57	5	3213	5	AQR	15	35210473	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1081269	35210473	67320919	377	54861											
TGM5	9333	broad.mit.edu	37	chr15	43560195	43560195	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgttcaagtcgtcaatggtCatctgatcaaatggtattaa	8	7	5	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43560195	A	A	43560195	1	1	50	0	1	0	0	0	0	0	0	0	15956	841	29	3		3	TGM5	15	43560195	5'Flank	SNP	C	TCGA-17-Z017-01A-01W-0746-08	8349722	43560195	58971197	378	54862											
HDC	3067	broad.mit.edu	37	chr15	50546714	50546714	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccgaagggctgtcctgcgTcgggcaactcacctggtcag	13	14	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50546714	A	A	50546714	1	1	50	0	1	0	0	0	0	0	0	0	7082	1682	58	5		5	HDC	15	50546714	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	6986519	50546714	51984678	379	54863											
AP4E1	23431	broad.mit.edu	37	chr15	51293309	51293309	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatgtaaaaatgtcagaatCtcaagctgcacttccttctg	6	9	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51293309	G	G	51293309	3	3	50	1	0	0	0	0	1	0	0	0	754	913	32	4	3260	4	AP4E1	15	51293309	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	746595	51293309	51238083	380	54864											
NEDD4	4734	broad.mit.edu	37	chr15	56148449	56148449	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatatttgtgatttgcctttGagtgacagctaaggtagtga	12	4	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56148449	T	T	56148449	1	4	50	0	1	0	0	0	0	0	0	0	10405	1305	45	3		3	NEDD4	15	56148449	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4855140	56148449	46382943	381	54865											
GCOM1	145781	broad.mit.edu	37	chr15	58006742	58006742	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttaaaggagatgcaAgcaaagctcgcagcgcaaaa	10	7	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58006742	T	T	58006742	3	4	50	1	0	0	0	0	1	0	0	0	6367	72	3	5	1673	5	GCOM1	15	58006742	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1858293	58006742	44524650	382	54866											
HERC1	8925	broad.mit.edu	37	chr15	63926227	63926227	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctaaaacacactcccccGtttctgggaccctttttctc	5	16	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63926227	A	A	63926227	1	1	50	0	1	0	0	0	0	0	0	0	7124	1160	40	4		4	HERC1	15	63926227	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5919485	63926227	38605165	383	54867											
STRA6	64220	broad.mit.edu	37	chr15	74473151	74473151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcccctggtctgaggctGtcctggggggctgccatggt	15	13	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74473151	T	T	74473151	3	4	50	1	0	0	0	0	1	0	0	0	15440	1368	48	3	199	3	STRA6	15	74473151	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	10546924	74473151	28058241	384	54868											
EFTUD1	79631	broad.mit.edu	37	chr15	82523322	82523322	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgctcaattctgaaagaaGaccaaatgttcatgttatta	7	6	3	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82523322	C	C	82523322	1	2	50	0	1	0	0	0	0	0	0	0	5000	957	33	4		4	EFTUD1	15	82523322	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8050171	82523322	20008070	385	54869											
BNC1	646	broad.mit.edu	37	chr15	83926700	83926700	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtaaaccagactgcccaTtcgacttgttcctttgaaga	9	10	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83926700	C	C	83926700	3	2	50	1	0	0	0	0	1	0	0	0	1480	1493	52	5	509	5	BNC1	15	83926700	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1403378	83926700	18604692	386	54870											
SH3GL3	6457	broad.mit.edu	37	chr15	84286809	84286809	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcatgttcatctgtactTtttgtctccatatcatgtgg	6	10	5	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84286809	A	A	84286809	1	1	50	0	1	0	0	0	0	0	0	0	14365	1856	64	5		5	SH3GL3	15	84286809	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	360109	84286809	18244583	387	54871											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84363878	84363878	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtgtggtgtgtgtgtgTgggggtatatttgtggtgta	19	1	0	0	rs116918999	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84363878	G	G	84363878	1	3	50	0	1	0	0	0	0	0	0	0	276	1711	59	5		5	ADAMTSL3	15	84363878	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	77069	84363878	18167514	388	54872											
ZSCAN2	54993	broad.mit.edu	37	chr15	85149258	85149258	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccatgtttttaagcgttgtCatatgtatgattctaagaga	8	6	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85149258	G	G	85149258	1	3	50	0	1	0	0	0	0	0	0	0	18360	841	29	4		4	ZSCAN2	15	85149258	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	785380	85149258	17382134	389	54873											
NTRK3	4916	broad.mit.edu	37	chr15	88679694	88679694	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgaagcccaggatgcCtacctggtgagtgttgatgg	17	8	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88679694	T	T	88679694	1	4	50	0	1	0	0	0	0	0	0	0	10803	696	24	4		4	NTRK3	15	88679694	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3530436	88679694	13851698	390	54874											
ACAN	176	broad.mit.edu	37	chr15	89398511	89398511	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggactgccctctggagacCtggactccagtggtcttact	12	12	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89398511	G	G	89398511	3	3	50	1	0	0	0	0	1	0	0	0	117	680	24	4	2737	4	ACAN	15	89398511	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	718817	89398511	13132881	391	54875											
SV2B	9899	broad.mit.edu	37	chr15	91832761	91832761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgcaggtggctccatGctaatctctgcagtctgctg	10	14	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91832761	T	T	91832761	3	4	50	1	0	0	0	0	1	0	0	0	15536	1319	46	3	1761	3	SV2B	15	91832761	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2434250	91832761	10698631	392	54876											
PCSK6	5046	broad.mit.edu	37	chr15	101983939	101983939	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcttccaccccacaagAatctcccccttatctgaggg	5	15	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101983939	C	C	101983939	1	2	50	0	1	0	0	0	0	0	0	0	11698	261	9	5		5	PCSK6	15	101983939	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	10151178	101983939	547453	393	54877											
HBM	3042	broad.mit.edu	37	chr16	216613	216613	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttccacgtcgtgctggcctCccacctgcaggacgagttca	10	15	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216613	T	T	216613	3	4	50	1	0	0	0	0	1	0	0	0	7050	855	30	4	342	4	HBM	16	216613	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08		216613	90138140	394	54878											
TBC1D24	57465	broad.mit.edu	37	chr16	2569756	2569756	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacaaagtagaccctctccGagcccaccagccacagaata	6	17	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2569756	T	T	2569756	1	4	50	0	1	0	0	0	0	0	0	0	15733	1073	37	3		3	TBC1D24	16	2569756	3'UTR	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2353143	2569756	87784997	395	54879											
A2BP1	54715	broad.mit.edu	37	chr16	7191969	7191969	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatcctatttcttattttcCttctccttcttctccatctt	2	13	5	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7191969	G	G	7191969	1	3	50	0	1	0	0	0	0	0	0	0	3	696	24	4		4	A2BP1	16	7191969	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4622213	7191969	83162784	396	54880											
A2BP1	54715	broad.mit.edu	37	chr16	7331905	7331905	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtcttactctgtcacccAggatggacaggaggtcagtg	13	9	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7331905	T	T	7331905	1	4	50	0	1	0	0	0	0	0	0	0	3	203	7	5		5	A2BP1	16	7331905	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	139936	7331905	83022848	397	54881											
A2BP1	54715	broad.mit.edu	37	chr16	7383001	7383001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataataactctacgtaaaGcatgctggcgtctcaaggag	10	8	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7383001	T	T	7383001	1	4	50	0	1	0	0	0	0	0	0	0	3	986	34	3		3	A2BP1	16	7383001	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	51096	7383001	82971752	398	54882											
A2BP1	54715	broad.mit.edu	37	chr16	7714869	7714870	+	Intron	DNP	GG	AT	AT													acctcgccagtgcaggggttGgtgtgtctgcatgggaaatg							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	7714870	AT	AT	7714869	1	1	50	0	1	0	0	0	0	0	0	0	3	1363	47	4		4	A2BP1	16	7714869	Intron	DNP	GG	TCGA-17-Z017-01A-01W-0746-08	331868	7714869	82639884	399	54883											
EMP2	2013	broad.mit.edu	37	chr16	10641527	10641527	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacgtttaaagcccagagcGggatgtgctgaagagggtaa	14	7	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10641527	A	A	10641527	1	1	50	0	1	0	0	0	0	0	0	0	5144	1131	39	4		4	EMP2	16	10641527	5'UTR	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2926658	10641527	79713226	400	54884											
C16orf75	116028	broad.mit.edu	37	chr16	11420814	11420814	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttacttggcagatgaagAaattgagtcctgttaaggaa	10	6	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11420814	G	G	11420814	1	3	50	0	1	0	0	0	0	0	0	0	1848	261	9	5		5	C16orf75	16	11420814	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	779287	11420814	78933939	401	54885											
TMC5	79838	broad.mit.edu	37	chr16	19501836	19501836	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgggttgtttggatctAtcggaacctcattggaagtg	13	7	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19501836	G	G	19501836	3	3	50	1	0	0	0	0	1	0	0	0	16111	449	16	5	3069	5	TMC5	16	19501836	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	8081022	19501836	70852917	402	54886											
DCUN1D3	123879	broad.mit.edu	37	chr16	20873760	20873760	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctcctcacggtggcctGcacccctcctgctatgtgac	9	18	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20873760	A	A	20873760	3	1	50	1	0	0	0	0	1	0	0	0	4348	1319	46	4	821	4	DCUN1D3	16	20873760	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1371924	20873760	69480993	403	54887											
KIAA0556	23247	broad.mit.edu	37	chr16	27610080	27610080	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggatgcagactctgagCaggagatatacatgcagggg	14	9	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27610080	T	T	27610080	1	4	50	0	1	0	0	0	0	0	0	0	8253	725	25	4		4	KIAA0556	16	27610080	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6736320	27610080	62744673	404	54888											
KIAA0556	23247	broad.mit.edu	37	chr16	27788315	27788315	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaaactgtggaattatGcgaaaacaccccatcgaggg	10	9	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27788315	C	C	27788315	3	2	50	1	0	0	0	0	1	0	0	0	8253	1319	46	4	4614	4	KIAA0556	16	27788315	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	178235	27788315	62566438	405	54889											
CD19	930	broad.mit.edu	37	chr16	28948872	28948872	+	Intron	DEL	G	-	-													ggggcctttgtgggacctcaGagacttaggtgtaattgcag							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28948872	-	-	28948872	6	5	50	0	1	1	0	1	0	0	0	0	3003	957	33	0		0	CD19	16	28948872	Intron	DEL	G	TCGA-17-Z017-01A-01W-0746-08	1160557	28948872	61405881	406	54890											
STX1B	112755	broad.mit.edu	37	chr16	31012518	31012518	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccggatctcttccacctgGagcagaaaatcggctatacc	8	15	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31012518	T	T	31012518	1	4	50	0	1	0	0	0	0	0	0	0	15462	1189	41	3		3	STX1B	16	31012518	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2063646	31012518	59342235	407	54891											
SALL1	6299	broad.mit.edu	37	chr16	51174345	51174345	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgtggctgactcagggccCccggagtcacttttgactga	12	12	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51174345	G	G	51174345	2	3	50	1	0	0	0	0	0	0	0	1	13921	610	22	4		4	SALL1	16	51174345	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	20161827	51174345	39180408	408	54892											
AP1G1	164	broad.mit.edu	37	chr16	71787790	71787790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgtttggaaggtgcataCctgaaaaaaacaatggaaag	10	6	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71787790	A	A	71787790	3	1	50	1	0	0	0	0	1	0	0	0	734	521	18	3	1282	3	AP1G1	16	71787790	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	20613445	71787790	18566963	409	54893											
KCNG4	93107	broad.mit.edu	37	chr16	84256651	84256651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagaagaggcaacaacgCggggtagagagtggacttgc	19	6	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84256651	A	A	84256651	1	1	50	0	1	0	0	0	0	0	0	0	8100	783	27	3		3	KCNG4	16	84256651	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	12468861	84256651	6098102	410	54894											
USP10	9100	broad.mit.edu	37	chr16	84808876	84808876	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcttcattaaaacactgatGaaggggtttacagctgggca	10	7	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84808876	A	A	84808876	1	1	50	0	1	0	0	0	0	0	0	0	17167	1305	45	4		4	USP10	16	84808876	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	552225	84808876	5545877	411	54895											
BANP	54971	broad.mit.edu	37	chr16	88048941	88048941	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctcgtgccctctgcccGtccctctgccagtcccctct	7	21	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88048941	A	A	88048941	1	1	50	0	1	0	0	0	0	0	0	0	1315	1160	40	4		4	BANP	16	88048941	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3240065	88048941	2305812	412	54896											
P2RX1	5023	broad.mit.edu	37	chr17	3803116	3803116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaaacccctgtctcagcCgggcgcagtggctcacacct	9	16	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3803116	A	A	3803116	1	1	50	0	1	0	0	0	0	0	0	0	11433	667	23	1		1	P2RX1	17	3803116	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08		3803116	77392094	413	54897											
TP53	7157	broad.mit.edu	37	chr17	7577518	7577518	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggagtcttccagtgtgaTgatggtgaggatgggcctcc	15	9	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577518	A	A	7577518	3	1	50	1	0	0	0	0	1	0	0	0	16505	1464	51	5	527	5	TP53	17	7577518	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	3774402	7577518	73617692	414	54898											
GUCY2D	3000	broad.mit.edu	37	chr17	7918200	7918200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctgaggccttgaagaCggggacaccagtggagcccg	17	10	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7918200	A	A	7918200	3	1	50	1	0	0	0	0	1	0	0	0	6962	536	19	3	2650	3	GUCY2D	17	7918200	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	340682	7918200	73277010	415	54899											
PIK3R6	146850	broad.mit.edu	37	chr17	8741381	8741381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaagcccctcagtgagGgtgtgggagcgtgggggggc	22	7	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8741381	T	T	8741381	1	4	50	0	1	0	0	0	0	0	0	0	12018	1247	43	2		2	PIK3R6	17	8741381	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	823181	8741381	72453829	416	54900											
MYH4	4622	broad.mit.edu	37	chr17	10368833	10368833	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcctggcgctttttgcctCggtaggctgtcaccacctca	9	16	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10368833	T	T	10368833	3	4	50	1	0	0	0	0	1	0	0	0	10131	884	31	4	5532	4	MYH4	17	10368833	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1627452	10368833	70826377	417	54901											
DNAH9	1770	broad.mit.edu	37	chr17	11550333	11550333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttacagatcatgaccagGcaccggtgagctgggagggg	16	8	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11550333	T	T	11550333	1	4	50	0	1	0	0	0	0	0	0	0	4648	1218	42	3		3	DNAH9	17	11550333	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1181500	11550333	69644877	418	54902											
MPRIP	23164	broad.mit.edu	37	chr17	17075991	17075991	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtggtccctcggtgctgAggccgtgtccttgcctgcag	16	13	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17075991	T	T	17075991	1	4	50	0	1	0	0	0	0	0	0	0	9837	319	11	5		5	MPRIP	17	17075991	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	5525658	17075991	64119219	419	54903											
SSH2	85464	broad.mit.edu	37	chr17	28004720	28004720	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaatgaattagcgtgtcGctccagagaggcaaaactaa	9	9	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28004720	A	A	28004720	2	1	50	1	0	0	0	0	0	0	0	1	15303	1078	38	4		4	SSH2	17	28004720	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	10928729	28004720	53190490	420	54904											
ACCN1	40	broad.mit.edu	37	chr17	31808930	31808930	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcccttcccttcataacctCatttttgccaagtacagtgc	5	14	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31808930	G	G	31808930	1	3	50	0	1	0	0	0	0	0	0	0	128	841	29	4		4	ACCN1	17	31808930	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3804210	31808930	49386280	421	54905											
CCT6B	10693	broad.mit.edu	37	chr17	33255539	33255539	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccttaggtgattcacccGcctcggcctcccaaagtgct	9	15	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33255539	A	A	33255539	1	1	50	0	1	0	0	0	0	0	0	0	2988	1102	38	4		4	CCT6B	17	33255539	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1446609	33255539	47939671	422	54906											
LIG3	3980	broad.mit.edu	37	chr17	33326409	33326409	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaagtgtgcaggaggcCatgatgatgccacgcttgcc	12	12	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33326409	T	T	33326409	3	4	50	1	0	0	0	0	1	0	0	0	8854	594	21	4	2251	4	LIG3	17	33326409	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	70870	33326409	47868801	423	54907											
TBC1D3C	414060	broad.mit.edu	37	chr17	34610863	34610863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactggggaatccagccgGggaatcctgggcccaccatg	14	13	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34610863	T	T	34610863	1	4	50	0	1	0	0	0	0	0	0	0	15741	1247	43	2		2	TBC1D3C	17	34610863	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1284454	34610863	46584347	424	54908											
PSMD3	5709	broad.mit.edu	37	chr17	38153787	38153787	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgagaacagcaggacttgGagtttgccaaggagatggca	15	7	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38153787	A	A	38153787	3	1	50	1	0	0	0	0	1	0	0	0	12805	1175	41	4	1604	4	PSMD3	17	38153787	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3542924	38153787	43041423	425	54909											
THRA	7067	broad.mit.edu	37	chr17	38245627	38245627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggcctgccacgccagccGcttcctccacatgaaagtcg	11	17	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38245627	T	T	38245627	1	4	50	0	1	0	0	0	0	0	0	0	15996	1087	38	3		3	THRA	17	38245627	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	91840	38245627	42949583	426	54910											
KRT13	3860	broad.mit.edu	37	chr17	39661878	39661878	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactgtggctcttccccagAgtggacaccttttatacacc	9	13	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39661878	G	G	39661878	1	3	50	0	1	0	0	0	0	0	0	0	8521	319	11	5		5	KRT13	17	39661878	5'Flank	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1416251	39661878	41533332	427	54911											
NBR1	4077	broad.mit.edu	37	chr17	41341032	41341032	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatagaaaaagtaacctctAacatctcggcttgtgttttc	6	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41341032	C	C	41341032	1	2	50	0	1	0	0	0	0	0	0	0	10295	377	13	5		5	NBR1	17	41341032	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1679154	41341032	39854178	428	54912											
CD300LG	146894	broad.mit.edu	37	chr17	41926251	41926251	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctttactgatctctctgttCgtctttccaggtaacagata	6	10	4	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41926251	T	T	41926251	2	4	50	1	0	0	0	0	0	0	0	1	3032	883	31	4		4	CD300LG	17	41926251	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	585219	41926251	39268959	429	54913											
HOXB1	3211	broad.mit.edu	37	chr17	46606949	46606949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggcttccggggaggtgCatgtcgactggtctgaggca	18	8	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46606949	A	A	46606949	3	1	50	1	0	0	0	0	1	0	0	0	7366	710	25	3	43	3	HOXB1	17	46606949	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4680698	46606949	34588261	430	54914											
DHX40	79665	broad.mit.edu	37	chr17	57650386	57650386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttttgtttagtcagagtGgtttgatcacttaatgtttg	9	6	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57650386	T	T	57650386	1	4	50	0	1	0	0	0	0	0	0	0	4552	1363	47	2		2	DHX40	17	57650386	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	11043437	57650386	23544824	431	54915											
CSHL1	1444	broad.mit.edu	37	chr17	61987508	61987508	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggattggggacccctGgtgccaccctcacccccatc	9	18	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61987508	A	A	61987508	1	1	50	0	1	0	0	0	0	0	0	0	3976	1363	47	4		4	CSHL1	17	61987508	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4337122	61987508	19207702	432	54916											
BPTF	2186	broad.mit.edu	37	chr17	65907022	65907022	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctcttagattctgacagtGataaaccctgcaaggaagaa	9	8	2	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65907022	A	A	65907022	3	1	50	1	0	0	0	0	1	0	0	0	1504	1290	45	4	3450	4	BPTF	17	65907022	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3919514	65907022	15288188	433	54917											
MAP2K6	5608	broad.mit.edu	37	chr17	67452980	67452980	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaaatccctgccctgcacTgctgctgactatcttcctac	5	16	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67452980	A	A	67452980	1	1	50	0	1	0	0	0	0	0	0	0	9333	1595	55	5		5	MAP2K6	17	67452980	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	1545958	67452980	13742230	434	54918											
TNRC6C	57690	broad.mit.edu	37	chr17	76089667	76089667	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatcaatgtgccggtgttctGatctgtggcttctcattttg	10	8	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76089667	C	C	76089667	1	2	50	0	1	0	0	0	0	0	0	0	16465	1305	45	4		4	TNRC6C	17	76089667	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8636687	76089667	5105543	435	54919											
DNAH17	8632	broad.mit.edu	37	chr17	76498745	76498745	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaaatgccaggcccacctcGgtcgtccaccagatctgggt	11	15	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76498745	C	C	76498745	1	2	50	0	1	0	0	0	0	0	0	0	4641	1103	39	4		4	DNAH17	17	76498745	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	409078	76498745	4696465	436	54920											
DLGAP1	9229	broad.mit.edu	37	chr18	3879466	3879466	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggttgtcgtccgagctccaCcagcccggggaggtgctggg	17	12	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3879466	G	G	3879466	3	3	50	1	0	0	0	0	1	0	0	0	4599	508	18	4	2425	4	DLGAP1	18	3879466	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08		3879466	74197782	437	54921											
KIAA0802	23255	broad.mit.edu	37	chr18	8824940	8824940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcgggcagggcacgaGgacagcacagagcctttccc	17	12	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8824940	T	T	8824940	3	4	50	1	0	0	0	0	1	0	0	0	8264	991	35	2	3482	2	KIAA0802	18	8824940	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4945474	8824940	69252308	438	54922											
C18orf1	753	broad.mit.edu	37	chr18	13645521	13645521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaggtgatgggccaccaCccaggcgcctctttcctcca	11	16	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13645521	A	A	13645521	3	1	50	1	0	0	0	0	1	0	0	0	1912	506	18	3	885	3	C18orf1	18	13645521	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4820581	13645521	64431727	439	54923											
ROCK1	6093	broad.mit.edu	37	chr18	18629104	18629105	+	Frame_Shift_Ins	INS	-	A	A													tgatgtccctttcttcccagINSaaaaaagcagaatcagatct					rs35810558		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18629105	A	A	18629104	7	5	50	1	0	1	1	0	0	0	0	0	13628	933	33	0	3821	0	ROCK1	18	18629104	Frame_Shift_Ins	INS	-	TCGA-17-Z017-01A-01W-0746-08	4983583	18629104	59448144	440	54924											
SNRPD1	6632	broad.mit.edu	37	chr18	19203777	19203777	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaacagagaacctgtaCagctggaaacgctgagtatt	11	7	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19203777	T	T	19203777	4	4	50	1	0	0	0	0	0	1	0	0	14978	479	17	4	170	4	SNRPD1	18	19203777	Nonsense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	574673	19203777	58873471	441	54925											
ANKRD29	147463	broad.mit.edu	37	chr18	21228942	21228942	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gataaagcaagcaaacacatGaaaaagtaaataagcattgt	7	5	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21228942	T	T	21228942	1	4	50	0	1	0	0	0	0	0	0	0	657	1305	45	3		3	ANKRD29	18	21228942	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2025165	21228942	56848306	442	54926											
DSC3	1825	broad.mit.edu	37	chr18	28602406	28602406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaatgctgtatttcaGgcgcgtatgcattgtgtccg	11	9	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28602406	T	T	28602406	3	4	50	1	0	0	0	0	1	0	0	0	4807	991	35	2	1923	2	DSC3	18	28602406	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	7373464	28602406	49474842	443	54927											
DSG3	1830	broad.mit.edu	37	chr18	29036401	29036401	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactttatttaaatgtctgcAggtggtcatattggttcatg	10	5	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29036401	T	T	29036401	5	4	50	1	0	0	0	0	0	0	1	0	4818	202	7	5	53	5	DSG3	18	29036401	Splice_Site	SNP	A	TCGA-17-Z017-01A-01W-0746-08	433995	29036401	49040847	444	54928											
ASXL3	80816	broad.mit.edu	37	chr18	31294811	31294811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttaaattggcttattaGtgttatcttgaatccatttt	6	4	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31294811	T	T	31294811	1	4	50	0	1	0	0	0	0	0	0	0	1072	1044	36	3		3	ASXL3	18	31294811	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2258410	31294811	46782437	445	54929											
CELF4	56853	broad.mit.edu	37	chr18	34864111	34864111	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacagatacacatacacaCacagatacacacacccatac	2	15	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34864111	T	T	34864111	1	4	50	0	1	0	0	0	0	0	0	0	3248	493	17	4		4	CELF4	18	34864111	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3569300	34864111	43213137	446	54930											
POLI	11201	broad.mit.edu	37	chr18	51800270	51800270	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttttcttcaattgtgcttgGgtttctcataaaatattttt	6	5	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51800270	C	C	51800270	1	2	50	0	1	0	0	0	0	0	0	0	12298	1247	43	4		4	POLI	18	51800270	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	16936159	51800270	26276978	447	54931											
NETO1	81832	broad.mit.edu	37	chr18	70417732	70417732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttggacatactttttaCgaggctgtttgatctgtacg	9	8	1	1	rs140307788	byFrequency	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70417732	A	A	70417732	3	1	50	1	0	0	0	0	1	0	0	0	10434	536	19	3	503	3	NETO1	18	70417732	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	18617462	70417732	7659516	448	54932											
TRAPPC5	126003	broad.mit.edu	37	chr19	7747434	7747434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtggaaggcgctcttcGgcaaggaggcggacaagctg	17	10	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7747434	T	T	7747434	3	4	50	1	0	0	0	0	1	0	0	0	16586	1116	39	1	297	1	TRAPPC5	19	7747434	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08		7747434	51381549	449	54933											
FBN3	84467	broad.mit.edu	37	chr19	8154858	8154858	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagctggacggagagggGgaggggagtcagagtcaggg	23	5	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8154858	A	A	8154858	1	1	50	0	1	0	0	0	0	0	0	0	5761	1247	43	4		4	FBN3	19	8154858	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	407424	8154858	50974125	450	54934											
MUC16	94025	broad.mit.edu	37	chr19	9080421	9080422	+	Intron	DNP	AG	GT	GT													ggcttgggtggcattagcagAgcagaaatggaaacaaggtc							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	9080422	GT	GT	9080421	1	3	50	0	1	0	0	0	0	0	0	0	10067	319	11	5		5	MUC16	19	9080421	Intron	DNP	AG	TCGA-17-Z017-01A-01W-0746-08	925563	9080421	50048562	451	54935											
SMARCA4	6597	broad.mit.edu	37	chr19	11107209	11107209	+	Frame_Shift_Del	DEL	C	-	-													gacagacgcctgccattgggCcggatggcgaggtgaggaag							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11107209	-	-	11107209	7	5	50	1	0	1	0	1	0	0	0	0	14884	739	26	0	1839	0	SMARCA4	19	11107209	Frame_Shift_Del	DEL	C	TCGA-17-Z017-01A-01W-0746-08	2026788	11107209	48021774	452	54936											
CYP4F2	8529	broad.mit.edu	37	chr19	15994914	15994914	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagagagaaagagagagaggGagggagggaggaaggaagga	22	0	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15994914	T	T	15994914	1	4	50	0	1	0	0	0	0	0	0	0	4221	1189	41	3		3	CYP4F2	19	15994914	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4887705	15994914	43134069	453	54937											
ZNF507	22847	broad.mit.edu	37	chr19	32873579	32873579	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaatctactagtcctacAttgtagcctcctcacggtgt	6	11	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32873579	G	G	32873579	1	3	50	0	1	0	0	0	0	0	0	0	18080	232	8	5		5	ZNF507	19	32873579	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	16878665	32873579	26255404	454	54938											
ATP4A	495	broad.mit.edu	37	chr19	36050049	36050049	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctccaggttcttgaccacGcagttcttactggccaggcg	11	14	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36050049	A	A	36050049	2	1	50	1	0	0	0	0	0	0	0	1	1149	1079	38	4		4	ATP4A	19	36050049	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3176470	36050049	23078934	455	54939											
LGALS13	29124	broad.mit.edu	37	chr19	40095876	40095876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgaggattcagatattGccttccgtttccgagtgcac	11	9	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40095876	T	T	40095876	3	4	50	1	0	0	0	0	1	0	0	0	8812	1319	46	3	161	3	LGALS13	19	40095876	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4045827	40095876	19033107	456	54940											
LGALS13	29124	broad.mit.edu	37	chr19	40098080	40098080	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccctgctcacattttccCctacactttgtcattaaaac	2	14	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40098080	T	T	40098080	1	4	50	0	1	0	0	0	0	0	0	0	8812	638	22	4		4	LGALS13	19	40098080	3'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2204	40098080	19030903	457	54941											
PSG6	5675	broad.mit.edu	37	chr19	43421938	43421938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggaggggctgagagggGtcccatggtctctgctgtct	18	9	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43421938	T	T	43421938	3	4	50	1	0	0	0	0	1	0	0	0	12765	1261	44	3	1363	3	PSG6	19	43421938	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3323858	43421938	15707045	458	54942											
PSG6	5675	broad.mit.edu	37	chr19	43527443	43527443	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagaggttttggatcatTcatttcttcattccattcct	5	9	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43527443	C	C	43527443	1	2	50	0	1	0	0	0	0	0	0	0	12765	1798	62	5		5	PSG6	19	43527443	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	105505	43527443	15601540	459	54943											
PSG5	5673	broad.mit.edu	37	chr19	43679211	43679211	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaggagaagagagtttGtagagacaaattggaagggt	14	2	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43679211	C	C	43679211	1	2	50	0	1	0	0	0	0	0	0	0	12764	1392	48	4		4	PSG5	19	43679211	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	151768	43679211	15449772	460	54944											
HIF3A	64344	broad.mit.edu	37	chr19	46812639	46812639	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggggccccctcttccGtctgcccaagttcaagtgct	12	15	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46812639	A	A	46812639	1	1	50	0	1	0	0	0	0	0	0	0	7172	1160	40	4		4	HIF3A	19	46812639	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3133428	46812639	12316344	461	54945											
CRX	1406	broad.mit.edu	37	chr19	48343114	48343114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatggcgcctacagccccGtggatagcttggaattcaag	12	11	1	0	rs138146799		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48343114	T	T	48343114	3	4	50	1	0	0	0	0	1	0	0	0	3934	1145	40	3	800	3	CRX	19	48343114	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1530475	48343114	10785869	462	54946											
EMP3	2014	broad.mit.edu	37	chr19	48830831	48830831	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctctggtacgactgcacGtggaacaacgacaccaaaac	8	12	1	0	rs139549534		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48830831	T	T	48830831	2	4	50	1	0	0	0	0	0	0	0	1	5145	1132	40	3		3	EMP3	19	48830831	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	487717	48830831	10298152	463	54947											
IGLON5	402665	broad.mit.edu	37	chr19	51828509	51828509	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgagggaggaggagggGctgggggtctggactcctgg	23	6	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51828509	A	A	51828509	1	1	50	0	1	0	0	0	0	0	0	0	7665	1218	42	4		4	IGLON5	19	51828509	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2997678	51828509	7300474	464	54948											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918646	51918646	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccaggcacaggctttgGccctccagtactgggagaga	13	12	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51918646	T	T	51918646	2	4	50	1	0	0	0	0	0	0	0	1	14419	1190	42	3		3	SIGLEC10	19	51918646	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	90137	51918646	7210337	465	54949											
HAS1	3036	broad.mit.edu	37	chr19	52216511	52216511	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccctggagacccagaagtCccagtcccaatatagtccag	8	15	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52216511	T	T	52216511	1	4	50	0	1	0	0	0	0	0	0	0	7027	870	30	4		4	HAS1	19	52216511	3'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	297865	52216511	6912472	466	54950											
ZNF616	90317	broad.mit.edu	37	chr19	52633832	52633832	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcaatgtaattattcaCacatcaaacctgaaagttaa	4	8	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52633832	A	A	52633832	1	1	50	0	1	0	0	0	0	0	0	0	18168	493	17	3		3	ZNF616	19	52633832	5'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	417321	52633832	6495151	467	54951											
PRKCG	5582	broad.mit.edu	37	chr19	54401312	54401312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgagtccaggacgcctgCacatctccgacttcagcttc	11	15	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54401312	A	A	54401312	3	1	50	1	0	0	0	0	1	0	0	0	12618	710	25	3	1077	3	PRKCG	19	54401312	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1767480	54401312	4727671	468	54952											
LAIR1	3903	broad.mit.edu	37	chr19	54868136	54868136	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgatggaggcagaagaGgaccaggaggaggagacaga	19	6	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54868136	A	A	54868136	3	1	50	1	0	0	0	0	1	0	0	0	8674	1000	35	4	336	4	LAIR1	19	54868136	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	466824	54868136	4260847	469	54953											
LILRA2	11027	broad.mit.edu	37	chr19	55085904	55085904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaacaaatcagcatcctgGgttagacggatacaagagcc	10	9	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55085904	T	T	55085904	3	4	50	1	0	0	0	0	1	0	0	0	8857	1241	43	2	217	2	LILRA2	19	55085904	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	217768	55085904	4043079	470	54954											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701625	56701625	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacgtcacatgcaaagggCggcagggccttggcttcttg	13	12	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56701625	G	G	56701625	2	3	50	1	0	0	0	0	0	0	0	1	18368	755	27	4		4	ZSCAN5B	19	56701625	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1615721	56701625	2427358	471	54955											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56703226	56703226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacacactcacctgcctcCtggacagtgcagcgaccctg	8	18	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56703226	A	A	56703226	3	1	50	1	0	0	0	0	1	0	0	0	18368	681	24	2	918	2	ZSCAN5B	19	56703226	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1601	56703226	2425757	472	54956											
C19orf18	147685	broad.mit.edu	37	chr19	58483981	58483981	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaaggacgccgaacacacAgcttccaaatatctaagatg	9	10	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58483981	T	T	58483981	1	4	50	0	1	0	0	0	0	0	0	0	1929	203	7	5		5	C19orf18	19	58483981	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1780755	58483981	645002	473	54957											
ZSCAN1	284312	broad.mit.edu	37	chr19	58551817	58551817	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgatccctttctcccgcacaGttctggtatctctggactcg	8	15	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58551817	C	C	58551817	5	2	50	1	0	0	0	0	0	0	1	0	18355	1043	36	4	376	4	ZSCAN1	19	58551817	Splice_Site	SNP	G	TCGA-17-Z017-01A-01W-0746-08	67836	58551817	577166	474	54958											
RASSF2	9770	broad.mit.edu	37	chr20	4771116	4771116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttatggttgtagaaatggCcgttgatggagaagcggtgg	16	5	0	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4771116	A	A	4771116	3	1	50	1	0	0	0	0	1	0	0	0	13194	739	26	3	486	3	RASSF2	20	4771116	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08		4771116	58254404	475	54959											
DNMT3B	1789	broad.mit.edu	37	chr20	31368194	31368194	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggagggaagactcgatccTcgtcaacggggcctgcagcg	16	12	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31368194	C	C	31368194	3	2	50	1	0	0	0	0	1	0	0	0	4717	1551	54	5	107	5	DNMT3B	20	31368194	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	26597078	31368194	31657326	476	54960											
TP53TG5	27296	broad.mit.edu	37	chr20	44004176	44004176	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attattttgttttgttttatTgcaggcactgttttccctgg	8	6	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44004176	A	A	44004176	3	1	50	1	0	0	0	0	1	0	0	0	16515	1812	63	5	609	5	TP53TG5	20	44004176	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	12635982	44004176	19021344	477	54961											
SLC12A5	57468	broad.mit.edu	37	chr20	44672119	44672119	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgagggaattaaggccagGagaagctaagtaacatgtcc	13	6	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44672119	T	T	44672119	1	4	50	0	1	0	0	0	0	0	0	0	14499	1189	41	3		3	SLC12A5	20	44672119	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	667943	44672119	18353401	478	54962											
DIDO1	11083	broad.mit.edu	37	chr20	61513366	61513366	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtctgcaggatgtgctcCagcggtgatgctgttttgga	15	7	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61513366	A	A	61513366	2	1	50	1	0	0	0	0	0	0	0	1	4562	581	21	2		2	DIDO1	20	61513366	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	16841247	61513366	1512154	479	54963											
BAGE2	85319	broad.mit.edu	37	chr21	11052818	11052818	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatttatttacagcacaaCtctgtgaatccttgaaggac	6	9	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11052818	T	T	11052818	1	4	50	0	1	0	0	0	0	0	0	0	1297	580	20	4		4	BAGE2	21	11052818	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08		11052818	37077077	480	54964											
BAGE2	85319	broad.mit.edu	37	chr21	11077295	11077295	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctgtagcaagttatcCagaatatatatctaagatca	8	6	2	2	rs112451076		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11077295	T	T	11077295	1	4	50	0	1	0	0	0	0	0	0	0	1297	609	21	4		4	BAGE2	21	11077295	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	24477	11077295	37052600	481	54965											
TMPRSS15	5651	broad.mit.edu	37	chr21	19716380	19716380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtagaaatgtaaaatcctGtaaaaatatcaaaaaaaatt	6	3	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19716380	T	T	19716380	1	4	50	0	1	0	0	0	0	0	0	0	16369	1392	48	3		3	TMPRSS15	21	19716380	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8639085	19716380	28413515	482	54966											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31812895	31812895	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccaaagaattccatcttcTgcagtccccgccagactaac	6	16	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31812895	A	A	31812895	3	1	50	1	0	0	0	0	1	0	0	0	8597	1580	55	5	252	5	KRTAP15-1	21	31812895	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	12096515	31812895	16317000	483	54967											
SYNJ1	8867	broad.mit.edu	37	chr21	34022390	34022390	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaattaatagtgctatgtaCgtcccaagaagaagaagaaa	8	6	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34022390	A	A	34022390	1	1	50	0	1	0	0	0	0	0	0	0	15571	551	19	3		3	SYNJ1	21	34022390	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2209495	34022390	14107505	484	54968											
GART	2618	broad.mit.edu	37	chr21	34877985	34877985	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtcaaattctacacgatTtttatacagtttatgattaa	4	6	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34877985	A	A	34877985	3	1	50	1	0	0	0	0	1	0	0	0	6305	1841	64	5	436	5	GART	21	34877985	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	855595	34877985	13251910	485	54969											
TRPM2	7226	broad.mit.edu	37	chr21	45784063	45784063	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggctaccaagccccacacCttccagggcacacagtggga	11	15	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45784063	G	G	45784063	2	3	50	1	0	0	0	0	0	0	0	1	16711	668	24	4		4	TRPM2	21	45784063	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	10906078	45784063	2345832	486	54970											
DIP2A	23181	broad.mit.edu	37	chr21	47974225	47974225	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggctcactgtggggctGtccacctgcagctctttgta	14	11	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47974225	C	C	47974225	1	2	50	0	1	0	0	0	0	0	0	0	4567	1392	48	4		4	DIP2A	21	47974225	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2190162	47974225	155670	487	54971											
NAGA	4668	broad.mit.edu	37	chr22	42464516	42464516	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccagccagcccatggGtggtgtctgcaggagcccat	14	14	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42464516	C	C	42464516	3	2	50	1	0	0	0	0	1	0	0	0	10235	1261	44	4	1188	4	NAGA	22	42464516	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08		42464516	8840050	488	54972											
CSF2RA	1438	broad.mit.edu	37	chrX	1414372	1414372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgaaaccacagaccctaCtgacaaccctcagcgtaacc	6	15	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1414372	A	A	1414372	1	1	50	0	1	0	0	0	0	0	0	0	3968	580	20	3		3	CSF2RA	23	1414372	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08		1414372	153856188	489	54973											
WWC3	55841	broad.mit.edu	37	chrX	10102711	10102711	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgattttttttttctgctGttcatactgaaaggcatatg	8	5	2	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10102711	C	C	10102711	1	2	50	0	1	0	0	0	0	0	0	0	17540	1392	48	4		4	WWC3	23	10102711	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8688339	10102711	145167849	490	54974											
WWC3	55841	broad.mit.edu	37	chrX	10109476	10109476	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taattgtctccggtcccaggGagaagatagcattcttcaca	9	10	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10109476	C	C	10109476	3	2	50	1	0	0	0	0	1	0	0	0	17540	1188	41	4	3300	4	WWC3	23	10109476	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	6765	10109476	145161084	491	54975											
CLCN4	1183	broad.mit.edu	37	chrX	10155764	10155764	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgtcgcttgtcgcttttAcccctgtgggagggatttat	13	9	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10155764	G	G	10155764	1	3	50	0	1	0	0	0	0	0	0	0	3496	406	14	5		5	CLCN4	23	10155764	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	46288	10155764	145114796	492	54976											
CLCN4	1183	broad.mit.edu	37	chrX	10188801	10188801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagcccacatcccctgaaGctgcggcgcatcctgaacct	8	17	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10188801	T	T	10188801	3	4	50	1	0	0	0	0	1	0	0	0	3496	962	34	3	2114	3	CLCN4	23	10188801	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	33037	10188801	145081759	493	54977											
REPS2	9185	broad.mit.edu	37	chrX	17024252	17024252	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttttttggttagccactAggtgaaatccttgatatttc	8	7	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17024252	T	T	17024252	1	4	50	0	1	0	0	0	0	0	0	0	13337	435	15	5		5	REPS2	23	17024252	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	6835451	17024252	138246308	494	54978											
BEND2	139105	broad.mit.edu	37	chrX	18222163	18222163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctaaaatgacaccaacCcagtataagtcaactgtaac	4	12	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18222163	A	A	18222163	1	1	50	0	1	0	0	0	0	0	0	0	1403	638	22	2		2	BEND2	23	18222163	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1197911	18222163	137048397	495	54979											
SCML2	10389	broad.mit.edu	37	chrX	18264765	18264765	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggggatatgtccccaactAgtggtgaacttgtggtgcct	14	8	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18264765	T	T	18264765	3	4	50	1	0	0	0	0	1	0	0	0	14023	420	15	5	360	5	SCML2	23	18264765	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	42602	18264765	137005795	496	54980											
MAP7D2	256714	broad.mit.edu	37	chrX	20044112	20044112	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggatgattactgggcctGaacacagagctctctgttcc	11	10	1	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20044112	A	A	20044112	1	1	50	0	1	0	0	0	0	0	0	0	9360	1305	45	4		4	MAP7D2	23	20044112	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1779347	20044112	135226448	497	54981											
POLA1	5422	broad.mit.edu	37	chrX	24753474	24753474	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagatacagtacttgcggaCagtaaagagtcgtcagtgac	11	8	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24753474	T	T	24753474	1	4	50	0	1	0	0	0	0	0	0	0	12282	493	17	4		4	POLA1	23	24753474	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4709362	24753474	130517086	498	54982											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29442872	29442872	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgggtaaagttcaacattGtcttgggtatgggaggaaaa	13	4	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29442872	C	C	29442872	1	2	50	0	1	0	0	0	0	0	0	0	7731	1392	48	4		4	IL1RAPL1	23	29442872	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4689398	29442872	125827688	499	54983											
TAB3	257397	broad.mit.edu	37	chrX	30873050	30873050	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccacggcgtactctgaggAgtttgtcttcctgatgaact	11	10	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30873050	G	G	30873050	2	3	50	1	0	0	0	0	0	0	0	1	15616	291	11	5		5	TAB3	23	30873050	Silent	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1430178	30873050	124397510	500	54984											
DMD	1756	broad.mit.edu	37	chrX	31719666	31719666	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccatcttctatgagaagtGattccatcttttacccctcc	4	13	3	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31719666	C	C	31719666	1	2	50	0	1	0	0	0	0	0	0	0	4620	1305	45	4		4	DMD	23	31719666	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	846616	31719666	123550894	501	54985											
FAM47A	158724	broad.mit.edu	37	chrX	34149363	34149363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcggagactggacccccgacGagtcttggaatgctctaggc	14	12	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34149363	T	T	34149363	3	4	50	1	0	0	0	0	1	0	0	0	5620	1058	37	3	1346	3	FAM47A	23	34149363	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2429697	34149363	121121197	502	54986											
FAM47A	158724	broad.mit.edu	37	chrX	34150181	34150181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtaaaaactcgtcacggCgacaaacgagagtatcttcg	11	9	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34150181	A	A	34150181	3	1	50	1	0	0	0	0	1	0	0	0	5620	768	27	3	2164	3	FAM47A	23	34150181	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	818	34150181	121120379	503	54987											
LANCL3	347404	broad.mit.edu	37	chrX	37489591	37489591	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagttgcttatcagcttaAggagattttgggctgagacg	12	5	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37489591	C	C	37489591	1	2	50	0	1	0	0	0	0	0	0	0	8694	87	3	5		5	LANCL3	23	37489591	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	3339410	37489591	117780969	504	54988											
SRPX	8406	broad.mit.edu	37	chrX	38078429	38078429	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggtggaagatgagagaaagGagaggggagggcaggggagg	24	1	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38078429	C	C	38078429	1	2	50	0	1	0	0	0	0	0	0	0	15282	1189	41	4		4	SRPX	23	38078429	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	588838	38078429	117192131	505	54989											
TSPAN7	7102	broad.mit.edu	37	chrX	38533540	38533540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacaatggcaatgatgagagGagccgggcagtggaccatgt	15	7	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38533540	T	T	38533540	3	4	50	1	0	0	0	0	1	0	0	0	16777	1165	41	3	425	3	TSPAN7	23	38533540	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	455111	38533540	116737020	506	54990											
RBM10	8241	broad.mit.edu	37	chrX	47039331	47039331	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatggattccatcctgggGgccctggcaccctacgcggt	12	15	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47039331	T	T	47039331	2	4	50	1	0	0	0	0	0	0	0	1	13219	1219	43	2		2	RBM10	23	47039331	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	8505791	47039331	108231229	507	54991											
ELK1	2002	broad.mit.edu	37	chrX	47496438	47496438	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcttggccgggctacGgggcgcaatgggactcaggg	20	9	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47496438	A	A	47496438	3	1	50	1	0	0	0	0	1	0	0	0	5101	1116	39	4	132	4	ELK1	23	47496438	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	457107	47496438	107774122	508	54992											
SSX3	10214	broad.mit.edu	37	chrX	48218339	48218339	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaagaaaatcttgctgaaaAtgcagaaaaaaaatgggtat	8	4	1	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48218339	T	T	48218339	1	4	50	0	1	0	0	0	0	0	0	0	15323	116	4	5		5	SSX3	23	48218339	5'Flank	SNP	A	TCGA-17-Z017-01A-01W-0746-08	721901	48218339	107052221	509	54993											
SLC38A5	92745	broad.mit.edu	37	chrX	48318328	48318328	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccccttccacgtgatcatCtgtctttagctccaccctct	4	19	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48318328	A	A	48318328	1	1	50	0	1	0	0	0	0	0	0	0	14721	928	32	3		3	SLC38A5	23	48318328	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	99989	48318328	106952232	510	54994											
PORCN	64840	broad.mit.edu	37	chrX	48374534	48374534	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttcgcaccagcatcgcttGgtgagggttcagcctgggca	14	11	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48374534	C	C	48374534	3	2	50	1	0	0	0	0	1	0	0	0	12353	1362	47	4	1219	4	PORCN	23	48374534	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	56206	48374534	106896026	511	54995											
GRIPAP1	56850	broad.mit.edu	37	chrX	48832305	48832305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttctcccctccacagGccatggtcttgtcagtagct	8	15	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48832305	T	T	48832305	1	4	50	0	1	0	0	0	0	0	0	0	6855	1218	42	3		3	GRIPAP1	23	48832305	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	457771	48832305	106438255	512	54996											
PRICKLE3	4007	broad.mit.edu	37	chrX	49032947	49032947	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtggggcctgactgcagagGatgaagggtgaccggctgga	20	7	0	4			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49032947	T	T	49032947	1	4	50	0	1	0	0	0	0	0	0	0	12594	1189	41	3		3	PRICKLE3	23	49032947	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	200642	49032947	106237613	513	54997											
SSX7	280658	broad.mit.edu	37	chrX	52677138	52677139	+	Intron	DNP	AA	TC	TC													gtggtttgtatatgggtgacAactccagtctgtatctctgg							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	52677139	TC	TC	52677138	1	4	50	0	1	0	0	0	0	0	0	0	15327	145	5	5		5	SSX7	23	52677138	Intron	DNP	AA	TCGA-17-Z017-01A-01W-0746-08	3644191	52677138	102593422	514	54998											
SSX7	280658	broad.mit.edu	37	chrX	52682431	52682431	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtcccctgggccactactCtgctccctccaggtcacctc	7	20	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52682431	T	T	52682431	1	4	50	0	1	0	0	0	0	0	0	0	15327	928	32	4		4	SSX7	23	52682431	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	5293	52682431	102588129	515	54999											
WNK3	65267	broad.mit.edu	37	chrX	54334456	54334456	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattccaaaagcataaacatCtacggattcatcatagtgtt	5	9	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54334456	T	T	54334456	3	4	50	1	0	0	0	0	1	0	0	0	17506	913	32	4	4494	4	WNK3	23	54334456	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1652025	54334456	100936104	516	55000											
FGD1	2245	broad.mit.edu	37	chrX	54472781	54472781	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacatgccttctgtcaggccGctcccctgcctcgggcggtc	12	17	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54472781	C	C	54472781	3	2	50	1	0	0	0	0	1	0	0	0	5889	1086	38	4	242	4	FGD1	23	54472781	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	138325	54472781	100797779	517	55001											
ITIH5L	347365	broad.mit.edu	37	chrX	54776249	54776249	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgcttccatgtccttgggtCtctgtccctggctcacccca	9	16	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54776249	G	G	54776249	1	3	50	0	1	0	0	0	0	0	0	0	7978	928	32	4		4	ITIH5L	23	54776249	3'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	303468	54776249	100494311	518	55002											
SPIN4	139886	broad.mit.edu	37	chrX	62570191	62570191	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagtcaccatctttgtagtCatcaagcagcgtgtacatat	7	9	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62570191	T	T	62570191	3	4	50	1	0	0	0	0	1	0	0	0	15174	826	29	4	245	4	SPIN4	23	62570191	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7793942	62570191	92700369	519	55003											
MTMR8	55613	broad.mit.edu	37	chrX	63615351	63615351	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctacccccgccctcccggtCctggctcaaactctcgtcac	6	21	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63615351	A	A	63615351	1	1	50	0	1	0	0	0	0	0	0	0	10043	870	30	3		3	MTMR8	23	63615351	5'Flank	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1045160	63615351	91655209	520	55004											
OPHN1	4983	broad.mit.edu	37	chrX	67291135	67291135	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccaaaagcaccattgacaTgcacattccctagcttggaa	7	12	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67291135	C	C	67291135	1	2	50	0	1	0	0	0	0	0	0	0	10969	1479	51	5		5	OPHN1	23	67291135	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	3675784	67291135	87979425	521	55005											
YIPF6	286451	broad.mit.edu	37	chrX	67741159	67741159	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgagaacccatgccttaaCtttgttgccctaagtaaaag	7	9	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67741159	A	A	67741159	1	1	50	0	1	0	0	0	0	0	0	0	17609	580	20	3		3	YIPF6	23	67741159	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	450024	67741159	87529401	522	55006											
FAM155B	27112	broad.mit.edu	37	chrX	68725627	68725627	+	Frame_Shift_Del	DEL	C	-	-													ctccggccccccctctgcggCcccctgactccctttcccgt							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68725627	-	-	68725627	7	5	50	1	0	1	0	1	0	0	0	0	5512	739	26	0	504	0	FAM155B	23	68725627	Frame_Shift_Del	DEL	C	TCGA-17-Z017-01A-01W-0746-08	984468	68725627	86544933	523	55007											
FAM155B	27112	broad.mit.edu	37	chrX	68749571	68749571	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccaccactaccaccaacaGtaccatcactaccaccccca	1	21	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68749571	A	A	68749571	2	1	50	1	0	0	0	0	0	0	0	1	5512	1020	36	4		4	FAM155B	23	68749571	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	23944	68749571	86520989	524	55008											
EDA	1896	broad.mit.edu	37	chrX	68921172	68921172	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttccagtggggtcctccGcagagggggcatggcctggt	17	11	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68921172	A	A	68921172	1	1	50	0	1	0	0	0	0	0	0	0	4943	1102	38	4		4	EDA	23	68921172	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	171601	68921172	86349388	525	55009											
ACRC	93953	broad.mit.edu	37	chrX	70812449	70812449	+	Intron	DEL	T	-	-													gagaattaatgaaactttacTttttttttttttttaaatta					rs71886942		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70812449	-	-	70812449	6	5	50	0	1	1	0	1	0	0	0	0	171	1624	56	0		0	ACRC	23	70812449	Intron	DEL	T	TCGA-17-Z017-01A-01W-0746-08	1891277	70812449	84458111	526	55010											
PHKA1	5255	broad.mit.edu	37	chrX	71933542	71933542	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacAcacacacccacacacgcacg	2	21	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71933542	C	C	71933542	1	2	50	0	1	0	0	0	0	0	0	0	11938	174	6	5		5	PHKA1	23	71933542	Intron	SNP	A	TCGA-17-Z017-01A-01W-0746-08	1121093	71933542	83337018	527	55011											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913900	77913900	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaacaatataggaggcTgctaagtcctccaccatctt	7	11	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77913900	A	A	77913900	2	1	50	1	0	0	0	0	0	0	0	1	17717	1567	55	5		5	ZCCHC5	23	77913900	Silent	SNP	T	TCGA-17-Z017-01A-01W-0746-08	5980358	77913900	77356660	528	55012											
TBX22	50945	broad.mit.edu	37	chrX	79282169	79282169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtttgggactgaagccaGtttttctaacagcattgatc	11	7	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79282169	T	T	79282169	1	4	50	0	1	0	0	0	0	0	0	0	15780	1044	36	3		3	TBX22	23	79282169	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	1368269	79282169	75988391	529	55013											
BRWD3	254065	broad.mit.edu	37	chrX	79999863	79999863	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attacttctaagcctttactTtctagtctcctctctacata	2	12	4	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79999863	A	A	79999863	1	1	50	0	1	0	0	0	0	0	0	0	1535	1856	64	5		5	BRWD3	23	79999863	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	717694	79999863	75270697	530	55014											
SATL1	340562	broad.mit.edu	37	chrX	84363384	84363384	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgcctggttgttgcacGcctggttgccacatgcctgg	13	12	0	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84363384	A	A	84363384	2	1	50	1	0	0	0	0	0	0	0	1	13967	1074	38	4		4	SATL1	23	84363384	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	4363521	84363384	70907176	531	55015											
PABPC5	140886	broad.mit.edu	37	chrX	90690938	90690938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatccatagacaatagggCcctgttttacttattttctg	6	9	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90690938	A	A	90690938	3	1	50	1	0	0	0	0	1	0	0	0	11461	739	26	3	364	3	PABPC5	23	90690938	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	6327554	90690938	64579622	532	55016											
PCDH11X	27328	broad.mit.edu	37	chrX	91133015	91133015	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catggtacagtaggactaatCactgtaactgatcctgatta	8	8	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91133015	A	A	91133015	2	1	50	1	0	0	0	0	0	0	0	1	11602	816	29	3		3	PCDH11X	23	91133015	Silent	SNP	C	TCGA-17-Z017-01A-01W-0746-08	442077	91133015	64137545	533	55017											
PCDH11X	27328	broad.mit.edu	37	chrX	91873562	91873562	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtctgctctccaccacagtCctcctctagtgcaggctact	7	16	3	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91873562	T	T	91873562	3	4	50	1	0	0	0	0	1	0	0	0	11602	855	30	4	3815	4	PCDH11X	23	91873562	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	740547	91873562	63396998	534	55018											
PCDH11X	27328	broad.mit.edu	37	chrX	91873578	91873578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcctcctctagtgcaggCtactgcacttcaccacagcc	7	17	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873578	A	A	91873578	3	1	50	1	0	0	0	0	1	0	0	0	11602	797	28	3	3831	3	PCDH11X	23	91873578	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	16	91873578	63396982	535	55019											
PCDH19	57526	broad.mit.edu	37	chrX	99662938	99662938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatactaaggccaacggtgcCcaggcgcggcgggtcgccac	15	14	0	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99662938	A	A	99662938	3	1	50	1	0	0	0	0	1	0	0	0	11608	623	22	2	2812	2	PCDH19	23	99662938	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	7789360	99662938	55607622	536	55020											
ARMCX3	51566	broad.mit.edu	37	chrX	100879829	100879829	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccactcctaggtcaaCccccagaatcagctcttgtg	6	15	4	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100879829	A	A	100879829	1	1	50	0	1	0	0	0	0	0	0	0	965	522	18	3		3	ARMCX3	23	100879829	5'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1216891	100879829	54390731	537	55021											
H2BFM	286436	broad.mit.edu	37	chrX	103294617	103294617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccagagcatccaggagcCcaaagaggccaactccacga	11	14	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103294617	A	A	103294617	3	1	50	1	0	0	0	0	1	0	0	0	6997	623	22	2	76	2	H2BFM	23	103294617	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2414788	103294617	51975943	538	55022											
RIPPLY1	92129	broad.mit.edu	37	chrX	106145412	106145412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccttggggagtcatttgtGgaagacagccagggcctcca	14	10	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106145412	T	T	106145412	2	4	50	1	0	0	0	0	0	0	0	1	13495	1335	47	2		2	RIPPLY1	23	106145412	Silent	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2850795	106145412	49125148	539	55023											
MORC4	79710	broad.mit.edu	37	chrX	106219857	106219857	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgtttgttgtaggcagGttttaggaaattgcactcaa	11	5	2	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106219857	A	A	106219857	3	1	50	1	0	0	0	0	1	0	0	0	9798	1261	44	4	1735	4	MORC4	23	106219857	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	74445	106219857	49050703	540	55024											
CXorf41	139212	broad.mit.edu	37	chrX	106465909	106465913	+	Intron	DEL	TTTTC	-	-													atatcctcataagttactagTtttcttttctgtgacaggaa							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	106465913	-	-	106465909	6	5	50	0	1	1	0	1	0	0	0	0	4143	1740	60	0		0	CXorf41	23	106465909	Intron	DEL	TTTTC	TCGA-17-Z017-01A-01W-0746-08	246052	106465909	48804651	541	55025											
PAK3	5063	broad.mit.edu	37	chrX	110344683	110344683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctggggggagggggaGgtaagcttcaggaaagctct	20	5	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110344683	T	T	110344683	1	4	50	0	1	0	0	0	0	0	0	0	11496	1015	35	2		2	PAK3	23	110344683	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	3878774	110344683	44925877	542	55026											
IL13RA2	3598	broad.mit.edu	37	chrX	114245312	114245312	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagtctgatgcctccaaatAgggaaatctgcatcctatat	7	9	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114245312	T	T	114245312	3	4	50	1	0	0	0	0	1	0	0	0	7700	420	15	5	561	5	IL13RA2	23	114245312	Missense_Mutation	SNP	A	TCGA-17-Z017-01A-01W-0746-08	3900629	114245312	41025248	543	55027											
KLHL13	90293	broad.mit.edu	37	chrX	117043455	117043455	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactctgtccgccaaccacaTagagaaaatttccaatgacg	6	12	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117043455	C	C	117043455	3	2	50	1	0	0	0	0	1	0	0	0	8440	1406	49	5	804	5	KLHL13	23	117043455	Missense_Mutation	SNP	T	TCGA-17-Z017-01A-01W-0746-08	2798143	117043455	38227105	544	55028											
WDR44	54521	broad.mit.edu	37	chrX	117570673	117570673	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttccccatagaactacttTcttctttcttcttcaatgga	3	11	5	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117570673	C	C	117570673	2	2	50	1	0	0	0	0	0	0	0	1	17423	1780	62	5		5	WDR44	23	117570673	Silent	SNP	T	TCGA-17-Z017-01A-01W-0746-08	527218	117570673	37699887	545	55029											
THOC2	57187	broad.mit.edu	37	chrX	122757644	122757644	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tataattttgttaccccataGccaatgcatatagatctggc	6	9	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122757644	C	C	122757644	3	2	50	1	0	0	0	0	1	0	0	0	15988	971	34	4	1328	4	THOC2	23	122757644	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	5186971	122757644	32512916	546	55030											
ACTRT1	139741	broad.mit.edu	37	chrX	127185705	127185705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggacagtgcaagtgacccCatctccactgtccaccacca	9	16	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127185705	A	A	127185705	3	1	50	1	0	0	0	0	1	0	0	0	218	594	21	2	653	2	ACTRT1	23	127185705	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4428061	127185705	28084855	547	55031											
IGSF1	3547	broad.mit.edu	37	chrX	130415733	130415733	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaactgtaggtccctgtgcCtttcccgtcaacattactga	8	13	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130415733	T	T	130415733	3	4	50	1	0	0	0	0	1	0	0	0	7666	681	24	4	2645	4	IGSF1	23	130415733	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	3230028	130415733	24854827	548	55032											
MAP7D3	79649	broad.mit.edu	37	chrX	135313655	135313655	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgaactatacaacaaaaTatacatattttaatagaaaa	3	5	0	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135313655	A	A	135313655	1	1	50	0	1	0	0	0	0	0	0	0	9361	1421	49	5		5	MAP7D3	23	135313655	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	4897922	135313655	19956905	549	55033											
ARHGEF6	9459	broad.mit.edu	37	chrX	135768072	135768072	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgtggcttctgactcttTggttcccactgagtccctat	9	11	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135768072	C	C	135768072	1	2	50	0	1	0	0	0	0	0	0	0	912	1827	63	5		5	ARHGEF6	23	135768072	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	454417	135768072	19502488	550	55034											
ARHGEF6	9459	broad.mit.edu	37	chrX	135770096	135770096	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaagcatcacctaccatgaGagttttgaatgctacgattg	8	8	1	2			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135770096	C	C	135770096	3	2	50	1	0	0	0	0	1	0	0	0	912	942	33	4	1138	4	ARHGEF6	23	135770096	Missense_Mutation	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2024	135770096	19500464	551	55035											
ARHGEF6	9459	broad.mit.edu	37	chrX	135789374	135789374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactgctttaaactctagcCaccaaacacagttgtaatac	4	13	1	0			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135789374	A	A	135789374	1	1	50	0	1	0	0	0	0	0	0	0	912	609	21	2		2	ARHGEF6	23	135789374	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	19278	135789374	19481186	552	55036											
RBMX	27316	broad.mit.edu	37	chrX	135956613	135956613	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagcactacgtgagttaccTgcagggtcaatggtcaggta	14	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135956613	A	A	135956613	1	1	50	0	1	0	0	0	0	0	0	0	13259	1594	55	5		5	RBMX	23	135956613	Intron	SNP	T	TCGA-17-Z017-01A-01W-0746-08	167239	135956613	19313947	553	55037											
MCF2	4168	broad.mit.edu	37	chrX	138711785	138711785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaacagtcagtgtaaaatGgagataataaacacctctct	7	8	2	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138711785	T	T	138711785	1	4	50	0	1	0	0	0	0	0	0	0	9471	1363	47	2		2	MCF2	23	138711785	Intron	SNP	G	TCGA-17-Z017-01A-01W-0746-08	2755172	138711785	16558775	554	55038											
ATP11C	286410	broad.mit.edu	37	chrX	138880578	138880578	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactcctcacccagctggctCtatgaatttttaagtctata	5	11	3	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138880578	A	A	138880578	1	1	50	0	1	0	0	0	0	0	0	0	1125	928	32	3		3	ATP11C	23	138880578	Intron	SNP	C	TCGA-17-Z017-01A-01W-0746-08	168793	138880578	16389982	555	55039											
MAGEC1	9947	broad.mit.edu	37	chrX	140992842	140992842	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagagctgtaagccggCctttgtcagagccatcatgg	13	9	2	3			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140992842	G	G	140992842	1	3	50	0	1	0	0	0	0	0	0	0	9272	754	26	4		4	MAGEC1	23	140992842	5'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2112264	140992842	14277718	556	55040											
MAGEC1	9947	broad.mit.edu	37	chrX	140995522	140995522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtctcctctccagagaCctgtcagctccttcttctcc	5	18	6	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995522	A	A	140995522	3	1	50	1	0	0	0	0	1	0	0	0	9272	507	18	3	2338	3	MAGEC1	23	140995522	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	2680	140995522	14275038	557	55041											
FMR1NB	158521	broad.mit.edu	37	chrX	147090334	147090335	+	Intron	DNP	GG	TT	TT													gaaatacagggattatgtttGggttctttatgttgaaaata							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	147090335	TT	TT	147090334	1	4	50	0	1	0	0	0	0	0	0	0	6019	1363	47	2		2	FMR1NB	23	147090334	Intron	DNP	GG	TCGA-17-Z017-01A-01W-0746-08	6094812	147090334	8180226	558	55042											
MAGEA5	4104	broad.mit.edu	37	chrX	151283311	151283311	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacagacactgtgctccCtcccaacatacaccttcatc	3	20	1	1			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151283311	A	A	151283311	1	1	50	0	1	0	0	0	0	0	0	0	9259	696	24	2		2	MAGEA5	23	151283311	3'UTR	SNP	C	TCGA-17-Z017-01A-01W-0746-08	4192977	151283311	3987249	559	55043											
MAGEA6	4105	broad.mit.edu	37	chrX	151869625	151869626	+	Missense_Mutation	DNP	CC	AG	AG													cctgacctggagtctgagttCcaagcagcactcagtaggaa							TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	151869626	AG	AG	151869625	3	1	50	1	0	0	0	0	1	0	0	0	9260	854	30	3	317	3	MAGEA6	23	151869625	Missense_Mutation	DNP	CC	TCGA-17-Z017-01A-01W-0746-08	586314	151869625	3400935	560	55044											
SLC6A8	6535	broad.mit.edu	37	chrX	152956967	152956967	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggccaacctcacctgtgaCcagcttgctgaccgccggtc	10	17	1	2	rs143019641	byFrequency	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152956967	G	G	152956967	3	3	50	1	0	0	0	0	1	0	0	0	14804	506	18	4	613	4	SLC6A8	23	152956967	Missense_Mutation	SNP	C	TCGA-17-Z017-01A-01W-0746-08	1087342	152956967	2313593	561	55045											
UBE4B	10277	broad.mit.edu	37	chr1	10118731	10118732	+	Intron	INS	-	T	T													cagctgccgcctgcaggtggINSgcaagggtgcctggcacctg					rs142864591	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10118732	T	T	10118731	6	5	51	0	1	1	1	0	0	0	0	0	17009	1247	43	0		0	UBE4B	1	10118731	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08		10118731	239131890	1	55046											
IGSF21	84966	broad.mit.edu	37	chr1	18581012	18581012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctacccacccattcactggAtcttgacctcctgcctgaac	5	17	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18581012	G	G	18581012	1	3	51	0	1	0	0	0	0	0	0	0	7669	348	12	5		5	IGSF21	1	18581012	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	8462281	18581012	230669609	2	55047											
ALDH4A1	8659	broad.mit.edu	37	chr1	19202827	19202827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctccttcatgatgggctcCtgagggtccttgctctccac	9	15	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19202827	A	A	19202827	3	1	51	1	0	0	0	0	1	0	0	0	501	680	24	2	387	2	ALDH4A1	1	19202827	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	621815	19202827	230047794	3	55048											
HP1BP3	50809	broad.mit.edu	37	chr1	21073988	21073988	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaattaaactgagtgtgTaacttagactataaatttac	5	4	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21073988	A	A	21073988	1	1	51	0	1	0	0	0	0	0	0	0	7395	1653	57	5		5	HP1BP3	1	21073988	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1871161	21073988	228176633	4	55049											
RHD	6007	broad.mit.edu	37	chr1	25632871	25632871	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaccttgttagaaatgctGttagaccccaccccacatcc	8	14	0	2	rs138674175	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25632871	C	C	25632871	1	2	51	0	1	0	0	0	0	0	0	0	13436	1392	48	4		4	RHD	1	25632871	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4558883	25632871	223617750	5	55050											
C1orf94	84970	broad.mit.edu	37	chr1	34636319	34636319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccccttccaccacagcCtgctcagacctgggcttatc	6	20	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34636319	A	A	34636319	1	1	51	0	1	0	0	0	0	0	0	0	2093	696	24	2		2	C1orf94	1	34636319	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9003448	34636319	214614302	6	55051											
GRIK3	2899	broad.mit.edu	37	chr1	37337884	37337884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgagcaaggggcgcgagtCgtcagagtcgatggggagct	18	8	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37337884	A	A	37337884	3	1	51	1	0	0	0	0	1	0	0	0	6841	884	31	3	2174	3	GRIK3	1	37337884	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2701565	37337884	211912737	7	55052											
CCDC30	728621	broad.mit.edu	37	chr1	43110454	43110454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcttagagcgaattataagGagcatccatattcgcagagg	10	7	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43110454	T	T	43110454	3	4	51	1	0	0	0	0	1	0	0	0	2832	1165	41	3	1912	3	CCDC30	1	43110454	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5772570	43110454	206140167	8	55053											
LEPRE1	64175	broad.mit.edu	37	chr1	43220689	43220689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagccgctctgaggactgCattccagggccagccctggg	13	15	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43220689	A	A	43220689	1	1	51	0	1	0	0	0	0	0	0	0	8801	725	25	3		3	LEPRE1	1	43220689	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	110235	43220689	206029932	9	55054											
TIE1	7075	broad.mit.edu	37	chr1	43784882	43784883	+	Intron	DNP	CC	AA	AA													ctccctcatccccagtctctCctgacttctgaccctgccta							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	43784883	AA	AA	43784882	1	1	51	0	1	0	0	0	0	0	0	0	16016	870	30	3		3	TIE1	1	43784882	Intron	DNP	CC	TCGA-17-Z018-01A-01W-0746-08	564193	43784882	205465739	10	55055											
RNF220	55182	broad.mit.edu	37	chr1	44989069	44989069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctttgcctaggtgagctGgcctgaaccctagttgggag	13	11	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44989069	T	T	44989069	1	4	51	0	1	0	0	0	0	0	0	0	13594	1363	47	2		2	RNF220	1	44989069	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1204187	44989069	204261552	11	55056											
ATPAF1	64756	broad.mit.edu	37	chr1	47118364	47118364	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaaaaggccactatcacaTgtaattcaccaagactgaat	5	11	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47118364	C	C	47118364	1	2	51	0	1	0	0	0	0	0	0	0	1204	1479	51	5		5	ATPAF1	1	47118364	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	2129295	47118364	202132257	12	55057											
C8B	732	broad.mit.edu	37	chr1	57422712	57422712	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgaaatgtctgatcatcAttcccccagccccttgtgct	6	15	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57422712	T	T	57422712	1	4	51	0	1	0	0	0	0	0	0	0	2442	232	8	5		5	C8B	1	57422712	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	10304348	57422712	191827909	13	55058											
CYP2J2	1573	broad.mit.edu	37	chr1	60366603	60366603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggctgggagaggggccCtggactcccacacacctgtt	16	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60366603	A	A	60366603	1	1	51	0	1	0	0	0	0	0	0	0	4205	696	24	2		2	CYP2J2	1	60366603	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2943891	60366603	188884018	14	55059											
AK5	26289	broad.mit.edu	37	chr1	77984062	77984062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataatctaagctctttaaaGgcaagggctgcatcccattc	8	10	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77984062	T	T	77984062	1	4	51	0	1	0	0	0	0	0	0	0	443	1015	35	2		2	AK5	1	77984062	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	17617459	77984062	171266559	15	55060											
COL11A1	1301	broad.mit.edu	37	chr1	103400558	103400558	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actggttatgggacagtataCaaatttaatcagggagctgt	11	5	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103400558	G	G	103400558	1	3	51	0	1	0	0	0	0	0	0	0	3699	493	17	4		4	COL11A1	1	103400558	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	25416496	103400558	145850063	16	55061											
COL11A1	1301	broad.mit.edu	37	chr1	103471678	103471678	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctgcacctggacgaccCtaataatgccaacagcatga	7	14	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103471678	A	A	103471678	5	1	51	1	0	0	0	0	0	0	1	0	3699	695	24	2	3887	2	COL11A1	1	103471678	Splice_Site	SNP	C	TCGA-17-Z018-01A-01W-0746-08	71120	103471678	145778943	17	55062											
RBM15	64783	broad.mit.edu	37	chr1	110882461	110882461	+	Frame_Shift_Del	DEL	G	-	-													cgaatcgcgcagcagctcccGgggtggaggcggggagtcac							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110882461	-	-	110882461	7	5	51	1	0	1	0	1	0	0	0	0	13224	1116	39	0	436	0	RBM15	1	110882461	Frame_Shift_Del	DEL	G	TCGA-17-Z018-01A-01W-0746-08	7410783	110882461	138368160	18	55063											
NRAS	4893	broad.mit.edu	37	chr1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcactgtactcttctTgtccagctgtatccagtatg	8	11	3	0	rs11554290		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115256529	A	A	115256529	3	1	51	1	0	0	0	0	1	0	0	0	10735	1812	63	5	399	5	NRAS	1	115256529	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	4374068	115256529	133994092	19	55064											
NOTCH2	4853	broad.mit.edu	37	chr1	120558252	120558252	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcccaaggctccgactacAaacttgtaggtaccccagag	8	13	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120558252	T	T	120558252	1	4	51	0	1	0	0	0	0	0	0	0	10643	145	5	5		5	NOTCH2	1	120558252	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	5301723	120558252	128692369	20	55065											
NBPF9	400818	broad.mit.edu	37	chr1	144596134	144596134	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcttaattttaatgaaatTatactttatcaatcttttcc	1	6	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144596134	C	C	144596134	1	2	51	0	1	0	0	0	0	0	0	0	10294	1769	61	5		5	NBPF9	1	144596134	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	24037882	144596134	104654487	21	55066											
NBPF9	400818	broad.mit.edu	37	chr1	145120424	145120424	+	Intron	DEL	T	-	-													attcactaaaattttagcccTttaaaaaaaaattcctgttt							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145120424	-	-	145120424	6	5	51	0	1	1	0	1	0	0	0	0	10294	1624	56	0		0	NBPF9	1	145120424	Intron	DEL	T	TCGA-17-Z018-01A-01W-0746-08	524290	145120424	104130197	22	55067	262	2									
NBPF9	400818	broad.mit.edu	37	chr1	145120432	145120432	+	Intron	SNP	A	C	C													aaattttagccctttaaaaaAaaattcctgtttttcctatc							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145120432	C	C	145120432	1	2	51	0	1	0	0	0	0	0	0	0	10294	29	1	5		5	NBPF9	1	145120432	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	8	145120432	104130189	23	55068	262	2									
NBPF10	100132406	broad.mit.edu	37	chr1	146233014	146233014	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaagcatggcctcaataTttttgcataaaatgtgctca	7	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146233014	A	A	146233014	1	1	51	0	1	0	0	0	0	0	0	0	10287	1508	52	5		5	NBPF10	1	146233014	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1112582	146233014	103017607	24	55069											
MTMR11	10903	broad.mit.edu	37	chr1	149908042	149908042	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggagagtgatagggcattAttacctgggaggcatctgga	15	5	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149908042	C	C	149908042	1	2	51	0	1	0	0	0	0	0	0	0	10034	464	16	5		5	MTMR11	1	149908042	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	3675028	149908042	99342579	25	55070											
PRUNE	58497	broad.mit.edu	37	chr1	150997258	150997258	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttggacaggcaaactgcAgcccttctgcatggtaaggg	12	10	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150997258	T	T	150997258	2	4	51	1	0	0	0	0	0	0	0	1	12746	175	7	5		5	PRUNE	1	150997258	Silent	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1089216	150997258	98253363	26	55071											
PRUNE	58497	broad.mit.edu	37	chr1	150999611	150999612	+	Intron	INS	-	G	G													cattgccccaaagagaggctINSgtttttccttccttgaccca					rs140963403	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150999612	G	G	150999611	6	5	51	0	1	1	1	0	0	0	0	0	12746	1595	55	0		0	PRUNE	1	150999611	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	2353	150999611	98251010	27	55072											
RPTN	126638	broad.mit.edu	37	chr1	152128369	152128369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctctgtctgaccataGtgagaactttggtcttgtct	9	9	5	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152128369	T	T	152128369	3	4	51	1	0	0	0	0	1	0	0	0	13775	1020	36	3	1152	3	RPTN	1	152128369	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1128758	152128369	97122252	28	55073											
FLG	2312	broad.mit.edu	37	chr1	152276134	152276134	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgagtgcctggagctgtctCgtgcctgctcgtggcgggat	16	11	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152276134	T	T	152276134	3	4	51	1	0	0	0	0	1	0	0	0	5979	884	31	4	961	4	FLG	1	152276134	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	147765	152276134	96974487	29	55074											
FLG	2312	broad.mit.edu	37	chr1	152277156	152277156	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtccagtgctggtcctggtCcgcccatgggcagactcaga	13	14	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152277156	T	T	152277156	2	4	51	1	0	0	0	0	0	0	0	1	5979	842	30	4		4	FLG	1	152277156	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1022	152277156	96973465	30	55075											
SPRR4	163778	broad.mit.edu	37	chr1	152944661	152944661	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctaccagatggaaccttcTcttcttccttctcctcttcc	5	16	4	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152944661	A	A	152944661	1	1	51	0	1	0	0	0	0	0	0	0	15222	1566	54	5		5	SPRR4	1	152944661	3'UTR	SNP	T	TCGA-17-Z018-01A-01W-0746-08	667505	152944661	96305960	31	55076											
RHBG	57127	broad.mit.edu	37	chr1	156347250	156347250	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttctccactccttccacGgtggccacatccatgttggc	8	16	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156347250	A	A	156347250	3	1	51	1	0	0	0	0	1	0	0	0	13433	1116	39	4	352	4	RHBG	1	156347250	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3402589	156347250	92903371	32	55077											
IQGAP3	128239	broad.mit.edu	37	chr1	156510566	156510566	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgttgaggtcctgctcCagctgctgattggatcggat	13	8	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156510566	A	A	156510566	2	1	51	1	0	0	0	0	0	0	0	1	7886	581	21	2		2	IQGAP3	1	156510566	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	163316	156510566	92740055	33	55078											
NES	10763	broad.mit.edu	37	chr1	156640943	156640943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctcagggctctctgggtGcccctcgcctgggatccaga	15	14	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156640943	T	T	156640943	3	4	51	1	0	0	0	0	1	0	0	0	10432	1319	46	3	1832	3	NES	1	156640943	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	130377	156640943	92609678	34	55079											
CD1B	910	broad.mit.edu	37	chr1	158300520	158300520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcatcagagagagcaaCactttgcaaaaaagagagaa	10	6	1	5			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158300520	A	A	158300520	1	1	51	0	1	0	0	0	0	0	0	0	3005	493	17	3		3	CD1B	1	158300520	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1659577	158300520	90950101	35	55080											
SPTA1	6708	broad.mit.edu	37	chr1	158626316	158626316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttctttttctttgtggtGggaagtgtgaatcctgtcat	10	5	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158626316	T	T	158626316	1	4	51	0	1	0	0	0	0	0	0	0	15234	1363	47	2		2	SPTA1	1	158626316	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	325796	158626316	90624305	36	55081											
SPTA1	6708	broad.mit.edu	37	chr1	158637981	158637981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaagataaaagggggaaGtttcctagtccaacgtttga	11	6	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158637981	T	T	158637981	1	4	51	0	1	0	0	0	0	0	0	0	15234	1044	36	3		3	SPTA1	1	158637981	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	11665	158637981	90612640	37	55082											
OR6K2	81448	broad.mit.edu	37	chr1	158670181	158670181	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgaaggaaatgctcctctCactaagcaggctagacagca	9	10	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158670181	T	T	158670181	3	4	51	1	0	0	0	0	1	0	0	0	11296	835	29	4	716	4	OR6K2	1	158670181	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	32200	158670181	90580440	38	55083											
CRP	1401	broad.mit.edu	37	chr1	159683210	159683210	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcccagagacagagacGtgggaaccatgcagtgtaaa	13	8	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159683210	T	T	159683210	1	4	51	0	1	0	0	0	0	0	0	0	3927	1160	40	3		3	CRP	1	159683210	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1013029	159683210	89567411	39	55084											
ADCY10	55811	broad.mit.edu	37	chr1	167819935	167819936	+	Intron	INS	-	TGTGTA	TGTGTA													tgtgtgtgtgtgtgtgtgtgINStgtgtgtgtgttgggagtag					rs79342040	byFrequency	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGTGTA	167819936	TGTGTA	TGTGTA	167819935	6	5	51	0	1	1	1	0	0	0	0	0	293	1392	48	0		0	ADCY10	1	167819935	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	8136725	167819935	81430686	40	55085											
TBX19	9095	broad.mit.edu	37	chr1	168262523	168262524	+	Intron	INS	-	TGTT	TGTT													tcagaatgaggaggtaagagINStgtgtgtgtgtgtgtgtgtg					rs140890330	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGTT	168262524	TGTT	TGTT	168262523	6	5	51	0	1	1	1	0	0	0	0	0	15776	1044	36	0		0	TBX19	1	168262523	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	442588	168262523	80988098	41	55086											
C1orf112	55732	broad.mit.edu	37	chr1	169743863	169743864	+	Intron	INS	-	A	A													tgctaaaagcaattcaaaacINSaaaaaacataaactatgcat					rs148914091	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169743864	A	A	169743863	6	5	51	0	1	1	1	0	0	0	0	0	2005	493	17	0		0	C1orf112	1	169743863	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	1481340	169743863	79506758	42	55087											
C1orf9	51430	broad.mit.edu	37	chr1	172571920	172571920	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtctctacagttaactggCaaagaaggtagatttctgtg	10	6	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172571920	T	T	172571920	2	4	51	1	0	0	0	0	0	0	0	1	2089	697	25	4		4	C1orf9	1	172571920	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2828057	172571920	76678701	43	55088											
TNR	7143	broad.mit.edu	37	chr1	175521730	175521730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaaactatctgctacttcAtgggctgactgaagccatct	7	12	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175521730	T	T	175521730	1	4	51	0	1	0	0	0	0	0	0	0	16461	232	8	5		5	TNR	1	175521730	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2949810	175521730	73728891	44	55089											
TNR	7143	broad.mit.edu	37	chr1	175644572	175644572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatgactccccttaacCacacaggtgcatgcacacac	5	16	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175644572	A	A	175644572	1	1	51	0	1	0	0	0	0	0	0	0	16461	609	21	2		2	TNR	1	175644572	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	122842	175644572	73606049	45	55090											
TNR	7143	broad.mit.edu	37	chr1	175676060	175676060	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaggtcctggagataaggCctgactgggattcttacccc	13	10	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175676060	G	G	175676060	1	3	51	0	1	0	0	0	0	0	0	0	16461	754	26	4		4	TNR	1	175676060	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	31488	175676060	73574561	46	55091											
PAPPA2	60676	broad.mit.edu	37	chr1	176811648	176811648	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaagaaagagaggccgaCccaggaggaaacaaagggtg	15	7	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176811648	A	A	176811648	1	1	51	0	1	0	0	0	0	0	0	0	11527	522	18	3		3	PAPPA2	1	176811648	3'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1135588	176811648	72438973	47	55092											
SEC16B	89866	broad.mit.edu	37	chr1	177906203	177906203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgaaaactagcaggcCctccgtaacgggcacacatc	11	13	0	1	rs146318029	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177906203	A	A	177906203	1	1	51	0	1	0	0	0	0	0	0	0	14100	638	22	2		2	SEC16B	1	177906203	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1094555	177906203	71344418	48	55093											
FAM163A	148753	broad.mit.edu	37	chr1	179782862	179782862	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacgctcaaaaatgcatGgggcggggggagcattcacc	15	10	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179782862	C	C	179782862	1	2	51	0	1	0	0	0	0	0	0	0	5522	1363	47	4		4	FAM163A	1	179782862	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1876659	179782862	69467759	49	55094											
XPR1	9213	broad.mit.edu	37	chr1	180775252	180775252	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaagcatgacaagatcctgGaaacatctcgtggagcagat	10	8	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180775252	T	T	180775252	4	4	51	1	0	0	0	0	0	1	0	0	17578	1175	41	3	520	3	XPR1	1	180775252	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	992390	180775252	68475369	50	55095											
RNASEL	6041	broad.mit.edu	37	chr1	182554508	182554508	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggtgggtgtatccacaGgacaagtgtagttcttgaac	12	8	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182554508	A	A	182554508	2	1	51	1	0	0	0	0	0	0	0	1	13527	987	35	4		4	RNASEL	1	182554508	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1779256	182554508	66696113	51	55096											
KCNT2	343450	broad.mit.edu	37	chr1	196553118	196553118	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttacatggtgggatgttgcCacgtaagtttccagaagtag	13	6	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196553118	T	T	196553118	1	4	51	0	1	0	0	0	0	0	0	0	8162	609	21	4		4	KCNT2	1	196553118	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	13998610	196553118	52697503	52	55097											
PTPRC	5788	broad.mit.edu	37	chr1	198668535	198668535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgcctgtcactttccaGccaagcaaatttaaatactg	7	11	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198668535	T	T	198668535	1	4	51	0	1	0	0	0	0	0	0	0	12905	986	34	3		3	PTPRC	1	198668535	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2115417	198668535	50582086	53	55098											
PTPRC	5788	broad.mit.edu	37	chr1	198677294	198677294	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagttacatgattgtacaCaagttgaaaaagcagatact	7	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198677294	A	A	198677294	3	1	51	1	0	0	0	0	1	0	0	0	12905	479	17	3	976	3	PTPRC	1	198677294	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	8759	198677294	50573327	54	55099											
CHIT1	1118	broad.mit.edu	37	chr1	203192352	203192352	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcgttccttccctgaGgtctgggcttcctgctggaa	13	11	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203192352	A	A	203192352	2	1	51	1	0	0	0	0	0	0	0	1	3377	987	35	4		4	CHIT1	1	203192352	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4515058	203192352	46058269	55	55100											
REN	5972	broad.mit.edu	37	chr1	204124180	204124180	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccaatgcggttgttacgCcgatcaaactctgtgtagaa	10	9	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204124180	A	A	204124180	2	1	51	1	0	0	0	0	0	0	0	1	13332	726	26	3		3	REN	1	204124180	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	931828	204124180	45126441	56	55101											
IL10	3586	broad.mit.edu	37	chr1	206945577	206945577	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatgtctagttcaggcagtCccaggaagagagaaaggaca	13	7	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206945577	A	A	206945577	1	1	51	0	1	0	0	0	0	0	0	0	7689	870	30	3		3	IL10	1	206945577	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2821397	206945577	42305044	57	55102											
IL19	29949	broad.mit.edu	37	chr1	207009977	207009977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgccctccactcttggctGgacagctgacttcctctcct	7	16	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207009977	T	T	207009977	1	4	51	0	1	0	0	0	0	0	0	0	7719	1363	47	2		2	IL19	1	207009977	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	64400	207009977	42240644	58	55103											
KCNK2	3776	broad.mit.edu	37	chr1	215345469	215345469	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggctggagtgccctggacGccatttattttgtggttatc	12	8	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215345469	C	C	215345469	3	2	51	1	0	0	0	0	1	0	0	0	8136	1087	38	4	827	4	KCNK2	1	215345469	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	8335492	215345469	33905152	59	55104											
USH2A	7399	broad.mit.edu	37	chr1	216260027	216260027	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggttctattctaagtttgGatgacaacatataatatacc	6	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216260027	T	T	216260027	1	4	51	0	1	0	0	0	0	0	0	0	17162	1189	41	3		3	USH2A	1	216260027	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	914558	216260027	32990594	60	55105											
CNIH3	149111	broad.mit.edu	37	chr1	224872688	224872688	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaaagggggaggtgggaGcaagtgatcagttctttgga	19	3	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224872688	A	A	224872688	1	1	51	0	1	0	0	0	0	0	0	0	3636	986	34	4		4	CNIH3	1	224872688	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	8612661	224872688	24377933	61	55106											
CDC42BPA	8476	broad.mit.edu	37	chr1	227504937	227504937	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattatgatgacttttactAttatctgaacctaaatttta	3	5	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227504937	G	G	227504937	1	3	51	0	1	0	0	0	0	0	0	0	3102	464	16	5		5	CDC42BPA	1	227504937	5'UTR	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2632249	227504937	21745684	62	55107											
DISC1	27185	broad.mit.edu	37	chr1	232147907	232147907	+	Intron	DEL	G	-	-													catgcataatgctagcaacaGctatttgtttgtatgactca					rs35392101		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	232147907	-	-	232147907	6	5	51	0	1	1	0	1	0	0	0	0	4578	986	34	0		0	DISC1	1	232147907	Intron	DEL	G	TCGA-17-Z018-01A-01W-0746-08	4642970	232147907	17102714	63	55108											
HEATR1	55127	broad.mit.edu	37	chr1	236749753	236749753	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcttaagtacctcgtacCtaaaagacatgcaagcacac	5	12	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236749753	A	A	236749753	5	1	51	1	0	0	0	0	0	0	1	0	7094	695	24	2	4843	2	HEATR1	1	236749753	Splice_Site	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4601846	236749753	12500868	64	55109											
ACTN2	88	broad.mit.edu	37	chr1	236906437	236906437	+	Intron	SNP	T	A	A													tactaactctgtgcctaatgTctgtgacactaaaggtaggt							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236906437	A	A	236906437	1	1	51	0	1	0	0	0	0	0	0	0	205	1682	58	5		5	ACTN2	1	236906437	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	156684	236906437	12344184	65	55110	263	2									
ACTN2	88	broad.mit.edu	37	chr1	236906446	236906446	+	Intron	SNP	C	A	A													tgtgcctaatgtctgtgacaCtaaaggtaggtgtcgtcacc							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236906446	A	A	236906446	1	1	51	0	1	0	0	0	0	0	0	0	205	580	20	3		3	ACTN2	1	236906446	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9	236906446	12344175	66	55111	263	2									
RYR2	6262	broad.mit.edu	37	chr1	237446193	237446193	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttctgctgaggggtaaaGtcaggtttcaaatgccatgt	13	6	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237446193	T	T	237446193	1	4	51	0	1	0	0	0	0	0	0	0	13880	1044	36	3		3	RYR2	1	237446193	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	539747	237446193	11804428	67	55112											
RYR2	6262	broad.mit.edu	37	chr1	237550672	237550672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagctcaggaagtgaggCagcccaaggtaaaaactcca	10	10	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237550672	A	A	237550672	3	1	51	1	0	0	0	0	1	0	0	0	13880	710	25	3	702	3	RYR2	1	237550672	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	104479	237550672	11699949	68	55113											
ZP4	57829	broad.mit.edu	37	chr1	238048570	238048570	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagatccaaggctttctgGacagggatcagctgggtctg	15	8	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048570	T	T	238048570	2	4	51	1	0	0	0	0	0	0	0	1	18347	1161	41	3		3	ZP4	1	238048570	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	497898	238048570	11202051	69	55114											
FMN2	56776	broad.mit.edu	37	chr1	240306915	240306915	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctaccagtgtgttggcaaAactgcggaatggctctgatg	12	8	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240306915	C	C	240306915	1	2	51	0	1	0	0	0	0	0	0	0	6008	29	1	5		5	FMN2	1	240306915	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2258345	240306915	8943706	70	55115											
FMN2	56776	broad.mit.edu	37	chr1	240307250	240307250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatggaaccaagtctcatGgtgttgctgttgtggagaac	13	6	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240307250	T	T	240307250	1	4	51	0	1	0	0	0	0	0	0	0	6008	1363	47	2		2	FMN2	1	240307250	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	335	240307250	8943371	71	55116											
AKT3	10000	broad.mit.edu	37	chr1	244006380	244006380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaagacaccactcactgCtagcactcttaccaaccgta	4	15	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244006380	A	A	244006380	1	1	51	0	1	0	0	0	0	0	0	0	481	812	28	3		3	AKT3	1	244006380	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3699130	244006380	5244241	72	55117											
NLRP3	114548	broad.mit.edu	37	chr1	247608106	247608106	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgaaacagcagagctgCctcctgcagaacctggggtg	14	11	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247608106	A	A	247608106	4	1	51	1	0	0	0	0	0	1	0	0	10573	747	26	3	3024	3	NLRP3	1	247608106	Nonsense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3601726	247608106	1642515	73	55118											
C1orf150	148823	broad.mit.edu	37	chr1	247726866	247726866	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggagaacctggagtatcTcatgttactatctctttcct	7	9	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247726866	A	A	247726866	1	1	51	0	1	0	0	0	0	0	0	0	2024	1566	54	5		5	C1orf150	1	247726866	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	118760	247726866	1523755	74	55119											
OR2T6	254879	broad.mit.edu	37	chr1	248551426	248551426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgttctgtgcctctcacCaaatcaatcactttttctgt	4	14	5	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248551426	A	A	248551426	3	1	51	1	0	0	0	0	1	0	0	0	11123	595	21	2	519	2	OR2T6	1	248551426	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	824560	248551426	699195	75	55120											
MYT1L	23040	broad.mit.edu	37	chr2	1813026	1813026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagcaaggcgtagaataGcattattaggttggttgcca	13	5	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1813026	T	T	1813026	1	4	51	0	1	0	0	0	0	0	0	0	10201	986	34	3		3	MYT1L	2	1813026	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08		1813026	241386347	76	55121											
MYT1L	23040	broad.mit.edu	37	chr2	1842979	1842979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtcgcatcctggcgtggGgcaggacatgccttccgtct	14	14	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1842979	T	T	1842979	3	4	51	1	0	0	0	0	1	0	0	0	10201	1232	43	2	558	2	MYT1L	2	1842979	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	29953	1842979	241356394	77	55122											
APOB	338	broad.mit.edu	37	chr2	21233632	21233632	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcatctctaaagcatcaatGatattgatgggctcactgag	8	9	4	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21233632	T	T	21233632	2	4	51	1	0	0	0	0	0	0	0	1	787	1280	45	3		3	APOB	2	21233632	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	19390653	21233632	221965741	78	55123											
C2orf28	51374	broad.mit.edu	37	chr2	27436173	27436173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccatcttggggtgaggGgaagacatccctagatgctg	15	9	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27436173	T	T	27436173	1	4	51	0	1	0	0	0	0	0	0	0	2182	1247	43	2		2	C2orf28	2	27436173	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	6202541	27436173	215763200	79	55124											
SNX17	9784	broad.mit.edu	37	chr2	27596077	27596077	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggggagccaagagtgagtGctaagttcctgtaataatgt	13	6	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27596077	C	C	27596077	1	2	51	0	1	0	0	0	0	0	0	0	15002	1334	46	4		4	SNX17	2	27596077	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	159904	27596077	215603296	80	55125											
DHX57	90957	broad.mit.edu	37	chr2	39038463	39038463	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatcgttcccctttcccatGgcactgtgggacacatactt	8	13	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39038463	A	A	39038463	1	1	51	0	1	0	0	0	0	0	0	0	4553	1363	47	4		4	DHX57	2	39038463	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	11442386	39038463	204160910	81	55126											
EPAS1	2034	broad.mit.edu	37	chr2	46574181	46574182	+	Frame_Shift_Del	DEL	AC	-	-													tggcaatcagcttcctgcgaAcacacaagctcctctcctca							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46574182	-	-	46574181	7	5	51	1	0	1	0	1	0	0	0	0	5192	43	2	0	202	0	EPAS1	2	46574181	Frame_Shift_Del	DEL	AC	TCGA-17-Z018-01A-01W-0746-08	7535718	46574181	196625192	82	55127											
NRXN1	9378	broad.mit.edu	37	chr2	50692594	50692594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacggtcattgcagagtGgtccactgaaggaagtcata	11	8	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50692594	T	T	50692594	3	4	51	1	0	0	0	0	1	0	0	0	10760	1348	47	2	1464	2	NRXN1	2	50692594	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4118413	50692594	192506779	83	55128											
EHBP1	23301	broad.mit.edu	37	chr2	63217959	63217959	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagctgtaactgagagctCagagcaggacatgaaagtaa	12	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63217959	T	T	63217959	3	4	51	1	0	0	0	0	1	0	0	0	5015	838	29	4	2996	4	EHBP1	2	63217959	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	12525365	63217959	179981414	84	55129											
SNRNP27	11017	broad.mit.edu	37	chr2	70129937	70129937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttctgcttttcttctgCttcttccccttccgctgctg	5	16	5	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70129937	A	A	70129937	1	1	51	0	1	0	0	0	0	0	0	0	14968	812	28	3		3	SNRNP27	2	70129937	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	6911978	70129937	173069436	85	55130											
ALMS1	7840	broad.mit.edu	37	chr2	73675893	73675893	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttactaaagtttcagccactCctggaccagctgaccagaag	8	12	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73675893	T	T	73675893	3	4	51	1	0	0	0	0	1	0	0	0	535	855	30	4	2266	4	ALMS1	2	73675893	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3545956	73675893	169523480	86	55131											
TACR1	6869	broad.mit.edu	37	chr2	75313849	75313849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagggactaaattattgCaaatggaatccaaaaataag	7	4	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75313849	A	A	75313849	1	1	51	0	1	0	0	0	0	0	0	0	15624	725	25	3		3	TACR1	2	75313849	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1637956	75313849	167885524	87	55132											
LRRTM4	80059	broad.mit.edu	37	chr2	77563362	77563362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaggaaagaaaggaaGgaaggaagaaaggaaagaag	17	0	0	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77563362	T	T	77563362	1	4	51	0	1	0	0	0	0	0	0	0	9129	1015	35	2		2	LRRTM4	2	77563362	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2249513	77563362	165636011	88	55133											
REG3G	130120	broad.mit.edu	37	chr2	79255449	79255449	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcgtgcagctcatcatGgacatgagaccagtgtgaag	13	9	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79255449	T	T	79255449	1	4	51	0	1	0	0	0	0	0	0	0	13321	1363	47	2		2	REG3G	2	79255449	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1692087	79255449	163943924	89	55134											
TMEM150A	129303	broad.mit.edu	37	chr2	85828980	85828981	+	Intron	INS	-	C	C													gcgtcatcaagctcctgttgINSccccccgggcaccccccttt							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85828981	C	C	85828980	6	5	51	0	1	1	1	0	0	0	0	0	16190	1334	46	0		0	TMEM150A	2	85828980	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	6573531	85828980	157370393	90	55135											
SMYD1	150572	broad.mit.edu	37	chr2	88367564	88367564	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctcctgttagtttggctGgggccaaactctaaaatact	8	10	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88367564	A	A	88367564	1	1	51	0	1	0	0	0	0	0	0	0	14935	1363	47	4		4	SMYD1	2	88367564	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2538584	88367564	154831809	91	55136											
TBC1D8	11138	broad.mit.edu	37	chr2	101666962	101666962	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcggccagctgctccatgAccttaaacacctcatccagg	8	16	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101666962	G	G	101666962	3	3	51	1	0	0	0	0	1	0	0	0	15747	275	10	5	2758	5	TBC1D8	2	101666962	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	13299398	101666962	141532411	92	55137											
ACOXL	55289	broad.mit.edu	37	chr2	111789245	111789245	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttccatgcctggaactcGtgtctgcaccacgtggcttc	9	13	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111789245	T	T	111789245	2	4	51	1	0	0	0	0	0	0	0	1	161	1132	40	3		3	ACOXL	2	111789245	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	10122283	111789245	131410128	93	55138											
DPP10	57628	broad.mit.edu	37	chr2	116066789	116066789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttggagcatgaataattaCaaaacttttttttctatctc	4	7	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116066789	A	A	116066789	1	1	51	0	1	0	0	0	0	0	0	0	4767	493	17	3		3	DPP10	2	116066789	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4277544	116066789	127132584	94	55139											
POTEF	728378	broad.mit.edu	37	chr2	130877663	130877663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaggcagctctgtggagCttgtccagatcttctccacg	10	14	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130877663	A	A	130877663	3	1	51	1	0	0	0	0	1	0	0	0	12361	796	28	3	2861	3	POTEF	2	130877663	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	14810874	130877663	112321710	95	55140											
LRP1B	53353	broad.mit.edu	37	chr2	141115516	141115516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagttagacttgtgtatcCcggtgctttgcttaacagaa	10	7	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141115516	A	A	141115516	1	1	51	0	1	0	0	0	0	0	0	0	9042	638	22	2		2	LRP1B	2	141115516	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	10237853	141115516	102083857	96	55141											
LRP1B	53353	broad.mit.edu	37	chr2	141330703	141330704	+	Intron	DEL	AA	-	-													ttgaatatttccaaatagttAaaagagtgaattttcaatgt							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141330704	-	-	141330703	6	5	51	0	1	1	0	1	0	0	0	0	9042	377	13	0		0	LRP1B	2	141330703	Intron	DEL	AA	TCGA-17-Z018-01A-01W-0746-08	215187	141330703	101868670	97	55142											
NEB	4703	broad.mit.edu	37	chr2	152427080	152427080	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagccggacatcacagccCgccttcatttcatcccagcc	6	19	3	0	rs140688592	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152427080	T	T	152427080	2	4	51	1	0	0	0	0	0	0	0	1	10397	639	23	4		4	NEB	2	152427080	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	11096377	152427080	90772293	98	55143											
KCNJ3	3760	broad.mit.edu	37	chr2	155711558	155711558	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggaagagaagactttccCaaaaaactcttgaggatgag	10	7	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155711558	T	T	155711558	2	4	51	1	0	0	0	0	0	0	0	1	8122	581	21	4		4	KCNJ3	2	155711558	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3284478	155711558	87487815	99	55144											
FAP	2191	broad.mit.edu	37	chr2	163044886	163044887	+	Intron	INS	-	A	A													accatacctaaaggaaaaacINSaaaaaaaacaagaatctttg							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163044887	A	A	163044886	6	5	51	0	1	1	1	0	0	0	0	0	5730	493	17	0		0	FAP	2	163044886	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	7333328	163044886	80154487	100	55145											
KCNH7	90134	broad.mit.edu	37	chr2	163360882	163360882	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgacagtcatttataagaaAaagaatatgtttcatggtgc	8	6	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163360882	T	T	163360882	1	4	51	0	1	0	0	0	0	0	0	0	8107	29	1	5		5	KCNH7	2	163360882	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	315996	163360882	79838491	101	55146											
SCN3A	6328	broad.mit.edu	37	chr2	166018882	166018882	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaaacataaaagtgacCtgttaatacaaaaaaaaacc	3	8	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166018882	A	A	166018882	5	1	51	1	0	0	0	0	0	0	1	0	14031	695	24	2	5115	2	SCN3A	2	166018882	Splice_Site	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2658000	166018882	77180491	102	55147											
XIRP2	129446	broad.mit.edu	37	chr2	167759885	167759885	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttactaagacccaaaccCcaagagctggtgctcctaga	7	13	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167759885	A	A	167759885	1	1	51	0	1	0	0	0	0	0	0	0	17557	638	22	2		2	XIRP2	2	167759885	5'Flank	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1741003	167759885	75439488	103	55148											
DHRS9	10170	broad.mit.edu	37	chr2	169938310	169938310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagctttaaaggcagaaacCtcagagagacttcgtactgt	9	9	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169938310	A	A	169938310	2	1	51	1	0	0	0	0	0	0	0	1	4538	668	24	2		2	DHRS9	2	169938310	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2178425	169938310	73261063	104	55149											
TTN	7273	broad.mit.edu	37	chr2	179611535	179611535	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaatgaagcctagtgttgTgttttcatataccttccttt	6	8	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179611535	A	A	179611535	3	1	51	1	0	0	0	0	1	0	0	0	16861	1696	59	5	94705	5	TTN	2	179611535	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	9673225	179611535	63587838	105	55150											
ZNF804A	91752	broad.mit.edu	37	chr2	185803625	185803625	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caacttttgttgctcctcctCagatgccaatcattccagct	5	14	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185803625	T	T	185803625	4	4	51	1	0	0	0	0	0	1	0	0	18299	827	29	4	3516	4	ZNF804A	2	185803625	Nonsense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	6192090	185803625	57395748	106	55151											
CALCRL	10203	broad.mit.edu	37	chr2	188217032	188217032	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggtgatgagaacgcgtaCaatatttaacaagaaaaaaa	8	5	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	188217032	G	G	188217032	3	3	51	1	0	0	0	0	1	0	0	0	2606	478	17	4	460	4	CALCRL	2	188217032	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2413407	188217032	54982341	107	55152											
CALCRL	10203	broad.mit.edu	37	chr2	188228028	188228028	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtacttaattatacacAttatgcatatatcagccatg	5	7	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188228028	T	T	188228028	1	4	51	0	1	0	0	0	0	0	0	0	2606	232	8	5		5	CALCRL	2	188228028	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	10996	188228028	54971345	108	55153											
TFPI	7035	broad.mit.edu	37	chr2	188349011	188349011	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatatttggactcatgaagCgtacaacagttaaaaaagca	7	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	188349011	G	G	188349011	1	3	51	0	1	0	0	0	0	0	0	0	15931	783	27	4		4	TFPI	2	188349011	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	120983	188349011	54850362	109	55154											
CDK15	65061	broad.mit.edu	37	chr2	202698422	202698423	+	Intron	INS	-	TCTTCTTCT	TCTTCTTCT													tccccctctgaatgtaaaaaINStcttcttcttcttcttcttt					rs66588345		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCTTCTTCT	202698423	TCTTCTTCT	TCTTCTTCT	202698422	6	5	51	0	1	1	1	0	0	0	0	0	3161	116	4	0		0	CDK15	2	202698422	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	14349411	202698422	40500951	110	55155											
ZDBF2	57683	broad.mit.edu	37	chr2	207169707	207169707	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagcccttggagtttgTtcataaaattggggccagtg	13	8	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207169707	C	C	207169707	3	2	51	1	0	0	0	0	1	0	0	0	17725	1725	60	5	465	5	ZDBF2	2	207169707	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	4471285	207169707	36029666	111	55156											
ABCA12	26154	broad.mit.edu	37	chr2	215848372	215848372	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattcctgtcttaacttgccTttttacttcctcgtggagct	6	12	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215848372	G	G	215848372	2	3	51	1	0	0	0	0	0	0	0	1	30	1623	56	5		5	ABCA12	2	215848372	Silent	SNP	T	TCGA-17-Z018-01A-01W-0746-08	8678665	215848372	27351001	112	55157											
FN1	2335	broad.mit.edu	37	chr2	216242739	216242739	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagggccttgctatttgccCgggtaggtctcaaactcctg	11	12	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216242739	G	G	216242739	1	3	51	0	1	0	0	0	0	0	0	0	6020	667	23	4		4	FN1	2	216242739	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	394367	216242739	26956634	113	55158											
TRIP12	9320	broad.mit.edu	37	chr2	230654475	230654475	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgatactgatgggcacactCcatctaaaggacaaaagatc	8	9	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230654475	T	T	230654475	3	4	51	1	0	0	0	0	1	0	0	0	16681	855	30	4	1704	4	TRIP12	2	230654475	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	14411736	230654475	12544898	114	55159											
SP100	6672	broad.mit.edu	37	chr2	231363570	231363570	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaacctatgtaattcacAagtgatgtagctgtccctcc	6	11	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231363570	T	T	231363570	1	4	51	0	1	0	0	0	0	0	0	0	15074	145	5	5		5	SP100	2	231363570	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	709095	231363570	11835803	115	55160											
C2orf57	165100	broad.mit.edu	37	chr2	232458213	232458213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaatggccagcatggccCtcaggctgccagcaccacca	10	17	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232458213	A	A	232458213	3	1	51	1	0	0	0	0	1	0	0	0	2200	681	24	2	553	2	C2orf57	2	232458213	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1094643	232458213	10741160	116	55161											
TRPM8	79054	broad.mit.edu	37	chr2	234851353	234851353	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagcagcttggggcatggtCtccaaccgggacaccctcat	11	13	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234851353	A	A	234851353	2	1	51	1	0	0	0	0	0	0	0	1	16717	900	32	3		3	TRPM8	2	234851353	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2393140	234851353	8348020	117	55162											
COL6A3	1293	broad.mit.edu	37	chr2	238280775	238280775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgctgcaccgcgttctgCacttcatccttgctggaatg	10	14	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238280775	A	A	238280775	2	1	51	1	0	0	0	0	0	0	0	1	3733	697	25	3		3	COL6A3	2	238280775	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3429422	238280775	4918598	118	55163											
OR6B3	150681	broad.mit.edu	37	chr2	240984737	240984737	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaaaagcaaggctgtataGaagacggtgaccacggtgag	14	6	0	5			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240984737	T	T	240984737	3	4	51	1	0	0	0	0	1	0	0	0	11283	933	33	3	245	3	OR6B3	2	240984737	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2703962	240984737	2214636	119	55164											
SYN2	6854	broad.mit.edu	37	chr3	12187427	12187427	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcaagatgcagtaggccCcagccccaggagggtcccta	12	14	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12187427	T	T	12187427	1	4	51	0	1	0	0	0	0	0	0	0	15560	638	22	4		4	SYN2	3	12187427	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08		12187427	185835003	120	55165											
GRIP2	80852	broad.mit.edu	37	chr3	14561794	14561794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggctccgctcctggccaGgcaggggagtgaaggcggag	19	11	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14561794	T	T	14561794	1	4	51	0	1	0	0	0	0	0	0	0	6854	1015	35	2		2	GRIP2	3	14561794	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2374367	14561794	183460636	121	55166											
GALNTL2	117248	broad.mit.edu	37	chr3	16261170	16261170	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctcagaggccttgggtccAtcccgtgcctccatgccagt	11	16	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16261170	T	T	16261170	1	4	51	0	1	0	0	0	0	0	0	0	6284	232	8	5		5	GALNTL2	3	16261170	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1699376	16261170	181761260	122	55167											
LRRC3B	116135	broad.mit.edu	37	chr3	26751695	26751695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgtaaaacgtccgtgttgGatgaacatgctggcagacca	11	9	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26751695	T	T	26751695	3	4	51	1	0	0	0	0	1	0	0	0	9083	1174	41	3	534	3	LRRC3B	3	26751695	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	10490525	26751695	171270735	123	55168											
SCN5A	6331	broad.mit.edu	37	chr3	38592784	38592784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttggcgaaggtctggaaGttgaacatgtcgtcgatgcc	14	8	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38592784	T	T	38592784	3	4	51	1	0	0	0	0	1	0	0	0	14035	1020	36	3	975	3	SCN5A	3	38592784	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	11841089	38592784	159429646	124	55169											
SCN10A	6336	broad.mit.edu	37	chr3	38743392	38743392	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccatttgtgaagtagtacTgcctcaaagcgaacatcttc	8	10	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38743392	A	A	38743392	3	1	51	1	0	0	0	0	1	0	0	0	14025	1580	55	5	1283	5	SCN10A	3	38743392	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	150608	38743392	159279038	125	55170											
SCN10A	6336	broad.mit.edu	37	chr3	38760394	38760394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagactgatagggaaggacCcagccagccctgaccacagt	11	14	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38760394	A	A	38760394	1	1	51	0	1	0	0	0	0	0	0	0	14025	638	22	2		2	SCN10A	3	38760394	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	17002	38760394	159262036	126	55171											
TRAK1	22906	broad.mit.edu	37	chr3	42202060	42202061	+	Intron	DEL	TG	-	-													tcatagcactgttttgttttTgtttttttttaagttgaggt					rs59260540		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42202061	-	-	42202060	6	5	51	0	1	1	0	1	0	0	0	0	16573	1827	63	0		0	TRAK1	3	42202060	Intron	DEL	TG	TCGA-17-Z018-01A-01W-0746-08	3441666	42202060	155820370	127	55172											
ZNF167	55888	broad.mit.edu	37	chr3	44619311	44619311	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgcccacagttaacgatgAcaacaacagcagtaaaacaa	6	11	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44619311	G	G	44619311	1	3	51	0	1	0	0	0	0	0	0	0	17867	290	10	5		5	ZNF167	3	44619311	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2417251	44619311	153403119	128	55173											
ZNF502	91392	broad.mit.edu	37	chr3	44752247	44752247	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgagtctcctatgctgatGtttttctctttgacagacag	9	8	2	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44752247	T	T	44752247	1	4	51	0	1	0	0	0	0	0	0	0	18077	1392	48	3		3	ZNF502	3	44752247	5'Flank	SNP	G	TCGA-17-Z018-01A-01W-0746-08	132936	44752247	153270183	129	55174											
CCDC36	339834	broad.mit.edu	37	chr3	49294549	49294549	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgcagctcagcaggtgctCttcccaagacaactggctac	9	14	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49294549	A	A	49294549	3	1	51	1	0	0	0	0	1	0	0	0	2835	913	32	3	1645	3	CCDC36	3	49294549	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4542302	49294549	148727881	130	55175											
STAB1	23166	broad.mit.edu	37	chr3	52539056	52539056	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagaccagccccagcagaCgttcaacatctacaaggcca	7	15	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52539056	T	T	52539056	3	4	51	1	0	0	0	0	1	0	0	0	15355	536	19	4	1465	4	STAB1	3	52539056	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3244507	52539056	145483374	131	55176											
ITIH1	3697	broad.mit.edu	37	chr3	52814365	52814365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgaaggaactggcagcCcaaactatcaagaagtcctt	9	12	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52814365	A	A	52814365	2	1	51	1	0	0	0	0	0	0	0	1	7973	610	22	2		2	ITIH1	3	52814365	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	275309	52814365	145208065	132	55177											
TMEM45A	55076	broad.mit.edu	37	chr3	100274262	100274262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggtgagtggaccattctGtgttctatttttacctttta	8	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100274262	T	T	100274262	1	4	51	0	1	0	0	0	0	0	0	0	16292	1392	48	3		3	TMEM45A	3	100274262	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	47459897	100274262	97748168	133	55178											
ZPLD1	131368	broad.mit.edu	37	chr3	102182935	102182935	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaagaagtttctcaAtatttacttcccttgtatta	5	6	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102182935	G	G	102182935	1	3	51	0	1	0	0	0	0	0	0	0	18350	116	4	5		5	ZPLD1	3	102182935	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1908673	102182935	95839495	134	55179											
MYH15	22989	broad.mit.edu	37	chr3	108172929	108172929	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaacaatgtgaagacttTagatagtctctcatctctta	7	7	3	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108172929	C	C	108172929	3	2	51	1	0	0	0	0	1	0	0	0	10128	1763	61	5	3541	5	MYH15	3	108172929	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	5989994	108172929	89849501	135	55180											
IQCB1	9657	broad.mit.edu	37	chr3	121491545	121491545	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagctccctactgaccacatCtgacattggagagccctgga	10	13	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121491545	A	A	121491545	3	1	51	1	0	0	0	0	1	0	0	0	7873	913	32	3	378	3	IQCB1	3	121491545	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	13318616	121491545	76530885	136	55181											
KALRN	8997	broad.mit.edu	37	chr3	124164921	124164921	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaatcacagtcatggtcAcctggcacctgggccgtggg	13	11	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124164921	T	T	124164921	1	4	51	0	1	0	0	0	0	0	0	0	8045	174	6	5		5	KALRN	3	124164921	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2673376	124164921	73857509	137	55182											
UROC1	131669	broad.mit.edu	37	chr3	126222906	126222906	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagccctgcctgtggcgtttCtcaagggctgctttatccac	10	14	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126222906	G	G	126222906	3	3	51	1	0	0	0	0	1	0	0	0	17154	912	32	4	1428	4	UROC1	3	126222906	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2057985	126222906	71799524	138	55183											
ATR	545	broad.mit.edu	37	chr3	142231062	142231063	+	Intron	INS	-	A	A													gagctaattggtgaatagctINSaaaaaaaaaaaaaaaaaaga							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142231063	A	A	142231062	6	5	51	0	1	1	1	0	0	0	0	0	1208	1537	53	0		0	ATR	3	142231062	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	16008156	142231062	55791368	139	55184											
ZIC1	7545	broad.mit.edu	37	chr3	147131357	147131357	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaatcagaaacaaaacatcGaacaaaaccctatttaagag	4	8	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147131357	T	T	147131357	1	4	51	0	1	0	0	0	0	0	0	0	17804	1073	37	3		3	ZIC1	3	147131357	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4900295	147131357	50891073	140	55185											
RSRC1	51319	broad.mit.edu	37	chr3	158015742	158015742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacatatgaaaaaattacaAgggtttataaaacatttttg	5	3	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158015742	T	T	158015742	1	4	51	0	1	0	0	0	0	0	0	0	13825	87	3	5		5	RSRC1	3	158015742	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	10884385	158015742	40006688	141	55186											
LRRIQ4	344657	broad.mit.edu	37	chr3	169540089	169540089	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgcgagctccggctctaccAgaccgacctgaaggaaattc	11	14	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169540089	T	T	169540089	3	4	51	1	0	0	0	0	1	0	0	0	9118	188	7	5	382	5	LRRIQ4	3	169540089	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	11524347	169540089	28482341	142	55187											
LEPREL1	55214	broad.mit.edu	37	chr3	189705288	189705288	+	Intron	DEL	G	-	-													taaaaaaaaaaaaaaaaaaaGaatttcttttcaaaacattg							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	189705288	-	-	189705288	6	5	51	0	1	1	0	1	0	0	0	0	8802	957	33	0		0	LEPREL1	3	189705288	Intron	DEL	G	TCGA-17-Z018-01A-01W-0746-08	20165199	189705288	8317142	143	55188											
WDR53	348793	broad.mit.edu	37	chr3	196288135	196288135	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacactaatggtttctccaTgtgaggcatagagcttggtg	12	7	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196288135	C	C	196288135	3	2	51	1	0	0	0	0	1	0	0	0	17432	1464	51	5	872	5	WDR53	3	196288135	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	6582847	196288135	1734295	144	55189											
ZNF595	152687	broad.mit.edu	37	chr4	65591	65591	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggtactgtctttgccataGtgagtgacttcttctgagat	10	7	3	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65591	C	C	65591	1	2	51	0	1	0	0	0	0	0	0	0	18152	1044	36	4		4	ZNF595	4	65591	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08		65591	191088685	145	55190											
DRD5	1816	broad.mit.edu	37	chr4	9783868	9783868	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcggagccgccacctgcGcgccaacatgaccaacgtct	11	17	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9783868	C	C	9783868	3	2	51	1	0	0	0	0	1	0	0	0	4800	1087	38	4	217	4	DRD5	4	9783868	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	9718277	9783868	181370408	146	55191											
CLNK	116449	broad.mit.edu	37	chr4	10539297	10539297	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttctttctttctttctTtctttcttccttccttcctt	0	13	7	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10539297	C	C	10539297	1	2	51	0	1	0	0	0	0	0	0	0	3579	1856	64	5		5	CLNK	4	10539297	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	755429	10539297	180614979	147	55192											
GBA3	57733	broad.mit.edu	37	chr4	22820551	22820551	+	3'UTR	DEL	G	-	-													tgaagcacatctgtaggcaaGatggctgagaaatacaggag							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22820551	-	-	22820551	6	5	51	0	1	1	0	1	0	0	0	0	6330	957	33	0		0	GBA3	4	22820551	3'UTR	DEL	G	TCGA-17-Z018-01A-01W-0746-08	12281254	22820551	168333725	148	55193											
GABRG1	2565	broad.mit.edu	37	chr4	46125833	46125833	+	Frame_Shift_Del	DEL	C	-	-													ctgaatttactcaccagtttCccaaatgcagggtcagtaac							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46125833	-	-	46125833	7	5	51	1	0	1	0	1	0	0	0	0	6231	855	30	0	1335	0	GABRG1	4	46125833	Frame_Shift_Del	DEL	C	TCGA-17-Z018-01A-01W-0746-08	23305282	46125833	145028443	149	55194											
NFXL1	152518	broad.mit.edu	37	chr4	47881042	47881042	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttgttatttctaacaactCtagtaaagttatactagtat	4	6	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47881042	A	A	47881042	1	1	51	0	1	0	0	0	0	0	0	0	10483	928	32	3		3	NFXL1	4	47881042	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1755209	47881042	143273234	150	55195											
LPHN3	23284	broad.mit.edu	37	chr4	62598867	62598867	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggaggcaaatctgacataGacctggcagtagatgagaat	14	6	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62598867	T	T	62598867	3	4	51	1	0	0	0	0	1	0	0	0	9004	942	33	3	808	3	LPHN3	4	62598867	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	14717825	62598867	128555409	151	55196											
AFP	174	broad.mit.edu	37	chr4	74308042	74308042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagatagcaagaaggcatcCcttcctgtatgcacctacaa	8	11	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74308042	A	A	74308042	3	1	51	1	0	0	0	0	1	0	0	0	363	623	22	2	530	2	AFP	4	74308042	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	11709175	74308042	116846234	152	55197											
TMEM150C	441027	broad.mit.edu	37	chr4	83415936	83415937	+	Intron	INS	-	T	T													ttaggaaccaatgttcctaaINStttttttttttttttttttt					rs147227674		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83415937	T	T	83415936	6	5	51	0	1	1	1	0	0	0	0	0	16192	116	4	0		0	TMEM150C	4	83415936	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	9107894	83415936	107738340	153	55198											
SCD5	79966	broad.mit.edu	37	chr4	83601843	83601843	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgagggacagctctccgtCatgcccattcacttactttc	7	15	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83601843	A	A	83601843	1	1	51	0	1	0	0	0	0	0	0	0	13999	841	29	3		3	SCD5	4	83601843	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	185907	83601843	107552433	154	55199											
NKX6-1	4825	broad.mit.edu	37	chr4	85416877	85416877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccaaacgagccctctcgGgccccgccaagtattttgtt	10	14	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85416877	T	T	85416877	3	4	51	1	0	0	0	0	1	0	0	0	10552	1232	43	2	320	2	NKX6-1	4	85416877	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1815034	85416877	105737399	155	55200											
BMPR1B	658	broad.mit.edu	37	chr4	95881249	95881249	+	Intron	DEL	T	-	-													atccgggatgcttttgtctcTttttaccaatatgaaggtcc					rs11326735		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95881249	-	-	95881249	6	5	51	0	1	1	0	1	0	0	0	0	1476	1624	56	0		0	BMPR1B	4	95881249	Intron	DEL	T	TCGA-17-Z018-01A-01W-0746-08	10464372	95881249	95273027	156	55201											
HADH	3033	broad.mit.edu	37	chr4	108942953	108942953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggattctgtttgatttGtggtacccgcagggtggctt	14	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108942953	T	T	108942953	1	4	51	0	1	0	0	0	0	0	0	0	7008	1392	48	3		3	HADH	4	108942953	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	13061704	108942953	82211323	157	55202											
TRPC3	7222	broad.mit.edu	37	chr4	122853870	122853870	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgtagcccttgctgatggcGagcagcagggcgtcgccaat	14	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122853870	T	T	122853870	2	4	51	1	0	0	0	0	0	0	0	1	16704	1045	37	3		3	TRPC3	4	122853870	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	13910917	122853870	68300406	158	55203											
FBXW7	55294	broad.mit.edu	37	chr4	153247364	153247364	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaaccctaagagtggcatCtcgagaaccgctaacaactc	7	14	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153247364	A	A	153247364	3	1	51	1	0	0	0	0	1	0	0	0	5826	913	32	3	697	3	FBXW7	4	153247364	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	30393494	153247364	37906912	159	55204											
TMEM154	201799	broad.mit.edu	37	chr4	153549745	153549745	+	Intron	DEL	C	-	-													aaaaaaaaaaaaaaaaaaaaCaaaaaaaacacacacacaca					rs72117571		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153549745	-	-	153549745	6	5	51	0	1	1	0	1	0	0	0	0	16194	493	17	0		0	TMEM154	4	153549745	Intron	DEL	C	TCGA-17-Z018-01A-01W-0746-08	302381	153549745	37604531	160	55205											
TMEM144	55314	broad.mit.edu	37	chr4	159174723	159174723	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtagttaagagaacgcGtctatcggacagcggagaga	14	7	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159174723	T	T	159174723	1	4	51	0	1	0	0	0	0	0	0	0	16181	1160	40	3		3	TMEM144	4	159174723	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5624978	159174723	31979553	161	55206											
MARCH1	55016	broad.mit.edu	37	chr4	165110849	165110849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgattccaaggaacacaGtggtacctaccaagaagtcc	8	11	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165110849	T	T	165110849	1	4	51	0	1	0	0	0	0	0	0	0	9390	1044	36	3		3	MARCH1	4	165110849	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5936126	165110849	26043427	162	55207											
GALNTL6	442117	broad.mit.edu	37	chr4	173232986	173232986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaaatgtgtatcactgCgagatatgtaaccaaatatt	6	5	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173232986	A	A	173232986	1	1	51	0	1	0	0	0	0	0	0	0	6287	783	27	3		3	GALNTL6	4	173232986	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	8122137	173232986	17921290	163	55208											
C4orf41	60684	broad.mit.edu	37	chr4	184605296	184605296	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacactctactttttctaatAggagataatcataactcttc	3	10	4	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184605296	T	T	184605296	5	4	51	1	0	0	0	0	0	0	1	0	2293	434	15	5	1332	5	C4orf41	4	184605296	Splice_Site	SNP	A	TCGA-17-Z018-01A-01W-0746-08	11372310	184605296	6548980	164	55209											
ENPP6	133121	broad.mit.edu	37	chr4	185096296	185096296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccaccttgtgtcctcaCtccctcacctccaggtccat	5	20	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185096296	A	A	185096296	1	1	51	0	1	0	0	0	0	0	0	0	5176	580	20	3		3	ENPP6	4	185096296	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	491000	185096296	6057980	165	55210											
TRIO	7204	broad.mit.edu	37	chr5	14482690	14482690	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctttatttcttgttttaGgggaaaatcgttgcccaggg	10	9	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14482690	T	T	14482690	5	4	51	1	0	0	0	0	0	0	1	0	16677	1014	35	2	6647	2	TRIO	5	14482690	Splice_Site	SNP	G	TCGA-17-Z018-01A-01W-0746-08		14482690	166432570	166	55211											
FBXL7	23194	broad.mit.edu	37	chr5	15928552	15928552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgttacaatatctccaaCgaggccgtctttgatgtggt	11	9	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928552	A	A	15928552	3	1	51	1	0	0	0	0	1	0	0	0	5781	535	19	3	691	3	FBXL7	5	15928552	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1445862	15928552	164986708	167	55212											
CDH12	1010	broad.mit.edu	37	chr5	21883732	21883732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcatgacttaggaaaaGttggagaggtcattgtgacc	12	7	2	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21883732	T	T	21883732	1	4	51	0	1	0	0	0	0	0	0	0	3128	1044	36	3		3	CDH12	5	21883732	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5955180	21883732	159031528	168	55213											
CDH10	1008	broad.mit.edu	37	chr5	24537780	24537780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttatcttggtctgaatGtagctaggggaaataaaaaa	9	5	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24537780	T	T	24537780	3	4	51	1	0	0	0	0	1	0	0	0	3126	1377	48	3	2171	3	CDH10	5	24537780	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2654048	24537780	156377480	169	55214											
ADAMTS12	81792	broad.mit.edu	37	chr5	33596042	33596042	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttagcgatggttacctgGgtggacaagccttttcatgg	13	8	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33596042	A	A	33596042	3	1	51	1	0	0	0	0	1	0	0	0	257	1232	43	4	2165	4	ADAMTS12	5	33596042	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	9058262	33596042	147319218	170	55215											
SPEF2	79925	broad.mit.edu	37	chr5	35641547	35641547	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccagggtttcaagtgccaAacttaataatttttctcgct	7	9	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35641547	T	T	35641547	3	4	51	1	0	0	0	0	1	0	0	0	15153	14	1	5	186	5	SPEF2	5	35641547	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2045505	35641547	145273713	171	55216											
UGT3A1	133688	broad.mit.edu	37	chr5	35954265	35954265	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggagaaccttcaaaggaCcagggatgccctcccctcac	11	14	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35954265	A	A	35954265	1	1	51	0	1	0	0	0	0	0	0	0	17089	522	18	3		3	UGT3A1	5	35954265	3'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	312718	35954265	144960995	172	55217											
ERCC8	1161	broad.mit.edu	37	chr5	60186677	60186677	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atataactggtctggcaagcTagctagctgaacattttaaa	8	7	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60186677	C	C	60186677	1	2	51	0	1	0	0	0	0	0	0	0	5261	1537	53	5		5	ERCC8	5	60186677	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	24232412	60186677	120728583	173	55218											
CCNB1	891	broad.mit.edu	37	chr5	68470998	68470998	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagggggaacactgctgctGaccaagcacgttgaattcaa	11	9	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68470998	T	T	68470998	1	4	51	0	1	0	0	0	0	0	0	0	2941	1305	45	3		3	CCNB1	5	68470998	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	8284321	68470998	112444262	174	55219											
COL4A3BP	10087	broad.mit.edu	37	chr5	74670576	74670576	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagaaggatcgaacacCtccaccccaatttagacctg	9	12	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74670576	T	T	74670576	1	4	51	0	1	0	0	0	0	0	0	0	3724	696	24	4		4	COL4A3BP	5	74670576	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	6199578	74670576	106244684	175	55220											
WDR41	55255	broad.mit.edu	37	chr5	76776240	76776240	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcacaatagcaaggacttgGaaccaacccaaatgtccaac	6	12	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76776240	C	C	76776240	1	2	51	0	1	0	0	0	0	0	0	0	17421	1189	41	4		4	WDR41	5	76776240	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2105664	76776240	104139020	176	55221											
SERINC5	256987	broad.mit.edu	37	chr5	79527443	79527443	+	Intron	DEL	A	-	-													ttccaacgtacagtcaaattAaaaaaaaaaaaaatcaatag							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79527443	-	-	79527443	6	5	51	0	1	1	0	1	0	0	0	0	14196	377	13	0		0	SERINC5	5	79527443	Intron	DEL	A	TCGA-17-Z018-01A-01W-0746-08	2751203	79527443	101387817	177	55222											
VCAN	1462	broad.mit.edu	37	chr5	82779263	82779263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacatacaatgcacaaaaaGcatgtgatttatgacccact	5	9	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82779263	T	T	82779263	1	4	51	0	1	0	0	0	0	0	0	0	17265	986	34	3		3	VCAN	5	82779263	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3251820	82779263	98135997	178	55223											
C5orf36	285600	broad.mit.edu	37	chr5	93489584	93489584	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtattccttttcagtaCagagattactcagtcattgg	8	8	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93489584	A	A	93489584	1	1	51	0	1	0	0	0	0	0	0	0	2318	493	17	3		3	C5orf36	5	93489584	3'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	10710321	93489584	87425676	179	55224											
EPB41L4A	64097	broad.mit.edu	37	chr5	111642524	111642527	+	Intron	DEL	AATT	-	-													ccggactggaagaccctctgAattaacctttgtgaacaact					rs137882537		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111642527	-	-	111642524	6	5	51	0	1	1	0	1	0	0	0	0	5197	261	9	0		0	EPB41L4A	5	111642524	Intron	DEL	AATT	TCGA-17-Z018-01A-01W-0746-08	18152940	111642524	69272736	180	55225											
APC	324	broad.mit.edu	37	chr5	112154531	112154531	+	Intron	DEL	G	-	-													gaaaggttttccggttttttGttttttttttggcggggggg					rs146946846		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112154531	-	-	112154531	6	5	51	0	1	1	0	1	0	0	0	0	765	1392	48	0		0	APC	5	112154531	Intron	DEL	G	TCGA-17-Z018-01A-01W-0746-08	512007	112154531	68760729	181	55226											
ATG12	9140	broad.mit.edu	37	chr5	115168268	115168268	+	Intron	DEL	C	-	-													aaaaaagcagtaatttctttCtttttttttttttttttttt					rs68015035		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115168268	-	-	115168268	6	5	51	0	1	1	0	1	0	0	0	0	1094	928	32	0		0	ATG12	5	115168268	Intron	DEL	C	TCGA-17-Z018-01A-01W-0746-08	3013737	115168268	65746992	182	55227											
CEP120	153241	broad.mit.edu	37	chr5	122685675	122685675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatccaacaattcttgtcGctcggtttttactgtatctt	5	9	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122685675	T	T	122685675	2	4	51	1	0	0	0	0	0	0	0	1	3276	1095	38	3		3	CEP120	5	122685675	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	7517407	122685675	58229585	183	55228											
MEGF10	84466	broad.mit.edu	37	chr5	126778734	126778734	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggctgtcgccagatatgtGattgtctgaacaactccacc	9	11	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126778734	C	C	126778734	3	2	51	1	0	0	0	0	1	0	0	0	9553	1290	45	4	2477	4	MEGF10	5	126778734	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4093059	126778734	54136526	184	55229											
FBN2	2201	broad.mit.edu	37	chr5	127681174	127681174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactcggtgccccaagccGccccgacagcacagcagcag	10	19	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127681174	T	T	127681174	3	4	51	1	0	0	0	0	1	0	0	0	5760	1087	38	3	5814	3	FBN2	5	127681174	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	902440	127681174	53234086	185	55230											
CDKL3	51265	broad.mit.edu	37	chr5	133642367	133642367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatagattgtgaagaagtgCgtctcttttttgctctttca	8	7	3	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133642367	A	A	133642367	3	1	51	1	0	0	0	0	1	0	0	0	3185	768	27	3	403	3	CDKL3	5	133642367	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5961193	133642367	47272893	186	55231											
KLHL3	26249	broad.mit.edu	37	chr5	137045461	137045461	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaacatcgcacagaagtaGgggctgcaggctgccaggac	15	10	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137045461	A	A	137045461	2	1	51	1	0	0	0	0	0	0	0	1	8454	987	35	4		4	KLHL3	5	137045461	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3403094	137045461	43869799	187	55232											
WNT8A	7478	broad.mit.edu	37	chr5	137423338	137423339	+	Intron	INS	-	AA	AA													ctggtgacagagcgagtctcINSaaaaaaaaaaaaaaaaaaaa					rs66902804		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	137423339	AA	AA	137423338	6	5	51	0	1	1	1	0	0	0	0	0	17523	841	29	0		0	WNT8A	5	137423338	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	377877	137423338	43491922	188	55233											
NRG2	9542	broad.mit.edu	37	chr5	139232788	139232788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgaatccaataggacCtgagcgtcgtggcagtgagc	12	12	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139232788	A	A	139232788	1	1	51	0	1	0	0	0	0	0	0	0	10743	696	24	2		2	NRG2	5	139232788	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1809450	139232788	41682472	189	55234											
PCDHA1	56147	broad.mit.edu	37	chr5	140189255	140189255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaatttccctgggttaaAattttacctctttttacata	4	8	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140189255	T	T	140189255	1	4	51	0	1	0	0	0	0	0	0	0	11613	29	1	5		5	PCDHA1	5	140189255	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	956467	140189255	40726005	190	55235											
PCDHB12	56124	broad.mit.edu	37	chr5	140588872	140588872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatataaatgatcactctccCgtcttcttggaaaaagaaat	6	8	4	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140588872	A	A	140588872	2	1	51	1	0	0	0	0	0	0	0	1	11631	639	23	1		1	PCDHB12	5	140588872	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	399617	140588872	40326388	191	55236											
PCDHGB3	56102	broad.mit.edu	37	chr5	140751895	140751895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccagcgcctgctggtcaCtgtgcgtgatggaggacagc	15	13	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140751895	A	A	140751895	3	1	51	1	0	0	0	0	1	0	0	0	11658	565	20	3	1936	3	PCDHGB3	5	140751895	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	163023	140751895	40163365	192	55237											
TCERG1	10915	broad.mit.edu	37	chr5	145887540	145887540	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaagaggattttgtgtcgaGatttactgtcagtctataaa	10	4	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145887540	T	T	145887540	1	4	51	0	1	0	0	0	0	0	0	0	15807	957	33	3		3	TCERG1	5	145887540	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5135645	145887540	35027720	193	55238											
ADRB2	154	broad.mit.edu	37	chr5	148206398	148206398	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccagactgcgcgccatgGggcaacccgggaacggcagc	15	15	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148206398	A	A	148206398	3	1	51	1	0	0	0	0	1	0	0	0	341	1232	43	4	6	4	ADRB2	5	148206398	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2318858	148206398	32708862	194	55239											
NMUR2	56923	broad.mit.edu	37	chr5	151775020	151775020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatccagctaaggttttacCtgacaccacatggacgaggt	9	10	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151775020	A	A	151775020	3	1	51	1	0	0	0	0	1	0	0	0	10602	695	24	2	318	2	NMUR2	5	151775020	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3568622	151775020	29140240	195	55240											
GRIA1	2890	broad.mit.edu	37	chr5	153157751	153157760	+	Intron	DEL	GAGTGTGTGT	-	-													gagacagagagagagagagaGagtgtgtgtgtgtgtgtgtg					rs72394542		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153157760	-	-	153157751	6	5	51	0	1	1	0	1	0	0	0	0	6833	957	33	0		0	GRIA1	5	153157751	Intron	DEL	GAGTGTGTGT	TCGA-17-Z018-01A-01W-0746-08	1382731	153157751	27757509	196	55241											
HAVCR1	26762	broad.mit.edu	37	chr5	156459917	156459917	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctaaattgaaggggtgggGagagaggagttgaagagaaa	17	2	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156459917	A	A	156459917	1	1	51	0	1	0	0	0	0	0	0	0	7039	1189	41	4		4	HAVCR1	5	156459917	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3302166	156459917	24455343	197	55242											
ODZ2	57451	broad.mit.edu	37	chr5	167646179	167646179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgactctgaaatgatttGctctaatggatctctgatat	7	9	3	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167646179	T	T	167646179	1	4	51	0	1	0	0	0	0	0	0	0	10930	1334	46	3		3	ODZ2	5	167646179	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	11186262	167646179	13269081	198	55243											
DOCK2	1794	broad.mit.edu	37	chr5	169126491	169126491	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatatgccagtgggctgaGcctgctccagcttgggagcc	13	13	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169126491	A	A	169126491	1	1	51	0	1	0	0	0	0	0	0	0	4727	986	34	4		4	DOCK2	5	169126491	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1480312	169126491	11788769	199	55244											
DUSP22	56940	broad.mit.edu	37	chr6	325805	325805	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgcagtgctgtatctgcTggtgcctggagagtcatctg	15	8	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	325805	G	G	325805	1	3	51	0	1	0	0	0	0	0	0	0	4861	1595	55	5		5	DUSP22	6	325805	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08		325805	170789262	200	55245											
SERPINB9	5272	broad.mit.edu	37	chr6	2895786	2895786	+	Intron	DEL	A	-	-													gaggctgcattgctaaatacAaatgtcagcaaacttccaaa							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2895786	-	-	2895786	6	5	51	0	1	1	0	1	0	0	0	0	14221	145	5	0		0	SERPINB9	6	2895786	Intron	DEL	A	TCGA-17-Z018-01A-01W-0746-08	2569981	2895786	168219281	201	55246											
GMPR	2766	broad.mit.edu	37	chr6	16254989	16254989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacggtagaacattacgGtagaacattctcaagatggg	11	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16254989	T	T	16254989	1	4	51	0	1	0	0	0	0	0	0	0	6560	1276	44	3		3	GMPR	6	16254989	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	13359203	16254989	154860078	202	55247											
OR11A1	26531	broad.mit.edu	37	chr6	29394424	29394424	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccatcctggaagagtccCcagtggaggtgtccgaagtc	12	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29394424	A	A	29394424	1	1	51	0	1	0	0	0	0	0	0	0	11018	638	22	2		2	OR11A1	6	29394424	3'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	13139435	29394424	141720643	203	55248											
DHX16	8449	broad.mit.edu	37	chr6	30633124	30633124	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcccctcttcccattacTacccccgcccactgcccatt	2	23	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30633124	G	G	30633124	1	3	51	0	1	0	0	0	0	0	0	0	4542	1537	53	5		5	DHX16	6	30633124	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1238700	30633124	140481943	204	55249											
PPT2	9374	broad.mit.edu	37	chr6	32122496	32122496	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacaagccggtcatcgtggTgcatgggctcttcgacagct	12	12	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32122496	A	A	32122496	3	1	51	1	0	0	0	0	1	0	0	0	12513	1696	59	5	149	5	PPT2	6	32122496	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1489372	32122496	138992571	205	55250											
LHFPL5	222662	broad.mit.edu	37	chr6	35787141	35787141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgatgtagtttggagatGgagtagtgtgcaggaaatta	14	2	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35787141	T	T	35787141	1	4	51	0	1	0	0	0	0	0	0	0	8840	1363	47	2		2	LHFPL5	6	35787141	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3664645	35787141	135327926	206	55251											
TTBK1	84630	broad.mit.edu	37	chr6	43212003	43212003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacctgttcccatcacccCtcgctagtctccatcacctc	3	20	4	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43212003	A	A	43212003	1	1	51	0	1	0	0	0	0	0	0	0	16802	696	24	2		2	TTBK1	6	43212003	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	7424862	43212003	127903064	207	55252											
SUPT3H	8464	broad.mit.edu	37	chr6	44988218	44988218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacataacaaggatatatagTttccacatgcaagttcaatt	5	7	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44988218	C	C	44988218	1	2	51	0	1	0	0	0	0	0	0	0	15515	1740	60	5		5	SUPT3H	6	44988218	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1776215	44988218	126126849	208	55253											
OPN5	221391	broad.mit.edu	37	chr6	47775891	47775891	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctttccctcatcaggTagcgatgttgatttgtgctg	11	8	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47775891	A	A	47775891	3	1	51	1	0	0	0	0	1	0	0	0	10977	1652	57	5	776	5	OPN5	6	47775891	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	2787673	47775891	123339176	209	55254											
PKHD1	5314	broad.mit.edu	37	chr6	51798748	51798748	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtagtgtactctgccacatGaatcgtaacagttttacttg	9	8	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51798748	T	T	51798748	1	4	51	0	1	0	0	0	0	0	0	0	12066	1305	45	3		3	PKHD1	6	51798748	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4022857	51798748	119316319	210	55255											
PRIM2	5558	broad.mit.edu	37	chr6	57262516	57262516	+	Intron	DEL	A	-	-													ttgctggtgaactagtttgcAaaaaaaatcaactcctgggt					rs75873741		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57262516	-	-	57262516	6	5	51	0	1	1	0	1	0	0	0	0	12597	145	5	0		0	PRIM2	6	57262516	Intron	DEL	A	TCGA-17-Z018-01A-01W-0746-08	5463768	57262516	113852551	211	55256											
PRIM2	5558	broad.mit.edu	37	chr6	57328907	57328907	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctctcagttagctaactcCtactcactctccaggtcttc	4	16	5	0	rs113000665		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57328907	G	G	57328907	1	3	51	0	1	0	0	0	0	0	0	0	12597	696	24	4		4	PRIM2	6	57328907	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	66391	57328907	113786160	212	55257											
PRIM2	5558	broad.mit.edu	37	chr6	57398118	57398119	+	Intron	INS	-	T	T													cttaacttaaaactctactgINSttttttcttgtagctttcta					rs147643173		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398119	T	T	57398118	6	5	51	0	1	1	1	0	0	0	0	0	12597	1392	48	0		0	PRIM2	6	57398118	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	69211	57398118	113716949	213	55258											
PRIM2	5558	broad.mit.edu	37	chr6	57499090	57499090	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttttgttactgtgtcaCattcagggtttttagttgca	9	6	3	0	rs113814058		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57499090	T	T	57499090	1	4	51	0	1	0	0	0	0	0	0	0	12597	493	17	4		4	PRIM2	6	57499090	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	100972	57499090	113615977	214	55259											
COL19A1	1310	broad.mit.edu	37	chr6	70637869	70637869	+	Frame_Shift_Del	DEL	C	-	-													gtttcgagtacgaagaaacgCcaaaaaggaacggtggtttc							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70637869	-	-	70637869	7	5	51	1	0	1	0	1	0	0	0	0	3708	739	26	0	349	0	COL19A1	6	70637869	Frame_Shift_Del	DEL	C	TCGA-17-Z018-01A-01W-0746-08	13138779	70637869	100477198	215	55260											
CD109	135228	broad.mit.edu	37	chr6	74491052	74491052	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtgtttgtaagtaatAcatggcgacatgcttgtatt	11	4	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74491052	G	G	74491052	1	3	51	0	1	0	0	0	0	0	0	0	2993	406	14	5		5	CD109	6	74491052	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	3853183	74491052	96624015	216	55261											
MYO6	4646	broad.mit.edu	37	chr6	76545530	76545530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttataatgatgatctaGgtttcagttttatatgtact	7	3	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76545530	T	T	76545530	1	4	51	0	1	0	0	0	0	0	0	0	10175	1015	35	2		2	MYO6	6	76545530	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2054478	76545530	94569537	217	55262											
TTK	7272	broad.mit.edu	37	chr6	80749390	80749390	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaataacagcaacttttttGtgtttgtttgtttttttctt	5	4	1	0	rs3799493	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80749390	C	C	80749390	1	2	51	0	1	0	0	0	0	0	0	0	16846	1392	48	4		4	TTK	6	80749390	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4203860	80749390	90365677	218	55263											
ZNF292	23036	broad.mit.edu	37	chr6	87914900	87914900	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgggctcgagcgatcctCcagctttagcctcccaagta	9	15	0	0	rs116689979	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87914900	T	T	87914900	1	4	51	0	1	0	0	0	0	0	0	0	17952	870	30	4		4	ZNF292	6	87914900	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	7165510	87914900	83200167	219	55264											
ZNF292	23036	broad.mit.edu	37	chr6	87925825	87925848	+	Intron	DEL	AGACACACACACACACACACACAC	-	-													atttagctttaaaaatacatAgacacacacacacacacaca					rs71960404		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87925848	-	-	87925825	6	5	51	0	1	1	0	1	0	0	0	0	17952	435	15	0		0	ZNF292	6	87925825	Intron	DEL	AGACACACACACACACACACACAC	TCGA-17-Z018-01A-01W-0746-08	10925	87925825	83189242	220	55265											
FIG4	9896	broad.mit.edu	37	chr6	110037827	110037827	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtttttgtcttctctAcatagactacttaaaggagt	6	6	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110037827	G	G	110037827	1	3	51	0	1	0	0	0	0	0	0	0	5945	406	14	5		5	FIG4	6	110037827	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	22112002	110037827	61077240	221	55266											
WASF1	8936	broad.mit.edu	37	chr6	110421772	110421772	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgaatcatcttccgaatCactatattcaacagcaatac	3	11	5	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110421772	G	G	110421772	3	3	51	1	0	0	0	0	1	0	0	0	17379	826	29	4	50	4	WASF1	6	110421772	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	383945	110421772	60693295	222	55267											
RFX6	222546	broad.mit.edu	37	chr6	117240356	117240356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaacagtgggttgtttcatCcttggaaaacttgccagaag	12	7	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117240356	A	A	117240356	3	1	51	1	0	0	0	0	1	0	0	0	13375	855	30	3	1121	3	RFX6	6	117240356	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	6818584	117240356	53874711	223	55268											
NKAIN2	154215	broad.mit.edu	37	chr6	124979589	124979589	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggggttgttttatttctgTgcgaactcagtgcacacaaa	10	8	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124979589	A	A	124979589	1	1	51	0	1	0	0	0	0	0	0	0	10531	1711	59	5		5	NKAIN2	6	124979589	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	7739233	124979589	46135478	224	55269											
LAMA2	3908	broad.mit.edu	37	chr6	129674499	129674499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgcgagggctgggagtgtGtttgtacgtatactaacttt	13	7	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129674499	T	T	129674499	3	4	51	1	0	0	0	0	1	0	0	0	8678	1377	48	3	4840	3	LAMA2	6	129674499	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4694910	129674499	41440568	225	55270											
NMBR	4829	broad.mit.edu	37	chr6	142397240	142397240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaaaatggaaccagccaCataccaactttatcaagtca	6	10	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142397240	A	A	142397240	1	1	51	0	1	0	0	0	0	0	0	0	10582	493	17	3		3	NMBR	6	142397240	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	12722741	142397240	28717827	226	55271											
UTRN	7402	broad.mit.edu	37	chr6	144875803	144875803	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acatgttgggatttttttttCttttataatgctaccctcag	6	7	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144875803	G	G	144875803	1	3	51	0	1	0	0	0	0	0	0	0	17230	928	32	4		4	UTRN	6	144875803	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2478563	144875803	26239264	227	55272											
SASH1	23328	broad.mit.edu	37	chr6	148795398	148795398	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttatatttgtgaggacttGactttctgaagtgtaaaaat	9	3	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148795398	T	T	148795398	1	4	51	0	1	0	0	0	0	0	0	0	13960	1305	45	3		3	SASH1	6	148795398	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3919595	148795398	22319669	228	55273											
FNDC1	84624	broad.mit.edu	37	chr6	159650819	159650819	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactgttttcagtttcctcCttccaaccatctgccaaatc	5	14	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159650819	T	T	159650819	1	4	51	0	1	0	0	0	0	0	0	0	6026	696	24	4		4	FNDC1	6	159650819	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	10855421	159650819	11464248	229	55274											
WDR27	253769	broad.mit.edu	37	chr6	170070699	170070699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatattttgtttccagcaCacacggcaacaacatgatca	6	10	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170070699	A	A	170070699	3	1	51	1	0	0	0	0	1	0	0	0	17411	478	17	3	2239	3	WDR27	6	170070699	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	10419880	170070699	1044368	230	55275											
CARD11	84433	broad.mit.edu	37	chr7	2998224	2998224	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctggatcttgtcgtcccttGagccaggctcccgttgcatc	11	14	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2998224	T	T	2998224	1	4	51	0	1	0	0	0	0	0	0	0	2671	1305	45	3		3	CARD11	7	2998224	5'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08		2998224	156140439	231	55276											
MMD2	221938	broad.mit.edu	37	chr7	4949570	4949570	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacgtagcagagaagctccAcaagcttgtacctggcagga	12	11	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4949570	T	T	4949570	3	4	51	1	0	0	0	0	1	0	0	0	9737	159	6	5	269	5	MMD2	7	4949570	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1951346	4949570	154189093	232	55277											
TNRC18	84629	broad.mit.edu	37	chr7	5359833	5359833	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggccatacagttttcagTtatgtgagcccacaagtctt	9	9	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5359833	C	C	5359833	1	2	51	0	1	0	0	0	0	0	0	0	16462	1740	60	5		5	TNRC18	7	5359833	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	410263	5359833	153778830	233	55278											
TNRC18	84629	broad.mit.edu	37	chr7	5359984	5359984	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtagagacagcggtacTgctggctccagtaggctgca	15	10	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5359984	C	C	5359984	3	2	51	1	0	0	0	0	1	0	0	0	16462	1580	55	5	2224	5	TNRC18	7	5359984	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	151	5359984	153778679	234	55279											
THSD7A	221981	broad.mit.edu	37	chr7	11418911	11418911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatggcatgtttttgtctgCaggagaacaagaagatttat	10	5	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11418911	A	A	11418911	1	1	51	0	1	0	0	0	0	0	0	0	16002	725	25	3		3	THSD7A	7	11418911	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	6058927	11418911	147719752	235	55280											
HDAC9	9734	broad.mit.edu	37	chr7	18688152	18688152	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaatttcacctggcattaGaggtacccacaaattgcccc	8	12	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18688152	T	T	18688152	3	4	51	1	0	0	0	0	1	0	0	0	7081	942	33	3	1351	3	HDAC9	7	18688152	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	7269241	18688152	140450511	236	55281											
HDAC9	9734	broad.mit.edu	37	chr7	18801912	18801912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcctaggtctgtacgggCctccactgtactgggaacag	11	12	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18801912	A	A	18801912	1	1	51	0	1	0	0	0	0	0	0	0	7081	754	26	3		3	HDAC9	7	18801912	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	113760	18801912	140336751	237	55282											
DNAH11	8701	broad.mit.edu	37	chr7	21655913	21655913	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcagaaggtttgccaaggcGagttccataactgtctatta	9	9	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21655913	A	A	21655913	2	1	51	1	0	0	0	0	0	0	0	1	4639	1045	37	4		4	DNAH11	7	21655913	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2854001	21655913	137482750	238	55283											
NFE2L3	9603	broad.mit.edu	37	chr7	26223439	26223439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttttatcctcgcaggaaCatatctgcactgaccttttg	8	11	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26223439	A	A	26223439	1	1	51	0	1	0	0	0	0	0	0	0	10464	493	17	3		3	NFE2L3	7	26223439	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4567526	26223439	132915224	239	55284											
BMPER	168667	broad.mit.edu	37	chr7	34079868	34079868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgaagaagcattaatgGggacaggaggccaagggaaa	16	5	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34079868	T	T	34079868	1	4	51	0	1	0	0	0	0	0	0	0	1474	1247	43	2		2	BMPER	7	34079868	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	7856429	34079868	125058795	240	55285											
ELMO1	9844	broad.mit.edu	37	chr7	37299162	37299162	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtctgctcatgtcacaacagGaagcagttgcattcttctca	8	11	5	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37299162	A	A	37299162	1	1	51	0	1	0	0	0	0	0	0	0	5107	1189	41	4		4	ELMO1	7	37299162	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3219294	37299162	121839501	241	55286											
AMPH	273	broad.mit.edu	37	chr7	38471802	38471802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttaccgtccataggtccCagggcaatgtctgaaagcaa	11	11	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38471802	A	A	38471802	3	1	51	1	0	0	0	0	1	0	0	0	588	595	21	2	978	2	AMPH	7	38471802	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1172640	38471802	120666861	242	55287											
SUN3	256979	broad.mit.edu	37	chr7	48045513	48045513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagagaatagggacattcCtgaagcattctttttttttt	8	5	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48045513	A	A	48045513	1	1	51	0	1	0	0	0	0	0	0	0	15511	696	24	2		2	SUN3	7	48045513	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9573711	48045513	111093150	243	55288											
ABCA13	154664	broad.mit.edu	37	chr7	48396088	48396088	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctgtgtcctgaattagtCaaggggaagagacctcaaca	11	9	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48396088	A	A	48396088	1	1	51	0	1	0	0	0	0	0	0	0	31	841	29	3		3	ABCA13	7	48396088	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	350575	48396088	110742575	244	55289											
COBL	23242	broad.mit.edu	37	chr7	51095389	51095389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgtggaaggcctgccCcggaagccgccatcctcacc	13	16	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51095389	A	A	51095389	1	1	51	0	1	0	0	0	0	0	0	0	3685	638	22	2		2	COBL	7	51095389	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2699301	51095389	108043274	245	55290											
AUTS2	26053	broad.mit.edu	37	chr7	70227696	70227696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccccatttgctgtgggcGcatacccccgcaggtggtgg	14	13	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70227696	T	T	70227696	1	4	51	0	1	0	0	0	0	0	0	0	1230	1102	38	3		3	AUTS2	7	70227696	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	19132307	70227696	88910967	246	55291											
BAZ1B	9031	broad.mit.edu	37	chr7	72856981	72856981	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagggcttggctgagagccCctcaggggctctggaagctt	15	11	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72856981	A	A	72856981	1	1	51	0	1	0	0	0	0	0	0	0	1335	638	22	2		2	BAZ1B	7	72856981	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2629285	72856981	86281682	247	55292											
TBL2	26608	broad.mit.edu	37	chr7	72985127	72985127	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtagagatgaatactacTgccactggccaaggccaaga	10	9	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72985127	C	C	72985127	3	2	51	1	0	0	0	0	1	0	0	0	15764	1580	55	5	293	5	TBL2	7	72985127	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	128146	72985127	86153536	248	55293											
YWHAG	7532	broad.mit.edu	37	chr7	75959117	75959117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtagttaagagccaggCctaatcggatggggtgggtg	18	6	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75959117	A	A	75959117	3	1	51	1	0	0	0	0	1	0	0	0	17630	739	26	3	226	3	YWHAG	7	75959117	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2973990	75959117	83179546	249	55294											
YWHAG	7532	broad.mit.edu	37	chr7	75991303	75991303	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcactgccaagactaagtgGttagatggccagcatggagg	14	8	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75991303	T	T	75991303	1	4	51	0	1	0	0	0	0	0	0	0	17630	1276	44	3		3	YWHAG	7	75991303	5'Flank	SNP	G	TCGA-17-Z018-01A-01W-0746-08	32186	75991303	83147360	250	55295											
MAGI2	9863	broad.mit.edu	37	chr7	78937696	78937697	+	Intron	INS	-	G	G													tgtatagcttctcttggagtINStttcccaggacagtgccctc					rs141479541	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78937697	G	G	78937696	6	5	51	0	1	1	1	0	0	0	0	0	9283	1740	60	0		0	MAGI2	7	78937696	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	2946393	78937696	80200967	251	55296											
CACNA2D1	781	broad.mit.edu	37	chr7	81695888	81695888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatcaaaatattagatatGctctaaaaataatgagactt	4	4	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81695888	T	T	81695888	1	4	51	0	1	0	0	0	0	0	0	0	2574	1334	46	3		3	CACNA2D1	7	81695888	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2758192	81695888	77442775	252	55297											
SEMA3A	10371	broad.mit.edu	37	chr7	83636642	83636642	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcagaaatatattcatttCatattttaaacacctaagct	4	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83636642	T	T	83636642	1	4	51	0	1	0	0	0	0	0	0	0	14137	841	29	4		4	SEMA3A	7	83636642	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1940754	83636642	75502021	253	55298											
CALCR	799	broad.mit.edu	37	chr7	93101848	93101848	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatatctcaaaatcccaaCaaggaaaaataataaattaa	2	6	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93101848	A	A	93101848	1	1	51	0	1	0	0	0	0	0	0	0	2605	493	17	3		3	CALCR	7	93101848	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9465206	93101848	66036815	254	55299											
SLC26A5	375611	broad.mit.edu	37	chr7	103029979	103029979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgccttctccctactcaCttcctatatggcaccgatgg	6	16	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103029979	A	A	103029979	1	1	51	0	1	0	0	0	0	0	0	0	14634	580	20	3		3	SLC26A5	7	103029979	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9928131	103029979	56108684	255	55300											
RELN	5649	broad.mit.edu	37	chr7	103123972	103123972	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatctgggttagtcttcgttCtgccaccacctagttttgtg	10	10	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103123972	A	A	103123972	1	1	51	0	1	0	0	0	0	0	0	0	13328	928	32	3		3	RELN	7	103123972	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	93993	103123972	56014691	256	55301											
LAMB4	22798	broad.mit.edu	37	chr7	107746311	107746311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcttctgcatagggcgaCattcgctagcatggccattg	11	11	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107746311	A	A	107746311	3	1	51	1	0	0	0	0	1	0	0	0	8685	478	17	3	4572	3	LAMB4	7	107746311	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4622339	107746311	51392352	257	55302											
MET	4233	broad.mit.edu	37	chr7	116415240	116415240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggcctttgcagattaGgaacttagacaatggtgaaa	10	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116415240	T	T	116415240	1	4	51	0	1	0	0	0	0	0	0	0	9578	1015	35	2		2	MET	7	116415240	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	8668929	116415240	42723423	258	55303											
C7orf58	79974	broad.mit.edu	37	chr7	120768588	120768588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggtgactgggattagaGtagatcactgtaagctacct	11	7	2	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120768588	T	T	120768588	1	4	51	0	1	0	0	0	0	0	0	0	2430	1044	36	3		3	C7orf58	7	120768588	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4353348	120768588	38370075	259	55304											
PAX4	5078	broad.mit.edu	37	chr7	127254935	127254935	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagggaagggtacttacaCtgggagtcttgtcctgggtg	18	6	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127254935	T	T	127254935	3	4	51	1	0	0	0	0	1	0	0	0	11575	579	20	4	728	4	PAX4	7	127254935	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	6486347	127254935	31883728	260	55305											
BRAF	673	broad.mit.edu	37	chr7	140477740	140477740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccactgggaaccaggagCtaataaaaataacttctttc	6	10	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140477740	A	A	140477740	1	1	51	0	1	0	0	0	0	0	0	0	1505	812	28	3		3	BRAF	7	140477740	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	13222805	140477740	18660923	261	55306											
EPHB6	2051	broad.mit.edu	37	chr7	142568573	142568573	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctgccctgggcatcacCctggctggccaccagaagaa	11	16	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142568573	A	A	142568573	2	1	51	1	0	0	0	0	0	0	0	1	5220	610	22	2		2	EPHB6	7	142568573	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2090833	142568573	16570090	262	55307											
CLCN1	1180	broad.mit.edu	37	chr7	143018394	143018394	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaacatgccgggtacacgtCctggtgccgtggacacggct	14	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143018394	A	A	143018394	1	1	51	0	1	0	0	0	0	0	0	0	3493	870	30	3		3	CLCN1	7	143018394	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	449821	143018394	16120269	263	55308											
VIPR2	7434	broad.mit.edu	37	chr7	158896409	158896409	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctggtgcagtgttaggaAgtggaacctcaccaccgtag	12	10	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158896409	T	T	158896409	1	4	51	0	1	0	0	0	0	0	0	0	17297	87	3	5		5	VIPR2	7	158896409	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	15878015	158896409	242254	264	55309											
SGK223	157285	broad.mit.edu	37	chr8	8185691	8185691	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacaggatggtggcggttCccggggctcaacgaatagct	15	9	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8185691	A	A	8185691	2	1	51	1	0	0	0	0	0	0	0	1	14323	842	30	3		3	SGK223	8	8185691	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08		8185691	138178331	265	55310											
MSRA	4482	broad.mit.edu	37	chr8	10102618	10102618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttcttttttaaggaatGggatgtttctggggagctga	12	3	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10102618	T	T	10102618	3	4	51	1	0	0	0	0	1	0	0	0	9981	1348	47	2	243	2	MSRA	8	10102618	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1916927	10102618	136261404	266	55311											
MSR1	4481	broad.mit.edu	37	chr8	16032713	16032713	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctgccactattccaatgAgagggatgagaactgcaaac	9	10	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16032713	T	T	16032713	3	4	51	1	0	0	0	0	1	0	0	0	9980	304	11	5	1235	5	MSR1	8	16032713	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	5930095	16032713	130331309	267	55312											
CNOT7	29883	broad.mit.edu	37	chr8	17092352	17092352	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttaggattttgattaagTagccaaagtcgtaaccgcta	10	6	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17092352	C	C	17092352	3	2	51	1	0	0	0	0	1	0	0	0	3656	1638	57	5	384	5	CNOT7	8	17092352	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1059639	17092352	129271670	268	55313											
SH2D4A	63898	broad.mit.edu	37	chr8	19251949	19251949	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaagatgatcataaaccAcaaaagctttgtgtaaatca	5	6	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19251949	C	C	19251949	1	2	51	0	1	0	0	0	0	0	0	0	14348	174	6	5		5	SH2D4A	8	19251949	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2159597	19251949	127112073	269	55314											
TEX15	56154	broad.mit.edu	37	chr8	30700805	30700805	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctttcttcgtccttctttTgtgagtattttttgctgaag	8	8	2	2	rs149415841	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30700805	G	G	30700805	3	3	51	1	0	0	0	0	1	0	0	0	15901	1812	63	5	2656	5	TEX15	8	30700805	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	11448856	30700805	115663217	270	55315											
WRN	7486	broad.mit.edu	37	chr8	30954383	30954383	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attggtaagtgataaagaaaGatctctgtaaatacttactg	8	4	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30954383	T	T	30954383	1	4	51	0	1	0	0	0	0	0	0	0	17529	957	33	3		3	WRN	8	30954383	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	253578	30954383	115409639	271	55316											
UNC5D	137970	broad.mit.edu	37	chr8	35542338	35542338	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctggtgtgaaacaatcaaTgttaccttcttttccaaagt	7	8	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35542338	C	C	35542338	1	2	51	0	1	0	0	0	0	0	0	0	17121	1479	51	5		5	UNC5D	8	35542338	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	4587955	35542338	110821684	272	55317											
KCNU1	157855	broad.mit.edu	37	chr8	36663727	36663727	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctgaataatgctatctaGtgttcacttaaaattcttga	6	7	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36663727	C	C	36663727	1	2	51	0	1	0	0	0	0	0	0	0	8163	1044	36	4		4	KCNU1	8	36663727	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1121389	36663727	109700295	273	55318											
KCNU1	157855	broad.mit.edu	37	chr8	36721970	36721970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaagggaatctcctctcGtatatcagggcaggattctc	10	10	5	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36721970	T	T	36721970	3	4	51	1	0	0	0	0	1	0	0	0	8163	1145	40	3	2014	3	KCNU1	8	36721970	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	58243	36721970	109642052	274	55319											
ADAM2	2515	broad.mit.edu	37	chr8	39624684	39624684	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttactagacagttttcGcagcatggtccttcagcaca	8	12	2	1	rs150053966	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39624684	T	T	39624684	4	4	51	1	0	0	0	0	0	1	0	0	241	1079	38	3	940	3	ADAM2	8	39624684	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2902714	39624684	106739338	275	55320											
LYN	4067	broad.mit.edu	37	chr8	56891274	56891274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaggaggaggtggggttgcAgcgcaggcgacggagttctg	20	6	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56891274	T	T	56891274	1	4	51	0	1	0	0	0	0	0	0	0	9195	203	7	5		5	LYN	8	56891274	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	17266590	56891274	89472748	276	55321											
CYP7B1	9420	broad.mit.edu	37	chr8	65508617	65508617	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaataaggaacatttatgCatgattaaatattgaagtga	8	2	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65508617	A	A	65508617	1	1	51	0	1	0	0	0	0	0	0	0	4230	725	25	3		3	CYP7B1	8	65508617	3'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	8617343	65508617	80855405	277	55322											
MYBL1	4603	broad.mit.edu	37	chr8	67477047	67477047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccataaaccactgtttccCattcacaatttgactagaaa	3	12	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67477047	A	A	67477047	3	1	51	1	0	0	0	0	1	0	0	0	10103	595	21	2	118	2	MYBL1	8	67477047	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1968430	67477047	78886975	278	55323											
MYBL1	4603	broad.mit.edu	37	chr8	67492484	67492484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgctgagcagacacagGctgattttcatccatactgt	8	10	2	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67492484	T	T	67492484	3	4	51	1	0	0	0	0	1	0	0	0	10103	1203	42	3	1305	3	MYBL1	8	67492484	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	15437	67492484	78871538	279	55324											
PRDM14	63978	broad.mit.edu	37	chr8	70980553	70980553	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccaaacctgactcctttgGcgataaaactactgcagaac	7	13	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70980553	C	C	70980553	3	2	51	1	0	0	0	0	1	0	0	0	12561	1203	42	4	911	4	PRDM14	8	70980553	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3488069	70980553	75383469	280	55325											
EYA1	2138	broad.mit.edu	37	chr8	72211810	72211810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaacagatctttctttaCataagaaaatcatgttgcat	4	6	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72211810	A	A	72211810	1	1	51	0	1	0	0	0	0	0	0	0	5371	493	17	3		3	EYA1	8	72211810	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1231257	72211810	74152212	281	55326											
ZFHX4	79776	broad.mit.edu	37	chr8	77690624	77690624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggcctggcaccagaggagGacaacctcagtgagatcttt	12	10	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77690624	T	T	77690624	3	4	51	1	0	0	0	0	1	0	0	0	17761	1174	41	3	3284	3	ZFHX4	8	77690624	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5478814	77690624	68673398	282	55327											
CNGB3	54714	broad.mit.edu	37	chr8	87679506	87679506	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaacattcaacaccattctGcctctggactgtgaggctcc	7	13	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87679506	C	C	87679506	1	2	51	0	1	0	0	0	0	0	0	0	3633	1334	46	4		4	CNGB3	8	87679506	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	9988882	87679506	58684516	283	55328											
MMP16	4325	broad.mit.edu	37	chr8	89209556	89209556	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaataacaagtacagttTcttttagatcaattttacaa	4	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89209556	A	A	89209556	1	1	51	0	1	0	0	0	0	0	0	0	9748	1798	62	5		5	MMP16	8	89209556	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1530050	89209556	57154466	284	55329											
SLC26A7	115111	broad.mit.edu	37	chr8	92352583	92352583	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcattgcaagttgttacAgaaattacatgaagtttgat	7	4	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92352583	C	C	92352583	1	2	51	0	1	0	0	0	0	0	0	0	14636	203	7	5		5	SLC26A7	8	92352583	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	3143027	92352583	54011439	285	55330											
PTDSS1	9791	broad.mit.edu	37	chr8	97299396	97299397	+	Intron	INS	-	T	T													atgtacttgtcagtggcctcINSttggagaaactcgtagactc							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97299397	T	T	97299396	6	5	51	0	1	1	1	0	0	0	0	0	12842	928	32	0		0	PTDSS1	8	97299396	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	4946813	97299396	49064626	286	55331											
KCNS2	3788	broad.mit.edu	37	chr8	99441275	99441275	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgaaaaggaggagaacgaGggcctggccaccatccctgc	13	11	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99441275	A	A	99441275	2	1	51	1	0	0	0	0	0	0	0	1	8159	991	35	4		4	KCNS2	8	99441275	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2141879	99441275	46922747	287	55332											
UBR5	51366	broad.mit.edu	37	chr8	103331276	103331276	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caactaacgagcaaaataacCagctaacatcatgacaggat	6	10	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103331276	G	G	103331276	1	3	51	0	1	0	0	0	0	0	0	0	17031	609	21	4		4	UBR5	8	103331276	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3890001	103331276	43032746	288	55333											
RIMS2	9699	broad.mit.edu	37	chr8	104672372	104672372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcttccacgtcaattacCtggatgttgaggagctgagc	12	9	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104672372	A	A	104672372	1	1	51	0	1	0	0	0	0	0	0	0	13479	696	24	2		2	RIMS2	8	104672372	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1341096	104672372	41691650	289	55334											
PKHD1L1	93035	broad.mit.edu	37	chr8	110535061	110535061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatcactcagccggtggCagcacagccaggacagccat	12	13	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110535061	A	A	110535061	3	1	51	1	0	0	0	0	1	0	0	0	12067	710	25	3	12570	3	PKHD1L1	8	110535061	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5862689	110535061	35828961	290	55335											
TRPS1	7227	broad.mit.edu	37	chr8	116454784	116454784	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccaagtatggtgcgtgtgTgtgtgtgtgtgtgtgtgtgt	17	3	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116454784	C	C	116454784	1	2	51	0	1	0	0	0	0	0	0	0	16718	1711	59	5		5	TRPS1	8	116454784	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	5919723	116454784	29909238	291	55336											
EXT1	2131	broad.mit.edu	37	chr8	118831993	118831993	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagaccaggggggtcacCgcatggatgactgcagtgaa	16	8	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118831993	A	A	118831993	2	1	51	1	0	0	0	0	0	0	0	1	5366	639	23	1		1	EXT1	8	118831993	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2377209	118831993	27532029	292	55337											
TG	7038	broad.mit.edu	37	chr8	133984821	133984822	+	Intron	INS	-	TT	TT													ttcctgattgtggttttttgINSttttttttttttccacccca					rs1554541		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	133984822	TT	TT	133984821	6	5	51	0	1	1	1	0	0	0	0	0	15936	1392	48	0		0	TG	8	133984821	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	15152828	133984821	12379201	293	55338											
FAM135B	51059	broad.mit.edu	37	chr8	139155211	139155211	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcaaacactcaaaaatgtCccccctcttcccccagcatt	3	18	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139155211	A	A	139155211	1	1	51	0	1	0	0	0	0	0	0	0	5495	870	30	3		3	FAM135B	8	139155211	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5170390	139155211	7208811	294	55339											
COL22A1	169044	broad.mit.edu	37	chr8	139889974	139889974	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcttgggaggggccgcatGgggcccgggcgcactcactt	16	13	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139889974	A	A	139889974	1	1	51	0	1	0	0	0	0	0	0	0	3713	1363	47	4		4	COL22A1	8	139889974	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	734763	139889974	6474048	295	55340											
CYP11B2	1585	broad.mit.edu	37	chr8	143996675	143996675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccattcctacagaggccagGgcagagcttgtgaggccgcc	13	14	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143996675	T	T	143996675	1	4	51	0	1	0	0	0	0	0	0	0	4179	1247	43	2		2	CYP11B2	8	143996675	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4106701	143996675	2367347	296	55341											
CNTLN	54875	broad.mit.edu	37	chr9	17486954	17486954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagttcatataaatttcGttaacaccagtgtttttatt	4	6	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17486954	T	T	17486954	1	4	51	0	1	0	0	0	0	0	0	0	3671	1160	40	3		3	CNTLN	9	17486954	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08		17486954	123726477	297	55342											
AQP7	364	broad.mit.edu	37	chr9	33391544	33391544	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccatccaactctcccccaCagccaggaggccagctccaa	7	20	1	0	rs145343414	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33391544	G	G	33391544	1	3	51	0	1	0	0	0	0	0	0	0	833	493	17	4		4	AQP7	9	33391544	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	15904590	33391544	107821887	298	55343											
PIGO	84720	broad.mit.edu	37	chr9	35091498	35091498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtagatttgagggaccaCataatccaagtcagcttgag	11	8	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35091498	A	A	35091498	3	1	51	1	0	0	0	0	1	0	0	0	11989	478	17	3	903	3	PIGO	9	35091498	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1699954	35091498	106121933	299	55344											
GRIN3A	116443	broad.mit.edu	37	chr9	104432892	104432892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctccatactttccatccCctacaatatagaggtcgaag	6	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104432892	A	A	104432892	3	1	51	1	0	0	0	0	1	0	0	0	6849	623	22	2	1573	2	GRIN3A	9	104432892	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	69341394	104432892	36780539	300	55345											
KIAA1958	158405	broad.mit.edu	37	chr9	115337360	115337360	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccctgcagctgcctggacagGatgagcaagttgcctctgaa	12	12	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115337360	C	C	115337360	3	2	51	1	0	0	0	0	1	0	0	0	8334	1174	41	4	1002	4	KIAA1958	9	115337360	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	10904468	115337360	25876071	301	55346											
OR1K1	392392	broad.mit.edu	37	chr9	125562401	125562401	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgaataaccagcctgcCatggaggctgccaatgagtc	12	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125562401	A	A	125562401	1	1	51	0	1	0	0	0	0	0	0	0	11056	609	21	2		2	OR1K1	9	125562401	5'Flank	SNP	C	TCGA-17-Z018-01A-01W-0746-08	10225041	125562401	15651030	302	55347											
RC3H2	54542	broad.mit.edu	37	chr9	125620998	125620998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggtggctgacaagccaCcgaataatatccatctaatg	8	10	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125620998	A	A	125620998	3	1	51	1	0	0	0	0	1	0	0	0	13275	507	18	3	1460	3	RC3H2	9	125620998	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	58597	125620998	15592433	303	55348											
DENND1A	57706	broad.mit.edu	37	chr9	126643100	126643100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaactgtttccccccacGttttcatatctcttacaacc	3	14	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126643100	A	A	126643100	1	1	51	0	1	0	0	0	0	0	0	0	4466	1160	40	4		4	DENND1A	9	126643100	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1022102	126643100	14570331	304	55349											
LCN1	3933	broad.mit.edu	37	chr9	138417022	138417022	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtgagtgaacagctttaGaggacatttgagaaaatcca	12	5	0	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138417022	T	T	138417022	1	4	51	0	1	0	0	0	0	0	0	0	8752	957	33	3		3	LCN1	9	138417022	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	11773922	138417022	2796409	305	55350											
MAN1B1	11253	broad.mit.edu	37	chr9	139997282	139997285	+	Intron	DEL	ACAC	-	-													gcgtgcaggtcggtggtgttAcacacattcacactgttgca					rs71835567		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139997285	-	-	139997282	6	5	51	0	1	1	0	1	0	0	0	0	9304	406	14	0		0	MAN1B1	9	139997282	Intron	DEL	ACAC	TCGA-17-Z018-01A-01W-0746-08	1580260	139997282	1216149	306	55351											
CACNA1B	774	broad.mit.edu	37	chr9	140953512	140953512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaaacccatggccaacaGtgcctattccccgggcagtt	9	15	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140953512	T	T	140953512	1	4	51	0	1	0	0	0	0	0	0	0	2565	1044	36	3		3	CACNA1B	9	140953512	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	956230	140953512	259919	307	55352											
PFKP	5214	broad.mit.edu	37	chr10	3147579	3147579	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgctgttgccttgtccAcataggtacctggccctggt	11	11	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3147579	T	T	3147579	1	4	51	0	1	0	0	0	0	0	0	0	11861	174	6	5		5	PFKP	10	3147579	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08		3147579	132387168	308	55353											
SFMBT2	57713	broad.mit.edu	37	chr10	7239690	7239690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgcttaggaccacagCcccagaccctaggggacccc	10	17	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7239690	A	A	7239690	1	1	51	0	1	0	0	0	0	0	0	0	14271	754	26	3		3	SFMBT2	10	7239690	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4092111	7239690	128295057	309	55354											
LYZL1	84569	broad.mit.edu	37	chr10	29581544	29581544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcatcttccagatcaacaGcttcgcgtggtgcagacgcg	12	12	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29581544	T	T	29581544	3	4	51	1	0	0	0	0	1	0	0	0	9219	971	34	3	384	3	LYZL1	10	29581544	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	22341854	29581544	105953203	310	55355											
BMS1	9790	broad.mit.edu	37	chr10	43292652	43292652	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaagaagattacaaggaaGaaaataatgattccaaagaa	9	3	0	5			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43292652	T	T	43292652	4	4	51	1	0	0	0	0	0	1	0	0	1478	943	33	3	1994	3	BMS1	10	43292652	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	13711108	43292652	92242095	311	55356											
RET	5979	broad.mit.edu	37	chr10	43617524	43617524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacacccttatacatgtagTggggccacgacgcccgtctg	10	13	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43617524	A	A	43617524	1	1	51	0	1	0	0	0	0	0	0	0	13343	1711	59	5		5	RET	10	43617524	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	324872	43617524	91917223	312	55357											
OGDHL	55753	broad.mit.edu	37	chr10	50952126	50952126	+	Missense_Mutation	SNP	G	T	T													cctcagggatccccgtggctGggcatgtcatgctcttgggc							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50952126	T	T	50952126	3	4	51	1	0	0	0	0	1	0	0	0	10935	1348	47	2	1297	2	OGDHL	10	50952126	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	7334602	50952126	84582621	313	55358	264	2									
OGDHL	55753	broad.mit.edu	37	chr10	50952128	50952128	+	Nonsense_Mutation	SNP	G	T	T													tcagggatccccgtggctggGcatgtcatgctcttgggctc							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50952128	T	T	50952128	4	4	51	1	0	0	0	0	0	1	0	0	10935	1195	42	3	1299	3	OGDHL	10	50952128	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2	50952128	84582619	314	55359	264	2									
PCDH15	65217	broad.mit.edu	37	chr10	55582372	55582372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaatgtaaaacacaaGgccttgaaggagaaagttcc	11	6	0	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55582372	A	A	55582372	3	1	51	1	0	0	0	0	1	0	0	0	11605	1000	35	4	2363	4	PCDH15	10	55582372	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4630244	55582372	79952375	315	55360											
PHYHIPL	84457	broad.mit.edu	37	chr10	60996106	60996106	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttttccctccttccttcCctccctccttcccttcttcc	0	23	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60996106	G	G	60996106	1	3	51	0	1	0	0	0	0	0	0	0	11962	638	22	4		4	PHYHIPL	10	60996106	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5413734	60996106	74538641	316	55361											
ZNF365	22891	broad.mit.edu	37	chr10	64395882	64395882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgggcaagccttccgcGtgcattgcctccactcactc	8	18	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64395882	T	T	64395882	1	4	51	0	1	0	0	0	0	0	0	0	17995	1160	40	3		3	ZNF365	10	64395882	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3399776	64395882	71138865	317	55362											
LRRTM3	347731	broad.mit.edu	37	chr10	68687247	68687247	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttggacctgggatataaCcggatccgaagtttagccag	11	9	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68687247	G	G	68687247	3	3	51	1	0	0	0	0	1	0	0	0	9128	506	18	4	579	4	LRRTM3	10	68687247	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4291365	68687247	66847500	318	55363											
NRG3	10718	broad.mit.edu	37	chr10	84744686	84744686	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagtcacttcacctatcTgagcttcagtttacttctct	6	12	5	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84744686	G	G	84744686	1	3	51	0	1	0	0	0	0	0	0	0	10744	1595	55	5		5	NRG3	10	84744686	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	16057439	84744686	50790061	319	55364											
LRIT1	26103	broad.mit.edu	37	chr10	85992129	85992129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtcttcccaggctgcaCaatcacccgccgcatgctgt	9	16	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85992129	A	A	85992129	3	1	51	1	0	0	0	0	1	0	0	0	9034	478	17	3	449	3	LRIT1	10	85992129	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1247443	85992129	49542618	320	55365											
LIPA	3988	broad.mit.edu	37	chr10	90982215	90982215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtttgcatgcccagaCctttctgatgttgattttac	9	8	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90982215	A	A	90982215	1	1	51	0	1	0	0	0	0	0	0	0	8892	522	18	3		3	LIPA	10	90982215	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4990086	90982215	44552532	321	55366											
IFIT1B	439996	broad.mit.edu	37	chr10	91144373	91144373	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtattcaccagaatgtaCgggttgtggaaagtgtcagc	13	6	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91144373	A	A	91144373	2	1	51	1	0	0	0	0	0	0	0	1	7592	527	19	3		3	IFIT1B	10	91144373	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	162158	91144373	44390374	322	55367											
HECTD2	143279	broad.mit.edu	37	chr10	93258885	93258885	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattatggatttcatagtgTgtgtgcttcaaatgccctaa	8	6	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93258885	C	C	93258885	3	2	51	1	0	0	0	0	1	0	0	0	7107	1696	59	5	2022	5	HECTD2	10	93258885	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	2114512	93258885	42275862	323	55368											
CYP2C19	1557	broad.mit.edu	37	chr10	96535174	96535174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagcaatggaaagagatGgaaggagatccggcgtttct	13	6	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96535174	T	T	96535174	3	4	51	1	0	0	0	0	1	0	0	0	4199	1357	47	2	369	2	CYP2C19	10	96535174	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3276289	96535174	38999573	324	55369											
CYP2C9	1559	broad.mit.edu	37	chr10	96701516	96701516	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcctgtgtggctgaatAaaagcatacaaatacaatga	9	6	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96701516	T	T	96701516	1	4	51	0	1	0	0	0	0	0	0	0	4201	377	13	5		5	CYP2C9	10	96701516	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	166342	96701516	38833231	325	55370											
SORBS1	10580	broad.mit.edu	37	chr10	97197462	97197462	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctaggccttggttcctaTgaggccctctgccgagaatg	11	13	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97197462	A	A	97197462	1	1	51	0	1	0	0	0	0	0	0	0	15041	1479	51	5		5	SORBS1	10	97197462	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	495946	97197462	38337285	326	55371											
HPSE2	60495	broad.mit.edu	37	chr10	100374754	100374754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgccctgattggccagCattcctaaagtgttcaacca	7	12	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100374754	A	A	100374754	3	1	51	1	0	0	0	0	1	0	0	0	7412	710	25	3	605	3	HPSE2	10	100374754	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3177292	100374754	35159993	327	55372											
PDZD7	79955	broad.mit.edu	37	chr10	102783726	102783726	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgctgacgaagatgcccAggccatgctctgagcccccg	11	15	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102783726	G	G	102783726	3	3	51	1	0	0	0	0	1	0	0	0	11798	188	7	5	1259	5	PDZD7	10	102783726	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2408972	102783726	32751021	328	55373											
NOLC1	9221	broad.mit.edu	37	chr10	103922042	103922042	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgacctgaggccatcttcGgtgaagcaagggtgatgatc	14	8	1	5			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103922042	C	C	103922042	1	2	51	0	1	0	0	0	0	0	0	0	10624	1131	39	4		4	NOLC1	10	103922042	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1138316	103922042	31612705	329	55374											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105362155	105362155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtggccttcttgctctgGttgacggtgttcagtgcttg	15	9	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105362155	T	T	105362155	3	4	51	1	0	0	0	0	1	0	0	0	14369	1252	44	3	585	3	SH3PXD2A	10	105362155	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1440113	105362155	30172592	330	55375											
SORCS3	22986	broad.mit.edu	37	chr10	106675714	106675714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagactgggtcagtaggtcCtgagcactcctgctgggtag	15	9	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106675714	T	T	106675714	1	4	51	0	1	0	0	0	0	0	0	0	15046	696	24	4		4	SORCS3	10	106675714	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1313559	106675714	28859033	331	55376											
SORCS3	22986	broad.mit.edu	37	chr10	106960809	106960809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaggctaatgcttcttGttgacaactggtttatttca	8	7	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106960809	T	T	106960809	1	4	51	0	1	0	0	0	0	0	0	0	15046	1392	48	3		3	SORCS3	10	106960809	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	285095	106960809	28573938	332	55377											
NHLRC2	374354	broad.mit.edu	37	chr10	115664629	115664629	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggcccgttcctagtagaAaaacagaagacattacccaa	8	10	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115664629	G	G	115664629	2	3	51	1	0	0	0	0	0	0	0	1	10501	11	1	5		5	NHLRC2	10	115664629	Silent	SNP	A	TCGA-17-Z018-01A-01W-0746-08	8703820	115664629	19870118	333	55378											
SLC18A2	6571	broad.mit.edu	37	chr10	119014861	119014861	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggtgctggccgccctGgtactcttggatggaggtga	15	10	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119014861	T	T	119014861	2	4	51	1	0	0	0	0	0	0	0	1	14539	1335	47	2		2	SLC18A2	10	119014861	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3350232	119014861	16519886	334	55379											
TACC2	10579	broad.mit.edu	37	chr10	123970361	123970361	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttaaaaaagaaacagaccAccaagaaacccacagagacc	5	13	0	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123970361	T	T	123970361	3	4	51	1	0	0	0	0	1	0	0	0	15621	159	6	5	6523	5	TACC2	10	123970361	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	4955500	123970361	11564386	335	55380											
CPXM2	119587	broad.mit.edu	37	chr10	125506587	125506587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcttgctaatgcagatcCcgccagccctcctccaagac	7	17	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125506587	A	A	125506587	1	1	51	0	1	0	0	0	0	0	0	0	3870	638	22	2		2	CPXM2	10	125506587	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1536226	125506587	10028160	336	55381											
C10orf137	26098	broad.mit.edu	37	chr10	127431758	127431758	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaatccagaacactatgtaCaagtattaaagagaatgggt	8	5	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127431758	G	G	127431758	3	3	51	1	0	0	0	0	1	0	0	0	1605	479	17	4	2467	4	C10orf137	10	127431758	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1925171	127431758	8102989	337	55382											
EBF3	253738	broad.mit.edu	37	chr10	131760398	131760398	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaggacaacccaggcccaGcagtgaaaactcgtgcagag	11	14	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131760398	C	C	131760398	1	2	51	0	1	0	0	0	0	0	0	0	4922	986	34	4		4	EBF3	10	131760398	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4328640	131760398	3774349	338	55383											
SLC22A18	5002	broad.mit.edu	37	chr11	2943331	2943331	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accctctctgtctggctctaGgtgacccagggcctggtcat	11	14	4	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2943331	C	C	2943331	5	2	51	1	0	0	0	0	0	0	1	0	14562	1014	35	4	894	4	SLC22A18	11	2943331	Splice_Site	SNP	G	TCGA-17-Z018-01A-01W-0746-08		2943331	132063185	339	55384											
NUP98	4928	broad.mit.edu	37	chr11	3707286	3707286	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccagcgtaactggcctgTagcacaccttcacactgcgc	10	15	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3707286	C	C	3707286	2	2	51	1	0	0	0	0	0	0	0	1	10868	1625	57	5		5	NUP98	11	3707286	Silent	SNP	T	TCGA-17-Z018-01A-01W-0746-08	763955	3707286	131299230	340	55385											
TRIM21	6737	broad.mit.edu	37	chr11	4406464	4406464	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaagaggcagggtttgTggctgagaagcggtgccaat	18	5	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4406464	A	A	4406464	1	1	51	0	1	0	0	0	0	0	0	0	16619	1711	59	5		5	TRIM21	11	4406464	3'UTR	SNP	T	TCGA-17-Z018-01A-01W-0746-08	699178	4406464	130600052	341	55386											
OR52J3	119679	broad.mit.edu	37	chr11	5068347	5068347	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaaacattcgtatcaatGgtatctatgggctttttgta	10	5	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5068347	A	A	5068347	3	1	51	1	0	0	0	0	1	0	0	0	11216	1348	47	4	594	4	OR52J3	11	5068347	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	661883	5068347	129938169	342	55387											
DCHS1	8642	broad.mit.edu	37	chr11	6647086	6647086	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaagggaccagatgagttCaaggcagggcttgaaactgg	15	8	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6647086	A	A	6647086	1	1	51	0	1	0	0	0	0	0	0	0	4320	841	29	3		3	DCHS1	11	6647086	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1578739	6647086	128359430	343	55388											
DCHS1	8642	broad.mit.edu	37	chr11	6647528	6647528	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgaaggcaaaggctcCtccactctctgcctgcagca	9	15	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6647528	A	A	6647528	4	1	51	1	0	0	0	0	0	1	0	0	4320	690	24	2	3472	2	DCHS1	11	6647528	Nonsense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	442	6647528	128358988	344	55389											
OR10A4	283297	broad.mit.edu	37	chr11	6898812	6898812	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatccacaggaccctgggcTctcagaaactatgattggct	9	11	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6898812	C	C	6898812	3	2	51	1	0	0	0	0	1	0	0	0	10986	1551	54	5	936	5	OR10A4	11	6898812	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	251284	6898812	128107704	345	55390											
MICAL2	9645	broad.mit.edu	37	chr11	12225804	12225804	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctctgcagtgtctcaTagttgggggaggaccctgtg	13	11	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12225804	C	C	12225804	3	2	51	1	0	0	0	0	1	0	0	0	9663	1406	49	5	278	5	MICAL2	11	12225804	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	5326992	12225804	122780712	346	55391											
SPON1	10418	broad.mit.edu	37	chr11	14157044	14157044	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaatatggaggatatgCcagcgaaggcgtcaaacaag	15	6	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14157044	T	T	14157044	3	4	51	1	0	0	0	0	1	0	0	0	15200	739	26	4	776	4	SPON1	11	14157044	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1931240	14157044	120849472	347	55392											
PLEKHA7	144100	broad.mit.edu	37	chr11	16848117	16848117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctgggggacagcctgcCgctccaccttctccatatcc	10	17	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16848117	A	A	16848117	3	1	51	1	0	0	0	0	1	0	0	0	12156	652	23	1	2528	1	PLEKHA7	11	16848117	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2691073	16848117	118158399	348	55393											
NELL1	4745	broad.mit.edu	37	chr11	21191365	21191365	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggacagaatcagcctgcTgagcccgatgcaagtgcttg	14	10	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21191365	G	G	21191365	1	3	51	0	1	0	0	0	0	0	0	0	10428	1595	55	5		5	NELL1	11	21191365	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	4343248	21191365	113815151	349	55394											
ANO3	63982	broad.mit.edu	37	chr11	26620592	26620592	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgggattctaaatttAgaagtaagttcaatgatacc	8	4	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26620592	G	G	26620592	1	3	51	0	1	0	0	0	0	0	0	0	698	435	15	5		5	ANO3	11	26620592	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	5429227	26620592	108385924	350	55395											
CCDC34	91057	broad.mit.edu	37	chr11	27371802	27371802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagtattttttaaaacCtaggtaatgaagtataatag	8	2	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27371802	A	A	27371802	1	1	51	0	1	0	0	0	0	0	0	0	2834	681	24	2		2	CCDC34	11	27371802	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	751210	27371802	107634714	351	55396											
ELP4	26610	broad.mit.edu	37	chr11	31648715	31648715	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccagaacatcatttatgagGaaggatttgatggatccaat	9	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31648715	C	C	31648715	3	2	51	1	0	0	0	0	1	0	0	0	5124	1175	41	4	734	4	ELP4	11	31648715	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4276913	31648715	103357801	352	55397											
QSER1	79832	broad.mit.edu	37	chr11	32954592	32954592	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcaggggagtccctaacAttaacagccccttctctttc	7	14	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32954592	G	G	32954592	2	3	51	1	0	0	0	0	0	0	0	1	12990	204	8	5		5	QSER1	11	32954592	Silent	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1305877	32954592	102051924	353	55398											
RAG2	5897	broad.mit.edu	37	chr11	36614854	36614854	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtcctctaaagagatgaTgttgcagatcattctttttt	8	6	3	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36614854	A	A	36614854	3	1	51	1	0	0	0	0	1	0	0	0	13113	1464	51	5	722	5	RAG2	11	36614854	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	3660262	36614854	98391662	354	55399											
ACCS	84680	broad.mit.edu	37	chr11	44097139	44097139	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacggtgctgtgtgaggccGggggtaagtgagctctgtgg	19	8	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44097139	A	A	44097139	3	1	51	1	0	0	0	0	1	0	0	0	133	1116	39	4	571	4	ACCS	11	44097139	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	7482285	44097139	90909377	355	55400											
NUP160	23279	broad.mit.edu	37	chr11	47843375	47843375	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagtcaatcagtgtctccTaggaggaaatgtgggaaaaa	11	6	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47843375	A	A	47843375	5	1	51	1	0	0	0	0	0	0	1	0	10852	1536	53	5	3244	5	NUP160	11	47843375	Splice_Site	SNP	T	TCGA-17-Z018-01A-01W-0746-08	3746236	47843375	87163141	356	55401											
OR10Q1	219960	broad.mit.edu	37	chr11	57995391	57995391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgcccctaagccttcaGttggcgtcagaggctgcttt	11	13	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995391	T	T	57995391	3	4	51	1	0	0	0	0	1	0	0	0	11010	1020	36	3	6	3	OR10Q1	11	57995391	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	10152016	57995391	77011125	357	55402											
OR10Q1	219960	broad.mit.edu	37	chr11	57996246	57996246	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaagtagaggaggaggaaGagaaggaagagaagaacctg	16	3	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57996246	C	C	57996246	2	2	51	1	0	0	0	0	0	0	0	1	11010	929	33	4		4	OR10Q1	11	57996246	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	855	57996246	77010270	358	55403											
GIF	2694	broad.mit.edu	37	chr11	59610572	59610572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtctcggcaggaggagGtgagggccatgatggtgagg	21	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59610572	T	T	59610572	3	4	51	1	0	0	0	0	1	0	0	0	6440	1261	44	3	982	3	GIF	11	59610572	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1614326	59610572	75395944	359	55404											
MTA2	9219	broad.mit.edu	37	chr11	62362134	62362134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacagaaaactttcgcacCttttcttcccacgcagttcc	4	14	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62362134	A	A	62362134	1	1	51	0	1	0	0	0	0	0	0	0	10003	696	24	2		2	MTA2	11	62362134	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2751562	62362134	72644382	360	55405											
ARHGEF17	9828	broad.mit.edu	37	chr11	73070953	73070953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggacctcaccaccctgGgccaaatgagcaagctctct	9	14	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73070953	T	T	73070953	3	4	51	1	0	0	0	0	1	0	0	0	902	1232	43	2	4200	2	ARHGEF17	11	73070953	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	10708819	73070953	61935563	361	55406											
MAP6	4135	broad.mit.edu	37	chr11	75356120	75356120	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagggcagctgttgcaGcatccagttcatctcaagga	11	11	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75356120	C	C	75356120	1	2	51	0	1	0	0	0	0	0	0	0	9356	986	34	4		4	MAP6	11	75356120	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2285167	75356120	59650396	362	55407											
DLG2	1740	broad.mit.edu	37	chr11	83585468	83585468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattattatcttacccttcCagggagacggcccgttggag	11	10	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83585468	A	A	83585468	2	1	51	1	0	0	0	0	0	0	0	1	4595	581	21	2		2	DLG2	11	83585468	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	8229348	83585468	51421048	363	55408											
CCDC83	220047	broad.mit.edu	37	chr11	85627344	85627344	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagaaatgctgttttaattGagaaaattaacctaaaatat	6	3	0	2	rs12269739	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85627344	A	A	85627344	1	1	51	0	1	0	0	0	0	0	0	0	2885	1305	45	4		4	CCDC83	11	85627344	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2041876	85627344	49379172	364	55409											
FAT3	120114	broad.mit.edu	37	chr11	92085981	92085981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctggaaattttggctgtgGaccggggaatgaaactgtat	13	5	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92085981	T	T	92085981	3	4	51	1	0	0	0	0	1	0	0	0	5748	1174	41	3	705	3	FAT3	11	92085981	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	6458637	92085981	42920535	365	55410											
FAT3	120114	broad.mit.edu	37	chr11	92570949	92570949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcccggtgtttacacctGccaactatactgctgtgatt	8	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92570949	T	T	92570949	3	4	51	1	0	0	0	0	1	0	0	0	5748	1319	46	3	10407	3	FAT3	11	92570949	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	484968	92570949	42435567	366	55411											
PIWIL4	143689	broad.mit.edu	37	chr11	94320540	94320540	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttactcatctgtttagaaGacctggttgttttgctgtct	8	7	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94320540	A	A	94320540	1	1	51	0	1	0	0	0	0	0	0	0	12055	957	33	4		4	PIWIL4	11	94320540	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1749591	94320540	40685976	367	55412											
MMP27	64066	broad.mit.edu	37	chr11	102573850	102573850	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccggagtatagtttattattCttaaaaattaacaaaaatat	4	4	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102573850	A	A	102573850	5	1	51	1	0	0	0	0	0	0	1	0	9758	927	32	3	1232	3	MMP27	11	102573850	Splice_Site	SNP	C	TCGA-17-Z018-01A-01W-0746-08	8253310	102573850	32432666	368	55413											
CASP4	837	broad.mit.edu	37	chr11	104825561	104825561	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcttctcttgcatagagtCtgccatgacccgaactttgt	8	11	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104825561	A	A	104825561	3	1	51	1	0	0	0	0	1	0	0	0	2699	913	32	3	986	3	CASP4	11	104825561	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2251711	104825561	30180955	369	55414											
KDELC2	143888	broad.mit.edu	37	chr11	108348368	108348368	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatagtagcagtaaagcctgTgtggctgtagtaggtcccta	12	7	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108348368	C	C	108348368	3	2	51	1	0	0	0	0	1	0	0	0	8188	1696	59	5	167	5	KDELC2	11	108348368	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	3522807	108348368	26658148	370	55415											
DRD2	1813	broad.mit.edu	37	chr11	113295303	113295303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccgccttcccgtctgacCcgttgaagggccggctccag	12	16	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113295303	A	A	113295303	3	1	51	1	0	0	0	0	1	0	0	0	4797	623	22	2	1288	2	DRD2	11	113295303	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4946935	113295303	21711213	371	55416											
FAM55B	120406	broad.mit.edu	37	chr11	114550400	114550400	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atactcactttgtttccaaaTgccatagctcgaaaattact	4	10	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114550400	C	C	114550400	2	2	51	1	0	0	0	0	0	0	0	1	5636	1461	51	5		5	FAM55B	11	114550400	Silent	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1255097	114550400	20456116	372	55417											
PHLDB1	23187	broad.mit.edu	37	chr11	118495803	118495803	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgacgggggcagggtgctgGgttgatggtgttcctgcagc	19	9	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118495803	A	A	118495803	1	1	51	0	1	0	0	0	0	0	0	0	11946	1247	43	4		4	PHLDB1	11	118495803	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3945403	118495803	16510713	373	55418											
OR8B2	26595	broad.mit.edu	37	chr11	124252675	124252675	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgacataggtgctggtgcAggaaagctggaggaggggga	20	4	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124252675	T	T	124252675	3	4	51	1	0	0	0	0	1	0	0	0	11321	188	7	5	379	5	OR8B2	11	124252675	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	5756872	124252675	10753841	374	55419											
NTM	50863	broad.mit.edu	37	chr11	131550307	131550307	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgcgtctgtgtaggcAtgtgtgcctctgtgtctgtg	16	7	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131550307	G	G	131550307	1	3	51	0	1	0	0	0	0	0	0	0	10794	232	8	5		5	NTM	11	131550307	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	7297632	131550307	3456209	375	55420											
OVCH1	341350	broad.mit.edu	37	chr12	29604479	29604479	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaaagcctctaggcttttCtagctctgcttcagagcaac	7	11	4	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29604479	A	A	29604479	4	1	51	1	0	0	0	0	0	1	0	0	11417	922	32	3	878	3	OVCH1	12	29604479	Nonsense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08		29604479	104247416	376	55421											
CNTN1	1272	broad.mit.edu	37	chr12	41419071	41419071	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccagtattttatagaagtCggggcctgcaatagtgcagg	12	8	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41419071	A	A	41419071	2	1	51	1	0	0	0	0	0	0	0	1	3672	871	31	3		3	CNTN1	12	41419071	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	11814592	41419071	92432824	377	55422											
PDZRN4	29951	broad.mit.edu	37	chr12	41967025	41967025	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggttttagaaggcagcaAgcttcctgatcaagagaagg	13	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41967025	T	T	41967025	3	4	51	1	0	0	0	0	1	0	0	0	11804	72	3	5	2555	5	PDZRN4	12	41967025	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	547954	41967025	91884870	378	55423											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777382	43777382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatgagtctgctgttacCacaatgtaattgcaaggagg	12	6	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43777382	A	A	43777382	2	1	51	1	0	0	0	0	0	0	0	1	266	581	21	2		2	ADAMTS20	12	43777382	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1810357	43777382	90074513	379	55424											
SLC38A4	55089	broad.mit.edu	37	chr12	47162214	47162214	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagacaaacacagggcaaGgtcaatgtcttacccagcag	10	10	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47162214	T	T	47162214	1	4	51	0	1	0	0	0	0	0	0	0	14720	1015	35	2		2	SLC38A4	12	47162214	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3384832	47162214	86689681	380	55425											
KRT82	3888	broad.mit.edu	37	chr12	52788708	52788708	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccctggtgggagtgtgaCatccagggccatggggcagg	18	10	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52788708	A	A	52788708	1	1	51	0	1	0	0	0	0	0	0	0	8567	493	17	3		3	KRT82	12	52788708	3'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5626494	52788708	81063187	381	55426											
KIF5A	3798	broad.mit.edu	37	chr12	57966311	57966311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcctctgcctgggctgGgcaagggagcaggaggatgg	20	8	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57966311	T	T	57966311	1	4	51	0	1	0	0	0	0	0	0	0	8375	1247	43	2		2	KIF5A	12	57966311	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5177603	57966311	75885584	382	55427											
FAM19A2	338811	broad.mit.edu	37	chr12	62153761	62153761	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaggtatgccctccttcaGagagcatgatgctagatgtt	12	8	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62153761	T	T	62153761	1	4	51	0	1	0	0	0	0	0	0	0	5579	957	33	3		3	FAM19A2	12	62153761	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4187450	62153761	71698134	383	55428											
USP15	9958	broad.mit.edu	37	chr12	62784975	62784975	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagatgatgaatccagcCaggatcaagaacttccctca	8	12	2	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62784975	T	T	62784975	4	4	51	1	0	0	0	0	0	1	0	0	17172	595	21	4	1970	4	USP15	12	62784975	Nonsense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	631214	62784975	71066920	384	55429											
OSBPL8	114882	broad.mit.edu	37	chr12	76780440	76780440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattttcttcaagagctgcCctaaaacacaaaacggtaaa	7	9	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76780440	A	A	76780440	3	1	51	1	0	0	0	0	1	0	0	0	11377	637	22	2	1364	2	OSBPL8	12	76780440	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	13995465	76780440	57071455	385	55430											
C12orf26	84190	broad.mit.edu	37	chr12	82824741	82824741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagatggtgctgtggtcGtaatgccagaatgtcagcat	14	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82824741	T	T	82824741	3	4	51	1	0	0	0	0	1	0	0	0	1692	1145	40	3	1371	3	C12orf26	12	82824741	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	6044301	82824741	51027154	386	55431											
CCDC41	51134	broad.mit.edu	37	chr12	94818041	94818041	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattccttggccaagcccgtCcattttgcacaaatattcct	5	14	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94818041	A	A	94818041	1	1	51	0	1	0	0	0	0	0	0	0	2840	870	30	3		3	CCDC41	12	94818041	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	11993300	94818041	39033854	387	55432											
USP44	84101	broad.mit.edu	37	chr12	95914952	95914952	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaacatgaacaccaatcTtctctcggttattacgtcct	5	13	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95914952	G	G	95914952	3	3	51	1	0	0	0	0	1	0	0	0	17202	1609	56	5	386	5	USP44	12	95914952	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1096911	95914952	37936943	388	55433											
UTP20	27340	broad.mit.edu	37	chr12	101679536	101679536	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccactcaggaaaattttAcaaagaagttattgacaaat	5	9	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101679536	G	G	101679536	3	3	51	1	0	0	0	0	1	0	0	0	17226	391	14	5	217	5	UTP20	12	101679536	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	5764584	101679536	32172359	389	55434											
NUP37	79023	broad.mit.edu	37	chr12	102512127	102512127	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcactgtcattcggtgcagTtttgtagactaacctgaaac	8	9	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102512127	C	C	102512127	1	2	51	0	1	0	0	0	0	0	0	0	10859	1740	60	5		5	NUP37	12	102512127	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	832591	102512127	31339768	390	55435											
NUP37	79023	broad.mit.edu	37	chr12	102512139	102512139	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtgcagttttgtagactaAcctgaaacgtacacgtgcca	10	10	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102512139	C	C	102512139	1	2	51	0	1	0	0	0	0	0	0	0	10859	57	2	5		5	NUP37	12	102512139	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	12	102512139	31339756	391	55436											
CKAP4	10970	broad.mit.edu	37	chr12	106633563	106633563	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcttctccgtgagggcctGcagggcgagccgctccgtgt	15	13	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106633563	A	A	106633563	4	1	51	1	0	0	0	0	0	1	0	0	3475	1328	46	4	764	4	CKAP4	12	106633563	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4121424	106633563	27218332	392	55437											
FOXN4	121643	broad.mit.edu	37	chr12	109723080	109723081	+	Intron	DEL	GC	-	-													gtgtgtgtgtgtgtgtgtgtGcgcgcactgcgggctgtccg					rs72228171		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109723081	-	-	109723080	6	5	51	0	1	1	0	1	0	0	0	0	6082	1334	46	0		0	FOXN4	12	109723080	Intron	DEL	GC	TCGA-17-Z018-01A-01W-0746-08	3089517	109723080	24128815	393	55438											
GCN1L1	10985	broad.mit.edu	37	chr12	120569844	120569844	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgacagggaagagaagGgagtgagggggtgcagggaa	21	4	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120569844	A	A	120569844	1	1	51	0	1	0	0	0	0	0	0	0	6361	1247	43	4		4	GCN1L1	12	120569844	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	10846764	120569844	13282051	394	55439											
TMEM132D	121256	broad.mit.edu	37	chr12	130231722	130231723	+	Intron	INS	-	CTCCTTCTCCCTCCTCCCG	CTCCTTCTCCCTCCTCCCG													ccgtcgcttgtccaatagctINSctccttctccctcctccctc					rs149346895	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTCCTTCTCCCTCCTCCCG	130231723	CTCCTTCTCCCTCCTCCCG	CTCCTTCTCCCTCCTCCCG	130231722	6	5	51	0	1	1	1	0	0	0	0	0	16170	1566	54	0		0	TMEM132D	12	130231722	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	9661878	130231722	3620173	395	55440											
RIMBP2	23504	broad.mit.edu	37	chr12	130926887	130926887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcctggtggcaccgccGggggctcccagcccacaata	11	18	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130926887	T	T	130926887	3	4	51	1	0	0	0	0	1	0	0	0	13472	1116	39	1	2247	1	RIMBP2	12	130926887	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	695165	130926887	2925008	396	55441											
ZNF268	10795	broad.mit.edu	37	chr12	133758615	133758615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccggacagcttctatttGggtgagtaggggttttcttt	14	6	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133758615	T	T	133758615	3	4	51	1	0	0	0	0	1	0	0	0	17933	1362	47	2	34	2	ZNF268	12	133758615	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2831728	133758615	93280	397	55442											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20222515	20222515	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctcaaataaatttacagTgtcaactctttatccattct	3	9	4	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20222515	A	A	20222515	1	1	51	0	1	0	0	0	0	0	0	0	9821	1711	59	5		5	MPHOSPH8	13	20222515	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08		20222515	94947363	398	55443											
WASF3	10810	broad.mit.edu	37	chr13	27239724	27239725	+	Intron	INS	-	A	A													ttcttaggattgatgcctgtINSaaaatcctggtgattctgct					rs150309212	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27239725	A	A	27239724	6	5	51	0	1	1	1	0	0	0	0	0	17381	1653	57	0		0	WASF3	13	27239724	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	7017209	27239724	87930154	399	55444											
MTUS2	23281	broad.mit.edu	37	chr13	29599481	29599481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctgggggtggggaggggCcacagaagacattgccagac	17	9	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599481	A	A	29599481	3	1	51	1	0	0	0	0	1	0	0	0	10060	739	26	3	678	3	MTUS2	13	29599481	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2359757	29599481	85570397	400	55445											
LHFP	10186	broad.mit.edu	37	chr13	40174995	40174995	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaactgaattcctccagccActcttcccactgtcctggag	7	15	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40174995	T	T	40174995	3	4	51	1	0	0	0	0	1	0	0	0	8835	159	6	5	255	5	LHFP	13	40174995	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	10575514	40174995	74994883	401	55446											
KIAA0564	23078	broad.mit.edu	37	chr13	42442349	42442349	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacatgactctggagacaTagacatatagataccgacag	8	10	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42442349	C	C	42442349	1	2	51	0	1	0	0	0	0	0	0	0	8255	1421	49	5		5	KIAA0564	13	42442349	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	2267354	42442349	72727529	402	55447											
EPSTI1	94240	broad.mit.edu	37	chr13	43500181	43500182	+	Intron	INS	-	AGGA	AGGA													tggaaggaaggaaggaaggaINSaggtaggaaggatggaagga							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGGA	43500182	AGGA	AGGA	43500181	6	5	51	0	1	1	1	0	0	0	0	0	5240	261	9	0		0	EPSTI1	13	43500181	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	1057832	43500181	71669697	403	55448											
MED4	29079	broad.mit.edu	37	chr13	48653923	48653923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccgccagatattccaacCttgtcatctctggaaaaccc	5	14	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48653923	A	A	48653923	1	1	51	0	1	0	0	0	0	0	0	0	9543	696	24	2		2	MED4	13	48653923	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5153742	48653923	66515955	404	55449											
PCDH17	27253	broad.mit.edu	37	chr13	58299215	58299215	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaccaagagaccctccCttcatggcttccgatcagat	7	14	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58299215	A	A	58299215	2	1	51	1	0	0	0	0	0	0	0	1	11606	668	24	2		2	PCDH17	13	58299215	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9645292	58299215	56870663	405	55450											
TBC1D4	9882	broad.mit.edu	37	chr13	75991382	75991382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacaactgccacttgccCtagacacgtcacctccttct	5	18	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75991382	A	A	75991382	1	1	51	0	1	0	0	0	0	0	0	0	15744	696	24	2		2	TBC1D4	13	75991382	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	17692167	75991382	39178496	406	55451											
EDNRB	1910	broad.mit.edu	37	chr13	78513106	78513108	+	Intron	DEL	CAC	-	-													tccccctatctgagtcacagCaccaaatttcatgcacgtca							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78513108	-	-	78513106	6	5	51	0	1	1	0	1	0	0	0	0	4960	725	25	0		0	EDNRB	13	78513106	Intron	DEL	CAC	TCGA-17-Z018-01A-01W-0746-08	2521724	78513106	36656772	407	55452											
ABCC4	10257	broad.mit.edu	37	chr13	95714858	95714859	+	Intron	INS	-	C	C													ctattgggtgaaaaaaaaaaINScaatcctttcatccaattaa					rs1751033	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95714859	C	C	95714858	6	5	51	0	1	1	1	0	0	0	0	0	55	58	2	0		0	ABCC4	13	95714858	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	17201752	95714858	19455020	408	55453											
ABCC4	10257	broad.mit.edu	37	chr13	95727523	95727523	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgattccgagaggagtccaaGcccagaagaaggggatgggg	17	8	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95727523	A	A	95727523	1	1	51	0	1	0	0	0	0	0	0	0	55	986	34	4		4	ABCC4	13	95727523	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	12665	95727523	19442355	409	55454											
DOCK9	23348	broad.mit.edu	37	chr13	99535354	99535354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagattcggttttctgaCagtactggaaaaaattatgt	8	7	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99535354	A	A	99535354	3	1	51	1	0	0	0	0	1	0	0	0	4734	478	17	3	3902	3	DOCK9	13	99535354	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3807831	99535354	15634524	410	55455											
UBAC2	337867	broad.mit.edu	37	chr13	99896102	99896102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagatttggaggttgatatGtggaagaataatttgccttg	12	3	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99896102	T	T	99896102	3	4	51	1	0	0	0	0	1	0	0	0	16961	1377	48	3	346	3	UBAC2	13	99896102	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	360748	99896102	15273776	411	55456											
ERCC5	2073	broad.mit.edu	37	chr13	103527867	103527867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaacccagaagagaGgcataacaaataccttagaa	8	7	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103527867	T	T	103527867	3	4	51	1	0	0	0	0	1	0	0	0	5258	1000	35	2	3233	2	ERCC5	13	103527867	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3631765	103527867	11642011	412	55457											
SLC10A2	6555	broad.mit.edu	37	chr13	103718580	103718580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgttgcattgtccacaCagctgttcggatcattcatt	7	10	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103718580	A	A	103718580	3	1	51	1	0	0	0	0	1	0	0	0	14487	478	17	3	1050	3	SLC10A2	13	103718580	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	190713	103718580	11451298	413	55458											
TMEM55B	90809	broad.mit.edu	37	chr14	20927364	20927364	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttggggcaagggtactcaCggcaaggccagtggcagtga	18	8	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20927364	A	A	20927364	5	1	51	1	0	0	0	0	0	0	1	0	16305	550	19	3	150	3	TMEM55B	14	20927364	Splice_Site	SNP	C	TCGA-17-Z018-01A-01W-0746-08		20927364	86422176	414	55459											
CHD8	57680	broad.mit.edu	37	chr14	21869215	21869215	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttcgtactctaggtgtgtCaattaccaaattattctatg	6	7	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21869215	A	A	21869215	3	1	51	1	0	0	0	0	1	0	0	0	3362	826	29	3	3624	3	CHD8	14	21869215	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	941851	21869215	85480325	415	55460											
MYH7	4625	broad.mit.edu	37	chr14	23884539	23884539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacacacttgctgcccaGcccacggagagacactggtc	9	17	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23884539	T	T	23884539	1	4	51	0	1	0	0	0	0	0	0	0	10133	986	34	3		3	MYH7	14	23884539	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2015324	23884539	83465001	416	55461											
HEATR5A	25938	broad.mit.edu	37	chr14	31782112	31782113	+	Intron	INS	-	AAAAG	AAAAG													gaccctgtcaaaaacaaaaaINSaaaagaaaagaaaatgtgtt					rs143793771	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAAAG	31782113	AAAAG	AAAAG	31782112	6	5	51	0	1	1	1	0	0	0	0	0	7098	29	1	0		0	HEATR5A	14	31782112	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	7897573	31782112	75567428	417	55462											
RAD51L1	5890	broad.mit.edu	37	chr14	68949778	68949779	+	Intron	DEL	AG	-	-													gagagagaagaaagtaagaaAgagagagagattgagcactg					rs10570973		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68949779	-	-	68949778	6	5	51	0	1	1	0	1	0	0	0	0	13097	87	3	0		0	RAD51L1	14	68949778	Intron	DEL	AG	TCGA-17-Z018-01A-01W-0746-08	37167666	68949778	38399762	418	55463											
SLC8A3	6547	broad.mit.edu	37	chr14	70633732	70633732	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctcaaaaatgtcgtcatCaattatgcccacggagaact	6	12	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70633732	A	A	70633732	3	1	51	1	0	0	0	0	1	0	0	0	14822	826	29	3	1514	3	SLC8A3	14	70633732	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1683954	70633732	36715808	419	55464											
C14orf145	145508	broad.mit.edu	37	chr14	81209334	81209334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatagtccaaaggggatgCaacagaagtaggtttttttc	11	5	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81209334	A	A	81209334	1	1	51	0	1	0	0	0	0	0	0	0	1762	725	25	3		3	C14orf145	14	81209334	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	10575602	81209334	26140206	420	55465											
FLRT2	23768	broad.mit.edu	37	chr14	86089394	86089394	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccatttgttcagaggcCaccacccatgcctcctatct	6	16	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86089394	A	A	86089394	2	1	51	1	0	0	0	0	0	0	0	1	5997	581	21	2		2	FLRT2	14	86089394	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4880060	86089394	21260146	421	55466											
TTC7B	145567	broad.mit.edu	37	chr14	91252704	91252704	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtgagaacaaagtgggagCaaggaatggcctgcatgtag	15	5	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91252704	G	G	91252704	1	3	51	0	1	0	0	0	0	0	0	0	16839	725	25	4		4	TTC7B	14	91252704	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5163310	91252704	16096836	422	55467											
SLC24A4	123041	broad.mit.edu	37	chr14	92949202	92949202	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtggctggtgagtgggggGagcagggggtggactgtgtg	25	3	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92949202	A	A	92949202	1	1	51	0	1	0	0	0	0	0	0	0	14582	1189	41	4		4	SLC24A4	14	92949202	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1696498	92949202	14400338	423	55468											
SERPINA5	5104	broad.mit.edu	37	chr14	95058481	95058481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcactttcaggtcggccCgcctgaactctcagaggcta	9	13	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95058481	A	A	95058481	3	1	51	1	0	0	0	0	1	0	0	0	14205	652	23	1	1140	1	SERPINA5	14	95058481	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2109279	95058481	12291059	424	55469											
BDKRB2	624	broad.mit.edu	37	chr14	96707170	96707170	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtccatgggccggatgCgcggcgtgcgctgggccaag	17	13	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96707170	T	T	96707170	3	4	51	1	0	0	0	0	1	0	0	0	1398	768	27	4	511	4	BDKRB2	14	96707170	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1648689	96707170	10642370	425	55470											
DIO3	1735	broad.mit.edu	37	chr14	102028007	102028007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcggcacggccttcatGctctggcttctcgatttctt	8	14	4	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102028007	T	T	102028007	3	4	51	1	0	0	0	0	1	0	0	0	4566	1319	46	3	176	3	DIO3	14	102028007	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5320837	102028007	5321533	426	55471											
DYNC1H1	1778	broad.mit.edu	37	chr14	102516551	102516551	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggtaaggaggcactgcCtttcccaggcattctgcagg	14	10	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102516551	G	G	102516551	1	3	51	0	1	0	0	0	0	0	0	0	4881	696	24	4		4	DYNC1H1	14	102516551	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	488544	102516551	4832989	427	55472											
AHNAK2	113146	broad.mit.edu	37	chr14	105409860	105409860	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagacaccccgaacgaCggcatcttgaacttgggcat	13	12	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105409860	T	T	105409860	2	4	51	1	0	0	0	0	0	0	0	1	415	523	19	4		4	AHNAK2	14	105409860	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2893309	105409860	1939680	428	55473											
CYFIP1	23191	broad.mit.edu	37	chr15	22929744	22929744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcgtttctgcggggaaGtgaggcgcctgtgccatgcc	16	10	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22929744	T	T	22929744	3	4	51	1	0	0	0	0	1	0	0	0	4170	1029	36	3	436	3	CYFIP1	15	22929744	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08		22929744	79601648	429	55474											
MKRN3	7681	broad.mit.edu	37	chr15	23811062	23811062	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggggaatctgctgctccaGattcagccctgccacatgcg	11	15	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23811062	T	T	23811062	3	4	51	1	0	0	0	0	1	0	0	0	9701	942	33	3	135	3	MKRN3	15	23811062	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	881318	23811062	78720330	430	55475											
GABRA5	2558	broad.mit.edu	37	chr15	27184976	27184976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaatgcttgtccaaacCgacaggggagtggaagggag	15	6	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27184976	A	A	27184976	1	1	51	0	1	0	0	0	0	0	0	0	6224	667	23	1		1	GABRA5	15	27184976	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3373914	27184976	75346416	431	55476											
OCA2	4948	broad.mit.edu	37	chr15	28171515	28171515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattgtcatactacaaaccGcatatatgtaaaatgcatat	4	7	1	0	rs143579167	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28171515	T	T	28171515	1	4	51	0	1	0	0	0	0	0	0	0	10910	1102	38	3		3	OCA2	15	28171515	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	986539	28171515	74359877	432	55477											
HERC2	8924	broad.mit.edu	37	chr15	28443559	28443559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactctgatgagtcacagatCcccatttgtattttggtgtg	9	9	2	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28443559	A	A	28443559	3	1	51	1	0	0	0	0	1	0	0	0	7125	855	30	3	6704	3	HERC2	15	28443559	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	272044	28443559	74087833	433	55478											
FAM189A1	23359	broad.mit.edu	37	chr15	29526830	29526830	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctagttttgatgcgtGtatcaaaccacctaccagtt	8	10	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29526830	A	A	29526830	1	1	51	0	1	0	0	0	0	0	0	0	5562	1392	48	4		4	FAM189A1	15	29526830	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1083271	29526830	73004562	434	55479											
VPS39	23339	broad.mit.edu	37	chr15	42454305	42454305	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcattttcttccaagacCttttccaggaagatgcgtat	8	9	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42454305	T	T	42454305	2	4	51	1	0	0	0	0	0	0	0	1	17336	680	24	4		4	VPS39	15	42454305	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	12927475	42454305	60077087	435	55480											
EPB42	2038	broad.mit.edu	37	chr15	43500962	43500962	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacgcgggcagggattcccaGgcatcgcagcactgtgagaa	14	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43500962	C	C	43500962	3	2	51	1	0	0	0	0	1	0	0	0	5200	991	35	4	1259	4	EPB42	15	43500962	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1046657	43500962	59030430	436	55481											
HDC	3067	broad.mit.edu	37	chr15	50545731	50545731	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatagagctggtttcaggtCcttgctttaggagacattta	10	8	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50545731	A	A	50545731	1	1	51	0	1	0	0	0	0	0	0	0	7082	870	30	3		3	HDC	15	50545731	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	7044769	50545731	51985661	437	55482											
BBS4	585	broad.mit.edu	37	chr15	73001918	73001918	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctataatatattattgtagtCagtagcatcaaaattttaat	4	4	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73001918	T	T	73001918	1	4	51	0	1	0	0	0	0	0	0	0	1344	841	29	4		4	BBS4	15	73001918	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	22456187	73001918	29529474	438	55483											
NEO1	4756	broad.mit.edu	37	chr15	73575342	73575342	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagccccacctctcctctGgacagtaatatgctgctggt	11	13	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73575342	T	T	73575342	2	4	51	1	0	0	0	0	0	0	0	1	10431	1335	47	2		2	NEO1	15	73575342	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	573424	73575342	28956050	439	55484											
ZNF592	9640	broad.mit.edu	37	chr15	85326375	85326375	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcccatcaaagataacGgatttgggataaagcccaaa	9	8	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85326375	T	T	85326375	4	4	51	1	0	0	0	0	0	1	0	0	18149	1117	39	1	471	1	ZNF592	15	85326375	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	11751033	85326375	17205017	440	55485											
POLG	5428	broad.mit.edu	37	chr15	89868839	89868839	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatgagtttaggtgtgacCcgcatctgcaggctgaggag	15	9	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89868839	A	A	89868839	2	1	51	1	0	0	0	0	0	0	0	1	12295	610	22	2		2	POLG	15	89868839	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4542464	89868839	12662553	441	55486											
LRRK1	79705	broad.mit.edu	37	chr15	101596965	101596965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaatgtttgttttccttGtctaattgtgtctccctggt	9	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101596965	T	T	101596965	1	4	51	0	1	0	0	0	0	0	0	0	9119	1392	48	3		3	LRRK1	15	101596965	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	11728126	101596965	934427	442	55487											
A2BP1	54715	broad.mit.edu	37	chr16	7380510	7380511	+	Intron	DEL	TT	-	-													tgtgtgtgtgtgtgtgtgtgTttgtgtgtgtgtgtgtagag					rs59025287		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7380511	-	-	7380510	6	5	51	0	1	1	0	1	0	0	0	0	3	1740	60	0		0	A2BP1	16	7380510	Intron	DEL	TT	TCGA-17-Z018-01A-01W-0746-08		7380510	82974243	443	55488											
GRIN2A	2903	broad.mit.edu	37	chr16	10049098	10049098	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtcttgtcacagatcaCagcctccccaccttgctttc	6	15	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10049098	T	T	10049098	1	4	51	0	1	0	0	0	0	0	0	0	6845	493	17	4		4	GRIN2A	16	10049098	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2668588	10049098	80305655	444	55489											
POLR3E	55718	broad.mit.edu	37	chr16	22330235	22330235	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggggcatccagaaggtggcGatgttggtccaagggaactg	17	8	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22330235	T	T	22330235	2	4	51	1	0	0	0	0	0	0	0	1	12327	1045	37	3		3	POLR3E	16	22330235	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	12281137	22330235	68024518	445	55490											
HS3ST4	9951	broad.mit.edu	37	chr16	25884798	25884801	+	Intron	DEL	TCTC	-	-													tttacccacccatccatctaTctctctatctatctatctat					rs66595275	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25884801	-	-	25884798	6	5	51	0	1	1	0	1	0	0	0	0	7434	1450	50	0		0	HS3ST4	16	25884798	Intron	DEL	TCTC	TCGA-17-Z018-01A-01W-0746-08	3554563	25884798	64469955	446	55491											
HS3ST4	9951	broad.mit.edu	37	chr16	26044201	26044201	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtggcgcgcgggctttggtCggtctgggggtcgttctcgc	19	10	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26044201	A	A	26044201	1	1	51	0	1	0	0	0	0	0	0	0	7434	899	31	3		3	HS3ST4	16	26044201	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	159403	26044201	64310552	447	55492											
ITGAX	3687	broad.mit.edu	37	chr16	31393054	31393054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaatagtgacccctctcCctcagtcatctcttttcctc	4	16	4	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31393054	A	A	31393054	1	1	51	0	1	0	0	0	0	0	0	0	7959	638	22	2		2	ITGAX	16	31393054	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5348853	31393054	58961699	448	55493											
MYLK3	91807	broad.mit.edu	37	chr16	46766215	46766215	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtcctgctcaggctcaGggtttcccgcccctgggctt	11	16	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46766215	A	A	46766215	3	1	51	1	0	0	0	0	1	0	0	0	10152	1000	35	4	1132	4	MYLK3	16	46766215	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	15373161	46766215	43588538	449	55494											
CES7	221223	broad.mit.edu	37	chr16	55890527	55890527	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttgtcagatagttaatttCttctcacttttgataaaagg	7	6	3	2	rs74782302	byFrequency;by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890527	T	T	55890527	1	4	51	0	1	0	0	0	0	0	0	0	3302	928	32	4		4	CES7	16	55890527	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9124312	55890527	34464226	450	55495											
EDC4	23644	broad.mit.edu	37	chr16	67911567	67911567	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgaagaccgggtgagggGgctgacatggcgaagaggcg	20	7	0	5			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67911567	A	A	67911567	1	1	51	0	1	0	0	0	0	0	0	0	4948	1247	43	4		4	EDC4	16	67911567	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	12021040	67911567	22443186	451	55496											
WWOX	51741	broad.mit.edu	37	chr16	78459050	78459050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataattttcattagtcctGcttgagacatgtgggtggac	10	6	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78459050	T	T	78459050	1	4	51	0	1	0	0	0	0	0	0	0	17541	1334	46	3		3	WWOX	16	78459050	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	10547483	78459050	11895703	452	55497											
LRRC50	123872	broad.mit.edu	37	chr16	84203521	84203521	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgccagtgcggaaggcaagGaggagcctcccggggacaga	17	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84203521	T	T	84203521	4	4	51	1	0	0	0	0	0	1	0	0	9096	1175	41	3	1117	3	LRRC50	16	84203521	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5744471	84203521	6151232	453	55498											
ENO3	2027	broad.mit.edu	37	chr17	4859168	4859178	+	Intron	DEL	CTGTCTCTGCC	-	-													gtctctgccctgtctctgctCtgtctctgccctgtctctgc							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4859178	-	-	4859168	6	5	51	0	1	1	0	1	0	0	0	0	5165	928	32	0		0	ENO3	17	4859168	Intron	DEL	CTGTCTCTGCC	TCGA-17-Z018-01A-01W-0746-08		4859168	76336042	454	55499											
DNAH9	1770	broad.mit.edu	37	chr17	11684547	11684547	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagagcctaaggcagggcTgaaggccagtctctattctg	13	10	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11684547	G	G	11684547	1	3	51	0	1	0	0	0	0	0	0	0	4648	1595	55	5		5	DNAH9	17	11684547	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	6825379	11684547	69510663	455	55500											
DNAH9	1770	broad.mit.edu	37	chr17	11790374	11790374	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagcttatccatgtaagatCattagctatggcaagtctgt	9	7	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11790374	A	A	11790374	1	1	51	0	1	0	0	0	0	0	0	0	4648	841	29	3		3	DNAH9	17	11790374	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	105827	11790374	69404836	456	55501											
DNAH9	1770	broad.mit.edu	37	chr17	11840709	11840709	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagaatccccctacctctAtggcctccacccgaacgcag	6	20	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11840709	G	G	11840709	3	3	51	1	0	0	0	0	1	0	0	0	4648	449	16	5	12792	5	DNAH9	17	11840709	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	50335	11840709	69354501	457	55502											
KSR1	8844	broad.mit.edu	37	chr17	25919562	25919562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtaactcggcttcggagGacagaatctgtcccctcgga	11	12	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25919562	T	T	25919562	3	4	51	1	0	0	0	0	1	0	0	0	8653	1165	41	3	820	3	KSR1	17	25919562	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	14078853	25919562	55275648	458	55503											
VTN	7448	broad.mit.edu	37	chr17	26697216	26697216	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatgagaaggggtctcagGggtgccatggcagggcttct	17	7	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26697216	T	T	26697216	2	4	51	1	0	0	0	0	0	0	0	1	17364	1219	43	2		2	VTN	17	26697216	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	777654	26697216	54497994	459	55504											
ACCN1	40	broad.mit.edu	37	chr17	31676334	31676334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgagggttgaattctgCttataacaccactgcttgtg	11	7	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31676334	A	A	31676334	1	1	51	0	1	0	0	0	0	0	0	0	128	812	28	3		3	ACCN1	17	31676334	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4979118	31676334	49518876	460	55505											
CCL11	6356	broad.mit.edu	37	chr17	32614718	32614718	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagccataaataatcacCatttttgaaaccaaaccaga	3	11	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32614718	A	A	32614718	1	1	51	0	1	0	0	0	0	0	0	0	2911	609	21	2		2	CCL11	17	32614718	3'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	938384	32614718	48580492	461	55506											
NLE1	54475	broad.mit.edu	37	chr17	33463440	33463440	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggttcaaaggccccagtgCgcagggcatagtcagtgctg	14	11	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33463440	T	T	33463440	3	4	51	1	0	0	0	0	1	0	0	0	10555	768	27	4	576	4	NLE1	17	33463440	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	848722	33463440	47731770	462	55507											
SLFN5	162394	broad.mit.edu	37	chr17	33591957	33591957	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgttcactttattttcttGagtgactgtggctggtgtgg	13	5	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33591957	T	T	33591957	1	4	51	0	1	0	0	0	0	0	0	0	14851	1305	45	3		3	SLFN5	17	33591957	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	128517	33591957	47603253	463	55508											
ACACA	31	broad.mit.edu	37	chr17	35634089	35634089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtctctatccaggctggcCctgtttcttgaggtacagta	11	10	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35634089	A	A	35634089	1	1	51	0	1	0	0	0	0	0	0	0	106	638	22	2		2	ACACA	17	35634089	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2042132	35634089	45561121	464	55509											
KRTAP9-8	83901	broad.mit.edu	37	chr17	39394381	39394381	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcccaccactgtgaccacCtgcagcagcacaccctgctg	8	18	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39394381	A	A	39394381	2	1	51	1	0	0	0	0	0	0	0	1	8648	668	24	2		2	KRTAP9-8	17	39394381	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3760292	39394381	41800829	465	55510											
NBR1	4077	broad.mit.edu	37	chr17	41341942	41341942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcattagatgttgtagctGtgagttggaagcacaagcta	13	5	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41341942	T	T	41341942	1	4	51	0	1	0	0	0	0	0	0	0	10295	1392	48	3		3	NBR1	17	41341942	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1947561	41341942	39853268	466	55511											
EFTUD2	9343	broad.mit.edu	37	chr17	42931994	42931994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaaagcccagatggaaCgggcagccagcagatcccaa	12	13	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42931994	T	T	42931994	3	4	51	1	0	0	0	0	1	0	0	0	5001	536	19	4	757	4	EFTUD2	17	42931994	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1590052	42931994	38263216	467	55512											
SKAP1	8631	broad.mit.edu	37	chr17	46214542	46214542	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaaacaaagtagtggcccAcaagttccactcaactatta	7	10	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46214542	T	T	46214542	1	4	51	0	1	0	0	0	0	0	0	0	14468	174	6	5		5	SKAP1	17	46214542	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	3282548	46214542	34980668	468	55513											
ABCC3	8714	broad.mit.edu	37	chr17	48734260	48734260	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactgtgatagggaaactgTgggctctgaggagagggctg	19	5	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48734260	G	G	48734260	1	3	51	0	1	0	0	0	0	0	0	0	54	1711	59	5		5	ABCC3	17	48734260	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	2519718	48734260	32460950	469	55514											
SEPT4	5414	broad.mit.edu	37	chr17	56598179	56598180	+	Missense_Mutation	DNP	GG	TT	TT													acagcagggatggggaagtcGgtaccactttcccgagtcag							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	56598180	TT	TT	56598179	3	4	51	1	0	0	0	0	1	0	0	0	14179	1103	39	1	142	1	SEPT4	17	56598179	Missense_Mutation	DNP	GG	TCGA-17-Z018-01A-01W-0746-08	7863919	56598179	24597031	470	55515											
TACO1	51204	broad.mit.edu	37	chr17	61683704	61683704	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttatttgctgtatgaggGtcgaggccctggtggctctt	13	9	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61683704	A	A	61683704	3	1	51	1	0	0	0	0	1	0	0	0	15623	1261	44	4	429	4	TACO1	17	61683704	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5085525	61683704	19511506	471	55516											
CCDC46	201134	broad.mit.edu	37	chr17	63746794	63746794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttacctgtgaagatttggCaagcttctgagtgtattcct	10	8	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63746794	A	A	63746794	3	1	51	1	0	0	0	0	1	0	0	0	2845	710	25	3	448	3	CCDC46	17	63746794	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2063090	63746794	17448416	472	55517											
NOL11	25926	broad.mit.edu	37	chr17	65717512	65717512	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttgtcagcagaagtatatAggatactttcagtgcaaggg	12	5	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65717512	T	T	65717512	3	4	51	1	0	0	0	0	1	0	0	0	10616	411	15	5	345	5	NOL11	17	65717512	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1970718	65717512	15477698	473	55518											
SDK2	54549	broad.mit.edu	37	chr17	71334924	71334924	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgtggtctggctcaccCgagtcgctctccgtgtagct	14	12	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71334924	A	A	71334924	2	1	51	1	0	0	0	0	0	0	0	1	14082	639	23	1		1	SDK2	17	71334924	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5617412	71334924	9860286	474	55519											
DSC3	1825	broad.mit.edu	37	chr18	28588512	28588512	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaaataaagtccatgtAtatcagtgtcagtgtaaaat	6	5	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28588512	T	T	28588512	1	4	51	0	1	0	0	0	0	0	0	0	4807	464	16	5		5	DSC3	18	28588512	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08		28588512	49488736	475	55520											
DSG3	1830	broad.mit.edu	37	chr18	29055744	29055744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagttttattgctgatgacCtggatgacagcttcttggac	11	8	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29055744	A	A	29055744	3	1	51	1	0	0	0	0	1	0	0	0	4818	680	24	2	2583	2	DSG3	18	29055744	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	467232	29055744	49021504	476	55521											
ASXL3	80816	broad.mit.edu	37	chr18	31324235	31324235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattccgtgtaaagtcatcGttgaccacagcaccacgctg	8	13	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31324235	T	T	31324235	3	4	51	1	0	0	0	0	1	0	0	0	1072	1145	40	3	4469	3	ASXL3	18	31324235	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2268491	31324235	46753013	477	55522											
SIGLEC15	284266	broad.mit.edu	37	chr18	43405779	43405779	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actctctctggcccatgctcGggacagaatagatgctgaaa	10	11	2	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43405779	C	C	43405779	1	2	51	0	1	0	0	0	0	0	0	0	14423	1131	39	4		4	SIGLEC15	18	43405779	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	12081544	43405779	34671469	478	55523											
PSTPIP2	9050	broad.mit.edu	37	chr18	43609177	43609177	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaattcctgtgcatcaagTgagaggtttgaaagaagata	10	4	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43609177	C	C	43609177	1	2	51	0	1	0	0	0	0	0	0	0	12828	1711	59	5		5	PSTPIP2	18	43609177	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	203398	43609177	34468071	479	55524											
RNF165	494470	broad.mit.edu	37	chr18	44030176	44030176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcagggtgtactgagtgGgttacaggtggagaagttgc	16	5	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44030176	T	T	44030176	1	4	51	0	1	0	0	0	0	0	0	0	13567	1247	43	2		2	RNF165	18	44030176	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	420999	44030176	34047072	480	55525											
ST8SIA5	29906	broad.mit.edu	37	chr18	44284556	44284571	+	Frame_Shift_Del	DEL	AATATTTCGTGCCTCA	-	-													tggacagcaccttcacttccAatatttcgtgcctcagctcc					rs146980909		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44284571	-	-	44284556	7	5	51	1	0	1	0	1	0	0	0	0	15353	131	5	0	951	0	ST8SIA5	18	44284556	Frame_Shift_Del	DEL	AATATTTCGTGCCTCA	TCGA-17-Z018-01A-01W-0746-08	254380	44284556	33792692	481	55526											
ZBTB7C	201501	broad.mit.edu	37	chr18	45566337	45566337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtatgggtcctcatgtgcCgcggcagcttcccggccccc	13	17	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45566337	A	A	45566337	3	1	51	1	0	0	0	0	1	0	0	0	17681	652	23	1	725	1	ZBTB7C	18	45566337	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1281781	45566337	32510911	482	55527											
KIAA0427	9811	broad.mit.edu	37	chr18	46062646	46062647	+	5'Flank	DNP	CT	AG	AG													gcaatgcaaagccccaggcaCtgcccagaggaggcagcatt							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	46062647	AG	AG	46062646	1	1	51	0	1	0	0	0	0	0	0	0	8246	580	20	3		3	KIAA0427	18	46062646	5'Flank	DNP	CT	TCGA-17-Z018-01A-01W-0746-08	496309	46062646	32014602	483	55528											
MEX3C	51320	broad.mit.edu	37	chr18	48703218	48703218	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagtcaaaggcaggagagtCaactgctaggtcttctgagc	13	8	4	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48703218	T	T	48703218	3	4	51	1	0	0	0	0	1	0	0	0	9604	826	29	4	500	4	MEX3C	18	48703218	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2640572	48703218	29374030	484	55529											
DCC	1630	broad.mit.edu	37	chr18	50319210	50319210	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctattccattctattccAttccattccattccattcgg	2	13	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50319210	G	G	50319210	1	3	51	0	1	0	0	0	0	0	0	0	4315	232	8	5		5	DCC	18	50319210	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1615992	50319210	27758038	485	55530											
FECH	2235	broad.mit.edu	37	chr18	55221585	55221585	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcggaaccaagaggatattCttcctccccctctcacaaag	6	14	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55221585	A	A	55221585	3	1	51	1	0	0	0	0	1	0	0	0	5865	912	32	3	299	3	FECH	18	55221585	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4902375	55221585	22855663	486	55531											
SOCS6	9306	broad.mit.edu	37	chr18	67992072	67992072	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatatggccagctgcgatatCaacggtgaagatgaaaaagg	13	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67992072	A	A	67992072	2	1	51	1	0	0	0	0	0	0	0	1	15032	816	29	3		3	SOCS6	18	67992072	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	12770487	67992072	10085176	487	55532											
ADNP2	22850	broad.mit.edu	37	chr18	77895267	77895267	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatggccggttccatgccCggcatgccctctcctccagt	9	18	1	0	rs141229292		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77895267	T	T	77895267	2	4	51	1	0	0	0	0	0	0	0	1	324	639	23	4		4	ADNP2	18	77895267	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	9903195	77895267	181981	488	55533											
CD209	30835	broad.mit.edu	37	chr19	7810117	7810117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattcccctccccacttccCgagaccctcccccatcccca	2	26	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7810117	A	A	7810117	1	1	51	0	1	0	0	0	0	0	0	0	3014	667	23	1		1	CD209	19	7810117	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08		7810117	51318866	489	55534											
MUC16	94025	broad.mit.edu	37	chr19	9000568	9000568	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaggagagggctggcggcTatagtgaagatgggaaataa	16	5	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9000568	A	A	9000568	5	1	51	1	0	0	0	0	0	0	1	0	10067	1536	53	5	3231	5	MUC16	19	9000568	Splice_Site	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1190451	9000568	50128415	490	55535											
COL5A3	50509	broad.mit.edu	37	chr19	10100096	10100097	+	Intron	DNP	CC	AA	AA													aaaacttgccattccaattcCcaaggctcccctttctcctt							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	10100097	AA	AA	10100096	1	1	51	0	1	0	0	0	0	0	0	0	3730	638	22	2		2	COL5A3	19	10100096	Intron	DNP	CC	TCGA-17-Z018-01A-01W-0746-08	1099528	10100096	49028887	491	55536											
KEAP1	9817	broad.mit.edu	37	chr19	10610244	10610244	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacatgacagcaccgttcaTgacgtggaggacacacttct	10	11	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10610244	C	C	10610244	3	2	51	1	0	0	0	0	1	0	0	0	8211	1464	51	5	1428	5	KEAP1	19	10610244	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	510148	10610244	48518739	492	55537											
SMARCA4	6597	broad.mit.edu	37	chr19	11144075	11144075	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagatcctagctgcagccaAgtacaagctcaacgtggacc	10	12	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11144075	T	T	11144075	3	4	51	1	0	0	0	0	1	0	0	0	14884	72	3	5	3754	5	SMARCA4	19	11144075	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	533831	11144075	47984908	493	55538											
ZNF44	51710	broad.mit.edu	37	chr19	12386639	12386639	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacatacaacaggttggggCctggcacttcaccctgtgtt	12	11	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12386639	G	G	12386639	1	3	51	0	1	0	0	0	0	0	0	0	18039	754	26	4		4	ZNF44	19	12386639	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1242564	12386639	46742344	494	55539											
WIZ	58525	broad.mit.edu	37	chr19	15538418	15538418	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgcaggagtgtcctggtCggctgggcgtgggcggcagc	19	11	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15538418	A	A	15538418	1	1	51	0	1	0	0	0	0	0	0	0	17502	899	31	3		3	WIZ	19	15538418	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3151779	15538418	43590565	495	55540											
CYP4F22	126410	broad.mit.edu	37	chr19	15658804	15658823	+	Intron	DEL	GAGGGAGAGAGTGTGTGTGT	-	-													gagagagagagagagagagaGagggagagagtgtgtgtgtg					rs36213762		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15658823	-	-	15658804	6	5	51	0	1	1	0	1	0	0	0	0	4222	957	33	0		0	CYP4F22	19	15658804	Intron	DEL	GAGGGAGAGAGTGTGTGTGT	TCGA-17-Z018-01A-01W-0746-08	120386	15658804	43470179	496	55541											
ZNF257	113835	broad.mit.edu	37	chr19	22270766	22270766	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggagtaatttgttgtttTtatttcttttagttatgtgt	9	1	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22270766	A	A	22270766	1	1	51	0	1	0	0	0	0	0	0	0	17926	1856	64	5		5	ZNF257	19	22270766	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	6611962	22270766	36858217	497	55542											
ZNF681	148213	broad.mit.edu	37	chr19	23938224	23938224	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtatattgaagttatcctCacccaagaagaccaggtttc	7	9	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23938224	G	G	23938224	1	3	51	0	1	0	0	0	0	0	0	0	18215	841	29	4		4	ZNF681	19	23938224	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1667458	23938224	35190759	498	55543											
ZNF507	22847	broad.mit.edu	37	chr19	32845048	32845048	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagattgggcgcgaaggaAtggatgatgtttatcgtgct	14	6	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32845048	G	G	32845048	3	3	51	1	0	0	0	0	1	0	0	0	18080	101	4	5	1314	5	ZNF507	19	32845048	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	8906824	32845048	26283935	499	55544											
ZNF569	148266	broad.mit.edu	37	chr19	37917123	37917123	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaggtactttctttccaGagtttgaattatatagtaaa	6	4	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37917123	T	T	37917123	1	4	51	0	1	0	0	0	0	0	0	0	18127	957	33	3		3	ZNF569	19	37917123	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5072075	37917123	21211860	500	55545											
ADCK4	79934	broad.mit.edu	37	chr19	41209671	41209671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcaggccctggtgcacCtgcccaattgaggcagcggc	13	15	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41209671	A	A	41209671	3	1	51	1	0	0	0	0	1	0	0	0	290	680	24	2	1000	2	ADCK4	19	41209671	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3292548	41209671	17919312	501	55546											
CEACAM4	1089	broad.mit.edu	37	chr19	42126009	42126009	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcctgggtcccctggagcCtgcgggaccagaacatccat	12	14	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42126009	T	T	42126009	1	4	51	0	1	0	0	0	0	0	0	0	3224	696	24	4		4	CEACAM4	19	42126009	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	916338	42126009	17002974	502	55547											
ATP1A3	478	broad.mit.edu	37	chr19	42474301	42474301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgctctaggcccggcaCtgggtggtaaggagatggag	17	9	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42474301	A	A	42474301	1	1	51	0	1	0	0	0	0	0	0	0	1134	580	20	3		3	ATP1A3	19	42474301	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	348292	42474301	16654682	503	55548											
PSG1	5669	broad.mit.edu	37	chr19	43371376	43371376	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggtatactacagtttttAttttccacataatttttccc	3	9	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43371376	C	C	43371376	1	2	51	0	1	0	0	0	0	0	0	0	12759	464	16	5		5	PSG1	19	43371376	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	897075	43371376	15757607	504	55549											
PSG6	5675	broad.mit.edu	37	chr19	43539894	43539894	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaggaggaggagatccAgtcccagatatgggcaaaga	17	6	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43539894	T	T	43539894	1	4	51	0	1	0	0	0	0	0	0	0	12765	203	7	5		5	PSG6	19	43539894	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	168518	43539894	15589089	505	55550											
PSG9	5678	broad.mit.edu	37	chr19	43770582	43770582	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcattatgtgagagctccTgagtgtgtgtctctcgctgg	12	8	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43770582	A	A	43770582	1	1	51	0	1	0	0	0	0	0	0	0	12768	1595	55	5		5	PSG9	19	43770582	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	230688	43770582	15358401	506	55551											
CD177	57126	broad.mit.edu	37	chr19	43859868	43859868	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggaaggctgtctggagggGacaacagaagagatctgccc	15	8	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43859868	T	T	43859868	2	4	51	1	0	0	0	0	0	0	0	1	3001	1161	41	3		3	CD177	19	43859868	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	89286	43859868	15269115	507	55552											
KCNN4	3783	broad.mit.edu	37	chr19	44281477	44281478	+	Intron	DEL	GG	-	-													gtgtgtgtgtgtgtgtgtgtGggtgtgtgtgtgtggtgtct					rs72282703		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44281478	-	-	44281477	6	5	51	0	1	1	0	1	0	0	0	0	8151	1363	47	0		0	KCNN4	19	44281477	Intron	DEL	GG	TCGA-17-Z018-01A-01W-0746-08	421609	44281477	14847506	508	55553											
ZNF234	10780	broad.mit.edu	37	chr19	44652983	44652983	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggagctggggctgctGgaccctgtccagaggaatct	17	9	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44652983	T	T	44652983	2	4	51	1	0	0	0	0	0	0	0	1	17913	1335	47	2		2	ZNF234	19	44652983	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	371506	44652983	14476000	509	55554											
CEACAM20	125931	broad.mit.edu	37	chr19	45024466	45024466	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaacttaaagagaaggaggGaagcagggagatggggaagg	19	2	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45024466	T	T	45024466	1	4	51	0	1	0	0	0	0	0	0	0	3221	1189	41	3		3	CEACAM20	19	45024466	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	371483	45024466	14104517	510	55555											
PRKD2	25865	broad.mit.edu	37	chr19	47181713	47181713	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcggcgttctggatctGgtcattgatgtcctcatcct	12	10	4	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47181713	A	A	47181713	4	1	51	1	0	0	0	0	0	1	0	0	12625	1357	47	4	370	4	PRKD2	19	47181713	Nonsense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2157247	47181713	11947270	511	55556											
ELSPBP1	64100	broad.mit.edu	37	chr19	48519714	48519729	+	Intron	DEL	TTTCTTTCCTTCTTTC	-	-													tccctcccttttctctttctTttctttccttctttctttct					rs112170164	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48519729	-	-	48519714	6	5	51	0	1	1	0	1	0	0	0	0	5125	1856	64	0		0	ELSPBP1	19	48519714	Intron	DEL	TTTCTTTCCTTCTTTC	TCGA-17-Z018-01A-01W-0746-08	1338001	48519714	10609269	512	55557											
RUVBL2	10856	broad.mit.edu	37	chr19	49510571	49510571	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggctagggaggagacggaGatcatcgaaggggaggtggt	20	5	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49510571	C	C	49510571	3	2	51	1	0	0	0	0	1	0	0	0	13864	933	33	4	430	4	RUVBL2	19	49510571	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	990857	49510571	9618412	513	55558											
IL4I1	259307	broad.mit.edu	37	chr19	50392964	50392964	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgggtcgtgttttggagaGataactggccttggactgga	16	5	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50392964	C	C	50392964	3	2	51	1	0	0	0	0	1	0	0	0	7767	942	33	4	40	4	IL4I1	19	50392964	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	882393	50392964	8736019	514	55559											
CD33	945	broad.mit.edu	37	chr19	51729384	51729384	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctgagggtgtaggggagAcaggatgggctggtgctggg	21	6	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51729384	T	T	51729384	1	4	51	0	1	0	0	0	0	0	0	0	3035	290	10	5		5	CD33	19	51729384	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1336420	51729384	7399599	515	55560											
LIM2	3982	broad.mit.edu	37	chr19	51890699	51890699	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacccatgaagctgtacatgGtgatctgtggggaaggggag	16	7	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51890699	C	C	51890699	1	2	51	0	1	0	0	0	0	0	0	0	8867	1276	44	4		4	LIM2	19	51890699	5'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	161315	51890699	7238284	516	55561											
LILRA1	11024	broad.mit.edu	37	chr19	55105822	55105822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctagtccctaaggagaCcccaggggctcacaaagatc	9	14	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55105822	A	A	55105822	1	1	51	0	1	0	0	0	0	0	0	0	8856	522	18	3		3	LILRA1	19	55105822	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3215123	55105822	4023161	517	55562											
LILRA1	11024	broad.mit.edu	37	chr19	55106759	55106759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggccatcttctctgtgGgccccgtgagcccgagtcgc	13	17	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55106759	T	T	55106759	3	4	51	1	0	0	0	0	1	0	0	0	8856	1232	43	2	567	2	LILRA1	19	55106759	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	937	55106759	4022224	518	55563											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272037	55272037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtaggttctctgcagggcCcaaggtcaacggaacattcc	11	12	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55272037	A	A	55272037	1	1	51	0	1	0	0	0	0	0	0	0	8388	638	22	2		2	KIR2DL3	19	55272037	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	165278	55272037	3856946	519	55564											
KIR2DL1	3802	broad.mit.edu	37	chr19	55282330	55282330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcagggggcctggccaCatgagggtgagtccttctcc	15	12	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55282330	A	A	55282330	3	1	51	1	0	0	0	0	1	0	0	0	8387	478	17	3	70	3	KIR2DL1	19	55282330	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	10293	55282330	3846653	520	55565											
KIR3DL1	3811	broad.mit.edu	37	chr19	55330201	55330201	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggggaaatgggtgctgtGgtgggaagaatcactgtccc	16	7	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55330201	T	T	55330201	1	4	51	0	1	0	0	0	0	0	0	0	8391	1363	47	2		2	KIR3DL1	19	55330201	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	47871	55330201	3798782	521	55566											
C19orf51	352909	broad.mit.edu	37	chr19	55677335	55677335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcggggttgctgtgcactGtatcggcctgggagtctggg	18	9	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55677335	T	T	55677335	3	4	51	1	0	0	0	0	1	0	0	0	1952	1377	48	3	1546	3	C19orf51	19	55677335	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	347134	55677335	3451648	522	55567											
PTPRH	5794	broad.mit.edu	37	chr19	55718234	55718234	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacccagtagttggagttctGtgagtctaggccatcgggga	14	8	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55718234	C	C	55718234	3	2	51	1	0	0	0	0	1	0	0	0	12911	1386	48	4	3244	4	PTPRH	19	55718234	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	40899	55718234	3410749	523	55568											
ZNF835	90485	broad.mit.edu	37	chr19	57175665	57175665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtagggcttctcgcccGtgtgcacgcgccggtgctgg	16	13	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57175665	T	T	57175665	3	4	51	1	0	0	0	0	1	0	0	0	18315	1145	40	3	713	3	ZNF835	19	57175665	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1457431	57175665	1953318	524	55569											
PEG3	5178	broad.mit.edu	37	chr19	57333080	57333080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtccatttcaaagcttGttttcgccaccacaggaagg	8	12	2	0	rs145933493	byFrequency	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57333080	T	T	57333080	3	4	51	1	0	0	0	0	1	0	0	0	11814	1377	48	3	4177	3	PEG3	19	57333080	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	157415	57333080	1795903	525	55570											
DUXA	503835	broad.mit.edu	37	chr19	57670677	57670677	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaaaggagagaattaCgtgttaatgtcatttaagct	9	3	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57670677	G	G	57670677	1	3	51	0	1	0	0	0	0	0	0	0	4874	551	19	4		4	DUXA	19	57670677	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	337597	57670677	1458306	526	55571											
ZNF776	284309	broad.mit.edu	37	chr19	58265121	58265121	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagggtggaaaaactcattAcatctgtggagagtccacaa	10	8	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58265121	G	G	58265121	3	3	51	1	0	0	0	0	1	0	0	0	18278	391	14	5	633	5	ZNF776	19	58265121	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	594444	58265121	863862	527	55572											
ZNF587	84914	broad.mit.edu	37	chr19	58322236	58322236	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactgagataggagaaaacCgccttagggctggaggtgag	15	6	0	3	rs78368959		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58322236	T	T	58322236	1	4	51	0	1	0	0	0	0	0	0	0	18147	667	23	4		4	ZNF587	19	58322236	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	57115	58322236	806747	528	55573											
ZNF587	84914	broad.mit.edu	37	chr19	58337760	58337760	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catatggattcatgcgcacgCgtctggaggcaccagatccc	11	13	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58337760	T	T	58337760	1	4	51	0	1	0	0	0	0	0	0	0	18147	783	27	4		4	ZNF587	19	58337760	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	15524	58337760	791223	529	55574											
C20orf196	149840	broad.mit.edu	37	chr20	5844057	5844057	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagccaaacccaggactgtCaaaggatattactcatttcc	6	11	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5844057	T	T	5844057	3	4	51	1	0	0	0	0	1	0	0	0	2123	838	29	4	572	4	C20orf196	20	5844057	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08		5844057	57181463	530	55575											
PLCB1	23236	broad.mit.edu	37	chr20	8628575	8628575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacttaagctgcaagtcactCcagaagggcgtattcctctc	8	12	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8628575	A	A	8628575	3	1	51	1	0	0	0	0	1	0	0	0	12122	855	30	3	515	3	PLCB1	20	8628575	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2784518	8628575	54396945	531	55576											
C20orf103	24141	broad.mit.edu	37	chr20	9510545	9510545	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaagcacttttccatcttGtacacgagatacaccaacat	4	12	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9510545	C	C	9510545	1	2	51	0	1	0	0	0	0	0	0	0	2097	1392	48	4		4	C20orf103	20	9510545	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	881970	9510545	53514975	532	55577											
PAK7	57144	broad.mit.edu	37	chr20	9523408	9523408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatctcaggcaaggagaaCattctgaaatgtcaagtgtg	11	6	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9523408	A	A	9523408	1	1	51	0	1	0	0	0	0	0	0	0	11499	493	17	3		3	PAK7	20	9523408	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	12863	9523408	53502112	533	55578											
ESF1	51575	broad.mit.edu	37	chr20	13714431	13714431	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaattgttcccaaggggtCagtttatcctttccttccaa	6	10	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13714431	A	A	13714431	2	1	51	1	0	0	0	0	0	0	0	1	5293	813	29	3		3	ESF1	20	13714431	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4191023	13714431	49311089	534	55579											
SEL1L2	80343	broad.mit.edu	37	chr20	13971163	13971163	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attatcaatatctctattaaCagagacaagggcttcatctt	5	8	4	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13971163	G	G	13971163	2	3	51	1	0	0	0	0	0	0	0	1	14124	465	17	4		4	SEL1L2	20	13971163	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	256732	13971163	49054357	535	55580											
RRBP1	6238	broad.mit.edu	37	chr20	17639837	17639837	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccccctcggccttcttgCcctggttctgggccccctcg	12	19	2	0	rs113442443		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17639837	T	T	17639837	1	4	51	0	1	0	0	0	0	0	0	0	13789	754	26	4		4	RRBP1	20	17639837	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3668674	17639837	45385683	536	55581											
C20orf3	57136	broad.mit.edu	37	chr20	24954301	24954301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagggcccgaaccaaacCgggcaatggtctctatttca	10	12	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24954301	A	A	24954301	3	1	51	1	0	0	0	0	1	0	0	0	2131	652	23	1	873	1	C20orf3	20	24954301	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	7314464	24954301	38071219	537	55582											
VSX1	30813	broad.mit.edu	37	chr20	25059479	25059479	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agacacctgtatccggtcttCggggagctcagttttcacag	11	11	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25059479	T	T	25059479	3	4	51	1	0	0	0	0	1	0	0	0	17358	893	31	4	589	4	VSX1	20	25059479	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	105178	25059479	37966041	538	55583											
CHD6	84181	broad.mit.edu	37	chr20	40049592	40049593	+	Nonsense_Mutation	DNP	CC	AA	AA													tgagatgttagtagtgggctCcgtgagatgcaatacctctg							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	40049593	AA	AA	40049592	4	1	51	1	0	0	0	0	0	1	0	0	3360	864	30	3	2492	3	CHD6	20	40049592	Nonsense_Mutation	DNP	CC	TCGA-17-Z018-01A-01W-0746-08	14990113	40049592	22975928	539	55584											
PTPRT	11122	broad.mit.edu	37	chr20	41419861	41419861	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgtggccagaaagtgcTgatggcgagctctgccttca	13	9	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41419861	A	A	41419861	3	1	51	1	0	0	0	0	1	0	0	0	12920	1580	55	5	4042	5	PTPRT	20	41419861	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1370269	41419861	21605659	540	55585											
CDH22	64405	broad.mit.edu	37	chr20	44843315	44843315	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcccctctccctgtccTcctctctgcctttgccttcc	5	21	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44843315	A	A	44843315	1	1	51	0	1	0	0	0	0	0	0	0	3137	1566	54	5		5	CDH22	20	44843315	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	3423454	44843315	18182205	541	55586											
PREX1	57580	broad.mit.edu	37	chr20	47267458	47267458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcaggcaatcctctggcCaatgctctccagcttggtgt	11	12	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47267458	A	A	47267458	3	1	51	1	0	0	0	0	1	0	0	0	12582	594	21	2	2260	2	PREX1	20	47267458	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2424143	47267458	15758062	542	55587											
MOCS3	27304	broad.mit.edu	37	chr20	49576281	49576281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgactgtgcagcttgcgGggaacggcccactgtgactg	15	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49576281	T	T	49576281	3	4	51	1	0	0	0	0	1	0	0	0	9786	1232	43	2	904	2	MOCS3	20	49576281	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2308823	49576281	13449239	543	55588											
TSHZ2	128553	broad.mit.edu	37	chr20	51599512	51599512	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgtatttcaaaagtgatGatggacttgggcatgtttgc	12	4	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51599512	A	A	51599512	1	1	51	0	1	0	0	0	0	0	0	0	16749	1305	45	4		4	TSHZ2	20	51599512	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2023231	51599512	11426008	544	55589											
C20orf107	388799	broad.mit.edu	37	chr20	55111465	55111465	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cataccatgtcacaatctgtAaaatatggggagaagaaagc	9	7	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55111465	G	G	55111465	3	3	51	1	0	0	0	0	1	0	0	0	2099	363	13	5	493	5	C20orf107	20	55111465	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	3511953	55111465	7914055	545	55590											
LSM14B	149986	broad.mit.edu	37	chr20	60706504	60706504	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaccttctggggcccaacTgctactatgacaaatccaag	8	12	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60706504	A	A	60706504	3	1	51	1	0	0	0	0	1	0	0	0	9142	1580	55	5	954	5	LSM14B	20	60706504	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	5595039	60706504	2319016	546	55591											
TPTE	7179	broad.mit.edu	37	chr21	10973783	10973783	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catttgtgggtggactagagGatgtcaaaagaatatagtca	12	4	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10973783	T	T	10973783	1	4	51	0	1	0	0	0	0	0	0	0	16554	1189	41	3		3	TPTE	21	10973783	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08		10973783	37156112	547	55592											
BAGE2	85319	broad.mit.edu	37	chr21	11030640	11030640	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atattttgaattaggtaattCaatggtgcatgcataatttt	7	3	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11030640	T	T	11030640	1	4	51	0	1	0	0	0	0	0	0	0	1297	841	29	4		4	BAGE2	21	11030640	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	56857	11030640	37099255	548	55593											
BAGE2	85319	broad.mit.edu	37	chr21	11042995	11042995	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaagcatgttaaaatGgcatcatcaggcagtaagtt	9	5	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11042995	A	A	11042995	1	1	51	0	1	0	0	0	0	0	0	0	1297	1363	47	4		4	BAGE2	21	11042995	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	12355	11042995	37086900	549	55594			1	51		5	5	5516	N	G_C_A	5.964086e-06
BAGE2	85319	broad.mit.edu	37	chr21	11043892	11043892	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggtggtaaaaaggcacAatgtatgtaattaaccctca	8	6	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11043892	G	G	11043892	1	3	51	0	1	0	0	0	0	0	0	0	1297	145	5	5		5	BAGE2	21	11043892	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	897	11043892	37086003	550	55595			1	51		5	5	5516	N	G_C_A	5.964086e-06
BAGE2	85319	broad.mit.edu	37	chr21	11046419	11046419	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcccaggtagccacagctGagcacagttacccagcagct	9	15	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11046419	A	A	11046419	1	1	51	0	1	0	0	0	0	0	0	0	1297	1305	45	4		4	BAGE2	21	11046419	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2527	11046419	37083476	551	55596			1	51		5	5	5516	N	G_C_A	5.964086e-06
BAGE2	85319	broad.mit.edu	37	chr21	11046912	11046912	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatctccactaccccactgCccccaacccggctctgaacg	5	21	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11046912	T	T	11046912	1	4	51	0	1	0	0	0	0	0	0	0	1297	754	26	4		4	BAGE2	21	11046912	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	493	11046912	37082983	552	55597			1	51		5	5	5516	N	G_C_A	5.964086e-06
BAGE2	85319	broad.mit.edu	37	chr21	11048510	11048510	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtcacatgttttatctcttCagctacatgcaaagatcttg	6	9	4	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11048510	T	T	11048510	1	4	51	0	1	0	0	0	0	0	0	0	1297	841	29	4		4	BAGE2	21	11048510	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1598	11048510	37081385	553	55598			1	51		5	5	5516	N	G_C_A	5.964086e-06
SAMSN1	64092	broad.mit.edu	37	chr21	15882887	15882887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaacactggatgccagGctcctgaggaagttctaatt	12	9	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15882887	T	T	15882887	1	4	51	0	1	0	0	0	0	0	0	0	13941	1218	42	3		3	SAMSN1	21	15882887	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4834377	15882887	32247008	554	55599											
USP25	29761	broad.mit.edu	37	chr21	17198712	17198713	+	Intron	INS	-	GTT	GTT													taatcctgatgcaagagacaINSgttgttacctttattacaca							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTT	17198713	GTT	GTT	17198712	6	5	51	0	1	1	1	0	0	0	0	0	17182	203	7	0		0	USP25	21	17198712	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	1315825	17198712	30931183	555	55600											
CLDN8	9073	broad.mit.edu	37	chr21	31587489	31587489	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaatcaaagtttctttGgggtccattttgagaaagta	9	5	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31587489	T	T	31587489	1	4	51	0	1	0	0	0	0	0	0	0	3523	1363	47	2		2	CLDN8	21	31587489	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	14388777	31587489	16542406	556	55601											
KRTAP6-2	337967	broad.mit.edu	37	chr21	31971050	31971050	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatagccacagccacagaaGaagcgggagccgtagccatg	12	13	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31971050	T	T	31971050	3	4	51	1	0	0	0	0	1	0	0	0	8642	933	33	3	47	3	KRTAP6-2	21	31971050	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	383561	31971050	16158845	557	55602											
TMEM50B	757	broad.mit.edu	37	chr21	34854064	34854064	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccagacgacctgattcacAcagtgcagtggggacatgtc	12	11	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34854064	G	G	34854064	1	3	51	0	1	0	0	0	0	0	0	0	16299	174	6	5		5	TMEM50B	21	34854064	5'Flank	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2883014	34854064	13275831	558	55603											
SON	6651	broad.mit.edu	37	chr21	34924840	34924840	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatactctgctgctgaccgGtctatgatgtcatcgtactc	8	12	4	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34924840	C	C	34924840	2	2	51	1	0	0	0	0	0	0	0	1	15040	1248	44	4		4	SON	21	34924840	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	70776	34924840	13205055	559	55604											
ITSN1	6453	broad.mit.edu	37	chr21	35186420	35186420	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagacttagcatgctatctAgtgccaaaaacttcagcaaa	7	9	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35186420	G	G	35186420	1	3	51	0	1	0	0	0	0	0	0	0	7996	435	15	5		5	ITSN1	21	35186420	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	261580	35186420	12943475	560	55605											
RUNX1	861	broad.mit.edu	37	chr21	36463208	36463208	+	Intron	DEL	C	-	-													attggcatttttgtccggaaCccaggatctttccctcctac					rs10712853		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36463208	-	-	36463208	6	5	51	0	1	1	0	1	0	0	0	0	13857	522	18	0		0	RUNX1	21	36463208	Intron	DEL	C	TCGA-17-Z018-01A-01W-0746-08	1276788	36463208	11666687	561	55606											
PRDM15	63977	broad.mit.edu	37	chr21	43259675	43259675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgccccgccagccctcGggcgccaggagggctgcgcc	14	21	0	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43259675	A	A	43259675	1	1	51	0	1	0	0	0	0	0	0	0	12562	1131	39	4		4	PRDM15	21	43259675	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	6796467	43259675	4870220	562	55607											
C21orf29	54084	broad.mit.edu	37	chr21	45941862	45941862	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaggtgttggccaccacCaggaacgagtagggccccac	13	12	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45941862	A	A	45941862	2	1	51	1	0	0	0	0	0	0	0	1	2146	581	21	2		2	C21orf29	21	45941862	Silent	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2682187	45941862	2188033	563	55608											
CLTCL1	8218	broad.mit.edu	37	chr22	19184160	19184160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcagctcctcaaagtagCcacgatcctagcagaccaac	7	14	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19184160	A	A	19184160	3	1	51	1	0	0	0	0	1	0	0	0	3599	739	26	3	1073	3	CLTCL1	22	19184160	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08		19184160	32120406	564	55609											
C22orf43	51233	broad.mit.edu	37	chr22	23956425	23956425	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggacacagaggaaagatCagtgcaccggtggttggtga	16	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23956425	A	A	23956425	1	1	51	0	1	0	0	0	0	0	0	0	2172	841	29	3		3	C22orf43	22	23956425	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4772265	23956425	27348141	565	55610											
MYO18B	84700	broad.mit.edu	37	chr22	26400946	26400946	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcatggtcctgaaagtcTggggtataactctgccactt	10	10	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26400946	C	C	26400946	1	2	51	0	1	0	0	0	0	0	0	0	10160	1595	55	5		5	MYO18B	22	26400946	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	2444521	26400946	24903620	566	55611											
HORMAD2	150280	broad.mit.edu	37	chr22	30501154	30501154	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctacttcctcttggtgcGgatgtgtgttcccacctttt	8	13	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30501154	A	A	30501154	1	1	51	0	1	0	0	0	0	0	0	0	7354	1131	39	4		4	HORMAD2	22	30501154	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4100208	30501154	20803412	567	55612											
PISD	23761	broad.mit.edu	37	chr22	32017928	32017928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccccagctccagagagcCcaagtagtgtcattagccca	9	15	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32017928	A	A	32017928	1	1	51	0	1	0	0	0	0	0	0	0	12041	638	22	2		2	PISD	22	32017928	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1516774	32017928	19286638	568	55613											
BPIL2	254240	broad.mit.edu	37	chr22	32819844	32819844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatatgtctactatgtgGgccaaactgtactgaggttg	10	6	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32819844	T	T	32819844	1	4	51	0	1	0	0	0	0	0	0	0	1501	1247	43	2		2	BPIL2	22	32819844	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	801916	32819844	18484722	569	55614											
SYN3	8224	broad.mit.edu	37	chr22	32914260	32914260	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctggccttgtggggagagCctctgttgggaggggcttcc	18	9	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32914260	G	G	32914260	3	3	51	1	0	0	0	0	1	0	0	0	15561	738	26	4	370	4	SYN3	22	32914260	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	94416	32914260	18390306	570	55615											
CACNG2	10369	broad.mit.edu	37	chr22	36991060	36991061	+	Intron	INS	-	T	T													gggcagggtgagatgaagtcINStgcatatgtgtgtgtgtgca							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36991061	T	T	36991060	6	5	51	0	1	1	1	0	0	0	0	0	2583	928	32	0		0	CACNG2	22	36991060	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	4076800	36991060	14313506	571	55616											
CSF2RB	1439	broad.mit.edu	37	chr22	37319243	37319243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgatggtgacaagggtcCctgcaggaaagagaggtgac	18	6	0	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37319243	A	A	37319243	1	1	51	0	1	0	0	0	0	0	0	0	3969	638	22	2		2	CSF2RB	22	37319243	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	328183	37319243	13985323	572	55617											
SEPT3	55964	broad.mit.edu	37	chr22	42388740	42388740	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcaagagggtcctcggcCgaaaaactccatgggggatc	14	10	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42388740	T	T	42388740	4	4	51	1	0	0	0	0	0	1	0	0	14178	644	23	4	868	4	SEPT3	22	42388740	Nonsense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	5069497	42388740	8915826	573	55618											
TCF20	6942	broad.mit.edu	37	chr22	42575497	42575498	+	Intron	DEL	AA	-	-													aagtttttttatgaagtgacAaaaaaaaaaaaaaaaaaaaa					rs67057709		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42575498	-	-	42575497	6	5	51	0	1	1	0	1	0	0	0	0	15812	145	5	0		0	TCF20	22	42575497	Intron	DEL	AA	TCGA-17-Z018-01A-01W-0746-08	186757	42575497	8729069	574	55619											
ARSF	416	broad.mit.edu	37	chrX	3028116	3028116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccttcaggtagcttgggaCccaacgtcccttctcctcat	7	16	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3028116	A	A	3028116	1	1	51	0	1	0	0	0	0	0	0	0	995	522	18	3		3	ARSF	23	3028116	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08		3028116	152242444	575	55620											
MXRA5	25878	broad.mit.edu	37	chrX	3229248	3229248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgactctcatctcgtcCttcccgacctgattttcagc	5	16	4	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3229248	A	A	3229248	3	1	51	1	0	0	0	0	1	0	0	0	10097	680	24	2	1494	2	MXRA5	23	3229248	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	201132	3229248	152041312	576	55621											
MID1	4281	broad.mit.edu	37	chrX	10491270	10491270	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaaatattattctgcAtacttttatacttcagatac	5	6	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10491270	C	C	10491270	1	2	51	0	1	0	0	0	0	0	0	0	9669	232	8	5		5	MID1	23	10491270	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	7262022	10491270	144779290	577	55622											
EGFL6	25975	broad.mit.edu	37	chrX	13641860	13641860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgcgactgaaaacaaGgtattgccttccaaagcccc	8	13	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13641860	T	T	13641860	1	4	51	0	1	0	0	0	0	0	0	0	5003	1015	35	2		2	EGFL6	23	13641860	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3150590	13641860	141628700	578	55623											
NHS	4810	broad.mit.edu	37	chrX	17739711	17739711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaagatgaaacaagatGcccaagtgatttcttcttgc	10	7	2	5			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17739711	T	T	17739711	3	4	51	1	0	0	0	0	1	0	0	0	10506	1319	46	3	1122	3	NHS	23	17739711	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	4097851	17739711	137530849	579	55624											
CDKL5	6792	broad.mit.edu	37	chrX	18631449	18631449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaattgtagatttaagaGttgaaataaattctggatga	8	1	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18631449	T	T	18631449	1	4	51	0	1	0	0	0	0	0	0	0	3187	1044	36	3		3	CDKL5	23	18631449	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	891738	18631449	136639111	580	55625											
SH3KBP1	30011	broad.mit.edu	37	chrX	19818018	19818018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttctgtcgcaaatcaaGtgaaaagtaatccaatctct	5	8	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19818018	T	T	19818018	1	4	51	0	1	0	0	0	0	0	0	0	14368	1044	36	3		3	SH3KBP1	23	19818018	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1186569	19818018	135452542	581	55626											
PCYT1B	9468	broad.mit.edu	37	chrX	24690906	24690906	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaggagctcggagtgtccCagttgttgaataaggagaga	16	6	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24690906	A	A	24690906	1	1	51	0	1	0	0	0	0	0	0	0	11705	609	21	2		2	PCYT1B	23	24690906	5'UTR	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4872888	24690906	130579654	582	55627											
POLA1	5422	broad.mit.edu	37	chrX	24766974	24766974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtttgtcttttgttctGtgtggcctgcagtatgacat	11	6	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24766974	T	T	24766974	1	4	51	0	1	0	0	0	0	0	0	0	12282	1392	48	3		3	POLA1	23	24766974	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	76068	24766974	130503586	583	55628											
MAGEB10	139422	broad.mit.edu	37	chrX	27839405	27839405	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcctttttggctgctGcacctgaacagagtcatcat	8	13	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27839405	T	T	27839405	1	4	51	0	1	0	0	0	0	0	0	0	9265	1334	46	3		3	MAGEB10	23	27839405	5'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3072431	27839405	127431155	584	55629											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998107	27998107	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcacgacaaactcactccGggggccatagaaattaacac	8	13	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27998107	T	T	27998107	2	4	51	1	0	0	0	0	0	0	0	1	4310	1115	39	1		1	DCAF8L1	23	27998107	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	158702	27998107	127272453	585	55630											
MAGEB1	4112	broad.mit.edu	37	chrX	30269224	30269224	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcttctgatgcctctccTgggtgtgatcttcttaaagg	12	9	4	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30269224	A	A	30269224	3	1	51	1	0	0	0	0	1	0	0	0	9264	1580	55	5	616	5	MAGEB1	23	30269224	Missense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	2271117	30269224	125001336	586	55631											
TAB3	257397	broad.mit.edu	37	chrX	30872236	30872236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggttaaaatttaccttGtgtgtaggcatagtcatctg	10	5	2	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30872236	T	T	30872236	3	4	51	1	0	0	0	0	1	0	0	0	15616	1386	48	3	616	3	TAB3	23	30872236	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	603012	30872236	124398324	587	55632											
FAM47B	170062	broad.mit.edu	37	chrX	34961433	34961433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaggaagctggaggacgCttgggctcgttgtgaggccc	18	9	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34961433	A	A	34961433	3	1	51	1	0	0	0	0	1	0	0	0	5621	797	28	3	487	3	FAM47B	23	34961433	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	4089197	34961433	120309127	588	55633											
ATP6AP2	10159	broad.mit.edu	37	chrX	40458922	40458923	+	Missense_Mutation	DNP	GG	TT	TT													tggcaggtttggatgaaattGggaagcgttatggggaagac							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	40458923	TT	TT	40458922	3	4	51	1	0	0	0	0	1	0	0	0	1171	1348	47	2	693	2	ATP6AP2	23	40458922	Missense_Mutation	DNP	GG	TCGA-17-Z018-01A-01W-0746-08	5497489	40458922	114811638	589	55634											
PHF16	9767	broad.mit.edu	37	chrX	46898443	46898443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtctgcaacttgtgcaaGttgaagacgggggcttgtat	13	6	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46898443	T	T	46898443	3	4	51	1	0	0	0	0	1	0	0	0	11922	1020	36	3	974	3	PHF16	23	46898443	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	6439521	46898443	108372117	590	55635											
PHF16	9767	broad.mit.edu	37	chrX	46913593	46913593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatcactgccttccacGtcacctgtgcctttgagcac	8	16	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46913593	T	T	46913593	3	4	51	1	0	0	0	0	1	0	0	0	11922	1145	40	3	1036	3	PHF16	23	46913593	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	15150	46913593	108356967	591	55636											
PRAF2	11230	broad.mit.edu	37	chrX	48930132	48930132	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacaggaaggtgcaagcGccgcccgcgacccagagcac	13	15	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48930132	A	A	48930132	2	1	51	1	0	0	0	0	0	0	0	1	12523	1074	38	4		4	PRAF2	23	48930132	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2016539	48930132	106340428	592	55637											
DGKK	139189	broad.mit.edu	37	chrX	50213372	50213372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgtggcaggttctggGgccggctctgtggcaggttc	18	10	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50213372	T	T	50213372	2	4	51	1	0	0	0	0	0	0	0	1	4512	1219	43	2		2	DGKK	23	50213372	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	1283240	50213372	105057188	593	55638											
SSX7	280658	broad.mit.edu	37	chrX	52674373	52674373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcggcctcaatgctgtacCctagaaaattatgagacggg	10	9	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52674373	A	A	52674373	1	1	51	0	1	0	0	0	0	0	0	0	15327	638	22	2		2	SSX7	23	52674373	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2461001	52674373	102596187	594	55639											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	51	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-17-Z018-01A-01W-0746-08	978474	53652847	101617713	595	55640											
FAAH2	158584	broad.mit.edu	37	chrX	57420790	57420791	+	Intron	INS	-	A	A													tcccaacaggctggtgcttcINSaggcgttctagtgctgacag							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57420791	A	A	57420790	6	5	51	0	1	1	1	0	0	0	0	0	5400	841	29	0		0	FAAH2	23	57420790	Intron	INS	-	TCGA-17-Z018-01A-01W-0746-08	3767943	57420790	97849770	596	55641											
ARR3	407	broad.mit.edu	37	chrX	69496325	69496325	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgacactgcagccaggtCctgaagatgcaggaaaggtg	14	9	0	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69496325	A	A	69496325	3	1	51	1	0	0	0	0	1	0	0	0	983	855	30	3	410	3	ARR3	23	69496325	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	12075535	69496325	85774235	597	55642											
ZMYM3	9203	broad.mit.edu	37	chrX	70465445	70465445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctactaggcaccaagatcaCcaataccaccccctcgggca	6	17	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70465445	A	A	70465445	1	1	51	0	1	0	0	0	0	0	0	0	17827	522	18	3		3	ZMYM3	23	70465445	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	969120	70465445	84805115	598	55643											
TAF1	6872	broad.mit.edu	37	chrX	70595026	70595026	+	Frame_Shift_Del	DEL	A	-	-													ggttttattagattatgatgAagatgactatgatgctgatt							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70595026	-	-	70595026	7	5	51	1	0	1	0	1	0	0	0	0	15632	246	9	0	436	0	TAF1	23	70595026	Frame_Shift_Del	DEL	A	TCGA-17-Z018-01A-01W-0746-08	129581	70595026	84675534	599	55644											
NHSL2	340527	broad.mit.edu	37	chrX	71264676	71264676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgtgaagcctgcaaggaCcgaacacccccaccccgatt	8	17	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71264676	A	A	71264676	1	1	51	0	1	0	0	0	0	0	0	0	10507	522	18	3		3	NHSL2	23	71264676	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	669650	71264676	84005884	600	55645											
PHKA1	5255	broad.mit.edu	37	chrX	71825331	71825331	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctttggaaattgctagaTcaattgaaaacaaactttaa	6	5	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71825331	A	A	71825331	1	1	51	0	1	0	0	0	0	0	0	0	11938	1450	50	5		5	PHKA1	23	71825331	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	560655	71825331	83445229	601	55646											
ZDHHC15	158866	broad.mit.edu	37	chrX	74641834	74641834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaaggcctctaaggcaGggcaggagagttgaagaaaa	15	6	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74641834	T	T	74641834	1	4	51	0	1	0	0	0	0	0	0	0	17731	1015	35	2		2	ZDHHC15	23	74641834	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2816503	74641834	80628726	602	55647											
TBX22	50945	broad.mit.edu	37	chrX	79279682	79279682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaatgggccccatagaaTggtactctatgcccaggcta	11	10	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79279682	C	C	79279682	1	2	51	0	1	0	0	0	0	0	0	0	15780	1479	51	5		5	TBX22	23	79279682	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	4637848	79279682	75990878	603	55648											
POF1B	79983	broad.mit.edu	37	chrX	84563198	84563198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacagcactagtcggaGtgacttatcagacatacccc	10	11	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84563198	T	T	84563198	3	4	51	1	0	0	0	0	1	0	0	0	12277	1029	36	3	819	3	POF1B	23	84563198	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5283516	84563198	70707362	604	55649											
POF1B	79983	broad.mit.edu	37	chrX	84569352	84569352	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaataagattttaatttggGactttctgttcttaattaag	7	3	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84569352	T	T	84569352	1	4	51	0	1	0	0	0	0	0	0	0	12277	1189	41	3		3	POF1B	23	84569352	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	6154	84569352	70701208	605	55650											
DACH2	117154	broad.mit.edu	37	chrX	85906205	85906205	+	Intron	SNP	T	C	C													gaatcccagaccaatgactcTtactgttctattgtggggca							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85906205	C	C	85906205	1	2	51	0	1	0	0	0	0	0	0	0	4254	1624	56	5		5	DACH2	23	85906205	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1336853	85906205	69364355	606	55651	265	2									
DACH2	117154	broad.mit.edu	37	chrX	85906211	85906211	+	Intron	SNP	T	C	C													cagaccaatgactcttactgTtctattgtggggcaggagag							TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85906211	C	C	85906211	1	2	51	0	1	0	0	0	0	0	0	0	4254	1740	60	5		5	DACH2	23	85906211	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	6	85906211	69364349	607	55652	265	2									
KLHL4	56062	broad.mit.edu	37	chrX	86869504	86869504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgtgcttgaagccaaaCaagaagaggtcaggatggaa	13	5	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86869504	A	A	86869504	3	1	51	1	0	0	0	0	1	0	0	0	8462	479	17	3	668	3	KLHL4	23	86869504	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	963293	86869504	68401056	608	55653											
DIAPH2	1730	broad.mit.edu	37	chrX	96502845	96502845	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaagatgaccatatccTttatttatttaagcattttg	6	5	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96502845	A	A	96502845	1	1	51	0	1	0	0	0	0	0	0	0	4559	1624	56	5		5	DIAPH2	23	96502845	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	9633341	96502845	58767715	609	55654											
PCDH19	57526	broad.mit.edu	37	chrX	99661647	99661647	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcagaggcagagagagatGtcttgccgtggtcgtgagcc	17	8	1	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99661647	C	C	99661647	3	2	51	1	0	0	0	0	1	0	0	0	11608	1377	48	4	1521	4	PCDH19	23	99661647	Missense_Mutation	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3158802	99661647	55608913	610	55655											
CENPI	2491	broad.mit.edu	37	chrX	100387152	100387152	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactgaagagttccatataAggatttactattcacttgtg	8	6	1	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100387152	G	G	100387152	1	3	51	0	1	0	0	0	0	0	0	0	3263	87	3	5		5	CENPI	23	100387152	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	725505	100387152	54883408	611	55656											
TBC1D8B	54885	broad.mit.edu	37	chrX	106116689	106116689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttcttataacttctaggGtgaagcttctatggtacaaa	8	7	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106116689	T	T	106116689	1	4	51	0	1	0	0	0	0	0	0	0	15748	1276	44	3		3	TBC1D8B	23	106116689	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	5729537	106116689	49153871	612	55657											
COL4A6	1288	broad.mit.edu	37	chrX	107422444	107422444	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataattggggcaaaaagattCacccttgagtcctggaaggc	11	8	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107422444	A	A	107422444	1	1	51	0	1	0	0	0	0	0	0	0	3727	841	29	3		3	COL4A6	23	107422444	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1305755	107422444	47848116	613	55658											
IRS4	8471	broad.mit.edu	37	chrX	107976364	107976364	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcagcagcctagctaCaggtggtggttcagaacatc	11	11	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107976364	G	G	107976364	3	3	51	1	0	0	0	0	1	0	0	0	7912	478	17	4	566	4	IRS4	23	107976364	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	553920	107976364	47294196	614	55659											
GUCY2F	2986	broad.mit.edu	37	chrX	108673616	108673616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaactttttcagccacaCccaatcaccctagaaagaaa	6	12	2	3			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108673616	A	A	108673616	3	1	51	1	0	0	0	0	1	0	0	0	6963	507	18	3	1663	3	GUCY2F	23	108673616	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	697252	108673616	46596944	615	55660											
RGAG1	57529	broad.mit.edu	37	chrX	109694088	109694088	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcacctctaatgggagtAccaaactctggagcattgtc	9	11	3	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109694088	T	T	109694088	2	4	51	1	0	0	0	0	0	0	0	1	13382	378	14	5		5	RGAG1	23	109694088	Silent	SNP	A	TCGA-17-Z018-01A-01W-0746-08	1020472	109694088	45576472	616	55661											
GRIA3	2892	broad.mit.edu	37	chrX	122616718	122616718	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacttgtcggaggtctgggGctggccatgatggtggcttt	16	7	1	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122616718	T	T	122616718	2	4	51	1	0	0	0	0	0	0	0	1	6835	1190	42	3		3	GRIA3	23	122616718	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	12922630	122616718	32653842	617	55662											
OCRL	4952	broad.mit.edu	37	chrX	128692649	128692649	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatttttcttctatgaattTggacaagaaaataaattcac	4	6	3	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128692649	A	A	128692649	4	1	51	1	0	0	0	0	0	1	0	0	10918	1821	63	5	505	5	OCRL	23	128692649	Nonsense_Mutation	SNP	T	TCGA-17-Z018-01A-01W-0746-08	6075931	128692649	26577911	618	55663											
ENOX2	10495	broad.mit.edu	37	chrX	129790501	129790501	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtattaaaagtttgaaaaTatcatgtctgcaagtacatg	9	4	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129790501	C	C	129790501	1	2	51	0	1	0	0	0	0	0	0	0	5169	1421	49	5		5	ENOX2	23	129790501	Intron	SNP	T	TCGA-17-Z018-01A-01W-0746-08	1097852	129790501	25480059	619	55664											
GPC4	2239	broad.mit.edu	37	chrX	132458593	132458593	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaccaaaaaaaaaaaaaaAaaaaggaaaaacgagagttt	5	4	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132458593	T	T	132458593	1	4	51	0	1	0	0	0	0	0	0	0	6665	29	1	5		5	GPC4	23	132458593	Intron	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2668092	132458593	22811967	620	55665											
DDX26B	203522	broad.mit.edu	37	chrX	134690115	134690115	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgttactagcagtggaaAgtacaatgaacttggatatc	9	5	0	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134690115	T	T	134690115	3	4	51	1	0	0	0	0	1	0	0	0	4386	72	3	5	1116	5	DDX26B	23	134690115	Missense_Mutation	SNP	A	TCGA-17-Z018-01A-01W-0746-08	2231522	134690115	20580445	621	55666											
SAGE1	55511	broad.mit.edu	37	chrX	134978251	134978251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaaactctggtaccaagGcacacattgctaagacaatc	6	11	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134978251	T	T	134978251	1	4	51	0	1	0	0	0	0	0	0	0	13920	1218	42	3		3	SAGE1	23	134978251	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	288136	134978251	20292309	622	55667											
FGF13	2258	broad.mit.edu	37	chrX	137756723	137756723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaagacatggaagcaagCtgaaagagggagtggaggtt	17	3	0	4			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137756723	A	A	137756723	1	1	51	0	1	0	0	0	0	0	0	0	5899	812	28	3		3	FGF13	23	137756723	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2778472	137756723	17513837	623	55668											
MAGEC1	9947	broad.mit.edu	37	chrX	140996709	140996709	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggctggagagaacacaGtgctatttgcatttctgttc	11	7	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140996709	T	T	140996709	1	4	51	0	1	0	0	0	0	0	0	0	9272	1044	36	3		3	MAGEC1	23	140996709	3'UTR	SNP	G	TCGA-17-Z018-01A-01W-0746-08	3239986	140996709	14273851	624	55669											
SLITRK2	84631	broad.mit.edu	37	chrX	144905795	144905795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactacacactgaagttccaCtgtctgtcttaattctggga	7	10	3	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144905795	A	A	144905795	3	1	51	1	0	0	0	0	1	0	0	0	14857	564	20	3	1854	3	SLITRK2	23	144905795	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	3909086	144905795	10364765	625	55670											
AFF2	2334	broad.mit.edu	37	chrX	147855157	147855157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaaaaggaaggaaggaaGgaaggaaaggagggagggag	19	1	1	0			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147855157	A	A	147855157	1	1	51	0	1	0	0	0	0	0	0	0	357	1015	35	4		4	AFF2	23	147855157	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	2949362	147855157	7415403	626	55671											
PASD1	139135	broad.mit.edu	37	chrX	150840929	150840929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagctgcaagagcagcCactgaagcataatgtcatcg	11	11	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150840929	A	A	150840929	3	1	51	1	0	0	0	0	1	0	0	0	11565	594	21	2	1762	2	PASD1	23	150840929	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	2985772	150840929	4429631	627	55672											
PRRG3	79057	broad.mit.edu	37	chrX	150867176	150867176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccacgccagtgggaggggGgcacatcccagagccaagag	16	12	0	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150867176	T	T	150867176	1	4	51	0	1	0	0	0	0	0	0	0	12713	1247	43	2		2	PRRG3	23	150867176	Intron	SNP	G	TCGA-17-Z018-01A-01W-0746-08	26247	150867176	4403384	628	55673											
GABRA3	2556	broad.mit.edu	37	chrX	151358394	151358394	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgatactcaaggtggtcatGgtaagcacagtggtgacacc	12	9	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151358394	C	C	151358394	2	2	51	1	0	0	0	0	0	0	0	1	6222	1335	47	4		4	GABRA3	23	151358394	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	491218	151358394	3912166	629	55674											
CSAG1	158511	broad.mit.edu	37	chrX	151909135	151909135	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgatctccctgttggctttCcaggttcccaagacaaccca	8	14	1	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151909135	G	G	151909135	1	3	51	0	1	0	0	0	0	0	0	0	3958	870	30	4		4	CSAG1	23	151909135	Intron	SNP	C	TCGA-17-Z018-01A-01W-0746-08	550741	151909135	3361425	630	55675											
MECP2	4204	broad.mit.edu	37	chrX	153297830	153297830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcacagccggggcggagcCtgacccttctgatgtctctg	14	14	2	2			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153297830	A	A	153297830	3	1	51	1	0	0	0	0	1	0	0	0	9516	681	24	2	1263	2	MECP2	23	153297830	Missense_Mutation	SNP	C	TCGA-17-Z018-01A-01W-0746-08	1388695	153297830	1972730	631	55676											
FUNDC2	65991	broad.mit.edu	37	chrX	154282908	154282908	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgttctagtaactggGggatttttcggaggctttct	12	5	2	1			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154282908	T	T	154282908	2	4	51	1	0	0	0	0	0	0	0	1	6158	1219	43	2		2	FUNDC2	23	154282908	Silent	SNP	G	TCGA-17-Z018-01A-01W-0746-08	985078	154282908	987652	632	55677											
CTRC	11330	broad.mit.edu	37	chr1	15770035	15770036	+	Frame_Shift_Ins	INS	-	G	G													cccctgctatgtcaccggctINSggggccgcctctggagtgag							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15770036	G	G	15770035	7	5	52	1	0	1	1	0	0	0	0	0	4061	1580	55	0	496	0	CTRC	1	15770035	Frame_Shift_Ins	INS	-	TCGA-17-Z020-01A-01W-0746-08		15770035	233480586	1	55678											
NBPF1	55672	broad.mit.edu	37	chr1	16894077	16894082	+	Intron	DEL	ACACAG	-	-													acacacacacacacacacacAcacagagtgagctcagtgaa					rs58320527		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16894082	-	-	16894077	6	5	52	0	1	1	0	1	0	0	0	0	10286	174	6	0		0	NBPF1	1	16894077	Intron	DEL	ACACAG	TCGA-17-Z020-01A-01W-0746-08	1124042	16894077	232356544	2	55679											
PLA2G5	5322	broad.mit.edu	37	chr1	20364794	20364794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatctgcccaggaaaGttcacagctagtcaaaatta	6	8	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20364794	T	T	20364794	1	4	52	0	1	0	0	0	0	0	0	0	12102	1044	36	3		3	PLA2G5	1	20364794	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3470717	20364794	228885827	3	55680											
PLA2G5	5322	broad.mit.edu	37	chr1	20415700	20415700	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaataatgacaagaaaaaaGactgtacatgtttagtatag	9	3	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20415700	T	T	20415700	1	4	52	0	1	0	0	0	0	0	0	0	12102	957	33	3		3	PLA2G5	1	20415700	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	50906	20415700	228834921	4	55681											
PTPRU	10076	broad.mit.edu	37	chr1	29639010	29639010	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcacacagcaggtgtctAatggtgacagatgctgccag	13	10	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29639010	G	G	29639010	1	3	52	0	1	0	0	0	0	0	0	0	12921	377	13	5		5	PTPRU	1	29639010	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	9223310	29639010	219611611	5	55682											
LCK	3932	broad.mit.edu	37	chr1	32745227	32745227	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagaaaggtctgggggcctCcccctggggcaacttgggcc	17	12	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32745227	A	A	32745227	1	1	52	0	1	0	0	0	0	0	0	0	8748	870	30	3		3	LCK	1	32745227	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	3106217	32745227	216505394	6	55683											
CSMD2	114784	broad.mit.edu	37	chr1	34427378	34427378	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctctcttgccatgggacaCgctggcttcccttcaccttc	7	18	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34427378	G	G	34427378	1	3	52	0	1	0	0	0	0	0	0	0	3979	551	19	4		4	CSMD2	1	34427378	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1682151	34427378	214823243	7	55684											
LEPRE1	64175	broad.mit.edu	37	chr1	43221286	43221286	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttctttttccagtaggcttCgctgtcggtactccttggca	10	11	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43221286	T	T	43221286	3	4	52	1	0	0	0	0	1	0	0	0	8801	884	31	4	1166	4	LEPRE1	1	43221286	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	8793908	43221286	206029335	8	55685											
MAST2	23139	broad.mit.edu	37	chr1	46429842	46429842	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatcagggatattggtctaAaattctctttttttgttgtg	8	4	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46429842	C	C	46429842	1	2	52	0	1	0	0	0	0	0	0	0	9417	29	1	5		5	MAST2	1	46429842	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	3208556	46429842	202820779	9	55686											
CYB5RL	606495	broad.mit.edu	37	chr1	54656591	54656591	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaacaggaagagatccaaCagctagaggccggggctcca	13	11	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54656591	G	G	54656591	1	3	52	0	1	0	0	0	0	0	0	0	4163	493	17	4		4	CYB5RL	1	54656591	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	8226749	54656591	194594030	10	55687											
PPAP2B	8613	broad.mit.edu	37	chr1	56989374	56989374	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacctaacttttctagcTaacctctttttcaaggattt	3	9	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56989374	A	A	56989374	1	1	52	0	1	0	0	0	0	0	0	0	12387	1537	53	5		5	PPAP2B	1	56989374	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	2332783	56989374	192261247	11	55688											
PDE4B	5142	broad.mit.edu	37	chr1	66713200	66713200	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactggatccccaggccagCtcttccgctgggctggtact	11	16	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66713200	G	G	66713200	3	3	52	1	0	0	0	0	1	0	0	0	11734	796	28	4	589	4	PDE4B	1	66713200	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	9723826	66713200	182537421	12	55689											
FAM40A	85369	broad.mit.edu	37	chr1	110594385	110594385	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgatgcagctctatgtgctGaagctgctcaaggtacagac	11	9	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110594385	A	A	110594385	2	1	52	1	0	0	0	0	0	0	0	1	5611	1277	45	4		4	FAM40A	1	110594385	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	43881185	110594385	138656236	13	55690											
SYCP1	6847	broad.mit.edu	37	chr1	115455597	115455597	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attatgttgaataaaattccAtattatgtcattacatttgt	4	4	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115455597	T	T	115455597	1	4	52	0	1	0	0	0	0	0	0	0	15550	232	8	5		5	SYCP1	1	115455597	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	4861212	115455597	133795024	14	55691											
TTF2	8458	broad.mit.edu	37	chr1	117618261	117618261	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagctgccacaagcagtgAcgacgaggaggaagatgatg	15	7	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117618261	G	G	117618261	3	3	52	1	0	0	0	0	1	0	0	0	16845	275	10	5	1073	5	TTF2	1	117618261	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	2162664	117618261	131632360	15	55692											
NBPF10	100132406	broad.mit.edu	37	chr1	145277092	145277092	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattccagtaaggacaaacAtctgcccttttcacaatgga	6	10	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145277092	G	G	145277092	1	3	52	0	1	0	0	0	0	0	0	0	10287	232	8	5		5	NBPF10	1	145277092	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	27658831	145277092	103973529	16	55693											
RHBG	57127	broad.mit.edu	37	chr1	156347138	156347138	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcgtgggctttggcttcctCatggtcttcctgcagcgtta	11	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156347138	T	T	156347138	2	4	52	1	0	0	0	0	0	0	0	1	13433	813	29	4		4	RHBG	1	156347138	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	11070046	156347138	92903483	17	55694											
CD1B	910	broad.mit.edu	37	chr1	158301216	158301216	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatggcagcagcagcatttCactgggagatgcaacttctt	10	9	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158301216	T	T	158301216	1	4	52	0	1	0	0	0	0	0	0	0	3005	841	29	4		4	CD1B	1	158301216	5'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1954078	158301216	90949405	18	55695											
CCDC19	25790	broad.mit.edu	37	chr1	159854362	159854362	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgccgccttcctcttggaGagaacagtgccacagtgtct	10	12	2	1	rs115172513	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159854362	C	C	159854362	1	2	52	0	1	0	0	0	0	0	0	0	2822	957	33	4		4	CCDC19	1	159854362	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1553146	159854362	89396259	19	55696											
FCRLB	127943	broad.mit.edu	37	chr1	161692438	161692438	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgcatctccatccttcTgcagctgctgcagtcagatc	8	15	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161692438	C	C	161692438	1	2	52	0	1	0	0	0	0	0	0	0	5858	1595	55	5		5	FCRLB	1	161692438	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	1838076	161692438	87558183	20	55697											
NOS1AP	9722	broad.mit.edu	37	chr1	162184339	162184339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataatttttttttctgttcaAaaataattctcagtgttttt	3	4	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162184339	G	G	162184339	1	3	52	0	1	0	0	0	0	0	0	0	10637	29	1	5		5	NOS1AP	1	162184339	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	491901	162184339	87066282	21	55698											
F5	2153	broad.mit.edu	37	chr1	169526045	169526046	+	Missense_Mutation	DNP	GG	TT	TT													aatgaatggagaataattctGgccccgagctcattcccagc							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	169526046	TT	TT	169526045	3	4	52	1	0	0	0	0	1	0	0	0	5391	1348	47	2	5963	2	F5	1	169526045	Missense_Mutation	DNP	GG	TCGA-17-Z020-01A-01W-0746-08	7341706	169526045	79724576	22	55699											
RFWD2	64326	broad.mit.edu	37	chr1	175956199	175956199	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagttagcaaagtcttagaAagtcctttatagtacaggta	8	5	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175956199	T	T	175956199	2	4	52	1	0	0	0	0	0	0	0	1	13368	1	1	5		5	RFWD2	1	175956199	Silent	SNP	A	TCGA-17-Z020-01A-01W-0746-08	6430154	175956199	73294422	23	55700											
RFWD2	64326	broad.mit.edu	37	chr1	176012449	176012449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcagatagaatacagatctCaaaatgaataaagcaagaaa	6	6	2	5			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176012449	T	T	176012449	1	4	52	0	1	0	0	0	0	0	0	0	13368	841	29	4		4	RFWD2	1	176012449	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	56250	176012449	73238172	24	55701											
SEC16B	89866	broad.mit.edu	37	chr1	177969543	177969543	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacagaagagggtactggtGggtcatgacaaaagctggca	14	6	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177969543	C	C	177969543	1	2	52	0	1	0	0	0	0	0	0	0	14100	1363	47	4		4	SEC16B	1	177969543	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1957094	177969543	71281078	25	55702											
CFHR1	3078	broad.mit.edu	37	chr1	196796071	196796071	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggatacagacttcaaaaCaatgagaacaacatttcatg	6	8	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196796071	T	T	196796071	2	4	52	1	0	0	0	0	0	0	0	1	3314	477	17	4		4	CFHR1	1	196796071	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	18826528	196796071	52454550	26	55703											
KIF21B	23046	broad.mit.edu	37	chr1	200971448	200971448	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacagatcactatagccctCagcgccatcctctcctatca	5	16	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200971448	A	A	200971448	4	1	52	1	0	0	0	0	0	1	0	0	8359	835	29	3	3735	3	KIF21B	1	200971448	Nonsense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	4175377	200971448	48279173	27	55704											
CHIT1	1118	broad.mit.edu	37	chr1	203185839	203185839	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttgcaagtgaaaggggCagcccaggagacccagaaaa	12	8	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203185839	A	A	203185839	1	1	52	0	1	0	0	0	0	0	0	0	3377	725	25	3		3	CHIT1	1	203185839	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2214391	203185839	46064782	28	55705											
PFKFB2	5208	broad.mit.edu	37	chr1	207235398	207235398	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaaactaacacgctacctCaactggattggagtccccac	7	13	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207235398	T	T	207235398	2	4	52	1	0	0	0	0	0	0	0	1	11856	813	29	4		4	PFKFB2	1	207235398	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	4049559	207235398	42015223	29	55706											
ESRRG	2104	broad.mit.edu	37	chr1	216944083	216944083	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacttgattcattgttggatTatattttgtacgtaactatt	6	4	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216944083	C	C	216944083	1	2	52	0	1	0	0	0	0	0	0	0	5304	1769	61	5		5	ESRRG	1	216944083	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	9708685	216944083	32306538	30	55707											
EPRS	2058	broad.mit.edu	37	chr1	220154722	220154722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggggtgaatacctaccaCcacattgcaccactgattga	10	11	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220154722	A	A	220154722	3	1	52	1	0	0	0	0	1	0	0	0	5233	507	18	3	1123	3	EPRS	1	220154722	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	3210639	220154722	29095899	31	55708											
OBSCN	84033	broad.mit.edu	37	chr1	228487119	228487119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagcctgagacaagacgGggctgtgtgtgagctgcaga	15	8	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228487119	T	T	228487119	1	4	52	0	1	0	0	0	0	0	0	0	10907	1247	43	2		2	OBSCN	1	228487119	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	8332397	228487119	20763502	32	55709											
ABCB10	23456	broad.mit.edu	37	chr1	229685163	229685163	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagataacactggacatcGtgagaaatccaaccgcagct	10	10	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229685163	C	C	229685163	3	2	52	1	0	0	0	0	1	0	0	0	41	1145	40	4	1728	4	ABCB10	1	229685163	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1198044	229685163	19565458	33	55710											
PCNXL2	80003	broad.mit.edu	37	chr1	233296031	233296031	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagggatatattactaacctCtcacttcccgttgatgatac	7	10	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233296031	G	G	233296031	3	3	52	1	0	0	0	0	1	0	0	0	11686	913	32	4	2962	4	PCNXL2	1	233296031	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	3610868	233296031	15954590	34	55711											
LYST	1130	broad.mit.edu	37	chr1	235970013	235970013	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttcgaataccatttaagCaatttaattcgattatttga	5	6	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235970013	T	T	235970013	3	4	52	1	0	0	0	0	1	0	0	0	9216	710	25	4	9174	4	LYST	1	235970013	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2673982	235970013	13280608	35	55712											
RYR2	6262	broad.mit.edu	37	chr1	237608811	237608811	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacagtcttccttttcaaTagatttataaggtacttttt	5	7	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237608811	C	C	237608811	2	2	52	1	0	0	0	0	0	0	0	1	13880	1403	49	5		5	RYR2	1	237608811	Silent	SNP	T	TCGA-17-Z020-01A-01W-0746-08	1638798	237608811	11641810	36	55713											
AHCTF1	25909	broad.mit.edu	37	chr1	247087043	247087046	+	Intron	DEL	GTGT	-	-													tgaaatgtgtgcgtgcatgcGtgtgtgtgtgtgtgcgcgta					rs74456165		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247087046	-	-	247087043	6	5	52	0	1	1	0	1	0	0	0	0	408	1160	40	0		0	AHCTF1	1	247087043	Intron	DEL	GTGT	TCGA-17-Z020-01A-01W-0746-08	9478232	247087043	2163578	37	55714											
ZNF496	84838	broad.mit.edu	37	chr1	247464457	247464457	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgctgcttctctgtggggctCcccagctcttctgtgcagta	11	14	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247464457	T	T	247464457	2	4	52	1	0	0	0	0	0	0	0	1	18072	842	30	4		4	ZNF496	1	247464457	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	377414	247464457	1786164	38	55715											
OR2W5	441932	broad.mit.edu	37	chr1	247655069	247655069	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctggtgccgctctccctCatcctcatctcctatggcgt	7	18	4	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247655069	T	T	247655069	3	4	52	1	0	0	0	0	1	0	0	0	11128	826	29	4	642	4	OR2W5	1	247655069	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	190612	247655069	1595552	39	55716											
OR2C3	81472	broad.mit.edu	37	chr1	247695110	247695110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgttgaatgcctttctcCgcccttctgctgacctgatc	9	13	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247695110	A	A	247695110	3	1	52	1	0	0	0	0	1	0	0	0	11087	652	23	1	262	1	OR2C3	1	247695110	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	40041	247695110	1555511	40	55717											
OR2T8	343172	broad.mit.edu	37	chr1	248084349	248084349	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagctatacctcttatttCattctcctaggactctttaa	6	10	4	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248084349	T	T	248084349	2	4	52	1	0	0	0	0	0	0	0	1	11124	825	29	4		4	OR2T8	1	248084349	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	389239	248084349	1166272	41	55718											
LPIN1	23175	broad.mit.edu	37	chr2	11824714	11824714	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaaagaaaataagacaAtgttgtggggtagatatgtt	11	2	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11824714	G	G	11824714	1	3	52	0	1	0	0	0	0	0	0	0	9005	116	4	5		5	LPIN1	2	11824714	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08		11824714	231374659	42	55719											
SMC6	79677	broad.mit.edu	37	chr2	17897975	17897976	+	Intron	INS	-	A	A													atatgatgtaaaagtaattgINSaaaaaaatcattctaaggat							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17897976	A	A	17897975	6	5	52	0	1	1	1	0	0	0	0	0	14901	1305	45	0		0	SMC6	2	17897975	Intron	INS	-	TCGA-17-Z020-01A-01W-0746-08	6073261	17897975	225301398	43	55720											
ATAD2B	54454	broad.mit.edu	37	chr2	24003225	24003226	+	Intron	DEL	AA	-	-													aaacaaacagcaaaaactatAagaggcaaataacataaagc					rs113454961		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24003226	-	-	24003225	6	5	52	0	1	1	0	1	0	0	0	0	1076	377	13	0		0	ATAD2B	2	24003225	Intron	DEL	AA	TCGA-17-Z020-01A-01W-0746-08	6105250	24003225	219196148	44	55721											
HADHB	3032	broad.mit.edu	37	chr2	26486289	26486289	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgttagccaaacccaatAtaaggaatgttgtggtggtg	12	6	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26486289	T	T	26486289	3	4	52	1	0	0	0	0	1	0	0	0	7010	449	16	5	161	5	HADHB	2	26486289	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	2483064	26486289	216713084	45	55722											
ALK	238	broad.mit.edu	37	chr2	29519746	29519746	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtattgggggagatgcataGagcctacctgtcagacacat	13	8	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29519746	T	T	29519746	1	4	52	0	1	0	0	0	0	0	0	0	525	957	33	3		3	ALK	2	29519746	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3033457	29519746	213679627	46	55723											
ALK	238	broad.mit.edu	37	chr2	29520023	29520023	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaccttataagagactcaGctgagttcagcctggtgaga	12	8	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29520023	C	C	29520023	1	2	52	0	1	0	0	0	0	0	0	0	525	986	34	4		4	ALK	2	29520023	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	277	29520023	213679350	47	55724											
PRKD3	23683	broad.mit.edu	37	chr2	37516584	37516584	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaagatacatttgacagaCgtctctttcttactccacta	5	10	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37516584	T	T	37516584	3	4	52	1	0	0	0	0	1	0	0	0	12626	536	19	4	2100	4	PRKD3	2	37516584	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	7996561	37516584	205682789	48	55725											
SRBD1	55133	broad.mit.edu	37	chr2	45616431	45616431	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagaaaataaaatcagcgtCtggccttcgtgggatactca	10	8	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45616431	G	G	45616431	1	3	52	0	1	0	0	0	0	0	0	0	15251	928	32	4		4	SRBD1	2	45616431	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	8099847	45616431	197582942	49	55726											
SMEK2	57223	broad.mit.edu	37	chr2	55792108	55792108	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatcctttgaatgtctgaaCatattcaatcgattcaagtg	6	8	3	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55792108	T	T	55792108	3	4	52	1	0	0	0	0	1	0	0	0	14908	478	17	4	560	4	SMEK2	2	55792108	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	10175677	55792108	187407265	50	55727											
OTX1	5013	broad.mit.edu	37	chr2	63282636	63282636	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatccggcccactgcagGtctggttcaagaaccgccgc	10	18	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63282636	T	T	63282636	3	4	52	1	0	0	0	0	1	0	0	0	11414	1275	44	3	260	3	OTX1	2	63282636	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	7490528	63282636	179916737	51	55728											
ZNF638	27332	broad.mit.edu	37	chr2	71575083	71575083	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaactgtacatatctcaGgactgttgtgagcatcaaat	8	7	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71575083	A	A	71575083	1	1	52	0	1	0	0	0	0	0	0	0	18182	1015	35	4		4	ZNF638	2	71575083	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	8292447	71575083	171624290	52	55729											
CCT7	10574	broad.mit.edu	37	chr2	73471671	73471671	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattctgcccttgtgtcccaGggagcagaggaagctgctgg	15	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73471671	A	A	73471671	5	1	52	1	0	0	0	0	0	0	1	0	2989	1014	35	4	468	4	CCT7	2	73471671	Splice_Site	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1896588	73471671	169727702	53	55730											
SFTPB	6439	broad.mit.edu	37	chr2	85893804	85893804	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagcacttggttgcactggGgcatgagcagcttcaagggg	15	9	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85893804	A	A	85893804	3	1	52	1	0	0	0	0	1	0	0	0	14304	1232	43	4	844	4	SFTPB	2	85893804	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	12422133	85893804	157305569	54	55731											
IL1RL1	9173	broad.mit.edu	37	chr2	102957269	102957269	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattatagtgtgacggcgacCaggtccttcacggtcaaggg	13	9	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102957269	A	A	102957269	2	1	52	1	0	0	0	0	0	0	0	1	7733	581	21	2		2	IL1RL1	2	102957269	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	17063465	102957269	140242104	55	55732											
SH3RF3	344558	broad.mit.edu	37	chr2	110015211	110015211	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgcctttcagcggcgtgtgGatggcaagaagaacaccaag	14	9	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110015211	A	A	110015211	3	1	52	1	0	0	0	0	1	0	0	0	14373	1174	41	4	1125	4	SH3RF3	2	110015211	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	7057942	110015211	133184162	56	55733											
INSIG2	51141	broad.mit.edu	37	chr2	118851575	118851575	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtagctactgaaccttgcCaaaagcaaccagatgatgat	8	10	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118851575	T	T	118851575	1	4	52	0	1	0	0	0	0	0	0	0	7836	609	21	4		4	INSIG2	2	118851575	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	8836364	118851575	124347798	57	55734											
MGAT5	4249	broad.mit.edu	37	chr2	135107435	135107435	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaatttaatcatgcaaattAtgcccaatcgaaaggccaca	6	10	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135107435	G	G	135107435	3	3	52	1	0	0	0	0	1	0	0	0	9641	449	16	5	1206	5	MGAT5	2	135107435	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	16255860	135107435	108091938	58	55735											
MGAT5	4249	broad.mit.edu	37	chr2	135185876	135185876	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgagtgagtcggaggactGaggaggtgctacatgttctc	15	6	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135185876	A	A	135185876	1	1	52	0	1	0	0	0	0	0	0	0	9641	1305	45	4		4	MGAT5	2	135185876	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	78441	135185876	108013497	59	55736											
THSD7B	80731	broad.mit.edu	37	chr2	137534503	137534503	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaaatgattctaagatgaGaaatgacaggaaaagaggag	13	2	1	5			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137534503	C	C	137534503	1	2	52	0	1	0	0	0	0	0	0	0	16003	957	33	4		4	THSD7B	2	137534503	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2348627	137534503	105664870	60	55737											
SCN3A	6328	broad.mit.edu	37	chr2	165950786	165950786	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataattagggctcaatatTggtgatatcacctaatatgt	7	5	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165950786	C	C	165950786	1	2	52	0	1	0	0	0	0	0	0	0	14031	1827	63	5		5	SCN3A	2	165950786	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	28416283	165950786	77248587	61	55738											
XIRP2	129446	broad.mit.edu	37	chr2	168105791	168105791	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgttctgataaccaactctCcacaacatcgccagaaacag	6	13	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168105791	G	G	168105791	3	3	52	1	0	0	0	0	1	0	0	0	17557	855	30	4	7919	4	XIRP2	2	168105791	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2155005	168105791	75093582	62	55739											
LRP2	4036	broad.mit.edu	37	chr2	169995975	169995975	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccactccttcaaagactgggTtaagtagaaaagctgtgaca	9	9	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169995975	A	A	169995975	1	1	52	0	1	0	0	0	0	0	0	0	9043	1740	60	5		5	LRP2	2	169995975	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	1890184	169995975	73203398	63	55740											
SGOL2	151246	broad.mit.edu	37	chr2	201435837	201435837	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgagatgagaaacgcccaGtctattggccgcagatggga	14	8	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201435837	C	C	201435837	3	2	52	1	0	0	0	0	1	0	0	0	14330	1020	36	4	790	4	SGOL2	2	201435837	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	31439862	201435837	41763536	64	55741											
KLF7	8609	broad.mit.edu	37	chr2	207953272	207953272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtgcaaaacgccactcaCatccctcccatgagcactta	5	16	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207953272	A	A	207953272	3	1	52	1	0	0	0	0	1	0	0	0	8422	478	17	3	149	3	KLF7	2	207953272	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	6517435	207953272	35246101	65	55742											
RQCD1	9125	broad.mit.edu	37	chr2	219445507	219445507	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttcagttcttttcattacActtgtatatttctttacctt	3	8	4	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219445507	G	G	219445507	1	3	52	0	1	0	0	0	0	0	0	0	13781	174	6	5		5	RQCD1	2	219445507	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	11492235	219445507	23753866	66	55743											
EPHA4	2043	broad.mit.edu	37	chr2	222428866	222428866	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaactggttctctctgatGaaacgctctttgtcgttgtc	8	10	3	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222428866	T	T	222428866	3	4	52	1	0	0	0	0	1	0	0	0	5211	1281	45	3	2612	3	EPHA4	2	222428866	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2983359	222428866	20770507	67	55744											
IQCA1	79781	broad.mit.edu	37	chr2	237316605	237316605	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggccaaacttggcagtgGtgtcaatgaacttaaggtca	11	8	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237316605	A	A	237316605	1	1	52	0	1	0	0	0	0	0	0	0	7872	1276	44	4		4	IQCA1	2	237316605	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	14887739	237316605	5882768	68	55745											
COL6A3	1293	broad.mit.edu	37	chr2	238277341	238277341	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgaagaccagtctggggtCattggtgatggtctgcagct	15	7	3	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238277341	G	G	238277341	3	3	52	1	0	0	0	0	1	0	0	0	3733	826	29	4	4908	4	COL6A3	2	238277341	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	960736	238277341	4922032	69	55746											
CHL1	10752	broad.mit.edu	37	chr3	423942	423942	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacctgggaagctggagctGaccacaacagcaatattagc	11	10	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	423942	A	A	423942	3	1	52	1	0	0	0	0	1	0	0	0	3380	1290	45	4	2015	4	CHL1	3	423942	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08		423942	197598488	70	55747											
SYN2	6854	broad.mit.edu	37	chr3	12173670	12173670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacatgccatagcactcagCtgtcctctgatattaacctt	6	13	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12173670	A	A	12173670	1	1	52	0	1	0	0	0	0	0	0	0	15560	812	28	3		3	SYN2	3	12173670	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	11749728	12173670	185848760	71	55748											
ULK4	54986	broad.mit.edu	37	chr3	41759404	41759404	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatgataaaacacttgataGcatctatccaaaaatgccgc	5	10	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41759404	C	C	41759404	1	2	52	0	1	0	0	0	0	0	0	0	17104	986	34	4		4	ULK4	3	41759404	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	29585734	41759404	156263026	72	55749											
CCBP2	1238	broad.mit.edu	37	chr3	42906618	42906618	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgggaccatttggaagctCttcctccgcttccagcagaa	9	13	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42906618	T	T	42906618	2	4	52	1	0	0	0	0	0	0	0	1	2760	900	32	4		4	CCBP2	3	42906618	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1147214	42906618	155115812	73	55750											
ANO10	55129	broad.mit.edu	37	chr3	43601004	43601004	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagacaggataaaaacagcaGaagatgtgaagagtttgctt	11	4	0	5			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43601004	A	A	43601004	1	1	52	0	1	0	0	0	0	0	0	0	696	957	33	4		4	ANO10	3	43601004	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	694386	43601004	154421426	74	55751											
ITIH1	3697	broad.mit.edu	37	chr3	52824654	52824654	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggccatctggggatgaaggCcatggggtgggggcgtggtc	21	8	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52824654	G	G	52824654	1	3	52	0	1	0	0	0	0	0	0	0	7973	754	26	4		4	ITIH1	3	52824654	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	9223650	52824654	145197776	75	55752											
FHIT	2272	broad.mit.edu	37	chr3	60718355	60718355	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcaatgtggaagtacacGgtggggttgaccatggctga	16	6	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60718355	A	A	60718355	1	1	52	0	1	0	0	0	0	0	0	0	5934	1131	39	4		4	FHIT	3	60718355	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	7893701	60718355	137304075	76	55753											
FHIT	2272	broad.mit.edu	37	chr3	61119426	61119426	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatactgggaaagaaagtctGagagccaggagaacaaccat	11	7	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61119426	C	C	61119426	1	2	52	0	1	0	0	0	0	0	0	0	5934	1305	45	4		4	FHIT	3	61119426	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	401071	61119426	136903004	77	55754											
PTPRG	5793	broad.mit.edu	37	chr3	62017223	62017223	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaatccttcgaagcgttctGaagaaggaagtagcgcagtg	13	7	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62017223	A	A	62017223	1	1	52	0	1	0	0	0	0	0	0	0	12910	1305	45	4		4	PTPRG	3	62017223	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	897797	62017223	136005207	78	55755											
CADPS	8618	broad.mit.edu	37	chr3	62751729	62751729	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcatggatactttatgctGaagatgccagacccattggt	10	8	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62751729	A	A	62751729	1	1	52	0	1	0	0	0	0	0	0	0	2596	1305	45	4		4	CADPS	3	62751729	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	734506	62751729	135270701	79	55756											
ADAMTS9	56999	broad.mit.edu	37	chr3	64628395	64628395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagccctgacacaaagcCgaggtcactgagcagtggac	13	11	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64628395	T	T	64628395	1	4	52	0	1	0	0	0	0	0	0	0	273	667	23	4		4	ADAMTS9	3	64628395	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1876666	64628395	133394035	80	55757											
ROBO1	6091	broad.mit.edu	37	chr3	78763565	78763565	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttgaacagtcagagtagCagatgcttcagctttgccca	9	11	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78763565	T	T	78763565	3	4	52	1	0	0	0	0	1	0	0	0	13624	710	25	4	4037	4	ROBO1	3	78763565	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	14135170	78763565	119258865	81	55758											
ATG3	64422	broad.mit.edu	37	chr3	112255402	112255402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttttcttcacatgatcCtgactgatgtcttcatacat	5	10	4	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112255402	A	A	112255402	3	1	52	1	0	0	0	0	1	0	0	0	1099	680	24	2	242	2	ATG3	3	112255402	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	33491837	112255402	85767028	82	55759											
ZBTB20	26137	broad.mit.edu	37	chr3	114062455	114062455	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaaggaacacttgaaagtCcaggtcctctgaatggggaa	12	8	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114062455	A	A	114062455	1	1	52	0	1	0	0	0	0	0	0	0	17655	870	30	3		3	ZBTB20	3	114062455	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1807053	114062455	83959975	83	55760											
IGSF11	152404	broad.mit.edu	37	chr3	118730289	118730289	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatgggacagaccaaaattAgtataatctgtgagaagagc	11	6	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118730289	T	T	118730289	1	4	52	0	1	0	0	0	0	0	0	0	7668	435	15	5		5	IGSF11	3	118730289	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	4667834	118730289	79292141	84	55761											
ARHGAP31	57514	broad.mit.edu	37	chr3	119133503	119133503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatggtggagccctgggaGgaaccccagtgggtgacgag	19	8	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119133503	T	T	119133503	3	4	52	1	0	0	0	0	1	0	0	0	882	991	35	2	2773	2	ARHGAP31	3	119133503	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	403214	119133503	78888927	85	55762											
ADPRH	141	broad.mit.edu	37	chr3	119305362	119305362	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggggcccttgcgtctgctCtttttacagcctatgctgtg	12	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119305362	A	A	119305362	3	1	52	1	0	0	0	0	1	0	0	0	331	913	32	3	535	3	ADPRH	3	119305362	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	171859	119305362	78717068	86	55763											
POPDC2	64091	broad.mit.edu	37	chr3	119367867	119367867	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtcttatgattttaagataGagaaagaaggggccttcttg	11	4	2	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119367867	T	T	119367867	1	4	52	0	1	0	0	0	0	0	0	0	12350	957	33	3		3	POPDC2	3	119367867	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	62505	119367867	78654563	87	55764											
SLC15A2	6565	broad.mit.edu	37	chr3	121621574	121621574	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatagtattccatggtgtaTatgtgccacattttcttaat	7	7	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121621574	C	C	121621574	1	2	52	0	1	0	0	0	0	0	0	0	14512	1421	49	5		5	SLC15A2	3	121621574	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	2253707	121621574	76400856	88	55765											
FAM162A	26355	broad.mit.edu	37	chr3	122121940	122121940	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttcctacatcatacctcCcatgttttactcatatgcag	4	12	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122121940	T	T	122121940	1	4	52	0	1	0	0	0	0	0	0	0	5520	638	22	4		4	FAM162A	3	122121940	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	500366	122121940	75900490	89	55766											
KALRN	8997	broad.mit.edu	37	chr3	124149492	124149492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcacctgtgtgcttgtccCgattccctaggttctgggat	10	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124149492	A	A	124149492	1	1	52	0	1	0	0	0	0	0	0	0	8045	667	23	1		1	KALRN	3	124149492	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2027552	124149492	73872938	90	55767											
KBTBD12	166348	broad.mit.edu	37	chr3	127702909	127702909	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatttaatacccacatgagAtttttgtcttcccactttgc	5	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127702909	G	G	127702909	1	3	52	0	1	0	0	0	0	0	0	0	8061	348	12	5		5	KBTBD12	3	127702909	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	3553417	127702909	70319521	91	55768											
CPNE4	131034	broad.mit.edu	37	chr3	131337929	131337929	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcttgcaagggagcaatTgttggggaaggggatatgat	17	3	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131337929	G	G	131337929	1	3	52	0	1	0	0	0	0	0	0	0	3846	1827	63	5		5	CPNE4	3	131337929	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	3635020	131337929	66684501	92	55769											
GFM1	85476	broad.mit.edu	37	chr3	158366792	158366792	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttcaaagggattaggggaGaagaaaaaaggtaaacaagt	12	2	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158366792	A	A	158366792	1	1	52	0	1	0	0	0	0	0	0	0	6405	957	33	4		4	GFM1	3	158366792	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	27028863	158366792	39655638	93	55770											
PLD1	5337	broad.mit.edu	37	chr3	171362664	171362664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttacatgatgcatgacCgaaagctcaaaatagaccat	7	10	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171362664	A	A	171362664	1	1	52	0	1	0	0	0	0	0	0	0	12140	667	23	1		1	PLD1	3	171362664	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	12995872	171362664	26659766	94	55771											
MRFAP1L1	114932	broad.mit.edu	37	chr4	6710967	6710967	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccgaccttaccaccgatctCctccttcaagaagactcgct	5	17	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6710967	G	G	6710967	1	3	52	0	1	0	0	0	0	0	0	0	9856	870	30	4		4	MRFAP1L1	4	6710967	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08		6710967	184443309	95	55772											
SLIT2	9353	broad.mit.edu	37	chr4	20619307	20619307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgggcacctcattctcttGgcaaagcaagaggggtccca	11	12	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20619307	T	T	20619307	1	4	52	0	1	0	0	0	0	0	0	0	14854	1363	47	2		2	SLIT2	4	20619307	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	13908340	20619307	170534969	96	55773											
SLC34A2	10568	broad.mit.edu	37	chr4	25671423	25671425	+	In_Frame_Del	DEL	CTG	-	-													gagaagatgccccagatcttCtgaaagtcatcactaagccc							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25671425	-	-	25671423	7	5	52	1	0	1	0	1	0	0	0	0	14682	912	32	0	812	0	SLC34A2	4	25671423	In_Frame_Del	DEL	CTG	TCGA-17-Z020-01A-01W-0746-08	5052116	25671423	165482853	97	55774											
TMEM156	80008	broad.mit.edu	37	chr4	39003220	39003221	+	Intron	DNP	GC	AT	AT													tcctaagccaaaagaacaaaGctggaggcatcacactacct							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	39003221	AT	AT	39003220	1	1	52	0	1	0	0	0	0	0	0	0	16196	986	34	4		4	TMEM156	4	39003220	Intron	DNP	GC	TCGA-17-Z020-01A-01W-0746-08	13331797	39003220	152151056	98	55775											
SPATA18	132671	broad.mit.edu	37	chr4	52946109	52946109	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagacacaggagcagaagcTaagggatttatcatgaatac	11	6	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52946109	C	C	52946109	1	2	52	0	1	0	0	0	0	0	0	0	15119	1537	53	5		5	SPATA18	4	52946109	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	13942889	52946109	138208167	99	55776											
PDGFRA	5156	broad.mit.edu	37	chr4	54837221	54837221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccaaaagagtccaggacCagacggattcacagccgaat	9	12	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54837221	T	T	54837221	1	4	52	0	1	0	0	0	0	0	0	0	11755	609	21	4		4	PDGFRA	4	54837221	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1891112	54837221	136317055	100	55777											
KIT	3815	broad.mit.edu	37	chr4	55544524	55544524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccttccttccttccctccCtccctccctccctccctccc	0	27	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55544524	T	T	55544524	1	4	52	0	1	0	0	0	0	0	0	0	8400	696	24	4		4	KIT	4	55544524	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	707303	55544524	135609752	101	55778											
KIAA1211	57482	broad.mit.edu	37	chr4	57182258	57182258	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttcaactgcgaccaacagGcagaacagaagaagaagaag	11	9	1	5			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57182258	C	C	57182258	3	2	52	1	0	0	0	0	1	0	0	0	8285	1203	42	4	2608	4	KIAA1211	4	57182258	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1637734	57182258	133972018	102	55779											
PPAT	5471	broad.mit.edu	37	chr4	57266881	57266881	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgttgatgagtttctctTtataggcaagggtttcttat	9	4	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57266881	A	A	57266881	1	1	52	0	1	0	0	0	0	0	0	0	12398	1856	64	5		5	PPAT	4	57266881	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	84623	57266881	133887395	103	55780											
LPHN3	23284	broad.mit.edu	37	chr4	62168024	62168024	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtgttaataagagaccatGagtttgtttggagagtgaga	14	2	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62168024	T	T	62168024	1	4	52	0	1	0	0	0	0	0	0	0	9004	1305	45	3		3	LPHN3	4	62168024	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	4901143	62168024	128986252	104	55781											
RUFY3	22902	broad.mit.edu	37	chr4	71672318	71672318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcaagtatcaagcttgagcGagtttgcaatccctgtcaca	8	10	3	1	rs114009356	byFrequency;by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71672318	T	T	71672318	3	4	52	1	0	0	0	0	1	0	0	0	13851	1058	37	3	2318	3	RUFY3	4	71672318	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	9504294	71672318	119481958	105	55782											
ADAMTS3	9508	broad.mit.edu	37	chr4	73178124	73178124	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtttttggcattcttctGtgttacaaagctggtactca	9	7	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73178124	A	A	73178124	3	1	52	1	0	0	0	0	1	0	0	0	267	1377	48	4	1852	4	ADAMTS3	4	73178124	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1505806	73178124	117976152	106	55783											
NAA11	84779	broad.mit.edu	37	chr4	80246481	80246481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcagaatcagaaagtGtgctgccctgggtctcctgg	11	12	4	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80246481	T	T	80246481	3	4	52	1	0	0	0	0	1	0	0	0	10211	1377	48	3	142	3	NAA11	4	80246481	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	7068357	80246481	110907795	107	55784											
WDFY3	23001	broad.mit.edu	37	chr4	85771114	85771114	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattagtcgtgagacttgtGttgtgaactgcagaagatca	11	7	1	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85771114	A	A	85771114	3	1	52	1	0	0	0	0	1	0	0	0	17397	1377	48	4	10634	4	WDFY3	4	85771114	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	5524633	85771114	105383162	108	55785											
MAPK10	5602	broad.mit.edu	37	chr4	87028333	87028333	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattttctttttccaatctTacaaactcccactgccagaa	2	13	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87028333	C	C	87028333	1	2	52	0	1	0	0	0	0	0	0	0	9364	1769	61	5		5	MAPK10	4	87028333	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	1257219	87028333	104125943	109	55786											
C4orf37	285555	broad.mit.edu	37	chr4	98480164	98480164	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgacaaagaaataaacTgacttccatgaagttgtttt	6	5	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98480164	A	A	98480164	1	1	52	0	1	0	0	0	0	0	0	0	2290	1595	55	5		5	C4orf37	4	98480164	3'UTR	SNP	T	TCGA-17-Z020-01A-01W-0746-08	11451831	98480164	92674112	110	55787											
MANBA	4126	broad.mit.edu	37	chr4	103673340	103673340	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagttctgtggtcagatgctGaagaaatctgcagtgcatct	11	8	4	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103673340	A	A	103673340	1	1	52	0	1	0	0	0	0	0	0	0	9311	1305	45	4		4	MANBA	4	103673340	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	5193176	103673340	87480936	111	55788											
C4orf21	55345	broad.mit.edu	37	chr4	113554419	113554419	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaattaaaaatgacataAaatttcaaccctgattttta	2	6	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113554419	C	C	113554419	1	2	52	0	1	0	0	0	0	0	0	0	2277	29	1	5		5	C4orf21	4	113554419	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	9881079	113554419	77599857	112	55789											
SYNPO2	171024	broad.mit.edu	37	chr4	119952472	119952472	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccaaaccaacagtttccAcaccaacagtcaatgctgtt	4	15	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119952472	C	C	119952472	3	2	52	1	0	0	0	0	1	0	0	0	15576	159	6	5	2556	5	SYNPO2	4	119952472	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	6398053	119952472	71201804	113	55790											
FGA	2243	broad.mit.edu	37	chr4	155507769	155507769	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cataagaggtggagcctcctCgagtaatctcatttccacca	8	12	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155507769	G	G	155507769	3	3	52	1	0	0	0	0	1	0	0	0	5887	884	31	4	1840	4	FGA	4	155507769	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	35555297	155507769	35646507	114	55791											
CPE	1363	broad.mit.edu	37	chr4	166325369	166325369	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagcagaaaggccctccaaGacaaggtgggaagctgagcc	13	10	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166325369	A	A	166325369	1	1	52	0	1	0	0	0	0	0	0	0	3831	957	33	4		4	CPE	4	166325369	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	10817600	166325369	24828907	115	55792											
SH3RF1	57630	broad.mit.edu	37	chr4	170169560	170169560	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaccaaacactgcatgTtctcactcataagtgggagt	8	9	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170169560	G	G	170169560	1	3	52	0	1	0	0	0	0	0	0	0	14371	1740	60	5		5	SH3RF1	4	170169560	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	3844191	170169560	20984716	116	55793											
GALNTL6	442117	broad.mit.edu	37	chr4	173657745	173657745	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttatgaagatgacgggaTtaagagattaaagtaaagac	11	3	0	5	rs148103387	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173657745	C	C	173657745	1	2	52	0	1	0	0	0	0	0	0	0	6287	1508	52	5		5	GALNTL6	4	173657745	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	3488185	173657745	17496531	117	55794											
WDR17	116966	broad.mit.edu	37	chr4	177017722	177017722	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgagcaagatgattggtatGaaggactacaaagagtaaga	12	3	0	6			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177017722	C	C	177017722	3	2	52	1	0	0	0	0	1	0	0	0	17404	1291	45	4	54	4	WDR17	4	177017722	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3359977	177017722	14136554	118	55795											
NSUN2	54888	broad.mit.edu	37	chr5	6611068	6611068	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggccccaccagctcacCatcgctccaggtgcatggcc	11	17	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6611068	T	T	6611068	3	4	52	1	0	0	0	0	1	0	0	0	10773	608	21	4	1113	4	NSUN2	5	6611068	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08		6611068	174304192	119	55796											
CDH18	1016	broad.mit.edu	37	chr5	19473890	19473890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaattcttagagattttaCaacagcaatttcccattttc	5	8	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19473890	A	A	19473890	1	1	52	0	1	0	0	0	0	0	0	0	3133	493	17	3		3	CDH18	5	19473890	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	12862822	19473890	161441370	120	55797											
PDZD2	23037	broad.mit.edu	37	chr5	32072373	32072373	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaggacgaggatcacccggGaagtggctgcagcacgtcgg	17	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32072373	A	A	32072373	3	1	52	1	0	0	0	0	1	0	0	0	11795	1174	41	4	2737	4	PDZD2	5	32072373	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	12598483	32072373	148842887	121	55798											
UGT3A2	167127	broad.mit.edu	37	chr5	36066902	36066902	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccagccatgctcacttctAcggaagccgcggatctcagc	10	16	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36066902	G	G	36066902	1	3	52	0	1	0	0	0	0	0	0	0	17090	406	14	5		5	UGT3A2	5	36066902	5'UTR	SNP	A	TCGA-17-Z020-01A-01W-0746-08	3994529	36066902	144848358	122	55799											
GHR	2690	broad.mit.edu	37	chr5	42465516	42465516	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtttctacttttgcccagtCcttattttgaatagccttcc	6	11	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42465516	A	A	42465516	1	1	52	0	1	0	0	0	0	0	0	0	6435	870	30	3		3	GHR	5	42465516	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	6398614	42465516	138449744	123	55800											
GZMK	3003	broad.mit.edu	37	chr5	54329714	54329714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaccaagaaataccagaCttggatcaaaagcaaccttg	7	9	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54329714	A	A	54329714	3	1	52	1	0	0	0	0	1	0	0	0	6983	565	20	3	773	3	GZMK	5	54329714	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	11864198	54329714	126585546	124	55801											
CAMK4	814	broad.mit.edu	37	chr5	110710570	110710570	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacaaaaaaatcgtaagaaCtgagataggagttcttcttc	9	6	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110710570	T	T	110710570	3	4	52	1	0	0	0	0	1	0	0	0	2631	565	20	4	273	4	CAMK4	5	110710570	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	56380856	110710570	70204690	125	55802											
ZNF608	57507	broad.mit.edu	37	chr5	123973647	123973647	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggttctatcaacattttgTttgtttgttttttgagtcgg	9	5	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123973647	C	C	123973647	1	2	52	0	1	0	0	0	0	0	0	0	18161	1740	60	5		5	ZNF608	5	123973647	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	13263077	123973647	56941613	126	55803											
PSD2	84249	broad.mit.edu	37	chr5	139215492	139215492	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatacctgtgtctagctggCgcacacctggtgttgaattc	11	10	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139215492	T	T	139215492	1	4	52	0	1	0	0	0	0	0	0	0	12753	783	27	4		4	PSD2	5	139215492	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	15241845	139215492	41699768	127	55804											
PCDHA13	56136	broad.mit.edu	37	chr5	140263970	140263970	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgatcattgccatctgcgCggtgtccagcctgttggtgc	12	12	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140263970	T	T	140263970	3	4	52	1	0	0	0	0	1	0	0	0	11617	768	27	4	2119	4	PCDHA13	5	140263970	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1048478	140263970	40651290	128	55805											
PCDHB7	56129	broad.mit.edu	37	chr5	140553607	140553607	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcatcctgaagccatctgtCgaaaacttctatactctggt	6	11	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140553607	A	A	140553607	2	1	52	1	0	0	0	0	0	0	0	1	11641	871	31	3		3	PCDHB7	5	140553607	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	289637	140553607	40361653	129	55806											
PCDHB10	56126	broad.mit.edu	37	chr5	140572893	140572893	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctccagaaaacagcccCattgggttccttattgttaa	8	11	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140572893	A	A	140572893	2	1	52	1	0	0	0	0	0	0	0	1	11629	581	21	2		2	PCDHB10	5	140572893	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	19286	140572893	40342367	130	55807											
PCDHGA12	26025	broad.mit.edu	37	chr5	140812375	140812375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctcgagtctccagctaaCtctgaaacctcagacctcac	6	16	4	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140812375	A	A	140812375	3	1	52	1	0	0	0	0	1	0	0	0	11647	564	20	3	2051	3	PCDHGA12	5	140812375	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	239482	140812375	40102885	131	55808											
ODZ2	57451	broad.mit.edu	37	chr5	166712153	166712153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcttttggagatccaGcatggtggtttttgacagat	13	6	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166712153	T	T	166712153	1	4	52	0	1	0	0	0	0	0	0	0	10930	986	34	3		3	ODZ2	5	166712153	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	25899778	166712153	14203107	132	55809											
ATP6V0E1	8992	broad.mit.edu	37	chr5	172410887	172410887	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtatcacggcctcactgtGcctctcattgtgatgagcgt	11	12	3	2	rs35000513	byFrequency;by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172410887	C	C	172410887	2	2	52	1	0	0	0	0	0	0	0	1	1179	1306	46	4		4	ATP6V0E1	5	172410887	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	5698734	172410887	8504373	133	55810											
F13A1	2162	broad.mit.edu	37	chr6	6175039	6175039	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcatgacaccttctgtgttGaggggctttttagctccgta	10	9	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6175039	A	A	6175039	2	1	52	1	0	0	0	0	0	0	0	1	5383	1277	45	4		4	F13A1	6	6175039	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08		6175039	164940028	134	55811											
F13A1	2162	broad.mit.edu	37	chr6	6185918	6185918	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgccgcaataaacatatgTgtgcatgtgtctttatagca	8	7	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6185918	G	G	6185918	1	3	52	0	1	0	0	0	0	0	0	0	5383	1711	59	5		5	F13A1	6	6185918	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	10879	6185918	164929149	135	55812											
HIST1H3G	8355	broad.mit.edu	37	chr6	26273675	26273675	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatctgtaattttccagactTggcattggcaaggtaaaatg	10	6	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26273675	C	C	26273675	1	2	52	0	1	0	0	0	0	0	0	0	7228	1827	63	5		5	HIST1H3G	6	26273675	5'Flank	SNP	T	TCGA-17-Z020-01A-01W-0746-08	20087757	26273675	144841392	136	55813											
ZKSCAN4	387032	broad.mit.edu	37	chr6	28213679	28213679	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcttccctcaggtggcAtatcttcccatgctcctttt	6	13	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28213679	G	G	28213679	3	3	52	1	0	0	0	0	1	0	0	0	17815	217	8	5	788	5	ZKSCAN4	6	28213679	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1940004	28213679	142901388	137	55814											
HLA-DRA	3122	broad.mit.edu	37	chr6	32411098	32411098	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatggaaaacctgtcaccacAggagtgtcagagacagtctt	10	9	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32411098	T	T	32411098	2	4	52	1	0	0	0	0	0	0	0	1	7274	175	7	5		5	HLA-DRA	6	32411098	Silent	SNP	A	TCGA-17-Z020-01A-01W-0746-08	4197419	32411098	138703969	138	55815											
DAXX	1616	broad.mit.edu	37	chr6	33289692	33289692	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacgatgatgctgttaGcggtggccataggggatcaa	14	9	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33289692	A	A	33289692	3	1	52	1	0	0	0	0	1	0	0	0	4276	971	34	4	2239	4	DAXX	6	33289692	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	878594	33289692	137825375	139	55816											
PHF1	5252	broad.mit.edu	37	chr6	33382864	33382864	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccctcagcagtgcgCaatcagcccgagccccagga	12	17	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33382864	T	T	33382864	2	4	52	1	0	0	0	0	0	0	0	1	11915	711	25	4		4	PHF1	6	33382864	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	93172	33382864	137732203	140	55817											
UBR2	23304	broad.mit.edu	37	chr6	42600601	42600601	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgaggcagaagttcctaGaagggtttgatgcctttttg	13	6	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42600601	T	T	42600601	4	4	52	1	0	0	0	0	0	1	0	0	17028	943	33	3	1700	3	UBR2	6	42600601	Nonsense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	9217737	42600601	128514466	141	55818											
ZNF318	24149	broad.mit.edu	37	chr6	43323078	43323078	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgaggaacgtcgatcagctGagaagcagtggtcaactgag	14	8	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43323078	C	C	43323078	4	2	52	1	0	0	0	0	0	1	0	0	17962	1294	45	4	4873	4	ZNF318	6	43323078	Nonsense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	722477	43323078	127791989	142	55819											
GPR115	221393	broad.mit.edu	37	chr6	47681878	47681878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagctttcccaaccttgggGgctatcctgagagaagccca	10	12	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47681878	T	T	47681878	2	4	52	1	0	0	0	0	0	0	0	1	6697	1219	43	2		2	GPR115	6	47681878	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	4358800	47681878	123433189	143	55820											
PRIM2	5558	broad.mit.edu	37	chr6	57385916	57385916	+	Intron	DEL	A	-	-													gttataaagaaaaatagatcAttatactgcatgttgtctga					rs5876588		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57385916	-	-	57385916	6	5	52	0	1	1	0	1	0	0	0	0	12597	232	8	0		0	PRIM2	6	57385916	Intron	DEL	A	TCGA-17-Z020-01A-01W-0746-08	9704038	57385916	113729151	144	55821											
PPIL6	285755	broad.mit.edu	37	chr6	109726262	109726263	+	Intron	INS	-	A	A													agactccgtctcaaaaaaggINSaaaaaaaaaaagatatcttt					rs71802700		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109726263	A	A	109726262	6	5	52	0	1	1	1	0	0	0	0	0	12432	1189	41	0		0	PPIL6	6	109726262	Intron	INS	-	TCGA-17-Z020-01A-01W-0746-08	52340346	109726262	61388805	145	55822											
HS3ST5	222537	broad.mit.edu	37	chr6	114383995	114383995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtctcagccacgcctgCtgtttgaatagcatggccct	9	13	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114383995	A	A	114383995	3	1	52	1	0	0	0	0	1	0	0	0	7435	796	28	3	1033	3	HS3ST5	6	114383995	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	4657733	114383995	56731072	146	55823											
DCBLD1	285761	broad.mit.edu	37	chr6	117846533	117846533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttccagcaaattctGcccagctggttgtagagacg	9	10	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117846533	T	T	117846533	3	4	52	1	0	0	0	0	1	0	0	0	4313	1319	46	3	539	3	DCBLD1	6	117846533	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3462538	117846533	53268534	147	55824											
GJA1	2697	broad.mit.edu	37	chr6	121769175	121769175	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcatcaagattccactcaAttgtggagaagaaaaaaggt	9	6	2	3	rs146315123	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121769175	C	C	121769175	1	2	52	0	1	0	0	0	0	0	0	0	6464	116	4	5		5	GJA1	6	121769175	3'UTR	SNP	A	TCGA-17-Z020-01A-01W-0746-08	3922642	121769175	49345892	148	55825											
LPA	4018	broad.mit.edu	37	chr6	161007734	161007734	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacctggcaccctctatgtTttcttgtaacaaagtgtaaa	6	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161007734	G	G	161007734	1	3	52	0	1	0	0	0	0	0	0	0	8990	1856	64	5		5	LPA	6	161007734	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	39238559	161007734	10107333	149	55826											
MAP3K4	4216	broad.mit.edu	37	chr6	161527689	161527689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatgataatgttatgcacGttggcttgaggaaggtgacc	12	7	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161527689	T	T	161527689	3	4	52	1	0	0	0	0	1	0	0	0	9344	1145	40	3	4078	3	MAP3K4	6	161527689	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	519955	161527689	9587378	150	55827											
C6orf118	168090	broad.mit.edu	37	chr6	165715222	165715222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgacatagtggtgccggtCcctggtgcctctggacccgg	15	13	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165715222	A	A	165715222	3	1	52	1	0	0	0	0	1	0	0	0	2346	855	30	3	852	3	C6orf118	6	165715222	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	4187533	165715222	5399845	151	55828											
PSMB1	5689	broad.mit.edu	37	chr6	170821867	170821867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagccatgtggagggtaCacacacacacaggggccgca	14	11	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170821867	A	A	170821867	1	1	52	0	1	0	0	0	0	0	0	0	12780	493	17	3		3	PSMB1	6	170821867	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	5106645	170821867	293200	152	55829											
SDK1	221935	broad.mit.edu	37	chr7	3426317	3426317	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaatcaagcccagattttCcagttcagcttctgtaggta	8	9	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3426317	A	A	3426317	1	1	52	0	1	0	0	0	0	0	0	0	14081	870	30	3		3	SDK1	7	3426317	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08		3426317	155712346	153	55830											
C1GALT1	56913	broad.mit.edu	37	chr7	7249745	7249745	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatacgtgcaggtcacaggGgatatgatggcttagcttgg	15	6	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7249745	A	A	7249745	1	1	52	0	1	0	0	0	0	0	0	0	1972	1247	43	4		4	C1GALT1	7	7249745	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3823428	7249745	151888918	154	55831											
HDAC9	9734	broad.mit.edu	37	chr7	18869166	18869166	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagcaagatattgattgtaGatctggtatgtattcctggc	10	5	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18869166	C	C	18869166	3	2	52	1	0	0	0	0	1	0	0	0	7081	942	33	4	2582	4	HDAC9	7	18869166	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	11619421	18869166	140269497	155	55832											
CCDC129	223075	broad.mit.edu	37	chr7	31571203	31571203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagctgcgaaaataaaatGcgtgaaaccaaagaaatgta	9	5	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31571203	T	T	31571203	1	4	52	0	1	0	0	0	0	0	0	0	2790	1334	46	3		3	CCDC129	7	31571203	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	12702037	31571203	127567460	156	55833											
PDE1C	5137	broad.mit.edu	37	chr7	32195515	32195515	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgctctgtaacaatggtgtCtggcacagccatgggtcatg	12	10	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32195515	G	G	32195515	1	3	52	0	1	0	0	0	0	0	0	0	11729	928	32	4		4	PDE1C	7	32195515	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	624312	32195515	126943148	157	55834											
AVL9	23080	broad.mit.edu	37	chr7	32598881	32598881	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggatcctagtgtcttagaGgaccccaacttgaaagaaag	10	8	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32598881	A	A	32598881	2	1	52	1	0	0	0	0	0	0	0	1	1233	991	35	4		4	AVL9	7	32598881	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	403366	32598881	126539782	158	55835											
STARD3NL	83930	broad.mit.edu	37	chr7	38256565	38256565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgggtctcttgtgaagagGgaggtaccttcacagtgtga	15	7	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38256565	T	T	38256565	1	4	52	0	1	0	0	0	0	0	0	0	15376	1247	43	2		2	STARD3NL	7	38256565	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	5657684	38256565	120882098	159	55836											
C7orf10	79783	broad.mit.edu	37	chr7	40656387	40656387	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccccttcccaccttgcccTccaaggggaatggaggcctc	10	17	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40656387	C	C	40656387	1	2	52	0	1	0	0	0	0	0	0	0	2401	1566	54	5		5	C7orf10	7	40656387	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	2399822	40656387	118482276	160	55837											
HECW1	23072	broad.mit.edu	37	chr7	43351324	43351324	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggtgactgagttgccggcGtgccctgaccctgctcactg	13	14	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43351324	A	A	43351324	1	1	52	0	1	0	0	0	0	0	0	0	7109	1160	40	4		4	HECW1	7	43351324	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2694937	43351324	115787339	161	55838											
EGFR	1956	broad.mit.edu	37	chr7	55238294	55238294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttctgccacccctgcacGtgggccgccaggttcccaag	10	18	1	0	rs17290239		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55238294	T	T	55238294	1	4	52	0	1	0	0	0	0	0	0	0	5007	1160	40	3		3	EGFR	7	55238294	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	11886970	55238294	103900369	162	55839											
CLIP2	7461	broad.mit.edu	37	chr7	73769480	73769480	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaggagtggtcaccatGgcacaggggaagagctaggc	17	8	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73769480	C	C	73769480	1	2	52	0	1	0	0	0	0	0	0	0	3565	1363	47	4		4	CLIP2	7	73769480	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	18531186	73769480	85369183	163	55840											
PCLO	27445	broad.mit.edu	37	chr7	82583174	82583174	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtttttcctgaccaaaggtCtctccagatgtaaagtatgt	9	8	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82583174	T	T	82583174	2	4	52	1	0	0	0	0	0	0	0	1	11677	912	32	4		4	PCLO	7	82583174	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	8813694	82583174	76555489	164	55841											
COL1A2	1278	broad.mit.edu	37	chr7	94041845	94041845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcatcataagcttgagGttgtgagaatatgttgacac	12	6	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94041845	T	T	94041845	1	4	52	0	1	0	0	0	0	0	0	0	3710	1276	44	3		3	COL1A2	7	94041845	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	11458671	94041845	65096818	165	55842											
ACHE	43	broad.mit.edu	37	chr7	100491143	100491143	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcatgcccaccgaggcGgctcccgcgctctccccaaa	11	18	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100491143	T	T	100491143	2	4	52	1	0	0	0	0	0	0	0	1	141	1103	39	1		1	ACHE	7	100491143	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6449298	100491143	58647520	166	55843											
MUC17	140453	broad.mit.edu	37	chr7	100683879	100683879	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccacgccagtggccattcCtgaggctagcaccctttcaa	8	16	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100683879	T	T	100683879	3	4	52	1	0	0	0	0	1	0	0	0	10068	681	24	4	9192	4	MUC17	7	100683879	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	192736	100683879	58454784	167	55844											
RELN	5649	broad.mit.edu	37	chr7	103404404	103404404	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagacattgtgtaaattgGccttagacacactggatata	9	6	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103404404	C	C	103404404	1	2	52	0	1	0	0	0	0	0	0	0	13328	1218	42	4		4	RELN	7	103404404	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2720525	103404404	55734259	168	55845											
MLL5	55904	broad.mit.edu	37	chr7	104742407	104742407	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actaaacagagaaaaagtttTtctcggagtaggactcacat	8	7	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104742407	C	C	104742407	2	2	52	1	0	0	0	0	0	0	0	1	9717	1838	64	5		5	MLL5	7	104742407	Silent	SNP	T	TCGA-17-Z020-01A-01W-0746-08	1338003	104742407	54396256	169	55846											
LAMB1	3912	broad.mit.edu	37	chr7	107615628	107615629	+	Intron	DNP	GG	TT	TT													ttggaattacaaagtaaaatGggaatttcaaacacaagaaa							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107615629	TT	TT	107615628	1	4	52	0	1	0	0	0	0	0	0	0	8682	1363	47	2		2	LAMB1	7	107615628	Intron	DNP	GG	TCGA-17-Z020-01A-01W-0746-08	2873221	107615628	51523035	170	55847											
AKR1B10	57016	broad.mit.edu	37	chr7	134212616	134212616	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacagcaacagagagcaGgacgtgagacttctacctgc	10	10	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134212616	A	A	134212616	1	1	52	0	1	0	0	0	0	0	0	0	467	1015	35	4		4	AKR1B10	7	134212616	5'UTR	SNP	G	TCGA-17-Z020-01A-01W-0746-08	26596988	134212616	24926047	171	55848											
SLC37A3	84255	broad.mit.edu	37	chr7	140051137	140051137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgacttgggcaacagaaCtatcatcttggattgaataa	8	8	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140051137	A	A	140051137	3	1	52	1	0	0	0	0	1	0	0	0	14713	565	20	3	843	3	SLC37A3	7	140051137	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	5838521	140051137	19087526	172	55849											
GSTK1	373156	broad.mit.edu	37	chr7	142965391	142965391	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggagattaagaccatcCtggccaacatggtgaaaccc	9	11	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142965391	T	T	142965391	1	4	52	0	1	0	0	0	0	0	0	0	6902	696	24	4		4	GSTK1	7	142965391	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2914254	142965391	16173272	173	55850											
CNTNAP2	26047	broad.mit.edu	37	chr7	147938232	147938232	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgttctctagcaagttaatGaaatctctgttgacttaatt	7	6	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147938232	C	C	147938232	1	2	52	0	1	0	0	0	0	0	0	0	3679	1305	45	4		4	CNTNAP2	7	147938232	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	4972841	147938232	11200431	174	55851											
DPP6	1804	broad.mit.edu	37	chr7	154375974	154375974	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaggcgctgttccctctGctgggagcacctgcctcctc	11	16	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154375974	C	C	154375974	1	2	52	0	1	0	0	0	0	0	0	0	4770	1334	46	4		4	DPP6	7	154375974	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6437742	154375974	4762689	175	55852											
RP1L1	94137	broad.mit.edu	37	chr8	10501631	10501631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgaaagcttgagctctGccccctgccatcttaagcaa	7	13	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10501631	T	T	10501631	1	4	52	0	1	0	0	0	0	0	0	0	13644	1334	46	3		3	RP1L1	8	10501631	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08		10501631	135862391	176	55853											
REEP4	80346	broad.mit.edu	37	chr8	21997064	21997064	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtggacccaatggggaggaGagctcaggtggacagccaga	17	8	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21997064	C	C	21997064	1	2	52	0	1	0	0	0	0	0	0	0	13315	957	33	4		4	REEP4	8	21997064	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	11495433	21997064	124366958	177	55854											
ADAM28	10863	broad.mit.edu	37	chr8	24157656	24157656	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacacacatatatatatctAtctatgatgagagatagata	5	5	2	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24157656	C	C	24157656	1	2	52	0	1	0	0	0	0	0	0	0	246	464	16	5		5	ADAM28	8	24157656	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	2160592	24157656	122206366	178	55855											
C8orf34	116328	broad.mit.edu	37	chr8	69374618	69374618	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaacattagacacatcaatGagacagaaagttaacaagga	7	7	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69374618	C	C	69374618	1	2	52	0	1	0	0	0	0	0	0	0	2448	1305	45	4		4	C8orf34	8	69374618	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	45216962	69374618	76989404	179	55856											
ZFHX4	79776	broad.mit.edu	37	chr8	77766701	77766701	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggaacaccagcacatgcActtccttgctgctcaaaacc	7	15	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77766701	G	G	77766701	3	3	52	1	0	0	0	0	1	0	0	0	17761	159	6	5	7578	5	ZFHX4	8	77766701	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	8392083	77766701	68597321	180	55857											
NBN	4683	broad.mit.edu	37	chr8	90995102	90995102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagataaattttttttTaaaaaaagataagttgatag	6	2	0	3	rs74275325		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90995102	A	A	90995102	1	1	52	0	1	0	0	0	0	0	0	0	10285	1769	61	5		5	NBN	8	90995102	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	13228401	90995102	55368920	181	55858											
INTS8	55656	broad.mit.edu	37	chr8	95888301	95888301	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaatctttgttaatgtaGgtggccattttatgtcagtt	8	5	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95888301	A	A	95888301	5	1	52	1	0	0	0	0	0	0	1	0	7854	1014	35	4	2782	4	INTS8	8	95888301	Splice_Site	SNP	G	TCGA-17-Z020-01A-01W-0746-08	4893199	95888301	50475721	182	55859											
PTDSS1	9791	broad.mit.edu	37	chr8	97307620	97307620	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagtatttaaaccatcccAtaagaatatttaatacttct	2	8	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97307620	G	G	97307620	1	3	52	0	1	0	0	0	0	0	0	0	12842	232	8	5		5	PTDSS1	8	97307620	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1419319	97307620	49056402	183	55860											
POP1	10940	broad.mit.edu	37	chr8	99169980	99169980	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtccatcttgggccacttCcccagggccctggtttgggt	12	14	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99169980	T	T	99169980	2	4	52	1	0	0	0	0	0	0	0	1	12346	854	30	4		4	POP1	8	99169980	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1862360	99169980	47194042	184	55861											
STK3	6788	broad.mit.edu	37	chr8	99608245	99608245	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatatccttcccttcgaGgcacaagcactgacctgtaa	7	12	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99608245	C	C	99608245	1	2	52	0	1	0	0	0	0	0	0	0	15413	1015	35	4		4	STK3	8	99608245	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	438265	99608245	46755777	185	55862											
PABPC1	26986	broad.mit.edu	37	chr8	101719131	101719131	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaacacgctgtgttgaCatgactcgtggaacctgtga	10	11	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101719131	G	G	101719131	3	3	52	1	0	0	0	0	1	0	0	0	11457	478	17	4	499	4	PABPC1	8	101719131	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2110886	101719131	44644891	186	55863											
CSMD3	114788	broad.mit.edu	37	chr8	113276073	113276073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaagtgattagacacagCtgttgaaatatcctgagcct	8	7	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113276073	A	A	113276073	1	1	52	0	1	0	0	0	0	0	0	0	3980	812	28	3		3	CSMD3	8	113276073	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	11556942	113276073	33087949	187	55864											
CSMD3	114788	broad.mit.edu	37	chr8	113323222	113323222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccttgacaggcagggaCtggcgcatcccatgcatgat	11	12	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113323222	A	A	113323222	3	1	52	1	0	0	0	0	1	0	0	0	3980	565	20	3	3341	3	CSMD3	8	113323222	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	47149	113323222	33040800	188	55865											
CSMD3	114788	broad.mit.edu	37	chr8	113363500	113363500	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaaatgatgtggttcaGtacacatacataaaaagttt	6	5	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113363500	C	C	113363500	1	2	52	0	1	0	0	0	0	0	0	0	3980	1044	36	4		4	CSMD3	8	113363500	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	40278	113363500	33000522	189	55866											
COLEC10	10584	broad.mit.edu	37	chr8	120105471	120105471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaggttgacagactgtgGtctgagcttaggctgtggcc	16	8	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120105471	T	T	120105471	1	4	52	0	1	0	0	0	0	0	0	0	3742	1276	44	3		3	COLEC10	8	120105471	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6741971	120105471	26258551	190	55867											
ZHX1	11244	broad.mit.edu	37	chr8	124267459	124267459	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgctggcagtacttggaTgtattctgtttacaatggaa	11	7	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124267459	A	A	124267459	3	1	52	1	0	0	0	0	1	0	0	0	17801	1464	51	5	1897	5	ZHX1	8	124267459	Missense_Mutation	SNP	T	TCGA-17-Z020-01A-01W-0746-08	4161988	124267459	22096563	191	55868											
ADCY8	114	broad.mit.edu	37	chr8	131861916	131861916	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgacgttccgggccaaatAggtctcattaatccaacagc	9	11	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131861916	T	T	131861916	3	4	52	1	0	0	0	0	1	0	0	0	300	420	15	5	1447	5	ADCY8	8	131861916	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	7594457	131861916	14502106	192	55869											
KCNQ3	3786	broad.mit.edu	37	chr8	133381936	133381936	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtggttcagcaagattcAgttactcgtccatgagcact	9	10	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133381936	C	C	133381936	1	2	52	0	1	0	0	0	0	0	0	0	8154	203	7	5		5	KCNQ3	8	133381936	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1520020	133381936	12982086	193	55870											
GLDC	2731	broad.mit.edu	37	chr9	6604889	6604889	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagacgggcagagtgtgttCacatcctgtgaactccattg	12	9	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6604889	G	G	6604889	1	3	52	0	1	0	0	0	0	0	0	0	6497	841	29	4		4	GLDC	9	6604889	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08		6604889	134608542	194	55871											
KDM4C	23081	broad.mit.edu	37	chr9	6911844	6911844	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctggggctcggggaggtggCagggactgggcactgttgcc	21	9	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6911844	G	G	6911844	1	3	52	0	1	0	0	0	0	0	0	0	8200	725	25	4		4	KDM4C	9	6911844	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	306955	6911844	134301587	195	55872											
KIAA1797	54914	broad.mit.edu	37	chr9	20981490	20981490	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacacatctctgatgaacaGatcctgggttttgttgaaaa	8	7	1	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20981490	T	T	20981490	3	4	52	1	0	0	0	0	1	0	0	0	8328	933	33	3	4589	3	KIAA1797	9	20981490	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	14069646	20981490	120231941	196	55873											
TRPM6	140803	broad.mit.edu	37	chr9	77354666	77354666	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaagatgaagcacagtgctCtcctggaagattttatgcca	9	9	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77354666	A	A	77354666	3	1	52	1	0	0	0	0	1	0	0	0	16715	912	32	3	632	3	TRPM6	9	77354666	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	56373176	77354666	63858765	197	55874											
PRUNE2	158471	broad.mit.edu	37	chr9	79380956	79380956	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatacaaaaaaaatagccGcgcgtggtggcaggcacctg	11	9	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79380956	A	A	79380956	1	1	52	0	1	0	0	0	0	0	0	0	12747	1102	38	4		4	PRUNE2	9	79380956	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2026290	79380956	61832475	198	55875											
FANCC	2176	broad.mit.edu	37	chr9	97957647	97957647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtccaactgcaaaagcacCatttgttgaaatttctccat	5	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97957647	A	A	97957647	1	1	52	0	1	0	0	0	0	0	0	0	5721	609	21	2		2	FANCC	9	97957647	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	18576691	97957647	43255784	199	55876											
SUSD1	64420	broad.mit.edu	37	chr9	114841069	114841069	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctttagatgccttgaaaccTccccttttcctttttctttc	4	13	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114841069	A	A	114841069	1	1	52	0	1	0	0	0	0	0	0	0	15525	1566	54	5		5	SUSD1	9	114841069	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	16883422	114841069	26372362	200	55877											
ASTN2	23245	broad.mit.edu	37	chr9	119943317	119943317	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcactggggtagcgcaagGtcagaaacataaacatacat	10	9	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119943317	A	A	119943317	1	1	52	0	1	0	0	0	0	0	0	0	1069	1276	44	4		4	ASTN2	9	119943317	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	5102248	119943317	21270114	201	55878											
DBC1	1620	broad.mit.edu	37	chr9	122004361	122004361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatctggatctcatgaagCctcctcatggtaccatcacg	8	12	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122004361	A	A	122004361	3	1	52	1	0	0	0	0	1	0	0	0	4280	738	26	3	1762	3	DBC1	9	122004361	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2061044	122004361	19209070	202	55879											
NUP188	23511	broad.mit.edu	37	chr9	131730947	131730947	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttggtagtaggcagaccAataggcacctggtggatgag	15	6	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131730947	C	C	131730947	3	2	52	1	0	0	0	0	1	0	0	0	10853	130	5	5	782	5	NUP188	9	131730947	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	9726586	131730947	9482484	203	55880											
PRTFDC1	56952	broad.mit.edu	37	chr10	25145941	25145941	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcctttgcaaaaaggacaGataaattcaacaaaatgcat	5	8	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25145941	C	C	25145941	1	2	52	0	1	0	0	0	0	0	0	0	12743	957	33	4		4	PRTFDC1	10	25145941	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08		25145941	110388806	204	55881											
CHAT	1103	broad.mit.edu	37	chr10	50830323	50830323	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacagagcagatgtccCtgccccaacccactccccca	7	20	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50830323	G	G	50830323	1	3	52	0	1	0	0	0	0	0	0	0	3344	696	24	4		4	CHAT	10	50830323	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	25684382	50830323	84704424	205	55882											
ZWINT	11130	broad.mit.edu	37	chr10	58118172	58118172	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatgctgctgtcctcCaggaagtcatggcaaattta	8	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58118172	A	A	58118172	1	1	52	0	1	0	0	0	0	0	0	0	18378	609	21	2		2	ZWINT	10	58118172	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	7287849	58118172	77416575	206	55883											
COL13A1	1305	broad.mit.edu	37	chr10	71712696	71712696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggataagggagaccaaggagCgcctggattagatgccccct	14	10	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71712696	A	A	71712696	3	1	52	1	0	0	0	0	1	0	0	0	3702	768	27	3	2234	3	COL13A1	10	71712696	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	13594524	71712696	63822051	207	55884											
MYST4	23522	broad.mit.edu	37	chr10	76732041	76732041	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggaacagcttcatggaagGattctgagagaggggccacc	15	8	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76732041	T	T	76732041	1	4	52	0	1	0	0	0	0	0	0	0	10199	1189	41	3		3	MYST4	10	76732041	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	5019345	76732041	58802706	208	55885											
C10orf79	80217	broad.mit.edu	37	chr10	105920842	105920842	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taactcctttacttttttctCataatctttgaattgttttc	2	8	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105920842	G	G	105920842	3	3	52	1	0	0	0	0	1	0	0	0	1629	835	29	4	1552	4	C10orf79	10	105920842	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	29188801	105920842	29613905	209	55886											
TCF7L2	6934	broad.mit.edu	37	chr10	114925376	114925376	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcctcagcccaccctcttCagatggaagcttactagatt	7	14	3	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114925376	G	G	114925376	4	3	52	1	0	0	0	0	0	1	0	0	15820	839	29	4	1785	4	TCF7L2	10	114925376	Nonsense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	9004534	114925376	20609371	210	55887											
FAM160B1	57700	broad.mit.edu	37	chr10	116621056	116621056	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaagcttctgttagtcAgaaagcggttacttggtttg	10	9	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116621056	T	T	116621056	4	4	52	1	0	0	0	0	0	1	0	0	5516	180	7	5	2217	5	FAM160B1	10	116621056	Nonsense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1695680	116621056	18913691	211	55888											
TACC2	10579	broad.mit.edu	37	chr10	123781444	123781444	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtttatacccttttgttTcttccagtcacctctgacaa	5	12	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123781444	C	C	123781444	1	2	52	0	1	0	0	0	0	0	0	0	15621	1798	62	5		5	TACC2	10	123781444	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	7160388	123781444	11753303	212	55889											
TRIM3	10612	broad.mit.edu	37	chr11	6472123	6472123	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagctgtccccctataccTgcaaagtggcggtcagtggc	13	12	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6472123	A	A	6472123	2	1	52	1	0	0	0	0	0	0	0	1	16628	1594	55	5		5	TRIM3	11	6472123	Silent	SNP	T	TCGA-17-Z020-01A-01W-0746-08		6472123	128534393	213	55890											
SOX6	55553	broad.mit.edu	37	chr11	16032997	16032997	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacagctggactttaaaaaTaaaattttgaaggcatttgc	7	5	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16032997	C	C	16032997	1	2	52	0	1	0	0	0	0	0	0	0	15069	1421	49	5		5	SOX6	11	16032997	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	9560874	16032997	118973519	214	55891											
SAA1	6288	broad.mit.edu	37	chr11	18291448	18291448	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatctggctgtgaggccctCagggcagggatacaaagcgg	16	9	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18291448	T	T	18291448	1	4	52	0	1	0	0	0	0	0	0	0	13909	841	29	4		4	SAA1	11	18291448	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2258451	18291448	116715068	215	55892											
NAV2	89797	broad.mit.edu	37	chr11	19650362	19650362	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtcccctacccttctagtCttctggaatcattgattacc	6	13	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19650362	G	G	19650362	1	3	52	0	1	0	0	0	0	0	0	0	10278	928	32	4		4	NAV2	11	19650362	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1358914	19650362	115356154	216	55893											
DNAJC24	120526	broad.mit.edu	37	chr11	31452041	31452041	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaggaaatggattatttgtCagcccgattatttgcaaaga	9	6	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31452041	T	T	31452041	1	4	52	0	1	0	0	0	0	0	0	0	4682	841	29	4		4	DNAJC24	11	31452041	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	11801679	31452041	103554475	217	55894											
LRRC4C	57689	broad.mit.edu	37	chr11	40637054	40637054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcatcacagtcctatcCatgccaatatttactggatg	6	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40637054	A	A	40637054	1	1	52	0	1	0	0	0	0	0	0	0	9095	609	21	2		2	LRRC4C	11	40637054	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	9185013	40637054	94369462	218	55895											
OR5D18	219438	broad.mit.edu	37	chr11	55587308	55587308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttttcctcagccaactctCctttgtggatttctgctatt	5	12	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55587308	A	A	55587308	3	1	52	1	0	0	0	0	1	0	0	0	11251	855	30	3	205	3	OR5D18	11	55587308	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	14950254	55587308	79419208	219	55896											
LRRC55	219527	broad.mit.edu	37	chr11	56949738	56949738	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccgcatcacagcagtgcCgcctggctacctcacatgct	8	17	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56949738	T	T	56949738	3	4	52	1	0	0	0	0	1	0	0	0	9098	652	23	4	373	4	LRRC55	11	56949738	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1362430	56949738	78056778	220	55897											
OR1S1	219959	broad.mit.edu	37	chr11	57983116	57983116	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgacacccatgataaacccCttcatctacagcttgaggaa	7	12	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57983116	G	G	57983116	2	3	52	1	0	0	0	0	0	0	0	1	11066	668	24	4		4	OR1S1	11	57983116	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1033378	57983116	77023400	221	55898											
MTA2	9219	broad.mit.edu	37	chr11	62365393	62365393	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagagccctgcagacagtgCactgcacaaccccaggtgac	11	14	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62365393	G	G	62365393	1	3	52	0	1	0	0	0	0	0	0	0	10003	725	25	4		4	MTA2	11	62365393	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	4382277	62365393	72641123	222	55899											
CAPN1	823	broad.mit.edu	37	chr11	64973128	64973128	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccagcatgcactgtgaCcccgccctgggacaaacaca	9	17	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64973128	T	T	64973128	1	4	52	0	1	0	0	0	0	0	0	0	2648	522	18	4		4	CAPN1	11	64973128	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2607735	64973128	70033388	223	55900											
BBS1	582	broad.mit.edu	37	chr11	66296692	66296692	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggccctggaggtggcttGgggaagagtcatgtgatcct	18	7	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66296692	A	A	66296692	1	1	52	0	1	0	0	0	0	0	0	0	1340	1363	47	4		4	BBS1	11	66296692	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1323564	66296692	68709824	224	55901											
DNAJB13	374407	broad.mit.edu	37	chr11	73675853	73675853	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgtgtgTgtgtgcgcgcgcgcgcatgt	19	6	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73675853	C	C	73675853	1	2	52	0	1	0	0	0	0	0	0	0	4658	1711	59	5		5	DNAJB13	11	73675853	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	7379161	73675853	61330663	225	55902											
ODZ4	26011	broad.mit.edu	37	chr11	79006319	79006319	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagataatcactctgggaAccagctctcctcaggagacc	9	12	4	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79006319	T	T	79006319	1	4	52	0	1	0	0	0	0	0	0	0	10932	58	2	5		5	ODZ4	11	79006319	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	5330466	79006319	56000197	226	55903											
RAB30	27314	broad.mit.edu	37	chr11	82752486	82752486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagtacaaggtcagagaCataaacatatattagaaagg	10	5	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82752486	A	A	82752486	1	1	52	0	1	0	0	0	0	0	0	0	13027	493	17	3		3	RAB30	11	82752486	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	3746167	82752486	52254030	227	55904											
DLG2	1740	broad.mit.edu	37	chr11	85087339	85087339	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtatttgaatttgggccTtgaaaaaataaaacatcatt	7	5	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85087339	G	G	85087339	1	3	52	0	1	0	0	0	0	0	0	0	4595	1624	56	5		5	DLG2	11	85087339	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	2334853	85087339	49919177	228	55905											
TMEM126A	84233	broad.mit.edu	37	chr11	85367357	85367357	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caatgttttcttacaggtatCaatcagctctgttaccacac	5	11	4	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85367357	G	G	85367357	3	3	52	1	0	0	0	0	1	0	0	0	16161	827	29	4	414	4	TMEM126A	11	85367357	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	280018	85367357	49639159	229	55906											
PICALM	8301	broad.mit.edu	37	chr11	85712035	85712035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccatttacctaatgaacAcctgtactcatttttcgaaa	4	12	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85712035	G	G	85712035	1	3	52	0	1	0	0	0	0	0	0	0	11975	174	6	5		5	PICALM	11	85712035	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	344678	85712035	49294481	230	55907											
C11orf73	51501	broad.mit.edu	37	chr11	86055612	86055612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctaaatgaagtattcaGtataatccattaatctatta	4	5	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86055612	T	T	86055612	1	4	52	0	1	0	0	0	0	0	0	0	1673	1044	36	3		3	C11orf73	11	86055612	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	343577	86055612	48950904	231	55908											
ME3	10873	broad.mit.edu	37	chr11	86323230	86323230	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgttcctgtgttagtTtgctgaggatgatagcttcc	10	7	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86323230	C	C	86323230	1	2	52	0	1	0	0	0	0	0	0	0	9512	1856	64	5		5	ME3	11	86323230	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	267618	86323230	48683286	232	55909											
GRM5	2915	broad.mit.edu	37	chr11	88388395	88388395	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caagtttcccattttcagctCcagaagattttatttaaagc	5	9	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88388395	G	G	88388395	1	3	52	0	1	0	0	0	0	0	0	0	6866	870	30	4		4	GRM5	11	88388395	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2065165	88388395	46618121	233	55910											
NOX4	50507	broad.mit.edu	37	chr11	89162786	89162786	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagaaaatctagaagaaatgGataaacttctggaaacatac	7	5	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89162786	T	T	89162786	1	4	52	0	1	0	0	0	0	0	0	0	10653	1189	41	3		3	NOX4	11	89162786	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	774391	89162786	45843730	234	55911											
FAT3	120114	broad.mit.edu	37	chr11	92120604	92120604	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggaaaaggtggtgggataGactggggccaggaacactag	17	5	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92120604	T	T	92120604	1	4	52	0	1	0	0	0	0	0	0	0	5748	957	33	3		3	FAT3	11	92120604	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2957818	92120604	42885912	235	55912											
CNTN5	53942	broad.mit.edu	37	chr11	100129128	100129128	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagaacttccccaaccTaggaagacaggccaacattc	8	14	0	2	rs144562555	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100129128	C	C	100129128	1	2	52	0	1	0	0	0	0	0	0	0	3676	1537	53	5		5	CNTN5	11	100129128	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	8008524	100129128	34877388	236	55913											
MMP20	9313	broad.mit.edu	37	chr11	102457360	102457360	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaccatcctggctaacaCggtgaaaccccatctctact	7	15	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102457360	A	A	102457360	1	1	52	0	1	0	0	0	0	0	0	0	9752	551	19	3		3	MMP20	11	102457360	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2328232	102457360	32549156	237	55914											
CASP1	834	broad.mit.edu	37	chr11	104900974	104900974	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attatcaagagattacatttCttggtcttacaaccaagctt	5	8	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104900974	T	T	104900974	1	4	52	0	1	0	0	0	0	0	0	0	2694	928	32	4		4	CASP1	11	104900974	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2443614	104900974	30105542	238	55915											
AMICA1	120425	broad.mit.edu	37	chr11	118074423	118074423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatattgtgaggactggaGtggagcggggagcagagaaa	18	3	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118074423	T	T	118074423	1	4	52	0	1	0	0	0	0	0	0	0	574	1044	36	3		3	AMICA1	11	118074423	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	13173449	118074423	16932093	239	55916											
TECTA	7007	broad.mit.edu	37	chr11	120973474	120973474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccataaagctctcagttaGcatgctcttgaattgataaa	6	8	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120973474	T	T	120973474	1	4	52	0	1	0	0	0	0	0	0	0	15869	986	34	3		3	TECTA	11	120973474	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2899051	120973474	14033042	240	55917											
OPCML	4978	broad.mit.edu	37	chr11	132307151	132307151	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttactttccgcacatcgggcGcagcgacatcgttcaacgcg	10	14	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132307151	C	C	132307151	3	2	52	1	0	0	0	0	1	0	0	0	10968	1087	38	4	424	4	OPCML	11	132307151	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	11333677	132307151	2699365	241	55918											
ERC1	23085	broad.mit.edu	37	chr12	1213593	1213593	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttggaattctgattataTttcccggagttatgtggaag	10	5	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1213593	G	G	1213593	1	3	52	0	1	0	0	0	0	0	0	0	5252	1508	52	5		5	ERC1	12	1213593	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08		1213593	132638302	242	55919											
NRIP2	83714	broad.mit.edu	37	chr12	2940097	2940097	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctgctcagttaccccaCttagataccccaggatgctc	8	15	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2940097	T	T	2940097	1	4	52	0	1	0	0	0	0	0	0	0	10748	580	20	4		4	NRIP2	12	2940097	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1726504	2940097	130911798	243	55920											
A2ML1	144568	broad.mit.edu	37	chr12	9033271	9033271	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacactcagcagctactcaGcttagctgatagaatcagga	10	10	3	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9033271	C	C	9033271	1	2	52	0	1	0	0	0	0	0	0	0	5	986	34	4		4	A2ML1	12	9033271	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6093174	9033271	124818624	244	55921											
DERA	51071	broad.mit.edu	37	chr12	16189387	16189388	+	Intron	DNP	GA	TT	TT													aggaattgaaaagtcaaattGagaactggagataaaaactc							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	16189388	TT	TT	16189387	1	4	52	0	1	0	0	0	0	0	0	0	4485	1305	45	3		3	DERA	12	16189387	Intron	DNP	GA	TCGA-17-Z020-01A-01W-0746-08	7156116	16189387	117662508	245	55922											
SOX5	6660	broad.mit.edu	37	chr12	23805979	23805979	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatagatggatggatggaTggatggatggatggatggat	18	1	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23805979	C	C	23805979	1	2	52	0	1	0	0	0	0	0	0	0	15068	1479	51	5		5	SOX5	12	23805979	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	7616592	23805979	110045916	246	55923											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	52	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1592305	25398284	108453611	247	55924											
IFLTD1	160492	broad.mit.edu	37	chr12	25641647	25641647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggagaggcactctgcGttttagagtttccagttttt	13	6	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25641647	T	T	25641647	1	4	52	0	1	0	0	0	0	0	0	0	7600	1160	40	3		3	IFLTD1	12	25641647	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	243363	25641647	108210248	248	55925											
ITPR2	3709	broad.mit.edu	37	chr12	26748381	26748381	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctattgacacccttcagtaGtcaaaatctaacttaccctt	3	12	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26748381	C	C	26748381	1	2	52	0	1	0	0	0	0	0	0	0	7991	1044	36	4		4	ITPR2	12	26748381	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1106734	26748381	107103514	249	55926											
LRRK2	120892	broad.mit.edu	37	chr12	40660268	40660268	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatataccatctcacacCagttagaatggcgatcatta	6	9	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40660268	A	A	40660268	1	1	52	0	1	0	0	0	0	0	0	0	9120	609	21	2		2	LRRK2	12	40660268	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	13911887	40660268	93191627	250	55927											
TMEM117	84216	broad.mit.edu	37	chr12	44782164	44782164	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggttctttggacgatttttGaaaaatgagccacgcatgga	11	6	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44782164	A	A	44782164	2	1	52	1	0	0	0	0	0	0	0	1	16154	1281	45	4		4	TMEM117	12	44782164	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	4121896	44782164	89069731	251	55928											
MLL2	8085	broad.mit.edu	37	chr12	49437156	49437156	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccctcacctggtgtatcGgctttgccctcgaggccacg	11	16	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49437156	C	C	49437156	2	2	52	1	0	0	0	0	0	0	0	1	9714	1103	39	4		4	MLL2	12	49437156	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	4654992	49437156	84414739	252	55929											
SCN8A	6334	broad.mit.edu	37	chr12	52163071	52163071	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtctgactttgagaacctCaacacagaggatgttagcag	11	8	2	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52163071	T	T	52163071	2	4	52	1	0	0	0	0	0	0	0	1	14037	813	29	4		4	SCN8A	12	52163071	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2725915	52163071	81688824	253	55930											
CSAD	51380	broad.mit.edu	37	chr12	53567339	53567339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagcctcctctcccaaAcgggcctgaggcccaaaccc	10	18	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53567339	G	G	53567339	1	3	52	0	1	0	0	0	0	0	0	0	3957	58	2	5		5	CSAD	12	53567339	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1404268	53567339	80284556	254	55931											
OR6C3	254786	broad.mit.edu	37	chr12	55725897	55725897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatgaacaggaaactctGcactctacttgtgctgtgtg	9	10	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55725897	T	T	55725897	3	4	52	1	0	0	0	0	1	0	0	0	11286	1319	46	3	415	3	OR6C3	12	55725897	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2158558	55725897	78125998	255	55932											
PPM1H	57460	broad.mit.edu	37	chr12	63042360	63042360	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattagatatccgccatcctCtgtccttcagcacaccccgg	6	17	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63042360	A	A	63042360	3	1	52	1	0	0	0	0	1	0	0	0	12442	913	32	3	94	3	PPM1H	12	63042360	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	7316463	63042360	70809535	256	55933											
MYF5	4617	broad.mit.edu	37	chr12	81112330	81112330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggaagtgatggttcttaTagggaggctttggtaaagca	14	3	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81112330	A	A	81112330	1	1	52	0	1	0	0	0	0	0	0	0	10121	1421	49	5		5	MYF5	12	81112330	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	18069970	81112330	52739565	257	55934											
CEP290	80184	broad.mit.edu	37	chr12	88505592	88505592	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacttgggctttcaaatgcAgactcgcatcaaagattcct	7	11	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88505592	T	T	88505592	3	4	52	1	0	0	0	0	1	0	0	0	3283	188	7	5	5479	5	CEP290	12	88505592	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	7393262	88505592	45346303	258	55935											
ATP2B1	490	broad.mit.edu	37	chr12	89997431	89997431	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaacattataacatcttggAtgattagcttggaaaagaaa	8	4	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89997431	G	G	89997431	1	3	52	0	1	0	0	0	0	0	0	0	1143	348	12	5		5	ATP2B1	12	89997431	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1491839	89997431	43854464	259	55936											
KIAA1033	23325	broad.mit.edu	37	chr12	105521079	105521079	+	Intron	SNP	A	T	T													acttaccaagtaggttttatAaacaagtataatgaaaatat							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105521079	T	T	105521079	1	4	52	0	1	0	0	0	0	0	0	0	8276	377	13	5		5	KIAA1033	12	105521079	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	15523648	105521079	28330816	260	55937	266	2									
KIAA1033	23325	broad.mit.edu	37	chr12	105521081	105521081	+	Intron	SNP	A	G	G													ttaccaagtaggttttataaAcaagtataatgaaaatattt							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105521081	G	G	105521081	1	3	52	0	1	0	0	0	0	0	0	0	8276	58	2	5		5	KIAA1033	12	105521081	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	2	105521081	28330814	261	55938	266	2									
BTBD11	121551	broad.mit.edu	37	chr12	107886056	107886056	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccactgactggaaccccCtaataatgataatgtcttga	6	12	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107886056	T	T	107886056	1	4	52	0	1	0	0	0	0	0	0	0	1548	696	24	4		4	BTBD11	12	107886056	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2364975	107886056	25965839	262	55939											
BTBD11	121551	broad.mit.edu	37	chr12	107916579	107916579	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggaagggagggagggaGgggaagggaagggaagggaa	25	0	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107916579	A	A	107916579	1	1	52	0	1	0	0	0	0	0	0	0	1548	1015	35	4		4	BTBD11	12	107916579	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	30523	107916579	25935316	263	55940											
SELPLG	6404	broad.mit.edu	37	chr12	109017870	109017870	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggggttccaggcccagtcaGaggagtggtgtcagtgctgt	17	8	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109017870	A	A	109017870	2	1	52	1	0	0	0	0	0	0	0	1	14133	933	33	4		4	SELPLG	12	109017870	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1101291	109017870	24834025	264	55941											
SSH1	54434	broad.mit.edu	37	chr12	109209760	109209760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaccgtgacactcacggCctccctgactggtttctgct	9	14	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109209760	A	A	109209760	1	1	52	0	1	0	0	0	0	0	0	0	15302	754	26	3		3	SSH1	12	109209760	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	191890	109209760	24642135	265	55942											
DAO	1610	broad.mit.edu	37	chr12	109292652	109292652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttcaggacgggaagatGccaccgctgggataactggg	14	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109292652	T	T	109292652	1	4	52	0	1	0	0	0	0	0	0	0	4264	1334	46	3		3	DAO	12	109292652	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	82892	109292652	24559243	266	55943											
ARPC3	10094	broad.mit.edu	37	chr12	110883275	110883275	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctctctgggggcaggtcCtttgaattgacttctgatag	11	9	3	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110883275	A	A	110883275	4	1	52	1	0	0	0	0	0	1	0	0	976	690	24	2	472	2	ARPC3	12	110883275	Nonsense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1590623	110883275	22968620	267	55944											
NAA25	80018	broad.mit.edu	37	chr12	112525588	112525588	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcacagctgcctcataaaGttttgtaactaactccgcta	5	12	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112525588	C	C	112525588	3	2	52	1	0	0	0	0	1	0	0	0	10215	1029	36	4	2701	4	NAA25	12	112525588	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1642313	112525588	21326307	268	55945											
C12orf51	283450	broad.mit.edu	37	chr12	112665780	112665780	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgttgctcagtttagtgtGagcttcaagctgtggattca	11	7	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112665780	C	C	112665780	1	2	52	0	1	0	0	0	0	0	0	0	1709	1305	45	4		4	C12orf51	12	112665780	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	140192	112665780	21186115	269	55946											
CIT	11113	broad.mit.edu	37	chr12	120147592	120147592	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagagagagagagagagagAgtgtgtgtgtgtgtgtgtgt	20	0	0	5	rs150206566	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120147592	T	T	120147592	1	4	52	0	1	0	0	0	0	0	0	0	3469	319	11	5		5	CIT	12	120147592	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	7481812	120147592	13704303	270	55947											
CAMKK2	10645	broad.mit.edu	37	chr12	121708849	121708849	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccttcaggagaccaaggtGggaggatcacttgagttcag	14	9	3	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121708849	C	C	121708849	1	2	52	0	1	0	0	0	0	0	0	0	2633	1363	47	4		4	CAMKK2	12	121708849	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1561257	121708849	12143046	271	55948											
STARD13	90627	broad.mit.edu	37	chr13	33751982	33751982	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaaggaaggaaggaaaGgaaggaaggaaggaaggaag	20	0	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33751982	A	A	33751982	1	1	52	0	1	0	0	0	0	0	0	0	15374	1015	35	4		4	STARD13	13	33751982	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08		33751982	81417896	272	55949											
LCP1	3936	broad.mit.edu	37	chr13	46716599	46716599	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacgatttaacgtcatcatCttgattatgataaataccag	5	7	3	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46716599	A	A	46716599	1	1	52	0	1	0	0	0	0	0	0	0	8763	928	32	3		3	LCP1	13	46716599	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	12964617	46716599	68453279	273	55950											
CDADC1	81602	broad.mit.edu	37	chr13	49841903	49841903	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtaaacaagaaagaatAaaagaatatgaaatgttatt	7	1	0	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49841903	G	G	49841903	3	3	52	1	0	0	0	0	1	0	0	0	3083	352	13	5	726	5	CDADC1	13	49841903	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	3125304	49841903	65327975	274	55951											
OR4K14	122740	broad.mit.edu	37	chr14	20483244	20483244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggttacccagcataatggCcacatagaccccaaagaaaa	7	11	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20483244	A	A	20483244	3	1	52	1	0	0	0	0	1	0	0	0	11163	739	26	3	826	3	OR4K14	14	20483244	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08		20483244	86866296	275	55952											
SNX6	58533	broad.mit.edu	37	chr14	35038167	35038167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacgctgtggaagcagctcGcgtgtacaaccagttctcat	10	13	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35038167	A	A	35038167	1	1	52	0	1	0	0	0	0	0	0	0	15020	1102	38	4		4	SNX6	14	35038167	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	14554923	35038167	72311373	276	55953											
FAM179B	23116	broad.mit.edu	37	chr14	45432036	45432036	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacgcaaggaagctttgtatCgggcactgggccgagtgctt	15	9	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45432036	T	T	45432036	3	4	52	1	0	0	0	0	1	0	0	0	5551	875	31	4	414	4	FAM179B	14	45432036	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	10393869	45432036	61917504	277	55954											
FBXO34	55030	broad.mit.edu	37	chr14	55819090	55819090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaggcattgccctatgGgccagggtattggatgtgct	14	9	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55819090	T	T	55819090	3	4	52	1	0	0	0	0	1	0	0	0	5801	1232	43	2	1984	2	FBXO34	14	55819090	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	10387054	55819090	51530450	278	55955											
SMOC1	64093	broad.mit.edu	37	chr14	70406653	70406653	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagctgtcgattcaggtgCcagagcagggatgggcttca	14	9	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70406653	T	T	70406653	1	4	52	0	1	0	0	0	0	0	0	0	14915	754	26	4		4	SMOC1	14	70406653	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	14587563	70406653	36942887	279	55956											
ESRRB	2103	broad.mit.edu	37	chr14	76929098	76929098	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacaagctgtggacctgtGtcccagggtgagacccagtc	12	14	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76929098	A	A	76929098	1	1	52	0	1	0	0	0	0	0	0	0	5303	1392	48	4		4	ESRRB	14	76929098	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6522445	76929098	30420442	280	55957											
NDN	4692	broad.mit.edu	37	chr15	23931409	23931409	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagactttgctagtcctcaGagacactgctgcgagggtag	12	11	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23931409	A	A	23931409	3	1	52	1	0	0	0	0	1	0	0	0	10342	942	33	4	13	4	NDN	15	23931409	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08		23931409	78599983	281	55958											
FSIP1	161835	broad.mit.edu	37	chr15	40059345	40059345	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtgtgagctactgctctCaattccatcatttcctctta	6	12	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40059345	G	G	40059345	1	3	52	0	1	0	0	0	0	0	0	0	6134	841	29	4		4	FSIP1	15	40059345	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	16127936	40059345	62472047	282	55959											
RAD51	5888	broad.mit.edu	37	chr15	41011072	41011072	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagggtacctttaggccaGaacggctgctggcagtggct	15	10	0	2	rs77029343		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41011072	C	C	41011072	3	2	52	1	0	0	0	0	1	0	0	0	13093	943	33	4	648	4	RAD51	15	41011072	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	951727	41011072	61520320	283	55960											
ZSCAN29	146050	broad.mit.edu	37	chr15	43653142	43653142	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaaaaacaaggaacaaaCagtggcataaatcctaaagt	8	7	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43653142	T	T	43653142	1	4	52	0	1	0	0	0	0	0	0	0	18365	493	17	4		4	ZSCAN29	15	43653142	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2642070	43653142	58878250	284	55961											
ATP8B4	79895	broad.mit.edu	37	chr15	50154509	50154509	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccactggcataactgaaGccactgttgttaagagaatt	8	10	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50154509	A	A	50154509	3	1	52	1	0	0	0	0	1	0	0	0	1201	971	34	4	356	4	ATP8B4	15	50154509	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6501367	50154509	52376883	285	55962											
ATP8B4	79895	broad.mit.edu	37	chr15	50226286	50226286	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaattcatgaactttgggatCacccattttaatggattcca	7	8	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50226286	A	A	50226286	3	1	52	1	0	0	0	0	1	0	0	0	1201	826	29	3	2253	3	ATP8B4	15	50226286	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	71777	50226286	52305106	286	55963											
ALDH1A2	8854	broad.mit.edu	37	chr15	58531962	58531962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatcaggccgctccaaacTggtaaaaatatcaagtttct	8	9	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58531962	A	A	58531962	1	1	52	0	1	0	0	0	0	0	0	0	491	1595	55	5		5	ALDH1A2	15	58531962	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	8305676	58531962	43999430	287	55964											
RPS27L	51065	broad.mit.edu	37	chr15	63447831	63447831	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgatataccttctgtgagtCtggcctttcctcctgtaggc	9	11	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63447831	T	T	63447831	3	4	52	1	0	0	0	0	1	0	0	0	13751	913	32	4	47	4	RPS27L	15	63447831	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	4915869	63447831	39083561	288	55965											
DAPK2	23604	broad.mit.edu	37	chr15	64332369	64332369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcacacagtctcctacCtccccagctcctctccgatg	4	21	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64332369	A	A	64332369	3	1	52	1	0	0	0	0	1	0	0	0	4269	695	24	2	1064	2	DAPK2	15	64332369	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	884538	64332369	38199023	289	55966											
UACA	55075	broad.mit.edu	37	chr15	70961491	70961491	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcatttgtttaactttaCcttctgactcatacatcctc	3	12	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70961491	T	T	70961491	3	4	52	1	0	0	0	0	1	0	0	0	16950	507	18	4	2734	4	UACA	15	70961491	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	6629122	70961491	31569901	290	55967											
PSMA4	5685	broad.mit.edu	37	chr15	78834748	78834748	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatttgtttctagcttgcttCattgctgatttcttttgggc	8	7	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78834748	T	T	78834748	1	4	52	0	1	0	0	0	0	0	0	0	12775	841	29	4		4	PSMA4	15	78834748	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	7873257	78834748	23696644	291	55968											
ACAN	176	broad.mit.edu	37	chr15	89400400	89400400	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagaggacctcagcaggctCccttctggagaagaagttct	12	10	3	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89400400	T	T	89400400	2	4	52	1	0	0	0	0	0	0	0	1	117	842	30	4		4	ACAN	15	89400400	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	10565652	89400400	13130992	292	55969											
MCTP2	55784	broad.mit.edu	37	chr15	94942203	94942203	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgacagattagagatggacAaccgaattgttatgtactaa	10	5	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94942203	T	T	94942203	3	4	52	1	0	0	0	0	1	0	0	0	9494	130	5	5	1856	5	MCTP2	15	94942203	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	5541803	94942203	7589189	293	55970											
A2BP1	54715	broad.mit.edu	37	chr16	6992617	6992617	+	Intron	SNP	G	T	T													aagacagagtggacttttcaGtgcaggagacggtgctaggc					rs144225211	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6992617	T	T	6992617	1	4	52	0	1	0	0	0	0	0	0	0	3	1044	36	3		3	A2BP1	16	6992617	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08		6992617	83362136	294	55971	267	2									
A2BP1	54715	broad.mit.edu	37	chr16	6992621	6992621	+	Intron	SNP	A	C	C													cagagtggacttttcagtgcAggagacggtgctaggcagag					rs148306268	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6992621	C	C	6992621	1	2	52	0	1	0	0	0	0	0	0	0	3	203	7	5		5	A2BP1	16	6992621	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	4	6992621	83362132	295	55972	267	2									
ABCC6	368	broad.mit.edu	37	chr16	16302427	16302427	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttagcagagatggggtttCactatgttggccagattggt	13	5	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16302427	T	T	16302427	1	4	52	0	1	0	0	0	0	0	0	0	57	841	29	4		4	ABCC6	16	16302427	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	9309806	16302427	74052326	296	55973											
SMG1	23049	broad.mit.edu	37	chr16	18883652	18883652	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagaactgaggctactagaGataaagtgatcatgcctgaa	11	6	1	5			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18883652	A	A	18883652	2	1	52	1	0	0	0	0	0	0	0	1	14909	932	33	4		4	SMG1	16	18883652	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2581225	18883652	71471101	297	55974											
EARS2	124454	broad.mit.edu	37	chr16	23541066	23541066	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaatcctgacaccacaccTgtctcagcaggaggatcctc	8	15	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23541066	A	A	23541066	3	1	52	1	0	0	0	0	1	0	0	0	4918	1594	55	5	367	5	EARS2	16	23541066	Missense_Mutation	SNP	T	TCGA-17-Z020-01A-01W-0746-08	4657414	23541066	66813687	298	55975											
C16orf87	388272	broad.mit.edu	37	chr16	46858384	46858384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaggacatgatttacatGcaacaggaacctgtaggaaa	9	8	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46858384	T	T	46858384	3	4	52	1	0	0	0	0	1	0	0	0	1854	1319	46	3	399	3	C16orf87	16	46858384	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	23317318	46858384	43496369	299	55976											
ABCC11	85320	broad.mit.edu	37	chr16	48218332	48218332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagctcagagagggcccaCacagagtcaccccctcacct	8	17	3	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48218332	A	A	48218332	1	1	52	0	1	0	0	0	0	0	0	0	51	493	17	3		3	ABCC11	16	48218332	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1359948	48218332	42136421	300	55977											
SNX20	124460	broad.mit.edu	37	chr16	50707574	50707574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtggcacagcagcacggCgcacagggccgggacggcgg	20	13	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50707574	A	A	50707574	3	1	52	1	0	0	0	0	1	0	0	0	15006	768	27	3	403	3	SNX20	16	50707574	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2489242	50707574	39647179	301	55978											
CHD9	80205	broad.mit.edu	37	chr16	53306155	53306156	+	Intron	INS	-	A	A													tggaaggtatcaattggaatINSaaaaaaaaagggacactacc					rs149278265	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53306156	A	A	53306155	6	5	52	0	1	1	1	0	0	0	0	0	3363	1421	49	0		0	CHD9	16	53306155	Intron	INS	-	TCGA-17-Z020-01A-01W-0746-08	2598581	53306155	37048598	302	55979											
CES1	1066	broad.mit.edu	37	chr16	55846924	55846924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgttttcagcagcagcatcCcatcaatcacagtgcccaga	8	13	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55846924	G	G	55846924	3	3	52	1	0	0	0	0	1	0	0	0	3299	623	22	4	753	4	CES1	16	55846924	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2540769	55846924	34507829	303	55980											
POLR2C	5432	broad.mit.edu	37	chr16	57503186	57503186	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctcgagacctcatctccaAcagcccccgggtcattccgg	9	17	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57503186	G	G	57503186	3	3	52	1	0	0	0	0	1	0	0	0	12311	43	2	5	386	5	POLR2C	16	57503186	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1656262	57503186	32851567	304	55981											
PDPR	55066	broad.mit.edu	37	chr16	70190352	70190352	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtctgagtgtcgctggatGactcggcgtttcctttcttt	13	9	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70190352	T	T	70190352	1	4	52	0	1	0	0	0	0	0	0	0	11783	1305	45	3		3	PDPR	16	70190352	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	12687166	70190352	20164401	305	55982											
EXOSC6	118460	broad.mit.edu	37	chr16	70284909	70284909	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcgacgcaaactggaggCcgatggcgcgggtcttttcg	14	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70284909	A	A	70284909	1	1	52	0	1	0	0	0	0	0	0	0	5361	754	26	3		3	EXOSC6	16	70284909	3'UTR	SNP	C	TCGA-17-Z020-01A-01W-0746-08	94557	70284909	20069844	306	55983											
HYDIN	54768	broad.mit.edu	37	chr16	71025343	71025343	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agattcactcattgggctgtCatcgccacacagtctcaggt	9	12	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71025343	G	G	71025343	1	3	52	0	1	0	0	0	0	0	0	0	7537	841	29	4		4	HYDIN	16	71025343	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	740434	71025343	19329410	307	55984											
WWOX	51741	broad.mit.edu	37	chr16	78253726	78253726	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttttctttctcttcctGttctcttgttttatcttgac	4	9	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78253726	C	C	78253726	1	2	52	0	1	0	0	0	0	0	0	0	17541	1392	48	4		4	WWOX	16	78253726	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	7228383	78253726	12101027	308	55985											
LRRC50	123872	broad.mit.edu	37	chr16	84182585	84182585	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcatatatcttgatctctAcagacctgatctcttttatt	5	9	3	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84182585	G	G	84182585	1	3	52	0	1	0	0	0	0	0	0	0	9096	406	14	5		5	LRRC50	16	84182585	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	5928859	84182585	6172168	309	55986											
OR1A1	8383	broad.mit.edu	37	chr17	3118156	3118158	+	5'Flank	DEL	ACC	-	-													ttgccaaagagagaaaaaaaAccaacaactcttttttcctt					rs66809596		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3118158	-	-	3118156	6	5	52	0	1	1	0	1	0	0	0	0	11043	58	2	0		0	OR1A1	17	3118156	5'Flank	DEL	ACC	TCGA-17-Z020-01A-01W-0746-08		3118156	78077054	310	55987											
KIF1C	10749	broad.mit.edu	37	chr17	4918584	4918584	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctttttctttttctttttCttttttttttgagacggagt	5	5	4	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4918584	T	T	4918584	1	4	52	0	1	0	0	0	0	0	0	0	8355	928	32	4		4	KIF1C	17	4918584	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1800428	4918584	76276626	311	55988											
TP53	7157	broad.mit.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578212	A	A	7578212	4	1	52	1	0	0	0	0	0	1	0	0	16505	1066	37	4	657	4	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2659628	7578212	73616998	312	55989											
DNAH2	146754	broad.mit.edu	37	chr17	7697704	7697704	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcatgggggctgcaggacGaggggagggtaggaggtgaa	21	6	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7697704	T	T	7697704	1	4	52	0	1	0	0	0	0	0	0	0	4642	1073	37	3		3	DNAH2	17	7697704	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	119492	7697704	73497506	313	55990											
DNAH2	146754	broad.mit.edu	37	chr17	7719956	7719956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacagaaggaggagcttcGcaagaagtctgaagagatgg	16	6	1	4			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7719956	T	T	7719956	3	4	52	1	0	0	0	0	1	0	0	0	4642	1087	38	3	10047	3	DNAH2	17	7719956	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	22252	7719956	73475254	314	55991											
MYH4	4622	broad.mit.edu	37	chr17	10356999	10356999	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccttctcaaccttggcCagtgtcagctcaaggtcatc	7	14	5	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10356999	A	A	10356999	2	1	52	1	0	0	0	0	0	0	0	1	10131	581	21	2		2	MYH4	17	10356999	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2637043	10356999	70838211	315	55992											
TAOK1	57551	broad.mit.edu	37	chr17	27849560	27849560	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggttagcctaagctttttGataacagggaggagaatgaa	12	4	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27849560	C	C	27849560	1	2	52	0	1	0	0	0	0	0	0	0	15666	1305	45	4		4	TAOK1	17	27849560	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	17492561	27849560	53345650	316	55993											
RAB11FIP4	84440	broad.mit.edu	37	chr17	29771877	29771877	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attacatagactttgatcccTccccttctcctttggatgag	6	12	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29771877	C	C	29771877	1	2	52	0	1	0	0	0	0	0	0	0	13004	1566	54	5		5	RAB11FIP4	17	29771877	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	1922317	29771877	51423333	317	55994											
TBC1D3	729873	broad.mit.edu	37	chr17	36356064	36356064	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtagctaggattacaggtGcataccaccacgcccagcta	10	12	0	0	rs143956138	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36356064	A	A	36356064	1	1	52	0	1	0	0	0	0	0	0	0	15739	1334	46	4		4	TBC1D3	17	36356064	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6584187	36356064	44839146	318	55995											
C17orf37	84299	broad.mit.edu	37	chr17	37885794	37885794	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacaggatgacgcagggaGgacggctgttggtgatcttt	16	7	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37885794	A	A	37885794	3	1	52	1	0	0	0	0	1	0	0	0	1870	1000	35	4	22	4	C17orf37	17	37885794	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1529730	37885794	43309416	319	55996											
UBE2Z	65264	broad.mit.edu	37	chr17	46990167	46990167	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgggtcatcacctcaCaattttgagatggggtttta	13	6	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46990167	T	T	46990167	1	4	52	0	1	0	0	0	0	0	0	0	17004	493	17	4		4	UBE2Z	17	46990167	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	9104373	46990167	34205043	320	55997											
AKAP1	8165	broad.mit.edu	37	chr17	55183751	55183771	+	In_Frame_Del	DEL	GCTTGGATAGAAATGAGGAGG	-	-													agaactgggcaatgaggagaGcttggatagaaatgaggagg					rs138803240	byFrequency	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55183771	-	-	55183751	7	5	52	1	0	1	0	1	0	0	0	0	445	971	34	0	928	0	AKAP1	17	55183751	In_Frame_Del	DEL	GCTTGGATAGAAATGAGGAGG	TCGA-17-Z020-01A-01W-0746-08	8193584	55183751	26011459	321	55998											
PITPNC1	26207	broad.mit.edu	37	chr17	65665757	65665757	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtctgggggcttcagaccaGagtggaacaatttgtacaca	13	8	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65665757	A	A	65665757	3	1	52	1	0	0	0	0	1	0	0	0	12044	942	33	4	622	4	PITPNC1	17	65665757	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	10482006	65665757	15529453	322	55999											
UNK	85451	broad.mit.edu	37	chr17	73814801	73814802	+	Frame_Shift_Ins	INS	-	C	C													cacctccagcctggcagctaINSccccccctagcccagtgggc							TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73814802	C	C	73814801	7	5	52	1	0	1	1	0	0	0	0	0	17126	391	14	0	1724	0	UNK	17	73814801	Frame_Shift_Ins	INS	-	TCGA-17-Z020-01A-01W-0746-08	8149044	73814801	7380409	323	56000											
ROCK1	6093	broad.mit.edu	37	chr18	18690844	18690844	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttgtccattttttcaaatcGagtctcaaaactgtccccag	6	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18690844	A	A	18690844	4	1	52	1	0	0	0	0	0	1	0	0	13628	1066	37	4	4168	4	ROCK1	18	18690844	Nonsense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08		18690844	59386404	324	56001											
DSG2	1829	broad.mit.edu	37	chr18	29121112	29121112	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatataaatttagaaataTatcaaggttaaccttatctg	5	5	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29121112	C	C	29121112	1	2	52	0	1	0	0	0	0	0	0	0	4817	1421	49	5		5	DSG2	18	29121112	Intron	SNP	T	TCGA-17-Z020-01A-01W-0746-08	10430268	29121112	48956136	325	56002											
SETBP1	26040	broad.mit.edu	37	chr18	42530630	42530630	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccttggcttctggaatcaCcatgagcagtgaagtagtta	11	8	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42530630	G	G	42530630	3	3	52	1	0	0	0	0	1	0	0	0	14242	507	18	4	1528	4	SETBP1	18	42530630	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	13409518	42530630	35546618	326	56003											
ZNF407	55628	broad.mit.edu	37	chr18	72627696	72627696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctggtatggtgaggttgtAtgcagcattggttcgaatcg	15	5	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72627696	G	G	72627696	1	3	52	0	1	0	0	0	0	0	0	0	18014	464	16	5		5	ZNF407	18	72627696	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	30097066	72627696	5449552	327	56004											
AP3D1	8943	broad.mit.edu	37	chr19	2109080	2109080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatcagcccctcactctcCttaccggaaaaatggtggtg	8	14	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2109080	A	A	2109080	1	1	52	0	1	0	0	0	0	0	0	0	748	696	24	2		2	AP3D1	19	2109080	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08		2109080	57019903	328	56005											
PTPRS	5802	broad.mit.edu	37	chr19	5183241	5183241	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcaaatccatgtctctaCaaaaaatacagaaaaatgag	6	7	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5183241	G	G	5183241	1	3	52	0	1	0	0	0	0	0	0	0	12919	493	17	4		4	PTPRS	19	5183241	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	3074161	5183241	53945742	329	56006											
MUC16	94025	broad.mit.edu	37	chr19	9027578	9027578	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcttcgatgggtgaaacctGcacagagaaggagggaggag	17	6	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9027578	C	C	9027578	1	2	52	0	1	0	0	0	0	0	0	0	10067	1334	46	4		4	MUC16	19	9027578	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3844337	9027578	50101405	330	56007											
MUC16	94025	broad.mit.edu	37	chr19	9074052	9074052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacgtggaagtggcaggaGgtatggttgtgaccaagaaa	16	4	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9074052	T	T	9074052	3	4	52	1	0	0	0	0	1	0	0	0	10067	1000	35	2	30457	2	MUC16	19	9074052	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	46474	9074052	50054931	331	56008											
COL5A3	50509	broad.mit.edu	37	chr19	10079106	10079106	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcacgcctggcaacccCtgatctcctttctcaccagc	6	20	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10079106	T	T	10079106	2	4	52	1	0	0	0	0	0	0	0	1	3730	680	24	4		4	COL5A3	19	10079106	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1005054	10079106	49049877	332	56009											
COL5A3	50509	broad.mit.edu	37	chr19	10079135	10079135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcaccagcttctcccgGggggccaatgagaccgatca	10	14	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10079135	T	T	10079135	3	4	52	1	0	0	0	0	1	0	0	0	3730	1232	43	2	1033	2	COL5A3	19	10079135	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	29	10079135	49049848	333	56010											
ZNF442	79973	broad.mit.edu	37	chr19	12462770	12462770	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctagttgtataatttcctgtCatcctaagaattgctccaca	5	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12462770	G	G	12462770	1	3	52	0	1	0	0	0	0	0	0	0	18042	841	29	4		4	ZNF442	19	12462770	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2383635	12462770	46666213	334	56011											
MYO9B	4650	broad.mit.edu	37	chr19	17308732	17308732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagccaggcgtggtggcGcttgcctgtaaccccagcta	12	13	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17308732	T	T	17308732	1	4	52	0	1	0	0	0	0	0	0	0	10179	1102	38	3		3	MYO9B	19	17308732	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	4845962	17308732	41820251	335	56012											
ZNF676	163223	broad.mit.edu	37	chr19	22375805	22375805	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcattcatgttgtctgtattCactctcacctacctgggggt	8	11	5	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22375805	A	A	22375805	1	1	52	0	1	0	0	0	0	0	0	0	18210	841	29	3		3	ZNF676	19	22375805	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	5067073	22375805	36753178	336	56013											
ZNF599	148103	broad.mit.edu	37	chr19	35251308	35251308	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcctggcctcaagttcCcttcctgaatttttattagc	6	11	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35251308	T	T	35251308	3	4	52	1	0	0	0	0	1	0	0	0	18156	623	22	4	1372	4	ZNF599	19	35251308	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	12875503	35251308	23877675	337	56014											
NPHS1	4868	broad.mit.edu	37	chr19	36334405	36334405	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttgaacatgcccgggaggAtgggattggcatcgacagtg	16	7	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36334405	T	T	36334405	3	4	52	1	0	0	0	0	1	0	0	0	10677	333	12	5	1474	5	NPHS1	19	36334405	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	1083097	36334405	22794578	338	56015											
NFKBID	84807	broad.mit.edu	37	chr19	36381356	36381356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggggttggcagcctgcaCggccaagtgcagaactgtct	15	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36381356	A	A	36381356	3	1	52	1	0	0	0	0	1	0	0	0	10474	536	19	3	310	3	NFKBID	19	36381356	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	46951	36381356	22747627	339	56016											
SARS2	54938	broad.mit.edu	37	chr19	39422912	39422912	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgcctaaaacaccaaaatTgagttgctactactctaaga	5	9	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39422912	A	A	39422912	1	1	52	0	1	0	0	0	0	0	0	0	13957	1827	63	5		5	SARS2	19	39422912	5'Flank	SNP	T	TCGA-17-Z020-01A-01W-0746-08	3041556	39422912	19706071	340	56017											
CYP2A7	1549	broad.mit.edu	37	chr19	41519111	41519111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtccagcagggaagatggGcattcatcaaataataataa	9	6	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41519111	A	A	41519111	1	1	52	0	1	0	0	0	0	0	0	0	4196	1218	42	4		4	CYP2A7	19	41519111	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	2096199	41519111	17609872	341	56018											
MEGF8	1954	broad.mit.edu	37	chr19	42861525	42861525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacccctgacctctagccCcatcggtgaccttgcccctc	8	19	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42861525	T	T	42861525	1	4	52	0	1	0	0	0	0	0	0	0	9556	638	22	4		4	MEGF8	19	42861525	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1342414	42861525	16267458	342	56019											
VASP	7408	broad.mit.edu	37	chr19	46027906	46027906	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgattactcggacctacaGagggtgaaacaggtaacttg	12	7	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46027906	C	C	46027906	3	2	52	1	0	0	0	0	1	0	0	0	17255	933	33	4	1077	4	VASP	19	46027906	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3166381	46027906	13101077	343	56020											
SYMPK	8189	broad.mit.edu	37	chr19	46351054	46351054	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggatgcggtccaggctgAtatcatgctcctggcgtcgg	16	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46351054	C	C	46351054	3	2	52	1	0	0	0	0	1	0	0	0	15558	333	12	5	3276	5	SYMPK	19	46351054	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	323148	46351054	12777929	344	56021											
NLRP5	126206	broad.mit.edu	37	chr19	56510960	56510960	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcatgctctgtgccagcCcttccgaccggctcacttgt	9	16	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56510960	A	A	56510960	1	1	52	0	1	0	0	0	0	0	0	0	10575	638	22	2		2	NLRP5	19	56510960	5'Flank	SNP	C	TCGA-17-Z020-01A-01W-0746-08	10159906	56510960	2618023	345	56022											
FAM113A	64773	broad.mit.edu	37	chr20	2816935	2816935	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctggaatggatgattcatCtctgcccagtcctcaatcca	7	14	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2816935	A	A	2816935	3	1	52	1	0	0	0	0	1	0	0	0	5447	912	32	3	505	3	FAM113A	20	2816935	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08		2816935	60208585	346	56023											
BTBD3	22903	broad.mit.edu	37	chr20	11900471	11900471	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtcgaacctgctgcttttCtcgctatgctgaagtaagca	9	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11900471	T	T	11900471	3	4	52	1	0	0	0	0	1	0	0	0	1554	913	32	4	533	4	BTBD3	20	11900471	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	9083536	11900471	51125049	347	56024											
OTOR	56914	broad.mit.edu	37	chr20	16729235	16729235	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccactaatagcataaaatCgaattatactttgaagtgaa	5	6	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16729235	T	T	16729235	1	4	52	0	1	0	0	0	0	0	0	0	11402	899	31	4		4	OTOR	20	16729235	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	4828764	16729235	46296285	348	56025											
DNMT3B	1789	broad.mit.edu	37	chr20	31376692	31376692	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaataggggacctcgtGtggggaaagatcaagggctt	16	5	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31376692	T	T	31376692	2	4	52	1	0	0	0	0	0	0	0	1	4717	1364	48	3		3	DNMT3B	20	31376692	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	14647457	31376692	31648828	349	56026											
C20orf186	149954	broad.mit.edu	37	chr20	31676596	31676596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaacaatttgcctgggtGgcctgtctagtcagtccaag	11	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31676596	T	T	31676596	1	4	52	0	1	0	0	0	0	0	0	0	2120	1363	47	2		2	C20orf186	20	31676596	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	299904	31676596	31348924	350	56027											
UQCC	55245	broad.mit.edu	37	chr20	33969780	33969780	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctattatctttgtgaaagCaccaaccttctcctcaacag	4	12	4	1	rs143657027		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33969780	T	T	33969780	3	4	52	1	0	0	0	0	1	0	0	0	17141	710	25	4	653	4	UQCC	20	33969780	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2293184	33969780	29055740	351	56028											
CTNNBL1	56259	broad.mit.edu	37	chr20	36447329	36447329	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaatatacttttcatatgtCaagttttctttctgttgttc	5	6	4	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36447329	G	G	36447329	1	3	52	0	1	0	0	0	0	0	0	0	4052	841	29	4		4	CTNNBL1	20	36447329	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	2477549	36447329	26578191	352	56029											
SPINLW1	57119	broad.mit.edu	37	chr20	44174238	44174238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcagaaggtgaggacagGgggaggaggggttggttatt	21	2	0	2	rs2231834	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44174238	A	A	44174238	1	1	52	0	1	0	0	0	0	0	0	0	15185	1247	43	4		4	SPINLW1	20	44174238	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	7726909	44174238	18851282	353	56030											
ZMYND8	23613	broad.mit.edu	37	chr20	45966410	45966410	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtaatttgcatatcatgcCatgaagtactcagaaaatat	6	6	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45966410	T	T	45966410	1	4	52	0	1	0	0	0	0	0	0	0	17837	609	21	4		4	ZMYND8	20	45966410	Intron	SNP	C	TCGA-17-Z020-01A-01W-0746-08	1792172	45966410	17059110	354	56031											
KCNG1	3755	broad.mit.edu	37	chr20	49620825	49620825	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcccggggtgctcctgggGaccatgtcgccatagcccac	14	15	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49620825	T	T	49620825	2	4	52	1	0	0	0	0	0	0	0	1	8097	1161	41	3		3	KCNG1	20	49620825	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	3654415	49620825	13404695	355	56032											
GATA5	140628	broad.mit.edu	37	chr20	61039976	61039976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggggccgtggaggggaaGgcaaagtcctcaggctcgaa	17	9	1	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61039976	T	T	61039976	2	4	52	1	0	0	0	0	0	0	0	1	6319	987	35	2		2	GATA5	20	61039976	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08	11419151	61039976	1985544	356	56033											
BAGE2	85319	broad.mit.edu	37	chr21	11064649	11064649	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacactgttgctatctttGaagataaaaagagccaggag	9	6	1	3	rs76731709		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11064649	C	C	11064649	1	2	52	0	1	0	0	0	0	0	0	0	1297	1305	45	4		4	BAGE2	21	11064649	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08		11064649	37065246	357	56034											
BAGE2	85319	broad.mit.edu	37	chr21	11074836	11074836	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggattgcaggtgactgctatAatgcctggctaatttttgta	11	6	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11074836	G	G	11074836	1	3	52	0	1	0	0	0	0	0	0	0	1297	377	13	5		5	BAGE2	21	11074836	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	10187	11074836	37055059	358	56035											
CHODL	140578	broad.mit.edu	37	chr21	19331339	19331339	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcctctaaagacaaaactAcacaagttccttctatgtta	4	10	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19331339	C	C	19331339	1	2	52	0	1	0	0	0	0	0	0	0	3395	406	14	5		5	CHODL	21	19331339	Intron	SNP	A	TCGA-17-Z020-01A-01W-0746-08	8256503	19331339	28798556	359	56036											
CSTB	1476	broad.mit.edu	37	chr21	45194582	45194582	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgaccacctggctcttgaatGacacggccttaaacacaggg	10	13	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45194582	A	A	45194582	3	1	52	1	0	0	0	0	1	0	0	0	4016	1294	45	4	179	4	CSTB	21	45194582	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	25863243	45194582	2935313	360	56037											
UFD1L	7353	broad.mit.edu	37	chr22	19463058	19463058	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatggacacagagaagcagCggtactgtgtggagaagcgg	17	7	0	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19463058	T	T	19463058	3	4	52	1	0	0	0	0	1	0	0	0	17061	768	27	4	896	4	UFD1L	22	19463058	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08		19463058	31841508	361	56038											
SF3A1	10291	broad.mit.edu	37	chr22	30741134	30741134	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgaactcaaactcaggagGaggctctttgggcacgatgg	13	8	3	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30741134	A	A	30741134	3	1	52	1	0	0	0	0	1	0	0	0	14259	1174	41	4	1994	4	SF3A1	22	30741134	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	11278076	30741134	20563432	362	56039											
SEC14L3	266629	broad.mit.edu	37	chr22	30857437	30857437	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggaaaactccgaagccgAtgtccgcaccatcagatgag	10	12	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30857437	G	G	30857437	3	3	52	1	0	0	0	0	1	0	0	0	14096	333	12	5	269	5	SEC14L3	22	30857437	Missense_Mutation	SNP	A	TCGA-17-Z020-01A-01W-0746-08	116303	30857437	20447129	363	56040											
APOL1	8542	broad.mit.edu	37	chr22	36653586	36653586	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctgcccaaagcagcagaaGaggtcacgtggagtcccccg	13	13	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36653586	A	A	36653586	1	1	52	0	1	0	0	0	0	0	0	0	807	957	33	4		4	APOL1	22	36653586	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	5796149	36653586	14650980	364	56041											
TTC38	55020	broad.mit.edu	37	chr22	46685772	46685772	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcggccttaaactgcacctCcagcgtccataagaacgtag	9	14	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46685772	T	T	46685772	3	4	52	1	0	0	0	0	1	0	0	0	16832	855	30	4	1342	4	TTC38	22	46685772	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	10032186	46685772	4618794	365	56042											
FAM47A	158724	broad.mit.edu	37	chrX	34148898	34148898	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgagcggagactggacgtccGacgagtcttgggaggctgcg	18	10	1	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34148898	T	T	34148898	2	4	52	1	0	0	0	0	0	0	0	1	5620	1057	37	3		3	FAM47A	23	34148898	Silent	SNP	G	TCGA-17-Z020-01A-01W-0746-08		34148898	121121662	366	56043											
FAM47A	158724	broad.mit.edu	37	chrX	34149052	34149052	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttccttagttttcttcacCcgggcctcacaacgatccca	7	15	3	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34149052	T	T	34149052	2	4	52	1	0	0	0	0	0	0	0	1	5620	610	22	4		4	FAM47A	23	34149052	Silent	SNP	C	TCGA-17-Z020-01A-01W-0746-08	154	34149052	121121508	367	56044											
CXorf59	286464	broad.mit.edu	37	chrX	36091390	36091390	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaggcacactacttttttGagaaggttgtaaatgcagca	9	7	0	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36091390	A	A	36091390	3	1	52	1	0	0	0	0	1	0	0	0	4148	1291	45	4	335	4	CXorf59	23	36091390	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	1942338	36091390	119179170	368	56045											
CXorf59	286464	broad.mit.edu	37	chrX	36091419	36091419	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaaatgcagcacagacctgGttcagtctctttggctggcc	11	11	2	1			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36091419	C	C	36091419	3	2	52	1	0	0	0	0	1	0	0	0	4148	1270	44	4	364	4	CXorf59	23	36091419	Missense_Mutation	SNP	G	TCGA-17-Z020-01A-01W-0746-08	29	36091419	119179141	369	56046											
EBP	10682	broad.mit.edu	37	chrX	48385717	48385717	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactgggcactagaggggttGatgggggatccacagacaca	15	9	0	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48385717	C	C	48385717	1	2	52	0	1	0	0	0	0	0	0	0	4926	1305	45	4		4	EBP	23	48385717	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	12294298	48385717	106884843	370	56047											
WNK3	65267	broad.mit.edu	37	chrX	54321219	54321219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctttattggcgtcaccCggtctctaatggatttagca	8	10	4	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54321219	A	A	54321219	3	1	52	1	0	0	0	0	1	0	0	0	17506	652	23	1	4010	1	WNK3	23	54321219	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	5935502	54321219	100949341	371	56048											
KLHL13	90293	broad.mit.edu	37	chrX	117064211	117064211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggaagggaggaaGgaaggaaggaaggaaggaag	22	0	0	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117064211	A	A	117064211	1	1	52	0	1	0	0	0	0	0	0	0	8440	1015	35	4		4	KLHL13	23	117064211	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	62742992	117064211	38206349	372	56049											
BCORL1	63035	broad.mit.edu	37	chrX	129173013	129173013	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attacaccaaggttacctggGggtcagctcagttttttccc	9	11	2	0			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129173013	A	A	129173013	1	1	52	0	1	0	0	0	0	0	0	0	1392	1247	43	4		4	BCORL1	23	129173013	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	12108802	129173013	26097547	373	56050											
GPR112	139378	broad.mit.edu	37	chrX	135455443	135455443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgataccacctttggccctGtgaccccaaattatctcaaa	5	13	1	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135455443	T	T	135455443	1	4	52	0	1	0	0	0	0	0	0	0	6694	1392	48	3		3	GPR112	23	135455443	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	6282430	135455443	19815117	374	56051											
MAGEC3	139081	broad.mit.edu	37	chrX	140969493	140969493	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagggcatgccccagaacCgcctcctgattcttattctg	9	14	2	2			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140969493	T	T	140969493	3	4	52	1	0	0	0	0	1	0	0	0	9274	652	23	4	834	4	MAGEC3	23	140969493	Missense_Mutation	SNP	C	TCGA-17-Z020-01A-01W-0746-08	5514050	140969493	14301067	375	56052											
VAMP7	6845	broad.mit.edu	37	chrX	155149585	155149585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatggagtctgatgtaaagtGgagaaactatggatgatggc	14	3	1	3			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155149585	A	A	155149585	1	1	52	0	1	0	0	0	0	0	0	0	17244	1363	47	4		4	VAMP7	23	155149585	Intron	SNP	G	TCGA-17-Z020-01A-01W-0746-08	14180092	155149585	120975	376	56053											
MTOR	2475	broad.mit.edu	37	chr1	11175493	11175493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgtgcaggatcttcccaCtcagacggtccagcatcagg	10	13	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11175493	A	A	11175493	3	1	53	1	0	0	0	0	1	0	0	0	10048	565	20	3	632	3	MTOR	1	11175493	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08		11175493	238075128	1	56054											
NBPF1	55672	broad.mit.edu	37	chr1	16904449	16904449	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacacataacaccataaGgccatgaaggaaatatgccc	8	10	0	2	rs80258438		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16904449	A	A	16904449	1	1	53	0	1	0	0	0	0	0	0	0	10286	1015	35	4		4	NBPF1	1	16904449	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5728956	16904449	232346172	2	56055											
PADI1	29943	broad.mit.edu	37	chr1	17555341	17555341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgaggggtttgggggCccagtttgcaggctccaggg	20	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17555341	A	A	17555341	1	1	53	0	1	0	0	0	0	0	0	0	11471	754	26	3		3	PADI1	1	17555341	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	650892	17555341	231695280	3	56056											
UBR4	23352	broad.mit.edu	37	chr1	19484211	19484211	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaacgcagtggactttttCccacagagggctaatccgaa	10	10	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19484211	A	A	19484211	1	1	53	0	1	0	0	0	0	0	0	0	17030	870	30	3		3	UBR4	1	19484211	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1928870	19484211	229766410	4	56057											
TMCO4	255104	broad.mit.edu	37	chr1	20063897	20063897	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatctcctgcagacagaagTagatgactctggctcccagg	10	13	2	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20063897	A	A	20063897	3	1	53	1	0	0	0	0	1	0	0	0	16121	1638	57	5	688	5	TMCO4	1	20063897	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	579686	20063897	229186724	5	56058											
SESN2	83667	broad.mit.edu	37	chr1	28599220	28599220	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcctccctgagggggatgcAgatggcagccctgcccccca	12	16	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28599220	T	T	28599220	2	4	53	1	0	0	0	0	0	0	0	1	14238	175	7	5		5	SESN2	1	28599220	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	8535323	28599220	220651401	6	56059											
HIVEP3	59269	broad.mit.edu	37	chr1	42016975	42016975	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttattgaggatttttacatCgatgttcatcagggatattg	9	4	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42016975	T	T	42016975	1	4	53	0	1	0	0	0	0	0	0	0	7255	899	31	4		4	HIVEP3	1	42016975	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	13417755	42016975	207233646	7	56060											
TIE1	7075	broad.mit.edu	37	chr1	43777628	43777628	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcttctagaagaggtgGgggctgaataatgtgtgctt	16	5	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43777628	A	A	43777628	1	1	53	0	1	0	0	0	0	0	0	0	16016	1247	43	4		4	TIE1	1	43777628	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1760653	43777628	205472993	8	56061											
PTPRF	5792	broad.mit.edu	37	chr1	44070747	44070747	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctttccagtcctaacccAtgtgcatccggctgtggagc	10	13	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44070747	T	T	44070747	1	4	53	0	1	0	0	0	0	0	0	0	12909	232	8	5		5	PTPRF	1	44070747	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	293119	44070747	205179874	9	56062											
AGBL4	84871	broad.mit.edu	37	chr1	50052697	50052697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctactttgagtggatcaCctgaggtcaggagttcaaga	11	8	4	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50052697	A	A	50052697	1	1	53	0	1	0	0	0	0	0	0	0	377	522	18	3		3	AGBL4	1	50052697	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5981950	50052697	199197924	10	56063											
EPS15	2060	broad.mit.edu	37	chr1	51854721	51854721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccaatatccttgatgaaCattgatgcaaaaatcctcaa	5	9	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51854721	A	A	51854721	1	1	53	0	1	0	0	0	0	0	0	0	5234	493	17	3		3	EPS15	1	51854721	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1802024	51854721	197395900	11	56064											
DAB1	1600	broad.mit.edu	37	chr1	57476947	57476947	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaggggctggggttggagcTacacagagaccacagaaaaa	14	8	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57476947	A	A	57476947	5	1	53	1	0	0	0	0	0	0	1	0	4250	1536	53	5	232	5	DAB1	1	57476947	Splice_Site	SNP	T	TCGA-17-Z021-01A-01W-0746-08	5622226	57476947	191773674	12	56065											
LEPR	3953	broad.mit.edu	37	chr1	66074555	66074556	+	Missense_Mutation	DNP	GG	AT	AT													ttcaattccagattcgctatGgtttaagtggaaaagaagta							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	66074556	AT	AT	66074555	3	1	53	1	0	0	0	0	1	0	0	0	8800	1348	47	4	1761	4	LEPR	1	66074555	Missense_Mutation	DNP	GG	TCGA-17-Z021-01A-01W-0746-08	8597608	66074555	183176066	13	56066											
PDE4B	5142	broad.mit.edu	37	chr1	66837971	66837971	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagcaccatcacaataacaGatgtgtcatcttatttttct	4	10	4	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66837971	T	T	66837971	1	4	53	0	1	0	0	0	0	0	0	0	11734	957	33	3		3	PDE4B	1	66837971	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	763416	66837971	182412650	14	56067											
LRRC7	57554	broad.mit.edu	37	chr1	70494020	70494020	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaaaatatgaacacaAgtggccggtagccccaaagg	11	8	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70494020	T	T	70494020	3	4	53	1	0	0	0	0	1	0	0	0	9107	72	3	5	1909	5	LRRC7	1	70494020	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3656049	70494020	178756601	15	56068											
TNNI3K	51086	broad.mit.edu	37	chr1	74874966	74874966	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacagagcccaaactccccGctgttatgacaaagagccat	8	13	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74874966	A	A	74874966	1	1	53	0	1	0	0	0	0	0	0	0	16452	1102	38	4		4	TNNI3K	1	74874966	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4380946	74874966	174375655	16	56069											
RABGGTB	5876	broad.mit.edu	37	chr1	76254798	76254798	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttaatctctttataacttGttaccagttcaaatgacaga	5	7	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76254798	A	A	76254798	1	1	53	0	1	0	0	0	0	0	0	0	13076	1392	48	4		4	RABGGTB	1	76254798	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1379832	76254798	172995823	17	56070											
MSH4	4438	broad.mit.edu	37	chr1	76262571	76262571	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttagtgcgtcggcgcgcAgttctcccgcccgtttcagc	12	15	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76262571	G	G	76262571	1	3	53	0	1	0	0	0	0	0	0	0	9966	203	7	5		5	MSH4	1	76262571	5'Flank	SNP	A	TCGA-17-Z021-01A-01W-0746-08	7773	76262571	172988050	18	56071											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76774481	76774481	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttagaattgcaaaacattGcacttttatatacatttatc	3	6	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76774481	C	C	76774481	1	2	53	0	1	0	0	0	0	0	0	0	15343	1334	46	4		4	ST6GALNAC3	1	76774481	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	511910	76774481	172476140	19	56072											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77074290	77074290	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgagctggaaatgtgtgtGtgtgtgtgtgtgtgtgtgtg	18	3	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77074290	A	A	77074290	1	1	53	0	1	0	0	0	0	0	0	0	15343	1392	48	4		4	ST6GALNAC3	1	77074290	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	299809	77074290	172176331	20	56073											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77510321	77510321	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggcacagggaagaagAtgcaggggagggtgaggata	18	4	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77510321	T	T	77510321	1	4	53	0	1	0	0	0	0	0	0	0	15345	348	12	5		5	ST6GALNAC5	1	77510321	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	436031	77510321	171740300	21	56074											
ELTD1	64123	broad.mit.edu	37	chr1	79403637	79403637	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcccaaactacaaatgtAtccctttgaacaaaattatt	3	9	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79403637	T	T	79403637	3	4	53	1	0	0	0	0	1	0	0	0	5126	446	16	5	1497	5	ELTD1	1	79403637	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1893316	79403637	169846984	22	56075											
LPHN2	23266	broad.mit.edu	37	chr1	82002234	82002234	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacttctattctcatctctAtcttcagaatttgctttgac	3	11	5	2	rs115210610	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82002234	G	G	82002234	1	3	53	0	1	0	0	0	0	0	0	0	9003	464	16	5		5	LPHN2	1	82002234	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2598597	82002234	167248387	23	56076											
CLCA1	1179	broad.mit.edu	37	chr1	86957029	86957029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccctttcatcaggaaatgGagctgtctctcagcgctcca	10	13	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86957029	T	T	86957029	3	4	53	1	0	0	0	0	1	0	0	0	3488	1174	41	3	1473	3	CLCA1	1	86957029	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4954795	86957029	162293592	24	56077											
RPAP2	79871	broad.mit.edu	37	chr1	92846455	92846455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggattgtgttttattttGgtttttattcttcatttgtt	8	2	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92846455	T	T	92846455	1	4	53	0	1	0	0	0	0	0	0	0	13653	1363	47	2		2	RPAP2	1	92846455	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5889426	92846455	156404166	25	56078											
PALMD	54873	broad.mit.edu	37	chr1	100154979	100154979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaattcttcacccacttGtcaggaggacgaggaagatg	11	10	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100154979	T	T	100154979	3	4	53	1	0	0	0	0	1	0	0	0	11505	1377	48	3	1189	3	PALMD	1	100154979	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7308524	100154979	149095642	26	56079											
VCAM1	7412	broad.mit.edu	37	chr1	101197962	101197962	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcaagctaacaagcgtctCtgccttttcagttgccccca	8	14	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101197962	A	A	101197962	1	1	53	0	1	0	0	0	0	0	0	0	17264	928	32	3		3	VCAM1	1	101197962	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1042983	101197962	148052659	27	56080											
AMY2A	279	broad.mit.edu	37	chr1	104160474	104160474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagagatagctgcctataCcaagattcaagaatctttta	6	8	3	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104160474	A	A	104160474	1	1	53	0	1	0	0	0	0	0	0	0	594	522	18	3		3	AMY2A	1	104160474	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2962512	104160474	145090147	28	56081											
IGSF3	3321	broad.mit.edu	37	chr1	117188927	117188927	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccggcttctggtgaaacGccattatcgttatttttagg	10	8	1	1	rs144784443	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117188927	A	A	117188927	1	1	53	0	1	0	0	0	0	0	0	0	7671	1102	38	4		4	IGSF3	1	117188927	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	13028453	117188927	132061694	29	56082											
PDE4DIP	9659	broad.mit.edu	37	chr1	144866543	144866543	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatctgtgaagctctgcctAaaagtccctaaatagagcca	7	10	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144866543	G	G	144866543	1	3	53	0	1	0	0	0	0	0	0	0	11737	377	13	5		5	PDE4DIP	1	144866543	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	27677616	144866543	104384078	30	56083											
NBPF9	400818	broad.mit.edu	37	chr1	145100672	145100672	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctaattccatcttgcctttCttttttttttttttttgaga	3	7	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145100672	T	T	145100672	1	4	53	0	1	0	0	0	0	0	0	0	10294	928	32	4		4	NBPF9	1	145100672	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	234129	145100672	104149949	31	56084											
NBPF9	400818	broad.mit.edu	37	chr1	145111361	145111361	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgaccagctagctaatttCggtatttttggtagagatgg	11	6	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145111361	T	T	145111361	1	4	53	0	1	0	0	0	0	0	0	0	10294	899	31	4		4	NBPF9	1	145111361	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	10689	145111361	104139260	32	56085											
NBPF9	400818	broad.mit.edu	37	chr1	145114673	145114673	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcagttgctaattcagacGtggctgtcatgcctgtgtta	11	8	3	1	rs112458770		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145114673	A	A	145114673	1	1	53	0	1	0	0	0	0	0	0	0	10294	1160	40	4		4	NBPF9	1	145114673	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3312	145114673	104135948	33	56086											
NBPF10	100132406	broad.mit.edu	37	chr1	145214857	145214857	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggggtgattgctcaggtaAagcatcttagccctacttgt	11	9	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145214857	T	T	145214857	1	4	53	0	1	0	0	0	0	0	0	0	10287	29	1	5		5	NBPF10	1	145214857	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	100184	145214857	104035764	34	56087											
NBPF10	100132406	broad.mit.edu	37	chr1	145251035	145251035	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagctggaagccatcattctCagcaaactaacacaggaaca	7	11	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145251035	G	G	145251035	1	3	53	0	1	0	0	0	0	0	0	0	10287	841	29	4		4	NBPF10	1	145251035	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	36178	145251035	103999586	35	56088											
HRNR	388697	broad.mit.edu	37	chr1	152193257	152193257	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccagacccatgctgaccaTagctggaagacgaacctgag	10	12	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152193257	C	C	152193257	3	2	53	1	0	0	0	0	1	0	0	0	7426	1406	49	5	7708	5	HRNR	1	152193257	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	6942222	152193257	97057364	36	56089											
FLG	2312	broad.mit.edu	37	chr1	152281902	152281902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccctgccttcctcctctGcttgaccctgggtgtccacg	9	17	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281902	T	T	152281902	3	4	53	1	0	0	0	0	1	0	0	0	5979	1310	46	3	6729	3	FLG	1	152281902	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	88645	152281902	96968719	37	56090											
FLG	2312	broad.mit.edu	37	chr1	152281970	152281970	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgcctggagctgtctcGtgcctgctcgtggcgggatc	16	11	1	1	rs149105551	byFrequency	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281970	T	T	152281970	2	4	53	1	0	0	0	0	0	0	0	1	5979	1153	40	3		3	FLG	1	152281970	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	68	152281970	96968651	38	56091											
FLG2	388698	broad.mit.edu	37	chr1	152328290	152328290	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgacctgagcctgatccatAttggccaaagccagtggatt	10	11	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152328290	G	G	152328290	3	3	53	1	0	0	0	0	1	0	0	0	5980	449	16	5	5207	5	FLG2	1	152328290	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	46320	152328290	96922331	39	56092											
ARHGEF2	9181	broad.mit.edu	37	chr1	155921420	155921420	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtggggacagtaggatccgGagacatacttgaatgtagac	14	6	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155921420	C	C	155921420	1	2	53	0	1	0	0	0	0	0	0	0	905	1189	41	4		4	ARHGEF2	1	155921420	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3593130	155921420	93329201	40	56093											
LMNA	4000	broad.mit.edu	37	chr1	156104971	156104971	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctaaccctttgtcctccCctccagctggacaatgccag	7	17	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156104971	T	T	156104971	1	4	53	0	1	0	0	0	0	0	0	0	8922	638	22	4		4	LMNA	1	156104971	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	183551	156104971	93145650	41	56094											
FCRL2	79368	broad.mit.edu	37	chr1	157738454	157738454	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagtcacctgtcccccgggGgcccggatctccaagcttac	10	17	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157738454	C	C	157738454	2	2	53	1	0	0	0	0	0	0	0	1	5852	1219	43	4		4	FCRL2	1	157738454	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1633483	157738454	91512167	42	56095											
SPTA1	6708	broad.mit.edu	37	chr1	158596608	158596608	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttctcaaacccaagggacCctgaacctgacacatcatac	6	14	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158596608	G	G	158596608	1	3	53	0	1	0	0	0	0	0	0	0	15234	638	22	4		4	SPTA1	1	158596608	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	858154	158596608	90654013	43	56096											
SPTA1	6708	broad.mit.edu	37	chr1	158612347	158612347	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctctgaagggaaaatgAaacagaaattatattatctt	6	5	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158612347	C	C	158612347	1	2	53	0	1	0	0	0	0	0	0	0	15234	261	9	5		5	SPTA1	1	158612347	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	15739	158612347	90638274	44	56097											
SPTA1	6708	broad.mit.edu	37	chr1	158655168	158655168	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagattctgttacttgctAgttctcaaatatttaacatg	5	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158655168	T	T	158655168	1	4	53	0	1	0	0	0	0	0	0	0	15234	435	15	5		5	SPTA1	1	158655168	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	42821	158655168	90595453	45	56098											
DARC	2532	broad.mit.edu	37	chr1	159175743	159175743	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccctggggctcactgtgGgaatttggggagtggctgcc	16	10	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159175743	A	A	159175743	3	1	53	1	0	0	0	0	1	0	0	0	4273	1233	43	4	547	4	DARC	1	159175743	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	520575	159175743	90074878	46	56099											
LMX1A	4009	broad.mit.edu	37	chr1	165182944	165182944	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcctctgttgagttgtcaaGatggttctcggacgtttggg	14	8	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165182944	T	T	165182944	2	4	53	1	0	0	0	0	0	0	0	1	8935	932	33	3		3	LMX1A	1	165182944	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6007201	165182944	84067677	47	56100											
ILDR2	387597	broad.mit.edu	37	chr1	166904656	166904656	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggatggagtaagggccGgggacaccggagacagaggg	22	6	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166904656	T	T	166904656	2	4	53	1	0	0	0	0	0	0	0	1	7780	1103	39	1		1	ILDR2	1	166904656	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1721712	166904656	82345965	48	56101											
DNM3	26052	broad.mit.edu	37	chr1	172292456	172292456	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctctttcttttccttgcgGctacatgcataggggaacaa	8	10	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172292456	A	A	172292456	1	1	53	0	1	0	0	0	0	0	0	0	4713	1218	42	4		4	DNM3	1	172292456	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5387800	172292456	76958165	49	56102											
SLC9A11	284525	broad.mit.edu	37	chr1	173502880	173502880	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgattccaataaccaggatAaaaaattccaaagtattcca	4	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173502880	G	G	173502880	2	3	53	1	0	0	0	0	0	0	0	1	14825	359	13	5		5	SLC9A11	1	173502880	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1210424	173502880	75747741	50	56103											
KLHL20	27252	broad.mit.edu	37	chr1	173735542	173735542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtaatcctagcactttGgaaggccaaggcaggtggat	12	9	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173735542	T	T	173735542	1	4	53	0	1	0	0	0	0	0	0	0	8446	1363	47	2		2	KLHL20	1	173735542	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	232662	173735542	75515079	51	56104											
ASTN1	460	broad.mit.edu	37	chr1	177036703	177036703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcagaatggtcttctcaCtgaaactattaacagcggta	8	8	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177036703	A	A	177036703	1	1	53	0	1	0	0	0	0	0	0	0	1068	580	20	3		3	ASTN1	1	177036703	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3301161	177036703	72213918	52	56105											
FAM20B	9917	broad.mit.edu	37	chr1	179012885	179012885	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcagtgaagaaatggaccAatgtgtataatcatggaatc	9	6	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179012885	T	T	179012885	1	4	53	0	1	0	0	0	0	0	0	0	5585	145	5	5		5	FAM20B	1	179012885	5'UTR	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1976182	179012885	70237736	53	56106											
CACNA1E	777	broad.mit.edu	37	chr1	181708193	181708193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggttgtggagacagtggCagtgggggcactgccatgat	18	6	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181708193	T	T	181708193	1	4	53	0	1	0	0	0	0	0	0	0	2568	725	25	4		4	CACNA1E	1	181708193	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2695308	181708193	67542428	54	56107											
RNASEL	6041	broad.mit.edu	37	chr1	182555970	182555970	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgccacctgctaccactttTagccttttccttgagaaaat	5	12	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182555970	C	C	182555970	1	2	53	0	1	0	0	0	0	0	0	0	13527	1769	61	5		5	RNASEL	1	182555970	5'UTR	SNP	T	TCGA-17-Z021-01A-01W-0746-08	847777	182555970	66694651	55	56108											
RGS18	64407	broad.mit.edu	37	chr1	192150409	192150409	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttatagttatattatttAttttcttgatagatggacta	5	2	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192150409	G	G	192150409	1	3	53	0	1	0	0	0	0	0	0	0	13409	464	16	5		5	RGS18	1	192150409	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	9594439	192150409	57100212	56	56109											
CRB1	23418	broad.mit.edu	37	chr1	197404113	197404113	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacgaagtgaccctttcCatgacagacccactgtccca	8	15	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197404113	A	A	197404113	2	1	53	1	0	0	0	0	0	0	0	1	3880	581	21	2		2	CRB1	1	197404113	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5253704	197404113	51846508	57	56110											
KIF21B	23046	broad.mit.edu	37	chr1	200967546	200967546	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacggtcgcgctccagctgTgtgtctcggatcttgttctg	12	12	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200967546	A	A	200967546	2	1	53	1	0	0	0	0	0	0	0	1	8359	1683	59	5		5	KIF21B	1	200967546	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	3563433	200967546	48283075	58	56111											
CACNA1S	779	broad.mit.edu	37	chr1	201038378	201038378	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggaggagggggcaacagTatcagcagcagcagcagcat	16	8	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201038378	C	C	201038378	1	2	53	0	1	0	0	0	0	0	0	0	2573	1653	57	5		5	CACNA1S	1	201038378	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	70832	201038378	48212243	59	56112											
PIK3C2B	5287	broad.mit.edu	37	chr1	204393646	204393647	+	3'UTR	DNP	CA	AG	AG													aattaagatatccacccaccCacccccaaaatgctacttca							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	204393647	AG	AG	204393646	1	1	53	0	1	0	0	0	0	0	0	0	12005	609	21	2		2	PIK3C2B	1	204393646	3'UTR	DNP	CA	TCGA-17-Z021-01A-01W-0746-08	3355268	204393646	44856975	60	56113											
PIK3C2B	5287	broad.mit.edu	37	chr1	204415206	204415206	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcgagcaccagggggagCgagctcacctccgagtggca	16	13	1	0	rs115140514	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204415206	G	G	204415206	2	3	53	1	0	0	0	0	0	0	0	1	12005	755	27	4		4	PIK3C2B	1	204415206	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	21560	204415206	44835415	61	56114											
NFASC	23114	broad.mit.edu	37	chr1	204966249	204966249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggccgtgtgtccaggctGggcacagccaaaccaaccag	15	13	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204966249	T	T	204966249	1	4	53	0	1	0	0	0	0	0	0	0	10454	1363	47	2		2	NFASC	1	204966249	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	551043	204966249	44284372	62	56115											
USH2A	7399	broad.mit.edu	37	chr1	215931888	215931888	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcttatctctaattaattCctttaaaatgtttacacaca	1	8	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215931888	A	A	215931888	1	1	53	0	1	0	0	0	0	0	0	0	17162	870	30	3		3	USH2A	1	215931888	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	10965639	215931888	33318733	63	56116											
LYST	1130	broad.mit.edu	37	chr1	235973558	235973558	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttaaaaaatgatgcagcAgatggggccttctatgctta	10	6	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235973558	G	G	235973558	3	3	53	1	0	0	0	0	1	0	0	0	9216	188	7	5	11041	5	LYST	1	235973558	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	20041670	235973558	13277063	64	56117											
MTR	4548	broad.mit.edu	37	chr1	237013866	237013866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtcatggctcaaatttGtcccatgggtctaatgaatg	9	9	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237013866	T	T	237013866	1	4	53	0	1	0	0	0	0	0	0	0	10052	1392	48	3		3	MTR	1	237013866	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1040308	237013866	12236755	65	56118											
ZP4	57829	broad.mit.edu	37	chr1	238053264	238053264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactggcatgatgtagtgGgagtcctggagagacaggcc	15	9	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053264	T	T	238053264	2	4	53	1	0	0	0	0	0	0	0	1	18347	1219	43	2		2	ZP4	1	238053264	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1039398	238053264	11197357	66	56119											
WDR64	128025	broad.mit.edu	37	chr1	241904971	241904971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatccataattagggtaaGtacctattggcttttcaaac	7	7	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241904971	T	T	241904971	1	4	53	0	1	0	0	0	0	0	0	0	17442	1044	36	3		3	WDR64	1	241904971	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3851707	241904971	7345650	67	56120											
KIF26B	55083	broad.mit.edu	37	chr1	245848849	245848849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccagcgaccccgactactCctccagcagcgagcagtcct	9	18	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245848849	A	A	245848849	3	1	53	1	0	0	0	0	1	0	0	0	8365	855	30	3	2610	3	KIF26B	1	245848849	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3943878	245848849	3401772	68	56121											
KIF26B	55083	broad.mit.edu	37	chr1	245848860	245848860	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgactactcctccagcagcGagcagtcctgcgacaccgtc	9	18	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245848860	A	A	245848860	3	1	53	1	0	0	0	0	1	0	0	0	8365	1059	37	4	2621	4	KIF26B	1	245848860	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11	245848860	3401761	69	56122											
NLRP3	114548	broad.mit.edu	37	chr1	247588857	247588857	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgacaccttgatatggtGcagtgtgtcctcccaagctc	11	13	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247588857	T	T	247588857	2	4	53	1	0	0	0	0	0	0	0	1	10573	1306	46	3		3	NLRP3	1	247588857	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1739997	247588857	1661764	70	56123											
OR2AK2	391191	broad.mit.edu	37	chr1	248128876	248128876	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactttctgctcagtcagctCtccatcgttgacctcatgta	6	13	5	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248128876	A	A	248128876	2	1	53	1	0	0	0	0	0	0	0	1	11080	900	32	3		3	OR2AK2	1	248128876	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	540019	248128876	1121745	71	56124											
OR2L13	284521	broad.mit.edu	37	chr1	248138483	248138483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgatgataataggatcttGgataatgggctctatcgaca	11	6	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248138483	T	T	248138483	1	4	53	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248138483	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	9607	248138483	1112138	72	56125											
OR2M3	127062	broad.mit.edu	37	chr1	248367065	248367065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcacatgggatctggagaGggtcgtcgcaaagcttttac	12	8	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248367065	T	T	248367065	3	4	53	1	0	0	0	0	1	0	0	0	11105	991	35	2	698	2	OR2M3	1	248367065	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	228582	248367065	883556	73	56126											
OR2T33	391195	broad.mit.edu	37	chr1	248436331	248436331	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggttagtggacctatgGgatttgggtctcatataggt	13	5	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436331	T	T	248436331	2	4	53	1	0	0	0	0	0	0	0	1	11118	1219	43	2		2	OR2T33	1	248436331	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	69266	248436331	814290	74	56127											
SNTG2	54221	broad.mit.edu	37	chr2	1349414	1349414	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggacatgcataggaagagtgGactggcacttttcccctgtt	12	9	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1349414	C	C	1349414	1	2	53	0	1	0	0	0	0	0	0	0	14989	1189	41	4		4	SNTG2	2	1349414	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		1349414	241849959	75	56128											
CMPK2	129607	broad.mit.edu	37	chr2	6990108	6990108	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggacatttctaccctgGggacaggcaaaacacaaaga	11	9	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6990108	C	C	6990108	1	2	53	0	1	0	0	0	0	0	0	0	3613	1247	43	4		4	CMPK2	2	6990108	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5640694	6990108	236209265	76	56129											
OTOF	9381	broad.mit.edu	37	chr2	26693553	26693553	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctggctcctccgcagtgcCcttcttcttcttcttcttct	5	17	7	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26693553	G	G	26693553	3	3	53	1	0	0	0	0	1	0	0	0	11397	623	22	4	2307	4	OTOF	2	26693553	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	19703445	26693553	216505820	77	56130											
KCNG3	170850	broad.mit.edu	37	chr2	42671148	42671148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcatgataacactgcaCaaagctatggtagataaaag	9	7	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42671148	A	A	42671148	3	1	53	1	0	0	0	0	1	0	0	0	8099	478	17	3	77	3	KCNG3	2	42671148	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	15977595	42671148	200528225	78	56131											
GKN1	56287	broad.mit.edu	37	chr2	69204659	69204659	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacttcttggagtctttctAgctcctgccctagctaacta	8	12	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69204659	T	T	69204659	2	4	53	1	0	0	0	0	0	0	0	1	6488	407	15	5		5	GKN1	2	69204659	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	26533511	69204659	173994714	79	56132											
ASPRV1	151516	broad.mit.edu	37	chr2	70284862	70284862	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcaagtgattcacccgcctCggcctcccaaagtgctggga	10	15	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70284862	G	G	70284862	1	3	53	0	1	0	0	0	0	0	0	0	1062	899	31	4		4	ASPRV1	2	70284862	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1080203	70284862	172914511	80	56133											
STAMBP	10617	broad.mit.edu	37	chr2	74080750	74080750	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccagctactcgagaggctGaggcaggagaattgcttgaa	13	9	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74080750	C	C	74080750	1	2	53	0	1	0	0	0	0	0	0	0	15368	1305	45	4		4	STAMBP	2	74080750	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3795888	74080750	169118623	81	56134											
SLC4A5	57835	broad.mit.edu	37	chr2	74557753	74557754	+	Intron	INS	-	T	T													tagatggaggtggtgatgtcINSagatggaggtggtgaggtct					rs139880064		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74557754	T	T	74557753	6	5	53	0	1	1	1	0	0	0	0	0	14771	841	29	0		0	SLC4A5	2	74557753	Intron	INS	-	TCGA-17-Z021-01A-01W-0746-08	477003	74557753	168641620	82	56135											
ATOH8	84913	broad.mit.edu	37	chr2	85992335	85992335	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgcctagggcagggggcgGaccctgtcatcctccatcca	12	16	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85992335	A	A	85992335	1	1	53	0	1	0	0	0	0	0	0	0	1118	1189	41	4		4	ATOH8	2	85992335	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11434582	85992335	157207038	83	56136											
IL1RL2	8808	broad.mit.edu	37	chr2	102828581	102828581	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaagagctggatatggagGaagtgtccctaaaatcattt	11	5	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102828581	A	A	102828581	3	1	53	1	0	0	0	0	1	0	0	0	7734	1174	41	4	689	4	IL1RL2	2	102828581	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	16836246	102828581	140370792	84	56137											
TMEM182	130827	broad.mit.edu	37	chr2	103414410	103414410	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcatctgtgcagcccccttCgccagccattttctctacaa	5	16	3	0	rs140175654	byFrequency	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103414410	T	T	103414410	2	4	53	1	0	0	0	0	0	0	0	1	16224	883	31	4		4	TMEM182	2	103414410	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	585829	103414410	139784963	85	56138											
GCC2	9648	broad.mit.edu	37	chr2	109069519	109069519	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaacctggccatgctcAggacttaagtgattttaggt	10	8	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109069519	T	T	109069519	1	4	53	0	1	0	0	0	0	0	0	0	6348	203	7	5		5	GCC2	2	109069519	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	5655109	109069519	134129854	86	56139											
RANBP2	5903	broad.mit.edu	37	chr2	109369414	109369414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactttagatctaatcatgcGtgttccttaaagttgtgtgc	8	7	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109369414	T	T	109369414	1	4	53	0	1	0	0	0	0	0	0	0	13136	1160	40	3		3	RANBP2	2	109369414	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	299895	109369414	133829959	87	56140											
IL1F8	27177	broad.mit.edu	37	chr2	113786663	113786663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaagagtgactggaaaCacaaaggaaaatggagaaga	12	3	0	5			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113786663	A	A	113786663	1	1	53	0	1	0	0	0	0	0	0	0	7726	493	17	3		3	IL1F8	2	113786663	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4417249	113786663	129412710	88	56141											
CNTNAP5	129684	broad.mit.edu	37	chr2	125000026	125000026	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgtgctaatggtaaccaGagtatatttccgtcattttc	8	7	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125000026	T	T	125000026	1	4	53	0	1	0	0	0	0	0	0	0	3682	957	33	3		3	CNTNAP5	2	125000026	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11213363	125000026	118199347	89	56142											
LCT	3938	broad.mit.edu	37	chr2	136561575	136561575	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtgatccaaaacttcaCcttgtctcccagcctctgga	7	15	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136561575	T	T	136561575	3	4	53	1	0	0	0	0	1	0	0	0	8765	507	18	4	1223	4	LCT	2	136561575	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	11561549	136561575	106637798	90	56143											
THSD7B	80731	broad.mit.edu	37	chr2	137990703	137990703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacaagtaatgaccaaaaGgtatttattaggctgttact	10	5	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137990703	T	T	137990703	3	4	53	1	0	0	0	0	1	0	0	0	16003	1014	35	2	2087	2	THSD7B	2	137990703	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1429128	137990703	105208670	91	56144											
LRP1B	53353	broad.mit.edu	37	chr2	141665553	141665553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcacaaggatgcttgggtGgtccacacaagaaactgtca	11	9	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141665553	T	T	141665553	3	4	53	1	0	0	0	0	1	0	0	0	9042	1348	47	2	10666	2	LRP1B	2	141665553	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3674850	141665553	101533820	92	56145											
ARHGAP15	55843	broad.mit.edu	37	chr2	144421430	144421430	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatcaattcaacaagaagaActaacctaaatatatatgca	5	7	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144421430	G	G	144421430	1	3	53	0	1	0	0	0	0	0	0	0	868	58	2	5		5	ARHGAP15	2	144421430	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2755877	144421430	98777943	93	56146											
ZEB2	9839	broad.mit.edu	37	chr2	145155914	145155914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctttgctgcatatcaGcaaaagtagctgctccagtt	7	11	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145155914	T	T	145155914	3	4	53	1	0	0	0	0	1	0	0	0	17750	971	34	3	816	3	ZEB2	2	145155914	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	734484	145155914	98043459	94	56147											
TANC1	85461	broad.mit.edu	37	chr2	160020027	160020027	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctcagggctccagctcaCtaataatgccacggcccaac	7	15	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160020027	T	T	160020027	2	4	53	1	0	0	0	0	0	0	0	1	15663	564	20	4		4	TANC1	2	160020027	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	14864113	160020027	83179346	95	56148											
DPP4	1803	broad.mit.edu	37	chr2	162894882	162894882	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccatgtgattctgtaactTggtaaatttggttcaatttt	8	5	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162894882	A	A	162894882	2	1	53	1	0	0	0	0	0	0	0	1	4769	1799	63	5		5	DPP4	2	162894882	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	2874855	162894882	80304491	96	56149											
FAP	2191	broad.mit.edu	37	chr2	163075644	163075644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgttatttgaaaaggtGgatctcctggtctttgtttc	9	5	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163075644	T	T	163075644	3	4	53	1	0	0	0	0	1	0	0	0	5730	1348	47	2	1822	2	FAP	2	163075644	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	180762	163075644	80123729	97	56150											
SCN2A	6326	broad.mit.edu	37	chr2	166125285	166125285	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacacacacacacacgcAcacacacacacacaatgaaa	3	16	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166125285	G	G	166125285	1	3	53	0	1	0	0	0	0	0	0	0	14029	174	6	5		5	SCN2A	2	166125285	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3049641	166125285	77074088	98	56151											
SCN9A	6335	broad.mit.edu	37	chr2	167151251	167151251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaggtaaattaattgaTatagacatttatctacaaat	6	3	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167151251	A	A	167151251	1	1	53	0	1	0	0	0	0	0	0	0	14038	1421	49	5		5	SCN9A	2	167151251	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1025966	167151251	76048122	99	56152											
NOSTRIN	115677	broad.mit.edu	37	chr2	169713332	169713332	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagatgtagtgatgaaaaGggttatttttagaatacttg	10	3	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169713332	T	T	169713332	1	4	53	0	1	0	0	0	0	0	0	0	10641	1015	35	2		2	NOSTRIN	2	169713332	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2562081	169713332	73486041	100	56153											
ABCB11	8647	broad.mit.edu	37	chr2	169850327	169850327	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggaaaccacagatggtcGaggtcatgcgctgaatgaaa	12	8	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169850327	T	T	169850327	4	4	53	1	0	0	0	0	0	1	0	0	42	1059	37	3	3372	3	ABCB11	2	169850327	Nonsense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	136995	169850327	73349046	101	56154											
LRP2	4036	broad.mit.edu	37	chr2	170063225	170063225	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacctctgctggtgaccgGggctggacttgcttgtcaaa	13	10	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170063225	T	T	170063225	2	4	53	1	0	0	0	0	0	0	0	1	9043	1219	43	2		2	LRP2	2	170063225	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	212898	170063225	73136148	102	56155											
PDE11A	50940	broad.mit.edu	37	chr2	178524776	178524776	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattttctttctttctttcTttctttctttctttctttct	0	10	10	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178524776	C	C	178524776	1	2	53	0	1	0	0	0	0	0	0	0	11725	1624	56	5		5	PDE11A	2	178524776	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	8461551	178524776	64674597	103	56156											
OSBPL6	114880	broad.mit.edu	37	chr2	179250197	179250197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attaccaggttagccatcatCcacccatttctgcctgtcac	5	15	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179250197	A	A	179250197	3	1	53	1	0	0	0	0	1	0	0	0	11375	855	30	3	2214	3	OSBPL6	2	179250197	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	725421	179250197	63949176	104	56157											
TTN	7273	broad.mit.edu	37	chr2	179442618	179442618	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaataacctcaggttttccAggaggatctaaaacataaaa	6	7	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179442618	T	T	179442618	2	4	53	1	0	0	0	0	0	0	0	1	16861	175	7	5		5	TTN	2	179442618	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	192421	179442618	63756755	105	56158											
TTN	7273	broad.mit.edu	37	chr2	179446579	179446579	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgaaaacttccttcctgGgtgtttaatgctgcttttaa	7	8	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179446579	A	A	179446579	1	1	53	0	1	0	0	0	0	0	0	0	16861	1247	43	4		4	TTN	2	179446579	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3961	179446579	63752794	106	56159											
TTN	7273	broad.mit.edu	37	chr2	179587009	179587009	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctgtgagtctagcactaGaagatgctgttccaagtggg	13	7	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179587009	C	C	179587009	3	2	53	1	0	0	0	0	1	0	0	0	16861	942	33	4	82168	4	TTN	2	179587009	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	140430	179587009	63612364	107	56160											
TTN	7273	broad.mit.edu	37	chr2	179636129	179636129	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaatctgggttggcaactTcacattcaaacacagcttcc	8	11	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179636129	C	C	179636129	3	2	53	1	0	0	0	0	1	0	0	0	16861	1783	62	5	103379	5	TTN	2	179636129	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	49120	179636129	63563244	108	56161											
TTN	7273	broad.mit.edu	37	chr2	179644622	179644622	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgaacttggaccttctaaTagctgtctaaccccgagctc	8	12	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179644622	C	C	179644622	1	2	53	0	1	0	0	0	0	0	0	0	16861	1421	49	5		5	TTN	2	179644622	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	8493	179644622	63554751	109	56162											
ITGA4	3676	broad.mit.edu	37	chr2	182339745	182339745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagagagacaatcagtgGttgggggtcacactttccag	14	7	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182339745	T	T	182339745	3	4	53	1	0	0	0	0	1	0	0	0	7948	1270	44	3	388	3	ITGA4	2	182339745	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2695123	182339745	60859628	110	56163											
STAT4	6775	broad.mit.edu	37	chr2	191898461	191898461	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcaaaagtcattcttaccTgaaatactcatatatagatt	3	7	4	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191898461	A	A	191898461	1	1	53	0	1	0	0	0	0	0	0	0	15385	1595	55	5		5	STAT4	2	191898461	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	9558716	191898461	51300912	111	56164											
NRP2	8828	broad.mit.edu	37	chr2	206590765	206590765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccatggtgatgacaatGgctggacccccaacttggat	12	11	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206590765	T	T	206590765	3	4	53	1	0	0	0	0	1	0	0	0	10756	1348	47	2	971	2	NRP2	2	206590765	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	14692304	206590765	36608608	112	56165											
PLEKHM3	389072	broad.mit.edu	37	chr2	208866199	208866199	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctcatagcaccattgtcTgttatgttactgagtacctc	6	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208866199	A	A	208866199	2	1	53	1	0	0	0	0	0	0	0	1	12177	1567	55	5		5	PLEKHM3	2	208866199	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	2275434	208866199	34333174	113	56166											
CPS1	1373	broad.mit.edu	37	chr2	211452942	211452942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcagctaatttcctctGtcacagagaaacttatgcat	7	9	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211452942	T	T	211452942	1	4	53	0	1	0	0	0	0	0	0	0	3855	1392	48	3		3	CPS1	2	211452942	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2586743	211452942	31746431	114	56167											
ERBB4	2066	broad.mit.edu	37	chr2	212589829	212589829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtccttaggtcctgagCagcctccagcacattctcga	9	14	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212589829	A	A	212589829	3	1	53	1	0	0	0	0	1	0	0	0	5251	710	25	3	3305	3	ERBB4	2	212589829	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1136887	212589829	30609544	115	56168											
SLC11A1	6556	broad.mit.edu	37	chr2	219251378	219251378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccccgcaccgtcctctgGctgaccatcgagctagccat	10	17	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219251378	T	T	219251378	3	4	53	1	0	0	0	0	1	0	0	0	14493	1212	42	3	432	3	SLC11A1	2	219251378	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6661549	219251378	23947995	116	56169											
C2orf83	56918	broad.mit.edu	37	chr2	228476173	228476173	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtggcttcttgttctcTgtggacttttcattacatgc	8	9	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228476173	G	G	228476173	2	3	53	1	0	0	0	0	0	0	0	1	2220	1567	55	5		5	C2orf83	2	228476173	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	9224795	228476173	14723200	117	56170											
CCL20	6364	broad.mit.edu	37	chr2	228681922	228681922	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctaatttgtgcctcactGgacttgtccaattaatgaag	7	8	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228681922	T	T	228681922	1	4	53	0	1	0	0	0	0	0	0	0	2920	1363	47	2		2	CCL20	2	228681922	3'UTR	SNP	G	TCGA-17-Z021-01A-01W-0746-08	205749	228681922	14517451	118	56171											
AGAP1	116987	broad.mit.edu	37	chr2	236502070	236502071	+	Intron	DEL	AG	-	-													tttttttgggtggggaggacAgaatctaattttagttgttt							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	236502071	-	-	236502070	6	5	53	0	1	1	0	1	0	0	0	0	366	203	7	0		0	AGAP1	2	236502070	Intron	DEL	AG	TCGA-17-Z021-01A-01W-0746-08	7820148	236502070	6697303	119	56172											
HDAC4	9759	broad.mit.edu	37	chr2	240016682	240016682	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagaagaaacaggacattaTttacacattaaaggaacact	7	7	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240016682	A	A	240016682	1	1	53	0	1	0	0	0	0	0	0	0	7076	1508	52	5		5	HDAC4	2	240016682	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	3514612	240016682	3182691	120	56173											
CPNE9	151835	broad.mit.edu	37	chr3	9758690	9758690	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attactgtttgagaaatagtGatgtaataatcattagttcc	7	4	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9758690	T	T	9758690	1	4	53	0	1	0	0	0	0	0	0	0	3851	1305	45	3		3	CPNE9	3	9758690	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		9758690	188263740	121	56174											
RBMS3	27303	broad.mit.edu	37	chr3	29453095	29453095	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagcagagtgtcttgccaGagagagagagagtgaaactt	14	6	1	6			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29453095	T	T	29453095	1	4	53	0	1	0	0	0	0	0	0	0	13258	957	33	3		3	RBMS3	3	29453095	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	19694405	29453095	168569335	122	56175											
SETD2	29072	broad.mit.edu	37	chr3	47098912	47098912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctcaaacaacttccggCgttcctctgtagaaagttta	7	11	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47098912	A	A	47098912	3	1	53	1	0	0	0	0	1	0	0	0	14244	768	27	3	1360	3	SETD2	3	47098912	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	17645817	47098912	150923518	123	56176											
CACNA2D3	55799	broad.mit.edu	37	chr3	55085889	55085889	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tattcgggtgggagtgacccGattttccaggtgccgtctgt	14	9	1	1	rs112060417	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55085889	A	A	55085889	1	1	53	0	1	0	0	0	0	0	0	0	2576	1073	37	4		4	CACNA2D3	3	55085889	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7986977	55085889	142936541	124	56177											
FLNB	2317	broad.mit.edu	37	chr3	58116292	58116292	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcacgtagtaggtgttctgTgagaatggttgacaacaatg	13	5	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58116292	C	C	58116292	1	2	53	0	1	0	0	0	0	0	0	0	5992	1711	59	5		5	FLNB	3	58116292	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	3030403	58116292	139906138	125	56178											
FHIT	2272	broad.mit.edu	37	chr3	60015627	60015627	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtctgtGtgtgtgtgtgtgtgtgtgtg	20	1	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60015627	C	C	60015627	1	2	53	0	1	0	0	0	0	0	0	0	5934	1392	48	4		4	FHIT	3	60015627	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1899335	60015627	138006803	126	56179											
CNTN3	5067	broad.mit.edu	37	chr3	74334749	74334749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttcctgatttgttcaaCcaatatttactgaagaccta	4	8	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74334749	A	A	74334749	1	1	53	0	1	0	0	0	0	0	0	0	3674	522	18	3		3	CNTN3	3	74334749	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	14319122	74334749	123687681	127	56180											
ROBO1	6091	broad.mit.edu	37	chr3	78934012	78934012	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctctctctctctctctctCtttctgtgtgtgtgtgtgtg	8	12	6	0	rs71899188		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78934012	T	T	78934012	1	4	53	0	1	0	0	0	0	0	0	0	13624	928	32	4		4	ROBO1	3	78934012	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4599263	78934012	119088418	128	56181											
CADM2	253559	broad.mit.edu	37	chr3	86062823	86062823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagagcacctaactgtGttggtggggtttgttgatga	17	4	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86062823	T	T	86062823	1	4	53	0	1	0	0	0	0	0	0	0	2593	1392	48	3		3	CADM2	3	86062823	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7128811	86062823	111959607	129	56182											
OR5H6	79295	broad.mit.edu	37	chr3	97983440	97983440	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgatcaacttcttagctaaGagtaagatgatatctctctc	6	9	4	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97983440	A	A	97983440	2	1	53	1	0	0	0	0	0	0	0	1	11257	933	33	4		4	OR5H6	3	97983440	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11920617	97983440	100038990	130	56183											
KIAA1524	57650	broad.mit.edu	37	chr3	108298114	108298114	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaagttctaaaattgactGaagtgagtcatacctggtga	9	5	2	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108298114	A	A	108298114	1	1	53	0	1	0	0	0	0	0	0	0	8309	1305	45	4		4	KIAA1524	3	108298114	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	10314674	108298114	89724316	131	56184											
GCET2	257144	broad.mit.edu	37	chr3	111846713	111846713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttctcatcaaattggaaGgattgcttccctgattaact	7	8	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111846713	T	T	111846713	1	4	53	0	1	0	0	0	0	0	0	0	6350	1015	35	2		2	GCET2	3	111846713	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3548599	111846713	86175717	132	56185											
SIDT1	54847	broad.mit.edu	37	chr3	113300170	113300170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgacattgcatgacattAtggatgctttccattttatt	7	7	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113300170	G	G	113300170	1	3	53	0	1	0	0	0	0	0	0	0	14415	464	16	5		5	SIDT1	3	113300170	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1453457	113300170	84722260	133	56186											
ADCY5	111	broad.mit.edu	37	chr3	123044228	123044228	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggttgtagaaggggcgctCagccccccagtgtggtgggt	18	9	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123044228	G	G	123044228	3	3	53	1	0	0	0	0	1	0	0	0	297	835	29	4	1812	4	ADCY5	3	123044228	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	9744058	123044228	74978202	134	56187											
ADCY5	111	broad.mit.edu	37	chr3	123137357	123137357	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtgtcacaacatggcaaaGatcaaaggggaagcagatac	11	8	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123137357	C	C	123137357	1	2	53	0	1	0	0	0	0	0	0	0	297	957	33	4		4	ADCY5	3	123137357	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	93129	123137357	74885073	135	56188											
KALRN	8997	broad.mit.edu	37	chr3	124117372	124117372	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatgtagctttggttcactCattaagcagagagcatcagg	11	8	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124117372	T	T	124117372	1	4	53	0	1	0	0	0	0	0	0	0	8045	841	29	4		4	KALRN	3	124117372	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	980015	124117372	73905058	136	56189											
OSBPL11	114885	broad.mit.edu	37	chr3	125250663	125250664	+	Intron	DNP	CC	AT	AT													tagtaagctaaagttctcagCcaagtagatacatttttatc							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	125250664	AT	AT	125250663	1	1	53	0	1	0	0	0	0	0	0	0	11370	754	26	3		3	OSBPL11	3	125250663	Intron	DNP	CC	TCGA-17-Z021-01A-01W-0746-08	1133291	125250663	72771767	137	56190											
C3orf22	152065	broad.mit.edu	37	chr3	126272292	126272292	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctggaagacaagaggaggCgtcagagggggcaggggtgg	23	5	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126272292	T	T	126272292	1	4	53	0	1	0	0	0	0	0	0	0	2237	783	27	4		4	C3orf22	3	126272292	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1021629	126272292	71750138	138	56191											
CPNE4	131034	broad.mit.edu	37	chr3	131261683	131261683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggggggtgaagaggtgaGggagacaaggacaatacaat	20	3	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131261683	T	T	131261683	1	4	53	0	1	0	0	0	0	0	0	0	3846	1015	35	2		2	CPNE4	3	131261683	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4989391	131261683	66760747	139	56192											
EPHB1	2047	broad.mit.edu	37	chr3	134967157	134967157	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccctgtatgtcactgcaGgtcatcaatgccatcgagca	9	12	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134967157	T	T	134967157	5	4	53	1	0	0	0	0	0	0	1	0	5216	1014	35	2	2550	2	EPHB1	3	134967157	Splice_Site	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3705474	134967157	63055273	140	56193											
CLSTN2	64084	broad.mit.edu	37	chr3	139780043	139780043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcaacttctattttgcaaCcaatgtggtaggtaaaccct	6	9	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139780043	A	A	139780043	1	1	53	0	1	0	0	0	0	0	0	0	3594	522	18	3		3	CLSTN2	3	139780043	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4812886	139780043	58242387	141	56194											
C3orf79	152118	broad.mit.edu	37	chr3	153202422	153202422	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatggatgttcagttgccAtcttctgcctactcctgagc	8	13	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153202422	G	G	153202422	3	3	53	1	0	0	0	0	1	0	0	0	2269	217	8	5	79	5	C3orf79	3	153202422	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	13422379	153202422	44820008	142	56195											
SI	6476	broad.mit.edu	37	chr3	164748533	164748533	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccacgttgtgtgcacttTtgttcagttgccaaatctgc	9	11	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164748533	C	C	164748533	2	2	53	1	0	0	0	0	0	0	0	1	14410	1838	64	5		5	SI	3	164748533	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	11546111	164748533	33273897	143	56196											
PRKCI	5584	broad.mit.edu	37	chr3	169999060	169999060	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacagaaagcaggtaagattGaaagatagtagaatgattac	11	3	0	6			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169999060	A	A	169999060	1	1	53	0	1	0	0	0	0	0	0	0	12620	1305	45	4		4	PRKCI	3	169999060	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5250527	169999060	28023370	144	56197											
KCNMB2	10242	broad.mit.edu	37	chr3	178488999	178488999	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccaacgctaccctactgctCcacaagcccatcatctctgt	4	18	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178488999	T	T	178488999	1	4	53	0	1	0	0	0	0	0	0	0	8145	870	30	4		4	KCNMB2	3	178488999	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	8489939	178488999	19533431	145	56198											
YEATS2	55689	broad.mit.edu	37	chr3	183446631	183446632	+	Nonsense_Mutation	DNP	GG	TT	TT													tataaaccaaatgaccttgtGgaagttaggtaagcacgctt							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	183446632	TT	TT	183446631	4	4	53	1	0	0	0	0	0	1	0	0	17599	1335	47	2	826	2	YEATS2	3	183446631	Nonsense_Mutation	DNP	GG	TCGA-17-Z021-01A-01W-0746-08	4957632	183446631	14575799	146	56199											
IGF2BP2	10644	broad.mit.edu	37	chr3	185414480	185414480	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcttccatgtcagaatGggaaggcaagatcatatgta	11	6	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185414480	A	A	185414480	1	1	53	0	1	0	0	0	0	0	0	0	7644	1363	47	4		4	IGF2BP2	3	185414480	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1967849	185414480	12607950	147	56200											
CRYGS	1427	broad.mit.edu	37	chr3	186256671	186256671	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaaattgctccatgatGgaagggcaatcttcggtggt	13	6	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186256671	A	A	186256671	2	1	53	1	0	0	0	0	0	0	0	1	3951	1335	47	4		4	CRYGS	3	186256671	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	842191	186256671	11765759	148	56201											
LPP	4026	broad.mit.edu	37	chr3	188327400	188327400	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggtatgcccccaaccaggGacgctattatgaaggctact	11	11	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188327400	A	A	188327400	3	1	53	1	0	0	0	0	1	0	0	0	9010	1174	41	4	895	4	LPP	3	188327400	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2070729	188327400	9695030	149	56202											
C3orf59	151963	broad.mit.edu	37	chr3	192517357	192517357	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcatctaagtccaggtcCaccacgccttcccggacacc	7	18	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192517357	A	A	192517357	2	1	53	1	0	0	0	0	0	0	0	1	2259	581	21	2		2	C3orf59	3	192517357	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4189957	192517357	5505073	150	56203											
ACAP2	23527	broad.mit.edu	37	chr3	195063225	195063225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacataatcgagggctatgTgtcggaaacattttcttgtt	10	7	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195063225	A	A	195063225	3	1	53	1	0	0	0	0	1	0	0	0	119	1696	59	5	1905	5	ACAP2	3	195063225	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	2545868	195063225	2959205	151	56204											
ACAP2	23527	broad.mit.edu	37	chr3	195063241	195063241	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgtgtcggaaacattttcTtgttgctgtcagaatgttgg	11	5	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195063241	A	A	195063241	4	1	53	1	0	0	0	0	0	1	0	0	119	1617	56	5	1921	5	ACAP2	3	195063241	Nonsense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	16	195063241	2959189	152	56205											
ZNF595	152687	broad.mit.edu	37	chr4	68359	68359	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttttggcattgtgctcAactgaagtagtacaaattct	8	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68359	C	C	68359	1	2	53	0	1	0	0	0	0	0	0	0	18152	145	5	5		5	ZNF595	4	68359	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08		68359	191085917	153	56206											
ZNF732	654254	broad.mit.edu	37	chr4	299280	299280	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggcaaaagccgcgccagatCccggatgccgccccctcctc	10	19	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	299280	G	G	299280	1	3	53	0	1	0	0	0	0	0	0	0	18252	870	30	4		4	ZNF732	4	299280	5'Flank	SNP	C	TCGA-17-Z021-01A-01W-0746-08	230921	299280	190854996	154	56207											
EVC	2121	broad.mit.edu	37	chr4	5729244	5729244	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatgttctcccattttgTaggttgcctgttcactctga	8	9	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5729244	C	C	5729244	1	2	53	0	1	0	0	0	0	0	0	0	5327	1653	57	5		5	EVC	4	5729244	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	5429964	5729244	185425032	155	56208											
CRMP1	1400	broad.mit.edu	37	chr4	5862927	5862927	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaggaacgattaagttctCtcctatttgtctggaggcaa	9	9	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5862927	A	A	5862927	4	1	53	1	0	0	0	0	0	1	0	0	3922	922	32	3	1627	3	CRMP1	4	5862927	Nonsense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	133683	5862927	185291349	156	56209											
QDPR	5860	broad.mit.edu	37	chr4	17510852	17510852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagtggtcacctctcccCagggttcccctcacaatgtt	8	16	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17510852	A	A	17510852	1	1	53	0	1	0	0	0	0	0	0	0	12980	609	21	2		2	QDPR	4	17510852	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	11647925	17510852	173643424	157	56210											
MED28	80306	broad.mit.edu	37	chr4	17616422	17616422	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtactttggtggacgagttgGagtcatctttcgaggtaata	13	5	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17616422	A	A	17616422	3	1	53	1	0	0	0	0	1	0	0	0	9539	1175	41	4	147	4	MED28	4	17616422	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	105570	17616422	173537854	158	56211											
GPR125	166647	broad.mit.edu	37	chr4	22449198	22449198	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcattttatcctatttcaTattttctaaagcatcctaca	1	9	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22449198	C	C	22449198	1	2	53	0	1	0	0	0	0	0	0	0	6704	1421	49	5		5	GPR125	4	22449198	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	4832776	22449198	168705078	159	56212											
PPARGC1A	10891	broad.mit.edu	37	chr4	23803432	23803432	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtttcgtttgacctgcgCaaagtgtatccattttcaag	8	9	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23803432	T	T	23803432	2	4	53	1	0	0	0	0	0	0	0	1	12396	709	25	4		4	PPARGC1A	4	23803432	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1354234	23803432	167350844	160	56213											
RHOH	399	broad.mit.edu	37	chr4	40196975	40196975	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttctttcctttctttcttTtccttccttccttccttcct	0	16	3	0	rs57184118		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40196975	C	C	40196975	1	2	53	0	1	0	0	0	0	0	0	0	13449	1856	64	5		5	RHOH	4	40196975	5'Flank	SNP	T	TCGA-17-Z021-01A-01W-0746-08	16393543	40196975	150957301	161	56214											
APBB2	323	broad.mit.edu	37	chr4	40940040	40940040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagaaaaacattaaaagGggaaaaagcaagttggacaa	10	3	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40940040	T	T	40940040	1	4	53	0	1	0	0	0	0	0	0	0	763	1247	43	2		2	APBB2	4	40940040	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	743065	40940040	150214236	162	56215											
GUF1	60558	broad.mit.edu	37	chr4	44688028	44688028	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcttcaggcaattattgAaagaatccccccgtgagtat	8	9	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44688028	G	G	44688028	3	3	53	1	0	0	0	0	1	0	0	0	6964	246	9	5	748	5	GUF1	4	44688028	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3747988	44688028	146466248	163	56216											
GABRG1	2565	broad.mit.edu	37	chr4	46060352	46060352	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatatcccattcttctgctCaggtcaaaaaaaattgtcat	4	9	5	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46060352	A	A	46060352	2	1	53	1	0	0	0	0	0	0	0	1	6231	813	29	3		3	GABRG1	4	46060352	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1372324	46060352	145093924	164	56217											
GABRB1	2560	broad.mit.edu	37	chr4	47213261	47213261	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgtagcttagctgttcaTtccaggagggtctcctagtg	11	10	2	0	rs113264388	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47213261	C	C	47213261	1	2	53	0	1	0	0	0	0	0	0	0	6226	1508	52	5		5	GABRB1	4	47213261	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1152909	47213261	143941015	165	56218											
LRRC66	339977	broad.mit.edu	37	chr4	52861612	52861613	+	Missense_Mutation	DNP	CC	AG	AG													atcattcctatggatgtggtCctgcgctgctgacattagtt							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	52861613	AG	AG	52861612	3	1	53	1	0	0	0	0	1	0	0	0	9105	855	30	3	1070	3	LRRC66	4	52861612	Missense_Mutation	DNP	CC	TCGA-17-Z021-01A-01W-0746-08	5648351	52861612	138292664	166	56219											
SGCB	6443	broad.mit.edu	37	chr4	52899847	52899847	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggaacagctataccctcTcgttttggtgcatttatcta	7	9	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52899847	A	A	52899847	1	1	53	0	1	0	0	0	0	0	0	0	14313	1566	54	5		5	SGCB	4	52899847	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	38235	52899847	138254429	167	56220											
SPATA18	132671	broad.mit.edu	37	chr4	52961111	52961111	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagctgctttctccagtgcCgccatctgtcttctgtgtct	8	14	5	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52961111	T	T	52961111	1	4	53	0	1	0	0	0	0	0	0	0	15119	667	23	4		4	SPATA18	4	52961111	3'UTR	SNP	C	TCGA-17-Z021-01A-01W-0746-08	61264	52961111	138193165	168	56221											
SRP72	6731	broad.mit.edu	37	chr4	57357634	57357634	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcgtcagatagtatgtctCtaaaagtagatgttgaggct	10	6	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57357634	G	G	57357634	3	3	53	1	0	0	0	0	1	0	0	0	15275	912	32	4	1602	4	SRP72	4	57357634	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4396523	57357634	133796642	169	56222											
TECRL	253017	broad.mit.edu	37	chr4	65275158	65275158	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaatactgctggagaacCtttgaaaggtcaaatggtat	10	5	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65275158	A	A	65275158	1	1	53	1	0	0	0	0	0	0	0	0	15868	696	24	2		2	TECRL	4	65275158	Translation_Start_Site	SNP	C	TCGA-17-Z021-01A-01W-0746-08	7917524	65275158	125879118	170	56223											
UGT2B4	7363	broad.mit.edu	37	chr4	70346367	70346367	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtaattaatctcttttcccCttctttcctgttctaacaaa	2	12	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70346367	T	T	70346367	2	4	53	1	0	0	0	0	0	0	0	1	17087	680	24	4		4	UGT2B4	4	70346367	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5071209	70346367	120807909	171	56224											
UGT2B4	7363	broad.mit.edu	37	chr4	70361152	70361152	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagaacaacatcaaatcttGactcctgtagtttcttcata	4	10	4	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70361152	T	T	70361152	4	4	53	1	0	0	0	0	0	1	0	0	17087	1294	45	3	1182	3	UGT2B4	4	70361152	Nonsense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	14785	70361152	120793124	172	56225											
DCK	1633	broad.mit.edu	37	chr4	71863875	71863875	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgccagatggtgcaatgtTcaaagtactcaagatgaatt	10	6	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71863875	A	A	71863875	2	1	53	1	0	0	0	0	0	0	0	1	4323	1770	62	5		5	DCK	4	71863875	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1502723	71863875	119290401	173	56226											
GC	2638	broad.mit.edu	37	chr4	72631341	72631341	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaattactttcacaggacTtggcagacagtgctgaggtc	12	8	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72631341	A	A	72631341	3	1	53	1	0	0	0	0	1	0	0	0	6344	1609	56	5	1179	5	GC	4	72631341	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	767466	72631341	118522935	174	56227											
FAM13A	10144	broad.mit.edu	37	chr4	89912230	89912230	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaaaggtacttgaggaGgcagtagtgggtgtctggca	17	6	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89912230	A	A	89912230	3	1	53	1	0	0	0	0	1	0	0	0	5498	1000	35	4	2689	4	FAM13A	4	89912230	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	17280889	89912230	101242046	175	56228											
GRID2	2895	broad.mit.edu	37	chr4	94690496	94690496	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggacataaagagctttgcAggggtcttttgtatcctggc	12	8	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94690496	T	T	94690496	2	4	53	1	0	0	0	0	0	0	0	1	6838	175	7	5		5	GRID2	4	94690496	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	4778266	94690496	96463780	176	56229											
ADH6	130	broad.mit.edu	37	chr4	100125328	100125328	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaattacatcaaatgccAttgagttggtgaaatatcct	7	6	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100125328	T	T	100125328	1	4	53	0	1	0	0	0	0	0	0	0	312	232	8	5		5	ADH6	4	100125328	3'UTR	SNP	A	TCGA-17-Z021-01A-01W-0746-08	5434832	100125328	91028948	177	56230											
BANK1	55024	broad.mit.edu	37	chr4	102753976	102753976	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtgtttagtttttgctccCcatctccattggttttctcc	6	12	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102753976	T	T	102753976	1	4	53	0	1	0	0	0	0	0	0	0	1314	638	22	4		4	BANK1	4	102753976	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2628648	102753976	88400300	178	56231											
SEC24B	10427	broad.mit.edu	37	chr4	110454962	110454962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttttggtattacacagtGttttacagccattaccacta	5	8	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110454962	T	T	110454962	1	4	53	0	1	0	0	0	0	0	0	0	14108	1392	48	3		3	SEC24B	4	110454962	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7700986	110454962	80699314	179	56232											
ANK2	287	broad.mit.edu	37	chr4	114279001	114279001	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggtagacagacaatcacAgggtaccacccctgacacca	9	13	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114279001	T	T	114279001	3	4	53	1	0	0	0	0	1	0	0	0	621	188	7	5	9442	5	ANK2	4	114279001	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3824039	114279001	76875275	180	56233											
ANK2	287	broad.mit.edu	37	chr4	114294269	114294269	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgatatgcctgaaataccCccagaaacagtcacagaaga	8	11	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114294269	A	A	114294269	2	1	53	1	0	0	0	0	0	0	0	1	621	610	22	2		2	ANK2	4	114294269	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	15268	114294269	76860007	181	56234											
UGT8	7368	broad.mit.edu	37	chr4	115585300	115585300	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgatttggaggtaaggTaataatgtagattgtttctt	11	1	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115585300	A	A	115585300	1	1	53	0	1	0	0	0	0	0	0	0	17091	1653	57	5		5	UGT8	4	115585300	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1291031	115585300	75568976	182	56235											
QRFPR	84109	broad.mit.edu	37	chr4	122250793	122250793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgggattacagatggaGttggaaaatccaataatttg	10	4	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122250793	T	T	122250793	3	4	53	1	0	0	0	0	1	0	0	0	12986	1020	36	3	327	3	QRFPR	4	122250793	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6665493	122250793	68903483	183	56236											
INTU	27152	broad.mit.edu	37	chr4	128615246	128615246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatactggcttcatacaatGgtttaggaaggatccctctt	9	8	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128615246	T	T	128615246	1	4	53	0	1	0	0	0	0	0	0	0	7856	1363	47	2		2	INTU	4	128615246	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6364453	128615246	62539030	184	56237											
KIAA0922	23240	broad.mit.edu	37	chr4	154524536	154524536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgaaaacaagacagagGcaaaatgctagctcctcttc	7	10	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154524536	T	T	154524536	3	4	53	1	0	0	0	0	1	0	0	0	8271	1194	42	3	2815	3	KIAA0922	4	154524536	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	25909290	154524536	36629740	185	56238											
GLRB	2743	broad.mit.edu	37	chr4	158041792	158041792	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattggtcagttatgatccCaggataagaccaaacttcaa	7	8	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158041792	T	T	158041792	2	4	53	1	0	0	0	0	0	0	0	1	6522	581	21	4		4	GLRB	4	158041792	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3517256	158041792	33112484	186	56239											
GLRA3	8001	broad.mit.edu	37	chr4	175580430	175580430	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaactgagtttttctgattCtgaattatgtcatttataca	5	5	3	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175580430	T	T	175580430	1	4	53	0	1	0	0	0	0	0	0	0	6520	928	32	4		4	GLRA3	4	175580430	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	17538638	175580430	15573846	187	56240											
GPM6A	2823	broad.mit.edu	37	chr4	176835414	176835414	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctgcatgtggaaagacGgggtaaaggaacagtcaatc	13	7	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176835414	A	A	176835414	1	1	53	0	1	0	0	0	0	0	0	0	6680	1131	39	4		4	GPM6A	4	176835414	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1254984	176835414	14318862	188	56241											
PDCD6	10016	broad.mit.edu	37	chr5	290896	290896	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctccactgctatgatgGtgtggcctctgatctctgac	10	13	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	290896	A	A	290896	1	1	53	0	1	0	0	0	0	0	0	0	11717	1276	44	4		4	PDCD6	5	290896	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		290896	180624364	189	56242											
CTNND2	1501	broad.mit.edu	37	chr5	11098731	11098731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagggcgcctgccgcccCttccagcgtgtctggatttg	13	15	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11098731	A	A	11098731	3	1	53	1	0	0	0	0	1	0	0	0	4054	681	24	2	1116	2	CTNND2	5	11098731	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	10807835	11098731	169816529	190	56243											
FAM105A	54491	broad.mit.edu	37	chr5	14601519	14601519	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgtgcaagagaatggaaaGgagagacaccccgtaacaag	12	7	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14601519	C	C	14601519	3	2	53	1	0	0	0	0	1	0	0	0	5433	1001	35	4	330	4	FAM105A	5	14601519	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3502788	14601519	166313741	191	56244											
CDH9	1007	broad.mit.edu	37	chr5	26905931	26905931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaattgtgttttttttttGgtagaggaatggattatggt	13	0	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26905931	T	T	26905931	1	4	53	0	1	0	0	0	0	0	0	0	3147	1363	47	2		2	CDH9	5	26905931	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	12304412	26905931	154009329	192	56245											
CDH6	1004	broad.mit.edu	37	chr5	31323011	31323011	+	Frame_Shift_Del	DEL	G	-	-													aggacatcagagataacattGtcagttacaacgacgaaggt							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31323011	-	-	31323011	7	5	53	1	0	1	0	1	0	0	0	0	3144	1377	48	0	2011	0	CDH6	5	31323011	Frame_Shift_Del	DEL	G	TCGA-17-Z021-01A-01W-0746-08	4417080	31323011	149592249	193	56246											
PDZD2	23037	broad.mit.edu	37	chr5	31848204	31848204	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcccagaagaaagatcaGgtagctcaaaagtaggcaag	11	8	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31848204	C	C	31848204	1	2	53	0	1	0	0	0	0	0	0	0	11795	1015	35	4		4	PDZD2	5	31848204	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	525193	31848204	149067056	194	56247											
GOLPH3	64083	broad.mit.edu	37	chr5	32126858	32126858	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagaaaaacagaagaaaatCtgccatgtttttctccctaa	5	9	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32126858	A	A	32126858	1	1	53	0	1	0	0	0	0	0	0	0	6632	928	32	3		3	GOLPH3	5	32126858	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	278654	32126858	148788402	195	56248											
SUB1	10923	broad.mit.edu	37	chr5	32591623	32591623	+	Intron	SNP	A	T	T													ggatcttttgacactggggtAtgttttatttttatgtgtgc							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32591623	T	T	32591623	1	4	53	0	1	0	0	0	0	0	0	0	15480	464	16	5		5	SUB1	5	32591623	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	464765	32591623	148323637	196	56249	268	2									
SUB1	10923	broad.mit.edu	37	chr5	32591625	32591625	+	Intron	SNP	G	T	T													atcttttgacactggggtatGttttatttttatgtgtgcaa							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32591625	T	T	32591625	1	4	53	0	1	0	0	0	0	0	0	0	15480	1392	48	3		3	SUB1	5	32591625	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2	32591625	148323635	197	56250	268	2									
RAI14	26064	broad.mit.edu	37	chr5	34818995	34818995	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttttttttttccttcaaCcaaactatttcatgtccatt	2	9	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34818995	G	G	34818995	1	3	53	0	1	0	0	0	0	0	0	0	13116	522	18	4		4	RAI14	5	34818995	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2227370	34818995	146096265	198	56251											
UGT3A1	133688	broad.mit.edu	37	chr5	35965369	35965369	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctttaagaacgtgccctaGgtgcctcctttgccaatccc	7	15	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35965369	A	A	35965369	1	1	53	0	1	0	0	0	0	0	0	0	17089	1015	35	4		4	UGT3A1	5	35965369	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1146374	35965369	144949891	199	56252											
GHR	2690	broad.mit.edu	37	chr5	42689086	42689086	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggttcatcatggtacaaaGaacctaggacccatacagct	9	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42689086	T	T	42689086	3	4	53	1	0	0	0	0	1	0	0	0	6435	933	33	3	241	3	GHR	5	42689086	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6723717	42689086	138226174	200	56253											
RNF180	285671	broad.mit.edu	37	chr5	63553344	63553344	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattacatttattgatttgcGtatgttgaaccagccttgca	8	7	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63553344	A	A	63553344	1	1	53	0	1	0	0	0	0	0	0	0	13575	1160	40	4		4	RNF180	5	63553344	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	20864258	63553344	117361916	201	56254											
PDE8B	8622	broad.mit.edu	37	chr5	76627406	76627406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaagccccaggactgttgGggaaaggaagaaactgtgtt	13	6	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76627406	T	T	76627406	1	4	53	0	1	0	0	0	0	0	0	0	11748	1247	43	2		2	PDE8B	5	76627406	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	13074062	76627406	104287854	202	56255											
HOMER1	9456	broad.mit.edu	37	chr5	78752776	78752776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcttgctggtgggtaccCagttcttctttgtgtttggg	13	8	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78752776	A	A	78752776	3	1	53	1	0	0	0	0	1	0	0	0	7345	595	21	2	1025	2	HOMER1	5	78752776	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2125370	78752776	102162484	203	56256											
XRCC4	7518	broad.mit.edu	37	chr5	82373276	82373276	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccgcctaccaagacgggCggttaagacactaggatagg	13	11	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82373276	A	A	82373276	1	1	53	0	1	0	0	0	0	0	0	0	17582	783	27	3		3	XRCC4	5	82373276	5'Flank	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3620500	82373276	98541984	204	56257											
MCTP1	79772	broad.mit.edu	37	chr5	94356767	94356767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagccaaaatagcttgCtggtttagctgagccagacc	11	9	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94356767	A	A	94356767	1	1	53	0	1	0	0	0	0	0	0	0	9493	812	28	3		3	MCTP1	5	94356767	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	11983491	94356767	86558493	205	56258											
ERAP2	64167	broad.mit.edu	37	chr5	96239250	96239250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtctgattcatgatgtGtttcagctagttgggtaagg	14	4	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96239250	T	T	96239250	2	4	53	1	0	0	0	0	0	0	0	1	5246	1364	48	3		3	ERAP2	5	96239250	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1882483	96239250	84676010	206	56259											
GIN1	54826	broad.mit.edu	37	chr5	102444222	102444222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaacttccacaaggaagaaTgtggggaagaatctacaact	9	8	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102444222	A	A	102444222	1	1	53	0	1	0	0	0	0	0	0	0	6450	1479	51	5		5	GIN1	5	102444222	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	6204972	102444222	78471038	207	56260											
CEP120	153241	broad.mit.edu	37	chr5	122713858	122713858	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaataattatgtaagactCtcataaatggagtgcctcta	7	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122713858	A	A	122713858	1	1	53	0	1	0	0	0	0	0	0	0	3276	928	32	3		3	CEP120	5	122713858	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	20269636	122713858	58201402	208	56261											
MEGF10	84466	broad.mit.edu	37	chr5	126676045	126676045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcatgaaactactgaccCcttaaaataaagcatagatt	4	8	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126676045	A	A	126676045	1	1	53	0	1	0	0	0	0	0	0	0	9553	638	22	2		2	MEGF10	5	126676045	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3962187	126676045	54239215	209	56262											
SLC22A4	6583	broad.mit.edu	37	chr5	131667365	131667365	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagtgagagttgcatgcAtaagttttccccatgcatca	10	8	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131667365	C	C	131667365	1	2	53	0	1	0	0	0	0	0	0	0	14570	232	8	5		5	SLC22A4	5	131667365	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	4991320	131667365	49247895	210	56263											
MED7	9443	broad.mit.edu	37	chr5	156566062	156566062	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctctcttgcttggtggggTcggtattcatttataagatg	12	6	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156566062	A	A	156566062	2	1	53	1	0	0	0	0	0	0	0	1	9545	1654	58	5		5	MED7	5	156566062	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	24898697	156566062	24349198	211	56264											
CPLX2	10814	broad.mit.edu	37	chr5	175307073	175307074	+	3'UTR	DNP	CC	AA	AA													gcctcctgccccagcctactCcacctgttactacttctttt							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	175307074	AA	AA	175307073	1	1	53	0	1	0	0	0	0	0	0	0	3837	870	30	3		3	CPLX2	5	175307073	3'UTR	DNP	CC	TCGA-17-Z021-01A-01W-0746-08	18741011	175307073	5608187	212	56265											
SSR1	6745	broad.mit.edu	37	chr6	7290123	7290128	+	In_Frame_Del	DEL	TCTGTG	-	-													atcagatcccactgatctctTctgtgcccgtttcctgggca					rs138203075		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7290128	-	-	7290123	7	5	53	1	0	1	0	1	0	0	0	0	15308	1792	62	0	29	0	SSR1	6	7290123	In_Frame_Del	DEL	TCTGTG	TCGA-17-Z021-01A-01W-0746-08		7290123	163824944	213	56266											
RIOK1	83732	broad.mit.edu	37	chr6	7396953	7396953	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagataagctaaatgttactGattccgtcataaataaagtc	6	6	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7396953	T	T	7396953	3	4	53	1	0	0	0	0	1	0	0	0	13488	1290	45	3	399	3	RIOK1	6	7396953	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	106830	7396953	163718114	214	56267											
JARID2	3720	broad.mit.edu	37	chr6	15487658	15487658	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgacagccgccgggagcAggcttcagctaaccaccccg	13	16	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15487658	T	T	15487658	3	4	53	1	0	0	0	0	1	0	0	0	8015	188	7	5	813	5	JARID2	6	15487658	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	8090705	15487658	155627409	215	56268											
KIF13A	63971	broad.mit.edu	37	chr6	17873668	17873668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaataatcaaaggcaaataCctgaatgaaagaacaaaata	6	6	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17873668	A	A	17873668	3	1	53	1	0	0	0	0	1	0	0	0	8344	521	18	3	5426	3	KIF13A	6	17873668	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2386010	17873668	153241399	216	56269											
BTN3A2	11118	broad.mit.edu	37	chr6	26370770	26370770	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcggctccggggagggtgtAtcctgcatcatcagaaattc	14	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26370770	T	T	26370770	2	4	53	1	0	0	0	0	0	0	0	1	1573	436	16	5		5	BTN3A2	6	26370770	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	8497102	26370770	144744297	217	56270											
HLA-G	3135	broad.mit.edu	37	chr6	29944500	29944500	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcggctgcgctgggcgcccGagcgcgttctcaggactgcg	17	15	1	0	rs149053842	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29944500	T	T	29944500	1	4	53	0	1	0	0	0	0	0	0	0	7279	1073	37	3		3	HLA-G	6	29944500	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3573730	29944500	141170567	218	56271											
TRIM15	89870	broad.mit.edu	37	chr6	30131594	30131594	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcctccccgcgctctccCagatgggggcccaatcctcg	10	19	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30131594	T	T	30131594	4	4	53	1	0	0	0	0	0	1	0	0	16614	595	21	4	135	4	TRIM15	6	30131594	Nonsense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	187094	30131594	140983473	219	56272											
NOTCH4	4855	broad.mit.edu	37	chr6	32184944	32184944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttacctgggagacacttgCagtggaaggctccaggctgg	15	9	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32184944	A	A	32184944	3	1	53	1	0	0	0	0	1	0	0	0	10646	710	25	3	4371	3	NOTCH4	6	32184944	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2053350	32184944	138930123	220	56273											
DNAH8	1769	broad.mit.edu	37	chr6	38866152	38866152	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgcaatgactcatcttaTtaaggtcctaactattgcct	6	9	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38866152	C	C	38866152	3	2	53	1	0	0	0	0	1	0	0	0	4647	1493	52	5	8634	5	DNAH8	6	38866152	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	6681208	38866152	132248915	221	56274											
TRERF1	55809	broad.mit.edu	37	chr6	42398464	42398464	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaacatggtgaaaccccGtctctactaaaatacaaaaa	6	11	1	1	rs147905235	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42398464	A	A	42398464	1	1	53	0	1	0	0	0	0	0	0	0	16599	1160	40	4		4	TRERF1	6	42398464	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3532312	42398464	128716603	222	56275											
XPO5	57510	broad.mit.edu	37	chr6	43496918	43496918	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcactggcccaaaaagtagGaataaaaaaataggaaggag	11	5	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43496918	T	T	43496918	1	4	53	0	1	0	0	0	0	0	0	0	17574	1189	41	3		3	XPO5	6	43496918	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1098454	43496918	127618149	223	56276											
TFAP2D	83741	broad.mit.edu	37	chr6	50686809	50686809	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttattaagggctctGtggaggcccagtgtgggctt	13	7	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50686809	A	A	50686809	3	1	53	1	0	0	0	0	1	0	0	0	15913	1377	48	4	554	4	TFAP2D	6	50686809	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7189891	50686809	120428258	224	56277											
PKHD1	5314	broad.mit.edu	37	chr6	51514062	51514062	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatacatccttaggattacaCatatccctatggtagcaatt	5	9	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51514062	G	G	51514062	1	3	53	0	1	0	0	0	0	0	0	0	12066	493	17	4		4	PKHD1	6	51514062	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	827253	51514062	119601005	225	56278											
PRIM2	5558	broad.mit.edu	37	chr6	57327689	57327690	+	Intron	INS	-	A	A													gtagagtctttaacaaatacINSaaaaaaggaagcttccagtt					rs142591900	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57327690	A	A	57327689	6	5	53	0	1	1	1	0	0	0	0	0	12597	493	17	0		0	PRIM2	6	57327689	Intron	INS	-	TCGA-17-Z021-01A-01W-0746-08	5813627	57327689	113787378	226	56279											
PRIM2	5558	broad.mit.edu	37	chr6	57404489	57404489	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagtatttattggtgagaGagcttggaatgtttctgtgt	14	2	1	3	rs111838745		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57404489	A	A	57404489	1	1	53	0	1	0	0	0	0	0	0	0	12597	957	33	4		4	PRIM2	6	57404489	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	76800	57404489	113710578	227	56280											
EYS	346007	broad.mit.edu	37	chr6	65753507	65753507	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatgagtttaacgtttttaGatttcatatgtaagtgagat	8	3	1	3	rs78643016	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65753507	A	A	65753507	1	1	53	0	1	0	0	0	0	0	0	0	5375	957	33	4		4	EYS	6	65753507	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	8349018	65753507	105361560	228	56281											
EYS	346007	broad.mit.edu	37	chr6	66104668	66104668	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctttcatattcttcttagGaatctctttcctttgactgt	4	9	5	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66104668	T	T	66104668	1	4	53	0	1	0	0	0	0	0	0	0	5375	1189	41	3		3	EYS	6	66104668	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	351161	66104668	105010399	229	56282											
COL19A1	1310	broad.mit.edu	37	chr6	70745809	70745809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttagggagatacaggacCcccaggaccaccagccttac	9	13	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70745809	T	T	70745809	3	4	53	1	0	0	0	0	1	0	0	0	3708	623	22	4	1198	4	COL19A1	6	70745809	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4641141	70745809	100369258	230	56283											
KCNQ5	56479	broad.mit.edu	37	chr6	73904438	73904438	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaatgagttcagtgcccaGactttctacgcgcttagccc	8	14	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73904438	T	T	73904438	3	4	53	1	0	0	0	0	1	0	0	0	8156	933	33	3	2215	3	KCNQ5	6	73904438	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3158629	73904438	97210629	231	56284											
DOPEY1	23033	broad.mit.edu	37	chr6	83846908	83846908	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtgagccaagtacaactCatcacatcaaaaggaaatgg	8	9	4	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83846908	A	A	83846908	2	1	53	1	0	0	0	0	0	0	0	1	4747	813	29	3		3	DOPEY1	6	83846908	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	9942470	83846908	87268159	232	56285											
C6orf168	84553	broad.mit.edu	37	chr6	99729010	99729010	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgacccagggagtggcaggtCccaaggaagagggtcagtga	17	9	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99729010	A	A	99729010	1	1	53	0	1	0	0	0	0	0	0	0	2366	870	30	3		3	C6orf168	6	99729010	3'UTR	SNP	C	TCGA-17-Z021-01A-01W-0746-08	15882102	99729010	71386057	233	56286											
NKAIN2	154215	broad.mit.edu	37	chr6	124979487	124979487	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggtgtttgctggagtaCcagtacatagaagtggctca	13	7	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124979487	A	A	124979487	4	1	53	1	0	0	0	0	0	1	0	0	10531	518	18	3	443	3	NKAIN2	6	124979487	Nonsense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	25250477	124979487	46135580	234	56287											
THEMIS	387357	broad.mit.edu	37	chr6	128151040	128151040	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttgtgatttcttccataGtaaggtatggagttttatca	8	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128151040	A	A	128151040	3	1	53	1	0	0	0	0	1	0	0	0	15983	1029	36	4	1772	4	THEMIS	6	128151040	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3171553	128151040	42964027	235	56288											
LTV1	84946	broad.mit.edu	37	chr6	144167209	144167209	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagacaatgaagaaaggcgaGcagaacagaggaagtatgga	14	4	0	5			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144167209	A	A	144167209	3	1	53	1	0	0	0	0	1	0	0	0	9168	971	34	4	167	4	LTV1	6	144167209	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	16016169	144167209	26947858	236	56289											
RAET1G	353091	broad.mit.edu	37	chr6	150240955	150240955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaagagagtgagggtctGtggagaaaggcaggtgaggg	20	3	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150240955	T	T	150240955	1	4	53	0	1	0	0	0	0	0	0	0	13108	1392	48	3		3	RAET1G	6	150240955	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6073746	150240955	20874112	237	56290											
C6orf97	80129	broad.mit.edu	37	chr6	151917799	151917799	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacagctttatcgggacacGccagaagaagaaagatgaaa	11	7	0	6			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151917799	C	C	151917799	1	2	53	0	1	0	0	0	0	0	0	0	2399	1102	38	4		4	C6orf97	6	151917799	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1676844	151917799	19197268	238	56291											
SYNE1	23345	broad.mit.edu	37	chr6	152631798	152631798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatagacatttttttctGtttcttttttttttcttttt	3	4	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152631798	T	T	152631798	1	4	53	0	1	0	0	0	0	0	0	0	15564	1392	48	3		3	SYNE1	6	152631798	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	713999	152631798	18483269	239	56292											
SLC22A1	6580	broad.mit.edu	37	chr6	160557015	160557015	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaggaaggctacataggAagcgatggctcccttttggt	13	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160557015	G	G	160557015	1	3	53	0	1	0	0	0	0	0	0	0	14553	261	9	5		5	SLC22A1	6	160557015	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	7925217	160557015	10558052	240	56293											
PDE10A	10846	broad.mit.edu	37	chr6	165806002	165806002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaagagtctaaaaatgggCtactattgatttattaagcc	7	6	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165806002	A	A	165806002	1	1	53	0	1	0	0	0	0	0	0	0	11724	812	28	3		3	PDE10A	6	165806002	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5248987	165806002	5309065	241	56294											
MLLT4	4301	broad.mit.edu	37	chr6	168349199	168349199	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacacttttctcacctctcaAggaggacacactgagttctg	7	13	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168349199	T	T	168349199	1	4	53	0	1	0	0	0	0	0	0	0	9722	87	3	5		5	MLLT4	6	168349199	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2543197	168349199	2765868	242	56295											
DGKB	1607	broad.mit.edu	37	chr7	14353595	14353595	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctcctcaagtgggtccctCacccctgacccccgagcagt	9	19	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14353595	G	G	14353595	1	3	53	0	1	0	0	0	0	0	0	0	4506	841	29	4		4	DGKB	7	14353595	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08		14353595	144785068	243	56296											
TMEM195	392636	broad.mit.edu	37	chr7	15405278	15405278	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattaacatgcattagcttTaaatatgctctttatatgtt	4	6	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15405278	A	A	15405278	1	1	53	0	1	0	0	0	0	0	0	0	16240	1769	61	5		5	TMEM195	7	15405278	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1051683	15405278	143733385	244	56297											
SP4	6671	broad.mit.edu	37	chr7	21527378	21527383	+	Intron	DEL	TGATGG	-	-													gttgatgatgatgatgatgaTgatggtggtggtggtggtgg					rs111895818		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21527383	-	-	21527378	6	5	53	0	1	1	0	1	0	0	0	0	15080	1479	51	0		0	SP4	7	21527378	Intron	DEL	TGATGG	TCGA-17-Z021-01A-01W-0746-08	6122100	21527378	137611285	245	56298											
CREB5	9586	broad.mit.edu	37	chr7	28735775	28735775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtaccattcggctgcctgGgagcctccaaagctctgttg	11	14	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28735775	T	T	28735775	1	4	53	0	1	0	0	0	0	0	0	0	3892	1247	43	2		2	CREB5	7	28735775	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7208397	28735775	130402888	246	56299											
CHN2	1124	broad.mit.edu	37	chr7	29251995	29251995	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaatcttaacctatggctGtgatttgtgggcctgaagaa	11	6	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29251995	C	C	29251995	1	2	53	0	1	0	0	0	0	0	0	0	3394	1392	48	4		4	CHN2	7	29251995	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	516220	29251995	129886668	247	56300											
BMPER	168667	broad.mit.edu	37	chr7	34182746	34182746	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaattttaatgggccaatCaggttttcccatctacgacc	7	11	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34182746	T	T	34182746	1	4	53	0	1	0	0	0	0	0	0	0	1474	841	29	4		4	BMPER	7	34182746	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4930751	34182746	124955917	248	56301											
AMPH	273	broad.mit.edu	37	chr7	38469436	38469436	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaatgatctggatatttAcctaccggctgtaccaaatc	7	11	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38469436	G	G	38469436	1	3	53	0	1	0	0	0	0	0	0	0	588	406	14	5		5	AMPH	7	38469436	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	4286690	38469436	120669227	249	56302											
VPS41	27072	broad.mit.edu	37	chr7	38857280	38857280	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccaagagatgatgatcaTcagatttcattacatttgtc	6	10	3	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38857280	G	G	38857280	1	3	53	0	1	0	0	0	0	0	0	0	17337	1450	50	5		5	VPS41	7	38857280	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	387844	38857280	120281383	250	56303											
ZNF716	441234	broad.mit.edu	37	chr7	57529296	57529296	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataagaggattcatactggaGagaaaccctacacttgtgaa	9	7	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57529296	C	C	57529296	3	2	53	1	0	0	0	0	1	0	0	0	18247	943	33	4	1143	4	ZNF716	7	57529296	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	18672016	57529296	101609367	251	56304											
ZNF107	51427	broad.mit.edu	37	chr7	64167568	64167568	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggagaaaattcatactGgagggaaactcaacaaatgt	9	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64167568	T	T	64167568	4	4	53	1	0	0	0	0	0	1	0	0	17841	1349	47	2	892	2	ZNF107	7	64167568	Nonsense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6638272	64167568	94971095	252	56305											
MAGI2	9863	broad.mit.edu	37	chr7	78496207	78496207	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgggtgaaggacatgaacaGacacttctcaaaagaagaca	11	7	1	5			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78496207	C	C	78496207	1	2	53	0	1	0	0	0	0	0	0	0	9283	957	33	4		4	MAGI2	7	78496207	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	14328639	78496207	80642456	253	56306											
ABCB4	5244	broad.mit.edu	37	chr7	87035723	87035723	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attctcggcaatgctgcagtCaaataggataggctcctgag	11	9	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87035723	T	T	87035723	3	4	53	1	0	0	0	0	1	0	0	0	43	826	29	4	484	4	ABCB4	7	87035723	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	8539516	87035723	72102940	254	56307											
ADAM22	53616	broad.mit.edu	37	chr7	87762154	87762154	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtttgaactgtgaacagtAagcatttttcatttcctttt	6	6	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87762154	T	T	87762154	1	4	53	0	1	0	0	0	0	0	0	0	244	377	13	5		5	ADAM22	7	87762154	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	726431	87762154	71376509	255	56308											
COL1A2	1278	broad.mit.edu	37	chr7	94057501	94057501	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaaatatggggtagacaatCaaaaatgttacttatgagag	9	3	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94057501	A	A	94057501	1	1	53	0	1	0	0	0	0	0	0	0	3710	841	29	3		3	COL1A2	7	94057501	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	6295347	94057501	65081162	256	56309											
PTCD1	26024	broad.mit.edu	37	chr7	99031021	99031021	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcatctgcctctcaaaCaggtccagggcttcaaccag	8	14	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99031021	A	A	99031021	2	1	53	1	0	0	0	0	0	0	0	1	12833	465	17	3		3	PTCD1	7	99031021	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4973520	99031021	60107642	257	56310											
COG5	10466	broad.mit.edu	37	chr7	106870997	106870997	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaattttatgaagttcaacCtgcacagaaaggatttattt	7	6	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106870997	A	A	106870997	1	1	53	0	1	0	0	0	0	0	0	0	3693	696	24	2		2	COG5	7	106870997	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	7839976	106870997	52267666	258	56311											
DOCK4	9732	broad.mit.edu	37	chr7	111418396	111418396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtagcgtatatacatctcCtccttgttcagttcagtctt	6	10	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111418396	A	A	111418396	3	1	53	1	0	0	0	0	1	0	0	0	4729	680	24	2	2384	2	DOCK4	7	111418396	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4547399	111418396	47720267	259	56312											
FOXP2	93986	broad.mit.edu	37	chr7	114294037	114294037	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacttgcacatgcgaccCtcagagcccaaaccatctcc	5	19	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114294037	A	A	114294037	2	1	53	1	0	0	0	0	0	0	0	1	6087	668	24	2		2	FOXP2	7	114294037	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2875641	114294037	44844626	260	56313											
ST7	7982	broad.mit.edu	37	chr7	116637754	116637754	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacagggtgctgattggtGtgtttacaaaccttgagcta	12	7	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116637754	A	A	116637754	1	1	53	0	1	0	0	0	0	0	0	0	15347	1392	48	4		4	ST7	7	116637754	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2343717	116637754	42500909	261	56314											
ING3	54556	broad.mit.edu	37	chr7	120607779	120607779	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaagtgtttcaggattaAtgaatcatacagtttcttta	6	4	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120607779	G	G	120607779	1	3	53	0	1	0	0	0	0	0	0	0	7807	116	4	5		5	ING3	7	120607779	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3970025	120607779	38530884	262	56315											
POT1	25913	broad.mit.edu	37	chr7	124510999	124510999	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcgaacaatatctccatttTtataaattattggaagggct	7	6	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124510999	A	A	124510999	3	1	53	1	0	0	0	0	1	0	0	0	12355	1841	64	5	1735	5	POT1	7	124510999	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	3903220	124510999	34627664	263	56316											
TSGA13	114960	broad.mit.edu	37	chr7	130363912	130363912	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgagtactattctccAtgttaagttaacttccttct	4	9	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130363912	C	C	130363912	1	2	53	0	1	0	0	0	0	0	0	0	16744	232	8	5		5	TSGA13	7	130363912	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	5852913	130363912	28774751	264	56317											
PLXNA4	91584	broad.mit.edu	37	chr7	131925726	131925726	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaatagctgaggagaaaAgacagatcaaagggaagggc	14	5	1	5			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131925726	C	C	131925726	1	2	53	0	1	0	0	0	0	0	0	0	12217	87	3	5		5	PLXNA4	7	131925726	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1561814	131925726	27212937	265	56318											
AKR1B10	57016	broad.mit.edu	37	chr7	134222956	134222956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgcataggttctgatccGtttccatatccagaggaatg	9	10	1	2	rs149850087		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134222956	T	T	134222956	3	4	53	1	0	0	0	0	1	0	0	0	467	1145	40	3	782	3	AKR1B10	7	134222956	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2297230	134222956	24915707	266	56319											
AKR1B15	441282	broad.mit.edu	37	chr7	134261847	134261847	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcagtggagtgggggaCaggcagaccttctcactagg	14	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134261847	G	G	134261847	1	3	53	0	1	0	0	0	0	0	0	0	468	493	17	4		4	AKR1B15	7	134261847	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	38891	134261847	24876816	267	56320											
FAM180A	389558	broad.mit.edu	37	chr7	135433137	135433137	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagcatcaaggaattgacAgagattagacaaaaggagag	12	4	1	5			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135433137	G	G	135433137	1	3	53	0	1	0	0	0	0	0	0	0	5552	203	7	5		5	FAM180A	7	135433137	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1171290	135433137	23705526	268	56321											
AKR1D1	6718	broad.mit.edu	37	chr7	137789996	137789996	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacagtcacccttataaacAttcattcttgcttcttgtga	4	11	5	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137789996	G	G	137789996	1	3	53	0	1	0	0	0	0	0	0	0	473	232	8	5		5	AKR1D1	7	137789996	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2356859	137789996	21348667	269	56322											
ZC3HAV1L	92092	broad.mit.edu	37	chr7	138713396	138713396	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttacttcttcacagtgaagCatcgcaaaaccatatcgctg	6	12	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138713396	G	G	138713396	1	3	53	0	1	0	0	0	0	0	0	0	17702	725	25	4		4	ZC3HAV1L	7	138713396	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	923400	138713396	20425267	270	56323											
TBXAS1	6916	broad.mit.edu	37	chr7	139565518	139565518	+	Intron	SNP	G	A	A													gaggaggaggaggaagaggaGgaggaggaggaagaggagga							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139565518	A	A	139565518	1	1	53	0	1	0	0	0	0	0	0	0	15786	1015	35	4		4	TBXAS1	7	139565518	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	852122	139565518	19573145	271	56324	269	2									
TBXAS1	6916	broad.mit.edu	37	chr7	139565522	139565522	+	Intron	SNP	G	A	A													aggaggaggaagaggaggagGaggaggaagaggaggaggag							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139565522	A	A	139565522	1	1	53	0	1	0	0	0	0	0	0	0	15786	1189	41	4		4	TBXAS1	7	139565522	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4	139565522	19573141	272	56325	269	2									
KEL	3792	broad.mit.edu	37	chr7	142650431	142650431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacacctgaggaatggccCctcctcttcctttcttcccc	5	19	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142650431	A	A	142650431	1	1	53	0	1	0	0	0	0	0	0	0	8212	638	22	2		2	KEL	7	142650431	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3084909	142650431	16488232	273	56326											
PIP	5304	broad.mit.edu	37	chr7	142836317	142836317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaaggagggaactaccCaccagccaccagggaggaga	13	12	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142836317	A	A	142836317	1	1	53	0	1	0	0	0	0	0	0	0	12030	609	21	2		2	PIP	7	142836317	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	185886	142836317	16302346	274	56327											
CNTNAP2	26047	broad.mit.edu	37	chr7	146818111	146818111	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatatggccacacatcagtGatgacaggaagtttgctgga	11	7	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146818111	C	C	146818111	2	2	53	1	0	0	0	0	0	0	0	1	3679	1277	45	4		4	CNTNAP2	7	146818111	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3981794	146818111	12320552	275	56328											
CNTNAP2	26047	broad.mit.edu	37	chr7	147336343	147336343	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactgacagtgccgagtaCtgcgagcagtatgtctccta	10	11	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147336343	A	A	147336343	4	1	53	1	0	0	0	0	0	1	0	0	3679	576	20	3	2093	3	CNTNAP2	7	147336343	Nonsense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	518232	147336343	11802320	276	56329											
CNTNAP2	26047	broad.mit.edu	37	chr7	147880868	147880868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcatgagccaccatgcCcagcctacttatttgctttt	6	13	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147880868	A	A	147880868	1	1	53	0	1	0	0	0	0	0	0	0	3679	638	22	2		2	CNTNAP2	7	147880868	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	544525	147880868	11257795	277	56330											
CUL1	8454	broad.mit.edu	37	chr7	148496483	148496483	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagtccctgtgatcaaggtAcaggactttacatagcagtc	10	10	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148496483	T	T	148496483	1	4	53	0	1	0	0	0	0	0	0	0	4087	406	14	5		5	CUL1	7	148496483	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	615615	148496483	10642180	278	56331											
NCAPG2	54892	broad.mit.edu	37	chr7	158438169	158438169	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgacagcacctgtgaggtGcaccagccaccttccagatg	10	14	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158438169	A	A	158438169	1	1	53	0	1	0	0	0	0	0	0	0	10303	1334	46	4		4	NCAPG2	7	158438169	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	9941686	158438169	700494	279	56332											
CSMD1	64478	broad.mit.edu	37	chr8	3257093	3257093	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctattagatccaatgagacaGaaggatatgccataacaata	7	7	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3257093	T	T	3257093	1	4	53	0	1	0	0	0	0	0	0	0	3978	957	33	3		3	CSMD1	8	3257093	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		3257093	143106929	280	56333											
TUSC3	7991	broad.mit.edu	37	chr8	15542126	15542126	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcgttcctcccggactGgtcttatgaaaggagggatg	15	9	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15542126	A	A	15542126	1	1	53	0	1	0	0	0	0	0	0	0	16904	1363	47	4		4	TUSC3	8	15542126	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	12285033	15542126	130821896	281	56334											
EBF2	64641	broad.mit.edu	37	chr8	25716037	25716037	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacccttggcaacaaagaaaAagcccaggtaaatcaacagg	8	10	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25716037	T	T	25716037	1	4	53	0	1	0	0	0	0	0	0	0	4921	29	1	5		5	EBF2	8	25716037	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	10173911	25716037	120647985	282	56335											
TRIM35	23087	broad.mit.edu	37	chr8	27151106	27151106	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagtggtgcgccagtagtcCaactacctgggaggccaagg	14	11	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27151106	G	G	27151106	1	3	53	0	1	0	0	0	0	0	0	0	16633	609	21	4		4	TRIM35	8	27151106	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1435069	27151106	119212916	283	56336											
UNC5D	137970	broad.mit.edu	37	chr8	35588838	35588838	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaggctggagaatcgcttGaacctggaaggcagaggatg	16	7	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35588838	A	A	35588838	1	1	53	0	1	0	0	0	0	0	0	0	17121	1305	45	4		4	UNC5D	8	35588838	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	8437732	35588838	110775184	284	56337											
GOT1L1	137362	broad.mit.edu	37	chr8	37794329	37794329	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattctagtatcttcttcCaagtcactggtgtataaacc	6	9	4	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37794329	A	A	37794329	3	1	53	1	0	0	0	0	1	0	0	0	6644	593	21	2		2	GOT1L1	8	37794329	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2205491	37794329	108569693	285	56338											
PRKDC	5591	broad.mit.edu	37	chr8	48689457	48689457	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctcttagcgtaacataTtttctgtcgggggtaccaat	8	9	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48689457	G	G	48689457	3	3	53	1	0	0	0	0	1	0	0	0	12627	1493	52	5	264	5	PRKDC	8	48689457	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	10895128	48689457	97674565	286	56339											
NKAIN3	286183	broad.mit.edu	37	chr8	63830988	63830988	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttggcatagattcttaagGtacacattttttcccttttg	6	8	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63830988	A	A	63830988	1	1	53	0	1	0	0	0	0	0	0	0	10532	1276	44	4		4	NKAIN3	8	63830988	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	15141531	63830988	82533034	287	56340											
ADHFE1	137872	broad.mit.edu	37	chr8	67372798	67372798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcagggatggaaaccagGgctccccggtggttctcggg	16	11	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67372798	T	T	67372798	1	4	53	0	1	0	0	0	0	0	0	0	314	1247	43	2		2	ADHFE1	8	67372798	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3541810	67372798	78991224	288	56341											
SLCO5A1	81796	broad.mit.edu	37	chr8	70585416	70585416	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaataaacccaacgaatttGaggccggcagccaaaccaaa	7	11	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70585416	C	C	70585416	2	2	53	1	0	0	0	0	0	0	0	1	14845	1277	45	4		4	SLCO5A1	8	70585416	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3212618	70585416	75778606	289	56342											
SLCO5A1	81796	broad.mit.edu	37	chr8	70585515	70585515	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttgccagagcatgcaGgtggtgtcaatgactgctcc	12	11	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70585515	C	C	70585515	2	2	53	1	0	0	0	0	0	0	0	1	14845	987	35	4		4	SLCO5A1	8	70585515	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	99	70585515	75778507	290	56343											
ZFHX4	79776	broad.mit.edu	37	chr8	77616704	77616704	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacagtgacgtggaaaatctAacaggggagatcgtttacca	12	7	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77616704	T	T	77616704	2	4	53	1	0	0	0	0	0	0	0	1	17761	349	13	5		5	ZFHX4	8	77616704	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	7031189	77616704	68747318	291	56344											
ZFHX4	79776	broad.mit.edu	37	chr8	77617862	77617862	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttctcctttatcatccagTgtgctaaaatttattgaaaa	4	7	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77617862	A	A	77617862	3	1	53	1	0	0	0	0	1	0	0	0	17761	1693	59	5	1541	5	ZFHX4	8	77617862	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1158	77617862	68746160	292	56345											
ZNF704	619279	broad.mit.edu	37	chr8	81564665	81564665	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagactgctagcaagactaaTaaagaagaaaagagagaaga	10	4	0	7			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81564665	C	C	81564665	1	2	53	0	1	0	0	0	0	0	0	0	18234	1421	49	5		5	ZNF704	8	81564665	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	3946803	81564665	64799357	293	56346											
CNGB3	54714	broad.mit.edu	37	chr8	87679272	87679272	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtatgttgtctgcggtttGatatgggaagacgaggcgca	16	5	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87679272	T	T	87679272	3	4	53	1	0	0	0	0	1	0	0	0	3633	1299	45	3	1748	3	CNGB3	8	87679272	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6114607	87679272	58684750	294	56347											
CNBD1	168975	broad.mit.edu	37	chr8	88238981	88238981	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttctgtagatgtctattaGgtccgcttggtgcagagctg	13	7	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88238981	A	A	88238981	1	1	53	0	1	0	0	0	0	0	0	0	3623	1015	35	4		4	CNBD1	8	88238981	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	559709	88238981	58125041	295	56348											
TRPS1	7227	broad.mit.edu	37	chr8	116632198	116632198	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgttctttccagataCcttgctttctgtacctatag	5	10	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116632198	G	G	116632198	3	3	53	1	0	0	0	0	1	0	0	0	16718	507	18	4	3777	4	TRPS1	8	116632198	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	28393217	116632198	29731824	296	56349											
FAM135B	51059	broad.mit.edu	37	chr8	139187542	139187542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcctactttctcattctAttctagctacacttgccttc	2	15	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139187542	G	G	139187542	1	3	53	0	1	0	0	0	0	0	0	0	5495	464	16	5		5	FAM135B	8	139187542	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	22555344	139187542	7176480	297	56350											
COL22A1	169044	broad.mit.edu	37	chr8	139707044	139707044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggtaaccagccctgcgGgggaaggggacacaagagac	15	11	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139707044	T	T	139707044	1	4	53	0	1	0	0	0	0	0	0	0	3713	1247	43	2		2	COL22A1	8	139707044	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	519502	139707044	6656978	298	56351											
PTPRD	5789	broad.mit.edu	37	chr9	8376867	8376867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcatgcatttttgttatcCcaatatatgtaaattactgc	6	7	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8376867	T	T	8376867	1	4	53	0	1	0	0	0	0	0	0	0	12907	638	22	4		4	PTPRD	9	8376867	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08		8376867	132836564	299	56352											
PTPRD	5789	broad.mit.edu	37	chr9	8518184	8518184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcacaggttcgctgggagGcccccgcccaatgttattga	12	12	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8518184	T	T	8518184	3	4	53	1	0	0	0	0	1	0	0	0	12907	1203	42	3	4703	3	PTPRD	9	8518184	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	141317	8518184	132695247	300	56353											
IFNA10	3446	broad.mit.edu	37	chr9	21206859	21206859	+	Missense_Mutation	SNP	G	A	A													ctgctggatcatctcatggaGgacagagatggcttgagcct							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21206859	A	A	21206859	3	1	53	1	0	0	0	0	1	0	0	0	7602	1000	35	4	335	4	IFNA10	9	21206859	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	12688675	21206859	120006572	301	56354	270	2									
IFNA10	3446	broad.mit.edu	37	chr9	21206861	21206861	+	Missense_Mutation	SNP	A	G	G													gctggatcatctcatggaggAcagagatggcttgagccttc							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21206861	G	G	21206861	3	3	53	1	0	0	0	0	1	0	0	0	7602	275	10	5	337	5	IFNA10	9	21206861	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2	21206861	120006570	302	56355	270	2									
TEK	7010	broad.mit.edu	37	chr9	27169644	27169644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtaagtgatggagaggCcaccatttgtgatggtgtag	16	5	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27169644	A	A	27169644	1	1	53	0	1	0	0	0	0	0	0	0	15873	754	26	3		3	TEK	9	27169644	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5962783	27169644	114043787	303	56356											
PAX5	5079	broad.mit.edu	37	chr9	36882059	36882059	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtccagcgggggggacGtgtggagggtacccggggag	21	10	0	0	rs144574685	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36882059	A	A	36882059	2	1	53	1	0	0	0	0	0	0	0	1	11576	1136	40	4		4	PAX5	9	36882059	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	9712415	36882059	104331372	304	56357											
ZNF658	26149	broad.mit.edu	37	chr9	40784553	40784553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgacagggcccaggtgctgCcactcctcccgggtgaattc	12	15	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40784553	A	A	40784553	3	1	53	1	0	0	0	0	1	0	0	0	18196	740	26	3	3125	3	ZNF658	9	40784553	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3902494	40784553	100428878	305	56358											
TMC1	117531	broad.mit.edu	37	chr9	75446850	75446850	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatagcagcatgatttataAtcctttgggtatatacccaa	6	7	0	1	rs79317704		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75446850	G	G	75446850	1	3	53	0	1	0	0	0	0	0	0	0	16107	116	4	5		5	TMC1	9	75446850	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	34662297	75446850	65766581	306	56359											
NTRK2	4915	broad.mit.edu	37	chr9	87325897	87325897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattaattcagagtggatgGctgtaaagtgcatagagaaa	11	3	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87325897	T	T	87325897	1	4	53	0	1	0	0	0	0	0	0	0	10802	1218	42	3		3	NTRK2	9	87325897	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11879047	87325897	53887534	307	56360											
DAPK1	1612	broad.mit.edu	37	chr9	90262462	90262462	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacatttaagttggaaatGtcttgttgcctgtggtttgg	12	4	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90262462	A	A	90262462	1	1	53	0	1	0	0	0	0	0	0	0	4268	1392	48	4		4	DAPK1	9	90262462	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2936565	90262462	50950969	308	56361											
COL15A1	1306	broad.mit.edu	37	chr9	101802744	101802744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgggagggagggggtcCtgctgactctggaaatgccg	20	8	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101802744	A	A	101802744	1	1	53	0	1	0	0	0	0	0	0	0	3704	696	24	2		2	COL15A1	9	101802744	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	11540282	101802744	39410687	309	56362											
NR4A3	8013	broad.mit.edu	37	chr9	102596526	102596526	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaaaatttggataacacaGagaagaaccatgagaaagga	9	6	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102596526	T	T	102596526	1	4	53	0	1	0	0	0	0	0	0	0	10729	957	33	3		3	NR4A3	9	102596526	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	793782	102596526	38616905	310	56363											
CYLC2	1539	broad.mit.edu	37	chr9	105768118	105768118	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatacaaaggagaactcagcAgagatttataaaaatatata	7	4	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105768118	T	T	105768118	1	4	53	0	1	0	0	0	0	0	0	0	4175	203	7	5		5	CYLC2	9	105768118	3'UTR	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3171592	105768118	35445313	311	56364											
SVEP1	79987	broad.mit.edu	37	chr9	113231346	113231346	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagctttcacaggtgaaatGttccagattataataggttc	9	7	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113231346	C	C	113231346	3	2	53	1	0	0	0	0	1	0	0	0	15538	1377	48	4	7809	4	SVEP1	9	113231346	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7463228	113231346	27982085	312	56365											
KIAA0368	23392	broad.mit.edu	37	chr9	114233787	114233787	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cataggaggggtggggagaaGgggtctaacagttaaattag	17	3	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114233787	C	C	114233787	1	2	53	0	1	0	0	0	0	0	0	0	8241	1015	35	4		4	KIAA0368	9	114233787	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1002441	114233787	26979644	313	56366											
DFNB31	25861	broad.mit.edu	37	chr9	117266459	117266459	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactctctccaaaccacagcCttaccttgacggcctccgcg	7	18	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117266459	T	T	117266459	1	4	53	0	1	0	0	0	0	0	0	0	4495	696	24	4		4	DFNB31	9	117266459	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3032672	117266459	23946972	314	56367											
ASTN2	23245	broad.mit.edu	37	chr9	119497182	119497182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattatcaccatcttctataCcaccagcatcaccatcatta	1	15	5	0	rs114939979	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119497182	A	A	119497182	1	1	53	0	1	0	0	0	0	0	0	0	1069	522	18	3		3	ASTN2	9	119497182	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2230723	119497182	21716249	315	56368											
TLR4	7099	broad.mit.edu	37	chr9	120466837	120466837	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaagctgggagccctgCgtggaggtatgtggctggag	18	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120466837	A	A	120466837	4	1	53	1	0	0	0	0	0	1	0	0	16076	776	27	3	89	3	TLR4	9	120466837	Nonsense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	969655	120466837	20746594	316	56369											
NUP188	23511	broad.mit.edu	37	chr9	131752435	131752435	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcattgctgttctagccaAatacatctaccacaaacatg	4	13	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131752435	G	G	131752435	3	3	53	1	0	0	0	0	1	0	0	0	10853	14	1	5	2668	5	NUP188	9	131752435	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	11285598	131752435	9460996	317	56370											
EHMT1	79813	broad.mit.edu	37	chr9	140657119	140657119	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagctgacatgtgtctgtgtGacgttagggttggccaacgg	16	7	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140657119	T	T	140657119	1	4	53	0	1	0	0	0	0	0	0	0	5023	1305	45	3		3	EHMT1	9	140657119	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	8904684	140657119	556312	318	56371											
ITIH2	3698	broad.mit.edu	37	chr10	7785098	7785098	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttacgttttctttgtAtattttccagttgaaaatga	6	4	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7785098	T	T	7785098	1	4	53	0	1	0	0	0	0	0	0	0	7974	464	16	5		5	ITIH2	10	7785098	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08		7785098	127749649	319	56372											
FAM171A1	221061	broad.mit.edu	37	chr10	15331090	15331090	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggcctcccaaagcactgGgattacaggtgtgagccatc	11	12	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15331090	A	A	15331090	1	1	53	0	1	0	0	0	0	0	0	0	5535	1247	43	4		4	FAM171A1	10	15331090	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7545992	15331090	120203657	320	56373											
ITGA8	8516	broad.mit.edu	37	chr10	15561253	15561254	+	Intron	DNP	TC	CT	CT													taaattccctcaacagccccTctagtttaaaaggaaaacaa							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	15561254	CT	CT	15561253	1	2	53	0	1	0	0	0	0	0	0	0	7952	1566	54	5		5	ITGA8	10	15561253	Intron	DNP	TC	TCGA-17-Z021-01A-01W-0746-08	230163	15561253	119973494	321	56374											
ITGA8	8516	broad.mit.edu	37	chr10	15649500	15649500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcaacacatcatcaggttAgttgaagtcagggtcaagag	11	7	4	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15649500	T	T	15649500	1	4	53	0	1	0	0	0	0	0	0	0	7952	435	15	5		5	ITGA8	10	15649500	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	88247	15649500	119885247	322	56375											
SLC39A12	221074	broad.mit.edu	37	chr10	18292099	18292099	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttcctcttaaacttcaGgagactttgccgtgctctta	6	12	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18292099	T	T	18292099	5	4	53	1	0	0	0	0	0	0	1	0	14729	1014	35	2	1801	2	SLC39A12	10	18292099	Splice_Site	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2642599	18292099	117242648	323	56376											
KIAA1217	56243	broad.mit.edu	37	chr10	24471289	24471289	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagtatcgcttgaaccCggggaggtggggggagggct	21	7	0	1	rs114652569	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24471289	T	T	24471289	1	4	53	0	1	0	0	0	0	0	0	0	8286	667	23	4		4	KIAA1217	10	24471289	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	6179190	24471289	111063458	324	56377											
GAD2	2572	broad.mit.edu	37	chr10	26581331	26581331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggatgacggtcagtctcCagggaaatcgcttcctccgc	12	13	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26581331	A	A	26581331	1	1	53	0	1	0	0	0	0	0	0	0	6240	609	21	2		2	GAD2	10	26581331	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2110042	26581331	108953416	325	56378											
APBB1IP	54518	broad.mit.edu	37	chr10	26790049	26790049	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctctctcaggtaagtatGtgggaccagagatggcagga	13	9	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26790049	C	C	26790049	1	2	53	0	1	0	0	0	0	0	0	0	762	1392	48	4		4	APBB1IP	10	26790049	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	208718	26790049	108744698	326	56379											
A1CF	29974	broad.mit.edu	37	chr10	52595851	52595851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctggtagcagtttcctcCtcgccatggcagctgctcga	10	14	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52595851	A	A	52595851	3	1	53	1	0	0	0	0	1	0	0	0	2	681	24	2	1229	2	A1CF	10	52595851	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	25805802	52595851	82938896	327	56380											
ZNF365	22891	broad.mit.edu	37	chr10	64425875	64425875	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgttcatctctatccCtgtatctctgcagagaaagt	7	11	4	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64425875	T	T	64425875	1	4	53	0	1	0	0	0	0	0	0	0	17995	696	24	4		4	ZNF365	10	64425875	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	11830024	64425875	71108872	328	56381											
SGPL1	8879	broad.mit.edu	37	chr10	72633294	72633294	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcacttcggtgagaacggcTatgttgaagctaccaaacag	11	9	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72633294	A	A	72633294	3	1	53	1	0	0	0	0	1	0	0	0	14331	1522	53	5	1288	5	SGPL1	10	72633294	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	8207419	72633294	62901453	329	56382											
CDH23	64072	broad.mit.edu	37	chr10	73569700	73569700	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacggccatcatcggcatctAcatcctgagggacgaccagc	10	15	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73569700	G	G	73569700	3	3	53	1	0	0	0	0	1	0	0	0	3138	391	14	5	9429	5	CDH23	10	73569700	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	936406	73569700	61965047	330	56383											
OIT3	170392	broad.mit.edu	37	chr10	74658669	74658669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggcattgtgcaacgccaGgcttgtgccagcttcaatgg	13	11	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74658669	T	T	74658669	3	4	53	1	0	0	0	0	1	0	0	0	10944	991	35	2	315	2	OIT3	10	74658669	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1088969	74658669	60876078	331	56384											
GRID1	2894	broad.mit.edu	37	chr10	87534206	87534206	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaaaacaccaaaagcaatGgcaacaaaagccaaaattga	5	9	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87534206	A	A	87534206	1	1	53	0	1	0	0	0	0	0	0	0	6837	1363	47	4		4	GRID1	10	87534206	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	12875537	87534206	48000541	332	56385											
LIPK	643414	broad.mit.edu	37	chr10	90497582	90497582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaacatttgttttgttgCacagaagtgatgaaagttat	10	3	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90497582	A	A	90497582	1	1	53	0	1	0	0	0	0	0	0	0	8900	725	25	3		3	LIPK	10	90497582	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2963376	90497582	45037165	333	56386											
TMEM20	159371	broad.mit.edu	37	chr10	95691149	95691149	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagaccaatatctctgatgCacatcgatgcaaaaatcctc	5	11	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95691149	A	A	95691149	1	1	53	0	1	0	0	0	0	0	0	0	16245	725	25	3		3	TMEM20	10	95691149	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5193567	95691149	39843598	334	56387											
PLCE1	51196	broad.mit.edu	37	chr10	95927480	95927480	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattgttcagttcccacctAtgagtgagaacatgtggtgt	10	8	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95927480	G	G	95927480	1	3	53	0	1	0	0	0	0	0	0	0	12129	464	16	5		5	PLCE1	10	95927480	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	236331	95927480	39607267	335	56388											
SMC3	9126	broad.mit.edu	37	chr10	112361781	112361781	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagtacagccatgttaacAaaaaggctttggatcagttt	9	6	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112361781	C	C	112361781	3	2	53	1	0	0	0	0	1	0	0	0	14898	131	5	5	3048	5	SMC3	10	112361781	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	16434301	112361781	23172966	336	56389											
TECTB	6975	broad.mit.edu	37	chr10	114044408	114044408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttacaatggggtccaCgaaggaggttactaccaatt	11	8	0	0	rs146576556		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114044408	A	A	114044408	3	1	53	1	0	0	0	0	1	0	0	0	15870	535	19	3	198	3	TECTB	10	114044408	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1682627	114044408	21490339	337	56390											
FGFR2	2263	broad.mit.edu	37	chr10	123243279	123243279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttgaacgttggtctctggGagggcactgcatgccaacag	14	10	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123243279	T	T	123243279	3	4	53	1	0	0	0	0	1	0	0	0	5923	1174	41	3	343	3	FGFR2	10	123243279	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	9198871	123243279	12291468	338	56391											
ATE1	11101	broad.mit.edu	37	chr10	123650944	123650944	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagagaccatattgaataTacctggcttgcaggtacagc	11	8	0	2	rs114534832	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123650944	A	A	123650944	1	1	53	0	1	0	0	0	0	0	0	0	1082	1421	49	5		5	ATE1	10	123650944	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	407665	123650944	11883803	339	56392											
HTRA1	5654	broad.mit.edu	37	chr10	124249156	124249156	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaccaggtaagggtgttctCgcctgcagaggtgagttctc	13	11	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124249156	A	A	124249156	1	1	53	0	1	0	0	0	0	0	0	0	7523	899	31	3		3	HTRA1	10	124249156	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	598212	124249156	11285591	340	56393											
CPXM2	119587	broad.mit.edu	37	chr10	125590394	125590394	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctctctctctgtgtGtgtgtgtgtgtgtgtgtgtg	13	8	4	0	rs71474793		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125590394	C	C	125590394	1	2	53	0	1	0	0	0	0	0	0	0	3870	1392	48	4		4	CPXM2	10	125590394	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1341238	125590394	9944353	341	56394											
ADAM12	8038	broad.mit.edu	37	chr10	127760135	127760135	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agactccctgacttccggcaGgttaaacaggcacaccccca	8	16	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127760135	C	C	127760135	3	2	53	1	0	0	0	0	1	0	0	0	236	991	35	4	1642	4	ADAM12	10	127760135	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2169741	127760135	7774612	342	56395											
RRM1	6240	broad.mit.edu	37	chr11	4197386	4197386	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgcccactgtctggcacTccctagtgagatgaacccgg	11	15	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4197386	C	C	4197386	1	2	53	0	1	0	0	0	0	0	0	0	13792	1566	54	5		5	RRM1	11	4197386	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08		4197386	130809130	343	56396											
CNGA4	1262	broad.mit.edu	37	chr11	6265516	6265516	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgaacggctggagtggcaGactcgagagtggccaatgcc	15	9	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6265516	T	T	6265516	3	4	53	1	0	0	0	0	1	0	0	0	3631	933	33	3	1627	3	CNGA4	11	6265516	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2068130	6265516	128741000	344	56397											
TRIM3	10612	broad.mit.edu	37	chr11	6472762	6472762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagggaggagacccccCcaccaccatttattcagtca	8	15	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6472762	A	A	6472762	1	1	53	0	1	0	0	0	0	0	0	0	16628	638	22	2		2	TRIM3	11	6472762	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	207246	6472762	128533754	345	56398											
NLRP14	338323	broad.mit.edu	37	chr11	7067906	7067906	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatttatgcaaagggatggtGatcgcattactcactgttgg	11	6	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7067906	C	C	7067906	3	2	53	1	0	0	0	0	1	0	0	0	10571	1290	45	4	1980	4	NLRP14	11	7067906	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	595144	7067906	127938610	346	56399											
STK33	65975	broad.mit.edu	37	chr11	8513817	8513817	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctaccaagcaaatggaaaAcaaaaaaaaaagcaggggtt	8	6	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8513817	G	G	8513817	1	3	53	0	1	0	0	0	0	0	0	0	15418	58	2	5		5	STK33	11	8513817	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1445911	8513817	126492699	347	56400											
STK33	65975	broad.mit.edu	37	chr11	8513851	8513851	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggggttgcaatcctagtctCtgataaaacagactttaaac	8	8	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8513851	G	G	8513851	1	3	53	0	1	0	0	0	0	0	0	0	15418	928	32	4		4	STK33	11	8513851	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	34	8513851	126492665	348	56401											
NAV2	89797	broad.mit.edu	37	chr11	20099035	20099035	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attttcatctttaagagccaGacaccttctaagcactcttg	5	11	4	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20099035	C	C	20099035	1	2	53	0	1	0	0	0	0	0	0	0	10278	957	33	4		4	NAV2	11	20099035	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11585184	20099035	114907481	349	56402											
KIF18A	81930	broad.mit.edu	37	chr11	28057916	28057916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagggatagctacttcacaCaacattttcagacaattatc	6	9	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28057916	A	A	28057916	3	1	53	1	0	0	0	0	1	0	0	0	8350	477	17	3	468	3	KIF18A	11	28057916	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	7958881	28057916	106948600	350	56403											
METT5D1	196074	broad.mit.edu	37	chr11	28188269	28188269	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactttgggaggccaaggtgGgcagatcacctgaggtcagg	16	9	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28188269	A	A	28188269	1	1	53	0	1	0	0	0	0	0	0	0	9585	1247	43	4		4	METT5D1	11	28188269	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	130353	28188269	106818247	351	56404											
SLC1A2	6506	broad.mit.edu	37	chr11	35298234	35298234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagtgactgccaaggaCcaggacctacaatggcagac	10	11	0	2	rs116382328	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35298234	A	A	35298234	1	1	53	0	1	0	0	0	0	0	0	0	14545	522	18	3		3	SLC1A2	11	35298234	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	7109965	35298234	99708282	352	56405											
PAMR1	25891	broad.mit.edu	37	chr11	35455829	35455829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccacagtgatagatgcCtttgcctctatcttatttaa	6	9	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35455829	A	A	35455829	1	1	53	0	1	0	0	0	0	0	0	0	11507	696	24	2		2	PAMR1	11	35455829	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	157595	35455829	99550687	353	56406											
C11orf94	143678	broad.mit.edu	37	chr11	45928366	45928366	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacttggggcacctcttaGgggcgtctccactgtcaggg	15	11	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45928366	A	A	45928366	1	1	53	0	1	0	0	0	0	0	0	0	1686	1015	35	4		4	C11orf94	11	45928366	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	10472537	45928366	89078150	354	56407											
TRIM48	79097	broad.mit.edu	37	chr11	55035787	55035787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaatgaaagatgcatcttGtgaactgcactaaatctttc	6	8	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55035787	T	T	55035787	1	4	53	0	1	0	0	0	0	0	0	0	16648	1392	48	3		3	TRIM48	11	55035787	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	9107421	55035787	79970729	355	56408											
OR5B17	219965	broad.mit.edu	37	chr11	58126571	58126571	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttagaatcacaagatactCtgtagcaaggagagataaaa	8	5	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58126571	G	G	58126571	1	3	53	0	1	0	0	0	0	0	0	0	11243	928	32	4		4	OR5B17	11	58126571	5'Flank	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3090784	58126571	76879945	356	56409											
VWCE	220001	broad.mit.edu	37	chr11	61026770	61026770	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagcccctgcttttcttccaGaggagacagggaatctagag	12	10	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61026770	A	A	61026770	2	1	53	1	0	0	0	0	0	0	0	1	17372	933	33	4		4	VWCE	11	61026770	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2900199	61026770	73979746	357	56410											
SUV420H1	51111	broad.mit.edu	37	chr11	67925067	67925067	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagggacaatagaagtgcTgccactaaactttcagttga	10	7	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67925067	C	C	67925067	1	2	53	0	1	0	0	0	0	0	0	0	15532	1595	55	5		5	SUV420H1	11	67925067	3'UTR	SNP	T	TCGA-17-Z021-01A-01W-0746-08	6898297	67925067	67081449	358	56411											
SHANK2	22941	broad.mit.edu	37	chr11	70670212	70670212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctcctgagggcagaggaGgtgctggcagagctcatggg	19	8	1	3	rs138407245	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70670212	A	A	70670212	1	1	53	0	1	0	0	0	0	0	0	0	14378	1015	35	4		4	SHANK2	11	70670212	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2745145	70670212	64336304	359	56412											
SHANK2	22941	broad.mit.edu	37	chr11	70803432	70803432	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaggggaagtcagttcGtgggtacaacagagtggaga	18	4	1	3	rs78330727	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70803432	A	A	70803432	1	1	53	0	1	0	0	0	0	0	0	0	14378	1160	40	4		4	SHANK2	11	70803432	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	133220	70803432	64203084	360	56413											
RAB6A	5870	broad.mit.edu	37	chr11	73388763	73388763	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atataaataatgaagacactGacttttgttgtgcttgtgaa	8	4	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73388763	A	A	73388763	1	1	53	0	1	0	0	0	0	0	0	0	13059	1305	45	4		4	RAB6A	11	73388763	3'UTR	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2585331	73388763	61617753	361	56414											
C2CD3	26005	broad.mit.edu	37	chr11	73844655	73844655	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaatgcagcagaaacatTtggaatattcagtgcatttc	7	8	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73844655	A	A	73844655	1	1	53	0	1	0	0	0	0	0	0	0	2176	1856	64	5		5	C2CD3	11	73844655	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	455892	73844655	61161861	362	56415											
PRCP	5547	broad.mit.edu	37	chr11	82564320	82564320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacatcccacatgaaccCctaagaagagtttacaaaat	5	12	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82564320	A	A	82564320	3	1	53	1	0	0	0	0	1	0	0	0	12555	637	22	2	1208	2	PRCP	11	82564320	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	8719665	82564320	52442196	363	56416											
RAB30	27314	broad.mit.edu	37	chr11	82750819	82750819	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctcaaagaaaagatgagTaagacttccacaggaagcag	11	7	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82750819	G	G	82750819	1	3	53	0	1	0	0	0	0	0	0	0	13027	1653	57	5		5	RAB30	11	82750819	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	186499	82750819	52255697	364	56417											
SYTL2	54843	broad.mit.edu	37	chr11	85409015	85409015	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagacagagtcatcaataCtattaccatttaacaaaaga	5	8	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85409015	A	A	85409015	1	1	53	0	1	0	0	0	0	0	0	0	15602	580	20	3		3	SYTL2	11	85409015	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2658196	85409015	49597501	365	56418											
PICALM	8301	broad.mit.edu	37	chr11	85685740	85685740	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattaccacagttacatgtaGtgtgtaatacctgtgctcct	7	10	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85685740	A	A	85685740	1	1	53	0	1	0	0	0	0	0	0	0	11975	1044	36	4		4	PICALM	11	85685740	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	276725	85685740	49320776	366	56419											
RAB38	23682	broad.mit.edu	37	chr11	87882916	87882916	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatcttgaggccattgttcAtgagcacatccttcccctgg	8	14	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87882916	T	T	87882916	3	4	53	1	0	0	0	0	1	0	0	0	13036	217	8	5	233	5	RAB38	11	87882916	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2197176	87882916	47123600	367	56420											
GRM5	2915	broad.mit.edu	37	chr11	88695982	88695982	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caataaaaacttaccatcccAgcacggtagttcacgcctga	6	13	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88695982	T	T	88695982	1	4	53	0	1	0	0	0	0	0	0	0	6866	203	7	5		5	GRM5	11	88695982	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	813066	88695982	46310534	368	56421											
PIWIL4	143689	broad.mit.edu	37	chr11	94316459	94316459	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatacagagaaaaaaagccCtctgaacataatgtgatgat	8	6	1	5			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94316459	T	T	94316459	1	4	53	0	1	0	0	0	0	0	0	0	12055	696	24	4		4	PIWIL4	11	94316459	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5620477	94316459	40690057	369	56422											
CNTN5	53942	broad.mit.edu	37	chr11	99827596	99827596	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggcggaagacagccgGcggttcatctcccaggagac	14	11	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99827596	T	T	99827596	2	4	53	1	0	0	0	0	0	0	0	1	3676	1190	42	3		3	CNTN5	11	99827596	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5511137	99827596	35178920	370	56423											
MMP1	4312	broad.mit.edu	37	chr11	102667963	102667963	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcatgggaaatagctctctCactctggccctcagtctgcc	9	14	6	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102667963	T	T	102667963	1	4	53	0	1	0	0	0	0	0	0	0	9741	841	29	4		4	MMP1	11	102667963	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2840367	102667963	32338553	371	56424											
EXPH5	23086	broad.mit.edu	37	chr11	108398907	108398907	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaggtcctgcatggccatCacatctgtggaaataatttg	11	8	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108398907	T	T	108398907	3	4	53	1	0	0	0	0	1	0	0	0	5365	826	29	4	5533	4	EXPH5	11	108398907	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5730944	108398907	26607609	372	56425											
SIAE	54414	broad.mit.edu	37	chr11	124535206	124535206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaatcatttcactttaaGttaataaaaattgagatttt	3	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124535206	T	T	124535206	1	4	53	0	1	0	0	0	0	0	0	0	14411	1044	36	3		3	SIAE	11	124535206	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	16136299	124535206	10471310	373	56426											
SNX19	399979	broad.mit.edu	37	chr11	130780051	130780051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcaaaagtaaaacacaCacacattttaaagagaaatt	5	7	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130780051	A	A	130780051	1	1	53	0	1	0	0	0	0	0	0	0	15004	493	17	3		3	SNX19	11	130780051	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	6244845	130780051	4226465	374	56427											
NTM	50863	broad.mit.edu	37	chr11	131781542	131781542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggagagcgccaccctcaGgtagggagctgacattgttc	16	10	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131781542	T	T	131781542	3	4	53	1	0	0	0	0	1	0	0	0	10794	1014	35	2	255	2	NTM	11	131781542	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1001491	131781542	3224974	375	56428											
NTM	50863	broad.mit.edu	37	chr11	131926689	131926690	+	Intron	DNP	CC	TT	TT													cttacacccacagagatgatCctcaacctttgtatgttcaa							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	131926690	TT	TT	131926689	1	4	53	0	1	0	0	0	0	0	0	0	10794	870	30	4		4	NTM	11	131926689	Intron	DNP	CC	TCGA-17-Z021-01A-01W-0746-08	145147	131926689	3079827	376	56429											
OPCML	4978	broad.mit.edu	37	chr11	133057854	133057854	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacagttccaagtcgtttcActcctggtgcgtgatgctgt	10	11	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133057854	T	T	133057854	1	4	53	0	1	0	0	0	0	0	0	0	10968	174	6	5		5	OPCML	11	133057854	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1131165	133057854	1948662	377	56430											
DYRK4	8798	broad.mit.edu	37	chr12	4705493	4705493	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccacagaggagggactgcGtgactgtggcccctgcagaa	16	11	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4705493	A	A	4705493	1	1	53	0	1	0	0	0	0	0	0	0	4898	1160	40	4		4	DYRK4	12	4705493	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		4705493	129146402	378	56431											
ANO2	57101	broad.mit.edu	37	chr12	5698896	5698896	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtaaggagcaggtgacaCgagaggtggctttggatgca	18	5	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5698896	T	T	5698896	1	4	53	0	1	0	0	0	0	0	0	0	697	551	19	4		4	ANO2	12	5698896	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	993403	5698896	128152999	379	56432											
TAS2R42	353164	broad.mit.edu	37	chr12	11338720	11338720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagtggcacgagggaaagGcatttaaggctaacatgaca	13	6	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11338720	T	T	11338720	3	4	53	1	0	0	0	0	1	0	0	0	15699	1203	42	3	124	3	TAS2R42	12	11338720	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5639824	11338720	122513175	380	56433											
SOX5	6660	broad.mit.edu	37	chr12	24017225	24017225	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctactcgggcgtccctatTatctgagacacaatattgaa	7	11	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24017225	A	A	24017225	1	1	53	0	1	0	0	0	0	0	0	0	15068	1769	61	5		5	SOX5	12	24017225	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	12678505	24017225	109834670	381	56434											
SOX5	6660	broad.mit.edu	37	chr12	24565124	24565124	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgtgttttttctgttttTactctgttagtcttactaga	6	6	3	1	rs78786738	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24565124	C	C	24565124	1	2	53	0	1	0	0	0	0	0	0	0	15068	1769	61	5		5	SOX5	12	24565124	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	547899	24565124	109286771	382	56435											
ITPR2	3709	broad.mit.edu	37	chr12	26492257	26492257	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataggcactgttcactccccTccatctcagttctttattca	4	14	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26492257	A	A	26492257	1	1	53	0	1	0	0	0	0	0	0	0	7991	1566	54	5		5	ITPR2	12	26492257	3'UTR	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1927133	26492257	107359638	383	56436											
IPO8	10526	broad.mit.edu	37	chr12	30848603	30848603	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccgggtgggggctccgcGgcccccggaacagtaggccg	17	16	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30848603	A	A	30848603	1	1	53	0	1	0	0	0	0	0	0	0	7868	1131	39	4		4	IPO8	12	30848603	5'UTR	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4356346	30848603	103003292	384	56437											
SYT10	341359	broad.mit.edu	37	chr12	33545234	33545234	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacagcacatgcagtctactGactctagatggcaaatggga	11	9	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33545234	T	T	33545234	1	4	53	0	1	0	0	0	0	0	0	0	15585	1305	45	3		3	SYT10	12	33545234	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2696631	33545234	100306661	385	56438											
SLC2A13	114134	broad.mit.edu	37	chr12	40458331	40458331	+	Intron	DEL	T	-	-													actcccacagtgcaaggaaaTtctttttaaaatcaagggaa					rs35540200		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40458331	-	-	40458331	6	5	53	0	1	1	0	1	0	0	0	0	14656	1508	52	0		0	SLC2A13	12	40458331	Intron	DEL	T	TCGA-17-Z021-01A-01W-0746-08	6913097	40458331	93393564	386	56439											
CNTN1	1272	broad.mit.edu	37	chr12	41436291	41436291	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgttgactttctgtctcGttgatctgtctaatgttgac	8	9	4	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41436291	A	A	41436291	1	1	53	0	1	0	0	0	0	0	0	0	3672	1160	40	4		4	CNTN1	12	41436291	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	977960	41436291	92415604	387	56440											
ADAMTS20	80070	broad.mit.edu	37	chr12	43945021	43945021	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacacttctccaaactcattGacccgctcggggatcactac	6	15	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43945021	T	T	43945021	2	4	53	1	0	0	0	0	0	0	0	1	266	1277	45	3		3	ADAMTS20	12	43945021	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2508730	43945021	89906874	388	56441											
VDR	7421	broad.mit.edu	37	chr12	48238661	48238661	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcaggtcggctagcttctgGatcatcttggcatagagcag	13	10	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48238661	A	A	48238661	2	1	53	1	0	0	0	0	0	0	0	1	17276	1164	41	4		4	VDR	12	48238661	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4293640	48238661	85613234	389	56442											
LETMD1	25875	broad.mit.edu	37	chr12	51442961	51442961	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgtcctgtacacaatcttCatgaaaggtaaaaacgaaac	6	8	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51442961	A	A	51442961	3	1	53	1	0	0	0	0	1	0	0	0	8808	825	29	3	273	3	LETMD1	12	51442961	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3204300	51442961	82408934	390	56443											
SCN8A	6334	broad.mit.edu	37	chr12	52184304	52184304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtaagtgcattgtgcagGctgaggccttggtgagaacc	15	7	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52184304	T	T	52184304	1	4	53	0	1	0	0	0	0	0	0	0	14037	1218	42	3		3	SCN8A	12	52184304	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	741343	52184304	81667591	391	56444											
THAP2	83591	broad.mit.edu	37	chr12	72068146	72068146	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggatgctgttccaaccAtttttgatttttgtacccat	6	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72068146	G	G	72068146	3	3	53	1	0	0	0	0	1	0	0	0	15967	217	8	5	241	5	THAP2	12	72068146	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	19883842	72068146	61783749	392	56445											
TBC1D15	64786	broad.mit.edu	37	chr12	72312367	72312367	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcaaatgtgatatttattAtgaaaagaaacaatttattc	5	3	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72312367	G	G	72312367	1	3	53	0	1	0	0	0	0	0	0	0	15723	464	16	5		5	TBC1D15	12	72312367	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	244221	72312367	61539528	393	56446											
OSBPL8	114882	broad.mit.edu	37	chr12	76904574	76904574	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggctgaggcaggagaaTcgcttgaccccgggagctgg	18	9	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76904574	C	C	76904574	1	2	53	0	1	0	0	0	0	0	0	0	11377	1450	50	5		5	OSBPL8	12	76904574	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	4592207	76904574	56947321	394	56447											
NR1H4	9971	broad.mit.edu	37	chr12	100928838	100928838	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtctgccaagactggcagGaactgagtttctaggtacat	12	8	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100928838	A	A	100928838	1	1	53	0	1	0	0	0	0	0	0	0	10714	1189	41	4		4	NR1H4	12	100928838	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	24024264	100928838	32923057	395	56448											
GAS2L3	283431	broad.mit.edu	37	chr12	101018250	101018250	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccagcacagaaacttaaatCggccttgaatttaaatcagc	6	11	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101018250	T	T	101018250	3	4	53	1	0	0	0	0	1	0	0	0	6310	893	31	4	1697	4	GAS2L3	12	101018250	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	89412	101018250	32833645	396	56449											
ANO4	121601	broad.mit.edu	37	chr12	101352869	101352869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgttttctctgcaccCtcatccctctcaacccccct	2	21	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101352869	A	A	101352869	1	1	53	0	1	0	0	0	0	0	0	0	699	696	24	2		2	ANO4	12	101352869	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	334619	101352869	32499026	397	56450											
C12orf51	283450	broad.mit.edu	37	chr12	112740211	112740211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgagtaactgtttggcaGttcagggcctgggtgaactg	15	6	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112740211	A	A	112740211	1	1	53	0	1	0	0	0	0	0	0	0	1709	1044	36	4		4	C12orf51	12	112740211	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11387342	112740211	21111684	398	56451											
CIT	11113	broad.mit.edu	37	chr12	120214777	120214777	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactggcaaagaaaagacctGgccaggtgcagtggctcacg	14	10	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120214777	A	A	120214777	1	1	53	0	1	0	0	0	0	0	0	0	3469	1363	47	4		4	CIT	12	120214777	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7474566	120214777	13637118	399	56452											
DNAH10	196385	broad.mit.edu	37	chr12	124382375	124382375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgaagcatgttgtcttGgttcaccaatccgtggacca	12	9	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124382375	T	T	124382375	3	4	53	1	0	0	0	0	1	0	0	0	4638	1339	47	2	9199	2	DNAH10	12	124382375	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4167598	124382375	9469520	400	56453											
EP400	57634	broad.mit.edu	37	chr12	132522304	132522304	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatccgagaagtggctgctcAgggaaatgactactccatgg	13	9	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132522304	T	T	132522304	3	4	53	1	0	0	0	0	1	0	0	0	5191	188	7	5	6144	5	EP400	12	132522304	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	8139929	132522304	1329591	401	56454											
STARD13	90627	broad.mit.edu	37	chr13	33687050	33687050	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcctgcacggcctgcagcCgctgctctttggagacatct	11	15	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33687050	G	G	33687050	3	3	53	1	0	0	0	0	1	0	0	0	15374	652	23	4	1065	4	STARD13	13	33687050	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08		33687050	81482828	402	56455											
NBEA	26960	broad.mit.edu	37	chr13	36188729	36188729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtagctctgatagggaGtgactttagcctctacctca	9	9	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36188729	T	T	36188729	1	4	53	0	1	0	0	0	0	0	0	0	10281	1044	36	3		3	NBEA	13	36188729	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2501679	36188729	78981149	403	56456											
SERP2	387923	broad.mit.edu	37	chr13	44953886	44953886	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaacttatatcccatgttctCcactggcctttgaaaaacac	5	12	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44953886	A	A	44953886	1	1	53	0	1	0	0	0	0	0	0	0	14198	870	30	3		3	SERP2	13	44953886	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	8765157	44953886	70215992	404	56457											
PCDH9	5101	broad.mit.edu	37	chr13	67296795	67296795	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggacaaagacaagcagaaAagaaaaaaattaaacaccta	7	6	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67296795	G	G	67296795	1	3	53	0	1	0	0	0	0	0	0	0	11612	29	1	5		5	PCDH9	13	67296795	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	22342909	67296795	47873083	405	56458											
MYCBP2	23077	broad.mit.edu	37	chr13	77661808	77661808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagttcaagaataaaataCatgagtttaaaaagtactca	6	4	2	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77661808	A	A	77661808	1	1	53	0	1	0	0	0	0	0	0	0	10112	493	17	3		3	MYCBP2	13	77661808	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	10365013	77661808	37508070	406	56459											
SLC15A1	6564	broad.mit.edu	37	chr13	99336994	99336994	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accttcacatctgtttctgtGaattggcccctgacatgaaa	7	11	3	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99336994	C	C	99336994	4	2	53	1	0	0	0	0	0	1	0	0	14511	1294	45	4	19	4	SLC15A1	13	99336994	Nonsense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	21675186	99336994	15832884	407	56460											
FGF14	2259	broad.mit.edu	37	chr13	102915437	102915437	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtctccttttggagtttCacctgactttattaccagtt	6	9	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102915437	A	A	102915437	1	1	53	0	1	0	0	0	0	0	0	0	5900	841	29	3		3	FGF14	13	102915437	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3578443	102915437	12254441	408	56461											
ARHGEF7	8874	broad.mit.edu	37	chr13	111898474	111898474	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttacatcagacattaaagGatatttgttaatttcctgcc	6	7	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111898474	T	T	111898474	1	4	53	0	1	0	0	0	0	0	0	0	913	1189	41	3		3	ARHGEF7	13	111898474	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	8983037	111898474	3271404	409	56462											
POTEG	404785	broad.mit.edu	37	chr14	19559036	19559036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgttaatgttgctggaaCatggcactgatccgaatatt	11	7	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19559036	A	A	19559036	3	1	53	1	0	0	0	0	1	0	0	0	12362	478	17	3	692	3	POTEG	14	19559036	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08		19559036	87790504	410	56463											
TEP1	7011	broad.mit.edu	37	chr14	20837598	20837598	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agattccctgcaggtagatgGgtctgtccctggagtttggg	15	8	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20837598	C	C	20837598	3	2	53	1	0	0	0	0	1	0	0	0	15881	1232	43	4	334	4	TEP1	14	20837598	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1278562	20837598	86511942	411	56464											
LRRC16B	90668	broad.mit.edu	37	chr14	24538410	24538410	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacacggcgggcacagtcCtgtgacaagctggaacctga	14	11	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24538410	T	T	24538410	2	4	53	1	0	0	0	0	0	0	0	1	9059	668	24	4		4	LRRC16B	14	24538410	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3700812	24538410	82811130	412	56465											
PSME2	5721	broad.mit.edu	37	chr14	24614789	24614789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacctaggctcatgcctcaCgccatcctaatgttcctaat	5	15	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24614789	A	A	24614789	1	1	53	0	1	0	0	0	0	0	0	0	12813	551	19	3		3	PSME2	14	24614789	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	76379	24614789	82734751	413	56466											
CTSG	1511	broad.mit.edu	37	chr14	25043762	25043762	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccagccaaggctcgggGgtcgctggtgcagtacacat	14	13	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25043762	T	T	25043762	1	4	53	0	1	0	0	0	0	0	0	0	4069	1247	43	2		2	CTSG	14	25043762	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	428973	25043762	82305778	414	56467											
ARHGAP5	394	broad.mit.edu	37	chr14	32582785	32582785	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taactttatggaccttgggaCgtatttactggcataagcca	9	8	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32582785	T	T	32582785	1	4	53	0	1	0	0	0	0	0	0	0	888	551	19	4		4	ARHGAP5	14	32582785	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	7539023	32582785	74766755	415	56468											
C14orf28	122525	broad.mit.edu	37	chr14	45369771	45369771	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgcaaagcagtatcctgtAcaccactctatgttgaaata	7	11	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45369771	T	T	45369771	3	4	53	1	0	0	0	0	1	0	0	0	1783	391	14	5	135	5	C14orf28	14	45369771	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	12786986	45369771	61979769	416	56469											
FRMD6	122786	broad.mit.edu	37	chr14	51960187	51960188	+	Intron	DNP	TA	AT	AT													cacgagatctgatggttttaTaaaggggagttcccctgcac							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	51960188	AT	AT	51960187	1	1	53	0	1	0	0	0	0	0	0	0	6114	1421	49	5		5	FRMD6	14	51960187	Intron	DNP	TA	TCGA-17-Z021-01A-01W-0746-08	6590416	51960187	55389353	417	56470											
FRMD6	122786	broad.mit.edu	37	chr14	52194798	52194798	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactgtttgctagaggatgCgaaagtcataagttctttac	9	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52194798	T	T	52194798	1	4	53	0	1	0	0	0	0	0	0	0	6114	783	27	4		4	FRMD6	14	52194798	3'UTR	SNP	C	TCGA-17-Z021-01A-01W-0746-08	234611	52194798	55154742	418	56471											
NID2	22795	broad.mit.edu	37	chr14	52486794	52486794	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taccaggtatgcactgaaatCcatccccataatatccgggt	7	12	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52486794	G	G	52486794	3	3	53	1	0	0	0	0	1	0	0	0	10510	855	30	4	1390	4	NID2	14	52486794	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	291996	52486794	54862746	419	56472											
SAMD4A	23034	broad.mit.edu	37	chr14	55231118	55231118	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaaatgagagtcaggtcCcagagattagaaaggggtgc	16	5	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55231118	T	T	55231118	1	4	53	0	1	0	0	0	0	0	0	0	13932	638	22	4		4	SAMD4A	14	55231118	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2744324	55231118	52118422	420	56473											
SMOC1	64093	broad.mit.edu	37	chr14	70490074	70490074	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagccaagcccaagaaatgtGcccggcgtttcaccgactac	9	14	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70490074	C	C	70490074	3	2	53	1	0	0	0	0	1	0	0	0	14915	1319	46	4	1243	4	SMOC1	14	70490074	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	15258956	70490074	36859466	421	56474											
HEATR4	399671	broad.mit.edu	37	chr14	73985886	73985886	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctgtgaacagacaaagaaAcaatgagtcccctataacct	6	10	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73985886	T	T	73985886	1	4	53	0	1	0	0	0	0	0	0	0	7097	58	2	5		5	HEATR4	14	73985886	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3495812	73985886	33363654	422	56475											
ESRRB	2103	broad.mit.edu	37	chr14	76905572	76905572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccaccgttgttttatcGcaccaaagccttagcataga	6	12	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76905572	T	T	76905572	1	4	53	0	1	0	0	0	0	0	0	0	5303	1102	38	3		3	ESRRB	14	76905572	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2919686	76905572	30443968	423	56476											
NGB	58157	broad.mit.edu	37	chr14	77732642	77732642	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaaggtaaaaagaaacGcaagaaagaggctactgggg	12	5	0	3	rs116897063	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77732642	C	C	77732642	1	2	53	0	1	0	0	0	0	0	0	0	10487	1102	38	4		4	NGB	14	77732642	3'UTR	SNP	G	TCGA-17-Z021-01A-01W-0746-08	827070	77732642	29616898	424	56477											
NRXN3	9369	broad.mit.edu	37	chr14	80164064	80164064	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaggccaactctctgggctCtattatgatggtttgaaagt	10	8	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80164064	G	G	80164064	2	3	53	1	0	0	0	0	0	0	0	1	10762	900	32	4		4	NRXN3	14	80164064	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2431422	80164064	27185476	425	56478											
NRXN3	9369	broad.mit.edu	37	chr14	80176219	80176219	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattattattattatcattAttagttccttactaccctat	1	8	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80176219	G	G	80176219	1	3	53	0	1	0	0	0	0	0	0	0	10762	464	16	5		5	NRXN3	14	80176219	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	12155	80176219	27173321	426	56479											
C14orf145	145508	broad.mit.edu	37	chr14	81259233	81259233	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttcaggtcttccctcctCttctccgcctcctctttcag	5	17	6	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81259233	T	T	81259233	2	4	53	1	0	0	0	0	0	0	0	1	1762	912	32	4		4	C14orf145	14	81259233	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1083014	81259233	26090307	427	56480											
SERPINA4	5267	broad.mit.edu	37	chr14	95029772	95029772	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaggtgttcttctgggggAatttcctgggcattctcttc	12	10	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95029772	T	T	95029772	1	4	53	0	1	0	0	0	0	0	0	0	14204	261	9	5		5	SERPINA4	14	95029772	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	13770539	95029772	12319768	428	56481											
TCL1A	8115	broad.mit.edu	37	chr14	96178830	96178830	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctgccagccatccacCcatctgggcaggggtccgag	11	18	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96178830	G	G	96178830	1	3	53	0	1	0	0	0	0	0	0	0	15826	638	22	4		4	TCL1A	14	96178830	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1149058	96178830	11170710	429	56482											
EML1	2009	broad.mit.edu	37	chr14	100380643	100380643	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcacacccattactcaggTacgatcccactcagcaggcc	6	17	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100380643	C	C	100380643	5	2	53	1	0	0	0	0	0	0	1	0	5138	1652	57	5	1737	5	EML1	14	100380643	Splice_Site	SNP	T	TCGA-17-Z021-01A-01W-0746-08	4201813	100380643	6968897	430	56483											
RYR3	6263	broad.mit.edu	37	chr15	33962577	33962577	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtgacactatgatggtttCatgcactgctttggattttc	9	7	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33962577	A	A	33962577	1	1	53	0	1	0	0	0	0	0	0	0	13881	841	29	3		3	RYR3	15	33962577	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08		33962577	68568815	431	56484											
RYR3	6263	broad.mit.edu	37	chr15	33988396	33988396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgacagccacagtcctGctccctcctgttgtccttcc	7	18	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33988396	T	T	33988396	1	4	53	0	1	0	0	0	0	0	0	0	13881	1334	46	3		3	RYR3	15	33988396	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	25819	33988396	68542996	432	56485											
PIF1	80119	broad.mit.edu	37	chr15	65110438	65110438	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccccgtagcaggactgccaCctcctcccaacacttacctc	6	20	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65110438	G	G	65110438	1	3	53	0	1	0	0	0	0	0	0	0	11978	522	18	4		4	PIF1	15	65110438	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	31122042	65110438	37420954	433	56486											
MYO9A	4649	broad.mit.edu	37	chr15	72193500	72193500	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaggccaaataaactagtCaatctcatgcaaagaatcct	5	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72193500	T	T	72193500	1	4	53	0	1	0	0	0	0	0	0	0	10178	841	29	4		4	MYO9A	15	72193500	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	7083062	72193500	30337892	434	56487											
STRA6	64220	broad.mit.edu	37	chr15	74477424	74477424	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagagaatgagcaaagtgaGaggtcagggtctggagagtc	17	5	2	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74477424	A	A	74477424	1	1	53	0	1	0	0	0	0	0	0	0	15440	957	33	4		4	STRA6	15	74477424	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2283924	74477424	28053968	435	56488											
NRG4	145957	broad.mit.edu	37	chr15	76243174	76243174	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattggattgactttttattAttgatttgaaagagttcttt	7	2	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76243174	G	G	76243174	1	3	53	0	1	0	0	0	0	0	0	0	10745	464	16	5		5	NRG4	15	76243174	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1765750	76243174	26288218	436	56489											
KIAA1024	23251	broad.mit.edu	37	chr15	79749995	79749995	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagtacagtgacaggcaCaccatgaagcactcagacga	11	11	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79749995	T	T	79749995	2	4	53	1	0	0	0	0	0	0	0	1	8275	477	17	4		4	KIAA1024	15	79749995	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3506821	79749995	22781397	437	56490											
MTHFS	10588	broad.mit.edu	37	chr15	80167000	80167000	+	Intron	DEL	A	-	-													gtgctaacaagaggctgaccAaaaaacttaaaaggaaaaac					rs71453468		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80167000	-	-	80167000	6	5	53	0	1	1	0	1	0	0	0	0	10026	145	5	0		0	MTHFS	15	80167000	Intron	DEL	A	TCGA-17-Z021-01A-01W-0746-08	417005	80167000	22364392	438	56491											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84539716	84539716	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatttcatcttcaaggtagGatgatcctcttcataaactt	6	8	5	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84539716	T	T	84539716	1	4	53	0	1	0	0	0	0	0	0	0	276	1189	41	3		3	ADAMTSL3	15	84539716	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4372716	84539716	17991676	439	56492											
AGBL1	123624	broad.mit.edu	37	chr15	87065972	87065972	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtttaattgtttatcttgTggagctttattttctcaagt	7	4	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87065972	C	C	87065972	1	2	53	0	1	0	0	0	0	0	0	0	375	1711	59	5		5	AGBL1	15	87065972	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	2526256	87065972	15465420	440	56493											
ACSM2A	123876	broad.mit.edu	37	chr16	20482505	20482505	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggcagaacattcctactCgagcctgggcctcaaggcca	11	13	1	1	rs142316126		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20482505	A	A	20482505	4	1	53	1	0	0	0	0	0	1	0	0	183	893	31	3	721	3	ACSM2A	16	20482505	Nonsense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08		20482505	69872248	441	56494											
HS3ST2	9956	broad.mit.edu	37	chr16	22844854	22844854	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaaccatggtgtggtagaGgggaggcacaccggaccttt	14	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22844854	A	A	22844854	1	1	53	0	1	0	0	0	0	0	0	0	7431	1015	35	4		4	HS3ST2	16	22844854	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2362349	22844854	67509899	442	56495											
ITGAM	3684	broad.mit.edu	37	chr16	31309111	31309111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctacggggagcagggcCaaccctggggccgctttggg	16	12	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31309111	A	A	31309111	3	1	53	1	0	0	0	0	1	0	0	0	7957	595	21	2	1600	2	ITGAM	16	31309111	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	8464257	31309111	59045642	443	56496											
N4BP1	9683	broad.mit.edu	37	chr16	48634240	48634240	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtggaccaaagcattccgGaaagcaggtggcaaagagct	14	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48634240	A	A	48634240	1	1	53	0	1	0	0	0	0	0	0	0	10203	1189	41	4		4	N4BP1	16	48634240	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	17325129	48634240	41720513	444	56497											
CNOT1	23019	broad.mit.edu	37	chr16	58572121	58572121	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgattgcgaattagcagctCcacagcctccacattatatt	6	11	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58572121	G	G	58572121	3	3	53	1	0	0	0	0	1	0	0	0	3649	864	30	4	1997	4	CNOT1	16	58572121	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	9937881	58572121	31782632	445	56498											
CDH8	1006	broad.mit.edu	37	chr16	61760956	61760956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtcaaatatgagacagttGtatacaaacatattcagcat	6	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61760956	T	T	61760956	1	4	53	0	1	0	0	0	0	0	0	0	3146	1392	48	3		3	CDH8	16	61760956	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3188835	61760956	28593797	446	56499											
CDH8	1006	broad.mit.edu	37	chr16	61854758	61854758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgccaggaactccacaCaagtccctcaactttaaaac	4	14	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61854758	A	A	61854758	1	1	53	0	1	0	0	0	0	0	0	0	3146	493	17	3		3	CDH8	16	61854758	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	93802	61854758	28499995	447	56500											
C16orf70	80262	broad.mit.edu	37	chr16	67168097	67168097	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcccatggcctggcttcTctccagataccccatggagc	9	15	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67168097	C	C	67168097	2	2	53	1	0	0	0	0	0	0	0	1	1843	1538	54	5		5	C16orf70	16	67168097	Silent	SNP	T	TCGA-17-Z021-01A-01W-0746-08	5313339	67168097	23186656	448	56501											
FTSJD1	55783	broad.mit.edu	37	chr16	71318874	71318874	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccccttatagtggaggCaaaccacatagacttcggag	9	12	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71318874	T	T	71318874	3	4	53	1	0	0	0	0	1	0	0	0	6150	710	25	4	1366	4	FTSJD1	16	71318874	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4150777	71318874	19035879	449	56502											
CLEC18B	497190	broad.mit.edu	37	chr16	74445432	74445432	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatgagccttggagtccaCgacccctgctttatgctgat	9	12	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74445432	T	T	74445432	1	4	53	0	1	0	0	0	0	0	0	0	3535	551	19	4		4	CLEC18B	16	74445432	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3126558	74445432	15909321	450	56503											
PKD1L2	114780	broad.mit.edu	37	chr16	81157418	81157418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagtggcattgggtcattGctatcctgcaggggctccat	13	9	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81157418	T	T	81157418	1	4	53	0	1	0	0	0	0	0	0	0	12060	1334	46	3		3	PKD1L2	16	81157418	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6711986	81157418	9197335	451	56504											
NECAB2	54550	broad.mit.edu	37	chr16	84035364	84035364	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggctagagctaggattaAcaggggagccacacgcggag	16	8	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84035364	T	T	84035364	1	4	53	0	1	0	0	0	0	0	0	0	10400	58	2	5		5	NECAB2	16	84035364	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2877946	84035364	6319389	452	56505											
ACSF3	197322	broad.mit.edu	37	chr16	89212437	89212437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacactcactgtcccacagGgagctcaaagagtgggccag	13	12	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89212437	T	T	89212437	3	4	53	1	0	0	0	0	1	0	0	0	176	1223	43	2	1623	2	ACSF3	16	89212437	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	5177073	89212437	1142316	453	56506											
TP53	7157	broad.mit.edu	37	chr17	7578555	7578556	+	Splice_Site	DNP	CT	AA	AA													ttgttgagggcaggggagtaCtgtaggaagaggaaggagac							TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7578556	AA	AA	7578555	5	1	53	1	0	0	0	0	0	0	1	0	16505	579	20	3	923	3	TP53	17	7578555	Splice_Site	DNP	CT	TCGA-17-Z021-01A-01W-0746-08		7578555	73616655	454	56507											
MYH10	4628	broad.mit.edu	37	chr17	8526461	8526461	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctgatggaatccacactAgctttttagctgtccaatca	7	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8526461	G	G	8526461	3	3	53	1	0	0	0	0	1	0	0	0	10124	420	15	5	5986	5	MYH10	17	8526461	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	947906	8526461	72668749	455	56508											
MYH1	4619	broad.mit.edu	37	chr17	10400674	10400674	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctcataagcattcttaatCttaaatagttctgtgctgag	6	8	4	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10400674	G	G	10400674	3	3	53	1	0	0	0	0	1	0	0	0	10123	912	32	4	1394	4	MYH1	17	10400674	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1874213	10400674	70794536	456	56509											
MYH1	4619	broad.mit.edu	37	chr17	10416884	10416884	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcaggagctgcaaagtGttcctccaaaccaatatttg	8	10	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10416884	C	C	10416884	1	2	53	0	1	0	0	0	0	0	0	0	10123	1392	48	4		4	MYH1	17	10416884	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	16210	10416884	70778326	457	56510											
DNAH9	1770	broad.mit.edu	37	chr17	11696813	11696813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttttttgtgtctgttcccCttgaagggcattctcttctc	7	10	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11696813	T	T	11696813	1	4	53	0	1	0	0	0	0	0	0	0	4648	696	24	4		4	DNAH9	17	11696813	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1279929	11696813	69498397	458	56511											
MAP2K3	5606	broad.mit.edu	37	chr17	21214934	21214934	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacagctgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	19	2	0	1	rs36218908		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21214934	C	C	21214934	1	2	53	0	1	0	0	0	0	0	0	0	9330	1392	48	4		4	MAP2K3	17	21214934	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	9518121	21214934	59980276	459	56512											
TMEM132E	124842	broad.mit.edu	37	chr17	32956216	32956216	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcaagccatcctgccccTggccatggtgagcaggcagg	14	13	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32956216	A	A	32956216	3	1	53	1	0	0	0	0	1	0	0	0	16171	1580	55	5	1079	5	TMEM132E	17	32956216	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	11741282	32956216	48238994	460	56513											
CCL5	6352	broad.mit.edu	37	chr17	34199360	34199360	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggcaaatttgtgtaagttCaggttcaaggactctccatc	9	9	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34199360	G	G	34199360	1	3	53	0	1	0	0	0	0	0	0	0	2935	841	29	4		4	CCL5	17	34199360	3'UTR	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1243144	34199360	46995850	461	56514											
DDX52	11056	broad.mit.edu	37	chr17	35984347	35984347	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccactagtaatataagacTtggcaaactttaccaaaatt	4	9	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35984347	A	A	35984347	1	1	53	0	1	0	0	0	0	0	0	0	4403	1624	56	5		5	DDX52	17	35984347	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	1784987	35984347	45210863	462	56515											
HNF1B	6928	broad.mit.edu	37	chr17	36059379	36059379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaattccaagtcacataaCcaactcccgaaagcatgtgg	7	11	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36059379	A	A	36059379	1	1	53	0	1	0	0	0	0	0	0	0	7319	522	18	3		3	HNF1B	17	36059379	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	75032	36059379	45135831	463	56516											
KRT36	8689	broad.mit.edu	37	chr17	39644564	39644564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgagcctccaggtcagcCttgcacagggtcagctcatc	10	15	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39644564	A	A	39644564	3	1	53	1	0	0	0	0	1	0	0	0	8544	680	24	2	793	2	KRT36	17	39644564	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3585185	39644564	41550646	464	56517											
AOC2	314	broad.mit.edu	37	chr17	40997144	40997144	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctatcaccgtcgcccggtGctgagagctgagtttacaca	10	14	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40997144	T	T	40997144	2	4	53	1	0	0	0	0	0	0	0	1	729	1306	46	3		3	AOC2	17	40997144	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1352580	40997144	40198066	465	56518											
EFTUD2	9343	broad.mit.edu	37	chr17	42930009	42930009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatccagcatttgctgtccCccaaatgcattccagcccag	6	16	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42930009	A	A	42930009	1	1	53	0	1	0	0	0	0	0	0	0	5001	638	22	2		2	EFTUD2	17	42930009	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1932865	42930009	38265201	466	56519											
ARHGAP27	201176	broad.mit.edu	37	chr17	43473996	43473996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagcctgcgccccgtcCcggtcccgggtccccgcccc	11	24	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43473996	A	A	43473996	1	1	53	0	1	0	0	0	0	0	0	0	878	638	22	2		2	ARHGAP27	17	43473996	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	543987	43473996	37721214	467	56520											
TBX21	30009	broad.mit.edu	37	chr17	45821478	45821478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtgcttgctagcctcaCgtggggccagctgttggtgg	16	10	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45821478	A	A	45821478	1	1	53	0	1	0	0	0	0	0	0	0	15779	551	19	3		3	TBX21	17	45821478	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2347482	45821478	35373732	468	56521											
C17orf47	284083	broad.mit.edu	37	chr17	56621484	56621484	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggggatgtgttagtagTaacctcagaccctctctgtg	12	9	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56621484	G	G	56621484	3	3	53	1	0	0	0	0	1	0	0	0	1874	1638	57	5	1656	5	C17orf47	17	56621484	Missense_Mutation	SNP	T	TCGA-17-Z021-01A-01W-0746-08	10800006	56621484	24573726	469	56522											
CLTC	1213	broad.mit.edu	37	chr17	57758640	57758640	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatattgcatttaaaatattCttttttttcttaaaggaatc	3	4	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57758640	G	G	57758640	1	3	53	0	1	0	0	0	0	0	0	0	3598	928	32	4		4	CLTC	17	57758640	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1137156	57758640	23436570	470	56523											
CLTC	1213	broad.mit.edu	37	chr17	57759112	57759112	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaagcccagttgcagaaAggaatggtgaaagaagccat	12	7	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57759112	T	T	57759112	3	4	53	1	0	0	0	0	1	0	0	0	3598	69	3	5	3436	5	CLTC	17	57759112	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	472	57759112	23436098	471	56524											
CA4	762	broad.mit.edu	37	chr17	58236708	58236708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataaagtccggggccccgGgtcggccgctgccctgggcc	16	15	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58236708	T	T	58236708	3	4	53	1	0	0	0	0	1	0	0	0	2544	1232	43	2	892	2	CA4	17	58236708	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	477596	58236708	22958502	472	56525											
TLK2	11011	broad.mit.edu	37	chr17	60650587	60650587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctctaggcaacaggaaaGgataaattcacagagggaag	11	6	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60650587	T	T	60650587	3	4	53	1	0	0	0	0	1	0	0	0	16067	1000	35	2	1022	2	TLK2	17	60650587	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2413879	60650587	20544623	473	56526											
TANC2	26115	broad.mit.edu	37	chr17	61391823	61391823	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtgcccagcatcactacaGagtcagtgtttgttggccga	11	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61391823	T	T	61391823	4	4	53	1	0	0	0	0	0	1	0	0	15664	943	33	3	1042	3	TANC2	17	61391823	Nonsense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	741236	61391823	19803387	474	56527											
HELZ	9931	broad.mit.edu	37	chr17	65214798	65214798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggccctgtgaagtctgcCatggagtactggccaagaga	13	10	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65214798	A	A	65214798	3	1	53	1	0	0	0	0	1	0	0	0	7116	594	21	2	5825	2	HELZ	17	65214798	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3822975	65214798	15980412	475	56528											
ABCA8	10351	broad.mit.edu	37	chr17	66878079	66878079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacagcctttcctcttccCtgcatactccttgcgtagac	5	15	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66878079	A	A	66878079	3	1	53	1	0	0	0	0	1	0	0	0	38	681	24	2	1034	2	ABCA8	17	66878079	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1663281	66878079	14317131	476	56529											
ABCA8	10351	broad.mit.edu	37	chr17	66925424	66925424	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtttctctaacattattaCtagcataataaaatagatat	3	5	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66925424	T	T	66925424	1	4	53	0	1	0	0	0	0	0	0	0	38	580	20	4		4	ABCA8	17	66925424	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	47345	66925424	14269786	477	56530											
SLC39A11	201266	broad.mit.edu	37	chr17	71023484	71023484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccagcctcctcccaggCccagtaggctgcaccttcct	7	20	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71023484	A	A	71023484	1	1	53	0	1	0	0	0	0	0	0	0	14728	754	26	3		3	SLC39A11	17	71023484	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4098060	71023484	10171726	478	56531											
FOXJ1	2302	broad.mit.edu	37	chr17	74134191	74134191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcagagacaggttgtggCggattgaattctgggtgcag	16	5	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74134191	A	A	74134191	3	1	53	1	0	0	0	0	1	0	0	0	6071	768	27	3	760	3	FOXJ1	17	74134191	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	3110707	74134191	7061019	479	56532											
LAMA1	284217	broad.mit.edu	37	chr18	7055980	7055980	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccagctactcgagaagctGaggcaggagaatggcgtgaa	14	9	0	4	rs147657188	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7055980	A	A	7055980	1	1	53	0	1	0	0	0	0	0	0	0	8677	1305	45	4		4	LAMA1	18	7055980	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		7055980	71021268	480	56533											
DSG3	1830	broad.mit.edu	37	chr18	29038273	29038273	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catattcctagtatctatcaAggcaaaaagtaaatggcaca	6	8	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29038273	T	T	29038273	1	4	53	0	1	0	0	0	0	0	0	0	4818	87	3	5		5	DSG3	18	29038273	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	21982293	29038273	49038975	481	56534											
SLC14A2	8170	broad.mit.edu	37	chr18	43247994	43247994	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgagtcaggacaagtaagtCccagaggctcagggtccaaa	12	10	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43247994	A	A	43247994	1	1	53	0	1	0	0	0	0	0	0	0	14510	870	30	3		3	SLC14A2	18	43247994	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	14209721	43247994	34829254	482	56535											
MAPK4	5596	broad.mit.edu	37	chr18	48241649	48241649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtcgttccatagaaaggGgaactgagtgcaaaacactt	12	8	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48241649	A	A	48241649	1	1	53	0	1	0	0	0	0	0	0	0	9372	1247	43	4		4	MAPK4	18	48241649	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4993655	48241649	29835599	483	56536											
CNDP1	84735	broad.mit.edu	37	chr18	72226650	72226650	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgatggccgtggctgcGgacacgctgcagcgcctggg	17	11	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72226650	T	T	72226650	2	4	53	1	0	0	0	0	0	0	0	1	3625	1103	39	1		1	CNDP1	18	72226650	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	23985001	72226650	5850598	484	56537											
MUC16	94025	broad.mit.edu	37	chr19	9085343	9085343	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtactctcagatgtaaggcCagaaacatctgatctagaag	9	8	3	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9085343	T	T	9085343	3	4	53	1	0	0	0	0	1	0	0	0	10067	594	21	4	37387	4	MUC16	19	9085343	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08		9085343	50043640	485	56538											
PDE4A	5141	broad.mit.edu	37	chr19	10571737	10571737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcggctgccatccacgatGtggatcaccctggggtctcc	12	15	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10571737	T	T	10571737	3	4	53	1	0	0	0	0	1	0	0	0	11733	1377	48	3	1922	3	PDE4A	19	10571737	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1486394	10571737	48557246	486	56539											
NANOS3	342977	broad.mit.edu	37	chr19	13991251	13991251	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttctctccctccccctccActaggtttcagaggtgccgg	8	16	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13991251	C	C	13991251	1	2	53	0	1	0	0	0	0	0	0	0	10247	174	6	5		5	NANOS3	19	13991251	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	3419514	13991251	45137732	487	56540											
C19orf57	79173	broad.mit.edu	37	chr19	13996797	13996797	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgggccttggccactgcAacagggtctccattggcatg	14	12	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13996797	T	T	13996797	2	4	53	1	0	0	0	0	0	0	0	1	1958	117	5	5		5	C19orf57	19	13996797	Silent	SNP	A	TCGA-17-Z021-01A-01W-0746-08	5546	13996797	45132186	488	56541											
OR7C1	26664	broad.mit.edu	37	chr19	14910178	14910178	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagaactgagatagacCccaaagcccgtgccatagaa	10	12	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14910178	A	A	14910178	2	1	53	1	0	0	0	0	0	0	0	1	11311	610	22	2		2	OR7C1	19	14910178	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	913381	14910178	44218805	489	56542											
NCAN	1463	broad.mit.edu	37	chr19	19338661	19338661	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtccccactgagactgcCactgagccaacgggcctcag	10	15	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19338661	A	A	19338661	2	1	53	1	0	0	0	0	0	0	0	1	10299	581	21	2		2	NCAN	19	19338661	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4428483	19338661	39790322	490	56543											
ZNF682	91120	broad.mit.edu	37	chr19	20117104	20117104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccagttaaaagctttgcCacattcttcacatttgtagg	8	9	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20117104	A	A	20117104	3	1	53	1	0	0	0	0	1	0	0	0	18216	594	21	2	293	2	ZNF682	19	20117104	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	778443	20117104	39011879	491	56544											
ZNF85	7639	broad.mit.edu	37	chr19	21132799	21132799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcaaaggttttaaatgGccctcaacccttactatcca	7	11	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21132799	T	T	21132799	3	4	53	1	0	0	0	0	1	0	0	0	18322	1212	42	3	1493	3	ZNF85	19	21132799	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	1015695	21132799	37996184	492	56545											
ZNF536	9745	broad.mit.edu	37	chr19	31039643	31039643	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacaccatcggggtcacagtCaactgcaaagaccaagcccg	9	14	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039643	A	A	31039643	2	1	53	1	0	0	0	0	0	0	0	1	18101	813	29	3		3	ZNF536	19	31039643	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	9906844	31039643	28089340	493	56546											
TSHZ3	57616	broad.mit.edu	37	chr19	31768661	31768661	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcagcgagggggctcccatCcttgcacccatcccgcgggg	13	17	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768661	T	T	31768661	3	4	53	1	0	0	0	0	1	0	0	0	16750	855	30	4	1211	4	TSHZ3	19	31768661	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	729018	31768661	27360322	494	56547											
FBL	2091	broad.mit.edu	37	chr19	40330629	40330629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttagtgaaggagacaaaGccagggggcagggaggggga	21	4	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40330629	A	A	40330629	1	1	53	0	1	0	0	0	0	0	0	0	5753	986	34	4		4	FBL	19	40330629	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	8561968	40330629	18798354	495	56548											
CEACAM8	1088	broad.mit.edu	37	chr19	43097501	43097501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgccgtgagtgtctgcaGggtctggatgcaggaaagga	16	8	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43097501	T	T	43097501	1	4	53	0	1	0	0	0	0	0	0	0	3228	1015	35	2		2	CEACAM8	19	43097501	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2766872	43097501	16031482	496	56549											
CARD8	22900	broad.mit.edu	37	chr19	48733807	48733807	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggatggagaggcgagtcCcactggcgatccgcagcagg	18	10	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48733807	T	T	48733807	3	4	53	1	0	0	0	0	1	0	0	0	2677	623	22	4	710	4	CARD8	19	48733807	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	5636306	48733807	10395176	497	56550											
CCDC114	93233	broad.mit.edu	37	chr19	48801477	48801477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaggagctccaccagcCgcttctcaatgaggctcagg	11	14	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48801477	A	A	48801477	3	1	53	1	0	0	0	0	1	0	0	0	2777	652	23	1	778	1	CCDC114	19	48801477	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	67670	48801477	10327506	498	56551											
LILRA1	11024	broad.mit.edu	37	chr19	55107290	55107290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctcccaggccaacttcaCcctgggccctgtgagccgct	10	18	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55107290	A	A	55107290	3	1	53	1	0	0	0	0	1	0	0	0	8856	507	18	3	866	3	LILRA1	19	55107290	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	6305813	55107290	4021693	499	56552											
FCAR	2204	broad.mit.edu	37	chr19	55396733	55396733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatccagtgccaggccattCgtgaagcttacctgacccag	9	13	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55396733	A	A	55396733	3	1	53	1	0	0	0	0	1	0	0	0	5830	884	31	3	167	3	FCAR	19	55396733	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	289443	55396733	3732250	500	56553											
PLCB4	5332	broad.mit.edu	37	chr20	9391819	9391819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatgtcattttcaattaGgggctacagaatttaagctg	9	7	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9391819	T	T	9391819	1	4	53	0	1	0	0	0	0	0	0	0	12125	1015	35	2		2	PLCB4	20	9391819	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		9391819	53633701	501	56554											
PLCB4	5332	broad.mit.edu	37	chr20	9400527	9400527	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctgaaactcctgttgatGgtgttattgcagccacttgc	9	10	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9400527	A	A	9400527	3	1	53	1	0	0	0	0	1	0	0	0	12125	1348	47	4	2215	4	PLCB4	20	9400527	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	8708	9400527	53624993	502	56555											
SAMHD1	25939	broad.mit.edu	37	chr20	35559122	35559122	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagagaggtaacatatgtTatgattttacataacaactt	6	5	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35559122	A	A	35559122	1	1	53	0	1	0	0	0	0	0	0	0	13939	1769	61	5		5	SAMHD1	20	35559122	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	26158595	35559122	27466398	503	56556											
DHX35	60625	broad.mit.edu	37	chr20	37617507	37617507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgctgggccacgaggtgGgctactgcatccgctttgat	14	11	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37617507	T	T	37617507	3	4	53	1	0	0	0	0	1	0	0	0	4548	1232	43	2	415	2	DHX35	20	37617507	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2058385	37617507	25408013	504	56557											
SPO11	23626	broad.mit.edu	37	chr20	55911012	55911012	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagactaatgtatactgttaTggtgattggtaagaggattt	11	2	0	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55911012	C	C	55911012	1	2	53	0	1	0	0	0	0	0	0	0	15195	1479	51	5		5	SPO11	20	55911012	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	18293505	55911012	7114508	505	56558											
PCK1	5105	broad.mit.edu	37	chr20	56138640	56138640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctgggtataaccaaccCtgagggtgagaagaagtacc	12	8	1	3			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56138640	A	A	56138640	3	1	53	1	0	0	0	0	1	0	0	0	11675	681	24	2	836	2	PCK1	20	56138640	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	227628	56138640	6886880	506	56559											
PCK1	5105	broad.mit.edu	37	chr20	56140518	56140518	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccagcagccaaactgccCaagatcttccatgtcaactg	6	16	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56140518	A	A	56140518	2	1	53	1	0	0	0	0	0	0	0	1	11675	581	21	2		2	PCK1	20	56140518	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	1878	56140518	6885002	507	56560											
PHACTR3	116154	broad.mit.edu	37	chr20	58348252	58348252	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggggagcgtcctttccGctcatggtccccagtctcag	12	14	2	0	rs150484938	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58348252	C	C	58348252	1	2	53	0	1	0	0	0	0	0	0	0	11906	1102	38	4		4	PHACTR3	20	58348252	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	2207734	58348252	4677268	508	56561											
BAGE2	85319	broad.mit.edu	37	chr21	11081298	11081298	+	Intron	SNP	A	G	G													ttagctgagcatgggggcatAcgactataaacccagctact					rs78302590		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11081298	G	G	11081298	1	3	53	0	1	0	0	0	0	0	0	0	1297	406	14	5		5	BAGE2	21	11081298	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08		11081298	37048597	509	56562	271	2									
BAGE2	85319	broad.mit.edu	37	chr21	11081308	11081308	+	Intron	SNP	A	T	T													atgggggcatacgactataaAcccagctactcgagaggcgg					rs79256376		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11081308	T	T	11081308	1	4	53	0	1	0	0	0	0	0	0	0	1297	58	2	5		5	BAGE2	21	11081308	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	10	11081308	37048587	510	56563	271	2									
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253488	32253488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccactggttggcagacaCtggagatgcctcccaggggc	14	14	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32253488	A	A	32253488	3	1	53	1	0	0	0	0	1	0	0	0	8588	565	20	3	139	3	KRTAP11-1	21	32253488	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	21172180	32253488	15876407	511	56564											
COL6A1	1291	broad.mit.edu	37	chr21	47422372	47422372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggcgccccgccagccagGgtggccttgtccccagaaag	14	15	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47422372	T	T	47422372	1	4	53	0	1	0	0	0	0	0	0	0	3731	1247	43	2		2	COL6A1	21	47422372	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	15168884	47422372	707523	512	56565											
CECR5	27440	broad.mit.edu	37	chr22	17618883	17618883	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcgcccacaggtccaggcTcaccccctcacctccaccgc	6	23	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17618883	C	C	17618883	1	2	53	0	1	0	0	0	0	0	0	0	3237	1566	54	5		5	CECR5	22	17618883	3'UTR	SNP	T	TCGA-17-Z021-01A-01W-0746-08		17618883	33685683	513	56566											
SLC7A4	6545	broad.mit.edu	37	chr22	21384605	21384605	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatagacaatgcgtggcaGggagaagaggaggctgagca	18	6	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21384605	T	T	21384605	3	4	53	1	0	0	0	0	1	0	0	0	14813	991	35	2	901	2	SLC7A4	22	21384605	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3765722	21384605	29919961	514	56567											
ADRBK2	157	broad.mit.edu	37	chr22	26012819	26012819	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgatgatgttgtttatgcCtcttggaattaaagtaactt	10	5	1	1	rs139556944	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26012819	T	T	26012819	1	4	53	0	1	0	0	0	0	0	0	0	344	696	24	4		4	ADRBK2	22	26012819	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	4628214	26012819	25291747	515	56568											
MYO18B	84700	broad.mit.edu	37	chr22	26168281	26168281	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagaaggccagaggagacTctgtgtgatggtttcacagg	15	8	2	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26168281	A	A	26168281	1	1	53	0	1	0	0	0	0	0	0	0	10160	1566	54	5		5	MYO18B	22	26168281	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	155462	26168281	25136285	516	56569											
MGAT3	4248	broad.mit.edu	37	chr22	39884033	39884033	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggacgtgcgcttccacgaGctgggcgacgtggtggacgc	17	12	0	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39884033	A	A	39884033	2	1	53	1	0	0	0	0	0	0	0	1	9637	962	34	4		4	MGAT3	22	39884033	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	13715752	39884033	11420533	517	56570											
SCUBE1	80274	broad.mit.edu	37	chr22	43617230	43617230	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgcctggctgtggggccGgaggtggcacttggcatctc	17	11	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43617230	T	T	43617230	2	4	53	1	0	0	0	0	0	0	0	1	14057	1115	39	1		1	SCUBE1	22	43617230	Silent	SNP	G	TCGA-17-Z021-01A-01W-0746-08	3733197	43617230	7687336	518	56571											
FRMPD4	9758	broad.mit.edu	37	chrX	12276036	12276036	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccttcttcgcggtgtcGtgcctactcttattcctctt	6	15	4	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12276036	A	A	12276036	1	1	53	0	1	0	0	0	0	0	0	0	6119	1160	40	4		4	FRMPD4	23	12276036	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08		12276036	142994524	519	56572											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29472454	29472454	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcatattttagtgtatgtAcctcagttggaaggtagctg	10	7	2	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29472454	G	G	29472454	1	3	53	0	1	0	0	0	0	0	0	0	7731	406	14	5		5	IL1RAPL1	23	29472454	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	17196418	29472454	125798106	520	56573											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29935735	29935735	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattttttttccttttaacCtgtatagtcaagattaacat	3	6	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29935735	A	A	29935735	1	1	53	0	1	0	0	0	0	0	0	0	7731	696	24	2		2	IL1RAPL1	23	29935735	Intron	SNP	C	TCGA-17-Z021-01A-01W-0746-08	463281	29935735	125334825	521	56574											
MAGEB4	4115	broad.mit.edu	37	chrX	30261234	30261234	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagccaggcgtggcactAcagccatgactagtgcgtat	12	11	0	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30261234	G	G	30261234	3	3	53	1	0	0	0	0	1	0	0	0	9270	391	14	5	984	5	MAGEB4	23	30261234	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	325499	30261234	125009326	522	56575											
FAM47B	170062	broad.mit.edu	37	chrX	34962649	34962649	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaagaagtgatgaacctttGattgaccccaagcccgtact	8	11	0	5			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34962649	T	T	34962649	3	4	53	1	0	0	0	0	1	0	0	0	5621	1281	45	3	1703	3	FAM47B	23	34962649	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4701415	34962649	120307911	523	56576											
CXorf22	170063	broad.mit.edu	37	chrX	35944189	35944189	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctggccttcagatgaCagctatggtggaatatcatc	10	9	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35944189	G	G	35944189	3	3	53	1	0	0	0	0	1	0	0	0	4135	478	17	4	311	4	CXorf22	23	35944189	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	981540	35944189	119326371	524	56577											
SLC9A7	84679	broad.mit.edu	37	chrX	46591668	46591668	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaataaaatgacgttgagAcatcattcactcatacttac	4	8	3	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46591668	G	G	46591668	1	3	53	0	1	0	0	0	0	0	0	0	14833	290	10	5		5	SLC9A7	23	46591668	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	10647479	46591668	108678892	525	56578											
SSX5	6758	broad.mit.edu	37	chrX	48053732	48053732	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtggctcatgtctgtagtAgcagctctttgggaggctga	15	7	3	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48053732	T	T	48053732	1	4	53	0	1	0	0	0	0	0	0	0	15326	435	15	5		5	SSX5	23	48053732	Intron	SNP	A	TCGA-17-Z021-01A-01W-0746-08	1462064	48053732	107216828	526	56579											
CCNB3	85417	broad.mit.edu	37	chrX	50053799	50053799	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccctctttaagcgacActcagctttgtgggagaagc	13	10	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50053799	C	C	50053799	3	2	53	1	0	0	0	0	1	0	0	0	2944	159	6	5	2644	5	CCNB3	23	50053799	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	2000067	50053799	105216761	527	56580											
FAM123B	139285	broad.mit.edu	37	chrX	63411301	63411301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttctcgggttctggcCtccctgccatgagcttccca	11	15	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63411301	A	A	63411301	3	1	53	1	0	0	0	0	1	0	0	0	5469	680	24	2	1545	2	FAM123B	23	63411301	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	13357502	63411301	91859259	528	56581											
HEPH	9843	broad.mit.edu	37	chrX	65427988	65427988	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaggtgaagttggtgatatCctgactgtggtattcaagaa	12	4	1	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65427988	A	A	65427988	2	1	53	1	0	0	0	0	0	0	0	1	7121	845	30	3		3	HEPH	23	65427988	Silent	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2016687	65427988	89842572	529	56582											
ARR3	407	broad.mit.edu	37	chrX	69500067	69500067	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagaccgggaatggacaaaGagctgctggggatcctggtg	16	7	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69500067	C	C	69500067	3	2	53	1	0	0	0	0	1	0	0	0	983	943	33	4	974	4	ARR3	23	69500067	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	4072079	69500067	85770493	530	56583											
PGK1	5230	broad.mit.edu	37	chrX	77378447	77378447	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgctcaacaacatggagGtaggaaacaaatgccaagtg	12	7	1	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77378447	T	T	77378447	5	4	53	1	0	0	0	0	0	0	1	0	11885	1275	44	3	783	3	PGK1	23	77378447	Splice_Site	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7878380	77378447	77892113	531	56584											
RPS6KA6	27330	broad.mit.edu	37	chrX	83419510	83419510	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taacaagatccacacttactGaaaaacaaaaggacaaagga	6	8	0	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83419510	A	A	83419510	1	1	53	0	1	0	0	0	0	0	0	0	13766	1305	45	4		4	RPS6KA6	23	83419510	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	6041063	83419510	71851050	532	56585											
SRPX2	27286	broad.mit.edu	37	chrX	99920696	99920696	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatattgttcattaatccTgctctaccctgacccacccc	3	17	2	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99920696	A	A	99920696	1	1	53	0	1	0	0	0	0	0	0	0	15283	1595	55	5		5	SRPX2	23	99920696	Intron	SNP	T	TCGA-17-Z021-01A-01W-0746-08	16501186	99920696	55349864	533	56586											
IL13RA2	3598	broad.mit.edu	37	chrX	114245561	114245561	+	Intron	DEL	A	-	-													cactatgataagcaatagggAaaaaacagtagggaaagcag					rs17095041		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114245561	-	-	114245561	6	5	53	0	1	1	0	1	0	0	0	0	7700	261	9	0		0	IL13RA2	23	114245561	Intron	DEL	A	TCGA-17-Z021-01A-01W-0746-08	14324865	114245561	41024999	534	56587											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298905	125298905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgttctgctggcgctggcGcggatccaggaaggagacgt	17	9	1	1			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125298905	T	T	125298905	3	4	53	1	0	0	0	0	1	0	0	0	4298	1087	38	3	392	3	DCAF12L2	23	125298905	Missense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	11053344	125298905	29971655	535	56588											
OCRL	4952	broad.mit.edu	37	chrX	128707237	128707238	+	Intron	INS	-	A	A													gttgtgggatacaagtgcagINSaacgtataggcttgttacat					rs11440167		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128707238	A	A	128707237	6	5	53	0	1	1	1	0	0	0	0	0	10918	957	33	0		0	OCRL	23	128707237	Intron	INS	-	TCGA-17-Z021-01A-01W-0746-08	3408332	128707237	26563323	536	56589											
AIFM1	9131	broad.mit.edu	37	chrX	129272693	129272693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctgcaggatcacatcaGtttagtccattaatttccaa	5	10	3	0			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129272693	T	T	129272693	1	4	53	0	1	0	0	0	0	0	0	0	426	1044	36	3		3	AIFM1	23	129272693	Intron	SNP	G	TCGA-17-Z021-01A-01W-0746-08	565456	129272693	25997867	537	56590											
RAB33A	9363	broad.mit.edu	37	chrX	129306262	129306262	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggcgtggacttcagggagAagaccgtggaaatcgagggc	17	8	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129306262	C	C	129306262	3	2	53	1	0	0	0	0	1	0	0	0	13030	247	9	5	228	5	RAB33A	23	129306262	Missense_Mutation	SNP	A	TCGA-17-Z021-01A-01W-0746-08	33569	129306262	25964298	538	56591											
RAP2C	57826	broad.mit.edu	37	chrX	131351168	131351168	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggaagagtccacttcgatCtctttgcggtagaaatcttc	11	9	2	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131351168	A	A	131351168	3	1	53	1	0	0	0	0	1	0	0	0	13150	912	32	3	430	3	RAP2C	23	131351168	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	2044906	131351168	23919392	539	56592											
CXorf66	347487	broad.mit.edu	37	chrX	139038398	139038398	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgccctgcctagactcactGacctttttggattaaaatgt	7	11	1	2			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139038398	T	T	139038398	4	4	53	1	0	0	0	0	0	1	0	0	4151	1294	45	3	346	3	CXorf66	23	139038398	Nonsense_Mutation	SNP	G	TCGA-17-Z021-01A-01W-0746-08	7687230	139038398	16232162	540	56593											
F8	2157	broad.mit.edu	37	chrX	154157832	154157832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagatggaaatgatgatacCtttgcaatgggtaatggaga	12	3	0	4			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154157832	A	A	154157832	3	1	53	1	0	0	0	0	1	0	0	0	5393	680	24	2	2902	2	F8	23	154157832	Missense_Mutation	SNP	C	TCGA-17-Z021-01A-01W-0746-08	15119434	154157832	1112728	541	56594											
RER1	11079	broad.mit.edu	37	chr1	2328561	2328561	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttgtctttctagatttatCagtcctggctagacaagtcc	7	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2328561	T	T	2328561	4	4	54	1	0	0	0	0	0	1	0	0	13338	827	29	4	94	4	RER1	1	2328561	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08		2328561	246922060	1	56595											
PRDM16	63976	broad.mit.edu	37	chr1	3348615	3348615	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggacctccgcagagcagctGaggaagcatttgaagttaaa	12	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3348615	A	A	3348615	3	1	54	1	0	0	0	0	1	0	0	0	12563	1291	45	4	3669	4	PRDM16	1	3348615	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1020054	3348615	245902006	2	56596											
WDR8	49856	broad.mit.edu	37	chr1	3551675	3551675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaggtgaggcagggccCggcccgctgggcggtcggac	19	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3551675	A	A	3551675	1	1	54	0	1	0	0	0	0	0	0	0	17456	667	23	1		1	WDR8	1	3551675	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	203060	3551675	245698946	3	56597											
AJAP1	55966	broad.mit.edu	37	chr1	4772112	4772112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtcgccgccccggccgcCccggctgtggagttttagga	16	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4772112	A	A	4772112	3	1	54	1	0	0	0	0	1	0	0	0	438	623	22	2	188	2	AJAP1	1	4772112	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1220437	4772112	244478509	4	56598											
KCNAB2	8514	broad.mit.edu	37	chr1	6145212	6145212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtggccacagtgggtctgGgtttgatttttctgtttggc	14	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6145212	T	T	6145212	1	4	54	0	1	0	0	0	0	0	0	0	8080	1247	43	2		2	KCNAB2	1	6145212	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1373100	6145212	243105409	5	56599											
CHD5	26038	broad.mit.edu	37	chr1	6202513	6202513	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaacacgatggtctgcacCgtcttgcccagacccatctc	9	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6202513	A	A	6202513	2	1	54	1	0	0	0	0	0	0	0	1	3359	639	23	1		1	CHD5	1	6202513	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	57301	6202513	243048108	6	56600											
GPR153	387509	broad.mit.edu	37	chr1	6311386	6311386	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccctggggccactctcaGgccatcctcaccatcgtctg	8	18	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6311386	A	A	6311386	1	1	54	0	1	0	0	0	0	0	0	0	6724	1015	35	4		4	GPR153	1	6311386	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	108873	6311386	242939235	7	56601											
CAMTA1	23261	broad.mit.edu	37	chr1	6911428	6911428	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaatgaaatatggaaataAaaatggtctggacatacatt	8	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6911428	G	G	6911428	1	3	54	0	1	0	0	0	0	0	0	0	2639	29	1	5		5	CAMTA1	1	6911428	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	600042	6911428	242339193	8	56602											
CAMTA1	23261	broad.mit.edu	37	chr1	7796531	7796531	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccactcaaagactttccgcgGaatgaccctactccacctgg	7	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7796531	C	C	7796531	3	2	54	1	0	0	0	0	1	0	0	0	2639	1174	41	4	3244	4	CAMTA1	1	7796531	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	885103	7796531	241454090	9	56603											
RERE	473	broad.mit.edu	37	chr1	8674868	8674868	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagatgacctctgaaacctCagataatttgttctaccact	6	11	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8674868	T	T	8674868	1	4	54	0	1	0	0	0	0	0	0	0	13339	841	29	4		4	RERE	1	8674868	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	878337	8674868	240575753	10	56604											
SPSB1	80176	broad.mit.edu	37	chr1	9415995	9415995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaagactgtggacatgagGgaccccacgtacaggcccct	11	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9415995	T	T	9415995	3	4	54	1	0	0	0	0	1	0	0	0	15230	1223	43	2	47	2	SPSB1	1	9415995	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	741127	9415995	239834626	11	56605											
MTOR	2475	broad.mit.edu	37	chr1	11181391	11181391	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcaaacacctccaccttcTgcatcagagtcaagtggtca	7	14	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11181391	C	C	11181391	3	2	54	1	0	0	0	0	1	0	0	0	10048	1580	55	5	844	5	MTOR	1	11181391	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1765396	11181391	238069230	12	56606											
MTOR	2475	broad.mit.edu	37	chr1	11270872	11270872	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagaagtatagttcaccTtgacaattctgcagatgagc	9	7	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11270872	A	A	11270872	3	1	54	1	0	0	0	0	1	0	0	0	10048	1623	56	5	4136	5	MTOR	1	11270872	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	89481	11270872	237979749	13	56607											
MTOR	2475	broad.mit.edu	37	chr1	11313974	11313974	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccgatcatcccgattcatGcccttctctttggccaaggt	7	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11313974	T	T	11313974	2	4	54	1	0	0	0	0	0	0	0	1	10048	1306	46	3		3	MTOR	1	11313974	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	43102	11313974	237936647	14	56608											
AADACL3	126767	broad.mit.edu	37	chr1	12776381	12776381	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttatgtgtcccctccagctGaccattaaggaaggcggcag	11	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12776381	C	C	12776381	1	2	54	0	1	0	0	0	0	0	0	0	12	1305	45	4		4	AADACL3	1	12776381	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1462407	12776381	236474240	15	56609											
AADACL3	126767	broad.mit.edu	37	chr1	12785336	12785336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttcggaggggcaatagcCgcagtggtttgtcaacaact	13	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12785336	A	A	12785336	2	1	54	1	0	0	0	0	0	0	0	1	12	639	23	1		1	AADACL3	1	12785336	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8955	12785336	236465285	16	56610											
CTRC	11330	broad.mit.edu	37	chr1	15764828	15764828	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacagtaaccacccaaggtCagggaaagggccttatcaga	10	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15764828	A	A	15764828	1	1	54	0	1	0	0	0	0	0	0	0	4061	841	29	3		3	CTRC	1	15764828	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2979492	15764828	233485793	17	56611											
CELA2B	51032	broad.mit.edu	37	chr1	15807569	15807569	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctttttcagccacagCcacagacctgtgtttctccc	6	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15807569	G	G	15807569	1	3	54	0	1	0	0	0	0	0	0	0	3242	754	26	4		4	CELA2B	1	15807569	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42741	15807569	233443052	18	56612											
CASP9	842	broad.mit.edu	37	chr1	15820426	15820426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcttcagagtgagcccaCtgctcaaagatgtcgtccag	11	11	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15820426	A	A	15820426	3	1	54	1	0	0	0	0	1	0	0	0	2705	564	20	3	139	3	CASP9	1	15820426	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	12857	15820426	233430195	19	56613											
CASP9	842	broad.mit.edu	37	chr1	15834293	15834293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctcctgacacacctgCagggaaggacctgaggggtg	16	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15834293	A	A	15834293	1	1	54	0	1	0	0	0	0	0	0	0	2705	725	25	3		3	CASP9	1	15834293	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13867	15834293	233416328	20	56614											
DDI2	84301	broad.mit.edu	37	chr1	15960137	15960137	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggttatctgacattggttGggcatctgcttggaggtagc	14	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15960137	A	A	15960137	1	1	54	0	1	0	0	0	0	0	0	0	4362	1363	47	4		4	DDI2	1	15960137	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	125844	15960137	233290484	21	56615											
EPHA2	1969	broad.mit.edu	37	chr1	16474723	16474723	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagccttaataaggaaactGatgtctgggaaggatctata	10	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16474723	A	A	16474723	1	1	54	0	1	0	0	0	0	0	0	0	5209	1305	45	4		4	EPHA2	1	16474723	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	514586	16474723	232775898	22	56616											
NBPF1	55672	broad.mit.edu	37	chr1	16907235	16907235	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagacacaaggaaaatagagGctacctgggagaatgtttac	12	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16907235	C	C	16907235	1	2	54	0	1	0	0	0	0	0	0	0	10286	1218	42	4		4	NBPF1	1	16907235	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	432512	16907235	232343386	23	56617											
NBPF1	55672	broad.mit.edu	37	chr1	16913159	16913159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgagacttcttattaataGctaagacaagccaatgaaaa	7	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16913159	A	A	16913159	1	1	54	0	1	0	0	0	0	0	0	0	10286	986	34	4		4	NBPF1	1	16913159	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5924	16913159	232337462	24	56618											
CROCC	9696	broad.mit.edu	37	chr1	17250764	17250764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgccctccctgttgggGggaggatgtcccactggacc	13	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17250764	A	A	17250764	1	1	54	0	1	0	0	0	0	0	0	0	3925	1247	43	4		4	CROCC	1	17250764	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	337605	17250764	231999857	25	56619											
PADI3	51702	broad.mit.edu	37	chr1	17585920	17585920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatatgtttgtgtggggtcCaggcttgactcgcaggagct	15	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17585920	A	A	17585920	1	1	54	0	1	0	0	0	0	0	0	0	11473	609	21	2		2	PADI3	1	17585920	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	335156	17585920	231664701	26	56620											
PADI3	51702	broad.mit.edu	37	chr1	17588668	17588668	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccatgagcctctgccccTggcctatgcggtgctctacc	10	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17588668	A	A	17588668	3	1	54	1	0	0	0	0	1	0	0	0	11473	1580	55	5	324	5	PADI3	1	17588668	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2748	17588668	231661953	27	56621											
ACTL8	81569	broad.mit.edu	37	chr1	18101140	18101140	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggggtaggcatgtgcctgGagtgtttgaagagcagaagg	18	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18101140	T	T	18101140	1	4	54	0	1	0	0	0	0	0	0	0	202	1189	41	3		3	ACTL8	1	18101140	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	512472	18101140	231149481	28	56622											
IGSF21	84966	broad.mit.edu	37	chr1	18525382	18525382	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcgaataaaaggacaataGgaagacctctcccctgcccc	7	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18525382	A	A	18525382	1	1	54	0	1	0	0	0	0	0	0	0	7669	1015	35	4		4	IGSF21	1	18525382	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	424242	18525382	230725239	29	56623											
IGSF21	84966	broad.mit.edu	37	chr1	18564065	18564065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttctcttttccgcctgGgcaaatcttactcattctct	4	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18564065	T	T	18564065	1	4	54	0	1	0	0	0	0	0	0	0	7669	1247	43	2		2	IGSF21	1	18564065	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	38683	18564065	230686556	30	56624											
IGSF21	84966	broad.mit.edu	37	chr1	18632403	18632403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttgaggtcacatatccCagtagcgatggagctaagac	11	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18632403	A	A	18632403	1	1	54	0	1	0	0	0	0	0	0	0	7669	609	21	2		2	IGSF21	1	18632403	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68338	18632403	230618218	31	56625											
PAX7	5081	broad.mit.edu	37	chr1	19062125	19062125	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatggccttttccccacaGgtgatgagcatcttgggcaa	10	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19062125	T	T	19062125	5	4	54	1	0	0	0	0	0	0	1	0	11578	1014	35	2	1185	2	PAX7	1	19062125	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	429722	19062125	230188496	32	56626											
UBR4	23352	broad.mit.edu	37	chr1	19437263	19437263	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggttggcccagtggcccttCagggctgtggagaccttgcc	16	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19437263	T	T	19437263	2	4	54	1	0	0	0	0	0	0	0	1	17030	813	29	4		4	UBR4	1	19437263	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	375138	19437263	229813358	33	56627											
RAP1GAP	5909	broad.mit.edu	37	chr1	21924210	21924210	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttcagagggggtggccCggctaacagccctgcagaca	13	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21924210	A	A	21924210	1	1	54	0	1	0	0	0	0	0	0	0	13145	667	23	1		1	RAP1GAP	1	21924210	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2486947	21924210	227326411	34	56628											
MYOM3	127294	broad.mit.edu	37	chr1	24394882	24394882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggacaaactccagagtcCttttccctgttctgggaact	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24394882	A	A	24394882	1	1	54	0	1	0	0	0	0	0	0	0	10187	696	24	2		2	MYOM3	1	24394882	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2470672	24394882	224855739	35	56629											
GRHL3	57822	broad.mit.edu	37	chr1	24666013	24666013	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgaccttgtgatcccCctgcctcggcctcccaaagt	7	18	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24666013	T	T	24666013	1	4	54	0	1	0	0	0	0	0	0	0	6831	638	22	4		4	GRHL3	1	24666013	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	271131	24666013	224584608	36	56630											
C1orf135	79000	broad.mit.edu	37	chr1	26162282	26162282	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttcttggactctttgttGatctgactttctgtatgaga	8	6	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26162282	A	A	26162282	2	1	54	1	0	0	0	0	0	0	0	1	2019	1280	45	4		4	C1orf135	1	26162282	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1496269	26162282	223088339	37	56631											
PAFAH2	5051	broad.mit.edu	37	chr1	26298275	26298275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtggaagctggaccatGgacctctgcaggcctcgccc	14	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26298275	T	T	26298275	1	4	54	0	1	0	0	0	0	0	0	0	11481	1363	47	2		2	PAFAH2	1	26298275	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	135993	26298275	222952346	38	56632											
UBXN11	91544	broad.mit.edu	37	chr1	26629460	26629460	+	Intron	SNP	C	G	G													gacagactcagggctccaagCccagggggtagcctgaagtt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26629460	G	G	26629460	1	3	54	0	1	0	0	0	0	0	0	0	17039	754	26	4		4	UBXN11	1	26629460	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	331185	26629460	222621161	39	56633	272	2									
UBXN11	91544	broad.mit.edu	37	chr1	26629462	26629462	+	Intron	SNP	C	A	A													cagactcagggctccaagccCagggggtagcctgaagtttc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26629462	A	A	26629462	1	1	54	0	1	0	0	0	0	0	0	0	17039	609	21	2		2	UBXN11	1	26629462	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2	26629462	222621159	40	56634	272	2									
NKAIN1	79570	broad.mit.edu	37	chr1	31656765	31656765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcctccagagccaggcGggagttcagaacaggtgtca	15	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31656765	T	T	31656765	3	4	54	1	0	0	0	0	1	0	0	0	10530	1116	39	1	269	1	NKAIN1	1	31656765	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5027303	31656765	217593856	41	56635											
COL16A1	1307	broad.mit.edu	37	chr1	32148878	32148878	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcacagttagttaacccAtatcctagaatggccccctc	7	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32148878	T	T	32148878	1	4	54	0	1	0	0	0	0	0	0	0	3705	232	8	5		5	COL16A1	1	32148878	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	492113	32148878	217101743	42	56636											
CCDC28B	79140	broad.mit.edu	37	chr1	32670241	32670241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatcctttccaaggaaccCgtctatgtgtgtgtgttcct	9	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32670241	A	A	32670241	1	1	54	0	1	0	0	0	0	0	0	0	2830	667	23	1		1	CCDC28B	1	32670241	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	521363	32670241	216580380	43	56637											
BSDC1	55108	broad.mit.edu	37	chr1	32842055	32842055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtccagtctcacccacatCcacagccaggccctgttcct	8	18	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32842055	A	A	32842055	3	1	54	1	0	0	0	0	1	0	0	0	1537	855	30	3	340	3	BSDC1	1	32842055	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	171814	32842055	216408566	44	56638											
HPCA	3208	broad.mit.edu	37	chr1	33354567	33354567	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgagagaacacagagttctCagagctggagctgcaggagt	15	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33354567	G	G	33354567	4	3	54	1	0	0	0	0	0	1	0	0	7396	838	29	4	70	4	HPCA	1	33354567	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	512512	33354567	215896054	45	56639											
ADC	113451	broad.mit.edu	37	chr1	33549534	33549534	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggatggggtctcacattCatccacttcttgtcattcag	9	11	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33549534	T	T	33549534	1	4	54	0	1	0	0	0	0	0	0	0	287	841	29	4		4	ADC	1	33549534	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	194967	33549534	215701087	46	56640											
CSMD2	114784	broad.mit.edu	37	chr1	34145914	34145914	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatccaacccaagaatcTttgccttgcaatatgaatgt	5	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34145914	C	C	34145914	1	2	54	0	1	0	0	0	0	0	0	0	3979	1624	56	5		5	CSMD2	1	34145914	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	596380	34145914	215104707	47	56641											
CSMD2	114784	broad.mit.edu	37	chr1	34358535	34358535	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgagtgcattcgtaggaGgtgaatgaccaaatgcagac	12	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34358535	A	A	34358535	1	1	54	0	1	0	0	0	0	0	0	0	3979	1015	35	4		4	CSMD2	1	34358535	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	212621	34358535	214892086	48	56642											
CSMD2	114784	broad.mit.edu	37	chr1	34389595	34389595	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgttaaccaacctctcttCatgccctacatcctccaatc	2	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34389595	A	A	34389595	1	1	54	0	1	0	0	0	0	0	0	0	3979	841	29	3		3	CSMD2	1	34389595	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	31060	34389595	214861026	49	56643											
CSMD2	114784	broad.mit.edu	37	chr1	34404997	34404997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgcttatgagtgtgGggtgggaagggcaggtcagg	21	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34404997	T	T	34404997	1	4	54	0	1	0	0	0	0	0	0	0	3979	1247	43	2		2	CSMD2	1	34404997	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15402	34404997	214845624	50	56644											
CSMD2	114784	broad.mit.edu	37	chr1	34450004	34450004	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctaacaagctctcaggggGtgcccatgcagctgcttctc	10	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34450004	A	A	34450004	1	1	54	0	1	0	0	0	0	0	0	0	3979	1276	44	4		4	CSMD2	1	34450004	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45007	34450004	214800617	51	56645											
CSMD2	114784	broad.mit.edu	37	chr1	34454445	34454445	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctagaacaactgaatattcAcacagggaaaaaatgaacct	7	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34454445	T	T	34454445	1	4	54	0	1	0	0	0	0	0	0	0	3979	174	6	5		5	CSMD2	1	34454445	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4441	34454445	214796176	52	56646											
CSMD2	114784	broad.mit.edu	37	chr1	34474325	34474325	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttattcattaatagcTttgtatttatctgtgtggtt	6	4	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34474325	A	A	34474325	1	1	54	0	1	0	0	0	0	0	0	0	3979	1624	56	5		5	CSMD2	1	34474325	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	19880	34474325	214776296	53	56647											
ZMYM4	9202	broad.mit.edu	37	chr1	35817103	35817103	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagcccaagaaacaaaaaaGaagaggtggaaccatcccaa	9	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35817103	C	C	35817103	1	2	54	0	1	0	0	0	0	0	0	0	17828	957	33	4		4	ZMYM4	1	35817103	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1342778	35817103	213433518	54	56648											
ZMYM4	9202	broad.mit.edu	37	chr1	35862195	35862195	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattattgtggtgccagttcCcgtaccagtgtttgttccca	10	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35862195	T	T	35862195	3	4	54	1	0	0	0	0	1	0	0	0	17828	623	22	4	3028	4	ZMYM4	1	35862195	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45092	35862195	213388426	55	56649											
ZMYM4	9202	broad.mit.edu	37	chr1	35870651	35870651	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaagtctatagtggctgtgGagcccaggagtcttattcaa	12	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35870651	T	T	35870651	4	4	54	1	0	0	0	0	0	1	0	0	17828	1175	41	3	3650	3	ZMYM4	1	35870651	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8456	35870651	213379970	56	56650											
EIF2C3	192669	broad.mit.edu	37	chr1	36521447	36521447	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaggacacctccagccatAcagaaaccaacactgtgtgg	9	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36521447	G	G	36521447	1	3	54	0	1	0	0	0	0	0	0	0	5047	406	14	5		5	EIF2C3	1	36521447	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	650796	36521447	212729174	57	56651											
GRIK3	2899	broad.mit.edu	37	chr1	37298808	37298808	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcctaatgggctgagctctGgcgtcgggtctcctgcacta	13	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37298808	C	C	37298808	1	2	54	0	1	0	0	0	0	0	0	0	6841	1363	47	4		4	GRIK3	1	37298808	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	777361	37298808	211951813	58	56652											
GRIK3	2899	broad.mit.edu	37	chr1	37397792	37397792	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgacaatttcctgctgattGaccgtaactccaatttgact	6	10	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37397792	T	T	37397792	1	4	54	0	1	0	0	0	0	0	0	0	6841	1305	45	3		3	GRIK3	1	37397792	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	98984	37397792	211852829	59	56653											
RSPO1	284654	broad.mit.edu	37	chr1	38090056	38090056	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggccgggtggactcagcGagggcaaggggtgcttgtgg	22	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38090056	T	T	38090056	1	4	54	0	1	0	0	0	0	0	0	0	13820	1073	37	3		3	RSPO1	1	38090056	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	692264	38090056	211160565	60	56654											
EPHA10	284656	broad.mit.edu	37	chr1	38185567	38185567	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggcatgcagctggagcCacgggttactcacgtcttgg	14	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38185567	T	T	38185567	1	4	54	0	1	0	0	0	0	0	0	0	5208	609	21	4		4	EPHA10	1	38185567	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	95511	38185567	211065054	61	56655											
MFSD2A	84879	broad.mit.edu	37	chr1	40432949	40432949	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaggctggcccaaggtcatGaaaggatgagggaggcttct	15	8	3	2	rs74067887	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40432949	C	C	40432949	1	2	54	0	1	0	0	0	0	0	0	0	9623	1305	45	4		4	MFSD2A	1	40432949	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2247382	40432949	208817672	62	56656											
SMAP2	64744	broad.mit.edu	37	chr1	40878891	40878891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcacagctggggctaaagGgttctgcatctggattggac	13	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40878891	T	T	40878891	1	4	54	0	1	0	0	0	0	0	0	0	14881	1247	43	2		2	SMAP2	1	40878891	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	445942	40878891	208371730	63	56657											
NFYC	4802	broad.mit.edu	37	chr1	41223798	41223798	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttccacccaacaggaggaGgtgcgccagtctgtaactcc	10	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41223798	C	C	41223798	3	2	54	1	0	0	0	0	1	0	0	0	10486	991	35	4	411	4	NFYC	1	41223798	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	344907	41223798	208026823	64	56658											
KCNQ4	9132	broad.mit.edu	37	chr1	41283727	41283727	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaactccaggagaggggtccGaggaggccctggtcccccta	14	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41283727	T	T	41283727	1	4	54	0	1	0	0	0	0	0	0	0	8155	1073	37	3		3	KCNQ4	1	41283727	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	59929	41283727	207966894	65	56659											
HIVEP3	59269	broad.mit.edu	37	chr1	42302739	42302739	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcttcagcttcatctcCctccaccctttcaataattc	1	17	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42302739	T	T	42302739	1	4	54	0	1	0	0	0	0	0	0	0	7255	638	22	4		4	HIVEP3	1	42302739	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1019012	42302739	206947882	66	56660											
WDR65	149465	broad.mit.edu	37	chr1	43652305	43652305	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaaaactctgaaagcctaagg					rs1976284		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43652305	-	-	43652305	6	5	54	0	1	1	0	1	0	0	0	0	17443	957	33	0		0	WDR65	1	43652305	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	1349566	43652305	205598316	67	56661											
WDR65	149465	broad.mit.edu	37	chr1	43652635	43652635	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaataagttagcataaactCatgcatccccttaatacaga	4	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43652635	T	T	43652635	1	4	54	0	1	0	0	0	0	0	0	0	17443	841	29	4		4	WDR65	1	43652635	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	330	43652635	205597986	68	56662											
KIAA0467	23334	broad.mit.edu	37	chr1	43908875	43908875	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagagctggagcgccagatGaagatggaaaacctgtttgt	13	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43908875	A	A	43908875	3	1	54	1	0	0	0	0	1	0	0	0	8248	1290	45	4	5909	4	KIAA0467	1	43908875	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	256240	43908875	205341746	69	56663											
PTPRF	5792	broad.mit.edu	37	chr1	44069259	44069259	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagcaggagggcagcgccaGagcccagcccgtggtccttc	15	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44069259	T	T	44069259	1	4	54	0	1	0	0	0	0	0	0	0	12909	957	33	3		3	PTPRF	1	44069259	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	160384	44069259	205181362	70	56664											
SLC6A9	6536	broad.mit.edu	37	chr1	44466308	44466308	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaacctccctcagcctcccAaaggccagagtcatgggtat	8	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44466308	T	T	44466308	1	4	54	0	1	0	0	0	0	0	0	0	14805	145	5	5		5	SLC6A9	1	44466308	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	397049	44466308	204784313	71	56665											
TMEM53	79639	broad.mit.edu	37	chr1	45125889	45125889	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttggcaaggttcttgtccTtgcagccaccccagcccaag	9	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45125889	A	A	45125889	3	1	54	1	0	0	0	0	1	0	0	0	16302	1609	56	5	701	5	TMEM53	1	45125889	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	659581	45125889	204124732	72	56666											
EIF2B3	8891	broad.mit.edu	37	chr1	45316547	45316547	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttattgggaaataaatAcagagttaaacaggtgggcc	10	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45316547	G	G	45316547	1	3	54	0	1	0	0	0	0	0	0	0	5042	406	14	5		5	EIF2B3	1	45316547	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	190658	45316547	203934074	73	56667											
MKNK1	8569	broad.mit.edu	37	chr1	47042394	47042394	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccctttggcaggagtccTctgggagaatgcaaggccac	13	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47042394	A	A	47042394	1	1	54	0	1	0	0	0	0	0	0	0	9697	1566	54	5		5	MKNK1	1	47042394	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1725847	47042394	202208227	74	56668											
CYP4B1	1580	broad.mit.edu	37	chr1	47279642	47279642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgatgcagcagcgccttGtgtccttccagtaccataat	9	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47279642	T	T	47279642	3	4	54	1	0	0	0	0	1	0	0	0	4218	1377	48	3	704	3	CYP4B1	1	47279642	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	237248	47279642	201970979	75	56669											
CYP4X1	260293	broad.mit.edu	37	chr1	47489375	47489375	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcccgcgagtcagaagcttCgcgagggcccagagaggcgg	16	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47489375	T	T	47489375	1	4	54	0	1	0	0	0	0	0	0	0	4226	899	31	4		4	CYP4X1	1	47489375	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	209733	47489375	201761246	76	56670											
CYP4A22	284541	broad.mit.edu	37	chr1	47608041	47608041	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactctcaggtcattgctgtGagagtagagggttccccaga	12	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47608041	A	A	47608041	1	1	54	0	1	0	0	0	0	0	0	0	4217	1305	45	4		4	CYP4A22	1	47608041	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	118666	47608041	201642580	77	56671											
AGBL4	84871	broad.mit.edu	37	chr1	49304770	49304770	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgtaaattagtatagcTactatggaaaacagtaagga	10	3	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49304770	C	C	49304770	1	2	54	0	1	0	0	0	0	0	0	0	377	1537	53	5		5	AGBL4	1	49304770	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1696729	49304770	199945851	78	56672											
AGBL4	84871	broad.mit.edu	37	chr1	49332702	49332702	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaaaataaactgcctgtgGagcagagggtaggggaggag	18	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49332702	C	C	49332702	1	2	54	0	1	0	0	0	0	0	0	0	377	1189	41	4		4	AGBL4	1	49332702	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27932	49332702	199917919	79	56673											
AGBL4	84871	broad.mit.edu	37	chr1	49532640	49532640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcagcatcttctccgcaCcaacatctttctaagtagcg	5	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49532640	A	A	49532640	1	1	54	0	1	0	0	0	0	0	0	0	377	522	18	3		3	AGBL4	1	49532640	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	199938	49532640	199717981	80	56674											
AGBL4	84871	broad.mit.edu	37	chr1	49717161	49717161	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggatcctctcacaccattaGcaattactcttgcttgaggg	8	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49717161	C	C	49717161	1	2	54	0	1	0	0	0	0	0	0	0	377	986	34	4		4	AGBL4	1	49717161	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	184521	49717161	199533460	81	56675											
AGBL4	84871	broad.mit.edu	37	chr1	50031596	50031596	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggttccattctccccgtcActttcaggtacaccaattag	6	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50031596	T	T	50031596	1	4	54	0	1	0	0	0	0	0	0	0	377	174	6	5		5	AGBL4	1	50031596	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	314435	50031596	199219025	82	56676											
AGBL4	84871	broad.mit.edu	37	chr1	50307768	50307768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctgcatgcccgacctcCtgaagtccgcgccaagctcc	8	19	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50307768	A	A	50307768	1	1	54	0	1	0	0	0	0	0	0	0	377	696	24	2		2	AGBL4	1	50307768	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	276172	50307768	198942853	83	56677											
ELAVL4	1996	broad.mit.edu	37	chr1	50595074	50595074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgcagagtgcactgtggCagtgatctgaaatttcccag	12	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50595074	A	A	50595074	1	1	54	0	1	0	0	0	0	0	0	0	5094	725	25	3		3	ELAVL4	1	50595074	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	287306	50595074	198655547	84	56678											
OSBPL9	114883	broad.mit.edu	37	chr1	52183204	52183204	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catttcccagtggagaccttCtggtctgctgctttatcact	8	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52183204	G	G	52183204	1	3	54	0	1	0	0	0	0	0	0	0	11378	928	32	4		4	OSBPL9	1	52183204	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1588130	52183204	197067417	85	56679											
RAB3B	5865	broad.mit.edu	37	chr1	52398829	52398829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacaaagcccatatgtaCctcatacaaatataaaacaa	3	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52398829	A	A	52398829	1	1	54	0	1	0	0	0	0	0	0	0	13040	522	18	3		3	RAB3B	1	52398829	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	215625	52398829	196851792	86	56680											
C1orf83	127428	broad.mit.edu	37	chr1	54561087	54561087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtgtggtcaggattggGgaggggaatagctgaagatg	19	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54561087	T	T	54561087	1	4	54	0	1	0	0	0	0	0	0	0	2082	1247	43	2		2	C1orf83	1	54561087	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2162258	54561087	194689534	87	56681											
USP24	23358	broad.mit.edu	37	chr1	55589146	55589146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggctccgaagctgtaggCacgtaacaagaagagacaaa	12	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55589146	A	A	55589146	3	1	54	1	0	0	0	0	1	0	0	0	17181	710	25	3	3744	3	USP24	1	55589146	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1028059	55589146	193661475	88	56682											
PRKAA2	5563	broad.mit.edu	37	chr1	57139961	57139961	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatataaagatggtatatatGagtagagaagtttagggcac	12	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57139961	T	T	57139961	1	4	54	0	1	0	0	0	0	0	0	0	12600	1305	45	3		3	PRKAA2	1	57139961	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1550815	57139961	192110660	89	56683											
C1orf168	199920	broad.mit.edu	37	chr1	57221675	57221675	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtttggttacagatcatTagagactacaccaaaaggtg	10	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57221675	C	C	57221675	1	2	54	0	1	0	0	0	0	0	0	0	2032	1769	61	5		5	C1orf168	1	57221675	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	81714	57221675	192028946	90	56684											
C1orf168	199920	broad.mit.edu	37	chr1	57224483	57224483	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacccatttcttatagcacCcaggattaaagcagttataa	5	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57224483	G	G	57224483	1	3	54	0	1	0	0	0	0	0	0	0	2032	638	22	4		4	C1orf168	1	57224483	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2808	57224483	192026138	91	56685											
DAB1	1600	broad.mit.edu	37	chr1	57476525	57476525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcattgaaaatataagaCacctggatatactttcatgc	6	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57476525	A	A	57476525	1	1	54	0	1	0	0	0	0	0	0	0	4250	493	17	3		3	DAB1	1	57476525	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	252042	57476525	191774096	92	56686											
DAB1	1600	broad.mit.edu	37	chr1	57526783	57526783	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagaaaaactgctgtttcCctgaacagtacaacacagaa	9	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57526783	T	T	57526783	1	4	54	0	1	0	0	0	0	0	0	0	4250	638	22	4		4	DAB1	1	57526783	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	50258	57526783	191723838	93	56687											
DAB1	1600	broad.mit.edu	37	chr1	57536551	57536551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaaatttgctcctggagGggctggcagccctcaccctc	12	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57536551	T	T	57536551	1	4	54	0	1	0	0	0	0	0	0	0	4250	1247	43	2		2	DAB1	1	57536551	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9768	57536551	191714070	94	56688											
DAB1	1600	broad.mit.edu	37	chr1	57857937	57857937	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgtagtcccagcttctTgggaggctaaggcaggagaa	14	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57857937	G	G	57857937	1	3	54	0	1	0	0	0	0	0	0	0	4250	1827	63	5		5	DAB1	1	57857937	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	321386	57857937	191392684	95	56689											
DAB1	1600	broad.mit.edu	37	chr1	58199502	58199502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggaagagtcagcatgggGggaatccatgccctgatctc	15	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58199502	T	T	58199502	1	4	54	0	1	0	0	0	0	0	0	0	4250	1247	43	2		2	DAB1	1	58199502	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	341565	58199502	191051119	96	56690											
DAB1	1600	broad.mit.edu	37	chr1	58424574	58424574	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgacttcattttaattTgcttacctctgtcaagctct	4	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58424574	G	G	58424574	1	3	54	0	1	0	0	0	0	0	0	0	4250	1827	63	5		5	DAB1	1	58424574	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	225072	58424574	190826047	97	56691											
HOOK1	51361	broad.mit.edu	37	chr1	60328496	60328496	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagaattgcagcagcagattGaggacctccagaaatcttta	10	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60328496	C	C	60328496	3	2	54	1	0	0	0	0	1	0	0	0	7349	1291	45	4	1635	4	HOOK1	1	60328496	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1903922	60328496	188922125	98	56692											
C1orf87	127795	broad.mit.edu	37	chr1	60496016	60496016	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttccagttatagaaaacActaaatatgaaaacagaacc	5	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60496016	T	T	60496016	1	4	54	0	1	0	0	0	0	0	0	0	2086	174	6	5		5	C1orf87	1	60496016	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	167520	60496016	188754605	99	56693											
NFIA	4774	broad.mit.edu	37	chr1	61857768	61857768	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctttaaggagcatggaaCagagaagcaagagggcttgt	13	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61857768	T	T	61857768	1	4	54	0	1	0	0	0	0	0	0	0	10465	493	17	4		4	NFIA	1	61857768	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1361752	61857768	187392853	100	56694											
KANK4	163782	broad.mit.edu	37	chr1	62747122	62747122	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtttgagggatatctccTgcaggcctttcctaggctat	10	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62747122	A	A	62747122	1	1	54	0	1	0	0	0	0	0	0	0	8049	1595	55	5		5	KANK4	1	62747122	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	889354	62747122	186503499	101	56695											
KANK4	163782	broad.mit.edu	37	chr1	62756859	62756859	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttccccaatgactaattgTgttgactatctttttcatgt	5	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62756859	G	G	62756859	1	3	54	0	1	0	0	0	0	0	0	0	8049	1711	59	5		5	KANK4	1	62756859	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	9737	62756859	186493762	102	56696											
CACHD1	57685	broad.mit.edu	37	chr1	65016370	65016371	+	Intron	INS	-	TC	TC													tgagtacttgacactccctgINStctttgtcttgcttttagat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	65016371	TC	TC	65016370	6	5	54	0	1	1	1	0	0	0	0	0	2563	1392	48	0		0	CACHD1	1	65016370	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	2259511	65016370	184234251	103	56697											
JAK1	3716	broad.mit.edu	37	chr1	65323511	65323511	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctcacaccaaacaggaCtttgaacctctgggctatcc	8	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65323511	T	T	65323511	1	4	54	0	1	0	0	0	0	0	0	0	8007	580	20	4		4	JAK1	1	65323511	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	307141	65323511	183927110	104	56698											
DNAJC6	9829	broad.mit.edu	37	chr1	65860522	65860522	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaggaagtgacaattctGtgacatttagtgaatgaact	9	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65860522	A	A	65860522	1	1	54	0	1	0	0	0	0	0	0	0	4693	1392	48	4		4	DNAJC6	1	65860522	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	537011	65860522	183390099	105	56699											
DNAJC6	9829	broad.mit.edu	37	chr1	65874456	65874456	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccaaggaaatggatcctgAgaaattaaaggtgagtgagg	15	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65874456	T	T	65874456	3	4	54	1	0	0	0	0	1	0	0	0	4693	304	11	5	2519	5	DNAJC6	1	65874456	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	13934	65874456	183376165	106	56700											
LEPR	3953	broad.mit.edu	37	chr1	65971062	65971062	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatgcatactctttcctctGtctgatccctatgctgtctg	6	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65971062	C	C	65971062	1	2	54	0	1	0	0	0	0	0	0	0	8800	1392	48	4		4	LEPR	1	65971062	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96606	65971062	183279559	107	56701											
LEPR	3953	broad.mit.edu	37	chr1	66058460	66058460	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgtgccaacagccaaactCaacgacactctccttatgtg	6	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66058460	G	G	66058460	2	3	54	1	0	0	0	0	0	0	0	1	8800	813	29	4		4	LEPR	1	66058460	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87398	66058460	183192161	108	56702											
PDE4B	5142	broad.mit.edu	37	chr1	66289030	66289030	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaagttgcagtgagccaaGatcgcaccattgtactacag	10	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66289030	T	T	66289030	1	4	54	0	1	0	0	0	0	0	0	0	11734	957	33	3		3	PDE4B	1	66289030	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	230570	66289030	182961591	109	56703											
PDE4B	5142	broad.mit.edu	37	chr1	66346582	66346582	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttcttacctctctttctCcttcctaggccacagtgttt	4	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66346582	T	T	66346582	1	4	54	0	1	0	0	0	0	0	0	0	11734	870	30	4		4	PDE4B	1	66346582	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	57552	66346582	182904039	110	56704											
PDE4B	5142	broad.mit.edu	37	chr1	66829204	66829204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacaacagcctgcacgctGctgatgtagcccagtcgacc	9	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66829204	T	T	66829204	3	4	54	1	0	0	0	0	1	0	0	0	11734	1319	46	3	1634	3	PDE4B	1	66829204	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	482622	66829204	182421417	111	56705											
SGIP1	84251	broad.mit.edu	37	chr1	67124545	67124545	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggaacaatttattttggcAggcgaatctgggaaaggtct	13	5	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67124545	G	G	67124545	1	3	54	0	1	0	0	0	0	0	0	0	14319	203	7	5		5	SGIP1	1	67124545	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	295341	67124545	182126076	112	56706											
SGIP1	84251	broad.mit.edu	37	chr1	67153131	67153131	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcctgtcaaaacatacctTttttttttaagagaagacta	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67153131	C	C	67153131	1	2	54	0	1	0	0	0	0	0	0	0	14319	1856	64	5		5	SGIP1	1	67153131	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	28586	67153131	182097490	113	56707											
SGIP1	84251	broad.mit.edu	37	chr1	67185075	67185075	+	Frame_Shift_Del	DEL	G	-	-													tcaatgcctatttcaaaggaGcagacccaagcaagtaagcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67185075	-	-	67185075	7	5	54	1	0	1	0	1	0	0	0	0	14319	971	34	0	1803	0	SGIP1	1	67185075	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	31944	67185075	182065546	114	56708											
SGIP1	84251	broad.mit.edu	37	chr1	67196097	67196097	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgcagtgaatgagctgaAagaagtcttcttgacagctt	10	6	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67196097	G	G	67196097	1	3	54	0	1	0	0	0	0	0	0	0	14319	29	1	5		5	SGIP1	1	67196097	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	11022	67196097	182054524	115	56709											
WDR78	79819	broad.mit.edu	37	chr1	67340311	67340311	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatggcacttatataacttTgtatataattttgtagggaa	7	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67340311	A	A	67340311	1	1	54	0	1	0	0	0	0	0	0	0	17455	1827	63	5		5	WDR78	1	67340311	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	144214	67340311	181910310	116	56710											
SLC35D1	23169	broad.mit.edu	37	chr1	67470088	67470088	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgactgtttgctcagctgctCttcagtgaaagtgatatagg	11	7	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67470088	A	A	67470088	4	1	54	1	0	0	0	0	0	1	0	0	14695	922	32	3	68	3	SLC35D1	1	67470088	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	129777	67470088	181780533	117	56711											
LRRC7	57554	broad.mit.edu	37	chr1	70239413	70239413	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttactgatcatctgctctGtgctaatcacttcatatgca	6	10	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70239413	T	T	70239413	1	4	54	0	1	0	0	0	0	0	0	0	9107	1392	48	3		3	LRRC7	1	70239413	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2769325	70239413	179011208	118	56712											
LRRC7	57554	broad.mit.edu	37	chr1	70429784	70429784	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttactcatcatattttaCaaaacaaagatcaggctctt	3	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70429784	G	G	70429784	1	3	54	0	1	0	0	0	0	0	0	0	9107	493	17	4		4	LRRC7	1	70429784	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	190371	70429784	178820837	119	56713											
LRRC7	57554	broad.mit.edu	37	chr1	70504333	70504333	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattccaatcccaacaggagTcttagtaatgtcttttctca	6	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70504333	A	A	70504333	3	1	54	1	0	0	0	0	1	0	0	0	9107	1664	58	5	2786	5	LRRC7	1	70504333	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	74549	70504333	178746288	120	56714											
LRRC7	57554	broad.mit.edu	37	chr1	70587567	70587567	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcaacgtgagcttactgtCtaaatattttttataaatag	5	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70587567	A	A	70587567	2	1	54	1	0	0	0	0	0	0	0	1	9107	900	32	3		3	LRRC7	1	70587567	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	83234	70587567	178663054	121	56715											
PTGER3	5733	broad.mit.edu	37	chr1	71331519	71331519	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgggaagaagaggagcctGaagagaagagcagagatgac	18	4	0	7			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71331519	T	T	71331519	1	4	54	0	1	0	0	0	0	0	0	0	12850	1305	45	3		3	PTGER3	1	71331519	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	743952	71331519	177919102	122	56716											
PTGER3	5733	broad.mit.edu	37	chr1	71440183	71440183	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgatcaatatggatgtttTagatattaccttcctaggac	7	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71440183	C	C	71440183	1	2	54	0	1	0	0	0	0	0	0	0	12850	1769	61	5		5	PTGER3	1	71440183	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	108664	71440183	177810438	123	56717											
PTGER3	5733	broad.mit.edu	37	chr1	71478259	71478259	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacatagttggttttcaatAaattggttgttggattgaaa	10	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71478259	T	T	71478259	1	4	54	0	1	0	0	0	0	0	0	0	12850	377	13	5		5	PTGER3	1	71478259	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	38076	71478259	177772362	124	56718											
ZRANB2	9406	broad.mit.edu	37	chr1	71546703	71546704	+	5'UTR	DNP	CC	AA	AA													aacgccaccagcacagccacCcgcagctatgtcttcacagg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	71546704	AA	AA	71546703	1	1	54	0	1	0	0	0	0	0	0	0	18352	638	22	2		2	ZRANB2	1	71546703	5'UTR	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	68444	71546703	177703918	125	56719											
NEGR1	257194	broad.mit.edu	37	chr1	72204031	72204032	+	Intron	DNP	CC	AA	AA													ataagcaacaagaaacatccCcagtgacaactgcaaataaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72204032	AA	AA	72204031	1	1	54	0	1	0	0	0	0	0	0	0	10412	638	22	2		2	NEGR1	1	72204031	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	657328	72204031	177046590	126	56720											
TNNI3K	51086	broad.mit.edu	37	chr1	74808830	74808830	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaacagaaagtctgactaAggaaaacatcttcagtgaaa	9	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74808830	T	T	74808830	3	4	54	1	0	0	0	0	1	0	0	0	16452	72	3	5	1288	5	TNNI3K	1	74808830	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2604799	74808830	174441791	127	56721											
TNNI3K	51086	broad.mit.edu	37	chr1	74833589	74833589	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctattatataatttaatttcTagatggctcctatgtgtctg	6	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74833589	A	A	74833589	1	1	54	0	1	0	0	0	0	0	0	0	16452	1537	53	5		5	TNNI3K	1	74833589	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	24759	74833589	174417032	128	56722											
TNNI3K	51086	broad.mit.edu	37	chr1	75009443	75009443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcattgtaaatgttgcttGtgctttgcaactactcacca	6	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75009443	T	T	75009443	1	4	54	0	1	0	0	0	0	0	0	0	16452	1392	48	3		3	TNNI3K	1	75009443	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	175854	75009443	174241178	129	56723											
C1orf173	127254	broad.mit.edu	37	chr1	75102279	75102279	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccattatacatacccttatGacccaaagtatttgttaaaa	3	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75102279	T	T	75102279	1	4	54	0	1	0	0	0	0	0	0	0	2034	1305	45	3		3	C1orf173	1	75102279	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	92836	75102279	174148342	130	56724											
C1orf173	127254	broad.mit.edu	37	chr1	75114991	75114991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccataaggctattatatgcaGcaagtaacctaaaatacaaa	5	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75114991	T	T	75114991	3	4	54	1	0	0	0	0	1	0	0	0	2034	971	34	3	4612	3	C1orf173	1	75114991	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12712	75114991	174135630	131	56725											
MSH4	4438	broad.mit.edu	37	chr1	76349377	76349378	+	Missense_Mutation	DNP	GA	TT	TT													ttcttgaaaaaatatctgcgGaaaaacctattgccaacaat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	76349378	TT	TT	76349377	3	4	54	1	0	0	0	0	1	0	0	0	9966	1175	41	3	2036	3	MSH4	1	76349377	Missense_Mutation	DNP	GA	TCGA-17-Z022-01A-01W-0746-08	1234386	76349377	172901244	132	56726											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76779709	76779709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcccagagggttacctagCagttggagagtatccatggt	13	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76779709	A	A	76779709	1	1	54	0	1	0	0	0	0	0	0	0	15343	725	25	3		3	ST6GALNAC3	1	76779709	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	430332	76779709	172470912	133	56727											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77012311	77012311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcagtgaatacacctggGgaaagagaatccaaacacag	11	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77012311	T	T	77012311	1	4	54	0	1	0	0	0	0	0	0	0	15343	1247	43	2		2	ST6GALNAC3	1	77012311	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	232602	77012311	172238310	134	56728											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77378185	77378185	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttaactttctgtctcgttGatctgtctaatgttacagtg	8	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77378185	T	T	77378185	1	4	54	0	1	0	0	0	0	0	0	0	15345	1305	45	3		3	ST6GALNAC5	1	77378185	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	365874	77378185	171872436	135	56729											
AK5	26289	broad.mit.edu	37	chr1	77985439	77985439	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtaaactgtcatggcgctGatgggagtgtagcagtgatg	15	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77985439	T	T	77985439	1	4	54	0	1	0	0	0	0	0	0	0	443	1305	45	3		3	AK5	1	77985439	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	607254	77985439	171265182	136	56730											
FUBP1	8880	broad.mit.edu	37	chr1	78432681	78432681	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttttttggttgaaagattCtaaagtatgttttgatcatg	8	2	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78432681	A	A	78432681	1	1	54	0	1	0	0	0	0	0	0	0	6152	928	32	3		3	FUBP1	1	78432681	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	447242	78432681	170817940	137	56731											
DNAJB4	11080	broad.mit.edu	37	chr1	78478905	78478905	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctgaagaaatggaaataGatggtgatccttttagtgcc	10	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78478905	T	T	78478905	3	4	54	1	0	0	0	0	1	0	0	0	4662	942	33	3	388	3	DNAJB4	1	78478905	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46224	78478905	170771716	138	56732											
GIPC2	54810	broad.mit.edu	37	chr1	78548267	78548267	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtttcacaaacgtgtgtgGatttttaaaatcttagcctc	7	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78548267	A	A	78548267	1	1	54	0	1	0	0	0	0	0	0	0	6457	1189	41	4		4	GIPC2	1	78548267	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	69362	78548267	170702354	139	56733											
IFI44L	10964	broad.mit.edu	37	chr1	79107493	79107493	+	Nonstop_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcgttacagccctgcatttGagataagttgccttgattct	9	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79107493	T	T	79107493	4	4	54	1	0	0	0	0	0	0	0	0	7588	1285	45	3	1388	3	IFI44L	1	79107493	Nonstop_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	559226	79107493	170143128	140	56734											
LPHN2	23266	broad.mit.edu	37	chr1	81820213	81820213	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgcatgtttcttctcatCatgttatcccctcccaaaat	4	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81820213	A	A	81820213	1	1	54	0	1	0	0	0	0	0	0	0	9003	841	29	3		3	LPHN2	1	81820213	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2712720	81820213	167430408	141	56735											
MCOLN2	255231	broad.mit.edu	37	chr1	85462473	85462474	+	Intron	DNP	CC	AA	AA													tgaaagatgaagcccagactCctcacctgacggttaacctg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	85462474	AA	AA	85462473	1	1	54	0	1	0	0	0	0	0	0	0	9489	870	30	3		3	MCOLN2	1	85462473	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	3642260	85462473	163788148	142	56736											
MCOLN3	55283	broad.mit.edu	37	chr1	85506817	85506817	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctatagtattctcttccTtgaaagctaccaccatctgg	6	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85506817	A	A	85506817	3	1	54	1	0	0	0	0	1	0	0	0	9490	1609	56	5	1433	5	MCOLN3	1	85506817	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	44344	85506817	163743804	143	56737											
CLCA2	9635	broad.mit.edu	37	chr1	86904742	86904742	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcccaccactgtatcaGctaaaacagacatcagcatt	5	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86904742	T	T	86904742	3	4	54	1	0	0	0	0	1	0	0	0	3489	971	34	3	1182	3	CLCA2	1	86904742	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1397925	86904742	162345879	144	56738											
CLCA4	22802	broad.mit.edu	37	chr1	87021258	87021258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggcctgtttttataccaGtaccatgctctttgggttac	8	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87021258	T	T	87021258	1	4	54	0	1	0	0	0	0	0	0	0	3490	1044	36	3		3	CLCA4	1	87021258	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	116516	87021258	162229363	145	56739											
SH3GLB1	51100	broad.mit.edu	37	chr1	87212179	87212179	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agataagatgaagtggctttTacctcatgtgagtctcaaac	9	7	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87212179	C	C	87212179	1	2	54	0	1	0	0	0	0	0	0	0	14366	1769	61	5		5	SH3GLB1	1	87212179	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	190921	87212179	162038442	146	56740											
GBP4	115361	broad.mit.edu	37	chr1	89660907	89660907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtttacagagatatgtaCagaagttgaagggagctgaa	13	3	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89660907	A	A	89660907	1	1	54	0	1	0	0	0	0	0	0	0	6338	493	17	3		3	GBP4	1	89660907	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2448728	89660907	159589714	147	56741											
LRRC8C	84230	broad.mit.edu	37	chr1	90128787	90128787	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatccagtctatcattgatgGgcatttgggttggttctaag	11	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90128787	A	A	90128787	1	1	54	0	1	0	0	0	0	0	0	0	9110	1247	43	4		4	LRRC8C	1	90128787	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	467880	90128787	159121834	148	56742											
LRRC8D	55144	broad.mit.edu	37	chr1	90369887	90369887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaccttcaggctctttttGgagttaatggagcatcctgt	11	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90369887	T	T	90369887	1	4	54	0	1	0	0	0	0	0	0	0	9111	1363	47	2		2	LRRC8D	1	90369887	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	241100	90369887	158880734	149	56743											
TMED5	50999	broad.mit.edu	37	chr1	93625730	93625730	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaaaaactaaggttttGccttctggagaggcaagatg	11	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93625730	A	A	93625730	2	1	54	1	0	0	0	0	0	0	0	1	16130	1306	46	4		4	TMED5	1	93625730	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3255843	93625730	155624891	150	56744											
ABCA4	24	broad.mit.edu	37	chr1	94545887	94545887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttctgcaaggggaagtGgactttctgggagaagtctc	13	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94545887	T	T	94545887	1	4	54	0	1	0	0	0	0	0	0	0	34	1363	47	2		2	ABCA4	1	94545887	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	920157	94545887	154704734	151	56745											
ABCA4	24	broad.mit.edu	37	chr1	94574175	94574175	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggagggtgtccatgaattGggacaagatgtgtagctctg	15	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94574175	C	C	94574175	3	2	54	1	0	0	0	0	1	0	0	0	34	1357	47	4	6609	4	ABCA4	1	94574175	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28288	94574175	154676446	152	56746											
DPH5	51611	broad.mit.edu	37	chr1	101458158	101458158	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctaaatgtagtaacagagGaataatatgagagcccttct	8	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101458158	A	A	101458158	1	1	54	0	1	0	0	0	0	0	0	0	4763	1189	41	4		4	DPH5	1	101458158	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6883983	101458158	147792463	153	56747											
COL11A1	1301	broad.mit.edu	37	chr1	103343530	103343530	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaatgggttggtggcaCcaaggtatattttctgttga	11	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103343530	A	A	103343530	1	1	54	0	1	0	0	0	0	0	0	0	3699	522	18	3		3	COL11A1	1	103343530	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1885372	103343530	145907091	154	56748											
COL11A1	1301	broad.mit.edu	37	chr1	103343664	103343664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgacatcaacaataggtaCttgatcaatttttggtgtat	7	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103343664	A	A	103343664	3	1	54	1	0	0	0	0	1	0	0	0	3699	565	20	3	92	3	COL11A1	1	103343664	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	134	103343664	145906957	155	56749											
COL11A1	1301	broad.mit.edu	37	chr1	103345291	103345291	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattattgtcataggacatcTcctcatcatttgatcccagg	7	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103345291	C	C	103345291	3	2	54	1	0	0	0	0	1	0	0	0	3699	1551	54	5	206	5	COL11A1	1	103345291	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1627	103345291	145905330	156	56750											
COL11A1	1301	broad.mit.edu	37	chr1	103491708	103491708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtttgaggaacagtcaaCataaggaaccacaggatgac	10	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103491708	A	A	103491708	1	1	54	0	1	0	0	0	0	0	0	0	3699	493	17	3		3	COL11A1	1	103491708	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	146417	103491708	145758913	157	56751											
NTNG1	22854	broad.mit.edu	37	chr1	107761410	107761410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatataggaccccagtcCcttctagcttgtagggtttc	9	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107761410	A	A	107761410	1	1	54	0	1	0	0	0	0	0	0	0	10799	638	22	2		2	NTNG1	1	107761410	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4269702	107761410	141489211	158	56752											
NTNG1	22854	broad.mit.edu	37	chr1	107851590	107851590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatcaccatcattttcacCgtcttccagacattacacgt	3	14	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107851590	A	A	107851590	1	1	54	0	1	0	0	0	0	0	0	0	10799	667	23	1		1	NTNG1	1	107851590	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	90180	107851590	141399031	159	56753											
NTNG1	22854	broad.mit.edu	37	chr1	108003041	108003041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggcaggacagattttaCactttgggaaaactttggca	10	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108003041	A	A	108003041	1	1	54	0	1	0	0	0	0	0	0	0	10799	493	17	3		3	NTNG1	1	108003041	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	151451	108003041	141247580	160	56754											
VAV3	10451	broad.mit.edu	37	chr1	108366400	108366400	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccctgatctgacaggattAgtgtccttataagaagagaa	11	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108366400	G	G	108366400	1	3	54	0	1	0	0	0	0	0	0	0	17260	435	15	5		5	VAV3	1	108366400	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	363359	108366400	140884221	161	56755											
SLC25A24	29957	broad.mit.edu	37	chr1	108697721	108697721	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccatctgtcgaaagccacCaaatatgttcattttgtctg	6	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108697721	G	G	108697721	3	3	54	1	0	0	0	0	1	0	0	0	14601	594	21	4	747	4	SLC25A24	1	108697721	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	331321	108697721	140552900	162	56756											
SLC25A24	29957	broad.mit.edu	37	chr1	108700237	108700237	+	Frame_Shift_Del	DEL	A	-	-													gttaagctatcccctatgtcAattccctgtaaaaatgaaaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108700237	-	-	108700237	7	5	54	1	0	1	0	1	0	0	0	0	14601	126	5	0	941	0	SLC25A24	1	108700237	Frame_Shift_Del	DEL	A	TCGA-17-Z022-01A-01W-0746-08	2516	108700237	140550384	163	56757											
C1orf194	127003	broad.mit.edu	37	chr1	109650806	109650806	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaatctcactctgtcatAgaagctggagtgcagtggcg	12	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109650806	G	G	109650806	1	3	54	0	1	0	0	0	0	0	0	0	2045	435	15	5		5	C1orf194	1	109650806	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	950569	109650806	139599815	164	56758											
CD53	963	broad.mit.edu	37	chr1	111434104	111434104	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcttttgggtaagtgtatCtcttctgagcacggtttagc	11	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111434104	G	G	111434104	1	3	54	0	1	0	0	0	0	0	0	0	3053	928	32	4		4	CD53	1	111434104	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1783298	111434104	137816517	165	56759											
CD53	963	broad.mit.edu	37	chr1	111434203	111434203	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgcatgcgtgtttgggtCatgtccagcacaaccatcct	9	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111434203	T	T	111434203	1	4	54	0	1	0	0	0	0	0	0	0	3053	841	29	4		4	CD53	1	111434203	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	99	111434203	137816418	166	56760											
ATP5F1	515	broad.mit.edu	37	chr1	111992462	111992462	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgtctatctgcagcccCctctctgaagaatgcagcct	8	15	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111992462	T	T	111992462	3	4	54	1	0	0	0	0	1	0	0	0	1156	623	22	4	50	4	ATP5F1	1	111992462	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	558259	111992462	137258159	167	56761											
RAP1A	5906	broad.mit.edu	37	chr1	112191257	112191257	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgttctacaaactggccttCacatttctcactgagtccag	6	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112191257	T	T	112191257	1	4	54	0	1	0	0	0	0	0	0	0	13143	841	29	4		4	RAP1A	1	112191257	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	198795	112191257	137059364	168	56762											
KCND3	3752	broad.mit.edu	37	chr1	112436570	112436570	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtccatgcccccatcactCagacactgcacttggccttc	7	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112436570	G	G	112436570	1	3	54	0	1	0	0	0	0	0	0	0	8090	841	29	4		4	KCND3	1	112436570	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	245313	112436570	136814051	169	56763											
SLC16A1	6566	broad.mit.edu	37	chr1	113456553	113456554	+	Frame_Shift_Del	DEL	TC	-	-													ccttgggccctccatctgtgTctttctggtccggagattct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113456554	-	-	113456553	7	5	54	1	0	1	0	1	0	0	0	0	14515	1667	58	0	43	0	SLC16A1	1	113456553	Frame_Shift_Del	DEL	TC	TCGA-17-Z022-01A-01W-0746-08	1019983	113456553	135794068	170	56764											
MAGI3	260425	broad.mit.edu	37	chr1	114137054	114137054	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctttacttttgaaataatTttctcctcctttattttact	1	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114137054	C	C	114137054	1	2	54	0	1	0	0	0	0	0	0	0	9284	1856	64	5		5	MAGI3	1	114137054	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	680501	114137054	135113567	171	56765											
HIPK1	204851	broad.mit.edu	37	chr1	114505838	114505838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggcatttgactttgtggGccaatgccatacaaagttga	10	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114505838	T	T	114505838	1	4	54	0	1	0	0	0	0	0	0	0	7183	1218	42	3		3	HIPK1	1	114505838	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	368784	114505838	134744783	172	56766											
TRIM33	51592	broad.mit.edu	37	chr1	114940381	114940381	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcctcttcctgctcaaaCtctggcaaaggtgcgaaggt	9	12	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114940381	G	G	114940381	3	3	54	1	0	0	0	0	1	0	0	0	16631	564	20	4	114	4	TRIM33	1	114940381	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	434543	114940381	134310240	173	56767											
CSDE1	7812	broad.mit.edu	37	chr1	115260765	115260765	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaacttgatcatagtggaTtaatggtgtgctttgtggat	11	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115260765	G	G	115260765	1	3	54	0	1	0	0	0	0	0	0	0	3963	1508	52	5		5	CSDE1	1	115260765	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	320384	115260765	133989856	174	56768											
CSDE1	7812	broad.mit.edu	37	chr1	115276832	115276832	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttgtaaaattatactgTagtcacaataatataatttg	4	3	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115276832	C	C	115276832	1	2	54	0	1	0	0	0	0	0	0	0	3963	1653	57	5		5	CSDE1	1	115276832	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	16067	115276832	133973789	175	56769											
SYCP1	6847	broad.mit.edu	37	chr1	115523919	115523919	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaataattaatgtgacatTtagtgatggttttattcatt	6	2	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115523919	G	G	115523919	1	3	54	0	1	0	0	0	0	0	0	0	15550	1856	64	5		5	SYCP1	1	115523919	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	247087	115523919	133726702	176	56770											
NOTCH2	4853	broad.mit.edu	37	chr1	120505536	120505536	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attccacatccccccagaaaGgagcagcatgtcctcacgac	7	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120505536	A	A	120505536	1	1	54	0	1	0	0	0	0	0	0	0	10643	1015	35	4		4	NOTCH2	1	120505536	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4981617	120505536	128745085	177	56771											
NBPF9	400818	broad.mit.edu	37	chr1	144189448	144189448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattggacccaggcagacGtaaaaaattcacagaactat	7	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144189448	T	T	144189448	1	4	54	0	1	0	0	0	0	0	0	0	10294	1160	40	3		3	NBPF9	1	144189448	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23683912	144189448	105061173	178	56772											
NBPF9	400818	broad.mit.edu	37	chr1	144814395	144814395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagagtgaggaactgaaaGgatgtctttttgaaatggaa	13	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144814395	A	A	144814395	1	1	54	0	1	0	0	0	0	0	0	0	10294	1015	35	4		4	NBPF9	1	144814395	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	624947	144814395	104436226	179	56773											
PDE4DIP	9659	broad.mit.edu	37	chr1	144865689	144865689	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagctgtgagtttgggttggTggatctgagtagctctgtta	15	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144865689	A	A	144865689	1	1	54	0	1	0	0	0	0	0	0	0	11737	1711	59	5		5	PDE4DIP	1	144865689	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	51294	144865689	104384932	180	56774											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879653	144879653	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggcaggtttggtcatgagGacaataattactagggaaaa	13	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144879653	A	A	144879653	1	1	54	0	1	0	0	0	0	0	0	0	11737	1189	41	4		4	PDE4DIP	1	144879653	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13964	144879653	104370968	181	56775											
PDE4DIP	9659	broad.mit.edu	37	chr1	144882509	144882509	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggggtctggggaaaggcctCacagtcacattcccctcctc	11	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144882509	G	G	144882509	2	3	54	1	0	0	0	0	0	0	0	1	11737	813	29	4		4	PDE4DIP	1	144882509	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2856	144882509	104368112	182	56776											
PDE4DIP	9659	broad.mit.edu	37	chr1	145024189	145024189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcaatacatatcagccCtaccagacacctcacccttc	3	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145024189	A	A	145024189	1	1	54	0	1	0	0	0	0	0	0	0	11737	696	24	2		2	PDE4DIP	1	145024189	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	141680	145024189	104226432	183	56777											
PDE4DIP	9659	broad.mit.edu	37	chr1	145034628	145034628	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggctgaggcaggagaatCccttgaacctgagaggcgga	17	8	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145034628	A	A	145034628	1	1	54	0	1	0	0	0	0	0	0	0	11737	870	30	3		3	PDE4DIP	1	145034628	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10439	145034628	104215993	184	56778											
NBPF9	400818	broad.mit.edu	37	chr1	145103501	145103501	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttgtggaaggttctgctGgatattccaacataaaaatg	9	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145103501	A	A	145103501	1	1	54	0	1	0	0	0	0	0	0	0	10294	1363	47	4		4	NBPF9	1	145103501	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	68873	145103501	104147120	185	56779											
NBPF9	400818	broad.mit.edu	37	chr1	145172083	145172083	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtaggcaactacagcatcaGagtgggtaagtatccagacc	11	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145172083	T	T	145172083	1	4	54	0	1	0	0	0	0	0	0	0	10294	957	33	3		3	NBPF9	1	145172083	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	68582	145172083	104078538	186	56780											
NBPF10	100132406	broad.mit.edu	37	chr1	145209118	145209118	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggacacacgaggctgcttCgctgcacacccgagaaagtt	11	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145209118	T	T	145209118	1	4	54	0	1	0	0	0	0	0	0	0	10287	899	31	4		4	NBPF10	1	145209118	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37035	145209118	104041503	187	56781											
ITGA10	8515	broad.mit.edu	37	chr1	145534113	145534113	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaccctccaaggaacacttCagccagaacccccccaggat	7	17	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145534113	T	T	145534113	4	4	54	1	0	0	0	0	0	1	0	0	7943	827	29	4	1672	4	ITGA10	1	145534113	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	324995	145534113	103716508	188	56782											
ITGA10	8515	broad.mit.edu	37	chr1	145534244	145534244	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagggagcactgtacctGtaccatggaacccagagtgg	12	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145534244	T	T	145534244	2	4	54	1	0	0	0	0	0	0	0	1	7943	1364	48	3		3	ITGA10	1	145534244	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	131	145534244	103716377	189	56783											
ITGA10	8515	broad.mit.edu	37	chr1	145538813	145538813	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaaccactctcagggtgaGaagctggaggggtcttggca	14	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145538813	C	C	145538813	1	2	54	0	1	0	0	0	0	0	0	0	7943	957	33	4		4	ITGA10	1	145538813	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4569	145538813	103711808	190	56784											
NBPF10	100132406	broad.mit.edu	37	chr1	145663406	145663406	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttctttttaaggtagtttCaatgaaggacaaattggtat	9	3	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145663406	A	A	145663406	1	1	54	0	1	0	0	0	0	0	0	0	10287	841	29	3		3	NBPF10	1	145663406	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	124593	145663406	103587215	191	56785											
PDZK1	5174	broad.mit.edu	37	chr1	145752463	145752463	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatgactgatattacacctCaaggtgtggctatgagagct	10	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145752463	T	T	145752463	4	4	54	1	0	0	0	0	0	1	0	0	11801	827	29	4	506	4	PDZK1	1	145752463	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	89057	145752463	103498158	192	56786											
GJA5	2702	broad.mit.edu	37	chr1	147236222	147236222	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacccaccatgcccggcccaGtgctccttcttgtggtcccc	9	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147236222	C	C	147236222	1	2	54	0	1	0	0	0	0	0	0	0	6468	1044	36	4		4	GJA5	1	147236222	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1483759	147236222	102014399	193	56787											
LOC200030	200030	broad.mit.edu	37	chr1	147966803	147966803	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttctttctttgttcctttCtttctttcttctttctttct	1	11	8	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147966803	T	T	147966803	1	4	54	0	1	0	0	0	0	0	0	0	8950	928	32	4		4	LOC200030	1	147966803	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	730581	147966803	101283818	194	56788											
NBPF14	25832	broad.mit.edu	37	chr1	148015798	148015798	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagctctctgctgagcCtggaaaagtgggaaaaagta	12	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148015798	A	A	148015798	5	1	54	1	0	0	0	0	0	0	1	0	10289	695	24	2	1992	2	NBPF14	1	148015798	Splice_Site	SNP	C	TCGA-17-Z022-01A-01W-0746-08	48995	148015798	101234823	195	56789											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858235	149858235	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagccaagaaaagaagtaaGagaatgggcgggcctgattc	13	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149858235	C	C	149858235	1	2	54	0	1	0	0	0	0	0	0	0	7245	957	33	4		4	HIST2H2AC	1	149858235	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1842437	149858235	99392386	196	56790											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858524	149858524	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtttaaccttgatttcagtCatgtctggtcgtggcaaaca	9	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149858524	T	T	149858524	1	4	54	0	1	0	0	0	0	0	0	0	7245	841	29	4		4	HIST2H2AC	1	149858524	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	289	149858524	99392097	197	56791											
SV2A	9900	broad.mit.edu	37	chr1	149882165	149882165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctgcgtggtcagagccCcaatggcaaacacagaagga	13	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149882165	A	A	149882165	3	1	54	1	0	0	0	0	1	0	0	0	15535	623	22	2	1218	2	SV2A	1	149882165	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	23641	149882165	99368456	198	56792											
SV2A	9900	broad.mit.edu	37	chr1	149882375	149882375	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggatttccgggggctgctCaccatagtgggggatgatgg	18	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149882375	T	T	149882375	1	4	54	0	1	0	0	0	0	0	0	0	15535	841	29	4		4	SV2A	1	149882375	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	210	149882375	99368246	199	56793											
PLEKHO1	51177	broad.mit.edu	37	chr1	150130956	150130956	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttgcatcttttaggcagtCattccgaaaatccctcctga	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150130956	G	G	150130956	1	3	54	0	1	0	0	0	0	0	0	0	12179	841	29	4		4	PLEKHO1	1	150130956	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	248581	150130956	99119665	200	56794											
CA14	23632	broad.mit.edu	37	chr1	150234529	150234529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatccacatgcctccacCaatccgagtttgctcttttc	5	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150234529	A	A	150234529	1	1	54	0	1	0	0	0	0	0	0	0	2541	609	21	2		2	CA14	1	150234529	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	103573	150234529	99016092	201	56795											
CA14	23632	broad.mit.edu	37	chr1	150235522	150235522	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacttccgctacaatggctCgctcacaactcccccttgct	6	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150235522	A	A	150235522	4	1	54	1	0	0	0	0	0	1	0	0	2541	893	31	3	670	3	CA14	1	150235522	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	993	150235522	99015099	202	56796											
SETDB1	9869	broad.mit.edu	37	chr1	150914936	150914936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatctcaaaaaaaaaaaaaAaattaccccactttccctaa	0	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150914936	G	G	150914936	1	3	54	0	1	0	0	0	0	0	0	0	14251	29	1	5		5	SETDB1	1	150914936	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	679414	150914936	98335685	203	56797											
SETDB1	9869	broad.mit.edu	37	chr1	150923357	150923357	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatatgttcttgtggaccgAaagtttcagccctataagcc	8	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150923357	T	T	150923357	2	4	54	1	0	0	0	0	0	0	0	1	14251	233	9	5		5	SETDB1	1	150923357	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	8421	150923357	98327264	204	56798											
SCNM1	79005	broad.mit.edu	37	chr1	151140399	151140399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtaattctacttgaagAataacagttttaaaaactat	4	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151140399	T	T	151140399	1	4	54	0	1	0	0	0	0	0	0	0	14039	261	9	5		5	SCNM1	1	151140399	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	217042	151140399	98110222	205	56799											
PI4KB	5298	broad.mit.edu	37	chr1	151278899	151278899	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactaacccccaaatctcaActctgttagcaaggttcttc	4	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151278899	G	G	151278899	1	3	54	0	1	0	0	0	0	0	0	0	11969	58	2	5		5	PI4KB	1	151278899	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	138500	151278899	97971722	206	56800											
CELF3	11189	broad.mit.edu	37	chr1	151684116	151684116	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtcgtgggggcagatgctCagggtgcatgggctttcacc	17	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151684116	T	T	151684116	1	4	54	0	1	0	0	0	0	0	0	0	3247	841	29	4		4	CELF3	1	151684116	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	405217	151684116	97566505	207	56801											
TCHH	7062	broad.mit.edu	37	chr1	152109529	152109529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccacataacattggctgGctcatgctggttaaccaagt	9	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152109529	T	T	152109529	1	4	54	0	1	0	0	0	0	0	0	0	15822	1218	42	3		3	TCHH	1	152109529	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	425413	152109529	97141092	208	56802											
HRNR	388697	broad.mit.edu	37	chr1	152191421	152191421	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctgacccagacccacgcTggccgtggcctggagactgg	14	16	0	3	rs138393626		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152191421	A	A	152191421	3	1	54	1	0	0	0	0	1	0	0	0	7426	1580	55	5	5872	5	HRNR	1	152191421	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	81892	152191421	97059200	209	56803											
FLG	2312	broad.mit.edu	37	chr1	152283550	152283550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcactgtcactgtcctggCtaacactggatccctggtgc	9	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283550	A	A	152283550	3	1	54	1	0	0	0	0	1	0	0	0	5979	797	28	3	8377	3	FLG	1	152283550	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92129	152283550	96967071	210	56804											
FLG2	388698	broad.mit.edu	37	chr1	152325990	152325990	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactgtcactggactcactAtggccagatccccttcttcc	6	16	4	1	rs140606934		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152325990	T	T	152325990	3	4	54	1	0	0	0	0	1	0	0	0	5980	446	16	5	2907	5	FLG2	1	152325990	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	42440	152325990	96924631	211	56805											
LCE3E	353145	broad.mit.edu	37	chr1	152538915	152538915	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtttctccaaagaaccCctagggaatgcacccttttg	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152538915	T	T	152538915	1	4	54	0	1	0	0	0	0	0	0	0	8745	638	22	4		4	LCE3E	1	152538915	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	212925	152538915	96711706	212	56806											
LCE4A	199834	broad.mit.edu	37	chr1	152681593	152681593	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagtgccagccccctccCaagtgtcctatccccaagta	7	18	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152681593	A	A	152681593	2	1	54	1	0	0	0	0	0	0	0	1	8746	581	21	2		2	LCE4A	1	152681593	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	142678	152681593	96569028	213	56807											
IVL	3713	broad.mit.edu	37	chr1	152883773	152883773	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcagcaggtaggacagccAaagcacctggaacagcagga	14	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152883773	T	T	152883773	2	4	54	1	0	0	0	0	0	0	0	1	7999	117	5	5		5	IVL	1	152883773	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	202180	152883773	96366848	214	56808											
S100A7A	338324	broad.mit.edu	37	chr1	153390471	153390472	+	Intron	DNP	CC	AA	AA													tttactctgtcctcagccctCcttctaacacccccacatag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	153390472	AA	AA	153390471	1	1	54	0	1	0	0	0	0	0	0	0	13895	870	30	3		3	S100A7A	1	153390471	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	506698	153390471	95860150	215	56809											
S100A7L2	645922	broad.mit.edu	37	chr1	153411414	153411414	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagccctgtcccgaacacAgggggcccttcctagaccct	9	18	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153411414	T	T	153411414	1	4	54	0	1	0	0	0	0	0	0	0	13896	203	7	5		5	S100A7L2	1	153411414	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	20943	153411414	95839207	216	56810											
INTS3	65123	broad.mit.edu	37	chr1	153723552	153723552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacagagcataggagccaGtgtgtttcctccctgcaggg	13	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153723552	T	T	153723552	1	4	54	0	1	0	0	0	0	0	0	0	7849	1044	36	3		3	INTS3	1	153723552	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	312138	153723552	95527069	217	56811											
ADAR	103	broad.mit.edu	37	chr1	154574329	154574329	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggatccttggctatgactGtctggtcttaccactccgct	11	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154574329	A	A	154574329	2	1	54	1	0	0	0	0	0	0	0	1	281	1368	48	4		4	ADAR	1	154574329	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	850777	154574329	94676292	218	56812											
FLAD1	80308	broad.mit.edu	37	chr1	154962044	154962044	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcttggcagggtcttctTtggggaaaaaggtggcaggt	16	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154962044	C	C	154962044	2	2	54	1	0	0	0	0	0	0	0	1	5977	1838	64	5		5	FLAD1	1	154962044	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	387715	154962044	94288577	219	56813											
EFNA3	1944	broad.mit.edu	37	chr1	155058673	155058673	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccccaatgtgaagatcaAcgtgctgggtgagtctgcgc	15	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155058673	G	G	155058673	3	3	54	1	0	0	0	0	1	0	0	0	4992	43	2	5	592	5	EFNA3	1	155058673	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	96629	155058673	94191948	220	56814											
ASH1L	55870	broad.mit.edu	37	chr1	155451539	155451539	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaacagtagaacccaatttCtttcccaaatctttattaac	2	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155451539	G	G	155451539	3	3	54	1	0	0	0	0	1	0	0	0	1045	912	32	4	7876	4	ASH1L	1	155451539	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	392866	155451539	93799082	221	56815											
YY1AP1	55249	broad.mit.edu	37	chr1	155629350	155629350	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgcaaaatctggggtttAagtaccctttaggggtttcc	11	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155629350	C	C	155629350	1	2	54	0	1	0	0	0	0	0	0	0	17635	377	13	5		5	YY1AP1	1	155629350	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	177811	155629350	93621271	222	56816											
YY1AP1	55249	broad.mit.edu	37	chr1	155629968	155629968	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactctgggccacagccgcaTtgacaggctggatcatgtta	12	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155629968	C	C	155629968	3	2	54	1	0	0	0	0	1	0	0	0	17635	1493	52	5	523	5	YY1AP1	1	155629968	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	618	155629968	93620653	223	56817											
IQGAP3	128239	broad.mit.edu	37	chr1	156501197	156501197	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ataggggatgtcgttgcctgGaataccttcccaacaaacta	9	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156501197	C	C	156501197	1	2	54	0	1	0	0	0	0	0	0	0	7886	1189	41	4		4	IQGAP3	1	156501197	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	871229	156501197	92749424	224	56818											
IQGAP3	128239	broad.mit.edu	37	chr1	156513047	156513047	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcctgagtgtgcatggccaGagaagggacaggcaaagccc	16	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156513047	C	C	156513047	1	2	54	0	1	0	0	0	0	0	0	0	7886	957	33	4		4	IQGAP3	1	156513047	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11850	156513047	92737574	225	56819											
IQGAP3	128239	broad.mit.edu	37	chr1	156533301	156533301	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcttggagccctcccaTacgcattgagcctactcctg	10	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156533301	C	C	156533301	1	2	54	0	1	0	0	0	0	0	0	0	7886	1421	49	5		5	IQGAP3	1	156533301	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	20254	156533301	92717320	226	56820											
TTC24	164118	broad.mit.edu	37	chr1	156553320	156553320	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctgccttcactccttgtCttctccccatcactcactca	2	19	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156553320	T	T	156553320	1	4	54	0	1	0	0	0	0	0	0	0	16818	928	32	4		4	TTC24	1	156553320	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	20019	156553320	92697301	227	56821											
BCAN	63827	broad.mit.edu	37	chr1	156616000	156616000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaaccaactgcttccagGcttaggggccccaggaagag	11	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156616000	T	T	156616000	1	4	54	0	1	0	0	0	0	0	0	0	1350	1218	42	3		3	BCAN	1	156616000	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	62680	156616000	92634621	228	56822											
BCAN	63827	broad.mit.edu	37	chr1	156627399	156627399	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggcagtcaccgcagacCgcccgggagcggggaacggc	16	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156627399	G	G	156627399	1	3	54	0	1	0	0	0	0	0	0	0	1350	667	23	4		4	BCAN	1	156627399	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11399	156627399	92623222	229	56823											
NES	10763	broad.mit.edu	37	chr1	156641642	156641642	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctagatccactttttctgGgggtcttaatgtcatctgat	8	8	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156641642	A	A	156641642	3	1	54	1	0	0	0	0	1	0	0	0	10432	1232	43	4	2531	4	NES	1	156641642	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14243	156641642	92608979	230	56824											
PEAR1	375033	broad.mit.edu	37	chr1	156873746	156873746	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcctctgtgtcccctccttCtcctggctgtgggcctgcgg	12	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156873746	T	T	156873746	3	4	54	1	0	0	0	0	1	0	0	0	11806	913	32	4	30	4	PEAR1	1	156873746	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	232104	156873746	92376875	231	56825											
FCRL5	83416	broad.mit.edu	37	chr1	157488180	157488180	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgagctatactgtctaagTtgagggtgggccagaacaga	13	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157488180	A	A	157488180	1	1	54	0	1	0	0	0	0	0	0	0	5855	1740	60	5		5	FCRL5	1	157488180	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	614434	157488180	91762441	232	56826											
FCRL5	83416	broad.mit.edu	37	chr1	157497520	157497520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggttgaaagaagcttctCctccagagggggctgagctg	15	8	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157497520	A	A	157497520	3	1	54	1	0	0	0	0	1	0	0	0	5855	855	30	3	1122	3	FCRL5	1	157497520	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9340	157497520	91753101	233	56827											
FCRL5	83416	broad.mit.edu	37	chr1	157512394	157512394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcacaagaaaagcacttgGcttctcagaaattgggaacc	9	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157512394	T	T	157512394	1	4	54	0	1	0	0	0	0	0	0	0	5855	1218	42	3		3	FCRL5	1	157512394	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14874	157512394	91738227	234	56828											
FCRL3	115352	broad.mit.edu	37	chr1	157650607	157650607	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcagtcaagagctcatattCtagactctacttcccaatca	5	12	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157650607	T	T	157650607	1	4	54	0	1	0	0	0	0	0	0	0	5853	928	32	4		4	FCRL3	1	157650607	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	138213	157650607	91600014	235	56829											
FCRL3	115352	broad.mit.edu	37	chr1	157665031	157665031	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggaagtctattgggatatCaaccagcaaatagcccagtg	11	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157665031	A	A	157665031	1	1	54	0	1	0	0	0	0	0	0	0	5853	841	29	3		3	FCRL3	1	157665031	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14424	157665031	91585590	236	56830											
FCRL1	115350	broad.mit.edu	37	chr1	157765808	157765808	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtatactggaaagctaatGccccaggatctctgaagaac	10	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157765808	A	A	157765808	1	1	54	0	1	0	0	0	0	0	0	0	5851	1334	46	4		4	FCRL1	1	157765808	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	100777	157765808	91484813	237	56831											
KIRREL	55243	broad.mit.edu	37	chr1	158024972	158024972	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctggggttgcctagcttaTtcttggcccacctgaagaag	12	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158024972	C	C	158024972	1	2	54	0	1	0	0	0	0	0	0	0	8395	1508	52	5		5	KIRREL	1	158024972	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	259164	158024972	91225649	238	56832											
KIRREL	55243	broad.mit.edu	37	chr1	158026814	158026814	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcatcttctcctaggAggaccccagcattccttcct	5	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158026814	T	T	158026814	1	4	54	0	1	0	0	0	0	0	0	0	8395	319	11	5		5	KIRREL	1	158026814	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1842	158026814	91223807	239	56833											
CD1A	909	broad.mit.edu	37	chr1	158224725	158224725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgaaggtggttgataagGcatgggactgtgtggcaagt	16	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158224725	T	T	158224725	1	4	54	0	1	0	0	0	0	0	0	0	3004	1218	42	3		3	CD1A	1	158224725	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	197911	158224725	91025896	240	56834											
CD1E	913	broad.mit.edu	37	chr1	158325385	158325385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccaactctctctctcccctCttgttcctagtactataact	2	17	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325385	A	A	158325385	1	1	54	0	1	0	0	0	0	0	0	0	3008	928	32	3		3	CD1E	1	158325385	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	100660	158325385	90925236	241	56835											
CD1E	913	broad.mit.edu	37	chr1	158325939	158325939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaataatgaaaatagcCctggggcttttgagtgtggg	15	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325939	A	A	158325939	1	1	54	0	1	0	0	0	0	0	0	0	3008	638	22	2		2	CD1E	1	158325939	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	554	158325939	90924682	242	56836											
SPTA1	6708	broad.mit.edu	37	chr1	158588930	158588930	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgctctcagagtctctccTcttcccttcaaacatgtatt	4	14	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158588930	C	C	158588930	1	2	54	0	1	0	0	0	0	0	0	0	15234	1566	54	5		5	SPTA1	1	158588930	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	262991	158588930	90661691	243	56837											
SPTA1	6708	broad.mit.edu	37	chr1	158596056	158596056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaagacatttggtcttGtttgagtcctgggaagcaga	13	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158596056	T	T	158596056	1	4	54	0	1	0	0	0	0	0	0	0	15234	1392	48	3		3	SPTA1	1	158596056	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7126	158596056	90654565	244	56838											
SPTA1	6708	broad.mit.edu	37	chr1	158606388	158606388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacacaaggggttgctaTaggatgatttctatattttc	9	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158606388	C	C	158606388	1	2	54	0	1	0	0	0	0	0	0	0	15234	1421	49	5		5	SPTA1	1	158606388	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	10332	158606388	90644233	245	56839											
SPTA1	6708	broad.mit.edu	37	chr1	158617296	158617296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagacagtctacttagaGgccagacacggaagttaccc	9	13	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158617296	T	T	158617296	1	4	54	0	1	0	0	0	0	0	0	0	15234	1015	35	2		2	SPTA1	1	158617296	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	10908	158617296	90633325	246	56840											
SPTA1	6708	broad.mit.edu	37	chr1	158624658	158624658	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcctctggctggaacctcTtacgtggctgcagagattaa	12	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158624658	A	A	158624658	1	1	54	0	1	0	0	0	0	0	0	0	15234	1624	56	5		5	SPTA1	1	158624658	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	7362	158624658	90625963	247	56841											
SPTA1	6708	broad.mit.edu	37	chr1	158636305	158636305	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctgggagaagacataagGtagaagacattaggtaccat	11	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158636305	C	C	158636305	1	2	54	0	1	0	0	0	0	0	0	0	15234	1276	44	4		4	SPTA1	1	158636305	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11647	158636305	90614316	248	56842											
SPTA1	6708	broad.mit.edu	37	chr1	158641698	158641698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagccttatagaaagggcCcatcttttctttttcttgtg	9	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158641698	T	T	158641698	1	4	54	0	1	0	0	0	0	0	0	0	15234	638	22	4		4	SPTA1	1	158641698	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5393	158641698	90608923	249	56843											
SPTA1	6708	broad.mit.edu	37	chr1	158644283	158644283	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcatttctggcattcagCcaaataacctgccccctcct	6	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158644283	G	G	158644283	1	3	54	0	1	0	0	0	0	0	0	0	15234	754	26	4		4	SPTA1	1	158644283	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2585	158644283	90606338	250	56844											
MNDA	4332	broad.mit.edu	37	chr1	158813531	158813531	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgataacagtaatgcatctGttgaaatcatccatctcctt	6	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158813531	C	C	158813531	1	2	54	0	1	0	0	0	0	0	0	0	9770	1392	48	4		4	MNDA	1	158813531	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	169248	158813531	90437090	251	56845											
PYHIN1	149628	broad.mit.edu	37	chr1	158906733	158906733	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaagaaaattgttctactGaaaggattagaggtcatcaa	8	5	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158906733	T	T	158906733	2	4	54	1	0	0	0	0	0	0	0	1	12973	1277	45	3		3	PYHIN1	1	158906733	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	93202	158906733	90343888	252	56846											
IFI16	3428	broad.mit.edu	37	chr1	159023359	159023359	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattcacttattatgaaataCaagataatacagggaagatg	7	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159023359	G	G	159023359	3	3	54	1	0	0	0	0	1	0	0	0	7581	479	17	4	1988	4	IFI16	1	159023359	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	116626	159023359	90227262	253	56847											
CADM3	57863	broad.mit.edu	37	chr1	159151206	159151206	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaacagacactcctaaaaTggctcagggctgttatcatc	7	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159151206	C	C	159151206	1	2	54	0	1	0	0	0	0	0	0	0	2594	1479	51	5		5	CADM3	1	159151206	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	127847	159151206	90099415	254	56848											
FCER1A	2205	broad.mit.edu	37	chr1	159275854	159275854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaggtgccatggttggagGaactgggatgtgtacaaggt	16	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159275854	T	T	159275854	3	4	54	1	0	0	0	0	1	0	0	0	5831	1165	41	3	422	3	FCER1A	1	159275854	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	124648	159275854	89974767	255	56849											
CRP	1401	broad.mit.edu	37	chr1	159683915	159683915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgggaaacacaaaagcCttcctcgacatgtctgtgag	9	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159683915	A	A	159683915	3	1	54	1	0	0	0	0	1	0	0	0	3927	680	24	2	603	2	CRP	1	159683915	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	408061	159683915	89566706	256	56850											
ATP1A2	477	broad.mit.edu	37	chr1	160100119	160100119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctcagaaggggattcCcaagcctctgcggcatccct	13	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160100119	A	A	160100119	1	1	54	0	1	0	0	0	0	0	0	0	1133	638	22	2		2	ATP1A2	1	160100119	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	416204	160100119	89150502	257	56851											
ATP1A4	480	broad.mit.edu	37	chr1	160147210	160147210	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcagacacacaccagcccAgccagaagcaagtcccagcc	7	18	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160147210	T	T	160147210	1	4	54	0	1	0	0	0	0	0	0	0	1135	203	7	5		5	ATP1A4	1	160147210	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	47091	160147210	89103411	258	56852											
SLAMF6	114836	broad.mit.edu	37	chr1	160460599	160460599	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtttgtctatagccggagGctctggggtgggagtcctat	15	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160460599	C	C	160460599	1	2	54	0	1	0	0	0	0	0	0	0	14481	1218	42	4		4	SLAMF6	1	160460599	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	313389	160460599	88790022	259	56853											
SLAMF6	114836	broad.mit.edu	37	chr1	160477402	160477402	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcaaatgcacataagtcGttctcataggacagaccata	6	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160477402	C	C	160477402	1	2	54	0	1	0	0	0	0	0	0	0	14481	1160	40	4		4	SLAMF6	1	160477402	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16803	160477402	88773219	260	56854											
CD84	8832	broad.mit.edu	37	chr1	160523972	160523972	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catgagccaatagtgagctgGagctggcttgtactagtttg	13	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160523972	C	C	160523972	1	2	54	0	1	0	0	0	0	0	0	0	3072	1189	41	4		4	CD84	1	160523972	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46570	160523972	88726649	261	56855											
CD84	8832	broad.mit.edu	37	chr1	160549114	160549114	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaaaaagacagttcaatgtCttccttaagggcaattttta	6	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160549114	A	A	160549114	1	1	54	0	1	0	0	0	0	0	0	0	3072	928	32	3		3	CD84	1	160549114	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25142	160549114	88701507	262	56856											
CD48	962	broad.mit.edu	37	chr1	160681606	160681606	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacagttgagagcctggctaGaaaaaggccggggctaaaaa	14	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160681606	A	A	160681606	1	1	54	0	1	0	0	0	0	0	0	0	3050	957	33	4		4	CD48	1	160681606	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	132492	160681606	88569015	263	56857											
CD244	51744	broad.mit.edu	37	chr1	160808165	160808165	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcagtcctttttgtccctCtgctctgaataaccatcatt	5	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160808165	G	G	160808165	1	3	54	0	1	0	0	0	0	0	0	0	3017	928	32	4		4	CD244	1	160808165	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	126559	160808165	88442456	264	56858											
FCER1G	2207	broad.mit.edu	37	chr1	161188844	161188844	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagctggccctacccctatAatgatcctgtgtcctaaatt	6	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161188844	C	C	161188844	1	2	54	0	1	0	0	0	0	0	0	0	5832	377	13	5		5	FCER1G	1	161188844	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	380679	161188844	88061777	265	56859											
TOMM40L	84134	broad.mit.edu	37	chr1	161211763	161211763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggatgcccttcacctgGggccagggattacaccgagc	13	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161211763	T	T	161211763	1	4	54	0	1	0	0	0	0	0	0	0	16482	1247	43	2		2	TOMM40L	1	161211763	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22919	161211763	88038858	266	56860											
FCGR2C	9103	broad.mit.edu	37	chr1	161561220	161561220	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgccaagatgtagggagggGagaagaggggatggacaagg	20	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161561220	T	T	161561220	1	4	54	0	1	0	0	0	0	0	0	0	5840	1189	41	3		3	FCGR2C	1	161561220	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	349457	161561220	87689401	267	56861											
FCGR2B	2213	broad.mit.edu	37	chr1	161645599	161645599	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtctgtggaacactaGgaggaggtttgggcttgaga	16	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161645599	A	A	161645599	1	1	54	0	1	0	0	0	0	0	0	0	5839	1015	35	4		4	FCGR2B	1	161645599	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	84379	161645599	87605022	268	56862											
FCGR2B	2213	broad.mit.edu	37	chr1	161645852	161645852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacattctgagaaccagggGccacccaagccctggcccag	11	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161645852	T	T	161645852	1	4	54	0	1	0	0	0	0	0	0	0	5839	1218	42	3		3	FCGR2B	1	161645852	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	253	161645852	87604769	269	56863											
FCRLB	127943	broad.mit.edu	37	chr1	161692650	161692650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggctttctcagagcttGggaaaccaggggcagaagaa	15	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161692650	T	T	161692650	1	4	54	0	1	0	0	0	0	0	0	0	5858	1363	47	2		2	FCRLB	1	161692650	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46798	161692650	87557971	270	56864											
ATF6	22926	broad.mit.edu	37	chr1	161790826	161790826	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttctgaaatcgatgttaGtttaattgtatttaatgtgg	8	2	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161790826	C	C	161790826	1	2	54	0	1	0	0	0	0	0	0	0	1088	1044	36	4		4	ATF6	1	161790826	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	98176	161790826	87459795	271	56865											
OLFML2B	25903	broad.mit.edu	37	chr1	161953755	161953755	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccttctgtgtgctcaggtCcgcggcattgagcttgctca	11	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161953755	G	G	161953755	3	3	54	1	0	0	0	0	1	0	0	0	10953	855	30	4	293	4	OLFML2B	1	161953755	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	162929	161953755	87296866	272	56866											
OLFML2B	25903	broad.mit.edu	37	chr1	161976081	161976081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcccttggaggctggggCtatacctctgggtgggcgta	18	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161976081	A	A	161976081	1	1	54	0	1	0	0	0	0	0	0	0	10953	812	28	3		3	OLFML2B	1	161976081	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22326	161976081	87274540	273	56867											
RGS5	8490	broad.mit.edu	37	chr1	163122206	163122206	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcctttgtactcaataGgtgcttaataaggtggtcga	10	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163122206	C	C	163122206	1	2	54	0	1	0	0	0	0	0	0	0	13417	1015	35	4		4	RGS5	1	163122206	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1146125	163122206	86128415	274	56868											
NUF2	83540	broad.mit.edu	37	chr1	163292091	163292091	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actaaactaacgggtgttttCtggtgcagcatagaccgaag	11	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163292091	T	T	163292091	1	4	54	0	1	0	0	0	0	0	0	0	10842	928	32	4		4	NUF2	1	163292091	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	169885	163292091	85958530	275	56869											
PBX1	5087	broad.mit.edu	37	chr1	164815008	164815008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaagcctataccttcccGtctcaccacctctctggata	5	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164815008	T	T	164815008	1	4	54	0	1	0	0	0	0	0	0	0	11586	1160	40	3		3	PBX1	1	164815008	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1522917	164815008	84435613	276	56870											
LMX1A	4009	broad.mit.edu	37	chr1	165182991	165182991	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtccttgccttcctcagCagttcctttccctgccccat	6	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165182991	G	G	165182991	3	3	54	1	0	0	0	0	1	0	0	0	8935	710	25	4	612	4	LMX1A	1	165182991	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	367983	165182991	84067630	277	56871											
LMX1A	4009	broad.mit.edu	37	chr1	165192717	165192717	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagcctttgccttcctaccTctagtaggagaagatggtga	11	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165192717	A	A	165192717	1	1	54	0	1	0	0	0	0	0	0	0	8935	1566	54	5		5	LMX1A	1	165192717	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	9726	165192717	84057904	278	56872											
LMX1A	4009	broad.mit.edu	37	chr1	165322458	165322458	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacctgtccaagatgacccGctgacagccctcgcagacag	9	15	0	4	rs139738225		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165322458	A	A	165322458	3	1	54	1	0	0	0	0	1	0	0	0	8935	1086	38	4	1058	4	LMX1A	1	165322458	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	129741	165322458	83928163	279	56873											
RXRG	6258	broad.mit.edu	37	chr1	165374873	165374873	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtcatggtggagacacaAgaaaaaaggagtcttggtcc	14	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165374873	C	C	165374873	1	2	54	0	1	0	0	0	0	0	0	0	13876	87	3	5		5	RXRG	1	165374873	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	52415	165374873	83875748	280	56874											
DUSP27	92235	broad.mit.edu	37	chr1	167086461	167086461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggcattcagtccatgcCcagaatcctggcagcaaact	9	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167086461	A	A	167086461	1	1	54	0	1	0	0	0	0	0	0	0	4864	638	22	2		2	DUSP27	1	167086461	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1711588	167086461	82164160	281	56875											
DUSP27	92235	broad.mit.edu	37	chr1	167095183	167095183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttcctgaagcagctgcGggagctcaatgagaagttga	15	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167095183	T	T	167095183	3	4	54	1	0	0	0	0	1	0	0	0	4864	1116	39	1	833	1	DUSP27	1	167095183	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8722	167095183	82155438	282	56876											
DUSP27	92235	broad.mit.edu	37	chr1	167097132	167097132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgtctgtgatcactatGcaagtggcagcagagttggc	14	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167097132	T	T	167097132	3	4	54	1	0	0	0	0	1	0	0	0	4864	1319	46	3	2782	3	DUSP27	1	167097132	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1949	167097132	82153489	283	56877											
ADCY10	55811	broad.mit.edu	37	chr1	167791624	167791624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccgaccaggcaggtgtggGgtttaaactaatccttcctg	11	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167791624	T	T	167791624	1	4	54	0	1	0	0	0	0	0	0	0	293	1247	43	2		2	ADCY10	1	167791624	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	694492	167791624	81458997	284	56878											
DCAF6	55827	broad.mit.edu	37	chr1	168035033	168035033	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaattatttgtatgactcAtcagtcatacaaaattattc	4	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168035033	T	T	168035033	1	4	54	0	1	0	0	0	0	0	0	0	4307	232	8	5		5	DCAF6	1	168035033	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	243409	168035033	81215588	285	56879											
XCL1	6375	broad.mit.edu	37	chr1	168550201	168550201	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcagtaatttctgcacaaGatctcttcatgtctgccctg	7	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168550201	T	T	168550201	1	4	54	0	1	0	0	0	0	0	0	0	17550	957	33	3		3	XCL1	1	168550201	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	515168	168550201	80700420	286	56880											
NME7	29922	broad.mit.edu	37	chr1	169169837	169169837	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctatcaggctcttacaatCtggatcaatattcccctgcc	5	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169169837	T	T	169169837	1	4	54	0	1	0	0	0	0	0	0	0	10591	928	32	4		4	NME7	1	169169837	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	619636	169169837	80080784	287	56881											
C1orf114	57821	broad.mit.edu	37	chr1	169385576	169385576	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagtttgatgagagaacctgGataccttggttgccagtgaa	12	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169385576	C	C	169385576	1	2	54	0	1	0	0	0	0	0	0	0	2007	1189	41	4		4	C1orf114	1	169385576	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	215739	169385576	79865045	288	56882											
F5	2153	broad.mit.edu	37	chr1	169492510	169492510	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaagctacatagaactcTgtggtatagcaggacttcag	10	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169492510	C	C	169492510	2	2	54	1	0	0	0	0	0	0	0	1	5391	1567	55	5		5	F5	1	169492510	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	106934	169492510	79758111	289	56883											
F5	2153	broad.mit.edu	37	chr1	169524262	169524262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatttctttggtgatttGggggtaattcaagattaatt	10	3	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169524262	T	T	169524262	1	4	54	0	1	0	0	0	0	0	0	0	5391	1363	47	2		2	F5	1	169524262	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31752	169524262	79726359	290	56884											
F5	2153	broad.mit.edu	37	chr1	169547045	169547045	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtactccctcacctgCccaaatgtccacaaacctta	4	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169547045	G	G	169547045	1	3	54	0	1	0	0	0	0	0	0	0	5391	754	26	4		4	F5	1	169547045	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22783	169547045	79703576	291	56885											
SELP	6403	broad.mit.edu	37	chr1	169558606	169558606	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccacaatcccaaactcaGgaaacagggttggtccagag	10	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169558606	T	T	169558606	1	4	54	0	1	0	0	0	0	0	0	0	14132	1015	35	2		2	SELP	1	169558606	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11561	169558606	79692015	292	56886											
SELP	6403	broad.mit.edu	37	chr1	169580662	169580662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccccgacactgagagcCcttggcctctctaccatgcc	7	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169580662	A	A	169580662	1	1	54	0	1	0	0	0	0	0	0	0	14132	638	22	2		2	SELP	1	169580662	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22056	169580662	79669959	293	56887											
C1orf112	55732	broad.mit.edu	37	chr1	169654350	169654350	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattcctcctaagccatgttCcatctgtgtgggaccccact	8	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169654350	A	A	169654350	1	1	54	0	1	0	0	0	0	0	0	0	2005	870	30	3		3	C1orf112	1	169654350	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	73688	169654350	79596271	294	56888											
C1orf112	55732	broad.mit.edu	37	chr1	169785346	169785346	+	Intron	DEL	T	-	-													taagaaggctttccatgaacTgggcaactgttggaaaccaa					rs35682787		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169785346	-	-	169785346	6	5	54	0	1	1	0	1	0	0	0	0	2005	1595	55	0		0	C1orf112	1	169785346	Intron	DEL	T	TCGA-17-Z022-01A-01W-0746-08	130996	169785346	79465275	295	56889											
C1orf112	55732	broad.mit.edu	37	chr1	169801665	169801665	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggcaaggaaggatatcatCtttgtcactgtctgtgaagc	11	8	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169801665	G	G	169801665	1	3	54	0	1	0	0	0	0	0	0	0	2005	928	32	4		4	C1orf112	1	169801665	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	16319	169801665	79448956	296	56890											
FMO2	2327	broad.mit.edu	37	chr1	171172959	171172959	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagtagattcctcctaaaCgggacaatgccctaatttaa	6	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171172959	T	T	171172959	1	4	54	0	1	0	0	0	0	0	0	0	6013	551	19	4		4	FMO2	1	171172959	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1371294	171172959	78077662	297	56891											
FMO1	2326	broad.mit.edu	37	chr1	171234088	171234088	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctcaggctcaccctgactTacagagtcagcatccacatg	7	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171234088	A	A	171234088	1	1	54	0	1	0	0	0	0	0	0	0	6012	1769	61	5		5	FMO1	1	171234088	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	61129	171234088	78016533	298	56892											
FMO1	2326	broad.mit.edu	37	chr1	171251350	171251350	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccaggcctcactgtacaAgtatatcttccctgcacatc	7	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171251350	C	C	171251350	3	2	54	1	0	0	0	0	1	0	0	0	6012	72	3	5	1083	5	FMO1	1	171251350	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	17262	171251350	77999271	299	56893											
BAT2L2	23215	broad.mit.edu	37	chr1	171494203	171494203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaccacagagtggaacGggacttagaaaaaggaaact	10	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171494203	T	T	171494203	1	4	54	0	1	0	0	0	0	0	0	0	1326	1131	39	1		1	BAT2L2	1	171494203	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	242853	171494203	77756418	300	56894											
DNM3	26052	broad.mit.edu	37	chr1	171875151	171875151	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagggaagaggcagttactaGattgtttagcctcttcacat	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171875151	T	T	171875151	1	4	54	0	1	0	0	0	0	0	0	0	4713	957	33	3		3	DNM3	1	171875151	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	380948	171875151	77375470	301	56895											
DNM3	26052	broad.mit.edu	37	chr1	172007640	172007640	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttggctcagcattttaatCtaatttctttagttttctat	4	8	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172007640	G	G	172007640	1	3	54	0	1	0	0	0	0	0	0	0	4713	928	32	4		4	DNM3	1	172007640	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	132489	172007640	77242981	302	56896											
FASLG	356	broad.mit.edu	37	chr1	172634624	172634625	+	Intron	DNP	CC	AA	AA													gtgatggatcaagttctgacCcctcagccagttctatacca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	172634625	AA	AA	172634624	1	1	54	0	1	0	0	0	0	0	0	0	5739	638	22	2		2	FASLG	1	172634624	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	626984	172634624	76615997	303	56897											
RC3H1	149041	broad.mit.edu	37	chr1	173921288	173921288	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atccaaaaactacagatggaGaaagaaaaaaaacaaaaaaa	5	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173921288	C	C	173921288	1	2	54	0	1	0	0	0	0	0	0	0	13274	957	33	4		4	RC3H1	1	173921288	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1286664	173921288	75329333	304	56898											
RABGAP1L	9910	broad.mit.edu	37	chr1	174593864	174593864	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaagagaagtattgccattCcacttccacttcagggcctt	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174593864	T	T	174593864	1	4	54	0	1	0	0	0	0	0	0	0	13073	870	30	4		4	RABGAP1L	1	174593864	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	672576	174593864	74656757	305	56899											
RABGAP1L	9910	broad.mit.edu	37	chr1	174616586	174616586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttatcgaagccctttccGcatctattgagataatcatg	6	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174616586	T	T	174616586	1	4	54	0	1	0	0	0	0	0	0	0	13073	1102	38	3		3	RABGAP1L	1	174616586	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22722	174616586	74634035	306	56900											
TNN	63923	broad.mit.edu	37	chr1	175105210	175105210	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggagacagaggactgtgccGagcagggtgttggtgggcat	20	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175105210	C	C	175105210	1	2	54	0	1	0	0	0	0	0	0	0	16446	1073	37	4		4	TNN	1	175105210	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	488624	175105210	74145411	307	56901											
TNN	63923	broad.mit.edu	37	chr1	175108247	175108247	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagcgaatgtgaaggcccagGacaggactgtgcactcctgt	14	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175108247	C	C	175108247	1	2	54	0	1	0	0	0	0	0	0	0	16446	1189	41	4		4	TNN	1	175108247	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3037	175108247	74142374	308	56902											
TNR	7143	broad.mit.edu	37	chr1	175324275	175324275	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actattccaatatcatgtacTtgggagtttccaatgtgctt	7	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175324275	C	C	175324275	1	2	54	0	1	0	0	0	0	0	0	0	16461	1624	56	5		5	TNR	1	175324275	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	216028	175324275	73926346	309	56903											
TNR	7143	broad.mit.edu	37	chr1	175325528	175325528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatggtggcagtatagtgGgtgctaggaagcaggtcaac	15	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175325528	T	T	175325528	2	4	54	1	0	0	0	0	0	0	0	1	16461	1219	43	2		2	TNR	1	175325528	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1253	175325528	73925093	310	56904											
TNR	7143	broad.mit.edu	37	chr1	175325590	175325590	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgtcaacaaggatggtctCtccagcgactgaactcaaat	8	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175325590	A	A	175325590	4	1	54	1	0	0	0	0	0	1	0	0	16461	922	32	3	1125	3	TNR	1	175325590	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	62	175325590	73925031	311	56905											
TNR	7143	broad.mit.edu	37	chr1	175325601	175325601	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatggtctctccagcgactGaactcaaatgaatatgaata	9	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175325601	A	A	175325601	1	1	54	0	1	0	0	0	0	0	0	0	16461	1305	45	4		4	TNR	1	175325601	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11	175325601	73925020	312	56906											
TNR	7143	broad.mit.edu	37	chr1	175331742	175331742	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttctacaagcccgaacaaCttcacccagatcttcagcca	4	16	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175331742	G	G	175331742	1	3	54	0	1	0	0	0	0	0	0	0	16461	580	20	4		4	TNR	1	175331742	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6141	175331742	73918879	313	56907											
TNR	7143	broad.mit.edu	37	chr1	175336425	175336425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccatactcagtgccagGtaccagatctatcagtggat	8	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175336425	T	T	175336425	3	4	54	1	0	0	0	0	1	0	0	0	16461	1261	44	3	2160	3	TNR	1	175336425	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4683	175336425	73914196	314	56908											
TNR	7143	broad.mit.edu	37	chr1	175355144	175355144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctttccctccttgtgcGtctctcccccaccgcagcct	5	22	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175355144	T	T	175355144	1	4	54	0	1	0	0	0	0	0	0	0	16461	1160	40	3		3	TNR	1	175355144	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	18719	175355144	73895477	315	56909											
TNR	7143	broad.mit.edu	37	chr1	175418026	175418026	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccatgccaaaaaacaggtCtggtctgatcctgcaccaac	7	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175418026	T	T	175418026	1	4	54	0	1	0	0	0	0	0	0	0	16461	928	32	4		4	TNR	1	175418026	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	62882	175418026	73832595	316	56910											
TNR	7143	broad.mit.edu	37	chr1	175427501	175427501	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatatatttgttcaaagggTatgggatttaagaaggacaa	10	2	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175427501	A	A	175427501	1	1	54	0	1	0	0	0	0	0	0	0	16461	1653	57	5		5	TNR	1	175427501	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	9475	175427501	73823120	317	56911											
TNR	7143	broad.mit.edu	37	chr1	175579405	175579405	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataacccccctcttttgttCtgggaaatggcttactacga	7	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175579405	A	A	175579405	1	1	54	0	1	0	0	0	0	0	0	0	16461	928	32	3		3	TNR	1	175579405	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	151904	175579405	73671216	318	56912											
TNR	7143	broad.mit.edu	37	chr1	175650544	175650544	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtcaaagagaaccaagGgaagagctggctttcatggc	14	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175650544	A	A	175650544	1	1	54	0	1	0	0	0	0	0	0	0	16461	1247	43	4		4	TNR	1	175650544	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	71139	175650544	73600077	319	56913											
TNR	7143	broad.mit.edu	37	chr1	175655191	175655191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgattgcacgcacacacGcacacacacacacacagagt	6	14	0	2	rs142990409	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175655191	T	T	175655191	1	4	54	0	1	0	0	0	0	0	0	0	16461	1102	38	3		3	TNR	1	175655191	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4647	175655191	73595430	320	56914											
TNR	7143	broad.mit.edu	37	chr1	175670406	175670406	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgattcctgttcctgctctCctctcttcaccatcgaaatg	5	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175670406	A	A	175670406	1	1	54	0	1	0	0	0	0	0	0	0	16461	870	30	3		3	TNR	1	175670406	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	15215	175670406	73580215	321	56915											
TNR	7143	broad.mit.edu	37	chr1	175673583	175673583	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggcatctgcctagagaagGatagtctggaaaaaagaagg	15	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175673583	A	A	175673583	1	1	54	0	1	0	0	0	0	0	0	0	16461	1189	41	4		4	TNR	1	175673583	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3177	175673583	73577038	322	56916											
TNR	7143	broad.mit.edu	37	chr1	175680512	175680512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctaggcaggagcatgcCtgccacattcaaggaacagg	12	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175680512	A	A	175680512	1	1	54	0	1	0	0	0	0	0	0	0	16461	696	24	2		2	TNR	1	175680512	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6929	175680512	73570109	323	56917											
TNR	7143	broad.mit.edu	37	chr1	175690034	175690034	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttcaagatccagctcAagtcccaccttttccatgaa	4	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175690034	G	G	175690034	1	3	54	0	1	0	0	0	0	0	0	0	16461	145	5	5		5	TNR	1	175690034	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	9522	175690034	73560587	324	56918											
TNR	7143	broad.mit.edu	37	chr1	175698211	175698211	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaactcacaaccctagtgttCcagttcctttcctgaggccc	6	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175698211	A	A	175698211	1	1	54	0	1	0	0	0	0	0	0	0	16461	870	30	3		3	TNR	1	175698211	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8177	175698211	73552410	325	56919											
PAPPA2	60676	broad.mit.edu	37	chr1	176449939	176449939	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctcttgccatcttgccagCaaggaaaatcctacgttcat	8	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176449939	G	G	176449939	1	3	54	0	1	0	0	0	0	0	0	0	11527	725	25	4		4	PAPPA2	1	176449939	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	751728	176449939	72800682	326	56920											
PAPPA2	60676	broad.mit.edu	37	chr1	176524942	176524942	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagagaaggtaattcctagGgaaggaagaagagaaagaaa	13	2	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176524942	C	C	176524942	1	2	54	0	1	0	0	0	0	0	0	0	11527	1247	43	4		4	PAPPA2	1	176524942	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	75003	176524942	72725679	327	56921											
PAPPA2	60676	broad.mit.edu	37	chr1	176525679	176525679	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggagtctaccccagcaGggctgggaactacctaaggc	12	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176525679	A	A	176525679	3	1	54	1	0	0	0	0	1	0	0	0	11527	1000	35	4	223	4	PAPPA2	1	176525679	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	737	176525679	72724942	328	56922											
PAPPA2	60676	broad.mit.edu	37	chr1	176661369	176661369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaagcccacccccatcCccattccacctatggtcatc	5	19	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176661369	A	A	176661369	3	1	54	1	0	0	0	0	1	0	0	0	11527	623	22	2	2610	2	PAPPA2	1	176661369	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	135690	176661369	72589252	329	56923											
PAPPA2	60676	broad.mit.edu	37	chr1	176734817	176734817	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagctgtatccatcggccCtgtgggaagcaggacagctg	13	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176734817	A	A	176734817	2	1	54	1	0	0	0	0	0	0	0	1	11527	668	24	2		2	PAPPA2	1	176734817	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	73448	176734817	72515804	330	56924											
PAPPA2	60676	broad.mit.edu	37	chr1	176790614	176790614	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaataatccacaaataTaaatgtcttaaatagcaact	2	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176790614	C	C	176790614	1	2	54	0	1	0	0	0	0	0	0	0	11527	1421	49	5		5	PAPPA2	1	176790614	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	55797	176790614	72460007	331	56925											
ASTN1	460	broad.mit.edu	37	chr1	176848358	176848358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgtaagtctaggcccctGttctggtttccattgctgag	11	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176848358	T	T	176848358	1	4	54	0	1	0	0	0	0	0	0	0	1068	1392	48	3		3	ASTN1	1	176848358	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	57744	176848358	72402263	332	56926											
ASTN1	460	broad.mit.edu	37	chr1	176853629	176853629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtggagagtctcagcctGtgtgcagacaggaaggaaca	14	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176853629	T	T	176853629	1	4	54	0	1	0	0	0	0	0	0	0	1068	1392	48	3		3	ASTN1	1	176853629	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5271	176853629	72396992	333	56927											
ASTN1	460	broad.mit.edu	37	chr1	176864008	176864008	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacagtgaaggagtcaaaaAagtaaggactatcatgacct	9	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176864008	G	G	176864008	1	3	54	0	1	0	0	0	0	0	0	0	1068	29	1	5		5	ASTN1	1	176864008	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	10379	176864008	72386613	334	56928											
ASTN1	460	broad.mit.edu	37	chr1	176901537	176901537	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttatcagtgacattcccTtttgctgcattttggaatga	7	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176901537	A	A	176901537	1	1	54	0	1	0	0	0	0	0	0	0	1068	1624	56	5		5	ASTN1	1	176901537	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	37529	176901537	72349084	335	56929											
ASTN1	460	broad.mit.edu	37	chr1	176939226	176939226	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcacacaatacccacagtCtattcagagtcttctctaag	4	13	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176939226	G	G	176939226	1	3	54	0	1	0	0	0	0	0	0	0	1068	928	32	4		4	ASTN1	1	176939226	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37689	176939226	72311395	336	56930											
ASTN1	460	broad.mit.edu	37	chr1	176939641	176939641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcatgtctggtgataGgattccttgtataagacttg	12	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176939641	T	T	176939641	1	4	54	0	1	0	0	0	0	0	0	0	1068	1015	35	2		2	ASTN1	1	176939641	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	415	176939641	72310980	337	56931											
ASTN1	460	broad.mit.edu	37	chr1	176952551	176952551	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagacagataggaaaaagCaattcagcaccttggtcttg	9	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176952551	G	G	176952551	1	3	54	0	1	0	0	0	0	0	0	0	1068	725	25	4		4	ASTN1	1	176952551	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	12910	176952551	72298070	338	56932											
ASTN1	460	broad.mit.edu	37	chr1	177001964	177001964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaggcacaagatggacaGcagcagagcgatcatgccac	11	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001964	T	T	177001964	3	4	54	1	0	0	0	0	1	0	0	0	1068	962	34	3	3479	3	ASTN1	1	177001964	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	49413	177001964	72248657	339	56933											
ASTN1	460	broad.mit.edu	37	chr1	177037246	177037246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctaagtgaacagcaatatGgaaaacagcatagccaggaa	11	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177037246	T	T	177037246	1	4	54	0	1	0	0	0	0	0	0	0	1068	1363	47	2		2	ASTN1	1	177037246	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	35282	177037246	72213375	340	56934											
FAM5B	57795	broad.mit.edu	37	chr1	177214753	177214753	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgctgtccacagttgagCagatgagatgctggggagca	14	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177214753	G	G	177214753	1	3	54	0	1	0	0	0	0	0	0	0	5644	725	25	4		4	FAM5B	1	177214753	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	177507	177214753	72035868	341	56935											
FAM5B	57795	broad.mit.edu	37	chr1	177223094	177223094	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggatgggtgaagagggtgtAaacactttacattttgttgc	14	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177223094	G	G	177223094	1	3	54	0	1	0	0	0	0	0	0	0	5644	377	13	5		5	FAM5B	1	177223094	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	8341	177223094	72027527	342	56936											
FAM5B	57795	broad.mit.edu	37	chr1	177232154	177232154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaagatgtgtgtatataCgtggcgaaagataaaagagg	12	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177232154	A	A	177232154	1	1	54	0	1	0	0	0	0	0	0	0	5644	551	19	3		3	FAM5B	1	177232154	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9060	177232154	72018467	343	56937											
FAM5B	57795	broad.mit.edu	37	chr1	177242683	177242683	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgacaatctggactcagtCagttctgtcttggtacagag	10	8	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177242683	A	A	177242683	2	1	54	1	0	0	0	0	0	0	0	1	5644	813	29	3		3	FAM5B	1	177242683	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10529	177242683	72007938	344	56938											
FAM5B	57795	broad.mit.edu	37	chr1	177242734	177242734	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtacagttacttggtaaGcagcactatgatggttttca	9	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177242734	A	A	177242734	1	1	54	0	1	0	0	0	0	0	0	0	5644	986	34	4		4	FAM5B	1	177242734	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	51	177242734	72007887	345	56939											
SEC16B	89866	broad.mit.edu	37	chr1	177913917	177913917	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggagtttccatcctgggCtgatgcctgcggcggcttca	16	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177913917	T	T	177913917	1	4	54	0	1	0	0	0	0	0	0	0	14100	812	28	4		4	SEC16B	1	177913917	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	671183	177913917	71336704	346	56940											
RASAL2	9462	broad.mit.edu	37	chr1	178163661	178163662	+	Intron	DNP	GG	TT	TT													tctctaagcaccaaggtcttGggcctgtagtgatgcatttt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	178163662	TT	TT	178163661	1	4	54	0	1	0	0	0	0	0	0	0	13172	1363	47	2		2	RASAL2	1	178163661	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	249744	178163661	71086960	347	56941											
C1orf125	126859	broad.mit.edu	37	chr1	179408902	179408902	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctctccgtctttgcactCaggctcagctggctcatggc	9	15	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179408902	T	T	179408902	1	4	54	0	1	0	0	0	0	0	0	0	2013	841	29	4		4	C1orf125	1	179408902	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1245241	179408902	69841719	348	56942											
C1orf125	126859	broad.mit.edu	37	chr1	179452372	179452372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgtatgtacttgtaagGgtttttgacgttatattttg	9	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179452372	T	T	179452372	1	4	54	0	1	0	0	0	0	0	0	0	2013	1247	43	2		2	C1orf125	1	179452372	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	43470	179452372	69798249	349	56943											
ACBD6	84320	broad.mit.edu	37	chr1	180378592	180378592	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgaagatttgtagcaaccCtgagttaagccaactattgg	9	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180378592	T	T	180378592	1	4	54	0	1	0	0	0	0	0	0	0	126	696	24	4		4	ACBD6	1	180378592	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	926220	180378592	68872029	350	56944											
XPR1	9213	broad.mit.edu	37	chr1	180780738	180780738	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctactgaaagataaatctAtcagggctaagttttttgtc	8	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180780738	G	G	180780738	1	3	54	0	1	0	0	0	0	0	0	0	17578	464	16	5		5	XPR1	1	180780738	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	402146	180780738	68469883	351	56945											
CACNA1E	777	broad.mit.edu	37	chr1	181471248	181471248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggatgggaggggtatgcAgggtggacttccaggtttgc	20	5	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181471248	T	T	181471248	1	4	54	0	1	0	0	0	0	0	0	0	2568	203	7	5		5	CACNA1E	1	181471248	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	690510	181471248	67779373	352	56946											
CACNA1E	777	broad.mit.edu	37	chr1	181479056	181479056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaatagaaggaagctcaCatggagagaattgtttattt	9	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181479056	A	A	181479056	1	1	54	0	1	0	0	0	0	0	0	0	2568	493	17	3		3	CACNA1E	1	181479056	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7808	181479056	67771565	353	56947											
CACNA1E	777	broad.mit.edu	37	chr1	181721516	181721516	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagttcttttcatctgcctGagctaaaggtcttagtttca	8	8	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181721516	T	T	181721516	1	4	54	0	1	0	0	0	0	0	0	0	2568	1305	45	3		3	CACNA1E	1	181721516	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	242460	181721516	67529105	354	56948											
CACNA1E	777	broad.mit.edu	37	chr1	181727257	181727257	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatgatgaaggtgagaggaGagaggcacaagagccgactg	17	5	0	6	rs57434679	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181727257	T	T	181727257	1	4	54	0	1	0	0	0	0	0	0	0	2568	957	33	3		3	CACNA1E	1	181727257	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5741	181727257	67523364	355	56949											
TEDDM1	127670	broad.mit.edu	37	chr1	182369011	182369011	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcattgatcatcacatgccAgcagaagaaggtggtgacaa	12	8	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182369011	T	T	182369011	3	4	54	1	0	0	0	0	1	0	0	0	15871	188	7	5	215	5	TEDDM1	1	182369011	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	641754	182369011	66881610	356	56950											
RNASEL	6041	broad.mit.edu	37	chr1	182555602	182555602	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcattgacatctgctccttTagaaaggaaaagtttcagca	7	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182555602	C	C	182555602	3	2	54	1	0	0	0	0	1	0	0	0	13527	1763	61	5	1909	5	RNASEL	1	182555602	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	186591	182555602	66695019	357	56951											
NPL	80896	broad.mit.edu	37	chr1	182778213	182778213	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgacagcattacatccTgatggattgatcagaaattc	8	8	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182778213	A	A	182778213	1	1	54	0	1	0	0	0	0	0	0	0	10680	1595	55	5		5	NPL	1	182778213	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	222611	182778213	66472408	358	56952											
NPL	80896	broad.mit.edu	37	chr1	182783996	182783996	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagccatggaccaaaggtAagtagataggtctgaatgca	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182783996	G	G	182783996	1	3	54	0	1	0	0	0	0	0	0	0	10680	377	13	5		5	NPL	1	182783996	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	5783	182783996	66466625	359	56953											
LAMC2	3918	broad.mit.edu	37	chr1	183181585	183181585	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttccttctctcctcctcccCtcaccctccttagacctctc	1	23	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183181585	G	G	183181585	1	3	54	0	1	0	0	0	0	0	0	0	8687	696	24	4		4	LAMC2	1	183181585	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	397589	183181585	66069036	360	56954											
LAMC2	3918	broad.mit.edu	37	chr1	183186972	183186972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttctaaaattaatattgaCggtgatggctgtacaactct	8	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183186972	T	T	183186972	1	4	54	0	1	0	0	0	0	0	0	0	8687	551	19	4		4	LAMC2	1	183186972	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5387	183186972	66063649	361	56955											
SMG7	9887	broad.mit.edu	37	chr1	183521246	183521246	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttcgcagtgcaacaaaaaGaaaaatccatcaggaactct	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183521246	C	C	183521246	1	2	54	0	1	0	0	0	0	0	0	0	14912	957	33	4		4	SMG7	1	183521246	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	334274	183521246	65729375	362	56956											
RGL1	23179	broad.mit.edu	37	chr1	183836625	183836625	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtgctgcggtctttggtGacttgacaagtgcagtttgg	15	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183836625	T	T	183836625	1	4	54	0	1	0	0	0	0	0	0	0	13384	1305	45	3		3	RGL1	1	183836625	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	315379	183836625	65413996	363	56957											
RGL1	23179	broad.mit.edu	37	chr1	183853077	183853077	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgtgatcagatgtactttCacttaaaacataggggagtg	10	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183853077	G	G	183853077	1	3	54	0	1	0	0	0	0	0	0	0	13384	841	29	4		4	RGL1	1	183853077	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	16452	183853077	65397544	364	56958											
C1orf21	81563	broad.mit.edu	37	chr1	184466789	184466789	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccattttaaaaattcattgGcagtgctcatacaagagaat	6	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184466789	C	C	184466789	1	2	54	0	1	0	0	0	0	0	0	0	2049	1218	42	4		4	C1orf21	1	184466789	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	613712	184466789	64783832	365	56959											
HMCN1	83872	broad.mit.edu	37	chr1	185749698	185749698	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttagcatgaagggctgatGaattttgtcgaaggcctttt	11	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185749698	A	A	185749698	1	1	54	0	1	0	0	0	0	0	0	0	7287	1305	45	4		4	HMCN1	1	185749698	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1282909	185749698	63500923	366	56960											
HMCN1	83872	broad.mit.edu	37	chr1	185813031	185813031	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttatcggtcctcttatttTaatagcatcccttgatcccc	5	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185813031	A	A	185813031	1	1	54	0	1	0	0	0	0	0	0	0	7287	1769	61	5		5	HMCN1	1	185813031	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	63333	185813031	63437590	367	56961											
HMCN1	83872	broad.mit.edu	37	chr1	186086677	186086677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgcactgcttcgggagttCcatttccctcaattcactgg	8	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186086677	A	A	186086677	3	1	54	1	0	0	0	0	1	0	0	0	7287	855	30	3	12076	3	HMCN1	1	186086677	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	273646	186086677	63163944	368	56962											
HMCN1	83872	broad.mit.edu	37	chr1	186120569	186120569	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttctagagaatgctactActaactcataagtatggtaa	7	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186120569	T	T	186120569	1	4	54	0	1	0	0	0	0	0	0	0	7287	406	14	5		5	HMCN1	1	186120569	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	33892	186120569	63130052	369	56963											
TPR	7175	broad.mit.edu	37	chr1	186314889	186314889	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttacttggaaaatactgTattgtagtgttactaaattg	7	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186314889	C	C	186314889	1	2	54	0	1	0	0	0	0	0	0	0	16540	1653	57	5		5	TPR	1	186314889	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	194320	186314889	62935732	370	56964											
FAM5C	339479	broad.mit.edu	37	chr1	190223962	190223962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataggagcagtgagagagGgcatctctgtcttgtgcctg	15	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190223962	T	T	190223962	1	4	54	0	1	0	0	0	0	0	0	0	5645	1247	43	2		2	FAM5C	1	190223962	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3909073	190223962	59026659	371	56965											
FAM5C	339479	broad.mit.edu	37	chr1	190234118	190234118	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgaagagctattggtggtGgaatcacttccttcagctcg	11	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190234118	T	T	190234118	2	4	54	1	0	0	0	0	0	0	0	1	5645	1335	47	2		2	FAM5C	1	190234118	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	10156	190234118	59016503	372	56966											
FAM5C	339479	broad.mit.edu	37	chr1	190370137	190370137	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaacaaccaaactttttgcCtgcttgcaggcatattgtgg	8	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190370137	G	G	190370137	1	3	54	0	1	0	0	0	0	0	0	0	5645	696	24	4		4	FAM5C	1	190370137	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	136019	190370137	58880484	373	56967											
RGS18	64407	broad.mit.edu	37	chr1	192153462	192153462	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacacaaaagaagtcattacAaacagcatcactcaacctac	3	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192153462	T	T	192153462	2	4	54	1	0	0	0	0	0	0	0	1	13409	117	5	5		5	RGS18	1	192153462	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1783325	192153462	57097159	374	56968											
KCNT2	343450	broad.mit.edu	37	chr1	196531189	196531189	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattgcaaatgtttcttattGacttgaaaaaggtgccaggc	10	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196531189	T	T	196531189	1	4	54	0	1	0	0	0	0	0	0	0	8162	1305	45	3		3	KCNT2	1	196531189	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4377727	196531189	52719432	375	56969											
CFHR3	10878	broad.mit.edu	37	chr1	196749073	196749073	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacatgtacggagaaaggcTggtctcctactcccagatgc	10	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196749073	A	A	196749073	3	1	54	1	0	0	0	0	1	0	0	0	3316	1580	55	5	410	5	CFHR3	1	196749073	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	217884	196749073	52501548	376	56970											
CFHR5	81494	broad.mit.edu	37	chr1	196958234	196958234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttagtcttgggaggatGtatgtgtcgaggaatttatc	14	3	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196958234	T	T	196958234	1	4	54	0	1	0	0	0	0	0	0	0	3318	1392	48	3		3	CFHR5	1	196958234	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	209161	196958234	52292387	377	56971											
ZBTB41	360023	broad.mit.edu	37	chr1	197159122	197159122	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagtggtgtcatcttggctCactgcaacctctgcctcccg	10	15	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197159122	T	T	197159122	1	4	54	0	1	0	0	0	0	0	0	0	17669	841	29	4		4	ZBTB41	1	197159122	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	200888	197159122	52091499	378	56972											
CRB1	23418	broad.mit.edu	37	chr1	197313647	197313647	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgattggcttagaactccCtgaccatgaactattttacc	8	10	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197313647	G	G	197313647	1	3	54	0	1	0	0	0	0	0	0	0	3880	696	24	4		4	CRB1	1	197313647	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	154525	197313647	51936974	379	56973											
CRB1	23418	broad.mit.edu	37	chr1	197332707	197332707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatctgctatcattgtaaaGtggtgctgggtgcagggttt	13	5	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197332707	T	T	197332707	1	4	54	0	1	0	0	0	0	0	0	0	3880	1044	36	3		3	CRB1	1	197332707	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19060	197332707	51917914	380	56974											
PTPRC	5788	broad.mit.edu	37	chr1	198687625	198687625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaagtcagtggtttaaagCaaatgtttcattggaatatt	8	5	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198687625	A	A	198687625	1	1	54	0	1	0	0	0	0	0	0	0	12905	725	25	3		3	PTPRC	1	198687625	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1354918	198687625	50562996	381	56975											
KIF14	9928	broad.mit.edu	37	chr1	200522786	200522786	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgagttactctactctcAtagctgccaacagaagtaga	8	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200522786	G	G	200522786	2	3	54	1	0	0	0	0	0	0	0	1	8346	224	8	5		5	KIF14	1	200522786	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1835161	200522786	48727835	382	56976											
KIF21B	23046	broad.mit.edu	37	chr1	200952025	200952025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagaggaaccatgggggCaggaacaggtctggagaggg	20	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200952025	A	A	200952025	1	1	54	0	1	0	0	0	0	0	0	0	8359	725	25	3		3	KIF21B	1	200952025	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	429239	200952025	48298596	383	56977											
KIF21B	23046	broad.mit.edu	37	chr1	200993783	200993783	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtccatctccctccctctGagcccagacgcctcttccct	5	21	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200993783	C	C	200993783	1	2	54	0	1	0	0	0	0	0	0	0	8359	1305	45	4		4	KIF21B	1	200993783	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41758	200993783	48256838	384	56978											
CACNA1S	779	broad.mit.edu	37	chr1	201030581	201030581	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccgcattggagtctatGgccttgtacagcagcctggg	12	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201030581	T	T	201030581	2	4	54	1	0	0	0	0	0	0	0	1	2573	1335	47	2		2	CACNA1S	1	201030581	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	36798	201030581	48220040	385	56979											
CACNA1S	779	broad.mit.edu	37	chr1	201038392	201038392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagtatcagcagcagcaGcagcataaagcaggcagtca	10	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201038392	T	T	201038392	1	4	54	0	1	0	0	0	0	0	0	0	2573	986	34	3		3	CACNA1S	1	201038392	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7811	201038392	48212229	386	56980											
LGR6	59352	broad.mit.edu	37	chr1	202204706	202204706	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattttcccacatccttcctGaccaaactttaacaaaatcc	1	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202204706	T	T	202204706	1	4	54	0	1	0	0	0	0	0	0	0	8830	1305	45	3		3	LGR6	1	202204706	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1166314	202204706	47045915	387	56981											
PPFIA4	8497	broad.mit.edu	37	chr1	203043277	203043277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaagagatacagtcatgCatggcttaatgatgcttagc	11	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203043277	A	A	203043277	1	1	54	0	1	0	0	0	0	0	0	0	12408	725	25	3		3	PPFIA4	1	203043277	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	838571	203043277	46207344	388	56982											
ADORA1	134	broad.mit.edu	37	chr1	203134370	203134370	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggaggcagatcctcacactCtgccctcctctcccccaggt	9	18	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203134370	T	T	203134370	1	4	54	0	1	0	0	0	0	0	0	0	326	928	32	4		4	ADORA1	1	203134370	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	91093	203134370	46116251	389	56983											
FMOD	2331	broad.mit.edu	37	chr1	203272658	203272658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggttttcaaggtggaagaCcaagattacactgtaccttc	9	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203272658	A	A	203272658	1	1	54	0	1	0	0	0	0	0	0	0	6017	522	18	3		3	FMOD	1	203272658	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	138288	203272658	45977963	390	56984											
PRELP	5549	broad.mit.edu	37	chr1	203455829	203455829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttctcgtcttctttttcCgtagaaatcaacggaaccca	6	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203455829	A	A	203455829	1	1	54	0	1	0	0	0	0	0	0	0	12579	667	23	1		1	PRELP	1	203455829	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	183171	203455829	45794792	391	56985											
SOX13	9580	broad.mit.edu	37	chr1	204092359	204092359	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggctcaggcgcagggctGatgcgcaggagggcccaact	18	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204092359	A	A	204092359	1	1	54	0	1	0	0	0	0	0	0	0	15058	1305	45	4		4	SOX13	1	204092359	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	636530	204092359	45158262	392	56986											
PIK3C2B	5287	broad.mit.edu	37	chr1	204394882	204394882	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcagttgctacaatagaatGagaaccaaaaaaatgttaag	8	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204394882	T	T	204394882	1	4	54	0	1	0	0	0	0	0	0	0	12005	1305	45	3		3	PIK3C2B	1	204394882	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	302523	204394882	44855739	393	56987											
NFASC	23114	broad.mit.edu	37	chr1	204814265	204814265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctttctggctgcttgtagTtaaaagagaaatgttttcct	8	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204814265	A	A	204814265	1	1	54	0	1	0	0	0	0	0	0	0	10454	1740	60	5		5	NFASC	1	204814265	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	419383	204814265	44436356	394	56988											
NFASC	23114	broad.mit.edu	37	chr1	204953162	204953162	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacacattgcagatcccagGgctgcgcccactgaagttaa	9	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204953162	A	A	204953162	1	1	54	0	1	0	0	0	0	0	0	0	10454	1223	43	4		4	NFASC	1	204953162	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	138897	204953162	44297459	395	56989											
RBBP5	5929	broad.mit.edu	37	chr1	205066366	205066366	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctaataagcagacgggaatGaagggatagccagggaaact	14	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205066366	T	T	205066366	1	4	54	0	1	0	0	0	0	0	0	0	13210	1305	45	3		3	RBBP5	1	205066366	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	113204	205066366	44184255	396	56990											
SRGAP2	23380	broad.mit.edu	37	chr1	206630303	206630303	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctctttggggaagccattCtgacatccctgacttcccca	8	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206630303	A	A	206630303	1	1	54	0	1	0	0	0	0	0	0	0	15264	928	32	3		3	SRGAP2	1	206630303	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1563937	206630303	42620318	397	56991											
MAPKAPK2	9261	broad.mit.edu	37	chr1	206905121	206905121	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcacgggactattccacagGacagagtcttagccaggacc	10	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206905121	T	T	206905121	1	4	54	0	1	0	0	0	0	0	0	0	9381	1189	41	3		3	MAPKAPK2	1	206905121	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	274818	206905121	42345500	398	56992											
C4BPA	722	broad.mit.edu	37	chr1	207300356	207300356	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attacagtaaaaatttacatCtagatcaataatttccttta	2	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207300356	G	G	207300356	1	3	54	0	1	0	0	0	0	0	0	0	2272	928	32	4		4	C4BPA	1	207300356	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	395235	207300356	41950265	399	56993											
CR1	1378	broad.mit.edu	37	chr1	207739293	207739293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaataggagcaacatttcaGgccaatctctccccttcatc	6	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207739293	T	T	207739293	1	4	54	0	1	0	0	0	0	0	0	0	3872	1015	35	2		2	CR1	1	207739293	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	438937	207739293	41511328	400	56994											
CD34	947	broad.mit.edu	37	chr1	208062439	208062439	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggaagataatgacttccCcccttactccagggagcccc	10	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208062439	T	T	208062439	1	4	54	0	1	0	0	0	0	0	0	0	3036	638	22	4		4	CD34	1	208062439	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	323146	208062439	41188182	401	56995											
PLXNA2	5362	broad.mit.edu	37	chr1	208310544	208310544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctgctgttcccaaggcCctttccagtctgtacggagc	9	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208310544	A	A	208310544	1	1	54	0	1	0	0	0	0	0	0	0	12215	638	22	2		2	PLXNA2	1	208310544	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	248105	208310544	40940077	402	56996											
CAMK1G	57172	broad.mit.edu	37	chr1	209775663	209775663	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatattgccaaatgttcccTgagaggcaaaatagtccctg	9	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209775663	A	A	209775663	1	1	54	0	1	0	0	0	0	0	0	0	2624	1595	55	5		5	CAMK1G	1	209775663	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1465119	209775663	39474958	403	56997											
HSD11B1	3290	broad.mit.edu	37	chr1	209873307	209873307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacactgatgcaaaaggtgGgttcccatggtcttgggcag	13	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209873307	T	T	209873307	1	4	54	0	1	0	0	0	0	0	0	0	7442	1247	43	2		2	HSD11B1	1	209873307	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	97644	209873307	39377314	404	56998											
C1orf107	27042	broad.mit.edu	37	chr1	210014250	210014250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgccccgttttactcctcGgatatcctcattgcttcccc	5	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210014250	T	T	210014250	2	4	54	1	0	0	0	0	0	0	0	1	2001	1103	39	1		1	C1orf107	1	210014250	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	140943	210014250	39236371	405	56999											
KCNH1	3756	broad.mit.edu	37	chr1	210957203	210957203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccaattcaggagtccatGgtccagcgggtcagtacaat	11	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210957203	T	T	210957203	1	4	54	0	1	0	0	0	0	0	0	0	8101	1363	47	2		2	KCNH1	1	210957203	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	942953	210957203	38293418	406	57000											
KCNH1	3756	broad.mit.edu	37	chr1	210995517	210995517	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagactggggtgatggggcTgggcagggcatgcattgggc	20	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210995517	A	A	210995517	1	1	54	0	1	0	0	0	0	0	0	0	8101	1595	55	5		5	KCNH1	1	210995517	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	38314	210995517	38255104	407	57001											
KCNH1	3756	broad.mit.edu	37	chr1	211171344	211171344	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggcctgccctaaaagagctCctgaaggaagcactaaacat	9	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211171344	A	A	211171344	1	1	54	0	1	0	0	0	0	0	0	0	8101	870	30	3		3	KCNH1	1	211171344	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	175827	211171344	38079277	408	57002											
PPP2R5A	5525	broad.mit.edu	37	chr1	212534110	212534110	+	Frame_Shift_Del	DEL	T	-	-													tcagcaatacaagtgccgaaTaaaaaaaaagcctcccacct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	212534110	-	-	212534110	7	5	54	1	0	1	0	1	0	0	0	0	12493	1419	49	0	1509	0	PPP2R5A	1	212534110	Frame_Shift_Del	DEL	T	TCGA-17-Z022-01A-01W-0746-08	1362766	212534110	36716511	409	57003											
CENPF	1063	broad.mit.edu	37	chr1	214822055	214822055	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaactgagctgcagaGggaaatgcatgagatggcac	14	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214822055	A	A	214822055	3	1	54	1	0	0	0	0	1	0	0	0	3261	1000	35	4	7918	4	CENPF	1	214822055	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2287945	214822055	34428566	410	57004											
KCNK2	3776	broad.mit.edu	37	chr1	215328003	215328003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaatctttgcccatgcCtatgtcctcaatggtattgc	7	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215328003	A	A	215328003	1	1	54	0	1	0	0	0	0	0	0	0	8136	696	24	2		2	KCNK2	1	215328003	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	505948	215328003	33922618	411	57005											
KCNK2	3776	broad.mit.edu	37	chr1	215332512	215332512	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacattacaaggcattagtGgataagagcagataagagac	11	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215332512	A	A	215332512	1	1	54	0	1	0	0	0	0	0	0	0	8136	1363	47	4		4	KCNK2	1	215332512	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4509	215332512	33918109	412	57006											
KCNK2	3776	broad.mit.edu	37	chr1	215368434	215368434	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctaaaaagacaaaagaagAggtgagaattaagaagtgtg	11	2	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215368434	T	T	215368434	3	4	54	1	0	0	0	0	1	0	0	0	8136	318	11	5	1027	5	KCNK2	1	215368434	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	35922	215368434	33882187	413	57007											
KCTD3	51133	broad.mit.edu	37	chr1	215751388	215751388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattggagcgttcctcttgtGgcagtgtcctttttcatggt	11	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215751388	T	T	215751388	3	4	54	1	0	0	0	0	1	0	0	0	8180	1348	47	2	383	2	KCTD3	1	215751388	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	382954	215751388	33499233	414	57008											
USH2A	7399	broad.mit.edu	37	chr1	215959901	215959901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaaagtatgatggaatGtactgatatcagtttaagga	10	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215959901	T	T	215959901	1	4	54	0	1	0	0	0	0	0	0	0	17162	1392	48	3		3	USH2A	1	215959901	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	208513	215959901	33290720	415	57009											
USH2A	7399	broad.mit.edu	37	chr1	216015950	216015950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgtggtacatgtacaCcatggaataccatgcagcca	9	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216015950	A	A	216015950	1	1	54	0	1	0	0	0	0	0	0	0	17162	522	18	3		3	USH2A	1	216015950	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	56049	216015950	33234671	416	57010											
USH2A	7399	broad.mit.edu	37	chr1	216074272	216074272	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgaaaaacacagatgaattaGagcagagaaaactgtggaga	11	5	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216074272	A	A	216074272	1	1	54	0	1	0	0	0	0	0	0	0	17162	957	33	4		4	USH2A	1	216074272	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	58322	216074272	33176349	417	57011											
USH2A	7399	broad.mit.edu	37	chr1	216241827	216241827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtgtctgatttggcgGgtgtggggtgggcagggcag	22	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216241827	T	T	216241827	1	4	54	0	1	0	0	0	0	0	0	0	17162	1247	43	2		2	USH2A	1	216241827	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	167555	216241827	33008794	418	57012											
USH2A	7399	broad.mit.edu	37	chr1	216246634	216246634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaacatccttcatgcaacCaccgaaacctagcaaatagt	4	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216246634	A	A	216246634	3	1	54	1	0	0	0	0	1	0	0	0	17162	594	21	2	10207	2	USH2A	1	216246634	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4807	216246634	33003987	419	57013											
USH2A	7399	broad.mit.edu	37	chr1	216318648	216318648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgatcagtacagcaaggGccaaggtacaaaggaggtag	14	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216318648	T	T	216318648	1	4	54	0	1	0	0	0	0	0	0	0	17162	1218	42	3		3	USH2A	1	216318648	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	72014	216318648	32931973	420	57014											
USH2A	7399	broad.mit.edu	37	chr1	216338058	216338058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgaatgatcagagtacCgtgtagtagagagaggtcat	13	4	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216338058	A	A	216338058	1	1	54	0	1	0	0	0	0	0	0	0	17162	667	23	1		1	USH2A	1	216338058	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	19410	216338058	32912563	421	57015											
USH2A	7399	broad.mit.edu	37	chr1	216390814	216390814	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgagccagtgacaaattgTttacagaaacactggcctgt	9	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216390814	A	A	216390814	3	1	54	1	0	0	0	0	1	0	0	0	17162	1722	60	5	12782	5	USH2A	1	216390814	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	52756	216390814	32859807	422	57016											
USH2A	7399	broad.mit.edu	37	chr1	216542671	216542671	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggaatccccacacatcccAtcctattgcttaccatccta	4	16	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216542671	T	T	216542671	1	4	54	0	1	0	0	0	0	0	0	0	17162	232	8	5		5	USH2A	1	216542671	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	151857	216542671	32707950	423	57017											
ESRRG	2104	broad.mit.edu	37	chr1	217214363	217214363	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttactccttttttacattggGaaccctcaacagctcagata	5	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217214363	T	T	217214363	1	4	54	0	1	0	0	0	0	0	0	0	5304	1189	41	3		3	ESRRG	1	217214363	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	671692	217214363	32036258	424	57018											
TGFB2	7042	broad.mit.edu	37	chr1	218607290	218607290	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcatgtgaccatgcaattGagatgacaatgcatggctat	10	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218607290	T	T	218607290	1	4	54	0	1	0	0	0	0	0	0	0	15941	1305	45	3		3	TGFB2	1	218607290	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1392927	218607290	30643331	425	57019											
SLC30A10	55532	broad.mit.edu	37	chr1	220100370	220100370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccaaagtcaatcctacCtctgatattcagagcttcag	7	12	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220100370	A	A	220100370	3	1	54	1	0	0	0	0	1	0	0	0	14668	695	24	2	751	2	SLC30A10	1	220100370	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1493080	220100370	29150251	426	57020											
EPRS	2058	broad.mit.edu	37	chr1	220162134	220162134	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatactgagccttcagggacAgtaagcattctacagcttca	8	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220162134	T	T	220162134	3	4	54	1	0	0	0	0	1	0	0	0	5233	188	7	5	2021	5	EPRS	1	220162134	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	61764	220162134	29088487	427	57021											
MARK1	4139	broad.mit.edu	37	chr1	220804251	220804251	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctctttttggcccactaAtcaaactagaaatgtcacat	4	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220804251	G	G	220804251	1	3	54	0	1	0	0	0	0	0	0	0	9404	116	4	5		5	MARK1	1	220804251	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	642117	220804251	28446370	428	57022											
MOSC1	64757	broad.mit.edu	37	chr1	220974932	220974932	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagggctatgaaggtatgaGagaatggccatcttgcagtg	14	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220974932	A	A	220974932	1	1	54	0	1	0	0	0	0	0	0	0	9807	957	33	4		4	MOSC1	1	220974932	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	170681	220974932	28275689	429	57023											
TAF1A	9015	broad.mit.edu	37	chr1	222753119	222753119	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctttaaataattcatgacGccaatatttttcatccggtt	4	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222753119	A	A	222753119	2	1	54	1	0	0	0	0	0	0	0	1	15638	1074	38	4		4	TAF1A	1	222753119	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1778187	222753119	26497502	430	57024											
AIDA	64853	broad.mit.edu	37	chr1	222867046	222867046	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaacagaaataaatcaaatCataatctttgttaaatagcc	3	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222867046	A	A	222867046	1	1	54	0	1	0	0	0	0	0	0	0	423	841	29	3		3	AIDA	1	222867046	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	113927	222867046	26383575	431	57025											
SUSD4	55061	broad.mit.edu	37	chr1	223395462	223395462	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcccccaggctctatccttCtgtgacctcactccaagata	6	16	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223395462	G	G	223395462	1	3	54	0	1	0	0	0	0	0	0	0	15528	928	32	4		4	SUSD4	1	223395462	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	528416	223395462	25855159	432	57026											
SUSD4	55061	broad.mit.edu	37	chr1	223396491	223396491	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaacagattgattcgactCtgtgctggggggtggagcgt	16	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223396491	A	A	223396491	1	1	54	0	1	0	0	0	0	0	0	0	15528	928	32	3		3	SUSD4	1	223396491	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1029	223396491	25854130	433	57027											
MIXL1	83881	broad.mit.edu	37	chr1	226413423	226413423	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctagctcccaaggtcagaaTtttgaaacctgttcccctct	6	13	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226413423	A	A	226413423	3	1	54	1	0	0	0	0	1	0	0	0	9690	1490	52	5	615	5	MIXL1	1	226413423	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3016932	226413423	22837198	434	57028											
C1orf95	375057	broad.mit.edu	37	chr1	226784576	226784576	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaggcatgtgtgctgcgtCttctggctgaacattgcagc	13	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226784576	G	G	226784576	2	3	54	1	0	0	0	0	0	0	0	1	2094	900	32	4		4	C1orf95	1	226784576	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	371153	226784576	22466045	435	57029											
ITPKB	3707	broad.mit.edu	37	chr1	226923986	226923986	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagtcgtctcctctggccTtttgcccacttcaggctccc	7	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226923986	A	A	226923986	3	1	54	1	0	0	0	0	1	0	0	0	7988	1608	56	5	1694	5	ITPKB	1	226923986	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	139410	226923986	22326635	436	57030											
PRSS38	339501	broad.mit.edu	37	chr1	228004852	228004852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcttggcctccccaggcCtgtgggctgaccacacagga	13	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228004852	A	A	228004852	1	1	54	0	1	0	0	0	0	0	0	0	12733	696	24	2		2	PRSS38	1	228004852	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1080866	228004852	21245769	437	57031											
OBSCN	84033	broad.mit.edu	37	chr1	228437432	228437432	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctatgaggggagctgtgcAggcgtcaggactccagtccc	14	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228437432	T	T	228437432	1	4	54	0	1	0	0	0	0	0	0	0	10907	203	7	5		5	OBSCN	1	228437432	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	432580	228437432	20813189	438	57032											
RAB4A	5867	broad.mit.edu	37	chr1	229424455	229424455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctaaaattaaatatgctGttcttgtttttcttttttag	5	4	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229424455	T	T	229424455	1	4	54	0	1	0	0	0	0	0	0	0	13054	1392	48	3		3	RAB4A	1	229424455	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	987023	229424455	19826166	439	57033											
RAB4A	5867	broad.mit.edu	37	chr1	229439419	229439419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtggacgttttatttataGtcgacatcatgtagtaggca	10	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229439419	T	T	229439419	1	4	54	0	1	0	0	0	0	0	0	0	13054	1044	36	3		3	RAB4A	1	229439419	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14964	229439419	19811202	440	57034											
ABCB10	23456	broad.mit.edu	37	chr1	229657333	229657333	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacatccaagtcgcttcagGcttacctttagcagagcacg	8	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229657333	C	C	229657333	1	2	54	0	1	0	0	0	0	0	0	0	41	1218	42	4		4	ABCB10	1	229657333	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	217914	229657333	19593288	441	57035											
PGBD5	79605	broad.mit.edu	37	chr1	230459518	230459518	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggcaggagtcaggcttggGatgttaggtgagttccagct	18	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230459518	C	C	230459518	1	2	54	0	1	0	0	0	0	0	0	0	11879	1189	41	4		4	PGBD5	1	230459518	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	802185	230459518	18791103	442	57036											
PGBD5	79605	broad.mit.edu	37	chr1	230468429	230468429	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcttccacacagccgccacActtaggagcgtggccccaga	10	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230468429	T	T	230468429	1	4	54	0	1	0	0	0	0	0	0	0	11879	174	6	5		5	PGBD5	1	230468429	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	8911	230468429	18782192	443	57037											
COG2	22796	broad.mit.edu	37	chr1	230824389	230824389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaggaaggaaggaagcGgcggattcccagggtagcct	18	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230824389	T	T	230824389	1	4	54	0	1	0	0	0	0	0	0	0	3690	1131	39	1		1	COG2	1	230824389	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	355960	230824389	18426232	444	57038											
AGT	183	broad.mit.edu	37	chr1	230845573	230845573	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtccaggaggtggacggCccatccagggacccagcgga	16	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230845573	T	T	230845573	1	4	54	0	1	0	0	0	0	0	0	0	399	754	26	4		4	AGT	1	230845573	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	21184	230845573	18405048	445	57039											
ARV1	64801	broad.mit.edu	37	chr1	231114909	231114909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggaacgtggatggggtgGcagcgactcctactgctgcc	17	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231114909	T	T	231114909	3	4	54	1	0	0	0	0	1	0	0	0	1006	1203	42	3	60	3	ARV1	1	231114909	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	269336	231114909	18135712	446	57040											
C1orf124	83932	broad.mit.edu	37	chr1	231474051	231474051	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taggagctagtcctggtcctCggctaggcggcttggggtcg	17	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231474051	G	G	231474051	1	3	54	0	1	0	0	0	0	0	0	0	2012	899	31	4		4	C1orf124	1	231474051	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	359142	231474051	17776570	447	57041											
SIPA1L2	57568	broad.mit.edu	37	chr1	232619670	232619670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctctgtgctctggcCtgctttgcaataaaggatcc	8	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232619670	A	A	232619670	3	1	54	1	0	0	0	0	1	0	0	0	14443	681	24	2	3391	2	SIPA1L2	1	232619670	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1145619	232619670	16630951	448	57042											
PCNXL2	80003	broad.mit.edu	37	chr1	233359012	233359012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaaaagatggaatcaaCggtgaccctgacaagggcag	13	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233359012	A	A	233359012	1	1	54	0	1	0	0	0	0	0	0	0	11686	551	19	3		3	PCNXL2	1	233359012	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	739342	233359012	15891609	449	57043											
KIAA1804	84451	broad.mit.edu	37	chr1	233489729	233489729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtctttGtgggggcaagaatttctcat	15	4	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233489729	T	T	233489729	1	4	54	0	1	0	0	0	0	0	0	0	8329	1392	48	3		3	KIAA1804	1	233489729	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	130717	233489729	15760892	450	57044											
SLC35F3	148641	broad.mit.edu	37	chr1	234076774	234076774	+	Intron	SNP	T	C	C													ttttccccagttgtcaccacTaagaatcccttgactgactg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234076774	C	C	234076774	1	2	54	0	1	0	0	0	0	0	0	0	14704	1537	53	5		5	SLC35F3	1	234076774	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	587045	234076774	15173847	451	57045	273	2									
SLC35F3	148641	broad.mit.edu	37	chr1	234076776	234076776	+	Intron	SNP	A	G	G													ttccccagttgtcaccactaAgaatcccttgactgactgct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234076776	G	G	234076776	1	3	54	0	1	0	0	0	0	0	0	0	14704	87	3	5		5	SLC35F3	1	234076776	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2	234076776	15173845	452	57046	273	2									
SLC35F3	148641	broad.mit.edu	37	chr1	234323842	234323842	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatacaaaaaattagctggGcatggtggcacatgcctgta	10	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234323842	A	A	234323842	1	1	54	0	1	0	0	0	0	0	0	0	14704	1218	42	4		4	SLC35F3	1	234323842	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	247066	234323842	14926779	453	57047											
TARBP1	6894	broad.mit.edu	37	chr1	234582570	234582570	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcttgggcactggaaccttTcaacctgcatgtgttcaaca	8	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234582570	C	C	234582570	3	2	54	1	0	0	0	0	1	0	0	0	15674	1792	62	5	2828	5	TARBP1	1	234582570	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	258728	234582570	14668051	454	57048											
GNG4	2786	broad.mit.edu	37	chr1	235747056	235747056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttgaccctgtccataCaggcttccatctttagctgc	6	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235747056	A	A	235747056	3	1	54	1	0	0	0	0	1	0	0	0	6593	478	17	3	152	3	GNG4	1	235747056	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1164486	235747056	13503565	455	57049											
LYST	1130	broad.mit.edu	37	chr1	235878332	235878332	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attagcaagatgatttggctTactacagcttttttgaggag	10	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235878332	C	C	235878332	1	2	54	0	1	0	0	0	0	0	0	0	9216	1769	61	5		5	LYST	1	235878332	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	131276	235878332	13372289	456	57050											
NID1	4811	broad.mit.edu	37	chr1	236156731	236156731	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggaaggagaaagaagagGgtaagagaacagagagggtg	20	1	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236156731	C	C	236156731	1	2	54	0	1	0	0	0	0	0	0	0	10509	1247	43	4		4	NID1	1	236156731	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	278399	236156731	13093890	457	57051											
HEATR1	55127	broad.mit.edu	37	chr1	236720721	236720721	+	Intron	DEL	A	-	-													atggagtagagggcattatgAaaaaaaccagcaaactgtgc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	236720721	-	-	236720721	6	5	54	0	1	1	0	1	0	0	0	0	7094	261	9	0		0	HEATR1	1	236720721	Intron	DEL	A	TCGA-17-Z022-01A-01W-0746-08	563990	236720721	12529900	458	57052											
ACTN2	88	broad.mit.edu	37	chr1	236906333	236906333	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggcctcaacgcacgagacTtgggcttatggtaagtagac	12	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236906333	A	A	236906333	2	1	54	1	0	0	0	0	0	0	0	1	205	1596	56	5		5	ACTN2	1	236906333	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	185612	236906333	12344288	459	57053											
RYR2	6262	broad.mit.edu	37	chr1	237390212	237390212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcagctggggttacagGtgtgcaccactacacctggc	12	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237390212	T	T	237390212	1	4	54	0	1	0	0	0	0	0	0	0	13880	1276	44	3		3	RYR2	1	237390212	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	483879	237390212	11860409	460	57054											
RYR2	6262	broad.mit.edu	37	chr1	237670075	237670075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatatccatgaactctgGgttatgaataaaattgagct	9	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237670075	T	T	237670075	3	4	54	1	0	0	0	0	1	0	0	0	13880	1241	43	2	2769	2	RYR2	1	237670075	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	279863	237670075	11580546	461	57055											
RYR2	6262	broad.mit.edu	37	chr1	237675162	237675162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaaaaaacaGgtattgatgctatatgttaa	5	2	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237675162	T	T	237675162	1	4	54	0	1	0	0	0	0	0	0	0	13880	1015	35	2		2	RYR2	1	237675162	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5087	237675162	11575459	462	57056											
RYR2	6262	broad.mit.edu	37	chr1	237741473	237741473	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggactgatctagtaagaaGaggagaaattgatgataaag	13	2	1	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237741473	T	T	237741473	1	4	54	0	1	0	0	0	0	0	0	0	13880	957	33	3		3	RYR2	1	237741473	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	66311	237741473	11509148	463	57057											
RYR2	6262	broad.mit.edu	37	chr1	237766466	237766466	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctaattagtgacgttcatGaatggatgaacgagattccc	9	7	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237766466	T	T	237766466	1	4	54	0	1	0	0	0	0	0	0	0	13880	1305	45	3		3	RYR2	1	237766466	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	24993	237766466	11484155	464	57058											
RYR2	6262	broad.mit.edu	37	chr1	237770982	237770982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgattgatttaaaattttaGtttggacaatttgaccatgc	7	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237770982	T	T	237770982	1	4	54	0	1	0	0	0	0	0	0	0	13880	1044	36	3		3	RYR2	1	237770982	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4516	237770982	11479639	465	57059											
RYR2	6262	broad.mit.edu	37	chr1	237780952	237780952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccaaaagaatttctttGgttagtttacacaaaagagg	7	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237780952	T	T	237780952	1	4	54	0	1	0	0	0	0	0	0	0	13880	1363	47	2		2	RYR2	1	237780952	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9970	237780952	11469669	466	57060											
RYR2	6262	broad.mit.edu	37	chr1	237796814	237796814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgtgattgagacctcaaCgtatgaactcaattttataa	7	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237796814	A	A	237796814	1	1	54	0	1	0	0	0	0	0	0	0	13880	551	19	3		3	RYR2	1	237796814	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	15862	237796814	11453807	467	57061											
RYR2	6262	broad.mit.edu	37	chr1	237806495	237806495	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaaaactatttctgagaGaggcataactttatgtatac	7	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237806495	A	A	237806495	1	1	54	0	1	0	0	0	0	0	0	0	13880	957	33	4		4	RYR2	1	237806495	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9681	237806495	11444126	468	57062											
RYR2	6262	broad.mit.edu	37	chr1	237947501	237947501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaacccagtgggagaagccCcaggtcaaggagtccaaaag	13	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237947501	A	A	237947501	2	1	54	1	0	0	0	0	0	0	0	1	13880	610	22	2		2	RYR2	1	237947501	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	141006	237947501	11303120	469	57063											
RYR2	6262	broad.mit.edu	37	chr1	237993894	237993894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgccacatggctttgaaaCccacactttacaggagcaca	8	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237993894	A	A	237993894	3	1	54	1	0	0	0	0	1	0	0	0	13880	507	18	3	15130	3	RYR2	1	237993894	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	46393	237993894	11256727	470	57064											
ZP4	57829	broad.mit.edu	37	chr1	238045741	238045741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattgacacatttggtctGggcaactcttctgtttcttg	8	8	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238045741	T	T	238045741	3	4	54	1	0	0	0	0	1	0	0	0	18347	1348	47	2	22	2	ZP4	1	238045741	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	51847	238045741	11204880	471	57065											
CHRM3	1131	broad.mit.edu	37	chr1	239590781	239590781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccactgccaacccagagcCtagcagggaaggagcctggg	14	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239590781	A	A	239590781	1	1	54	0	1	0	0	0	0	0	0	0	3409	696	24	2		2	CHRM3	1	239590781	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1545040	239590781	9659840	472	57066											
CHRM3	1131	broad.mit.edu	37	chr1	239595207	239595207	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctgccagagcactaaaatCatagatgtaataagttgtac	7	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239595207	A	A	239595207	1	1	54	0	1	0	0	0	0	0	0	0	3409	841	29	3		3	CHRM3	1	239595207	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4426	239595207	9655414	473	57067											
CHRM3	1131	broad.mit.edu	37	chr1	239868700	239868700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaataaagtagcagagactGgaaggcctaaacaacagaaa	10	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239868700	T	T	239868700	1	4	54	0	1	0	0	0	0	0	0	0	3409	1363	47	2		2	CHRM3	1	239868700	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	273493	239868700	9381921	474	57068											
CHRM3	1131	broad.mit.edu	37	chr1	240071406	240071406	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagaactgtgcctccgGgagagtgcttcattcagttc	12	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240071406	T	T	240071406	4	4	54	1	0	0	0	0	0	1	0	0	3409	1233	43	2	657	2	CHRM3	1	240071406	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	202706	240071406	9179215	475	57069											
FMN2	56776	broad.mit.edu	37	chr1	240370945	240370945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccggagcgggaatacctcctCcgccccctctacccggagcg	11	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240370945	A	A	240370945	3	1	54	1	0	0	0	0	1	0	0	0	6008	855	30	3	2851	3	FMN2	1	240370945	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	299539	240370945	8879676	476	57070											
FMN2	56776	broad.mit.edu	37	chr1	240493995	240493995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaataagactcgaggacaGgcagatggctttggattaga	14	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240493995	T	T	240493995	3	4	54	1	0	0	0	0	1	0	0	0	6008	991	35	2	4572	2	FMN2	1	240493995	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	123050	240493995	8756626	477	57071											
FMN2	56776	broad.mit.edu	37	chr1	240635700	240635700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccgaagaggtgtgtagaCagaagaaaggaaaatcactt	12	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240635700	A	A	240635700	3	1	54	1	0	0	0	0	1	0	0	0	6008	479	17	3	5155	3	FMN2	1	240635700	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	141705	240635700	8614921	478	57072											
RGS7	6000	broad.mit.edu	37	chr1	240934326	240934326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctctagcatctgcctctGctgtgtttttaataaaacaa	6	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240934326	T	T	240934326	1	4	54	0	1	0	0	0	0	0	0	0	13419	1334	46	3		3	RGS7	1	240934326	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	298626	240934326	8316295	479	57073											
RGS7	6000	broad.mit.edu	37	chr1	240990496	240990496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatggaaaaacagagagaCaaatgaatctttgggtgtga	13	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240990496	A	A	240990496	1	1	54	0	1	0	0	0	0	0	0	0	13419	493	17	3		3	RGS7	1	240990496	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	56170	240990496	8260125	480	57074											
RGS7	6000	broad.mit.edu	37	chr1	241249265	241249265	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgagcctgcttcccttgCtgctccaagtgaactaaggc	9	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241249265	T	T	241249265	1	4	54	0	1	0	0	0	0	0	0	0	13419	812	28	4		4	RGS7	1	241249265	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	258769	241249265	8001356	481	57075											
KMO	8564	broad.mit.edu	37	chr1	241725606	241725606	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcatgggtacatggagTtgactattccacctaagaac	8	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241725606	A	A	241725606	3	1	54	1	0	0	0	0	1	0	0	0	8495	1722	60	5	615	5	KMO	1	241725606	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	476341	241725606	7525015	482	57076											
WDR64	128025	broad.mit.edu	37	chr1	241876700	241876700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaggaaggaaggaagGgagggagggaggaagggaag	23	0	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241876700	T	T	241876700	1	4	54	0	1	0	0	0	0	0	0	0	17442	1247	43	2		2	WDR64	1	241876700	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	151094	241876700	7373921	483	57077											
WDR64	128025	broad.mit.edu	37	chr1	241901785	241901785	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgccaatcatggcatgcttAttacgggtaagtgtacccaa	9	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241901785	G	G	241901785	3	3	54	1	0	0	0	0	1	0	0	0	17442	449	16	5	1323	5	WDR64	1	241901785	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	25085	241901785	7348836	484	57078											
WDR64	128025	broad.mit.edu	37	chr1	241930531	241930532	+	Intron	DNP	GG	TT	TT													cgtctgatttattacagattGgggctaacaagggccaatgt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	241930532	TT	TT	241930531	1	4	54	0	1	0	0	0	0	0	0	0	17442	1363	47	2		2	WDR64	1	241930531	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	28746	241930531	7320090	485	57079											
WDR64	128025	broad.mit.edu	37	chr1	241943427	241943427	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttattgagcatttctctGtgctagacaccataaaggat	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241943427	C	C	241943427	1	2	54	0	1	0	0	0	0	0	0	0	17442	1392	48	4		4	WDR64	1	241943427	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12896	241943427	7307194	486	57080											
WDR64	128025	broad.mit.edu	37	chr1	241947933	241947933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtaaggtcctatttggaGgcaaaaggtcagagttactt	13	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241947933	T	T	241947933	1	4	54	0	1	0	0	0	0	0	0	0	17442	1015	35	2		2	WDR64	1	241947933	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4506	241947933	7302688	487	57081											
AKT3	10000	broad.mit.edu	37	chr1	243946696	243946696	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgatggcatccatgtgccAgcagggtggcataccctaac	12	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243946696	T	T	243946696	1	4	54	0	1	0	0	0	0	0	0	0	481	203	7	5		5	AKT3	1	243946696	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1998763	243946696	5303925	488	57082											
ZNF695	57116	broad.mit.edu	37	chr1	247163260	247163260	+	Silent	SNP	C	T	T													ctatcctcaccaagggagatCaggtttctgtagttctctaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247163260	T	T	247163260	2	4	54	1	0	0	0	0	0	0	0	1	18225	813	29	4		4	ZNF695	1	247163260	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3216564	247163260	2087361	489	57083	274	2									
ZNF695	57116	broad.mit.edu	37	chr1	247163267	247163267	+	Missense_Mutation	SNP	C	T	T													caccaagggagatcaggtttCtgtagttctctaacatcaca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247163267	T	T	247163267	3	4	54	1	0	0	0	0	1	0	0	0	18225	913	32	4	1446	4	ZNF695	1	247163267	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7	247163267	2087354	490	57084	274	2									
VN1R5	317705	broad.mit.edu	37	chr1	247419870	247419870	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgcaagtcacatcttagGattcttccttttctcatggg	7	10	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247419870	A	A	247419870	3	1	54	1	0	0	0	0	1	0	0	0	17308	1174	41	4	499	4	VN1R5	1	247419870	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	256603	247419870	1830751	491	57085											
NLRP3	114548	broad.mit.edu	37	chr1	247587296	247587296	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggagccagcaggagagggAgcaggagcttctggccatcg	17	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247587296	G	G	247587296	3	3	54	1	0	0	0	0	1	0	0	0	10573	304	11	5	561	5	NLRP3	1	247587296	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	167426	247587296	1663325	492	57086											
NLRP3	114548	broad.mit.edu	37	chr1	247607262	247607262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgaggactcttctccctGtccttctacaggttggtgaa	9	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247607262	T	T	247607262	1	4	54	0	1	0	0	0	0	0	0	0	10573	1392	48	3		3	NLRP3	1	247607262	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19966	247607262	1643359	493	57087											
OR2W3	343171	broad.mit.edu	37	chr1	248059203	248059203	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagctcttcctgttcctGggtctgggtggtgtggagtg	15	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059203	T	T	248059203	2	4	54	1	0	0	0	0	0	0	0	1	11127	1335	47	2		2	OR2W3	1	248059203	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	451941	248059203	1191418	494	57088											
OR2W3	343171	broad.mit.edu	37	chr1	248059497	248059497	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccgtctttgtcctggcGgtgggtgttgtgctgtcccc	15	12	1	0	rs140094589	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059497	T	T	248059497	2	4	54	1	0	0	0	0	0	0	0	1	11127	1103	39	1		1	OR2W3	1	248059497	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	294	248059497	1191124	495	57089											
OR2L13	284521	broad.mit.edu	37	chr1	248099393	248099393	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacggggtgcagaagagtctCagccagagtgatgtgctggg	18	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248099393	A	A	248099393	1	1	54	0	1	0	0	0	0	0	0	0	11100	841	29	3		3	OR2L13	1	248099393	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	39896	248099393	1151228	496	57090											
OR2AK2	391191	broad.mit.edu	37	chr1	248128867	248128867	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actccaatgtactttctgctCagtcagctctccatcgttga	6	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248128867	A	A	248128867	2	1	54	1	0	0	0	0	0	0	0	1	11080	813	29	3		3	OR2AK2	1	248128867	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	29474	248128867	1121754	497	57091											
OR2AK2	391191	broad.mit.edu	37	chr1	248128912	248128913	+	Missense_Mutation	DNP	GC	TT	TT													atgtacatctccaccacagtGcccaagatggcagtcagctt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	248128913	TT	TT	248128912	3	4	54	1	0	0	0	0	1	0	0	0	11080	1306	46	3	281	3	OR2AK2	1	248128912	Missense_Mutation	DNP	GC	TCGA-17-Z022-01A-01W-0746-08	45	248128912	1121709	498	57092											
OR2AK2	391191	broad.mit.edu	37	chr1	248129452	248129452	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaaccactctctttacCtacacaaggccacactcctt	3	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248129452	A	A	248129452	2	1	54	1	0	0	0	0	0	0	0	1	11080	668	24	2		2	OR2AK2	1	248129452	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	540	248129452	1121169	499	57093											
OR2L13	284521	broad.mit.edu	37	chr1	248166365	248166365	+	Intron	SNP	C	A	A													attcagggattgaaattctgCggataaggatgaatttctgt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248166365	A	A	248166365	1	1	54	0	1	0	0	0	0	0	0	0	11100	783	27	3		3	OR2L13	1	248166365	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	36913	248166365	1084256	500	57094	275	2									
OR2L13	284521	broad.mit.edu	37	chr1	248166367	248166367	+	Intron	SNP	G	A	A													tcagggattgaaattctgcgGataaggatgaatttctgtct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248166367	A	A	248166367	1	1	54	0	1	0	0	0	0	0	0	0	11100	1189	41	4		4	OR2L13	1	248166367	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2	248166367	1084254	501	57095	275	2									
OR2L2	26246	broad.mit.edu	37	chr1	248202321	248202321	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgtagtgtccttctactAtgcaccctttgcttatacct	5	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248202321	C	C	248202321	3	2	54	1	0	0	0	0	1	0	0	0	11101	449	16	5	754	5	OR2L2	1	248202321	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	35954	248202321	1048300	502	57096											
OR2M5	127059	broad.mit.edu	37	chr1	248308751	248308751	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggttgtgccacacaaaTtttcttctatgtatcactgc	8	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248308751	G	G	248308751	3	3	54	1	0	0	0	0	1	0	0	0	11107	1493	52	5	304	5	OR2M5	1	248308751	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	106430	248308751	941870	503	57097											
OR2T33	391195	broad.mit.edu	37	chr1	248437312	248437312	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgtagctcaacttttTaatgttttaactgagatcgt	6	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248437312	G	G	248437312	1	3	54	0	1	0	0	0	0	0	0	0	11118	1769	61	5		5	OR2T33	1	248437312	5'Flank	SNP	T	TCGA-17-Z022-01A-01W-0746-08	128561	248437312	813309	504	57098											
OR2T12	127064	broad.mit.edu	37	chr1	248459021	248459021	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgattcaaagccctgactcCcagtaggcacagcttttcct	8	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248459021	G	G	248459021	1	3	54	0	1	0	0	0	0	0	0	0	11113	638	22	4		4	OR2T12	1	248459021	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	21709	248459021	791600	505	57099											
OR2G6	391211	broad.mit.edu	37	chr1	248685079	248685079	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttctggggaacactgcCctcatactagtatgttgtct	9	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248685079	A	A	248685079	2	1	54	1	0	0	0	0	0	0	0	1	11094	610	22	2		2	OR2G6	1	248685079	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	226058	248685079	565542	506	57100											
OR14I1	401994	broad.mit.edu	37	chr1	248844738	248844738	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaatctccttattcctaaGactatatatgatgggattga	6	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248844738	T	T	248844738	3	4	54	1	0	0	0	0	1	0	0	0	11041	942	33	3	71	3	OR14I1	1	248844738	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	159659	248844738	405883	507	57101											
FAM110C	642273	broad.mit.edu	37	chr2	41715	41715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattatactggtctggtcCctgtagtttttgttttctga	8	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41715	A	A	41715	1	1	54	0	1	0	0	0	0	0	0	0	5444	638	22	2		2	FAM110C	2	41715	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08		41715	243157658	508	57102											
FAM150B	285016	broad.mit.edu	37	chr2	283054	283054	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcccatgaatttttcatgtCccaagcgggattcccatctt	6	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	283054	T	T	283054	1	4	54	0	1	0	0	0	0	0	0	0	5503	870	30	4		4	FAM150B	2	283054	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	241339	283054	242916319	509	57103											
SNTG2	54221	broad.mit.edu	37	chr2	1020896	1020896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgagcaggaagaagcatgCcatcccagctgggagcaact	12	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1020896	A	A	1020896	1	1	54	0	1	0	0	0	0	0	0	0	14989	754	26	3		3	SNTG2	2	1020896	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	737842	1020896	242178477	510	57104											
SNTG2	54221	broad.mit.edu	37	chr2	1023060	1023060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtctgacccacagacaCtacccagcaagtaactcatg	8	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1023060	A	A	1023060	1	1	54	0	1	0	0	0	0	0	0	0	14989	580	20	3		3	SNTG2	2	1023060	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2164	1023060	242176313	511	57105											
PXDN	7837	broad.mit.edu	37	chr2	1677191	1677191	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgccccggctgtgtggacTatgagtgtgtccccagatga	13	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1677191	A	A	1677191	1	1	54	0	1	0	0	0	0	0	0	0	12955	1537	53	5		5	PXDN	2	1677191	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	654131	1677191	241522182	512	57106											
MYT1L	23040	broad.mit.edu	37	chr2	1890417	1890417	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggcaggtcagtcaactgCgaagcgcgtaactcccaaac	10	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1890417	T	T	1890417	1	4	54	0	1	0	0	0	0	0	0	0	10201	783	27	4		4	MYT1L	2	1890417	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	213226	1890417	241308956	513	57107											
MYT1L	23040	broad.mit.edu	37	chr2	1891528	1891528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggtcctgataacgcccCtactgaaaatgcatattgaa	7	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1891528	A	A	1891528	1	1	54	0	1	0	0	0	0	0	0	0	10201	696	24	2		2	MYT1L	2	1891528	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1111	1891528	241307845	514	57108											
MYT1L	23040	broad.mit.edu	37	chr2	2336220	2336220	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcttttgggacagggtGggggggcggttgataagtct	17	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2336220	T	T	2336220	1	4	54	0	1	0	0	0	0	0	0	0	10201	1363	47	2		2	MYT1L	2	2336220	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	444692	2336220	240863153	515	57109											
ASAP2	8853	broad.mit.edu	37	chr2	9472729	9472729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacggggctcatgctcacgcGctctcactctcgctctctgt	9	16	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9472729	T	T	9472729	1	4	54	0	1	0	0	0	0	0	0	0	1015	1102	38	3		3	ASAP2	2	9472729	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7136509	9472729	233726644	516	57110											
GRHL1	29841	broad.mit.edu	37	chr2	10130810	10130810	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagaatcatatcttgtcttCtcttaacctacagggagctg	7	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10130810	T	T	10130810	1	4	54	0	1	0	0	0	0	0	0	0	6829	928	32	4		4	GRHL1	2	10130810	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	658081	10130810	233068563	517	57111											
GREB1	9687	broad.mit.edu	37	chr2	11706502	11706502	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaagcacacccaggggtAagggtttctcctgagcagac	13	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11706502	G	G	11706502	1	3	54	0	1	0	0	0	0	0	0	0	6826	377	13	5		5	GREB1	2	11706502	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1575692	11706502	231492871	518	57112											
NBAS	51594	broad.mit.edu	37	chr2	15560631	15560631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttatttacaaaataCaagggatgtgaattttatgc	6	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15560631	A	A	15560631	1	1	54	0	1	0	0	0	0	0	0	0	10280	493	17	3		3	NBAS	2	15560631	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3854129	15560631	227638742	519	57113											
NBAS	51594	broad.mit.edu	37	chr2	15700034	15700034	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcttcctagctgcataacCcaaaaaatattcacattaag	4	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15700034	G	G	15700034	1	3	54	0	1	0	0	0	0	0	0	0	10280	638	22	4		4	NBAS	2	15700034	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	139403	15700034	227499339	520	57114											
MYCN	4613	broad.mit.edu	37	chr2	16082254	16082254	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagacctcgagtttgactCgctacagccctgcttctacc	7	17	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16082254	A	A	16082254	4	1	54	1	0	0	0	0	0	1	0	0	10115	893	31	3	70	3	MYCN	2	16082254	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	382220	16082254	227117119	521	57115											
FAM49A	81553	broad.mit.edu	37	chr2	16794657	16794657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccaaggacactcattccCctgctttcaaaaggccttca	5	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16794657	A	A	16794657	1	1	54	0	1	0	0	0	0	0	0	0	5626	638	22	2		2	FAM49A	2	16794657	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	712403	16794657	226404716	522	57116											
FAM49A	81553	broad.mit.edu	37	chr2	16818758	16818758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggaagccagccctcacCagacaccaggtctgcccaca	9	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16818758	A	A	16818758	1	1	54	0	1	0	0	0	0	0	0	0	5626	609	21	2		2	FAM49A	2	16818758	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	24101	16818758	226380615	523	57117											
NT5C1B	93034	broad.mit.edu	37	chr2	18768074	18768074	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactggtgccccactgagGttgcagggggactctaaggc	15	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18768074	T	T	18768074	1	4	54	0	1	0	0	0	0	0	0	0	10781	1276	44	3		3	NT5C1B	2	18768074	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1949316	18768074	224431299	524	57118											
WDR35	57539	broad.mit.edu	37	chr2	20180336	20180336	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcactgtgcagtcaggatGaactcctgttgttagtaaaa	9	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20180336	A	A	20180336	1	1	54	0	1	0	0	0	0	0	0	0	17416	1305	45	4		4	WDR35	2	20180336	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1412262	20180336	223019037	525	57119											
APOB	338	broad.mit.edu	37	chr2	21241910	21241910	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatccaccaaggctctgtcCtctctctggagctcataggt	9	13	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21241910	G	G	21241910	3	3	54	1	0	0	0	0	1	0	0	0	787	680	24	4	10656	4	APOB	2	21241910	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1061574	21241910	221957463	526	57120											
ITSN2	50618	broad.mit.edu	37	chr2	24557614	24557614	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgttgagcccaactgcagaTctaagagaatgttggctatt	11	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24557614	A	A	24557614	1	1	54	0	1	0	0	0	0	0	0	0	7997	1450	50	5		5	ITSN2	2	24557614	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3315704	24557614	218641759	527	57121											
GPR113	165082	broad.mit.edu	37	chr2	26534166	26534166	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccatgttgagcagggcGgcgtggcggaaataggagat	16	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26534166	T	T	26534166	2	4	54	1	0	0	0	0	0	0	0	1	6695	1103	39	1		1	GPR113	2	26534166	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1976552	26534166	216665207	528	57122											
KHK	3795	broad.mit.edu	37	chr2	27315015	27315015	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagcctgggctggggaggtaGacaccgctctcagccaagct	14	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27315015	A	A	27315015	1	1	54	0	1	0	0	0	0	0	0	0	8219	957	33	4		4	KHK	2	27315015	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	780849	27315015	215884358	529	57123											
EIF2B4	8890	broad.mit.edu	37	chr2	27591875	27591875	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatgaagggaagatacctGagggggtttctccagctgtg	14	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27591875	A	A	27591875	3	1	54	1	0	0	0	0	1	0	0	0	5043	1294	45	4	1195	4	EIF2B4	2	27591875	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	276860	27591875	215607498	530	57124											
FNDC4	64838	broad.mit.edu	37	chr2	27716859	27716859	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagttcggaagtgcacccggGgccctgggggactctctccc	15	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27716859	C	C	27716859	3	2	54	1	0	0	0	0	1	0	0	0	6029	1232	43	4	328	4	FNDC4	2	27716859	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	124984	27716859	215482514	531	57125											
GCKR	2646	broad.mit.edu	37	chr2	27745528	27745528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtgtgtcaggaagtttGttcggcactgggtttacaaa	12	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27745528	T	T	27745528	1	4	54	0	1	0	0	0	0	0	0	0	6356	1392	48	3		3	GCKR	2	27745528	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28669	27745528	215453845	532	57126											
BRE	9577	broad.mit.edu	37	chr2	28422529	28422529	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcgtgttgaccctttaGttggcagtaaggcaagtgag	15	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28422529	C	C	28422529	1	2	54	0	1	0	0	0	0	0	0	0	1518	1044	36	4		4	BRE	2	28422529	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	677001	28422529	214776844	533	57127											
FAM179A	165186	broad.mit.edu	37	chr2	29266513	29266513	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagccacatctctgaaaaaTgcattttgttacttgcccaa	5	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29266513	C	C	29266513	1	2	54	0	1	0	0	0	0	0	0	0	5550	1479	51	5		5	FAM179A	2	29266513	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	843984	29266513	213932860	534	57128											
CLIP4	79745	broad.mit.edu	37	chr2	29375545	29375545	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactaaaattctgcattctcCcttaggtatttttgcacctc	4	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29375545	T	T	29375545	1	4	54	0	1	0	0	0	0	0	0	0	3567	638	22	4		4	CLIP4	2	29375545	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	109032	29375545	213823828	535	57129											
ALK	238	broad.mit.edu	37	chr2	29606490	29606490	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagcacccagcccactctaGacttttcttcataagtgtgc	6	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29606490	T	T	29606490	1	4	54	0	1	0	0	0	0	0	0	0	525	957	33	3		3	ALK	2	29606490	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	230945	29606490	213592883	536	57130											
ALK	238	broad.mit.edu	37	chr2	29745232	29745232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatgctgagaccagagaGtaagcatcaagtgattcttc	9	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29745232	T	T	29745232	1	4	54	0	1	0	0	0	0	0	0	0	525	1044	36	3		3	ALK	2	29745232	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	138742	29745232	213454141	537	57131											
ALK	238	broad.mit.edu	37	chr2	29751157	29751157	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagccctggagagtgtctccTatagccctacacgccaccca	9	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29751157	C	C	29751157	1	2	54	0	1	0	0	0	0	0	0	0	525	1537	53	5		5	ALK	2	29751157	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5925	29751157	213448216	538	57132											
ALK	238	broad.mit.edu	37	chr2	29981423	29981423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagaccaagttcccttgGcctactttctggatctcatc	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29981423	T	T	29981423	1	4	54	0	1	0	0	0	0	0	0	0	525	1218	42	3		3	ALK	2	29981423	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	230266	29981423	213217950	539	57133											
ALK	238	broad.mit.edu	37	chr2	30061487	30061487	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgatcgagtcaacaatgtGtatgtatctttcagatatta	7	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30061487	A	A	30061487	1	1	54	0	1	0	0	0	0	0	0	0	525	1392	48	4		4	ALK	2	30061487	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	80064	30061487	213137886	540	57134											
ALK	238	broad.mit.edu	37	chr2	30107768	30107768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagaaatggccacaaaGcacatttatgagtaacgaac	8	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30107768	T	T	30107768	1	4	54	0	1	0	0	0	0	0	0	0	525	986	34	3		3	ALK	2	30107768	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46281	30107768	213091605	541	57135											
ALK	238	broad.mit.edu	37	chr2	30124113	30124113	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgagaatgtctgtaaagTgcctggcatgtaatagatgt	12	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30124113	A	A	30124113	1	1	54	0	1	0	0	0	0	0	0	0	525	1711	59	5		5	ALK	2	30124113	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	16345	30124113	213075260	542	57136											
CAPN13	92291	broad.mit.edu	37	chr2	30993164	30993164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactctgggctgatgggtggCggggttgtacttacttggca	16	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30993164	T	T	30993164	1	4	54	0	1	0	0	0	0	0	0	0	2652	783	27	4		4	CAPN13	2	30993164	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	869051	30993164	212206209	543	57137											
GALNT14	79623	broad.mit.edu	37	chr2	31151389	31151389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctcctcatctgtaaacCaggagtcattacgcccattc	6	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31151389	A	A	31151389	1	1	54	0	1	0	0	0	0	0	0	0	6274	609	21	2		2	GALNT14	2	31151389	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	158225	31151389	212047984	544	57138											
GALNT14	79623	broad.mit.edu	37	chr2	31160551	31160551	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacttttaagggctcaagtGtttaaattgggtccactcag	9	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31160551	A	A	31160551	1	1	54	0	1	0	0	0	0	0	0	0	6274	1392	48	4		4	GALNT14	2	31160551	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9162	31160551	212038822	545	57139											
GALNT14	79623	broad.mit.edu	37	chr2	31219303	31219303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagccaggtgggaagggacGctggaactggggcctgccta	17	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31219303	T	T	31219303	1	4	54	0	1	0	0	0	0	0	0	0	6274	1102	38	3		3	GALNT14	2	31219303	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	58752	31219303	211980070	546	57140											
XDH	7498	broad.mit.edu	37	chr2	31589627	31589627	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatgacactcgagtaccctCtggaccagcccacatctccc	6	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31589627	T	T	31589627	1	4	54	0	1	0	0	0	0	0	0	0	17553	928	32	4		4	XDH	2	31589627	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	370324	31589627	211609746	547	57141											
SLC30A6	55676	broad.mit.edu	37	chr2	32422592	32422592	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtcagattgttattctcCctttactttttaattgatac	5	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32422592	T	T	32422592	1	4	54	0	1	0	0	0	0	0	0	0	14673	638	22	4		4	SLC30A6	2	32422592	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	832965	32422592	210776781	548	57142											
BIRC6	57448	broad.mit.edu	37	chr2	32692568	32692568	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaattgatatatttttggtCaactgtttcttctttctctc	4	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32692568	T	T	32692568	1	4	54	0	1	0	0	0	0	0	0	0	1444	841	29	4		4	BIRC6	2	32692568	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	269976	32692568	210506805	549	57143											
LTBP1	4052	broad.mit.edu	37	chr2	33572688	33572688	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaagcagccagatgtccTgacacagtgctgtctctgga	11	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33572688	A	A	33572688	1	1	54	0	1	0	0	0	0	0	0	0	9160	1595	55	5		5	LTBP1	2	33572688	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	880120	33572688	209626685	550	57144											
RASGRP3	25780	broad.mit.edu	37	chr2	33733029	33733030	+	Intron	DNP	AG	TT	TT													agatgatggttgtctaaaccAgcatgtgtccatggagaagg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	33733030	TT	TT	33733029	1	4	54	0	1	0	0	0	0	0	0	0	13184	203	7	5		5	RASGRP3	2	33733029	Intron	DNP	AG	TCGA-17-Z022-01A-01W-0746-08	160341	33733029	209466344	551	57145											
RASGRP3	25780	broad.mit.edu	37	chr2	33745848	33745848	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgagtccatcccactcctGaatccaggtttgcttctgtg	8	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33745848	T	T	33745848	1	4	54	0	1	0	0	0	0	0	0	0	13184	1305	45	3		3	RASGRP3	2	33745848	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12819	33745848	209453525	552	57146											
FAM98A	25940	broad.mit.edu	37	chr2	33824397	33824397	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaatccacagctggcgCctcagctcccgcactgcgca	8	18	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33824397	A	A	33824397	1	1	54	0	1	0	0	0	0	0	0	0	5713	754	26	3		3	FAM98A	2	33824397	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	78549	33824397	209374976	553	57147											
CRIM1	51232	broad.mit.edu	37	chr2	36696410	36696410	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcaacttcagggggttaTgaagtaagttcagagaaagg	13	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36696410	C	C	36696410	1	2	54	0	1	0	0	0	0	0	0	0	3905	1479	51	5		5	CRIM1	2	36696410	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2872013	36696410	206502963	554	57148											
VIT	5212	broad.mit.edu	37	chr2	37002618	37002618	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcacataacctgatttgCatcttcaattttttactgcc	6	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37002618	A	A	37002618	1	1	54	0	1	0	0	0	0	0	0	0	17298	725	25	3		3	VIT	2	37002618	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	306208	37002618	206196755	555	57149											
CEBPZ	10153	broad.mit.edu	37	chr2	37455779	37455779	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatattcattgctgtactccAgatcataccatttgcctcca	4	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37455779	G	G	37455779	3	3	54	1	0	0	0	0	1	0	0	0	3234	188	7	5	2667	5	CEBPZ	2	37455779	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	453161	37455779	205743594	556	57150											
PRKD3	23683	broad.mit.edu	37	chr2	37496827	37496827	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatctggtaaacagtactgaTatcctggtaggataaagtaa	10	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37496827	C	C	37496827	3	2	54	1	0	0	0	0	1	0	0	0	12626	1406	49	5	992	5	PRKD3	2	37496827	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	41048	37496827	205702546	557	57151											
SOS1	6654	broad.mit.edu	37	chr2	39222289	39222290	+	Missense_Mutation	DNP	GG	AT	AT													tgaaaagggctcgaatgatcGgaatcaaatacactgcaaac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	39222290	AT	AT	39222289	3	1	54	1	0	0	0	0	1	0	0	0	15050	1103	39	4	696	4	SOS1	2	39222289	Missense_Mutation	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	1725462	39222289	203977084	558	57152											
SLC8A1	6546	broad.mit.edu	37	chr2	40449543	40449543	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattaaagacttcagcataaGacctaaaaccataaaaaccc	4	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40449543	A	A	40449543	1	1	54	0	1	0	0	0	0	0	0	0	14820	957	33	4		4	SLC8A1	2	40449543	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1227254	40449543	202749830	559	57153											
SLC8A1	6546	broad.mit.edu	37	chr2	40666583	40666583	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagggggcagcccctactCtttttcttcatttcaactca	6	12	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40666583	A	A	40666583	1	1	54	0	1	0	0	0	0	0	0	0	14820	928	32	3		3	SLC8A1	2	40666583	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	217040	40666583	202532790	560	57154											
ABCG8	64241	broad.mit.edu	37	chr2	44102563	44102563	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggacaggtaaggcctgCccccggggcctgggccagct	16	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44102563	T	T	44102563	1	4	54	0	1	0	0	0	0	0	0	0	72	754	26	4		4	ABCG8	2	44102563	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3435980	44102563	199096810	561	57155											
C2orf34	79823	broad.mit.edu	37	chr2	44599730	44599730	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcagtaggagatatatctGaattatctaatctgtcatta	6	6	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44599730	C	C	44599730	1	2	54	0	1	0	0	0	0	0	0	0	2185	1305	45	4		4	C2orf34	2	44599730	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	497167	44599730	198599643	562	57156											
C2orf34	79823	broad.mit.edu	37	chr2	44893078	44893078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattttgtcctttaaaggtGgccaaatcactcacccgtca	6	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44893078	T	T	44893078	1	4	54	0	1	0	0	0	0	0	0	0	2185	1363	47	2		2	C2orf34	2	44893078	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	293348	44893078	198306295	563	57157											
C2orf34	79823	broad.mit.edu	37	chr2	44981122	44981122	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatgtgtaattagccttgtActtatctccattagtatcat	5	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44981122	T	T	44981122	1	4	54	0	1	0	0	0	0	0	0	0	2185	406	14	5		5	C2orf34	2	44981122	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	88044	44981122	198218251	564	57158											
PRKCE	5581	broad.mit.edu	37	chr2	46075912	46075912	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaggcaccctagacttgcAggatgaaagcattagagaac	10	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46075912	T	T	46075912	1	4	54	0	1	0	0	0	0	0	0	0	12617	203	7	5		5	PRKCE	2	46075912	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1094790	46075912	197123461	565	57159											
PRKCE	5581	broad.mit.edu	37	chr2	46098940	46098940	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgagactgccccagagagGagagacagccttctttcccc	10	15	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46098940	C	C	46098940	1	2	54	0	1	0	0	0	0	0	0	0	12617	1189	41	4		4	PRKCE	2	46098940	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23028	46098940	197100433	566	57160											
PRKCE	5581	broad.mit.edu	37	chr2	46246077	46246077	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgatgttagcagtgaAtggaccgcatgctctgccca	11	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46246077	G	G	46246077	1	3	54	0	1	0	0	0	0	0	0	0	12617	116	4	5		5	PRKCE	2	46246077	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	147137	46246077	196953296	567	57161											
TTC7A	57217	broad.mit.edu	37	chr2	47229731	47229731	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agccagggaggagggagcagGacagctgggggtgctgggaa	22	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47229731	T	T	47229731	1	4	54	0	1	0	0	0	0	0	0	0	16838	1189	41	3		3	TTC7A	2	47229731	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	983654	47229731	195969642	568	57162											
MSH2	4436	broad.mit.edu	37	chr2	47818186	47818186	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaaggagtcctcctgtcccAggtctttggcaccaaatgtc	10	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47818186	T	T	47818186	1	4	54	0	1	0	0	0	0	0	0	0	9964	203	7	5		5	MSH2	2	47818186	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	588455	47818186	195381187	569	57163											
FSHR	2492	broad.mit.edu	37	chr2	49293797	49293797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgagttactgagccagctGctgtggttcttggattgttg	14	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49293797	T	T	49293797	1	4	54	0	1	0	0	0	0	0	0	0	6133	1334	46	3		3	FSHR	2	49293797	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1475611	49293797	193905576	570	57164											
FSHR	2492	broad.mit.edu	37	chr2	49295667	49295667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacaaaaaatttacccagGgtcacatggctgatacatga	8	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49295667	T	T	49295667	1	4	54	0	1	0	0	0	0	0	0	0	6133	1247	43	2		2	FSHR	2	49295667	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1870	49295667	193903706	571	57165											
NRXN1	9378	broad.mit.edu	37	chr2	50731522	50731522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgggttaaagggacactGtgtatgtaacttaccctcaa	9	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50731522	T	T	50731522	1	4	54	0	1	0	0	0	0	0	0	0	10760	1392	48	3		3	NRXN1	2	50731522	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1435855	50731522	192467851	572	57166											
NRXN1	9378	broad.mit.edu	37	chr2	51001026	51001026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcactttttcattcaccCacaagcaacacaaggactgc	4	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51001026	A	A	51001026	1	1	54	0	1	0	0	0	0	0	0	0	10760	609	21	2		2	NRXN1	2	51001026	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	269504	51001026	192198347	573	57167											
NRXN1	9378	broad.mit.edu	37	chr2	51254928	51254928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagcgccgcggcgcgcaGttccgggggcagccccccga	16	17	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51254928	T	T	51254928	3	4	54	1	0	0	0	0	1	0	0	0	10760	1020	36	3	4514	3	NRXN1	2	51254928	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	253902	51254928	191944445	574	57168											
ACYP2	98	broad.mit.edu	37	chr2	54401523	54401523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgattttgtatcctgagaCtttgctgaagttgcttatca	8	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54401523	A	A	54401523	1	1	54	0	1	0	0	0	0	0	0	0	229	580	20	3		3	ACYP2	2	54401523	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3146595	54401523	188797850	575	57169											
VRK2	7444	broad.mit.edu	37	chr2	58276044	58276044	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctggatgatatggaaggCaatcagtgggtactgggcaa	15	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58276044	A	A	58276044	2	1	54	1	0	0	0	0	0	0	0	1	17347	697	25	3		3	VRK2	2	58276044	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3874521	58276044	184923329	576	57170											
VRK2	7444	broad.mit.edu	37	chr2	58311278	58311278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgtagtaaaagtggtaaGtgttgctcatagatttgtat	10	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58311278	A	A	58311278	1	1	54	0	1	0	0	0	0	0	0	0	17347	1044	36	4		4	VRK2	2	58311278	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	35234	58311278	184888095	577	57171											
BCL11A	53335	broad.mit.edu	37	chr2	60731922	60731922	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaggtggaatatcaggtaCatatctgtccctgaaaatgc	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60731922	G	G	60731922	1	3	54	0	1	0	0	0	0	0	0	0	1368	493	17	4		4	BCL11A	2	60731922	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2420644	60731922	182467451	578	57172											
BCL11A	53335	broad.mit.edu	37	chr2	60737233	60737233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgccaccatcacttgcCtaaaatttgccttctgactg	5	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60737233	A	A	60737233	1	1	54	0	1	0	0	0	0	0	0	0	1368	696	24	2		2	BCL11A	2	60737233	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5311	60737233	182462140	579	57173											
REL	5966	broad.mit.edu	37	chr2	61128171	61128171	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaagaaaaaagaagtaaAagaagctattattacaagaa	8	2	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61128171	T	T	61128171	3	4	54	1	0	0	0	0	1	0	0	0	13323	14	1	5	361	5	REL	2	61128171	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	390938	61128171	182071202	580	57174											
USP34	9736	broad.mit.edu	37	chr2	61575121	61575121	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaagtccccagttcgtgtGatacaagactcctgagaccc	10	12	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61575121	C	C	61575121	3	2	54	1	0	0	0	0	1	0	0	0	17192	1280	45	4	8735	4	USP34	2	61575121	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	446950	61575121	181624252	581	57175											
C2orf86	51057	broad.mit.edu	37	chr2	63665148	63665148	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttaaaaaattttcatcaGtgaatcttcttttaggggta	6	4	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63665148	C	C	63665148	1	2	54	0	1	0	0	0	0	0	0	0	2223	1044	36	4		4	C2orf86	2	63665148	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2090027	63665148	179534225	582	57176											
PLEK	5341	broad.mit.edu	37	chr2	68608101	68608101	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaaacatagcagatcctGctccaaggcttgctttgacc	7	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68608101	T	T	68608101	1	4	54	0	1	0	0	0	0	0	0	0	12148	1334	46	3		3	PLEK	2	68608101	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4942953	68608101	174591272	583	57177											
PLEK	5341	broad.mit.edu	37	chr2	68608147	68608147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgttgtatccactctgcCaggtcaatactggcacttgg	10	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68608147	A	A	68608147	1	1	54	0	1	0	0	0	0	0	0	0	12148	609	21	2		2	PLEK	2	68608147	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	46	68608147	174591226	584	57178											
PLEK	5341	broad.mit.edu	37	chr2	68610778	68610778	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagtagggctgacggttcaTcagggggagcaaaatgggat	16	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68610778	A	A	68610778	1	1	54	0	1	0	0	0	0	0	0	0	12148	1450	50	5		5	PLEK	2	68610778	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2631	68610778	174588595	585	57179											
PLEK	5341	broad.mit.edu	37	chr2	68622716	68622716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcaatttccttagaacaCgaagaaaacagagatttcat	6	7	2	3	rs145846537	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68622716	A	A	68622716	1	1	54	0	1	0	0	0	0	0	0	0	12148	551	19	3		3	PLEK	2	68622716	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11938	68622716	174576657	586	57180											
PLEK	5341	broad.mit.edu	37	chr2	68623007	68623007	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggacaagctcagtccaGgacctgtccacttctgtgac	9	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68623007	T	T	68623007	1	4	54	0	1	0	0	0	0	0	0	0	12148	1015	35	2		2	PLEK	2	68623007	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	291	68623007	174576366	587	57181											
ANTXR1	84168	broad.mit.edu	37	chr2	69252275	69252275	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccttcaccaccacacccatCtttacctaggtgatgcctgc	5	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69252275	G	G	69252275	1	3	54	0	1	0	0	0	0	0	0	0	711	928	32	4		4	ANTXR1	2	69252275	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	629268	69252275	173947098	588	57182											
ANTXR1	84168	broad.mit.edu	37	chr2	69468959	69468959	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcagagagacagcattaGactactaaacacaatgcgcc	8	12	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69468959	T	T	69468959	1	4	54	0	1	0	0	0	0	0	0	0	711	957	33	3		3	ANTXR1	2	69468959	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	216684	69468959	173730414	589	57183											
AAK1	22848	broad.mit.edu	37	chr2	69771620	69771620	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catacatcaccgctactcacGttgttgatactagaatcaat	5	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69771620	C	C	69771620	3	2	54	1	0	0	0	0	1	0	0	0	16	1136	40	4	2622	4	AAK1	2	69771620	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	302661	69771620	173427753	590	57184											
ADD2	119	broad.mit.edu	37	chr2	70847294	70847294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagaagcagacaacctggGgccggccagacagaggattc	13	10	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70847294	T	T	70847294	1	4	54	0	1	0	0	0	0	0	0	0	305	1247	43	2		2	ADD2	2	70847294	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1075674	70847294	172352079	591	57185											
ADD2	119	broad.mit.edu	37	chr2	70980546	70980547	+	Intron	DNP	GG	CT	CT													gagaacataaagggagaaatGggaggaggggggaaggaaga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	70980547	CT	CT	70980546	1	2	54	0	1	0	0	0	0	0	0	0	305	1363	47	4		4	ADD2	2	70980546	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	133252	70980546	172218827	592	57186											
NAGK	55577	broad.mit.edu	37	chr2	71302930	71302930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtggtggtgggccttggGgtggaggcagaagggcacgt	22	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71302930	T	T	71302930	1	4	54	0	1	0	0	0	0	0	0	0	10236	1247	43	2		2	NAGK	2	71302930	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	322384	71302930	171896443	593	57187											
PAIP2B	400961	broad.mit.edu	37	chr2	71415647	71415647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaactccttggcatctgGgttcaggttacttttgctct	8	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71415647	T	T	71415647	3	4	54	1	0	0	0	0	1	0	0	0	11492	1232	43	2	41	2	PAIP2B	2	71415647	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	112717	71415647	171783726	594	57188											
DYSF	8291	broad.mit.edu	37	chr2	71781014	71781014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctactgggaggacatcagcCatagaatcgagactcagaac	10	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71781014	A	A	71781014	3	1	54	1	0	0	0	0	1	0	0	0	4899	594	21	2	2282	2	DYSF	2	71781014	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	365367	71781014	171418359	595	57189											
EXOC6B	23233	broad.mit.edu	37	chr2	72503300	72503300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctcatgggagaagggCctccactttgggggtagact	15	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72503300	A	A	72503300	1	1	54	0	1	0	0	0	0	0	0	0	5351	754	26	3		3	EXOC6B	2	72503300	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	722286	72503300	170696073	596	57190											
EXOC6B	23233	broad.mit.edu	37	chr2	72962079	72962079	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggctgcccttcaaatatcTgaagagctatcagaagtaaa	8	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72962079	A	A	72962079	1	1	54	0	1	0	0	0	0	0	0	0	5351	1595	55	5		5	EXOC6B	2	72962079	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	458779	72962079	170237294	597	57191											
ALMS1	7840	broad.mit.edu	37	chr2	73799765	73799765	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagggatcagaaggtcacCccagagcaaacaactcagca	9	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73799765	T	T	73799765	2	4	54	1	0	0	0	0	0	0	0	1	535	610	22	4		4	ALMS1	2	73799765	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	837686	73799765	169399608	598	57192											
C2orf65	130951	broad.mit.edu	37	chr2	74803408	74803408	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccatctgcacatttggccTccacatgctgagtagcctgt	8	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74803408	A	A	74803408	1	1	54	0	1	0	0	0	0	0	0	0	2206	1566	54	5		5	C2orf65	2	74803408	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1003643	74803408	168395965	599	57193											
HK2	3099	broad.mit.edu	37	chr2	75094966	75094967	+	Intron	DEL	TC	-	-													aaaaaacttccttggcatgtTctttctgtactttctccagc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75094967	-	-	75094966	6	5	54	0	1	1	0	1	0	0	0	0	7258	1798	62	0		0	HK2	2	75094966	Intron	DEL	TC	TCGA-17-Z022-01A-01W-0746-08	291558	75094966	168104407	600	57194											
LRRTM4	80059	broad.mit.edu	37	chr2	76998031	76998031	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctacatgttccaagagttcAagttagccttttctctgtaa	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76998031	T	T	76998031	1	4	54	0	1	0	0	0	0	0	0	0	9129	145	5	5		5	LRRTM4	2	76998031	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1903065	76998031	166201342	601	57195											
LRRTM4	80059	broad.mit.edu	37	chr2	77598548	77598548	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctcaaaatttcagaacTgtcccctttcctcaaatttt	2	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77598548	C	C	77598548	1	2	54	0	1	0	0	0	0	0	0	0	9129	1595	55	5		5	LRRTM4	2	77598548	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	600517	77598548	165600825	602	57196											
CTNNA2	1496	broad.mit.edu	37	chr2	79494922	79494922	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggggaattgtcttgtgactCttgttttaatgtcctggaaa	11	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79494922	A	A	79494922	1	1	54	0	1	0	0	0	0	0	0	0	4047	928	32	3		3	CTNNA2	2	79494922	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1896374	79494922	163704451	603	57197											
CTNNA2	1496	broad.mit.edu	37	chr2	79788510	79788510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaataatgctactatgagCattagtacacaagttttctt	6	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79788510	A	A	79788510	1	1	54	0	1	0	0	0	0	0	0	0	4047	725	25	3		3	CTNNA2	2	79788510	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	293588	79788510	163410863	604	57198											
CTNNA2	1496	broad.mit.edu	37	chr2	79982893	79982893	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgttatcaacatcattttaAttagttaggtctctttgcca	5	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79982893	C	C	79982893	1	2	54	0	1	0	0	0	0	0	0	0	4047	116	4	5		5	CTNNA2	2	79982893	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	194383	79982893	163216480	605	57199											
CTNNA2	1496	broad.mit.edu	37	chr2	80217575	80217575	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagtcgcactgatacacgGtggctaagaaaactaacttt	11	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80217575	A	A	80217575	1	1	54	0	1	0	0	0	0	0	0	0	4047	1276	44	4		4	CTNNA2	2	80217575	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	234682	80217575	162981798	606	57200											
CTNNA2	1496	broad.mit.edu	37	chr2	80302270	80302270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccttttgtctgtcctgGgaaggtcatcagataggtat	11	8	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80302270	T	T	80302270	1	4	54	0	1	0	0	0	0	0	0	0	4047	1247	43	2		2	CTNNA2	2	80302270	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	84695	80302270	162897103	607	57201											
CTNNA2	1496	broad.mit.edu	37	chr2	80323940	80323940	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaagtctgttttatcagaGactaggattgcaacccctgc	8	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80323940	C	C	80323940	1	2	54	0	1	0	0	0	0	0	0	0	4047	957	33	4		4	CTNNA2	2	80323940	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21670	80323940	162875433	608	57202											
CTNNA2	1496	broad.mit.edu	37	chr2	80333483	80333483	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcttttttgaaacaagaacTcaaggtgcaacgttacaagt	8	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80333483	A	A	80333483	1	1	54	0	1	0	0	0	0	0	0	0	4047	1566	54	5		5	CTNNA2	2	80333483	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	9543	80333483	162865890	609	57203											
CTNNA2	1496	broad.mit.edu	37	chr2	80361454	80361454	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagggaggaggcagggatGagacaaatggaaccaaggcc	18	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80361454	T	T	80361454	1	4	54	0	1	0	0	0	0	0	0	0	4047	1305	45	3		3	CTNNA2	2	80361454	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27971	80361454	162837919	610	57204											
CTNNA2	1496	broad.mit.edu	37	chr2	80608166	80608166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttccaagtgtgagggaatGccccaagagatagtactagt	13	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80608166	T	T	80608166	1	4	54	0	1	0	0	0	0	0	0	0	4047	1334	46	3		3	CTNNA2	2	80608166	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	246712	80608166	162591207	611	57205											
CTNNA2	1496	broad.mit.edu	37	chr2	80686807	80686807	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacaccccacacagacatAcacttgattttgcttccttt	5	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80686807	T	T	80686807	1	4	54	0	1	0	0	0	0	0	0	0	4047	406	14	5		5	CTNNA2	2	80686807	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	78641	80686807	162512566	612	57206											
CTNNA2	1496	broad.mit.edu	37	chr2	80812060	80812060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagttaatgggacaactaCctcaattttccaattcactt	5	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80812060	A	A	80812060	1	1	54	0	1	0	0	0	0	0	0	0	4047	522	18	3		3	CTNNA2	2	80812060	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	125253	80812060	162387313	613	57207											
KCMF1	56888	broad.mit.edu	37	chr2	85262310	85262310	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaaccttatgactaaaatGatgttgtaaagtatattatt	6	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85262310	T	T	85262310	1	4	54	0	1	0	0	0	0	0	0	0	8070	1305	45	3		3	KCMF1	2	85262310	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4450250	85262310	157937063	614	57208											
TCF7L1	83439	broad.mit.edu	37	chr2	85454827	85454827	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccatcctccttataagctCtggattctgggctgggcaca	9	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85454827	G	G	85454827	1	3	54	0	1	0	0	0	0	0	0	0	15819	928	32	4		4	TCF7L1	2	85454827	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	192517	85454827	157744546	615	57209											
RETSAT	54884	broad.mit.edu	37	chr2	85570899	85570899	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaactggttggtgagtgggGatcctgcagtcacactctcc	13	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85570899	A	A	85570899	3	1	54	1	0	0	0	0	1	0	0	0	13346	1174	41	4	284	4	RETSAT	2	85570899	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	116072	85570899	157628474	616	57210											
CD8A	925	broad.mit.edu	37	chr2	87013080	87013080	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaggctgggcttgtctcccGatttgaccacaggcctgaaa	11	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87013080	T	T	87013080	4	4	54	1	0	0	0	0	0	1	0	0	3074	1059	37	3	40	3	CD8A	2	87013080	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1442181	87013080	156186293	617	57211											
RMND5A	64795	broad.mit.edu	37	chr2	87056588	87056588	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaattagggaaaaaggagtCaggctggggggagtcaggcg	18	5	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87056588	T	T	87056588	1	4	54	0	1	0	0	0	0	0	0	0	13508	841	29	4		4	RMND5A	2	87056588	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43508	87056588	156142785	618	57212											
EIF2AK3	9451	broad.mit.edu	37	chr2	88892738	88892738	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaatctgataaattttggTattaggtgtatttctaaata	7	2	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88892738	A	A	88892738	1	1	54	0	1	0	0	0	0	0	0	0	5038	1653	57	5		5	EIF2AK3	2	88892738	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1836150	88892738	154306635	619	57213											
SNRNP200	23020	broad.mit.edu	37	chr2	96963959	96963959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacatgaatttagcttcaTgctgcaatcttctagccacc	5	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96963959	C	C	96963959	1	2	54	0	1	0	0	0	0	0	0	0	14966	1479	51	5		5	SNRNP200	2	96963959	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	8071221	96963959	146235414	620	57214											
SNRNP200	23020	broad.mit.edu	37	chr2	96964878	96964878	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcacaccagactaagatttCatcaacatacatctttggga	6	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96964878	T	T	96964878	1	4	54	0	1	0	0	0	0	0	0	0	14966	841	29	4		4	SNRNP200	2	96964878	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	919	96964878	146234495	621	57215											
SNRNP200	23020	broad.mit.edu	37	chr2	96967162	96967162	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaacagattatgggaactCactgacattaaggtttttaa	8	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96967162	G	G	96967162	1	3	54	0	1	0	0	0	0	0	0	0	14966	841	29	4		4	SNRNP200	2	96967162	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2284	96967162	146232211	622	57216											
SNRNP200	23020	broad.mit.edu	37	chr2	96967309	96967309	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catagtctgtgatctttttgCccaggttcactagcacatgg	9	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96967309	G	G	96967309	3	3	54	1	0	0	0	0	1	0	0	0	14966	739	26	4	6051	4	SNRNP200	2	96967309	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	147	96967309	146232064	623	57217											
SNRNP200	23020	broad.mit.edu	37	chr2	96971183	96971183	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacatccgccatggccgcgGctgctcggaggcttcagacc	12	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96971183	A	A	96971183	1	1	54	0	1	0	0	0	0	0	0	0	14966	1218	42	4		4	SNRNP200	2	96971183	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3874	96971183	146228190	624	57218											
ANKRD36	375248	broad.mit.edu	37	chr2	97879508	97879508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcttgggtgacgctgatGctgctggtcttggacatgat	14	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97879508	T	T	97879508	1	4	54	0	1	0	0	0	0	0	0	0	665	1334	46	3		3	ANKRD36	2	97879508	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	908325	97879508	145319865	625	57219											
ANKRD36	375248	broad.mit.edu	37	chr2	97882997	97882997	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgcatagcctatgaaataTatattatgtattgactattt	5	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97882997	C	C	97882997	1	2	54	0	1	0	0	0	0	0	0	0	665	1421	49	5		5	ANKRD36	2	97882997	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3489	97882997	145316376	626	57220											
TMEM131	23505	broad.mit.edu	37	chr2	98413727	98413727	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttttggacaaagtgaattCaaactatttcataagttaga	7	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98413727	G	G	98413727	1	3	54	0	1	0	0	0	0	0	0	0	16167	841	29	4		4	TMEM131	2	98413727	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	530730	98413727	144785646	627	57221											
VWA3B	200403	broad.mit.edu	37	chr2	98784141	98784141	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacatctgcaaagggtccCcctcaagaattcatttgaat	7	11	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98784141	T	T	98784141	1	4	54	0	1	0	0	0	0	0	0	0	17368	638	22	4		4	VWA3B	2	98784141	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	370414	98784141	144415232	628	57222											
VWA3B	200403	broad.mit.edu	37	chr2	98797401	98797401	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaataaagaacacgttccaAgttggtcaatattaagttgg	8	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98797401	T	T	98797401	1	4	54	0	1	0	0	0	0	0	0	0	17368	87	3	5		5	VWA3B	2	98797401	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	13260	98797401	144401972	629	57223											
CNGA3	1261	broad.mit.edu	37	chr2	99012830	99012830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccattgtgggcaatgtGggctccatgatctcgaatat	11	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99012830	T	T	99012830	2	4	54	1	0	0	0	0	0	0	0	1	3630	1335	47	2		2	CNGA3	2	99012830	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	215429	99012830	144186543	630	57224											
AFF3	3899	broad.mit.edu	37	chr2	100454117	100454117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgaggggatgcctgacCtgggactggcagacaggctc	17	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100454117	A	A	100454117	1	1	54	0	1	0	0	0	0	0	0	0	358	696	24	2		2	AFF3	2	100454117	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1441287	100454117	142745256	631	57225											
PDCL3	79031	broad.mit.edu	37	chr2	101179519	101179519	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggtttgagcaactgaaCtggaaacaagatgcaggtga	13	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101179519	A	A	101179519	1	1	54	1	0	0	0	0	0	0	0	0	11722	580	20	3		3	PDCL3	2	101179519	Translation_Start_Site	SNP	C	TCGA-17-Z022-01A-01W-0746-08	725402	101179519	142019854	632	57226											
TBC1D8	11138	broad.mit.edu	37	chr2	101667121	101667121	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taactgtaagagaaaagggtGaaatacctattatgccatga	9	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101667121	A	A	101667121	1	1	54	0	1	0	0	0	0	0	0	0	15747	1305	45	4		4	TBC1D8	2	101667121	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	487602	101667121	141532252	633	57227											
IL1R1	3554	broad.mit.edu	37	chr2	102794103	102794103	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaacaaagggattctccagGattccaaagttttgaagtca	9	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102794103	A	A	102794103	1	1	54	0	1	0	0	0	0	0	0	0	7728	1189	41	4		4	IL1R1	2	102794103	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1126982	102794103	140405270	634	57228											
IL1RL1	9173	broad.mit.edu	37	chr2	102957235	102957235	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtaaatttatacacaAtgaaaatggagccaattata	5	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102957235	T	T	102957235	3	4	54	1	0	0	0	0	1	0	0	0	7733	101	4	5	571	5	IL1RL1	2	102957235	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	163132	102957235	140242138	635	57229											
IL18RAP	8807	broad.mit.edu	37	chr2	103040329	103040329	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggagtgaagaggaatttgtCttattttgtgatttaccaga	11	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103040329	A	A	103040329	2	1	54	1	0	0	0	0	0	0	0	1	7718	900	32	3		3	IL18RAP	2	103040329	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	83094	103040329	140159044	636	57230											
SLC9A4	389015	broad.mit.edu	37	chr2	103095305	103095305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgttctgcaggcttccaCctctaccacaggctgccagg	10	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103095305	A	A	103095305	3	1	54	1	0	0	0	0	1	0	0	0	14830	506	18	3	270	3	SLC9A4	2	103095305	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	54976	103095305	140104068	637	57231											
SULT1C3	442038	broad.mit.edu	37	chr2	108881581	108881581	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccagcagcaccactgtacAacctttgagaggcaagttgc	9	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108881581	T	T	108881581	1	4	54	0	1	0	0	0	0	0	0	0	15496	145	5	5		5	SULT1C3	2	108881581	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	5786276	108881581	134317792	638	57232											
SH3RF3	344558	broad.mit.edu	37	chr2	109867961	109867961	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggtggcagacatgtccaAggaatattgtggtcatttgg	13	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109867961	C	C	109867961	1	2	54	0	1	0	0	0	0	0	0	0	14373	87	3	5		5	SH3RF3	2	109867961	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	986380	109867961	133331412	639	57233											
SH3RF3	344558	broad.mit.edu	37	chr2	110057158	110057158	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccaggtggaggagccccgAggatgtggagatcagagttt	16	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110057158	T	T	110057158	1	4	54	0	1	0	0	0	0	0	0	0	14373	319	11	5		5	SH3RF3	2	110057158	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	189197	110057158	133142215	640	57234											
MERTK	10461	broad.mit.edu	37	chr2	112725609	112725609	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtttccctttactaatctCaaggaacgaaaacaggtatt	6	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112725609	G	G	112725609	1	3	54	0	1	0	0	0	0	0	0	0	9572	841	29	4		4	MERTK	2	112725609	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2668451	112725609	130473764	641	57235											
IL1F8	27177	broad.mit.edu	37	chr2	113786647	113786647	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctctacaggctattaaatGaagagtgactggaaacacaa	9	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113786647	A	A	113786647	3	1	54	1	0	0	0	0	1	0	0	0	7726	1290	45	4	593	4	IL1F8	2	113786647	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1061038	113786647	129412726	642	57236											
IL1F8	27177	broad.mit.edu	37	chr2	113788844	113788844	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagagagtctcattgctctGagaagtagtggctataacga	13	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113788844	A	A	113788844	1	1	54	0	1	0	0	0	0	0	0	0	7726	1305	45	4		4	IL1F8	2	113788844	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2197	113788844	129410529	643	57237											
PSD4	23550	broad.mit.edu	37	chr2	113951400	113951400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattctattgggatggggtGtgtgctcgagtcatcccact	12	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113951400	T	T	113951400	1	4	54	0	1	0	0	0	0	0	0	0	12755	1392	48	3		3	PSD4	2	113951400	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	162556	113951400	129247973	644	57238											
ACTR3	10096	broad.mit.edu	37	chr2	114684900	114684900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaataagatttaatttgtAtttccctttttgttttaata	3	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114684900	T	T	114684900	1	4	54	0	1	0	0	0	0	0	0	0	212	464	16	5		5	ACTR3	2	114684900	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	733500	114684900	128514473	645	57239											
DPP10	57628	broad.mit.edu	37	chr2	115689085	115689085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggactgcactgagccaggcCaagtcattcctggggtgtcc	13	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115689085	A	A	115689085	1	1	54	0	1	0	0	0	0	0	0	0	4767	609	21	2		2	DPP10	2	115689085	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1004185	115689085	127510288	646	57240											
DPP10	57628	broad.mit.edu	37	chr2	115790981	115790981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctttctccatctttaGtggctccttttgctcagcca	6	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115790981	T	T	115790981	1	4	54	0	1	0	0	0	0	0	0	0	4767	1044	36	3		3	DPP10	2	115790981	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	101896	115790981	127408392	647	57241											
DPP10	57628	broad.mit.edu	37	chr2	116105599	116105599	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacctttcctggggtagaggAatctggtttctattacttgc	10	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116105599	T	T	116105599	1	4	54	0	1	0	0	0	0	0	0	0	4767	261	9	5		5	DPP10	2	116105599	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	314618	116105599	127093774	648	57242											
DPP10	57628	broad.mit.edu	37	chr2	116171640	116171640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcctttagcttctcccGtctcttaatacaaacctgat	5	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116171640	T	T	116171640	1	4	54	0	1	0	0	0	0	0	0	0	4767	1160	40	3		3	DPP10	2	116171640	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	66041	116171640	127027733	649	57243											
DPP10	57628	broad.mit.edu	37	chr2	116283730	116283730	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtccaaacatcttccatatCtgcacagcaaataattggga	6	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116283730	T	T	116283730	1	4	54	0	1	0	0	0	0	0	0	0	4767	928	32	4		4	DPP10	2	116283730	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112090	116283730	126915643	650	57244											
DPP10	57628	broad.mit.edu	37	chr2	116599815	116599815	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatgaaggtcataacgtatCtgagaagagcaagtatcatc	10	6	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116599815	T	T	116599815	3	4	54	1	0	0	0	0	1	0	0	0	4767	913	32	4	2558	4	DPP10	2	116599815	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	316085	116599815	126599558	651	57245											
CCDC93	54520	broad.mit.edu	37	chr2	118705499	118705499	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggatggtctcgatctccTgacctcgtgatccgcctgcc	10	16	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118705499	A	A	118705499	1	1	54	0	1	0	0	0	0	0	0	0	2900	1595	55	5		5	CCDC93	2	118705499	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2105684	118705499	124493874	652	57246											
INSIG2	51141	broad.mit.edu	37	chr2	118859664	118859664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcctcttgtccctcagGcacttagattttggcgttgt	12	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118859664	T	T	118859664	1	4	54	0	1	0	0	0	0	0	0	0	7836	1218	42	3		3	INSIG2	2	118859664	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	154165	118859664	124339709	653	57247											
INSIG2	51141	broad.mit.edu	37	chr2	118861025	118861025	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttagtcagaagaagaatgtCaaccatattgttgaaacatc	7	7	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118861025	T	T	118861025	1	4	54	0	1	0	0	0	0	0	0	0	7836	841	29	4		4	INSIG2	2	118861025	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1361	118861025	124338348	654	57248											
C2orf76	130355	broad.mit.edu	37	chr2	120097797	120097797	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttctgaccagcagaaaactGacagagtacagaagatgaac	10	8	1	7			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120097797	A	A	120097797	1	1	54	0	1	0	0	0	0	0	0	0	2215	1305	45	4		4	C2orf76	2	120097797	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1236772	120097797	123101576	655	57249											
PTPN4	5775	broad.mit.edu	37	chr2	120567726	120567726	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtattagatgcatgctctcaTtcaaactgggtctttttaaa	7	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120567726	C	C	120567726	1	2	54	0	1	0	0	0	0	0	0	0	12898	1508	52	5		5	PTPN4	2	120567726	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	469929	120567726	122631647	656	57250											
CLASP1	23332	broad.mit.edu	37	chr2	122166658	122166658	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattgaaggatggggaaaaAgcatagagaattatgtcaga	12	2	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122166658	G	G	122166658	1	3	54	0	1	0	0	0	0	0	0	0	3485	87	3	5		5	CLASP1	2	122166658	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1598932	122166658	121032715	657	57251											
CNTNAP5	129684	broad.mit.edu	37	chr2	124810045	124810045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacgttattccctctcaacCaagggtcccaggatttaaag	7	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124810045	A	A	124810045	1	1	54	0	1	0	0	0	0	0	0	0	3682	609	21	2		2	CNTNAP5	2	124810045	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2643387	124810045	118389328	658	57252											
CNTNAP5	129684	broad.mit.edu	37	chr2	124979373	124979373	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actcacagcccagctcaactCaactggagagttggtaagta	9	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124979373	A	A	124979373	2	1	54	1	0	0	0	0	0	0	0	1	3682	813	29	3		3	CNTNAP5	2	124979373	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	169328	124979373	118220000	659	57253											
CNTNAP5	129684	broad.mit.edu	37	chr2	125021906	125021906	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggttgagagtgttcgagtAaacaatgcagtacccaaatc	10	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125021906	T	T	125021906	1	4	54	0	1	0	0	0	0	0	0	0	3682	377	13	5		5	CNTNAP5	2	125021906	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	42533	125021906	118177467	660	57254											
CNTNAP5	129684	broad.mit.edu	37	chr2	125105049	125105049	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accagggcagaaggacacgtCtgagagcactaggcgggcag	16	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125105049	T	T	125105049	1	4	54	0	1	0	0	0	0	0	0	0	3682	928	32	4		4	CNTNAP5	2	125105049	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	83143	125105049	118094324	661	57255											
CNTNAP5	129684	broad.mit.edu	37	chr2	125141335	125141335	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actccatgaatcataactctCgggttacagcaaaagtgtat	7	9	2	1	rs142665597	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125141335	T	T	125141335	1	4	54	0	1	0	0	0	0	0	0	0	3682	899	31	4		4	CNTNAP5	2	125141335	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	36286	125141335	118058038	662	57256											
CNTNAP5	129684	broad.mit.edu	37	chr2	125142393	125142393	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaacccgcaaagtgaaaaGggccagggatgatctcagag	12	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125142393	C	C	125142393	1	2	54	0	1	0	0	0	0	0	0	0	3682	1015	35	4		4	CNTNAP5	2	125142393	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1058	125142393	118056980	663	57257											
CNTNAP5	129684	broad.mit.edu	37	chr2	125276353	125276353	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggtggatcacttgaggtCaggagttcaagaccagcctg	15	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125276353	A	A	125276353	1	1	54	0	1	0	0	0	0	0	0	0	3682	841	29	3		3	CNTNAP5	2	125276353	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	133960	125276353	117923020	664	57258											
CNTNAP5	129684	broad.mit.edu	37	chr2	125340119	125340119	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgcctacctgggctagCagctgggacacatccctgca	10	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125340119	G	G	125340119	1	3	54	0	1	0	0	0	0	0	0	0	3682	725	25	4		4	CNTNAP5	2	125340119	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	63766	125340119	117859254	665	57259											
CNTNAP5	129684	broad.mit.edu	37	chr2	125460703	125460703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctccctccctccctcCctgtctccctccctcccttc	1	27	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125460703	A	A	125460703	1	1	54	0	1	0	0	0	0	0	0	0	3682	638	22	2		2	CNTNAP5	2	125460703	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	120584	125460703	117738670	666	57260											
CNTNAP5	129684	broad.mit.edu	37	chr2	125470631	125470631	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttagagaagtggaggtcAcacacatttagaccacagca	9	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125470631	G	G	125470631	1	3	54	0	1	0	0	0	0	0	0	0	3682	174	6	5		5	CNTNAP5	2	125470631	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	9928	125470631	117728742	667	57261											
CNTNAP5	129684	broad.mit.edu	37	chr2	125470979	125470979	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccctctttttttgagataGagtcttgctctgtcacccag	7	12	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125470979	A	A	125470979	1	1	54	0	1	0	0	0	0	0	0	0	3682	957	33	4		4	CNTNAP5	2	125470979	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	348	125470979	117728394	668	57262											
CNTNAP5	129684	broad.mit.edu	37	chr2	125501441	125501441	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaaacctagccatagattCtaaaaaaatgccctgatttg	5	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125501441	T	T	125501441	1	4	54	0	1	0	0	0	0	0	0	0	3682	928	32	4		4	CNTNAP5	2	125501441	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	30462	125501441	117697932	669	57263											
CNTNAP5	129684	broad.mit.edu	37	chr2	125528841	125528841	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagcaattgtgaaggtgcCtagaaaaaaaggaatgccta	13	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125528841	T	T	125528841	1	4	54	0	1	0	0	0	0	0	0	0	3682	696	24	4		4	CNTNAP5	2	125528841	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	27400	125528841	117670532	670	57264											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530342	125530342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaatgagctaacaactcCctctatccttcctgttttcc	4	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530342	A	A	125530342	1	1	54	0	1	0	0	0	0	0	0	0	3682	638	22	2		2	CNTNAP5	2	125530342	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1501	125530342	117669031	671	57265											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530379	125530379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttccggtttcagctcCttcagagatcacctttgcca	6	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530379	A	A	125530379	3	1	54	1	0	0	0	0	1	0	0	0	3682	681	24	2	2600	2	CNTNAP5	2	125530379	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37	125530379	117668994	672	57266											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530474	125530474	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgacaaccaatggcactatGtccgggctgagaggaacctc	11	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530474	A	A	125530474	3	1	54	1	0	0	0	0	1	0	0	0	3682	1377	48	4	2695	4	CNTNAP5	2	125530474	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	95	125530474	117668899	673	57267											
CNTNAP5	129684	broad.mit.edu	37	chr2	125620946	125620946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtgatctgcacagtgaCtcgcccctaccagctcctgt	9	17	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125620946	A	A	125620946	1	1	54	0	1	0	0	0	0	0	0	0	3682	580	20	3		3	CNTNAP5	2	125620946	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	90472	125620946	117578427	674	57268											
CNTNAP5	129684	broad.mit.edu	37	chr2	125622900	125622900	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggaagcttacaggttcgcTatcacctaaacaaggaagaa	9	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125622900	A	A	125622900	3	1	54	1	0	0	0	0	1	0	0	0	3682	1522	53	5	3310	5	CNTNAP5	2	125622900	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1954	125622900	117576473	675	57269											
CNTNAP5	129684	broad.mit.edu	37	chr2	125623698	125623698	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatacaaaaattagccaGgtgtggtggcacgcacctat	9	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125623698	T	T	125623698	1	4	54	0	1	0	0	0	0	0	0	0	3682	1015	35	2		2	CNTNAP5	2	125623698	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	798	125623698	117575675	676	57270											
CNTNAP5	129684	broad.mit.edu	37	chr2	125641050	125641050	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtgggtagagtgcttctCaaaacatgagtgaaactttt	11	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125641050	T	T	125641050	1	4	54	0	1	0	0	0	0	0	0	0	3682	841	29	4		4	CNTNAP5	2	125641050	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17352	125641050	117558323	677	57271											
CNTNAP5	129684	broad.mit.edu	37	chr2	125655657	125655657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaagttttcaaactgtttGtcccttacctgaaagccaca	6	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125655657	T	T	125655657	1	4	54	0	1	0	0	0	0	0	0	0	3682	1392	48	3		3	CNTNAP5	2	125655657	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14607	125655657	117543716	678	57272											
PROC	5624	broad.mit.edu	37	chr2	128186270	128186270	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgcagcgaggtcatgagCaacatggtgtctgagaacat	14	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128186270	T	T	128186270	2	4	54	1	0	0	0	0	0	0	0	1	12651	709	25	4		4	PROC	2	128186270	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2530613	128186270	115013103	679	57273											
LIMS2	55679	broad.mit.edu	37	chr2	128436463	128436463	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagagaggtccattctccagCgtagatgcagaaggcttggt	13	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128436463	G	G	128436463	1	3	54	0	1	0	0	0	0	0	0	0	8876	783	27	4		4	LIMS2	2	128436463	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	250193	128436463	114762910	680	57274											
AMMECR1L	83607	broad.mit.edu	37	chr2	128631784	128631784	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccaacttgggctcgagtgGaggaacacaacgtctttttc	11	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128631784	A	A	128631784	3	1	54	1	0	0	0	0	1	0	0	0	579	1174	41	4	931	4	AMMECR1L	2	128631784	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	195321	128631784	114567589	681	57275											
SAP130	79595	broad.mit.edu	37	chr2	128747113	128747113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcttttctccaaaccacCttctatgcaaaaatttaaaa	1	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128747113	A	A	128747113	1	1	54	0	1	0	0	0	0	0	0	0	13942	696	24	2		2	SAP130	2	128747113	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	115329	128747113	114452260	682	57276											
UGGT1	56886	broad.mit.edu	37	chr2	128853221	128853221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataggtgcatgccaccatgCctggctgatttattaatttt	8	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128853221	T	T	128853221	1	4	54	0	1	0	0	0	0	0	0	0	17067	754	26	4		4	UGGT1	2	128853221	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	106108	128853221	114346152	683	57277											
UGGT1	56886	broad.mit.edu	37	chr2	128922461	128922461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactcttatgtttgctttaCctcagctccttcatttttcc	3	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128922461	A	A	128922461	1	1	54	0	1	0	0	0	0	0	0	0	17067	522	18	3		3	UGGT1	2	128922461	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	69240	128922461	114276912	684	57278											
POTEF	728378	broad.mit.edu	37	chr2	130877974	130877974	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgcccacgttgctcttgcCgctctccctgcagcagggga	12	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130877974	T	T	130877974	3	4	54	1	0	0	0	0	1	0	0	0	12361	652	23	4	3172	4	POTEF	2	130877974	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1955513	130877974	112321399	685	57279											
PLEKHB2	55041	broad.mit.edu	37	chr2	131935961	131935961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggacatgtgattcgtttGttcaggagacatgtaataag	12	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131935961	T	T	131935961	1	4	54	0	1	0	0	0	0	0	0	0	12160	1392	48	3		3	PLEKHB2	2	131935961	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1057987	131935961	111263412	686	57280											
FAM128A	653784	broad.mit.edu	37	chr2	132241848	132241848	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccccataaatgcagcacCtgctgtactcgtgctccttg	9	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132241848	A	A	132241848	1	1	54	0	1	0	0	0	0	0	0	0	5480	696	24	2		2	FAM128A	2	132241848	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	305887	132241848	110957525	687	57281											
NCKAP5	344148	broad.mit.edu	37	chr2	133540014	133540014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcacagcatcagtcgcgGttgcagaggcatctggatgc	12	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133540014	T	T	133540014	3	4	54	1	0	0	0	0	1	0	0	0	10318	1261	44	3	1387	3	NCKAP5	2	133540014	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1298166	133540014	109659359	688	57282											
NCKAP5	344148	broad.mit.edu	37	chr2	133652506	133652506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggtaaagcagtgtctaaGtggaatttagcttgggcatt	14	4	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133652506	T	T	133652506	1	4	54	0	1	0	0	0	0	0	0	0	10318	1044	36	3		3	NCKAP5	2	133652506	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	112492	133652506	109546867	689	57283											
R3HDM1	23518	broad.mit.edu	37	chr2	136393668	136393668	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgtagatgagaatacGtttgaaagatgacagaagaa	10	3	1	7			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136393668	A	A	136393668	3	1	54	1	0	0	0	0	1	0	0	0	12995	1145	40	4	852	4	R3HDM1	2	136393668	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2741162	136393668	106805705	690	57284											
R3HDM1	23518	broad.mit.edu	37	chr2	136393711	136393711	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatctatagaagaaagagaAgaagagtaccagagagccag	11	5	1	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136393711	G	G	136393711	2	3	54	1	0	0	0	0	0	0	0	1	12995	69	3	5		5	R3HDM1	2	136393711	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	43	136393711	106805662	691	57285											
LCT	3938	broad.mit.edu	37	chr2	136569960	136569960	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattttcactttcccctatGggcatgccattcccggcaag	8	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136569960	T	T	136569960	2	4	54	1	0	0	0	0	0	0	0	1	8765	1335	47	2		2	LCT	2	136569960	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	176249	136569960	106629413	692	57286											
LCT	3938	broad.mit.edu	37	chr2	136575035	136575035	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacacggtccccaaatgtgGagaagcagaaggccgcatag	12	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136575035	A	A	136575035	3	1	54	1	0	0	0	0	1	0	0	0	8765	1174	41	4	4248	4	LCT	2	136575035	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5075	136575035	106624338	693	57287											
MCM6	4175	broad.mit.edu	37	chr2	136626298	136626298	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaactgctgttctacatcCctgatcactgtctgacagtc	7	12	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136626298	G	G	136626298	3	3	54	1	0	0	0	0	1	0	0	0	9484	622	22	4	2023	4	MCM6	2	136626298	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	51263	136626298	106573075	694	57288											
THSD7B	80731	broad.mit.edu	37	chr2	137755295	137755295	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgaaaacaaatgcctagtCatagagagggaatgagttaa	11	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137755295	A	A	137755295	1	1	54	0	1	0	0	0	0	0	0	0	16003	841	29	3		3	THSD7B	2	137755295	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1128997	137755295	105444078	695	57289											
THSD7B	80731	broad.mit.edu	37	chr2	137917703	137917703	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataatgttttatttgcaagaCaggcatgcaaataaaggcag	9	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137917703	G	G	137917703	1	3	54	0	1	0	0	0	0	0	0	0	16003	493	17	4		4	THSD7B	2	137917703	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	162408	137917703	105281670	696	57290											
THSD7B	80731	broad.mit.edu	37	chr2	137946638	137946638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccaccatattagctattGtttttctcttggccacattc	6	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137946638	T	T	137946638	1	4	54	0	1	0	0	0	0	0	0	0	16003	1392	48	3		3	THSD7B	2	137946638	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28935	137946638	105252735	697	57291											
THSD7B	80731	broad.mit.edu	37	chr2	138003989	138003989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attatgaaaatctcaaaccaCgttcattctaaacctctcag	3	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138003989	T	T	138003989	1	4	54	0	1	0	0	0	0	0	0	0	16003	551	19	4		4	THSD7B	2	138003989	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	57351	138003989	105195384	698	57292											
SPOPL	339745	broad.mit.edu	37	chr2	139307870	139307870	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgttacacacaggtacaTgctcttaaaaatccctcact	6	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139307870	C	C	139307870	1	2	54	0	1	0	0	0	0	0	0	0	15203	1479	51	5		5	SPOPL	2	139307870	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1303881	139307870	103891503	699	57293											
LRP1B	53353	broad.mit.edu	37	chr2	141278851	141278851	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaacatcaacataaaagaaGtttgaaagcagctacaaaaa	5	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141278851	C	C	141278851	1	2	54	0	1	0	0	0	0	0	0	0	9042	1044	36	4		4	LRP1B	2	141278851	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1970981	141278851	101920522	700	57294											
LRP1B	53353	broad.mit.edu	37	chr2	141441466	141441466	+	Intron	DEL	A	-	-													cctggcagactgaggggtccAtgccgggctgcccgcggctt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141441466	-	-	141441466	6	5	54	0	1	1	0	1	0	0	0	0	9042	232	8	0		0	LRP1B	2	141441466	Intron	DEL	A	TCGA-17-Z022-01A-01W-0746-08	162615	141441466	101757907	701	57295											
LRP1B	53353	broad.mit.edu	37	chr2	141732748	141732748	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttaaggctatgagatataCatcctgtggtgagaatgaga	11	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141732748	A	A	141732748	1	1	54	0	1	0	0	0	0	0	0	0	9042	493	17	3		3	LRP1B	2	141732748	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	291282	141732748	101466625	702	57296											
LRP1B	53353	broad.mit.edu	37	chr2	141757837	141757837	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acccaagcaaatatctctgtGtgtcctctcccaccatgata	5	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141757837	C	C	141757837	1	2	54	0	1	0	0	0	0	0	0	0	9042	1392	48	4		4	LRP1B	2	141757837	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	25089	141757837	101441536	703	57297											
LRP1B	53353	broad.mit.edu	37	chr2	141819872	141819872	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaaactaaatgttaaagtgGagggtgggggagggaagcac	17	3	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141819872	A	A	141819872	1	1	54	0	1	0	0	0	0	0	0	0	9042	1189	41	4		4	LRP1B	2	141819872	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	62035	141819872	101379501	704	57298											
LRP1B	53353	broad.mit.edu	37	chr2	141934010	141934011	+	Intron	DNP	GG	TT	TT													ctaatggtttaaaagtgtgtGgcattttctccccttggtct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	141934011	TT	TT	141934010	1	4	54	0	1	0	0	0	0	0	0	0	9042	1363	47	2		2	LRP1B	2	141934010	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	114138	141934010	101265363	705	57299											
LRP1B	53353	broad.mit.edu	37	chr2	141986699	141986699	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagaatccagcctacgggtCtgtaaatgaaatcagtaaag	10	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141986699	A	A	141986699	1	1	54	0	1	0	0	0	0	0	0	0	9042	928	32	3		3	LRP1B	2	141986699	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	52689	141986699	101212674	706	57300											
LRP1B	53353	broad.mit.edu	37	chr2	142003428	142003428	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattttaattagcaagacaaGtttattctctctttcctttt	3	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142003428	A	A	142003428	1	1	54	0	1	0	0	0	0	0	0	0	9042	1044	36	4		4	LRP1B	2	142003428	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16729	142003428	101195945	707	57301											
ARHGAP15	55843	broad.mit.edu	37	chr2	143974009	143974009	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcagatggaggaaagaaActaaggtaataaaattcttt	9	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143974009	G	G	143974009	2	3	54	1	0	0	0	0	0	0	0	1	868	40	2	5		5	ARHGAP15	2	143974009	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1970581	143974009	99225364	708	57302											
ARHGAP15	55843	broad.mit.edu	37	chr2	144473726	144473726	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaccggcacatcctgcatAgttactcctgaacttaaagg	7	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144473726	T	T	144473726	1	4	54	0	1	0	0	0	0	0	0	0	868	435	15	5		5	ARHGAP15	2	144473726	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	499717	144473726	98725647	709	57303											
KIF5C	3800	broad.mit.edu	37	chr2	149639279	149639280	+	Intron	DNP	TC	AA	AA													tacctttgatttccctttagTccttacctctaaatcatcgt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	149639280	AA	AA	149639279	1	1	54	0	1	0	0	0	0	0	0	0	8377	1682	58	5		5	KIF5C	2	149639279	Intron	DNP	TC	TCGA-17-Z022-01A-01W-0746-08	5165553	149639279	93560094	710	57304											
LYPD6	130574	broad.mit.edu	37	chr2	150237672	150237672	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggagacaagtgtaaagactCttgaagagttttactgcaaa	10	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150237672	G	G	150237672	1	3	54	0	1	0	0	0	0	0	0	0	9202	928	32	4		4	LYPD6	2	150237672	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	598393	150237672	92961701	711	57305											
NEB	4703	broad.mit.edu	37	chr2	152484310	152484310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttccgggctccaatgtgGtggccgagctgcttgcggta	15	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152484310	T	T	152484310	3	4	54	1	0	0	0	0	1	0	0	0	10397	1252	44	3	16272	3	NEB	2	152484310	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2246638	152484310	90715063	712	57306											
NEB	4703	broad.mit.edu	37	chr2	152507102	152507102	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgacctcactttgcagttCataaactttcttagcttgca	5	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152507102	A	A	152507102	4	1	54	1	0	0	0	0	0	1	0	0	10397	835	29	3	18993	3	NEB	2	152507102	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22792	152507102	90692271	713	57307											
NEB	4703	broad.mit.edu	37	chr2	152520921	152520921	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatggcattcccaccaacccTgaatggagctgaccactgct	9	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152520921	A	A	152520921	1	1	54	0	1	0	0	0	0	0	0	0	10397	1595	55	5		5	NEB	2	152520921	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	13819	152520921	90678452	714	57308											
NEB	4703	broad.mit.edu	37	chr2	152522931	152522931	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcactatttgaaaacaaaGggcaaacagaagttggctag	10	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152522931	A	A	152522931	1	1	54	0	1	0	0	0	0	0	0	0	10397	1015	35	4		4	NEB	2	152522931	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2010	152522931	90676442	715	57309											
NEB	4703	broad.mit.edu	37	chr2	152576800	152576800	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagagatagcaacagcatcTaagcccaagcccttagccag	10	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152576800	A	A	152576800	1	1	54	0	1	0	0	0	0	0	0	0	10397	1537	53	5		5	NEB	2	152576800	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	53869	152576800	90622573	716	57310											
PRPF40A	55660	broad.mit.edu	37	chr2	153572544	153572545	+	Missense_Mutation	DNP	TC	AA	AA													ccctcccatagggggcatcaTctgcggcatcattccatgag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	153572545	AA	AA	153572544	3	1	54	1	0	0	0	0	1	0	0	0	12677	1435	50	5	2711	5	PRPF40A	2	153572544	Missense_Mutation	DNP	TC	TCGA-17-Z022-01A-01W-0746-08	995744	153572544	89626829	717	57311											
GALNT13	114805	broad.mit.edu	37	chr2	154769968	154769968	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacagttcccctaaggctAaagtctcctatggaagcaag	10	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154769968	G	G	154769968	1	3	54	0	1	0	0	0	0	0	0	0	6273	377	13	5		5	GALNT13	2	154769968	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1197424	154769968	88429405	718	57312											
GALNT13	114805	broad.mit.edu	37	chr2	154865660	154865660	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagcatcatttattgaataGaaagtcctttctccattgct	5	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154865660	C	C	154865660	1	2	54	0	1	0	0	0	0	0	0	0	6273	957	33	4		4	GALNT13	2	154865660	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	95692	154865660	88333713	719	57313											
GALNT13	114805	broad.mit.edu	37	chr2	155265518	155265518	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatgttgaaaccaatcAgtgtttagacaacatgggcc	9	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155265518	T	T	155265518	3	4	54	1	0	0	0	0	1	0	0	0	6273	188	7	5	1353	5	GALNT13	2	155265518	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	399858	155265518	87933855	720	57314											
KCNJ3	3760	broad.mit.edu	37	chr2	155711443	155711443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccctttaatagcaccagCcataactaacagcaaagaaa	5	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155711443	A	A	155711443	3	1	54	1	0	0	0	0	1	0	0	0	8122	739	26	3	1134	3	KCNJ3	2	155711443	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	445925	155711443	87487930	721	57315											
NR4A2	4929	broad.mit.edu	37	chr2	157186347	157186347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttgtagtaaaccgaccCggagtgcggcatcatctcct	12	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157186347	A	A	157186347	3	1	54	1	0	0	0	0	1	0	0	0	10728	652	23	1	1468	1	NR4A2	2	157186347	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1474904	157186347	86013026	722	57316											
ACVR1	90	broad.mit.edu	37	chr2	158617481	158617481	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaatcgaaacaatccaccTggatggtttcatctagaact	7	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158617481	A	A	158617481	3	1	54	1	0	0	0	0	1	0	0	0	220	1580	55	5	366	5	ACVR1	2	158617481	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1431134	158617481	84581892	723	57317											
UPP2	151531	broad.mit.edu	37	chr2	158974392	158974392	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgaactcatcaaattactCcaccatgcacggtgctgcga	7	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158974392	A	A	158974392	2	1	54	1	0	0	0	0	0	0	0	1	17139	842	30	3		3	UPP2	2	158974392	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	356911	158974392	84224981	724	57318											
PKP4	8502	broad.mit.edu	37	chr2	159405380	159405380	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acattgtcaccacctttggaGaacaagaaggctcagctggt	10	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159405380	A	A	159405380	1	1	54	0	1	0	0	0	0	0	0	0	12082	957	33	4		4	PKP4	2	159405380	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	430988	159405380	83793993	725	57319											
PKP4	8502	broad.mit.edu	37	chr2	159497028	159497028	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattttttaggatttttgtAacttcccatttttgtctcag	6	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159497028	T	T	159497028	1	4	54	0	1	0	0	0	0	0	0	0	12082	377	13	5		5	PKP4	2	159497028	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	91648	159497028	83702345	726	57320											
TANC1	85461	broad.mit.edu	37	chr2	160051057	160051057	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggaaatggcttcatctcAttgctagaattgttatttgc	9	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160051057	G	G	160051057	1	3	54	0	1	0	0	0	0	0	0	0	15663	232	8	5		5	TANC1	2	160051057	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	554029	160051057	83148316	727	57321											
TANC1	85461	broad.mit.edu	37	chr2	160053076	160053076	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatctgcatgctcagaggcAaagtaatgctcagctgtaac	10	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160053076	C	C	160053076	1	2	54	0	1	0	0	0	0	0	0	0	15663	145	5	5		5	TANC1	2	160053076	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2019	160053076	83146297	728	57322											
TANC1	85461	broad.mit.edu	37	chr2	160076195	160076195	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgttctgtgaatgggctttCctttcaggtgcagccctttc	10	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160076195	A	A	160076195	1	1	54	0	1	0	0	0	0	0	0	0	15663	870	30	3		3	TANC1	2	160076195	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	23119	160076195	83123178	729	57323											
BAZ2B	29994	broad.mit.edu	37	chr2	160287560	160287560	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgttttattcagtttcaTtgaagttttctctccttcag	6	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160287560	C	C	160287560	3	2	54	1	0	0	0	0	1	0	0	0	1337	1493	52	5	4610	5	BAZ2B	2	160287560	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	211365	160287560	82911813	730	57324											
PLA2R1	22925	broad.mit.edu	37	chr2	160840671	160840671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtaacagtaatattaaCataatcatcattattattta	3	4	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160840671	A	A	160840671	1	1	54	0	1	0	0	0	0	0	0	0	12105	493	17	3		3	PLA2R1	2	160840671	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	553111	160840671	82358702	731	57325											
PSMD14	10213	broad.mit.edu	37	chr2	162258003	162258003	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgtggtcttttagctgggGtcattgatacctttagtaaa	10	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162258003	C	C	162258003	1	2	54	0	1	0	0	0	0	0	0	0	12803	1276	44	4		4	PSMD14	2	162258003	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1417332	162258003	80941370	732	57326											
SLC4A10	57282	broad.mit.edu	37	chr2	162497330	162497330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgcaggcacacaccacCctccctggcctgcattttct	7	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162497330	A	A	162497330	1	1	54	0	1	0	0	0	0	0	0	0	14765	638	22	2		2	SLC4A10	2	162497330	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	239327	162497330	80702043	733	57327											
SLC4A10	57282	broad.mit.edu	37	chr2	162666921	162666921	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctatactatgttaaatagGagtggtaagagtaggcatca	10	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162666921	A	A	162666921	1	1	54	0	1	0	0	0	0	0	0	0	14765	1189	41	4		4	SLC4A10	2	162666921	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	169591	162666921	80532452	734	57328											
SLC4A10	57282	broad.mit.edu	37	chr2	162711524	162711524	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagatggaggagaaaggtGgagcaagccttatgtggcta	17	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162711524	A	A	162711524	4	1	54	1	0	0	0	0	0	1	0	0	14765	1357	47	4	564	4	SLC4A10	2	162711524	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	44603	162711524	80487849	735	57329											
DPP4	1803	broad.mit.edu	37	chr2	162902418	162902418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtaagcaaaatgccaggCatgggaaaggacgtggatgt	15	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162902418	A	A	162902418	1	1	54	0	1	0	0	0	0	0	0	0	4769	725	25	3		3	DPP4	2	162902418	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	190894	162902418	80296955	736	57330											
GCA	25801	broad.mit.edu	37	chr2	163210120	163210120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagaattttaaaggtattGctccattgtttctagcgtcc	8	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163210120	T	T	163210120	1	4	54	0	1	0	0	0	0	0	0	0	6345	1334	46	3		3	GCA	2	163210120	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	307702	163210120	79989253	737	57331											
KCNH7	90134	broad.mit.edu	37	chr2	163253232	163253232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaaatacagacataagCaaacagttaacatatacctt	5	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163253232	A	A	163253232	1	1	54	0	1	0	0	0	0	0	0	0	8107	725	25	3		3	KCNH7	2	163253232	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43112	163253232	79946141	738	57332											
KCNH7	90134	broad.mit.edu	37	chr2	163257147	163257147	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttaactcaaatacttgttCtctgaattaactgcaggcat	5	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163257147	T	T	163257147	1	4	54	0	1	0	0	0	0	0	0	0	8107	928	32	4		4	KCNH7	2	163257147	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3915	163257147	79942226	739	57333											
KCNH7	90134	broad.mit.edu	37	chr2	163309490	163309490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttaagttccaggatacaTgtatagaatgtgcaggtttg	10	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163309490	A	A	163309490	1	1	54	0	1	0	0	0	0	0	0	0	8107	1479	51	5		5	KCNH7	2	163309490	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	52343	163309490	79889883	740	57334											
SCN2A	6326	broad.mit.edu	37	chr2	166166888	166166888	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgaagaagctttctgatgtCatgatcttgactgtgttctg	11	6	4	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166166888	T	T	166166888	2	4	54	1	0	0	0	0	0	0	0	1	14029	813	29	4		4	SCN2A	2	166166888	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2857398	166166888	77032485	741	57335											
SCN2A	6326	broad.mit.edu	37	chr2	166179875	166179875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccacagcaatgtcagccaGgccagccgtgcctccagggt	12	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166179875	T	T	166179875	3	4	54	1	0	0	0	0	1	0	0	0	14029	991	35	2	2019	2	SCN2A	2	166179875	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12987	166179875	77019498	742	57336											
SCN2A	6326	broad.mit.edu	37	chr2	166245669	166245669	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttcagtgttgctactgaaGaaagtgcagagcctctgagt	11	8	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166245669	T	T	166245669	4	4	54	1	0	0	0	0	0	1	0	0	14029	943	33	3	5551	3	SCN2A	2	166245669	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	65794	166245669	76953704	743	57337											
SCN1A	6323	broad.mit.edu	37	chr2	166850735	166850735	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatggcgtagagagatgagTttcagtacacactctccagt	10	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166850735	C	C	166850735	2	2	54	1	0	0	0	0	0	0	0	1	14027	1722	60	5		5	SCN1A	2	166850735	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	605066	166850735	76348638	744	57338											
SCN7A	6332	broad.mit.edu	37	chr2	167330312	167330312	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataattatataacatactctAatactggtctccattttggc	4	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167330312	T	T	167330312	4	4	54	1	0	0	0	0	0	1	0	0	14036	372	13	5	4696	5	SCN7A	2	167330312	Nonsense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	479577	167330312	75869061	745	57339											
XIRP2	129446	broad.mit.edu	37	chr2	167892939	167892939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagctttaaaatttgactGcctcactggatttcagactt	8	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167892939	T	T	167892939	1	4	54	0	1	0	0	0	0	0	0	0	17557	1334	46	3		3	XIRP2	2	167892939	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	562627	167892939	75306434	746	57340											
XIRP2	129446	broad.mit.edu	37	chr2	168096434	168096434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaagaaatgaacaagaaGggtccaaagtacagaaaatt	10	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168096434	T	T	168096434	3	4	54	1	0	0	0	0	1	0	0	0	17557	1000	35	2	946	2	XIRP2	2	168096434	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	203495	168096434	75102939	747	57341											
B3GALT1	8708	broad.mit.edu	37	chr2	168713748	168713748	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgggaattgatgcagtgGggaggagagcatagagaagt	17	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168713748	A	A	168713748	1	1	54	0	1	0	0	0	0	0	0	0	1252	1247	43	4		4	B3GALT1	2	168713748	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	617314	168713748	74485625	748	57342											
STK39	27347	broad.mit.edu	37	chr2	168921885	168921885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggatggtgctggcactcaCtgcaatctgttacgagagcc	14	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168921885	A	A	168921885	3	1	54	1	0	0	0	0	1	0	0	0	15423	565	20	3	412	3	STK39	2	168921885	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	208137	168921885	74277488	749	57343											
LASS6	253782	broad.mit.edu	37	chr2	169362619	169362619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatggatgccaattcatgcGgccttctagaggtccagtca	10	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169362619	T	T	169362619	1	4	54	0	1	0	0	0	0	0	0	0	8715	1131	39	1		1	LASS6	2	169362619	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	440734	169362619	73836754	750	57344											
NOSTRIN	115677	broad.mit.edu	37	chr2	169713352	169713352	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttatttttagaatacttGtttctggtccacttggcctt	9	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169713352	A	A	169713352	1	1	54	0	1	0	0	0	0	0	0	0	10641	1392	48	4		4	NOSTRIN	2	169713352	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	350733	169713352	73486021	751	57345											
SPC25	57405	broad.mit.edu	37	chr2	169733935	169733935	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagctagaatatgcttggctCtctgacatgtatctaagaaa	8	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169733935	G	G	169733935	1	3	54	0	1	0	0	0	0	0	0	0	15138	928	32	4		4	SPC25	2	169733935	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	20583	169733935	73465438	752	57346											
ABCB11	8647	broad.mit.edu	37	chr2	169781256	169781256	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccgagcaatagcaatgcGttgtttctcccctctagaga	10	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169781256	A	A	169781256	3	1	54	1	0	0	0	0	1	0	0	0	42	1145	40	4	297	4	ABCB11	2	169781256	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	47321	169781256	73418117	753	57347											
ABCB11	8647	broad.mit.edu	37	chr2	169783461	169783461	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatgaaacaaagttttgaCtgcattttgactgtgaccca	7	8	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169783461	T	T	169783461	1	4	54	0	1	0	0	0	0	0	0	0	42	580	20	4		4	ABCB11	2	169783461	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2205	169783461	73415912	754	57348											
ABCB11	8647	broad.mit.edu	37	chr2	169870031	169870031	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccgaaacttgaaaaacAaagggttcagagatcatcta	7	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169870031	T	T	169870031	1	4	54	0	1	0	0	0	0	0	0	0	42	145	5	5		5	ABCB11	2	169870031	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	86570	169870031	73329342	755	57349											
ABCB11	8647	broad.mit.edu	37	chr2	169870101	169870101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacttaatttagttactagaTtctcatgaatagtactcaac	4	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169870101	A	A	169870101	1	1	54	0	1	0	0	0	0	0	0	0	42	1508	52	5		5	ABCB11	2	169870101	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	70	169870101	73329272	756	57350											
LRP2	4036	broad.mit.edu	37	chr2	170031643	170031643	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaggaaatacccacagaatCatgatcgtatacaatcaaca	5	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170031643	G	G	170031643	1	3	54	0	1	0	0	0	0	0	0	0	9043	841	29	4		4	LRP2	2	170031643	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	161542	170031643	73167730	757	57351											
LRP2	4036	broad.mit.edu	37	chr2	170062157	170062157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacaggtacctagtcataCaaaaggagtcaataattaat	7	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170062157	A	A	170062157	1	1	54	0	1	0	0	0	0	0	0	0	9043	493	17	3		3	LRP2	2	170062157	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	30514	170062157	73137216	758	57352											
SSB	6741	broad.mit.edu	37	chr2	170663663	170663663	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcatggaagtagtatccCctgaaaggccaatattctta	10	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170663663	T	T	170663663	1	4	54	0	1	0	0	0	0	0	0	0	15296	638	22	4		4	SSB	2	170663663	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	601506	170663663	72535710	759	57353											
MYO3B	140469	broad.mit.edu	37	chr2	171230626	171230626	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccactgccgcctttctcaTctgtcatctcaattaactct	3	16	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171230626	A	A	171230626	1	1	54	0	1	0	0	0	0	0	0	0	10171	1450	50	5		5	MYO3B	2	171230626	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	566963	171230626	71968747	760	57354											
TLK1	9874	broad.mit.edu	37	chr2	171863020	171863020	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtataatagggggtttgaTctcattgagatatcttagtg	11	3	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171863020	C	C	171863020	3	2	54	1	0	0	0	0	1	0	0	0	16066	1435	50	5	588	5	TLK1	2	171863020	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	632394	171863020	71336353	761	57355											
TLK1	9874	broad.mit.edu	37	chr2	171872531	171872531	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaagtggaagttgcagCaagctgagatcgtgccactg	15	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171872531	G	G	171872531	1	3	54	0	1	0	0	0	0	0	0	0	16066	725	25	4		4	TLK1	2	171872531	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9511	171872531	71326842	762	57356											
DCAF17	80067	broad.mit.edu	37	chr2	172337380	172337380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaactattttcttctaaGtgtatgtttgaagatcccta	6	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172337380	T	T	172337380	1	4	54	0	1	0	0	0	0	0	0	0	4302	1044	36	3		3	DCAF17	2	172337380	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	464849	172337380	70861993	763	57357											
MAP1D	254042	broad.mit.edu	37	chr2	172945153	172945153	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggagccgcccgaaggtcgCggtgacctggtgccttttta	15	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172945153	T	T	172945153	1	4	54	0	1	0	0	0	0	0	0	0	9321	783	27	4		4	MAP1D	2	172945153	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	607773	172945153	70254220	764	57358											
DLX1	1745	broad.mit.edu	37	chr2	172950375	172950375	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagggaagcagaggagagAaagtcccacacccagacccc	11	12	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172950375	T	T	172950375	1	4	54	0	1	0	0	0	0	0	0	0	4610	261	9	5		5	DLX1	2	172950375	5'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	5222	172950375	70248998	765	57359											
PDK1	5163	broad.mit.edu	37	chr2	173451035	173451035	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaggaggtggcgttcctttGaggaaaattgacagactttt	13	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173451035	T	T	173451035	3	4	54	1	0	0	0	0	1	0	0	0	11769	1281	45	3	1009	3	PDK1	2	173451035	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	500660	173451035	69748338	766	57360											
ZAK	51776	broad.mit.edu	37	chr2	173977841	173977841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagttattggtctgttcaGggtatctaagctaggagggt	14	5	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173977841	T	T	173977841	1	4	54	0	1	0	0	0	0	0	0	0	17639	1015	35	2		2	ZAK	2	173977841	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	526806	173977841	69221532	767	57361											
GPR155	151556	broad.mit.edu	37	chr2	175346449	175346449	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaagctggaagtgcaaatCtggagacaaaatttcctagt	9	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175346449	A	A	175346449	3	1	54	1	0	0	0	0	1	0	0	0	6725	913	32	3	2436	3	GPR155	2	175346449	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1368608	175346449	67852924	768	57362											
WIPF1	7456	broad.mit.edu	37	chr2	175432714	175432714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactcctgggactgtctactCcactcctggatggcaactga	9	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175432714	A	A	175432714	3	1	54	1	0	0	0	0	1	0	0	0	17494	855	30	3	306	3	WIPF1	2	175432714	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	86265	175432714	67766659	769	57363											
WIPF1	7456	broad.mit.edu	37	chr2	175445906	175445906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagggagtgatacagtcCcttattttgctagctttgca	9	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175445906	A	A	175445906	1	1	54	0	1	0	0	0	0	0	0	0	17494	638	22	2		2	WIPF1	2	175445906	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13192	175445906	67753467	770	57364											
CHRNA1	1134	broad.mit.edu	37	chr2	175622403	175622403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggttgtaatccacccattGctagaaacaaagacatacag	7	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175622403	T	T	175622403	3	4	54	1	0	0	0	0	1	0	0	0	3412	1333	46	3	1162	3	CHRNA1	2	175622403	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	176497	175622403	67576970	771	57365											
CHRNA1	1134	broad.mit.edu	37	chr2	175622926	175622926	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggtggatcacctgaggtCaggagttcgagaccagcctg	16	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175622926	A	A	175622926	1	1	54	0	1	0	0	0	0	0	0	0	3412	841	29	3		3	CHRNA1	2	175622926	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	523	175622926	67576447	772	57366											
ATF2	1386	broad.mit.edu	37	chr2	176001188	176001188	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcataagttgaataacttatCacattctttttctcatggca	4	8	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176001188	T	T	176001188	1	4	54	0	1	0	0	0	0	0	0	0	1084	841	29	4		4	ATF2	2	176001188	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	378262	176001188	67198185	773	57367											
ATP5G3	518	broad.mit.edu	37	chr2	176043979	176043979	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattaaataccgtagagccCtggaaaacagaaaataaagg	8	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176043979	T	T	176043979	5	4	54	1	0	0	0	0	0	0	1	0	1159	695	24	4	320	4	ATP5G3	2	176043979	Splice_Site	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42791	176043979	67155394	774	57368											
HOXD12	3238	broad.mit.edu	37	chr2	176965452	176965452	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcgtatgaagaagaagcgCgtggtgcttcgggagcaggc	18	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176965452	G	G	176965452	2	3	54	1	0	0	0	0	0	0	0	1	7388	755	27	4		4	HOXD12	2	176965452	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	921473	176965452	66233921	775	57369											
HOXD11	3237	broad.mit.edu	37	chr2	176972320	176972320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgtaccgcggcggcggCggcggcggcagcgcgggggg	24	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176972320	A	A	176972320	2	1	54	1	0	0	0	0	0	0	0	1	7387	755	27	3		3	HOXD11	2	176972320	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6868	176972320	66227053	776	57370											
PDE11A	50940	broad.mit.edu	37	chr2	178544901	178544901	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctcacgagctctcccAgcaaaacttagcaatgttag	8	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178544901	T	T	178544901	1	4	54	0	1	0	0	0	0	0	0	0	11725	203	7	5		5	PDE11A	2	178544901	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1572581	178544901	64654472	777	57371											
PDE11A	50940	broad.mit.edu	37	chr2	178592849	178592849	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacgtcgagagaaaagtcatCaaaatgaatgtcatcgatgg	10	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178592849	G	G	178592849	3	3	54	1	0	0	0	0	1	0	0	0	11725	826	29	4	1001	4	PDE11A	2	178592849	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	47948	178592849	64606524	778	57372											
PDE11A	50940	broad.mit.edu	37	chr2	178769978	178769978	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatacatcccttgtagactAaattgcacacttcttctata	4	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178769978	G	G	178769978	1	3	54	0	1	0	0	0	0	0	0	0	11725	377	13	5		5	PDE11A	2	178769978	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	177129	178769978	64429395	779	57373											
TTN	7273	broad.mit.edu	37	chr2	179422842	179422842	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttaagggggacaccatctCttgataaggtcactttggga	11	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179422842	G	G	179422842	3	3	54	1	0	0	0	0	1	0	0	0	16861	913	32	4	20880	4	TTN	2	179422842	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	652864	179422842	63776531	780	57374											
TTN	7273	broad.mit.edu	37	chr2	179429693	179429693	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttagaatccagtggggcacTttttccatacctgttttcag	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179429693	C	C	179429693	3	2	54	1	0	0	0	0	1	0	0	0	16861	1609	56	5	26961	5	TTN	2	179429693	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	6851	179429693	63769680	781	57375											
TTN	7273	broad.mit.edu	37	chr2	179437781	179437781	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcagggcaatctcaaCcatatacccagtgatttctg	8	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179437781	G	G	179437781	3	3	54	1	0	0	0	0	1	0	0	0	16861	507	18	4	35049	4	TTN	2	179437781	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8088	179437781	63761592	782	57376											
TTN	7273	broad.mit.edu	37	chr2	179454078	179454078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatggtttgcctctaacccCtgcctcaagcctaatggtgt	9	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179454078	A	A	179454078	3	1	54	1	0	0	0	0	1	0	0	0	16861	681	24	2	45841	2	TTN	2	179454078	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	16297	179454078	63745295	783	57377											
TTN	7273	broad.mit.edu	37	chr2	179457205	179457205	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgggcagcattacgaatttCaagcttgctaccaactggag	10	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179457205	T	T	179457205	3	4	54	1	0	0	0	0	1	0	0	0	16861	835	29	4	48700	4	TTN	2	179457205	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3127	179457205	63742168	784	57378											
TTN	7273	broad.mit.edu	37	chr2	179457668	179457668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgattggctcttctccaCtcttcatctccaactttctg	6	13	6	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179457668	A	A	179457668	3	1	54	1	0	0	0	0	1	0	0	0	16861	564	20	3	49053	3	TTN	2	179457668	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	463	179457668	63741705	785	57379											
TTN	7273	broad.mit.edu	37	chr2	179469545	179469545	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatttcactgccaccattatCaagaggggcatcccatgtca	8	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179469545	T	T	179469545	3	4	54	1	0	0	0	0	1	0	0	0	16861	826	29	4	53750	4	TTN	2	179469545	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11877	179469545	63729828	786	57380											
TTN	7273	broad.mit.edu	37	chr2	179499460	179499460	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agccccataccttttactgtCaaaatggcagttgtaattgc	7	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179499460	A	A	179499460	3	1	54	1	0	0	0	0	1	0	0	0	16861	825	29	3	66088	3	TTN	2	179499460	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	29915	179499460	63699913	787	57381											
TTN	7273	broad.mit.edu	37	chr2	179538317	179538317	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgcttttaagaaagaaaaTtaatgggaagttaaagatat	9	1	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179538317	A	A	179538317	1	1	54	0	1	0	0	0	0	0	0	0	16861	1508	52	5		5	TTN	2	179538317	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	38857	179538317	63661056	788	57382											
TTN	7273	broad.mit.edu	37	chr2	179579978	179579978	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataggatgaggctttttgcgGaaaatgggtggttctaaaat	13	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179579978	A	A	179579978	2	1	54	1	0	0	0	0	0	0	0	1	16861	1165	41	4		4	TTN	2	179579978	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41661	179579978	63619395	789	57383											
TTN	7273	broad.mit.edu	37	chr2	179580074	179580074	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatcttccactccatcagaGagatagagagtgaaaaaaac	7	9	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179580074	C	C	179580074	1	2	54	0	1	0	0	0	0	0	0	0	16861	957	33	4		4	TTN	2	179580074	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96	179580074	63619299	790	57384											
TTN	7273	broad.mit.edu	37	chr2	179580201	179580201	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctaatgtgaaaaacacacAggtggggagagcgctgacct	14	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179580201	T	T	179580201	1	4	54	0	1	0	0	0	0	0	0	0	16861	203	7	5		5	TTN	2	179580201	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	127	179580201	63619172	791	57385											
TTN	7273	broad.mit.edu	37	chr2	179605909	179605909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcacaggtggactcaccCaacatattctctgctttaca	7	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179605909	A	A	179605909	3	1	54	1	0	0	0	0	1	0	0	0	16861	593	21	2	92738	2	TTN	2	179605909	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25708	179605909	63593464	792	57386											
TTN	7273	broad.mit.edu	37	chr2	179615590	179615590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgactctccaattgtaGtattggccataatttcttcc	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179615590	T	T	179615590	3	4	54	1	0	0	0	0	1	0	0	0	16861	1029	36	3	98760	3	TTN	2	179615590	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9681	179615590	63583783	793	57387											
TTN	7273	broad.mit.edu	37	chr2	179632585	179632585	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaccactgtgtacttcccAgcatcagacatccgggtgga	10	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179632585	T	T	179632585	2	4	54	1	0	0	0	0	0	0	0	1	16861	175	7	5		5	TTN	2	179632585	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	16995	179632585	63566788	794	57388											
CWC22	57703	broad.mit.edu	37	chr2	180830695	180830695	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttcgagtcagtatctcCctcatcaagaatttctgtaa	7	9	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180830695	A	A	180830695	4	1	54	1	0	0	0	0	0	1	0	0	4101	632	22	2	1537	2	CWC22	2	180830695	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1198110	180830695	62368678	795	57389											
ITGA4	3676	broad.mit.edu	37	chr2	182340550	182340550	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaactctatgctataggtaGcatcagcaagtacagagcta	9	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182340550	A	A	182340550	1	1	54	0	1	0	0	0	0	0	0	0	7948	986	34	4		4	ITGA4	2	182340550	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1509855	182340550	60858823	796	57390											
ITGA4	3676	broad.mit.edu	37	chr2	182350603	182350603	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgttttctctccctttctaTctagggagcagtaatgaatg	8	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182350603	A	A	182350603	1	1	54	0	1	0	0	0	0	0	0	0	7948	1450	50	5		5	ITGA4	2	182350603	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	10053	182350603	60848770	797	57391											
ITGA4	3676	broad.mit.edu	37	chr2	182390082	182390082	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtttccttgcttcttacAttaatgaaaaaactgtattc	4	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182390082	G	G	182390082	1	3	54	0	1	0	0	0	0	0	0	0	7948	232	8	5		5	ITGA4	2	182390082	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	39479	182390082	60809291	798	57392											
CERKL	375298	broad.mit.edu	37	chr2	182402976	182402976	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtcttggatgcaatctgtAaagaaaatacattatttcat	6	5	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182402976	T	T	182402976	1	4	54	0	1	0	0	0	0	0	0	0	3298	377	13	5		5	CERKL	2	182402976	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	12894	182402976	60796397	799	57393											
PDE1A	5136	broad.mit.edu	37	chr2	183099181	183099181	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgttacgatgacagctGctggatatgccaaaccaacc	8	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183099181	A	A	183099181	3	1	54	1	0	0	0	0	1	0	0	0	11727	1319	46	4	1286	4	PDE1A	2	183099181	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	696205	183099181	60100192	800	57394											
COL3A1	1281	broad.mit.edu	37	chr2	189851706	189851706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtagacagtagatgttgCatgcacttctaaatgctttt	8	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189851706	A	A	189851706	1	1	54	0	1	0	0	0	0	0	0	0	3720	725	25	3		3	COL3A1	2	189851706	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6752525	189851706	53347667	801	57395											
COL3A1	1281	broad.mit.edu	37	chr2	189867118	189867118	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atacatgtcccatagcccagGatctctatcttgctgaaaaa	6	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189867118	A	A	189867118	1	1	54	0	1	0	0	0	0	0	0	0	3720	1189	41	4		4	COL3A1	2	189867118	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15412	189867118	53332255	802	57396											
C2orf88	84281	broad.mit.edu	37	chr2	191013735	191013735	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcactcttcttgcccagGctggagtgcaatggcacgat	11	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191013735	A	A	191013735	1	1	54	0	1	0	0	0	0	0	0	0	2224	1218	42	4		4	C2orf88	2	191013735	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1146617	191013735	52185638	803	57397											
HIBCH	26275	broad.mit.edu	37	chr2	191105885	191105885	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaatctgggtgctcctgTattggtgaatatatatttag	10	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191105885	C	C	191105885	1	2	54	0	1	0	0	0	0	0	0	0	7167	1653	57	5		5	HIBCH	2	191105885	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	92150	191105885	52093488	804	57398											
STAT1	6772	broad.mit.edu	37	chr2	191862700	191862700	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctgggtaagttcagtgaCattcagcaactctattattt	7	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191862700	T	T	191862700	3	4	54	1	0	0	0	0	1	0	0	0	15382	478	17	4	1657	4	STAT1	2	191862700	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	756815	191862700	51336673	805	57399											
MYO1B	4430	broad.mit.edu	37	chr2	192231501	192231501	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatgctcattctttctgCccatctaaatgctctacctg	5	13	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192231501	T	T	192231501	1	4	54	0	1	0	0	0	0	0	0	0	10163	754	26	4		4	MYO1B	2	192231501	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	368801	192231501	50967872	806	57400											
HECW2	57520	broad.mit.edu	37	chr2	197081766	197081766	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcgttgttcattgttgaatCtttccactgcagcccagaac	8	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197081766	G	G	197081766	3	3	54	1	0	0	0	0	1	0	0	0	7110	913	32	4	270	4	HECW2	2	197081766	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4850265	197081766	46117607	807	57401											
HECW2	57520	broad.mit.edu	37	chr2	197081909	197081909	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagagtccccagacataaatCatcctcttgaattctttaca	4	11	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197081909	A	A	197081909	1	1	54	0	1	0	0	0	0	0	0	0	7110	841	29	3		3	HECW2	2	197081909	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	143	197081909	46117464	808	57402											
HECW2	57520	broad.mit.edu	37	chr2	197297730	197297730	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaagaaaaaaaataaattcCcagaatctgctatgtgtata	6	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197297730	G	G	197297730	1	3	54	0	1	0	0	0	0	0	0	0	7110	638	22	4		4	HECW2	2	197297730	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	215821	197297730	45901643	809	57403											
ANKRD44	91526	broad.mit.edu	37	chr2	198051515	198051515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttttttaaaagcacataTattaccatattacaaagtat	2	5	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198051515	C	C	198051515	1	2	54	0	1	0	0	0	0	0	0	0	672	1421	49	5		5	ANKRD44	2	198051515	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	753785	198051515	45147858	810	57404											
RFTN2	130132	broad.mit.edu	37	chr2	198460720	198460720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaattttactcacatctgGtgtttgagcagctgaattcc	7	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198460720	T	T	198460720	3	4	54	1	0	0	0	0	1	0	0	0	13367	1261	44	3	285	3	RFTN2	2	198460720	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	409205	198460720	44738653	811	57405											
PLCL1	5334	broad.mit.edu	37	chr2	198990592	198990592	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagtaagcaaaaatgggccAtgggatcctcctagtagacc	11	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198990592	T	T	198990592	1	4	54	0	1	0	0	0	0	0	0	0	12134	232	8	5		5	PLCL1	2	198990592	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	529872	198990592	44208781	812	57406											
C2orf60	129450	broad.mit.edu	37	chr2	200802336	200802336	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggagggactggttgcagtGagccaggatcgtgccactgc	17	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200802336	C	C	200802336	1	2	54	0	1	0	0	0	0	0	0	0	2201	1305	45	4		4	C2orf60	2	200802336	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1811744	200802336	42397037	813	57407											
AOX1	316	broad.mit.edu	37	chr2	201502993	201502994	+	Missense_Mutation	DNP	GG	AT	AT													gagaagacatgttaataactGgaggccgccatccttacctt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	201502994	AT	AT	201502993	3	1	54	1	0	0	0	0	1	0	0	0	731	1349	47	4	2626	4	AOX1	2	201502993	Missense_Mutation	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	700657	201502993	41696380	814	57408											
ORC2L	4999	broad.mit.edu	37	chr2	201791391	201791391	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacaatcctactaccgtgaaGgctaaaacaaaaattcttta	4	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201791391	C	C	201791391	1	2	54	0	1	0	0	0	0	0	0	0	11356	1015	35	4		4	ORC2L	2	201791391	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	288398	201791391	41407982	815	57409											
MPP4	58538	broad.mit.edu	37	chr2	202541739	202541739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaattcacagcacatgcaGgccagagccaagattcttga	8	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202541739	T	T	202541739	1	4	54	0	1	0	0	0	0	0	0	0	9830	1015	35	2		2	MPP4	2	202541739	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	750348	202541739	40657634	816	57410											
CDK15	65061	broad.mit.edu	37	chr2	202671411	202671411	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtcaagagctgtgtgcaaaGactgtacagcctggatgcag	14	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202671411	T	T	202671411	3	4	54	1	0	0	0	0	1	0	0	0	3161	957	33	3		3	CDK15	2	202671411	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	129672	202671411	40527962	817	57411											
CDK15	65061	broad.mit.edu	37	chr2	202737162	202737162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagcacttccatgtggggGctctaagctgtaggaagatg	14	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202737162	T	T	202737162	1	4	54	0	1	0	0	0	0	0	0	0	3161	1218	42	3		3	CDK15	2	202737162	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	65751	202737162	40462211	818	57412											
BMPR2	659	broad.mit.edu	37	chr2	203417614	203417614	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctatgcagaatgaacggtAagaccctaaggggtgtggca	14	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203417614	T	T	203417614	1	4	54	0	1	0	0	0	0	0	0	0	1477	377	13	5		5	BMPR2	2	203417614	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	680452	203417614	39781759	819	57413											
FAM117B	150864	broad.mit.edu	37	chr2	203560583	203560583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctaattttattaaaacaaGcatttttgtcttaaatctag	3	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203560583	T	T	203560583	1	4	54	0	1	0	0	0	0	0	0	0	5456	986	34	3		3	FAM117B	2	203560583	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	142969	203560583	39638790	820	57414											
PARD3B	117583	broad.mit.edu	37	chr2	205473624	205473624	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaacctgatttaaaacaAaagtgtgggcctgtgtcttc	10	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205473624	C	C	205473624	1	2	54	0	1	0	0	0	0	0	0	0	11538	29	1	5		5	PARD3B	2	205473624	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1913041	205473624	37725749	821	57415											
PARD3B	117583	broad.mit.edu	37	chr2	205904799	205904799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatcaagtgatccttctGcctcagcctcctgagtagct	10	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205904799	T	T	205904799	1	4	54	0	1	0	0	0	0	0	0	0	11538	1334	46	3		3	PARD3B	2	205904799	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	431175	205904799	37294574	822	57416											
PARD3B	117583	broad.mit.edu	37	chr2	206462563	206462563	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtttacagcatccttaAagaaaagaaattccaaccaa	5	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206462563	C	C	206462563	1	2	54	0	1	0	0	0	0	0	0	0	11538	29	1	5		5	PARD3B	2	206462563	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	557764	206462563	36736810	823	57417											
LOC200726	200726	broad.mit.edu	37	chr2	207509173	207509173	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccaacactgtttcaggCttctgggattttatgatcta	8	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207509173	A	A	207509173	2	1	54	1	0	0	0	0	0	0	0	1	8951	784	28	3		3	LOC200726	2	207509173	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1046610	207509173	35690200	824	57418											
MDH1B	130752	broad.mit.edu	37	chr2	207610350	207610350	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtctaagagcttacctgaTtggtatggctgaaaatgtat	10	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207610350	A	A	207610350	3	1	54	1	0	0	0	0	1	0	0	0	9502	1490	52	5	168	5	MDH1B	2	207610350	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	101177	207610350	35589023	825	57419											
CRYGA	1418	broad.mit.edu	37	chr2	209025469	209025469	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagagccacttagtgcagGgaacacaacttgtatattta	8	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209025469	T	T	209025469	1	4	54	0	1	0	0	0	0	0	0	0	3946	1247	43	2		2	CRYGA	2	209025469	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1415119	209025469	34173904	826	57420											
CRYGA	1418	broad.mit.edu	37	chr2	209025587	209025587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcatctgcacccccccagtCgtggtaccttctgtagtccc	9	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209025587	A	A	209025587	3	1	54	1	0	0	0	0	1	0	0	0	3946	884	31	3	62	3	CRYGA	2	209025587	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	118	209025587	34173786	827	57421											
PIKFYVE	200576	broad.mit.edu	37	chr2	209141439	209141439	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttaatccaactcagacaCaagaaggaaagcagaaccta	6	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209141439	G	G	209141439	3	3	54	1	0	0	0	0	1	0	0	0	12019	478	17	4	336	4	PIKFYVE	2	209141439	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	115852	209141439	34057934	828	57422											
PIKFYVE	200576	broad.mit.edu	37	chr2	209209900	209209900	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtggaacagtgccgaagAagggcttccaacaaataggt	12	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209209900	T	T	209209900	3	4	54	1	0	0	0	0	1	0	0	0	12019	246	9	5	5230	5	PIKFYVE	2	209209900	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	68461	209209900	33989473	829	57423											
PTH2R	5746	broad.mit.edu	37	chr2	209302174	209302174	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttgctacagacaatgacCtaaaattttgttttttgaat	5	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209302174	T	T	209302174	1	4	54	0	1	0	0	0	0	0	0	0	12866	696	24	4		4	PTH2R	2	209302174	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92274	209302174	33897199	830	57424											
MYL1	4632	broad.mit.edu	37	chr2	211163081	211163081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacacacacacacacacaCacacacacactgctacacac	1	19	0	0	rs34356729		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211163081	A	A	211163081	1	1	54	0	1	0	0	0	0	0	0	0	10137	493	17	3		3	MYL1	2	211163081	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1860907	211163081	32036292	831	57425											
CPS1	1373	broad.mit.edu	37	chr2	211456787	211456787	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgtatatatttatgagaTacatgtgatattttgataca	6	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211456787	C	C	211456787	1	2	54	0	1	0	0	0	0	0	0	0	3855	1421	49	5		5	CPS1	2	211456787	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	293706	211456787	31742586	832	57426											
CPS1	1373	broad.mit.edu	37	chr2	211502642	211502642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtaggcacccattcaaaaGgccattgttaataaaaagag	8	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211502642	T	T	211502642	1	4	54	0	1	0	0	0	0	0	0	0	3855	1015	35	2		2	CPS1	2	211502642	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45855	211502642	31696731	833	57427											
ERBB4	2066	broad.mit.edu	37	chr2	212537931	212537931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcttccatcttctcacaCtgggggtcacactccacaca	5	17	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212537931	A	A	212537931	3	1	54	1	0	0	0	0	1	0	0	0	5251	564	20	3	2312	3	ERBB4	2	212537931	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1035289	212537931	30661442	834	57428											
ERBB4	2066	broad.mit.edu	37	chr2	212615490	212615490	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctttcactccttgactagGagtaactcctcaaaggaaat	6	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212615490	T	T	212615490	1	4	54	0	1	0	0	0	0	0	0	0	5251	1189	41	3		3	ERBB4	2	212615490	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	77559	212615490	30583883	835	57429											
ERBB4	2066	broad.mit.edu	37	chr2	213290881	213290881	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcattgttctctactttTaagtttgaatgtgatatcac	6	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213290881	A	A	213290881	1	1	54	0	1	0	0	0	0	0	0	0	5251	1769	61	5		5	ERBB4	2	213290881	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	675391	213290881	29908492	836	57430											
IKZF2	22807	broad.mit.edu	37	chr2	213872288	213872288	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccttctccattgaagacCttgtagatgtccttcagaga	7	11	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	213872288	G	G	213872288	3	3	54	1	0	0	0	0	1	0	0	0	7685	680	24	4	207	4	IKZF2	2	213872288	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	581407	213872288	29327085	837	57431											
SPAG16	79582	broad.mit.edu	37	chr2	214215364	214215364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaagagacaaagtagttGggcaggtaaagatatagtca	13	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214215364	T	T	214215364	3	4	54	1	0	0	0	0	1	0	0	0	15094	1348	47	2	799	2	SPAG16	2	214215364	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	343076	214215364	28984009	838	57432											
SPAG16	79582	broad.mit.edu	37	chr2	214332180	214332180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggcatgatttaaaagGcacgagtaagcaagaggttt	11	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214332180	T	T	214332180	1	4	54	0	1	0	0	0	0	0	0	0	15094	1218	42	3		3	SPAG16	2	214332180	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	116816	214332180	28867193	839	57433											
SPAG16	79582	broad.mit.edu	37	chr2	214740079	214740079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccatcaaagaggttccaGgaagcaagagatgagccaaa	11	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214740079	T	T	214740079	1	4	54	0	1	0	0	0	0	0	0	0	15094	1015	35	2		2	SPAG16	2	214740079	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	407899	214740079	28459294	840	57434											
ABCA12	26154	broad.mit.edu	37	chr2	215840558	215840558	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaagagagggggagatctGaatctctggataactgttgc	13	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215840558	C	C	215840558	3	2	54	1	0	0	0	0	1	0	0	0	30	1299	45	4	2535	4	ABCA12	2	215840558	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1100479	215840558	27358815	841	57435											
TMEM169	92691	broad.mit.edu	37	chr2	216960648	216960648	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgagtttactcaaacaagtCcaactctttataagacatag	6	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216960648	A	A	216960648	1	1	54	0	1	0	0	0	0	0	0	0	16207	870	30	3		3	TMEM169	2	216960648	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1120090	216960648	26238725	842	57436											
IGFBP2	3485	broad.mit.edu	37	chr2	217526667	217526667	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggggccctctggagcacctCtactccctgcacatccccaa	8	19	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217526667	A	A	217526667	2	1	54	1	0	0	0	0	0	0	0	1	7649	900	32	3		3	IGFBP2	2	217526667	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	566019	217526667	25672706	843	57437											
IGFBP5	3488	broad.mit.edu	37	chr2	217542840	217542840	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaggggacgtacctgctTtctcttgtagaatcctttgc	12	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217542840	G	G	217542840	3	3	54	1	0	0	0	0	1	0	0	0	7652	1850	64	5	144	5	IGFBP5	2	217542840	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	16173	217542840	25656533	844	57438											
TNS1	7145	broad.mit.edu	37	chr2	218755749	218755749	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccgcttcattgcaaaccGgtccagagcctggtccgcac	10	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218755749	A	A	218755749	3	1	54	1	0	0	0	0	1	0	0	0	16466	1115	39	4	4876	4	TNS1	2	218755749	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1212909	218755749	24443624	845	57439											
RNF25	64320	broad.mit.edu	37	chr2	219529630	219529630	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcagagaggaaataatgaAcagcagaaggctgactcaaa	12	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219529630	T	T	219529630	1	4	54	0	1	0	0	0	0	0	0	0	13596	58	2	5		5	RNF25	2	219529630	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	773881	219529630	23669743	846	57440											
CCDC108	255101	broad.mit.edu	37	chr2	219886503	219886503	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagctcaggcccaagtaccGagggggtggttgtcaacggc	15	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219886503	T	T	219886503	2	4	54	1	0	0	0	0	0	0	0	1	2769	1072	37	3		3	CCDC108	2	219886503	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	356873	219886503	23312870	847	57441											
PTPRN	5798	broad.mit.edu	37	chr2	220162805	220162805	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgcgcagtttggggaagGactgcagctgcctcctccct	13	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220162805	A	A	220162805	2	1	54	1	0	0	0	0	0	0	0	1	12915	1161	41	4		4	PTPRN	2	220162805	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	276302	220162805	23036568	848	57442											
PTPRN	5798	broad.mit.edu	37	chr2	220162839	220162839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccctctgtgggaacaagGctagaatcaagggaggcagt	13	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220162839	T	T	220162839	1	4	54	0	1	0	0	0	0	0	0	0	12915	1218	42	3		3	PTPRN	2	220162839	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	34	220162839	23036534	849	57443											
PTPRN	5798	broad.mit.edu	37	chr2	220167629	220167629	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcctgcaaggcagaactAttcggggccaggcaggctca	14	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220167629	G	G	220167629	1	3	54	0	1	0	0	0	0	0	0	0	12915	464	16	5		5	PTPRN	2	220167629	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4790	220167629	23031744	850	57444											
PTPRN	5798	broad.mit.edu	37	chr2	220168430	220168430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatcagcctcaccattgCtagagttgtagagaaaggct	9	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220168430	A	A	220168430	1	1	54	0	1	0	0	0	0	0	0	0	12915	812	28	3		3	PTPRN	2	220168430	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	801	220168430	23030943	851	57445											
SPEG	10290	broad.mit.edu	37	chr2	220336962	220336962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcagatgtggtcccaggCcctccagatggcgccccgca	11	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220336962	A	A	220336962	2	1	54	1	0	0	0	0	0	0	0	1	15154	726	26	3		3	SPEG	2	220336962	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	168532	220336962	22862411	852	57446											
GMPPA	29926	broad.mit.edu	37	chr2	220368606	220368606	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccatggactttggatttaTctgaagctgaatcaggtgaa	11	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220368606	A	A	220368606	1	1	54	0	1	0	0	0	0	0	0	0	6558	1450	50	5		5	GMPPA	2	220368606	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	31644	220368606	22830767	853	57447											
GMPPA	29926	broad.mit.edu	37	chr2	220369570	220369570	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtgactgtctctgccctCaccagctgccttgctctggg	10	15	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220369570	T	T	220369570	1	4	54	0	1	0	0	0	0	0	0	0	6558	841	29	4		4	GMPPA	2	220369570	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	964	220369570	22829803	854	57448											
GMPPA	29926	broad.mit.edu	37	chr2	220369661	220369661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggtaaagggctgaatgGggatgagaatgtgaaaatgg	19	1	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220369661	T	T	220369661	1	4	54	0	1	0	0	0	0	0	0	0	6558	1247	43	2		2	GMPPA	2	220369661	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	91	220369661	22829712	855	57449											
FARSB	10056	broad.mit.edu	37	chr2	223511718	223511718	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaagctctaggtctttctGagagaagaaagtcaaaacct	8	7	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223511718	A	A	223511718	1	1	54	0	1	0	0	0	0	0	0	0	5737	1305	45	4		4	FARSB	2	223511718	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3142057	223511718	19687655	856	57450											
SCG2	7857	broad.mit.edu	37	chr2	224464089	224464089	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaagaaataattgatcAttgaggtgaggaaaaaacat	9	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224464089	C	C	224464089	1	2	54	0	1	0	0	0	0	0	0	0	14003	232	8	5		5	SCG2	2	224464089	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	952371	224464089	18735284	857	57451											
SERPINE2	5270	broad.mit.edu	37	chr2	224847442	224847442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgaatcaaacatgtcaGtaatgccaagaactttcagc	7	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224847442	T	T	224847442	3	4	54	1	0	0	0	0	1	0	0	0	14225	1029	36	3	271	3	SERPINE2	2	224847442	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	383353	224847442	18351931	858	57452											
DOCK10	55619	broad.mit.edu	37	chr2	225659773	225659773	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaaaacagtccttatacgCttagtcaggtccttcacctc	5	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225659773	G	G	225659773	3	3	54	1	0	0	0	0	1	0	0	0	4725	796	28	4	1631	4	DOCK10	2	225659773	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	812331	225659773	17539600	859	57453											
RHBDD1	84236	broad.mit.edu	37	chr2	227819887	227819887	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggctctgcctaacatctTgatgatatcgtcagggagat	10	10	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227819887	C	C	227819887	1	2	54	0	1	0	0	0	0	0	0	0	13425	1827	63	5		5	RHBDD1	2	227819887	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2160114	227819887	15379486	860	57454											
COL4A3	1285	broad.mit.edu	37	chr2	228118863	228118863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggagacaagggagcaatGggcgagcctggacctcctgg	17	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228118863	T	T	228118863	3	4	54	1	0	0	0	0	1	0	0	0	3723	1348	47	2	855	2	COL4A3	2	228118863	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	298976	228118863	15080510	861	57455											
SP140	11262	broad.mit.edu	37	chr2	231109664	231109664	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattcagcaggagcatcctgAggtctgtgctctcatcactg	11	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231109664	T	T	231109664	1	4	54	0	1	0	0	0	0	0	0	0	15076	319	11	5		5	SP140	2	231109664	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2990801	231109664	12089709	862	57456											
SP100	6672	broad.mit.edu	37	chr2	231359138	231359138	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctgtttgcaggaaaaaaGagaaggcatagatctaaagt	10	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231359138	C	C	231359138	3	2	54	1	0	0	0	0	1	0	0	0	15074	933	33	4	1678	4	SP100	2	231359138	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	249474	231359138	11840235	863	57457											
GPR55	9290	broad.mit.edu	37	chr2	231774928	231774928	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ataaagctgtttctcaccagGaactgcaggaagaaccccag	9	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231774928	C	C	231774928	3	2	54	1	0	0	0	0	1	0	0	0	6764	1165	41	4	213	4	GPR55	2	231774928	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	415790	231774928	11424445	864	57458											
CHRNG	1146	broad.mit.edu	37	chr2	233409479	233409479	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accttaccctttctctttatCagagaaaggcccggagttag	8	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233409479	G	G	233409479	1	3	54	0	1	0	0	0	0	0	0	0	3427	841	29	4		4	CHRNG	2	233409479	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1634551	233409479	9789894	865	57459											
NGEF	25791	broad.mit.edu	37	chr2	233834906	233834906	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagaccagcattcctcaTgatctgccatctcttacctc	4	17	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233834906	G	G	233834906	1	3	54	0	1	0	0	0	0	0	0	0	10489	1479	51	5		5	NGEF	2	233834906	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	425427	233834906	9364467	866	57460											
INPP5D	3635	broad.mit.edu	37	chr2	234076243	234076243	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggagagctaggtgcagtgGagagggctggagggcagaaa	20	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234076243	C	C	234076243	1	2	54	0	1	0	0	0	0	0	0	0	7826	1189	41	4		4	INPP5D	2	234076243	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	241337	234076243	9123130	867	57461											
TRPM8	79054	broad.mit.edu	37	chr2	234891745	234891745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcggtgtggatggtgGcctttggcgtggccaggcaa	17	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234891745	T	T	234891745	3	4	54	1	0	0	0	0	1	0	0	0	16717	1203	42	3	2712	3	TRPM8	2	234891745	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	815502	234891745	8307628	868	57462											
IQCA1	79781	broad.mit.edu	37	chr2	237317566	237317566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcacgatgtgggtcatGccaaccttgtatcccaggaa	10	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237317566	T	T	237317566	1	4	54	0	1	0	0	0	0	0	0	0	7872	1334	46	3		3	IQCA1	2	237317566	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2425821	237317566	5881807	869	57463											
COL6A3	1293	broad.mit.edu	37	chr2	238274404	238274404	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accttcagggtgtcctccgtGaggacgtaggggtgctggct	16	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238274404	A	A	238274404	2	1	54	1	0	0	0	0	0	0	0	1	3733	1277	45	4		4	COL6A3	2	238274404	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	956838	238274404	4924969	870	57464											
COL6A3	1293	broad.mit.edu	37	chr2	238283634	238283634	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgccctcagagccatcaaGcagaaacaccacgtcctttt	7	15	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238283634	A	A	238283634	3	1	54	1	0	0	0	0	1	0	0	0	3733	971	34	4	6628	4	COL6A3	2	238283634	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9230	238283634	4915739	871	57465											
C2orf85	285093	broad.mit.edu	37	chr2	242814614	242814614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagcccggttggcgtgGcccagggctggggccccatc	16	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242814614	T	T	242814614	3	4	54	1	0	0	0	0	1	0	0	0	2222	1203	42	3	913	3	C2orf85	2	242814614	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4530980	242814614	384759	872	57466											
CHL1	10752	broad.mit.edu	37	chr3	384665	384665	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttccgtttttttatttcAgtaaagcatgctaatgactc	5	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	384665	T	T	384665	1	4	54	0	1	0	0	0	0	0	0	0	3380	202	7	5		5	CHL1	3	384665	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08		384665	197637765	873	57467											
CHL1	10752	broad.mit.edu	37	chr3	384789	384789	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattttgaattttttctttAatatcctcttaagtttatta	3	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	384789	C	C	384789	1	2	54	0	1	0	0	0	0	0	0	0	3380	377	13	5		5	CHL1	3	384789	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	124	384789	197637641	874	57468											
CHL1	10752	broad.mit.edu	37	chr3	404927	404927	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagaagtgaaacccctGgagggcaggcggtatcatat	15	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	404927	T	T	404927	2	4	54	1	0	0	0	0	0	0	0	1	3380	1335	47	2		2	CHL1	3	404927	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	20138	404927	197617503	875	57469											
CHL1	10752	broad.mit.edu	37	chr3	431256	431256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgaacaactactgcatgCaaagaggatgtactagccgt	10	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	431256	A	A	431256	1	1	54	0	1	0	0	0	0	0	0	0	3380	725	25	3		3	CHL1	3	431256	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	26329	431256	197591174	876	57470											
CHL1	10752	broad.mit.edu	37	chr3	432771	432771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttagtgaatttcatttaaCagtcttagcctataactcta	4	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	432771	A	A	432771	3	1	54	1	0	0	0	0	1	0	0	0	3380	478	17	3	2798	3	CHL1	3	432771	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1515	432771	197589659	877	57471											
CNTN6	27255	broad.mit.edu	37	chr3	1367352	1367352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacccgcattgaagctcctGcatgtcccctccctcaaatc	5	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1367352	T	T	1367352	1	4	54	0	1	0	0	0	0	0	0	0	3677	1334	46	3		3	CNTN6	3	1367352	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	934581	1367352	196655078	878	57472											
CNTN6	27255	broad.mit.edu	37	chr3	1443275	1443275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatcaattaagttactaaGgaatgaaacatgtgacaccc	6	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1443275	T	T	1443275	1	4	54	0	1	0	0	0	0	0	0	0	3677	1015	35	2		2	CNTN6	3	1443275	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	75923	1443275	196579155	879	57473											
CNTN4	152330	broad.mit.edu	37	chr3	2944634	2944634	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgctggcatgtatcagtgTttggcagagaataaacatgg	13	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2944634	A	A	2944634	4	1	54	1	0	0	0	0	0	1	0	0	3675	1731	60	5	1186	5	CNTN4	3	2944634	Nonsense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1501359	2944634	195077796	880	57474											
SUMF1	285362	broad.mit.edu	37	chr3	4458766	4458766	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccatgtctactgggagcctCagttctcagcagctgccacc	9	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4458766	T	T	4458766	1	4	54	0	1	0	0	0	0	0	0	0	15503	841	29	4		4	SUMF1	3	4458766	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1514132	4458766	193563664	881	57475											
ITPR1	3708	broad.mit.edu	37	chr3	4856882	4856882	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaggaagagatcttgaAgaccacgtgctttatctgtg	12	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4856882	T	T	4856882	3	4	54	1	0	0	0	0	1	0	0	0	7990	72	3	5	8073	5	ITPR1	3	4856882	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	398116	4856882	193165548	882	57476											
GRM7	2917	broad.mit.edu	37	chr3	7611034	7611034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtatctagctccgctgGtggggacttggagaaccttt	12	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7611034	T	T	7611034	1	4	54	0	1	0	0	0	0	0	0	0	6868	1276	44	3		3	GRM7	3	7611034	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2754152	7611034	190411396	883	57477											
C3orf32	51066	broad.mit.edu	37	chr3	8766179	8766179	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcagaggtgccaagttcatCagatatatgcaacctaatga	10	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8766179	G	G	8766179	1	3	54	0	1	0	0	0	0	0	0	0	2244	841	29	4		4	C3orf32	3	8766179	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1155145	8766179	189256251	884	57478											
MTMR14	64419	broad.mit.edu	37	chr3	9711261	9711261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgttcatattgtccgtggGtatttgtcactggttcaggt	11	7	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9711261	T	T	9711261	1	4	54	0	1	0	0	0	0	0	0	0	10036	1276	44	3		3	MTMR14	3	9711261	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	945082	9711261	188311169	885	57479											
TTLL3	26140	broad.mit.edu	37	chr3	9874678	9874678	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagctcagaaacgcctctttGaccaggtgcctcagaaagta	9	12	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9874678	A	A	9874678	1	1	54	0	1	0	0	0	0	0	0	0	16854	1305	45	4		4	TTLL3	3	9874678	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	163417	9874678	188147752	886	57480											
SLC6A11	6538	broad.mit.edu	37	chr3	10966640	10966640	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacgttaaacatatgattGccatatgacccagcaattcc	6	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10966640	A	A	10966640	1	1	54	0	1	0	0	0	0	0	0	0	14788	1334	46	4		4	SLC6A11	3	10966640	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1091962	10966640	187055790	887	57481											
SYN2	6854	broad.mit.edu	37	chr3	12195671	12195671	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccaaagtgtaagtactttGagatcagggcctatagactg	11	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12195671	T	T	12195671	1	4	54	0	1	0	0	0	0	0	0	0	15560	1305	45	3		3	SYN2	3	12195671	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1229031	12195671	185826759	888	57482											
PPARG	5468	broad.mit.edu	37	chr3	12369711	12369711	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagaaaaagtcctacctgGagcggagcgttaaggaagct	12	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12369711	T	T	12369711	1	4	54	0	1	0	0	0	0	0	0	0	12395	1189	41	3		3	PPARG	3	12369711	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	174040	12369711	185652719	889	57483											
PPARG	5468	broad.mit.edu	37	chr3	12458213	12458213	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatttgcagccattcgttaTctatgacatgaattccttaa	5	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12458213	A	A	12458213	3	1	54	1	0	0	0	0	1	0	0	0	12395	1435	50	5	852	5	PPARG	3	12458213	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	88502	12458213	185564217	890	57484											
NUP210	23225	broad.mit.edu	37	chr3	13381837	13381837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaggactactgtgcccCaagcccatggcgccaagcat	11	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13381837	A	A	13381837	1	1	54	0	1	0	0	0	0	0	0	0	10855	609	21	2		2	NUP210	3	13381837	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	923624	13381837	184640593	891	57485											
EAF1	85403	broad.mit.edu	37	chr3	15476049	15476049	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatgacatcaaaagaggtaGagaacattttctggatccat	10	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15476049	A	A	15476049	1	1	54	0	1	0	0	0	0	0	0	0	4915	957	33	4		4	EAF1	3	15476049	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2094212	15476049	182546381	892	57486											
GALNTL2	117248	broad.mit.edu	37	chr3	16168502	16168502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggcacatgggcagccaCgggtggtcatcctcgtctta	14	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16168502	A	A	16168502	1	1	54	0	1	0	0	0	0	0	0	0	6284	551	19	3		3	GALNTL2	3	16168502	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	692453	16168502	181853928	893	57487											
TBC1D5	9779	broad.mit.edu	37	chr3	17255725	17255725	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgcccatagttttgcTgtgtgagcgagaacgtgaga	12	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17255725	A	A	17255725	3	1	54	1	0	0	0	0	1	0	0	0	15745	1580	55	5	681	5	TBC1D5	3	17255725	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1087223	17255725	180766705	894	57488											
KCNH8	131096	broad.mit.edu	37	chr3	19432258	19432258	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaataaagatgccctgatGcccagtgatatgcaggccag	10	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19432258	A	A	19432258	1	1	54	0	1	0	0	0	0	0	0	0	8108	1334	46	4		4	KCNH8	3	19432258	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2176533	19432258	178590172	895	57489											
ZNF385D	79750	broad.mit.edu	37	chr3	21464191	21464191	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcaacatatgcaaatcaatAattgtgattcatcacgtaaa	4	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21464191	T	T	21464191	1	4	54	0	1	0	0	0	0	0	0	0	18004	377	13	5		5	ZNF385D	3	21464191	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2031933	21464191	176558239	896	57490											
ZNF385D	79750	broad.mit.edu	37	chr3	21853902	21853902	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcggggcaccgcctcacctCagaagtgcaagaggttgggg	17	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21853902	A	A	21853902	1	1	54	0	1	0	0	0	0	0	0	0	18004	841	29	3		3	ZNF385D	3	21853902	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	389711	21853902	176168528	897	57491											
RARB	5915	broad.mit.edu	37	chr3	25246002	25246002	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaggcactctgatttttaGaattttcagtttttctgctc	8	7	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25246002	T	T	25246002	1	4	54	0	1	0	0	0	0	0	0	0	13161	957	33	3		3	RARB	3	25246002	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3392100	25246002	172776428	898	57492											
RARB	5915	broad.mit.edu	37	chr3	25578292	25578292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtttgtggggtaagtGgcagagggttcttcatggga	17	3	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25578292	T	T	25578292	1	4	54	0	1	0	0	0	0	0	0	0	13161	1363	47	2		2	RARB	3	25578292	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	332290	25578292	172444138	899	57493											
RARB	5915	broad.mit.edu	37	chr3	25602716	25602716	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgtgttgtaacagatgTgggtgggatctttgagtggt	16	3	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25602716	A	A	25602716	1	1	54	0	1	0	0	0	0	0	0	0	13161	1711	59	5		5	RARB	3	25602716	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	24424	25602716	172419714	900	57494											
RARB	5915	broad.mit.edu	37	chr3	25637962	25637962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcctggatcaatgccacCtctcattcaagaaatgctgg	7	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25637962	A	A	25637962	3	1	54	1	0	0	0	0	1	0	0	0	13161	681	24	2	1232	2	RARB	3	25637962	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	35246	25637962	172384468	901	57495											
TOP2B	7155	broad.mit.edu	37	chr3	25642491	25642491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagtaaagcaatttaaaaCaaaatagatacctagcctct	6	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25642491	A	A	25642491	1	1	54	0	1	0	0	0	0	0	0	0	16490	493	17	3		3	TOP2B	3	25642491	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4529	25642491	172379939	902	57496											
NGLY1	55768	broad.mit.edu	37	chr3	25781055	25781055	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattattctgattttaccatCcagggcacccaccttgggaa	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25781055	A	A	25781055	1	1	54	0	1	0	0	0	0	0	0	0	10493	870	30	3		3	NGLY1	3	25781055	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	138564	25781055	172241375	903	57497											
LRRC3B	116135	broad.mit.edu	37	chr3	26729888	26729888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatgactgttcccatctGtattagcctattcctagatt	5	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26729888	T	T	26729888	1	4	54	0	1	0	0	0	0	0	0	0	9083	1392	48	3		3	LRRC3B	3	26729888	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	948833	26729888	171292542	904	57498											
NEK10	152110	broad.mit.edu	37	chr3	27161262	27161262	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactattacctgtagggtcaTttggggacaggctgtttcca	11	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27161262	A	A	27161262	3	1	54	1	0	0	0	0	1	0	0	0	10417	1508	52	5		5	NEK10	3	27161262	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	431374	27161262	170861168	905	57499											
NEK10	152110	broad.mit.edu	37	chr3	27233413	27233413	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatactactgcaatattgcaTgtaactatttttctaacttt	3	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27233413	C	C	27233413	1	2	54	0	1	0	0	0	0	0	0	0	10417	1479	51	5		5	NEK10	3	27233413	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	72151	27233413	170789017	906	57500											
NEK10	152110	broad.mit.edu	37	chr3	27279497	27279497	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atactatagccaataacaaaAtattcaccaacaagtgtagt	4	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27279497	G	G	27279497	1	3	54	0	1	0	0	0	0	0	0	0	10417	116	4	5		5	NEK10	3	27279497	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	46084	27279497	170742933	907	57501											
SLC4A7	9497	broad.mit.edu	37	chr3	27465745	27465745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttatgaatattataaaagCaaatgtgcaaggttaaaaaa	6	2	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27465745	T	T	27465745	1	4	54	0	1	0	0	0	0	0	0	0	14772	725	25	4		4	SLC4A7	3	27465745	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	186248	27465745	170556685	908	57502											
OSBPL10	114884	broad.mit.edu	37	chr3	31743990	31743990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaaaaccaattcagagCctgagtttggctaaaatgaa	8	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31743990	A	A	31743990	3	1	54	1	0	0	0	0	1	0	0	0	11369	739	26	3	1212	3	OSBPL10	3	31743990	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4278245	31743990	166278440	909	57503											
ARPP21	10777	broad.mit.edu	37	chr3	35730472	35730472	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggagttctgtcatgtggGgtttgtgcccttgttattta	14	5	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35730472	A	A	35730472	1	1	54	0	1	0	0	0	0	0	0	0	982	1247	43	4		4	ARPP21	3	35730472	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3986482	35730472	162291958	910	57504											
ARPP21	10777	broad.mit.edu	37	chr3	35750563	35750563	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaatatttgcacacgatGtgagtagttgttttaattgc	10	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35750563	T	T	35750563	5	4	54	1	0	0	0	0	0	0	1	0	982	1391	48	3	945	3	ARPP21	3	35750563	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	20091	35750563	162271867	911	57505											
MLH1	4292	broad.mit.edu	37	chr3	37067448	37067448	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggagggggatacaacaaaGgggacttcagaaatgtcaga	14	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37067448	A	A	37067448	2	1	54	1	0	0	0	0	0	0	0	1	9710	991	35	4		4	MLH1	3	37067448	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1316885	37067448	160954982	912	57506											
GOLGA4	2803	broad.mit.edu	37	chr3	37379195	37379195	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgactttaatcagtgattcGaaattgaaagagcaagagtt	9	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37379195	T	T	37379195	2	4	54	1	0	0	0	0	0	0	0	1	6619	1045	37	3		3	GOLGA4	3	37379195	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	311747	37379195	160643235	913	57507											
DLEC1	9940	broad.mit.edu	37	chr3	38134218	38134218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccgagaggaggagggtGggaggcggggagggtggaag	26	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38134218	T	T	38134218	1	4	54	0	1	0	0	0	0	0	0	0	4592	1363	47	2		2	DLEC1	3	38134218	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	755023	38134218	159888212	914	57508											
XYLB	9942	broad.mit.edu	37	chr3	38401944	38401944	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctatccccaggctgtctCactggcagactcggtgattt	9	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38401944	T	T	38401944	1	4	54	0	1	0	0	0	0	0	0	0	17589	841	29	4		4	XYLB	3	38401944	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	267726	38401944	159620486	915	57509											
SCN5A	6331	broad.mit.edu	37	chr3	38592978	38592978	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaggatgcggcctattcGggccaggcggatgactcgga	16	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38592978	T	T	38592978	2	4	54	1	0	0	0	0	0	0	0	1	14035	1124	39	1		1	SCN5A	3	38592978	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	191034	38592978	159429452	916	57510											
SCN10A	6336	broad.mit.edu	37	chr3	38763741	38763741	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggggcagggactatgcctCcccttaccagagatccactg	12	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38763741	T	T	38763741	1	4	54	0	1	0	0	0	0	0	0	0	14025	870	30	4		4	SCN10A	3	38763741	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	170763	38763741	159258689	917	57511											
SCN11A	11280	broad.mit.edu	37	chr3	38945445	38945445	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgttgatgatgatgcagaTggtgatggccagctcagtaa	14	5	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38945445	C	C	38945445	3	2	54	1	0	0	0	0	1	0	0	0	14026	1464	51	5	3682	5	SCN11A	3	38945445	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	181704	38945445	159076985	918	57512											
XIRP1	165904	broad.mit.edu	37	chr3	39228314	39228314	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctgctggagctcagggtCcatgtcttcaatattcccac	9	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39228314	T	T	39228314	3	4	54	1	0	0	0	0	1	0	0	0	17556	855	30	4	2912	4	XIRP1	3	39228314	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	282869	39228314	158794116	919	57513											
XIRP1	165904	broad.mit.edu	37	chr3	39230226	39230226	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggatggcacacaggggctcCgtttggaagagcttcactgt	14	9	1	1	rs141262169	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39230226	G	G	39230226	2	3	54	1	0	0	0	0	0	0	0	1	17556	639	23	4		4	XIRP1	3	39230226	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1912	39230226	158792204	920	57514											
XIRP1	165904	broad.mit.edu	37	chr3	39230525	39230525	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttggctcctggtctgtgcTgttggcaaaggagccttcct	14	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39230525	A	A	39230525	3	1	54	1	0	0	0	0	1	0	0	0	17556	1580	55	5	5123	5	XIRP1	3	39230525	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	299	39230525	158791905	921	57515											
CCR8	1237	broad.mit.edu	37	chr3	39374753	39374753	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagaagttcaagaaacacCtctcagaaatatttcagaaa	8	7	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39374753	T	T	39374753	3	4	54	1	0	0	0	0	1	0	0	0	2977	681	24	4	933	4	CCR8	3	39374753	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	144228	39374753	158647677	922	57516											
MYRIP	25924	broad.mit.edu	37	chr3	39917379	39917379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctgagttcaattcctgGgtatccttgttgactttctg	10	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39917379	T	T	39917379	1	4	54	0	1	0	0	0	0	0	0	0	10194	1247	43	2		2	MYRIP	3	39917379	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	542626	39917379	158105051	923	57517											
ULK4	54986	broad.mit.edu	37	chr3	41645926	41645926	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctgatatagatgaaaaaaCagaatgtaggaagcttatgt	9	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41645926	G	G	41645926	1	3	54	0	1	0	0	0	0	0	0	0	17104	493	17	4		4	ULK4	3	41645926	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1728547	41645926	156376504	924	57518											
ULK4	54986	broad.mit.edu	37	chr3	41983564	41983564	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accacctatccacggttactCcacagacctgcggtgttcaa	7	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41983564	A	A	41983564	1	1	54	0	1	0	0	0	0	0	0	0	17104	870	30	3		3	ULK4	3	41983564	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	337638	41983564	156038866	925	57519											
ANO10	55129	broad.mit.edu	37	chr3	43428653	43428653	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccactgctgctaggctgCgaatctgcccagcacgttac	10	15	1	0	rs115300959	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43428653	G	G	43428653	1	3	54	0	1	0	0	0	0	0	0	0	696	783	27	4		4	ANO10	3	43428653	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1445089	43428653	154593777	926	57520											
C3orf23	285343	broad.mit.edu	37	chr3	44441874	44441874	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagattgccaagttattttGaccttcagaggaggctgatg	11	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44441874	C	C	44441874	3	2	54	1	0	0	0	0	1	0	0	0	2238	1290	45	4	995	4	C3orf23	3	44441874	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1013221	44441874	153580556	927	57521											
TGM4	7047	broad.mit.edu	37	chr3	44951712	44951712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgatgtgctgctgggaaaCtctgttaatttcaccgtgat	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44951712	A	A	44951712	3	1	54	1	0	0	0	0	1	0	0	0	15955	564	20	3	1500	3	TGM4	3	44951712	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	509838	44951712	153070718	928	57522											
EXOSC7	23016	broad.mit.edu	37	chr3	45038690	45038690	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaagcagtgtcgacttaaaGaccctctgcattagtcctcg	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45038690	C	C	45038690	3	2	54	1	0	0	0	0	1	0	0	0	5362	933	33	4	380	4	EXOSC7	3	45038690	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	86978	45038690	152983740	929	57523											
SETD2	29072	broad.mit.edu	37	chr3	47084172	47084172	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcagatccaagagattatTtgtcacaaccatttcagact	7	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47084172	C	C	47084172	3	2	54	1	0	0	0	0	1	0	0	0	14244	1841	64	5	597	5	SETD2	3	47084172	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2045482	47084172	150938258	930	57524											
DHX30	22907	broad.mit.edu	37	chr3	47882657	47882657	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggattcccacgctccactCagggactcaaggtacagatg	10	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47882657	T	T	47882657	2	4	54	1	0	0	0	0	0	0	0	1	4544	813	29	4		4	DHX30	3	47882657	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	798485	47882657	150139773	931	57525											
MAP4	4134	broad.mit.edu	37	chr3	47912757	47912757	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttcttgacttctgcaggTtttccctcagtcttaatggc	7	11	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47912757	A	A	47912757	3	1	54	1	0	0	0	0	1	0	0	0	9350	1722	60	5	1115	5	MAP4	3	47912757	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	30100	47912757	150109673	932	57526											
COL7A1	1294	broad.mit.edu	37	chr3	48617238	48617238	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctctctggctccaggtcCtgtgtctacctgtgggggga	13	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48617238	T	T	48617238	3	4	54	1	0	0	0	0	1	0	0	0	3736	690	24	4	3948	4	COL7A1	3	48617238	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	704481	48617238	149405192	933	57527											
SLC25A20	788	broad.mit.edu	37	chr3	48899903	48899903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaatctggcaatccaggCaagaccttctgcagcagacc	10	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48899903	A	A	48899903	1	1	54	0	1	0	0	0	0	0	0	0	14597	725	25	3		3	SLC25A20	3	48899903	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	282665	48899903	149122527	934	57528											
QRICH1	54870	broad.mit.edu	37	chr3	49095211	49095211	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgactgtggtgcctggCcttggatctgcacctggacc	13	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49095211	T	T	49095211	3	4	54	1	0	0	0	0	1	0	0	0	12987	739	26	4	1940	4	QRICH1	3	49095211	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	195308	49095211	148927219	935	57529											
IP6K1	9807	broad.mit.edu	37	chr3	49765502	49765502	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacccaaatcatgcaagtGgcagcacctaggctctgagc	9	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49765502	A	A	49765502	1	1	54	0	1	0	0	0	0	0	0	0	7858	1363	47	4		4	IP6K1	3	49765502	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	670291	49765502	148256928	936	57530											
GRM2	2912	broad.mit.edu	37	chr3	51750113	51750113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgcatcatctggctggCattcctgcccatcttctatg	7	15	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51750113	A	A	51750113	3	1	54	1	0	0	0	0	1	0	0	0	6863	710	25	3	2334	3	GRM2	3	51750113	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1984611	51750113	146272317	937	57531											
IQCF1	132141	broad.mit.edu	37	chr3	51884122	51884122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcactctgtaaaatggaCcaatcagtgctctgtaaaat	7	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51884122	A	A	51884122	1	1	54	0	1	0	0	0	0	0	0	0	7877	522	18	3		3	IQCF1	3	51884122	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	134009	51884122	146138308	938	57532											
DNAH1	25981	broad.mit.edu	37	chr3	52416609	52416609	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagagaccaccaggaccaGgtggggccacagatgggcag	16	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52416609	T	T	52416609	1	4	54	0	1	0	0	0	0	0	0	0	4637	1015	35	2		2	DNAH1	3	52416609	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	532487	52416609	145605821	939	57533											
TMEM110	375346	broad.mit.edu	37	chr3	52894711	52894711	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggaccacatgctggcactGaccggggcaataggagaggg	16	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52894711	C	C	52894711	1	2	54	0	1	0	0	0	0	0	0	0	16150	1305	45	4		4	TMEM110	3	52894711	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	478102	52894711	145127719	940	57534											
CACNA1D	776	broad.mit.edu	37	chr3	53633376	53633376	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagcaaaatcacagattcCtgattatttctttagaataa	6	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53633376	T	T	53633376	1	4	54	0	1	0	0	0	0	0	0	0	2567	696	24	4		4	CACNA1D	3	53633376	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	738665	53633376	144389054	941	57535											
CACNA1D	776	broad.mit.edu	37	chr3	53695221	53695221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtctgagcaagaatatgGgattgcagggtgtgcctgtt	15	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53695221	T	T	53695221	1	4	54	0	1	0	0	0	0	0	0	0	2567	1247	43	2		2	CACNA1D	3	53695221	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	61845	53695221	144327209	942	57536											
CACNA2D3	55799	broad.mit.edu	37	chr3	54484587	54484587	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgccctccctggttcagggGaggggatgagttctcattat	13	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54484587	A	A	54484587	1	1	54	0	1	0	0	0	0	0	0	0	2576	1189	41	4		4	CACNA2D3	3	54484587	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	789366	54484587	143537843	943	57537											
CACNA2D3	55799	broad.mit.edu	37	chr3	54629127	54629127	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactgaatatgatgtgttggGacatttatgtgataatgtat	10	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54629127	A	A	54629127	1	1	54	0	1	0	0	0	0	0	0	0	2576	1189	41	4		4	CACNA2D3	3	54629127	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	144540	54629127	143393303	944	57538											
CACNA2D3	55799	broad.mit.edu	37	chr3	54804022	54804022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacctttcaccccaacaccCttactgaggagagcccttgc	7	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54804022	A	A	54804022	1	1	54	0	1	0	0	0	0	0	0	0	2576	696	24	2		2	CACNA2D3	3	54804022	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	174895	54804022	143218408	945	57539											
LRTM1	57408	broad.mit.edu	37	chr3	54952837	54952837	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaagagggcagggctgGtacagctcatgagggatcct	17	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54952837	T	T	54952837	4	4	54	1	0	0	0	0	0	1	0	0	9131	1256	44	3	354	3	LRTM1	3	54952837	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	148815	54952837	143069593	946	57540											
ERC2	26059	broad.mit.edu	37	chr3	55693535	55693535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttctaccccctaccaCctctctcaggtcccaatagt	3	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55693535	A	A	55693535	1	1	54	0	1	0	0	0	0	0	0	0	5253	522	18	3		3	ERC2	3	55693535	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	740698	55693535	142328895	947	57541											
ERC2	26059	broad.mit.edu	37	chr3	56183085	56183085	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtcctcagtgttcagcaCaccattggcttttaacatct	8	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56183085	T	T	56183085	3	4	54	1	0	0	0	0	1	0	0	0	5253	478	17	4	1690	4	ERC2	3	56183085	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	489550	56183085	141839345	948	57542											
APPL1	26060	broad.mit.edu	37	chr3	57303660	57303660	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtccttagcagtagccAgtcagaagagagtgatttgg	13	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57303660	T	T	57303660	3	4	54	1	0	0	0	0	1	0	0	0	819	188	7	5	2161	5	APPL1	3	57303660	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1120575	57303660	140718770	949	57543											
FAM107A	11170	broad.mit.edu	37	chr3	58589478	58589478	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttcccagcatccatgggtGattgtctgagaagggtgcag	13	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58589478	T	T	58589478	1	4	54	0	1	0	0	0	0	0	0	0	5435	1305	45	3		3	FAM107A	3	58589478	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1285818	58589478	139432952	950	57544											
FAM3D	131177	broad.mit.edu	37	chr3	58639444	58639444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttcatgctgaagctcatGtagcttcgaataaacatcca	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58639444	A	A	58639444	2	1	54	1	0	0	0	0	0	0	0	1	5610	1372	48	4		4	FAM3D	3	58639444	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	49966	58639444	139382986	951	57545											
FHIT	2272	broad.mit.edu	37	chr3	59933752	59933752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatggtatagatgtaccaCtgtttgtttaaccattcacc	6	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59933752	A	A	59933752	1	1	54	0	1	0	0	0	0	0	0	0	5934	580	20	3		3	FHIT	3	59933752	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1294308	59933752	138088678	952	57546											
FHIT	2272	broad.mit.edu	37	chr3	60932279	60932279	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtataaagacagggcgctGgggggaacgtcttcaataaa	14	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60932279	A	A	60932279	1	1	54	0	1	0	0	0	0	0	0	0	5934	1363	47	4		4	FHIT	3	60932279	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	998527	60932279	137090151	953	57547											
FHIT	2272	broad.mit.edu	37	chr3	61115166	61115166	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaaccagactctcctgatGaaatggctccactctggaga	9	11	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61115166	A	A	61115166	1	1	54	0	1	0	0	0	0	0	0	0	5934	1305	45	4		4	FHIT	3	61115166	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	182887	61115166	136907264	954	57548											
CADPS	8618	broad.mit.edu	37	chr3	62860687	62860688	+	Missense_Mutation	DNP	GG	AT	AT													tcatccgattcttcttcgctGgacgaagggtccagcatagt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	62860688	AT	AT	62860687	3	1	54	1	0	0	0	0	1	0	0	0	2596	1335	47	4	4236	4	CADPS	3	62860687	Missense_Mutation	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	1745521	62860687	135161743	955	57549											
ADAMTS9	56999	broad.mit.edu	37	chr3	64592756	64592756	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccacaagtgacactgcaCtggaagaaggaggacaaaag	12	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64592756	A	A	64592756	5	1	54	1	0	0	0	0	0	0	1	0	273	579	20	3	2521	3	ADAMTS9	3	64592756	Splice_Site	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1732069	64592756	133429674	956	57550											
FAM19A1	407738	broad.mit.edu	37	chr3	68395349	68395349	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggttttactttgttaccCaggctgtagtgcagtggcat	12	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68395349	T	T	68395349	1	4	54	0	1	0	0	0	0	0	0	0	5578	609	21	4		4	FAM19A1	3	68395349	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3802593	68395349	129627081	957	57551											
FAM19A1	407738	broad.mit.edu	37	chr3	68501853	68501853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggatgtctttgttttcCatcagggaggcatccagggc	13	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68501853	A	A	68501853	1	1	54	0	1	0	0	0	0	0	0	0	5578	609	21	2		2	FAM19A1	3	68501853	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	106504	68501853	129520577	958	57552											
FAM19A4	151647	broad.mit.edu	37	chr3	68811718	68811718	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggtctatttgcagggtaTggtttttgctatgcacttct	11	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68811718	C	C	68811718	1	2	54	0	1	0	0	0	0	0	0	0	5581	1479	51	5		5	FAM19A4	3	68811718	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	309865	68811718	129210712	959	57553											
MITF	4286	broad.mit.edu	37	chr3	69983369	69983369	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccagatctggactatttcAgaataacactaagatattgt	7	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69983369	T	T	69983369	1	4	54	0	1	0	0	0	0	0	0	0	9689	203	7	5		5	MITF	3	69983369	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1171651	69983369	128039061	960	57554											
PPP4R2	151987	broad.mit.edu	37	chr3	73096425	73096425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagctcctgagccaagaGgtcctcccaaccctaatgtc	7	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73096425	T	T	73096425	3	4	54	1	0	0	0	0	1	0	0	0	12505	1000	35	2	215	2	PPP4R2	3	73096425	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3113056	73096425	124926005	961	57555											
PPP4R2	151987	broad.mit.edu	37	chr3	73113183	73113183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgggcctgggacacccaGgccacttaatcgaccaaagg	11	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73113183	T	T	73113183	3	4	54	1	0	0	0	0	1	0	0	0	12505	1000	35	2	550	2	PPP4R2	3	73113183	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16758	73113183	124909247	962	57556											
ROBO2	6092	broad.mit.edu	37	chr3	77542422	77542422	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatttctcaggaggccaaTtaaccaggtggtactggagg	12	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77542422	G	G	77542422	3	3	54	1	0	0	0	0	1	0	0	0	13625	1493	52	5	715	5	ROBO2	3	77542422	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	4429239	77542422	120480008	963	57557											
ROBO2	6092	broad.mit.edu	37	chr3	77623727	77623727	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgcaggcgacatcttcGtggcagaatttagatgccaa	12	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77623727	A	A	77623727	2	1	54	1	0	0	0	0	0	0	0	1	13625	1132	40	4		4	ROBO2	3	77623727	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	81305	77623727	120398703	964	57558											
ROBO2	6092	broad.mit.edu	37	chr3	77651201	77651201	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcactgaggctgatagcttgGcgatggttgtatatcatcta	11	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77651201	C	C	77651201	1	2	54	0	1	0	0	0	0	0	0	0	13625	1218	42	4		4	ROBO2	3	77651201	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27474	77651201	120371229	965	57559											
ROBO2	6092	broad.mit.edu	37	chr3	77666736	77666736	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtctggaagatgaactGgaagaagatgatgatagggt	15	3	1	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77666736	T	T	77666736	2	4	54	1	0	0	0	0	0	0	0	1	13625	1335	47	2		2	ROBO2	3	77666736	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15535	77666736	120355694	966	57560											
ROBO2	6092	broad.mit.edu	37	chr3	77683990	77683990	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtgctataatgtcattctCtagaacccattccctttatt	5	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77683990	T	T	77683990	1	4	54	0	1	0	0	0	0	0	0	0	13625	928	32	4		4	ROBO2	3	77683990	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17254	77683990	120338440	967	57561											
ROBO1	6091	broad.mit.edu	37	chr3	79293191	79293191	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggatccagtttcagctttCtgcatatggctaaccctcac	8	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79293191	T	T	79293191	1	4	54	0	1	0	0	0	0	0	0	0	13624	928	32	4		4	ROBO1	3	79293191	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1609201	79293191	118729239	968	57562											
ROBO1	6091	broad.mit.edu	37	chr3	79384756	79384756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgaggcctccccagcCatgtggaactgagtcaatta	9	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384756	A	A	79384756	1	1	54	0	1	0	0	0	0	0	0	0	13624	609	21	2		2	ROBO1	3	79384756	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	91565	79384756	118637674	969	57563											
CADM2	253559	broad.mit.edu	37	chr3	85303423	85303423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggtgtggagtttccatGccctgtctagggcaccaccc	13	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85303423	T	T	85303423	1	4	54	0	1	0	0	0	0	0	0	0	2593	1334	46	3		3	CADM2	3	85303423	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5918667	85303423	112719007	970	57564											
CADM2	253559	broad.mit.edu	37	chr3	85309059	85309059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaaatcgttgtgccagGgtttcctagtgcagacacaa	9	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85309059	T	T	85309059	1	4	54	0	1	0	0	0	0	0	0	0	2593	1247	43	2		2	CADM2	3	85309059	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5636	85309059	112713371	971	57565											
CADM2	253559	broad.mit.edu	37	chr3	85709800	85709800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggagtttatcagcaggGggcaggttgatccctgtggc	15	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85709800	T	T	85709800	1	4	54	0	1	0	0	0	0	0	0	0	2593	1247	43	2		2	CADM2	3	85709800	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	400741	85709800	112312630	972	57566											
CADM2	253559	broad.mit.edu	37	chr3	85801607	85801607	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctctcccttctccttatgtCtcatatgtgtgcgtgcacac	6	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85801607	T	T	85801607	1	4	54	0	1	0	0	0	0	0	0	0	2593	928	32	4		4	CADM2	3	85801607	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	91807	85801607	112220823	973	57567											
CADM2	253559	broad.mit.edu	37	chr3	85961574	85961574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcaagacattcactgtcaGcagcacactggacttccgag	9	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85961574	T	T	85961574	3	4	54	1	0	0	0	0	1	0	0	0	2593	971	34	3	643	3	CADM2	3	85961574	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	159967	85961574	112060856	974	57568											
CADM2	253559	broad.mit.edu	37	chr3	86063491	86063491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggggaaaatctccaggGgcaaacctctgatgtcttat	10	9	3	1	rs12629171	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86063491	T	T	86063491	1	4	54	0	1	0	0	0	0	0	0	0	2593	1247	43	2		2	CADM2	3	86063491	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	101917	86063491	111958939	975	57569											
CHMP2B	25978	broad.mit.edu	37	chr3	87302706	87302706	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatagtttctgcctaccAcgtttgtcacttaattgttt	7	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87302706	T	T	87302706	1	4	54	0	1	0	0	0	0	0	0	0	3386	174	6	5		5	CHMP2B	3	87302706	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1239215	87302706	110719724	976	57570											
EPHA3	2042	broad.mit.edu	37	chr3	89462476	89462476	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaatcacgattgctcagtcTctgaaacctaagtatattgc	7	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89462476	A	A	89462476	1	1	54	0	1	0	0	0	0	0	0	0	5210	1566	54	5		5	EPHA3	3	89462476	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2159770	89462476	108559954	977	57571											
NSUN3	63899	broad.mit.edu	37	chr3	93794825	93794825	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgttctctgccatttgccAcacttgcatgatattgtctt	6	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93794825	T	T	93794825	1	4	54	0	1	0	0	0	0	0	0	0	10774	174	6	5		5	NSUN3	3	93794825	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4332349	93794825	104227605	978	57572											
EPHA6	285220	broad.mit.edu	37	chr3	96608271	96608272	+	Intron	DNP	GG	TT	TT													tcacagttctgtgtggctaaGgaggcctcacagtcagggcg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	96608272	TT	TT	96608271	1	4	54	0	1	0	0	0	0	0	0	0	5213	1015	35	2		2	EPHA6	3	96608271	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	2813446	96608271	101414159	979	57573											
EPHA6	285220	broad.mit.edu	37	chr3	96846343	96846343	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggccaaggcgggcagatCatctgaggttaggagttccg	17	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96846343	A	A	96846343	1	1	54	0	1	0	0	0	0	0	0	0	5213	841	29	3		3	EPHA6	3	96846343	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	238072	96846343	101176087	980	57574											
EPHA6	285220	broad.mit.edu	37	chr3	97064224	97064224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaactccatgctgatatgaGgtactttgctaagaatcttt	9	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97064224	T	T	97064224	1	4	54	0	1	0	0	0	0	0	0	0	5213	1015	35	2		2	EPHA6	3	97064224	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	217881	97064224	100958206	981	57575											
OR5H6	79295	broad.mit.edu	37	chr3	97983526	97983526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgttttctcttggcaaCaatggcatatgatcgctatg	9	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97983526	A	A	97983526	3	1	54	1	0	0	0	0	1	0	0	0	11257	478	17	3	400	3	OR5H6	3	97983526	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	919302	97983526	100038904	982	57576											
OR5K4	403278	broad.mit.edu	37	chr3	98073342	98073342	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaccattgctactgtcttGatctcttatctctgcatcct	4	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98073342	T	T	98073342	3	4	54	1	0	0	0	0	1	0	0	0	11263	1281	45	3	647	3	OR5K4	3	98073342	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	89816	98073342	99949088	983	57577											
C3orf26	84319	broad.mit.edu	37	chr3	99868988	99868988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgacttacttgtcagGcatactgtctgtcctttcag	9	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99868988	T	T	99868988	1	4	54	0	1	0	0	0	0	0	0	0	2240	1218	42	3		3	C3orf26	3	99868988	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1795646	99868988	98153442	984	57578											
C3orf26	84319	broad.mit.edu	37	chr3	99895168	99895168	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactctcttcctgtctctttCaggtggccttaatttgagcc	7	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99895168	T	T	99895168	1	4	54	0	1	0	0	0	0	0	0	0	2240	841	29	4		4	C3orf26	3	99895168	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	26180	99895168	98127262	985	57579											
C3orf26	84319	broad.mit.edu	37	chr3	99896738	99896738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagaggccaaggcaggtGgatcacttgaggccaagagt	15	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99896738	T	T	99896738	1	4	54	0	1	0	0	0	0	0	0	0	2240	1363	47	2		2	C3orf26	3	99896738	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1570	99896738	98125692	986	57580											
LNP1	348801	broad.mit.edu	37	chr3	100148663	100148663	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctggagagaggaggatcaGagaggactccgggaacgcca	17	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100148663	C	C	100148663	3	2	54	1	0	0	0	0	1	0	0	0	8937	933	33	4	92	4	LNP1	3	100148663	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	251925	100148663	97873767	987	57581											
GPR128	84873	broad.mit.edu	37	chr3	100374654	100374654	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaacatacatcctgaagAgggtcagatgtataattcat	7	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100374654	T	T	100374654	1	4	54	0	1	0	0	0	0	0	0	0	6706	319	11	5		5	GPR128	3	100374654	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	225991	100374654	97647776	988	57582											
ABI3BP	25890	broad.mit.edu	37	chr3	100497098	100497098	+	Intron	DEL	C	-	-													tagtaaaaccgaaatcatggCgggaaaaggaaggtacatga					rs9877951	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100497098	-	-	100497098	6	5	54	0	1	1	0	1	0	0	0	0	91	783	27	0		0	ABI3BP	3	100497098	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	122444	100497098	97525332	989	57583											
ABI3BP	25890	broad.mit.edu	37	chr3	100569680	100569680	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcatatgaggaaaaatatCaagaatacttgagggcttgc	9	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100569680	A	A	100569680	1	1	54	0	1	0	0	0	0	0	0	0	91	841	29	3		3	ABI3BP	3	100569680	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	72582	100569680	97452750	990	57584											
ABI3BP	25890	broad.mit.edu	37	chr3	100660498	100660498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctggtgaatttggatgaCtgaatgagacagactgaact	12	6	1	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100660498	A	A	100660498	1	1	54	0	1	0	0	0	0	0	0	0	91	580	20	3		3	ABI3BP	3	100660498	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	90818	100660498	97361932	991	57585											
ABI3BP	25890	broad.mit.edu	37	chr3	100678775	100678775	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctactgtcctacataatgtCtacatatgactacacaaagt	4	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100678775	G	G	100678775	1	3	54	0	1	0	0	0	0	0	0	0	91	928	32	4		4	ABI3BP	3	100678775	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18277	100678775	97343655	992	57586											
SENP7	57337	broad.mit.edu	37	chr3	101046534	101046534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagctttccacatactgCaataaatatactccacaatc	3	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101046534	A	A	101046534	3	1	54	1	0	0	0	0	1	0	0	0	14164	709	25	3	169	3	SENP7	3	101046534	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	367759	101046534	96975896	993	57587											
SENP7	57337	broad.mit.edu	37	chr3	101076390	101076390	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttccaaaaagtgatacTgagaagatatgaaaaatgtg	8	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101076390	A	A	101076390	1	1	54	0	1	0	0	0	0	0	0	0	14164	1595	55	5		5	SENP7	3	101076390	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	29856	101076390	96946040	994	57588											
ZPLD1	131368	broad.mit.edu	37	chr3	101833822	101833822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctccttggaacaccattGctagaccaccctagtcagcc	7	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101833822	T	T	101833822	1	4	54	0	1	0	0	0	0	0	0	0	18350	1334	46	3		3	ZPLD1	3	101833822	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	757432	101833822	96188608	995	57589											
ZPLD1	131368	broad.mit.edu	37	chr3	101941652	101941652	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccagtgaggaggcatctAgagaggcagtctggcccaag	15	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101941652	G	G	101941652	1	3	54	0	1	0	0	0	0	0	0	0	18350	435	15	5		5	ZPLD1	3	101941652	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	107830	101941652	96080778	996	57590											
ZPLD1	131368	broad.mit.edu	37	chr3	102104281	102104281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggatttttccaatgaGtaattggaattcctggagat	9	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102104281	T	T	102104281	1	4	54	0	1	0	0	0	0	0	0	0	18350	1044	36	3		3	ZPLD1	3	102104281	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	162629	102104281	95918149	997	57591											
ALCAM	214	broad.mit.edu	37	chr3	105262738	105262738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagaaattgagaaagcatGctccttcccttcattcattc	6	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105262738	T	T	105262738	1	4	54	0	1	0	0	0	0	0	0	0	487	1334	46	3		3	ALCAM	3	105262738	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3158457	105262738	92759692	998	57592											
BBX	56987	broad.mit.edu	37	chr3	107491621	107491621	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagatgaaactaggttacaGaaggaagcagaatttgaaaa	10	4	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107491621	A	A	107491621	2	1	54	1	0	0	0	0	0	0	0	1	1348	933	33	4		4	BBX	3	107491621	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2228883	107491621	90530809	999	57593											
HHLA2	11148	broad.mit.edu	37	chr3	108096082	108096082	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttgaacaacagacatttaGagtctatttttcttgcttct	5	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108096082	T	T	108096082	1	4	54	0	1	0	0	0	0	0	0	0	7162	957	33	3		3	HHLA2	3	108096082	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	604461	108096082	89926348	1000	57594											
MYH15	22989	broad.mit.edu	37	chr3	108160130	108160130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgatgaggagaaaattGttgccaacagctggaagtaa	12	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108160130	T	T	108160130	1	4	54	0	1	0	0	0	0	0	0	0	10128	1392	48	3		3	MYH15	3	108160130	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	64048	108160130	89862300	1001	57595											
MYH15	22989	broad.mit.edu	37	chr3	108183706	108183706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttctttaaaaacaccgGcactttcagtagggggtcag	10	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108183706	T	T	108183706	1	4	54	0	1	0	0	0	0	0	0	0	10128	1218	42	3		3	MYH15	3	108183706	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23576	108183706	89838724	1002	57596											
MYH15	22989	broad.mit.edu	37	chr3	108211572	108211572	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaggccaaggcaggagaaTcacttgaggccaggagtttg	17	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108211572	A	A	108211572	1	1	54	0	1	0	0	0	0	0	0	0	10128	1450	50	5		5	MYH15	3	108211572	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	27866	108211572	89810858	1003	57597											
KIAA1524	57650	broad.mit.edu	37	chr3	108284111	108284111	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccaattctaagagaattaTcttctaaagattaagaatat	5	5	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108284111	C	C	108284111	1	2	54	0	1	0	0	0	0	0	0	0	8309	1450	50	5		5	KIAA1524	3	108284111	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	72539	108284111	89738319	1004	57598											
DZIP3	9666	broad.mit.edu	37	chr3	108329944	108329944	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctttgttccttttttaatGctttggctgatcttagaatt	7	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108329944	C	C	108329944	1	2	54	0	1	0	0	0	0	0	0	0	4905	1334	46	4		4	DZIP3	3	108329944	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45833	108329944	89692486	1005	57599											
DZIP3	9666	broad.mit.edu	37	chr3	108392892	108392892	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctttacaagcacaccttCaacttctttctctttctctc	1	15	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108392892	T	T	108392892	1	4	54	0	1	0	0	0	0	0	0	0	4905	841	29	4		4	DZIP3	3	108392892	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	62948	108392892	89629538	1006	57600											
GUCA1C	9626	broad.mit.edu	37	chr3	108627009	108627009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaaacaatctccaggagatCctgatcttttgccatgccat	7	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108627009	A	A	108627009	3	1	54	1	0	0	0	0	1	0	0	0	6955	855	30	3	143	3	GUCA1C	3	108627009	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	234117	108627009	89395421	1007	57601											
MORC1	27136	broad.mit.edu	37	chr3	108710532	108710532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaaccctaacttttcacCtttgctccagttatttccaa	2	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108710532	A	A	108710532	1	1	54	0	1	0	0	0	0	0	0	0	9795	696	24	2		2	MORC1	3	108710532	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	83523	108710532	89311898	1008	57602											
MORC1	27136	broad.mit.edu	37	chr3	108751675	108751675	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccatttaagacaaagatctGacaatcaaaacaaaatgaca	4	8	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108751675	C	C	108751675	1	2	54	0	1	0	0	0	0	0	0	0	9795	1305	45	4		4	MORC1	3	108751675	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41143	108751675	89270755	1009	57603											
MORC1	27136	broad.mit.edu	37	chr3	108818418	108818418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaggatgttctttccaaCactctgttctgctgacccgt	7	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108818418	A	A	108818418	1	1	54	0	1	0	0	0	0	0	0	0	9795	493	17	3		3	MORC1	3	108818418	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	66743	108818418	89204012	1010	57604											
DPPA2	151871	broad.mit.edu	37	chr3	109031277	109031277	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaacacagattaacaaGgtgagatttaagctgggtgt	10	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109031277	C	C	109031277	1	2	54	0	1	0	0	0	0	0	0	0	4774	1015	35	4		4	DPPA2	3	109031277	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	212859	109031277	88991153	1011	57605											
CD96	10225	broad.mit.edu	37	chr3	111266912	111266912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagttttcttcttatgccCctgtgcaatctttaagttta	5	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111266912	A	A	111266912	1	1	54	0	1	0	0	0	0	0	0	0	3078	638	22	2		2	CD96	3	111266912	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2235635	111266912	86755518	1012	57606											
SLC9A10	285335	broad.mit.edu	37	chr3	111888063	111888063	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcataagataagtgttctCtgatttttctggctgtaata	7	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111888063	G	G	111888063	3	3	54	1	0	0	0	0	1	0	0	0	14824	913	32	4	525	4	SLC9A10	3	111888063	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	621151	111888063	86134367	1013	57607											
SLC9A10	285335	broad.mit.edu	37	chr3	111921060	111921060	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgagggcaactgagggctGagtgaactcttttcttagga	14	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111921060	C	C	111921060	1	2	54	0	1	0	0	0	0	0	0	0	14824	1305	45	4		4	SLC9A10	3	111921060	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32997	111921060	86101370	1014	57608											
SLC9A10	285335	broad.mit.edu	37	chr3	111921336	111921336	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaaaatagttaataataaGaaattaagtgccctcaaagg	6	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111921336	C	C	111921336	1	2	54	0	1	0	0	0	0	0	0	0	14824	957	33	4		4	SLC9A10	3	111921336	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	276	111921336	86101094	1015	57609											
SLC9A10	285335	broad.mit.edu	37	chr3	111927182	111927182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatgttcaaattcctcaGtaaatactattgtatggcat	5	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111927182	T	T	111927182	3	4	54	1	0	0	0	0	1	0	0	0	14824	1029	36	3	1760	3	SLC9A10	3	111927182	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5846	111927182	86095248	1016	57610											
CD200	4345	broad.mit.edu	37	chr3	112058298	112058298	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatattttgtaggctgggaGagcaaaatgggactgattga	13	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112058298	T	T	112058298	1	4	54	0	1	0	0	0	0	0	0	0	3010	957	33	3		3	CD200	3	112058298	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	131116	112058298	85964132	1017	57611											
ATG3	64422	broad.mit.edu	37	chr3	112269127	112269127	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctttaaaaacagtgaaaAgcaccaaaatacaaaacata	4	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112269127	G	G	112269127	1	3	54	0	1	0	0	0	0	0	0	0	1099	87	3	5		5	ATG3	3	112269127	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	210829	112269127	85753303	1018	57612											
CCDC80	151887	broad.mit.edu	37	chr3	112346874	112346874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtaatgatttttccaagCttctctgaaataaggaatga	8	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112346874	A	A	112346874	1	1	54	0	1	0	0	0	0	0	0	0	2882	812	28	3		3	CCDC80	3	112346874	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	77747	112346874	85675556	1019	57613											
BOC	91653	broad.mit.edu	37	chr3	112987219	112987219	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacagcagtcattgcctgCcacctgcctgagagccaccc	8	17	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112987219	A	A	112987219	4	1	54	1	0	0	0	0	0	1	0	0	1487	747	26	3	460	3	BOC	3	112987219	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	640345	112987219	85035211	1020	57614											
BOC	91653	broad.mit.edu	37	chr3	112998277	112998277	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccccccatcgcggctgtcCgtggagatcacgggcctaga	12	15	1	2	rs149565679		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112998277	G	G	112998277	2	3	54	1	0	0	0	0	0	0	0	1	1487	639	23	4		4	BOC	3	112998277	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11058	112998277	85024153	1021	57615											
CCDC52	152185	broad.mit.edu	37	chr3	113229207	113229207	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggaggcatcatgctacccTacttcaaactatactacaag	6	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113229207	A	A	113229207	1	1	54	0	1	0	0	0	0	0	0	0	2850	1537	53	5		5	CCDC52	3	113229207	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	230930	113229207	84793223	1022	57616											
SIDT1	54847	broad.mit.edu	37	chr3	113320534	113320534	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaccaggtctgttcatgaaAgtgtttcctaattctgcaga	8	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113320534	C	C	113320534	1	2	54	0	1	0	0	0	0	0	0	0	14415	87	3	5		5	SIDT1	3	113320534	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	91327	113320534	84701896	1023	57617											
KIAA2018	205717	broad.mit.edu	37	chr3	113374495	113374495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtagagagaggaagatgggGaagacttggatcaaagacag	16	3	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113374495	A	A	113374495	3	1	54	1	0	0	0	0	1	0	0	0	8338	1174	41	4	707	4	KIAA2018	3	113374495	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	53961	113374495	84647935	1024	57618											
DRD3	1814	broad.mit.edu	37	chr3	113875066	113875066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtaatcttaaactttgtGctaacctccctaaatctcca	3	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113875066	T	T	113875066	1	4	54	0	1	0	0	0	0	0	0	0	4798	1334	46	3		3	DRD3	3	113875066	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	500571	113875066	84147364	1025	57619											
ZBTB20	26137	broad.mit.edu	37	chr3	114426660	114426660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattccacagatatcatgaCtgatgcacacaatccacctg	6	12	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114426660	A	A	114426660	1	1	54	0	1	0	0	0	0	0	0	0	17655	580	20	3		3	ZBTB20	3	114426660	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	551594	114426660	83595770	1026	57620											
ZBTB20	26137	broad.mit.edu	37	chr3	114637326	114637326	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatgttctggatcacacctGaagccagcatgtttcagagt	10	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114637326	A	A	114637326	1	1	54	0	1	0	0	0	0	0	0	0	17655	1305	45	4		4	ZBTB20	3	114637326	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	210666	114637326	83385104	1027	57621											
LSAMP	4045	broad.mit.edu	37	chr3	115557124	115557124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacctttaaattatcaccCatcaccctttcttcctccat	0	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115557124	A	A	115557124	1	1	54	0	1	0	0	0	0	0	0	0	9135	609	21	2		2	LSAMP	3	115557124	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	919798	115557124	82465306	1028	57622											
LSAMP	4045	broad.mit.edu	37	chr3	115687980	115687980	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcagtgatatgaggataAaaccaggtactgtgattgct	10	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115687980	C	C	115687980	1	2	54	0	1	0	0	0	0	0	0	0	9135	29	1	5		5	LSAMP	3	115687980	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	130856	115687980	82334450	1029	57623											
LSAMP	4045	broad.mit.edu	37	chr3	115743042	115743042	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgggttacttacctgtgCctttcactaaactgtaagac	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115743042	G	G	115743042	1	3	54	0	1	0	0	0	0	0	0	0	9135	754	26	4		4	LSAMP	3	115743042	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	55062	115743042	82279388	1030	57624											
LSAMP	4045	broad.mit.edu	37	chr3	115912592	115912592	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaaatacatctagtatttCccacccttccacccatacta	3	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115912592	A	A	115912592	1	1	54	0	1	0	0	0	0	0	0	0	9135	870	30	3		3	LSAMP	3	115912592	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	169550	115912592	82109838	1031	57625											
LSAMP	4045	broad.mit.edu	37	chr3	116001336	116001336	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcatctccttgtgaaacaCgtagttgtgatatacctttc	7	9	1	2	rs147124610	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116001336	T	T	116001336	1	4	54	0	1	0	0	0	0	0	0	0	9135	551	19	4		4	LSAMP	3	116001336	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	88744	116001336	82021094	1032	57626											
LSAMP	4045	broad.mit.edu	37	chr3	116002719	116002719	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaattagctgggcatggtGacatacacctgtaatcccag	9	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116002719	A	A	116002719	1	1	54	0	1	0	0	0	0	0	0	0	9135	1305	45	4		4	LSAMP	3	116002719	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1383	116002719	82019711	1033	57627											
LSAMP	4045	broad.mit.edu	37	chr3	116007124	116007124	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttctgcccattcacatcTgctgctgcttctgttttcct	5	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116007124	A	A	116007124	1	1	54	0	1	0	0	0	0	0	0	0	9135	1595	55	5		5	LSAMP	3	116007124	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	4405	116007124	82015306	1034	57628											
LSAMP	4045	broad.mit.edu	37	chr3	116163900	116163900	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccacgccgaggtgcggGtccgcggggtgctctggagg	21	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116163900	T	T	116163900	1	4	54	0	1	0	0	0	0	0	0	0	9135	1276	44	3		3	LSAMP	3	116163900	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	156776	116163900	81858530	1035	57629											
ARHGAP31	57514	broad.mit.edu	37	chr3	119051105	119051105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccaggctggagtacaatGgcatgatctcggctcactgc	11	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119051105	T	T	119051105	1	4	54	0	1	0	0	0	0	0	0	0	882	1363	47	2		2	ARHGAP31	3	119051105	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2887205	119051105	78971325	1036	57630											
PLA1A	51365	broad.mit.edu	37	chr3	119343812	119343812	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attatcctcaatttgcacttGaggaaactgaggacctgaga	9	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119343812	T	T	119343812	1	4	54	0	1	0	0	0	0	0	0	0	12083	1305	45	3		3	PLA1A	3	119343812	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	292707	119343812	78678618	1037	57631											
POPDC2	64091	broad.mit.edu	37	chr3	119373496	119373496	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagagatcatgtgggaaaagGaaaatggctctccaagccac	11	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119373496	T	T	119373496	1	4	54	0	1	0	0	0	0	0	0	0	12350	1189	41	3		3	POPDC2	3	119373496	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	29684	119373496	78648934	1038	57632											
C3orf15	89876	broad.mit.edu	37	chr3	119446827	119446827	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgccccagtgaactataagGagctctgtcaataatatcag	8	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119446827	T	T	119446827	1	4	54	0	1	0	0	0	0	0	0	0	2231	1189	41	3		3	C3orf15	3	119446827	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	73331	119446827	78575603	1039	57633											
HGD	3081	broad.mit.edu	37	chr3	120388389	120388389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttacatattttaagttctGcctaaaggtttctccataca	4	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120388389	T	T	120388389	1	4	54	0	1	0	0	0	0	0	0	0	7151	1334	46	3		3	HGD	3	120388389	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	941562	120388389	77634041	1040	57634											
STXBP5L	9515	broad.mit.edu	37	chr3	120889697	120889697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcattttatgaggccagCgtcatcctgataccaaaacc	6	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120889697	A	A	120889697	1	1	54	0	1	0	0	0	0	0	0	0	15475	783	27	3		3	STXBP5L	3	120889697	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	501308	120889697	77132733	1041	57635											
CD86	942	broad.mit.edu	37	chr3	121819382	121819382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagtacagataagcataGgaacataaagaagagataat	8	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121819382	T	T	121819382	1	4	54	0	1	0	0	0	0	0	0	0	3073	1015	35	2		2	CD86	3	121819382	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	929685	121819382	76203048	1042	57636											
SEMA5B	54437	broad.mit.edu	37	chr3	122629027	122629027	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accgttgtccaggtgaggccTcgggccggaagctgtgtttg	16	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122629027	A	A	122629027	3	1	54	1	0	0	0	0	1	0	0	0	14151	1551	54	5	40	5	SEMA5B	3	122629027	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	809645	122629027	75393403	1043	57637											
PDIA5	10954	broad.mit.edu	37	chr3	122868727	122868727	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacgatcatgtagggtcctaGagggggcagaaaggaggggc	18	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122868727	T	T	122868727	1	4	54	0	1	0	0	0	0	0	0	0	11765	957	33	3		3	PDIA5	3	122868727	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	239700	122868727	75153703	1044	57638											
SEC22A	26984	broad.mit.edu	37	chr3	122959691	122959691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacaaaaccctaaatttaGggtttaaactgatagaaaca	5	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122959691	T	T	122959691	1	4	54	0	1	0	0	0	0	0	0	0	14101	1015	35	2		2	SEC22A	3	122959691	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	90964	122959691	75062739	1045	57639											
KALRN	8997	broad.mit.edu	37	chr3	123834414	123834414	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatgggtggagtctttctgCcactgtccgagccctgctgc	13	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123834414	G	G	123834414	1	3	54	0	1	0	0	0	0	0	0	0	8045	754	26	4		4	KALRN	3	123834414	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	874723	123834414	74188016	1046	57640											
KALRN	8997	broad.mit.edu	37	chr3	123938365	123938365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggttgttgtctcaggttaCaggagacctggtcagtttgc	13	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123938365	A	A	123938365	1	1	54	0	1	0	0	0	0	0	0	0	8045	493	17	3		3	KALRN	3	123938365	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	103951	123938365	74084065	1047	57641											
KALRN	8997	broad.mit.edu	37	chr3	123962561	123962561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaccccagaatcctccCctctgggaggtgaaatgcgc	10	13	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123962561	A	A	123962561	1	1	54	0	1	0	0	0	0	0	0	0	8045	638	22	2		2	KALRN	3	123962561	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	24196	123962561	74059869	1048	57642											
KALRN	8997	broad.mit.edu	37	chr3	123978854	123978854	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcatgttccttctctgAatcttacccttcagtgcctt	5	13	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123978854	T	T	123978854	1	4	54	0	1	0	0	0	0	0	0	0	8045	261	9	5		5	KALRN	3	123978854	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	16293	123978854	74043576	1049	57643											
KALRN	8997	broad.mit.edu	37	chr3	124046705	124046705	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taattaagagtctagactttGaggcaagacacatggattct	9	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124046705	C	C	124046705	1	2	54	0	1	0	0	0	0	0	0	0	8045	1305	45	4		4	KALRN	3	124046705	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	67851	124046705	73975725	1050	57644											
KALRN	8997	broad.mit.edu	37	chr3	124197279	124197279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctttctagcctggcactGcctcaacagaaatgatccta	6	13	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124197279	T	T	124197279	1	4	54	0	1	0	0	0	0	0	0	0	8045	1334	46	3		3	KALRN	3	124197279	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	150574	124197279	73825151	1051	57645											
HEG1	57493	broad.mit.edu	37	chr3	124739622	124739622	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccctaatagatcaagtaaaGatggaatacttacttgggga	9	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124739622	C	C	124739622	1	2	54	0	1	0	0	0	0	0	0	0	7111	957	33	4		4	HEG1	3	124739622	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	542343	124739622	73282808	1052	57646											
ALDH1L1	10840	broad.mit.edu	37	chr3	125850393	125850393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacctgaccagggtgaggGgaagcgggaggtgggctcag	19	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125850393	A	A	125850393	1	1	54	0	1	0	0	0	0	0	0	0	494	1247	43	4		4	ALDH1L1	3	125850393	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1110771	125850393	72172037	1053	57647											
KLF15	28999	broad.mit.edu	37	chr3	126062786	126062786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggccctgcctgcccctgCctgccccgaccccacgaagt	9	22	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126062786	A	A	126062786	1	1	54	0	1	0	0	0	0	0	0	0	8414	754	26	3		3	KLF15	3	126062786	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	212393	126062786	71959644	1054	57648											
CHCHD6	84303	broad.mit.edu	37	chr3	126464246	126464246	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacctctcctggagttgttAgcatgctttcataatatgtg	8	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126464246	T	T	126464246	1	4	54	0	1	0	0	0	0	0	0	0	3351	435	15	5		5	CHCHD6	3	126464246	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	401460	126464246	71558184	1055	57649											
CHCHD6	84303	broad.mit.edu	37	chr3	126503588	126503588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatctgacccctcctccccCagtttcacgctttcacatta	3	17	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126503588	T	T	126503588	1	4	54	0	1	0	0	0	0	0	0	0	3351	609	21	4		4	CHCHD6	3	126503588	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	39342	126503588	71518842	1056	57650											
CHCHD6	84303	broad.mit.edu	37	chr3	126598874	126598874	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagaaataagatttctGggaggatgaaggaacagaaa	14	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126598874	C	C	126598874	1	2	54	0	1	0	0	0	0	0	0	0	3351	1363	47	4		4	CHCHD6	3	126598874	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	95286	126598874	71423556	1057	57651											
CHCHD6	84303	broad.mit.edu	37	chr3	126645565	126645565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcgagattcatcctgcaGgcagtggcaagtcataaaaa	9	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126645565	T	T	126645565	1	4	54	0	1	0	0	0	0	0	0	0	3351	1015	35	2		2	CHCHD6	3	126645565	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46691	126645565	71376865	1058	57652											
PLXNA1	5361	broad.mit.edu	37	chr3	126708091	126708091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccgacatgttcggcttcGtgtaccaggatgagtttgtg	13	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126708091	T	T	126708091	3	4	54	1	0	0	0	0	1	0	0	0	12214	1145	40	3	657	3	PLXNA1	3	126708091	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	62526	126708091	71314339	1059	57653											
PLXNA1	5361	broad.mit.edu	37	chr3	126733989	126733989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatgtggcccgagggggaCtttcctgagagtttcagcaa	13	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126733989	T	T	126733989	1	4	54	0	1	0	0	0	0	0	0	0	12214	580	20	4		4	PLXNA1	3	126733989	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25898	126733989	71288441	1060	57654											
ABTB1	80325	broad.mit.edu	37	chr3	127393268	127393268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgagacgtggaggtgaatGtgcgggacaagtgggacagc	19	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127393268	T	T	127393268	3	4	54	1	0	0	0	0	1	0	0	0	102	1377	48	3	97	3	ABTB1	3	127393268	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	659279	127393268	70629162	1061	57655											
ABTB1	80325	broad.mit.edu	37	chr3	127398779	127398779	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttggctgttgtgccctggGagcccttggtgacctcgggg	16	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127398779	T	T	127398779	1	4	54	0	1	0	0	0	0	0	0	0	102	1189	41	3		3	ABTB1	3	127398779	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5511	127398779	70623651	1062	57656											
EEFSEC	60678	broad.mit.edu	37	chr3	127934664	127934664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagattgcagagctgccatcCattctgcttgctttctgcca	9	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127934664	A	A	127934664	1	1	54	0	1	0	0	0	0	0	0	0	4971	609	21	2		2	EEFSEC	3	127934664	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	535885	127934664	70087766	1063	57657											
GATA2	2624	broad.mit.edu	37	chr3	128200720	128200720	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagggtccccgttggcgtttCggcgccataaggtggtggtt	16	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128200720	T	T	128200720	3	4	54	1	0	0	0	0	1	0	0	0	6316	884	31	4	365	4	GATA2	3	128200720	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	266056	128200720	69821710	1064	57658											
ACAD9	28976	broad.mit.edu	37	chr3	128598334	128598334	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcggcgcgggccagccaGgtgcacgtgactaaggcctt	16	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128598334	A	A	128598334	1	1	54	0	1	0	0	0	0	0	0	0	111	1014	35	4		4	ACAD9	3	128598334	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	397614	128598334	69424096	1065	57659											
IFT122	55764	broad.mit.edu	37	chr3	129200819	129200819	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttcttaagcgtttaccatGaacaagaaatggggcaatga	9	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129200819	A	A	129200819	1	1	54	0	1	0	0	0	0	0	0	0	7625	1305	45	4		4	IFT122	3	129200819	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	602485	129200819	68821611	1066	57660											
TMCC1	23023	broad.mit.edu	37	chr3	129389737	129389737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagacatcctttggctgcCgggggatcccattctgctct	11	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129389737	A	A	129389737	3	1	54	1	0	0	0	0	1	0	0	0	16115	652	23	1	1026	1	TMCC1	3	129389737	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	188918	129389737	68632693	1067	57661											
COL6A6	131873	broad.mit.edu	37	chr3	130318619	130318619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcagaagaggctggccaGgcccccccgggacaccaggc	16	15	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130318619	T	T	130318619	3	4	54	1	0	0	0	0	1	0	0	0	3735	1000	35	2	4692	2	COL6A6	3	130318619	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	928882	130318619	67703811	1068	57662											
NEK11	79858	broad.mit.edu	37	chr3	130889805	130889805	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggccgactttgcagtgGgtctgtctggcctctgggag	16	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130889805	C	C	130889805	1	2	54	0	1	0	0	0	0	0	0	0	10418	1247	43	4		4	NEK11	3	130889805	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	571186	130889805	67132625	1069	57663											
CPNE4	131034	broad.mit.edu	37	chr3	131562014	131562014	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaaacaagtcttatccCtattactcctatctctatac	2	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131562014	T	T	131562014	1	4	54	0	1	0	0	0	0	0	0	0	3846	696	24	4		4	CPNE4	3	131562014	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	672209	131562014	66460416	1070	57664											
CPNE4	131034	broad.mit.edu	37	chr3	131714020	131714020	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattttatctgttctcaaatCagaattcacacacacaaaca	2	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131714020	A	A	131714020	1	1	54	0	1	0	0	0	0	0	0	0	3846	841	29	3		3	CPNE4	3	131714020	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	152006	131714020	66308410	1071	57665											
TMEM108	66000	broad.mit.edu	37	chr3	132953390	132953390	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcctttaacaaaattcAacaacgcttcatgctaaaaa	4	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132953390	T	T	132953390	1	4	54	0	1	0	0	0	0	0	0	0	16147	145	5	5		5	TMEM108	3	132953390	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1239370	132953390	65069040	1072	57666											
TMEM108	66000	broad.mit.edu	37	chr3	133004877	133004877	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacacacatgaagactttcAcaactacctcatcattccct	3	15	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133004877	C	C	133004877	1	2	54	0	1	0	0	0	0	0	0	0	16147	174	6	5		5	TMEM108	3	133004877	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	51487	133004877	65017553	1073	57667											
TF	7018	broad.mit.edu	37	chr3	133452174	133452174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctatttcacagtttggGgcacaaaactcgtgtgtccc	9	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133452174	T	T	133452174	1	4	54	0	1	0	0	0	0	0	0	0	15908	1247	43	2		2	TF	3	133452174	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	447297	133452174	64570256	1074	57668											
RAB6B	51560	broad.mit.edu	37	chr3	133558307	133558307	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtccaggagcagttacagagGagtggagggtggcaccctgc	17	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133558307	C	C	133558307	1	2	54	0	1	0	0	0	0	0	0	0	13060	1189	41	4		4	RAB6B	3	133558307	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	106133	133558307	64464123	1075	57669											
SLCO2A1	6578	broad.mit.edu	37	chr3	133740285	133740285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaaggtaacctgtaagcCagggaatgcagaccagttcc	11	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133740285	A	A	133740285	1	1	54	0	1	0	0	0	0	0	0	0	14840	609	21	2		2	SLCO2A1	3	133740285	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	181978	133740285	64282145	1076	57670											
KY	339855	broad.mit.edu	37	chr3	134338144	134338144	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggatcatgaagagcttgagCctgggaggcgagaagactcc	16	8	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134338144	G	G	134338144	1	3	54	0	1	0	0	0	0	0	0	0	8658	754	26	4		4	KY	3	134338144	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	597859	134338144	63684286	1077	57671											
EPHB1	2047	broad.mit.edu	37	chr3	134594412	134594412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacattaatggtgccatGgtcgcaggcaagttcctcag	10	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134594412	T	T	134594412	1	4	54	0	1	0	0	0	0	0	0	0	5216	1363	47	2		2	EPHB1	3	134594412	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	256268	134594412	63428018	1078	57672											
EPHB1	2047	broad.mit.edu	37	chr3	134638791	134638791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaacagccaggggctgGggaaaagaaggaggaagttc	15	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134638791	T	T	134638791	1	4	54	0	1	0	0	0	0	0	0	0	5216	1247	43	2		2	EPHB1	3	134638791	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	44379	134638791	63383639	1079	57673											
EPHB1	2047	broad.mit.edu	37	chr3	134804669	134804669	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgcttctcttcccccaggGagtgctgtgggtttgaaatg	12	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134804669	T	T	134804669	1	4	54	0	1	0	0	0	0	0	0	0	5216	1189	41	3		3	EPHB1	3	134804669	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	165878	134804669	63217761	1080	57674											
EPHB1	2047	broad.mit.edu	37	chr3	134807933	134807933	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtaactgaagctggtactCctttctccaggaagttatgt	9	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134807933	A	A	134807933	1	1	54	0	1	0	0	0	0	0	0	0	5216	870	30	3		3	EPHB1	3	134807933	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3264	134807933	63214497	1081	57675											
EPHB1	2047	broad.mit.edu	37	chr3	134890320	134890320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcttatcgagtgtgtaggTaacatttggagagcataact	11	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134890320	C	C	134890320	1	2	54	0	1	0	0	0	0	0	0	0	5216	1653	57	5		5	EPHB1	3	134890320	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	82387	134890320	63132110	1082	57676											
EPHB1	2047	broad.mit.edu	37	chr3	134911538	134911538	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcgggactttctgagtgAggcgagcatcatgggccagt	16	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134911538	C	C	134911538	3	2	54	1	0	0	0	0	1	0	0	0	5216	304	11	5	2045	5	EPHB1	3	134911538	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	21218	134911538	63110892	1083	57677											
CEP70	80321	broad.mit.edu	37	chr3	138291770	138291770	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaggggctaccggaaacatAgttacttttgtagaatcaaa	9	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138291770	C	C	138291770	1	2	54	0	1	0	0	0	0	0	0	0	3289	435	15	5		5	CEP70	3	138291770	5'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3380232	138291770	59730660	1084	57678											
FAIM	55179	broad.mit.edu	37	chr3	138340324	138340324	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaagtgacggagtccacaaGatcgaatttgaacatgggac	11	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138340324	C	C	138340324	3	2	54	1	0	0	0	0	1	0	0	0	5421	933	33	4	210	4	FAIM	3	138340324	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	48554	138340324	59682106	1085	57679											
CLSTN2	64084	broad.mit.edu	37	chr3	139697828	139697828	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctatagaactttgatgaCaaataattattcattttttt	4	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139697828	T	T	139697828	1	4	54	0	1	0	0	0	0	0	0	0	3594	493	17	4		4	CLSTN2	3	139697828	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1357504	139697828	58324602	1086	57680											
CLSTN2	64084	broad.mit.edu	37	chr3	139753713	139753713	+	Intron	DEL	T	-	-													gtgactaaaaagcatactacTtatgcaaaccccagattgca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139753713	-	-	139753713	6	5	54	0	1	1	0	1	0	0	0	0	3594	1624	56	0		0	CLSTN2	3	139753713	Intron	DEL	T	TCGA-17-Z022-01A-01W-0746-08	55885	139753713	58268717	1087	57681											
CLSTN2	64084	broad.mit.edu	37	chr3	139862768	139862768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtagatactaaacactGttaaggcaaatgatatcatg	7	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139862768	T	T	139862768	1	4	54	0	1	0	0	0	0	0	0	0	3594	1392	48	3		3	CLSTN2	3	139862768	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	109055	139862768	58159662	1088	57682											
CLSTN2	64084	broad.mit.edu	37	chr3	139924450	139924450	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgggtacagttgttgtttgGacctgacccgccccccaccc	10	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139924450	C	C	139924450	1	2	54	0	1	0	0	0	0	0	0	0	3594	1189	41	4		4	CLSTN2	3	139924450	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	61682	139924450	58097980	1089	57683											
CLSTN2	64084	broad.mit.edu	37	chr3	140122211	140122211	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaggaaagcagtgctgcTcatacattagtgagcacaca	10	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140122211	C	C	140122211	1	2	54	0	1	0	0	0	0	0	0	0	3594	1566	54	5		5	CLSTN2	3	140122211	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	197761	140122211	57900219	1090	57684											
CLSTN2	64084	broad.mit.edu	37	chr3	140122651	140122652	+	Frame_Shift_Ins	INS	-	C	C													gggccccacgagacagcctgINSgaaaaagtcacacaagtgag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140122652	C	C	140122651	7	5	54	1	0	1	1	0	0	0	0	0	3594	1357	47	0	423	0	CLSTN2	3	140122651	Frame_Shift_Ins	INS	-	TCGA-17-Z022-01A-01W-0746-08	440	140122651	57899779	1091	57685											
CLSTN2	64084	broad.mit.edu	37	chr3	140165547	140165547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttcctgaccttacaaagCcaagccaagattgttgctgc	7	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140165547	A	A	140165547	1	1	54	0	1	0	0	0	0	0	0	0	3594	754	26	3		3	CLSTN2	3	140165547	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42896	140165547	57856883	1092	57686											
TRIM42	287015	broad.mit.edu	37	chr3	140407130	140407130	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagcacatataccagcgaAgctcctccatgttgtccttc	6	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140407130	C	C	140407130	3	2	54	1	0	0	0	0	1	0	0	0	16641	72	3	5	1616	5	TRIM42	3	140407130	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	241583	140407130	57615300	1093	57687											
TFDP2	7029	broad.mit.edu	37	chr3	141712394	141712395	+	Frame_Shift_Del	DEL	AG	-	-													actcacctttctgaaaaatcAgagtctataaattttctagc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141712395	-	-	141712394	7	5	54	1	0	1	0	1	0	0	0	0	15921	175	7	0	1033	0	TFDP2	3	141712394	Frame_Shift_Del	DEL	AG	TCGA-17-Z022-01A-01W-0746-08	1305264	141712394	56310036	1094	57688											
TFDP2	7029	broad.mit.edu	37	chr3	141724189	141724189	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaccgcgcctggtttaacTggaatatctgatcaaatata	7	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141724189	A	A	141724189	1	1	54	0	1	0	0	0	0	0	0	0	15921	1595	55	5		5	TFDP2	3	141724189	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	11795	141724189	56298241	1095	57689											
ATR	545	broad.mit.edu	37	chr3	142168294	142168294	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catatatggagtccaaccaaGatacatctggcatagtaagt	8	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142168294	A	A	142168294	3	1	54	1	0	0	0	0	1	0	0	0	1208	942	33	4	26	4	ATR	3	142168294	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	444105	142168294	55854136	1096	57690											
ATR	545	broad.mit.edu	37	chr3	142170243	142170243	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggtattgtaaacagagatCtgaagcctagaaatattttt	9	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142170243	A	A	142170243	1	1	54	0	1	0	0	0	0	0	0	0	1208	928	32	3		3	ATR	3	142170243	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1949	142170243	55852187	1097	57691											
PCOLCE2	26577	broad.mit.edu	37	chr3	142537011	142537011	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaagaacttccctcagcTatctcggaggcctcatacct	8	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142537011	A	A	142537011	1	1	54	0	1	0	0	0	0	0	0	0	11689	1537	53	5		5	PCOLCE2	3	142537011	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	366768	142537011	55485419	1098	57692											
PCOLCE2	26577	broad.mit.edu	37	chr3	142539667	142539667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttccctagaccaaccatGgcatggaaaatccatggctt	7	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142539667	T	T	142539667	1	4	54	0	1	0	0	0	0	0	0	0	11689	1363	47	2		2	PCOLCE2	3	142539667	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2656	142539667	55482763	1099	57693											
PCOLCE2	26577	broad.mit.edu	37	chr3	142567202	142567202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacagaagcggccaatgCgctggccattggcatggcca	13	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142567202	A	A	142567202	3	1	54	1	0	0	0	0	1	0	0	0	11689	768	27	3	970	3	PCOLCE2	3	142567202	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	27535	142567202	55455228	1100	57694											
SLC9A9	285195	broad.mit.edu	37	chr3	143001212	143001212	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatactttacagacttttatCtttgcatgttttgttcctat	4	7	1	1	rs77440652	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143001212	T	T	143001212	1	4	54	0	1	0	0	0	0	0	0	0	14835	928	32	4		4	SLC9A9	3	143001212	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	434010	143001212	55021218	1101	57695											
SLC9A9	285195	broad.mit.edu	37	chr3	143031321	143031321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgacatacgccagagcagtGggcatggcccttccaagtgg	13	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143031321	A	A	143031321	1	1	54	0	1	0	0	0	0	0	0	0	14835	1363	47	4		4	SLC9A9	3	143031321	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	30109	143031321	54991109	1102	57696											
SLC9A9	285195	broad.mit.edu	37	chr3	143066245	143066245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaatcaagaagataaccCaaaggaaacagataaatgga	10	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143066245	A	A	143066245	1	1	54	0	1	0	0	0	0	0	0	0	14835	609	21	2		2	SLC9A9	3	143066245	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	34924	143066245	54956185	1103	57697											
SLC9A9	285195	broad.mit.edu	37	chr3	143090312	143090312	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actccattcaatgtaatattCataagacatagcatatcata	3	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143090312	A	A	143090312	1	1	54	0	1	0	0	0	0	0	0	0	14835	841	29	3		3	SLC9A9	3	143090312	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	24067	143090312	54932118	1104	57698											
SLC9A9	285195	broad.mit.edu	37	chr3	143244883	143244883	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttattactctgttttacatCtatgaatatactatgcagta	4	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143244883	T	T	143244883	1	4	54	0	1	0	0	0	0	0	0	0	14835	928	32	4		4	SLC9A9	3	143244883	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	154571	143244883	54777547	1105	57699											
SLC9A9	285195	broad.mit.edu	37	chr3	143251553	143251553	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgggctagtttgagtaatGggatttcttccagccctata	10	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143251553	A	A	143251553	1	1	54	0	1	0	0	0	0	0	0	0	14835	1363	47	4		4	SLC9A9	3	143251553	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6670	143251553	54770877	1106	57700											
SLC9A9	285195	broad.mit.edu	37	chr3	143297289	143297289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgactgagaaccaagatgGcaccagtggtgccgtatgaa	14	8	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143297289	T	T	143297289	1	4	54	0	1	0	0	0	0	0	0	0	14835	1218	42	3		3	SLC9A9	3	143297289	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45736	143297289	54725141	1107	57701											
SLC9A9	285195	broad.mit.edu	37	chr3	143551139	143551139	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attggaaacctatatgatttGgaaccttcagaagtgacagg	10	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143551139	C	C	143551139	1	2	54	0	1	0	0	0	0	0	0	0	14835	1363	47	4		4	SLC9A9	3	143551139	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	253850	143551139	54471291	1108	57702											
PLSCR4	57088	broad.mit.edu	37	chr3	145918866	145918866	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacatgtatgttgtccaacTgttgggataaaacaaagcaa	9	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145918866	A	A	145918866	5	1	54	1	0	0	0	0	0	0	1	0	12207	1594	55	5	656	5	PLSCR4	3	145918866	Splice_Site	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2367727	145918866	52103564	1109	57703											
ZIC4	84107	broad.mit.edu	37	chr3	147113743	147113743	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcgcccgtgtgcacgcggAtgtgatttacaagtttgtat	11	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147113743	T	T	147113743	3	4	54	1	0	0	0	0	1	0	0	0	17807	333	12	5	432	5	ZIC4	3	147113743	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1194877	147113743	50908687	1110	57704											
HLTF	6596	broad.mit.edu	37	chr3	148777616	148777616	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataaaacaacaaagaatcTtaaatttttttcaaattatc	2	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148777616	G	G	148777616	1	3	54	0	1	0	0	0	0	0	0	0	7282	1624	56	5		5	HLTF	3	148777616	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1663873	148777616	49244814	1111	57705											
CLRN1	7401	broad.mit.edu	37	chr3	150661494	150661494	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagagggcagccaccctacAtgatgaagcaaagggcccac	12	13	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150661494	T	T	150661494	1	4	54	0	1	0	0	0	0	0	0	0	3589	232	8	5		5	CLRN1	3	150661494	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1883878	150661494	47360936	1112	57706											
MED12L	116931	broad.mit.edu	37	chr3	150819924	150819924	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcattaactgatttacttGaaggtcttattattaaaagg	8	4	1	2	rs139386238	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150819924	T	T	150819924	1	4	54	0	1	0	0	0	0	0	0	0	9522	1305	45	3		3	MED12L	3	150819924	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	158430	150819924	47202506	1113	57707											
MED12L	116931	broad.mit.edu	37	chr3	150881912	150881912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtcaagcacaggttttaGtatctagatgcttgggtgct	13	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150881912	T	T	150881912	1	4	54	0	1	0	0	0	0	0	0	0	9522	1044	36	3		3	MED12L	3	150881912	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	61988	150881912	47140518	1114	57708											
MED12L	116931	broad.mit.edu	37	chr3	151093991	151093991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaagacagcacattaagCgtattcttcaggtcagtcgt	9	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151093991	A	A	151093991	3	1	54	1	0	0	0	0	1	0	0	0	9522	768	27	3	4039	3	MED12L	3	151093991	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	212079	151093991	46928439	1115	57709											
MED12L	116931	broad.mit.edu	37	chr3	151097983	151097983	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaaagggaaggcctcCtaacatctctccagaatcaa	7	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151097983	G	G	151097983	3	3	54	1	0	0	0	0	1	0	0	0	9522	680	24	4	4574	4	MED12L	3	151097983	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3992	151097983	46924447	1116	57710											
MED12L	116931	broad.mit.edu	37	chr3	151131111	151131111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggagatgagggcaatgCcatcacccttcagacagtgc	13	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151131111	A	A	151131111	1	1	54	0	1	0	0	0	0	0	0	0	9522	754	26	3		3	MED12L	3	151131111	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	33128	151131111	46891319	1117	57711											
IGSF10	285313	broad.mit.edu	37	chr3	151162651	151162651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttaatcccaaaacataaCaatcttcttcttgttttcta	2	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151162651	A	A	151162651	1	1	54	0	1	0	0	0	0	0	0	0	7667	493	17	3		3	IGSF10	3	151162651	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	31540	151162651	46859779	1118	57712											
AADACL2	344752	broad.mit.edu	37	chr3	151452058	151452058	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattaatagtattaatatcaCcattttgaaagaaccattgc	4	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151452058	T	T	151452058	1	4	54	0	1	0	0	0	0	0	0	0	11	522	18	4		4	AADACL2	3	151452058	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	289407	151452058	46570372	1119	57713											
C3orf79	152118	broad.mit.edu	37	chr3	153203855	153203855	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatatgggcaccctgccactCttctaaaagactacattttg	6	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153203855	A	A	153203855	3	1	54	1	0	0	0	0	1	0	0	0	2269	913	32	3	190	3	C3orf79	3	153203855	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1751797	153203855	44818575	1120	57714											
PLCH1	23007	broad.mit.edu	37	chr3	155331602	155331603	+	Intron	INS	-	AA	AA													cctagtcagagcaatcaaacINSgagaaaaaaataaagggcat					rs143945463	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	155331603	AA	AA	155331602	6	5	54	0	1	1	1	0	0	0	0	0	12132	551	19	0		0	PLCH1	3	155331602	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	2127747	155331602	42690828	1121	57715											
RSRC1	51319	broad.mit.edu	37	chr3	158092708	158092708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtagattccatttaagtGtactttttattggctctaag	8	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158092708	T	T	158092708	1	4	54	0	1	0	0	0	0	0	0	0	13825	1392	48	3		3	RSRC1	3	158092708	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2761106	158092708	39929722	1122	57716											
SCHIP1	29970	broad.mit.edu	37	chr3	159164889	159164889	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgacaattatgtactgactCcaactaaacacaagagacct	5	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159164889	A	A	159164889	1	1	54	0	1	0	0	0	0	0	0	0	14017	870	30	3		3	SCHIP1	3	159164889	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1072181	159164889	38857541	1123	57717											
SCHIP1	29970	broad.mit.edu	37	chr3	159289070	159289070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggtttgtcacaaataGctattattttgagatacgtc	9	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159289070	T	T	159289070	1	4	54	0	1	0	0	0	0	0	0	0	14017	986	34	3		3	SCHIP1	3	159289070	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	124181	159289070	38733360	1124	57718											
PPM1L	151742	broad.mit.edu	37	chr3	160560097	160560097	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacagtgagtagatctgtttGgctctaatagaggactcatg	11	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160560097	C	C	160560097	1	2	54	0	1	0	0	0	0	0	0	0	12445	1363	47	4		4	PPM1L	3	160560097	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1271027	160560097	37462333	1125	57719											
PPM1L	151742	broad.mit.edu	37	chr3	160598627	160598627	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttccacccctctccaccCagattttgccaccagttatt	3	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160598627	T	T	160598627	1	4	54	0	1	0	0	0	0	0	0	0	12445	609	21	4		4	PPM1L	3	160598627	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	38530	160598627	37423803	1126	57720											
PPM1L	151742	broad.mit.edu	37	chr3	160631260	160631260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtgagttttgataaatGtatatagctgtataaatacc	7	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160631260	T	T	160631260	1	4	54	0	1	0	0	0	0	0	0	0	12445	1392	48	3		3	PPM1L	3	160631260	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32633	160631260	37391170	1127	57721											
PPM1L	151742	broad.mit.edu	37	chr3	160714061	160714061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagctaccattcgatccaGcaatcccactactgggtatc	7	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160714061	T	T	160714061	1	4	54	0	1	0	0	0	0	0	0	0	12445	986	34	3		3	PPM1L	3	160714061	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	82801	160714061	37308369	1128	57722											
PPM1L	151742	broad.mit.edu	37	chr3	160747068	160747068	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagccagacttagtgaAcaaatgaagttgagttttac	10	5	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160747068	G	G	160747068	1	3	54	0	1	0	0	0	0	0	0	0	12445	58	2	5		5	PPM1L	3	160747068	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	33007	160747068	37275362	1129	57723											
PPM1L	151742	broad.mit.edu	37	chr3	160786769	160786769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgatcttggcatcagatGgtctctgggatgctttcagc	11	9	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160786769	T	T	160786769	3	4	54	1	0	0	0	0	1	0	0	0	12445	1348	47	2	921	2	PPM1L	3	160786769	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	39701	160786769	37235661	1130	57724											
C3orf57	165679	broad.mit.edu	37	chr3	161065912	161065912	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaagtgggaggaaaggacaTggaaaaatgctaaggcatgg	15	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161065912	C	C	161065912	1	2	54	0	1	0	0	0	0	0	0	0	2257	1479	51	5		5	C3orf57	3	161065912	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	279143	161065912	36956518	1131	57725											
SI	6476	broad.mit.edu	37	chr3	164709182	164709182	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcttgacatggtaggatGtgaccaccacggacatgtag	13	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164709182	A	A	164709182	2	1	54	1	0	0	0	0	0	0	0	1	14410	1368	48	4		4	SI	3	164709182	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3643270	164709182	33313248	1132	57726											
SI	6476	broad.mit.edu	37	chr3	164712060	164712060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttactcatgcaaaaggggtCggataacagtgccaccatta	9	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164712060	A	A	164712060	3	1	54	1	0	0	0	0	1	0	0	0	14410	884	31	3	689	3	SI	3	164712060	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2878	164712060	33310370	1133	57727											
SI	6476	broad.mit.edu	37	chr3	164758956	164758956	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagtagaagcattttaatCtgctttttaaagcaactaca	5	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164758956	A	A	164758956	1	1	54	0	1	0	0	0	0	0	0	0	14410	928	32	3		3	SI	3	164758956	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	46896	164758956	33263474	1134	57728											
ZBBX	79740	broad.mit.edu	37	chr3	167048600	167048600	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaagaagaagaagaaggagGaggagaagcagaagcagaag	17	2	0	8			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167048600	T	T	167048600	1	4	54	0	1	0	0	0	0	0	0	0	17643	1189	41	3		3	ZBBX	3	167048600	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2289644	167048600	30973830	1135	57729											
WDR49	151790	broad.mit.edu	37	chr3	167259784	167259784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacaccactgcactccacCctgggcaacagagtgtgacc	8	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167259784	A	A	167259784	1	1	54	0	1	0	0	0	0	0	0	0	17429	638	22	2		2	WDR49	3	167259784	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	211184	167259784	30762646	1136	57730											
WDR49	151790	broad.mit.edu	37	chr3	167322121	167322121	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgagagtgataatcaaaaGcatgaatgccctgggcaatg	12	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167322121	C	C	167322121	3	2	54	1	0	0	0	0	1	0	0	0	17429	971	34	4	2078	4	WDR49	3	167322121	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	62337	167322121	30700309	1137	57731											
GOLIM4	27333	broad.mit.edu	37	chr3	167728496	167728496	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgcacacccacaaacactCaagtgctcaatagaaatatg	5	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167728496	T	T	167728496	1	4	54	0	1	0	0	0	0	0	0	0	6630	841	29	4		4	GOLIM4	3	167728496	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	406375	167728496	30293934	1138	57732											
MECOM	2122	broad.mit.edu	37	chr3	169304454	169304454	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcctttgtaacatcccctaGgaatatataatttcaattta	4	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169304454	C	C	169304454	1	2	54	0	1	0	0	0	0	0	0	0	9515	1015	35	4		4	MECOM	3	169304454	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1575958	169304454	28717976	1139	57733											
LRRIQ4	344657	broad.mit.edu	37	chr3	169540006	169540006	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcagcctggagagcctGgacctgagctacaaccccat	11	14	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169540006	A	A	169540006	2	1	54	1	0	0	0	0	0	0	0	1	9118	1335	47	4		4	LRRIQ4	3	169540006	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	235552	169540006	28482424	1140	57734											
PRKCI	5584	broad.mit.edu	37	chr3	169953299	169953299	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtatttaaaagaatactgaaGagcacaatcttttttttgcc	6	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169953299	T	T	169953299	1	4	54	0	1	0	0	0	0	0	0	0	12620	957	33	3		3	PRKCI	3	169953299	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	413293	169953299	28069131	1141	57735											
PRKCI	5584	broad.mit.edu	37	chr3	170002268	170002268	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattttactctgcagaaatcAgtctagcattaaattatctt	5	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170002268	T	T	170002268	3	4	54	1	0	0	0	0	1	0	0	0	12620	188	7	5	1133	5	PRKCI	3	170002268	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	48969	170002268	28020162	1142	57736											
SLC7A14	57709	broad.mit.edu	37	chr3	170198536	170198536	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggtcatgtccacggtgCcgtaattggggtggttgacg	16	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170198536	T	T	170198536	3	4	54	1	0	0	0	0	1	0	0	0	14810	739	26	4	788	4	SLC7A14	3	170198536	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	196268	170198536	27823894	1143	57737											
TNIK	23043	broad.mit.edu	37	chr3	170828673	170828673	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagatcagggttgctgtgtGagtgacagagcacactggtt	16	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170828673	T	T	170828673	1	4	54	0	1	0	0	0	0	0	0	0	16436	1305	45	3		3	TNIK	3	170828673	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	630137	170828673	27193757	1144	57738											
TNIK	23043	broad.mit.edu	37	chr3	171126785	171126785	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatactgctaactataaaGcatagttcagcccccttcag	6	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171126785	A	A	171126785	1	1	54	0	1	0	0	0	0	0	0	0	16436	986	34	4		4	TNIK	3	171126785	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	298112	171126785	26895645	1145	57739											
ECT2	1894	broad.mit.edu	37	chr3	172480315	172480315	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgaagagaaaaccaatatgGaagaaatgactgaaatgcaa	9	4	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172480315	C	C	172480315	3	2	54	1	0	0	0	0	1	0	0	0	4941	1175	41	4	801	4	ECT2	3	172480315	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1353530	172480315	25542115	1146	57740											
SPATA16	83893	broad.mit.edu	37	chr3	172714606	172714606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcatccctccctccttcCtaagccctggcaaccagtga	5	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172714606	A	A	172714606	1	1	54	0	1	0	0	0	0	0	0	0	15117	696	24	2		2	SPATA16	3	172714606	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	234291	172714606	25307824	1147	57741											
NLGN1	22871	broad.mit.edu	37	chr3	173280774	173280774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaaactcccctacccaCacacatacacacaaaaacca	0	19	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173280774	A	A	173280774	1	1	54	0	1	0	0	0	0	0	0	0	10556	493	17	3		3	NLGN1	3	173280774	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	566168	173280774	24741656	1148	57742											
NLGN1	22871	broad.mit.edu	37	chr3	173399090	173399090	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcagtgtttggatgtgaaaGaggaatagaagattgatgtt	14	1	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173399090	C	C	173399090	1	2	54	0	1	0	0	0	0	0	0	0	10556	957	33	4		4	NLGN1	3	173399090	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	118316	173399090	24623340	1149	57743											
KCNMB2	10242	broad.mit.edu	37	chr3	178384707	178384708	+	Intron	DNP	CC	AA	AA													actcttcagatgttcaagttCcttacataaaatgatgtagt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	178384708	AA	AA	178384707	1	1	54	0	1	0	0	0	0	0	0	0	8145	870	30	3		3	KCNMB2	3	178384707	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	4985617	178384707	19637723	1150	57744											
KCNMB2	10242	broad.mit.edu	37	chr3	178386965	178386965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgggctcataggaaacaCctctcaaacataagtgaaga	8	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178386965	A	A	178386965	1	1	54	0	1	0	0	0	0	0	0	0	8145	522	18	3		3	KCNMB2	3	178386965	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2258	178386965	19635465	1151	57745											
KCNMB2	10242	broad.mit.edu	37	chr3	178388810	178388810	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggttctagaatagaaagaAgtttcagattcaatctgatt	8	5	4	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178388810	T	T	178388810	1	4	54	0	1	0	0	0	0	0	0	0	8145	87	3	5		5	KCNMB2	3	178388810	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1845	178388810	19633620	1152	57746											
KCNMB3	27094	broad.mit.edu	37	chr3	178976721	178976721	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgcatctctatgaatttaGaacattctacttacattggc	6	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178976721	A	A	178976721	1	1	54	0	1	0	0	0	0	0	0	0	8146	957	33	4		4	KCNMB3	3	178976721	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	587911	178976721	19045709	1153	57747											
USP13	8975	broad.mit.edu	37	chr3	179399445	179399445	+	Intron	DEL	G	-	-													cttaagggaggggggtgaaaGggggctgcaagtgaagaaac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179399445	-	-	179399445	6	5	54	0	1	1	0	1	0	0	0	0	17170	1015	35	0		0	USP13	3	179399445	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	422724	179399445	18622985	1154	57748											
USP13	8975	broad.mit.edu	37	chr3	179499619	179499619	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggaaggaaggtgagtcAtttttagaaggtaaatgtta	12	1	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179499619	T	T	179499619	1	4	54	0	1	0	0	0	0	0	0	0	17170	232	8	5		5	USP13	3	179499619	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	100174	179499619	18522811	1155	57749											
PEX5L	51555	broad.mit.edu	37	chr3	179561109	179561109	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaccaggacccaactaaatCacaatctctggggatgggac	9	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179561109	A	A	179561109	1	1	54	0	1	0	0	0	0	0	0	0	11844	841	29	3		3	PEX5L	3	179561109	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	61490	179561109	18461321	1156	57750											
PEX5L	51555	broad.mit.edu	37	chr3	179657907	179657907	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgggtactagtcagtgcaGgtgacctgattatgcttcct	12	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179657907	C	C	179657907	1	2	54	0	1	0	0	0	0	0	0	0	11844	1015	35	4		4	PEX5L	3	179657907	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96798	179657907	18364523	1157	57751											
CCDC39	339829	broad.mit.edu	37	chr3	180397269	180397269	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctgcacagtgccgcgGcaattgccgggggagcccta	15	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180397269	T	T	180397269	1	4	54	0	1	0	0	0	0	0	0	0	2838	1218	42	3		3	CCDC39	3	180397269	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	739362	180397269	17625161	1158	57752											
MCCC1	56922	broad.mit.edu	37	chr3	182769856	182769856	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaaaacagcttgaaagCaactgatttaaaagttgtgt	9	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182769856	T	T	182769856	1	4	54	0	1	0	0	0	0	0	0	0	9467	725	25	4		4	MCCC1	3	182769856	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2372587	182769856	15252574	1159	57753											
MCF2L2	23101	broad.mit.edu	37	chr3	182948805	182948805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagtcacgtataatgcgCctgaatcacagcagcaggtg	11	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182948805	A	A	182948805	3	1	54	1	0	0	0	0	1	0	0	0	9473	753	26	3	1541	3	MCF2L2	3	182948805	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	178949	182948805	15073625	1160	57754											
ABCC5	10057	broad.mit.edu	37	chr3	183665123	183665123	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagactgacctggacagcatAagagatggcgagacccgcat	13	10	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183665123	G	G	183665123	3	3	54	1	0	0	0	0	1	0	0	0	56	362	13	5	942	5	ABCC5	3	183665123	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	716318	183665123	14357307	1161	57755											
ECE2	9718	broad.mit.edu	37	chr3	183996160	183996160	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actttgctgagcccagacttCcctctcctgtgacaggcagg	10	14	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183996160	G	G	183996160	1	3	54	0	1	0	0	0	0	0	0	0	4930	870	30	4		4	ECE2	3	183996160	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	331037	183996160	14026270	1162	57756											
EIF4G1	1981	broad.mit.edu	37	chr3	184035686	184035686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttctaaagcagaagacCcttcccaggcttggcttctg	9	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184035686	A	A	184035686	1	1	54	0	1	0	0	0	0	0	0	0	5078	638	22	2		2	EIF4G1	3	184035686	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	39526	184035686	13986744	1163	57757											
C3orf70	285382	broad.mit.edu	37	chr3	184866097	184866097	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagcttaaatcctacagatCcaaaactagattcatgacct	5	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184866097	A	A	184866097	1	1	54	0	1	0	0	0	0	0	0	0	2264	870	30	3		3	C3orf70	3	184866097	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	830411	184866097	13156333	1164	57758											
MAP3K13	9175	broad.mit.edu	37	chr3	185047086	185047086	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttctaagcagtgcttagaTttatcctcatgttctttcca	6	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185047086	C	C	185047086	1	2	54	0	1	0	0	0	0	0	0	0	9339	1508	52	5		5	MAP3K13	3	185047086	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	180989	185047086	12975344	1165	57759											
IGF2BP2	10644	broad.mit.edu	37	chr3	185404893	185404893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttcaagaatcatgcggCatgcttcagaagtcccctct	8	11	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185404893	A	A	185404893	3	1	54	1	0	0	0	0	1	0	0	0	7644	710	25	3	1075	3	IGF2BP2	3	185404893	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	357807	185404893	12617537	1166	57760											
MASP1	5648	broad.mit.edu	37	chr3	186947812	186947812	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccaccattaattgacCttcctgataatagcatccca	3	15	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186947812	T	T	186947812	1	4	54	0	1	0	0	0	0	0	0	0	9414	696	24	4		4	MASP1	3	186947812	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1542919	186947812	11074618	1167	57761											
MASP1	5648	broad.mit.edu	37	chr3	186990521	186990521	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaggatccccctctggAgccctcagaaggagcatggt	13	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186990521	T	T	186990521	1	4	54	0	1	0	0	0	0	0	0	0	9414	319	11	5		5	MASP1	3	186990521	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	42709	186990521	11031909	1168	57762											
MASP1	5648	broad.mit.edu	37	chr3	187003888	187003888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacatttataaacacagGcccctgccattcatctcaat	3	13	2	0	rs2287365	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187003888	T	T	187003888	1	4	54	0	1	0	0	0	0	0	0	0	9414	1218	42	3		3	MASP1	3	187003888	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13367	187003888	11018542	1169	57763											
LPP	4026	broad.mit.edu	37	chr3	187998453	187998453	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgtagacaggtgatttgtGagtctttgaaaggaagtagt	13	2	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187998453	T	T	187998453	1	4	54	0	1	0	0	0	0	0	0	0	9010	1305	45	3		3	LPP	3	187998453	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	994565	187998453	10023977	1170	57764											
TPRG1	285386	broad.mit.edu	37	chr3	188954195	188954195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcaatctatttagggaaGtttatgtagatatctgataa	9	3	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188954195	T	T	188954195	1	4	54	0	1	0	0	0	0	0	0	0	16542	1044	36	3		3	TPRG1	3	188954195	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	955742	188954195	9068235	1171	57765											
TP63	8626	broad.mit.edu	37	chr3	189585695	189585695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggagggatgaaccgccGtccaattttaatcattgtta	10	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189585695	T	T	189585695	3	4	54	1	0	0	0	0	1	0	0	0	16516	1145	40	3	1028	3	TP63	3	189585695	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	631500	189585695	8436735	1172	57766											
IL1RAP	3556	broad.mit.edu	37	chr3	190251173	190251173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcaaaatgacatttaaaGgcctttccggccttgagatt	8	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190251173	T	T	190251173	1	4	54	0	1	0	0	0	0	0	0	0	7730	1015	35	2		2	IL1RAP	3	190251173	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	665478	190251173	7771257	1173	57767											
FGF12	2257	broad.mit.edu	37	chr3	192053158	192053158	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatgtacttactgaactgtAgagatagccttcaccattca	6	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192053158	G	G	192053158	3	3	54	1	0	0	0	0	1	0	0	0	5898	420	15	5	337	5	FGF12	3	192053158	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1801985	192053158	5969272	1174	57768											
HES1	3280	broad.mit.edu	37	chr3	193854616	193854616	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctggtactgcgttctccCaggcgggagggcccggcctt	15	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193854616	A	A	193854616	1	1	54	0	1	0	0	0	0	0	0	0	7132	609	21	2		2	HES1	3	193854616	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1801458	193854616	4167814	1175	57769											
LSG1	55341	broad.mit.edu	37	chr3	194383239	194383239	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggctcatgcctgtaacCccagcactttgggaggctga	12	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	194383239	G	G	194383239	1	3	54	0	1	0	0	0	0	0	0	0	9136	638	22	4		4	LSG1	3	194383239	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	528623	194383239	3639191	1176	57770											
ACAP2	23527	broad.mit.edu	37	chr3	195070550	195070550	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaaatttgccatgaaggaGatgggaattctagatgtgcg	13	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195070550	A	A	195070550	1	1	54	0	1	0	0	0	0	0	0	0	119	957	33	4		4	ACAP2	3	195070550	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	687311	195070550	2951880	1177	57771											
MUC20	200958	broad.mit.edu	37	chr3	195453534	195453534	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtggagaggagggaaggaTctggagcctactcagagcct	17	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195453534	A	A	195453534	1	1	54	0	1	0	0	0	0	0	0	0	10070	1450	50	5		5	MUC20	3	195453534	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	382984	195453534	2568896	1178	57772											
SENP5	205564	broad.mit.edu	37	chr3	196613016	196613016	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtgaaggggacgaactctCatgtgcctgattgccacact	12	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196613016	T	T	196613016	3	4	54	1	0	0	0	0	1	0	0	0	14162	826	29	4	966	4	SENP5	3	196613016	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1159482	196613016	1409414	1179	57773											
SENP5	205564	broad.mit.edu	37	chr3	196626786	196626786	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttttgtttcaaaatctttCtctttcagaaaaccatttat	2	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196626786	G	G	196626786	1	3	54	0	1	0	0	0	0	0	0	0	14162	928	32	4		4	SENP5	3	196626786	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13770	196626786	1395644	1180	57774											
DLG1	1739	broad.mit.edu	37	chr3	196771424	196771425	+	3'UTR	DEL	CA	-	-													tcagtactcaagaaagactcCagaggaaagggcaaagagat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196771425	-	-	196771424	6	5	54	0	1	1	0	1	0	0	0	0	4594	609	21	0		0	DLG1	3	196771424	3'UTR	DEL	CA	TCGA-17-Z022-01A-01W-0746-08	144638	196771424	1251006	1181	57775											
KIAA0226	9711	broad.mit.edu	37	chr3	197422649	197422650	+	Intron	INS	-	A	A													ctttactgtaatctatacccINSaaaacctcatcagaacaaat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197422650	A	A	197422649	6	5	54	0	1	1	1	0	0	0	0	0	8232	609	21	0		0	KIAA0226	3	197422649	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	651225	197422649	599781	1182	57776											
ZNF595	152687	broad.mit.edu	37	chr4	64929	64929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcaggcctgcctccagGgccatggctgggtgtgtttc	14	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64929	T	T	64929	1	4	54	0	1	0	0	0	0	0	0	0	18152	1247	43	2		2	ZNF595	4	64929	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		64929	191089347	1183	57777											
ZNF732	654254	broad.mit.edu	37	chr4	284311	284311	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtccctgaagcagccctGtgactcagttctagccatat	10	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	284311	A	A	284311	1	1	54	0	1	0	0	0	0	0	0	0	18252	1392	48	4		4	ZNF732	4	284311	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	219382	284311	190869965	1184	57778											
GAK	2580	broad.mit.edu	37	chr4	859182	859182	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgacggcctctctcttcctGaagggtcctgaggatgcatc	11	13	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	859182	A	A	859182	1	1	54	0	1	0	0	0	0	0	0	0	6257	1305	45	4		4	GAK	4	859182	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	574871	859182	190295094	1185	57779											
GAK	2580	broad.mit.edu	37	chr4	891903	891903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtggcactgccaaagtcaCacagcttaatggtcccttgg	10	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	891903	A	A	891903	3	1	54	1	0	0	0	0	1	0	0	0	6257	478	17	3	3458	3	GAK	4	891903	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	32721	891903	190262373	1186	57780											
RNF4	6047	broad.mit.edu	37	chr4	2515395	2515395	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctttttaatgccttctAgatcgtgcagaatggacgtc	8	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2515395	G	G	2515395	5	3	54	1	0	0	0	0	0	0	1	0	13603	434	15	5	448	5	RNF4	4	2515395	Splice_Site	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1623492	2515395	188638881	1187	57781											
ADRA2C	152	broad.mit.edu	37	chr4	3768696	3768696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctactggtacttcgggcaGgtgtggtgcggcgtgtacct	16	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3768696	T	T	3768696	3	4	54	1	0	0	0	0	1	0	0	0	339	991	35	2	365	2	ADRA2C	4	3768696	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1253301	3768696	187385580	1188	57782											
CYTL1	54360	broad.mit.edu	37	chr4	5016834	5016834	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattaagtctgggtagctgaCataactgtagttctcttggg	11	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5016834	A	A	5016834	1	1	54	0	1	0	0	0	0	0	0	0	4241	493	17	3		3	CYTL1	4	5016834	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1248138	5016834	186137442	1189	57783											
STK32B	55351	broad.mit.edu	37	chr4	5378144	5378144	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctctttctctctctctctCccctgcccccctctctccct	1	24	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5378144	G	G	5378144	1	3	54	0	1	0	0	0	0	0	0	0	15416	870	30	4		4	STK32B	4	5378144	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	361310	5378144	185776132	1190	57784											
EVC	2121	broad.mit.edu	37	chr4	5742738	5742738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatataaaatggtacctacGgccatactggaaaacgtttt	7	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5742738	T	T	5742738	1	4	54	0	1	0	0	0	0	0	0	0	5327	1131	39	1		1	EVC	4	5742738	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	364594	5742738	185411538	1191	57785											
CRMP1	1400	broad.mit.edu	37	chr4	5843112	5843112	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacacagggcagttgatcCggcccgcaatggtgatggcc	14	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5843112	T	T	5843112	3	4	54	1	0	0	0	0	1	0	0	0	3922	652	23	4	1012	4	CRMP1	4	5843112	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	100374	5843112	185311164	1192	57786											
CRMP1	1400	broad.mit.edu	37	chr4	5844826	5844826	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaggagtccttacctcttcAggtctgctcagggcatggcc	12	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5844826	T	T	5844826	2	4	54	1	0	0	0	0	0	0	0	1	3922	175	7	5		5	CRMP1	4	5844826	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1714	5844826	185309450	1193	57787											
CRMP1	1400	broad.mit.edu	37	chr4	5859110	5859110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatcatcaccatccttttcAtaatcactcccaccatcatc	0	18	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5859110	T	T	5859110	1	4	54	0	1	0	0	0	0	0	0	0	3922	232	8	5		5	CRMP1	4	5859110	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	14284	5859110	185295166	1194	57788											
JAKMIP1	152789	broad.mit.edu	37	chr4	6042553	6042553	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccgaattgggggcactcaGatgagaagggacttggtggt	16	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6042553	C	C	6042553	1	2	54	0	1	0	0	0	0	0	0	0	8010	957	33	4		4	JAKMIP1	4	6042553	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	183443	6042553	185111723	1195	57789											
PPP2R2C	5522	broad.mit.edu	37	chr4	6330937	6330937	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcccagacccctgcaggGcagaaaccctccctacggtg	10	18	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6330937	A	A	6330937	1	1	54	0	1	0	0	0	0	0	0	0	12487	1218	42	4		4	PPP2R2C	4	6330937	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	288384	6330937	184823339	1196	57790											
PPP2R2C	5522	broad.mit.edu	37	chr4	6377357	6377357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagcctagaagaaacgtGgtcatctgtatgctgctggt	12	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6377357	T	T	6377357	1	4	54	0	1	0	0	0	0	0	0	0	12487	1363	47	2		2	PPP2R2C	4	6377357	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46420	6377357	184776919	1197	57791											
PPP2R2C	5522	broad.mit.edu	37	chr4	6377597	6377597	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttcccctcttcatccttCaggttgtatccttcgggcct	7	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6377597	T	T	6377597	2	4	54	1	0	0	0	0	0	0	0	1	12487	813	29	4		4	PPP2R2C	4	6377597	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	240	6377597	184776679	1198	57792											
SORCS2	57537	broad.mit.edu	37	chr4	7650574	7650574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacaggtgccagggcagGcctagggagcaatgggagtg	20	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7650574	T	T	7650574	1	4	54	0	1	0	0	0	0	0	0	0	15045	1218	42	3		3	SORCS2	4	7650574	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1272977	7650574	183503702	1199	57793											
SORCS2	57537	broad.mit.edu	37	chr4	7669159	7669159	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccagcttcatcctaggcctCtgccaggctcttccctctgc	7	19	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7669159	G	G	7669159	1	3	54	0	1	0	0	0	0	0	0	0	15045	928	32	4		4	SORCS2	4	7669159	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18585	7669159	183485117	1200	57794											
ABLIM2	84448	broad.mit.edu	37	chr4	8079318	8079318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggggcagttaggccctaGctcagagcgggcaggggccc	19	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8079318	T	T	8079318	1	4	54	0	1	0	0	0	0	0	0	0	95	986	34	3		3	ABLIM2	4	8079318	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	410159	8079318	183074958	1201	57795											
CPZ	8532	broad.mit.edu	37	chr4	8602996	8602996	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgttctacaccagctcctgGaaggccagtgcaacccggac	11	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8602996	A	A	8602996	3	1	54	1	0	0	0	0	1	0	0	0	3871	1175	41	4	278	4	CPZ	4	8602996	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	523678	8602996	182551280	1202	57796											
CPZ	8532	broad.mit.edu	37	chr4	8616235	8616235	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgtggagacggtgagttctGacggtctcagggctctggtc	16	9	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8616235	T	T	8616235	1	4	54	0	1	0	0	0	0	0	0	0	3871	1305	45	3		3	CPZ	4	8616235	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13239	8616235	182538041	1203	57797											
SLC2A9	56606	broad.mit.edu	37	chr4	9982958	9982958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgatagtgatggtgtGgtggtggtggtgatggtgat	22	0	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9982958	T	T	9982958	1	4	54	0	1	0	0	0	0	0	0	0	14666	1363	47	2		2	SLC2A9	4	9982958	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1366723	9982958	181171318	1204	57798											
CLNK	116449	broad.mit.edu	37	chr4	10522329	10522329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcagctcagtggctctgGggttcacaacagctaagtca	10	11	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10522329	T	T	10522329	1	4	54	0	1	0	0	0	0	0	0	0	3579	1247	43	2		2	CLNK	4	10522329	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	539371	10522329	180631947	1205	57799											
CLNK	116449	broad.mit.edu	37	chr4	10542277	10542277	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaagtttgctgcagcagtGatgcctcaggccctgaatcc	11	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10542277	A	A	10542277	1	1	54	0	1	0	0	0	0	0	0	0	3579	1305	45	4		4	CLNK	4	10542277	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19948	10542277	180611999	1206	57800											
RAB28	9364	broad.mit.edu	37	chr4	13383066	13383066	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtatacttcctaggaatgtTagtaaataaaaggaaaacat	7	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13383066	A	A	13383066	1	1	54	0	1	0	0	0	0	0	0	0	13024	1769	61	5		5	RAB28	4	13383066	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2840789	13383066	177771210	1207	57801											
C1QTNF7	114905	broad.mit.edu	37	chr4	15361731	15361731	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtaacagcactgttctatCcacagaaaaggccttcaaag	8	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15361731	A	A	15361731	1	1	54	0	1	0	0	0	0	0	0	0	1988	870	30	3		3	C1QTNF7	4	15361731	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1978665	15361731	175792545	1208	57802											
C1QTNF7	114905	broad.mit.edu	37	chr4	15394125	15394125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcacccaaagacactagcCctgccttccacattccaaga	4	18	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15394125	A	A	15394125	1	1	54	0	1	0	0	0	0	0	0	0	1988	638	22	2		2	C1QTNF7	4	15394125	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	32394	15394125	175760151	1209	57803											
LDB2	9079	broad.mit.edu	37	chr4	16512023	16512023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatatagaactgttccaGgtcatggagttgaataaagg	12	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16512023	T	T	16512023	1	4	54	0	1	0	0	0	0	0	0	0	8768	1015	35	2		2	LDB2	4	16512023	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1117898	16512023	174642253	1210	57804											
LDB2	9079	broad.mit.edu	37	chr4	16587650	16587650	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaatggaaaaaaaaccccaCatgtattttatcactacagg	5	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16587650	T	T	16587650	1	4	54	0	1	0	0	0	0	0	0	0	8768	493	17	4		4	LDB2	4	16587650	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	75627	16587650	174566626	1211	57805											
QDPR	5860	broad.mit.edu	37	chr4	17510895	17510895	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggcctttttgaaactaccTggtcagcctgctcagtgaac	11	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17510895	A	A	17510895	3	1	54	1	0	0	0	0	1	0	0	0	12980	1594	55	5	561	5	QDPR	4	17510895	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	923245	17510895	173643381	1212	57806											
CLRN2	645104	broad.mit.edu	37	chr4	17524390	17524390	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgctgtcttgccctcacCcctgtctgtcgaagccttcg	9	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17524390	A	A	17524390	1	1	54	0	1	0	0	0	0	0	0	0	3590	638	22	2		2	CLRN2	4	17524390	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13495	17524390	173629886	1213	57807											
MED28	80306	broad.mit.edu	37	chr4	17616473	17616473	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgtctttgtccctagccttCccttttttctgaaacgtgaa	7	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17616473	T	T	17616473	1	4	54	0	1	0	0	0	0	0	0	0	9539	870	30	4		4	MED28	4	17616473	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92083	17616473	173537803	1214	57808											
SLIT2	9353	broad.mit.edu	37	chr4	20525756	20525756	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcccccgccgcctggcaaAcaaaagaattggacagatca	9	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20525756	G	G	20525756	3	3	54	1	0	0	0	0	1	0	0	0	14854	43	2	5	1448	5	SLIT2	4	20525756	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2909283	20525756	170628520	1215	57809											
PACRGL	133015	broad.mit.edu	37	chr4	20706533	20706533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgagttttgtccctttGctagttttgagctaataatg	10	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20706533	T	T	20706533	1	4	54	0	1	0	0	0	0	0	0	0	11465	1334	46	3		3	PACRGL	4	20706533	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	180777	20706533	170447743	1216	57810											
KCNIP4	80333	broad.mit.edu	37	chr4	20783570	20783570	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaatcacaagcaagctagTtacttcctagatacaatggg	7	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20783570	G	G	20783570	1	3	54	0	1	0	0	0	0	0	0	0	8112	1740	60	5		5	KCNIP4	4	20783570	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	77037	20783570	170370706	1217	57811											
KCNIP4	80333	broad.mit.edu	37	chr4	20870958	20870958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccttaattcccccacatGttcaatggcatagaaataga	7	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20870958	T	T	20870958	1	4	54	0	1	0	0	0	0	0	0	0	8112	1392	48	3		3	KCNIP4	4	20870958	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	87388	20870958	170283318	1218	57812											
KCNIP4	80333	broad.mit.edu	37	chr4	21014941	21014941	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaagactttcagggaggtaGagtgggaaccagaggccagg	17	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21014941	T	T	21014941	1	4	54	0	1	0	0	0	0	0	0	0	8112	957	33	3		3	KCNIP4	4	21014941	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	143983	21014941	170139335	1219	57813											
KCNIP4	80333	broad.mit.edu	37	chr4	21263434	21263434	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctactgtcacttctccccaGactataaaataaattacaga	4	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21263434	T	T	21263434	1	4	54	0	1	0	0	0	0	0	0	0	8112	957	33	3		3	KCNIP4	4	21263434	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	248493	21263434	169890842	1220	57814											
GPR125	166647	broad.mit.edu	37	chr4	22437114	22437114	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttcaaaggcaaaaatgatCaacaaaacagtcattagcaa	5	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22437114	A	A	22437114	1	1	54	0	1	0	0	0	0	0	0	0	6704	841	29	3		3	GPR125	4	22437114	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1173680	22437114	168717162	1221	57815											
GPR125	166647	broad.mit.edu	37	chr4	22446767	22446767	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaattccctgtaacatgCaaatacaacttagagattat	6	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22446767	G	G	22446767	1	3	54	0	1	0	0	0	0	0	0	0	6704	725	25	4		4	GPR125	4	22446767	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9653	22446767	168707509	1222	57816											
GBA3	57733	broad.mit.edu	37	chr4	22749369	22749369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaagctgctaaaagagCcatcactttccatctggatt	8	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22749369	A	A	22749369	3	1	54	1	0	0	0	0	1	0	0	0	6330	739	26	3	747	3	GBA3	4	22749369	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	302602	22749369	168404907	1223	57817											
DHX15	1665	broad.mit.edu	37	chr4	24541684	24541684	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaaagtgaagtccaccCaaactttgaagagctgggct	9	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24541684	G	G	24541684	1	3	54	0	1	0	0	0	0	0	0	0	4541	609	21	4		4	DHX15	4	24541684	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1792315	24541684	166612592	1224	57818											
CCDC149	91050	broad.mit.edu	37	chr4	24838087	24838087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatgtttgatttcaagaGgttgacctcttcatggagtt	11	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24838087	T	T	24838087	3	4	54	1	0	0	0	0	1	0	0	0	2809	1000	35	2	911	2	CCDC149	4	24838087	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	296403	24838087	166316189	1225	57819											
CCDC149	91050	broad.mit.edu	37	chr4	24878391	24878391	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attaaacacacaccgtacttCacacaccctgtggggaattt	6	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24878391	G	G	24878391	1	3	54	0	1	0	0	0	0	0	0	0	2809	841	29	4		4	CCDC149	4	24878391	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	40304	24878391	166275885	1226	57820											
LGI2	55203	broad.mit.edu	37	chr4	25007834	25007834	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggggaccattttccgtggtGactctcccctctggctcacc	10	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25007834	T	T	25007834	1	4	54	0	1	0	0	0	0	0	0	0	8824	1305	45	3		3	LGI2	4	25007834	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	129443	25007834	166146442	1227	57821											
RBPJ	3516	broad.mit.edu	37	chr4	26400297	26400297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctggagtgcagtgacGtaatctcagctcactgcaac	11	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26400297	T	T	26400297	1	4	54	0	1	0	0	0	0	0	0	0	13269	1160	40	3		3	RBPJ	4	26400297	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1392463	26400297	164753979	1228	57822											
RBPJ	3516	broad.mit.edu	37	chr4	26432487	26432487	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accagggccgcggccacattGcagtgcagcaggagcaatcc	13	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26432487	C	C	26432487	3	2	54	1	0	0	0	0	1	0	0	0	13269	1319	46	4	1466	4	RBPJ	4	26432487	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32190	26432487	164721789	1229	57823											
PCDH7	5099	broad.mit.edu	37	chr4	30847911	30847911	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgccctcatgaatggattcAtgttgctatcacaggaggca	10	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30847911	T	T	30847911	1	4	54	0	1	0	0	0	0	0	0	0	11610	232	8	5		5	PCDH7	4	30847911	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4415424	30847911	160306365	1230	57824											
PCDH7	5099	broad.mit.edu	37	chr4	30912485	30912485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacacatgcacacgtatGtttactgtaacactattcac	5	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30912485	T	T	30912485	1	4	54	0	1	0	0	0	0	0	0	0	11610	1392	48	3		3	PCDH7	4	30912485	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	64574	30912485	160241791	1231	57825											
ARAP2	116984	broad.mit.edu	37	chr4	36135189	36135189	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagtcacatcactccatagCattgaggaagctctctgaat	7	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36135189	T	T	36135189	1	4	54	0	1	0	0	0	0	0	0	0	841	725	25	4		4	ARAP2	4	36135189	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5222704	36135189	155019087	1232	57826											
TBC1D1	23216	broad.mit.edu	37	chr4	38117331	38117331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatgtattcttttcacagGgcgaacctttcctacacacc	5	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38117331	T	T	38117331	3	4	54	1	0	0	0	0	1	0	0	0	15716	1246	43	2	2616	2	TBC1D1	4	38117331	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1982142	38117331	153036945	1233	57827											
KLB	152831	broad.mit.edu	37	chr4	39448730	39448730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atacattgcctccaagcaccGacgggggctttccagctcgg	11	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39448730	T	T	39448730	3	4	54	1	0	0	0	0	1	0	0	0	8403	1058	37	3	2398	3	KLB	4	39448730	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1331399	39448730	151705546	1234	57828											
RBM47	54502	broad.mit.edu	37	chr4	40440684	40440684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgtcgcgcgggatcttgCccacgaagacctcgcagcca	11	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40440684	A	A	40440684	3	1	54	1	0	0	0	0	1	0	0	0	13249	739	26	3	1570	3	RBM47	4	40440684	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	991954	40440684	150713592	1235	57829											
NSUN7	79730	broad.mit.edu	37	chr4	40752747	40752747	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgaactggagttttcgaacGaagaagatcccgagatcatc	11	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40752747	A	A	40752747	3	1	54	1	0	0	0	0	1	0	0	0	10778	1059	37	4	39	4	NSUN7	4	40752747	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	312063	40752747	150401529	1236	57830											
LIMCH1	22998	broad.mit.edu	37	chr4	41404228	41404228	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagacatttatgcagccaaAagacacatgaaaaatgctca	7	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41404228	C	C	41404228	1	2	54	0	1	0	0	0	0	0	0	0	8869	29	1	5		5	LIMCH1	4	41404228	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	651481	41404228	149750048	1237	57831											
LIMCH1	22998	broad.mit.edu	37	chr4	41469572	41469572	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgtgagactcattcactgtCaggagaacagcataggaaaa	10	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41469572	T	T	41469572	1	4	54	0	1	0	0	0	0	0	0	0	8869	841	29	4		4	LIMCH1	4	41469572	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	65344	41469572	149684704	1238	57832											
LIMCH1	22998	broad.mit.edu	37	chr4	41691715	41691715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttttggcatcgttccgtGctgaaaaatgcctcttggaa	10	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41691715	T	T	41691715	1	4	54	0	1	0	0	0	0	0	0	0	8869	1334	46	3		3	LIMCH1	4	41691715	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	222143	41691715	149462561	1239	57833											
GABRA2	2555	broad.mit.edu	37	chr4	46305409	46305409	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattagtttgaggatcaagaGagataatgtttttgaaagta	10	1	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46305409	T	T	46305409	1	4	54	0	1	0	0	0	0	0	0	0	6221	957	33	3		3	GABRA2	4	46305409	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4613694	46305409	144848867	1240	57834											
COX7B2	170712	broad.mit.edu	37	chr4	46871593	46871593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtctggtgggtaacaaaCtccctcaacattcacttttc	7	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46871593	A	A	46871593	1	1	54	0	1	0	0	0	0	0	0	0	3815	580	20	3		3	COX7B2	4	46871593	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	566184	46871593	144282683	1241	57835											
GABRA4	2557	broad.mit.edu	37	chr4	46941070	46941070	+	Intron	DEL	G	-	-													agctgagatattagcaacaaGtaagttttaaataggcaaaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46941070	-	-	46941070	6	5	54	0	1	1	0	1	0	0	0	0	6223	1044	36	0		0	GABRA4	4	46941070	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	69477	46941070	144213206	1242	57836											
GABRA4	2557	broad.mit.edu	37	chr4	46994950	46994950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccttttggttctgtcctgGggattcgtttaaactgcaag	10	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46994950	T	T	46994950	3	4	54	1	0	0	0	0	1	0	0	0	6223	1232	43	2	1596	2	GABRA4	4	46994950	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	53880	46994950	144159326	1243	57837											
GABRB1	2560	broad.mit.edu	37	chr4	47150894	47150894	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgattaattgccatccAtaagaaagcaaggcagaagt	8	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47150894	T	T	47150894	1	4	54	0	1	0	0	0	0	0	0	0	6226	232	8	5		5	GABRB1	4	47150894	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	155944	47150894	144003382	1244	57838											
GABRB1	2560	broad.mit.edu	37	chr4	47364305	47364305	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgatggaactagaagtcaGagtggagtaaggtaaatgga	14	2	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47364305	T	T	47364305	1	4	54	0	1	0	0	0	0	0	0	0	6226	957	33	3		3	GABRB1	4	47364305	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	213411	47364305	143789971	1245	57839											
ATP10D	57205	broad.mit.edu	37	chr4	47589199	47589199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacttagtttgtatcctcaCgacgtccattgctcttctgc	6	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47589199	T	T	47589199	3	4	54	1	0	0	0	0	1	0	0	0	1122	536	19	4	3999	4	ATP10D	4	47589199	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	224894	47589199	143565077	1246	57840											
CORIN	10699	broad.mit.edu	37	chr4	47765383	47765383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttatcactgaataatctgGgttccgaaatacctgtcatc	6	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47765383	T	T	47765383	1	4	54	0	1	0	0	0	0	0	0	0	3784	1247	43	2		2	CORIN	4	47765383	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	176184	47765383	143388893	1247	57841											
NFXL1	152518	broad.mit.edu	37	chr4	47853839	47853839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataagaagggaaaggccaCtagtctttaaaatgatattt	8	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47853839	A	A	47853839	1	1	54	0	1	0	0	0	0	0	0	0	10483	580	20	3		3	NFXL1	4	47853839	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	88456	47853839	143300437	1248	57842											
TXK	7294	broad.mit.edu	37	chr4	48095877	48095877	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcatttttctaacctggtaGaaatataagaaattgaccta	5	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48095877	A	A	48095877	1	1	54	0	1	0	0	0	0	0	0	0	16912	957	33	4		4	TXK	4	48095877	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	242038	48095877	143058399	1249	57843											
CWH43	80157	broad.mit.edu	37	chr4	48996711	48996711	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcctctagacccaactggcTgctggcaggggctgcttttg	14	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48996711	A	A	48996711	3	1	54	1	0	0	0	0	1	0	0	0	4106	1580	55	5	605	5	CWH43	4	48996711	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	900834	48996711	142157565	1250	57844											
LRRC66	339977	broad.mit.edu	37	chr4	52861525	52861525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgccagctacagaagagaCgcccactgaatgtgcactga	11	12	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52861525	A	A	52861525	3	1	54	1	0	0	0	0	1	0	0	0	9105	536	19	3	983	3	LRRC66	4	52861525	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3864814	52861525	138292751	1251	57845											
SPATA18	132671	broad.mit.edu	37	chr4	52940643	52940643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggtggtgttcaaaaccaGggaagcatatgtgcaatgga	14	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52940643	T	T	52940643	1	4	54	0	1	0	0	0	0	0	0	0	15119	1015	35	2		2	SPATA18	4	52940643	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	79118	52940643	138213633	1252	57846											
SPATA18	132671	broad.mit.edu	37	chr4	52948456	52948456	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctatatttactcagatctGagcataatacaaaatgagaa	5	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52948456	T	T	52948456	1	4	54	0	1	0	0	0	0	0	0	0	15119	1305	45	3		3	SPATA18	4	52948456	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7813	52948456	138205820	1253	57847											
SCFD2	152579	broad.mit.edu	37	chr4	53745032	53745032	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcattttctaaaatgcttCttttgattctcagtattaga	5	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53745032	G	G	53745032	1	3	54	0	1	0	0	0	0	0	0	0	14002	928	32	4		4	SCFD2	4	53745032	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	796576	53745032	137409244	1254	57848											
PDGFRA	5156	broad.mit.edu	37	chr4	55144560	55144560	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatcacagagtattgcttCtatggagatttggtcaacta	8	7	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55144560	T	T	55144560	2	4	54	1	0	0	0	0	0	0	0	1	11755	912	32	4		4	PDGFRA	4	55144560	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1399528	55144560	136009716	1255	57849											
KIT	3815	broad.mit.edu	37	chr4	55564642	55564642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgatcaaaagtgtgaaacGcgcctaccatcggctctgtc	9	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55564642	T	T	55564642	3	4	54	1	0	0	0	0	1	0	0	0	8400	1087	38	3	540	3	KIT	4	55564642	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	420082	55564642	135589634	1256	57850											
KIT	3815	broad.mit.edu	37	chr4	55570038	55570038	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttggatcagcaaatgtcaCaacaaccttggaagtagtag	9	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55570038	T	T	55570038	3	4	54	1	0	0	0	0	1	0	0	0	8400	478	17	4	923	4	KIT	4	55570038	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5396	55570038	135584238	1257	57851											
KDR	3791	broad.mit.edu	37	chr4	55961048	55961048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggctactggtgatgctGtccaagcgccgtttcagatc	11	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55961048	T	T	55961048	3	4	54	1	0	0	0	0	1	0	0	0	8209	1368	48	3	1218	3	KDR	4	55961048	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	391010	55961048	135193228	1258	57852											
PDCL2	132954	broad.mit.edu	37	chr4	56448479	56448479	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttggaaaattcattaagatGtagcacttccaagtattcaa	6	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56448479	A	A	56448479	1	1	54	0	1	0	0	0	0	0	0	0	11721	1392	48	4		4	PDCL2	4	56448479	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	487431	56448479	134705797	1259	57853											
AASDH	132949	broad.mit.edu	37	chr4	57239818	57239818	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcccaacaaaggctaccCtcaaacttcaagttttagag	7	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57239818	T	T	57239818	1	4	54	0	1	0	0	0	0	0	0	0	22	696	24	4		4	AASDH	4	57239818	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	791339	57239818	133914458	1260	57854											
HOPX	84525	broad.mit.edu	37	chr4	57546605	57546606	+	Intron	DNP	TG	GT	GT													ccttcgttttgttctctgccTgccctggttatacttaacct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	57546606	GT	GT	57546605	1	3	54	0	1	0	0	0	0	0	0	0	7352	1595	55	5		5	HOPX	4	57546605	Intron	DNP	TG	TCGA-17-Z022-01A-01W-0746-08	306787	57546605	133607671	1261	57855											
SPINK2	6691	broad.mit.edu	37	chr4	57686702	57686702	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaagtggtttgctacttacCgttctatattttgaaaacag	8	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57686702	G	G	57686702	2	3	54	1	0	0	0	0	0	0	0	1	15178	666	23	4		4	SPINK2	4	57686702	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	140097	57686702	133467574	1262	57856											
LPHN3	23284	broad.mit.edu	37	chr4	62445166	62445166	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgaattggaagacaatgtGgaaagtgatttctattaaat	10	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62445166	A	A	62445166	1	1	54	0	1	0	0	0	0	0	0	0	9004	1363	47	4		4	LPHN3	4	62445166	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4758464	62445166	128709110	1263	57857											
LPHN3	23284	broad.mit.edu	37	chr4	62641234	62641234	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actccttgccatagtccttaActactgcacaactgcaacca	4	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62641234	T	T	62641234	1	4	54	0	1	0	0	0	0	0	0	0	9004	58	2	5		5	LPHN3	4	62641234	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	196068	62641234	128513042	1264	57858											
LPHN3	23284	broad.mit.edu	37	chr4	62641248	62641248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttaactactgcacaactGcaaccaaccactttatgagg	5	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62641248	T	T	62641248	1	4	54	0	1	0	0	0	0	0	0	0	9004	1334	46	3		3	LPHN3	4	62641248	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14	62641248	128513028	1265	57859											
LPHN3	23284	broad.mit.edu	37	chr4	62812489	62812489	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatttgaatttcctctcctCataaatgacttggtactttg	5	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62812489	A	A	62812489	1	1	54	0	1	0	0	0	0	0	0	0	9004	841	29	3		3	LPHN3	4	62812489	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	171241	62812489	128341787	1266	57860											
LPHN3	23284	broad.mit.edu	37	chr4	62873388	62873388	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agataccacaacatgtggggCctcatgcacaggtatgtgga	12	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62873388	G	G	62873388	1	3	54	0	1	0	0	0	0	0	0	0	9004	754	26	4		4	LPHN3	4	62873388	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	60899	62873388	128280888	1267	57861											
LPHN3	23284	broad.mit.edu	37	chr4	62894560	62894560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgttcttgtctttatgtctAtgcattctttagctatgagg	9	6	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62894560	T	T	62894560	1	4	54	0	1	0	0	0	0	0	0	0	9004	464	16	5		5	LPHN3	4	62894560	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	21172	62894560	128259716	1268	57862											
EPHA5	2044	broad.mit.edu	37	chr4	66199884	66199884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgttcagtgtctctctccCaacagtgcattggcttcata	7	11	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66199884	A	A	66199884	1	1	54	0	1	0	0	0	0	0	0	0	5212	609	21	2		2	EPHA5	4	66199884	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3305324	66199884	124954392	1269	57863											
EPHA5	2044	broad.mit.edu	37	chr4	66439635	66439635	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccgggaccattctgatcatCctcactggacgccacagggg	11	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66439635	T	T	66439635	1	4	54	0	1	0	0	0	0	0	0	0	5212	870	30	4		4	EPHA5	4	66439635	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	239751	66439635	124714641	1270	57864											
EPHA5	2044	broad.mit.edu	37	chr4	66439646	66439646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgatcatcctcactggacGccacaggggcaagagggtgg	14	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66439646	T	T	66439646	1	4	54	0	1	0	0	0	0	0	0	0	5212	1102	38	3		3	EPHA5	4	66439646	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11	66439646	124714630	1271	57865											
EPHA5	2044	broad.mit.edu	37	chr4	66467531	66467531	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaatcagctccagtgatGgtgtcagggaagacagccaa	13	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66467531	T	T	66467531	2	4	54	1	0	0	0	0	0	0	0	1	5212	1335	47	2		2	EPHA5	4	66467531	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27885	66467531	124686745	1272	57866											
UBA6	55236	broad.mit.edu	37	chr4	68529553	68529553	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcataatcactcactaattCtcatctctgattctgctgcc	3	13	6	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68529553	A	A	68529553	1	1	54	0	1	0	0	0	0	0	0	0	16958	928	32	3		3	UBA6	4	68529553	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2062022	68529553	122624723	1273	57867											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68928316	68928317	+	Intron	DNP	TC	CA	CA													ttgccgtccttttgactcttTcatttcagtccagtgattga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	68928317	CA	CA	68928316	1	2	54	0	1	0	0	0	0	0	0	0	16366	1798	62	5		5	TMPRSS11F	4	68928316	Intron	DNP	TC	TCGA-17-Z022-01A-01W-0746-08	398763	68928316	122225960	1274	57868											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68974187	68974187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacatttgcaagaattaaCtgctgaatttcacacggact	7	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68974187	A	A	68974187	1	1	54	0	1	0	0	0	0	0	0	0	16366	580	20	3		3	TMPRSS11F	4	68974187	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45871	68974187	122180089	1275	57869											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69101828	69101828	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcatcatgtatgtttcaatCaaatttataataaaattaat	3	4	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69101828	A	A	69101828	1	1	54	0	1	0	0	0	0	0	0	0	16363	841	29	3		3	TMPRSS11B	4	69101828	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	127641	69101828	122052448	1276	57870											
UGT2B4	7363	broad.mit.edu	37	chr4	70359446	70359446	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggtttgcagtggagtcCtccaacgaactcaacatttg	11	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70359446	G	G	70359446	3	3	54	1	0	0	0	0	1	0	0	0	17087	690	24	4	771	4	UGT2B4	4	70359446	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1257618	70359446	120794830	1277	57871											
UGT2A1	10941	broad.mit.edu	37	chr4	70505471	70505471	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtcgtaggtcaattgatCtttagattaaaaggtaaata	8	4	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70505471	A	A	70505471	1	1	54	0	1	0	0	0	0	0	0	0	17079	928	32	3		3	UGT2A1	4	70505471	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	146025	70505471	120648805	1278	57872											
SULT1B1	27284	broad.mit.edu	37	chr4	70615386	70615386	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaataaactatgtgagTgggtaaagggatagggccat	12	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70615386	A	A	70615386	1	1	54	0	1	0	0	0	0	0	0	0	15494	1711	59	5		5	SULT1B1	4	70615386	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	109915	70615386	120538890	1279	57873											
C4orf35	85438	broad.mit.edu	37	chr4	71201001	71201001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatcagaagatgatatggGgaccgactttattaagtcaa	9	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71201001	T	T	71201001	3	4	54	1	0	0	0	0	1	0	0	0	2288	1232	43	2	247	2	C4orf35	4	71201001	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	585615	71201001	119953275	1280	57874											
AMTN	401138	broad.mit.edu	37	chr4	71389472	71389472	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttcatctttatttaccttCatggtaaacccacctctgac	4	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71389472	G	G	71389472	1	3	54	0	1	0	0	0	0	0	0	0	590	841	29	4		4	AMTN	4	71389472	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	188471	71389472	119764804	1281	57875											
ENAM	10117	broad.mit.edu	37	chr4	71509884	71509884	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctgtatacagacggtaGtcataccaagcagacaagag	9	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71509884	A	A	71509884	3	1	54	1	0	0	0	0	1	0	0	0	5154	1029	36	4	2771	4	ENAM	4	71509884	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	120412	71509884	119644392	1282	57876											
SLC4A4	8671	broad.mit.edu	37	chr4	72143112	72143112	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctatttccctaatggctAgtggtgttgagtatcttttt	8	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72143112	G	G	72143112	1	3	54	0	1	0	0	0	0	0	0	0	14770	435	15	5		5	SLC4A4	4	72143112	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	633228	72143112	119011164	1283	57877											
SLC4A4	8671	broad.mit.edu	37	chr4	72413458	72413458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaatatgtgaaacattcaCctcttccttctcagaacact	4	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72413458	A	A	72413458	1	1	54	0	1	0	0	0	0	0	0	0	14770	522	18	3		3	SLC4A4	4	72413458	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	270346	72413458	118740818	1284	57878											
SLC4A4	8671	broad.mit.edu	37	chr4	72423424	72423424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcctttcctctttcctcCccagttcatggatcgtctga	6	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72423424	A	A	72423424	1	1	54	0	1	0	0	0	0	0	0	0	14770	638	22	2		2	SLC4A4	4	72423424	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9966	72423424	118730852	1285	57879											
ADAMTS3	9508	broad.mit.edu	37	chr4	73188685	73188685	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatttagtcttctatttgcTaacccagtccctaatgttta	4	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73188685	A	A	73188685	1	1	54	0	1	0	0	0	0	0	0	0	267	1537	53	5		5	ADAMTS3	4	73188685	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	765261	73188685	117965591	1286	57880											
ADAMTS3	9508	broad.mit.edu	37	chr4	73275037	73275037	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctcatgaatcagtaattGatacagcttttttctgagta	6	7	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73275037	C	C	73275037	1	2	54	0	1	0	0	0	0	0	0	0	267	1305	45	4		4	ADAMTS3	4	73275037	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	86352	73275037	117879239	1287	57881											
ANKRD17	26057	broad.mit.edu	37	chr4	73942560	73942560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcaactgcccatattcaCcaaactctcttgctatcatg	3	15	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73942560	A	A	73942560	1	1	54	0	1	0	0	0	0	0	0	0	646	522	18	3		3	ANKRD17	4	73942560	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	667523	73942560	117211716	1288	57882											
IL8	3576	broad.mit.edu	37	chr4	74670284	74670284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatcaccacaggacctaCcttacaagaggtccttaagg	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74670284	A	A	74670284	1	1	54	0	1	0	0	0	0	0	0	0	7776	522	18	3		3	IL8	4	74670284	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	727724	74670284	116483992	1289	57883											
RCHY1	25898	broad.mit.edu	37	chr4	76415855	76415855	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctacttcatcatccagctgtCtccaatacctggtcatatct	4	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76415855	A	A	76415855	3	1	54	1	0	0	0	0	1	0	0	0	13285	913	32	3	200	3	RCHY1	4	76415855	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1745571	76415855	114738421	1290	57884											
CXCL11	6373	broad.mit.edu	37	chr4	76957126	76957126	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagccaaggctatagccatGcccttcacactcatgtttgt	7	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76957126	A	A	76957126	2	1	54	1	0	0	0	0	0	0	0	1	4112	1306	46	4		4	CXCL11	4	76957126	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	541271	76957126	114197150	1291	57885											
CNOT6L	246175	broad.mit.edu	37	chr4	78666127	78666127	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgcacaagcacacacacaTacgccacatatcatcattgt	4	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78666127	A	A	78666127	1	1	54	0	1	0	0	0	0	0	0	0	3655	1421	49	5		5	CNOT6L	4	78666127	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1709001	78666127	112488149	1292	57886											
C4orf22	255119	broad.mit.edu	37	chr4	81849087	81849087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacagaagggatagatcaCaggtgatattttcaattcta	9	5	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81849087	A	A	81849087	1	1	54	0	1	0	0	0	0	0	0	0	2278	493	17	3		3	C4orf22	4	81849087	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3182960	81849087	109305189	1293	57887											
MAPK10	5602	broad.mit.edu	37	chr4	86988935	86988935	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagggcatacctttgagttTattgtgctcggagtccgctg	13	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86988935	A	A	86988935	4	1	54	1	0	0	0	0	0	1	0	0	9364	1763	61	5	443	5	MAPK10	4	86988935	Nonsense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5139848	86988935	104165341	1294	57888											
PTPN13	5783	broad.mit.edu	37	chr4	87703391	87703391	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttgcagccagcctgccctCactcctaatgattcattctc	5	16	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87703391	T	T	87703391	2	4	54	1	0	0	0	0	0	0	0	1	12888	813	29	4		4	PTPN13	4	87703391	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	714456	87703391	103450885	1295	57889											
DSPP	1834	broad.mit.edu	37	chr4	88535154	88535154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggtagtgacagcaataGtgatggatatgacagttatg	12	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88535154	T	T	88535154	3	4	54	1	0	0	0	0	1	0	0	0	4822	1029	36	3	1354	3	DSPP	4	88535154	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	831763	88535154	102619122	1296	57890											
MEPE	56955	broad.mit.edu	37	chr4	88759977	88759977	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaacataatgttggcacttTctagtcaatcaggtattgta	7	7	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88759977	C	C	88759977	1	2	54	0	1	0	0	0	0	0	0	0	9571	1798	62	5		5	MEPE	4	88759977	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	224823	88759977	102394299	1297	57891											
ABCG2	9429	broad.mit.edu	37	chr4	89052258	89052258	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaactcttgaatgaccctGttaatccgttcgtttttttc	5	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89052258	A	A	89052258	2	1	54	1	0	0	0	0	0	0	0	1	69	1368	48	4		4	ABCG2	4	89052258	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	292281	89052258	102102018	1298	57892											
ABCG2	9429	broad.mit.edu	37	chr4	89149162	89149162	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaccttcatttctccattcaGaggttgaaattacaatctcc	5	11	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89149162	C	C	89149162	1	2	54	0	1	0	0	0	0	0	0	0	69	957	33	4		4	ABCG2	4	89149162	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96904	89149162	102005114	1299	57893											
HERC3	8916	broad.mit.edu	37	chr4	89576324	89576324	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtgtttgttccttgttaGagtggaggtgtgtttacctt	13	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89576324	C	C	89576324	5	2	54	1	0	0	0	0	0	0	1	0	7126	956	33	4	799	4	HERC3	4	89576324	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	427162	89576324	101577952	1300	57894											
HERC3	8916	broad.mit.edu	37	chr4	89576460	89576461	+	Intron	DEL	GT	-	-													aaattgcttgtggcaggtgaGtgttcctcaaagcttgcttg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89576461	-	-	89576460	6	5	54	0	1	1	0	1	0	0	0	0	7126	1044	36	0		0	HERC3	4	89576460	Intron	DEL	GT	TCGA-17-Z022-01A-01W-0746-08	136	89576460	101577816	1301	57895											
FAM13A	10144	broad.mit.edu	37	chr4	89972074	89972074	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcaacagagcaagacttcTatctccaaaaaaaaagaact	7	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89972074	C	C	89972074	1	2	54	0	1	0	0	0	0	0	0	0	5498	1537	53	5		5	FAM13A	4	89972074	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	395614	89972074	101182202	1302	57896											
FAM190A	401145	broad.mit.edu	37	chr4	91199559	91199559	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgctattcataatacaAaaaacatagaatcatccctg	4	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91199559	G	G	91199559	1	3	54	0	1	0	0	0	0	0	0	0	5568	29	1	5		5	FAM190A	4	91199559	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1227485	91199559	99954717	1303	57897											
FAM190A	401145	broad.mit.edu	37	chr4	92194934	92194934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaggtatgtccctatatGccaattttgctgagagtttt	9	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92194934	T	T	92194934	1	4	54	0	1	0	0	0	0	0	0	0	5568	1334	46	3		3	FAM190A	4	92194934	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	995375	92194934	98959342	1304	57898											
FAM190A	401145	broad.mit.edu	37	chr4	92277973	92277973	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaagctggatggccctcgGggatgacctgcagggacttc	16	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92277973	A	A	92277973	1	1	54	0	1	0	0	0	0	0	0	0	5568	1247	43	4		4	FAM190A	4	92277973	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	83039	92277973	98876303	1305	57899											
GRID2	2895	broad.mit.edu	37	chr4	93511345	93511345	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgcactgcggttggtgaccTtaaccagaatgaggagatct	12	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93511345	A	A	93511345	3	1	54	1	0	0	0	0	1	0	0	0	6838	1609	56	5	158	5	GRID2	4	93511345	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1233372	93511345	97642931	1306	57900											
GRID2	2895	broad.mit.edu	37	chr4	94137749	94137749	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacaaaaatatgttgctttCatttagatatgcactaagca	5	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94137749	T	T	94137749	1	4	54	0	1	0	0	0	0	0	0	0	6838	841	29	4		4	GRID2	4	94137749	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	626404	94137749	97016527	1307	57901											
GRID2	2895	broad.mit.edu	37	chr4	94247340	94247340	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactaggtgctcagaaaatTattggaagtgccgaagaagt	12	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94247340	A	A	94247340	1	1	54	0	1	0	0	0	0	0	0	0	6838	1769	61	5		5	GRID2	4	94247340	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	109591	94247340	96906936	1308	57902											
GRID2	2895	broad.mit.edu	37	chr4	94446451	94446451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaaaatgggatagggaGgagagggcctgagcaaaggc	16	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94446451	T	T	94446451	1	4	54	0	1	0	0	0	0	0	0	0	6838	1015	35	2		2	GRID2	4	94446451	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	199111	94446451	96707825	1309	57903											
GRID2	2895	broad.mit.edu	37	chr4	94615369	94615369	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actttcatttctgtgatcctGctctcccaaacactgctatg	5	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94615369	C	C	94615369	1	2	54	0	1	0	0	0	0	0	0	0	6838	1334	46	4		4	GRID2	4	94615369	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	168918	94615369	96538907	1310	57904											
BMPR1B	658	broad.mit.edu	37	chr4	96052782	96052782	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcattaattttgacatttgAcggggagaaccaccaaacat	7	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96052782	T	T	96052782	1	4	54	0	1	0	0	0	0	0	0	0	1476	290	10	5		5	BMPR1B	4	96052782	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1437413	96052782	95101494	1311	57905											
UNC5C	8633	broad.mit.edu	37	chr4	96128003	96128003	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccattgtattcatgaactaTgcacttgggttctgaaggca	9	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96128003	C	C	96128003	1	2	54	0	1	0	0	0	0	0	0	0	17119	1479	51	5		5	UNC5C	4	96128003	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	75221	96128003	95026273	1312	57906											
UNC5C	8633	broad.mit.edu	37	chr4	96151787	96151787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtataaggtgtaaggaaggGgtccagttttagttttctgc	13	4	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96151787	T	T	96151787	1	4	54	0	1	0	0	0	0	0	0	0	17119	1247	43	2		2	UNC5C	4	96151787	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23784	96151787	95002489	1313	57907											
PDHA2	5161	broad.mit.edu	37	chr4	96762259	96762259	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcctataataattctccaaGatagaatggtaaacagcaag	6	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96762259	T	T	96762259	3	4	54	1	0	0	0	0	1	0	0	0	11759	942	33	3	960	3	PDHA2	4	96762259	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	610472	96762259	94392017	1314	57908											
C4orf37	285555	broad.mit.edu	37	chr4	98515460	98515460	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattttaagaaagaaccaaaCtgatctgatagagctgaaaa	7	6	1	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98515460	G	G	98515460	1	3	54	0	1	0	0	0	0	0	0	0	2290	580	20	4		4	C4orf37	4	98515460	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1753201	98515460	92638816	1315	57909											
C4orf37	285555	broad.mit.edu	37	chr4	98883399	98883400	+	Intron	DNP	GG	TT	TT													ggaataaaggactacaaattGggtgcagtgtatattgctgg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	98883400	TT	TT	98883399	1	4	54	0	1	0	0	0	0	0	0	0	2290	1363	47	2		2	C4orf37	4	98883399	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	367939	98883399	92270877	1316	57910											
ADH1A	124	broad.mit.edu	37	chr4	100203866	100203866	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttctgttcaatctgttatCaaaacctcttttggcttcag	5	10	7	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100203866	G	G	100203866	1	3	54	0	1	0	0	0	0	0	0	0	307	841	29	4		4	ADH1A	4	100203866	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1320467	100203866	90950410	1317	57911											
CENPE	1062	broad.mit.edu	37	chr4	104055616	104055616	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggctaacacagtgaaacCctgtctctactaaaaataca	5	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104055616	T	T	104055616	1	4	54	0	1	0	0	0	0	0	0	0	3260	638	22	4		4	CENPE	4	104055616	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3851750	104055616	87098660	1318	57912											
CENPE	1062	broad.mit.edu	37	chr4	104068942	104068942	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcactgcaacttctgcctcCtgggttcaagagattctcct	7	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104068942	T	T	104068942	1	4	54	0	1	0	0	0	0	0	0	0	3260	696	24	4		4	CENPE	4	104068942	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13326	104068942	87085334	1319	57913											
TACR3	6870	broad.mit.edu	37	chr4	104640351	104640351	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgataggaaagaagttcTggaagcggcagtagttggcg	16	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104640351	A	A	104640351	3	1	54	1	0	0	0	0	1	0	0	0	15626	1580	55	5	935	5	TACR3	4	104640351	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	571409	104640351	86513925	1320	57914											
NPNT	255743	broad.mit.edu	37	chr4	106858224	106858224	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtgcatgaacacttaCggcagctacaagtgctactg	10	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106858224	T	T	106858224	2	4	54	1	0	0	0	0	0	0	0	1	10685	547	19	4		4	NPNT	4	106858224	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2217873	106858224	84296052	1321	57915											
HADH	3033	broad.mit.edu	37	chr4	108955412	108955412	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggtggcatgaaatggatGcagagaacccattacatcag	12	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108955412	A	A	108955412	3	1	54	1	0	0	0	0	1	0	0	0	7008	1319	46	4	929	4	HADH	4	108955412	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2097188	108955412	82198864	1322	57916											
LEF1	51176	broad.mit.edu	37	chr4	109037536	109037536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatagaaaagttagctgGgcgtggtggcacatgcctgt	13	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109037536	T	T	109037536	1	4	54	0	1	0	0	0	0	0	0	0	8786	1247	43	2		2	LEF1	4	109037536	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	82124	109037536	82116740	1323	57917											
COL25A1	84570	broad.mit.edu	37	chr4	109745272	109745272	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaatcacacaagctgaacaGcaaagcagacagcaggagaa	11	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109745272	C	C	109745272	1	2	54	0	1	0	0	0	0	0	0	0	3716	962	34	4		4	COL25A1	4	109745272	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	707736	109745272	81409004	1324	57918											
COL25A1	84570	broad.mit.edu	37	chr4	109767294	109767294	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagaaagtataaacataCcggtaatccaggaagtccaa	7	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109767294	A	A	109767294	5	1	54	1	0	0	0	0	0	0	1	0	3716	521	18	3	576	3	COL25A1	4	109767294	Splice_Site	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22022	109767294	81386982	1325	57919											
COL25A1	84570	broad.mit.edu	37	chr4	109780836	109780836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcttcgtggaggttgccGttgtagtctatgatctcagt	13	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109780836	T	T	109780836	3	4	54	1	0	0	0	0	1	0	0	0	3716	1136	40	3	812	3	COL25A1	4	109780836	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13542	109780836	81373440	1326	57920											
COL25A1	84570	broad.mit.edu	37	chr4	109938329	109938329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcttatccagccacagGtttgcacagagccggcatct	9	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109938329	T	T	109938329	1	4	54	0	1	0	0	0	0	0	0	0	3716	1276	44	3		3	COL25A1	4	109938329	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	157493	109938329	81215947	1327	57921											
COL25A1	84570	broad.mit.edu	37	chr4	110120595	110120595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggcatgagccaccgtgcCcagtcaaaattggaattgca	10	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110120595	A	A	110120595	1	1	54	0	1	0	0	0	0	0	0	0	3716	638	22	2		2	COL25A1	4	110120595	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	182266	110120595	81033681	1328	57922											
SEC24B	10427	broad.mit.edu	37	chr4	110370769	110370769	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgagggccctctatccAccttgtcactgtgtgctcac	8	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110370769	T	T	110370769	1	4	54	0	1	0	0	0	0	0	0	0	14108	174	6	5		5	SEC24B	4	110370769	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	250174	110370769	80783507	1329	57923											
RRH	10692	broad.mit.edu	37	chr4	110754370	110754370	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacttcggacacccacaaAtgcaattattattaacctgg	7	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110754370	G	G	110754370	3	3	54	1	0	0	0	0	1	0	0	0	13791	101	4	5	188	5	RRH	4	110754370	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	383601	110754370	80399906	1330	57924											
EGF	1950	broad.mit.edu	37	chr4	110901367	110901367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaattgtttgatgtcatGcagttggcgggggggtggag	17	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110901367	T	T	110901367	1	4	54	0	1	0	0	0	0	0	0	0	5002	1334	46	3		3	EGF	4	110901367	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	146997	110901367	80252909	1331	57925											
EGF	1950	broad.mit.edu	37	chr4	110925817	110925817	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaagcaaggaattggcttGatattaacccctattcattt	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110925817	C	C	110925817	1	2	54	0	1	0	0	0	0	0	0	0	5002	1305	45	4		4	EGF	4	110925817	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	24450	110925817	80228459	1332	57926											
ANK2	287	broad.mit.edu	37	chr4	113970764	113970764	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtccttaccctcccagtgCgcgccccttccccacccctc	5	25	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113970764	A	A	113970764	1	1	54	0	1	0	0	0	0	0	0	0	621	783	27	3		3	ANK2	4	113970764	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3044947	113970764	77183512	1333	57927											
ANK2	287	broad.mit.edu	37	chr4	114238970	114238970	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattcccagtcaccaggtatGtgacattttgccttcatgtc	8	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114238970	A	A	114238970	1	1	54	0	1	0	0	0	0	0	0	0	621	1392	48	4		4	ANK2	4	114238970	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	268206	114238970	76915306	1334	57928											
ANK2	287	broad.mit.edu	37	chr4	114252939	114252939	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtgctctccttgcacagAcgcgcctccattgtacactc	7	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114252939	G	G	114252939	1	3	54	0	1	0	0	0	0	0	0	0	621	290	10	5		5	ANK2	4	114252939	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	13969	114252939	76901337	1335	57929											
ANK2	287	broad.mit.edu	37	chr4	114257968	114257968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgactgtgttcgtagagaGttctgaaaaaagaaacttag	10	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114257968	T	T	114257968	1	4	54	0	1	0	0	0	0	0	0	0	621	1044	36	3		3	ANK2	4	114257968	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5029	114257968	76896308	1336	57930											
ANK2	287	broad.mit.edu	37	chr4	114290761	114290761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgaggaagttagcaccCctgcagaggaggagaagctg	14	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114290761	A	A	114290761	3	1	54	1	0	0	0	0	1	0	0	0	621	623	22	2	11645	2	ANK2	4	114290761	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	32793	114290761	76863515	1337	57931											
ANK2	287	broad.mit.edu	37	chr4	114290873	114290873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagagaggagagctctcCgcggaaaaccagcctcgtaa	12	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114290873	A	A	114290873	3	1	54	1	0	0	0	0	1	0	0	0	621	652	23	1	11757	1	ANK2	4	114290873	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112	114290873	76863403	1338	57932											
CAMK2D	817	broad.mit.edu	37	chr4	114378602	114378602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattgtctttggcattccaCtgccatccatgtactgtgtg	9	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114378602	A	A	114378602	3	1	54	1	0	0	0	0	1	0	0	0	2627	565	20	3	197	3	CAMK2D	4	114378602	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87729	114378602	76775674	1339	57933											
NDST4	64579	broad.mit.edu	37	chr4	115791971	115791971	+	Frame_Shift_Del	DEL	G	-	-													gaagagctcaaaatactggtGggccagttgcactggaggca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115791971	-	-	115791971	7	5	54	1	0	1	0	1	0	0	0	0	10353	1348	47	0	978	0	NDST4	4	115791971	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	1413369	115791971	75362305	1340	57934											
NDST4	64579	broad.mit.edu	37	chr4	115838903	115838903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacataatgaagttcacacGgtagctctgctactcacaag	7	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115838903	T	T	115838903	1	4	54	0	1	0	0	0	0	0	0	0	10353	1131	39	1		1	NDST4	4	115838903	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46932	115838903	75315373	1341	57935											
NDST4	64579	broad.mit.edu	37	chr4	115997856	115997856	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggtatatctccctttcCaggggcaataaccatgtggt	11	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115997856	A	A	115997856	4	1	54	1	0	0	0	0	0	1	0	0	10353	603	21	2	2333	2	NDST4	4	115997856	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	158953	115997856	75156420	1342	57936											
NDST3	9348	broad.mit.edu	37	chr4	119115790	119115790	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcatctctgtacctgtgccCtctctcgatgaccttcagca	8	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119115790	G	G	119115790	1	3	54	0	1	0	0	0	0	0	0	0	10352	696	24	4		4	NDST3	4	119115790	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3117934	119115790	72038486	1343	57937											
SEC24D	9871	broad.mit.edu	37	chr4	119659576	119659576	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggacatgagttttagctcaGacactgatctcttcaaataa	7	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119659576	A	A	119659576	1	1	54	0	1	0	0	0	0	0	0	0	14110	957	33	4		4	SEC24D	4	119659576	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	543786	119659576	71494700	1344	57938											
MYOZ2	51778	broad.mit.edu	37	chr4	120085450	120085450	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatcaatctccctgggaacAagccattagcaatgatccgg	8	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120085450	G	G	120085450	3	3	54	1	0	0	0	0	1	0	0	0	10190	130	5	5	475	5	MYOZ2	4	120085450	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	425874	120085450	71068826	1345	57939											
MYOZ2	51778	broad.mit.edu	37	chr4	120094540	120094540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattggaaacgtttgcttcaCtaactttgacttaaacttga	6	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120094540	A	A	120094540	1	1	54	0	1	0	0	0	0	0	0	0	10190	580	20	3		3	MYOZ2	4	120094540	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9090	120094540	71059736	1346	57940											
MAD2L1	4085	broad.mit.edu	37	chr4	120982124	120982124	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagctttctgagacttttctCtgggtgcactgtcaaaaaaa	8	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120982124	A	A	120982124	3	1	54	1	0	0	0	0	1	0	0	0	9236	913	32	3	275	3	MAD2L1	4	120982124	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	887584	120982124	70172152	1347	57941											
QRFPR	84109	broad.mit.edu	37	chr4	122251665	122251665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaccatcataatgacagCtcgtttcttcttcctaaacc	4	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122251665	A	A	122251665	3	1	54	1	0	0	0	0	1	0	0	0	12986	797	28	3	492	3	QRFPR	4	122251665	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1269541	122251665	68902611	1348	57942											
TRPC3	7222	broad.mit.edu	37	chr4	122828402	122828402	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatttttcctttgcttcctCtagattggttagaatttctc	5	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122828402	G	G	122828402	1	3	54	0	1	0	0	0	0	0	0	0	16704	928	32	4		4	TRPC3	4	122828402	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	576737	122828402	68325874	1349	57943											
FAT4	79633	broad.mit.edu	37	chr4	126241863	126241863	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagtctattgttgagaacAttcccatcggtacatctgtc	7	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126241863	G	G	126241863	3	3	54	1	0	0	0	0	1	0	0	0	5749	217	8	5	4299	5	FAT4	4	126241863	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3413461	126241863	64912413	1350	57944											
HSPA4L	22824	broad.mit.edu	37	chr4	128751910	128751910	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaacaaactaagtctcactCaagatcctgtggtaaaagtt	7	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128751910	T	T	128751910	4	4	54	1	0	0	0	0	0	1	0	0	7482	827	29	4	2354	4	HSPA4L	4	128751910	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2510047	128751910	62402366	1351	57945											
PCDH18	54510	broad.mit.edu	37	chr4	138450956	138450956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtgccatttatggtagGcaccaatgtgatgtcccctt	10	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138450956	T	T	138450956	3	4	54	1	0	0	0	0	1	0	0	0	11607	1203	42	3	1136	3	PCDH18	4	138450956	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9699046	138450956	52703320	1352	57946											
IL15	3600	broad.mit.edu	37	chr4	142640524	142640524	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactttaccctagattgtAttgtaggaggcattgtggat	10	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142640524	C	C	142640524	1	2	54	0	1	0	0	0	0	0	0	0	7701	464	16	5		5	IL15	4	142640524	5'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4189568	142640524	48513752	1353	57947											
INPP4B	8821	broad.mit.edu	37	chr4	142990443	142990443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgaaaccaatgagaaCaaacacacaacataccagaa	4	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142990443	A	A	142990443	1	1	54	0	1	0	0	0	0	0	0	0	7823	493	17	3		3	INPP4B	4	142990443	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	349919	142990443	48163833	1354	57948											
INPP4B	8821	broad.mit.edu	37	chr4	143008482	143008482	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaaagcaggaaatgacacTggttgctcagatttctgcat	10	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143008482	A	A	143008482	1	1	54	0	1	0	0	0	0	0	0	0	7823	1595	55	5		5	INPP4B	4	143008482	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	18039	143008482	48145794	1355	57949											
INPP4B	8821	broad.mit.edu	37	chr4	143066850	143066850	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gataaatagccttccatcatCcaagccagagcagtggaaaa	8	10	1	1	rs148393438	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143066850	A	A	143066850	1	1	54	0	1	0	0	0	0	0	0	0	7823	870	30	3		3	INPP4B	4	143066850	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	58368	143066850	48087426	1356	57950											
INPP4B	8821	broad.mit.edu	37	chr4	143709964	143709964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaattcattccttttatGgctgagtagtattccattgt	6	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143709964	T	T	143709964	1	4	54	0	1	0	0	0	0	0	0	0	7823	1363	47	2		2	INPP4B	4	143709964	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	643114	143709964	47444312	1357	57951											
GYPA	2993	broad.mit.edu	37	chr4	144961218	144961218	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcctctgaaatctaggccGaggcccccaaacctcaactc	6	17	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144961218	T	T	144961218	1	4	54	0	1	0	0	0	0	0	0	0	6973	1073	37	3		3	GYPA	4	144961218	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1251254	144961218	46193058	1358	57952											
ABCE1	6059	broad.mit.edu	37	chr4	146042355	146042355	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacgacatttatcagaatgCttgctggaagacttaaacct	7	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146042355	T	T	146042355	3	4	54	1	0	0	0	0	1	0	0	0	64	797	28	4	1216	4	ABCE1	4	146042355	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1081137	146042355	45111921	1359	57953											
ZNF827	152485	broad.mit.edu	37	chr4	146831103	146831103	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actcggagattacagttatcGaaacacggatgtccaggaca	10	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146831103	C	C	146831103	1	2	54	0	1	0	0	0	0	0	0	0	18309	1073	37	4		4	ZNF827	4	146831103	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	788748	146831103	44323173	1360	57954											
POU4F2	5458	broad.mit.edu	37	chr4	147561327	147561327	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagcacctgagtcccggGctggccctgggcgctatggc	16	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147561327	A	A	147561327	2	1	54	1	0	0	0	0	0	0	0	1	12375	1190	42	4		4	POU4F2	4	147561327	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	730224	147561327	43592949	1361	57955											
ARHGAP10	79658	broad.mit.edu	37	chr4	148802929	148802929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctccagtatagaatgGctgagtgtgtatatacttat	9	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148802929	T	T	148802929	1	4	54	0	1	0	0	0	0	0	0	0	864	1218	42	3		3	ARHGAP10	4	148802929	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1241602	148802929	42351347	1362	57956											
ARHGAP10	79658	broad.mit.edu	37	chr4	148958480	148958480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtacttctaagtcttgGgtagggaggaagaggctgtg	16	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148958480	T	T	148958480	1	4	54	0	1	0	0	0	0	0	0	0	864	1247	43	2		2	ARHGAP10	4	148958480	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	155551	148958480	42195796	1363	57957											
DCHS2	54798	broad.mit.edu	37	chr4	155287496	155287496	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcctggctgggtctcatcaCtgatgctcgtcacataggtt	11	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155287496	G	G	155287496	3	3	54	1	0	0	0	0	1	0	0	0	4321	565	20	4	8370	4	DCHS2	4	155287496	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6329016	155287496	35866780	1364	57958											
DCHS2	54798	broad.mit.edu	37	chr4	155374483	155374483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgaaatctatttaaggGggtgggggtggtgggcaaag	19	2	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155374483	T	T	155374483	1	4	54	0	1	0	0	0	0	0	0	0	4321	1247	43	2		2	DCHS2	4	155374483	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	86987	155374483	35779793	1365	57959											
DCHS2	54798	broad.mit.edu	37	chr4	155410794	155410794	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagcgcagccaggcgtgatCactgcctgcctcgtcggcat	13	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155410794	A	A	155410794	3	1	54	1	0	0	0	0	1	0	0	0	4321	826	29	3	9370	3	DCHS2	4	155410794	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	36311	155410794	35743482	1366	57960											
FGA	2243	broad.mit.edu	37	chr4	155505595	155505595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcagagcatcacccgcaGtgccttcataggaggagact	10	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155505595	T	T	155505595	3	4	54	1	0	0	0	0	1	0	0	0	5887	1029	36	3	322	3	FGA	4	155505595	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	94801	155505595	35648681	1367	57961											
GLRB	2743	broad.mit.edu	37	chr4	157999241	157999241	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggtggaagaagcctattCtaaggaaaagtcttcaaaga	12	5	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157999241	A	A	157999241	3	1	54	1	0	0	0	0	1	0	0	0	6522	913	32	3	67	3	GLRB	4	157999241	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2493646	157999241	33155035	1368	57962											
GRIA2	2891	broad.mit.edu	37	chr4	158233871	158233871	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctggattctgctgctgaAaagaaatggcaagtgactgc	13	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158233871	G	G	158233871	2	3	54	1	0	0	0	0	0	0	0	1	6834	11	1	5		5	GRIA2	4	158233871	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	234630	158233871	32920405	1369	57963											
GRIA2	2891	broad.mit.edu	37	chr4	158282448	158282449	+	Intron	DNP	CC	AA	AA													tcttcctctacttctctttcCctctctttctccatatctca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	158282449	AA	AA	158282448	1	1	54	0	1	0	0	0	0	0	0	0	6834	638	22	2		2	GRIA2	4	158282448	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	48577	158282448	32871828	1370	57964											
GRIA2	2891	broad.mit.edu	37	chr4	158284152	158284152	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagaattttgcaacttatAaggaaggttacaacgtatat	7	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158284152	T	T	158284152	4	4	54	1	0	0	0	0	0	1	0	0	6834	363	13	5	2785	5	GRIA2	4	158284152	Nonsense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1704	158284152	32870124	1371	57965											
FNIP2	57600	broad.mit.edu	37	chr4	159780351	159780351	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatttccaggacttcttcTtttctcattttcccctgttt	5	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159780351	G	G	159780351	3	3	54	1	0	0	0	0	1	0	0	0	6034	1609	56	5	1034	5	FNIP2	4	159780351	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1496199	159780351	31373925	1372	57966											
C4orf45	152940	broad.mit.edu	37	chr4	159969377	159969377	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaccgttttgtgtaagcaCaaaagggggtggggtaggag	17	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159969377	G	G	159969377	1	3	54	0	1	0	0	0	0	0	0	0	2296	493	17	4		4	C4orf45	4	159969377	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	189026	159969377	31184899	1373	57967											
FSTL5	56884	broad.mit.edu	37	chr4	163032428	163032429	+	Missense_Mutation	DNP	GT	AA	AA													gaatattgactgtaccttatGtcgcaatctcattagaggct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	163032429	AA	AA	163032428	3	1	54	1	0	0	0	0	1	0	0	0	6140	1377	48	4	2482	4	FSTL5	4	163032428	Missense_Mutation	DNP	GT	TCGA-17-Z022-01A-01W-0746-08	3063051	163032428	28121848	1374	57968											
MARCH1	55016	broad.mit.edu	37	chr4	164449808	164449808	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggagaaaggaggagctgaAgggagtaaataattcaagat	14	2	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164449808	T	T	164449808	1	4	54	0	1	0	0	0	0	0	0	0	9390	87	3	5		5	MARCH1	4	164449808	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1417380	164449808	26704468	1375	57969											
MARCH1	55016	broad.mit.edu	37	chr4	164458007	164458007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaatcagtttcccctgCccacaccatccttcaatatg	4	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164458007	T	T	164458007	1	4	54	0	1	0	0	0	0	0	0	0	9390	754	26	4		4	MARCH1	4	164458007	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8199	164458007	26696269	1376	57970											
MARCH1	55016	broad.mit.edu	37	chr4	164534585	164534585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttggcatcttggttaagGtaatacatggttgatatctt	9	4	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164534585	A	A	164534585	1	1	54	0	1	0	0	0	0	0	0	0	9390	1256	44	4		4	MARCH1	4	164534585	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	76578	164534585	26619691	1377	57971											
MARCH1	55016	broad.mit.edu	37	chr4	164852480	164852480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattggtgctgtaattgaatGcatgtatctccccaaaattc	7	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164852480	T	T	164852480	1	4	54	0	1	0	0	0	0	0	0	0	9390	1334	46	3		3	MARCH1	4	164852480	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	317895	164852480	26301796	1378	57972											
CPE	1363	broad.mit.edu	37	chr4	166403611	166403611	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaaggaactgaacatTaagtgatttttgcctgaaga	8	4	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166403611	G	G	166403611	1	3	54	0	1	0	0	0	0	0	0	0	3831	1769	61	5		5	CPE	4	166403611	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1551131	166403611	24750665	1379	57973											
SPOCK3	50859	broad.mit.edu	37	chr4	167833963	167833963	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacatttatattagctcattCctctcctaaactgccattcc	2	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167833963	G	G	167833963	1	3	54	0	1	0	0	0	0	0	0	0	15199	870	30	4		4	SPOCK3	4	167833963	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1430352	167833963	23320313	1380	57974											
ANXA10	11199	broad.mit.edu	37	chr4	169049336	169049336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagtctgattatttctaCcatcttttattgtgattatt	6	5	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169049336	A	A	169049336	1	1	54	0	1	0	0	0	0	0	0	0	715	522	18	3		3	ANXA10	4	169049336	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1215373	169049336	22104940	1381	57975											
DDX60	55601	broad.mit.edu	37	chr4	169195303	169195303	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaaaacaaagacagtattTatagacttccaatacgattt	4	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169195303	A	A	169195303	1	1	54	0	1	0	0	0	0	0	0	0	4411	1769	61	5		5	DDX60	4	169195303	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	145967	169195303	21958973	1382	57976											
DDX60	55601	broad.mit.edu	37	chr4	169206434	169206434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcattatgtattacaaaCacatactacatgtaatgtac	3	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169206434	A	A	169206434	1	1	54	0	1	0	0	0	0	0	0	0	4411	493	17	3		3	DDX60	4	169206434	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11131	169206434	21947842	1383	57977											
GALNTL6	442117	broad.mit.edu	37	chr4	172912767	172912768	+	Intron	DNP	GG	TT	TT													cttcaaagcccaaaggcaaaGgaaagaatacttgagaaatt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	172912768	TT	TT	172912767	1	4	54	0	1	0	0	0	0	0	0	0	6287	1015	35	2		2	GALNTL6	4	172912767	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	3706333	172912767	18241509	1384	57978											
GALNTL6	442117	broad.mit.edu	37	chr4	173508883	173508883	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgcctcctcccagaagctTtttgtgaaccatcaccaccc	5	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173508883	A	A	173508883	1	1	54	0	1	0	0	0	0	0	0	0	6287	1856	64	5		5	GALNTL6	4	173508883	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	596116	173508883	17645393	1385	57979											
GALNTL6	442117	broad.mit.edu	37	chr4	173779581	173779581	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaggagttattttcaaTagggaagtcagaaattcttc	10	4	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173779581	A	A	173779581	1	1	54	0	1	0	0	0	0	0	0	0	6287	1421	49	5		5	GALNTL6	4	173779581	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	270698	173779581	17374695	1386	57980											
GALNT7	51809	broad.mit.edu	37	chr4	174239522	174239522	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagttaagtttctttcttttCaaatgcacatcagcagggaa	8	7	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174239522	G	G	174239522	1	3	54	0	1	0	0	0	0	0	0	0	6280	841	29	4		4	GALNT7	4	174239522	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	459941	174239522	16914754	1387	57981											
SPATA4	132851	broad.mit.edu	37	chr4	177114567	177114567	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcacactttaaaacaaacaTcttaacagttaaaagtgtaa	5	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177114567	A	A	177114567	1	1	54	0	1	0	0	0	0	0	0	0	15126	1450	50	5		5	SPATA4	4	177114567	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2875045	177114567	14039709	1388	57982											
ODZ3	55714	broad.mit.edu	37	chr4	183112446	183112446	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcttgtctactgccaactCatcctttgagctattcagag	6	11	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183112446	A	A	183112446	1	1	54	0	1	0	0	0	0	0	0	0	10931	841	29	3		3	ODZ3	4	183112446	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5997879	183112446	8041830	1389	57983											
ODZ3	55714	broad.mit.edu	37	chr4	183650187	183650187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaatcagccctattgtcGgggactgccggatcctcagg	12	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183650187	T	T	183650187	3	4	54	1	0	0	0	0	1	0	0	0	10931	1116	39	1	2488	1	ODZ3	4	183650187	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	537741	183650187	7504089	1390	57984											
DCTD	1635	broad.mit.edu	37	chr4	183836119	183836119	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttattctctgctgtccttctCcaaggcaacacgtcatcact	5	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183836119	G	G	183836119	3	3	54	1	0	0	0	0	1	0	0	0	4338	856	30	4	351	4	DCTD	4	183836119	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	185932	183836119	7318157	1391	57985											
CYP4V2	285440	broad.mit.edu	37	chr4	187120038	187120038	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgattgccttcatcaaggcCaggtactaaagaagtgctca	9	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187120038	G	G	187120038	1	3	54	0	1	0	0	0	0	0	0	0	4225	609	21	4		4	CYP4V2	4	187120038	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3283919	187120038	4034238	1392	57986											
TRIML1	339976	broad.mit.edu	37	chr4	189063402	189063402	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgttttgGcaggaagaaacaaagacttg	15	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189063402	C	C	189063402	1	2	54	0	1	0	0	0	0	0	0	0	16675	1218	42	4		4	TRIML1	4	189063402	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1943364	189063402	2090874	1393	57987											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903817	190903817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggaggaaggccttgcgcCtgaacgttgctgtaaactgc	14	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190903817	A	A	190903817	3	1	54	1	0	0	0	0	1	0	0	0	16885	681	24	2	141	2	TUBB4Q	4	190903817	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1840415	190903817	250459	1394	57988											
C5orf55	116349	broad.mit.edu	37	chr5	442814	442819	+	In_Frame_Del	DEL	CCTTCT	-	-													gacagacgtttgattcccaaCcttctccgctttggtttctt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	442819	-	-	442814	7	5	54	1	0	1	0	1	0	0	0	0	2334	507	18	0	239	0	C5orf55	5	442814	In_Frame_Del	DEL	CCTTCT	TCGA-17-Z022-01A-01W-0746-08		442814	180472446	1395	57989											
TRIP13	9319	broad.mit.edu	37	chr5	900483	900483	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatttatactttcctgtaatCagaatcatagtcttgcctgg	6	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	900483	G	G	900483	1	3	54	0	1	0	0	0	0	0	0	0	16682	841	29	4		4	TRIP13	5	900483	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	457669	900483	180014777	1396	57990											
ADAMTS16	170690	broad.mit.edu	37	chr5	5242371	5242371	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccactgcgtacattgcacTggcctttcttgaatcctaat	7	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5242371	A	A	5242371	1	1	54	0	1	0	0	0	0	0	0	0	261	1595	55	5		5	ADAMTS16	5	5242371	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	4341888	5242371	175672889	1397	57991											
KIAA0947	23379	broad.mit.edu	37	chr5	5457980	5457980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttagccaattttgttagGgggtaacatgaggtttttaa	10	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5457980	T	T	5457980	1	4	54	0	1	0	0	0	0	0	0	0	8272	1247	43	2		2	KIAA0947	5	5457980	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	215609	5457980	175457280	1398	57992											
ADCY2	108	broad.mit.edu	37	chr5	7690798	7690798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcctccttccccaccttGtccaggagcggcttctgctc	8	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7690798	T	T	7690798	1	4	54	0	1	0	0	0	0	0	0	0	294	1392	48	3		3	ADCY2	5	7690798	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2232818	7690798	173224462	1399	57993											
ADCY2	108	broad.mit.edu	37	chr5	7707973	7707973	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtatcattgtaaagagtCtatgatgaaaagggaggagg	13	3	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7707973	A	A	7707973	1	1	54	0	1	0	0	0	0	0	0	0	294	928	32	3		3	ADCY2	5	7707973	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17175	7707973	173207287	1400	57994											
ADCY2	108	broad.mit.edu	37	chr5	7743815	7743815	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatctcctttggggctgcgTttctcttgctggccttcatc	10	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7743815	C	C	7743815	3	2	54	1	0	0	0	0	1	0	0	0	294	1725	60	5	1964	5	ADCY2	5	7743815	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	35842	7743815	173171445	1401	57995											
MTRR	4552	broad.mit.edu	37	chr5	7893138	7893138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcataagaaaatttatGctgttcttgaattttaaaat	5	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7893138	T	T	7893138	1	4	54	0	1	0	0	0	0	0	0	0	10055	1334	46	3		3	MTRR	5	7893138	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	149323	7893138	173022122	1402	57996											
MTRR	4552	broad.mit.edu	37	chr5	7899049	7899049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagatttaatgggctcacGgtttaggctgtagaggaaac	13	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7899049	T	T	7899049	1	4	54	0	1	0	0	0	0	0	0	0	10055	1131	39	1		1	MTRR	5	7899049	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5911	7899049	173016211	1403	57997											
SEMA5A	9037	broad.mit.edu	37	chr5	9280606	9280606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcctgaccccgtgttaGtgcctatgtccctcaacagg	9	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9280606	T	T	9280606	1	4	54	0	1	0	0	0	0	0	0	0	14150	1044	36	3		3	SEMA5A	5	9280606	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1381557	9280606	171634654	1404	57998											
SEMA5A	9037	broad.mit.edu	37	chr5	9318535	9318535	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagaggtagtttctgcaAaatacaaaaacagagcagtt	9	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9318535	G	G	9318535	1	3	54	0	1	0	0	0	0	0	0	0	14150	29	1	5		5	SEMA5A	5	9318535	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	37929	9318535	171596725	1405	57999											
SEMA5A	9037	broad.mit.edu	37	chr5	9408197	9408197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacaccacaccacaatcacTaccacaatcatcaccaacac	0	20	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9408197	C	C	9408197	1	2	54	0	1	0	0	0	0	0	0	0	14150	1537	53	5		5	SEMA5A	5	9408197	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	89662	9408197	171507063	1406	58000											
SEMA5A	9037	broad.mit.edu	37	chr5	9444011	9444011	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaagcttgaggtgatgaaGaaattataggatgaaggcag	13	3	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9444011	A	A	9444011	1	1	54	0	1	0	0	0	0	0	0	0	14150	957	33	4		4	SEMA5A	5	9444011	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	35814	9444011	171471249	1407	58001											
DAP	1611	broad.mit.edu	37	chr5	10689800	10689800	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgagccagggactggtgtCctttgtgctgcatcctatac	12	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10689800	A	A	10689800	1	1	54	0	1	0	0	0	0	0	0	0	4266	870	30	3		3	DAP	5	10689800	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1245789	10689800	170225460	1408	58002											
CTNND2	1501	broad.mit.edu	37	chr5	11002389	11002389	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgctccagaaaacatgcaGagcatgtcaataagagagtg	12	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11002389	T	T	11002389	1	4	54	0	1	0	0	0	0	0	0	0	4054	957	33	3		3	CTNND2	5	11002389	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	312589	11002389	169912871	1409	58003											
CTNND2	1501	broad.mit.edu	37	chr5	11009693	11009693	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtagacttacattaaacTtactgagtttactagctcct	6	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11009693	C	C	11009693	1	2	54	0	1	0	0	0	0	0	0	0	4054	1624	56	5		5	CTNND2	5	11009693	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	7304	11009693	169905567	1410	58004											
CTNND2	1501	broad.mit.edu	37	chr5	11199786	11199786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccttatctgaaagagcaaAggacaccacttttgctttac	6	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11199786	G	G	11199786	1	3	54	0	1	0	0	0	0	0	0	0	4054	87	3	5		5	CTNND2	5	11199786	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	190093	11199786	169715474	1411	58005											
CTNND2	1501	broad.mit.edu	37	chr5	11217554	11217554	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttaatatttatcactGgccttgttctgataaagagt	7	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11217554	C	C	11217554	1	2	54	0	1	0	0	0	0	0	0	0	4054	1363	47	4		4	CTNND2	5	11217554	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	17768	11217554	169697706	1412	58006											
CTNND2	1501	broad.mit.edu	37	chr5	11276535	11276535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtttcctcctacttcccAggccccttcttgatctcttt	5	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11276535	T	T	11276535	1	4	54	0	1	0	0	0	0	0	0	0	4054	203	7	5		5	CTNND2	5	11276535	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	58981	11276535	169638725	1413	58007											
CTNND2	1501	broad.mit.edu	37	chr5	11277950	11277950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcatccagcctgctttaGgcttttatgctgtctgactt	8	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11277950	T	T	11277950	1	4	54	0	1	0	0	0	0	0	0	0	4054	1015	35	2		2	CTNND2	5	11277950	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1415	11277950	169637310	1414	58008											
CTNND2	1501	broad.mit.edu	37	chr5	11598258	11598258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaacagattcagagagGttaaataatttgtccaaaat	9	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11598258	T	T	11598258	1	4	54	0	1	0	0	0	0	0	0	0	4054	1276	44	3		3	CTNND2	5	11598258	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	320308	11598258	169317002	1415	58009											
CTNND2	1501	broad.mit.edu	37	chr5	11737719	11737719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagtcaccctgctctatGcccacacatgcatgagcagt	8	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11737719	T	T	11737719	1	4	54	0	1	0	0	0	0	0	0	0	4054	1334	46	3		3	CTNND2	5	11737719	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	139461	11737719	169177541	1416	58010											
CTNND2	1501	broad.mit.edu	37	chr5	11743704	11743704	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgagccatagtcagaacaTgcaaccacaagggcatcagc	9	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11743704	G	G	11743704	1	3	54	0	1	0	0	0	0	0	0	0	4054	1479	51	5		5	CTNND2	5	11743704	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5985	11743704	169171556	1417	58011											
CTNND2	1501	broad.mit.edu	37	chr5	11842045	11842045	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatagtacctctcatccctaGaggtgaaggtctgctctctt	8	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11842045	C	C	11842045	1	2	54	0	1	0	0	0	0	0	0	0	4054	957	33	4		4	CTNND2	5	11842045	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	98341	11842045	169073215	1418	58012											
DNAH5	1767	broad.mit.edu	37	chr5	13735346	13735346	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgctcctcgtacagcccTcgggcagcatacttataaac	8	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13735346	A	A	13735346	2	1	54	1	0	0	0	0	0	0	0	1	4644	1538	54	5		5	DNAH5	5	13735346	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1893301	13735346	167179914	1419	58013											
DNAH5	1767	broad.mit.edu	37	chr5	13811694	13811694	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataagagagaaaatatagtaCtctctgtgcagcatggctaa	9	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13811694	G	G	13811694	1	3	54	0	1	0	0	0	0	0	0	0	4644	580	20	4		4	DNAH5	5	13811694	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	76348	13811694	167103566	1420	58014											
DNAH5	1767	broad.mit.edu	37	chr5	13845373	13845373	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtacacattttgcacagtCtggaaaatcttgtatatact	6	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13845373	A	A	13845373	1	1	54	0	1	0	0	0	0	0	0	0	4644	928	32	3		3	DNAH5	5	13845373	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	33679	13845373	167069887	1421	58015											
TRIO	7204	broad.mit.edu	37	chr5	14203979	14203979	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacacagcaggaatagcgtgTaaaattgaagaaggaaagtg	12	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14203979	G	G	14203979	1	3	54	0	1	0	0	0	0	0	0	0	16677	1653	57	5		5	TRIO	5	14203979	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	358606	14203979	166711281	1422	58016											
ANKH	56172	broad.mit.edu	37	chr5	14767215	14767215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgggaagaatggctggGgggtggagagagagcaacat	21	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14767215	T	T	14767215	1	4	54	0	1	0	0	0	0	0	0	0	627	1247	43	2		2	ANKH	5	14767215	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	563236	14767215	166148045	1423	58017											
ANKH	56172	broad.mit.edu	37	chr5	14809820	14809820	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctgaaaatgttcaattctCacctttctgcatttcccaga	4	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14809820	A	A	14809820	1	1	54	0	1	0	0	0	0	0	0	0	627	841	29	3		3	ANKH	5	14809820	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42605	14809820	166105440	1424	58018											
FBXL7	23194	broad.mit.edu	37	chr5	15552717	15552717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttttctcctctgtatctGgccttcaggccctgggctat	8	12	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15552717	T	T	15552717	1	4	54	0	1	0	0	0	0	0	0	0	5781	1363	47	2		2	FBXL7	5	15552717	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	742897	15552717	165362543	1425	58019											
FBXL7	23194	broad.mit.edu	37	chr5	15552904	15552904	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accataatgatcaaaacaatCaatcctggccaggtacgatg	7	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15552904	G	G	15552904	1	3	54	0	1	0	0	0	0	0	0	0	5781	841	29	4		4	FBXL7	5	15552904	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	187	15552904	165362356	1426	58020											
FBXL7	23194	broad.mit.edu	37	chr5	15596986	15596986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgccccttcccacatacCtcgccctgtgcatctcttca	4	20	2	0	rs80233469	byFrequency;by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15596986	A	A	15596986	1	1	54	0	1	0	0	0	0	0	0	0	5781	696	24	2		2	FBXL7	5	15596986	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	44082	15596986	165318274	1427	58021											
FBXL7	23194	broad.mit.edu	37	chr5	15628622	15628622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatttactgtggaaatcaGtttagggctgaattttgaga	11	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15628622	A	A	15628622	1	1	54	0	1	0	0	0	0	0	0	0	5781	1044	36	4		4	FBXL7	5	15628622	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31636	15628622	165286638	1428	58022											
FBXL7	23194	broad.mit.edu	37	chr5	15664327	15664327	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtattataagattttacctTatagcatgagaaactcacag	6	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15664327	A	A	15664327	1	1	54	0	1	0	0	0	0	0	0	0	5781	1769	61	5		5	FBXL7	5	15664327	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	35705	15664327	165250933	1429	58023											
FBXL7	23194	broad.mit.edu	37	chr5	15693099	15693099	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctctgaaccagttggagtAatgctgcttaaacaaaacaa	8	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15693099	G	G	15693099	1	3	54	0	1	0	0	0	0	0	0	0	5781	377	13	5		5	FBXL7	5	15693099	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	28772	15693099	165222161	1430	58024											
FBXL7	23194	broad.mit.edu	37	chr5	15725722	15725722	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgagaagaatgtgtatgcTgttaatgttgggaagattgt	13	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15725722	A	A	15725722	1	1	54	0	1	0	0	0	0	0	0	0	5781	1595	55	5		5	FBXL7	5	15725722	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	32623	15725722	165189538	1431	58025											
FBXL7	23194	broad.mit.edu	37	chr5	15789278	15789278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatggcacctctttaaaaaGgtgacatctctgccagtgct	8	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15789278	T	T	15789278	1	4	54	0	1	0	0	0	0	0	0	0	5781	1015	35	2		2	FBXL7	5	15789278	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	63556	15789278	165125982	1432	58026											
FBXL7	23194	broad.mit.edu	37	chr5	15821022	15821022	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgtccttgtcatctaaaGagcttttagaaaatacagat	6	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15821022	T	T	15821022	1	4	54	0	1	0	0	0	0	0	0	0	5781	957	33	3		3	FBXL7	5	15821022	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31744	15821022	165094238	1433	58027											
FBXL7	23194	broad.mit.edu	37	chr5	15847350	15847350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacagttcaacatggctgaGgaggcctcaggaaacttaca	10	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15847350	A	A	15847350	1	1	54	0	1	0	0	0	0	0	0	0	5781	1015	35	4		4	FBXL7	5	15847350	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	26328	15847350	165067910	1434	58028											
MARCH11	441061	broad.mit.edu	37	chr5	16095727	16095727	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcagcatgcaacgtctgtCtcctctttattcaactgatc	5	14	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16095727	A	A	16095727	1	1	54	0	1	0	0	0	0	0	0	0	9392	928	32	3		3	MARCH11	5	16095727	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	248377	16095727	164819533	1435	58029											
MARCH11	441061	broad.mit.edu	37	chr5	16178022	16178022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctcagtgtgaatatctGtgtctgtgtctctattttaa	8	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16178022	T	T	16178022	1	4	54	0	1	0	0	0	0	0	0	0	9392	1392	48	3		3	MARCH11	5	16178022	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	82295	16178022	164737238	1436	58030											
CDH12	1010	broad.mit.edu	37	chr5	21783589	21783589	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgtccccatcactcttcCaatctatgaagtacctgtat	5	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21783589	G	G	21783589	3	3	54	1	0	0	0	0	1	0	0	0	3128	595	21	4	1133	4	CDH12	5	21783589	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5605567	21783589	159131671	1437	58031											
CDH12	1010	broad.mit.edu	37	chr5	21842303	21842303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtggattgtcattgacatCggtgagagtgatgttgacta	14	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21842303	A	A	21842303	3	1	54	1	0	0	0	0	1	0	0	0	3128	884	31	3	1635	3	CDH12	5	21842303	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	58714	21842303	159072957	1438	58032											
CDH12	1010	broad.mit.edu	37	chr5	21842443	21842443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctaataacaccttaaGggataaaagcaataatgtaa	6	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21842443	T	T	21842443	1	4	54	0	1	0	0	0	0	0	0	0	3128	1015	35	2		2	CDH12	5	21842443	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	140	21842443	159072817	1439	58033											
CDH12	1010	broad.mit.edu	37	chr5	22089289	22089289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggggtaaaagattccGcaaaatgagttcatccaatt	10	7	1	2	rs146856457	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22089289	T	T	22089289	1	4	54	0	1	0	0	0	0	0	0	0	3128	1102	38	3		3	CDH12	5	22089289	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	246846	22089289	158825971	1440	58034											
CDH12	1010	broad.mit.edu	37	chr5	22143128	22143128	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgggtattatgttaaatGtctgttttaaaagaaagtag	9	2	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22143128	A	A	22143128	1	1	54	0	1	0	0	0	0	0	0	0	3128	1392	48	4		4	CDH12	5	22143128	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	53839	22143128	158772132	1441	58035											
CDH12	1010	broad.mit.edu	37	chr5	22592921	22592921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactttgggagcggatcacCtgagatcaggtgttcacgac	13	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22592921	A	A	22592921	1	1	54	0	1	0	0	0	0	0	0	0	3128	696	24	2		2	CDH12	5	22592921	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	449793	22592921	158322339	1442	58036											
PRDM9	56979	broad.mit.edu	37	chr5	23523168	23523168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagagatcagaggttacatGggagcagagtggtacaaaga	14	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23523168	T	T	23523168	1	4	54	0	1	0	0	0	0	0	0	0	12569	1363	47	2		2	PRDM9	5	23523168	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	930247	23523168	157392092	1443	58037											
PRDM9	56979	broad.mit.edu	37	chr5	23524340	23524340	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgggggagtggtcagcActagaccatggaggcctaga	18	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23524340	T	T	23524340	1	4	54	0	1	0	0	0	0	0	0	0	12569	174	6	5		5	PRDM9	5	23524340	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1172	23524340	157390920	1444	58038											
CDH10	1008	broad.mit.edu	37	chr5	24488296	24488297	+	Intron	DNP	CG	TT	TT													aagaagatacattagacgtcCgttcaaaacactataaataa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	24488297	TT	TT	24488296	1	4	54	0	1	0	0	0	0	0	0	0	3126	667	23	4		4	CDH10	5	24488296	Intron	DNP	CG	TCGA-17-Z022-01A-01W-0746-08	963956	24488296	156426964	1445	58039											
CDH9	1007	broad.mit.edu	37	chr5	26890029	26890029	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatttatatctagaattctGatgaagacagggatgtggct	10	5	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26890029	A	A	26890029	2	1	54	1	0	0	0	0	0	0	0	1	3147	1280	45	4		4	CDH9	5	26890029	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2401733	26890029	154025231	1446	58040											
CDH9	1007	broad.mit.edu	37	chr5	26903796	26903796	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atccttgtcagtgatgacatCgaacatgtctgcaccatctc	7	12	3	2	rs141440884		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26903796	G	G	26903796	3	3	54	1	0	0	0	0	1	0	0	0	3147	884	31	4	1448	4	CDH9	5	26903796	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13767	26903796	154011464	1447	58041											
CDH9	1007	broad.mit.edu	37	chr5	26916051	26916051	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctttagagaggtagaaaaGaagagttctgtaaatatata	10	2	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26916051	T	T	26916051	1	4	54	0	1	0	0	0	0	0	0	0	3147	957	33	3		3	CDH9	5	26916051	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12255	26916051	153999209	1448	58042											
CDH9	1007	broad.mit.edu	37	chr5	26941621	26941621	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacacagaaaatatgaaccAgactattgcctatcacagtt	6	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26941621	G	G	26941621	1	3	54	0	1	0	0	0	0	0	0	0	3147	203	7	5		5	CDH9	5	26941621	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	25570	26941621	153973639	1449	58043											
CDH6	1004	broad.mit.edu	37	chr5	31316246	31316246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaatgaaggagttgagcGgatgttgtctaaagggaatc	15	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31316246	T	T	31316246	1	4	54	0	1	0	0	0	0	0	0	0	3144	1131	39	1		1	CDH6	5	31316246	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4374625	31316246	149599014	1450	58044											
PDZD2	23037	broad.mit.edu	37	chr5	31725590	31725590	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttaagtaaataaaactatGagtaaatgaatgatccatgt	6	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31725590	C	C	31725590	1	2	54	0	1	0	0	0	0	0	0	0	11795	1305	45	4		4	PDZD2	5	31725590	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	409344	31725590	149189670	1451	58045											
PDZD2	23037	broad.mit.edu	37	chr5	31891703	31891703	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgttgggattacaggcatGagccaccatgcccggccggt	14	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31891703	C	C	31891703	1	2	54	0	1	0	0	0	0	0	0	0	11795	1305	45	4		4	PDZD2	5	31891703	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	166113	31891703	149023557	1452	58046											
NPR3	4883	broad.mit.edu	37	chr5	32758834	32758834	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagatctttcctgctttctCtcgtgggctttcagtgctat	8	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32758834	T	T	32758834	1	4	54	0	1	0	0	0	0	0	0	0	10691	928	32	4		4	NPR3	5	32758834	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	867131	32758834	148156426	1453	58047											
NPR3	4883	broad.mit.edu	37	chr5	32762043	32762043	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctcctaatgctatccttCacctagcttccaatccccca	2	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32762043	T	T	32762043	1	4	54	0	1	0	0	0	0	0	0	0	10691	841	29	4		4	NPR3	5	32762043	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3209	32762043	148153217	1454	58048											
NPR3	4883	broad.mit.edu	37	chr5	32774763	32774763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattgctcatcttattcctGgcatgagtcacttggtgttt	10	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32774763	T	T	32774763	1	4	54	0	1	0	0	0	0	0	0	0	10691	1363	47	2		2	NPR3	5	32774763	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12720	32774763	148140497	1455	58049											
ADAMTS12	81792	broad.mit.edu	37	chr5	33557732	33557732	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgacaaagtgagaccccatCtcaaaaaaaaattaattaga	6	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33557732	A	A	33557732	1	1	54	0	1	0	0	0	0	0	0	0	257	928	32	3		3	ADAMTS12	5	33557732	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	782969	33557732	147357528	1456	58050											
ADAMTS12	81792	broad.mit.edu	37	chr5	33637734	33637734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattcttgtagggaacagtGtcaaattcactgcactgcat	8	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33637734	T	T	33637734	3	4	54	1	0	0	0	0	1	0	0	0	257	1368	48	3	3000	3	ADAMTS12	5	33637734	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	80002	33637734	147277526	1457	58051											
ADAMTS12	81792	broad.mit.edu	37	chr5	33659970	33659970	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatacctccctcccttcgtGatcctacctatcttttcagg	4	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33659970	C	C	33659970	1	2	54	0	1	0	0	0	0	0	0	0	257	1305	45	4		4	ADAMTS12	5	33659970	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22236	33659970	147255290	1458	58052											
ADAMTS12	81792	broad.mit.edu	37	chr5	33661943	33661943	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagtgagaatgtcatgggtTtgaacacctggtaagccttt	11	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33661943	A	A	33661943	1	1	54	0	1	0	0	0	0	0	0	0	257	1856	64	5		5	ADAMTS12	5	33661943	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1973	33661943	147253317	1459	58053											
ADAMTS12	81792	broad.mit.edu	37	chr5	33678844	33678844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaacgaagccaggtgtagGggttggagaaagggtggcag	18	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33678844	T	T	33678844	1	4	54	0	1	0	0	0	0	0	0	0	257	1247	43	2		2	ADAMTS12	5	33678844	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16901	33678844	147236416	1460	58054											
SLC45A2	51151	broad.mit.edu	37	chr5	33964154	33964154	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagctatgttagcatattTagcaaattatcgttcatttt	5	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33964154	G	G	33964154	1	3	54	0	1	0	0	0	0	0	0	0	14755	1769	61	5		5	SLC45A2	5	33964154	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	285310	33964154	146951106	1461	58055											
AGXT2	64902	broad.mit.edu	37	chr5	35044962	35044962	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcagttctgactgtggcaAggctgcctggaggggtgtag	16	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35044962	T	T	35044962	1	4	54	0	1	0	0	0	0	0	0	0	405	87	3	5		5	AGXT2	5	35044962	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1080808	35044962	145870298	1462	58056											
PRLR	5618	broad.mit.edu	37	chr5	35092455	35092455	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcctgcattttcttcccAggaaggcaaacataatggag	8	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35092455	T	T	35092455	1	4	54	0	1	0	0	0	0	0	0	0	12637	203	7	5		5	PRLR	5	35092455	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	47493	35092455	145822805	1463	58057											
SPEF2	79925	broad.mit.edu	37	chr5	35759755	35759755	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaatcccagtagaggacaAcaagagatttactcgaatcc	7	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35759755	G	G	35759755	3	3	54	1	0	0	0	0	1	0	0	0	15153	43	2	5	3673	5	SPEF2	5	35759755	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	667300	35759755	145155505	1464	58058											
SPEF2	79925	broad.mit.edu	37	chr5	35779064	35779064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accctgcctttttacaaaatAgatttggggacaaattgaaa	7	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35779064	T	T	35779064	1	4	54	0	1	0	0	0	0	0	0	0	15153	435	15	5		5	SPEF2	5	35779064	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	19309	35779064	145136196	1465	58059											
SPEF2	79925	broad.mit.edu	37	chr5	35806854	35806854	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaggaatttcctgaacctGaggaaaatgctgcaagagaa	11	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35806854	A	A	35806854	3	1	54	1	0	0	0	0	1	0	0	0	15153	1291	45	4	5215	4	SPEF2	5	35806854	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27790	35806854	145108406	1466	58060											
UGT3A1	133688	broad.mit.edu	37	chr5	35956045	35956045	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaaagcagaaaagtcagatGaaacaccaatgaaatcaagg	9	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35956045	A	A	35956045	1	1	54	0	1	0	0	0	0	0	0	0	17089	1305	45	4		4	UGT3A1	5	35956045	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	149191	35956045	144959215	1467	58061											
UGT3A1	133688	broad.mit.edu	37	chr5	35965558	35965558	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgggaagcaggggccggGcaaaatcaaaggcaaaatca	14	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35965558	T	T	35965558	3	4	54	1	0	0	0	0	1	0	0	0	17089	1203	42	3	896	3	UGT3A1	5	35965558	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9513	35965558	144949702	1468	58062											
UGT3A1	133688	broad.mit.edu	37	chr5	35991143	35991143	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggtccgcaagcccagcCtggaaaatcgcctggataac	11	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35991143	T	T	35991143	1	4	54	0	1	0	0	0	0	0	0	0	17089	696	24	4		4	UGT3A1	5	35991143	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25585	35991143	144924117	1469	58063											
SKP2	6502	broad.mit.edu	37	chr5	36168681	36168681	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctagtgcagtgctctagcTtctgcaaaacttttcaggac	8	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36168681	A	A	36168681	1	1	54	0	1	0	0	0	0	0	0	0	14475	1624	56	5		5	SKP2	5	36168681	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	177538	36168681	144746579	1470	58064											
RANBP3L	202151	broad.mit.edu	37	chr5	36269349	36269349	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actaactgtaccattgtataGcttgttgttttcacgtaaca	6	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36269349	C	C	36269349	1	2	54	0	1	0	0	0	0	0	0	0	13138	986	34	4		4	RANBP3L	5	36269349	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	100668	36269349	144645911	1471	58065											
RANBP3L	202151	broad.mit.edu	37	chr5	36270228	36270228	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaccaacctagtacatcaGatttccaccctgccacttta	4	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36270228	A	A	36270228	1	1	54	0	1	0	0	0	0	0	0	0	13138	957	33	4		4	RANBP3L	5	36270228	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	879	36270228	144645032	1472	58066											
C5orf42	65250	broad.mit.edu	37	chr5	37169220	37169220	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaattacagtttctgcccaCgtcttctgctcaacttcttt	5	12	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37169220	A	A	37169220	2	1	54	1	0	0	0	0	0	0	0	1	2324	523	19	3		3	C5orf42	5	37169220	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	898992	37169220	143746040	1473	58067											
WDR70	55100	broad.mit.edu	37	chr5	37657222	37657222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgaaacttagggccctgGtgttgtaggcatctgaggga	15	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37657222	T	T	37657222	1	4	54	0	1	0	0	0	0	0	0	0	17448	1276	44	3		3	WDR70	5	37657222	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	488002	37657222	143258038	1474	58068											
EGFLAM	133584	broad.mit.edu	37	chr5	38427131	38427131	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttcaccttgaccattcctCagttcagagagtctctgaga	7	12	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38427131	T	T	38427131	4	4	54	1	0	0	0	0	0	1	0	0	5006	827	29	4	1899	4	EGFLAM	5	38427131	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	769909	38427131	142488129	1475	58069											
FYB	2533	broad.mit.edu	37	chr5	39149565	39149565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatttttccctcttgactGgatctttccatcagcctaca	4	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39149565	T	T	39149565	1	4	54	0	1	0	0	0	0	0	0	0	6184	1363	47	2		2	FYB	5	39149565	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	722434	39149565	141765695	1476	58070											
C9	735	broad.mit.edu	37	chr5	39313733	39313733	+	Intron	DEL	T	-	-													ctgttccatagaccacactcTaagtagcaaagttcttgggc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39313733	-	-	39313733	6	5	54	0	1	1	0	1	0	0	0	0	2469	1537	53	0		0	C9	5	39313733	Intron	DEL	T	TCGA-17-Z022-01A-01W-0746-08	164168	39313733	141601527	1477	58071											
DAB2	1601	broad.mit.edu	37	chr5	39376943	39376943	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaacatttctttcacatccTtgatctctttatccccaagt	2	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39376943	A	A	39376943	3	1	54	1	0	0	0	0	1	0	0	0	4251	1609	56	5	378	5	DAB2	5	39376943	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	63210	39376943	141538317	1478	58072											
DAB2	1601	broad.mit.edu	37	chr5	39392565	39392565	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaccagctgccgccattcCctgatgagggtggaaaaaca	11	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39392565	T	T	39392565	3	4	54	1	0	0	0	0	1	0	0	0	4251	637	22	4	2124	4	DAB2	5	39392565	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	15622	39392565	141522695	1479	58073											
DAB2	1601	broad.mit.edu	37	chr5	39415706	39415706	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttatgaaaatgtaaccaAgggtccctacagcttgcttt	7	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39415706	T	T	39415706	1	4	54	0	1	0	0	0	0	0	0	0	4251	87	3	5		5	DAB2	5	39415706	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	23141	39415706	141499554	1480	58074											
HEATR7B2	133558	broad.mit.edu	37	chr5	40999795	40999795	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacctgtgagtttgacagcTgcactcctgatcacctccca	7	15	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40999795	A	A	40999795	2	1	54	1	0	0	0	0	0	0	0	1	7102	1567	55	5		5	HEATR7B2	5	40999795	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1584089	40999795	139915465	1481	58075											
HEATR7B2	133558	broad.mit.edu	37	chr5	41012911	41012911	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatacttacaacatgctgttGtggtttgttttgggtattag	11	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41012911	A	A	41012911	1	1	54	0	1	0	0	0	0	0	0	0	7102	1392	48	4		4	HEATR7B2	5	41012911	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13116	41012911	139902349	1482	58076											
HEATR7B2	133558	broad.mit.edu	37	chr5	41019047	41019047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattttccagaggtggaaGgggcagcagcctccgaatat	13	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41019047	T	T	41019047	3	4	54	1	0	0	0	0	1	0	0	0	7102	1000	35	2	2314	2	HEATR7B2	5	41019047	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6136	41019047	139896213	1483	58077											
HEATR7B2	133558	broad.mit.edu	37	chr5	41055873	41055873	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacagccaatcttaacaaaGtcaagattcccactcgaatg	6	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41055873	C	C	41055873	3	2	54	1	0	0	0	0	1	0	0	0	7102	1029	36	4	3885	4	HEATR7B2	5	41055873	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	36826	41055873	139859387	1484	58078											
C6	729	broad.mit.edu	37	chr5	41181977	41181977	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctaagctgagacttaaCagggtgataaacaatgaagg	10	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41181977	T	T	41181977	1	4	54	0	1	0	0	0	0	0	0	0	2338	493	17	4		4	C6	5	41181977	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	126104	41181977	139733283	1485	58079											
C6	729	broad.mit.edu	37	chr5	41225882	41225882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaatggaacagaacagagCcctcagaaataatgccacat	7	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41225882	A	A	41225882	1	1	54	0	1	0	0	0	0	0	0	0	2338	754	26	3		3	C6	5	41225882	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43905	41225882	139689378	1486	58080											
PLCXD3	345557	broad.mit.edu	37	chr5	41318565	41318565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggggatgaagttaaggCgtatttttattagtttactt	13	2	0	1	rs114537890	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41318565	A	A	41318565	1	1	54	0	1	0	0	0	0	0	0	0	12138	783	27	3		3	PLCXD3	5	41318565	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92683	41318565	139596695	1487	58081											
PLCXD3	345557	broad.mit.edu	37	chr5	41383193	41383193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaagaaggcagtaccatgCtgacatatttaacttcattc	7	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41383193	A	A	41383193	1	1	54	0	1	0	0	0	0	0	0	0	12138	812	28	3		3	PLCXD3	5	41383193	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	64628	41383193	139532067	1488	58082											
GHR	2690	broad.mit.edu	37	chr5	42453771	42453771	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaactgtgactctgcctctCatgcaggcctgaatctgggg	13	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42453771	T	T	42453771	1	4	54	0	1	0	0	0	0	0	0	0	6435	841	29	4		4	GHR	5	42453771	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1070578	42453771	138461489	1489	58083											
GHR	2690	broad.mit.edu	37	chr5	42468169	42468169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctaatatgatgcggggGttttcagcttcctcacgtat	9	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42468169	T	T	42468169	1	4	54	0	1	0	0	0	0	0	0	0	6435	1276	44	3		3	GHR	5	42468169	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14398	42468169	138447091	1490	58084											
GHR	2690	broad.mit.edu	37	chr5	42653005	42653005	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctacagtgcctctttacatCctcctgatgtagaaatcttc	6	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42653005	A	A	42653005	1	1	54	0	1	0	0	0	0	0	0	0	6435	870	30	3		3	GHR	5	42653005	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	184836	42653005	138262255	1491	58085											
C5orf39	389289	broad.mit.edu	37	chr5	43042823	43042823	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcaaaaccagcaactcaGtggagagaaccccgcagcca	10	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43042823	T	T	43042823	1	4	54	0	1	0	0	0	0	0	0	0	2320	1044	36	3		3	C5orf39	5	43042823	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	389818	43042823	137872437	1492	58086											
NNT	23530	broad.mit.edu	37	chr5	43628500	43628500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttattccaggtatgccattAagtaaacggttattttaaaa	6	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43628500	G	G	43628500	1	3	54	0	1	0	0	0	0	0	0	0	10605	377	13	5		5	NNT	5	43628500	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	585677	43628500	137286760	1493	58087											
NNT	23530	broad.mit.edu	37	chr5	43666814	43666814	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgcagatggtagcccaggGacgggggtggggggtcgcac	20	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43666814	T	T	43666814	1	4	54	0	1	0	0	0	0	0	0	0	10605	1189	41	3		3	NNT	5	43666814	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	38314	43666814	137248446	1494	58088											
FGF10	2255	broad.mit.edu	37	chr5	44388352	44388352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttaatcattttacaggGgttggggacgtaaatattta	9	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44388352	T	T	44388352	1	4	54	0	1	0	0	0	0	0	0	0	5896	1247	43	2		2	FGF10	5	44388352	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	721538	44388352	136526908	1495	58089											
HCN1	348980	broad.mit.edu	37	chr5	45262060	45262060	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcgtggcttttctgcgtctGggtctgtgtttaagactgag	13	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45262060	C	C	45262060	3	2	54	1	0	0	0	0	1	0	0	0	7062	1348	47	4	40	4	HCN1	5	45262060	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	873708	45262060	135653200	1496	58090											
HCN1	348980	broad.mit.edu	37	chr5	45307301	45307301	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaataaccaagatcacataCaaatctaaatgattggttaa	4	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45307301	T	T	45307301	1	4	54	0	1	0	0	0	0	0	0	0	7062	493	17	4		4	HCN1	5	45307301	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45241	45307301	135607959	1497	58091											
HCN1	348980	broad.mit.edu	37	chr5	45312810	45312810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttagcaaacggcacacCaggagattatatcccgcacc	9	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45312810	A	A	45312810	1	1	54	0	1	0	0	0	0	0	0	0	7062	609	21	2		2	HCN1	5	45312810	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5509	45312810	135602450	1498	58092											
HCN1	348980	broad.mit.edu	37	chr5	45353852	45353852	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatttgcagatcattcataCttcaacaacacagatgccct	5	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45353852	G	G	45353852	1	3	54	0	1	0	0	0	0	0	0	0	7062	580	20	4		4	HCN1	5	45353852	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	41042	45353852	135561408	1499	58093											
HCN1	348980	broad.mit.edu	37	chr5	45386401	45386401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcctcccacctcagactcCtgagtagctgggagtatagg	11	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45386401	A	A	45386401	1	1	54	0	1	0	0	0	0	0	0	0	7062	696	24	2		2	HCN1	5	45386401	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	32549	45386401	135528859	1500	58094											
HCN1	348980	broad.mit.edu	37	chr5	45497392	45497392	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcgttgatctgtctaatgTtgacagtggggtgttaaagt	12	5	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45497392	G	G	45497392	1	3	54	0	1	0	0	0	0	0	0	0	7062	1740	60	5		5	HCN1	5	45497392	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	110991	45497392	135417868	1501	58095											
HCN1	348980	broad.mit.edu	37	chr5	45498183	45498183	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcttggagttgctcttctcGaggagtatctttgtggcgtt	13	7	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45498183	T	T	45498183	1	4	54	0	1	0	0	0	0	0	0	0	7062	1073	37	3		3	HCN1	5	45498183	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	791	45498183	135417077	1502	58096											
ITGA1	3672	broad.mit.edu	37	chr5	52201708	52201708	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggatggaagatggaaacatCaaaattctccagacgctcag	10	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52201708	A	A	52201708	2	1	54	1	0	0	0	0	0	0	0	1	7942	816	29	3		3	ITGA1	5	52201708	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6703525	52201708	128713552	1503	58097											
ARL15	54622	broad.mit.edu	37	chr5	53503219	53503219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaacacagacagagcatgCttctatttagtcttattcct	5	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53503219	A	A	53503219	1	1	54	0	1	0	0	0	0	0	0	0	933	812	28	3		3	ARL15	5	53503219	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1301511	53503219	127412041	1504	58098											
CDC20B	166979	broad.mit.edu	37	chr5	54415614	54415614	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggtgcatggcattttactCacccatttgcttaccaaaaa	6	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54415614	T	T	54415614	1	4	54	0	1	0	0	0	0	0	0	0	3090	841	29	4		4	CDC20B	5	54415614	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	912395	54415614	126499646	1505	58099											
CDC20B	166979	broad.mit.edu	37	chr5	54429501	54429502	+	Intron	DNP	AG	GT	GT													gataaaactacagtacaaagAgccggggaaggaaggaaatg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	54429502	GT	GT	54429501	1	3	54	0	1	0	0	0	0	0	0	0	3090	319	11	5		5	CDC20B	5	54429501	Intron	DNP	AG	TCGA-17-Z022-01A-01W-0746-08	13887	54429501	126485759	1506	58100											
IL31RA	133396	broad.mit.edu	37	chr5	55159378	55159378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctctcacatggcaaagGccaaggcaaatcccatggcc	8	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55159378	T	T	55159378	1	4	54	0	1	0	0	0	0	0	0	0	7761	1218	42	3		3	IL31RA	5	55159378	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	729877	55159378	125755882	1507	58101											
MAP3K1	4214	broad.mit.edu	37	chr5	56160465	56160465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcggcctcccaaagtGctgggattacaggcgtgagc	12	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56160465	T	T	56160465	1	4	54	0	1	0	0	0	0	0	0	0	9335	1334	46	3		3	MAP3K1	5	56160465	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1001087	56160465	124754795	1508	58102											
MIER3	166968	broad.mit.edu	37	chr5	56229127	56229127	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcctatccattattttttCactgccagtccttaatgaag	4	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56229127	T	T	56229127	3	4	54	1	0	0	0	0	1	0	0	0	9675	835	29	4	979	4	MIER3	5	56229127	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68662	56229127	124686133	1509	58103											
GPBP1	65056	broad.mit.edu	37	chr5	56558438	56558438	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagttacagaagaatggtctGagaaaaaatggtattttgaa	10	2	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56558438	A	A	56558438	2	1	54	1	0	0	0	0	0	0	0	1	6660	1277	45	4		4	GPBP1	5	56558438	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	329311	56558438	124356822	1510	58104											
RAB3C	115827	broad.mit.edu	37	chr5	58126224	58126225	+	Intron	DNP	GG	TT	TT													ggggggagtttgcattctgtGggatatttctgtgtcaccaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	58126225	TT	TT	58126224	1	4	54	0	1	0	0	0	0	0	0	0	13041	1363	47	2		2	RAB3C	5	58126224	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	1567786	58126224	122789036	1511	58105											
PDE4D	5144	broad.mit.edu	37	chr5	58648419	58648419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctatgagaccacactctcCtatgatccctgttcatatca	5	13	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58648419	A	A	58648419	1	1	54	0	1	0	0	0	0	0	0	0	11736	696	24	2		2	PDE4D	5	58648419	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	522195	58648419	122266841	1512	58106											
PDE4D	5144	broad.mit.edu	37	chr5	59040432	59040432	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctatctagagccaccCtgcttaagagatttaaaagc	9	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59040432	G	G	59040432	1	3	54	0	1	0	0	0	0	0	0	0	11736	696	24	4		4	PDE4D	5	59040432	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	392013	59040432	121874828	1513	58107											
PDE4D	5144	broad.mit.edu	37	chr5	59616957	59616957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaataaagctagaggcatcGtattatctgacttcaaacta	7	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59616957	T	T	59616957	1	4	54	0	1	0	0	0	0	0	0	0	11736	1160	40	3		3	PDE4D	5	59616957	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	576525	59616957	121298303	1514	58108											
FLJ37543	285668	broad.mit.edu	37	chr5	60931673	60931673	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctctaatgctacttccaatCtgtccatgctgcagggccca	7	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60931673	A	A	60931673	1	1	54	0	1	0	0	0	0	0	0	0	5986	928	32	3		3	FLJ37543	5	60931673	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1314716	60931673	119983587	1515	58109											
RGS7BP	401190	broad.mit.edu	37	chr5	63840522	63840522	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagaagaagaagaaaaaaaGaccatatactagttggtaag	9	3	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63840522	C	C	63840522	1	2	54	0	1	0	0	0	0	0	0	0	13420	957	33	4		4	RGS7BP	5	63840522	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2908849	63840522	117074738	1516	58110											
CWC27	10283	broad.mit.edu	37	chr5	64081303	64081303	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttacattatatttttaatttGataggttacaggggatacag	8	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64081303	A	A	64081303	1	1	54	0	1	0	0	0	0	0	0	0	4103	1305	45	4		4	CWC27	5	64081303	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	240781	64081303	116833957	1517	58111											
ADAMTS6	11174	broad.mit.edu	37	chr5	64452756	64452756	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagttaacattttgtaaacCtaattattctctcctctttt	2	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64452756	T	T	64452756	1	4	54	0	1	0	0	0	0	0	0	0	270	696	24	4		4	ADAMTS6	5	64452756	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	371453	64452756	116462504	1518	58112											
CD180	4064	broad.mit.edu	37	chr5	66486117	66486117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgagttctgatagccaGggttccagaacagcacaacg	11	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66486117	T	T	66486117	1	4	54	0	1	0	0	0	0	0	0	0	3002	1015	35	2		2	CD180	5	66486117	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2033361	66486117	114429143	1519	58113											
CD180	4064	broad.mit.edu	37	chr5	66492261	66492261	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaaattatatatacacCttatttcctttttaaagaca	2	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66492261	G	G	66492261	1	3	54	0	1	0	0	0	0	0	0	0	3002	696	24	4		4	CD180	5	66492261	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6144	66492261	114422999	1520	58114											
MAP1B	4131	broad.mit.edu	37	chr5	71482674	71482674	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggagacaaaagaagaagggAgggaacctcacagctctcct	13	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71482674	T	T	71482674	1	4	54	0	1	0	0	0	0	0	0	0	9320	319	11	5		5	MAP1B	5	71482674	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4990413	71482674	109432586	1521	58115											
MAP1B	4131	broad.mit.edu	37	chr5	71492222	71492222	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccattgagaaaggagaggctGaacaatctgaagaggaggct	14	6	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71492222	A	A	71492222	3	1	54	1	0	0	0	0	1	0	0	0	9320	1291	45	4	3058	4	MAP1B	5	71492222	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9548	71492222	109423038	1522	58116											
MAP1B	4131	broad.mit.edu	37	chr5	71493326	71493326	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcagtaagccccatggatGagcccgtgcctgactcagag	11	13	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71493326	A	A	71493326	3	1	54	1	0	0	0	0	1	0	0	0	9320	1291	45	4	4162	4	MAP1B	5	71493326	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1104	71493326	109421934	1523	58117											
RGNEF	64283	broad.mit.edu	37	chr5	73155442	73155442	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgatttctttcttttcctgGatctgaagtagcatcaggct	8	8	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73155442	C	C	73155442	1	2	54	0	1	0	0	0	0	0	0	0	13391	1189	41	4		4	RGNEF	5	73155442	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1662116	73155442	107759818	1524	58118											
FAM169A	26049	broad.mit.edu	37	chr5	74095109	74095109	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatcctgagaattaatcgCacagctacttttgtgaagtg	9	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74095109	T	T	74095109	1	4	54	0	1	0	0	0	0	0	0	0	5532	725	25	4		4	FAM169A	5	74095109	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	939667	74095109	106820151	1525	58119											
POC5	134359	broad.mit.edu	37	chr5	74970315	74970315	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagactgggtgtgagctgatCtggttccaagtgatctggaa	15	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74970315	A	A	74970315	3	1	54	1	0	0	0	0	1	0	0	0	12272	913	32	3	58	3	POC5	5	74970315	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	875206	74970315	105944945	1526	58120											
SV2C	22987	broad.mit.edu	37	chr5	75450213	75450213	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagatgatgaccactggggtCactgagagccacagatttaa	11	8	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75450213	A	A	75450213	1	1	54	0	1	0	0	0	0	0	0	0	15537	841	29	3		3	SV2C	5	75450213	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	479898	75450213	105465047	1527	58121											
F2RL2	2151	broad.mit.edu	37	chr5	75914407	75914407	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaaagaatttgggggagctCcacgaaaggtcttaatgggt	13	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75914407	T	T	75914407	3	4	54	1	0	0	0	0	1	0	0	0	5388	855	30	4	1003	4	F2RL2	5	75914407	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	464194	75914407	105000853	1528	58122											
IQGAP2	10788	broad.mit.edu	37	chr5	75932745	75932745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcacttctgatgcctttggCtgtctgaaggtttggtgaaa	12	7	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75932745	T	T	75932745	1	4	54	0	1	0	0	0	0	0	0	0	7885	812	28	4		4	IQGAP2	5	75932745	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18338	75932745	104982515	1529	58123											
IQGAP2	10788	broad.mit.edu	37	chr5	75973188	75973188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactcagtaagtggggatGgggagccatcttagcaatgg	14	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75973188	T	T	75973188	1	4	54	0	1	0	0	0	0	0	0	0	7885	1363	47	2		2	IQGAP2	5	75973188	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	40443	75973188	104942072	1530	58124											
PDE8B	8622	broad.mit.edu	37	chr5	76516734	76516734	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagtggaggcacaggcGgctcaagtagcttgaccaag	16	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76516734	C	C	76516734	1	2	54	0	1	0	0	0	0	0	0	0	11748	1131	39	4		4	PDE8B	5	76516734	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	543546	76516734	104398526	1531	58125											
AP3B1	8546	broad.mit.edu	37	chr5	77321667	77321667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttctgttacacacaacCaaatacaaaatccaatataa	4	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77321667	A	A	77321667	1	1	54	0	1	0	0	0	0	0	0	0	746	609	21	2		2	AP3B1	5	77321667	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	804933	77321667	103593593	1532	58126											
BHMT2	23743	broad.mit.edu	37	chr5	78376479	78376479	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccttcaaactgctaggctCactatctgaactcttgctct	5	13	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78376479	T	T	78376479	1	4	54	0	1	0	0	0	0	0	0	0	1432	841	29	4		4	BHMT2	5	78376479	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1054812	78376479	102538781	1533	58127											
PAPD4	167153	broad.mit.edu	37	chr5	78915546	78915546	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cataataacttctttaccctGtcacctactgtttattcaca	2	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78915546	C	C	78915546	2	2	54	1	0	0	0	0	0	0	0	1	11518	1364	48	4		4	PAPD4	5	78915546	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	539067	78915546	101999714	1534	58128											
FAM151B	167555	broad.mit.edu	37	chr5	79834384	79834384	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccttccttccttccttcCttccttccctcccttccttt	0	21	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79834384	T	T	79834384	1	4	54	0	1	0	0	0	0	0	0	0	5505	696	24	4		4	FAM151B	5	79834384	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	918838	79834384	101080876	1535	58129											
RASGRF2	5924	broad.mit.edu	37	chr5	80289787	80289787	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtggaagacccctagcacTttccataacttcatatttct	5	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80289787	A	A	80289787	1	1	54	0	1	0	0	0	0	0	0	0	13181	1624	56	5		5	RASGRF2	5	80289787	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	455403	80289787	100625473	1536	58130											
RASGRF2	5924	broad.mit.edu	37	chr5	80381625	80381625	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttgcatctagatccCcagatatatcatcacactcc	4	14	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80381625	G	G	80381625	3	3	54	1	0	0	0	0	1	0	0	0	13181	623	22	4	1196	4	RASGRF2	5	80381625	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	91838	80381625	100533635	1537	58131											
VCAN	1462	broad.mit.edu	37	chr5	82794682	82794682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttaaacaccattgccatGtaattctcctacttaacgtt	4	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82794682	T	T	82794682	1	4	54	0	1	0	0	0	0	0	0	0	17265	1392	48	3		3	VCAN	5	82794682	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2413057	82794682	98120578	1538	58132											
VCAN	1462	broad.mit.edu	37	chr5	82818169	82818169	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctagcattgaaggcaatcctCattttatcttgaaagttact	6	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82818169	A	A	82818169	1	1	54	0	1	0	0	0	0	0	0	0	17265	841	29	3		3	VCAN	5	82818169	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	23487	82818169	98097091	1539	58133											
VCAN	1462	broad.mit.edu	37	chr5	82833747	82833747	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gattccaattacagaaggctCtggagaagcagaagaagatg	12	6	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82833747	A	A	82833747	3	1	54	1	0	0	0	0	1	0	0	0	17265	913	32	3	4951	3	VCAN	5	82833747	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	15578	82833747	98081513	1540	58134											
VCAN	1462	broad.mit.edu	37	chr5	82834082	82834082	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggatcaattaattttacccTttgaattagaaagtccaaat	5	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82834082	A	A	82834082	3	1	54	1	0	0	0	0	1	0	0	0	17265	1609	56	5	5286	5	VCAN	5	82834082	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	335	82834082	98081178	1541	58135											
EDIL3	10085	broad.mit.edu	37	chr5	83479883	83479883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgagccaagatcgtgcCattgcactccagcctgggct	12	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83479883	A	A	83479883	1	1	54	0	1	0	0	0	0	0	0	0	4955	609	21	2		2	EDIL3	5	83479883	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	645801	83479883	97435377	1542	58136											
EDIL3	10085	broad.mit.edu	37	chr5	83525567	83525567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaataaacaaacctgtgcCaattttctggttgaaatctg	6	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83525567	A	A	83525567	1	1	54	0	1	0	0	0	0	0	0	0	4955	609	21	2		2	EDIL3	5	83525567	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45684	83525567	97389693	1543	58137											
EDIL3	10085	broad.mit.edu	37	chr5	83542241	83542241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaacaaagacgtaaaagatGttccagagatgaatatccac	8	8	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83542241	A	A	83542241	1	1	54	0	1	0	0	0	0	0	0	0	4955	1392	48	4		4	EDIL3	5	83542241	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16674	83542241	97373019	1544	58138											
EDIL3	10085	broad.mit.edu	37	chr5	83549878	83549878	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaataaaaagataactactGaaatacttaaattttgcact	4	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83549878	C	C	83549878	1	2	54	0	1	0	0	0	0	0	0	0	4955	1305	45	4		4	EDIL3	5	83549878	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7637	83549878	97365382	1545	58139											
C5orf36	285600	broad.mit.edu	37	chr5	93708083	93708083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccatgagggctttgcccCtgcatcaaacttctgcctga	8	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93708083	A	A	93708083	1	1	54	0	1	0	0	0	0	0	0	0	2318	696	24	2		2	C5orf36	5	93708083	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10158205	93708083	87207177	1546	58140											
MCTP1	79772	broad.mit.edu	37	chr5	94289137	94289137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaccactcttttgaaaCaacaaaaagtatttaaagga	6	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94289137	A	A	94289137	1	1	54	0	1	0	0	0	0	0	0	0	9493	493	17	3		3	MCTP1	5	94289137	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	581054	94289137	86626123	1547	58141											
TTC37	9652	broad.mit.edu	37	chr5	94860306	94860306	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgaaaactaagccaccAaagggtaataaaaagaaata	6	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94860306	G	G	94860306	1	3	54	0	1	0	0	0	0	0	0	0	16831	145	5	5		5	TTC37	5	94860306	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	571169	94860306	86054954	1548	58142											
PCSK1	5122	broad.mit.edu	37	chr5	95759237	95759237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgggcacttcagttccaaCctggagacccatctttcttt	7	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95759237	A	A	95759237	1	1	54	0	1	0	0	0	0	0	0	0	11694	522	18	3		3	PCSK1	5	95759237	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	898931	95759237	85156023	1549	58143											
SLCO4C1	353189	broad.mit.edu	37	chr5	101585309	101585309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatccacaaacatattgcCtcattaagggaaaagtagga	7	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101585309	A	A	101585309	1	1	54	0	1	0	0	0	0	0	0	0	14844	696	24	2		2	SLCO4C1	5	101585309	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5826072	101585309	79329951	1550	58144											
FER	2241	broad.mit.edu	37	chr5	108149489	108149489	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgtctcttcttccctcactCctccttttctggcaacaata	4	15	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108149489	T	T	108149489	1	4	54	0	1	0	0	0	0	0	0	0	5870	870	30	4		4	FER	5	108149489	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6564180	108149489	72765771	1551	58145											
FER	2241	broad.mit.edu	37	chr5	108387796	108387796	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaagtgcatctccacattGacaccatcagtttgggcaac	7	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108387796	A	A	108387796	1	1	54	0	1	0	0	0	0	0	0	0	5870	1305	45	4		4	FER	5	108387796	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	238307	108387796	72527464	1552	58146											
CAMK4	814	broad.mit.edu	37	chr5	110593654	110593654	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaacattgagaacacatgGacaatgagataccatctcag	8	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110593654	T	T	110593654	1	4	54	0	1	0	0	0	0	0	0	0	2631	1189	41	3		3	CAMK4	5	110593654	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2205858	110593654	70321606	1553	58147											
C5orf13	9315	broad.mit.edu	37	chr5	111100262	111100262	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagcagcatgggaaatacTtgcccccatgattaaattac	9	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111100262	A	A	111100262	1	1	54	0	1	0	0	0	0	0	0	0	2305	1624	56	5		5	C5orf13	5	111100262	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	506608	111100262	69814998	1554	58148											
YTHDC2	64848	broad.mit.edu	37	chr5	112889669	112889669	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaatattgctgaaaccagcAtcacagtcaatgatgttgtc	7	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112889669	C	C	112889669	3	2	54	1	0	0	0	0	1	0	0	0	17624	217	8	5	2145	5	YTHDC2	5	112889669	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1789407	112889669	68025591	1555	58149											
SEMA6A	57556	broad.mit.edu	37	chr5	115815594	115815594	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttccttcctctaattgcTggcatgtgtccaactagcct	6	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115815594	A	A	115815594	1	1	54	0	1	0	0	0	0	0	0	0	14152	1595	55	5		5	SEMA6A	5	115815594	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2925925	115815594	65099666	1556	58150											
SEMA6A	57556	broad.mit.edu	37	chr5	115823880	115823880	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccgtaatccacggcttgaAcaaagtatggttctgtagac	9	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115823880	T	T	115823880	3	4	54	1	0	0	0	0	1	0	0	0	14152	43	2	5	2468	5	SEMA6A	5	115823880	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	8286	115823880	65091380	1557	58151											
SEMA6A	57556	broad.mit.edu	37	chr5	115824042	115824042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaatgacttcacacatGcaagtgctggtgatttcaca	7	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115824042	T	T	115824042	1	4	54	0	1	0	0	0	0	0	0	0	14152	1334	46	3		3	SEMA6A	5	115824042	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	162	115824042	65091218	1558	58152											
SEMA6A	57556	broad.mit.edu	37	chr5	115898690	115898690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccgcaggaaggggggtcGccgtggtcgccatctgtgaa	16	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115898690	T	T	115898690	1	4	54	0	1	0	0	0	0	0	0	0	14152	1102	38	3		3	SEMA6A	5	115898690	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	74648	115898690	65016570	1559	58153											
PRR16	51334	broad.mit.edu	37	chr5	119970401	119970401	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcagacttcatgaaattgGagaaacaagaacaatccaaa	8	7	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119970401	T	T	119970401	1	4	54	0	1	0	0	0	0	0	0	0	12695	1189	41	3		3	PRR16	5	119970401	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4071711	119970401	60944859	1560	58154											
CSNK1G3	1456	broad.mit.edu	37	chr5	122923771	122923771	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtatttcagaacaaagtaGaagagacgatttagaagctt	9	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122923771	C	C	122923771	3	2	54	1	0	0	0	0	1	0	0	0	3990	942	33	4	705	4	CSNK1G3	5	122923771	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2953370	122923771	57991489	1561	58155											
SLC12A2	6558	broad.mit.edu	37	chr5	127503588	127503588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttaattcaataatttaGttcatttagaaaatgttaat	3	3	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127503588	T	T	127503588	1	4	54	0	1	0	0	0	0	0	0	0	14496	1044	36	3		3	SLC12A2	5	127503588	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4579817	127503588	53411672	1562	58156											
FBN2	2201	broad.mit.edu	37	chr5	127670751	127670751	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagttctagtaaaatgatttGaatttttaaaataacaacag	5	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127670751	A	A	127670751	1	1	54	0	1	0	0	0	0	0	0	0	5760	1305	45	4		4	FBN2	5	127670751	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	167163	127670751	53244509	1563	58157											
FBN2	2201	broad.mit.edu	37	chr5	127680979	127680979	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacatttaaagcaaaacCaattctcagagaatgtggaa	6	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127680979	T	T	127680979	1	4	54	0	1	0	0	0	0	0	0	0	5760	609	21	4		4	FBN2	5	127680979	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10228	127680979	53234281	1564	58158											
FBN2	2201	broad.mit.edu	37	chr5	127710241	127710241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttatggtgaatattaCtccactgtatagaaatatct	5	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127710241	A	A	127710241	1	1	54	0	1	0	0	0	0	0	0	0	5760	580	20	3		3	FBN2	5	127710241	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	29262	127710241	53205019	1565	58159											
SLC27A6	28965	broad.mit.edu	37	chr5	128317191	128317191	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaaaaaaaaaaagaaaaAaaaatccagttgtctcattt	3	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128317191	G	G	128317191	1	3	54	0	1	0	0	0	0	0	0	0	14644	29	1	5		5	SLC27A6	5	128317191	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	606950	128317191	52598069	1566	58160											
SLC27A6	28965	broad.mit.edu	37	chr5	128362870	128362870	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtgaatgcaaaaaatcccTtctttggctatgctgggcct	10	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128362870	A	A	128362870	3	1	54	1	0	0	0	0	1	0	0	0	14644	1609	56	5	1326	5	SLC27A6	5	128362870	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	45679	128362870	52552390	1567	58161											
ADAMTS19	171019	broad.mit.edu	37	chr5	128983636	128983636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcacttttcaattttggaAtgcaaaggttttactgataa	9	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128983636	T	T	128983636	1	4	54	0	1	0	0	0	0	0	0	0	264	116	4	5		5	ADAMTS19	5	128983636	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	620766	128983636	51931624	1568	58162											
ACSL6	23305	broad.mit.edu	37	chr5	131313436	131313436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaactttgcaaccctcaccCtgaatgaggcaataaaaggg	8	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131313436	T	T	131313436	1	4	54	0	1	0	0	0	0	0	0	0	181	696	24	4		4	ACSL6	5	131313436	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2329800	131313436	49601824	1569	58163											
ACSL6	23305	broad.mit.edu	37	chr5	131324067	131324067	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacataagacaggcctcgTgtacagaggaatttgccgtg	11	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131324067	A	A	131324067	1	1	54	0	1	0	0	0	0	0	0	0	181	1711	59	5		5	ACSL6	5	131324067	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	10631	131324067	49591193	1570	58164											
TIFAB	497189	broad.mit.edu	37	chr5	134785501	134785501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcagctggaggtgggcGtcctgcccccgtccgagaag	16	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134785501	T	T	134785501	3	4	54	1	0	0	0	0	1	0	0	0	16018	1136	40	3	360	3	TIFAB	5	134785501	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3461434	134785501	46129759	1571	58165											
TRPC7	57113	broad.mit.edu	37	chr5	135634082	135634082	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttagacagggaggcaaggGccaggtcatgcagcactttg	15	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135634082	C	C	135634082	1	2	54	0	1	0	0	0	0	0	0	0	16709	1218	42	4		4	TRPC7	5	135634082	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	848581	135634082	45281178	1572	58166											
SPOCK1	6695	broad.mit.edu	37	chr5	136372140	136372140	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagctctctctactttccttCcttcttgttgtacaatataa	3	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136372140	T	T	136372140	1	4	54	0	1	0	0	0	0	0	0	0	15197	870	30	4		4	SPOCK1	5	136372140	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	738058	136372140	44543120	1573	58167											
PKD2L2	27039	broad.mit.edu	37	chr5	137259145	137259145	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttattaatgatacctattctGaagtgaaagctgactattca	6	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137259145	A	A	137259145	3	1	54	1	0	0	0	0	1	0	0	0	12063	1291	45	4	1524	4	PKD2L2	5	137259145	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	887005	137259145	43656115	1574	58168											
HBEGF	1839	broad.mit.edu	37	chr5	139715731	139715731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtcaatccctgaccaCgatccctgcccatcctccat	5	19	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139715731	T	T	139715731	1	4	54	0	1	0	0	0	0	0	0	0	7047	551	19	4		4	HBEGF	5	139715731	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2456586	139715731	41199529	1575	58169											
PCDHA1	56147	broad.mit.edu	37	chr5	140167894	140167894	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatctctggtggagagcggCcaggcgccaaaggcgtcttc	15	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140167894	T	T	140167894	2	4	54	1	0	0	0	0	0	0	0	1	11613	726	26	4		4	PCDHA1	5	140167894	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	452163	140167894	40747366	1576	58170											
PCDHA3	56145	broad.mit.edu	37	chr5	140182308	140182308	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcgctgtcgagctacgtgtCggtacacgcggagagcggca	16	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140182308	A	A	140182308	4	1	54	1	0	0	0	0	0	1	0	0	11619	893	31	3	1528	3	PCDHA3	5	140182308	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14414	140182308	40732952	1577	58171											
PCDHA1	56147	broad.mit.edu	37	chr5	140201326	140201326	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaatacattgtgtggtgaTgcaatagaaagctcataatt	8	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140201326	A	A	140201326	1	1	54	0	1	0	0	0	0	0	0	0	11613	1479	51	5		5	PCDHA1	5	140201326	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	19018	140201326	40713934	1578	58172											
PCDHB2	56133	broad.mit.edu	37	chr5	140475971	140475971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggcgttcgagttccgcGtgggcgccgcagaccgcggc	17	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140475971	T	T	140475971	3	4	54	1	0	0	0	0	1	0	0	0	11636	1145	40	3	1599	3	PCDHB2	5	140475971	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	274645	140475971	40439289	1579	58173											
PCDHB3	56132	broad.mit.edu	37	chr5	140481977	140481977	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtgccccgggcggctgagCcgggctacctggtgaccaag	17	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140481977	G	G	140481977	3	3	54	1	0	0	0	0	1	0	0	0	11637	739	26	4	1746	4	PCDHB3	5	140481977	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6006	140481977	40433283	1580	58174											
PCDHB4	56131	broad.mit.edu	37	chr5	140501563	140501563	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgaggggattggatatAgggacctggactccaacatg	14	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140501563	T	T	140501563	1	4	54	0	1	0	0	0	0	0	0	0	11638	435	15	5		5	PCDHB4	5	140501563	5'Flank	SNP	A	TCGA-17-Z022-01A-01W-0746-08	19586	140501563	40413697	1581	58175											
PCDHB4	56131	broad.mit.edu	37	chr5	140503688	140503688	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcgtcgctcttcctcttctCggtgctcctgttcgtggcgg	12	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140503688	G	G	140503688	3	3	54	1	0	0	0	0	1	0	0	0	11638	893	31	4	2110	4	PCDHB4	5	140503688	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2125	140503688	40411572	1582	58176											
PCDHB7	56129	broad.mit.edu	37	chr5	140554119	140554119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtacccgctgcagaacaGctccgcgccctgcaccgagc	11	18	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140554119	T	T	140554119	3	4	54	1	0	0	0	0	1	0	0	0	11641	971	34	3	1705	3	PCDHB7	5	140554119	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	50431	140554119	40361141	1583	58177											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736567	140736567	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggacagagactcaggtcaGaatgcctggctgtcctacag	13	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140736567	C	C	140736567	3	2	54	1	0	0	0	0	1	0	0	0	11650	933	33	4	1802	4	PCDHGA4	5	140736567	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	182448	140736567	40178693	1584	58178											
KIAA0141	9812	broad.mit.edu	37	chr5	141309689	141309689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccataacattctcttgggcaGgtggcaatcctggtaaacca	9	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141309689	T	T	141309689	1	4	54	0	1	0	0	0	0	0	0	0	8226	1015	35	2		2	KIAA0141	5	141309689	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	573122	141309689	39605571	1585	58179											
KCTD16	57528	broad.mit.edu	37	chr5	143818765	143818765	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaagcttgcagacacagcGatcatatcgcataaataaat	7	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143818765	T	T	143818765	1	4	54	0	1	0	0	0	0	0	0	0	8173	1073	37	3		3	KCTD16	5	143818765	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2509076	143818765	37096495	1586	58180											
TCERG1	10915	broad.mit.edu	37	chr5	145851225	145851225	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggctggagtgcagtggcacGatctgggctcactgcaacct	15	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145851225	A	A	145851225	1	1	54	0	1	0	0	0	0	0	0	0	15807	1073	37	4		4	TCERG1	5	145851225	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2032460	145851225	35064035	1587	58181											
GPR151	134391	broad.mit.edu	37	chr5	145895361	145895361	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgcagacaaaccagcctaGatcccaaacacttttggagt	7	12	0	2	rs147138565	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145895361	T	T	145895361	3	4	54	1	0	0	0	0	1	0	0	0	6722	933	33	3	947	3	GPR151	5	145895361	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	44136	145895361	35019899	1588	58182											
PPP2R2B	5521	broad.mit.edu	37	chr5	146030291	146030291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcaggacaggcacctgGgatgcaagagaaacaaatca	12	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146030291	T	T	146030291	1	4	54	0	1	0	0	0	0	0	0	0	12486	1247	43	2		2	PPP2R2B	5	146030291	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	134930	146030291	34884969	1589	58183											
PPP2R2B	5521	broad.mit.edu	37	chr5	146053336	146053336	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacctttcttagctcagtgaGaacttgaaagtttactgagc	8	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146053336	T	T	146053336	1	4	54	0	1	0	0	0	0	0	0	0	12486	957	33	3		3	PPP2R2B	5	146053336	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23045	146053336	34861924	1590	58184											
PPP2R2B	5521	broad.mit.edu	37	chr5	146071441	146071441	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcctttaccctctttttcGtataatttgctcctttactt	3	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146071441	A	A	146071441	1	1	54	0	1	0	0	0	0	0	0	0	12486	1160	40	4		4	PPP2R2B	5	146071441	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	18105	146071441	34843819	1591	58185											
PPP2R2B	5521	broad.mit.edu	37	chr5	146146797	146146797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttcaaaatttgaacccCgaggcccaccccttgtctcc	5	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146146797	A	A	146146797	1	1	54	0	1	0	0	0	0	0	0	0	12486	667	23	1		1	PPP2R2B	5	146146797	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	75356	146146797	34768463	1592	58186											
PPP2R2B	5521	broad.mit.edu	37	chr5	146184011	146184011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtagttctgttgcctgcCctctcccctccatcccctct	5	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146184011	A	A	146184011	1	1	54	0	1	0	0	0	0	0	0	0	12486	638	22	2		2	PPP2R2B	5	146184011	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37214	146184011	34731249	1593	58187											
PPP2R2B	5521	broad.mit.edu	37	chr5	146431115	146431115	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaatagcagcatggaaatGagataaagacaatttcggga	12	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146431115	A	A	146431115	1	1	54	0	1	0	0	0	0	0	0	0	12486	1305	45	4		4	PPP2R2B	5	146431115	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	247104	146431115	34484145	1594	58188											
DPYSL3	1809	broad.mit.edu	37	chr5	146780983	146780983	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaagaattcccaatacActgttcacactgcagactct	5	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146780983	C	C	146780983	1	2	54	0	1	0	0	0	0	0	0	0	4788	174	6	5		5	DPYSL3	5	146780983	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	349868	146780983	34134277	1595	58189											
C5orf46	389336	broad.mit.edu	37	chr5	147281487	147281487	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaacatttaatgcctgtctgGataaaatcttcacatgcatt	6	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147281487	A	A	147281487	1	1	54	0	1	0	0	0	0	0	0	0	2328	1189	41	4		4	C5orf46	5	147281487	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	500504	147281487	33633773	1596	58190											
SH3TC2	79628	broad.mit.edu	37	chr5	148290497	148290497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttccccgtgcctggcatGcgagcttcctcccacccatt	7	18	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148290497	T	T	148290497	1	4	54	0	1	0	0	0	0	0	0	0	14375	1334	46	3		3	SH3TC2	5	148290497	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1009010	148290497	32624763	1597	58191											
ABLIM3	22885	broad.mit.edu	37	chr5	148586477	148586477	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaactatgggaacactgGcattcagggaggggtttcct	14	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148586477	A	A	148586477	1	1	54	0	1	0	0	0	0	0	0	0	96	1218	42	4		4	ABLIM3	5	148586477	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	295980	148586477	32328783	1598	58192											
AFAP1L1	134265	broad.mit.edu	37	chr5	148679077	148679077	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccttcctccgcagtgctgGagcagctgctcccagagctc	11	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148679077	C	C	148679077	3	2	54	1	0	0	0	0	1	0	0	0	354	1175	41	4	28	4	AFAP1L1	5	148679077	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	92600	148679077	32236183	1599	58193											
PDE6A	5145	broad.mit.edu	37	chr5	149284813	149284813	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccactctgtagatgccaAcaccctccattattgcaccc	4	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149284813	G	G	149284813	1	3	54	0	1	0	0	0	0	0	0	0	11739	58	2	5		5	PDE6A	5	149284813	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	605736	149284813	31630447	1600	58194											
NDST1	3340	broad.mit.edu	37	chr5	149895377	149895377	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttacttacctcttgagccAcgggagttctggagtgcagg	13	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149895377	G	G	149895377	1	3	54	0	1	0	0	0	0	0	0	0	10350	174	6	5		5	NDST1	5	149895377	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	610564	149895377	31019883	1601	58195											
SLC36A3	285641	broad.mit.edu	37	chr5	150682854	150682854	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactgctgctctctgagggtGactgaggtccgttgtccaag	13	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150682854	T	T	150682854	4	4	54	1	0	0	0	0	0	1	0	0	14709	1294	45	3	1517	3	SLC36A3	5	150682854	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	787477	150682854	30232406	1602	58196											
NMUR2	56923	broad.mit.edu	37	chr5	151774923	151774923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatagcatggcagatcccCgtgataaattggagtactta	9	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151774923	A	A	151774923	1	1	54	0	1	0	0	0	0	0	0	0	10602	667	23	1		1	NMUR2	5	151774923	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1092069	151774923	29140337	1603	58197											
GRIA1	2890	broad.mit.edu	37	chr5	153108416	153108416	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggatctagaactagaaataCcatttgacccagccatccca	7	12	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153108416	T	T	153108416	1	4	54	0	1	0	0	0	0	0	0	0	6833	522	18	4		4	GRIA1	5	153108416	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1333493	153108416	27806844	1604	58198											
CNOT8	9337	broad.mit.edu	37	chr5	154251119	154251119	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacagagtaagactctgtctCaaaaaaaaaaaaaaaaaaaa	4	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154251119	G	G	154251119	1	3	54	0	1	0	0	0	0	0	0	0	3657	841	29	4		4	CNOT8	5	154251119	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1142703	154251119	26664141	1605	58199											
SGCD	6444	broad.mit.edu	37	chr5	155407980	155407980	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttacaaaatccaaagggGcagtgtaaactcaggctcaa	8	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155407980	A	A	155407980	1	1	54	0	1	0	0	0	0	0	0	0	14314	1218	42	4		4	SGCD	5	155407980	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1156861	155407980	25507280	1606	58200											
SGCD	6444	broad.mit.edu	37	chr5	155571122	155571122	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attccatggtgtatatgtgcCacattttcttaatccagttt	6	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155571122	T	T	155571122	1	4	54	0	1	0	0	0	0	0	0	0	14314	609	21	4		4	SGCD	5	155571122	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	163142	155571122	25344138	1607	58201											
SGCD	6444	broad.mit.edu	37	chr5	155998091	155998091	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgagacagagccttgctCtgtcgcccagcctggagtgc	13	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155998091	T	T	155998091	1	4	54	0	1	0	0	0	0	0	0	0	14314	928	32	4		4	SGCD	5	155998091	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	426969	155998091	24917169	1608	58202											
TIMD4	91937	broad.mit.edu	37	chr5	156353300	156353300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttgttgttttgttctGctcaggaactgctgtatcag	10	6	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156353300	T	T	156353300	3	4	54	1	0	0	0	0	1	0	0	0	16026	1328	46	3	284	3	TIMD4	5	156353300	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	355209	156353300	24561960	1609	58203											
FAM71B	153745	broad.mit.edu	37	chr5	156590429	156590429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgctgcccctgctattgCcacatctgttctaggtcctg	8	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156590429	A	A	156590429	3	1	54	1	0	0	0	0	1	0	0	0	5659	739	26	3	974	3	FAM71B	5	156590429	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	237129	156590429	24324831	1610	58204											
LSM11	134353	broad.mit.edu	37	chr5	157178528	157178528	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgttgcattcgacaagttCtggaatatggtaattaagcc	9	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157178528	A	A	157178528	3	1	54	1	0	0	0	0	1	0	0	0	9139	912	32	3	585	3	LSM11	5	157178528	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	588099	157178528	23736732	1611	58205											
EBF1	1879	broad.mit.edu	37	chr5	158236646	158236646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttccaagttcagaaaatGgcatcctaatataatagcac	5	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158236646	T	T	158236646	1	4	54	0	1	0	0	0	0	0	0	0	4920	1363	47	2		2	EBF1	5	158236646	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1058118	158236646	22678614	1612	58206											
EBF1	1879	broad.mit.edu	37	chr5	158250217	158250217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggcgtaccttccgaggGgtcaagcctccgagccctcc	13	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158250217	T	T	158250217	3	4	54	1	0	0	0	0	1	0	0	0	4920	1232	43	2	1066	2	EBF1	5	158250217	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13571	158250217	22665043	1613	58207											
EBF1	1879	broad.mit.edu	37	chr5	158439749	158439749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctagcctcaggcaatcCtcccaacttggcaacccaaa	5	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158439749	A	A	158439749	1	1	54	0	1	0	0	0	0	0	0	0	4920	696	24	2		2	EBF1	5	158439749	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	189532	158439749	22475511	1614	58208											
CCNJL	79616	broad.mit.edu	37	chr5	159758093	159758093	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtgatggtcttgcacCatccatggtctcagcgtcca	9	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159758093	T	T	159758093	1	4	54	0	1	0	0	0	0	0	0	0	2959	609	21	4		4	CCNJL	5	159758093	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1318344	159758093	21157167	1615	58209											
ATP10B	23120	broad.mit.edu	37	chr5	160042781	160042781	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagtgtcagaatcggggccAagagctcccttctcaactgg	12	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160042781	G	G	160042781	1	3	54	0	1	0	0	0	0	0	0	0	1121	145	5	5		5	ATP10B	5	160042781	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	284688	160042781	20872479	1616	58210											
GABRB2	2561	broad.mit.edu	37	chr5	160757728	160757728	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcatgagtttggtcccTaattgtgcttccatcattaa	8	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160757728	A	A	160757728	1	1	54	0	1	0	0	0	0	0	0	0	6227	1537	53	5		5	GABRB2	5	160757728	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	714947	160757728	20157532	1617	58211											
GABRA6	2559	broad.mit.edu	37	chr5	161116293	161116293	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgactgtcccatgaggctGgttaactttcctatggatgg	12	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161116293	T	T	161116293	2	4	54	1	0	0	0	0	0	0	0	1	6225	1335	47	2		2	GABRA6	5	161116293	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	358565	161116293	19798967	1618	58212											
ODZ2	57451	broad.mit.edu	37	chr5	166712162	166712162	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagatccagcatggtggTttttgacagatgtaccctac	11	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166712162	G	G	166712162	1	3	54	0	1	0	0	0	0	0	0	0	10930	1740	60	5		5	ODZ2	5	166712162	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5595869	166712162	14203098	1619	58213											
ODZ2	57451	broad.mit.edu	37	chr5	166915080	166915080	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataagaactgagtattagatCacataacactctttctcctg	5	9	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166915080	T	T	166915080	1	4	54	0	1	0	0	0	0	0	0	0	10930	841	29	4		4	ODZ2	5	166915080	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	202918	166915080	14000180	1620	58214											
ODZ2	57451	broad.mit.edu	37	chr5	167377223	167377223	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataacacatggcacccaggtCggtgcttctcttccccctgg	9	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167377223	T	T	167377223	1	4	54	0	1	0	0	0	0	0	0	0	10930	899	31	4		4	ODZ2	5	167377223	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	462143	167377223	13538037	1621	58215											
ODZ2	57451	broad.mit.edu	37	chr5	167416761	167416761	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctattggatggggaaaggCaagggaaaaggaggaagttc	17	3	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167416761	T	T	167416761	1	4	54	0	1	0	0	0	0	0	0	0	10930	725	25	4		4	ODZ2	5	167416761	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	39538	167416761	13498499	1622	58216											
ODZ2	57451	broad.mit.edu	37	chr5	167553739	167553739	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctgtggtgttgagctgtAatcattgtttttcttccaga	10	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167553739	T	T	167553739	1	4	54	0	1	0	0	0	0	0	0	0	10930	377	13	5		5	ODZ2	5	167553739	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	136978	167553739	13361521	1623	58217											
ODZ2	57451	broad.mit.edu	37	chr5	167673615	167673615	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaaattggcatgtccagtGaaataaatctgtttaatctg	7	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167673615	A	A	167673615	1	1	54	0	1	0	0	0	0	0	0	0	10930	1305	45	4		4	ODZ2	5	167673615	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	119876	167673615	13241645	1624	58218											
WWC1	23286	broad.mit.edu	37	chr5	167882159	167882159	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacgtgccacggaggggtaGgggtcggcacacctagcctt	15	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167882159	C	C	167882159	1	2	54	0	1	0	0	0	0	0	0	0	17538	1015	35	4		4	WWC1	5	167882159	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	208544	167882159	13033101	1625	58219											
SLIT3	6586	broad.mit.edu	37	chr5	168093815	168093815	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgtaagaatttattcactCatccatctgcctaccctccc	3	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168093815	T	T	168093815	1	4	54	0	1	0	0	0	0	0	0	0	14855	841	29	4		4	SLIT3	5	168093815	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	211656	168093815	12821445	1626	58220											
SLIT3	6586	broad.mit.edu	37	chr5	168119492	168119492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggctgaatcagagatgCagagaagcacatgagagaga	13	6	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168119492	A	A	168119492	1	1	54	0	1	0	0	0	0	0	0	0	14855	725	25	3		3	SLIT3	5	168119492	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25677	168119492	12795768	1627	58221											
SLIT3	6586	broad.mit.edu	37	chr5	168180884	168180884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacaaggttttgaggccaCtgaggccacggaacacgcgc	12	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168180884	A	A	168180884	3	1	54	1	0	0	0	0	1	0	0	0	14855	565	20	3	2837	3	SLIT3	5	168180884	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	61392	168180884	12734376	1628	58222											
SLIT3	6586	broad.mit.edu	37	chr5	168244285	168244285	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatagcacaggaggggagAgcaggtaaagcatcctcacc	13	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168244285	T	T	168244285	1	4	54	0	1	0	0	0	0	0	0	0	14855	319	11	5		5	SLIT3	5	168244285	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	63401	168244285	12670975	1629	58223											
SLIT3	6586	broad.mit.edu	37	chr5	168271693	168271693	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggagagcatgaaggctgAgcgggggcagcgtgaggggc	23	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168271693	T	T	168271693	1	4	54	0	1	0	0	0	0	0	0	0	14855	319	11	5		5	SLIT3	5	168271693	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	27408	168271693	12643567	1630	58224											
SLIT3	6586	broad.mit.edu	37	chr5	168271710	168271710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcgggggcagcgtgagGggccggcggcccaggccacc	20	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168271710	T	T	168271710	1	4	54	0	1	0	0	0	0	0	0	0	14855	1247	43	2		2	SLIT3	5	168271710	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	17	168271710	12643550	1631	58225											
SLIT3	6586	broad.mit.edu	37	chr5	168364599	168364599	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcattggccttgtgcggcGgaacgggaggcctggcattc	17	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168364599	A	A	168364599	1	1	54	0	1	0	0	0	0	0	0	0	14855	1131	39	4		4	SLIT3	5	168364599	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	92889	168364599	12550661	1632	58226											
SLIT3	6586	broad.mit.edu	37	chr5	168719649	168719649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttggataaagatccataGggcaagctcattaaaattgc	8	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168719649	A	A	168719649	1	1	54	0	1	0	0	0	0	0	0	0	14855	1015	35	4		4	SLIT3	5	168719649	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	355050	168719649	12195611	1633	58227											
DOCK2	1794	broad.mit.edu	37	chr5	169335529	169335529	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgaacacaaataggttccCacctgctagaggaaaataaa	7	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169335529	G	G	169335529	1	3	54	0	1	0	0	0	0	0	0	0	4727	609	21	4		4	DOCK2	5	169335529	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	615880	169335529	11579731	1634	58228											
DOCK2	1794	broad.mit.edu	37	chr5	169445596	169445596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctcagcaacacggcatGtatttcagacagacataatt	6	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169445596	T	T	169445596	1	4	54	0	1	0	0	0	0	0	0	0	4727	1392	48	3		3	DOCK2	5	169445596	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	110067	169445596	11469664	1635	58229											
LCP2	3937	broad.mit.edu	37	chr5	169724459	169724459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacacctcccacattctgcCccaattccatcgtcaagcct	3	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169724459	A	A	169724459	1	1	54	0	1	0	0	0	0	0	0	0	8764	638	22	2		2	LCP2	5	169724459	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	278863	169724459	11190801	1636	58230											
KCNIP1	30820	broad.mit.edu	37	chr5	169931701	169931701	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgctaggcgccgaggtgggCtgtgccacctgcctccctta	14	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169931701	G	G	169931701	1	3	54	0	1	0	0	0	0	0	0	0	8109	812	28	4		4	KCNIP1	5	169931701	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	207242	169931701	10983559	1637	58231											
KCNIP1	30820	broad.mit.edu	37	chr5	170034147	170034148	+	Intron	DNP	CT	TG	TG													tctgtcgcgcttctgttggtCtctcatgcccaagggtgtgg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	170034148	TG	TG	170034147	1	4	54	0	1	0	0	0	0	0	0	0	8109	928	32	4		4	KCNIP1	5	170034147	Intron	DNP	CT	TCGA-17-Z022-01A-01W-0746-08	102446	170034147	10881113	1638	58232											
KCNIP1	30820	broad.mit.edu	37	chr5	170103270	170103270	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagggagatatcattattatTgtgcaattgttatcattata	7	3	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170103270	A	A	170103270	1	1	54	0	1	0	0	0	0	0	0	0	8109	1827	63	5		5	KCNIP1	5	170103270	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	69123	170103270	10811990	1639	58233											
GABRP	2568	broad.mit.edu	37	chr5	170222221	170222221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctcccaggactacacaGccaccatatacctccgacag	5	20	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170222221	T	T	170222221	3	4	54	1	0	0	0	0	1	0	0	0	6234	971	34	3	264	3	GABRP	5	170222221	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	118951	170222221	10693039	1640	58234											
RANBP17	64901	broad.mit.edu	37	chr5	170678789	170678789	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgcccgcccccgcctctgtGattgggtggaagatggtgct	15	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170678789	T	T	170678789	1	4	54	0	1	0	0	0	0	0	0	0	13135	1305	45	3		3	RANBP17	5	170678789	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	456568	170678789	10236471	1641	58235											
FBXW11	23291	broad.mit.edu	37	chr5	171408960	171408960	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtatgattccatcttatatGaaattccagaacatatttaa	4	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171408960	A	A	171408960	1	1	54	0	1	0	0	0	0	0	0	0	5821	1305	45	4		4	FBXW11	5	171408960	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	730171	171408960	9506300	1642	58236											
HMP19	51617	broad.mit.edu	37	chr5	173500690	173500690	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaacgaaacattcctctgAgacagaaaacacacattgtg	6	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173500690	T	T	173500690	1	4	54	0	1	0	0	0	0	0	0	0	7312	319	11	5		5	HMP19	5	173500690	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2091730	173500690	7414570	1643	58237											
HMP19	51617	broad.mit.edu	37	chr5	173502654	173502654	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtctgtcatgccacctgcTccgcaatcccagtcacaagg	10	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173502654	C	C	173502654	1	2	54	0	1	0	0	0	0	0	0	0	7312	1566	54	5		5	HMP19	5	173502654	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1964	173502654	7412606	1644	58238											
HMP19	51617	broad.mit.edu	37	chr5	173531369	173531369	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggttgagtagtcccaggtCactatcaaattcagttagag	11	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173531369	A	A	173531369	1	1	54	0	1	0	0	0	0	0	0	0	7312	841	29	3		3	HMP19	5	173531369	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	28715	173531369	7383891	1645	58239											
CPLX2	10814	broad.mit.edu	37	chr5	175308318	175308318	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgttgcagtcatcaTatctatgtgttacagattgt	10	5	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175308318	A	A	175308318	1	1	54	0	1	0	0	0	0	0	0	0	3837	1421	49	5		5	CPLX2	5	175308318	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1776949	175308318	5606942	1646	58240											
EIF4E1B	253314	broad.mit.edu	37	chr5	176072392	176072392	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccagctgctgtgtctgatCggggagagctttgaggaaca	15	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176072392	T	T	176072392	2	4	54	1	0	0	0	0	0	0	0	1	5071	874	31	4		4	EIF4E1B	5	176072392	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	764074	176072392	4842868	1647	58241											
TSPAN17	26262	broad.mit.edu	37	chr5	176083288	176083288	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcggagggggagtagacCcctgggcctgggcagatgtg	20	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176083288	T	T	176083288	1	4	54	0	1	0	0	0	0	0	0	0	16766	638	22	4		4	TSPAN17	5	176083288	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10896	176083288	4831972	1648	58242											
PDLIM7	9260	broad.mit.edu	37	chr5	176924623	176924623	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccccgcccccacagccacCctccactttgagcgcgcgga	9	21	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176924623	T	T	176924623	1	4	54	0	1	0	0	0	0	0	0	0	11778	638	22	4		4	PDLIM7	5	176924623	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	841335	176924623	3990637	1649	58243											
COL23A1	91522	broad.mit.edu	37	chr5	177665750	177665750	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgaggagcccgagaagctcCgcccccatccaggccacctt	10	18	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177665750	T	T	177665750	1	4	54	0	1	0	0	0	0	0	0	0	3714	667	23	4		4	COL23A1	5	177665750	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	741127	177665750	3249510	1650	58244											
COL23A1	91522	broad.mit.edu	37	chr5	177672890	177672890	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggttactgcatgagggcaGaagatacacacaagaggcac	12	9	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177672890	A	A	177672890	1	1	54	0	1	0	0	0	0	0	0	0	3714	957	33	4		4	COL23A1	5	177672890	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7140	177672890	3242370	1651	58245											
CANX	821	broad.mit.edu	37	chr5	179155689	179155689	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatttcttctccctcctccCctgcaagagtggtcctagga	8	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179155689	T	T	179155689	1	4	54	0	1	0	0	0	0	0	0	0	2644	638	22	4		4	CANX	5	179155689	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1482799	179155689	1759571	1652	58246											
SQSTM1	8878	broad.mit.edu	37	chr5	179250038	179250038	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtgaaggatgacatcttcCgaatctacattaaaggtaag	9	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179250038	T	T	179250038	4	4	54	1	0	0	0	0	0	1	0	0	15248	644	23	4	292	4	SQSTM1	5	179250038	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	94349	179250038	1665222	1653	58247											
TBC1D9B	23061	broad.mit.edu	37	chr5	179320367	179320367	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaggaacatggagaagaaGagctcctggtcgcgggtgtc	16	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179320367	A	A	179320367	2	1	54	1	0	0	0	0	0	0	0	1	15750	929	33	4		4	TBC1D9B	5	179320367	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	70329	179320367	1594893	1654	58248											
RASGEF1C	255426	broad.mit.edu	37	chr5	179546459	179546459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggctggctggggacagGgcagcagagcctcagtggtg	18	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179546459	T	T	179546459	1	4	54	0	1	0	0	0	0	0	0	0	13179	1247	43	2		2	RASGEF1C	5	179546459	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	226092	179546459	1368801	1655	58249											
C6orf201	404220	broad.mit.edu	37	chr6	4087979	4087979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtatgtgggccgagggtgGgcatgagttcttttcagcaa	15	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4087979	A	A	4087979	1	1	54	0	1	0	0	0	0	0	0	0	2374	1247	43	4		4	C6orf201	6	4087979	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		4087979	167027088	1656	58250											
RPP40	10799	broad.mit.edu	37	chr6	5000982	5000982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaaggtcagtttctaccCctgctccagctcactcaata	5	13	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5000982	A	A	5000982	1	1	54	0	1	0	0	0	0	0	0	0	13725	638	22	2		2	RPP40	6	5000982	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	913003	5000982	166114085	1657	58251											
FARS2	10667	broad.mit.edu	37	chr6	5353249	5353249	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagcacaccagaacttatTtttcctgtctgtggccctgt	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5353249	G	G	5353249	1	3	54	0	1	0	0	0	0	0	0	0	5735	1856	64	5		5	FARS2	6	5353249	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	352267	5353249	165761818	1658	58252											
FARS2	10667	broad.mit.edu	37	chr6	5448296	5448296	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagagtttcgaaagatccAgaatgtttatttgaggacaa	9	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5448296	T	T	5448296	1	4	54	0	1	0	0	0	0	0	0	0	5735	203	7	5		5	FARS2	6	5448296	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	95047	5448296	165666771	1659	58253											
CAGE1	285782	broad.mit.edu	37	chr6	7341725	7341725	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attccaggtattccatcgcgAgtctgaggagtagatgtcac	11	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7341725	T	T	7341725	1	4	54	0	1	0	0	0	0	0	0	0	2598	319	11	5		5	CAGE1	6	7341725	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1893429	7341725	163773342	1660	58254											
CAGE1	285782	broad.mit.edu	37	chr6	7374455	7374455	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccttgaattctattagtAgatcccctgtttggctttct	8	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7374455	G	G	7374455	1	3	54	0	1	0	0	0	0	0	0	0	2598	435	15	5		5	CAGE1	6	7374455	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	32730	7374455	163740612	1661	58255											
DSP	1832	broad.mit.edu	37	chr6	7582930	7582930	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactcaggtggtacaggaaaGagagagccttctggtgaaaa	13	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7582930	C	C	7582930	3	2	54	1	0	0	0	0	1	0	0	0	4821	942	33	4	5529	4	DSP	6	7582930	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	208475	7582930	163532137	1662	58256											
SLC35B3	51000	broad.mit.edu	37	chr6	8420861	8420861	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatatgaaaattgcagctgtCacactatcatttaaaatgct	6	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8420861	T	T	8420861	1	4	54	0	1	0	0	0	0	0	0	0	14691	841	29	4		4	SLC35B3	6	8420861	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	837931	8420861	162694206	1663	58257											
PAK1IP1	55003	broad.mit.edu	37	chr6	10709681	10709681	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaaataaaaacaatgcAgtgaatcacagatgtctcct	7	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10709681	T	T	10709681	3	4	54	1	0	0	0	0	1	0	0	0	11494	188	7	5	1213	5	PAK1IP1	6	10709681	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2288820	10709681	160405386	1664	58258											
MAK	4117	broad.mit.edu	37	chr6	10782701	10782701	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacctgtggctaaacctatAcacccaccgtgccttctgtt	6	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10782701	G	G	10782701	1	3	54	0	1	0	0	0	0	0	0	0	9289	406	14	5		5	MAK	6	10782701	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	73020	10782701	160332366	1665	58259											
NEDD9	4739	broad.mit.edu	37	chr6	11227897	11227897	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcctctacatacaaatagaGggtgggtctctcatattcag	9	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11227897	C	C	11227897	1	2	54	0	1	0	0	0	0	0	0	0	10408	1015	35	4		4	NEDD9	6	11227897	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	445196	11227897	159887170	1666	58260											
NEDD9	4739	broad.mit.edu	37	chr6	11238181	11238181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgttttatcatttctaGtttgacattagtttttaaaa	5	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11238181	T	T	11238181	1	4	54	0	1	0	0	0	0	0	0	0	10408	1044	36	3		3	NEDD9	6	11238181	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	10284	11238181	159876886	1667	58261											
PHACTR1	221692	broad.mit.edu	37	chr6	12757458	12757458	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatgcccatatggggtgggGagcagagtgagagagagctg	18	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12757458	T	T	12757458	1	4	54	0	1	0	0	0	0	0	0	0	11904	1189	41	3		3	PHACTR1	6	12757458	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1519277	12757458	158357609	1668	58262											
SIRT5	23408	broad.mit.edu	37	chr6	13612256	13612256	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgataagtgatgggggtttaGaagtagcaaagagcacccac	13	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13612256	C	C	13612256	1	2	54	0	1	0	0	0	0	0	0	0	14454	957	33	4		4	SIRT5	6	13612256	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	854798	13612256	157502811	1669	58263											
RNF182	221687	broad.mit.edu	37	chr6	13977247	13977247	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actacttatcctgcctttttGcatcgctgccagatttggat	7	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13977247	C	C	13977247	1	2	54	0	1	0	0	0	0	0	0	0	13577	1334	46	4		4	RNF182	6	13977247	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	364991	13977247	157137820	1670	58264											
ATXN1	6310	broad.mit.edu	37	chr6	16399773	16399773	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatcagacttaagtcatttCtgcctcatggttctagaaga	7	8	5	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16399773	G	G	16399773	1	3	54	0	1	0	0	0	0	0	0	0	1213	928	32	4		4	ATXN1	6	16399773	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2422526	16399773	154715294	1671	58265											
MBOAT1	154141	broad.mit.edu	37	chr6	20191747	20191747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggctacacctcagtttgcCagtgtccctcctaaaagtta	7	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20191747	A	A	20191747	1	1	54	0	1	0	0	0	0	0	0	0	9449	609	21	2		2	MBOAT1	6	20191747	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3791974	20191747	150923320	1672	58266											
MBOAT1	154141	broad.mit.edu	37	chr6	20207113	20207113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactagaaatccttcactcaCatatcccagccctccagctc	3	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20207113	A	A	20207113	1	1	54	0	1	0	0	0	0	0	0	0	9449	493	17	3		3	MBOAT1	6	20207113	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	15366	20207113	150907954	1673	58267											
SOX4	6659	broad.mit.edu	37	chr6	21596142	21596142	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgagcgagatgatctcGggagactggctcgagtccag	17	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21596142	T	T	21596142	2	4	54	1	0	0	0	0	0	0	0	1	15067	1103	39	1		1	SOX4	6	21596142	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1389029	21596142	149518925	1674	58268											
LRRC16A	55604	broad.mit.edu	37	chr6	25344339	25344339	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtccccatgttcactccatCccacggtcatatcttgatcc	5	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25344339	G	G	25344339	1	3	54	0	1	0	0	0	0	0	0	0	9058	870	30	4		4	LRRC16A	6	25344339	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3748197	25344339	145770728	1675	58269											
LRRC16A	55604	broad.mit.edu	37	chr6	25460756	25460756	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgaatgtcactctacaCtagaccttgcttcttacata	5	12	3	2	rs142056931	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25460756	T	T	25460756	1	4	54	0	1	0	0	0	0	0	0	0	9058	580	20	4		4	LRRC16A	6	25460756	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	116417	25460756	145654311	1676	58270											
SLC17A4	10050	broad.mit.edu	37	chr6	25756237	25756237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctttttcaccacaactaGcctagcccatccaccatcaa	4	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25756237	T	T	25756237	1	4	54	0	1	0	0	0	0	0	0	0	14532	986	34	3		3	SLC17A4	6	25756237	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	295481	25756237	145358830	1677	58271											
SLC17A3	10786	broad.mit.edu	37	chr6	25845597	25845597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaccatgcataaaatcaCtatcctttaccttcataaac	1	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25845597	A	A	25845597	1	1	54	0	1	0	0	0	0	0	0	0	14531	580	20	3		3	SLC17A3	6	25845597	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	89360	25845597	145269470	1678	58272											
HIST1H3C	8352	broad.mit.edu	37	chr6	26045641	26045641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgctctcattgcaaatGgctcgtacgaagcaaacagc	10	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26045641	T	T	26045641	3	4	54	1	0	0	0	0	1	0	0	0	7224	1348	47	2	5	2	HIST1H3C	6	26045641	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	200044	26045641	145069426	1679	58273											
HIST1H3C	8352	broad.mit.edu	37	chr6	26045849	26045849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctgccgttccagcgcCtggtgcgagaaatcgcccag	14	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26045849	T	T	26045849	2	4	54	1	0	0	0	0	0	0	0	1	7224	680	24	4		4	HIST1H3C	6	26045849	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	208	26045849	145069218	1680	58274											
HIST1H1C	3006	broad.mit.edu	37	chr6	26056240	26056240	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgcgccgccagccgccttCttgggcttcttggctgcccc	12	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26056240	T	T	26056240	2	4	54	1	0	0	0	0	0	0	0	1	7191	912	32	4		4	HIST1H1C	6	26056240	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10391	26056240	145058827	1681	58275											
HIST1H4C	8364	broad.mit.edu	37	chr6	26104361	26104361	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgaggtgtgcttaaggttttCttagagaacgttattcgaga	12	5	1	2	rs141888021		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26104361	T	T	26104361	2	4	54	1	0	0	0	0	0	0	0	1	7234	912	32	4		4	HIST1H4C	6	26104361	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	48121	26104361	145010706	1682	58276											
HIST1H4H	8365	broad.mit.edu	37	chr6	26282796	26282796	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatataaatcagatcaactCagtcctctgctcaaaaccct	3	12	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26282796	T	T	26282796	1	4	54	0	1	0	0	0	0	0	0	0	7239	841	29	4		4	HIST1H4H	6	26282796	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	178435	26282796	144832271	1683	58277											
BTN2A2	10385	broad.mit.edu	37	chr6	26390243	26390243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttcagaatcctttatGcccagcgcatctccctggat	7	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26390243	T	T	26390243	3	4	54	1	0	0	0	0	1	0	0	0	1571	1319	46	3	749	3	BTN2A2	6	26390243	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	107447	26390243	144724824	1684	58278											
BTN2A1	11120	broad.mit.edu	37	chr6	26468738	26468738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcacggtgcctgaagagggCctgacacttcacagagtggg	15	10	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26468738	T	T	26468738	2	4	54	1	0	0	0	0	0	0	0	1	1570	726	26	4		4	BTN2A1	6	26468738	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	78495	26468738	144646329	1685	58279											
HIST1H4L	8368	broad.mit.edu	37	chr6	27841084	27841084	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccgtgtaggtaactgcatCgcggattacattctccaaaa	8	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27841084	T	T	27841084	3	4	54	1	0	0	0	0	1	0	0	0	7243	884	31	4	110	4	HIST1H4L	6	27841084	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1372346	27841084	143273983	1686	58280											
ZNF187	7741	broad.mit.edu	37	chr6	28240098	28240098	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttgcagctggatcttggAgaaacaggacaacaggtggt	14	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28240098	G	G	28240098	2	3	54	1	0	0	0	0	0	0	0	1	17879	304	11	5		5	ZNF187	6	28240098	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	399014	28240098	142874969	1687	58281											
ZNF323	64288	broad.mit.edu	37	chr6	28294414	28294414	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgctcaatgagtactgaactCttagtgaagcttttcccaca	7	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28294414	G	G	28294414	3	3	54	1	0	0	0	0	1	0	0	0	17969	912	32	4	474	4	ZNF323	6	28294414	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	54316	28294414	142820653	1688	58282											
OR2W1	26692	broad.mit.edu	37	chr6	29012467	29012467	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtgggcaaattcagagtGagtgtacataatactacaga	10	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29012467	A	A	29012467	2	1	54	1	0	0	0	0	0	0	0	1	11126	1277	45	4		4	OR2W1	6	29012467	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	718053	29012467	142102600	1689	58283											
OR10C1	442194	broad.mit.edu	37	chr6	29408208	29408208	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgctgctgagccaccgggTgtgtctacagctagctgggt	14	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29408208	A	A	29408208	3	1	54	1	0	0	0	0	1	0	0	0	10992	1696	59	5	418	5	OR10C1	6	29408208	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	395741	29408208	141706859	1690	58284											
OR2H1	26716	broad.mit.edu	37	chr6	29430730	29430730	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atattatcattcctatcactGtccattcttaatatttctat	1	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29430730	C	C	29430730	1	2	54	0	1	0	0	0	0	0	0	0	11095	1392	48	4		4	OR2H1	6	29430730	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22522	29430730	141684337	1691	58285											
UBD	10537	broad.mit.edu	37	chr6	29524019	29524019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaaagaacctggtcctGcacaggaaccttggtcttag	10	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29524019	T	T	29524019	3	4	54	1	0	0	0	0	1	0	0	0	16969	1328	46	3	365	3	UBD	6	29524019	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	93289	29524019	141591048	1692	58286											
OR2H2	7932	broad.mit.edu	37	chr6	29555742	29555742	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggttaaccaaagctccacAccgggcttcctccttctggg	9	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29555742	G	G	29555742	2	3	54	1	0	0	0	0	0	0	0	1	11096	146	6	5		5	OR2H2	6	29555742	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	31723	29555742	141559325	1693	58287											
MOG	4340	broad.mit.edu	37	chr6	29635537	29635538	+	Intron	DNP	CC	AA	AA													ccgtctctccctctcaatacCctgttttcccctcagtttcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29635538	AA	AA	29635537	1	1	54	0	1	0	0	0	0	0	0	0	9787	638	22	2		2	MOG	6	29635537	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	79795	29635537	141479530	1694	58288											
CCHCR1	54535	broad.mit.edu	37	chr6	31112687	31112687	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtagagttcctgctgctgGgtcagctcctgccgcagact	12	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31112687	A	A	31112687	2	1	54	1	0	0	0	0	0	0	0	1	2905	1219	43	4		4	CCHCR1	6	31112687	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1477150	31112687	140002380	1695	58289											
C6orf25	80739	broad.mit.edu	37	chr6	31692586	31692586	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaggccagtaaaggaggaaGagcccaagattccaggggac	15	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31692586	C	C	31692586	3	2	54	1	0	0	0	0	1	0	0	0	2383	943	33	4	623	4	C6orf25	6	31692586	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	579899	31692586	139422481	1696	58290											
VARS	7407	broad.mit.edu	37	chr6	31749557	31749557	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgagagaggccaaaggtCagaggtcagagggagtggag	18	5	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31749557	T	T	31749557	1	4	54	0	1	0	0	0	0	0	0	0	17250	841	29	4		4	VARS	6	31749557	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	56971	31749557	139365510	1697	58291											
LSM2	57819	broad.mit.edu	37	chr6	31766222	31766222	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctcccctctccttctccagGaaccaattctggggcccgtg	8	17	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31766222	A	A	31766222	1	1	54	0	1	0	0	0	0	0	0	0	9143	1189	41	4		4	LSM2	6	31766222	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16665	31766222	139348845	1698	58292											
TNXB	7148	broad.mit.edu	37	chr6	32023848	32023848	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggagaggctcagcgagtcAggggaggatcctgtcactgt	16	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32023848	T	T	32023848	2	4	54	1	0	0	0	0	0	0	0	1	16469	175	7	5		5	TNXB	6	32023848	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	257626	32023848	139091219	1699	58293											
ATF6B	1388	broad.mit.edu	37	chr6	32084491	32084491	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaactcacccttcggaaaGagacaacataaaatgtgtct	7	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32084491	C	C	32084491	3	2	54	1	0	0	0	0	1	0	0	0	1089	942	33	4	336	4	ATF6B	6	32084491	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	60643	32084491	139030576	1700	58294											
C6orf10	10665	broad.mit.edu	37	chr6	32291473	32291473	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagagtttcttcttggtaGgtcattataacaatagggaa	10	4	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32291473	A	A	32291473	1	1	54	0	1	0	0	0	0	0	0	0	2340	1015	35	4		4	C6orf10	6	32291473	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	206982	32291473	138823594	1701	58295											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33063857	33063857	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaggaaccactgcaggaGaatacccagaaaatcgaaag	10	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33063857	T	T	33063857	1	4	54	0	1	0	0	0	0	0	0	0	7270	957	33	3		3	HLA-DPB1	6	33063857	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	772384	33063857	138051210	1702	58296											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33075302	33075302	+	Intron	DEL	C	-	-													ctgatcctcctatttctctgCcctgtttaggtcccaggcag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33075302	-	-	33075302	6	5	54	0	1	1	0	1	0	0	0	0	7270	754	26	0		0	HLA-DPB1	6	33075302	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	11445	33075302	138039765	1703	58297											
COL11A2	1302	broad.mit.edu	37	chr6	33131475	33131475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcccatgaagcagacagGccccagcagcacccctcccc	7	20	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33131475	T	T	33131475	3	4	54	1	0	0	0	0	1	0	0	0	3700	1203	42	3	23	3	COL11A2	6	33131475	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	56173	33131475	137983592	1704	58298											
COL11A2	1302	broad.mit.edu	37	chr6	33139547	33139547	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggcctgggcgccctggCggaccaatgggtccccctga	16	15	0	1	rs61738289		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33139547	T	T	33139547	2	4	54	1	0	0	0	0	0	0	0	1	3700	755	27	4		4	COL11A2	6	33139547	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8072	33139547	137975520	1705	58299											
COL11A2	1302	broad.mit.edu	37	chr6	33146840	33146840	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacacccatccacccctgGggcactcacccttcgcccag	6	21	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33146840	A	A	33146840	1	1	54	0	1	0	0	0	0	0	0	0	3700	1247	43	4		4	COL11A2	6	33146840	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7293	33146840	137968227	1706	58300											
VPS52	6293	broad.mit.edu	37	chr6	33236340	33236340	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgtgcctctagcttccTgctctctgactgcggctgcc	10	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33236340	C	C	33236340	3	2	54	1	0	0	0	0	1	0	0	0	17341	1580	55	5	1592	5	VPS52	6	33236340	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	89500	33236340	137878727	1707	58301											
KIFC1	3833	broad.mit.edu	37	chr6	33372728	33372728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagccttactgactgagCgggaagaacgtcttcatggg	14	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33372728	A	A	33372728	2	1	54	1	0	0	0	0	0	0	0	1	8382	759	27	3		3	KIFC1	6	33372728	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	136388	33372728	137742339	1708	58302											
ITPR3	3710	broad.mit.edu	37	chr6	33653826	33653826	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaacccttctgtgccccGcagaacttcctgcgctgtca	8	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33653826	A	A	33653826	1	1	54	0	1	0	0	0	0	0	0	0	7992	1102	38	4		4	ITPR3	6	33653826	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	281098	33653826	137461241	1709	58303											
LEMD2	221496	broad.mit.edu	37	chr6	33748822	33748822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaaagcaccaggccctcCcaggaatgtataagcactga	10	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33748822	A	A	33748822	1	1	54	0	1	0	0	0	0	0	0	0	8792	638	22	2		2	LEMD2	6	33748822	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	94996	33748822	137366245	1710	58304											
PACSIN1	29993	broad.mit.edu	37	chr6	34499334	34499334	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggttagccctcgggatgcgGtacggggagacattgaagct	16	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34499334	A	A	34499334	1	1	54	0	1	0	0	0	0	0	0	0	11468	1276	44	4		4	PACSIN1	6	34499334	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	750512	34499334	136615733	1711	58305											
TEAD3	7005	broad.mit.edu	37	chr6	35448254	35448254	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcccagacctctcatctcTagggaactacatgtaaatgg	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35448254	C	C	35448254	1	2	54	0	1	0	0	0	0	0	0	0	15862	1537	53	5		5	TEAD3	6	35448254	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	948920	35448254	135666813	1712	58306											
TULP1	7287	broad.mit.edu	37	chr6	35480560	35480560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctaggccccccagggttcAggtgccacgaactgggggcc	14	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35480560	T	T	35480560	1	4	54	0	1	0	0	0	0	0	0	0	16899	203	7	5		5	TULP1	6	35480560	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	32306	35480560	135634507	1713	58307											
BRPF3	27154	broad.mit.edu	37	chr6	36175015	36175015	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagacttttacctgctgcagCcccgtgaggcttgaacaggg	12	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36175015	G	G	36175015	1	3	54	0	1	0	0	0	0	0	0	0	1530	754	26	4		4	BRPF3	6	36175015	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	694455	36175015	134940052	1714	58308											
ETV7	51513	broad.mit.edu	37	chr6	36346503	36346503	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttgctgtgaaggcctatCctgtgtgttgcaggatgttt	12	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36346503	A	A	36346503	1	1	54	0	1	0	0	0	0	0	0	0	5326	870	30	3		3	ETV7	6	36346503	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	171488	36346503	134768564	1715	58309											
KCTD20	222658	broad.mit.edu	37	chr6	36449479	36449479	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttgtgctgacggatgagGattctgtggactgggatgaa	16	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36449479	A	A	36449479	3	1	54	1	0	0	0	0	1	0	0	0	8178	1174	41	4	817	4	KCTD20	6	36449479	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	102976	36449479	134665588	1716	58310											
GLO1	2739	broad.mit.edu	37	chr6	38653291	38653291	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaatggctgttattgccaTatagcaaatggaaagtttct	9	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38653291	C	C	38653291	1	2	54	0	1	0	0	0	0	0	0	0	6513	1421	49	5		5	GLO1	6	38653291	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2203812	38653291	132461776	1717	58311											
DNAH8	1769	broad.mit.edu	37	chr6	38758297	38758297	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactaaaaggacatccgttAggtttaaaatatcatgtttt	6	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38758297	T	T	38758297	1	4	54	0	1	0	0	0	0	0	0	0	4647	435	15	5		5	DNAH8	6	38758297	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	105006	38758297	132356770	1718	58312											
GLP1R	2740	broad.mit.edu	37	chr6	39053332	39053332	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaaagacagagtctctcTtctctctcccatctcctgtc	5	15	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39053332	A	A	39053332	1	1	54	0	1	0	0	0	0	0	0	0	6516	1624	56	5		5	GLP1R	6	39053332	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	295035	39053332	132061735	1719	58313											
KCNK17	89822	broad.mit.edu	37	chr6	39267319	39267319	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgggactctggctcccggtCaggtccctgtctccagcttt	12	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39267319	G	G	39267319	3	3	54	1	0	0	0	0	1	0	0	0	8134	826	29	4	119	4	KCNK17	6	39267319	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	213987	39267319	131847748	1720	58314											
KCNK16	83795	broad.mit.edu	37	chr6	39282624	39282624	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctttgtaccccaaaagagGgaccccagctgattgccact	8	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39282624	A	A	39282624	1	1	54	0	1	0	0	0	0	0	0	0	8133	1247	43	4		4	KCNK16	6	39282624	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15305	39282624	131832443	1721	58315											
KIF6	221458	broad.mit.edu	37	chr6	39328383	39328383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggctgtaaatgaatgGggcccgtgcctcagaatccc	13	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39328383	T	T	39328383	1	4	54	0	1	0	0	0	0	0	0	0	8378	1247	43	2		2	KIF6	6	39328383	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45759	39328383	131786684	1722	58316											
KIF6	221458	broad.mit.edu	37	chr6	39411980	39411980	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtggcaaagccataactaTaccctaggtttgtctgactc	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39411980	C	C	39411980	1	2	54	0	1	0	0	0	0	0	0	0	8378	1421	49	5		5	KIF6	6	39411980	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	83597	39411980	131703087	1723	58317											
KIF6	221458	broad.mit.edu	37	chr6	39507899	39507899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcctaggcggaagggtgGgctctgggactgtctgaatt	16	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39507899	T	T	39507899	3	4	54	1	0	0	0	0	1	0	0	0	8378	1232	43	2	963	2	KIF6	6	39507899	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	95919	39507899	131607168	1724	58318											
DAAM2	23500	broad.mit.edu	37	chr6	39866660	39866660	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtctccttacagcctagcaGaactggagaaggaggtgggc	14	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39866660	C	C	39866660	3	2	54	1	0	0	0	0	1	0	0	0	4249	943	33	4	2708	4	DAAM2	6	39866660	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	358761	39866660	131248407	1725	58319											
MOCS1	4337	broad.mit.edu	37	chr6	39881105	39881106	+	Missense_Mutation	DNP	CC	AA	AA													agcgcacatccagggggaggCcctcagtcaaggccgcaaag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	39881106	AA	AA	39881105	3	1	54	1	0	0	0	0	1	0	0	0	9784	739	26	3	464	3	MOCS1	6	39881105	Missense_Mutation	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	14445	39881105	131233962	1726	58320											
LRFN2	57497	broad.mit.edu	37	chr6	40399611	40399611	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcttttgggaggctctccGcccccactgcctccacctcc	10	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40399611	A	A	40399611	2	1	54	1	0	0	0	0	0	0	0	1	9025	1074	38	4		4	LRFN2	6	40399611	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	518506	40399611	130715456	1727	58321											
LRFN2	57497	broad.mit.edu	37	chr6	40530110	40530110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagacctaagggccctagAaggcttcctggggttggatg	15	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40530110	T	T	40530110	1	4	54	0	1	0	0	0	0	0	0	0	9025	261	9	5		5	LRFN2	6	40530110	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	130499	40530110	130584957	1728	58322											
NFYA	4800	broad.mit.edu	37	chr6	41062141	41062141	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttctcgttttagaaatacCtgcatgagtctcggcaccgt	8	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41062141	T	T	41062141	2	4	54	1	0	0	0	0	0	0	0	1	10484	680	24	4		4	NFYA	6	41062141	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	532031	41062141	130052926	1729	58323											
TREM2	54209	broad.mit.edu	37	chr6	41126388	41126388	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagaagcagtgttcaggcaGagtagtctcttgccagagca	14	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41126388	C	C	41126388	1	2	54	0	1	0	0	0	0	0	0	0	16595	957	33	4		4	TREM2	6	41126388	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	64247	41126388	129988679	1730	58324											
TREML4	285852	broad.mit.edu	37	chr6	41196296	41196296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagtggggcagggagcaGcatggctgtgtgaccatagg	18	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41196296	T	T	41196296	1	4	54	0	1	0	0	0	0	0	0	0	16598	986	34	3		3	TREML4	6	41196296	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	69908	41196296	129918771	1731	58325											
GUCA1B	2979	broad.mit.edu	37	chr6	42165653	42165653	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattttgacttttgtgcccCtctctcctcctaacgcctca	4	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42165653	T	T	42165653	1	4	54	0	1	0	0	0	0	0	0	0	6954	696	24	4		4	GUCA1B	6	42165653	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	969357	42165653	128949414	1732	58326											
UBR2	23304	broad.mit.edu	37	chr6	42600415	42600415	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacactgctttacaagccttCaaatttaggagagtacagag	8	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42600415	T	T	42600415	2	4	54	1	0	0	0	0	0	0	0	1	17028	825	29	4		4	UBR2	6	42600415	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	434762	42600415	128514652	1733	58327											
UBR2	23304	broad.mit.edu	37	chr6	42615820	42615820	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagagtgctagtagttattAttaacatgaaacacacttgt	7	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42615820	C	C	42615820	1	2	54	0	1	0	0	0	0	0	0	0	17028	464	16	5		5	UBR2	6	42615820	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	15405	42615820	128499247	1734	58328											
CUL7	9820	broad.mit.edu	37	chr6	43020250	43020250	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacctcccctgcagactcctGggagggcccgatgacctggc	12	16	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43020250	C	C	43020250	3	2	54	1	0	0	0	0	1	0	0	0	4093	1357	47	4	5015	4	CUL7	6	43020250	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	404430	43020250	128094817	1735	58329											
SLC22A7	10864	broad.mit.edu	37	chr6	43266951	43266951	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgcaggactggggagggAcaaagtttcctattccccaa	13	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43266951	T	T	43266951	1	4	54	0	1	0	0	0	0	0	0	0	14573	290	10	5		5	SLC22A7	6	43266951	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	246701	43266951	127848116	1736	58330											
SLC22A7	10864	broad.mit.edu	37	chr6	43267842	43267842	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggggagcgggagatacagGaagtgaaagatgagattaat	16	3	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43267842	C	C	43267842	1	2	54	0	1	0	0	0	0	0	0	0	14573	1189	41	4		4	SLC22A7	6	43267842	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	891	43267842	127847225	1737	58331											
SLC29A1	2030	broad.mit.edu	37	chr6	44194486	44194486	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagcctctggtttgacctCagtcatcatcgatgttgtcg	12	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44194486	T	T	44194486	1	4	54	0	1	0	0	0	0	0	0	0	14648	841	29	4		4	SLC29A1	6	44194486	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	926644	44194486	126920581	1738	58332											
RUNX2	860	broad.mit.edu	37	chr6	45454355	45454355	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattctgctgtgccatattaGggtagactgggcatcacatg	12	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45454355	A	A	45454355	1	1	54	0	1	0	0	0	0	0	0	0	13859	1015	35	4		4	RUNX2	6	45454355	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1259869	45454355	125660712	1739	58333											
OPN5	221391	broad.mit.edu	37	chr6	47791165	47791165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgccacaaatcctaagattGttttcccatggcaagcctta	6	12	0	1	rs79544859	byFrequency;by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47791165	T	T	47791165	1	4	54	0	1	0	0	0	0	0	0	0	10977	1392	48	3		3	OPN5	6	47791165	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2336810	47791165	123323902	1740	58334											
OPN5	221391	broad.mit.edu	37	chr6	47793885	47793885	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacgatgaactcccatgtatCcatcatccagcctcaatagt	5	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47793885	G	G	47793885	1	3	54	0	1	0	0	0	0	0	0	0	10977	870	30	4		4	OPN5	6	47793885	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2720	47793885	123321182	1741	58335											
C6orf138	442213	broad.mit.edu	37	chr6	47976798	47976798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctgatctttgctgtttGgcacttccactaccccgccc	7	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47976798	T	T	47976798	3	4	54	1	0	0	0	0	1	0	0	0	2355	1348	47	2	2069	2	C6orf138	6	47976798	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	182913	47976798	123138269	1742	58336											
C6orf138	442213	broad.mit.edu	37	chr6	47989924	47989924	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctccctctcctcttctttCccctctccctccctttattt	0	20	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47989924	A	A	47989924	1	1	54	0	1	0	0	0	0	0	0	0	2355	870	30	3		3	C6orf138	6	47989924	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13126	47989924	123125143	1743	58337											
TFAP2B	7021	broad.mit.edu	37	chr6	50810880	50810880	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacagccgacccagccccatCctggagccggggatccagag	12	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50810880	T	T	50810880	2	4	54	1	0	0	0	0	0	0	0	1	15911	845	30	4		4	TFAP2B	6	50810880	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2820956	50810880	120304187	1744	58338											
PKHD1	5314	broad.mit.edu	37	chr6	51550650	51550650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagtctgctggtgtgagGggtggaagatatggtggagc	19	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51550650	T	T	51550650	1	4	54	0	1	0	0	0	0	0	0	0	12066	1247	43	2		2	PKHD1	6	51550650	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	739770	51550650	119564417	1745	58339											
PKHD1	5314	broad.mit.edu	37	chr6	51604637	51604638	+	Intron	DNP	TG	CT	CT													ttctgttgaaactgaagctcTgatttctttctgctgcctcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	51604638	CT	CT	51604637	1	2	54	0	1	0	0	0	0	0	0	0	12066	1595	55	5		5	PKHD1	6	51604637	Intron	DNP	TG	TCGA-17-Z022-01A-01W-0746-08	53987	51604637	119510430	1746	58340											
PKHD1	5314	broad.mit.edu	37	chr6	51670862	51670862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatccctgaggaattgccaCactgatgggaggggggaggg	18	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51670862	A	A	51670862	1	1	54	0	1	0	0	0	0	0	0	0	12066	493	17	3		3	PKHD1	6	51670862	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	66225	51670862	119444205	1747	58341											
TMEM14A	28978	broad.mit.edu	37	chr6	52542012	52542013	+	Intron	INS	-	T	T													tgaaagggaattagtgggggINStttggaggttgtgctaggtc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52542013	T	T	52542012	6	5	54	0	1	1	1	0	0	0	0	0	16186	1276	44	0		0	TMEM14A	6	52542012	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	871150	52542012	118573055	1748	58342											
GSTA2	2939	broad.mit.edu	37	chr6	52616602	52616602	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caccctgactttccccacctCtgttgccttactgcatggat	6	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52616602	G	G	52616602	1	3	54	0	1	0	0	0	0	0	0	0	6897	928	32	4		4	GSTA2	6	52616602	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	74590	52616602	118498465	1749	58343											
GSTA3	2940	broad.mit.edu	37	chr6	52764717	52764717	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtgccccaaaatgctgAacagcttcacctactttttc	5	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52764717	T	T	52764717	1	4	54	0	1	0	0	0	0	0	0	0	6898	261	9	5		5	GSTA3	6	52764717	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	148115	52764717	118350350	1750	58344											
GSTA4	2941	broad.mit.edu	37	chr6	52858910	52858910	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttttctttcaaaggtctCaaaagctgtatgacaaatcc	5	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52858910	G	G	52858910	1	3	54	0	1	0	0	0	0	0	0	0	6899	841	29	4		4	GSTA4	6	52858910	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	94193	52858910	118256157	1751	58345											
C6orf142	90523	broad.mit.edu	37	chr6	53995667	53995667	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagaagaaatatgaaaagGactcatcaaaagataggaaa	9	3	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53995667	T	T	53995667	1	4	54	0	1	0	0	0	0	0	0	0	2356	1189	41	3		3	C6orf142	6	53995667	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1136757	53995667	117119400	1752	58346											
C6orf142	90523	broad.mit.edu	37	chr6	54115064	54115064	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatacactgttggtgggagTgcaaattagttcgaccatgt	11	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54115064	G	G	54115064	1	3	54	0	1	0	0	0	0	0	0	0	2356	1711	59	5		5	C6orf142	6	54115064	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	119397	54115064	117000003	1753	58347											
FAM83B	222584	broad.mit.edu	37	chr6	54744460	54744460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgagagaggttgattacGgccaaattgtgaaggtcctt	13	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54744460	T	T	54744460	1	4	54	0	1	0	0	0	0	0	0	0	5687	1131	39	1		1	FAM83B	6	54744460	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	629396	54744460	116370607	1754	58348											
FAM83B	222584	broad.mit.edu	37	chr6	54746728	54746728	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttccccctgccgcacggCaggccccagtgtgtgatgtt	11	17	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54746728	T	T	54746728	1	4	54	0	1	0	0	0	0	0	0	0	5687	725	25	4		4	FAM83B	6	54746728	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2268	54746728	116368339	1755	58349											
COL21A1	81578	broad.mit.edu	37	chr6	55925474	55925474	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttatatcctctacaatatgtCctaagaatttgtattacttt	3	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55925474	G	G	55925474	1	3	54	0	1	0	0	0	0	0	0	0	3712	870	30	4		4	COL21A1	6	55925474	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1178746	55925474	115189593	1756	58350											
COL21A1	81578	broad.mit.edu	37	chr6	56031799	56031799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactaagaacataaacccaGtagaattaaagttgaggcac	7	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56031799	T	T	56031799	1	4	54	0	1	0	0	0	0	0	0	0	3712	1044	36	3		3	COL21A1	6	56031799	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	106325	56031799	115083268	1757	58351											
DST	667	broad.mit.edu	37	chr6	56347577	56347577	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcatctggaccttgacCcaggaggagtcatcccgact	10	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56347577	G	G	56347577	3	3	54	1	0	0	0	0	1	0	0	0	4823	624	22	4	2138	4	DST	6	56347577	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	315778	56347577	114767490	1758	58352											
DST	667	broad.mit.edu	37	chr6	56393681	56393681	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaaccatttagtaaagcctGatctacattttgtttcctga	5	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56393681	C	C	56393681	3	2	54	1	0	0	0	0	1	0	0	0	4823	1299	45	4	5894	4	DST	6	56393681	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46104	56393681	114721386	1759	58353											
DST	667	broad.mit.edu	37	chr6	56480811	56480811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaattatgccccctgtaCtgacttgggcttcaaggcat	9	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56480811	A	A	56480811	1	1	54	0	1	0	0	0	0	0	0	0	4823	565	20	3		3	DST	6	56480811	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87130	56480811	114634256	1760	58354											
ZNF451	26036	broad.mit.edu	37	chr6	57015568	57015571	+	Frame_Shift_Del	DEL	ATAT	-	-													ttacctgcgaaccatgactcAtatagtctttgtagattttg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57015571	-	-	57015568	7	5	54	1	0	1	0	1	0	0	0	0	18049	217	8	0	2702	0	ZNF451	6	57015568	Frame_Shift_Del	DEL	ATAT	TCGA-17-Z022-01A-01W-0746-08	534757	57015568	114099499	1761	58355											
PRIM2	5558	broad.mit.edu	37	chr6	57512374	57512374	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctagaatccatgtttcaGgtattaagttttaaacaagt	7	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512374	A	A	57512374	1	1	54	0	1	0	0	0	0	0	0	0	12597	1015	35	4		4	PRIM2	6	57512374	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	496806	57512374	113602693	1762	58356											
KHDRBS2	202559	broad.mit.edu	37	chr6	62770196	62770196	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaattgagggatgggctGggggtgagtgggaagtaggc	21	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62770196	A	A	62770196	1	1	54	0	1	0	0	0	0	0	0	0	8217	1363	47	4		4	KHDRBS2	6	62770196	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5257822	62770196	108344871	1763	58357											
EYS	346007	broad.mit.edu	37	chr6	64587480	64587480	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaacttggttccattcttCccaacactttcaggtacacc	4	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64587480	A	A	64587480	1	1	54	0	1	0	0	0	0	0	0	0	5375	870	30	3		3	EYS	6	64587480	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1817284	64587480	106527587	1764	58358											
EYS	346007	broad.mit.edu	37	chr6	64708987	64708987	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagaggcatgggaaatcTctgtgtctttcttctgtact	10	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64708987	C	C	64708987	3	2	54	1	0	0	0	0	1	0	0	0	5375	1551	54	5	2659	5	EYS	6	64708987	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	121507	64708987	106406080	1765	58359											
EYS	346007	broad.mit.edu	37	chr6	64983090	64983090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacatcaggtcccttctGctcctagtttgctaaatctt	6	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64983090	T	T	64983090	1	4	54	0	1	0	0	0	0	0	0	0	5375	1334	46	3		3	EYS	6	64983090	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	274103	64983090	106131977	1766	58360											
EYS	346007	broad.mit.edu	37	chr6	65096427	65096427	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatctccacctggccccacCcttgacacatggagattatt	6	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65096427	G	G	65096427	1	3	54	0	1	0	0	0	0	0	0	0	5375	638	22	4		4	EYS	6	65096427	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	113337	65096427	106018640	1767	58361											
BAI3	577	broad.mit.edu	37	chr6	69646435	69646435	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atctggtgtggaagagtggtCccagtggagcacatgttcgg	16	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69646435	T	T	69646435	3	4	54	1	0	0	0	0	1	0	0	0	1305	855	30	4	903	4	BAI3	6	69646435	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4550008	69646435	101468632	1768	58362											
BAI3	577	broad.mit.edu	37	chr6	69728345	69728345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatacacattgttggaatGgggatgatggactttcagaa	11	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69728345	T	T	69728345	3	4	54	1	0	0	0	0	1	0	0	0	1305	1348	47	2	2103	2	BAI3	6	69728345	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	81910	69728345	101386722	1769	58363											
BAI3	577	broad.mit.edu	37	chr6	69908776	69908776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatatcattttctacatcCtaatcacaccatctatcaaa	0	11	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69908776	A	A	69908776	1	1	54	0	1	0	0	0	0	0	0	0	1305	696	24	2		2	BAI3	6	69908776	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	180431	69908776	101206291	1770	58364											
BAI3	577	broad.mit.edu	37	chr6	70087811	70087811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggaggcaaagctcctgGttgggacaagtaaatgagcc	14	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70087811	T	T	70087811	1	4	54	0	1	0	0	0	0	0	0	0	1305	1276	44	3		3	BAI3	6	70087811	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	179035	70087811	101027256	1771	58365											
COL19A1	1310	broad.mit.edu	37	chr6	70897242	70897242	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacacacacatgcatacacGtgtaaagcacaaatacagaa	6	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70897242	C	C	70897242	1	2	54	0	1	0	0	0	0	0	0	0	3708	1160	40	4		4	COL19A1	6	70897242	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	809431	70897242	100217825	1772	58366											
B3GAT2	135152	broad.mit.edu	37	chr6	71628067	71628067	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccaatttgccagtctgtgTcttttaattggggcatttag	9	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71628067	A	A	71628067	1	1	54	0	1	0	0	0	0	0	0	0	1259	1682	58	5		5	B3GAT2	6	71628067	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	730825	71628067	99487000	1773	58367											
KCNQ5	56479	broad.mit.edu	37	chr6	73759980	73759980	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggaaagaaggaaggaGggaaggaaggaaggaaggaa	20	0	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73759980	A	A	73759980	1	1	54	0	1	0	0	0	0	0	0	0	8156	1015	35	4		4	KCNQ5	6	73759980	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2131913	73759980	97355087	1774	58368											
COL12A1	1303	broad.mit.edu	37	chr6	75800123	75800123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatctccattctgcaaccCctctaaggaaacaatctaat	3	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75800123	A	A	75800123	1	1	54	0	1	0	0	0	0	0	0	0	3701	638	22	2		2	COL12A1	6	75800123	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2040143	75800123	95314944	1775	58369											
COL12A1	1303	broad.mit.edu	37	chr6	75860873	75860873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctggacctttgacactGttacacaaattaatggtgag	8	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75860873	T	T	75860873	3	4	54	1	0	0	0	0	1	0	0	0	3701	1368	48	3	5244	3	COL12A1	6	75860873	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	60750	75860873	95254194	1776	58370											
MRAP2	112609	broad.mit.edu	37	chr6	84772655	84772655	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttggtcttgcagtcttcgtGatttttatgttttttgtgct	10	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84772655	A	A	84772655	2	1	54	1	0	0	0	0	0	0	0	1	9848	1277	45	4		4	MRAP2	6	84772655	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8911782	84772655	86342412	1777	58371											
KIAA1009	22832	broad.mit.edu	37	chr6	84859507	84859507	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaaacagtagaagaaaCctgggaattaagcaagggga	11	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84859507	T	T	84859507	1	4	54	0	1	0	0	0	0	0	0	0	8273	522	18	4		4	KIAA1009	6	84859507	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	86852	84859507	86255560	1778	58372											
RNGTT	8732	broad.mit.edu	37	chr6	89479548	89479548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atccacagaattcagactggGaggcttccatttcaaaatat	7	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89479548	A	A	89479548	3	1	54	1	0	0	0	0	1	0	0	0	13614	1174	41	4	425	4	RNGTT	6	89479548	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4620041	89479548	81635519	1779	58373											
MDN1	23195	broad.mit.edu	37	chr6	90457211	90457211	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgaagtatcaaaacaaaTgaaaaggggcatcagctgca	10	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90457211	C	C	90457211	1	2	54	0	1	0	0	0	0	0	0	0	9508	1479	51	5		5	MDN1	6	90457211	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	977663	90457211	80657856	1780	58374											
BACH2	60468	broad.mit.edu	37	chr6	90781809	90781809	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaatccacgtatatgtggaCccacgcacttcaaacctgtg	7	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90781809	G	G	90781809	1	3	54	0	1	0	0	0	0	0	0	0	1289	522	18	4		4	BACH2	6	90781809	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	324598	90781809	80333258	1781	58375											
BACH2	60468	broad.mit.edu	37	chr6	90809026	90809026	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtcccaacatagctgactTtggccaagcaatttgaacaa	7	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90809026	A	A	90809026	1	1	54	0	1	0	0	0	0	0	0	0	1289	1856	64	5		5	BACH2	6	90809026	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	27217	90809026	80306041	1782	58376											
BACH2	60468	broad.mit.edu	37	chr6	90845570	90845570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcaggtctcatggctgGcggaatgtggatgatacact	13	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90845570	T	T	90845570	1	4	54	0	1	0	0	0	0	0	0	0	1289	1218	42	3		3	BACH2	6	90845570	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	36544	90845570	80269497	1783	58377											
MAP3K7	6885	broad.mit.edu	37	chr6	91260258	91260258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgtaatggctcatctgctCctggaaagtactatatataa	7	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91260258	A	A	91260258	3	1	54	1	0	0	0	0	1	0	0	0	9347	855	30	3	978	3	MAP3K7	6	91260258	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	414688	91260258	79854809	1784	58378											
EPHA7	2045	broad.mit.edu	37	chr6	93965485	93965485	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttttacattattaggtccTgctttcgtggtagaaaaatc	8	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93965485	A	A	93965485	1	1	54	0	1	0	0	0	0	0	0	0	5214	1595	55	5		5	EPHA7	6	93965485	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2705227	93965485	77149582	1785	58379											
EPHA7	2045	broad.mit.edu	37	chr6	93982069	93982069	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactccattgggatgctctgGttcctgccaggaaagctcga	12	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93982069	C	C	93982069	3	2	54	1	0	0	0	0	1	0	0	0	5214	1261	44	4	1648	4	EPHA7	6	93982069	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16584	93982069	77132998	1786	58380											
FUT9	10690	broad.mit.edu	37	chr6	96651080	96651080	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccatttttaattgtctgcAttatcctgggctgtttcatg	8	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96651080	G	G	96651080	3	3	54	1	0	0	0	0	1	0	0	0	6171	217	8	5	51	5	FUT9	6	96651080	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2669011	96651080	74463987	1787	58381											
FUT9	10690	broad.mit.edu	37	chr6	96651793	96651793	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccacaaggattacatcacGgaaaagctatacaatgcttt	6	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96651793	T	T	96651793	2	4	54	1	0	0	0	0	0	0	0	1	6171	1103	39	1		1	FUT9	6	96651793	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	713	96651793	74463274	1788	58382											
C6orf167	253714	broad.mit.edu	37	chr6	97676907	97676907	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaatagctggtctcaaaCacttcttgaacaccatcaat	5	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97676907	A	A	97676907	2	1	54	1	0	0	0	0	0	0	0	1	2365	465	17	3		3	C6orf167	6	97676907	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1025114	97676907	73438160	1789	58383											
GRIK2	2898	broad.mit.edu	37	chr6	102276435	102276435	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaagagagaagatccaaCtaagcacaactgaacacaac	7	9	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102276435	A	A	102276435	1	1	54	0	1	0	0	0	0	0	0	0	6840	580	20	3		3	GRIK2	6	102276435	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4599528	102276435	68838632	1790	58384											
GRIK2	2898	broad.mit.edu	37	chr6	102372530	102372530	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaccctgactcagacgtGgtggaaaacaattttacctt	8	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102372530	A	A	102372530	2	1	54	1	0	0	0	0	0	0	0	1	6840	1335	47	4		4	GRIK2	6	102372530	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96095	102372530	68742537	1791	58385											
HACE1	57531	broad.mit.edu	37	chr6	105219187	105219187	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagacccagatcacttatatCattatctaaaatccattgca	3	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105219187	T	T	105219187	3	4	54	1	0	0	0	0	1	0	0	0	7006	826	29	4	661	4	HACE1	6	105219187	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2846657	105219187	65895880	1792	58386											
LIN28B	389421	broad.mit.edu	37	chr6	105526482	105526482	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catgcacttcaactctccctCgagaagtgggaggcgggcat	12	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105526482	G	G	105526482	3	3	54	1	0	0	0	0	1	0	0	0	8879	876	31	4	591	4	LIN28B	6	105526482	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	307295	105526482	65588585	1793	58387											
PREP	5550	broad.mit.edu	37	chr6	105736529	105736529	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaacccccacgcctgGccagtaatgtattttagaaa	10	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105736529	C	C	105736529	1	2	54	0	1	0	0	0	0	0	0	0	12580	1218	42	4		4	PREP	6	105736529	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	210047	105736529	65378538	1794	58388											
SOBP	55084	broad.mit.edu	37	chr6	107864128	107864128	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcaagctccatacagaatCtaactcttgctctgagagac	8	11	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107864128	G	G	107864128	1	3	54	0	1	0	0	0	0	0	0	0	15026	928	32	4		4	SOBP	6	107864128	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2127599	107864128	63250939	1795	58389											
SCML4	256380	broad.mit.edu	37	chr6	108041816	108041816	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagtcccacgtttaaacAgccacactcccccttcccca	4	20	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108041816	G	G	108041816	1	3	54	0	1	0	0	0	0	0	0	0	14024	203	7	5		5	SCML4	6	108041816	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	177688	108041816	63073251	1796	58390											
MICAL1	64780	broad.mit.edu	37	chr6	109771184	109771184	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtcttaccgctcagccaaCacctctagggactcagcgcc	9	16	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109771184	G	G	109771184	2	3	54	1	0	0	0	0	0	0	0	1	9662	465	17	4		4	MICAL1	6	109771184	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1729368	109771184	61343883	1797	58391											
SLC22A16	85413	broad.mit.edu	37	chr6	110752467	110752467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgccgcttcccacagcCagcgatctggaaacagagga	11	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110752467	A	A	110752467	2	1	54	1	0	0	0	0	0	0	0	1	14560	581	21	2		2	SLC22A16	6	110752467	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	981283	110752467	60362600	1798	58392											
LAMA4	3910	broad.mit.edu	37	chr6	112463444	112463444	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtcatccatactggttctCgagtgcacttccacagctga	8	12	2	1	rs111587919		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112463444	A	A	112463444	2	1	54	1	0	0	0	0	0	0	0	1	8680	871	31	3		3	LAMA4	6	112463444	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1710977	112463444	58651623	1799	58393											
HS3ST5	222537	broad.mit.edu	37	chr6	114470771	114470771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggggcaggggagggagagCattaggacaaatacctaatg	18	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114470771	A	A	114470771	1	1	54	0	1	0	0	0	0	0	0	0	7435	725	25	3		3	HS3ST5	6	114470771	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2007327	114470771	56644296	1800	58394											
NT5DC1	221294	broad.mit.edu	37	chr6	116506751	116506751	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagattgtgatgtttttctGttggactagtccttttatcc	8	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116506751	C	C	116506751	1	2	54	0	1	0	0	0	0	0	0	0	10785	1392	48	4		4	NT5DC1	6	116506751	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2035980	116506751	54608316	1801	58395											
TSPYL1	7259	broad.mit.edu	37	chr6	116600261	116600261	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggaaggccctgtcggcctGagcattcacagtgtccagtt	12	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116600261	C	C	116600261	3	2	54	1	0	0	0	0	1	0	0	0	16784	1299	45	4	584	4	TSPYL1	6	116600261	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	93510	116600261	54514806	1802	58396											
DSE	29940	broad.mit.edu	37	chr6	116725070	116725070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgggaccatgcctgttttGctcatatgtgtatccctcga	10	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116725070	T	T	116725070	1	4	54	0	1	0	0	0	0	0	0	0	4814	1334	46	3		3	DSE	6	116725070	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	124809	116725070	54389997	1803	58397											
DSE	29940	broad.mit.edu	37	chr6	116752188	116752188	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaatctctggtcttgctcAgggaggtgacggatggctcc	14	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116752188	T	T	116752188	3	4	54	1	0	0	0	0	1	0	0	0	4814	179	7	5	752	5	DSE	6	116752188	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	27118	116752188	54362879	1804	58398											
ROS1	6098	broad.mit.edu	37	chr6	117708171	117708171	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggttcactagctgtttagTaaaaaagaaattaaaagaaa	8	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117708171	A	A	117708171	1	1	54	0	1	0	0	0	0	0	0	0	13642	1653	57	5		5	ROS1	6	117708171	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	955983	117708171	53406896	1805	58399											
SLC35F1	222553	broad.mit.edu	37	chr6	118598583	118598583	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatacatctgataagtgggGgggaaaaaagaaagaaagaa	13	2	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118598583	A	A	118598583	1	1	54	0	1	0	0	0	0	0	0	0	14702	1247	43	4		4	SLC35F1	6	118598583	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	890412	118598583	52516484	1806	58400											
C6orf204	387119	broad.mit.edu	37	chr6	118986367	118986367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtatgctccactgccccCatgtgtaccagctgttcttt	7	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118986367	A	A	118986367	1	1	54	0	1	0	0	0	0	0	0	0	2376	609	21	2		2	C6orf204	6	118986367	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	387784	118986367	52128700	1807	58401											
FAM184A	79632	broad.mit.edu	37	chr6	119444600	119444600	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaacaaaaacagtaggGgcagtgttgggtggttggtt	14	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119444600	T	T	119444600	1	4	54	0	1	0	0	0	0	0	0	0	5557	1247	43	2		2	FAM184A	6	119444600	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	458233	119444600	51670467	1808	58402											
SMPDL3A	10924	broad.mit.edu	37	chr6	123126143	123126143	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactataatgagaaattgatAgatatttttcaaaaatacag	5	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123126143	T	T	123126143	2	4	54	1	0	0	0	0	0	0	0	1	14922	410	15	5		5	SMPDL3A	6	123126143	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3681543	123126143	47988924	1809	58403											
TRDN	10345	broad.mit.edu	37	chr6	123600184	123600184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacgtgtttgtttattgaGcatgcatataacatacgtgg	10	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123600184	T	T	123600184	1	4	54	0	1	0	0	0	0	0	0	0	16592	986	34	3		3	TRDN	6	123600184	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	474041	123600184	47514883	1810	58404											
TRDN	10345	broad.mit.edu	37	chr6	123673597	123673597	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagacttaaaggttattgtCttccgcctgtctgaatccag	8	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123673597	T	T	123673597	1	4	54	0	1	0	0	0	0	0	0	0	16592	928	32	4		4	TRDN	6	123673597	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	73413	123673597	47441470	1811	58405											
TRDN	10345	broad.mit.edu	37	chr6	123683476	123683476	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttattagttactctcCctaaagcatatgtttgagtg	6	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123683476	T	T	123683476	1	4	54	0	1	0	0	0	0	0	0	0	16592	638	22	4		4	TRDN	6	123683476	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9879	123683476	47431591	1812	58406											
PTPRK	5796	broad.mit.edu	37	chr6	128718590	128718590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggctcttagaagtgatcCagtagcacaataatttagct	8	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128718590	A	A	128718590	1	1	54	0	1	0	0	0	0	0	0	0	12913	609	21	2		2	PTPRK	6	128718590	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5035114	128718590	42396477	1813	58407											
ENPP3	5169	broad.mit.edu	37	chr6	131995303	131995303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaattatcattttaggGcttgtatccagagtcacatg	8	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131995303	T	T	131995303	3	4	54	1	0	0	0	0	1	0	0	0	5173	1217	42	3	674	3	ENPP3	6	131995303	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3276713	131995303	39119764	1814	58408											
MOXD1	26002	broad.mit.edu	37	chr6	132673792	132673793	+	Intron	DNP	GT	TC	TC													tatatctgttaagtccatttGttccatggtatagttttaat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	132673793	TC	TC	132673792	1	4	54	0	1	0	0	0	0	0	0	0	9814	1392	48	3		3	MOXD1	6	132673792	Intron	DNP	GT	TCGA-17-Z022-01A-01W-0746-08	678489	132673792	38441275	1815	58409											
VNN1	8876	broad.mit.edu	37	chr6	133020192	133020192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaaggtgcagcccaagCaccttggatgtgttgaactg	12	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133020192	T	T	133020192	1	4	54	0	1	0	0	0	0	0	0	0	17309	725	25	4		4	VNN1	6	133020192	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	346400	133020192	38094875	1816	58410											
C6orf192	116843	broad.mit.edu	37	chr6	133118323	133118323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgattaaagtacacaaatGtgatttctgtgcacatatgt	7	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133118323	T	T	133118323	1	4	54	0	1	0	0	0	0	0	0	0	2372	1392	48	3		3	C6orf192	6	133118323	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	98131	133118323	37996744	1817	58411											
EYA4	2070	broad.mit.edu	37	chr6	133636822	133636822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaatagaagtaaaaatGtaaaccacggagacaaacag	8	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133636822	T	T	133636822	1	4	54	0	1	0	0	0	0	0	0	0	5374	1392	48	3		3	EYA4	6	133636822	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	518499	133636822	37478245	1818	58412											
EYA4	2070	broad.mit.edu	37	chr6	133817554	133817554	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccgagagcatcactgtatAgaacatctaagggcagaact	10	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133817554	G	G	133817554	1	3	54	0	1	0	0	0	0	0	0	0	5374	435	15	5		5	EYA4	6	133817554	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	180732	133817554	37297513	1819	58413											
AHI1	54806	broad.mit.edu	37	chr6	135750970	135750970	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttataaatataatttaattCattacttactctgtgagtac	3	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135750970	T	T	135750970	1	4	54	0	1	0	0	0	0	0	0	0	413	841	29	4		4	AHI1	6	135750970	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1933416	135750970	35364097	1820	58414											
ECT2L	345930	broad.mit.edu	37	chr6	139178314	139178314	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcatttctctttattggaTtgtttctatcaaatcagaaa	4	8	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139178314	C	C	139178314	1	2	54	0	1	0	0	0	0	0	0	0	4942	1508	52	5		5	ECT2L	6	139178314	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3427344	139178314	31936753	1821	58415											
REPS1	85021	broad.mit.edu	37	chr6	139233926	139233926	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacttctggatgtttctcGgcttcatcatcttgttcgtc	9	10	5	0	rs140617448		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139233926	A	A	139233926	2	1	54	1	0	0	0	0	0	0	0	1	13336	1103	39	4		4	REPS1	6	139233926	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	55612	139233926	31881141	1822	58416											
PLAGL1	5325	broad.mit.edu	37	chr6	144364797	144364797	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttgttgtgtctctgctAggctttggtatcaggatgat	11	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144364797	G	G	144364797	1	3	54	0	1	0	0	0	0	0	0	0	12114	435	15	5		5	PLAGL1	6	144364797	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	5130871	144364797	26750270	1823	58417											
STX11	8676	broad.mit.edu	37	chr6	144468845	144468845	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacctttcctccccatcCacaatttactttttcaggca	2	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144468845	A	A	144468845	1	1	54	0	1	0	0	0	0	0	0	0	15455	609	21	2		2	STX11	6	144468845	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	104048	144468845	26646222	1824	58418											
UTRN	7402	broad.mit.edu	37	chr6	145021222	145021222	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attattattatctctcaacaGggcccatttggaggccagcg	9	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145021222	T	T	145021222	5	4	54	1	0	0	0	0	0	0	1	0	17230	1014	35	2	7858	2	UTRN	6	145021222	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	552377	145021222	26093845	1825	58419											
TAB2	23118	broad.mit.edu	37	chr6	149606640	149606640	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccacttgttgcccctactGactgcaaaatctggaagcaa	7	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149606640	T	T	149606640	1	4	54	0	1	0	0	0	0	0	0	0	15615	1305	45	3		3	TAB2	6	149606640	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4585418	149606640	21508427	1826	58420											
MTHFD1L	25902	broad.mit.edu	37	chr6	151358403	151358403	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgctatttttctaaacactGtgtctcacctacttttgcca	4	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151358403	C	C	151358403	1	2	54	0	1	0	0	0	0	0	0	0	10022	1392	48	4		4	MTHFD1L	6	151358403	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1751763	151358403	19756664	1827	58421											
SYNE1	23345	broad.mit.edu	37	chr6	152749376	152749376	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagattctccagcgccgtcTgtctctccttcgccctcctt	7	18	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152749376	A	A	152749376	3	1	54	1	0	0	0	0	1	0	0	0	15564	1580	55	5	21966	5	SYNE1	6	152749376	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1390973	152749376	18365691	1828	58422											
NOX3	50508	broad.mit.edu	37	chr6	155721957	155721957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttggcagccagaactGtgctgttcggacacttgtcc	10	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155721957	T	T	155721957	1	4	54	0	1	0	0	0	0	0	0	0	10652	1392	48	3		3	NOX3	6	155721957	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2972581	155721957	15393110	1829	58423											
TMEM181	57583	broad.mit.edu	37	chr6	159006389	159006389	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaagtcgatggtgtagctCaagatggaaccacgatgtac	11	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159006389	G	G	159006389	3	3	54	1	0	0	0	0	1	0	0	0	16223	827	29	4	742	4	TMEM181	6	159006389	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3284432	159006389	12108678	1830	58424											
LPA	4018	broad.mit.edu	37	chr6	160958713	160958713	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcaccgctccccttgccCaagtcccttgaagactgatt	8	15	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160958713	G	G	160958713	1	3	54	0	1	0	0	0	0	0	0	0	8990	609	21	4		4	LPA	6	160958713	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1952324	160958713	10156354	1831	58425											
LPA	4018	broad.mit.edu	37	chr6	161027641	161027641	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggatccctcgtataacaatAaggggctgccacaggatctg	12	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161027641	G	G	161027641	3	3	54	1	0	0	0	0	1	0	0	0	8990	362	13	5	3561	5	LPA	6	161027641	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	68928	161027641	10087426	1832	58426											
PARK2	5071	broad.mit.edu	37	chr6	162628563	162628563	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagcactctctggaaaggtCatgcagccaaccgattcact	8	13	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162628563	A	A	162628563	1	1	54	0	1	0	0	0	0	0	0	0	11543	841	29	3		3	PARK2	6	162628563	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1600922	162628563	8486504	1833	58427											
PARK2	5071	broad.mit.edu	37	chr6	162844442	162844442	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaccttccctccttccttCccttttcctctttcattttt	0	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162844442	A	A	162844442	1	1	54	0	1	0	0	0	0	0	0	0	11543	870	30	3		3	PARK2	6	162844442	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	215879	162844442	8270625	1834	58428											
PACRG	135138	broad.mit.edu	37	chr6	163250822	163250822	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccggctttaggaaaacaAggtgggagaatgtgtgagag	16	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163250822	T	T	163250822	1	4	54	0	1	0	0	0	0	0	0	0	11464	87	3	5		5	PACRG	6	163250822	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	406380	163250822	7864245	1835	58429											
PACRG	135138	broad.mit.edu	37	chr6	163382516	163382516	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagatccatctcctccTgcatcatgacttttgtaatc	6	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163382516	A	A	163382516	1	1	54	0	1	0	0	0	0	0	0	0	11464	1595	55	5		5	PACRG	6	163382516	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	131694	163382516	7732551	1836	58430											
C6orf118	168090	broad.mit.edu	37	chr6	165715741	165715741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgcttcagattacacaGggtcttcacgcctggcgtct	11	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165715741	T	T	165715741	3	4	54	1	0	0	0	0	1	0	0	0	2346	991	35	2	1371	2	C6orf118	6	165715741	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2333225	165715741	5399326	1837	58431											
C6orf118	168090	broad.mit.edu	37	chr6	165722061	165722061	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactgaccttaccctcgagtCcagcctggtgacagcctgaa	9	14	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165722061	A	A	165722061	1	1	54	0	1	0	0	0	0	0	0	0	2346	870	30	3		3	C6orf118	6	165722061	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6320	165722061	5393006	1838	58432											
PDE10A	10846	broad.mit.edu	37	chr6	165807363	165807363	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggatcagttataaagtcaGgaaaggcctctaggacaggc	12	7	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165807363	A	A	165807363	1	1	54	0	1	0	0	0	0	0	0	0	11724	1015	35	4		4	PDE10A	6	165807363	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	85302	165807363	5307704	1839	58433											
PDE10A	10846	broad.mit.edu	37	chr6	165808693	165808693	+	Frame_Shift_Del	DEL	A	-	-													gatgtcccacaggaccgatgAaccatgtagacaaaaattcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165808693	-	-	165808693	7	5	54	1	0	1	0	1	0	0	0	0	11724	233	9	0	919	0	PDE10A	6	165808693	Frame_Shift_Del	DEL	A	TCGA-17-Z022-01A-01W-0746-08	1330	165808693	5306374	1840	58434											
PDE10A	10846	broad.mit.edu	37	chr6	165870073	165870073	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaacaagaagacatgctgGgatgtggacagtttatcatg	13	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165870073	T	T	165870073	1	4	54	0	1	0	0	0	0	0	0	0	11724	1247	43	2		2	PDE10A	6	165870073	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	61380	165870073	5244994	1841	58435											
T	6862	broad.mit.edu	37	chr6	166571813	166571813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctgcttcacatggaaGgtggcgacacaggtgtccat	12	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166571813	T	T	166571813	3	4	54	1	0	0	0	0	1	0	0	0	15607	1000	35	2	13	2	T	6	166571813	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	701740	166571813	4543254	1842	58436											
SMOC2	64094	broad.mit.edu	37	chr6	169019395	169019395	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccgcatggggtgagcacaGatgcagacaggaagacggtg	16	9	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169019395	A	A	169019395	1	1	54	0	1	0	0	0	0	0	0	0	14916	957	33	4		4	SMOC2	6	169019395	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2447582	169019395	2095672	1843	58437											
MAD1L1	8379	broad.mit.edu	37	chr7	2078097	2078097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcaaagtttcagaggaCaagctgatgctgttaggaga	12	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2078097	A	A	2078097	1	1	54	0	1	0	0	0	0	0	0	0	9235	493	17	3		3	MAD1L1	7	2078097	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08		2078097	157060566	1844	58438											
SNX8	29886	broad.mit.edu	37	chr7	2314980	2314980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcttctctcaccaggcCtttactaaatggagaaaccc	6	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2314980	A	A	2314980	1	1	54	0	1	0	0	0	0	0	0	0	15022	696	24	2		2	SNX8	7	2314980	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	236883	2314980	156823683	1845	58439											
SDK1	221935	broad.mit.edu	37	chr7	3490775	3490775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagatgatgtagggctgaGcgagggtgtgggtatgtaag	21	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3490775	T	T	3490775	1	4	54	0	1	0	0	0	0	0	0	0	14081	986	34	3		3	SDK1	7	3490775	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1175795	3490775	155647888	1846	58440											
SDK1	221935	broad.mit.edu	37	chr7	3638166	3638166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattacagccaggacaccaGcatcagggcagtcaagacca	10	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3638166	T	T	3638166	1	4	54	0	1	0	0	0	0	0	0	0	14081	986	34	3		3	SDK1	7	3638166	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	147391	3638166	155500497	1847	58441											
RNF216	54476	broad.mit.edu	37	chr7	5675877	5675877	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaagagctggctttccactCtgctccctaatccagaaaac	6	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5675877	G	G	5675877	1	3	54	0	1	0	0	0	0	0	0	0	13591	928	32	4		4	RNF216	7	5675877	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2037711	5675877	153462786	1848	58442											
USP42	84132	broad.mit.edu	37	chr7	6189873	6189873	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgatggtgccagctgccaAggccagcctgccctgcactc	11	17	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6189873	G	G	6189873	2	3	54	1	0	0	0	0	0	0	0	1	17200	69	3	5		5	USP42	7	6189873	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	513996	6189873	152948790	1849	58443											
CYTH3	9265	broad.mit.edu	37	chr7	6204489	6204489	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaccgcagggcgactgcctCcctgccacgccttccgcgga	12	19	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6204489	A	A	6204489	1	1	54	0	1	0	0	0	0	0	0	0	4238	870	30	3		3	CYTH3	7	6204489	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14616	6204489	152934174	1850	58444											
ICA1	3382	broad.mit.edu	37	chr7	8253093	8253093	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacactgaagtaaagcagaaActggtttaatccagagagct	10	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8253093	C	C	8253093	1	2	54	0	1	0	0	0	0	0	0	0	7547	58	2	5		5	ICA1	7	8253093	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2048604	8253093	150885570	1851	58445											
NXPH1	30010	broad.mit.edu	37	chr7	8578790	8578790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagatgggtaggtggaaGgggaggagttgatggtggtg	24	0	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8578790	T	T	8578790	1	4	54	0	1	0	0	0	0	0	0	0	10885	1015	35	2		2	NXPH1	7	8578790	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	325697	8578790	150559873	1852	58446											
THSD7A	221981	broad.mit.edu	37	chr7	11468907	11468907	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagggacttgaattaaattCtgcagggaaatgtcacatac	9	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11468907	A	A	11468907	1	1	54	0	1	0	0	0	0	0	0	0	16002	928	32	3		3	THSD7A	7	11468907	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2890117	11468907	147669756	1853	58447											
THSD7A	221981	broad.mit.edu	37	chr7	11486869	11486869	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcttaccaacaagagtgcGctttctggtcctaactgcac	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11486869	C	C	11486869	3	2	54	1	0	0	0	0	1	0	0	0	16002	1087	38	4	2249	4	THSD7A	7	11486869	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	17962	11486869	147651794	1854	58448											
THSD7A	221981	broad.mit.edu	37	chr7	11611365	11611365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacactatttcattgtcttGcagacttcattgtctgagat	6	8	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11611365	T	T	11611365	1	4	54	0	1	0	0	0	0	0	0	0	16002	1334	46	3		3	THSD7A	7	11611365	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	124496	11611365	147527298	1855	58449											
SCIN	85477	broad.mit.edu	37	chr7	12631984	12631984	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggaggataggggtgttatAtggagagtgtgttggtctaa	18	1	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12631984	G	G	12631984	1	3	54	0	1	0	0	0	0	0	0	0	14018	464	16	5		5	SCIN	7	12631984	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1020619	12631984	146506679	1856	58450											
DGKB	1607	broad.mit.edu	37	chr7	14188953	14188953	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagactctctgttaaggttAataatatttcatgagtgact	8	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14188953	G	G	14188953	1	3	54	0	1	0	0	0	0	0	0	0	4506	377	13	5		5	DGKB	7	14188953	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1556969	14188953	144949710	1857	58451											
DGKB	1607	broad.mit.edu	37	chr7	14575820	14575820	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatctcaggaccagatgGcttcacaggtgaattttacc	9	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14575820	C	C	14575820	1	2	54	0	1	0	0	0	0	0	0	0	4506	1218	42	4		4	DGKB	7	14575820	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	386867	14575820	144562843	1858	58452											
DGKB	1607	broad.mit.edu	37	chr7	14776483	14776483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttaaggttctccatgccCattagcggaaatggtgatgg	13	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14776483	A	A	14776483	1	1	54	0	1	0	0	0	0	0	0	0	4506	609	21	2		2	DGKB	7	14776483	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	200663	14776483	144362180	1859	58453											
DGKB	1607	broad.mit.edu	37	chr7	14811364	14811364	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccataccttgaaaatgcccTgcaaagtctcttttgggaaa	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14811364	A	A	14811364	1	1	54	0	1	0	0	0	0	0	0	0	4506	1595	55	5		5	DGKB	7	14811364	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	34881	14811364	144327299	1860	58454											
DGKB	1607	broad.mit.edu	37	chr7	14922238	14922238	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcccttctcccttctgagtCtctattgtctatcattccac	3	15	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14922238	G	G	14922238	1	3	54	0	1	0	0	0	0	0	0	0	4506	928	32	4		4	DGKB	7	14922238	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	110874	14922238	144216425	1861	58455											
ISPD	729920	broad.mit.edu	37	chr7	16158684	16158684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagtctttcttggtgcCccagccccacagccagctcc	10	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16158684	A	A	16158684	1	1	54	0	1	0	0	0	0	0	0	0	7934	638	22	2		2	ISPD	7	16158684	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1236446	16158684	142979979	1862	58456											
HDAC9	9734	broad.mit.edu	37	chr7	18467246	18467246	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attacagtaaccttctcattGatctccttggttttgtcctt	5	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18467246	A	A	18467246	1	1	54	0	1	0	0	0	0	0	0	0	7081	1305	45	4		4	HDAC9	7	18467246	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2308562	18467246	140671417	1863	58457											
HDAC9	9734	broad.mit.edu	37	chr7	18684300	18684300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttttttaacagcaaatgGtttcacagcaacgcattcta	5	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18684300	T	T	18684300	3	4	54	1	0	0	0	0	1	0	0	0	7081	1261	44	3	949	3	HDAC9	7	18684300	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	217054	18684300	140454363	1864	58458											
HDAC9	9734	broad.mit.edu	37	chr7	18814394	18814394	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaggctatttcactttcttAgcatttgtgtgttcactgca	7	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18814394	T	T	18814394	1	4	54	0	1	0	0	0	0	0	0	0	7081	435	15	5		5	HDAC9	7	18814394	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	130094	18814394	140324269	1865	58459											
HDAC9	9734	broad.mit.edu	37	chr7	18904921	18904921	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatattttgaaagtttgacAataggattccttggaagatt	8	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18904921	C	C	18904921	1	2	54	0	1	0	0	0	0	0	0	0	7081	145	5	5		5	HDAC9	7	18904921	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	90527	18904921	140233742	1866	58460											
ITGB8	3696	broad.mit.edu	37	chr7	20420461	20420461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtctgtgaagtaagaCgtttcacatgatcgagtgtt	11	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20420461	A	A	20420461	1	1	54	0	1	0	0	0	0	0	0	0	7971	551	19	3		3	ITGB8	7	20420461	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1515540	20420461	138718202	1867	58461											
ITGB8	3696	broad.mit.edu	37	chr7	20431151	20431151	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgaaaatgttaaaattaAatttttttcattggtaattg	5	3	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20431151	C	C	20431151	1	2	54	0	1	0	0	0	0	0	0	0	7971	29	1	5		5	ITGB8	7	20431151	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	10690	20431151	138707512	1868	58462											
ITGB8	3696	broad.mit.edu	37	chr7	20438417	20438417	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataatgatttaataagcttGactctgctttgttgctgaca	7	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20438417	T	T	20438417	1	4	54	0	1	0	0	0	0	0	0	0	7971	1305	45	3		3	ITGB8	7	20438417	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7266	20438417	138700246	1869	58463											
ABCB5	340273	broad.mit.edu	37	chr7	20683184	20683184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagttggtttggtgaagGgctggaaactcaccctagtg	15	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20683184	T	T	20683184	3	4	54	1	0	0	0	0	1	0	0	0	44	1232	43	2	629	2	ABCB5	7	20683184	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	244767	20683184	138455479	1870	58464											
ABCB5	340273	broad.mit.edu	37	chr7	20739693	20739693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcagggattattttacGgcagagcaggggaaatttta	11	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20739693	T	T	20739693	3	4	54	1	0	0	0	0	1	0	0	0	44	1116	39	1	2383	1	ABCB5	7	20739693	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	56509	20739693	138398970	1871	58465											
ABCB5	340273	broad.mit.edu	37	chr7	20739716	20739716	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagcaggggaaattttaacGatgagattaagacacttggc	12	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20739716	T	T	20739716	2	4	54	1	0	0	0	0	0	0	0	1	44	1045	37	3		3	ABCB5	7	20739716	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23	20739716	138398947	1872	58466											
DNAH11	8701	broad.mit.edu	37	chr7	21679077	21679077	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttcttactcctccctccaGagtcaccttcataattatga	3	15	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21679077	T	T	21679077	1	4	54	0	1	0	0	0	0	0	0	0	4639	957	33	3		3	DNAH11	7	21679077	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	939361	21679077	137459586	1873	58467											
DNAH11	8701	broad.mit.edu	37	chr7	21759820	21759820	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacaacgggtgggaaactgGctgccaaagcgcttaccgaa	13	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21759820	C	C	21759820	1	2	54	0	1	0	0	0	0	0	0	0	4639	1218	42	4		4	DNAH11	7	21759820	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	80743	21759820	137378843	1874	58468											
DNAH11	8701	broad.mit.edu	37	chr7	21932151	21932151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctccagaaagcccggcaCtgtatggcctccacccaaat	7	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21932151	A	A	21932151	3	1	54	1	0	0	0	0	1	0	0	0	4639	564	20	3	12944	3	DNAH11	7	21932151	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	172331	21932151	137206512	1875	58469											
CDCA7L	55536	broad.mit.edu	37	chr7	21942556	21942556	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcctgtgctcagcctcaaGatttcaagctgttttgtaag	8	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21942556	C	C	21942556	1	2	54	0	1	0	0	0	0	0	0	0	3121	957	33	4		4	CDCA7L	7	21942556	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	10405	21942556	137196107	1876	58470											
CDCA7L	55536	broad.mit.edu	37	chr7	21948119	21948119	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcatcactcaaatctgactCcacgacctaataaaataaga	3	11	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21948119	T	T	21948119	3	4	54	1	0	0	0	0	1	0	0	0	3121	864	30	4	1082	4	CDCA7L	7	21948119	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5563	21948119	137190544	1877	58471											
RAPGEF5	9771	broad.mit.edu	37	chr7	22233810	22233810	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaggagtctggtcaaaaaTctccctctaatattaaagta	6	7	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22233810	C	C	22233810	1	2	54	0	1	0	0	0	0	0	0	0	13155	1450	50	5		5	RAPGEF5	7	22233810	5'Flank	SNP	T	TCGA-17-Z022-01A-01W-0746-08	285691	22233810	136904853	1878	58472											
DFNA5	1687	broad.mit.edu	37	chr7	24758575	24758575	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttgctacggaaagagtcCtgactaatgaagacaccacc	8	11	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24758575	T	T	24758575	1	4	54	0	1	0	0	0	0	0	0	0	4494	696	24	4		4	DFNA5	7	24758575	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2524765	24758575	134380088	1879	58473											
CREB5	9586	broad.mit.edu	37	chr7	28602053	28602053	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctccattgcctcaaacccAgtattagaaagaatgacaga	7	10	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28602053	T	T	28602053	1	4	54	0	1	0	0	0	0	0	0	0	3892	203	7	5		5	CREB5	7	28602053	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3843478	28602053	130536610	1880	58474											
CREB5	9586	broad.mit.edu	37	chr7	28610010	28610010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgcataatgcagttggtGgggccatgacggggcccgga	17	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28610010	T	T	28610010	3	4	54	1	0	0	0	0	1	0	0	0	3892	1348	47	2	337	2	CREB5	7	28610010	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7957	28610010	130528653	1881	58475											
CREB5	9586	broad.mit.edu	37	chr7	28610045	28610045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggaactcaccagcttagCagcgctcggctgcccaacca	9	18	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28610045	A	A	28610045	3	1	54	1	0	0	0	0	1	0	0	0	3892	709	25	3	372	3	CREB5	7	28610045	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	35	28610045	130528618	1882	58476											
CPVL	54504	broad.mit.edu	37	chr7	29132418	29132419	+	Intron	DNP	CC	AA	AA													aggtgaccttgttccaaaggCcaagctcagacttcagattt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29132419	AA	AA	29132418	1	1	54	0	1	0	0	0	0	0	0	0	3867	754	26	3		3	CPVL	7	29132418	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	522373	29132418	130006245	1883	58477											
CHN2	1124	broad.mit.edu	37	chr7	29393178	29393178	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tactcaggagactgaggcagGagaatcacttgaacccagga	12	9	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29393178	T	T	29393178	1	4	54	0	1	0	0	0	0	0	0	0	3394	1189	41	3		3	CHN2	7	29393178	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	260760	29393178	129745485	1884	58478											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31124493	31124493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcaccagagctggccaGggcctcagaggccttggtgc	15	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31124493	T	T	31124493	1	4	54	0	1	0	0	0	0	0	0	0	303	1015	35	2		2	ADCYAP1R1	7	31124493	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1731315	31124493	128014170	1885	58479											
CCDC129	223075	broad.mit.edu	37	chr7	31695660	31695661	+	3'UTR	DNP	GG	TT	TT													tatctcaccagtaagtcctaGggcagaccccatctcctaca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31695661	TT	TT	31695660	1	4	54	0	1	0	0	0	0	0	0	0	2790	1015	35	2		2	CCDC129	7	31695660	3'UTR	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	571167	31695660	127443003	1886	58480											
C7orf16	10842	broad.mit.edu	37	chr7	31747019	31747019	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacttgaagattcagacacCttctccccaggagatgtatg	9	10	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31747019	T	T	31747019	1	4	54	0	1	0	0	0	0	0	0	0	2403	696	24	4		4	C7orf16	7	31747019	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	51359	31747019	127391644	1887	58481											
LSM5	23658	broad.mit.edu	37	chr7	32528841	32528841	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagaaaaacctataccaccAccaccttttaaaaggatact	3	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32528841	C	C	32528841	1	2	54	0	1	0	0	0	0	0	0	0	9146	174	6	5		5	LSM5	7	32528841	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	781822	32528841	126609822	1888	58482											
AVL9	23080	broad.mit.edu	37	chr7	32957164	32957164	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgctgtatcctaaacattCaaaattgatcaaagaacagt	5	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32957164	G	G	32957164	1	3	54	0	1	0	0	0	0	0	0	0	1233	841	29	4		4	AVL9	7	32957164	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	428323	32957164	126181499	1889	58483											
FKBP9	11328	broad.mit.edu	37	chr7	33014218	33014218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttctctttccctacccttTgggccttcagctatgacaga	6	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33014218	C	C	33014218	1	2	54	0	1	0	0	0	0	0	0	0	5972	1827	63	5		5	FKBP9	7	33014218	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	57054	33014218	126124445	1890	58484											
RP9	6100	broad.mit.edu	37	chr7	33136018	33136018	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtaccatgtttactgcacCattcctctaacactagagtg	6	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33136018	T	T	33136018	1	4	54	0	1	0	0	0	0	0	0	0	13646	609	21	4		4	RP9	7	33136018	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	121800	33136018	126002645	1891	58485											
BBS9	27241	broad.mit.edu	37	chr7	33404385	33404385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcttgctctgtcatccaGgctggagtgcagtggcatga	15	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33404385	T	T	33404385	1	4	54	0	1	0	0	0	0	0	0	0	1347	1015	35	2		2	BBS9	7	33404385	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	268367	33404385	125734278	1892	58486											
NPSR1	387129	broad.mit.edu	37	chr7	34818043	34818043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaaaataaaaataaaccCtgaatgtaagcacttgtacg	5	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34818043	A	A	34818043	1	1	54	0	1	0	0	0	0	0	0	0	10695	696	24	2		2	NPSR1	7	34818043	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1413658	34818043	124320620	1893	58487											
AOAH	313	broad.mit.edu	37	chr7	36633954	36633954	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagacacttacccaacagtgGagtccagaaatcctgtagca	8	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36633954	A	A	36633954	3	1	54	1	0	0	0	0	1	0	0	0	728	1174	41	4	1179	4	AOAH	7	36633954	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1815911	36633954	122504709	1894	58488											
ELMO1	9844	broad.mit.edu	37	chr7	36934697	36934697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtctttccgagttaagGgctccctgcttccctggtgc	10	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36934697	T	T	36934697	1	4	54	0	1	0	0	0	0	0	0	0	5107	1247	43	2		2	ELMO1	7	36934697	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	300743	36934697	122203966	1895	58489											
ELMO1	9844	broad.mit.edu	37	chr7	37052877	37052877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttagcgctgcgggaatccCctgcctctatccgagatcca	9	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37052877	A	A	37052877	1	1	54	0	1	0	0	0	0	0	0	0	5107	638	22	2		2	ELMO1	7	37052877	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	118180	37052877	122085786	1896	58490											
TXNDC3	51314	broad.mit.edu	37	chr7	37907506	37907506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaacaagacaggtataGctcaagaccaggaattgtgt	10	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37907506	T	T	37907506	1	4	54	0	1	0	0	0	0	0	0	0	16924	986	34	3		3	TXNDC3	7	37907506	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	854629	37907506	121231157	1897	58491											
EPDR1	54749	broad.mit.edu	37	chr7	37989946	37989946	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcggtgtttacccctccaaGcacgtgccagatggcccaac	9	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37989946	C	C	37989946	3	2	54	1	0	0	0	0	1	0	0	0	5205	971	34	4	993	4	EPDR1	7	37989946	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	82440	37989946	121148717	1898	58492											
POU6F2	11281	broad.mit.edu	37	chr7	39411055	39411055	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagtgctgggattacaGgtgtgagccaccacgcccgg	13	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39411055	C	C	39411055	1	2	54	0	1	0	0	0	0	0	0	0	12381	1015	35	4		4	POU6F2	7	39411055	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1421109	39411055	119727608	1899	58493											
POU6F2	11281	broad.mit.edu	37	chr7	39503862	39503862	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagtctgacagccaaactGaaccctggccttttgtatcc	8	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39503862	A	A	39503862	2	1	54	1	0	0	0	0	0	0	0	1	12381	1277	45	4		4	POU6F2	7	39503862	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	92807	39503862	119634801	1900	58494											
C7orf10	79783	broad.mit.edu	37	chr7	40788947	40788947	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccatatctttctttgatgtCgactgaatagatggctgtcc	9	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40788947	T	T	40788947	1	4	54	0	1	0	0	0	0	0	0	0	2401	899	31	4		4	C7orf10	7	40788947	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1285085	40788947	118349716	1901	58495											
INHBA	3624	broad.mit.edu	37	chr7	41729893	41729893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaggtgctcttccgagcGtctactactttttcagagag	10	11	3	1	rs149369067		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41729893	T	T	41729893	3	4	54	1	0	0	0	0	1	0	0	0	7811	1136	40	3	648	3	INHBA	7	41729893	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	940946	41729893	117408770	1902	58496											
INHBA	3624	broad.mit.edu	37	chr7	41735819	41735819	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaaactaggcaacaaaatCaggggagatggaagatgttt	13	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41735819	A	A	41735819	1	1	54	0	1	0	0	0	0	0	0	0	7811	841	29	3		3	INHBA	7	41735819	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5926	41735819	117402844	1903	58497											
GLI3	2737	broad.mit.edu	37	chr7	42152997	42152997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgagggggatgctgaaGgagatgaagccaaggtgaag	19	4	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42152997	T	T	42152997	1	4	54	0	1	0	0	0	0	0	0	0	6503	1015	35	2		2	GLI3	7	42152997	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	417178	42152997	116985666	1904	58498											
GLI3	2737	broad.mit.edu	37	chr7	42153644	42153644	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacatgatccccagtcattGgttaccagtgtgtcacacaa	9	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42153644	A	A	42153644	1	1	54	0	1	0	0	0	0	0	0	0	6503	1363	47	4		4	GLI3	7	42153644	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	647	42153644	116985019	1905	58499											
NUDCD3	23386	broad.mit.edu	37	chr7	44525474	44525474	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtaaacaagttcttaaCattttctgggaaacagtcac	8	7	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44525474	G	G	44525474	1	3	54	0	1	0	0	0	0	0	0	0	10819	493	17	4		4	NUDCD3	7	44525474	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2371830	44525474	114613189	1906	58500											
OGDH	4967	broad.mit.edu	37	chr7	44736068	44736068	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcccaggagcatgtcctgCccctccacgggtctgacgga	12	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44736068	T	T	44736068	2	4	54	1	0	0	0	0	0	0	0	1	10934	747	26	4		4	OGDH	7	44736068	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	210594	44736068	114402595	1907	58501											
IGFBP3	3486	broad.mit.edu	37	chr7	45956787	45956787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggtcttgccctcctcCtttaacaagaggaaaagctc	9	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45956787	A	A	45956787	1	1	54	0	1	0	0	0	0	0	0	0	7650	696	24	2		2	IGFBP3	7	45956787	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1220719	45956787	113181876	1908	58502											
ZPBP	11055	broad.mit.edu	37	chr7	50121488	50121488	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgatggagcatgacataCgctttcactgaaaatacaat	7	7	1	3	rs144577669		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50121488	A	A	50121488	2	1	54	1	0	0	0	0	0	0	0	1	18348	523	19	3		3	ZPBP	7	50121488	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4164701	50121488	109017175	1909	58503											
COBL	23242	broad.mit.edu	37	chr7	51092691	51092691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgccggctctctctcaacCcactcccatgtgaccgcctc	7	20	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51092691	A	A	51092691	1	1	54	0	1	0	0	0	0	0	0	0	3685	638	22	2		2	COBL	7	51092691	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	971203	51092691	108045972	1910	58504											
POM121L12	285877	broad.mit.edu	37	chr7	53103577	53103577	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttccagtgggggcgcccGgtgcccagcacccacctcat	11	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103577	T	T	53103577	2	4	54	1	0	0	0	0	0	0	0	1	12336	1103	39	1		1	POM121L12	7	53103577	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2010886	53103577	106035086	1911	58505											
POM121L12	285877	broad.mit.edu	37	chr7	53104089	53104089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaagccgagcctcggccCctggagcctcagtttttgtg	12	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104089	A	A	53104089	3	1	54	1	0	0	0	0	1	0	0	0	12336	623	22	2	727	2	POM121L12	7	53104089	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	512	53104089	106034574	1912	58506											
EGFR	1956	broad.mit.edu	37	chr7	55107437	55107437	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttccacattttcctgGgctgtcacagtggctgcaaa	8	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55107437	T	T	55107437	1	4	54	0	1	0	0	0	0	0	0	0	5007	1247	43	2		2	EGFR	7	55107437	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2003348	55107437	104031226	1913	58507											
EGFR	1956	broad.mit.edu	37	chr7	55234663	55234663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggagtcacaatggtgGtgatgagggtggtgatgatg	20	2	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55234663	T	T	55234663	1	4	54	0	1	0	0	0	0	0	0	0	5007	1276	44	3		3	EGFR	7	55234663	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	127226	55234663	103904000	1914	58508											
CCT6A	908	broad.mit.edu	37	chr7	56126352	56126352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatgctctttcaaaagaaGgcatagttgctctgcgcaga	10	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56126352	T	T	56126352	3	4	54	1	0	0	0	0	1	0	0	0	2987	1000	35	2	955	2	CCT6A	7	56126352	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	891689	56126352	103012311	1915	58509											
ZNF679	168417	broad.mit.edu	37	chr7	63726980	63726980	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcatactggagagaaaccCtacacatgtgaagaatgtgg	10	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63726980	G	G	63726980	2	3	54	1	0	0	0	0	0	0	0	1	18213	668	24	4		4	ZNF679	7	63726980	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7600628	63726980	95411683	1916	58510											
AUTS2	26053	broad.mit.edu	37	chr7	70107042	70107042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattctgcaatctacctgcGgtgcatgtaagttctaattt	8	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70107042	T	T	70107042	1	4	54	0	1	0	0	0	0	0	0	0	1230	1131	39	1		1	AUTS2	7	70107042	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6380062	70107042	89031621	1917	58511											
WBSCR17	64409	broad.mit.edu	37	chr7	70875666	70875666	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactgaaagtgcgggattgaGacagaattctgtaatgttct	11	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70875666	C	C	70875666	1	2	54	0	1	0	0	0	0	0	0	0	17391	957	33	4		4	WBSCR17	7	70875666	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	768624	70875666	88262997	1918	58512											
WBSCR17	64409	broad.mit.edu	37	chr7	71134905	71134905	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactccacctgtgccccactCtggccagagctccacagtca	8	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71134905	G	G	71134905	1	3	54	0	1	0	0	0	0	0	0	0	17391	928	32	4		4	WBSCR17	7	71134905	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	259239	71134905	88003758	1919	58513											
CALN1	83698	broad.mit.edu	37	chr7	71499031	71499031	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggtttgcgacaccaaaggGaccatgaaactaattaggaa	10	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71499031	T	T	71499031	1	4	54	0	1	0	0	0	0	0	0	0	2617	1189	41	3		3	CALN1	7	71499031	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	364126	71499031	87639632	1920	58514											
TYW1B	441250	broad.mit.edu	37	chr7	72267354	72267354	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggactacacagtaataaaGaaatactaaatgttaaccaa	5	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72267354	C	C	72267354	1	2	54	0	1	0	0	0	0	0	0	0	16945	957	33	4		4	TYW1B	7	72267354	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	768323	72267354	86871309	1921	58515											
NSUN5	55695	broad.mit.edu	37	chr7	72722405	72722405	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaccgtcggggttcacttCcccgtccctcccctcccctc	7	22	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72722405	A	A	72722405	1	1	54	0	1	0	0	0	0	0	0	0	10776	870	30	3		3	NSUN5	7	72722405	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	455051	72722405	86416258	1922	58516											
BAZ1B	9031	broad.mit.edu	37	chr7	72892280	72892280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcttcactagagagaagaCgagctgttttggagataaca	10	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72892280	A	A	72892280	3	1	54	1	0	0	0	0	1	0	0	0	1335	536	19	3	2992	3	BAZ1B	7	72892280	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	169875	72892280	86246383	1923	58517											
TBL2	26608	broad.mit.edu	37	chr7	72988716	72988716	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggtaccccacgtaccttCagagctgcagccaggaggcg	12	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72988716	G	G	72988716	2	3	54	1	0	0	0	0	0	0	0	1	15764	813	29	4		4	TBL2	7	72988716	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	96436	72988716	86149947	1924	58518											
WBSCR22	114049	broad.mit.edu	37	chr7	73100937	73100937	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcacccagaactcctttacCatgtccacttgtgtttctgc	5	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73100937	G	G	73100937	1	3	54	0	1	0	0	0	0	0	0	0	17392	609	21	4		4	WBSCR22	7	73100937	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112221	73100937	86037726	1925	58519											
WBSCR27	155368	broad.mit.edu	37	chr7	73249192	73249192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaggtagccagctcccagCggtccacaggcggtccacag	14	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73249192	T	T	73249192	3	4	54	1	0	0	0	0	1	0	0	0	17393	768	27	4	122	4	WBSCR27	7	73249192	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	148255	73249192	85889471	1926	58520											
CLIP2	7461	broad.mit.edu	37	chr7	73753334	73753334	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgggggaccgcgtgctGgtgagtgcgggcagtactgg	20	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73753334	T	T	73753334	2	4	54	1	0	0	0	0	0	0	0	1	3565	1362	47	2		2	CLIP2	7	73753334	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	504142	73753334	85385329	1927	58521											
HIP1	3092	broad.mit.edu	37	chr7	75191316	75191316	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctctttggttagtgttttGaggcagaccatggcttaact	10	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75191316	C	C	75191316	1	2	54	0	1	0	0	0	0	0	0	0	7181	1305	45	4		4	HIP1	7	75191316	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1437982	75191316	83947347	1928	58522											
RSBN1L	222194	broad.mit.edu	37	chr7	77398052	77398052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgatggtcccatcatGtgggttcgtccaggagaaca	13	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77398052	T	T	77398052	3	4	54	1	0	0	0	0	1	0	0	0	13808	1377	48	3	1575	3	RSBN1L	7	77398052	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2206736	77398052	81740611	1929	58523											
MAGI2	9863	broad.mit.edu	37	chr7	77789355	77789355	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacttacttatagtggatccAgactcaggcctgttcaggga	10	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77789355	T	T	77789355	2	4	54	1	0	0	0	0	0	0	0	1	9283	175	7	5		5	MAGI2	7	77789355	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	391303	77789355	81349308	1930	58524											
MAGI2	9863	broad.mit.edu	37	chr7	77824078	77824078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggctctgctcttgaaaCacttttgaaactcagaatat	7	9	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77824078	A	A	77824078	1	1	54	0	1	0	0	0	0	0	0	0	9283	493	17	3		3	MAGI2	7	77824078	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	34723	77824078	81314585	1931	58525											
MAGI2	9863	broad.mit.edu	37	chr7	78755084	78755084	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccacaaaatcaagatggCtggggtggttccagtggcag	14	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78755084	T	T	78755084	1	4	54	0	1	0	0	0	0	0	0	0	9283	812	28	4		4	MAGI2	7	78755084	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	931006	78755084	80383579	1932	58526											
HGF	3082	broad.mit.edu	37	chr7	81332038	81332038	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaaccattctcattttAtgttgctcacaaacaagtgg	6	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81332038	G	G	81332038	2	3	54	1	0	0	0	0	0	0	0	1	7152	446	16	5		5	HGF	7	81332038	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2576954	81332038	77806625	1933	58527											
HGF	3082	broad.mit.edu	37	chr7	81346623	81346623	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtccatgagcatcatcatCtggatttcggcagtaattct	10	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81346623	A	A	81346623	3	1	54	1	0	0	0	0	1	0	0	0	7152	913	32	3	888	3	HGF	7	81346623	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14585	81346623	77792040	1934	58528											
HGF	3082	broad.mit.edu	37	chr7	81350207	81350207	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtccaatgaatatcaaggCagataaaacaaaaaggtttt	7	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81350207	T	T	81350207	1	4	54	0	1	0	0	0	0	0	0	0	7152	725	25	4		4	HGF	7	81350207	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3584	81350207	77788456	1935	58529											
HGF	3082	broad.mit.edu	37	chr7	81366693	81366693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataggtaaatactaattaGtgtactcttaaggggaccat	8	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81366693	T	T	81366693	1	4	54	0	1	0	0	0	0	0	0	0	7152	1044	36	3		3	HGF	7	81366693	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16486	81366693	77771970	1936	58530											
HGF	3082	broad.mit.edu	37	chr7	81386722	81386722	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaattaactcttgtaaacTatttcaaataacattgaaat	3	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81386722	C	C	81386722	1	2	54	0	1	0	0	0	0	0	0	0	7152	1537	53	5		5	HGF	7	81386722	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	20029	81386722	77751941	1937	58531											
HGF	3082	broad.mit.edu	37	chr7	81388036	81388036	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatagaggtcaaattcatgGccaaattcttttttcactcc	5	10	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81388036	A	A	81388036	2	1	54	1	0	0	0	0	0	0	0	1	7152	1190	42	4		4	HGF	7	81388036	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1314	81388036	77750627	1938	58532											
CACNA2D1	781	broad.mit.edu	37	chr7	81985731	81985731	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggataaatcacactaatattCtaatatcacctttcacaact	2	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81985731	G	G	81985731	1	3	54	0	1	0	0	0	0	0	0	0	2574	928	32	4		4	CACNA2D1	7	81985731	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	597695	81985731	77152932	1939	58533											
PCLO	27445	broad.mit.edu	37	chr7	82579192	82579192	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactttgtgtgtctgaatctGcttctgtttgacatcctaaa	8	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82579192	A	A	82579192	3	1	54	1	0	0	0	0	1	0	0	0	11677	1319	46	4	4813	4	PCLO	7	82579192	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	593461	82579192	76559471	1940	58534											
PCLO	27445	broad.mit.edu	37	chr7	82581895	82581895	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaaaggtcactgtctcagTggccagagatacaggagtca	12	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82581895	A	A	82581895	3	1	54	1	0	0	0	0	1	0	0	0	11677	1696	59	5	7155	5	PCLO	7	82581895	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2703	82581895	76556768	1941	58535											
PCLO	27445	broad.mit.edu	37	chr7	82748268	82748268	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggggagtgactctttcccCttgcagaaaggagagggaaa	14	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82748268	A	A	82748268	1	1	54	0	1	0	0	0	0	0	0	0	11677	696	24	2		2	PCLO	7	82748268	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	166373	82748268	76390395	1942	58536											
SEMA3D	223117	broad.mit.edu	37	chr7	84628850	84628850	+	Frame_Shift_Del	DEL	C	-	-													gcatgtgcttccactttgggCcccccttgtttctctgtctc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84628850	-	-	84628850	7	5	54	1	0	1	0	1	0	0	0	0	14140	739	26	0	97	0	SEMA3D	7	84628850	Frame_Shift_Del	DEL	C	TCGA-17-Z022-01A-01W-0746-08	1880582	84628850	74509813	1943	58537											
SEMA3D	223117	broad.mit.edu	37	chr7	84671400	84671400	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctcaggtaaaattaatcaGgcatttggagccaaagggaa	11	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84671400	C	C	84671400	1	2	54	0	1	0	0	0	0	0	0	0	14140	1015	35	4		4	SEMA3D	7	84671400	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	42550	84671400	74467263	1944	58538											
SEMA3D	223117	broad.mit.edu	37	chr7	84727060	84727060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaagcaaaacaaaacGggagaagaagagagatgaaa	10	4	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84727060	T	T	84727060	1	4	54	0	1	0	0	0	0	0	0	0	14140	1131	39	1		1	SEMA3D	7	84727060	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	55660	84727060	74411603	1945	58539											
GRM3	2913	broad.mit.edu	37	chr7	86442866	86442866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgatcatctgagttcacCttagcatgctagcttggttg	10	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86442866	A	A	86442866	1	1	54	0	1	0	0	0	0	0	0	0	6864	696	24	2		2	GRM3	7	86442866	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1715806	86442866	72695797	1946	58540											
KIAA1324L	222223	broad.mit.edu	37	chr7	86509994	86509994	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttacagttaaaattgggtgGcagatataaaacaagtagca	9	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86509994	A	A	86509994	1	1	54	0	1	0	0	0	0	0	0	0	8294	1218	42	4		4	KIAA1324L	7	86509994	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	67128	86509994	72628669	1947	58541											
CROT	54677	broad.mit.edu	37	chr7	86991234	86991234	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggtagcctactatgacgtGatggaacatacacttttgaa	10	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86991234	A	A	86991234	1	1	54	0	1	0	0	0	0	0	0	0	3926	1305	45	4		4	CROT	7	86991234	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	481240	86991234	72147429	1948	58542											
ABCB1	5243	broad.mit.edu	37	chr7	87162113	87162113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttcactttactctgtGgattcgccttgaattctttc	6	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87162113	T	T	87162113	1	4	54	0	1	0	0	0	0	0	0	0	40	1363	47	2		2	ABCB1	7	87162113	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	170879	87162113	71976550	1949	58543											
ABCB1	5243	broad.mit.edu	37	chr7	87173487	87173487	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcaaatgctggttgcagGcctccatttataatggcaca	9	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87173487	T	T	87173487	2	4	54	1	0	0	0	0	0	0	0	1	40	1190	42	3		3	ABCB1	7	87173487	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11374	87173487	71965176	1950	58544											
ABCB1	5243	broad.mit.edu	37	chr7	87226482	87226482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaccaccaaactataaGgtgcaacctcagatttctga	6	13	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87226482	T	T	87226482	1	4	54	0	1	0	0	0	0	0	0	0	40	1015	35	2		2	ABCB1	7	87226482	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	52995	87226482	71912181	1951	58545											
RUNDC3B	154661	broad.mit.edu	37	chr7	87370884	87370884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactatacaccatatttgaaGtatatccaaaggtatgtgac	7	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87370884	T	T	87370884	3	4	54	1	0	0	0	0	1	0	0	0	13856	1020	36	3	695	3	RUNDC3B	7	87370884	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	144402	87370884	71767779	1952	58546											
RUNDC3B	154661	broad.mit.edu	37	chr7	87445641	87445641	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatctatattttggttgcaGatgattgccagagaataata	8	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87445641	C	C	87445641	1	2	54	0	1	0	0	0	0	0	0	0	13856	957	33	4		4	RUNDC3B	7	87445641	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	74757	87445641	71693022	1953	58547											
ZNF804B	219578	broad.mit.edu	37	chr7	88677189	88677189	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagcatcaggcgattggttGatctcagtggctaaatcctt	11	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88677189	C	C	88677189	1	2	54	0	1	0	0	0	0	0	0	0	18300	1305	45	4		4	ZNF804B	7	88677189	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1231548	88677189	70461474	1954	58548											
ZNF804B	219578	broad.mit.edu	37	chr7	88963617	88963617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgtggcatctaaaccaCtaccttttctccacgttcaa	4	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88963617	A	A	88963617	3	1	54	1	0	0	0	0	1	0	0	0	18300	564	20	3	1335	3	ZNF804B	7	88963617	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	286428	88963617	70175046	1955	58549											
CDK14	5218	broad.mit.edu	37	chr7	90437815	90437815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaacaactggtaacagcCactgcaaaaacatgccaagt	8	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90437815	A	A	90437815	1	1	54	0	1	0	0	0	0	0	0	0	3160	609	21	2		2	CDK14	7	90437815	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1474198	90437815	68700848	1956	58550											
CDK14	5218	broad.mit.edu	37	chr7	90456379	90456379	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcattgctgcccaaccccCcaccccacccctgctgcctg	5	22	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90456379	T	T	90456379	1	4	54	0	1	0	0	0	0	0	0	0	3160	638	22	4		4	CDK14	7	90456379	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18564	90456379	68682284	1957	58551											
CDK14	5218	broad.mit.edu	37	chr7	90463858	90463858	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttgttcgtttgcagcatAagttttaaaagagtactttg	9	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90463858	C	C	90463858	1	2	54	0	1	0	0	0	0	0	0	0	3160	377	13	5		5	CDK14	7	90463858	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7479	90463858	68674805	1958	58552											
CDK14	5218	broad.mit.edu	37	chr7	90640116	90640116	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctttccctccttccttcTttccttccttccttccttcc	0	20	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90640116	C	C	90640116	1	2	54	0	1	0	0	0	0	0	0	0	3160	1624	56	5		5	CDK14	7	90640116	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	176258	90640116	68498547	1959	58553											
AKAP9	10142	broad.mit.edu	37	chr7	91632045	91632045	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggttgttgaaaaggatacAacagaactcatggaaaaact	10	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91632045	C	C	91632045	2	2	54	1	0	0	0	0	0	0	0	1	459	117	5	5		5	AKAP9	7	91632045	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	991929	91632045	67506618	1960	58554											
CDK6	1021	broad.mit.edu	37	chr7	92247458	92247458	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttgggcagattttgaatgAaaagcctgcctgggaagggc	16	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92247458	G	G	92247458	2	3	54	1	0	0	0	0	0	0	0	1	3178	243	9	5		5	CDK6	7	92247458	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	615413	92247458	66891205	1961	58555											
GNGT1	2792	broad.mit.edu	37	chr7	93350058	93350058	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcaatatgtataactaaTattatttttacattattgag	4	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93350058	G	G	93350058	1	3	54	0	1	0	0	0	0	0	0	0	6597	1421	49	5		5	GNGT1	7	93350058	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1102600	93350058	65788605	1962	58556											
COL1A2	1278	broad.mit.edu	37	chr7	94043383	94043383	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgaagcaaagaaaggtgCatttttttcaaacaaacttt	7	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94043383	T	T	94043383	1	4	54	0	1	0	0	0	0	0	0	0	3710	725	25	4		4	COL1A2	7	94043383	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	693325	94043383	65095280	1963	58557											
COL1A2	1278	broad.mit.edu	37	chr7	94056964	94056964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtccccctggccctcCtggacctccaggtgtaagcg	11	18	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94056964	T	T	94056964	3	4	54	1	0	0	0	0	1	0	0	0	3710	681	24	4	3487	4	COL1A2	7	94056964	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13581	94056964	65081699	1964	58558											
PEG10	23089	broad.mit.edu	37	chr7	94293271	94293271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgcccgttgggcctcaGcaaagctggagcgctcccac	13	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94293271	T	T	94293271	3	4	54	1	0	0	0	0	1	0	0	0	11813	971	34	3	637	3	PEG10	7	94293271	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	236307	94293271	64845392	1965	58559											
ASB4	51666	broad.mit.edu	37	chr7	95143493	95143493	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttgaatacaggtctctcAccctctcttaacgtcatttc	4	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95143493	T	T	95143493	1	4	54	0	1	0	0	0	0	0	0	0	1029	174	6	5		5	ASB4	7	95143493	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	850222	95143493	63995170	1966	58560											
DYNC1I1	1780	broad.mit.edu	37	chr7	95616674	95616674	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtgctaggtaccaaacaaGaagccagattgttctgtcca	9	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95616674	T	T	95616674	1	4	54	0	1	0	0	0	0	0	0	0	4882	957	33	3		3	DYNC1I1	7	95616674	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	473181	95616674	63521989	1967	58561											
DYNC1I1	1780	broad.mit.edu	37	chr7	95686618	95686618	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaactgggccttttctacgTctgagtcctaatgaagattc	9	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95686618	A	A	95686618	1	1	54	0	1	0	0	0	0	0	0	0	4882	1682	58	5		5	DYNC1I1	7	95686618	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	69944	95686618	63452045	1968	58562											
SLC25A13	10165	broad.mit.edu	37	chr7	95942838	95942838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaacagaaaaccaaataTcacatgttctcacttataag	5	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95942838	C	C	95942838	1	2	54	0	1	0	0	0	0	0	0	0	14589	1450	50	5		5	SLC25A13	7	95942838	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	256220	95942838	63195825	1969	58563											
DLX5	1749	broad.mit.edu	37	chr7	96650308	96650308	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctggagctgggactgtgctCcgggggcatctccccgtttt	15	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96650308	T	T	96650308	3	4	54	1	0	0	0	0	1	0	0	0	4614	864	30	4	263	4	DLX5	7	96650308	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	707470	96650308	62488355	1970	58564											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97941391	97941391	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacacgattgaaatctggaaGagaaaactggctcctaccac	8	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97941391	A	A	97941391	1	1	54	0	1	0	0	0	0	0	0	0	1307	957	33	4		4	BAIAP2L1	7	97941391	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1291083	97941391	61197272	1971	58565											
TRRAP	8295	broad.mit.edu	37	chr7	98574418	98574418	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgcgcctcagtttgttaAttacctcttccctgccagtg	10	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98574418	T	T	98574418	1	4	54	0	1	0	0	0	0	0	0	0	16726	116	4	5		5	TRRAP	7	98574418	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	633027	98574418	60564245	1972	58566											
ARPC1A	10552	broad.mit.edu	37	chr7	98951633	98951633	+	Missense_Mutation	SNP	G	T	T													gatgtcagagtttggtggcaGtggcactggtggctgggtcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98951633	T	T	98951633	3	4	54	1	0	0	0	0	1	0	0	0	973	1029	36	3	620	3	ARPC1A	7	98951633	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	377215	98951633	60187030	1973	58567	276	2									
ARPC1A	10552	broad.mit.edu	37	chr7	98951635	98951635	+	Missense_Mutation	SNP	G	T	T													tgtcagagtttggtggcagtGgcactggtggctgggtccac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98951635	T	T	98951635	3	4	54	1	0	0	0	0	1	0	0	0	973	1348	47	2	622	2	ARPC1A	7	98951635	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2	98951635	60187028	1974	58568	276	2									
PTCD1	26024	broad.mit.edu	37	chr7	99058103	99058103	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggtctcgaaaaaagcagTaacgtggcggacaggaaaga	14	6	1	1	rs73711284	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99058103	C	C	99058103	1	2	54	0	1	0	0	0	0	0	0	0	12833	1653	57	5		5	PTCD1	7	99058103	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	106468	99058103	60080560	1975	58569											
ZNF498	221785	broad.mit.edu	37	chr7	99226655	99226655	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtaaaaagacatggaggtgGaaataaggaaaaagaagtaa	12	1	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99226655	C	C	99226655	1	2	54	0	1	0	0	0	0	0	0	0	18074	1189	41	4		4	ZNF498	7	99226655	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	168552	99226655	59912008	1976	58570											
ZNF498	221785	broad.mit.edu	37	chr7	99226890	99226890	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtggcactgacatcagaGaggtttggggaagcctctct	14	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99226890	A	A	99226890	2	1	54	1	0	0	0	0	0	0	0	1	18074	933	33	4		4	ZNF498	7	99226890	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	235	99226890	59911773	1977	58571											
ZNF498	221785	broad.mit.edu	37	chr7	99230971	99230971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctagatctgcttctttcGttagttctgtaaatgcttca	7	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99230971	T	T	99230971	1	4	54	0	1	0	0	0	0	0	0	0	18074	1160	40	3		3	ZNF498	7	99230971	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4081	99230971	59907692	1978	58572											
ZCWPW1	55063	broad.mit.edu	37	chr7	100003988	100003988	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccacaaccaaaaattatctCgcccgaaatgccaatagtgc	5	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100003988	G	G	100003988	1	3	54	0	1	0	0	0	0	0	0	0	17723	899	31	4		4	ZCWPW1	7	100003988	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	773017	100003988	59134675	1979	58573											
PCOLCE	5118	broad.mit.edu	37	chr7	100199976	100199976	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacacacccaaggctgccccAtctggcgctgattatcctgc	8	17	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100199976	T	T	100199976	1	4	54	0	1	0	0	0	0	0	0	0	11688	232	8	5		5	PCOLCE	7	100199976	5'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	195988	100199976	58938687	1980	58574											
ACTL6B	51412	broad.mit.edu	37	chr7	100252740	100252740	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcggaagcactcccagtcctCgactggggccagaagagcag	13	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100252740	T	T	100252740	3	4	54	1	0	0	0	0	1	0	0	0	199	893	31	4	1053	4	ACTL6B	7	100252740	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	52764	100252740	58885923	1981	58575											
ZAN	7455	broad.mit.edu	37	chr7	100336203	100336203	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatcaggaaagccaggcGtggggcctgatggcgacttc	16	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100336203	A	A	100336203	3	1	54	1	0	0	0	0	1	0	0	0	17640	1145	40	4	755	4	ZAN	7	100336203	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	83463	100336203	58802460	1982	58576											
ZAN	7455	broad.mit.edu	37	chr7	100361492	100361492	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgcagagcagcatgtcGgggccagggttctgtggacg	16	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100361492	T	T	100361492	2	4	54	1	0	0	0	0	0	0	0	1	17640	1103	39	1		1	ZAN	7	100361492	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	25289	100361492	58777171	1983	58577											
MUC17	140453	broad.mit.edu	37	chr7	100676089	100676089	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcagcaccactccagtGgccagttctgaggctagcaa	10	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100676089	A	A	100676089	2	1	54	1	0	0	0	0	0	0	0	1	10068	1335	47	4		4	MUC17	7	100676089	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	314597	100676089	58462574	1984	58578											
MUC17	140453	broad.mit.edu	37	chr7	100696130	100696130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctctgttcatcccctcGgggtgccttgctttatgccc	8	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100696130	T	T	100696130	1	4	54	0	1	0	0	0	0	0	0	0	10068	1131	39	1		1	MUC17	7	100696130	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	20041	100696130	58442533	1985	58579											
PLOD3	8985	broad.mit.edu	37	chr7	100855548	100855548	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcacatggccatgtccctGgcctcgcctgggctcagagc	12	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100855548	A	A	100855548	2	1	54	1	0	0	0	0	0	0	0	1	12198	1335	47	4		4	PLOD3	7	100855548	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	159418	100855548	58283115	1986	58580											
LRWD1	222229	broad.mit.edu	37	chr7	102110022	102110022	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccccaccccctcttcagcGgcctcctatgacaagcggat	7	18	2	1	rs140653534		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102110022	A	A	102110022	2	1	54	1	0	0	0	0	0	0	0	1	9134	1130	39	4		4	LRWD1	7	102110022	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1254474	102110022	57028641	1987	58581											
FBXL13	222235	broad.mit.edu	37	chr7	102669029	102669029	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatacaaaaagtaattgcTactatgtaagaatttacttt	6	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102669029	A	A	102669029	1	1	54	0	1	0	0	0	0	0	0	0	5766	1537	53	5		5	FBXL13	7	102669029	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	559007	102669029	56469634	1988	58582											
SLC26A5	375611	broad.mit.edu	37	chr7	103021548	103021548	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cataccacacatatacacatCatacacactgcatatatact	1	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103021548	A	A	103021548	1	1	54	0	1	0	0	0	0	0	0	0	14634	841	29	3		3	SLC26A5	7	103021548	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	352519	103021548	56117115	1989	58583											
RELN	5649	broad.mit.edu	37	chr7	103230224	103230224	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accagcatcatgagagtactGaagaagaactggagcagtac	11	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103230224	C	C	103230224	3	2	54	1	0	0	0	0	1	0	0	0	13328	1299	45	4	6570	4	RELN	7	103230224	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	208676	103230224	55908439	1990	58584											
RELN	5649	broad.mit.edu	37	chr7	103251085	103251085	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcaatagagacagaattgAatcaaaagggatagtcaaag	9	4	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103251085	T	T	103251085	1	4	54	0	1	0	0	0	0	0	0	0	13328	261	9	5		5	RELN	7	103251085	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	20861	103251085	55887578	1991	58585											
RELN	5649	broad.mit.edu	37	chr7	103292412	103292412	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actaaagtctgaccagctttCaaagggcaatcagttaaatt	7	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103292412	G	G	103292412	1	3	54	0	1	0	0	0	0	0	0	0	13328	841	29	4		4	RELN	7	103292412	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	41327	103292412	55846251	1992	58586											
RELN	5649	broad.mit.edu	37	chr7	103383713	103383713	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagttcctgaaggaggtacTaaacatggaaaggaacaacc	11	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103383713	C	C	103383713	1	2	54	0	1	0	0	0	0	0	0	0	13328	1537	53	5		5	RELN	7	103383713	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	91301	103383713	55754950	1993	58587											
RELN	5649	broad.mit.edu	37	chr7	103389733	103389733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcagtctacattaagccCagttccatagcttaacaagt	6	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103389733	A	A	103389733	1	1	54	0	1	0	0	0	0	0	0	0	13328	609	21	2		2	RELN	7	103389733	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6020	103389733	55748930	1994	58588											
RELN	5649	broad.mit.edu	37	chr7	103488947	103488947	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaacagctacttcccccCgaatcaacagaactttcacc	3	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103488947	A	A	103488947	1	1	54	0	1	0	0	0	0	0	0	0	13328	667	23	1		1	RELN	7	103488947	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	99214	103488947	55649716	1995	58589											
LHFPL3	375612	broad.mit.edu	37	chr7	104171817	104171817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaaataagagttggcaaGgaccggtgtgtctgaactga	13	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104171817	T	T	104171817	1	4	54	0	1	0	0	0	0	0	0	0	8838	1015	35	2		2	LHFPL3	7	104171817	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	682870	104171817	54966846	1996	58590											
LHFPL3	375612	broad.mit.edu	37	chr7	104308262	104308262	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctaacagactttctggctGaggatgggggtactggtgga	15	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104308262	A	A	104308262	1	1	54	0	1	0	0	0	0	0	0	0	8838	1305	45	4		4	LHFPL3	7	104308262	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	136445	104308262	54830401	1997	58591											
LHFPL3	375612	broad.mit.edu	37	chr7	104457345	104457345	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctgcctcatgaaccttgTgtcttctgggtttccataat	8	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104457345	G	G	104457345	1	3	54	0	1	0	0	0	0	0	0	0	8838	1711	59	5		5	LHFPL3	7	104457345	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	149083	104457345	54681318	1998	58592											
SRPK2	6733	broad.mit.edu	37	chr7	104844010	104844010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccccttgtccattcccCcaacaaattactacacagcc	2	19	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104844010	A	A	104844010	1	1	54	0	1	0	0	0	0	0	0	0	15278	638	22	2		2	SRPK2	7	104844010	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	386665	104844010	54294653	1999	58593											
ATXN7L1	222255	broad.mit.edu	37	chr7	105505390	105505390	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgcccagccccagattcaCtcttgaaactaacagtacag	7	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105505390	G	G	105505390	1	3	54	0	1	0	0	0	0	0	0	0	1220	580	20	4		4	ATXN7L1	7	105505390	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	661380	105505390	53633273	2000	58594											
PIK3CG	5294	broad.mit.edu	37	chr7	106545619	106545619	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgatcatcctgttctcCatgatgctgatgacaggaat	8	10	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106545619	A	A	106545619	2	1	54	1	0	0	0	0	0	0	0	1	12011	581	21	2		2	PIK3CG	7	106545619	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1040229	106545619	52593044	2001	58595											
COG5	10466	broad.mit.edu	37	chr7	107090584	107090584	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatatgggattgctatggTgcctccctctggaaaacact	9	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107090584	A	A	107090584	1	1	54	0	1	0	0	0	0	0	0	0	3693	1711	59	5		5	COG5	7	107090584	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	544965	107090584	52048079	2002	58596											
SLC26A4	5172	broad.mit.edu	37	chr7	107314550	107314550	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattttttaaaccctatgcaGacacattgaacatttgtgat	5	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107314550	C	C	107314550	1	2	54	0	1	0	0	0	0	0	0	0	14633	957	33	4		4	SLC26A4	7	107314550	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	223966	107314550	51824113	2003	58597											
LAMB4	22798	broad.mit.edu	37	chr7	107684183	107684183	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaactagtcctaatataTatttttaaattacctaacaa	1	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107684183	C	C	107684183	1	2	54	0	1	0	0	0	0	0	0	0	8685	1421	49	5		5	LAMB4	7	107684183	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	369633	107684183	51454480	2004	58598											
LAMB4	22798	broad.mit.edu	37	chr7	107703433	107703433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacgccggaagcatggcagGagcatcctgtgatgacaaaa	12	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107703433	T	T	107703433	3	4	54	1	0	0	0	0	1	0	0	0	8685	1174	41	3	2265	3	LAMB4	7	107703433	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19250	107703433	51435230	2005	58599											
NRCAM	4897	broad.mit.edu	37	chr7	107825064	107825064	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcgatgatgaattctggtCacgacacacacacaccaaac	6	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107825064	A	A	107825064	1	1	54	0	1	0	0	0	0	0	0	0	10739	841	29	3		3	NRCAM	7	107825064	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	121631	107825064	51313599	2006	58600											
IMMP2L	83943	broad.mit.edu	37	chr7	110555310	110555310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtgcacgcgcgtgcgtgCacgcacacacacacaaatat	9	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110555310	A	A	110555310	1	1	54	0	1	0	0	0	0	0	0	0	7787	725	25	3		3	IMMP2L	7	110555310	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2730246	110555310	48583353	2007	58601											
LRRN3	54674	broad.mit.edu	37	chr7	110763980	110763980	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgaacatgaacaaaacCaacattcgattcatggagcc	8	9	1	2	rs142935034		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763980	A	A	110763980	2	1	54	1	0	0	0	0	0	0	0	1	9123	581	21	2		2	LRRN3	7	110763980	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	208670	110763980	48374683	2008	58602											
IMMP2L	83943	broad.mit.edu	37	chr7	110903735	110903735	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcactagagagtcactgtTactagggaagaggtccatga	11	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110903735	C	C	110903735	1	2	54	0	1	0	0	0	0	0	0	0	7787	1769	61	5		5	IMMP2L	7	110903735	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	139755	110903735	48234928	2009	58603											
DOCK4	9732	broad.mit.edu	37	chr7	111438884	111438884	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatactaactccaagtatgcTttcctaattttccatgctca	3	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111438884	C	C	111438884	1	2	54	0	1	0	0	0	0	0	0	0	4729	1624	56	5		5	DOCK4	7	111438884	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	535149	111438884	47699779	2010	58604											
DOCK4	9732	broad.mit.edu	37	chr7	111547503	111547503	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatctggcagcccgttggGggaactcctatactcttggg	14	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111547503	A	A	111547503	1	1	54	0	1	0	0	0	0	0	0	0	4729	1247	43	4		4	DOCK4	7	111547503	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	108619	111547503	47591160	2011	58605											
DOCK4	9732	broad.mit.edu	37	chr7	111755434	111755434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctacttcctgaaagaacaCcatttagattcttccagaac	5	11	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111755434	A	A	111755434	1	1	54	0	1	0	0	0	0	0	0	0	4729	522	18	3		3	DOCK4	7	111755434	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	207931	111755434	47383229	2012	58606											
C7orf60	154743	broad.mit.edu	37	chr7	112521397	112521397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccccaccttcaagccagGgacagcttgaagactcaact	8	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112521397	A	A	112521397	1	1	54	0	1	0	0	0	0	0	0	0	2432	1247	43	4		4	C7orf60	7	112521397	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	765963	112521397	46617266	2013	58607											
GPR85	54329	broad.mit.edu	37	chr7	112724206	112724206	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctaggaggatgagagcaaGaagcagcataaatcctaagg	14	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112724206	A	A	112724206	3	1	54	1	0	0	0	0	1	0	0	0	6780	942	33	4	545	4	GPR85	7	112724206	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	202809	112724206	46414457	2014	58608											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518146	113518146	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatttttccacactatactCttctgtttggaaaatctggc	6	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113518146	A	A	113518146	4	1	54	1	0	0	0	0	0	1	0	0	12472	922	32	3	371	3	PPP1R3A	7	113518146	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	793940	113518146	45620517	2015	58609											
FOXP2	93986	broad.mit.edu	37	chr7	114133013	114133013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagctgagttcaattcctGgatatctttgttaactttct	7	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114133013	T	T	114133013	1	4	54	0	1	0	0	0	0	0	0	0	6087	1363	47	2		2	FOXP2	7	114133013	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	614867	114133013	45005650	2016	58610											
TFEC	22797	broad.mit.edu	37	chr7	115610776	115610776	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaggacaattattcacataGgagctagttatttaaaagag	8	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115610776	A	A	115610776	1	1	54	0	1	0	0	0	0	0	0	0	15925	1015	35	4		4	TFEC	7	115610776	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1477763	115610776	43527887	2017	58611											
MET	4233	broad.mit.edu	37	chr7	116372728	116372728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagggagatttcgtaattGtctgatgtagttagtaccct	10	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116372728	T	T	116372728	1	4	54	0	1	0	0	0	0	0	0	0	9578	1392	48	3		3	MET	7	116372728	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	761952	116372728	42765935	2018	58612											
ST7	7982	broad.mit.edu	37	chr7	116797852	116797852	+	Intron	SNP	C	T	T													agagggggaggaatgcttatCgccctctgtctgtgggcctg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116797852	T	T	116797852	1	4	54	0	1	0	0	0	0	0	0	0	15347	899	31	4		4	ST7	7	116797852	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	425124	116797852	42340811	2019	58613	277	2									
ST7	7982	broad.mit.edu	37	chr7	116797862	116797862	+	Intron	SNP	C	T	T													gaatgcttatcgccctctgtCtgtgggcctgcttccaagcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116797862	T	T	116797862	1	4	54	0	1	0	0	0	0	0	0	0	15347	928	32	4		4	ST7	7	116797862	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10	116797862	42340801	2020	58614	277	2									
CTTNBP2	83992	broad.mit.edu	37	chr7	117394267	117394267	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggcgactctcttcatttcAtttgtttttcagtccaaatg	6	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117394267	T	T	117394267	1	4	54	0	1	0	0	0	0	0	0	0	4079	232	8	5		5	CTTNBP2	7	117394267	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	596405	117394267	41744396	2021	58615											
ANKRD7	56311	broad.mit.edu	37	chr7	117880135	117880135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaacaactttcttaaGtaacatttaattttaaaatg	4	4	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117880135	T	T	117880135	1	4	54	0	1	0	0	0	0	0	0	0	686	1044	36	3		3	ANKRD7	7	117880135	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	485868	117880135	41258528	2022	58616											
KCND2	3751	broad.mit.edu	37	chr7	120006391	120006391	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctattgaaaatacaaaaaaTagctggacgtggtggcgcat	10	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120006391	A	A	120006391	1	1	54	0	1	0	0	0	0	0	0	0	8089	1421	49	5		5	KCND2	7	120006391	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2126256	120006391	39132272	2023	58617											
KCND2	3751	broad.mit.edu	37	chr7	120377223	120377223	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggttagaacctgaaattTtgctaataaattcccaggtg	9	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120377223	G	G	120377223	1	3	54	0	1	0	0	0	0	0	0	0	8089	1856	64	5		5	KCND2	7	120377223	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	370832	120377223	38761440	2024	58618											
C7orf58	79974	broad.mit.edu	37	chr7	120678264	120678264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtaggcatctttttcctGttccagttctcagggggaat	10	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120678264	T	T	120678264	1	4	54	0	1	0	0	0	0	0	0	0	2430	1392	48	3		3	C7orf58	7	120678264	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	301041	120678264	38460399	2025	58619											
C7orf58	79974	broad.mit.edu	37	chr7	120692599	120692599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctccaagacacttgctaGctttatgattgcgtgagtca	9	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120692599	T	T	120692599	1	4	54	0	1	0	0	0	0	0	0	0	2430	986	34	3		3	C7orf58	7	120692599	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14335	120692599	38446064	2026	58620											
C7orf58	79974	broad.mit.edu	37	chr7	120921533	120921533	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtatgccttctaaaatgtCtctgtacccacgtttttaat	5	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120921533	A	A	120921533	1	1	54	0	1	0	0	0	0	0	0	0	2430	928	32	3		3	C7orf58	7	120921533	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	228934	120921533	38217130	2027	58621											
PTPRZ1	5803	broad.mit.edu	37	chr7	121548830	121548830	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actaatgacactttattaatAgtgctactcatctttctggg	6	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121548830	T	T	121548830	1	4	54	0	1	0	0	0	0	0	0	0	12922	435	15	5		5	PTPRZ1	7	121548830	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	627297	121548830	37589833	2028	58622											
PTPRZ1	5803	broad.mit.edu	37	chr7	121659297	121659297	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttatctgtctagtggttCttgtgggtattctcatctac	8	8	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121659297	G	G	121659297	3	3	54	1	0	0	0	0	1	0	0	0	12922	913	32	4	5013	4	PTPRZ1	7	121659297	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	110467	121659297	37479366	2029	58623											
PTPRZ1	5803	broad.mit.edu	37	chr7	121679453	121679453	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttactgatttcagggaatgActtttacatggagcatttga	9	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121679453	G	G	121679453	1	3	54	0	1	0	0	0	0	0	0	0	12922	290	10	5		5	PTPRZ1	7	121679453	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	20156	121679453	37459210	2030	58624											
PTPRZ1	5803	broad.mit.edu	37	chr7	121682766	121682766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttcttaaaacacatccGttcacaaagaaattatttgg	6	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121682766	T	T	121682766	3	4	54	1	0	0	0	0	1	0	0	0	12922	1145	40	3	5992	3	PTPRZ1	7	121682766	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3313	121682766	37455897	2031	58625											
PTPRZ1	5803	broad.mit.edu	37	chr7	121691543	121691543	+	Frame_Shift_Del	DEL	G	-	-													agccctaaagcaatgcaacaGggaaaagaatcgaacttctt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121691543	-	-	121691543	7	5	54	1	0	1	0	1	0	0	0	0	12922	1000	35	0	6240	0	PTPRZ1	7	121691543	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	8777	121691543	37447120	2032	58626											
AASS	10157	broad.mit.edu	37	chr7	121763262	121763262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccatttctgcatagctcCtcactgtttggtactatgtg	7	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121763262	A	A	121763262	1	1	54	0	1	0	0	0	0	0	0	0	24	696	24	2		2	AASS	7	121763262	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	71719	121763262	37375401	2033	58627											
FEZF1	389549	broad.mit.edu	37	chr7	121944292	121944292	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggggatcgacgagttgAgatgcagagagtgcttgggt	18	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121944292	T	T	121944292	3	4	54	1	0	0	0	0	1	0	0	0	5882	304	11	5	1243	5	FEZF1	7	121944292	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	181030	121944292	37194371	2034	58628											
SLC13A1	6561	broad.mit.edu	37	chr7	122809236	122809236	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgtggttggttgatccgttGaagtaagtcatctgagtggc	14	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122809236	C	C	122809236	3	2	54	1	0	0	0	0	1	0	0	0	14504	1281	45	4	1316	4	SLC13A1	7	122809236	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	864944	122809236	36329427	2035	58629											
NDUFA5	4698	broad.mit.edu	37	chr7	123197294	123197294	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aataaataaaaatgtgacatCggatcaacgaagtaggtgga	10	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123197294	T	T	123197294	1	4	54	0	1	0	0	0	0	0	0	0	10363	899	31	4		4	NDUFA5	7	123197294	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	388058	123197294	35941369	2036	58630											
GPR37	2861	broad.mit.edu	37	chr7	124386587	124386587	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtactgtccttcagcaatGagttccgacagaagcaaaag	9	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124386587	C	C	124386587	3	2	54	1	0	0	0	0	1	0	0	0	6756	1290	45	4	11	4	GPR37	7	124386587	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1189293	124386587	34752076	2037	58631											
GRM8	2918	broad.mit.edu	37	chr7	126542658	126542658	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaacttgcagccaaaattcTcctcccagaattctgcaaac	4	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126542658	A	A	126542658	3	1	54	1	0	0	0	0	1	0	0	0	6869	1551	54	5	1706	5	GRM8	7	126542658	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2156071	126542658	32596005	2038	58632											
GRM8	2918	broad.mit.edu	37	chr7	126547132	126547132	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagagaaaaagaatggAgacgagaaagaagaagagca	14	2	0	8			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126547132	C	C	126547132	1	2	54	0	1	0	0	0	0	0	0	0	6869	319	11	5		5	GRM8	7	126547132	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4474	126547132	32591531	2039	58633											
GRM8	2918	broad.mit.edu	37	chr7	126645621	126645621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagatctgagtgactctgcCaagcatgattctatttgcaa	9	8	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126645621	A	A	126645621	1	1	54	0	1	0	0	0	0	0	0	0	6869	609	21	2		2	GRM8	7	126645621	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	98489	126645621	32493042	2040	58634											
GRM8	2918	broad.mit.edu	37	chr7	126793323	126793323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttacagctaatccaagtgCtataccaagctagtacaagt	7	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126793323	T	T	126793323	1	4	54	0	1	0	0	0	0	0	0	0	6869	812	28	4		4	GRM8	7	126793323	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	147702	126793323	32345340	2041	58635											
LEP	3952	broad.mit.edu	37	chr7	127894609	127894609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgatccaaatatccaaCgacctggagaacctccggga	9	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127894609	A	A	127894609	3	1	54	1	0	0	0	0	1	0	0	0	8799	535	19	3	303	3	LEP	7	127894609	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1101286	127894609	31244054	2042	58636											
RBM28	55131	broad.mit.edu	37	chr7	127973497	127973497	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaacttcttaagtacataaAgataagcctggcgcagtggc	9	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127973497	T	T	127973497	1	4	54	0	1	0	0	0	0	0	0	0	13236	87	3	5		5	RBM28	7	127973497	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	78888	127973497	31165166	2043	58637											
IMPDH1	3614	broad.mit.edu	37	chr7	128049523	128049523	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgtcgtcgggtgtgtagcGaggtccaatctagggctaag	17	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128049523	A	A	128049523	2	1	54	1	0	0	0	0	0	0	0	1	7796	1045	37	4		4	IMPDH1	7	128049523	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	76026	128049523	31089140	2044	58638											
FAM71F1	84691	broad.mit.edu	37	chr7	128365434	128365434	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttccttccttcctTtttctttcttttttgagaca	2	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128365434	G	G	128365434	1	3	54	0	1	0	0	0	0	0	0	0	5663	1856	64	5		5	FAM71F1	7	128365434	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	315911	128365434	30773229	2045	58639											
CCDC136	64753	broad.mit.edu	37	chr7	128446466	128446466	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtaacagcaaccagagGtgaggggacaacttaggtgc	15	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128446466	A	A	128446466	1	1	54	0	1	0	0	0	0	0	0	0	2796	1276	44	4		4	CCDC136	7	128446466	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	81032	128446466	30692197	2046	58640											
CCDC136	64753	broad.mit.edu	37	chr7	128446872	128446872	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcagagctgcagcaccTcagggatacggtggcctcct	14	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128446872	A	A	128446872	3	1	54	1	0	0	0	0	1	0	0	0	2796	1551	54	5	1413	5	CCDC136	7	128446872	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	406	128446872	30691791	2047	58641											
CCDC136	64753	broad.mit.edu	37	chr7	128455589	128455589	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctggaagtcatgtttcctgGagctagtacagcattgtcat	11	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128455589	T	T	128455589	1	4	54	0	1	0	0	0	0	0	0	0	2796	1189	41	3		3	CCDC136	7	128455589	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8717	128455589	30683074	2048	58642											
FLNC	2318	broad.mit.edu	37	chr7	128495051	128495051	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccaggcaggagatgcttGgggccacagaactcccctcc	13	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128495051	T	T	128495051	1	4	54	0	1	0	0	0	0	0	0	0	5993	1363	47	2		2	FLNC	7	128495051	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	39462	128495051	30643612	2049	58643											
CPA1	1357	broad.mit.edu	37	chr7	130022144	130022144	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggggaaatcatggtaccaGggaacacgctgttaaatgga	13	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130022144	A	A	130022144	1	1	54	0	1	0	0	0	0	0	0	0	3821	1015	35	4		4	CPA1	7	130022144	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1527093	130022144	29116519	2050	58644											
COPG2	26958	broad.mit.edu	37	chr7	130290615	130290615	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgagattggaagtggattCttcctcaaagcctccagtaa	9	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130290615	T	T	130290615	1	4	54	0	1	0	0	0	0	0	0	0	3764	928	32	4		4	COPG2	7	130290615	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	268471	130290615	28848048	2051	58645											
PLXNA4	91584	broad.mit.edu	37	chr7	132053146	132053146	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacgcggctgcacccacacaGatcctggctccctgtcgctc	10	18	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132053146	T	T	132053146	1	4	54	0	1	0	0	0	0	0	0	0	12217	957	33	3		3	PLXNA4	7	132053146	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1762531	132053146	27085517	2052	58646											
PLXNA4	91584	broad.mit.edu	37	chr7	132075908	132075908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagccaggaggacggaagGgtaccagcagctggcaggag	17	11	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132075908	T	T	132075908	1	4	54	0	1	0	0	0	0	0	0	0	12217	1247	43	2		2	PLXNA4	7	132075908	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22762	132075908	27062755	2053	58647											
CHCHD3	54927	broad.mit.edu	37	chr7	132554375	132554375	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttgctttagagtcaggatCtcgctctgttgcccaggctg	11	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132554375	T	T	132554375	1	4	54	0	1	0	0	0	0	0	0	0	3348	928	32	4		4	CHCHD3	7	132554375	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	478467	132554375	26584288	2054	58648											
EXOC4	60412	broad.mit.edu	37	chr7	133507510	133507510	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcacaccagccctctaAgtgattttggtactcgctaa	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133507510	T	T	133507510	1	4	54	0	1	0	0	0	0	0	0	0	5348	87	3	5		5	EXOC4	7	133507510	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	953135	133507510	25631153	2055	58649											
EXOC4	60412	broad.mit.edu	37	chr7	133722170	133722170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgatgggtgaaatatgttAtatgattataattcaataat	8	1	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133722170	G	G	133722170	1	3	54	0	1	0	0	0	0	0	0	0	5348	464	16	5		5	EXOC4	7	133722170	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	214660	133722170	25416493	2056	58650											
AKR1B1	231	broad.mit.edu	37	chr7	134132818	134132818	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcgggcttggccctgaGgatagaaagacagtccaggt	14	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134132818	A	A	134132818	1	1	54	0	1	0	0	0	0	0	0	0	466	1015	35	4		4	AKR1B1	7	134132818	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	410648	134132818	25005845	2057	58651											
AKR1B1	231	broad.mit.edu	37	chr7	134136430	134136430	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcattctcattctggtacaCatgggcacagtcgatgtggc	10	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134136430	T	T	134136430	3	4	54	1	0	0	0	0	1	0	0	0	466	478	17	4	844	4	AKR1B1	7	134136430	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3612	134136430	25002233	2058	58652											
AKR1B10	57016	broad.mit.edu	37	chr7	134212696	134212696	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagctcagtaccaaagcCaagatgcccattgtgggcct	12	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134212696	A	A	134212696	2	1	54	1	0	0	0	0	0	0	0	1	467	581	21	2		2	AKR1B10	7	134212696	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	76266	134212696	24925967	2059	58653											
AKR1B10	57016	broad.mit.edu	37	chr7	134223009	134223009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtctgtgacaccagcaCgcattgttgagaacattcag	9	11	2	2	rs142388608		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134223009	A	A	134223009	3	1	54	1	0	0	0	0	1	0	0	0	467	536	19	3	835	3	AKR1B10	7	134223009	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10313	134223009	24915654	2060	58654											
AKR1B10	57016	broad.mit.edu	37	chr7	134225909	134225909	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagtgtgactacctccactCatgtcccattttagccaagc	7	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134225909	A	A	134225909	1	1	54	0	1	0	0	0	0	0	0	0	467	841	29	3		3	AKR1B10	7	134225909	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2900	134225909	24912754	2061	58655											
AKR1B15	441282	broad.mit.edu	37	chr7	134231709	134231709	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacaaagtatttcccaggtGgttgggataagctggaggct	14	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134231709	C	C	134231709	1	2	54	0	1	0	0	0	0	0	0	0	468	1363	47	4		4	AKR1B15	7	134231709	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5800	134231709	24906954	2062	58656											
AKR1B15	441282	broad.mit.edu	37	chr7	134261936	134261936	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctatcattttccagcccaGggagctaggctcggtagagc	11	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134261936	A	A	134261936	1	1	54	0	1	0	0	0	0	0	0	0	468	1015	35	4		4	AKR1B15	7	134261936	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	30227	134261936	24876727	2063	58657											
SLC13A4	26266	broad.mit.edu	37	chr7	135384184	135384184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaggccgccaatggtagcgGagtaggatatgctcagggag	16	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135384184	T	T	135384184	3	4	54	1	0	0	0	0	1	0	0	0	14507	1174	41	3	1092	3	SLC13A4	7	135384184	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1122248	135384184	23754479	2064	58658											
FAM180A	389558	broad.mit.edu	37	chr7	135419037	135419037	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgatggagatctgcaggtCagggctgatctcaagttcgg	14	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135419037	T	T	135419037	3	4	54	1	0	0	0	0	1	0	0	0	5552	826	29	4	317	4	FAM180A	7	135419037	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	34853	135419037	23719626	2065	58659											
CHRM2	1129	broad.mit.edu	37	chr7	136578041	136578041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttggggaggggaacagCaagatttatctgagagggca	16	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136578041	A	A	136578041	1	1	54	0	1	0	0	0	0	0	0	0	3408	725	25	3		3	CHRM2	7	136578041	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1159004	136578041	22560622	2066	58660											
CHRM2	1129	broad.mit.edu	37	chr7	136597476	136597476	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagcctaagacatcctataGatattaattacaaaaagata	6	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136597476	C	C	136597476	1	2	54	0	1	0	0	0	0	0	0	0	3408	957	33	4		4	CHRM2	7	136597476	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19435	136597476	22541187	2067	58661											
CHRM2	1129	broad.mit.edu	37	chr7	136623301	136623301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgactgcagtgatccctccCatgccgctggccccaccata	9	17	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136623301	A	A	136623301	1	1	54	0	1	0	0	0	0	0	0	0	3408	609	21	2		2	CHRM2	7	136623301	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25825	136623301	22515362	2068	58662											
CHRM2	1129	broad.mit.edu	37	chr7	136651666	136651666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgacactatatttacaaGgcaggaaaagaatgctttaa	8	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136651666	T	T	136651666	1	4	54	0	1	0	0	0	0	0	0	0	3408	1015	35	2		2	CHRM2	7	136651666	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28365	136651666	22486997	2069	58663											
CHRM2	1129	broad.mit.edu	37	chr7	136670669	136670669	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaccagtggatgaggcAaacaaaatcttctaatagct	7	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136670669	T	T	136670669	1	4	54	0	1	0	0	0	0	0	0	0	3408	145	5	5		5	CHRM2	7	136670669	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	19003	136670669	22467994	2070	58664											
CHRM2	1129	broad.mit.edu	37	chr7	136700289	136700289	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacaagaaggagcctgttgCcaaccaagaccccgtttctc	10	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136700289	G	G	136700289	3	3	54	1	0	0	0	0	1	0	0	0	3408	739	26	4	679	4	CHRM2	7	136700289	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	29620	136700289	22438374	2071	58665											
DGKI	9162	broad.mit.edu	37	chr7	137097011	137097011	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccctcttattaaaatattAcacaaagttggatccatatt	4	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137097011	G	G	137097011	1	3	54	0	1	0	0	0	0	0	0	0	4511	406	14	5		5	DGKI	7	137097011	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	396722	137097011	22041652	2072	58666											
DGKI	9162	broad.mit.edu	37	chr7	137237296	137237296	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagcctctctccatggcCcccaacttgcagggctgcct	10	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137237296	T	T	137237296	3	4	54	1	0	0	0	0	1	0	0	0	4511	623	22	4	1291	4	DGKI	7	137237296	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	140285	137237296	21901367	2073	58667											
DGKI	9162	broad.mit.edu	37	chr7	137271689	137271689	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaactgaagaagctaccaGatcaaataagggctcaaggg	10	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137271689	T	T	137271689	1	4	54	0	1	0	0	0	0	0	0	0	4511	957	33	3		3	DGKI	7	137271689	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	34393	137271689	21866974	2074	58668											
DGKI	9162	broad.mit.edu	37	chr7	137442440	137442440	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagccagaacctggcaaAcagctcaatattggttcagg	9	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137442440	C	C	137442440	1	2	54	0	1	0	0	0	0	0	0	0	4511	58	2	5		5	DGKI	7	137442440	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	170751	137442440	21696223	2075	58669											
DGKI	9162	broad.mit.edu	37	chr7	137445501	137445501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgaggtccactaatacCacttcacccaacaagccacc	5	17	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137445501	A	A	137445501	1	1	54	0	1	0	0	0	0	0	0	0	4511	609	21	2		2	DGKI	7	137445501	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3061	137445501	21693162	2076	58670											
DGKI	9162	broad.mit.edu	37	chr7	137472507	137472507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttggtgtatatacagacGgaatactactcagccatgaa	8	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137472507	T	T	137472507	1	4	54	0	1	0	0	0	0	0	0	0	4511	1131	39	1		1	DGKI	7	137472507	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27006	137472507	21666156	2077	58671											
CREB3L2	64764	broad.mit.edu	37	chr7	137567078	137567078	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaggcctatggagagtctCaacctcacatctcaggttgc	9	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137567078	G	G	137567078	1	3	54	0	1	0	0	0	0	0	0	0	3889	841	29	4		4	CREB3L2	7	137567078	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	94571	137567078	21571585	2078	58672											
AKR1D1	6718	broad.mit.edu	37	chr7	137736397	137736397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttcaggaatgaagccaCagaccctcatggtgagtgtt	11	9	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137736397	A	A	137736397	1	1	54	0	1	0	0	0	0	0	0	0	473	493	17	3		3	AKR1D1	7	137736397	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	169319	137736397	21402266	2079	58673											
KIAA1549	57670	broad.mit.edu	37	chr7	138620437	138620437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcaatgaacatccacacCgacgtccaagctgccaggag	10	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138620437	A	A	138620437	1	1	54	0	1	0	0	0	0	0	0	0	8314	667	23	1		1	KIAA1549	7	138620437	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	884040	138620437	20518226	2080	58674											
HIPK2	28996	broad.mit.edu	37	chr7	139281713	139281713	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtggggagctgatggcctGagaggaggacacctcacagg	17	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139281713	C	C	139281713	3	2	54	1	0	0	0	0	1	0	0	0	7184	1299	45	4	1145	4	HIPK2	7	139281713	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	661276	139281713	19856950	2081	58675											
TBXAS1	6916	broad.mit.edu	37	chr7	139571873	139571873	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggactcctattctactcacTcaactctaggcctccaattt	4	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139571873	C	C	139571873	1	2	54	0	1	0	0	0	0	0	0	0	15786	1566	54	5		5	TBXAS1	7	139571873	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	290160	139571873	19566790	2082	58676											
TBXAS1	6916	broad.mit.edu	37	chr7	139657308	139657308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaagcagcagtgcggcgGggagggcaggactccaaaac	16	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139657308	T	T	139657308	1	4	54	0	1	0	0	0	0	0	0	0	15786	1247	43	2		2	TBXAS1	7	139657308	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	85435	139657308	19481355	2083	58677											
PARP12	64761	broad.mit.edu	37	chr7	139726279	139726279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagacgcaggtcacaggCtaccctgactaggcctgtaa	11	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139726279	A	A	139726279	1	1	54	0	1	0	0	0	0	0	0	0	11551	812	28	3		3	PARP12	7	139726279	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68971	139726279	19412384	2084	58678											
RAB19	401409	broad.mit.edu	37	chr7	140110929	140110929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctctcggccgggcgcaGtggctcacgcctgtaatctc	11	17	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140110929	T	T	140110929	1	4	54	0	1	0	0	0	0	0	0	0	13012	1044	36	3		3	RAB19	7	140110929	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	384650	140110929	19027734	2085	58679											
DENND2A	27147	broad.mit.edu	37	chr7	140301825	140301825	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctggcttaggtcttgccCcggctctgggtcctgtcccc	13	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140301825	G	G	140301825	3	3	54	1	0	0	0	0	1	0	0	0	4469	623	22	4	2728	4	DENND2A	7	140301825	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	190896	140301825	18836838	2086	58680											
BRAF	673	broad.mit.edu	37	chr7	140508807	140508807	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggtacctatggtatcaTaaatatattgataagaggta	9	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140508807	G	G	140508807	1	3	54	0	1	0	0	0	0	0	0	0	1505	1421	49	5		5	BRAF	7	140508807	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	206982	140508807	18629856	2087	58681											
WEE2	494551	broad.mit.edu	37	chr7	141416260	141416260	+	Intron	DEL	C	-	-													tcttctaccctctccttctgCccttctccttctgccctctc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141416260	-	-	141416260	6	5	54	0	1	1	0	1	0	0	0	0	17472	754	26	0		0	WEE2	7	141416260	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	907453	141416260	17722403	2088	58682											
MGAM	8972	broad.mit.edu	37	chr7	141722155	141722155	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactaacgtgtatggcctGggagagcatgtgcaccagca	13	10	0	1	rs146615509	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141722155	T	T	141722155	2	4	54	1	0	0	0	0	0	0	0	1	9634	1335	47	2		2	MGAM	7	141722155	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	305895	141722155	17416508	2089	58683											
MGAM	8972	broad.mit.edu	37	chr7	141725064	141725064	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgagccatagtgtagggAgggccttatagattctctaa	12	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141725064	G	G	141725064	1	3	54	0	1	0	0	0	0	0	0	0	9634	319	11	5		5	MGAM	7	141725064	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2909	141725064	17413599	2090	58684											
MGAM	8972	broad.mit.edu	37	chr7	141775886	141775886	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatattattcatccataagGtaaaggaaatactgccattt	6	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141775886	C	C	141775886	1	2	54	0	1	0	0	0	0	0	0	0	9634	1276	44	4		4	MGAM	7	141775886	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	50822	141775886	17362777	2091	58685											
MGAM	8972	broad.mit.edu	37	chr7	141782958	141782958	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttccactgaacttcttcaGttctatgtgattatgataga	6	8	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141782958	C	C	141782958	1	2	54	0	1	0	0	0	0	0	0	0	9634	1044	36	4		4	MGAM	7	141782958	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7072	141782958	17355705	2092	58686											
EPHB6	2051	broad.mit.edu	37	chr7	142562343	142562343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcagctgtgggcacctGtgtggctcatgcagagccag	17	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142562343	T	T	142562343	3	4	54	1	0	0	0	0	1	0	0	0	5220	1377	48	3	795	3	EPHB6	7	142562343	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	779385	142562343	16576320	2093	58687											
EPHB6	2051	broad.mit.edu	37	chr7	142565367	142565367	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggctggtcccccaggggaGctgtcttcccagcttccgga	13	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142565367	A	A	142565367	2	1	54	1	0	0	0	0	0	0	0	1	5220	962	34	4		4	EPHB6	7	142565367	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3024	142565367	16573296	2094	58688											
TRPV5	56302	broad.mit.edu	37	chr7	142616536	142616536	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggagaaaaaggagagAggagacagcaggtgcaagtt	17	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142616536	T	T	142616536	1	4	54	0	1	0	0	0	0	0	0	0	16724	319	11	5		5	TRPV5	7	142616536	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	51169	142616536	16522127	2095	58689											
KEL	3792	broad.mit.edu	37	chr7	142639318	142639318	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttgagttgtgggggtgctGaattaggtagaagaacctgt	15	3	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142639318	A	A	142639318	1	1	54	0	1	0	0	0	0	0	0	0	8212	1305	45	4		4	KEL	7	142639318	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22782	142639318	16499345	2096	58690											
KEL	3792	broad.mit.edu	37	chr7	142658566	142658566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcctgctcccttccacgGgcagcctctcttctggagtg	11	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142658566	T	T	142658566	3	4	54	1	0	0	0	0	1	0	0	0	8212	1232	43	2	2162	2	KEL	7	142658566	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19248	142658566	16480097	2097	58691											
OR6V1	346517	broad.mit.edu	37	chr7	142750145	142750145	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcagctgccagaaggctttCtccacttgcgggtctcacct	10	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142750145	T	T	142750145	2	4	54	1	0	0	0	0	0	0	0	1	11305	912	32	4		4	OR6V1	7	142750145	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	91579	142750145	16388518	2098	58692											
PIP	5304	broad.mit.edu	37	chr7	142836421	142836421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagggagggaagagcatGgggagagcagatggggaaag	23	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142836421	T	T	142836421	1	4	54	0	1	0	0	0	0	0	0	0	12030	1363	47	2		2	PIP	7	142836421	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	86276	142836421	16302242	2099	58693											
CASP2	835	broad.mit.edu	37	chr7	142989007	142989007	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagcctcccaagtagctggGactacaggcaggtgccacca	11	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142989007	T	T	142989007	1	4	54	0	1	0	0	0	0	0	0	0	2697	1189	41	3		3	CASP2	7	142989007	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	152586	142989007	16149656	2100	58694											
CLCN1	1180	broad.mit.edu	37	chr7	143016240	143016240	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggggtctaattatctaGctgtgggaagaagtagatgg	16	3	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143016240	A	A	143016240	1	1	54	0	1	0	0	0	0	0	0	0	3493	986	34	4		4	CLCN1	7	143016240	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27233	143016240	16122423	2101	58695											
CLCN1	1180	broad.mit.edu	37	chr7	143043412	143043412	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggtcactaggacctgacCttgacctgcatgcaattcct	8	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143043412	G	G	143043412	1	3	54	0	1	0	0	0	0	0	0	0	3493	696	24	4		4	CLCN1	7	143043412	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	27172	143043412	16095251	2102	58696											
OR2A14	135941	broad.mit.edu	37	chr7	143826372	143826372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggactgtaagcttcacaCacccatgtacttcttcctct	5	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143826372	A	A	143826372	3	1	54	1	0	0	0	0	1	0	0	0	11070	478	17	3	169	3	OR2A14	7	143826372	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	782960	143826372	15312291	2103	58697											
ARHGEF5	7984	broad.mit.edu	37	chr7	144076006	144076006	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggcactgcaggcaggGcagtgctgggagtgtgttca	18	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144076006	T	T	144076006	1	4	54	0	1	0	0	0	0	0	0	0	911	1218	42	3		3	ARHGEF5	7	144076006	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	249634	144076006	15062657	2104	58698											
TPK1	27010	broad.mit.edu	37	chr7	144320469	144320469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagacatatcctattatgccTttactattcctgtatcatta	3	9	1	1	rs75366098		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144320469	A	A	144320469	1	1	54	0	1	0	0	0	0	0	0	0	16528	1624	56	5		5	TPK1	7	144320469	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	244463	144320469	14818194	2105	58699											
CNTNAP2	26047	broad.mit.edu	37	chr7	145949725	145949725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcttggagagctgactctTagaccagaatagaaaacatt	9	7	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145949725	C	C	145949725	1	2	54	0	1	0	0	0	0	0	0	0	3679	1769	61	5		5	CNTNAP2	7	145949725	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1629256	145949725	13188938	2106	58700											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471405	146471405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggactcccccatgtggCtttcagcagctcctcctcca	7	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146471405	A	A	146471405	3	1	54	1	0	0	0	0	1	0	0	0	3679	797	28	3	146	3	CNTNAP2	7	146471405	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	521680	146471405	12667258	2107	58701											
CNTNAP2	26047	broad.mit.edu	37	chr7	147376605	147376605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttttctaaaaatatggCcacgttgtaaatgtgtgttt	8	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147376605	A	A	147376605	1	1	54	0	1	0	0	0	0	0	0	0	3679	754	26	3		3	CNTNAP2	7	147376605	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	905200	147376605	11762058	2108	58702											
CNTNAP2	26047	broad.mit.edu	37	chr7	147434472	147434472	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcctgatcgttcctctGgaagtttcatctcagagggg	12	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147434472	A	A	147434472	1	1	54	0	1	0	0	0	0	0	0	0	3679	1363	47	4		4	CNTNAP2	7	147434472	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	57867	147434472	11704191	2109	58703											
CNTNAP2	26047	broad.mit.edu	37	chr7	147501690	147501690	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtctcactttgtcacccaGactggagtacagtggtgcga	13	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147501690	T	T	147501690	1	4	54	0	1	0	0	0	0	0	0	0	3679	957	33	3		3	CNTNAP2	7	147501690	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	67218	147501690	11636973	2110	58704											
GIMAP7	168537	broad.mit.edu	37	chr7	150210324	150210324	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggtcactaggccatcaCcagaaatgaggatatggctg	13	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150210324	A	A	150210324	1	1	54	0	1	0	0	0	0	0	0	0	6448	522	18	3		3	GIMAP7	7	150210324	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2708634	150210324	8928339	2111	58705											
GIMAP4	55303	broad.mit.edu	37	chr7	150269516	150269516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcatgctctgcttctgGtggttccactgggccgttac	12	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150269516	T	T	150269516	3	4	54	1	0	0	0	0	1	0	0	0	6445	1261	44	3	364	3	GIMAP4	7	150269516	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	59192	150269516	8869147	2112	58706											
GIMAP1	170575	broad.mit.edu	37	chr7	150402905	150402905	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaggcaatatcattcaggaCataggcatgggcaaagactt	10	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150402905	T	T	150402905	1	4	54	0	1	0	0	0	0	0	0	0	6443	493	17	4		4	GIMAP1	7	150402905	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	133389	150402905	8735758	2113	58707											
TMEM176B	28959	broad.mit.edu	37	chr7	150489951	150489951	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaagggtgacccactatctCctctctgaaatgtctcctct	7	13	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150489951	G	G	150489951	1	3	54	0	1	0	0	0	0	0	0	0	16216	870	30	4		4	TMEM176B	7	150489951	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87046	150489951	8648712	2114	58708											
KCNH2	3757	broad.mit.edu	37	chr7	150646204	150646204	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaggcagcaggcaccttcTcccggcatccccaccccggg	10	20	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150646204	C	C	150646204	1	2	54	0	1	0	0	0	0	0	0	0	8102	1566	54	5		5	KCNH2	7	150646204	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	156253	150646204	8492459	2115	58709											
NOS3	4846	broad.mit.edu	37	chr7	150698505	150698505	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttcctgtccccggccttcCgctaccaggtgcccacccta	7	19	0	0	rs145805216		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150698505	G	G	150698505	3	3	54	1	0	0	0	0	1	0	0	0	10639	652	23	4	1458	4	NOS3	7	150698505	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	52301	150698505	8440158	2116	58710											
NUB1	51667	broad.mit.edu	37	chr7	151046189	151046189	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcagtactctgacagactaGaatgctgtgaaaatgaagta	10	6	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151046189	C	C	151046189	3	2	54	1	0	0	0	0	1	0	0	0	10809	943	33	4	154	4	NUB1	7	151046189	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	347684	151046189	8092474	2117	58711											
GALNTL5	168391	broad.mit.edu	37	chr7	151664474	151664474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgtcagcttggtcccCtggaaaaaaagtgcatcagc	10	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151664474	A	A	151664474	3	1	54	1	0	0	0	0	1	0	0	0	6286	681	24	2	145	2	GALNTL5	7	151664474	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	618285	151664474	7474189	2118	58712											
MLL3	58508	broad.mit.edu	37	chr7	151933018	151933018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaatccagacccacggcCctatgtaacagattgggaaa	10	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151933018	A	A	151933018	3	1	54	1	0	0	0	0	1	0	0	0	9715	637	22	2	12258	2	MLL3	7	151933018	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	268544	151933018	7205645	2119	58713											
DPP6	1804	broad.mit.edu	37	chr7	153584824	153584824	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggaacgtgatggtgaGtgccacggacagggcgcgcg	20	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153584824	C	C	153584824	1	2	54	0	1	0	0	0	0	0	0	0	4770	1044	36	4		4	DPP6	7	153584824	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1651806	153584824	5553839	2120	58714											
DPP6	1804	broad.mit.edu	37	chr7	153627115	153627116	+	Intron	DNP	CC	AA	AA													attcatcagtgagtctgactCcagagcttcaattttctgaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	153627116	AA	AA	153627115	1	1	54	0	1	0	0	0	0	0	0	0	4770	870	30	3		3	DPP6	7	153627115	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	42291	153627115	5511548	2121	58715											
DPP6	1804	broad.mit.edu	37	chr7	153789297	153789297	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caattgtttacattttgctcCacttactttattattttctc	2	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153789297	T	T	153789297	1	4	54	0	1	0	0	0	0	0	0	0	4770	609	21	4		4	DPP6	7	153789297	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	162182	153789297	5349366	2122	58716											
DPP6	1804	broad.mit.edu	37	chr7	154172127	154172127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaagtggataagtggtgaGtccaggtccttcgtgcacaa	13	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154172127	T	T	154172127	1	4	54	0	1	0	0	0	0	0	0	0	4770	1044	36	3		3	DPP6	7	154172127	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	382830	154172127	4966536	2123	58717											
DPP6	1804	broad.mit.edu	37	chr7	154172176	154172176	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccccatgcctcacccccaCtttcaataggttgggtctag	7	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154172176	A	A	154172176	1	1	54	0	1	0	0	0	0	0	0	0	4770	580	20	3		3	DPP6	7	154172176	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	49	154172176	4966487	2124	58718											
DPP6	1804	broad.mit.edu	37	chr7	154237654	154237654	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagaacagaaaggaacagtGagactgtggaatgttgaaac	13	4	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154237654	A	A	154237654	2	1	54	1	0	0	0	0	0	0	0	1	4770	1277	45	4		4	DPP6	7	154237654	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	65478	154237654	4901009	2125	58719											
DPP6	1804	broad.mit.edu	37	chr7	154242464	154242464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcctggttcctaaagtcCtcatgaatttttatcttctg	7	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154242464	A	A	154242464	1	1	54	0	1	0	0	0	0	0	0	0	4770	696	24	2		2	DPP6	7	154242464	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4810	154242464	4896199	2126	58720											
DPP6	1804	broad.mit.edu	37	chr7	154266681	154266681	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttgtttatatgaaccaacTcaacttttcattaaaaagac	3	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154266681	A	A	154266681	1	1	54	0	1	0	0	0	0	0	0	0	4770	1566	54	5		5	DPP6	7	154266681	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	24217	154266681	4871982	2127	58721											
DPP6	1804	broad.mit.edu	37	chr7	154371898	154371898	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacacatgcacacatactCtccctcccccttacacacac	1	21	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154371898	T	T	154371898	1	4	54	0	1	0	0	0	0	0	0	0	4770	928	32	4		4	DPP6	7	154371898	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	105217	154371898	4766765	2128	58722											
DPP6	1804	broad.mit.edu	37	chr7	154375380	154375380	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctgatcagtcagaagcctCgcgtggaggagatctgcata	12	11	3	3	rs79449074	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154375380	A	A	154375380	1	1	54	0	1	0	0	0	0	0	0	0	4770	899	31	3		3	DPP6	7	154375380	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3482	154375380	4763283	2129	58723											
DPP6	1804	broad.mit.edu	37	chr7	154619002	154619002	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attctcatcctctttcttatCtgtttcttttccctcttcct	1	14	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154619002	G	G	154619002	1	3	54	0	1	0	0	0	0	0	0	0	4770	928	32	4		4	DPP6	7	154619002	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	243622	154619002	4519661	2130	58724											
SHH	6469	broad.mit.edu	37	chr7	155604608	155604608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagttccttaaatcgctcgGagtttctggagatcttccct	9	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155604608	T	T	155604608	3	4	54	1	0	0	0	0	1	0	0	0	14392	1174	41	3	1191	3	SHH	7	155604608	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	985606	155604608	3534055	2131	58725											
UBE3C	9690	broad.mit.edu	37	chr7	156974947	156974947	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcactgttgttaatagagAgtagatgttcaagaaagagt	11	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156974947	G	G	156974947	3	3	54	1	0	0	0	0	1	0	0	0	17007	304	11	5	946	5	UBE3C	7	156974947	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1370339	156974947	2163716	2132	58726											
PTPRN2	5799	broad.mit.edu	37	chr7	157907563	157907563	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaacagcaagcaaatgccctCgggtagcacagtcactcaga	9	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157907563	T	T	157907563	1	4	54	0	1	0	0	0	0	0	0	0	12916	899	31	4		4	PTPRN2	7	157907563	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	932616	157907563	1231100	2133	58727											
PTPRN2	5799	broad.mit.edu	37	chr7	158038115	158038115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggggctgcaccaggaatGcgcggcctgttgagtttcag	16	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158038115	T	T	158038115	1	4	54	0	1	0	0	0	0	0	0	0	12916	1334	46	3		3	PTPRN2	7	158038115	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	130552	158038115	1100548	2134	58728											
CSMD1	64478	broad.mit.edu	37	chr8	2831874	2831874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaataaatgcataattataGggcttttcaaataactgtaa	5	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2831874	T	T	2831874	1	4	54	0	1	0	0	0	0	0	0	0	3978	1015	35	2		2	CSMD1	8	2831874	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		2831874	143532148	2135	58729											
CSMD1	64478	broad.mit.edu	37	chr8	2966135	2966135	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcaactgaccgtggaaattGaggacaaagaagcctccatt	9	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2966135	A	A	2966135	2	1	54	1	0	0	0	0	0	0	0	1	3978	1277	45	4		4	CSMD1	8	2966135	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	134261	2966135	143397887	2136	58730											
CSMD1	64478	broad.mit.edu	37	chr8	3047314	3047314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacttcccatgaaacaaaCtgccctttaaatgggtcatg	6	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3047314	A	A	3047314	1	1	54	0	1	0	0	0	0	0	0	0	3978	580	20	3		3	CSMD1	8	3047314	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	81179	3047314	143316708	2137	58731											
CSMD1	64478	broad.mit.edu	37	chr8	3177603	3177603	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagcatagaggggctgccaCcagcgcacacagaagacatg	12	13	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3177603	G	G	3177603	1	3	54	0	1	0	0	0	0	0	0	0	3978	522	18	4		4	CSMD1	8	3177603	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	130289	3177603	143186419	2138	58732											
CSMD1	64478	broad.mit.edu	37	chr8	3293135	3293135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacctccaacctagcgacCttgatgactatgagctgtta	7	13	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3293135	A	A	3293135	1	1	54	0	1	0	0	0	0	0	0	0	3978	696	24	2		2	CSMD1	8	3293135	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	115532	3293135	143070887	2139	58733											
CSMD1	64478	broad.mit.edu	37	chr8	3377996	3377996	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcaagttactattgctagActgtagtcaacaaaataaaa	5	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3377996	G	G	3377996	1	3	54	0	1	0	0	0	0	0	0	0	3978	290	10	5		5	CSMD1	8	3377996	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	84861	3377996	142986026	2140	58734											
CSMD1	64478	broad.mit.edu	37	chr8	3855503	3855503	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtcagtgaagaccagcGcaatggtgtccccgggctca	13	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3855503	A	A	3855503	3	1	54	1	0	0	0	0	1	0	0	0	3978	1087	38	4	10031	4	CSMD1	8	3855503	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	477507	3855503	142508519	2141	58735											
CSMD1	64478	broad.mit.edu	37	chr8	4368325	4368325	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcttccttcccctttcccttCccttccttcactccctccct	0	23	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4368325	T	T	4368325	1	4	54	0	1	0	0	0	0	0	0	0	3978	870	30	4		4	CSMD1	8	4368325	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	512822	4368325	141995697	2142	58736											
CSMD1	64478	broad.mit.edu	37	chr8	4645234	4645234	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgtttttcaaggatgctgCcaataatgacccacagtggt	10	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4645234	G	G	4645234	1	3	54	0	1	0	0	0	0	0	0	0	3978	754	26	4		4	CSMD1	8	4645234	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	276909	4645234	141718788	2143	58737											
CSMD1	64478	broad.mit.edu	37	chr8	4715562	4715562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactggcaaaacgaatgcaGcagcacatcaaaaagcttat	7	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4715562	T	T	4715562	1	4	54	0	1	0	0	0	0	0	0	0	3978	986	34	3		3	CSMD1	8	4715562	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	70328	4715562	141648460	2144	58738											
TNKS	8658	broad.mit.edu	37	chr8	9413471	9413471	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcggcgtcgcgtcgctctCagcatcatcaccaccatcat	9	16	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9413471	T	T	9413471	4	4	54	1	0	0	0	0	0	1	0	0	16442	827	29	4	24	4	TNKS	8	9413471	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4697909	9413471	136950551	2145	58739											
MSRA	4482	broad.mit.edu	37	chr8	9948345	9948345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagcatacttttttcaaaGgcccatccatgccattgcat	5	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9948345	T	T	9948345	1	4	54	0	1	0	0	0	0	0	0	0	9981	1015	35	2		2	MSRA	8	9948345	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	534874	9948345	136415677	2146	58740											
MSRA	4482	broad.mit.edu	37	chr8	9958038	9958038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaccatggagtctagggGgctaggggatgtgatcagaa	16	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9958038	T	T	9958038	1	4	54	0	1	0	0	0	0	0	0	0	9981	1247	43	2		2	MSRA	8	9958038	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9693	9958038	136405984	2147	58741											
RP1L1	94137	broad.mit.edu	37	chr8	10465673	10465673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacttcaacctccagggCctctacatcttctgactctg	5	17	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10465673	A	A	10465673	3	1	54	1	0	0	0	0	1	0	0	0	13644	739	26	3	1271	3	RP1L1	8	10465673	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	507635	10465673	135898349	2148	58742											
RP1L1	94137	broad.mit.edu	37	chr8	10467204	10467204	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctcaagctgggagccactCtgcctctcgctggcacttgg	13	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10467204	A	A	10467204	3	1	54	1	0	0	0	0	1	0	0	0	13644	912	32	3	2802	3	RP1L1	8	10467204	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1531	10467204	135896818	2149	58743											
C8orf74	203076	broad.mit.edu	37	chr8	10555214	10555214	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctgtgactacttccaccAcaccttcatccgccactaca	3	19	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10555214	G	G	10555214	3	3	54	1	0	0	0	0	1	0	0	0	2462	159	6	5	357	5	C8orf74	8	10555214	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	88010	10555214	135808808	2150	58744											
XKR6	286046	broad.mit.edu	37	chr8	11005324	11005324	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccaagtgctggcaagtatTacaggctgaactgacccctc	9	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11005324	A	A	11005324	1	1	54	0	1	0	0	0	0	0	0	0	17562	1769	61	5		5	XKR6	8	11005324	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	450110	11005324	135358698	2151	58745											
XKR6	286046	broad.mit.edu	37	chr8	11007920	11007920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttatgctttatgcataagCcatttgtagaaaacaaggtg	8	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11007920	A	A	11007920	1	1	54	0	1	0	0	0	0	0	0	0	17562	754	26	3		3	XKR6	8	11007920	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2596	11007920	135356102	2152	58746											
FAM167A	83648	broad.mit.edu	37	chr8	11301401	11301401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaactcacgggaagattaCagatgtgcacttgggggtta	12	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11301401	A	A	11301401	1	1	54	0	1	0	0	0	0	0	0	0	5528	493	17	3		3	FAM167A	8	11301401	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	293481	11301401	135062621	2153	58747											
DEFB134	613211	broad.mit.edu	37	chr8	11851647	11851647	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatacctggaaggaaaatgaAtagaaagataattcactaca	7	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11851647	G	G	11851647	1	3	54	0	1	0	0	0	0	0	0	0	4458	116	4	5		5	DEFB134	8	11851647	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	550246	11851647	134512375	2154	58748											
SGCZ	137868	broad.mit.edu	37	chr8	14157929	14157929	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttaggtaggtaaagagaGgtaaataaagcttgggttct	12	2	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14157929	A	A	14157929	1	1	54	0	1	0	0	0	0	0	0	0	14317	1015	35	4		4	SGCZ	8	14157929	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2306282	14157929	132206093	2155	58749											
SGCZ	137868	broad.mit.edu	37	chr8	14167209	14167209	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccttctgagtattctcacAggagactgagttaagcaatc	8	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14167209	T	T	14167209	1	4	54	0	1	0	0	0	0	0	0	0	14317	203	7	5		5	SGCZ	8	14167209	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	9280	14167209	132196813	2156	58750											
TUSC3	7991	broad.mit.edu	37	chr8	15601106	15601106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacttcgaaaggcgatGttggaaaaagacggagtaag	13	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15601106	T	T	15601106	3	4	54	1	0	0	0	0	1	0	0	0	16904	1377	48	3	952	3	TUSC3	8	15601106	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1433897	15601106	130762916	2157	58751											
SLC7A2	6542	broad.mit.edu	37	chr8	17419520	17419520	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcaccaggctggaggcCtggagcctcgctctcctcgc	12	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17419520	A	A	17419520	2	1	54	1	0	0	0	0	0	0	0	1	14811	668	24	2		2	SLC7A2	8	17419520	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1818414	17419520	128944502	2158	58752											
PSD3	23362	broad.mit.edu	37	chr8	18551468	18551468	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattagcatggcatctgataGgtaagtagtgatgatgggta	13	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18551468	A	A	18551468	1	1	54	0	1	0	0	0	0	0	0	0	12754	1015	35	4		4	PSD3	8	18551468	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1131948	18551468	127812554	2159	58753											
SH2D4A	63898	broad.mit.edu	37	chr8	19221630	19221630	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagacgctccttggctaaaCaagcacgagaagactacaag	10	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19221630	G	G	19221630	3	3	54	1	0	0	0	0	1	0	0	0	14348	479	17	4	826	4	SH2D4A	8	19221630	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	670162	19221630	127142392	2160	58754											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19429519	19429519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttcccacatcaatggaaCttgccaatcatttcctattt	6	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19429519	A	A	19429519	1	1	54	0	1	0	0	0	0	0	0	0	3972	580	20	3		3	CSGALNACT1	8	19429519	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	207889	19429519	126934503	2161	58755											
TNFRSF10D	8793	broad.mit.edu	37	chr8	23002547	23002547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaacccacgaagccccCagtttctggagaaaccaact	7	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23002547	A	A	23002547	1	1	54	0	1	0	0	0	0	0	0	0	16406	609	21	2		2	TNFRSF10D	8	23002547	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3573028	23002547	123361475	2162	58756											
LOXL2	4017	broad.mit.edu	37	chr8	23198531	23198531	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actttggtattgtatgtcctCtccccagggaagccaaacat	8	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23198531	G	G	23198531	3	3	54	1	0	0	0	0	1	0	0	0	8987	912	32	4	1651	4	LOXL2	8	23198531	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	195984	23198531	123165491	2163	58757											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24242021	24242021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagaccacaacttcatgCtgcgtgggatctcccagcta	12	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24242021	A	A	24242021	3	1	54	1	0	0	0	0	1	0	0	0	254	796	28	3	6	3	ADAMDEC1	8	24242021	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1043490	24242021	122122001	2164	58758											
ADAM7	8756	broad.mit.edu	37	chr8	24357658	24357658	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaacacaacttatatcagtCatttgagaatatatcattga	5	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24357658	A	A	24357658	1	1	54	0	1	0	0	0	0	0	0	0	251	841	29	3		3	ADAM7	8	24357658	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	115637	24357658	122006364	2165	58759											
ADRA1A	148	broad.mit.edu	37	chr8	26705233	26705233	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagctcatgtgccctttgtCaaccttgcctccttctcctt	5	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26705233	T	T	26705233	1	4	54	0	1	0	0	0	0	0	0	0	334	841	29	4		4	ADRA1A	8	26705233	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2347575	26705233	119658789	2166	58760											
KIF13B	23303	broad.mit.edu	37	chr8	29006279	29006279	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttttctttttaggcaaaTtgagtcttggtgggaaaaag	10	4	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29006279	C	C	29006279	3	2	54	1	0	0	0	0	1	0	0	0	8345	1493	52	5	3952	5	KIF13B	8	29006279	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2301046	29006279	117357743	2167	58761											
WRN	7486	broad.mit.edu	37	chr8	30974033	30974033	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcatcataggtttgtaagaGatgaaattcaggtatgagga	11	3	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30974033	T	T	30974033	3	4	54	1	0	0	0	0	1	0	0	0	17529	942	33	3	2511	3	WRN	8	30974033	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1967754	30974033	115389989	2168	58762											
NRG1	3084	broad.mit.edu	37	chr8	32617815	32617816	+	Frame_Shift_Ins	INS	-	T	T													gcacagcagcccaactggggINSgcccaagaggacgtcttaat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32617816	T	T	32617815	7	5	54	1	0	1	1	0	0	0	0	0	10742	1232	43	0	2797	0	NRG1	8	32617815	Frame_Shift_Ins	INS	-	TCGA-17-Z022-01A-01W-0746-08	1643782	32617815	113746207	2169	58763											
UNC5D	137970	broad.mit.edu	37	chr8	35248740	35248740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacaaggttgtaaagtgCggaagaagccacctcgtgta	11	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35248740	A	A	35248740	1	1	54	0	1	0	0	0	0	0	0	0	17121	783	27	3		3	UNC5D	8	35248740	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2630925	35248740	111115282	2170	58764											
KCNU1	157855	broad.mit.edu	37	chr8	36664779	36664779	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctataacatgagaatagattTggaacacgtctagaagaaaa	8	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36664779	A	A	36664779	1	1	54	0	1	0	0	0	0	0	0	0	8163	1827	63	5		5	KCNU1	8	36664779	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1416039	36664779	109699243	2171	58765											
ADRB3	155	broad.mit.edu	37	chr8	37823637	37823637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcggtcacacacagcacGtccaccgaggtccacagctc	10	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37823637	T	T	37823637	3	4	54	1	0	0	0	0	1	0	0	0	342	1136	40	3	883	3	ADRB3	8	37823637	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1158858	37823637	108540385	2172	58766											
FGFR1	2260	broad.mit.edu	37	chr8	38286871	38286871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgatggagtggaagctGgccgagcaccacttagcctc	15	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38286871	T	T	38286871	1	4	54	0	1	0	0	0	0	0	0	0	5920	1363	47	2		2	FGFR1	8	38286871	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	463234	38286871	108077151	2173	58767											
FGFR1	2260	broad.mit.edu	37	chr8	38286887	38286887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggccgagcaccacttaGcctcctggagatctgggcaa	12	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38286887	T	T	38286887	1	4	54	0	1	0	0	0	0	0	0	0	5920	986	34	3		3	FGFR1	8	38286887	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16	38286887	108077135	2174	58768											
ADAM9	8754	broad.mit.edu	37	chr8	38961109	38961109	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaaacactctattaactatCtcttttcccctcgcaggcca	3	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38961109	G	G	38961109	1	3	54	0	1	0	0	0	0	0	0	0	253	928	32	4		4	ADAM9	8	38961109	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	674222	38961109	107402913	2175	58769											
ADAM18	8749	broad.mit.edu	37	chr8	39494695	39494695	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaacagctctagattacTtataatatctaatacaatgc	3	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39494695	C	C	39494695	1	2	54	0	1	0	0	0	0	0	0	0	239	1624	56	5		5	ADAM18	8	39494695	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	533586	39494695	106869327	2176	58770											
ZMAT4	79698	broad.mit.edu	37	chr8	40696102	40696102	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacccttctaatgcactcctCactctcctcgtcagctctgc	4	18	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40696102	A	A	40696102	1	1	54	0	1	0	0	0	0	0	0	0	17820	841	29	3		3	ZMAT4	8	40696102	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1201407	40696102	105667920	2177	58771											
ZMAT4	79698	broad.mit.edu	37	chr8	40721020	40721020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaacggtggtgcctttcaCtggggcagagaagaacacaa	14	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40721020	A	A	40721020	1	1	54	0	1	0	0	0	0	0	0	0	17820	580	20	3		3	ZMAT4	8	40721020	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	24918	40721020	105643002	2178	58772											
AP3M2	10947	broad.mit.edu	37	chr8	42020081	42020081	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcactgtgctgggtaCtgggaatggacgttaatatt	14	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42020081	T	T	42020081	1	4	54	0	1	0	0	0	0	0	0	0	750	580	20	4		4	AP3M2	8	42020081	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1299061	42020081	104343941	2179	58773											
PRKDC	5591	broad.mit.edu	37	chr8	48713330	48713330	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacatacacagcacactagCgtaaaacattcctccagtat	5	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48713330	G	G	48713330	1	3	54	0	1	0	0	0	0	0	0	0	12627	783	27	4		4	PRKDC	8	48713330	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6693249	48713330	97650692	2180	58774											
SNAI2	6591	broad.mit.edu	37	chr8	49833119	49833119	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacgtgattttcttaggaaGaagatagacccatttaggag	10	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49833119	T	T	49833119	1	4	54	0	1	0	0	0	0	0	0	0	14941	957	33	3		3	SNAI2	8	49833119	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1119789	49833119	96530903	2181	58775											
PXDNL	137902	broad.mit.edu	37	chr8	52258450	52258450	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggatagctgtattgagctGagcgtttcttttgagactct	11	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52258450	T	T	52258450	4	4	54	1	0	0	0	0	0	1	0	0	12956	1294	45	3	448	3	PXDNL	8	52258450	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2425331	52258450	94105572	2182	58776											
PXDNL	137902	broad.mit.edu	37	chr8	52433092	52433092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcggaagatccgaggacGgccacccaccatgtcctccc	9	18	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52433092	T	T	52433092	1	4	54	0	1	0	0	0	0	0	0	0	12956	1131	39	1		1	PXDNL	8	52433092	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	174642	52433092	93930930	2183	58777											
PXDNL	137902	broad.mit.edu	37	chr8	52438836	52438837	+	Intron	DNP	GC	AA	AA													cggcataacagagcatatcaGcaacagaaacagctctgttt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52438837	AA	AA	52438836	1	1	54	0	1	0	0	0	0	0	0	0	12956	986	34	4		4	PXDNL	8	52438836	Intron	DNP	GC	TCGA-17-Z022-01A-01W-0746-08	5744	52438836	93925186	2184	58778											
PCMTD1	115294	broad.mit.edu	37	chr8	52758236	52758236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacttatcaaagctatcaCtatttttgatgaagctctcc	4	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52758236	A	A	52758236	3	1	54	1	0	0	0	0	1	0	0	0	11680	565	20	3	694	3	PCMTD1	8	52758236	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	319400	52758236	93605786	2185	58779											
ST18	9705	broad.mit.edu	37	chr8	53062520	53062520	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaatgtgccattttcatcCacttctatttcggctccctg	5	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53062520	A	A	53062520	2	1	54	1	0	0	0	0	0	0	0	1	15330	581	21	2		2	ST18	8	53062520	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	304284	53062520	93301502	2186	58780											
ST18	9705	broad.mit.edu	37	chr8	53181228	53181228	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaataaatctagaggagcgGtaaaggaagaaaaagccaag	12	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53181228	C	C	53181228	1	2	54	0	1	0	0	0	0	0	0	0	15330	1276	44	4		4	ST18	8	53181228	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	118708	53181228	93182794	2187	58781											
LYPLA1	10434	broad.mit.edu	37	chr8	54978405	54978405	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcattgaataatgctattaGacactgttttaaatcccagt	5	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54978405	T	T	54978405	1	4	54	0	1	0	0	0	0	0	0	0	9204	957	33	3		3	LYPLA1	8	54978405	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1797177	54978405	91385617	2188	58782											
XKR4	114786	broad.mit.edu	37	chr8	56079304	56079304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctcagacagataacatcGcatgttcaagggcagcaaga	10	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56079304	T	T	56079304	1	4	54	0	1	0	0	0	0	0	0	0	17560	1102	38	3		3	XKR4	8	56079304	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1100899	56079304	90284718	2189	58783											
SDR16C5	195814	broad.mit.edu	37	chr8	57228789	57228789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatgaggactatttcacCagcaacgttcttccgtggct	10	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57228789	A	A	57228789	3	1	54	1	0	0	0	0	1	0	0	0	14084	594	21	2	835	2	SDR16C5	8	57228789	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1149485	57228789	89135233	2190	58784											
UBXN2B	137886	broad.mit.edu	37	chr8	59338573	59338573	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttctctgcttctttcccaGagaggtgtccctgaaaccac	7	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59338573	T	T	59338573	1	4	54	0	1	0	0	0	0	0	0	0	17041	957	33	3		3	UBXN2B	8	59338573	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2109784	59338573	87025449	2191	58785											
CHD7	55636	broad.mit.edu	37	chr8	61655554	61655554	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccactgcagcctcacccGggcttgcaccaccagtcttc	7	20	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61655554	A	A	61655554	2	1	54	1	0	0	0	0	0	0	0	1	3361	1103	39	4		4	CHD7	8	61655554	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2316981	61655554	84708468	2192	58786											
CLVS1	157807	broad.mit.edu	37	chr8	62213439	62213439	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagccatccttgactgcccCttgctttggtctttacatcc	8	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62213439	T	T	62213439	1	4	54	0	1	0	0	0	0	0	0	0	3603	696	24	4		4	CLVS1	8	62213439	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	557885	62213439	84150583	2193	58787											
NKAIN3	286183	broad.mit.edu	37	chr8	63229160	63229160	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccctatctctacaaaggaTatgaactcatcattttttat	3	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63229160	C	C	63229160	1	2	54	0	1	0	0	0	0	0	0	0	10532	1421	49	5		5	NKAIN3	8	63229160	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1015721	63229160	83134862	2194	58788											
NKAIN3	286183	broad.mit.edu	37	chr8	63596403	63596404	+	Intron	DNP	GG	TT	TT													gatgaagtaaagcagctctaGgaggcctccctgaatgagga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	63596404	TT	TT	63596403	1	4	54	0	1	0	0	0	0	0	0	0	10532	1015	35	2		2	NKAIN3	8	63596403	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	367243	63596403	82767619	2195	58789											
NKAIN3	286183	broad.mit.edu	37	chr8	63715874	63715874	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaacagaatatacatttTtttcagcaccacaccacacc	2	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63715874	C	C	63715874	1	2	54	0	1	0	0	0	0	0	0	0	10532	1856	64	5		5	NKAIN3	8	63715874	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	119471	63715874	82648148	2196	58790											
CYP7B1	9420	broad.mit.edu	37	chr8	65509357	65509357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttatttccataagtgCaaaaaatcggcctggacatt	7	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65509357	A	A	65509357	3	1	54	1	0	0	0	0	1	0	0	0	4230	710	25	3	161	3	CYP7B1	8	65509357	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1793483	65509357	80854665	2197	58791											
CYP7B1	9420	broad.mit.edu	37	chr8	65679289	65679289	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcactggaaggcccactgcCccagggaacgaaggtcctct	11	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65679289	T	T	65679289	1	4	54	0	1	0	0	0	0	0	0	0	4230	638	22	4		4	CYP7B1	8	65679289	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	169932	65679289	80684733	2198	58792											
MYBL1	4603	broad.mit.edu	37	chr8	67525021	67525021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctgagccgagacggcgCcgacaggcctgggcgaaagg	17	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67525021	A	A	67525021	1	1	54	0	1	0	0	0	0	0	0	0	10103	754	26	3		3	MYBL1	8	67525021	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1845732	67525021	78839001	2199	58793											
CSPP1	79848	broad.mit.edu	37	chr8	68076869	68076869	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatctccttactttccttttCtttgtcttttacaaaatcag	2	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68076869	G	G	68076869	1	3	54	0	1	0	0	0	0	0	0	0	3996	928	32	4		4	CSPP1	8	68076869	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	551848	68076869	78287153	2200	58794											
ARFGEF1	10565	broad.mit.edu	37	chr8	68188307	68188307	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtaaaatgtgggaaaacTtagcaccaggtgaaggtcct	11	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68188307	A	A	68188307	3	1	54	1	0	0	0	0	1	0	0	0	854	1609	56	5	4432	5	ARFGEF1	8	68188307	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	111438	68188307	78175715	2201	58795											
PREX2	80243	broad.mit.edu	37	chr8	69002967	69002967	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtaagtggcccttcagAtaatctggatctgagtgact	12	7	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69002967	T	T	69002967	1	4	54	0	1	0	0	0	0	0	0	0	12583	348	12	5		5	PREX2	8	69002967	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	814660	69002967	77361055	2202	58796											
PREX2	80243	broad.mit.edu	37	chr8	69095552	69095552	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgaacctaaaaagttattCtttggtatgaaaatgcagaa	7	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69095552	G	G	69095552	1	3	54	0	1	0	0	0	0	0	0	0	12583	928	32	4		4	PREX2	8	69095552	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92585	69095552	77268470	2203	58797											
SULF1	23213	broad.mit.edu	37	chr8	70515036	70515036	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggactagatagcatagattGaattcaactgtaaaaactgt	8	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70515036	A	A	70515036	1	1	54	0	1	0	0	0	0	0	0	0	15488	1305	45	4		4	SULF1	8	70515036	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1419484	70515036	75848986	2204	58798											
SULF1	23213	broad.mit.edu	37	chr8	70515355	70515355	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccaatgagtcactgctgTagaaaaagcagccctaagtg	11	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70515355	G	G	70515355	1	3	54	0	1	0	0	0	0	0	0	0	15488	1653	57	5		5	SULF1	8	70515355	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	319	70515355	75848667	2205	58799											
EYA1	2138	broad.mit.edu	37	chr8	72181967	72181967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaactgatgcctcttgGtactcaccctcccatatctg	5	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72181967	T	T	72181967	1	4	54	0	1	0	0	0	0	0	0	0	5371	1276	44	3		3	EYA1	8	72181967	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1666612	72181967	74182055	2206	58800											
EYA1	2138	broad.mit.edu	37	chr8	72229658	72229658	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgaatcaaactagaagcaGgtgtcctgcctctaagccca	9	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72229658	C	C	72229658	1	2	54	0	1	0	0	0	0	0	0	0	5371	1015	35	4		4	EYA1	8	72229658	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	47691	72229658	74134364	2207	58801											
KCNB2	9312	broad.mit.edu	37	chr8	73817044	73817044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcatcccttgctcaaatGcctccccacccctctctgcc	3	20	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73817044	T	T	73817044	1	4	54	0	1	0	0	0	0	0	0	0	8083	1334	46	3		3	KCNB2	8	73817044	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1587386	73817044	72546978	2208	58802											
KCNB2	9312	broad.mit.edu	37	chr8	73849145	73849145	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaggaggttagccaaaaaGactcccacgagcagctgaac	10	12	0	2	rs149424569		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73849145	A	A	73849145	3	1	54	1	0	0	0	0	1	0	0	0	8083	942	33	4	1561	4	KCNB2	8	73849145	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32101	73849145	72514877	2209	58803											
STAU2	27067	broad.mit.edu	37	chr8	74436592	74436592	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggagcaggcatggtagggGgacgcagggaacaaagagtt	18	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74436592	A	A	74436592	1	1	54	0	1	0	0	0	0	0	0	0	15391	1247	43	4		4	STAU2	8	74436592	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	587447	74436592	71927430	2210	58804											
ZFHX4	79776	broad.mit.edu	37	chr8	77732741	77732741	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgattatgacatgcttcatCtgattagtcatgcagcaaat	7	7	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77732741	T	T	77732741	1	4	54	0	1	0	0	0	0	0	0	0	17761	928	32	4		4	ZFHX4	8	77732741	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3296149	77732741	68631281	2211	58805											
ZFHX4	79776	broad.mit.edu	37	chr8	77761891	77761891	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaatgcatctccaactGcatctgacgcatttgcacag	6	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77761891	T	T	77761891	2	4	54	1	0	0	0	0	0	0	0	1	17761	1306	46	3		3	ZFHX4	8	77761891	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	29150	77761891	68602131	2212	58806											
ZFHX4	79776	broad.mit.edu	37	chr8	77766690	77766690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaactctggcaggaacaCcagcacatgcacttccttgc	9	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77766690	A	A	77766690	3	1	54	1	0	0	0	0	1	0	0	0	17761	506	18	3	7567	3	ZFHX4	8	77766690	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4799	77766690	68597332	2213	58807											
ZFHX4	79776	broad.mit.edu	37	chr8	77768370	77768370	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcgtataaagaaagcttcAgacgtgctgggcttgacggt	13	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77768370	G	G	77768370	2	3	54	1	0	0	0	0	0	0	0	1	17761	175	7	5		5	ZFHX4	8	77768370	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1680	77768370	68595652	2214	58808											
RALYL	138046	broad.mit.edu	37	chr8	85731311	85731311	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaattttctctatgtctgcAgggaaaaagggataaggaga	11	5	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85731311	T	T	85731311	1	4	54	0	1	0	0	0	0	0	0	0	13128	203	7	5		5	RALYL	8	85731311	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7962941	85731311	60632711	2215	58809											
LRRCC1	85444	broad.mit.edu	37	chr8	86042394	86042394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttttttgagacGgagtcttgctctgtcgtcca	8	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86042394	T	T	86042394	1	4	54	0	1	0	0	0	0	0	0	0	9113	1131	39	1		1	LRRCC1	8	86042394	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	311083	86042394	60321628	2216	58810											
CA13	377677	broad.mit.edu	37	chr8	86207276	86207276	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttccccaaataatgaaagGttctgttgtgctttgcagcc	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86207276	C	C	86207276	1	2	54	0	1	0	0	0	0	0	0	0	2540	1276	44	4		4	CA13	8	86207276	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	164882	86207276	60156746	2217	58811											
WWP1	11059	broad.mit.edu	37	chr8	87410497	87410497	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgaattagagtgattcttGaaatgtaggtttgatttctg	10	3	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87410497	C	C	87410497	1	2	54	0	1	0	0	0	0	0	0	0	17542	1305	45	4		4	WWP1	8	87410497	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1203221	87410497	58953525	2218	58812											
CNGB3	54714	broad.mit.edu	37	chr8	87670489	87670489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcggcactggccaCagctgagtttaaaaatgcca	8	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87670489	A	A	87670489	1	1	54	0	1	0	0	0	0	0	0	0	3633	493	17	3		3	CNGB3	8	87670489	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	259992	87670489	58693533	2219	58813											
CNGB3	54714	broad.mit.edu	37	chr8	87670507	87670507	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagctgagtttaaaaatgCcaccatggcctcccgactct	7	14	1	1	rs73271602	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87670507	G	G	87670507	1	3	54	0	1	0	0	0	0	0	0	0	3633	754	26	4		4	CNGB3	8	87670507	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18	87670507	58693515	2220	58814											
CNGB3	54714	broad.mit.edu	37	chr8	87738838	87738838	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgctgcattttgagggtCagggtttgtggtcagatctc	13	7	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87738838	G	G	87738838	3	3	54	1	0	0	0	0	1	0	0	0	3633	826	29	4	2234	4	CNGB3	8	87738838	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68331	87738838	58625184	2221	58815											
MMP16	4325	broad.mit.edu	37	chr8	89261924	89261924	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgagcaaacacctcctccAgacagtggctttagggagaa	10	12	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89261924	G	G	89261924	1	3	54	0	1	0	0	0	0	0	0	0	9748	203	7	5		5	MMP16	8	89261924	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1523086	89261924	57102098	2222	58816											
MMP16	4325	broad.mit.edu	37	chr8	89285426	89285426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtttgggcaatttctcttGcctcagcctcctgaggagct	11	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89285426	T	T	89285426	1	4	54	0	1	0	0	0	0	0	0	0	9748	1334	46	3		3	MMP16	8	89285426	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23502	89285426	57078596	2223	58817											
MMP16	4325	broad.mit.edu	37	chr8	89324145	89324145	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcaacccaaaatagacatCagaaataaaaagacttaaga	5	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89324145	A	A	89324145	1	1	54	0	1	0	0	0	0	0	0	0	9748	841	29	3		3	MMP16	8	89324145	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	38719	89324145	57039877	2224	58818											
SLC26A7	115111	broad.mit.edu	37	chr8	92289581	92289581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgtatgctcattatctgCcctgttcaatactgcatccc	5	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92289581	T	T	92289581	1	4	54	0	1	0	0	0	0	0	0	0	14636	754	26	4		4	SLC26A7	8	92289581	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2965436	92289581	54074441	2225	58819											
SLC26A7	115111	broad.mit.edu	37	chr8	92382506	92382506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttcaatctcctcctccCattttctttcttttcttctt	0	15	7	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92382506	A	A	92382506	1	1	54	0	1	0	0	0	0	0	0	0	14636	609	21	2		2	SLC26A7	8	92382506	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92925	92382506	53981516	2226	58820											
SLC26A7	115111	broad.mit.edu	37	chr8	92401582	92401582	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaagaagcttcacagtcCtgccctaatgagaagtgtta	9	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92401582	A	A	92401582	2	1	54	1	0	0	0	0	0	0	0	1	14636	668	24	2		2	SLC26A7	8	92401582	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	19076	92401582	53962440	2227	58821											
RUNX1T1	862	broad.mit.edu	37	chr8	92972768	92972768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagaaggcagaagaaaGcaagatcccaagttaataca	10	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92972768	T	T	92972768	1	4	54	0	1	0	0	0	0	0	0	0	13858	986	34	3		3	RUNX1T1	8	92972768	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	571186	92972768	53391254	2228	58822											
RUNX1T1	862	broad.mit.edu	37	chr8	93017350	93017350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccctctcacctgtctGgagttcgcctcttcccgttt	6	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93017350	T	T	93017350	3	4	54	1	0	0	0	0	1	0	0	0	13858	1348	47	2	1108	2	RUNX1T1	8	93017350	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	44582	93017350	53346672	2229	58823											
INTS8	55656	broad.mit.edu	37	chr8	95839416	95839416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtaggtattttcagcgaGgatatggaattttgtatgta	11	2	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95839416	T	T	95839416	1	4	54	0	1	0	0	0	0	0	0	0	7854	1015	35	2		2	INTS8	8	95839416	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2822066	95839416	50524606	2230	58824											
GDF6	392255	broad.mit.edu	37	chr8	97172668	97172668	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcggacccctgcctggcgGctcctgcgcccggggctgct	16	18	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97172668	C	C	97172668	3	2	54	1	0	0	0	0	1	0	0	0	6381	1203	42	4	1122	4	GDF6	8	97172668	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1333252	97172668	49191354	2231	58825											
UQCRB	7381	broad.mit.edu	37	chr8	97243333	97243333	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttcccgaataacctcttTcagatacggttcaaggtaga	7	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97243333	C	C	97243333	3	2	54	1	0	0	0	0	1	0	0	0	17144	1792	62	5	53	5	UQCRB	8	97243333	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	70665	97243333	49120689	2232	58826											
SDC2	6383	broad.mit.edu	37	chr8	97614353	97614353	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaaaatcttgtcaagcaggGagaaaaggaacatgcaagtg	11	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97614353	C	C	97614353	1	2	54	0	1	0	0	0	0	0	0	0	14065	1189	41	4		4	SDC2	8	97614353	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	371020	97614353	48749669	2233	58827											
PGCP	10404	broad.mit.edu	37	chr8	97746490	97746490	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggatcacattactccatctCtacaatcttctctttaagta	3	12	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97746490	G	G	97746490	1	3	54	0	1	0	0	0	0	0	0	0	11881	928	32	4		4	PGCP	8	97746490	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	132137	97746490	48617532	2234	58828											
PGCP	10404	broad.mit.edu	37	chr8	98155425	98155425	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcctagaaacagtaagaaaGaaacgttttcatgcttctgg	9	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98155425	C	C	98155425	1	2	54	0	1	0	0	0	0	0	0	0	11881	957	33	4		4	PGCP	8	98155425	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	408935	98155425	48208597	2235	58829											
STK3	6788	broad.mit.edu	37	chr8	99514066	99514066	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtttgaagtcaggtagcgTgatgcctccagctttgttct	11	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99514066	A	A	99514066	1	1	54	0	1	0	0	0	0	0	0	0	15413	1711	59	5		5	STK3	8	99514066	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1358641	99514066	46849956	2236	58830											
VPS13B	157680	broad.mit.edu	37	chr8	100148947	100148947	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggggctttttatatggatTacctgtatacaatggagaac	10	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100148947	G	G	100148947	3	3	54	1	0	0	0	0	1	0	0	0	17317	1754	61	5	1702	5	VPS13B	8	100148947	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	634881	100148947	46215075	2237	58831											
VPS13B	157680	broad.mit.edu	37	chr8	100481100	100481100	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcctcccctatatcaagtGatacttctctttggactatc	4	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100481100	T	T	100481100	1	4	54	0	1	0	0	0	0	0	0	0	17317	1305	45	3		3	VPS13B	8	100481100	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	332153	100481100	45882922	2238	58832											
VPS13B	157680	broad.mit.edu	37	chr8	100523447	100523447	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacatcaagaaatgagcgaaGaagttttcataagttatctg	8	5	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100523447	C	C	100523447	3	2	54	1	0	0	0	0	1	0	0	0	17317	942	33	4	4719	4	VPS13B	8	100523447	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	42347	100523447	45840575	2239	58833											
VPS13B	157680	broad.mit.edu	37	chr8	100729328	100729328	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattaatactcttcaaaaatAtagatagttctttcccaaac	2	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100729328	G	G	100729328	1	3	54	0	1	0	0	0	0	0	0	0	17317	464	16	5		5	VPS13B	8	100729328	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	205881	100729328	45634694	2240	58834											
NCALD	83988	broad.mit.edu	37	chr8	102726108	102726108	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagcttgcaccattccttctGaaactattccaaacaataga	5	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102726108	A	A	102726108	1	1	54	0	1	0	0	0	0	0	0	0	10296	1305	45	4		4	NCALD	8	102726108	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1996780	102726108	43637914	2241	58835											
BAALC	79870	broad.mit.edu	37	chr8	104197019	104197019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtggtgactcacccaGggcagaactggtgactgttc	13	10	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104197019	T	T	104197019	1	4	54	0	1	0	0	0	0	0	0	0	1284	1015	35	2		2	BAALC	8	104197019	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1470911	104197019	42167003	2242	58836											
DCAF13	25879	broad.mit.edu	37	chr8	104427471	104427471	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggacgcggaagcgactgcAcagctaaagaaccgcccctt	11	14	0	1	rs138240593		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104427471	C	C	104427471	3	2	54	1	0	0	0	0	1	0	0	0	4299	159	6	5	255	5	DCAF13	8	104427471	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	230452	104427471	41936551	2243	58837											
DCAF13	25879	broad.mit.edu	37	chr8	104455132	104455132	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtattcctaacaatcctgAtgtataattatttgttactt	5	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104455132	C	C	104455132	1	2	54	0	1	0	0	0	0	0	0	0	4299	348	12	5		5	DCAF13	8	104455132	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	27661	104455132	41908890	2244	58838											
RIMS2	9699	broad.mit.edu	37	chr8	104764621	104764621	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggtagcgtgatgcctcCagctttgttcttttggctta	11	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104764621	G	G	104764621	1	3	54	0	1	0	0	0	0	0	0	0	13479	609	21	4		4	RIMS2	8	104764621	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	309489	104764621	41599401	2245	58839											
RIMS2	9699	broad.mit.edu	37	chr8	104959731	104959731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctacaaacctgtacgagCatgttactgtgctgaatact	9	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104959731	A	A	104959731	1	1	54	0	1	0	0	0	0	0	0	0	13479	725	25	3		3	RIMS2	8	104959731	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	195110	104959731	41404291	2246	58840											
RIMS2	9699	broad.mit.edu	37	chr8	105260458	105260458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaactggagagggaaatGgggtcaggaaagggattttt	16	2	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105260458	T	T	105260458	1	4	54	0	1	0	0	0	0	0	0	0	13479	1363	47	2		2	RIMS2	8	105260458	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	300727	105260458	41103564	2247	58841											
TM7SF4	81501	broad.mit.edu	37	chr8	105351624	105351624	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggcatgaaaccaattattcGacctgtctggggtcatgagt	11	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105351624	C	C	105351624	1	2	54	0	1	0	0	0	0	0	0	0	16099	1073	37	4		4	TM7SF4	8	105351624	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	91166	105351624	41012398	2248	58842											
TM7SF4	81501	broad.mit.edu	37	chr8	105360984	105360984	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctcctggattatcacGtgtgttctgctgtgttgctc	11	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105360984	C	C	105360984	2	2	54	1	0	0	0	0	0	0	0	1	16099	1132	40	4		4	TM7SF4	8	105360984	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9360	105360984	41003038	2249	58843											
TM7SF4	81501	broad.mit.edu	37	chr8	105362280	105362280	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctctgcctctgtcttaaAgaatctgtatgactgtatta	6	9	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105362280	T	T	105362280	1	4	54	0	1	0	0	0	0	0	0	0	16099	87	3	5		5	TM7SF4	8	105362280	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1296	105362280	41001742	2250	58844											
DPYS	1807	broad.mit.edu	37	chr8	105393350	105393350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctcttcaacccttatgaGgagagatgctaatttcatat	7	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105393350	A	A	105393350	1	1	54	0	1	0	0	0	0	0	0	0	4786	1015	35	4		4	DPYS	8	105393350	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31070	105393350	40970672	2251	58845											
DPYS	1807	broad.mit.edu	37	chr8	105464730	105464730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaagtgaggacaattgtAcctaaaccataggcttgata	9	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105464730	T	T	105464730	1	4	54	0	1	0	0	0	0	0	0	0	4786	406	14	5		5	DPYS	8	105464730	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	71380	105464730	40899292	2252	58846											
ZFPM2	23414	broad.mit.edu	37	chr8	106399278	106399278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgtatttacaatccctTagctagacataaatgttctc	6	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106399278	C	C	106399278	1	2	54	0	1	0	0	0	0	0	0	0	17784	1769	61	5		5	ZFPM2	8	106399278	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	934548	106399278	39964744	2253	58847											
ZFPM2	23414	broad.mit.edu	37	chr8	106814271	106814271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactcaaactaagaagctctCcacctccagtaacaatgatg	5	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106814271	A	A	106814271	3	1	54	1	0	0	0	0	1	0	0	0	17784	855	30	3	1991	3	ZFPM2	8	106814271	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	414993	106814271	39549751	2254	58848											
OXR1	55074	broad.mit.edu	37	chr8	107382353	107382353	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccttcacatcccttcttaGctgtgtttctaggtatttta	6	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107382353	T	T	107382353	1	4	54	0	1	0	0	0	0	0	0	0	11428	986	34	3		3	OXR1	8	107382353	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	568082	107382353	38981669	2255	58849											
TMEM74	157753	broad.mit.edu	37	chr8	109797348	109797348	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagctagtcagacatcccCcagcagcttccggaaagtct	10	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109797348	A	A	109797348	1	1	54	0	1	0	0	0	0	0	0	0	16325	638	22	2		2	TMEM74	8	109797348	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2414995	109797348	36566674	2256	58850											
TRHR	7201	broad.mit.edu	37	chr8	110108405	110108405	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccaacttacatattaCgctccagcaattctgaatta	3	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110108405	G	G	110108405	1	3	54	0	1	0	0	0	0	0	0	0	16604	551	19	4		4	TRHR	8	110108405	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	311057	110108405	36255617	2257	58851											
PKHD1L1	93035	broad.mit.edu	37	chr8	110408292	110408292	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccttcacaaggaagcattcGaggtggcaccacgctgacaa	10	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110408292	A	A	110408292	3	1	54	1	0	0	0	0	1	0	0	0	12067	1058	37	4	890	4	PKHD1L1	8	110408292	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	299887	110408292	35955730	2258	58852											
CSMD3	114788	broad.mit.edu	37	chr8	113243849	113243849	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacataagtagctccatcagGctcagcagaaacctaaaaat	6	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113243849	A	A	113243849	3	1	54	1	0	0	0	0	1	0	0	0	3980	1203	42	4	382	4	CSMD3	8	113243849	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2835557	113243849	33120173	2259	58853											
CSMD3	114788	broad.mit.edu	37	chr8	113249435	113249435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacctgaaagtagcagctcCatgttgctattgctcagtgt	9	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113249435	A	A	113249435	3	1	54	1	0	0	0	0	1	0	0	0	3980	594	21	2	532	2	CSMD3	8	113249435	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5586	113249435	33114587	2260	58854											
CSMD3	114788	broad.mit.edu	37	chr8	113249507	113249507	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagtaactgttaaggtcatGggttgtttccttcctttgaa	9	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113249507	T	T	113249507	2	4	54	1	0	0	0	0	0	0	0	1	3980	1335	47	2		2	CSMD3	8	113249507	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	72	113249507	33114515	2261	58855											
CSMD3	114788	broad.mit.edu	37	chr8	113253960	113253960	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attactaaccacttagctttGggctgggtgttcccagtgca	10	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113253960	C	C	113253960	3	2	54	1	0	0	0	0	1	0	0	0	3980	1348	47	4	690	4	CSMD3	8	113253960	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4453	113253960	33110062	2262	58856											
CSMD3	114788	broad.mit.edu	37	chr8	113569224	113569224	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattaaaggcaaaatttaggAggaggatttaaatctataca	9	3	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113569224	G	G	113569224	1	3	54	0	1	0	0	0	0	0	0	0	3980	319	11	5		5	CSMD3	8	113569224	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	315264	113569224	32794798	2263	58857											
CSMD3	114788	broad.mit.edu	37	chr8	113697681	113697681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgacattgagtggtcagcCtgaaattccaatcgcagtat	9	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113697681	A	A	113697681	3	1	54	1	0	0	0	0	1	0	0	0	3980	680	24	2	8915	2	CSMD3	8	113697681	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	128457	113697681	32666341	2264	58858											
CSMD3	114788	broad.mit.edu	37	chr8	113725835	113725835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactacatgagaagatcaaCcccaagatacacaatcagat	6	10	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113725835	A	A	113725835	1	1	54	0	1	0	0	0	0	0	0	0	3980	522	18	3		3	CSMD3	8	113725835	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	28154	113725835	32638187	2265	58859											
CSMD3	114788	broad.mit.edu	37	chr8	113727805	113727805	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccctaatgcattttttgAggccagcatcatcctgatac	6	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113727805	T	T	113727805	1	4	54	0	1	0	0	0	0	0	0	0	3980	319	11	5		5	CSMD3	8	113727805	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1970	113727805	32636217	2266	58860											
CSMD3	114788	broad.mit.edu	37	chr8	113841973	113841973	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcgccaattgtcaaggtatCatagccaatctccagatcaa	6	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113841973	T	T	113841973	3	4	54	1	0	0	0	0	1	0	0	0	3980	826	29	4	9562	4	CSMD3	8	113841973	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	114168	113841973	32522049	2267	58861											
CSMD3	114788	broad.mit.edu	37	chr8	113842009	113842009	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaaattcttcaaaatttaTctggataacctagcagtaaa	4	7	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113842009	C	C	113842009	3	2	54	1	0	0	0	0	1	0	0	0	3980	1435	50	5	9598	5	CSMD3	8	113842009	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	36	113842009	32522013	2268	58862											
CSMD3	114788	broad.mit.edu	37	chr8	113882020	113882020	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaacacagaaacagaaaatCaaacaccacatgttctcact	3	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113882020	A	A	113882020	1	1	54	0	1	0	0	0	0	0	0	0	3980	841	29	3		3	CSMD3	8	113882020	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	40011	113882020	32482002	2269	58863											
CSMD3	114788	broad.mit.edu	37	chr8	113933644	113933644	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacatactttattcttcagtCtatgttgtatgattattaat	4	5	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113933644	A	A	113933644	1	1	54	0	1	0	0	0	0	0	0	0	3980	928	32	3		3	CSMD3	8	113933644	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	51624	113933644	32430378	2270	58864											
CSMD3	114788	broad.mit.edu	37	chr8	113935050	113935050	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaatccgtataaccaaagaGagattatatttacagtcttc	5	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113935050	T	T	113935050	1	4	54	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113935050	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1406	113935050	32428972	2271	58865											
CSMD3	114788	broad.mit.edu	37	chr8	114431624	114431624	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagtgctgggattacaGgcgtgaaccactgtgcccgg	13	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114431624	A	A	114431624	1	1	54	0	1	0	0	0	0	0	0	0	3980	1015	35	4		4	CSMD3	8	114431624	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	496574	114431624	31932398	2272	58866											
SLC30A8	169026	broad.mit.edu	37	chr8	118111182	118111182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccagagacaccaagtggGgagtgaaattacttgggtac	12	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118111182	T	T	118111182	1	4	54	0	1	0	0	0	0	0	0	0	14675	1247	43	2		2	SLC30A8	8	118111182	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3679558	118111182	28252840	2273	58867											
SAMD12	401474	broad.mit.edu	37	chr8	119278459	119278459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatccaatcacctcccacCaggtctgtcccttgacacat	5	16	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119278459	A	A	119278459	1	1	54	0	1	0	0	0	0	0	0	0	13928	609	21	2		2	SAMD12	8	119278459	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1167277	119278459	27085563	2274	58868											
SAMD12	401474	broad.mit.edu	37	chr8	119545433	119545433	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgccttcatttcgttaaTgtacccagtagtcattcagg	7	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119545433	C	C	119545433	1	2	54	0	1	0	0	0	0	0	0	0	13928	1479	51	5		5	SAMD12	8	119545433	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	266974	119545433	26818589	2275	58869											
TAF2	6873	broad.mit.edu	37	chr8	120814113	120814113	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgctgctgtaggaatggtaAgcatataatggaaagttttc	11	5	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120814113	G	G	120814113	3	3	54	1	0	0	0	0	1	0	0	0	15643	72	3	5	2970	5	TAF2	8	120814113	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1268680	120814113	25549909	2276	58870											
SNTB1	6641	broad.mit.edu	37	chr8	121757592	121757592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggtcacacctctactcCagcattccatccatttcctg	5	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121757592	A	A	121757592	1	1	54	0	1	0	0	0	0	0	0	0	14986	609	21	2		2	SNTB1	8	121757592	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	943479	121757592	24606430	2277	58871											
FAM83A	84985	broad.mit.edu	37	chr8	124203855	124203855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcaggacaggcgcaggggCctccactccagctcttcctt	10	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124203855	A	A	124203855	1	1	54	0	1	0	0	0	0	0	0	0	5686	754	26	3		3	FAM83A	8	124203855	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2446263	124203855	22160167	2278	58872											
FER1L6	654463	broad.mit.edu	37	chr8	124925230	124925230	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcttcaccaggtgaatgtGgtaactgtcataactgagga	10	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124925230	A	A	124925230	1	1	54	0	1	0	0	0	0	0	0	0	5872	1363	47	4		4	FER1L6	8	124925230	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	721375	124925230	21438792	2279	58873											
FER1L6	654463	broad.mit.edu	37	chr8	125127590	125127590	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtgaagaacgatacccaGagcagcggcatttatcgaag	11	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125127590	T	T	125127590	1	4	54	0	1	0	0	0	0	0	0	0	5872	957	33	3		3	FER1L6	8	125127590	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	202360	125127590	21236432	2280	58874											
NSMCE2	286053	broad.mit.edu	37	chr8	126179325	126179325	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccacatgtactctcacaCaaagactggagcaaggcaga	8	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126179325	G	G	126179325	1	3	54	0	1	0	0	0	0	0	0	0	10771	493	17	4		4	NSMCE2	8	126179325	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1051735	126179325	20184697	2281	58875											
ASAP1	50807	broad.mit.edu	37	chr8	131130908	131130908	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atactttgcagtgatatattCttttcgtacagtcctaaaac	5	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131130908	A	A	131130908	4	1	54	1	0	0	0	0	0	1	0	0	1014	922	32	3	1816	3	ASAP1	8	131130908	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4951583	131130908	15233114	2282	58876											
ADCY8	114	broad.mit.edu	37	chr8	132022325	132022325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacagcttagatagctcaCctaacttgcccaagaattac	6	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132022325	A	A	132022325	1	1	54	0	1	0	0	0	0	0	0	0	300	522	18	3		3	ADCY8	8	132022325	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	891417	132022325	14341697	2283	58877											
OC90	729330	broad.mit.edu	37	chr8	133062304	133062304	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttacctctaccattgtgtCaccctaacaagtcacttaac	3	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133062304	A	A	133062304	1	1	54	0	1	0	0	0	0	0	0	0	10909	841	29	3		3	OC90	8	133062304	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1039979	133062304	13301718	2284	58878											
TMEM71	137835	broad.mit.edu	37	chr8	133745791	133745791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaaattcctactaaccCtgcaggcttccttgcactgc	8	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133745791	A	A	133745791	1	1	54	0	1	0	0	0	0	0	0	0	16323	696	24	2		2	TMEM71	8	133745791	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	683487	133745791	12618231	2285	58879											
TMEM71	137835	broad.mit.edu	37	chr8	133771213	133771213	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatattaaaaatagaaaaatTatgccaaaacagatggcatc	5	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133771213	C	C	133771213	1	2	54	0	1	0	0	0	0	0	0	0	16323	1769	61	5		5	TMEM71	8	133771213	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	25422	133771213	12592809	2286	58880											
PHF20L1	51105	broad.mit.edu	37	chr8	133849871	133849871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaagaagccaagccagcCaattcaaagaaagggcatgt	10	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133849871	A	A	133849871	1	1	54	0	1	0	0	0	0	0	0	0	11927	609	21	2		2	PHF20L1	8	133849871	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	78658	133849871	12514151	2287	58881											
TG	7038	broad.mit.edu	37	chr8	133898502	133898502	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caactggaaaagtcacacttCcaaaatggccccacaaaggc	7	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133898502	A	A	133898502	1	1	54	0	1	0	0	0	0	0	0	0	15936	870	30	3		3	TG	8	133898502	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	48631	133898502	12465520	2288	58882											
TG	7038	broad.mit.edu	37	chr8	133900459	133900459	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctgacgcctgccaagctgCtagtgaagatcatgagctac	10	11	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133900459	G	G	133900459	3	3	54	1	0	0	0	0	1	0	0	0	15936	796	28	4	2445	4	TG	8	133900459	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1957	133900459	12463563	2289	58883											
TG	7038	broad.mit.edu	37	chr8	133925541	133925541	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctccctggatatctcctGtggagccatgtgaggcttta	10	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133925541	T	T	133925541	1	4	54	0	1	0	0	0	0	0	0	0	15936	1392	48	3		3	TG	8	133925541	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	25082	133925541	12438481	2290	58884											
TG	7038	broad.mit.edu	37	chr8	133929530	133929530	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagccagggtggtcagggcAggtgtgctggggtaggaaat	19	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133929530	G	G	133929530	1	3	54	0	1	0	0	0	0	0	0	0	15936	203	7	5		5	TG	8	133929530	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3989	133929530	12434492	2291	58885											
TG	7038	broad.mit.edu	37	chr8	133995598	133995598	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctttttccttttcagttgCtcaaaataatgctcccagtt	5	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133995598	G	G	133995598	3	3	54	1	0	0	0	0	1	0	0	0	15936	797	28	4	6341	4	TG	8	133995598	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	66068	133995598	12368424	2292	58886											
TG	7038	broad.mit.edu	37	chr8	134034470	134034470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttccccaagacccatccCctcactgcccctgctcctcc	3	23	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134034470	A	A	134034470	1	1	54	0	1	0	0	0	0	0	0	0	15936	638	22	2		2	TG	8	134034470	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	38872	134034470	12329552	2293	58887											
TG	7038	broad.mit.edu	37	chr8	134068025	134068025	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccagggcttctcagacttCagttgttttcattccaccat	6	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134068025	T	T	134068025	1	4	54	0	1	0	0	0	0	0	0	0	15936	841	29	4		4	TG	8	134068025	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	33555	134068025	12295997	2294	58888											
TG	7038	broad.mit.edu	37	chr8	134072265	134072265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccatttaagtagttacCggcatccaccaccgcccagt	7	16	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134072265	A	A	134072265	1	1	54	0	1	0	0	0	0	0	0	0	15936	667	23	1		1	TG	8	134072265	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4240	134072265	12291757	2295	58889											
TG	7038	broad.mit.edu	37	chr8	134143939	134143939	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaacaggatacttggatatGatataaagaagggaaagtct	10	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134143939	A	A	134143939	1	1	54	0	1	0	0	0	0	0	0	0	15936	1305	45	4		4	TG	8	134143939	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	71674	134143939	12220083	2296	58890											
WISP1	8840	broad.mit.edu	37	chr8	134217387	134217387	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctcagaggctgcagcaGgcagaagtgagcaggaccag	17	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134217387	A	A	134217387	1	1	54	0	1	0	0	0	0	0	0	0	17499	1015	35	4		4	WISP1	8	134217387	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	73448	134217387	12146635	2297	58891											
ZFAT	57623	broad.mit.edu	37	chr8	135568501	135568501	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatacaaactatacaaactGaaacataaaaagaagaatta	3	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135568501	A	A	135568501	1	1	54	0	1	0	0	0	0	0	0	0	17758	1305	45	4		4	ZFAT	8	135568501	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1351114	135568501	10795521	2298	58892											
ZFAT	57623	broad.mit.edu	37	chr8	135614378	135614378	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctcttccttgagtgcattCacgccctggagggcaaactc	10	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135614378	T	T	135614378	2	4	54	1	0	0	0	0	0	0	0	1	17758	813	29	4		4	ZFAT	8	135614378	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45877	135614378	10749644	2299	58893											
FAM135B	51059	broad.mit.edu	37	chr8	139153486	139153486	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacagggttcccaggtgagGcccagagagtgacaggaacg	16	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139153486	A	A	139153486	3	1	54	1	0	0	0	0	1	0	0	0	5495	1203	42	4	491	4	FAM135B	8	139153486	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3539108	139153486	7210536	2300	58894											
FAM135B	51059	broad.mit.edu	37	chr8	139190692	139190692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagatctagaggccaatcCtaatgcttgatctaattctc	7	10	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139190692	A	A	139190692	1	1	54	0	1	0	0	0	0	0	0	0	5495	696	24	2		2	FAM135B	8	139190692	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37206	139190692	7173330	2301	58895											
FAM135B	51059	broad.mit.edu	37	chr8	139196897	139196897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactgctgcagaaaagacCgggcagagaagagttgaacc	13	9	0	5	rs151270726	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139196897	A	A	139196897	1	1	54	0	1	0	0	0	0	0	0	0	5495	667	23	1		1	FAM135B	8	139196897	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6205	139196897	7167125	2302	58896											
FAM135B	51059	broad.mit.edu	37	chr8	139263361	139263361	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgggccaagcaccatgcatAcatcatctcgttcaatcctg	7	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139263361	T	T	139263361	1	4	54	0	1	0	0	0	0	0	0	0	5495	406	14	5		5	FAM135B	8	139263361	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	66464	139263361	7100661	2303	58897											
FAM135B	51059	broad.mit.edu	37	chr8	139400071	139400071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccctactcctaaaatacCttcactagtggtctccctgc	4	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139400071	A	A	139400071	1	1	54	0	1	0	0	0	0	0	0	0	5495	696	24	2		2	FAM135B	8	139400071	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	136710	139400071	6963951	2304	58898											
COL22A1	169044	broad.mit.edu	37	chr8	139606341	139606341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatggggccggcccggcCtggaagcccatcttttccag	12	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139606341	A	A	139606341	3	1	54	1	0	0	0	0	1	0	0	0	3713	681	24	2	358	2	COL22A1	8	139606341	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	206270	139606341	6757681	2305	58899											
COL22A1	169044	broad.mit.edu	37	chr8	139705968	139705968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaaataaaagaggggcgGgggtaagacaccctcagtga	15	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139705968	T	T	139705968	1	4	54	0	1	0	0	0	0	0	0	0	3713	1247	43	2		2	COL22A1	8	139705968	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	99627	139705968	6658054	2306	58900											
KCNK9	51305	broad.mit.edu	37	chr8	140631448	140631448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgcaatgcagagggacCtggtactgggggaatttcct	15	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140631448	A	A	140631448	1	1	54	0	1	0	0	0	0	0	0	0	8142	696	24	2		2	KCNK9	8	140631448	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	925480	140631448	5732574	2307	58901											
PTK2	5747	broad.mit.edu	37	chr8	141851093	141851093	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatcaggcatagagaagatCactacataatgatgcaaaat	7	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141851093	A	A	141851093	1	1	54	0	1	0	0	0	0	0	0	0	12868	841	29	3		3	PTK2	8	141851093	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1219645	141851093	4512929	2308	58902											
DENND3	22898	broad.mit.edu	37	chr8	142161885	142161885	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggatttcgtcatggccccCacgtccttcctgatgggctg	11	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142161885	T	T	142161885	2	4	54	1	0	0	0	0	0	0	0	1	4472	581	21	4		4	DENND3	8	142161885	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	310792	142161885	4202137	2309	58903											
FLJ43860	389690	broad.mit.edu	37	chr8	142470562	142470562	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaattccttcagggtgatgCcaggttctatgtggaattta	11	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142470562	T	T	142470562	1	4	54	0	1	0	0	0	0	0	0	0	5987	754	26	4		4	FLJ43860	8	142470562	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	308677	142470562	3893460	2310	58904											
BAI1	575	broad.mit.edu	37	chr8	143558745	143558745	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccttccgtccctctgcaGtgcatggtgcctgggatgag	13	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143558745	T	T	143558745	5	4	54	1	0	0	0	0	0	0	1	0	1303	1043	36	3	1240	3	BAI1	8	143558745	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1088183	143558745	2805277	2311	58905											
GPIHBP1	338328	broad.mit.edu	37	chr8	144297147	144297147	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcccagagtcaggcctcctGaccacccactccacgtggtg	9	17	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144297147	T	T	144297147	2	4	54	1	0	0	0	0	0	0	0	1	6677	1277	45	3		3	GPIHBP1	8	144297147	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	738402	144297147	2066875	2312	58906											
SPATC1	375686	broad.mit.edu	37	chr8	145101742	145101742	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctacaccgtggacttccTgcagcgtgtggtggtggaga	14	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145101742	A	A	145101742	3	1	54	1	0	0	0	0	1	0	0	0	15133	1580	55	5	1679	5	SPATC1	8	145101742	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	804595	145101742	1262280	2313	58907											
ARHGAP39	80728	broad.mit.edu	37	chr8	145830368	145830368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagcctagaaatcagggCagagcagtggctcacgtctg	12	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145830368	A	A	145830368	1	1	54	0	1	0	0	0	0	0	0	0	886	725	25	3		3	ARHGAP39	8	145830368	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	728626	145830368	533654	2314	58908											
DOCK8	81704	broad.mit.edu	37	chr9	325531	325531	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctattaatatcccagtgcGattctcatatacttggagtt	6	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	325531	T	T	325531	1	4	54	0	1	0	0	0	0	0	0	0	4733	1073	37	3		3	DOCK8	9	325531	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		325531	140887900	2315	58909											
DMRT3	58524	broad.mit.edu	37	chr9	990773	990773	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccctgtggaacaccatgaCgctgcagcagcagtatcagc	10	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	990773	T	T	990773	3	4	54	1	0	0	0	0	1	0	0	0	4627	536	19	4	1193	4	DMRT3	9	990773	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	665242	990773	140222658	2316	58910											
DMRT3	58524	broad.mit.edu	37	chr9	991129	991129	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaaagtgactgtgcttgaTtctatacattagcaataaaa	7	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	991129	A	A	991129	1	1	54	0	1	0	0	0	0	0	0	0	4627	1508	52	5		5	DMRT3	9	991129	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	356	991129	140222302	2317	58911											
RFX3	5991	broad.mit.edu	37	chr9	3228777	3228777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtgttgtaaacatatacCgtattttcctctgtaagaac	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3228777	A	A	3228777	1	1	54	0	1	0	0	0	0	0	0	0	13372	667	23	1		1	RFX3	9	3228777	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2237648	3228777	137984654	2318	58912											
C9orf46	55848	broad.mit.edu	37	chr9	5494396	5494396	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcaccagaaagagaaaAgaagttcaaagtagagggaa	12	4	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5494396	T	T	5494396	1	4	54	0	1	0	0	0	0	0	0	0	2510	87	3	5		5	C9orf46	9	5494396	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2265619	5494396	135719035	2319	58913											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5563102	5563102	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtcctgccatattttaatCtataagccaaacagttttct	4	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5563102	G	G	5563102	1	3	54	0	1	0	0	0	0	0	0	0	11712	928	32	4		4	PDCD1LG2	9	5563102	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68706	5563102	135650329	2320	58914											
KIAA1432	57589	broad.mit.edu	37	chr9	5656667	5656667	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaagctgaatggaggccaGatagtaccatgatagctgta	12	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5656667	T	T	5656667	1	4	54	0	1	0	0	0	0	0	0	0	8303	957	33	3		3	KIAA1432	9	5656667	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	93565	5656667	135556764	2321	58915											
KIAA2026	158358	broad.mit.edu	37	chr9	5922999	5922999	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgggtttggtccctttctgGagagtagacactggtactga	13	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5922999	A	A	5922999	2	1	54	1	0	0	0	0	0	0	0	1	8340	1161	41	4		4	KIAA2026	9	5922999	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	266332	5922999	135290432	2322	58916											
GLDC	2731	broad.mit.edu	37	chr9	6540209	6540209	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgttttacccaaacaaatGaataagtaatttaataaata	3	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6540209	C	C	6540209	1	2	54	0	1	0	0	0	0	0	0	0	6497	1305	45	4		4	GLDC	9	6540209	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	617210	6540209	134673222	2323	58917											
GLDC	2731	broad.mit.edu	37	chr9	6589358	6589358	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccacatgtggacatccaggCttctgggtggctgggccaca	14	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6589358	G	G	6589358	1	3	54	0	1	0	0	0	0	0	0	0	6497	812	28	4		4	GLDC	9	6589358	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	49149	6589358	134624073	2324	58918											
KDM4C	23081	broad.mit.edu	37	chr9	7094491	7094491	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaatttatctcatctagaaGacgaatctacaaactcactg	4	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7094491	T	T	7094491	1	4	54	0	1	0	0	0	0	0	0	0	8200	957	33	3		3	KDM4C	9	7094491	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	505133	7094491	134118940	2325	58919											
PTPRD	5789	broad.mit.edu	37	chr9	8317810	8317810	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaagtgccctgtatggCtcagaagagactccatggat	10	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8317810	A	A	8317810	1	1	54	0	1	0	0	0	0	0	0	0	12907	812	28	3		3	PTPRD	9	8317810	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1223319	8317810	132895621	2326	58920											
PTPRD	5789	broad.mit.edu	37	chr9	8395558	8395558	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcaaacatttattgcaaaGacacagtctattgtttgcca	6	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8395558	C	C	8395558	1	2	54	0	1	0	0	0	0	0	0	0	12907	957	33	4		4	PTPRD	9	8395558	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	77748	8395558	132817873	2327	58921											
PTPRD	5789	broad.mit.edu	37	chr9	8465578	8465578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccccagggtgaactcaGtgggaaggacatcaaagtga	12	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8465578	T	T	8465578	3	4	54	1	0	0	0	0	1	0	0	0	12907	1029	36	3	2261	3	PTPRD	9	8465578	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	70020	8465578	132747853	2328	58922											
PTPRD	5789	broad.mit.edu	37	chr9	8484291	8484291	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgtcagcacaaatgaatAtgatttctcaggcttcaggt	8	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8484291	G	G	8484291	3	3	54	1	0	0	0	0	1	0	0	0	12907	449	16	5	2630	5	PTPRD	9	8484291	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	18713	8484291	132729140	2329	58923											
PTPRD	5789	broad.mit.edu	37	chr9	8493144	8493144	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgctatggagatctgttttCatgctgatatcgaaggggca	12	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8493144	A	A	8493144	1	1	54	0	1	0	0	0	0	0	0	0	12907	841	29	3		3	PTPRD	9	8493144	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8853	8493144	132720287	2330	58924											
PTPRD	5789	broad.mit.edu	37	chr9	8517911	8517911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccaattgaggtaaaagCcaggactttgacagaatatg	9	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8517911	A	A	8517911	3	1	54	1	0	0	0	0	1	0	0	0	12907	739	26	3	4430	3	PTPRD	9	8517911	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	24767	8517911	132695520	2331	58925											
PTPRD	5789	broad.mit.edu	37	chr9	8525182	8525182	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttgctaagttgcacagacAgaaaatgatgcgatgagaaa	10	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8525182	T	T	8525182	1	4	54	0	1	0	0	0	0	0	0	0	12907	203	7	5		5	PTPRD	9	8525182	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7271	8525182	132688249	2332	58926											
PTPRD	5789	broad.mit.edu	37	chr9	8636689	8636689	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagagaaacagaacaatgGacctaatacctcaaatctct	5	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8636689	T	T	8636689	1	4	54	0	1	0	0	0	0	0	0	0	12907	1189	41	3		3	PTPRD	9	8636689	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	111507	8636689	132576742	2333	58927											
PTPRD	5789	broad.mit.edu	37	chr9	8951384	8951384	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggctcaggcttcagtctTtcttctctttcctccttaac	6	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8951384	A	A	8951384	1	1	54	0	1	0	0	0	0	0	0	0	12907	1856	64	5		5	PTPRD	9	8951384	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	314695	8951384	132262047	2334	58928											
PTPRD	5789	broad.mit.edu	37	chr9	9196947	9196947	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caatatcagacaaggtcaatCtttgaccatgatagatctag	7	8	4	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9196947	T	T	9196947	1	4	54	0	1	0	0	0	0	0	0	0	12907	928	32	4		4	PTPRD	9	9196947	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	245563	9196947	132016484	2335	58929											
PTPRD	5789	broad.mit.edu	37	chr9	9262924	9262924	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttacttagagttcctaaCaattttggtgtcataaacgt	6	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9262924	A	A	9262924	1	1	54	0	1	0	0	0	0	0	0	0	12907	493	17	3		3	PTPRD	9	9262924	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	65977	9262924	131950507	2336	58930											
PTPRD	5789	broad.mit.edu	37	chr9	9369534	9369534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcagatgggtagattgCaaacattttctcccattctg	8	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9369534	A	A	9369534	1	1	54	0	1	0	0	0	0	0	0	0	12907	725	25	3		3	PTPRD	9	9369534	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	106610	9369534	131843897	2337	58931											
PTPRD	5789	broad.mit.edu	37	chr9	9889817	9889817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtatgtGtgtgtgtgtgtctgtgtgtg	19	1	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9889817	T	T	9889817	1	4	54	0	1	0	0	0	0	0	0	0	12907	1392	48	3		3	PTPRD	9	9889817	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	520283	9889817	131323614	2338	58932											
PTPRD	5789	broad.mit.edu	37	chr9	9913714	9913714	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctatgtaaacatctacagtCtcatacaacaggagaacttc	5	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9913714	A	A	9913714	1	1	54	0	1	0	0	0	0	0	0	0	12907	928	32	3		3	PTPRD	9	9913714	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	23897	9913714	131299717	2339	58933											
PTPRD	5789	broad.mit.edu	37	chr9	9918773	9918773	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatagccatctgatttttgGcatgggtatcgagaatattc	9	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9918773	T	T	9918773	1	4	54	0	1	0	0	0	0	0	0	0	12907	1218	42	3		3	PTPRD	9	9918773	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5059	9918773	131294658	2340	58934											
PTPRD	5789	broad.mit.edu	37	chr9	10155375	10155375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatagggcttcctagatatGgagtcatgttgtctgccaac	10	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10155375	T	T	10155375	1	4	54	0	1	0	0	0	0	0	0	0	12907	1363	47	2		2	PTPRD	9	10155375	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	236602	10155375	131058056	2341	58935											
PTPRD	5789	broad.mit.edu	37	chr9	10554942	10554942	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgctgggattacaggcgtGagccaccgctccaggctata	13	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10554942	T	T	10554942	1	4	54	0	1	0	0	0	0	0	0	0	12907	1305	45	3		3	PTPRD	9	10554942	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	399567	10554942	130658489	2342	58936											
MPDZ	8777	broad.mit.edu	37	chr9	13125615	13125615	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccatggttaatttctactCtaagtctagctctgaccaca	7	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13125615	G	G	13125615	1	3	54	0	1	0	0	0	0	0	0	0	9816	928	32	4		4	MPDZ	9	13125615	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2570673	13125615	128087816	2343	58937											
ZDHHC21	340481	broad.mit.edu	37	chr9	14566744	14566744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtgaatatctttctcccCcagaagcctggagagattaa	8	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14566744	A	A	14566744	1	1	54	0	1	0	0	0	0	0	0	0	17738	638	22	2		2	ZDHHC21	9	14566744	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1441129	14566744	126646687	2344	58938											
FREM1	158326	broad.mit.edu	37	chr9	14746750	14746750	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttaactaacatattttgTgatttttaaaaagccacttt	4	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14746750	C	C	14746750	1	2	54	0	1	0	0	0	0	0	0	0	6104	1711	59	5		5	FREM1	9	14746750	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	180006	14746750	126466681	2345	58939											
FREM1	158326	broad.mit.edu	37	chr9	14779644	14779644	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcttatgatccaggctGtccatctcaaacccctccct	6	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14779644	C	C	14779644	1	2	54	0	1	0	0	0	0	0	0	0	6104	1392	48	4		4	FREM1	9	14779644	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32894	14779644	126433787	2346	58940											
FREM1	158326	broad.mit.edu	37	chr9	14824780	14824780	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaactagtagcccaaatggtGacttttcagatacctgtggc	10	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14824780	C	C	14824780	1	2	54	0	1	0	0	0	0	0	0	0	6104	1305	45	4		4	FREM1	9	14824780	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45136	14824780	126388651	2347	58941											
FREM1	158326	broad.mit.edu	37	chr9	14859570	14859570	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctggaagactaaagattggCcttcaccaaatttgtgccac	9	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14859570	G	G	14859570	1	3	54	0	1	0	0	0	0	0	0	0	6104	754	26	4		4	FREM1	9	14859570	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	34790	14859570	126353861	2348	58942											
TTC39B	158219	broad.mit.edu	37	chr9	15279463	15279463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagctcacaagcttagaaCcactctatctgggttcaaat	7	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15279463	A	A	15279463	1	1	54	0	1	0	0	0	0	0	0	0	16834	522	18	3		3	TTC39B	9	15279463	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	419893	15279463	125933968	2349	58943											
C9orf93	203238	broad.mit.edu	37	chr9	15906573	15906573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccaatatcatactgaatGggcaaaaactggaagcattc	8	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15906573	T	T	15906573	1	4	54	0	1	0	0	0	0	0	0	0	2532	1363	47	2		2	C9orf93	9	15906573	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	627110	15906573	125306858	2350	58944											
BNC2	54796	broad.mit.edu	37	chr9	16738330	16738330	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtgtgtccaagtaactTaaagggggaaaaaaaaaacc	10	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16738330	C	C	16738330	1	2	54	0	1	0	0	0	0	0	0	0	1481	1769	61	5		5	BNC2	9	16738330	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	831757	16738330	124475101	2351	58945											
BNC2	54796	broad.mit.edu	37	chr9	16769548	16769548	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacggaaaggagagctcaGggaggccatgcagcttaaag	14	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16769548	T	T	16769548	1	4	54	0	1	0	0	0	0	0	0	0	1481	1015	35	2		2	BNC2	9	16769548	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31218	16769548	124443883	2352	58946											
SH3GL2	6456	broad.mit.edu	37	chr9	17619533	17619533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatacaaaaattagctGggcttggtggcatgcacctg	10	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17619533	T	T	17619533	1	4	54	0	1	0	0	0	0	0	0	0	14364	1363	47	2		2	SH3GL2	9	17619533	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	849985	17619533	123593898	2353	58947											
SH3GL2	6456	broad.mit.edu	37	chr9	17738076	17738076	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgatttgtttatatatAcagtcatctaaacaaaactg	5	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17738076	T	T	17738076	1	4	54	0	1	0	0	0	0	0	0	0	14364	406	14	5		5	SH3GL2	9	17738076	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	118543	17738076	123475355	2354	58948											
SH3GL2	6456	broad.mit.edu	37	chr9	17778907	17778907	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagtactataggaggagcAggtttgggatgatgatggaa	17	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17778907	T	T	17778907	1	4	54	0	1	0	0	0	0	0	0	0	14364	203	7	5		5	SH3GL2	9	17778907	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	40831	17778907	123434524	2355	58949											
SH3GL2	6456	broad.mit.edu	37	chr9	17779173	17779173	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttggacacatgcttggtgGcctaacccactggatagtcc	10	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17779173	C	C	17779173	1	2	54	0	1	0	0	0	0	0	0	0	14364	1218	42	4		4	SH3GL2	9	17779173	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	266	17779173	123434258	2356	58950											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18486808	18486808	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatttttgtacctttgagtGattattgttgtctgaggctg	10	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18486808	A	A	18486808	1	1	54	0	1	0	0	0	0	0	0	0	274	1305	45	4		4	ADAMTSL1	9	18486808	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	707635	18486808	122726623	2357	58951											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18528512	18528512	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggtttccagctccatccAtgtccctgcaaggggcatga	10	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18528512	C	C	18528512	1	2	54	0	1	0	0	0	0	0	0	0	274	232	8	5		5	ADAMTSL1	9	18528512	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	41704	18528512	122684919	2358	58952											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18680585	18680585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcatcatcatggccccaCcgggtaccctgagcagctcc	8	18	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18680585	A	A	18680585	1	1	54	0	1	0	0	0	0	0	0	0	274	522	18	3		3	ADAMTSL1	9	18680585	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	152073	18680585	122532846	2359	58953											
FAM154A	158297	broad.mit.edu	37	chr9	18928115	18928115	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctacagaaagatggctgcTctgctgagagcctgcctggg	13	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18928115	A	A	18928115	3	1	54	1	0	0	0	0	1	0	0	0	5509	1551	54	5	68	5	FAM154A	9	18928115	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	247530	18928115	122285316	2360	58954											
SLC24A2	25769	broad.mit.edu	37	chr9	19561697	19561697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggcctcccaaagtgctgGgattacaggcgtgagccact	12	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19561697	T	T	19561697	1	4	54	0	1	0	0	0	0	0	0	0	14580	1247	43	2		2	SLC24A2	9	19561697	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	633582	19561697	121651734	2361	58955											
SLC24A2	25769	broad.mit.edu	37	chr9	19666876	19666876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacattttatcttttctaaaGcacagtgttcccaccatgac	5	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19666876	T	T	19666876	1	4	54	0	1	0	0	0	0	0	0	0	14580	986	34	3		3	SLC24A2	9	19666876	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	105179	19666876	121546555	2362	58956											
SLC24A2	25769	broad.mit.edu	37	chr9	19705077	19705077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagttgtccccatttgGgtgatccctttgttctcagc	10	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19705077	T	T	19705077	1	4	54	0	1	0	0	0	0	0	0	0	14580	1247	43	2		2	SLC24A2	9	19705077	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	38201	19705077	121508354	2363	58957											
IFNA17	3451	broad.mit.edu	37	chr9	21227742	21227742	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattctttggaagtatttcCtcacagccaggatggagtcc	10	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21227742	T	T	21227742	3	4	54	1	0	0	0	0	1	0	0	0	7606	681	24	4	142	4	IFNA17	9	21227742	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1522665	21227742	119985689	2364	58958											
CDKN2A	1029	broad.mit.edu	37	chr9	21968296	21968296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggtcaaagatgtgtgGcacatcccgccctcctctct	9	15	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21968296	T	T	21968296	1	4	54	0	1	0	0	0	0	0	0	0	3191	1218	42	3		3	CDKN2A	9	21968296	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	740554	21968296	119245135	2365	58959											
ELAVL2	1993	broad.mit.edu	37	chr9	23736728	23736728	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcactgctacactatcctaAtaggacaacccttgcttaga	5	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23736728	T	T	23736728	1	4	54	0	1	0	0	0	0	0	0	0	5092	116	4	5		5	ELAVL2	9	23736728	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1768432	23736728	117476703	2366	58960											
ELAVL2	1993	broad.mit.edu	37	chr9	23776072	23776072	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatccatgtggttttatgttCcctgccaagtgggaaaaatt	9	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23776072	A	A	23776072	1	1	54	0	1	0	0	0	0	0	0	0	5092	870	30	3		3	ELAVL2	9	23776072	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	39344	23776072	117437359	2367	58961											
TEK	7010	broad.mit.edu	37	chr9	27124279	27124279	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctcattcaaggttcagctGatctatgcttgacacagctg	10	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27124279	A	A	27124279	1	1	54	0	1	0	0	0	0	0	0	0	15873	1305	45	4		4	TEK	9	27124279	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3348207	27124279	114089152	2368	58962											
LINGO2	158038	broad.mit.edu	37	chr9	27949430	27949430	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagatgctgcaacttcttttCacggattttgggttttttgc	9	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27949430	A	A	27949430	4	1	54	1	0	0	0	0	0	1	0	0	8888	835	29	3	584	3	LINGO2	9	27949430	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	825151	27949430	113264001	2369	58963											
LINGO2	158038	broad.mit.edu	37	chr9	28291998	28291998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccaaggcagaagacaatGgaaaaccatctttaaagtgc	8	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28291998	T	T	28291998	1	4	54	0	1	0	0	0	0	0	0	0	8888	1363	47	2		2	LINGO2	9	28291998	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	342568	28291998	112921433	2370	58964											
TAF1L	138474	broad.mit.edu	37	chr9	32634595	32634595	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaccatcatcgtgatttcaTcatcagcgagacactgctct	7	12	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32634595	A	A	32634595	3	1	54	1	0	0	0	0	1	0	0	0	15642	1435	50	5	4501	5	TAF1L	9	32634595	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	4342597	32634595	108578836	2371	58965											
DNAJA1	3301	broad.mit.edu	37	chr9	33036539	33036539	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catctactgattcgtgatttGaaaaatataaatatgtgtca	6	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33036539	C	C	33036539	1	2	54	0	1	0	0	0	0	0	0	0	4651	1305	45	4		4	DNAJA1	9	33036539	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	401944	33036539	108176892	2372	58966											
KIF24	347240	broad.mit.edu	37	chr9	34255866	34255866	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtgacattttcactgtTgcagggcaacttgatggggt	12	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34255866	A	A	34255866	3	1	54	1	0	0	0	0	1	0	0	0	8362	1812	63	5	379	5	KIF24	9	34255866	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1219327	34255866	106957565	2373	58967											
C9orf25	203259	broad.mit.edu	37	chr9	34415003	34415003	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcatccaagctggagtGcagtggtgctgtcacagctc	12	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34415003	A	A	34415003	1	1	54	0	1	0	0	0	0	0	0	0	2502	1334	46	4		4	C9orf25	9	34415003	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	159137	34415003	106798428	2374	58968											
ARID3C	138715	broad.mit.edu	37	chr9	34622007	34622007	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtgtagacagcctgcaGtacccataccagtgtagacc	10	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34622007	T	T	34622007	1	4	54	0	1	0	0	0	0	0	0	0	920	1044	36	3		3	ARID3C	9	34622007	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	207004	34622007	106591424	2375	58969											
KIAA1045	23349	broad.mit.edu	37	chr9	34961296	34961296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcattatccactccacccCtcaatcttaatgaccaaatt	1	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961296	T	T	34961296	1	4	54	0	1	0	0	0	0	0	0	0	8277	696	24	4		4	KIAA1045	9	34961296	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	339289	34961296	106252135	2376	58970											
PIGO	84720	broad.mit.edu	37	chr9	35093778	35093778	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcaagatggatggagcctCtagcttcagcagaaggccta	11	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35093778	G	G	35093778	1	3	54	0	1	0	0	0	0	0	0	0	11989	928	32	4		4	PIGO	9	35093778	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	132482	35093778	106119653	2377	58971											
UNC13B	10497	broad.mit.edu	37	chr9	35382331	35382331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctgaagagtctttgagGctgcgggtgctgtgtttttc	14	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35382331	T	T	35382331	1	4	54	0	1	0	0	0	0	0	0	0	17111	1218	42	3		3	UNC13B	9	35382331	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	288553	35382331	105831100	2378	58972											
UNC13B	10497	broad.mit.edu	37	chr9	35390050	35390051	+	Intron	DEL	TG	-	-													acctctttctttcctgtctcTgtatgtttgcagtgccacct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35390051	-	-	35390050	6	5	54	0	1	1	0	1	0	0	0	0	17111	1595	55	0		0	UNC13B	9	35390050	Intron	DEL	TG	TCGA-17-Z022-01A-01W-0746-08	7719	35390050	105823381	2379	58973											
TLN1	7094	broad.mit.edu	37	chr9	35698594	35698594	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcaaactgagagagaccTagtggtattgcacacttaca	8	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35698594	A	A	35698594	1	1	54	0	1	0	0	0	0	0	0	0	16070	1537	53	5		5	TLN1	9	35698594	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	308544	35698594	105514837	2380	58974											
NPR2	4882	broad.mit.edu	37	chr9	35802274	35802274	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggcaggttctgtttgaactCaaacatgtatgtaacagagg	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35802274	G	G	35802274	2	3	54	1	0	0	0	0	0	0	0	1	10690	813	29	4		4	NPR2	9	35802274	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	103680	35802274	105411157	2381	58975											
RECK	8434	broad.mit.edu	37	chr9	36105139	36105139	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgttttggttttttcaGggccaagtactttaggtaac	9	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36105139	T	T	36105139	5	4	54	1	0	0	0	0	0	0	1	0	13308	1014	35	2	1485	2	RECK	9	36105139	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	302865	36105139	105108292	2382	58976											
GLIPR2	152007	broad.mit.edu	37	chr9	36147842	36147842	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgagtaccggcagaagcacGgcgtccccccactgaagctc	11	15	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36147842	C	C	36147842	3	2	54	1	0	0	0	0	1	0	0	0	6508	1116	39	4	79	4	GLIPR2	9	36147842	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	42703	36147842	105065589	2383	58977											
MELK	9833	broad.mit.edu	37	chr9	36597178	36597178	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggtgggatgtgatataagGaagtcagtatacagttatca	13	3	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36597178	A	A	36597178	1	1	54	0	1	0	0	0	0	0	0	0	9563	1189	41	4		4	MELK	9	36597178	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	449336	36597178	104616253	2384	58978											
FBXO10	26267	broad.mit.edu	37	chr9	37515624	37515624	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggattttactaaggctcgaaGatgtgaagtaagttgcccaa	11	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37515624	A	A	37515624	1	1	54	0	1	0	0	0	0	0	0	0	5783	957	33	4		4	FBXO10	9	37515624	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	918446	37515624	103697807	2385	58979											
FRMPD1	22844	broad.mit.edu	37	chr9	37673501	37673501	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggatctaccattctggggTctggaggatgttggccctct	14	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37673501	A	A	37673501	1	1	54	0	1	0	0	0	0	0	0	0	6117	1682	58	5		5	FRMPD1	9	37673501	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	157877	37673501	103539930	2386	58980											
CNTNAP3	79937	broad.mit.edu	37	chr9	39154049	39154049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtagagtcagcagggcaaCattaaatagaaaaaaaaaaa	10	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39154049	A	A	39154049	1	1	54	0	1	0	0	0	0	0	0	0	3680	493	17	3		3	CNTNAP3	9	39154049	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1480548	39154049	102059382	2387	58981											
ZNF658	26149	broad.mit.edu	37	chr9	40772467	40772467	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catacattacattcgtagggTttctcccccgtatgaactct	6	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40772467	A	A	40772467	3	1	54	1	0	0	0	0	1	0	0	0	18196	1722	60	5	375	5	ZNF658	9	40772467	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1618418	40772467	100440964	2388	58982											
FAM75A6	389730	broad.mit.edu	37	chr9	43628916	43628916	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaccccccacccccacagtCctcacaactgccctgtgggg	9	20	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43628916	A	A	43628916	1	1	54	0	1	0	0	0	0	0	0	0	5674	870	30	3		3	FAM75A6	9	43628916	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2856449	43628916	97584515	2389	58983											
FOXD4L3	286380	broad.mit.edu	37	chr9	70918901	70918901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggggctgcgcagaatttGtccccgaccgcgtggagcta	14	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70918901	T	T	70918901	3	4	54	1	0	0	0	0	1	0	0	0	6060	1377	48	3	1036	3	FOXD4L3	9	70918901	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27289985	70918901	70294530	2390	58984											
PGM5	5239	broad.mit.edu	37	chr9	71080084	71080084	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcaaatctgatggactcAggacgttgcaatctgtgtgg	11	8	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71080084	T	T	71080084	2	4	54	1	0	0	0	0	0	0	0	1	11896	175	7	5		5	PGM5	9	71080084	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	161183	71080084	70133347	2391	58985											
C9orf71	169693	broad.mit.edu	37	chr9	71152154	71152154	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagtggtggcatcatgagTgctggagagctttctctgcc	13	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71152154	G	G	71152154	1	3	54	0	1	0	0	0	0	0	0	0	2520	1711	59	5		5	C9orf71	9	71152154	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	72070	71152154	70061277	2392	58986											
FXN	2395	broad.mit.edu	37	chr9	71661388	71661388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaatctggaactttgGgccacccagggtaagataaa	12	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71661388	T	T	71661388	3	4	54	1	0	0	0	0	1	0	0	0	6174	1232	43	2	259	2	FXN	9	71661388	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	509234	71661388	69552043	2393	58987											
TJP2	9414	broad.mit.edu	37	chr9	71850790	71850790	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgtgaagctggttatttgtCcttgttcctgttggagctgt	12	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71850790	A	A	71850790	1	1	54	0	1	0	0	0	0	0	0	0	16053	870	30	3		3	TJP2	9	71850790	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	189402	71850790	69362641	2394	58988											
C9orf135	138255	broad.mit.edu	37	chr9	72518665	72518665	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgcattttttttgagaCagggtcttgctctgttgccc	9	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72518665	G	G	72518665	1	3	54	0	1	0	0	0	0	0	0	0	2484	493	17	4		4	C9orf135	9	72518665	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	667875	72518665	68694766	2395	58989											
TRPM3	80036	broad.mit.edu	37	chr9	73398835	73398835	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagaatttcccacttcacaGgacatttagaatatgtttct	5	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73398835	A	A	73398835	1	1	54	0	1	0	0	0	0	0	0	0	16712	1015	35	4		4	TRPM3	9	73398835	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	880170	73398835	67814596	2396	58990											
TRPM3	80036	broad.mit.edu	37	chr9	73528289	73528289	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcagtgcagtgtagtgacCtctttttcattgcattggcc	9	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73528289	G	G	73528289	1	3	54	0	1	0	0	0	0	0	0	0	16712	696	24	4		4	TRPM3	9	73528289	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	129454	73528289	67685142	2397	58991											
TRPM3	80036	broad.mit.edu	37	chr9	74036788	74036788	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgggaccagtgtcaaatgTgtggtttgtcgttgaccaca	12	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74036788	A	A	74036788	1	1	54	0	1	0	0	0	0	0	0	0	16712	1711	59	5		5	TRPM3	9	74036788	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	508499	74036788	67176643	2398	58992											
TMC1	117531	broad.mit.edu	37	chr9	75369754	75369754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaaaaccgttcccagagCcgaagaggcatcggcagcaa	12	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75369754	A	A	75369754	3	1	54	1	0	0	0	0	1	0	0	0	16107	739	26	3	725	3	TMC1	9	75369754	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1332966	75369754	65843677	2399	58993											
TMC1	117531	broad.mit.edu	37	chr9	75382853	75382853	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcatgccactgggtaaaAgatgaggagcgttctccttc	13	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75382853	G	G	75382853	1	3	54	0	1	0	0	0	0	0	0	0	16107	87	3	5		5	TMC1	9	75382853	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	13099	75382853	65830578	2400	58994											
TRPM6	140803	broad.mit.edu	37	chr9	77377034	77377034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgtgtttggctgaagcCatggtcccacctctgagcat	12	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377034	A	A	77377034	3	1	54	1	0	0	0	0	1	0	0	0	16715	595	21	2	1571	2	TRPM6	9	77377034	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1994181	77377034	63836397	2401	58995											
TRPM6	140803	broad.mit.edu	37	chr9	77397219	77397219	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagtacatgtgaatctaCtcaacatatctgcccacatt	4	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77397219	G	G	77397219	1	3	54	0	1	0	0	0	0	0	0	0	16715	580	20	4		4	TRPM6	9	77397219	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	20185	77397219	63816212	2402	58996											
OSTF1	26578	broad.mit.edu	37	chr9	77746655	77746655	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttgtgtggcaattccacAttgggttaacactttttatt	7	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77746655	G	G	77746655	1	3	54	0	1	0	0	0	0	0	0	0	11391	232	8	5		5	OSTF1	9	77746655	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	349436	77746655	63466776	2403	58997											
TLE4	7091	broad.mit.edu	37	chr9	82212245	82212245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttttatatctaccttttGgtgttgggtcattttttagg	8	5	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82212245	T	T	82212245	1	4	54	0	1	0	0	0	0	0	0	0	16064	1363	47	2		2	TLE4	9	82212245	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4465590	82212245	59001186	2404	58998											
FLJ46321	389763	broad.mit.edu	37	chr9	84609843	84609843	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgttggccagaattatccTacaaggattagacagatcat	8	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84609843	G	G	84609843	2	3	54	1	0	0	0	0	0	0	0	1	5990	1509	53	5		5	FLJ46321	9	84609843	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2397598	84609843	56603588	2405	58999											
RASEF	158158	broad.mit.edu	37	chr9	85605391	85605391	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccccatacgtctgtaaaaAagaaatacacacaattaaat	4	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85605391	T	T	85605391	1	4	54	0	1	0	0	0	0	0	0	0	13176	29	1	5		5	RASEF	9	85605391	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	995548	85605391	55608040	2406	59000											
KIF27	55582	broad.mit.edu	37	chr9	86495428	86495428	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgagatcatatggaataTttcaaaatgaaaaactgaat	6	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86495428	C	C	86495428	1	2	54	0	1	0	0	0	0	0	0	0	8366	1508	52	5		5	KIF27	9	86495428	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	890037	86495428	54718003	2407	59001											
KIF27	55582	broad.mit.edu	37	chr9	86518256	86518256	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcaagagaatgaatccTatttgtatcaggactccctt	6	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86518256	A	A	86518256	3	1	54	1	0	0	0	0	1	0	0	0	8366	1521	53	5	3088	5	KIF27	9	86518256	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	22828	86518256	54695175	2408	59002											
NTRK2	4915	broad.mit.edu	37	chr9	87446583	87446583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttactcgaggtgacggagCtaataaatgtcacagcaaga	10	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87446583	A	A	87446583	1	1	54	0	1	0	0	0	0	0	0	0	10802	812	28	3		3	NTRK2	9	87446583	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	928327	87446583	53766848	2409	59003											
SHC3	53358	broad.mit.edu	37	chr9	91654538	91654538	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaccatcagcatcaccGccatcgtcgccatcgtcatc	5	20	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91654538	A	A	91654538	1	1	54	0	1	0	0	0	0	0	0	0	14385	1102	38	4		4	SHC3	9	91654538	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4207955	91654538	49558893	2410	59004											
ROR2	4920	broad.mit.edu	37	chr9	94426305	94426305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtcccaaaggtttcagcaGgtcccagagtcatcctccac	8	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94426305	T	T	94426305	1	4	54	0	1	0	0	0	0	0	0	0	13638	1015	35	2		2	ROR2	9	94426305	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2771767	94426305	46787126	2411	59005											
IARS	3376	broad.mit.edu	37	chr9	94973092	94973092	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acattgataagtacatgctaGaagtctgctgttgttggtaa	10	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94973092	A	A	94973092	2	1	54	1	0	0	0	0	0	0	0	1	7543	933	33	4		4	IARS	9	94973092	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	546787	94973092	46240339	2412	59006											
CENPP	401541	broad.mit.edu	37	chr9	95099682	95099682	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatttggtttacgttcttcCagagtttttcaatgtaattg	7	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95099682	G	G	95099682	1	3	54	0	1	0	0	0	0	0	0	0	3270	609	21	4		4	CENPP	9	95099682	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	126590	95099682	46113749	2413	59007											
ECM2	1842	broad.mit.edu	37	chr9	95262814	95262814	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatgtgcaaaagtaggaaAagcttataatgaatcctcac	7	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95262814	T	T	95262814	1	4	54	0	1	0	0	0	0	0	0	0	4938	29	1	5		5	ECM2	9	95262814	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	163132	95262814	45950617	2414	59008											
FAM120A	23196	broad.mit.edu	37	chr9	96323466	96323466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccattgggctgggagcaGgcggggccgtgggggccggg	24	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96323466	T	T	96323466	3	4	54	1	0	0	0	0	1	0	0	0	5461	1000	35	2	2944	2	FAM120A	9	96323466	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1060652	96323466	44889965	2415	59009											
C9orf102	375748	broad.mit.edu	37	chr9	98734494	98734494	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctctgatgatgaaagttctGatgagcagcccacatgcctt	9	11	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98734494	C	C	98734494	3	2	54	1	0	0	0	0	1	0	0	0	2471	1305	45	4		4	C9orf102	9	98734494	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2411028	98734494	42478937	2416	59010											
GABBR2	9568	broad.mit.edu	37	chr9	101134183	101134183	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccaccaaaaggtgatggtCcagccctctggccttcactt	8	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101134183	A	A	101134183	1	1	54	0	1	0	0	0	0	0	0	0	6216	870	30	3		3	GABBR2	9	101134183	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2399689	101134183	40079248	2417	59011											
GALNT12	79695	broad.mit.edu	37	chr9	101602509	101602509	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagaaaggccacgtcatgggGagcactggcttcctccactc	11	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101602509	C	C	101602509	1	2	54	0	1	0	0	0	0	0	0	0	6272	1189	41	4		4	GALNT12	9	101602509	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	468326	101602509	39610922	2418	59012											
COL15A1	1306	broad.mit.edu	37	chr9	101728635	101728635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgctgcacccccatggaGgagatggggggccttctcca	13	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101728635	T	T	101728635	1	4	54	0	1	0	0	0	0	0	0	0	3704	1015	35	2		2	COL15A1	9	101728635	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	126126	101728635	39484796	2419	59013											
TGFBR1	7046	broad.mit.edu	37	chr9	101900582	101900582	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatagcattcctaaaatctCttaatgttttataaaatata	3	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101900582	G	G	101900582	1	3	54	0	1	0	0	0	0	0	0	0	15944	928	32	4		4	TGFBR1	9	101900582	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	171947	101900582	39312849	2420	59014											
TEX10	54881	broad.mit.edu	37	chr9	103065897	103065897	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaatactgcaaagcctccGgtaccatgcttcttaccgtg	8	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103065897	A	A	103065897	1	1	54	0	1	0	0	0	0	0	0	0	15894	1131	39	4		4	TEX10	9	103065897	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1165315	103065897	38147534	2421	59015											
LPPR1	54886	broad.mit.edu	37	chr9	104048198	104048198	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgaaactctatctgaaatGatcaattatcactttctcta	4	9	5	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104048198	T	T	104048198	1	4	54	0	1	0	0	0	0	0	0	0	9011	1305	45	3		3	LPPR1	9	104048198	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	982301	104048198	37165233	2422	59016											
GRIN3A	116443	broad.mit.edu	37	chr9	104385544	104385544	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcatttgtgactttctagGttggcaaactgagcacatcc	10	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104385544	T	T	104385544	1	4	54	0	1	0	0	0	0	0	0	0	6849	1276	44	3		3	GRIN3A	9	104385544	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	337346	104385544	36827887	2423	59017											
GRIN3A	116443	broad.mit.edu	37	chr9	104498106	104498106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccatctgctgcctacaCcattcagattcaggtgacag	7	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104498106	A	A	104498106	1	1	54	0	1	0	0	0	0	0	0	0	6849	522	18	3		3	GRIN3A	9	104498106	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112562	104498106	36715325	2424	59018											
OR13C9	286362	broad.mit.edu	37	chr9	107380116	107380116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagggttgcagatagccaCatagcggtcaaaggccatca	12	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107380116	A	A	107380116	3	1	54	1	0	0	0	0	1	0	0	0	11033	478	17	3	589	3	OR13C9	9	107380116	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2882010	107380116	33833315	2425	59019											
NIPSNAP3B	55335	broad.mit.edu	37	chr9	107533128	107533128	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attatttttctccctattctAggagtctatgaactagctgt	6	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107533128	T	T	107533128	5	4	54	1	0	0	0	0	0	0	1	0	10526	434	15	5	443	5	NIPSNAP3B	9	107533128	Splice_Site	SNP	A	TCGA-17-Z022-01A-01W-0746-08	153012	107533128	33680303	2426	59020											
ABCA1	19	broad.mit.edu	37	chr9	107599711	107599711	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggctgggggcagcttacctCagccatgacctgccttgtgg	15	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107599711	T	T	107599711	3	4	54	1	0	0	0	0	1	0	0	0	28	835	29	4	5757	4	ABCA1	9	107599711	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	66583	107599711	33613720	2427	59021											
ABCA1	19	broad.mit.edu	37	chr9	107607837	107607837	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctcgggaagggagatgtaGagtttagtgttctctgtaat	14	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107607837	A	A	107607837	3	1	54	1	0	0	0	0	1	0	0	0	28	942	33	4	6223	4	ABCA1	9	107607837	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8126	107607837	33605594	2428	59022											
ABCA1	19	broad.mit.edu	37	chr9	107643834	107643834	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaattacatgttttatctCattaacaggtaagaagaagt	7	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107643834	G	G	107643834	1	3	54	0	1	0	0	0	0	0	0	0	28	841	29	4		4	ABCA1	9	107643834	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	35997	107643834	33569597	2429	59023											
FKTN	2218	broad.mit.edu	37	chr9	108317569	108317569	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcccagaccctacaaatGttaggagtcggccaggatcc	11	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108317569	T	T	108317569	1	4	54	0	1	0	0	0	0	0	0	0	5976	1392	48	3		3	FKTN	9	108317569	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	673735	108317569	32895862	2430	59024											
C9orf5	23731	broad.mit.edu	37	chr9	111820048	111820048	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaaaaaagaaaaaagaaatCagctacgaactccatttaaa	4	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111820048	A	A	111820048	1	1	54	0	1	0	0	0	0	0	0	0	2512	841	29	3		3	C9orf5	9	111820048	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3502479	111820048	29393383	2431	59025											
C9orf5	23731	broad.mit.edu	37	chr9	111856649	111856649	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttggattcccctgcagccGaggtctcacatgtgacacag	10	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111856649	A	A	111856649	1	1	54	0	1	0	0	0	0	0	0	0	2512	1073	37	4		4	C9orf5	9	111856649	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	36601	111856649	29356782	2432	59026											
MUSK	4593	broad.mit.edu	37	chr9	113562632	113562632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgctctttgaatacatGgcctatggtgacctcaatga	9	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113562632	T	T	113562632	3	4	54	1	0	0	0	0	1	0	0	0	10083	1348	47	2	2064	2	MUSK	9	113562632	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1705983	113562632	27650799	2433	59027											
C9orf84	158401	broad.mit.edu	37	chr9	114518680	114518680	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttaataactccttcagttCtgagagtgatggaatatcaa	8	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114518680	A	A	114518680	4	1	54	1	0	0	0	0	0	1	0	0	2526	922	32	3	3823	3	C9orf84	9	114518680	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	956048	114518680	26694751	2434	59028											
BSPRY	54836	broad.mit.edu	37	chr9	116131770	116131770	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccgttttgcagacaaggctCagagagagtaaatggcttat	11	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116131770	T	T	116131770	1	4	54	0	1	0	0	0	0	0	0	0	1541	841	29	4		4	BSPRY	9	116131770	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1613090	116131770	25081661	2435	59029											
AMBP	259	broad.mit.edu	37	chr9	116835314	116835314	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcggcgcccgccctgcaagGaggaagcagaggagacgcct	16	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116835314	T	T	116835314	1	4	54	0	1	0	0	0	0	0	0	0	564	1189	41	3		3	AMBP	9	116835314	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	703544	116835314	24378117	2436	59030											
TNC	3371	broad.mit.edu	37	chr9	117792633	117792633	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaggccagaggtcgtgtctCcattcagcattgcttgggag	14	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117792633	T	T	117792633	3	4	54	1	0	0	0	0	1	0	0	0	16393	855	30	4	653	4	TNC	9	117792633	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	957319	117792633	23420798	2437	59031											
TNC	3371	broad.mit.edu	37	chr9	117838357	117838357	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctctccttgtcttccttCacagcagaaactccaatccc	4	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117838357	T	T	117838357	2	4	54	1	0	0	0	0	0	0	0	1	16393	813	29	4		4	TNC	9	117838357	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45724	117838357	23375074	2438	59032											
DEC1	50514	broad.mit.edu	37	chr9	117925006	117925006	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagaagattcatttatttgtCcttaggaaaatagcagttcc	7	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117925006	T	T	117925006	1	4	54	0	1	0	0	0	0	0	0	0	4414	870	30	4		4	DEC1	9	117925006	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	86649	117925006	23288425	2439	59033											
DEC1	50514	broad.mit.edu	37	chr9	118095609	118095609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaggacttgcccagtgaCcaggagagtaggggccactg	14	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118095609	A	A	118095609	1	1	54	0	1	0	0	0	0	0	0	0	4414	522	18	3		3	DEC1	9	118095609	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	170603	118095609	23117822	2440	59034											
PAPPA	5069	broad.mit.edu	37	chr9	118979210	118979210	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtatttttggtggagacAgggtttcaccatgttggtca	12	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118979210	G	G	118979210	1	3	54	0	1	0	0	0	0	0	0	0	11526	203	7	5		5	PAPPA	9	118979210	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	883601	118979210	22234221	2441	59035											
PAPPA	5069	broad.mit.edu	37	chr9	118998047	118998047	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctatggattgtaacccatCattgggtgtagatttgtctt	9	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118998047	A	A	118998047	1	1	54	0	1	0	0	0	0	0	0	0	11526	841	29	3		3	PAPPA	9	118998047	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18837	118998047	22215384	2442	59036											
PAPPA	5069	broad.mit.edu	37	chr9	119065222	119065222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatcggacagccagcagCatcccaggtaagatcctaac	8	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119065222	A	A	119065222	3	1	54	1	0	0	0	0	1	0	0	0	11526	710	25	3	3178	3	PAPPA	9	119065222	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	67175	119065222	22148209	2443	59037											
PAPPA	5069	broad.mit.edu	37	chr9	119094059	119094059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctggctaaggattgtGgatattactgcattttggct	10	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119094059	T	T	119094059	1	4	54	0	1	0	0	0	0	0	0	0	11526	1363	47	2		2	PAPPA	9	119094059	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28837	119094059	22119372	2444	59038											
ASTN2	23245	broad.mit.edu	37	chr9	119488438	119488438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggggtacatcagacacGgtgaccaagagggaatctgc	14	9	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119488438	T	T	119488438	1	4	54	0	1	0	0	0	0	0	0	0	1069	1131	39	1		1	ASTN2	9	119488438	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	394379	119488438	21724993	2445	59039											
ASTN2	23245	broad.mit.edu	37	chr9	119649991	119649991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctcactctgccacccaGggtggagtgcaatggcatga	14	11	2	1	rs140146418		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119649991	T	T	119649991	1	4	54	0	1	0	0	0	0	0	0	0	1069	1015	35	2		2	ASTN2	9	119649991	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	161553	119649991	21563440	2446	59040											
ASTN2	23245	broad.mit.edu	37	chr9	119865780	119865780	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtatggagcaagatgataCaaggtctttcctgggcctat	11	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119865780	G	G	119865780	1	3	54	0	1	0	0	0	0	0	0	0	1069	493	17	4		4	ASTN2	9	119865780	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	215789	119865780	21347651	2447	59041											
ASTN2	23245	broad.mit.edu	37	chr9	120062940	120062940	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcataattctaagagatcctGatgtcaggccaggttaaatg	9	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120062940	C	C	120062940	1	2	54	0	1	0	0	0	0	0	0	0	1069	1305	45	4		4	ASTN2	9	120062940	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	197160	120062940	21150491	2448	59042											
ASTN2	23245	broad.mit.edu	37	chr9	120170371	120170371	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agattggagccaatcagttgGatactcaggcaggaaaacca	11	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120170371	C	C	120170371	1	2	54	0	1	0	0	0	0	0	0	0	1069	1189	41	4		4	ASTN2	9	120170371	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	107431	120170371	21043060	2449	59043											
ASTN2	23245	broad.mit.edu	37	chr9	120176546	120176546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaggggcaggttcccaCtgcgggagggttggcacgcc	19	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120176546	A	A	120176546	1	1	54	0	1	0	0	0	0	0	0	0	1069	580	20	3		3	ASTN2	9	120176546	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6175	120176546	21036885	2450	59044											
DBC1	1620	broad.mit.edu	37	chr9	121970988	121970989	+	Intron	INS	-	C	C													cagaggtggaggtggtggcaINSacacttacctctctctaggc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121970989	C	C	121970988	6	5	54	0	1	1	1	0	0	0	0	0	4280	145	5	0		0	DBC1	9	121970988	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	1794442	121970988	19242443	2451	59045											
DBC1	1620	broad.mit.edu	37	chr9	122075593	122075593	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgagatacggccccatAtaaacaggaagtagaggagc	12	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122075593	G	G	122075593	3	3	54	1	0	0	0	0	1	0	0	0	4280	449	16	5	2272	5	DBC1	9	122075593	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	104605	122075593	19137838	2452	59046											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123215791	123215791	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacccaggcaccccgtgCaggttctctggccgatgctc	11	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123215791	A	A	123215791	2	1	54	1	0	0	0	0	0	0	0	1	3176	697	25	3		3	CDK5RAP2	9	123215791	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1140198	123215791	17997640	2453	59047											
CEP110	11064	broad.mit.edu	37	chr9	123924434	123924434	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggataaacgagaaatagaaCgaatgactgctgagtcccga	12	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123924434	A	A	123924434	2	1	54	1	0	0	0	0	0	0	0	1	3275	528	19	3		3	CEP110	9	123924434	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	708643	123924434	17288997	2454	59048											
NDUFA8	4702	broad.mit.edu	37	chr9	124910683	124910683	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggtatgtgagtacatattCttatctcacttacaagacaa	6	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124910683	G	G	124910683	1	3	54	0	1	0	0	0	0	0	0	0	10366	928	32	4		4	NDUFA8	9	124910683	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	986249	124910683	16302748	2455	59049											
OR1L1	26737	broad.mit.edu	37	chr9	125424391	125424391	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgtaatcccttccactacAtcaccattatgagtcacaga	4	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125424391	G	G	125424391	3	3	54	1	0	0	0	0	1	0	0	0	11057	217	8	5	399	5	OR1L1	9	125424391	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	513708	125424391	15789040	2456	59050											
DENND1A	57706	broad.mit.edu	37	chr9	126304755	126304755	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaccaaatagccttattcTctgggatctggcagtgctgg	10	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126304755	A	A	126304755	1	1	54	0	1	0	0	0	0	0	0	0	4466	1566	54	5		5	DENND1A	9	126304755	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	880364	126304755	14908676	2457	59051											
DENND1A	57706	broad.mit.edu	37	chr9	126322678	126322678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaagatgggactgataCcctcctctgataagttagaa	11	7	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126322678	A	A	126322678	1	1	54	0	1	0	0	0	0	0	0	0	4466	522	18	3		3	DENND1A	9	126322678	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17923	126322678	14890753	2458	59052											
SCAI	286205	broad.mit.edu	37	chr9	127733894	127733894	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaatttaaaataagtaacCattttaagccattatagtac	3	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127733894	T	T	127733894	1	4	54	0	1	0	0	0	0	0	0	0	13981	609	21	4		4	SCAI	9	127733894	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1411216	127733894	13479537	2459	59053											
ZBTB34	403341	broad.mit.edu	37	chr9	129641787	129641787	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctgcaggggaaactatgtGacatcattgtacacattcag	10	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129641787	C	C	129641787	3	2	54	1	0	0	0	0	1	0	0	0	17663	1290	45	4	99	4	ZBTB34	9	129641787	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1907893	129641787	11571644	2460	59054											
RALGPS1	9649	broad.mit.edu	37	chr9	129819367	129819367	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatccagagctggtgagtgAcagaaccagcatgacacagc	12	10	0	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129819367	G	G	129819367	1	3	54	0	1	0	0	0	0	0	0	0	13125	290	10	5		5	RALGPS1	9	129819367	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	177580	129819367	11394064	2461	59055											
RALGPS1	9649	broad.mit.edu	37	chr9	129853180	129853180	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggactcagggccagaccAtatctctgtttcttctgatt	8	11	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129853180	G	G	129853180	1	3	54	0	1	0	0	0	0	0	0	0	13125	232	8	5		5	RALGPS1	9	129853180	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	33813	129853180	11360251	2462	59056											
ODF2	4957	broad.mit.edu	37	chr9	131246315	131246315	+	Frame_Shift_Del	DEL	C	-	-													aaagaggctgagaacagtcgCctgtgcatgcagattaaggt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131246315	-	-	131246315	7	5	54	1	0	1	0	1	0	0	0	0	10922	726	26	0	1179	0	ODF2	9	131246315	Frame_Shift_Del	DEL	C	TCGA-17-Z022-01A-01W-0746-08	1393135	131246315	9967116	2463	59057											
PRRX2	51450	broad.mit.edu	37	chr9	132484547	132484547	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccccgcaaccccaggggtCaacatggccaacagcatcgc	11	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132484547	T	T	132484547	2	4	54	1	0	0	0	0	0	0	0	1	12719	813	29	4		4	PRRX2	9	132484547	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1238232	132484547	8728884	2464	59058											
FNBP1	23048	broad.mit.edu	37	chr9	132662795	132662795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcctgctcgctgcgtgctGggagccggccttcaacctca	13	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132662795	T	T	132662795	3	4	54	1	0	0	0	0	1	0	0	0	6023	1348	47	2	409	2	FNBP1	9	132662795	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	178248	132662795	8550636	2465	59059											
FAM78A	286336	broad.mit.edu	37	chr9	134136572	134136572	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggcccatgtgacgctgggGtaaaagttgtcattcatgct	12	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134136572	A	A	134136572	2	1	54	1	0	0	0	0	0	0	0	1	5679	1256	44	4		4	FAM78A	9	134136572	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1473777	134136572	7076859	2466	59060											
PPAPDC3	84814	broad.mit.edu	37	chr9	134183499	134183499	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggtgctggcggtgccccTgcgtgtgctgctggtgctct	16	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134183499	A	A	134183499	3	1	54	1	0	0	0	0	1	0	0	0	12392	1580	55	5	647	5	PPAPDC3	9	134183499	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	46927	134183499	7029932	2467	59061											
BAT2L1	84726	broad.mit.edu	37	chr9	134319564	134319564	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccatgtctaccccgtcttCttgacaggtttaaggggctc	9	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134319564	T	T	134319564	1	4	54	0	1	0	0	0	0	0	0	0	1325	928	32	4		4	BAT2L1	9	134319564	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	136065	134319564	6893867	2468	59062											
SETX	23064	broad.mit.edu	37	chr9	135139986	135139986	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggggctcgagggttgTggatcccaaaggaatattcc	15	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135139986	A	A	135139986	2	1	54	1	0	0	0	0	0	0	0	1	14254	1683	59	5		5	SETX	9	135139986	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	820422	135139986	6073445	2469	59063											
SETX	23064	broad.mit.edu	37	chr9	135175952	135175952	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacacttgatatacacaattGagaagtagattattagatga	7	4	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135175952	A	A	135175952	1	1	54	0	1	0	0	0	0	0	0	0	14254	1305	45	4		4	SETX	9	135175952	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	35966	135175952	6037479	2470	59064											
C9orf171	389799	broad.mit.edu	37	chr9	135374725	135374725	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtgcttactcccaggctGaccactgccccgtgggtctc	12	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135374725	T	T	135374725	1	4	54	0	1	0	0	0	0	0	0	0	2496	1305	45	3		3	C9orf171	9	135374725	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	198773	135374725	5838706	2471	59065											
GTF3C5	9328	broad.mit.edu	37	chr9	135933286	135933286	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgaggaggatgaggaggaGgaggaagaggaggaggagga	24	1	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135933286	A	A	135933286	2	1	54	1	0	0	0	0	0	0	0	1	6941	991	35	4		4	GTF3C5	9	135933286	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	558561	135933286	5280145	2472	59066											
ABO	28	broad.mit.edu	37	chr9	136137918	136137918	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaatgaaccacactgaaatGagcacgtcgaggtcactgtc	11	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136137918	T	T	136137918	1	4	54	0	1	0	0	0	0	0	0	0	97	1305	45	3		3	ABO	9	136137918	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	204632	136137918	5075513	2473	59067											
FCN2	2220	broad.mit.edu	37	chr9	137776647	137776647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccccacactcctcccaCggcttgtggctgcccttggc	8	21	0	0	rs55985459		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137776647	A	A	137776647	1	1	54	0	1	0	0	0	0	0	0	0	5849	551	19	3		3	FCN2	9	137776647	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1638729	137776647	3436784	2474	59068											
WDR37	22884	broad.mit.edu	37	chr10	1147459	1147459	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccattctgaggtcctgggGtgaggacttcgacacaggaa	13	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1147459	C	C	1147459	1	2	54	0	1	0	0	0	0	0	0	0	17418	1276	44	4		4	WDR37	10	1147459	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		1147459	134387288	2475	59069											
AKR1E2	83592	broad.mit.edu	37	chr10	4873103	4873103	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctggagggctttctactttCtttatgggagttgatgactt	11	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4873103	T	T	4873103	1	4	54	0	1	0	0	0	0	0	0	0	474	928	32	4		4	AKR1E2	10	4873103	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3725644	4873103	130661644	2476	59070											
ANKRD16	54522	broad.mit.edu	37	chr10	5919902	5919902	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggactccataatgtgcctgtCatggagctgggaactcagcc	12	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5919902	G	G	5919902	1	3	54	0	1	0	0	0	0	0	0	0	645	841	29	4		4	ANKRD16	10	5919902	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1046799	5919902	129614845	2477	59071											
FBXO18	84893	broad.mit.edu	37	chr10	5936588	5936589	+	Intron	DNP	GG	TT	TT													taaagcacttaggagctctgGgagagttgagagcttcaaag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	5936589	TT	TT	5936588	1	4	54	0	1	0	0	0	0	0	0	0	5788	1247	43	2		2	FBXO18	10	5936588	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	16686	5936588	129598159	2478	59072											
PRKCQ	5588	broad.mit.edu	37	chr10	6592607	6592607	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgtgggtcgtctccacctCttggctattgagaatcctgc	10	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6592607	A	A	6592607	1	1	54	0	1	0	0	0	0	0	0	0	12621	928	32	3		3	PRKCQ	10	6592607	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	656019	6592607	128942140	2479	59073											
SFMBT2	57713	broad.mit.edu	37	chr10	7239435	7239435	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttccaatgcctattccctCcttcagaaactgagcccaca	5	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7239435	A	A	7239435	1	1	54	0	1	0	0	0	0	0	0	0	14271	870	30	3		3	SFMBT2	10	7239435	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	646828	7239435	128295312	2480	59074											
SFMBT2	57713	broad.mit.edu	37	chr10	7242325	7242325	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacctatacatgtctctgctCccggctgcacggtgggaagg	12	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7242325	G	G	7242325	1	3	54	0	1	0	0	0	0	0	0	0	14271	870	30	4		4	SFMBT2	10	7242325	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2890	7242325	128292422	2481	59075											
SFMBT2	57713	broad.mit.edu	37	chr10	7372812	7372812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagaggaacaaagacaaGgtctctcatctgacttctga	8	9	4	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7372812	T	T	7372812	1	4	54	0	1	0	0	0	0	0	0	0	14271	1015	35	2		2	SFMBT2	10	7372812	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	130487	7372812	128161935	2482	59076											
ITIH5	80760	broad.mit.edu	37	chr10	7619007	7619007	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcacagggagggagggagatCagggccctgctctgacagca	17	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7619007	G	G	7619007	1	3	54	0	1	0	0	0	0	0	0	0	7977	841	29	4		4	ITIH5	10	7619007	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	246195	7619007	127915740	2483	59077											
KIN	22944	broad.mit.edu	37	chr10	7821017	7821017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgccataaattagcataCaatcaaagcaaaacataaat	3	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7821017	A	A	7821017	1	1	54	0	1	0	0	0	0	0	0	0	8386	493	17	3		3	KIN	10	7821017	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	202010	7821017	127713730	2484	59078											
UPF2	26019	broad.mit.edu	37	chr10	12076967	12076967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattcttaaagagctgcacCcaggacgctatatttcaaat	6	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12076967	A	A	12076967	1	1	54	0	1	0	0	0	0	0	0	0	17130	638	22	2		2	UPF2	10	12076967	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4255950	12076967	123457780	2485	59079											
FRMD4A	55691	broad.mit.edu	37	chr10	13993574	13993574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgatcgacaggacaaatGttaaggtgatcaggtatcac	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13993574	T	T	13993574	1	4	54	0	1	0	0	0	0	0	0	0	6111	1392	48	3		3	FRMD4A	10	13993574	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1916607	13993574	121541173	2486	59080											
FRMD4A	55691	broad.mit.edu	37	chr10	14212024	14212024	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggatcattccaggcactattCtccatggaatcctggcaaag	9	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14212024	G	G	14212024	1	3	54	0	1	0	0	0	0	0	0	0	6111	928	32	4		4	FRMD4A	10	14212024	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	218450	14212024	121322723	2487	59081											
FRMD4A	55691	broad.mit.edu	37	chr10	14293454	14293454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccttcagatgaaactgcaGccccagtcaaatgcgtcact	8	13	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14293454	T	T	14293454	1	4	54	0	1	0	0	0	0	0	0	0	6111	986	34	3		3	FRMD4A	10	14293454	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	81430	14293454	121241293	2488	59082											
SUV39H2	79723	broad.mit.edu	37	chr10	14938888	14938888	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggaaaggatggccagattCtacaaatacttgggaacctt	10	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14938888	T	T	14938888	3	4	54	1	0	0	0	0	1	0	0	0	15531	913	32	4	43	4	SUV39H2	10	14938888	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	645434	14938888	120595859	2489	59083											
FAM171A1	221061	broad.mit.edu	37	chr10	15256254	15256254	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccacttggagtgaggttatCaaaggagatctggcttttat	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15256254	A	A	15256254	3	1	54	1	0	0	0	0	1	0	0	0	5535	826	29	3	1343	3	FAM171A1	10	15256254	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	317366	15256254	120278493	2490	59084											
PTER	9317	broad.mit.edu	37	chr10	16528292	16528293	+	Intron	DNP	GG	AT	AT													attcattcacatactgtggtGgatctattttgataaatttc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	16528293	AT	AT	16528292	1	1	54	0	1	0	0	0	0	0	0	0	12845	1363	47	4		4	PTER	10	16528292	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	1272038	16528292	119006455	2491	59085											
CUBN	8029	broad.mit.edu	37	chr10	16976653	16976653	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccacttccaaacacatggtAgaactgcattctgcaagtgg	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16976653	G	G	16976653	1	3	54	0	1	0	0	0	0	0	0	0	4084	435	15	5		5	CUBN	10	16976653	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	448361	16976653	118558094	2492	59086											
CUBN	8029	broad.mit.edu	37	chr10	16989131	16989131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatttggaaaaatacttcCtaaatttcacgtacactatg	5	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16989131	A	A	16989131	1	1	54	0	1	0	0	0	0	0	0	0	4084	696	24	2		2	CUBN	10	16989131	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	12478	16989131	118545616	2493	59087											
CUBN	8029	broad.mit.edu	37	chr10	16996135	16996135	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttggataaaacttttttAtactgtttctagtcttaaaa	4	4	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16996135	G	G	16996135	1	3	54	0	1	0	0	0	0	0	0	0	4084	464	16	5		5	CUBN	10	16996135	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7004	16996135	118538612	2494	59088											
CUBN	8029	broad.mit.edu	37	chr10	17142110	17142110	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgctgaggagttcatgaggGaggctggagccacaaaatct	14	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17142110	A	A	17142110	2	1	54	1	0	0	0	0	0	0	0	1	4084	1161	41	4		4	CUBN	10	17142110	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	145975	17142110	118392637	2495	59089											
SLC39A12	221074	broad.mit.edu	37	chr10	18282325	18282325	+	Intron	SNP	C	T	T													agataaacagatttcatactCctgatttgccggttcttaac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18282325	T	T	18282325	1	4	54	0	1	0	0	0	0	0	0	0	14729	870	30	4		4	SLC39A12	10	18282325	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1140215	18282325	117252422	2496	59090	278	2									
SLC39A12	221074	broad.mit.edu	37	chr10	18282327	18282327	+	Intron	SNP	T	G	G													ataaacagatttcatactccTgatttgccggttcttaactg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18282327	G	G	18282327	1	3	54	0	1	0	0	0	0	0	0	0	14729	1595	55	5		5	SLC39A12	10	18282327	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2	18282327	117252420	2497	59091	278	2									
CACNB2	783	broad.mit.edu	37	chr10	18822916	18822916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattaacataatggctgacCtactcacctttctgttgaag	7	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18822916	A	A	18822916	1	1	54	0	1	0	0	0	0	0	0	0	2579	696	24	2		2	CACNB2	10	18822916	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	540589	18822916	116711831	2498	59092											
NSUN6	221078	broad.mit.edu	37	chr10	18885334	18885334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagagaatataaagaacCctttgggggtaatccactac	8	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18885334	A	A	18885334	1	1	54	0	1	0	0	0	0	0	0	0	10777	638	22	2		2	NSUN6	10	18885334	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	62418	18885334	116649413	2499	59093											
MLLT10	8028	broad.mit.edu	37	chr10	22006822	22006822	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttctcctcctccttctccTcctcctcctcctcctccttc	0	25	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22006822	G	G	22006822	1	3	54	0	1	0	0	0	0	0	0	0	9719	1566	54	5		5	MLLT10	10	22006822	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3121488	22006822	113527925	2500	59094											
ARMC3	219681	broad.mit.edu	37	chr10	23270286	23270286	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctgaaaatagaaaacttTttcatgaacaagaggttgaa	8	4	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23270286	A	A	23270286	3	1	54	1	0	0	0	0	1	0	0	0	956	1841	64	5	964	5	ARMC3	10	23270286	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1263464	23270286	112264461	2501	59095											
ARMC3	219681	broad.mit.edu	37	chr10	23320720	23320720	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaagagaggcagagatatGtccccatggctctggttccc	11	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23320720	A	A	23320720	1	1	54	0	1	0	0	0	0	0	0	0	956	1392	48	4		4	ARMC3	10	23320720	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	50434	23320720	112214027	2502	59096											
KIAA1217	56243	broad.mit.edu	37	chr10	24375161	24375161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaggagcctcaacaaaGggaggcttttatctagggtc	12	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24375161	A	A	24375161	1	1	54	0	1	0	0	0	0	0	0	0	8286	1015	35	4		4	KIAA1217	10	24375161	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1054441	24375161	111159586	2503	59097											
GPR158	57512	broad.mit.edu	37	chr10	25509871	25509871	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaatatgagtaggcaatttGacaatttttggcatgttctt	9	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25509871	T	T	25509871	1	4	54	0	1	0	0	0	0	0	0	0	6728	1305	45	3		3	GPR158	10	25509871	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1134710	25509871	110024876	2504	59098											
GPR158	57512	broad.mit.edu	37	chr10	25887316	25887316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggattagctgggaaaaccCaaacagcaggtgtggaagaa	13	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887316	A	A	25887316	3	1	54	1	0	0	0	0	1	0	0	0	6728	595	21	2	2803	2	GPR158	10	25887316	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	377445	25887316	109647431	2505	59099											
GAD2	2572	broad.mit.edu	37	chr10	26513076	26513076	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaaagtagtcctgataCatcttccatgtaatcaaact	5	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26513076	A	A	26513076	1	1	54	0	1	0	0	0	0	0	0	0	6240	493	17	3		3	GAD2	10	26513076	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	625760	26513076	109021671	2506	59100											
APBB1IP	54518	broad.mit.edu	37	chr10	26759798	26759798	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtaattgcccataatcTctcaccaacctcagcctgcg	6	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26759798	A	A	26759798	1	1	54	0	1	0	0	0	0	0	0	0	762	1566	54	5		5	APBB1IP	10	26759798	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	246722	26759798	108774949	2507	59101											
ZEB1	6935	broad.mit.edu	37	chr10	31629519	31629519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacatgtgatgtttgcctAccatgttctaggcactgtgc	9	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31629519	G	G	31629519	1	3	54	0	1	0	0	0	0	0	0	0	17749	406	14	5		5	ZEB1	10	31629519	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4869721	31629519	103905228	2508	59102											
C10orf68	79741	broad.mit.edu	37	chr10	33134974	33134974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagacctttaatgacaacaGtacctgtatcatagtacttt	5	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33134974	T	T	33134974	1	4	54	0	1	0	0	0	0	0	0	0	1624	1044	36	3		3	C10orf68	10	33134974	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1505455	33134974	102399773	2509	59103											
PARD3	56288	broad.mit.edu	37	chr10	34821386	34821386	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctgggctcatcacgtgtTttctttatatttattctttt	7	7	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34821386	A	A	34821386	1	1	54	0	1	0	0	0	0	0	0	0	11537	1856	64	5		5	PARD3	10	34821386	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1686412	34821386	100713361	2510	59104											
CCNY	219771	broad.mit.edu	37	chr10	35682041	35682041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttctgagttgagctccGtctccttcccctattaggat	8	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35682041	T	T	35682041	1	4	54	0	1	0	0	0	0	0	0	0	2966	1160	40	3		3	CCNY	10	35682041	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	860655	35682041	99852706	2511	59105											
ANKRD30A	91074	broad.mit.edu	37	chr10	37414947	37414947	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaagaggtaccaggccCtgcctgagccggggctgcag	15	14	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37414947	A	A	37414947	1	1	54	0	1	0	0	0	0	0	0	0	658	696	24	2		2	ANKRD30A	10	37414947	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1732906	37414947	98119800	2512	59106											
ANKRD30A	91074	broad.mit.edu	37	chr10	37447548	37447548	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaattttactctggaaaGgagaatattaaaatatttga	6	2	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37447548	T	T	37447548	1	4	54	0	1	0	0	0	0	0	0	0	658	1015	35	2		2	ANKRD30A	10	37447548	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32601	37447548	98087199	2513	59107											
ANKRD30A	91074	broad.mit.edu	37	chr10	37506619	37506619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagataagtatgtttaatgGcagattgactttaaaccaag	8	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37506619	T	T	37506619	1	4	54	0	1	0	0	0	0	0	0	0	658	1218	42	3		3	ANKRD30A	10	37506619	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	59071	37506619	98028128	2514	59108											
ZNF248	57209	broad.mit.edu	37	chr10	38108689	38108689	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagctccattggtcctgCttttccactgtttctgctca	6	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38108689	T	T	38108689	1	4	54	0	1	0	0	0	0	0	0	0	17919	812	28	4		4	ZNF248	10	38108689	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	602070	38108689	97426058	2515	59109											
ZNF33A	7581	broad.mit.edu	37	chr10	38343873	38343873	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctccgtcaagggacaatcActatgaatttagtgattgtg	9	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38343873	T	T	38343873	3	4	54	1	0	0	0	0	1	0	0	0	17980	159	6	5	835	5	ZNF33A	10	38343873	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	235184	38343873	97190874	2516	59110											
ALOX5	240	broad.mit.edu	37	chr10	45936928	45936928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagagcccagcctggccGccttcactccctatctgaga	10	15	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45936928	T	T	45936928	1	4	54	0	1	0	0	0	0	0	0	0	540	1102	38	3		3	ALOX5	10	45936928	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7593055	45936928	89597819	2517	59111											
FRMPD2	143162	broad.mit.edu	37	chr10	49420032	49420032	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcatcctctccccacaGtgcagagctgagccggtgca	10	16	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49420032	C	C	49420032	3	2	54	1	0	0	0	0	1	0	0	0	6118	1020	36	4	2421	4	FRMPD2	10	49420032	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3483104	49420032	86114715	2518	59112											
C10orf72	196740	broad.mit.edu	37	chr10	50255349	50255349	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctacatggatgtcaggtGtgcaggtgtgaaccagatgc	14	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50255349	A	A	50255349	1	1	54	0	1	0	0	0	0	0	0	0	1626	1392	48	4		4	C10orf72	10	50255349	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	835317	50255349	85279398	2519	59113											
C10orf71	118461	broad.mit.edu	37	chr10	50531881	50531881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgctcttgacctgcctGtggaacccaatgaacattat	7	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50531881	T	T	50531881	3	4	54	1	0	0	0	0	1	0	0	0	1625	1377	48	3	1293	3	C10orf71	10	50531881	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	276532	50531881	85002866	2520	59114											
ERCC6	2074	broad.mit.edu	37	chr10	50725170	50725170	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcgaggcatcttgggactAaaacggaaaaaaggtattat	11	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50725170	C	C	50725170	1	2	54	0	1	0	0	0	0	0	0	0	5259	377	13	5		5	ERCC6	10	50725170	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	193289	50725170	84809577	2521	59115											
SLC18A3	6572	broad.mit.edu	37	chr10	50819863	50819863	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacacctgcagtggctgtaCggcgcgcttgggctggctgt	15	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50819863	A	A	50819863	4	1	54	1	0	0	0	0	0	1	0	0	14540	547	19	3	1079	3	SLC18A3	10	50819863	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	94693	50819863	84714884	2522	59116											
CHAT	1103	broad.mit.edu	37	chr10	50863506	50863506	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtcatggtgagtgacgtCgcaccacctcacaacactgc	9	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50863506	A	A	50863506	1	1	54	0	1	0	0	0	0	0	0	0	3344	899	31	3		3	CHAT	10	50863506	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43643	50863506	84671241	2523	59117											
C10orf53	282966	broad.mit.edu	37	chr10	50902609	50902609	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggtaaactagacccactGtgtgaaaaggccaggatagc	12	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50902609	A	A	50902609	2	1	54	1	0	0	0	0	0	0	0	1	1617	1364	48	4		4	C10orf53	10	50902609	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	39103	50902609	84632138	2524	59118											
OGDHL	55753	broad.mit.edu	37	chr10	50952077	50952077	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccaggggcacagagctGgccacactgccgatgtgggt	14	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50952077	T	T	50952077	2	4	54	1	0	0	0	0	0	0	0	1	10935	1335	47	2		2	OGDHL	10	50952077	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	49468	50952077	84582670	2525	59119											
PRKG1	5592	broad.mit.edu	37	chr10	53200611	53200611	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgagagagcaactaaaacaGccaagaaggcaaaaatttca	8	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53200611	C	C	53200611	1	2	54	0	1	0	0	0	0	0	0	0	12628	986	34	4		4	PRKG1	10	53200611	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2248534	53200611	82334136	2526	59120											
PRKG1	5592	broad.mit.edu	37	chr10	53723655	53723655	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgctgtattagtttcctaTtgctgctgtaacaaattact	7	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53723655	C	C	53723655	1	2	54	0	1	0	0	0	0	0	0	0	12628	1508	52	5		5	PRKG1	10	53723655	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	523044	53723655	81811092	2527	59121											
MBL2	4153	broad.mit.edu	37	chr10	54530522	54530522	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccaactttccaggggggCcctgtaagcctctgagccct	11	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54530522	T	T	54530522	3	4	54	1	0	0	0	0	1	0	0	0	9443	739	26	4	546	4	MBL2	10	54530522	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	806867	54530522	81004225	2528	59122											
PCDH15	65217	broad.mit.edu	37	chr10	55890550	55890550	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtaggtagtgctagagtgtGaaaaggatgaggatggaggc	18	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890550	T	T	55890550	1	4	54	0	1	0	0	0	0	0	0	0	11605	1305	45	3		3	PCDH15	10	55890550	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1360028	55890550	79644197	2529	59123											
PCDH15	65217	broad.mit.edu	37	chr10	55955663	55955663	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcagcctaaaattgaaaaGaaaagaaaatatttagaaag	7	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55955663	T	T	55955663	1	4	54	0	1	0	0	0	0	0	0	0	11605	957	33	3		3	PCDH15	10	55955663	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	65113	55955663	79579084	2530	59124											
PCDH15	65217	broad.mit.edu	37	chr10	56138714	56138714	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattgtacctgcaaaccaaAgaaaggtacttgaaaacata	7	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56138714	G	G	56138714	1	3	54	0	1	0	0	0	0	0	0	0	11605	87	3	5		5	PCDH15	10	56138714	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	183051	56138714	79396033	2531	59125											
PCDH15	65217	broad.mit.edu	37	chr10	56215501	56215501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcagagaacttcacaataGcccctcccatcacaggcctg	7	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56215501	T	T	56215501	1	4	54	0	1	0	0	0	0	0	0	0	11605	986	34	3		3	PCDH15	10	56215501	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	76787	56215501	79319246	2532	59126											
PCDH15	65217	broad.mit.edu	37	chr10	56885407	56885407	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccattacgagagaaaaaaagCaaaatctcatcagctaccag	6	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56885407	G	G	56885407	1	3	54	0	1	0	0	0	0	0	0	0	11605	725	25	4		4	PCDH15	10	56885407	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	669906	56885407	78649340	2533	59127											
PCDH15	65217	broad.mit.edu	37	chr10	56890008	56890008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtaagtggtcaagggaaGtctgaaatttgaggagactc	14	4	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56890008	T	T	56890008	1	4	54	0	1	0	0	0	0	0	0	0	11605	1044	36	3		3	PCDH15	10	56890008	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4601	56890008	78644739	2534	59128											
PCDH15	65217	broad.mit.edu	37	chr10	57203465	57203466	+	Intron	DNP	CC	AA	AA													gggagtgtaaataagttcaaCcatcgttgaagacagtgtgg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	57203466	AA	AA	57203465	1	1	54	0	1	0	0	0	0	0	0	0	11605	522	18	3		3	PCDH15	10	57203465	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	313457	57203465	78331282	2535	59129											
BICC1	80114	broad.mit.edu	37	chr10	60574818	60574818	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actcctgggctgtataaacaGatgagagctgacattgtcat	10	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60574818	C	C	60574818	1	2	54	0	1	0	0	0	0	0	0	0	1433	957	33	4		4	BICC1	10	60574818	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3371353	60574818	74959929	2536	59130											
FAM13C	220965	broad.mit.edu	37	chr10	61012527	61012527	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcagaccagaaggagttaaGaggagactccacacttagga	11	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61012527	T	T	61012527	1	4	54	0	1	0	0	0	0	0	0	0	5500	957	33	3		3	FAM13C	10	61012527	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	437709	61012527	74522220	2537	59131											
FAM13C	220965	broad.mit.edu	37	chr10	61030334	61030334	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaaacaagaggaagagAggggagaggagtccccagaa	15	5	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61030334	G	G	61030334	1	3	54	0	1	0	0	0	0	0	0	0	5500	319	11	5		5	FAM13C	10	61030334	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	17807	61030334	74504413	2538	59132											
FAM13C	220965	broad.mit.edu	37	chr10	61115509	61115509	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaattttgtcaagaggTaaaaatctagtagaagagat	8	3	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61115509	A	A	61115509	1	1	54	0	1	0	0	0	0	0	0	0	5500	1653	57	5		5	FAM13C	10	61115509	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	85175	61115509	74419238	2539	59133											
ANK3	288	broad.mit.edu	37	chr10	61973136	61973136	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tataaccatcaaaataaataCagtccaatgtccagaaacct	3	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61973136	G	G	61973136	1	3	54	0	1	0	0	0	0	0	0	0	622	493	17	4		4	ANK3	10	61973136	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	857627	61973136	73561611	2540	59134											
ANK3	288	broad.mit.edu	37	chr10	62039287	62039287	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaaaaattcaataataactCcagctaacctgattgcaaat	3	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62039287	A	A	62039287	1	1	54	0	1	0	0	0	0	0	0	0	622	870	30	3		3	ANK3	10	62039287	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	66151	62039287	73495460	2541	59135											
CDK1	983	broad.mit.edu	37	chr10	62551691	62551691	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagaagtattgctggggtCagctcgttactcaactccag	10	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62551691	T	T	62551691	3	4	54	1	0	0	0	0	1	0	0	0	3154	838	29	4	563	4	CDK1	10	62551691	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	512404	62551691	72983056	2542	59136											
ZNF365	22891	broad.mit.edu	37	chr10	64298462	64298462	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaacgcaagataagttttaGagaggatgtggagaaaaagg	13	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64298462	C	C	64298462	1	2	54	0	1	0	0	0	0	0	0	0	17995	957	33	4		4	ZNF365	10	64298462	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1746771	64298462	71236285	2543	59137											
ZNF365	22891	broad.mit.edu	37	chr10	64311704	64311704	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacgacccctatcttaccctCctgaggcagcgtttctcttt	6	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64311704	G	G	64311704	1	3	54	0	1	0	0	0	0	0	0	0	17995	870	30	4		4	ZNF365	10	64311704	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13242	64311704	71223043	2544	59138											
ZNF365	22891	broad.mit.edu	37	chr10	64415418	64415418	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttggttcctttcagtagcaGactcagaaccagacctattc	7	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64415418	T	T	64415418	1	4	54	0	1	0	0	0	0	0	0	0	17995	957	33	3		3	ZNF365	10	64415418	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	103714	64415418	71119329	2545	59139											
CTNNA3	29119	broad.mit.edu	37	chr10	67726293	67726293	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttacctaaaagatttggTcatgtaaacaagggtgtagt	9	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67726293	C	C	67726293	1	2	54	0	1	0	0	0	0	0	0	0	4048	1682	58	5		5	CTNNA3	10	67726293	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3310875	67726293	67808454	2546	59140											
CTNNA3	29119	broad.mit.edu	37	chr10	68040446	68040446	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatttatacagtagtttccAggaaatgtagaatttggttt	10	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68040446	T	T	68040446	1	4	54	0	1	0	0	0	0	0	0	0	4048	203	7	5		5	CTNNA3	10	68040446	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	314153	68040446	67494301	2547	59141											
HERC4	26091	broad.mit.edu	37	chr10	69748293	69748293	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaaagtatagataactttTccaaatttctataatatgca	5	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69748293	G	G	69748293	1	3	54	0	1	0	0	0	0	0	0	0	7127	1798	62	5		5	HERC4	10	69748293	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1707847	69748293	65786454	2548	59142											
PBLD	64081	broad.mit.edu	37	chr10	70052058	70052058	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatatgcgcatgtccatttCaaacacctttgcattgtctt	5	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70052058	G	G	70052058	1	3	54	0	1	0	0	0	0	0	0	0	11583	841	29	4		4	PBLD	10	70052058	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	303765	70052058	65482689	2549	59143											
HKDC1	80201	broad.mit.edu	37	chr10	70987150	70987150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagttgtccgctgccagGgtccctggctcctcttggct	13	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70987150	T	T	70987150	1	4	54	0	1	0	0	0	0	0	0	0	7260	1247	43	2		2	HKDC1	10	70987150	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	935092	70987150	64547597	2550	59144											
HK1	3098	broad.mit.edu	37	chr10	71129170	71129170	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caccctccccgttgtgtggtCatagcttctgatcttgtcct	8	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71129170	G	G	71129170	1	3	54	0	1	0	0	0	0	0	0	0	7257	841	29	4		4	HK1	10	71129170	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	142020	71129170	64405577	2551	59145											
COL13A1	1305	broad.mit.edu	37	chr10	71604833	71604834	+	Intron	DNP	CC	AA	AA													cctatagagacaaacaaaacCcatccagacctgccttgctt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	71604834	AA	AA	71604833	1	1	54	0	1	0	0	0	0	0	0	0	3702	638	22	2		2	COL13A1	10	71604833	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	475663	71604833	63929914	2552	59146											
COL13A1	1305	broad.mit.edu	37	chr10	71697376	71697376	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgtgtgatctcgtcccctCtccctttcctccagggggaa	9	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71697376	T	T	71697376	1	4	54	0	1	0	0	0	0	0	0	0	3702	928	32	4		4	COL13A1	10	71697376	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92543	71697376	63837371	2553	59147											
COL13A1	1305	broad.mit.edu	37	chr10	71716612	71716612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccttctgaggttctgacCtgtagtagagaaaagaaata	9	8	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71716612	A	A	71716612	1	1	54	0	1	0	0	0	0	0	0	0	3702	696	24	2		2	COL13A1	10	71716612	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	19236	71716612	63818135	2554	59148											
UNC5B	219699	broad.mit.edu	37	chr10	73048446	73048446	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtgactgcagcgggacGctgctcgactctaagaactg	14	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73048446	T	T	73048446	2	4	54	1	0	0	0	0	0	0	0	1	17118	1074	38	3		3	UNC5B	10	73048446	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1331834	73048446	62486301	2555	59149											
CDH23	64072	broad.mit.edu	37	chr10	73193319	73193319	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttccagcccatcctggacCttggctgagcatgtccagct	10	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73193319	T	T	73193319	1	4	54	0	1	0	0	0	0	0	0	0	3138	696	24	4		4	CDH23	10	73193319	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	144873	73193319	62341428	2556	59150											
TTC18	118491	broad.mit.edu	37	chr10	75059368	75059368	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctttggcacttgccttctGagctcctcctgtccgacggg	12	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75059368	A	A	75059368	4	1	54	1	0	0	0	0	0	1	0	0	16811	1299	45	4	1903	4	TTC18	10	75059368	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1866049	75059368	60475379	2557	59151											
USP54	159195	broad.mit.edu	37	chr10	75258979	75258979	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaacccaaagactgagcAtcttcagaaaaccattctcc	5	12	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75258979	T	T	75258979	1	4	54	0	1	0	0	0	0	0	0	0	17212	232	8	5		5	USP54	10	75258979	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	199611	75258979	60275768	2558	59152											
C10orf11	83938	broad.mit.edu	37	chr10	77542852	77542852	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccttttaaatagcaatgatGaaggctggctgtcagggtag	13	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77542852	A	A	77542852	1	1	54	0	1	0	0	0	0	0	0	0	1593	1305	45	4		4	C10orf11	10	77542852	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2283873	77542852	57991895	2559	59153											
C10orf11	83938	broad.mit.edu	37	chr10	77570224	77570224	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacacccaatattgggcaTagtggagctgaaggaacaaa	12	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77570224	C	C	77570224	1	2	54	0	1	0	0	0	0	0	0	0	1593	1421	49	5		5	C10orf11	10	77570224	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	27372	77570224	57964523	2560	59154											
C10orf11	83938	broad.mit.edu	37	chr10	77845872	77845872	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acacatattctgatttttttCtagttcctcgccttacccca	3	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77845872	G	G	77845872	1	3	54	0	1	0	0	0	0	0	0	0	1593	928	32	4		4	C10orf11	10	77845872	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	275648	77845872	57688875	2561	59155											
KCNMA1	3778	broad.mit.edu	37	chr10	79271157	79271157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatccattctcttctgggaCaagttcttaaaggaagcatt	7	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79271157	A	A	79271157	1	1	54	0	1	0	0	0	0	0	0	0	8143	493	17	3		3	KCNMA1	10	79271157	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1425285	79271157	56263590	2562	59156											
DLG5	9231	broad.mit.edu	37	chr10	79626858	79626858	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccatcgcaaggactgagtCagcttcaggtgagtgcagaa	12	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79626858	G	G	79626858	1	3	54	0	1	0	0	0	0	0	0	0	4598	841	29	4		4	DLG5	10	79626858	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	355701	79626858	55907889	2563	59157											
MAT1A	4143	broad.mit.edu	37	chr10	82043561	82043561	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtgtaggagtgttttcctCctggtagtattgatgctccc	11	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82043561	A	A	82043561	1	1	54	0	1	0	0	0	0	0	0	0	9421	870	30	3		3	MAT1A	10	82043561	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2416703	82043561	53491186	2564	59158											
SH2D4B	387694	broad.mit.edu	37	chr10	82330201	82330201	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggccgggctggtctcaaactCctgacctcaggtgagccacc	12	15	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82330201	G	G	82330201	1	3	54	0	1	0	0	0	0	0	0	0	14349	870	30	4		4	SH2D4B	10	82330201	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	286640	82330201	53204546	2565	59159											
SH2D4B	387694	broad.mit.edu	37	chr10	82331308	82331308	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaaggctgccaaagtcctgGaggaacgcatccacgaggaa	13	11	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82331308	C	C	82331308	3	2	54	1	0	0	0	0	1	0	0	0	14349	1175	41	4	520	4	SH2D4B	10	82331308	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1107	82331308	53203439	2566	59160											
NRG3	10718	broad.mit.edu	37	chr10	83658165	83658165	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccacgtgctggaaattctTcagcctgaggtgaggctgtc	13	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83658165	A	A	83658165	1	1	54	0	1	0	0	0	0	0	0	0	10744	1798	62	5		5	NRG3	10	83658165	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1326857	83658165	51876582	2567	59161											
NRG3	10718	broad.mit.edu	37	chr10	84219008	84219008	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagcctttaccttgcatTgctgtgcattgctgtaggct	11	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84219008	G	G	84219008	1	3	54	0	1	0	0	0	0	0	0	0	10744	1827	63	5		5	NRG3	10	84219008	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	560843	84219008	51315739	2568	59162											
NRG3	10718	broad.mit.edu	37	chr10	84267236	84267236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaagcctgaagggaacaGgtgtgaaaaacctatatcca	9	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84267236	T	T	84267236	1	4	54	0	1	0	0	0	0	0	0	0	10744	1015	35	2		2	NRG3	10	84267236	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	48228	84267236	51267511	2569	59163											
NRG3	10718	broad.mit.edu	37	chr10	84399061	84399061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggtaaacaggctcccttGggcctcttttataaggctac	10	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84399061	T	T	84399061	1	4	54	0	1	0	0	0	0	0	0	0	10744	1363	47	2		2	NRG3	10	84399061	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	131825	84399061	51135686	2570	59164											
NRG3	10718	broad.mit.edu	37	chr10	84462708	84462708	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taataatactatgttcagacTccactgtttctgccattttt	4	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84462708	A	A	84462708	1	1	54	0	1	0	0	0	0	0	0	0	10744	1566	54	5		5	NRG3	10	84462708	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	63647	84462708	51072039	2571	59165											
LRIT1	26103	broad.mit.edu	37	chr10	85994140	85994140	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttgtcctgtagccctgcaGgagtaaaaaagaagacaaga	12	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85994140	A	A	85994140	1	1	54	0	1	0	0	0	0	0	0	0	9034	1015	35	4		4	LRIT1	10	85994140	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1531432	85994140	49540607	2572	59166											
LRIT1	26103	broad.mit.edu	37	chr10	86000937	86000937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatgcagcacagtccaccCcataggatccctggtcctca	7	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86000937	A	A	86000937	1	1	54	0	1	0	0	0	0	0	0	0	9034	638	22	2		2	LRIT1	10	86000937	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6797	86000937	49533810	2573	59167											
GRID1	2894	broad.mit.edu	37	chr10	87501397	87501397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccctatctaagcctccCtcaatccagctgccaggttt	5	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87501397	A	A	87501397	1	1	54	0	1	0	0	0	0	0	0	0	6837	696	24	2		2	GRID1	10	87501397	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1500460	87501397	48033350	2574	59168											
GRID1	2894	broad.mit.edu	37	chr10	87648464	87648464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagttctctcctcatccCttttttcttgtcacctactt	2	16	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87648464	A	A	87648464	1	1	54	0	1	0	0	0	0	0	0	0	6837	696	24	2		2	GRID1	10	87648464	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	147067	87648464	47886283	2575	59169											
GRID1	2894	broad.mit.edu	37	chr10	87845158	87845158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggaactggcagatgcaGgcaagtgtgagaaaatgtgg	18	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87845158	A	A	87845158	1	1	54	0	1	0	0	0	0	0	0	0	6837	1015	35	4		4	GRID1	10	87845158	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	196694	87845158	47689589	2576	59170											
GRID1	2894	broad.mit.edu	37	chr10	87848266	87848266	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaacagctgtcacgtcccAgagagcatggggatcccagc	12	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87848266	T	T	87848266	1	4	54	0	1	0	0	0	0	0	0	0	6837	203	7	5		5	GRID1	10	87848266	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3108	87848266	47686481	2577	59171											
GRID1	2894	broad.mit.edu	37	chr10	87851596	87851596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaacccccaataccagcCccgagccgggtagactcgct	9	17	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87851596	A	A	87851596	1	1	54	0	1	0	0	0	0	0	0	0	6837	638	22	2		2	GRID1	10	87851596	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3330	87851596	47683151	2578	59172											
FAM35A	54537	broad.mit.edu	37	chr10	88876745	88876745	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggttggtgttcaagactgGatagtggaattgaagattga	15	2	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88876745	A	A	88876745	1	1	54	0	1	0	0	0	0	0	0	0	5604	1189	41	4		4	FAM35A	10	88876745	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1025149	88876745	46658002	2579	59173											
FAM35A	54537	broad.mit.edu	37	chr10	88911685	88911685	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaattaatatagggcctGaagtggtacaaagagagtgt	11	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88911685	A	A	88911685	3	1	54	1	0	0	0	0	1	0	0	0	5604	1291	45	4	576	4	FAM35A	10	88911685	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	34940	88911685	46623062	2580	59174											
MINPP1	9562	broad.mit.edu	37	chr10	89296519	89296519	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttaagaccaagtagtattCtgttacatagatccaccacc	5	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89296519	A	A	89296519	1	1	54	0	1	0	0	0	0	0	0	0	9681	928	32	3		3	MINPP1	10	89296519	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	384834	89296519	46238228	2581	59175											
ATAD1	84896	broad.mit.edu	37	chr10	89527380	89527380	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttctctaaaataactttAtgaacatcagatttatagga	4	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89527380	G	G	89527380	1	3	54	0	1	0	0	0	0	0	0	0	1074	464	16	5		5	ATAD1	10	89527380	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	230861	89527380	46007367	2582	59176											
PTEN	5728	broad.mit.edu	37	chr10	89720851	89720851	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaaataaagacaaagccaaCcgatacttttctccaaattt	4	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89720851	G	G	89720851	3	3	54	1	0	0	0	0	1	0	0	0	12844	506	18	4	1032	4	PTEN	10	89720851	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	193471	89720851	45813896	2583	59177											
HTR7	3363	broad.mit.edu	37	chr10	92502209	92502209	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttccacctctattttgcCttgtttatttcatctccatt	3	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92502209	A	A	92502209	1	1	54	0	1	0	0	0	0	0	0	0	7522	696	24	2		2	HTR7	10	92502209	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2781358	92502209	43032538	2584	59178											
HTR7	3363	broad.mit.edu	37	chr10	92523259	92523259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacgtgtgcagaacatgaaGgtttgttacatacgtataca	9	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92523259	T	T	92523259	1	4	54	0	1	0	0	0	0	0	0	0	7522	1015	35	2		2	HTR7	10	92523259	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21050	92523259	43011488	2585	59179											
CPEB3	22849	broad.mit.edu	37	chr10	93904939	93904939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgctctattagaagccCgaagtgcagagagaagcata	10	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93904939	A	A	93904939	1	1	54	0	1	0	0	0	0	0	0	0	3834	667	23	1		1	CPEB3	10	93904939	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1381680	93904939	41629808	2586	59180											
MYOF	26509	broad.mit.edu	37	chr10	95150191	95150191	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaactagtgcacgcagccTaaggttgagacttggtaaca	10	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95150191	C	C	95150191	1	2	54	0	1	0	0	0	0	0	0	0	10183	1537	53	5		5	MYOF	10	95150191	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1245252	95150191	40384556	2587	59181											
PLCE1	51196	broad.mit.edu	37	chr10	95897449	95897449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatagagtggagggaagatGgacctgctgaggccagcaag	16	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95897449	T	T	95897449	1	4	54	0	1	0	0	0	0	0	0	0	12129	1363	47	2		2	PLCE1	10	95897449	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	747258	95897449	39637298	2588	59182											
PLCE1	51196	broad.mit.edu	37	chr10	96012741	96012741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagcatgagcactctgtgGgcaaggaagggctagaagag	16	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96012741	T	T	96012741	1	4	54	0	1	0	0	0	0	0	0	0	12129	1247	43	2		2	PLCE1	10	96012741	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	115292	96012741	39522006	2589	59183											
CYP2C19	1557	broad.mit.edu	37	chr10	96602530	96602530	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcatgattcatgtacccctGaattgctagaacaaatgttc	6	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96602530	T	T	96602530	1	4	54	0	1	0	0	0	0	0	0	0	4199	1305	45	3		3	CYP2C19	10	96602530	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	589789	96602530	38932217	2590	59184											
PDLIM1	9124	broad.mit.edu	37	chr10	97028535	97028535	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgatgagcaagaacttacCtggggttcagaggctaaatt	11	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97028535	G	G	97028535	3	3	54	1	0	0	0	0	1	0	0	0	11773	695	24	4	676	4	PDLIM1	10	97028535	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	426005	97028535	38506212	2591	59185											
TLL2	7093	broad.mit.edu	37	chr10	98136417	98136417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgcctgatactcaagtcCacattctcaataaactacaa	3	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98136417	A	A	98136417	1	1	54	0	1	0	0	0	0	0	0	0	16069	609	21	2		2	TLL2	10	98136417	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1107882	98136417	37398330	2592	59186											
PIK3AP1	118788	broad.mit.edu	37	chr10	98380187	98380187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcacagcctcatccacGttgacaatgcccagcttcac	8	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98380187	T	T	98380187	3	4	54	1	0	0	0	0	1	0	0	0	12003	1136	40	3	578	3	PIK3AP1	10	98380187	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	243770	98380187	37154560	2593	59187											
RRP12	23223	broad.mit.edu	37	chr10	99161075	99161075	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacccacgtggataccctgTagccttcacttcctcttctt	6	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99161075	A	A	99161075	1	1	54	0	1	0	0	0	0	0	0	0	13797	1653	57	5		5	RRP12	10	99161075	5'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	780888	99161075	36373672	2594	59188											
HPS1	3257	broad.mit.edu	37	chr10	100182429	100182429	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccctgtatccttgcttcctCagatcccccactacctccaa	3	20	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100182429	G	G	100182429	1	3	54	0	1	0	0	0	0	0	0	0	7406	841	29	4		4	HPS1	10	100182429	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1021354	100182429	35352318	2595	59189											
HPSE2	60495	broad.mit.edu	37	chr10	100471829	100471829	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttgtgagggaaagaagaggGaacagaggaaaaactggaaa	16	2	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100471829	A	A	100471829	1	1	54	0	1	0	0	0	0	0	0	0	7412	1189	41	4		4	HPSE2	10	100471829	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	289400	100471829	35062918	2596	59190											
HPSE2	60495	broad.mit.edu	37	chr10	100531301	100531301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgataactagaattaaagcCcaggatagcccaactaagaa	7	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100531301	A	A	100531301	1	1	54	0	1	0	0	0	0	0	0	0	7412	638	22	2		2	HPSE2	10	100531301	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	59472	100531301	35003446	2597	59191											
ABCC2	1244	broad.mit.edu	37	chr10	101553456	101553456	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttacaggtaaggaaaaaaaGagtggatgacatgaggaggt	14	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101553456	C	C	101553456	1	2	54	0	1	0	0	0	0	0	0	0	53	957	33	4		4	ABCC2	10	101553456	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1022155	101553456	33981291	2598	59192											
ABCC2	1244	broad.mit.edu	37	chr10	101571611	101571611	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagctgtgatcccatgaaGacatttgtgtgtgcagattg	11	8	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101571611	T	T	101571611	1	4	54	0	1	0	0	0	0	0	0	0	53	957	33	3		3	ABCC2	10	101571611	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	18155	101571611	33963136	2599	59193											
ABCC2	1244	broad.mit.edu	37	chr10	101611400	101611400	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattctagcagaaggccccAtgggttagaaaaggactata	10	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101611400	G	G	101611400	1	3	54	0	1	0	0	0	0	0	0	0	53	232	8	5		5	ABCC2	10	101611400	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	39789	101611400	33923347	2600	59194											
PAX2	5076	broad.mit.edu	37	chr10	102526346	102526346	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatcaggcagacctgttctCgtttggtaaagtcgtaactg	10	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102526346	A	A	102526346	1	1	54	0	1	0	0	0	0	0	0	0	11573	899	31	3		3	PAX2	10	102526346	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	914946	102526346	33008401	2601	59195											
PAX2	5076	broad.mit.edu	37	chr10	102546500	102546500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaggggctgtcctgagcCtgcctccaggggtggcctag	18	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102546500	A	A	102546500	1	1	54	0	1	0	0	0	0	0	0	0	11573	696	24	2		2	PAX2	10	102546500	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	20154	102546500	32988247	2602	59196											
PAX2	5076	broad.mit.edu	37	chr10	102558149	102558149	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccaaagtgctgggattacAggagtgagccactgcacccg	12	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102558149	T	T	102558149	1	4	54	0	1	0	0	0	0	0	0	0	11573	203	7	5		5	PAX2	10	102558149	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	11649	102558149	32976598	2603	59197											
FBXW4	6468	broad.mit.edu	37	chr10	103431514	103431514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatggtacaaagacagtgaCcaatcagaagcctgaagtaa	10	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103431514	T	T	103431514	1	4	54	0	1	0	0	0	0	0	0	0	5824	522	18	4		4	FBXW4	10	103431514	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	873365	103431514	32103233	2604	59198											
C10orf76	79591	broad.mit.edu	37	chr10	103649264	103649264	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgaaacaaagaattcGtattaatatggtgccagata	9	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103649264	C	C	103649264	1	2	54	0	1	0	0	0	0	0	0	0	1627	1160	40	4		4	C10orf76	10	103649264	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	217750	103649264	31885483	2605	59199											
SLK	9748	broad.mit.edu	37	chr10	105765313	105765313	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaactaaaataaaatctcActcaggaaacaagaagacaa	4	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105765313	G	G	105765313	1	3	54	0	1	0	0	0	0	0	0	0	14862	174	6	5		5	SLK	10	105765313	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2116049	105765313	29769434	2606	59200											
COL17A1	1308	broad.mit.edu	37	chr10	105809941	105809941	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgagcaaggaaaacactctCacccagtaacagggtccccg	10	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105809941	A	A	105809941	1	1	54	0	1	0	0	0	0	0	0	0	3706	841	29	3		3	COL17A1	10	105809941	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	44628	105809941	29724806	2607	59201											
SORCS3	22986	broad.mit.edu	37	chr10	106486200	106486200	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtaggccaacgtggtgGgtgatgagggttgggtaagg	20	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106486200	A	A	106486200	1	1	54	0	1	0	0	0	0	0	0	0	15046	1247	43	4		4	SORCS3	10	106486200	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	676259	106486200	29048547	2608	59202											
SORCS3	22986	broad.mit.edu	37	chr10	106635017	106635017	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctgacttctgaagtgggAtatgcattgcatcaaggatg	11	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106635017	G	G	106635017	1	3	54	0	1	0	0	0	0	0	0	0	15046	348	12	5		5	SORCS3	10	106635017	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	148817	106635017	28899730	2609	59203											
SORCS3	22986	broad.mit.edu	37	chr10	106679598	106679598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatgttgacagtgcacaCgtagtctacattctaacttt	7	9	2	2	rs116767399	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106679598	A	A	106679598	1	1	54	0	1	0	0	0	0	0	0	0	15046	551	19	3		3	SORCS3	10	106679598	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	44581	106679598	28855149	2610	59204											
SORCS3	22986	broad.mit.edu	37	chr10	106976530	106976530	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagtgcctgcccgtagtaCcctgcggatcagataggagt	12	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106976530	T	T	106976530	1	4	54	0	1	0	0	0	0	0	0	0	15046	522	18	4		4	SORCS3	10	106976530	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	296932	106976530	28558217	2611	59205											
SORCS3	22986	broad.mit.edu	37	chr10	106983098	106983098	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctattagggggcactgagaaTgcaggcaataagaggtactt	13	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106983098	A	A	106983098	1	1	54	0	1	0	0	0	0	0	0	0	15046	1479	51	5		5	SORCS3	10	106983098	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	6568	106983098	28551649	2612	59206											
SORCS1	114815	broad.mit.edu	37	chr10	108378051	108378051	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaaaataaacaagggcccaGagtgaagggaaagctcttta	10	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108378051	A	A	108378051	1	1	54	0	1	0	0	0	0	0	0	0	15044	957	33	4		4	SORCS1	10	108378051	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1394953	108378051	27156696	2613	59207											
SORCS1	114815	broad.mit.edu	37	chr10	108434828	108434828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatgatgagagtctcttctCcaggctcacccagaacccca	7	15	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108434828	A	A	108434828	3	1	54	1	0	0	0	0	1	0	0	0	15044	855	30	3	1873	3	SORCS1	10	108434828	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	56777	108434828	27099919	2614	59208											
SORCS1	114815	broad.mit.edu	37	chr10	108896201	108896201	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgttcagattgcatagccAtcaaagcttgaaaacagtgg	9	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108896201	T	T	108896201	1	4	54	0	1	0	0	0	0	0	0	0	15044	232	8	5		5	SORCS1	10	108896201	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	461373	108896201	26638546	2615	59209											
PDCD4	27250	broad.mit.edu	37	chr10	112641182	112641182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagaggcgattcggtcagcGacagtgggagtgacgccctt	16	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112641182	T	T	112641182	3	4	54	1	0	0	0	0	1	0	0	0	11715	1058	37	3	255	3	PDCD4	10	112641182	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3744981	112641182	22893565	2616	59210											
PDCD4	27250	broad.mit.edu	37	chr10	112655755	112655755	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacattaatctggatgtccCacattcatactctgtgctgg	9	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112655755	T	T	112655755	3	4	54	1	0	0	0	0	1	0	0	0	11715	594	21	4	1311	4	PDCD4	10	112655755	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14573	112655755	22878992	2617	59211											
NRAP	4892	broad.mit.edu	37	chr10	115423527	115423527	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgagaaggtcaatttccTgtgtttgttattattcacaa	8	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115423527	A	A	115423527	1	1	54	0	1	0	0	0	0	0	0	0	10733	1595	55	5		5	NRAP	10	115423527	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2767772	115423527	20111220	2618	59212											
DCLRE1A	9937	broad.mit.edu	37	chr10	115601366	115601366	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtaaacttacagcttgtgAaaaaaagttacagcttaagc	7	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115601366	G	G	115601366	1	3	54	0	1	0	0	0	0	0	0	0	4327	261	9	5		5	DCLRE1A	10	115601366	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	177839	115601366	19933381	2619	59213											
AFAP1L2	84632	broad.mit.edu	37	chr10	116146894	116146894	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggagcaaattagcaataGctatggtagcactgcaggct	11	8	1	0	rs150088246	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116146894	A	A	116146894	1	1	54	0	1	0	0	0	0	0	0	0	355	986	34	4		4	AFAP1L2	10	116146894	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	545528	116146894	19387853	2620	59214											
C10orf96	374355	broad.mit.edu	37	chr10	118101594	118101594	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaagacaaatttattaAggaaattacagactttaata	8	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118101594	C	C	118101594	3	2	54	1	0	0	0	0	1	0	0	0	1638	72	3	5	343	5	C10orf96	10	118101594	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1954700	118101594	17433153	2621	59215											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118215230	118215230	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattctgttaaacaattcttTcagaaaaaatttgaatattc	3	5	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118215230	C	C	118215230	1	2	54	0	1	0	0	0	0	0	0	0	12247	1798	62	5		5	PNLIPRP3	10	118215230	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	113636	118215230	17319517	2622	59216											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118220564	118220564	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaactttgttgacgttattCatacaaatgcagctcgcatc	6	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118220564	A	A	118220564	3	1	54	1	0	0	0	0	1	0	0	0	12247	826	29	3	674	3	PNLIPRP3	10	118220564	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5334	118220564	17314183	2623	59217											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118359630	118359630	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggaaagcatcctcaatcccGatgggtttgctgcatatccc	9	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118359630	A	A	118359630	3	1	54	1	0	0	0	0	1	0	0	0	12245	1058	37	4	916	4	PNLIPRP1	10	118359630	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	139066	118359630	17175117	2624	59218											
SLC18A2	6571	broad.mit.edu	37	chr10	119003683	119003684	+	Missense_Mutation	DNP	CC	AA	AA													cgccacacagcacatggtgaCcaacgcgtccgctgttcctt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	119003684	AA	AA	119003683	3	1	54	1	0	0	0	0	1	0	0	0	14539	507	18	3	329	3	SLC18A2	10	119003683	Missense_Mutation	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	644053	119003683	16531064	2625	59219											
SLC18A2	6571	broad.mit.edu	37	chr10	119027183	119027183	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgtttatttcctcttacaGattccatttgcaaaaaacat	3	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119027183	T	T	119027183	5	4	54	1	0	0	0	0	0	0	1	0	14539	956	33	3	1168	3	SLC18A2	10	119027183	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23500	119027183	16507564	2626	59220											
PRLHR	2834	broad.mit.edu	37	chr10	120353677	120353678	+	Frame_Shift_Ins	INS	-	T	T													tgacggtcatattctggccaINStggggggctatcttgcgggg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120353678	T	T	120353677	7	5	54	1	0	1	1	0	0	0	0	0	12636	214	8	0	36	0	PRLHR	10	120353677	Frame_Shift_Ins	INS	-	TCGA-17-Z022-01A-01W-0746-08	1326494	120353677	15181070	2627	59221											
SFXN4	119559	broad.mit.edu	37	chr10	120900553	120900553	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtgtcagacggggcaccCtcccactgtcttctccagcc	12	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120900553	T	T	120900553	1	4	54	0	1	0	0	0	0	0	0	0	14310	696	24	4		4	SFXN4	10	120900553	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	546876	120900553	14634194	2628	59222											
GRK5	2869	broad.mit.edu	37	chr10	121212278	121212278	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagacgacgacttctactcCaagttctccacgggctctgt	8	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121212278	G	G	121212278	2	3	54	1	0	0	0	0	0	0	0	1	6858	581	21	4		4	GRK5	10	121212278	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	311725	121212278	14322469	2629	59223											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122288184	122288184	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgccaaataaaggaagactCcccctagatcctgggaggct	10	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122288184	T	T	122288184	1	4	54	0	1	0	0	0	0	0	0	0	12389	870	30	4		4	PPAPDC1A	10	122288184	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1075906	122288184	13246563	2630	59224											
CTBP2	1488	broad.mit.edu	37	chr10	126678348	126678348	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttctacttctggccttttCataagagacaggagcccagt	8	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126678348	T	T	126678348	1	4	54	0	1	0	0	0	0	0	0	0	4032	841	29	4		4	CTBP2	10	126678348	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4390164	126678348	8856399	2631	59225											
C10orf137	26098	broad.mit.edu	37	chr10	127408432	127408432	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccggccggggccgccgctcGaggagggctcagcctcctgt	17	16	1	0	rs61742141	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127408432	C	C	127408432	3	2	54	1	0	0	0	0	1	0	0	0	1605	1058	37	4	58	4	C10orf137	10	127408432	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	730084	127408432	8126315	2632	59226											
ADAM12	8038	broad.mit.edu	37	chr10	127763927	127763927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcagaacagcctatcaCacatcattccattattcccc	2	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127763927	A	A	127763927	1	1	54	0	1	0	0	0	0	0	0	0	236	493	17	3		3	ADAM12	10	127763927	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	355495	127763927	7770820	2633	59227											
ADAM12	8038	broad.mit.edu	37	chr10	127806514	127806514	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccagatgccgcatcatctAgatggcaacatttctccaga	7	14	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127806514	G	G	127806514	1	3	54	0	1	0	0	0	0	0	0	0	236	435	15	5		5	ADAM12	10	127806514	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	42587	127806514	7728233	2634	59228											
C10orf90	118611	broad.mit.edu	37	chr10	128306652	128306652	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatagggctccctcaccatGaggctcagaagagaatcttc	10	11	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128306652	A	A	128306652	1	1	54	0	1	0	0	0	0	0	0	0	1634	1305	45	4		4	C10orf90	10	128306652	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	500138	128306652	7228095	2635	59229											
DOCK1	1793	broad.mit.edu	37	chr10	128840848	128840848	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtgtgggggaagtccGgtgggttcacattgtcaccc	15	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128840848	A	A	128840848	1	1	54	0	1	0	0	0	0	0	0	0	4724	1131	39	4		4	DOCK1	10	128840848	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	534196	128840848	6693899	2636	59230											
DOCK1	1793	broad.mit.edu	37	chr10	129074636	129074636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatatttgggaggggacagGggggacaggcagcattaagc	19	5	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129074636	T	T	129074636	1	4	54	0	1	0	0	0	0	0	0	0	4724	1247	43	2		2	DOCK1	10	129074636	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	233788	129074636	6460111	2637	59231											
MKI67	4288	broad.mit.edu	37	chr10	129908547	129908547	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttgtgccaggaacattTgttttagagaagtaatatca	8	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129908547	C	C	129908547	1	2	54	0	1	0	0	0	0	0	0	0	9691	1827	63	5		5	MKI67	10	129908547	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	833911	129908547	5626200	2638	59232											
TCERG1L	256536	broad.mit.edu	37	chr10	132964995	132964995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaagcgtgagggtgtcCtggccctggtcctccacacc	11	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132964995	A	A	132964995	1	1	54	0	1	0	0	0	0	0	0	0	15808	696	24	2		2	TCERG1L	10	132964995	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3056448	132964995	2569752	2639	59233											
PWWP2B	170394	broad.mit.edu	37	chr10	134230548	134230548	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagttaaatctctgcccctTtttgctttcccccaaggtca	6	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134230548	C	C	134230548	1	2	54	0	1	0	0	0	0	0	0	0	12954	1856	64	5		5	PWWP2B	10	134230548	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1265553	134230548	1304199	2640	59234											
GPR123	84435	broad.mit.edu	37	chr10	134898421	134898421	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctcctgcctgggtccctCatggccgcgtgagccgcttc	12	17	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134898421	A	A	134898421	1	1	54	0	1	0	0	0	0	0	0	0	6702	841	29	3		3	GPR123	10	134898421	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	667873	134898421	636326	2641	59235											
KNDC1	85442	broad.mit.edu	37	chr10	135020334	135020334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctgcaggcagcccggcCcccacccactctgctccacc	9	22	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135020334	A	A	135020334	1	1	54	0	1	0	0	0	0	0	0	0	8497	638	22	2		2	KNDC1	10	135020334	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	121913	135020334	514413	2642	59236											
MTG1	92170	broad.mit.edu	37	chr10	135215527	135215527	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgagagtgacgctgccAtggggttgggtccctgaggc	18	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135215527	T	T	135215527	1	4	54	0	1	0	0	0	0	0	0	0	10020	232	8	5		5	MTG1	10	135215527	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	195193	135215527	319220	2643	59237											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651839	1651839	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagggcccggctgcccagCttccttgccctgggttctct	12	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1651839	A	A	1651839	1	1	54	0	1	0	0	0	0	0	0	0	8636	812	28	3		3	KRTAP5-5	11	1651839	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08		1651839	133354677	2644	59238											
OR52M1	119772	broad.mit.edu	37	chr11	4567179	4567179	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctctgtgccatcctgatCttttatgttcccattgctgt	6	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4567179	G	G	4567179	3	3	54	1	0	0	0	0	1	0	0	0	11220	903	32	4	761	4	OR52M1	11	4567179	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2915340	4567179	130439337	2645	59239											
C11orf40	143501	broad.mit.edu	37	chr11	4593625	4593625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattcaatttaccattcaCcaaaaacatcttggcttctt	3	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4593625	A	A	4593625	1	1	54	0	1	0	0	0	0	0	0	0	1651	522	18	3		3	C11orf40	11	4593625	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	26446	4593625	130412891	2646	59240											
OR51E2	81285	broad.mit.edu	37	chr11	4702688	4702688	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattagtaatttgagcacatTtcctccaaggcatatgctat	6	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4702688	A	A	4702688	1	1	54	0	1	0	0	0	0	0	0	0	11189	1856	64	5		5	OR51E2	11	4702688	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	109063	4702688	130303828	2647	59241											
OR52R1	119695	broad.mit.edu	37	chr11	4825034	4825034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgacttatgcttgtatcagCacacaccaacttcagcacag	6	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4825034	A	A	4825034	3	1	54	1	0	0	0	0	1	0	0	0	11225	710	25	3	373	3	OR52R1	11	4825034	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	122346	4825034	130181482	2648	59242											
OR52R1	119695	broad.mit.edu	37	chr11	4825412	4825412	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtgatggccagcatggCcagaaagaggtacatgggct	15	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4825412	T	T	4825412	3	4	54	1	0	0	0	0	1	0	0	0	11225	739	26	4	751	4	OR52R1	11	4825412	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	378	4825412	130181104	2649	59243											
OR51T1	401665	broad.mit.edu	37	chr11	4903203	4903203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attccctgggctggaatgtgCtcatgtctggatctccattc	10	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4903203	T	T	4903203	3	4	54	1	0	0	0	0	1	0	0	0	11200	797	28	4	157	4	OR51T1	11	4903203	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	77791	4903203	130103313	2650	59244											
MMP26	56547	broad.mit.edu	37	chr11	5010972	5010972	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaacaattccatcggaatgGgacagacctacttgacatgc	9	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5010972	A	A	5010972	3	1	54	1	0	0	0	0	1	0	0	0	9757	1232	43	4	200	4	MMP26	11	5010972	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	107769	5010972	129995544	2651	59245											
OR52J3	119679	broad.mit.edu	37	chr11	5068179	5068179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccatcttgacatcccaaGtgttggtgggcattagcatg	10	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5068179	T	T	5068179	3	4	54	1	0	0	0	0	1	0	0	0	11216	1029	36	3	426	3	OR52J3	11	5068179	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	57207	5068179	129938337	2652	59246											
OR52A1	23538	broad.mit.edu	37	chr11	5173040	5173040	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgctgctagtttcacaAtggccatatgctcacagtag	9	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5173040	G	G	5173040	3	3	54	1	0	0	0	0	1	0	0	0	11202	101	4	5	380	5	OR52A1	11	5173040	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	104861	5173040	129833476	2653	59247											
HBE1	3046	broad.mit.edu	37	chr11	5291160	5291160	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctagtgattgcagctgtgTcggaagcagatatgtgctgc	14	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5291160	C	C	5291160	1	2	54	0	1	0	0	0	0	0	0	0	7046	1682	58	5		5	HBE1	11	5291160	5'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	118120	5291160	129715356	2654	59248											
OR51B2	79345	broad.mit.edu	37	chr11	5344661	5344661	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcttggttttgatgctgtaGatgacagggttcattaaagg	13	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5344661	T	T	5344661	2	4	54	1	0	0	0	0	0	0	0	1	11183	932	33	3		3	OR51B2	11	5344661	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	53501	5344661	129661855	2655	59249											
OR51B5	282763	broad.mit.edu	37	chr11	5375409	5375409	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctgtctgttactgctctCtgtattgtcttccaagatat	6	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5375409	A	A	5375409	1	1	54	0	1	0	0	0	0	0	0	0	11185	928	32	3		3	OR51B5	11	5375409	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	30748	5375409	129631107	2656	59250											
OR51I2	390064	broad.mit.edu	37	chr11	5475122	5475122	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccttgcgctatgcaactgTgctcaccactgaagtcattg	8	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5475122	C	C	5475122	3	2	54	1	0	0	0	0	1	0	0	0	11195	1696	59	5	406	5	OR51I2	11	5475122	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	99713	5475122	129531394	2657	59251											
UBQLN3	50613	broad.mit.edu	37	chr11	5529428	5529428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagggagcaaatggaaccCtgttggcagaatctcccagc	11	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5529428	A	A	5529428	3	1	54	1	0	0	0	0	1	0	0	0	17024	681	24	2	610	2	UBQLN3	11	5529428	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	54306	5529428	129477088	2658	59252											
OR52E4	390081	broad.mit.edu	37	chr11	5906234	5906234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagatgtccgactaaagGccttcaatacctgtggttct	8	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5906234	T	T	5906234	3	4	54	1	0	0	0	0	1	0	0	0	11210	1203	42	3	714	3	OR52E4	11	5906234	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	376806	5906234	129100282	2659	59253											
OR56A1	120796	broad.mit.edu	37	chr11	6048502	6048502	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctttggccacaaattgatTagtgatgatggatgggtacc	12	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6048502	A	A	6048502	3	1	54	1	0	0	0	0	1	0	0	0	11227	1754	61	5	527	5	OR56A1	11	6048502	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	142268	6048502	128958014	2660	59254											
C11orf42	160298	broad.mit.edu	37	chr11	6231906	6231906	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggggaaatgatgatgagaTggatgggagggacaaagtga	18	1	0	4	rs144321453	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6231906	A	A	6231906	1	1	54	0	1	0	0	0	0	0	0	0	1653	1479	51	5		5	C11orf42	11	6231906	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	183404	6231906	128774610	2661	59255											
CCKBR	887	broad.mit.edu	37	chr11	6286794	6286794	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggtggaggctgggggtggGaggacaatggatttggagaa	22	2	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6286794	C	C	6286794	1	2	54	0	1	0	0	0	0	0	0	0	2909	1189	41	4		4	CCKBR	11	6286794	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	54888	6286794	128719722	2662	59256											
CCKBR	887	broad.mit.edu	37	chr11	6291483	6291483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actactcatggtgccctaccCcgtgtacactgtcgtgcaac	8	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6291483	A	A	6291483	3	1	54	1	0	0	0	0	1	0	0	0	2909	623	22	2	579	2	CCKBR	11	6291483	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4689	6291483	128715033	2663	59257											
HPX	3263	broad.mit.edu	37	chr11	6462289	6462289	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccacctccaactctactgGgaatgtgctgtctcccagga	8	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6462289	A	A	6462289	1	1	54	0	1	0	0	0	0	0	0	0	7413	1247	43	4		4	HPX	11	6462289	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	170806	6462289	128544227	2664	59258											
DNHD1	144132	broad.mit.edu	37	chr11	6587839	6587839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggttgtgaactgctaaaGgggctgaatgtgttggatct	14	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6587839	T	T	6587839	3	4	54	1	0	0	0	0	1	0	0	0	4708	991	35	2	11368	2	DNHD1	11	6587839	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	125550	6587839	128418677	2665	59259											
DCHS1	8642	broad.mit.edu	37	chr11	6644451	6644451	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccttcgggcacttggaagTggaaagctggtgccagaaat	13	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6644451	A	A	6644451	3	1	54	1	0	0	0	0	1	0	0	0	4320	1696	59	5	1444	5	DCHS1	11	6644451	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	56612	6644451	128362065	2666	59260											
NLRP14	338323	broad.mit.edu	37	chr11	7091627	7091627	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaataccttaggatatgAaggaattgtgaagttatata	9	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7091627	T	T	7091627	3	4	54	1	0	0	0	0	1	0	0	0	10571	246	9	5	3124	5	NLRP14	11	7091627	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	447176	7091627	127914889	2667	59261											
SYT9	143425	broad.mit.edu	37	chr11	7305509	7305509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagatactctttaaacctGcacagagctgagcctcaagt	8	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7305509	T	T	7305509	1	4	54	0	1	0	0	0	0	0	0	0	15600	1334	46	3		3	SYT9	11	7305509	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	213882	7305509	127701007	2668	59262											
SYT9	143425	broad.mit.edu	37	chr11	7361775	7361775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggtcaggcaggagcagGgttattgtgctagagtctga	16	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7361775	T	T	7361775	1	4	54	0	1	0	0	0	0	0	0	0	15600	1247	43	2		2	SYT9	11	7361775	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	56266	7361775	127644741	2669	59263											
SYT9	143425	broad.mit.edu	37	chr11	7390235	7390235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtatatatccagtaatGggattgcaagatcaaatggt	11	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7390235	T	T	7390235	1	4	54	0	1	0	0	0	0	0	0	0	15600	1363	47	2		2	SYT9	11	7390235	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28460	7390235	127616281	2670	59264											
OLFML1	283298	broad.mit.edu	37	chr11	7507195	7507195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgtacccaggacccagCcatggtgcattacatctacc	9	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7507195	A	A	7507195	3	1	54	1	0	0	0	0	1	0	0	0	10951	739	26	3	91	3	OLFML1	11	7507195	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	116960	7507195	127499321	2671	59265											
OVCH2	341277	broad.mit.edu	37	chr11	7722903	7722903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccctccatcaggaaaacCtgtgcaaagaaaggtcttcc	7	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7722903	A	A	7722903	3	1	54	1	0	0	0	0	1	0	0	0	11418	681	24	2	1054	2	OVCH2	11	7722903	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	215708	7722903	127283613	2672	59266											
EIF3F	8665	broad.mit.edu	37	chr11	8008914	8008914	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaagatggccacaccggcGgtaccagtaagtgctcctcc	11	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8008914	C	C	8008914	2	2	54	1	0	0	0	0	0	0	0	1	5058	1103	39	4		4	EIF3F	11	8008914	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	286011	8008914	126997602	2673	59267											
TUB	7275	broad.mit.edu	37	chr11	8087775	8087775	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagaaccaacaggtctgctCagacgctggacatgaggttc	11	12	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8087775	A	A	8087775	1	1	54	0	1	0	0	0	0	0	0	0	16868	841	29	3		3	TUB	11	8087775	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	78861	8087775	126918741	2674	59268											
RIC3	79608	broad.mit.edu	37	chr11	8158779	8158779	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggtttcatcatgttggtCaggatggtctcaaactcctg	11	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8158779	A	A	8158779	1	1	54	0	1	0	0	0	0	0	0	0	13463	841	29	3		3	RIC3	11	8158779	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	71004	8158779	126847737	2675	59269											
USP47	55031	broad.mit.edu	37	chr11	11959973	11959973	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagagcctgctatgtacaaGacacactatgtgacagttat	9	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11959973	A	A	11959973	1	1	54	0	1	0	0	0	0	0	0	0	17205	957	33	4		4	USP47	11	11959973	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3801194	11959973	123046543	2676	59270											
TEAD1	7003	broad.mit.edu	37	chr11	12835807	12835807	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggggagttcaagcgagcctCtgtcctcagtgatggagtcc	14	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12835807	T	T	12835807	1	4	54	0	1	0	0	0	0	0	0	0	15860	928	32	4		4	TEAD1	11	12835807	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	875834	12835807	122170709	2677	59271											
ARNTL	406	broad.mit.edu	37	chr11	13329083	13329083	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggagaagggggtcttatgGaggattccccactgccacca	13	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13329083	T	T	13329083	1	4	54	0	1	0	0	0	0	0	0	0	971	1189	41	3		3	ARNTL	11	13329083	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	493276	13329083	121677433	2678	59272											
ARNTL	406	broad.mit.edu	37	chr11	13341592	13341592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatagatttctcacaggaGtgctaacatttaggctcatg	8	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13341592	T	T	13341592	1	4	54	0	1	0	0	0	0	0	0	0	971	1044	36	3		3	ARNTL	11	13341592	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12509	13341592	121664924	2679	59273											
SPON1	10418	broad.mit.edu	37	chr11	13984196	13984196	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatctgggcaaaatcagccCtccctcctcccgctccttcg	8	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13984196	T	T	13984196	1	4	54	0	1	0	0	0	0	0	0	0	15200	696	24	4		4	SPON1	11	13984196	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	642604	13984196	121022320	2680	59274											
SPON1	10418	broad.mit.edu	37	chr11	14063673	14063673	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatggccctctggtgccacTtcctatctggcctcctgacc	8	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14063673	A	A	14063673	1	1	54	0	1	0	0	0	0	0	0	0	15200	1624	56	5		5	SPON1	11	14063673	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	79477	14063673	120942843	2681	59275											
PDE3B	5140	broad.mit.edu	37	chr11	14803502	14803502	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttaagctgataagcaacttCagcaaagtctcaggatacaa	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14803502	G	G	14803502	1	3	54	0	1	0	0	0	0	0	0	0	11732	841	29	4		4	PDE3B	11	14803502	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	739829	14803502	120203014	2682	59276											
SOX6	55553	broad.mit.edu	37	chr11	16398355	16398355	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactatagatagaacatttAgacttcagaactgacaagcg	8	8	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16398355	G	G	16398355	1	3	54	0	1	0	0	0	0	0	0	0	15069	435	15	5		5	SOX6	11	16398355	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1594853	16398355	118608161	2683	59277											
SOX6	55553	broad.mit.edu	37	chr11	16407940	16407940	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgaaacataaaatctaatCatgtcaatatcctacttaaa	2	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16407940	A	A	16407940	1	1	54	0	1	0	0	0	0	0	0	0	15069	841	29	3		3	SOX6	11	16407940	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9585	16407940	118598576	2684	59278											
PLEKHA7	144100	broad.mit.edu	37	chr11	16892603	16892603	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagcaaatgcctttagtctCccatactctgcccagataag	6	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16892603	T	T	16892603	1	4	54	0	1	0	0	0	0	0	0	0	12156	870	30	4		4	PLEKHA7	11	16892603	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	484663	16892603	118113913	2685	59279											
ABCC8	6833	broad.mit.edu	37	chr11	17418608	17418608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgctgggggccgggctGggctcagccaccaggcatgg	19	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17418608	T	T	17418608	1	4	54	0	1	0	0	0	0	0	0	0	58	1363	47	2		2	ABCC8	11	17418608	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	526005	17418608	117587908	2686	59280											
ABCC8	6833	broad.mit.edu	37	chr11	17483340	17483340	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaggtcctcgggaggcttCacctccctcggtgtcttgaa	12	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17483340	T	T	17483340	2	4	54	1	0	0	0	0	0	0	0	1	58	813	29	4		4	ABCC8	11	17483340	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	64732	17483340	117523176	2687	59281											
MYOD1	4654	broad.mit.edu	37	chr11	17743079	17743079	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggtggccgcccacccgcCcgagggatggtgcccctagg	16	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17743079	T	T	17743079	1	4	54	0	1	0	0	0	0	0	0	0	10182	638	22	4		4	MYOD1	11	17743079	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	259739	17743079	117263437	2688	59282											
IGSF22	283284	broad.mit.edu	37	chr11	18732226	18732226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggggtccttgttgactgGcacccacaggttgctgcctt	13	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18732226	T	T	18732226	3	4	54	1	0	0	0	0	1	0	0	0	7670	1203	42	3	1464	3	IGSF22	11	18732226	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	989147	18732226	116274290	2689	59283											
PTPN5	84867	broad.mit.edu	37	chr11	18762430	18762430	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggaaaatgagggagggaGagatcagctgggaacagggt	19	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18762430	T	T	18762430	1	4	54	0	1	0	0	0	0	0	0	0	12899	957	33	3		3	PTPN5	11	18762430	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	30204	18762430	116244086	2690	59284											
MRGPRX2	117194	broad.mit.edu	37	chr11	19077787	19077787	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcgcatgcggaagcccaGgagccagagcacaaacccgt	12	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19077787	A	A	19077787	2	1	54	1	0	0	0	0	0	0	0	1	9861	991	35	4		4	MRGPRX2	11	19077787	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	315357	19077787	115928729	2691	59285											
SLC6A5	9152	broad.mit.edu	37	chr11	20629214	20629214	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaggtaagtttggaaataCctgctttaggtgtgtgtatt	11	3	0	0	rs141671283	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20629214	T	T	20629214	1	4	54	0	1	0	0	0	0	0	0	0	14801	522	18	4		4	SLC6A5	11	20629214	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1551427	20629214	114377302	2692	59286											
SLC6A5	9152	broad.mit.edu	37	chr11	20652351	20652351	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcaacattgagaatgtGgcagaccaaggtacaggaca	11	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20652351	C	C	20652351	2	2	54	1	0	0	0	0	0	0	0	1	14801	1335	47	4		4	SLC6A5	11	20652351	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23137	20652351	114354165	2693	59287											
NELL1	4745	broad.mit.edu	37	chr11	20757995	20757995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagttaggcatttagccCagcgtcaaagctggcccctg	10	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20757995	A	A	20757995	1	1	54	0	1	0	0	0	0	0	0	0	10428	609	21	2		2	NELL1	11	20757995	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	105644	20757995	114248521	2694	59288											
NELL1	4745	broad.mit.edu	37	chr11	21422289	21422289	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttcagtttcacgaatacGtcaccctttggcataattca	5	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21422289	A	A	21422289	1	1	54	0	1	0	0	0	0	0	0	0	10428	1160	40	4		4	NELL1	11	21422289	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	664294	21422289	113584227	2695	59289											
ANO5	203859	broad.mit.edu	37	chr11	22232823	22232823	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgttagcagagcctgagcaGcagagagaccagctttctca	11	11	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22232823	C	C	22232823	3	2	54	1	0	0	0	0	1	0	0	0	700	971	34	4	111	4	ANO5	11	22232823	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	810534	22232823	112773693	2696	59290											
FANCF	2188	broad.mit.edu	37	chr11	22647320	22647320	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttgagaccgccagaagctCggaaaagcgatccaggtgct	13	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22647320	A	A	22647320	4	1	54	1	0	0	0	0	0	1	0	0	5724	893	31	3	1091	3	FANCF	11	22647320	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	414497	22647320	112359196	2697	59291											
GAS2	2620	broad.mit.edu	37	chr11	22827408	22827408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatagggtaacttcctgatGttgccatggcatctgtaaaa	9	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22827408	T	T	22827408	1	4	54	0	1	0	0	0	0	0	0	0	6307	1392	48	3		3	GAS2	11	22827408	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	180088	22827408	112179108	2698	59292											
LUZP2	338645	broad.mit.edu	37	chr11	25004696	25004696	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagatgaaagcaatgaaaGagactgtgcagctctgcttg	11	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25004696	A	A	25004696	3	1	54	1	0	0	0	0	1	0	0	0	9174	943	33	4	656	4	LUZP2	11	25004696	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2177288	25004696	110001820	2699	59293											
LUZP2	338645	broad.mit.edu	37	chr11	25030049	25030049	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgaataagggcctatcacgGctcatttggttcctccattt	9	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25030049	C	C	25030049	1	2	54	0	1	0	0	0	0	0	0	0	9174	1218	42	4		4	LUZP2	11	25030049	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	25353	25030049	109976467	2700	59294											
ANO3	63982	broad.mit.edu	37	chr11	26463847	26463847	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctcttccttgccttgaaGgtggccaatcccatggagtc	9	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26463847	A	A	26463847	1	1	54	0	1	0	0	0	0	0	0	0	698	1015	35	4		4	ANO3	11	26463847	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1433798	26463847	108542669	2701	59295											
ANO3	63982	broad.mit.edu	37	chr11	26465275	26465275	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgttgttatgcttttAtttcccaaaactacaaagta	4	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26465275	G	G	26465275	1	3	54	0	1	0	0	0	0	0	0	0	698	464	16	5		5	ANO3	11	26465275	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1428	26465275	108541241	2702	59296											
ANO3	63982	broad.mit.edu	37	chr11	26663424	26663424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagagctcaaaagtccttGgtctgctctgtgatgtaggt	11	8	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26663424	T	T	26663424	1	4	54	0	1	0	0	0	0	0	0	0	698	1363	47	2		2	ANO3	11	26663424	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	198149	26663424	108343092	2703	59297											
SLC5A12	159963	broad.mit.edu	37	chr11	26732956	26732956	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagaaagggacatagaaagGaaaactgcctagaaagttct	11	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26732956	T	T	26732956	1	4	54	0	1	0	0	0	0	0	0	0	14778	1189	41	3		3	SLC5A12	11	26732956	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	69532	26732956	108273560	2704	59298											
METT5D1	196074	broad.mit.edu	37	chr11	28179447	28179447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagttctgcacaataccgaGgcaccacctgaaagtagaca	8	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28179447	T	T	28179447	1	4	54	0	1	0	0	0	0	0	0	0	9585	1015	35	2		2	METT5D1	11	28179447	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1446491	28179447	106827069	2705	59299											
FSHB	2488	broad.mit.edu	37	chr11	30255431	30255431	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgcaatgtgcccaGgggacaaaccactggatcag	14	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30255431	T	T	30255431	1	4	54	0	1	0	0	0	0	0	0	0	6132	1015	35	2		2	FSHB	11	30255431	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2075984	30255431	104751085	2706	59300											
MPPED2	744	broad.mit.edu	37	chr11	30410206	30410206	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcactggccccacctcccCagtctgtttcctcttccagc	6	19	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30410206	A	A	30410206	1	1	54	0	1	0	0	0	0	0	0	0	9836	609	21	2		2	MPPED2	11	30410206	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	154775	30410206	104596310	2707	59301											
MPPED2	744	broad.mit.edu	37	chr11	30435856	30435856	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctccacacagcccactcTttgaagctcctttggaaccc	6	17	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30435856	A	A	30435856	4	1	54	1	0	0	0	0	0	1	0	0	9836	1617	56	5	279	5	MPPED2	11	30435856	Nonsense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	25650	30435856	104570660	2708	59302											
MPPED2	744	broad.mit.edu	37	chr11	30561881	30561881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctggctctgaaatccaCtccacaacttattaacatgc	5	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30561881	A	A	30561881	1	1	54	0	1	0	0	0	0	0	0	0	9836	580	20	3		3	MPPED2	11	30561881	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	126025	30561881	104444635	2709	59303											
DCDC1	341019	broad.mit.edu	37	chr11	31327812	31327812	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtacagtaactctggcaaaGactgttctagatccattttt	8	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31327812	T	T	31327812	2	4	54	1	0	0	0	0	0	0	0	1	4317	929	33	3		3	DCDC1	11	31327812	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	765931	31327812	103678704	2710	59304											
RCN1	5954	broad.mit.edu	37	chr11	31896150	31896150	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgagatggtttctcagtGcaaaggggcagctgaggaca	14	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31896150	C	C	31896150	1	2	54	0	1	0	0	0	0	0	0	0	13287	1334	46	4		4	RCN1	11	31896150	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	568338	31896150	103110366	2711	59305											
C11orf41	25758	broad.mit.edu	37	chr11	33667227	33667227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgggctttgtttcctccCacagactgagcctgaaatca	8	12	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33667227	A	A	33667227	1	1	54	0	1	0	0	0	0	0	0	0	1652	609	21	2		2	C11orf41	11	33667227	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1771077	33667227	101339289	2712	59306											
C11orf41	25758	broad.mit.edu	37	chr11	33682438	33682438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagcagtgttcgccatcCcagctgccaacagacctggc	10	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33682438	A	A	33682438	3	1	54	1	0	0	0	0	1	0	0	0	1652	623	22	2	5238	2	C11orf41	11	33682438	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	15211	33682438	101324078	2713	59307											
APIP	51074	broad.mit.edu	37	chr11	34922278	34922278	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaactccattcctactagGaaaggaagcagttctggtag	11	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34922278	T	T	34922278	1	4	54	0	1	0	0	0	0	0	0	0	776	1189	41	3		3	APIP	11	34922278	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1239840	34922278	100084238	2714	59308											
SLC1A2	6506	broad.mit.edu	37	chr11	35411923	35411923	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaccctgatagtttctattCtcctccatttcatttttaaa	3	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35411923	T	T	35411923	1	4	54	0	1	0	0	0	0	0	0	0	14545	928	32	4		4	SLC1A2	11	35411923	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	489645	35411923	99594593	2715	59309											
PAMR1	25891	broad.mit.edu	37	chr11	35462916	35462916	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatatatggtttcagaaaGgacttaaaagagaaaggcat	11	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35462916	A	A	35462916	1	1	54	0	1	0	0	0	0	0	0	0	11507	1015	35	4		4	PAMR1	11	35462916	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	50993	35462916	99543600	2716	59310											
C11orf74	119710	broad.mit.edu	37	chr11	36680755	36680755	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattcacagaggcattttgtGtgtgtgtgcttattttaatt	10	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36680755	A	A	36680755	1	1	54	0	1	0	0	0	0	0	0	0	1674	1392	48	4		4	C11orf74	11	36680755	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1217839	36680755	98325761	2717	59311											
LRRC4C	57689	broad.mit.edu	37	chr11	40136407	40136408	+	Frame_Shift_Ins	INS	-	T	T													ctcccagtcgaccactggagINStgggacccacattgttatct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40136408	T	T	40136407	7	5	54	1	0	1	1	0	0	0	0	0	9095	1029	36	0	490	0	LRRC4C	11	40136407	Frame_Shift_Ins	INS	-	TCGA-17-Z022-01A-01W-0746-08	3455652	40136407	94870109	2718	59312											
LRRC4C	57689	broad.mit.edu	37	chr11	40172506	40172506	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaataaaaaaaaatgccatCtgccaactaccagtgcaact	5	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40172506	T	T	40172506	1	4	54	0	1	0	0	0	0	0	0	0	9095	928	32	4		4	LRRC4C	11	40172506	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	36099	40172506	94834010	2719	59313											
LRRC4C	57689	broad.mit.edu	37	chr11	40373735	40373735	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctttccttcctttccttCcttacttccttcgaaggtgt	4	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40373735	A	A	40373735	1	1	54	0	1	0	0	0	0	0	0	0	9095	870	30	3		3	LRRC4C	11	40373735	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	201229	40373735	94632781	2720	59314											
LRRC4C	57689	broad.mit.edu	37	chr11	40612818	40612818	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatccgtcacccctttcttTgactaggaaagggaactccc	7	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40612818	A	A	40612818	1	1	54	0	1	0	0	0	0	0	0	0	9095	1827	63	5		5	LRRC4C	11	40612818	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	239083	40612818	94393698	2721	59315											
LRRC4C	57689	broad.mit.edu	37	chr11	41070552	41070552	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagtttgaagagttaggcaGgtactaggtatgtagagctt	14	3	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41070552	C	C	41070552	1	2	54	0	1	0	0	0	0	0	0	0	9095	1015	35	4		4	LRRC4C	11	41070552	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	457734	41070552	93935964	2722	59316											
LRRC4C	57689	broad.mit.edu	37	chr11	41304951	41304951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttactaggtggtgaataatGcatggattagtctaataaag	11	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41304951	T	T	41304951	1	4	54	0	1	0	0	0	0	0	0	0	9095	1334	46	3		3	LRRC4C	11	41304951	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	234399	41304951	93701565	2723	59317											
LRRC4C	57689	broad.mit.edu	37	chr11	41418743	41418743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacaacacagtttgaactGtgcaggtccacttatacaca	6	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41418743	T	T	41418743	1	4	54	0	1	0	0	0	0	0	0	0	9095	1392	48	3		3	LRRC4C	11	41418743	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	113792	41418743	93587773	2724	59318											
LRRC4C	57689	broad.mit.edu	37	chr11	41450648	41450648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggcagttaccctcatGctgttctcttgatagagaat	11	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41450648	T	T	41450648	1	4	54	0	1	0	0	0	0	0	0	0	9095	1334	46	3		3	LRRC4C	11	41450648	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31905	41450648	93555868	2725	59319											
ACCS	84680	broad.mit.edu	37	chr11	44092856	44092856	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaactctgctttgacctgctGtcctggcgggtaagtcctag	11	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44092856	C	C	44092856	2	2	54	1	0	0	0	0	0	0	0	1	133	1364	48	4		4	ACCS	11	44092856	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2642208	44092856	90913660	2726	59320											
TP53I11	9537	broad.mit.edu	37	chr11	44958879	44958879	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcaatgccggagaagagCacagcagagacgaactgcca	13	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44958879	A	A	44958879	2	1	54	1	0	0	0	0	0	0	0	1	16509	697	25	3		3	TP53I11	11	44958879	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	866023	44958879	90047637	2727	59321											
PRDM11	56981	broad.mit.edu	37	chr11	45117410	45117410	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcgtggagtgccgggcCtgcctgagatgctcacctct	13	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45117410	A	A	45117410	2	1	54	1	0	0	0	0	0	0	0	1	12558	668	24	2		2	PRDM11	11	45117410	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	158531	45117410	89889106	2728	59322											
SYT13	57586	broad.mit.edu	37	chr11	45265684	45265684	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggctgcgctcagagccCgaggtgtgcaggcccaggct	16	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45265684	A	A	45265684	2	1	54	1	0	0	0	0	0	0	0	1	15588	639	23	1		1	SYT13	11	45265684	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	148274	45265684	89740832	2729	59323											
SYT13	57586	broad.mit.edu	37	chr11	45274052	45274052	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcccaggcggagctcccCggccacgctgtgacgggaga	16	15	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45274052	T	T	45274052	3	4	54	1	0	0	0	0	1	0	0	0	15588	652	23	4	526	4	SYT13	11	45274052	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8368	45274052	89732464	2730	59324											
AMBRA1	55626	broad.mit.edu	37	chr11	46450204	46450204	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaatcctctccaatttTactgaggtggctgaccacgt	8	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46450204	C	C	46450204	1	2	54	0	1	0	0	0	0	0	0	0	565	1769	61	5		5	AMBRA1	11	46450204	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1176152	46450204	88556312	2731	59325											
OR4C13	283092	broad.mit.edu	37	chr11	49974755	49974755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtacatgagacctccaGctactttacccattgataaa	6	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49974755	T	T	49974755	3	4	54	1	0	0	0	0	1	0	0	0	11141	971	34	3	783	3	OR4C13	11	49974755	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3524551	49974755	85031761	2732	59326											
OR4C46	119749	broad.mit.edu	37	chr11	51515606	51515606	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacatttcttcggaggtgcaGagggcatcctacttactgtg	11	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51515606	T	T	51515606	4	4	54	1	0	0	0	0	0	1	0	0	11145	943	33	3	327	3	OR4C46	11	51515606	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1540851	51515606	83490910	2733	59327											
OR4C15	81309	broad.mit.edu	37	chr11	55322043	55322043	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtatttttgtttgtctaCattgcaactgttgggggcaa	11	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55322043	A	A	55322043	4	1	54	1	0	0	0	0	0	1	0	0	11142	489	17	3	263	3	OR4C15	11	55322043	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3806437	55322043	79684473	2734	59328											
OR4S2	219431	broad.mit.edu	37	chr11	55418786	55418786	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatatgaccatcatgaaccGggagacatgcaataaaatgt	8	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55418786	A	A	55418786	3	1	54	1	0	0	0	0	1	0	0	0	11177	1116	39	4	409	4	OR4S2	11	55418786	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96743	55418786	79587730	2735	59329											
OR5D18	219438	broad.mit.edu	37	chr11	55587546	55587546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcgtgctgctggttgtGggatcctatgcctggggagt	16	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587546	T	T	55587546	2	4	54	1	0	0	0	0	0	0	0	1	11251	1335	47	2		2	OR5D18	11	55587546	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	168760	55587546	79418970	2736	59330											
OR5L2	26338	broad.mit.edu	37	chr11	55595459	55595459	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgtctcccatggaacaatCctttacatttattgcaggcc	6	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595459	A	A	55595459	2	1	54	1	0	0	0	0	0	0	0	1	11265	845	30	3		3	OR5L2	11	55595459	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7913	55595459	79411057	2737	59331											
SPRYD5	84767	broad.mit.edu	37	chr11	55653042	55653042	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctcaactggcaagacacGgcagttcttgctcagtgctc	9	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55653042	A	A	55653042	2	1	54	1	0	0	0	0	0	0	0	1	15229	1103	39	4		4	SPRYD5	11	55653042	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	57583	55653042	79353474	2738	59332											
OR5I1	10798	broad.mit.edu	37	chr11	55703457	55703457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaccgcatacagatgccCctagacatcacaactgtgta	6	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55703457	A	A	55703457	3	1	54	1	0	0	0	0	1	0	0	0	11258	622	22	2	527	2	OR5I1	11	55703457	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	50415	55703457	79303059	2739	59333											
OR8I2	120586	broad.mit.edu	37	chr11	55861152	55861152	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatggcctacaatcgctaCatagcaatctgcaatccctt	5	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55861152	A	A	55861152	4	1	54	1	0	0	0	0	0	1	0	0	11334	489	17	3	371	3	OR8I2	11	55861152	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	157695	55861152	79145364	2740	59334											
OR8I2	120586	broad.mit.edu	37	chr11	55861616	55861616	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcatctgtattctataCgattgtcattcccatgctga	9	9	3	1	rs140206966	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55861616	T	T	55861616	3	4	54	1	0	0	0	0	1	0	0	0	11334	536	19	4	835	4	OR8I2	11	55861616	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	464	55861616	79144900	2741	59335											
OR8K1	390157	broad.mit.edu	37	chr11	56113904	56113904	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcctatgatcgctacgtAgccatctgtaaacctcttct	7	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56113904	T	T	56113904	2	4	54	1	0	0	0	0	0	0	0	1	11337	407	15	5		5	OR8K1	11	56113904	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	252288	56113904	78892612	2742	59336											
OR5R1	219479	broad.mit.edu	37	chr11	56185018	56185018	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctttgtgttgcccctgagTagagcggatccttaggatag	14	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56185018	A	A	56185018	3	1	54	1	0	0	0	0	1	0	0	0	11274	1638	57	5	285	5	OR5R1	11	56185018	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	71114	56185018	78821498	2743	59337											
OR5M3	219482	broad.mit.edu	37	chr11	56237710	56237710	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccagcataagtaattgtTtttttatctgataacaggtt	6	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56237710	C	C	56237710	2	2	54	1	0	0	0	0	0	0	0	1	11269	1838	64	5		5	OR5M3	11	56237710	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	52692	56237710	78768806	2744	59338											
OR5M11	219487	broad.mit.edu	37	chr11	56310241	56310241	+	Frame_Shift_Del	DEL	G	-	-													actggatctacagaaggtcaGgcggaaggtcaggatggcct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56310241	-	-	56310241	7	5	54	1	0	1	0	1	0	0	0	0	11268	991	35	0	427	0	OR5M11	11	56310241	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	72531	56310241	78696275	2745	59339											
OR5M1	390168	broad.mit.edu	37	chr11	56380351	56380351	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaagaatgatgaagagagAgcttgagagattaaagcctg	13	4	0	8			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56380351	C	C	56380351	3	2	54	1	0	0	0	0	1	0	0	0	11266	304	11	5	323	5	OR5M1	11	56380351	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	70110	56380351	78626165	2746	59340											
PRG2	5553	broad.mit.edu	37	chr11	57155006	57155006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggctcgacgccagtggcctCctgtgaaggcagaacagaaa	14	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57155006	A	A	57155006	3	1	54	1	0	0	0	0	1	0	0	0	12585	869	30	3	61	3	PRG2	11	57155006	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	774655	57155006	77851510	2747	59341											
OR1S2	219958	broad.mit.edu	37	chr11	57971443	57971443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaggaagagatacatggGggtgtgaaggtatatatcca	15	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57971443	T	T	57971443	3	4	54	1	0	0	0	0	1	0	0	0	11067	1232	43	2	769	2	OR1S2	11	57971443	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	816437	57971443	77035073	2748	59342											
OR10Q1	219960	broad.mit.edu	37	chr11	57995401	57995401	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagccttcagttggcgtcaGaggctgctttacggataatg	12	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995401	T	T	57995401	3	4	54	1	0	0	0	0	1	0	0	0	11010	942	33	3	16	3	OR10Q1	11	57995401	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23958	57995401	77011115	2749	59343											
GLYATL2	219970	broad.mit.edu	37	chr11	58606969	58606969	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatctgtcctcctctcaactCaaccctctctctcctttgat	2	17	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58606969	T	T	58606969	1	4	54	0	1	0	0	0	0	0	0	0	6545	841	29	4		4	GLYATL2	11	58606969	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	611568	58606969	76399547	2750	59344											
GLYATL2	219970	broad.mit.edu	37	chr11	58607111	58607111	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcacttcagcttctttcCctcaagaagatgatctaagg	8	10	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58607111	T	T	58607111	1	4	54	0	1	0	0	0	0	0	0	0	6545	638	22	4		4	GLYATL2	11	58607111	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	142	58607111	76399405	2751	59345											
OR5A1	219982	broad.mit.edu	37	chr11	59210886	59210886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactcttctgctgtggctcCcaatatgctcactgacttct	6	14	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59210886	A	A	59210886	3	1	54	1	0	0	0	0	1	0	0	0	11233	623	22	2	247	2	OR5A1	11	59210886	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	603775	59210886	75795630	2752	59346											
OR4D9	390199	broad.mit.edu	37	chr11	59282863	59282863	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccactccatagcgcagAtttctctattgctcccactc	5	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59282863	T	T	59282863	3	4	54	1	0	0	0	0	1	0	0	0	11153	333	12	5	480	5	OR4D9	11	59282863	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	71977	59282863	75723653	2753	59347											
MS4A3	932	broad.mit.edu	37	chr11	59830233	59830233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaattagagacgataaaCtcttttttattttttaattt	3	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59830233	A	A	59830233	1	1	54	0	1	0	0	0	0	0	0	0	9955	580	20	3		3	MS4A3	11	59830233	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	547370	59830233	75176283	2754	59348											
MS4A14	84689	broad.mit.edu	37	chr11	60167844	60167844	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaggtggtcaaacacatcaCctgttaacttttgtctcttg	7	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60167844	G	G	60167844	1	3	54	0	1	0	0	0	0	0	0	0	9952	522	18	4		4	MS4A14	11	60167844	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	337611	60167844	74838672	2755	59349											
MS4A8B	83661	broad.mit.edu	37	chr11	60473960	60473961	+	Intron	DNP	GC	TT	TT													ctaaaagcagcagagaagacGctggtaaccccttccttctc					rs142724372	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	60473961	TT	TT	60473960	1	4	54	0	1	0	0	0	0	0	0	0	9961	1102	38	3		3	MS4A8B	11	60473960	Intron	DNP	GC	TCGA-17-Z022-01A-01W-0746-08	306116	60473960	74532556	2756	59350											
SLC15A3	51296	broad.mit.edu	37	chr11	60709176	60709176	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaggcagagatctaggtatCtaagggtcccagagaaagag	13	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60709176	G	G	60709176	1	3	54	0	1	0	0	0	0	0	0	0	14513	928	32	4		4	SLC15A3	11	60709176	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	235216	60709176	74297340	2757	59351											
CD6	923	broad.mit.edu	37	chr11	60777058	60777058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagagcaccagtcctggCgcctgacagggggcgctgac	15	14	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60777058	A	A	60777058	3	1	54	1	0	0	0	0	1	0	0	0	3058	768	27	3	814	3	CD6	11	60777058	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	67882	60777058	74229458	2758	59352											
C11orf66	220004	broad.mit.edu	37	chr11	61250202	61250202	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtgcctgacggcaagcaTcccctgccctggagcatgcg	14	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61250202	G	G	61250202	3	3	54	1	0	0	0	0	1	0	0	0	1668	1432	50	5	313	5	C11orf66	11	61250202	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	473144	61250202	73756314	2759	59353											
DAGLA	747	broad.mit.edu	37	chr11	61510957	61510957	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggagctggggttcagtcccCtctcccttctgagtcttata	11	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61510957	G	G	61510957	1	3	54	0	1	0	0	0	0	0	0	0	4259	696	24	4		4	DAGLA	11	61510957	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	260755	61510957	73495559	2760	59354											
CHRM1	1128	broad.mit.edu	37	chr11	62678649	62678649	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcaggggaaagtcatcAcctgaaaagagaggacatgg	12	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62678649	T	T	62678649	1	4	54	0	1	0	0	0	0	0	0	0	3407	173	6	5		5	CHRM1	11	62678649	5'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1167692	62678649	72327867	2761	59355											
SLC22A25	387601	broad.mit.edu	37	chr11	62965730	62965730	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattataaatcatgctgctaTaaagacacatgcacacatat	5	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62965730	C	C	62965730	1	2	54	0	1	0	0	0	0	0	0	0	14568	1421	49	5		5	SLC22A25	11	62965730	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	287081	62965730	72040786	2762	59356											
SLC22A10	387775	broad.mit.edu	37	chr11	63080833	63080833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagagggtcccacgccCacggaatctcactgattgct	11	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63080833	A	A	63080833	1	1	54	0	1	0	0	0	0	0	0	0	14554	609	21	2		2	SLC22A10	11	63080833	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	115103	63080833	71925683	2763	59357											
MARK2	2011	broad.mit.edu	37	chr11	63670795	63670795	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccctcccctattccacgCcattgcctcctccccatctt	2	22	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63670795	T	T	63670795	1	4	54	0	1	0	0	0	0	0	0	0	9405	754	26	4		4	MARK2	11	63670795	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	589962	63670795	71335721	2764	59358											
SLC22A11	55867	broad.mit.edu	37	chr11	64326572	64326572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccctgtgatttcatacCccccgagctgagccactgca	8	17	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64326572	A	A	64326572	1	1	54	0	1	0	0	0	0	0	0	0	14555	638	22	2		2	SLC22A11	11	64326572	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	655777	64326572	70679944	2765	59359											
MAP4K2	5871	broad.mit.edu	37	chr11	64557476	64557476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcacccatcttggcacCccctcagccacgcctgagcc	7	22	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64557476	A	A	64557476	1	1	54	0	1	0	0	0	0	0	0	0	9352	638	22	2		2	MAP4K2	11	64557476	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	230904	64557476	70449040	2766	59360											
MEN1	4221	broad.mit.edu	37	chr11	64575497	64575497	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctcagacagggcgaggtGgacatcccggagacccaggg	15	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64575497	A	A	64575497	3	1	54	1	0	0	0	0	1	0	0	0	9565	1348	47	4	1344	4	MEN1	11	64575497	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	18021	64575497	70431019	2767	59361											
SLC25A45	283130	broad.mit.edu	37	chr11	65149314	65149315	+	Intron	INS	-	T	T													tttggtctctgctcctcccaINStgtcacccatcttcccgagg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65149315	T	T	65149314	6	5	54	0	1	1	1	0	0	0	0	0	14624	232	8	0		0	SLC25A45	11	65149314	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	573817	65149314	69857202	2768	59362											
BRMS1	25855	broad.mit.edu	37	chr11	66105607	66105607	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaactttcttgagccactgAttctgacacagtcacagcct	6	13	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66105607	T	T	66105607	1	4	54	0	1	0	0	0	0	0	0	0	1525	348	12	5		5	BRMS1	11	66105607	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	956293	66105607	68900909	2769	59363											
ACTN3	89	broad.mit.edu	37	chr11	66323749	66323750	+	Intron	INS	-	A	A													gcttgtggacccaagggcccINSaaccttggctgtagtccaac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66323750	A	A	66323749	6	5	54	0	1	1	1	0	0	0	0	0	206	609	21	0		0	ACTN3	11	66323749	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	218142	66323749	68682767	2770	59364											
PC	5091	broad.mit.edu	37	chr11	66617697	66617697	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgggccgggctcaccttgatGagatcgcccagcatctggtt	13	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66617697	C	C	66617697	2	2	54	1	0	0	0	0	0	0	0	1	11591	1277	45	4		4	PC	11	66617697	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	293948	66617697	68388819	2771	59365											
TBX10	347853	broad.mit.edu	37	chr11	67400440	67400440	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtggttctgataggctgtCactgctgtgaactgggtctc	13	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67400440	T	T	67400440	2	4	54	1	0	0	0	0	0	0	0	1	15773	813	29	4		4	TBX10	11	67400440	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	782743	67400440	67606076	2772	59366											
LRP5	4041	broad.mit.edu	37	chr11	68181230	68181230	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtacagcgattatatctaCtggacagactggaatctgca	9	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68181230	G	G	68181230	4	3	54	1	0	0	0	0	0	1	0	0	9047	576	20	4	2623	4	LRP5	11	68181230	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	780790	68181230	66825286	2773	59367											
CPT1A	1374	broad.mit.edu	37	chr11	68552376	68552376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctgctgctccatctccCggggcttcagcagccgccca	10	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68552376	A	A	68552376	3	1	54	1	0	0	0	0	1	0	0	0	3863	652	23	1	1331	1	CPT1A	11	68552376	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	371146	68552376	66454140	2774	59368											
IGHMBP2	3508	broad.mit.edu	37	chr11	68704073	68704073	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggcctctgaagctccatctCagcccagcctcaacggaggc	10	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68704073	G	G	68704073	3	3	54	1	0	0	0	0	1	0	0	0	7661	827	29	4	2175	4	IGHMBP2	11	68704073	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	151697	68704073	66302443	2775	59369											
SHANK2	22941	broad.mit.edu	37	chr11	70507701	70507701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagagcggctgctcttacCtttggcccctcgaagcacga	10	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70507701	A	A	70507701	3	1	54	1	0	0	0	0	1	0	0	0	14378	695	24	2	3657	2	SHANK2	11	70507701	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1803628	70507701	64498815	2776	59370											
NADSYN1	55191	broad.mit.edu	37	chr11	71184605	71184605	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgttctcttcacctgcctCtgcctgcagcccgcacatcg	7	19	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71184605	G	G	71184605	1	3	54	0	1	0	0	0	0	0	0	0	10232	928	32	4		4	NADSYN1	11	71184605	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	676904	71184605	63821911	2777	59371											
C11orf59	55004	broad.mit.edu	37	chr11	71809096	71809096	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggcaaagagaaagacaGggatgggagagacagaagga	18	3	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71809096	C	C	71809096	1	2	54	0	1	0	0	0	0	0	0	0	1664	1015	35	4		4	C11orf59	11	71809096	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	624491	71809096	63197420	2778	59372											
PDE2A	5138	broad.mit.edu	37	chr11	72290462	72290462	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgtcatgccctcctacTggacacccccacccatttgc	9	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72290462	G	G	72290462	1	3	54	0	1	0	0	0	0	0	0	0	11730	1595	55	5		5	PDE2A	11	72290462	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	481366	72290462	62716054	2779	59373											
XRRA1	143570	broad.mit.edu	37	chr11	74629939	74629939	+	Intron	SNP	G	C	C													ccatggtaactgcgttggcaGagattccagccttggttgag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74629939	C	C	74629939	1	2	54	0	1	0	0	0	0	0	0	0	17588	957	33	4		4	XRRA1	11	74629939	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2339477	74629939	60376577	2780	59374	279	2									
XRRA1	143570	broad.mit.edu	37	chr11	74629944	74629944	+	Intron	SNP	T	C	C													gtaactgcgttggcagagatTccagccttggttgaggcatc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74629944	C	C	74629944	1	2	54	0	1	0	0	0	0	0	0	0	17588	1798	62	5		5	XRRA1	11	74629944	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5	74629944	60376572	2781	59375	279	2									
SLCO2B1	11309	broad.mit.edu	37	chr11	74880372	74880372	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagaccctgctgggcgtGggcggggtgcccattcagcc	16	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74880372	A	A	74880372	2	1	54	1	0	0	0	0	0	0	0	1	14841	1335	47	4		4	SLCO2B1	11	74880372	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	250428	74880372	60126144	2782	59376											
SERPINH1	871	broad.mit.edu	37	chr11	75283547	75283547	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccagctctatcccaacctctCccaactataaaactaggtgc	4	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75283547	G	G	75283547	1	3	54	0	1	0	0	0	0	0	0	0	14230	870	30	4		4	SERPINH1	11	75283547	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	403175	75283547	59722969	2783	59377											
UVRAG	7405	broad.mit.edu	37	chr11	75723452	75723452	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagtgataaacctaaggtTattcctggtctgcctgattc	8	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75723452	A	A	75723452	1	1	54	0	1	0	0	0	0	0	0	0	17235	1769	61	5		5	UVRAG	11	75723452	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	439905	75723452	59283064	2784	59378											
C11orf30	56946	broad.mit.edu	37	chr11	76197470	76197470	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgctttcttgaacagcatActaacagcagtgaacagagg	9	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76197470	T	T	76197470	1	4	54	0	1	0	0	0	0	0	0	0	1648	406	14	5		5	C11orf30	11	76197470	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	474018	76197470	58809046	2785	59379											
ACER3	55331	broad.mit.edu	37	chr11	76624646	76624646	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgggtaggaagaatcaaTatcgtgaaaatggccatact	10	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76624646	G	G	76624646	1	3	54	0	1	0	0	0	0	0	0	0	140	1421	49	5		5	ACER3	11	76624646	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	427176	76624646	58381870	2786	59380											
CAPN5	726	broad.mit.edu	37	chr11	76830158	76830158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtctacgcgccgggaggGcaagggtgagaacctggcca	18	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76830158	T	T	76830158	3	4	54	1	0	0	0	0	1	0	0	0	2655	1203	42	3	1280	3	CAPN5	11	76830158	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	205512	76830158	58176358	2787	59381											
MYO7A	4647	broad.mit.edu	37	chr11	76916516	76916516	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctgcaggtacagcgaGgagcggggttgggagctgct	17	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76916516	A	A	76916516	2	1	54	1	0	0	0	0	0	0	0	1	10176	991	35	4		4	MYO7A	11	76916516	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	86358	76916516	58090000	2788	59382											
CLNS1A	1207	broad.mit.edu	37	chr11	77333672	77333672	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgttagatgggataaTccttcttcataggtgtaaaa	9	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77333672	C	C	77333672	2	2	54	1	0	0	0	0	0	0	0	1	3580	1422	50	5		5	CLNS1A	11	77333672	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	417156	77333672	57672844	2789	59383											
RSF1	51773	broad.mit.edu	37	chr11	77524757	77524757	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctgaccgacttgttcctCggcgagagcgaacagtagtg	12	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77524757	A	A	77524757	1	1	54	0	1	0	0	0	0	0	0	0	13810	899	31	3		3	RSF1	11	77524757	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	191085	77524757	57481759	2790	59384											
ODZ4	26011	broad.mit.edu	37	chr11	78369905	78369905	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagtaagacaaaggggaAaaaaccctgagaacctggag	13	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78369905	G	G	78369905	1	3	54	0	1	0	0	0	0	0	0	0	10932	29	1	5		5	ODZ4	11	78369905	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	845148	78369905	56636611	2791	59385											
ODZ4	26011	broad.mit.edu	37	chr11	78402951	78402951	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctttgctgcttgattgatAcctgtaattatcccaccaga	6	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78402951	T	T	78402951	1	4	54	0	1	0	0	0	0	0	0	0	10932	406	14	5		5	ODZ4	11	78402951	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	33046	78402951	56603565	2792	59386											
ODZ4	26011	broad.mit.edu	37	chr11	78574057	78574057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctctaagccagtgcccCctgaggggtatagggagacg	16	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78574057	A	A	78574057	3	1	54	1	0	0	0	0	1	0	0	0	10932	623	22	2	7204	2	ODZ4	11	78574057	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	171106	78574057	56432459	2793	59387											
ODZ4	26011	broad.mit.edu	37	chr11	78712455	78712455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcaactcctggggaagGgttgggttgaacaggcaagg	16	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78712455	T	T	78712455	1	4	54	0	1	0	0	0	0	0	0	0	10932	1247	43	2		2	ODZ4	11	78712455	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	138398	78712455	56294061	2794	59388											
ODZ4	26011	broad.mit.edu	37	chr11	79003104	79003104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagctgctgatctttcaCtaagagcacatgttgctgct	8	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79003104	A	A	79003104	1	1	54	0	1	0	0	0	0	0	0	0	10932	580	20	3		3	ODZ4	11	79003104	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	290649	79003104	56003412	2795	59389											
DLG2	1740	broad.mit.edu	37	chr11	83525566	83525566	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacaaatgggccacatcttCaagggtcagctttacctgtg	9	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83525566	A	A	83525566	1	1	54	0	1	0	0	0	0	0	0	0	4595	841	29	3		3	DLG2	11	83525566	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4522462	83525566	51480950	2796	59390											
DLG2	1740	broad.mit.edu	37	chr11	84379012	84379012	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttttgagggtaatctttaGatctcaaaaggcagactaga	9	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84379012	C	C	84379012	1	2	54	0	1	0	0	0	0	0	0	0	4595	957	33	4		4	DLG2	11	84379012	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	853446	84379012	50627504	2797	59391											
DLG2	1740	broad.mit.edu	37	chr11	84731958	84731958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatccccctcctcagcagGgtcatctgcaccgccctcag	8	19	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84731958	T	T	84731958	1	4	54	0	1	0	0	0	0	0	0	0	4595	1247	43	2		2	DLG2	11	84731958	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	352946	84731958	50274558	2798	59392											
DLG2	1740	broad.mit.edu	37	chr11	85118025	85118025	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagaaacctgaaggagatAgagaaaagagtcatggagat	13	4	1	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85118025	G	G	85118025	1	3	54	0	1	0	0	0	0	0	0	0	4595	435	15	5		5	DLG2	11	85118025	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	386067	85118025	49888491	2799	59393											
PICALM	8301	broad.mit.edu	37	chr11	85675631	85675631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattcttagttccatcttcCctactacctaccatcaaatg	2	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85675631	A	A	85675631	1	1	54	0	1	0	0	0	0	0	0	0	11975	638	22	2		2	PICALM	11	85675631	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	557606	85675631	49330885	2800	59394											
PICALM	8301	broad.mit.edu	37	chr11	85712197	85712197	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactgcattggaaagtgtagTtgccctaggataattgaaca	10	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85712197	A	A	85712197	3	1	54	1	0	0	0	0	1	0	0	0	11975	1725	60	5	1132	5	PICALM	11	85712197	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	36566	85712197	49294319	2801	59395											
PRSS23	11098	broad.mit.edu	37	chr11	86533798	86533798	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggggccacctctgggagcaGagagacatgggctggaggtg	19	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86533798	C	C	86533798	1	2	54	0	1	0	0	0	0	0	0	0	12726	957	33	4		4	PRSS23	11	86533798	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	821601	86533798	48472718	2802	59396											
PRSS23	11098	broad.mit.edu	37	chr11	86568132	86568132	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatttgactgttctgctgcGcagcctccacagggcactat	10	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86568132	C	C	86568132	1	2	54	0	1	0	0	0	0	0	0	0	12726	1102	38	4		4	PRSS23	11	86568132	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	34334	86568132	48438384	2803	59397											
TMEM135	65084	broad.mit.edu	37	chr11	86806023	86806023	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgttcttctcctgtaataGatatttacaccttggatacc	5	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86806023	A	A	86806023	1	1	54	0	1	0	0	0	0	0	0	0	16174	957	33	4		4	TMEM135	11	86806023	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	237891	86806023	48200493	2804	59398											
GRM5	2915	broad.mit.edu	37	chr11	88319767	88319767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaagcctttctgtggcaGgctttggaatagctgaagcc	11	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88319767	T	T	88319767	1	4	54	0	1	0	0	0	0	0	0	0	6866	1015	35	2		2	GRM5	11	88319767	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1513744	88319767	46686749	2805	59399											
GRM5	2915	broad.mit.edu	37	chr11	88650989	88650989	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaaaaaatgaagcatgCctacaagatttataaaatag	5	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88650989	G	G	88650989	1	3	54	0	1	0	0	0	0	0	0	0	6866	754	26	4		4	GRM5	11	88650989	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	331222	88650989	46355527	2806	59400											
TYR	7299	broad.mit.edu	37	chr11	88924417	88924417	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagccatcagtctttatgCaatggaacgcccgagggacc	10	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88924417	A	A	88924417	4	1	54	1	0	0	0	0	0	1	0	0	16939	718	25	3	873	3	TYR	11	88924417	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	273428	88924417	46082099	2807	59401											
TYR	7299	broad.mit.edu	37	chr11	89008050	89008050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcactgcctgttgtcaatGtgagctgtttaggtcccttt	9	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89008050	T	T	89008050	1	4	54	0	1	0	0	0	0	0	0	0	16939	1392	48	3		3	TYR	11	89008050	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	83633	89008050	45998466	2808	59402											
NOX4	50507	broad.mit.edu	37	chr11	89135496	89135496	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacaaaattaatctgacctGtggaaaattagcttggaatc	7	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89135496	C	C	89135496	3	2	54	1	0	0	0	0	1	0	0	0	10653	1386	48	4	932	4	NOX4	11	89135496	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	127446	89135496	45871020	2809	59403											
NOX4	50507	broad.mit.edu	37	chr11	89293367	89293367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccatgtgatgacagagaCagagattggagcgatgcatt	13	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89293367	A	A	89293367	1	1	54	0	1	0	0	0	0	0	0	0	10653	493	17	3		3	NOX4	11	89293367	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	157871	89293367	45713149	2810	59404											
NAALAD2	10003	broad.mit.edu	37	chr11	89903353	89903353	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcttttgaatggataaatGaataacgtgtgttcccccct	7	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89903353	A	A	89903353	1	1	54	0	1	0	0	0	0	0	0	0	10222	1305	45	4		4	NAALAD2	11	89903353	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	609986	89903353	45103163	2811	59405											
FAT3	120114	broad.mit.edu	37	chr11	92088448	92088448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtaaaggaaaactcacGcattggaacaagcgtgctgc	10	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92088448	T	T	92088448	3	4	54	1	0	0	0	0	1	0	0	0	5748	1087	38	3	3172	3	FAT3	11	92088448	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2185095	92088448	42918068	2812	59406											
FAT3	120114	broad.mit.edu	37	chr11	92143953	92143953	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctccctggcctccctgccaGaaccaggcaaaataaacaat	6	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92143953	A	A	92143953	1	1	54	0	1	0	0	0	0	0	0	0	5748	957	33	4		4	FAT3	11	92143953	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	55505	92143953	42862563	2813	59407											
FAT3	120114	broad.mit.edu	37	chr11	92384694	92384694	+	Intron	SNP	G	T	T													cttcagattagagtctccatGgggacatctgtgtcttctaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92384694	T	T	92384694	1	4	54	0	1	0	0	0	0	0	0	0	5748	1363	47	2		2	FAT3	11	92384694	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	240741	92384694	42621822	2814	59408	280	2									
FAT3	120114	broad.mit.edu	37	chr11	92384702	92384702	+	Intron	SNP	C	T	T													tagagtctccatggggacatCtgtgtcttctaataggagtt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92384702	T	T	92384702	1	4	54	0	1	0	0	0	0	0	0	0	5748	928	32	4		4	FAT3	11	92384702	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8	92384702	42621814	2815	59409	280	2									
FAT3	120114	broad.mit.edu	37	chr11	92396525	92396525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaccaagatgagtttgcaCctgataccacaggcaatgga	10	9	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92396525	A	A	92396525	1	1	54	0	1	0	0	0	0	0	0	0	5748	522	18	3		3	FAT3	11	92396525	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11823	92396525	42609991	2816	59410											
FAT3	120114	broad.mit.edu	37	chr11	92523337	92523337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggcgtgctctatactgccGagaggctggaccatgaggcc	14	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92523337	A	A	92523337	3	1	54	1	0	0	0	0	1	0	0	0	5748	1059	37	4	4590	4	FAT3	11	92523337	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	126812	92523337	42483179	2817	59411											
FAT3	120114	broad.mit.edu	37	chr11	92530980	92530980	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccacatgtaactcatttcAccattgatttctgtatttta	3	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92530980	T	T	92530980	1	4	54	0	1	0	0	0	0	0	0	0	5748	174	6	5		5	FAT3	11	92530980	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7643	92530980	42475536	2818	59412											
FAT3	120114	broad.mit.edu	37	chr11	92532335	92532335	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagagttatatgagctGgtggtagaagccagccgtga	14	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92532335	T	T	92532335	2	4	54	1	0	0	0	0	0	0	0	1	5748	1335	47	2		2	FAT3	11	92532335	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1355	92532335	42474181	2819	59413											
HEPHL1	341208	broad.mit.edu	37	chr11	93806601	93806601	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgatgcagccccaaacctAgatggtaagtctcactctgg	9	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93806601	T	T	93806601	2	4	54	1	0	0	0	0	0	0	0	1	7122	407	15	5		5	HEPHL1	11	93806601	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1274266	93806601	41199915	2820	59414											
HEPHL1	341208	broad.mit.edu	37	chr11	93837944	93837944	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagtttaaaaagaagcctAtgttgagataagctcatagg	9	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93837944	G	G	93837944	1	3	54	0	1	0	0	0	0	0	0	0	7122	464	16	5		5	HEPHL1	11	93837944	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	31343	93837944	41168572	2821	59415											
PANX1	24145	broad.mit.edu	37	chr11	93886946	93886946	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagcaccttatagtcaaaaaGaacctcagagatgacttggt	8	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93886946	A	A	93886946	1	1	54	0	1	0	0	0	0	0	0	0	11514	957	33	4		4	PANX1	11	93886946	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	49002	93886946	41119570	2822	59416											
AMOTL1	154810	broad.mit.edu	37	chr11	94534614	94534614	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtcgtattaaggagtttaGaatgtatccataagcaatcg	10	5	0	1	rs76917726	byFrequency;by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94534614	A	A	94534614	1	1	54	0	1	0	0	0	0	0	0	0	583	957	33	4		4	AMOTL1	11	94534614	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	647668	94534614	40471902	2823	59417											
AMOTL1	154810	broad.mit.edu	37	chr11	94535099	94535099	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctaaattgaacaagcCagggttttcccaagcgacct	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94535099	T	T	94535099	1	4	54	0	1	0	0	0	0	0	0	0	583	609	21	4		4	AMOTL1	11	94535099	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	485	94535099	40471417	2824	59418											
MAML2	84441	broad.mit.edu	37	chr11	95817843	95817843	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagggaaagggtcaaagaaGagagagtacagccaagggga	17	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95817843	A	A	95817843	1	1	54	0	1	0	0	0	0	0	0	0	9298	957	33	4		4	MAML2	11	95817843	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1282744	95817843	39188673	2825	59419											
CNTN5	53942	broad.mit.edu	37	chr11	98990739	98990740	+	Intron	DNP	GA	AC	AC													ctttgtttaagttctgtgtaGatgctggacattagaccttt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	98990740	AC	AC	98990739	1	1	54	0	1	0	0	0	0	0	0	0	3676	957	33	4		4	CNTN5	11	98990739	Intron	DNP	GA	TCGA-17-Z022-01A-01W-0746-08	3172896	98990739	36015777	2826	59420											
CNTN5	53942	broad.mit.edu	37	chr11	100016662	100016662	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctaacagtcatgatttgCtcattaaattattcaccagt	4	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100016662	G	G	100016662	1	3	54	0	1	0	0	0	0	0	0	0	3676	812	28	4		4	CNTN5	11	100016662	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1025923	100016662	34989854	2827	59421											
CNTN5	53942	broad.mit.edu	37	chr11	100044201	100044201	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaggaagagaaaagaagtaGagagagatgacaagacagag	14	3	0	7			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100044201	C	C	100044201	1	2	54	0	1	0	0	0	0	0	0	0	3676	957	33	4		4	CNTN5	11	100044201	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27539	100044201	34962315	2828	59422											
CNTN5	53942	broad.mit.edu	37	chr11	100128138	100128138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagctctgaagagagcagCagatctcccagcgcagcgct	12	14	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100128138	A	A	100128138	1	1	54	0	1	0	0	0	0	0	0	0	3676	725	25	3		3	CNTN5	11	100128138	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	83937	100128138	34878378	2829	59423											
CNTN5	53942	broad.mit.edu	37	chr11	100141999	100141999	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatttggaagagtcagattgGatttggtatgcttctaatcg	11	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100141999	A	A	100141999	1	1	54	0	1	0	0	0	0	0	0	0	3676	1189	41	4		4	CNTN5	11	100141999	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13861	100141999	34864517	2830	59424											
CNTN5	53942	broad.mit.edu	37	chr11	100208268	100208268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcatgtctgtatccccaGtcaagcaagctgtggatttt	9	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100208268	T	T	100208268	1	4	54	0	1	0	0	0	0	0	0	0	3676	1044	36	3		3	CNTN5	11	100208268	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	66269	100208268	34798248	2831	59425											
CNTN5	53942	broad.mit.edu	37	chr11	100215900	100215900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctcagttctgaaggctgAgatgcccaagatcaaggctc	10	11	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100215900	T	T	100215900	1	4	54	0	1	0	0	0	0	0	0	0	3676	319	11	5		5	CNTN5	11	100215900	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7632	100215900	34790616	2832	59426											
MMP20	9313	broad.mit.edu	37	chr11	102465522	102465522	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaaaaaaaaaaaaaaaAtcaagatcaatgattgattt	3	3	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102465522	C	C	102465522	1	2	54	0	1	0	0	0	0	0	0	0	9752	116	4	5		5	MMP20	11	102465522	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2249622	102465522	32540994	2833	59427											
MMP20	9313	broad.mit.edu	37	chr11	102487414	102487414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacggatggatgtaaaaaGttcttattcttatggttgtg	11	4	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102487414	T	T	102487414	1	4	54	0	1	0	0	0	0	0	0	0	9752	1044	36	3		3	MMP20	11	102487414	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21892	102487414	32519102	2834	59428											
MMP8	4317	broad.mit.edu	37	chr11	102584381	102584381	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaggtgggaggattgcttGaggccaggagtttgacacta	16	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102584381	T	T	102584381	1	4	54	0	1	0	0	0	0	0	0	0	9762	1305	45	3		3	MMP8	11	102584381	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96967	102584381	32422135	2835	59429											
MMP1	4312	broad.mit.edu	37	chr11	102667239	102667239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttagctagcagaaaagaCcgctctttcacttttctaag	7	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102667239	A	A	102667239	1	1	54	0	1	0	0	0	0	0	0	0	9741	522	18	3		3	MMP1	11	102667239	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	82858	102667239	32339277	2836	59430											
MMP3	4314	broad.mit.edu	37	chr11	102709160	102709160	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaactttcccacagttgtctGaagtcccatccttcctacta	5	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102709160	T	T	102709160	1	4	54	0	1	0	0	0	0	0	0	0	9760	1305	45	3		3	MMP3	11	102709160	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41921	102709160	32297356	2837	59431											
MMP3	4314	broad.mit.edu	37	chr11	102709771	102709771	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttgtagtagggaaaattAaagtgttgttcaatttctta	8	3	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102709771	G	G	102709771	1	3	54	0	1	0	0	0	0	0	0	0	9760	377	13	5		5	MMP3	11	102709771	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	611	102709771	32296745	2838	59432											
MMP3	4314	broad.mit.edu	37	chr11	102713391	102713391	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcttatgtgaaaacccctCtgaaccattacctgtatgta	5	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102713391	T	T	102713391	1	4	54	0	1	0	0	0	0	0	0	0	9760	928	32	4		4	MMP3	11	102713391	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3620	102713391	32293125	2839	59433											
DYNC2H1	79659	broad.mit.edu	37	chr11	103013848	103013848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtttattctttaggctGtgcagtaatgattatattac	7	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103013848	T	T	103013848	1	4	54	0	1	0	0	0	0	0	0	0	4886	1392	48	3		3	DYNC2H1	11	103013848	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	300457	103013848	31992668	2840	59434											
DYNC2H1	79659	broad.mit.edu	37	chr11	103178455	103178455	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttttgtaaacaaggaattGaatactcttcaacctaaaga	7	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103178455	C	C	103178455	3	2	54	1	0	0	0	0	1	0	0	0	4886	1281	45	4	11723	4	DYNC2H1	11	103178455	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	164607	103178455	31828061	2841	59435											
PDGFD	80310	broad.mit.edu	37	chr11	103857490	103857490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactaaactgtctttacaGgactaagaaattagccacaa	8	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103857490	T	T	103857490	1	4	54	0	1	0	0	0	0	0	0	0	11754	1015	35	2		2	PDGFD	11	103857490	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	679035	103857490	31149026	2842	59436											
CASP4	837	broad.mit.edu	37	chr11	104816278	104816278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgtgagccaccgtgccCagccccagtatcttatcttt	9	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104816278	A	A	104816278	1	1	54	0	1	0	0	0	0	0	0	0	2699	609	21	2		2	CASP4	11	104816278	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	958788	104816278	30190238	2843	59437											
CASP5	838	broad.mit.edu	37	chr11	104871293	104871293	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggacctcctagatttaccatGagcgaaacaagaaacatatg	8	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104871293	A	A	104871293	1	1	54	0	1	0	0	0	0	0	0	0	2700	1305	45	4		4	CASP5	11	104871293	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	55015	104871293	30135223	2844	59438											
CASP1	834	broad.mit.edu	37	chr11	104896879	104896879	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattctcagcctgtaaaccTagagttcttgactcaaatgg	9	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104896879	C	C	104896879	1	2	54	0	1	0	0	0	0	0	0	0	2694	1537	53	5		5	CASP1	11	104896879	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	25586	104896879	30109637	2845	59439											
GRIA4	2893	broad.mit.edu	37	chr11	105774684	105774684	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccatggggccagggaattGacatggagaggacactcaaa	13	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105774684	T	T	105774684	3	4	54	1	0	0	0	0	1	0	0	0	6836	1290	45	3	1056	3	GRIA4	11	105774684	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	877805	105774684	29231832	2846	59440											
GRIA4	2893	broad.mit.edu	37	chr11	105836800	105836800	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactccaaggttagcctcaaTgtcaccaaaagcgggtaaac	9	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105836800	A	A	105836800	1	1	54	0	1	0	0	0	0	0	0	0	6836	1479	51	5		5	GRIA4	11	105836800	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	62116	105836800	29169716	2847	59441											
CUL5	8065	broad.mit.edu	37	chr11	107975024	107975024	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttgccacaaaagaaaatGataaaagagcaaatagagtg	8	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107975024	C	C	107975024	3	2	54	1	0	0	0	0	1	0	0	0	4092	1290	45	4	2330	4	CUL5	11	107975024	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2138224	107975024	27031492	2848	59442											
PIH1D2	120379	broad.mit.edu	37	chr11	111942085	111942085	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggcaatatattaaaccAtattcctgataaagctagag	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111942085	G	G	111942085	1	3	54	0	1	0	0	0	0	0	0	0	12002	232	8	5		5	PIH1D2	11	111942085	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3967061	111942085	23064431	2849	59443											
NCAM1	4684	broad.mit.edu	37	chr11	112890062	112890062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcaggcatttagggaCgtcgctttaccttcaatagc	9	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112890062	A	A	112890062	1	1	54	0	1	0	0	0	0	0	0	0	10297	551	19	3		3	NCAM1	11	112890062	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	947977	112890062	22116454	2850	59444											
NCAM1	4684	broad.mit.edu	37	chr11	113076156	113076156	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggatcgagacttgcccagGactcaagtccaggtaccatg	11	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113076156	T	T	113076156	1	4	54	0	1	0	0	0	0	0	0	0	10297	1189	41	3		3	NCAM1	11	113076156	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	186094	113076156	21930360	2851	59445											
TTC12	54970	broad.mit.edu	37	chr11	113234784	113234784	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacttcagcaatgtttacaGaagatgtttcacatccagat	7	8	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113234784	A	A	113234784	1	1	54	0	1	0	0	0	0	0	0	0	16805	957	33	4		4	TTC12	11	113234784	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	158628	113234784	21771732	2852	59446											
ANKK1	255239	broad.mit.edu	37	chr11	113266734	113266734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccccgccttcctccccaGctcccctccagccctacctc	4	26	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113266734	T	T	113266734	1	4	54	0	1	0	0	0	0	0	0	0	631	986	34	3		3	ANKK1	11	113266734	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31950	113266734	21739782	2853	59447											
DRD2	1813	broad.mit.edu	37	chr11	113287555	113287555	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaggggcccagggccagctGagcctcaggcaaacaaaagc	14	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113287555	T	T	113287555	1	4	54	0	1	0	0	0	0	0	0	0	4797	1305	45	3		3	DRD2	11	113287555	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	20821	113287555	21718961	2854	59448											
HTR3B	9177	broad.mit.edu	37	chr11	113802090	113802090	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaagatttggagtggatttTctttttgccttgcaggatgc	11	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113802090	A	A	113802090	1	1	54	0	1	0	0	0	0	0	0	0	7515	1798	62	5		5	HTR3B	11	113802090	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	514535	113802090	21204426	2855	59449											
FAM55A	120400	broad.mit.edu	37	chr11	114426199	114426199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtgatctgcctgccttGgcctcccaaagtgctgggat	11	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114426199	A	A	114426199	1	1	54	0	1	0	0	0	0	0	0	0	5635	1363	47	4		4	FAM55A	11	114426199	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	624109	114426199	20580317	2856	59450											
FAM55D	54827	broad.mit.edu	37	chr11	114454275	114454275	+	Intron	DEL	C	-	-													tcaacgttagtgaggactgtCcagcatttgatggcctgttt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114454275	-	-	114454275	6	5	54	0	1	1	0	1	0	0	0	0	5638	870	30	0		0	FAM55D	11	114454275	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	28076	114454275	20552241	2857	59451											
RNF214	257160	broad.mit.edu	37	chr11	117109212	117109212	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattggattgaaactaagttCtttcattatgatagtcggga	9	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117109212	T	T	117109212	1	4	54	0	1	0	0	0	0	0	0	0	13589	928	32	4		4	RNF214	11	117109212	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2654937	117109212	17897304	2858	59452											
RNF214	257160	broad.mit.edu	37	chr11	117109467	117109468	+	Missense_Mutation	DNP	GG	TT	TT													gacacctcagcagcgcaccaGgtggttttaggagaaaactt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	117109468	TT	TT	117109467	3	4	54	1	0	0	0	0	1	0	0	0	13589	991	35	2	264	2	RNF214	11	117109467	Missense_Mutation	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	255	117109467	17897049	2859	59453											
PHLDB1	23187	broad.mit.edu	37	chr11	118485238	118485238	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggtggtaaggtgctgaatCtaatgatgcttgtcctccac	12	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118485238	G	G	118485238	1	3	54	0	1	0	0	0	0	0	0	0	11946	928	32	4		4	PHLDB1	11	118485238	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1375771	118485238	16521278	2860	59454											
DPAGT1	1798	broad.mit.edu	37	chr11	118968927	118968927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattcatctattcctggggCctccacgcactcatccctaa	6	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118968927	A	A	118968927	1	1	54	0	1	0	0	0	0	0	0	0	4750	754	26	3		3	DPAGT1	11	118968927	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	483689	118968927	16037589	2861	59455											
TRIM29	23650	broad.mit.edu	37	chr11	119998058	119998058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttacctgcagaaacaacaCagagtcgctgatgctatgca	9	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119998058	A	A	119998058	3	1	54	1	0	0	0	0	1	0	0	0	16627	478	17	3	674	3	TRIM29	11	119998058	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1029131	119998058	15008458	2862	59456											
POU2F3	25833	broad.mit.edu	37	chr11	120131113	120131113	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcatccacggtgtccacagAtgccaaggggaggagaggtg	17	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120131113	T	T	120131113	1	4	54	0	1	0	0	0	0	0	0	0	12369	348	12	5		5	POU2F3	11	120131113	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	133055	120131113	14875403	2863	59457											
ARHGEF12	23365	broad.mit.edu	37	chr11	120328720	120328720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attagaatttattgtaatatAaagatttgtgctgtttctca	6	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120328720	T	T	120328720	1	4	54	0	1	0	0	0	0	0	0	0	899	377	13	5		5	ARHGEF12	11	120328720	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	197607	120328720	14677796	2864	59458											
GRIK4	2900	broad.mit.edu	37	chr11	120429025	120429025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccctcaggctgtgcacGgtggctcacgcctgtaatcc	10	14	2	0	rs149519937	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120429025	T	T	120429025	1	4	54	0	1	0	0	0	0	0	0	0	6842	1131	39	1		1	GRIK4	11	120429025	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	100305	120429025	14577491	2865	59459											
GRIK4	2900	broad.mit.edu	37	chr11	120541279	120541279	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcacacctgctgtgccctCtgcctggaacacttttcacc	6	17	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120541279	T	T	120541279	1	4	54	0	1	0	0	0	0	0	0	0	6842	928	32	4		4	GRIK4	11	120541279	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112254	120541279	14465237	2866	59460											
SORL1	6653	broad.mit.edu	37	chr11	121383919	121383919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtggatattttatggcGcctccctgaagtcaggtctc	12	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121383919	T	T	121383919	1	4	54	0	1	0	0	0	0	0	0	0	15048	1102	38	3		3	SORL1	11	121383919	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	842640	121383919	13622597	2867	59461											
CRTAM	56253	broad.mit.edu	37	chr11	122738153	122738153	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaggactggcaagaaagaAaagtggcatcctgctgctca	11	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122738153	T	T	122738153	3	4	54	1	0	0	0	0	1	0	0	0	3929	14	1	5	884	5	CRTAM	11	122738153	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1354234	122738153	12268363	2868	59462											
OR8B2	26595	broad.mit.edu	37	chr11	124252597	124252597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaaacataagaaatgaGgatggtacaactgggtaccg	11	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124252597	A	A	124252597	3	1	54	1	0	0	0	0	1	0	0	0	11321	1000	35	4	301	4	OR8B2	11	124252597	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1514444	124252597	10753919	2869	59463											
OR8B8	26493	broad.mit.edu	37	chr11	124310951	124310951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcctgcgaggataaactGtgtcacgaaggaggaattct	12	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124310951	T	T	124310951	3	4	54	1	0	0	0	0	1	0	0	0	11324	1386	48	3	907	3	OR8B8	11	124310951	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	58354	124310951	10695565	2870	59464											
SLC37A2	219855	broad.mit.edu	37	chr11	124955343	124955343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctgtccacggtcacggCcatcattgacggcaccggct	11	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124955343	A	A	124955343	3	1	54	1	0	0	0	0	1	0	0	0	14712	739	26	3	1359	3	SLC37A2	11	124955343	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	644392	124955343	10051173	2871	59465											
PKNOX2	63876	broad.mit.edu	37	chr11	125202290	125202290	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacctgcaccccaaatcttTttgatgcatggaaactgcat	7	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125202290	A	A	125202290	1	1	54	0	1	0	0	0	0	0	0	0	12078	1856	64	5		5	PKNOX2	11	125202290	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	246947	125202290	9804226	2872	59466											
PKNOX2	63876	broad.mit.edu	37	chr11	125298878	125298878	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagatcagcatatgcccaGccctcactagtctccacctc	6	18	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298878	A	A	125298878	1	1	54	0	1	0	0	0	0	0	0	0	12078	986	34	4		4	PKNOX2	11	125298878	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	96588	125298878	9707638	2873	59467											
STT3A	3703	broad.mit.edu	37	chr11	125477690	125477690	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgggaagagatgatatttGagttggaccttgaatgatga	13	2	0	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125477690	C	C	125477690	1	2	54	0	1	0	0	0	0	0	0	0	15451	1305	45	4		4	STT3A	11	125477690	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	178812	125477690	9528826	2874	59468											
ACRV1	56	broad.mit.edu	37	chr11	125546225	125546225	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttgatgtgttctcaggcAgaaattgcctcatgaagtcc	10	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125546225	C	C	125546225	1	2	54	0	1	0	0	0	0	0	0	0	172	203	7	5		5	ACRV1	11	125546225	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	68535	125546225	9460291	2875	59469											
SRPR	6734	broad.mit.edu	37	chr11	126135991	126135991	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcgcactgcagggacaggaGattacacatacacataaaac	9	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126135991	C	C	126135991	1	2	54	0	1	0	0	0	0	0	0	0	15280	957	33	4		4	SRPR	11	126135991	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	589766	126135991	8870525	2876	59470											
TIRAP	114609	broad.mit.edu	37	chr11	126163534	126163534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgctgggtttgggaggtGtgacaacgctgtgattggtc	17	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126163534	T	T	126163534	1	4	54	0	1	0	0	0	0	0	0	0	16050	1392	48	3		3	TIRAP	11	126163534	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27543	126163534	8842982	2877	59471											
KIRREL3	84623	broad.mit.edu	37	chr11	126597778	126597778	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagacatctgcaggcagtgGgatgcggatcagaagccctg	15	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126597778	A	A	126597778	1	1	54	0	1	0	0	0	0	0	0	0	8397	1247	43	4		4	KIRREL3	11	126597778	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	434244	126597778	8408738	2878	59472											
KIRREL3	84623	broad.mit.edu	37	chr11	126615968	126615968	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactccatctgctttttgtTaggtttctttgtggacttct	7	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126615968	G	G	126615968	1	3	54	0	1	0	0	0	0	0	0	0	8397	1769	61	5		5	KIRREL3	11	126615968	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	18190	126615968	8390548	2879	59473											
ARHGAP32	9743	broad.mit.edu	37	chr11	128948207	128948207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaatctgaacagcagacCttgaagccaagatctttcct	7	10	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128948207	A	A	128948207	1	1	54	0	1	0	0	0	0	0	0	0	883	696	24	2		2	ARHGAP32	11	128948207	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2332239	128948207	6058309	2880	59474											
NTM	50863	broad.mit.edu	37	chr11	131260547	131260547	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtggtgcaggcctgggaaAcagtggtaaccatcagcatt	13	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131260547	G	G	131260547	1	3	54	0	1	0	0	0	0	0	0	0	10794	58	2	5		5	NTM	11	131260547	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2312340	131260547	3745969	2881	59475											
NTM	50863	broad.mit.edu	37	chr11	131264629	131264629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatccatctactgagaggcCctgcagaactcaggcatctc	8	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131264629	A	A	131264629	1	1	54	0	1	0	0	0	0	0	0	0	10794	638	22	2		2	NTM	11	131264629	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4082	131264629	3741887	2882	59476											
NTM	50863	broad.mit.edu	37	chr11	131465773	131465773	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatggtttacttctgttgaaCaaaaagcagtagaaagaagc	9	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131465773	T	T	131465773	1	4	54	0	1	0	0	0	0	0	0	0	10794	493	17	4		4	NTM	11	131465773	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	201144	131465773	3540743	2883	59477											
NTM	50863	broad.mit.edu	37	chr11	131593380	131593380	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataaaaacagaaataaagatGgtaaaaggtcactcctttgt	7	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131593380	C	C	131593380	1	2	54	0	1	0	0	0	0	0	0	0	10794	1363	47	4		4	NTM	11	131593380	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	127607	131593380	3413136	2884	59478											
NTM	50863	broad.mit.edu	37	chr11	132104222	132104222	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggccatcatcttcccaggaGgagcacatttgcctcaatca	9	13	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132104222	C	C	132104222	1	2	54	0	1	0	0	0	0	0	0	0	10794	1015	35	4		4	NTM	11	132104222	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	510842	132104222	2902294	2885	59479											
OPCML	4978	broad.mit.edu	37	chr11	132306119	132306119	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaatcctcattccatccagAccagtggctaacctgcaaga	6	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132306119	T	T	132306119	2	4	54	1	0	0	0	0	0	0	0	1	10968	262	10	5		5	OPCML	11	132306119	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	201897	132306119	2700397	2886	59480											
OPCML	4978	broad.mit.edu	37	chr11	133392246	133392246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagttgacacgtatctgGcatttggtattgtactaccc	9	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133392246	A	A	133392246	1	1	54	0	1	0	0	0	0	0	0	0	10968	1218	42	4		4	OPCML	11	133392246	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1086127	133392246	1614270	2887	59481											
THYN1	29087	broad.mit.edu	37	chr11	134118959	134118959	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctcagtatcacctcatctGagtaagtgctgggccgtgta	10	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134118959	A	A	134118959	1	1	54	0	1	0	0	0	0	0	0	0	16009	1305	45	4		4	THYN1	11	134118959	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	726713	134118959	887557	2888	59482											
GLB1L3	112937	broad.mit.edu	37	chr11	134147136	134147136	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggctctggcctctaaaGcgcccccggcacagcttccc	9	20	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134147136	A	A	134147136	1	1	54	0	1	0	0	0	0	0	0	0	6494	986	34	4		4	GLB1L3	11	134147136	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28177	134147136	859380	2889	59483											
IQSEC3	440073	broad.mit.edu	37	chr12	280207	280207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagctgcagagatgcttgaGgggcacaggggaggggcagg	20	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	280207	T	T	280207	1	4	54	0	1	0	0	0	0	0	0	0	7889	1015	35	2		2	IQSEC3	12	280207	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		280207	133571688	2890	59484											
SLC6A12	6539	broad.mit.edu	37	chr12	308150	308150	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggggacgcagtggcccTccagccacgccccacaggca	14	16	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	308150	C	C	308150	1	2	54	0	1	0	0	0	0	0	0	0	14789	1566	54	5		5	SLC6A12	12	308150	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	27943	308150	133543745	2891	59485											
SLC6A13	6540	broad.mit.edu	37	chr12	358936	358936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttataaagtgagcattaccCtgataataaaagcagacaaa	6	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	358936	A	A	358936	1	1	54	0	1	0	0	0	0	0	0	0	14790	696	24	2		2	SLC6A13	12	358936	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	50786	358936	133492959	2892	59486											
SLC6A13	6540	broad.mit.edu	37	chr12	361041	361041	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaggctgtggtgggaagAtcatttgagctcagaaggtc	17	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	361041	G	G	361041	1	3	54	0	1	0	0	0	0	0	0	0	14790	348	12	5		5	SLC6A13	12	361041	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2105	361041	133490854	2893	59487											
CCDC77	84318	broad.mit.edu	37	chr12	529686	529686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatagcagcaccctccatGctccattacagtgctcttct	5	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	529686	A	A	529686	1	1	54	0	1	0	0	0	0	0	0	0	2879	1334	46	4		4	CCDC77	12	529686	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	168645	529686	133322209	2894	59488											
WNK1	65125	broad.mit.edu	37	chr12	1006053	1006053	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaccccatacctccccacCacacacacacacacacacac	0	25	0	0	rs72348777		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1006053	T	T	1006053	1	4	54	0	1	0	0	0	0	0	0	0	17504	609	21	4		4	WNK1	12	1006053	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	476367	1006053	132845842	2895	59489											
ERC1	23085	broad.mit.edu	37	chr12	1137202	1137202	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggagggagttcgggaagcAgtgttggaggtggcagtggg	23	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1137202	G	G	1137202	3	3	54	1	0	0	0	0	1	0	0	0	5252	188	7	5	135	5	ERC1	12	1137202	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	131149	1137202	132714693	2896	59490											
CACNA1C	775	broad.mit.edu	37	chr12	2224636	2224636	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcagcaccacggccacacGcccgccccgagccctgctct	11	21	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2224636	C	C	2224636	3	2	54	1	0	0	0	0	1	0	0	0	2566	1087	38	4	302	4	CACNA1C	12	2224636	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1087434	2224636	131627259	2897	59491											
CACNA1C	775	broad.mit.edu	37	chr12	2270283	2270283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtgagccaccgcacccgGctagctctggttatcctttg	12	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2270283	T	T	2270283	1	4	54	0	1	0	0	0	0	0	0	0	2566	1218	42	3		3	CACNA1C	12	2270283	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45647	2270283	131581612	2898	59492											
CACNA1C	775	broad.mit.edu	37	chr12	2559114	2559114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccattctcactctacaggGggcctggttctgtggcccca	10	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2559114	T	T	2559114	1	4	54	0	1	0	0	0	0	0	0	0	2566	1247	43	2		2	CACNA1C	12	2559114	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	288831	2559114	131292781	2899	59493											
CACNA1C	775	broad.mit.edu	37	chr12	2601299	2601299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttttgtgaattccacacCgttaccttccatagccagag	6	12	0	2	rs148144048	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2601299	A	A	2601299	1	1	54	0	1	0	0	0	0	0	0	0	2566	667	23	1		1	CACNA1C	12	2601299	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42185	2601299	131250596	2900	59494											
CACNA1C	775	broad.mit.edu	37	chr12	2659008	2659009	+	Intron	DNP	CG	AT	AT													agcctctctttctgccaaccCgcactgggtcttgcggtggg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	2659009	AT	AT	2659008	1	1	54	0	1	0	0	0	0	0	0	0	2566	667	23	1		1	CACNA1C	12	2659008	Intron	DNP	CG	TCGA-17-Z022-01A-01W-0746-08	57709	2659008	131192887	2901	59495											
CACNA1C	775	broad.mit.edu	37	chr12	2664748	2664748	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttgctggttaaactgTggctgtaaataacaatgctg	10	5	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2664748	A	A	2664748	1	1	54	0	1	0	0	0	0	0	0	0	2566	1711	59	5		5	CACNA1C	12	2664748	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5740	2664748	131187147	2902	59496											
CACNA1C	775	broad.mit.edu	37	chr12	2706313	2706313	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgtggccccttttctgGtgaacatccactgacctctc	9	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2706313	T	T	2706313	1	4	54	0	1	0	0	0	0	0	0	0	2566	1276	44	3		3	CACNA1C	12	2706313	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41565	2706313	131145582	2903	59497											
CACNA1C	775	broad.mit.edu	37	chr12	2715585	2715585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtttttgcattgcagtGctacttgcagcactggcgtc	10	11	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2715585	T	T	2715585	1	4	54	0	1	0	0	0	0	0	0	0	2566	1334	46	3		3	CACNA1C	12	2715585	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9272	2715585	131136310	2904	59498											
CACNA1C	775	broad.mit.edu	37	chr12	2721163	2721163	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagatgatcctgaagctcaTtgccttcaaacccaaggtag	10	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2721163	C	C	2721163	3	2	54	1	0	0	0	0	1	0	0	0	2566	1493	52	5	4098	5	CACNA1C	12	2721163	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5578	2721163	131130732	2905	59499											
CACNA1C	775	broad.mit.edu	37	chr12	2743573	2743573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatggcgtctgtccctaacCgtccgtgcctgctctaacac	8	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2743573	A	A	2743573	1	1	54	0	1	0	0	0	0	0	0	0	2566	667	23	1		1	CACNA1C	12	2743573	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22410	2743573	131108322	2906	59500											
CACNA1C	775	broad.mit.edu	37	chr12	2778401	2778401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctcctgaatggtctccCtgcctctagctcaggggttt	10	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2778401	A	A	2778401	1	1	54	0	1	0	0	0	0	0	0	0	2566	696	24	2		2	CACNA1C	12	2778401	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	34828	2778401	131073494	2907	59501											
NRIP2	83714	broad.mit.edu	37	chr12	2940243	2940243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccatagattgctcagcaGtgaagaaatgggaagaggag	13	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2940243	T	T	2940243	1	4	54	0	1	0	0	0	0	0	0	0	10748	1044	36	3		3	NRIP2	12	2940243	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	161842	2940243	130911652	2908	59502											
FOXM1	2305	broad.mit.edu	37	chr12	2981044	2981044	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagtgctggctggaatacaGagtgaccaagggactctgcc	13	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2981044	C	C	2981044	1	2	54	0	1	0	0	0	0	0	0	0	6078	957	33	4		4	FOXM1	12	2981044	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	40801	2981044	130870851	2909	59503											
TSPAN9	10867	broad.mit.edu	37	chr12	3306702	3306702	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatggtaaaaccactgCagtttcctttaaagtagggg	11	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3306702	G	G	3306702	1	3	54	0	1	0	0	0	0	0	0	0	16779	725	25	4		4	TSPAN9	12	3306702	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	325658	3306702	130545193	2910	59504											
EFCAB4B	84766	broad.mit.edu	37	chr12	3736779	3736779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggagcccagaacttcggGcagctcctcacctctcctgc	9	17	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3736779	A	A	3736779	1	1	54	0	1	0	0	0	0	0	0	0	4977	1218	42	4		4	EFCAB4B	12	3736779	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	430077	3736779	130115116	2911	59505											
CCND2	894	broad.mit.edu	37	chr12	4398020	4398020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcagactttaagtttgCcatgtacccaccgtcgatga	8	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4398020	T	T	4398020	3	4	54	1	0	0	0	0	1	0	0	0	2947	739	26	4	598	4	CCND2	12	4398020	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	661241	4398020	129453875	2912	59506											
CCND2	894	broad.mit.edu	37	chr12	4408958	4408958	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagctaaattacgcatgTtttctccgtaggatgctcta	8	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4408958	A	A	4408958	1	1	54	0	1	0	0	0	0	0	0	0	2947	1740	60	5		5	CCND2	12	4408958	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	10938	4408958	129442937	2913	59507											
FGF6	2251	broad.mit.edu	37	chr12	4543353	4543353	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcgaacagatgatgctttAaatctgtgagccttcttttg	8	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4543353	G	G	4543353	1	3	54	0	1	0	0	0	0	0	0	0	5913	377	13	5		5	FGF6	12	4543353	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	134395	4543353	129308542	2914	59508											
FGF6	2251	broad.mit.edu	37	chr12	4554566	4554566	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcgcgagacctggacagCagggtgccccagcccctcga	14	17	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4554566	A	A	4554566	2	1	54	1	0	0	0	0	0	0	0	1	5913	697	25	3		3	FGF6	12	4554566	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11213	4554566	129297329	2915	59509											
C12orf4	57102	broad.mit.edu	37	chr12	4629749	4629749	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtagcaccagtagaaaaTgaagccggtggtacattgaa	11	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4629749	C	C	4629749	1	2	54	0	1	0	0	0	0	0	0	0	1698	1479	51	5		5	C12orf4	12	4629749	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	75183	4629749	129222146	2916	59510											
RAD51AP1	10635	broad.mit.edu	37	chr12	4655170	4655170	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaccaagtctgttttgggtTgagtagggtgtttcccacct	12	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4655170	A	A	4655170	1	1	54	0	1	0	0	0	0	0	0	0	13094	1827	63	5		5	RAD51AP1	12	4655170	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	25421	4655170	129196725	2917	59511											
DYRK4	8798	broad.mit.edu	37	chr12	4700539	4700539	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaagagctaagctgcgctgGagtgagctaagctgccaggt	14	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4700539	T	T	4700539	1	4	54	0	1	0	0	0	0	0	0	0	4898	1189	41	3		3	DYRK4	12	4700539	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45369	4700539	129151356	2918	59512											
NDUFA9	4704	broad.mit.edu	37	chr12	4791498	4791498	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctccttttgtgtgacttctGaaaaagccagctccacacac	7	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4791498	A	A	4791498	1	1	54	0	1	0	0	0	0	0	0	0	10367	1305	45	4		4	NDUFA9	12	4791498	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	90959	4791498	129060397	2919	59513											
KCNA6	3742	broad.mit.edu	37	chr12	4920249	4920249	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgagtcatccgcctggtcCgggtgttccgcatcttcaag	11	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4920249	A	A	4920249	2	1	54	1	0	0	0	0	0	0	0	1	8077	643	23	1		1	KCNA6	12	4920249	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	128751	4920249	128931646	2920	59514											
KCNA5	3741	broad.mit.edu	37	chr12	5154729	5154729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatccctgacgccttctgGtgggcagtggtcaccatgac	12	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5154729	T	T	5154729	3	4	54	1	0	0	0	0	1	0	0	0	8076	1270	44	3	1418	3	KCNA5	12	5154729	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	234480	5154729	128697166	2921	59515											
KCNA5	3741	broad.mit.edu	37	chr12	5154951	5154951	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactcagagccaggggccGgggctggacagaggagtcca	18	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5154951	T	T	5154951	2	4	54	1	0	0	0	0	0	0	0	1	8076	1103	39	1		1	KCNA5	12	5154951	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	222	5154951	128696944	2922	59516											
NTF3	4908	broad.mit.edu	37	chr12	5589057	5589057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctaggcctcatgttttccCacttgctcttgccttcagtg	7	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5589057	A	A	5589057	1	1	54	0	1	0	0	0	0	0	0	0	10791	609	21	2		2	NTF3	12	5589057	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	434106	5589057	128262838	2923	59517											
ANO2	57101	broad.mit.edu	37	chr12	5738833	5738833	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcctggagtgaatggatCactggggactaagagacttt	12	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5738833	T	T	5738833	1	4	54	0	1	0	0	0	0	0	0	0	697	841	29	4		4	ANO2	12	5738833	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	149776	5738833	128113062	2924	59518											
ANO2	57101	broad.mit.edu	37	chr12	5842068	5842068	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatagcgccggtgttgagaAaaagagaggaaatgttaact	14	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5842068	T	T	5842068	1	4	54	0	1	0	0	0	0	0	0	0	697	29	1	5		5	ANO2	12	5842068	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	103235	5842068	128009827	2925	59519											
ANO2	57101	broad.mit.edu	37	chr12	5876091	5876091	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaacaaggcagtaagccttGaaaagcaaggctggcattcg	11	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5876091	C	C	5876091	1	2	54	0	1	0	0	0	0	0	0	0	697	1305	45	4		4	ANO2	12	5876091	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	34023	5876091	127975804	2926	59520											
ANO2	57101	broad.mit.edu	37	chr12	5969296	5969296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttccaccagcttcctaCgctcaagcctcctcacattc	5	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5969296	A	A	5969296	1	1	54	0	1	0	0	0	0	0	0	0	697	551	19	3		3	ANO2	12	5969296	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	93205	5969296	127882599	2927	59521											
VWF	7450	broad.mit.edu	37	chr12	6122794	6122794	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagcgatctccaattccaaTagggaacactgtcactccta	7	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6122794	A	A	6122794	3	1	54	1	0	0	0	0	1	0	0	0	17373	1406	49	5	3052	5	VWF	12	6122794	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	153498	6122794	127729101	2928	59522											
VWF	7450	broad.mit.edu	37	chr12	6126259	6126259	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacctcagatttagagacacTgagaagactccaattctacc	6	11	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6126259	A	A	6126259	1	1	54	0	1	0	0	0	0	0	0	0	17373	1595	55	5		5	VWF	12	6126259	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3465	6126259	127725636	2929	59523											
C12orf53	196500	broad.mit.edu	37	chr12	6811821	6811821	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttgcccaggctggagtGcaatggcacgatctcagttt	12	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6811821	T	T	6811821	1	4	54	0	1	0	0	0	0	0	0	0	1711	1334	46	3		3	C12orf53	12	6811821	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	685562	6811821	127040074	2930	59524											
CD4	920	broad.mit.edu	37	chr12	6923306	6923306	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccatatgtcttctgctcccAggtccatccaagctgaatga	7	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6923306	C	C	6923306	5	2	54	1	0	0	0	0	0	0	1	0	3044	202	7	5	223	5	CD4	12	6923306	Splice_Site	SNP	A	TCGA-17-Z022-01A-01W-0746-08	111485	6923306	126928589	2931	59525											
CD163L1	283316	broad.mit.edu	37	chr12	7525912	7525912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggtgtttagaaagatacCcaccttcacatgtgatccag	9	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7525912	A	A	7525912	1	1	54	0	1	0	0	0	0	0	0	0	2998	638	22	2		2	CD163L1	12	7525912	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	602606	7525912	126325983	2932	59526											
CD163L1	283316	broad.mit.edu	37	chr12	7527243	7527243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacacaccacgtgggcatcGctcaggtcccagccgtcatc	10	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7527243	T	T	7527243	3	4	54	1	0	0	0	0	1	0	0	0	2998	1078	38	3	1185	3	CD163L1	12	7527243	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1331	7527243	126324652	2933	59527											
CLEC6A	93978	broad.mit.edu	37	chr12	8612997	8612997	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttatcaaaccatcagatCttgtgagacttattcactac	4	11	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8612997	A	A	8612997	1	1	54	0	1	0	0	0	0	0	0	0	3552	928	32	3		3	CLEC6A	12	8612997	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1085754	8612997	125238898	2934	59528											
CLEC4D	338339	broad.mit.edu	37	chr12	8666295	8666295	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatagaacaaattcttgcCgtcctgaccattgaacaaga	6	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8666295	A	A	8666295	1	1	54	0	1	0	0	0	0	0	0	0	3546	667	23	1		1	CLEC4D	12	8666295	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	53298	8666295	125185600	2935	59529											
CLEC4E	26253	broad.mit.edu	37	chr12	8689842	8689842	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaatattcccagttcaatgGacaacaattcttgactgaac	5	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8689842	A	A	8689842	3	1	54	1	0	0	0	0	1	0	0	0	3547	1174	41	4	430	4	CLEC4E	12	8689842	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23547	8689842	125162053	2936	59530											
CLEC4E	26253	broad.mit.edu	37	chr12	8692086	8692086	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgccaagtccaactctctCtacccttccttccaaaagta	3	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8692086	A	A	8692086	1	1	54	0	1	0	0	0	0	0	0	0	3547	928	32	3		3	CLEC4E	12	8692086	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2244	8692086	125159809	2937	59531											
MFAP5	8076	broad.mit.edu	37	chr12	8808317	8808317	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttatttttctttatgtaGacatgatcctttatctatcc	3	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8808317	A	A	8808317	1	1	54	0	1	0	0	0	0	0	0	0	9611	957	33	4		4	MFAP5	12	8808317	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	116231	8808317	125043578	2938	59532											
PHC1	1911	broad.mit.edu	37	chr12	9074170	9074170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacttctcccaaatccttaGtcctggttcctttctgtacc	4	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9074170	T	T	9074170	1	4	54	0	1	0	0	0	0	0	0	0	11911	1044	36	3		3	PHC1	12	9074170	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	265853	9074170	124777725	2939	59533											
PHC1	1911	broad.mit.edu	37	chr12	9082879	9082879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagttcctccttaggagGtaggaaggccttaaagtata	11	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9082879	T	T	9082879	1	4	54	0	1	0	0	0	0	0	0	0	11911	1276	44	3		3	PHC1	12	9082879	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8709	9082879	124769016	2940	59534											
A2M	2	broad.mit.edu	37	chr12	9265028	9265028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacaaagaccagactgtcCtcgttcttaaccatcactgt	7	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9265028	A	A	9265028	3	1	54	1	0	0	0	0	1	0	0	0	4	680	24	2	4185	2	A2M	12	9265028	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	182149	9265028	124586867	2941	59535											
PZP	5858	broad.mit.edu	37	chr12	9302230	9302230	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgttgggtgaaggaagaaacGaaagatctatgaactaggga	14	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9302230	C	C	9302230	1	2	54	0	1	0	0	0	0	0	0	0	12977	1073	37	4		4	PZP	12	9302230	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	37202	9302230	124549665	2942	59536											
PZP	5858	broad.mit.edu	37	chr12	9304978	9304978	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatttctgctttcaagcatCactttaagcctgtctgtctt	5	10	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9304978	T	T	9304978	1	4	54	0	1	0	0	0	0	0	0	0	12977	841	29	4		4	PZP	12	9304978	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2748	9304978	124546917	2943	59537											
PZP	5858	broad.mit.edu	37	chr12	9316561	9316561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatagtgattctggggactaGcttgggtgagaacagtggga	17	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9316561	T	T	9316561	1	4	54	0	1	0	0	0	0	0	0	0	12977	986	34	3		3	PZP	12	9316561	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11583	9316561	124535334	2944	59538											
PRH1	5554	broad.mit.edu	37	chr12	11035042	11035042	+	Frame_Shift_Del	DEL	C	-	-													gaggaggagggggatggcctCcctgttggggtggtccttgt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11035042	-	-	11035042	7	5	54	1	0	1	0	1	0	0	0	0	12588	855	30	0	211	0	PRH1	12	11035042	Frame_Shift_Del	DEL	C	TCGA-17-Z022-01A-01W-0746-08	1718481	11035042	122816853	2945	59539											
PRH1	5554	broad.mit.edu	37	chr12	11036788	11036788	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctgagctgaaggccagcAgggccactgacagcagaatc	14	11	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11036788	G	G	11036788	3	3	54	1	0	0	0	0	1	0	0	0	12588	188	7	5	487	5	PRH1	12	11036788	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1746	11036788	122815107	2946	59540											
PRH2	5555	broad.mit.edu	37	chr12	11083451	11083451	+	Frame_Shift_Del	DEL	G	-	-													ccacaaggaccaccccaacaGggaggccatccccctcctcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11083451	-	-	11083451	7	5	54	1	0	1	0	1	0	0	0	0	12589	991	35	0	301	0	PRH2	12	11083451	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	46663	11083451	122768444	2947	59541											
ETV6	2120	broad.mit.edu	37	chr12	11978546	11978546	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacttaatgacgtctgcaaAgagccattctcaaattaggt	7	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11978546	G	G	11978546	1	3	54	0	1	0	0	0	0	0	0	0	5325	87	3	5		5	ETV6	12	11978546	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	895095	11978546	121873349	2948	59542											
ETV6	2120	broad.mit.edu	37	chr12	12264150	12264150	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaccaccgaggacttaaaGgagaagaaggaagttgtgga	13	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12264150	A	A	12264150	1	1	54	0	1	0	0	0	0	0	0	0	5325	1015	35	4		4	ETV6	12	12264150	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	285604	12264150	121587745	2949	59543											
DUSP16	80824	broad.mit.edu	37	chr12	12673023	12673023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacatttaccagtgctggGgcgaataattgcttcctgtt	9	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12673023	A	A	12673023	1	1	54	0	1	0	0	0	0	0	0	0	4856	1247	43	4		4	DUSP16	12	12673023	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	408873	12673023	121178872	2950	59544											
GSG1	83445	broad.mit.edu	37	chr12	13238120	13238120	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagcaccatcctggtgtaCgtgttgaaggtggtgacagc	13	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13238120	G	G	13238120	2	3	54	1	0	0	0	0	0	0	0	1	6886	536	19	4		4	GSG1	12	13238120	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	565097	13238120	120613775	2951	59545											
GRIN2B	2904	broad.mit.edu	37	chr12	13792235	13792235	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctagtgccagatagcgcttgGatgggtcataaaaatacaaa	10	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13792235	C	C	13792235	1	2	54	0	1	0	0	0	0	0	0	0	6846	1189	41	4		4	GRIN2B	12	13792235	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	554115	13792235	120059660	2952	59546											
GRIN2B	2904	broad.mit.edu	37	chr12	13913000	13913000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatcctgaccacaacacGgaatgctgaagcctgtcctc	7	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13913000	T	T	13913000	1	4	54	0	1	0	0	0	0	0	0	0	6846	1131	39	1		1	GRIN2B	12	13913000	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	120765	13913000	119938895	2953	59547											
GRIN2B	2904	broad.mit.edu	37	chr12	14013684	14013684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagctaccatgctacacCctgatcaacatgtctatttc	4	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14013684	A	A	14013684	1	1	54	0	1	0	0	0	0	0	0	0	6846	638	22	2		2	GRIN2B	12	14013684	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	100684	14013684	119838211	2954	59548											
ATF7IP	55729	broad.mit.edu	37	chr12	14629025	14629025	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtttatttgtgttctttttGgaatggaagttttttagatt	10	1	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14629025	C	C	14629025	1	2	54	0	1	0	0	0	0	0	0	0	1091	1363	47	4		4	ATF7IP	12	14629025	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	615341	14629025	119222870	2955	59549											
DERA	51071	broad.mit.edu	37	chr12	16177039	16177039	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttaaactgaaatgtgaaGagaaaaaactgggaagaaaa	9	3	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16177039	C	C	16177039	1	2	54	0	1	0	0	0	0	0	0	0	4485	957	33	4		4	DERA	12	16177039	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1548014	16177039	117674856	2956	59550											
PIK3C2G	5288	broad.mit.edu	37	chr12	18489402	18489402	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactttctcaaatctagtaCccaaactaaactccagtttg	4	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18489402	T	T	18489402	1	4	54	0	1	0	0	0	0	0	0	0	12006	522	18	4		4	PIK3C2G	12	18489402	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2312363	18489402	115362493	2957	59551											
PIK3C2G	5288	broad.mit.edu	37	chr12	18800728	18800728	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagatattagcagctaattTtttttattaaaagcaatact	4	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18800728	C	C	18800728	1	2	54	0	1	0	0	0	0	0	0	0	12006	1856	64	5		5	PIK3C2G	12	18800728	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	311326	18800728	115051167	2958	59552											
PLCZ1	89869	broad.mit.edu	37	chr12	18846020	18846020	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaagtggatgatctgagGgggaccccaatgtcagtagg	14	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18846020	C	C	18846020	1	2	54	0	1	0	0	0	0	0	0	0	12139	1247	43	4		4	PLCZ1	12	18846020	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	45292	18846020	115005875	2959	59553											
SLCO1C1	53919	broad.mit.edu	37	chr12	20874971	20874971	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaaaatgcaaaaataatgGaaatggcaagaggtaagtca	11	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20874971	T	T	20874971	4	4	54	1	0	0	0	0	0	1	0	0	14839	1175	41	3	1035	3	SLCO1C1	12	20874971	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2028951	20874971	112976924	2960	59554											
SLCO1B1	10599	broad.mit.edu	37	chr12	21281914	21281914	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggtatagaaacatgttTggagaataatatgtagaata	12	1	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21281914	C	C	21281914	1	2	54	0	1	0	0	0	0	0	0	0	14837	1827	63	5		5	SLCO1B1	12	21281914	5'Flank	SNP	T	TCGA-17-Z022-01A-01W-0746-08	406943	21281914	112569981	2961	59555											
KCNJ8	3764	broad.mit.edu	37	chr12	21919617	21919617	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattttgaataatgaaatatGccaagctgagcttttcattt	6	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21919617	C	C	21919617	1	2	54	0	1	0	0	0	0	0	0	0	8126	1334	46	4		4	KCNJ8	12	21919617	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	637703	21919617	111932278	2962	59556											
ABCC9	10060	broad.mit.edu	37	chr12	21997988	21997988	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacggttgaaggaatgcaatTttttgaggcccagggtagta	14	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21997988	A	A	21997988	1	1	54	0	1	0	0	0	0	0	0	0	59	1856	64	5		5	ABCC9	12	21997988	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	78371	21997988	111853907	2963	59557											
ST8SIA1	6489	broad.mit.edu	37	chr12	22386182	22386182	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttttctcagaagcaacaCtgaatctaggaagaaacatt	7	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22386182	T	T	22386182	1	4	54	0	1	0	0	0	0	0	0	0	15349	580	20	4		4	ST8SIA1	12	22386182	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	388194	22386182	111465713	2964	59558											
SOX5	6660	broad.mit.edu	37	chr12	23728812	23728812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagctgtgataaggaaagGctgataaaaaatgcctagaa	11	4	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23728812	T	T	23728812	1	4	54	0	1	0	0	0	0	0	0	0	15068	1218	42	3		3	SOX5	12	23728812	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1342630	23728812	110123083	2965	59559											
SOX5	6660	broad.mit.edu	37	chr12	24180138	24180138	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagccagatctttaaattttGaactcctcatgactcaccct	4	12	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24180138	C	C	24180138	1	2	54	0	1	0	0	0	0	0	0	0	15068	1305	45	4		4	SOX5	12	24180138	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	451326	24180138	109671757	2966	59560											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	54	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1218147	25398285	108453610	2967	59561											
IFLTD1	160492	broad.mit.edu	37	chr12	25672099	25672099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcacctctgtccatagGcagcttttgatccaagataa	7	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25672099	T	T	25672099	1	4	54	0	1	0	0	0	0	0	0	0	7600	1218	42	3		3	IFLTD1	12	25672099	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	273814	25672099	108179796	2968	59562											
ITPR2	3709	broad.mit.edu	37	chr12	26664285	26664285	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagcccagtttgtgccctcTggttgcacactcatacagta	8	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26664285	C	C	26664285	1	2	54	0	1	0	0	0	0	0	0	0	7991	1595	55	5		5	ITPR2	12	26664285	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	992186	26664285	107187610	2969	59563											
ITPR2	3709	broad.mit.edu	37	chr12	26797215	26797215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacagcatgcactgtgtcCagcaaagctgtgggggagtt	13	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26797215	A	A	26797215	1	1	54	0	1	0	0	0	0	0	0	0	7991	609	21	2		2	ITPR2	12	26797215	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	132930	26797215	107054680	2970	59564											
C12orf11	55726	broad.mit.edu	37	chr12	27078781	27078781	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacatttttgaatctgcatGagacttaaagagaaattttt	6	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27078781	A	A	27078781	2	1	54	1	0	0	0	0	0	0	0	1	1688	1277	45	4		4	C12orf11	12	27078781	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	281566	27078781	106773114	2971	59565											
TM7SF3	51768	broad.mit.edu	37	chr12	27148212	27148212	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggggcacactgaccatcctCtgcagatgcttcagcaacat	9	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27148212	G	G	27148212	3	3	54	1	0	0	0	0	1	0	0	0	16098	912	32	4	1096	4	TM7SF3	12	27148212	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	69431	27148212	106703683	2972	59566											
PPFIBP1	8496	broad.mit.edu	37	chr12	27788039	27788039	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgcttgttgaatggcttcaGagtcaaatggtagggtctgc	13	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27788039	C	C	27788039	3	2	54	1	0	0	0	0	1	0	0	0	12409	933	33	4	267	4	PPFIBP1	12	27788039	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	639827	27788039	106063856	2973	59567											
PPFIBP1	8496	broad.mit.edu	37	chr12	27803204	27803204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggcagttaattactacGtaccatcatcctacttcatt	6	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27803204	T	T	27803204	1	4	54	0	1	0	0	0	0	0	0	0	12409	1160	40	3		3	PPFIBP1	12	27803204	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15165	27803204	106048691	2974	59568											
CCDC91	55297	broad.mit.edu	37	chr12	28678680	28678680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtctatctcatttcttaGgtctattagtaattgtttta	6	6	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28678680	T	T	28678680	1	4	54	0	1	0	0	0	0	0	0	0	2898	1015	35	2		2	CCDC91	12	28678680	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	875476	28678680	105173215	2975	59569											
ERGIC2	51290	broad.mit.edu	37	chr12	29496337	29496337	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctactgtaaaagaaggacatCcacatttccttatgaactgt	6	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29496337	G	G	29496337	1	3	54	0	1	0	0	0	0	0	0	0	5266	870	30	4		4	ERGIC2	12	29496337	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	817657	29496337	104355558	2976	59570											
OVCH1	341350	broad.mit.edu	37	chr12	29597287	29597287	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctatatgccttttcagatCaaggtaaacagctctcttcc	5	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29597287	T	T	29597287	1	4	54	0	1	0	0	0	0	0	0	0	11417	841	29	4		4	OVCH1	12	29597287	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	100950	29597287	104254608	2977	59571											
OVCH1	341350	broad.mit.edu	37	chr12	29624996	29624996	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatagcttgccatagttaacAgtagtgattctcaaacatca	6	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29624996	G	G	29624996	1	3	54	0	1	0	0	0	0	0	0	0	11417	203	7	5		5	OVCH1	12	29624996	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	27709	29624996	104226899	2978	59572											
OVCH1	341350	broad.mit.edu	37	chr12	29640196	29640196	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctagattttagtgtcacaGagccaaattaactctccaag	6	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29640196	T	T	29640196	1	4	54	0	1	0	0	0	0	0	0	0	11417	957	33	3		3	OVCH1	12	29640196	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15200	29640196	104211699	2979	59573											
TMTC1	83857	broad.mit.edu	37	chr12	29790070	29790070	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacacacaaaagaacaacagTaacaacaaaaacaaagaagc	4	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29790070	A	A	29790070	1	1	54	0	1	0	0	0	0	0	0	0	16383	1653	57	5		5	TMTC1	12	29790070	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	149874	29790070	104061825	2980	59574											
TMTC1	83857	broad.mit.edu	37	chr12	29906108	29906108	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaccacctagtgctaagAtgtttattctaaattagcag	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29906108	C	C	29906108	1	2	54	0	1	0	0	0	0	0	0	0	16383	348	12	5		5	TMTC1	12	29906108	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	116038	29906108	103945787	2981	59575											
FGD4	121512	broad.mit.edu	37	chr12	32761011	32761011	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattgcctcctgattccctgGactggaatgatgctaaaagt	9	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32761011	A	A	32761011	3	1	54	1	0	0	0	0	1	0	0	0	5892	1174	41	4	1136	4	FGD4	12	32761011	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2854903	32761011	101090884	2982	59576											
SYT10	341359	broad.mit.edu	37	chr12	33579212	33579212	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggctcaatagcttttaCggctggcttttcattttcct	8	10	2	0	rs143923961		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33579212	T	T	33579212	3	4	54	1	0	0	0	0	1	0	0	0	15585	536	19	4	1225	4	SYT10	12	33579212	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	818201	33579212	100272683	2983	59577											
CPNE8	144402	broad.mit.edu	37	chr12	39268101	39268101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttattctcaaagtgctcagCaagtccctctttacccacag	5	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39268101	A	A	39268101	1	1	54	0	1	0	0	0	0	0	0	0	3850	725	25	3		3	CPNE8	12	39268101	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5688889	39268101	94583794	2984	59578											
KIF21A	55605	broad.mit.edu	37	chr12	39756766	39756766	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattcacacatttgagatccTtaacagtataaggattagtt	6	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39756766	G	G	39756766	1	3	54	0	1	0	0	0	0	0	0	0	8358	1624	56	5		5	KIF21A	12	39756766	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	488665	39756766	94095129	2985	59579											
ABCD2	225	broad.mit.edu	37	chr12	39994514	39994514	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaagatgcattccttctTctacctaaagtaagaaataa	4	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39994514	A	A	39994514	3	1	54	1	0	0	0	0	1	0	0	0	61	1783	62	5	737	5	ABCD2	12	39994514	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	237748	39994514	93857381	2986	59580											
C12orf40	283461	broad.mit.edu	37	chr12	40020138	40020138	+	5'UTR	DEL	G	-	-													agtgtcaaaagatttgggaaGatgaattgggtcggggggtc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40020138	-	-	40020138	6	5	54	0	1	1	0	1	0	0	0	0	1699	957	33	0		0	C12orf40	12	40020138	5'UTR	DEL	G	TCGA-17-Z022-01A-01W-0746-08	25624	40020138	93831757	2987	59581											
LRRK2	120892	broad.mit.edu	37	chr12	40619023	40619026	+	Frame_Shift_Del	DEL	ACAG	-	-													aacaatgtccaggaaggaaaAcagatagaaacgctggtcca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40619026	-	-	40619023	7	5	54	1	0	1	0	1	0	0	0	0	9120	40	2	0	92	0	LRRK2	12	40619023	Frame_Shift_Del	DEL	ACAG	TCGA-17-Z022-01A-01W-0746-08	598885	40619023	93232872	2988	59582											
CNTN1	1272	broad.mit.edu	37	chr12	41383789	41383789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggttggggtcagaagtgCcaccgagatttgcagaagtg	16	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41383789	A	A	41383789	1	1	54	0	1	0	0	0	0	0	0	0	3672	754	26	3		3	CNTN1	12	41383789	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	764766	41383789	92468106	2989	59583											
PDZRN4	29951	broad.mit.edu	37	chr12	41953079	41953079	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaccaggaaccaacttcctGagaatagttgtggttctcct	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41953079	C	C	41953079	1	2	54	0	1	0	0	0	0	0	0	0	11804	1305	45	4		4	PDZRN4	12	41953079	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	569290	41953079	91898816	2990	59584											
PPHLN1	51535	broad.mit.edu	37	chr12	42681187	42681187	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcctacatcccggatgacGaggtgagctgcccttcgccc	10	15	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42681187	T	T	42681187	1	4	54	0	1	0	0	0	0	0	0	0	12411	1073	37	3		3	PPHLN1	12	42681187	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	728108	42681187	91170708	2991	59585											
PPHLN1	51535	broad.mit.edu	37	chr12	42778772	42778772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggtgcctcctacaaacGgcagaatgaaggaaatcctg	10	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42778772	T	T	42778772	3	4	54	1	0	0	0	0	1	0	0	0	12411	1116	39	1	585	1	PPHLN1	12	42778772	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	97585	42778772	91073123	2992	59586											
TMEM117	84216	broad.mit.edu	37	chr12	44781886	44781886	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaaccaaatattttatAaacctcatgaatatgggcaa	7	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44781886	T	T	44781886	4	4	54	1	0	0	0	0	0	1	0	0	16154	363	13	5	1002	5	TMEM117	12	44781886	Nonsense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2003114	44781886	89070009	2993	59587											
NELL2	4753	broad.mit.edu	37	chr12	44951165	44951165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagttaagggtagagacgGggcagtaacaggatttggag	16	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44951165	T	T	44951165	1	4	54	0	1	0	0	0	0	0	0	0	10429	1247	43	2		2	NELL2	12	44951165	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	169279	44951165	88900730	2994	59588											
NELL2	4753	broad.mit.edu	37	chr12	45054187	45054187	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accagagaaaaattcccattGatggggtcccaaggaaataa	9	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45054187	T	T	45054187	1	4	54	0	1	0	0	0	0	0	0	0	10429	1305	45	3		3	NELL2	12	45054187	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	103022	45054187	88797708	2995	59589											
NELL2	4753	broad.mit.edu	37	chr12	45072544	45072544	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggagaggtcgatagaattAattgctgcctagaagccaag	13	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45072544	T	T	45072544	1	4	54	0	1	0	0	0	0	0	0	0	10429	377	13	5		5	NELL2	12	45072544	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	18357	45072544	88779351	2996	59590											
NELL2	4753	broad.mit.edu	37	chr12	45072793	45072793	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagggatgtagagttaagGgagagattaagcataattaa	13	1	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45072793	A	A	45072793	1	1	54	0	1	0	0	0	0	0	0	0	10429	1247	43	4		4	NELL2	12	45072793	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	249	45072793	88779102	2997	59591											
NELL2	4753	broad.mit.edu	37	chr12	45073002	45073002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaaagggtggaagtaaGgcatgctggcttatgaaatt	15	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45073002	T	T	45073002	1	4	54	0	1	0	0	0	0	0	0	0	10429	1015	35	2		2	NELL2	12	45073002	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	209	45073002	88778893	2998	59592											
NELL2	4753	broad.mit.edu	37	chr12	45291178	45291178	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacacagaaggcaggtgatAcctgcatttccaactgaggt	10	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45291178	T	T	45291178	1	4	54	0	1	0	0	0	0	0	0	0	10429	406	14	5		5	NELL2	12	45291178	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	218176	45291178	88560717	2999	59593											
DBX2	440097	broad.mit.edu	37	chr12	45410244	45410244	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttgagtgctgttgggggAcgtcccatattgaaggacat	14	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45410244	T	T	45410244	3	4	54	1	0	0	0	0	1	0	0	0	4293	275	10	5	178	5	DBX2	12	45410244	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	119066	45410244	88441651	3000	59594											
ANO6	196527	broad.mit.edu	37	chr12	45752951	45752951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttaaagtgcacaatttaGgtgtacccctttcccttagc	6	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45752951	T	T	45752951	1	4	54	0	1	0	0	0	0	0	0	0	701	1015	35	2		2	ANO6	12	45752951	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	342707	45752951	88098944	3001	59595											
ANO6	196527	broad.mit.edu	37	chr12	45754297	45754297	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaattggaagagacacattCaaaccatagcagatacattg	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45754297	T	T	45754297	1	4	54	0	1	0	0	0	0	0	0	0	701	841	29	4		4	ANO6	12	45754297	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1346	45754297	88097598	3002	59596											
SFRS2IP	9169	broad.mit.edu	37	chr12	46316032	46316032	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcttaaagggattaaagcCaaaatagaaagctttgtgaa	9	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46316032	T	T	46316032	1	4	54	0	1	0	0	0	0	0	0	0	14290	609	21	4		4	SFRS2IP	12	46316032	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	561735	46316032	87535863	3003	59597											
SLC38A4	55089	broad.mit.edu	37	chr12	47168833	47168833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtcttatgtacttactGggaagaggacaatgggcaca	11	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47168833	T	T	47168833	3	4	54	1	0	0	0	0	1	0	0	0	14720	1362	47	2	361	2	SLC38A4	12	47168833	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	852801	47168833	86683062	3004	59598											
HDAC7	51564	broad.mit.edu	37	chr12	48183457	48183457	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatctcaacctggttcccaGagccctcaatttcccctcca	4	18	2	1	rs150262999	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48183457	C	C	48183457	1	2	54	0	1	0	0	0	0	0	0	0	7079	957	33	4		4	HDAC7	12	48183457	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1014624	48183457	85668438	3005	59599											
COL2A1	1280	broad.mit.edu	37	chr12	48372193	48372193	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcggcaccctgagagaggaGaggcaggagatgagaactga	16	7	0	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48372193	T	T	48372193	1	4	54	0	1	0	0	0	0	0	0	0	3719	957	33	3		3	COL2A1	12	48372193	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	188736	48372193	85479702	3006	59600											
PFKM	5213	broad.mit.edu	37	chr12	48509866	48509866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccaatttgttcacatccGctgtaatacttttctttctt	4	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48509866	T	T	48509866	1	4	54	0	1	0	0	0	0	0	0	0	11860	1102	38	3		3	PFKM	12	48509866	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	137673	48509866	85342029	3007	59601											
WNT10B	7480	broad.mit.edu	37	chr12	49361604	49361604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatacaaaactgaggctGggtgacttgctgatggtgag	14	6	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49361604	T	T	49361604	1	4	54	0	1	0	0	0	0	0	0	0	17510	1363	47	2		2	WNT10B	12	49361604	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	851738	49361604	84490291	3008	59602											
MLL2	8085	broad.mit.edu	37	chr12	49422638	49422638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagcagagactgtgagCatgactgacacctcacttcc	10	13	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49422638	A	A	49422638	3	1	54	1	0	0	0	0	1	0	0	0	9714	710	25	3	2298	3	MLL2	12	49422638	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	61034	49422638	84429257	3009	59603											
TROAP	10024	broad.mit.edu	37	chr12	49718101	49718101	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagttggagaccagcctggAtgacagagggagatcccatc	15	9	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49718101	T	T	49718101	1	4	54	0	1	0	0	0	0	0	0	0	16700	348	12	5		5	TROAP	12	49718101	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	295463	49718101	84133794	3010	59604											
FMNL3	91010	broad.mit.edu	37	chr12	50043862	50043862	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcatctgtcacagcacCagcaatgatcccgggggaac	10	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50043862	T	T	50043862	1	4	54	0	1	0	0	0	0	0	0	0	6011	609	21	4		4	FMNL3	12	50043862	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	325761	50043862	83808033	3011	59605											
NCKAP5L	57701	broad.mit.edu	37	chr12	50195708	50195708	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggttctgccgttccaggtCaaacactctcttcttcagct	7	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50195708	G	G	50195708	3	3	54	1	0	0	0	0	1	0	0	0	10319	826	29	4	3762	4	NCKAP5L	12	50195708	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	151846	50195708	83656187	3012	59606											
RACGAP1	29127	broad.mit.edu	37	chr12	50390783	50390784	+	Intron	DEL	AA	-	-													taagcctttgaaaggcgaatAaagaggccataaaacaatga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50390784	-	-	50390783	6	5	54	0	1	1	0	1	0	0	0	0	13085	377	13	0		0	RACGAP1	12	50390783	Intron	DEL	AA	TCGA-17-Z022-01A-01W-0746-08	195075	50390783	83461112	3013	59607											
ACCN2	41	broad.mit.edu	37	chr12	50471326	50471326	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcacatctctctggctcccActtcctggttcagttactct	5	16	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50471326	T	T	50471326	1	4	54	0	1	0	0	0	0	0	0	0	129	174	6	5		5	ACCN2	12	50471326	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	80543	50471326	83380569	3014	59608											
ACCN2	41	broad.mit.edu	37	chr12	50472760	50472760	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggagtgtgcagatcctgctCtgggtgagcgcccctggcct	15	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50472760	G	G	50472760	3	3	54	1	0	0	0	0	1	0	0	0	129	912	32	4	1070	4	ACCN2	12	50472760	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1434	50472760	83379135	3015	59609											
SMARCD1	6602	broad.mit.edu	37	chr12	50480065	50480065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagggatggatcagtcccGcaagagacctgcccctcagc	12	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50480065	T	T	50480065	3	4	54	1	0	0	0	0	1	0	0	0	14891	1087	38	3	305	3	SMARCD1	12	50480065	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7305	50480065	83371830	3016	59610											
GPD1	2819	broad.mit.edu	37	chr12	50497855	50497855	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctagcaagaaagtctgcAttgtaggctccgggaactgg	14	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50497855	G	G	50497855	3	3	54	1	0	0	0	0	1	0	0	0	6669	217	8	5	24	5	GPD1	12	50497855	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	17790	50497855	83354040	3017	59611											
SLC11A2	4891	broad.mit.edu	37	chr12	51389662	51389662	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcagctgagagatttaGgggacaaaagttgaccagac	14	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51389662	A	A	51389662	1	1	54	0	1	0	0	0	0	0	0	0	14494	1015	35	4		4	SLC11A2	12	51389662	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	891807	51389662	82462233	3018	59612											
BIN2	51411	broad.mit.edu	37	chr12	51707519	51707519	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttggtggagatgtttgcCagtttgcagaacttattgtt	13	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51707519	T	T	51707519	1	4	54	0	1	0	0	0	0	0	0	0	1439	609	21	4		4	BIN2	12	51707519	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	317857	51707519	82144376	3019	59613											
SLC4A8	9498	broad.mit.edu	37	chr12	51857509	51857509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgggcggtaagtcctgGgacgtttcacagcgatgctg	15	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51857509	T	T	51857509	1	4	54	0	1	0	0	0	0	0	0	0	14773	1247	43	2		2	SLC4A8	12	51857509	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	149990	51857509	81994386	3020	59614											
ACVR1B	91	broad.mit.edu	37	chr12	52363986	52363986	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaggtgttcctagtgtgGccgtggccctgctggctctg	15	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52363986	T	T	52363986	1	4	54	0	1	0	0	0	0	0	0	0	221	1218	42	3		3	ACVR1B	12	52363986	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	506477	52363986	81487909	3021	59615											
KRT81	3887	broad.mit.edu	37	chr12	52681596	52681596	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgcaggttgtacagtgctCagcctgtgcagccacacatg	11	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52681596	G	G	52681596	1	3	54	0	1	0	0	0	0	0	0	0	8566	841	29	4		4	KRT81	12	52681596	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	317610	52681596	81170299	3022	59616											
KRT6B	3854	broad.mit.edu	37	chr12	52842880	52842880	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaagaaacttgaggaaaaGttgatgttatgtggtgggtg	14	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52842880	C	C	52842880	1	2	54	0	1	0	0	0	0	0	0	0	8552	1044	36	4		4	KRT6B	12	52842880	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	161284	52842880	81009015	3023	59617											
KRT6C	286887	broad.mit.edu	37	chr12	52865661	52865661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagagatgagttttgctaCtactaaatttgccacttctt	6	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52865661	A	A	52865661	1	1	54	0	1	0	0	0	0	0	0	0	8553	580	20	3		3	KRT6C	12	52865661	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22781	52865661	80986234	3024	59618											
KRT5	3852	broad.mit.edu	37	chr12	52908971	52908971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacctccaccgaggccacCgccatagccactgccactgc	8	19	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52908971	A	A	52908971	3	1	54	1	0	0	0	0	1	0	0	0	8550	652	23	1	248	1	KRT5	12	52908971	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43310	52908971	80942924	3025	59619											
KRT5	3852	broad.mit.edu	37	chr12	52911837	52911837	+	Intron	DEL	G	-	-													cctactcaagtgagctccacGcttagagagcatagctgcag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52911837	-	-	52911837	6	5	54	0	1	1	0	1	0	0	0	0	8550	1102	38	0		0	KRT5	12	52911837	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	2866	52911837	80940058	3026	59620											
KRT71	112802	broad.mit.edu	37	chr12	52943828	52943828	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctcttcttgtagtccTccactacgtcccgcacattc	4	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52943828	C	C	52943828	3	2	54	1	0	0	0	0	1	0	0	0	8555	1551	54	5	962	5	KRT71	12	52943828	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	31991	52943828	80908067	3027	59621											
KRT71	112802	broad.mit.edu	37	chr12	52946607	52946607	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggccccagggccacactGccaaacatgcttccagcaaa	8	16	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52946607	T	T	52946607	2	4	54	1	0	0	0	0	0	0	0	1	8555	1306	46	3		3	KRT71	12	52946607	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2779	52946607	80905288	3028	59622											
KRT1	3848	broad.mit.edu	37	chr12	53068775	53068775	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagcagggtcatagccAggggactgagattgccactg	13	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53068775	C	C	53068775	1	2	54	0	1	0	0	0	0	0	0	0	8518	203	7	5		5	KRT1	12	53068775	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	122168	53068775	80783120	3029	59623											
KRT3	3850	broad.mit.edu	37	chr12	53185454	53185454	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaatcatcccaggtgcCagcatccatgaccatcccac	6	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53185454	T	T	53185454	1	4	54	0	1	0	0	0	0	0	0	0	8537	609	21	4		4	KRT3	12	53185454	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	116679	53185454	80666441	3030	59624											
KRT4	3851	broad.mit.edu	37	chr12	53204583	53204583	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcggctgctgtgcgtttgTtgatctcctcttcatacctg	9	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53204583	A	A	53204583	3	1	54	1	0	0	0	0	1	0	0	0	8548	1725	60	5	895	5	KRT4	12	53204583	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	19129	53204583	80647312	3031	59625											
KRT8	3856	broad.mit.edu	37	chr12	53293563	53293563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacccggcccatacctggCctttgaggccctcaatctca	7	18	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53293563	A	A	53293563	3	1	54	1	0	0	0	0	1	0	0	0	8564	739	26	3	490	3	KRT8	12	53293563	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	88980	53293563	80558332	3032	59626											
SOAT2	8435	broad.mit.edu	37	chr12	53514577	53514577	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccaaccaccaggcatcttCatgctgctgctcatcttctt	5	17	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53514577	T	T	53514577	2	4	54	1	0	0	0	0	0	0	0	1	15025	825	29	4		4	SOAT2	12	53514577	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	221014	53514577	80337318	3033	59627											
ITGB7	3695	broad.mit.edu	37	chr12	53589337	53589337	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagggcatatgggggacgGagaatgtatctttgggggaa	19	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53589337	A	A	53589337	1	1	54	0	1	0	0	0	0	0	0	0	7970	1189	41	4		4	ITGB7	12	53589337	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	74760	53589337	80262558	3034	59628											
SP7	121340	broad.mit.edu	37	chr12	53732307	53732307	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaggaagaaactgaaggGgaaaaggaggaaggatggaa	17	1	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53732307	T	T	53732307	1	4	54	0	1	0	0	0	0	0	0	0	15083	1247	43	2		2	SP7	12	53732307	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	142970	53732307	80119588	3035	59629											
CALCOCO1	57658	broad.mit.edu	37	chr12	54113367	54113367	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatattccacttttccactCtgactaatcctgatttaggt	4	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54113367	G	G	54113367	1	3	54	0	1	0	0	0	0	0	0	0	2603	928	32	4		4	CALCOCO1	12	54113367	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	381060	54113367	79738528	3036	59630											
HOXC8	3224	broad.mit.edu	37	chr12	54401821	54401821	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccccaccaggctgagctGgcatttcctatggcatgggg	15	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54401821	T	T	54401821	1	4	54	0	1	0	0	0	0	0	0	0	7383	1363	47	2		2	HOXC8	12	54401821	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	288454	54401821	79450074	3037	59631											
HOXC8	3224	broad.mit.edu	37	chr12	54405529	54405529	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctctcaccacactcccacCtccctgcttctctggtattt	4	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54405529	T	T	54405529	1	4	54	0	1	0	0	0	0	0	0	0	7383	696	24	4		4	HOXC8	12	54405529	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3708	54405529	79446366	3038	59632											
HOXC4	3221	broad.mit.edu	37	chr12	54448886	54448886	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcacccccggccggcgctgCgcccagcaccctttcggcag	12	20	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54448886	G	G	54448886	3	3	54	1	0	0	0	0	1	0	0	0	7380	768	27	4	698	4	HOXC4	12	54448886	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43357	54448886	79403009	3039	59633											
NCKAP1L	3071	broad.mit.edu	37	chr12	54912553	54912553	+	Intron	SNP	G	A	A													gggggaggcaggacatatgtGaggatgaacatcttttatcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54912553	A	A	54912553	1	1	54	0	1	0	0	0	0	0	0	0	10317	1305	45	4		4	NCKAP1L	12	54912553	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	463667	54912553	78939342	3040	59634	281	2									
NCKAP1L	3071	broad.mit.edu	37	chr12	54912556	54912556	+	Intron	SNP	G	A	A													ggaggcaggacatatgtgagGatgaacatcttttatccgga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54912556	A	A	54912556	1	1	54	0	1	0	0	0	0	0	0	0	10317	1189	41	4		4	NCKAP1L	12	54912556	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3	54912556	78939339	3041	59635	281	2									
NCKAP1L	3071	broad.mit.edu	37	chr12	54915041	54915041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtagactcagccctctctGtttcactctcccctctgcca	6	17	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54915041	T	T	54915041	1	4	54	0	1	0	0	0	0	0	0	0	10317	1392	48	3		3	NCKAP1L	12	54915041	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2485	54915041	78936854	3042	59636											
NCKAP1L	3071	broad.mit.edu	37	chr12	54917263	54917263	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagactcccagaaaaggagAgcccgagagggacaagccag	14	11	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54917263	G	G	54917263	3	3	54	1	0	0	0	0	1	0	0	0	10317	304	11	5	2038	5	NCKAP1L	12	54917263	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2222	54917263	78934632	3043	59637											
PDE1B	5153	broad.mit.edu	37	chr12	54948755	54948755	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattcaagaggtaggaatatGaattacctaataggtttgag	11	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54948755	T	T	54948755	1	4	54	0	1	0	0	0	0	0	0	0	11728	1305	45	3		3	PDE1B	12	54948755	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31492	54948755	78903140	3044	59638											
DCD	117159	broad.mit.edu	37	chr12	55044629	55044629	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagtattgacattcacccAgttatctaaatagagatctg	6	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55044629	G	G	55044629	1	3	54	0	1	0	0	0	0	0	0	0	4316	203	7	5		5	DCD	12	55044629	5'Flank	SNP	A	TCGA-17-Z022-01A-01W-0746-08	95874	55044629	78807266	3045	59639											
OR6C3	254786	broad.mit.edu	37	chr12	55726036	55726036	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattttcccctcttacaactAtcttgttcagatacatggct	4	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55726036	G	G	55726036	2	3	54	1	0	0	0	0	0	0	0	1	11286	436	16	5		5	OR6C3	12	55726036	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	681407	55726036	78125859	3046	59640											
METTL7B	196410	broad.mit.edu	37	chr12	56077939	56077939	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagagggacctagcagaatGagagaagacattcatgtacc	12	7	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56077939	C	C	56077939	1	2	54	0	1	0	0	0	0	0	0	0	9599	1305	45	4		4	METTL7B	12	56077939	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	351903	56077939	77773956	3047	59641											
ITGA7	3679	broad.mit.edu	37	chr12	56082567	56082567	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaaggaggaggagaaatGagtcctggaggggctttgga	20	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56082567	A	A	56082567	1	1	54	0	1	0	0	0	0	0	0	0	7951	1305	45	4		4	ITGA7	12	56082567	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4628	56082567	77769328	3048	59642											
DNAJC14	85406	broad.mit.edu	37	chr12	56217010	56217010	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgtaagtcagaaggtattGagggagggacaaaggaagac	15	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56217010	C	C	56217010	1	2	54	0	1	0	0	0	0	0	0	0	4673	1305	45	4		4	DNAJC14	12	56217010	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	134443	56217010	77634885	3049	59643											
SMARCC2	6601	broad.mit.edu	37	chr12	56578915	56578915	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttgtgaagaggcaataatCtagtgagtggtatagctcag	12	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56578915	G	G	56578915	1	3	54	0	1	0	0	0	0	0	0	0	14890	928	32	4		4	SMARCC2	12	56578915	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	361905	56578915	77272980	3050	59644											
SMARCC2	6601	broad.mit.edu	37	chr12	56579949	56579949	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatctcaccatccctggtCactcttgaatttgtaggcag	7	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56579949	T	T	56579949	3	4	54	1	0	0	0	0	1	0	0	0	14890	826	29	4	3538	4	SMARCC2	12	56579949	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1034	56579949	77271946	3051	59645											
SMARCC2	6601	broad.mit.edu	37	chr12	56580009	56580009	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagcctcccgctttgaaatCtaggaaacatttgatctaca	8	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56580009	G	G	56580009	3	3	54	1	0	0	0	0	1	0	0	0	14890	913	32	4	3598	4	SMARCC2	12	56580009	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	60	56580009	77271886	3052	59646											
SMARCC2	6601	broad.mit.edu	37	chr12	56580928	56580928	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcttcagtttgaaggattCaccaccaccaccccccaccc	4	19	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56580928	G	G	56580928	1	3	54	0	1	0	0	0	0	0	0	0	14890	841	29	4		4	SMARCC2	12	56580928	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	919	56580928	77270967	3053	59647											
PAN2	9924	broad.mit.edu	37	chr12	56719270	56719270	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaagaggtaaccttgttgGatgtcttgtcatctttggct	12	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56719270	T	T	56719270	1	4	54	0	1	0	0	0	0	0	0	0	11508	1189	41	3		3	PAN2	12	56719270	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	138342	56719270	77132625	3054	59648											
STAT2	6773	broad.mit.edu	37	chr12	56744319	56744319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggttcaaacccgacttgagCtcactagctatgtggccttg	10	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56744319	A	A	56744319	1	1	54	0	1	0	0	0	0	0	0	0	15383	812	28	3		3	STAT2	12	56744319	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25049	56744319	77107576	3055	59649											
GLS2	27165	broad.mit.edu	37	chr12	56873058	56873058	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaataaagaaggttgagTggtcttcaggtttgggatca	15	3	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56873058	G	G	56873058	1	3	54	0	1	0	0	0	0	0	0	0	6528	1711	59	5		5	GLS2	12	56873058	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	128739	56873058	76978837	3056	59650											
ATP5B	506	broad.mit.edu	37	chr12	57037874	57037874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtcttacctcccctttctTacataaatcagataaactat	2	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57037874	A	A	57037874	1	1	54	0	1	0	0	0	0	0	0	0	1152	1769	61	5		5	ATP5B	12	57037874	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	164816	57037874	76814021	3057	59651											
SDR9C7	121214	broad.mit.edu	37	chr12	57327883	57327883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcctcagtgaagcaagCagccagcacctgcatgcccc	8	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57327883	A	A	57327883	3	1	54	1	0	0	0	0	1	0	0	0	14087	710	25	3	794	3	SDR9C7	12	57327883	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	290009	57327883	76524012	3058	59652											
MYO1A	4640	broad.mit.edu	37	chr12	57436907	57436907	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtcaaagaggcggctgtaGatgttcttagccagggcgtc	14	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57436907	C	C	57436907	3	2	54	1	0	0	0	0	1	0	0	0	10162	932	33	4	2152	4	MYO1A	12	57436907	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	109024	57436907	76414988	3059	59653											
MYO1A	4640	broad.mit.edu	37	chr12	57440758	57440759	+	Intron	DNP	CC	TA	TA													ttagcttcttcctcttctcaCcaccctgcctggaaggggtc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	57440759	TA	TA	57440758	1	4	54	0	1	0	0	0	0	0	0	0	10162	522	18	4		4	MYO1A	12	57440758	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	3851	57440758	76411137	3060	59654											
MYO1A	4640	broad.mit.edu	37	chr12	57441514	57441514	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccaatgcgtagcttgtgggGaggaagtgggcaatgactat	16	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57441514	C	C	57441514	1	2	54	0	1	0	0	0	0	0	0	0	10162	1189	41	4		4	MYO1A	12	57441514	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	756	57441514	76410381	3061	59655											
TMEM194A	23306	broad.mit.edu	37	chr12	57472331	57472331	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agagtaacggcccgcgccctCgggacaatcccttttccaaa	9	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57472331	G	G	57472331	1	3	54	0	1	0	0	0	0	0	0	0	16239	899	31	4		4	TMEM194A	12	57472331	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	30817	57472331	76379564	3062	59656											
GLI1	2735	broad.mit.edu	37	chr12	57865110	57865110	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaatatctccagtcaGgcccctatacccagccaccc	4	21	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57865110	C	C	57865110	3	2	54	1	0	0	0	0	1	0	0	0	6501	1000	35	4	2629	4	GLI1	12	57865110	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	392779	57865110	75986785	3063	59657											
ARHGAP9	64333	broad.mit.edu	37	chr12	57872366	57872366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaagtcttcctgggagaggGatcttccgcttggtccttcc	12	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57872366	T	T	57872366	3	4	54	1	0	0	0	0	1	0	0	0	891	1174	41	3	1768	3	ARHGAP9	12	57872366	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7256	57872366	75979529	3064	59658											
KIF5A	3798	broad.mit.edu	37	chr12	57974740	57974740	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttggcttgccccatagcTggtacgtgacaatgcagatc	10	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57974740	C	C	57974740	3	2	54	1	0	0	0	0	1	0	0	0	8375	1594	55	5	2634	5	KIF5A	12	57974740	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	102374	57974740	75877155	3065	59659											
GEFT	115557	broad.mit.edu	37	chr12	58007620	58007620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattttcaggaggtgcctgGgcgctcctctgtcccacctc	10	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58007620	T	T	58007620	1	4	54	0	1	0	0	0	0	0	0	0	6392	1247	43	2		2	GEFT	12	58007620	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32880	58007620	75844275	3066	59660											
SLC26A10	65012	broad.mit.edu	37	chr12	58018324	58018324	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcagtagtgaccctgagTgtggatttgggcctggctgt	17	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58018324	A	A	58018324	1	1	54	0	1	0	0	0	0	0	0	0	14629	1711	59	5		5	SLC26A10	12	58018324	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	10704	58018324	75833571	3067	59661											
FAM19A2	338811	broad.mit.edu	37	chr12	62147536	62147536	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccactattgaagctataagaGagaaaaaaaattgactcaac	6	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62147536	T	T	62147536	1	4	54	0	1	0	0	0	0	0	0	0	5579	957	33	3		3	FAM19A2	12	62147536	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4129212	62147536	71704359	3068	59662											
USP15	9958	broad.mit.edu	37	chr12	62790400	62790400	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcagttcaaggcctagtaGggaatgttgtcccatttaga	10	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62790400	A	A	62790400	1	1	54	0	1	0	0	0	0	0	0	0	17172	1015	35	4		4	USP15	12	62790400	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	642864	62790400	71061495	3069	59663											
MON2	23041	broad.mit.edu	37	chr12	62918364	62918364	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagataaaccacagtggctaCgagctgttgcggtggaatca	12	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62918364	A	A	62918364	2	1	54	1	0	0	0	0	0	0	0	1	9794	528	19	3		3	MON2	12	62918364	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	127964	62918364	70933531	3070	59664											
DPY19L2	283417	broad.mit.edu	37	chr12	64014966	64014966	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctgtacatcccgcacatGtaccccagaacttaaaataa	4	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64014966	A	A	64014966	1	1	54	0	1	0	0	0	0	0	0	0	4781	1392	48	4		4	DPY19L2	12	64014966	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1096602	64014966	69836929	3071	59665											
HMGA2	8091	broad.mit.edu	37	chr12	66311521	66311521	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgcagttgtggagccctaGatctgtgggtttggccctta	14	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66311521	A	A	66311521	1	1	54	0	1	0	0	0	0	0	0	0	7291	957	33	4		4	HMGA2	12	66311521	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2296555	66311521	67540374	3072	59666											
TMBIM4	51643	broad.mit.edu	37	chr12	66539516	66539517	+	Intron	DNP	TT	AA	AA													tgatctcttattaccctccaTtttaaaagacagtacccaaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	66539517	AA	AA	66539516	1	1	54	0	1	0	0	0	0	0	0	0	16105	1508	52	5		5	TMBIM4	12	66539516	Intron	DNP	TT	TCGA-17-Z022-01A-01W-0746-08	227995	66539516	67312379	3073	59667											
LRRC10	376132	broad.mit.edu	37	chr12	70004028	70004028	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacggatgctgttccagtcCacatcaatcacctccaggaa	7	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70004028	A	A	70004028	2	1	54	1	0	0	0	0	0	0	0	1	9054	581	21	2		2	LRRC10	12	70004028	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3464512	70004028	63847867	3074	59668											
PTPRB	5787	broad.mit.edu	37	chr12	70938257	70938257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaataaatgttccccccacCatcagccaatatctccccat	2	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70938257	A	A	70938257	1	1	54	0	1	0	0	0	0	0	0	0	12904	609	21	2		2	PTPRB	12	70938257	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	934229	70938257	62913638	3075	59669											
PTPRB	5787	broad.mit.edu	37	chr12	70970307	70970307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggactgaaccaccttgccGtcatgagacaatgttacctc	9	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70970307	C	C	70970307	3	2	54	1	0	0	0	0	1	0	0	0	12904	1136	40	4	4046	4	PTPRB	12	70970307	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32050	70970307	62881588	3076	59670											
PTPRR	5801	broad.mit.edu	37	chr12	71056431	71056431	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatattaatggcttttatTagccatggagtacttttcat	6	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71056431	A	A	71056431	1	1	54	0	1	0	0	0	0	0	0	0	12918	1769	61	5		5	PTPRR	12	71056431	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	86124	71056431	62795464	3077	59671											
PTPRR	5801	broad.mit.edu	37	chr12	71191690	71191690	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctattttttatactctttccCtaggaaattttattcagtcc	3	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71191690	T	T	71191690	1	4	54	0	1	0	0	0	0	0	0	0	12918	696	24	4		4	PTPRR	12	71191690	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	135259	71191690	62660205	3078	59672											
PTPRR	5801	broad.mit.edu	37	chr12	71213050	71213050	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgagattgcaccactgcGctccagcctgggtgacagag	13	12	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71213050	C	C	71213050	1	2	54	0	1	0	0	0	0	0	0	0	12918	1102	38	4		4	PTPRR	12	71213050	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21360	71213050	62638845	3079	59673											
CAPS2	84698	broad.mit.edu	37	chr12	75699433	75699433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcggagaagggcggcgcCcaccaggcccctagcactgc	15	17	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75699433	A	A	75699433	1	1	54	0	1	0	0	0	0	0	0	0	2664	638	22	2		2	CAPS2	12	75699433	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4486383	75699433	58152462	3080	59674											
BBS10	79738	broad.mit.edu	37	chr12	76740736	76740736	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagaaagaccaatgatcctCcggataagagaaacttcttc	9	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76740736	A	A	76740736	2	1	54	1	0	0	0	0	0	0	0	1	1341	842	30	3		3	BBS10	12	76740736	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1041303	76740736	57111159	3081	59675											
OSBPL8	114882	broad.mit.edu	37	chr12	76882857	76882857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaattatataggcaaggCcctaactctcttcaattcta	6	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76882857	A	A	76882857	1	1	54	0	1	0	0	0	0	0	0	0	11377	754	26	3		3	OSBPL8	12	76882857	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	142121	76882857	56969038	3082	59676											
NAV3	89795	broad.mit.edu	37	chr12	78417100	78417100	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctccacttccttattgtcTaccctttgatcactttttca	2	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78417100	C	C	78417100	1	2	54	0	1	0	0	0	0	0	0	0	10279	1537	53	5		5	NAV3	12	78417100	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1534243	78417100	55434795	3083	59677											
NAV3	89795	broad.mit.edu	37	chr12	78479543	78479543	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgagtacagccaagaacAgattatttgggaacacagca	9	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78479543	T	T	78479543	1	4	54	0	1	0	0	0	0	0	0	0	10279	203	7	5		5	NAV3	12	78479543	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	62443	78479543	55372352	3084	59678											
NAV3	89795	broad.mit.edu	37	chr12	78582521	78582521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgccttgtggataccttGttggagataataacatcatc	9	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78582521	T	T	78582521	3	4	54	1	0	0	0	0	1	0	0	0	10279	1377	48	3	6079	3	NAV3	12	78582521	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	102978	78582521	55269374	3085	59679											
SYT1	6857	broad.mit.edu	37	chr12	79325089	79325089	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaaggaaggaaggaaggaGagggagggagggagggaggg	26	0	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79325089	C	C	79325089	1	2	54	0	1	0	0	0	0	0	0	0	15584	957	33	4		4	SYT1	12	79325089	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	742568	79325089	54526806	3086	59680											
SYT1	6857	broad.mit.edu	37	chr12	79366701	79366701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttatgtaaacatcaagaCaatgggcttaaaataattga	6	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79366701	A	A	79366701	1	1	54	0	1	0	0	0	0	0	0	0	15584	493	17	3		3	SYT1	12	79366701	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	41612	79366701	54485194	3087	59681											
SYT1	6857	broad.mit.edu	37	chr12	79670678	79670678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acataaaatgtcaaaacctaAcaatccagaagaagaaggaa	6	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79670678	G	G	79670678	1	3	54	0	1	0	0	0	0	0	0	0	15584	58	2	5		5	SYT1	12	79670678	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	303977	79670678	54181217	3088	59682											
SYT1	6857	broad.mit.edu	37	chr12	79671385	79671385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcttatgaaataataacaCagtggagaatacaaagcaat	8	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79671385	A	A	79671385	1	1	54	0	1	0	0	0	0	0	0	0	15584	493	17	3		3	SYT1	12	79671385	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	707	79671385	54180510	3089	59683											
ACSS3	79611	broad.mit.edu	37	chr12	81579414	81579414	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggaataattttaaccaagGaggtggaaaactatattggt	10	3	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81579414	T	T	81579414	1	4	54	0	1	0	0	0	0	0	0	0	190	1189	41	3		3	ACSS3	12	81579414	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1908029	81579414	52272481	3090	59684											
MGAT4C	25834	broad.mit.edu	37	chr12	86377322	86377322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctttgtaaaggtgtggCagctaggtagcgataggtga	14	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86377322	A	A	86377322	3	1	54	1	0	0	0	0	1	0	0	0	9640	710	25	3	1170	3	MGAT4C	12	86377322	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4797908	86377322	47474573	3091	59685											
CEP290	80184	broad.mit.edu	37	chr12	88486561	88486561	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacactatcagctaattcatCtcttaacatctgttccacct	2	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88486561	A	A	88486561	3	1	54	1	0	0	0	0	1	0	0	0	3283	913	32	3	4185	3	CEP290	12	88486561	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2109239	88486561	45365334	3092	59686											
BTG1	694	broad.mit.edu	37	chr12	92509964	92509964	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacttaatacattcattgatCatccctcctcttggaaaccc	3	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92509964	G	G	92509964	1	3	54	0	1	0	0	0	0	0	0	0	1563	841	29	4		4	BTG1	12	92509964	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4023403	92509964	41341931	3093	59687											
CRADD	8738	broad.mit.edu	37	chr12	94266666	94266666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatatctttgactattctgGctctgtttgtagttctatat	8	6	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94266666	T	T	94266666	1	4	54	0	1	0	0	0	0	0	0	0	3877	1218	42	3		3	CRADD	12	94266666	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1756702	94266666	39585229	3094	59688											
PLXNC1	10154	broad.mit.edu	37	chr12	94585778	94585778	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgtgttcagttatggatttCcacaaaactggcaatcccga	8	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94585778	G	G	94585778	1	3	54	0	1	0	0	0	0	0	0	0	12221	870	30	4		4	PLXNC1	12	94585778	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	319112	94585778	39266117	3095	59689											
PLXNC1	10154	broad.mit.edu	37	chr12	94589138	94589138	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttggtggctattctccgAattcatgtacctccccactg	7	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94589138	T	T	94589138	1	4	54	0	1	0	0	0	0	0	0	0	12221	261	9	5		5	PLXNC1	12	94589138	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3360	94589138	39262757	3096	59690											
TMCC3	57458	broad.mit.edu	37	chr12	94975859	94975859	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgctctccatgcaatgGggggcagttcgagatttcac	12	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94975859	T	T	94975859	2	4	54	1	0	0	0	0	0	0	0	1	16117	1219	43	2		2	TMCC3	12	94975859	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	386721	94975859	38876036	3097	59691											
TMCC3	57458	broad.mit.edu	37	chr12	95008663	95008663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaattctacctcagcctccCgagtagctgggattacagac	9	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95008663	A	A	95008663	1	1	54	0	1	0	0	0	0	0	0	0	16117	667	23	1		1	TMCC3	12	95008663	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	32804	95008663	38843232	3098	59692											
CCDC38	120935	broad.mit.edu	37	chr12	96273931	96273931	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaagtcattttctccccAcattttaattattttatatt	3	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96273931	T	T	96273931	1	4	54	0	1	0	0	0	0	0	0	0	2837	174	6	5		5	CCDC38	12	96273931	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1265268	96273931	37577964	3099	59693											
CCDC38	120935	broad.mit.edu	37	chr12	96300046	96300046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacacgtgaaaaaaccaaCctgttcaaccaatagatttg	6	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96300046	A	A	96300046	1	1	54	0	1	0	0	0	0	0	0	0	2837	522	18	3		3	CCDC38	12	96300046	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	26115	96300046	37551849	3100	59694											
C12orf63	374467	broad.mit.edu	37	chr12	97080384	97080384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgagaaagagtgggagGtgccacactcttttaaacaa	13	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97080384	T	T	97080384	1	4	54	0	1	0	0	0	0	0	0	0	1719	1276	44	3		3	C12orf63	12	97080384	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	780338	97080384	36771511	3101	59695											
APAF1	317	broad.mit.edu	37	chr12	99065530	99065530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaaaccaaagggagtGgtgcgctaactatatcatta	12	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99065530	T	T	99065530	1	4	54	0	1	0	0	0	0	0	0	0	757	1363	47	2		2	APAF1	12	99065530	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1985146	99065530	34786365	3102	59696											
APAF1	317	broad.mit.edu	37	chr12	99106159	99106159	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcaagttagctgctgttgCttaagtccacatcttcagta	8	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99106159	T	T	99106159	2	4	54	1	0	0	0	0	0	0	0	1	757	805	28	4		4	APAF1	12	99106159	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	40629	99106159	34745736	3103	59697											
ANKS1B	56899	broad.mit.edu	37	chr12	99480023	99480023	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagaaaaggacatctaatCagatataggaaaaatgggtg	11	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99480023	T	T	99480023	1	4	54	0	1	0	0	0	0	0	0	0	689	841	29	4		4	ANKS1B	12	99480023	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	373864	99480023	34371872	3104	59698											
ANKS1B	56899	broad.mit.edu	37	chr12	99498989	99498989	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgttatgcaattaacactCtggacaacatgaagacagtt	7	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99498989	G	G	99498989	1	3	54	0	1	0	0	0	0	0	0	0	689	928	32	4		4	ANKS1B	12	99498989	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18966	99498989	34352906	3105	59699											
ANKS1B	56899	broad.mit.edu	37	chr12	100100633	100100633	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcagcaaggaactggggtCctccattgacaaaccacaag	9	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100100633	A	A	100100633	1	1	54	0	1	0	0	0	0	0	0	0	689	870	30	3		3	ANKS1B	12	100100633	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	601644	100100633	33751262	3106	59700											
ANKS1B	56899	broad.mit.edu	37	chr12	100234295	100234295	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagttaggaaattactataGtaatgcaggaaaagatgatg	10	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100234295	A	A	100234295	1	1	54	0	1	0	0	0	0	0	0	0	689	1044	36	4		4	ANKS1B	12	100234295	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	133662	100234295	33617600	3107	59701											
NR1H4	9971	broad.mit.edu	37	chr12	100897224	100897224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattagtcctcactgcagctGtacgccgtcaggatttttca	8	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100897224	T	T	100897224	3	4	54	1	0	0	0	0	1	0	0	0	10714	1392	48	3		3	NR1H4	12	100897224	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	662929	100897224	32954671	3108	59702											
NR1H4	9971	broad.mit.edu	37	chr12	100923148	100923148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctagtctccaatacgcGttccacctttaccttgctcc	4	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100923148	T	T	100923148	1	4	54	0	1	0	0	0	0	0	0	0	10714	1160	40	3		3	NR1H4	12	100923148	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	25924	100923148	32928747	3109	59703											
GAS2L3	283431	broad.mit.edu	37	chr12	101018385	101018385	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagtgcatttcagaagacagGacccagctccttgaagtctc	9	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101018385	C	C	101018385	3	2	54	1	0	0	0	0	1	0	0	0	6310	1174	41	4	1832	4	GAS2L3	12	101018385	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	95237	101018385	32833510	3110	59704											
ANO4	121601	broad.mit.edu	37	chr12	101147640	101147640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctggttgtctattggaCgtgttcccacatgttcccac	8	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101147640	A	A	101147640	1	1	54	0	1	0	0	0	0	0	0	0	699	551	19	3		3	ANO4	12	101147640	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	129255	101147640	32704255	3111	59705											
ANO4	121601	broad.mit.edu	37	chr12	101242234	101242234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattctgggacccatgccCaaaaattcttattcaataag	6	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101242234	A	A	101242234	1	1	54	0	1	0	0	0	0	0	0	0	699	609	21	2		2	ANO4	12	101242234	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	94594	101242234	32609661	3112	59706											
ANO4	121601	broad.mit.edu	37	chr12	101277947	101277947	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatttgttaaaccaactgTctatagaggcacattatatg	6	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101277947	A	A	101277947	1	1	54	0	1	0	0	0	0	0	0	0	699	1682	58	5		5	ANO4	12	101277947	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	35713	101277947	32573948	3113	59707											
SLC5A8	160728	broad.mit.edu	37	chr12	101584172	101584172	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacataaaggagctaaacGtgacttatgaaagagtttcc	9	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101584172	A	A	101584172	1	1	54	0	1	0	0	0	0	0	0	0	14785	1160	40	4		4	SLC5A8	12	101584172	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	306225	101584172	32267723	3114	59708											
CHPT1	56994	broad.mit.edu	37	chr12	102114048	102114048	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcagtaaggcaataatttCatcattcagtgtcaatttta	6	6	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102114048	T	T	102114048	1	4	54	0	1	0	0	0	0	0	0	0	3401	841	29	4		4	CHPT1	12	102114048	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	529876	102114048	31737847	3115	59709											
IGF1	3479	broad.mit.edu	37	chr12	102813207	102813207	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagccaggagactatggggCaggatttctgcttggcccac	13	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102813207	G	G	102813207	1	3	54	0	1	0	0	0	0	0	0	0	7640	725	25	4		4	IGF1	12	102813207	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	699159	102813207	31038688	3116	59710											
PAH	5053	broad.mit.edu	37	chr12	103243771	103243771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgtccactcttctgtggGgttccccaaagtggaaatgg	11	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103243771	T	T	103243771	1	4	54	0	1	0	0	0	0	0	0	0	11488	1247	43	2		2	PAH	12	103243771	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	430564	103243771	30608124	3117	59711											
C12orf42	374470	broad.mit.edu	37	chr12	103685933	103685933	+	Intron	DEL	G	-	-													aaaagtcatgctaagtgaaaGaagccagtcacaaaagacac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103685933	-	-	103685933	6	5	54	0	1	1	0	1	0	0	0	0	1701	957	33	0		0	C12orf42	12	103685933	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	442162	103685933	30165962	3118	59712											
C12orf42	374470	broad.mit.edu	37	chr12	103759987	103759987	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaacaaaaacataaagtGaggaaaggacaccctattca	7	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103759987	A	A	103759987	1	1	54	0	1	0	0	0	0	0	0	0	1701	1305	45	4		4	C12orf42	12	103759987	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	74054	103759987	30091908	3119	59713											
STAB2	55576	broad.mit.edu	37	chr12	104071401	104071401	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgggcaggtaggttggatGtcatgagagcaaagagaaag	16	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104071401	A	A	104071401	1	1	54	0	1	0	0	0	0	0	0	0	15356	1392	48	4		4	STAB2	12	104071401	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	311414	104071401	29780494	3120	59714											
STAB2	55576	broad.mit.edu	37	chr12	104099529	104099529	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtacaataattgaatcataCtaactactgcagcaccattg	5	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104099529	G	G	104099529	1	3	54	0	1	0	0	0	0	0	0	0	15356	580	20	4		4	STAB2	12	104099529	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	28128	104099529	29752366	3121	59715											
APPL2	55198	broad.mit.edu	37	chr12	105583676	105583676	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaacacttgaactggaaatCagaatggcaacagtctttgg	9	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105583676	T	T	105583676	1	4	54	0	1	0	0	0	0	0	0	0	820	841	29	4		4	APPL2	12	105583676	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1484147	105583676	28268219	3122	59716											
RFX4	5992	broad.mit.edu	37	chr12	107002541	107002541	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgattttcttttttctttttCttttctttctttctttcttt	1	7	7	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107002541	A	A	107002541	1	1	54	0	1	0	0	0	0	0	0	0	13373	928	32	3		3	RFX4	12	107002541	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1418865	107002541	26849354	3123	59717											
RFX4	5992	broad.mit.edu	37	chr12	107071411	107071411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaggatctcttgagccCaggaattcaaggctgcagtg	14	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107071411	A	A	107071411	1	1	54	0	1	0	0	0	0	0	0	0	13373	609	21	2		2	RFX4	12	107071411	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68870	107071411	26780484	3124	59718											
RFX4	5992	broad.mit.edu	37	chr12	107075848	107075848	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagtaagcaccggacggCcattccacctgcagagcgca	10	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107075848	A	A	107075848	1	1	54	0	1	0	0	0	0	0	0	0	13373	754	26	3		3	RFX4	12	107075848	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4437	107075848	26776047	3125	59719											
CRY1	1407	broad.mit.edu	37	chr12	107415804	107415804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcaaaaaactttatttaCcaaatatgtaatattatctg	3	5	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107415804	A	A	107415804	1	1	54	0	1	0	0	0	0	0	0	0	3935	522	18	3		3	CRY1	12	107415804	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	339956	107415804	26436091	3126	59720											
BTBD11	121551	broad.mit.edu	37	chr12	107713142	107713142	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagccgggcgctggtgcGcatagccaaagaggcgcagc	18	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107713142	C	C	107713142	3	2	54	1	0	0	0	0	1	0	0	0	1548	1087	38	4	427	4	BTBD11	12	107713142	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	297338	107713142	26138753	3127	59721											
BTBD11	121551	broad.mit.edu	37	chr12	107755835	107755835	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatcttggactatcccagCctccagaactgtgaaaaaga	8	10	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107755835	T	T	107755835	1	4	54	0	1	0	0	0	0	0	0	0	1548	754	26	4		4	BTBD11	12	107755835	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42693	107755835	26096060	3128	59722											
BTBD11	121551	broad.mit.edu	37	chr12	107761877	107761877	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagataggctaagttatgcaGcggtaatagcacaaaaatct	9	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107761877	C	C	107761877	1	2	54	0	1	0	0	0	0	0	0	0	1548	986	34	4		4	BTBD11	12	107761877	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6042	107761877	26090018	3129	59723											
BTBD11	121551	broad.mit.edu	37	chr12	107782345	107782345	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcctcattcccctccTactcccaccctttcttcttc	0	21	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107782345	A	A	107782345	1	1	54	0	1	0	0	0	0	0	0	0	1548	1537	53	5		5	BTBD11	12	107782345	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	20468	107782345	26069550	3130	59724											
BTBD11	121551	broad.mit.edu	37	chr12	107790617	107790617	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttgatcttgaatttgggtCatagtcttccagtctgtctt	8	9	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107790617	T	T	107790617	1	4	54	0	1	0	0	0	0	0	0	0	1548	841	29	4		4	BTBD11	12	107790617	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8272	107790617	26061278	3131	59725											
BTBD11	121551	broad.mit.edu	37	chr12	107833346	107833346	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctctccttccccctgcCcttctcagcttccctctttt	2	22	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107833346	A	A	107833346	1	1	54	0	1	0	0	0	0	0	0	0	1548	638	22	2		2	BTBD11	12	107833346	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42729	107833346	26018549	3132	59726											
BTBD11	121551	broad.mit.edu	37	chr12	107938156	107938156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctatgtcagataagtgGgtctgcaaattccagagggt	13	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107938156	T	T	107938156	1	4	54	0	1	0	0	0	0	0	0	0	1548	1247	43	2		2	BTBD11	12	107938156	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	104810	107938156	25913739	3133	59727											
BTBD11	121551	broad.mit.edu	37	chr12	108045504	108045504	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttgcagcgacactgtgaGattatctgtgcgaaaagcat	11	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108045504	T	T	108045504	3	4	54	1	0	0	0	0	1	0	0	0	1548	933	33	3	3212	3	BTBD11	12	108045504	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	107348	108045504	25806391	3134	59728											
BTBD11	121551	broad.mit.edu	37	chr12	108051373	108051373	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaaacgaagcattcaagCagctcctgtatgacaaaaat	7	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108051373	T	T	108051373	4	4	54	1	0	0	0	0	0	1	0	0	1548	711	25	4	3364	4	BTBD11	12	108051373	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5869	108051373	25800522	3135	59729											
CMKLR1	1240	broad.mit.edu	37	chr12	108684889	108684889	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcctgcgatgttctaggGtgagctgctccatgcctgca	12	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108684889	T	T	108684889	1	4	54	0	1	0	0	0	0	0	0	0	3611	1276	44	3		3	CMKLR1	12	108684889	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	633516	108684889	25167006	3136	59730											
USP30	84749	broad.mit.edu	37	chr12	109510057	109510057	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggggtggggtgagggtggtGaaagggattatagtaaggtt	21	0	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109510057	A	A	109510057	1	1	54	0	1	0	0	0	0	0	0	0	17188	1305	45	4		4	USP30	12	109510057	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	825168	109510057	24341838	3137	59731											
ACACB	32	broad.mit.edu	37	chr12	109614121	109614121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttgggaattgtttgtgGgctgccagattatttctctt	11	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109614121	T	T	109614121	1	4	54	0	1	0	0	0	0	0	0	0	107	1247	43	2		2	ACACB	12	109614121	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	104064	109614121	24237774	3138	59732											
ACACB	32	broad.mit.edu	37	chr12	109637270	109637270	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaacgatcctacagtcctGagatccccctcggctgggaa	11	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109637270	A	A	109637270	2	1	54	1	0	0	0	0	0	0	0	1	107	1277	45	4		4	ACACB	12	109637270	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23149	109637270	24214625	3139	59733											
GIT2	9815	broad.mit.edu	37	chr12	110390545	110390545	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcctgtgtgtgcttcgtatGacacacatcactttgtgcct	9	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110390545	A	A	110390545	1	1	54	0	1	0	0	0	0	0	0	0	6461	1305	45	4		4	GIT2	12	110390545	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	753275	110390545	23461350	3140	59734											
ANKRD13A	88455	broad.mit.edu	37	chr12	110475392	110475392	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagcctctgcacaaagcaGaggctgtgggctgtcacaga	14	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110475392	A	A	110475392	1	1	54	0	1	0	0	0	0	0	0	0	641	957	33	4		4	ANKRD13A	12	110475392	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	84847	110475392	23376503	3141	59735											
HVCN1	84329	broad.mit.edu	37	chr12	111088062	111088062	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagagttgccgttctgaacGtgtcttaactgagatgataa	10	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111088062	T	T	111088062	3	4	54	1	0	0	0	0	1	0	0	0	7532	1145	40	3	162	3	HVCN1	12	111088062	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	612670	111088062	22763833	3142	59736											
CCDC63	160762	broad.mit.edu	37	chr12	111336647	111336647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcagaggtttgaaaacccGcagtttggagaccctgaccc	10	13	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111336647	A	A	111336647	1	1	54	0	1	0	0	0	0	0	0	0	2862	1102	38	4		4	CCDC63	12	111336647	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	248585	111336647	22515248	3143	59737											
MYL2	4633	broad.mit.edu	37	chr12	111353395	111353395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatttgtcttaaagaccaGttgtggcagagttgtttctt	10	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111353395	T	T	111353395	1	4	54	0	1	0	0	0	0	0	0	0	10141	1044	36	3		3	MYL2	12	111353395	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16748	111353395	22498500	3144	59738											
CUX2	23316	broad.mit.edu	37	chr12	111487329	111487329	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaatcagaggctgtacacaGagctgtggggaacaagaggg	16	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111487329	A	A	111487329	1	1	54	0	1	0	0	0	0	0	0	0	4098	957	33	4		4	CUX2	12	111487329	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	133934	111487329	22364566	3145	59739											
C12orf51	283450	broad.mit.edu	37	chr12	112641564	112641564	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtctggagagcgggttActactgtgagacctgaggag	16	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112641564	T	T	112641564	3	4	54	1	0	0	0	0	1	0	0	0	1709	391	14	5	5066	5	C12orf51	12	112641564	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1154235	112641564	21210331	3146	59740											
RPH3A	22895	broad.mit.edu	37	chr12	113285674	113285674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaacgcttcccattcaccCcagagctgctgtggcaggag	10	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113285674	A	A	113285674	1	1	54	0	1	0	0	0	0	0	0	0	13662	638	22	2		2	RPH3A	12	113285674	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	644110	113285674	20566221	3147	59741											
OAS3	4940	broad.mit.edu	37	chr12	113398978	113398978	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgcttcgcagagctgcGgaggaacttcatgaacattc	12	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113398978	A	A	113398978	3	1	54	1	0	0	0	0	1	0	0	0	10896	1116	39	4	1790	4	OAS3	12	113398978	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	113304	113398978	20452917	3148	59742											
DTX1	1840	broad.mit.edu	37	chr12	113530994	113530994	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcactcccggtgaagaacttGaatggtactgggccggtcca	13	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113530994	T	T	113530994	3	4	54	1	0	0	0	0	1	0	0	0	4833	1281	45	3	979	3	DTX1	12	113530994	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	132016	113530994	20320901	3149	59743											
DDX54	79039	broad.mit.edu	37	chr12	113599744	113599744	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagcggccgctctctgtctTaatcttcttcttgtcttcct	7	13	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113599744	A	A	113599744	4	1	54	1	0	0	0	0	0	1	0	0	4405	1763	61	5	406	5	DDX54	12	113599744	Nonsense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	68750	113599744	20252151	3150	59744											
PLBD2	196463	broad.mit.edu	37	chr12	113822707	113822707	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcgttcatcccgggtggGcccagccccgggagccgggt	17	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113822707	T	T	113822707	2	4	54	1	0	0	0	0	0	0	0	1	12121	1190	42	3		3	PLBD2	12	113822707	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	222963	113822707	20029188	3151	59745											
TBX3	6926	broad.mit.edu	37	chr12	115120798	115120798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgccggtctcggccgcccCcaccaattgatccatgatcg	10	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115120798	A	A	115120798	3	1	54	1	0	0	0	0	1	0	0	0	15781	623	22	2	2055	2	TBX3	12	115120798	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1298091	115120798	18731097	3152	59746											
NOS1	4842	broad.mit.edu	37	chr12	117705984	117705984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacacagatatacaggctgGggtatctctggatttcagat	10	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117705984	T	T	117705984	1	4	54	0	1	0	0	0	0	0	0	0	10636	1247	43	2		2	NOS1	12	117705984	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2585186	117705984	16145911	3153	59747											
NOS1	4842	broad.mit.edu	37	chr12	117749484	117749484	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagtcctgagtctgtacaGaacctcagtagctcactcac	9	12	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117749484	A	A	117749484	1	1	54	0	1	0	0	0	0	0	0	0	10636	957	33	4		4	NOS1	12	117749484	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	43500	117749484	16102411	3154	59748											
KSR2	283455	broad.mit.edu	37	chr12	118021462	118021462	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagactgagttctggttctcCcaaagaccctgtgcaccagg	10	13	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118021462	T	T	118021462	1	4	54	0	1	0	0	0	0	0	0	0	8654	638	22	4		4	KSR2	12	118021462	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	271978	118021462	15830433	3155	59749											
VSIG10	54621	broad.mit.edu	37	chr12	118504445	118504445	+	Nonstop_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatggaccatcctcttcttCagactggcctgtcttcttct	6	15	6	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118504445	A	A	118504445	4	1	54	1	0	0	0	0	0	0	0	0	17350	837	29	3	4	3	VSIG10	12	118504445	Nonstop_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	482983	118504445	15347450	3156	59750											
VSIG10	54621	broad.mit.edu	37	chr12	118504493	118504493	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcactttgctcctcactgCtgtcatctgtatggggggaa	11	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118504493	T	T	118504493	3	4	54	1	0	0	0	0	1	0	0	0	17350	797	28	4	52	4	VSIG10	12	118504493	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	48	118504493	15347402	3157	59751											
SRRM4	84530	broad.mit.edu	37	chr12	119496751	119496751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtgatcaccaccccacCcgcagcagagccagacagaa	9	16	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119496751	A	A	119496751	1	1	54	0	1	0	0	0	0	0	0	0	15289	638	22	2		2	SRRM4	12	119496751	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	992258	119496751	14355144	3158	59752											
SRRM4	84530	broad.mit.edu	37	chr12	119568489	119568489	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccatccccaggcaccgCggccggtcccctgaggaagg	12	19	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119568489	A	A	119568489	2	1	54	1	0	0	0	0	0	0	0	1	15289	755	27	3		3	SRRM4	12	119568489	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	71738	119568489	14283406	3159	59753											
GCN1L1	10985	broad.mit.edu	37	chr12	120569257	120569257	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccagagcacaaggaaaacTccaggccacattcacatgga	8	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120569257	C	C	120569257	1	2	54	0	1	0	0	0	0	0	0	0	6361	1566	54	5		5	GCN1L1	12	120569257	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1000768	120569257	13282638	3160	59754											
GCN1L1	10985	broad.mit.edu	37	chr12	120576453	120576453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattttccatctacaaagaCggcaaaagccaaactggtag	8	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120576453	A	A	120576453	1	1	54	0	1	0	0	0	0	0	0	0	6361	551	19	3		3	GCN1L1	12	120576453	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7196	120576453	13275442	3161	59755											
COQ5	84274	broad.mit.edu	37	chr12	120960072	120960072	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagcgggtgcatcttccaGagcagcaaatccttccaaac	10	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120960072	C	C	120960072	2	2	54	1	0	0	0	0	0	0	0	1	3780	929	33	4		4	COQ5	12	120960072	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	383619	120960072	12891823	3162	59756											
ACADS	35	broad.mit.edu	37	chr12	121177209	121177209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccagcgaaatccagcgGctggtgatcgccgggcatct	14	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121177209	T	T	121177209	2	4	54	1	0	0	0	0	0	0	0	1	114	1190	42	3		3	ACADS	12	121177209	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	217137	121177209	12674686	3163	59757											
P2RX7	5027	broad.mit.edu	37	chr12	121605501	121605501	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactggtgagactaattttgGtttccaaggcaacaagatga	10	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121605501	A	A	121605501	1	1	54	0	1	0	0	0	0	0	0	0	11439	1276	44	4		4	P2RX7	12	121605501	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	428292	121605501	12246394	3164	59758											
P2RX4	5025	broad.mit.edu	37	chr12	121670268	121670268	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacgagcagcgcacgctcatCaaggcctatggcatccgctt	10	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121670268	T	T	121670268	2	4	54	1	0	0	0	0	0	0	0	1	11436	816	29	4		4	P2RX4	12	121670268	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	64767	121670268	12181627	3165	59759											
WDR66	144406	broad.mit.edu	37	chr12	122396773	122396773	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcttctccgcacccagaAcaaagcctggcacagactca	7	16	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122396773	T	T	122396773	1	4	54	0	1	0	0	0	0	0	0	0	17444	58	2	5		5	WDR66	12	122396773	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	726505	122396773	11455122	3166	59760											
VPS33A	65082	broad.mit.edu	37	chr12	122747958	122747958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactatctccacctcccccCagcccccatcttctctttta	1	20	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122747958	A	A	122747958	1	1	54	0	1	0	0	0	0	0	0	0	17328	609	21	2		2	VPS33A	12	122747958	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	351185	122747958	11103937	3167	59761											
KNTC1	9735	broad.mit.edu	37	chr12	123042196	123042196	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagctcagtggataacctAtgaaaccactcaagagatgc	9	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123042196	G	G	123042196	3	3	54	1	0	0	0	0	1	0	0	0	8499	449	16	5	1514	5	KNTC1	12	123042196	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	294238	123042196	10809699	3168	59762											
KNTC1	9735	broad.mit.edu	37	chr12	123082387	123082387	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagcatggactctgcaaagCggcggcatcccaaactcctg	10	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123082387	T	T	123082387	3	4	54	1	0	0	0	0	1	0	0	0	8499	759	27	4	4635	4	KNTC1	12	123082387	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	40191	123082387	10769508	3169	59763											
ABCB9	23457	broad.mit.edu	37	chr12	123434285	123434285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgccaggcaagcccaCaggggtggggcccagccccc	14	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123434285	A	A	123434285	1	1	54	0	1	0	0	0	0	0	0	0	48	493	17	3		3	ABCB9	12	123434285	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	351898	123434285	10417610	3170	59764											
PITPNM2	57605	broad.mit.edu	37	chr12	123485673	123485673	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccacttggtgatgtcctTggggaacatttcctctgtgt	11	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123485673	A	A	123485673	4	1	54	1	0	0	0	0	0	1	0	0	12046	1821	63	5	3040	5	PITPNM2	12	123485673	Nonsense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	51388	123485673	10366222	3171	59765											
DNAH10	196385	broad.mit.edu	37	chr12	124358954	124358955	+	Intron	DNP	CC	AG	AG													ttacctacctatctgttcacCcatccaaccatccatctgtc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	124358955	AG	AG	124358954	1	1	54	0	1	0	0	0	0	0	0	0	4638	638	22	2		2	DNAH10	12	124358954	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	873281	124358954	9492941	3172	59766											
DNAH10	196385	broad.mit.edu	37	chr12	124382672	124382672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcgattctttcatgtgGgcaggaccctggcatgtcct	13	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124382672	T	T	124382672	1	4	54	0	1	0	0	0	0	0	0	0	4638	1247	43	2		2	DNAH10	12	124382672	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23718	124382672	9469223	3173	59767											
AACS	65985	broad.mit.edu	37	chr12	125561192	125561192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagacctgggatttcctccGtggaagttctagatggtgca	13	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125561192	T	T	125561192	1	4	54	0	1	0	0	0	0	0	0	0	9	1160	40	3		3	AACS	12	125561192	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1178520	125561192	8290703	3174	59768											
TMEM132B	114795	broad.mit.edu	37	chr12	125840455	125840455	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggtgattctctaataccaAgatagattctgtgcagcatt	8	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125840455	G	G	125840455	1	3	54	0	1	0	0	0	0	0	0	0	16169	87	3	5		5	TMEM132B	12	125840455	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	279263	125840455	8011440	3175	59769											
TMEM132B	114795	broad.mit.edu	37	chr12	125854414	125854414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccagcctggccaacatgGtgaaaccctgtctctactaa	8	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125854414	T	T	125854414	1	4	54	0	1	0	0	0	0	0	0	0	16169	1276	44	3		3	TMEM132B	12	125854414	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13959	125854414	7997481	3176	59770											
TMEM132B	114795	broad.mit.edu	37	chr12	126051981	126051981	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctccttcttgctctgaCccctgccccacacatctctt	3	19	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126051981	A	A	126051981	1	1	54	0	1	0	0	0	0	0	0	0	16169	522	18	3		3	TMEM132B	12	126051981	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	197567	126051981	7799914	3177	59771											
TMEM132B	114795	broad.mit.edu	37	chr12	126128558	126128558	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagttcatgaactttcactGttgttgttttttccttgtgc	8	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126128558	A	A	126128558	1	1	54	0	1	0	0	0	0	0	0	0	16169	1392	48	4		4	TMEM132B	12	126128558	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	76577	126128558	7723337	3178	59772											
TMEM132B	114795	broad.mit.edu	37	chr12	126139116	126139116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttcctacaccaccatcCtcccagaggacggcggccca	7	19	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126139116	A	A	126139116	3	1	54	1	0	0	0	0	1	0	0	0	16169	681	24	2	3131	2	TMEM132B	12	126139116	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10558	126139116	7712779	3179	59773											
TMEM132D	121256	broad.mit.edu	37	chr12	129569092	129569092	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgatctgattgagctcGgtgtcggagacctcgatctg	12	11	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129569092	T	T	129569092	2	4	54	1	0	0	0	0	0	0	0	1	16170	1103	39	1		1	TMEM132D	12	129569092	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3429976	129569092	4282803	3180	59774											
TMEM132D	121256	broad.mit.edu	37	chr12	129664640	129664640	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgtcataaatggcagaatCtggcctgctggacacctgcc	11	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129664640	G	G	129664640	1	3	54	0	1	0	0	0	0	0	0	0	16170	928	32	4		4	TMEM132D	12	129664640	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	95548	129664640	4187255	3181	59775											
TMEM132D	121256	broad.mit.edu	37	chr12	129751115	129751115	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttcctctcctttcctcttCattttctcttcttccccttt	0	18	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129751115	A	A	129751115	1	1	54	0	1	0	0	0	0	0	0	0	16170	841	29	3		3	TMEM132D	12	129751115	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	86475	129751115	4100780	3182	59776											
TMEM132D	121256	broad.mit.edu	37	chr12	129927792	129927792	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagcctgcttcctgcgcaaCtcctctgaagacaagtgtgt	10	12	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129927792	G	G	129927792	1	3	54	0	1	0	0	0	0	0	0	0	16170	580	20	4		4	TMEM132D	12	129927792	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	176677	129927792	3924103	3183	59777											
TMEM132D	121256	broad.mit.edu	37	chr12	130240747	130240747	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaggttccgggggtcttcTgctggaagacattgtgccta	14	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130240747	C	C	130240747	1	2	54	0	1	0	0	0	0	0	0	0	16170	1595	55	5		5	TMEM132D	12	130240747	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	312955	130240747	3611148	3184	59778											
RIMBP2	23504	broad.mit.edu	37	chr12	130963622	130963622	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccatgggcgtgcatccTataccctgcaccaagctggc	11	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130963622	C	C	130963622	1	2	54	0	1	0	0	0	0	0	0	0	13472	1537	53	5		5	RIMBP2	12	130963622	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	722875	130963622	2888273	3185	59779											
EP400	57634	broad.mit.edu	37	chr12	132552634	132552634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggacgtgagggggacacgGtggtgagacagctctgcctc	17	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132552634	T	T	132552634	1	4	54	0	1	0	0	0	0	0	0	0	5191	1276	44	3		3	EP400	12	132552634	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1589012	132552634	1299261	3186	59780											
POLE	5426	broad.mit.edu	37	chr12	133202289	133202289	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacttccaccagcgtcatcTcgatggcagaggagtcgtag	12	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133202289	C	C	133202289	3	2	54	1	0	0	0	0	1	0	0	0	12291	1551	54	5	273	5	POLE	12	133202289	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	649655	133202289	649606	3187	59781											
POLE	5426	broad.mit.edu	37	chr12	133241174	133241174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggaagcagccaaatgtgCgtgcaccaggacagaactaa	12	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133241174	A	A	133241174	1	1	54	0	1	0	0	0	0	0	0	0	12291	783	27	3		3	POLE	12	133241174	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	38885	133241174	610721	3188	59782											
PARP4	143	broad.mit.edu	37	chr13	25000737	25000737	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattctcttccttttacacCtaaaaggaaaaaaactccgt	3	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25000737	A	A	25000737	5	1	54	1	0	0	0	0	0	0	1	0	11557	695	24	2	336	2	PARP4	13	25000737	Splice_Site	SNP	C	TCGA-17-Z022-01A-01W-0746-08		25000737	90169141	3189	59783											
FAM123A	219287	broad.mit.edu	37	chr13	25744616	25744616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgcaataatatctccaCagcctgtaagagagtcaaag	9	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25744616	A	A	25744616	3	1	54	1	0	0	0	0	1	0	0	0	5468	478	17	3	877	3	FAM123A	13	25744616	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	743879	25744616	89425262	3190	59784											
MTMR6	9107	broad.mit.edu	37	chr13	25840041	25840041	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaattattggtttgctTgctatccggggaacataaag	9	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25840041	C	C	25840041	2	2	54	1	0	0	0	0	0	0	0	1	10041	1799	63	5		5	MTMR6	13	25840041	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	95425	25840041	89329837	3191	59785											
ATP8A2	51761	broad.mit.edu	37	chr13	26112153	26112153	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggagacattgtgaaggtcGtcaatgggcagtatcttcca	13	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26112153	C	C	26112153	3	2	54	1	0	0	0	0	1	0	0	0	1197	1145	40	4	561	4	ATP8A2	13	26112153	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	272112	26112153	89057725	3192	59786											
ATP8A2	51761	broad.mit.edu	37	chr13	26112218	26112218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttagctgtgctagtaggCaccttttttgcaataaatgt	10	6	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26112218	A	A	26112218	1	1	54	0	1	0	0	0	0	0	0	0	1197	725	25	3		3	ATP8A2	13	26112218	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	65	26112218	89057660	3193	59787											
ATP8A2	51761	broad.mit.edu	37	chr13	26153861	26153861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcttcaatttttttgggCatgctgatggaaaagggagc	12	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26153861	A	A	26153861	1	1	54	0	1	0	0	0	0	0	0	0	1197	725	25	3		3	ATP8A2	13	26153861	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	41643	26153861	89016017	3194	59788											
FLT3	2322	broad.mit.edu	37	chr13	28624273	28624273	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attccctgcccagttcatttCtggcacagcaccttatgtcc	6	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28624273	A	A	28624273	3	1	54	1	0	0	0	0	1	0	0	0	6000	913	32	3	2356	3	FLT3	13	28624273	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2470412	28624273	86545605	3195	59789											
MTUS2	23281	broad.mit.edu	37	chr13	29665971	29665971	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaagctctgtaggactcAacagtgcagcacagagcagc	11	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29665971	T	T	29665971	1	4	54	0	1	0	0	0	0	0	0	0	10060	145	5	5		5	MTUS2	13	29665971	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1041698	29665971	85503907	3196	59790											
MTUS2	23281	broad.mit.edu	37	chr13	29855846	29855846	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcctcccacaggttcaAcctttgggaatgaagaacag	10	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29855846	T	T	29855846	3	4	54	1	0	0	0	0	1	0	0	0	10060	43	2	5	2694	5	MTUS2	13	29855846	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	189875	29855846	85314032	3197	59791											
MTUS2	23281	broad.mit.edu	37	chr13	29881344	29881344	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgagaattatgacagcagcCtcaagatcatcagcaatgcc	8	10	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29881344	G	G	29881344	1	3	54	0	1	0	0	0	0	0	0	0	10060	696	24	4		4	MTUS2	13	29881344	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	25498	29881344	85288534	3198	59792											
MTUS2	23281	broad.mit.edu	37	chr13	29970104	29970104	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaaataacactgagcaAgtactcctctacagaaacaa	5	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29970104	C	C	29970104	1	2	54	0	1	0	0	0	0	0	0	0	10060	87	3	5		5	MTUS2	13	29970104	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	88760	29970104	85199774	3199	59793											
USPL1	10208	broad.mit.edu	37	chr13	31221233	31221233	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatttttagtacaaaatgAaggtggatttacatttttct	6	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31221233	T	T	31221233	1	4	54	0	1	0	0	0	0	0	0	0	17219	261	9	5		5	USPL1	13	31221233	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1251129	31221233	83948645	3200	59794											
C13orf26	122046	broad.mit.edu	37	chr13	31526832	31526832	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagattaggatatacatattCacttagtgatcctattctca	5	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31526832	A	A	31526832	4	1	54	1	0	0	0	0	0	1	0	0	1735	838	29	3	192	3	C13orf26	13	31526832	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	305599	31526832	83643046	3201	59795											
BRCA2	675	broad.mit.edu	37	chr13	32914805	32914805	+	Missense_Mutation	SNP	A	T	T													ctagacaaaatgtatcaaaaAtacttcctcgtgttgataag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32914805	T	T	32914805	3	4	54	1	0	0	0	0	1	0	0	0	1508	101	4	5	6351	5	BRCA2	13	32914805	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1387973	32914805	82255073	3202	59796	282	2									
BRCA2	675	broad.mit.edu	37	chr13	32914807	32914807	+	Silent	SNP	A	C	C													agacaaaatgtatcaaaaatActtcctcgtgttgataagag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32914807	C	C	32914807	2	2	54	1	0	0	0	0	0	0	0	1	1508	381	14	5		5	BRCA2	13	32914807	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2	32914807	82255071	3203	59797	282	2									
NBEA	26960	broad.mit.edu	37	chr13	35644083	35644083	+	Frame_Shift_Del	DEL	G	-	-													tctgagagtgatattcatttGgcagaacatcataaacaggt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35644083	-	-	35644083	7	5	54	1	0	1	0	1	0	0	0	0	10281	1339	47	0	1312	0	NBEA	13	35644083	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	2729276	35644083	79525795	3204	59798											
NBEA	26960	broad.mit.edu	37	chr13	35998929	35998929	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggtcctggacttttttttCgttggtaagctattgattat	9	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35998929	T	T	35998929	1	4	54	0	1	0	0	0	0	0	0	0	10281	899	31	4		4	NBEA	13	35998929	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	354846	35998929	79170949	3205	59799											
SOHLH2	54937	broad.mit.edu	37	chr13	36747898	36747898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccagcacgtattagtcaGgaattggagccctctctcag	9	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36747898	T	T	36747898	3	4	54	1	0	0	0	0	1	0	0	0	15038	991	35	2	358	2	SOHLH2	13	36747898	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	748969	36747898	78421980	3206	59800											
POSTN	10631	broad.mit.edu	37	chr13	38172838	38172838	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caataagcagcaatagtagaGaaaacatgggtaaaaaggga	11	4	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38172838	T	T	38172838	3	4	54	1	0	0	0	0	1	0	0	0	12354	942	33	3	2576	3	POSTN	13	38172838	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1424940	38172838	76997040	3207	59801											
STOML3	161003	broad.mit.edu	37	chr13	39541096	39541096	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcaaggtctgcaggtagcGcagctggagagctatgggag	17	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39541096	A	A	39541096	3	1	54	1	0	0	0	0	1	0	0	0	15433	1087	38	4	137	4	STOML3	13	39541096	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1368258	39541096	75628782	3208	59802											
ELF1	1997	broad.mit.edu	37	chr13	41517129	41517129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataattcatatcaggtttGtttttgtgcttcccccacaa	5	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41517129	T	T	41517129	3	4	54	1	0	0	0	0	1	0	0	0	5095	1368	48	3	1106	3	ELF1	13	41517129	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1976033	41517129	73652749	3209	59803											
EPSTI1	94240	broad.mit.edu	37	chr13	43470755	43470755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctagtgctttcactccCaccttccgtaatctagtccc	5	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43470755	A	A	43470755	1	1	54	0	1	0	0	0	0	0	0	0	5240	609	21	2		2	EPSTI1	13	43470755	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1953626	43470755	71699123	3210	59804											
ENOX1	55068	broad.mit.edu	37	chr13	43861290	43861290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggacagtcacatacccCtgagttgttgtgaggaccgc	12	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43861290	A	A	43861290	1	1	54	0	1	0	0	0	0	0	0	0	5168	696	24	2		2	ENOX1	13	43861290	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	390535	43861290	71308588	3211	59805											
ENOX1	55068	broad.mit.edu	37	chr13	43900674	43900674	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcaactttggtgaacaAggaagtcaaacaagacaagt	9	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43900674	T	T	43900674	1	4	54	0	1	0	0	0	0	0	0	0	5168	87	3	5		5	ENOX1	13	43900674	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	39384	43900674	71269204	3212	59806											
ENOX1	55068	broad.mit.edu	37	chr13	43930300	43930300	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctataacctgaaaccaatGgaaactctggtcacaccata	5	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43930300	C	C	43930300	1	2	54	0	1	0	0	0	0	0	0	0	5168	1363	47	4		4	ENOX1	13	43930300	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	29626	43930300	71239578	3213	59807											
CPB2	1361	broad.mit.edu	37	chr13	46658375	46658375	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcatggaattccgctcacaTttaaatgggctttcacattg	8	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46658375	G	G	46658375	3	3	54	1	0	0	0	0	1	0	0	0	3829	1493	52	5	1053	5	CPB2	13	46658375	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2728075	46658375	68511503	3214	59808											
LRCH1	23143	broad.mit.edu	37	chr13	47279601	47279601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaacttgtttatacgtttGcctctttagttctgcttttc	5	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47279601	T	T	47279601	1	4	54	0	1	0	0	0	0	0	0	0	9019	1334	46	3		3	LRCH1	13	47279601	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	621226	47279601	67890277	3215	59809											
RB1	5925	broad.mit.edu	37	chr13	48956147	48956147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttcatccatgtccctaCaaaggacatgaactcatcct	5	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48956147	A	A	48956147	1	1	54	0	1	0	0	0	0	0	0	0	13206	493	17	3		3	RB1	13	48956147	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1676546	48956147	66213731	3216	59810											
RNASEH2B	79621	broad.mit.edu	37	chr13	51501614	51501614	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggttaacccctgttcaGgtaagttctcttctcataac	6	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51501614	T	T	51501614	4	4	54	1	0	0	0	0	0	1	0	0	13524	1014	35	2	142	2	RNASEH2B	13	51501614	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2545467	51501614	63668264	3217	59811											
PCDH17	27253	broad.mit.edu	37	chr13	58207450	58207450	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaactgcccgagaacgctcCgctgggtacagtggtcatcg	14	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58207450	G	G	58207450	3	3	54	1	0	0	0	0	1	0	0	0	11606	652	23	4	772	4	PCDH17	13	58207450	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6705836	58207450	56962428	3218	59812											
PCDH17	27253	broad.mit.edu	37	chr13	58208528	58208528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcgccctagacagcgaCttcggcgagagcgggcgtct	16	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58208528	A	A	58208528	3	1	54	1	0	0	0	0	1	0	0	0	11606	564	20	3	1850	3	PCDH17	13	58208528	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1078	58208528	56961350	3219	59813											
DIAPH3	81624	broad.mit.edu	37	chr13	60635683	60635683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataacatttaaaaaaaaaaaAatcaagaaagaaacagctgg	5	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60635683	G	G	60635683	1	3	54	0	1	0	0	0	0	0	0	0	4560	29	1	5		5	DIAPH3	13	60635683	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2427155	60635683	54534195	3220	59814											
PCDH9	5101	broad.mit.edu	37	chr13	67591108	67591108	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtttttttttccctctgaGagcatttctagcactctcag	8	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67591108	T	T	67591108	1	4	54	0	1	0	0	0	0	0	0	0	11612	957	33	3		3	PCDH9	13	67591108	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6955425	67591108	47578770	3221	59815											
PCDH9	5101	broad.mit.edu	37	chr13	67751642	67751642	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttttgacactttgaccctCtttcctttgttgatctcttt	5	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67751642	A	A	67751642	1	1	54	0	1	0	0	0	0	0	0	0	11612	928	32	3		3	PCDH9	13	67751642	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	160534	67751642	47418236	3222	59816											
PCDH9	5101	broad.mit.edu	37	chr13	67800923	67800923	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgcttggctttggaggggAggggtcccattgtccctggc	17	11	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67800923	C	C	67800923	2	2	54	1	0	0	0	0	0	0	0	1	11612	291	11	5		5	PCDH9	13	67800923	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	49281	67800923	47368955	3223	59817											
PCDH9	5101	broad.mit.edu	37	chr13	67801777	67801777	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattacagaggtacctacggGagcattctctggaatatgca	10	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67801777	A	A	67801777	3	1	54	1	0	0	0	0	1	0	0	0	11612	1174	41	4	2933	4	PCDH9	13	67801777	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	854	67801777	47368101	3224	59818											
KLHL1	57626	broad.mit.edu	37	chr13	70456660	70456660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatcttggcataaattctGtttcacttttatttagctag	5	6	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70456660	T	T	70456660	1	4	54	0	1	0	0	0	0	0	0	0	8436	1392	48	3		3	KLHL1	13	70456660	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2654883	70456660	44713218	3225	59819											
KLF12	11278	broad.mit.edu	37	chr13	74479514	74479514	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctctgttgaaatatgatatCatcatggataatcactgcta	7	7	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74479514	T	T	74479514	1	4	54	0	1	0	0	0	0	0	0	0	8411	841	29	4		4	KLF12	13	74479514	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4022854	74479514	40690364	3226	59820											
MYCBP2	23077	broad.mit.edu	37	chr13	77755891	77755891	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaacgatgaactagtgttGagtcgttctctgtactaact	9	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77755891	A	A	77755891	3	1	54	1	0	0	0	0	1	0	0	0	10112	1294	45	4	9354	4	MYCBP2	13	77755891	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3276377	77755891	37413987	3227	59821											
POU4F1	5457	broad.mit.edu	37	chr13	79175840	79175840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggatgggcttgagcgCgatcatgttgttgtgcgaga	16	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79175840	A	A	79175840	3	1	54	1	0	0	0	0	1	0	0	0	12374	768	27	3	293	3	POU4F1	13	79175840	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1419949	79175840	35994038	3228	59822											
GPC5	2262	broad.mit.edu	37	chr13	92182498	92182498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttatgcagtcatgtttGgatatccctggagagtggtt	12	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92182498	T	T	92182498	1	4	54	0	1	0	0	0	0	0	0	0	6666	1363	47	2		2	GPC5	13	92182498	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13006658	92182498	22987380	3229	59823											
GPC5	2262	broad.mit.edu	37	chr13	93518776	93518776	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggaataagagatcctttttCaatgtaacaattatatttat	5	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93518776	A	A	93518776	1	1	54	0	1	0	0	0	0	0	0	0	6666	841	29	3		3	GPC5	13	93518776	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1336278	93518776	21651102	3230	59824											
GPC6	10082	broad.mit.edu	37	chr13	94186390	94186390	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataagtaaaagcagaagctcTaggaggctcctcaggagaat	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94186390	C	C	94186390	1	2	54	0	1	0	0	0	0	0	0	0	6667	1537	53	5		5	GPC6	13	94186390	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	667614	94186390	20983488	3231	59825											
GPC6	10082	broad.mit.edu	37	chr13	94726955	94726955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccctaatattttggaaGcaattaggtagaggtctctt	9	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94726955	T	T	94726955	1	4	54	0	1	0	0	0	0	0	0	0	6667	986	34	3		3	GPC6	13	94726955	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	540565	94726955	20442923	3232	59826											
DCT	1638	broad.mit.edu	37	chr13	95117826	95117826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctataaagtgacttctcctcCatgtctcagacatcagaaaa	5	11	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95117826	A	A	95117826	1	1	54	0	1	0	0	0	0	0	0	0	4337	609	21	2		2	DCT	13	95117826	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	390871	95117826	20052052	3233	59827											
DCT	1638	broad.mit.edu	37	chr13	95121143	95121143	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacgtagtcggggtgtactCtcttcttcgcgagatctaag	11	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95121143	G	G	95121143	3	3	54	1	0	0	0	0	1	0	0	0	4337	913	32	4	1242	4	DCT	13	95121143	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3317	95121143	20048735	3234	59828											
ABCC4	10257	broad.mit.edu	37	chr13	95723580	95723580	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaggggaagagaaggacttGagaaatgcaacaaagtaaaa	14	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95723580	C	C	95723580	1	2	54	0	1	0	0	0	0	0	0	0	55	1305	45	4		4	ABCC4	13	95723580	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	602437	95723580	19446298	3235	59829											
ABCC4	10257	broad.mit.edu	37	chr13	95724142	95724142	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatcccgaggggttaggaaTggagggtgtcatttatggat	15	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95724142	A	A	95724142	1	1	54	0	1	0	0	0	0	0	0	0	55	1479	51	5		5	ABCC4	13	95724142	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	562	95724142	19445736	3236	59830											
HS6ST3	266722	broad.mit.edu	37	chr13	96796082	96796082	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atatcagggcttagcagcatCctaatggggttggatgatag	13	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96796082	G	G	96796082	1	3	54	0	1	0	0	0	0	0	0	0	7439	870	30	4		4	HS6ST3	13	96796082	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1071940	96796082	18373796	3237	59831											
HS6ST3	266722	broad.mit.edu	37	chr13	96886935	96886935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggaaagacccaccccCatggttcaattacctcccac	7	17	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96886935	A	A	96886935	1	1	54	0	1	0	0	0	0	0	0	0	7439	609	21	2		2	HS6ST3	13	96886935	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	90853	96886935	18282943	3238	59832											
MBNL2	10150	broad.mit.edu	37	chr13	97893162	97893162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgcttctgtcctcactcGggctgtttttaggttgttca	9	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97893162	T	T	97893162	1	4	54	0	1	0	0	0	0	0	0	0	9447	1131	39	1		1	MBNL2	13	97893162	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1006227	97893162	17276716	3239	59833											
SLC15A1	6564	broad.mit.edu	37	chr13	99340886	99340886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagaataatatattctagGtcacagtacatgcacctgaa	7	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99340886	T	T	99340886	1	4	54	0	1	0	0	0	0	0	0	0	14511	1276	44	3		3	SLC15A1	13	99340886	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1447724	99340886	15828992	3240	59834											
UBAC2	337867	broad.mit.edu	37	chr13	99993551	99993551	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttacctctgccatctctctGtcttccactagcattggatg	7	13	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99993551	C	C	99993551	1	2	54	0	1	0	0	0	0	0	0	0	16961	1392	48	4		4	UBAC2	13	99993551	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	652665	99993551	15176327	3241	59835											
NALCN	259232	broad.mit.edu	37	chr13	101757000	101757000	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgaccaatcccagcaaatCactgccaaagaccaaacaaa	5	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101757000	A	A	101757000	3	1	54	1	0	0	0	0	1	0	0	0	10242	840	29	3	2662	3	NALCN	13	101757000	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1763449	101757000	13412878	3242	59836											
NALCN	259232	broad.mit.edu	37	chr13	101763498	101763498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctcttggcggatatgatGctgcacgctgaggattgacc	14	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101763498	T	T	101763498	3	4	54	1	0	0	0	0	1	0	0	0	10242	1319	46	3	3048	3	NALCN	13	101763498	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6498	101763498	13406380	3243	59837											
NALCN	259232	broad.mit.edu	37	chr13	101763591	101763591	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagctctaggaaaaaaaaAggagcccaagataaatgcat	9	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101763591	T	T	101763591	1	4	54	0	1	0	0	0	0	0	0	0	10242	87	3	5		5	NALCN	13	101763591	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	93	101763591	13406287	3244	59838											
NALCN	259232	broad.mit.edu	37	chr13	101844188	101844188	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggctcccattttgaaatTgacaataggccaaatatctg	7	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101844188	A	A	101844188	1	1	54	0	1	0	0	0	0	0	0	0	10242	1827	63	5		5	NALCN	13	101844188	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	80597	101844188	13325690	3245	59839											
NALCN	259232	broad.mit.edu	37	chr13	102011156	102011156	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaccacccaaatacccatCaaggatagactggactaaga	8	11	1	2	rs140213170	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102011156	T	T	102011156	1	4	54	0	1	0	0	0	0	0	0	0	10242	841	29	4		4	NALCN	13	102011156	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	166968	102011156	13158722	3246	59840											
FGF14	2259	broad.mit.edu	37	chr13	102521019	102521019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttttgttgttgctgcCattgttattttacatgcatt	6	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102521019	A	A	102521019	1	1	54	0	1	0	0	0	0	0	0	0	5900	609	21	2		2	FGF14	13	102521019	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	509863	102521019	12648859	3247	59841											
FGF14	2259	broad.mit.edu	37	chr13	102810570	102810570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtaaagacacatgcacaCgtatgtttattgcggcacta	9	9	0	1	rs140527622	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102810570	T	T	102810570	1	4	54	0	1	0	0	0	0	0	0	0	5900	551	19	4		4	FGF14	13	102810570	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	289551	102810570	12359308	3248	59842											
FGF14	2259	broad.mit.edu	37	chr13	102826974	102826974	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actacaaagcactgatgaaaGaaatcgtggataatggagat	10	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102826974	A	A	102826974	1	1	54	0	1	0	0	0	0	0	0	0	5900	957	33	4		4	FGF14	13	102826974	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16404	102826974	12342904	3249	59843											
FGF14	2259	broad.mit.edu	37	chr13	102853871	102853871	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gattcacaaatttaattcttCtgttgtttcactgaaaatcg	5	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102853871	A	A	102853871	1	1	54	0	1	0	0	0	0	0	0	0	5900	928	32	3		3	FGF14	13	102853871	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	26897	102853871	12316007	3250	59844											
FGF14	2259	broad.mit.edu	37	chr13	102922586	102922586	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatagtaaatgtctttcatCtctctctctctctctctgtg	4	11	7	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102922586	G	G	102922586	1	3	54	0	1	0	0	0	0	0	0	0	5900	928	32	4		4	FGF14	13	102922586	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68715	102922586	12247292	3251	59845											
KDELC1	79070	broad.mit.edu	37	chr13	103441633	103441633	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttttctccactctattctCcttcccatcccacacataaa	0	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103441633	A	A	103441633	1	1	54	0	1	0	0	0	0	0	0	0	8187	870	30	3		3	KDELC1	13	103441633	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	519047	103441633	11728245	3252	59846											
DAOA	267012	broad.mit.edu	37	chr13	106119297	106119297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagattaaaaatatgaaagtGctaaaccatacatgttatat	5	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106119297	T	T	106119297	1	4	54	0	1	0	0	0	0	0	0	0	4265	1334	46	3		3	DAOA	13	106119297	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2677664	106119297	9050581	3253	59847											
ARGLU1	55082	broad.mit.edu	37	chr13	107209470	107209470	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagctcctcacgttttgcacGttcttcctcctaaaggggag	9	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107209470	A	A	107209470	3	1	54	1	0	0	0	0	1	0	0	0	862	1145	40	4	246	4	ARGLU1	13	107209470	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1090173	107209470	7960408	3254	59848											
FAM155A	728215	broad.mit.edu	37	chr13	108105229	108105229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaatgagagacattggcCaaaacaaagaagctacaggc	9	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108105229	A	A	108105229	1	1	54	0	1	0	0	0	0	0	0	0	5511	609	21	2		2	FAM155A	13	108105229	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	895759	108105229	7064649	3255	59849											
FAM155A	728215	broad.mit.edu	37	chr13	108339628	108339628	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acataaagatggaaacaacaGacactgggcactccaagagt	9	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108339628	C	C	108339628	1	2	54	0	1	0	0	0	0	0	0	0	5511	957	33	4		4	FAM155A	13	108339628	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	234399	108339628	6830250	3256	59850											
MYO16	23026	broad.mit.edu	37	chr13	109777411	109777411	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtttgtgcatgtctgAgtttttcacttttcctccat	6	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109777411	C	C	109777411	1	2	54	0	1	0	0	0	0	0	0	0	10158	319	11	5		5	MYO16	13	109777411	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1437783	109777411	5392467	3257	59851											
MYO16	23026	broad.mit.edu	37	chr13	109825487	109825487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacccagtgaagagagagGtgcacattagtcaatcaaaa	10	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109825487	T	T	109825487	1	4	54	0	1	0	0	0	0	0	0	0	10158	1276	44	3		3	MYO16	13	109825487	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	48076	109825487	5344391	3258	59852											
COL4A1	1282	broad.mit.edu	37	chr13	110815873	110815873	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgtcaaacccaggaatacCtggaggtccaggtataccca	9	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110815873	G	G	110815873	3	3	54	1	0	0	0	0	1	0	0	0	3721	681	24	4	847	4	COL4A1	13	110815873	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	990386	110815873	4354005	3259	59853											
COL4A1	1282	broad.mit.edu	37	chr13	110865053	110865053	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccggttaatggagtcatgCcctcatttttggtgtcagaa	10	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110865053	T	T	110865053	1	4	54	0	1	0	0	0	0	0	0	0	3721	754	26	4		4	COL4A1	13	110865053	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	49180	110865053	4304825	3260	59854											
COL4A2	1284	broad.mit.edu	37	chr13	111026153	111026153	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgtggagttggctcctttCcgcctctgtgttttccttat	9	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111026153	A	A	111026153	1	1	54	0	1	0	0	0	0	0	0	0	3722	870	30	3		3	COL4A2	13	111026153	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	161100	111026153	4143725	3261	59855											
COL4A2	1284	broad.mit.edu	37	chr13	111084685	111084685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacagggaccacctggacCccctggaccaaaaggacagc	11	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111084685	A	A	111084685	3	1	54	1	0	0	0	0	1	0	0	0	3722	623	22	2	700	2	COL4A2	13	111084685	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	58532	111084685	4085193	3262	59856											
ATP4B	496	broad.mit.edu	37	chr13	114309325	114309325	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacacaattcggtggccttGagcgcgtccgtgatgtggcg	15	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114309325	C	C	114309325	1	2	54	0	1	0	0	0	0	0	0	0	1150	1305	45	4		4	ATP4B	13	114309325	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3224640	114309325	860553	3263	59857											
UPF3A	65110	broad.mit.edu	37	chr13	115048347	115048347	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactcaagagcatacattaAttttaggaatcctgatgaca	6	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115048347	G	G	115048347	3	3	54	1	0	0	0	0	1	0	0	0	17131	101	4	5	360	5	UPF3A	13	115048347	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	739022	115048347	121531	3264	59858											
OR11G2	390439	broad.mit.edu	37	chr14	20665698	20665698	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatcctcctctttgtgctCttcactgttgtttacctcct	5	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20665698	G	G	20665698	2	3	54	1	0	0	0	0	0	0	0	1	11019	900	32	4		4	OR11G2	14	20665698	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08		20665698	86683842	3265	59859											
PARP2	10038	broad.mit.edu	37	chr14	20824713	20824713	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttatggcctatctgtgcaGaacaacagagtacaataata	8	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20824713	C	C	20824713	1	2	54	0	1	0	0	0	0	0	0	0	11555	957	33	4		4	PARP2	14	20824713	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	159015	20824713	86524827	3266	59860											
TEP1	7011	broad.mit.edu	37	chr14	20873432	20873432	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaccaagtctagtatacTctttccccactcttcactga	3	14	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20873432	A	A	20873432	1	1	54	0	1	0	0	0	0	0	0	0	15881	1566	54	5		5	TEP1	14	20873432	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	48719	20873432	86476108	3267	59861											
TEP1	7011	broad.mit.edu	37	chr14	20873519	20873519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcctcccacccccaaCatgaagctagtcaccacccc	5	20	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20873519	A	A	20873519	1	1	54	0	1	0	0	0	0	0	0	0	15881	493	17	3		3	TEP1	14	20873519	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87	20873519	86476021	3268	59862											
RNASE3	6037	broad.mit.edu	37	chr14	21359610	21359610	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccacagctcagagactgGgtaagtcaacaatccccaga	10	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21359610	T	T	21359610	1	4	54	0	1	0	0	0	0	0	0	0	13516	1246	43	2		2	RNASE3	14	21359610	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	486091	21359610	85989930	3269	59863											
SLC39A2	29986	broad.mit.edu	37	chr14	21467411	21467411	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctccatgcagggggaggGctagaagctggggcaggatc	19	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21467411	T	T	21467411	1	4	54	0	1	0	0	0	0	0	0	0	14732	1218	42	3		3	SLC39A2	14	21467411	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	107801	21467411	85882129	3270	59864											
SUPT16H	11198	broad.mit.edu	37	chr14	21838358	21838358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaataaaactggcacaCtgctcagccaaaggggataa	8	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21838358	A	A	21838358	1	1	54	0	1	0	0	0	0	0	0	0	15514	580	20	3		3	SUPT16H	14	21838358	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	370947	21838358	85511182	3271	59865											
DAD1	1603	broad.mit.edu	37	chr14	23043917	23043917	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccatccaatttctcttccTaaaatcaacattataggaca	2	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23043917	C	C	23043917	1	2	54	0	1	0	0	0	0	0	0	0	4257	1537	53	5		5	DAD1	14	23043917	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1205559	23043917	84305623	3272	59866											
DAD1	1603	broad.mit.edu	37	chr14	23057909	23057909	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgagagaaaagagttgaagGggaaggtccccacgaggaga	16	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23057909	A	A	23057909	3	1	54	1	0	0	0	0	1	0	0	0	4257	1232	43	4	194	4	DAD1	14	23057909	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	13992	23057909	84291631	3273	59867											
MYH6	4624	broad.mit.edu	37	chr14	23857155	23857155	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccggggacaaggctcactCttcagccccccagccttagc	10	18	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23857155	T	T	23857155	1	4	54	0	1	0	0	0	0	0	0	0	10132	928	32	4		4	MYH6	14	23857155	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	799246	23857155	83492385	3274	59868											
MYH7	4625	broad.mit.edu	37	chr14	23885064	23885064	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggatcaggagagtgggcaTgagcagggagccagcctcgg	19	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23885064	A	A	23885064	1	1	54	0	1	0	0	0	0	0	0	0	10133	1479	51	5		5	MYH7	14	23885064	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	27909	23885064	83464476	3275	59869											
MYH7	4625	broad.mit.edu	37	chr14	23886622	23886622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctcagccctcctccccCacctccaaggaggatggctc	10	18	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23886622	A	A	23886622	1	1	54	0	1	0	0	0	0	0	0	0	10133	609	21	2		2	MYH7	14	23886622	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1558	23886622	83462918	3276	59870											
MYH7	4625	broad.mit.edu	37	chr14	23899882	23899882	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcatgtctaggggaaAaaacatggttagggtgggac	15	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23899882	G	G	23899882	1	3	54	0	1	0	0	0	0	0	0	0	10133	29	1	5		5	MYH7	14	23899882	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	13260	23899882	83449658	3277	59871											
THTPA	79178	broad.mit.edu	37	chr14	24013736	24013736	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaggtgcttgttctcccTggctggattttcccaggccc	12	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24013736	A	A	24013736	1	1	54	0	1	0	0	0	0	0	0	0	16004	1595	55	5		5	THTPA	14	24013736	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	113854	24013736	83335804	3278	59872											
THTPA	79178	broad.mit.edu	37	chr14	24015486	24015486	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggaattccaaggcctgaaCtttagctttgatgtaatcct	9	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24015486	G	G	24015486	1	3	54	0	1	0	0	0	0	0	0	0	16004	580	20	4		4	THTPA	14	24015486	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1750	24015486	83334054	3279	59873											
DHRS4	10901	broad.mit.edu	37	chr14	24429018	24429018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattacaggcatgagccacaGctccttgcccagaaggaagt	11	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24429018	T	T	24429018	1	4	54	0	1	0	0	0	0	0	0	0	4532	986	34	3		3	DHRS4	14	24429018	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	413532	24429018	82920522	3280	59874											
DHRS4	10901	broad.mit.edu	37	chr14	24464148	24464148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattacaggcatgagccacaGctccttgcccagaaggaagt	11	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24464148	T	T	24464148	1	4	54	0	1	0	0	0	0	0	0	0	4532	986	34	3		3	DHRS4	14	24464148	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	35130	24464148	82885392	3281	59875											
DCAF11	80344	broad.mit.edu	37	chr14	24587183	24587183	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaatgactgttctgatattCcagctctgttaggattctgc	9	8	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24587183	G	G	24587183	1	3	54	0	1	0	0	0	0	0	0	0	4295	870	30	4		4	DCAF11	14	24587183	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	123035	24587183	82762357	3282	59876											
DCAF11	80344	broad.mit.edu	37	chr14	24588646	24588646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactcttcccccacttcctGtataaaaagagcaaagggct	6	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24588646	T	T	24588646	1	4	54	0	1	0	0	0	0	0	0	0	4295	1392	48	3		3	DCAF11	14	24588646	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1463	24588646	82760894	3283	59877											
RNF31	55072	broad.mit.edu	37	chr14	24629542	24629542	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagctggagacggccactGagcgctacctgcacgtacgc	13	13	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24629542	A	A	24629542	3	1	54	1	0	0	0	0	1	0	0	0	13598	1291	45	4	3169	4	RNF31	14	24629542	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	40896	24629542	82719998	3284	59878											
TINF2	26277	broad.mit.edu	37	chr14	24710289	24710289	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagaagaggtgatagagaCtccaggctgcatccaactca	11	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24710289	T	T	24710289	3	4	54	1	0	0	0	0	1	0	0	0	16046	565	20	4	838	4	TINF2	14	24710289	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	80747	24710289	82639251	3285	59879											
CTSG	1511	broad.mit.edu	37	chr14	25044274	25044274	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagccccaatatgtgtcttCcatctcttcctcttgctctt	5	14	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25044274	T	T	25044274	1	4	54	0	1	0	0	0	0	0	0	0	4069	870	30	4		4	CTSG	14	25044274	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	333985	25044274	82305266	3286	59880											
STXBP6	29091	broad.mit.edu	37	chr14	25288401	25288401	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatggaggatgctgtttcCtgaaaggaggagagcaggag	17	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25288401	A	A	25288401	5	1	54	1	0	0	0	0	0	0	1	0	15476	695	24	2	189	2	STXBP6	14	25288401	Splice_Site	SNP	C	TCGA-17-Z022-01A-01W-0746-08	244127	25288401	82061139	3287	59881											
SCFD1	23256	broad.mit.edu	37	chr14	31103313	31103313	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttttcaagaaaaattcctaGatgtccagggtgaaaaatca	7	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31103313	T	T	31103313	1	4	54	0	1	0	0	0	0	0	0	0	14001	957	33	3		3	SCFD1	14	31103313	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5814912	31103313	76246227	3288	59882											
AKAP6	9472	broad.mit.edu	37	chr14	32911785	32911785	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccatgctgatcagtagtggGatcacgcctgtgaatagccc	11	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32911785	T	T	32911785	1	4	54	0	1	0	0	0	0	0	0	0	455	1189	41	3		3	AKAP6	14	32911785	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1808472	32911785	74437755	3289	59883											
NPAS3	64067	broad.mit.edu	37	chr14	34134382	34134382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatggaatactatgcagcCataaaaaggatgagttcatg	9	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34134382	A	A	34134382	1	1	54	0	1	0	0	0	0	0	0	0	10659	609	21	2		2	NPAS3	14	34134382	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1222597	34134382	73215158	3290	59884											
NPAS3	64067	broad.mit.edu	37	chr14	34134587	34134587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcaaaccaccatggcGcgtgtatacctatacaacaa	8	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34134587	T	T	34134587	1	4	54	0	1	0	0	0	0	0	0	0	10659	1102	38	3		3	NPAS3	14	34134587	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	205	34134587	73214953	3291	59885											
NPAS3	64067	broad.mit.edu	37	chr14	34243889	34243889	+	Intron	DEL	T	-	-													tggactgacaccaaacatgcTttttatttaaaatttacatt							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34243889	-	-	34243889	6	5	54	0	1	1	0	1	0	0	0	0	10659	1624	56	0		0	NPAS3	14	34243889	Intron	DEL	T	TCGA-17-Z022-01A-01W-0746-08	109302	34243889	73105651	3292	59886											
NPAS3	64067	broad.mit.edu	37	chr14	34247820	34247820	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaataaccccggctggtgtcAgcaatctctgaggcttgttt	11	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34247820	T	T	34247820	1	4	54	0	1	0	0	0	0	0	0	0	10659	203	7	5		5	NPAS3	14	34247820	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3931	34247820	73101720	3293	59887											
NPAS3	64067	broad.mit.edu	37	chr14	34268993	34268993	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaccagtccgagaacagcGaagacccggagcccgaccgg	14	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34268993	A	A	34268993	3	1	54	1	0	0	0	0	1	0	0	0	10659	1059	37	4	1581	4	NPAS3	14	34268993	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21173	34268993	73080547	3294	59888											
EGLN3	112399	broad.mit.edu	37	chr14	34400235	34400235	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactcaatataaactctcctCtaagttatctgaatcatttt	2	9	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34400235	G	G	34400235	1	3	54	0	1	0	0	0	0	0	0	0	5010	928	32	4		4	EGLN3	14	34400235	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	131242	34400235	72949305	3295	59889											
SRP54	6729	broad.mit.edu	37	chr14	35482586	35482586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtttatgtgatggatgcctCcattgggcaggcttgtgaag	14	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35482586	T	T	35482586	3	4	54	1	0	0	0	0	1	0	0	0	15273	855	30	4	701	4	SRP54	14	35482586	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1082351	35482586	71866954	3296	59890											
SLC25A21	89874	broad.mit.edu	37	chr14	37286419	37286419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagcacaagaaagaaataTgaaaaaaaaacctatataag	6	4	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37286419	C	C	37286419	1	2	54	0	1	0	0	0	0	0	0	0	14598	1479	51	5		5	SLC25A21	14	37286419	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1803833	37286419	70063121	3297	59891											
MIPOL1	145282	broad.mit.edu	37	chr14	37832876	37832876	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgctctcttcagagctatCagacagggacatttaagtct	8	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37832876	A	A	37832876	1	1	54	0	1	0	0	0	0	0	0	0	9686	841	29	3		3	MIPOL1	14	37832876	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	546457	37832876	69516664	3298	59892											
LRFN5	145581	broad.mit.edu	37	chr14	42345838	42345838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctttcacctgtaaaataTaggtttactgagcactaatc	5	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42345838	C	C	42345838	1	2	54	0	1	0	0	0	0	0	0	0	9028	1421	49	5		5	LRFN5	14	42345838	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	4512962	42345838	65003702	3299	59893											
FSCB	84075	broad.mit.edu	37	chr14	44973706	44973706	+	3'UTR	DEL	A	-	-													ctgattgctagcttaggtacAacctgactacagttcaggag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44973706	-	-	44973706	6	5	54	0	1	1	0	1	0	0	0	0	6126	145	5	0		0	FSCB	14	44973706	3'UTR	DEL	A	TCGA-17-Z022-01A-01W-0746-08	2627868	44973706	62375834	3300	59894											
FSCB	84075	broad.mit.edu	37	chr14	44974965	44974965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaggctctactttagctGgggcctcttcaagggcgccc	14	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44974965	T	T	44974965	3	4	54	1	0	0	0	0	1	0	0	0	6126	1348	47	2	1255	2	FSCB	14	44974965	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1259	44974965	62374575	3301	59895											
FAM179B	23116	broad.mit.edu	37	chr14	45473285	45473285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgctagcctcaattttgGcagtaagacacagcaaacat	8	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45473285	T	T	45473285	3	4	54	1	0	0	0	0	1	0	0	0	5551	1203	42	3	2374	3	FAM179B	14	45473285	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	498320	45473285	61876255	3302	59896											
MDGA2	161357	broad.mit.edu	37	chr14	47426612	47426612	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatctcccagctccagctTcatttatgatgctacagtta	6	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47426612	C	C	47426612	3	2	54	1	0	0	0	0	1	0	0	0	9500	1783	62	5	1059	5	MDGA2	14	47426612	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1953327	47426612	59922928	3303	59897											
MDGA2	161357	broad.mit.edu	37	chr14	47572432	47572432	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaaactgtgcttacagattCaaggaatagaaaaatatttc	6	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47572432	A	A	47572432	1	1	54	0	1	0	0	0	0	0	0	0	9500	841	29	3		3	MDGA2	14	47572432	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	145820	47572432	59777108	3304	59898											
MDGA2	161357	broad.mit.edu	37	chr14	47627911	47627911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgatcagcgtgcctcgGcctcccaaagtgctgggatt	13	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47627911	T	T	47627911	1	4	54	0	1	0	0	0	0	0	0	0	9500	1218	42	3		3	MDGA2	14	47627911	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	55479	47627911	59721629	3305	59899											
MDGA2	161357	broad.mit.edu	37	chr14	47693720	47693720	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggttgccccatttaattaaTgtctagtgaatgaggatttg	10	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47693720	A	A	47693720	1	1	54	0	1	0	0	0	0	0	0	0	9500	1479	51	5		5	MDGA2	14	47693720	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	65809	47693720	59655820	3306	59900											
MDGA2	161357	broad.mit.edu	37	chr14	47994458	47994458	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggtttaacgttcccacatCtctcacttttttatggtttt	5	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47994458	G	G	47994458	1	3	54	0	1	0	0	0	0	0	0	0	9500	928	32	4		4	MDGA2	14	47994458	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	300738	47994458	59355082	3307	59901											
MDGA2	161357	broad.mit.edu	37	chr14	48000815	48000815	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attaaatgaatttatctctaGgagcatagcatgttcactgt	7	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48000815	C	C	48000815	1	2	54	0	1	0	0	0	0	0	0	0	9500	1015	35	4		4	MDGA2	14	48000815	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6357	48000815	59348725	3308	59902											
MDGA2	161357	broad.mit.edu	37	chr14	48035913	48035913	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagtcactgggggccaGgaactagtcctagtatgtgg	15	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48035913	A	A	48035913	1	1	54	0	1	0	0	0	0	0	0	0	9500	1015	35	4		4	MDGA2	14	48035913	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	35098	48035913	59313627	3309	59903											
MDGA2	161357	broad.mit.edu	37	chr14	48063288	48063288	+	Intron	DEL	C	-	-													ttttttcaaaataaatcaatCagcgcacttttctccctcag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48063288	-	-	48063288	6	5	54	0	1	1	0	1	0	0	0	0	9500	841	29	0		0	MDGA2	14	48063288	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	27375	48063288	59286252	3310	59904											
MDGA2	161357	broad.mit.edu	37	chr14	48079330	48079330	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaatccagcaccctttatGattaaaactctcagcaaaat	3	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48079330	T	T	48079330	1	4	54	0	1	0	0	0	0	0	0	0	9500	1305	45	3		3	MDGA2	14	48079330	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16042	48079330	59270210	3311	59905											
CDKL1	8814	broad.mit.edu	37	chr14	50883005	50883005	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgttatgccattcatcCagtggtcatttttttttgcc	6	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50883005	A	A	50883005	1	1	54	0	1	0	0	0	0	0	0	0	3183	609	21	2		2	CDKL1	14	50883005	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2803675	50883005	56466535	3312	59906											
CDKL1	8814	broad.mit.edu	37	chr14	50883052	50883052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttcctggagttaactgcCagttttttgtttggcttggt	11	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50883052	T	T	50883052	1	4	54	0	1	0	0	0	0	0	0	0	3183	609	21	4		4	CDKL1	14	50883052	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	47	50883052	56466488	3313	59907											
NIN	51199	broad.mit.edu	37	chr14	51224111	51224111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcagaagctcgatcacagtCcgcacataacatcattagct	6	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51224111	A	A	51224111	3	1	54	1	0	0	0	0	1	0	0	0	10512	855	30	3	2968	3	NIN	14	51224111	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	341059	51224111	56125429	3314	59908											
PYGL	5836	broad.mit.edu	37	chr14	51376465	51376465	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgtggccaggaggctctcCtgcctcatcgtgggagatgt	14	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51376465	G	G	51376465	1	3	54	0	1	0	0	0	0	0	0	0	12969	696	24	4		4	PYGL	14	51376465	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	152354	51376465	55973075	3315	59909											
FRMD6	122786	broad.mit.edu	37	chr14	52174735	52174735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcatcattttgggggtGggggtagaacttacatctct	11	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52174735	T	T	52174735	1	4	54	0	1	0	0	0	0	0	0	0	6114	1363	47	2		2	FRMD6	14	52174735	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	798270	52174735	55174805	3316	59910											
GNG2	54331	broad.mit.edu	37	chr14	52433536	52433536	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattctggaaactctaggctAtgcatgtttaaagatctggt	9	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52433536	G	G	52433536	1	3	54	0	1	0	0	0	0	0	0	0	6591	464	16	5		5	GNG2	14	52433536	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	258801	52433536	54916004	3317	59911											
NID2	22795	broad.mit.edu	37	chr14	52527137	52527137	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcctgtaaaaaacaaatAaaagaagaaagaaacagaat	5	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52527137	G	G	52527137	1	3	54	0	1	0	0	0	0	0	0	0	10510	377	13	5		5	NID2	14	52527137	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	93601	52527137	54822403	3318	59912											
CGRRF1	10668	broad.mit.edu	37	chr14	54976777	54976777	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccaccggcctggtattgGgatggtaagtgtcccagggg	16	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54976777	T	T	54976777	4	4	54	1	0	0	0	0	0	1	0	0	3336	1233	43	2	102	2	CGRRF1	14	54976777	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2449640	54976777	52372763	3319	59913											
SAMD4A	23034	broad.mit.edu	37	chr14	55104701	55104701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatatcaggaaggtctccaGcatcaaagtgagtcagttat	10	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55104701	T	T	55104701	1	4	54	0	1	0	0	0	0	0	0	0	13932	986	34	3		3	SAMD4A	14	55104701	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	127924	55104701	52244839	3320	59914											
KTN1	3895	broad.mit.edu	37	chr14	56118535	56118535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatttgaagtgtacacattAtaaagacttataaagcttaa	5	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56118535	T	T	56118535	1	4	54	0	1	0	0	0	0	0	0	0	8657	464	16	5		5	KTN1	14	56118535	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1013834	56118535	51231005	3321	59915											
KTN1	3895	broad.mit.edu	37	chr14	56134081	56134081	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattatttttttaacatgatGacattattcaagaaaggtgt	6	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56134081	C	C	56134081	1	2	54	0	1	0	0	0	0	0	0	0	8657	1305	45	4		4	KTN1	14	56134081	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15546	56134081	51215459	3322	59916											
KTN1	3895	broad.mit.edu	37	chr14	56138199	56138199	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaaaccatttatcataAtacagtattaagtactaaaa	3	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56138199	G	G	56138199	1	3	54	0	1	0	0	0	0	0	0	0	8657	116	4	5		5	KTN1	14	56138199	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4118	56138199	51211341	3323	59917											
C14orf101	54916	broad.mit.edu	37	chr14	57075667	57075667	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctagtaatccgtagtaatCagaaggtttaacatagtatt	7	5	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57075667	T	T	57075667	1	4	54	0	1	0	0	0	0	0	0	0	1747	841	29	4		4	C14orf101	14	57075667	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	937468	57075667	50273873	3324	59918											
KIAA0586	9786	broad.mit.edu	37	chr14	58956902	58956902	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagaagatataggactgTacctgacaaaccttaatgat	7	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58956902	C	C	58956902	3	2	54	1	0	0	0	0	1	0	0	0	8256	1638	57	5	3668	5	KIAA0586	14	58956902	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1881235	58956902	48392638	3325	59919											
DAAM1	23002	broad.mit.edu	37	chr14	59748548	59748548	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcctgcttgattcagcCatattatgaaatcaaaatga	6	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59748548	T	T	59748548	1	4	54	0	1	0	0	0	0	0	0	0	4248	609	21	4		4	DAAM1	14	59748548	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	791646	59748548	47600992	3326	59920											
GPR135	64582	broad.mit.edu	37	chr14	59897830	59897830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctaatccagtaaaaagCacttacttgagttaatatca	4	9	2	1	rs139478085	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59897830	A	A	59897830	1	1	54	0	1	0	0	0	0	0	0	0	6709	725	25	3		3	GPR135	14	59897830	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	149282	59897830	47451710	3327	59921											
RTN1	6252	broad.mit.edu	37	chr14	60298192	60298192	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctcaagctggccaaccttCagactggaactacatcatca	8	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60298192	A	A	60298192	1	1	54	0	1	0	0	0	0	0	0	0	13836	841	29	3		3	RTN1	14	60298192	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	400362	60298192	47051348	3328	59922											
SLC38A6	145389	broad.mit.edu	37	chr14	61449210	61449210	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacatttaacactactaaAtttgtgtgcttacaggaact	5	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61449210	G	G	61449210	1	3	54	0	1	0	0	0	0	0	0	0	14722	116	4	5		5	SLC38A6	14	61449210	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1151018	61449210	45900330	3329	59923											
SLC38A6	145389	broad.mit.edu	37	chr14	61464328	61464328	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgttaacagtgcttgagtaGattagcagtcaggccgggct	14	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61464328	T	T	61464328	1	4	54	0	1	0	0	0	0	0	0	0	14722	957	33	3		3	SLC38A6	14	61464328	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15118	61464328	45885212	3330	59924											
HIF1A	3091	broad.mit.edu	37	chr14	62188849	62188849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcgctcttttgcccatGctggagtgcagtggcacaat	12	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62188849	T	T	62188849	1	4	54	0	1	0	0	0	0	0	0	0	7170	1334	46	3		3	HIF1A	14	62188849	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	724521	62188849	45160691	3331	59925											
SYT16	83851	broad.mit.edu	37	chr14	62482702	62482702	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgagtccttcccccaggaTagtcctgggagctctggttg	12	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62482702	C	C	62482702	1	2	54	0	1	0	0	0	0	0	0	0	15591	1421	49	5		5	SYT16	14	62482702	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	293853	62482702	44866838	3332	59926											
KCNH5	27133	broad.mit.edu	37	chr14	63226118	63226118	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatcctgtggcatcaattaTgaatttatttctggggcatg	9	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63226118	A	A	63226118	1	1	54	0	1	0	0	0	0	0	0	0	8105	1479	51	5		5	KCNH5	14	63226118	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	743416	63226118	44123422	3333	59927											
KCNH5	27133	broad.mit.edu	37	chr14	63229080	63229080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcacagccttgaatgcCcagatgggccatttcccagc	10	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63229080	A	A	63229080	1	1	54	0	1	0	0	0	0	0	0	0	8105	638	22	2		2	KCNH5	14	63229080	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2962	63229080	44120460	3334	59928											
RHOJ	57381	broad.mit.edu	37	chr14	63712785	63712785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgattcccctcctccacccCagctgtctcctggcaacaac	5	20	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63712785	A	A	63712785	1	1	54	0	1	0	0	0	0	0	0	0	13450	609	21	2		2	RHOJ	14	63712785	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	483705	63712785	43636755	3335	59929											
RHOJ	57381	broad.mit.edu	37	chr14	63724400	63724400	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccaccccatccttctcCcctgcaaatatgactttttt	2	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63724400	A	A	63724400	1	1	54	0	1	0	0	0	0	0	0	0	13450	638	22	2		2	RHOJ	14	63724400	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11615	63724400	43625140	3336	59930											
GPHB5	122876	broad.mit.edu	37	chr14	63779701	63779701	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgcagtcacagcggatggCcacgggataggtgtagaagg	16	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63779701	A	A	63779701	1	1	54	0	1	0	0	0	0	0	0	0	6674	754	26	3		3	GPHB5	14	63779701	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	55301	63779701	43569839	3337	59931											
GPHB5	122876	broad.mit.edu	37	chr14	63784348	63784348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacactgtcatctgcacaaCttagcaactcacctcccagg	6	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63784348	A	A	63784348	1	1	54	0	1	0	0	0	0	0	0	0	6674	580	20	3		3	GPHB5	14	63784348	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4647	63784348	43565192	3338	59932											
SYNE2	23224	broad.mit.edu	37	chr14	64428341	64428341	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgggactggagaggaggctCaggtatgttttcatatgcat	14	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64428341	T	T	64428341	4	4	54	1	0	0	0	0	0	1	0	0	15565	827	29	4	916	4	SYNE2	14	64428341	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	643993	64428341	42921199	3339	59933											
SYNE2	23224	broad.mit.edu	37	chr14	64669777	64669777	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctatgtgttttcacgtgctCacattccataacattggttt	6	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64669777	G	G	64669777	1	3	54	0	1	0	0	0	0	0	0	0	15565	841	29	4		4	SYNE2	14	64669777	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	241436	64669777	42679763	3340	59934											
SYNE2	23224	broad.mit.edu	37	chr14	64670557	64670557	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacaggtgcttggagaccgGattgggggtgaacctttttc	14	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64670557	A	A	64670557	1	1	54	0	1	0	0	0	0	0	0	0	15565	1189	41	4		4	SYNE2	14	64670557	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	780	64670557	42678983	3341	59935											
SYNE2	23224	broad.mit.edu	37	chr14	64691777	64691777	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcaggtaacggggctttAccgtgacagcagtgcgttcc	14	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64691777	T	T	64691777	1	4	54	0	1	0	0	0	0	0	0	0	15565	406	14	5		5	SYNE2	14	64691777	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	21220	64691777	42657763	3342	59936											
SPTB	6710	broad.mit.edu	37	chr14	65252707	65252707	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagacaaggcatgaagacacAcggaggaggtgatgagcaca	14	8	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65252707	T	T	65252707	1	4	54	0	1	0	0	0	0	0	0	0	15236	174	6	5		5	SPTB	14	65252707	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	560930	65252707	42096833	3343	59937											
SPTB	6710	broad.mit.edu	37	chr14	65262078	65262078	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatctcatccatccagtcgaTgctgtgcagcatgtcctgga	10	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65262078	C	C	65262078	3	2	54	1	0	0	0	0	1	0	0	0	15236	1464	51	5	5534	5	SPTB	14	65262078	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	9371	65262078	42087462	3344	59938											
SPTB	6710	broad.mit.edu	37	chr14	65314564	65314564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcaatgctccatgtgcCccccaccgcaaaccccatcc	4	21	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65314564	A	A	65314564	1	1	54	0	1	0	0	0	0	0	0	0	15236	638	22	2		2	SPTB	14	65314564	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	52486	65314564	42034976	3345	59939											
GPHN	10243	broad.mit.edu	37	chr14	67510285	67510285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaccagccttgcatccaGgtatgaagccgacttgatca	9	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67510285	T	T	67510285	1	4	54	0	1	0	0	0	0	0	0	0	6675	1015	35	2		2	GPHN	14	67510285	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2195721	67510285	39839255	3346	59940											
RAD51L1	5890	broad.mit.edu	37	chr14	68739955	68739955	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actaaggttagggcagctccTgagcaggaggaggctgctat	15	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68739955	G	G	68739955	1	3	54	0	1	0	0	0	0	0	0	0	13097	1595	55	5		5	RAD51L1	14	68739955	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1229670	68739955	38609585	3347	59941											
RAD51L1	5890	broad.mit.edu	37	chr14	68837898	68837898	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaatctagaatgttgaaGagaacagattggggtgggag	14	2	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68837898	A	A	68837898	1	1	54	0	1	0	0	0	0	0	0	0	13097	957	33	4		4	RAD51L1	14	68837898	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	97943	68837898	38511642	3348	59942											
RAD51L1	5890	broad.mit.edu	37	chr14	68841569	68841569	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctcagttttacctgcgctGagggatcactaaattcctat	8	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68841569	T	T	68841569	1	4	54	0	1	0	0	0	0	0	0	0	13097	1305	45	3		3	RAD51L1	14	68841569	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3671	68841569	38507971	3349	59943											
RAD51L1	5890	broad.mit.edu	37	chr14	68841906	68841906	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacttcaggagccagggtgtGaggatgtcctttaatctctt	11	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68841906	A	A	68841906	1	1	54	0	1	0	0	0	0	0	0	0	13097	1305	45	4		4	RAD51L1	14	68841906	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	337	68841906	38507634	3350	59944											
ACTN1	87	broad.mit.edu	37	chr14	69429759	69429759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcctcactcacctcctgCccctccctccccagaacttt	2	23	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69429759	A	A	69429759	1	1	54	0	1	0	0	0	0	0	0	0	204	754	26	3		3	ACTN1	14	69429759	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	587853	69429759	37919781	3351	59945											
SMOC1	64093	broad.mit.edu	37	chr14	70460992	70460992	+	Intron	DEL	G	-	-													gaactgggaggagtggatgtGggagagagctgaagcctcaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70460992	-	-	70460992	6	5	54	0	1	1	0	1	0	0	0	0	14915	1363	47	0		0	SMOC1	14	70460992	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	1031233	70460992	36888548	3352	59946											
SIPA1L1	26037	broad.mit.edu	37	chr14	72055073	72055073	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgaagcctaccccagcTcccccagaaaagctcttcgc	7	18	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72055073	G	G	72055073	3	3	54	1	0	0	0	0	1	0	0	0	14442	1551	54	5	486	5	SIPA1L1	14	72055073	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1594081	72055073	35294467	3353	59947											
RGS6	9628	broad.mit.edu	37	chr14	72541357	72541357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttgtaccagtgtagagCctgtttttccgagcatctac	11	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72541357	A	A	72541357	1	1	54	0	1	0	0	0	0	0	0	0	13418	754	26	3		3	RGS6	14	72541357	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	486284	72541357	34808183	3354	59948											
DPF3	8110	broad.mit.edu	37	chr14	73137930	73137930	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggctcttccaaatcgtcctCatcaaagccgtggaaagttg	9	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73137930	G	G	73137930	1	3	54	0	1	0	0	0	0	0	0	0	4758	835	29	4		4	DPF3	14	73137930	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	596573	73137930	34211610	3355	59949											
PAPLN	89932	broad.mit.edu	37	chr14	73725692	73725692	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggctccctgcagaggtcCccagcatgcaggatgtgcac	12	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73725692	T	T	73725692	3	4	54	1	0	0	0	0	1	0	0	0	11522	623	22	4	1602	4	PAPLN	14	73725692	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	587762	73725692	33623848	3356	59950											
PAPLN	89932	broad.mit.edu	37	chr14	73733364	73733364	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagtcctgagtggcctttGaggtcaggtggcatgggtag	18	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73733364	C	C	73733364	1	2	54	0	1	0	0	0	0	0	0	0	11522	1305	45	4		4	PAPLN	14	73733364	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7672	73733364	33616176	3357	59951											
HEATR4	399671	broad.mit.edu	37	chr14	73965078	73965078	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagagggcagcatgtcactGaagactgagcttactatatt	10	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73965078	A	A	73965078	1	1	54	0	1	0	0	0	0	0	0	0	7097	1305	45	4		4	HEATR4	14	73965078	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	231714	73965078	33384462	3358	59952											
PROX2	283571	broad.mit.edu	37	chr14	75333133	75333133	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccaaggtccaagtcctgGgacacagggacatgaagagg	16	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75333133	T	T	75333133	1	4	54	0	1	0	0	0	0	0	0	0	12667	1247	43	2		2	PROX2	14	75333133	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1368055	75333133	32016407	3359	59953											
TTLL5	23093	broad.mit.edu	37	chr14	76195106	76195106	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctagaattgagaaggaaggaGacctgagagtgtcaccctga	13	7	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76195106	T	T	76195106	1	4	54	0	1	0	0	0	0	0	0	0	16856	957	33	3		3	TTLL5	14	76195106	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	861973	76195106	31154434	3360	59954											
C14orf179	112752	broad.mit.edu	37	chr14	76525232	76525232	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcccatgtcctatctcccActgtgtggttttagaattat	7	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76525232	G	G	76525232	1	3	54	0	1	0	0	0	0	0	0	0	1775	174	6	5		5	C14orf179	14	76525232	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	330126	76525232	30824308	3361	59955											
ESRRB	2103	broad.mit.edu	37	chr14	76905730	76905731	+	Missense_Mutation	DNP	TG	CT	CT													acaggcacctgggctccagcTgcggctccttcatcaagact							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	76905731	CT	CT	76905730	3	2	54	1	0	0	0	0	1	0	0	0	5303	1580	55	5	36	5	ESRRB	14	76905730	Missense_Mutation	DNP	TG	TCGA-17-Z022-01A-01W-0746-08	380498	76905730	30443810	3362	59956											
ANGEL1	23357	broad.mit.edu	37	chr14	77270454	77270454	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actttttcactggcaacactGaaatgtccatgaaacaggag	8	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77270454	A	A	77270454	1	1	54	0	1	0	0	0	0	0	0	0	608	1305	45	4		4	ANGEL1	14	77270454	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	364724	77270454	30079086	3363	59957											
VIPAR	63894	broad.mit.edu	37	chr14	77908845	77908845	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctattcctttgtatccctCagagtgctttgaaacaagta	6	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77908845	T	T	77908845	1	4	54	0	1	0	0	0	0	0	0	0	17295	841	29	4		4	VIPAR	14	77908845	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	638391	77908845	29440695	3364	59958											
ADCK1	57143	broad.mit.edu	37	chr14	78392145	78392145	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcctgaattactgccacctCtggcagtctctgatctggac	9	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78392145	T	T	78392145	2	4	54	1	0	0	0	0	0	0	0	1	288	900	32	4		4	ADCK1	14	78392145	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	483300	78392145	28957395	3365	59959											
NRXN3	9369	broad.mit.edu	37	chr14	78641072	78641072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaagcagggatggtcagTggggaagagtcctcaaggta	16	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78641072	A	A	78641072	1	1	54	0	1	0	0	0	0	0	0	0	10762	1711	59	5		5	NRXN3	14	78641072	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	248927	78641072	28708468	3366	59960											
NRXN3	9369	broad.mit.edu	37	chr14	78701557	78701557	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatataggctgtagttttagCctatcatgatctcttggagt	10	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78701557	G	G	78701557	1	3	54	0	1	0	0	0	0	0	0	0	10762	754	26	4		4	NRXN3	14	78701557	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	60485	78701557	28647983	3367	59961											
NRXN3	9369	broad.mit.edu	37	chr14	78844497	78844497	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagacactatacaagagaCttctaaataacccataagtt	4	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78844497	T	T	78844497	1	4	54	0	1	0	0	0	0	0	0	0	10762	580	20	4		4	NRXN3	14	78844497	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	142940	78844497	28505043	3368	59962											
NRXN3	9369	broad.mit.edu	37	chr14	78945894	78945894	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttcgtaaggtttgtcccCagaacatacttattaaaatg	6	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78945894	A	A	78945894	1	1	54	0	1	0	0	0	0	0	0	0	10762	609	21	2		2	NRXN3	14	78945894	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	101397	78945894	28403646	3369	59963											
NRXN3	9369	broad.mit.edu	37	chr14	79013591	79013591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggagtctctctctgtcgcCcagcctggatgcagtggcga	13	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79013591	A	A	79013591	1	1	54	0	1	0	0	0	0	0	0	0	10762	638	22	2		2	NRXN3	14	79013591	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	67697	79013591	28335949	3370	59964											
NRXN3	9369	broad.mit.edu	37	chr14	79065036	79065036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggctttttaacatttggCtttgaagacagggttatatg	11	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79065036	A	A	79065036	1	1	54	0	1	0	0	0	0	0	0	0	10762	812	28	3		3	NRXN3	14	79065036	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	51445	79065036	28284504	3371	59965											
NRXN3	9369	broad.mit.edu	37	chr14	79110864	79110864	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcaaattaattctcttccCctctccttacctgctgtatc	2	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79110864	T	T	79110864	1	4	54	0	1	0	0	0	0	0	0	0	10762	638	22	4		4	NRXN3	14	79110864	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45828	79110864	28238676	3372	59966											
NRXN3	9369	broad.mit.edu	37	chr14	79158099	79158099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattttcttcaaggcagccCatgattaggccagaggagga	12	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79158099	A	A	79158099	1	1	54	0	1	0	0	0	0	0	0	0	10762	609	21	2		2	NRXN3	14	79158099	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	47235	79158099	28191441	3373	59967											
NRXN3	9369	broad.mit.edu	37	chr14	79175701	79175701	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatcaactttgagaccccaGaggcttacatcagcttgccc	7	15	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79175701	T	T	79175701	4	4	54	1	0	0	0	0	0	1	0	0	10762	943	33	3	250	3	NRXN3	14	79175701	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	17602	79175701	28173839	3374	59968											
NRXN3	9369	broad.mit.edu	37	chr14	79189823	79189823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagccatcttgaatcagtGggagattcttaggaggagtg	14	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79189823	T	T	79189823	1	4	54	0	1	0	0	0	0	0	0	0	10762	1363	47	2		2	NRXN3	14	79189823	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14122	79189823	28159717	3375	59969											
NRXN3	9369	broad.mit.edu	37	chr14	79274893	79274893	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacctcttcctccctcccTgccctccctccttccagtcc	2	24	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79274893	G	G	79274893	1	3	54	0	1	0	0	0	0	0	0	0	10762	1595	55	5		5	NRXN3	14	79274893	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	85070	79274893	28074647	3376	59970											
NRXN3	9369	broad.mit.edu	37	chr14	79276709	79276709	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagttttccctcaagtttcAttttgttctttaaaaaaaaa	3	6	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79276709	C	C	79276709	1	2	54	0	1	0	0	0	0	0	0	0	10762	232	8	5		5	NRXN3	14	79276709	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1816	79276709	28072831	3377	59971											
NRXN3	9369	broad.mit.edu	37	chr14	79359246	79359246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaaatgttgctgcttGctagtgcattctttgttatg	9	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79359246	T	T	79359246	1	4	54	0	1	0	0	0	0	0	0	0	10762	1334	46	3		3	NRXN3	14	79359246	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	82537	79359246	27990294	3378	59972											
NRXN3	9369	broad.mit.edu	37	chr14	80316083	80316083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatataacccagcaatGccttttctgagtatataccc	5	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80316083	T	T	80316083	1	4	54	0	1	0	0	0	0	0	0	0	10762	1334	46	3		3	NRXN3	14	80316083	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	956837	80316083	27033457	3379	59973											
NRXN3	9369	broad.mit.edu	37	chr14	80318074	80318074	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgaatataactcttgtgAtctcttccagtggaggctga	9	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80318074	T	T	80318074	1	4	54	0	1	0	0	0	0	0	0	0	10762	348	12	5		5	NRXN3	14	80318074	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1991	80318074	27031466	3380	59974											
C14orf145	145508	broad.mit.edu	37	chr14	80981524	80981524	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taggactctattgggtccatGatgactaatgcctggctgct	11	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80981524	A	A	80981524	1	1	54	0	1	0	0	0	0	0	0	0	1762	1305	45	4		4	C14orf145	14	80981524	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	663450	80981524	26368016	3381	59975											
TSHR	7253	broad.mit.edu	37	chr14	81422175	81422175	+	Frame_Shift_Del	DEL	C	-	-													ttcaacgcatccccagcttaCcgcccagtacgcagactctg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81422175	-	-	81422175	7	5	54	1	0	1	0	1	0	0	0	0	16747	507	18	0	153	0	TSHR	14	81422175	Frame_Shift_Del	DEL	C	TCGA-17-Z022-01A-01W-0746-08	440651	81422175	25927365	3382	59976											
TSHR	7253	broad.mit.edu	37	chr14	81449404	81449404	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgttcacccatttgcccaagAgtttattaatgaaatggtat	7	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81449404	T	T	81449404	1	4	54	0	1	0	0	0	0	0	0	0	16747	319	11	5		5	TSHR	14	81449404	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	27229	81449404	25900136	3383	59977											
TSHR	7253	broad.mit.edu	37	chr14	81514492	81514492	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatccctttttcagttgaggTtaagaaagccctgactccca	7	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81514492	G	G	81514492	1	3	54	0	1	0	0	0	0	0	0	0	16747	1740	60	5		5	TSHR	14	81514492	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	65088	81514492	25835048	3384	59978											
TSHR	7253	broad.mit.edu	37	chr14	81558822	81558822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcgcagcaagacccctgCtgcagaaggaaagcattttt	10	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81558822	A	A	81558822	1	1	54	0	1	0	0	0	0	0	0	0	16747	812	28	3		3	TSHR	14	81558822	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	44330	81558822	25790718	3385	59979											
TSHR	7253	broad.mit.edu	37	chr14	81609869	81609869	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccatgccatcgactggcaGacaggccctgggtgcaacac	11	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81609869	A	A	81609869	2	1	54	1	0	0	0	0	0	0	0	1	16747	933	33	4		4	TSHR	14	81609869	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	51047	81609869	25739671	3386	59980											
STON2	85439	broad.mit.edu	37	chr14	81888423	81888423	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatcttagaactcagcagaaGatcaggtgctatgatttgga	10	6	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81888423	T	T	81888423	1	4	54	0	1	0	0	0	0	0	0	0	15436	957	33	3		3	STON2	14	81888423	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	278554	81888423	25461117	3387	59981											
GALC	2581	broad.mit.edu	37	chr14	88361205	88361205	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcgtttgtctatttttgTtgttgttggaaacagaaagc	10	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88361205	G	G	88361205	1	3	54	0	1	0	0	0	0	0	0	0	6263	1740	60	5		5	GALC	14	88361205	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	6472782	88361205	18988335	3388	59982											
GALC	2581	broad.mit.edu	37	chr14	88421295	88421295	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccgtgtagactcaaagctGatagagaagattcttctcaa	8	8	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88421295	A	A	88421295	1	1	54	0	1	0	0	0	0	0	0	0	6263	1305	45	4		4	GALC	14	88421295	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	60090	88421295	18928245	3389	59983											
GALC	2581	broad.mit.edu	37	chr14	88431914	88431914	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgggccgtcatcaacCcgcatctcccataaggcaac	8	17	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88431914	G	G	88431914	3	3	54	1	0	0	0	0	1	0	0	0	6263	623	22	4	1188	4	GALC	14	88431914	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10619	88431914	18917626	3390	59984											
TTC7B	145567	broad.mit.edu	37	chr14	91196635	91196635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactgctcgacctaaaaaaCcaacttcctcaggcaaatat	5	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91196635	A	A	91196635	1	1	54	0	1	0	0	0	0	0	0	0	16839	522	18	3		3	TTC7B	14	91196635	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2764721	91196635	16152905	3391	59985											
C14orf159	80017	broad.mit.edu	37	chr14	91587193	91587193	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcactttggggaaagcctgGattgcttctcaaatacttac	8	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91587193	T	T	91587193	1	4	54	0	1	0	0	0	0	0	0	0	1768	1189	41	3		3	C14orf159	14	91587193	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	390558	91587193	15762347	3392	59986											
CPSF2	53981	broad.mit.edu	37	chr14	92622823	92622823	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attagagacttattatttagAccagaggatttcttagtgcc	8	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92622823	T	T	92622823	3	4	54	1	0	0	0	0	1	0	0	0	3857	289	10	5	1481	5	CPSF2	14	92622823	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1035630	92622823	14726717	3393	59987											
SLC24A4	123041	broad.mit.edu	37	chr14	92846735	92846735	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggcacgtggccgcattccTggcttcaggcaggatcctgc	13	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92846735	A	A	92846735	1	1	54	0	1	0	0	0	0	0	0	0	14582	1595	55	5		5	SLC24A4	14	92846735	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	223912	92846735	14502805	3394	59988											
BTBD7	55727	broad.mit.edu	37	chr14	93723643	93723643	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcttccatgtccaggtcCcgtctttttacacctctttt	5	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93723643	A	A	93723643	2	1	54	1	0	0	0	0	0	0	0	1	1556	610	22	2		2	BTBD7	14	93723643	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	876908	93723643	13625897	3395	59989											
KIAA1409	57578	broad.mit.edu	37	chr14	93877560	93877560	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaggcccctctgcctcTagaaaggtgagagaagagtg	15	8	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93877560	C	C	93877560	1	2	54	0	1	0	0	0	0	0	0	0	8300	1537	53	5		5	KIAA1409	14	93877560	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	153917	93877560	13471980	3396	59990											
KIAA1409	57578	broad.mit.edu	37	chr14	94007143	94007143	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacgatgataaacacgatcAgaggctgctcagtcaattcg	11	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94007143	T	T	94007143	3	4	54	1	0	0	0	0	1	0	0	0	8300	188	7	5	997	5	KIAA1409	14	94007143	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	129583	94007143	13342397	3397	59991											
KIAA1409	57578	broad.mit.edu	37	chr14	94079504	94079504	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcattacataccatgtagCcaacgttggttcagcataaa	8	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94079504	G	G	94079504	1	3	54	0	1	0	0	0	0	0	0	0	8300	754	26	4		4	KIAA1409	14	94079504	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	72361	94079504	13270036	3398	59992											
PRIMA1	145270	broad.mit.edu	37	chr14	94227766	94227766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagccctgcatgattttgGgactaacctccccagtctca	7	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94227766	T	T	94227766	1	4	54	0	1	0	0	0	0	0	0	0	12598	1247	43	2		2	PRIMA1	14	94227766	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	148262	94227766	13121774	3399	59993											
ASB2	51676	broad.mit.edu	37	chr14	94417093	94417094	+	Intron	DNP	GG	TT	TT													tagattataaatggcaaataGgtggtccgtgggccagaccc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	94417094	TT	TT	94417093	1	4	54	0	1	0	0	0	0	0	0	0	1027	1015	35	2		2	ASB2	14	94417093	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	189327	94417093	12932447	3400	59994											
PPP4R4	57718	broad.mit.edu	37	chr14	94665973	94665973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtagctctcagcagatggGggagccagaagagagacaga	15	7	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94665973	T	T	94665973	1	4	54	0	1	0	0	0	0	0	0	0	12506	1247	43	2		2	PPP4R4	14	94665973	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	248880	94665973	12683567	3401	59995											
SERPINA9	327657	broad.mit.edu	37	chr14	94940514	94940514	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacaagcaccaggggtctGtgcccctttctgtggaggct	13	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94940514	T	T	94940514	1	4	54	0	1	0	0	0	0	0	0	0	14208	1392	48	3		3	SERPINA9	14	94940514	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	274541	94940514	12409026	3402	59996											
SERPINA12	145264	broad.mit.edu	37	chr14	94961950	94961950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggggaatgatgacagGgacaaggtggaagagggaaa	18	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94961950	T	T	94961950	1	4	54	0	1	0	0	0	0	0	0	0	14202	1247	43	2		2	SERPINA12	14	94961950	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21436	94961950	12387590	3403	59997											
SERPINA5	5104	broad.mit.edu	37	chr14	95056465	95056465	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtgcgggtacccatgaTgagccgcgaggatcagtatc	15	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95056465	A	A	95056465	3	1	54	1	0	0	0	0	1	0	0	0	14205	1464	51	5	713	5	SERPINA5	14	95056465	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	94515	95056465	12293075	3404	59998											
CLMN	79789	broad.mit.edu	37	chr14	95676994	95676994	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatttgtaaaaaaaaattAttagaaagaaagagagaacc	6	3	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95676994	C	C	95676994	1	2	54	0	1	0	0	0	0	0	0	0	3574	464	16	5		5	CLMN	14	95676994	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	620529	95676994	11672546	3405	59999											
CLMN	79789	broad.mit.edu	37	chr14	95690107	95690107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatacgtaccagattccgcCcagacaggacttctaacaaa	6	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95690107	A	A	95690107	3	1	54	1	0	0	0	0	1	0	0	0	3574	623	22	2	2822	2	CLMN	14	95690107	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13113	95690107	11659433	3406	60000											
TCL1A	8115	broad.mit.edu	37	chr14	96180206	96180206	+	Intron	DEL	C	-	-													atagtgagtgctccttgagtCctcgcccttcctagggcatc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96180206	-	-	96180206	6	5	54	0	1	1	0	1	0	0	0	0	15826	870	30	0		0	TCL1A	14	96180206	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	490099	96180206	11169334	3407	60001											
BDKRB2	624	broad.mit.edu	37	chr14	96703407	96703407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttcttctctgttcagcCcaggtgtggcctcactcaca	7	14	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96703407	A	A	96703407	1	1	54	0	1	0	0	0	0	0	0	0	1398	638	22	2		2	BDKRB2	14	96703407	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	523201	96703407	10646133	3408	60002											
AK7	122481	broad.mit.edu	37	chr14	96871097	96871097	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaattttctttttcaggccAtctctcgagaagaccttctc	5	12	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96871097	G	G	96871097	3	3	54	1	0	0	0	0	1	0	0	0	444	217	8	5	308	5	AK7	14	96871097	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	167690	96871097	10478443	3409	60003											
AK7	122481	broad.mit.edu	37	chr14	96944912	96944912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaagaccgattcctccggGctctgagcaactaccgggac	11	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96944912	T	T	96944912	3	4	54	1	0	0	0	0	1	0	0	0	444	1203	42	3	1724	3	AK7	14	96944912	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	73815	96944912	10404628	3410	60004											
AK7	122481	broad.mit.edu	37	chr14	96953461	96953461	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcttacacctgtaatccCagcactttgggaggccaagg	12	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96953461	T	T	96953461	1	4	54	0	1	0	0	0	0	0	0	0	444	609	21	4		4	AK7	14	96953461	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8549	96953461	10396079	3411	60005											
PAPOLA	10914	broad.mit.edu	37	chr14	97002134	97002134	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataaaaaatagaatcattgGttcagtttaacaaggggtaa	8	3	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97002134	C	C	97002134	1	2	54	0	1	0	0	0	0	0	0	0	11523	1276	44	4		4	PAPOLA	14	97002134	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	48673	97002134	10347406	3412	60006											
EML1	2009	broad.mit.edu	37	chr14	100364625	100364625	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggacaagttgcgggcacaTcgaaggatggaaaagtgagt	15	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100364625	C	C	100364625	3	2	54	1	0	0	0	0	1	0	0	0	5138	1435	50	5	974	5	EML1	14	100364625	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3362491	100364625	6984915	3413	60007											
C14orf68	283600	broad.mit.edu	37	chr14	100792133	100792133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccttgcaggcgtctgcGgtgttgctgtgggctacccc	13	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100792133	T	T	100792133	3	4	54	1	0	0	0	0	1	0	0	0	1791	1116	39	1	43	1	C14orf68	14	100792133	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	427508	100792133	6557407	3414	60008											
C14orf68	283600	broad.mit.edu	37	chr14	100793356	100793356	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcctctggctcttcagGtccccccttgtgacctccat	8	17	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100793356	C	C	100793356	1	2	54	0	1	0	0	0	0	0	0	0	1791	1276	44	4		4	C14orf68	14	100793356	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1223	100793356	6556184	3415	60009											
WARS	7453	broad.mit.edu	37	chr14	100820131	100820131	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctataggcctggtccagggtCaggtccttccacagatactt	10	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100820131	G	G	100820131	2	3	54	1	0	0	0	0	0	0	0	1	17376	813	29	4		4	WARS	14	100820131	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	26775	100820131	6529409	3416	60010											
DYNC1H1	1778	broad.mit.edu	37	chr14	102508568	102508568	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtttccctgcaccaggctCtgcagaaggctttaaccaag	9	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102508568	T	T	102508568	3	4	54	1	0	0	0	0	1	0	0	0	4881	913	32	4	12484	4	DYNC1H1	14	102508568	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1688437	102508568	4840972	3417	60011											
C14orf73	91828	broad.mit.edu	37	chr14	103571471	103571471	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggggcgcgcgagcgccggGaacctggatggaggggagtg	23	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103571471	A	A	103571471	1	1	54	0	1	0	0	0	0	0	0	0	1792	1189	41	4		4	C14orf73	14	103571471	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1062903	103571471	3778069	3418	60012											
PACS2	23241	broad.mit.edu	37	chr14	105818725	105818725	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttaatcacagggctccaaacGaatcctgcggtcccatgaga	9	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105818725	A	A	105818725	3	1	54	1	0	0	0	0	1	0	0	0	11467	1058	37	4	228	4	PACS2	14	105818725	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2247254	105818725	1530815	3419	60013											
OR4N4	283694	broad.mit.edu	37	chr15	22317853	22317853	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttacatttcacatgtgagGtataataaaacaaccactct	4	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22317853	A	A	22317853	1	1	54	0	1	0	0	0	0	0	0	0	11172	1276	44	4		4	OR4N4	15	22317853	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		22317853	80213539	3420	60014											
OR4N4	283694	broad.mit.edu	37	chr15	22323771	22323771	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtctttttaatgtgttaTtggattcggtttgctagtat	9	4	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22323771	A	A	22323771	1	1	54	0	1	0	0	0	0	0	0	0	11172	1508	52	5		5	OR4N4	15	22323771	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5918	22323771	80207621	3421	60015											
OR4N4	283694	broad.mit.edu	37	chr15	22325352	22325352	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaactccaccaaaacactAttagaactgataaacaaatt	2	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22325352	G	G	22325352	1	3	54	0	1	0	0	0	0	0	0	0	11172	464	16	5		5	OR4N4	15	22325352	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1581	22325352	80206040	3422	60016											
OR4N4	283694	broad.mit.edu	37	chr15	22332626	22332626	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctctttcattgacctatGcctaagctgtgttactctgc	6	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22332626	T	T	22332626	1	4	54	0	1	0	0	0	0	0	0	0	11172	1334	46	3		3	OR4N4	15	22332626	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7274	22332626	80198766	3423	60017											
OR4N4	283694	broad.mit.edu	37	chr15	22333702	22333703	+	Intron	INS	-	G	G													ttcaaatgaaacaagatataINStctctttttgtgttcctttc					rs139048769	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22333703	G	G	22333702	6	5	54	0	1	1	1	0	0	0	0	0	11172	464	16	0		0	OR4N4	15	22333702	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	1076	22333702	80197690	3424	60018											
OR4N4	283694	broad.mit.edu	37	chr15	22345538	22345538	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgaggagtaaagaatgCcatgaggcggctatggagta	16	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22345538	G	G	22345538	1	3	54	0	1	0	0	0	0	0	0	0	11172	754	26	4		4	OR4N4	15	22345538	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11836	22345538	80185854	3425	60019											
OR4M2	390538	broad.mit.edu	37	chr15	22368930	22368930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcttgctcacagtgatgGcctttgacctctacactgct	8	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22368930	T	T	22368930	3	4	54	1	0	0	0	0	1	0	0	0	11170	1203	42	3	357	3	OR4M2	15	22368930	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23392	22368930	80162462	3426	60020											
OR4N4	283694	broad.mit.edu	37	chr15	22371611	22371611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacatatattggcatcttGtactgtttagacatcttaca	7	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22371611	T	T	22371611	1	4	54	0	1	0	0	0	0	0	0	0	11172	1392	48	3		3	OR4N4	15	22371611	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2681	22371611	80159781	3427	60021											
OR4N4	283694	broad.mit.edu	37	chr15	22371656	22371656	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggacagcccccagccccTgactcccacatggattatct	7	17	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22371656	A	A	22371656	1	1	54	0	1	0	0	0	0	0	0	0	11172	1595	55	5		5	OR4N4	15	22371656	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	45	22371656	80159736	3428	60022											
MAGEL2	54551	broad.mit.edu	37	chr15	23889166	23889166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagggggcctgctggtggGgccgtgggcactgtcaccgg	22	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23889166	T	T	23889166	3	4	54	1	0	0	0	0	1	0	0	0	9281	1232	43	2	29	2	MAGEL2	15	23889166	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1517510	23889166	78642226	3429	60023											
UBE3A	7337	broad.mit.edu	37	chr15	25589245	25589245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatttgatgcaacaatccCacttctaacaatttatctta	2	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25589245	A	A	25589245	1	1	54	0	1	0	0	0	0	0	0	0	17005	609	21	2		2	UBE3A	15	25589245	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1700079	25589245	76942147	3430	60024											
ATP10A	57194	broad.mit.edu	37	chr15	25958899	25958899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgatctcatcggtaagcgGgtgccggatcaccactgaca	12	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25958899	T	T	25958899	3	4	54	1	0	0	0	0	1	0	0	0	1120	1232	43	2	2281	2	ATP10A	15	25958899	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	369654	25958899	76572493	3431	60025											
ATP10A	57194	broad.mit.edu	37	chr15	25971134	25971134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatgcaaacaaggagcaGgacacaccagagcacgtcgc	11	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25971134	T	T	25971134	3	4	54	1	0	0	0	0	1	0	0	0	1120	991	35	2	3624	2	ATP10A	15	25971134	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12235	25971134	76560258	3432	60026											
GABRB3	2562	broad.mit.edu	37	chr15	26828476	26828476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacacagatacggatacaCacagctttcaatttccagag	7	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26828476	A	A	26828476	1	1	54	0	1	0	0	0	0	0	0	0	6228	493	17	3		3	GABRB3	15	26828476	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	857342	26828476	75702916	3433	60027											
GABRB3	2562	broad.mit.edu	37	chr15	26878539	26878540	+	Intron	DNP	CC	AA	AA													ctcccacccactctctcttcCctgtacctttagaaaacccc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26878540	AA	AA	26878539	1	1	54	0	1	0	0	0	0	0	0	0	6228	638	22	2		2	GABRB3	15	26878539	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	50063	26878539	75652853	3434	60028											
GABRB3	2562	broad.mit.edu	37	chr15	26952899	26952899	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacttaggcttggcaagtaGgtggacataggccttttaaa	11	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26952899	A	A	26952899	1	1	54	0	1	0	0	0	0	0	0	0	6228	1015	35	4		4	GABRB3	15	26952899	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	74360	26952899	75578493	3435	60029											
GABRB3	2562	broad.mit.edu	37	chr15	26998206	26998206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactgaccaaatggtgctgCaggctctgatacctcttgag	11	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26998206	A	A	26998206	1	1	54	0	1	0	0	0	0	0	0	0	6228	725	25	3		3	GABRB3	15	26998206	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	45307	26998206	75533186	3436	60030											
GABRG3	2567	broad.mit.edu	37	chr15	27573908	27573908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaacggccgccggccttgcCctgtgctgtgtgctgagcta	14	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27573908	A	A	27573908	1	1	54	0	1	0	0	0	0	0	0	0	6233	638	22	2		2	GABRG3	15	27573908	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	575702	27573908	74957484	3437	60031											
HERC2	8924	broad.mit.edu	37	chr15	28408160	28408160	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagatcaccggtgatccaTagcagctctcctttggagag	10	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28408160	A	A	28408160	1	1	54	0	1	0	0	0	0	0	0	0	7125	1421	49	5		5	HERC2	15	28408160	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	834252	28408160	74123232	3438	60032											
HERC2	8924	broad.mit.edu	37	chr15	28441170	28441170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaattcttccccgacaccCcatcctgatttttttaaaaa	2	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28441170	A	A	28441170	1	1	54	0	1	0	0	0	0	0	0	0	7125	638	22	2		2	HERC2	15	28441170	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	33010	28441170	74090222	3439	60033											
HERC2	8924	broad.mit.edu	37	chr15	28458898	28458898	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcacctactggtttcagcTgattcaatgggcaaacgcga	10	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28458898	A	A	28458898	3	1	54	1	0	0	0	0	1	0	0	0	7125	1580	55	5	7936	5	HERC2	15	28458898	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	17728	28458898	74072494	3440	60034											
TRPM1	4308	broad.mit.edu	37	chr15	31319017	31319017	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggactgagtgtggtgcttTtcacacgagcaagtagttga	13	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31319017	C	C	31319017	1	2	54	0	1	0	0	0	0	0	0	0	16710	1856	64	5		5	TRPM1	15	31319017	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2860119	31319017	71212375	3441	60035											
OTUD7A	161725	broad.mit.edu	37	chr15	32048161	32048161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgctagaaaggggttatgGgcttaagccttctgcaaagg	13	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32048161	A	A	32048161	1	1	54	0	1	0	0	0	0	0	0	0	11412	1247	43	4		4	OTUD7A	15	32048161	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	729144	32048161	70483231	3442	60036											
CHRNA7	1139	broad.mit.edu	37	chr15	32360464	32360464	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgaggctacagtgaactGtgattacactgcactctagc	10	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32360464	C	C	32360464	1	2	54	0	1	0	0	0	0	0	0	0	3419	1392	48	4		4	CHRNA7	15	32360464	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	312303	32360464	70170928	3443	60037											
CHRNA7	1139	broad.mit.edu	37	chr15	32365948	32365948	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggctagcaccacttgccCtctatcttgctccctctttt	6	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32365948	A	A	32365948	1	1	54	0	1	0	0	0	0	0	0	0	3419	696	24	2		2	CHRNA7	15	32365948	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5484	32365948	70165444	3444	60038											
RYR3	6263	broad.mit.edu	37	chr15	33673227	33673227	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataatctcctaaattgtttcCaatttccagtcttctgtctc	3	11	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33673227	T	T	33673227	1	4	54	0	1	0	0	0	0	0	0	0	13881	609	21	4		4	RYR3	15	33673227	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1307279	33673227	68858165	3445	60039											
RYR3	6263	broad.mit.edu	37	chr15	33945072	33945072	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaatggaaaggaactgggCacctgctaccaggtaagggc	14	10	0	0	rs61749016		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33945072	A	A	33945072	2	1	54	1	0	0	0	0	0	0	0	1	13881	697	25	3		3	RYR3	15	33945072	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	271845	33945072	68586320	3446	60040											
RYR3	6263	broad.mit.edu	37	chr15	33961613	33961613	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgcccagaggagattcGggaggagctgtatgatttcc	13	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33961613	A	A	33961613	3	1	54	1	0	0	0	0	1	0	0	0	13881	1116	39	4	5824	4	RYR3	15	33961613	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16541	33961613	68569779	3447	60041											
RYR3	6263	broad.mit.edu	37	chr15	33962620	33962620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttctgtggcttgctagGggttcctttggaagaagagg	15	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33962620	T	T	33962620	3	4	54	1	0	0	0	0	1	0	0	0	13881	1246	43	2	5873	2	RYR3	15	33962620	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1007	33962620	68568772	3448	60042											
RYR3	6263	broad.mit.edu	37	chr15	34018521	34018521	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttactgccagaggtttgGaggtggggtggagggaggtg	21	3	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34018521	T	T	34018521	1	4	54	0	1	0	0	0	0	0	0	0	13881	1189	41	3		3	RYR3	15	34018521	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	55901	34018521	68512871	3449	60043											
RYR3	6263	broad.mit.edu	37	chr15	34030922	34030922	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcacaagcatattacgCcaatccttgcccatctctct	3	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34030922	A	A	34030922	1	1	54	0	1	0	0	0	0	0	0	0	13881	754	26	3		3	RYR3	15	34030922	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	12401	34030922	68500470	3450	60044											
RYR3	6263	broad.mit.edu	37	chr15	34038351	34038351	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggcctttcaagacattaaCggagaaggtaagaagcaggc	12	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34038351	G	G	34038351	3	3	54	1	0	0	0	0	1	0	0	0	13881	536	19	4	8192	4	RYR3	15	34038351	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7429	34038351	68493041	3451	60045											
AVEN	57099	broad.mit.edu	37	chr15	34158965	34158965	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatgttaacaccctcagatGagtcctaaaattgaaggtat	7	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34158965	T	T	34158965	1	4	54	0	1	0	0	0	0	0	0	0	1231	1305	45	3		3	AVEN	15	34158965	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	120614	34158965	68372427	3452	60046											
C15orf55	256646	broad.mit.edu	37	chr15	34648871	34648871	+	Frame_Shift_Del	DEL	C	-	-													cttccaaagaaacccttccaCccacatgccaaggcaatctc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34648871	-	-	34648871	7	5	54	1	0	1	0	1	0	0	0	0	1816	507	18	0	2604	0	C15orf55	15	34648871	Frame_Shift_Del	DEL	C	TCGA-17-Z022-01A-01W-0746-08	489906	34648871	67882521	3453	60047											
ACTC1	70	broad.mit.edu	37	chr15	35085457	35085457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcatacctgtggtacggCcagaagcatacagggatagc	12	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35085457	A	A	35085457	3	1	54	1	0	0	0	0	1	0	0	0	195	739	26	3	710	3	ACTC1	15	35085457	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	436586	35085457	67445935	3454	60048											
AQR	9716	broad.mit.edu	37	chr15	35152405	35152405	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctagtaaaacaaccctagAaggtaacacttcaacataaa	4	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35152405	T	T	35152405	1	4	54	0	1	0	0	0	0	0	0	0	837	261	9	5		5	AQR	15	35152405	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	66948	35152405	67378987	3455	60049											
AQR	9716	broad.mit.edu	37	chr15	35165962	35165962	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acggccaaatggttaagtatCactgatttaggcatatgtca	9	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35165962	T	T	35165962	1	4	54	0	1	0	0	0	0	0	0	0	837	841	29	4		4	AQR	15	35165962	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13557	35165962	67365430	3456	60050											
AQR	9716	broad.mit.edu	37	chr15	35166691	35166691	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattaatgaatgaaatgaaGgaaataaattatttggtcca	7	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35166691	A	A	35166691	1	1	54	0	1	0	0	0	0	0	0	0	837	1015	35	4		4	AQR	15	35166691	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	729	35166691	67364701	3457	60051											
ATPBD4	89978	broad.mit.edu	37	chr15	35742976	35742976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctctgccaaagataagCtaaaggctggagattaagcc	10	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35742976	A	A	35742976	3	1	54	1	0	0	0	0	1	0	0	0	1206	797	28	3	408	3	ATPBD4	15	35742976	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	576285	35742976	66788416	3458	60052											
C15orf41	84529	broad.mit.edu	37	chr15	36910855	36910855	+	Intron	DEL	C	-	-													gaagtgttgagagttagttgCccagtgcctgcagatgagca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36910855	-	-	36910855	6	5	54	0	1	1	0	1	0	0	0	0	1808	754	26	0		0	C15orf41	15	36910855	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	1167879	36910855	65620537	3459	60053											
C15orf41	84529	broad.mit.edu	37	chr15	37085424	37085424	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttacctgcttgtctccCttactactgagagtccctga	6	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37085424	T	T	37085424	1	4	54	0	1	0	0	0	0	0	0	0	1808	696	24	4		4	C15orf41	15	37085424	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	174569	37085424	65445968	3460	60054											
MEIS2	4212	broad.mit.edu	37	chr15	37319596	37319597	+	Intron	DNP	CC	AA	AA													agtcaacttaccctgtaattCccaatcactccacttctcca					rs146330227	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	37319597	AA	AA	37319596	1	1	54	0	1	0	0	0	0	0	0	0	9561	870	30	3		3	MEIS2	15	37319596	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	234172	37319596	65211796	3461	60055											
BUB1B	701	broad.mit.edu	37	chr15	40462866	40462866	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgatcctcgatttctcaAtctctggcttaaattagtaa	6	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40462866	G	G	40462866	3	3	54	1	0	0	0	0	1	0	0	0	1581	101	4	5	382	5	BUB1B	15	40462866	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3143270	40462866	62068526	3462	60056											
IVD	3712	broad.mit.edu	37	chr15	40702824	40702824	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttgtaccacaccactcaCagttcagtatggcggctccg	8	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40702824	G	G	40702824	1	3	54	0	1	0	0	0	0	0	0	0	7998	493	17	4		4	IVD	15	40702824	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	239958	40702824	61828568	3463	60057											
TTBK2	146057	broad.mit.edu	37	chr15	43038398	43038398	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgaagaatttgggccagGcgggagaaaaggtctgagtc	15	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43038398	A	A	43038398	2	1	54	1	0	0	0	0	0	0	0	1	16803	1190	42	4		4	TTBK2	15	43038398	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2335574	43038398	59492994	3464	60058											
UBR1	197131	broad.mit.edu	37	chr15	43244649	43244649	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgcagaccgtgggcacctCaaaagagaagaaaacattta	9	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43244649	G	G	43244649	1	3	54	0	1	0	0	0	0	0	0	0	17027	841	29	4		4	UBR1	15	43244649	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	206251	43244649	59286743	3465	60059											
FRMD5	84978	broad.mit.edu	37	chr15	44241534	44241534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccttcacaatgggatggGctttccatcccttttaaaaa	6	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44241534	T	T	44241534	1	4	54	0	1	0	0	0	0	0	0	0	6113	1218	42	3		3	FRMD5	15	44241534	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	996885	44241534	58289858	3466	60060											
DUOX1	53905	broad.mit.edu	37	chr15	45456914	45456914	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggagctaccccttcctctGaacactgcgttatccctgcc	8	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45456914	C	C	45456914	1	2	54	0	1	0	0	0	0	0	0	0	4840	1305	45	4		4	DUOX1	15	45456914	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1215380	45456914	57074478	3467	60061											
SQRDL	58472	broad.mit.edu	37	chr15	45962136	45962136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgttgcagatctcctaccGatatcttattattgctctcg	7	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45962136	T	T	45962136	3	4	54	1	0	0	0	0	1	0	0	0	15247	1058	37	3	426	3	SQRDL	15	45962136	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	505222	45962136	56569256	3468	60062											
SEMA6D	80031	broad.mit.edu	37	chr15	47778996	47778996	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctaaatctgtactaccattGactacagatgtaatgcatgg	8	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47778996	C	C	47778996	1	2	54	0	1	0	0	0	0	0	0	0	14155	1305	45	4		4	SEMA6D	15	47778996	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1816860	47778996	54752396	3469	60063											
SLC12A1	6557	broad.mit.edu	37	chr15	48541794	48541794	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactgaacaccattgctccCatcatctccaactttttcct	3	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48541794	T	T	48541794	2	4	54	1	0	0	0	0	0	0	0	1	14495	581	21	4		4	SLC12A1	15	48541794	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	762798	48541794	53989598	3470	60064											
SECISBP2L	9728	broad.mit.edu	37	chr15	49296924	49296924	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggttgctcagtttccaCgtagttgtgcagttttgagt	11	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49296924	A	A	49296924	1	1	54	0	1	0	0	0	0	0	0	0	14120	551	19	3		3	SECISBP2L	15	49296924	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	755130	49296924	53234468	3471	60065											
USP50	373509	broad.mit.edu	37	chr15	50831179	50831179	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcaaagtcaacaaatccaGaagacaacagtctcactagc	5	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50831179	T	T	50831179	1	4	54	0	1	0	0	0	0	0	0	0	17209	957	33	3		3	USP50	15	50831179	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1534255	50831179	51700213	3472	60066											
CYP19A1	1588	broad.mit.edu	37	chr15	51501054	51501054	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgcatttcactttgactGtgtagacatagacattggct	8	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51501054	T	T	51501054	1	4	54	0	1	0	0	0	0	0	0	0	4181	1392	48	3		3	CYP19A1	15	51501054	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	669875	51501054	51030338	3473	60067											
CYP19A1	1588	broad.mit.edu	37	chr15	51510758	51510758	+	Frame_Shift_Del	DEL	G	-	-													acagacttctcatactttttGtatagccaagaaatcttaaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51510758	-	-	51510758	7	5	54	1	0	1	0	1	0	0	0	0	4181	1372	48	0	808	0	CYP19A1	15	51510758	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	9704	51510758	51020634	3474	60068											
MYO5A	4644	broad.mit.edu	37	chr15	52632272	52632272	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctgctggagtaagagGggtaacaagtacagaggggt	16	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52632272	A	A	52632272	1	1	54	0	1	0	0	0	0	0	0	0	10172	1247	43	4		4	MYO5A	15	52632272	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1121514	52632272	49899120	3475	60069											
WDR72	256764	broad.mit.edu	37	chr15	53901819	53901819	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagaacacacttgtatctTtagagtattaaaaatggata	6	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53901819	A	A	53901819	1	1	54	0	1	0	0	0	0	0	0	0	17449	1856	64	5		5	WDR72	15	53901819	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1269547	53901819	48629573	3476	60070											
UNC13C	440279	broad.mit.edu	37	chr15	54531976	54531976	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcttatctgttagatttAtgatgccatgtaatattttg	6	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54531976	T	T	54531976	1	4	54	0	1	0	0	0	0	0	0	0	17112	464	16	5		5	UNC13C	15	54531976	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	630157	54531976	47999416	3477	60071											
MNS1	55329	broad.mit.edu	37	chr15	56757335	56757335	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctccgctcgaccaaaagTgacccacgcagaacgtggcc	10	17	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56757335	A	A	56757335	1	1	54	0	1	0	0	0	0	0	0	0	9771	1710	59	5		5	MNS1	15	56757335	5'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2225359	56757335	45774057	3478	60072											
ALDH1A2	8854	broad.mit.edu	37	chr15	58257750	58257750	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaacaactggttcagtcgtCaactgaaaagtgctctttcc	7	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58257750	A	A	58257750	1	1	54	0	1	0	0	0	0	0	0	0	491	841	29	3		3	ALDH1A2	15	58257750	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1500415	58257750	44273642	3479	60073											
LIPC	3990	broad.mit.edu	37	chr15	58805848	58805848	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgaggattggaaagctGactacttaaacttttagcac	10	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58805848	A	A	58805848	1	1	54	0	1	0	0	0	0	0	0	0	8893	1305	45	4		4	LIPC	15	58805848	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	548098	58805848	43725544	3480	60074											
LIPC	3990	broad.mit.edu	37	chr15	58812788	58812788	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagaatttcctcagttgcatCctatggactatcagtcccag	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58812788	G	G	58812788	1	3	54	0	1	0	0	0	0	0	0	0	8893	870	30	4		4	LIPC	15	58812788	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6940	58812788	43718604	3481	60075											
RORA	6095	broad.mit.edu	37	chr15	60803725	60803725	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcctctccaggctgctGctggtggtcgcgctgctgct	13	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60803725	C	C	60803725	3	2	54	1	0	0	0	0	1	0	0	0	13639	1328	46	4	1079	4	RORA	15	60803725	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1990937	60803725	41727667	3482	60076											
RORA	6095	broad.mit.edu	37	chr15	60948265	60948265	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgatctatttttgagataTaggttcagagaaaaattgat	9	2	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60948265	C	C	60948265	1	2	54	0	1	0	0	0	0	0	0	0	13639	1421	49	5		5	RORA	15	60948265	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	144540	60948265	41583127	3483	60077											
ANKDD1A	348094	broad.mit.edu	37	chr15	65242138	65242138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccacggctggtgagaaCcccagcaaagcgctgttcga	14	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65242138	A	A	65242138	3	1	54	1	0	0	0	0	1	0	0	0	624	506	18	3	1482	3	ANKDD1A	15	65242138	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4293873	65242138	37289254	3484	60078											
MEGF11	84465	broad.mit.edu	37	chr15	66458271	66458271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccaggtgccaggtagcCctgccaggcagggtggctga	16	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66458271	A	A	66458271	1	1	54	0	1	0	0	0	0	0	0	0	9554	638	22	2		2	MEGF11	15	66458271	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1216133	66458271	36073121	3485	60079											
MEGF11	84465	broad.mit.edu	37	chr15	66491104	66491104	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtgctggattactggtgtGagccaccgagcccagcctcc	12	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66491104	T	T	66491104	1	4	54	0	1	0	0	0	0	0	0	0	9554	1305	45	3		3	MEGF11	15	66491104	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	32833	66491104	36040288	3486	60080											
MAP2K1	5604	broad.mit.edu	37	chr15	66773582	66773582	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgccacacatatttgtaaGaaaaagacccacatgctcca	5	13	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66773582	C	C	66773582	1	2	54	0	1	0	0	0	0	0	0	0	9328	957	33	4		4	MAP2K1	15	66773582	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	282478	66773582	35757810	3487	60081											
LBXCOR1	390598	broad.mit.edu	37	chr15	68118621	68118621	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catctcgtcgcgccgctgcgGcatgatcactaagcgagagg	13	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68118621	C	C	68118621	3	2	54	1	0	0	0	0	1	0	0	0	8727	1203	42	4	434	4	LBXCOR1	15	68118621	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1345039	68118621	34412771	3488	60082											
ITGA11	22801	broad.mit.edu	37	chr15	68698723	68698723	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctccagccatactgaccctCtcgctgtccttccaacttca	4	19	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68698723	T	T	68698723	1	4	54	0	1	0	0	0	0	0	0	0	7944	928	32	4		4	ITGA11	15	68698723	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	580102	68698723	33832669	3489	60083											
CORO2B	10391	broad.mit.edu	37	chr15	69018153	69018153	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgctctctcctgggccctCcttggccccctctcttcctc	6	22	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69018153	A	A	69018153	1	1	54	0	1	0	0	0	0	0	0	0	3789	870	30	3		3	CORO2B	15	69018153	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	319430	69018153	33513239	3490	60084											
TLE3	7090	broad.mit.edu	37	chr15	70343637	70343637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctggctccaggctcctcCtgttcttcctgctgctatcc	7	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70343637	A	A	70343637	1	1	54	0	1	0	0	0	0	0	0	0	16063	696	24	2		2	TLE3	15	70343637	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1325484	70343637	32187755	3491	60085											
UACA	55075	broad.mit.edu	37	chr15	70958577	70958577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtagaaaggagggaaaGgacattctgggtgaggggat	17	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70958577	T	T	70958577	1	4	54	0	1	0	0	0	0	0	0	0	16950	1015	35	2		2	UACA	15	70958577	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	614940	70958577	31572815	3492	60086											
ISLR2	57611	broad.mit.edu	37	chr15	74424811	74424811	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcgagctgcggagcccacgGaggggccagctccagcgtga	18	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74424811	A	A	74424811	1	1	54	0	1	0	0	0	0	0	0	0	7929	1189	41	4		4	ISLR2	15	74424811	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3466234	74424811	28106581	3493	60087											
SNUPN	10073	broad.mit.edu	37	chr15	75902891	75902891	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcttctctcctccatctcCacctgcaaccacaccatgct	4	19	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75902891	T	T	75902891	1	4	54	0	1	0	0	0	0	0	0	0	14991	609	21	4		4	SNUPN	15	75902891	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1478080	75902891	26628501	3494	60088											
SNX33	257364	broad.mit.edu	37	chr15	75942361	75942361	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggacttcatcgaaaagcgGaagcggagactcatcctctg	12	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75942361	T	T	75942361	2	4	54	1	0	0	0	0	0	0	0	1	15017	1161	41	3		3	SNX33	15	75942361	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	39470	75942361	26589031	3495	60089											
TBC1D2B	23102	broad.mit.edu	37	chr15	78352628	78352628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctttatgccaacaatAaacagtgggaaacaagttta	6	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78352628	T	T	78352628	1	4	54	0	1	0	0	0	0	0	0	0	15738	377	13	5		5	TBC1D2B	15	78352628	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2410267	78352628	24178764	3496	60090											
CHRNA5	1138	broad.mit.edu	37	chr15	78858553	78858553	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagagactctggggttcattCtaggggttgggacttatctt	13	6	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78858553	G	G	78858553	1	3	54	0	1	0	0	0	0	0	0	0	3417	928	32	4		4	CHRNA5	15	78858553	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	505925	78858553	23672839	3497	60091											
MORF4L1	10933	broad.mit.edu	37	chr15	79189395	79189395	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggctcctcctgagtaccatCggaaagctgtgtgagaggca	13	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79189395	G	G	79189395	3	3	54	1	0	0	0	0	1	0	0	0	9800	875	31	4	1125	4	MORF4L1	15	79189395	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	330842	79189395	23341997	3498	60092											
AP3B2	8120	broad.mit.edu	37	chr15	83360619	83360619	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatgtaggaagtttcactAtcatgagagtggaatttagt	11	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83360619	C	C	83360619	1	2	54	0	1	0	0	0	0	0	0	0	747	464	16	5		5	AP3B2	15	83360619	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4171224	83360619	19170773	3499	60093											
HOMER2	9455	broad.mit.edu	37	chr15	83550450	83550450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagtaattttacatttcCaaaagaaaataccaaataag	4	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83550450	A	A	83550450	1	1	54	0	1	0	0	0	0	0	0	0	7346	609	21	2		2	HOMER2	15	83550450	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	189831	83550450	18980942	3500	60094											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84637949	84637949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcacgcctataatcccaGcactttgggaggccgaggca	10	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84637949	T	T	84637949	1	4	54	0	1	0	0	0	0	0	0	0	276	986	34	3		3	ADAMTSL3	15	84637949	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1087499	84637949	17893443	3501	60095											
AGBL1	123624	broad.mit.edu	37	chr15	86801284	86801284	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtacaccagcccatgctTctaatgatgtccatagtcac	7	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86801284	C	C	86801284	1	2	54	0	1	0	0	0	0	0	0	0	375	1798	62	5		5	AGBL1	15	86801284	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2163335	86801284	15730108	3502	60096											
AGBL1	123624	broad.mit.edu	37	chr15	86875137	86875137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagaaactacaaagcaacaGgctaacaacttcacagtgga	8	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86875137	T	T	86875137	1	4	54	0	1	0	0	0	0	0	0	0	375	1015	35	2		2	AGBL1	15	86875137	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	73853	86875137	15656255	3503	60097											
AGBL1	123624	broad.mit.edu	37	chr15	86915447	86915447	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatttggaatgagaatgtcCcaattcagccaagagtagca	11	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86915447	T	T	86915447	1	4	54	0	1	0	0	0	0	0	0	0	375	638	22	4		4	AGBL1	15	86915447	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	40310	86915447	15615945	3504	60098											
AGBL1	123624	broad.mit.edu	37	chr15	87089366	87089366	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggaggtcaactacagggTaagccgctgtggggaatgac	16	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87089366	A	A	87089366	5	1	54	1	0	0	0	0	0	0	1	0	375	1652	57	5	2751	5	AGBL1	15	87089366	Splice_Site	SNP	T	TCGA-17-Z022-01A-01W-0746-08	173919	87089366	15442026	3505	60099											
AGBL1	123624	broad.mit.edu	37	chr15	87123735	87123735	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttctagactttgttacaTgcatatttttctagactagt	5	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87123735	A	A	87123735	1	1	54	0	1	0	0	0	0	0	0	0	375	1479	51	5		5	AGBL1	15	87123735	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	34369	87123735	15407657	3506	60100											
AGBL1	123624	broad.mit.edu	37	chr15	87258528	87258528	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatttctataatggcaaatTatccttatcacccagcggag	6	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87258528	A	A	87258528	1	1	54	0	1	0	0	0	0	0	0	0	375	1769	61	5		5	AGBL1	15	87258528	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	134793	87258528	15272864	3507	60101											
AGBL1	123624	broad.mit.edu	37	chr15	87564381	87564381	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtactggtaaaagaacaGacacatagaccagtggaaca	10	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87564381	C	C	87564381	1	2	54	0	1	0	0	0	0	0	0	0	375	957	33	4		4	AGBL1	15	87564381	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	305853	87564381	14967011	3508	60102											
NTRK3	4916	broad.mit.edu	37	chr15	88483884	88483884	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaagcatcttgtccttggtCgggctgaggttgtagcactc	12	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88483884	A	A	88483884	2	1	54	1	0	0	0	0	0	0	0	1	10803	871	31	3		3	NTRK3	15	88483884	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	919503	88483884	14047508	3509	60103											
NTRK3	4916	broad.mit.edu	37	chr15	88533306	88533306	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaattataaaccaaatcctAtaataatgacttggagtcct	4	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88533306	T	T	88533306	1	4	54	0	1	0	0	0	0	0	0	0	10803	464	16	5		5	NTRK3	15	88533306	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	49422	88533306	13998086	3510	60104											
NTRK3	4916	broad.mit.edu	37	chr15	88600980	88600980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactcccacttccagccacCcagggctgcacccatagcct	7	19	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88600980	A	A	88600980	1	1	54	0	1	0	0	0	0	0	0	0	10803	638	22	2		2	NTRK3	15	88600980	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	67674	88600980	13930412	3511	60105											
NTRK3	4916	broad.mit.edu	37	chr15	88678516	88678516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttggactcccgcagaggCtgcccattgtgcagccagtg	12	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88678516	A	A	88678516	3	1	54	1	0	0	0	0	1	0	0	0	10803	796	28	3	1805	3	NTRK3	15	88678516	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	77536	88678516	13852876	3512	60106											
NTRK3	4916	broad.mit.edu	37	chr15	88679618	88679618	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctatagtaacaagacCgcaaattttccctcttcttc	3	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88679618	A	A	88679618	1	1	54	0	1	0	0	0	0	0	0	0	10803	667	23	1		1	NTRK3	15	88679618	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1102	88679618	13851774	3513	60107											
NTRK3	4916	broad.mit.edu	37	chr15	88792254	88792254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctagggagaggccatgcCtggaggagctgctgggaaaa	17	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88792254	A	A	88792254	1	1	54	0	1	0	0	0	0	0	0	0	10803	696	24	2		2	NTRK3	15	88792254	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112636	88792254	13739138	3514	60108											
ACAN	176	broad.mit.edu	37	chr15	89386683	89386683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctggccaccacgggccaGctctacctggcctggcaggc	14	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89386683	T	T	89386683	3	4	54	1	0	0	0	0	1	0	0	0	117	962	34	3	873	3	ACAN	15	89386683	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	594429	89386683	13144709	3515	60109											
FANCI	55215	broad.mit.edu	37	chr15	89848997	89848997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattcatattgggtcggtGcataaaaatggagcccctga	10	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89848997	T	T	89848997	1	4	54	0	1	0	0	0	0	0	0	0	5726	1334	46	3		3	FANCI	15	89848997	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	462314	89848997	12682395	3516	60110											
KIF7	374654	broad.mit.edu	37	chr15	90188559	90188559	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctctctgcatcccaccCagcttacctctggaccctgg	8	19	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90188559	A	A	90188559	1	1	54	0	1	0	0	0	0	0	0	0	8379	609	21	2		2	KIF7	15	90188559	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	339562	90188559	12342833	3517	60111											
WDR93	56964	broad.mit.edu	37	chr15	90286387	90286387	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgtaccaggctgagccctGaggacacagaggcgatgcag	15	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90286387	C	C	90286387	1	2	54	0	1	0	0	0	0	0	0	0	17467	1305	45	4		4	WDR93	15	90286387	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	97828	90286387	12245005	3518	60112											
ANPEP	290	broad.mit.edu	37	chr15	90347685	90347685	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaactccgggagtggagctCcatccactgcctccctcctc	9	17	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90347685	G	G	90347685	1	3	54	0	1	0	0	0	0	0	0	0	710	870	30	4		4	ANPEP	15	90347685	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	61298	90347685	12183707	3519	60113											
AP3S2	10239	broad.mit.edu	37	chr15	90454018	90454018	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgctgtgccgagatacatcGatcagttctccctccagcag	9	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90454018	C	C	90454018	3	2	54	1	0	0	0	0	1	0	0	0	752	1048	37	4		4	AP3S2	15	90454018	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	106333	90454018	12077374	3520	60114											
UNC45A	55898	broad.mit.edu	37	chr15	91492490	91492490	+	Intron	DEL	C	-	-													attactgctgtgagaagggtCcccctttctctgtgagtcag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	91492490	-	-	91492490	6	5	54	0	1	1	0	1	0	0	0	0	17114	870	30	0		0	UNC45A	15	91492490	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	1038472	91492490	11038902	3521	60115											
UNC45A	55898	broad.mit.edu	37	chr15	91496492	91496492	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgccgggggcttggcCatgcttacctccatgcggcc	14	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91496492	T	T	91496492	2	4	54	1	0	0	0	0	0	0	0	1	17114	581	21	4		4	UNC45A	15	91496492	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4002	91496492	11034900	3522	60116											
VPS33B	26276	broad.mit.edu	37	chr15	91550237	91550237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcggcccttggtttcgccatCctcctcctcctccaggttcc	7	19	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91550237	A	A	91550237	3	1	54	1	0	0	0	0	1	0	0	0	17329	855	30	3	1270	3	VPS33B	15	91550237	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	53745	91550237	10981155	3523	60117											
MCTP2	55784	broad.mit.edu	37	chr15	94903134	94903134	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggagttcagtacctgtGgaatgttgctccggtgtctc	14	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94903134	A	A	94903134	1	1	54	0	1	0	0	0	0	0	0	0	9494	1363	47	4		4	MCTP2	15	94903134	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3352897	94903134	7628258	3524	60118											
MCTP2	55784	broad.mit.edu	37	chr15	94927252	94927252	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtatgttatctttccaggGaagagtgacccattttgctt	10	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94927252	T	T	94927252	2	4	54	1	0	0	0	0	0	0	0	1	9494	1188	41	3		3	MCTP2	15	94927252	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	24118	94927252	7604140	3525	60119											
MCTP2	55784	broad.mit.edu	37	chr15	95001378	95001378	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctaggaatctgagaaaAaggggttgattgaaagaatc	11	3	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95001378	G	G	95001378	3	3	54	1	0	0	0	0	1	0	0	0	9494	15	1	5	2413	5	MCTP2	15	95001378	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	74126	95001378	7530014	3526	60120											
FAM169B	283777	broad.mit.edu	37	chr15	99045882	99045882	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggagaggacaaaccaagGcactgtgctgagaaaggaga	15	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99045882	C	C	99045882	1	2	54	0	1	0	0	0	0	0	0	0	5533	1218	42	4		4	FAM169B	15	99045882	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4044504	99045882	3485510	3527	60121											
IGF1R	3480	broad.mit.edu	37	chr15	99288381	99288381	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatagggagaaggaagtcatGcttctcaagtaaagcaacag	11	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99288381	C	C	99288381	1	2	54	0	1	0	0	0	0	0	0	0	7641	1334	46	4		4	IGF1R	15	99288381	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	242499	99288381	3243011	3528	60122											
TTC23	64927	broad.mit.edu	37	chr15	99696448	99696448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccacctcgggactgaaatCgccaaatgcttccactttgg	9	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99696448	A	A	99696448	3	1	54	1	0	0	0	0	1	0	0	0	16816	884	31	3	307	3	TTC23	15	99696448	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	408067	99696448	2834944	3529	60123											
ADAMTS17	170691	broad.mit.edu	37	chr15	100802542	100802542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcttgcttgaaaggtgCctgtggggacttacgggacg	15	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100802542	A	A	100802542	1	1	54	0	1	0	0	0	0	0	0	0	262	754	26	3		3	ADAMTS17	15	100802542	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1106094	100802542	1728850	3530	60124											
TARSL2	123283	broad.mit.edu	37	chr15	102215970	102215970	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaaatgaaacattcaaaTagaacatcaaattcatttat	3	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102215970	C	C	102215970	1	2	54	0	1	0	0	0	0	0	0	0	15680	1421	49	5		5	TARSL2	15	102215970	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1413428	102215970	315422	3531	60125											
AXIN1	8312	broad.mit.edu	37	chr16	364636	364636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctggggccagggcatagCcggcattgacataatagggg	17	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	364636	A	A	364636	3	1	54	1	0	0	0	0	1	0	0	0	1241	739	26	3	1698	3	AXIN1	16	364636	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08		364636	89990117	3532	60126											
NARFL	64428	broad.mit.edu	37	chr16	780984	780984	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccttctccagtgtcacctCctggaagtctttgttcctgg	8	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	780984	A	A	780984	4	1	54	1	0	0	0	0	0	1	0	0	10262	864	30	3	387	3	NARFL	16	780984	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	416348	780984	89573769	3533	60127											
UBE2I	7329	broad.mit.edu	37	chr16	1374771	1374771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagggtccgagcacaaGccaagaagtttgcgccctca	11	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1374771	T	T	1374771	3	4	54	1	0	0	0	0	1	0	0	0	16985	971	34	3	476	3	UBE2I	16	1374771	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	593787	1374771	88979982	3534	60128											
RPL3L	6123	broad.mit.edu	37	chr16	2001034	2001034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccggggcagctccccaGgcctatcctgcccccacctc	8	22	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2001034	T	T	2001034	1	4	54	0	1	0	0	0	0	0	0	0	13705	1015	35	2		2	RPL3L	16	2001034	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	626263	2001034	88353719	3535	60129											
TIGD7	91151	broad.mit.edu	37	chr16	3350041	3350041	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatatctttcctacttgcctGagaattttctggcattgact	7	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3350041	A	A	3350041	4	1	54	1	0	0	0	0	0	1	0	0	16024	1299	45	4	1079	4	TIGD7	16	3350041	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1349007	3350041	87004712	3536	60130											
NAT15	79903	broad.mit.edu	37	chr16	3532549	3532549	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttgacacacaagtcgcGtacatcctaagtctgggcgt	10	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3532549	T	T	3532549	2	4	54	1	0	0	0	0	0	0	0	1	10270	1132	40	3		3	NAT15	16	3532549	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	182508	3532549	86822204	3537	60131											
BTBD12	84464	broad.mit.edu	37	chr16	3658545	3658545	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaggcaagcacaccccCctccccattcacagagtggg	10	16	1	2	rs137976282	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3658545	A	A	3658545	3	1	54	1	0	0	0	0	1	0	0	0	1549	623	22	2	5139	2	BTBD12	16	3658545	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	125996	3658545	86696208	3538	60132											
CORO7	79585	broad.mit.edu	37	chr16	4462500	4462500	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctccttgcccagggatcCcagagatgaaatccagcagc	9	15	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4462500	G	G	4462500	1	3	54	0	1	0	0	0	0	0	0	0	3791	638	22	4		4	CORO7	16	4462500	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	803955	4462500	85892253	3539	60133											
A2BP1	54715	broad.mit.edu	37	chr16	6497095	6497095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaacttcgaaaaccgcaCaccagattgcgaactgttaa	8	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6497095	A	A	6497095	1	1	54	0	1	0	0	0	0	0	0	0	3	493	17	3		3	A2BP1	16	6497095	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2034595	6497095	83857658	3540	60134											
A2BP1	54715	broad.mit.edu	37	chr16	6920688	6920688	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccataaccataattttacagCacagtttaattatttggttc	4	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6920688	G	G	6920688	1	3	54	0	1	0	0	0	0	0	0	0	3	725	25	4		4	A2BP1	16	6920688	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	423593	6920688	83434065	3541	60135											
A2BP1	54715	broad.mit.edu	37	chr16	7388956	7388956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacctgatataaatgctGgtggcgtcatttactctgag	10	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7388956	T	T	7388956	1	4	54	0	1	0	0	0	0	0	0	0	3	1363	47	2		2	A2BP1	16	7388956	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	468268	7388956	82965797	3542	60136											
A2BP1	54715	broad.mit.edu	37	chr16	7441850	7441850	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgggttacacaaccagCctgtccagacactgattctt	8	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7441850	T	T	7441850	1	4	54	0	1	0	0	0	0	0	0	0	3	754	26	4		4	A2BP1	16	7441850	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	52894	7441850	82912903	3543	60137											
A2BP1	54715	broad.mit.edu	37	chr16	7568279	7568279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccccgcgccagagtacaCaggccagaccacggttcccg	10	19	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7568279	A	A	7568279	3	1	54	1	0	0	0	0	1	0	0	0	3	478	17	3	255	3	A2BP1	16	7568279	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	126429	7568279	82786474	3544	60138											
C16orf68	79091	broad.mit.edu	37	chr16	8722919	8722919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcacaggaagaagacgacGtcctgggagaggaagcacaa	14	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8722919	T	T	8722919	3	4	54	1	0	0	0	0	1	0	0	0	1841	1145	40	3	472	3	C16orf68	16	8722919	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1154640	8722919	81631834	3545	60139											
NUBP1	4682	broad.mit.edu	37	chr16	10863034	10863034	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcacatccagccagacccGaccagctccgggatggggtg	13	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10863034	A	A	10863034	1	1	54	0	1	0	0	0	0	0	0	0	10810	1073	37	4		4	NUBP1	16	10863034	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2140115	10863034	79491719	3546	60140											
LITAF	9516	broad.mit.edu	37	chr16	11647369	11647369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcaggatggcttggggcCaagtgggaggcagactcacc	18	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11647369	A	A	11647369	1	1	54	0	1	0	0	0	0	0	0	0	8904	609	21	2		2	LITAF	16	11647369	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	784335	11647369	78707384	3547	60141											
RUNDC2A	84127	broad.mit.edu	37	chr16	12140140	12140140	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catatccctcttggggtgacCaggtgcagatcttccaggga	12	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12140140	T	T	12140140	1	4	54	0	1	0	0	0	0	0	0	0	13854	609	21	4		4	RUNDC2A	16	12140140	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	492771	12140140	78214613	3548	60142											
ERCC4	2072	broad.mit.edu	37	chr16	14042044	14042044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaatgccaaaaactgccGctccttgatgcaccacgtta	9	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14042044	T	T	14042044	3	4	54	1	0	0	0	0	1	0	0	0	5257	1087	38	3	2633	3	ERCC4	16	14042044	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1901904	14042044	76312709	3549	60143											
MYH11	4629	broad.mit.edu	37	chr16	15865159	15865159	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccactgtgcctaacctcCctgaacttctcaacattctg	5	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15865159	T	T	15865159	1	4	54	0	1	0	0	0	0	0	0	0	10125	638	22	4		4	MYH11	16	15865159	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1823115	15865159	74489594	3550	60144											
ABCC1	4363	broad.mit.edu	37	chr16	16161829	16161829	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttatccagttcattcccAgagtgtttagtgagcacctg	9	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16161829	T	T	16161829	1	4	54	0	1	0	0	0	0	0	0	0	49	203	7	5		5	ABCC1	16	16161829	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	296670	16161829	74192924	3551	60145											
NOMO2	283820	broad.mit.edu	37	chr16	18562584	18562584	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaatctcactcctaaatAcacctgctgcgttctacacg	4	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18562584	C	C	18562584	1	2	54	0	1	0	0	0	0	0	0	0	10627	406	14	5		5	NOMO2	16	18562584	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2400755	18562584	71792169	3552	60146											
SMG1	23049	broad.mit.edu	37	chr16	18861461	18861461	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaggaatctaagagtgaaaGatgaggggaataaataagaa	12	1	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18861461	C	C	18861461	1	2	54	0	1	0	0	0	0	0	0	0	14909	957	33	4		4	SMG1	16	18861461	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	298877	18861461	71493292	3553	60147											
TMC5	79838	broad.mit.edu	37	chr16	19477481	19477481	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgggaacagcggggcatcCtacaacatgcagctggccta	12	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19477481	T	T	19477481	2	4	54	1	0	0	0	0	0	0	0	1	16111	668	24	4		4	TMC5	16	19477481	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	616020	19477481	70877272	3554	60148											
C16orf88	400506	broad.mit.edu	37	chr16	19725533	19725533	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgatgactggctgctctacCttctttttggacttcatctt	7	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19725533	T	T	19725533	2	4	54	1	0	0	0	0	0	0	0	1	1855	680	24	4		4	C16orf88	16	19725533	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	248052	19725533	70629220	3555	60149											
GPR139	124274	broad.mit.edu	37	chr16	20058629	20058629	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttaatagagatagggtttCactatgttggccaggctggt	12	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20058629	T	T	20058629	1	4	54	0	1	0	0	0	0	0	0	0	6713	841	29	4		4	GPR139	16	20058629	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	333096	20058629	70296124	3556	60150											
PDILT	204474	broad.mit.edu	37	chr16	20384206	20384206	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttttggagacaaacagcAgcatgtgactcatgatgtgc	11	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20384206	G	G	20384206	3	3	54	1	0	0	0	0	1	0	0	0	11768	188	7	5	942	5	PDILT	16	20384206	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	325577	20384206	69970547	3557	60151											
ACSM5	54988	broad.mit.edu	37	chr16	20432565	20432565	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtagtgccacctagtgtAtttacgttttacagggaggc	13	7	0	0	rs150898672	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20432565	T	T	20432565	1	4	54	0	1	0	0	0	0	0	0	0	187	464	16	5		5	ACSM5	16	20432565	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	48359	20432565	69922188	3558	60152											
ACSM2B	348158	broad.mit.edu	37	chr16	20563816	20563817	+	Intron	INS	-	A	A													tccacacatcctgcattgatINSaggagatgaatgttcggaag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20563817	A	A	20563816	6	5	54	0	1	1	1	0	0	0	0	0	184	1421	49	0		0	ACSM2B	16	20563816	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	131251	20563816	69790937	3559	60153											
ACSM2B	348158	broad.mit.edu	37	chr16	20575840	20575840	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtctctttcccataccaTactgccttcatggaagatga	7	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20575840	C	C	20575840	1	2	54	0	1	0	0	0	0	0	0	0	184	1421	49	5		5	ACSM2B	16	20575840	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	12024	20575840	69778913	3560	60154											
ERI2	112479	broad.mit.edu	37	chr16	20865107	20865107	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgttttagaggcatacTttttaagtgaggaaaacatc	10	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20865107	A	A	20865107	1	1	54	0	1	0	0	0	0	0	0	0	5270	1624	56	5		5	ERI2	16	20865107	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	289267	20865107	69489646	3561	60155											
DCUN1D3	123879	broad.mit.edu	37	chr16	20871266	20871267	+	Frame_Shift_Ins	INS	-	C	C													gctgagtgcacctctcccttINSccccttctcttttccttcgc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20871267	C	C	20871266	7	5	54	1	0	1	1	0	0	0	0	0	4348	1783	62	0	61	0	DCUN1D3	16	20871266	Frame_Shift_Ins	INS	-	TCGA-17-Z022-01A-01W-0746-08	6159	20871266	69483487	3562	60156											
DNAH3	55567	broad.mit.edu	37	chr16	21008707	21008707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttgtcaaaccagtaacCatggtcaatccactgcctca	5	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21008707	A	A	21008707	3	1	54	1	0	0	0	0	1	0	0	0	4643	594	21	2	5926	2	DNAH3	16	21008707	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	137441	21008707	69346046	3563	60157											
DNAH3	55567	broad.mit.edu	37	chr16	21133419	21133419	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaaacttcatctcttgGtagggctccttaaaatcatt	6	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21133419	T	T	21133419	4	4	54	1	0	0	0	0	0	1	0	0	4643	1256	44	3	11130	3	DNAH3	16	21133419	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	124712	21133419	69221334	3564	60158											
CRYM	1428	broad.mit.edu	37	chr16	21305550	21305550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcccctctccctccctgGcacaggagtggtcgtggtct	11	16	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21305550	T	T	21305550	1	4	54	0	1	0	0	0	0	0	0	0	3953	1218	42	3		3	CRYM	16	21305550	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	172131	21305550	69049203	3565	60159											
PDZD9	255762	broad.mit.edu	37	chr16	21996011	21996011	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaatagtgaataaaataGattcttcatgtctaaacatt	5	4	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21996011	T	T	21996011	1	4	54	0	1	0	0	0	0	0	0	0	11800	957	33	3		3	PDZD9	16	21996011	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	690461	21996011	68358742	3566	60160											
VWA3A	146177	broad.mit.edu	37	chr16	22134998	22134998	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggctctccctggccagcaGaagaatctggggcacagtct	13	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22134998	A	A	22134998	3	1	54	1	0	0	0	0	1	0	0	0	17367	942	33	4	1564	4	VWA3A	16	22134998	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	138987	22134998	68219755	3567	60161											
VWA3A	146177	broad.mit.edu	37	chr16	22142889	22142889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgaccctcagcatggcCatctctgcctccgcaggtgg	10	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22142889	A	A	22142889	1	1	54	0	1	0	0	0	0	0	0	0	17367	609	21	2		2	VWA3A	16	22142889	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7891	22142889	68211864	3568	60162											
VWA3A	146177	broad.mit.edu	37	chr16	22155822	22155822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggaactgccctcctccCcaaagtgggactcccctcac	8	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22155822	A	A	22155822	1	1	54	0	1	0	0	0	0	0	0	0	17367	638	22	2		2	VWA3A	16	22155822	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	12933	22155822	68198931	3569	60163											
UBFD1	56061	broad.mit.edu	37	chr16	23578552	23578552	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctacttagaacttaatccAtggcctctattcctagttct	4	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23578552	T	T	23578552	1	4	54	0	1	0	0	0	0	0	0	0	17010	232	8	5		5	UBFD1	16	23578552	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1422730	23578552	66776201	3570	60164											
PRKCB	5579	broad.mit.edu	37	chr16	23969383	23969383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcagtggcacaatcttgGctcactgcaacctctgcttc	9	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23969383	T	T	23969383	1	4	54	0	1	0	0	0	0	0	0	0	12614	1218	42	3		3	PRKCB	16	23969383	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	390831	23969383	66385370	3571	60165											
PRKCB	5579	broad.mit.edu	37	chr16	24124200	24124200	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacgtatattttttcaagtAgagctttatataggcctcct	6	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24124200	T	T	24124200	1	4	54	0	1	0	0	0	0	0	0	0	12614	435	15	5		5	PRKCB	16	24124200	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	154817	24124200	66230553	3572	60166											
PRKCB	5579	broad.mit.edu	37	chr16	24212062	24212062	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaaagatacggagccaaaCtcatcccttttattaggatc	9	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24212062	G	G	24212062	1	3	54	0	1	0	0	0	0	0	0	0	12614	580	20	4		4	PRKCB	16	24212062	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87862	24212062	66142691	3573	60167											
CACNG3	10368	broad.mit.edu	37	chr16	24366054	24366054	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagacatgggctctgttctcTtcctgtgctgccttcctctc	8	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24366054	C	C	24366054	1	2	54	0	1	0	0	0	0	0	0	0	2584	1624	56	5		5	CACNG3	16	24366054	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	153992	24366054	65988699	3574	60168											
CACNG3	10368	broad.mit.edu	37	chr16	24372584	24372584	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctctctccccattacctCcacattttctataaatattt	0	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24372584	A	A	24372584	1	1	54	0	1	0	0	0	0	0	0	0	2584	870	30	3		3	CACNG3	16	24372584	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6530	24372584	65982169	3575	60169											
CACNG3	10368	broad.mit.edu	37	chr16	24373040	24373040	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcgatgttcaccctctcCcgggacccctcaaagatcac	6	17	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24373040	A	A	24373040	2	1	54	1	0	0	0	0	0	0	0	1	2584	610	22	2		2	CACNG3	16	24373040	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	456	24373040	65981713	3576	60170											
TNRC6A	27327	broad.mit.edu	37	chr16	24831694	24831694	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taccccaggtaagatgcagtCgtaaggtgggtttctgtggt	14	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24831694	G	G	24831694	1	3	54	0	1	0	0	0	0	0	0	0	16463	899	31	4		4	TNRC6A	16	24831694	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	458654	24831694	65523059	3577	60171											
LCMT1	51451	broad.mit.edu	37	chr16	25143620	25143620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctctgacactgcagaaggGcgcatgctctctgttttgct	10	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25143620	T	T	25143620	1	4	54	0	1	0	0	0	0	0	0	0	8750	1218	42	3		3	LCMT1	16	25143620	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	311926	25143620	65211133	3578	60172											
HS3ST4	9951	broad.mit.edu	37	chr16	25838358	25838358	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagggcactttattatatgGactcaaagatagaaaatgga	10	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25838358	T	T	25838358	1	4	54	0	1	0	0	0	0	0	0	0	7434	1189	41	3		3	HS3ST4	16	25838358	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	694738	25838358	64516395	3579	60173											
HS3ST4	9951	broad.mit.edu	37	chr16	25879681	25879681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatccggatgcaacagcagGcatcacaacctgcttctctc	7	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25879681	T	T	25879681	1	4	54	0	1	0	0	0	0	0	0	0	7434	1218	42	3		3	HS3ST4	16	25879681	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41323	25879681	64475072	3580	60174											
HS3ST4	9951	broad.mit.edu	37	chr16	26139028	26139028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctgagcctcagattaCtcacggatatcatggggaat	9	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26139028	A	A	26139028	1	1	54	0	1	0	0	0	0	0	0	0	7434	580	20	3		3	HS3ST4	16	26139028	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	259347	26139028	64215725	3581	60175											
XPO6	23214	broad.mit.edu	37	chr16	28118815	28118815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccttgttagcaccacccaCcagtggggcctctgggccag	12	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28118815	A	A	28118815	1	1	54	0	1	0	0	0	0	0	0	0	17575	522	18	3		3	XPO6	16	28118815	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1979787	28118815	62235938	3582	60176											
XPO6	23214	broad.mit.edu	37	chr16	28133055	28133055	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgttgtacaattttatctGagatccgtacagagtgactt	8	6	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28133055	A	A	28133055	4	1	54	1	0	0	0	0	0	1	0	0	17575	1299	45	4	1626	4	XPO6	16	28133055	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14240	28133055	62221698	3583	60177											
APOB48R	55911	broad.mit.edu	37	chr16	28508760	28508760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaggaagaggcagcaGcaggagagcatgcaggtggg	18	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28508760	T	T	28508760	3	4	54	1	0	0	0	0	1	0	0	0	788	971	34	3	2381	3	APOB48R	16	28508760	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	375705	28508760	61845993	3584	60178											
CD19	930	broad.mit.edu	37	chr16	28943441	28943441	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggcagaaagggaagggattGaggctggaaacttgagttgt	18	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28943441	C	C	28943441	1	2	54	0	1	0	0	0	0	0	0	0	3003	1305	45	4		4	CD19	16	28943441	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	434681	28943441	61411312	3585	60179											
QPRT	23475	broad.mit.edu	37	chr16	29706293	29706293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgggtggccctcaacacgCtggcccgctgcagtggcatt	13	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29706293	A	A	29706293	3	1	54	1	0	0	0	0	1	0	0	0	12984	796	28	3	328	3	QPRT	16	29706293	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	762852	29706293	60648460	3586	60180											
INO80E	283899	broad.mit.edu	37	chr16	30016795	30016795	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccatgcccaccacggcccCgcccggcgccctccccgtgc	10	25	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30016795	T	T	30016795	1	4	54	0	1	0	0	0	0	0	0	0	7820	667	23	4		4	INO80E	16	30016795	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	310502	30016795	60337958	3587	60181											
C16orf92	146378	broad.mit.edu	37	chr16	30035398	30035398	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttctccttttccagttctGcacccacatgtaaggcctgc	6	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30035398	A	A	30035398	3	1	54	1	0	0	0	0	1	0	0	0	1859	1319	46	4	392	4	C16orf92	16	30035398	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	18603	30035398	60319355	3588	60182											
MAPK3	5595	broad.mit.edu	37	chr16	30129042	30129042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgccagggaagatgggccGgttagagagcatctcagcca	14	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30129042	T	T	30129042	2	4	54	1	0	0	0	0	0	0	0	1	9371	1115	39	1		1	MAPK3	16	30129042	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	93644	30129042	60225711	3589	60183											
CORO1A	11151	broad.mit.edu	37	chr16	30199618	30199618	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaggctgggcactgacttTgcggtcttgtggggggtgtc	17	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30199618	C	C	30199618	1	2	54	0	1	0	0	0	0	0	0	0	3785	1827	63	5		5	CORO1A	16	30199618	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	70576	30199618	60155135	3590	60184											
PRSS53	339105	broad.mit.edu	37	chr16	31096568	31096568	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctggggacctgctgtcctCaaggatccacaggctgaaac	12	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31096568	G	G	31096568	3	3	54	1	0	0	0	0	1	0	0	0	12738	825	29	4	784	4	PRSS53	16	31096568	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	896950	31096568	59258185	3591	60185											
ITGAX	3687	broad.mit.edu	37	chr16	31374272	31374272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatcggctcctacttcgGggcctccctctgctccgtgg	11	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31374272	T	T	31374272	3	4	54	1	0	0	0	0	1	0	0	0	7959	1232	43	2	1426	2	ITGAX	16	31374272	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	277704	31374272	58980481	3592	60186											
ITGAX	3687	broad.mit.edu	37	chr16	31384824	31384824	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgccatctggggcacgcctCtgctcgtgtgggtgttcaac	14	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31384824	A	A	31384824	1	1	54	0	1	0	0	0	0	0	0	0	7959	928	32	3		3	ITGAX	16	31384824	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10552	31384824	58969929	3593	60187											
ITGAD	3681	broad.mit.edu	37	chr16	31419751	31419751	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtttccccacaggaaccCagtccagggcaagcagctcc	9	17	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31419751	T	T	31419751	4	4	54	1	0	0	0	0	0	1	0	0	7954	595	21	4	1053	4	ITGAD	16	31419751	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	34927	31419751	58935002	3594	60188											
ZNF423	23090	broad.mit.edu	37	chr16	49559130	49559130	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggcaaagggcctgttaatCcctcagggtatccccaacgg	13	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49559130	A	A	49559130	1	1	54	0	1	0	0	0	0	0	0	0	18025	870	30	3		3	ZNF423	16	49559130	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18139379	49559130	40795623	3595	60189											
SALL1	6299	broad.mit.edu	37	chr16	51175296	51175296	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagcgtggacaaggggttGgcagatgttcgtaaagtacc	14	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51175296	T	T	51175296	2	4	54	1	0	0	0	0	0	0	0	1	13921	1335	47	2		2	SALL1	16	51175296	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1616166	51175296	39179457	3596	60190											
RBL2	5934	broad.mit.edu	37	chr16	53524047	53524047	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttcccaccatagagactGagagaaattaatagtatgat	7	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53524047	C	C	53524047	2	2	54	1	0	0	0	0	0	0	0	1	13218	1277	45	4		4	RBL2	16	53524047	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2348751	53524047	36830706	3597	60191											
SLC6A2	6530	broad.mit.edu	37	chr16	55735968	55735968	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaacccagtgtgagctgcCttttccccttggaaacatcg	9	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55735968	T	T	55735968	1	4	54	0	1	0	0	0	0	0	0	0	14797	696	24	4		4	SLC6A2	16	55735968	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2211921	55735968	34618785	3598	60192											
NLRC5	84166	broad.mit.edu	37	chr16	57113416	57113416	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctgctagatcccctgactCaaacaacccccatcccatcc	3	20	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57113416	G	G	57113416	1	3	54	0	1	0	0	0	0	0	0	0	10565	841	29	4		4	NLRC5	16	57113416	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1377448	57113416	33241337	3599	60193											
TEPP	374739	broad.mit.edu	37	chr16	58010265	58010265	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctgggagaccacagccttCaggaaggctggaagggagtg	17	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58010265	T	T	58010265	1	4	54	0	1	0	0	0	0	0	0	0	15882	841	29	4		4	TEPP	16	58010265	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	896849	58010265	32344488	3600	60194											
CDH8	1006	broad.mit.edu	37	chr16	62055059	62055059	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaacaaagcttacccgGccaacaagaatcggttcagg	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62055059	T	T	62055059	2	4	54	1	0	0	0	0	0	0	0	1	3146	1190	42	3		3	CDH8	16	62055059	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4044794	62055059	28299694	3601	60195											
CDH11	1009	broad.mit.edu	37	chr16	65068860	65068860	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcaagtccccctcgacccTcgagttatcaagaggaggct	9	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65068860	A	A	65068860	1	1	54	0	1	0	0	0	0	0	0	0	3127	1566	54	5		5	CDH11	16	65068860	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3013801	65068860	25285893	3602	60196											
CBFB	865	broad.mit.edu	37	chr16	67070584	67070584	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atctgtctctccagttttttCcggccagctggcagggagaa	11	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67070584	T	T	67070584	3	4	54	1	0	0	0	0	1	0	0	0	2725	855	30	4	218	4	CBFB	16	67070584	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2001724	67070584	23284169	3603	60197											
CTCF	10664	broad.mit.edu	37	chr16	67663240	67663240	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattttattaaagtaaataActtccaatctgatcttagct	5	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67663240	T	T	67663240	1	4	54	0	1	0	0	0	0	0	0	0	4034	58	2	5		5	CTCF	16	67663240	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	592656	67663240	22691513	3604	60198											
GFOD2	81577	broad.mit.edu	37	chr16	67709752	67709752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggggctcagcaggctgCctgagtagatgcgggcatca	16	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67709752	A	A	67709752	3	1	54	1	0	0	0	0	1	0	0	0	6408	739	26	3	697	3	GFOD2	16	67709752	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	46512	67709752	22645001	3605	60199											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67854914	67854914	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccaggctttgggccaggaGacagggcaggggcgtgtgtt	20	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67854914	C	C	67854914	1	2	54	0	1	0	0	0	0	0	0	0	16757	957	33	4		4	TSNAXIP1	16	67854914	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	145162	67854914	22499839	3606	60200											
TMED6	146456	broad.mit.edu	37	chr16	69385776	69385776	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattacggcccatttcagggCcacacatagatattcatcat	6	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69385776	G	G	69385776	1	3	54	0	1	0	0	0	0	0	0	0	16131	754	26	4		4	TMED6	16	69385776	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1530862	69385776	20968977	3607	60201											
HYDIN	54768	broad.mit.edu	37	chr16	70905949	70905949	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttatttacctgtggggaGaaagcaattgtagctgaaac	10	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70905949	T	T	70905949	3	4	54	1	0	0	0	0	1	0	0	0	7537	933	33	3	4371	3	HYDIN	16	70905949	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1520173	70905949	19448804	3608	60202											
HYDIN	54768	broad.mit.edu	37	chr16	70943854	70943854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacctgcctcagcctccCaaagtgctgggattacaggc	9	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70943854	A	A	70943854	1	1	54	0	1	0	0	0	0	0	0	0	7537	609	21	2		2	HYDIN	16	70943854	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37905	70943854	19410899	3609	60203											
KIAA0174	9798	broad.mit.edu	37	chr16	71950431	71950431	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggaaagatgaacgagCtcggatccgtgtggagcaca	15	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71950431	G	G	71950431	3	3	54	1	0	0	0	0	1	0	0	0	8228	797	28	4	161	4	KIAA0174	16	71950431	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1006577	71950431	18404322	3610	60204											
KIAA0174	9798	broad.mit.edu	37	chr16	71961473	71961473	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgccaaaggggatctgagtCatttctctggtatttgtaac	10	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71961473	T	T	71961473	1	4	54	0	1	0	0	0	0	0	0	0	8228	841	29	4		4	KIAA0174	16	71961473	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11042	71961473	18393280	3611	60205											
WDR59	79726	broad.mit.edu	37	chr16	74946198	74946198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagggaacttcaccagCatcttgacacgatggttgct	11	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74946198	A	A	74946198	3	1	54	1	0	0	0	0	1	0	0	0	17435	710	25	3	1689	3	WDR59	16	74946198	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2984725	74946198	15408555	3612	60206											
CNTNAP4	85445	broad.mit.edu	37	chr16	76482755	76482755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcattcagtgctcatccaGcgtttgggcaaacaagtcaa	10	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76482755	T	T	76482755	3	4	54	1	0	0	0	0	1	0	0	0	3681	962	34	3	869	3	CNTNAP4	16	76482755	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1536557	76482755	13871998	3613	60207											
CNTNAP4	85445	broad.mit.edu	37	chr16	76550692	76550692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattctgggccagaagtggtGgctcacgcctgtaatcccag	12	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76550692	T	T	76550692	1	4	54	0	1	0	0	0	0	0	0	0	3681	1363	47	2		2	CNTNAP4	16	76550692	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	67937	76550692	13804061	3614	60208											
CNTNAP4	85445	broad.mit.edu	37	chr16	76592332	76592332	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttattaagcaatgaagtcaGcacagtttctatttggacag	8	7	2	1	rs147753872	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76592332	C	C	76592332	1	2	54	0	1	0	0	0	0	0	0	0	3681	986	34	4		4	CNTNAP4	16	76592332	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41640	76592332	13762421	3615	60209											
ADAMTS18	170692	broad.mit.edu	37	chr16	77396100	77396100	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattctttccaatgagggcaGactgccattgacaaaaacta	7	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77396100	C	C	77396100	3	2	54	1	0	0	0	0	1	0	0	0	263	942	33	4	2615	4	ADAMTS18	16	77396100	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	803768	77396100	12958653	3616	60210											
ADAMTS18	170692	broad.mit.edu	37	chr16	77465545	77465545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgtcagcacccagagCccacaattccaaatggtctc	7	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77465545	A	A	77465545	1	1	54	0	1	0	0	0	0	0	0	0	263	754	26	3		3	ADAMTS18	16	77465545	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	69445	77465545	12889208	3617	60211											
NUDT7	283927	broad.mit.edu	37	chr16	77769779	77769779	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggtaagcgtgaccctacaGacatggatgatgcagccaca	12	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77769779	A	A	77769779	3	1	54	1	0	0	0	0	1	0	0	0	10839	942	33	4	254	4	NUDT7	16	77769779	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	304234	77769779	12584974	3618	60212											
VAT1L	57687	broad.mit.edu	37	chr16	77921644	77921644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatatgcaggcaggtctgGgactttaccttgaacatact	9	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77921644	T	T	77921644	1	4	54	0	1	0	0	0	0	0	0	0	17257	1247	43	2		2	VAT1L	16	77921644	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	151865	77921644	12433109	3619	60213											
WWOX	51741	broad.mit.edu	37	chr16	78434610	78434610	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaagcagggatcattctgGagtgtacactgggcatttga	14	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78434610	T	T	78434610	1	4	54	0	1	0	0	0	0	0	0	0	17541	1189	41	3		3	WWOX	16	78434610	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	512966	78434610	11920143	3620	60214											
WWOX	51741	broad.mit.edu	37	chr16	79027503	79027503	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggggacaggaccttgcgCtgtgcggcttggcatgctgc	17	10	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79027503	T	T	79027503	1	4	54	0	1	0	0	0	0	0	0	0	17541	812	28	4		4	WWOX	16	79027503	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	592893	79027503	11327250	3621	60215											
CMIP	80790	broad.mit.edu	37	chr16	81618623	81618623	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacttctttttcattgaggtGaaattcacataatgtaaaaa	5	5	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81618623	C	C	81618623	1	2	54	0	1	0	0	0	0	0	0	0	3610	1305	45	4		4	CMIP	16	81618623	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2591120	81618623	8736130	3622	60216											
CDH13	1012	broad.mit.edu	37	chr16	82768467	82768467	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttgagaagctgagagccGagggctgcctgctgaccgca	15	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82768467	A	A	82768467	1	1	54	0	1	0	0	0	0	0	0	0	3129	1073	37	4		4	CDH13	16	82768467	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1149844	82768467	7586286	3623	60217											
CDH13	1012	broad.mit.edu	37	chr16	82815222	82815222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctattaatctatccatcTacccatccattcagctattc	1	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82815222	A	A	82815222	1	1	54	0	1	0	0	0	0	0	0	0	3129	1537	53	5		5	CDH13	16	82815222	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	46755	82815222	7539531	3624	60218											
CDH13	1012	broad.mit.edu	37	chr16	83066999	83066999	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agataagctgcccaacctacTcatggtccttctgttgtttt	7	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83066999	A	A	83066999	1	1	54	0	1	0	0	0	0	0	0	0	3129	1566	54	5		5	CDH13	16	83066999	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	251777	83066999	7287754	3625	60219											
CDH13	1012	broad.mit.edu	37	chr16	83233682	83233683	+	Intron	DNP	GA	TT	TT													cagcgcctcattccttacctGattcacacggtgctgatacg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	83233683	TT	TT	83233682	1	4	54	0	1	0	0	0	0	0	0	0	3129	1305	45	3		3	CDH13	16	83233682	Intron	DNP	GA	TCGA-17-Z022-01A-01W-0746-08	166683	83233682	7121071	3626	60220											
CDH13	1012	broad.mit.edu	37	chr16	83373598	83373598	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtccaaaaatcacaccaAggctaaggcaatacagggcc	11	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83373598	C	C	83373598	1	2	54	0	1	0	0	0	0	0	0	0	3129	87	3	5		5	CDH13	16	83373598	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	139916	83373598	6981155	3627	60221											
CDH13	1012	broad.mit.edu	37	chr16	83600481	83600481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagaaaagctcagcaaccAagaggaaaaaaaagaagaaa	8	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83600481	T	T	83600481	1	4	54	0	1	0	0	0	0	0	0	0	3129	145	5	5		5	CDH13	16	83600481	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	226883	83600481	6754272	3628	60222											
CDH13	1012	broad.mit.edu	37	chr16	83601821	83601821	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagctgatctgatgtaAaatctgtctgcatttcagag	8	6	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83601821	T	T	83601821	1	4	54	0	1	0	0	0	0	0	0	0	3129	29	1	5		5	CDH13	16	83601821	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1340	83601821	6752932	3629	60223											
CDH13	1012	broad.mit.edu	37	chr16	83798363	83798363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccctgaggcccttgccaCggctgctcagcctcctgaag	10	17	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83798363	T	T	83798363	1	4	54	0	1	0	0	0	0	0	0	0	3129	551	19	4		4	CDH13	16	83798363	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	196542	83798363	6556390	3630	60224											
MBTPS1	8720	broad.mit.edu	37	chr16	84089846	84089846	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagagcaagtgatctacgGggagatgtgaaatgccattt	13	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84089846	A	A	84089846	1	1	54	0	1	0	0	0	0	0	0	0	9454	1247	43	4		4	MBTPS1	16	84089846	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	291483	84089846	6264907	3631	60225											
SPG7	6687	broad.mit.edu	37	chr16	89611126	89611126	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacattttggacggtgctctGatgaggccaggccgactgga	15	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89611126	A	A	89611126	2	1	54	1	0	0	0	0	0	0	0	1	15162	1277	45	4		4	SPG7	16	89611126	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5521280	89611126	743627	3632	60226											
TUBB3	10381	broad.mit.edu	37	chr16	90001393	90001393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccaaggtgtcagacacGgtggtggagccctacaacgc	12	13	2	1	rs143029958	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90001393	T	T	90001393	2	4	54	1	0	0	0	0	0	0	0	1	16883	1103	39	1		1	TUBB3	16	90001393	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	390267	90001393	353360	3633	60227											
RNMTL1	55178	broad.mit.edu	37	chr17	685883	685883	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgctcccagcacctgggaaGagtctgggcttcgctacgat	13	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	685883	C	C	685883	3	2	54	1	0	0	0	0	1	0	0	0	13618	943	33	4	267	4	RNMTL1	17	685883	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08		685883	80509327	3634	60228											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2868963	2868963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgttgcgctgcttgaggcCacttctcttccaggcagggc	13	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2868963	T	T	2868963	1	4	54	0	1	0	0	0	0	0	0	0	13146	609	21	4		4	RAP1GAP2	17	2868963	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2183080	2868963	78326247	3635	60229											
TRPV3	162514	broad.mit.edu	37	chr17	3458210	3458210	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggagcttcagggagtttaGgggccccatgtggctgcatc	17	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3458210	A	A	3458210	1	1	54	0	1	0	0	0	0	0	0	0	16722	1015	35	4		4	TRPV3	17	3458210	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	589247	3458210	77737000	3636	60230											
TAX1BP3	30851	broad.mit.edu	37	chr17	3568203	3568203	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgggtcccaggccccTgcaggaatccagctgctcac	14	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3568203	A	A	3568203	1	1	54	0	1	0	0	0	0	0	0	0	15714	1595	55	5		5	TAX1BP3	17	3568203	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	109993	3568203	77627007	3637	60231											
ZZEF1	23140	broad.mit.edu	37	chr17	3974200	3974200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaaatggcggcaggggtCgtcaggaatgttcttaacct	13	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3974200	A	A	3974200	3	1	54	1	0	0	0	0	1	0	0	0	18384	884	31	3	5152	3	ZZEF1	17	3974200	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	405997	3974200	77221010	3638	60232											
MYBBP1A	10514	broad.mit.edu	37	chr17	4442371	4442371	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaaaagcctgggggcaAagaggtggcaggcacgagag	17	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4442371	G	G	4442371	1	3	54	0	1	0	0	0	0	0	0	0	10102	29	1	5		5	MYBBP1A	17	4442371	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	468171	4442371	76752839	3639	60233											
WSCD1	23302	broad.mit.edu	37	chr17	6021636	6021636	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtatacacaggtaggcactCaaaccccatcctgctaggga	9	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6021636	T	T	6021636	1	4	54	0	1	0	0	0	0	0	0	0	17533	841	29	4		4	WSCD1	17	6021636	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1579265	6021636	75173574	3640	60234											
CLDN7	1366	broad.mit.edu	37	chr17	7165758	7165758	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggtccgaggctgcggtgcGcagcagaggtggctcggagg	20	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7165758	A	A	7165758	1	1	54	0	1	0	0	0	0	0	0	0	3522	1102	38	4		4	CLDN7	17	7165758	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1144122	7165758	74029452	3641	60235											
NEURL4	84461	broad.mit.edu	37	chr17	7220677	7220677	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaggacggcagctcaggAtggaggcagtacctgggagg	17	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7220677	G	G	7220677	3	3	54	1	0	0	0	0	1	0	0	0	10442	333	12	5	365	5	NEURL4	17	7220677	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	54919	7220677	73974533	3642	60236											
SHBG	6462	broad.mit.edu	37	chr17	7530221	7530221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacagtggggtctgtgggGtgctttgctcccaccccagc	13	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7530221	T	T	7530221	1	4	54	0	1	0	0	0	0	0	0	0	14382	1276	44	3		3	SHBG	17	7530221	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	309544	7530221	73664989	3643	60237											
TP53	7157	broad.mit.edu	37	chr17	7577506	7577506	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggctcctgacctggagtCttccagtgtgatgatggtga	14	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577506	A	A	7577506	3	1	54	1	0	0	0	0	1	0	0	0	16505	913	32	3	515	3	TP53	17	7577506	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	47285	7577506	73617704	3644	60238											
TP53	7157	broad.mit.edu	37	chr17	7577800	7577800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctccttcctcagcctcCcgagtagctgggactacagg	9	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577800	A	A	7577800	1	1	54	0	1	0	0	0	0	0	0	0	16505	638	22	2		2	TP53	17	7577800	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	294	7577800	73617410	3645	60239											
WRAP53	55135	broad.mit.edu	37	chr17	7606002	7606002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgcctggagaccccgaGggaggcagggacatccaggg	19	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7606002	T	T	7606002	1	4	54	0	1	0	0	0	0	0	0	0	17527	1015	35	2		2	WRAP53	17	7606002	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	28202	7606002	73589208	3646	60240											
CHD3	1107	broad.mit.edu	37	chr17	7797395	7797395	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctggggagggcgtagaatGaagtctgcctcactgacggc	16	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7797395	A	A	7797395	1	1	54	0	1	0	0	0	0	0	0	0	3357	1305	45	4		4	CHD3	17	7797395	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	191393	7797395	73397815	3647	60241											
PER1	5187	broad.mit.edu	37	chr17	8051807	8051808	+	Intron	DNP	CT	AG	AG													cttgggcaccttattcaactCtacctctaagaggagctcaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	8051808	AG	AG	8051807	1	1	54	0	1	0	0	0	0	0	0	0	11823	928	32	3		3	PER1	17	8051807	Intron	DNP	CT	TCGA-17-Z022-01A-01W-0746-08	254412	8051807	73143403	3648	60242											
PIK3R6	146850	broad.mit.edu	37	chr17	8714343	8714343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagaggttttctatgagGgccttgcccctgcagcaaac	11	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8714343	T	T	8714343	1	4	54	0	1	0	0	0	0	0	0	0	12018	1247	43	2		2	PIK3R6	17	8714343	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	662536	8714343	72480867	3649	60243											
STX8	9482	broad.mit.edu	37	chr17	9395240	9395240	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggcctgcgtcctgttcTgaaagaaaaaagaaaaataa	8	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9395240	A	A	9395240	5	1	54	1	0	0	0	0	0	0	1	0	15469	1594	55	5	275	5	STX8	17	9395240	Splice_Site	SNP	T	TCGA-17-Z022-01A-01W-0746-08	680897	9395240	71799970	3650	60244											
MYH1	4619	broad.mit.edu	37	chr17	10406170	10406170	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctggagagccttcttcTccttggtcagcttagcaatg	9	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10406170	C	C	10406170	3	2	54	1	0	0	0	0	1	0	0	0	10123	1551	54	5	2891	5	MYH1	17	10406170	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1010930	10406170	70789040	3651	60245											
MYH2	4620	broad.mit.edu	37	chr17	10432343	10432343	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgctgcttctctgctttGgcccgggaggcccgctctgc	14	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10432343	T	T	10432343	2	4	54	1	0	0	0	0	0	0	0	1	10129	1335	47	2		2	MYH2	17	10432343	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	26173	10432343	70762867	3652	60246											
DNAH9	1770	broad.mit.edu	37	chr17	11550479	11550479	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacttctaaaacgtgacccAgagacgaaggagatcactat	8	11	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11550479	G	G	11550479	2	3	54	1	0	0	0	0	0	0	0	1	4648	175	7	5		5	DNAH9	17	11550479	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1118136	11550479	69644731	3653	60247											
DNAH9	1770	broad.mit.edu	37	chr17	11554648	11554648	+	Intron	DEL	G	-	-													ctggaaaacagaaggtaacaGggcaccatctgaagtctgac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11554648	-	-	11554648	6	5	54	0	1	1	0	1	0	0	0	0	4648	1015	35	0		0	DNAH9	17	11554648	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	4169	11554648	69640562	3654	60248											
DNAH9	1770	broad.mit.edu	37	chr17	11640186	11640186	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctcgtgccttagtcttcGcccaaaggtagcagagcaac	11	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11640186	A	A	11640186	1	1	54	0	1	0	0	0	0	0	0	0	4648	1102	38	4		4	DNAH9	17	11640186	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	85538	11640186	69555024	3655	60249											
DNAH9	1770	broad.mit.edu	37	chr17	11644867	11644867	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaggcttagaggagacacAcatttggagaatgaagaata	11	5	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11644867	T	T	11644867	1	4	54	0	1	0	0	0	0	0	0	0	4648	174	6	5		5	DNAH9	17	11644867	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	4681	11644867	69550343	3656	60250											
DNAH9	1770	broad.mit.edu	37	chr17	11672373	11672373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctgaaatgcttcggaaCgccgctggtgcatctgtttc	11	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11672373	A	A	11672373	1	1	54	0	1	0	0	0	0	0	0	0	4648	551	19	3		3	DNAH9	17	11672373	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	27506	11672373	69522837	3657	60251											
DNAH9	1770	broad.mit.edu	37	chr17	11687489	11687489	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctaaatttgggcatagtGtgagagatgggaccaaaata	11	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11687489	A	A	11687489	1	1	54	0	1	0	0	0	0	0	0	0	4648	1392	48	4		4	DNAH9	17	11687489	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15116	11687489	69507721	3658	60252											
DNAH9	1770	broad.mit.edu	37	chr17	11819806	11819806	+	Intron	SNP	T	A	A													ggacatatattctggtgacaTccacatttcccacatcttga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11819806	A	A	11819806	1	1	54	0	1	0	0	0	0	0	0	0	4648	1450	50	5		5	DNAH9	17	11819806	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	132317	11819806	69375404	3659	60253	283	2									
DNAH9	1770	broad.mit.edu	37	chr17	11819808	11819808	+	Intron	SNP	C	A	A													acatatattctggtgacatcCacatttcccacatcttgaat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11819808	A	A	11819808	1	1	54	0	1	0	0	0	0	0	0	0	4648	609	21	2		2	DNAH9	17	11819808	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2	11819808	69375402	3660	60254	283	2									
RICH2	9912	broad.mit.edu	37	chr17	12757516	12757516	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtgcaggaagaaaactgCagtttcaaacagcttctgta	11	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12757516	G	G	12757516	1	3	54	0	1	0	0	0	0	0	0	0	13466	725	25	4		4	RICH2	17	12757516	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	937708	12757516	68437694	3661	60255											
NCOR1	9611	broad.mit.edu	37	chr17	16029572	16029572	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaggcaaacagaaatagctCcttatagtgtgataaattat	7	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16029572	A	A	16029572	1	1	54	0	1	0	0	0	0	0	0	0	10330	870	30	3		3	NCOR1	17	16029572	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3272056	16029572	65165638	3662	60256											
FBXW10	10517	broad.mit.edu	37	chr17	18668095	18668095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttgcacacgaatcttcGgtggtcaccaggggactatc	13	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18668095	T	T	18668095	3	4	54	1	0	0	0	0	1	0	0	0	5820	1116	39	1	1504	1	FBXW10	17	18668095	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2638523	18668095	62527115	3663	60257											
ULK2	9706	broad.mit.edu	37	chr17	19700851	19700851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagtagctgtacccagccCcagtatgggatgggcacacg	14	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19700851	A	A	19700851	3	1	54	1	0	0	0	0	1	0	0	0	17102	623	22	2	1483	2	ULK2	17	19700851	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1032756	19700851	61494359	3664	60258											
AKAP10	11216	broad.mit.edu	37	chr17	19813326	19813326	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaattgaatgtacatttcAtgcataattttacattaaaa	3	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19813326	T	T	19813326	1	4	54	0	1	0	0	0	0	0	0	0	446	232	8	5		5	AKAP10	17	19813326	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	112475	19813326	61381884	3665	60259											
NOS2	4843	broad.mit.edu	37	chr17	26098072	26098072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccaagtggacatcagccCtcggctcccagtagggccct	10	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26098072	A	A	26098072	1	1	54	0	1	0	0	0	0	0	0	0	10638	696	24	2		2	NOS2	17	26098072	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6284746	26098072	55097138	3666	60260											
NOS2	4843	broad.mit.edu	37	chr17	26115622	26115622	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaatcatttatttgaccttCtggattatccattatttact	4	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26115622	G	G	26115622	1	3	54	0	1	0	0	0	0	0	0	0	10638	928	32	4		4	NOS2	17	26115622	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17550	26115622	55079588	3667	60261											
NOS2	4843	broad.mit.edu	37	chr17	26143922	26143922	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggtgcctgccatcacaCcggctaatttttgtattttt	7	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26143922	A	A	26143922	1	1	54	0	1	0	0	0	0	0	0	0	10638	522	18	3		3	NOS2	17	26143922	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	28300	26143922	55051288	3668	60262											
SDF2	6388	broad.mit.edu	37	chr17	26988675	26988675	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaccacactgtcagatattCtataggccccgcccctccag	7	16	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26988675	G	G	26988675	1	3	54	0	1	0	0	0	0	0	0	0	14073	928	32	4		4	SDF2	17	26988675	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	844753	26988675	54206535	3669	60263											
SSH2	85464	broad.mit.edu	37	chr17	28004685	28004685	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaataaaaaaggaaatcTcttacccatcaccatccaaa	3	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28004685	C	C	28004685	1	2	54	0	1	0	0	0	0	0	0	0	15303	1566	54	5		5	SSH2	17	28004685	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1016010	28004685	53190525	3670	60264											
SLC6A4	6532	broad.mit.edu	37	chr17	28537564	28537564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccagggatccaaagaagCaggtgatgaccacggcgagc	14	10	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28537564	A	A	28537564	3	1	54	1	0	0	0	0	1	0	0	0	14800	710	25	3	494	3	SLC6A4	17	28537564	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	532879	28537564	52657646	3671	60265											
UTP6	55813	broad.mit.edu	37	chr17	30190500	30190500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggtctaccaagggggtGgttcaattcttctttcatat	9	9	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30190500	A	A	30190500	3	1	54	1	0	0	0	0	1	0	0	0	17229	1348	47	4	125	4	UTP6	17	30190500	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1652936	30190500	51004710	3672	60266											
RHOT1	55288	broad.mit.edu	37	chr17	30538198	30538198	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttgcatctgtcagaacttCctcaactcagacttgctgca	6	12	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30538198	G	G	30538198	1	3	54	0	1	0	0	0	0	0	0	0	13452	854	30	4		4	RHOT1	17	30538198	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	347698	30538198	50657012	3673	60267											
RHBDL3	162494	broad.mit.edu	37	chr17	30632417	30632417	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcgtgggctcttctggagGggtgtatgctctcgtctctg	15	9	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30632417	C	C	30632417	3	2	54	1	0	0	0	0	1	0	0	0	13432	1232	43	4	865	4	RHBDL3	17	30632417	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	94219	30632417	50562793	3674	60268											
PSMD11	5717	broad.mit.edu	37	chr17	30807572	30807572	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccagtagataaaacttacGaagctgctctggaaacaatt	7	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30807572	T	T	30807572	4	4	54	1	0	0	0	0	0	1	0	0	12800	1059	37	3	1242	3	PSMD11	17	30807572	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	175155	30807572	50387638	3675	60269											
ACCN1	40	broad.mit.edu	37	chr17	31366290	31366290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcacatggaccaaattcCattaggcttgggggtatccc	10	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31366290	A	A	31366290	1	1	54	0	1	0	0	0	0	0	0	0	128	609	21	2		2	ACCN1	17	31366290	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	558718	31366290	49828920	3676	60270											
ACCN1	40	broad.mit.edu	37	chr17	31438145	31438145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttctgtctgaccttcCtgagcccctcttatgaagac	6	14	4	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31438145	A	A	31438145	1	1	54	0	1	0	0	0	0	0	0	0	128	696	24	2		2	ACCN1	17	31438145	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	71855	31438145	49757065	3677	60271											
ACCN1	40	broad.mit.edu	37	chr17	31460296	31460296	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagcgttggcagaggcgcaGaggcagggcttgagtgaatg	18	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31460296	T	T	31460296	1	4	54	0	1	0	0	0	0	0	0	0	128	957	33	3		3	ACCN1	17	31460296	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22151	31460296	49734914	3678	60272											
ACCN1	40	broad.mit.edu	37	chr17	31593913	31593913	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcacagaacagcagagtgAggtggggtgcttgacaaggg	17	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31593913	T	T	31593913	1	4	54	0	1	0	0	0	0	0	0	0	128	319	11	5		5	ACCN1	17	31593913	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	133617	31593913	49601297	3679	60273											
ACCN1	40	broad.mit.edu	37	chr17	31779112	31779112	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacttggaataccaagttAgagctgcatgtaaattaaaa	7	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31779112	T	T	31779112	1	4	54	0	1	0	0	0	0	0	0	0	128	435	15	5		5	ACCN1	17	31779112	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	185199	31779112	49416098	3680	60274											
ACCN1	40	broad.mit.edu	37	chr17	31831499	31831499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatttagctgggattacgGgtgcgccaccaccacaccca	9	16	0	0	rs138797967	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31831499	T	T	31831499	1	4	54	0	1	0	0	0	0	0	0	0	128	1247	43	2		2	ACCN1	17	31831499	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	52387	31831499	49363711	3681	60275											
ACCN1	40	broad.mit.edu	37	chr17	32088567	32088567	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcccaaatggaatggagtGatcaactctcagggagggac	13	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32088567	C	C	32088567	1	2	54	0	1	0	0	0	0	0	0	0	128	1305	45	4		4	ACCN1	17	32088567	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	257068	32088567	49106643	3682	60276											
ACCN1	40	broad.mit.edu	37	chr17	32275200	32275200	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgggaggaagaacagaGgtggctgataatctataagc	15	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32275200	T	T	32275200	1	4	54	0	1	0	0	0	0	0	0	0	128	1015	35	2		2	ACCN1	17	32275200	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	186633	32275200	48920010	3683	60277											
CCL1	6346	broad.mit.edu	37	chr17	32688818	32688818	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttacattaagccctcattGgagcagatggagctggtatt	10	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32688818	A	A	32688818	2	1	54	1	0	0	0	0	0	0	0	1	2910	1335	47	4		4	CCL1	17	32688818	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	413618	32688818	48506392	3684	60278											
TMEM132E	124842	broad.mit.edu	37	chr17	32936981	32936981	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatccaaacctgcctttaatCcctggaccccacttgccact	4	17	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32936981	T	T	32936981	1	4	54	0	1	0	0	0	0	0	0	0	16171	870	30	4		4	TMEM132E	17	32936981	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	248163	32936981	48258229	3685	60279											
TMEM132E	124842	broad.mit.edu	37	chr17	32963124	32963124	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggcccaggtggtggcCagcctggccctctccctgcg	13	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32963124	A	A	32963124	2	1	54	1	0	0	0	0	0	0	0	1	16171	581	21	2		2	TMEM132E	17	32963124	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	26143	32963124	48232086	3686	60280											
SLFN5	162394	broad.mit.edu	37	chr17	33592869	33592869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgtttggcttctaggGcaaaaagacatctgtatatt	9	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33592869	T	T	33592869	3	4	54	1	0	0	0	0	1	0	0	0	14851	1203	42	3	2652	3	SLFN5	17	33592869	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	629745	33592869	47602341	3687	60281											
SLFN12L	342615	broad.mit.edu	37	chr17	33831686	33831686	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaagctccctctgctatatCccaaagtccagcaccctgtg	6	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33831686	A	A	33831686	1	1	54	0	1	0	0	0	0	0	0	0	14849	870	30	3		3	SLFN12L	17	33831686	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	238817	33831686	47363524	3688	60282											
C17orf66	256957	broad.mit.edu	37	chr17	34191867	34191867	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagatggaacattttgatGtgggtttgatgtacctcttt	13	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34191867	A	A	34191867	2	1	54	1	0	0	0	0	0	0	0	1	1890	1368	48	4		4	C17orf66	17	34191867	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	360181	34191867	47003343	3689	60283											
CCL3	6348	broad.mit.edu	37	chr17	34417244	34417244	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaagaagttctcttttctCttgggggcttttaggccaca	9	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34417244	A	A	34417244	1	1	54	0	1	0	0	0	0	0	0	0	2929	928	32	3		3	CCL3	17	34417244	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	225377	34417244	46777966	3690	60284											
GGNBP2	79893	broad.mit.edu	37	chr17	34923460	34923460	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttttttaaggttttacccTtctgtattctcccttttcac	4	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34923460	C	C	34923460	1	2	54	0	1	0	0	0	0	0	0	0	6423	1624	56	5		5	GGNBP2	17	34923460	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	506216	34923460	46271750	3691	60285											
ACACA	31	broad.mit.edu	37	chr17	35506665	35506665	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaaagatggagggagagggGaagagatagactgaggaagg	20	1	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35506665	A	A	35506665	1	1	54	0	1	0	0	0	0	0	0	0	106	1189	41	4		4	ACACA	17	35506665	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	583205	35506665	45688545	3692	60286											
ACACA	31	broad.mit.edu	37	chr17	35518989	35518989	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaggcataaacaaacaaatGaacagaagtttcttacaggc	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35518989	C	C	35518989	1	2	54	0	1	0	0	0	0	0	0	0	106	1305	45	4		4	ACACA	17	35518989	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12324	35518989	45676221	3693	60287											
ACACA	31	broad.mit.edu	37	chr17	35520718	35520718	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaaatctctgctctctgttCagcagcatctggccagctac	8	13	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35520718	T	T	35520718	1	4	54	0	1	0	0	0	0	0	0	0	106	841	29	4		4	ACACA	17	35520718	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1729	35520718	45674492	3694	60288											
ACACA	31	broad.mit.edu	37	chr17	35564824	35564824	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctgaagtagggtcaggtTgcagagcagatttggttttt	13	5	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35564824	G	G	35564824	1	3	54	0	1	0	0	0	0	0	0	0	106	1827	63	5		5	ACACA	17	35564824	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	44106	35564824	45630386	3695	60289											
HNF1B	6928	broad.mit.edu	37	chr17	36104797	36104797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactcctccaaggcctgaaCcagcacctccttggtgaccc	7	18	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36104797	A	A	36104797	3	1	54	1	0	0	0	0	1	0	0	0	7319	507	18	3	1630	3	HNF1B	17	36104797	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	539973	36104797	45090413	3696	60290											
SRCIN1	80725	broad.mit.edu	37	chr17	36707497	36707497	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgggcctggatgggccttGctggcacagtccaggtcagg	17	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36707497	C	C	36707497	3	2	54	1	0	0	0	0	1	0	0	0	15254	1310	46	4	715	4	SRCIN1	17	36707497	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	602700	36707497	44487713	3697	60291											
PCGF2	7703	broad.mit.edu	37	chr17	36895193	36895193	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagagatcatgaactcaGccaggtgagcccagccacct	9	15	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36895193	T	T	36895193	1	4	54	0	1	0	0	0	0	0	0	0	11669	986	34	3		3	PCGF2	17	36895193	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	187696	36895193	44300017	3698	60292											
STAC2	342667	broad.mit.edu	37	chr17	37369693	37369693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagaaggtgggggcagtgCccattgggggtgggggctgc	23	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37369693	A	A	37369693	1	1	54	0	1	0	0	0	0	0	0	0	15358	754	26	3		3	STAC2	17	37369693	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	474500	37369693	43825517	3699	60293											
PSMD3	5709	broad.mit.edu	37	chr17	38137775	38137775	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccgactgattttagcgcCtccaatatatgactgattgt	7	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38137775	T	T	38137775	1	4	54	0	1	0	0	0	0	0	0	0	12805	696	24	4		4	PSMD3	17	38137775	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	768082	38137775	43057435	3700	60294											
KRT12	3859	broad.mit.edu	37	chr17	39022437	39022437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctcagcagctagtctcGcattgtcaatctgcaagagg	10	11	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39022437	T	T	39022437	3	4	54	1	0	0	0	0	1	0	0	0	8520	1087	38	3	892	3	KRT12	17	39022437	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	884662	39022437	42172773	3701	60295											
KRT31	3881	broad.mit.edu	37	chr17	39551497	39551497	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtctgaacaatacacacCaggttgtgctgggcctgcag	12	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39551497	T	T	39551497	2	4	54	1	0	0	0	0	0	0	0	1	8538	608	21	4		4	KRT31	17	39551497	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	529060	39551497	41643713	3702	60296											
KRT32	3882	broad.mit.edu	37	chr17	39616154	39616154	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaccagaaacatcaccaaaGagaacagttcacccatggaa	6	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39616154	C	C	39616154	1	2	54	0	1	0	0	0	0	0	0	0	8539	957	33	4		4	KRT32	17	39616154	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	64657	39616154	41579056	3703	60297											
JUP	3728	broad.mit.edu	37	chr17	39703623	39703623	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catccatcagtaggcagcagCggaagatggagaacaggaag	14	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39703623	T	T	39703623	1	4	54	0	1	0	0	0	0	0	0	0	8042	783	27	4		4	JUP	17	39703623	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87469	39703623	41491587	3704	60298											
KRT9	3857	broad.mit.edu	37	chr17	39727994	39727994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagccaccgcctaaactaCtggcactaaaaccaccccca	4	18	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39727994	A	A	39727994	3	1	54	1	0	0	0	0	1	0	0	0	8572	565	20	3	1648	3	KRT9	17	39727994	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	24371	39727994	41467216	3705	60299											
FKBP10	60681	broad.mit.edu	37	chr17	39974872	39974872	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggttgtatactgcacgagGgcatccaaccaaggactcaa	10	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39974872	A	A	39974872	1	1	54	0	1	0	0	0	0	0	0	0	5959	1247	43	4		4	FKBP10	17	39974872	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	246878	39974872	41220338	3706	60300											
RAB5C	5878	broad.mit.edu	37	chr17	40283203	40283203	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatagccatttttctcctgCcaccttcagaaggactgacc	6	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40283203	T	T	40283203	1	4	54	0	1	0	0	0	0	0	0	0	13058	754	26	4		4	RAB5C	17	40283203	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	308331	40283203	40912007	3707	60301											
ATP6V0A1	535	broad.mit.edu	37	chr17	40653195	40653195	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttatatgatgtaccttgTccttcttcttactctgcaga	5	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40653195	C	C	40653195	1	2	54	0	1	0	0	0	0	0	0	0	1172	1682	58	5		5	ATP6V0A1	17	40653195	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	369992	40653195	40542015	3708	60302											
RAMP2	10266	broad.mit.edu	37	chr17	40914582	40914582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctccctgggtccaccCcctctctcactcaagtcctc	4	21	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40914582	A	A	40914582	1	1	54	0	1	0	0	0	0	0	0	0	13130	638	22	2		2	RAMP2	17	40914582	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	261387	40914582	40280628	3709	60303											
AOC2	314	broad.mit.edu	37	chr17	40996510	40996510	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattacataaatcaaggtcaGaaatttcctgcccaacccat	4	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40996510	C	C	40996510	1	2	54	0	1	0	0	0	0	0	0	0	729	957	33	4		4	AOC2	17	40996510	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	81928	40996510	40198700	3710	60304											
AOC2	314	broad.mit.edu	37	chr17	41001430	41001430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaaggaaaggacagcccCtcccctgccccagtccttgg	12	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41001430	A	A	41001430	1	1	54	0	1	0	0	0	0	0	0	0	729	696	24	2		2	AOC2	17	41001430	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4920	41001430	40193780	3711	60305											
AOC3	8639	broad.mit.edu	37	chr17	41006663	41006663	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcaacaagtggggtcaccCccggggctaccgcatccaga	12	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41006663	G	G	41006663	3	3	54	1	0	0	0	0	1	0	0	0	730	623	22	4	1805	4	AOC3	17	41006663	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5233	41006663	40188547	3712	60306											
SLC25A39	51629	broad.mit.edu	37	chr17	42398096	42398096	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcatagttgaaccagtacAgggcttggggtgggggatgc	17	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42398096	G	G	42398096	3	3	54	1	0	0	0	0	1	0	0	0	14617	188	7	5	400	5	SLC25A39	17	42398096	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1391433	42398096	38797114	3713	60307											
GPATCH8	23131	broad.mit.edu	37	chr17	42513779	42513779	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtattcttgcacagacatCtgaatttggaattagtatta	7	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42513779	A	A	42513779	1	1	54	0	1	0	0	0	0	0	0	0	6659	928	32	3		3	GPATCH8	17	42513779	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	115683	42513779	38681431	3714	60308											
DBF4B	80174	broad.mit.edu	37	chr17	42815766	42815766	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccagactgaaggccccGttcctcaaaatcgaagatga	11	11	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42815766	T	T	42815766	2	4	54	1	0	0	0	0	0	0	0	1	4282	1132	40	3		3	DBF4B	17	42815766	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	301987	42815766	38379444	3715	60309											
ADAM11	4185	broad.mit.edu	37	chr17	42854536	42854536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcctctccccacagcgGctgctgatcgcttctgctac	9	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42854536	T	T	42854536	3	4	54	1	0	0	0	0	1	0	0	0	235	1203	42	3	1766	3	ADAM11	17	42854536	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	38770	42854536	38340674	3716	60310											
ARHGAP27	201176	broad.mit.edu	37	chr17	43473953	43473953	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgcagccgaacacctggtcTagggcagaggctcatcagct	13	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43473953	C	C	43473953	5	2	54	1	0	0	0	0	0	0	1	0	878	1536	53	5	616	5	ARHGAP27	17	43473953	Splice_Site	SNP	T	TCGA-17-Z022-01A-01W-0746-08	619417	43473953	37721257	3717	60311											
CRHR1	1394	broad.mit.edu	37	chr17	43849307	43849307	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggcccacaggaggcactGgtgaaggcttcctagagggg	17	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43849307	A	A	43849307	1	1	54	0	1	0	0	0	0	0	0	0	3903	1363	47	4		4	CRHR1	17	43849307	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	375354	43849307	37345903	3718	60312											
CRHR1	1394	broad.mit.edu	37	chr17	43893965	43893965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtaaggaagaagtggaGggtggaccatctgctgggag	17	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43893965	T	T	43893965	1	4	54	0	1	0	0	0	0	0	0	0	3903	1015	35	2		2	CRHR1	17	43893965	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	44658	43893965	37301245	3719	60313											
KIAA1267	284058	broad.mit.edu	37	chr17	44127983	44127983	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcttcatagtgaatttcggGaggcatggtgttgatgctgc	15	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44127983	A	A	44127983	3	1	54	1	0	0	0	0	1	0	0	0	8289	1174	41	4	1417	4	KIAA1267	17	44127983	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	234018	44127983	37067227	3720	60314											
SKAP1	8631	broad.mit.edu	37	chr17	46217311	46217311	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgagagatgaggttctgtgGagactgaccattgcctgtaa	13	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46217311	C	C	46217311	1	2	54	0	1	0	0	0	0	0	0	0	14468	1189	41	4		4	SKAP1	17	46217311	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2089328	46217311	34977899	3721	60315											
HOXB3	3213	broad.mit.edu	37	chr17	46636873	46636873	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccacactgttttccagcttCactgcccaactttgtagccc	5	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46636873	G	G	46636873	1	3	54	0	1	0	0	0	0	0	0	0	7369	841	29	4		4	HOXB3	17	46636873	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	419562	46636873	34558337	3722	60316											
HOXB3	3213	broad.mit.edu	37	chr17	46640799	46640799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccacctggagtacataCagctcccgatgtgcagatgc	10	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46640799	A	A	46640799	1	1	54	0	1	0	0	0	0	0	0	0	7369	493	17	3		3	HOXB3	17	46640799	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3926	46640799	34554411	3723	60317											
CALCOCO2	10241	broad.mit.edu	37	chr17	46925906	46925906	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagttaataaggctttattGaatatctaacgggtatcatt	8	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46925906	A	A	46925906	1	1	54	0	1	0	0	0	0	0	0	0	2604	1305	45	4		4	CALCOCO2	17	46925906	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	285107	46925906	34269304	3724	60318											
B4GALNT2	124872	broad.mit.edu	37	chr17	47236786	47236786	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatctctgctcactgcaacCtccgcctcccaggttcaagt	7	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47236786	T	T	47236786	1	4	54	0	1	0	0	0	0	0	0	0	1272	696	24	4		4	B4GALNT2	17	47236786	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	310880	47236786	33958424	3725	60319											
COL1A1	1277	broad.mit.edu	37	chr17	48281861	48281861	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttccccaagtgcccccctCcaacaccaaagaaggaggga	8	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48281861	A	A	48281861	1	1	54	0	1	0	0	0	0	0	0	0	3709	870	30	3		3	COL1A1	17	48281861	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1045075	48281861	32913349	3726	60320											
COL1A1	1277	broad.mit.edu	37	chr17	48281885	48281885	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaaagaaggagggaaaaGgcccccaccctcagagctcc	10	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48281885	T	T	48281885	1	4	54	0	1	0	0	0	0	0	0	0	3709	1015	35	2		2	COL1A1	17	48281885	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	24	48281885	32913325	3727	60321											
MYCBPAP	84073	broad.mit.edu	37	chr17	48608814	48608814	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgggcccaagcaaccttctgGaaaacgggttaataaataaa	9	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48608814	T	T	48608814	1	4	54	0	1	0	0	0	0	0	0	0	10113	1189	41	3		3	MYCBPAP	17	48608814	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	326929	48608814	32586396	3728	60322											
CA10	56934	broad.mit.edu	37	chr17	49916015	49916015	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaaaacttccatagaaatTcaatgagacactgcatagta	5	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49916015	G	G	49916015	1	3	54	0	1	0	0	0	0	0	0	0	2537	1798	62	5		5	CA10	17	49916015	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1307201	49916015	31279195	3729	60323											
CA10	56934	broad.mit.edu	37	chr17	50008362	50008362	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcttaccttcctgcccccCgtgttgatgcgaagaggtgt	12	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50008362	A	A	50008362	2	1	54	1	0	0	0	0	0	0	0	1	2537	639	23	1		1	CA10	17	50008362	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	92347	50008362	31186848	3730	60324											
CA10	56934	broad.mit.edu	37	chr17	50051527	50051527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtagaggcaggcagatcaCgaggtcaggagatcgagacc	16	8	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50051527	A	A	50051527	1	1	54	0	1	0	0	0	0	0	0	0	2537	551	19	3		3	CA10	17	50051527	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43165	50051527	31143683	3731	60325											
CA10	56934	broad.mit.edu	37	chr17	50088816	50088816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatcttttctaaataatcaTaataaagtggaatagtccat	4	5	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50088816	C	C	50088816	1	2	54	0	1	0	0	0	0	0	0	0	2537	1421	49	5		5	CA10	17	50088816	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	37289	50088816	31106394	3732	60326											
CA10	56934	broad.mit.edu	37	chr17	50136920	50136920	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatggctgaattagaagatCtatcaaatgtaaatgacaag	8	5	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50136920	A	A	50136920	1	1	54	0	1	0	0	0	0	0	0	0	2537	928	32	3		3	CA10	17	50136920	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	48104	50136920	31058290	3733	60327											
KIF2B	84643	broad.mit.edu	37	chr17	51901441	51901441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacatatgagaagctggaCctcaaagtctatgggacatt	9	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51901441	A	A	51901441	3	1	54	1	0	0	0	0	1	0	0	0	8368	506	18	3	1049	3	KIF2B	17	51901441	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1764521	51901441	29293769	3734	60328											
TOM1L1	10040	broad.mit.edu	37	chr17	53027483	53027483	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttagctcctgctgtcactAcagagtaagtcatttacaaa	6	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53027483	G	G	53027483	3	3	54	1	0	0	0	0	1	0	0	0	16475	391	14	5	1420	5	TOM1L1	17	53027483	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1126042	53027483	28167727	3735	60329											
MMD	23531	broad.mit.edu	37	chr17	53476782	53476782	+	Intron	DEL	C	-	-													actcttgtctagctctccagCtttattacaagacttgtgct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53476782	-	-	53476782	6	5	54	0	1	1	0	1	0	0	0	0	9736	812	28	0		0	MMD	17	53476782	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	449299	53476782	27718428	3736	60330											
ANKFN1	162282	broad.mit.edu	37	chr17	54520214	54520214	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactttgcagggccaacagtAttttgttcaagtctcggctt	9	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54520214	G	G	54520214	3	3	54	1	0	0	0	0	1	0	0	0	625	449	16	5	1062	5	ANKFN1	17	54520214	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1043432	54520214	26674996	3737	60331											
ANKFN1	162282	broad.mit.edu	37	chr17	54559639	54559639	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaattttgtgagatgttTtatgccagtttggtgttgtt	12	2	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54559639	G	G	54559639	1	3	54	0	1	0	0	0	0	0	0	0	625	1856	64	5		5	ANKFN1	17	54559639	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	39425	54559639	26635571	3738	60332											
COIL	8161	broad.mit.edu	37	chr17	55027749	55027749	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcagttgtatttttggtaGagggttcttcctttgataac	10	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55027749	C	C	55027749	3	2	54	1	0	0	0	0	1	0	0	0	3697	942	33	4	900	4	COIL	17	55027749	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	468110	55027749	26167461	3739	60333											
SCPEP1	59342	broad.mit.edu	37	chr17	55062582	55062582	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttactaggggagctttgcTaatgtggaagtccctggttc	13	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55062582	C	C	55062582	1	2	54	0	1	0	0	0	0	0	0	0	14048	1537	53	5		5	SCPEP1	17	55062582	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	34833	55062582	26132628	3740	60334											
MSI2	124540	broad.mit.edu	37	chr17	55583564	55583564	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgatgggccaattagccacGatcagggtttccctgctccg	11	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55583564	T	T	55583564	1	4	54	0	1	0	0	0	0	0	0	0	9970	1073	37	3		3	MSI2	17	55583564	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	520982	55583564	25611646	3741	60335											
LPO	4025	broad.mit.edu	37	chr17	56342334	56342334	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttggaggatggtcaaagaTggtatgccctttcagggaag	14	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56342334	A	A	56342334	3	1	54	1	0	0	0	0	1	0	0	0	9009	1478	51	5	1552	5	LPO	17	56342334	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	758770	56342334	24852876	3742	60336											
YPEL2	388403	broad.mit.edu	37	chr17	57477261	57477261	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtttgttggtgaagtttgGgggcggggtgttgggagtag	22	1	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57477261	T	T	57477261	1	4	54	0	1	0	0	0	0	0	0	0	17617	1247	43	2		2	YPEL2	17	57477261	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1134927	57477261	23717949	3743	60337											
RPS6KB1	6198	broad.mit.edu	37	chr17	58024239	58024239	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacgactcaaaatgacaGtttcagagagtcaatgtcat	8	7	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58024239	A	A	58024239	1	1	54	0	1	0	0	0	0	0	0	0	13767	1044	36	4		4	RPS6KB1	17	58024239	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	546978	58024239	23170971	3744	60338											
BCAS3	54828	broad.mit.edu	37	chr17	58804520	58804520	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattaaaagaaaaatatccCaaagtttagaactggatctc	5	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58804520	T	T	58804520	1	4	54	0	1	0	0	0	0	0	0	0	1357	609	21	4		4	BCAS3	17	58804520	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	780281	58804520	22390690	3745	60339											
BCAS3	54828	broad.mit.edu	37	chr17	58887692	58887692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactccaccaacttctggGgtggcatggggtccaggggc	14	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58887692	T	T	58887692	1	4	54	0	1	0	0	0	0	0	0	0	1357	1247	43	2		2	BCAS3	17	58887692	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	83172	58887692	22307518	3746	60340											
BCAS3	54828	broad.mit.edu	37	chr17	59063628	59063628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtccttaggttgcttccacAtcttggctattgtgaataat	9	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59063628	T	T	59063628	1	4	54	0	1	0	0	0	0	0	0	0	1357	232	8	5		5	BCAS3	17	59063628	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	175936	59063628	22131582	3747	60341											
BRIP1	83990	broad.mit.edu	37	chr17	59820264	59820264	+	Intron	DEL	A	-	-													accataaaccttcaatttgtAaaaaagcactataaaagcaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59820264	-	-	59820264	6	5	54	0	1	1	0	1	0	0	0	0	1523	377	13	0		0	BRIP1	17	59820264	Intron	DEL	A	TCGA-17-Z022-01A-01W-0746-08	756636	59820264	21374946	3748	60342											
MARCH10	162333	broad.mit.edu	37	chr17	60814219	60814219	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgacctctgcaatttTcagcattttcttcaaaattt	4	8	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60814219	C	C	60814219	3	2	54	1	0	0	0	0	1	0	0	0	9391	1783	62	5	1440	5	MARCH10	17	60814219	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	993955	60814219	20380991	3749	60343											
MARCH10	162333	broad.mit.edu	37	chr17	60865926	60865926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcgcgtttcttctcatttGggtctcttctatattcctgt	7	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60865926	T	T	60865926	3	4	54	1	0	0	0	0	1	0	0	0	9391	1348	47	2	2337	2	MARCH10	17	60865926	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	51707	60865926	20329284	3750	60344											
CYB561	1534	broad.mit.edu	37	chr17	61513310	61513310	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggatgtttggggtgggggCgggcccatcacagctctggg	21	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61513310	T	T	61513310	1	4	54	0	1	0	0	0	0	0	0	0	4152	783	27	4		4	CYB561	17	61513310	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	647384	61513310	19681900	3751	60345											
KCNH6	81033	broad.mit.edu	37	chr17	61600905	61600906	+	Intron	INS	-	G	G													ggagtcctggttccgtgaaaINSgggggggctggaccccttta							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61600906	G	G	61600905	6	5	54	0	1	1	1	0	0	0	0	0	8106	87	3	0		0	KCNH6	17	61600905	Intron	INS	-	TCGA-17-Z022-01A-01W-0746-08	87595	61600905	19594305	3752	60346											
KCNH6	81033	broad.mit.edu	37	chr17	61611231	61611231	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccccgtgcctgacctccctCggcccccacccccaggtcct	8	24	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61611231	G	G	61611231	1	3	54	0	1	0	0	0	0	0	0	0	8106	899	31	4		4	KCNH6	17	61611231	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	10326	61611231	19583979	3753	60347											
MAP3K3	4215	broad.mit.edu	37	chr17	61768926	61768926	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttgagaaggacttggGgtactctcttttccaaactg	10	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61768926	C	C	61768926	1	2	54	0	1	0	0	0	0	0	0	0	9343	1247	43	4		4	MAP3K3	17	61768926	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	157695	61768926	19426284	3754	60348											
ERN1	2081	broad.mit.edu	37	chr17	62175664	62175664	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaccttgggcatgtacaatCacagaccccccactcccaag	6	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62175664	A	A	62175664	1	1	54	0	1	0	0	0	0	0	0	0	5279	841	29	3		3	ERN1	17	62175664	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	406738	62175664	19019546	3755	60349											
DDX5	1655	broad.mit.edu	37	chr17	62500324	62500324	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacacgggtaggtagaactGaaaagtagcacttaccaggg	12	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62500324	C	C	62500324	1	2	54	0	1	0	0	0	0	0	0	0	4400	1305	45	4		4	DDX5	17	62500324	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	324660	62500324	18694886	3756	60350											
DDX5	1655	broad.mit.edu	37	chr17	62500433	62500433	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttctgtatgtttccacctCttgctgcaaaacaaattata	4	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62500433	G	G	62500433	3	3	54	1	0	0	0	0	1	0	0	0	4400	922	32	4	1674	4	DDX5	17	62500433	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	109	62500433	18694777	3757	60351											
AXIN2	8313	broad.mit.edu	37	chr17	63622195	63622195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctaccccctgcccctacCctgttcgtggaaaaattgtc	7	16	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63622195	A	A	63622195	1	1	54	0	1	0	0	0	0	0	0	0	1242	638	22	2		2	AXIN2	17	63622195	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1121762	63622195	17573015	3758	60352											
HELZ	9931	broad.mit.edu	37	chr17	65163943	65163943	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtagaaaactagtttgaatAttttacatcaaaaatatata	4	3	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65163943	T	T	65163943	1	4	54	0	1	0	0	0	0	0	0	0	7116	464	16	5		5	HELZ	17	65163943	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1541748	65163943	16031267	3759	60353											
ARSG	22901	broad.mit.edu	37	chr17	66382180	66382181	+	Intron	DNP	CA	AT	AT													agctcactgcagacccatcaCatcaggtaaatgtgatgtct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	66382181	AT	AT	66382180	1	1	54	0	1	0	0	0	0	0	0	0	996	493	17	3		3	ARSG	17	66382180	Intron	DNP	CA	TCGA-17-Z022-01A-01W-0746-08	1218237	66382180	14813030	3760	60354											
ABCA9	10350	broad.mit.edu	37	chr17	66988484	66988484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattggaattgatttaaagaGtttgattatataaaaattcg	7	1	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66988484	T	T	66988484	1	4	54	0	1	0	0	0	0	0	0	0	39	1044	36	3		3	ABCA9	17	66988484	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	606304	66988484	14206726	3761	60355											
ABCA6	23460	broad.mit.edu	37	chr17	67084304	67084304	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tataaagttaaatttcacccCaacctgaaaacaggatcttt	4	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67084304	T	T	67084304	1	4	54	0	1	0	0	0	0	0	0	0	36	609	21	4		4	ABCA6	17	67084304	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	95820	67084304	14110906	3762	60356											
ABCA6	23460	broad.mit.edu	37	chr17	67109923	67109923	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatccaaaatgaagaagAcatttatgcagccaaaagac	6	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67109923	T	T	67109923	1	4	54	0	1	0	0	0	0	0	0	0	36	290	10	5		5	ABCA6	17	67109923	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	25619	67109923	14085287	3763	60357											
ABCA6	23460	broad.mit.edu	37	chr17	67133425	67133425	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaactctttttttgccatGagtacacctacctttcaaaa	4	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67133425	C	C	67133425	1	2	54	0	1	0	0	0	0	0	0	0	36	1305	45	4		4	ABCA6	17	67133425	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23502	67133425	14061785	3764	60358											
ABCA10	10349	broad.mit.edu	37	chr17	67197662	67197662	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatggcttcttttccatggAattctggagacaccggttca	9	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67197662	G	G	67197662	3	3	54	1	0	0	0	0	1	0	0	0	29	246	9	5	3597	5	ABCA10	17	67197662	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	64237	67197662	13997548	3765	60359											
MAP2K6	5608	broad.mit.edu	37	chr17	67452857	67452857	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagatgtctccccacctaGccttcctccttcatcctagt	5	17	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67452857	C	C	67452857	1	2	54	0	1	0	0	0	0	0	0	0	9333	986	34	4		4	MAP2K6	17	67452857	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	255195	67452857	13742353	3766	60360											
MAP2K6	5608	broad.mit.edu	37	chr17	67484337	67484337	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacaaaaaaatgctccacatCactaatcatcagagaaatgc	4	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67484337	A	A	67484337	1	1	54	0	1	0	0	0	0	0	0	0	9333	841	29	3		3	MAP2K6	17	67484337	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	31480	67484337	13710873	3767	60361											
MAP2K6	5608	broad.mit.edu	37	chr17	67501726	67501726	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctcattcatgaccacagtCtgtatttgagaagctctgtc	7	11	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67501726	G	G	67501726	1	3	54	0	1	0	0	0	0	0	0	0	9333	928	32	4		4	MAP2K6	17	67501726	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17389	67501726	13693484	3768	60362											
KCNJ16	3773	broad.mit.edu	37	chr17	68128552	68128552	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctattaaatgatccagacatCacaccttgtgttgacaacgt	6	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68128552	T	T	68128552	2	4	54	1	0	0	0	0	0	0	0	1	8120	816	29	4		4	KCNJ16	17	68128552	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	626826	68128552	13066658	3769	60363											
KCNJ16	3773	broad.mit.edu	37	chr17	68128672	68128672	+	Silent	SNP	C	G	G													gaatgttctgtggccgtgctCatggtgatcctccagtccat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68128672	G	G	68128672	2	3	54	1	0	0	0	0	0	0	0	1	8120	813	29	4		4	KCNJ16	17	68128672	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	120	68128672	13066538	3770	60364	284	2									
KCNJ16	3773	broad.mit.edu	37	chr17	68128681	68128681	+	Silent	SNP	C	T	T													gtggccgtgctcatggtgatCctccagtccatcttaagttg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68128681	T	T	68128681	2	4	54	1	0	0	0	0	0	0	0	1	8120	845	30	4		4	KCNJ16	17	68128681	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9	68128681	13066529	3771	60365	284	2									
KCNJ16	3773	broad.mit.edu	37	chr17	68128951	68128951	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaaagacctcaaattagtCaacgaccaaatcatcctggt	5	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68128951	G	G	68128951	2	3	54	1	0	0	0	0	0	0	0	1	8120	813	29	4		4	KCNJ16	17	68128951	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	270	68128951	13066259	3772	60366											
KCNJ2	3759	broad.mit.edu	37	chr17	68171771	68171771	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactcttgtcttcagtcaCaatgccgtgattgccatgag	10	10	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68171771	T	T	68171771	2	4	54	1	0	0	0	0	0	0	0	1	8121	477	17	4		4	KCNJ2	17	68171771	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42820	68171771	13023439	3773	60367											
KCNJ2	3759	broad.mit.edu	37	chr17	68172162	68172162	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggccaccgctatgagCctgtgctctttgaagagaag	14	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68172162	G	G	68172162	3	3	54	1	0	0	0	0	1	0	0	0	8121	739	26	4	984	4	KCNJ2	17	68172162	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	391	68172162	13023048	3774	60368											
SLC39A11	201266	broad.mit.edu	37	chr17	70845750	70845750	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccttcaggcagtggctgtCacgctcacgggcaagacctc	11	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70845750	A	A	70845750	1	1	54	0	1	0	0	0	0	0	0	0	14728	841	29	3		3	SLC39A11	17	70845750	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2673588	70845750	10349460	3775	60369											
SLC39A11	201266	broad.mit.edu	37	chr17	70845913	70845913	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtggctgccgccttctttCtctgatatgcctcaccattc	7	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70845913	G	G	70845913	3	3	54	1	0	0	0	0	1	0	0	0	14728	913	32	4	566	4	SLC39A11	17	70845913	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	163	70845913	10349297	3776	60370											
SDK2	54549	broad.mit.edu	37	chr17	71574829	71574829	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacactcaggtcaaagggtCaggggcagggattggggttg	19	6	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71574829	G	G	71574829	1	3	54	0	1	0	0	0	0	0	0	0	14082	841	29	4		4	SDK2	17	71574829	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	728916	71574829	9620381	3777	60371											
CD300C	10871	broad.mit.edu	37	chr17	72540716	72540716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccagccctaggctcaggCaggcctggtgctgagaaaag	14	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72540716	A	A	72540716	1	1	54	0	1	0	0	0	0	0	0	0	3027	725	25	3		3	CD300C	17	72540716	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	965887	72540716	8654494	3778	60372											
MRPL38	64978	broad.mit.edu	37	chr17	73897091	73897091	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggtactcagcatctgGctccagcaggtgcccatctg	13	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73897091	A	A	73897091	3	1	54	1	0	0	0	0	1	0	0	0	9895	1203	42	4	476	4	MRPL38	17	73897091	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1356375	73897091	7298119	3779	60373											
PRCD	768206	broad.mit.edu	37	chr17	74538504	74538504	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgtcctaaatgccaactGattccttaggtggtcctgcc	8	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74538504	A	A	74538504	1	1	54	0	1	0	0	0	0	0	0	0	12554	1305	45	4		4	PRCD	17	74538504	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	641413	74538504	6656706	3780	60374											
ENPP7	339221	broad.mit.edu	37	chr17	77708904	77708904	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctaccaaggggtggctgtGacgcggagccggaaagaagg	17	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77708904	T	T	77708904	2	4	54	1	0	0	0	0	0	0	0	1	5177	1277	45	3		3	ENPP7	17	77708904	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3170400	77708904	3486306	3781	60375											
GAA	2548	broad.mit.edu	37	chr17	78078651	78078651	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgacgtcccccccaacagccGcttcgattgcgcccctgaca	8	20	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78078651	C	C	78078651	3	2	54	1	0	0	0	0	1	0	0	0	6207	1087	38	4	268	4	GAA	17	78078651	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	369747	78078651	3116559	3782	60376											
CARD14	79092	broad.mit.edu	37	chr17	78163505	78163505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctgcttgcctagggcaGgcctctggggaagccagcac	14	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78163505	T	T	78163505	1	4	54	0	1	0	0	0	0	0	0	0	2672	1015	35	2		2	CARD14	17	78163505	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	84854	78163505	3031705	3783	60377											
RPTOR	57521	broad.mit.edu	37	chr17	78831510	78831510	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgaagatagcaccgcaGctggtcccgcgtggcacccc	13	15	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78831510	A	A	78831510	1	1	54	0	1	0	0	0	0	0	0	0	13776	986	34	4		4	RPTOR	17	78831510	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	668005	78831510	2363700	3784	60378											
TSPAN10	83882	broad.mit.edu	37	chr17	79612190	79612191	+	Missense_Mutation	DNP	CC	TT	TT													aggaccagccccttccctctCcccagggagcagctgcgtca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	79612191	TT	TT	79612190	3	4	54	1	0	0	0	0	1	0	0	0	16759	855	30	4	215	4	TSPAN10	17	79612190	Missense_Mutation	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	780680	79612190	1583020	3785	60379											
NARF	26502	broad.mit.edu	37	chr17	80438944	80438944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagccctaaatatgggtgCccctctcccacagaacctgt	7	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80438944	T	T	80438944	1	4	54	0	1	0	0	0	0	0	0	0	10261	754	26	4		4	NARF	17	80438944	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	826754	80438944	756266	3786	60380											
TBCD	6904	broad.mit.edu	37	chr17	80758865	80758865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaagccgaaggtggcaGcatggaggtaggcaccatga	15	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80758865	T	T	80758865	3	4	54	1	0	0	0	0	1	0	0	0	15755	971	34	3	977	3	TBCD	17	80758865	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	319921	80758865	436345	3787	60381											
ENOSF1	55556	broad.mit.edu	37	chr18	672785	672785	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatcacatcctgtgtactTgtttcacggacatgaggagc	10	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	672785	G	G	672785	1	3	54	0	1	0	0	0	0	0	0	0	5167	1827	63	5		5	ENOSF1	18	672785	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08		672785	77404463	3788	60382											
SMCHD1	23347	broad.mit.edu	37	chr18	2673367	2673367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacagatcaaattggtaaGgaaataatactgtaaagcaa	7	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2673367	T	T	2673367	1	4	54	0	1	0	0	0	0	0	0	0	14902	1015	35	2		2	SMCHD1	18	2673367	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2000582	2673367	75403881	3789	60383											
EMILIN2	84034	broad.mit.edu	37	chr18	2909624	2909624	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcacgtaggcctcagttttCcaggccctccccctggagga	12	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2909624	G	G	2909624	1	3	54	0	1	0	0	0	0	0	0	0	5136	870	30	4		4	EMILIN2	18	2909624	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	236257	2909624	75167624	3790	60384											
DLGAP1	9229	broad.mit.edu	37	chr18	3879381	3879381	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtactgtgaggccgagcGgtcggggcacctgcccatgg	17	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3879381	A	A	3879381	3	1	54	1	0	0	0	0	1	0	0	0	4599	1116	39	4	2340	4	DLGAP1	18	3879381	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	969757	3879381	74197867	3791	60385											
DLGAP1	9229	broad.mit.edu	37	chr18	4176817	4176817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattggaagaaggaatggagCggatgccattgttcatggaa	14	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4176817	A	A	4176817	1	1	54	0	1	0	0	0	0	0	0	0	4599	783	27	3		3	DLGAP1	18	4176817	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	297436	4176817	73900431	3792	60386											
EPB41L3	23136	broad.mit.edu	37	chr18	5395638	5395638	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtagtggtggtggtactGgtggtttcagatgtgatcgt	17	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5395638	C	C	5395638	2	2	54	1	0	0	0	0	0	0	0	1	5196	1335	47	4		4	EPB41L3	18	5395638	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1218821	5395638	72681610	3793	60387											
EPB41L3	23136	broad.mit.edu	37	chr18	5416024	5416024	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgggaggtaatgctgcaaGctctggggcaggaggttggt	18	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5416024	A	A	5416024	2	1	54	1	0	0	0	0	0	0	0	1	5196	962	34	4		4	EPB41L3	18	5416024	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	20386	5416024	72661224	3794	60388											
EPB41L3	23136	broad.mit.edu	37	chr18	5416170	5416170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgtctgtagctaaaagCcacatcttgatcccctaggt	8	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5416170	A	A	5416170	3	1	54	1	0	0	0	0	1	0	0	0	5196	739	26	3	1589	3	EPB41L3	18	5416170	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	146	5416170	72661078	3795	60389											
EPB41L3	23136	broad.mit.edu	37	chr18	5491195	5491195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatttccctttcccactggCtggatgtgcaggtcttaaac	9	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5491195	A	A	5491195	1	1	54	0	1	0	0	0	0	0	0	0	5196	812	28	3		3	EPB41L3	18	5491195	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	75025	5491195	72586053	3796	60390											
EPB41L3	23136	broad.mit.edu	37	chr18	5571954	5571954	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaatttcctgcatttcActcttggctagacctgcgta	6	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5571954	T	T	5571954	1	4	54	0	1	0	0	0	0	0	0	0	5196	174	6	5		5	EPB41L3	18	5571954	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	80759	5571954	72505294	3797	60391											
EPB41L3	23136	broad.mit.edu	37	chr18	5627940	5627940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgaccccttggtgtcaCtaagtctgaactgtaattga	8	9	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5627940	A	A	5627940	1	1	54	0	1	0	0	0	0	0	0	0	5196	580	20	3		3	EPB41L3	18	5627940	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	55986	5627940	72449308	3798	60392											
LAMA1	284217	broad.mit.edu	37	chr18	6982615	6982615	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacagaaccacttaagcgtGgtgagagcagggcagggtgg	16	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6982615	A	A	6982615	1	1	54	0	1	0	0	0	0	0	0	0	8677	1363	47	4		4	LAMA1	18	6982615	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1354675	6982615	71094633	3799	60393											
LAMA1	284217	broad.mit.edu	37	chr18	7013956	7013956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccaaggaacactgatcgCaggcccggccaccaaatttt	8	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7013956	A	A	7013956	3	1	54	1	0	0	0	0	1	0	0	0	8677	710	25	3	6170	3	LAMA1	18	7013956	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	31341	7013956	71063292	3800	60394											
LAMA1	284217	broad.mit.edu	37	chr18	7038532	7038532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagccgacctccccaccCaatccatttccccacagaag	7	18	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7038532	A	A	7038532	1	1	54	0	1	0	0	0	0	0	0	0	8677	609	21	2		2	LAMA1	18	7038532	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	24576	7038532	71038716	3801	60395											
PTPRM	5797	broad.mit.edu	37	chr18	7712977	7712977	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggagaaattccccaacctAgcaagacaggccaacattca	7	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7712977	G	G	7712977	1	3	54	0	1	0	0	0	0	0	0	0	12914	435	15	5		5	PTPRM	18	7712977	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	674445	7712977	70364271	3802	60396											
RAB31	11031	broad.mit.edu	37	chr18	9842272	9842272	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccagaggctggcgttgggGctgaaagattcaaccctcta	12	12	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9842272	C	C	9842272	1	2	54	0	1	0	0	0	0	0	0	0	13028	1218	42	4		4	RAB31	18	9842272	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2129295	9842272	68234976	3803	60397											
FAM38B	63895	broad.mit.edu	37	chr18	10766309	10766309	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcagaaaggaggggaaggGgaaggagaagtaggaggaga	21	1	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10766309	A	A	10766309	1	1	54	0	1	0	0	0	0	0	0	0	5606	1247	43	4		4	FAM38B	18	10766309	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	924037	10766309	67310939	3804	60398											
FAM38B	63895	broad.mit.edu	37	chr18	10885977	10885977	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaaacaaaatgtcaagTgcaaagaatcaagaagaaaa	10	4	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10885977	C	C	10885977	1	2	54	0	1	0	0	0	0	0	0	0	5606	1711	59	5		5	FAM38B	18	10885977	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	119668	10885977	67191271	3805	60399											
SPIRE1	56907	broad.mit.edu	37	chr18	12479594	12479594	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttactggttgaaaaatgGgaagagattaagcaacaact	10	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12479594	A	A	12479594	1	1	54	0	1	0	0	0	0	0	0	0	15189	1247	43	4		4	SPIRE1	18	12479594	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1593617	12479594	65597654	3806	60400											
CEP192	55125	broad.mit.edu	37	chr18	13114266	13114266	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgagtatgttgtttttgtCattcttatgagttttttccc	7	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13114266	T	T	13114266	1	4	54	0	1	0	0	0	0	0	0	0	3281	841	29	4		4	CEP192	18	13114266	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	634672	13114266	64962982	3807	60401											
C18orf1	753	broad.mit.edu	37	chr18	13594426	13594426	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcgggtgtggtaacgcTtgcctgaaatcccagcactt	14	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13594426	C	C	13594426	1	2	54	0	1	0	0	0	0	0	0	0	1912	1624	56	5		5	C18orf1	18	13594426	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	480160	13594426	64482822	3808	60402											
C18orf1	753	broad.mit.edu	37	chr18	13645418	13645418	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctatgtatagcgggggtcCatgcccacccagcagcaact	11	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645418	T	T	13645418	3	4	54	1	0	0	0	0	1	0	0	0	1912	594	21	4	782	4	C18orf1	18	13645418	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	50992	13645418	64431830	3809	60403											
MC2R	4158	broad.mit.edu	37	chr18	13918292	13918292	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacacttcagatctgctctCtttgcacatttccttttctt	4	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13918292	G	G	13918292	1	3	54	0	1	0	0	0	0	0	0	0	9457	928	32	4		4	MC2R	18	13918292	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	272874	13918292	64158956	3810	60404											
ANKRD30B	374860	broad.mit.edu	37	chr18	14808418	14808418	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaatacaaaaacccaaaaGaccccaaaacctagtgtaat	3	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14808418	T	T	14808418	1	4	54	0	1	0	0	0	0	0	0	0	659	957	33	3		3	ANKRD30B	18	14808418	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	890126	14808418	63268830	3811	60405											
NPC1	4864	broad.mit.edu	37	chr18	21127808	21127808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctgctcaaaggtaaatGtgtttacagtttcttcttag	8	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21127808	T	T	21127808	1	4	54	0	1	0	0	0	0	0	0	0	10665	1392	48	3		3	NPC1	18	21127808	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6319390	21127808	56949440	3812	60406											
ZNF521	25925	broad.mit.edu	37	chr18	22804988	22804988	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagggagggaaaccgctctCcgcaaatagggcacatgtag	13	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22804988	G	G	22804988	3	3	54	1	0	0	0	0	1	0	0	0	18092	855	30	4	1061	4	ZNF521	18	22804988	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1677180	22804988	55272260	3813	60407											
CHST9	83539	broad.mit.edu	37	chr18	24608588	24608588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagcacgatctcggctcacGgcaagctctgccttccgggt	12	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24608588	T	T	24608588	1	4	54	0	1	0	0	0	0	0	0	0	3442	1131	39	1		1	CHST9	18	24608588	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1803600	24608588	53468660	3814	60408											
CDH2	1000	broad.mit.edu	37	chr18	25570041	25570041	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataagtaagctacaaaaacaCtacaaacagcatttcatacc	3	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25570041	T	T	25570041	1	4	54	0	1	0	0	0	0	0	0	0	3135	580	20	4		4	CDH2	18	25570041	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	961453	25570041	52507207	3815	60409											
DSC3	1825	broad.mit.edu	37	chr18	28588383	28588383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctcacatgaactgtaaCcaaggctctgttcaaggctg	8	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28588383	A	A	28588383	3	1	54	1	0	0	0	0	1	0	0	0	4807	507	18	3	1377	3	DSC3	18	28588383	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3018342	28588383	49488865	3816	60410											
DSC3	1825	broad.mit.edu	37	chr18	28605691	28605691	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagaaacatagtttaaTaatttaaagtcaggcatatc	6	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28605691	A	A	28605691	1	1	54	0	1	0	0	0	0	0	0	0	4807	1421	49	5		5	DSC3	18	28605691	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	17308	28605691	49471557	3817	60411											
DSC1	1823	broad.mit.edu	37	chr18	28711672	28711672	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatgtccacctcctttgttgGaatccaaagtgtagcctcct	8	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28711672	A	A	28711672	3	1	54	1	0	0	0	0	1	0	0	0	4805	1174	41	4	360	4	DSC1	18	28711672	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	105981	28711672	49365576	3818	60412											
DSG1	1828	broad.mit.edu	37	chr18	28919734	28919734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagaacttgcactggtaCaattaatattaacattcaaa	4	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28919734	A	A	28919734	3	1	54	1	0	0	0	0	1	0	0	0	4816	478	17	3	1475	3	DSG1	18	28919734	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	208062	28919734	49157514	3819	60413											
C18orf34	374864	broad.mit.edu	37	chr18	31001810	31001810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtagaaaaggaaaggtaCtattttgtctaaaaagttta	9	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31001810	A	A	31001810	1	1	54	0	1	0	0	0	0	0	0	0	1920	580	20	3		3	C18orf34	18	31001810	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2082076	31001810	47075438	3820	60414											
CELF4	56853	broad.mit.edu	37	chr18	35111823	35111823	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcagtgagagggcagggCactggtctgctttggtcact	17	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35111823	T	T	35111823	1	4	54	0	1	0	0	0	0	0	0	0	3248	725	25	4		4	CELF4	18	35111823	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4110013	35111823	42965425	3821	60415											
PIK3C3	5289	broad.mit.edu	37	chr18	39629595	39629595	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattaatgactaccagtagaCatacattgtatatgcccatg	6	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39629595	T	T	39629595	1	4	54	0	1	0	0	0	0	0	0	0	12007	493	17	4		4	PIK3C3	18	39629595	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4517772	39629595	38447653	3822	60416											
RIT2	6014	broad.mit.edu	37	chr18	40572320	40572320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattcttgtcgtaaaatggGcaaatggtctgaggtgcctg	12	6	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40572320	T	T	40572320	1	4	54	0	1	0	0	0	0	0	0	0	13498	1218	42	3		3	RIT2	18	40572320	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	942725	40572320	37504928	3823	60417											
SYT4	6860	broad.mit.edu	37	chr18	40853859	40853859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccatggctggcaagcCacgggcttccttgatattga	10	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40853859	A	A	40853859	3	1	54	1	0	0	0	0	1	0	0	0	15595	594	21	2	754	2	SYT4	18	40853859	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	281539	40853859	37223389	3824	60418											
SETBP1	26040	broad.mit.edu	37	chr18	42313902	42313902	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgtgtggctgagaccctGagggcattcatcacaggatc	13	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42313902	T	T	42313902	1	4	54	0	1	0	0	0	0	0	0	0	14242	1305	45	3		3	SETBP1	18	42313902	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1460043	42313902	35763346	3825	60419											
SETBP1	26040	broad.mit.edu	37	chr18	42390263	42390263	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccctccttcctgaacacCcatctaacattgggaaaatt	6	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42390263	T	T	42390263	1	4	54	0	1	0	0	0	0	0	0	0	14242	638	22	4		4	SETBP1	18	42390263	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	76361	42390263	35686985	3826	60420											
SETBP1	26040	broad.mit.edu	37	chr18	42643106	42643106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccatccagtgcgaagtgCggaagatgtgcaactacacc	11	11	0	1	rs145996171	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42643106	A	A	42643106	2	1	54	1	0	0	0	0	0	0	0	1	14242	759	27	3		3	SETBP1	18	42643106	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	252843	42643106	35434142	3827	60421											
SLC14A2	8170	broad.mit.edu	37	chr18	43028610	43028610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccaaaaaacctgcccttGtccctccatccagaagtgac	5	17	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43028610	T	T	43028610	1	4	54	0	1	0	0	0	0	0	0	0	14510	1392	48	3		3	SLC14A2	18	43028610	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	385504	43028610	35048638	3828	60422											
SLC14A2	8170	broad.mit.edu	37	chr18	43051677	43051677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgctgctgatgggtccCtaattttggtgatgactctt	11	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43051677	A	A	43051677	1	1	54	0	1	0	0	0	0	0	0	0	14510	696	24	2		2	SLC14A2	18	43051677	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	23067	43051677	35025571	3829	60423											
SLC14A2	8170	broad.mit.edu	37	chr18	43108987	43108987	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccacatggagaaagagagGccacatggagtaaaatcaag	12	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43108987	A	A	43108987	1	1	54	0	1	0	0	0	0	0	0	0	14510	1218	42	4		4	SLC14A2	18	43108987	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	57310	43108987	34968261	3830	60424											
SLC14A2	8170	broad.mit.edu	37	chr18	43207393	43207393	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccctcacagagcctaccatCtagttgaaggagacaagatt	8	11	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43207393	G	G	43207393	1	3	54	0	1	0	0	0	0	0	0	0	14510	928	32	4		4	SLC14A2	18	43207393	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	98406	43207393	34869855	3831	60425											
KIAA1632	57724	broad.mit.edu	37	chr18	43464725	43464725	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagagcctgctgttcttcaGaatggtttcaagtacttttc	9	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43464725	C	C	43464725	3	2	54	1	0	0	0	0	1	0	0	0	8319	933	33	4	2638	4	KIAA1632	18	43464725	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	257332	43464725	34612523	3832	60426											
KIAA1632	57724	broad.mit.edu	37	chr18	43535185	43535185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgggaatcagttaccacCttcagatggtctcctttgaa	9	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43535185	A	A	43535185	3	1	54	1	0	0	0	0	1	0	0	0	8319	680	24	2	7728	2	KIAA1632	18	43535185	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	70460	43535185	34542063	3833	60427											
PSTPIP2	9050	broad.mit.edu	37	chr18	43616660	43616660	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaatctgcctgggtacgacCaaggaaaaggatatttccta	10	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43616660	G	G	43616660	1	3	54	0	1	0	0	0	0	0	0	0	12828	609	21	4		4	PSTPIP2	18	43616660	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	81475	43616660	34460588	3834	60428											
KATNAL2	83473	broad.mit.edu	37	chr18	44595747	44595747	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acttcaggactggggcacacGagagctgagcagtcacttcc	12	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44595747	A	A	44595747	1	1	54	0	1	0	0	0	0	0	0	0	8056	1073	37	4		4	KATNAL2	18	44595747	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	979087	44595747	33481501	3835	60429											
ZBTB7C	201501	broad.mit.edu	37	chr18	45744076	45744076	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatcacggcactaacccCactgccccaactcacagggc	6	19	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45744076	A	A	45744076	1	1	54	0	1	0	0	0	0	0	0	0	17681	609	21	2		2	ZBTB7C	18	45744076	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1148329	45744076	32333172	3836	60430											
ZBTB7C	201501	broad.mit.edu	37	chr18	45895363	45895363	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggtaccttaggacaagagGagggaagaaacacagtaagc	14	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45895363	C	C	45895363	1	2	54	0	1	0	0	0	0	0	0	0	17681	1189	41	4		4	ZBTB7C	18	45895363	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	151287	45895363	32181885	3837	60431											
KIAA0427	9811	broad.mit.edu	37	chr18	46263281	46263281	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagtcacttgctgctgcActcacgttcacacagccgtg	9	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46263281	C	C	46263281	1	2	54	0	1	0	0	0	0	0	0	0	8246	174	6	5		5	KIAA0427	18	46263281	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	367918	46263281	31813967	3838	60432											
KIAA0427	9811	broad.mit.edu	37	chr18	46284078	46284078	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaaagaattggctttggtCctctgcagtagcaaggaccg	13	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46284078	T	T	46284078	1	4	54	0	1	0	0	0	0	0	0	0	8246	870	30	4		4	KIAA0427	18	46284078	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	20797	46284078	31793170	3839	60433											
SMAD4	4089	broad.mit.edu	37	chr18	48604750	48604750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcaaagaaacaccttgctgGattgaaattcacttacaccg	6	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48604750	T	T	48604750	3	4	54	1	0	0	0	0	1	0	0	0	14874	1183	41	3	1614	3	SMAD4	18	48604750	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2320672	48604750	29472498	3840	60434											
RAB27B	5874	broad.mit.edu	37	chr18	52548898	52548898	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctccaccctgctgactcaAtagacagaatgagatgggtg	10	11	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52548898	G	G	52548898	1	3	54	0	1	0	0	0	0	0	0	0	13023	116	4	5		5	RAB27B	18	52548898	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3944148	52548898	25528350	3841	60435											
TCF4	6925	broad.mit.edu	37	chr18	53114525	53114525	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggacggggtgagaccgtCtcaaaaaaaaaaaaaaaatt	10	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53114525	A	A	53114525	1	1	54	0	1	0	0	0	0	0	0	0	15817	928	32	3		3	TCF4	18	53114525	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	565627	53114525	24962723	3842	60436											
TCF4	6925	broad.mit.edu	37	chr18	53303612	53303612	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaagaaagaaagaaaaAagaaaaaaaacgatgtctca	7	3	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53303612	C	C	53303612	1	2	54	0	1	0	0	0	0	0	0	0	15817	29	1	5		5	TCF4	18	53303612	5'Flank	SNP	A	TCGA-17-Z022-01A-01W-0746-08	189087	53303612	24773636	3843	60437											
ONECUT2	9480	broad.mit.edu	37	chr18	55103907	55103907	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcggccaccctcgtcctcatCgggctcgcaggtggccacgt	13	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55103907	A	A	55103907	4	1	54	1	0	0	0	0	0	1	0	0	10963	893	31	3	961	3	ONECUT2	18	55103907	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1800295	55103907	22973341	3844	60438											
FECH	2235	broad.mit.edu	37	chr18	55222263	55222263	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgactatgtgctgacacagTgtgagccctggaacaaagcc	11	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55222263	A	A	55222263	1	1	54	0	1	0	0	0	0	0	0	0	5865	1711	59	5		5	FECH	18	55222263	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	118356	55222263	22854985	3845	60439											
NARS	4677	broad.mit.edu	37	chr18	55287671	55287671	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatatctgtatgcattccTtactttcccttttctgaaaa	3	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55287671	A	A	55287671	1	1	54	0	1	0	0	0	0	0	0	0	10264	1624	56	5		5	NARS	18	55287671	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	65408	55287671	22789577	3846	60440											
NEDD4L	23327	broad.mit.edu	37	chr18	56036959	56036959	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaggtgcgtgatgcctttgGatcaggtgaaatggaggcac	17	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56036959	C	C	56036959	1	2	54	0	1	0	0	0	0	0	0	0	10406	1189	41	4		4	NEDD4L	18	56036959	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	749288	56036959	22040289	3847	60441											
CDH20	28316	broad.mit.edu	37	chr18	59170418	59170418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcacccgttgcagaggtgCgggagaaagcccagtttgag	15	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59170418	A	A	59170418	1	1	54	0	1	0	0	0	0	0	0	0	3136	783	27	3		3	CDH20	18	59170418	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3133459	59170418	18906830	3848	60442											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60036186	60036186	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttcagacagatgcccacaGaagatgaatacatggacagg	11	9	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60036186	T	T	60036186	4	4	54	1	0	0	0	0	0	1	0	0	16407	943	33	3	1070	3	TNFRSF11A	18	60036186	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	865768	60036186	18041062	3849	60443											
CDH7	1005	broad.mit.edu	37	chr18	63477089	63477090	+	Silent	DNP	CC	AA	AA													gagcaggcctactacacgctCcgagctcaagcgctggatag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	63477090	AA	AA	63477089	2	1	54	1	0	0	0	0	0	0	0	1	3145	842	30	3		3	CDH7	18	63477089	Silent	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	3440903	63477089	14600159	3850	60444											
TMX3	54495	broad.mit.edu	37	chr18	66346899	66346899	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcacctgaaaaggccatgTggtaaacatttactgtgttg	9	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66346899	G	G	66346899	1	3	54	0	1	0	0	0	0	0	0	0	16391	1711	59	5		5	TMX3	18	66346899	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2869810	66346899	11730349	3851	60445											
DOK6	220164	broad.mit.edu	37	chr18	67084495	67084495	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctctggtacccaccattctAtccactatgtccatgagatc	5	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67084495	T	T	67084495	1	4	54	0	1	0	0	0	0	0	0	0	4741	464	16	5		5	DOK6	18	67084495	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	737596	67084495	10992753	3852	60446											
DOK6	220164	broad.mit.edu	37	chr18	67126445	67126445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	21	0	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67126445	T	T	67126445	1	4	54	0	1	0	0	0	0	0	0	0	4741	1392	48	3		3	DOK6	18	67126445	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41950	67126445	10950803	3853	60447											
NETO1	81832	broad.mit.edu	37	chr18	70425712	70425712	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtattttcttccttactttTgctaataaagaattgctgtg	6	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70425712	A	A	70425712	1	1	54	0	1	0	0	0	0	0	0	0	10434	1827	63	5		5	NETO1	18	70425712	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3299267	70425712	7651536	3854	60448											
ZNF407	55628	broad.mit.edu	37	chr18	72516059	72516059	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtgggaggattggctgagGacttattttggttgaagtta	15	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72516059	T	T	72516059	1	4	54	0	1	0	0	0	0	0	0	0	18014	1189	41	3		3	ZNF407	18	72516059	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2090347	72516059	5561189	3855	60449											
ZNF236	7776	broad.mit.edu	37	chr18	74622668	74622668	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcagtttccacctgtccaAcagctacaggattccagcac	6	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74622668	G	G	74622668	2	3	54	1	0	0	0	0	0	0	0	1	17915	40	2	5		5	ZNF236	18	74622668	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2106609	74622668	3454580	3856	60450											
ZNF236	7776	broad.mit.edu	37	chr18	74637129	74637129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgcctctgttgattcttgGctgggcttttcacaggtcag	11	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74637129	T	T	74637129	1	4	54	0	1	0	0	0	0	0	0	0	17915	1218	42	3		3	ZNF236	18	74637129	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14461	74637129	3440119	3857	60451											
MIER2	54531	broad.mit.edu	37	chr19	328043	328043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggacggctctgggggttcCtgtccctgtcctcttgcctg	14	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	328043	A	A	328043	1	1	54	0	1	0	0	0	0	0	0	0	9674	696	24	2		2	MIER2	19	328043	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08		328043	58800940	3858	60452											
APC2	10297	broad.mit.edu	37	chr19	1462091	1462091	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaccctgacctacaagtgtCagagcaactcgctggccatc	9	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1462091	T	T	1462091	4	4	54	1	0	0	0	0	0	1	0	0	766	827	29	4	1818	4	APC2	19	1462091	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1134048	1462091	57666892	3859	60453											
SGTA	6449	broad.mit.edu	37	chr19	2757423	2757423	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctatcaactctgggttcTgctgctgcatctgctgggca	11	12	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2757423	C	C	2757423	3	2	54	1	0	0	0	0	1	0	0	0	14338	1580	55	5	85	5	SGTA	19	2757423	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1295332	2757423	56371560	3860	60454											
EEF2	1938	broad.mit.edu	37	chr19	3979399	3979399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcagctcgccggcgccCgcgatgatatgctctcccga	13	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3979399	A	A	3979399	2	1	54	1	0	0	0	0	0	0	0	1	4969	639	23	1		1	EEF2	19	3979399	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1221976	3979399	55149584	3861	60455											
ANKRD24	170961	broad.mit.edu	37	chr19	4222809	4222809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtaaggactgggccacGcaggggccaggggaccatca	17	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4222809	T	T	4222809	1	4	54	0	1	0	0	0	0	0	0	0	653	1102	38	3		3	ANKRD24	19	4222809	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	243410	4222809	54906174	3862	60456											
TMIGD2	126259	broad.mit.edu	37	chr19	4292563	4292563	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttttgtgtgtacctatGggtggggtcctgttgaggtc	14	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4292563	T	T	4292563	1	4	54	0	1	0	0	0	0	0	0	0	16354	1363	47	2		2	TMIGD2	19	4292563	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	69754	4292563	54836420	3863	60457											
TMEM146	257062	broad.mit.edu	37	chr19	5770981	5770981	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacgaccccggcttccaggGgcagcagtcctccgaggacc	12	17	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5770981	C	C	5770981	3	2	54	1	0	0	0	0	1	0	0	0	16183	1232	43	4	1735	4	TMEM146	19	5770981	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1478418	5770981	53358002	3864	60458											
C3	718	broad.mit.edu	37	chr19	6697380	6697380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagggacttcctgacaCcgtcactgatgaaatgatgg	10	11	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6697380	A	A	6697380	3	1	54	1	0	0	0	0	1	0	0	0	2226	507	18	3	2304	3	C3	19	6697380	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	926399	6697380	52431603	3865	60459											
EMR1	2015	broad.mit.edu	37	chr19	6924285	6924285	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccactccaccatgaaattgGggactggacagttgaaatgt	10	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6924285	A	A	6924285	1	1	54	0	1	0	0	0	0	0	0	0	5146	1247	43	4		4	EMR1	19	6924285	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	226905	6924285	52204698	3866	60460											
INSR	3643	broad.mit.edu	37	chr19	7132341	7132341	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagctcctgggaggaagaGaggaggagaaggagggtggc	21	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7132341	A	A	7132341	1	1	54	0	1	0	0	0	0	0	0	0	7843	957	33	4		4	INSR	19	7132341	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	208056	7132341	51996642	3867	60461											
MUC16	94025	broad.mit.edu	37	chr19	8996360	8996360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtccagggcataggggcCcagctcagtgatattgtggg	16	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8996360	T	T	8996360	3	4	54	1	0	0	0	0	1	0	0	0	10067	623	22	4	2407	4	MUC16	19	8996360	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1864019	8996360	50132623	3868	60462											
MUC16	94025	broad.mit.edu	37	chr19	9002182	9002182	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcatagagctctgatggGtgaaacctgcattgagatgg	13	7	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9002182	A	A	9002182	3	1	54	1	0	0	0	0	1	0	0	0	10067	1261	44	4	3333	4	MUC16	19	9002182	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	5822	9002182	50126801	3869	60463											
MUC16	94025	broad.mit.edu	37	chr19	9015877	9015877	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctcccttgcctataataaTacaatttatttttataaaaa	2	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9015877	A	A	9015877	1	1	54	0	1	0	0	0	0	0	0	0	10067	1421	49	5		5	MUC16	19	9015877	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	13695	9015877	50113106	3870	60464											
MUC16	94025	broad.mit.edu	37	chr19	9024030	9024030	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaatttgtccactcagtatCactagatttactatgatttt	4	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9024030	G	G	9024030	1	3	54	0	1	0	0	0	0	0	0	0	10067	841	29	4		4	MUC16	19	9024030	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8153	9024030	50104953	3871	60465											
MUC16	94025	broad.mit.edu	37	chr19	9024973	9024973	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcagatggcatccactcCagtggctgccccatctttct	10	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9024973	T	T	9024973	3	4	54	1	0	0	0	0	1	0	0	0	10067	603	21	4	6910	4	MUC16	19	9024973	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	943	9024973	50104010	3872	60466											
MUC16	94025	broad.mit.edu	37	chr19	9045757	9045757	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttggactcactccttctccAtgactggttttaggtggtgt	11	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9045757	G	G	9045757	2	3	54	1	0	0	0	0	0	0	0	1	10067	214	8	5		5	MUC16	19	9045757	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	20784	9045757	50083226	3873	60467											
MUC16	94025	broad.mit.edu	37	chr19	9046257	9046258	+	Frame_Shift_Del	DEL	AC	-	-													ggtctctgatacttgaggaaAcacagttgaagcaggaaatg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9046258	-	-	9046257	7	5	54	1	0	1	0	1	0	0	0	0	10067	43	2	0	8469	0	MUC16	19	9046257	Frame_Shift_Del	DEL	AC	TCGA-17-Z022-01A-01W-0746-08	500	9046257	50082726	3874	60468											
OR1M1	125963	broad.mit.edu	37	chr19	9204564	9204564	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgccctttgtctgcatccTggcctcctatgctcgcatcc	7	18	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9204564	A	A	9204564	3	1	54	1	0	0	0	0	1	0	0	0	11062	1580	55	5	646	5	OR1M1	19	9204564	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	158307	9204564	49924419	3875	60469											
ICAM3	3385	broad.mit.edu	37	chr19	10444650	10444650	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccgttggtgctccctgaaGacgtacattaaggccagtac	10	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10444650	C	C	10444650	2	2	54	1	0	0	0	0	0	0	0	1	7551	929	33	4		4	ICAM3	19	10444650	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1240086	10444650	48684333	3876	60470											
ATG4D	84971	broad.mit.edu	37	chr19	10659647	10659647	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccgagtggaagtctgtggtCatcctggtgcccgtgcgact	15	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10659647	T	T	10659647	2	4	54	1	0	0	0	0	0	0	0	1	1103	813	29	4		4	ATG4D	19	10659647	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	214997	10659647	48469336	3877	60471											
ATG4D	84971	broad.mit.edu	37	chr19	10663550	10663550	+	Intron	SNP	C	T	T													gtggctgaccctgtctccctCttcccgccaggtcctcagct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10663550	T	T	10663550	1	4	54	0	1	0	0	0	0	0	0	0	1103	928	32	4		4	ATG4D	19	10663550	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3903	10663550	48465433	3878	60472	285	2									
ATG4D	84971	broad.mit.edu	37	chr19	10663553	10663553	+	Intron	SNP	C	T	T													gctgaccctgtctccctcttCccgccaggtcctcagctcct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10663553	T	T	10663553	1	4	54	0	1	0	0	0	0	0	0	0	1103	870	30	4		4	ATG4D	19	10663553	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3	10663553	48465430	3879	60473	285	2									
ELAVL3	1995	broad.mit.edu	37	chr19	11568959	11568959	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgagcagcgcctgcccCgtcttctgacttgggttgtt	14	11	2	2	rs144875735	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11568959	T	T	11568959	2	4	54	1	0	0	0	0	0	0	0	1	5093	639	23	4		4	ELAVL3	19	11568959	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	905406	11568959	47560024	3880	60474											
ZNF700	90592	broad.mit.edu	37	chr19	12059662	12059662	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaaagaactcacactgggGagaagccctatgaatgtagc	11	8	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12059662	T	T	12059662	4	4	54	1	0	0	0	0	0	1	0	0	18231	1175	41	3	837	3	ZNF700	19	12059662	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	490703	12059662	47069321	3881	60475											
EMR3	84658	broad.mit.edu	37	chr19	14757939	14757939	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctgggatgatacacacatCgtttggcctgcctccttgag	11	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14757939	A	A	14757939	1	1	54	0	1	0	0	0	0	0	0	0	5148	899	31	3		3	EMR3	19	14757939	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2698277	14757939	44371044	3882	60476											
EMR3	84658	broad.mit.edu	37	chr19	14772861	14772861	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacattgacagtagaaacttCcttcgacattgtaacacaca	5	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14772861	T	T	14772861	3	4	54	1	0	0	0	0	1	0	0	0	5148	855	30	4	1741	4	EMR3	19	14772861	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14922	14772861	44356122	3883	60477											
ZNF333	84449	broad.mit.edu	37	chr19	14806578	14806578	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctttgttctgaggggacatCgaaggccattcggagtgagg	15	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14806578	G	G	14806578	1	3	54	0	1	0	0	0	0	0	0	0	17976	899	31	4		4	ZNF333	19	14806578	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	33717	14806578	44322405	3884	60478											
CYP4F12	66002	broad.mit.edu	37	chr19	15782723	15782723	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaggtatgctttatataCagcacatggcacagagtagg	11	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15782723	A	A	15782723	1	1	54	0	1	0	0	0	0	0	0	0	4220	493	17	3		3	CYP4F12	19	15782723	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	976145	15782723	43346260	3885	60479											
CYP4F2	8529	broad.mit.edu	37	chr19	15990137	15990137	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaacccgttcccacctcAgacacaggccgcccttacct	5	20	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15990137	G	G	15990137	1	3	54	0	1	0	0	0	0	0	0	0	4221	203	7	5		5	CYP4F2	19	15990137	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	207414	15990137	43138846	3886	60480											
CYP4F11	57834	broad.mit.edu	37	chr19	16038214	16038214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatccctaaaggatatcccCaaccccattcacctcaatta	2	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16038214	A	A	16038214	1	1	54	0	1	0	0	0	0	0	0	0	4219	609	21	2		2	CYP4F11	19	16038214	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	48077	16038214	43090769	3887	60481											
HSH2D	84941	broad.mit.edu	37	chr19	16268408	16268408	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaccaaaagacagaaagGtccccaccaggaaggccgag	12	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16268408	A	A	16268408	3	1	54	1	0	0	0	0	1	0	0	0	7469	1261	44	4	881	4	HSH2D	19	16268408	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	230194	16268408	42860575	3888	60482											
TMEM38A	79041	broad.mit.edu	37	chr19	16797243	16797243	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttctcttcttgcagcattCttgccttgaccaatgccacc	5	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16797243	G	G	16797243	1	3	54	0	1	0	0	0	0	0	0	0	16282	928	32	4		4	TMEM38A	19	16797243	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	528835	16797243	42331740	3889	60483											
UNC13A	23025	broad.mit.edu	37	chr19	17720642	17720642	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctagaatgtggcccctcccAttcccgggcccagattccag	9	17	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17720642	T	T	17720642	1	4	54	0	1	0	0	0	0	0	0	0	17110	232	8	5		5	UNC13A	19	17720642	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	923399	17720642	41408341	3890	60484											
TM6SF2	53345	broad.mit.edu	37	chr19	19375384	19375384	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agacacccggagatgtccctCctgtctctaaaacacccaac	6	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19375384	G	G	19375384	1	3	54	0	1	0	0	0	0	0	0	0	16096	870	30	4		4	TM6SF2	19	19375384	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1654742	19375384	39753599	3891	60485											
ZNF14	7561	broad.mit.edu	37	chr19	19822426	19822426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacattgatacggtttctctCcagtgtgagtcctttcatgc	8	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19822426	A	A	19822426	3	1	54	1	0	0	0	0	1	0	0	0	17854	855	30	3	268	3	ZNF14	19	19822426	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	447042	19822426	39306557	3892	60486											
ZNF43	7594	broad.mit.edu	37	chr19	22000712	22000712	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtttggctaccatttcAtgtctcctcataggctccca	10	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22000712	G	G	22000712	2	3	54	1	0	0	0	0	0	0	0	1	18030	214	8	5		5	ZNF43	19	22000712	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2178286	22000712	37128271	3893	60487											
ZNF676	163223	broad.mit.edu	37	chr19	22363351	22363351	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcacatttgtagggcttctCttcagcatgaattgccttat	7	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22363351	G	G	22363351	3	3	54	1	0	0	0	0	1	0	0	0	18210	922	32	4	602	4	ZNF676	19	22363351	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	362639	22363351	36765632	3894	60488											
ZNF681	148213	broad.mit.edu	37	chr19	23927544	23927544	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaattattgtatgtgttgTaatgtgtgacgacaggttaa	11	2	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23927544	C	C	23927544	3	2	54	1	0	0	0	0	1	0	0	0	18215	1638	57	5	1133	5	ZNF681	19	23927544	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1564193	23927544	35201439	3895	60489											
ZNF536	9745	broad.mit.edu	37	chr19	30935770	30935770	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggtacctctcctgccTgcagagtggcttcatgaccc	9	16	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30935770	A	A	30935770	3	1	54	1	0	0	0	0	1	0	0	0	18101	1580	55	5	1303	5	ZNF536	19	30935770	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	7008226	30935770	28193213	3896	60490											
TSHZ3	57616	broad.mit.edu	37	chr19	31778493	31778493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcagagagaggacagaGggagaaagagagatgggaga	18	5	0	7			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31778493	T	T	31778493	1	4	54	0	1	0	0	0	0	0	0	0	16750	1015	35	2		2	TSHZ3	19	31778493	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	842723	31778493	27350490	3897	60491											
TSHZ3	57616	broad.mit.edu	37	chr19	31782274	31782274	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaaccccattgtaccaccGtctagcagctcctccccaga	6	17	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31782274	C	C	31782274	1	2	54	0	1	0	0	0	0	0	0	0	16750	1160	40	4		4	TSHZ3	19	31782274	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3781	31782274	27346709	3898	60492											
ANKRD27	84079	broad.mit.edu	37	chr19	33108571	33108571	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacaagaatgttagaaaaaTgatttcaacaataaaataat	5	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33108571	A	A	33108571	1	1	54	0	1	0	0	0	0	0	0	0	655	1479	51	5		5	ANKRD27	19	33108571	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1326297	33108571	26020412	3899	60493											
RHPN2	85415	broad.mit.edu	37	chr19	33503470	33503470	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatccacccgcgattctgtTaagaccacaagcgtgcaata	7	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33503470	C	C	33503470	1	2	54	0	1	0	0	0	0	0	0	0	13460	1769	61	5		5	RHPN2	19	33503470	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	394899	33503470	25625513	3900	60494											
RHPN2	85415	broad.mit.edu	37	chr19	33535116	33535116	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtttagggaacagatgacTaggactcaggagaggcaggg	17	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33535116	C	C	33535116	1	2	54	0	1	0	0	0	0	0	0	0	13460	1537	53	5		5	RHPN2	19	33535116	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	31646	33535116	25593867	3901	60495											
CHST8	64377	broad.mit.edu	37	chr19	34263888	34263888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcccaactctcggccctgCaaaggcagcgcacctacgac	9	18	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34263888	A	A	34263888	3	1	54	1	0	0	0	0	1	0	0	0	3441	711	25	3	1205	3	CHST8	19	34263888	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	728772	34263888	24865095	3902	60496											
SCN1B	6324	broad.mit.edu	37	chr19	35523499	35523499	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccgtgtatgggatgaccttCaaaattctttgcatctcctg	9	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35523499	A	A	35523499	3	1	54	1	0	0	0	0	1	0	0	0	14028	825	29	3	114	3	SCN1B	19	35523499	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1259611	35523499	23605484	3903	60497											
MAG	4099	broad.mit.edu	37	chr19	35804104	35804104	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttatttgggactgaactCaggagctctgagggtgcaaa	13	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35804104	G	G	35804104	1	3	54	0	1	0	0	0	0	0	0	0	9250	841	29	4		4	MAG	19	35804104	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	280605	35804104	23324879	3904	60498											
ATP4A	495	broad.mit.edu	37	chr19	36046325	36046325	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcccgcctgcccacccTcatcagcagggctcaccagc	9	20	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36046325	A	A	36046325	1	1	54	0	1	0	0	0	0	0	0	0	1149	1566	54	5		5	ATP4A	19	36046325	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	242221	36046325	23082658	3905	60499											
ZBTB32	27033	broad.mit.edu	37	chr19	36205630	36205630	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgatactctgatcacCgtagggagccaggagttccc	11	12	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36205630	A	A	36205630	2	1	54	1	0	0	0	0	0	0	0	1	17661	639	23	1		1	ZBTB32	19	36205630	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	159305	36205630	22923353	3906	60500											
MLL4	9757	broad.mit.edu	37	chr19	36211923	36211923	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaacccccaaaggtggaGgtctcacctgtcctgcgacc	9	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36211923	A	A	36211923	2	1	54	1	0	0	0	0	0	0	0	1	9716	991	35	4		4	MLL4	19	36211923	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6293	36211923	22917060	3907	60501											
NPHS1	4868	broad.mit.edu	37	chr19	36333185	36333185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccacctggggggcaactGggaggggatgggcagtcaac	18	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36333185	T	T	36333185	1	4	54	0	1	0	0	0	0	0	0	0	10677	1363	47	2		2	NPHS1	19	36333185	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	121262	36333185	22795798	3908	60502											
KIRREL2	84063	broad.mit.edu	37	chr19	36355656	36355656	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctcccttcactgttgggaGaggcggggctcccttcattg	14	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36355656	C	C	36355656	1	2	54	0	1	0	0	0	0	0	0	0	8396	957	33	4		4	KIRREL2	19	36355656	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22471	36355656	22773327	3909	60503											
LRFN3	79414	broad.mit.edu	37	chr19	36430220	36430220	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaccagcccttctgccctCagcccactgtgaccttctct	6	18	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36430220	T	T	36430220	1	4	54	0	1	0	0	0	0	0	0	0	9026	841	29	4		4	LRFN3	19	36430220	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	74564	36430220	22698763	3910	60504											
CLIP3	25999	broad.mit.edu	37	chr19	36510059	36510059	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccacacccctcttgggcccGaggtcggactaaccctgctt	10	17	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36510059	A	A	36510059	1	1	54	0	1	0	0	0	0	0	0	0	3566	1073	37	4		4	CLIP3	19	36510059	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	79839	36510059	22618924	3911	60505											
CLIP3	25999	broad.mit.edu	37	chr19	36517248	36517248	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctcggggctcatctcttAacttgcaggtcccagagcct	9	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36517248	G	G	36517248	1	3	54	0	1	0	0	0	0	0	0	0	3566	377	13	5		5	CLIP3	19	36517248	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7189	36517248	22611735	3912	60506											
ZNF566	84924	broad.mit.edu	37	chr19	36964265	36964265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgctgtaattctccaaCatcacatctctgtataaatc	5	10	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36964265	A	A	36964265	3	1	54	1	0	0	0	0	1	0	0	0	18124	478	17	3	1166	3	ZNF566	19	36964265	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	447017	36964265	22164718	3913	60507											
ZNF585A	199704	broad.mit.edu	37	chr19	37646123	37646123	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggtcccgatctcctgacCtcatgatctgcccgcctcgg	10	17	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37646123	T	T	37646123	1	4	54	0	1	0	0	0	0	0	0	0	18144	696	24	4		4	ZNF585A	19	37646123	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	681858	37646123	21482860	3914	60508											
SIPA1L3	23094	broad.mit.edu	37	chr19	38665132	38665132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacctcttaccccaactGcgtgatctctctcaggcccc	5	20	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38665132	T	T	38665132	1	4	54	0	1	0	0	0	0	0	0	0	14444	1334	46	3		3	SIPA1L3	19	38665132	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1019009	38665132	20463851	3915	60509											
RASGRP4	115727	broad.mit.edu	37	chr19	38911481	38911481	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggattctctgaggaatGttttttgagggggaagcagg	17	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38911481	A	A	38911481	1	1	54	0	1	0	0	0	0	0	0	0	13185	1392	48	4		4	RASGRP4	19	38911481	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	246349	38911481	20217502	3916	60510											
RYR1	6261	broad.mit.edu	37	chr19	38993141	38993141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgtcctcaccctgcgCcctaggccactttcagcacc	7	19	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38993141	A	A	38993141	1	1	54	0	1	0	0	0	0	0	0	0	13879	754	26	3		3	RYR1	19	38993141	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	81660	38993141	20135842	3917	60511											
RYR1	6261	broad.mit.edu	37	chr19	38995653	38995653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccaacagtgtgatcatcCcggagaagctggactccttc	9	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38995653	A	A	38995653	3	1	54	1	0	0	0	0	1	0	0	0	13879	623	22	2	8448	2	RYR1	19	38995653	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2512	38995653	20133330	3918	60512											
RYR1	6261	broad.mit.edu	37	chr19	39013886	39013886	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgaggagcagaactttgtGgtccagaatgagatcaacaa	12	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39013886	T	T	39013886	2	4	54	1	0	0	0	0	0	0	0	1	13879	1335	47	2		2	RYR1	19	39013886	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	18233	39013886	20115097	3919	60513											
MAP4K1	11184	broad.mit.edu	37	chr19	39106849	39106849	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctaaccttggtagatgtccTggagagaaccagccccacag	10	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39106849	A	A	39106849	3	1	54	1	0	0	0	0	1	0	0	0	9351	1580	55	5	2380	5	MAP4K1	19	39106849	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	92963	39106849	20022134	3920	60514											
PAK4	10298	broad.mit.edu	37	chr19	39665645	39665645	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacctggtgggggacgagctCtgggtggtcatggagttcct	17	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39665645	G	G	39665645	2	3	54	1	0	0	0	0	0	0	0	1	11497	900	32	4		4	PAK4	19	39665645	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	558796	39665645	19463338	3921	60515											
AKT2	208	broad.mit.edu	37	chr19	40771226	40771226	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggacagctcagggcagcagGacatgcaggaggcaccgtgg	18	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40771226	A	A	40771226	1	1	54	0	1	0	0	0	0	0	0	0	480	1189	41	4		4	AKT2	19	40771226	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1105581	40771226	18357757	3922	60516											
PLD3	23646	broad.mit.edu	37	chr19	40863852	40863852	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acattgttcaaagaatgaaaGtgtggcttagagaagggaac	12	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40863852	C	C	40863852	1	2	54	0	1	0	0	0	0	0	0	0	12142	1044	36	4		4	PLD3	19	40863852	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	92626	40863852	18265131	3923	60517											
CYP2F1	1572	broad.mit.edu	37	chr19	41970492	41970492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcaatatcacagggagGtgtacaccttctgcgatatt	10	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41970492	T	T	41970492	1	4	54	0	1	0	0	0	0	0	0	0	4204	1276	44	3		3	CYP2F1	19	41970492	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1106640	41970492	17158491	3924	60518											
CYP2F1	1572	broad.mit.edu	37	chr19	42010981	42010981	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctccctctccgcccccggGatatcacaaaccatatcaca	4	18	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42010981	A	A	42010981	1	1	54	0	1	0	0	0	0	0	0	0	4204	1189	41	4		4	CYP2F1	19	42010981	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	40489	42010981	17118002	3925	60519											
CEACAM21	90273	broad.mit.edu	37	chr19	42090355	42090355	+	Intron	DEL	G	-	-													tcatcagcattgagttggcaGcaagggcctgccctttacga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42090355	-	-	42090355	6	5	54	0	1	1	0	1	0	0	0	0	3222	986	34	0		0	CEACAM21	19	42090355	Intron	DEL	G	TCGA-17-Z022-01A-01W-0746-08	79374	42090355	17038628	3926	60520											
ARHGEF1	9138	broad.mit.edu	37	chr19	42392153	42392153	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccctgcagagcccagggaGatggaagacttcgcccgagg	15	12	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42392153	A	A	42392153	1	1	54	0	1	0	0	0	0	0	0	0	895	933	33	4		4	ARHGEF1	19	42392153	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	301798	42392153	16736830	3927	60521											
ATP1A3	478	broad.mit.edu	37	chr19	42473061	42473061	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccaccaccttcctctgctCgtatgtctgcaggagcggtg	10	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42473061	G	G	42473061	3	3	54	1	0	0	0	0	1	0	0	0	1134	893	31	4	362	4	ATP1A3	19	42473061	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	80908	42473061	16655922	3928	60522											
ATP1A3	478	broad.mit.edu	37	chr19	42479787	42479787	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctggccaactcaccctcctCcacccctgtgacgatggagg	9	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42479787	A	A	42479787	4	1	54	1	0	0	0	0	0	1	0	0	1134	864	30	3	816	3	ATP1A3	19	42479787	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6726	42479787	16649196	3929	60523											
ATP1A3	478	broad.mit.edu	37	chr19	42489244	42489244	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcaatctcgatggcgatGggcgtcttgcccacctccag	11	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42489244	T	T	42489244	2	4	54	1	0	0	0	0	0	0	0	1	1134	1335	47	2		2	ATP1A3	19	42489244	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9457	42489244	16639739	3930	60524											
CEACAM8	1088	broad.mit.edu	37	chr19	43097418	43097418	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtcaggtccatggggagGgcacggggtgcctggctgag	21	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43097418	A	A	43097418	1	1	54	0	1	0	0	0	0	0	0	0	3228	1247	43	4		4	CEACAM8	19	43097418	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	608174	43097418	16031565	3931	60525											
PSG8	440533	broad.mit.edu	37	chr19	43310255	43310255	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctatttctccacatcctctCctgcacctgttgtttcctga	4	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43310255	G	G	43310255	1	3	54	0	1	0	0	0	0	0	0	0	12767	870	30	4		4	PSG8	19	43310255	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	212837	43310255	15818728	3932	60526											
PSG1	5669	broad.mit.edu	37	chr19	43359903	43359903	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctggggcaggagcacttctCaggctcatgggtggggttag	17	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43359903	G	G	43359903	1	3	54	0	1	0	0	0	0	0	0	0	12759	841	29	4		4	PSG1	19	43359903	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	49648	43359903	15769080	3933	60527											
PSG1	5669	broad.mit.edu	37	chr19	43362240	43362240	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttagaggcatctctcctgCttggtgtgctgggctctcct	11	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43362240	T	T	43362240	1	4	54	0	1	0	0	0	0	0	0	0	12759	812	28	4		4	PSG1	19	43362240	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2337	43362240	15766743	3934	60528											
PSG1	5669	broad.mit.edu	37	chr19	43383224	43383224	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caattccggtccaatacgacTttcctgttttgacccctgtc	6	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43383224	G	G	43383224	1	3	54	0	1	0	0	0	0	0	0	0	12759	1624	56	5		5	PSG1	19	43383224	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	20984	43383224	15745759	3935	60529											
PSG1	5669	broad.mit.edu	37	chr19	43383545	43383545	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaacttctgatctcatgatCcacccacctcagactcccaa	4	16	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43383545	G	G	43383545	1	3	54	0	1	0	0	0	0	0	0	0	12759	870	30	4		4	PSG1	19	43383545	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	321	43383545	15745438	3936	60530											
PSG6	5675	broad.mit.edu	37	chr19	43519727	43519727	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccaagtctcccatgacaaGagcatcccctctccttatat	4	17	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43519727	T	T	43519727	1	4	54	0	1	0	0	0	0	0	0	0	12765	957	33	3		3	PSG6	19	43519727	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	136182	43519727	15609256	3937	60531											
PSG6	5675	broad.mit.edu	37	chr19	43571276	43571276	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctctttaactctaatgggtGactggttggaggattcctca	10	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43571276	A	A	43571276	1	1	54	0	1	0	0	0	0	0	0	0	12765	1305	45	4		4	PSG6	19	43571276	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	51549	43571276	15557707	3938	60532											
PSG6	5675	broad.mit.edu	37	chr19	43601001	43601001	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgttcactgaactggagGagtctaagatattcacctgt	10	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43601001	T	T	43601001	1	4	54	0	1	0	0	0	0	0	0	0	12765	1189	41	3		3	PSG6	19	43601001	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	29725	43601001	15527982	3939	60533											
PLAUR	5329	broad.mit.edu	37	chr19	44161169	44161169	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagtggcaccatcttggctCactgcaacctccactccccg	8	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44161169	T	T	44161169	1	4	54	0	1	0	0	0	0	0	0	0	12118	841	29	4		4	PLAUR	19	44161169	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	560168	44161169	14967814	3940	60534											
PLAUR	5329	broad.mit.edu	37	chr19	44169317	44169317	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgagttggggatggagctGagctagagatgggttgggtt	19	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44169317	A	A	44169317	1	1	54	0	1	0	0	0	0	0	0	0	12118	1305	45	4		4	PLAUR	19	44169317	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8148	44169317	14959666	3941	60535											
ZNF226	7769	broad.mit.edu	37	chr19	44679334	44679334	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttgtaaactgtgagcactAcaaaatgtttttccttattg	8	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44679334	G	G	44679334	1	3	54	0	1	0	0	0	0	0	0	0	17906	406	14	5		5	ZNF226	19	44679334	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	510017	44679334	14449649	3942	60536											
DMPK	1760	broad.mit.edu	37	chr19	46278330	46278330	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgagcagcagtcgtcagGgcgggcccctcactgctttt	13	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46278330	A	A	46278330	1	1	54	0	1	0	0	0	0	0	0	0	4624	1247	43	4		4	DMPK	19	46278330	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1598996	46278330	12850653	3943	60537											
NOVA2	4858	broad.mit.edu	37	chr19	46475645	46475645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcacacacactggaccCctttcctctgatctacacgg	7	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46475645	A	A	46475645	1	1	54	0	1	0	0	0	0	0	0	0	10650	638	22	2		2	NOVA2	19	46475645	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	197315	46475645	12653338	3944	60538											
CYTH2	9266	broad.mit.edu	37	chr19	48978939	48978939	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcagccctggctgtacatGagatttgcctgggcaactcg	11	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48978939	C	C	48978939	1	2	54	0	1	0	0	0	0	0	0	0	4237	1305	45	4		4	CYTH2	19	48978939	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2503294	48978939	10150044	3945	60539											
LMTK3	114783	broad.mit.edu	37	chr19	49005404	49005404	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcttcctcctcctcccctGacccctccccctcccctggt	4	24	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49005404	T	T	49005404	1	4	54	0	1	0	0	0	0	0	0	0	8934	1305	45	3		3	LMTK3	19	49005404	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	26465	49005404	10123579	3946	60540											
GYS1	2997	broad.mit.edu	37	chr19	49477529	49477529	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaaggtgacagccacggAcaaactcctcatagtccaca	7	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49477529	G	G	49477529	3	3	54	1	0	0	0	0	1	0	0	0	6977	275	10	5	743	5	GYS1	19	49477529	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	472125	49477529	9651454	3947	60541											
TSKS	60385	broad.mit.edu	37	chr19	50247792	50247792	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaccctgccctcccctctCtgctctgactggcctcactt	5	21	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50247792	G	G	50247792	1	3	54	0	1	0	0	0	0	0	0	0	16751	928	32	4		4	TSKS	19	50247792	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	770263	50247792	8881191	3948	60542											
AP2A1	160	broad.mit.edu	37	chr19	50309861	50309861	+	Intron	DEL	C	-	-													tggcccctttatccttccttCcttctatctcccttgggtcc					rs35344605		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50309861	-	-	50309861	6	5	54	0	1	1	0	1	0	0	0	0	741	870	30	0		0	AP2A1	19	50309861	Intron	DEL	C	TCGA-17-Z022-01A-01W-0746-08	62069	50309861	8819122	3949	60543											
PNKP	11284	broad.mit.edu	37	chr19	50369631	50369631	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcccatccccaggccttgCtggcccttgcagaggcactg	10	16	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50369631	T	T	50369631	1	4	54	0	1	0	0	0	0	0	0	0	12242	812	28	4		4	PNKP	19	50369631	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	59770	50369631	8759352	3950	60544											
SIGLEC10	89790	broad.mit.edu	37	chr19	51919746	51919746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccagggctcacgtgtgtGgaccagacgccattcccatc	12	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51919746	T	T	51919746	1	4	54	0	1	0	0	0	0	0	0	0	14419	1363	47	2		2	SIGLEC10	19	51919746	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1550115	51919746	7209237	3951	60545											
CEACAM18	729767	broad.mit.edu	37	chr19	51983727	51983727	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatacagctggtactggggtGcaaacgacagcgcaggaaac	13	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51983727	C	C	51983727	3	2	54	1	0	0	0	0	1	0	0	0	3219	1319	46	4	386	4	CEACAM18	19	51983727	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	63981	51983727	7145256	3952	60546											
SIGLEC6	946	broad.mit.edu	37	chr19	52033844	52033844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggggctctcctctttGgcaaccaggtccccaacttt	10	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52033844	T	T	52033844	1	4	54	0	1	0	0	0	0	0	0	0	14425	1363	47	2		2	SIGLEC6	19	52033844	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	50117	52033844	7095139	3953	60547											
ZNF841	284371	broad.mit.edu	37	chr19	52570211	52570211	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccctcttgtatggactatCtgatgtactgttagtagtga	9	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52570211	T	T	52570211	2	4	54	1	0	0	0	0	0	0	0	1	18318	912	32	4		4	ZNF841	19	52570211	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	536367	52570211	6558772	3954	60548											
ZNF836	162962	broad.mit.edu	37	chr19	52671122	52671122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagtggagcctcttccCaagttaatgtcactgggtcg	11	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52671122	A	A	52671122	1	1	54	0	1	0	0	0	0	0	0	0	18316	609	21	2		2	ZNF836	19	52671122	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	100911	52671122	6457861	3955	60549											
PPP2R1A	5518	broad.mit.edu	37	chr19	52709088	52709088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtggagagtgggggaGcaagtgggcggatggaagaa	21	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52709088	T	T	52709088	1	4	54	0	1	0	0	0	0	0	0	0	12483	986	34	3		3	PPP2R1A	19	52709088	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	37966	52709088	6419895	3956	60550											
PPP2R1A	5518	broad.mit.edu	37	chr19	52712022	52712022	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggcctcccaaagttctggGattacaggcgtgagccaccg	12	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52712022	T	T	52712022	1	4	54	0	1	0	0	0	0	0	0	0	12483	1189	41	3		3	PPP2R1A	19	52712022	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2934	52712022	6416961	3957	60551											
ZNF880	400713	broad.mit.edu	37	chr19	52887268	52887268	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaattccttagtttcaccActtcaaaaaatttattctag	2	9	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52887268	G	G	52887268	2	3	54	1	0	0	0	0	0	0	0	1	18326	146	6	5		5	ZNF880	19	52887268	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	175246	52887268	6241715	3958	60552											
ZNF578	147660	broad.mit.edu	37	chr19	53014749	53014749	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactggaataaaaccttacaAgtgtaatgagtgtggcaaga	10	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53014749	T	T	53014749	3	4	54	1	0	0	0	0	1	0	0	0	18137	72	3	5	1125	5	ZNF578	19	53014749	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	127481	53014749	6114234	3959	60553											
ZNF28	7576	broad.mit.edu	37	chr19	53302006	53302006	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgatatctgaaaaatctgtCacatttattacacttgtaag	5	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53302006	A	A	53302006	1	1	54	0	1	0	0	0	0	0	0	0	17939	841	29	3		3	ZNF28	19	53302006	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	287257	53302006	5826977	3960	60554											
ZNF28	7576	broad.mit.edu	37	chr19	53302291	53302291	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatgttttttctccagtatGaattctcctgtctttcaagc	6	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53302291	A	A	53302291	1	1	54	0	1	0	0	0	0	0	0	0	17939	1305	45	4		4	ZNF28	19	53302291	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	285	53302291	5826692	3961	60555											
NLRP12	91662	broad.mit.edu	37	chr19	54301321	54301321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttaagtcgggtagcacCcccaaatcagaataagttca	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54301321	A	A	54301321	1	1	54	0	1	0	0	0	0	0	0	0	10569	638	22	2		2	NLRP12	19	54301321	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	999030	54301321	4827662	3962	60556											
NLRP12	91662	broad.mit.edu	37	chr19	54313961	54313961	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagcagctccgtgggccGtttctcctcccagcagaggc	12	14	1	2	rs140585311	byFrequency	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54313961	T	T	54313961	2	4	54	1	0	0	0	0	0	0	0	1	10569	1144	40	3		3	NLRP12	19	54313961	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12640	54313961	4815022	3963	60557											
OSCAR	126014	broad.mit.edu	37	chr19	54600290	54600290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgccagctcggaggacaCatcccggaagagaaggggag	15	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54600290	A	A	54600290	3	1	54	1	0	0	0	0	1	0	0	0	11379	478	17	3	765	3	OSCAR	19	54600290	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	286329	54600290	4528693	3964	60558											
LILRA3	11026	broad.mit.edu	37	chr19	54804266	54804266	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggacacttggaggctcGgtccttcttctcatggggtt	14	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54804266	T	T	54804266	1	4	54	0	1	0	0	0	0	0	0	0	8858	1131	39	1		1	LILRA3	19	54804266	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	203976	54804266	4324717	3965	60559											
LAIR1	3903	broad.mit.edu	37	chr19	54867942	54867942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggactgggtggaggtccaGgagtcattcccaggggcctc	17	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54867942	T	T	54867942	1	4	54	0	1	0	0	0	0	0	0	0	8674	1015	35	2		2	LAIR1	19	54867942	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	63676	54867942	4261041	3966	60560											
LILRB1	10859	broad.mit.edu	37	chr19	55142738	55142738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggctgagtctgggcccCaggacccacgtgcaggcagg	16	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55142738	A	A	55142738	2	1	54	1	0	0	0	0	0	0	0	1	8862	581	21	2		2	LILRB1	19	55142738	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	274796	55142738	3986245	3967	60561											
LILRB4	11006	broad.mit.edu	37	chr19	55178383	55178383	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctgggacctcatgggCctcctcccgggtccccttcc	10	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55178383	T	T	55178383	1	4	54	0	1	0	0	0	0	0	0	0	8865	754	26	4		4	LILRB4	19	55178383	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	35645	55178383	3950600	3968	60562											
LILRB4	11006	broad.mit.edu	37	chr19	55179316	55179316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccctctcactctccccCgctgcaggctgctgcatctg	7	20	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55179316	A	A	55179316	1	1	54	0	1	0	0	0	0	0	0	0	8865	667	23	1		1	LILRB4	19	55179316	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	933	55179316	3949667	3969	60563											
KIR3DL1	3811	broad.mit.edu	37	chr19	55361985	55361985	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgagtcctggaagggaataGagggagggagagtggggatg	22	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55361985	C	C	55361985	1	2	54	0	1	0	0	0	0	0	0	0	8391	957	33	4		4	KIR3DL1	19	55361985	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	182669	55361985	3766998	3970	60564											
KIR3DL1	3811	broad.mit.edu	37	chr19	55362008	55362008	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagggagagtggggatggaGatctcggcctagaggtaaag	20	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55362008	T	T	55362008	1	4	54	0	1	0	0	0	0	0	0	0	8391	957	33	3		3	KIR3DL1	19	55362008	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23	55362008	3766975	3971	60565											
NLRP2	55655	broad.mit.edu	37	chr19	55492980	55492980	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcacatgagtttgtatttTgtagcgtttacagaaacgaa	8	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55492980	A	A	55492980	1	1	54	0	1	0	0	0	0	0	0	0	10572	1827	63	5		5	NLRP2	19	55492980	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	130972	55492980	3636003	3972	60566											
GP6	51206	broad.mit.edu	37	chr19	55539168	55539168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgacactgtagggttaCgtcccctcctgacgacaccg	10	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55539168	A	A	55539168	3	1	54	1	0	0	0	0	1	0	0	0	6649	536	19	3	1494	3	GP6	19	55539168	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	46188	55539168	3589815	3973	60567											
PTPRH	5794	broad.mit.edu	37	chr19	55713710	55713710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaaaccagcacaggagGgaaaatcagttgtagtttct	11	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55713710	A	A	55713710	1	1	54	0	1	0	0	0	0	0	0	0	12911	1247	43	4		4	PTPRH	19	55713710	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	174542	55713710	3415273	3974	60568											
NLRP9	338321	broad.mit.edu	37	chr19	56243816	56243816	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaggatcgtctttgggtcGtttgagcaaataaaacatgg	12	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56243816	T	T	56243816	2	4	54	1	0	0	0	0	0	0	0	1	10579	1153	40	3		3	NLRP9	19	56243816	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	530106	56243816	2885167	3975	60569											
NLRP9	338321	broad.mit.edu	37	chr19	56249728	56249728	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagccaaaatccgaaaaaaAagattctgccatatcgcccc	5	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56249728	T	T	56249728	3	4	54	1	0	0	0	0	1	0	0	0	10579	14	1	5	2998	5	NLRP9	19	56249728	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	5912	56249728	2879255	3976	60570											
NLRP11	204801	broad.mit.edu	37	chr19	56321105	56321105	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcgtgcagcaatctacctCtttcaagaacgtttttacat	7	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56321105	G	G	56321105	3	3	54	1	0	0	0	0	1	0	0	0	10568	922	32	4	2262	4	NLRP11	19	56321105	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	71377	56321105	2807878	3977	60571											
NLRP4	147945	broad.mit.edu	37	chr19	56379305	56379305	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagttcaaacctgggcctaTtgatgacagtctgctcattg	10	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56379305	C	C	56379305	1	2	54	0	1	0	0	0	0	0	0	0	10574	1508	52	5		5	NLRP4	19	56379305	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	58200	56379305	2749678	3978	60572											
NLRP4	147945	broad.mit.edu	37	chr19	56390126	56390126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctccaccctgaggctgGggccgcatcttaccatgtgt	10	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56390126	T	T	56390126	1	4	54	0	1	0	0	0	0	0	0	0	10574	1247	43	2		2	NLRP4	19	56390126	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	10821	56390126	2738857	3979	60573											
NLRP4	147945	broad.mit.edu	37	chr19	56390279	56390279	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaccacacaggggtggTtgtactctgtgaggccctga	14	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56390279	C	C	56390279	3	2	54	1	0	0	0	0	1	0	0	0	10574	1725	60	5	2846	5	NLRP4	19	56390279	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	153	56390279	2738704	3980	60574											
NLRP5	126206	broad.mit.edu	37	chr19	56539859	56539859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgagtccgctgaggcatgtCctgtggtccctctatggtga	13	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56539859	A	A	56539859	3	1	54	1	0	0	0	0	1	0	0	0	10575	855	30	3	2286	3	NLRP5	19	56539859	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	149580	56539859	2589124	3981	60575											
NLRP5	126206	broad.mit.edu	37	chr19	56552469	56552469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggctgatgtgagtctggCttgctcccctgcaaggactt	13	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56552469	A	A	56552469	1	1	54	0	1	0	0	0	0	0	0	0	10575	812	28	3		3	NLRP5	19	56552469	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	12610	56552469	2576514	3982	60576											
ZNF470	388566	broad.mit.edu	37	chr19	57089612	57089612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggcattcaggcagagGgcatccttgatttgtcatca	13	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57089612	T	T	57089612	3	4	54	1	0	0	0	0	1	0	0	0	18056	1223	43	2	1829	2	ZNF470	19	57089612	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	537143	57089612	2039371	3983	60577											
ZNF547	284306	broad.mit.edu	37	chr19	57883090	57883090	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagtagaaaataaatagaGaacttaagtaaatacagttt	6	2	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57883090	T	T	57883090	1	4	54	0	1	0	0	0	0	0	0	0	18106	957	33	3		3	ZNF547	19	57883090	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	793478	57883090	1245893	3984	60578											
ZNF548	147694	broad.mit.edu	37	chr19	57911286	57911286	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgggtagtaatgttatatAaattccacatttttatgcaa	6	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57911286	T	T	57911286	1	4	54	0	1	0	0	0	0	0	0	0	18107	377	13	5		5	ZNF548	19	57911286	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	28196	57911286	1217697	3985	60579											
ZSCAN4	201516	broad.mit.edu	37	chr19	58189944	58189944	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggtctttaagtatctcTgtcacttattagctcaccag	6	11	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58189944	A	A	58189944	3	1	54	1	0	0	0	0	1	0	0	0	18366	1580	55	5	983	5	ZSCAN4	19	58189944	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	278658	58189944	939039	3986	60580											
ZNF671	79891	broad.mit.edu	37	chr19	58233677	58233699	+	Splice_Site	DEL	CACTCACCAGGTCTAAGTCCCCT	-	-													tcgtgcccttccccgatgtcCactcaccaggtctaagtccc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58233699	-	-	58233677	8	5	54	1	0	1	0	1	0	0	1	0	18205	609	21	0		0	ZNF671	19	58233677	Splice_Site	DEL	CACTCACCAGGTCTAAGTCCCCT	TCGA-17-Z022-01A-01W-0746-08	43733	58233677	895306	3987	60581											
ZNF418	147686	broad.mit.edu	37	chr19	58441835	58441835	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagttctccagcatcacgtCatggtaaaggcatctctgaa	8	12	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58441835	A	A	58441835	3	1	54	1	0	0	0	0	1	0	0	0	18022	826	29	3	1944	3	ZNF418	19	58441835	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	208158	58441835	687148	3988	60582											
ZNF606	80095	broad.mit.edu	37	chr19	58510765	58510765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttagctgagtgaataaCcctggaaaagggtctgggag	13	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58510765	A	A	58510765	1	1	54	0	1	0	0	0	0	0	0	0	18159	522	18	3		3	ZNF606	19	58510765	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68930	58510765	618218	3989	60583											
ZNF135	7694	broad.mit.edu	37	chr19	58573180	58573180	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaagcaaatgcctgggGctgtatgtcttgggctttaa	11	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58573180	C	C	58573180	1	2	54	0	1	0	0	0	0	0	0	0	17851	1218	42	4		4	ZNF135	19	58573180	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	62415	58573180	555803	3990	60584											
MZF1	7593	broad.mit.edu	37	chr19	59080680	59080680	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagcttcctcatgccacaGggccctggggtgctccctcc	10	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59080680	A	A	59080680	2	1	54	1	0	0	0	0	0	0	0	1	10202	991	35	4		4	MZF1	19	59080680	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	507500	59080680	48303	3991	60585											
ANGPT4	51378	broad.mit.edu	37	chr20	870668	870668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcccagcatccacccccCagggctcatagcttggagag	10	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	870668	A	A	870668	1	1	54	0	1	0	0	0	0	0	0	0	612	609	21	2		2	ANGPT4	20	870668	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08		870668	62154852	3992	60586											
SDCBP2	27111	broad.mit.edu	37	chr20	1290951	1290951	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagccatcccatggtcaccCtcctggacacgcccccctca	6	20	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1290951	A	A	1290951	1	1	54	0	1	0	0	0	0	0	0	0	14069	696	24	2		2	SDCBP2	20	1290951	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	420283	1290951	61734569	3993	60587											
SIRPB1	10326	broad.mit.edu	37	chr20	1551840	1551840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagacagatcacagggagGgctaaataacgtagctccca	10	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1551840	T	T	1551840	1	4	54	0	1	0	0	0	0	0	0	0	14446	1247	43	2		2	SIRPB1	20	1551840	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	260889	1551840	61473680	3994	60588											
PDYN	5173	broad.mit.edu	37	chr20	1961359	1961359	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgagcttctcctccagGctcttgctcagagtgttctc	8	16	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1961359	A	A	1961359	2	1	54	1	0	0	0	0	0	0	0	1	11793	1194	42	4		4	PDYN	20	1961359	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	409519	1961359	61064161	3995	60589											
TGM3	7053	broad.mit.edu	37	chr20	2320397	2320397	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccccttcttcatcctcagTgacatcacccccttcactca	2	20	6	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2320397	A	A	2320397	1	1	54	0	1	0	0	0	0	0	0	0	15954	1711	59	5		5	TGM3	20	2320397	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	359038	2320397	60705123	3996	60590											
ZNF343	79175	broad.mit.edu	37	chr20	2464419	2464419	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtatcctctggtgttttctGagggttgacttatcacaaaa	9	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2464419	A	A	2464419	2	1	54	1	0	0	0	0	0	0	0	1	17984	1277	45	4		4	ZNF343	20	2464419	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	144022	2464419	60561101	3997	60591											
TMC2	117532	broad.mit.edu	37	chr20	2575566	2575566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctatggcttactttatGgtgggggtcagcgtgttcgg	15	8	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2575566	T	T	2575566	3	4	54	1	0	0	0	0	1	0	0	0	16108	1348	47	2	1063	2	TMC2	20	2575566	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	111147	2575566	60449954	3998	60592											
C20orf194	25943	broad.mit.edu	37	chr20	3285094	3285094	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaacacctaccccatcaTagaaggaaatggaattcatg	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3285094	C	C	3285094	3	2	54	1	0	0	0	0	1	0	0	0	2121	1406	49	5	1826	5	C20orf194	20	3285094	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	709528	3285094	59740426	3999	60593											
CDC25B	994	broad.mit.edu	37	chr20	3782492	3782492	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgaatttggaggcatgggGtccatcctactctccagtgg	12	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3782492	A	A	3782492	1	1	54	0	1	0	0	0	0	0	0	0	3093	1276	44	4		4	CDC25B	20	3782492	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	497398	3782492	59243028	4000	60594											
SLC23A2	9962	broad.mit.edu	37	chr20	4843540	4843540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccgcactgtatcacgCggcggctgccgacctgcaga	12	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4843540	A	A	4843540	3	1	54	1	0	0	0	0	1	0	0	0	14577	768	27	3	598	3	SLC23A2	20	4843540	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1061048	4843540	58181980	4001	60595											
CDS2	8760	broad.mit.edu	37	chr20	5163641	5163641	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagttttctatttggtattGattgttctttgaagttactt	8	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5163641	T	T	5163641	1	4	54	0	1	0	0	0	0	0	0	0	3208	1305	45	3		3	CDS2	20	5163641	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	320101	5163641	57861879	4002	60596											
PLCB1	23236	broad.mit.edu	37	chr20	8189112	8189112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacatgcttggttcattcCaccactaggttattgctgct	8	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8189112	A	A	8189112	1	1	54	0	1	0	0	0	0	0	0	0	12122	609	21	2		2	PLCB1	20	8189112	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3025471	8189112	54836408	4003	60597											
PLCB1	23236	broad.mit.edu	37	chr20	8436466	8436466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagccactcactccccagCgtcacacaaatggatgctta	7	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8436466	A	A	8436466	1	1	54	0	1	0	0	0	0	0	0	0	12122	783	27	3		3	PLCB1	20	8436466	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	247354	8436466	54589054	4004	60598											
PLCB4	5332	broad.mit.edu	37	chr20	9166482	9166482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaatgctctgccttccccCactcatccacatggctaaat	5	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9166482	A	A	9166482	1	1	54	0	1	0	0	0	0	0	0	0	12125	609	21	2		2	PLCB4	20	9166482	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	730016	9166482	53859038	4005	60599											
PLCB4	5332	broad.mit.edu	37	chr20	9284866	9284866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaactcaagaatgattaagGggtgtatgtatgtgtgtgtg	13	2	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9284866	T	T	9284866	1	4	54	0	1	0	0	0	0	0	0	0	12125	1247	43	2		2	PLCB4	20	9284866	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	118384	9284866	53740654	4006	60600											
PLCB4	5332	broad.mit.edu	37	chr20	9424527	9424527	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcatatgtaaagctgcttCaaagtctttcgatgagattt	7	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9424527	A	A	9424527	1	1	54	0	1	0	0	0	0	0	0	0	12125	841	29	3		3	PLCB4	20	9424527	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	139661	9424527	53600993	4007	60601											
C20orf103	24141	broad.mit.edu	37	chr20	9496154	9496154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaaatctctcaggcctttCcactaaccctgaaaaagata	6	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9496154	A	A	9496154	3	1	54	1	0	0	0	0	1	0	0	0	2097	855	30	3	125	3	C20orf103	20	9496154	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	71627	9496154	53529366	4008	60602											
PAK7	57144	broad.mit.edu	37	chr20	9633441	9633441	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctaatttctaccactGggatgtaaaccccgacttca	7	12	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9633441	A	A	9633441	1	1	54	0	1	0	0	0	0	0	0	0	11499	1363	47	4		4	PAK7	20	9633441	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	137287	9633441	53392079	4009	60603											
PAK7	57144	broad.mit.edu	37	chr20	9785006	9785006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatctttcaaatcaggcaCagaggatagacatatacatc	7	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9785006	A	A	9785006	1	1	54	0	1	0	0	0	0	0	0	0	11499	493	17	3		3	PAK7	20	9785006	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	151565	9785006	53240514	4010	60604											
SNAP25	6616	broad.mit.edu	37	chr20	10265249	10265249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttgtcatactttctccCttttttcttttggtccttct	4	12	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10265249	A	A	10265249	1	1	54	0	1	0	0	0	0	0	0	0	14944	696	24	2		2	SNAP25	20	10265249	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	480243	10265249	52760271	4011	60605											
SNAP25	6616	broad.mit.edu	37	chr20	10286971	10286971	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccccattgtgaatgttGtcctgtgtcatctgtcagct	8	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10286971	T	T	10286971	1	4	54	0	1	0	0	0	0	0	0	0	14944	1392	48	3		3	SNAP25	20	10286971	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21722	10286971	52738549	4012	60606											
C20orf94	128710	broad.mit.edu	37	chr20	10603340	10603340	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaacaaaaagcagtgtcacGagcaaatcgcagaccagaag	10	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10603340	C	C	10603340	2	2	54	1	0	0	0	0	0	0	0	1	2143	1045	37	4		4	C20orf94	20	10603340	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	316369	10603340	52422180	4013	60607											
SPTLC3	55304	broad.mit.edu	37	chr20	13144887	13144887	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtccctgtgagttaagttCtagtattttctgggacacag	10	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13144887	G	G	13144887	1	3	54	0	1	0	0	0	0	0	0	0	15243	928	32	4		4	SPTLC3	20	13144887	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2541547	13144887	49880633	4014	60608											
MACROD2	140733	broad.mit.edu	37	chr20	14606174	14606174	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattggccactccaatgctGacacaatgattgcatgaatg	8	10	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14606174	C	C	14606174	1	2	54	0	1	0	0	0	0	0	0	0	9234	1305	45	4		4	MACROD2	20	14606174	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1461287	14606174	48419346	4015	60609											
MACROD2	140733	broad.mit.edu	37	chr20	14957109	14957109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgacttcctgggtcccttGtacaaggaccatgtgataac	9	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14957109	T	T	14957109	1	4	54	0	1	0	0	0	0	0	0	0	9234	1392	48	3		3	MACROD2	20	14957109	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	350935	14957109	48068411	4016	60610											
MACROD2	140733	broad.mit.edu	37	chr20	15240571	15240571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggctgcaggtgtgggatGgaatagaatgaaatggaaca	15	3	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15240571	T	T	15240571	1	4	54	0	1	0	0	0	0	0	0	0	9234	1363	47	2		2	MACROD2	20	15240571	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	283462	15240571	47784949	4017	60611											
KIF16B	55614	broad.mit.edu	37	chr20	16253910	16253910	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggctctaccccgtcccGtggctgctgtagtcaaagac	10	16	2	1	rs75213889		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16253910	A	A	16253910	2	1	54	1	0	0	0	0	0	0	0	1	8348	1136	40	4		4	KIF16B	20	16253910	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1013339	16253910	46771610	4018	60612											
C20orf26	26074	broad.mit.edu	37	chr20	20066232	20066232	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggttcatgagcaggcCtagggctctgggtctttcgg	16	9	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20066232	T	T	20066232	1	4	54	0	1	0	0	0	0	0	0	0	2128	696	24	4		4	C20orf26	20	20066232	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3812322	20066232	42959288	4019	60613											
C20orf26	26074	broad.mit.edu	37	chr20	20158271	20158271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccagctttatcccaggtGctggggaaacagaaatgatg	13	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20158271	T	T	20158271	1	4	54	0	1	0	0	0	0	0	0	0	2128	1334	46	3		3	C20orf26	20	20158271	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	92039	20158271	42867249	4020	60614											
PLK1S1	55857	broad.mit.edu	37	chr20	21209767	21209767	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtcaggtaagtaagagcaGatggcagtgtccaggggccc	15	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21209767	A	A	21209767	1	1	54	0	1	0	0	0	0	0	0	0	12190	957	33	4		4	PLK1S1	20	21209767	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1051496	21209767	41815753	4021	60615											
FOXA2	3170	broad.mit.edu	37	chr20	22566233	22566233	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaggtggggagggaggggTgaggagagaagaatccagga	23	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22566233	C	C	22566233	1	2	54	0	1	0	0	0	0	0	0	0	6048	1711	59	5		5	FOXA2	20	22566233	5'Flank	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1356466	22566233	40459287	4022	60616											
CD93	22918	broad.mit.edu	37	chr20	23066137	23066137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataatgactctgagtctcGtccttgtcaccttccccaca	5	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23066137	T	T	23066137	3	4	54	1	0	0	0	0	1	0	0	0	3077	1136	40	3	1273	3	CD93	20	23066137	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	499904	23066137	39959383	4023	60617											
CST11	140880	broad.mit.edu	37	chr20	23434024	23434024	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgacaccgacgattccccaGtaccgacaagtcctagagtg	9	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23434024	C	C	23434024	1	2	54	0	1	0	0	0	0	0	0	0	4005	1044	36	4		4	CST11	20	23434024	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	367887	23434024	39591496	4024	60618											
DEFB116	245930	broad.mit.edu	37	chr20	29891163	29891163	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggttaagtattggatttcaTattctctgcaggcgtttctg	10	6	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29891163	C	C	29891163	3	2	54	1	0	0	0	0	1	0	0	0	4444	1406	49	5	150	5	DEFB116	20	29891163	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	6457139	29891163	33134357	4025	60619											
DEFB121	245934	broad.mit.edu	37	chr20	29993845	29993845	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtccccagagttctcTgaacatgcatcaggtttcct	8	12	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29993845	C	C	29993845	1	2	54	0	1	0	0	0	0	0	0	0	4447	1595	55	5		5	DEFB121	20	29993845	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	102682	29993845	33031675	4026	60620											
TPX2	22974	broad.mit.edu	37	chr20	30366810	30366810	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtttcctaccagtatcacAgttggatggaacctctccta	7	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30366810	T	T	30366810	1	4	54	0	1	0	0	0	0	0	0	0	16556	203	7	5		5	TPX2	20	30366810	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	372965	30366810	32658710	4027	60621											
TM9SF4	9777	broad.mit.edu	37	chr20	30729761	30729761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacgagtcctgagcacttgGggccacagaaaaggtggggc	15	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30729761	T	T	30729761	1	4	54	0	1	0	0	0	0	0	0	0	16103	1247	43	2		2	TM9SF4	20	30729761	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	362951	30729761	32295759	4028	60622											
DNMT3B	1789	broad.mit.edu	37	chr20	31379386	31379386	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacacctgtaggtggatgttGatgatgtctttctcttttag	10	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31379386	C	C	31379386	1	2	54	0	1	0	0	0	0	0	0	0	4717	1305	45	4		4	DNMT3B	20	31379386	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	649625	31379386	31646134	4029	60623											
C20orf70	140683	broad.mit.edu	37	chr20	31763135	31763135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacattctgactcatgtcCacacaggtggaggaacccaa	9	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31763135	A	A	31763135	1	1	54	0	1	0	0	0	0	0	0	0	2138	609	21	2		2	C20orf70	20	31763135	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	383749	31763135	31262385	4030	60624											
C20orf71	128861	broad.mit.edu	37	chr20	31814281	31814281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaaaagttctcccacaCatggtagaaagtcaggtaag	9	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31814281	A	A	31814281	3	1	54	1	0	0	0	0	1	0	0	0	2139	477	17	3	624	3	C20orf71	20	31814281	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	51146	31814281	31211239	4031	60625											
GDF5	8200	broad.mit.edu	37	chr20	34041656	34041656	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatccactcattcacccattCactcagcacttattgagcac	3	15	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34041656	A	A	34041656	1	1	54	0	1	0	0	0	0	0	0	0	6380	841	29	3		3	GDF5	20	34041656	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2227375	34041656	28983864	4032	60626											
CEP250	11190	broad.mit.edu	37	chr20	34063669	34063669	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtatatacctggttatgtCagtctcttaaaaccattcaa	5	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34063669	T	T	34063669	1	4	54	0	1	0	0	0	0	0	0	0	3282	841	29	4		4	CEP250	20	34063669	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22013	34063669	28961851	4033	60627											
C20orf152	140894	broad.mit.edu	37	chr20	34560506	34560506	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagcctgctgttgactgttGagaacagatggtttctattg	11	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34560506	C	C	34560506	1	2	54	0	1	0	0	0	0	0	0	0	2114	1305	45	4		4	C20orf152	20	34560506	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	496837	34560506	28465014	4034	60628											
SLA2	84174	broad.mit.edu	37	chr20	35261997	35261997	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatgttatactctctgcctGagacttcagacagcaccgtc	9	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35261997	C	C	35261997	4	2	54	1	0	0	0	0	0	1	0	0	14477	1294	45	4	578	4	SLA2	20	35261997	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	701491	35261997	27763523	4035	60629											
CTNNBL1	56259	broad.mit.edu	37	chr20	36431270	36431270	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaacctcttttgttcacaggGaaaagaagatctcccggagc	9	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36431270	C	C	36431270	3	2	54	1	0	0	0	0	1	0	0	0	4052	1188	41	4	1075	4	CTNNBL1	20	36431270	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1169273	36431270	26594250	4036	60630											
CTNNBL1	56259	broad.mit.edu	37	chr20	36450658	36450658	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtgtcttccctgaacagaGaagatgacatggccaggctg	14	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36450658	C	C	36450658	1	2	54	0	1	0	0	0	0	0	0	0	4052	957	33	4		4	CTNNBL1	20	36450658	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19388	36450658	26574862	4037	60631											
VSTM2L	128434	broad.mit.edu	37	chr20	36570855	36570855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcgtgccactgcactccaGcctgggtaacagagactctg	11	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36570855	T	T	36570855	1	4	54	0	1	0	0	0	0	0	0	0	17357	986	34	3		3	VSTM2L	20	36570855	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	120197	36570855	26454665	4038	60632											
RPRD1B	58490	broad.mit.edu	37	chr20	36676823	36676823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaacgaagtgtgtatggcGgcgagttcatacagcagctg	14	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36676823	T	T	36676823	3	4	54	1	0	0	0	0	1	0	0	0	13727	1116	39	1	365	1	RPRD1B	20	36676823	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	105968	36676823	26348697	4039	60633											
KIAA1755	85449	broad.mit.edu	37	chr20	36846687	36846687	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaattctgcgtgggcttTctccactgtctccaaacttc	6	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36846687	C	C	36846687	3	2	54	1	0	0	0	0	1	0	0	0	8327	1792	62	5	976	5	KIAA1755	20	36846687	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	169864	36846687	26178833	4040	60634											
BPI	671	broad.mit.edu	37	chr20	36965663	36965663	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccggctgcctttccccagGgaatcctctccagatcttaa	7	16	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36965663	T	T	36965663	1	4	54	0	1	0	0	0	0	0	0	0	1499	1247	43	2		2	BPI	20	36965663	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	118976	36965663	26059857	4041	60635											
ADIG	149685	broad.mit.edu	37	chr20	37214652	37214652	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgaccatccaagaggcCttgcctcgtatctccacaga	9	13	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37214652	T	T	37214652	1	4	54	0	1	0	0	0	0	0	0	0	316	696	24	4		4	ADIG	20	37214652	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	248989	37214652	25810868	4042	60636											
PLCG1	5335	broad.mit.edu	37	chr20	39791046	39791046	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgacccacaggtcagaggtCatgagaagctggatgagacc	13	10	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39791046	A	A	39791046	1	1	54	0	1	0	0	0	0	0	0	0	12130	841	29	3		3	PLCG1	20	39791046	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2576394	39791046	23234474	4043	60637											
CHD6	84181	broad.mit.edu	37	chr20	40143380	40143380	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatagaggagcaacacgatCagtgtcagccagatcccatc	10	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40143380	T	T	40143380	1	4	54	0	1	0	0	0	0	0	0	0	3360	841	29	4		4	CHD6	20	40143380	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	352334	40143380	22882140	4044	60638											
PTPRT	11122	broad.mit.edu	37	chr20	40838758	40838758	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttcatgctaaaaactctCaataaattgggtattaatgg	6	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40838758	T	T	40838758	1	4	54	0	1	0	0	0	0	0	0	0	12920	841	29	4		4	PTPRT	20	40838758	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	695378	40838758	22186762	4045	60639											
PTPRT	11122	broad.mit.edu	37	chr20	41407549	41407549	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctaaaagcctcaggaagtAacccagagggtagggacttt	11	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41407549	G	G	41407549	1	3	54	0	1	0	0	0	0	0	0	0	12920	377	13	5		5	PTPRT	20	41407549	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	568791	41407549	21617971	4046	60640											
PTPRT	11122	broad.mit.edu	37	chr20	41680948	41680948	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgaacccacctggctattGtgtaaaacaaaatatcacgt	6	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41680948	C	C	41680948	1	2	54	0	1	0	0	0	0	0	0	0	12920	1392	48	4		4	PTPRT	20	41680948	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	273399	41680948	21344572	4047	60641											
PTPRT	11122	broad.mit.edu	37	chr20	41741182	41741182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagactatgtggaaagaaaGgatggagtgaaaagaaagga	15	1	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41741182	T	T	41741182	1	4	54	0	1	0	0	0	0	0	0	0	12920	1015	35	2		2	PTPRT	20	41741182	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	60234	41741182	21284338	4048	60642											
MYBL2	4605	broad.mit.edu	37	chr20	42315707	42315707	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagatcgccaagatgttgccAgggaggtaagctgtcttctt	13	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42315707	G	G	42315707	2	3	54	1	0	0	0	0	0	0	0	1	10104	175	7	5		5	MYBL2	20	42315707	Silent	SNP	A	TCGA-17-Z022-01A-01W-0746-08	574525	42315707	20709813	4049	60643											
MYBL2	4605	broad.mit.edu	37	chr20	42331064	42331064	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacacttaaatatttcccgTaatgaatgagtcctcttgta	6	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42331064	G	G	42331064	1	3	54	0	1	0	0	0	0	0	0	0	10104	1653	57	5		5	MYBL2	20	42331064	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	15357	42331064	20694456	4050	60644											
TOX2	84969	broad.mit.edu	37	chr20	42635448	42635448	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggtgagtccctatcgcCtgctgcagttcctgctgatg	11	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42635448	T	T	42635448	1	4	54	0	1	0	0	0	0	0	0	0	16502	696	24	4		4	TOX2	20	42635448	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	304384	42635448	20390072	4051	60645											
TOX2	84969	broad.mit.edu	37	chr20	42694773	42694773	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggaagagcagaacagccCttctgtgaccgtgtggggag	16	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42694773	T	T	42694773	1	4	54	0	1	0	0	0	0	0	0	0	16502	696	24	4		4	TOX2	20	42694773	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	59325	42694773	20330747	4052	60646											
HNF4A	3172	broad.mit.edu	37	chr20	43031278	43031278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtggacagttctccaCagggaggtaggggaaaagag	19	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43031278	A	A	43031278	1	1	54	0	1	0	0	0	0	0	0	0	7320	493	17	3		3	HNF4A	20	43031278	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	336505	43031278	19994242	4053	60647											
RIMS4	140730	broad.mit.edu	37	chr20	43394307	43394307	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgagcctttggtgattagGaaacagccttggtagaaccg	12	9	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43394307	C	C	43394307	1	2	54	0	1	0	0	0	0	0	0	0	13481	1189	41	4		4	RIMS4	20	43394307	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	363029	43394307	19631213	4054	60648											
WFDC12	128488	broad.mit.edu	37	chr20	43752415	43752415	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtattgcttcttccatAttccaagtctcaggaccctc	7	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43752415	T	T	43752415	1	4	54	0	1	0	0	0	0	0	0	0	17477	464	16	5		5	WFDC12	20	43752415	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	358108	43752415	19273105	4055	60649											
RBPJL	11317	broad.mit.edu	37	chr20	43941996	43941996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctaatcctaaccctcaCcctcaccctaaccctcaccc	0	24	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43941996	A	A	43941996	1	1	54	0	1	0	0	0	0	0	0	0	13270	522	18	3		3	RBPJL	20	43941996	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	189581	43941996	19083524	4056	60650											
RBPJL	11317	broad.mit.edu	37	chr20	43942153	43942153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctcttcaaccgcctgcGctctcagacggtctccacac	6	20	4	1	rs146643791		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43942153	T	T	43942153	3	4	54	1	0	0	0	0	1	0	0	0	13270	1087	38	3	691	3	RBPJL	20	43942153	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	157	43942153	19083367	4057	60651											
SYS1	90196	broad.mit.edu	37	chr20	43995878	43995878	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgtgaagtctctgttgGtttgggagagatagtgaggg	17	2	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43995878	T	T	43995878	1	4	54	0	1	0	0	0	0	0	0	0	15583	1276	44	3		3	SYS1	20	43995878	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	53725	43995878	19029642	4058	60652											
TNNC2	7125	broad.mit.edu	37	chr20	44452837	44452837	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaccacactcgacgcccCgcttccgcactcccaacacg	7	22	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44452837	T	T	44452837	1	4	54	0	1	0	0	0	0	0	0	0	16448	667	23	4		4	TNNC2	20	44452837	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	456959	44452837	18572683	4059	60653											
ZNF335	63925	broad.mit.edu	37	chr20	44579338	44579338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaccagacaaagtggacCtgggaaaaccaaaatcctgt	11	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44579338	A	A	44579338	1	1	54	0	1	0	0	0	0	0	0	0	17978	696	24	2		2	ZNF335	20	44579338	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	126501	44579338	18446182	4060	60654											
CDH22	64405	broad.mit.edu	37	chr20	44845305	44845305	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggttggaggggggctggggGatagctggtggcttgggagg	25	3	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44845305	T	T	44845305	1	4	54	0	1	0	0	0	0	0	0	0	3137	1189	41	3		3	CDH22	20	44845305	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	265967	44845305	18180215	4061	60655											
CDH22	64405	broad.mit.edu	37	chr20	44903953	44903953	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagtagctgttcgccaagtCtggatgctcctttccccata	9	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44903953	A	A	44903953	1	1	54	0	1	0	0	0	0	0	0	0	3137	928	32	3		3	CDH22	20	44903953	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	58648	44903953	18121567	4062	60656											
EYA2	2139	broad.mit.edu	37	chr20	45617908	45617908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtccatgcaagtagtacCgtgtttgtttgtttggagat	11	7	0	1	rs138855383	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45617908	A	A	45617908	1	1	54	0	1	0	0	0	0	0	0	0	5372	667	23	1		1	EYA2	20	45617908	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	713955	45617908	17407612	4063	60657											
EYA2	2139	broad.mit.edu	37	chr20	45633383	45633383	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagtcacacggctgaatctGactgcacaggagacagaaaa	10	11	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45633383	T	T	45633383	1	4	54	0	1	0	0	0	0	0	0	0	5372	1305	45	3		3	EYA2	20	45633383	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15475	45633383	17392137	4064	60658											
EYA2	2139	broad.mit.edu	37	chr20	45811892	45811892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgggtattggctgcaatcCggggtcctcacagagcgttt	14	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45811892	A	A	45811892	1	1	54	0	1	0	0	0	0	0	0	0	5372	667	23	1		1	EYA2	20	45811892	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	178509	45811892	17213628	4065	60659											
NCOA3	8202	broad.mit.edu	37	chr20	46268215	46268215	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttcttaccatgacaaagTgctgttttgtcaaggttgat	8	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46268215	C	C	46268215	1	2	54	0	1	0	0	0	0	0	0	0	10325	1711	59	5		5	NCOA3	20	46268215	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	456323	46268215	16757305	4066	60660											
PREX1	57580	broad.mit.edu	37	chr20	47268150	47268150	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaagaggtgacatctgagCagagatcagagggagggagg	17	5	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47268150	T	T	47268150	1	4	54	0	1	0	0	0	0	0	0	0	12582	725	25	4		4	PREX1	20	47268150	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	999935	47268150	15757370	4067	60661											
PREX1	57580	broad.mit.edu	37	chr20	47270134	47270134	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactgcaaccccagacacgCgcaaggactccacctccacc	6	21	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47270134	T	T	47270134	1	4	54	0	1	0	0	0	0	0	0	0	12582	783	27	4		4	PREX1	20	47270134	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1984	47270134	15755386	4068	60662											
PREX1	57580	broad.mit.edu	37	chr20	47309363	47309363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtcagtgtcccctacacGtcacctcccagatgcaactg	8	15	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47309363	T	T	47309363	1	4	54	0	1	0	0	0	0	0	0	0	12582	1160	40	3		3	PREX1	20	47309363	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	39229	47309363	15716157	4069	60663											
PREX1	57580	broad.mit.edu	37	chr20	47346134	47346134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactccattcttccagttGcttgggcccaaaaccctaaa	6	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47346134	T	T	47346134	1	4	54	0	1	0	0	0	0	0	0	0	12582	1334	46	3		3	PREX1	20	47346134	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	36771	47346134	15679386	4070	60664											
KCNB1	3745	broad.mit.edu	37	chr20	47990218	47990218	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcacccagagctccccGccagcccacttctggggctg	11	18	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47990218	T	T	47990218	2	4	54	1	0	0	0	0	0	0	0	1	8082	1086	38	3		3	KCNB1	20	47990218	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	644084	47990218	15035302	4071	60665											
KCNB1	3745	broad.mit.edu	37	chr20	48098460	48098460	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagactcaccttggcagcCacagaggaattgggcttctc	10	14	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48098460	A	A	48098460	2	1	54	1	0	0	0	0	0	0	0	1	8082	581	21	2		2	KCNB1	20	48098460	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	108242	48098460	14927060	4072	60666											
PTGIS	5740	broad.mit.edu	37	chr20	48127626	48127626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtgccccgccccccaggGcatgttgtaattcttcagcc	9	15	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48127626	A	A	48127626	3	1	54	1	0	0	0	0	1	0	0	0	12858	1203	42	4	213	4	PTGIS	20	48127626	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	29166	48127626	14897894	4073	60667											
NFATC2	4773	broad.mit.edu	37	chr20	50139722	50139722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgccctgctcgcagggcCccaggaactccacggccggg	13	18	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50139722	A	A	50139722	3	1	54	1	0	0	0	0	1	0	0	0	10457	623	22	2	1803	2	NFATC2	20	50139722	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2012096	50139722	12885798	4074	60668											
NFATC2	4773	broad.mit.edu	37	chr20	50164289	50164289	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttctccaatcaaacaccaaAgagtggttcttgagtcctcg	8	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50164289	T	T	50164289	1	4	54	0	1	0	0	0	0	0	0	0	10457	87	3	5		5	NFATC2	20	50164289	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	24567	50164289	12861231	4075	60669											
ZFP64	55734	broad.mit.edu	37	chr20	50701509	50701509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctgtgcacgcgcagggCggccgcgctggagcaggagt	18	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50701509	A	A	50701509	3	1	54	1	0	0	0	0	1	0	0	0	17778	768	27	3	416	3	ZFP64	20	50701509	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	537220	50701509	12324011	4076	60670											
ZFP64	55734	broad.mit.edu	37	chr20	50768638	50768638	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagagaattctacttaagatTtctttttctcaattcctttc	3	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50768638	C	C	50768638	1	2	54	0	1	0	0	0	0	0	0	0	17778	1856	64	5		5	ZFP64	20	50768638	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	67129	50768638	12256882	4077	60671											
TSHZ2	128553	broad.mit.edu	37	chr20	51621567	51621567	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacatataagaagccaggtTtaagccgggcctggtggctc	12	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51621567	A	A	51621567	1	1	54	0	1	0	0	0	0	0	0	0	16749	1856	64	5		5	TSHZ2	20	51621567	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	852929	51621567	11403953	4078	60672											
TSHZ2	128553	broad.mit.edu	37	chr20	51748087	51748088	+	Intron	DNP	GG	TT	TT													cttctcagttttgaacatcaGggagaaacgagtggccccac							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51748088	TT	TT	51748087	1	4	54	0	1	0	0	0	0	0	0	0	16749	1015	35	2		2	TSHZ2	20	51748087	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	126520	51748087	11277433	4079	60673											
TSHZ2	128553	broad.mit.edu	37	chr20	51790929	51790929	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagttgagacctggggactcAaccataagtcttgctgtttg	11	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51790929	T	T	51790929	1	4	54	0	1	0	0	0	0	0	0	0	16749	145	5	5		5	TSHZ2	20	51790929	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	42842	51790929	11234591	4080	60674											
TSHZ2	128553	broad.mit.edu	37	chr20	51885967	51885967	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcatttccttccctccaActttcccattctcttcctgc	2	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51885967	T	T	51885967	1	4	54	0	1	0	0	0	0	0	0	0	16749	58	2	5		5	TSHZ2	20	51885967	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	95038	51885967	11139553	4081	60675											
CBLN4	140689	broad.mit.edu	37	chr20	54579067	54579067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcggggaggaagaggagCccttggagtccgtggccggg	20	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54579067	A	A	54579067	3	1	54	1	0	0	0	0	1	0	0	0	2733	739	26	3	456	3	CBLN4	20	54579067	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2693100	54579067	8446453	4082	60676											
CASS4	57091	broad.mit.edu	37	chr20	54987701	54987701	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtttaacataagtttaaGtgtgggaaatagatgtgttg	11	1	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54987701	A	A	54987701	1	1	54	0	1	0	0	0	0	0	0	0	2709	1044	36	4		4	CASS4	20	54987701	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	408634	54987701	8037819	4083	60677											
BMP7	655	broad.mit.edu	37	chr20	55758869	55758869	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccgtggaccggatgctGcggaagtggacctccgtggc	15	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55758869	T	T	55758869	2	4	54	1	0	0	0	0	0	0	0	1	1471	1306	46	3		3	BMP7	20	55758869	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	771168	55758869	7266651	4084	60678											
SYCP2	10388	broad.mit.edu	37	chr20	58448826	58448826	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccttaaatagacaagcaaTgtgtatctgattaagatgat	7	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58448826	C	C	58448826	1	2	54	0	1	0	0	0	0	0	0	0	15551	1479	51	5		5	SYCP2	20	58448826	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2689957	58448826	4576694	4085	60679											
CDH26	60437	broad.mit.edu	37	chr20	58562746	58562746	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtggcagacgctgaggcctCttctgtaggatcactcacaa	11	11	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58562746	T	T	58562746	1	4	54	0	1	0	0	0	0	0	0	0	3140	928	32	4		4	CDH26	20	58562746	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	113920	58562746	4462774	4086	60680											
CDH4	1002	broad.mit.edu	37	chr20	59951813	59951813	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcaagccctggaaggtgGgtgctcacattcccatgcta	12	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59951813	C	C	59951813	1	2	54	0	1	0	0	0	0	0	0	0	3142	1247	43	4		4	CDH4	20	59951813	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1389067	59951813	3073707	4087	60681											
CDH4	1002	broad.mit.edu	37	chr20	60005737	60005737	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatcagtcgccagtcctgcTtccctccttattacctgctg	7	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60005737	A	A	60005737	1	1	54	0	1	0	0	0	0	0	0	0	3142	1624	56	5		5	CDH4	20	60005737	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	53924	60005737	3019783	4088	60682											
CDH4	1002	broad.mit.edu	37	chr20	60089658	60089658	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttatttccatgttgcGgggcctagcaggcccctaaa	9	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60089658	A	A	60089658	1	1	54	0	1	0	0	0	0	0	0	0	3142	1131	39	4		4	CDH4	20	60089658	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	83921	60089658	2935862	4089	60683											
ARFGAP1	55738	broad.mit.edu	37	chr20	61910280	61910280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcgctacgtggggtttgGgaacacgccaccgcctcaga	13	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61910280	T	T	61910280	3	4	54	1	0	0	0	0	1	0	0	0	851	1232	43	2	582	2	ARFGAP1	20	61910280	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1820622	61910280	1115240	4090	60684											
TPTE	7179	broad.mit.edu	37	chr21	10907329	10907329	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaaatttctctctgtgacaGaaatcagtcaggatagacat	7	8	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10907329	T	T	10907329	1	4	54	0	1	0	0	0	0	0	0	0	16554	957	33	3		3	TPTE	21	10907329	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08		10907329	37222566	4091	60685											
TPTE	7179	broad.mit.edu	37	chr21	10908820	10908820	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatgggtttctattatattCatacctgttattttcaataa	4	6	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10908820	T	T	10908820	1	4	54	0	1	0	0	0	0	0	0	0	16554	841	29	4		4	TPTE	21	10908820	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1491	10908820	37221075	4092	60686											
TPTE	7179	broad.mit.edu	37	chr21	10909662	10909662	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccatcagtcgagcacaggtCtcctggatggctcccccttc	9	17	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10909662	A	A	10909662	1	1	54	0	1	0	0	0	0	0	0	0	16554	928	32	3		3	TPTE	21	10909662	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	842	10909662	37220233	4093	60687											
TPTE	7179	broad.mit.edu	37	chr21	10965027	10965027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggatcttctgcctacCttcaccctgcaatgagaagt	11	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10965027	A	A	10965027	1	1	54	0	1	0	0	0	0	0	0	0	16554	696	24	2		2	TPTE	21	10965027	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	55365	10965027	37164868	4094	60688											
TMPRSS15	5651	broad.mit.edu	37	chr21	19642343	19642343	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaccctggcatacactccGgggcgattaggcagggcaca	14	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19642343	T	T	19642343	2	4	54	1	0	0	0	0	0	0	0	1	16369	1103	39	1		1	TMPRSS15	21	19642343	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8677316	19642343	28487552	4095	60689											
TMPRSS15	5651	broad.mit.edu	37	chr21	19754741	19754741	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgctgaacagcagctgCaacatgttgcaggagactca	10	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19754741	G	G	19754741	1	3	54	0	1	0	0	0	0	0	0	0	16369	725	25	4		4	TMPRSS15	21	19754741	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112398	19754741	28375154	4096	60690											
ATP5J	522	broad.mit.edu	37	chr21	27099902	27099902	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccagcccagggtctaccctCagaactctccatgtgtttgt	9	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27099902	T	T	27099902	1	4	54	0	1	0	0	0	0	0	0	0	1162	841	29	4		4	ATP5J	21	27099902	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7345161	27099902	21029993	4097	60691											
ADAMTS5	11096	broad.mit.edu	37	chr21	28307047	28307047	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccaggatctgctttcgtGgtaggtccagcaaacagtta	12	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28307047	A	A	28307047	3	1	54	1	0	0	0	0	1	0	0	0	269	1348	47	4	1385	4	ADAMTS5	21	28307047	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1207145	28307047	19822848	4098	60692											
KRTAP27-1	643812	broad.mit.edu	37	chr21	31709463	31709463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgcaacattgaccagaGgtctacaggaactggattca	11	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31709463	T	T	31709463	3	4	54	1	0	0	0	0	1	0	0	0	8616	1000	35	2	103	2	KRTAP27-1	21	31709463	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3402416	31709463	16420432	4099	60693											
KRTAP13-1	140258	broad.mit.edu	37	chr21	31768471	31768471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctacctgcactacccaGcctcctcctgtggcttttcc	8	17	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768471	T	T	31768471	3	4	54	1	0	0	0	0	1	0	0	0	8593	971	34	3	69	3	KRTAP13-1	21	31768471	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	59008	31768471	16361424	4100	60694											
HUNK	30811	broad.mit.edu	37	chr21	33326481	33326481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaacccctttagtgggGttgtcctcccattatcatga	7	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33326481	T	T	33326481	1	4	54	0	1	0	0	0	0	0	0	0	7528	1276	44	3		3	HUNK	21	33326481	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1558010	33326481	14803414	4101	60695											
C21orf59	56683	broad.mit.edu	37	chr21	33965216	33965216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgcctgcctcggcctcCcaaagtgctgggattacagg	12	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33965216	A	A	33965216	1	1	54	0	1	0	0	0	0	0	0	0	2152	638	22	2		2	C21orf59	21	33965216	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	638735	33965216	14164679	4102	60696											
CLDN14	23562	broad.mit.edu	37	chr21	37919741	37919741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagcttttgaaatggttGtgtaaagagaccaaaaagaa	10	3	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37919741	T	T	37919741	1	4	54	0	1	0	0	0	0	0	0	0	3506	1392	48	3		3	CLDN14	21	37919741	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3954525	37919741	10210154	4103	60697											
KCNJ6	3763	broad.mit.edu	37	chr21	39010031	39010031	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaatatgactgtatctggaGaactggccttagggagataa	11	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39010031	C	C	39010031	1	2	54	0	1	0	0	0	0	0	0	0	8125	957	33	4		4	KCNJ6	21	39010031	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1090290	39010031	9119864	4104	60698											
ERG	2078	broad.mit.edu	37	chr21	39912161	39912161	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttggtttcttattgaggTgaagttcacataacatgaaa	8	4	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39912161	G	G	39912161	1	3	54	0	1	0	0	0	0	0	0	0	5264	1711	59	5		5	ERG	21	39912161	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	902130	39912161	8217734	4105	60699											
ERG	2078	broad.mit.edu	37	chr21	39990642	39990642	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacacagacctctcagcatCaccctctgtggggcaggaga	10	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39990642	G	G	39990642	1	3	54	0	1	0	0	0	0	0	0	0	5264	841	29	4		4	ERG	21	39990642	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	78481	39990642	8139253	4106	60700											
DSCAM	1826	broad.mit.edu	37	chr21	42200959	42200959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgccctgtcctactccCctgggctgtgggaatacttg	12	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42200959	A	A	42200959	1	1	54	0	1	0	0	0	0	0	0	0	4808	638	22	2		2	DSCAM	21	42200959	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2210317	42200959	5928936	4107	60701											
UBASH3A	53347	broad.mit.edu	37	chr21	43831300	43831300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacatagatatagacacaCagacacacacatatatacat	3	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43831300	A	A	43831300	1	1	54	0	1	0	0	0	0	0	0	0	16965	493	17	3		3	UBASH3A	21	43831300	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1630341	43831300	4298595	4108	60702											
PDE9A	5152	broad.mit.edu	37	chr21	44188983	44188983	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtttagcactgaagatAgggtcaccttctccttgttc	8	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44188983	T	T	44188983	1	4	54	0	1	0	0	0	0	0	0	0	11749	435	15	5		5	PDE9A	21	44188983	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	357683	44188983	3940912	4109	60703											
U2AF1	7307	broad.mit.edu	37	chr21	44515895	44515895	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggttagaacatgttaaccGagtgaactcttgtgtttaaa	9	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44515895	A	A	44515895	1	1	54	0	1	0	0	0	0	0	0	0	16947	1073	37	4		4	U2AF1	21	44515895	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	326912	44515895	3614000	4110	60704											
RRP1B	23076	broad.mit.edu	37	chr21	45107289	45107289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaggaactttcctcgtgGtagaatgtcaggaaattgcg	12	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45107289	T	T	45107289	1	4	54	0	1	0	0	0	0	0	0	0	13799	1276	44	3		3	RRP1B	21	45107289	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	591394	45107289	3022606	4111	60705											
TRAPPC10	7109	broad.mit.edu	37	chr21	45513788	45513788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcagggacaggtgctgtGgggcctaaagcagcatgcat	17	8	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45513788	T	T	45513788	1	4	54	0	1	0	0	0	0	0	0	0	16581	1363	47	2		2	TRAPPC10	21	45513788	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	406499	45513788	2616107	4112	60706											
C21orf29	54084	broad.mit.edu	37	chr21	46003087	46003087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagctgagctgagctgcaGggattaaacagccctggctg	14	10	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46003087	T	T	46003087	1	4	54	0	1	0	0	0	0	0	0	0	2146	1015	35	2		2	C21orf29	21	46003087	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	489299	46003087	2126808	4113	60707											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46011199	46011199	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcaaagccagagagggCagagcttgctggggcagctg	18	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46011199	A	A	46011199	1	1	54	0	1	0	0	0	0	0	0	0	8584	725	25	3		3	KRTAP10-6	21	46011199	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8112	46011199	2118696	4114	60708											
KRTAP12-2	353323	broad.mit.edu	37	chr21	46086600	46086600	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacagctgacttgaagctCatgggcacacacacagaaga	9	12	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46086600	T	T	46086600	3	4	54	1	0	0	0	0	1	0	0	0	8590	826	29	4	240	4	KRTAP12-2	21	46086600	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	75401	46086600	2043295	4115	60709											
ADARB1	104	broad.mit.edu	37	chr21	46591709	46591709	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggattgtgttttttcccGtaacatcttctactgacagt	9	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46591709	A	A	46591709	1	1	54	0	1	0	0	0	0	0	0	0	282	1160	40	4		4	ADARB1	21	46591709	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	505109	46591709	1538186	4116	60710											
POTEH	23784	broad.mit.edu	37	chr22	16287437	16287437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggcccactttgttcttgCcgctccccctgcagcagggg	12	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287437	A	A	16287437	3	1	54	1	0	0	0	0	1	0	0	0	12363	739	26	3	1228	3	POTEH	22	16287437	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08		16287437	35017129	4117	60711											
POTEH	23784	broad.mit.edu	37	chr22	16287674	16287674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgccgctccccctgcacCaggggaagcagtggcagcac	12	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287674	A	A	16287674	3	1	54	1	0	0	0	0	1	0	0	0	12363	595	21	2	1465	2	POTEH	22	16287674	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	237	16287674	35016892	4118	60712											
TUBA8	51807	broad.mit.edu	37	chr22	18562489	18562489	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggaaagggcagcccatgaGaccaattgtgaagcccatct	13	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18562489	A	A	18562489	1	1	54	0	1	0	0	0	0	0	0	0	16876	957	33	4		4	TUBA8	22	18562489	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2274815	18562489	32742077	4119	60713											
PEX26	55670	broad.mit.edu	37	chr22	18570840	18570840	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagctccgcatccgtgactGagggtccctgcgcaccacag	11	17	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18570840	A	A	18570840	2	1	54	1	0	0	0	0	0	0	0	1	11841	1285	45	4		4	PEX26	22	18570840	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8351	18570840	32733726	4120	60714											
DGCR2	9993	broad.mit.edu	37	chr22	19112782	19112782	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatccagaaggagcaccgcGtggacttcccacactccaag	10	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19112782	A	A	19112782	1	1	54	0	1	0	0	0	0	0	0	0	4501	1160	40	4		4	DGCR2	22	19112782	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	541942	19112782	32191784	4121	60715											
CLTCL1	8218	broad.mit.edu	37	chr22	19220941	19220941	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctacgagctcacaagtgtttCtaccttatcttctttcagcc	5	13	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19220941	G	G	19220941	1	3	54	0	1	0	0	0	0	0	0	0	3599	928	32	4		4	CLTCL1	22	19220941	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	108159	19220941	32083625	4122	60716											
TXNRD2	10587	broad.mit.edu	37	chr22	19919783	19919783	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggtgtgcccagctgcagtCagctaggagggaagccaccc	14	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19919783	T	T	19919783	1	4	54	0	1	0	0	0	0	0	0	0	16934	841	29	4		4	TXNRD2	22	19919783	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	698842	19919783	31384783	4123	60717											
ZNF74	7625	broad.mit.edu	37	chr22	20759683	20759683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaatgggagctgaaggcGgtgccctctcaacagcaggg	15	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20759683	T	T	20759683	2	4	54	1	0	0	0	0	0	0	0	1	18256	1103	39	1		1	ZNF74	22	20759683	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	839900	20759683	30544883	4124	60718											
KLHL22	84861	broad.mit.edu	37	chr22	20805834	20805834	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgaatgaccgtatttatgTggtggggagatttgatggta	15	3	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20805834	A	A	20805834	1	1	54	0	1	0	0	0	0	0	0	0	8448	1711	59	5		5	KLHL22	22	20805834	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	46151	20805834	30498732	4125	60719											
RIMBP3C	150221	broad.mit.edu	37	chr22	21742777	21742777	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccttctgtggcccacctcGaggactttcaggggctcacc	11	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21742777	C	C	21742777	3	2	54	1	0	0	0	0	1	0	0	0	13475	1059	37	4	4632	4	RIMBP3C	22	21742777	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	936943	21742777	29561789	4126	60720											
ZNF280A	129025	broad.mit.edu	37	chr22	22868873	22868873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttacagacagcagagggcCccatggcgatgtgtacacta	11	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22868873	A	A	22868873	3	1	54	1	0	0	0	0	1	0	0	0	17940	623	22	2	550	2	ZNF280A	22	22868873	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1126096	22868873	28435693	4127	60721											
RAB36	9609	broad.mit.edu	37	chr22	23488968	23488968	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagaagtaaagcaggtgaatCaaggaggtctgtccattgtc	12	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23488968	G	G	23488968	1	3	54	0	1	0	0	0	0	0	0	0	13034	841	29	4		4	RAB36	22	23488968	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	620095	23488968	27815598	4128	60722											
C22orf43	51233	broad.mit.edu	37	chr22	23968190	23968190	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcatcatcattgtcttccTcacttgatggcagaaatttt	7	9	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23968190	C	C	23968190	3	2	54	1	0	0	0	0	1	0	0	0	2172	1551	54	5	479	5	C22orf43	22	23968190	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	479222	23968190	27336376	4129	60723											
GGT5	2687	broad.mit.edu	37	chr22	24615892	24615892	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatgtccggcctggacacAggactcatggtggggccaga	15	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24615892	C	C	24615892	1	2	54	0	1	0	0	0	0	0	0	0	6426	203	7	5		5	GGT5	22	24615892	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	647702	24615892	26688674	4130	60724											
MYO18B	84700	broad.mit.edu	37	chr22	26219563	26219563	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagctgaacacggccaccttCaagcaccaccttcgacagat	8	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26219563	A	A	26219563	3	1	54	1	0	0	0	0	1	0	0	0	10160	825	29	3	2659	3	MYO18B	22	26219563	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1603671	26219563	25085003	4131	60725											
MYO18B	84700	broad.mit.edu	37	chr22	26231281	26231282	+	Missense_Mutation	DNP	GG	AT	AT													aggtccgcttaccagctggaGgaggtgcccaggatgccaga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	26231282	AT	AT	26231281	3	1	54	1	0	0	0	0	1	0	0	0	10160	1001	35	4	3141	4	MYO18B	22	26231281	Missense_Mutation	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	11718	26231281	25073285	4132	60726											
SEZ6L	23544	broad.mit.edu	37	chr22	26708048	26708048	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataccaactttaggattagAaccctttccagggttcactg	7	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26708048	T	T	26708048	1	4	54	0	1	0	0	0	0	0	0	0	14256	261	9	5		5	SEZ6L	22	26708048	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	476767	26708048	24596518	4133	60727											
AP1B1	162	broad.mit.edu	37	chr22	29726335	29726335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggacgaaggggaggctcCaaggctgcagggcgggtgcc	20	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29726335	A	A	29726335	1	1	54	0	1	0	0	0	0	0	0	0	733	609	21	2		2	AP1B1	22	29726335	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3018287	29726335	21578231	4134	60728											
SLC5A1	6523	broad.mit.edu	37	chr22	32480277	32480277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgacaaagctgaggccCagaatgggaaggtgatttgc	15	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32480277	A	A	32480277	1	1	54	0	1	0	0	0	0	0	0	0	14775	609	21	2		2	SLC5A1	22	32480277	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2753942	32480277	18824289	4135	60729											
SLC5A4	6527	broad.mit.edu	37	chr22	32646507	32646507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgggagtgcaaattaGttcaaacattgtggaaggca	14	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32646507	T	T	32646507	1	4	54	0	1	0	0	0	0	0	0	0	14781	1044	36	3		3	SLC5A4	22	32646507	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	166230	32646507	18658059	4136	60730											
ISX	91464	broad.mit.edu	37	chr22	35463223	35463223	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggaggagtgatatggacaGaccagaagggccaggtgaag	17	6	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35463223	T	T	35463223	3	4	54	1	0	0	0	0	1	0	0	0	7935	942	33	3	145	3	ISX	22	35463223	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2816716	35463223	15841343	4137	60731											
RBM9	23543	broad.mit.edu	37	chr22	36279435	36279435	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaaaaaggctagaagcccTattgtttgacggagaggcct	12	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36279435	C	C	36279435	1	2	54	0	1	0	0	0	0	0	0	0	13255	1537	53	5		5	RBM9	22	36279435	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	816212	36279435	15025131	4138	60732											
CACNG2	10369	broad.mit.edu	37	chr22	37050290	37050290	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaatgcgggtatactttattCcatgtttctctttcttcttg	7	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37050290	G	G	37050290	1	3	54	0	1	0	0	0	0	0	0	0	2583	870	30	4		4	CACNG2	22	37050290	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	770855	37050290	14254276	4139	60733											
TRIOBP	11078	broad.mit.edu	37	chr22	38130882	38130882	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaagagaagcccactcacGagcccccctgagaactgggg	13	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38130882	T	T	38130882	2	4	54	1	0	0	0	0	0	0	0	1	16678	1045	37	3		3	TRIOBP	22	38130882	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1080592	38130882	13173684	4140	60734											
PDGFB	5155	broad.mit.edu	37	chr22	39631851	39631851	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgagtggtcactcagcatcTcataaagctcctcgggaatg	10	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39631851	C	C	39631851	3	2	54	1	0	0	0	0	1	0	0	0	11752	1551	54	5	653	5	PDGFB	22	39631851	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1500969	39631851	11672715	4141	60735											
SYNGR1	9145	broad.mit.edu	37	chr22	39777783	39777783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggactacatggaccccaGccaggactccagcatgcctt	9	16	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39777783	T	T	39777783	3	4	54	1	0	0	0	0	1	0	0	0	15567	971	34	3	783	3	SYNGR1	22	39777783	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	145932	39777783	11526783	4142	60736											
MGAT3	4248	broad.mit.edu	37	chr22	39883522	39883522	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaacaatgccccggtcaCgccccaggccagccccgagc	11	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39883522	T	T	39883522	3	4	54	1	0	0	0	0	1	0	0	0	9637	536	19	4	172	4	MGAT3	22	39883522	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	105739	39883522	11421044	4143	60737											
GRAP2	9402	broad.mit.edu	37	chr22	40335221	40335221	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggatcacctgtgcaaacagGacaggtcctcttgagaaggc	13	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40335221	T	T	40335221	1	4	54	0	1	0	0	0	0	0	0	0	6820	1189	41	3		3	GRAP2	22	40335221	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	451699	40335221	10969345	4144	60738											
GRAP2	9402	broad.mit.edu	37	chr22	40364155	40364155	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggaagctgtcggatcaccCcccgacccttcccctgcagc	9	20	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40364155	G	G	40364155	3	3	54	1	0	0	0	0	1	0	0	0	6820	623	22	4	587	4	GRAP2	22	40364155	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	28934	40364155	10940411	4145	60739											
L3MBTL2	83746	broad.mit.edu	37	chr22	41601247	41601247	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggaaccggcttttcctcctTcctgcagcgtgattggcccg	11	15	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41601247	G	G	41601247	1	3	54	0	1	0	0	0	0	0	0	0	8664	1798	62	5		5	L3MBTL2	22	41601247	5'Flank	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1237092	41601247	9703319	4146	60740											
MEI1	150365	broad.mit.edu	37	chr22	42177405	42177405	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagaaaagaggtgcagGggcccgggctgggacagtga	18	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42177405	T	T	42177405	1	4	54	0	1	0	0	0	0	0	0	0	9558	1247	43	2		2	MEI1	22	42177405	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	576158	42177405	9127161	4147	60741											
EFCAB6	64800	broad.mit.edu	37	chr22	44209473	44209473	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgccttctttattatagGcagtgctctaagtgtggtct	9	7	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44209473	T	T	44209473	1	4	54	0	1	0	0	0	0	0	0	0	4979	1218	42	3		3	EFCAB6	22	44209473	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2032068	44209473	7095093	4148	60742											
KIAA1644	85352	broad.mit.edu	37	chr22	44676667	44676667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggccagccctgcccaGtttacagatagggacactga	12	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44676667	T	T	44676667	1	4	54	0	1	0	0	0	0	0	0	0	8320	1044	36	3		3	KIAA1644	22	44676667	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	467194	44676667	6627899	4149	60743											
GTSE1	51512	broad.mit.edu	37	chr22	46724473	46724473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgaaggccctagagccGggacgcactccacccaggac	14	14	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46724473	T	T	46724473	1	4	54	0	1	0	0	0	0	0	0	0	6950	1131	39	1		1	GTSE1	22	46724473	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2047806	46724473	4580093	4150	60744											
CPT1B	1375	broad.mit.edu	37	chr22	51010693	51010693	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctgcattgagacccaacTggccattcttgaaggaaatg	10	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51010693	C	C	51010693	3	2	54	1	0	0	0	0	1	0	0	0	3864	1580	55	5	953	5	CPT1B	22	51010693	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	4286220	51010693	293873	4151	60745											
CD99	4267	broad.mit.edu	37	chrX	2658656	2658656	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcattcaatgaaattgAttgaattgattgagatttag	9	3	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2658656	G	G	2658656	1	3	54	0	1	0	0	0	0	0	0	0	3080	348	12	5		5	CD99	23	2658656	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08		2658656	152611904	4152	60746											
XG	7499	broad.mit.edu	37	chrX	2726175	2726175	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtgcccggcaatataagGccctccataagctctgctga	9	13	1	1	rs55840987		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2726175	A	A	2726175	1	1	54	0	1	0	0	0	0	0	0	0	17554	1218	42	4		4	XG	23	2726175	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	67519	2726175	152544385	4153	60747											
GYG2	8908	broad.mit.edu	37	chrX	2748287	2748287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgttcctactggcttgGgtgacagattggtctgcact	12	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2748287	T	T	2748287	1	4	54	0	1	0	0	0	0	0	0	0	6971	1247	43	2		2	GYG2	23	2748287	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22112	2748287	152522273	4154	60748											
NLGN4X	57502	broad.mit.edu	37	chrX	5821139	5821139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttttggcgaagttcgtcCagtaggtcatgaccacggcg	13	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5821139	A	A	5821139	3	1	54	1	0	0	0	0	1	0	0	0	10559	595	21	2	878	2	NLGN4X	23	5821139	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3072852	5821139	149449421	4155	60749											
NLGN4X	57502	broad.mit.edu	37	chrX	5934822	5934822	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccataaaatgaaatattacCgaaccataaaaaataaaaga	3	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5934822	G	G	5934822	1	3	54	0	1	0	0	0	0	0	0	0	10559	667	23	4		4	NLGN4X	23	5934822	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	113683	5934822	149335738	4156	60750											
NLGN4X	57502	broad.mit.edu	37	chrX	6023310	6023310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtttcaccatgttggcCaggctggtcttgaactcccg	13	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6023310	A	A	6023310	1	1	54	0	1	0	0	0	0	0	0	0	10559	609	21	2		2	NLGN4X	23	6023310	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	88488	6023310	149247250	4157	60751											
FAM9B	171483	broad.mit.edu	37	chrX	9080239	9080239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaatctactgtggatgGcaaccatgtggaaacagcat	11	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9080239	T	T	9080239	1	4	54	0	1	0	0	0	0	0	0	0	5717	1218	42	3		3	FAM9B	23	9080239	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3056929	9080239	146190321	4158	60752											
TBL1X	6907	broad.mit.edu	37	chrX	9464598	9464598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttttaaattaaaagtgGtcaaatgctggcagcctctt	8	8	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9464598	T	T	9464598	1	4	54	0	1	0	0	0	0	0	0	0	15761	1276	44	3		3	TBL1X	23	9464598	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	384359	9464598	145805962	4159	60753											
SHROOM2	357	broad.mit.edu	37	chrX	9864437	9864437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaagccagagaggccgcGgacagcgggccgcacatgtg	16	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9864437	T	T	9864437	3	4	54	1	0	0	0	0	1	0	0	0	14407	1116	39	1	2503	1	SHROOM2	23	9864437	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	399839	9864437	145406123	4160	60754											
CLCN4	1183	broad.mit.edu	37	chrX	10139558	10139558	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggcagccattagggccGggctgttaatgtcacgcaat	14	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10139558	A	A	10139558	1	1	54	0	1	0	0	0	0	0	0	0	3496	1131	39	4		4	CLCN4	23	10139558	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	275121	10139558	145131002	4161	60755											
CLCN4	1183	broad.mit.edu	37	chrX	10166219	10166219	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaactcattaagtttctcaAtaagactatgacgtaggtac	6	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10166219	G	G	10166219	1	3	54	0	1	0	0	0	0	0	0	0	3496	116	4	5		5	CLCN4	23	10166219	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	26661	10166219	145104341	4162	60756											
CLCN4	1183	broad.mit.edu	37	chrX	10174804	10174804	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaattggaggcgtgcttttCagtctagaagaggtgagaat	13	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10174804	T	T	10174804	2	4	54	1	0	0	0	0	0	0	0	1	3496	825	29	4		4	CLCN4	23	10174804	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8585	10174804	145095756	4163	60757											
CLCN4	1183	broad.mit.edu	37	chrX	10176537	10176537	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggatgacattccagaccgGccggctggtgtcggtgttta	15	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10176537	C	C	10176537	2	2	54	1	0	0	0	0	0	0	0	1	3496	1190	42	4		4	CLCN4	23	10176537	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1733	10176537	145094023	4164	60758											
MID1	4281	broad.mit.edu	37	chrX	10829015	10829015	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttataataccgaccctctCtatagtgtccctgtctgtgg	7	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10829015	T	T	10829015	1	4	54	0	1	0	0	0	0	0	0	0	9669	928	32	4		4	MID1	23	10829015	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	652478	10829015	144441545	4165	60759											
ARHGAP6	395	broad.mit.edu	37	chrX	11308505	11308505	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtataagacacaatacctGatttctaagggttgcggtgg	11	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11308505	A	A	11308505	1	1	54	0	1	0	0	0	0	0	0	0	889	1305	45	4		4	ARHGAP6	23	11308505	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	479490	11308505	143962055	4166	60760											
ARHGAP6	395	broad.mit.edu	37	chrX	11315125	11315125	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaagcctgtgtcgtccCagcagcctcccgcctggcca	10	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11315125	T	T	11315125	1	4	54	0	1	0	0	0	0	0	0	0	889	609	21	4		4	ARHGAP6	23	11315125	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6620	11315125	143955435	4167	60761											
AMELX	265	broad.mit.edu	37	chrX	11318867	11318867	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccattagcagacaataaaAtgcattaaaaatcattcatg	4	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11318867	T	T	11318867	1	4	54	0	1	0	0	0	0	0	0	0	569	116	4	5		5	AMELX	23	11318867	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	3742	11318867	143951693	4168	60762											
ARHGAP6	395	broad.mit.edu	37	chrX	11682953	11682953	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgcgcggacatctcgGcggggctgcacctgaggacc	16	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11682953	T	T	11682953	1	4	54	0	1	0	0	0	0	0	0	0	889	1218	42	3		3	ARHGAP6	23	11682953	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	364086	11682953	143587607	4169	60763											
MSL3	10943	broad.mit.edu	37	chrX	11790814	11790814	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttattgaagcactttgatCtctttttgaggtatttttat	6	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11790814	G	G	11790814	3	3	54	1	0	0	0	0	1	0	0	0	9973	913	32	4	1582	4	MSL3	23	11790814	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	107861	11790814	143479746	4170	60764											
FRMPD4	9758	broad.mit.edu	37	chrX	12277198	12277198	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagttcaatggcttaaccAaatactagtgtattttttac	5	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12277198	C	C	12277198	1	2	54	0	1	0	0	0	0	0	0	0	6119	145	5	5		5	FRMPD4	23	12277198	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	486384	12277198	142993362	4171	60765											
FRMPD4	9758	broad.mit.edu	37	chrX	12296363	12296363	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaagtcagaagaagtacCaagcctgttccttgacagga	9	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12296363	G	G	12296363	1	3	54	0	1	0	0	0	0	0	0	0	6119	609	21	4		4	FRMPD4	23	12296363	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	19165	12296363	142974197	4172	60766											
FRMPD4	9758	broad.mit.edu	37	chrX	12308717	12308717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaacatttcacatatctGgtacttttggaaaatgcaat	6	6	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12308717	T	T	12308717	1	4	54	0	1	0	0	0	0	0	0	0	6119	1363	47	2		2	FRMPD4	23	12308717	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12354	12308717	142961843	4173	60767											
FRMPD4	9758	broad.mit.edu	37	chrX	12712639	12712639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaactctggggctttgccCtgaattctttaacttgaaat	7	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12712639	A	A	12712639	1	1	54	0	1	0	0	0	0	0	0	0	6119	696	24	2		2	FRMPD4	23	12712639	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	403922	12712639	142557921	4174	60768											
FRMPD4	9758	broad.mit.edu	37	chrX	12738578	12738578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaatgacagacatcatGtagagatgtagtaaaaatga	10	3	1	5	rs28461856		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12738578	T	T	12738578	1	4	54	0	1	0	0	0	0	0	0	0	6119	1392	48	3		3	FRMPD4	23	12738578	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	25939	12738578	142531982	4175	60769											
EGFL6	25975	broad.mit.edu	37	chrX	13624346	13624346	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctgtgtgtgtgcctggggGatctagaacacttgccagag	15	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13624346	C	C	13624346	1	2	54	0	1	0	0	0	0	0	0	0	5003	1189	41	4		4	EGFL6	23	13624346	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	885768	13624346	141646214	4176	60770											
OFD1	8481	broad.mit.edu	37	chrX	13775792	13775792	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaggcctagctcagccGgctcctgaacttgcagtctt	9	13	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13775792	T	T	13775792	2	4	54	1	0	0	0	0	0	0	0	1	10933	1103	39	1		1	OFD1	23	13775792	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	151446	13775792	141494768	4177	60771											
GLRA2	2742	broad.mit.edu	37	chrX	14550390	14550390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaagaccatgactccaGgtctggaaaacaaccttcac	7	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14550390	T	T	14550390	3	4	54	1	0	0	0	0	1	0	0	0	6519	1000	35	2	104	2	GLRA2	23	14550390	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	774598	14550390	140720170	4178	60772											
GLRA2	2742	broad.mit.edu	37	chrX	14599492	14599492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgacaacaaattgctacGgatttcgaaaaatggcaaag	8	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14599492	T	T	14599492	3	4	54	1	0	0	0	0	1	0	0	0	6519	1116	39	1	544	1	GLRA2	23	14599492	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	49102	14599492	140671068	4179	60773											
ASB11	140456	broad.mit.edu	37	chrX	15311242	15311243	+	Intron	DNP	AT	CA	CA													tagaccattgattcatacagAttggagtgagcccatcaatg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	15311243	CA	CA	15311242	1	2	54	0	1	0	0	0	0	0	0	0	1019	348	12	5		5	ASB11	23	15311242	Intron	DNP	AT	TCGA-17-Z022-01A-01W-0746-08	711750	15311242	139959318	4180	60774											
BMX	660	broad.mit.edu	37	chrX	15564795	15564795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcagcctccagctaagcCcacacattgaaaggaaacaa	7	12	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15564795	A	A	15564795	1	1	54	0	1	0	0	0	0	0	0	0	1479	638	22	2		2	BMX	23	15564795	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	253553	15564795	139705765	4181	60775											
ACE2	59272	broad.mit.edu	37	chrX	15612862	15612862	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatttttctaacatcagcaTtactattttttcaaataaag	3	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15612862	G	G	15612862	1	3	54	0	1	0	0	0	0	0	0	0	137	1508	52	5		5	ACE2	23	15612862	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	48067	15612862	139657698	4182	60776											
TMEM27	57393	broad.mit.edu	37	chrX	15652592	15652592	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaccatcaccatcatcacCatcaccatcactatcaccat	0	18	7	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15652592	T	T	15652592	1	4	54	0	1	0	0	0	0	0	0	0	16275	609	21	4		4	TMEM27	23	15652592	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	39730	15652592	139617968	4183	60777											
TMEM27	57393	broad.mit.edu	37	chrX	15670841	15670841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacagagaaagctctgaaGgctggtttgatcatttgaaa	11	5	2	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15670841	T	T	15670841	1	4	54	0	1	0	0	0	0	0	0	0	16275	1015	35	2		2	TMEM27	23	15670841	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	18249	15670841	139599719	4184	60778											
SYAP1	94056	broad.mit.edu	37	chrX	16754429	16754429	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgctagataccacactgAgggtctgagaacacaaaaat	9	8	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16754429	T	T	16754429	1	4	54	0	1	0	0	0	0	0	0	0	15544	319	11	5		5	SYAP1	23	16754429	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1083588	16754429	138516131	4185	60779											
NHS	4810	broad.mit.edu	37	chrX	17624938	17624938	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgattcatactgagactcCtcatttagtgggctgagctt	9	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17624938	T	T	17624938	1	4	54	0	1	0	0	0	0	0	0	0	10506	696	24	4		4	NHS	23	17624938	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	870509	17624938	137645622	4186	60780											
NHS	4810	broad.mit.edu	37	chrX	17689835	17689835	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttgttaacccaggtccccGattcagaactgatcaccatt	6	13	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17689835	T	T	17689835	1	4	54	0	1	0	0	0	0	0	0	0	10506	1073	37	3		3	NHS	23	17689835	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	64897	17689835	137580725	4187	60781											
NHS	4810	broad.mit.edu	37	chrX	17704905	17704905	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcccaggacaggagtctgGatctggatagtgtgtctgga	17	7	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17704905	T	T	17704905	1	4	54	0	1	0	0	0	0	0	0	0	10506	1189	41	3		3	NHS	23	17704905	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15070	17704905	137565655	4188	60782											
NHS	4810	broad.mit.edu	37	chrX	17715173	17715173	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatactacagattttttcAgatagacacaaactacaaaa	3	7	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17715173	T	T	17715173	1	4	54	0	1	0	0	0	0	0	0	0	10506	203	7	5		5	NHS	23	17715173	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	10268	17715173	137555387	4189	60783											
BEND2	139105	broad.mit.edu	37	chrX	18192296	18192296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagaacagccttcaccaCcatctctgcccctttggtca	5	17	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18192296	A	A	18192296	3	1	54	1	0	0	0	0	1	0	0	0	1403	507	18	3	602	3	BEND2	23	18192296	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	477123	18192296	137078264	4190	60784											
BEND2	139105	broad.mit.edu	37	chrX	18221603	18221603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgctatctgtaatatGtgtcatttcaaactcaccca	5	9	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18221603	T	T	18221603	1	4	54	0	1	0	0	0	0	0	0	0	1403	1392	48	3		3	BEND2	23	18221603	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	29307	18221603	137048957	4191	60785											
SCML2	10389	broad.mit.edu	37	chrX	18265065	18265065	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttgtgctatactgaaccAcaatgctctaacacaaagtt	5	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18265065	T	T	18265065	1	4	54	0	1	0	0	0	0	0	0	0	14023	174	6	5		5	SCML2	23	18265065	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	43462	18265065	137005495	4192	60786											
CDKL5	6792	broad.mit.edu	37	chrX	18662808	18662808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtctgcaaaaagcccgcaGgtgctggctctcgaggggat	14	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18662808	T	T	18662808	1	4	54	0	1	0	0	0	0	0	0	0	3187	1015	35	2		2	CDKL5	23	18662808	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	397743	18662808	136607752	4193	60787											
PPEF1	5475	broad.mit.edu	37	chrX	18797363	18797363	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatgctgccatatttaattCctaatagagatagaagtgag	8	5	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18797363	A	A	18797363	1	1	54	0	1	0	0	0	0	0	0	0	12403	870	30	3		3	PPEF1	23	18797363	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	134555	18797363	136473197	4194	60788											
PHKA2	5256	broad.mit.edu	37	chrX	18912363	18912363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggccatctgcacgatctGgtccacgtggatgatgcccc	11	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18912363	T	T	18912363	3	4	54	1	0	0	0	0	1	0	0	0	11939	1357	47	2	219	2	PHKA2	23	18912363	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	115000	18912363	136358197	4195	60789											
PHKA2	5256	broad.mit.edu	37	chrX	18944448	18944448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacatcgaagcggtggaacCgcctgctttagtttttgtcc	10	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18944448	A	A	18944448	1	1	54	0	1	0	0	0	0	0	0	0	11939	667	23	1		1	PHKA2	23	18944448	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	32085	18944448	136326112	4196	60790											
GPR64	10149	broad.mit.edu	37	chrX	19013209	19013209	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaacagggcagtatgttGaagctcaaacgcaagagaca	11	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19013209	T	T	19013209	1	4	54	0	1	0	0	0	0	0	0	0	6770	1305	45	3		3	GPR64	23	19013209	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	68761	19013209	136257351	4197	60791											
GPR64	10149	broad.mit.edu	37	chrX	19028654	19028654	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgggagtaaaagacttggTgatattaatcatgtgagcag	12	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19028654	A	A	19028654	1	1	54	0	1	0	0	0	0	0	0	0	6770	1711	59	5		5	GPR64	23	19028654	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	15445	19028654	136241906	4198	60792											
GPR64	10149	broad.mit.edu	37	chrX	19063151	19063151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggcaggcagaagagtGggtcagagttatgccatgag	17	5	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19063151	T	T	19063151	1	4	54	0	1	0	0	0	0	0	0	0	6770	1363	47	2		2	GPR64	23	19063151	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	34497	19063151	136207409	4199	60793											
PDHA1	5160	broad.mit.edu	37	chrX	19372640	19372640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgggattgctctagcctGtaagtataatggaaaagatg	12	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19372640	T	T	19372640	3	4	54	1	0	0	0	0	1	0	0	0	11758	1377	48	3	703	3	PDHA1	23	19372640	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	309489	19372640	135897920	4200	60794											
SH3KBP1	30011	broad.mit.edu	37	chrX	19563889	19563889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagtttcggagactgcaaCatgccttggggattttgatg	12	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19563889	A	A	19563889	1	1	54	0	1	0	0	0	0	0	0	0	14368	493	17	3		3	SH3KBP1	23	19563889	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	191249	19563889	135706671	4201	60795											
SH3KBP1	30011	broad.mit.edu	37	chrX	19816686	19816686	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaacttaaacgttagctatGagacataaccatgactcact	5	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19816686	A	A	19816686	1	1	54	0	1	0	0	0	0	0	0	0	14368	1305	45	4		4	SH3KBP1	23	19816686	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	252797	19816686	135453874	4202	60796											
SH3KBP1	30011	broad.mit.edu	37	chrX	19817751	19817751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatgtatggcctacttaCaatctcagacaagtctgcgg	9	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19817751	A	A	19817751	1	1	54	0	1	0	0	0	0	0	0	0	14368	492	17	3		3	SH3KBP1	23	19817751	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1065	19817751	135452809	4203	60797											
CNKSR2	22866	broad.mit.edu	37	chrX	21544889	21544889	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaatagataattttaaaaTgataactatgtgtcattgtt	6	2	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21544889	A	A	21544889	1	1	54	0	1	0	0	0	0	0	0	0	3639	1479	51	5		5	CNKSR2	23	21544889	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1727138	21544889	133725671	4204	60798											
CNKSR2	22866	broad.mit.edu	37	chrX	21568627	21568627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtggaagacagtgtggCaattcctcaaggatctagaa	11	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21568627	A	A	21568627	1	1	54	0	1	0	0	0	0	0	0	0	3639	725	25	3		3	CNKSR2	23	21568627	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	23738	21568627	133701933	4205	60799											
CNKSR2	22866	broad.mit.edu	37	chrX	21591263	21591263	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttaaagctccagaatgatCtcctttgactccatgtctca	5	12	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21591263	A	A	21591263	1	1	54	0	1	0	0	0	0	0	0	0	3639	928	32	3		3	CNKSR2	23	21591263	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22636	21591263	133679297	4206	60800											
KLHL34	257240	broad.mit.edu	37	chrX	21674276	21674276	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggtcggcgccggggtcgTagcgctcgatctcagagaag	16	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21674276	C	C	21674276	3	2	54	1	0	0	0	0	1	0	0	0	8458	1638	57	5	307	5	KLHL34	23	21674276	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	83013	21674276	133596284	4207	60801											
KLHL34	257240	broad.mit.edu	37	chrX	21675988	21675989	+	5'UTR	DNP	GG	TT	TT													tcccggggcacaacactcccGggacccccgcgtaagccaca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21675989	TT	TT	21675988	1	4	54	0	1	0	0	0	0	0	0	0	8458	1131	39	1		1	KLHL34	23	21675988	5'UTR	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	1712	21675988	133594572	4208	60802											
PHEX	5251	broad.mit.edu	37	chrX	22129321	22129321	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactttataccctgagaGtgaaagtaaaatgttcactc	9	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22129321	T	T	22129321	1	4	54	0	1	0	0	0	0	0	0	0	11914	1044	36	3		3	PHEX	23	22129321	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	453333	22129321	133141239	4209	60803											
PHEX	5251	broad.mit.edu	37	chrX	22146407	22146407	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctggtcttgaactccAgacctcaggtgatccaaccg	10	13	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22146407	T	T	22146407	1	4	54	0	1	0	0	0	0	0	0	0	11914	203	7	5		5	PHEX	23	22146407	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	17086	22146407	133124153	4210	60804											
PHEX	5251	broad.mit.edu	37	chrX	22186304	22186304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttttgcccttcacagtGgcttgcatatagtagatatt	7	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22186304	T	T	22186304	1	4	54	0	1	0	0	0	0	0	0	0	11914	1363	47	2		2	PHEX	23	22186304	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	39897	22186304	133084256	4211	60805											
PTCHD1	139411	broad.mit.edu	37	chrX	23353297	23353297	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatcgtcacctccttccAgaaagccaacatgctggacc	8	15	2	1	rs138264321		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23353297	T	T	23353297	3	4	54	1	0	0	0	0	1	0	0	0	12838	188	7	5	307	5	PTCHD1	23	23353297	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1166993	23353297	131917263	4212	60806											
EIF2S3	1968	broad.mit.edu	37	chrX	24085946	24085946	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactcctgacctcaggtgatCcacccgcctcggcctcccaa	7	19	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24085946	T	T	24085946	1	4	54	0	1	0	0	0	0	0	0	0	5051	870	30	4		4	EIF2S3	23	24085946	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	732649	24085946	131184614	4213	60807											
PCYT1B	9468	broad.mit.edu	37	chrX	24609799	24609799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaccggtctcagcctccCaaagtgttgggattacaggc	10	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24609799	A	A	24609799	1	1	54	0	1	0	0	0	0	0	0	0	11705	609	21	2		2	PCYT1B	23	24609799	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	523853	24609799	130660761	4214	60808											
PCYT1B	9468	broad.mit.edu	37	chrX	24664349	24664349	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatctacctaaaagatcatGaccagggatagagagacgac	9	9	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24664349	T	T	24664349	1	4	54	0	1	0	0	0	0	0	0	0	11705	1305	45	3		3	PCYT1B	23	24664349	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	54550	24664349	130606211	4215	60809											
POLA1	5422	broad.mit.edu	37	chrX	24759680	24759680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggattcagtgtttgcttgGggtagttgttatatgataat	12	2	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24759680	T	T	24759680	1	4	54	0	1	0	0	0	0	0	0	0	12282	1247	43	2		2	POLA1	23	24759680	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	95331	24759680	130510880	4216	60810											
POLA1	5422	broad.mit.edu	37	chrX	24948463	24948463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactttctttaaaaaatgCtgcttgatttggaagttgaa	7	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24948463	A	A	24948463	1	1	54	0	1	0	0	0	0	0	0	0	12282	812	28	3		3	POLA1	23	24948463	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	188783	24948463	130322097	4217	60811											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997190	27997190	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgtgtgtgtggccaaGtgttaggaattaatctacac	12	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27997190	T	T	27997190	1	4	54	0	1	0	0	0	0	0	0	0	4310	1044	36	3		3	DCAF8L1	23	27997190	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	3048727	27997190	127273370	4218	60812											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998021	27998021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatatctcctctgtccccCtccatgaactggatgatctg	6	14	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27998021	A	A	27998021	3	1	54	1	0	0	0	0	1	0	0	0	4310	680	24	2	375	2	DCAF8L1	23	27998021	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	831	27998021	127272539	4219	60813											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998545	27998546	+	Missense_Mutation	DNP	GG	TT	TT													ggcatcttcacctgaagtgaGgaacttataaggagagtctg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	27998546	TT	TT	27998545	3	4	54	1	0	0	0	0	1	0	0	0	4310	1000	35	2	899	2	DCAF8L1	23	27998545	Missense_Mutation	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	524	27998545	127272015	4220	60814											
IL1RAPL1	11141	broad.mit.edu	37	chrX	28658310	28658310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgcatactatgaataggcTatttcattgtaccttaaggg	9	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28658310	A	A	28658310	1	1	54	0	1	0	0	0	0	0	0	0	7731	1537	53	5		5	IL1RAPL1	23	28658310	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	659765	28658310	126612250	4221	60815											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29417485	29417485	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actactattttaagttagttTttatgctacacattgatatt	4	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29417485	A	A	29417485	1	1	54	0	1	0	0	0	0	0	0	0	7731	1856	64	5		5	IL1RAPL1	23	29417485	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	759175	29417485	125853075	4222	60816											
MAGEB3	4114	broad.mit.edu	37	chrX	30254065	30254065	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcggggtcagaagagtacGctccatgcacgtgagaaacg	13	11	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30254065	C	C	30254065	2	2	54	1	0	0	0	0	0	0	0	1	9269	1074	38	4		4	MAGEB3	23	30254065	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	836580	30254065	125016495	4223	60817											
NR0B1	190	broad.mit.edu	37	chrX	30326950	30326950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaccccctggcctctgcgcGaagtaggagcggtcccacca	11	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30326950	T	T	30326950	3	4	54	1	0	0	0	0	1	0	0	0	10708	1049	37	3	889	3	NR0B1	23	30326950	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	72885	30326950	124943610	4224	60818											
GK	2710	broad.mit.edu	37	chrX	30712697	30712697	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatggagaattttttcagaaAttttttctagactgccttgc	7	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30712697	C	C	30712697	1	2	54	0	1	0	0	0	0	0	0	0	6484	116	4	5		5	GK	23	30712697	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	385747	30712697	124557863	4225	60819											
TAB3	257397	broad.mit.edu	37	chrX	30986939	30986939	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagggcaggtatccacaaTttcatgtacagcaaaaaggc	10	9	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30986939	C	C	30986939	1	2	54	0	1	0	0	0	0	0	0	0	15616	1508	52	5		5	TAB3	23	30986939	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	274242	30986939	124283621	4226	60820											
DMD	1756	broad.mit.edu	37	chrX	31159961	31159961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccaaagtatggaaggagCgcccagggagagtgaagaac	15	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31159961	A	A	31159961	1	1	54	0	1	0	0	0	0	0	0	0	4620	783	27	3		3	DMD	23	31159961	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	173022	31159961	124110599	4227	60821											
DMD	1756	broad.mit.edu	37	chrX	31201075	31201075	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggatgaaaggaaagaagGcaagatggcaaaggaggtgt	16	2	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31201075	C	C	31201075	1	2	54	0	1	0	0	0	0	0	0	0	4620	1218	42	4		4	DMD	23	31201075	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41114	31201075	124069485	4228	60822											
DMD	1756	broad.mit.edu	37	chrX	31222432	31222432	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgatcactgtatatatatGaagtgtgataacttttacat	6	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31222432	A	A	31222432	1	1	54	0	1	0	0	0	0	0	0	0	4620	1305	45	4		4	DMD	23	31222432	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	21357	31222432	124048128	4229	60823											
DMD	1756	broad.mit.edu	37	chrX	31397153	31397153	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggcattcttttacacatCtgcccctccccagtctctgt	5	17	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31397153	G	G	31397153	1	3	54	0	1	0	0	0	0	0	0	0	4620	928	32	4		4	DMD	23	31397153	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	174721	31397153	123873407	4230	60824											
DMD	1756	broad.mit.edu	37	chrX	31496456	31496456	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcctgctttcgtagaagccGagtgacattctgggctctct	11	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31496456	T	T	31496456	2	4	54	1	0	0	0	0	0	0	0	1	4620	1057	37	3		3	DMD	23	31496456	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	99303	31496456	123774104	4231	60825											
DMD	1756	broad.mit.edu	37	chrX	31544001	31544002	+	Intron	DNP	CC	AA	AA													taaaccttggataaaattccCctgtttcacactatcaccat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31544002	AA	AA	31544001	1	1	54	0	1	0	0	0	0	0	0	0	4620	638	22	2		2	DMD	23	31544001	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	47545	31544001	123726559	4232	60826											
DMD	1756	broad.mit.edu	37	chrX	31697745	31697745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatatagtagtaaatgctaGtctggaggagacattttaaa	9	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31697745	T	T	31697745	1	4	54	0	1	0	0	0	0	0	0	0	4620	1044	36	3		3	DMD	23	31697745	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	153744	31697745	123572815	4233	60827											
DMD	1756	broad.mit.edu	37	chrX	31817011	31817011	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggatgagactttttatccctCtaaatttccttagctcccct	5	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31817011	G	G	31817011	1	3	54	0	1	0	0	0	0	0	0	0	4620	928	32	4		4	DMD	23	31817011	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	119266	31817011	123453549	4234	60828											
DMD	1756	broad.mit.edu	37	chrX	31947414	31947414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactgtcagtacatgcctGgccactgaattaaatacttc	6	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31947414	T	T	31947414	1	4	54	0	1	0	0	0	0	0	0	0	4620	1363	47	2		2	DMD	23	31947414	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	130403	31947414	123323146	4235	60829											
DMD	1756	broad.mit.edu	37	chrX	32261091	32261092	+	Intron	DNP	GG	TT	TT													aggaacagaaggaaaggaaaGgaagaaggaaggaaggaagg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32261092	TT	TT	32261091	1	4	54	0	1	0	0	0	0	0	0	0	4620	1015	35	2		2	DMD	23	32261091	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	313677	32261091	123009469	4236	60830											
DMD	1756	broad.mit.edu	37	chrX	32486717	32486717	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctcaatttcttcaaattcTgattgatatttccggctaat	4	10	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32486717	A	A	32486717	2	1	54	1	0	0	0	0	0	0	0	1	4620	1567	55	5		5	DMD	23	32486717	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	225626	32486717	122783843	4237	60831											
DMD	1756	broad.mit.edu	37	chrX	32533498	32533498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgatgatttccagcgggaGttggtaaaaagttgattctg	12	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32533498	T	T	32533498	1	4	54	0	1	0	0	0	0	0	0	0	4620	1044	36	3		3	DMD	23	32533498	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	46781	32533498	122737062	4238	60832											
DMD	1756	broad.mit.edu	37	chrX	32538850	32538850	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactttgtttcctgggatcaCtttccaaataaactgcttgc	6	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32538850	T	T	32538850	1	4	54	0	1	0	0	0	0	0	0	0	4620	580	20	4		4	DMD	23	32538850	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5352	32538850	122731710	4239	60833											
DMD	1756	broad.mit.edu	37	chrX	33146313	33146313	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggaggctggctacacaccTtcataggaaagctttttgct	11	10	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33146313	A	A	33146313	1	1	54	0	1	0	0	0	0	0	0	0	4620	1624	56	5		5	DMD	23	33146313	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	607463	33146313	122124247	4240	60834											
FAM47B	170062	broad.mit.edu	37	chrX	34961919	34961919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctctgcccggagcctcCcgaggctggagtgtcccatc	12	16	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34961919	A	A	34961919	3	1	54	1	0	0	0	0	1	0	0	0	5621	623	22	2	973	2	FAM47B	23	34961919	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1815606	34961919	120308641	4241	60835											
CXorf22	170063	broad.mit.edu	37	chrX	35990041	35990041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagaaaaacatgattgcaGcttaatgttgacaccaaagc	7	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35990041	T	T	35990041	3	4	54	1	0	0	0	0	1	0	0	0	4135	971	34	3	2263	3	CXorf22	23	35990041	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1028122	35990041	119280519	4242	60836											
CXorf59	286464	broad.mit.edu	37	chrX	36103708	36103708	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactctggcttggatagttaGataaatgaacagatagatag	10	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36103708	T	T	36103708	1	4	54	0	1	0	0	0	0	0	0	0	4148	957	33	3		3	CXorf59	23	36103708	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	113667	36103708	119166852	4243	60837											
CXorf59	286464	broad.mit.edu	37	chrX	36156595	36156595	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacaggtgggtgcctttaTattaaacattctacaaacat	6	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36156595	A	A	36156595	1	1	54	0	1	0	0	0	0	0	0	0	4148	1421	49	5		5	CXorf59	23	36156595	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	52887	36156595	119113965	4244	60838											
FAM47C	442444	broad.mit.edu	37	chrX	37027040	37027040	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatacccctgtggggaatTctcccctcggcctcccgaga	9	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37027040	A	A	37027040	3	1	54	1	0	0	0	0	1	0	0	0	5622	1783	62	5	559	5	FAM47C	23	37027040	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	870445	37027040	118243520	4245	60839											
PRRG1	5638	broad.mit.edu	37	chrX	37265416	37265416	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttatctgatgtagccactCagcctctatcaatctgactg	7	12	5	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37265416	T	T	37265416	1	4	54	0	1	0	0	0	0	0	0	0	12711	841	29	4		4	PRRG1	23	37265416	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	238376	37265416	118005144	4246	60840											
CYBB	1536	broad.mit.edu	37	chrX	37663180	37663180	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagatgaagaagaagggGttcaaaatggaagtgggaca	14	4	1	4	rs139761069		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37663180	T	T	37663180	2	4	54	1	0	0	0	0	0	0	0	1	4166	1248	44	3		3	CYBB	23	37663180	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	397764	37663180	117607380	4247	60841											
SRPX	8406	broad.mit.edu	37	chrX	38013853	38013853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgggaaaaagaaaacCcaacaggggaagtatgagca	12	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38013853	A	A	38013853	1	1	54	0	1	0	0	0	0	0	0	0	15282	638	22	2		2	SRPX	23	38013853	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	350673	38013853	117256707	4248	60842											
SRPX	8406	broad.mit.edu	37	chrX	38031332	38031332	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaatgagaaaatcagatAttcagcatttcttagttttt	6	4	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38031332	T	T	38031332	1	4	54	0	1	0	0	0	0	0	0	0	15282	464	16	5		5	SRPX	23	38031332	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	17479	38031332	117239228	4249	60843											
TSPAN7	7102	broad.mit.edu	37	chrX	38517957	38517957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaagattcgttgttcccGcttagctgtcacttctggcc	8	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38517957	T	T	38517957	1	4	54	0	1	0	0	0	0	0	0	0	16777	1102	38	3		3	TSPAN7	23	38517957	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	486625	38517957	116752603	4250	60844											
USP9X	8239	broad.mit.edu	37	chrX	41057842	41057842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctacagtatatgagaaatgGagagcttccagctgaacagg	11	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41057842	T	T	41057842	3	4	54	1	0	0	0	0	1	0	0	0	17217	1174	41	3	4556	3	USP9X	23	41057842	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2539885	41057842	114212718	4251	60845											
CASK	8573	broad.mit.edu	37	chrX	41448845	41448845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttaattttgtcatacaGctaaaaagcaaagaagaaaa	7	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41448845	T	T	41448845	3	4	54	1	0	0	0	0	1	0	0	0	2691	985	34	3	1684	3	CASK	23	41448845	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	391003	41448845	113821715	4252	60846											
NDP	4693	broad.mit.edu	37	chrX	43833142	43833142	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacgattcggcagctgactGtgatgaagttgaaattttaa	11	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43833142	C	C	43833142	1	2	54	0	1	0	0	0	0	0	0	0	10345	1392	48	4		4	NDP	23	43833142	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2384297	43833142	111437418	4253	60847											
EFHC2	80258	broad.mit.edu	37	chrX	44062480	44062480	+	Intron	SNP	C	A	A													gaaagaaagtgcttgtcacaCttttcccacagctccaaccc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44062480	A	A	44062480	1	1	54	0	1	0	0	0	0	0	0	0	4987	580	20	3		3	EFHC2	23	44062480	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	229338	44062480	111208080	4254	60848	286	2									
EFHC2	80258	broad.mit.edu	37	chrX	44062489	44062489	+	Intron	SNP	C	A	A													tgcttgtcacacttttcccaCagctccaaccccactgaaag							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44062489	A	A	44062489	1	1	54	0	1	0	0	0	0	0	0	0	4987	493	17	3		3	EFHC2	23	44062489	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9	44062489	111208071	4255	60849	286	2									
ZNF673	55634	broad.mit.edu	37	chrX	46314696	46314696	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcttggattcttcatgctCgtgcttctgtctttctttgt	7	11	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46314696	T	T	46314696	1	4	54	0	1	0	0	0	0	0	0	0	18207	899	31	4		4	ZNF673	23	46314696	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2252207	46314696	108955864	4256	60850											
ZNF673	55634	broad.mit.edu	37	chrX	46315484	46315484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctcttctgaaatctaCtcttcactaagtccaaggcc	5	14	5	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46315484	T	T	46315484	1	4	54	0	1	0	0	0	0	0	0	0	18207	580	20	4		4	ZNF673	23	46315484	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	788	46315484	108955076	4257	60851											
SLC9A7	84679	broad.mit.edu	37	chrX	46494906	46494906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgcacctttactaaaaGtgggggttggcacacgcagg	12	9	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46494906	T	T	46494906	1	4	54	0	1	0	0	0	0	0	0	0	14833	1044	36	3		3	SLC9A7	23	46494906	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	179422	46494906	108775654	4258	60852											
CDK16	5127	broad.mit.edu	37	chrX	47084199	47084199	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctcccagacccttctcctGagccagctttaacctgcctc	5	19	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47084199	A	A	47084199	1	1	54	0	1	0	0	0	0	0	0	0	3162	1305	45	4		4	CDK16	23	47084199	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	589293	47084199	108186361	4259	60853											
SSX3	10214	broad.mit.edu	37	chrX	48206584	48206584	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actccgattctgccctatctCaggacctgcacacaccttcc	5	18	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48206584	T	T	48206584	1	4	54	0	1	0	0	0	0	0	0	0	15323	841	29	4		4	SSX3	23	48206584	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1122385	48206584	107063976	4260	60854											
SLC38A5	92745	broad.mit.edu	37	chrX	48319074	48319074	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagtgagggtcaccgcgagCagcacggccaggcgcacaca	14	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48319074	G	G	48319074	2	3	54	1	0	0	0	0	0	0	0	1	14721	697	25	4		4	SLC38A5	23	48319074	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	112490	48319074	106951486	4261	60855											
GRIPAP1	56850	broad.mit.edu	37	chrX	48837590	48837590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggccctacctccccCatgcctcagcctcctctccc	6	24	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48837590	A	A	48837590	1	1	54	0	1	0	0	0	0	0	0	0	6855	609	21	2		2	GRIPAP1	23	48837590	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	518516	48837590	106432970	4262	60856											
TFE3	7030	broad.mit.edu	37	chrX	48890882	48890882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagaggagaaatgcctgGgccgagactgcctggtgagc	16	9	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48890882	T	T	48890882	1	4	54	0	1	0	0	0	0	0	0	0	15923	1247	43	2		2	TFE3	23	48890882	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	53292	48890882	106379678	4263	60857											
PLP2	5355	broad.mit.edu	37	chrX	49028245	49028245	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcgccccggggccccCttcccggccagacggcgggc	13	21	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49028245	A	A	49028245	1	1	54	0	1	0	0	0	0	0	0	0	12200	696	24	2		2	PLP2	23	49028245	5'Flank	SNP	C	TCGA-17-Z022-01A-01W-0746-08	137363	49028245	106242315	4264	60858											
FOXP3	50943	broad.mit.edu	37	chrX	49109720	49109720	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacctcctagctagctccctGtcccctccccctacaaggtg	7	19	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49109720	C	C	49109720	1	2	54	0	1	0	0	0	0	0	0	0	6088	1392	48	4		4	FOXP3	23	49109720	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	81475	49109720	106160840	4265	60859											
GAGE10	643832	broad.mit.edu	37	chrX	49173871	49173871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtcttgctctgtccaccaGgctggagtgcagtggtggca	15	10	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49173871	A	A	49173871	1	1	54	0	1	0	0	0	0	0	0	0	6247	1015	35	4		4	GAGE10	23	49173871	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	64151	49173871	106096689	4266	60860											
PAGE1	8712	broad.mit.edu	37	chrX	49456125	49456125	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatcccaagaacattatttCaggagtctgttggcagaaga	10	7	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49456125	G	G	49456125	1	3	54	0	1	0	0	0	0	0	0	0	11483	841	29	4		4	PAGE1	23	49456125	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	282254	49456125	105814435	4267	60861											
USP27X	389856	broad.mit.edu	37	chrX	49646012	49646012	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaataagtattccttgtttGctgtggttaatcaccaagga	8	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49646012	C	C	49646012	3	2	54	1	0	0	0	0	1	0	0	0	17184	1319	46	4	1104	4	USP27X	23	49646012	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	189887	49646012	105624548	4268	60862											
CLCN5	1184	broad.mit.edu	37	chrX	49764796	49764796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatcctgcttttctctttcTttctctcatgtgcatacact	3	12	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49764796	A	A	49764796	1	1	54	0	1	0	0	0	0	0	0	0	3497	1624	56	5		5	CLCN5	23	49764796	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	118784	49764796	105505764	4269	60863											
AKAP4	8852	broad.mit.edu	37	chrX	49958251	49958251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccttggtgtgccttagCaacaccctcttcaggaccac	7	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49958251	A	A	49958251	3	1	54	1	0	0	0	0	1	0	0	0	453	709	25	3	1459	3	AKAP4	23	49958251	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	193455	49958251	105312309	4270	60864											
CCNB3	85417	broad.mit.edu	37	chrX	50052405	50052405	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacctctggagagaagtcGctcattatgaagccattgtc	9	10	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50052405	T	T	50052405	2	4	54	1	0	0	0	0	0	0	0	1	2944	1074	38	3		3	CCNB3	23	50052405	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	94154	50052405	105218155	4271	60865											
CCNB3	85417	broad.mit.edu	37	chrX	50088818	50088818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactagcttgccgtgtgaacCtgagcacatcacttttctct	7	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50088818	A	A	50088818	1	1	54	0	1	0	0	0	0	0	0	0	2944	696	24	2		2	CCNB3	23	50088818	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	36413	50088818	105181742	4272	60866											
CCNB3	85417	broad.mit.edu	37	chrX	50090716	50090716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatgtccaggagaaggcttCcaagctagctgctgcctcct	10	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50090716	A	A	50090716	3	1	54	1	0	0	0	0	1	0	0	0	2944	855	30	3	3936	3	CCNB3	23	50090716	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1898	50090716	105179844	4273	60867											
DGKK	139189	broad.mit.edu	37	chrX	50165245	50165245	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcagcttagctttatactGgtaataaggaacaagaccat	7	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50165245	A	A	50165245	1	1	54	0	1	0	0	0	0	0	0	0	4512	1363	47	4		4	DGKK	23	50165245	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	74529	50165245	105105315	4274	60868											
BMP15	9210	broad.mit.edu	37	chrX	50659413	50659413	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacttgtctccgagtactaCgcgatggtctcaattccccc	8	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50659413	T	T	50659413	3	4	54	1	0	0	0	0	1	0	0	0	1464	536	19	4	991	4	BMP15	23	50659413	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	494168	50659413	104611147	4275	60869											
MAGED1	9500	broad.mit.edu	37	chrX	51611413	51611413	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagaataagataggagtgGgggacaagaagggagaggag	20	1	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51611413	T	T	51611413	1	4	54	0	1	0	0	0	0	0	0	0	9275	1247	43	2		2	MAGED1	23	51611413	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	952000	51611413	103659147	4276	60870											
SMC1A	8243	broad.mit.edu	37	chrX	53423251	53423251	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acggtcactgcgcttctgttCaagcttggtctcaatggctg	11	11	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53423251	G	G	53423251	3	3	54	1	0	0	0	0	1	0	0	0	14895	835	29	4	975	4	SMC1A	23	53423251	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1811838	53423251	101847309	4277	60871											
RIBC1	158787	broad.mit.edu	37	chrX	53456805	53456805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatttctctgtgtagatgCgctcagtaaccagctgcgcc	9	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53456805	A	A	53456805	3	1	54	1	0	0	0	0	1	0	0	0	13461	768	27	3	597	3	RIBC1	23	53456805	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	33554	53456805	101813755	4278	60872											
HUWE1	10075	broad.mit.edu	37	chrX	53563456	53563456	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaaacttgaagtagctgaGgtggttggggttgcagtggg	18	4	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53563456	C	C	53563456	3	2	54	1	0	0	0	0	1	0	0	0	7531	1000	35	4	838	4	HUWE1	23	53563456	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	106651	53563456	101707104	4279	60873											
HUWE1	10075	broad.mit.edu	37	chrX	53589944	53589944	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagaggacttccctttccaGactgggtgcgtctaaagtag	11	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53589944	T	T	53589944	1	4	54	0	1	0	0	0	0	0	0	0	7531	957	33	3		3	HUWE1	23	53589944	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	26488	53589944	101680616	4280	60874											
PHF8	23133	broad.mit.edu	37	chrX	54029093	54029093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaaggcagtccacaggCgtcagcacagcatggatcca	12	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54029093	A	A	54029093	2	1	54	1	0	0	0	0	0	0	0	1	11935	755	27	3		3	PHF8	23	54029093	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	439149	54029093	101241467	4281	60875											
ITIH5L	347365	broad.mit.edu	37	chrX	54781460	54781460	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctcaccttttgctaaCcccacagaacttccttgaga	5	15	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54781460	T	T	54781460	2	4	54	1	0	0	0	0	0	0	0	1	7978	494	18	4		4	ITIH5L	23	54781460	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	752367	54781460	100489100	4282	60876											
ITIH5L	347365	broad.mit.edu	37	chrX	54819311	54819311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatcctcactggccatgcCttctcagtttcctctgttgg	7	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54819311	A	A	54819311	1	1	54	0	1	0	0	0	0	0	0	0	7978	696	24	2		2	ITIH5L	23	54819311	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37851	54819311	100451249	4283	60877											
MAGED2	10916	broad.mit.edu	37	chrX	54837133	54837133	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggttcagcatggccaacatCtattgagtcaggctgttact	11	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54837133	G	G	54837133	1	3	54	0	1	0	0	0	0	0	0	0	9276	928	32	4		4	MAGED2	23	54837133	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17822	54837133	100433427	4284	60878											
PFKFB1	5207	broad.mit.edu	37	chrX	54972820	54972820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaactcccagaggtgagGtgactgctgctggtggtgga	17	7	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54972820	T	T	54972820	1	4	54	0	1	0	0	0	0	0	0	0	11855	1276	44	3		3	PFKFB1	23	54972820	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	135687	54972820	100297740	4285	60879											
PAGE2B	389860	broad.mit.edu	37	chrX	55103864	55103864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcttttcaacaggaactgGctctgcttaagatagaggat	10	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55103864	T	T	55103864	3	4	54	1	0	0	0	0	1	0	0	0	11485	1203	42	3	236	3	PAGE2B	23	55103864	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	131044	55103864	100166696	4286	60880											
FAM123B	139285	broad.mit.edu	37	chrX	63411366	63411366	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttccctgccataagcctctcGagtataggcctccctggcgt	9	15	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63411366	C	C	63411366	3	2	54	1	0	0	0	0	1	0	0	0	5469	1066	37	4	1610	4	FAM123B	23	63411366	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	8307502	63411366	91859194	4287	60881											
MTMR8	55613	broad.mit.edu	37	chrX	63445199	63445199	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccatgactgacagcagtgAaaagtggcgtctgtgccttg	14	9	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63445199	G	G	63445199	3	3	54	1	0	0	0	0	1	0	0	0	10043	246	9	5		5	MTMR8	23	63445199	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	33833	63445199	91825361	4288	60882											
MTMR8	55613	broad.mit.edu	37	chrX	63616863	63616863	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatggcttagaagtgtgtgGcacctttccctgcccatttt	10	10	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63616863	A	A	63616863	1	1	54	0	1	0	0	0	0	0	0	0	10043	1218	42	4		4	MTMR8	23	63616863	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	171664	63616863	91653697	4289	60883											
LAS1L	81887	broad.mit.edu	37	chrX	64743931	64743931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggctagggctagtctccCtcaccagtcttggtgttggc	13	11	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64743931	A	A	64743931	1	1	54	0	1	0	0	0	0	0	0	0	8708	696	24	2		2	LAS1L	23	64743931	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1127068	64743931	90526629	4290	60884											
HEPH	9843	broad.mit.edu	37	chrX	65393450	65393450	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttccctatacccagatggCtcctctgggccactgaaagc	10	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65393450	T	T	65393450	2	4	54	1	0	0	0	0	0	0	0	1	7121	784	28	4		4	HEPH	23	65393450	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	649519	65393450	89877110	4291	60885											
HEPH	9843	broad.mit.edu	37	chrX	65420572	65420572	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatacctttgtcatggcCatcatgcagcctgacaacct	6	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65420572	A	A	65420572	2	1	54	1	0	0	0	0	0	0	0	1	7121	581	21	2		2	HEPH	23	65420572	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	27122	65420572	89849988	4292	60886											
EDA2R	60401	broad.mit.edu	37	chrX	65819742	65819742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactgggttacccaaaagCaggggctcttctcagctggg	13	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65819742	A	A	65819742	1	1	54	0	1	0	0	0	0	0	0	0	4944	725	25	3		3	EDA2R	23	65819742	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	399170	65819742	89450818	4293	60887											
AR	367	broad.mit.edu	37	chrX	66765999	66765999	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgcagcagggagctccggGacacttgaactgccgtctac	13	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66765999	A	A	66765999	2	1	54	1	0	0	0	0	0	0	0	1	838	1161	41	4		4	AR	23	66765999	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	946257	66765999	88504561	4294	60888											
AR	367	broad.mit.edu	37	chrX	66786719	66786719	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgttgtctctctgttttcTtgtttaatctttactttgat	6	6	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66786719	C	C	66786719	1	2	54	0	1	0	0	0	0	0	0	0	838	1624	56	5		5	AR	23	66786719	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	20720	66786719	88483841	4295	60889											
AR	367	broad.mit.edu	37	chrX	66843779	66843780	+	Intron	DNP	CA	TC	TC													gaaaagcgctttaattgactCacagttccacagtctgtaca							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	66843780	TC	TC	66843779	1	4	54	0	1	0	0	0	0	0	0	0	838	841	29	4		4	AR	23	66843779	Intron	DNP	CA	TCGA-17-Z022-01A-01W-0746-08	57060	66843779	88426781	4296	60890											
OPHN1	4983	broad.mit.edu	37	chrX	67537419	67537419	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaagaaagaaagaaagaGaaagaaagaaagagagagaa	12	0	0	9			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67537419	A	A	67537419	1	1	54	0	1	0	0	0	0	0	0	0	10969	957	33	4		4	OPHN1	23	67537419	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	693640	67537419	87733141	4297	60891											
STARD8	9754	broad.mit.edu	37	chrX	67933125	67933125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgccatgtaggtacacacGgtgtgaagaatgccgcctgg	14	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67933125	T	T	67933125	1	4	54	0	1	0	0	0	0	0	0	0	15381	1131	39	1		1	STARD8	23	67933125	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	395706	67933125	87337435	4298	60892											
EDA	1896	broad.mit.edu	37	chrX	68923351	68923351	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agacaacacgaggtagtgtgGagcaatacgctgttttaatg	12	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68923351	C	C	68923351	1	2	54	0	1	0	0	0	0	0	0	0	4943	1189	41	4		4	EDA	23	68923351	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	990226	68923351	86347209	4299	60893											
IGBP1	3476	broad.mit.edu	37	chrX	69353825	69353825	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggacgagttacagctgCcgcggctccccgagctgttc	13	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69353825	G	G	69353825	3	3	54	1	0	0	0	0	1	0	0	0	7637	739	26	4	30	4	IGBP1	23	69353825	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	430474	69353825	85916735	4300	60894											
AWAT1	158833	broad.mit.edu	37	chrX	69454541	69454541	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcctccctcaggctcccgaGaatcatggctcattccaagc	8	16	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69454541	A	A	69454541	1	1	54	0	1	0	0	0	0	0	0	0	1239	957	33	4		4	AWAT1	23	69454541	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	100716	69454541	85816019	4301	60895											
AWAT1	158833	broad.mit.edu	37	chrX	69455838	69455838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacctctctagcagagcCatgctagggaatccctgagt	9	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69455838	A	A	69455838	1	1	54	0	1	0	0	0	0	0	0	0	1239	609	21	2		2	AWAT1	23	69455838	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1297	69455838	85814722	4302	60896											
AWAT1	158833	broad.mit.edu	37	chrX	69460072	69460072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttatatggatgctctgCacaaactgttcgaccagcat	7	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69460072	A	A	69460072	3	1	54	1	0	0	0	0	1	0	0	0	1239	710	25	3	945	3	AWAT1	23	69460072	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4234	69460072	85810488	4303	60897											
P2RY4	5030	broad.mit.edu	37	chrX	69478986	69478986	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggcacgaggcagccggcTacgaccaaccaaactgccag	12	14	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69478986	A	A	69478986	2	1	54	1	0	0	0	0	0	0	0	1	11447	1509	53	5		5	P2RY4	23	69478986	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	18914	69478986	85791574	4304	60898											
ARR3	407	broad.mit.edu	37	chrX	69497148	69497148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggccttcccctgctccCattcttaagcaacaattgga	9	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69497148	A	A	69497148	1	1	54	0	1	0	0	0	0	0	0	0	983	609	21	2		2	ARR3	23	69497148	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	18162	69497148	85773412	4305	60899											
IL2RG	3561	broad.mit.edu	37	chrX	70327594	70327594	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggattggggttcaggtttCaggctttagggtgtaacatg	16	4	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70327594	T	T	70327594	3	4	54	1	0	0	0	0	1	0	0	0	7758	835	29	4	11	4	IL2RG	23	70327594	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	830446	70327594	84942966	4306	60900											
MED12	9968	broad.mit.edu	37	chrX	70341093	70341093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgcctgccaccttgccCcagttgtggttctcttcatc	7	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70341093	A	A	70341093	1	1	54	0	1	0	0	0	0	0	0	0	9521	638	22	2		2	MED12	23	70341093	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13499	70341093	84929467	4307	60901											
MED12	9968	broad.mit.edu	37	chrX	70347242	70347242	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgatggctcctctgcagagcGctgtatccttgcttatctct	9	13	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70347242	C	C	70347242	3	2	54	1	0	0	0	0	1	0	0	0	9521	1087	38	4	2988	4	MED12	23	70347242	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6149	70347242	84923318	4308	60902											
MED12	9968	broad.mit.edu	37	chrX	70353112	70353112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggtagggctggaaatgCggagtgcaaaagcctcaggt	17	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70353112	A	A	70353112	1	1	54	0	1	0	0	0	0	0	0	0	9521	783	27	3		3	MED12	23	70353112	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5870	70353112	84917448	4309	60903											
ZMYM3	9203	broad.mit.edu	37	chrX	70466194	70466194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtggcatcgaggtaccCtggctcacctgtttgacttc	11	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70466194	A	A	70466194	1	1	54	0	1	0	0	0	0	0	0	0	17827	696	24	2		2	ZMYM3	23	70466194	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	113082	70466194	84804366	4310	60904											
ZMYM3	9203	broad.mit.edu	37	chrX	70467981	70467981	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctccctggctgggagttaTagtgtcttctgcccttcccc	9	14	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70467981	C	C	70467981	1	2	54	0	1	0	0	0	0	0	0	0	17827	1421	49	5		5	ZMYM3	23	70467981	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1787	70467981	84802579	4311	60905											
ITGB1BP2	26548	broad.mit.edu	37	chrX	70521702	70521702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgggcagcactttgacCctaataccaaccttcctggt	9	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70521702	A	A	70521702	3	1	54	1	0	0	0	0	1	0	0	0	7962	623	22	2	48	2	ITGB1BP2	23	70521702	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	53721	70521702	84748858	4312	60906											
ITGB1BP2	26548	broad.mit.edu	37	chrX	70524766	70524766	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccctgaccccaatgcctTtgatttcctcattctctctt	3	17	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70524766	C	C	70524766	1	2	54	0	1	0	0	0	0	0	0	0	7962	1856	64	5		5	ITGB1BP2	23	70524766	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3064	70524766	84745794	4313	60907											
TAF1	6872	broad.mit.edu	37	chrX	70596935	70596935	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaagcaacacaggcagaatCtgaagatggaaagctgaccc	12	9	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70596935	T	T	70596935	3	4	54	1	0	0	0	0	1	0	0	0	15632	913	32	4	686	4	TAF1	23	70596935	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	72169	70596935	84673625	4314	60908											
OGT	8473	broad.mit.edu	37	chrX	70777184	70777184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaattggctctcagtgttGtaatagctttttaattgttg	9	4	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70777184	T	T	70777184	1	4	54	0	1	0	0	0	0	0	0	0	10942	1392	48	3		3	OGT	23	70777184	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	180249	70777184	84493376	4315	60909											
ACRC	93953	broad.mit.edu	37	chrX	70832327	70832327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatccaacaggatacacCcggagctgcccagggtcacc	11	14	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70832327	A	A	70832327	3	1	54	1	0	0	0	0	1	0	0	0	171	623	22	2	1915	2	ACRC	23	70832327	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	55143	70832327	84438233	4316	60910											
NHSL2	340527	broad.mit.edu	37	chrX	71359504	71359504	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagggagatatcatccccGggaaggccccctggactgat	13	13	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71359504	A	A	71359504	2	1	54	1	0	0	0	0	0	0	0	1	10507	1103	39	4		4	NHSL2	23	71359504	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	527177	71359504	83911056	4317	60911											
PIN4	5303	broad.mit.edu	37	chrX	71409829	71409829	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccacaccctgcccttttgtCgctataagctctgcagattc	6	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71409829	A	A	71409829	1	1	54	0	1	0	0	0	0	0	0	0	12026	899	31	3		3	PIN4	23	71409829	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	50325	71409829	83860731	4318	60912											
ERCC6L	54821	broad.mit.edu	37	chrX	71426904	71426904	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctttttgtccaattcgGtaaactctatccacagcttg	5	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71426904	T	T	71426904	4	4	54	1	0	0	0	0	0	1	0	0	5260	1256	44	3	2043	3	ERCC6L	23	71426904	Nonsense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	17075	71426904	83843656	4319	60913											
PIN4	5303	broad.mit.edu	37	chrX	71463675	71463675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgcactgtcttttaatcCttaacaacaaccttgttaga	4	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71463675	A	A	71463675	1	1	54	0	1	0	0	0	0	0	0	0	12026	696	24	2		2	PIN4	23	71463675	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	36771	71463675	83806885	4320	60914											
HDAC8	55869	broad.mit.edu	37	chrX	71766411	71766411	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgatctagacacattctGgaggttaggagtcaccgtgc	12	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71766411	A	A	71766411	1	1	54	0	1	0	0	0	0	0	0	0	7080	1363	47	4		4	HDAC8	23	71766411	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	302736	71766411	83504149	4321	60915											
PHKA1	5255	broad.mit.edu	37	chrX	71873386	71873386	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttatattcttgaacctgcaGataaaagaaaggcaggaaaa	8	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71873386	T	T	71873386	1	4	54	0	1	0	0	0	0	0	0	0	11938	957	33	3		3	PHKA1	23	71873386	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	106975	71873386	83397174	4322	60916											
CDX4	1046	broad.mit.edu	37	chrX	72667280	72667280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatatgcccagcatggatcCtcactggccgtctctgggag	11	13	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667280	A	A	72667280	3	1	54	1	0	0	0	0	1	0	0	0	3214	681	24	2	193	2	CDX4	23	72667280	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	793894	72667280	82603280	4323	60917											
SLC16A2	6567	broad.mit.edu	37	chrX	73664381	73664382	+	Intron	DNP	CC	AA	AA													taccactatctccctccctcCctgactttgggaaaggtgct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	73664382	AA	AA	73664381	1	1	54	0	1	0	0	0	0	0	0	0	14521	638	22	2		2	SLC16A2	23	73664381	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	997101	73664381	81606179	4324	60918											
KIAA2022	340533	broad.mit.edu	37	chrX	73964218	73964218	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggagacctctgggatacatCagggtctctttttgtgccac	11	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73964218	A	A	73964218	2	1	54	1	0	0	0	0	0	0	0	1	8339	813	29	3		3	KIAA2022	23	73964218	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	299837	73964218	81306342	4325	60919											
KIAA2022	340533	broad.mit.edu	37	chrX	73971599	73971599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttccttccttcccttcCtcttctttccttccctccct	0	21	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73971599	A	A	73971599	1	1	54	0	1	0	0	0	0	0	0	0	8339	696	24	2		2	KIAA2022	23	73971599	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7381	73971599	81298961	4326	60920											
KIAA2022	340533	broad.mit.edu	37	chrX	74137420	74137420	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggatgaaatacattaactCtctccaagatgtctaatact	5	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74137420	A	A	74137420	1	1	54	0	1	0	0	0	0	0	0	0	8339	928	32	3		3	KIAA2022	23	74137420	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	165821	74137420	81133140	4327	60921											
ABCB7	22	broad.mit.edu	37	chrX	74362047	74362047	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggcccttatataaaatggTgtagtatttatgtataactt	7	4	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74362047	A	A	74362047	1	1	54	0	1	0	0	0	0	0	0	0	46	1711	59	5		5	ABCB7	23	74362047	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	224627	74362047	80908513	4328	60922											
ZDHHC15	158866	broad.mit.edu	37	chrX	74670725	74670725	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtctttcttcattttcAtagcgctccttgtctgtgta	7	10	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74670725	T	T	74670725	4	4	54	1	0	0	0	0	0	1	0	0	17731	224	8	5	834	5	ZDHHC15	23	74670725	Nonsense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	308678	74670725	80599835	4329	60923											
ZDHHC15	158866	broad.mit.edu	37	chrX	74698892	74698892	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaattcaaaaatacaaagctCcatgacgaatttttattgtt	5	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74698892	A	A	74698892	1	1	54	0	1	0	0	0	0	0	0	0	17731	870	30	3		3	ZDHHC15	23	74698892	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	28167	74698892	80571668	4330	60924											
ATRX	546	broad.mit.edu	37	chrX	76872012	76872012	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagacatagtaagatgacTgaaataatcttctttggaaa	7	5	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76872012	A	A	76872012	1	1	54	0	1	0	0	0	0	0	0	0	1212	1595	55	5		5	ATRX	23	76872012	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2173120	76872012	78398548	4331	60925											
ATRX	546	broad.mit.edu	37	chrX	76889171	76889171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaatccagtttgtcacaCaaaagaactgtatgaagaaa	7	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76889171	A	A	76889171	3	1	54	1	0	0	0	0	1	0	0	0	1212	477	17	3	2711	3	ATRX	23	76889171	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	17159	76889171	78381389	4332	60926											
MAGT1	84061	broad.mit.edu	37	chrX	77126192	77126192	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttttagtttgctactctaGatcttacataagagcaatcc	5	9	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77126192	T	T	77126192	1	4	54	0	1	0	0	0	0	0	0	0	9288	957	33	3		3	MAGT1	23	77126192	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	237021	77126192	78144368	4333	60927											
MAGT1	84061	broad.mit.edu	37	chrX	77134662	77134662	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgggttcatgcaattcTcctgcctcagcctcccaagt	8	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77134662	A	A	77134662	1	1	54	0	1	0	0	0	0	0	0	0	9288	1566	54	5		5	MAGT1	23	77134662	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	8470	77134662	78135898	4334	60928											
COX7B	1349	broad.mit.edu	37	chrX	77155020	77155020	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaccaaagcagcagctGtattgccgcagttctagctt	10	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77155020	C	C	77155020	1	2	54	0	1	0	0	0	0	0	0	0	3814	1392	48	4		4	COX7B	23	77155020	5'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	20358	77155020	78115540	4335	60929											
ATP7A	538	broad.mit.edu	37	chrX	77227269	77227269	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcacattaaggtaagttactCtttggaaactgaagtcaaat	7	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77227269	T	T	77227269	1	4	54	0	1	0	0	0	0	0	0	0	1194	928	32	4		4	ATP7A	23	77227269	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	72249	77227269	78043291	4336	60930											
ATP7A	538	broad.mit.edu	37	chrX	77296122	77296122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatagccattgcagacaCagtgaagcctgaagcagaac	10	10	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77296122	A	A	77296122	3	1	54	1	0	0	0	0	1	0	0	0	1194	478	17	3	3762	3	ATP7A	23	77296122	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68853	77296122	77974438	4337	60931											
TAF9B	51616	broad.mit.edu	37	chrX	77394407	77394407	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgattcccatatccttcagGatctgtgccatcacctgtgg	9	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77394407	C	C	77394407	3	2	54	1	0	0	0	0	1	0	0	0	15655	1164	41	4	713	4	TAF9B	23	77394407	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	98285	77394407	77876153	4338	60932											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913599	77913599	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctggggctgctggggcctCctggagttcccaggctgctg	16	13	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77913599	A	A	77913599	4	1	54	1	0	0	0	0	0	1	0	0	17717	864	30	3	1112	3	ZCCHC5	23	77913599	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	519192	77913599	77356961	4339	60933											
BRWD3	254065	broad.mit.edu	37	chrX	80001181	80001181	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcagatgaagggaaaatatGaccaaagcgactacagccgg	12	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80001181	T	T	80001181	3	4	54	1	0	0	0	0	1	0	0	0	1535	1290	45	3	5070	3	BRWD3	23	80001181	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2087582	80001181	75269379	4340	60934											
POU3F4	5456	broad.mit.edu	37	chrX	82763695	82763695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccagcccggcaccgaaCccgtctatcacgtcaagcgg	13	16	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763695	A	A	82763695	3	1	54	1	0	0	0	0	1	0	0	0	12373	506	18	3	365	3	POU3F4	23	82763695	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2762514	82763695	72506865	4341	60935											
HDX	139324	broad.mit.edu	37	chrX	83695397	83695397	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtatatgtaaatattatgatCttgaaaaatgtcctttgaga	7	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83695397	A	A	83695397	1	1	54	0	1	0	0	0	0	0	0	0	7093	928	32	3		3	HDX	23	83695397	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	931702	83695397	71575163	4342	60936											
ZNF711	7552	broad.mit.edu	37	chrX	84525120	84525120	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaacaaaaagccaaaaagaGgagaaggggagaaaccaggc	12	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84525120	C	C	84525120	3	2	54	1	0	0	0	0	1	0	0	0	18244	1000	35	4	1098	4	ZNF711	23	84525120	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	829723	84525120	70745440	4343	60937											
POF1B	79983	broad.mit.edu	37	chrX	84586017	84586017	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatccgtattcttacggctCagatcagcaagcaactctcc	7	13	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84586017	A	A	84586017	2	1	54	1	0	0	0	0	0	0	0	1	12277	813	29	3		3	POF1B	23	84586017	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	60897	84586017	70684543	4344	60938											
POF1B	79983	broad.mit.edu	37	chrX	84617979	84617979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcctgcttcagtcttgGgaggaaaaatgtgtccagga	11	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84617979	T	T	84617979	1	4	54	0	1	0	0	0	0	0	0	0	12277	1247	43	2		2	POF1B	23	84617979	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31962	84617979	70652581	4345	60939											
CHM	1121	broad.mit.edu	37	chrX	85211370	85211370	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaatattcataaaatgtGatctcttcatatcctatgaa	3	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85211370	T	T	85211370	2	4	54	1	0	0	0	0	0	0	0	1	3381	1280	45	3		3	CHM	23	85211370	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	593391	85211370	70059190	4346	60940											
DACH2	117154	broad.mit.edu	37	chrX	86067837	86067837	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttaatctgtgaaccttctGatactaattttgtttttgca	5	7	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86067837	A	A	86067837	1	1	54	0	1	0	0	0	0	0	0	0	4254	1305	45	4		4	DACH2	23	86067837	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	856467	86067837	69202723	4347	60941											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177631	89177631	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcggcccctagccagaagCtcaccggaatagcccagccg	11	16	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177631	T	T	89177631	3	4	54	1	0	0	0	0	1	0	0	0	15950	797	28	4	549	4	TGIF2LX	23	89177631	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3109794	89177631	66092929	4348	60942											
PCDH11X	27328	broad.mit.edu	37	chrX	91090669	91090669	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcgctgattccaaacaagTccttgacaactgctatgcag	8	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91090669	C	C	91090669	3	2	54	1	0	0	0	0	1	0	0	0	11602	1667	58	5	168	5	PCDH11X	23	91090669	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1913038	91090669	64179891	4349	60943											
PCDH11X	27328	broad.mit.edu	37	chrX	91132420	91132420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggatgcggaccataatgGcagggtgacatgcttcacag	13	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91132420	T	T	91132420	3	4	54	1	0	0	0	0	1	0	0	0	11602	1203	42	3	1187	3	PCDH11X	23	91132420	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	41751	91132420	64138140	4350	60944											
PCDH11X	27328	broad.mit.edu	37	chrX	91368385	91368385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgtccacctcgactgattCtgtggatatagttttccctg	8	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91368385	A	A	91368385	1	1	54	0	1	0	0	0	0	0	0	0	11602	928	32	3		3	PCDH11X	23	91368385	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	235965	91368385	63902175	4351	60945											
NAP1L3	4675	broad.mit.edu	37	chrX	92928306	92928306	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatctgcttctgccatctTgcaagcctacaaactctacc	4	14	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92928306	A	A	92928306	1	1	54	0	1	0	0	0	0	0	0	0	10252	1827	63	5		5	NAP1L3	23	92928306	5'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1559921	92928306	62342254	4352	60946											
FAM133A	286499	broad.mit.edu	37	chrX	92960997	92960997	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctacattctcaccttcaAttcagtcttttaacccactg	2	14	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92960997	G	G	92960997	1	3	54	0	1	0	0	0	0	0	0	0	5489	116	4	5		5	FAM133A	23	92960997	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	32691	92960997	62309563	4353	60947											
DIAPH2	1730	broad.mit.edu	37	chrX	96319240	96319240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctaaaatttgtctcaacTgcttttcaaagactctcctg	4	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96319240	A	A	96319240	1	1	54	0	1	0	0	0	0	0	0	0	4559	1595	55	5		5	DIAPH2	23	96319240	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	3358243	96319240	58951320	4354	60948											
DIAPH2	1730	broad.mit.edu	37	chrX	96634023	96634023	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaacttctgatactgtaatGaactgaaagtcttgccaact	6	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96634023	A	A	96634023	1	1	54	0	1	0	0	0	0	0	0	0	4559	1305	45	4		4	DIAPH2	23	96634023	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	314783	96634023	58636537	4355	60949											
PCDH19	57526	broad.mit.edu	37	chrX	99605492	99605492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttatttacttttttatgCttttctcaattttccaaact	2	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99605492	A	A	99605492	1	1	54	0	1	0	0	0	0	0	0	0	11608	812	28	3		3	PCDH19	23	99605492	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2971469	99605492	55665068	4356	60950											
PCDH19	57526	broad.mit.edu	37	chrX	99632481	99632481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagattgtaaactctttgaGggcaaggattattcagcact	10	6	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99632481	T	T	99632481	1	4	54	0	1	0	0	0	0	0	0	0	11608	1015	35	2		2	PCDH19	23	99632481	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	26989	99632481	55638079	4357	60951											
TSPAN6	7105	broad.mit.edu	37	chrX	99888270	99888270	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttgcagtgagccgagaaCgcgccactgcactccagcct	11	15	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99888270	G	G	99888270	1	3	54	0	1	0	0	0	0	0	0	0	16776	551	19	4		4	TSPAN6	23	99888270	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	255789	99888270	55382290	4358	60952											
SRPX2	27286	broad.mit.edu	37	chrX	99919965	99919965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtaaatgctggttgctcCcagttgtcctggtgcaaaga	12	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99919965	A	A	99919965	1	1	54	0	1	0	0	0	0	0	0	0	15283	638	22	2		2	SRPX2	23	99919965	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	31695	99919965	55350595	4359	60953											
SRPX2	27286	broad.mit.edu	37	chrX	99920563	99920563	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggggccctgagcctggctcTcactttcccgaaggagagca	13	14	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99920563	A	A	99920563	2	1	54	1	0	0	0	0	0	0	0	1	15283	1538	54	5		5	SRPX2	23	99920563	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	598	99920563	55349997	4360	60954											
SYTL4	94121	broad.mit.edu	37	chrX	99943358	99943358	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagaacttaccatggaggagCcactttgcatgctgcttctg	10	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99943358	G	G	99943358	3	3	54	1	0	0	0	0	1	0	0	0	15604	739	26	4	1052	4	SYTL4	23	99943358	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22795	99943358	55327202	4361	60955											
SYTL4	94121	broad.mit.edu	37	chrX	99945204	99945204	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaatggaaaagaacagatgGataggtagaaggagtgagta	14	1	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99945204	C	C	99945204	1	2	54	0	1	0	0	0	0	0	0	0	15604	1189	41	4		4	SYTL4	23	99945204	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1846	99945204	55325356	4362	60956											
SYTL4	94121	broad.mit.edu	37	chrX	99956481	99956481	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcgcacaccttgcacctcCaggtaccattgctttcctgt	8	15	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99956481	G	G	99956481	3	3	54	1	0	0	0	0	1	0	0	0	15604	595	21	4	1776	4	SYTL4	23	99956481	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11277	99956481	55314079	4363	60957											
NOX1	27035	broad.mit.edu	37	chrX	100099015	100099015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcggtgacagcatttgcGcaggctctttgccaaagtcc	10	11	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100099015	T	T	100099015	3	4	54	1	0	0	0	0	1	0	0	0	10651	1087	38	3	77	3	NOX1	23	100099015	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	142534	100099015	55171545	4364	60958											
ARL13A	392509	broad.mit.edu	37	chrX	100243502	100243502	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctacaattgaaggagtGgcttatagactccagctcca	9	9	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100243502	T	T	100243502	1	4	54	0	1	0	0	0	0	0	0	0	930	1363	47	2		2	ARL13A	23	100243502	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	144487	100243502	55027058	4365	60959											
TRMT2B	79979	broad.mit.edu	37	chrX	100274614	100274614	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttcagcttgagcaactaGtgtttacacctttttttttt	5	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100274614	A	A	100274614	1	1	54	0	1	0	0	0	0	0	0	0	16691	1044	36	4		4	TRMT2B	23	100274614	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31112	100274614	54995946	4366	60960											
TMEM35	59353	broad.mit.edu	37	chrX	100349541	100349541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttaatgcagtaatttcCttacaatattctcactctag	5	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349541	A	A	100349541	1	1	54	0	1	0	0	0	0	0	0	0	16280	696	24	2		2	TMEM35	23	100349541	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	74927	100349541	54921019	4367	60961											
CENPI	2491	broad.mit.edu	37	chrX	100401040	100401040	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcatgtccaaagctaatGttatgttattgcttatcttg	8	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100401040	C	C	100401040	1	2	54	0	1	0	0	0	0	0	0	0	3263	1392	48	4		4	CENPI	23	100401040	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	51499	100401040	54869520	4368	60962											
DRP2	1821	broad.mit.edu	37	chrX	100496798	100496798	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggactctggagcagctctTggagattcaaggggcaatgg	16	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100496798	A	A	100496798	4	1	54	1	0	0	0	0	0	1	0	0	4804	1821	63	5	719	5	DRP2	23	100496798	Nonsense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	95758	100496798	54773762	4369	60963											
DRP2	1821	broad.mit.edu	37	chrX	100496812	100496812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcttggagattcaagggGcaatggaggaactaagcact	13	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100496812	T	T	100496812	3	4	54	1	0	0	0	0	1	0	0	0	4804	1203	42	3	733	3	DRP2	23	100496812	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14	100496812	54773748	4370	60964											
DRP2	1821	broad.mit.edu	37	chrX	100509264	100509264	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgttgagtttggcatatatCctcccagaccttcttctagg	9	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100509264	A	A	100509264	1	1	54	0	1	0	0	0	0	0	0	0	4804	870	30	3		3	DRP2	23	100509264	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	12452	100509264	54761296	4371	60965											
GLA	2717	broad.mit.edu	37	chrX	100653084	100653084	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcccacacttcaaagttgtCtccctgaaaaaccaagaaag	5	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100653084	T	T	100653084	3	4	54	1	0	0	0	0	1	0	0	0	6490	913	32	4	290	4	GLA	23	100653084	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	143820	100653084	54617476	4372	60966											
GLA	2717	broad.mit.edu	37	chrX	100662593	100662593	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcagcagagtcgggtggggGagctctccctcgggctcaac	16	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100662593	T	T	100662593	1	4	54	0	1	0	0	0	0	0	0	0	6490	1189	41	3		3	GLA	23	100662593	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	9509	100662593	54607967	4373	60967											
NXF5	55998	broad.mit.edu	37	chrX	101095097	101095097	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtctcagcatgaagccCcggactaaaggactcttctc	9	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101095097	T	T	101095097	1	4	54	0	1	0	0	0	0	0	0	0	10881	638	22	4		4	NXF5	23	101095097	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	432504	101095097	54175463	4374	60968											
NXF5	55998	broad.mit.edu	37	chrX	101096941	101096942	+	Frame_Shift_Del	DEL	GG	-	-													tgtcatactttatcccataaGgaatctaagcataaaaagaa							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101096942	-	-	101096941	7	5	54	1	0	1	0	1	0	0	0	0	10881	1000	35	0	1093	0	NXF5	23	101096941	Frame_Shift_Del	DEL	GG	TCGA-17-Z022-01A-01W-0746-08	1844	101096941	54173619	4375	60969											
ZMAT1	84460	broad.mit.edu	37	chrX	101167030	101167030	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcccttaccaagcaccagaGaattcacactggataaaccc	5	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101167030	A	A	101167030	1	1	54	0	1	0	0	0	0	0	0	0	17817	957	33	4		4	ZMAT1	23	101167030	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	70089	101167030	54103530	4376	60970											
BEX5	340542	broad.mit.edu	37	chrX	101408747	101408747	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttccatgaaagttgatgAaagtcctcttctgacagaaa	7	8	3	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101408747	C	C	101408747	1	2	54	0	1	0	0	0	0	0	0	0	1419	261	9	5		5	BEX5	23	101408747	3'UTR	SNP	A	TCGA-17-Z022-01A-01W-0746-08	241717	101408747	53861813	4377	60971											
BHLHB9	80823	broad.mit.edu	37	chrX	102004415	102004415	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattgcaaacctaggtcaggGgctgaggaggaggaggaaga	18	5	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102004415	C	C	102004415	2	2	54	1	0	0	0	0	0	0	0	1	1426	1219	43	4		4	BHLHB9	23	102004415	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	595668	102004415	53266145	4378	60972											
NXF3	56000	broad.mit.edu	37	chrX	102337945	102337945	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccatacctgggtaaaatggGagtctctggatatcaagagc	12	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102337945	T	T	102337945	2	4	54	1	0	0	0	0	0	0	0	1	10880	1161	41	3		3	NXF3	23	102337945	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	333530	102337945	52932615	4379	60973											
NXF3	56000	broad.mit.edu	37	chrX	102339093	102339093	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcagtcagtctgttccCcttacattgcttctctgaat	6	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102339093	T	T	102339093	1	4	54	0	1	0	0	0	0	0	0	0	10880	638	22	4		4	NXF3	23	102339093	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1148	102339093	52931467	4380	60974											
GLRA4	441509	broad.mit.edu	37	chrX	102967358	102967358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctcccctagaaagacacCaatgcctgattgttgaattc	7	11	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102967358	A	A	102967358	1	1	54	0	1	0	0	0	0	0	0	0	6521	609	21	2		2	GLRA4	23	102967358	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	628265	102967358	52303202	4381	60975											
TMEM31	203562	broad.mit.edu	37	chrX	102968620	102968620	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaacatccagcgacagaacGatcaaccttcttgaagtcct	6	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102968620	C	C	102968620	2	2	54	1	0	0	0	0	0	0	0	1	16278	1045	37	4		4	TMEM31	23	102968620	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1262	102968620	52301940	4382	60976											
RAB9B	51209	broad.mit.edu	37	chrX	103068155	103068155	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagcacgtccagcatcagTtttattgtctataaaaagaa	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103068155	G	G	103068155	1	3	54	0	1	0	0	0	0	0	0	0	13067	1740	60	5		5	RAB9B	23	103068155	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	99535	103068155	52202405	4383	60977											
TMSB15B	286527	broad.mit.edu	37	chrX	103216887	103216887	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcttgacacaacactaaGcttctcctggatctttgaaa	7	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103216887	T	T	103216887	1	4	54	0	1	0	0	0	0	0	0	0	16379	986	34	3		3	TMSB15B	23	103216887	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	148732	103216887	52053673	4384	60978											
ESX1	80712	broad.mit.edu	37	chrX	103498819	103498819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgaactgggcgcctccGgggcaagccacttaccgcgc	15	14	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103498819	T	T	103498819	1	4	54	0	1	0	0	0	0	0	0	0	5305	1131	39	1		1	ESX1	23	103498819	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	281932	103498819	51771741	4385	60979											
IL1RAPL2	26280	broad.mit.edu	37	chrX	103882481	103882481	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtctgtgtgtgtgtgtgtgtg	20	1	1	0	rs58410384		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103882481	C	C	103882481	1	2	54	0	1	0	0	0	0	0	0	0	7732	1392	48	4		4	IL1RAPL2	23	103882481	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	383662	103882481	51388079	4386	60980											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104026759	104026759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgctggcaccttgatctTggatttctcagccttcagaa	8	11	4	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104026759	A	A	104026759	1	1	54	0	1	0	0	0	0	0	0	0	7732	1827	63	5		5	IL1RAPL2	23	104026759	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	144278	104026759	51243801	4387	60981											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104274650	104274650	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgtgagatggtatctcAttgtggttttgatttgcatt	12	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104274650	T	T	104274650	1	4	54	0	1	0	0	0	0	0	0	0	7732	232	8	5		5	IL1RAPL2	23	104274650	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	247891	104274650	50995910	4388	60982											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104478349	104478349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatatcttctagtcagttGcagcataaaactgctctgtg	7	9	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104478349	T	T	104478349	1	4	54	0	1	0	0	0	0	0	0	0	7732	1334	46	3		3	IL1RAPL2	23	104478349	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	203699	104478349	50792211	4389	60983											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104512090	104512090	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgcaagccaaaaatgtGgagaagcataataatacaga	10	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104512090	C	C	104512090	3	2	54	1	0	0	0	0	1	0	0	0	7732	1357	47	4	577	4	IL1RAPL2	23	104512090	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	33741	104512090	50758470	4390	60984											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104651436	104651436	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaactgtgtaattttgagGatccttctggtcttaaagcc	9	7	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104651436	T	T	104651436	1	4	54	0	1	0	0	0	0	0	0	0	7732	1189	41	3		3	IL1RAPL2	23	104651436	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	139346	104651436	50619124	4391	60985											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104761919	104761919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaggacagatagatagCaaagaactgaaaaataaaga	11	3	0	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104761919	A	A	104761919	1	1	54	0	1	0	0	0	0	0	0	0	7732	725	25	3		3	IL1RAPL2	23	104761919	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	110483	104761919	50508641	4392	60986											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104761938	104761938	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaagaactgaaaaataaaGaacaaggagaaagggatgcc	11	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104761938	A	A	104761938	1	1	54	0	1	0	0	0	0	0	0	0	7732	957	33	4		4	IL1RAPL2	23	104761938	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	19	104761938	50508622	4393	60987											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104772715	104772715	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattagttagcatgtgtttcAtaagaatcaagaccttctcc	6	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104772715	G	G	104772715	1	3	54	0	1	0	0	0	0	0	0	0	7732	232	8	5		5	IL1RAPL2	23	104772715	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	10777	104772715	50497845	4394	60988											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104857248	104857248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagtgccttgaagggaaGgacacggtccaggtaggacc	14	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104857248	T	T	104857248	1	4	54	0	1	0	0	0	0	0	0	0	7732	1015	35	2		2	IL1RAPL2	23	104857248	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	84533	104857248	50413312	4395	60989											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104893989	104893989	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtaaaagaccagcattccGagtacagcagattatgatat	9	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104893989	A	A	104893989	1	1	54	0	1	0	0	0	0	0	0	0	7732	1073	37	4		4	IL1RAPL2	23	104893989	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	36741	104893989	50376571	4396	60990											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104950038	104950038	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagctttatagaagcttaTaaaggaaagggcagggaaca	11	5	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104950038	A	A	104950038	1	1	54	0	1	0	0	0	0	0	0	0	7732	1421	49	5		5	IL1RAPL2	23	104950038	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	56049	104950038	50320522	4397	60991											
NRK	203447	broad.mit.edu	37	chrX	105088020	105088020	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtctgtgtgtGtgtgtgtgtgtgtgtctgtg	19	2	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105088020	C	C	105088020	1	2	54	0	1	0	0	0	0	0	0	0	10750	1392	48	4		4	NRK	23	105088020	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	137982	105088020	50182540	4398	60992											
CXorf57	55086	broad.mit.edu	37	chrX	105910590	105910590	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggttaccactctgttgcccAggctggagtacagtgctaca	11	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105910590	T	T	105910590	1	4	54	0	1	0	0	0	0	0	0	0	4146	203	7	5		5	CXorf57	23	105910590	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	822570	105910590	49359970	4399	60993											
RNF128	79589	broad.mit.edu	37	chrX	105937328	105937328	+	Frame_Shift_Del	DEL	G	-	-													ttttcaatgagtgcctatgtGactgtgacttattacaatga							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105937328	-	-	105937328	7	5	54	1	0	1	0	1	0	0	0	0	13547	1277	45	0	98	0	RNF128	23	105937328	Frame_Shift_Del	DEL	G	TCGA-17-Z022-01A-01W-0746-08	26738	105937328	49333232	4400	60994											
MORC4	79710	broad.mit.edu	37	chrX	106228602	106228602	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catattactgctatagaaggAggaaaggtgaaaaatggaga	12	3	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106228602	T	T	106228602	1	4	54	0	1	0	0	0	0	0	0	0	9798	319	11	5		5	MORC4	23	106228602	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	291274	106228602	49041958	4401	60995											
NUP62CL	54830	broad.mit.edu	37	chrX	106415552	106415552	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtgacaaagtaagactGtatcttaaaaaaaaagggag	11	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106415552	C	C	106415552	1	2	54	0	1	0	0	0	0	0	0	0	10864	1392	48	4		4	NUP62CL	23	106415552	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	186950	106415552	48855008	4402	60996											
MID2	11043	broad.mit.edu	37	chrX	107152673	107152673	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttgatcagtattctgttGactactagagggaaactctg	10	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107152673	T	T	107152673	1	4	54	0	1	0	0	0	0	0	0	0	9671	1305	45	3		3	MID2	23	107152673	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	737121	107152673	48117887	4403	60997											
MID2	11043	broad.mit.edu	37	chrX	107169511	107169511	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgccactattgggaggtGgtcatgggttcctcaacatg	14	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107169511	T	T	107169511	2	4	54	1	0	0	0	0	0	0	0	1	9671	1335	47	2		2	MID2	23	107169511	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16838	107169511	48101049	4404	60998											
TEX13B	56156	broad.mit.edu	37	chrX	107224269	107224269	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcttgggggctcttgagGgtctattccctgggcctcca	13	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107224269	T	T	107224269	1	4	54	0	1	0	0	0	0	0	0	0	15899	1247	43	2		2	TEX13B	23	107224269	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	54758	107224269	48046291	4405	60999											
TEX13B	56156	broad.mit.edu	37	chrX	107224968	107224968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggctggtctcggttagCtgcaactggaaggtcgcctc	14	11	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107224968	A	A	107224968	3	1	54	1	0	0	0	0	1	0	0	0	15899	796	28	3	556	3	TEX13B	23	107224968	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	699	107224968	48045592	4406	61000											
TEX13B	56156	broad.mit.edu	37	chrX	107225336	107225336	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgccggaacccactactggGgtcctcaggtctcaaggcca	12	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107225336	C	C	107225336	3	2	54	1	0	0	0	0	1	0	0	0	15899	1232	43	4	924	4	TEX13B	23	107225336	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	368	107225336	48045224	4407	61001											
VSIG1	340547	broad.mit.edu	37	chrX	107320447	107320447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgccccagagcctgccCcaggatcagagcctatggca	11	16	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107320447	A	A	107320447	3	1	54	1	0	0	0	0	1	0	0	0	17349	623	22	2	1138	2	VSIG1	23	107320447	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	95111	107320447	47950113	4408	61002											
ATG4A	115201	broad.mit.edu	37	chrX	107361949	107361949	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatctggaatattctctcCtcttgtctctgctcacccaa	5	14	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107361949	T	T	107361949	1	4	54	0	1	0	0	0	0	0	0	0	1100	696	24	4		4	ATG4A	23	107361949	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	41502	107361949	47908611	4409	61003											
COL4A6	1288	broad.mit.edu	37	chrX	107417517	107417517	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggaaagggtgggaagaCctgtcagactcaaggagaga	15	6	3	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107417517	G	G	107417517	1	3	54	0	1	0	0	0	0	0	0	0	3727	522	18	4		4	COL4A6	23	107417517	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	55568	107417517	47853043	4410	61004											
COL4A6	1288	broad.mit.edu	37	chrX	107422067	107422067	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctagtaagccaggcttccCgtgcacacctgataaaagaa	9	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107422067	G	G	107422067	3	3	54	1	0	0	0	0	1	0	0	0	3727	652	23	4	2786	4	COL4A6	23	107422067	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4550	107422067	47848493	4411	61005											
COL4A6	1288	broad.mit.edu	37	chrX	107442344	107442344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaagagaaagaaggtaagGggcaaatctgtcaggttggg	16	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107442344	T	T	107442344	1	4	54	0	1	0	0	0	0	0	0	0	3727	1247	43	2		2	COL4A6	23	107442344	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	20277	107442344	47828216	4412	61006											
COL4A6	1288	broad.mit.edu	37	chrX	107471004	107471004	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtctgttctatcagtaactCcaaaagggaggagagtataa	10	6	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107471004	A	A	107471004	1	1	54	0	1	0	0	0	0	0	0	0	3727	870	30	3		3	COL4A6	23	107471004	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	28660	107471004	47799556	4413	61007											
COL4A6	1288	broad.mit.edu	37	chrX	107471986	107471986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatggaggtaaccagcccCgtgattcaattacctcccat	8	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107471986	A	A	107471986	1	1	54	0	1	0	0	0	0	0	0	0	3727	667	23	1		1	COL4A6	23	107471986	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	982	107471986	47798574	4414	61008											
COL4A6	1288	broad.mit.edu	37	chrX	107509001	107509001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagagagagataatggcaCgggatgaagttggaagagaa	16	2	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107509001	A	A	107509001	1	1	54	0	1	0	0	0	0	0	0	0	3727	551	19	3		3	COL4A6	23	107509001	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37015	107509001	47761559	4415	61009											
COL4A5	1287	broad.mit.edu	37	chrX	107760789	107760789	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgccttgtgagtacctcatCattggaggtgttaataaggt	11	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107760789	A	A	107760789	1	1	54	0	1	0	0	0	0	0	0	0	3726	841	29	3		3	COL4A5	23	107760789	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	251788	107760789	47509771	4416	61010											
COL4A5	1287	broad.mit.edu	37	chrX	107838784	107838784	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcattggaactggtatttCagggcctccaggtcaacctg	11	11	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107838784	T	T	107838784	3	4	54	1	0	0	0	0	1	0	0	0	3726	838	29	4	1555	4	COL4A5	23	107838784	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	77995	107838784	47431776	4417	61011											
COL4A5	1287	broad.mit.edu	37	chrX	107917678	107917678	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatttttggaaagccacagTagcagtgttaacatgatgtc	9	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107917678	A	A	107917678	1	1	54	0	1	0	0	0	0	0	0	0	3726	1653	57	5		5	COL4A5	23	107917678	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	78894	107917678	47352882	4418	61012											
COL4A5	1287	broad.mit.edu	37	chrX	107931004	107931005	+	Intron	DNP	GG	TT	TT													ttgggttctagagtagccttGgccaaagtgcctctctctat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107931005	TT	TT	107931004	1	4	54	0	1	0	0	0	0	0	0	0	3726	1363	47	2		2	COL4A5	23	107931004	Intron	DNP	GG	TCGA-17-Z022-01A-01W-0746-08	13326	107931004	47339556	4419	61013											
COL4A5	1287	broad.mit.edu	37	chrX	107938162	107938162	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcatgatggtattttacaCtcttccttgcatttgtcatc	5	10	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107938162	G	G	107938162	1	3	54	0	1	0	0	0	0	0	0	0	3726	580	20	4		4	COL4A5	23	107938162	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7158	107938162	47332398	4420	61014											
COL4A5	1287	broad.mit.edu	37	chrX	107938178	107938178	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacactcttccttgcatttgTcatcatagctgactgtccat	5	12	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107938178	G	G	107938178	1	3	54	0	1	0	0	0	0	0	0	0	3726	1682	58	5		5	COL4A5	23	107938178	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	16	107938178	47332382	4421	61015											
COL4A5	1287	broad.mit.edu	37	chrX	107938697	107938697	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttatagctttaattcaggTccaaagcttccttcagagat	7	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107938697	C	C	107938697	1	2	54	0	1	0	0	0	0	0	0	0	3726	1682	58	5		5	COL4A5	23	107938697	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	519	107938697	47331863	4422	61016											
IRS4	8471	broad.mit.edu	37	chrX	107976646	107976646	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtatagctcttaaaagatCtgagaggtcgtttgctggat	12	5	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107976646	A	A	107976646	3	1	54	1	0	0	0	0	1	0	0	0	7912	913	32	3	848	3	IRS4	23	107976646	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	37949	107976646	47293914	4423	61017											
ACSL4	2182	broad.mit.edu	37	chrX	108924061	108924061	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttttgaggagaaatggagGgaaaatcttaatcatatatg	10	2	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108924061	C	C	108924061	1	2	54	0	1	0	0	0	0	0	0	0	179	1247	43	4		4	ACSL4	23	108924061	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	947415	108924061	46346499	4424	61018											
TMEM164	84187	broad.mit.edu	37	chrX	109324810	109324810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactccagagcccatgctGctaatcatgaccttgtgttg	8	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109324810	T	T	109324810	1	4	54	0	1	0	0	0	0	0	0	0	16202	1334	46	3		3	TMEM164	23	109324810	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	400749	109324810	45945750	4425	61019											
TMEM164	84187	broad.mit.edu	37	chrX	109372497	109372497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagtagattttccttatcGtcctagggggcaggagtaat	13	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109372497	T	T	109372497	1	4	54	0	1	0	0	0	0	0	0	0	16202	1160	40	3		3	TMEM164	23	109372497	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	47687	109372497	45898063	4426	61020											
TMEM164	84187	broad.mit.edu	37	chrX	109383937	109383937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacctgtgttgcttaaagCatttttattacttttgactt	6	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109383937	A	A	109383937	1	1	54	0	1	0	0	0	0	0	0	0	16202	725	25	3		3	TMEM164	23	109383937	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11440	109383937	45886623	4427	61021											
AMMECR1	9949	broad.mit.edu	37	chrX	109441769	109441769	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggaataatggttgtatggCggaaggggatgcccaatgcc	15	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109441769	G	G	109441769	2	3	54	1	0	0	0	0	0	0	0	1	578	755	27	4		4	AMMECR1	23	109441769	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	57832	109441769	45828791	4428	61022											
AMMECR1	9949	broad.mit.edu	37	chrX	109590043	109590043	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaattgtttcaagtctgcaGctgcctgggaaacttttacg	10	8	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109590043	C	C	109590043	1	2	54	0	1	0	0	0	0	0	0	0	578	986	34	4		4	AMMECR1	23	109590043	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	148274	109590043	45680517	4429	61023											
CHRDL1	91851	broad.mit.edu	37	chrX	109963236	109963236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatacctgaaatagagcaGggactcaaaacacggcatgt	9	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109963236	T	T	109963236	1	4	54	0	1	0	0	0	0	0	0	0	3404	1015	35	2		2	CHRDL1	23	109963236	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	373193	109963236	45307324	4430	61024											
PAK3	5063	broad.mit.edu	37	chrX	110202717	110202717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctggtccttcaccctcGtgtacatcacagtgctggct	8	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110202717	T	T	110202717	1	4	54	0	1	0	0	0	0	0	0	0	11496	1160	40	3		3	PAK3	23	110202717	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	239481	110202717	45067843	4431	61025											
PAK3	5063	broad.mit.edu	37	chrX	110214289	110214289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaccattgtgatgttaGgtttagctttagtttttaaa	7	5	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110214289	T	T	110214289	1	4	54	0	1	0	0	0	0	0	0	0	11496	1015	35	2		2	PAK3	23	110214289	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	11572	110214289	45056271	4432	61026											
PAK3	5063	broad.mit.edu	37	chrX	110226378	110226378	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatcaatctgcagtcttctGctattagatgttaatgcaat	6	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110226378	C	C	110226378	1	2	54	0	1	0	0	0	0	0	0	0	11496	1334	46	4		4	PAK3	23	110226378	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	12089	110226378	45044182	4433	61027											
PAK3	5063	broad.mit.edu	37	chrX	110226557	110226557	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctactgaggagagggttTgggtagagtgatggcgttct	16	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110226557	G	G	110226557	1	3	54	0	1	0	0	0	0	0	0	0	11496	1827	63	5		5	PAK3	23	110226557	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	179	110226557	45044003	4434	61028											
PAK3	5063	broad.mit.edu	37	chrX	110245649	110245649	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatgcaggacacacatgcTctgaaaaggcagatttaggt	13	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110245649	C	C	110245649	1	2	54	0	1	0	0	0	0	0	0	0	11496	1566	54	5		5	PAK3	23	110245649	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	19092	110245649	45024911	4435	61029											
PAK3	5063	broad.mit.edu	37	chrX	110251647	110251647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgagatttacttagcagCcaagcacactttgcagcctc	7	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110251647	A	A	110251647	1	1	54	0	1	0	0	0	0	0	0	0	11496	754	26	3		3	PAK3	23	110251647	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	5998	110251647	45018913	4436	61030											
PAK3	5063	broad.mit.edu	37	chrX	110295480	110295480	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaagaagcaggcaagcatCagaggtgaggaacaacctat	12	7	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110295480	A	A	110295480	1	1	54	0	1	0	0	0	0	0	0	0	11496	841	29	3		3	PAK3	23	110295480	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	43833	110295480	44975080	4437	61031											
PAK3	5063	broad.mit.edu	37	chrX	110296356	110296356	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtttctgaagccaggccttCttgtattttttcttccagga	9	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110296356	A	A	110296356	1	1	54	0	1	0	0	0	0	0	0	0	11496	928	32	3		3	PAK3	23	110296356	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	876	110296356	44974204	4438	61032											
PAK3	5063	broad.mit.edu	37	chrX	110313409	110313409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtgattccagggtagGgtagttgcaccaacccacag	12	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110313409	T	T	110313409	1	4	54	0	1	0	0	0	0	0	0	0	11496	1247	43	2		2	PAK3	23	110313409	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	17053	110313409	44957151	4439	61033											
PAK3	5063	broad.mit.edu	37	chrX	110366610	110366610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattgactgttcagggcctGccggccctttacatctacgt	11	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110366610	T	T	110366610	1	4	54	0	1	0	0	0	0	0	0	0	11496	1334	46	3		3	PAK3	23	110366610	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	53201	110366610	44903950	4440	61034											
PAK3	5063	broad.mit.edu	37	chrX	110437460	110437460	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacttctatcagaactgagGcctgggaatatcagagtccc	10	10	3	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110437460	C	C	110437460	1	2	54	0	1	0	0	0	0	0	0	0	11496	1218	42	4		4	PAK3	23	110437460	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	70850	110437460	44833100	4441	61035											
CAPN6	827	broad.mit.edu	37	chrX	110489962	110489962	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacctgccccaagaactgaTcacagaattttcggctgttc	7	12	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110489962	A	A	110489962	3	1	54	1	0	0	0	0	1	0	0	0	2656	1435	50	5	160	5	CAPN6	23	110489962	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	52502	110489962	44780598	4442	61036											
CAPN6	827	broad.mit.edu	37	chrX	110490827	110490827	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagccaattctgggactttCagcatagcactcgagcacca	8	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110490827	A	A	110490827	1	1	54	0	1	0	0	0	0	0	0	0	2656	841	29	3		3	CAPN6	23	110490827	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	865	110490827	44779733	4443	61037											
CAPN6	827	broad.mit.edu	37	chrX	110497650	110497650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatgaatacaataattgGttatatgagagtctgggaag	10	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110497650	T	T	110497650	1	4	54	0	1	0	0	0	0	0	0	0	2656	1276	44	3		3	CAPN6	23	110497650	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	6823	110497650	44772910	4444	61038											
CAPN6	827	broad.mit.edu	37	chrX	110512607	110512607	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgtttattacttcagactGtaaagtgttcttactttcac	5	7	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110512607	C	C	110512607	1	2	54	0	1	0	0	0	0	0	0	0	2656	1392	48	4		4	CAPN6	23	110512607	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14957	110512607	44757953	4445	61039											
ALG13	79868	broad.mit.edu	37	chrX	110927881	110927881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttatgatggggttataccCcgtcacaaggctatacccca	8	12	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110927881	A	A	110927881	1	1	54	0	1	0	0	0	0	0	0	0	515	638	22	2		2	ALG13	23	110927881	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	415274	110927881	44342679	4446	61040											
ALG13	79868	broad.mit.edu	37	chrX	110951803	110951803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcatgcctttgctgaataGtctatattgctgaacctttg	9	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110951803	T	T	110951803	1	4	54	0	1	0	0	0	0	0	0	0	515	1044	36	3		3	ALG13	23	110951803	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	23922	110951803	44318757	4447	61041											
TRPC5	7224	broad.mit.edu	37	chrX	111097379	111097379	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcatctggaatgtccaggaGaaagtctactgtcataatac	10	8	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111097379	T	T	111097379	1	4	54	0	1	0	0	0	0	0	0	0	16707	957	33	3		3	TRPC5	23	111097379	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	145576	111097379	44173181	4448	61042											
TRPC5	7224	broad.mit.edu	37	chrX	111121980	111121980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagaacaactgctttagGtgatctgggcctagtctgtt	11	8	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111121980	T	T	111121980	1	4	54	0	1	0	0	0	0	0	0	0	16707	1276	44	3		3	TRPC5	23	111121980	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	24601	111121980	44148580	4449	61043											
TRPC5	7224	broad.mit.edu	37	chrX	111155653	111155653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctccgagcttggtccaGcaggtctttggcaaagagct	14	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111155653	T	T	111155653	3	4	54	1	0	0	0	0	1	0	0	0	16707	962	34	3	2191	3	TRPC5	23	111155653	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	33673	111155653	44114907	4450	61044											
TRPC5	7224	broad.mit.edu	37	chrX	111299235	111299235	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagtatattggagcatcaaGatagggtgaagtaggaagtt	13	2	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111299235	C	C	111299235	1	2	54	0	1	0	0	0	0	0	0	0	16707	957	33	4		4	TRPC5	23	111299235	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	143582	111299235	43971325	4451	61045											
TRPC5	7224	broad.mit.edu	37	chrX	111300456	111300456	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagggaagggaaatgtggGcagataggcaaatcaagtaa	17	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111300456	C	C	111300456	1	2	54	0	1	0	0	0	0	0	0	0	16707	1218	42	4		4	TRPC5	23	111300456	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1221	111300456	43970104	4452	61046											
TRPC5	7224	broad.mit.edu	37	chrX	111309411	111309411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcaggcagaaccaaacCcttctgcttctgtgttccta	6	13	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111309411	A	A	111309411	1	1	54	0	1	0	0	0	0	0	0	0	16707	638	22	2		2	TRPC5	23	111309411	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	8955	111309411	43961149	4453	61047											
ZCCHC16	340595	broad.mit.edu	37	chrX	111406675	111406675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaatctcatctctgcatGctctaggcaaaagacagccc	7	14	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111406675	T	T	111406675	1	4	54	0	1	0	0	0	0	0	0	0	17710	1334	46	3		3	ZCCHC16	23	111406675	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	97264	111406675	43863885	4454	61048											
ZCCHC16	340595	broad.mit.edu	37	chrX	111407958	111407958	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttataacccctgaactctGactctggtgtatttcctggc	8	11	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111407958	A	A	111407958	1	1	54	0	1	0	0	0	0	0	0	0	17710	1305	45	4		4	ZCCHC16	23	111407958	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1283	111407958	43862602	4455	61049											
ZCCHC16	340595	broad.mit.edu	37	chrX	111424279	111424279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagaagcagggtggggcGttgcctcacccgggaagtgc	18	10	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111424279	T	T	111424279	1	4	54	0	1	0	0	0	0	0	0	0	17710	1160	40	3		3	ZCCHC16	23	111424279	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	16321	111424279	43846281	4456	61050											
ZCCHC16	340595	broad.mit.edu	37	chrX	111625531	111625531	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctggttagaaaggctttTggattccagattgctattgt	10	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111625531	C	C	111625531	1	2	54	0	1	0	0	0	0	0	0	0	17710	1827	63	5		5	ZCCHC16	23	111625531	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	201252	111625531	43645029	4457	61051											
LHFPL1	340596	broad.mit.edu	37	chrX	111920123	111920123	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagaacagctagccaccatCttccaaatgagagcccttca	8	13	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111920123	T	T	111920123	1	4	54	0	1	0	0	0	0	0	0	0	8836	928	32	4		4	LHFPL1	23	111920123	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	294592	111920123	43350437	4458	61052											
AMOT	154796	broad.mit.edu	37	chrX	112035189	112035189	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttctccaccttgtcaacGtacacttgcttctttttcag	4	13	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112035189	A	A	112035189	2	1	54	1	0	0	0	0	0	0	0	1	582	1140	40	4		4	AMOT	23	112035189	Silent	SNP	G	TCGA-17-Z022-01A-01W-0746-08	115066	112035189	43235371	4459	61053											
HTR2C	3358	broad.mit.edu	37	chrX	114141570	114141570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctttgtgtttctgatcatGtggtgcccatttttcattac	7	8	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114141570	A	A	114141570	3	1	54	1	0	0	0	0	1	0	0	0	7513	1377	48	4	983	4	HTR2C	23	114141570	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2106381	114141570	41128990	4460	61054											
SLC6A14	11254	broad.mit.edu	37	chrX	115577880	115577880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattttaaaaataatttaCtaatttttggttacttttct	3	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115577880	A	A	115577880	1	1	54	0	1	0	0	0	0	0	0	0	14791	580	20	3		3	SLC6A14	23	115577880	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1436310	115577880	39692680	4461	61055											
WDR44	54521	broad.mit.edu	37	chrX	117570608	117570608	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaagttcacttttattgtAtaaatagggttctttttcat	5	5	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117570608	G	G	117570608	1	3	54	0	1	0	0	0	0	0	0	0	17423	464	16	5		5	WDR44	23	117570608	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1992728	117570608	37699952	4462	61056											
DOCK11	139818	broad.mit.edu	37	chrX	117639447	117639447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgttacaagtcagcagaCagaaaagttaactggaagag	11	5	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117639447	A	A	117639447	1	1	54	0	1	0	0	0	0	0	0	0	4726	493	17	3		3	DOCK11	23	117639447	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	68839	117639447	37631113	4463	61057											
DOCK11	139818	broad.mit.edu	37	chrX	117701949	117701949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatttttgaagctgtgacAgattgatagtttcacataaa	7	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117701949	T	T	117701949	1	4	54	0	1	0	0	0	0	0	0	0	4726	203	7	5		5	DOCK11	23	117701949	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	62502	117701949	37568611	4464	61058											
IL13RA1	3597	broad.mit.edu	37	chrX	117883868	117883868	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaacaagatggacagtttGcttcaatgaaaaatgcatct	7	8	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117883868	C	C	117883868	1	2	54	0	1	0	0	0	0	0	0	0	7699	1334	46	4		4	IL13RA1	23	117883868	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	181919	117883868	37386692	4465	61059											
LONRF3	79836	broad.mit.edu	37	chrX	118116994	118116994	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgagggtgctgtcctcCttggcatttggggtcctgag	17	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118116994	G	G	118116994	1	3	54	0	1	0	0	0	0	0	0	0	8983	696	24	4		4	LONRF3	23	118116994	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	233126	118116994	37153566	4466	61060											
KIAA1210	57481	broad.mit.edu	37	chrX	118220333	118220333	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggctcaaaattaactacctCcaaatctattaaatctagaa	3	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118220333	A	A	118220333	1	1	54	0	1	0	0	0	0	0	0	0	8284	870	30	3		3	KIAA1210	23	118220333	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	103339	118220333	37050227	4467	61061											
CXorf56	63932	broad.mit.edu	37	chrX	118675276	118675276	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccccagcaccttgctaCcccttgctactcaccagctc	7	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118675276	A	A	118675276	1	1	54	0	1	0	0	0	0	0	0	0	4145	522	18	3		3	CXorf56	23	118675276	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	454943	118675276	36595284	4468	61062											
UBE2A	7319	broad.mit.edu	37	chrX	118708964	118708964	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagtctgcgttcgtggcGgtggcgagaaaactggggac	19	7	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118708964	C	C	118708964	1	2	54	0	1	0	0	0	0	0	0	0	16970	1131	39	4		4	UBE2A	23	118708964	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	33688	118708964	36561596	4469	61063											
AKAP14	158798	broad.mit.edu	37	chrX	119048974	119048974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttactggcctatgcaCggcacttgccaaaactgatc	7	13	2	1	rs7876933	by1000genomes	TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119048974	A	A	119048974	1	1	54	0	1	0	0	0	0	0	0	0	450	551	19	3		3	AKAP14	23	119048974	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	340010	119048974	36221586	4470	61064											
ATP1B4	23439	broad.mit.edu	37	chrX	119500389	119500389	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactgttccaggatgatccgGatgaagcgaaccagaactac	10	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119500389	A	A	119500389	3	1	54	1	0	0	0	0	1	0	0	0	1139	1174	41	4	79	4	ATP1B4	23	119500389	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	451415	119500389	35770171	4471	61065											
ATP1B4	23439	broad.mit.edu	37	chrX	119510187	119510187	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcccaattttttactgtcAaatatgttttgttaaaaaaa	4	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119510187	T	T	119510187	1	4	54	0	1	0	0	0	0	0	0	0	1139	145	5	5		5	ATP1B4	23	119510187	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	9798	119510187	35760373	4472	61066											
LAMP2	3920	broad.mit.edu	37	chrX	119576890	119576890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatctttccttttcactgCtattatctttctgaagtact	3	10	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119576890	A	A	119576890	1	1	54	0	1	0	0	0	0	0	0	0	8690	812	28	3		3	LAMP2	23	119576890	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	66703	119576890	35693670	4473	61067											
GRIA3	2892	broad.mit.edu	37	chrX	122492631	122492631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtacaatctgtcagtcaaGcagcctctcaatctctcatg	7	12	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122492631	T	T	122492631	1	4	54	0	1	0	0	0	0	0	0	0	6835	986	34	3		3	GRIA3	23	122492631	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2915741	122492631	32777929	4474	61068											
GRIA3	2892	broad.mit.edu	37	chrX	122537000	122537000	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggactcttgaaagaggacaGcatttggatgtaagaaaata	11	4	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122537000	C	C	122537000	1	2	54	0	1	0	0	0	0	0	0	0	6835	986	34	4		4	GRIA3	23	122537000	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	44369	122537000	32733560	4475	61069											
GRIA3	2892	broad.mit.edu	37	chrX	122616707	122616707	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgttttctatatacttgtcGgaggtctggggctggccatg	14	8	2	0	rs137852350		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122616707	C	C	122616707	3	2	54	1	0	0	0	0	1	0	0	0	6835	1117	39	4	2674	4	GRIA3	23	122616707	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	79707	122616707	32653853	4476	61070											
THOC2	57187	broad.mit.edu	37	chrX	122760646	122760646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataggtccacttgaacgtGctacttttatctccattcaa	5	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122760646	T	T	122760646	1	4	54	0	1	0	0	0	0	0	0	0	15988	1334	46	3		3	THOC2	23	122760646	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	143939	122760646	32509914	4477	61071											
THOC2	57187	broad.mit.edu	37	chrX	122803900	122803900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtactttccacatatgccGgtctatacttccctctaaag	5	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122803900	T	T	122803900	1	4	54	0	1	0	0	0	0	0	0	0	15988	1131	39	1		1	THOC2	23	122803900	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	43254	122803900	32466660	4478	61072											
SH2D1A	4068	broad.mit.edu	37	chrX	123496226	123496226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggcagaatattgaatcgaAgaggattattcttgagcctt	11	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123496226	T	T	123496226	1	4	54	0	1	0	0	0	0	0	0	0	14343	87	3	5		5	SH2D1A	23	123496226	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	692326	123496226	31774334	4479	61073											
ODZ1	10178	broad.mit.edu	37	chrX	123518372	123518372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatattaccatgcggcccaCattatcatattgaatggtca	6	10	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123518372	A	A	123518372	3	1	54	1	0	0	0	0	1	0	0	0	10929	478	17	3	1801	3	ODZ1	23	123518372	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	22146	123518372	31752188	4480	61074											
ODZ1	10178	broad.mit.edu	37	chrX	123597697	123597697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggttggggtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	22	0	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123597697	T	T	123597697	1	4	54	0	1	0	0	0	0	0	0	0	10929	1392	48	3		3	ODZ1	23	123597697	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	79325	123597697	31672863	4481	61075											
ODZ1	10178	broad.mit.edu	37	chrX	123680931	123680931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaggatccacacagtcgGttaaaccatctggaaataaa	8	9	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123680931	T	T	123680931	3	4	54	1	0	0	0	0	1	0	0	0	10929	1261	44	3	5826	3	ODZ1	23	123680931	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	83234	123680931	31589629	4482	61076											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686201	125686201	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaagaggggaatgcgcgCgatgtggcctgactccacgt	15	12	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125686201	T	T	125686201	3	4	54	1	0	0	0	0	1	0	0	0	4297	768	27	4	1004	4	DCAF12L1	23	125686201	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2005270	125686201	29584359	4483	61077											
ACTRT1	139741	broad.mit.edu	37	chrX	127185301	127185301	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggagagtacaatgtctgcAtaaagtttattctggatgtc	10	7	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127185301	T	T	127185301	4	4	54	1	0	0	0	0	0	1	0	0	218	224	8	5	249	5	ACTRT1	23	127185301	Nonsense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1499100	127185301	28085259	4484	61078											
XPNPEP2	7512	broad.mit.edu	37	chrX	128889425	128889425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaacagggtgaggggagGgggatgttctgggacctgag	22	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128889425	T	T	128889425	1	4	54	0	1	0	0	0	0	0	0	0	17570	1247	43	2		2	XPNPEP2	23	128889425	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1704124	128889425	26381135	4485	61079											
XPNPEP2	7512	broad.mit.edu	37	chrX	128894633	128894633	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaccatcaccctgggaggcTggtggggcaaggattttgtc	15	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128894633	C	C	128894633	1	2	54	0	1	0	0	0	0	0	0	0	17570	1595	55	5		5	XPNPEP2	23	128894633	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	5208	128894633	26375927	4486	61080											
XPNPEP2	7512	broad.mit.edu	37	chrX	128901640	128901640	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctatgaccggaacctcaTcgatgtcagcctgctgtctc	9	15	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128901640	C	C	128901640	3	2	54	1	0	0	0	0	1	0	0	0	17570	1435	50	5	1880	5	XPNPEP2	23	128901640	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	7007	128901640	26368920	4487	61081											
UTP14A	10813	broad.mit.edu	37	chrX	129055435	129055435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccatggagtttctgaaaGtgagggagaagaaagaccag	15	6	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129055435	T	T	129055435	3	4	54	1	0	0	0	0	1	0	0	0	17222	1029	36	3	1262	3	UTP14A	23	129055435	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	153795	129055435	26215125	4488	61082											
UTP14A	10813	broad.mit.edu	37	chrX	129059013	129059013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaataaggagcttcccagaCctgtgttagaagggcagcag	12	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129059013	A	A	129059013	3	1	54	1	0	0	0	0	1	0	0	0	17222	507	18	3	1637	3	UTP14A	23	129059013	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3578	129059013	26211547	4489	61083											
UTP14A	10813	broad.mit.edu	37	chrX	129063622	129063622	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaggagccctgacttcaCttcctttggtccagttttac	8	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129063622	T	T	129063622	1	4	54	0	1	0	0	0	0	0	0	0	17222	580	20	4		4	UTP14A	23	129063622	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4609	129063622	26206938	4490	61084											
BCORL1	63035	broad.mit.edu	37	chrX	129146846	129146846	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagttgcagagaagaccagCagttgcctctcgggcctcag	13	12	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129146846	T	T	129146846	1	4	54	0	1	0	0	0	0	0	0	0	1392	725	25	4		4	BCORL1	23	129146846	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	83224	129146846	26123714	4491	61085											
BCORL1	63035	broad.mit.edu	37	chrX	129149333	129149333	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagggggcgcccatcaggcCcaccagcgttgtttcggagt	14	13	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129149333	T	T	129149333	3	4	54	1	0	0	0	0	1	0	0	0	1392	623	22	4	2595	4	BCORL1	23	129149333	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2487	129149333	26121227	4492	61086											
BCORL1	63035	broad.mit.edu	37	chrX	129162885	129162885	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgtgtgtggcggggggtCagaggaggcaggaggggggt	26	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129162885	T	T	129162885	1	4	54	0	1	0	0	0	0	0	0	0	1392	841	29	4		4	BCORL1	23	129162885	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	13552	129162885	26107675	4493	61087											
ELF4	2000	broad.mit.edu	37	chrX	129206480	129206480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagacgggtaggttccaagGgagggcggggggctcatccc	19	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129206480	T	T	129206480	1	4	54	0	1	0	0	0	0	0	0	0	5098	1247	43	2		2	ELF4	23	129206480	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	43595	129206480	26064080	4494	61088											
AIFM1	9131	broad.mit.edu	37	chrX	129267393	129267393	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtgctctacccgcctccttCccaactttatatcgtagaag	7	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129267393	G	G	129267393	3	3	54	1	0	0	0	0	1	0	0	0	426	855	30	4	514	4	AIFM1	23	129267393	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	60913	129267393	26003167	4495	61089											
ENOX2	10495	broad.mit.edu	37	chrX	129761813	129761813	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatcacagtgagagagcagGtgagggaaacttcctgaaag	14	6	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129761813	C	C	129761813	1	2	54	0	1	0	0	0	0	0	0	0	5169	1276	44	4		4	ENOX2	23	129761813	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	494420	129761813	25508747	4496	61090											
ARHGAP36	158763	broad.mit.edu	37	chrX	130215686	130215686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcaagggcactgtgccCcagaatcatgccccctttgc	11	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130215686	A	A	130215686	3	1	54	1	0	0	0	0	1	0	0	0	885	623	22	2	49	2	ARHGAP36	23	130215686	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	453873	130215686	25054874	4497	61091											
IGSF1	3547	broad.mit.edu	37	chrX	130413340	130413340	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagaccagaaaagagatgaGaggagttgctgggatgaggg	18	3	0	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130413340	C	C	130413340	1	2	54	0	1	0	0	0	0	0	0	0	7666	957	33	4		4	IGSF1	23	130413340	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	197654	130413340	24857220	4498	61092											
IGSF1	3547	broad.mit.edu	37	chrX	130455814	130455814	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattagttctagttgttgctCtccatggatgtgttgccttc	9	8	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130455814	A	A	130455814	1	1	54	0	1	0	0	0	0	0	0	0	7666	928	32	3		3	IGSF1	23	130455814	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	42474	130455814	24814746	4499	61093											
IGSF1	3547	broad.mit.edu	37	chrX	130532153	130532153	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgatttcctgccccggatCcatgtcgcgaggcgggcaag	13	13	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130532153	A	A	130532153	1	1	54	0	1	0	0	0	0	0	0	0	7666	870	30	3		3	IGSF1	23	130532153	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	76339	130532153	24738407	4500	61094											
MST4	51765	broad.mit.edu	37	chrX	131202584	131202584	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaagttattcaacagtcagCttatgactcaaaagtaaagt	7	6	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131202584	G	G	131202584	3	3	54	1	0	0	0	0	1	0	0	0	9986	797	28	4	602	4	MST4	23	131202584	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	670431	131202584	24067976	4501	61095											
FRMD7	90167	broad.mit.edu	37	chrX	131217354	131217354	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgtacaatgctctataTtgctcatctagcatattcta	5	9	5	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131217354	A	A	131217354	1	1	54	0	1	0	0	0	0	0	0	0	6115	1508	52	5		5	FRMD7	23	131217354	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	14770	131217354	24053206	4502	61096											
FRMD7	90167	broad.mit.edu	37	chrX	131219862	131219862	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatggagcctgaaacttctCaggtttaagggcttgctctt	10	9	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131219862	A	A	131219862	1	1	54	0	1	0	0	0	0	0	0	0	6115	841	29	3		3	FRMD7	23	131219862	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2508	131219862	24050698	4503	61097											
GPC4	2239	broad.mit.edu	37	chrX	132438657	132438657	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctacctactgtgaattgcttCctgatgcctcggttgacaat	8	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132438657	T	T	132438657	1	4	54	0	1	0	0	0	0	0	0	0	6665	870	30	4		4	GPC4	23	132438657	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1218795	132438657	22831903	4504	61098											
GPC3	2719	broad.mit.edu	37	chrX	133033483	133033483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaggatcctgacattcaCagctattaccaaccaattcc	4	15	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133033483	A	A	133033483	1	1	54	0	1	0	0	0	0	0	0	0	6664	493	17	3		3	GPC3	23	133033483	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	594826	133033483	22237077	4505	61099											
HPRT1	3251	broad.mit.edu	37	chrX	133627709	133627709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggataaatgttttcaactGtcattttatcttcgaaaagt	6	5	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133627709	T	T	133627709	1	4	54	0	1	0	0	0	0	0	0	0	7405	1392	48	3		3	HPRT1	23	133627709	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	594226	133627709	21642851	4506	61100											
FAM122B	159090	broad.mit.edu	37	chrX	133906487	133906487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attataaagccacagaaatcCaaagtaagactcttcgaggt	7	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133906487	A	A	133906487	1	1	54	0	1	0	0	0	0	0	0	0	5466	609	21	2		2	FAM122B	23	133906487	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	278778	133906487	21364073	4507	61101											
ZNF449	203523	broad.mit.edu	37	chrX	134484692	134484692	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaatggtatgttgggaGgaataggatgcccaggagca	15	5	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134484692	A	A	134484692	1	1	54	0	1	0	0	0	0	0	0	0	18047	1015	35	4		4	ZNF449	23	134484692	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	578205	134484692	20785868	4508	61102											
DDX26B	203522	broad.mit.edu	37	chrX	134680395	134680395	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggtgttcaagaagagGtgagattttatttttttttt	10	3	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134680395	T	T	134680395	5	4	54	1	0	0	0	0	0	0	1	0	4386	1275	44	3	444	3	DDX26B	23	134680395	Splice_Site	SNP	G	TCGA-17-Z022-01A-01W-0746-08	195703	134680395	20590165	4509	61103											
DDX26B	203522	broad.mit.edu	37	chrX	134683487	134683487	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttattttggactttgctttCagctggaaaatttgtacaag	8	5	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134683487	T	T	134683487	1	4	54	0	1	0	0	0	0	0	0	0	4386	841	29	4		4	DDX26B	23	134683487	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3092	134683487	20587073	4510	61104											
SAGE1	55511	broad.mit.edu	37	chrX	134975685	134975685	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaaggctcaaggcggatGgaaggaagggaagctgaccg	18	7	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134975685	T	T	134975685	1	4	54	0	1	0	0	0	0	0	0	0	13920	1363	47	2		2	SAGE1	23	134975685	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	292198	134975685	20294875	4511	61105											
SAGE1	55511	broad.mit.edu	37	chrX	134990452	134990452	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaatgcagtatcataaatgGaagaatgtggttttattata	9	2	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134990452	T	T	134990452	1	4	54	0	1	0	0	0	0	0	0	0	13920	1189	41	3		3	SAGE1	23	134990452	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	14767	134990452	20280108	4512	61106											
FHL1	2273	broad.mit.edu	37	chrX	135288734	135288734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgccgcaagcccatcgGtgcggactccaaggtaacgg	14	12	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135288734	T	T	135288734	3	4	54	1	0	0	0	0	1	0	0	0	5935	1261	44	3	262	3	FHL1	23	135288734	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	298282	135288734	19981826	4513	61107											
GPR112	139378	broad.mit.edu	37	chrX	135428176	135428176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctatgtctacaaaacctGcaaatgaacttcctttgaca	4	11	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135428176	T	T	135428176	3	4	54	1	0	0	0	0	1	0	0	0	6694	1319	46	3	2321	3	GPR112	23	135428176	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	139442	135428176	19842384	4514	61108											
GPR112	139378	broad.mit.edu	37	chrX	135431852	135431852	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaattctttctggtgccaCttcaggatctgtaatttcaa	6	9	6	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135431852	A	A	135431852	3	1	54	1	0	0	0	0	1	0	0	0	6694	565	20	3	5997	3	GPR112	23	135431852	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3676	135431852	19838708	4515	61109											
GPR112	139378	broad.mit.edu	37	chrX	135439691	135439691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtattgcccaccctacaGggttggtgtgaggagtaaat	12	9	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135439691	T	T	135439691	1	4	54	0	1	0	0	0	0	0	0	0	6694	1015	35	2		2	GPR112	23	135439691	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7839	135439691	19830869	4516	61110											
GPR112	139378	broad.mit.edu	37	chrX	135482021	135482021	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttagcaaacttcgaaaagAttatcctgccaaaattctga	5	8	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135482021	T	T	135482021	3	4	54	1	0	0	0	0	1	0	0	0	6694	333	12	5	8391	5	GPR112	23	135482021	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	42330	135482021	19788539	4517	61111											
CD40LG	959	broad.mit.edu	37	chrX	135728154	135728154	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagagcataccaaatgtaaGatggctttgggatatccaag	10	6	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135728154	C	C	135728154	1	2	54	0	1	0	0	0	0	0	0	0	3046	957	33	4		4	CD40LG	23	135728154	5'Flank	SNP	G	TCGA-17-Z022-01A-01W-0746-08	246133	135728154	19542406	4518	61112											
CD40LG	959	broad.mit.edu	37	chrX	135730550	135730550	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttgctgtgtatcttcataGaaggttggacaaggtaagat	11	4	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135730550	A	A	135730550	3	1	54	1	0	0	0	0	1	0	0	0	3046	942	33	4	145	4	CD40LG	23	135730550	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	2396	135730550	19540010	4519	61113											
CD40LG	959	broad.mit.edu	37	chrX	135741769	135741769	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacatgaaaccaaaacgggCcctgctccataagagcttat	7	12	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135741769	A	A	135741769	1	1	54	0	1	0	0	0	0	0	0	0	3046	754	26	3		3	CD40LG	23	135741769	3'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11219	135741769	19528791	4520	61114											
ARHGEF6	9459	broad.mit.edu	37	chrX	135863101	135863101	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcaaggactaagccacatCcgcgattgcatctgctgttg	10	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135863101	A	A	135863101	1	1	54	0	1	0	0	0	0	0	0	0	912	870	30	3		3	ARHGEF6	23	135863101	5'UTR	SNP	C	TCGA-17-Z022-01A-01W-0746-08	121332	135863101	19407459	4521	61115											
GPR101	83550	broad.mit.edu	37	chrX	136112889	136112889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttaccctccatgctgccGtcgctggccaccgtgctgct	9	18	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136112889	T	T	136112889	3	4	54	1	0	0	0	0	1	0	0	0	6687	1136	40	3	584	3	GPR101	23	136112889	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	249788	136112889	19157671	4522	61116											
GPR101	83550	broad.mit.edu	37	chrX	136113762	136113762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgggccaggctgatgggCattttggagaggggcatgca	18	8	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136113762	A	A	136113762	3	1	54	1	0	0	0	0	1	0	0	0	6687	710	25	3	1457	3	GPR101	23	136113762	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	873	136113762	19156798	4523	61117											
ZIC3	7547	broad.mit.edu	37	chrX	136649480	136649480	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccgcgcacggacccctaCgcggccggcgctcagtttcc	12	19	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136649480	T	T	136649480	2	4	54	1	0	0	0	0	0	0	0	1	17806	547	19	4		4	ZIC3	23	136649480	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	535718	136649480	18621080	4524	61118											
FGF13	2258	broad.mit.edu	37	chrX	137761108	137761108	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatccaaaacttttggcgcAtagaagaaggtagccttagt	10	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137761108	T	T	137761108	1	4	54	0	1	0	0	0	0	0	0	0	5899	232	8	5		5	FGF13	23	137761108	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1111628	137761108	17509452	4525	61119											
FGF13	2258	broad.mit.edu	37	chrX	137981474	137981474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagcttgtatttaaataCaaatttcaatgtcatggttg	8	4	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137981474	A	A	137981474	1	1	54	0	1	0	0	0	0	0	0	0	5899	493	17	3		3	FGF13	23	137981474	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	220366	137981474	17289086	4526	61120											
FGF13	2258	broad.mit.edu	37	chrX	137996187	137996187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattcctccccttccgggcCttaaaaataaagaaaatgca	5	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137996187	A	A	137996187	1	1	54	0	1	0	0	0	0	0	0	0	5899	696	24	2		2	FGF13	23	137996187	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14713	137996187	17274373	4527	61121											
FGF13	2258	broad.mit.edu	37	chrX	138152820	138152820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggattacaaatcattctGctataaagacacatgcacac	5	9	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138152820	T	T	138152820	1	4	54	0	1	0	0	0	0	0	0	0	5899	1334	46	3		3	FGF13	23	138152820	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	156633	138152820	17117740	4528	61122											
FGF13	2258	broad.mit.edu	37	chrX	138219340	138219340	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacatgcccagaatcacaGtcaattaaacagggctatga	7	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138219340	T	T	138219340	1	4	54	0	1	0	0	0	0	0	0	0	5899	1044	36	3		3	FGF13	23	138219340	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	66520	138219340	17051220	4529	61123											
MCF2	4168	broad.mit.edu	37	chrX	138735663	138735663	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagactcttgcatagctaTggaaactatgtccacttact	6	11	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138735663	G	G	138735663	1	3	54	0	1	0	0	0	0	0	0	0	9471	1479	51	5		5	MCF2	23	138735663	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	516323	138735663	16534897	4530	61124											
ATP11C	286410	broad.mit.edu	37	chrX	138882416	138882416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcctattatatttctggGggaaaaaaagttatgttgaa	9	3	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138882416	T	T	138882416	1	4	54	0	1	0	0	0	0	0	0	0	1125	1247	43	2		2	ATP11C	23	138882416	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	146753	138882416	16388144	4531	61125											
ATP11C	286410	broad.mit.edu	37	chrX	138886868	138886868	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctctagctctggggctttGagagtatctcagcatcctac	9	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138886868	T	T	138886868	1	4	54	0	1	0	0	0	0	0	0	0	1125	1305	45	3		3	ATP11C	23	138886868	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	4452	138886868	16383692	4532	61126											
CXorf66	347487	broad.mit.edu	37	chrX	139038138	139038138	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactttatcactgtcaacctCactataatatttcatcgtat	2	10	4	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139038138	A	A	139038138	4	1	54	1	0	0	0	0	0	1	0	0	4151	835	29	3	86	3	CXorf66	23	139038138	Nonsense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	151270	139038138	16232422	4533	61127											
MAGEC1	9947	broad.mit.edu	37	chrX	140996309	140996309	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactttgcctttggggagcCcagggagctcctcactaaag	12	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140996309	A	A	140996309	3	1	54	1	0	0	0	0	1	0	0	0	9272	623	22	2	3125	2	MAGEC1	23	140996309	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1958171	140996309	14274251	4534	61128											
MAGEC1	9947	broad.mit.edu	37	chrX	140996386	140996386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcccaactcttctcctcctCgttacgaattcctgtggggt	8	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140996386	A	A	140996386	3	1	54	1	0	0	0	0	1	0	0	0	9272	884	31	3	3202	3	MAGEC1	23	140996386	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	77	140996386	14274174	4535	61129											
MAGEC2	51438	broad.mit.edu	37	chrX	141292017	141292018	+	Intron	DNP	CC	AA	AA													taggaggatgtgggaacacaCctcagggcacagctggcagg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	141292018	AA	AA	141292017	1	1	54	0	1	0	0	0	0	0	0	0	9273	522	18	3		3	MAGEC2	23	141292017	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	295631	141292017	13978543	4536	61130											
SPANXN3	139067	broad.mit.edu	37	chrX	142597155	142597155	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggtatctatgcagaagaaGaagaggagcatgggtagagt	15	3	1	5			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142597155	T	T	142597155	1	4	54	0	1	0	0	0	0	0	0	0	15108	957	33	3		3	SPANXN3	23	142597155	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1305138	142597155	12673405	4537	61131											
SPANXN3	139067	broad.mit.edu	37	chrX	142597256	142597256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgaaacattccatggggGttcaggccatgagcaacatc	11	9	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142597256	T	T	142597256	1	4	54	0	1	0	0	0	0	0	0	0	15108	1276	44	3		3	SPANXN3	23	142597256	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	101	142597256	12673304	4538	61132											
SLITRK4	139065	broad.mit.edu	37	chrX	142716771	142716771	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccacatttctcataacaacTttctgtcctggaggatctga	7	11	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142716771	A	A	142716771	3	1	54	1	0	0	0	0	1	0	0	0	14859	1606	56	5	363	5	SLITRK4	23	142716771	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	119515	142716771	12553789	4539	61133											
SLITRK4	139065	broad.mit.edu	37	chrX	142718751	142718751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggtgataaaaattagaCcaaggtggtttcagctgatt	11	4	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142718751	A	A	142718751	3	1	54	1	0	0	0	0	1	0	0	0	14859	508	18	3	2343	3	SLITRK4	23	142718751	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	1980	142718751	12551809	4540	61134											
SPANXN1	494118	broad.mit.edu	37	chrX	144337245	144337245	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccgagtttgaaaaagatgAaaacgtcagaatattcaaca	7	6	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144337245	C	C	144337245	3	2	54	1	0	0	0	0	1	0	0	0	15106	247	9	5	136	5	SPANXN1	23	144337245	Missense_Mutation	SNP	A	TCGA-17-Z022-01A-01W-0746-08	1618494	144337245	10933315	4541	61135											
SLITRK2	84631	broad.mit.edu	37	chrX	144904349	144904349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctaggcctggagagcCtggagtatctccaggccgac	12	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144904349	A	A	144904349	3	1	54	1	0	0	0	0	1	0	0	0	14857	680	24	2	408	2	SLITRK2	23	144904349	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	567104	144904349	10366211	4542	61136											
SLITRK2	84631	broad.mit.edu	37	chrX	144905649	144905649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagcatgcaggggagatacTaaaatttctggggagggagg	16	4	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144905649	A	A	144905649	3	1	54	1	0	0	0	0	1	0	0	0	14857	1522	53	5	1708	5	SLITRK2	23	144905649	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	1300	144905649	10364911	4543	61137											
FMR1	2332	broad.mit.edu	37	chrX	147011976	147011976	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcttatgtatattaagggActtctggtactttcactttt	7	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147011976	T	T	147011976	1	4	54	0	1	0	0	0	0	0	0	0	6018	290	10	5		5	FMR1	23	147011976	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	2106327	147011976	8258584	4544	61138											
AFF2	2334	broad.mit.edu	37	chrX	147714613	147714613	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatagtatagaatgcaactgGatgatactgcagttcctttc	8	7	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147714613	T	T	147714613	1	4	54	0	1	0	0	0	0	0	0	0	357	1189	41	3		3	AFF2	23	147714613	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	702637	147714613	7555947	4545	61139											
AFF2	2334	broad.mit.edu	37	chrX	147742059	147742059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgtacactaggagactGggctgtgttaagggcatgtg	15	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147742059	T	T	147742059	1	4	54	0	1	0	0	0	0	0	0	0	357	1363	47	2		2	AFF2	23	147742059	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	27446	147742059	7528501	4546	61140											
AFF2	2334	broad.mit.edu	37	chrX	147749602	147749602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaatgggagaaattggCcaaaacaaaggggctacagg	12	7	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147749602	A	A	147749602	1	1	54	0	1	0	0	0	0	0	0	0	357	754	26	3		3	AFF2	23	147749602	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	7543	147749602	7520958	4547	61141											
AFF2	2334	broad.mit.edu	37	chrX	147825720	147825720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgaagtagaggctcctGtgaagatagagatcctgagt	13	7	0	6			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147825720	T	T	147825720	1	4	54	0	1	0	0	0	0	0	0	0	357	1392	48	3		3	AFF2	23	147825720	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	76118	147825720	7444840	4548	61142											
AFF2	2334	broad.mit.edu	37	chrX	147882230	147882230	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttaccagaaaaaactgaactCccactttttttttcccatga	3	11	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147882230	A	A	147882230	1	1	54	0	1	0	0	0	0	0	0	0	357	870	30	3		3	AFF2	23	147882230	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	56510	147882230	7388330	4549	61143											
AFF2	2334	broad.mit.edu	37	chrX	147883301	147883301	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaaccaaacaaaaaccttGactccacatcaccactttat	1	14	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147883301	C	C	147883301	1	2	54	0	1	0	0	0	0	0	0	0	357	1305	45	4		4	AFF2	23	147883301	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	1071	147883301	7387259	4550	61144											
AFF2	2334	broad.mit.edu	37	chrX	147967464	147967464	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgatgaagatgacctTgagcctgtgaagaccttgac	12	8	0	8			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147967464	A	A	147967464	2	1	54	1	0	0	0	0	0	0	0	1	357	1799	63	5		5	AFF2	23	147967464	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	84163	147967464	7303096	4551	61145											
AFF2	2334	broad.mit.edu	37	chrX	148028727	148028727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatacatgttaggcaaagAcaatctttttatgaagttat	7	4	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148028727	G	G	148028727	1	3	54	0	1	0	0	0	0	0	0	0	357	290	10	5		5	AFF2	23	148028727	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	61263	148028727	7241833	4552	61146											
AFF2	2334	broad.mit.edu	37	chrX	148039689	148039689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttctttgtaggactcgGctaggcaaggttgattgctt	11	8	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148039689	T	T	148039689	1	4	54	0	1	0	0	0	0	0	0	0	357	1218	42	3		3	AFF2	23	148039689	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	10962	148039689	7230871	4553	61147											
HSFX2	100130086	broad.mit.edu	37	chrX	148802185	148802185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcgaaggaattgttcagGctagggtttcatcatcggac	12	7	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148802185	T	T	148802185	1	4	54	0	1	0	0	0	0	0	0	0	7468	1218	42	3		3	HSFX2	23	148802185	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	762496	148802185	6468375	4554	61148											
HSFX2	100130086	broad.mit.edu	37	chrX	148839961	148839961	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagagaggccgagggaaacaGaggaagctgggatttgtgag	18	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148839961	T	T	148839961	1	4	54	0	1	0	0	0	0	0	0	0	7468	957	33	3		3	HSFX2	23	148839961	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	37776	148839961	6430599	4555	61149											
MAMLD1	10046	broad.mit.edu	37	chrX	149573640	149573641	+	Intron	DNP	CC	AA	AA													tttctcaagccacatttcctCcacactatacttcagcagat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	149573641	AA	AA	149573640	1	1	54	0	1	0	0	0	0	0	0	0	9300	870	30	3		3	MAMLD1	23	149573640	Intron	DNP	CC	TCGA-17-Z022-01A-01W-0746-08	733679	149573640	5696920	4556	61150											
MAMLD1	10046	broad.mit.edu	37	chrX	149628276	149628276	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctctgttcttcatttctaaGatgaggatgataatgggaat	9	5	4	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149628276	A	A	149628276	1	1	54	0	1	0	0	0	0	0	0	0	9300	957	33	4		4	MAMLD1	23	149628276	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	54636	149628276	5642284	4557	61151											
MTM1	4534	broad.mit.edu	37	chrX	149764347	149764347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagtgatgtgaagaatttGtacaaatggctcctaagact	9	5	0	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149764347	T	T	149764347	1	4	54	0	1	0	0	0	0	0	0	0	10031	1392	48	3		3	MTM1	23	149764347	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	136071	149764347	5506213	4558	61152											
MTM1	4534	broad.mit.edu	37	chrX	149767270	149767270	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catggggtatatttgcttctCaactcttaattttttgctta	6	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149767270	G	G	149767270	1	3	54	0	1	0	0	0	0	0	0	0	10031	841	29	4		4	MTM1	23	149767270	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	2923	149767270	5503290	4559	61153											
MTM1	4534	broad.mit.edu	37	chrX	149775056	149775056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgtcaccacctaaggaGgtctaccttcacccattttt	5	15	3	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149775056	T	T	149775056	1	4	54	0	1	0	0	0	0	0	0	0	10031	1015	35	2		2	MTM1	23	149775056	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	7786	149775056	5495504	4560	61154											
MTM1	4534	broad.mit.edu	37	chrX	149807451	149807451	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatgaagaaaagtttaaCgtggatggatggacagttta	11	2	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149807451	T	T	149807451	2	4	54	1	0	0	0	0	0	0	0	1	10031	535	19	4		4	MTM1	23	149807451	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	32395	149807451	5463109	4561	61155											
MTMR1	8776	broad.mit.edu	37	chrX	149877189	149877189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaatagttgtggcacaaGttggggcagctgagactcat	13	6	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149877189	T	T	149877189	1	4	54	0	1	0	0	0	0	0	0	0	10032	1044	36	3		3	MTMR1	23	149877189	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	69738	149877189	5393371	4562	61156											
MTMR1	8776	broad.mit.edu	37	chrX	149899000	149899000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtttttgtgtccaggcaCtatttgcattcagctataaa	9	7	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149899000	A	A	149899000	3	1	54	1	0	0	0	0	1	0	0	0	10032	564	20	3	663	3	MTMR1	23	149899000	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	21811	149899000	5371560	4563	61157											
MTMR1	8776	broad.mit.edu	37	chrX	149899011	149899011	+	Missense_Mutation	SNP	C	G	G													gtccaggcactatttgcattCagctataaagaaaaatttcc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149899011	G	G	149899011	3	3	54	1	0	0	0	0	1	0	0	0	10032	825	29	4	674	4	MTMR1	23	149899011	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	11	149899011	5371549	4564	61158	287	2									
MTMR1	8776	broad.mit.edu	37	chrX	149899014	149899014	+	Missense_Mutation	SNP	C	A	A													caggcactatttgcattcagCtataaagaaaaatttccaat							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149899014	A	A	149899014	3	1	54	1	0	0	0	0	1	0	0	0	10032	796	28	3	677	3	MTMR1	23	149899014	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3	149899014	5371546	4565	61159	287	2									
PASD1	139135	broad.mit.edu	37	chrX	150770145	150770145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaatgctacttcctcaGggaagcctgattcactcaga	8	11	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150770145	T	T	150770145	1	4	54	0	1	0	0	0	0	0	0	0	11565	1015	35	2		2	PASD1	23	150770145	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	871131	150770145	4500415	4566	61160											
CNGA2	1260	broad.mit.edu	37	chrX	150912748	150912748	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagaacgaagtggcaacCagcatggaggtcgacgtgca	15	8	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912748	A	A	150912748	2	1	54	1	0	0	0	0	0	0	0	1	3629	581	21	2		2	CNGA2	23	150912748	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	142603	150912748	4357812	4567	61161											
GABRE	2564	broad.mit.edu	37	chrX	151128296	151128296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctggacttccgccaagCcctggcacgcttaccaactg	8	17	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151128296	A	A	151128296	1	1	54	0	1	0	0	0	0	0	0	0	6230	754	26	3		3	GABRE	23	151128296	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	215548	151128296	4142264	4568	61162											
GABRA3	2556	broad.mit.edu	37	chrX	151420159	151420159	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtttacatatactccaCtccattctttccacaattgt	2	12	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151420159	A	A	151420159	1	1	54	0	1	0	0	0	0	0	0	0	6222	580	20	3		3	GABRA3	23	151420159	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	291863	151420159	3850401	4569	61163											
GABRA3	2556	broad.mit.edu	37	chrX	151453203	151453203	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtcttcacttcagtcacTgcatctgcgtgaaagaaagt	8	10	6	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151453203	A	A	151453203	2	1	54	1	0	0	0	0	0	0	0	1	6222	1567	55	5		5	GABRA3	23	151453203	Silent	SNP	T	TCGA-17-Z022-01A-01W-0746-08	33044	151453203	3817357	4570	61164											
GABRA3	2556	broad.mit.edu	37	chrX	151489001	151489001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagctaaactatgaggatGcaaaggtgtaagaatgatac	13	4	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151489001	T	T	151489001	1	4	54	0	1	0	0	0	0	0	0	0	6222	1334	46	3		3	GABRA3	23	151489001	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	35798	151489001	3781559	4571	61165											
GABRA3	2556	broad.mit.edu	37	chrX	151495711	151495711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagagactgagactcccaCacaataataatgggagactt	8	8	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151495711	A	A	151495711	1	1	54	0	1	0	0	0	0	0	0	0	6222	493	17	3		3	GABRA3	23	151495711	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	6710	151495711	3774849	4572	61166											
GABRA3	2556	broad.mit.edu	37	chrX	151536591	151536591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagataatttcttccccCtgctcataatcctcccattt	4	14	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151536591	A	A	151536591	1	1	54	0	1	0	0	0	0	0	0	0	6222	696	24	2		2	GABRA3	23	151536591	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	40880	151536591	3733969	4573	61167											
GABRA3	2556	broad.mit.edu	37	chrX	151560554	151560554	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaataggagaactgggatTtaagtccaagcagtgagcat	11	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151560554	A	A	151560554	1	1	54	0	1	0	0	0	0	0	0	0	6222	1856	64	5		5	GABRA3	23	151560554	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	23963	151560554	3710006	4574	61168											
GABRQ	55879	broad.mit.edu	37	chrX	151815234	151815234	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattctaattacacaagattCattttattctttctttaaac	2	7	4	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151815234	T	T	151815234	1	4	54	0	1	0	0	0	0	0	0	0	6235	841	29	4		4	GABRQ	23	151815234	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	254680	151815234	3455326	4575	61169											
MAGEA6	4105	broad.mit.edu	37	chrX	151870280	151870280	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcacgagttgcagccaggGccagtgggagggggtttggg	21	7	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151870280	T	T	151870280	1	4	54	0	1	0	0	0	0	0	0	0	9260	1218	42	3		3	MAGEA6	23	151870280	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	55046	151870280	3400280	4576	61170											
MAGEA12	4111	broad.mit.edu	37	chrX	151899836	151899836	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccctcccactggccctgGctgcaactcgtgctcagact	8	19	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151899836	T	T	151899836	1	4	54	0	1	0	0	0	0	0	0	0	9254	1218	42	3		3	MAGEA12	23	151899836	3'UTR	SNP	G	TCGA-17-Z022-01A-01W-0746-08	29556	151899836	3370724	4577	61171											
NSDHL	50814	broad.mit.edu	37	chrX	152014961	152014961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatgctgacatagaaaaGgttaaccagaatcaggtaag	11	5	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152014961	T	T	152014961	3	4	54	1	0	0	0	0	1	0	0	0	10765	991	35	2	95	2	NSDHL	23	152014961	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	115125	152014961	3255599	4578	61172											
NSDHL	50814	broad.mit.edu	37	chrX	152031427	152031427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaatactgtgagaggcCgggcacggtggctcacgctt	13	9	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152031427	A	A	152031427	1	1	54	0	1	0	0	0	0	0	0	0	10765	667	23	1		1	NSDHL	23	152031427	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	16466	152031427	3239133	4579	61173											
HAUS7	55559	broad.mit.edu	37	chrX	152734594	152734594	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgggaagaggaagaaactGatgcattaccgggtacacat	14	6	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152734594	A	A	152734594	1	1	54	0	1	0	0	0	0	0	0	0	7037	1305	45	4		4	HAUS7	23	152734594	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	703167	152734594	2535966	4580	61174											
BGN	633	broad.mit.edu	37	chrX	152770098	152770098	+	Silent	SNP	C	A	A													ggtccatccgccatgtggccCctgtggcgcctcgtgtctct							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152770098	A	A	152770098	2	1	54	1	0	0	0	0	0	0	0	1	1424	610	22	2		2	BGN	23	152770098	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	35504	152770098	2500462	4581	61175	288	3									
BGN	633	broad.mit.edu	37	chrX	152770100	152770100	+	Missense_Mutation	SNP	T	A	A													tccatccgccatgtggccccTgtggcgcctcgtgtctctgc							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152770100	A	A	152770100	3	1	54	1	0	0	0	0	1	0	0	0	1424	1580	55	5	13	5	BGN	23	152770100	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2	152770100	2500460	4582	61176	288	3									
BGN	633	broad.mit.edu	37	chrX	152770102	152770102	+	Missense_Mutation	SNP	T	G	G													catccgccatgtggcccctgTggcgcctcgtgtctctgctg							TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152770102	G	G	152770102	3	3	54	1	0	0	0	0	1	0	0	0	1424	1696	59	5	15	5	BGN	23	152770102	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	2	152770102	2500458	4583	61177	288	3									
ATP2B3	492	broad.mit.edu	37	chrX	152825354	152825354	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgatgaagaacattctgggCcacgccgtgtaccagctcgc	11	12	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152825354	G	G	152825354	2	3	54	1	0	0	0	0	0	0	0	1	1145	726	26	4		4	ATP2B3	23	152825354	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	55252	152825354	2445206	4584	61178											
SLC6A8	6535	broad.mit.edu	37	chrX	152959807	152959807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcccccagggcgggatGtacgtcttccagctgtttga	12	12	2	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152959807	T	T	152959807	3	4	54	1	0	0	0	0	1	0	0	0	14804	1377	48	3	1439	3	SLC6A8	23	152959807	Missense_Mutation	SNP	G	TCGA-17-Z022-01A-01W-0746-08	134453	152959807	2310753	4585	61179											
SRPK3	26576	broad.mit.edu	37	chrX	153047620	153047620	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaaaagagagaccattgtCcagctcattgatgacttcag	8	11	2	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153047620	A	A	153047620	2	1	54	1	0	0	0	0	0	0	0	1	15279	842	30	3		3	SRPK3	23	153047620	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	87813	153047620	2222940	4586	61180											
IRAK1	3654	broad.mit.edu	37	chrX	153284805	153284805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgccaaggaaggaaaggaaGgttgaggcccgggtggggga	20	6	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153284805	T	T	153284805	1	4	54	0	1	0	0	0	0	0	0	0	7891	1015	35	2		2	IRAK1	23	153284805	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	237185	153284805	1985755	4587	61181											
OPN1LW	5956	broad.mit.edu	37	chrX	153418611	153418611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggacgcaagatggagtgGgcagggtcagactctgtgac	17	8	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153418611	T	T	153418611	1	4	54	0	1	0	0	0	0	0	0	0	10971	1247	43	2		2	OPN1LW	23	153418611	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	133806	153418611	1851949	4588	61182											
OPN1LW	5956	broad.mit.edu	37	chrX	153421872	153421872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactgcgtctgctggggacCctacaccttcttcgcatgct	10	14	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153421872	A	A	153421872	3	1	54	1	0	0	0	0	1	0	0	0	10971	623	22	2	866	2	OPN1LW	23	153421872	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	3261	153421872	1848688	4589	61183											
OPN1LW	5956	broad.mit.edu	37	chrX	153421947	153421947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgatggctgccctgccggCctactttgccaaaagtgcca	10	13	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153421947	A	A	153421947	3	1	54	1	0	0	0	0	1	0	0	0	10971	739	26	3	941	3	OPN1LW	23	153421947	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	75	153421947	1848613	4590	61184											
TKTL1	8277	broad.mit.edu	37	chrX	153533561	153533561	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggattcttcccgggctgggaGaaatgaccgcttctatgagg	14	9	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153533561	T	T	153533561	1	4	54	0	1	0	0	0	0	0	0	0	16058	957	33	3		3	TKTL1	23	153533561	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	111614	153533561	1736999	4591	61185											
TKTL1	8277	broad.mit.edu	37	chrX	153543399	153543399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaatttttggtgagtcaCgaatttactttcttcaagat	8	5	3	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153543399	A	A	153543399	1	1	54	0	1	0	0	0	0	0	0	0	16058	551	19	3		3	TKTL1	23	153543399	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	9838	153543399	1727161	4592	61186											
ATP6AP1	537	broad.mit.edu	37	chrX	153664221	153664221	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggccccactatttcttTgacccagattgtgtgaccct	8	13	1	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153664221	C	C	153664221	3	2	54	1	0	0	0	0	1	0	0	0	1169	1821	63	5	1435	5	ATP6AP1	23	153664221	Missense_Mutation	SNP	T	TCGA-17-Z022-01A-01W-0746-08	120822	153664221	1606339	4593	61187											
GDI1	2664	broad.mit.edu	37	chrX	153668786	153668786	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacagtgagtccctggccCggtatggcaagagcccatat	12	11	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153668786	A	A	153668786	2	1	54	1	0	0	0	0	0	0	0	1	6384	643	23	1		1	GDI1	23	153668786	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	4565	153668786	1601774	4594	61188											
PLXNA3	55558	broad.mit.edu	37	chrX	153691598	153691598	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctttttttggcctccGggctgtgggtgtgagtgctg	14	11	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153691598	C	C	153691598	1	2	54	0	1	0	0	0	0	0	0	0	12216	1131	39	4		4	PLXNA3	23	153691598	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	22812	153691598	1578962	4595	61189											
G6PD	2539	broad.mit.edu	37	chrX	153761372	153761372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccaagggagagaatgggCtccttgggtgttgagttggg	18	5	0	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153761372	A	A	153761372	1	1	54	0	1	0	0	0	0	0	0	0	6206	812	28	3		3	G6PD	23	153761372	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	69774	153761372	1509188	4596	61190											
GAB3	139716	broad.mit.edu	37	chrX	153950177	153950177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacatgacccagcagaccCtgacccagcagaccctcttc	6	19	1	4			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153950177	A	A	153950177	1	1	54	0	1	0	0	0	0	0	0	0	6210	696	24	2		2	GAB3	23	153950177	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	188805	153950177	1320383	4597	61191											
DKC1	1736	broad.mit.edu	37	chrX	153996928	153996928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattcatttgcctcccagccTacaaaaatgcctgcttgggg	8	12	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153996928	A	A	153996928	1	1	54	0	1	0	0	0	0	0	0	0	4582	1537	53	5		5	DKC1	23	153996928	Intron	SNP	T	TCGA-17-Z022-01A-01W-0746-08	46751	153996928	1273632	4598	61192											
DKC1	1736	broad.mit.edu	37	chrX	154004885	154004885	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgtttccacttccaaaAgtagaccactagggtgtcac	8	10	1	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154004885	T	T	154004885	1	4	54	0	1	0	0	0	0	0	0	0	4582	87	3	5		5	DKC1	23	154004885	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	7957	154004885	1265675	4599	61193											
MPP1	4354	broad.mit.edu	37	chrX	154020334	154020334	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaattccctaactccatgaGcagcctcttgcattgactct	5	15	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154020334	C	C	154020334	1	2	54	0	1	0	0	0	0	0	0	0	9827	986	34	4		4	MPP1	23	154020334	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	15449	154020334	1250226	4600	61194											
F8	2157	broad.mit.edu	37	chrX	154115831	154115831	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcatcagtcacgttaaCcagatgactttgcctgttac	7	10	2	2			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154115831	G	G	154115831	1	3	54	0	1	0	0	0	0	0	0	0	5393	522	18	4		4	F8	23	154115831	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	95497	154115831	1154729	4601	61195											
F8	2157	broad.mit.edu	37	chrX	154130237	154130237	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtaaacttgtatttatttCctgacacaagcaaccattcc	4	10	0	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154130237	T	T	154130237	1	4	54	0	1	0	0	0	0	0	0	0	5393	870	30	4		4	F8	23	154130237	Intron	SNP	C	TCGA-17-Z022-01A-01W-0746-08	14406	154130237	1140323	4602	61196											
F8	2157	broad.mit.edu	37	chrX	154157976	154157976	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgctcggggtcaaatgtttCatgtttttggaccactgggt	13	7	2	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154157976	T	T	154157976	3	4	54	1	0	0	0	0	1	0	0	0	5393	826	29	4	3046	4	F8	23	154157976	Missense_Mutation	SNP	C	TCGA-17-Z022-01A-01W-0746-08	27739	154157976	1112584	4603	61197											
MTCP1	4515	broad.mit.edu	37	chrX	154294390	154294390	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggtttgaatgaactcaccAgtaagcaaggtgatctggta	12	6	2	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154294390	T	T	154294390	1	4	54	0	1	0	0	0	0	0	0	0	10009	203	7	5		5	MTCP1	23	154294390	Intron	SNP	A	TCGA-17-Z022-01A-01W-0746-08	136414	154294390	976170	4604	61198											
RAB39B	116442	broad.mit.edu	37	chrX	154489808	154489808	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcttcctaaaccccaggccTttaacatgtggtccacaaag	7	13	0	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154489808	A	A	154489808	1	1	54	0	1	0	0	0	0	0	0	0	13038	1624	56	5		5	RAB39B	23	154489808	3'UTR	SNP	T	TCGA-17-Z022-01A-01W-0746-08	195418	154489808	780752	4605	61199											
CLIC2	1193	broad.mit.edu	37	chrX	154521491	154521491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtcagttaatatttggGtgtgacctcctttaaaagga	9	6	1	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154521491	T	T	154521491	1	4	54	0	1	0	0	0	0	0	0	0	3558	1276	44	3		3	CLIC2	23	154521491	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	31683	154521491	749069	4606	61200											
TMLHE	55217	broad.mit.edu	37	chrX	154743473	154743473	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttacacataagtgtatttaGagattagaaatccagacctc	6	7	0	3			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154743473	C	C	154743473	1	2	54	0	1	0	0	0	0	0	0	0	16355	957	33	4		4	TMLHE	23	154743473	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	221982	154743473	527087	4607	61201											
SPRY3	10251	broad.mit.edu	37	chrX	155004223	155004223	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatgagcctcatctccctCttcctaccctgcctgtgctg	7	18	3	1			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155004223	T	T	155004223	2	4	54	1	0	0	0	0	0	0	0	1	15225	900	32	4		4	SPRY3	23	155004223	Silent	SNP	C	TCGA-17-Z022-01A-01W-0746-08	260750	155004223	266337	4608	61202											
IL9R	3581	broad.mit.edu	37	chrX	155232744	155232744	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaactagggcatgtttggggGactgggttgtccgatgtcaa	16	6	1	0			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155232744	T	T	155232744	1	4	54	0	1	0	0	0	0	0	0	0	7778	1189	41	3		3	IL9R	23	155232744	Intron	SNP	G	TCGA-17-Z022-01A-01W-0746-08	228521	155232744	37816	4609	61203											
CAMTA1	23261	broad.mit.edu	37	chr1	7797239	7797239	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaggaccagtttgtcagTtggcagcaatggcaaaagtc	12	8	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7797239	G	G	7797239	1	3	55	0	1	0	0	0	0	0	0	0	2639	1740	60	5		5	CAMTA1	1	7797239	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08		7797239	241453382	1	61204											
ERRFI1	54206	broad.mit.edu	37	chr1	8075693	8075693	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacattgtgccttattctGggacatctccaaacctgtga	8	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8075693	A	A	8075693	1	1	55	0	1	0	0	0	0	0	0	0	5286	1363	47	4		4	ERRFI1	1	8075693	5'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	278454	8075693	241174928	2	61205											
MTOR	2475	broad.mit.edu	37	chr1	11307866	11307866	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagagggaaagggcctctCaccacttacctgatcaaatt	8	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11307866	A	A	11307866	1	1	55	0	1	0	0	0	0	0	0	0	10048	841	29	3		3	MTOR	1	11307866	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3232173	11307866	237942755	3	61206											
CLCN6	1185	broad.mit.edu	37	chr1	11896707	11896708	+	Intron	INS	-	G	G													cgattcagaatccagggagaINSgggggtatcctgttgcctca					rs143389418	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11896708	G	G	11896707	6	5	55	0	1	1	1	0	0	0	0	0	3498	319	11	0		0	CLCN6	1	11896707	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	588841	11896707	237353914	4	61207											
DDOST	1650	broad.mit.edu	37	chr1	20987363	20987363	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagtgctaggggcgacgcGgaacccttaccttctaccga	11	14	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20987363	A	A	20987363	1	1	55	0	1	0	0	0	0	0	0	0	4368	1131	39	4		4	DDOST	1	20987363	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9090656	20987363	228263258	5	61208											
HSPG2	3339	broad.mit.edu	37	chr1	22183555	22183555	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtccatggcaaacatgttgGagccggtgcacacgtaggtg	15	9	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22183555	A	A	22183555	3	1	55	1	0	0	0	0	1	0	0	0	7500	1174	41	4	7863	4	HSPG2	1	22183555	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1196192	22183555	227067066	6	61209											
RHCE	6006	broad.mit.edu	37	chr1	25712125	25712125	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgagtgcacacgccccaGctaaggactctgcacacatt	8	17	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25712125	A	A	25712125	1	1	55	0	1	0	0	0	0	0	0	0	13434	986	34	4		4	RHCE	1	25712125	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3528570	25712125	223538496	7	61210											
FGR	2268	broad.mit.edu	37	chr1	27956362	27956362	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaacttgcccaagattacAttgtgagtaaaggatgctaa	9	6	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27956362	C	C	27956362	1	2	55	0	1	0	0	0	0	0	0	0	5931	232	8	5		5	FGR	1	27956362	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2244237	27956362	221294259	8	61211											
C1orf212	113444	broad.mit.edu	37	chr1	35321354	35321354	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctttcggggcaaattctagCttgtccttaaggctcaccac	9	12	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35321354	G	G	35321354	1	3	55	0	1	0	0	0	0	0	0	0	2051	796	28	4		4	C1orf212	1	35321354	5'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7364992	35321354	213929267	9	61212											
EIF2C4	192670	broad.mit.edu	37	chr1	36315753	36315753	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattacttttttttgtttttTgtaggtagggaaaagtggca	10	2	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36315753	C	C	36315753	1	2	55	0	1	0	0	0	0	0	0	0	5048	1827	63	5		5	EIF2C4	1	36315753	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	994399	36315753	212934868	10	61213											
MACF1	23499	broad.mit.edu	37	chr1	39900087	39900087	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttgctcacataggAaaagacagagtctctaatac	6	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39900087	G	G	39900087	3	3	55	1	0	0	0	0	1	0	0	0	9232	260	9	5	17786	5	MACF1	1	39900087	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3584334	39900087	209350534	11	61214											
MYCL1	4610	broad.mit.edu	37	chr1	40362894	40362894	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaagaatgcaagcctttAttgtgtgtgcaccggctgca	10	10	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40362894	G	G	40362894	1	3	55	0	1	0	0	0	0	0	0	0	10114	464	16	5		5	MYCL1	1	40362894	3'UTR	SNP	A	TCGA-17-Z023-01A-01W-0746-08	462807	40362894	208887727	12	61215											
HIVEP3	59269	broad.mit.edu	37	chr1	41979227	41979227	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggagtctgcccgcagtgCatgtggtgggccaggcgggg	20	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41979227	T	T	41979227	3	4	55	1	0	0	0	0	1	0	0	0	7255	710	25	4	1563	4	HIVEP3	1	41979227	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1616333	41979227	207271394	13	61216											
HIVEP3	59269	broad.mit.edu	37	chr1	42048566	42048566	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccccttttgttttcaaacCcttcttggtctttttggtaa	5	11	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42048566	T	T	42048566	3	4	55	1	0	0	0	0	1	0	0	0	7255	623	22	4	5341	4	HIVEP3	1	42048566	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	69339	42048566	207202055	14	61217											
RIMKLA	284716	broad.mit.edu	37	chr1	42880470	42880470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctgtgcttcagctcaggGagttgcagagagcgtctata	14	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42880470	T	T	42880470	3	4	55	1	0	0	0	0	1	0	0	0	13476	1174	41	3	1019	3	RIMKLA	1	42880470	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	831904	42880470	206370151	15	61218											
ELAVL4	1996	broad.mit.edu	37	chr1	50610672	50610673	+	Nonsense_Mutation	DNP	CC	AA	AA													ggtgtcaaatggtccgacatCcaatacaagcaatggaccct							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50610673	AA	AA	50610672	4	1	55	1	0	0	0	0	0	1	0	0	5094	855	30	3	158	3	ELAVL4	1	50610672	Nonsense_Mutation	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	7730202	50610672	198639949	16	61219											
MRPL37	51253	broad.mit.edu	37	chr1	54681773	54681773	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctgttccttacactccAcagcttctgatttgttttcc	6	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54681773	T	T	54681773	1	4	55	0	1	0	0	0	0	0	0	0	9894	174	6	5		5	MRPL37	1	54681773	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4071101	54681773	194568848	17	61220											
DAB1	1600	broad.mit.edu	37	chr1	57535035	57535035	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggcaagcaattttatacctGataaatgttttcttccgttt	6	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57535035	C	C	57535035	3	2	55	1	0	0	0	0	1	0	0	0	4250	1299	45	4	1034	4	DAB1	1	57535035	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2853262	57535035	191715586	18	61221											
DAB1	1600	broad.mit.edu	37	chr1	59002177	59002177	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaattaaaaacaactcttaCtacttactgcttcatattcc	1	11	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59002177	T	T	59002177	1	4	55	0	1	0	0	0	0	0	0	0	4250	580	20	4		4	DAB1	1	59002177	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1467142	59002177	190248444	19	61222											
PGM1	5236	broad.mit.edu	37	chr1	64089164	64089164	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaatggatttctgggacAtatagaaaaatggaagaagg	13	2	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64089164	T	T	64089164	1	4	55	0	1	0	0	0	0	0	0	0	11892	204	8	5		5	PGM1	1	64089164	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	5086987	64089164	185161457	20	61223											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67236238	67236238	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttaaaaatgatatttgataAcctggcattgtcttcaattc	5	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67236238	T	T	67236238	1	4	55	0	1	0	0	0	0	0	0	0	15841	58	2	5		5	TCTEX1D1	1	67236238	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3147074	67236238	182014383	21	61224											
WDR78	79819	broad.mit.edu	37	chr1	67288077	67288077	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaacagtaggcatatttctCagttcatacacagaaacctg	6	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67288077	G	G	67288077	2	3	55	1	0	0	0	0	0	0	0	1	17455	813	29	4		4	WDR78	1	67288077	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	51839	67288077	181962544	22	61225											
PIGK	10026	broad.mit.edu	37	chr1	77558315	77558315	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaattaaacacattgggaTagcaacaatggtaaagactt	7	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77558315	A	A	77558315	1	1	55	0	1	0	0	0	0	0	0	0	11985	1421	49	5		5	PIGK	1	77558315	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	10270238	77558315	171692306	23	61226											
AK5	26289	broad.mit.edu	37	chr1	77763344	77763344	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattaagaaagaagatccaCagtaccagcagcaataggaa	8	7	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77763344	T	T	77763344	2	4	55	1	0	0	0	0	0	0	0	1	443	477	17	4		4	AK5	1	77763344	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	205029	77763344	171487277	24	61227											
GIPC2	54810	broad.mit.edu	37	chr1	78509353	78509353	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcccctggataaaccaAcagctggcagcctttccgtg	10	13	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78509353	G	G	78509353	1	3	55	0	1	0	0	0	0	0	0	0	6457	58	2	5		5	GIPC2	1	78509353	5'Flank	SNP	A	TCGA-17-Z023-01A-01W-0746-08	746009	78509353	170741268	25	61228											
PTGFR	5737	broad.mit.edu	37	chr1	79002132	79002132	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatggaaatcattctctGgaaacctgtgaaacaacact	6	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79002132	T	T	79002132	2	4	55	1	0	0	0	0	0	0	0	1	12855	1335	47	2		2	PTGFR	1	79002132	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	492779	79002132	170248489	26	61229											
WDR63	126820	broad.mit.edu	37	chr1	85550363	85550363	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgaggaagaatcagttacGgaatctacaaagcaggttag	11	5	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85550363	A	A	85550363	2	1	55	1	0	0	0	0	0	0	0	1	17441	1103	39	4		4	WDR63	1	85550363	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6548231	85550363	163700258	27	61230											
CNN3	1266	broad.mit.edu	37	chr1	95365110	95365110	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaattgcacaaattatcagAtgtcaacaatatacacaaca	3	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95365110	C	C	95365110	1	2	55	0	1	0	0	0	0	0	0	0	3643	348	12	5		5	CNN3	1	95365110	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	9814747	95365110	153885511	28	61231											
LPPR4	9890	broad.mit.edu	37	chr1	99771978	99771978	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagactgtggcctgtaaCagaagcaacagccagccccg	11	12	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99771978	G	G	99771978	3	3	55	1	0	0	0	0	1	0	0	0	9014	477	17	4	1730	4	LPPR4	1	99771978	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4406868	99771978	149478643	29	61232											
AGL	178	broad.mit.edu	37	chr1	100349873	100349873	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actatttgttgaatggatttTtttaatgtactttttttcaa	5	3	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349873	A	A	100349873	1	1	55	0	1	0	0	0	0	0	0	0	384	1856	64	5		5	AGL	1	100349873	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	577895	100349873	148900748	30	61233											
AGL	178	broad.mit.edu	37	chr1	100376370	100376370	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaatgggagaaagtgacaGagctagaaacagaggaatcc	12	5	0	5			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100376370	A	A	100376370	3	1	55	1	0	0	0	0	1	0	0	0	384	942	33	4	3978	4	AGL	1	100376370	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	26497	100376370	148874251	31	61234											
DBT	1629	broad.mit.edu	37	chr1	100681576	100681576	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctttgcctgtgaatacCggaggttttgatactagtat	10	6	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100681576	T	T	100681576	2	4	55	1	0	0	0	0	0	0	0	1	4291	639	23	4		4	DBT	1	100681576	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	305206	100681576	148569045	32	61235											
COL11A1	1301	broad.mit.edu	37	chr1	103427760	103427760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaagacctctttcccctGggaaaccacgtaatcctgct	8	14	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103427760	T	T	103427760	3	4	55	1	0	0	0	0	1	0	0	0	3699	1348	47	2	2446	2	COL11A1	1	103427760	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2746184	103427760	145822861	33	61236											
VAV3	10451	broad.mit.edu	37	chr1	108152588	108152588	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatctactggtttgggcacCtaggatataaaaaagcaaaa	8	6	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108152588	T	T	108152588	5	4	55	1	0	0	0	0	0	0	1	0	17260	695	24	4	587	4	VAV3	1	108152588	Splice_Site	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4724828	108152588	141098033	34	61237											
VAV3	10451	broad.mit.edu	37	chr1	108309024	108309024	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaatactaatcctcactAtaattacaagctaagaccca	2	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108309024	G	G	108309024	1	3	55	0	1	0	0	0	0	0	0	0	17260	464	16	5		5	VAV3	1	108309024	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	156436	108309024	140941597	35	61238											
PRPF38B	55119	broad.mit.edu	37	chr1	109242165	109242165	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagagcgatcaagagaaagGtccaaggaacagagaagtag	14	5	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109242165	C	C	109242165	3	2	55	1	0	0	0	0	1	0	0	0	12674	1252	44	4	1186	4	PRPF38B	1	109242165	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	933141	109242165	140008456	36	61239											
MOV10	4343	broad.mit.edu	37	chr1	113237591	113237591	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagttgtccccagattctaGttccttcccactcccgaaat	6	15	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113237591	C	C	113237591	1	2	55	0	1	0	0	0	0	0	0	0	9812	1044	36	4		4	MOV10	1	113237591	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3995426	113237591	136013030	37	61240											
FAM19A3	284467	broad.mit.edu	37	chr1	113269224	113269224	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaataggcattcccttctctAaccttaccctctcgcttctt	4	15	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113269224	T	T	113269224	1	4	55	0	1	0	0	0	0	0	0	0	5580	377	13	5		5	FAM19A3	1	113269224	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	31633	113269224	135981397	38	61241											
NBPF9	400818	broad.mit.edu	37	chr1	144169709	144169709	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctctctctctctctccctCcctctccctgtctttctctt	1	21	7	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144169709	T	T	144169709	1	4	55	0	1	0	0	0	0	0	0	0	10294	870	30	4		4	NBPF9	1	144169709	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	30900485	144169709	105080912	39	61242											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879555	144879555	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccttgaggctgttgtgctCctcacactctgaaaaaagac	8	11	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144879555	A	A	144879555	4	1	55	1	0	0	0	0	0	1	0	0	11737	864	30	3	3217	3	PDE4DIP	1	144879555	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	709846	144879555	104371066	40	61243											
PDE4DIP	9659	broad.mit.edu	37	chr1	145027288	145027289	+	Intron	INS	-	G	G													taatgaccttgataaaagatINSaactatggaaaggattcggc					rs148289148		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145027289	G	G	145027288	6	5	55	0	1	1	1	0	0	0	0	0	11737	1421	49	0		0	PDE4DIP	1	145027288	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	147733	145027288	104223333	41	61244											
PDE4DIP	9659	broad.mit.edu	37	chr1	145027809	145027809	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaccatcaccactcaccaCcaatgctgcctctgcaattt	3	17	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145027809	T	T	145027809	1	4	55	0	1	0	0	0	0	0	0	0	11737	522	18	4		4	PDE4DIP	1	145027809	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	521	145027809	104222812	42	61245											
NBPF10	100132406	broad.mit.edu	37	chr1	145267638	145267638	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgaaagaaattctctacTgcttagtagtcactgtctat	6	10	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145267638	G	G	145267638	1	3	55	0	1	0	0	0	0	0	0	0	10287	1595	55	5		5	NBPF10	1	145267638	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	239829	145267638	103982983	43	61246											
NBPF10	100132406	broad.mit.edu	37	chr1	145311563	145311563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctgtgtgtgtgtgtgtgTgtgtgtgtgtgtgtgtgtgt	19	2	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145311563	A	A	145311563	1	1	55	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145311563	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	43925	145311563	103939058	44	61247											
NBPF10	100132406	broad.mit.edu	37	chr1	145761964	145761964	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaattcttgagctcctcatCtattctcttaaggagagcta	6	9	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145761964	G	G	145761964	1	3	55	0	1	0	0	0	0	0	0	0	10287	928	32	4		4	NBPF10	1	145761964	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	450401	145761964	103488657	45	61248											
NBPF15	284565	broad.mit.edu	37	chr1	148556281	148556281	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggcgggcggtgagtccGggacccgcgggtacacagct	19	13	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148556281	T	T	148556281	1	4	55	0	1	0	0	0	0	0	0	0	10290	1131	39	1		1	NBPF15	1	148556281	5'Flank	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2794317	148556281	100694340	46	61249											
SV2A	9900	broad.mit.edu	37	chr1	149879873	149879873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcagaacaagggagaaatGgagtcaacctctgttaggac	11	8	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149879873	T	T	149879873	1	4	55	0	1	0	0	0	0	0	0	0	15535	1363	47	2		2	SV2A	1	149879873	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1323592	149879873	99370748	47	61250											
PRPF3	9129	broad.mit.edu	37	chr1	150319032	150319032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggatggtgcatctgtccGttcatcttatttcctccctg	10	11	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150319032	T	T	150319032	1	4	55	0	1	0	0	0	0	0	0	0	12671	1160	40	3		3	PRPF3	1	150319032	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	439159	150319032	98931589	48	61251											
ARNT	405	broad.mit.edu	37	chr1	150814757	150814757	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccaaagttcctgttacacTcaaacttctaaaaaatcttg	4	10	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150814757	A	A	150814757	1	1	55	0	1	0	0	0	0	0	0	0	969	1566	54	5		5	ARNT	1	150814757	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	495725	150814757	98435864	49	61252											
LASS2	29956	broad.mit.edu	37	chr1	150939980	150939980	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggagaggagagagaggTaagagcaaccagccgcaagg	17	7	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150939980	C	C	150939980	1	2	55	0	1	0	0	0	0	0	0	0	8711	1653	57	5		5	LASS2	1	150939980	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	125223	150939980	98310641	50	61253											
ADAR	103	broad.mit.edu	37	chr1	154562626	154562626	+	Intron	DEL	C	-	-													gagttaggaggacccccccgCcccaaaaaaggcaccaaaag							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154562626	-	-	154562626	6	5	55	0	1	1	0	1	0	0	0	0	281	754	26	0		0	ADAR	1	154562626	Intron	DEL	C	TCGA-17-Z023-01A-01W-0746-08	3622646	154562626	94687995	51	61254											
ASH1L	55870	broad.mit.edu	37	chr1	155313628	155313628	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcagggtctacatagaactCataatctgaaacagtataaa	6	8	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155313628	A	A	155313628	1	1	55	0	1	0	0	0	0	0	0	0	1045	841	29	3		3	ASH1L	1	155313628	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	751002	155313628	93936993	52	61255											
ARHGEF2	9181	broad.mit.edu	37	chr1	155934701	155934701	+	Intron	DEL	G	-	-													ctcaaaaaaaaaaaaaaaaaGaaaaagaaaaataaagaagg							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155934701	-	-	155934701	6	5	55	0	1	1	0	1	0	0	0	0	905	957	33	0		0	ARHGEF2	1	155934701	Intron	DEL	G	TCGA-17-Z023-01A-01W-0746-08	621073	155934701	93315920	53	61256											
LMNA	4000	broad.mit.edu	37	chr1	156096606	156096606	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactgggatgcagccactcCtgtgcttggggaacctggag	14	12	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156096606	T	T	156096606	1	4	55	0	1	0	0	0	0	0	0	0	8922	696	24	4		4	LMNA	1	156096606	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	161905	156096606	93154015	54	61257											
SEMA4A	64218	broad.mit.edu	37	chr1	156126379	156126380	+	Intron	DNP	GG	TC	TC													gaacatggtgaggagtccagGgataaagagtgtgggctggg							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	156126380	TC	TC	156126379	1	4	55	0	1	0	0	0	0	0	0	0	14144	1247	43	2		2	SEMA4A	1	156126379	Intron	DNP	GG	TCGA-17-Z023-01A-01W-0746-08	29773	156126379	93124242	55	61258											
SEMA4A	64218	broad.mit.edu	37	chr1	156144519	156144519	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagtacatatcaccctcagAaggagctttcttacagctgg	8	12	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156144519	T	T	156144519	1	4	55	0	1	0	0	0	0	0	0	0	14144	261	9	5		5	SEMA4A	1	156144519	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	18140	156144519	93106102	56	61259											
RHBG	57127	broad.mit.edu	37	chr1	156352690	156352690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggattttctagaggaagGggcatgggatcctataagcc	13	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156352690	T	T	156352690	1	4	55	0	1	0	0	0	0	0	0	0	13433	1247	43	2		2	RHBG	1	156352690	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	208171	156352690	92897931	57	61260											
ARHGEF11	9826	broad.mit.edu	37	chr1	156917106	156917106	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctccttactgtgaatctcTatgagttcaggcaggttcgg	12	9	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156917106	C	C	156917106	3	2	55	1	0	0	0	0	1	0	0	0	898	1512	53	5	2274	5	ARHGEF11	1	156917106	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	564416	156917106	92333515	58	61261											
ETV3L	440695	broad.mit.edu	37	chr1	157069071	157069071	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcgatgacatggcggaacTcttccttctgcagcagctcc	11	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157069071	C	C	157069071	3	2	55	1	0	0	0	0	1	0	0	0	5322	1551	54	5	943	5	ETV3L	1	157069071	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	151965	157069071	92181550	59	61262											
FCRL1	115350	broad.mit.edu	37	chr1	157768055	157768057	+	Intron	DEL	TTA	-	-													tgcaaacacagagacacatgTtatttatctgaaattgcatc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	157768057	-	-	157768055	6	5	55	0	1	1	0	1	0	0	0	0	5851	1740	60	0		0	FCRL1	1	157768055	Intron	DEL	TTA	TCGA-17-Z023-01A-01W-0746-08	698984	157768055	91482566	60	61263											
CD1C	911	broad.mit.edu	37	chr1	158260705	158260705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggatcaatgaagaagCcagaatggttgccatttgag	12	5	1	5			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158260705	A	A	158260705	1	1	55	0	1	0	0	0	0	0	0	0	3006	754	26	3		3	CD1C	1	158260705	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	492650	158260705	90989916	61	61264											
SPTA1	6708	broad.mit.edu	37	chr1	158583761	158583761	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgaagctttattgacCtgtcacaaaactatcagagg	8	9	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158583761	G	G	158583761	1	3	55	0	1	0	0	0	0	0	0	0	15234	696	24	4		4	SPTA1	1	158583761	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	323056	158583761	90666860	62	61265											
SPTA1	6708	broad.mit.edu	37	chr1	158607816	158607816	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacatttttgagctggtggCacatactctatccaggattc	8	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158607816	G	G	158607816	1	3	55	0	1	0	0	0	0	0	0	0	15234	725	25	4		4	SPTA1	1	158607816	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	24055	158607816	90642805	63	61266											
SPTA1	6708	broad.mit.edu	37	chr1	158651402	158651402	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaactggtcacccttcTccagggtcagctctaacagc	9	15	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158651402	C	C	158651402	3	2	55	1	0	0	0	0	1	0	0	0	15234	1551	54	5	7009	5	SPTA1	1	158651402	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	43586	158651402	90599219	64	61267											
OR10J3	441911	broad.mit.edu	37	chr1	159284283	159284283	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagtacatgggggtgtgaAgatgatggtccaggcgaata	16	4	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159284283	G	G	159284283	3	3	55	1	0	0	0	0	1	0	0	0	11005	72	3	5	824	5	OR10J3	1	159284283	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	632881	159284283	89966338	65	61268											
OR10J5	127385	broad.mit.edu	37	chr1	159505395	159505395	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatagtcccttgctcatgaTgacagtgtatctcaggggtc	10	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159505395	C	C	159505395	3	2	55	1	0	0	0	0	1	0	0	0	11006	1464	51	5	528	5	OR10J5	1	159505395	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	221112	159505395	89745226	66	61269											
KCNJ10	3766	broad.mit.edu	37	chr1	160017267	160017267	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgactttacccttgacaAtctttcacaggccccctgaa	5	14	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160017267	G	G	160017267	1	3	55	0	1	0	0	0	0	0	0	0	8114	116	4	5		5	KCNJ10	1	160017267	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	511872	160017267	89233354	67	61270											
SLAMF6	114836	broad.mit.edu	37	chr1	160460895	160460895	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atagctgctcaaggctctcaGacctgaggcaggctgttacc	11	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160460895	C	C	160460895	1	2	55	0	1	0	0	0	0	0	0	0	14481	957	33	4		4	SLAMF6	1	160460895	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	443628	160460895	88789726	68	61271											
CD48	962	broad.mit.edu	37	chr1	160681540	160681540	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccagacacgaatcccaaCctctggagcacatgcttcct	8	15	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160681540	T	T	160681540	3	4	55	1	0	0	0	0	1	0	0	0	3050	507	18	4	733	4	CD48	1	160681540	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	220645	160681540	88569081	69	61272											
HSPA6	3310	broad.mit.edu	37	chr1	161495567	161495567	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgatgaggctgtggcctaTggggctgctgtgcaggcggc	18	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161495567	C	C	161495567	2	2	55	1	0	0	0	0	0	0	0	1	7484	1471	51	5		5	HSPA6	1	161495567	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	814027	161495567	87755054	70	61273											
FCRLB	127943	broad.mit.edu	37	chr1	161696817	161696817	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccctcccggacgccgaccCtggcggtcagccctgcttcc	10	21	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161696817	T	T	161696817	1	4	55	0	1	0	0	0	0	0	0	0	5858	696	24	4		4	FCRLB	1	161696817	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	201250	161696817	87553804	71	61274											
RGS5	8490	broad.mit.edu	37	chr1	163138281	163138281	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttcacttttatttttctTgtggcagaaagaatactaat	5	6	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163138281	G	G	163138281	1	3	55	0	1	0	0	0	0	0	0	0	13417	1827	63	5		5	RGS5	1	163138281	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1441464	163138281	86112340	72	61275											
DPT	1805	broad.mit.edu	37	chr1	168683713	168683713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatttattccattttatgCaaataatagtctttattata	2	5	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168683713	A	A	168683713	1	1	55	0	1	0	0	0	0	0	0	0	4779	725	25	3		3	DPT	1	168683713	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5545432	168683713	80566908	73	61276											
C1orf112	55732	broad.mit.edu	37	chr1	169773226	169773226	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgtaatcagaatagtgaatCtgtgtattctgggtgtttac	10	6	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169773226	A	A	169773226	3	1	55	1	0	0	0	0	1	0	0	0	2005	913	32	3	337	3	C1orf112	1	169773226	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1089513	169773226	79477395	74	61277											
KIFAP3	22920	broad.mit.edu	37	chr1	170024427	170024427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcactactttcaaaatgtGcacaaataaagaacttacat	4	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170024427	T	T	170024427	1	4	55	0	1	0	0	0	0	0	0	0	8381	1334	46	3		3	KIFAP3	1	170024427	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	251201	170024427	79226194	75	61278											
RABGAP1L	9910	broad.mit.edu	37	chr1	174219850	174219850	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaagtttcaagaaactatAcagtgttggcataaagcctc	7	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174219850	G	G	174219850	1	3	55	0	1	0	0	0	0	0	0	0	13073	406	14	5		5	RABGAP1L	1	174219850	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4195423	174219850	75030771	76	61279											
TNN	63923	broad.mit.edu	37	chr1	175066708	175066708	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttctggtggggaaggagCagagcagcactgtcctgaca	16	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175066708	T	T	175066708	4	4	55	1	0	0	0	0	0	1	0	0	16446	711	25	4	1770	4	TNN	1	175066708	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	846858	175066708	74183913	77	61280											
ASTN1	460	broad.mit.edu	37	chr1	176847250	176847250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggggcctcacacaggcaGcccccataccacctgaacac	9	18	1	1	rs151190335	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176847250	T	T	176847250	1	4	55	0	1	0	0	0	0	0	0	0	1068	986	34	3		3	ASTN1	1	176847250	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1780542	176847250	72403371	78	61281											
FAM5B	57795	broad.mit.edu	37	chr1	177250007	177250007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaagcctgggctggtgcaCgtgatgttggccttgtcctt	13	10	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177250007	A	A	177250007	3	1	55	1	0	0	0	0	1	0	0	0	5644	535	19	3	1721	3	FAM5B	1	177250007	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	402757	177250007	72000614	79	61282											
NPHS2	7827	broad.mit.edu	37	chr1	179533708	179533708	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctggaaggtgagtctgggGtgagggcattccacatggag	17	7	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179533708	C	C	179533708	1	2	55	0	1	0	0	0	0	0	0	0	10678	1276	44	4		4	NPHS2	1	179533708	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2283701	179533708	69716913	80	61283											
NCF2	4688	broad.mit.edu	37	chr1	183556151	183556151	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacatggccatgatgcaagGcagtgaggaggtgtgagatg	17	5	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183556151	A	A	183556151	1	1	55	0	1	0	0	0	0	0	0	0	10312	1218	42	4		4	NCF2	1	183556151	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	4022443	183556151	65694470	81	61284											
CDC73	79577	broad.mit.edu	37	chr1	193110980	193110980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaagaaattgcttttagGtctttgtctgaagctatgtc	8	5	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193110980	T	T	193110980	3	4	55	1	0	0	0	0	1	0	0	0	3115	1275	44	3	539	3	CDC73	1	193110980	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9554829	193110980	56139641	82	61285											
CFHR2	3080	broad.mit.edu	37	chr1	196918790	196918790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtctcagtgagtaaatGccctgttcattaaatggatg	10	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196918790	T	T	196918790	1	4	55	0	1	0	0	0	0	0	0	0	3315	1334	46	3		3	CFHR2	1	196918790	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3807810	196918790	52331831	83	61286											
KDM5B	10765	broad.mit.edu	37	chr1	202743772	202743772	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaataagtccaagatcttcCtctccacatgtggaattttc	6	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202743772	T	T	202743772	3	4	55	1	0	0	0	0	1	0	0	0	8204	681	24	4	4360	4	KDM5B	1	202743772	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5824982	202743772	46506849	84	61287											
ATP2B4	493	broad.mit.edu	37	chr1	203696674	203696674	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggccagatcctctggttccGgggcctgaaccgtatccaga	12	13	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203696674	C	C	203696674	3	2	55	1	0	0	0	0	1	0	0	0	1146	1116	39	4	3358	4	ATP2B4	1	203696674	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	952902	203696674	45553947	85	61288											
CNTN2	6900	broad.mit.edu	37	chr1	205042109	205042109	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagcccagaaccatcgGgtctcctcccagtacctaaa	7	15	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205042109	C	C	205042109	1	2	55	0	1	0	0	0	0	0	0	0	3673	1247	43	4		4	CNTN2	1	205042109	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1345435	205042109	44208512	86	61289											
IL10	3586	broad.mit.edu	37	chr1	206945637	206945637	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaaagtcttcactctgctGaaggcatctcggagatctcg	10	10	5	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206945637	T	T	206945637	3	4	55	1	0	0	0	0	1	0	0	0	7689	1281	45	3	412	3	IL10	1	206945637	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1903528	206945637	42304984	87	61290											
CR1L	1379	broad.mit.edu	37	chr1	207890735	207890735	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattatattcatagcactgTcgcaggtcactaatatttca	5	8	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207890735	A	A	207890735	1	1	55	0	1	0	0	0	0	0	0	0	3873	1682	58	5		5	CR1L	1	207890735	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	945098	207890735	41359886	88	61291											
PLXNA2	5362	broad.mit.edu	37	chr1	208315681	208315682	+	Missense_Mutation	DNP	TC	GG	GG													tgttagcacttacctgtctcTcagacatgacgtacaggtag							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	208315682	GG	GG	208315681	3	3	55	1	0	0	0	0	1	0	0	0	12215	1551	54	5	4301	5	PLXNA2	1	208315681	Missense_Mutation	DNP	TC	TCGA-17-Z023-01A-01W-0746-08	424946	208315681	40934940	89	61292											
RPS6KC1	26750	broad.mit.edu	37	chr1	213436184	213436184	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaactgacctattggccaGgtttatcaaccatgcagatt	7	9	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213436184	A	A	213436184	1	1	55	0	1	0	0	0	0	0	0	0	13769	1015	35	4		4	RPS6KC1	1	213436184	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5120503	213436184	35814437	90	61293											
PTPN14	5784	broad.mit.edu	37	chr1	214705577	214705577	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaacttctccaccaattacTggtccctgggctctgtccag	7	16	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214705577	G	G	214705577	1	3	55	0	1	0	0	0	0	0	0	0	12889	1595	55	5		5	PTPN14	1	214705577	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1269393	214705577	34545044	91	61294											
USH2A	7399	broad.mit.edu	37	chr1	216062388	216062388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaatcggaggaactacagGtccaggttctgtaaagtaaa	11	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216062388	A	A	216062388	3	1	55	1	0	0	0	0	1	0	0	0	17162	1261	44	4	8133	4	USH2A	1	216062388	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1356811	216062388	33188233	92	61295											
NVL	4931	broad.mit.edu	37	chr1	224491431	224491431	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaagcctcaccccagcAattgcatgtgcaagtaatgt	8	12	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224491431	C	C	224491431	3	2	55	1	0	0	0	0	1	0	0	0	10875	126	5	5	1676	5	NVL	1	224491431	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	8429043	224491431	24759190	93	61296											
EPHX1	2052	broad.mit.edu	37	chr1	226032230	226032230	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacgacctgctgaccaacGtcatgctctactggacaaca	9	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226032230	A	A	226032230	3	1	55	1	0	0	0	0	1	0	0	0	5221	1145	40	4	1098	4	EPHX1	1	226032230	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1540799	226032230	23218391	94	61297											
OBSCN	84033	broad.mit.edu	37	chr1	228492933	228492933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgttgagtggaggaaGggacctgaaaccctcagaga	14	10	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228492933	T	T	228492933	1	4	55	0	1	0	0	0	0	0	0	0	10907	1015	35	2		2	OBSCN	1	228492933	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2460703	228492933	20757688	95	61298											
LYST	1130	broad.mit.edu	37	chr1	235897225	235897225	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctagaagatttagataatAatatactatataaaatttat	3	3	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235897225	G	G	235897225	1	3	55	0	1	0	0	0	0	0	0	0	9216	377	13	5		5	LYST	1	235897225	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	7404292	235897225	13353396	96	61299											
LYST	1130	broad.mit.edu	37	chr1	235971728	235971728	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgctcaacaacccccgccCccgccgccacccacacacat	4	24	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235971728	G	G	235971728	1	3	55	0	1	0	0	0	0	0	0	0	9216	638	22	4		4	LYST	1	235971728	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	74503	235971728	13278893	97	61300											
RYR2	6262	broad.mit.edu	37	chr1	237819147	237819147	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagaacttttcaaactGgcactgccttgcctgagtgc	9	11	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237819147	A	A	237819147	2	1	55	1	0	0	0	0	0	0	0	1	13880	1335	47	4		4	RYR2	1	237819147	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1847419	237819147	11431474	98	61301											
RYR2	6262	broad.mit.edu	37	chr1	237870119	237870119	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accttgaaacacaggagaagGagccagttgcaggcatgcca	12	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237870119	T	T	237870119	1	4	55	0	1	0	0	0	0	0	0	0	13880	1189	41	3		3	RYR2	1	237870119	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	50972	237870119	11380502	99	61302											
RGS7	6000	broad.mit.edu	37	chr1	241083729	241083729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggaggtggtggaagctaCaatgattttggcaattacaa	12	4	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241083729	A	A	241083729	1	1	55	0	1	0	0	0	0	0	0	0	13419	493	17	3		3	RGS7	1	241083729	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3213610	241083729	8166892	100	61303											
WDR64	128025	broad.mit.edu	37	chr1	241904891	241904891	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggttcctcacactcatgaAcgagaaatcaatgtcatgct	7	11	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241904891	C	C	241904891	3	2	55	1	0	0	0	0	1	0	0	0	17442	40	2	5	1407	5	WDR64	1	241904891	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	821162	241904891	7345730	101	61304											
ZNF238	10472	broad.mit.edu	37	chr1	244218033	244218033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataacagggtacagtatgaGccggcccatctggctcccct	10	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244218033	T	T	244218033	3	4	55	1	0	0	0	0	1	0	0	0	17916	962	34	3	963	3	ZNF238	1	244218033	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2313142	244218033	5032588	102	61305											
CNST	163882	broad.mit.edu	37	chr1	246784904	246784904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggtgaagttgagcagttgGattcaagagcacttcccctt	12	8	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246784904	T	T	246784904	3	4	55	1	0	0	0	0	1	0	0	0	3666	1174	41	3	559	3	CNST	1	246784904	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2566871	246784904	2465717	103	61306											
OR2M2	391194	broad.mit.edu	37	chr1	248343905	248343905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatctgctgtatagtaatGcttgttttccctgttgcaat	7	8	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343905	T	T	248343905	3	4	55	1	0	0	0	0	1	0	0	0	11104	1319	46	3	620	3	OR2M2	1	248343905	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1559001	248343905	906716	104	61307											
OR2G6	391211	broad.mit.edu	37	chr1	248685282	248685282	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggttgggctcgtctgagtGtattctcttggccgtcatgg	16	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248685282	A	A	248685282	3	1	55	1	0	0	0	0	1	0	0	0	11094	1377	48	4	337	4	OR2G6	1	248685282	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	341377	248685282	565339	105	61308											
OR2G6	391211	broad.mit.edu	37	chr1	248685554	248685554	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcagaactctttgtggccAgtgtagtctttctaattgtc	10	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248685554	T	T	248685554	3	4	55	1	0	0	0	0	1	0	0	0	11094	188	7	5	609	5	OR2G6	1	248685554	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	272	248685554	565067	106	61309											
OR2T11	127077	broad.mit.edu	37	chr1	248789751	248789751	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttttgcgaccttcagcagAgggcatgcggtggatggtta	14	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248789751	T	T	248789751	3	4	55	1	0	0	0	0	1	0	0	0	11112	304	11	5	275	5	OR2T11	1	248789751	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	104197	248789751	460870	107	61310											
OR14I1	401994	broad.mit.edu	37	chr1	248845559	248845559	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcagctcccagataccaGaaaactccatcagcaggaat	7	14	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248845559	T	T	248845559	3	4	55	1	0	0	0	0	1	0	0	0	11041	942	33	3	892	3	OR14I1	1	248845559	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	55808	248845559	405062	108	61311											
SH3BP5L	80851	broad.mit.edu	37	chr1	249106308	249106308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcggtgtcgggggcggggcCgggccccaggctgctgccct	19	14	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249106308	A	A	249106308	3	1	55	1	0	0	0	0	1	0	0	0	14361	652	23	1	212	1	SH3BP5L	1	249106308	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	260749	249106308	144313	109	61312											
SH3YL1	26751	broad.mit.edu	37	chr2	246618	246618	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaagagaggggagggaggGaagggaggaggaaggggagg	28	0	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246618	T	T	246618	1	4	55	0	1	0	0	0	0	0	0	0	14376	1189	41	3		3	SH3YL1	2	246618	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08		246618	242952755	110	61313											
GREB1	9687	broad.mit.edu	37	chr2	11765445	11765446	+	Intron	INS	-	A	A													ataaagagtgaaggtcagacINStttgaatctctcgtttcacc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11765446	A	A	11765445	6	5	55	0	1	1	1	0	0	0	0	0	6826	580	20	0		0	GREB1	2	11765445	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	11518827	11765445	231433928	111	61314											
PLB1	151056	broad.mit.edu	37	chr2	28754912	28754912	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggaaagacatgaaaacaaaGacattattttggttcaaggt	9	4	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28754912	C	C	28754912	1	2	55	0	1	0	0	0	0	0	0	0	12119	957	33	4		4	PLB1	2	28754912	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	16989467	28754912	214444461	112	61315											
FAM179A	165186	broad.mit.edu	37	chr2	29206313	29206313	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtctgtcttctttcacTaaacattacgctgtggcatc	8	10	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29206313	A	A	29206313	1	1	55	0	1	0	0	0	0	0	0	0	5550	1537	53	5		5	FAM179A	2	29206313	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	451401	29206313	213993060	113	61316											
SRD5A2	6716	broad.mit.edu	37	chr2	31756637	31756637	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaatgaaaggaggggcaTttaatttctaaatctaagaa	8	4	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31756637	C	C	31756637	1	2	55	0	1	0	0	0	0	0	0	0	15257	1508	52	5		5	SRD5A2	2	31756637	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2550324	31756637	211442736	114	61317											
LTBP1	4052	broad.mit.edu	37	chr2	33482463	33482463	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgtatttgtcaagccaaaGaacactcaacctgttgctaa	6	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33482463	T	T	33482463	3	4	55	1	0	0	0	0	1	0	0	0	9160	933	33	3	2381	3	LTBP1	2	33482463	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1725826	33482463	209716910	115	61318											
RASGRP3	25780	broad.mit.edu	37	chr2	33749054	33749054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagtgggtccagttgatgGttcttagcaaaccaaccccc	9	12	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33749054	T	T	33749054	3	4	55	1	0	0	0	0	1	0	0	0	13184	1261	44	3	647	3	RASGRP3	2	33749054	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	266591	33749054	209450319	116	61319											
VIT	5212	broad.mit.edu	37	chr2	37002020	37002020	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccagaagtacaaccaggcAcagagagctcggccgacttc	10	15	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37002020	C	C	37002020	1	2	55	0	1	0	0	0	0	0	0	0	17298	174	6	5		5	VIT	2	37002020	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3252966	37002020	206197353	117	61320											
MAP4K3	8491	broad.mit.edu	37	chr2	39487787	39487787	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtagaatttggattgacCgtctcaaatcgaaccacttg	10	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39487787	A	A	39487787	2	1	55	1	0	0	0	0	0	0	0	1	9353	639	23	1		1	MAP4K3	2	39487787	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2485767	39487787	203711586	118	61321											
PRKCE	5581	broad.mit.edu	37	chr2	46100595	46100596	+	Intron	DEL	AA	-	-													ccacatagatagtagactgcAaaaaaaaaaaaaaaaaaaaa					rs112999212		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46100596	-	-	46100595	6	5	55	0	1	1	0	1	0	0	0	0	12617	145	5	0		0	PRKCE	2	46100595	Intron	DEL	AA	TCGA-17-Z023-01A-01W-0746-08	6612808	46100595	197098778	119	61322											
MCFD2	90411	broad.mit.edu	37	chr2	47136092	47136092	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaggaggactgagcaTgcccttgccgctggctcagc	14	11	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47136092	A	A	47136092	1	1	55	0	1	0	0	0	0	0	0	0	9474	1479	51	5		5	MCFD2	2	47136092	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1035497	47136092	196063281	120	61323											
TTC7A	57217	broad.mit.edu	37	chr2	47287969	47287970	+	Missense_Mutation	DNP	GG	TT	TT													ttctgcatccaggaggcggcGggcctcttccccacttctca							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	47287970	TT	TT	47287969	3	4	55	1	0	0	0	0	1	0	0	0	16838	1103	39	1	2288	1	TTC7A	2	47287969	Missense_Mutation	DNP	GG	TCGA-17-Z023-01A-01W-0746-08	151877	47287969	195911404	121	61324											
FAM161A	84140	broad.mit.edu	37	chr2	62067078	62067078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatgggtctggctttaaatCgatttgttttctttttatac	8	5	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62067078	A	A	62067078	3	1	55	1	0	0	0	0	1	0	0	0	5518	884	31	3	937	3	FAM161A	2	62067078	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	14779109	62067078	181132295	122	61325											
PROKR1	10887	broad.mit.edu	37	chr2	68872970	68872970	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagatggagaccaccatggGgttcatggatgacaatgcca	12	10	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68872970	A	A	68872970	3	1	55	1	0	0	0	0	1	0	0	0	12658	1232	43	4	19	4	PROKR1	2	68872970	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6805892	68872970	174326403	123	61326											
AAK1	22848	broad.mit.edu	37	chr2	69769785	69769785	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgctggttcatcaggtttAccacctggccacctgagggg	14	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69769785	C	C	69769785	3	2	55	1	0	0	0	0	1	0	0	0	16	391	14	5	2553	5	AAK1	2	69769785	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	896815	69769785	173429588	124	61327											
NAGK	55577	broad.mit.edu	37	chr2	71300477	71300477	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctctcccaccccctgccAcccctggctgggaatcagga	8	21	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71300477	T	T	71300477	1	4	55	0	1	0	0	0	0	0	0	0	10236	174	6	5		5	NAGK	2	71300477	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1530692	71300477	171898896	125	61328											
ZNF638	27332	broad.mit.edu	37	chr2	71655661	71655661	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttactagagcaataaattagGactttctttttaaagctaaa	5	5	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71655661	C	C	71655661	1	2	55	0	1	0	0	0	0	0	0	0	18182	1189	41	4		4	ZNF638	2	71655661	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	355184	71655661	171543712	126	61329											
DYSF	8291	broad.mit.edu	37	chr2	71778303	71778303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtaagccggctggagcCctggcaagggcaggatgcca	16	11	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71778303	A	A	71778303	1	1	55	0	1	0	0	0	0	0	0	0	4899	638	22	2		2	DYSF	2	71778303	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	122642	71778303	171421070	127	61330											
DYSF	8291	broad.mit.edu	37	chr2	71788996	71788996	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgccctggccctgaaGctcggccacagtgagctccc	13	16	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71788996	A	A	71788996	2	1	55	1	0	0	0	0	0	0	0	1	4899	962	34	4		4	DYSF	2	71788996	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	10693	71788996	171410377	128	61331											
FAM176A	84141	broad.mit.edu	37	chr2	75745300	75745300	+	5'UTR	DEL	G	-	-													gggacctcctggaggtgcttGgctgaatcaacgtggccact							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75745300	-	-	75745300	6	5	55	0	1	1	0	1	0	0	0	0	5544	1363	47	0		0	FAM176A	2	75745300	5'UTR	DEL	G	TCGA-17-Z023-01A-01W-0746-08	3956304	75745300	167454073	129	61332											
REG1A	5967	broad.mit.edu	37	chr2	79350329	79350329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttctcctttgtctgcaaGttcaaaaactagaggcaact	7	9	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79350329	T	T	79350329	3	4	55	1	0	0	0	0	1	0	0	0	13318	1020	36	3	507	3	REG1A	2	79350329	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3605029	79350329	163849044	130	61333											
REG3A	5068	broad.mit.edu	37	chr2	79386021	79386021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgacaccccttcatcttcCcttatgttttcagaaattct	3	14	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79386021	A	A	79386021	1	1	55	0	1	0	0	0	0	0	0	0	13320	638	22	2		2	REG3A	2	79386021	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	35692	79386021	163813352	131	61334											
CTNNA2	1496	broad.mit.edu	37	chr2	79878656	79878656	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagatgattatttctaaCtgattacatgtgttcccata	5	7	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79878656	A	A	79878656	1	1	55	0	1	0	0	0	0	0	0	0	4047	580	20	3		3	CTNNA2	2	79878656	5'Flank	SNP	C	TCGA-17-Z023-01A-01W-0746-08	492635	79878656	163320717	132	61335											
CTNNA2	1496	broad.mit.edu	37	chr2	80772119	80772120	+	Missense_Mutation	DNP	GC	TT	TT													caatacaggttgccaatttgGcctgttccatctccaacaat							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	80772120	TT	TT	80772119	3	4	55	1	0	0	0	0	1	0	0	0	4047	1203	42	3	1129	3	CTNNA2	2	80772119	Missense_Mutation	DNP	GC	TCGA-17-Z023-01A-01W-0746-08	893463	80772119	162427254	133	61336											
CTNNA2	1496	broad.mit.edu	37	chr2	80819157	80819157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgttgctagtcttgtgtcCcaataacaaaaggcgtgcag	10	9	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80819157	A	A	80819157	1	1	55	0	1	0	0	0	0	0	0	0	4047	638	22	2		2	CTNNA2	2	80819157	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	47038	80819157	162380216	134	61337											
CTNNA2	1496	broad.mit.edu	37	chr2	80831126	80831126	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacaacactagactcctggaCaaaggatatggtaggttggt	11	7	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80831126	G	G	80831126	1	3	55	0	1	0	0	0	0	0	0	0	4047	493	17	4		4	CTNNA2	2	80831126	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	11969	80831126	162368247	135	61338											
CTNNA2	1496	broad.mit.edu	37	chr2	80831332	80831332	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagggaagggtgggcacaTgctgagtggagtcactaatt	16	5	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80831332	C	C	80831332	1	2	55	0	1	0	0	0	0	0	0	0	4047	1479	51	5		5	CTNNA2	2	80831332	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	206	80831332	162368041	136	61339											
POLR1A	25885	broad.mit.edu	37	chr2	86332736	86332736	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcctggactcaagaggataGactgggcaaaagcgcttctg	13	9	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86332736	C	C	86332736	1	2	55	0	1	0	0	0	0	0	0	0	12304	957	33	4		4	POLR1A	2	86332736	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5501404	86332736	156866637	137	61340											
VWA3B	200403	broad.mit.edu	37	chr2	98858655	98858655	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttgtccccagctctttgTttcattcatcacttatgtat	5	11	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98858655	C	C	98858655	1	2	55	0	1	0	0	0	0	0	0	0	17368	1740	60	5		5	VWA3B	2	98858655	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	12525919	98858655	144340718	138	61341											
CNGA3	1261	broad.mit.edu	37	chr2	99012586	99012586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatcatccactggaatgCctgcatctactttgccattt	5	13	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99012586	A	A	99012586	3	1	55	1	0	0	0	0	1	0	0	0	3630	739	26	3	979	3	CNGA3	2	99012586	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	153931	99012586	144186787	139	61342											
INPP4A	3631	broad.mit.edu	37	chr2	99187105	99187105	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctcaaaggtccgagggaagGagaacacacagggctggaag	16	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99187105	C	C	99187105	1	2	55	0	1	0	0	0	0	0	0	0	7822	1189	41	4		4	INPP4A	2	99187105	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	174519	99187105	144012268	140	61343											
MITD1	129531	broad.mit.edu	37	chr2	99788098	99788098	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctattttaatttgcttgtGatattttccatctataaaac	3	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99788098	A	A	99788098	3	1	55	1	0	0	0	0	1	0	0	0	9688	1290	45	4	504	4	MITD1	2	99788098	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	600993	99788098	143411275	141	61344											
AFF3	3899	broad.mit.edu	37	chr2	100690798	100690798	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaccctcttgttcttgccActctctgtgttctcccaaag	6	14	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100690798	T	T	100690798	1	4	55	0	1	0	0	0	0	0	0	0	358	174	6	5		5	AFF3	2	100690798	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	902700	100690798	142508575	142	61345											
RPL31	6160	broad.mit.edu	37	chr2	101619290	101619290	+	Intron	DEL	C	-	-													tgtgagtatccctctagccgCcctgggtctcgaactcacgc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101619290	-	-	101619290	6	5	55	0	1	1	0	1	0	0	0	0	13692	754	26	0		0	RPL31	2	101619290	Intron	DEL	C	TCGA-17-Z023-01A-01W-0746-08	928492	101619290	141580083	143	61346											
SLC9A4	389015	broad.mit.edu	37	chr2	103095660	103095660	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagcctgatctccgccgtgGacccagtggccgtgctagcc	13	16	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103095660	C	C	103095660	3	2	55	1	0	0	0	0	1	0	0	0	14830	1174	41	4	625	4	SLC9A4	2	103095660	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1476370	103095660	140103713	144	61347											
MERTK	10461	broad.mit.edu	37	chr2	112754908	112754908	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtatctcaccaggttgggtaGattatgccccctcttcaact	8	12	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112754908	C	C	112754908	3	2	55	1	0	0	0	0	1	0	0	0	9572	942	33	4	1497	4	MERTK	2	112754908	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9659248	112754908	130444465	145	61348											
DPP10	57628	broad.mit.edu	37	chr2	115948656	115948656	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagacttctgctcctatactAtagaaatggcttaacgaagg	9	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115948656	G	G	115948656	1	3	55	0	1	0	0	0	0	0	0	0	4767	464	16	5		5	DPP10	2	115948656	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3193748	115948656	127250717	146	61349											
MARCO	8685	broad.mit.edu	37	chr2	119727533	119727533	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgcacatggtcaagatgTagaaaaggccgtgtgctcac	13	9	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119727533	C	C	119727533	1	2	55	0	1	0	0	0	0	0	0	0	9403	1653	57	5		5	MARCO	2	119727533	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3778877	119727533	123471840	147	61350											
CLASP1	23332	broad.mit.edu	37	chr2	122176272	122176272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcgcggctgcacccctgaCtcatgctgggtcgagggata	13	12	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122176272	A	A	122176272	3	1	55	1	0	0	0	0	1	0	0	0	3485	565	20	3	2466	3	CLASP1	2	122176272	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2448739	122176272	121023101	148	61351											
CNTNAP5	129684	broad.mit.edu	37	chr2	125494979	125494979	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtgaaagacatcagcctCtatgaagacccatgggagga	11	10	2	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125494979	T	T	125494979	1	4	55	0	1	0	0	0	0	0	0	0	3682	928	32	4		4	CNTNAP5	2	125494979	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3318707	125494979	117704394	149	61352											
NCKAP5	344148	broad.mit.edu	37	chr2	133632008	133632008	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattttaaagatgacgtagGgcccagctgtaggatatgcc	12	7	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133632008	A	A	133632008	1	1	55	0	1	0	0	0	0	0	0	0	10318	1247	43	4		4	NCKAP5	2	133632008	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8137029	133632008	109567365	150	61353											
YSK4	80122	broad.mit.edu	37	chr2	135744396	135744396	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catatctcacggtaatacgtGttttcatccctttcagtctc	5	12	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135744396	A	A	135744396	2	1	55	1	0	0	0	0	0	0	0	1	17622	1368	48	4		4	YSK4	2	135744396	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2112388	135744396	107454977	151	61354											
THSD7B	80731	broad.mit.edu	37	chr2	138169160	138169160	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataagcatttaatatcttaAtgtctcttgttggaacaggg	9	5	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138169160	T	T	138169160	1	4	55	0	1	0	0	0	0	0	0	0	16003	116	4	5		5	THSD7B	2	138169160	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2424764	138169160	105030213	152	61355											
LRP1B	53353	broad.mit.edu	37	chr2	140995833	140995833	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctacatttattcctccaTtgataataggttgtcttcta	4	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140995833	C	C	140995833	3	2	55	1	0	0	0	0	1	0	0	0	9042	1493	52	5	363	5	LRP1B	2	140995833	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2826673	140995833	102203540	153	61356											
LRP1B	53353	broad.mit.edu	37	chr2	141259351	141259351	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagtttctctcatctgaacCatcgccacagtcatccttat	5	14	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141259351	G	G	141259351	3	3	55	1	0	0	0	0	1	0	0	0	9042	594	21	4	5192	4	LRP1B	2	141259351	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	263518	141259351	101940022	154	61357											
ARHGAP15	55843	broad.mit.edu	37	chr2	144466423	144466423	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgccaagacaaacagaacAccagctttatgaaagcctga	7	12	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144466423	T	T	144466423	1	4	55	0	1	0	0	0	0	0	0	0	868	174	6	5		5	ARHGAP15	2	144466423	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3207072	144466423	98732950	155	61358											
ZEB2	9839	broad.mit.edu	37	chr2	145182142	145182142	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagttcagtattcttgagCgtcacaggtaaattaggggt	12	5	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145182142	T	T	145182142	1	4	55	0	1	0	0	0	0	0	0	0	17750	783	27	4		4	ZEB2	2	145182142	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	715719	145182142	98017231	156	61359											
EPC2	26122	broad.mit.edu	37	chr2	149447959	149447959	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcgtaagtttgttaattcAttgttttctgtttgtacttt	7	5	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149447959	T	T	149447959	1	4	55	0	1	0	0	0	0	0	0	0	5203	232	8	5		5	EPC2	2	149447959	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4265817	149447959	93751414	157	61360											
TANK	10010	broad.mit.edu	37	chr2	162043605	162043605	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaccaaaagagagcaagaGtgaatatattaaatcagaga	8	4	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162043605	A	A	162043605	1	1	55	0	1	0	0	0	0	0	0	0	15665	1044	36	4		4	TANK	2	162043605	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	12595646	162043605	81155768	158	61361											
DPP4	1803	broad.mit.edu	37	chr2	162902240	162902240	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgctttgggaagtcctaAtctagcagaggtggcatatt	12	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162902240	G	G	162902240	1	3	55	0	1	0	0	0	0	0	0	0	4769	116	4	5		5	DPP4	2	162902240	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	858635	162902240	80297133	159	61362											
GCG	2641	broad.mit.edu	37	chr2	163000564	163000564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattttggtctgaatcaacCagtttataaagtccctggcg	9	8	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163000564	A	A	163000564	3	1	55	1	0	0	0	0	1	0	0	0	6352	595	21	2	41	2	GCG	2	163000564	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	98324	163000564	80198809	160	61363											
FAP	2191	broad.mit.edu	37	chr2	163030271	163030271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcctttgttgggagacCcatgaatctctctgtgtaga	9	9	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163030271	A	A	163030271	3	1	55	1	0	0	0	0	1	0	0	0	5730	623	22	2	302	2	FAP	2	163030271	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	29707	163030271	80169102	161	61364											
GRB14	2888	broad.mit.edu	37	chr2	165378328	165378328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaccagtgtgaagtaaaGctgagtagtgtttaaataat	10	3	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165378328	T	T	165378328	1	4	55	0	1	0	0	0	0	0	0	0	6823	986	34	3		3	GRB14	2	165378328	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2348057	165378328	77821045	162	61365											
SCN3A	6328	broad.mit.edu	37	chr2	165947561	165947561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgtaatttggaacaagCagatcatgctgttgccaaag	11	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165947561	A	A	165947561	3	1	55	1	0	0	0	0	1	0	0	0	14031	710	25	3	904	3	SCN3A	2	165947561	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	569233	165947561	77251812	163	61366											
XIRP2	129446	broad.mit.edu	37	chr2	168099706	168099706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaggtgatatttccaggGgcattgctgatcaagaaatc	11	6	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168099706	T	T	168099706	3	4	55	1	0	0	0	0	1	0	0	0	17557	1232	43	2	1834	2	XIRP2	2	168099706	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2152145	168099706	75099667	164	61367											
XIRP2	129446	broad.mit.edu	37	chr2	168100623	168100623	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctctgaagaagaaaaaggGgatgttaggcatcaaaaatg	12	5	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168100623	T	T	168100623	2	4	55	1	0	0	0	0	0	0	0	1	17557	1219	43	2		2	XIRP2	2	168100623	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	917	168100623	75098750	165	61368											
LRP2	4036	broad.mit.edu	37	chr2	170013799	170013799	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattaagggaattaaatagtGatttatttaacaaaggggag	10	2	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170013799	A	A	170013799	1	1	55	0	1	0	0	0	0	0	0	0	9043	1305	45	4		4	LRP2	2	170013799	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1913176	170013799	73185574	166	61369											
PPIG	9360	broad.mit.edu	37	chr2	170471029	170471029	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattattttatttattttacAacctgttttaaattaacctt	1	5	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170471029	C	C	170471029	1	2	55	0	1	0	0	0	0	0	0	0	12425	145	5	5		5	PPIG	2	170471029	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	457230	170471029	72728344	167	61370											
PPIG	9360	broad.mit.edu	37	chr2	170487259	170487259	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgtctaaaaattgttgatCaaaacctttttgtttttatt	4	4	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170487259	T	T	170487259	1	4	55	0	1	0	0	0	0	0	0	0	12425	841	29	4		4	PPIG	2	170487259	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	16230	170487259	72712114	168	61371											
CIR1	9541	broad.mit.edu	37	chr2	175252428	175252428	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacctattatcatatgatTcttgttctttaagatattgc	4	7	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175252428	C	C	175252428	3	2	55	1	0	0	0	0	1	0	0	0	3463	1783	62	5	1236	5	CIR1	2	175252428	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4765169	175252428	67946945	169	61372											
CHN1	1123	broad.mit.edu	37	chr2	175665068	175665068	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgtaagccatatgttcttCattgtgcttgaacactaaaa	7	7	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175665068	A	A	175665068	1	1	55	0	1	0	0	0	0	0	0	0	3393	841	29	3		3	CHN1	2	175665068	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	412640	175665068	67534305	170	61373											
ATF2	1386	broad.mit.edu	37	chr2	175979488	175979488	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtgaaggtactgcctgctGaataattacacttgagtcag	11	7	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175979488	A	A	175979488	4	1	55	1	0	0	0	0	0	1	0	0	1084	1299	45	4	989	4	ATF2	2	175979488	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	314420	175979488	67219885	171	61374											
NFE2L2	4780	broad.mit.edu	37	chr2	178098810	178098810	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggagaaattcacctgtctCttcatctagttgtaactgag	9	8	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178098810	A	A	178098810	4	1	55	1	0	0	0	0	0	1	0	0	10463	922	32	3	1598	3	NFE2L2	2	178098810	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2119322	178098810	65100563	172	61375											
TTN	7273	broad.mit.edu	37	chr2	179391671	179391671	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatatttacagttcagaaAgattagtccgtgtgaaacgt	8	5	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179391671	T	T	179391671	1	4	55	0	1	0	0	0	0	0	0	0	16861	87	3	5		5	TTN	2	179391671	3'UTR	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1292861	179391671	63807702	173	61376											
TTN	7273	broad.mit.edu	37	chr2	179393311	179393311	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctcgccactgatttcacAagtaaagagaacattttgtc	8	9	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179393311	T	T	179393311	3	4	55	1	0	0	0	0	1	0	0	0	16861	130	5	5	824	5	TTN	2	179393311	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1640	179393311	63806062	174	61377											
TTN	7273	broad.mit.edu	37	chr2	179483162	179483162	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggttcttcccaagcaaggcTcacttcaccatcaaatgttt	6	12	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179483162	A	A	179483162	3	1	55	1	0	0	0	0	1	0	0	0	16861	1551	54	5	61114	5	TTN	2	179483162	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	89851	179483162	63716211	175	61378											
TTN	7273	broad.mit.edu	37	chr2	179540684	179540684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctttcttgggaatgaCcactttcttctctgtcactt	5	13	5	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179540684	A	A	179540684	3	1	55	1	0	0	0	0	1	0	0	0	16861	507	18	3	70063	3	TTN	2	179540684	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	57522	179540684	63658689	176	61379											
TTN	7273	broad.mit.edu	37	chr2	179592757	179592757	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatcatagagattttagctCtaaaggatacaaaggcaaga	9	5	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179592757	A	A	179592757	1	1	55	0	1	0	0	0	0	0	0	0	16861	928	32	3		3	TTN	2	179592757	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	52073	179592757	63606616	177	61380											
TTN	7273	broad.mit.edu	37	chr2	179592771	179592771	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagctctaaaggatacaaaGgcaagagtgatacatttaag	9	5	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179592771	C	C	179592771	1	2	55	0	1	0	0	0	0	0	0	0	16861	1015	35	4		4	TTN	2	179592771	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	14	179592771	63606602	178	61381											
TTN	7273	broad.mit.edu	37	chr2	179604758	179604758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacggctgcttgcaaagccCggcagatttgaattttcagg	11	11	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179604758	A	A	179604758	3	1	55	1	0	0	0	0	1	0	0	0	16861	652	23	1	91587	1	TTN	2	179604758	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	11987	179604758	63594615	179	61382											
TTN	7273	broad.mit.edu	37	chr2	179616533	179616533	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaagtcatttctggagTtggacaggcaattaatctac	8	8	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179616533	A	A	179616533	3	1	55	1	0	0	0	0	1	0	0	0	16861	1725	60	5	99703	5	TTN	2	179616533	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	11775	179616533	63582840	180	61383											
TTN	7273	broad.mit.edu	37	chr2	179629076	179629076	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgattaagtcaccatagaGacctcacagaagggagcatg	10	9	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179629076	A	A	179629076	1	1	55	0	1	0	0	0	0	0	0	0	16861	957	33	4		4	TTN	2	179629076	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	12543	179629076	63570297	181	61384											
SESTD1	91404	broad.mit.edu	37	chr2	179996808	179996808	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgcaaattgtgcttctAtaaaaatataattaaactgc	4	6	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179996808	G	G	179996808	1	3	55	0	1	0	0	0	0	0	0	0	14240	464	16	5		5	SESTD1	2	179996808	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	367732	179996808	63202565	182	61385											
DIRC1	116093	broad.mit.edu	37	chr2	189599547	189599547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacatggggtgggcattgCtgagtggtggcaagtaacag	16	6	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189599547	A	A	189599547	3	1	55	1	0	0	0	0	1	0	0	0	4573	797	28	3	217	3	DIRC1	2	189599547	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	9602739	189599547	53599826	183	61386											
CCDC150	284992	broad.mit.edu	37	chr2	197534689	197534689	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttggcttacagtgcttcTtactctcatcaaagttttat	6	8	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197534689	C	C	197534689	1	2	55	0	1	0	0	0	0	0	0	0	2811	1624	56	5		5	CCDC150	2	197534689	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	7935142	197534689	45664684	184	61387											
ANKRD44	91526	broad.mit.edu	37	chr2	197878439	197878439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgcccattgtaggcctGcaaagaagaaaccaatggct	11	9	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197878439	T	T	197878439	1	4	55	0	1	0	0	0	0	0	0	0	672	1334	46	3		3	ANKRD44	2	197878439	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	343750	197878439	45320934	185	61388											
FN1	2335	broad.mit.edu	37	chr2	216288754	216288754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttgagtccaaactgaaCaaaagcgatgcttcttgggc	9	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216288754	A	A	216288754	1	1	55	0	1	0	0	0	0	0	0	0	6020	493	17	3		3	FN1	2	216288754	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	18410315	216288754	26910619	186	61389											
TNS1	7145	broad.mit.edu	37	chr2	218750093	218750093	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaggccagtcttggcctcTggggacaaaaatgtcctccc	12	12	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	218750093	C	C	218750093	1	2	55	0	1	0	0	0	0	0	0	0	16466	1595	55	5		5	TNS1	2	218750093	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2461339	218750093	24449280	187	61390											
ACSL3	2181	broad.mit.edu	37	chr2	223806375	223806375	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtatggaagaaaataattAttctcttctggcatcagttt	7	5	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223806375	T	T	223806375	1	4	55	0	1	0	0	0	0	0	0	0	178	464	16	5		5	ACSL3	2	223806375	3'UTR	SNP	A	TCGA-17-Z023-01A-01W-0746-08	5056282	223806375	19392998	188	61391											
COL4A3	1285	broad.mit.edu	37	chr2	228155616	228155616	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaacggtatataggccacTgaaatatttacattttagtg	7	7	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228155616	A	A	228155616	1	1	55	0	1	0	0	0	0	0	0	0	3723	1595	55	5		5	COL4A3	2	228155616	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4349241	228155616	15043757	189	61392											
DNER	92737	broad.mit.edu	37	chr2	230253033	230253033	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcagtggcagttataaccAttgggctggtccaggcagct	15	9	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230253033	G	G	230253033	2	3	55	1	0	0	0	0	0	0	0	1	4707	214	8	5		5	DNER	2	230253033	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2097417	230253033	12946340	190	61393											
GIGYF2	26058	broad.mit.edu	37	chr2	233684583	233684583	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaagaaattgcattaaggcGacagcgagaagaggaagaaa	13	5	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233684583	C	C	233684583	3	2	55	1	0	0	0	0	1	0	0	0	6442	1058	37	4	2561	4	GIGYF2	2	233684583	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3431550	233684583	9514790	191	61394											
UGT1A10	54575	broad.mit.edu	37	chr2	234545674	234545674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccctctgtggtcttcaCcaggggaatattttgccacc	8	15	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234545674	A	A	234545674	3	1	55	1	0	0	0	0	1	0	0	0	17071	507	18	3	508	3	UGT1A10	2	234545674	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	861091	234545674	8653699	192	61395											
SH3BP4	23677	broad.mit.edu	37	chr2	235951006	235951006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagcaccagttcgttttGtccaggccccaggatctcaa	11	12	1	0	rs148242042		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235951006	T	T	235951006	3	4	55	1	0	0	0	0	1	0	0	0	14359	1368	48	3	1599	3	SH3BP4	2	235951006	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1405332	235951006	7248367	193	61396											
AGAP1	116987	broad.mit.edu	37	chr2	236750805	236750805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccgctcctggtttcttaGttctggagcacagactccgt	9	14	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236750805	T	T	236750805	1	4	55	0	1	0	0	0	0	0	0	0	366	1044	36	3		3	AGAP1	2	236750805	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	799799	236750805	6448568	194	61397											
SRGAP3	9901	broad.mit.edu	37	chr3	9050015	9050015	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccagagaagccttctgCccatcagcccgaggagctgt	12	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9050015	A	A	9050015	1	1	55	0	1	0	0	0	0	0	0	0	15265	754	26	3		3	SRGAP3	3	9050015	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08		9050015	188972415	195	61398											
CAND2	23066	broad.mit.edu	37	chr3	12858058	12858058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattgcagccgaggccctgGtggtgctgcaggagctggtg	18	9	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12858058	T	T	12858058	3	4	55	1	0	0	0	0	1	0	0	0	2642	1261	44	3	1665	3	CAND2	3	12858058	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3808043	12858058	185164372	196	61399											
C3orf19	51244	broad.mit.edu	37	chr3	14703252	14703252	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttagctcagaggaacatcctCagacttgcgctgacattttg	9	10	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14703252	G	G	14703252	1	3	55	0	1	0	0	0	0	0	0	0	2234	841	29	4		4	C3orf19	3	14703252	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1845194	14703252	183319178	197	61400											
TRANK1	9881	broad.mit.edu	37	chr3	36897786	36897786	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtttccacttcaatagaatCttcctcttcctcgtcctctt	3	14	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36897786	A	A	36897786	3	1	55	1	0	0	0	0	1	0	0	0	16578	913	32	3	5530	3	TRANK1	3	36897786	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	22194534	36897786	161124644	198	61401											
SCN11A	11280	broad.mit.edu	37	chr3	38913739	38913739	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagtgctcgtagagtcCggaaggacttcaattccatt	10	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38913739	T	T	38913739	3	4	55	1	0	0	0	0	1	0	0	0	14026	652	23	4	1963	4	SCN11A	3	38913739	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2015953	38913739	159108691	199	61402											
FBXW12	285231	broad.mit.edu	37	chr3	48420863	48420863	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcacatatcttcctattGatatggtggggatgctttgg	10	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48420863	T	T	48420863	1	4	55	0	1	0	0	0	0	0	0	0	5822	1305	45	3		3	FBXW12	3	48420863	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9507124	48420863	149601567	200	61403											
COL7A1	1294	broad.mit.edu	37	chr3	48617273	48617273	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggggaatgaccagtgagaaGaatggctcaacaaggggaag	17	5	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48617273	C	C	48617273	1	2	55	0	1	0	0	0	0	0	0	0	3736	957	33	4		4	COL7A1	3	48617273	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	196410	48617273	149405157	201	61404											
USP4	7375	broad.mit.edu	37	chr3	49337975	49337975	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttcttcaagggcagtggCagcgttagatagcaaaatgg	12	7	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49337975	T	T	49337975	2	4	55	1	0	0	0	0	0	0	0	1	17198	697	25	4		4	USP4	3	49337975	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	720702	49337975	148684455	202	61405											
BSN	8927	broad.mit.edu	37	chr3	49662731	49662731	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacctcacgtcgacccccaGccagccaaacttcaacacct	6	19	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49662731	A	A	49662731	3	1	55	1	0	0	0	0	1	0	0	0	1539	971	34	4	554	4	BSN	3	49662731	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	324756	49662731	148359699	203	61406											
BSN	8927	broad.mit.edu	37	chr3	49694598	49694598	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctccccagctctgcctcaGacatgtcactgcaaacggag	9	15	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49694598	T	T	49694598	3	4	55	1	0	0	0	0	1	0	0	0	1539	942	33	3	7627	3	BSN	3	49694598	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	31867	49694598	148327832	204	61407											
TLR9	54106	broad.mit.edu	37	chr3	52257640	52257640	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcgccagtttgacgatgCggttgtaggacaacagcaga	14	9	0	2	rs147300053		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52257640	T	T	52257640	3	4	55	1	0	0	0	0	1	0	0	0	16081	768	27	4	2410	4	TLR9	3	52257640	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2563042	52257640	145764790	205	61408											
GNL3	26354	broad.mit.edu	37	chr3	52723250	52723250	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagggtaccctttgtcttCtgtgtacatgggtgaggtac	13	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52723250	T	T	52723250	1	4	55	0	1	0	0	0	0	0	0	0	6601	928	32	4		4	GNL3	3	52723250	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	465610	52723250	145299180	206	61409											
TMEM110	375346	broad.mit.edu	37	chr3	52896105	52896105	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtccctcatagccaagTtgtctcctgcccactctgct	8	16	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52896105	C	C	52896105	1	2	55	0	1	0	0	0	0	0	0	0	16150	1740	60	5		5	TMEM110	3	52896105	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	172855	52896105	145126325	207	61410											
WNT5A	7474	broad.mit.edu	37	chr3	55504070	55504070	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaccagaatcactgtactttCtataaataagcgggtcctgg	8	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55504070	G	G	55504070	1	3	55	0	1	0	0	0	0	0	0	0	17518	928	32	4		4	WNT5A	3	55504070	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2607965	55504070	142518360	208	61411											
FLNB	2317	broad.mit.edu	37	chr3	58095709	58095709	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacatgctgtttcttgtaagCtggtgctaataagctggtct	11	7	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58095709	G	G	58095709	1	3	55	0	1	0	0	0	0	0	0	0	5992	812	28	4		4	FLNB	3	58095709	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2591639	58095709	139926721	209	61412											
ACOX2	8309	broad.mit.edu	37	chr3	58516408	58516408	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagttctgggccaaggcttCccaggatgccctcgcttctc	10	15	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58516408	A	A	58516408	1	1	55	0	1	0	0	0	0	0	0	0	159	870	30	3		3	ACOX2	3	58516408	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	420699	58516408	139506022	210	61413											
C3orf14	57415	broad.mit.edu	37	chr3	62307739	62307739	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttaaaggtaagtttccAtgacttgaatatagagattt	7	4	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62307739	G	G	62307739	1	3	55	0	1	0	0	0	0	0	0	0	2230	232	8	5		5	C3orf14	3	62307739	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3791331	62307739	135714691	211	61414											
FAM19A1	407738	broad.mit.edu	37	chr3	68587942	68587942	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaatggtggtgtgagatgGagccttgcctagaaggagaa	17	4	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68587942	T	T	68587942	4	4	55	1	0	0	0	0	0	1	0	0	5578	1175	41	3	305	3	FAM19A1	3	68587942	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6280203	68587942	129434488	212	61415											
GBE1	2632	broad.mit.edu	37	chr3	81692233	81692233	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttcaccatcgcagtactaGatactttaaatatccaaaca	4	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81692233	C	C	81692233	1	2	55	0	1	0	0	0	0	0	0	0	6332	957	33	4		4	GBE1	3	81692233	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	13104291	81692233	116330197	213	61416											
CADM2	253559	broad.mit.edu	37	chr3	86115950	86115950	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaagatgcaggccaagattCtgagttttactaccaggctg	10	8	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86115950	T	T	86115950	1	4	55	0	1	0	0	0	0	0	0	0	2593	928	32	4		4	CADM2	3	86115950	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4423717	86115950	111906480	214	61417											
EPHA6	285220	broad.mit.edu	37	chr3	97185324	97185324	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtgggactttattgcctCaggtaactgaaaagtcaaag	10	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97185324	A	A	97185324	1	1	55	0	1	0	0	0	0	0	0	0	5213	838	29	3		3	EPHA6	3	97185324	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	11069374	97185324	100837106	215	61418											
ST3GAL6	10402	broad.mit.edu	37	chr3	98487365	98487365	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatattatggggaacgaaTgtctattggtaagtttcatt	10	4	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98487365	A	A	98487365	3	1	55	1	0	0	0	0	1	0	0	0	15337	1461	51	5	83	5	ST3GAL6	3	98487365	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1302041	98487365	99535065	216	61419											
ABI3BP	25890	broad.mit.edu	37	chr3	100471569	100471569	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagaaaaggccaagttgtAcaatgctgcaaaacattccc	7	9	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100471569	G	G	100471569	1	3	55	0	1	0	0	0	0	0	0	0	91	406	14	5		5	ABI3BP	3	100471569	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1984204	100471569	97550861	217	61420											
MYH15	22989	broad.mit.edu	37	chr3	108174488	108174488	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatggtcatgagagctgaAgaatgccttataattgagca	10	5	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108174488	G	G	108174488	1	3	55	0	1	0	0	0	0	0	0	0	10128	87	3	5		5	MYH15	3	108174488	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	7702919	108174488	89847942	218	61421											
DZIP3	9666	broad.mit.edu	37	chr3	108343296	108343296	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttttctttgtaggcacaCcagattaatattggttatta	6	5	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108343296	G	G	108343296	3	3	55	1	0	0	0	0	1	0	0	0	4905	506	18	4	399	4	DZIP3	3	108343296	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	168808	108343296	89679134	219	61422											
RETNLB	84666	broad.mit.edu	37	chr3	108475319	108475319	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaggggaggatacagggcAtcgtagtcgccattccctct	13	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108475319	C	C	108475319	1	2	55	0	1	0	0	0	0	0	0	0	13345	232	8	5		5	RETNLB	3	108475319	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	132023	108475319	89547111	220	61423											
BOC	91653	broad.mit.edu	37	chr3	112940759	112940759	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcccacagccatgttagcctCctgattgctgctcacactgg	8	15	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112940759	G	G	112940759	1	3	55	0	1	0	0	0	0	0	0	0	1487	870	30	4		4	BOC	3	112940759	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4465440	112940759	85081671	221	61424											
GRAMD1C	54762	broad.mit.edu	37	chr3	113619945	113619945	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgagctaggtttaaatgCtgaggagatggaaaacttgt	12	5	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113619945	G	G	113619945	3	3	55	1	0	0	0	0	1	0	0	0	6815	797	28	4	634	4	GRAMD1C	3	113619945	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	679186	113619945	84402485	222	61425											
KIAA1407	57577	broad.mit.edu	37	chr3	113737669	113737669	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttccccagcttaatcctaTgatcaagaatcagcttgtgc	6	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113737669	G	G	113737669	3	3	55	1	0	0	0	0	1	0	0	0	8299	1464	51	5	1831	5	KIAA1407	3	113737669	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	117724	113737669	84284761	223	61426											
IGSF11	152404	broad.mit.edu	37	chr3	118647597	118647597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaataaataaactggccaCtctatcctctcctagacaca	3	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118647597	A	A	118647597	1	1	55	0	1	0	0	0	0	0	0	0	7668	580	20	3		3	IGSF11	3	118647597	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4909928	118647597	79374833	224	61427											
ARHGAP31	57514	broad.mit.edu	37	chr3	119112158	119112158	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggcatctctagacaaggTgagaatcaagcttaccttgg	12	8	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119112158	G	G	119112158	1	3	55	0	1	0	0	0	0	0	0	0	882	1711	59	5		5	ARHGAP31	3	119112158	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	464561	119112158	78910272	225	61428											
NR1I2	8856	broad.mit.edu	37	chr3	119511310	119511310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagctgtgcaagctggaagcTgcagaggacatcacgtacca	13	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119511310	A	A	119511310	1	1	55	0	1	0	0	0	0	0	0	0	10715	1595	55	5		5	NR1I2	3	119511310	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	399152	119511310	78511120	226	61429											
RAB43	339122	broad.mit.edu	37	chr3	128814160	128814160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaactcaatggctcaaCcttgttggaaaaatggggaa	10	7	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128814160	T	T	128814160	1	4	55	0	1	0	0	0	0	0	0	0	13053	522	18	4		4	RAB43	3	128814160	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	9302850	128814160	69208270	227	61430											
IFT122	55764	broad.mit.edu	37	chr3	129175648	129175648	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcacctgtagtcccagctActcgggaggctgaggcagga	16	11	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129175648	G	G	129175648	1	3	55	0	1	0	0	0	0	0	0	0	7625	406	14	5		5	IFT122	3	129175648	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	361488	129175648	68846782	228	61431											
COL6A6	131873	broad.mit.edu	37	chr3	130284242	130284242	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaagcagctgttaacctcCgacgggagggtgtgaccatc	12	11	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130284242	T	T	130284242	4	4	55	1	0	0	0	0	0	1	0	0	3735	644	23	4	1076	4	COL6A6	3	130284242	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1108594	130284242	67738188	229	61432											
CPNE4	131034	broad.mit.edu	37	chr3	131348494	131348494	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatggggttttaccatgttGgccaggctggtctcgaactc	13	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131348494	C	C	131348494	1	2	55	0	1	0	0	0	0	0	0	0	3846	1363	47	4		4	CPNE4	3	131348494	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1064252	131348494	66673936	230	61433											
MRAS	22808	broad.mit.edu	37	chr3	138111868	138111868	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctattggttatgctatAtatgtatgtgtgtgtatact	8	4	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138111868	G	G	138111868	1	3	55	0	1	0	0	0	0	0	0	0	9849	464	16	5		5	MRAS	3	138111868	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	6763374	138111868	59910562	231	61434											
ATR	545	broad.mit.edu	37	chr3	142257451	142257451	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatgatccaggcagcgaaCaaagcagtcccaagctctat	9	12	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142257451	G	G	142257451	3	3	55	1	0	0	0	0	1	0	0	0	1208	478	17	4	4452	4	ATR	3	142257451	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4145583	142257451	55764979	232	61435											
ATR	545	broad.mit.edu	37	chr3	142281172	142281172	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagattcatacccagctgGcacaaatttaaggaaatact	7	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142281172	A	A	142281172	3	1	55	1	0	0	0	0	1	0	0	0	1208	1203	42	4	7038	4	ATR	3	142281172	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	23721	142281172	55741258	233	61436											
PLSCR4	57088	broad.mit.edu	37	chr3	145917613	145917613	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctgacctcttgtctggcaGaggggcaacagaagcaacag	12	11	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145917613	C	C	145917613	3	2	55	1	0	0	0	0	1	0	0	0	12207	942	33	4	394	4	PLSCR4	3	145917613	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3636441	145917613	52104817	234	61437											
ZIC1	7545	broad.mit.edu	37	chr3	147128838	147128839	+	Frame_Shift_Del	DEL	CG	-	-													cctggctgtggcaaggtcttCgcgcgctccgagaatttaaa							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147128839	-	-	147128838	7	5	55	1	0	1	0	1	0	0	0	0	17804	883	31	0	941	0	ZIC1	3	147128838	Frame_Shift_Del	DEL	CG	TCGA-17-Z023-01A-01W-0746-08	1211225	147128838	50893592	235	61438											
HPS3	84343	broad.mit.edu	37	chr3	148871238	148871238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgaagattgaagtgcatGtacctttatttcttgcttaa	7	5	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148871238	T	T	148871238	1	4	55	0	1	0	0	0	0	0	0	0	7407	1392	48	3		3	HPS3	3	148871238	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1742400	148871238	49151192	236	61439											
P2RY14	9934	broad.mit.edu	37	chr3	150930960	150930960	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttatatttgaattttaTtgaactaaattggatggcag	7	3	0	2	rs56155270	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150930960	A	A	150930960	1	1	55	0	1	0	0	0	0	0	0	0	11445	1508	52	5		5	P2RY14	3	150930960	3'UTR	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2059722	150930960	47091470	237	61440											
GPR149	344758	broad.mit.edu	37	chr3	154147167	154147167	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaccgacaggacgctcaTgagatcatccacagaccagg	11	13	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154147167	A	A	154147167	3	1	55	1	0	0	0	0	1	0	0	0	6719	1464	51	5	1973	5	GPR149	3	154147167	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3216207	154147167	43875263	238	61441											
PLCH1	23007	broad.mit.edu	37	chr3	155205894	155205894	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaatagacatgccggtAgcctgataaaaggaaagaga	10	7	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155205894	T	T	155205894	3	4	55	1	0	0	0	0	1	0	0	0	12132	420	15	5	2606	5	PLCH1	3	155205894	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1058727	155205894	42816536	239	61442											
VEPH1	79674	broad.mit.edu	37	chr3	157099227	157099227	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatcatccaggcatggtgGtcatgcctgtaatcccagca	9	11	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157099227	A	A	157099227	1	1	55	0	1	0	0	0	0	0	0	0	17281	1276	44	4		4	VEPH1	3	157099227	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1893333	157099227	40923203	240	61443											
MECOM	2122	broad.mit.edu	37	chr3	169211723	169211724	+	Intron	INS	-	AT	AT													gtgttcaacctgacagtaacINSgtggttaaattaatcaaagt					rs146685329	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	169211724	AT	AT	169211723	6	5	55	0	1	1	1	0	0	0	0	0	9515	551	19	0		0	MECOM	3	169211723	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	12112496	169211723	28810707	241	61444											
MECOM	2122	broad.mit.edu	37	chr3	169230243	169230243	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaactcaaatgcagtaagcGtaagaacaaatctcctccag	6	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169230243	A	A	169230243	1	1	55	0	1	0	0	0	0	0	0	0	9515	1160	40	4		4	MECOM	3	169230243	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	18520	169230243	28792187	242	61445											
MYNN	55892	broad.mit.edu	37	chr3	169496504	169496504	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtatatatgcagctctgtttCgaaagtttttctttgatcag	8	6	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169496504	T	T	169496504	1	4	55	0	1	0	0	0	0	0	0	0	10155	899	31	4		4	MYNN	3	169496504	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	266261	169496504	28525926	243	61446											
SKIL	6498	broad.mit.edu	37	chr3	170110049	170110049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttaaatcacatagttGgcagaactgaggcagagatt	10	7	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170110049	T	T	170110049	3	4	55	1	0	0	0	0	1	0	0	0	14471	1339	47	2	1921	2	SKIL	3	170110049	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	613545	170110049	27912381	244	61447											
SLC7A14	57709	broad.mit.edu	37	chr3	170185069	170185069	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagaaggggtcatccacgTcgtagcgttggtacgtgctt	14	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170185069	A	A	170185069	3	1	55	1	0	0	0	0	1	0	0	0	14810	1667	58	5	229	5	SLC7A14	3	170185069	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	75020	170185069	27837361	245	61448											
TNIK	23043	broad.mit.edu	37	chr3	171124468	171124468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctcaggtgatcttccCacctgggcctcccaagttgc	10	16	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171124468	A	A	171124468	1	1	55	0	1	0	0	0	0	0	0	0	16436	609	21	2		2	TNIK	3	171124468	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	939399	171124468	26897962	246	61449											
NAALADL2	254827	broad.mit.edu	37	chr3	175184864	175184864	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataatcacagcgtttatccgTgccttgatgtcaaaagttaa	7	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175184864	G	G	175184864	2	3	55	1	0	0	0	0	0	0	0	1	10224	1683	59	5		5	NAALADL2	3	175184864	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4060396	175184864	22837566	247	61450											
TBL1XR1	79718	broad.mit.edu	37	chr3	176755885	176755886	+	Splice_Site	DNP	CC	AA	AA													tctccctactaagcaaattaCctttaaagtcatgtcgtcag							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	176755886	AA	AA	176755885	5	1	55	1	0	0	0	0	0	0	1	0	15762	521	18	3	441	3	TBL1XR1	3	176755885	Splice_Site	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	1571021	176755885	21266545	248	61451											
TBL1XR1	79718	broad.mit.edu	37	chr3	176767882	176767882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgtagagccactggtgCtgttctcactaagattccat	9	10	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176767882	A	A	176767882	3	1	55	1	0	0	0	0	1	0	0	0	15762	797	28	3	979	3	TBL1XR1	3	176767882	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	11997	176767882	21254548	249	61452											
KCNMB2	10242	broad.mit.edu	37	chr3	178390584	178390584	+	Intron	DEL	C	-	-													tgagacttccaaaactctggCcttttcatttccaaaaccgc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	178390584	-	-	178390584	6	5	55	0	1	1	0	1	0	0	0	0	8145	754	26	0		0	KCNMB2	3	178390584	Intron	DEL	C	TCGA-17-Z023-01A-01W-0746-08	1622702	178390584	19631846	250	61453											
USP13	8975	broad.mit.edu	37	chr3	179470018	179470018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgatatgctttttgaactGtattcacaattcttattgcc	6	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179470018	T	T	179470018	1	4	55	0	1	0	0	0	0	0	0	0	17170	1392	48	3		3	USP13	3	179470018	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1079434	179470018	18552412	251	61454											
PEX5L	51555	broad.mit.edu	37	chr3	179576977	179576977	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catacacatagtgttataatAttagaatcacatgttattat	4	5	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179576977	T	T	179576977	1	4	55	0	1	0	0	0	0	0	0	0	11844	464	16	5		5	PEX5L	3	179576977	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	106959	179576977	18445453	252	61455											
MAP3K13	9175	broad.mit.edu	37	chr3	185135543	185135543	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgtgattcctggcctggcGaagaatggtgttccggcgca	14	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185135543	T	T	185135543	1	4	55	0	1	0	0	0	0	0	0	0	9339	1073	37	3		3	MAP3K13	3	185135543	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5558566	185135543	12886887	253	61456											
HRG	3273	broad.mit.edu	37	chr3	186394878	186394878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccgcctcatttgggacatCccttccactggggtgggcat	11	13	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186394878	A	A	186394878	3	1	55	1	0	0	0	0	1	0	0	0	7421	855	30	3	810	3	HRG	3	186394878	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1259335	186394878	11627552	254	61457											
MASP1	5648	broad.mit.edu	37	chr3	186951577	186951577	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggactagagatgccctaGccagtcaccaggcccagcgt	12	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186951577	A	A	186951577	1	1	55	0	1	0	0	0	0	0	0	0	9414	986	34	4		4	MASP1	3	186951577	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	556699	186951577	11070853	255	61458											
LRRC33	375387	broad.mit.edu	37	chr3	196387777	196387777	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggcgtcccccctggcctCttcgccaatgctaggaacat	10	16	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196387777	G	G	196387777	2	3	55	1	0	0	0	0	0	0	0	1	9075	900	32	4		4	LRRC33	3	196387777	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	9436200	196387777	1634653	256	61459											
DLG1	1739	broad.mit.edu	37	chr3	196783954	196783955	+	Intron	INS	-	T	T													ttttagttactgactctttgINStttttttttagagacacggc					rs150656429	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196783955	T	T	196783954	6	5	55	0	1	1	1	0	0	0	0	0	4594	1392	48	0		0	DLG1	3	196783954	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	396177	196783954	1238476	257	61460											
BDH1	622	broad.mit.edu	37	chr3	197241142	197241142	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcccactcacctttggcCcttcggatgagggggagaaa	11	12	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197241142	T	T	197241142	2	4	55	1	0	0	0	0	0	0	0	1	1395	622	22	4		4	BDH1	3	197241142	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	457188	197241142	781288	258	61461											
LMLN	89782	broad.mit.edu	37	chr3	197762926	197762926	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccacttggtgagtgctctCtatggttggaataaagaggg	14	6	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197762926	T	T	197762926	1	4	55	0	1	0	0	0	0	0	0	0	8921	928	32	4		4	LMLN	3	197762926	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	521784	197762926	259504	259	61462											
SORCS2	57537	broad.mit.edu	37	chr4	7665431	7665431	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgggtcacccaaggctgGgggcaggaggaggaggaaaa	19	8	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7665431	A	A	7665431	1	1	55	0	1	0	0	0	0	0	0	0	15045	1247	43	4		4	SORCS2	4	7665431	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08		7665431	183488845	260	61463											
NCAPG	64151	broad.mit.edu	37	chr4	17816939	17816939	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagagctatgtccattgctCagagagtaatgctccttcaa	9	9	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17816939	G	G	17816939	3	3	55	1	0	0	0	0	1	0	0	0	10302	827	29	4	751	4	NCAPG	4	17816939	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	10151508	17816939	173337337	261	61464											
SLC34A2	10568	broad.mit.edu	37	chr4	25678392	25678392	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacgccccagattgtcagGgatggggggatggtccttga	18	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25678392	A	A	25678392	1	1	55	0	1	0	0	0	0	0	0	0	14682	1247	43	4		4	SLC34A2	4	25678392	3'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	7861453	25678392	165475884	262	61465											
RBPJ	3516	broad.mit.edu	37	chr4	26431952	26431952	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcccttttttaaaaaaaAcaaatgaaagttgaatgaga	6	4	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26431952	G	G	26431952	1	3	55	0	1	0	0	0	0	0	0	0	13269	58	2	5		5	RBPJ	4	26431952	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	753560	26431952	164722324	263	61466											
GRXCR1	389207	broad.mit.edu	37	chr4	42895485	42895485	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagaatggccacatagagTcagaaggtgatgagaatgag	14	5	1	6			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42895485	A	A	42895485	3	1	55	1	0	0	0	0	1	0	0	0	6878	1667	58	5	204	5	GRXCR1	4	42895485	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	16463533	42895485	148258791	264	61467											
KCTD8	386617	broad.mit.edu	37	chr4	44177124	44177124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggatgggttgtcctgggGagtgcttgcctctgaatggc	16	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44177124	T	T	44177124	3	4	55	1	0	0	0	0	1	0	0	0	8185	1174	41	3	320	3	KCTD8	4	44177124	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1281639	44177124	146977152	265	61468											
GNPDA2	132789	broad.mit.edu	37	chr4	44705105	44705105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctccagtctccttcagtttCcatctttcatactgaatagt	5	12	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44705105	A	A	44705105	3	1	55	1	0	0	0	0	1	0	0	0	6607	855	30	3	10	3	GNPDA2	4	44705105	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	527981	44705105	146449171	266	61469											
GABRG1	2565	broad.mit.edu	37	chr4	46053535	46053535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatattccatcaaggctGcaaaaacaaaaatgaaacaa	4	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46053535	T	T	46053535	3	4	55	1	0	0	0	0	1	0	0	0	6231	1319	46	3	368	3	GABRG1	4	46053535	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1348430	46053535	145100741	267	61470											
COX7B2	170712	broad.mit.edu	37	chr4	46737019	46737040	+	Frame_Shift_Del	DEL	TCTATTCCAATCTGAGTGGCTG	-	-													caacaggggataggttccatTctattccaatctgagtggct					rs140822119	byFrequency	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46737040	-	-	46737019	7	5	55	1	0	1	0	1	0	0	0	0	3815	1783	62	0	58	0	COX7B2	4	46737019	Frame_Shift_Del	DEL	TCTATTCCAATCTGAGTGGCTG	TCGA-17-Z023-01A-01W-0746-08	683484	46737019	144417257	268	61471											
GABRA4	2557	broad.mit.edu	37	chr4	46967293	46967293	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacaccttaccatcatttgTattaaaaagcaccgccacca	3	13	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46967293	A	A	46967293	1	1	55	0	1	0	0	0	0	0	0	0	6223	1653	57	5		5	GABRA4	4	46967293	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	230274	46967293	144186983	269	61472											
PDGFRA	5156	broad.mit.edu	37	chr4	55127361	55127361	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccttttctctgagatgctTtggggagagtgaagtgagct	13	6	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55127361	G	G	55127361	3	3	55	1	0	0	0	0	1	0	0	0	11755	1841	64	5	155	5	PDGFRA	4	55127361	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	8160068	55127361	136026915	270	61473											
KDR	3791	broad.mit.edu	37	chr4	55956349	55956349	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcccacatcagaaagccaaCtgattaacaaggactgggtt	8	10	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55956349	G	G	55956349	1	3	55	0	1	0	0	0	0	0	0	0	8209	580	20	4		4	KDR	4	55956349	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	828988	55956349	135197927	271	61474											
AASDH	132949	broad.mit.edu	37	chr4	57220929	57220929	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattagtatctctgacttcAactactgttccaagaagtgg	7	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57220929	T	T	57220929	2	4	55	1	0	0	0	0	0	0	0	1	22	117	5	5		5	AASDH	4	57220929	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1264580	57220929	133933347	272	61475											
YTHDC1	91746	broad.mit.edu	37	chr4	69198022	69198022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaacccagctaaacttttAaaacgcaacaatcacccatt	2	14	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69198022	G	G	69198022	1	3	55	0	1	0	0	0	0	0	0	0	17623	377	13	5		5	YTHDC1	4	69198022	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	11977093	69198022	121956254	273	61476											
CSN3	1448	broad.mit.edu	37	chr4	71114958	71114958	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccactgtggtacgtcgcCcaaacctgcatccatcattt	6	16	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71114958	G	G	71114958	3	3	55	1	0	0	0	0	1	0	0	0	3983	623	22	4	341	4	CSN3	4	71114958	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1916936	71114958	120039318	274	61477											
DCK	1633	broad.mit.edu	37	chr4	71889174	71889174	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttccacggcactatgtGccactggatttaggagaatg	11	9	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71889174	A	A	71889174	1	1	55	0	1	0	0	0	0	0	0	0	4323	1334	46	4		4	DCK	4	71889174	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	774216	71889174	119265102	275	61478											
AFP	174	broad.mit.edu	37	chr4	74316541	74316541	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatagcctcataattcccCtctagggaagacggtaaaaa	8	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74316541	G	G	74316541	1	3	55	0	1	0	0	0	0	0	0	0	363	696	24	4		4	AFP	4	74316541	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2427367	74316541	116837735	276	61479											
G3BP2	9908	broad.mit.edu	37	chr4	76580892	76580892	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacaataattctaggaaCagaaaccaccttgctgacat	5	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76580892	G	G	76580892	1	3	55	0	1	0	0	0	0	0	0	0	6202	493	17	4		4	G3BP2	4	76580892	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2264351	76580892	114573384	277	61480											
ART3	419	broad.mit.edu	37	chr4	77025166	77025166	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgagcccaagaatgagttGagcaggattcccaggcattt	11	10	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77025166	C	C	77025166	1	2	55	0	1	0	0	0	0	0	0	0	1002	1305	45	4		4	ART3	4	77025166	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	444274	77025166	114129110	278	61481											
SCARB2	950	broad.mit.edu	37	chr4	77089567	77089567	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacttacacaaagtcatcTaattttttgacataaatgtt	3	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77089567	C	C	77089567	2	2	55	1	0	0	0	0	0	0	0	1	13994	1519	53	5		5	SCARB2	4	77089567	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	64401	77089567	114064709	279	61482											
MRPL1	65008	broad.mit.edu	37	chr4	78806609	78806609	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctcactgcaacctccgcCtcccaggttcaagcgattct	8	17	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78806609	T	T	78806609	1	4	55	0	1	0	0	0	0	0	0	0	9868	696	24	4		4	MRPL1	4	78806609	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1717042	78806609	112347667	280	61483											
PRDM8	56978	broad.mit.edu	37	chr4	81121208	81121208	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagtaacataactcacttTcttgtgctgtgtgtctatct	7	9	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81121208	C	C	81121208	1	2	55	0	1	0	0	0	0	0	0	0	12568	1798	62	5		5	PRDM8	4	81121208	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2314599	81121208	110033068	281	61484											
WDFY3	23001	broad.mit.edu	37	chr4	85771070	85771070	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacctgtggatttgtttgAtgctctccttcgaatttctg	8	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85771070	G	G	85771070	3	3	55	1	0	0	0	0	1	0	0	0	17397	333	12	5	10590	5	WDFY3	4	85771070	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4649862	85771070	105383206	282	61485											
AFF1	4299	broad.mit.edu	37	chr4	87957988	87957988	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctctctcccctcccccAtcccccctttttttgagacg	3	20	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87957988	C	C	87957988	1	2	55	0	1	0	0	0	0	0	0	0	356	232	8	5		5	AFF1	4	87957988	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2186918	87957988	103196288	283	61486											
MMRN1	22915	broad.mit.edu	37	chr4	90857477	90857477	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattatatttcagttaaaaaAggcagtgtagttacaaatga	7	3	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90857477	G	G	90857477	2	3	55	1	0	0	0	0	0	0	0	1	9764	69	3	5		5	MMRN1	4	90857477	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2899489	90857477	100296799	284	61487											
DKK2	27123	broad.mit.edu	37	chr4	108124822	108124822	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggactttttcaaatgatgcAggactcacaagggaaaagca	10	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108124822	T	T	108124822	1	4	55	0	1	0	0	0	0	0	0	0	4585	203	7	5		5	DKK2	4	108124822	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	17267345	108124822	83029454	285	61488											
SEC24B	10427	broad.mit.edu	37	chr4	110427451	110427451	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatttatttatgttttattGttcttttattttgttttgaa	4	1	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110427451	C	C	110427451	1	2	55	0	1	0	0	0	0	0	0	0	14108	1392	48	4		4	SEC24B	4	110427451	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2302629	110427451	80726825	286	61489											
PLA2G12A	81579	broad.mit.edu	37	chr4	110639891	110639891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtggggagggtttataaCcataacgtgggaaaggctta	15	5	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110639891	A	A	110639891	3	1	55	1	0	0	0	0	1	0	0	0	12085	507	18	3	348	3	PLA2G12A	4	110639891	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	212440	110639891	80514385	287	61490											
CFI	3426	broad.mit.edu	37	chr4	110687940	110687940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtatatttttttgctaagCactttttctccaccagatcc	5	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110687940	A	A	110687940	3	1	55	1	0	0	0	0	1	0	0	0	3319	710	25	3	1701	3	CFI	4	110687940	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	48049	110687940	80466336	288	61491											
EGF	1950	broad.mit.edu	37	chr4	110864392	110864392	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtattaataacaatttTaaaatttgattttgcagaga	7	2	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110864392	A	A	110864392	1	1	55	0	1	0	0	0	0	0	0	0	5002	1769	61	5		5	EGF	4	110864392	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	176452	110864392	80289884	289	61492											
PITX2	5308	broad.mit.edu	37	chr4	111539531	111539532	+	Missense_Mutation	DNP	GG	TC	TC													ggctgttgagactggagcccGggacgcctgtcactgctgag							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	111539532	TC	TC	111539531	3	4	55	1	0	0	0	0	1	0	0	0	12050	1116	39	1	253	1	PITX2	4	111539531	Missense_Mutation	DNP	GG	TCGA-17-Z023-01A-01W-0746-08	675139	111539531	79614745	290	61493											
ANK2	287	broad.mit.edu	37	chr4	114179250	114179250	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctgcaagaaaaaccgcatCaaagtcatggaactgctggt	10	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114179250	T	T	114179250	2	4	55	1	0	0	0	0	0	0	0	1	621	816	29	4		4	ANK2	4	114179250	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2639719	114179250	76975026	291	61494											
NDST3	9348	broad.mit.edu	37	chr4	119115731	119115731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttgtgccatctaacagcCagccagtgtagtggacaaag	11	9	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119115731	T	T	119115731	1	4	55	0	1	0	0	0	0	0	0	0	10352	609	21	4		4	NDST3	4	119115731	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4936481	119115731	72038545	292	61495											
PRDM5	11107	broad.mit.edu	37	chr4	121619506	121619506	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctttagtttctataatgaTctactctccttgttttcctt	3	10	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121619506	A	A	121619506	1	1	55	0	1	0	0	0	0	0	0	0	12566	1450	50	5		5	PRDM5	4	121619506	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2503775	121619506	69534770	293	61496											
PRDM5	11107	broad.mit.edu	37	chr4	121814176	121814176	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccatgactgaagcctctaTtgaggctacagtgccagtgg	11	12	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121814176	C	C	121814176	1	2	55	0	1	0	0	0	0	0	0	0	12566	1508	52	5		5	PRDM5	4	121814176	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	194670	121814176	69340100	294	61497											
TRPC3	7222	broad.mit.edu	37	chr4	122828338	122828338	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcactaactgtttttgaTggattattttctgtgcttaa	7	6	1	1	rs140204067	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122828338	C	C	122828338	1	2	55	0	1	0	0	0	0	0	0	0	16704	1479	51	5		5	TRPC3	4	122828338	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1014162	122828338	68325938	295	61498											
MFSD8	256471	broad.mit.edu	37	chr4	128861088	128861088	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgttgtatacatgtttatCtgcagtttaatcacatccca	7	8	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128861088	A	A	128861088	3	1	55	1	0	0	0	0	1	0	0	0	9631	912	32	3	966	3	MFSD8	4	128861088	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	6032750	128861088	62293188	296	61499											
SCOC	60592	broad.mit.edu	37	chr4	141206715	141206715	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctagggcattttgtaagcatCtctagattgtaacttttgtc	8	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141206715	A	A	141206715	1	1	55	0	1	0	0	0	0	0	0	0	14046	928	32	3		3	SCOC	4	141206715	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	12345627	141206715	49947561	297	61500											
ZNF827	152485	broad.mit.edu	37	chr4	146696992	146696992	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcagaggtgacggcgCtgacaatgtcctcggtgtct	13	11	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146696992	G	G	146696992	3	3	55	1	0	0	0	0	1	0	0	0	18309	797	28	4	607	4	ZNF827	4	146696992	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5490277	146696992	44457284	298	61501											
ARHGAP10	79658	broad.mit.edu	37	chr4	148894065	148894065	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggcatgtgccaccatgcCtggctaattttgtatttttt	8	9	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148894065	T	T	148894065	1	4	55	0	1	0	0	0	0	0	0	0	864	696	24	4		4	ARHGAP10	4	148894065	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2197073	148894065	42260211	299	61502											
TRIM2	23321	broad.mit.edu	37	chr4	154237007	154237007	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttccaatgatggccagttCaaaagtcgttttggcatacg	9	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154237007	G	G	154237007	3	3	55	1	0	0	0	0	1	0	0	0	16618	825	29	4	1668	4	TRIM2	4	154237007	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5342942	154237007	36917269	300	61503											
RBM46	166863	broad.mit.edu	37	chr4	155717947	155717947	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaatggatgcagtaaaGttcgaactggtattcagaat	10	5	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155717947	C	C	155717947	3	2	55	1	0	0	0	0	1	0	0	0	13248	1029	36	4	45	4	RBM46	4	155717947	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1480940	155717947	35436329	301	61504											
FSTL5	56884	broad.mit.edu	37	chr4	162380478	162380478	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgctcactgcctacaaTaaagaagaattgaaaaaaat	6	7	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162380478	A	A	162380478	1	1	55	0	1	0	0	0	0	0	0	0	6140	1421	49	5		5	FSTL5	4	162380478	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	6662531	162380478	28773798	302	61505											
TKTL2	84076	broad.mit.edu	37	chr4	164393215	164393215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccactgtgataactcggcCgcctgtggcttttgcactgg	11	13	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164393215	A	A	164393215	3	1	55	1	0	0	0	0	1	0	0	0	16059	652	23	1	212	1	TKTL2	4	164393215	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2012737	164393215	26761061	303	61506											
GPM6A	2823	broad.mit.edu	37	chr4	176883281	176883281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcaccatccggacccaGtgacaatgttacaggacatc	9	13	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176883281	T	T	176883281	1	4	55	0	1	0	0	0	0	0	0	0	6680	1044	36	3		3	GPM6A	4	176883281	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	12490066	176883281	14270995	304	61507											
WDR17	116966	broad.mit.edu	37	chr4	177071009	177071009	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggcctcttgctcccgtgActctacagtgagactctggt	10	12	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177071009	T	T	177071009	3	4	55	1	0	0	0	0	1	0	0	0	17404	275	10	5	2075	5	WDR17	4	177071009	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	187728	177071009	14083267	305	61508											
ACSL1	2180	broad.mit.edu	37	chr4	185683736	185683736	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtttttccagagaaaactGgtgtgtgcatgtgtgtacgt	14	5	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185683736	A	A	185683736	1	1	55	0	1	0	0	0	0	0	0	0	177	1363	47	4		4	ACSL1	4	185683736	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8612727	185683736	5470540	306	61509											
TRIML2	205860	broad.mit.edu	37	chr4	189026491	189026491	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcatcttctgtgatgttgTgctgtaactgagggctgagc	14	7	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189026491	C	C	189026491	1	2	55	0	1	0	0	0	0	0	0	0	16676	1711	59	5		5	TRIML2	4	189026491	5'Flank	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3342755	189026491	2127785	307	61510											
LPCAT1	79888	broad.mit.edu	37	chr5	1501647	1501647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcgacaagtgcgaggggCcaggccagcagcatcatggc	16	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1501647	A	A	1501647	3	1	55	1	0	0	0	0	1	0	0	0	8997	740	26	3	1449	3	LPCAT1	5	1501647	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08		1501647	179413613	308	61511											
SEMA5A	9037	broad.mit.edu	37	chr5	9052083	9052083	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggatgcactggcgggcgCggacttggacgccagaggct	19	10	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9052083	T	T	9052083	3	4	55	1	0	0	0	0	1	0	0	0	14150	768	27	4	493	4	SEMA5A	5	9052083	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7550436	9052083	171863177	309	61512											
CTNND2	1501	broad.mit.edu	37	chr5	11346578	11346578	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgctgtatggagactcaaCagagggacaatactgcagct	11	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11346578	T	T	11346578	3	4	55	1	0	0	0	0	1	0	0	0	4054	478	17	4	2199	4	CTNND2	5	11346578	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2294495	11346578	169568682	310	61513											
DNAH5	1767	broad.mit.edu	37	chr5	13729635	13729635	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatccattttgatggtttTggaggacaagctttaaggtc	12	5	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13729635	C	C	13729635	2	2	55	1	0	0	0	0	0	0	0	1	4644	1799	63	5		5	DNAH5	5	13729635	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2383057	13729635	167185625	311	61514											
CDH18	1016	broad.mit.edu	37	chr5	19612753	19612753	+	Intron	SNP	A	T	T													aacagtatgagctatataatAagcaagtatcaacaaacata							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19612753	T	T	19612753	1	4	55	0	1	0	0	0	0	0	0	0	3133	377	13	5		5	CDH18	5	19612753	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	5883118	19612753	161302507	312	61515	289	2									
CDH18	1016	broad.mit.edu	37	chr5	19612755	19612755	+	Intron	SNP	G	A	A													cagtatgagctatataataaGcaagtatcaacaaacataca							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19612755	A	A	19612755	1	1	55	0	1	0	0	0	0	0	0	0	3133	986	34	4		4	CDH18	5	19612755	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2	19612755	161302505	313	61516	289	2									
CDH12	1010	broad.mit.edu	37	chr5	21854915	21854915	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcacctggaaaataagacaAtatcactctagcatttttgt	6	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21854915	T	T	21854915	1	4	55	0	1	0	0	0	0	0	0	0	3128	116	4	5		5	CDH12	5	21854915	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2242160	21854915	159060345	314	61517											
CDH10	1008	broad.mit.edu	37	chr5	24487732	24487732	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtggagacagcatgggtaGagttactttctcttgtttga	12	5	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24487732	T	T	24487732	1	4	55	0	1	0	0	0	0	0	0	0	3126	957	33	3		3	CDH10	5	24487732	3'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2632817	24487732	156427528	315	61518											
CDH6	1004	broad.mit.edu	37	chr5	31299654	31299654	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagccaaggatatgggcGgccagatgggaggattatct	14	7	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31299654	C	C	31299654	3	2	55	1	0	0	0	0	1	0	0	0	3144	1116	39	4	741	4	CDH6	5	31299654	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6811922	31299654	149615606	316	61519											
NPR3	4883	broad.mit.edu	37	chr5	32774829	32774829	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcaggttaacatgtttgttGaaggattccacgatgccatc	9	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32774829	C	C	32774829	3	2	55	1	0	0	0	0	1	0	0	0	10691	1291	45	4	1089	4	NPR3	5	32774829	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1475175	32774829	148140431	317	61520											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576362	33576362	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtctttcctgagggttctgGctggtggtctcctcccagag	13	12	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33576362	A	A	33576362	3	1	55	1	0	0	0	0	1	0	0	0	257	1203	42	4	1039	4	ADAMTS12	5	33576362	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	801533	33576362	147338898	318	61521											
NIPBL	25836	broad.mit.edu	37	chr5	37052410	37052410	+	Intron	DEL	A	-	-													gaatgtaatgctctaagtatAtttttaatttgtgtctttta							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37052410	-	-	37052410	6	5	55	0	1	1	0	1	0	0	0	0	10523	464	16	0		0	NIPBL	5	37052410	Intron	DEL	A	TCGA-17-Z023-01A-01W-0746-08	3476048	37052410	143862850	319	61522											
C6	729	broad.mit.edu	37	chr5	41161794	41161794	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaataatttttactcttaCctcaaagtcaatcacagcag	5	9	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41161794	T	T	41161794	5	4	55	1	0	0	0	0	0	0	1	0	2338	521	18	4	1381	4	C6	5	41161794	Splice_Site	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4109384	41161794	139753466	320	61523											
C6	729	broad.mit.edu	37	chr5	41176655	41176655	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagccagaggtgaagtaatGagtcccaaagtcatcgaata	12	7	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41176655	T	T	41176655	3	4	55	1	0	0	0	0	1	0	0	0	2338	1290	45	3	1758	3	C6	5	41176655	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	14861	41176655	139738605	321	61524											
HCN1	348980	broad.mit.edu	37	chr5	45645509	45645509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcttgatcactttgggGtccaggatgatttcagaact	9	8	4	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45645509	T	T	45645509	3	4	55	1	0	0	0	0	1	0	0	0	7062	1252	44	3	2073	3	HCN1	5	45645509	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	4468854	45645509	135269751	322	61525											
ITGA1	3672	broad.mit.edu	37	chr5	52177949	52177949	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgaaagtttaatatgacAatatttaaagccattttgtt	5	3	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52177949	G	G	52177949	1	3	55	0	1	0	0	0	0	0	0	0	7942	145	5	5		5	ITGA1	5	52177949	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	6532440	52177949	128737311	323	61526											
DEPDC1B	55789	broad.mit.edu	37	chr5	59934781	59934781	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacctctaagtattattctCtgtgaatatgtgtggcgtgt	9	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59934781	A	A	59934781	1	1	55	0	1	0	0	0	0	0	0	0	4480	928	32	3		3	DEPDC1B	5	59934781	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7756832	59934781	120980479	324	61527											
DEPDC1B	55789	broad.mit.edu	37	chr5	59983115	59983115	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttttaagattactacatCtcaaataattaaagcaaaga	3	5	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59983115	T	T	59983115	1	4	55	0	1	0	0	0	0	0	0	0	4480	928	32	4		4	DEPDC1B	5	59983115	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	48334	59983115	120932145	325	61528											
HTR1A	3350	broad.mit.edu	37	chr5	63256808	63256808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttcttgggctgcggggCgggagatgctccatggcggg	18	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63256808	A	A	63256808	3	1	55	1	0	0	0	0	1	0	0	0	7506	768	27	3	532	3	HTR1A	5	63256808	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3273693	63256808	117658452	326	61529											
HTR1A	3350	broad.mit.edu	37	chr5	63257056	63257056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggatagagatgaggaagCcaataagccaagtgagcgag	16	6	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63257056	A	A	63257056	3	1	55	1	0	0	0	0	1	0	0	0	7506	739	26	3	780	3	HTR1A	5	63257056	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	248	63257056	117658204	327	61530											
NLN	57486	broad.mit.edu	37	chr5	65088520	65088520	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagtaaacctgccaattaGtttttttagaaaacttcttg	5	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65088520	A	A	65088520	1	1	55	0	1	0	0	0	0	0	0	0	10562	1044	36	4		4	NLN	5	65088520	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1831464	65088520	115826740	328	61531											
TAF9	6880	broad.mit.edu	37	chr5	68661018	68661018	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactgtaaacctttgacctgTgagggacatgggagtcccta	11	9	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68661018	A	A	68661018	3	1	55	1	0	0	0	0	1	0	0	0	15654	1696	59	5	661	5	TAF9	5	68661018	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3572498	68661018	112254242	329	61532											
GTF2H2C	728340	broad.mit.edu	37	chr5	68863489	68863489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggtttcacaaacatcaGttggacatgttctttatgat	7	7	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68863489	T	T	68863489	1	4	55	0	1	0	0	0	0	0	0	0	6927	1044	36	3		3	GTF2H2C	5	68863489	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	202471	68863489	112051771	330	61533											
HEXB	3074	broad.mit.edu	37	chr5	74014818	74014818	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtgaagcagttggtccaAgtgttgtgggttactgtgaa	14	4	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74014818	C	C	74014818	1	2	55	0	1	0	0	0	0	0	0	0	7141	87	3	5		5	HEXB	5	74014818	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	5151329	74014818	106900442	331	61534											
HMGCR	3156	broad.mit.edu	37	chr5	74646642	74646642	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggttcttgttcatgctcAcagtcgctggatagctgatc	10	10	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74646642	G	G	74646642	3	3	55	1	0	0	0	0	1	0	0	0	7298	159	6	5	839	5	HMGCR	5	74646642	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	631824	74646642	106268618	332	61535											
PDE8B	8622	broad.mit.edu	37	chr5	76708954	76708954	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccattggtttatctgggCttaaaggtcttctctcggtt	11	8	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76708954	A	A	76708954	2	1	55	1	0	0	0	0	0	0	0	1	11748	784	28	3		3	PDE8B	5	76708954	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2062312	76708954	104206306	333	61536											
MSH3	4437	broad.mit.edu	37	chr5	79952087	79952087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagttcacccatagggttTtccagagctaaaagtagagg	10	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79952087	C	C	79952087	1	2	55	0	1	0	0	0	0	0	0	0	9965	1856	64	5		5	MSH3	5	79952087	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3243133	79952087	100963173	334	61537											
RASGRF2	5924	broad.mit.edu	37	chr5	80376335	80376335	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgacacctggtgctgggacCcactctttgccattcctgcc	10	15	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80376335	G	G	80376335	1	3	55	0	1	0	0	0	0	0	0	0	13181	638	22	4		4	RASGRF2	5	80376335	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	424248	80376335	100538925	335	61538											
ZCCHC9	84240	broad.mit.edu	37	chr5	80604472	80604472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgggatatgttacagGtgtgggtccacagagcacga	15	8	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80604472	T	T	80604472	3	4	55	1	0	0	0	0	1	0	0	0	17721	1252	44	3	483	3	ZCCHC9	5	80604472	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	228137	80604472	100310788	336	61539											
VCAN	1462	broad.mit.edu	37	chr5	82816104	82816104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattgtttccttattctgGtgataaaatattagtagagg	9	3	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82816104	T	T	82816104	3	4	55	1	0	0	0	0	1	0	0	0	17265	1261	44	3	2001	3	VCAN	5	82816104	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2211632	82816104	98099156	337	61540											
GPR98	84059	broad.mit.edu	37	chr5	90398021	90398021	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagctcaaaaattctttTttttttatttctagaaattc	3	6	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90398021	C	C	90398021	1	2	55	0	1	0	0	0	0	0	0	0	6787	1856	64	5		5	GPR98	5	90398021	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	7581917	90398021	90517239	338	61541											
ARSK	153642	broad.mit.edu	37	chr5	94890989	94890989	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccgctaccggcgatgctaCtgctgtgggtgtcggtggtc	15	11	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94890989	T	T	94890989	2	4	55	1	0	0	0	0	0	0	0	1	1000	564	20	4		4	ARSK	5	94890989	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4492968	94890989	86024271	339	61542											
SLC25A46	91137	broad.mit.edu	37	chr5	110083988	110083988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttttagcatttcttcaGtattagtttcatgtggtgat	7	6	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110083988	T	T	110083988	1	4	55	0	1	0	0	0	0	0	0	0	14625	1044	36	3		3	SLC25A46	5	110083988	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	15192999	110083988	70831272	340	61543											
KCNN2	3781	broad.mit.edu	37	chr5	113822632	113822632	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtatttggagtcatggttActaaatgaagctacagctca	10	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113822632	G	G	113822632	1	3	55	0	1	0	0	0	0	0	0	0	8149	406	14	5		5	KCNN2	5	113822632	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3738644	113822632	67092628	341	61544											
SNCAIP	9627	broad.mit.edu	37	chr5	121748190	121748190	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgagaccacctctctcctCatttttctcctaacactctg	4	15	4	1	rs116697113	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121748190	A	A	121748190	1	1	55	0	1	0	0	0	0	0	0	0	14955	841	29	3		3	SNCAIP	5	121748190	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7925558	121748190	59167070	342	61545											
SNX2	6643	broad.mit.edu	37	chr5	122161790	122161791	+	Missense_Mutation	DNP	GC	TG	TG													gctggcagaaatgggaagatGctcaaattactttgctcaaa							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	122161791	TG	TG	122161790	3	4	55	1	0	0	0	0	1	0	0	0	15005	1319	46	3	1304	3	SNX2	5	122161790	Missense_Mutation	DNP	GC	TCGA-17-Z023-01A-01W-0746-08	413600	122161790	58753470	343	61546											
PRRC1	133619	broad.mit.edu	37	chr5	126887355	126887355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagctagttccaatgataTttttaaatgtattataagta	5	3	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126887355	C	C	126887355	1	2	55	0	1	0	0	0	0	0	0	0	12710	1508	52	5		5	PRRC1	5	126887355	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4725565	126887355	54027905	344	61547											
SEPT8	23176	broad.mit.edu	37	chr5	132099163	132099163	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgattcagctgcaagcaagGggctcagggtcagacccagg	14	10	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132099163	A	A	132099163	1	1	55	0	1	0	0	0	0	0	0	0	14183	1247	43	4		4	SEPT8	5	132099163	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5211808	132099163	48816097	345	61548											
CXCL14	9547	broad.mit.edu	37	chr5	134907615	134907615	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaggcaggccgttcacaAgatgctggctaagcggcttc	13	11	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134907615	G	G	134907615	1	3	55	0	1	0	0	0	0	0	0	0	4115	87	3	5		5	CXCL14	5	134907615	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2808452	134907615	46007645	346	61549											
REEP2	51308	broad.mit.edu	37	chr5	137780258	137780258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctcacctcccagcctGcccccagccaaggcagtcca	7	21	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137780258	T	T	137780258	1	4	55	0	1	0	0	0	0	0	0	0	13313	1334	46	3		3	REEP2	5	137780258	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2872643	137780258	43135002	347	61550											
PCDHA6	56142	broad.mit.edu	37	chr5	140208840	140208840	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgggcaggtgaactgctcGctgacgcctcacgtcccttt	11	14	1	2	rs365581		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140208840	T	T	140208840	2	4	55	1	0	0	0	0	0	0	0	1	11622	1074	38	3		3	PCDHA6	5	140208840	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2428582	140208840	40706420	348	61551											
PCDHA12	56137	broad.mit.edu	37	chr5	140256799	140256799	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcgcagttagcgagttggTaccgcggtcggtgggtgcgg	20	8	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140256799	A	A	140256799	3	1	55	1	0	0	0	0	1	0	0	0	11616	1638	57	5	1744	5	PCDHA12	5	140256799	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	47959	140256799	40658461	349	61552											
PCDHAC1	56135	broad.mit.edu	37	chr5	140307540	140307540	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtacctgaggacgctgccCctggcacagtgattgctctc	11	14	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140307540	T	T	140307540	3	4	55	1	0	0	0	0	1	0	0	0	11626	623	22	4	1065	4	PCDHAC1	5	140307540	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	50741	140307540	40607720	350	61553											
FBXO38	81545	broad.mit.edu	37	chr5	147781509	147781509	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaatgttaatgaacagaaaGatgaacctggctctaaatac	7	6	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147781509	C	C	147781509	1	2	55	0	1	0	0	0	0	0	0	0	5803	957	33	4		4	FBXO38	5	147781509	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	7473969	147781509	33133751	351	61554											
ABLIM3	22885	broad.mit.edu	37	chr5	148577544	148577544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatactgatgctagtggcCtactggccattctttaagga	11	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148577544	A	A	148577544	1	1	55	0	1	0	0	0	0	0	0	0	96	696	24	2		2	ABLIM3	5	148577544	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	796035	148577544	32337716	352	61555											
CYFIP2	26999	broad.mit.edu	37	chr5	156753138	156753138	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagctgtcttccttaagggGggttattagcaagcggctgg	14	7	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156753138	A	A	156753138	1	1	55	0	1	0	0	0	0	0	0	0	4171	1247	43	4		4	CYFIP2	5	156753138	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8175594	156753138	24162122	353	61556											
RNF145	153830	broad.mit.edu	37	chr5	158596136	158596136	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcaaagagaaaaataatcCaaaggcttagactcttgtta	6	6	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158596136	G	G	158596136	1	3	55	0	1	0	0	0	0	0	0	0	13558	609	21	4		4	RNF145	5	158596136	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1842998	158596136	22319124	354	61557											
KCNIP1	30820	broad.mit.edu	37	chr5	169894018	169894018	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattactgagaatgtgagtgTaataaaaccgagactcaaaa	8	6	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169894018	A	A	169894018	1	1	55	0	1	0	0	0	0	0	0	0	8109	1653	57	5		5	KCNIP1	5	169894018	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	11297882	169894018	11021242	355	61558											
EIF4E1B	253314	broad.mit.edu	37	chr5	176064757	176064757	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagaggagggctggagggagGagggccttgtgggctcctgc	22	7	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176064757	A	A	176064757	1	1	55	0	1	0	0	0	0	0	0	0	5071	1189	41	4		4	EIF4E1B	5	176064757	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6170739	176064757	4850503	356	61559											
ZNF354B	117608	broad.mit.edu	37	chr5	178310767	178310767	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catactggagagaaattgtaTaattgtaatgaatgtggtaa	10	2	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178310767	A	A	178310767	4	1	55	1	0	0	0	0	0	1	0	0	17991	1413	49	5	1328	5	ZNF354B	5	178310767	Nonsense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2246010	178310767	2604493	357	61560											
MAPK9	5601	broad.mit.edu	37	chr5	179674963	179674963	+	Intron	DEL	C	-	-													gattaaaaaccagctagagtCccccatcttttttcttcaaa							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179674963	-	-	179674963	6	5	55	0	1	1	0	1	0	0	0	0	9379	870	30	0		0	MAPK9	5	179674963	Intron	DEL	C	TCGA-17-Z023-01A-01W-0746-08	1364196	179674963	1240297	358	61561											
F13A1	2162	broad.mit.edu	37	chr6	6191317	6191317	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcctcaccctgctttggctCgcgcacggtgcgtgcaccca	11	17	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6191317	T	T	6191317	1	4	55	0	1	0	0	0	0	0	0	0	5383	899	31	4		4	F13A1	6	6191317	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08		6191317	164923750	359	61562											
OR2B6	26212	broad.mit.edu	37	chr6	27925319	27925319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtggctgtgtagcccagCttttcatatttctggccttg	10	10	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27925319	A	A	27925319	3	1	55	1	0	0	0	0	1	0	0	0	11085	797	28	3	303	3	OR2B6	6	27925319	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	21734002	27925319	143189748	360	61563											
HLA-G	3135	broad.mit.edu	37	chr6	29855505	29855505	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccacgcacccaccgggacTcagattctccccagacgccg	8	21	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29855505	G	G	29855505	1	3	55	0	1	0	0	0	0	0	0	0	7279	1566	54	5		5	HLA-G	6	29855505	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1930186	29855505	141259562	361	61564											
SKIV2L	6499	broad.mit.edu	37	chr6	31927197	31927197	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgagtgacttttgaccctAacctttgacccgcattgagt	9	11	0	5			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31927197	G	G	31927197	1	3	55	0	1	0	0	0	0	0	0	0	14472	377	13	5		5	SKIV2L	6	31927197	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2071692	31927197	139187870	362	61565											
NOTCH4	4855	broad.mit.edu	37	chr6	32181752	32181752	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctccgttctcaccacctcCcacacatcacccgtgtcccc	3	23	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32181752	T	T	32181752	1	4	55	0	1	0	0	0	0	0	0	0	10646	638	22	4		4	NOTCH4	6	32181752	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	254555	32181752	138933315	363	61566											
RING1	6015	broad.mit.edu	37	chr6	33179845	33179845	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtctgggccacatagaAccatgagcctggtctaactc	12	11	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33179845	G	G	33179845	1	3	55	0	1	0	0	0	0	0	0	0	13485	58	2	5		5	RING1	6	33179845	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	998093	33179845	137935222	364	61567											
ZFAND3	60685	broad.mit.edu	37	chr6	38087430	38087430	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccaattaaaggcagggAagacgctccaaagggaagag	15	7	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38087430	C	C	38087430	1	2	55	0	1	0	0	0	0	0	0	0	17755	261	9	5		5	ZFAND3	6	38087430	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4907585	38087430	133027637	365	61568											
DAAM2	23500	broad.mit.edu	37	chr6	39851749	39851749	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaattttaggagcgtgtcccTggcaccgtatggaatgagat	13	7	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39851749	A	A	39851749	2	1	55	1	0	0	0	0	0	0	0	1	4249	1567	55	5		5	DAAM2	6	39851749	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1764319	39851749	131263318	366	61569											
CNPY3	10695	broad.mit.edu	37	chr6	42906450	42906450	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggagctgggtggccttgAgggagaccccagccccgagg	18	11	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42906450	G	G	42906450	3	3	55	1	0	0	0	0	1	0	0	0	3661	304	11	5	780	5	CNPY3	6	42906450	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3054701	42906450	128208617	367	61570											
PEX6	5190	broad.mit.edu	37	chr6	42934365	42934365	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcagcacacagctccccCtcatcctcctcagtcaagcc	6	21	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42934365	T	T	42934365	2	4	55	1	0	0	0	0	0	0	0	1	11845	680	24	4		4	PEX6	6	42934365	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	27915	42934365	128180702	368	61571											
ABCC10	89845	broad.mit.edu	37	chr6	43413494	43413494	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggccgtgctgggctctgGcctgccctggctgctgctcc	14	17	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43413494	C	C	43413494	3	2	55	1	0	0	0	0	1	0	0	0	50	1203	42	4	3154	4	ABCC10	6	43413494	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	479129	43413494	127701573	369	61572											
CAPN11	11131	broad.mit.edu	37	chr6	44143772	44143772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccatgccctccatgcCctccatgctctccctccctc	4	23	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44143772	A	A	44143772	1	1	55	0	1	0	0	0	0	0	0	0	2650	638	22	2		2	CAPN11	6	44143772	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	730278	44143772	126971295	370	61573											
CDC5L	988	broad.mit.edu	37	chr6	44413375	44413375	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatgtatgctgatgtgatCttcccctgctctccagataa	7	12	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44413375	A	A	44413375	1	1	55	0	1	0	0	0	0	0	0	0	3112	928	32	3		3	CDC5L	6	44413375	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	269603	44413375	126701692	371	61574											
RCAN2	10231	broad.mit.edu	37	chr6	46223459	46223459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgagccagataagctgcGtgagaaacaggaggagtgac	14	8	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46223459	T	T	46223459	1	4	55	0	1	0	0	0	0	0	0	0	13277	1160	40	3		3	RCAN2	6	46223459	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1810084	46223459	124891608	372	61575											
CYP39A1	51302	broad.mit.edu	37	chr6	46598671	46598671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggacagtggagagcaaCgtaactcatactttactaat	9	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46598671	A	A	46598671	1	1	55	0	1	0	0	0	0	0	0	0	4210	551	19	3		3	CYP39A1	6	46598671	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	375212	46598671	124516396	373	61576											
PKHD1	5314	broad.mit.edu	37	chr6	51918001	51918001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagggggctggagatccccGaagcaacgcacacaagtctc	14	12	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51918001	T	T	51918001	3	4	55	1	0	0	0	0	1	0	0	0	12066	1049	37	3	10438	3	PKHD1	6	51918001	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5319330	51918001	119197066	374	61577											
EFHC1	114327	broad.mit.edu	37	chr6	52380672	52380672	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagctaagaaggttctaaGaaacttgttccccttaacag	8	8	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52380672	C	C	52380672	1	2	55	0	1	0	0	0	0	0	0	0	4986	957	33	4		4	EFHC1	6	52380672	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	462671	52380672	118734395	375	61578											
EYS	346007	broad.mit.edu	37	chr6	66102467	66102467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagacacatgaaaaaatgCtcaccatcactggccatcag	6	11	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66102467	A	A	66102467	1	1	55	0	1	0	0	0	0	0	0	0	5375	812	28	3		3	EYS	6	66102467	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	13721795	66102467	105012600	376	61579											
LMBRD1	55788	broad.mit.edu	37	chr6	70423728	70423728	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaaagttttaccattaaCatcttaataaagtacccagc	3	8	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70423728	T	T	70423728	1	4	55	0	1	0	0	0	0	0	0	0	8916	493	17	4		4	LMBRD1	6	70423728	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4321261	70423728	100691339	377	61580											
COL19A1	1310	broad.mit.edu	37	chr6	70854181	70854181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttacattttcctcattttAtatgttaagtagataggagg	8	4	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70854181	T	T	70854181	1	4	55	0	1	0	0	0	0	0	0	0	3708	464	16	5		5	COL19A1	6	70854181	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	430453	70854181	100260886	378	61581											
COL9A1	1297	broad.mit.edu	37	chr6	70935644	70935644	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacacttacctgggagacCtatagctccaggcaaaccgt	8	13	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70935644	T	T	70935644	3	4	55	1	0	0	0	0	1	0	0	0	3739	681	24	4	201	4	COL9A1	6	70935644	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	81463	70935644	100179423	379	61582											
RIMS1	22999	broad.mit.edu	37	chr6	72970294	72970294	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaacctctcaagcaaatatGctagtgcagacaatctggtt	7	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72970294	A	A	72970294	1	1	55	0	1	0	0	0	0	0	0	0	13478	1334	46	4		4	RIMS1	6	72970294	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2034650	72970294	98144773	380	61583											
C6orf221	154288	broad.mit.edu	37	chr6	74072764	74072764	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctccttccaccttcccctCccaagacccccgggagccac	5	23	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74072764	A	A	74072764	1	1	55	0	1	0	0	0	0	0	0	0	2378	870	30	3		3	C6orf221	6	74072764	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1102470	74072764	97042303	381	61584											
C6orf221	154288	broad.mit.edu	37	chr6	74073205	74073205	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctcctactcccgcaggccGcttgggtgactgtccttttt	11	14	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74073205	C	C	74073205	1	2	55	0	1	0	0	0	0	0	0	0	2378	1102	38	4		4	C6orf221	6	74073205	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	441	74073205	97041862	382	61585											
DDX43	55510	broad.mit.edu	37	chr6	74104455	74104455	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcactggccaatggctgCgtgaaatcagtgcgaagtgg	14	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74104455	A	A	74104455	1	1	55	0	1	0	0	0	0	0	0	0	4396	783	27	3		3	DDX43	6	74104455	5'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	31250	74104455	97010612	383	61586											
DDX43	55510	broad.mit.edu	37	chr6	74104733	74104733	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaggccggcggaggagttGaatcgaacaggtcctgaggg	19	7	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74104733	C	C	74104733	3	2	55	1	0	0	0	0	1	0	0	0	4396	1281	45	4	107	4	DDX43	6	74104733	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	278	74104733	97010334	384	61587											
COL12A1	1303	broad.mit.edu	37	chr6	75830863	75830863	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattgatttatcatttatacCcaattccctcccaaaaatac	1	11	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75830863	G	G	75830863	1	3	55	0	1	0	0	0	0	0	0	0	3701	638	22	4		4	COL12A1	6	75830863	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1726130	75830863	95284204	385	61588											
FILIP1	27145	broad.mit.edu	37	chr6	76028626	76028626	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaaaaaaaaagacactgTacagtttaaaaaatcttaca	3	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76028626	C	C	76028626	1	2	55	0	1	0	0	0	0	0	0	0	5951	1653	57	5		5	FILIP1	6	76028626	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	197763	76028626	95086441	386	61589											
FILIP1	27145	broad.mit.edu	37	chr6	76029523	76029523	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccactgcactccagcctggGcaacagagcaagactccgtc	10	16	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76029523	A	A	76029523	1	1	55	0	1	0	0	0	0	0	0	0	5951	1218	42	4		4	FILIP1	6	76029523	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	897	76029523	95085544	387	61590											
SNX14	57231	broad.mit.edu	37	chr6	86259576	86259576	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcttctaaagcagcttgcTgtaaaaactctgtatttttt	5	7	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86259576	A	A	86259576	3	1	55	1	0	0	0	0	1	0	0	0	14999	1580	55	5	2272	5	SNX14	6	86259576	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	10230053	86259576	84855491	388	61591											
MANEA	79694	broad.mit.edu	37	chr6	96053765	96053765	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggtctcggagtattcgCaattctccttatgatggact	10	9	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96053765	A	A	96053765	2	1	55	1	0	0	0	0	0	0	0	1	9313	697	25	3		3	MANEA	6	96053765	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	9794189	96053765	75061302	389	61592											
KIAA0776	23376	broad.mit.edu	37	chr6	96973331	96973331	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttcttttttttataGtgtttaaatttaggccaatt	4	4	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96973331	A	A	96973331	1	1	55	0	1	0	0	0	0	0	0	0	8263	1044	36	4		4	KIAA0776	6	96973331	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	919566	96973331	74141736	390	61593											
NDUFAF4	29078	broad.mit.edu	37	chr6	97345748	97345748	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggacaactccgggacaCccggagcatgcgcacaagtg	13	14	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97345748	A	A	97345748	1	1	55	0	1	0	0	0	0	0	0	0	10372	522	18	3		3	NDUFAF4	6	97345748	5'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	372417	97345748	73769319	391	61594											
KLHL32	114792	broad.mit.edu	37	chr6	97423825	97423825	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgagagagcagctggcccaCagggctgggaaaaggaaaaa	15	7	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97423825	G	G	97423825	1	3	55	0	1	0	0	0	0	0	0	0	8457	493	17	4		4	KLHL32	6	97423825	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	78077	97423825	73691242	392	61595											
AIM1	202	broad.mit.edu	37	chr6	106967275	106967275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaatggagcaacctgaaaAgaaagtaatgccaaacagtc	9	7	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106967275	T	T	106967275	3	4	55	1	0	0	0	0	1	0	0	0	430	72	3	5	974	5	AIM1	6	106967275	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	9543450	106967275	64147792	393	61596											
LAMA4	3910	broad.mit.edu	37	chr6	112460430	112460430	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgatgtctctcaccacGgcataaccggagccatcgaa	9	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112460430	T	T	112460430	2	4	55	1	0	0	0	0	0	0	0	1	8680	1103	39	1		1	LAMA4	6	112460430	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5493155	112460430	58654637	394	61597											
ROS1	6098	broad.mit.edu	37	chr6	117647397	117647397	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaacatacctccaactaaTataatattctcactgattcc	3	11	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117647397	C	C	117647397	3	2	55	1	0	0	0	0	1	0	0	0	13642	1396	49	5	1540	5	ROS1	6	117647397	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5186967	117647397	53467670	395	61598											
CLVS2	134829	broad.mit.edu	37	chr6	123376820	123376820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttacagagtagatgactGgctaaagtactttaacagac	9	6	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123376820	T	T	123376820	1	4	55	0	1	0	0	0	0	0	0	0	3604	1363	47	2		2	CLVS2	6	123376820	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5729423	123376820	47738247	396	61599											
C6orf174	387104	broad.mit.edu	37	chr6	127797313	127797313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcatcgcccctaaggtcgtCcagttccgccttcaggcctc	9	17	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127797313	A	A	127797313	3	1	55	1	0	0	0	0	1	0	0	0	2368	855	30	3	993	3	C6orf174	6	127797313	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4420493	127797313	43317754	397	61600											
TAAR6	319100	broad.mit.edu	37	chr6	132891805	132891805	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgctgtgatgtggcattTtgttactcttctctctttca	7	10	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132891805	C	C	132891805	2	2	55	1	0	0	0	0	0	0	0	1	15611	1838	64	5		5	TAAR6	6	132891805	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5094492	132891805	38223262	398	61601											
TAAR1	134864	broad.mit.edu	37	chr6	132967038	132967038	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agattgccaacgagtgtggtCagaattatgagcaccattaa	10	7	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132967038	A	A	132967038	2	1	55	1	0	0	0	0	0	0	0	1	15608	813	29	3		3	TAAR1	6	132967038	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	75233	132967038	38148029	399	61602											
GRM1	2911	broad.mit.edu	37	chr6	146686077	146686077	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taactgtcacatccacctcaGcttttttccctctttgtgaa	4	13	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146686077	C	C	146686077	1	2	55	0	1	0	0	0	0	0	0	0	6862	986	34	4		4	GRM1	6	146686077	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	13719039	146686077	24428990	400	61603											
ZDHHC14	79683	broad.mit.edu	37	chr6	157915295	157915295	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgaagtgctgggccctcCctgggaactgtttgacacaa	12	11	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157915295	T	T	157915295	1	4	55	0	1	0	0	0	0	0	0	0	17730	638	22	4		4	ZDHHC14	6	157915295	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	11229218	157915295	13199772	401	61604											
LPA	4018	broad.mit.edu	37	chr6	160999840	160999840	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtgttaacaagtgcctttGaaatattcccattataccac	5	9	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160999840	C	C	160999840	1	2	55	0	1	0	0	0	0	0	0	0	8990	1305	45	4		4	LPA	6	160999840	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3084545	160999840	10115227	402	61605											
PARK2	5071	broad.mit.edu	37	chr6	162715147	162715148	+	Intron	INS	-	AT	AT													cggctgaatagagaggcatcINSattgggaggcaggagagatg					rs140315750	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	162715148	AT	AT	162715147	6	5	55	0	1	1	1	0	0	0	0	0	11543	841	29	0		0	PARK2	6	162715147	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	1715307	162715147	8399920	403	61606											
PDE10A	10846	broad.mit.edu	37	chr6	165989833	165989833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagagctatagagtactaGtttgcttcctgtctatctga	8	8	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165989833	T	T	165989833	1	4	55	0	1	0	0	0	0	0	0	0	11724	1044	36	3		3	PDE10A	6	165989833	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3274686	165989833	5125234	404	61607											
FOXK1	221937	broad.mit.edu	37	chr7	4780475	4780476	+	Frame_Shift_Ins	INS	-	T	T													cctcctgttgcaggtgtaccINSttccggtttcccagcacggc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4780476	T	T	4780475	7	5	55	1	0	1	1	0	0	0	0	0	6074	668	24	0	573	0	FOXK1	7	4780475	Frame_Shift_Ins	INS	-	TCGA-17-Z023-01A-01W-0746-08		4780475	154358188	405	61608											
COL28A1	340267	broad.mit.edu	37	chr7	7420262	7420262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttgcaagcacaaaaccCtcaattaccctctagaatgg	5	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7420262	A	A	7420262	1	1	55	0	1	0	0	0	0	0	0	0	3718	696	24	2		2	COL28A1	7	7420262	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2639787	7420262	151718401	406	61609											
COL28A1	340267	broad.mit.edu	37	chr7	7421151	7421151	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgatcctaagcctaagcattTctctaagatcctgagacact	6	12	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7421151	G	G	7421151	1	3	55	0	1	0	0	0	0	0	0	0	3718	1798	62	5		5	COL28A1	7	7421151	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	889	7421151	151717512	407	61610											
NXPH1	30010	broad.mit.edu	37	chr7	8475641	8475641	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaggggctagggcgcccCagacaccctaaacccaagga	12	13	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8475641	T	T	8475641	1	4	55	0	1	0	0	0	0	0	0	0	10885	609	21	4		4	NXPH1	7	8475641	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1054490	8475641	150663022	408	61611											
THSD7A	221981	broad.mit.edu	37	chr7	11676589	11676614	+	Splice_Site	DEL	CTACAAAAATTATAACACAAAAATTA	-	-													catacatcggccccatggacCtacaaaaattataacacaaa							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11676614	-	-	11676589	8	5	55	1	0	1	0	1	0	0	1	0	16002	695	24	0	4887	0	THSD7A	7	11676589	Splice_Site	DEL	CTACAAAAATTATAACACAAAAATTA	TCGA-17-Z023-01A-01W-0746-08	3200948	11676589	147462074	409	61612											
DGKB	1607	broad.mit.edu	37	chr7	14724830	14724830	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgaaatcaacctttcctcActtgaggagatgatgtccag	8	10	2	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14724830	T	T	14724830	1	4	55	0	1	0	0	0	0	0	0	0	4506	174	6	5		5	DGKB	7	14724830	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3048241	14724830	144413833	410	61613											
AGR3	155465	broad.mit.edu	37	chr7	16904134	16904134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgttccctgtcagtcagGgcttccattttcagtcttcc	7	14	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16904134	T	T	16904134	1	4	55	0	1	0	0	0	0	0	0	0	396	1247	43	2		2	AGR3	7	16904134	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2179304	16904134	142234529	411	61614											
ITGB8	3696	broad.mit.edu	37	chr7	20449250	20449250	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattacagaatgtttctccaGcccaagctacttgagaatat	6	10	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20449250	C	C	20449250	3	2	55	1	0	0	0	0	1	0	0	0	7971	971	34	4	2086	4	ITGB8	7	20449250	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3545116	20449250	138689413	412	61615											
ABCB5	340273	broad.mit.edu	37	chr7	20725459	20725459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatccacccaatctaaagaGgtaatggctcagcgatcaac	8	11	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20725459	T	T	20725459	3	4	55	1	0	0	0	0	1	0	0	0	44	1014	35	2	2109	2	ABCB5	7	20725459	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	276209	20725459	138413204	413	61616											
ABCB5	340273	broad.mit.edu	37	chr7	20792926	20792926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggttctcgcccacagttGccatgctaatttaaataacc	7	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20792926	T	T	20792926	1	4	55	0	1	0	0	0	0	0	0	0	44	1334	46	3		3	ABCB5	7	20792926	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	67467	20792926	138345737	414	61617											
STK31	56164	broad.mit.edu	37	chr7	23825087	23825087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttaactgtgataaaaacTtgtgcctagaactctggtgg	9	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23825087	C	C	23825087	1	2	55	0	1	0	0	0	0	0	0	0	15414	1624	56	5		5	STK31	7	23825087	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3032161	23825087	135313576	415	61618											
STK31	56164	broad.mit.edu	37	chr7	23827750	23827750	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacttcaccaaatctgtggTaagatatcatggttttacaa	7	7	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23827750	A	A	23827750	5	1	55	1	0	0	0	0	0	0	1	0	15414	1652	57	5	2721	5	STK31	7	23827750	Splice_Site	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2663	23827750	135310913	416	61619											
OSBPL3	26031	broad.mit.edu	37	chr7	24932098	24932098	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcactcatcatggacagCaagtcacttggcctcgagac	8	13	5	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24932098	G	G	24932098	1	3	55	0	1	0	0	0	0	0	0	0	11373	725	25	4		4	OSBPL3	7	24932098	5'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1104348	24932098	134206565	417	61620											
CCDC129	223075	broad.mit.edu	37	chr7	31690715	31690715	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgagctcttgcagaggatCagagaggactttcttctcag	13	8	4	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31690715	T	T	31690715	1	4	55	0	1	0	0	0	0	0	0	0	2790	841	29	4		4	CCDC129	7	31690715	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	6758617	31690715	127447948	418	61621											
BBS9	27241	broad.mit.edu	37	chr7	33645040	33645040	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggggaagtcagctgaaaCttgtcttgttttgccaggaa	12	7	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33645040	T	T	33645040	1	4	55	0	1	0	0	0	0	0	0	0	1347	580	20	4		4	BBS9	7	33645040	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1954325	33645040	125493623	419	61622											
ELMO1	9844	broad.mit.edu	37	chr7	36895172	36895172	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttcagttacagtcatagAcgaagtcatagttgctgggc	10	9	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36895172	G	G	36895172	3	3	55	1	0	0	0	0	1	0	0	0	5107	275	10	5	19	5	ELMO1	7	36895172	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3250132	36895172	122243491	420	61623											
TARP	445347	broad.mit.edu	37	chr7	38313147	38313147	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctcctgcctgccagcctCccatcccttctttacattgc	5	19	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38313147	A	A	38313147	1	1	55	0	1	0	0	0	0	0	0	0	15677	870	30	3		3	TARP	7	38313147	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1417975	38313147	120825516	421	61624											
TARP	445347	broad.mit.edu	37	chr7	38356520	38356520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttaaaaactgtttacaaGcacactggtggtaactgtgg	9	7	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38356520	T	T	38356520	1	4	55	0	1	0	0	0	0	0	0	0	15677	986	34	3		3	TARP	7	38356520	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	43373	38356520	120782143	422	61625											
VPS41	27072	broad.mit.edu	37	chr7	38767992	38767992	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcaccagcattccacTgagcaggatggaagccacaa	11	12	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38767992	C	C	38767992	1	2	55	0	1	0	0	0	0	0	0	0	17337	1595	55	5		5	VPS41	7	38767992	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	411472	38767992	120370671	423	61626											
INHBA	3624	broad.mit.edu	37	chr7	41729647	41729647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagactgccgggcctgcagCatgaggaaaggtctgtgcga	15	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41729647	A	A	41729647	3	1	55	1	0	0	0	0	1	0	0	0	7811	710	25	3	402	3	INHBA	7	41729647	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2961655	41729647	117409016	424	61627											
PPIA	5478	broad.mit.edu	37	chr7	44836291	44836291	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgtgccgttttgcagacGccaccgccgaggaaaaccgt	12	14	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44836291	T	T	44836291	1	4	55	0	1	0	0	0	0	0	0	0	12412	1102	38	3		3	PPIA	7	44836291	5'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3106644	44836291	114302372	425	61628											
TNS3	64759	broad.mit.edu	37	chr7	47385804	47385804	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctctttgacgtccgctggtGaggggaatggcggcaggttt	16	9	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47385804	A	A	47385804	3	1	55	1	0	0	0	0	1	0	0	0	16467	1294	45	4	1961	4	TNS3	7	47385804	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2549513	47385804	111752859	426	61629											
HUS1	3364	broad.mit.edu	37	chr7	48016360	48016360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccggttcttgtaagtcCttccacaatttcctaggaat	6	12	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48016360	A	A	48016360	3	1	55	1	0	0	0	0	1	0	0	0	7529	680	24	2	430	2	HUS1	7	48016360	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	630556	48016360	111122303	427	61630											
CCT6A	908	broad.mit.edu	37	chr7	56126388	56126388	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagagctaaaaggagaaatAtggagaggtatccgagtaat	13	4	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56126388	G	G	56126388	3	3	55	1	0	0	0	0	1	0	0	0	2987	449	16	5	991	5	CCT6A	7	56126388	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	8110028	56126388	103012275	428	61631											
ZNF727	442319	broad.mit.edu	37	chr7	63538757	63538757	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacctgactaatcataagAgaattcacactggagagaag	9	8	2	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63538757	G	G	63538757	3	3	55	1	0	0	0	0	1	0	0	0	18251	296	11	5	1344	5	ZNF727	7	63538757	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	7412369	63538757	95599906	429	61632											
ZNF92	168374	broad.mit.edu	37	chr7	64853653	64853653	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcatcctctttactgagCatattactatgttggtaatt	6	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64853653	T	T	64853653	1	4	55	0	1	0	0	0	0	0	0	0	18330	725	25	4		4	ZNF92	7	64853653	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1314896	64853653	94285010	430	61633											
RABGEF1	27342	broad.mit.edu	37	chr7	66103432	66103432	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaaaggtgagggtcagctGcccaggatggtgggtatgtg	17	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66103432	A	A	66103432	1	1	55	0	1	0	0	0	0	0	0	0	13074	1334	46	4		4	RABGEF1	7	66103432	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1249779	66103432	93035231	431	61634											
WBSCR17	64409	broad.mit.edu	37	chr7	70875799	70875799	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtatgcatacctccctctCcagtccttcctgatcacagg	7	15	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70875799	T	T	70875799	1	4	55	0	1	0	0	0	0	0	0	0	17391	870	30	4		4	WBSCR17	7	70875799	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4772367	70875799	88262864	432	61635											
WBSCR17	64409	broad.mit.edu	37	chr7	70965589	70965589	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaactcagacactcaccccCtgccacttccttgcttgtcc	5	18	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70965589	T	T	70965589	1	4	55	0	1	0	0	0	0	0	0	0	17391	696	24	4		4	WBSCR17	7	70965589	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	89790	70965589	88173074	433	61636											
BAZ1B	9031	broad.mit.edu	37	chr7	72861596	72861596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcagacaaaatacttacatCgcaaaccagccacctcataa	5	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72861596	A	A	72861596	3	1	55	1	0	0	0	0	1	0	0	0	1335	884	31	3	625	3	BAZ1B	7	72861596	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1896007	72861596	86277067	434	61637											
PTPN12	5782	broad.mit.edu	37	chr7	77256164	77256164	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaatgatagataccatccaAagccagtgttgcatatggtt	8	8	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77256164	T	T	77256164	4	4	55	1	0	0	0	0	0	1	0	0	12887	15	1	5	1218	5	PTPN12	7	77256164	Nonsense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4394568	77256164	81882499	435	61638											
MAGI2	9863	broad.mit.edu	37	chr7	78338500	78338501	+	Intron	DEL	AT	-	-													tctgacgtcttaactatgtcAtacaaagcctctaatgagat							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78338501	-	-	78338500	6	5	55	0	1	1	0	1	0	0	0	0	9283	232	8	0		0	MAGI2	7	78338500	Intron	DEL	AT	TCGA-17-Z023-01A-01W-0746-08	1082336	78338500	80800163	436	61639											
GRM3	2913	broad.mit.edu	37	chr7	86416430	86416430	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgaaaatcaacttcaCgggtaagccaagagccttta	8	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86416430	T	T	86416430	3	4	55	1	0	0	0	0	1	0	0	0	6864	536	19	4	1328	4	GRM3	7	86416430	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	8077930	86416430	72722233	437	61640											
ABCB4	5244	broad.mit.edu	37	chr7	87035540	87035540	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaagattttgttggcataActttggtaattgtttggggg	12	3	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87035540	G	G	87035540	1	3	55	0	1	0	0	0	0	0	0	0	43	58	2	5		5	ABCB4	7	87035540	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	619110	87035540	72103123	438	61641											
ADAM22	53616	broad.mit.edu	37	chr7	87816014	87816014	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacactgaaggaccatacttTaggtattttataaattaatt	5	5	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87816014	C	C	87816014	1	2	55	0	1	0	0	0	0	0	0	0	244	1751	61	5		5	ADAM22	7	87816014	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	780474	87816014	71322649	439	61642											
CDK14	5218	broad.mit.edu	37	chr7	90492456	90492456	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attagttgattgttatccacGataaattgtttctctgtcca	6	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90492456	T	T	90492456	1	4	55	0	1	0	0	0	0	0	0	0	3160	1073	37	3		3	CDK14	7	90492456	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2676442	90492456	68646207	440	61643											
COL1A2	1278	broad.mit.edu	37	chr7	94037114	94037114	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcactatcaggaaaaatAattgttatatttaatgaaca	5	4	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94037114	G	G	94037114	1	3	55	0	1	0	0	0	0	0	0	0	3710	377	13	5		5	COL1A2	7	94037114	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3544658	94037114	65101549	441	61644											
COL1A2	1278	broad.mit.edu	37	chr7	94040380	94040380	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatagggccctcctggtAgtcgtggtgcaagtggccct	14	10	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94040380	T	T	94040380	3	4	55	1	0	0	0	0	1	0	0	0	3710	420	15	5	1354	5	COL1A2	7	94040380	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3266	94040380	65098283	442	61645											
PPP1R9A	55607	broad.mit.edu	37	chr7	94881459	94881459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtttgtttaacccaacCacaaaaatcatttttgatga	5	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94881459	A	A	94881459	1	1	55	0	1	0	0	0	0	0	0	0	12479	609	21	2		2	PPP1R9A	7	94881459	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	841079	94881459	64257204	443	61646											
SLC25A13	10165	broad.mit.edu	37	chr7	95750584	95750584	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtccaaatttgttttcaatCcctgcaaatgtagcaactgc	6	10	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95750584	A	A	95750584	2	1	55	1	0	0	0	0	0	0	0	1	14589	842	30	3		3	SLC25A13	7	95750584	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	869125	95750584	63388079	444	61647											
TRRAP	8295	broad.mit.edu	37	chr7	98547352	98547352	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctctggtgagccagttgCgacgtgtgtgggtgagtgag	17	7	1	3	rs149035665		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98547352	T	T	98547352	4	4	55	1	0	0	0	0	0	1	0	0	16726	760	27	4	5082	4	TRRAP	7	98547352	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2796768	98547352	60591311	445	61648											
TRRAP	8295	broad.mit.edu	37	chr7	98564703	98564703	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccattttgcttgtgaagAtgatgacttacatagaaaaa	8	5	0	5			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98564703	C	C	98564703	3	2	55	1	0	0	0	0	1	0	0	0	16726	333	12	5	7327	5	TRRAP	7	98564703	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	17351	98564703	60573960	446	61649											
SMURF1	57154	broad.mit.edu	37	chr7	98634636	98634636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaaggatttaaaacagGcagacgccagccacagggac	12	11	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98634636	T	T	98634636	1	4	55	0	1	0	0	0	0	0	0	0	14933	1218	42	3		3	SMURF1	7	98634636	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	69933	98634636	60504027	447	61650											
AZGP1	563	broad.mit.edu	37	chr7	99569382	99569382	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgaccgttactgtcgttGtaatactccacgatgtcttt	7	11	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99569382	C	C	99569382	4	2	55	1	0	0	0	0	0	1	0	0	1244	1372	48	4	584	4	AZGP1	7	99569382	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	934746	99569382	59569281	448	61651											
AGFG2	3268	broad.mit.edu	37	chr7	100151876	100151876	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgctgcattccctgcctTtgggggtaagtgggttttgg	14	7	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100151876	C	C	100151876	3	2	55	1	0	0	0	0	1	0	0	0	381	1841	64	5	764	5	AGFG2	7	100151876	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	582494	100151876	58986787	449	61652											
SLC26A5	375611	broad.mit.edu	37	chr7	103048344	103048344	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccggcaatttctctttaaatCtctcattaaactccttgcca	3	13	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103048344	T	T	103048344	3	4	55	1	0	0	0	0	1	0	0	0	14634	913	32	4	1485	4	SLC26A5	7	103048344	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2896468	103048344	56090319	450	61653											
RELN	5649	broad.mit.edu	37	chr7	103124140	103124140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctctgagcttgtgtgaagtCctttggctggtgctgggcga	15	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103124140	A	A	103124140	3	1	55	1	0	0	0	0	1	0	0	0	13328	855	30	3	257	3	RELN	7	103124140	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	75796	103124140	56014523	451	61654											
CDHR3	222256	broad.mit.edu	37	chr7	105660902	105660902	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggccctcccagtggatctGaaagttggcacaaatattca	9	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105660902	C	C	105660902	2	2	55	1	0	0	0	0	0	0	0	1	3150	1277	45	4		4	CDHR3	7	105660902	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2536762	105660902	53477761	452	61655											
PIK3CG	5294	broad.mit.edu	37	chr7	106508152	106508152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgctgcccaccagccagcGcaaatgcaagagccccgaaa	10	16	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106508152	T	T	106508152	3	4	55	1	0	0	0	0	1	0	0	0	12011	1087	38	3	148	3	PIK3CG	7	106508152	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	847250	106508152	52630511	453	61656											
DLD	1738	broad.mit.edu	37	chr7	107558682	107558682	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcactctcacagtcttgcccActgtatcatctactttgtcc	5	15	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107558682	C	C	107558682	1	2	55	0	1	0	0	0	0	0	0	0	4591	174	6	5		5	DLD	7	107558682	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1050530	107558682	51579981	454	61657											
LAMB1	3912	broad.mit.edu	37	chr7	107596343	107596344	+	Intron	INS	-	T	T													cacaccaccacacctggctgINStttttttgtttgtttttgag					rs145671563	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107596344	T	T	107596343	6	5	55	0	1	1	1	0	0	0	0	0	8682	1392	48	0		0	LAMB1	7	107596343	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	37661	107596343	51542320	455	61658											
DOCK4	9732	broad.mit.edu	37	chr7	111503636	111503636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagccttaaaaagaagaagAcatttaaatcaactcccaga	5	9	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111503636	T	T	111503636	1	4	55	0	1	0	0	0	0	0	0	0	4729	290	10	5		5	DOCK4	7	111503636	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3907293	111503636	47635027	456	61659											
IFRD1	3475	broad.mit.edu	37	chr7	112108013	112108013	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaataataataaaggaaAcaaaattgcttttcttgtcc	5	5	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112108013	T	T	112108013	1	4	55	0	1	0	0	0	0	0	0	0	7623	58	2	5		5	IFRD1	7	112108013	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	604377	112108013	47030650	457	61660											
C7orf60	154743	broad.mit.edu	37	chr7	112461933	112461933	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagttgttcatcttctatatCtgatcgaacatagcaggaag	8	7	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112461933	G	G	112461933	3	3	55	1	0	0	0	0	1	0	0	0	2432	913	32	4	137	4	C7orf60	7	112461933	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	353920	112461933	46676730	458	61661											
KCND2	3751	broad.mit.edu	37	chr7	119914559	119914559	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagccctatcttggaataaGagttacacctctggaccacg	10	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119914559	T	T	119914559	1	4	55	0	1	0	0	0	0	0	0	0	8089	957	33	3		3	KCND2	7	119914559	5'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	7452626	119914559	39224104	459	61662											
GRM8	2918	broad.mit.edu	37	chr7	126538203	126538204	+	Intron	DNP	CA	TT	TT													cctcatggatatctcactttCagagagtgccttaacttttt							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	126538204	TT	TT	126538203	1	4	55	0	1	0	0	0	0	0	0	0	6869	841	29	4		4	GRM8	7	126538203	Intron	DNP	CA	TCGA-17-Z023-01A-01W-0746-08	6623644	126538203	32600460	460	61663											
FSCN3	29999	broad.mit.edu	37	chr7	127239453	127239453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccaaatgaggaatttgGgattttatttgccaatcgct	10	7	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127239453	T	T	127239453	3	4	55	1	0	0	0	0	1	0	0	0	6129	1232	43	2	1157	2	FSCN3	7	127239453	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	701250	127239453	31899210	461	61664											
SND1	27044	broad.mit.edu	37	chr7	127489936	127489936	+	Intron	DEL	T	-	-													agaccttgctatcagaggtaTtgtccaagttctgtgggggc					rs11302251		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127489936	-	-	127489936	6	5	55	0	1	1	0	1	0	0	0	0	14958	1508	52	0		0	SND1	7	127489936	Intron	DEL	T	TCGA-17-Z023-01A-01W-0746-08	250483	127489936	31648727	462	61665											
IMPDH1	3614	broad.mit.edu	37	chr7	128041005	128041005	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctcctcagccctgcccctCagcacagcccaccatggtca	6	21	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128041005	T	T	128041005	1	4	55	0	1	0	0	0	0	0	0	0	7796	841	29	4		4	IMPDH1	7	128041005	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	551069	128041005	31097658	463	61666											
FLNC	2318	broad.mit.edu	37	chr7	128492555	128492555	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccccgtgtctgttgagtccAgggggggctgctcaggaggg	18	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128492555	T	T	128492555	1	4	55	0	1	0	0	0	0	0	0	0	5993	203	7	5		5	FLNC	7	128492555	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	451550	128492555	30646108	464	61667											
MKLN1	4289	broad.mit.edu	37	chr7	131081983	131081983	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaaagttttatttgaactGtgttaatatttttcttcttc	5	5	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131081983	A	A	131081983	1	1	55	0	1	0	0	0	0	0	0	0	9696	1392	48	4		4	MKLN1	7	131081983	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2589428	131081983	28056680	465	61668											
LRGUK	136332	broad.mit.edu	37	chr7	133861613	133861613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatagtcctgtgagggtgtGtgtgggaatgatgaggtagt	18	3	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133861613	T	T	133861613	1	4	55	0	1	0	0	0	0	0	0	0	9030	1392	48	3		3	LRGUK	7	133861613	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2779630	133861613	25277050	466	61669											
LRGUK	136332	broad.mit.edu	37	chr7	133916125	133916125	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaagagcctttgctctcaTagccatcatctccattccca	5	14	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133916125	C	C	133916125	1	2	55	0	1	0	0	0	0	0	0	0	9030	1421	49	5		5	LRGUK	7	133916125	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	54512	133916125	25222538	467	61670											
DGKI	9162	broad.mit.edu	37	chr7	137150706	137150706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccggaggtgtccccgccgGctgtgacaccaccatatctg	12	16	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137150706	T	T	137150706	3	4	55	1	0	0	0	0	1	0	0	0	4511	1203	42	3	645	3	DGKI	7	137150706	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3234581	137150706	21987957	468	61671											
DGKI	9162	broad.mit.edu	37	chr7	137330263	137330263	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgccgacgcctgtgcacCcagtgatgacgtacaaaatt	9	13	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137330263	T	T	137330263	4	4	55	1	0	0	0	0	0	1	0	0	4511	624	22	4	2554	4	DGKI	7	137330263	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	179557	137330263	21808400	469	61672											
BRAF	673	broad.mit.edu	37	chr7	140507908	140507908	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggttattacacctaaaaAtattcatatacctcatgctg	4	9	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140507908	G	G	140507908	1	3	55	0	1	0	0	0	0	0	0	0	1505	116	4	5		5	BRAF	7	140507908	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3177645	140507908	18630755	470	61673											
MGAM	8972	broad.mit.edu	37	chr7	141721342	141721342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatattgggaagctctgaCaagtttttattttggctttc	11	5	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141721342	A	A	141721342	1	1	55	0	1	0	0	0	0	0	0	0	9634	493	17	3		3	MGAM	7	141721342	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1213434	141721342	17417321	471	61674											
MGAM	8972	broad.mit.edu	37	chr7	141734424	141734424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatccccttggctgagaCaagctaagatcccacattga	8	12	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141734424	A	A	141734424	1	1	55	0	1	0	0	0	0	0	0	0	9634	493	17	3		3	MGAM	7	141734424	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	13082	141734424	17404239	472	61675											
TRPV6	55503	broad.mit.edu	37	chr7	142572639	142572639	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgagggaagggatgggagtGagaggaaggaaactcacatg	18	3	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142572639	C	C	142572639	1	2	55	0	1	0	0	0	0	0	0	0	16725	1305	45	4		4	TRPV6	7	142572639	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	838215	142572639	16566024	473	61676											
KEL	3792	broad.mit.edu	37	chr7	142651423	142651423	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctcccagcaaggttcCcagctgattcaggtaagtca	9	13	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142651423	A	A	142651423	4	1	55	1	0	0	0	0	0	1	0	0	8212	632	22	2	1474	2	KEL	7	142651423	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	78784	142651423	16487240	474	61677											
CASP2	835	broad.mit.edu	37	chr7	142991376	142991376	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgtctgccttcaggtgAagccttgcactcctgaattt	9	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142991376	G	G	142991376	3	3	55	1	0	0	0	0	1	0	0	0	2697	247	9	5	547	5	CASP2	7	142991376	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	339953	142991376	16147287	475	61678											
TAS2R41	259287	broad.mit.edu	37	chr7	143175707	143175707	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttatgctctgtcctttCtgtccctgatcattgatgcc	6	12	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143175707	G	G	143175707	3	3	55	1	0	0	0	0	1	0	0	0	15698	912	32	4	744	4	TAS2R41	7	143175707	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	184331	143175707	15962956	476	61679											
TPK1	27010	broad.mit.edu	37	chr7	144245791	144245791	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcgtctacaaccctcacAcggcttatcatacttaatcc	5	14	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144245791	G	G	144245791	1	3	55	0	1	0	0	0	0	0	0	0	16528	174	6	5		5	TPK1	7	144245791	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1070084	144245791	14892872	477	61680											
CUL1	8454	broad.mit.edu	37	chr7	148494875	148494875	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaatgcattttcccttTaacttcctctttttctcttt	2	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148494875	C	C	148494875	1	2	55	0	1	0	0	0	0	0	0	0	4087	1769	61	5		5	CUL1	7	148494875	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4249084	148494875	10643788	478	61681											
AGAP3	116988	broad.mit.edu	37	chr7	150814462	150814462	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgctctgtcctagggggGcggtttaagaaggagattgt	17	7	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150814462	C	C	150814462	2	2	55	1	0	0	0	0	0	0	0	1	369	1190	42	4		4	AGAP3	7	150814462	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2319587	150814462	8324201	479	61682											
DPP6	1804	broad.mit.edu	37	chr7	153659755	153659755	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctgtcaagaagccaacaCattatttgctcctccaaatg	5	12	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153659755	G	G	153659755	1	3	55	0	1	0	0	0	0	0	0	0	4770	493	17	4		4	DPP6	7	153659755	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2845293	153659755	5478908	480	61683											
MYOM2	9172	broad.mit.edu	37	chr8	2046745	2046745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgccgccgtcaacctggCcggcatcggggagccctcag	13	16	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2046745	A	A	2046745	3	1	55	1	0	0	0	0	1	0	0	0	10186	739	26	3	2442	3	MYOM2	8	2046745	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08		2046745	144317277	481	61684											
CSMD1	64478	broad.mit.edu	37	chr8	2857579	2857579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggattgcactggtaaaccaCcgtgtctctgtaactgaagc	10	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2857579	A	A	2857579	3	1	55	1	0	0	0	0	1	0	0	0	3978	507	18	3	2662	3	CSMD1	8	2857579	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	810834	2857579	143506443	482	61685											
CSMD1	64478	broad.mit.edu	37	chr8	4236320	4236320	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattactgcccttgtaagacGtcaagggagctttttcccct	9	11	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4236320	C	C	4236320	1	2	55	0	1	0	0	0	0	0	0	0	3978	1160	40	4		4	CSMD1	8	4236320	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1378741	4236320	142127702	483	61686											
CLDN23	137075	broad.mit.edu	37	chr8	8560235	8560235	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgctggcaggacgagccCaacttcgtgctggcagggct	15	13	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8560235	A	A	8560235	2	1	55	1	0	0	0	0	0	0	0	1	3515	581	21	2		2	CLDN23	8	8560235	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4323915	8560235	137803787	484	61687											
FAM86B1	85002	broad.mit.edu	37	chr8	12040294	12040294	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcttcttggagtctcaGggcaaagcctttcgagcagc	12	12	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12040294	T	T	12040294	1	4	55	0	1	0	0	0	0	0	0	0	5697	1015	35	2		2	FAM86B1	8	12040294	3'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3480059	12040294	134323728	485	61688											
TUSC3	7991	broad.mit.edu	37	chr8	15480671	15480671	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatgaatggtgataaattccGaaaatttataaaggcaccac	7	6	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15480671	C	C	15480671	3	2	55	1	0	0	0	0	1	0	0	0	16904	1058	37	4	227	4	TUSC3	8	15480671	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3440377	15480671	130883351	486	61689											
SLC7A2	6542	broad.mit.edu	37	chr8	17412654	17412654	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttaattcgcatgcatggActtataaagagggtctgcat	9	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17412654	T	T	17412654	1	4	55	0	1	0	0	0	0	0	0	0	14811	290	10	5		5	SLC7A2	8	17412654	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1931983	17412654	128951368	487	61690											
ADAM28	10863	broad.mit.edu	37	chr8	24187507	24187507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catacctttaggaccacagcGataatcttcttagagttgca	7	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24187507	T	T	24187507	3	4	55	1	0	0	0	0	1	0	0	0	246	1058	37	3	1024	3	ADAM28	8	24187507	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6774853	24187507	122176515	488	61691											
KIF13B	23303	broad.mit.edu	37	chr8	28981473	28981473	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttcttaactgatgtggctAcaaagggagaataattaatt	10	4	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28981473	G	G	28981473	1	3	55	0	1	0	0	0	0	0	0	0	8345	406	14	5		5	KIF13B	8	28981473	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4793966	28981473	117382549	489	61692											
ADAM2	2515	broad.mit.edu	37	chr8	39626920	39626920	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttagtaccaacctgttcagtCccacagtcacactcctctcc	4	17	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39626920	A	A	39626920	2	1	55	1	0	0	0	0	0	0	0	1	241	842	30	3		3	ADAM2	8	39626920	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	10645447	39626920	106737102	490	61693											
ANK1	286	broad.mit.edu	37	chr8	41591607	41591607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaaagagcagagaggcGggaagggcatggttagtcaa	16	5	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41591607	T	T	41591607	1	4	55	0	1	0	0	0	0	0	0	0	620	1131	39	1		1	ANK1	8	41591607	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1964687	41591607	104772415	491	61694											
ATP6V1H	51606	broad.mit.edu	37	chr8	54729955	54729955	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaattttaaaaaaagaAtccaatcaattcaaaattta	1	4	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54729955	G	G	54729955	1	3	55	0	1	0	0	0	0	0	0	0	1193	116	4	5		5	ATP6V1H	8	54729955	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	13138348	54729955	91634067	492	61695											
RP1	6101	broad.mit.edu	37	chr8	55609137	55609137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattcctacatgactcctgGcagcagaaacgtgacaaagt	8	10	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55609137	T	T	55609137	1	4	55	0	1	0	0	0	0	0	0	0	13643	1218	42	3		3	RP1	8	55609137	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	879182	55609137	90754885	493	61696											
XKR4	114786	broad.mit.edu	37	chr8	56216833	56216833	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtacccagtagtcattcagGagcaggtttcagtttccatg	10	9	3	0	rs144826008	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56216833	A	A	56216833	1	1	55	0	1	0	0	0	0	0	0	0	17560	1189	41	4		4	XKR4	8	56216833	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	607696	56216833	90147189	494	61697											
XKR4	114786	broad.mit.edu	37	chr8	56305984	56305984	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaggaaggaaggaaggAaggaaggaaggaaggaagga	20	0	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56305984	G	G	56305984	1	3	55	0	1	0	0	0	0	0	0	0	17560	261	9	5		5	XKR4	8	56305984	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	89151	56305984	90058038	495	61698											
CA8	767	broad.mit.edu	37	chr8	61144930	61144930	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagtggagttccagtggatCagatggagctgagtgagtgg	18	4	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61144930	T	T	61144930	2	4	55	1	0	0	0	0	0	0	0	1	2549	813	29	4		4	CA8	8	61144930	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4838946	61144930	85219092	496	61699											
CHD7	55636	broad.mit.edu	37	chr8	61750662	61750662	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctttccaagaaagaaataGaggatcttctacgaaaaggg	10	6	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61750662	T	T	61750662	4	4	55	1	0	0	0	0	0	1	0	0	3361	943	33	3	4451	3	CHD7	8	61750662	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	605732	61750662	84613360	497	61700											
PDE7A	5150	broad.mit.edu	37	chr8	66631608	66631608	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactgctcgactgttctcTctgcagtcccttccagctgg	8	16	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66631608	C	C	66631608	3	2	55	1	0	0	0	0	1	0	0	0	11745	1559	54	5	86	5	PDE7A	8	66631608	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4880946	66631608	79732414	498	61701											
EYA1	2138	broad.mit.edu	37	chr8	72127698	72127698	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaggactttcgccaatgcTgggatgagctgagtagttgt	14	7	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72127698	G	G	72127698	2	3	55	1	0	0	0	0	0	0	0	1	5371	1567	55	5		5	EYA1	8	72127698	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5496090	72127698	74236324	499	61702											
FABP5	2171	broad.mit.edu	37	chr8	82195599	82195599	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatgacttaacattctacAggagtgggaatagctttgcg	10	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82195599	G	G	82195599	5	3	55	1	0	0	0	0	0	0	1	0	5406	202	7	5	84	5	FABP5	8	82195599	Splice_Site	SNP	A	TCGA-17-Z023-01A-01W-0746-08	10067901	82195599	64168423	500	61703											
CNGB3	54714	broad.mit.edu	37	chr8	87683091	87683091	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcagggtctgcttttgggAgatccaaactaaaacatctg	9	9	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87683091	G	G	87683091	1	3	55	0	1	0	0	0	0	0	0	0	3633	319	11	5		5	CNGB3	8	87683091	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	5487492	87683091	58680931	501	61704											
DCAF4L2	138009	broad.mit.edu	37	chr8	88886189	88886189	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcgagcagtcgcggtcttTtgctctccatttcgttcggc	10	14	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88886189	C	C	88886189	3	2	55	1	0	0	0	0	1	0	0	0	4305	1841	64	5	1180	5	DCAF4L2	8	88886189	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1203098	88886189	57477833	502	61705											
ESRP1	54845	broad.mit.edu	37	chr8	95686684	95686684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaactttgtgttaatggGgggcactttaaatcgaaatg	12	4	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95686684	T	T	95686684	3	4	55	1	0	0	0	0	1	0	0	0	5300	1232	43	2	1647	2	ESRP1	8	95686684	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6800495	95686684	50677338	503	61706											
PKHD1L1	93035	broad.mit.edu	37	chr8	110437294	110437294	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtttaatcattttatcaAtatttattttggaaattaga	4	2	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110437294	G	G	110437294	1	3	55	0	1	0	0	0	0	0	0	0	12067	116	4	5		5	PKHD1L1	8	110437294	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	14750610	110437294	35926728	504	61707											
PKHD1L1	93035	broad.mit.edu	37	chr8	110476711	110476711	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatttgtacagcaaagtacCagtcttctgaatgatgatgt	9	6	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110476711	T	T	110476711	2	4	55	1	0	0	0	0	0	0	0	1	12067	581	21	4		4	PKHD1L1	8	110476711	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	39417	110476711	35887311	505	61708											
CSMD3	114788	broad.mit.edu	37	chr8	113568983	113568983	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaatgaaaatctatgacaGtatcctaccaatacaggaag	6	8	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113568983	A	A	113568983	1	1	55	0	1	0	0	0	0	0	0	0	3980	1044	36	4		4	CSMD3	8	113568983	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3092272	113568983	32795039	506	61709											
CSMD3	114788	broad.mit.edu	37	chr8	113648936	113648936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagttgaaataattaatGtgaaataaatgcagaaattc	6	2	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113648936	T	T	113648936	1	4	55	0	1	0	0	0	0	0	0	0	3980	1392	48	3		3	CSMD3	8	113648936	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	79953	113648936	32715086	507	61710											
CSMD3	114788	broad.mit.edu	37	chr8	113871484	113871484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtccttgaagattagagcCacacgttttcactaaaagag	9	8	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113871484	A	A	113871484	3	1	55	1	0	0	0	0	1	0	0	0	3980	594	21	2	9722	2	CSMD3	8	113871484	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	222548	113871484	32492538	508	61711											
SLC30A8	169026	broad.mit.edu	37	chr8	118078204	118078204	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaactgggaaatttgccAcagatggatcccatggcccc	10	11	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118078204	T	T	118078204	1	4	55	0	1	0	0	0	0	0	0	0	14675	174	6	5		5	SLC30A8	8	118078204	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4206720	118078204	28285818	509	61712											
SLC30A8	169026	broad.mit.edu	37	chr8	118147586	118147586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggagtttcttgaaagaaCgtatcttgtgaatgataaag	10	4	2	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118147586	T	T	118147586	3	4	55	1	0	0	0	0	1	0	0	0	14675	536	19	4	22	4	SLC30A8	8	118147586	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	69382	118147586	28216436	510	61713											
RNF139	11236	broad.mit.edu	37	chr8	125498037	125498037	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaaacattcttacaaataCttcattcaaatgactttttc	4	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125498037	T	T	125498037	1	4	55	0	1	0	0	0	0	0	0	0	13553	580	20	4		4	RNF139	8	125498037	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7350451	125498037	20865985	511	61714											
NSMCE2	286053	broad.mit.edu	37	chr8	126213748	126213748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtatcaccagcggaggctGcagaatcacaaatattgcag	12	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126213748	T	T	126213748	1	4	55	0	1	0	0	0	0	0	0	0	10771	1334	46	3		3	NSMCE2	8	126213748	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	715711	126213748	20150274	512	61715											
ADCY8	114	broad.mit.edu	37	chr8	131912769	131912769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcaatccagttccaataGgcagctatcagtcttcatct	5	13	5	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131912769	T	T	131912769	1	4	55	0	1	0	0	0	0	0	0	0	300	1015	35	2		2	ADCY8	8	131912769	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5699021	131912769	14451253	513	61716											
ADCY8	114	broad.mit.edu	37	chr8	132051816	132051816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgctgccaggatctggGtggtcatggccacccaggtg	16	12	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132051816	T	T	132051816	3	4	55	1	0	0	0	0	1	0	0	0	300	1261	44	3	3063	3	ADCY8	8	132051816	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	139047	132051816	14312206	514	61717											
PHF20L1	51105	broad.mit.edu	37	chr8	133860991	133860994	+	3'UTR	DEL	TATT	-	-													tatttcctctcagatgttcaTatttcacatgttcaaaatga					rs10580863		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133860994	-	-	133860991	6	5	55	0	1	1	0	1	0	0	0	0	11927	1421	49	0		0	PHF20L1	8	133860991	3'UTR	DEL	TATT	TCGA-17-Z023-01A-01W-0746-08	1809175	133860991	12503031	515	61718											
FAM135B	51059	broad.mit.edu	37	chr8	139269024	139269024	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaagaaacaaagtccaAgggatttcaggagtcaaatc	9	7	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139269024	T	T	139269024	1	4	55	0	1	0	0	0	0	0	0	0	5495	87	3	5		5	FAM135B	8	139269024	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	5408033	139269024	7094998	516	61719											
FAM135B	51059	broad.mit.edu	37	chr8	139424087	139424087	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccatcagtggtggactgaaTaaagaaaatgtacatatgtg	10	6	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139424087	A	A	139424087	1	1	55	0	1	0	0	0	0	0	0	0	5495	1421	49	5		5	FAM135B	8	139424087	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	155063	139424087	6939935	517	61720											
COL22A1	169044	broad.mit.edu	37	chr8	139868025	139868025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattccttttctggaggagCctccaccccacacccaggca	7	17	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139868025	A	A	139868025	1	1	55	0	1	0	0	0	0	0	0	0	3713	754	26	3		3	COL22A1	8	139868025	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	443938	139868025	6495997	518	61721											
TRAPPC9	83696	broad.mit.edu	37	chr8	141362713	141362713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatccccggttacactggcCgccgctccctgcctgaagaa	10	16	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141362713	A	A	141362713	1	1	55	0	1	0	0	0	0	0	0	0	16589	667	23	1		1	TRAPPC9	8	141362713	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1494688	141362713	5001309	519	61722											
GLIS3	169792	broad.mit.edu	37	chr9	4117825	4117828	+	Frame_Shift_Del	DEL	GCGG	-	-													atgtggatcagcagtttataGcgggcgttgaagggcttgta					rs147451000	byFrequency	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4117828	-	-	4117825	7	5	55	1	0	1	0	1	0	0	0	0	6511	958	34	0	1171	0	GLIS3	9	4117825	Frame_Shift_Del	DEL	GCGG	TCGA-17-Z023-01A-01W-0746-08		4117825	137095606	520	61723											
UHRF2	115426	broad.mit.edu	37	chr9	6433943	6433943	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggtggatgccagagatgtCggccttggtgcttggtttga	16	6	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6433943	T	T	6433943	2	4	55	1	0	0	0	0	0	0	0	1	17096	871	31	4		4	UHRF2	9	6433943	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2316118	6433943	134779488	521	61724											
PTPRD	5789	broad.mit.edu	37	chr9	8500764	8500764	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacataccatcttcattGgttcgaatcaacacggacaa	7	11	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8500764	T	T	8500764	2	4	55	1	0	0	0	0	0	0	0	1	12907	1335	47	2		2	PTPRD	9	8500764	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2066821	8500764	132712667	522	61725											
PTPRD	5789	broad.mit.edu	37	chr9	8565348	8565348	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctatagactgctttcatgtGagaaccatatttggttgctt	8	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8565348	C	C	8565348	1	2	55	0	1	0	0	0	0	0	0	0	12907	1305	45	4		4	PTPRD	9	8565348	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	64584	8565348	132648083	523	61726											
C9orf150	286343	broad.mit.edu	37	chr9	12775758	12775758	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcagagacatcgagctgaAgctggggcgcaaagtacccg	13	12	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12775758	T	T	12775758	3	4	55	1	0	0	0	0	1	0	0	0	2488	72	3	5	46	5	C9orf150	9	12775758	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4210410	12775758	128437673	524	61727											
CDKN2A	1029	broad.mit.edu	37	chr9	21971024	21971024	+	Frame_Shift_Del	DEL	G	-	-													agccaggtccacgggcagacGgccccaggcatcgcgcacgt							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21971024	-	-	21971024	7	5	55	1	0	1	0	1	0	0	0	0	3191	1116	39	0	144	0	CDKN2A	9	21971024	Frame_Shift_Del	DEL	G	TCGA-17-Z023-01A-01W-0746-08	9195266	21971024	119242407	525	61728											
ELAVL2	1993	broad.mit.edu	37	chr9	23732365	23732365	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatattttgggaccacaatCagaattttggataatcactg	7	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23732365	A	A	23732365	1	1	55	0	1	0	0	0	0	0	0	0	5092	841	29	3		3	ELAVL2	9	23732365	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1761341	23732365	117481066	526	61729											
CREB3	10488	broad.mit.edu	37	chr9	35733175	35733175	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttgcggggaggacagggTtcatgggcctggctattcat	16	7	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35733175	C	C	35733175	1	2	55	0	1	0	0	0	0	0	0	0	3887	1740	60	5		5	CREB3	9	35733175	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	12000810	35733175	105480256	527	61730											
RGP1	9827	broad.mit.edu	37	chr9	35751037	35751037	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaagggcgatgccaaagcAgaaattgtcttagagggctt	15	6	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35751037	T	T	35751037	1	4	55	0	1	0	0	0	0	0	0	0	13392	203	7	5		5	RGP1	9	35751037	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	17862	35751037	105462394	528	61731											
SPAG8	26206	broad.mit.edu	37	chr9	35811203	35811203	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcccagttgtagaggagGcactggccccgcggcaaagt	13	13	0	1	rs150971266		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35811203	C	C	35811203	3	2	55	1	0	0	0	0	1	0	0	0	15100	1195	42	4	892	4	SPAG8	9	35811203	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	60166	35811203	105402228	529	61732											
PGM5	5239	broad.mit.edu	37	chr9	71006455	71006456	+	Missense_Mutation	DNP	GG	AT	AT													tgtatctatttttagttatgGgaccttatgtgagaaaagtt							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	71006456	AT	AT	71006455	3	1	55	1	0	0	0	0	1	0	0	0	11896	1233	43	4	721	4	PGM5	9	71006455	Missense_Mutation	DNP	GG	TCGA-17-Z023-01A-01W-0746-08	35195252	71006455	70206976	530	61733											
FAM189A2	9413	broad.mit.edu	37	chr9	71992730	71992730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagactgaagtgtctccagAactcaccacatgagatctca	8	11	3	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71992730	T	T	71992730	1	4	55	0	1	0	0	0	0	0	0	0	5563	261	9	5		5	FAM189A2	9	71992730	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	986275	71992730	69220701	531	61734											
OSTF1	26578	broad.mit.edu	37	chr9	77755598	77755598	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgccaaattatactgcaTgagaaagtttattgttttga	8	4	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77755598	C	C	77755598	1	2	55	0	1	0	0	0	0	0	0	0	11391	1479	51	5		5	OSTF1	9	77755598	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5762868	77755598	63457833	532	61735											
PRUNE2	158471	broad.mit.edu	37	chr9	79323715	79323715	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtttccggctcggaaccttCagccatgtatccttctgttt	9	12	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79323715	A	A	79323715	4	1	55	1	0	0	0	0	0	1	0	0	12747	835	29	3	5839	3	PRUNE2	9	79323715	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1568117	79323715	61889716	533	61736											
TLE4	7091	broad.mit.edu	37	chr9	82219962	82219962	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaggaggggagggagagaGaagagaaataaaatgtaaag	17	0	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82219962	A	A	82219962	1	1	55	0	1	0	0	0	0	0	0	0	16064	957	33	4		4	TLE4	9	82219962	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2896247	82219962	58993469	534	61737											
KIF27	55582	broad.mit.edu	37	chr9	86498781	86498781	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgaaactctttctgtaattTtaccttcattgcaacatcag	4	10	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86498781	G	G	86498781	3	3	55	1	0	0	0	0	1	0	0	0	8366	1850	64	5	1849	5	KIF27	9	86498781	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4278819	86498781	54714650	535	61738											
C9orf79	286234	broad.mit.edu	37	chr9	90500350	90500350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggctgccaccacctgGggcctctccacctactcaca	10	17	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90500350	T	T	90500350	3	4	55	1	0	0	0	0	1	0	0	0	2523	1241	43	2	962	2	C9orf79	9	90500350	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	4001569	90500350	50713081	536	61739											
C9orf79	286234	broad.mit.edu	37	chr9	90501374	90501374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacctgctacagcctgatGgggaattcccagggaggccc	15	12	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90501374	T	T	90501374	3	4	55	1	0	0	0	0	1	0	0	0	2523	1348	47	2	1986	2	C9orf79	9	90501374	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1024	90501374	50712057	537	61740											
FAM75C1	441452	broad.mit.edu	37	chr9	90538204	90538217	+	Frame_Shift_Del	DEL	CAGAGTCGTCCCAA	-	-													aacaagccactctcaagaacCagagtcgtcccaacagagac							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90538217	-	-	90538204	7	5	55	1	0	1	0	1	0	0	0	0	5676	595	21	0	3396	0	FAM75C1	9	90538204	Frame_Shift_Del	DEL	CAGAGTCGTCCCAA	TCGA-17-Z023-01A-01W-0746-08	36830	90538204	50675227	538	61741											
CDK20	23552	broad.mit.edu	37	chr9	90588911	90588911	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaagccgtcctccaaccGccttagggccaccttcttga	10	15	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90588911	T	T	90588911	2	4	55	1	0	0	0	0	0	0	0	1	3167	1086	38	3		3	CDK20	9	90588911	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	50707	90588911	50624520	539	61742											
COL15A1	1306	broad.mit.edu	37	chr9	101806955	101806955	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgcaggcacatatctgCcccagctttgcatctttgtt	7	14	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101806955	T	T	101806955	1	4	55	0	1	0	0	0	0	0	0	0	3704	754	26	4		4	COL15A1	9	101806955	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	11218044	101806955	39406476	540	61743											
ZNF462	58499	broad.mit.edu	37	chr9	109690045	109690045	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgcactgaggaagcatatCaagaaagaccaccccgccct	8	13	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109690045	T	T	109690045	2	4	55	1	0	0	0	0	0	0	0	1	18053	816	29	4		4	ZNF462	9	109690045	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7883090	109690045	31523386	541	61744											
ZNF462	58499	broad.mit.edu	37	chr9	109704723	109704723	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgacatgtttcaccagcacAcgaatcctctatatattcat	4	11	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109704723	T	T	109704723	1	4	55	0	1	0	0	0	0	0	0	0	18053	174	6	5		5	ZNF462	9	109704723	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	14678	109704723	31508708	542	61745											
RAD23B	5887	broad.mit.edu	37	chr9	110062508	110062508	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaattaatttatgcaggtatGaattaaatattaaaattaac	4	2	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110062508	A	A	110062508	1	1	55	0	1	0	0	0	0	0	0	0	13091	1305	45	4		4	RAD23B	9	110062508	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	357785	110062508	31150923	543	61746											
EPB41L4B	54566	broad.mit.edu	37	chr9	112013872	112013872	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgacagataatggccatgcGagacttctaccatcacagag	9	10	2	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112013872	C	C	112013872	1	2	55	0	1	0	0	0	0	0	0	0	5198	1073	37	4		4	EPB41L4B	9	112013872	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1951364	112013872	29199559	544	61747											
TXN	7295	broad.mit.edu	37	chr9	113007154	113007154	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtagcaaagggagaggatTaaatacaagactgcgagtac	12	5	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113007154	G	G	113007154	1	3	55	0	1	0	0	0	0	0	0	0	16916	1769	61	5		5	TXN	9	113007154	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	993282	113007154	28206277	545	61748											
SVEP1	79987	broad.mit.edu	37	chr9	113231319	113231319	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcatcttgataggatcCgatccggcagctttcacagg	9	11	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113231319	A	A	113231319	4	1	55	1	0	0	0	0	0	1	0	0	15538	661	23	1	7782	1	SVEP1	9	113231319	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	224165	113231319	27982112	546	61749											
PAPPA	5069	broad.mit.edu	37	chr9	119144874	119144874	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaacccttgtcctaactcTgccagcactgtccacacgct	6	17	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119144874	G	G	119144874	1	3	55	0	1	0	0	0	0	0	0	0	11526	1595	55	5		5	PAPPA	9	119144874	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5913555	119144874	22068557	547	61750											
ASTN2	23245	broad.mit.edu	37	chr9	119903436	119903436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagagaggttagctctgGgtgtagggagcataggtctg	17	6	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119903436	T	T	119903436	1	4	55	0	1	0	0	0	0	0	0	0	1069	1247	43	2		2	ASTN2	9	119903436	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	758562	119903436	21309995	548	61751											
DBC1	1620	broad.mit.edu	37	chr9	122022651	122022651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacagagaccagaaggccCacaaagtctaaaatatttac	7	10	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122022651	A	A	122022651	1	1	55	0	1	0	0	0	0	0	0	0	4280	609	21	2		2	DBC1	9	122022651	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2119215	122022651	19190780	549	61752											
TTLL11	158135	broad.mit.edu	37	chr9	124657278	124657278	+	Intron	DEL	A	-	-													aagaaaagtcagcgggggtcAggggaggtgggaccaacgac					rs59825468		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124657278	-	-	124657278	6	5	55	0	1	1	0	1	0	0	0	0	16850	203	7	0		0	TTLL11	9	124657278	Intron	DEL	A	TCGA-17-Z023-01A-01W-0746-08	2634627	124657278	16556153	550	61753											
OR1N1	138883	broad.mit.edu	37	chr9	125289495	125289495	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacatacacaggaaaattccGaagagggactgctgttgctc	10	9	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125289495	A	A	125289495	2	1	55	1	0	0	0	0	0	0	0	1	11063	1049	37	4		4	OR1N1	9	125289495	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	632217	125289495	15923936	551	61754											
PHYHD1	254295	broad.mit.edu	37	chr9	131703587	131703587	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagggaggctgcagatgcCtgagctttcagggaagggaa	17	7	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131703587	G	G	131703587	1	3	55	0	1	0	0	0	0	0	0	0	11960	696	24	4		4	PHYHD1	9	131703587	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	6414092	131703587	9509844	552	61755											
LAMC3	10319	broad.mit.edu	37	chr9	133914470	133914470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacatccccagcctccgaCcctctccctttcctggcctc	4	23	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133914470	A	A	133914470	1	1	55	0	1	0	0	0	0	0	0	0	8688	522	18	3		3	LAMC3	9	133914470	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2210883	133914470	7298961	553	61756											
BAT2L1	84726	broad.mit.edu	37	chr9	134319466	134319466	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttgtgacaagactcccttCaaaagcccacttccaggcaa	6	15	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134319466	G	G	134319466	1	3	55	0	1	0	0	0	0	0	0	0	1325	841	29	4		4	BAT2L1	9	134319466	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	404996	134319466	6893965	554	61757											
LCN1	3933	broad.mit.edu	37	chr9	138415883	138415883	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatgcctccacctgccctCcctcctccctcggcctcctg	5	25	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138415883	A	A	138415883	1	1	55	0	1	0	0	0	0	0	0	0	8752	870	30	3		3	LCN1	9	138415883	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4096417	138415883	2797548	555	61758											
CACNA1B	774	broad.mit.edu	37	chr9	140848421	140848421	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggggaggcaggagagcagCctgctcagggcttccttctg	16	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140848421	G	G	140848421	1	3	55	0	1	0	0	0	0	0	0	0	2565	754	26	4		4	CACNA1B	9	140848421	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2432538	140848421	365010	556	61759											
CACNA1B	774	broad.mit.edu	37	chr9	140852090	140852090	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaagagcagaaatgacctGatccacgcagaggagggaga	14	7	0	7			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140852090	A	A	140852090	2	1	55	1	0	0	0	0	0	0	0	1	2565	1277	45	4		4	CACNA1B	9	140852090	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3669	140852090	361341	557	61760											
CACNA1B	774	broad.mit.edu	37	chr9	140865867	140865867	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgcgccagcctcaagagcGggaagacagagagctcgtca	13	14	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140865867	A	A	140865867	3	1	55	1	0	0	0	0	1	0	0	0	2565	1116	39	4	1408	4	CACNA1B	9	140865867	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	13777	140865867	347564	558	61761											
DIP2C	22982	broad.mit.edu	37	chr10	349042	349042	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctaagacatcaccgcacgCggctgtagacttcataaaca	8	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	349042	T	T	349042	1	4	55	0	1	0	0	0	0	0	0	0	4569	783	27	4		4	DIP2C	10	349042	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08		349042	135185705	559	61762											
DIP2C	22982	broad.mit.edu	37	chr10	463824	463824	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggcctccctgtccacctGcacctgtcagggctcggata	10	16	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	463824	A	A	463824	1	1	55	0	1	0	0	0	0	0	0	0	4569	1334	46	4		4	DIP2C	10	463824	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	114782	463824	135070923	560	61763											
ADARB2	105	broad.mit.edu	37	chr10	1405977	1405977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagtttgcacaagtggCccccattcccctcctccagc	8	18	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1405977	A	A	1405977	3	1	55	1	0	0	0	0	1	0	0	0	283	739	26	3	1928	3	ADARB2	10	1405977	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	942153	1405977	134128770	561	61764											
PRKCQ	5588	broad.mit.edu	37	chr10	6547576	6547577	+	Intron	INS	-	CCTT	CCTT													tctcaccctctctctctctcINSccttccttccttccttccct					rs143591503	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CCTT	6547577	CCTT	CCTT	6547576	6	5	55	0	1	1	1	0	0	0	0	0	12621	870	30	0		0	PRKCQ	10	6547576	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	5141599	6547576	128987171	562	61765											
SFMBT2	57713	broad.mit.edu	37	chr10	7371330	7371330	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttctcacgagccgagcttaGgtactggcgtccagtcctca	11	13	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7371330	C	C	7371330	1	2	55	0	1	0	0	0	0	0	0	0	14271	1015	35	4		4	SFMBT2	10	7371330	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	823754	7371330	128163417	563	61766											
DHTKD1	55526	broad.mit.edu	37	chr10	12133734	12133734	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagccgacatggaattccTagggaaacctctggtgcaca	11	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12133734	A	A	12133734	1	1	55	0	1	0	0	0	0	0	0	0	4540	1537	53	5		5	DHTKD1	10	12133734	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4762404	12133734	123401013	564	61767											
FRMD4A	55691	broad.mit.edu	37	chr10	13779903	13779904	+	Missense_Mutation	DNP	CC	AA	AA													gatccctttgtagctcaggcCcagccaccatggtatgccct							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	13779904	AA	AA	13779903	3	1	55	1	0	0	0	0	1	0	0	0	6111	623	22	2	2471	2	FRMD4A	10	13779903	Missense_Mutation	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	1646169	13779903	121754844	565	61768											
DCLRE1C	64421	broad.mit.edu	37	chr10	14964938	14964938	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgtcctagccaagagcCaccaagggggacaccaagtc	11	12	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14964938	T	T	14964938	1	4	55	0	1	0	0	0	0	0	0	0	4329	609	21	4		4	DCLRE1C	10	14964938	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1185035	14964938	120569809	566	61769											
CUBN	8029	broad.mit.edu	37	chr10	16984783	16984784	+	Intron	INS	-	AAGGG	AAGGG													aggggaaagggtaaaggaaaINSaagggaagggaagggaaggg					rs144169849	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAGGG	16984784	AAGGG	AAGGG	16984783	6	5	55	0	1	1	1	0	0	0	0	0	4084	29	1	0		0	CUBN	10	16984783	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	2019845	16984783	118549964	567	61770											
CUBN	8029	broad.mit.edu	37	chr10	17157575	17157575	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcacactggggtccgtaCgtctcaggtgggcagtgaca	15	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17157575	A	A	17157575	2	1	55	1	0	0	0	0	0	0	0	1	4084	523	19	3		3	CUBN	10	17157575	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	172792	17157575	118377172	568	61771											
VIM	7431	broad.mit.edu	37	chr10	17277401	17277401	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagagcaggtagggaactcaGacttggatgcgtgaactaat	14	6	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17277401	C	C	17277401	1	2	55	0	1	0	0	0	0	0	0	0	17293	957	33	4		4	VIM	10	17277401	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	119826	17277401	118257346	569	61772											
KIAA1217	56243	broad.mit.edu	37	chr10	24037816	24037816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccaagtctagggtaatgTcagtgtcttaaaaaatgatc	8	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24037816	C	C	24037816	1	2	55	0	1	0	0	0	0	0	0	0	8286	1682	58	5		5	KIAA1217	10	24037816	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	6760415	24037816	111496931	570	61773											
GPR158	57512	broad.mit.edu	37	chr10	25510201	25510201	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaagaaaatctatgtaGgtctcagtgctgccaaatga	11	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25510201	C	C	25510201	1	2	55	0	1	0	0	0	0	0	0	0	6728	1015	35	4		4	GPR158	10	25510201	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1472385	25510201	110024546	571	61774											
ZNF248	57209	broad.mit.edu	37	chr10	38120477	38120477	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatttctgacattctttggCtttctctgatctcctttttt	4	9	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38120477	A	A	38120477	1	1	55	0	1	0	0	0	0	0	0	0	17919	812	28	3		3	ZNF248	10	38120477	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	12610276	38120477	97414270	572	61775											
ZNF248	57209	broad.mit.edu	37	chr10	38121619	38121619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcctcatcatggaagcCttgtccatttttactatact	6	11	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38121619	A	A	38121619	3	1	55	1	0	0	0	0	1	0	0	0	17919	681	24	2	1079	2	ZNF248	10	38121619	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1142	38121619	97413128	573	61776											
CXCL12	6387	broad.mit.edu	37	chr10	44873762	44873762	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgatgatgattgtgatgatCatgaaggaactaactgcttg	11	4	1	6			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44873762	T	T	44873762	1	4	55	0	1	0	0	0	0	0	0	0	4113	841	29	4		4	CXCL12	10	44873762	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	6752143	44873762	90660985	574	61777											
GDF10	2662	broad.mit.edu	37	chr10	48426496	48426496	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgtctgcagctgcacCacaagtcctggttgcagaag	11	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48426496	A	A	48426496	1	1	55	0	1	0	0	0	0	0	0	0	6375	609	21	2		2	GDF10	10	48426496	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3552734	48426496	87108251	575	61778											
C10orf72	196740	broad.mit.edu	37	chr10	50255129	50255129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttagcttgcagttcctccCagaacacttagtggccacac	8	13	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50255129	A	A	50255129	1	1	55	0	1	0	0	0	0	0	0	0	1626	609	21	2		2	C10orf72	10	50255129	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1828633	50255129	85279618	576	61779											
AGAP6	414189	broad.mit.edu	37	chr10	51768441	51768441	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagccactacccaattttTgaagccattcctcctcctgt	5	15	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51768441	G	G	51768441	1	3	55	0	1	0	0	0	0	0	0	0	372	1827	63	5		5	AGAP6	10	51768441	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1513312	51768441	83766306	577	61780											
PCDH15	65217	broad.mit.edu	37	chr10	55944844	55944844	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagttccatacaaacataCatacatacattcatacatac	1	11	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55944844	T	T	55944844	1	4	55	0	1	0	0	0	0	0	0	0	11605	493	17	4		4	PCDH15	10	55944844	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4176403	55944844	79589903	578	61781											
ZNF365	22891	broad.mit.edu	37	chr10	64429835	64429835	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcatgattaaaataatctaGattagaagtgtgctgcttta	8	4	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64429835	C	C	64429835	1	2	55	0	1	0	0	0	0	0	0	0	17995	957	33	4		4	ZNF365	10	64429835	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8484991	64429835	71104912	579	61782											
PLA2G12B	84647	broad.mit.edu	37	chr10	74695503	74695503	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatcacaggctgcttgaaAaagatgaagagggacagaaa	13	5	1	5			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74695503	C	C	74695503	1	2	55	0	1	0	0	0	0	0	0	0	12086	29	1	5		5	PLA2G12B	10	74695503	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	10265668	74695503	60839244	580	61783											
PLA2G12B	84647	broad.mit.edu	37	chr10	74714335	74714335	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaagcttccccggaggtgccGaaggccccagtctgaatagg	13	12	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74714335	C	C	74714335	3	2	55	1	0	0	0	0	1	0	0	0	12086	1057	37	4	494	4	PLA2G12B	10	74714335	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	18832	74714335	60820412	581	61784											
KCNMA1	3778	broad.mit.edu	37	chr10	78647067	78647067	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttctgtttgtcccgggacTccctggacttgggccggttc	12	13	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78647067	A	A	78647067	3	1	55	1	0	0	0	0	1	0	0	0	8143	1551	54	5	75	5	KCNMA1	10	78647067	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3932732	78647067	56887680	582	61785											
KCNMA1	3778	broad.mit.edu	37	chr10	78704396	78704396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagatgcccctttgaaagCcatcatggtgaccgcaggtt	11	11	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78704396	A	A	78704396	1	1	55	0	1	0	0	0	0	0	0	0	8143	754	26	3		3	KCNMA1	10	78704396	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	57329	78704396	56830351	583	61786											
KCNMA1	3778	broad.mit.edu	37	chr10	78785236	78785236	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaacgacaagaaaagAatttaaaatcaaacaatttg	5	6	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78785236	T	T	78785236	1	4	55	0	1	0	0	0	0	0	0	0	8143	261	9	5		5	KCNMA1	10	78785236	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	80840	78785236	56749511	584	61787											
GRID1	2894	broad.mit.edu	37	chr10	87721371	87721371	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccctccttctttcattcctTccttttctgcctttcatctg	2	16	5	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87721371	A	A	87721371	1	1	55	0	1	0	0	0	0	0	0	0	6837	1798	62	5		5	GRID1	10	87721371	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	8936135	87721371	47813376	585	61788											
LIPN	643418	broad.mit.edu	37	chr10	90537933	90537933	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaaccactttgattttgtCtggggcctcgatgcccctca	10	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90537933	T	T	90537933	2	4	55	1	0	0	0	0	0	0	0	1	8902	900	32	4		4	LIPN	10	90537933	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2816562	90537933	44996814	586	61789											
EXOC6	54536	broad.mit.edu	37	chr10	94679738	94679738	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaaatggtttaattttcaGatcttaactgttcaggatct	6	5	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94679738	T	T	94679738	5	4	55	1	0	0	0	0	0	0	1	0	5350	956	33	3	939	3	EXOC6	10	94679738	Splice_Site	SNP	G	TCGA-17-Z023-01A-01W-0746-08	4141805	94679738	40855009	587	61790											
SLIT1	6585	broad.mit.edu	37	chr10	98761095	98761095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccggacagggtcccccCggcactcggactctggatgg	14	15	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98761095	A	A	98761095	3	1	55	1	0	0	0	0	1	0	0	0	14853	652	23	1	229	1	SLIT1	10	98761095	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4081357	98761095	36773652	588	61791											
FAM178A	55719	broad.mit.edu	37	chr10	102684599	102684599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaggttacaacctagacaGtgatgaggaagaggaaacat	11	5	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102684599	T	T	102684599	3	4	55	1	0	0	0	0	1	0	0	0	5548	1029	36	3	1859	3	FAM178A	10	102684599	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3923504	102684599	32850148	589	61792											
SORCS1	114815	broad.mit.edu	37	chr10	108357110	108357110	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggacatggacactgaccCgctgttaagtgagcagcatg	13	11	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108357110	A	A	108357110	2	1	55	1	0	0	0	0	0	0	0	1	15044	666	23	1		1	SORCS1	10	108357110	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5672511	108357110	27177637	590	61793											
NRAP	4892	broad.mit.edu	37	chr10	115389428	115389428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtattcatgcagtttcttCctgtagtccaggtcactggc	10	10	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115389428	A	A	115389428	3	1	55	1	0	0	0	0	1	0	0	0	10733	854	30	3	3329	3	NRAP	10	115389428	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7032318	115389428	20145319	591	61794											
TDRD1	56165	broad.mit.edu	37	chr10	115973390	115973390	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgcctgttctggagttcaGatggttctataaataaatag	9	5	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115973390	T	T	115973390	1	4	55	0	1	0	0	0	0	0	0	0	15852	957	33	3		3	TDRD1	10	115973390	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	583962	115973390	19561357	592	61795											
DOCK1	1793	broad.mit.edu	37	chr10	129218009	129218009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaaggacctgattgcttGgcaggtaaagtgtccagcaa	12	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129218009	T	T	129218009	3	4	55	1	0	0	0	0	1	0	0	0	4724	1357	47	2	4891	2	DOCK1	10	129218009	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	13244619	129218009	6316738	593	61796											
DOCK1	1793	broad.mit.edu	37	chr10	129224177	129224177	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatcagaatccatggagacAaagtcacggaggcactgagg	14	8	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129224177	T	T	129224177	4	4	55	1	0	0	0	0	0	1	0	0	4724	131	5	5	4939	5	DOCK1	10	129224177	Nonsense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	6168	129224177	6310570	594	61797											
KNDC1	85442	broad.mit.edu	37	chr10	135025384	135025384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtcctttctcaggggaGgtcctccctggacaggcgga	16	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135025384	T	T	135025384	1	4	55	0	1	0	0	0	0	0	0	0	8497	1015	35	2		2	KNDC1	10	135025384	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5801207	135025384	509363	595	61798											
FRG2B	441581	broad.mit.edu	37	chr10	135439148	135439148	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactcaccagagcagtccCcacagaccctgatttccaga	8	15	1	5			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135439148	T	T	135439148	1	4	55	0	1	0	0	0	0	0	0	0	6107	638	22	4		4	FRG2B	10	135439148	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	413764	135439148	95599	596	61799											
MUC2	4583	broad.mit.edu	37	chr11	1101153	1101153	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaccctgccgacacctgcTgcaacattaccgtctgcagt	7	16	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1101153	A	A	1101153	3	1	55	1	0	0	0	0	1	0	0	0	10069	1580	55	5	7706	5	MUC2	11	1101153	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08		1101153	133905363	597	61800											
OR51D1	390038	broad.mit.edu	37	chr11	4661129	4661129	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctggggcctaccataCacttttggctggctttccca	10	14	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4661129	T	T	4661129	3	4	55	1	0	0	0	0	1	0	0	0	11187	478	17	4	111	4	OR51D1	11	4661129	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3559976	4661129	130345387	598	61801											
OR51F2	119694	broad.mit.edu	37	chr11	4843115	4843115	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcatgttgataagaaatgTtgccgtcatgttgccagtca	11	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4843115	C	C	4843115	3	2	55	1	0	0	0	0	1	0	0	0	11191	1725	60	5	502	5	OR51F2	11	4843115	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	181986	4843115	130163401	599	61802											
OR51A7	119687	broad.mit.edu	37	chr11	4928916	4928916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaagaattcttcattcatgGattcactgtcatggaatcct	6	9	6	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4928916	T	T	4928916	3	4	55	1	0	0	0	0	1	0	0	0	11182	1174	41	3	319	3	OR51A7	11	4928916	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	85801	4928916	130077600	600	61803											
MMP26	56547	broad.mit.edu	37	chr11	5009450	5009450	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgagggtttggcatgcagctCgtcatcttaagagttactat	11	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5009450	G	G	5009450	2	3	55	1	0	0	0	0	0	0	0	1	9757	871	31	4		4	MMP26	11	5009450	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	80534	5009450	129997066	601	61804											
FAM160A2	84067	broad.mit.edu	37	chr11	6238994	6238994	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagctcttcctcctccccttCccccacgttgttcctgtcct	4	21	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6238994	G	G	6238994	3	3	55	1	0	0	0	0	1	0	0	0	5515	864	30	4	1112	4	FAM160A2	11	6238994	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1229544	6238994	128767522	602	61805											
OR10A5	144124	broad.mit.edu	37	chr11	6865593	6865593	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtttctgactgctctggCcaaactgaaaagactctggt	11	9	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6865593	A	A	6865593	1	1	55	0	1	0	0	0	0	0	0	0	10987	754	26	3		3	OR10A5	11	6865593	5'Flank	SNP	C	TCGA-17-Z023-01A-01W-0746-08	626599	6865593	128140923	603	61806											
SYT9	143425	broad.mit.edu	37	chr11	7487998	7487998	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatgaatgaaagccaaattAtttttttgttttttcttcct	5	5	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7487998	T	T	7487998	1	4	55	0	1	0	0	0	0	0	0	0	15600	464	16	5		5	SYT9	11	7487998	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	622405	7487998	127518518	604	61807											
CALCB	797	broad.mit.edu	37	chr11	15098940	15098940	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcaacttcgtgcccacCaatgtgggttccaaagcctt	9	12	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15098940	A	A	15098940	2	1	55	1	0	0	0	0	0	0	0	1	2602	581	21	2		2	CALCB	11	15098940	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7610942	15098940	119907576	605	61808											
USH1C	10083	broad.mit.edu	37	chr11	17552612	17552612	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagaaaagtgggtgaccaTgttgtgccacacagcctagt	11	10	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17552612	C	C	17552612	1	2	55	0	1	0	0	0	0	0	0	0	17160	1479	51	5		5	USH1C	11	17552612	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2453672	17552612	117453904	606	61809											
KCNC1	3746	broad.mit.edu	37	chr11	17762014	17762014	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatagaggtgtgagagcAggcaggggagtgttggggct	21	4	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17762014	T	T	17762014	1	4	55	0	1	0	0	0	0	0	0	0	8084	203	7	5		5	KCNC1	11	17762014	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	209402	17762014	117244502	607	61810											
KCNC1	3746	broad.mit.edu	37	chr11	17793833	17793833	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgggccgtggtcaccAtgacgaccctgggctatgga	15	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17793833	T	T	17793833	3	4	55	1	0	0	0	0	1	0	0	0	8084	217	8	5	1198	5	KCNC1	11	17793833	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	31819	17793833	117212683	608	61811											
E2F8	79733	broad.mit.edu	37	chr11	19253732	19253732	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaattaaaaattagaaaAacacacacacaaataataaa	3	5	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19253732	T	T	19253732	1	4	55	0	1	0	0	0	0	0	0	0	4913	29	1	5		5	E2F8	11	19253732	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1459899	19253732	115752784	609	61812											
FIBIN	387758	broad.mit.edu	37	chr11	27016184	27016184	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggactctgcaccactacttCgtgcccgatggggactatga	12	12	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27016184	G	G	27016184	3	3	55	1	0	0	0	0	1	0	0	0	5942	883	31	4	113	4	FIBIN	11	27016184	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7762452	27016184	107990332	610	61813											
OR4S1	256148	broad.mit.edu	37	chr11	48328563	48328563	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgtccctccaccaccctGgctgctgacaaacttatcat	5	16	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48328563	T	T	48328563	2	4	55	1	0	0	0	0	0	0	0	1	11176	1335	47	2		2	OR4S1	11	48328563	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	21312379	48328563	86677953	611	61814											
OR4C11	219429	broad.mit.edu	37	chr11	55370922	55370922	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggccctcaatttatcCtttgttttctgaaataattt	6	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55370922	A	A	55370922	4	1	55	1	0	0	0	0	0	1	0	0	11139	690	24	2	6	2	OR4C11	11	55370922	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7042359	55370922	79635594	612	61815											
OR4C11	219429	broad.mit.edu	37	chr11	55371655	55371655	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagcaagaatctgcaaaGgacaaataaaatagaaagaa	8	4	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55371655	A	A	55371655	2	1	55	1	0	0	0	0	0	0	0	1	11139	987	35	4		4	OR4C11	11	55371655	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	733	55371655	79634861	613	61816											
SPRYD5	84767	broad.mit.edu	37	chr11	55648409	55648409	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggaggtccatgtgggggActcttggaattgggcttttg	17	6	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55648409	G	G	55648409	1	3	55	0	1	0	0	0	0	0	0	0	15229	290	10	5		5	SPRYD5	11	55648409	5'Flank	SNP	A	TCGA-17-Z023-01A-01W-0746-08	276754	55648409	79358107	614	61817											
OR9G4	283189	broad.mit.edu	37	chr11	56510823	56510823	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagcaacaagcccagtacaGagggcggtggacatggtacc	13	12	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56510823	C	C	56510823	2	2	55	1	0	0	0	0	0	0	0	1	11345	929	33	4		4	OR9G4	11	56510823	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	862414	56510823	78495693	615	61818											
OR9I1	219954	broad.mit.edu	37	chr11	57886056	57886056	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttaagctgtagatcagAgggttcagcatggggatgac	13	6	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57886056	T	T	57886056	2	4	55	1	0	0	0	0	0	0	0	1	11347	291	11	5		5	OR9I1	11	57886056	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1375233	57886056	77120460	616	61819											
OR9I1	219954	broad.mit.edu	37	chr11	57886223	57886223	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtcttggccctgccacCtgaagacttcactttcaaaa	7	12	3	2	rs143742477		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57886223	T	T	57886223	3	4	55	1	0	0	0	0	1	0	0	0	11347	681	24	4	254	4	OR9I1	11	57886223	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	167	57886223	77120293	617	61820											
MS4A1	931	broad.mit.edu	37	chr11	60231794	60231794	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatcactcctggcagcaacgGagaaaaactccaggaagtgt	11	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60231794	T	T	60231794	4	4	55	1	0	0	0	0	0	1	0	0	9948	1175	41	3	323	3	MS4A1	11	60231794	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2345571	60231794	74774722	618	61821											
C11orf66	220004	broad.mit.edu	37	chr11	61249738	61249738	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcctgggaagccctgcCtgtttttgaccttggggtct	12	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61249738	T	T	61249738	1	4	55	0	1	0	0	0	0	0	0	0	1668	696	24	4		4	C11orf66	11	61249738	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1017944	61249738	73756778	619	61822											
RARRES3	5920	broad.mit.edu	37	chr11	63312001	63312001	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaatcacatttgtgaaAggataaacaccagtagttcc	6	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63312001	G	G	63312001	1	3	55	0	1	0	0	0	0	0	0	0	13165	87	3	5		5	RARRES3	11	63312001	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2062263	63312001	71694515	620	61823											
FRMD8	83786	broad.mit.edu	37	chr11	65167168	65167168	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcagcctccctcagcatttCtggtgctggccggaggctga	13	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65167168	G	G	65167168	1	3	55	0	1	0	0	0	0	0	0	0	6116	928	32	4		4	FRMD8	11	65167168	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1855167	65167168	69839348	621	61824											
SHANK2	22941	broad.mit.edu	37	chr11	70333298	70333298	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacggctccttcacgatgaTggtcgggatagggatggagc	17	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70333298	C	C	70333298	3	2	55	1	0	0	0	0	1	0	0	0	14378	1464	51	5	2457	5	SHANK2	11	70333298	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5166130	70333298	64673218	622	61825											
DHCR7	1717	broad.mit.edu	37	chr11	71155932	71155932	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactgcccttgagatgcggTtctgtcattggtgacgccat	11	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71155932	C	C	71155932	3	2	55	1	0	0	0	0	1	0	0	0	4517	1725	60	5	1388	5	DHCR7	11	71155932	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	822634	71155932	63850584	623	61826											
KRTAP5-7	440050	broad.mit.edu	37	chr11	71238469	71238469	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgtgcccgtctgctgCtgcaagcccgtgtgctgctg	14	13	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71238469	G	G	71238469	3	3	55	1	0	0	0	0	1	0	0	0	8638	805	28	4	125	4	KRTAP5-7	11	71238469	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	82537	71238469	63768047	624	61827											
XRRA1	143570	broad.mit.edu	37	chr11	74651834	74651834	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagaagtcacctgaccttcCtccggcacgcgaagcagatt	10	13	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74651834	G	G	74651834	3	3	55	1	0	0	0	0	1	0	0	0	17588	680	24	4	2356	4	XRRA1	11	74651834	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3413365	74651834	60354682	625	61828											
USP35	57558	broad.mit.edu	37	chr11	77919736	77919736	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcagaggcgtggacatgtGggctgggttgggtcagggac	20	7	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77919736	C	C	77919736	1	2	55	0	1	0	0	0	0	0	0	0	17193	1363	47	4		4	USP35	11	77919736	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3267902	77919736	57086780	626	61829											
DLG2	1740	broad.mit.edu	37	chr11	83445440	83445440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttccttccttccttccTtccttccttccctccctcct	0	22	0	0	rs72337179		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83445440	C	C	83445440	1	2	55	0	1	0	0	0	0	0	0	0	4595	1624	56	5		5	DLG2	11	83445440	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5525704	83445440	51561076	627	61830											
CCDC83	220047	broad.mit.edu	37	chr11	85630467	85630467	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatgcccattcattttcaaGagaaggaaattccagtcaaa	6	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85630467	C	C	85630467	3	2	55	1	0	0	0	0	1	0	0	0	2885	943	33	4	1291	4	CCDC83	11	85630467	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2185027	85630467	49376049	628	61831											
ME3	10873	broad.mit.edu	37	chr11	86185291	86185291	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgactcgcaacatagtcacAggaagcagtaacttctaagc	8	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86185291	T	T	86185291	1	4	55	0	1	0	0	0	0	0	0	0	9512	203	7	5		5	ME3	11	86185291	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	554824	86185291	48821225	629	61832											
AMOTL1	154810	broad.mit.edu	37	chr11	94586993	94586993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggaggtacgtgcacctGtagtttaaataggatctcca	13	7	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94586993	T	T	94586993	1	4	55	0	1	0	0	0	0	0	0	0	583	1392	48	3		3	AMOTL1	11	94586993	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8401702	94586993	40419523	630	61833											
CNTN5	53942	broad.mit.edu	37	chr11	100169965	100169965	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagacccaatggaacacgTggctggaaggaaaaaatggt	12	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100169965	A	A	100169965	2	1	55	1	0	0	0	0	0	0	0	1	3676	1683	59	5		5	CNTN5	11	100169965	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5582972	100169965	34836551	631	61834											
ARHGAP20	57569	broad.mit.edu	37	chr11	110462849	110462849	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcccagtttatgatagatCttctccttttaaatgtctta	6	8	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110462849	A	A	110462849	3	1	55	1	0	0	0	0	1	0	0	0	872	913	32	3	2604	3	ARHGAP20	11	110462849	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	10292884	110462849	24543667	632	61835											
C11orf88	399949	broad.mit.edu	37	chr11	111386748	111386748	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattatttcagattgaatttGactttattccctctagaaaa	4	6	2	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111386748	C	C	111386748	1	2	55	0	1	0	0	0	0	0	0	0	1682	1305	45	4		4	C11orf88	11	111386748	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	923899	111386748	23619768	633	61836											
ZBTB16	7704	broad.mit.edu	37	chr11	114004008	114004008	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggcgttggctcctcccCagccctgccccacccctggc	10	21	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114004008	T	T	114004008	1	4	55	0	1	0	0	0	0	0	0	0	17652	609	21	4		4	ZBTB16	11	114004008	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2617260	114004008	21002508	634	61837											
BUD13	84811	broad.mit.edu	37	chr11	116633908	116633908	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatggatctggggtaccatGacggaccctcctaggagatg	14	9	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116633908	A	A	116633908	3	1	55	1	0	0	0	0	1	0	0	0	1583	1290	45	4	1490	4	BUD13	11	116633908	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2629900	116633908	18372608	635	61838											
DSCAML1	57453	broad.mit.edu	37	chr11	117320000	117320000	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctctgggcgctgctgcttgGgtgggttgtgaaaattcgcg	17	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117320000	C	C	117320000	1	2	55	0	1	0	0	0	0	0	0	0	4809	1247	43	4		4	DSCAML1	11	117320000	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	686092	117320000	17686516	636	61839											
GRIK4	2900	broad.mit.edu	37	chr11	120668026	120668026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatattattcctcattaggCagcagctggggactcggagc	11	10	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120668026	A	A	120668026	1	1	55	0	1	0	0	0	0	0	0	0	6842	725	25	3		3	GRIK4	11	120668026	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3348026	120668026	14338490	637	61840											
TECTA	7007	broad.mit.edu	37	chr11	121028887	121028887	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttcgcccgtctacttctAcattaacgaagagcagattc	6	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121028887	G	G	121028887	3	3	55	1	0	0	0	0	1	0	0	0	15869	391	14	5	4693	5	TECTA	11	121028887	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	360861	121028887	13977629	638	61841											
GRAMD1B	57476	broad.mit.edu	37	chr11	123474050	123474050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtttctcctcttctccagGggaaccagcccggctcagtg	11	14	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123474050	T	T	123474050	1	4	55	0	1	0	0	0	0	0	0	0	6814	1247	43	2		2	GRAMD1B	11	123474050	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2445163	123474050	11532466	639	61842											
OR8D1	283159	broad.mit.edu	37	chr11	124179838	124179838	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaccgtggtgtagaacacAgaggacaccttctcctggtc	10	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124179838	G	G	124179838	2	3	55	1	0	0	0	0	0	0	0	1	11325	175	7	5		5	OR8D1	11	124179838	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	705788	124179838	10826678	640	61843											
OR8B8	26493	broad.mit.edu	37	chr11	124310147	124310147	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcatgggcaccacagtggTatagaatagggaagacacct	13	8	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124310147	A	A	124310147	3	1	55	1	0	0	0	0	1	0	0	0	11324	1638	57	5	103	5	OR8B8	11	124310147	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	130309	124310147	10696369	641	61844											
HEPACAM	220296	broad.mit.edu	37	chr11	124792485	124792485	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatatcctggctcctacCttggccaaacctttccctcc	5	17	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792485	T	T	124792485	1	4	55	0	1	0	0	0	0	0	0	0	7119	696	24	4		4	HEPACAM	11	124792485	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	482338	124792485	10214031	642	61845											
ETS1	2113	broad.mit.edu	37	chr11	128359204	128359204	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctttctgcaggatctctagAtgttcccataagatgtcccc	7	13	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128359204	T	T	128359204	3	4	55	1	0	0	0	0	1	0	0	0	5317	330	12	5	965	5	ETS1	11	128359204	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3566719	128359204	6647312	643	61846											
NTM	50863	broad.mit.edu	37	chr11	131296679	131296679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttcttggggcacgaaagCggaggaagagctggcatatt	15	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131296679	A	A	131296679	1	1	55	0	1	0	0	0	0	0	0	0	10794	783	27	3		3	NTM	11	131296679	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2937475	131296679	3709837	644	61847											
OPCML	4978	broad.mit.edu	37	chr11	132290256	132290256	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatagttcttccctgacaaGcaaatacacatacatgcttc	4	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132290256	C	C	132290256	1	2	55	0	1	0	0	0	0	0	0	0	10968	986	34	4		4	OPCML	11	132290256	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	993577	132290256	2716260	645	61848											
LRTM2	654429	broad.mit.edu	37	chr12	1940215	1940215	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggccttggcctcaccaCggtgcccccagacgtgcccg	12	18	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1940215	G	G	1940215	3	3	55	1	0	0	0	0	1	0	0	0	9132	536	19	4	188	4	LRTM2	12	1940215	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08		1940215	131911680	646	61849											
CACNA1C	775	broad.mit.edu	37	chr12	2714783	2714783	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgggctgcccctgctacctCctggaaaggctcctggcatc	11	16	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2714783	A	A	2714783	1	1	55	0	1	0	0	0	0	0	0	0	2566	870	30	3		3	CACNA1C	12	2714783	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	774568	2714783	131137112	647	61850											
CACNA1C	775	broad.mit.edu	37	chr12	2786943	2786943	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgggcctgagatccgacgGgccatctctggagatctcac	12	13	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2786943	A	A	2786943	2	1	55	1	0	0	0	0	0	0	0	1	2566	1219	43	4		4	CACNA1C	12	2786943	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	72160	2786943	131064952	648	61851											
TSPAN9	10867	broad.mit.edu	37	chr12	3377370	3377370	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcctgcagcctgccctctGtgcgttcctgcagcctgccc	10	18	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3377370	C	C	3377370	1	2	55	0	1	0	0	0	0	0	0	0	16779	1392	48	4		4	TSPAN9	12	3377370	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	590427	3377370	130474525	649	61852											
TSPAN9	10867	broad.mit.edu	37	chr12	3377391	3377391	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgttcctgcagcctgcccTctctgtgttcctgcagcctg	10	16	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3377391	C	C	3377391	1	2	55	0	1	0	0	0	0	0	0	0	16779	1566	54	5		5	TSPAN9	12	3377391	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	21	3377391	130474504	650	61853											
NDUFA9	4704	broad.mit.edu	37	chr12	4796114	4796114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatccaaagatgcacatcaCagacatgaaattgcctcacc	5	12	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4796114	A	A	4796114	3	1	55	1	0	0	0	0	1	0	0	0	10367	478	17	3	1016	3	NDUFA9	12	4796114	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1418723	4796114	129055781	651	61854											
NTF3	4908	broad.mit.edu	37	chr12	5585497	5585497	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgcagcaggaggcaggAttctctgtatgatgttccaa	12	8	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5585497	T	T	5585497	1	4	55	0	1	0	0	0	0	0	0	0	10791	348	12	5		5	NTF3	12	5585497	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	789383	5585497	128266398	652	61855											
ANO2	57101	broad.mit.edu	37	chr12	5808750	5808750	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgacaggatcaaattcacAcgtaacatattaatcttaaa	4	7	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5808750	T	T	5808750	1	4	55	0	1	0	0	0	0	0	0	0	697	174	6	5		5	ANO2	12	5808750	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	223253	5808750	128043145	653	61856											
CHD4	1108	broad.mit.edu	37	chr12	6711247	6711247	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggagtatagtcgctgcccTcactgtctgagcgcagagcc	12	13	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6711247	C	C	6711247	3	2	55	1	0	0	0	0	1	0	0	0	3358	1551	54	5	5569	5	CHD4	12	6711247	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	902497	6711247	127140648	654	61857											
FOXJ2	55810	broad.mit.edu	37	chr12	8195141	8195141	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggtactgagcttaccctGatacttcaactgcatggtgt	10	9	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8195141	A	A	8195141	1	1	55	0	1	0	0	0	0	0	0	0	6072	1305	45	4		4	FOXJ2	12	8195141	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1483894	8195141	125656754	655	61858											
A2ML1	144568	broad.mit.edu	37	chr12	8991842	8991842	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaaacttttctctgcaTagacaaaaaaatgcataacc	4	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8991842	C	C	8991842	1	2	55	0	1	0	0	0	0	0	0	0	5	1421	49	5		5	A2ML1	12	8991842	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	796701	8991842	124860053	656	61859											
PRB4	5545	broad.mit.edu	37	chr12	11106551	11106551	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaggaagagatgggggctCatattcagaaattttttgaa	11	5	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11106551	A	A	11106551	1	1	55	0	1	0	0	0	0	0	0	0	12551	841	29	3		3	PRB4	12	11106551	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2114709	11106551	122745344	657	61860											
ETV6	2120	broad.mit.edu	37	chr12	11972068	11972068	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacaaatctggttcctcaCagccaagttctggaaagagt	8	11	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11972068	T	T	11972068	1	4	55	0	1	0	0	0	0	0	0	0	5325	493	17	4		4	ETV6	12	11972068	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	865517	11972068	121879827	658	61861											
GSG1	83445	broad.mit.edu	37	chr12	13243530	13243530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtctcccagttgtattGtaccacctcctgggtggatg	10	13	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13243530	T	T	13243530	3	4	55	1	0	0	0	0	1	0	0	0	6886	1386	48	3	965	3	GSG1	12	13243530	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1271462	13243530	120608365	659	61862											
GSG1	83445	broad.mit.edu	37	chr12	13256246	13256246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgacacattttcattcCattttgtagaaccctatagt	6	8	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13256246	A	A	13256246	1	1	55	0	1	0	0	0	0	0	0	0	6886	609	21	2		2	GSG1	12	13256246	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	12716	13256246	120595649	660	61863											
GRIN2B	2904	broad.mit.edu	37	chr12	13716362	13716362	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcgtttgacgtcaccgcCactggggcagccggctggtc	16	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13716362	T	T	13716362	2	4	55	1	0	0	0	0	0	0	0	1	6846	581	21	4		4	GRIN2B	12	13716362	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	460116	13716362	120135533	661	61864											
GRIN2B	2904	broad.mit.edu	37	chr12	13764924	13764924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggaagccagggcctaGgttagattgtactgaaccat	11	9	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13764924	T	T	13764924	1	4	55	0	1	0	0	0	0	0	0	0	6846	1015	35	2		2	GRIN2B	12	13764924	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	48562	13764924	120086971	662	61865											
C12orf60	144608	broad.mit.edu	37	chr12	14959635	14959635	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttccaatatgatcgctgaAaaataaaatggtaaattttt	5	4	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14959635	G	G	14959635	1	3	55	0	1	0	0	0	0	0	0	0	1716	29	1	5		5	C12orf60	12	14959635	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1194711	14959635	118892260	663	61866											
AEBP2	121536	broad.mit.edu	37	chr12	19610309	19610309	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagtctctgtgtcctagggCatcaatgatagtcacgtagc	10	9	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19610309	T	T	19610309	1	4	55	0	1	0	0	0	0	0	0	0	350	725	25	4		4	AEBP2	12	19610309	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4650674	19610309	114241586	664	61867											
PDE3A	5139	broad.mit.edu	37	chr12	20766339	20766340	+	Intron	DNP	CC	AA	AA													tttgtgccttcagattcaggCcttttcttgcctgatcttgt							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20766340	AA	AA	20766339	1	1	55	0	1	0	0	0	0	0	0	0	11731	754	26	3		3	PDE3A	12	20766339	Intron	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	1156030	20766339	113085556	665	61868											
SLCO1B3	28234	broad.mit.edu	37	chr12	21051394	21051394	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcaacctgaattgaaagcActtgcaatgggtttccagtc	9	9	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21051394	T	T	21051394	2	4	55	1	0	0	0	0	0	0	0	1	14838	146	6	5		5	SLCO1B3	12	21051394	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	285055	21051394	112800501	666	61869											
SLCO1B3	28234	broad.mit.edu	37	chr12	21229353	21229353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatatctgaaacattttcCttggattgatatcttcttat	5	6	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21229353	A	A	21229353	1	1	55	0	1	0	0	0	0	0	0	0	14838	696	24	2		2	SLCO1B3	12	21229353	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	177959	21229353	112622542	667	61870											
IAPP	3375	broad.mit.edu	37	chr12	21531177	21531177	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccatgttaccagtcatcaGgtggaaaagcggaaatgcaa	10	8	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21531177	C	C	21531177	3	2	55	1	0	0	0	0	1	0	0	0	7542	991	35	4	93	4	IAPP	12	21531177	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	301824	21531177	112320718	668	61871											
ITPR2	3709	broad.mit.edu	37	chr12	26835496	26835496	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaattaaaccatcttcaGtgacatttacctttaacata	3	8	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26835496	C	C	26835496	1	2	55	0	1	0	0	0	0	0	0	0	7991	1044	36	4		4	ITPR2	12	26835496	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5304319	26835496	107016399	669	61872											
SYT10	341359	broad.mit.edu	37	chr12	33535420	33535420	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcctcttttttaatcttcGaccttcacacatcagggaca	4	12	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33535420	T	T	33535420	2	4	55	1	0	0	0	0	0	0	0	1	15585	1066	37	3		3	SYT10	12	33535420	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6699924	33535420	100316475	670	61873											
KIF21A	55605	broad.mit.edu	37	chr12	39698630	39698630	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttatacatactttgatgTaatgatccttggagccagtg	8	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39698630	A	A	39698630	3	1	55	1	0	0	0	0	1	0	0	0	8358	1638	57	5	487	5	KIF21A	12	39698630	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	6163210	39698630	94153265	671	61874											
CNTN1	1272	broad.mit.edu	37	chr12	41386975	41386975	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagagcagtggacttaatcCcatggatggagtatgaattc	11	7	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41386975	G	G	41386975	3	3	55	1	0	0	0	0	1	0	0	0	3672	623	22	4	2079	4	CNTN1	12	41386975	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1688345	41386975	92464920	672	61875											
PDZRN4	29951	broad.mit.edu	37	chr12	41587854	41587854	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaattttgcttacatctTtcttctgctaatgatttttt	3	6	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41587854	A	A	41587854	1	1	55	0	1	0	0	0	0	0	0	0	11804	1856	64	5		5	PDZRN4	12	41587854	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	200879	41587854	92264041	673	61876											
PDZRN4	29951	broad.mit.edu	37	chr12	41967396	41967396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcgagatgaaaatggggCgctactggagcaaagaggag	17	5	0	4	rs144265671		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41967396	A	A	41967396	3	1	55	1	0	0	0	0	1	0	0	0	11804	768	27	3	2926	3	PDZRN4	12	41967396	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	379542	41967396	91884499	674	61877											
ADAMTS20	80070	broad.mit.edu	37	chr12	43858455	43858455	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacactgcttgtttccatcaTatcgtgatccaggaagttct	7	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43858455	C	C	43858455	3	2	55	1	0	0	0	0	1	0	0	0	266	1406	49	5	4403	5	ADAMTS20	12	43858455	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1891059	43858455	89993440	675	61878											
PUS7L	83448	broad.mit.edu	37	chr12	44139747	44139747	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcacttttaaaaatcccaTaaaaaggtacaaaagaaaaa	3	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44139747	C	C	44139747	1	2	55	0	1	0	0	0	0	0	0	0	12942	1421	49	5		5	PUS7L	12	44139747	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	281292	44139747	89712148	676	61879											
PLEKHA9	51054	broad.mit.edu	37	chr12	45567059	45567059	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcccaatactgaaagcttCtttccggtggtcaccttcct	6	14	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45567059	A	A	45567059	4	1	55	1	0	0	0	0	0	1	0	0	12158	922	32	3	89	3	PLEKHA9	12	45567059	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1427312	45567059	88284836	677	61880											
SLC38A4	55089	broad.mit.edu	37	chr12	47173911	47173911	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtaagatgaacatctaatCccccaaatggaaaaaaaagt	6	7	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47173911	T	T	47173911	1	4	55	0	1	0	0	0	0	0	0	0	14720	870	30	4		4	SLC38A4	12	47173911	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1606852	47173911	86677984	678	61881											
PFKM	5213	broad.mit.edu	37	chr12	48533760	48533760	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccagtctctcttcataaaTgctaccacagtccatacaac	3	16	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48533760	A	A	48533760	1	1	55	0	1	0	0	0	0	0	0	0	11860	1479	51	5		5	PFKM	12	48533760	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1359849	48533760	85318135	679	61882											
CCNT1	904	broad.mit.edu	37	chr12	49089837	49089837	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactcccaccagtgcttcccGtcagttgagactgggatctc	9	14	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49089837	A	A	49089837	2	1	55	1	0	0	0	0	0	0	0	1	2964	1136	40	4		4	CCNT1	12	49089837	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	556077	49089837	84762058	680	61883											
ADCY6	112	broad.mit.edu	37	chr12	49176786	49176786	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgctctggttcatctggaaGaagtaccgctggtacaggcg	13	10	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49176786	C	C	49176786	3	2	55	1	0	0	0	0	1	0	0	0	298	933	33	4	3158	4	ADCY6	12	49176786	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	86949	49176786	84675109	681	61884											
FKBP11	51303	broad.mit.edu	37	chr12	49318374	49318374	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttttggccaagttctaTaaccagagggtctctggtca	10	10	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49318374	A	A	49318374	3	1	55	1	0	0	0	0	1	0	0	0	5960	1406	49	5	425	5	FKBP11	12	49318374	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	141588	49318374	84533521	682	61885											
KRT5	3852	broad.mit.edu	37	chr12	52910570	52910570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccagctcggccagcttGttcctggcatccttgagggc	11	15	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52910570	T	T	52910570	3	4	55	1	0	0	0	0	1	0	0	0	8550	1368	48	3	494	3	KRT5	12	52910570	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3592196	52910570	80941325	683	61886											
EIF4B	1975	broad.mit.edu	37	chr12	53431327	53431327	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccagcccctccaccaaagGagaatgcttgggtgaagcga	12	12	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53431327	C	C	53431327	3	2	55	1	0	0	0	0	1	0	0	0	5069	1175	41	4	1483	4	EIF4B	12	53431327	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	520757	53431327	80420568	684	61887											
C12orf10	60314	broad.mit.edu	37	chr12	53700879	53700879	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacacccgagagggtgccttGagcatggcccgtgccacctt	12	15	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53700879	C	C	53700879	3	2	55	1	0	0	0	0	1	0	0	0	1687	1281	45	4	1103	4	C12orf10	12	53700879	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	269552	53700879	80151016	685	61888											
HOXC11	3227	broad.mit.edu	37	chr12	54367588	54367588	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgaggcacccccggcctcggGactggcgtcccgggctgagg	17	16	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54367588	A	A	54367588	3	1	55	1	0	0	0	0	1	0	0	0	7377	1174	41	4	565	4	HOXC11	12	54367588	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	666709	54367588	79484307	686	61889											
HOXC9	3225	broad.mit.edu	37	chr12	54393959	54393972	+	5'UTR	DEL	AAAACCCCGTTACG	-	-													tacaataatcttatgtatgtAaaaccccgttacgatgtcgg							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54393972	-	-	54393959	6	5	55	0	1	1	0	1	0	0	0	0	7384	377	13	0		0	HOXC9	12	54393959	5'UTR	DEL	AAAACCCCGTTACG	TCGA-17-Z023-01A-01W-0746-08	26371	54393959	79457936	687	61890											
HOXC5	3222	broad.mit.edu	37	chr12	54427126	54427126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggctcaccccgaccgcCccgcctgcagcgccgcggcc	12	24	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54427126	A	A	54427126	3	1	55	1	0	0	0	0	1	0	0	0	7381	623	22	2	222	2	HOXC5	12	54427126	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	33167	54427126	79424769	688	61891											
KIAA0748	9840	broad.mit.edu	37	chr12	55360038	55360038	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccctgaacagtagtctaTgcagtgcttgttcgttggaa	10	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55360038	C	C	55360038	1	2	55	0	1	0	0	0	0	0	0	0	8260	1479	51	5		5	KIAA0748	12	55360038	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	932912	55360038	78491857	689	61892											
OR6C75	390323	broad.mit.edu	37	chr12	55759462	55759462	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagctctcttgcacaaacActcactttctagaactcatg	5	13	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55759462	G	G	55759462	3	3	55	1	0	0	0	0	1	0	0	0	11293	159	6	5	570	5	OR6C75	12	55759462	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	399424	55759462	78092433	690	61893											
MMP19	4327	broad.mit.edu	37	chr12	56231265	56231265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaacatctcccttcaagcGcaagctttgcttctcagtat	6	13	3	1	rs140916750	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56231265	T	T	56231265	1	4	55	0	1	0	0	0	0	0	0	0	9750	1102	38	3		3	MMP19	12	56231265	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	471803	56231265	77620630	691	61894											
MARS	4141	broad.mit.edu	37	chr12	57908546	57908546	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttgggggctatgtgcctGagatggtgctcacccctgat	13	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57908546	A	A	57908546	3	1	55	1	0	0	0	0	1	0	0	0	9408	1291	45	4	2073	4	MARS	12	57908546	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1677281	57908546	75943349	692	61895											
PIP4K2C	79837	broad.mit.edu	37	chr12	57994800	57994800	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctacatccattcccatcgGcccctgggcccaggagagtt	11	15	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57994800	T	T	57994800	2	4	55	1	0	0	0	0	0	0	0	1	12033	1190	42	3		3	PIP4K2C	12	57994800	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	86254	57994800	75857095	693	61896											
CYP27B1	1594	broad.mit.edu	37	chr12	58156960	58156960	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtaggttgatgctcctttCaggtaccaggacagtccggg	13	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58156960	G	G	58156960	3	3	55	1	0	0	0	0	1	0	0	0	4192	835	29	4	38	4	CYP27B1	12	58156960	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	162160	58156960	75694935	694	61897											
DPY19L2	283417	broad.mit.edu	37	chr12	63962929	63962929	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaattcttaaagaatcAggactactataataaagtga	5	4	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63962929	T	T	63962929	1	4	55	0	1	0	0	0	0	0	0	0	4781	203	7	5		5	DPY19L2	12	63962929	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	5805969	63962929	69888966	695	61898											
LGR5	8549	broad.mit.edu	37	chr12	71918213	71918226	+	Frame_Shift_Del	DEL	CATTCCCAAGGGAG	-	-													gcgggaaacgctctgacataCattcccaagggagcattcac							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71918226	-	-	71918213	7	5	55	1	0	1	0	1	0	0	0	0	8829	489	17	0	322	0	LGR5	12	71918213	Frame_Shift_Del	DEL	CATTCCCAAGGGAG	TCGA-17-Z023-01A-01W-0746-08	7955284	71918213	61933682	696	61899											
OSBPL8	114882	broad.mit.edu	37	chr12	76750467	76750467	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actctgaatgtctcccagttCtattcctttctttcttcttg	4	12	6	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76750467	A	A	76750467	4	1	55	1	0	0	0	0	0	1	0	0	11377	922	32	3	201	3	OSBPL8	12	76750467	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4832254	76750467	57101428	697	61900											
NAV3	89795	broad.mit.edu	37	chr12	78444626	78444626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgacaagtcgacccaccCccatgacctggaggttgggc	11	14	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78444626	A	A	78444626	3	1	55	1	0	0	0	0	1	0	0	0	10279	623	22	2	2257	2	NAV3	12	78444626	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1694159	78444626	55407269	698	61901											
NAV3	89795	broad.mit.edu	37	chr12	78516143	78516153	+	Frame_Shift_Del	DEL	AGGCACTCACG	-	-													tccttgtctggactgaccacAggcactcacgaggtccagag							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78516153	-	-	78516143	7	5	55	1	0	1	0	1	0	0	0	0	10279	175	7	0	4235	0	NAV3	12	78516143	Frame_Shift_Del	DEL	AGGCACTCACG	TCGA-17-Z023-01A-01W-0746-08	71517	78516143	55335752	699	61902											
PPFIA2	8499	broad.mit.edu	37	chr12	81851619	81851619	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgttccctgcaggcattTaattcttttgtcagtgcagc	9	9	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81851619	C	C	81851619	2	2	55	1	0	0	0	0	0	0	0	1	12406	1751	61	5		5	PPFIA2	12	81851619	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3335476	81851619	52000276	700	61903											
TMTC2	160335	broad.mit.edu	37	chr12	83290437	83290437	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctaaaggtaatcttttaTtttatgcttttgtctggata	7	5	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83290437	G	G	83290437	1	3	55	0	1	0	0	0	0	0	0	0	16384	1508	52	5		5	TMTC2	12	83290437	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1438818	83290437	50561458	701	61904											
TMTC3	160418	broad.mit.edu	37	chr12	88542108	88542108	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagatggctaatattaacCtaaaagaaataaccttaata	4	5	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88542108	G	G	88542108	3	3	55	1	0	0	0	0	1	0	0	0	16385	680	24	4	18	4	TMTC3	12	88542108	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5251671	88542108	45309787	702	61905											
EEA1	8411	broad.mit.edu	37	chr12	93170697	93170697	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcggcccactttctatTcaacgcttgtgtatgtttga	8	10	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93170697	A	A	93170697	3	1	55	1	0	0	0	0	1	0	0	0	4961	1783	62	5	207	5	EEA1	12	93170697	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4628589	93170697	40681198	703	61906											
C12orf63	374467	broad.mit.edu	37	chr12	97043856	97043856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggagagcaatggtaatGcaatctttcttgtttgcagt	11	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97043856	T	T	97043856	1	4	55	0	1	0	0	0	0	0	0	0	1719	1334	46	3		3	C12orf63	12	97043856	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3873159	97043856	36808039	704	61907											
C12orf63	374467	broad.mit.edu	37	chr12	97052045	97052045	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatgcacagcgccagcttcTgctgagaatacagaagttca	10	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97052045	A	A	97052045	3	1	55	1	0	0	0	0	1	0	0	0	1719	1580	55	5	670	5	C12orf63	12	97052045	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	8189	97052045	36799850	705	61908											
C12orf63	374467	broad.mit.edu	37	chr12	97078525	97078525	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaaaaggtagatttttaGaagtctgtagaacaagggca	11	3	1	4	rs115742269	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97078525	T	T	97078525	1	4	55	0	1	0	0	0	0	0	0	0	1719	957	33	3		3	C12orf63	12	97078525	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	26480	97078525	36773370	706	61909											
ANKS1B	56899	broad.mit.edu	37	chr12	99462555	99462560	+	Intron	DEL	CCTAGT	-	-													atccatttctctttattgtcCctagtcctagtcctagtcct					rs62774960		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99462560	-	-	99462555	6	5	55	0	1	1	0	1	0	0	0	0	689	638	22	0		0	ANKS1B	12	99462555	Intron	DEL	CCTAGT	TCGA-17-Z023-01A-01W-0746-08	2384030	99462555	34389340	707	61910											
NR1H4	9971	broad.mit.edu	37	chr12	100897125	100897125	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctgtcctctctcactcCttacctagtctcattttcag	3	16	5	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100897125	A	A	100897125	1	1	55	0	1	0	0	0	0	0	0	0	10714	696	24	2		2	NR1H4	12	100897125	5'Flank	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1434570	100897125	32954770	708	61911											
ANO4	121601	broad.mit.edu	37	chr12	101231844	101231844	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggggcatagtggacttgcTgatccttgtgattattgagt	14	5	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101231844	A	A	101231844	1	1	55	0	1	0	0	0	0	0	0	0	699	1595	55	5		5	ANO4	12	101231844	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	334719	101231844	32620051	709	61912											
PAH	5053	broad.mit.edu	37	chr12	103271368	103271368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtcctgagtacagattggCagaacatggccaaaggcctt	11	10	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103271368	A	A	103271368	1	1	55	0	1	0	0	0	0	0	0	0	11488	725	25	3		3	PAH	12	103271368	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2039524	103271368	30580527	710	61913											
STAB2	55576	broad.mit.edu	37	chr12	104109609	104109609	+	Frame_Shift_Del	DEL	G	-	-													aaagaaatcaacccgtgtttGgagaaccatggtggctgtga							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104109609	-	-	104109609	7	5	55	1	0	1	0	1	0	0	0	0	15356	1339	47	0	4724	0	STAB2	12	104109609	Frame_Shift_Del	DEL	G	TCGA-17-Z023-01A-01W-0746-08	838241	104109609	29742286	711	61914											
HCFC2	29915	broad.mit.edu	37	chr12	104480827	104480827	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcttaaagtatgtgtgctCacatgcttttaaaaatatat	6	5	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104480827	G	G	104480827	1	3	55	0	1	0	0	0	0	0	0	0	7059	841	29	4		4	HCFC2	12	104480827	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	371218	104480827	29371068	712	61915											
CORO1C	23603	broad.mit.edu	37	chr12	109094897	109094897	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatggaagatcaaattaccTaccttgtgcagagggaggac	12	7	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109094897	A	A	109094897	1	1	55	0	1	0	0	0	0	0	0	0	3787	1537	53	5		5	CORO1C	12	109094897	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4614070	109094897	24756998	713	61916											
TCTN1	79600	broad.mit.edu	37	chr12	111078943	111078943	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcagcaaaagtttgaaattCattttcttcaggtaaggttg	9	5	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111078943	G	G	111078943	3	3	55	1	0	0	0	0	1	0	0	0	15844	826	29	4	1299	4	TCTN1	12	111078943	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1984046	111078943	22772952	714	61917											
CCDC63	160762	broad.mit.edu	37	chr12	111336666	111336666	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagtttggagaccctgacCccagagggtcccaaacaccc	10	16	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111336666	A	A	111336666	1	1	55	0	1	0	0	0	0	0	0	0	2862	638	22	2		2	CCDC63	12	111336666	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	257723	111336666	22515229	715	61918											
KSR2	283455	broad.mit.edu	37	chr12	118020071	118020071	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagctgagaagtaggcaccAgtgcacacaggaatccagcc	12	11	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118020071	C	C	118020071	1	2	55	0	1	0	0	0	0	0	0	0	8654	203	7	5		5	KSR2	12	118020071	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	6683405	118020071	15831824	716	61919											
RFC5	5985	broad.mit.edu	37	chr12	118469086	118469086	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttgcagaggcctagatGctctgagggccattcacaat	11	9	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118469086	T	T	118469086	1	4	55	0	1	0	0	0	0	0	0	0	13356	1334	46	3		3	RFC5	12	118469086	3'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	449015	118469086	15382809	717	61920											
CCDC60	160777	broad.mit.edu	37	chr12	119916765	119916765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctgaaaccctcatccCtccagcagaaattatttgcc	5	14	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119916765	A	A	119916765	1	1	55	0	1	0	0	0	0	0	0	0	2859	696	24	2		2	CCDC60	12	119916765	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1447679	119916765	13935130	718	61921											
WDR66	144406	broad.mit.edu	37	chr12	122399998	122399998	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtacccaccactcaccaggGaactcttcctgcttatttgc	7	15	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122399998	T	T	122399998	4	4	55	1	0	0	0	0	0	1	0	0	17444	1175	41	3	2476	3	WDR66	12	122399998	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2483233	122399998	11451897	719	61922											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124236931	124236931	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtggaagatggatgtagAgaaatggcgtgtgaagaggt	18	2	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124236931	G	G	124236931	2	3	55	1	0	0	0	0	0	0	0	1	1173	301	11	5		5	ATP6V0A2	12	124236931	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1836933	124236931	9614964	720	61923											
SLC15A4	121260	broad.mit.edu	37	chr12	129278646	129278646	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtttcagtgaagtcagaCattttatgggaatttaaagt	9	4	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129278646	T	T	129278646	1	4	55	0	1	0	0	0	0	0	0	0	14514	493	17	4		4	SLC15A4	12	129278646	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5041715	129278646	4573249	721	61924											
TMEM132D	121256	broad.mit.edu	37	chr12	129559133	129559133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggcctttcttcttctGcaggatggacctgtctgtcg	10	12	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129559133	T	T	129559133	3	4	55	1	0	0	0	0	1	0	0	0	16170	1328	46	3	716	3	TMEM132D	12	129559133	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	280487	129559133	4292762	722	61925											
TMEM132D	121256	broad.mit.edu	37	chr12	129704048	129704048	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaacgagggccaagagggcGtataagggcaccggagacag	17	9	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129704048	A	A	129704048	1	1	55	0	1	0	0	0	0	0	0	0	16170	1160	40	4		4	TMEM132D	12	129704048	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	144915	129704048	4147847	723	61926											
TMEM132D	121256	broad.mit.edu	37	chr12	129747003	129747003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggctgggaggggagcatGgatgaggacaggcagccagg	21	7	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129747003	T	T	129747003	1	4	55	0	1	0	0	0	0	0	0	0	16170	1363	47	2		2	TMEM132D	12	129747003	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	42955	129747003	4104892	724	61927											
POLE	5426	broad.mit.edu	37	chr12	133244363	133244363	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacagctcagatacactgcTagtttctcataccgaaaaag	6	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133244363	A	A	133244363	1	1	55	0	1	0	0	0	0	0	0	0	12291	1537	53	5		5	POLE	12	133244363	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3497360	133244363	607532	725	61928											
ATP12A	479	broad.mit.edu	37	chr13	25281145	25281145	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcactcccactttctccctGggtcccccgccataggatgc	7	19	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25281145	A	A	25281145	1	1	55	0	1	0	0	0	0	0	0	0	1126	1363	47	4		4	ATP12A	13	25281145	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08		25281145	89888733	726	61929											
C13orf26	122046	broad.mit.edu	37	chr13	31526711	31526711	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaatctttttaaaaaatgTaatgagtaaaatgatttgac	5	3	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31526711	A	A	31526711	1	1	55	0	1	0	0	0	0	0	0	0	1735	1653	57	5		5	C13orf26	13	31526711	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	6245566	31526711	83643167	727	61930											
FRY	10129	broad.mit.edu	37	chr13	32792874	32792874	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatttcattctggttgttcTtgtatttgaaggtttagtaa	8	3	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32792874	C	C	32792874	1	2	55	0	1	0	0	0	0	0	0	0	6123	1624	56	5		5	FRY	13	32792874	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1266163	32792874	82377004	728	61931											
BRCA2	675	broad.mit.edu	37	chr13	32907305	32907314	+	Frame_Shift_Del	DEL	CCAGCCACCA	-	-													taattgataatggaagctggCcagccaccaccacacagaat					rs55821741		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32907314	-	-	32907305	7	5	55	1	0	1	0	1	0	0	0	0	1508	739	26	0	1724	0	BRCA2	13	32907305	Frame_Shift_Del	DEL	CCAGCCACCA	TCGA-17-Z023-01A-01W-0746-08	114431	32907305	82262573	729	61932											
BRCA2	675	broad.mit.edu	37	chr13	32914374	32914374	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagatatatgtaaatgtaGtatagggaagcttcataagt	9	3	2	1	rs80358820		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32914374	C	C	32914374	3	2	55	1	0	0	0	0	1	0	0	0	1508	1029	36	4	5920	4	BRCA2	13	32914374	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	7069	32914374	82255504	730	61933											
STARD13	90627	broad.mit.edu	37	chr13	33687211	33687211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagaacagcaggaaaggCacaaagaagtcagtaattgc	10	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33687211	A	A	33687211	1	1	55	0	1	0	0	0	0	0	0	0	15374	725	25	3		3	STARD13	13	33687211	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	772837	33687211	81482667	731	61934											
LCP1	3936	broad.mit.edu	37	chr13	46704868	46704868	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaaatgtttgtataaaggCatgagcattagactttacaa	8	4	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46704868	T	T	46704868	1	4	55	0	1	0	0	0	0	0	0	0	8763	725	25	4		4	LCP1	13	46704868	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	13017657	46704868	68465010	732	61935											
FAM124A	220108	broad.mit.edu	37	chr13	51805480	51805480	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacgctgaggtcttgtgttTcaggtccgactacagccacc	10	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51805480	C	C	51805480	1	2	55	0	1	0	0	0	0	0	0	0	5471	1798	62	5		5	FAM124A	13	51805480	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5100612	51805480	63364398	733	61936											
NEK5	341676	broad.mit.edu	37	chr13	52667105	52667105	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttggattatttgtgttagGagaatttggatttcagaata	10	2	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52667105	C	C	52667105	1	2	55	0	1	0	0	0	0	0	0	0	10422	1189	41	4		4	NEK5	13	52667105	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	861625	52667105	62502773	734	61937											
SCEL	8796	broad.mit.edu	37	chr13	78158623	78158623	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatctttccctttcctgcGtattctccagaccatttcag	4	15	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78158623	A	A	78158623	1	1	55	0	1	0	0	0	0	0	0	0	14000	1160	40	4		4	SCEL	13	78158623	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	25491518	78158623	37011255	735	61938											
RBM26	64062	broad.mit.edu	37	chr13	79896448	79896448	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatataaaagctatgaacgaTtaagggtaaaaataagtgga	9	2	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79896448	C	C	79896448	1	2	55	0	1	0	0	0	0	0	0	0	13234	1508	52	5		5	RBM26	13	79896448	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1737825	79896448	35273430	736	61939											
GPC5	2262	broad.mit.edu	37	chr13	92346033	92346033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaactctcggatgcaatGcatggaacatacgacattgg	11	8	1	1	rs140805446		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92346033	T	T	92346033	3	4	55	1	0	0	0	0	1	0	0	0	6666	1319	46	3	928	3	GPC5	13	92346033	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	12449585	92346033	22823845	737	61940											
GPC6	10082	broad.mit.edu	37	chr13	93982510	93982510	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcttggttgggtacagtgGctcatacttgtaatgccagc	12	9	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93982510	C	C	93982510	1	2	55	0	1	0	0	0	0	0	0	0	6667	1218	42	4		4	GPC6	13	93982510	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1636477	93982510	21187368	738	61941											
DCT	1638	broad.mit.edu	37	chr13	95121352	95121373	+	Intron	DEL	GAAATTTCTGAATTTGTACTCT	-	-													ggggtttatgtcgtttggaaGaaatttctgaatttgtactc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95121373	-	-	95121352	6	5	55	0	1	1	0	1	0	0	0	0	4337	957	33	0		0	DCT	13	95121352	Intron	DEL	GAAATTTCTGAATTTGTACTCT	TCGA-17-Z023-01A-01W-0746-08	1138842	95121352	20048526	739	61942											
DCT	1638	broad.mit.edu	37	chr13	95131180	95131180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctctttccccagctctGgccctccccaccaagcttgg	9	18	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95131180	A	A	95131180	1	1	55	0	1	0	0	0	0	0	0	0	4337	1363	47	4		4	DCT	13	95131180	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9828	95131180	20038698	740	61943											
FARP1	10160	broad.mit.edu	37	chr13	98983292	98983292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggccatcgatcagcatcCctttctattgcatttgacgg	8	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98983292	A	A	98983292	1	1	55	0	1	0	0	0	0	0	0	0	5733	638	22	2		2	FARP1	13	98983292	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3852112	98983292	16186586	741	61944											
NALCN	259232	broad.mit.edu	37	chr13	101997730	101997730	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcttctagctctggtgagCagtgtgtgtctggaatagct	12	8	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101997730	T	T	101997730	3	4	55	1	0	0	0	0	1	0	0	0	10242	710	25	4	4682	4	NALCN	13	101997730	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3014438	101997730	13172148	742	61945											
ITGBL1	9358	broad.mit.edu	37	chr13	102144938	102144938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctggattcacttctgtgGgtctactcctctgcctcttc	9	13	6	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102144938	T	T	102144938	1	4	55	0	1	0	0	0	0	0	0	0	7972	1247	43	2		2	ITGBL1	13	102144938	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	147208	102144938	13024940	743	61946											
COL4A2	1284	broad.mit.edu	37	chr13	111007803	111007803	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcacctgtgtgtgtggggGagggctgcactagctcacct	15	11	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111007803	T	T	111007803	1	4	55	0	1	0	0	0	0	0	0	0	3722	1189	41	3		3	COL4A2	13	111007803	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8862865	111007803	4162075	744	61947											
MCF2L	23263	broad.mit.edu	37	chr13	113668972	113668972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccacgtgacgccactccCgtaggtgcctgtggatgtgc	13	14	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113668972	T	T	113668972	1	4	55	0	1	0	0	0	0	0	0	0	9472	667	23	4		4	MCF2L	13	113668972	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2661169	113668972	1500906	745	61948											
UPF3A	65110	broad.mit.edu	37	chr13	115057048	115057048	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctttacctgatgaacacCctccctgcttctgccattct	6	16	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115057048	T	T	115057048	1	4	55	0	1	0	0	0	0	0	0	0	17131	638	22	4		4	UPF3A	13	115057048	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1388076	115057048	112830	746	61949											
EDDM3A	10876	broad.mit.edu	37	chr14	21216213	21216213	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacatcctcagatattggtAgagtattcagtgcttccaaa	8	9	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21216213	T	T	21216213	1	4	55	0	1	0	0	0	0	0	0	0	4949	435	15	5		5	EDDM3A	14	21216213	3'UTR	SNP	A	TCGA-17-Z023-01A-01W-0746-08		21216213	86133327	747	61950											
RNASE8	122665	broad.mit.edu	37	chr14	21526388	21526388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgggtgagctcacctcaGggaagtacccaaactgcagg	12	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21526388	T	T	21526388	3	4	55	1	0	0	0	0	1	0	0	0	13520	1000	35	2	339	2	RNASE8	14	21526388	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	310175	21526388	85823152	748	61951											
ACIN1	22985	broad.mit.edu	37	chr14	23532768	23532768	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccctctgcccattctcctGgccctctgcaggtactacct	6	18	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23532768	A	A	23532768	4	1	55	1	0	0	0	0	0	1	0	0	142	1357	47	4	1265	4	ACIN1	14	23532768	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2006380	23532768	83816772	749	61952											
MYH6	4624	broad.mit.edu	37	chr14	23863324	23863324	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcctgcagcagggacaCcatcttctcctccagctcct	6	18	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23863324	T	T	23863324	3	4	55	1	0	0	0	0	1	0	0	0	10132	507	18	4	3257	4	MYH6	14	23863324	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	330556	23863324	83486216	750	61953											
NGDN	25983	broad.mit.edu	37	chr14	23946391	23946391	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggtctgagcctgctggaaActgtctttctctggcaggat	12	9	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23946391	T	T	23946391	1	4	55	0	1	0	0	0	0	0	0	0	10488	58	2	5		5	NGDN	14	23946391	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	83067	23946391	83403149	751	61954											
ADCY4	196883	broad.mit.edu	37	chr14	24795299	24795299	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtacttctgcgagttgagCtgctcaatgacctggaagaa	11	10	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24795299	T	T	24795299	2	4	55	1	0	0	0	0	0	0	0	1	296	796	28	4		4	ADCY4	14	24795299	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	848908	24795299	82554241	752	61955											
STXBP6	29091	broad.mit.edu	37	chr14	25326213	25326213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagaatgcctttgctcaGcattggacaattcactcacc	7	11	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25326213	T	T	25326213	1	4	55	0	1	0	0	0	0	0	0	0	15476	986	34	3		3	STXBP6	14	25326213	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	530914	25326213	82023327	753	61956											
SCFD1	23256	broad.mit.edu	37	chr14	31152507	31152507	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactgggatagtagcagggTgtgaggaatttcacctgggt	15	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31152507	G	G	31152507	1	3	55	0	1	0	0	0	0	0	0	0	14001	1711	59	5		5	SCFD1	14	31152507	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	5826294	31152507	76197033	754	61957											
NPAS3	64067	broad.mit.edu	37	chr14	34177116	34177117	+	Intron	DNP	GG	AT	AT													gtgagtcaatatctgaaccgGggggtggtgagggaaggtat							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	34177117	AT	AT	34177116	1	1	55	0	1	0	0	0	0	0	0	0	10659	1247	43	4		4	NPAS3	14	34177116	Intron	DNP	GG	TCGA-17-Z023-01A-01W-0746-08	3024609	34177116	73172424	755	61958											
RALGAPA1	253959	broad.mit.edu	37	chr14	36235863	36235863	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttcaatgattttgtaagagGaagaattctctcaggaaatg	10	4	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36235863	A	A	36235863	1	1	55	0	1	0	0	0	0	0	0	0	13121	1189	41	4		4	RALGAPA1	14	36235863	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2058747	36235863	71113677	756	61959											
FANCM	57697	broad.mit.edu	37	chr14	45633586	45633586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacagtttcgtgacggtGgttacaacacgctggtttct	11	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45633586	T	T	45633586	3	4	55	1	0	0	0	0	1	0	0	0	5728	1348	47	2	1644	2	FANCM	14	45633586	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9397723	45633586	61715954	757	61960											
MDGA2	161357	broad.mit.edu	37	chr14	47530415	47530415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacttcaatcattctaaatGtgaacatcttttacatcata	2	8	5	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47530415	T	T	47530415	1	4	55	0	1	0	0	0	0	0	0	0	9500	1392	48	3		3	MDGA2	14	47530415	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1896829	47530415	59819125	758	61961											
TRIM9	114088	broad.mit.edu	37	chr14	51446144	51446144	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccgcagggaagaagagGccctccacgttatcaaatgc	11	12	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51446144	A	A	51446144	2	1	55	1	0	0	0	0	0	0	0	1	16674	1190	42	4		4	TRIM9	14	51446144	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3915729	51446144	55903396	759	61962											
SPTB	6710	broad.mit.edu	37	chr14	65216421	65216421	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccattactcagcctaggaGgacaaagggtttcctgtcat	10	10	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65216421	A	A	65216421	1	1	55	0	1	0	0	0	0	0	0	0	15236	1015	35	4		4	SPTB	14	65216421	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	13770277	65216421	42133119	760	61963											
SPTB	6710	broad.mit.edu	37	chr14	65292045	65292045	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccccatgatgccagacctGtgcccaagaccacccttgtg	9	16	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65292045	A	A	65292045	1	1	55	0	1	0	0	0	0	0	0	0	15236	1392	48	4		4	SPTB	14	65292045	5'Flank	SNP	G	TCGA-17-Z023-01A-01W-0746-08	75624	65292045	42057495	761	61964											
RDH12	145226	broad.mit.edu	37	chr14	68192033	68192033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggagtggctgctccaccCtagaccatctatggccctta	10	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68192033	A	A	68192033	1	1	55	0	1	0	0	0	0	0	0	0	13299	696	24	2		2	RDH12	14	68192033	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2899988	68192033	39157507	762	61965											
MAP3K9	4293	broad.mit.edu	37	chr14	71216701	71216701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagaaggaataggaagggCgagtttgttcatggccactc	14	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71216701	A	A	71216701	3	1	55	1	0	0	0	0	1	0	0	0	9349	768	27	3	2297	3	MAP3K9	14	71216701	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3024668	71216701	36132839	763	61966											
NRXN3	9369	broad.mit.edu	37	chr14	79746711	79746711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatctggttcctgttctGgggatgtatcgtcagctctg	14	8	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79746711	T	T	79746711	1	4	55	0	1	0	0	0	0	0	0	0	10762	1357	47	2		2	NRXN3	14	79746711	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8530010	79746711	27602829	764	61967											
KCNK13	56659	broad.mit.edu	37	chr14	90650564	90650564	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacctcttcctggagcgCctgatcaccatcatcgccta	6	16	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90650564	T	T	90650564	2	4	55	1	0	0	0	0	0	0	0	1	8131	726	26	4		4	KCNK13	14	90650564	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	10903853	90650564	16698976	765	61968											
KIAA1409	57578	broad.mit.edu	37	chr14	94053172	94053172	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgcctgaagattctctgtCtgcatggagaatgtttatac	9	7	2	3	rs138158671		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94053172	A	A	94053172	3	1	55	1	0	0	0	0	1	0	0	0	8300	912	32	3	2493	3	KIAA1409	14	94053172	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3402608	94053172	13296368	766	61969											
SERPINA3	12	broad.mit.edu	37	chr14	95081196	95081196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctgagtatgggaaatGccatgtttgtcaaagagcaa	12	6	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95081196	T	T	95081196	3	4	55	1	0	0	0	0	1	0	0	0	14203	1319	46	3	420	3	SERPINA3	14	95081196	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1028024	95081196	12268344	767	61970											
ATG2B	55102	broad.mit.edu	37	chr14	96784090	96784090	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttgttgaaagtattaatGagctgactggctactgaaag	10	5	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96784090	C	C	96784090	2	2	55	1	0	0	0	0	0	0	0	1	1098	1277	45	4		4	ATG2B	14	96784090	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1702894	96784090	10565450	768	61971											
TDRD9	122402	broad.mit.edu	37	chr14	104516028	104516028	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggaatcaggtgagtgggaCgcaggctgctacatgagcag	17	7	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104516028	T	T	104516028	1	4	55	0	1	0	0	0	0	0	0	0	15858	551	19	4		4	TDRD9	14	104516028	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7731938	104516028	2833512	769	61972											
C15orf2	23742	broad.mit.edu	37	chr15	24923730	24923730	+	Frame_Shift_Del	DEL	G	-	-													ccacacttggggccactgatGggcagcagaagtctgacagt							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24923730	-	-	24923730	7	5	55	1	0	1	0	1	0	0	0	0	1797	1348	47	0	2718	0	C15orf2	15	24923730	Frame_Shift_Del	DEL	G	TCGA-17-Z023-01A-01W-0746-08		24923730	77607662	770	61973											
UBE3A	7337	broad.mit.edu	37	chr15	25616902	25616902	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaaggggaataatcctctCtttctctacataattcaaga	5	8	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25616902	G	G	25616902	3	3	55	1	0	0	0	0	1	0	0	0	17005	913	32	4	2231	4	UBE3A	15	25616902	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	693172	25616902	76914490	771	61974											
RYR3	6263	broad.mit.edu	37	chr15	33633015	33633015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcaggagacacaattcaGtccataacacttggaatcta	7	9	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33633015	T	T	33633015	1	4	55	0	1	0	0	0	0	0	0	0	13881	1044	36	3		3	RYR3	15	33633015	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8016113	33633015	68898377	772	61975											
RYR3	6263	broad.mit.edu	37	chr15	34040333	34040333	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagaaggaaatttatcgcTggcctgcgcgagagtccctg	14	9	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34040333	C	C	34040333	3	2	55	1	0	0	0	0	1	0	0	0	13881	1580	55	5	8222	5	RYR3	15	34040333	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	407318	34040333	68491059	773	61976											
MEIS2	4212	broad.mit.edu	37	chr15	37391000	37391000	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaagagaagaaaaacgcTaataatcagcacgagaacgc	8	7	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37391000	C	C	37391000	1	2	55	0	1	0	0	0	0	0	0	0	9561	1537	53	5		5	MEIS2	15	37391000	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	3350667	37391000	65140392	774	61977											
TP53BP1	7158	broad.mit.edu	37	chr15	43720708	43720708	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcttctaattctgatgcTatcttgcaaattagtaaacg	5	7	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43720708	C	C	43720708	1	2	55	0	1	0	0	0	0	0	0	0	16507	1537	53	5		5	TP53BP1	15	43720708	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	6329708	43720708	58810684	775	61978											
SLC24A5	283652	broad.mit.edu	37	chr15	48414360	48414360	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagcaccagcttcttgttGtggggtcccgtgtcttaagg	13	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48414360	C	C	48414360	1	2	55	0	1	0	0	0	0	0	0	0	14583	1392	48	4		4	SLC24A5	15	48414360	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	4693652	48414360	54117032	776	61979											
MYEF2	50804	broad.mit.edu	37	chr15	48444035	48444035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaataatagggaaaactaaAtatgcacacacttcccactg	5	9	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48444035	G	G	48444035	1	3	55	0	1	0	0	0	0	0	0	0	10118	116	4	5		5	MYEF2	15	48444035	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	29675	48444035	54087357	777	61980											
SLC12A1	6557	broad.mit.edu	37	chr15	48513169	48513169	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctcttcattcgcctctccTggattgttggagaagctgga	11	10	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48513169	A	A	48513169	3	1	55	1	0	0	0	0	1	0	0	0	14495	1580	55	5	614	5	SLC12A1	15	48513169	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	69134	48513169	54018223	778	61981											
FBN1	2200	broad.mit.edu	37	chr15	48800965	48800965	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttacgaaggaaaccaatcTggatgaaaataattctgttt	8	6	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48800965	A	A	48800965	1	1	55	0	1	0	0	0	0	0	0	0	5759	1595	55	5		5	FBN1	15	48800965	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	287796	48800965	53730427	779	61982											
FBN1	2200	broad.mit.edu	37	chr15	48905060	48905060	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgatgtatttcccaaacTggaaaggtagaaaagtctta	9	5	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48905060	A	A	48905060	1	1	55	0	1	0	0	0	0	0	0	0	5759	1595	55	5		5	FBN1	15	48905060	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	104095	48905060	53626332	780	61983											
AP4E1	23431	broad.mit.edu	37	chr15	51237796	51237796	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatctttcctatagacaAaagttgaagcagggaggtat	10	5	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51237796	G	G	51237796	1	3	55	0	1	0	0	0	0	0	0	0	754	29	1	5		5	AP4E1	15	51237796	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2332736	51237796	51293596	781	61984											
MYO5A	4644	broad.mit.edu	37	chr15	52611497	52611498	+	Missense_Mutation	DNP	CC	AA	AA													tcaaccctgtgggcttcaccCcagacacgccctgaatcgtt							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52611498	AA	AA	52611497	3	1	55	1	0	0	0	0	1	0	0	0	10172	623	22	2	664	2	MYO5A	15	52611497	Missense_Mutation	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	1373701	52611497	49919895	782	61985											
CGNL1	84952	broad.mit.edu	37	chr15	57730396	57730399	+	Frame_Shift_Del	DEL	ACAT	-	-													cagaacggtgcctagcaggcAcatcgttttctgaaaatggg							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57730399	-	-	57730396	7	5	55	1	0	1	0	1	0	0	0	0	3334	159	6	0	201	0	CGNL1	15	57730396	Frame_Shift_Del	DEL	ACAT	TCGA-17-Z023-01A-01W-0746-08	5118899	57730396	44800996	783	61986											
CGNL1	84952	broad.mit.edu	37	chr15	57795358	57795358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattaattgtcaaagccagGgccaggcgggggctgccagg	15	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57795358	T	T	57795358	1	4	55	0	1	0	0	0	0	0	0	0	3334	1247	43	2		2	CGNL1	15	57795358	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	64962	57795358	44736034	784	61987											
CGNL1	84952	broad.mit.edu	37	chr15	57820832	57820832	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgcaccccagaaaaccatcCcagctgtctctcctcctaga	5	17	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57820832	G	G	57820832	1	3	55	0	1	0	0	0	0	0	0	0	3334	638	22	4		4	CGNL1	15	57820832	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	25474	57820832	44710560	785	61988											
TLN2	83660	broad.mit.edu	37	chr15	63044765	63044765	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcttctgtgctggctggGgcatttacacaaaacatgag	13	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63044765	A	A	63044765	1	1	55	0	1	0	0	0	0	0	0	0	16071	1247	43	4		4	TLN2	15	63044765	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5223933	63044765	39486627	786	61989											
RAB11A	8766	broad.mit.edu	37	chr15	66169874	66169874	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tataacatcagcgtaagtctCatggtttttaagttctgtga	8	6	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66169874	T	T	66169874	1	4	55	0	1	0	0	0	0	0	0	0	12999	841	29	4		4	RAB11A	15	66169874	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3125109	66169874	36361518	787	61990											
TBC1D21	161514	broad.mit.edu	37	chr15	74174180	74174180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactatcttctgcccccatGcaacttcttattccgagagg	7	13	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74174180	A	A	74174180	1	1	55	0	1	0	0	0	0	0	0	0	15729	1334	46	4		4	TBC1D21	15	74174180	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	8004306	74174180	28357212	788	61991											
RCN2	5955	broad.mit.edu	37	chr15	77240683	77240683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttcctttattctagggatAtaccaaacttcttattggat	5	8	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77240683	G	G	77240683	1	3	55	0	1	0	0	0	0	0	0	0	13288	464	16	5		5	RCN2	15	77240683	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3066503	77240683	25290709	789	61992											
ARNT2	9915	broad.mit.edu	37	chr15	80869073	80869073	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaaggctgagaagattGcgtgcaggcgggctgccctg	18	9	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80869073	A	A	80869073	1	1	55	0	1	0	0	0	0	0	0	0	970	1334	46	4		4	ARNT2	15	80869073	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3628390	80869073	21662319	790	61993											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84651148	84651148	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccattggtagcagagcctAtttgctgcccaacacatccg	9	13	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84651148	G	G	84651148	3	3	55	1	0	0	0	0	1	0	0	0	276	449	16	5	2846	5	ADAMTSL3	15	84651148	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3782075	84651148	17880244	791	61994											
AGBL1	123624	broad.mit.edu	37	chr15	87412530	87412530	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtccacgtgatgcccacCcctgaatgcacaatggcaca	10	14	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87412530	G	G	87412530	1	3	55	0	1	0	0	0	0	0	0	0	375	638	22	4		4	AGBL1	15	87412530	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2761382	87412530	15118862	792	61995											
NTRK3	4916	broad.mit.edu	37	chr15	88472412	88472412	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtcctgcagctgggaaaGtcactttaccctgtaataat	9	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88472412	A	A	88472412	1	1	55	0	1	0	0	0	0	0	0	0	10803	1044	36	4		4	NTRK3	15	88472412	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1059882	88472412	14058980	793	61996											
CIB1	10519	broad.mit.edu	37	chr15	90774105	90774105	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgtagccatgccctagGcccagaggcagcaggtcgga	13	14	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90774105	A	A	90774105	1	1	55	0	1	0	0	0	0	0	0	0	3451	1218	42	4		4	CIB1	15	90774105	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2301693	90774105	11757287	794	61997											
BLM	641	broad.mit.edu	37	chr15	91326038	91326038	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataactaaattttatgttTgggacttttttaggtttagc	7	3	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91326038	C	C	91326038	1	2	55	0	1	0	0	0	0	0	0	0	1451	1827	63	5		5	BLM	15	91326038	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	551933	91326038	11205354	795	61998											
FURIN	5045	broad.mit.edu	37	chr15	91419555	91419555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcgcctcaccgcccgcGgcacagccggctgcagaggg	14	18	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91419555	T	T	91419555	3	4	55	1	0	0	0	0	1	0	0	0	6159	1116	39	1	254	1	FURIN	15	91419555	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	93517	91419555	11111837	796	61999											
MYH11	4629	broad.mit.edu	37	chr16	15818778	15818778	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgggaactgagggacgcCacgtccttggccagcttaat	13	11	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15818778	T	T	15818778	2	4	55	1	0	0	0	0	0	0	0	1	10125	581	21	4		4	MYH11	16	15818778	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08		15818778	74535975	797	62000											
SMG1	23049	broad.mit.edu	37	chr16	18887705	18887705	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgataaacagcatgggctAcagcaacaacctgaaaaaca	7	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18887705	G	G	18887705	3	3	55	1	0	0	0	0	1	0	0	0	14909	391	14	5	9558	5	SMG1	16	18887705	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	3068927	18887705	71467048	798	62001											
GPRC5B	51704	broad.mit.edu	37	chr16	19873247	19873247	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcttttccccaagctgccaCtgggtctttttcccaagctg	8	14	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19873247	G	G	19873247	3	3	55	1	0	0	0	0	1	0	0	0	6791	565	20	4	140	4	GPRC5B	16	19873247	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	985542	19873247	70481506	799	62002											
APOB48R	55911	broad.mit.edu	37	chr16	28508735	28508735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttgggcaaggctgggaCtcgaaagaaaaggaagaggc	17	6	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28508735	A	A	28508735	3	1	55	1	0	0	0	0	1	0	0	0	788	564	20	3	2356	3	APOB48R	16	28508735	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	8635488	28508735	61846018	800	62003											
PRR14	78994	broad.mit.edu	37	chr16	30665950	30665950	+	Frame_Shift_Del	DEL	C	-	-													tgaccctctcctttcctcagCcccagatcctgctctggagc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30665950	-	-	30665950	7	5	55	1	0	1	0	1	0	0	0	0	12692	753	26	0	685	0	PRR14	16	30665950	Frame_Shift_Del	DEL	C	TCGA-17-Z023-01A-01W-0746-08	2157215	30665950	59688803	801	62004											
ITGAX	3687	broad.mit.edu	37	chr16	31372797	31372797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcagaacaaaaagcaGtgccaggcccaacccaggag	10	14	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31372797	T	T	31372797	1	4	55	0	1	0	0	0	0	0	0	0	7959	1044	36	3		3	ITGAX	16	31372797	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	706847	31372797	58981956	802	62005											
ITGAD	3681	broad.mit.edu	37	chr16	31429890	31429890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccatgatcagcaggtgcCcagtccctggccttcccctt	8	17	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31429890	A	A	31429890	1	1	55	0	1	0	0	0	0	0	0	0	7954	638	22	2		2	ITGAD	16	31429890	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	57093	31429890	58924863	803	62006											
VPS35	55737	broad.mit.edu	37	chr16	46696441	46696441	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaggaccaaccatcctcTagttgagcattttccaaagt	6	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46696441	C	C	46696441	1	2	55	0	1	0	0	0	0	0	0	0	17330	1537	53	5		5	VPS35	16	46696441	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	15266551	46696441	43658312	804	62007											
ABCC12	94160	broad.mit.edu	37	chr16	48138955	48138955	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctatgagggctctggctgtCcccagagcccagcaccatgc	11	15	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48138955	T	T	48138955	1	4	55	0	1	0	0	0	0	0	0	0	52	870	30	4		4	ABCC12	16	48138955	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1442514	48138955	42215798	805	62008											
ABCC12	94160	broad.mit.edu	37	chr16	48162426	48162426	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgaggctgtcactttgctCctctgggccagtggctccct	11	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48162426	T	T	48162426	3	4	55	1	0	0	0	0	1	0	0	0	52	864	30	4	2704	4	ABCC12	16	48162426	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	23471	48162426	42192327	806	62009											
GPR97	222487	broad.mit.edu	37	chr16	57712186	57712186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggtctgtggtccgcttGgccgtcaccattctggacat	11	12	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57712186	T	T	57712186	3	4	55	1	0	0	0	0	1	0	0	0	6786	1339	47	2	464	2	GPR97	16	57712186	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9549760	57712186	32642567	807	62010											
CNGB1	1258	broad.mit.edu	37	chr16	57937831	57937831	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacttcaccgtgctgtccaTgcagctgcggtagtaggtct	12	11	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57937831	C	C	57937831	3	2	55	1	0	0	0	0	1	0	0	0	3632	1464	51	5	1094	5	CNGB1	16	57937831	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	225645	57937831	32416922	808	62011											
PRSS54	221191	broad.mit.edu	37	chr16	58318599	58318599	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcacgaagattttcctcagGacactcatcgtcatgtgatt	7	10	4	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58318599	T	T	58318599	2	4	55	1	0	0	0	0	0	0	0	1	12739	1161	41	3		3	PRSS54	16	58318599	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	380768	58318599	32036154	809	62012											
HYDIN	54768	broad.mit.edu	37	chr16	71012832	71012832	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttacctcagcaggctcgtcTtctggcacttcctcagttat	7	14	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71012832	G	G	71012832	3	3	55	1	0	0	0	0	1	0	0	0	7537	1606	56	5	10970	5	HYDIN	16	71012832	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	12694233	71012832	19341921	810	62013											
ADAT1	23536	broad.mit.edu	37	chr16	75634175	75634175	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccaaacacctgcttccggAgtgtgctccaggcttcctgg	10	14	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75634175	T	T	75634175	3	4	55	1	0	0	0	0	1	0	0	0	284	304	11	5	64	5	ADAT1	16	75634175	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	4621343	75634175	14720578	811	62014											
BANP	54971	broad.mit.edu	37	chr16	88039567	88039567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaatcttggtagagagagCagtatgggaaggctgtgtga	15	3	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88039567	A	A	88039567	1	1	55	0	1	0	0	0	0	0	0	0	1315	725	25	3		3	BANP	16	88039567	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	12405392	88039567	2315186	812	62015											
P2RX5	5026	broad.mit.edu	37	chr17	3593336	3593336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcgaccaaggcccacccGtggcccccagtagccaagcc	9	19	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3593336	T	T	3593336	1	4	55	0	1	0	0	0	0	0	0	0	11437	1160	40	3		3	P2RX5	17	3593336	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08		3593336	77601874	813	62016											
ZZEF1	23140	broad.mit.edu	37	chr17	3945542	3945543	+	Intron	INS	-	AC	AC													atataaatatattgttttatINSacacacacacacatatatat					rs139361429	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	3945543	AC	AC	3945542	6	5	55	0	1	1	1	0	0	0	0	0	18384	1421	49	0		0	ZZEF1	17	3945542	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	352206	3945542	77249668	814	62017											
ZZEF1	23140	broad.mit.edu	37	chr17	3959437	3959438	+	Intron	INS	-	C	C													caggtaagagcctgccagaaINScccccccaggcaaactctcc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3959438	C	C	3959437	6	5	55	0	1	1	1	0	0	0	0	0	18384	58	2	0		0	ZZEF1	17	3959437	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	13895	3959437	77235773	815	62018											
NUP88	4927	broad.mit.edu	37	chr17	5314073	5314073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctgaaagtattatcacGttagtgggtgtctgcggctc	12	8	3	1	rs144076487		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5314073	T	T	5314073	3	4	55	1	0	0	0	0	1	0	0	0	10866	1136	40	3	1651	3	NUP88	17	5314073	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1354636	5314073	75881137	816	62019											
KIAA0753	9851	broad.mit.edu	37	chr17	6511817	6511817	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaagcatacctttgtcatCattcactccgtatccaatga	5	11	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6511817	T	T	6511817	1	4	55	0	1	0	0	0	0	0	0	0	8261	841	29	4		4	KIAA0753	17	6511817	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1197744	6511817	74683393	817	62020											
TP53	7157	broad.mit.edu	37	chr17	7578257	7578258	+	Nonsense_Mutation	DNP	CC	AA	AA													ctccacacgcaaatttccttCcactcggataagatgctgag							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7578258	AA	AA	7578257	4	1	55	1	0	0	0	0	0	1	0	0	16505	864	30	3	702	3	TP53	17	7578257	Nonsense_Mutation	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	1066440	7578257	73616953	818	62021											
WRAP53	55135	broad.mit.edu	37	chr17	7606167	7606167	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctacttcgatctggacccgtGagtggctgtgactccttcct	10	13	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7606167	T	T	7606167	1	4	55	0	1	0	0	0	0	0	0	0	17527	1305	45	3		3	WRAP53	17	7606167	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	27910	7606167	73589043	819	62022											
ARHGEF15	22899	broad.mit.edu	37	chr17	8224231	8224231	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacaggggaacacgaaaggAggaggcaccttcgccagaac	13	11	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8224231	G	G	8224231	3	3	55	1	0	0	0	0	1	0	0	0	900	295	11	5	2504	5	ARHGEF15	17	8224231	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	618064	8224231	72970979	820	62023											
MYH8	4626	broad.mit.edu	37	chr17	10302695	10302695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatagaagtgttgtaaGtaaacttgtctgctcagtct	9	7	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10302695	T	T	10302695	1	4	55	0	1	0	0	0	0	0	0	0	10135	1044	36	3		3	MYH8	17	10302695	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2078464	10302695	70892515	821	62024											
MYH8	4626	broad.mit.edu	37	chr17	10322030	10322030	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggggcctcctggcgctttTtgcctctgtaggcagccacc	13	15	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10322030	C	C	10322030	3	2	55	1	0	0	0	0	1	0	0	0	10135	1841	64	5	5514	5	MYH8	17	10322030	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	19335	10322030	70873180	822	62025											
MYH2	4620	broad.mit.edu	37	chr17	10435251	10435251	+	Intron	DEL	G	-	-													tattgtgtggttgatgcaatGggatgaaaccttggcagtga							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10435251	-	-	10435251	6	5	55	0	1	1	0	1	0	0	0	0	10129	1363	47	0		0	MYH2	17	10435251	Intron	DEL	G	TCGA-17-Z023-01A-01W-0746-08	113221	10435251	70759959	823	62026											
DNAH9	1770	broad.mit.edu	37	chr17	11550666	11550666	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcgcgatctcagctcacTacaacccctacctcctgggt	9	16	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11550666	A	A	11550666	1	1	55	0	1	0	0	0	0	0	0	0	4648	1537	53	5		5	DNAH9	17	11550666	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1115415	11550666	69644544	824	62027											
TOM1L2	146691	broad.mit.edu	37	chr17	17752188	17752188	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acccttctgtgggaggagcaGagaaaatgaaattagggcac	13	7	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17752188	C	C	17752188	1	2	55	0	1	0	0	0	0	0	0	0	16476	957	33	4		4	TOM1L2	17	17752188	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6201522	17752188	63443022	825	62028											
SMCR8	140775	broad.mit.edu	37	chr17	18226352	18226352	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccaccccatgctcaggtttGactatgtccccagctttttg	8	14	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18226352	C	C	18226352	3	2	55	1	0	0	0	0	1	0	0	0	14906	1290	45	4	2788	4	SMCR8	17	18226352	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	474164	18226352	62968858	826	62029											
CDK5R1	8851	broad.mit.edu	37	chr17	30815606	30815606	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggattcaatgcatttttAagaatttattattaaatcag	5	4	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30815606	C	C	30815606	1	2	55	0	1	0	0	0	0	0	0	0	3173	377	13	5		5	CDK5R1	17	30815606	3'UTR	SNP	A	TCGA-17-Z023-01A-01W-0746-08	12589254	30815606	50379604	827	62030											
ACCN1	40	broad.mit.edu	37	chr17	31587576	31587576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatggatcgctgccgccaGgggggcggggaatacgaggt	18	9	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31587576	T	T	31587576	1	4	55	0	1	0	0	0	0	0	0	0	128	1015	35	2		2	ACCN1	17	31587576	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	771970	31587576	49607634	828	62031											
ACCN1	40	broad.mit.edu	37	chr17	32338312	32338312	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctttctgttttcatgccCgtgccttcctcctacctgcc	6	18	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32338312	T	T	32338312	1	4	55	0	1	0	0	0	0	0	0	0	128	667	23	4		4	ACCN1	17	32338312	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	750736	32338312	48856898	829	62032											
CCT6B	10693	broad.mit.edu	37	chr17	33266325	33266327	+	In_Frame_Del	DEL	CAA	-	-													gcaagggttaacacactcctCaataaaagtgaacttttctt							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33266327	-	-	33266325	7	5	55	1	0	1	0	1	0	0	0	0	2988	835	29	0	522	0	CCT6B	17	33266325	In_Frame_Del	DEL	CAA	TCGA-17-Z023-01A-01W-0746-08	928013	33266325	47928885	830	62033											
SLFN5	162394	broad.mit.edu	37	chr17	33586427	33586427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgagacttgtcaagtgattGgatgtgaaaaagagaaaata	11	2	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33586427	C	C	33586427	3	2	55	1	0	0	0	0	1	0	0	0	14851	1349	47	4	720	4	SLFN5	17	33586427	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	320102	33586427	47608783	831	62034											
IGFBP4	3487	broad.mit.edu	37	chr17	38612887	38612887	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgctactcctgtgctctgGaggctgcagagctgacccag	12	14	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38612887	C	C	38612887	1	2	55	0	1	0	0	0	0	0	0	0	7651	1189	41	4		4	IGFBP4	17	38612887	3'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5026460	38612887	42582323	832	62035											
KRTAP1-1	81851	broad.mit.edu	37	chr17	39197230	39197230	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctggcagcaggatggGggtgtgcagctcaccacgca	16	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39197230	T	T	39197230	2	4	55	1	0	0	0	0	0	0	0	1	8573	1219	43	2		2	KRTAP1-1	17	39197230	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	584343	39197230	41997980	833	62036											
JUP	3728	broad.mit.edu	37	chr17	39739451	39739452	+	Intron	INS	-	G	G													tggggccgtgagagtgccatINSggggggggcggactaagggg					rs139816255	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39739452	G	G	39739451	6	5	55	0	1	1	1	0	0	0	0	0	8042	1479	51	0		0	JUP	17	39739451	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	542221	39739451	41455759	834	62037											
RAB5C	5878	broad.mit.edu	37	chr17	40282250	40282250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggggctgccaccacagaCgcatttagtccctaatgcag	11	12	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40282250	T	T	40282250	1	4	55	0	1	0	0	0	0	0	0	0	13058	551	19	4		4	RAB5C	17	40282250	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	542799	40282250	40912960	835	62038											
ITGA2B	3674	broad.mit.edu	37	chr17	42452120	42452120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcagcacaaactgatcCagaggcctctggacaggttg	12	11	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42452120	A	A	42452120	2	1	55	1	0	0	0	0	0	0	0	1	7946	581	21	2		2	ITGA2B	17	42452120	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2169870	42452120	38743090	836	62039											
HEXIM1	10614	broad.mit.edu	37	chr17	43227346	43227346	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggacggcagcgagtttctGcagcgggacttctcggagac	17	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43227346	A	A	43227346	2	1	55	1	0	0	0	0	0	0	0	1	7143	1306	46	4		4	HEXIM1	17	43227346	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	775226	43227346	37967864	837	62040											
NPEPPS	9520	broad.mit.edu	37	chr17	45662869	45662869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttatttcttaaagaatGtaattgaccggaaaccatac	5	6	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45662869	T	T	45662869	3	4	55	1	0	0	0	0	1	0	0	0	10670	1377	48	3	674	3	NPEPPS	17	45662869	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2435523	45662869	35532341	838	62041											
TRIM25	7706	broad.mit.edu	37	chr17	54973413	54973413	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaatttgacccagacaaaTaaaaggatgttttaatttga	7	4	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54973413	C	C	54973413	1	2	55	0	1	0	0	0	0	0	0	0	16623	1421	49	5		5	TRIM25	17	54973413	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	9310544	54973413	26221797	839	62042											
OR4D1	26689	broad.mit.edu	37	chr17	56233444	56233444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctagtaatttgcagggaGtaaactttaagtaagttgac	10	5	0	1	rs140837404	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56233444	A	A	56233444	2	1	55	1	0	0	0	0	0	0	0	1	11147	1043	36	4		4	OR4D1	17	56233444	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1260031	56233444	24961766	840	62043											
YPEL2	388403	broad.mit.edu	37	chr17	57465744	57465744	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactcagtgtgagtgcctctGaatggtacattccttgtggg	12	8	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57465744	A	A	57465744	1	1	55	0	1	0	0	0	0	0	0	0	17617	1305	45	4		4	YPEL2	17	57465744	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1232300	57465744	23729466	841	62044											
MAP3K3	4215	broad.mit.edu	37	chr17	61714450	61714450	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgtgtgtagagtgtcgatGttgcagctttcaacaaggtc	13	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61714450	C	C	61714450	1	2	55	0	1	0	0	0	0	0	0	0	9343	1392	48	4		4	MAP3K3	17	61714450	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	4248706	61714450	19480760	842	62045											
CSHL1	1444	broad.mit.edu	37	chr17	61987298	61987298	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcaagagaaggagagacCaagcgcttgggcactgttcc	14	9	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61987298	T	T	61987298	1	4	55	0	1	0	0	0	0	0	0	0	3976	609	21	4		4	CSHL1	17	61987298	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	272848	61987298	19207912	843	62046											
MYL12B	103910	broad.mit.edu	37	chr18	3277517	3277517	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttagaaaatatttgcttaaGaataattttgtaagcatatg	6	2	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3277517	C	C	3277517	1	2	55	0	1	0	0	0	0	0	0	0	10140	957	33	4		4	MYL12B	18	3277517	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08		3277517	74799731	844	62047											
L3MBTL4	91133	broad.mit.edu	37	chr18	6020741	6020741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggacgctcctaggttaCtggcttgagcaattggttag	12	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6020741	A	A	6020741	1	1	55	0	1	0	0	0	0	0	0	0	8666	580	20	3		3	L3MBTL4	18	6020741	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2743224	6020741	72056507	845	62048											
PTPRM	5797	broad.mit.edu	37	chr18	7888352	7888352	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcagaactggccattagtActttctggcctaacttttat	9	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7888352	C	C	7888352	3	2	55	1	0	0	0	0	1	0	0	0	12914	391	14	5	455	5	PTPRM	18	7888352	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1867611	7888352	70188896	846	62049											
KIAA0802	23255	broad.mit.edu	37	chr18	8813219	8813219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaagaaggaattcttgtgGaggatagagcaggtaaggag	16	3	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8813219	T	T	8813219	3	4	55	1	0	0	0	0	1	0	0	0	8264	1183	41	3	2885	3	KIAA0802	18	8813219	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	924867	8813219	69264029	847	62050											
ANKRD12	23253	broad.mit.edu	37	chr18	9258375	9258375	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accattcacagcagtcaactCaaccagaaatgcataaatat	4	11	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9258375	G	G	9258375	3	3	55	1	0	0	0	0	1	0	0	0	640	827	29	4	5140	4	ANKRD12	18	9258375	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	445156	9258375	68818873	848	62051											
CDH2	1000	broad.mit.edu	37	chr18	25531984	25531984	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagcccaaattggtttGcagcctatgccaaagcctcc	8	14	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25531984	C	C	25531984	1	2	55	0	1	0	0	0	0	0	0	0	3135	1334	46	4		4	CDH2	18	25531984	3'UTR	SNP	G	TCGA-17-Z023-01A-01W-0746-08	16273609	25531984	52545264	849	62052											
CELF4	56853	broad.mit.edu	37	chr18	34994298	34994298	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacccattcattctttcatcCatccatctatctacccatcc	0	17	5	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34994298	T	T	34994298	1	4	55	0	1	0	0	0	0	0	0	0	3248	609	21	4		4	CELF4	18	34994298	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	9462314	34994298	43082950	850	62053											
KIAA1632	57724	broad.mit.edu	37	chr18	43505741	43505744	+	Frame_Shift_Del	DEL	ACAC	-	-													aattcagtccttcaagaataAcacaggccagtttattcttc							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43505744	-	-	43505741	7	5	55	1	0	1	0	1	0	0	0	0	8319	43	2	0	5182	0	KIAA1632	18	43505741	Frame_Shift_Del	DEL	ACAC	TCGA-17-Z023-01A-01W-0746-08	8511443	43505741	34571507	851	62054											
C18orf32	497661	broad.mit.edu	37	chr18	47009932	47009932	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccctttcactgctcttattCaaggcatgtgaatgttctta	6	11	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47009932	G	G	47009932	1	3	55	0	1	0	0	0	0	0	0	0	1919	841	29	4		4	C18orf32	18	47009932	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3504191	47009932	31067316	852	62055											
MBD1	4152	broad.mit.edu	37	chr18	47800735	47800735	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagggctgctggggtggggGgaatgggtggtgctgtcaac	22	5	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47800735	A	A	47800735	1	1	55	0	1	0	0	0	0	0	0	0	9434	1247	43	4		4	MBD1	18	47800735	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	790803	47800735	30276513	853	62056											
MAPK4	5596	broad.mit.edu	37	chr18	48181550	48181550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcactgcctcccagggaCcttaagatgtttgcagtcac	9	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48181550	A	A	48181550	1	1	55	0	1	0	0	0	0	0	0	0	9372	522	18	3		3	MAPK4	18	48181550	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	380815	48181550	29895698	854	62057											
DCC	1630	broad.mit.edu	37	chr18	50196459	50196459	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtgttcttcaaacatcAaagagtcagcattcttggac	8	8	5	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50196459	G	G	50196459	1	3	55	0	1	0	0	0	0	0	0	0	4315	145	5	5		5	DCC	18	50196459	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2014909	50196459	27880789	855	62058											
MC4R	4160	broad.mit.edu	37	chr18	58039336	58039336	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccacagccaagctgcagaTgaaaaagtacatgggtgaat	11	8	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58039336	A	A	58039336	3	1	55	1	0	0	0	0	1	0	0	0	9459	1464	51	5	755	5	MC4R	18	58039336	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	7842877	58039336	20037912	856	62059											
CDH20	28316	broad.mit.edu	37	chr18	59206470	59206470	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaccatcaaagccattttgActccagaaacgaacagttca	5	12	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59206470	T	T	59206470	1	4	55	0	1	0	0	0	0	0	0	0	3136	290	10	5		5	CDH20	18	59206470	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1167134	59206470	18870778	857	62060											
ZNF407	55628	broad.mit.edu	37	chr18	72628210	72628210	+	Intron	SNP	A	C	C													tggtatggtgaagttgtgtgAagcattggttcgaatcggga							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72628210	C	C	72628210	1	2	55	0	1	0	0	0	0	0	0	0	18014	261	9	5		5	ZNF407	18	72628210	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	13421740	72628210	5449038	858	62061	290	2									
ZNF407	55628	broad.mit.edu	37	chr18	72628213	72628213	+	Intron	SNP	C	T	T													tatggtgaagttgtgtgaagCattggttcgaatcgggagtg							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72628213	T	T	72628213	1	4	55	0	1	0	0	0	0	0	0	0	18014	725	25	4		4	ZNF407	18	72628213	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3	72628213	5449035	859	62062	290	2									
ZADH2	284273	broad.mit.edu	37	chr18	72913517	72913517	+	Frame_Shift_Del	DEL	A	-	-													atctccaaggtccacctcacAaaccaggtctccgctcacac							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72913517	-	-	72913517	7	5	55	1	0	1	0	1	0	0	0	0	17638	130	5	0	149	0	ZADH2	18	72913517	Frame_Shift_Del	DEL	A	TCGA-17-Z023-01A-01W-0746-08	285304	72913517	5163731	860	62063											
ANKRD24	170961	broad.mit.edu	37	chr19	4210401	4210402	+	Intron	INS	-	A	A													cggagatttgggcgtgggccINSagcctgggtggggtcaatgc					rs138484224	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4210402	A	A	4210401	6	5	55	0	1	1	1	0	0	0	0	0	653	609	21	0		0	ANKRD24	19	4210401	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08		4210401	54918582	861	62064											
ELAVL1	1994	broad.mit.edu	37	chr19	8032642	8032642	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgcctccgaccgtttgtCaaaccggataaacgcaaccc	7	15	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8032642	G	G	8032642	3	3	55	1	0	0	0	0	1	0	0	0	5091	826	29	4	525	4	ELAVL1	19	8032642	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3822241	8032642	51096341	862	62065											
LASS4	79603	broad.mit.edu	37	chr19	8326502	8326502	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggaaggccatgccagttAgaaattcttaggactggggg	15	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8326502	C	C	8326502	1	2	55	0	1	0	0	0	0	0	0	0	8713	435	15	5		5	LASS4	19	8326502	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	293860	8326502	50802481	863	62066											
MUC16	94025	broad.mit.edu	37	chr19	8977077	8977078	+	Intron	INS	-	C	C													ttctctcaccctgattagcaINScctggcagactcactggatg					rs144911804	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8977078	C	C	8977077	6	5	55	0	1	1	1	0	0	0	0	0	10067	174	6	0		0	MUC16	19	8977077	Intron	INS	-	TCGA-17-Z023-01A-01W-0746-08	650575	8977077	50151906	864	62067											
MUC16	94025	broad.mit.edu	37	chr19	8987284	8987284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtccgccatgtagcgcaGgttgttgatggtgaagttca	13	8	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8987284	T	T	8987284	3	4	55	1	0	0	0	0	1	0	0	0	10067	991	35	2	1788	2	MUC16	19	8987284	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	10207	8987284	50141699	865	62068											
MUC16	94025	broad.mit.edu	37	chr19	9067655	9067655	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcagaagtggtggtcccCacattggttactgctatgtt	10	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9067655	T	T	9067655	2	4	55	1	0	0	0	0	0	0	0	1	10067	581	21	4		4	MUC16	19	9067655	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	80371	9067655	50061328	866	62069											
MUC16	94025	broad.mit.edu	37	chr19	9075271	9075271	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactgggcaaggaatgagcTggatattctcttagaggagg	15	5	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9075271	C	C	9075271	3	2	55	1	0	0	0	0	1	0	0	0	10067	1580	55	5	31676	5	MUC16	19	9075271	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	7616	9075271	50053712	867	62070											
MUC16	94025	broad.mit.edu	37	chr19	9083779	9083779	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtagtctctgggactgtgCcaagactatccgaagctata	12	9	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9083779	T	T	9083779	3	4	55	1	0	0	0	0	1	0	0	0	10067	739	26	4	35823	4	MUC16	19	9083779	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	8508	9083779	50045204	868	62071											
MUC16	94025	broad.mit.edu	37	chr19	9088114	9088114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagggttggaagtcccCcttctgatgcctccaatgat	11	11	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9088114	A	A	9088114	3	1	55	1	0	0	0	0	1	0	0	0	10067	623	22	2	40158	2	MUC16	19	9088114	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4335	9088114	50040869	869	62072											
MUC16	94025	broad.mit.edu	37	chr19	9089538	9089538	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgggctttgtctttgttgaGatttcaggagtccctgtggt	13	7	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9089538	C	C	9089538	3	2	55	1	0	0	0	0	1	0	0	0	10067	932	33	4	41582	4	MUC16	19	9089538	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1424	9089538	50039445	870	62073											
OR7D2	162998	broad.mit.edu	37	chr19	9293603	9293603	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactcaacatggcttttatcGtgcccgatgttaatgcacgt	8	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9293603	A	A	9293603	1	1	55	0	1	0	0	0	0	0	0	0	11313	1160	40	4		4	OR7D2	19	9293603	5'Flank	SNP	G	TCGA-17-Z023-01A-01W-0746-08	204065	9293603	49835380	871	62074											
COL5A3	50509	broad.mit.edu	37	chr19	10080477	10080477	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtggtcataggtccaccCtctcctgatggccccactgt	10	14	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10080477	T	T	10080477	1	4	55	0	1	0	0	0	0	0	0	0	3730	696	24	4		4	COL5A3	19	10080477	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	786874	10080477	49048506	872	62075											
COL5A3	50509	broad.mit.edu	37	chr19	10099656	10099656	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaggctgtccttggctgTgcagctccaaaccccagtcc	10	14	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10099656	G	G	10099656	1	3	55	0	1	0	0	0	0	0	0	0	3730	1711	59	5		5	COL5A3	19	10099656	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	19179	10099656	49029327	873	62076											
ILF3	3609	broad.mit.edu	37	chr19	10789315	10789315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatcagtcaacgaccccccgGacgttctggacaggcagaaa	10	13	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10789315	T	T	10789315	3	4	55	1	0	0	0	0	1	0	0	0	7782	1174	41	3	604	3	ILF3	19	10789315	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	689659	10789315	48339668	874	62077											
ZNF653	115950	broad.mit.edu	37	chr19	11608932	11608932	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgccgggagcaagagaaTgagggagccaaggacactgc	15	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11608932	A	A	11608932	1	1	55	0	1	0	0	0	0	0	0	0	18193	1479	51	5		5	ZNF653	19	11608932	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	819617	11608932	47520051	875	62078											
CNN1	1264	broad.mit.edu	37	chr19	11651957	11651957	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatcgagggggtgacaggcCgtcgcatcggcaacaacttc	15	11	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11651957	T	T	11651957	3	4	55	1	0	0	0	0	1	0	0	0	3641	652	23	4	136	4	CNN1	19	11651957	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	43025	11651957	47477026	876	62079											
ZNF69	7620	broad.mit.edu	37	chr19	12016301	12016301	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaagaccttatgaatgtaaGatatgtgggaaaggcttttg	12	3	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12016301	A	A	12016301	1	1	55	0	1	0	0	0	0	0	0	0	18222	957	33	4		4	ZNF69	19	12016301	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	364344	12016301	47112682	877	62080											
ZNF490	57474	broad.mit.edu	37	chr19	12691673	12691673	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaactctttcgtgcaactGaaggtaacttgaagaattga	10	6	1	5			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12691673	A	A	12691673	4	1	55	1	0	0	0	0	0	1	0	0	18068	1299	45	4	377	4	ZNF490	19	12691673	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	675372	12691673	46437310	878	62081											
NFIX	4784	broad.mit.edu	37	chr19	13184748	13184748	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaacagcatcagggcccaaCttctccctggcggacctgga	11	15	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13184748	G	G	13184748	3	3	55	1	0	0	0	0	1	0	0	0	10469	564	20	4	744	4	NFIX	19	13184748	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	493075	13184748	45944235	879	62082											
ZSWIM4	65249	broad.mit.edu	37	chr19	13941649	13941649	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgccagctcctggacgcgGcagtcaccgcctacatcacc	9	18	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13941649	A	A	13941649	3	1	55	1	0	0	0	0	1	0	0	0	18372	1203	42	4	2805	4	ZSWIM4	19	13941649	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	756901	13941649	45187334	880	62083											
NWD1	284434	broad.mit.edu	37	chr19	16860107	16860107	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggatggctgcctggacgcTgatgcccagaaccttctcag	13	13	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16860107	G	G	16860107	2	3	55	1	0	0	0	0	0	0	0	1	10876	1567	55	5		5	NWD1	19	16860107	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2918458	16860107	42268876	881	62084											
SIN3B	23309	broad.mit.edu	37	chr19	16974633	16974633	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctgctgtggccgggtcCcccggcatgtgcctgttccc	14	15	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16974633	T	T	16974633	1	4	55	0	1	0	0	0	0	0	0	0	14439	638	22	4		4	SIN3B	19	16974633	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	114526	16974633	42154350	882	62085											
SIN3B	23309	broad.mit.edu	37	chr19	16974672	16974672	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttctccatgggacatgcAtcctgatcctcctccactgc	6	18	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16974672	T	T	16974672	1	4	55	0	1	0	0	0	0	0	0	0	14439	232	8	5		5	SIN3B	19	16974672	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	39	16974672	42154311	883	62086											
JAK3	3718	broad.mit.edu	37	chr19	17949054	17949054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagactgaggtatcgcctcaTttcccagggcctcttaccca	8	15	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17949054	A	A	17949054	1	1	55	0	1	0	0	0	0	0	0	0	8009	1508	52	5		5	JAK3	19	17949054	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	974382	17949054	41179929	884	62087											
ZNF208	7757	broad.mit.edu	37	chr19	22157415	22157415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttgaaatactttgctctGtgtagttgtcaaactctggt	9	7	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22157415	T	T	22157415	3	4	55	1	0	0	0	0	1	0	0	0	17892	1386	48	3	3425	3	ZNF208	19	22157415	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	4208361	22157415	36971568	885	62088											
ZNF257	113835	broad.mit.edu	37	chr19	22255680	22255680	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcattgcctggacactgcaCagcagaatttatatagggat	11	8	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22255680	G	G	22255680	3	3	55	1	0	0	0	0	1	0	0	0	17926	479	17	4	79	4	ZNF257	19	22255680	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	98265	22255680	36873303	886	62089											
ZNF99	7652	broad.mit.edu	37	chr19	22939299	22939299	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcctatgtttagtaaggcGtgagaaatggctaaaagctt	10	5	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22939299	A	A	22939299	3	1	55	1	0	0	0	0	1	0	0	0	18333	1145	40	4	244	4	ZNF99	19	22939299	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	683619	22939299	36189684	887	62090											
C19orf2	8725	broad.mit.edu	37	chr19	30476239	30476239	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttcttttaaagtaatAgttgtttcttgtaaacatat	6	3	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30476239	T	T	30476239	1	4	55	0	1	0	0	0	0	0	0	0	1930	435	15	5		5	C19orf2	19	30476239	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	7536940	30476239	28652744	888	62091											
ZNF507	22847	broad.mit.edu	37	chr19	32873969	32873969	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaataaggaccacaatAcagctctaaacacaaattag	5	10	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32873969	G	G	32873969	3	3	55	1	0	0	0	0	1	0	0	0	18080	391	14	5	2860	5	ZNF507	19	32873969	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	2397730	32873969	26255014	889	62092											
DMKN	93099	broad.mit.edu	37	chr19	35989865	35989865	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactctgccatggcctccaCgctcatgaagggcccagcag	11	15	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35989865	T	T	35989865	1	4	55	0	1	0	0	0	0	0	0	0	4622	551	19	4		4	DMKN	19	35989865	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3115896	35989865	23139118	890	62093											
KIRREL2	84063	broad.mit.edu	37	chr19	36353215	36353215	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggacccctcaaattctaAgactccctaaagccagggag	8	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36353215	T	T	36353215	1	4	55	0	1	0	0	0	0	0	0	0	8396	87	3	5		5	KIRREL2	19	36353215	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	363350	36353215	22775768	891	62094											
APLP1	333	broad.mit.edu	37	chr19	36369001	36369001	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagacacccccatgaccCttccaaaaggtgagtgtctc	8	15	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36369001	T	T	36369001	3	4	55	1	0	0	0	0	1	0	0	0	780	681	24	4	1620	4	APLP1	19	36369001	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	15786	36369001	22759982	892	62095											
NFKBID	84807	broad.mit.edu	37	chr19	36387460	36387460	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaggccacaggagaagTcaggttgggctcctggttcc	14	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36387460	A	A	36387460	1	1	55	0	1	0	0	0	0	0	0	0	10474	1682	58	5		5	NFKBID	19	36387460	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	18459	36387460	22741523	893	62096											
ZFP14	57677	broad.mit.edu	37	chr19	36831961	36831961	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacattccttacattcaTagggtttttcacccgtatga	5	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36831961	C	C	36831961	3	2	55	1	0	0	0	0	1	0	0	0	17765	1406	49	5	838	5	ZFP14	19	36831961	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	444501	36831961	22297022	894	62097											
ZFP82	284406	broad.mit.edu	37	chr19	36884638	36884638	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgaaggccatcccacattCcttacattcatacggttttt	5	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36884638	A	A	36884638	4	1	55	1	0	0	0	0	0	1	0	0	17779	864	30	3	998	3	ZFP82	19	36884638	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	52677	36884638	22244345	895	62098											
ZNF571	51276	broad.mit.edu	37	chr19	38055973	38055973	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacgaataaaggcctttcCacattccttacattcaaagg	5	11	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38055973	A	A	38055973	4	1	55	1	0	0	0	0	0	1	0	0	18130	603	21	2	476	2	ZNF571	19	38055973	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1171335	38055973	21073010	896	62099											
HNRNPL	3191	broad.mit.edu	37	chr19	39329420	39329420	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggaacacacctgccacaTcccatttctgtgtgagtcaa	8	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39329420	A	A	39329420	1	1	55	0	1	0	0	0	0	0	0	0	7337	1450	50	5		5	HNRNPL	19	39329420	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1273447	39329420	19799563	897	62100											
LRFN1	57622	broad.mit.edu	37	chr19	39805953	39805953	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcgagaggagggcCgaggagaagggtcctggagc	23	8	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39805953	A	A	39805953	2	1	55	1	0	0	0	0	0	0	0	1	9024	639	23	1		1	LRFN1	19	39805953	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	476533	39805953	19323030	898	62101											
PLEKHG2	64857	broad.mit.edu	37	chr19	39913447	39913448	+	Missense_Mutation	DNP	GC	AT	AT													gcgaaaccctcacattccaaGccctgcccagccgggactct							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	39913448	AT	AT	39913447	3	1	55	1	0	0	0	0	1	0	0	0	12164	971	34	4	1819	4	PLEKHG2	19	39913447	Missense_Mutation	DNP	GC	TCGA-17-Z023-01A-01W-0746-08	107494	39913447	19215536	899	62102											
LGALS14	56891	broad.mit.edu	37	chr19	40196769	40196769	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcaccctcaagtcttgttTtcattttctgagttgaaaat	5	8	5	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40196769	A	A	40196769	1	1	55	0	1	0	0	0	0	0	0	0	8813	1856	64	5		5	LGALS14	19	40196769	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	283322	40196769	18932214	900	62103											
FCGBP	8857	broad.mit.edu	37	chr19	40408112	40408112	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccgcacagagctcgtagtGactgttcggagggcactcca	13	12	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40408112	C	C	40408112	3	2	55	1	0	0	0	0	1	0	0	0	5835	1290	45	4	11720	4	FCGBP	19	40408112	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	211343	40408112	18720871	901	62104											
PLD3	23646	broad.mit.edu	37	chr19	40884006	40884006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaggccattttcctgaggGactgggactccccttacagc	12	12	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40884006	T	T	40884006	3	4	55	1	0	0	0	0	1	0	0	0	12142	1174	41	3	1441	3	PLD3	19	40884006	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	475894	40884006	18244977	902	62105											
SPTBN4	57731	broad.mit.edu	37	chr19	41078201	41078201	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgggcaggtgggctggGccccttccccagatctctga	15	12	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41078201	A	A	41078201	1	1	55	0	1	0	0	0	0	0	0	0	15239	1218	42	4		4	SPTBN4	19	41078201	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	194195	41078201	18050782	903	62106											
CYP2A13	1553	broad.mit.edu	37	chr19	41597911	41597911	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacaggcccattcaaattaGccctcgtcataataatcctt	4	13	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41597911	C	C	41597911	1	2	55	0	1	0	0	0	0	0	0	0	4194	986	34	4		4	CYP2A13	19	41597911	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	519710	41597911	17531072	904	62107											
CEACAM5	1048	broad.mit.edu	37	chr19	42218708	42218708	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcccccacaccgagcagGcagcctcgcagtctctgaga	10	17	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42218708	A	A	42218708	1	1	55	0	1	0	0	0	0	0	0	0	3225	1218	42	4		4	CEACAM5	19	42218708	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	620797	42218708	16910275	905	62108											
ARHGEF1	9138	broad.mit.edu	37	chr19	42396215	42396215	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagagaccttcaagctgcCccaaccctgcaatccctgtt	8	15	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42396215	T	T	42396215	1	4	55	0	1	0	0	0	0	0	0	0	895	638	22	4		4	ARHGEF1	19	42396215	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	177507	42396215	16732768	906	62109											
ATP1A3	478	broad.mit.edu	37	chr19	42490150	42490150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccggatcaccagggcttGctgaggtgggatggagtaat	15	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42490150	T	T	42490150	3	4	55	1	0	0	0	0	1	0	0	0	1134	1333	46	3	2641	3	ATP1A3	19	42490150	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	93935	42490150	16638833	907	62110											
PSG11	5680	broad.mit.edu	37	chr19	43519394	43519394	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagcttttgtcctgatagctGaaacttcccattaattgtcc	7	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43519394	A	A	43519394	4	1	55	1	0	0	0	0	0	1	0	0	12760	1299	45	4	177	4	PSG11	19	43519394	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1029244	43519394	15609589	908	62111											
ZNF233	353355	broad.mit.edu	37	chr19	44778388	44778388	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatctctcatcttcaggcCcatcagagagttcacaaagg	8	12	6	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44778388	T	T	44778388	2	4	55	1	0	0	0	0	0	0	0	1	17912	610	22	4		4	ZNF233	19	44778388	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1258994	44778388	14350595	909	62112											
ZNF233	353355	broad.mit.edu	37	chr19	44778566	44778566	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttcaagcccatcagagaGtccacacaggagagaaacca	8	12	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44778566	A	A	44778566	3	1	55	1	0	0	0	0	1	0	0	0	17912	1029	36	4	1767	4	ZNF233	19	44778566	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	178	44778566	14350417	910	62113											
CD3EAP	10849	broad.mit.edu	37	chr19	45912708	45912708	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtctggggaggaggcTcccacaggccgggacaagaa	16	10	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45912708	G	G	45912708	2	3	55	1	0	0	0	0	0	0	0	1	3042	1538	54	5		5	CD3EAP	19	45912708	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1134142	45912708	13216275	911	62114											
C5AR1	728	broad.mit.edu	37	chr19	47823367	47823367	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcggggccgcctgcagcatCctgccctccctcatcctgct	11	19	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47823367	G	G	47823367	3	3	55	1	0	0	0	0	1	0	0	0	2304	845	30	4	338	4	C5AR1	19	47823367	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1910659	47823367	11305616	912	62115											
CRX	1406	broad.mit.edu	37	chr19	48343009	48343009	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctcccatggtgccccagCtagggggcccggctcttagc	12	15	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48343009	G	G	48343009	3	3	55	1	0	0	0	0	1	0	0	0	3934	796	28	4	695	4	CRX	19	48343009	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	519642	48343009	10785974	913	62116											
LIG1	3978	broad.mit.edu	37	chr19	48647110	48647110	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcaacagggaccggagGgggacagtctgaaaagggag	20	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48647110	A	A	48647110	1	1	55	0	1	0	0	0	0	0	0	0	8853	1247	43	4		4	LIG1	19	48647110	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	304101	48647110	10481873	914	62117											
TRPM4	54795	broad.mit.edu	37	chr19	49686403	49686403	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcctcgggcaggccccctgGagcgacctgcttctttgggc	15	15	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49686403	C	C	49686403	3	2	55	1	0	0	0	0	1	0	0	0	16713	1183	41	4	1723	4	TRPM4	19	49686403	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1039293	49686403	9442580	915	62118											
CCDC155	147872	broad.mit.edu	37	chr19	49901202	49901202	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggggaaatgagtcaggggCtgtggacagtgacctgaacc	16	9	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49901202	T	T	49901202	1	4	55	0	1	0	0	0	0	0	0	0	2815	812	28	4		4	CCDC155	19	49901202	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	214799	49901202	9227781	916	62119											
CCDC155	147872	broad.mit.edu	37	chr19	49916136	49916136	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accttttgtatatggggtctGggaccggcgggggagacagt	17	7	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49916136	C	C	49916136	1	2	55	0	1	0	0	0	0	0	0	0	2815	1363	47	4		4	CCDC155	19	49916136	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	14934	49916136	9212847	917	62120											
SHANK1	50944	broad.mit.edu	37	chr19	51191454	51191454	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctctccctccgacccttCataccaccgcctccctgggc	5	22	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51191454	T	T	51191454	1	4	55	0	1	0	0	0	0	0	0	0	14377	841	29	4		4	SHANK1	19	51191454	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1275318	51191454	7937529	918	62121											
SIGLEC12	89858	broad.mit.edu	37	chr19	52000271	52000271	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctttcagtgtggtcagatCggggtgcagtgggcagacca	16	9	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52000271	T	T	52000271	1	4	55	0	1	0	0	0	0	0	0	0	14421	899	31	4		4	SIGLEC12	19	52000271	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	808817	52000271	7128712	919	62122											
ZNF613	79898	broad.mit.edu	37	chr19	52448126	52448126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttctccaaaaggtccagGctcactgaacaccagagaac	8	14	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52448126	T	T	52448126	3	4	55	1	0	0	0	0	1	0	0	0	18165	1194	42	3	1004	3	ZNF613	19	52448126	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	447855	52448126	6680857	920	62123											
ZNF808	388558	broad.mit.edu	37	chr19	53050824	53050824	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggcagagtggaaattcctGaaccctgcacagagggcttt	12	9	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53050824	C	C	53050824	2	2	55	1	0	0	0	0	0	0	0	1	18302	1277	45	4		4	ZNF808	19	53050824	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	602698	53050824	6078159	921	62124											
ZNF600	162966	broad.mit.edu	37	chr19	53280665	53280665	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgggctggctgtctcCcatctggaatgccagcaatt	11	13	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53280665	G	G	53280665	1	3	55	0	1	0	0	0	0	0	0	0	18157	638	22	4		4	ZNF600	19	53280665	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	229841	53280665	5848318	922	62125											
TMC4	147798	broad.mit.edu	37	chr19	54675653	54675653	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcacctgtgtgcccgtctGgcctgcatgggccagggcag	14	15	2	0	rs139603991	byFrequency	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54675653	A	A	54675653	2	1	55	1	0	0	0	0	0	0	0	1	16110	1335	47	4		4	TMC4	19	54675653	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1394988	54675653	4453330	923	62126											
LILRB5	10990	broad.mit.edu	37	chr19	54756656	54756656	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttctaagctgactttccTctgtgtttggtttccctctg	7	10	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54756656	C	C	54756656	1	2	55	0	1	0	0	0	0	0	0	0	8866	1566	54	5		5	LILRB5	19	54756656	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	81003	54756656	4372327	924	62127											
LILRB2	10288	broad.mit.edu	37	chr19	54778671	54778671	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcacatcctggggggcttCagatgcagcagcctgcagcg	15	12	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54778671	A	A	54778671	4	1	55	1	0	0	0	0	0	1	0	0	8863	835	29	3	137	3	LILRB2	19	54778671	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	22015	54778671	4350312	925	62128											
KIR3DL1	3811	broad.mit.edu	37	chr19	55341597	55341597	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtgacatacgcacagtTggatcactgcgttttcacac	11	10	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55341597	C	C	55341597	3	2	55	1	0	0	0	0	1	0	0	0	8391	1821	63	5	1236	5	KIR3DL1	19	55341597	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	562926	55341597	3787386	926	62129											
GP6	51206	broad.mit.edu	37	chr19	55527188	55527188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgaacacacacacacatgGggaggcacaattccacagca	8	14	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55527188	T	T	55527188	1	4	55	0	1	0	0	0	0	0	0	0	6649	1247	43	2		2	GP6	19	55527188	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	185591	55527188	3601795	927	62130											
HSPBP1	23640	broad.mit.edu	37	chr19	55776662	55776662	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacctggtactcctcatgcTgctgcagcagctgacagcgg	12	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55776662	A	A	55776662	3	1	55	1	0	0	0	0	1	0	0	0	7496	1580	55	5	98	5	HSPBP1	19	55776662	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	249474	55776662	3352321	928	62131											
NLRP8	126205	broad.mit.edu	37	chr19	56490758	56490758	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtctgtttctgtgtcacAggctggaaaactgcctgttc	11	10	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56490758	C	C	56490758	5	2	55	1	0	0	0	0	0	0	1	0	10578	202	7	5	2909	5	NLRP8	19	56490758	Splice_Site	SNP	A	TCGA-17-Z023-01A-01W-0746-08	714096	56490758	2638225	929	62132											
ZNF667	63934	broad.mit.edu	37	chr19	56953955	56953955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttcttccctgaatgccCtttcttaggttttactagga	8	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56953955	A	A	56953955	3	1	55	1	0	0	0	0	1	0	0	0	18201	681	24	2	1427	2	ZNF667	19	56953955	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	463197	56953955	2175028	930	62133											
USP29	57663	broad.mit.edu	37	chr19	57640187	57640187	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaatctggaaaatttatAagaatttttcagctgagcaa	6	5	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57640187	T	T	57640187	2	4	55	1	0	0	0	0	0	0	0	1	17186	352	13	5		5	USP29	19	57640187	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	686232	57640187	1488796	931	62134											
ZNF773	374928	broad.mit.edu	37	chr19	58016571	58016571	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgttcctgcaagaccctcctCcaaggttctttctgtactat	6	13	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58016571	G	G	58016571	1	3	55	0	1	0	0	0	0	0	0	0	18275	870	30	4		4	ZNF773	19	58016571	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	376384	58016571	1112412	932	62135											
DEFB126	81623	broad.mit.edu	37	chr20	123049	123049	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcaacttctcttctaagTctttatccttcccccaaggc	4	14	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123049	C	C	123049	1	2	55	0	1	0	0	0	0	0	0	0	4451	1682	58	5		5	DEFB126	20	123049	5'Flank	SNP	T	TCGA-17-Z023-01A-01W-0746-08		123049	62902471	933	62136											
PSMF1	9491	broad.mit.edu	37	chr20	1115871	1115872	+	Frame_Shift_Ins	INS	-	C	C													agcagtccccaccgggagttINScccccctgctaccgccagag							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1115872	C	C	1115871	7	5	55	1	0	1	1	0	0	0	0	0	12816	1783	62	0	487	0	PSMF1	20	1115871	Frame_Shift_Ins	INS	-	TCGA-17-Z023-01A-01W-0746-08	992822	1115871	61909649	934	62137											
ProSAPiP1	9762	broad.mit.edu	37	chr20	3145053	3145053	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggggacactggggactcTggccttttgacaggacatgt	16	8	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3145053	A	A	3145053	1	1	55	0	1	0	0	0	0	0	0	0	12978	1595	55	5		5	ProSAPiP1	20	3145053	3'UTR	SNP	T	TCGA-17-Z023-01A-01W-0746-08	2029182	3145053	59880467	935	62138											
PRNP	5621	broad.mit.edu	37	chr20	4680012	4680012	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccctggaggcaaccgctAcccacctcagggcggtggtg	14	15	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4680012	G	G	4680012	3	3	55	1	0	0	0	0	1	0	0	0	12650	391	14	5	148	5	PRNP	20	4680012	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1534959	4680012	58345508	936	62139											
TASP1	55617	broad.mit.edu	37	chr20	13550315	13550315	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atataggtaatatggtaaggCagttgagaaaaagtcttgca	11	3	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13550315	T	T	13550315	1	4	55	0	1	0	0	0	0	0	0	0	15708	725	25	4		4	TASP1	20	13550315	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	8870303	13550315	49475205	937	62140											
FOXA2	3170	broad.mit.edu	37	chr20	22562483	22562483	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccgggcctgaagccgtcgTcttcttaagaggagttcata	12	10	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22562483	C	C	22562483	1	2	55	0	1	0	0	0	0	0	0	0	6048	1682	58	5		5	FOXA2	20	22562483	3'UTR	SNP	T	TCGA-17-Z023-01A-01W-0746-08	9012168	22562483	40463037	938	62141											
NFS1	9054	broad.mit.edu	37	chr20	34278154	34278173	+	Intron	DEL	AAGGAGGACAGTACACACTC	-	-													gaaacaagtcctccagagaaAaggaggacagtacacactca							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34278173	-	-	34278154	6	5	55	0	1	1	0	1	0	0	0	0	10480	29	1	0		0	NFS1	20	34278154	Intron	DEL	AAGGAGGACAGTACACACTC	TCGA-17-Z023-01A-01W-0746-08	11715671	34278154	28747366	939	62142											
RPN2	6185	broad.mit.edu	37	chr20	35867182	35867182	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctctctgtttccaggacAgctgagatgaggataagaca	10	9	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35867182	T	T	35867182	1	4	55	0	1	0	0	0	0	0	0	0	13719	203	7	5		5	RPN2	20	35867182	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1589028	35867182	27158338	940	62143											
PPP1R16B	26051	broad.mit.edu	37	chr20	37531502	37531502	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgggccagcacctggtgggGaccaaccctgtacccttggg	15	13	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37531502	C	C	37531502	1	2	55	0	1	0	0	0	0	0	0	0	12467	1189	41	4		4	PPP1R16B	20	37531502	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1664320	37531502	25494018	941	62144											
TOP1	7150	broad.mit.edu	37	chr20	39743991	39743991	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttcaagagtaataattagGattcacttatatcttttagg	6	4	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39743991	A	A	39743991	1	1	55	0	1	0	0	0	0	0	0	0	16487	1189	41	4		4	TOP1	20	39743991	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2212489	39743991	23281529	942	62145											
IFT52	51098	broad.mit.edu	37	chr20	42223289	42223289	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tattacttttagggtctttgGaatattgtttattgattttc	7	3	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42223289	A	A	42223289	1	1	55	0	1	0	0	0	0	0	0	0	7631	1189	41	4		4	IFT52	20	42223289	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2479298	42223289	20802231	943	62146											
RBPJL	11317	broad.mit.edu	37	chr20	43942958	43942958	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggaatctgctagtgcctgTgtggctattggagtagcaga	16	6	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43942958	C	C	43942958	1	2	55	0	1	0	0	0	0	0	0	0	13270	1711	59	5		5	RBPJL	20	43942958	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1719669	43942958	19082562	944	62147											
SLC13A3	64849	broad.mit.edu	37	chr20	45236117	45236117	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagccttgttttaggtcttaGaagctgatcattaaccaatt	7	7	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45236117	T	T	45236117	1	4	55	0	1	0	0	0	0	0	0	0	14506	957	33	3		3	SLC13A3	20	45236117	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	1293159	45236117	17789403	945	62148											
SULF2	55959	broad.mit.edu	37	chr20	46291890	46291890	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaggaaattgtgagtcTcattgatggtcctcatgcac	11	7	2	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46291890	G	G	46291890	3	3	55	1	0	0	0	0	1	0	0	0	15489	1551	54	5	338	5	SULF2	20	46291890	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	1055773	46291890	16733630	946	62149											
PREX1	57580	broad.mit.edu	37	chr20	47266653	47266653	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggttgatgtggcaattgGtggggcagaagtccaggcca	17	6	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47266653	C	C	47266653	3	2	55	1	0	0	0	0	1	0	0	0	12582	1261	44	4	2138	4	PREX1	20	47266653	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	974763	47266653	15758867	947	62150											
ZBP1	81030	broad.mit.edu	37	chr20	56186875	56186875	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcccagctgcacccgtctcAgtatggactgctccatgtgg	11	14	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56186875	C	C	56186875	3	2	55	1	0	0	0	0	1	0	0	0	17647	188	7	5	519	5	ZBP1	20	56186875	Missense_Mutation	SNP	A	TCGA-17-Z023-01A-01W-0746-08	8920222	56186875	6838645	948	62151											
STX16	8675	broad.mit.edu	37	chr20	57234760	57234760	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacctacttttcctgaagtCtttgctcatatataaaatgc	4	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57234760	G	G	57234760	1	3	55	0	1	0	0	0	0	0	0	0	15457	928	32	4		4	STX16	20	57234760	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1047885	57234760	5790760	949	62152											
TPTE	7179	broad.mit.edu	37	chr21	10970143	10970143	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaattacctttcattactCtagacagaaaccaattaatt	2	8	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10970143	G	G	10970143	1	3	55	0	1	0	0	0	0	0	0	0	16554	928	32	4		4	TPTE	21	10970143	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08		10970143	37159752	950	62153											
BAGE2	85319	broad.mit.edu	37	chr21	11039631	11039631	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggattagaatcagccatacaCcagaaaacctaatgaaaaca	6	9	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11039631	G	G	11039631	1	3	55	0	1	0	0	0	0	0	0	0	1297	522	18	4		4	BAGE2	21	11039631	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	69488	11039631	37090264	951	62154											
DONSON	29980	broad.mit.edu	37	chr21	34951806	34951806	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcatgataggacctgtaatCtccaaactaaattggtctct	8	9	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34951806	G	G	34951806	3	3	55	1	0	0	0	0	1	0	0	0	4746	912	32	4	295	4	DONSON	21	34951806	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	23912175	34951806	13178089	952	62155											
BRWD1	54014	broad.mit.edu	37	chr21	40570870	40570870	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttgctcttcagattcagaGtcttctgagtcactcagaat	7	10	8	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40570870	C	C	40570870	3	2	55	1	0	0	0	0	1	0	0	0	1534	1020	36	4	1741	4	BRWD1	21	40570870	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5619064	40570870	7559025	953	62156											
PDE9A	5152	broad.mit.edu	37	chr21	44108033	44108033	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtgtgttttccaggaacacGaccatctccctgctgaccac	9	14	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44108033	C	C	44108033	2	2	55	1	0	0	0	0	0	0	0	1	11749	1058	37	4		4	PDE9A	21	44108033	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3537163	44108033	4021862	954	62157											
TRPM2	7226	broad.mit.edu	37	chr21	45810823	45810823	+	Frame_Shift_Del	DEL	G	-	-													ccactttggccacgagaactGggaccaccagctgaaactgg							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45810823	-	-	45810823	7	5	55	1	0	1	0	1	0	0	0	0	16711	1357	47	0	1393	0	TRPM2	21	45810823	Frame_Shift_Del	DEL	G	TCGA-17-Z023-01A-01W-0746-08	1702790	45810823	2319072	955	62158											
PI4KA	5297	broad.mit.edu	37	chr22	21087248	21087248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatgagcagctgcactgTtgagggttacctgggggaac	14	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21087248	C	C	21087248	1	2	55	0	1	0	0	0	0	0	0	0	11968	1740	60	5		5	PI4KA	22	21087248	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08		21087248	30217318	956	62159											
CABIN1	23523	broad.mit.edu	37	chr22	24464370	24464370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctctgcctccataggatGgcctcaatgctcagatgtgg	12	11	3	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24464370	T	T	24464370	1	4	55	0	1	0	0	0	0	0	0	0	2554	1363	47	2		2	CABIN1	22	24464370	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3377122	24464370	26840196	957	62160											
RFPL2	10739	broad.mit.edu	37	chr22	32590414	32590414	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggggcacacgagggcctTttattggtgagattcccacc	13	10	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32590414	C	C	32590414	2	2	55	1	0	0	0	0	0	0	0	1	13362	1838	64	5		5	RFPL2	22	32590414	Silent	SNP	T	TCGA-17-Z023-01A-01W-0746-08	8126044	32590414	18714152	958	62161											
TIMP3	7078	broad.mit.edu	37	chr22	33255401	33255402	+	3'UTR	DNP	CC	AA	AA													cacctcacttccctcccttcCcgctgagcttcccttggaca							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	33255402	AA	AA	33255401	1	1	55	0	1	0	0	0	0	0	0	0	16042	638	22	2		2	TIMP3	22	33255401	3'UTR	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	664987	33255401	18049165	959	62162											
CACNG2	10369	broad.mit.edu	37	chr22	36974667	36974667	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttccctggctcatgttccCtggtgggactggtggaggtg	15	10	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36974667	T	T	36974667	1	4	55	0	1	0	0	0	0	0	0	0	2583	696	24	4		4	CACNG2	22	36974667	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3719266	36974667	14329899	960	62163											
POLR2F	5435	broad.mit.edu	37	chr22	38363747	38363747	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtcatcttcctgcccttgCcccatgcccaattttcattc	5	16	3	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38363747	T	T	38363747	1	4	55	0	1	0	0	0	0	0	0	0	12314	754	26	4		4	POLR2F	22	38363747	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1389080	38363747	12940819	961	62164											
CSNK1E	1454	broad.mit.edu	37	chr22	38689321	38689321	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagatggtcaaatggcacaCttgtcttttgagggtgggga	15	6	2	2	rs77945315	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38689321	G	G	38689321	3	3	55	1	0	0	0	0	1	0	0	0	3987	565	20	4	31	4	CSNK1E	22	38689321	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	325574	38689321	12615245	962	62165											
TOB2	10766	broad.mit.edu	37	chr22	41832725	41832725	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggtggctgctggccacCcgccccactgctggctacac	12	17	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41832725	G	G	41832725	3	3	55	1	0	0	0	0	1	0	0	0	16471	623	22	4	413	4	TOB2	22	41832725	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3143404	41832725	9471841	963	62166											
MEI1	150365	broad.mit.edu	37	chr22	42139211	42139211	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccctggtcagtgtactgCagcctgctgcttccgaagat	12	13	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42139211	T	T	42139211	1	4	55	0	1	0	0	0	0	0	0	0	9558	725	25	4		4	MEI1	22	42139211	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	306486	42139211	9165355	964	62167											
CCDC134	79879	broad.mit.edu	37	chr22	42221805	42221805	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgaaaaggcccaaggatctCcagatcccagtctgagttat	9	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42221805	G	G	42221805	3	3	55	1	0	0	0	0	1	0	0	0	2794	855	30	4	690	4	CCDC134	22	42221805	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	82594	42221805	9082761	965	62168											
WBP2NL	164684	broad.mit.edu	37	chr22	42416011	42416011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatttcttcccccaggtgGctgggaaggacaagctactt	11	12	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42416011	T	T	42416011	3	4	55	1	0	0	0	0	1	0	0	0	17387	1203	42	3	331	3	WBP2NL	22	42416011	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	194206	42416011	8888555	966	62169											
ARFGAP3	26286	broad.mit.edu	37	chr22	43206658	43206658	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagccttgtactcctgggctCaagtgatcctttgacctcgg	10	13	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43206658	G	G	43206658	1	3	55	0	1	0	0	0	0	0	0	0	853	841	29	4		4	ARFGAP3	22	43206658	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	790647	43206658	8097908	967	62170											
TTLL1	25809	broad.mit.edu	37	chr22	43447822	43447822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacctcgatcagccagggCttcagcttgtcgtcgatgat	11	11	2	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43447822	A	A	43447822	3	1	55	1	0	0	0	0	1	0	0	0	16848	796	28	3	320	3	TTLL1	22	43447822	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	241164	43447822	7856744	968	62171											
EFCAB6	64800	broad.mit.edu	37	chr22	43933348	43933348	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgccagcagccctggattctCttccggagcctgctctctat	9	16	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43933348	A	A	43933348	3	1	55	1	0	0	0	0	1	0	0	0	4979	912	32	3	564	3	EFCAB6	22	43933348	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	485526	43933348	7371218	969	62172											
ATXN10	25814	broad.mit.edu	37	chr22	46239519	46239519	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgaacagatttgctacatCtgcaattttgtttctttctt	6	7	3	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46239519	T	T	46239519	1	4	55	0	1	0	0	0	0	0	0	0	1214	928	32	4		4	ATXN10	22	46239519	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2306171	46239519	5065047	970	62173											
ASMT	438	broad.mit.edu	37	chrX	1748887	1748887	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggcttctgttctgtatgggGaatgtgttattcatgtcttt	11	5	4	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1748887	C	C	1748887	1	2	55	0	1	0	0	0	0	0	0	0	1049	1189	41	4		4	ASMT	23	1748887	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08		1748887	153521673	971	62174											
KAL1	3730	broad.mit.edu	37	chrX	8503728	8503728	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagtcacttgaaacccagtCatgggctgatagagattggc	11	9	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8503728	T	T	8503728	3	4	55	1	0	0	0	0	1	0	0	0	8044	826	29	4	308	4	KAL1	23	8503728	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	6754841	8503728	146766832	972	62175											
BMX	660	broad.mit.edu	37	chrX	15540369	15540369	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctccctcccttctctccttCctttctctctctttcaagag	2	19	4	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15540369	T	T	15540369	1	4	55	0	1	0	0	0	0	0	0	0	1479	870	30	4		4	BMX	23	15540369	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7036641	15540369	139730191	973	62176											
SYTL5	94122	broad.mit.edu	37	chrX	37913577	37913577	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcctaatctttgaccgGggagacccttgtcaggcttg	13	11	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37913577	T	T	37913577	2	4	55	1	0	0	0	0	0	0	0	1	15605	1219	43	2		2	SYTL5	23	37913577	Silent	SNP	G	TCGA-17-Z023-01A-01W-0746-08	22373208	37913577	117356983	974	62177											
USP9X	8239	broad.mit.edu	37	chrX	41075524	41075524	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcgctggtataaatttgatGatggtgatgtaacagaatgt	11	3	0	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41075524	A	A	41075524	3	1	55	1	0	0	0	0	1	0	0	0	17217	1290	45	4	5838	4	USP9X	23	41075524	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	3161947	41075524	114195036	975	62178											
GATA1	2623	broad.mit.edu	37	chrX	48652706	48652706	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttgtaaaataaaaccacCaaagtcctgaaattgtgggt	7	7	0	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48652706	A	A	48652706	1	1	55	0	1	0	0	0	0	0	0	0	6315	609	21	2		2	GATA1	23	48652706	3'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	7577182	48652706	106617854	976	62179											
KDM5C	8242	broad.mit.edu	37	chrX	53244883	53244883	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccatggaggcccgctttTgtggttaatgcgaactggtc	14	10	0	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53244883	C	C	53244883	1	2	55	0	1	0	0	0	0	0	0	0	8205	1827	63	5		5	KDM5C	23	53244883	Intron	SNP	T	TCGA-17-Z023-01A-01W-0746-08	4592177	53244883	102025677	977	62180											
FAM123B	139285	broad.mit.edu	37	chrX	63412181	63412182	+	Missense_Mutation	DNP	CC	AA	AA													cctgttctgctattatgtcaCcacaacctgtcaatgaatca							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	63412182	AA	AA	63412181	3	1	55	1	0	0	0	0	1	0	0	0	5469	507	18	3	2425	3	FAM123B	23	63412181	Missense_Mutation	DNP	CC	TCGA-17-Z023-01A-01W-0746-08	10167298	63412181	91858379	978	62181											
CYLC1	1538	broad.mit.edu	37	chrX	83126627	83126627	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaaatctaagttggtaaaGcatatataaatataagtaag	7	3	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83126627	A	A	83126627	1	1	55	0	1	0	0	0	0	0	0	0	4174	986	34	4		4	CYLC1	23	83126627	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	19714446	83126627	72143933	979	62182											
XKRX	402415	broad.mit.edu	37	chrX	100169469	100169469	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgcaatggatgcaagtacTggaagaaaaggagcatgaag	14	5	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100169469	C	C	100169469	3	2	55	1	0	0	0	0	1	0	0	0	17566	1580	55	5	145	5	XKRX	23	100169469	Missense_Mutation	SNP	T	TCGA-17-Z023-01A-01W-0746-08	17042842	100169469	55101091	980	62183											
NXF5	55998	broad.mit.edu	37	chrX	101091845	101091845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctcacacagtgatcccCagtcagaatcttgcttgaca	7	13	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101091845	A	A	101091845	1	1	55	0	1	0	0	0	0	0	0	0	10881	609	21	2		2	NXF5	23	101091845	Intron	SNP	C	TCGA-17-Z023-01A-01W-0746-08	922376	101091845	54178715	981	62184											
ARMCX5	64860	broad.mit.edu	37	chrX	101858564	101858564	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaatattattgaaatatttGagaatataaattttcagttc	4	2	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101858564	T	T	101858564	4	4	55	1	0	0	0	0	0	1	0	0	966	1291	45	3	1497	3	ARMCX5	23	101858564	Nonsense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	766719	101858564	53411996	982	62185											
BEX2	84707	broad.mit.edu	37	chrX	102564634	102564634	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccatcagctgtctcacctCctccccaatcctttccatat	2	18	2	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102564634	A	A	102564634	4	1	55	1	0	0	0	0	0	1	0	0	1417	864	30	3	119	3	BEX2	23	102564634	Nonsense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	706070	102564634	52705926	983	62186											
NRK	203447	broad.mit.edu	37	chrX	105168748	105168748	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgatggaagtcgtggaaaaGaggaagcctacagaggctat	14	5	0	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105168748	C	C	105168748	3	2	55	1	0	0	0	0	1	0	0	0	10750	943	33	4	3111	4	NRK	23	105168748	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	2604114	105168748	50101812	984	62187											
IRS4	8471	broad.mit.edu	37	chrX	107979602	107979602	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgatggttttaaggtgagCgaggaggagggggaattcag	18	4	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107979602	A	A	107979602	1	1	55	0	1	0	0	0	0	0	0	0	7912	783	27	3		3	IRS4	23	107979602	5'UTR	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2810854	107979602	47290958	985	62188											
CHRDL1	91851	broad.mit.edu	37	chrX	109932109	109932109	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcagaacccaagccctgaActacttaacatatcaagcat	4	12	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109932109	G	G	109932109	1	3	55	0	1	0	0	0	0	0	0	0	3404	58	2	5		5	CHRDL1	23	109932109	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1952507	109932109	45338451	986	62189											
CHRDL1	91851	broad.mit.edu	37	chrX	109937401	109937401	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccccttaccttgtccatgCttgtgtttgttattgatgac	8	10	0	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109937401	T	T	109937401	2	4	55	1	0	0	0	0	0	0	0	1	3404	796	28	4		4	CHRDL1	23	109937401	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	5292	109937401	45333159	987	62190											
TRPC5	7224	broad.mit.edu	37	chrX	111155676	111155676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctttggcaaagagcttgCactgctgagagagctcctca	12	10	2	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111155676	A	A	111155676	3	1	55	1	0	0	0	0	1	0	0	0	16707	710	25	3	2214	3	TRPC5	23	111155676	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	1218275	111155676	44114884	988	62191											
WDR44	54521	broad.mit.edu	37	chrX	117540866	117540866	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgatcaagatgatccttcAtcaagtgatgatgaaggaat	9	6	3	6			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117540866	C	C	117540866	2	2	55	1	0	0	0	0	0	0	0	1	17423	204	8	5		5	WDR44	23	117540866	Silent	SNP	A	TCGA-17-Z023-01A-01W-0746-08	6385190	117540866	37729694	989	62192											
DOCK11	139818	broad.mit.edu	37	chrX	117817213	117817213	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgactaaaactgaaaacatGatctgcgggtcccaaaattg	9	8	1	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117817213	A	A	117817213	1	1	55	0	1	0	0	0	0	0	0	0	4726	1305	45	4		4	DOCK11	23	117817213	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	276347	117817213	37453347	990	62193											
ODZ1	10178	broad.mit.edu	37	chrX	123556172	123556172	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtcacagtcagtggggGcaccagcgatgatgtagatc	14	9	2	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123556172	A	A	123556172	3	1	55	1	0	0	0	0	1	0	0	0	10929	1203	42	4	3813	4	ODZ1	23	123556172	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	5738959	123556172	31714388	991	62194											
ACTRT1	139741	broad.mit.edu	37	chrX	127186048	127186048	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattaagtcttgctaaaggCacattgaatttacaatgtcc	7	7	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127186048	A	A	127186048	2	1	55	1	0	0	0	0	0	0	0	1	218	697	25	3		3	ACTRT1	23	127186048	Silent	SNP	C	TCGA-17-Z023-01A-01W-0746-08	3629876	127186048	28084512	992	62195											
IGSF1	3547	broad.mit.edu	37	chrX	130413381	130413381	+	Intron	DEL	C	-	-													ggagggtggaggaaagggggCggcaatttatgtcattggct							TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130413381	-	-	130413381	6	5	55	0	1	1	0	1	0	0	0	0	7666	783	27	0		0	IGSF1	23	130413381	Intron	DEL	C	TCGA-17-Z023-01A-01W-0746-08	3227333	130413381	24857179	993	62196											
MAGEC3	139081	broad.mit.edu	37	chrX	140984190	140984190	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcctgccagctgtgccccGaggtgctttctcacatcctc	9	17	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140984190	T	T	140984190	1	4	55	0	1	0	0	0	0	0	0	0	9274	1073	37	3		3	MAGEC3	23	140984190	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	10570809	140984190	14286370	994	62197											
MAGEC1	9947	broad.mit.edu	37	chrX	140993845	140993845	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattttccagagttcccctGagagaactcagagtactttt	8	9	1	4			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140993845	A	A	140993845	3	1	55	1	0	0	0	0	1	0	0	0	9272	1291	45	4	661	4	MAGEC1	23	140993845	Missense_Mutation	SNP	G	TCGA-17-Z023-01A-01W-0746-08	9655	140993845	14276715	995	62198											
MAGEC1	9947	broad.mit.edu	37	chrX	140996477	140996477	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgctaaagaataccgtccCtattacctttccatcctctt	3	14	1	1			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140996477	T	T	140996477	3	4	55	1	0	0	0	0	1	0	0	0	9272	681	24	4	3293	4	MAGEC1	23	140996477	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	2632	140996477	14274083	996	62199											
MAGEC2	51438	broad.mit.edu	37	chrX	141291284	141291284	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcatcagcatctctgcctCtgttacaggctcctctgctt	6	14	5	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291284	T	T	141291284	3	4	55	1	0	0	0	0	1	0	0	0	9273	922	32	4	635	4	MAGEC2	23	141291284	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	294807	141291284	13979276	997	62200											
AFF2	2334	broad.mit.edu	37	chrX	148068832	148068832	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcccagcgtgatggggaagGcctagaaccccactgtcact	11	13	1	2			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148068832	C	C	148068832	1	2	55	0	1	0	0	0	0	0	0	0	357	1218	42	4		4	AFF2	23	148068832	Intron	SNP	G	TCGA-17-Z023-01A-01W-0746-08	6777548	148068832	7201728	998	62201											
MTMR1	8776	broad.mit.edu	37	chrX	149896373	149896373	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaataatttgtactgctagtAactcaaatgttttcgggata	8	5	1	0			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149896373	C	C	149896373	1	2	55	0	1	0	0	0	0	0	0	0	10032	377	13	5		5	MTMR1	23	149896373	Intron	SNP	A	TCGA-17-Z023-01A-01W-0746-08	1827541	149896373	5374187	999	62202											
BRCC3	79184	broad.mit.edu	37	chrX	154348415	154348415	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttatgcaagaactttcttCtctagaataaatcaggagac	7	8	3	3			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154348415	G	G	154348415	3	3	55	1	0	0	0	0	1	0	0	0	1509	913	32	4	983	4	BRCC3	23	154348415	Missense_Mutation	SNP	C	TCGA-17-Z023-01A-01W-0746-08	4452042	154348415	922145	1000	62203											
CA6	765	broad.mit.edu	37	chr1	9023451	9023451	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactcccatgcaaacaccctCtagccctcacccctccaccc	2	24	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9023451	A	A	9023451	1	1	56	0	1	0	0	0	0	0	0	0	2547	928	32	3		3	CA6	1	9023451	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08		9023451	240227170	1	62204											
KAZ	23254	broad.mit.edu	37	chr1	15183792	15183792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactttgggaggctgaggtGggaggatcacttgagctcag	17	7	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15183792	T	T	15183792	1	4	56	0	1	0	0	0	0	0	0	0	8058	1363	47	2		2	KAZ	1	15183792	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6160341	15183792	234066829	2	62205											
IGSF21	84966	broad.mit.edu	37	chr1	18560335	18560335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacccagtggcttaacaCagttaagccatttcaatgga	9	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18560335	A	A	18560335	1	1	56	0	1	0	0	0	0	0	0	0	7669	493	17	3		3	IGSF21	1	18560335	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3376543	18560335	230690286	3	62206											
KIAA0090	23065	broad.mit.edu	37	chr1	19563901	19563901	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtaagtgatacatattctTaggagccaacataatgatgc	8	7	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19563901	C	C	19563901	1	2	56	0	1	0	0	0	0	0	0	0	8223	1769	61	5		5	KIAA0090	1	19563901	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1003566	19563901	229686720	4	62207											
PLA2G5	5322	broad.mit.edu	37	chr1	20361463	20361463	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgagaatgagggaagGgggctgggaacagggagtcc	20	4	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20361463	A	A	20361463	1	1	56	0	1	0	0	0	0	0	0	0	12102	1247	43	4		4	PLA2G5	1	20361463	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	797562	20361463	228889158	5	62208											
ECE1	1889	broad.mit.edu	37	chr1	21586902	21586907	+	Intron	DEL	TGGAGT	-	-													ttttctggaacaacagacagTggagtttgcaatgcggcccc							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21586907	-	-	21586902	6	5	56	0	1	1	0	1	0	0	0	0	4929	1711	59	0		0	ECE1	1	21586902	Intron	DEL	TGGAGT	TCGA-17-Z025-01A-01W-0746-08	1225439	21586902	227663719	6	62209											
ALPL	249	broad.mit.edu	37	chr1	21902974	21902974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggggactgtactcctGgggccccagcatgacccctg	15	14	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21902974	T	T	21902974	1	4	56	0	1	0	0	0	0	0	0	0	547	1363	47	2		2	ALPL	1	21902974	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	316072	21902974	227347647	7	62210											
HSPG2	3339	broad.mit.edu	37	chr1	22157749	22157749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggcagtgggagatgcCgtgcgccgtgaggttgaggt	22	6	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22157749	A	A	22157749	3	1	56	1	0	0	0	0	1	0	0	0	7500	652	23	1	1710	1	HSPG2	1	22157749	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	254775	22157749	227092872	8	62211											
WDTC1	23038	broad.mit.edu	37	chr1	27624556	27624556	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagggcccctcacaatGccatgctttatggaaaccga	10	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27624556	C	C	27624556	3	2	56	1	0	0	0	0	1	0	0	0	17469	1319	46	4	1225	4	WDTC1	1	27624556	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5466807	27624556	221626065	9	62212											
SESN2	83667	broad.mit.edu	37	chr1	28595662	28595662	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctctttattctcccttctActacggactaacctcatatg	3	14	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28595662	T	T	28595662	1	4	56	0	1	0	0	0	0	0	0	0	14238	406	14	5		5	SESN2	1	28595662	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	971106	28595662	220654959	10	62213											
COL16A1	1307	broad.mit.edu	37	chr1	32158316	32158316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcgcacagtccctcccCaggggctggccccatattgg	11	17	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32158316	A	A	32158316	1	1	56	0	1	0	0	0	0	0	0	0	3705	609	21	2		2	COL16A1	1	32158316	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3562654	32158316	217092305	11	62214											
CSMD2	114784	broad.mit.edu	37	chr1	34088983	34088983	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttacctgagaaactcccCagcatggttacagtgttatc	8	11	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34088983	T	T	34088983	2	4	56	1	0	0	0	0	0	0	0	1	3979	581	21	4		4	CSMD2	1	34088983	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1930667	34088983	215161638	12	62215											
GJB4	127534	broad.mit.edu	37	chr1	35226896	35226896	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcctgctgagtggcgtgaAcaagtactccacagtgctga	14	10	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35226896	G	G	35226896	3	3	56	1	0	0	0	0	1	0	0	0	6474	43	2	5	43	5	GJB4	1	35226896	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1137913	35226896	214023725	13	62216											
ST3GAL3	6487	broad.mit.edu	37	chr1	44383532	44383532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattttttggtagaaacgGggtttcaccatgttggccag	12	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44383532	T	T	44383532	1	4	56	0	1	0	0	0	0	0	0	0	15334	1247	43	2		2	ST3GAL3	1	44383532	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9156636	44383532	204867089	14	62217											
KLF17	128209	broad.mit.edu	37	chr1	44588213	44588213	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccatcaccctttgggtccGatagcacactgaatccaaca	7	14	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44588213	A	A	44588213	1	1	56	0	1	0	0	0	0	0	0	0	8416	1073	37	4		4	KLF17	1	44588213	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	204681	44588213	204662408	15	62218											
BSND	7809	broad.mit.edu	37	chr1	55474144	55474144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcccaacaactggcagcGgtacccaaggacaaaggtgg	12	13	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55474144	T	T	55474144	3	4	56	1	0	0	0	0	1	0	0	0	1540	1116	39	1	820	1	BSND	1	55474144	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10885931	55474144	193776477	16	62219											
DAB1	1600	broad.mit.edu	37	chr1	57756984	57756984	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtttcatgaaggcattgaTagggtttatacagcaaaggg	13	4	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57756984	C	C	57756984	1	2	56	0	1	0	0	0	0	0	0	0	4250	1421	49	5		5	DAB1	1	57756984	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2282840	57756984	191493637	17	62220											
C1orf87	127795	broad.mit.edu	37	chr1	60520941	60520941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttgttttctgatttctGgttgttctctgggtgctttt	11	6	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60520941	T	T	60520941	3	4	56	1	0	0	0	0	1	0	0	0	2086	1357	47	2	1403	2	C1orf87	1	60520941	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2763957	60520941	188729680	18	62221											
LRRC7	57554	broad.mit.edu	37	chr1	70394370	70394370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtattagggtgggagtgacCcgattttccaggtgccgtct	14	8	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70394370	A	A	70394370	1	1	56	0	1	0	0	0	0	0	0	0	9107	638	22	2		2	LRRC7	1	70394370	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	9873429	70394370	178856251	19	62222											
TNNI3K	51086	broad.mit.edu	37	chr1	74880398	74880398	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtaccaaagacatctaacCattcaggaaattctgtcaac	6	10	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74880398	T	T	74880398	1	4	56	0	1	0	0	0	0	0	0	0	16452	609	21	4		4	TNNI3K	1	74880398	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4486028	74880398	174370223	20	62223											
C1orf173	127254	broad.mit.edu	37	chr1	75038498	75038498	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcagaaccgtcctctcTctttgatgctgtgtcctcca	6	15	4	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75038498	A	A	75038498	4	1	56	1	0	0	0	0	0	1	0	0	2034	1559	54	5	1700	5	C1orf173	1	75038498	Nonsense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	158100	75038498	174212123	21	62224											
SLC44A5	204962	broad.mit.edu	37	chr1	75680244	75680244	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaggatgtaatgctcaAggttcactacattgttaaat	8	5	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75680244	C	C	75680244	1	2	56	0	1	0	0	0	0	0	0	0	14753	87	3	5		5	SLC44A5	1	75680244	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	641746	75680244	173570377	22	62225											
SLC44A5	204962	broad.mit.edu	37	chr1	75792495	75792495	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggagaagatggcttgtatGgttgcaactttagctccaaa	11	6	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75792495	A	A	75792495	1	1	56	0	1	0	0	0	0	0	0	0	14753	1363	47	4		4	SLC44A5	1	75792495	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	112251	75792495	173458126	23	62226											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76940071	76940071	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggtggcaaggttcagcggGacctcatgattggatctggg	16	7	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76940071	T	T	76940071	1	4	56	0	1	0	0	0	0	0	0	0	15343	1189	41	3		3	ST6GALNAC3	1	76940071	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1147576	76940071	172310550	24	62227											
TTLL7	79739	broad.mit.edu	37	chr1	84373139	84373139	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaaaacagatgacctacCacttgagagttggtagagca	11	8	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84373139	A	A	84373139	2	1	56	1	0	0	0	0	0	0	0	1	16858	608	21	2		2	TTLL7	1	84373139	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7433068	84373139	164877482	25	62228											
DNASE2B	58511	broad.mit.edu	37	chr1	84864322	84864322	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcctctttggggtgctGggggcagcaacaatttcatg	14	9	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84864322	T	T	84864322	2	4	56	1	0	0	0	0	0	0	0	1	4705	1335	47	2		2	DNASE2B	1	84864322	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	491183	84864322	164386299	26	62229											
LPPR4	9890	broad.mit.edu	37	chr1	99771331	99771331	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgacagacctcaatcaaGatcccaaccgacttttatct	4	14	4	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771331	T	T	99771331	3	4	56	1	0	0	0	0	1	0	0	0	9014	942	33	3	1083	3	LPPR4	1	99771331	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	14907009	99771331	149479290	27	62230											
AGL	178	broad.mit.edu	37	chr1	100381088	100381088	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttatcatatttaatccaAatacattgacatcaaccata	2	8	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100381088	G	G	100381088	1	3	56	0	1	0	0	0	0	0	0	0	384	29	1	5		5	AGL	1	100381088	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	609757	100381088	148869533	28	62231											
SYPL2	284612	broad.mit.edu	37	chr1	110022016	110022016	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagctctttggctttatcaActtcttcctgtgggccggga	11	11	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110022016	G	G	110022016	3	3	56	1	0	0	0	0	1	0	0	0	15582	43	2	5	687	5	SYPL2	1	110022016	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	9640928	110022016	139228605	29	62232											
C1orf162	128346	broad.mit.edu	37	chr1	112020713	112020713	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctgcagactttgaccccAttgtctatgctcaaattaaa	5	10	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112020713	T	T	112020713	3	4	56	1	0	0	0	0	1	0	0	0	2030	217	8	5	454	5	C1orf162	1	112020713	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1998697	112020713	137229908	30	62233											
SYT6	148281	broad.mit.edu	37	chr1	114669265	114669265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctgtgttggagaaatcGctttttgttgatgcatgagc	11	6	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114669265	T	T	114669265	1	4	56	0	1	0	0	0	0	0	0	0	15597	1102	38	3		3	SYT6	1	114669265	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2648552	114669265	134581356	31	62234											
CASQ2	845	broad.mit.edu	37	chr1	116260499	116260500	+	Missense_Mutation	DNP	CC	AT	AT													caaaggccacaatgtggatcCcattcaaatcatcttcctgt							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	116260500	AT	AT	116260499	3	1	56	1	0	0	0	0	1	0	0	0	2707	623	22	2	415	2	CASQ2	1	116260499	Missense_Mutation	DNP	CC	TCGA-17-Z025-01A-01W-0746-08	1591234	116260499	132990122	32	62235											
MAN1A2	10905	broad.mit.edu	37	chr1	118065406	118065406	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcacttcatgttcttgttGaattctaactgaagctcatt	6	9	5	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118065406	T	T	118065406	1	4	56	0	1	0	0	0	0	0	0	0	9303	1305	45	3		3	MAN1A2	1	118065406	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1804907	118065406	131185215	33	62236											
NBPF10	100132406	broad.mit.edu	37	chr1	145359323	145359323	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataggcatatgtaggttgaAtgaaactctagttccacttg	9	6	1	2	rs141280505	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145359323	G	G	145359323	1	3	56	0	1	0	0	0	0	0	0	0	10287	116	4	5		5	NBPF10	1	145359323	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	27293917	145359323	103891298	34	62237											
NBPF15	284565	broad.mit.edu	37	chr1	148560548	148560548	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctcactaacctctaattcAaggctcaaggaatcctcctg	6	13	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148560548	G	G	148560548	1	3	56	0	1	0	0	0	0	0	0	0	10290	145	5	5		5	NBPF15	1	148560548	5'Flank	SNP	A	TCGA-17-Z025-01A-01W-0746-08	3201225	148560548	100690073	35	62238											
FAM63A	55793	broad.mit.edu	37	chr1	150970641	150970644	+	Frame_Shift_Del	DEL	AGTC	-	-													cagggaatgactcaggtgaaAgtcagagtcacaaaagcagc							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150970644	-	-	150970641	7	5	56	1	0	1	0	1	0	0	0	0	5647	72	3	0	331	0	FAM63A	1	150970641	Frame_Shift_Del	DEL	AGTC	TCGA-17-Z025-01A-01W-0746-08	2410093	150970641	98279980	36	62239											
TDRKH	11022	broad.mit.edu	37	chr1	151748214	151748214	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagaattcaaaaagcctgGgaatgtgagaattccttcca	8	10	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151748214	A	A	151748214	1	1	56	0	1	0	0	0	0	0	0	0	15859	1247	43	4		4	TDRKH	1	151748214	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	777573	151748214	97502407	37	62240											
TCHH	7062	broad.mit.edu	37	chr1	152083862	152083862	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgcgcctctcctcctgctCgagtctctccacctcctcgc	6	22	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152083862	A	A	152083862	4	1	56	1	0	0	0	0	0	1	0	0	15822	893	31	3	4004	3	TCHH	1	152083862	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	335648	152083862	97166759	38	62241											
FLG	2312	broad.mit.edu	37	chr1	152282882	152282882	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctcctctgcttgaccCcgggtgtccacgaatggtgt	10	15	1	1	rs147239265	byFrequency	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152282882	T	T	152282882	3	4	56	1	0	0	0	0	1	0	0	0	5979	623	22	4	7709	4	FLG	1	152282882	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	199020	152282882	96967739	39	62242											
LCE1C	353133	broad.mit.edu	37	chr1	152777524	152777524	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgagcctctcaggcagGcctagtaggagaagggggat	16	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152777524	C	C	152777524	1	2	56	0	1	0	0	0	0	0	0	0	8733	1218	42	4		4	LCE1C	1	152777524	3'UTR	SNP	G	TCGA-17-Z025-01A-01W-0746-08	494642	152777524	96473097	40	62243											
SPRR3	6707	broad.mit.edu	37	chr1	152976035	152976036	+	3'UTR	DNP	CC	AA	AA													acagacaagcccttgagaagCcaaccaccagatgctggaca							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152976036	AA	AA	152976035	1	1	56	0	1	0	0	0	0	0	0	0	15221	754	26	3		3	SPRR3	1	152976035	3'UTR	DNP	CC	TCGA-17-Z025-01A-01W-0746-08	198511	152976035	96274586	41	62244											
PGLYRP3	114771	broad.mit.edu	37	chr1	153276264	153276264	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctaacaggaaaaagcactCccaaacatgactccaaacat	5	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153276264	A	A	153276264	1	1	56	0	1	0	0	0	0	0	0	0	11890	870	30	3		3	PGLYRP3	1	153276264	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	300229	153276264	95974357	42	62245											
S100A7L2	645922	broad.mit.edu	37	chr1	153409477	153409477	+	3'UTR	DEL	G	-	-													aaaaggaggaagtatcttgtGggagtagatgctttattgtc							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153409477	-	-	153409477	6	5	56	0	1	1	0	1	0	0	0	0	13896	1363	47	0		0	S100A7L2	1	153409477	3'UTR	DEL	G	TCGA-17-Z025-01A-01W-0746-08	133213	153409477	95841144	43	62246											
SEMA4A	64218	broad.mit.edu	37	chr1	156144918	156144918	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaggtgtctggagggtGccccgagccaactgtagtgt	16	9	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156144918	T	T	156144918	2	4	56	1	0	0	0	0	0	0	0	1	14144	1306	46	3		3	SEMA4A	1	156144918	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2735441	156144918	93105703	44	62247											
NTRK1	4914	broad.mit.edu	37	chr1	156834337	156834337	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgagaggctgagcactgaGggactgggagaagtcaggaa	17	7	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156834337	A	A	156834337	1	1	56	0	1	0	0	0	0	0	0	0	10801	1015	35	4		4	NTRK1	1	156834337	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	689419	156834337	92416284	45	62248											
OR10K2	391107	broad.mit.edu	37	chr1	158390436	158390436	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttgggtacaatgatgaagGtgtagcaaatctcagagcaa	11	6	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158390436	C	C	158390436	3	2	56	1	0	0	0	0	1	0	0	0	11008	1261	44	4	719	4	OR10K2	1	158390436	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1556099	158390436	90860185	46	62249											
SPTA1	6708	broad.mit.edu	37	chr1	158641242	158641242	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctcgttttccaggaagGcctgtagaagacagaaagac	11	9	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158641242	T	T	158641242	3	4	56	1	0	0	0	0	1	0	0	0	15234	1217	42	3	5933	3	SPTA1	1	158641242	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	250806	158641242	90609379	47	62250											
PYHIN1	149628	broad.mit.edu	37	chr1	158924983	158924983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacattagacagatcaaTgagacagaaagtcaacaagg	9	7	3	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158924983	C	C	158924983	1	2	56	0	1	0	0	0	0	0	0	0	12973	1479	51	5		5	PYHIN1	1	158924983	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	283741	158924983	90325638	48	62251											
AIM2	9447	broad.mit.edu	37	chr1	159035705	159035705	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatatgaaaacttaccttctGgactacaaacaaaccattca	4	10	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159035705	A	A	159035705	4	1	56	1	0	0	0	0	0	1	0	0	432	1357	47	4	232	4	AIM2	1	159035705	Nonsense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	110722	159035705	90214916	49	62252											
ARHGAP30	257106	broad.mit.edu	37	chr1	161018084	161018085	+	Missense_Mutation	DNP	AC	GA	GA													ccaagagaacaggggcatagAcagccgtctggactgggctg							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	161018085	GA	GA	161018084	3	3	56	1	0	0	0	0	1	0	0	0	881	273	10	5	582	5	ARHGAP30	1	161018084	Missense_Mutation	DNP	AC	TCGA-17-Z025-01A-01W-0746-08	1982379	161018084	88232537	50	62253											
NDUFS2	4720	broad.mit.edu	37	chr1	161172232	161172232	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcggcccaggtgctgcgGcctggggctggagtccgatt	18	12	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161172232	T	T	161172232	2	4	56	1	0	0	0	0	0	0	0	1	10387	1190	42	3		3	NDUFS2	1	161172232	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	154148	161172232	88078389	51	62254											
FCGR2C	9103	broad.mit.edu	37	chr1	161563248	161563248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgagtgcagggaaatgGgagagaccctccctgagaaa	13	10	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161563248	T	T	161563248	1	4	56	0	1	0	0	0	0	0	0	0	5840	1247	43	2		2	FCGR2C	1	161563248	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	391016	161563248	87687373	52	62255											
FCRLA	84824	broad.mit.edu	37	chr1	161680714	161680714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctatggtgaggtcctgGgaaggcctgagcagtgcccc	15	11	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161680714	T	T	161680714	1	4	56	0	1	0	0	0	0	0	0	0	5857	1247	43	2		2	FCRLA	1	161680714	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	117466	161680714	87569907	53	62256											
NOS1AP	9722	broad.mit.edu	37	chr1	162175442	162175442	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggtgtcatcactattggaTctttttactaaggaagtctt	8	8	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162175442	C	C	162175442	1	2	56	0	1	0	0	0	0	0	0	0	10637	1450	50	5		5	NOS1AP	1	162175442	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	494728	162175442	87075179	54	62257											
DUSP27	92235	broad.mit.edu	37	chr1	167097620	167097620	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttctctgaatttggagcCaagaggaagttcacccagag	11	9	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167097620	T	T	167097620	2	4	56	1	0	0	0	0	0	0	0	1	4864	581	21	4		4	DUSP27	1	167097620	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4922178	167097620	82153001	55	62258											
KIFAP3	22920	broad.mit.edu	37	chr1	170003569	170003569	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcatgtctttttaactcaTgatcaataatattcatacac	3	9	5	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170003569	C	C	170003569	3	2	56	1	0	0	0	0	1	0	0	0	8381	1464	51	5	1748	5	KIFAP3	1	170003569	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2905949	170003569	79247052	56	62259											
TNR	7143	broad.mit.edu	37	chr1	175457717	175457717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctttggtggtaagttgGgcagatttgctatgggtcca	14	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175457717	T	T	175457717	1	4	56	0	1	0	0	0	0	0	0	0	16461	1247	43	2		2	TNR	1	175457717	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5454148	175457717	73792904	57	62260											
TNR	7143	broad.mit.edu	37	chr1	175661691	175661691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttgcagctataaacaaGtaagctcattttcccacgta	5	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175661691	T	T	175661691	1	4	56	0	1	0	0	0	0	0	0	0	16461	1044	36	3		3	TNR	1	175661691	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	203974	175661691	73588930	58	62261											
CEP350	9857	broad.mit.edu	37	chr1	180013210	180013210	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccatctgtttcactctcTcagagtaaagaagggaccct	8	11	4	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180013210	G	G	180013210	2	3	56	1	0	0	0	0	0	0	0	1	3284	1538	54	5		5	CEP350	1	180013210	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	4351519	180013210	69237411	59	62262											
CACNA1E	777	broad.mit.edu	37	chr1	181535977	181535977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtggttctcaactagggGtgatttttgcttcccagagg	13	8	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181535977	T	T	181535977	1	4	56	0	1	0	0	0	0	0	0	0	2568	1276	44	3		3	CACNA1E	1	181535977	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1522767	181535977	67714644	60	62263											
CACNA1E	777	broad.mit.edu	37	chr1	181702596	181702596	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacagtctgatggtgtccaGaggctccgggctggcaggag	16	10	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181702596	T	T	181702596	3	4	56	1	0	0	0	0	1	0	0	0	2568	942	33	3	3054	3	CACNA1E	1	181702596	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	166619	181702596	67548025	61	62264											
CACNA1E	777	broad.mit.edu	37	chr1	181759712	181759712	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgaatgcatgagttatatGacctcaaaactacttccttg	8	8	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181759712	T	T	181759712	1	4	56	0	1	0	0	0	0	0	0	0	2568	1305	45	3		3	CACNA1E	1	181759712	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	57116	181759712	67490909	62	62265											
LAMC1	3915	broad.mit.edu	37	chr1	183045997	183045998	+	Intron	INS	-	A	A													atgcagaagaaaaatctcttINSagagaccccactgtgtctcc					rs146909692	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183045998	A	A	183045997	6	5	56	0	1	1	1	0	0	0	0	0	8686	1769	61	0		0	LAMC1	1	183045997	Intron	INS	-	TCGA-17-Z025-01A-01W-0746-08	1286285	183045997	66204624	63	62266											
LAMC1	3915	broad.mit.edu	37	chr1	183106849	183106849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaagaacttttgcagaaGttacagatctggataatgag	10	5	1	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183106849	T	T	183106849	3	4	56	1	0	0	0	0	1	0	0	0	8686	1029	36	3	4462	3	LAMC1	1	183106849	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	60852	183106849	66143772	64	62267											
TPR	7175	broad.mit.edu	37	chr1	186326650	186326650	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaagatactagatgctGtgatattacctcagatgaac	8	7	2	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186326650	A	A	186326650	4	1	56	1	0	0	0	0	0	1	0	0	16540	1386	48	4	5640	4	TPR	1	186326650	Nonsense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3219801	186326650	62923971	65	62268											
FAM5C	339479	broad.mit.edu	37	chr1	190110889	190110889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggagagacaggatttcacCatgttggtcaggctggtctc	13	8	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190110889	A	A	190110889	1	1	56	0	1	0	0	0	0	0	0	0	5645	609	21	2		2	FAM5C	1	190110889	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3784239	190110889	59139732	66	62269											
FAM5C	339479	broad.mit.edu	37	chr1	190250613	190250613	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactgtagctatcttgatTaattaacacttttctgcgat	5	8	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190250613	C	C	190250613	1	2	56	0	1	0	0	0	0	0	0	0	5645	1769	61	5		5	FAM5C	1	190250613	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	139724	190250613	59000008	67	62270											
CRB1	23418	broad.mit.edu	37	chr1	197411417	197411417	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctggcgagcgctgcgagGtggacgtaagcagcctctcc	15	12	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197411417	C	C	197411417	3	2	56	1	0	0	0	0	1	0	0	0	3880	1261	44	4	4042	4	CRB1	1	197411417	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	7160804	197411417	51839204	68	62271											
LAX1	54900	broad.mit.edu	37	chr1	203740567	203740567	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccagacaaagagccaaaaAtatttatgacatcttgcctt	5	9	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203740567	T	T	203740567	3	4	56	1	0	0	0	0	1	0	0	0	8720	101	4	5	327	5	LAX1	1	203740567	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	6329150	203740567	45510054	69	62272											
KISS1	3814	broad.mit.edu	37	chr1	204164502	204164502	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatatacacacatacaccTatacacacacatcatgcaca	1	15	1	0	rs115170052		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204164502	C	C	204164502	1	2	56	0	1	0	0	0	0	0	0	0	8398	1537	53	5		5	KISS1	1	204164502	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	423935	204164502	45086119	70	62273											
NFASC	23114	broad.mit.edu	37	chr1	204923422	204923422	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacttccgcagtggcgggCggccggaggaatatgagggg	19	8	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204923422	T	T	204923422	3	4	56	1	0	0	0	0	1	0	0	0	10454	759	27	4	336	4	NFASC	1	204923422	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	758920	204923422	44327199	71	62274											
NFASC	23114	broad.mit.edu	37	chr1	204970212	204970212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggcatgtgcgtgcatgCacacgcttgtgtgtatgtgt	15	7	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204970212	A	A	204970212	1	1	56	0	1	0	0	0	0	0	0	0	10454	725	25	3		3	NFASC	1	204970212	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	46790	204970212	44280409	72	62275											
PLXNA2	5362	broad.mit.edu	37	chr1	208257636	208257645	+	Intron	DEL	CCGGAAGCCA	-	-													gcctgtgaacctggaaggctCcggaagccagggctggccat							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	208257645	-	-	208257636	6	5	56	0	1	1	0	1	0	0	0	0	12215	870	30	0		0	PLXNA2	1	208257636	Intron	DEL	CCGGAAGCCA	TCGA-17-Z025-01A-01W-0746-08	3287424	208257636	40992985	73	62276											
LAMB3	3914	broad.mit.edu	37	chr1	209797435	209797435	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagcaactgctactgagtCagaacaaacagagaccttgg	10	10	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209797435	A	A	209797435	1	1	56	0	1	0	0	0	0	0	0	0	8684	841	29	3		3	LAMB3	1	209797435	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1539799	209797435	39453186	74	62277											
KCNK2	3776	broad.mit.edu	37	chr1	215342705	215342705	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggaagatacgtttattgtGagtatgatagatatttaact	10	2	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215342705	T	T	215342705	1	4	56	0	1	0	0	0	0	0	0	0	8136	1305	45	3		3	KCNK2	1	215342705	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5545270	215342705	33907916	75	62278											
USH2A	7399	broad.mit.edu	37	chr1	216380527	216380527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccagacagaggaaaccaCaacagcatttatcctcaatg	8	11	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216380527	A	A	216380527	1	1	56	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	216380527	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1037822	216380527	32870094	76	62279											
AIDA	64853	broad.mit.edu	37	chr1	222849665	222849665	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaactgacttagtaactaGccaggcattattttggttcc	8	8	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222849665	A	A	222849665	1	1	56	0	1	0	0	0	0	0	0	0	423	986	34	4		4	AIDA	1	222849665	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6469138	222849665	26400956	77	62280											
TMEM63A	9725	broad.mit.edu	37	chr1	226046847	226046847	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttccccacccaccaagccCtcttctcaccagctatcctg	3	22	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226046847	T	T	226046847	1	4	56	0	1	0	0	0	0	0	0	0	16313	696	24	4		4	TMEM63A	1	226046847	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3197182	226046847	23203774	78	62281											
SNAP47	116841	broad.mit.edu	37	chr1	227935377	227935377	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacggcagaacgttactGtctcttctccttcagaggca	11	11	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227935377	C	C	227935377	1	2	56	0	1	0	0	0	0	0	0	0	14946	1392	48	4		4	SNAP47	1	227935377	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1888530	227935377	21315244	79	62282											
PCNXL2	80003	broad.mit.edu	37	chr1	233236775	233236775	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttaaagatgcatgcagttCaaagtgagagaacaggaaga	12	4	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233236775	G	G	233236775	1	3	56	0	1	0	0	0	0	0	0	0	11686	841	29	4		4	PCNXL2	1	233236775	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5301398	233236775	16013846	80	62283											
GNG4	2786	broad.mit.edu	37	chr1	235715384	235715384	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactttgaaggtcagaaaaGgaggcgttttcatcacacac	11	8	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235715384	A	A	235715384	1	1	56	0	1	0	0	0	0	0	0	0	6593	1015	35	4		4	GNG4	1	235715384	3'UTR	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2478609	235715384	13535237	81	62284											
NID1	4811	broad.mit.edu	37	chr1	236177011	236177011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccccactcctcactgggCtggtactactgctttcaccg	8	17	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236177011	A	A	236177011	1	1	56	0	1	0	0	0	0	0	0	0	10509	812	28	3		3	NID1	1	236177011	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	461627	236177011	13073610	82	62285											
RYR2	6262	broad.mit.edu	37	chr1	237619799	237619799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattagtagatgaaccttcaGtcagacttctatttttaaat	6	6	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237619799	T	T	237619799	1	4	56	0	1	0	0	0	0	0	0	0	13880	1044	36	3		3	RYR2	1	237619799	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1442788	237619799	11630822	83	62286											
RYR2	6262	broad.mit.edu	37	chr1	237765336	237765336	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatttcaggtggaaccgagTacaaaattatttcctgcggt	10	7	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237765336	C	C	237765336	2	2	56	1	0	0	0	0	0	0	0	1	13880	1635	57	5		5	RYR2	1	237765336	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	145537	237765336	11485285	84	62287											
RYR2	6262	broad.mit.edu	37	chr1	237796720	237796720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattgactcagggacgagGcaaatcgtagtctgcacatt	10	9	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237796720	T	T	237796720	1	4	56	0	1	0	0	0	0	0	0	0	13880	1218	42	3		3	RYR2	1	237796720	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	31384	237796720	11453901	85	62288											
RYR2	6262	broad.mit.edu	37	chr1	237872294	237872294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaagctgaggccaggggGgacatgtcggaggcagaact	17	8	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237872294	T	T	237872294	2	4	56	1	0	0	0	0	0	0	0	1	13880	1219	43	2		2	RYR2	1	237872294	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	75574	237872294	11378327	86	62289											
RYR2	6262	broad.mit.edu	37	chr1	237924654	237924654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaaccacatagatgaacCtttcaagaacatttgacttt	4	9	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237924654	A	A	237924654	1	1	56	0	1	0	0	0	0	0	0	0	13880	696	24	2		2	RYR2	1	237924654	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	52360	237924654	11325967	87	62290											
ZP4	57829	broad.mit.edu	37	chr1	238053033	238053033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaggattgcccatggagGtgagagttgggacatgatcc	14	8	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053033	T	T	238053033	1	4	56	0	1	0	0	0	0	0	0	0	18347	1276	44	3		3	ZP4	1	238053033	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	128379	238053033	11197588	88	62291											
FMN2	56776	broad.mit.edu	37	chr1	240341343	240341343	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaaacctcccgatgaggaAcacaggctcgaggatgctga	11	12	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240341343	T	T	240341343	3	4	56	1	0	0	0	0	1	0	0	0	6008	40	2	5	1915	5	FMN2	1	240341343	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2288310	240341343	8909278	89	62292											
FMN2	56776	broad.mit.edu	37	chr1	240492906	240492906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagtcccacagaagggaaCattttatgattgaccttcaa	8	10	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240492906	A	A	240492906	1	1	56	0	1	0	0	0	0	0	0	0	6008	493	17	3		3	FMN2	1	240492906	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	151563	240492906	8757715	90	62293											
PLD5	200150	broad.mit.edu	37	chr1	242481247	242481247	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcctcaatgcctctgaatGctactgttcatgggactgca	9	12	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242481247	C	C	242481247	1	2	56	0	1	0	0	0	0	0	0	0	12144	1334	46	4		4	PLD5	1	242481247	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1988341	242481247	6769374	91	62294											
SMYD3	64754	broad.mit.edu	37	chr1	246165822	246165822	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagagacggggtttcaccAtgttagccaggatggtctcg	14	8	2	1	rs75154600		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246165822	G	G	246165822	1	3	56	0	1	0	0	0	0	0	0	0	14937	232	8	5		5	SMYD3	1	246165822	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	3684575	246165822	3084799	92	62295											
SMYD3	64754	broad.mit.edu	37	chr1	246513285	246513285	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattaaaagacaggaatggtCgcagtggatcaagacacaaa	10	6	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246513285	A	A	246513285	1	1	56	0	1	0	0	0	0	0	0	0	14937	899	31	3		3	SMYD3	1	246513285	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	347463	246513285	2737336	93	62296											
ZNF695	57116	broad.mit.edu	37	chr1	247150661	247150661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccaggtaaaagctttgcCacattcctcacatttgtatg	7	10	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247150661	A	A	247150661	3	1	56	1	0	0	0	0	1	0	0	0	18225	594	21	2	395	2	ZNF695	1	247150661	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	637376	247150661	2099960	94	62297											
OR13G1	441933	broad.mit.edu	37	chr1	247836151	247836151	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagatgatgtccacaaCagccagtgtcagaaggaaaa	11	8	1	3	rs141463427		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247836151	G	G	247836151	3	3	56	1	0	0	0	0	1	0	0	0	11036	478	17	4	734	4	OR13G1	1	247836151	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	685490	247836151	1414470	95	62298											
OR2G6	391211	broad.mit.edu	37	chr1	248685578	248685578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtctttctaattgtcccgGtgttactcatcttagtctcc	6	11	5	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248685578	A	A	248685578	3	1	56	1	0	0	0	0	1	0	0	0	11094	1261	44	4	633	4	OR2G6	1	248685578	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	849427	248685578	565043	96	62299											
MYT1L	23040	broad.mit.edu	37	chr2	2229063	2229063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggttaccaaccagggcaGggggttgtagttggcctccc	16	10	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2229063	T	T	2229063	1	4	56	0	1	0	0	0	0	0	0	0	10201	1015	35	2		2	MYT1L	2	2229063	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08		2229063	240970310	97	62300											
ALLC	55821	broad.mit.edu	37	chr2	3743369	3743369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagactggactgcaactgacCccaaagaacctgcagaccta	8	13	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3743369	A	A	3743369	3	1	56	1	0	0	0	0	1	0	0	0	534	623	22	2	600	2	ALLC	2	3743369	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1514306	3743369	239456004	98	62301											
NBAS	51594	broad.mit.edu	37	chr2	15386637	15386637	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacaagtgcaataaaattAcatgttctcaacatgtccct	4	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15386637	G	G	15386637	1	3	56	0	1	0	0	0	0	0	0	0	10280	406	14	5		5	NBAS	2	15386637	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	11643268	15386637	227812736	99	62302											
APOB	338	broad.mit.edu	37	chr2	21236288	21236288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacagacttgaagtggagGgctggtgtcctaacagtctc	12	11	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21236288	T	T	21236288	2	4	56	1	0	0	0	0	0	0	0	1	787	1219	43	2		2	APOB	2	21236288	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5849651	21236288	221963085	100	62303											
ATAD2B	54454	broad.mit.edu	37	chr2	23977657	23977657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcacctataattgagaCaaaaaaatacactgcagcaa	6	8	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23977657	A	A	23977657	1	1	56	0	1	0	0	0	0	0	0	0	1076	493	17	3		3	ATAD2B	2	23977657	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2741369	23977657	219221716	101	62304											
ADCY3	109	broad.mit.edu	37	chr2	25059851	25059851	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgggcactcccgttgggctCcttggtctcaatgagggcag	15	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25059851	T	T	25059851	3	4	56	1	0	0	0	0	1	0	0	0	295	864	30	4	1893	4	ADCY3	2	25059851	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1082194	25059851	218139522	102	62305											
PLB1	151056	broad.mit.edu	37	chr2	28855912	28855912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggaacaacatggtgagCagccaaggcctggtgggcct	14	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28855912	A	A	28855912	1	1	56	0	1	0	0	0	0	0	0	0	12119	725	25	3		3	PLB1	2	28855912	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3796061	28855912	214343461	103	62306											
ALK	238	broad.mit.edu	37	chr2	29917779	29917779	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagtccatctgggaggcctCctcggaggggatgcggcgcc	16	13	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29917779	A	A	29917779	4	1	56	1	0	0	0	0	0	1	0	0	525	864	30	3	4081	3	ALK	2	29917779	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1061867	29917779	213281594	104	62307											
NLRC4	58484	broad.mit.edu	37	chr2	32458251	32458251	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaggaaggaaggaaggAaggaaggaaggaagggaggg	22	0	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32458251	G	G	32458251	1	3	56	0	1	0	0	0	0	0	0	0	10564	261	9	5		5	NLRC4	2	32458251	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2540472	32458251	210741122	105	62308											
BIRC6	57448	broad.mit.edu	37	chr2	32673741	32673741	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggggagaggggagagGggagaggggagagggagagc	28	1	0	6			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32673741	A	A	32673741	1	1	56	0	1	0	0	0	0	0	0	0	1444	1247	43	4		4	BIRC6	2	32673741	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	215490	32673741	210525632	106	62309											
LTBP1	4052	broad.mit.edu	37	chr2	33525459	33525459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagaatgcattgcagggaGcactgcattctcctgggtag	12	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33525459	T	T	33525459	1	4	56	0	1	0	0	0	0	0	0	0	9160	986	34	3		3	LTBP1	2	33525459	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	851718	33525459	209673914	107	62310											
LTBP1	4052	broad.mit.edu	37	chr2	33622279	33622279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatggtcgctgtgtgagGgtccaggaaggttacacctg	15	7	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33622279	T	T	33622279	3	4	56	1	0	0	0	0	1	0	0	0	9160	1223	43	2	5099	2	LTBP1	2	33622279	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	96820	33622279	209577094	108	62311											
VIT	5212	broad.mit.edu	37	chr2	36982177	36982178	+	Missense_Mutation	DNP	GA	TT	TT													gttatccctaccacgatggaGagaatcctttatcgtcttag							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36982178	TT	TT	36982177	3	4	56	1	0	0	0	0	1	0	0	0	17298	942	33	3	403	3	VIT	2	36982177	Missense_Mutation	DNP	GA	TCGA-17-Z025-01A-01W-0746-08	3359898	36982177	206217196	109	62312											
LRPPRC	10128	broad.mit.edu	37	chr2	44190820	44190821	+	Frame_Shift_Ins	INS	-	A	A													gatgtactcccaattcttgcINSattcctttgaggatttcaat							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44190821	A	A	44190820	7	5	56	1	0	1	1	0	0	0	0	0	9052	710	25	0	2897	0	LRPPRC	2	44190820	Frame_Shift_Ins	INS	-	TCGA-17-Z025-01A-01W-0746-08	7208643	44190820	199008553	110	62313											
NRXN1	9378	broad.mit.edu	37	chr2	50171358	50171358	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccataaccttttacactcacGactatgtagagtttgatgaa	6	9	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50171358	T	T	50171358	1	4	56	0	1	0	0	0	0	0	0	0	10760	1073	37	3		3	NRXN1	2	50171358	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5980538	50171358	193028015	111	62314											
NRXN1	9378	broad.mit.edu	37	chr2	50663800	50663800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggagatgagtagcagaaCcagtcatggaatcaacattt	10	7	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50663800	A	A	50663800	1	1	56	0	1	0	0	0	0	0	0	0	10760	522	18	3		3	NRXN1	2	50663800	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	492442	50663800	192535573	112	62315											
BCL11A	53335	broad.mit.edu	37	chr2	60773526	60773526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccccatgccatcccaccaCatcatgtaaagtgtttctag	5	14	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60773526	A	A	60773526	1	1	56	0	1	0	0	0	0	0	0	0	1368	493	17	3		3	BCL11A	2	60773526	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	10109726	60773526	182425847	113	62316											
SNRNP27	11017	broad.mit.edu	37	chr2	70129595	70129595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctcttgcttcttcttcGgcttctgctgctgctgtttc	9	13	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70129595	T	T	70129595	1	4	56	0	1	0	0	0	0	0	0	0	14968	1131	39	1		1	SNRNP27	2	70129595	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9356069	70129595	173069778	114	62317											
ADD2	119	broad.mit.edu	37	chr2	70848261	70848261	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatcttggcaccacactTcaatctcccccttctcttaa	2	16	5	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70848261	A	A	70848261	1	1	56	0	1	0	0	0	0	0	0	0	305	1798	62	5		5	ADD2	2	70848261	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	718666	70848261	172351112	115	62318											
ZNF638	27332	broad.mit.edu	37	chr2	71607202	71607202	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagatgtaaaattaggctgtGtaatcacaaattgaaaaaaa	8	3	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71607202	C	C	71607202	1	2	56	0	1	0	0	0	0	0	0	0	18182	1392	48	4		4	ZNF638	2	71607202	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	758941	71607202	171592171	116	62319											
ZNF638	27332	broad.mit.edu	37	chr2	71607741	71607741	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatgagtgtatcttgtcAgtttagtagaaacttagatg	9	4	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71607741	T	T	71607741	1	4	56	0	1	0	0	0	0	0	0	0	18182	203	7	5		5	ZNF638	2	71607741	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	539	71607741	171591632	117	62320											
C2orf78	388960	broad.mit.edu	37	chr2	74042111	74042111	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtagaaatgccttgcccatGttggaaaggtatccgattgc	11	8	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74042111	C	C	74042111	1	2	56	0	1	0	0	0	0	0	0	0	2217	1392	48	4		4	C2orf78	2	74042111	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2434370	74042111	169157262	118	62321											
C2orf89	129293	broad.mit.edu	37	chr2	85057889	85057889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatccaggatttcccgcCtgaagggagactggcaggag	14	9	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85057889	A	A	85057889	1	1	56	0	1	0	0	0	0	0	0	0	2225	696	24	2		2	C2orf89	2	85057889	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	11015778	85057889	158141484	119	62322											
GGCX	2677	broad.mit.edu	37	chr2	85783362	85783362	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggcattcctcctatgggcAttcagcagaccgtccacaga	10	13	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85783362	C	C	85783362	3	2	56	1	0	0	0	0	1	0	0	0	6420	214	8	5	1759	5	GGCX	2	85783362	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	725473	85783362	157416011	120	62323											
RMND5A	64795	broad.mit.edu	37	chr2	87131233	87131233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctattgtgtcattttttGgcactattttactttttact	4	6	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87131233	T	T	87131233	1	4	56	0	1	0	0	0	0	0	0	0	13508	1363	47	2		2	RMND5A	2	87131233	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1347871	87131233	156068140	121	62324											
VWA3B	200403	broad.mit.edu	37	chr2	98779317	98779317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtctccccttttaggagCtggagtcagagaggacgtgt	14	8	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98779317	A	A	98779317	3	1	56	1	0	0	0	0	1	0	0	0	17368	797	28	3	1018	3	VWA3B	2	98779317	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	11648084	98779317	144420056	122	62325											
PSD4	23550	broad.mit.edu	37	chr2	113953245	113953245	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctacctctgccagacaaaGagactttaggctccacagcc	7	15	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113953245	T	T	113953245	1	4	56	0	1	0	0	0	0	0	0	0	12755	957	33	3		3	PSD4	2	113953245	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	15173928	113953245	129246128	123	62326											
DPP10	57628	broad.mit.edu	37	chr2	116268762	116268762	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattttttttaatgtttcaTggaactcactgatgatacca	7	6	2	2	rs35359921		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116268762	C	C	116268762	1	2	56	0	1	0	0	0	0	0	0	0	4767	1479	51	5		5	DPP10	2	116268762	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2315517	116268762	126930611	124	62327											
INSIG2	51141	broad.mit.edu	37	chr2	118856411	118856411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaaacttaacctcatttgGggaatttgcatttacatttc	5	8	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118856411	T	T	118856411	1	4	56	0	1	0	0	0	0	0	0	0	7836	1247	43	2		2	INSIG2	2	118856411	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2587649	118856411	124342962	125	62328											
CNTNAP5	129684	broad.mit.edu	37	chr2	125611432	125611432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttttgttcccctctttGtgtccatgagttctcatcat	5	12	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125611432	T	T	125611432	1	4	56	0	1	0	0	0	0	0	0	0	3682	1392	48	3		3	CNTNAP5	2	125611432	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6755021	125611432	117587941	126	62329											
GYPC	2995	broad.mit.edu	37	chr2	127451562	127451562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttcaagcagccagggtGgggggccttggtgaaaacat	15	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127451562	T	T	127451562	1	4	56	0	1	0	0	0	0	0	0	0	6975	1363	47	2		2	GYPC	2	127451562	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1840130	127451562	115747811	127	62330											
LRP1B	53353	broad.mit.edu	37	chr2	141027816	141027816	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattaaatactcacagacaCacaggtacatttgtctcggg	8	9	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141027816	T	T	141027816	2	4	56	1	0	0	0	0	0	0	0	1	9042	465	17	4		4	LRP1B	2	141027816	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	13576254	141027816	102171557	128	62331											
LRP1B	53353	broad.mit.edu	37	chr2	141172806	141172806	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagactcttatcagtagttcTgcttttgccctctgccttgt	7	11	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141172806	A	A	141172806	1	1	56	0	1	0	0	0	0	0	0	0	9042	1595	55	5		5	LRP1B	2	141172806	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	144990	141172806	102026567	129	62332											
LRP1B	53353	broad.mit.edu	37	chr2	142271601	142271601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatagtttctgagactctGcctcctctcagttcctcagt	7	12	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142271601	T	T	142271601	1	4	56	0	1	0	0	0	0	0	0	0	9042	1334	46	3		3	LRP1B	2	142271601	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1098795	142271601	100927772	130	62333											
GTDC1	79712	broad.mit.edu	37	chr2	144704709	144704709	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcgatttcaccctgcaaCgaggaggagggagagaagag	17	7	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144704709	T	T	144704709	1	4	56	0	1	0	0	0	0	0	0	0	6916	551	19	4		4	GTDC1	2	144704709	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2433108	144704709	98494664	131	62334											
GALNT13	114805	broad.mit.edu	37	chr2	154759230	154759230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggttcagggagtaataGtaataattaatgcttgtgca	10	4	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154759230	T	T	154759230	1	4	56	0	1	0	0	0	0	0	0	0	6273	1044	36	3		3	GALNT13	2	154759230	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10054521	154759230	88440143	132	62335											
KCNJ3	3760	broad.mit.edu	37	chr2	155698054	155698054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacctttggtagaatttgGctatgaatccgtctggtcct	10	8	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155698054	T	T	155698054	1	4	56	0	1	0	0	0	0	0	0	0	8122	1218	42	3		3	KCNJ3	2	155698054	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	938824	155698054	87501319	133	62336											
UPP2	151531	broad.mit.edu	37	chr2	158964303	158964303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatgggtgggtgtcctgGcagtgaggtgacccaccctt	17	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158964303	T	T	158964303	1	4	56	0	1	0	0	0	0	0	0	0	17139	1218	42	3		3	UPP2	2	158964303	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3266249	158964303	84235070	134	62337											
GRB14	2888	broad.mit.edu	37	chr2	165383519	165383519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactattaggagggatttcaCttaccattgggtttttaaag	9	5	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165383519	A	A	165383519	1	1	56	0	1	0	0	0	0	0	0	0	6823	580	20	3		3	GRB14	2	165383519	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6419216	165383519	77815854	135	62338											
GORASP2	26003	broad.mit.edu	37	chr2	171806362	171806362	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggatattattaataggCaatttttgccaaaaatcagc	7	5	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171806362	T	T	171806362	1	4	56	0	1	0	0	0	0	0	0	0	6640	725	25	4		4	GORASP2	2	171806362	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6422843	171806362	71393011	136	62339											
ATF2	1386	broad.mit.edu	37	chr2	176001206	176001206	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcacattctttttctcatgGcaagaatactgaaaaacaaa	4	8	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176001206	A	A	176001206	1	1	56	0	1	0	0	0	0	0	0	0	1084	1218	42	4		4	ATF2	2	176001206	5'UTR	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4194844	176001206	67198167	137	62340											
PDE11A	50940	broad.mit.edu	37	chr2	178565928	178565928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatagagttgggccaggGcagagccactcctgaaagag	13	10	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178565928	T	T	178565928	3	4	56	1	0	0	0	0	1	0	0	0	11725	1203	42	3	664	3	PDE11A	2	178565928	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2564722	178565928	64633445	138	62341											
TTN	7273	broad.mit.edu	37	chr2	179590742	179590742	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatttttaagggtttctacTataggagggaagctgctaaa	11	5	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179590742	A	A	179590742	2	1	56	1	0	0	0	0	0	0	0	1	16861	1512	53	5		5	TTN	2	179590742	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1024814	179590742	63608631	139	62342											
SSFA2	6744	broad.mit.edu	37	chr2	182785416	182785416	+	Intron	DEL	G	-	-													ttctttcctcttaaatcactGgggaagggaatgatacaaca							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182785416	-	-	182785416	6	5	56	0	1	1	0	1	0	0	0	0	15301	1363	47	0		0	SSFA2	2	182785416	Intron	DEL	G	TCGA-17-Z025-01A-01W-0746-08	3194674	182785416	60413957	140	62343											
ANKRD44	91526	broad.mit.edu	37	chr2	197858365	197858365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaactcctcaactaccacCtttaagccattgcgcgcagc	6	16	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197858365	A	A	197858365	3	1	56	1	0	0	0	0	1	0	0	0	672	696	24	2		2	ANKRD44	2	197858365	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	15072949	197858365	45341008	141	62344											
PARD3B	117583	broad.mit.edu	37	chr2	205989156	205989156	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagggagcagcaataaaagAtggccgcctacaatcagggg	13	8	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205989156	G	G	205989156	3	3	56	1	0	0	0	0	1	0	0	0	11538	333	12	5	1305	5	PARD3B	2	205989156	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	8130791	205989156	37210217	142	62345											
PARD3B	117583	broad.mit.edu	37	chr2	206150172	206150172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtgcattagagtgactAtgtttggatccagggtcact	11	8	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206150172	G	G	206150172	1	3	56	0	1	0	0	0	0	0	0	0	11538	464	16	5		5	PARD3B	2	206150172	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	161016	206150172	37049201	143	62346											
PARD3B	117583	broad.mit.edu	37	chr2	206440512	206440512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttactaaaggacatcttGgttgcctccaggttttgacc	8	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206440512	T	T	206440512	1	4	56	0	1	0	0	0	0	0	0	0	11538	1363	47	2		2	PARD3B	2	206440512	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	290340	206440512	36758861	144	62347											
CCNYL1	151195	broad.mit.edu	37	chr2	208611892	208611892	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacgatcaggctgtatggaAtgtggactactgccagatcc	13	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208611892	T	T	208611892	3	4	56	1	0	0	0	0	1	0	0	0	2967	101	4	5	791	5	CCNYL1	2	208611892	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2171380	208611892	34587481	145	62348											
PECR	55825	broad.mit.edu	37	chr2	216884141	216884141	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcttggctttgcctccctGaagagaaacagacactatct	8	12	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216884141	T	T	216884141	1	4	56	0	1	0	0	0	0	0	0	0	11811	1305	45	3		3	PECR	2	216884141	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	8272249	216884141	26315232	146	62349											
MARCH4	57574	broad.mit.edu	37	chr2	217214873	217214873	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgccatgccacaccaccacGaccatgctatgccatggcat	7	17	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217214873	T	T	217214873	1	4	56	0	1	0	0	0	0	0	0	0	9395	1073	37	3		3	MARCH4	2	217214873	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	330732	217214873	25984500	147	62350											
TNS1	7145	broad.mit.edu	37	chr2	218670343	218670343	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccacacacaccacacacaTacacaccatcacacccacac	0	22	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	218670343	C	C	218670343	1	2	56	0	1	0	0	0	0	0	0	0	16466	1421	49	5		5	TNS1	2	218670343	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1455470	218670343	24529030	148	62351											
SPEG	10290	broad.mit.edu	37	chr2	220333907	220333907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagatgccatccattcCcgaggagccagagcagggtg	15	10	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220333907	A	A	220333907	3	1	56	1	0	0	0	0	1	0	0	0	15154	623	22	2	3583	2	SPEG	2	220333907	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1663564	220333907	22865466	149	62352											
FAM124B	79843	broad.mit.edu	37	chr2	225244581	225244581	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgtcaacattcgtctcGgcctcaagcttctgaaagct	9	13	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225244581	T	T	225244581	2	4	56	1	0	0	0	0	0	0	0	1	5472	1103	39	1		1	FAM124B	2	225244581	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4910674	225244581	17954792	150	62353											
NGEF	25791	broad.mit.edu	37	chr2	233785158	233785158	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccggctcctcctcctcctCctcttcttcttcctcctccg	5	22	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233785158	A	A	233785158	4	1	56	1	0	0	0	0	0	1	0	0	10489	864	30	3	1512	3	NGEF	2	233785158	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8540577	233785158	9414215	151	62354											
SUMF1	285362	broad.mit.edu	37	chr3	4297382	4297382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccattgtcaacattagaCagatcaacgagacagaaagt	7	10	2	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4297382	A	A	4297382	1	1	56	0	1	0	0	0	0	0	0	0	15503	493	17	3		3	SUMF1	3	4297382	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08		4297382	193725048	152	62355											
SLC6A11	6538	broad.mit.edu	37	chr3	10881996	10881996	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggggcctttctcctgcatAtgccccccacttctttgcta	8	15	2	0	rs113649280	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10881996	G	G	10881996	1	3	56	0	1	0	0	0	0	0	0	0	14788	464	16	5		5	SLC6A11	3	10881996	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	6584614	10881996	187140434	153	62356											
HRH1	3269	broad.mit.edu	37	chr3	11272196	11272196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcttatgaacccaacctGgatgtaaccacagtgtaaaa	6	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11272196	T	T	11272196	1	4	56	0	1	0	0	0	0	0	0	0	7422	1363	47	2		2	HRH1	3	11272196	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	390200	11272196	186750234	154	62357											
TBC1D5	9779	broad.mit.edu	37	chr3	17747525	17747525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccagcctggacttacaCcatgttctttaaggtgggag	10	11	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17747525	A	A	17747525	1	1	56	0	1	0	0	0	0	0	0	0	15745	522	18	3		3	TBC1D5	3	17747525	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6475329	17747525	180274905	155	62358											
UBE2E2	7325	broad.mit.edu	37	chr3	23574055	23574055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcttgtaggttaccttccGaacaagaatctatcactgta	6	9	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23574055	T	T	23574055	3	4	56	1	0	0	0	0	1	0	0	0	16979	1058	37	3	385	3	UBE2E2	3	23574055	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5826530	23574055	174448375	156	62359											
RARB	5915	broad.mit.edu	37	chr3	25632055	25632055	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtctcactctgtcacccAggctgaagtgcagtggcgtg	14	11	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25632055	G	G	25632055	1	3	56	0	1	0	0	0	0	0	0	0	13161	203	7	5		5	RARB	3	25632055	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2058000	25632055	172390375	157	62360											
NEK10	152110	broad.mit.edu	37	chr3	27161276	27161276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcatttggggacaggctGtttccaccggatgaacgatg	15	8	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27161276	T	T	27161276	3	4	56	1	0	0	0	0	1	0	0	0	10417	1392	48	3		3	NEK10	3	27161276	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1529221	27161276	170861154	158	62361											
ULK4	54986	broad.mit.edu	37	chr3	41504623	41504623	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtataggtcagcatgctGtgcaaaatatcaagcaggga	13	6	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41504623	A	A	41504623	2	1	56	1	0	0	0	0	0	0	0	1	17104	1368	48	4		4	ULK4	3	41504623	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	14343347	41504623	156517807	159	62362											
CAMKV	79012	broad.mit.edu	37	chr3	49897636	49897637	+	Missense_Mutation	DNP	TC	AA	AA													cctggcaaagttcttttcaaTctgggcacagacaccatcct							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	49897637	AA	AA	49897636	3	1	56	1	0	0	0	0	1	0	0	0	2634	1435	50	5	603	5	CAMKV	3	49897636	Missense_Mutation	DNP	TC	TCGA-17-Z025-01A-01W-0746-08	8393013	49897636	148124794	160	62363											
NAT6	24142	broad.mit.edu	37	chr3	50334635	50334635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagtgcaggcgggaggtgCggctgcggggccactgatca	21	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50334635	T	T	50334635	3	4	56	1	0	0	0	0	1	0	0	0	10272	768	27	4	604	4	NAT6	3	50334635	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	436999	50334635	147687795	161	62364											
CACNA2D3	55799	broad.mit.edu	37	chr3	54690662	54690662	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtgcagaaaattaggGgcccacaggcctggcagcca	13	12	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54690662	A	A	54690662	1	1	56	0	1	0	0	0	0	0	0	0	2576	1247	43	4		4	CACNA2D3	3	54690662	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4356027	54690662	143331768	162	62365											
C3orf67	200844	broad.mit.edu	37	chr3	58817568	58817568	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcttgctagcatctgtaaCtcggattcactcatctggct	9	11	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58817568	T	T	58817568	2	4	56	1	0	0	0	0	0	0	0	1	2263	564	20	4		4	C3orf67	3	58817568	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4126906	58817568	139204862	163	62366											
FAM19A1	407738	broad.mit.edu	37	chr3	68194303	68194303	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtttgctccgtaatgacatGaataatgcaagatatctttg	8	6	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68194303	T	T	68194303	1	4	56	0	1	0	0	0	0	0	0	0	5578	1305	45	3		3	FAM19A1	3	68194303	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9376735	68194303	129828127	164	62367											
PDZRN3	23024	broad.mit.edu	37	chr3	73647838	73647838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagattcccagccacagCcccaggacaggccagctcag	9	19	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73647838	A	A	73647838	1	1	56	0	1	0	0	0	0	0	0	0	11803	754	26	3		3	PDZRN3	3	73647838	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5453535	73647838	124374592	165	62368											
ROBO1	6091	broad.mit.edu	37	chr3	78940031	78940031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgatccccgtgcctcagCctccagagtagctaagatta	9	12	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78940031	A	A	78940031	1	1	56	0	1	0	0	0	0	0	0	0	13624	754	26	3		3	ROBO1	3	78940031	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5292193	78940031	119082399	166	62369											
CADM2	253559	broad.mit.edu	37	chr3	85775707	85775707	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaagttaaaggtgagctcCtgtttattctgcatgagtca	9	6	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85775707	T	T	85775707	1	4	56	0	1	0	0	0	0	0	0	0	2593	696	24	4		4	CADM2	3	85775707	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6835676	85775707	112246723	167	62370											
VGLL3	389136	broad.mit.edu	37	chr3	87018027	87018027	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgcatatggctgtaggatGggctcacctgagatgtcaaa	12	8	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87018027	C	C	87018027	3	2	56	1	0	0	0	0	1	0	0	0	17287	1348	47	4	338	4	VGLL3	3	87018027	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1242320	87018027	111004403	168	62371											
HTR1F	3355	broad.mit.edu	37	chr3	88040437	88040437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaagcacgaccacattGtttccaccatttactcaaca	3	14	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88040437	T	T	88040437	3	4	56	1	0	0	0	0	1	0	0	0	7510	1377	48	3	540	3	HTR1F	3	88040437	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1022410	88040437	109981993	169	62372											
EPHA3	2042	broad.mit.edu	37	chr3	89499516	89499516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcatcaccagtgcagccGcaaggtgacacattcaattt	8	11	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89499516	T	T	89499516	3	4	56	1	0	0	0	0	1	0	0	0	5210	1087	38	3	2770	3	EPHA3	3	89499516	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1459079	89499516	108522914	170	62373											
EPHA6	285220	broad.mit.edu	37	chr3	96706208	96706208	+	Frame_Shift_Del	DEL	G	-	-													tgaaatggatgaacataataGgcccattcacacataccagg							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96706208	-	-	96706208	7	5	56	1	0	1	0	1	0	0	0	0	5213	1000	35	0	495	0	EPHA6	3	96706208	Frame_Shift_Del	DEL	G	TCGA-17-Z025-01A-01W-0746-08	7206692	96706208	101316222	171	62374											
EPHA6	285220	broad.mit.edu	37	chr3	96909643	96909643	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgggtgcagcgcaccagcAtggcacatgtatacatatgt	12	9	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96909643	T	T	96909643	1	4	56	0	1	0	0	0	0	0	0	0	5213	232	8	5		5	EPHA6	3	96909643	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	203435	96909643	101112787	172	62375											
TMEM45A	55076	broad.mit.edu	37	chr3	100273808	100273808	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaagactgaacataaaacaCttgacacagtgcagagtaca	8	8	0	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100273808	G	G	100273808	1	3	56	0	1	0	0	0	0	0	0	0	16292	580	20	4		4	TMEM45A	3	100273808	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3364165	100273808	97748622	173	62376											
GPR128	84873	broad.mit.edu	37	chr3	100365438	100365438	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaagaatttcaactctAttcctatgcctgtgtctatt	4	10	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100365438	C	C	100365438	3	2	56	1	0	0	0	0	1	0	0	0	6706	449	16	5	1174	5	GPR128	3	100365438	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	91630	100365438	97656992	174	62377											
MORC1	27136	broad.mit.edu	37	chr3	108723574	108723574	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagttaagcatttttcctAtaaagcattgaatgcaaaac	5	6	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108723574	G	G	108723574	1	3	56	0	1	0	0	0	0	0	0	0	9795	464	16	5		5	MORC1	3	108723574	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	8358136	108723574	89298856	175	62378											
DPPA2	151871	broad.mit.edu	37	chr3	109023523	109023523	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaccacctgacgcctggaAaggaaaaacaaatatagaca	7	11	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109023523	T	T	109023523	1	4	56	0	1	0	0	0	0	0	0	0	4774	29	1	5		5	DPPA2	3	109023523	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	299949	109023523	88998907	176	62379											
CD200R1	131450	broad.mit.edu	37	chr3	112643970	112643970	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaaccaaatgaatcccacGatggtcaaaataataatagt	5	8	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112643970	T	T	112643970	2	4	56	1	0	0	0	0	0	0	0	1	3011	1048	37	3		3	CD200R1	3	112643970	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3620447	112643970	85378460	177	62380											
LSAMP	4045	broad.mit.edu	37	chr3	116163718	116163718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaaagttgcccgaaagCcctacctgaggatggctgtg	13	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116163718	A	A	116163718	1	1	56	0	1	0	0	0	0	0	0	0	9135	754	26	3		3	LSAMP	3	116163718	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3519748	116163718	81858712	178	62381											
ADCY5	111	broad.mit.edu	37	chr3	123121965	123121965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagacacggtggctcacGcctgtactcccagcatttcg	11	15	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123121965	T	T	123121965	1	4	56	0	1	0	0	0	0	0	0	0	297	1102	38	3		3	ADCY5	3	123121965	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6958247	123121965	74900465	179	62382											
MYLK	4638	broad.mit.edu	37	chr3	123451651	123451651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgcaccaaggcaggggGctataggagatgaaccatct	14	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123451651	T	T	123451651	1	4	56	0	1	0	0	0	0	0	0	0	10150	1218	42	3		3	MYLK	3	123451651	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	329686	123451651	74570779	180	62383											
ALG1L	200810	broad.mit.edu	37	chr3	125651539	125651539	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggttgtgtccatcaagagtAagttgttcaaactctgtgtt	10	6	3	1	rs147593769	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125651539	C	C	125651539	2	2	56	1	0	0	0	0	0	0	0	1	517	349	13	5		5	ALG1L	3	125651539	Silent	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2199888	125651539	72370891	181	62384											
CPNE4	131034	broad.mit.edu	37	chr3	131405752	131405752	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatagccctgaacttcaGtttttctccccagccccatg	5	16	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131405752	T	T	131405752	1	4	56	0	1	0	0	0	0	0	0	0	3846	1044	36	3		3	CPNE4	3	131405752	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5754213	131405752	66616678	182	62385											
EPHB1	2047	broad.mit.edu	37	chr3	134840051	134840051	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttacctgcaaggctttcatCgtatgtgacctccatgcctg	8	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134840051	T	T	134840051	1	4	56	0	1	0	0	0	0	0	0	0	5216	899	31	4		4	EPHB1	3	134840051	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3434299	134840051	63182379	183	62386											
MME	4311	broad.mit.edu	37	chr3	154878148	154878148	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaatcagataatgcagtatCatttgtaaagagttcttatg	8	4	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154878148	A	A	154878148	1	1	56	0	1	0	0	0	0	0	0	0	9738	841	29	3		3	MME	3	154878148	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	20038097	154878148	43144282	184	62387											
KCNAB1	7881	broad.mit.edu	37	chr3	156032440	156032440	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgattaaaagctggtcatAagttaaagacatatgacaag	8	5	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156032440	C	C	156032440	1	2	56	0	1	0	0	0	0	0	0	0	8079	377	13	5		5	KCNAB1	3	156032440	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1154292	156032440	41989990	185	62388											
SI	6476	broad.mit.edu	37	chr3	164735438	164735438	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcccaaagcccaataagcTggcatgactggatggccaat	9	11	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164735438	G	G	164735438	2	3	56	1	0	0	0	0	0	0	0	1	14410	1567	55	5		5	SI	3	164735438	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	8702998	164735438	33286992	186	62389											
SI	6476	broad.mit.edu	37	chr3	164735848	164735848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaatccataggaattaaGtttgtactgaaatacgaaaa	7	4	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164735848	T	T	164735848	3	4	56	1	0	0	0	0	1	0	0	0	14410	1029	36	3	2133	3	SI	3	164735848	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	410	164735848	33286582	187	62390											
PDCD10	11235	broad.mit.edu	37	chr3	167422592	167422592	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttacatttacaaagaacaTacactttaataatcatagta	2	7	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167422592	C	C	167422592	1	2	56	0	1	0	0	0	0	0	0	0	11710	1421	49	5		5	PDCD10	3	167422592	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2686744	167422592	30599838	188	62391											
SAMD7	344658	broad.mit.edu	37	chr3	169656341	169656341	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagccagttttccaaagagcCtaggatattacaaaggatgt	9	7	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169656341	T	T	169656341	1	4	56	0	1	0	0	0	0	0	0	0	13935	696	24	4		4	SAMD7	3	169656341	3'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2233749	169656341	28366089	189	62392											
CLDN11	5010	broad.mit.edu	37	chr3	170465549	170465549	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatcacttcccaggacaAgaaattaaacaatgccagtc	6	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170465549	G	G	170465549	1	3	56	0	1	0	0	0	0	0	0	0	3504	87	3	5		5	CLDN11	3	170465549	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	809208	170465549	27556881	190	62393											
NDUFB5	4711	broad.mit.edu	37	chr3	179341712	179341712	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccatttgttacagggtaAaggagctggaagtgcgaaaa	13	5	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179341712	G	G	179341712	3	3	56	1	0	0	0	0	1	0	0	0	10379	15	1	5	476	5	NDUFB5	3	179341712	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	8876163	179341712	18680718	191	62394											
UTS2D	257313	broad.mit.edu	37	chr3	191018091	191018091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatgatccgcccacctcagCctcccaaagtgctgggatta	8	15	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191018091	T	T	191018091	1	4	56	0	1	0	0	0	0	0	0	0	17232	754	26	4		4	UTS2D	3	191018091	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	11676379	191018091	7004339	192	62395											
ZNF595	152687	broad.mit.edu	37	chr4	62490	62490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagtggcatacaggatttcCcttgtatgtatgtcttcttt	8	8	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62490	T	T	62490	1	4	56	0	1	0	0	0	0	0	0	0	18152	638	22	4		4	ZNF595	4	62490	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08		62490	191091786	193	62396											
STK32B	55351	broad.mit.edu	37	chr4	5080286	5080286	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgttggggattcaactaCgtccgaacctgtctgagctc	11	10	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5080286	T	T	5080286	1	4	56	0	1	0	0	0	0	0	0	0	15416	551	19	4		4	STK32B	4	5080286	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5017796	5080286	186073990	194	62397											
STK32B	55351	broad.mit.edu	37	chr4	5251161	5251161	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtctgttcttccttccttCctacctaccttccttccttc	2	18	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5251161	A	A	5251161	1	1	56	0	1	0	0	0	0	0	0	0	15416	870	30	3		3	STK32B	4	5251161	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	170875	5251161	185903115	195	62398											
BOD1L	259282	broad.mit.edu	37	chr4	13590377	13590377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttcaacactgtgaccgCttatggcttctgcgttgtct	9	12	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13590377	A	A	13590377	3	1	56	1	0	0	0	0	1	0	0	0	1489	797	28	3	954	3	BOD1L	4	13590377	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8339216	13590377	177563899	196	62399											
PROM1	8842	broad.mit.edu	37	chr4	15981094	15981094	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accattttccatactgtaacAgaaataaatacaccaaaaac	2	10	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15981094	T	T	15981094	1	4	56	0	1	0	0	0	0	0	0	0	12661	203	7	5		5	PROM1	4	15981094	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2390717	15981094	175173182	197	62400											
LDB2	9079	broad.mit.edu	37	chr4	16725237	16725237	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccccatcttatacctccAaactgtcttctcttgatttt	2	14	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16725237	G	G	16725237	1	3	56	0	1	0	0	0	0	0	0	0	8768	145	5	5		5	LDB2	4	16725237	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	744143	16725237	174429039	198	62401											
NCAPG	64151	broad.mit.edu	37	chr4	17834753	17834753	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccgtaatcccagcactttGggaggctgaggcaggttgat	13	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17834753	A	A	17834753	1	1	56	0	1	0	0	0	0	0	0	0	10302	1363	47	4		4	NCAPG	4	17834753	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1109516	17834753	173319523	199	62402											
SLIT2	9353	broad.mit.edu	37	chr4	20547749	20547749	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacatattgcacttttctttGacttactctatttccagaaa	3	9	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20547749	T	T	20547749	1	4	56	0	1	0	0	0	0	0	0	0	14854	1305	45	3		3	SLIT2	4	20547749	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2712996	20547749	170606527	200	62403											
KCNIP4	80333	broad.mit.edu	37	chr4	20731843	20731843	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtattgcctcctcccatcaAccacctcaaccacctatgcc	3	19	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20731843	G	G	20731843	1	3	56	0	1	0	0	0	0	0	0	0	8112	58	2	5		5	KCNIP4	4	20731843	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	184094	20731843	170422433	201	62404											
KCNIP4	80333	broad.mit.edu	37	chr4	21401795	21401795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagttcagtttaattcattGtattccattaggcatttgca	7	6	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21401795	T	T	21401795	1	4	56	0	1	0	0	0	0	0	0	0	8112	1392	48	3		3	KCNIP4	4	21401795	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	669952	21401795	169752481	202	62405											
KCNIP4	80333	broad.mit.edu	37	chr4	21716106	21716106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagagtcagacacagggaGgaaggagatagagacaggag	17	4	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21716106	T	T	21716106	1	4	56	0	1	0	0	0	0	0	0	0	8112	1015	35	2		2	KCNIP4	4	21716106	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	314311	21716106	169438170	203	62406											
GPR125	166647	broad.mit.edu	37	chr4	22481511	22481511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcattcccaacaaactaaCacaggaacagaaaaccaaat	3	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22481511	A	A	22481511	1	1	56	0	1	0	0	0	0	0	0	0	6704	493	17	3		3	GPR125	4	22481511	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	765405	22481511	168672765	204	62407											
WDR19	57728	broad.mit.edu	37	chr4	39233832	39233832	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccttgccatgtttaccaaCgattataacctggctcagga	7	12	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39233832	T	T	39233832	2	4	56	1	0	0	0	0	0	0	0	1	17406	535	19	4		4	WDR19	4	39233832	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	16752321	39233832	151920444	205	62408											
GABRA2	2555	broad.mit.edu	37	chr4	46307650	46307650	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtcatattgatttaacctaGagccatcaggagcaacctgt	9	9	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46307650	T	T	46307650	3	4	56	1	0	0	0	0	1	0	0	0	6221	942	33	3	733	3	GABRA2	4	46307650	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	7073818	46307650	144846626	206	62409											
GABRA4	2557	broad.mit.edu	37	chr4	46976423	46976423	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcacagaatgtggttagagtCaatgctcctttttcatccac	8	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46976423	G	G	46976423	1	3	56	0	1	0	0	0	0	0	0	0	6223	841	29	4		4	GABRA4	4	46976423	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	668773	46976423	144177853	207	62410											
GABRB1	2560	broad.mit.edu	37	chr4	47221639	47221639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttctttggtaatagtcCttttaaaaatgtcaacattc	5	7	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47221639	A	A	47221639	1	1	56	0	1	0	0	0	0	0	0	0	6226	696	24	2		2	GABRB1	4	47221639	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	245216	47221639	143932637	208	62411											
DCUN1D4	23142	broad.mit.edu	37	chr4	52729953	52729953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatactagctatgaatgcGctatgttgtcataatgtact	8	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52729953	T	T	52729953	1	4	56	0	1	0	0	0	0	0	0	0	4349	1102	38	3		3	DCUN1D4	4	52729953	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5508314	52729953	138424323	209	62412											
SPATA18	132671	broad.mit.edu	37	chr4	52938246	52938246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggacacagaagccatgtccGattataagaaacagctccga	9	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52938246	T	T	52938246	3	4	56	1	0	0	0	0	1	0	0	0	15119	1058	37	3	704	3	SPATA18	4	52938246	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	208293	52938246	138216030	210	62413											
SPATA18	132671	broad.mit.edu	37	chr4	52955248	52955248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgtgaagaggtgtttatAgtattctctgatggtagttt	11	2	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52955248	T	T	52955248	1	4	56	0	1	0	0	0	0	0	0	0	15119	435	15	5		5	SPATA18	4	52955248	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	17002	52955248	138199028	211	62414											
KIAA1211	57482	broad.mit.edu	37	chr4	57190412	57190412	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagctgaaaaaggccaataCtcttcctacgtctgtgacag	8	11	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57190412	T	T	57190412	3	4	56	1	0	0	0	0	1	0	0	0	8285	565	20	4	3547	4	KIAA1211	4	57190412	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4235164	57190412	133963864	212	62415											
LPHN3	23284	broad.mit.edu	37	chr4	62405331	62405331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgggtacgcaaacagCgtggtgtgcatcgtctcagt	13	10	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62405331	A	A	62405331	1	1	56	0	1	0	0	0	0	0	0	0	9004	783	27	3		3	LPHN3	4	62405331	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5214919	62405331	128748945	213	62416											
LPHN3	23284	broad.mit.edu	37	chr4	62599230	62599230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggaataactatcacgtcGtgaaatattctttggatttt	7	5	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62599230	T	T	62599230	3	4	56	1	0	0	0	0	1	0	0	0	9004	1145	40	3	1171	3	LPHN3	4	62599230	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	193899	62599230	128555046	214	62417											
SULT1E1	6783	broad.mit.edu	37	chr4	70707860	70707860	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagctcaataaatattaagtCttccaaaaagaatcattagg	5	6	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70707860	A	A	70707860	1	1	56	0	1	0	0	0	0	0	0	0	15498	928	32	3		3	SULT1E1	4	70707860	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8108630	70707860	120446416	215	62418											
ABCG2	9429	broad.mit.edu	37	chr4	89052493	89052493	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagttctagctaatgatgaAcctgcagttctgcaaatgac	8	8	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89052493	T	T	89052493	1	4	56	0	1	0	0	0	0	0	0	0	69	58	2	5		5	ABCG2	4	89052493	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	18344633	89052493	102101783	216	62419											
GRID2	2895	broad.mit.edu	37	chr4	93346793	93346793	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtagcttattctgtctaGgcaactgcctactttcccac	7	12	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93346793	C	C	93346793	1	2	56	0	1	0	0	0	0	0	0	0	6838	1015	35	4		4	GRID2	4	93346793	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4294300	93346793	97807483	217	62420											
GRID2	2895	broad.mit.edu	37	chr4	94145720	94145720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttccttattcctgatgActggtgtcaatgattctaat	6	7	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94145720	T	T	94145720	1	4	56	0	1	0	0	0	0	0	0	0	6838	290	10	5		5	GRID2	4	94145720	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	798927	94145720	97008556	218	62421											
GRID2	2895	broad.mit.edu	37	chr4	94500270	94500270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcattattggttatgaCatgtacatttttagaattgt	7	5	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94500270	A	A	94500270	1	1	56	0	1	0	0	0	0	0	0	0	6838	493	17	3		3	GRID2	4	94500270	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	354550	94500270	96654006	219	62422											
SMARCAD1	56916	broad.mit.edu	37	chr4	95210562	95210562	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagaaaaaaaataattgaGacaatttttttttaagtaaa	4	2	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95210562	T	T	95210562	1	4	56	0	1	0	0	0	0	0	0	0	14886	957	33	3		3	SMARCAD1	4	95210562	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	710292	95210562	95943714	220	62423											
PDLIM5	10611	broad.mit.edu	37	chr4	95387121	95387121	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttcttttttttttcccCtttgtttttgagacagggtc	7	8	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95387121	T	T	95387121	1	4	56	0	1	0	0	0	0	0	0	0	11777	696	24	4		4	PDLIM5	4	95387121	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	176559	95387121	95767155	221	62424											
CCDC109B	55013	broad.mit.edu	37	chr4	110560131	110560131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtctgcagttacttcttaCactgaagtcttgaccccctc	6	13	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110560131	A	A	110560131	1	1	56	0	1	0	0	0	0	0	0	0	2771	493	17	3		3	CCDC109B	4	110560131	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	15173010	110560131	80594145	222	62425											
ANK2	287	broad.mit.edu	37	chr4	114147538	114147538	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtaagtttccgtatgtcCtgtgttgtctcattgcacgg	10	8	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114147538	G	G	114147538	1	3	56	0	1	0	0	0	0	0	0	0	621	696	24	4		4	ANK2	4	114147538	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3587407	114147538	77006738	223	62426											
ANK2	287	broad.mit.edu	37	chr4	114244938	114244938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctctccatgtcttgaacGtgacaacagcaggtgaacta	9	12	2	3	rs145471236	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114244938	T	T	114244938	1	4	56	0	1	0	0	0	0	0	0	0	621	1145	40	3		3	ANK2	4	114244938	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	97400	114244938	76909338	224	62427											
ANXA5	308	broad.mit.edu	37	chr4	122604575	122604575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagagggtttcatcagagCcacaattaatttttcaaatt	7	8	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122604575	A	A	122604575	3	1	56	1	0	0	0	0	1	0	0	0	721	739	26	3	751	3	ANXA5	4	122604575	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8359637	122604575	68549701	225	62428											
INTU	27152	broad.mit.edu	37	chr4	128565196	128565196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatctgctatgaagagcGgtcaggtactcattggtaag	15	6	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128565196	T	T	128565196	3	4	56	1	0	0	0	0	1	0	0	0	7856	1116	39	1	673	1	INTU	4	128565196	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5960621	128565196	62589080	226	62429											
INPP4B	8821	broad.mit.edu	37	chr4	143039616	143039616	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagacatagaccaatggaacAgaacagggccttcagaaata	10	8	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143039616	T	T	143039616	1	4	56	0	1	0	0	0	0	0	0	0	7823	203	7	5		5	INPP4B	4	143039616	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	14474420	143039616	48114660	227	62430											
INPP4B	8821	broad.mit.edu	37	chr4	143130048	143130048	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagagaaattgcttccacaCctgtttccttgctaagttct	7	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143130048	A	A	143130048	5	1	56	1	0	0	0	0	0	0	1	0	7823	521	18	3	1862	3	INPP4B	4	143130048	Splice_Site	SNP	C	TCGA-17-Z025-01A-01W-0746-08	90432	143130048	48024228	228	62431											
INPP4B	8821	broad.mit.edu	37	chr4	143626087	143626087	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattagtgcccgcttaaccAtcactttgtcccttgactaa	6	12	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143626087	G	G	143626087	1	3	56	0	1	0	0	0	0	0	0	0	7823	232	8	5		5	INPP4B	4	143626087	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	496039	143626087	47528189	229	62432											
TTC29	83894	broad.mit.edu	37	chr4	147645347	147645347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcatagacataaagatGgcaaaaatagacactggggg	11	6	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147645347	T	T	147645347	1	4	56	0	1	0	0	0	0	0	0	0	16822	1363	47	2		2	TTC29	4	147645347	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4019260	147645347	43508929	230	62433											
FGB	2244	broad.mit.edu	37	chr4	155486973	155486973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtagggtttcttcagtgCccgtggtcatcgaccccttg	11	12	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155486973	A	A	155486973	3	1	56	1	0	0	0	0	1	0	0	0	5888	739	26	3	134	3	FGB	4	155486973	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7841626	155486973	35667303	231	62434											
MARCH1	55016	broad.mit.edu	37	chr4	164592634	164592634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaagagcacaatgcaaGtgttttactaattgcatttt	7	6	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164592634	T	T	164592634	1	4	56	0	1	0	0	0	0	0	0	0	9390	1044	36	3		3	MARCH1	4	164592634	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9105661	164592634	26561642	232	62435											
SPOCK3	50859	broad.mit.edu	37	chr4	168004244	168004244	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaataccaaagagccccCctcacacaatgaatgagtgg	7	12	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168004244	T	T	168004244	1	4	56	0	1	0	0	0	0	0	0	0	15199	638	22	4		4	SPOCK3	4	168004244	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3411610	168004244	23150032	233	62436											
AADAT	51166	broad.mit.edu	37	chr4	170991790	170991790	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctattatgaggaaatcaTattttcttgcaagctaaaaa	5	6	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170991790	C	C	170991790	3	2	56	1	0	0	0	0	1	0	0	0	14	1406	49	5	641	5	AADAT	4	170991790	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2987546	170991790	20162486	234	62437											
GALNTL6	442117	broad.mit.edu	37	chr4	173202496	173202496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatggctctacattactccCacctctgctttagttgtcac	5	13	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173202496	A	A	173202496	1	1	56	0	1	0	0	0	0	0	0	0	6287	609	21	2		2	GALNTL6	4	173202496	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2210706	173202496	17951780	235	62438											
GALNTL6	442117	broad.mit.edu	37	chr4	173301306	173301306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggatttggagcacttaaCaaggcctggatccgtagcag	12	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173301306	A	A	173301306	1	1	56	0	1	0	0	0	0	0	0	0	6287	493	17	3		3	GALNTL6	4	173301306	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	98810	173301306	17852970	236	62439											
GALNTL6	442117	broad.mit.edu	37	chr4	173503357	173503357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccgtgggggagcagataCcacagtggttaaggacatgg	16	7	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173503357	A	A	173503357	1	1	56	0	1	0	0	0	0	0	0	0	6287	522	18	3		3	GALNTL6	4	173503357	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	202051	173503357	17650919	237	62440											
SAP30	8819	broad.mit.edu	37	chr4	174292744	174292744	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggcggggtcccccagacaAccgcactggctgcagtgcgg	15	15	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174292744	T	T	174292744	1	4	56	0	1	0	0	0	0	0	0	0	13945	58	2	5		5	SAP30	4	174292744	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	789387	174292744	16861532	238	62441											
GLRA3	8001	broad.mit.edu	37	chr4	175660995	175660995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagatccacattttctgGgagcaggactgggccttaat	11	9	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175660995	T	T	175660995	1	4	56	0	1	0	0	0	0	0	0	0	6520	1247	43	2		2	GLRA3	4	175660995	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1368251	175660995	15493281	239	62442											
GPM6A	2823	broad.mit.edu	37	chr4	176625503	176625503	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacgtgcacgtgtgcaCgcccccccaccccacacaca	6	22	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176625503	T	T	176625503	1	4	56	0	1	0	0	0	0	0	0	0	6680	551	19	4		4	GPM6A	4	176625503	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	964508	176625503	14528773	240	62443											
ODZ3	55714	broad.mit.edu	37	chr4	183522271	183522271	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccgagtccgtccagctgCaggacagctgggtccttggc	13	15	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183522271	T	T	183522271	4	4	56	1	0	0	0	0	0	1	0	0	10931	711	25	4	716	4	ODZ3	4	183522271	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6896768	183522271	7632005	241	62444											
NSUN2	54888	broad.mit.edu	37	chr5	6609940	6609940	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaaagaaaaactcaccTttggctgacgtttattccac	7	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6609940	A	A	6609940	3	1	56	1	0	0	0	0	1	0	0	0	10773	1623	56	5	1013	5	NSUN2	5	6609940	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08		6609940	174305320	242	62445											
SEMA5A	9037	broad.mit.edu	37	chr5	9320601	9320601	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggccaaggtgggccaatCacttgagtcctggagttcta	14	9	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9320601	A	A	9320601	1	1	56	0	1	0	0	0	0	0	0	0	14150	841	29	3		3	SEMA5A	5	9320601	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2710661	9320601	171594659	243	62446											
DNAH5	1767	broad.mit.edu	37	chr5	13737634	13737634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcataaatatattttctacCtcaattaacaactcttgttg	3	8	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13737634	A	A	13737634	1	1	56	0	1	0	0	0	0	0	0	0	4644	696	24	2		2	DNAH5	5	13737634	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4417033	13737634	167177626	244	62447											
MARCH11	441061	broad.mit.edu	37	chr5	16077114	16077114	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctctggcctttatcctAaagggtacattgcagcgttt	8	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16077114	G	G	16077114	1	3	56	0	1	0	0	0	0	0	0	0	9392	377	13	5		5	MARCH11	5	16077114	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2339480	16077114	164838146	245	62448											
CDH12	1010	broad.mit.edu	37	chr5	21882883	21882883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagccaaagggaagaacaGtgattattgagcagagctgg	15	5	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21882883	T	T	21882883	1	4	56	0	1	0	0	0	0	0	0	0	3128	1044	36	3		3	CDH12	5	21882883	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5805769	21882883	159032377	246	62449											
CDH12	1010	broad.mit.edu	37	chr5	22687184	22687184	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaggctaaggcgcgtggatCacgacgtcagaagatcgaga	16	8	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22687184	T	T	22687184	1	4	56	0	1	0	0	0	0	0	0	0	3128	841	29	4		4	CDH12	5	22687184	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	804301	22687184	158228076	247	62450											
PRDM9	56979	broad.mit.edu	37	chr5	23524602	23524602	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgggcatcaagtggggCagcaagtggaagaaagagct	16	6	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23524602	A	A	23524602	2	1	56	1	0	0	0	0	0	0	0	1	12569	697	25	3		3	PRDM9	5	23524602	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	837418	23524602	157390658	248	62451											
CDH6	1004	broad.mit.edu	37	chr5	31299735	31299735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaccctccccgattccccCagagtaggaacatttgattg	7	14	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31299735	A	A	31299735	3	1	56	1	0	0	0	0	1	0	0	0	3144	595	21	2	822	2	CDH6	5	31299735	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7775133	31299735	149615525	249	62452											
ZFR	51663	broad.mit.edu	37	chr5	32403291	32403291	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactttagtgttagatgtgCtattaagagacgagtttcct	9	5	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32403291	T	T	32403291	3	4	56	1	0	0	0	0	1	0	0	0	17785	797	28	4	1840	4	ZFR	5	32403291	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1103556	32403291	148511969	250	62453											
ADAMTS12	81792	broad.mit.edu	37	chr5	33825522	33825522	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgagctggatatatcatgtCattagatgagagatttagtc	10	5	2	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33825522	G	G	33825522	1	3	56	0	1	0	0	0	0	0	0	0	257	841	29	4		4	ADAMTS12	5	33825522	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1422231	33825522	147089738	251	62454											
SLC45A2	51151	broad.mit.edu	37	chr5	33947341	33947341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggtgctggacattacaCcaaacaggctgcacaggacc	11	12	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33947341	A	A	33947341	3	1	56	1	0	0	0	0	1	0	0	0	14755	507	18	3	320	3	SLC45A2	5	33947341	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	121819	33947341	146967919	252	62455											
SPEF2	79925	broad.mit.edu	37	chr5	35739981	35739981	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctattattcagaagaactttCattttgaagtaacagtttct	5	6	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35739981	G	G	35739981	1	3	56	0	1	0	0	0	0	0	0	0	15153	841	29	4		4	SPEF2	5	35739981	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1792640	35739981	145175279	253	62456											
IL7R	3575	broad.mit.edu	37	chr5	35874708	35874708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggacagtcagagcttaagcCccatttattgatgagaaaac	9	9	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35874708	A	A	35874708	1	1	56	0	1	0	0	0	0	0	0	0	7775	638	22	2		2	IL7R	5	35874708	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	134727	35874708	145040552	254	62457											
UGT3A1	133688	broad.mit.edu	37	chr5	35998286	35998286	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcctcagctttagaaaAcccaaactacaaatttcctt	4	11	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35998286	T	T	35998286	1	4	56	0	1	0	0	0	0	0	0	0	17089	58	2	5		5	UGT3A1	5	35998286	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	123578	35998286	144916974	255	62458											
PLCXD3	345557	broad.mit.edu	37	chr5	41505008	41505008	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagttgaagaactgacAgttgctatgactctgatttt	12	5	1	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41505008	T	T	41505008	1	4	56	0	1	0	0	0	0	0	0	0	12138	203	7	5		5	PLCXD3	5	41505008	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	5506722	41505008	139410252	256	62459											
C5orf51	285636	broad.mit.edu	37	chr5	41904407	41904407	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaggccccgcccgtgccgGgggatcaggtgattgcgggc	17	14	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41904407	A	A	41904407	1	1	56	0	1	0	0	0	0	0	0	0	2331	1247	43	4		4	C5orf51	5	41904407	5'Flank	SNP	G	TCGA-17-Z025-01A-01W-0746-08	399399	41904407	139010853	257	62460											
HCN1	348980	broad.mit.edu	37	chr5	45267328	45267328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcgaacactggcagtaCgacgtcctttggtcagcagg	12	12	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45267328	A	A	45267328	3	1	56	1	0	0	0	0	1	0	0	0	7062	536	19	3	1034	3	HCN1	5	45267328	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3362921	45267328	135647932	258	62461											
ARL15	54622	broad.mit.edu	37	chr5	53526521	53526521	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttccctgtaatcctgtcCtctccctctgtgcgccctca	6	18	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53526521	A	A	53526521	1	1	56	0	1	0	0	0	0	0	0	0	933	696	24	2		2	ARL15	5	53526521	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8259193	53526521	127388739	259	62462											
FLJ37543	285668	broad.mit.edu	37	chr5	60956423	60956423	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagagagagagagagagagaGagagagagacagagagagac	19	2	0	9	rs59585386		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60956423	C	C	60956423	1	2	56	0	1	0	0	0	0	0	0	0	5986	957	33	4		4	FLJ37543	5	60956423	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	7429902	60956423	119958837	260	62463											
RGNEF	64283	broad.mit.edu	37	chr5	72940561	72940561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctagcttctgttgctaGtcattagaaccacctggaga	10	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72940561	T	T	72940561	1	4	56	0	1	0	0	0	0	0	0	0	13391	1044	36	3		3	RGNEF	5	72940561	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	11984138	72940561	107974699	261	62464											
SV2C	22987	broad.mit.edu	37	chr5	75427579	75427579	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccatcagttgagataagatgGaagactcttacaaggatagg	11	6	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75427579	C	C	75427579	3	2	56	1	0	0	0	0	1	0	0	0	15537	1175	41	4	6	4	SV2C	5	75427579	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2487018	75427579	105487681	262	62465											
DMGDH	29958	broad.mit.edu	37	chr5	78359376	78359376	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggagttgtgaacgggaagGaaatggactttactcatgca	14	5	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78359376	A	A	78359376	1	1	56	0	1	0	0	0	0	0	0	0	4621	1189	41	4		4	DMGDH	5	78359376	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2931797	78359376	102555884	263	62466											
EDIL3	10085	broad.mit.edu	37	chr5	83445170	83445170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacttggagcccacactaGgccaagagaactgccaattc	8	12	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83445170	T	T	83445170	1	4	56	0	1	0	0	0	0	0	0	0	4955	1015	35	2		2	EDIL3	5	83445170	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5085794	83445170	97470090	264	62467											
LIX1	167410	broad.mit.edu	37	chr5	96444446	96444446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgcttcttagaaacctGgaccacctgaactttgggag	10	10	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96444446	T	T	96444446	1	4	56	0	1	0	0	0	0	0	0	0	8905	1363	47	2		2	LIX1	5	96444446	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	12999276	96444446	84470814	265	62468											
MAN2A1	4124	broad.mit.edu	37	chr5	109049199	109049199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattagtatttcatatagctGcctttttcttttttattgta	4	5	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109049199	A	A	109049199	1	1	56	0	1	0	0	0	0	0	0	0	9306	1334	46	4		4	MAN2A1	5	109049199	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	12604753	109049199	71866061	266	62469											
DMXL1	1657	broad.mit.edu	37	chr5	118506471	118506471	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacagagaaaaacagataaAaagttggatgacataagttc	8	4	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118506471	T	T	118506471	3	4	56	1	0	0	0	0	1	0	0	0	4634	11	1	5	6079	5	DMXL1	5	118506471	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	9457272	118506471	62408789	267	62470											
H2AFY	9555	broad.mit.edu	37	chr5	134705049	134705049	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtaaccctgtttatcCgtaccccatcctatcccact	4	18	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134705049	T	T	134705049	1	4	56	0	1	0	0	0	0	0	0	0	6994	667	23	4		4	H2AFY	5	134705049	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	16198578	134705049	46210211	268	62471											
LOC153328	153328	broad.mit.edu	37	chr5	135178229	135178229	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactattcctgctgtttctAatctctcagagagtcttctg	8	10	5	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135178229	G	G	135178229	1	3	56	0	1	0	0	0	0	0	0	0	8949	377	13	5		5	LOC153328	5	135178229	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	473180	135178229	45737031	269	62472											
PCDHA7	56141	broad.mit.edu	37	chr5	140215571	140215571	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagctgttgcagttccagGtgagcgcgcgcgatgcgggc	18	10	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215571	A	A	140215571	3	1	56	1	0	0	0	0	1	0	0	0	11623	1261	44	4	1605	4	PCDHA7	5	140215571	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5037342	140215571	40699689	270	62473											
PCDHA10	56139	broad.mit.edu	37	chr5	140237858	140237858	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgctggtgtgctctagcgCggtggggagctggtcttact	16	10	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140237858	T	T	140237858	3	4	56	1	0	0	0	0	1	0	0	0	11614	768	27	4	2227	4	PCDHA10	5	140237858	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	22287	140237858	40677402	271	62474											
PCDHB8	56128	broad.mit.edu	37	chr5	140558412	140558412	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcctggttgtgaaggtctCtgccacggatgtagacacag	12	10	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140558412	A	A	140558412	3	1	56	1	0	0	0	0	1	0	0	0	11642	913	32	3	799	3	PCDHB8	5	140558412	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	320554	140558412	40356848	272	62475											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773370	140773370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgggggcacttctggggagGaccaaattgctcatttcggt	15	8	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140773370	T	T	140773370	3	4	56	1	0	0	0	0	1	0	0	0	11654	1165	41	3	992	3	PCDHGA8	5	140773370	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	214958	140773370	40141890	273	62476											
PCDH1	5097	broad.mit.edu	37	chr5	141248394	141248394	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctgcagcccaaatagctCctgggcctcaggcccagcct	9	18	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141248394	A	A	141248394	4	1	56	1	0	0	0	0	0	1	0	0	11600	864	30	3	3170	3	PCDH1	5	141248394	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	475024	141248394	39666866	274	62477											
ARHGAP26	23092	broad.mit.edu	37	chr5	142170498	142170498	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacttctcaccctctaaactCcccgctgcatgttgaataaa	4	14	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142170498	T	T	142170498	1	4	56	0	1	0	0	0	0	0	0	0	877	870	30	4		4	ARHGAP26	5	142170498	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	922104	142170498	38744762	275	62478											
LARS	51520	broad.mit.edu	37	chr5	145547791	145547791	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatcaggggggcaaccaTacagctctatttctcttttc	8	10	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145547791	C	C	145547791	3	2	56	1	0	0	0	0	1	0	0	0	8706	1406	49	5	3310	5	LARS	5	145547791	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	3377293	145547791	35367469	276	62479											
STK32A	202374	broad.mit.edu	37	chr5	146747218	146747218	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagccaggagaaggaatttcAcaaggtagtgtcatcagtta	12	6	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146747218	T	T	146747218	1	4	56	0	1	0	0	0	0	0	0	0	15415	174	6	5		5	STK32A	5	146747218	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1199427	146747218	34168042	277	62480											
SH3TC2	79628	broad.mit.edu	37	chr5	148392039	148392039	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accctttctccacaggcttaGggtgaacatcatccctctct	6	15	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148392039	A	A	148392039	1	1	56	0	1	0	0	0	0	0	0	0	14375	1015	35	4		4	SH3TC2	5	148392039	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1644821	148392039	32523221	278	62481											
NDST1	3340	broad.mit.edu	37	chr5	149922711	149922711	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacagcgttgtcatagacaGgacactcgatgaggaggccc	13	10	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149922711	C	C	149922711	1	2	56	0	1	0	0	0	0	0	0	0	10350	1015	35	4		4	NDST1	5	149922711	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1530672	149922711	30992549	279	62482											
FAT2	2196	broad.mit.edu	37	chr5	150891687	150891687	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacctgaagagccttctgGgataaaccctgggttcagcc	10	14	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150891687	C	C	150891687	1	2	56	0	1	0	0	0	0	0	0	0	5747	1247	43	4		4	FAT2	5	150891687	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	968976	150891687	30023573	280	62483											
SPARC	6678	broad.mit.edu	37	chr5	151051275	151051275	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtagggcagaaagacaaGggagttagcatcacctggac	13	8	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151051275	A	A	151051275	1	1	56	0	1	0	0	0	0	0	0	0	15111	1015	35	4		4	SPARC	5	151051275	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	159588	151051275	29863985	281	62484											
HAND1	9421	broad.mit.edu	37	chr5	153857468	153857468	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcctttcctgatgacagCgcgaggccggaccgaagagg	16	11	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153857468	T	T	153857468	3	4	56	1	0	0	0	0	1	0	0	0	7015	768	27	4	554	4	HAND1	5	153857468	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2806193	153857468	27057792	282	62485											
SGCD	6444	broad.mit.edu	37	chr5	155752859	155752859	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacacacacctccccacacCgcctcccaccccactgcttc	3	25	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155752859	A	A	155752859	1	1	56	0	1	0	0	0	0	0	0	0	14314	667	23	1		1	SGCD	5	155752859	5'Flank	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1895391	155752859	25162401	283	62486											
ADAM19	8728	broad.mit.edu	37	chr5	156918832	156918832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacacagagaagccagaacCcagcacgcaccccatggcca	9	16	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156918832	A	A	156918832	1	1	56	0	1	0	0	0	0	0	0	0	240	638	22	2		2	ADAM19	5	156918832	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1165973	156918832	23996428	284	62487											
GABRG2	2566	broad.mit.edu	37	chr5	161580089	161580089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccctctccttccctaccCtcgtcccaggcccctaccat	4	22	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161580089	A	A	161580089	1	1	56	0	1	0	0	0	0	0	0	0	6232	696	24	2		2	GABRG2	5	161580089	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4661257	161580089	19335171	285	62488											
C5orf58	133874	broad.mit.edu	37	chr5	169674877	169674877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggagaaggttggtggggGgctgtgatggttggtgtggg	24	1	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169674877	T	T	169674877	1	4	56	0	1	0	0	0	0	0	0	0	2336	1247	43	2		2	C5orf58	5	169674877	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	8094788	169674877	11240383	286	62489											
ATP6V0E1	8992	broad.mit.edu	37	chr5	172410781	172410781	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcggggcttgcacacgCtggtcacgcggtcagctatt	16	11	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172410781	G	G	172410781	1	3	56	0	1	0	0	0	0	0	0	0	1179	812	28	4		4	ATP6V0E1	5	172410781	5'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2735904	172410781	8504479	287	62490											
HMP19	51617	broad.mit.edu	37	chr5	173495991	173495991	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggagggtgctggtgtcttGgtgatcctggtgctatggag	18	5	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173495991	C	C	173495991	1	2	56	0	1	0	0	0	0	0	0	0	7312	1363	47	4		4	HMP19	5	173495991	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1085210	173495991	7419269	288	62491											
HMP19	51617	broad.mit.edu	37	chr5	173525214	173525214	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccagagaagcaactgcagGagctgtcagggtgctggggc	17	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173525214	T	T	173525214	1	4	56	0	1	0	0	0	0	0	0	0	7312	1189	41	3		3	HMP19	5	173525214	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	29223	173525214	7390046	289	62492											
ZNF354A	6940	broad.mit.edu	37	chr5	178153959	178153960	+	Intron	INS	-	A	A													aaggaggtgctgagatatccINScaatttttgaattctgtttc							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178153960	A	A	178153959	6	5	56	0	1	1	1	0	0	0	0	0	17990	638	22	0		0	ZNF354A	5	178153959	Intron	INS	-	TCGA-17-Z025-01A-01W-0746-08	4628745	178153959	2761301	290	62493											
DUSP22	56940	broad.mit.edu	37	chr6	348140	348140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgtgacactggtgatcGcatacatcatgaccgtcact	11	11	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348140	T	T	348140	3	4	56	1	0	0	0	0	1	0	0	0	4861	1087	38	3	323	3	DUSP22	6	348140	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08		348140	170766927	291	62494											
SERPINB9	5272	broad.mit.edu	37	chr6	2900992	2900992	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattttaaattggagaaaaaTttattttctgttagtctccg	6	4	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2900992	A	A	2900992	1	1	56	0	1	0	0	0	0	0	0	0	14221	1508	52	5		5	SERPINB9	6	2900992	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2552852	2900992	168214075	292	62495											
DSP	1832	broad.mit.edu	37	chr6	7578716	7578716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcagatgttcatgctcGgtacattgaactacttacaa	9	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578716	T	T	7578716	3	4	56	1	0	0	0	0	1	0	0	0	4821	1116	39	1	3091	1	DSP	6	7578716	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4677724	7578716	163536351	293	62496											
BMP6	654	broad.mit.edu	37	chr6	7855022	7855022	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacagagcaagactctctctCaaaaataaataaacagacaa	5	9	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7855022	T	T	7855022	1	4	56	0	1	0	0	0	0	0	0	0	1470	841	29	4		4	BMP6	6	7855022	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	276306	7855022	163260045	294	62497											
SLC35B3	51000	broad.mit.edu	37	chr6	8422641	8422641	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtttaatgtttttcctaaTgctagatgccataacatagc	6	7	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8422641	C	C	8422641	1	2	56	0	1	0	0	0	0	0	0	0	14691	1479	51	5		5	SLC35B3	6	8422641	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	567619	8422641	162692426	295	62498											
GFOD1	54438	broad.mit.edu	37	chr6	13364943	13364943	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggacatcccctgcagAaggctcaagtccccgaggtt	11	13	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13364943	T	T	13364943	1	4	56	0	1	0	0	0	0	0	0	0	6407	261	9	5		5	GFOD1	6	13364943	3'UTR	SNP	A	TCGA-17-Z025-01A-01W-0746-08	4942302	13364943	157750124	296	62499											
NRSN1	140767	broad.mit.edu	37	chr6	24145856	24145856	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcttgtgccccccaaaatCgaagcatttggcgaagccga	9	12	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24145856	T	T	24145856	2	4	56	1	0	0	0	0	0	0	0	1	10757	874	31	4		4	NRSN1	6	24145856	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	10780913	24145856	146969211	297	62500											
SLC17A4	10050	broad.mit.edu	37	chr6	25779052	25779052	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggactgaaagggagtgaaGatgtgagacaaataggtatc	14	3	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25779052	T	T	25779052	1	4	56	0	1	0	0	0	0	0	0	0	14532	957	33	3		3	SLC17A4	6	25779052	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1633196	25779052	145336015	298	62501											
PRSS16	10279	broad.mit.edu	37	chr6	27220923	27220923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctcacatgcctcctcacGcacacactgaggtctccact	6	19	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27220923	T	T	27220923	1	4	56	0	1	0	0	0	0	0	0	0	12722	1102	38	3		3	PRSS16	6	27220923	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1441871	27220923	143894144	299	62502											
ZNF165	7718	broad.mit.edu	37	chr6	28056534	28056534	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtctcagagactctcGtctgcccaggatgaaggttt	14	9	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28056534	C	C	28056534	2	2	56	1	0	0	0	0	0	0	0	1	17866	1132	40	4		4	ZNF165	6	28056534	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	835611	28056534	143058533	300	62503											
HLA-G	3135	broad.mit.edu	37	chr6	29962834	29962834	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagctgcaggggtgagggTggtgcagggtgggatttaga	22	3	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29962834	C	C	29962834	1	2	56	0	1	0	0	0	0	0	0	0	7279	1711	59	5		5	HLA-G	6	29962834	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1906300	29962834	141152233	301	62504											
TAPBP	6892	broad.mit.edu	37	chr6	33281883	33281883	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactttcactttcctccaaaGggcggcatgaggggcggtgg	14	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33281883	C	C	33281883	1	2	56	0	1	0	0	0	0	0	0	0	15671	1015	35	4		4	TAPBP	6	33281883	5'UTR	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3319049	33281883	137833184	302	62505											
C6orf81	221481	broad.mit.edu	37	chr6	35705733	35705733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccccaagtccctgtccCctacttcccaaccccattct	3	20	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35705733	A	A	35705733	1	1	56	0	1	0	0	0	0	0	0	0	2396	638	22	2		2	C6orf81	6	35705733	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2423850	35705733	135409334	303	62506											
FOXP4	116113	broad.mit.edu	37	chr6	41557832	41557832	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctacggccccctggcctGggctctgcctccctgcatgg	11	19	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41557832	T	T	41557832	2	4	56	1	0	0	0	0	0	0	0	1	6089	1335	47	2		2	FOXP4	6	41557832	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5852099	41557832	129557235	304	62507											
RPL7L1	285855	broad.mit.edu	37	chr6	42847687	42847687	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actagaaagatggcggagcaAgagtgagtgtttggggcttt	16	4	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42847687	T	T	42847687	3	4	56	1	0	0	0	0	1	0	0	0	13712	69	3	5	14	5	RPL7L1	6	42847687	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1289855	42847687	128267380	305	62508											
CAPN11	11131	broad.mit.edu	37	chr6	44147422	44147422	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacatacccactccaccccTggctgcaagtggattggcaa	8	15	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44147422	A	A	44147422	1	1	56	0	1	0	0	0	0	0	0	0	2650	1595	55	5		5	CAPN11	6	44147422	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1299735	44147422	126967645	306	62509											
RHAG	6005	broad.mit.edu	37	chr6	49578832	49578832	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaccccacatgtatcatgGatcctcagtttagtagtaaa	8	9	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49578832	T	T	49578832	2	4	56	1	0	0	0	0	0	0	0	1	13424	1164	41	3		3	RHAG	6	49578832	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5431410	49578832	121536235	307	62510											
PGK2	5232	broad.mit.edu	37	chr6	49754451	49754451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcttggaaagtgatgctcgGaaggcttctattttatctgg	12	6	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49754451	T	T	49754451	3	4	56	1	0	0	0	0	1	0	0	0	11886	1165	41	3	807	3	PGK2	6	49754451	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	175619	49754451	121360616	308	62511											
DEFB110	245913	broad.mit.edu	37	chr6	49986847	49986847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctttttggctgtaagaAgggaagaatgactaaaatta	9	3	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49986847	T	T	49986847	1	4	56	0	1	0	0	0	0	0	0	0	4439	87	3	5		5	DEFB110	6	49986847	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	232396	49986847	121128220	309	62512											
TFAP2D	83741	broad.mit.edu	37	chr6	50696895	50696895	+	Intron	DEL	G	-	-													tcaaaacctagtttttgtttGtttttgtacagagcaaaatc							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50696895	-	-	50696895	6	5	56	0	1	1	0	1	0	0	0	0	15913	1392	48	0		0	TFAP2D	6	50696895	Intron	DEL	G	TCGA-17-Z025-01A-01W-0746-08	710048	50696895	120418172	310	62513											
PKHD1	5314	broad.mit.edu	37	chr6	51827274	51827274	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttatgccatttgctgcCttccatgtgctataacctct	6	12	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51827274	T	T	51827274	1	4	56	0	1	0	0	0	0	0	0	0	12066	696	24	4		4	PKHD1	6	51827274	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1130379	51827274	119287793	311	62514											
FAM83B	222584	broad.mit.edu	37	chr6	54743435	54743435	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgacagcaaagaggagatgAgtagaagatgcatcagagag	14	6	1	6			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54743435	T	T	54743435	1	4	56	0	1	0	0	0	0	0	0	0	5687	319	11	5		5	FAM83B	6	54743435	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2916161	54743435	116371632	312	62515											
HMGCLL1	54511	broad.mit.edu	37	chr6	55360313	55360313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctttcatcacactttcCaacattcttttcatacttcc	0	13	5	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55360313	A	A	55360313	3	1	56	1	0	0	0	0	1	0	0	0	7297	593	21	2	335	2	HMGCLL1	6	55360313	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	616878	55360313	115754754	313	62516											
COL21A1	81578	broad.mit.edu	37	chr6	56141452	56141452	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatttctggaaaacacgtgtCactttcaaaagtcctgcatg	7	9	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56141452	A	A	56141452	1	1	56	0	1	0	0	0	0	0	0	0	3712	841	29	3		3	COL21A1	6	56141452	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	781139	56141452	114973615	314	62517											
EYS	346007	broad.mit.edu	37	chr6	66019833	66019834	+	Intron	DNP	CC	AA	AA													tttgtcttcctccccttgatCcctgttcaatttttcttggt							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	66019834	AA	AA	66019833	1	1	56	0	1	0	0	0	0	0	0	0	5375	870	30	3		3	EYS	6	66019833	Intron	DNP	CC	TCGA-17-Z025-01A-01W-0746-08	9878381	66019833	105095234	315	62518											
EYS	346007	broad.mit.edu	37	chr6	66100703	66100703	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaggattgcttgagcccaGgaggttgagactgacatgag	16	6	0	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66100703	C	C	66100703	1	2	56	0	1	0	0	0	0	0	0	0	5375	1015	35	4		4	EYS	6	66100703	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	80870	66100703	105014364	316	62519											
BAI3	577	broad.mit.edu	37	chr6	69492670	69492670	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcataaatgtcttcttttgaGaagtgtctgttcatatcctt	7	7	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69492670	T	T	69492670	1	4	56	0	1	0	0	0	0	0	0	0	1305	957	33	3		3	BAI3	6	69492670	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3391967	69492670	101622397	317	62520											
IMPG1	3617	broad.mit.edu	37	chr6	76771176	76771176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgaagccacaatgaagCaaaataccttttgtgtaatt	6	6	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76771176	T	T	76771176	1	4	56	0	1	0	0	0	0	0	0	0	7798	725	25	4		4	IMPG1	6	76771176	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7278506	76771176	94343891	318	62521											
IBTK	25998	broad.mit.edu	37	chr6	82911190	82911190	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaccatcgcttaaaacAtcaagagacctaaaatatag	4	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82911190	T	T	82911190	3	4	56	1	0	0	0	0	1	0	0	0	7546	214	8	5	1366	5	IBTK	6	82911190	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	6140014	82911190	88203877	319	62522											
SNAP91	9892	broad.mit.edu	37	chr6	84336993	84336993	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattttgttgaggatttctgCatctatgtttgtcagggata	10	4	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84336993	T	T	84336993	1	4	56	0	1	0	0	0	0	0	0	0	14947	725	25	4		4	SNAP91	6	84336993	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1425803	84336993	86778074	320	62523											
C6orf165	154313	broad.mit.edu	37	chr6	88119528	88119528	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcataaaaccacggttttttTaaaaaaaattgttgttttat	5	4	0	0	rs138786386	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88119528	A	A	88119528	1	1	56	0	1	0	0	0	0	0	0	0	2364	1769	61	5		5	C6orf165	6	88119528	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	3782535	88119528	82995539	321	62524											
AIM1	202	broad.mit.edu	37	chr6	106967309	106967309	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacagtccccagaatggtgtGctggttaaggaaactgctat	11	8	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106967309	C	C	106967309	2	2	56	1	0	0	0	0	0	0	0	1	430	1306	46	4		4	AIM1	6	106967309	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	18847781	106967309	64147758	322	62525											
FYN	2534	broad.mit.edu	37	chr6	112079997	112079997	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatttaggacggcaggaCaggaatgaaaattctgggca	13	7	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112079997	A	A	112079997	1	1	56	0	1	0	0	0	0	0	0	0	6186	493	17	3		3	FYN	6	112079997	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5112688	112079997	59035070	323	62526											
C6orf170	221322	broad.mit.edu	37	chr6	121401863	121401863	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaaaacatcaagccccCctgctgtgtttaaaaataaa	5	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121401863	A	A	121401863	1	1	56	0	1	0	0	0	0	0	0	0	2367	638	22	2		2	C6orf170	6	121401863	3'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	9321866	121401863	49713204	324	62527											
MTHFD1L	25902	broad.mit.edu	37	chr6	151288043	151288043	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgcaggtgtcccctgagCtgaggaagggaggactgaac	16	9	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151288043	G	G	151288043	1	3	56	0	1	0	0	0	0	0	0	0	10022	812	28	4		4	MTHFD1L	6	151288043	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	29886180	151288043	19827024	325	62528											
SYNE1	23345	broad.mit.edu	37	chr6	152712447	152712447	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtttctccagggtgtcttTgctcccaagagtgctctctg	10	13	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152712447	G	G	152712447	3	3	56	1	0	0	0	0	1	0	0	0	15564	1821	63	5	18877	5	SYNE1	6	152712447	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1424404	152712447	18402620	326	62529											
SERAC1	84947	broad.mit.edu	37	chr6	158571665	158571665	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcataaatagacaatcaaaAtgtaacacaagagctactct	4	8	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158571665	T	T	158571665	1	4	56	0	1	0	0	0	0	0	0	0	14187	116	4	5		5	SERAC1	6	158571665	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	5859218	158571665	12543402	327	62530											
PARK2	5071	broad.mit.edu	37	chr6	161768849	161768849	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatagagacggggtttcatCatcttggccaggctggtctt	12	8	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161768849	A	A	161768849	1	1	56	0	1	0	0	0	0	0	0	0	11543	841	29	3		3	PARK2	6	161768849	3'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3197184	161768849	9346218	328	62531											
PARK2	5071	broad.mit.edu	37	chr6	162450228	162450228	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacccacccacctccaccccCacacatgatacagagaaatt	3	18	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162450228	G	G	162450228	1	3	56	0	1	0	0	0	0	0	0	0	11543	609	21	4		4	PARK2	6	162450228	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	681379	162450228	8664839	329	62532											
UNC93A	54346	broad.mit.edu	37	chr6	167711434	167711434	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccactctgacttcatagaGacccttccagaagagcagct	8	13	2	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167711434	A	A	167711434	2	1	56	1	0	0	0	0	0	0	0	1	17122	956	33	4		4	UNC93A	6	167711434	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5261206	167711434	3403633	330	62533											
SDK1	221935	broad.mit.edu	37	chr7	4285260	4285260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaggagtcctccggggaaGggcgtcttttgcccagaggg	17	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4285260	T	T	4285260	1	4	56	0	1	0	0	0	0	0	0	0	14081	1015	35	2		2	SDK1	7	4285260	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08		4285260	154853403	331	62534											
ISPD	729920	broad.mit.edu	37	chr7	16233802	16233802	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtcccggaggaaacctaaTctaggccttttagtccatat	8	10	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16233802	C	C	16233802	1	2	56	0	1	0	0	0	0	0	0	0	7934	1450	50	5		5	ISPD	7	16233802	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	11948542	16233802	142904861	332	62535											
NFE2L3	9603	broad.mit.edu	37	chr7	26224038	26224038	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttactgccaacagcatctAtctctattaaatgtagagga	7	8	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26224038	G	G	26224038	1	3	56	0	1	0	0	0	0	0	0	0	10464	464	16	5		5	NFE2L3	7	26224038	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	9990236	26224038	132914625	333	62536											
CRHR2	1395	broad.mit.edu	37	chr7	30693187	30693187	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgatggtcctgccagcgGtgccacctcttcctcacggc	12	15	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30693187	A	A	30693187	2	1	56	1	0	0	0	0	0	0	0	1	3904	1252	44	4		4	CRHR2	7	30693187	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4469149	30693187	128445476	334	62537											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31120331	31120331	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggagatcccaggctccgGctgctgggattggggtgggg	19	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31120331	C	C	31120331	1	2	56	0	1	0	0	0	0	0	0	0	303	1218	42	4		4	ADCYAP1R1	7	31120331	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	427144	31120331	128018332	335	62538											
TXNDC3	51314	broad.mit.edu	37	chr7	37924896	37924896	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actatctgttttcgtgggctCcattttaaacacctttttag	6	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37924896	A	A	37924896	1	1	56	0	1	0	0	0	0	0	0	0	16924	870	30	3		3	TXNDC3	7	37924896	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6804565	37924896	121213767	336	62539											
C7orf36	57002	broad.mit.edu	37	chr7	39610245	39610245	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaatttttaaagtctaaAtgctgaatcattttaacctc	5	6	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39610245	G	G	39610245	1	3	56	0	1	0	0	0	0	0	0	0	2415	116	4	5		5	C7orf36	7	39610245	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1685349	39610245	119528418	337	62540											
GCK	2645	broad.mit.edu	37	chr7	44222280	44222280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggacactagaatggatgGtggggatggggcatgatggt	20	3	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44222280	T	T	44222280	1	4	56	0	1	0	0	0	0	0	0	0	6355	1276	44	3		3	GCK	7	44222280	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4612035	44222280	114916383	338	62541											
TNS3	64759	broad.mit.edu	37	chr7	47384613	47384613	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatcgataatatcgaggtcCtggggatagccaggggtcat	13	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47384613	G	G	47384613	3	3	56	1	0	0	0	0	1	0	0	0	16467	680	24	4	1914	4	TNS3	7	47384613	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3162333	47384613	111754050	339	62542											
ABCA13	154664	broad.mit.edu	37	chr7	48467326	48467326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcgatgtgtatagaaaCataaaataatacatggcgtt	8	4	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48467326	A	A	48467326	1	1	56	0	1	0	0	0	0	0	0	0	31	493	17	3		3	ABCA13	7	48467326	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1082713	48467326	110671337	340	62543											
ABCA13	154664	broad.mit.edu	37	chr7	48568389	48568389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtcatgactccttcagGgtgggagcagtgaacacatt	14	8	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48568389	T	T	48568389	1	4	56	0	1	0	0	0	0	0	0	0	31	1247	43	2		2	ABCA13	7	48568389	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	101063	48568389	110570274	341	62544											
ABCA13	154664	broad.mit.edu	37	chr7	48659517	48659517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacacccctccataacaGgcaagagtttttcatgcgtt	8	11	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48659517	T	T	48659517	1	4	56	0	1	0	0	0	0	0	0	0	31	1015	35	2		2	ABCA13	7	48659517	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	91128	48659517	110479146	342	62545											
ZNF713	349075	broad.mit.edu	37	chr7	56006849	56006849	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaccaagaaaaccacaAgagatatttaggacaagtaa	7	6	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56006849	G	G	56006849	3	3	56	1	0	0	0	0	1	0	0	0	18245	72	3	5	457	5	ZNF713	7	56006849	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	7347332	56006849	103131814	343	62546											
CCT6A	908	broad.mit.edu	37	chr7	56125832	56125832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaacagtgaaatggagaaGcttcgtattttaggcgagtt	11	5	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56125832	T	T	56125832	1	4	56	0	1	0	0	0	0	0	0	0	2987	986	34	3		3	CCT6A	7	56125832	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	118983	56125832	103012831	344	62547											
RFC2	5982	broad.mit.edu	37	chr7	73176927	73176927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccttccccttgctgaGccccaccccttttccagtcc	7	20	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73176927	T	T	73176927	1	4	56	0	1	0	0	0	0	0	0	0	13353	986	34	3		3	RFC2	7	73176927	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	17051095	73176927	85961736	345	62548											
PHTF2	57157	broad.mit.edu	37	chr7	77569753	77569753	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcttttatagtacctaAccaaataaaatcttaacaat	2	7	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77569753	T	T	77569753	1	4	56	0	1	0	0	0	0	0	0	0	11958	58	2	5		5	PHTF2	7	77569753	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	4392826	77569753	81568910	346	62549											
PCLO	27445	broad.mit.edu	37	chr7	82764767	82764767	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagtggtggtggctttttaGgctcaggtgccttggagaga	16	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82764767	A	A	82764767	3	1	56	1	0	0	0	0	1	0	0	0	11677	1000	35	4	13438	4	PCLO	7	82764767	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5195014	82764767	76373896	347	62550											
SEMA3E	9723	broad.mit.edu	37	chr7	82997074	82997074	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactctctggaagttgctaTaaccgatcagctgcaagaat	8	11	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82997074	C	C	82997074	3	2	56	1	0	0	0	0	1	0	0	0	14141	1406	49	5	175	5	SEMA3E	7	82997074	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	232307	82997074	76141589	348	62551											
SEMA3D	223117	broad.mit.edu	37	chr7	84751073	84751073	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacctttgtaggttagcttGagtcttggaatattttgctt	9	5	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84751073	T	T	84751073	2	4	56	1	0	0	0	0	0	0	0	1	14140	1277	45	3		3	SEMA3D	7	84751073	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1753999	84751073	74387590	349	62552											
CDK6	1021	broad.mit.edu	37	chr7	92291330	92291330	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagaaagactaggggaatAcaaaggggaatgagaatctt	14	3	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92291330	T	T	92291330	1	4	56	0	1	0	0	0	0	0	0	0	3178	406	14	5		5	CDK6	7	92291330	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	7540257	92291330	66847333	350	62553											
LMTK2	22853	broad.mit.edu	37	chr7	97822452	97822452	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcctggcgagagtgaggAgaccctgcgactcaccgaaa	12	13	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97822452	G	G	97822452	3	3	56	1	0	0	0	0	1	0	0	0	8933	304	11	5	2717	5	LMTK2	7	97822452	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	5531122	97822452	61316211	351	62554											
PLOD3	8985	broad.mit.edu	37	chr7	100853594	100853594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaacctgtgtgctctgggCgtggggtccccactcacgac	15	13	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100853594	A	A	100853594	1	1	56	0	1	0	0	0	0	0	0	0	12198	783	27	3		3	PLOD3	7	100853594	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3031142	100853594	58285069	352	62555											
RELN	5649	broad.mit.edu	37	chr7	103292315	103292315	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaaattttcaactctggtTaagtacattaaacaactgta	5	6	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103292315	A	A	103292315	1	1	56	0	1	0	0	0	0	0	0	0	13328	1769	61	5		5	RELN	7	103292315	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2438721	103292315	55846348	353	62556											
RELN	5649	broad.mit.edu	37	chr7	103629671	103629671	+	Frame_Shift_Del	DEL	C	-	-													ctccccatccccttccagctCcccgtggtgggtgcacagga							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103629671	-	-	103629671	7	5	56	1	0	1	0	1	0	0	0	0	13328	864	30	0	10509	0	RELN	7	103629671	Frame_Shift_Del	DEL	C	TCGA-17-Z025-01A-01W-0746-08	337356	103629671	55508992	354	62557											
LHFPL3	375612	broad.mit.edu	37	chr7	104172637	104172637	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagtgctacaatcatagctCactgtagcctcaaagtcctg	8	12	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104172637	G	G	104172637	1	3	56	0	1	0	0	0	0	0	0	0	8838	841	29	4		4	LHFPL3	7	104172637	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	542966	104172637	54966026	355	62558											
DOCK4	9732	broad.mit.edu	37	chr7	111809820	111809820	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttctcaactgcaaaatCtaaatgtcatggctgataag	6	8	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111809820	G	G	111809820	1	3	56	0	1	0	0	0	0	0	0	0	4729	928	32	4		4	DOCK4	7	111809820	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7637183	111809820	47328843	356	62559											
GRM8	2918	broad.mit.edu	37	chr7	126340072	126340072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaggatgttaactgatatTgggactacaattagatagaa	11	3	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126340072	A	A	126340072	1	1	56	0	1	0	0	0	0	0	0	0	6869	1827	63	5		5	GRM8	7	126340072	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	14530252	126340072	32798591	357	62560											
GCC1	79571	broad.mit.edu	37	chr7	127222355	127222355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatcctgcagctgatgcaCctcgacctccagcctgtgct	9	17	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127222355	A	A	127222355	3	1	56	1	0	0	0	0	1	0	0	0	6347	507	18	3	290	3	GCC1	7	127222355	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	882283	127222355	31916308	358	62561											
COPG2	26958	broad.mit.edu	37	chr7	130352403	130352403	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaacaaaacaaaaaaatgtCctgaacagctgttctacaca	4	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130352403	A	A	130352403	1	1	56	0	1	0	0	0	0	0	0	0	3764	870	30	3		3	COPG2	7	130352403	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3130048	130352403	28786260	359	62562											
PLXNA4	91584	broad.mit.edu	37	chr7	131895691	131895691	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttggcagtgggcagggttGggcgactcacagaggtgttc	18	7	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131895691	C	C	131895691	1	2	56	0	1	0	0	0	0	0	0	0	12217	1363	47	4		4	PLXNA4	7	131895691	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1543288	131895691	27242972	360	62563											
PLXNA4	91584	broad.mit.edu	37	chr7	132292890	132292890	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccatcactgccatcatcAtcatcactatcaccatcacc	1	19	7	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132292890	C	C	132292890	1	2	56	0	1	0	0	0	0	0	0	0	12217	232	8	5		5	PLXNA4	7	132292890	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	397199	132292890	26845773	361	62564											
CALD1	800	broad.mit.edu	37	chr7	134552432	134552432	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caatgatattgactctacctCctctctttcaggtccagaca	5	13	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134552432	A	A	134552432	1	1	56	0	1	0	0	0	0	0	0	0	2607	870	30	3		3	CALD1	7	134552432	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2259542	134552432	24586231	362	62565											
DGKI	9162	broad.mit.edu	37	chr7	137096842	137096842	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatgatagatgggaacataGagttttgatgaggaatgatg	13	1	0	6			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137096842	A	A	137096842	1	1	56	0	1	0	0	0	0	0	0	0	4511	957	33	4		4	DGKI	7	137096842	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2544410	137096842	22041821	363	62566											
SVOPL	136306	broad.mit.edu	37	chr7	138333867	138333867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaatgatgagcagggagcCcgcaagccagaacacctagg	13	12	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138333867	A	A	138333867	3	1	56	1	0	0	0	0	1	0	0	0	15542	623	22	2	964	2	SVOPL	7	138333867	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1237025	138333867	20804796	364	62567											
KIAA1549	57670	broad.mit.edu	37	chr7	138583815	138583815	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagtctttctccatcttgatCctccacaaagtagatgagct	7	11	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138583815	T	T	138583815	3	4	56	1	0	0	0	0	1	0	0	0	8314	855	30	4	2167	4	KIAA1549	7	138583815	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	249948	138583815	20554848	365	62568											
WEE2	494551	broad.mit.edu	37	chr7	141424003	141424003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaggtgacctgggccaCgcaacatcaataaacaaacc	7	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141424003	A	A	141424003	3	1	56	1	0	0	0	0	1	0	0	0	17472	535	19	3	1179	3	WEE2	7	141424003	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2840188	141424003	17714660	366	62569											
PRSS1	5644	broad.mit.edu	37	chr7	142458572	142458572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgctacaagtcgtaagtGtggggcccccgactgcaaag	12	12	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142458572	A	A	142458572	1	1	56	0	1	0	0	0	0	0	0	0	12720	1392	48	4		4	PRSS1	7	142458572	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1034569	142458572	16680091	367	62570											
CNTNAP2	26047	broad.mit.edu	37	chr7	146226730	146226730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtgctaagctcacatgGgcaggaaagcaggcagcata	13	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146226730	T	T	146226730	1	4	56	0	1	0	0	0	0	0	0	0	3679	1247	43	2		2	CNTNAP2	7	146226730	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3768158	146226730	12911933	368	62571											
CNTNAP2	26047	broad.mit.edu	37	chr7	147312998	147312998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgaaactgatcatgtggCtttctctgattttcctcccg	8	10	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147312998	A	A	147312998	1	1	56	0	1	0	0	0	0	0	0	0	3679	812	28	3		3	CNTNAP2	7	147312998	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1086268	147312998	11825665	369	62572											
SSPO	23145	broad.mit.edu	37	chr7	149523941	149523941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctggggtggggagcagGgatgaggaagggtagggagg	25	4	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149523941	T	T	149523941	1	4	56	0	1	0	0	0	0	0	0	0	15307	1247	43	2		2	SSPO	7	149523941	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2210943	149523941	9614722	370	62573											
FASTK	10922	broad.mit.edu	37	chr7	150774526	150774526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtagcaggaagggcccggCacctcatcctaatctgtccc	10	15	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150774526	A	A	150774526	1	1	56	0	1	0	0	0	0	0	0	0	5741	725	25	3		3	FASTK	7	150774526	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1250585	150774526	8364137	371	62574											
MLL3	58508	broad.mit.edu	37	chr7	151856048	151856048	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgctgctttctcacccGtcctctgagtccgtttgctt	10	13	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151856048	A	A	151856048	3	1	56	1	0	0	0	0	1	0	0	0	9715	1145	40	4	3229	4	MLL3	7	151856048	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1081522	151856048	7282615	372	62575											
LMBR1	64327	broad.mit.edu	37	chr7	156524934	156524934	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagacactggacatctgatCgtggaagaacaatgatgcct	10	9	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156524934	A	A	156524934	1	1	56	0	1	0	0	0	0	0	0	0	8914	899	31	3		3	LMBR1	7	156524934	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4668886	156524934	2613729	373	62576											
RP1L1	94137	broad.mit.edu	37	chr8	10469930	10469930	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgagaggtctcggcccTtgccttgcctggacagccct	12	15	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10469930	A	A	10469930	3	1	56	1	0	0	0	0	1	0	0	0	13644	1608	56	5	5528	5	RP1L1	8	10469930	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08		10469930	135894092	374	62577											
DLC1	10395	broad.mit.edu	37	chr8	12943415	12943415	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacaaatgtccaaaagattTtgtgtaccattctggcatgt	7	8	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12943415	A	A	12943415	4	1	56	1	0	0	0	0	0	1	0	0	4590	1850	64	5	98	5	DLC1	8	12943415	Nonsense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2473485	12943415	133420607	375	62578											
CNOT7	29883	broad.mit.edu	37	chr8	17104211	17104211	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgagctcgcgctcctcctCctcctcctcgccatagagac	8	19	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17104211	T	T	17104211	1	4	56	0	1	0	0	0	0	0	0	0	3656	870	30	4		4	CNOT7	8	17104211	5'Flank	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4160796	17104211	129259811	376	62579											
KCNU1	157855	broad.mit.edu	37	chr8	36698422	36698422	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcactgaccgcttgctctCcttttgactcctcgtcttcc	6	16	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36698422	A	A	36698422	1	1	56	0	1	0	0	0	0	0	0	0	8163	870	30	3		3	KCNU1	8	36698422	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	19594211	36698422	109665600	377	62580											
ANK1	286	broad.mit.edu	37	chr8	41547754	41547754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagctcaccttggcgcaGgggggcatggtgatgttcag	16	10	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41547754	T	T	41547754	2	4	56	1	0	0	0	0	0	0	0	1	620	987	35	2		2	ANK1	8	41547754	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4849332	41547754	104816268	378	62581											
SNTG1	54212	broad.mit.edu	37	chr8	51046156	51046156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgccccctctgacattctGggtagaagctgcctcctggc	10	15	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51046156	T	T	51046156	1	4	56	0	1	0	0	0	0	0	0	0	14988	1363	47	2		2	SNTG1	8	51046156	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9498402	51046156	95317866	379	62582											
SNTG1	54212	broad.mit.edu	37	chr8	51075444	51075444	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttactgcctcatgggagCctggacccagaaactttctc	8	14	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51075444	G	G	51075444	1	3	56	0	1	0	0	0	0	0	0	0	14988	754	26	4		4	SNTG1	8	51075444	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	29288	51075444	95288578	380	62583											
IMPAD1	54928	broad.mit.edu	37	chr8	57878619	57878619	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttaccaaacaggagacCaagcctgtcttgaaagtaca	10	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57878619	A	A	57878619	1	1	56	0	1	0	0	0	0	0	0	0	7795	609	21	2		2	IMPAD1	8	57878619	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6803175	57878619	88485403	381	62584											
RRS1	23212	broad.mit.edu	37	chr8	67341476	67341476	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgcagtttgacctggGcaacctgctggcgtcggacc	15	12	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67341476	A	A	67341476	3	1	56	1	0	0	0	0	1	0	0	0	13803	1203	42	4	112	4	RRS1	8	67341476	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9462857	67341476	79022546	382	62585											
C8orf34	116328	broad.mit.edu	37	chr8	69523586	69523586	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttggttgtcaattcagttCaactgcatttcttttggaaa	7	8	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69523586	G	G	69523586	1	3	56	0	1	0	0	0	0	0	0	0	2448	841	29	4		4	C8orf34	8	69523586	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2182110	69523586	76840436	383	62586											
RALYL	138046	broad.mit.edu	37	chr8	85292360	85292361	+	Intron	DNP	GG	TT	TT													gtagaaagagcatgcgttttGgtttcagacctgtgttggaa							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	85292361	TT	TT	85292360	1	4	56	0	1	0	0	0	0	0	0	0	13128	1363	47	2		2	RALYL	8	85292360	Intron	DNP	GG	TCGA-17-Z025-01A-01W-0746-08	15768774	85292360	61071662	384	62587											
CNBD1	168975	broad.mit.edu	37	chr8	88000029	88000029	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgtgaatcacatttattGatttgtgtatgttaaaccag	8	4	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88000029	C	C	88000029	1	2	56	0	1	0	0	0	0	0	0	0	3623	1305	45	4		4	CNBD1	8	88000029	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2707669	88000029	58363993	385	62588											
SLC26A7	115111	broad.mit.edu	37	chr8	92279457	92279457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgttgttgttgttgttGtgtctttatcttattttggt	9	2	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92279457	T	T	92279457	1	4	56	0	1	0	0	0	0	0	0	0	14636	1392	48	3		3	SLC26A7	8	92279457	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4279428	92279457	54084565	386	62589											
CDH17	1015	broad.mit.edu	37	chr8	95225535	95225535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcaggtgattacatagGcccttctgagaaacactagc	10	9	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95225535	T	T	95225535	1	4	56	0	1	0	0	0	0	0	0	0	3132	1218	42	3		3	CDH17	8	95225535	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2946078	95225535	51138487	387	62590											
MATN2	4147	broad.mit.edu	37	chr8	98932716	98932716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgctgagattataggcGtgagccactgcacccagccc	11	12	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98932716	T	T	98932716	1	4	56	0	1	0	0	0	0	0	0	0	9426	1160	40	3		3	MATN2	8	98932716	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3707181	98932716	47431306	388	62591											
SPAG1	6674	broad.mit.edu	37	chr8	101251339	101251339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccccacaggctcactttGtaagagtggtattaatgtgg	10	9	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101251339	T	T	101251339	1	4	56	0	1	0	0	0	0	0	0	0	15091	1392	48	3		3	SPAG1	8	101251339	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2318623	101251339	45112683	389	62592											
NCALD	83988	broad.mit.edu	37	chr8	103091024	103091024	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttattaccttattttattTtgcattcactcatcagtatc	2	10	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103091024	C	C	103091024	1	2	56	0	1	0	0	0	0	0	0	0	10296	1856	64	5		5	NCALD	8	103091024	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1839685	103091024	43272998	390	62593											
UBR5	51366	broad.mit.edu	37	chr8	103338891	103338891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactaaaaggaactacaccCctgaaaacaaaaaacataaa	4	9	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103338891	A	A	103338891	3	1	56	1	0	0	0	0	1	0	0	0	17031	637	22	2	7105	2	UBR5	8	103338891	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	247867	103338891	43025131	391	62594											
RIMS2	9699	broad.mit.edu	37	chr8	104930646	104930646	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaaacagtttctgtctttCtttttttttttaatcatttc	3	6	4	1	rs35503346		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104930646	A	A	104930646	1	1	56	0	1	0	0	0	0	0	0	0	13479	928	32	3		3	RIMS2	8	104930646	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1591755	104930646	41433376	392	62595											
DPYS	1807	broad.mit.edu	37	chr8	105396388	105396388	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacctcagaaacaagcagcCtcctgtcaggagtcctgtgc	9	15	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105396388	G	G	105396388	1	3	56	0	1	0	0	0	0	0	0	0	4786	696	24	4		4	DPYS	8	105396388	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	465742	105396388	40967634	393	62596											
DPYS	1807	broad.mit.edu	37	chr8	105456385	105456385	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtagtggaaatccacatgcActttctcctaaactgaagca	7	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105456385	T	T	105456385	1	4	56	0	1	0	0	0	0	0	0	0	4786	174	6	5		5	DPYS	8	105456385	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	59997	105456385	40907637	394	62597											
ZFPM2	23414	broad.mit.edu	37	chr8	106794576	106794576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagctcacacagtaataaCgaagtcaggactaaactaaa	6	10	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106794576	A	A	106794576	1	1	56	0	1	0	0	0	0	0	0	0	17784	551	19	3		3	ZFPM2	8	106794576	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1338191	106794576	39569446	395	62598											
ANGPT1	284	broad.mit.edu	37	chr8	108315503	108315503	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catattattaatataaatagTgtagattccacttttattaa	3	4	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108315503	A	A	108315503	3	1	56	1	0	0	0	0	1	0	0	0	610	1696	59	5	615	5	ANGPT1	8	108315503	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1520927	108315503	38048519	396	62599											
TMEM74	157753	broad.mit.edu	37	chr8	109688957	109688957	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagggctggaattttgtcTacattttttcattgacctat	8	6	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109688957	C	C	109688957	1	2	56	0	1	0	0	0	0	0	0	0	16325	1537	53	5		5	TMEM74	8	109688957	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1373454	109688957	36675065	397	62600											
TMEM74	157753	broad.mit.edu	37	chr8	109707986	109707986	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctaaggaactaaaaaaaGggggaaggggcagcatgggc	15	5	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109707986	T	T	109707986	1	4	56	0	1	0	0	0	0	0	0	0	16325	1015	35	2		2	TMEM74	8	109707986	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	19029	109707986	36656036	398	62601											
TMEM74	157753	broad.mit.edu	37	chr8	109797367	109797367	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccagcagcttccggaaagtCtgccaatagcaacagagtta	9	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109797367	A	A	109797367	1	1	56	0	1	0	0	0	0	0	0	0	16325	927	32	3		3	TMEM74	8	109797367	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	89381	109797367	36566655	399	62602											
CSMD3	114788	broad.mit.edu	37	chr8	113287540	113287541	+	Intron	DNP	GC	TA	TA													taaccccagcactttgggagGccgaggcagacggatcacct							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	113287541	TA	TA	113287540	1	4	56	0	1	0	0	0	0	0	0	0	3980	1218	42	3		3	CSMD3	8	113287540	Intron	DNP	GC	TCGA-17-Z025-01A-01W-0746-08	3490173	113287540	33076482	400	62603											
CSMD3	114788	broad.mit.edu	37	chr8	113395911	113395911	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgtgaaataataattacAggtaagaatacacatttcta	5	6	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113395911	T	T	113395911	1	4	56	0	1	0	0	0	0	0	0	0	3980	203	7	5		5	CSMD3	8	113395911	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	108371	113395911	32968111	401	62604											
CSMD3	114788	broad.mit.edu	37	chr8	113721315	113721315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgatttattcccatttGcatggtcttcatttatttcc	5	10	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113721315	T	T	113721315	1	4	56	0	1	0	0	0	0	0	0	0	3980	1334	46	3		3	CSMD3	8	113721315	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	325404	113721315	32642707	402	62605											
TRPS1	7227	broad.mit.edu	37	chr8	116427152	116427152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagatgatcttctgacctcCtctctaacgggcttccattg	7	12	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116427152	A	A	116427152	3	1	56	1	0	0	0	0	1	0	0	0	16718	681	24	2	904	2	TRPS1	8	116427152	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2705837	116427152	29936870	403	62606											
TRPS1	7227	broad.mit.edu	37	chr8	116605145	116605145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatagctcatgacaagtGtgttggcttggagtgtactc	11	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116605145	T	T	116605145	1	4	56	0	1	0	0	0	0	0	0	0	16718	1392	48	3		3	TRPS1	8	116605145	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	177993	116605145	29758877	404	62607											
COL14A1	7373	broad.mit.edu	37	chr8	121240416	121240416	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttcccagagctgtgaacTgttggcaggcagtgttccag	13	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121240416	C	C	121240416	1	2	56	0	1	0	0	0	0	0	0	0	3703	1595	55	5		5	COL14A1	8	121240416	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	4635271	121240416	25123606	405	62608											
COL14A1	7373	broad.mit.edu	37	chr8	121344786	121344786	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaggaatgaggtcctggtGatgagggggagggaagctat	18	4	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121344786	A	A	121344786	1	1	56	0	1	0	0	0	0	0	0	0	3703	1305	45	4		4	COL14A1	8	121344786	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	104370	121344786	25019236	406	62609											
SNTB1	6641	broad.mit.edu	37	chr8	121740648	121740648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatattgtgtgacgctgaGgtttgggatataaatgatcc	13	4	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121740648	T	T	121740648	1	4	56	0	1	0	0	0	0	0	0	0	14986	1015	35	2		2	SNTB1	8	121740648	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	395862	121740648	24623374	407	62610											
FER1L6	654463	broad.mit.edu	37	chr8	125014506	125014506	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctggggtttgggggctccTtcctggtaaagaggatctgg	16	7	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125014506	A	A	125014506	1	1	56	0	1	0	0	0	0	0	0	0	5872	1624	56	5		5	FER1L6	8	125014506	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	3273858	125014506	21349516	408	62611											
ADCY8	114	broad.mit.edu	37	chr8	131803663	131803663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtgggctggagaagtgCctggagaagacaggaaaact	17	6	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131803663	A	A	131803663	1	1	56	0	1	0	0	0	0	0	0	0	300	754	26	3		3	ADCY8	8	131803663	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6789157	131803663	14560359	409	62612											
LRRC6	23639	broad.mit.edu	37	chr8	133596010	133596010	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgctcgctgaccacctGtgattacttctcctacctaa	6	13	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133596010	A	A	133596010	3	1	56	1	0	0	0	0	1	0	0	0	9103	1377	48	4	251	4	LRRC6	8	133596010	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1792347	133596010	12768012	410	62613											
TG	7038	broad.mit.edu	37	chr8	133948137	133948137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaggctggttggcttagGcccgcggtggcttcacacgg	17	11	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133948137	T	T	133948137	1	4	56	0	1	0	0	0	0	0	0	0	15936	1218	42	3		3	TG	8	133948137	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	352127	133948137	12415885	411	62614											
WISP1	8840	broad.mit.edu	37	chr8	134237689	134237689	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatagcctacacaagccccTggagcccttgctccaccagc	8	18	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134237689	A	A	134237689	3	1	56	1	0	0	0	0	1	0	0	0	17499	1580	55	5	681	5	WISP1	8	134237689	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	289552	134237689	12126333	412	62615											
FAM135B	51059	broad.mit.edu	37	chr8	139470988	139470988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccatatggcctggatgacCtaaaatatataccatctatc	6	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139470988	A	A	139470988	1	1	56	0	1	0	0	0	0	0	0	0	5495	696	24	2		2	FAM135B	8	139470988	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5233299	139470988	6893034	413	62616											
PLEC	5339	broad.mit.edu	37	chr8	144993934	144993934	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcgaggcagccactgcccTgcagcagcgtccgcacggag	15	16	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144993934	G	G	144993934	3	3	56	1	0	0	0	0	1	0	0	0	12147	1580	55	5	3592	5	PLEC	8	144993934	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	5522946	144993934	1370088	414	62617											
KIAA2026	158358	broad.mit.edu	37	chr9	5921211	5921211	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattttgtaatatgttaatTgatggtatagctggcacagt	9	4	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5921211	C	C	5921211	2	2	56	1	0	0	0	0	0	0	0	1	8340	1799	63	5		5	KIAA2026	9	5921211	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08		5921211	135292220	415	62618											
PTPRD	5789	broad.mit.edu	37	chr9	8317961	8317961	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcaggagacaatgaatGgggagaagcaaaagaaggga	15	5	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8317961	C	C	8317961	1	2	56	0	1	0	0	0	0	0	0	0	12907	1363	47	4		4	PTPRD	9	8317961	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2396750	8317961	132895470	416	62619											
PTPRD	5789	broad.mit.edu	37	chr9	8372141	8372141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactgagaaaagtctcatGggattgccatagtagaaaat	9	7	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8372141	T	T	8372141	1	4	56	0	1	0	0	0	0	0	0	0	12907	1363	47	2		2	PTPRD	9	8372141	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	54180	8372141	132841290	417	62620											
KLHL9	55958	broad.mit.edu	37	chr9	21334680	21334680	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaacagggaagatttcaTctccatcacctggtaccagg	10	10	3	2	rs140581276		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21334680	C	C	21334680	3	2	56	1	0	0	0	0	1	0	0	0	8467	1435	50	5	1678	5	KLHL9	9	21334680	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	12962539	21334680	119878751	418	62621											
ELAVL2	1993	broad.mit.edu	37	chr9	23749045	23749045	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggatgatgacaaggtactgGaaatggataagggtgacggc	17	4	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23749045	C	C	23749045	1	2	56	0	1	0	0	0	0	0	0	0	5092	1189	41	4		4	ELAVL2	9	23749045	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2414365	23749045	117464386	419	62622											
LINGO2	158038	broad.mit.edu	37	chr9	28371567	28371567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctaagaccatcaccttGggggttaggacttcagcaga	11	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28371567	T	T	28371567	1	4	56	0	1	0	0	0	0	0	0	0	8888	1363	47	2		2	LINGO2	9	28371567	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4622522	28371567	112841864	420	62623											
FRMPD1	22844	broad.mit.edu	37	chr9	37735540	37735540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactaattccccttccacCctctgcagttacaggataga	7	13	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37735540	A	A	37735540	1	1	56	0	1	0	0	0	0	0	0	0	6117	638	22	2		2	FRMPD1	9	37735540	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	9363973	37735540	103477891	421	62624											
CNTNAP3	79937	broad.mit.edu	37	chr9	39104435	39104435	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggataaatgactccagaagcCagaacacagactcttgcttt	8	10	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39104435	A	A	39104435	1	1	56	0	1	0	0	0	0	0	0	0	3680	609	21	2		2	CNTNAP3	9	39104435	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1368895	39104435	102108996	422	62625											
TRPM6	140803	broad.mit.edu	37	chr9	77438473	77438473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacattctactccttttcCatacacctccacctcattat	1	15	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77438473	T	T	77438473	1	4	56	0	1	0	0	0	0	0	0	0	16715	609	21	4		4	TRPM6	9	77438473	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	38334038	77438473	63774958	423	62626											
TLE4	7091	broad.mit.edu	37	chr9	82207140	82207140	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcttcttcctcttcttcTtcttcttcttccttctgctt	1	15	10	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82207140	C	C	82207140	1	2	56	0	1	0	0	0	0	0	0	0	16064	1624	56	5		5	TLE4	9	82207140	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	4768667	82207140	59006291	424	62627											
DAPK1	1612	broad.mit.edu	37	chr9	90321137	90321137	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggggaagttgctgtccGtggagaccccacgggcgctg	16	12	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90321137	A	A	90321137	3	1	56	1	0	0	0	0	1	0	0	0	4268	1145	40	4	3249	4	DAPK1	9	90321137	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	8113997	90321137	50892294	425	62628											
FGD3	89846	broad.mit.edu	37	chr9	95768376	95768376	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatgtacggcgagtatGtcaagaactttgaccgagcc	12	8	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95768376	A	A	95768376	3	1	56	1	0	0	0	0	1	0	0	0	5891	1377	48	4	765	4	FGD3	9	95768376	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5447239	95768376	45445055	426	62629											
TMOD1	7111	broad.mit.edu	37	chr9	100326299	100326299	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgtttctgtgagccacctCcctttcatcggtcactctag	7	14	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100326299	A	A	100326299	1	1	56	0	1	0	0	0	0	0	0	0	16356	870	30	3		3	TMOD1	9	100326299	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4557923	100326299	40887132	427	62630											
COL15A1	1306	broad.mit.edu	37	chr9	101759426	101759426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgattactatgtgtccagcCggggccatgtatgtaacata	11	8	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101759426	A	A	101759426	1	1	56	0	1	0	0	0	0	0	0	0	3704	667	23	1		1	COL15A1	9	101759426	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1433127	101759426	39454005	428	62631											
COL15A1	1306	broad.mit.edu	37	chr9	101765657	101765657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtggctggagaaggctaGgcagtctgttctcaccagcc	14	11	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101765657	T	T	101765657	1	4	56	0	1	0	0	0	0	0	0	0	3704	1015	35	2		2	COL15A1	9	101765657	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6231	101765657	39447774	429	62632											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112642844	112642844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacagtccaaagtgcttcGggagaaatggctgctgcagg	13	10	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112642844	A	A	112642844	3	1	56	1	0	0	0	0	1	0	0	0	11504	1116	39	4	150	4	PALM2-AKAP2	9	112642844	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10877187	112642844	28570587	430	62633											
KIAA1958	158405	broad.mit.edu	37	chr9	115337206	115337206	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctccagaccaattgtccaGaagactgctagggtatctct	8	11	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115337206	A	A	115337206	2	1	56	1	0	0	0	0	0	0	0	1	8334	933	33	4		4	KIAA1958	9	115337206	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2694362	115337206	25876225	431	62634											
PAPPA	5069	broad.mit.edu	37	chr9	119013312	119013312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaacacatttggctaagCtcagggttcatgtgaccctc	10	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119013312	A	A	119013312	1	1	56	0	1	0	0	0	0	0	0	0	11526	812	28	3		3	PAPPA	9	119013312	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3676106	119013312	22200119	432	62635											
ASTN2	23245	broad.mit.edu	37	chr9	120072980	120072980	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtgcagtggtatgatcacGactcactgcagcctggacct	12	11	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120072980	T	T	120072980	1	4	56	0	1	0	0	0	0	0	0	0	1069	1073	37	3		3	ASTN2	9	120072980	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1059668	120072980	21140451	433	62636											
ASTN2	23245	broad.mit.edu	37	chr9	120157847	120157847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagacaaaagaactcaaGgctggtgttctgagttctgt	13	6	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120157847	T	T	120157847	1	4	56	0	1	0	0	0	0	0	0	0	1069	1015	35	2		2	ASTN2	9	120157847	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	84867	120157847	21055584	434	62637											
OR1J2	26740	broad.mit.edu	37	chr9	125274018	125274019	+	Missense_Mutation	DNP	GG	TT	TT													tagagcaacatttttctcttGgtgacatctgactttttaaa							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	125274019	TT	TT	125274018	3	4	56	1	0	0	0	0	1	0	0	0	11054	1357	47	2	940	2	OR1J2	9	125274018	Missense_Mutation	DNP	GG	TCGA-17-Z025-01A-01W-0746-08	5116171	125274018	15939413	435	62638											
GLE1	2733	broad.mit.edu	37	chr9	131285001	131285001	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaaggtgcaagccctctcgGagatggcatctgaacaactg	13	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131285001	C	C	131285001	3	2	56	1	0	0	0	0	1	0	0	0	6499	1175	41	4	501	4	GLE1	9	131285001	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6010983	131285001	9928430	436	62639			1	52		5	5	780	G		6.229045e-09
GLE1	2733	broad.mit.edu	37	chr9	131285503	131285503	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggagagaaaagaaagaaaGaaaaacaatttcaggaagta	11	2	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131285503	A	A	131285503	1	1	56	0	1	0	0	0	0	0	0	0	6499	957	33	4		4	GLE1	9	131285503	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	502	131285503	9927928	437	62640			1	52		5	5	780	G		6.229045e-09
GLE1	2733	broad.mit.edu	37	chr9	131285584	131285584	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaagccttgggacaccaaGagaagctaaaagctgagcac	12	9	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131285584	A	A	131285584	3	1	56	1	0	0	0	0	1	0	0	0	6499	943	33	4	625	4	GLE1	9	131285584	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	81	131285584	9927847	438	62641			1	52		5	5	780	G		6.229045e-09
GLE1	2733	broad.mit.edu	37	chr9	131285737	131285737	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccgtattatgcctgtgtatGactaaccttgggatgtcctc	10	10	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131285737	T	T	131285737	1	4	56	0	1	0	0	0	0	0	0	0	6499	1305	45	3		3	GLE1	9	131285737	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	153	131285737	9927694	439	62642			1	52		5	5	780	G		6.229045e-09
GLE1	2733	broad.mit.edu	37	chr9	131285780	131285780	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgctctgagcccatctgtGaaaatatgtagcccacgtag	9	12	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131285780	A	A	131285780	1	1	56	0	1	0	0	0	0	0	0	0	6499	1305	45	4		4	GLE1	9	131285780	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	43	131285780	9927651	440	62643			1	52		5	5	780	G		6.229045e-09
PPP2R4	5524	broad.mit.edu	37	chr9	131877922	131877922	+	Intron	DEL	T	-	-													cactttagggagagtttgcaTtttttttttttttgagatgg					rs10706402		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131877922	-	-	131877922	6	5	56	0	1	1	0	1	0	0	0	0	12492	1508	52	0		0	PPP2R4	9	131877922	Intron	DEL	T	TCGA-17-Z025-01A-01W-0746-08	592142	131877922	9335509	441	62644											
C9orf50	375759	broad.mit.edu	37	chr9	132375845	132375845	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggacgccactggcagggcGgccttctggttcacaatgac	13	13	2	1	rs139948871		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132375845	T	T	132375845	2	4	56	1	0	0	0	0	0	0	0	1	2513	1103	39	1		1	C9orf50	9	132375845	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	497923	132375845	8837586	442	62645											
USP20	10868	broad.mit.edu	37	chr9	132631133	132631133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcatggtaccctctctGcccccagagccggacaatga	9	17	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132631133	T	T	132631133	1	4	56	0	1	0	0	0	0	0	0	0	17178	1334	46	3		3	USP20	9	132631133	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	255288	132631133	8582298	443	62646											
PRDM12	59335	broad.mit.edu	37	chr9	133539667	133539667	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccaaggggaagacggccCcggccgagtgtgcgagaggc	18	11	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133539667	A	A	133539667	1	1	56	0	1	0	0	0	0	0	0	0	12559	638	22	2		2	PRDM12	9	133539667	5'Flank	SNP	C	TCGA-17-Z025-01A-01W-0746-08	908534	133539667	7673764	444	62647											
ADARB2	105	broad.mit.edu	37	chr10	1650772	1650772	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagacagaaggagggaagGagagaggaaggaaaaaagga	18	1	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1650772	T	T	1650772	1	4	56	0	1	0	0	0	0	0	0	0	283	1189	41	3		3	ADARB2	10	1650772	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08		1650772	133883975	445	62648											
PIP4K2A	5305	broad.mit.edu	37	chr10	22903326	22903326	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcataattgagtagtgcggCaggatactgagttagatctg	12	5	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22903326	T	T	22903326	1	4	56	0	1	0	0	0	0	0	0	0	12031	725	25	4		4	PIP4K2A	10	22903326	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	21252554	22903326	112631421	446	62649											
BMS1	9790	broad.mit.edu	37	chr10	43292056	43292056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatgtctgaagatgacgGgttggaaaacggctctagtg	14	5	2	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43292056	T	T	43292056	3	4	56	1	0	0	0	0	1	0	0	0	1478	1232	43	2	1398	2	BMS1	10	43292056	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	20388730	43292056	92242691	447	62650											
MAPK8	5599	broad.mit.edu	37	chr10	49634682	49634682	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttctgtttcttcatgAagactacgtcaaataaacta	5	7	4	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49634682	T	T	49634682	1	4	56	0	1	0	0	0	0	0	0	0	9375	261	9	5		5	MAPK8	10	49634682	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	6342626	49634682	85900065	448	62651											
ERCC6	2074	broad.mit.edu	37	chr10	50668435	50668435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctggcacttctctgttGgagatgttgatgaaggatgc	12	7	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50668435	T	T	50668435	3	4	56	1	0	0	0	0	1	0	0	0	5259	1348	47	2	443	2	ERCC6	10	50668435	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1033753	50668435	84866312	449	62652											
ZWINT	11130	broad.mit.edu	37	chr10	58121091	58121091	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggcaggcgattggctgcAgaggttagtgggcgggcatc	20	8	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58121091	C	C	58121091	1	2	56	0	1	0	0	0	0	0	0	0	18378	203	7	5		5	ZWINT	10	58121091	5'Flank	SNP	A	TCGA-17-Z025-01A-01W-0746-08	7452656	58121091	77413656	450	62653											
ANK3	288	broad.mit.edu	37	chr10	61836088	61836088	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagtgaagcctgacttGgctggcccaggcactgtaat	13	9	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61836088	A	A	61836088	2	1	56	1	0	0	0	0	0	0	0	1	622	1335	47	4		4	ANK3	10	61836088	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3714997	61836088	73698659	451	62654											
CTNNA3	29119	broad.mit.edu	37	chr10	67703109	67703109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttatgtcgtttttaatatGcattgtgatccagatgctgg	10	5	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67703109	T	T	67703109	1	4	56	0	1	0	0	0	0	0	0	0	4048	1334	46	3		3	CTNNA3	10	67703109	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5867021	67703109	67831638	452	62655											
CTNNA3	29119	broad.mit.edu	37	chr10	67780018	67780018	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgcaaaagtgcaggagggTagacttgagctgaagaaagt	15	4	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67780018	C	C	67780018	1	2	56	0	1	0	0	0	0	0	0	0	4048	1653	57	5		5	CTNNA3	10	67780018	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	76909	67780018	67754729	453	62656											
CTNNA3	29119	broad.mit.edu	37	chr10	67883610	67883610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcagctgggaggcaggGcaccaagttcctaggctgca	16	10	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67883610	T	T	67883610	1	4	56	0	1	0	0	0	0	0	0	0	4048	1218	42	3		3	CTNNA3	10	67883610	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	103592	67883610	67651137	454	62657											
CTNNA3	29119	broad.mit.edu	37	chr10	69094121	69094121	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcctgcaattaaccagttCatctaggctttggactgcca	7	13	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69094121	G	G	69094121	1	3	56	0	1	0	0	0	0	0	0	0	4048	841	29	4		4	CTNNA3	10	69094121	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1210511	69094121	66440626	455	62658											
COL13A1	1305	broad.mit.edu	37	chr10	71588465	71588465	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctctcctccccacttggCctcggccatgagttctgctg	8	17	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71588465	T	T	71588465	1	4	56	0	1	0	0	0	0	0	0	0	3702	754	26	4		4	COL13A1	10	71588465	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2494344	71588465	63946282	456	62659											
USP54	159195	broad.mit.edu	37	chr10	75301079	75301079	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagtgctcactgctcctaaGcaatactaagacgcaagaac	7	12	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75301079	A	A	75301079	1	1	56	0	1	0	0	0	0	0	0	0	17212	986	34	4		4	USP54	10	75301079	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3712614	75301079	60233668	457	62660											
DUSP13	51207	broad.mit.edu	37	chr10	76855256	76855256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctctctggactcccacCcaccagtgctactggaataa	7	14	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76855256	A	A	76855256	1	1	56	0	1	0	0	0	0	0	0	0	4853	638	22	2		2	DUSP13	10	76855256	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1554177	76855256	58679491	458	62661											
GRID1	2894	broad.mit.edu	37	chr10	87679774	87679774	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgcacacccctaaccaGgggcccagagtgccacgaaa	11	14	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87679774	A	A	87679774	1	1	56	0	1	0	0	0	0	0	0	0	6837	1015	35	4		4	GRID1	10	87679774	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10824518	87679774	47854973	459	62662											
LIPK	643414	broad.mit.edu	37	chr10	90488327	90488327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaccaaacaggagagggcGccgtagcttcaccggaacct	13	13	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90488327	A	A	90488327	1	1	56	0	1	0	0	0	0	0	0	0	8900	1102	38	4		4	LIPK	10	90488327	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2808553	90488327	45046420	460	62663											
ANKRD1	27063	broad.mit.edu	37	chr10	92677534	92677534	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcttccattaacttctcCacaattgccaaatgtccttc	3	15	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92677534	A	A	92677534	2	1	56	1	0	0	0	0	0	0	0	1	637	581	21	2		2	ANKRD1	10	92677534	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2189207	92677534	42857213	461	62664											
MYOF	26509	broad.mit.edu	37	chr10	95152686	95152686	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcataaacctgtatatgatgCagccccagttcccgaagatg	9	11	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95152686	G	G	95152686	3	3	56	1	0	0	0	0	1	0	0	0	10183	710	25	4	4893	4	MYOF	10	95152686	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2475152	95152686	40382061	462	62665											
CYP2C8	1558	broad.mit.edu	37	chr10	96802716	96802716	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacaccggtggggacaagGtcactgtatctctggatctc	13	11	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96802716	A	A	96802716	2	1	56	1	0	0	0	0	0	0	0	1	4200	1252	44	4		4	CYP2C8	10	96802716	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1650030	96802716	38732031	463	62666											
HPSE2	60495	broad.mit.edu	37	chr10	100773178	100773178	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttcaggaagaacgaagaGattcttggccaccaatatcc	9	9	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100773178	C	C	100773178	1	2	56	0	1	0	0	0	0	0	0	0	7412	957	33	4		4	HPSE2	10	100773178	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3970462	100773178	34761569	464	62667											
PDCD11	22984	broad.mit.edu	37	chr10	105173785	105173785	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttcaagccagggaacacTcacaagtgtagaattattga	9	9	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105173785	C	C	105173785	2	2	56	1	0	0	0	0	0	0	0	1	11711	1538	54	5		5	PDCD11	10	105173785	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	4400607	105173785	30360962	465	62668											
PDCD11	22984	broad.mit.edu	37	chr10	105191997	105191997	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcttaaagaaagtaagTagttttgccactcggcaatg	9	7	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105191997	C	C	105191997	1	2	56	0	1	0	0	0	0	0	0	0	11711	1653	57	5		5	PDCD11	10	105191997	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	18212	105191997	30342750	466	62669											
SORCS1	114815	broad.mit.edu	37	chr10	108412234	108412234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcccccgcggggctttcCctgggcacttctgcggtttg	14	15	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108412234	A	A	108412234	3	1	56	1	0	0	0	0	1	0	0	0	15044	623	22	2	1395	2	SORCS1	10	108412234	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3220237	108412234	27122513	467	62670											
SORCS1	114815	broad.mit.edu	37	chr10	108459151	108459151	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtgctgataacatgcatgtCctgtgaaaagacacaaggtc	11	8	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108459151	G	G	108459151	3	3	56	1	0	0	0	0	1	0	0	0	15044	869	30	4	2578	4	SORCS1	10	108459151	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	46917	108459151	27075596	468	62671											
ATRNL1	26033	broad.mit.edu	37	chr10	117001379	117001379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactattttgaaagaaagtGggtttgccagataccttcat	10	6	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117001379	T	T	117001379	3	4	56	1	0	0	0	0	1	0	0	0	1211	1348	47	2	1590	2	ATRNL1	10	117001379	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	8542228	117001379	18533368	469	62672											
ADAM12	8038	broad.mit.edu	37	chr10	127857583	127857583	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgagccgagatcgcaccaGtgcactccagcctgggccac	12	15	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127857583	C	C	127857583	1	2	56	0	1	0	0	0	0	0	0	0	236	1044	36	4		4	ADAM12	10	127857583	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10856204	127857583	7677164	470	62673											
DOCK1	1793	broad.mit.edu	37	chr10	129160164	129160164	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttcttatactaatggctGggaaagttcaaaatcatcat	6	8	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129160164	A	A	129160164	1	1	56	0	1	0	0	0	0	0	0	0	4724	1363	47	4		4	DOCK1	10	129160164	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1302581	129160164	6374583	471	62674											
OR52J3	119679	broad.mit.edu	37	chr11	5068378	5068378	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttttgtagtttctttctTtgttctgaacctggtgctca	8	8	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5068378	C	C	5068378	3	2	56	1	0	0	0	0	1	0	0	0	11216	1841	64	5	625	5	OR52J3	11	5068378	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08		5068378	129938138	472	62675											
OR52N1	79473	broad.mit.edu	37	chr11	5809704	5809704	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccatgagcatgagcacccCagactccatccctgtgaagg	11	14	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5809704	T	T	5809704	3	4	56	1	0	0	0	0	1	0	0	0	11221	594	21	4	622	4	OR52N1	11	5809704	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	741326	5809704	129196812	473	62676											
TRIM5	85363	broad.mit.edu	37	chr11	5949893	5949893	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agcgcgacttccctgaccctCcccctgcagaccactgaacc	7	20	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5949893	G	G	5949893	1	3	56	0	1	0	0	0	0	0	0	0	16650	870	30	4		4	TRIM5	11	5949893	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	140189	5949893	129056623	474	62677											
ZNF215	7762	broad.mit.edu	37	chr11	6977244	6977244	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttacttcaaatttaatttaGactcagtaggtaagcaacat	5	7	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6977244	T	T	6977244	3	4	56	1	0	0	0	0	1	0	0	0	17897	942	33	3	1054	3	ZNF215	11	6977244	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1027351	6977244	128029272	475	62678											
PLEKHA7	144100	broad.mit.edu	37	chr11	16876505	16876505	+	Frame_Shift_Del	DEL	C	-	-													cgaatggcctggtctctcttCccaaagctgtggactttact							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16876505	-	-	16876505	7	5	56	1	0	1	0	1	0	0	0	0	12156	842	30	0	2984	0	PLEKHA7	11	16876505	Frame_Shift_Del	DEL	C	TCGA-17-Z025-01A-01W-0746-08	9899261	16876505	118130011	476	62679											
ABCC8	6833	broad.mit.edu	37	chr11	17448578	17448578	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttcccctccactgggcccTgaggatacatgtattacctg	8	13	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17448578	A	A	17448578	1	1	56	0	1	0	0	0	0	0	0	0	58	1595	55	5		5	ABCC8	11	17448578	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	572073	17448578	117557938	477	62680											
SAAL1	113174	broad.mit.edu	37	chr11	18105129	18105129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaattcacataaaatatCctttaagattttcaagtgga	5	5	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18105129	A	A	18105129	3	1	56	1	0	0	0	0	1	0	0	0	13912	855	30	3	244	3	SAAL1	11	18105129	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	656551	18105129	116901387	478	62681											
SLC17A6	57084	broad.mit.edu	37	chr11	22362974	22362974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggggaggtcgacggcCctcctcccaaccccgacggg	17	15	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22362974	A	A	22362974	1	1	56	0	1	0	0	0	0	0	0	0	14534	638	22	2		2	SLC17A6	11	22362974	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4257845	22362974	112643542	479	62682											
SLC17A6	57084	broad.mit.edu	37	chr11	22381091	22381091	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggtatgtaacttcagggtGaagcctttttaagattggca	12	5	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22381091	T	T	22381091	1	4	56	0	1	0	0	0	0	0	0	0	14534	1305	45	3		3	SLC17A6	11	22381091	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	18117	22381091	112625425	480	62683											
RCN1	5954	broad.mit.edu	37	chr11	32122135	32122136	+	Missense_Mutation	DNP	GG	TT	TT													aagaacggggatgggtttgtGgatcaggatgagtatattgg							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32122136	TT	TT	32122135	3	4	56	1	0	0	0	0	1	0	0	0	13287	1335	47	2	683	2	RCN1	11	32122135	Missense_Mutation	DNP	GG	TCGA-17-Z025-01A-01W-0746-08	9741044	32122135	102884381	481	62684											
PAMR1	25891	broad.mit.edu	37	chr11	35492305	35492305	+	Frame_Shift_Del	DEL	C	-	-													gccatcgcggttgtctccatCacgaacctcaacatagtcat							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35492305	-	-	35492305	7	5	56	1	0	1	0	1	0	0	0	0	11507	826	29	0	1689	0	PAMR1	11	35492305	Frame_Shift_Del	DEL	C	TCGA-17-Z025-01A-01W-0746-08	3370170	35492305	99514211	482	62685											
LRRC4C	57689	broad.mit.edu	37	chr11	41089838	41089838	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctataattccagctattcagGaggctgaggcaggagaatca	11	8	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41089838	A	A	41089838	1	1	56	0	1	0	0	0	0	0	0	0	9095	1189	41	4		4	LRRC4C	11	41089838	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5597533	41089838	93916678	483	62686											
OR4S2	219431	broad.mit.edu	37	chr11	55419256	55419256	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgagaaatgcagaagtaAagaatgcaatgaagaaactg	10	5	0	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55419256	G	G	55419256	3	3	56	1	0	0	0	0	1	0	0	0	11177	15	1	5	879	5	OR4S2	11	55419256	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	14329418	55419256	79587260	484	62687											
OR5M11	219487	broad.mit.edu	37	chr11	56310370	56310370	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtcatatatggccacatAgcggtcataggccattgctg	12	9	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56310370	G	G	56310370	3	3	56	1	0	0	0	0	1	0	0	0	11268	420	15	5	556	5	OR5M11	11	56310370	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	891114	56310370	78696146	485	62688											
OR5M1	390168	broad.mit.edu	37	chr11	56380754	56380754	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatatttggagtaacattGgaagaatagcaaatgtctac	9	5	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56380754	A	A	56380754	2	1	56	1	0	0	0	0	0	0	0	1	11266	1335	47	4		4	OR5M1	11	56380754	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	70384	56380754	78625762	486	62689											
GLYATL1	92292	broad.mit.edu	37	chr11	58722740	58722740	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcactcctcttggttacGgaagatattctgaagctcaa	9	9	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58722740	A	A	58722740	2	1	56	1	0	0	0	0	0	0	0	1	6544	1103	39	4		4	GLYATL1	11	58722740	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2341986	58722740	76283776	487	62690											
CCDC88B	283234	broad.mit.edu	37	chr11	64108006	64108006	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggtgagaaggggtgcttgGgctcactggggcaggtcgga	21	7	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64108006	A	A	64108006	1	1	56	0	1	0	0	0	0	0	0	0	2892	1247	43	4		4	CCDC88B	11	64108006	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5385266	64108006	70898510	488	62691											
PAK1	5058	broad.mit.edu	37	chr11	77175292	77175292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttaaaatgttccctctgCctgacatgctttttccccct	4	14	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77175292	A	A	77175292	1	1	56	0	1	0	0	0	0	0	0	0	11493	754	26	3		3	PAK1	11	77175292	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	13067286	77175292	57831224	489	62692											
CLNS1A	1207	broad.mit.edu	37	chr11	77340700	77340700	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgcccgcctcggcctcccaGagtgctgggattacaggcgt	13	16	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77340700	A	A	77340700	1	1	56	0	1	0	0	0	0	0	0	0	3580	957	33	4		4	CLNS1A	11	77340700	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	165408	77340700	57665816	490	62693											
GAB2	9846	broad.mit.edu	37	chr11	77988799	77988799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagaagggacacaacccCctggaagcatgccaatatat	11	10	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77988799	A	A	77988799	1	1	56	0	1	0	0	0	0	0	0	0	6209	638	22	2		2	GAB2	11	77988799	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	648099	77988799	57017717	491	62694											
ODZ4	26011	broad.mit.edu	37	chr11	78381153	78381153	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatagttgtagtcaaaacgGgcgttgaccatgccttcctc	9	11	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78381153	A	A	78381153	2	1	56	1	0	0	0	0	0	0	0	1	10932	1219	43	4		4	ODZ4	11	78381153	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	392354	78381153	56625363	492	62695											
ODZ4	26011	broad.mit.edu	37	chr11	79095141	79095141	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggcacacatgccagcctGatgaccaggaatttcattca	8	12	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79095141	T	T	79095141	1	4	56	0	1	0	0	0	0	0	0	0	10932	1305	45	3		3	ODZ4	11	79095141	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	713988	79095141	55911375	493	62696											
C11orf73	51501	broad.mit.edu	37	chr11	86023489	86023489	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccctttattttgagcctaTgtgtgtctgcacgtgagatg	10	8	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86023489	C	C	86023489	1	2	56	0	1	0	0	0	0	0	0	0	1673	1479	51	5		5	C11orf73	11	86023489	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	6928348	86023489	48983027	494	62697											
TYR	7299	broad.mit.edu	37	chr11	88911387	88911387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcttttataataggacctGccagtgctctggcaacttca	8	11	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88911387	T	T	88911387	3	4	56	1	0	0	0	0	1	0	0	0	16939	1319	46	3	268	3	TYR	11	88911387	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2887898	88911387	46095129	495	62698											
MTNR1B	4544	broad.mit.edu	37	chr11	92700344	92700344	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctgttgctctcctgaGgacatgttggtcattcctcc	9	12	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92700344	A	A	92700344	1	1	56	0	1	0	0	0	0	0	0	0	10046	1015	35	4		4	MTNR1B	11	92700344	5'Flank	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3788957	92700344	42306172	496	62699											
DDI1	414301	broad.mit.edu	37	chr11	103907501	103907501	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcccgccccagcccgcCagtgagccgcccatgccctc	11	22	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103907501	A	A	103907501	1	1	56	0	1	0	0	0	0	0	0	0	4361	609	21	2		2	DDI1	11	103907501	5'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	11207157	103907501	31099015	497	62700											
NCAM1	4684	broad.mit.edu	37	chr11	112906098	112906098	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actaacaataatgacatcgaGatcttggatcccttattgaa	6	8	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112906098	T	T	112906098	1	4	56	0	1	0	0	0	0	0	0	0	10297	957	33	3		3	NCAM1	11	112906098	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	8998597	112906098	22100418	498	62701											
HTR3A	3359	broad.mit.edu	37	chr11	113857446	113857446	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgccatcggcactcctctCattggtaaggcccctcctgg	9	16	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113857446	A	A	113857446	2	1	56	1	0	0	0	0	0	0	0	1	7514	813	29	3		3	HTR3A	11	113857446	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	951348	113857446	21149070	499	62702											
ZBTB16	7704	broad.mit.edu	37	chr11	114117821	114117821	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttggaggtggtgaatacAggccgtcgcatccttctcat	11	10	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114117821	T	T	114117821	1	4	56	0	1	0	0	0	0	0	0	0	17652	203	7	5		5	ZBTB16	11	114117821	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	260375	114117821	20888695	500	62703											
FAM55A	120400	broad.mit.edu	37	chr11	114392743	114392743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttccaatcacatgatcagGtgggtggatagtgtcagtgc	12	7	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114392743	T	T	114392743	3	4	56	1	0	0	0	0	1	0	0	0	5635	1261	44	3	56	3	FAM55A	11	114392743	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	274922	114392743	20613773	501	62704											
SIK3	23387	broad.mit.edu	37	chr11	116747710	116747710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctgctccatggagaggCgcttattgggatctaacacc	11	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116747710	A	A	116747710	3	1	56	1	0	0	0	0	1	0	0	0	14432	768	27	3	3119	3	SIK3	11	116747710	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2354967	116747710	18258806	502	62705											
DSCAML1	57453	broad.mit.edu	37	chr11	117572678	117572678	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggcagctgtggttactgcAgtgctccacactccacatcc	10	14	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117572678	T	T	117572678	1	4	56	0	1	0	0	0	0	0	0	0	4809	203	7	5		5	DSCAML1	11	117572678	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	824968	117572678	17433838	503	62706											
PHLDB1	23187	broad.mit.edu	37	chr11	118498238	118498238	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtgggcgctacctgctGtctcccccaaccagccccgg	11	17	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118498238	T	T	118498238	2	4	56	1	0	0	0	0	0	0	0	1	11946	1364	48	3		3	PHLDB1	11	118498238	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	925560	118498238	16508278	504	62707											
NLRX1	79671	broad.mit.edu	37	chr11	119045890	119045890	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagtggctgagctcgtGggccgtgttggggaggacgt	20	6	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119045890	T	T	119045890	2	4	56	1	0	0	0	0	0	0	0	1	10580	1335	47	2		2	NLRX1	11	119045890	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	547652	119045890	15960626	505	62708											
CRTAM	56253	broad.mit.edu	37	chr11	122720618	122720618	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatcattactgctcctactCtcagttcttgcctctcccct	3	16	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122720618	A	A	122720618	1	1	56	0	1	0	0	0	0	0	0	0	3929	928	32	3		3	CRTAM	11	122720618	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3674728	122720618	12285898	506	62709											
CRTAM	56253	broad.mit.edu	37	chr11	122722484	122722484	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaacgtaaccctgcaagatGaaggcgtgtacaagtgctta	10	9	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122722484	T	T	122722484	4	4	56	1	0	0	0	0	0	1	0	0	3929	1291	45	3	287	3	CRTAM	11	122722484	Nonsense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1866	122722484	12284032	507	62710											
ROBO4	54538	broad.mit.edu	37	chr11	124756441	124756441	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccagggcccgggcaaagtGagcatcagcgaggaaggagc	17	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124756441	T	T	124756441	3	4	56	1	0	0	0	0	1	0	0	0	13627	1290	45	3	322	3	ROBO4	11	124756441	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2033957	124756441	10250075	508	62711											
KIRREL3	84623	broad.mit.edu	37	chr11	126597386	126597386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggacttggtgtccatGgtaagtctggaggcctgaag	16	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126597386	T	T	126597386	1	4	56	0	1	0	0	0	0	0	0	0	8397	1363	47	2		2	KIRREL3	11	126597386	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1840945	126597386	8409130	509	62712											
FLI1	2313	broad.mit.edu	37	chr11	128680587	128680587	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccaaagtgcacggcaaaAgatatgcttacaaatttgac	8	8	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128680587	T	T	128680587	4	4	56	1	0	0	0	0	0	1	0	0	5981	64	3	5	1097	5	FLI1	11	128680587	Nonsense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2083201	128680587	6325929	510	62713											
ARHGAP32	9743	broad.mit.edu	37	chr11	128856792	128856792	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaagggcacagctttaaTattaaaatggacaatagcct	7	6	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128856792	C	C	128856792	1	2	56	0	1	0	0	0	0	0	0	0	883	1421	49	5		5	ARHGAP32	11	128856792	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	176205	128856792	6149724	511	62714											
NFRKB	4798	broad.mit.edu	37	chr11	129751595	129751595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaaaagggggaaaaataCtgaccctacaaaaaagagca	9	7	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129751595	A	A	129751595	1	1	56	0	1	0	0	0	0	0	0	0	10479	580	20	3		3	NFRKB	11	129751595	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	894803	129751595	5254921	512	62715											
APLP2	334	broad.mit.edu	37	chr11	129990726	129990726	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagaggtaagagaactcGgggggaaagtcagctgctgt	15	6	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129990726	A	A	129990726	1	1	56	0	1	0	0	0	0	0	0	0	781	1131	39	4		4	APLP2	11	129990726	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	239131	129990726	5015790	513	62716											
NTM	50863	broad.mit.edu	37	chr11	132084641	132084641	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttcccaagggaacttttgCctgagcctgggccaggtgtc	12	11	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132084641	T	T	132084641	1	4	56	0	1	0	0	0	0	0	0	0	10794	754	26	4		4	NTM	11	132084641	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2093915	132084641	2921875	514	62717											
IGSF9B	22997	broad.mit.edu	37	chr11	133800868	133800868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccggcccagccttgcCggccacgtaccgatgacggt	13	18	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133800868	A	A	133800868	1	1	56	0	1	0	0	0	0	0	0	0	7676	667	23	1		1	IGSF9B	11	133800868	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1716227	133800868	1205648	515	62718											
CLSTN3	9746	broad.mit.edu	37	chr12	7289953	7289953	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagttgcccagtcaacttctCtgtgtcccaccatgtggtag	9	13	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7289953	T	T	7289953	1	4	56	0	1	0	0	0	0	0	0	0	3595	928	32	4		4	CLSTN3	12	7289953	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08		7289953	126561942	516	62719											
PRB4	5545	broad.mit.edu	37	chr12	11201408	11201408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtccacacactctcacCcgtggttatcagagcaagat	7	12	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11201408	A	A	11201408	1	1	56	0	1	0	0	0	0	0	0	0	12551	638	22	2		2	PRB4	12	11201408	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3911455	11201408	122650487	517	62720											
GRIN2B	2904	broad.mit.edu	37	chr12	13842391	13842391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccatgcccaatccatcCtccaaaacttccctttcttt	1	17	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13842391	A	A	13842391	1	1	56	0	1	0	0	0	0	0	0	0	6846	696	24	2		2	GRIN2B	12	13842391	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2640983	13842391	120009504	518	62721											
SLCO1C1	53919	broad.mit.edu	37	chr12	20896346	20896346	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatggtagacaccgtaagTgtattttgaagacttttcta	8	5	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20896346	A	A	20896346	1	1	56	0	1	0	0	0	0	0	0	0	14839	1711	59	5		5	SLCO1C1	12	20896346	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	7053955	20896346	112955549	519	62722											
LST-3TM12	338821	broad.mit.edu	37	chr12	21207544	21207544	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctctgtgcagttggactTacctcatattccgtgctggt	9	11	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21207544	G	G	21207544	2	3	56	1	0	0	0	0	0	0	0	1	9153	1741	61	5		5	LST-3TM12	12	21207544	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	311198	21207544	112644351	520	62723											
SLCO1A2	6579	broad.mit.edu	37	chr12	21457542	21457542	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagacatgacattagtgctTtgacgataaagtgtcagtaa	9	5	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21457542	C	C	21457542	1	2	56	0	1	0	0	0	0	0	0	0	14836	1856	64	5		5	SLCO1A2	12	21457542	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	249998	21457542	112394353	521	62724											
SLCO1A2	6579	broad.mit.edu	37	chr12	21471552	21471552	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggtaatatttaaatgaatTatttccaagcatattctaag	6	4	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21471552	A	A	21471552	1	1	56	0	1	0	0	0	0	0	0	0	14836	1769	61	5		5	SLCO1A2	12	21471552	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	14010	21471552	112380343	522	62725											
GYS2	2998	broad.mit.edu	37	chr12	21757474	21757474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagttcttcgacttccCactggggaagcccacccagg	11	14	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21757474	A	A	21757474	3	1	56	1	0	0	0	0	1	0	0	0	6978	595	21	2	2122	2	GYS2	12	21757474	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	285922	21757474	112094421	523	62726											
SOX5	6660	broad.mit.edu	37	chr12	23696396	23696396	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcattcctatttttcagtCtattaagatatctgaaaaga	5	6	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23696396	A	A	23696396	1	1	56	0	1	0	0	0	0	0	0	0	15068	928	32	3		3	SOX5	12	23696396	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1938922	23696396	110155499	524	62727											
SOX5	6660	broad.mit.edu	37	chr12	24538804	24538804	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagcccgggaggtagaggcTgcagtcagctgtgatcatgc	16	9	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24538804	A	A	24538804	1	1	56	0	1	0	0	0	0	0	0	0	15068	1595	55	5		5	SOX5	12	24538804	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	842408	24538804	109313091	525	62728											
ITPR2	3709	broad.mit.edu	37	chr12	26572062	26572062	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgtgatagagaaaggccaTatccaggatgactgctcggt	12	9	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26572062	C	C	26572062	3	2	56	1	0	0	0	0	1	0	0	0	7991	1406	49	5	1107	5	ITPR2	12	26572062	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2033258	26572062	107279833	526	62729											
ITPR2	3709	broad.mit.edu	37	chr12	26636691	26636691	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctccaggttctggttgacCagcgctacattcttctcatt	7	13	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26636691	G	G	26636691	2	3	56	1	0	0	0	0	0	0	0	1	7991	581	21	4		4	ITPR2	12	26636691	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	64629	26636691	107215204	527	62730											
FAR2	55711	broad.mit.edu	37	chr12	29464194	29464194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccaaatgtgtgaaagtgCgtatttcaatattttataga	7	6	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29464194	A	A	29464194	1	1	56	0	1	0	0	0	0	0	0	0	5732	783	27	3		3	FAR2	12	29464194	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2827503	29464194	104387701	528	62731											
DENND5B	160518	broad.mit.edu	37	chr12	31632547	31632547	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtagagaaggatttgcaTctctaaaagaacacaggtaa	10	5	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31632547	C	C	31632547	3	2	56	1	0	0	0	0	1	0	0	0	4477	1435	50	5	3020	5	DENND5B	12	31632547	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2168353	31632547	102219348	529	62732											
PKP2	5318	broad.mit.edu	37	chr12	33022024	33022024	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaggcacagattcagccaGattccaaacctccctcctcc	5	17	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33022024	A	A	33022024	1	1	56	0	1	0	0	0	0	0	0	0	12080	957	33	4		4	PKP2	12	33022024	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1389477	33022024	100829871	530	62733											
SLC2A13	114134	broad.mit.edu	37	chr12	40392250	40392250	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtggagctgcccaaggctgTgggaacccaccttttgcatc	13	12	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40392250	A	A	40392250	1	1	56	0	1	0	0	0	0	0	0	0	14656	1711	59	5		5	SLC2A13	12	40392250	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	7370226	40392250	93459645	531	62734											
DIP2B	57609	broad.mit.edu	37	chr12	51017226	51017226	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacactctcTctctctctctctctctctct	0	20	6	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51017226	A	A	51017226	1	1	56	0	1	0	0	0	0	0	0	0	4568	1566	54	5		5	DIP2B	12	51017226	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	10624976	51017226	82834669	532	62735											
GALNT6	11226	broad.mit.edu	37	chr12	51771258	51771258	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctccactcctctgaaCcacagcctacattctctata	2	18	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51771258	T	T	51771258	1	4	56	0	1	0	0	0	0	0	0	0	6279	522	18	4		4	GALNT6	12	51771258	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	754032	51771258	82080637	533	62736											
LRIG3	121227	broad.mit.edu	37	chr12	59300726	59300726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtagtcattttattccCctgcttaaaaaaaaaaaaaa	3	7	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59300726	A	A	59300726	1	1	56	0	1	0	0	0	0	0	0	0	9033	638	22	2		2	LRIG3	12	59300726	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7529468	59300726	74551169	534	62737											
TMEM5	10329	broad.mit.edu	37	chr12	64198005	64198005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctagcagatagagcccagGgatacagctgaacaccccac	9	13	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64198005	T	T	64198005	1	4	56	0	1	0	0	0	0	0	0	0	16297	1247	43	2		2	TMEM5	12	64198005	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4897279	64198005	69653890	535	62738											
CAND1	55832	broad.mit.edu	37	chr12	67699344	67699344	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaactacagtaaaggcattGacactgattgctgggtcacc	9	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67699344	A	A	67699344	2	1	56	1	0	0	0	0	0	0	0	1	2641	1281	45	4		4	CAND1	12	67699344	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3501339	67699344	66152551	536	62739											
PTPRR	5801	broad.mit.edu	37	chr12	71065710	71065710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctctgatgctggtctctGgtagaagaaggttgctcaca	13	8	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71065710	T	T	71065710	1	4	56	0	1	0	0	0	0	0	0	0	12918	1363	47	2		2	PTPRR	12	71065710	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3366366	71065710	62786185	537	62740											
TRHDE	29953	broad.mit.edu	37	chr12	72680615	72680615	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtggaaacttccgtgtttGaggaagatggatgggttacg	15	5	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72680615	C	C	72680615	3	2	56	1	0	0	0	0	1	0	0	0	16603	1291	45	4	940	4	TRHDE	12	72680615	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1614905	72680615	61171280	538	62741											
TRHDE	29953	broad.mit.edu	37	chr12	73012754	73012754	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttccttggcatgctgCcagccgagctctttatcctc	7	14	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73012754	T	T	73012754	3	4	56	1	0	0	0	0	1	0	0	0	16603	739	26	4	2320	4	TRHDE	12	73012754	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	332139	73012754	60839141	539	62742											
NAV3	89795	broad.mit.edu	37	chr12	78333903	78333903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttgagagtgaatcatccCctttgaaatgagagataagt	9	5	1	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78333903	A	A	78333903	1	1	56	0	1	0	0	0	0	0	0	0	10279	638	22	2		2	NAV3	12	78333903	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5321149	78333903	55517992	540	62743											
PPFIA2	8499	broad.mit.edu	37	chr12	82060473	82060473	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtgcagcacaccagcaTggcacatgtatacatatgta	10	10	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82060473	A	A	82060473	1	1	56	0	1	0	0	0	0	0	0	0	12406	1479	51	5		5	PPFIA2	12	82060473	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	3726570	82060473	51791422	541	62744											
C12orf12	196477	broad.mit.edu	37	chr12	91347827	91347827	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggggcgcgtcgtttccGgaggatctggctggggaggc	20	10	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91347827	A	A	91347827	2	1	56	1	0	0	0	0	0	0	0	1	1689	1103	39	4		4	C12orf12	12	91347827	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9287354	91347827	42504068	542	62745											
LUM	4060	broad.mit.edu	37	chr12	91502777	91502777	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttggcaaatggtttgaatCctaaataaagatgaaacatt	7	4	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91502777	T	T	91502777	1	4	56	0	1	0	0	0	0	0	0	0	9172	869	30	4		4	LUM	12	91502777	5'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	154950	91502777	42349118	543	62746											
PLXNC1	10154	broad.mit.edu	37	chr12	94589145	94589145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctattctccgaattcatGtacctccccactgggagagg	10	12	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94589145	T	T	94589145	1	4	56	0	1	0	0	0	0	0	0	0	12221	1392	48	3		3	PLXNC1	12	94589145	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3086368	94589145	39262750	544	62747											
CCDC41	51134	broad.mit.edu	37	chr12	94817696	94817696	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatatacatgcctgtgctgCtgaggcagagatggcccagt	13	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94817696	T	T	94817696	1	4	56	0	1	0	0	0	0	0	0	0	2840	812	28	4		4	CCDC41	12	94817696	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	228551	94817696	39034199	545	62748											
C12orf63	374467	broad.mit.edu	37	chr12	97060783	97060783	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccattccaaatggagaaattGgccaaaacaagtaaatccaa	6	9	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97060783	C	C	97060783	1	2	56	0	1	0	0	0	0	0	0	0	1719	1363	47	4		4	C12orf63	12	97060783	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2243087	97060783	36791112	546	62749											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100451511	100451511	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggttgggtgggcaacgttCcttaggctttccactgttaa	12	9	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100451511	A	A	100451511	4	1	56	1	0	0	0	0	0	1	0	0	17095	864	30	3	1160	3	UHRF1BP1L	12	100451511	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3390728	100451511	33400384	547	62750											
PAH	5053	broad.mit.edu	37	chr12	103240578	103240578	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctgatttttttccccagAtaacctggcttccaggggag	9	10	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103240578	G	G	103240578	1	3	56	0	1	0	0	0	0	0	0	0	11488	348	12	5		5	PAH	12	103240578	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2789067	103240578	30611317	548	62751											
C12orf42	374470	broad.mit.edu	37	chr12	103691530	103691530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacatcaaaaagcttatcCaccaagatcaagcgggcttc	7	12	2	1	rs146006207		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103691530	A	A	103691530	1	1	56	0	1	0	0	0	0	0	0	0	1701	609	21	2		2	C12orf42	12	103691530	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	450952	103691530	30160365	549	62752											
STAB2	55576	broad.mit.edu	37	chr12	104149122	104149122	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctggctggagaccgggCgggttgcctaccccacagcc	15	15	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104149122	A	A	104149122	2	1	56	1	0	0	0	0	0	0	0	1	15356	759	27	3		3	STAB2	12	104149122	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	457592	104149122	29702773	550	62753											
RFX4	5992	broad.mit.edu	37	chr12	107048233	107048233	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttttaagttatcaaagtActtacttactttggtacttt	4	5	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107048233	T	T	107048233	1	4	56	0	1	0	0	0	0	0	0	0	13373	406	14	5		5	RFX4	12	107048233	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2899111	107048233	26803662	551	62754											
RPH3A	22895	broad.mit.edu	37	chr12	113216715	113216715	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaattaggcatggacatgTgctaactcctggagtatagg	11	6	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113216715	A	A	113216715	1	1	56	0	1	0	0	0	0	0	0	0	13662	1711	59	5		5	RPH3A	12	113216715	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	6168482	113216715	20635180	552	62755											
KSR2	283455	broad.mit.edu	37	chr12	118068541	118068541	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaaattggcagagggtaGggacgcaaggttctctggga	16	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118068541	A	A	118068541	1	1	56	0	1	0	0	0	0	0	0	0	8654	1015	35	4		4	KSR2	12	118068541	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4851826	118068541	15783354	553	62756											
SRRM4	84530	broad.mit.edu	37	chr12	119538565	119538565	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagctttgttgtcagacagcAgacagggcagcattcctcag	11	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119538565	T	T	119538565	1	4	56	0	1	0	0	0	0	0	0	0	15289	203	7	5		5	SRRM4	12	119538565	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1470024	119538565	14313330	554	62757											
SPPL3	121665	broad.mit.edu	37	chr12	121229395	121229395	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagttaagttgtagttTtgcttacaaaagaaggtcag	10	3	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121229395	C	C	121229395	1	2	56	0	1	0	0	0	0	0	0	0	15208	1856	64	5		5	SPPL3	12	121229395	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1690830	121229395	12622500	555	62758											
GJB6	10804	broad.mit.edu	37	chr13	20797249	20797249	+	Frame_Shift_Del	DEL	T	-	-													acccctctatccgaaccttcTgctttttaatgtcctctatg							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20797249	-	-	20797249	7	5	56	1	0	1	0	1	0	0	0	0	6476	1580	55	0	418	0	GJB6	13	20797249	Frame_Shift_Del	DEL	T	TCGA-17-Z025-01A-01W-0746-08		20797249	94372629	556	62759											
CENPJ	55835	broad.mit.edu	37	chr13	25459510	25459511	+	Missense_Mutation	DNP	CC	AA	AA													ttcagtggttcaagtggctcCctgggagaggcagcctgtaa							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	25459511	AA	AA	25459510	3	1	56	1	0	0	0	0	1	0	0	0	3264	622	22	2	655	2	CENPJ	13	25459510	Missense_Mutation	DNP	CC	TCGA-17-Z025-01A-01W-0746-08	4662261	25459510	89710368	557	62760											
FLT1	2321	broad.mit.edu	37	chr13	28895700	28895700	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagataaaagaatgtttctcGctgccaggtcccgatgaatg	10	9	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28895700	C	C	28895700	3	2	56	1	0	0	0	0	1	0	0	0	5999	1087	38	4	974	4	FLT1	13	28895700	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3436190	28895700	86274178	558	62761											
MTUS2	23281	broad.mit.edu	37	chr13	29841810	29841810	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgggattctctatgaccaTgtgggaatcacatgggttca	12	8	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29841810	A	A	29841810	1	1	56	0	1	0	0	0	0	0	0	0	10060	1479	51	5		5	MTUS2	13	29841810	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	946110	29841810	85328068	559	62762											
BRCA2	675	broad.mit.edu	37	chr13	32912687	32912687	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgaaagctcaagaagcaTgtcatggtaatacttcaaat	8	7	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32912687	C	C	32912687	3	2	56	1	0	0	0	0	1	0	0	0	1508	1464	51	5	4233	5	BRCA2	13	32912687	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	3070877	32912687	82257191	560	62763											
STARD13	90627	broad.mit.edu	37	chr13	33838512	33838512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacttccatggagctcaacCactaattgcccaaacaatgt	5	13	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33838512	A	A	33838512	1	1	56	0	1	0	0	0	0	0	0	0	15374	609	21	2		2	STARD13	13	33838512	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	925825	33838512	81331366	561	62764											
CCNA1	8900	broad.mit.edu	37	chr13	37016255	37016255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcaaattggttatcttcGgatatctaatataaagttat	5	4	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37016255	T	T	37016255	1	4	56	0	1	0	0	0	0	0	0	0	2939	1131	39	1		1	CCNA1	13	37016255	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3177743	37016255	78153623	562	62765											
TRPC4	7223	broad.mit.edu	37	chr13	38396057	38396057	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaaagatttcgtgatgaAgatgccaaaagcaattacaa	9	6	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38396057	T	T	38396057	1	4	56	0	1	0	0	0	0	0	0	0	16705	87	3	5		5	TRPC4	13	38396057	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1379802	38396057	76773821	563	62766											
EPSTI1	94240	broad.mit.edu	37	chr13	43565988	43565988	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttaagcaaatgagctTtcattcagtcaaaatccctg	5	9	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43565988	G	G	43565988	1	3	56	0	1	0	0	0	0	0	0	0	5240	1856	64	5		5	EPSTI1	13	43565988	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	5169931	43565988	71603890	564	62767											
CCDC122	160857	broad.mit.edu	37	chr13	44430575	44430575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagatcaagaccatcctgGctaacatggtgaaaccccgt	10	11	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44430575	T	T	44430575	1	4	56	0	1	0	0	0	0	0	0	0	2784	1218	42	3		3	CCDC122	13	44430575	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	864587	44430575	70739303	565	62768											
C13orf18	80183	broad.mit.edu	37	chr13	46919590	46919590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaccctcacctcacagcCagccacatgtgcaagggaag	10	15	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46919590	A	A	46919590	3	1	56	1	0	0	0	0	1	0	0	0	1733	594	21	2	223	2	C13orf18	13	46919590	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2489015	46919590	68250288	566	62769											
NEK5	341676	broad.mit.edu	37	chr13	52667205	52667205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaccattgacttggggatGgaccatgcctcgtttcctga	10	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52667205	T	T	52667205	3	4	56	1	0	0	0	0	1	0	0	0	10422	1348	47	2	973	2	NEK5	13	52667205	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5747615	52667205	62502673	567	62770											
NEK3	4752	broad.mit.edu	37	chr13	52710350	52710350	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcccactgtcgtctaTgaagatttggtgaactggct	9	9	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52710350	C	C	52710350	3	2	56	1	0	0	0	0	1	0	0	0	10420	1464	51	5	460	5	NEK3	13	52710350	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	43145	52710350	62459528	568	62771											
THSD1	55901	broad.mit.edu	37	chr13	52971719	52971719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtaatgactgagtctcgCccaagcagcttcagcaccac	10	13	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52971719	A	A	52971719	2	1	56	1	0	0	0	0	0	0	0	1	16000	726	26	3		3	THSD1	13	52971719	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	261369	52971719	62198159	569	62772											
PCDH17	27253	broad.mit.edu	37	chr13	58207420	58207420	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccggtcttcgaggcgccatCctacttggtggaactgcccg	12	15	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207420	T	T	58207420	3	4	56	1	0	0	0	0	1	0	0	0	11606	855	30	4	742	4	PCDH17	13	58207420	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5235701	58207420	56962458	570	62773											
DCT	1638	broad.mit.edu	37	chr13	95120979	95120979	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacctgtaataatatacctTcagccaaggaaaaaacccac	4	11	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95120979	C	C	95120979	1	2	56	0	1	0	0	0	0	0	0	0	4337	1798	62	5		5	DCT	13	95120979	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	36913559	95120979	20048899	571	62774											
OR4K13	390433	broad.mit.edu	37	chr14	20502530	20502530	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgatggtcatgtaatggaGgggtttgcatatggcaacat	13	5	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20502530	A	A	20502530	3	1	56	1	0	0	0	0	1	0	0	0	11162	1000	35	4	528	4	OR4K13	14	20502530	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08		20502530	86847010	572	62775											
CDH24	64403	broad.mit.edu	37	chr14	23523666	23523666	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtttctccagacactgtaGgggtggggtgatcaaaggat	15	6	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23523666	C	C	23523666	1	2	56	0	1	0	0	0	0	0	0	0	3139	1015	35	4		4	CDH24	14	23523666	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3021136	23523666	83825874	573	62776											
MYH6	4624	broad.mit.edu	37	chr14	23853924	23853924	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcctctgccatcatggcGgcctgtgtgcaggagagagg	15	11	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23853924	T	T	23853924	2	4	56	1	0	0	0	0	0	0	0	1	10132	1103	39	1		1	MYH6	14	23853924	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	330258	23853924	83495616	574	62777											
NOVA1	4857	broad.mit.edu	37	chr14	27006965	27006965	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaataaataagttcagacaGtgataagtgctgtgaagacc	10	5	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27006965	C	C	27006965	1	2	56	0	1	0	0	0	0	0	0	0	10649	1044	36	4		4	NOVA1	14	27006965	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3153041	27006965	80342575	575	62778											
RALGAPA1	253959	broad.mit.edu	37	chr14	36207850	36207850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcagcagtattggtccCattttcctgaagcaaaatat	7	8	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36207850	A	A	36207850	3	1	56	1	0	0	0	0	1	0	0	0	13121	594	21	2	4923	2	RALGAPA1	14	36207850	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	9200885	36207850	71141690	576	62779											
RALGAPA1	253959	broad.mit.edu	37	chr14	36219737	36219737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatcccaggaatatgaggtCctgtatgtggttttggctcc	11	10	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36219737	A	A	36219737	3	1	56	1	0	0	0	0	1	0	0	0	13121	855	30	3	5429	3	RALGAPA1	14	36219737	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	11887	36219737	71129803	577	62780											
NIN	51199	broad.mit.edu	37	chr14	51243814	51243814	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggggaggggaagatccactCtgtgaagcattcaagtcatc	13	8	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51243814	A	A	51243814	3	1	56	1	0	0	0	0	1	0	0	0	10512	912	32	3	6130	3	NIN	14	51243814	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	15024077	51243814	56105726	578	62781											
FRMD6	122786	broad.mit.edu	37	chr14	52043524	52043524	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatcttgtctggcacgttGcataaatgttgtatggaaga	11	7	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52043524	C	C	52043524	1	2	56	0	1	0	0	0	0	0	0	0	6114	1334	46	4		4	FRMD6	14	52043524	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	799710	52043524	55306016	579	62782											
DDHD1	80821	broad.mit.edu	37	chr14	53581142	53581142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaagtgggtccctaaccCccatacctcctgactgggag	9	16	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53581142	A	A	53581142	1	1	56	0	1	0	0	0	0	0	0	0	4359	638	22	2		2	DDHD1	14	53581142	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1537618	53581142	53768398	580	62783											
RHOJ	57381	broad.mit.edu	37	chr14	63735905	63735905	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtacatttttattatcttGattcattggagggcggtggt	12	4	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63735905	T	T	63735905	1	4	56	0	1	0	0	0	0	0	0	0	13450	1305	45	3		3	RHOJ	14	63735905	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10154763	63735905	43613635	581	62784											
SIPA1L1	26037	broad.mit.edu	37	chr14	72190349	72190349	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagatacacatgtctttgcCctgcttctcctcagtaccat	6	13	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72190349	T	T	72190349	1	4	56	0	1	0	0	0	0	0	0	0	14442	638	22	4		4	SIPA1L1	14	72190349	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8454444	72190349	35159191	582	62785											
NRXN3	9369	broad.mit.edu	37	chr14	78687935	78687935	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaactggatgatacgcaaTagtaagccttgatttagctt	8	6	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78687935	C	C	78687935	1	2	56	0	1	0	0	0	0	0	0	0	10762	1421	49	5		5	NRXN3	14	78687935	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	6497586	78687935	28661605	583	62786											
NRXN3	9369	broad.mit.edu	37	chr14	79942991	79942991	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcagagaccatcttacattGataccattactatcactttc	3	11	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79942991	C	C	79942991	1	2	56	0	1	0	0	0	0	0	0	0	10762	1305	45	4		4	NRXN3	14	79942991	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1255056	79942991	27406549	584	62787											
C14orf145	145508	broad.mit.edu	37	chr14	81259422	81259422	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaacatctgcagttgctgTttttccccattctccagttc	5	14	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81259422	A	A	81259422	3	1	56	1	0	0	0	0	1	0	0	0	1762	1722	60	5	2090	5	C14orf145	14	81259422	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1316431	81259422	26090118	585	62788											
TSHR	7253	broad.mit.edu	37	chr14	81450136	81450136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaagctctaggtttgaGctaaactattttgggggtat	12	5	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81450136	T	T	81450136	1	4	56	0	1	0	0	0	0	0	0	0	16747	986	34	3		3	TSHR	14	81450136	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	190714	81450136	25899404	586	62789											
GPR65	8477	broad.mit.edu	37	chr14	88477589	88477589	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaagaagatttgcactcaTggtcagcctgtccatctgga	10	10	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88477589	A	A	88477589	3	1	56	1	0	0	0	0	1	0	0	0	6771	1464	51	5	400	5	GPR65	14	88477589	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	7027453	88477589	18871951	587	62790											
WDR25	79446	broad.mit.edu	37	chr14	100921252	100921252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgagtagagccaggttagCtgcgtgtttttttttttaaa	10	4	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100921252	T	T	100921252	1	4	56	0	1	0	0	0	0	0	0	0	17409	812	28	4		4	WDR25	14	100921252	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	12443663	100921252	6428288	588	62791											
RTL1	388015	broad.mit.edu	37	chr14	101349397	101349397	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccgtctgagcttggctggtCggaagtctcatcatctgctt	11	11	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101349397	T	T	101349397	3	4	56	1	0	0	0	0	1	0	0	0	13835	884	31	4	2351	4	RTL1	14	101349397	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	428145	101349397	6000143	589	62792											
MAGEL2	54551	broad.mit.edu	37	chr15	23890168	23890168	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagggccttgggccctgccAgtcatgaaaggctagcgtgt	14	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23890168	T	T	23890168	3	4	56	1	0	0	0	0	1	0	0	0	9281	188	7	5	1031	5	MAGEL2	15	23890168	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08		23890168	78641224	590	62793											
GABRG3	2567	broad.mit.edu	37	chr15	27586218	27586218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcaaactactgaagaGttagccaggtcagcaactct	7	11	4	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27586218	A	A	27586218	1	1	56	0	1	0	0	0	0	0	0	0	6233	1044	36	4		4	GABRG3	15	27586218	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3696050	27586218	74945174	591	62794											
OTUD7A	161725	broad.mit.edu	37	chr15	31823045	31823045	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactttagaacaggatcccAgaaaaggaaggggccactgg	12	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31823045	G	G	31823045	1	3	56	0	1	0	0	0	0	0	0	0	11412	203	7	5		5	OTUD7A	15	31823045	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	4236827	31823045	70708347	592	62795											
OTUD7A	161725	broad.mit.edu	37	chr15	32060223	32060223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacttcaggaccaaaattgCtattatttcttaataggtca	5	7	3	0	rs147414182	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32060223	A	A	32060223	1	1	56	0	1	0	0	0	0	0	0	0	11412	812	28	3		3	OTUD7A	15	32060223	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	237178	32060223	70471169	593	62796											
SEMA6D	80031	broad.mit.edu	37	chr15	48022736	48022736	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaactcctgctcgaaggaCaggtggtctcttcgtgggga	14	10	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48022736	T	T	48022736	1	4	56	0	1	0	0	0	0	0	0	0	14155	493	17	4		4	SEMA6D	15	48022736	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	15962513	48022736	54508656	594	62797											
SEMA6D	80031	broad.mit.edu	37	chr15	48056282	48056282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtgagagcagaaccccgGcactgcaaagatattctctg	11	10	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48056282	T	T	48056282	1	4	56	0	1	0	0	0	0	0	0	0	14155	1218	42	3		3	SEMA6D	15	48056282	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	33546	48056282	54475110	595	62798											
FBN1	2200	broad.mit.edu	37	chr15	48726890	48726890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatttccacaaggattgcCaacagaacattcatcagtat	5	11	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48726890	A	A	48726890	3	1	56	1	0	0	0	0	1	0	0	0	5759	594	21	2	2150	2	FBN1	15	48726890	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	670608	48726890	53804502	596	62799											
ATP8B4	79895	broad.mit.edu	37	chr15	50223307	50223307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaaatagtcttagctacCaaccatacctatgacagaca	4	11	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50223307	A	A	50223307	1	1	56	0	1	0	0	0	0	0	0	0	1201	609	21	2		2	ATP8B4	15	50223307	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1496417	50223307	52308085	597	62800											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51397204	51397204	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagccagtgctgaccaAgtccctttcccctctgaaga	8	15	1	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51397204	T	T	51397204	3	4	56	1	0	0	0	0	1	0	0	0	16402	72	3	5	720	5	TNFAIP8L3	15	51397204	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1173897	51397204	51134188	598	62801											
WDR72	256764	broad.mit.edu	37	chr15	53961213	53961213	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggagaaggagaaggagAaaagaagaagggaggaaggg	20	0	0	6			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53961213	G	G	53961213	1	3	56	0	1	0	0	0	0	0	0	0	17449	261	9	5		5	WDR72	15	53961213	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	2564009	53961213	48570179	599	62802											
UNC13C	440279	broad.mit.edu	37	chr15	54586337	54586337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcatgtattacattccCatataagtaaaaataaccaa	5	7	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54586337	A	A	54586337	1	1	56	0	1	0	0	0	0	0	0	0	17112	609	21	2		2	UNC13C	15	54586337	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	625124	54586337	47945055	600	62803											
ZNF592	9640	broad.mit.edu	37	chr15	85306520	85306520	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgacctgggagaagcagCcagcctggaagtgaagcctg	17	9	0	3	rs140090499	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85306520	G	G	85306520	1	3	56	0	1	0	0	0	0	0	0	0	18149	754	26	4		4	ZNF592	15	85306520	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	30720183	85306520	17224872	601	62804											
AKAP13	11214	broad.mit.edu	37	chr15	86129055	86129055	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggcccaatgacccaggcgGtaagtggcatcagtaagtct	12	10	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86129055	C	C	86129055	5	2	56	1	0	0	0	0	0	0	1	0	449	1275	44	4	4188	4	AKAP13	15	86129055	Splice_Site	SNP	G	TCGA-17-Z025-01A-01W-0746-08	822535	86129055	16402337	602	62805											
SV2B	9899	broad.mit.edu	37	chr15	91832548	91832548	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctggtgatctgacccacgCagagggctctaatgccatgt	12	11	3	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91832548	T	T	91832548	1	4	56	0	1	0	0	0	0	0	0	0	15536	725	25	4		4	SV2B	15	91832548	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	5703493	91832548	10698844	603	62806											
ARRDC4	91947	broad.mit.edu	37	chr15	98509183	98509183	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtactgtgtgcgggcaGtgttggaacgacccaaggta	14	8	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98509183	C	C	98509183	3	2	56	1	0	0	0	0	1	0	0	0	989	1029	36	4	443	4	ARRDC4	15	98509183	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6676635	98509183	4022209	604	62807											
LRRK1	79705	broad.mit.edu	37	chr15	101554686	101554686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagcgtgtgtggggccacGgtcgagcaggtcctctgaat	15	10	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101554686	A	A	101554686	1	1	56	0	1	0	0	0	0	0	0	0	9119	1131	39	4		4	LRRK1	15	101554686	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3045503	101554686	976706	605	62808											
A2BP1	54715	broad.mit.edu	37	chr16	6390626	6390626	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcactggtgggagtgtaGcagtgaggacaaccagaggt	17	6	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6390626	A	A	6390626	1	1	56	0	1	0	0	0	0	0	0	0	3	986	34	4		4	A2BP1	16	6390626	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08		6390626	83964127	606	62809											
A2BP1	54715	broad.mit.edu	37	chr16	6398909	6398910	+	Intron	DNP	GG	TT	TT													cccaggaaaagcagatttcaGgtgtactatgcttttctggg							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6398910	TT	TT	6398909	1	4	56	0	1	0	0	0	0	0	0	0	3	1015	35	2		2	A2BP1	16	6398909	Intron	DNP	GG	TCGA-17-Z025-01A-01W-0746-08	8283	6398909	83955844	607	62810											
A2BP1	54715	broad.mit.edu	37	chr16	7286875	7286875	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacgcaggatttagttcacCttctctagaatggctgttgt	10	9	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7286875	T	T	7286875	1	4	56	0	1	0	0	0	0	0	0	0	3	696	24	4		4	A2BP1	16	7286875	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	887966	7286875	83067878	608	62811											
PARN	5073	broad.mit.edu	37	chr16	14708510	14708510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggtcgggagttggagaCcagcctggccgacatggaga	17	9	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14708510	A	A	14708510	1	1	56	0	1	0	0	0	0	0	0	0	11547	522	18	3		3	PARN	16	14708510	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7421635	14708510	75646243	609	62812											
SMG1	23049	broad.mit.edu	37	chr16	18887484	18887484	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatttccaattgtagtcaGggcactgaggtcaaatataa	10	7	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18887484	A	A	18887484	2	1	56	1	0	0	0	0	0	0	0	1	14909	991	35	4		4	SMG1	16	18887484	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4178974	18887484	71467269	610	62813											
ACSM5	54988	broad.mit.edu	37	chr16	20429348	20429348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaattctcaataaattgCttctttttttttctgcctgt	3	8	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20429348	A	A	20429348	1	1	56	0	1	0	0	0	0	0	0	0	187	812	28	3		3	ACSM5	16	20429348	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1541864	20429348	69925405	611	62814											
ACSM1	116285	broad.mit.edu	37	chr16	20635229	20635229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcctttattctggtggCagaatgaggagatgtggagg	15	6	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20635229	A	A	20635229	1	1	56	0	1	0	0	0	0	0	0	0	182	725	25	3		3	ACSM1	16	20635229	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	205881	20635229	69719524	612	62815											
DNAH3	55567	broad.mit.edu	37	chr16	21147483	21147483	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctcatgcctgtaatcCtagcactttgggaggctaag	12	10	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21147483	T	T	21147483	1	4	56	0	1	0	0	0	0	0	0	0	4643	696	24	4		4	DNAH3	16	21147483	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	512254	21147483	69207270	613	62816											
PLK1	5347	broad.mit.edu	37	chr16	23700048	23700048	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaagtgggtggactatTcggacaagtacggccttggt	14	8	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23700048	G	G	23700048	3	3	56	1	0	0	0	0	1	0	0	0	12189	1783	62	5	1278	5	PLK1	16	23700048	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2552565	23700048	66654705	614	62817											
ARHGAP17	55114	broad.mit.edu	37	chr16	24953364	24953364	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgctagcaggccgcttcctCtccagggtccccgagtcaga	11	15	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24953364	A	A	24953364	3	1	56	1	0	0	0	0	1	0	0	0	869	912	32	3	1231	3	ARHGAP17	16	24953364	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1253316	24953364	65401389	615	62818											
STX1B	112755	broad.mit.edu	37	chr16	31008351	31008351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgttatattcggtcattacCtccacgaacttccgggacag	9	12	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31008351	A	A	31008351	3	1	56	1	0	0	0	0	1	0	0	0	15462	680	24	2	502	2	STX1B	16	31008351	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6054987	31008351	59346402	616	62819											
FUS	2521	broad.mit.edu	37	chr16	31201808	31201808	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgcgtgttttccaaagaAgtaaatgtcaaggccacact	9	8	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31201808	C	C	31201808	1	2	56	0	1	0	0	0	0	0	0	0	6160	87	3	5		5	FUS	16	31201808	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	193457	31201808	59152945	617	62820											
ITGAM	3684	broad.mit.edu	37	chr16	31342908	31342908	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccctggtctgcggagccGcacgctccctggctgctgtc	12	18	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31342908	C	C	31342908	1	2	56	0	1	0	0	0	0	0	0	0	7957	1102	38	4		4	ITGAM	16	31342908	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	141100	31342908	59011845	618	62821											
NOD2	64127	broad.mit.edu	37	chr16	50744599	50744599	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagagaatgtcctggaggtCtgggcagatgtgggcatggc	17	7	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50744599	A	A	50744599	2	1	56	1	0	0	0	0	0	0	0	1	10612	900	32	3		3	NOD2	16	50744599	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	19401691	50744599	39610154	619	62822											
SLC6A2	6530	broad.mit.edu	37	chr16	55728470	55728470	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcagtcaatgctacctccTgctggcccagtgctgtgggg	13	12	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55728470	A	A	55728470	1	1	56	0	1	0	0	0	0	0	0	0	14797	1595	55	5		5	SLC6A2	16	55728470	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	4983871	55728470	34626283	620	62823											
BBS2	583	broad.mit.edu	37	chr16	56553553	56553553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaccggttgccgggcaacaCgggctgggggcggggtcgga	21	11	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56553553	A	A	56553553	1	1	56	0	1	0	0	0	0	0	0	0	1343	551	19	3		3	BBS2	16	56553553	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	825083	56553553	33801200	621	62824											
NUP93	9688	broad.mit.edu	37	chr16	56812514	56812514	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagggacatttgggataaAacatctgccacatgtggtgc	13	7	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56812514	C	C	56812514	1	2	56	0	1	0	0	0	0	0	0	0	10867	29	1	5		5	NUP93	16	56812514	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	258961	56812514	33542239	622	62825											
SLC12A3	6559	broad.mit.edu	37	chr16	56903776	56903776	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaaggccctcctctcgtgGgctcctaatcctgggaacag	10	15	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56903776	A	A	56903776	1	1	56	0	1	0	0	0	0	0	0	0	14497	1247	43	4		4	SLC12A3	16	56903776	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	91262	56903776	33450977	623	62826											
CETP	1071	broad.mit.edu	37	chr16	57012021	57012021	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggttgtcggcggcttccccAgccaggcccaagtcaccgtc	12	16	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57012021	C	C	57012021	3	2	56	1	0	0	0	0	1	0	0	0	3307	188	7	5	1042	5	CETP	16	57012021	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	108245	57012021	33342732	624	62827											
FAM192A	80011	broad.mit.edu	37	chr16	57200991	57200991	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagaaatctgagttgtgtGagtgctgactaacctcttat	11	6	2	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57200991	A	A	57200991	1	1	56	0	1	0	0	0	0	0	0	0	5570	1305	45	4		4	FAM192A	16	57200991	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	188970	57200991	33153762	625	62828											
CDH5	1003	broad.mit.edu	37	chr16	66420949	66420949	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtgaacgacaactggcctGtgttcacgcatcggttgttc	11	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66420949	A	A	66420949	3	1	56	1	0	0	0	0	1	0	0	0	3143	1377	48	4	454	4	CDH5	16	66420949	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9219958	66420949	23933804	626	62829											
DUS2L	54920	broad.mit.edu	37	chr16	68088649	68088649	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttctgtttccaggttAagagtgcctggtttccagcc	9	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68088649	G	G	68088649	1	3	56	0	1	0	0	0	0	0	0	0	4846	377	13	5		5	DUS2L	16	68088649	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1667700	68088649	22266104	627	62830											
PMFBP1	83449	broad.mit.edu	37	chr16	72186356	72186356	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatatttaagtgaaggtgttGtggcttccggaaagtgtcct	13	5	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72186356	A	A	72186356	1	1	56	0	1	0	0	0	0	0	0	0	12229	1392	48	4		4	PMFBP1	16	72186356	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4097707	72186356	18168397	628	62831											
ZFHX3	463	broad.mit.edu	37	chr16	72929416	72929416	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactcccactccaactcaCttgcttgtttagaaagcacc	4	15	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72929416	A	A	72929416	1	1	56	0	1	0	0	0	0	0	0	0	17760	580	20	3		3	ZFHX3	16	72929416	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	743060	72929416	17425337	629	62832											
CLEC3A	10143	broad.mit.edu	37	chr16	78061960	78061960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattttattttaatcatacGcttttcatccacctacccca	2	12	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78061960	T	T	78061960	1	4	56	0	1	0	0	0	0	0	0	0	3542	1102	38	3		3	CLEC3A	16	78061960	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5132544	78061960	12292793	630	62833											
WWOX	51741	broad.mit.edu	37	chr16	78570563	78570563	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctgagcatgggattgtgCcggtttagccagctaaagtg	14	7	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78570563	T	T	78570563	1	4	56	0	1	0	0	0	0	0	0	0	17541	754	26	4		4	WWOX	16	78570563	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	508603	78570563	11784190	631	62834											
NXN	64359	broad.mit.edu	37	chr17	819061	819061	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaatgggcggccacttaTggtgtcagagccgaaacttc	11	10	1	1	rs117680068	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	819061	C	C	819061	1	2	56	0	1	0	0	0	0	0	0	0	10882	1479	51	5		5	NXN	17	819061	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08		819061	80376149	632	62835											
OR1A2	26189	broad.mit.edu	37	chr17	3101421	3101421	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagatgatgtacctaggggtCggcgttttctctttgccatt	11	8	1	2	rs150553361	byFrequency	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3101421	T	T	3101421	2	4	56	1	0	0	0	0	0	0	0	1	11044	871	31	4		4	OR1A2	17	3101421	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2282360	3101421	78093789	633	62836											
ITGAE	3682	broad.mit.edu	37	chr17	3649219	3649219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgagaagtgcctcgcggaGgcctgggaatgaagaccaga	16	8	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3649219	T	T	3649219	3	4	56	1	0	0	0	0	1	0	0	0	7955	1000	35	2	1437	2	ITGAE	17	3649219	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	547798	3649219	77545991	634	62837											
PITPNM3	83394	broad.mit.edu	37	chr17	6367062	6367063	+	Missense_Mutation	DNP	CC	AA	AA													tggcactcaccggacaacatCcactgcacccggccggacct							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6367063	AA	AA	6367062	3	1	56	1	0	0	0	0	1	0	0	0	12047	855	30	3	644	3	PITPNM3	17	6367062	Missense_Mutation	DNP	CC	TCGA-17-Z025-01A-01W-0746-08	2717843	6367062	74828148	635	62838											
PITPNM3	83394	broad.mit.edu	37	chr17	6367254	6367254	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagggtcagacgttagccGgaatccagaggtcagcctgt	14	10	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6367254	A	A	6367254	1	1	56	0	1	0	0	0	0	0	0	0	12047	1131	39	4		4	PITPNM3	17	6367254	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	192	6367254	74827956	636	62839											
ACAP1	9744	broad.mit.edu	37	chr17	7240171	7240171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccccagcacacacacacCtttccccaggccaggtctcc	5	22	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7240171	A	A	7240171	1	1	56	0	1	0	0	0	0	0	0	0	118	696	24	2		2	ACAP1	17	7240171	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	872917	7240171	73955039	637	62840											
DNAH2	146754	broad.mit.edu	37	chr17	7660322	7660322	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctcgacatttccctgtGcttcccagcctctccacctg	5	18	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7660322	A	A	7660322	1	1	56	0	1	0	0	0	0	0	0	0	4642	1334	46	4		4	DNAH2	17	7660322	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	420151	7660322	73534888	638	62841											
DNAH2	146754	broad.mit.edu	37	chr17	7667525	7667525	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacttggccaacgtggagacTcagatccctcccatacacga	9	14	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7667525	C	C	7667525	2	2	56	1	0	0	0	0	0	0	0	1	4642	1538	54	5		5	DNAH2	17	7667525	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	7203	7667525	73527685	639	62842											
MYH4	4622	broad.mit.edu	37	chr17	10350502	10350502	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttaaggtcatcttggcctCtgatggcatcatccaaatgt	8	11	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10350502	A	A	10350502	3	1	56	1	0	0	0	0	1	0	0	0	10131	913	32	3	846	3	MYH4	17	10350502	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2682977	10350502	70844708	640	62843											
MYH3	4621	broad.mit.edu	37	chr17	10538233	10538233	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacatcaaccatcagatccTccacctctccttgcagcctc	3	19	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10538233	C	C	10538233	3	2	56	1	0	0	0	0	1	0	0	0	10130	1551	54	5	1586	5	MYH3	17	10538233	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	187731	10538233	70656977	641	62844											
ULK2	9706	broad.mit.edu	37	chr17	19705198	19705198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcccggccggaggaagcCcatggggctggtgttggacc	17	11	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19705198	A	A	19705198	3	1	56	1	0	0	0	0	1	0	0	0	17102	623	22	2	1825	2	ULK2	17	19705198	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	9166965	19705198	61490012	642	62845											
MAP2K3	5606	broad.mit.edu	37	chr17	21208499	21208499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgggtggagccgtgcCtggggccctgagcttttggg	21	8	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21208499	A	A	21208499	1	1	56	0	1	0	0	0	0	0	0	0	9330	696	24	2		2	MAP2K3	17	21208499	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1503301	21208499	59986711	643	62846											
ACCN1	40	broad.mit.edu	37	chr17	31517872	31517872	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaagatgcagagcatttaGaacttttgcacatgctgcca	11	8	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31517872	A	A	31517872	1	1	56	0	1	0	0	0	0	0	0	0	128	957	33	4		4	ACCN1	17	31517872	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10309373	31517872	49677338	644	62847											
ACCN1	40	broad.mit.edu	37	chr17	31716288	31716288	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcctggctctctcccacTcttaactgcacgcaaacaga	7	16	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31716288	A	A	31716288	1	1	56	0	1	0	0	0	0	0	0	0	128	1566	54	5		5	ACCN1	17	31716288	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	198416	31716288	49478922	645	62848											
ACCN1	40	broad.mit.edu	37	chr17	32074562	32074562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccttcccacactttacctGgacctggagatccgttgttt	7	13	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32074562	T	T	32074562	1	4	56	0	1	0	0	0	0	0	0	0	128	1363	47	2		2	ACCN1	17	32074562	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	358274	32074562	49120648	646	62849											
ACCN1	40	broad.mit.edu	37	chr17	32410739	32410739	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgattgccattctaactGgtgtaagatgatatcccatt	7	7	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32410739	A	A	32410739	1	1	56	0	1	0	0	0	0	0	0	0	128	1363	47	4		4	ACCN1	17	32410739	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	336177	32410739	48784471	647	62850											
PSMB3	5691	broad.mit.edu	37	chr17	36908933	36908933	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactggtgaccgacagggacGtgtgaccaatagaaagccca	12	10	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36908933	A	A	36908933	1	1	56	0	1	0	0	0	0	0	0	0	12784	1160	40	4		4	PSMB3	17	36908933	5'Flank	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4498194	36908933	44286277	648	62851											
NEUROD2	4761	broad.mit.edu	37	chr17	37762594	37762594	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtccttcttcctcctcctCttcctcctcctcctctcccc	1	24	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37762594	G	G	37762594	3	3	56	1	0	0	0	0	1	0	0	0	10444	922	32	4	893	4	NEUROD2	17	37762594	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	853661	37762594	43432616	649	62852											
MED24	9862	broad.mit.edu	37	chr17	38188962	38188962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgggagactcaatgagCcccacgaagcaagctttcca	9	15	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38188962	A	A	38188962	2	1	56	1	0	0	0	0	0	0	0	1	9535	726	26	3		3	MED24	17	38188962	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	426368	38188962	43006248	650	62853											
HAP1	9001	broad.mit.edu	37	chr17	39881467	39881467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaccccccaggcccaccCccacccgtctccacacagat	4	24	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39881467	A	A	39881467	1	1	56	0	1	0	0	0	0	0	0	0	7019	638	22	2		2	HAP1	17	39881467	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1692505	39881467	41313743	651	62854											
KCNH4	23415	broad.mit.edu	37	chr17	40321504	40321504	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggctacctcgttggcGtcgatgccgctgttgacggc	14	13	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40321504	A	A	40321504	2	1	56	1	0	0	0	0	0	0	0	1	8104	1136	40	4		4	KCNH4	17	40321504	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	440037	40321504	40873706	652	62855											
CA10	56934	broad.mit.edu	37	chr17	49984197	49984197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaatgtccaatccatctgCatgtcctgcttgccctacgt	6	15	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49984197	A	A	49984197	1	1	56	0	1	0	0	0	0	0	0	0	2537	725	25	3		3	CA10	17	49984197	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	9662693	49984197	31211013	653	62856											
KIF2B	84643	broad.mit.edu	37	chr17	51902048	51902048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagatgtaaggccctaccatCgtggccactatccgattgga	10	11	0	1	rs114241810	byFrequency;by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51902048	A	A	51902048	3	1	56	1	0	0	0	0	1	0	0	0	8368	884	31	3	1656	3	KIF2B	17	51902048	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1917851	51902048	29293162	654	62857											
ANKFN1	162282	broad.mit.edu	37	chr17	54434779	54434779	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgccagggactcaggcccgGatctgtaggatgccaacacc	12	13	2	0	rs146322257	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54434779	T	T	54434779	1	4	56	0	1	0	0	0	0	0	0	0	625	1189	41	3		3	ANKFN1	17	54434779	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2532731	54434779	26760431	655	62858											
TEX14	56155	broad.mit.edu	37	chr17	56638913	56638913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggaaggtcttgtagctcCacgctctcctcaggtggctg	13	11	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56638913	A	A	56638913	2	1	56	1	0	0	0	0	0	0	0	1	15900	581	21	2		2	TEX14	17	56638913	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2204134	56638913	24556297	656	62859											
DHX40	79665	broad.mit.edu	37	chr17	57647932	57647932	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccacgaaaagtagctgctAtatcagttgctcagagagta	9	8	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57647932	G	G	57647932	3	3	56	1	0	0	0	0	1	0	0	0	4552	449	16	5	344	5	DHX40	17	57647932	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1009019	57647932	23547278	657	62860											
CCDC46	201134	broad.mit.edu	37	chr17	64171266	64171266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccagctcacccagtacCcaggctggtaatccctctgg	9	16	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64171266	A	A	64171266	3	1	56	1	0	0	0	0	1	0	0	0	2845	624	22	2	2763	2	CCDC46	17	64171266	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6523334	64171266	17023944	658	62861											
ABCA8	10351	broad.mit.edu	37	chr17	66921153	66921153	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaatgcacgttttgacacaTgtagcttcataaggaaaaaa	8	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66921153	C	C	66921153	1	2	56	0	1	0	0	0	0	0	0	0	38	1479	51	5		5	ABCA8	17	66921153	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2749887	66921153	14274057	659	62862											
ABCA6	23460	broad.mit.edu	37	chr17	67102404	67102404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataatattaatgccatccTggaggcatcacagattttcc	6	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67102404	C	C	67102404	1	2	56	0	1	0	0	0	0	0	0	0	36	1595	55	5		5	ABCA6	17	67102404	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	181251	67102404	14092806	660	62863											
MGAT5B	146664	broad.mit.edu	37	chr17	74936669	74936669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccgatcaggaggggcCgggacagagacccctgcagg	17	13	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74936669	A	A	74936669	1	1	56	0	1	0	0	0	0	0	0	0	9642	667	23	1		1	MGAT5B	17	74936669	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	7834265	74936669	6258541	661	62864											
EMILIN2	84034	broad.mit.edu	37	chr18	2891408	2891408	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agccaccagaatgctgaatgGaagactggacaatgagtttg	12	7	0	4			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2891408	C	C	2891408	3	2	56	1	0	0	0	0	1	0	0	0	5136	1174	41	4	1297	4	EMILIN2	18	2891408	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08		2891408	75185840	662	62865											
DTNA	1837	broad.mit.edu	37	chr18	32391955	32391955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttctgactccagtgggGtgatggtttatggacgatat	13	5	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32391955	T	T	32391955	3	4	56	1	0	0	0	0	1	0	0	0	4828	1261	44	3	499	3	DTNA	18	32391955	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	29500547	32391955	45685293	663	62866											
DTNA	1837	broad.mit.edu	37	chr18	32455178	32455178	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattttcttgggaaagcaaaTtaatgacctgcattgtctct	7	8	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32455178	A	A	32455178	1	1	56	0	1	0	0	0	0	0	0	0	4828	1508	52	5		5	DTNA	18	32455178	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	63223	32455178	45622070	664	62867											
ELP2	55250	broad.mit.edu	37	chr18	33718924	33718924	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaatgtattgggtcttAattttgtatctgaatgtttc	8	3	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33718924	T	T	33718924	1	4	56	0	1	0	0	0	0	0	0	0	5122	377	13	5		5	ELP2	18	33718924	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1263746	33718924	44358324	665	62868											
FHOD3	80206	broad.mit.edu	37	chr18	34280963	34280963	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggatgcagggcttacctcaCtgtccatgtgataagttgct	12	9	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34280963	G	G	34280963	1	3	56	0	1	0	0	0	0	0	0	0	5940	580	20	4		4	FHOD3	18	34280963	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	562039	34280963	43796285	666	62869											
PIK3C3	5289	broad.mit.edu	37	chr18	39623730	39623730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatgcaccaagtgagaatGggccaaatgggattagtgct	12	6	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39623730	T	T	39623730	3	4	56	1	0	0	0	0	1	0	0	0	12007	1348	47	2	2215	2	PIK3C3	18	39623730	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5342767	39623730	38453518	667	62870											
RIT2	6014	broad.mit.edu	37	chr18	40411755	40411755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgactattgtctctccCccactccctagtatcaaaca	4	14	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40411755	A	A	40411755	1	1	56	0	1	0	0	0	0	0	0	0	13498	638	22	2		2	RIT2	18	40411755	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	788025	40411755	37665493	668	62871											
SLC14A2	8170	broad.mit.edu	37	chr18	42940276	42940276	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctgggcctacgacacatCcctcctcaaagaaaaacaga	6	13	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42940276	A	A	42940276	1	1	56	0	1	0	0	0	0	0	0	0	14510	870	30	3		3	SLC14A2	18	42940276	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2528521	42940276	35136972	669	62872											
SLC14A2	8170	broad.mit.edu	37	chr18	43204647	43204647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgtctgacccccacagCagtcctctcctgccagagcc	9	17	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43204647	A	A	43204647	3	1	56	1	0	0	0	0	1	0	0	0	14510	709	25	3	20	3	SLC14A2	18	43204647	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	264371	43204647	34872601	670	62873											
DYM	54808	broad.mit.edu	37	chr18	46784713	46784713	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatcgtcttaattgtactgTatgcaaaaaagatagaatag	7	5	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46784713	C	C	46784713	1	2	56	0	1	0	0	0	0	0	0	0	4880	1653	57	5		5	DYM	18	46784713	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	3580066	46784713	31292535	671	62874											
NEDD4L	23327	broad.mit.edu	37	chr18	55839416	55839416	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccatccttccatagaggaGaggtacaggtggcaaggcag	15	9	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55839416	T	T	55839416	1	4	56	0	1	0	0	0	0	0	0	0	10406	957	33	3		3	NEDD4L	18	55839416	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	9054703	55839416	22237832	672	62875											
NEDD4L	23327	broad.mit.edu	37	chr18	55958349	55958349	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacagagaaccaggccgaccGacccacgtggtcacacagag	11	15	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55958349	A	A	55958349	1	1	56	0	1	0	0	0	0	0	0	0	10406	1073	37	4		4	NEDD4L	18	55958349	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	118933	55958349	22118899	673	62876											
ALPK2	115701	broad.mit.edu	37	chr18	56287185	56287185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgggtagacaaaatgtgGcatagcaatacaattgaata	10	4	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56287185	T	T	56287185	1	4	56	0	1	0	0	0	0	0	0	0	545	1218	42	3		3	ALPK2	18	56287185	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	328836	56287185	21790063	674	62877											
CPLX4	339302	broad.mit.edu	37	chr18	56963928	56963928	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccctccacccctcccaccCctcacatcacggaacacttc	2	24	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56963928	T	T	56963928	1	4	56	0	1	0	0	0	0	0	0	0	3839	638	22	4		4	CPLX4	18	56963928	3'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	676743	56963928	21113320	675	62878											
DOK6	220164	broad.mit.edu	37	chr18	67490757	67490757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actatgtgtagtttctaagaGggccattagagcagagggtg	14	5	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67490757	A	A	67490757	1	1	56	0	1	0	0	0	0	0	0	0	4741	1015	35	4		4	DOK6	18	67490757	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	10526829	67490757	10586491	676	62879											
NETO1	81832	broad.mit.edu	37	chr18	70531933	70531933	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagagatatttttgcgcatGatctccagatcaattttgta	7	7	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70531933	C	C	70531933	1	2	56	0	1	0	0	0	0	0	0	0	10434	1305	45	4		4	NETO1	18	70531933	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3041176	70531933	7545315	677	62880											
UQCR11	10975	broad.mit.edu	37	chr19	1599339	1599339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgccccggctctgggagCctggagaacccactcttcgg	13	16	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1599339	A	A	1599339	1	1	56	0	1	0	0	0	0	0	0	0	17143	754	26	3		3	UQCR11	19	1599339	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08		1599339	57529644	678	62881											
THOP1	7064	broad.mit.edu	37	chr19	2790328	2790328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctggatgagaagcggGtgatcccttcctttccctct	9	13	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2790328	T	T	2790328	1	4	56	0	1	0	0	0	0	0	0	0	15994	1276	44	3		3	THOP1	19	2790328	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1190989	2790328	56338655	679	62882											
ZNRF4	148066	broad.mit.edu	37	chr19	5456479	5456479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaccaactcaagatcctgcCctgctcccacacctaccact	4	20	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5456479	A	A	5456479	3	1	56	1	0	0	0	0	1	0	0	0	18343	623	22	2	979	2	ZNRF4	19	5456479	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2666151	5456479	53672504	680	62883											
RANBP3	8498	broad.mit.edu	37	chr19	5928017	5928017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgcccaaatacaaaggCttgctgtgtggcggggtctt	13	9	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5928017	A	A	5928017	3	1	56	1	0	0	0	0	1	0	0	0	13137	797	28	3	964	3	RANBP3	19	5928017	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	471538	5928017	53200966	681	62884											
C19orf45	374877	broad.mit.edu	37	chr19	7570505	7570505	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccttcatgcagtacttctAcggccaggtgagcaggaaga	11	11	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7570505	G	G	7570505	3	3	56	1	0	0	0	0	1	0	0	0	1947	391	14	5	1016	5	C19orf45	19	7570505	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1642488	7570505	51558478	682	62885											
EVI5L	115704	broad.mit.edu	37	chr19	7912614	7912614	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtcggcccttcctgcCcaggctcctggaggccgact	11	18	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7912614	T	T	7912614	1	4	56	0	1	0	0	0	0	0	0	0	5332	638	22	4		4	EVI5L	19	7912614	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	342109	7912614	51216369	683	62886											
MUC16	94025	broad.mit.edu	37	chr19	9058462	9058462	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataacctgtttgggtggtgaTggttatttctgcagattctg	12	5	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9058462	A	A	9058462	3	1	56	1	0	0	0	0	1	0	0	0	10067	1464	51	5	14867	5	MUC16	19	9058462	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1145848	9058462	50070521	684	62887											
COL5A3	50509	broad.mit.edu	37	chr19	10106290	10106290	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtccctgcaggcctcgggGaccctagaagaaagcaaaaa	12	11	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10106290	A	A	10106290	3	1	56	1	0	0	0	0	1	0	0	0	3730	1174	41	4	3908	4	COL5A3	19	10106290	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1047828	10106290	49022693	685	62888											
CACNA1A	773	broad.mit.edu	37	chr19	13395964	13395964	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccacggtcgtcttcctcctCctccttcttctcttcctctt	3	20	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13395964	A	A	13395964	4	1	56	1	0	0	0	0	0	1	0	0	2564	864	30	3	4120	3	CACNA1A	19	13395964	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3289674	13395964	45733019	686	62889											
OR7C2	26658	broad.mit.edu	37	chr19	15052159	15052159	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taacttgtcggcaaagaaatCcaataattagccaaaatgca	6	8	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15052159	A	A	15052159	1	1	56	0	1	0	0	0	0	0	0	0	11312	870	30	3		3	OR7C2	19	15052159	5'Flank	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1656195	15052159	44076824	687	62890											
UNC13A	23025	broad.mit.edu	37	chr19	17779067	17779067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcctccatcctccaggcCtactgagctccacccgggcc	8	20	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17779067	A	A	17779067	1	1	56	0	1	0	0	0	0	0	0	0	17110	696	24	2		2	UNC13A	19	17779067	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2726908	17779067	41349916	688	62891											
IL12RB1	3594	broad.mit.edu	37	chr19	18179326	18179326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccagactctcgactccaGctgtaggttgctggaaggat	12	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18179326	T	T	18179326	3	4	56	1	0	0	0	0	1	0	0	0	7696	962	34	3	816	3	IL12RB1	19	18179326	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	400259	18179326	40949657	689	62892											
ZNF90	7643	broad.mit.edu	37	chr19	20215248	20215248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttttttgtggaatgatttTtagtaatgtattgtttgcat	9	1	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20215248	C	C	20215248	1	2	56	0	1	0	0	0	0	0	0	0	18328	1856	64	5		5	ZNF90	19	20215248	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	2035922	20215248	38913735	690	62893											
ZNF676	163223	broad.mit.edu	37	chr19	22363036	22363036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtatgaattatcttatGtttagtaaggattgagaacg	9	4	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22363036	T	T	22363036	3	4	56	1	0	0	0	0	1	0	0	0	18210	1377	48	3	287	3	ZNF676	19	22363036	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2147788	22363036	36765947	691	62894											
ZNF98	148198	broad.mit.edu	37	chr19	22574939	22574940	+	Missense_Mutation	DNP	AG	TT	TT													gaatgaattctcttatgtgtAgtaaggtgggataaccggct							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22574940	TT	TT	22574939	3	4	56	1	0	0	0	0	1	0	0	0	18332	407	15	5	624	5	ZNF98	19	22574939	Missense_Mutation	DNP	AG	TCGA-17-Z025-01A-01W-0746-08	211903	22574939	36554044	692	62895											
ZNF99	7652	broad.mit.edu	37	chr19	22939802	22939802	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttatgtttcctaagggcTgagaaattgctaaaagcttt	8	6	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22939802	A	A	22939802	2	1	56	1	0	0	0	0	0	0	0	1	18333	1567	55	5		5	ZNF99	19	22939802	Silent	SNP	T	TCGA-17-Z025-01A-01W-0746-08	364863	22939802	36189181	693	62896											
ZNF91	7644	broad.mit.edu	37	chr19	23542621	23542621	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tataaatgctttgccacattCttcacacttgtaaggtttct	5	9	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23542621	A	A	23542621	4	1	56	1	0	0	0	0	0	1	0	0	18329	922	32	3	419	3	ZNF91	19	23542621	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	602819	23542621	35586362	694	62897											
C19orf2	8725	broad.mit.edu	37	chr19	30414693	30414693	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgacagtgttatagcttcTctgctgttagtgtgaggttt	11	6	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30414693	C	C	30414693	1	2	56	0	1	0	0	0	0	0	0	0	1930	1566	54	5		5	C19orf2	19	30414693	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	6872072	30414693	28714290	695	62898											
ZNF536	9745	broad.mit.edu	37	chr19	31025865	31025865	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactgtgggaaaactttccGgacatcccatcaccttaagg	9	11	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31025865	A	A	31025865	3	1	56	1	0	0	0	0	1	0	0	0	18101	1116	39	4	2288	4	ZNF536	19	31025865	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	611172	31025865	28103118	696	62899											
PEPD	5184	broad.mit.edu	37	chr19	34002118	34002118	+	Intron	DEL	C	-	-													acatgaggtgcaaggagggaCcggtggctgcatcacagcac							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34002118	-	-	34002118	6	5	56	0	1	1	0	1	0	0	0	0	11822	522	18	0		0	PEPD	19	34002118	Intron	DEL	C	TCGA-17-Z025-01A-01W-0746-08	2976253	34002118	25126865	697	62900											
FXYD3	5349	broad.mit.edu	37	chr19	35610225	35610225	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggcacagggccagcctcCcggtggctctgctaaggcca	13	15	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35610225	T	T	35610225	1	4	56	0	1	0	0	0	0	0	0	0	6179	638	22	4		4	FXYD3	19	35610225	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1608107	35610225	23518758	698	62901											
FAM187B	148109	broad.mit.edu	37	chr19	35718802	35718802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccctctgcacatattacCaggaaggatcccctgaccgg	8	15	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35718802	A	A	35718802	1	1	56	0	1	0	0	0	0	0	0	0	5559	609	21	2		2	FAM187B	19	35718802	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	108577	35718802	23410181	699	62902											
ZNF260	339324	broad.mit.edu	37	chr19	37005994	37005994	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgagatttctctccagtAtgcattttcttatgctctac	5	10	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37005994	T	T	37005994	3	4	56	1	0	0	0	0	1	0	0	0	17928	446	16	5	1095	5	ZNF260	19	37005994	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1287192	37005994	22122989	700	62903											
ZNF568	374900	broad.mit.edu	37	chr19	37441034	37441034	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctcattgaacatgagcgaAttcacactggagagaaaccc	8	10	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37441034	T	T	37441034	3	4	56	1	0	0	0	0	1	0	0	0	18126	101	4	5	997	5	ZNF568	19	37441034	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	435040	37441034	21687949	701	62904											
RYR1	6261	broad.mit.edu	37	chr19	39052178	39052178	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaccctcagaccccacGggggctgtgcgtgcctcgca	12	18	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39052178	A	A	39052178	1	1	56	0	1	0	0	0	0	0	0	0	13879	1131	39	4		4	RYR1	19	39052178	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1611144	39052178	20076805	702	62905											
HNRNPUL1	11100	broad.mit.edu	37	chr19	41787192	41787192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttgcggtgagtgctagCagcctgtgggagttggcaga	17	7	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41787192	A	A	41787192	1	1	56	0	1	0	0	0	0	0	0	0	7341	725	25	3		3	HNRNPUL1	19	41787192	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2735014	41787192	17341791	703	62906											
CYP2F1	1572	broad.mit.edu	37	chr19	42027911	42027911	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaaattcctgtatcgtatGaacttgctgcattaagaggt	8	7	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42027911	T	T	42027911	1	4	56	0	1	0	0	0	0	0	0	0	4204	1305	45	3		3	CYP2F1	19	42027911	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	240719	42027911	17101072	704	62907											
TMEM145	284339	broad.mit.edu	37	chr19	42827826	42827827	+	Missense_Mutation	DNP	GG	TT	TT													cggagtccctggacccggagGgagccaatccgctgacaagg							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42827827	TT	TT	42827826	3	4	56	1	0	0	0	0	1	0	0	0	16182	1232	43	2	1340	2	TMEM145	19	42827826	Missense_Mutation	DNP	GG	TCGA-17-Z025-01A-01W-0746-08	799915	42827826	16301157	705	62908											
PSG1	5669	broad.mit.edu	37	chr19	43352068	43352068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccagttttgatgtccagGgataaaggtctctgtacttg	12	7	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43352068	T	T	43352068	1	4	56	0	1	0	0	0	0	0	0	0	12759	1247	43	2		2	PSG1	19	43352068	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	524242	43352068	15776915	706	62909											
IRGQ	126298	broad.mit.edu	37	chr19	44096260	44096260	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagcaggacgccgtgaGccgctcggtagcccaggcca	14	16	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44096260	A	A	44096260	3	1	56	1	0	0	0	0	1	0	0	0	7909	971	34	4	85	4	IRGQ	19	44096260	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	744192	44096260	15032723	707	62910											
MARK4	57787	broad.mit.edu	37	chr19	45769480	45769480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccttccccttccctccCagattgtttcggctgtgcac	6	18	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45769480	T	T	45769480	1	4	56	0	1	0	0	0	0	0	0	0	9407	609	21	4		4	MARK4	19	45769480	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1673220	45769480	13359503	708	62911											
EMP3	2014	broad.mit.edu	37	chr19	48830831	48830831	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctctggtacgactgcacGtggaacaacgacaccaaaac	8	12	1	0	rs139549534		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48830831	T	T	48830831	2	4	56	1	0	0	0	0	0	0	0	1	5145	1132	40	3		3	EMP3	19	48830831	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	3061351	48830831	10298152	709	62912											
CGB8	94115	broad.mit.edu	37	chr19	49552054	49552054	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcggggttgtgggggcgGcaaggccaccaggaggttgt	19	9	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49552054	A	A	49552054	1	1	56	0	1	0	0	0	0	0	0	0	3331	1218	42	4		4	CGB8	19	49552054	5'UTR	SNP	G	TCGA-17-Z025-01A-01W-0746-08	721223	49552054	9576929	710	62913											
SIGLEC6	946	broad.mit.edu	37	chr19	52033197	52033197	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagagcctggccctccaGgacagggagggacgaggtgt	17	12	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52033197	C	C	52033197	3	2	56	1	0	0	0	0	1	0	0	0	14425	991	35	4	584	4	SIGLEC6	19	52033197	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2481143	52033197	7095786	711	62914											
ZNF677	342926	broad.mit.edu	37	chr19	53747212	53747212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttattttcacacaaaatGgcagaaaagaggtgtacata	7	6	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53747212	T	T	53747212	1	4	56	0	1	0	0	0	0	0	0	0	18211	1363	47	2		2	ZNF677	19	53747212	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1714015	53747212	5381771	712	62915											
LILRB2	10288	broad.mit.edu	37	chr19	54778643	54778643	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagggtcaagctgtgcagcTgggcgtaggtcacatcctgg	16	9	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54778643	A	A	54778643	3	1	56	1	0	0	0	0	1	0	0	0	8863	1580	55	5	109	5	LILRB2	19	54778643	Missense_Mutation	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1031431	54778643	4350340	713	62916											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272500	55272500	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attacccatttcccagaagcCcatcctggcctcccacccac	4	20	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55272500	G	G	55272500	1	3	56	0	1	0	0	0	0	0	0	0	8388	638	22	4		4	KIR2DL3	19	55272500	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	493857	55272500	3856483	714	62917											
KIR3DL1	3811	broad.mit.edu	37	chr19	55329629	55329629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacgccaagtctatgcaGgatgggtccttcctgtagcc	13	11	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55329629	T	T	55329629	1	4	56	0	1	0	0	0	0	0	0	0	8391	1015	35	2		2	KIR3DL1	19	55329629	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	57129	55329629	3799354	715	62918											
TNNI3	7137	broad.mit.edu	37	chr19	55665443	55665443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgaggtgggcccgcagGtccagggactccttagcccg	15	13	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55665443	T	T	55665443	3	4	56	1	0	0	0	0	1	0	0	0	16451	1252	44	3	136	3	TNNI3	19	55665443	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	335814	55665443	3463540	716	62919											
NLRP8	126205	broad.mit.edu	37	chr19	56491085	56491085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgagtctggagttcagaCcagcctgggcaacattgcaa	12	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56491085	T	T	56491085	1	4	56	0	1	0	0	0	0	0	0	0	10578	522	18	4		4	NLRP8	19	56491085	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	825642	56491085	2637898	717	62920											
C19orf18	147685	broad.mit.edu	37	chr19	58472920	58472920	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagcctgtgccagtcgaCtggagaatgatataaatgaa	10	9	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58472920	A	A	58472920	5	1	56	1	0	0	0	0	0	0	1	0	1929	579	20	3	284	3	C19orf18	19	58472920	Splice_Site	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1981835	58472920	656063	718	62921											
PSMF1	9491	broad.mit.edu	37	chr20	1097853	1097853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactgaatcagagaggtaCagggctggcagggctggggc	19	7	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1097853	T	T	1097853	1	4	56	0	1	0	0	0	0	0	0	0	12816	493	17	4		4	PSMF1	20	1097853	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08		1097853	61927667	719	62922											
SIRPB2	284759	broad.mit.edu	37	chr20	1471924	1471924	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctagaccccacttacctgAggggacaaggaccagtgcca	10	14	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1471924	T	T	1471924	3	4	56	1	0	0	0	0	1	0	0	0	14447	304	11	5	966	5	SIRPB2	20	1471924	Missense_Mutation	SNP	A	TCGA-17-Z025-01A-01W-0746-08	374071	1471924	61553596	720	62923											
TGM3	7053	broad.mit.edu	37	chr20	2298023	2298023	+	Frame_Shift_Del	DEL	G	-	-													gtctttggggattccttcccGggtgatcaccaacttcaact					rs146568830	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2298023	-	-	2298023	7	5	56	1	0	1	0	1	0	0	0	0	15954	1116	39	0	901	0	TGM3	20	2298023	Frame_Shift_Del	DEL	G	TCGA-17-Z025-01A-01W-0746-08	826099	2298023	60727497	721	62924											
SIGLEC1	6614	broad.mit.edu	37	chr20	3682056	3682056	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgagcacttgtactcCccactgtcagtttcctccag	9	14	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3682056	T	T	3682056	2	4	56	1	0	0	0	0	0	0	0	1	14418	610	22	4		4	SIGLEC1	20	3682056	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1384033	3682056	59343464	722	62925											
SLC23A2	9962	broad.mit.edu	37	chr20	4871812	4871812	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggttaggggaggggaggTaggggaagcagaaggccatg	24	3	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4871812	A	A	4871812	1	1	56	0	1	0	0	0	0	0	0	0	14577	1653	57	5		5	SLC23A2	20	4871812	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1189756	4871812	58153708	723	62926											
TASP1	55617	broad.mit.edu	37	chr20	13421541	13421541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcatttgtagcaatgcCtctcaggtaacacaaaaatc	6	10	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13421541	A	A	13421541	1	1	56	0	1	0	0	0	0	0	0	0	15708	696	24	2		2	TASP1	20	13421541	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8549729	13421541	49603979	724	62927											
PYGB	5834	broad.mit.edu	37	chr20	25276279	25276279	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgaagcctacatgcagtgCcaggcacaggtggaccagct	12	11	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25276279	T	T	25276279	2	4	56	1	0	0	0	0	0	0	0	1	12968	747	26	4		4	PYGB	20	25276279	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08	11854738	25276279	37749241	725	62928											
C20orf114	92747	broad.mit.edu	37	chr20	31890881	31890881	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgttcaccctgggcatcGtgagttcagttgtctgcgat	11	10	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31890881	T	T	31890881	5	4	56	1	0	0	0	0	0	0	1	0	2104	1159	40	3	1179	3	C20orf114	20	31890881	Splice_Site	SNP	G	TCGA-17-Z025-01A-01W-0746-08	6614602	31890881	31134639	726	62929											
FAM83C	128876	broad.mit.edu	37	chr20	33874426	33874426	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgacccagggtcagcCgtttctcatccctgaccagg	11	14	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33874426	T	T	33874426	3	4	56	1	0	0	0	0	1	0	0	0	5688	652	23	4	91	4	FAM83C	20	33874426	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1983545	33874426	29151094	727	62930											
FAM83C	128876	broad.mit.edu	37	chr20	33874929	33874929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagatccagctggctgtcGgcctggcttggggacaacct	15	11	0	1	rs114056675	byFrequency;by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33874929	T	T	33874929	2	4	56	1	0	0	0	0	0	0	0	1	5688	1103	39	1		1	FAM83C	20	33874929	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	503	33874929	29150591	728	62931											
KIAA1755	85449	broad.mit.edu	37	chr20	36870263	36870263	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggttgaggggtgccaagtgGaccacaacttcatccctcag	13	11	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36870263	T	T	36870263	2	4	56	1	0	0	0	0	0	0	0	1	8327	1161	41	3		3	KIAA1755	20	36870263	Silent	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2995334	36870263	26155257	729	62932											
FAM83D	81610	broad.mit.edu	37	chr20	37580763	37580763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgagaacattctctttcCtcgaggaactcaatctacag	8	10	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37580763	A	A	37580763	3	1	56	1	0	0	0	0	1	0	0	0	5689	681	24	2	1462	2	FAM83D	20	37580763	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	710500	37580763	25444757	730	62933											
PTPRT	11122	broad.mit.edu	37	chr20	40827614	40827614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttactgctattatttttaaCctgtctctatttatgtccac	3	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40827614	A	A	40827614	1	1	56	0	1	0	0	0	0	0	0	0	12920	522	18	3		3	PTPRT	20	40827614	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3246851	40827614	22197906	731	62934											
SLC12A5	57468	broad.mit.edu	37	chr20	44686312	44686312	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagccctcgccgcgccccCcgccgctgtcaccgtttaca	10	21	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44686312	A	A	44686312	1	1	56	0	1	0	0	0	0	0	0	0	14499	638	22	2		2	SLC12A5	20	44686312	3'UTR	SNP	C	TCGA-17-Z025-01A-01W-0746-08	3858698	44686312	18339208	732	62935											
TSHZ2	128553	broad.mit.edu	37	chr20	51601107	51601107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgggtggccggagcagaCggggagggtgagcagggagg	23	6	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51601107	A	A	51601107	1	1	56	0	1	0	0	0	0	0	0	0	16749	551	19	3		3	TSHZ2	20	51601107	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6914795	51601107	11424413	733	62936											
TSHZ2	128553	broad.mit.edu	37	chr20	51895109	51895109	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcccagtacagaactgccaGactaagtcataattcacagc	6	12	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51895109	T	T	51895109	1	4	56	0	1	0	0	0	0	0	0	0	16749	957	33	3		3	TSHZ2	20	51895109	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	294002	51895109	11130411	734	62937											
PMEPA1	56937	broad.mit.edu	37	chr20	56227579	56227579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggataggtgggctggaagcGgtggaagcgctcccgctggg	20	9	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56227579	A	A	56227579	3	1	56	1	0	0	0	0	1	0	0	0	12227	1116	39	4	473	4	PMEPA1	20	56227579	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	4332470	56227579	6797941	735	62938											
GNAS	2778	broad.mit.edu	37	chr20	57448653	57448653	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactcctttttgtctgtctAgtagcatctctaagcttgca	6	10	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57448653	G	G	57448653	1	3	56	0	1	0	0	0	0	0	0	0	6574	435	15	5		5	GNAS	20	57448653	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1221074	57448653	5576867	736	62939											
CDH4	1002	broad.mit.edu	37	chr20	59959334	59959334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtattaaccatcacagGtggggatattgggaatcaca	10	9	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59959334	T	T	59959334	1	4	56	0	1	0	0	0	0	0	0	0	3142	1276	44	3		3	CDH4	20	59959334	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2510681	59959334	3066186	737	62940											
TPTE	7179	broad.mit.edu	37	chr21	10970051	10970051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggttgctcctttaaattcaCttgtctgtggactagtggat	10	8	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10970051	A	A	10970051	3	1	56	1	0	0	0	0	1	0	0	0	16554	565	20	3	1654	3	TPTE	21	10970051	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08		10970051	37159844	738	62941											
BAGE2	85319	broad.mit.edu	37	chr21	11029709	11029710	+	3'UTR	DNP	CC	AA	AA													ctcactgtattatgggtactCcaagcctcctaagatatggc							TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11029710	AA	AA	11029709	1	1	56	0	1	0	0	0	0	0	0	0	1297	870	30	3		3	BAGE2	21	11029709	3'UTR	DNP	CC	TCGA-17-Z025-01A-01W-0746-08	59658	11029709	37100186	739	62942											
ATP5J	522	broad.mit.edu	37	chr21	27097451	27097451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattcacatgtcaacactgTcattcagttctctaaaaatc	3	10	5	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27097451	A	A	27097451	1	1	56	0	1	0	0	0	0	0	0	0	1162	1682	58	5		5	ATP5J	21	27097451	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	16067742	27097451	21032444	740	62943											
GRIK1	2897	broad.mit.edu	37	chr21	31201795	31201795	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctccaactttgaacacccTatgagaaccaagcaagagct	6	13	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31201795	A	A	31201795	1	1	56	0	1	0	0	0	0	0	0	0	6839	1537	53	5		5	GRIK1	21	31201795	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	4104344	31201795	16928100	741	62944											
GRIK1	2897	broad.mit.edu	37	chr21	31250662	31250662	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctattgtatgcttttgctAggagatggagacaagaatgt	11	5	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31250662	G	G	31250662	1	3	56	0	1	0	0	0	0	0	0	0	6839	435	15	5		5	GRIK1	21	31250662	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	48867	31250662	16879233	742	62945											
KRTAP19-8	728299	broad.mit.edu	37	chr21	32410821	32410821	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtttcctgagtacaactatCaccagcttccctgggacttt	7	12	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32410821	A	A	32410821	1	1	56	0	1	0	0	0	0	0	0	0	8606	841	29	3		3	KRTAP19-8	21	32410821	5'Flank	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1160159	32410821	15719074	743	62946											
KCNJ6	3763	broad.mit.edu	37	chr21	39034611	39034611	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctcgctctgtccatgTgttctcattgttcagcttcc	6	15	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39034611	C	C	39034611	1	2	56	0	1	0	0	0	0	0	0	0	8125	1711	59	5		5	KCNJ6	21	39034611	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	6623790	39034611	9095284	744	62947											
ERG	2078	broad.mit.edu	37	chr21	39823037	39823037	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccatgagagatggaatcaCctagagagagacagagagag	14	6	1	6			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39823037	T	T	39823037	1	4	56	0	1	0	0	0	0	0	0	0	5264	522	18	4		4	ERG	21	39823037	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	788426	39823037	8306858	745	62948											
IGSF5	150084	broad.mit.edu	37	chr21	41130054	41130054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctggtcgtcctggcacgTagggatcgcctgagcttggt	16	10	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41130054	A	A	41130054	1	1	56	0	1	0	0	0	0	0	0	0	7672	1653	57	5		5	IGSF5	21	41130054	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	1307017	41130054	6999841	746	62949											
DSCAM	1826	broad.mit.edu	37	chr21	42174562	42174562	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gattaatccattcatggattCatgggttatcacagcagtgg	10	7	3	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42174562	A	A	42174562	1	1	56	0	1	0	0	0	0	0	0	0	4808	841	29	3		3	DSCAM	21	42174562	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1044508	42174562	5955333	747	62950											
ABCG1	9619	broad.mit.edu	37	chr21	43621940	43621940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagtctagagatgattcttGgtgtgggctgtgggagctcc	16	6	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43621940	A	A	43621940	1	1	56	0	1	0	0	0	0	0	0	0	68	1363	47	4		4	ABCG1	21	43621940	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1447378	43621940	4507955	748	62951											
CECR6	27439	broad.mit.edu	37	chr22	17601064	17601064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcgatggagtagataagCcaggccaggtaggcgaaggc	17	7	0	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17601064	A	A	17601064	3	1	56	1	0	0	0	0	1	0	0	0	3238	740	26	3	786	3	CECR6	22	17601064	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08		17601064	33703502	749	62952											
CECR5	27440	broad.mit.edu	37	chr22	17629269	17629269	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctcactacagtccccaCtcagctaagggaggaaacac	7	15	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17629269	T	T	17629269	1	4	56	0	1	0	0	0	0	0	0	0	3237	580	20	4		4	CECR5	22	17629269	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	28205	17629269	33675297	750	62953											
CECR2	27443	broad.mit.edu	37	chr22	18022674	18022674	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggagaacagtgaagcacaaGagcctgagaatgaccaaggt	13	8	0	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18022674	C	C	18022674	3	2	56	1	0	0	0	0	1	0	0	0	3236	943	33	4	2836	4	CECR2	22	18022674	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	393405	18022674	33281892	751	62954											
DGCR2	9993	broad.mit.edu	37	chr22	19044762	19044762	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaccatggcgtcagacaGgatcatcaaccacagggcct	13	12	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19044762	A	A	19044762	1	1	56	0	1	0	0	0	0	0	0	0	4501	1015	35	4		4	DGCR2	22	19044762	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1022088	19044762	32259804	752	62955											
CLTCL1	8218	broad.mit.edu	37	chr22	19245911	19245911	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtccaccgagatcagagCtgctgagataacactcacag	10	12	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19245911	T	T	19245911	1	4	56	0	1	0	0	0	0	0	0	0	3599	812	28	4		4	CLTCL1	22	19245911	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	201149	19245911	32058655	753	62956											
SNRPD3	6634	broad.mit.edu	37	chr22	24964112	24964112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccaaggctcaggggctgGccgaggaaaagctgctattc	13	10	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24964112	T	T	24964112	3	4	56	1	0	0	0	0	1	0	0	0	14980	1203	42	3	293	3	SNRPD3	22	24964112	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	5718201	24964112	26340454	754	62957											
MYO18B	84700	broad.mit.edu	37	chr22	26284354	26284354	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctcctgcctcagcttccaGagcagctgggactataggca	10	14	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26284354	T	T	26284354	1	4	56	0	1	0	0	0	0	0	0	0	10160	957	33	3		3	MYO18B	22	26284354	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1320242	26284354	25020212	755	62958											
MOV10L1	54456	broad.mit.edu	37	chr22	50563938	50563938	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatcatcttaagaaggaatGgggatctgctggttctggag	15	5	4	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50563938	C	C	50563938	3	2	56	1	0	0	0	0	1	0	0	0	9813	1348	47	4	1770	4	MOV10L1	22	50563938	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	24279584	50563938	740628	756	62959											
ARSF	416	broad.mit.edu	37	chrX	3028172	3028172	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctgtgtctctgcagggtCattgacggccgagacctcat	12	11	4	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3028172	A	A	3028172	2	1	56	1	0	0	0	0	0	0	0	1	995	813	29	3		3	ARSF	23	3028172	Silent	SNP	C	TCGA-17-Z025-01A-01W-0746-08		3028172	152242388	757	62960											
AMELX	265	broad.mit.edu	37	chrX	11316225	11316225	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctttcttttgtagaaCtcacattctcaggctatcaa	4	10	6	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11316225	G	G	11316225	1	3	56	0	1	0	0	0	0	0	0	0	569	564	20	4		4	AMELX	23	11316225	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	8288053	11316225	143954335	758	62961											
FRMPD4	9758	broad.mit.edu	37	chrX	12331437	12331437	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatttagggatggaatcatGggatagcaccttgaggagat	14	4	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12331437	A	A	12331437	1	1	56	0	1	0	0	0	0	0	0	0	6119	1363	47	4		4	FRMPD4	23	12331437	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1015212	12331437	142939123	759	62962											
CTPS2	56474	broad.mit.edu	37	chrX	16657034	16657034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcacgcagatcaaatgCggaggggcattcagtgtgtt	15	7	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16657034	A	A	16657034	1	1	56	0	1	0	0	0	0	0	0	0	4057	783	27	3		3	CTPS2	23	16657034	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4325597	16657034	138613526	760	62963											
CTPS2	56474	broad.mit.edu	37	chrX	16709760	16709760	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatctgtcaaagccagttaTgcttcagcaaacaggattca	7	10	4	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16709760	C	C	16709760	1	2	56	0	1	0	0	0	0	0	0	0	4057	1479	51	5		5	CTPS2	23	16709760	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	52726	16709760	138560800	761	62964											
TAB3	257397	broad.mit.edu	37	chrX	30970573	30970573	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaatcagtcgcagattGgaggagagtaagaagacata	13	4	1	5			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30970573	C	C	30970573	1	2	56	0	1	0	0	0	0	0	0	0	15616	1363	47	4		4	TAB3	23	30970573	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	14260813	30970573	124299987	762	62965											
DMD	1756	broad.mit.edu	37	chrX	32490480	32490480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaattgtttcacactttgcCatgttttcctaaattgtcag	5	8	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32490480	A	A	32490480	1	1	56	0	1	0	0	0	0	0	0	0	4620	609	21	2		2	DMD	23	32490480	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1519907	32490480	122780080	763	62966											
CXorf36	79742	broad.mit.edu	37	chrX	45017513	45017513	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggagggcactgggcaggcTgagggcagggcaggggagag	23	7	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45017513	A	A	45017513	1	1	56	0	1	0	0	0	0	0	0	0	4139	1595	55	5		5	CXorf36	23	45017513	Intron	SNP	T	TCGA-17-Z025-01A-01W-0746-08	12527033	45017513	110253047	764	62967											
CFP	5199	broad.mit.edu	37	chrX	47489073	47489073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagagcacggggtctgagCctgtaacagggccaggggat	17	9	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47489073	A	A	47489073	3	1	56	1	0	0	0	0	1	0	0	0	3323	753	26	3	1364	3	CFP	23	47489073	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2471560	47489073	107781487	765	62968											
WAS	7454	broad.mit.edu	37	chrX	48549500	48549500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttctctttccctccagacGaaggggaggaccaggctggc	12	13	1	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48549500	A	A	48549500	3	1	56	1	0	0	0	0	1	0	0	0	17378	1059	37	4	1502	4	WAS	23	48549500	Missense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1060427	48549500	106721060	766	62969											
PFKFB1	5207	broad.mit.edu	37	chrX	54978397	54978397	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcggcctctgatgttgagttCactctcgccatgtcggcaaa	11	12	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54978397	A	A	54978397	4	1	56	1	0	0	0	0	0	1	0	0	11855	835	29	3	656	3	PFKFB1	23	54978397	Nonsense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	6428897	54978397	100292163	767	62970											
AR	367	broad.mit.edu	37	chrX	66789691	66789691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccattctttgtgtgactGcttctaggtatgtctttttc	8	8	3	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66789691	T	T	66789691	1	4	56	0	1	0	0	0	0	0	0	0	838	1334	46	3		3	AR	23	66789691	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	11811294	66789691	88480869	768	62971											
STARD8	9754	broad.mit.edu	37	chrX	67882458	67882458	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagacgggtgggacaaaccAcaggctttgatacatcctca	10	11	1	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67882458	T	T	67882458	1	4	56	0	1	0	0	0	0	0	0	0	15381	174	6	5		5	STARD8	23	67882458	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1092767	67882458	87388102	769	62972											
ATRX	546	broad.mit.edu	37	chrX	76854957	76854957	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccacctccccgagatcttGaattccagaccttaatcact	4	16	2	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76854957	C	C	76854957	4	2	56	1	0	0	0	0	0	1	0	0	1212	1294	45	4	1643	4	ATRX	23	76854957	Nonsense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	8972499	76854957	78415603	770	62973											
ATRX	546	broad.mit.edu	37	chrX	76920135	76920135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctctggggagctcaccCtcatctcctgggttttcttc	8	14	6	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76920135	A	A	76920135	3	1	56	1	0	0	0	0	1	0	0	0	1212	695	24	2	3636	2	ATRX	23	76920135	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	65178	76920135	78350425	771	62974											
ARMCX3	51566	broad.mit.edu	37	chrX	100880148	100880148	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggccaggtataatgactGgtctgatgatgatgatgaca	14	5	1	6			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100880148	A	A	100880148	4	1	56	1	0	0	0	0	0	1	0	0	965	1357	47	4	181	4	ARMCX3	23	100880148	Nonsense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	23960013	100880148	54390412	772	62975											
TMSB15A	11013	broad.mit.edu	37	chrX	101770133	101770133	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaataaacatttttaagAaaacttacctggcagaactg	6	6	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101770133	G	G	101770133	1	3	56	0	1	0	0	0	0	0	0	0	16378	261	9	5		5	TMSB15A	23	101770133	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	889985	101770133	53500427	773	62976											
TMEM164	84187	broad.mit.edu	37	chrX	109396831	109396831	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggacttcccccaccacaaAtaccaaaatccaaggatgct	5	14	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109396831	G	G	109396831	1	3	56	0	1	0	0	0	0	0	0	0	16202	116	4	5		5	TMEM164	23	109396831	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	7626698	109396831	45873729	774	62977											
CAPN6	827	broad.mit.edu	37	chrX	110511783	110511783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttcttttctgtctttagGggaaactaatgaaatttgat	7	4	3	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110511783	T	T	110511783	1	4	56	0	1	0	0	0	0	0	0	0	2656	1247	43	2		2	CAPN6	23	110511783	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	1114952	110511783	44758777	775	62978											
LUZP4	51213	broad.mit.edu	37	chrX	114536449	114536449	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attatcatttttagggctacCagtttttaggtattctgaaa	7	5	2	1			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114536449	G	G	114536449	1	3	56	0	1	0	0	0	0	0	0	0	9175	609	21	4		4	LUZP4	23	114536449	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	4024666	114536449	40734111	776	62979											
ENOX2	10495	broad.mit.edu	37	chrX	129966412	129966412	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacacacacacacacacacaCatacacacacacacacacac	0	19	0	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129966412	T	T	129966412	1	4	56	0	1	0	0	0	0	0	0	0	5169	493	17	4		4	ENOX2	23	129966412	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	15429963	129966412	25304148	777	62980											
GPC3	2719	broad.mit.edu	37	chrX	133065547	133065547	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggagggggcagaagatAggacatgaacaagttgctta	16	4	0	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133065547	G	G	133065547	1	3	56	0	1	0	0	0	0	0	0	0	6664	435	15	5		5	GPC3	23	133065547	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	3099135	133065547	22205013	778	62981											
CXorf48	54967	broad.mit.edu	37	chrX	134299334	134299334	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaggcacaacatacgaaAacccatgaaatacagcaaaa	6	9	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134299334	G	G	134299334	1	3	56	0	1	0	0	0	0	0	0	0	4144	29	1	5		5	CXorf48	23	134299334	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	1233787	134299334	20971226	779	62982											
MMGT1	93380	broad.mit.edu	37	chrX	135047163	135047163	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctctgtgtcctgtcctatTattataatttgtaaaaatct	5	7	2	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135047163	C	C	135047163	1	2	56	0	1	0	0	0	0	0	0	0	9740	1769	61	5		5	MMGT1	23	135047163	3'UTR	SNP	T	TCGA-17-Z025-01A-01W-0746-08	747829	135047163	20223397	780	62983											
GPR112	139378	broad.mit.edu	37	chrX	135429739	135429739	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcatactcccggggtactCcatctttggaaatgacagat	8	10	2	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135429739	T	T	135429739	3	4	56	1	0	0	0	0	1	0	0	0	6694	855	30	4	3884	4	GPR112	23	135429739	Missense_Mutation	SNP	C	TCGA-17-Z025-01A-01W-0746-08	382576	135429739	19840821	781	62984											
AFF2	2334	broad.mit.edu	37	chrX	147693320	147693320	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtagtgggcccagccactcAtttggcagttgttagggagt	14	9	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147693320	T	T	147693320	1	4	56	0	1	0	0	0	0	0	0	0	357	232	8	5		5	AFF2	23	147693320	Intron	SNP	A	TCGA-17-Z025-01A-01W-0746-08	12263581	147693320	7577240	782	62985											
AFF2	2334	broad.mit.edu	37	chrX	147967368	147967368	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaagatgtatccgaggatGatttagaaaatatgccttct	9	6	1	3			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147967368	T	T	147967368	1	4	56	0	1	0	0	0	0	0	0	0	357	1305	45	3		3	AFF2	23	147967368	Intron	SNP	G	TCGA-17-Z025-01A-01W-0746-08	274048	147967368	7303192	783	62986											
CD99L2	83692	broad.mit.edu	37	chrX	150046101	150046101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggagtttaagaccagCttgggcataacaagagcccg	13	10	0	2			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150046101	A	A	150046101	1	1	56	0	1	0	0	0	0	0	0	0	3081	812	28	3		3	CD99L2	23	150046101	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	2078733	150046101	5224459	784	62987											
GABRQ	55879	broad.mit.edu	37	chrX	151812344	151812344	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acacactcacaagtccacatCcacacatgcacatatgcacg	4	16	1	0			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151812344	G	G	151812344	1	3	56	0	1	0	0	0	0	0	0	0	6235	870	30	4		4	GABRQ	23	151812344	Intron	SNP	C	TCGA-17-Z025-01A-01W-0746-08	1766243	151812344	3458216	785	62988											
F8	2157	broad.mit.edu	37	chrX	154156922	154156922	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcaataaaatagtgtcGtgttttcttttgaaagctgc	9	6	1	1	rs137852439		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154156922	A	A	154156922	4	1	56	1	0	0	0	0	0	1	0	0	5393	1153	40	4	1992	4	F8	23	154156922	Nonsense_Mutation	SNP	G	TCGA-17-Z025-01A-01W-0746-08	2344578	154156922	1113638	786	62989											
NOC2L	26155	broad.mit.edu	37	chr1	892383	892383	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catcttctccttcctccgctCcatcctcctcctcactggct	3	21	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	892383	G	G	892383	3	3	57	1	0	0	0	0	1	0	0	0	10608	855	30	4	1936	4	NOC2L	1	892383	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08		892383	248358238	1	62990											
KIAA1751	85452	broad.mit.edu	37	chr1	1897883	1897883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtttcctcctctgagctgGccccggggtccccctggata	11	16	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1897883	T	T	1897883	3	4	57	1	0	0	0	0	1	0	0	0	8326	1203	42	3	988	3	KIAA1751	1	1897883	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1005500	1897883	247352738	2	62991											
PRKCZ	5590	broad.mit.edu	37	chr1	2006562	2006562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgagtgatgaagattctGtgttgatggggtgagtggga	17	3	1	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2006562	T	T	2006562	1	4	57	0	1	0	0	0	0	0	0	0	12623	1392	48	3		3	PRKCZ	1	2006562	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	108679	2006562	247244059	3	62992											
PEX10	5192	broad.mit.edu	37	chr1	2339912	2339912	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacgtgatccccgtgagcctCttggccaggtggtagaagac	13	11	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2339912	G	G	2339912	3	3	57	1	0	0	0	0	1	0	0	0	11831	912	32	4	477	4	PEX10	1	2339912	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	333350	2339912	246910709	4	62993											
PRDM16	63976	broad.mit.edu	37	chr1	3347509	3347509	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagcaggaggacgtggagGaggaggacgacgatgacctg	19	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3347509	A	A	3347509	3	1	57	1	0	0	0	0	1	0	0	0	12563	1175	41	4	3416	4	PRDM16	1	3347509	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1007597	3347509	245903112	5	62994											
ZBTB48	3104	broad.mit.edu	37	chr1	6641242	6641242	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcccctcctccctctgtggGaaactgaagcaggccttgaa	11	14	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6641242	A	A	6641242	2	1	57	1	0	0	0	0	0	0	0	1	17675	1161	41	4		4	ZBTB48	1	6641242	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3293733	6641242	242609379	6	62995											
PIK3CD	5293	broad.mit.edu	37	chr1	9783262	9783262	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgttcagacaccatcgccAacatccaactcaacaagagc	5	16	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9783262	T	T	9783262	3	4	57	1	0	0	0	0	1	0	0	0	12010	130	5	5	2576	5	PIK3CD	1	9783262	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3142020	9783262	239467359	7	62996											
PLOD1	5351	broad.mit.edu	37	chr1	12008052	12008052	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaaccttttagtcctcacGgtggccactaaggagaccga	10	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12008052	C	C	12008052	2	2	57	1	0	0	0	0	0	0	0	1	12196	1103	39	4		4	PLOD1	1	12008052	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2224790	12008052	237242569	8	62997											
VPS13D	55187	broad.mit.edu	37	chr1	12342740	12342740	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaataataagagtaactgAatttttctcttttcaataca	3	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12342740	T	T	12342740	1	4	57	0	1	0	0	0	0	0	0	0	17319	261	9	5		5	VPS13D	1	12342740	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	334688	12342740	236907881	9	62998											
VPS13D	55187	broad.mit.edu	37	chr1	12475197	12475197	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaagacgctgtgattaatCtagatccattcactcgggta	9	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12475197	T	T	12475197	2	4	57	1	0	0	0	0	0	0	0	1	17319	912	32	4		4	VPS13D	1	12475197	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	132457	12475197	236775424	10	62999											
AADACL3	126767	broad.mit.edu	37	chr1	12785656	12785656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaactgaagccccatgagcCcatgaatgaagctgcttact	8	13	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12785656	A	A	12785656	3	1	57	1	0	0	0	0	1	0	0	0	12	623	22	2	764	2	AADACL3	1	12785656	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	310459	12785656	236464965	11	63000											
C1orf158	93190	broad.mit.edu	37	chr1	12819151	12819151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctctccatcagcaccacAgacccctacatgtggcagct	7	17	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12819151	G	G	12819151	1	3	57	0	1	0	0	0	0	0	0	0	2027	203	7	5		5	C1orf158	1	12819151	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	33495	12819151	236431470	12	63001											
FBLIM1	54751	broad.mit.edu	37	chr1	16093972	16093972	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccagtgcttctgccttctGaagaggaggctcctgctcca	10	14	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16093972	A	A	16093972	3	1	57	1	0	0	0	0	1	0	0	0	5754	1291	45	4	358	4	FBLIM1	1	16093972	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3274821	16093972	233156649	13	63002											
NBPF1	55672	broad.mit.edu	37	chr1	16935411	16935411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgggaactagaggtgGttgggtttctgtcatatgta	17	3	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16935411	T	T	16935411	1	4	57	0	1	0	0	0	0	0	0	0	10286	1276	44	3		3	NBPF1	1	16935411	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	841439	16935411	232315210	14	63003											
NBPF1	55672	broad.mit.edu	37	chr1	16942589	16942589	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttagtcctcataccGtcctcatggggtaggtatta	8	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16942589	A	A	16942589	1	1	57	0	1	0	0	0	0	0	0	0	10286	1160	40	4		4	NBPF1	1	16942589	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7178	16942589	232308032	15	63004											
SDHB	6390	broad.mit.edu	37	chr1	17354337	17354337	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaggctcaatggatttgtaCtgtgcatagaagttgctcaa	10	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17354337	T	T	17354337	2	4	57	1	0	0	0	0	0	0	0	1	14078	564	20	4		4	SDHB	1	17354337	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	411748	17354337	231896284	16	63005											
IGSF21	84966	broad.mit.edu	37	chr1	18704875	18704875	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctccacgaccggttttcAtttcttttctaaactatttc	3	12	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18704875	G	G	18704875	1	3	57	0	1	0	0	0	0	0	0	0	7669	232	8	5		5	IGSF21	1	18704875	3'UTR	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1350538	18704875	230545746	17	63006											
EIF4G3	8672	broad.mit.edu	37	chr1	21183933	21183933	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttgaggggtccagtaccCgactgttcttggccccttgt	11	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21183933	T	T	21183933	3	4	57	1	0	0	0	0	1	0	0	0	5080	652	23	4	1675	4	EIF4G3	1	21183933	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2479058	21183933	228066688	18	63007											
LUZP1	7798	broad.mit.edu	37	chr1	23418753	23418753	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taccaacttggcagtaacaaGagatgctatgtccaagtcat	8	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23418753	A	A	23418753	3	1	57	1	0	0	0	0	1	0	0	0	9173	942	33	4	1236	4	LUZP1	1	23418753	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2234820	23418753	225831868	19	63008											
C1orf213	148898	broad.mit.edu	37	chr1	23696036	23696036	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaattcgtagacttgcaggcGaagcccagatatcgtaggct	12	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23696036	A	A	23696036	2	1	57	1	0	0	0	0	0	0	0	1	2052	1045	37	4		4	C1orf213	1	23696036	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	277283	23696036	225554585	20	63009											
RHCE	6006	broad.mit.edu	37	chr1	25701839	25701839	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggtggcctcacactgaCctgtcaggagaccagacgtg	13	11	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25701839	A	A	25701839	5	1	57	1	0	0	0	0	0	0	1	0	13434	521	18	3	111	3	RHCE	1	25701839	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2005803	25701839	223548782	21	63010											
EXTL1	2134	broad.mit.edu	37	chr1	26360187	26360188	+	Missense_Mutation	DNP	GT	AA	AA													tcacttgagtccctccccagGtggactttgcctttctggtg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26360188	AA	AA	26360187	3	1	57	1	0	0	0	0	1	0	0	0	5368	1275	44	4	1553	4	EXTL1	1	26360187	Missense_Mutation	DNP	GT	TCGA-17-Z026-01A-01W-0746-08	658348	26360187	222890434	22	63011											
SFN	2810	broad.mit.edu	37	chr1	27189778	27189778	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgaggacatggcagccttCatgaaaggcgccgtggagaa	14	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27189778	T	T	27189778	2	4	57	1	0	0	0	0	0	0	0	1	14272	825	29	4		4	SFN	1	27189778	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	829591	27189778	222060843	23	63012											
KPNA6	23633	broad.mit.edu	37	chr1	32628050	32628050	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgggccctttcttatcTgtctgatggccccaatgaga	10	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32628050	C	C	32628050	3	2	57	1	0	0	0	0	1	0	0	0	8505	1580	55	5	870	5	KPNA6	1	32628050	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	5438272	32628050	216622571	24	63013											
KPNA6	23633	broad.mit.edu	37	chr1	32631613	32631613	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcaaaaaaaaaaacaaAaacaacaacaacaacaacaa	1	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32631613	C	C	32631613	1	2	57	0	1	0	0	0	0	0	0	0	8505	29	1	5		5	KPNA6	1	32631613	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3563	32631613	216619008	25	63014											
IQCC	55721	broad.mit.edu	37	chr1	32673606	32673606	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatcaaagtcacctgagattCtgtcttctacaaaggcaggc	9	10	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32673606	T	T	32673606	2	4	57	1	0	0	0	0	0	0	0	1	7874	912	32	4		4	IQCC	1	32673606	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	41993	32673606	216577015	26	63015											
RNF19B	127544	broad.mit.edu	37	chr1	33410993	33410993	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cataatcatggtgcctaacaGaatttactatcaaggtgggt	9	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33410993	A	A	33410993	1	1	57	0	1	0	0	0	0	0	0	0	13582	957	33	4		4	RNF19B	1	33410993	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	737387	33410993	215839628	27	63016											
GJA4	2701	broad.mit.edu	37	chr1	35260489	35260489	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctccctggtgcttaacctGctggagttggtgcacctgct	11	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35260489	C	C	35260489	2	2	57	1	0	0	0	0	0	0	0	1	6467	1306	46	4		4	GJA4	1	35260489	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1849496	35260489	213990132	28	63017											
MACF1	23499	broad.mit.edu	37	chr1	39913054	39913054	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgctgagcctataattcctGaaattggcgctttttctttc	7	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39913054	T	T	39913054	1	4	57	0	1	0	0	0	0	0	0	0	9232	1305	45	3		3	MACF1	1	39913054	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4652565	39913054	209337567	29	63018											
ZMPSTE24	10269	broad.mit.edu	37	chr1	40737629	40737629	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaattcacacctctgcctGagggaaagcttaaagaagaa	8	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40737629	C	C	40737629	3	2	57	1	0	0	0	0	1	0	0	0	17824	1291	45	4	713	4	ZMPSTE24	1	40737629	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	824575	40737629	208512992	30	63019											
WDR65	149465	broad.mit.edu	37	chr1	43664147	43664147	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcagtaattgatctttttCacagcaccctggaactattt	5	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43664147	T	T	43664147	1	4	57	0	1	0	0	0	0	0	0	0	17443	841	29	4		4	WDR65	1	43664147	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2926518	43664147	205586474	31	63020											
DPH2	1802	broad.mit.edu	37	chr1	44436151	44436151	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccacctactacgtggggcaGagtgcccctctgggaccagg	13	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44436151	C	C	44436151	1	2	57	0	1	0	0	0	0	0	0	0	4760	957	33	4		4	DPH2	1	44436151	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	772004	44436151	204814470	32	63021											
HECTD3	79654	broad.mit.edu	37	chr1	45472822	45472822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtttgtgtgtgtttg	19	0	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45472822	T	T	45472822	1	4	57	0	1	0	0	0	0	0	0	0	7108	1392	48	3		3	HECTD3	1	45472822	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1036671	45472822	203777799	33	63022											
AGBL4	84871	broad.mit.edu	37	chr1	49023513	49023513	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagaagcgcacagctcagGagccaccagacctgggacta	11	13	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49023513	T	T	49023513	1	4	57	0	1	0	0	0	0	0	0	0	377	1189	41	3		3	AGBL4	1	49023513	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3550691	49023513	200227108	34	63023											
OSBPL9	114883	broad.mit.edu	37	chr1	52227619	52227619	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggctaccttgggacatcatCagactcctacaccaaatagt	7	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52227619	G	G	52227619	3	3	57	1	0	0	0	0	1	0	0	0	11378	827	29	4	900	4	OSBPL9	1	52227619	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3204106	52227619	197023002	35	63024											
BTF3L4	91408	broad.mit.edu	37	chr1	52549309	52549309	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttaatttggatttgcctgtAtgtaattattttactttcta	5	5	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52549309	T	T	52549309	1	4	57	0	1	0	0	0	0	0	0	0	1562	464	16	5		5	BTF3L4	1	52549309	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	321690	52549309	196701312	36	63025											
PRPF38A	84950	broad.mit.edu	37	chr1	52874343	52874343	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgactatcgaaaaatcaaGagccagaaccgaaatggggg	11	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52874343	A	A	52874343	2	1	57	1	0	0	0	0	0	0	0	1	12673	933	33	4		4	PRPF38A	1	52874343	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	325034	52874343	196376278	37	63026											
DNAJC6	9829	broad.mit.edu	37	chr1	65867630	65867630	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataaagcctcaaatctcagtCtttggtgttacagcaagctg	8	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65867630	G	G	65867630	1	3	57	0	1	0	0	0	0	0	0	0	4693	928	32	4		4	DNAJC6	1	65867630	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12993287	65867630	183382991	38	63027											
LEPR	3953	broad.mit.edu	37	chr1	66031414	66031414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaggaattctcatacatgCttatgattaaaaatgcaaac	6	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66031414	A	A	66031414	1	1	57	0	1	0	0	0	0	0	0	0	8800	812	28	3		3	LEPR	1	66031414	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	163784	66031414	183219207	39	63028											
SGIP1	84251	broad.mit.edu	37	chr1	67108564	67108564	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctatatcctttctttattTttttattttaattttcattc	2	6	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67108564	A	A	67108564	1	1	57	0	1	0	0	0	0	0	0	0	14319	1856	64	5		5	SGIP1	1	67108564	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1077150	67108564	182142057	40	63029											
SGIP1	84251	broad.mit.edu	37	chr1	67109129	67109129	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctttgattttctgccatcTaaggatacttttgctgtctc	7	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67109129	C	C	67109129	1	2	57	0	1	0	0	0	0	0	0	0	14319	1537	53	5		5	SGIP1	1	67109129	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	565	67109129	182141492	41	63030											
LRRC7	57554	broad.mit.edu	37	chr1	70502326	70502326	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtgtgtttagaattccctCcttttgttcccaaacgttta	7	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70502326	A	A	70502326	1	1	57	0	1	0	0	0	0	0	0	0	9107	870	30	3		3	LRRC7	1	70502326	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3393197	70502326	178748295	42	63031											
LRRC7	57554	broad.mit.edu	37	chr1	70542017	70542017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattactgaaaaatcttcaGgtaagaaaagtccaaagaat	6	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70542017	A	A	70542017	1	1	57	0	1	0	0	0	0	0	0	0	9107	1015	35	4		4	LRRC7	1	70542017	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	39691	70542017	178708604	43	63032											
ZRANB2	9406	broad.mit.edu	37	chr1	71542449	71542449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttagtgctttaaaaaaaatCatttagttacaatgtggttt	6	3	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71542449	T	T	71542449	1	4	57	0	1	0	0	0	0	0	0	0	18352	841	29	4		4	ZRANB2	1	71542449	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1000432	71542449	177708172	44	63033											
NEGR1	257194	broad.mit.edu	37	chr1	72740798	72740798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacttgggaacagaaagCcagatctttatttcccgcac	8	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72740798	A	A	72740798	1	1	57	0	1	0	0	0	0	0	0	0	10412	754	26	3		3	NEGR1	1	72740798	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1198349	72740798	176509823	45	63034											
FAM73A	374986	broad.mit.edu	37	chr1	78326964	78326964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctattttttagagcagaCcgatcactggggtagtactg	11	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78326964	T	T	78326964	3	4	57	1	0	0	0	0	1	0	0	0	5668	507	18	4	1377	4	FAM73A	1	78326964	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5586166	78326964	170923657	46	63035											
GIPC2	54810	broad.mit.edu	37	chr1	78511976	78511976	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctccagcatccaggagctCtacgcccagatcgcgggcgc	11	16	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78511976	G	G	78511976	2	3	57	1	0	0	0	0	0	0	0	1	6457	900	32	4		4	GIPC2	1	78511976	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	185012	78511976	170738645	47	63036											
CYR61	3491	broad.mit.edu	37	chr1	86048044	86048044	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttgtagaaatgagtgcttGagcctgtttgtgtcggtatg	13	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86048044	A	A	86048044	1	1	57	0	1	0	0	0	0	0	0	0	4232	1305	45	4		4	CYR61	1	86048044	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7536068	86048044	163202577	48	63037											
TGFBR3	7049	broad.mit.edu	37	chr1	92182368	92182368	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatcattctgatgcaaattGaaaatctgactttaagacaa	5	6	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92182368	A	A	92182368	1	1	57	0	1	0	0	0	0	0	0	0	15946	1305	45	4		4	TGFBR3	1	92182368	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6134324	92182368	157068253	49	63038											
ABCA4	24	broad.mit.edu	37	chr1	94463735	94463735	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaggtaatcccaaaataagGagtagactcatcagaaattt	7	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94463735	T	T	94463735	1	4	57	0	1	0	0	0	0	0	0	0	34	1189	41	3		3	ABCA4	1	94463735	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2281367	94463735	154786886	50	63039											
SASS6	163786	broad.mit.edu	37	chr1	100598282	100598282	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccccaaccgccacccgcgGgcactggatgacgcggacct	12	18	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100598282	A	A	100598282	1	1	57	0	1	0	0	0	0	0	0	0	13962	1247	43	4		4	SASS6	1	100598282	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6134547	100598282	148652339	51	63040											
COL11A1	1301	broad.mit.edu	37	chr1	103386018	103386018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaaaaagagaaatagatGcatgagtattcttagtcatt	7	5	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103386018	T	T	103386018	1	4	57	0	1	0	0	0	0	0	0	0	3699	1334	46	3		3	COL11A1	1	103386018	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2787736	103386018	145864603	52	63041											
COL11A1	1301	broad.mit.edu	37	chr1	103462502	103462502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attactgatataaaattaaaAgtagtctaagatatcttttt	4	3	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103462502	T	T	103462502	1	4	57	0	1	0	0	0	0	0	0	0	3699	87	3	5		5	COL11A1	1	103462502	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	76484	103462502	145788119	53	63042											
COL11A1	1301	broad.mit.edu	37	chr1	103471865	103471865	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggggaccctggacgcctcGagggccctatatcaagacat	13	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103471865	A	A	103471865	4	1	57	1	0	0	0	0	0	1	0	0	3699	1066	37	4	3938	4	COL11A1	1	103471865	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9363	103471865	145778756	54	63043											
SYPL2	284612	broad.mit.edu	37	chr1	110022119	110022119	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaccaggaccagggccaGggtcccagccaggagagtgc	16	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110022119	A	A	110022119	2	1	57	1	0	0	0	0	0	0	0	1	15582	991	35	4		4	SYPL2	1	110022119	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6550254	110022119	139228502	55	63044											
KCNA3	3738	broad.mit.edu	37	chr1	111215974	111215974	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttctgtctcccggtggtaGaagtaattgaagttggaaac	11	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111215974	T	T	111215974	3	4	57	1	0	0	0	0	1	0	0	0	8074	933	33	3	273	3	KCNA3	1	111215974	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1193855	111215974	138034647	56	63045											
ST7L	54879	broad.mit.edu	37	chr1	113126701	113126701	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataacctttcagcatctacaAtagttgttgcttcttcctca	4	11	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113126701	T	T	113126701	3	4	57	1	0	0	0	0	1	0	0	0	15348	101	4	5	1053	5	ST7L	1	113126701	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1910727	113126701	136123920	57	63046											
SLC22A15	55356	broad.mit.edu	37	chr1	116609591	116609591	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatggtagtttccatttcaGaaatgtcataacatcatttc	6	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116609591	A	A	116609591	1	1	57	0	1	0	0	0	0	0	0	0	14559	957	33	4		4	SLC22A15	1	116609591	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3482890	116609591	132641030	58	63047											
PTGFRN	5738	broad.mit.edu	37	chr1	117492296	117492296	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgcgctttgcatgacttcGacattatttctattggttca	7	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117492296	T	T	117492296	1	4	57	0	1	0	0	0	0	0	0	0	12856	1073	37	3		3	PTGFRN	1	117492296	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	882705	117492296	131758325	59	63048											
GDAP2	54834	broad.mit.edu	37	chr1	118413399	118413399	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaggtagttcaactagtatCactcagagtataagacagac	8	7	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118413399	T	T	118413399	1	4	57	0	1	0	0	0	0	0	0	0	6372	841	29	4		4	GDAP2	1	118413399	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	921103	118413399	130837222	60	63049											
SPAG17	200162	broad.mit.edu	37	chr1	118530429	118530429	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tactctgggccctttcaggtCcttatgtgcgttttggggta	12	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118530429	A	A	118530429	1	1	57	0	1	0	0	0	0	0	0	0	15095	870	30	3		3	SPAG17	1	118530429	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	117030	118530429	130720192	61	63050											
SPAG17	200162	broad.mit.edu	37	chr1	118634396	118634396	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtgttctccattatttcCatcaaaatttcatgcataat	4	8	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118634396	T	T	118634396	1	4	57	0	1	0	0	0	0	0	0	0	15095	609	21	4		4	SPAG17	1	118634396	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	103967	118634396	130616225	62	63051											
TBX15	6913	broad.mit.edu	37	chr1	119467273	119467273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggattctttgactcacatgtCcttgatcatccaactcattg	6	11	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119467273	A	A	119467273	3	1	57	1	0	0	0	0	1	0	0	0	15774	855	30	3	1139	3	TBX15	1	119467273	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	832877	119467273	129783348	63	63052											
HSD3B1	3283	broad.mit.edu	37	chr1	120050339	120050339	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagcaagttattgaaatttGtagccaaatctaagccaatc	6	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120050339	A	A	120050339	1	1	57	0	1	0	0	0	0	0	0	0	7457	1392	48	4		4	HSD3B1	1	120050339	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	583066	120050339	129200282	64	63053											
ZNF697	90874	broad.mit.edu	37	chr1	120179048	120179048	+	Intron	DEL	T	-	-													ttatcataacaattcaaaaaTgatacagagtggttttgggt					rs35486687		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120179048	-	-	120179048	6	5	57	0	1	1	0	1	0	0	0	0	18227	1479	51	0		0	ZNF697	1	120179048	Intron	DEL	T	TCGA-17-Z026-01A-01W-0746-08	128709	120179048	129071573	65	63054											
NBPF9	400818	broad.mit.edu	37	chr1	144619263	144619263	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgaaccatacatagatGttcatgtctctgtgcacgtt	8	9	2	2	rs57839712		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144619263	A	A	144619263	1	1	57	0	1	0	0	0	0	0	0	0	10294	1392	48	4		4	NBPF9	1	144619263	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	24440215	144619263	104631358	66	63055											
PDE4DIP	9659	broad.mit.edu	37	chr1	144866042	144866042	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaggactgaaggcctgGccctgaatgaagcgtggggg	16	11	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144866042	A	A	144866042	1	1	57	0	1	0	0	0	0	0	0	0	11737	1218	42	4		4	PDE4DIP	1	144866042	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	246779	144866042	104384579	67	63056											
PDE4DIP	9659	broad.mit.edu	37	chr1	144946727	144946727	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggcagccaggctctgattCagttcttcaattctcctgaa	9	11	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144946727	T	T	144946727	2	4	57	1	0	0	0	0	0	0	0	1	11737	813	29	4		4	PDE4DIP	1	144946727	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	80685	144946727	104303894	68	63057											
NBPF9	400818	broad.mit.edu	37	chr1	145080796	145080796	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataacagacctcaaaaacaCagtaaaaatgtctaataagt	4	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145080796	T	T	145080796	1	4	57	0	1	0	0	0	0	0	0	0	10294	493	17	4		4	NBPF9	1	145080796	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	134069	145080796	104169825	69	63058											
NBPF9	400818	broad.mit.edu	37	chr1	145080872	145080872	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagcagtatttcaggagaCaaagctcaagaattttctaa	9	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145080872	T	T	145080872	1	4	57	0	1	0	0	0	0	0	0	0	10294	493	17	4		4	NBPF9	1	145080872	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	76	145080872	104169749	70	63059											
NBPF10	100132406	broad.mit.edu	37	chr1	145267106	145267106	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatataaaatggagattatAatatagcactggagcgagta	9	3	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145267106	G	G	145267106	1	3	57	0	1	0	0	0	0	0	0	0	10287	377	13	5		5	NBPF10	1	145267106	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	186234	145267106	103983515	71	63060											
NOTCH2NL	388677	broad.mit.edu	37	chr1	145281451	145281451	+	Frame_Shift_Del	DEL	C	-	-													accactgtggccaaccagttCtcctgcaaatgcctcacagg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145281451	-	-	145281451	7	5	57	1	0	1	0	1	0	0	0	0	10644	912	32	0	391	0	NOTCH2NL	1	145281451	Frame_Shift_Del	DEL	C	TCGA-17-Z026-01A-01W-0746-08	14345	145281451	103969170	72	63061											
LOC200030	200030	broad.mit.edu	37	chr1	148004980	148004980	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtagaaaacaatgaaagaGaaagacagagagagagagac	13	3	0	7			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148004980	A	A	148004980	1	1	57	0	1	0	0	0	0	0	0	0	8950	957	33	4		4	LOC200030	1	148004980	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2723529	148004980	101245641	73	63062											
OTUD7B	56957	broad.mit.edu	37	chr1	149943104	149943104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcccctcactaaaggatGggggtaggtttccagcatgg	12	11	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149943104	T	T	149943104	3	4	57	1	0	0	0	0	1	0	0	0	11413	1348	47	2	2410	2	OTUD7B	1	149943104	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1938124	149943104	99307517	74	63063											
VPS45	11311	broad.mit.edu	37	chr1	150064256	150064256	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attatattcttagctctaacGaatgataaatcatactattt	3	6	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150064256	A	A	150064256	1	1	57	0	1	0	0	0	0	0	0	0	17338	1073	37	4		4	VPS45	1	150064256	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	121152	150064256	99186365	75	63064											
PRPF3	9129	broad.mit.edu	37	chr1	150316592	150316592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataacaagttactccagctGgagaagtgacttcaaagact	8	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150316592	T	T	150316592	1	4	57	0	1	0	0	0	0	0	0	0	12671	1363	47	2		2	PRPF3	1	150316592	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	252336	150316592	98934029	76	63065											
CGN	57530	broad.mit.edu	37	chr1	151499485	151499485	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatggagaaggaggagatgGaagaggagcttggagagaag	20	1	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151499485	T	T	151499485	4	4	57	1	0	0	0	0	0	1	0	0	3333	1175	41	3	1832	3	CGN	1	151499485	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1182893	151499485	97751136	77	63066											
MRPL9	65005	broad.mit.edu	37	chr1	151733198	151733198	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaatccagcctgggcaatGaaacaaaaccctgtctttaa	7	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151733198	A	A	151733198	1	1	57	0	1	0	0	0	0	0	0	0	9914	1305	45	4		4	MRPL9	1	151733198	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	233713	151733198	97517423	78	63067											
MRPL9	65005	broad.mit.edu	37	chr1	151733227	151733227	+	Intron	DEL	A	-	-													ccctgtctttaagagaaaggAaaaaaaggaaaaagtggggg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151733227	-	-	151733227	6	5	57	0	1	1	0	1	0	0	0	0	9914	261	9	0		0	MRPL9	1	151733227	Intron	DEL	A	TCGA-17-Z026-01A-01W-0746-08	29	151733227	97517394	79	63068											
MRPL9	65005	broad.mit.edu	37	chr1	151733896	151733896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagcttccacctcaggGgtagagtggtttttgggaac	15	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151733896	T	T	151733896	1	4	57	0	1	0	0	0	0	0	0	0	9914	1247	43	2		2	MRPL9	1	151733896	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	669	151733896	97516725	80	63069											
LINGO4	339398	broad.mit.edu	37	chr1	151774293	151774293	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagccgcaccagggggctGagccttcgggctgggatggc	19	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151774293	T	T	151774293	2	4	57	1	0	0	0	0	0	0	0	1	8890	1277	45	3		3	LINGO4	1	151774293	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	40397	151774293	97476328	81	63070											
TCHH	7062	broad.mit.edu	37	chr1	152083102	152083102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcggcgctgctcctggcttCgcctcctctcctgatcctcc	9	20	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152083102	T	T	152083102	3	4	57	1	0	0	0	0	1	0	0	0	15822	884	31	4	3244	4	TCHH	1	152083102	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	308809	152083102	97167519	82	63071											
RPTN	126638	broad.mit.edu	37	chr1	152130565	152130565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatctcattgctatagtGggagatggtgcaaacttggt	11	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152130565	T	T	152130565	1	4	57	0	1	0	0	0	0	0	0	0	13775	1363	47	2		2	RPTN	1	152130565	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	47463	152130565	97120056	83	63072											
HRNR	388697	broad.mit.edu	37	chr1	152193383	152193383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgctgactgtaaccagagGactgccctgagctagacttg	11	11	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152193383	T	T	152193383	3	4	57	1	0	0	0	0	1	0	0	0	7426	1174	41	3	7834	3	HRNR	1	152193383	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	62818	152193383	97057238	84	63073											
KPRP	448834	broad.mit.edu	37	chr1	152733201	152733201	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacgtagagccacgtccactCccaagcttctgtccaccacg	7	18	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152733201	G	G	152733201	2	3	57	1	0	0	0	0	0	0	0	1	8507	842	30	4		4	KPRP	1	152733201	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	539818	152733201	96517420	85	63074											
SPRR2D	6703	broad.mit.edu	37	chr1	153012868	153012868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgatacaacagtgtttGtgggaagggactcctccaga	12	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153012868	T	T	153012868	1	4	57	0	1	0	0	0	0	0	0	0	15217	1392	48	3		3	SPRR2D	1	153012868	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	279667	153012868	96237753	86	63075											
SPRR2F	6705	broad.mit.edu	37	chr1	153085330	153085330	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attatttctccaatctccaaGaaattatttaaactcttaat	1	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153085330	C	C	153085330	1	2	57	0	1	0	0	0	0	0	0	0	15219	957	33	4		4	SPRR2F	1	153085330	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	72462	153085330	96165291	87	63076											
LELP1	149018	broad.mit.edu	37	chr1	153176983	153176983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaggaagcagagttaaGggtggagagattaagaaatg	15	1	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153176983	T	T	153176983	1	4	57	0	1	0	0	0	0	0	0	0	8790	1015	35	2		2	LELP1	1	153176983	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	91653	153176983	96073638	88	63077											
SLC27A3	11000	broad.mit.edu	37	chr1	153751428	153751428	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatccaaagcttctgaacctCaactctctaatctgccacct	4	15	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153751428	T	T	153751428	1	4	57	0	1	0	0	0	0	0	0	0	14641	841	29	4		4	SLC27A3	1	153751428	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	574445	153751428	95499193	89	63078											
ATP8B2	57198	broad.mit.edu	37	chr1	154318893	154318893	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgatggcactcagctggctGactaccagtcctttgcagtc	10	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154318893	A	A	154318893	3	1	57	1	0	0	0	0	1	0	0	0	1199	1290	45	4	3292	4	ATP8B2	1	154318893	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	567465	154318893	94931728	90	63079											
ADAR	103	broad.mit.edu	37	chr1	154575013	154575013	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaagcaggaaactactgggGgaagatcctggcccaggctg	14	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154575013	A	A	154575013	2	1	57	1	0	0	0	0	0	0	0	1	281	1219	43	4		4	ADAR	1	154575013	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	256120	154575013	94675608	91	63080											
RUSC1	23623	broad.mit.edu	37	chr1	155292331	155292331	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaacaataacactggttGgaaaaacaacgggaatgtta	9	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155292331	A	A	155292331	4	1	57	1	0	0	0	0	0	1	0	0	13861	1357	47	4	769	4	RUSC1	1	155292331	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	717318	155292331	93958290	92	63081											
ASH1L	55870	broad.mit.edu	37	chr1	155324277	155324277	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccttaccagacttgatattCccatcatctcggcagatccc	6	15	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155324277	G	G	155324277	2	3	57	1	0	0	0	0	0	0	0	1	1045	842	30	4		4	ASH1L	1	155324277	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	31946	155324277	93926344	93	63082											
GON4L	54856	broad.mit.edu	37	chr1	155721781	155721781	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggacaaccttttccccagtgGagctgaccttgctgttgttg	11	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155721781	C	C	155721781	3	2	57	1	0	0	0	0	1	0	0	0	6636	1174	41	4	294	4	GON4L	1	155721781	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	397504	155721781	93528840	94	63083											
GON4L	54856	broad.mit.edu	37	chr1	155722997	155722997	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgttggcaaatcactcacctGaaacaggcatctctcccttt	6	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155722997	A	A	155722997	3	1	57	1	0	0	0	0	1	0	0	0	6636	1294	45	4	898	4	GON4L	1	155722997	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1216	155722997	93527624	95	63084											
SSR2	6746	broad.mit.edu	37	chr1	155981681	155981681	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcactggtagagccaatctGaaaagaagaaaagaacgaca	10	7	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155981681	C	C	155981681	1	2	57	0	1	0	0	0	0	0	0	0	15309	1305	45	4		4	SSR2	1	155981681	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	258684	155981681	93268940	96	63085											
LMNA	4000	broad.mit.edu	37	chr1	156100242	156100242	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttggggaggtgggagccCagccccagaggcaagcagat	16	11	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156100242	T	T	156100242	1	4	57	0	1	0	0	0	0	0	0	0	8922	609	21	4		4	LMNA	1	156100242	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	118561	156100242	93150379	97	63086											
SLC25A44	9673	broad.mit.edu	37	chr1	156170305	156170305	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggggaggaaggtgggatttCtaatggggctgagatactgt	19	3	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156170305	G	G	156170305	1	3	57	0	1	0	0	0	0	0	0	0	14623	928	32	4		4	SLC25A44	1	156170305	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	70063	156170305	93080316	98	63087											
INSRR	3645	broad.mit.edu	37	chr1	156813305	156813305	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagggggtcaggctggaagGgttctcaggaaggaatgagc	19	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156813305	C	C	156813305	1	2	57	0	1	0	0	0	0	0	0	0	7844	1247	43	4		4	INSRR	1	156813305	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	643000	156813305	92437316	99	63088											
ARHGEF11	9826	broad.mit.edu	37	chr1	156938092	156938092	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacattatctcattcgattCacacagtagccctttgaggt	6	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156938092	A	A	156938092	1	1	57	0	1	0	0	0	0	0	0	0	898	841	29	3		3	ARHGEF11	1	156938092	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	124787	156938092	92312529	100	63089											
ARHGEF11	9826	broad.mit.edu	37	chr1	156943483	156943483	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctctcctctatctcactCtgtcactggtatcacctgat	4	16	6	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156943483	G	G	156943483	1	3	57	0	1	0	0	0	0	0	0	0	898	928	32	4		4	ARHGEF11	1	156943483	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5391	156943483	92307138	101	63090											
ETV3	2117	broad.mit.edu	37	chr1	157098234	157098234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaaaagggaggcaagcaCgagactgggcctaatctcca	14	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157098234	A	A	157098234	1	1	57	0	1	0	0	0	0	0	0	0	5321	551	19	3		3	ETV3	1	157098234	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	154751	157098234	92152387	102	63091											
FCRL5	83416	broad.mit.edu	37	chr1	157509113	157509113	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggctccctcaaaaatcaggtCctcaggagagctgaggttga	12	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157509113	T	T	157509113	3	4	57	1	0	0	0	0	1	0	0	0	5855	855	30	4	1812	4	FCRL5	1	157509113	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	410879	157509113	91741508	103	63092											
CD5L	922	broad.mit.edu	37	chr1	157802914	157802914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttttccccagagtacacCcccatcatttcctcttcctt	2	19	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157802914	A	A	157802914	1	1	57	0	1	0	0	0	0	0	0	0	3057	638	22	2		2	CD5L	1	157802914	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	293801	157802914	91447707	104	63093											
CD1A	909	broad.mit.edu	37	chr1	158225694	158225694	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaattttattccattatgtCaaaccctgcacacttccccc	2	15	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158225694	T	T	158225694	1	4	57	0	1	0	0	0	0	0	0	0	3004	841	29	4		4	CD1A	1	158225694	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	422780	158225694	91024927	105	63094											
OR10X1	128367	broad.mit.edu	37	chr1	158548743	158548743	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caactgtgtttcccatcattCttctaaaagcatttttcatg	4	10	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158548743	G	G	158548743	3	3	57	1	0	0	0	0	1	0	0	0	11016	913	32	4	28	4	OR10X1	1	158548743	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	323049	158548743	90701878	106	63095											
OR10X1	128367	broad.mit.edu	37	chr1	158549249	158549249	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcataagcagtggataTcttagagggttacagatggc	13	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158549249	C	C	158549249	2	2	57	1	0	0	0	0	0	0	0	1	11016	1432	50	5		5	OR10X1	1	158549249	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	506	158549249	90701372	107	63096											
SPTA1	6708	broad.mit.edu	37	chr1	158618181	158618181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaagaataaatatggcacAgaacagagagaaatataaga	8	4	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158618181	T	T	158618181	1	4	57	0	1	0	0	0	0	0	0	0	15234	203	7	5		5	SPTA1	1	158618181	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	68932	158618181	90632440	108	63097											
SPTA1	6708	broad.mit.edu	37	chr1	158631133	158631133	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgaatgcgtggttcatggCtggcaatgttctccaggatg	13	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158631133	T	T	158631133	3	4	57	1	0	0	0	0	1	0	0	0	15234	797	28	4	4868	4	SPTA1	1	158631133	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12952	158631133	90619488	109	63098											
MNDA	4332	broad.mit.edu	37	chr1	158813749	158813749	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attaaactactttcagaaaaGaaaaactccaaacaaagaaa	3	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158813749	C	C	158813749	3	2	57	1	0	0	0	0	1	0	0	0	9770	942	33	4	417	4	MNDA	1	158813749	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	182616	158813749	90436872	110	63099											
CADM3	57863	broad.mit.edu	37	chr1	159163362	159163362	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactccacggtgagtacctcCtgccttggggttacaggaga	12	11	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159163362	T	T	159163362	1	4	57	0	1	0	0	0	0	0	0	0	2594	696	24	4		4	CADM3	1	159163362	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	349613	159163362	90087259	111	63100											
FCRL6	343413	broad.mit.edu	37	chr1	159778348	159778348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggctgcccctcatgctgGgccaatgtgtggggccccga	14	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159778348	T	T	159778348	1	4	57	0	1	0	0	0	0	0	0	0	5856	1247	43	2		2	FCRL6	1	159778348	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	614986	159778348	89472273	112	63101											
CCDC19	25790	broad.mit.edu	37	chr1	159846266	159846266	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcatctgttaacatgccaGaaagcttctctctatccaat	6	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159846266	T	T	159846266	1	4	57	0	1	0	0	0	0	0	0	0	2822	957	33	3		3	CCDC19	1	159846266	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	67918	159846266	89404355	113	63102											
ATP1A2	477	broad.mit.edu	37	chr1	160104464	160104464	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaacacgtcctcttgcacaGaaggcttgggtgtcccctgg	11	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160104464	C	C	160104464	1	2	57	0	1	0	0	0	0	0	0	0	1133	957	33	4		4	ATP1A2	1	160104464	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	258198	160104464	89146157	114	63103											
ATP1A2	477	broad.mit.edu	37	chr1	160104888	160104888	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagggggcaggaggggctgGtacaggtgccaggggtcagc	22	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160104888	C	C	160104888	1	2	57	0	1	0	0	0	0	0	0	0	1133	1276	44	4		4	ATP1A2	1	160104888	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	424	160104888	89145733	115	63104											
FCGR2A	2212	broad.mit.edu	37	chr1	161475672	161475672	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatcttgagatgggtcctgGagaaggaagagcccaagctc	15	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161475672	A	A	161475672	1	1	57	0	1	0	0	0	0	0	0	0	5838	1189	41	4		4	FCGR2A	1	161475672	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1370784	161475672	87774949	116	63105											
OLFML2B	25903	broad.mit.edu	37	chr1	161953395	161953395	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacatacccacctacacacaCgtgcgcgcacacacatacac	4	19	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161953395	G	G	161953395	1	3	57	0	1	0	0	0	0	0	0	0	10953	551	19	4		4	OLFML2B	1	161953395	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	477723	161953395	87297226	117	63106											
NUF2	83540	broad.mit.edu	37	chr1	163318648	163318649	+	Intron	DNP	GG	TT	TT													tttgtcaaatactgacacatGgtcactttggaatcaaaact					rs113811450		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	163318649	TT	TT	163318648	1	4	57	0	1	0	0	0	0	0	0	0	10842	1363	47	2		2	NUF2	1	163318648	Intron	DNP	GG	TCGA-17-Z026-01A-01W-0746-08	1365253	163318648	85931973	118	63107											
NUF2	83540	broad.mit.edu	37	chr1	163325229	163325229	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgagaagacagctgaactGaagaggaagatgttcaaaat	12	4	1	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163325229	A	A	163325229	2	1	57	1	0	0	0	0	0	0	0	1	10842	1277	45	4		4	NUF2	1	163325229	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6581	163325229	85925392	119	63108											
LMX1A	4009	broad.mit.edu	37	chr1	165173117	165173117	+	Nonstop_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaactctaggggaagacTcaagatgtgaagtaagaatt	11	5	2	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165173117	C	C	165173117	4	2	57	1	0	0	0	0	0	0	0	0	8935	1564	54	5	3	5	LMX1A	1	165173117	Nonstop_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1847888	165173117	84077504	120	63109											
ILDR2	387597	broad.mit.edu	37	chr1	166904754	166904754	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagagagattacgtcgtcCcaccctccacaaccctcaca	6	17	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166904754	T	T	166904754	1	4	57	0	1	0	0	0	0	0	0	0	7780	638	22	4		4	ILDR2	1	166904754	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1731637	166904754	82345867	121	63110											
GPA33	10223	broad.mit.edu	37	chr1	167026683	167026683	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtggttacacgccatcCctaagagacgctctaaattg	9	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167026683	G	G	167026683	1	3	57	0	1	0	0	0	0	0	0	0	6651	638	22	4		4	GPA33	1	167026683	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	121929	167026683	82223938	122	63111											
GPA33	10223	broad.mit.edu	37	chr1	167054397	167054397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactaaagctttggaggtGgaggtggatgtagagtgaca	16	4	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167054397	T	T	167054397	1	4	57	0	1	0	0	0	0	0	0	0	6651	1363	47	2		2	GPA33	1	167054397	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	27714	167054397	82196224	123	63112											
C1orf114	57821	broad.mit.edu	37	chr1	169390792	169390792	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgcggttgagtggtggctGagcgatataagccagcggct	16	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169390792	A	A	169390792	4	1	57	1	0	0	0	0	0	1	0	0	2007	1299	45	4	665	4	C1orf114	1	169390792	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2336395	169390792	79859829	124	63113											
KIFAP3	22920	broad.mit.edu	37	chr1	170004721	170004721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaggagaggtaccgaaaCgatcattctccttgctctgg	10	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170004721	T	T	170004721	1	4	57	0	1	0	0	0	0	0	0	0	8381	551	19	4		4	KIFAP3	1	170004721	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	613929	170004721	79245900	125	63114											
C1orf129	80133	broad.mit.edu	37	chr1	170964571	170964571	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgcctcttggttcctaCaggaaagcggtggcccagta	11	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170964571	A	A	170964571	4	1	57	1	0	0	0	0	0	1	0	0	2016	489	17	3	1282	3	C1orf129	1	170964571	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	959850	170964571	78286050	126	63115											
C1orf129	80133	broad.mit.edu	37	chr1	170965731	170965731	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaatgaaggagaatttctGggaccagttatctgaagatc	10	6	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170965731	A	A	170965731	4	1	57	1	0	0	0	0	0	1	0	0	2016	1357	47	4	1471	4	C1orf129	1	170965731	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1160	170965731	78284890	127	63116											
BAT2L2	23215	broad.mit.edu	37	chr1	171553404	171553404	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaggaaacatttttaaaaGaaaacatgttagaagatgca	7	3	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171553404	C	C	171553404	1	2	57	0	1	0	0	0	0	0	0	0	1326	957	33	4		4	BAT2L2	1	171553404	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	587673	171553404	77697217	128	63117											
VAMP4	8674	broad.mit.edu	37	chr1	171678786	171678786	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgaccagtctatccagTagcttctgatttacttactt	6	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171678786	A	A	171678786	1	1	57	0	1	0	0	0	0	0	0	0	17242	1653	57	5		5	VAMP4	1	171678786	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	125382	171678786	77571835	129	63118											
DNM3	26052	broad.mit.edu	37	chr1	172348136	172348136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatatgagataatccatGgtttgttttctcttctttta	7	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172348136	T	T	172348136	1	4	57	0	1	0	0	0	0	0	0	0	4713	1363	47	2		2	DNM3	1	172348136	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	669350	172348136	76902485	130	63119											
C1orf9	51430	broad.mit.edu	37	chr1	172520571	172520571	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcaaattctagcccatataGaaatatgttgacttaacaac	4	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172520571	C	C	172520571	1	2	57	0	1	0	0	0	0	0	0	0	2089	957	33	4		4	C1orf9	1	172520571	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	172435	172520571	76730050	131	63120											
SERPINC1	462	broad.mit.edu	37	chr1	173881236	173881236	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacatgctggtcagtctctGactaatagccacctcagttg	9	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173881236	C	C	173881236	1	2	57	0	1	0	0	0	0	0	0	0	14222	1305	45	4		4	SERPINC1	1	173881236	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1360665	173881236	75369385	132	63121											
SERPINC1	462	broad.mit.edu	37	chr1	173883944	173883944	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggggagcggtaaatgcacAtgggattcatgggaatgtcc	15	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173883944	T	T	173883944	3	4	57	1	0	0	0	0	1	0	0	0	14222	217	8	5	1263	5	SERPINC1	1	173883944	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2708	173883944	75366677	133	63122											
CACYBP	27101	broad.mit.edu	37	chr1	174973839	174973839	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttacagctgaaaaatccaaGattgagacagaaatcaagaa	7	7	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174973839	T	T	174973839	3	4	57	1	0	0	0	0	1	0	0	0	2590	933	33	3	111	3	CACYBP	1	174973839	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1089895	174973839	74276782	134	63123											
TNR	7143	broad.mit.edu	37	chr1	175348666	175348667	+	Intron	DNP	CC	AG	AG													actcagcaaccagcataaccCcaagagataggtcttactca					rs3737930	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	175348667	AG	AG	175348666	1	1	57	0	1	0	0	0	0	0	0	0	16461	638	22	2		2	TNR	1	175348666	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	374827	175348666	73901955	135	63124											
PAPPA2	60676	broad.mit.edu	37	chr1	176740406	176740406	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatctctctttacctgcaggGctatattctccagtcatgac	6	12	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176740406	C	C	176740406	1	2	57	0	1	0	0	0	0	0	0	0	11527	1218	42	4		4	PAPPA2	1	176740406	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1391740	176740406	72510215	136	63125											
PAPPA2	60676	broad.mit.edu	37	chr1	176801619	176801619	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcctcagcctcccaagtaGatgggattacaggcgtgtgc	12	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176801619	C	C	176801619	1	2	57	0	1	0	0	0	0	0	0	0	11527	957	33	4		4	PAPPA2	1	176801619	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	61213	176801619	72449002	137	63126											
ASTN1	460	broad.mit.edu	37	chr1	176857156	176857156	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctttgcaaatagtagacGctcattatctgtttccagag	7	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176857156	C	C	176857156	1	2	57	0	1	0	0	0	0	0	0	0	1068	1102	38	4		4	ASTN1	1	176857156	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	55537	176857156	72393465	138	63127											
ASTN1	460	broad.mit.edu	37	chr1	176934242	176934242	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaggaaagtcagttcggggGaagcggaacacagggtttgc	16	7	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176934242	T	T	176934242	1	4	57	0	1	0	0	0	0	0	0	0	1068	1189	41	3		3	ASTN1	1	176934242	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	77086	176934242	72316379	139	63128											
ASTN1	460	broad.mit.edu	37	chr1	176954135	176954135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacaaagctctccctccCcacaggactcaagcccagct	5	20	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176954135	A	A	176954135	1	1	57	0	1	0	0	0	0	0	0	0	1068	638	22	2		2	ASTN1	1	176954135	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	19893	176954135	72296486	140	63129											
ASTN1	460	broad.mit.edu	37	chr1	176992827	176992827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagagatcctaactctcaCcattcctagcccatcattag	4	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176992827	A	A	176992827	1	1	57	0	1	0	0	0	0	0	0	0	1068	522	18	3		3	ASTN1	1	176992827	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	38692	176992827	72257794	141	63130											
ASTN1	460	broad.mit.edu	37	chr1	177001570	177001570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaggaccaaacagcccCttgcctttctcccatcccca	6	17	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177001570	A	A	177001570	1	1	57	0	1	0	0	0	0	0	0	0	1068	696	24	2		2	ASTN1	1	177001570	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8743	177001570	72249051	142	63131											
RASAL2	9462	broad.mit.edu	37	chr1	178414924	178414924	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgactcaggtgttaaggTttgaatcatggctgtaagaa	12	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178414924	C	C	178414924	1	2	57	0	1	0	0	0	0	0	0	0	13172	1740	60	5		5	RASAL2	1	178414924	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1413354	178414924	70835697	143	63132											
RASAL2	9462	broad.mit.edu	37	chr1	178423843	178423843	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaattctggaaagtaactAtagagtgatagcactcactc	8	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178423843	G	G	178423843	1	3	57	0	1	0	0	0	0	0	0	0	13172	464	16	5		5	RASAL2	1	178423843	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	8919	178423843	70826778	144	63133											
NPHS2	7827	broad.mit.edu	37	chr1	179526197	179526197	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgctcttcctctctagaaGaatttcagtgagggatcgat	10	8	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179526197	A	A	179526197	3	1	57	1	0	0	0	0	1	0	0	0	10678	942	33	4	464	4	NPHS2	1	179526197	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1102354	179526197	69724424	145	63134											
LHX4	89884	broad.mit.edu	37	chr1	180241234	180241234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggatctttcttgaggcCttggcaactccctcctgaac	11	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180241234	A	A	180241234	1	1	57	0	1	0	0	0	0	0	0	0	8845	696	24	2		2	LHX4	1	180241234	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	715037	180241234	69009387	146	63135											
XPR1	9213	broad.mit.edu	37	chr1	180775800	180775800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagccaaagtttataaGtagttgctatttttcttatt	5	5	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180775800	T	T	180775800	1	4	57	0	1	0	0	0	0	0	0	0	17578	1044	36	3		3	XPR1	1	180775800	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	534566	180775800	68474821	147	63136											
CACNA1E	777	broad.mit.edu	37	chr1	181727929	181727929	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtacctatgagctggccctGaagtacctgaatatcgcctt	9	11	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181727929	C	C	181727929	2	2	57	1	0	0	0	0	0	0	0	1	2568	1277	45	4		4	CACNA1E	1	181727929	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	952129	181727929	67522692	148	63137											
CACNA1E	777	broad.mit.edu	37	chr1	181741408	181741408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgctatgtggcccatcCcatcctacccctaaccctct	5	19	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181741408	A	A	181741408	1	1	57	0	1	0	0	0	0	0	0	0	2568	638	22	2		2	CACNA1E	1	181741408	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13479	181741408	67509213	149	63138											
CACNA1E	777	broad.mit.edu	37	chr1	181764222	181764222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctttcatcaggcagtgGgctcctgccctgatgcactt	10	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181764222	T	T	181764222	1	4	57	0	1	0	0	0	0	0	0	0	2568	1247	43	2		2	CACNA1E	1	181764222	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	22814	181764222	67486399	150	63139											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185270164	185270164	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accagatcgtgcgtactgcaTaggagacatgggcttttcga	12	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185270164	A	A	185270164	3	1	57	1	0	0	0	0	1	0	0	0	8000	1406	49	5	892	5	IVNS1ABP	1	185270164	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3505942	185270164	63980457	151	63140											
PRG4	10216	broad.mit.edu	37	chr1	186280779	186280779	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacttttaaagaattacactCagcattttcatttattattg	3	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186280779	G	G	186280779	1	3	57	0	1	0	0	0	0	0	0	0	12587	841	29	4		4	PRG4	1	186280779	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1010615	186280779	62969842	152	63141											
TPR	7175	broad.mit.edu	37	chr1	186291610	186291610	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggactatataaatatctgctCaagaaatgaattacttttac	5	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186291610	A	A	186291610	1	1	57	0	1	0	0	0	0	0	0	0	16540	841	29	3		3	TPR	1	186291610	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	10831	186291610	62959011	153	63142											
CFHR1	3078	broad.mit.edu	37	chr1	196794678	196794678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatataagccattttccCaggttcctacaggggaagtt	8	8	0	0	rs146147352		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196794678	A	A	196794678	3	1	57	1	0	0	0	0	1	0	0	0	3314	595	21	2	136	2	CFHR1	1	196794678	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	10503068	196794678	52455943	154	63143											
PTPRC	5788	broad.mit.edu	37	chr1	198723398	198723398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttttctttcttttatagGgatggatctcagcaaacggg	9	7	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198723398	T	T	198723398	3	4	57	1	0	0	0	0	1	0	0	0	12905	1246	43	2	3637	2	PTPRC	1	198723398	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1928720	198723398	50527223	155	63144											
CACNA1S	779	broad.mit.edu	37	chr1	201030974	201030974	+	Intron	DEL	G	-	-													tttgttggacgcctgccacaGgtagcagtagcaccgtgggg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201030974	-	-	201030974	6	5	57	0	1	1	0	1	0	0	0	0	2573	1015	35	0		0	CACNA1S	1	201030974	Intron	DEL	G	TCGA-17-Z026-01A-01W-0746-08	2307576	201030974	48219647	156	63145											
PPP1R12B	4660	broad.mit.edu	37	chr1	202509287	202509287	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgtcctctttatatacccGaagtaaagaattcactcgga	6	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202509287	T	T	202509287	1	4	57	0	1	0	0	0	0	0	0	0	12456	1073	37	3		3	PPP1R12B	1	202509287	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1478313	202509287	46741334	157	63146											
TMEM183A	92703	broad.mit.edu	37	chr1	202977009	202977009	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaagctttgcgcgagcCtttaaagactcatgccgcga	11	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202977009	T	T	202977009	1	4	57	0	1	0	0	0	0	0	0	0	16225	696	24	4		4	TMEM183A	1	202977009	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	467722	202977009	46273612	158	63147											
CHI3L1	1116	broad.mit.edu	37	chr1	203151968	203151968	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggcttcctttataaattCggccttcatttcctagatgg	8	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203151968	A	A	203151968	4	1	57	1	0	0	0	0	0	1	0	0	3371	893	31	3	693	3	CHI3L1	1	203151968	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	174959	203151968	46098653	159	63148											
BTG2	7832	broad.mit.edu	37	chr1	203274720	203274720	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagacctctcactgagccCgagccgcgcgcgacatgagc	12	17	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203274720	T	T	203274720	1	4	57	0	1	0	0	0	0	0	0	0	1564	667	23	4		4	BTG2	1	203274720	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	122752	203274720	45975901	160	63149											
SLC26A9	115019	broad.mit.edu	37	chr1	205886345	205886345	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagtgaacgccttgtatttGacagcgaccccatccttccc	8	14	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205886345	C	C	205886345	1	2	57	0	1	0	0	0	0	0	0	0	14638	1305	45	4		4	SLC26A9	1	205886345	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2611625	205886345	43364276	161	63150											
SRGAP2	23380	broad.mit.edu	37	chr1	206619503	206619503	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcgctaatgtcagtgccaGagggccacgaccaggtgtcc	12	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206619503	C	C	206619503	3	2	57	1	0	0	0	0	1	0	0	0	15264	943	33	4	1755	4	SRGAP2	1	206619503	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	733158	206619503	42631118	162	63151											
PIGR	5284	broad.mit.edu	37	chr1	207107855	207107855	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccacaccagtaccagccctCatcagccctggtcaccaggt	7	18	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207107855	T	T	207107855	3	4	57	1	0	0	0	0	1	0	0	0	11992	835	29	4	703	4	PIGR	1	207107855	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	488352	207107855	42142766	163	63152											
CR1	1378	broad.mit.edu	37	chr1	207785242	207785242	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattgctctgttttccccttCacatggaggacttactcctg	8	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207785242	T	T	207785242	1	4	57	0	1	0	0	0	0	0	0	0	3872	841	29	4		4	CR1	1	207785242	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	677387	207785242	41465379	164	63153											
CR1	1378	broad.mit.edu	37	chr1	207791567	207791567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtacagaccagggaatctgGagccaattggatcattattg	11	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207791567	T	T	207791567	3	4	57	1	0	0	0	0	1	0	0	0	3872	1183	41	3	7207	3	CR1	1	207791567	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6325	207791567	41459054	165	63154											
CR1L	1379	broad.mit.edu	37	chr1	207851643	207851643	+	Splice_Site	SNP	G	T	T													aaatattcttgtcctaaaggGtgagttggcatctcttgaac							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207851643	T	T	207851643	5	4	57	1	0	0	0	0	0	0	1	0	3873	1275	44	3	388	3	CR1L	1	207851643	Splice_Site	SNP	G	TCGA-17-Z026-01A-01W-0746-08	60076	207851643	41398978	166	63155	291	2									
CR1L	1379	broad.mit.edu	37	chr1	207851647	207851647	+	Intron	SNP	G	T	T													attcttgtcctaaagggtgaGttggcatctcttgaaccaac							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207851647	T	T	207851647	1	4	57	0	1	0	0	0	0	0	0	0	3873	1044	36	3		3	CR1L	1	207851647	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4	207851647	41398974	167	63156	291	2									
LAMB3	3914	broad.mit.edu	37	chr1	209800173	209800173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccacccgcgtgctcggcCcccagagcctcagcgtcccc	10	22	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209800173	A	A	209800173	1	1	57	0	1	0	0	0	0	0	0	0	8684	638	22	2		2	LAMB3	1	209800173	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1948526	209800173	39450448	168	63157											
KCNK2	3776	broad.mit.edu	37	chr1	215345456	215345456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcaaacacatagaaggctgGagtgccctggacgccattta	10	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215345456	T	T	215345456	3	4	57	1	0	0	0	0	1	0	0	0	8136	1183	41	3	814	3	KCNK2	1	215345456	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5545283	215345456	33905165	169	63158											
USH2A	7399	broad.mit.edu	37	chr1	216495260	216495260	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagctctcctgggagcagaGgcatctatatggctggcttg	14	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216495260	A	A	216495260	3	1	57	1	0	0	0	0	1	0	0	0	17162	1000	35	4	14269	4	USH2A	1	216495260	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1149804	216495260	32755361	170	63159											
SPATA17	128153	broad.mit.edu	37	chr1	217934704	217934704	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgcactcttgttgttttCtgagaatgccttgccacacc	7	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217934704	T	T	217934704	1	4	57	0	1	0	0	0	0	0	0	0	15118	928	32	4		4	SPATA17	1	217934704	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1439444	217934704	31315917	171	63160											
EPRS	2058	broad.mit.edu	37	chr1	220152160	220152160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggctatattattaacaCgaatcagctgtgtgatttct	8	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220152160	A	A	220152160	1	1	57	0	1	0	0	0	0	0	0	0	5233	551	19	3		3	EPRS	1	220152160	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2217456	220152160	29098461	172	63161											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220427241	220427241	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaaatgttgaagtgaaaacGaaaaagaacaaacagaaaac	7	4	0	4	rs3211125		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220427241	A	A	220427241	1	1	57	0	1	0	0	0	0	0	0	0	13044	1073	37	4		4	RAB3GAP2	1	220427241	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	275081	220427241	28823380	173	63162											
MARK1	4139	broad.mit.edu	37	chr1	220800172	220800172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actccatctcaaaaaaaaaaAaaaagggttgaggggggcat	10	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220800172	G	G	220800172	1	3	57	0	1	0	0	0	0	0	0	0	9404	29	1	5		5	MARK1	1	220800172	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	372931	220800172	28450449	174	63163											
CAPN2	824	broad.mit.edu	37	chr1	223940694	223940694	+	Intron	DEL	G	-	-													tataagggctgttgcaatgcGgggccaccaaaggccaaagc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	223940694	-	-	223940694	6	5	57	0	1	1	0	1	0	0	0	0	2653	1131	39	0		0	CAPN2	1	223940694	Intron	DEL	G	TCGA-17-Z026-01A-01W-0746-08	3140522	223940694	25309927	175	63164											
TP53BP2	7159	broad.mit.edu	37	chr1	224009297	224009297	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacccttggtgaccctagaaTacagtcacatcagttcaaat	6	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224009297	A	A	224009297	1	1	57	0	1	0	0	0	0	0	0	0	16508	1421	49	5		5	TP53BP2	1	224009297	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	68603	224009297	25241324	176	63165											
OBSCN	84033	broad.mit.edu	37	chr1	228509487	228509487	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagtttggccaggtgacccAcagtgcctgtgtggtggtca	14	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228509487	T	T	228509487	3	4	57	1	0	0	0	0	1	0	0	0	10907	159	6	5	15159	5	OBSCN	1	228509487	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	4500190	228509487	20741134	177	63166											
OBSCN	84033	broad.mit.edu	37	chr1	228550383	228550383	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctcactggccctggcccCtgccccaggggggcacccgc	13	20	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228550383	T	T	228550383	2	4	57	1	0	0	0	0	0	0	0	1	10907	668	24	4		4	OBSCN	1	228550383	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	40896	228550383	20700238	178	63167											
ACTA1	58	broad.mit.edu	37	chr1	229568719	229568719	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgagccggctccctctgcgGaggggcagcctgacctggtg	16	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229568719	A	A	229568719	1	1	57	0	1	0	0	0	0	0	0	0	191	1189	41	4		4	ACTA1	1	229568719	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1018336	229568719	19681902	179	63168											
URB2	9816	broad.mit.edu	37	chr1	229783448	229783448	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgctggagtatggaagcgtCttcccgaggctgcacaacgt	13	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229783448	T	T	229783448	2	4	57	1	0	0	0	0	0	0	0	1	17151	900	32	4		4	URB2	1	229783448	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	214729	229783448	19467173	180	63169											
GALNT2	2590	broad.mit.edu	37	chr1	230391037	230391037	+	Frame_Shift_Del	DEL	C	-	-													agccgtgtgggacacgtgttCcggaagcagcacccctacac							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	230391037	-	-	230391037	7	5	57	1	0	1	0	1	0	0	0	0	6275	854	30	0	1125	0	GALNT2	1	230391037	Frame_Shift_Del	DEL	C	TCGA-17-Z026-01A-01W-0746-08	607589	230391037	18859584	181	63170											
PGBD5	79605	broad.mit.edu	37	chr1	230459397	230459397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaataagaacggctgacCcgatggttcatggcacccgg	14	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230459397	A	A	230459397	1	1	57	0	1	0	0	0	0	0	0	0	11879	638	22	2		2	PGBD5	1	230459397	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	68360	230459397	18791224	182	63171											
PGBD5	79605	broad.mit.edu	37	chr1	230486863	230486863	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagggaaaaagcagaggCtctcacggaaggcagcatga	15	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230486863	T	T	230486863	1	4	57	0	1	0	0	0	0	0	0	0	11879	812	28	4		4	PGBD5	1	230486863	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	27466	230486863	18763758	183	63172											
PCNXL2	80003	broad.mit.edu	37	chr1	233353742	233353742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggctacattagtgacagCacacgctactggtaagaatt	9	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233353742	A	A	233353742	1	1	57	0	1	0	0	0	0	0	0	0	11686	725	25	3		3	PCNXL2	1	233353742	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2866879	233353742	15896879	184	63173											
SLC35F3	148641	broad.mit.edu	37	chr1	234245859	234245860	+	Intron	INS	-	GAG	GAG													ggagctcaagctagagaattINSgagaaggtggagaaaaggga					rs144122757	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAG	234245860	GAG	GAG	234245859	6	5	57	0	1	1	1	0	0	0	0	0	14704	1827	63	0		0	SLC35F3	1	234245859	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	892117	234245859	15004762	185	63174											
ARID4B	51742	broad.mit.edu	37	chr1	235383692	235383692	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcttggtattatattcctCtcctcctccatctttatttc	2	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235383692	T	T	235383692	2	4	57	1	0	0	0	0	0	0	0	1	922	912	32	4		4	ARID4B	1	235383692	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1137833	235383692	13866929	186	63175											
B3GALNT2	148789	broad.mit.edu	37	chr1	235613469	235613469	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggactcctcagacttgcactCagattatcgtttgcctgccc	8	14	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235613469	G	G	235613469	1	3	57	0	1	0	0	0	0	0	0	0	1251	841	29	4		4	B3GALNT2	1	235613469	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	229777	235613469	13637152	187	63176											
LYST	1130	broad.mit.edu	37	chr1	235950676	235950676	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaatccatgcacacactAcagaaaaagagaaaaggcat	7	8	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235950676	G	G	235950676	1	3	57	0	1	0	0	0	0	0	0	0	9216	406	14	5		5	LYST	1	235950676	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	337207	235950676	13299945	188	63177											
ACTN2	88	broad.mit.edu	37	chr1	236918233	236918233	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcctagcatcccatgcaGggtctggaacggcgcctcgt	13	14	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236918233	A	A	236918233	1	1	57	0	1	0	0	0	0	0	0	0	205	1015	35	4		4	ACTN2	1	236918233	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	967557	236918233	12332388	189	63178											
MTR	4548	broad.mit.edu	37	chr1	237016121	237016121	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttatgctgtaactacaaAgttgagtagctgtgacagag	10	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237016121	T	T	237016121	1	4	57	0	1	0	0	0	0	0	0	0	10052	87	3	5		5	MTR	1	237016121	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	97888	237016121	12234500	190	63179											
MTR	4548	broad.mit.edu	37	chr1	237026645	237026645	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtctgtctttgaggtgctCttggttgtattgaattgctt	12	5	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237026645	G	G	237026645	1	3	57	0	1	0	0	0	0	0	0	0	10052	928	32	4		4	MTR	1	237026645	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	10524	237026645	12223976	191	63180											
MTR	4548	broad.mit.edu	37	chr1	237026667	237026667	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttgtattgaattgctttCtgtgctggcccctgcctggc	12	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237026667	T	T	237026667	1	4	57	0	1	0	0	0	0	0	0	0	10052	928	32	4		4	MTR	1	237026667	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	22	237026667	12223954	192	63181											
RYR2	6262	broad.mit.edu	37	chr1	237906994	237906994	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgacatttacctttgttaGacccaacatcttggattctt	6	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237906994	T	T	237906994	1	4	57	0	1	0	0	0	0	0	0	0	13880	957	33	3		3	RYR2	1	237906994	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	880327	237906994	11343627	193	63182											
CHRM3	1131	broad.mit.edu	37	chr1	240071237	240071237	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttatgaatcttctggtcatCagctttgacagatacttttc	7	8	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240071237	A	A	240071237	2	1	57	1	0	0	0	0	0	0	0	1	3409	816	29	3		3	CHRM3	1	240071237	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2164243	240071237	9179384	194	63183											
FMN2	56776	broad.mit.edu	37	chr1	240308029	240308029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcaatgtccttctccaGcatgtccacctgctcaattt	4	15	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240308029	T	T	240308029	1	4	57	0	1	0	0	0	0	0	0	0	6008	986	34	3		3	FMN2	1	240308029	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	236792	240308029	8942592	195	63184											
RGS7	6000	broad.mit.edu	37	chr1	240933569	240933569	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagaacaacaatagtaaCaatgaagtcaaaatctgtta	5	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240933569	A	A	240933569	1	1	57	0	1	0	0	0	0	0	0	0	13419	493	17	3		3	RGS7	1	240933569	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	625540	240933569	8317052	196	63185											
RGS7	6000	broad.mit.edu	37	chr1	240933890	240933890	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaacagatactcccataacAggtactgattttaccaacca	5	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240933890	T	T	240933890	1	4	57	0	1	0	0	0	0	0	0	0	13419	203	7	5		5	RGS7	1	240933890	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	321	240933890	8316731	197	63186											
RGS7	6000	broad.mit.edu	37	chr1	241083184	241083184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatggaaggccacacaagGtggatgggagagttgtggaa	17	4	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241083184	T	T	241083184	1	4	57	0	1	0	0	0	0	0	0	0	13419	1276	44	3		3	RGS7	1	241083184	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	149294	241083184	8167437	198	63187											
WDR64	128025	broad.mit.edu	37	chr1	241904851	241904851	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacatgtatcctttgactaGgatgatacaagatacaaaac	8	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241904851	C	C	241904851	3	2	57	1	0	0	0	0	1	0	0	0	17442	1000	35	4	1367	4	WDR64	1	241904851	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	821667	241904851	7345770	199	63188											
EXO1	9156	broad.mit.edu	37	chr1	242045269	242045269	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaagtgaccagacctccAagctacgtttatctcatttc	6	12	2	2	rs111708150		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242045269	C	C	242045269	3	2	57	1	0	0	0	0	1	0	0	0	5342	131	5	5	2203	5	EXO1	1	242045269	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	140418	242045269	7205352	200	63189											
SDCCAG8	10806	broad.mit.edu	37	chr1	243430955	243430956	+	Intron	INS	-	AA	AA													gtgggcacaatgtaacacttINSacacacacttaggctgagtt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	243430956	AA	AA	243430955	6	5	57	0	1	1	1	0	0	0	0	0	14072	1769	61	0		0	SDCCAG8	1	243430955	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	1385686	243430955	5819666	201	63190											
AKT3	10000	broad.mit.edu	37	chr1	244006636	244006636	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccattcttgcaactcacaGagcaataacaaacaactaat	3	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244006636	A	A	244006636	1	1	57	0	1	0	0	0	0	0	0	0	481	957	33	4		4	AKT3	1	244006636	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	575681	244006636	5243985	202	63191											
PPPDE1	51029	broad.mit.edu	37	chr1	244857804	244857804	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttcacggaatctgtgcctGaatctgcggtctacaatttt	8	11	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244857804	A	A	244857804	1	1	57	0	1	0	0	0	0	0	0	0	12509	1305	45	4		4	PPPDE1	1	244857804	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	851168	244857804	4392817	203	63192											
NLRP3	114548	broad.mit.edu	37	chr1	247587214	247587214	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattgaagacaggaatgccCgtctgggtgagagtgtgagc	16	7	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247587214	T	T	247587214	3	4	57	1	0	0	0	0	1	0	0	0	10573	652	23	4	479	4	NLRP3	1	247587214	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2729410	247587214	1663407	204	63193											
OR2W5	441932	broad.mit.edu	37	chr1	247655069	247655069	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctggtgccgctctccctCatcctcatctcctatggcgt	7	18	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247655069	A	A	247655069	3	1	57	1	0	0	0	0	1	0	0	0	11128	826	29	3	642	3	OR2W5	1	247655069	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	67855	247655069	1595552	205	63194											
OR2C3	81472	broad.mit.edu	37	chr1	247695436	247695436	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatggagtggcctgcagatGgcagcgtagcggtcatagga	16	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695436	T	T	247695436	2	4	57	1	0	0	0	0	0	0	0	1	11087	1335	47	2		2	OR2C3	1	247695436	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	40367	247695436	1555185	206	63195											
C1orf150	148823	broad.mit.edu	37	chr1	247726816	247726816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttaggttaagggcaacCaaatgctttttttgaaaggc	11	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247726816	A	A	247726816	1	1	57	0	1	0	0	0	0	0	0	0	2024	609	21	2		2	C1orf150	1	247726816	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	31380	247726816	1523805	207	63196											
C1orf150	148823	broad.mit.edu	37	chr1	247737459	247737459	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggaaaacgagaatggCagtggttctgaagaagtgtg	16	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247737459	A	A	247737459	2	1	57	1	0	0	0	0	0	0	0	1	2024	697	25	3		3	C1orf150	1	247737459	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	10643	247737459	1513162	208	63197											
OR2G2	81470	broad.mit.edu	37	chr1	247752138	247752138	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtggaatagccaccacCctggtacagtccaccctcac	7	17	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247752138	A	A	247752138	2	1	57	1	0	0	0	0	0	0	0	1	11092	610	22	2		2	OR2G2	1	247752138	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	14679	247752138	1498483	209	63198											
OR13G1	441933	broad.mit.edu	37	chr1	247835855	247835855	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtttggcccacagaaagtCaacctcatgataagagctgt	10	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247835855	A	A	247835855	3	1	57	1	0	0	0	0	1	0	0	0	11036	825	29	3	438	3	OR13G1	1	247835855	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	83717	247835855	1414766	210	63199											
OR6F1	343169	broad.mit.edu	37	chr1	247875436	247875436	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatgaggcatgaactcaGgataaccacaacagcaatca	10	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875436	A	A	247875436	2	1	57	1	0	0	0	0	0	0	0	1	11295	991	35	4		4	OR6F1	1	247875436	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	39581	247875436	1375185	211	63200											
OR6F1	343169	broad.mit.edu	37	chr1	247875814	247875814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccccagtaggatggccaGtgctttgggcactgctgctg	13	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247875814	T	T	247875814	3	4	57	1	0	0	0	0	1	0	0	0	11295	1020	36	3	686	3	OR6F1	1	247875814	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	378	247875814	1374807	212	63201											
OR1C1	26188	broad.mit.edu	37	chr1	247921672	247921672	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctaggaagtcccagaaggaCgaattccctgacaactgtta	10	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921672	T	T	247921672	3	4	57	1	0	0	0	0	1	0	0	0	11046	536	19	4	909	4	OR1C1	1	247921672	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	45858	247921672	1328949	213	63202											
OR2L13	284521	broad.mit.edu	37	chr1	248099478	248099478	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgtgctccagagagtcttgGagcatgtcactcttcagacg	11	11	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248099478	T	T	248099478	1	4	57	0	1	0	0	0	0	0	0	0	11100	1189	41	3		3	OR2L13	1	248099478	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	177806	248099478	1151143	214	63203											
OR2L13	284521	broad.mit.edu	37	chr1	248166474	248166474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaactgatttcatcttactGgggctgttcccaccatcaag	7	12	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248166474	T	T	248166474	1	4	57	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248166474	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	66996	248166474	1084147	215	63204											
OR2L13	284521	broad.mit.edu	37	chr1	248246907	248246907	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttaaaatgttgataaattCaggaacttagagtcatttga	8	3	2	3	rs116725644	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248246907	A	A	248246907	1	1	57	0	1	0	0	0	0	0	0	0	11100	841	29	3		3	OR2L13	1	248246907	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	80433	248246907	1003714	216	63205											
OR2M5	127059	broad.mit.edu	37	chr1	248309355	248309355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggtgaccagagcactcagGaaagtgttaggaaagggcaa	15	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248309355	T	T	248309355	3	4	57	1	0	0	0	0	1	0	0	0	11107	1165	41	3	908	3	OR2M5	1	248309355	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	62448	248309355	941266	217	63206											
OR2M2	391194	broad.mit.edu	37	chr1	248343686	248343686	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaccctctaagatatacCaatctcatgaatcctaaaat	3	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343686	A	A	248343686	2	1	57	1	0	0	0	0	0	0	0	1	11104	581	21	2		2	OR2M2	1	248343686	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	34331	248343686	906935	218	63207											
OR2T12	127064	broad.mit.edu	37	chr1	248458930	248458930	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatagagaaagaagaggCttttatggtctgaataactg	10	3	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248458930	G	G	248458930	1	3	57	0	1	0	0	0	0	0	0	0	11113	812	28	4		4	OR2T12	1	248458930	5'Flank	SNP	C	TCGA-17-Z026-01A-01W-0746-08	115244	248458930	791691	219	63208											
OR2T1	26696	broad.mit.edu	37	chr1	248569465	248569465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaatggaagagtacaacaCatcctctacagacttcactt	5	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248569465	A	A	248569465	3	1	57	1	0	0	0	0	1	0	0	0	11110	478	17	3	172	3	OR2T1	1	248569465	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	110535	248569465	681156	220	63209											
OR2T34	127068	broad.mit.edu	37	chr1	248737473	248737473	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcttatagagggagacgtCagagcaggagagcttcagca	13	8	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248737473	T	T	248737473	3	4	57	1	0	0	0	0	1	0	0	0	11119	826	29	4	374	4	OR2T34	1	248737473	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	168008	248737473	513148	221	63210											
OR2T11	127077	broad.mit.edu	37	chr1	248789612	248789612	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgacaatggtatagaagGctgacactactttgtcctgc	11	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248789612	C	C	248789612	3	2	57	1	0	0	0	0	1	0	0	0	11112	1203	42	4	136	4	OR2T11	1	248789612	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	52139	248789612	461009	222	63211											
OR2T27	403239	broad.mit.edu	37	chr1	248813979	248813979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaaatatacaggatgtcCctgagggagagctggctgag	16	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248813979	A	A	248813979	3	1	57	1	0	0	0	0	1	0	0	0	11115	622	22	2	749	2	OR2T27	1	248813979	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	24367	248813979	436642	223	63212											
ZNF692	55657	broad.mit.edu	37	chr1	249149986	249149986	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgagctgtggctgcaccctGacttctgcaggtggaggagc	15	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249149986	A	A	249149986	2	1	57	1	0	0	0	0	0	0	0	1	18224	1277	45	4		4	ZNF692	1	249149986	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	336007	249149986	100635	224	63213											
ADAM17	6868	broad.mit.edu	37	chr2	9661433	9661436	+	Frame_Shift_Del	DEL	TGAG	-	-													ttttacctcttgtggagactTgagaatgcgaatctatactt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9661436	-	-	9661433	7	5	57	1	0	1	0	1	0	0	0	0	238	1821	63	0	1666	0	ADAM17	2	9661433	Frame_Shift_Del	DEL	TGAG	TCGA-17-Z026-01A-01W-0746-08		9661433	233537940	225	63214											
C2orf48	348738	broad.mit.edu	37	chr2	10282292	10282292	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagtggtcagagcagagtGaggggtgggagatggggctg	23	3	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10282292	A	A	10282292	1	1	57	0	1	0	0	0	0	0	0	0	2192	1305	45	4		4	C2orf48	2	10282292	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	620859	10282292	232917081	226	63215											
GREB1	9687	broad.mit.edu	37	chr2	11716528	11716528	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaaaggcttctgttacttCacggaattctccaatcatat	6	9	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11716528	T	T	11716528	2	4	57	1	0	0	0	0	0	0	0	1	6826	825	29	4		4	GREB1	2	11716528	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1434236	11716528	231482845	227	63216											
GREB1	9687	broad.mit.edu	37	chr2	11774236	11774236	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtgtgtcagcctagggactCactctccctccttggagcag	11	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11774236	G	G	11774236	1	3	57	0	1	0	0	0	0	0	0	0	6826	841	29	4		4	GREB1	2	11774236	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	57708	11774236	231425137	228	63217											
NBAS	51594	broad.mit.edu	37	chr2	15608700	15608700	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaattacagaatccatgaCatcttacaacacattacaac	4	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15608700	T	T	15608700	1	4	57	0	1	0	0	0	0	0	0	0	10280	493	17	4		4	NBAS	2	15608700	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3834464	15608700	227590673	229	63218											
FAM49A	81553	broad.mit.edu	37	chr2	16787662	16787662	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcctttctctctctccAgtctctctctctcctcctcc	1	22	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16787662	T	T	16787662	1	4	57	0	1	0	0	0	0	0	0	0	5626	203	7	5		5	FAM49A	2	16787662	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1178962	16787662	226411711	230	63219											
SMC6	79677	broad.mit.edu	37	chr2	17897308	17897308	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgttctgaaaataaaaacTtatttctaaagtttattata	3	4	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17897308	C	C	17897308	1	2	57	0	1	0	0	0	0	0	0	0	14901	1624	56	5		5	SMC6	2	17897308	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1109646	17897308	225302065	231	63220											
KCNS3	3790	broad.mit.edu	37	chr2	18112229	18112229	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttccaggtgcagcctgatCttcctcttctcccttgccag	7	16	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18112229	T	T	18112229	1	4	57	0	1	0	0	0	0	0	0	0	8160	928	32	4		4	KCNS3	2	18112229	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	214921	18112229	225087144	232	63221											
MATN3	4148	broad.mit.edu	37	chr2	20205840	20205840	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgttgacaagggtgtgattCgacccacggcctgcttcagg	13	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20205840	T	T	20205840	3	4	57	1	0	0	0	0	1	0	0	0	9427	884	31	4	1033	4	MATN3	2	20205840	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2093611	20205840	222993533	233	63222											
C2orf43	60526	broad.mit.edu	37	chr2	20939690	20939690	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattgtgtaaacattttgtGatacaagaataaacatacac	6	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20939690	A	A	20939690	1	1	57	0	1	0	0	0	0	0	0	0	2189	1305	45	4		4	C2orf43	2	20939690	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	733850	20939690	222259683	234	63223											
APOB	338	broad.mit.edu	37	chr2	21225455	21225455	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctttaaatacctcttggGcttcttttgataaatctttc	6	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21225455	A	A	21225455	3	1	57	1	0	0	0	0	1	0	0	0	787	1203	42	4	856	4	APOB	2	21225455	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	285765	21225455	221973918	235	63224											
APOB	338	broad.mit.edu	37	chr2	21232021	21232021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgctttcatacgtttagcCcaatcttggatagaatattg	7	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21232021	A	A	21232021	3	1	57	1	0	0	0	0	1	0	0	0	787	624	22	2	5988	2	APOB	2	21232021	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6566	21232021	221967352	236	63225											
APOB	338	broad.mit.edu	37	chr2	21232396	21232396	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaatttcaccattgagtctCtgagtcacctcacggatttt	7	10	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21232396	A	A	21232396	3	1	57	1	0	0	0	0	1	0	0	0	787	912	32	3	6363	3	APOB	2	21232396	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	375	21232396	221966977	237	63226											
APOB	338	broad.mit.edu	37	chr2	21237475	21237475	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagctcattgcctacaaaatGacaggagatttttaaggtaa	9	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21237475	T	T	21237475	1	4	57	0	1	0	0	0	0	0	0	0	787	1305	45	3		3	APOB	2	21237475	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5079	21237475	221961898	238	63227											
APOB	338	broad.mit.edu	37	chr2	21255357	21255357	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtaggtgaccacatctatCagaagggggttggcatgcac	14	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21255357	T	T	21255357	2	4	57	1	0	0	0	0	0	0	0	1	787	813	29	4		4	APOB	2	21255357	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	17882	21255357	221944016	239	63228											
ADCY3	109	broad.mit.edu	37	chr2	25061436	25061436	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgcccccatcgcctggctCcacatcaaactcccctttca	5	20	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25061436	A	A	25061436	4	1	57	1	0	0	0	0	0	1	0	0	295	864	30	3	2083	3	ADCY3	2	25061436	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3806079	25061436	218137937	240	63229											
DNMT3A	1788	broad.mit.edu	37	chr2	25457219	25457219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacgctccatgaccggcCcagcagtctctgcctcgcca	10	18	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25457219	A	A	25457219	3	1	57	1	0	0	0	0	1	0	0	0	4716	623	22	2	74	2	DNMT3A	2	25457219	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	395783	25457219	217742154	241	63230											
DNMT3A	1788	broad.mit.edu	37	chr2	25470507	25470507	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgacccagcgggtgccttCagctgctcggctccggcccg	13	17	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25470507	T	T	25470507	3	4	57	1	0	0	0	0	1	0	0	0	4716	835	29	4	1835	4	DNMT3A	2	25470507	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13288	25470507	217728866	242	63231											
AGBL5	60509	broad.mit.edu	37	chr2	27275819	27275819	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggaggatgctttcccaGccccaccatggagctgcgct	13	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27275819	A	A	27275819	1	1	57	0	1	0	0	0	0	0	0	0	378	986	34	4		4	AGBL5	2	27275819	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1805312	27275819	215923554	243	63232											
C2orf16	84226	broad.mit.edu	37	chr2	27802077	27802077	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtctgggagagtcatgccTggaggcagcgactaccaaga	14	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27802077	A	A	27802077	3	1	57	1	0	0	0	0	1	0	0	0	2179	1580	55	5	2640	5	C2orf16	2	27802077	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	526258	27802077	215397296	244	63233											
PLB1	151056	broad.mit.edu	37	chr2	28763256	28763256	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccagagccctgtaattGctcagaggagaccacccggc	11	14	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28763256	A	A	28763256	3	1	57	1	0	0	0	0	1	0	0	0	12119	1319	46	4	801	4	PLB1	2	28763256	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	961179	28763256	214436117	245	63234											
PLB1	151056	broad.mit.edu	37	chr2	28829475	28829475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcctctccacaaaccaGggcacacagctcgccctacc	7	19	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28829475	T	T	28829475	1	4	57	0	1	0	0	0	0	0	0	0	12119	1015	35	2		2	PLB1	2	28829475	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	66219	28829475	214369898	246	63235											
ALK	238	broad.mit.edu	37	chr2	29448340	29448340	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcaccaatcatgatgccGgagaaagccaggaccagggc	11	13	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29448340	T	T	29448340	2	4	57	1	0	0	0	0	0	0	0	1	525	1103	39	1		1	ALK	2	29448340	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	618865	29448340	213751033	247	63236											
GALNT14	79623	broad.mit.edu	37	chr2	31215630	31215630	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcactggtgctgcatacaGcaggccccagatcaagcctg	11	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31215630	A	A	31215630	1	1	57	0	1	0	0	0	0	0	0	0	6274	986	34	4		4	GALNT14	2	31215630	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1767290	31215630	211983743	248	63237											
NLRC4	58484	broad.mit.edu	37	chr2	32475389	32475389	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtccgagaaggcagccgTgttgatacactgctgcgagg	14	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32475389	A	A	32475389	3	1	57	1	0	0	0	0	1	0	0	0	10564	1696	59	5	1554	5	NLRC4	2	32475389	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1259759	32475389	210723984	249	63238											
NLRC4	58484	broad.mit.edu	37	chr2	32476636	32476636	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaatcctgagccaaatcGtccaagtctccttctgatgt	6	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32476636	A	A	32476636	2	1	57	1	0	0	0	0	0	0	0	1	10564	1136	40	4		4	NLRC4	2	32476636	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1247	32476636	210722737	250	63239											
BIRC6	57448	broad.mit.edu	37	chr2	32613848	32613848	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacatttcatcttcctcatCatgtgttgaagtccattgcc	5	11	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32613848	T	T	32613848	3	4	57	1	0	0	0	0	1	0	0	0	1444	826	29	4	690	4	BIRC6	2	32613848	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	137212	32613848	210585525	251	63240											
BIRC6	57448	broad.mit.edu	37	chr2	32694488	32694488	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgttcctgcagttttgcaGagcacatttcatgcccaggc	9	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32694488	T	T	32694488	3	4	57	1	0	0	0	0	1	0	0	0	1444	933	33	3	6271	3	BIRC6	2	32694488	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	80640	32694488	210504885	252	63241											
TTC27	55622	broad.mit.edu	37	chr2	33037793	33037793	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaatagtatcaaattatttCattatattgacattgttgta	4	3	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33037793	T	T	33037793	1	4	57	0	1	0	0	0	0	0	0	0	16821	841	29	4		4	TTC27	2	33037793	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	343305	33037793	210161580	253	63242											
EIF2AK2	5610	broad.mit.edu	37	chr2	37366778	37366778	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaggcaatacgtaccactGaggtttcttctgataatatc	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37366778	A	A	37366778	3	1	57	1	0	0	0	0	1	0	0	0	5037	1294	45	4	1191	4	EIF2AK2	2	37366778	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4328985	37366778	205832595	254	63243											
PRKD3	23683	broad.mit.edu	37	chr2	37487372	37487372	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggagttaaaatacctgtgtGaccatgaatttagtaattcg	9	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37487372	A	A	37487372	2	1	57	1	0	0	0	0	0	0	0	1	12626	1277	45	4		4	PRKD3	2	37487372	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	120594	37487372	205712001	255	63244											
FAM82A1	151393	broad.mit.edu	37	chr2	38179277	38179277	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taacttcaggcctgtttgaaGatgaagactttgctgtcttg	10	7	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38179277	C	C	38179277	1	2	57	0	1	0	0	0	0	0	0	0	5683	942	33	4		4	FAM82A1	2	38179277	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	691905	38179277	205020096	256	63245											
ATL2	64225	broad.mit.edu	37	chr2	38542463	38542463	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcttcttgaatattctgaGacagattatatacctgttga	6	7	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38542463	C	C	38542463	3	2	57	1	0	0	0	0	1	0	0	0	1111	942	33	4	1282	4	ATL2	2	38542463	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	363186	38542463	204656910	257	63246											
SOS1	6654	broad.mit.edu	37	chr2	39249779	39249779	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgctttgataattggaattCcagccttgggctgcatgttc	10	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39249779	G	G	39249779	3	3	57	1	0	0	0	0	1	0	0	0	15050	855	30	4	2267	4	SOS1	2	39249779	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	707316	39249779	203949594	258	63247											
SLC8A1	6546	broad.mit.edu	37	chr2	40342375	40342375	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtatatatataaatttaCtatatctgatagttccttta	3	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40342375	A	A	40342375	1	1	57	0	1	0	0	0	0	0	0	0	14820	580	20	3		3	SLC8A1	2	40342375	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1092596	40342375	202856998	259	63248											
SLC8A1	6546	broad.mit.edu	37	chr2	40438529	40438529	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttttccaatagacagctaAaaatgtagacctgaagttta	7	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40438529	G	G	40438529	1	3	57	0	1	0	0	0	0	0	0	0	14820	29	1	5		5	SLC8A1	2	40438529	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	96154	40438529	202760844	260	63249											
THADA	63892	broad.mit.edu	37	chr2	43520107	43520107	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaacttttccaagagggcttCcagtgttagtgagcgcactt	11	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520107	T	T	43520107	3	4	57	1	0	0	0	0	1	0	0	0	15963	864	30	4	1205	4	THADA	2	43520107	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3081578	43520107	199679266	261	63250											
THADA	63892	broad.mit.edu	37	chr2	43793742	43793742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaacctcaaagaaaggCaacaaaactgaaacttcaaa	5	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43793742	A	A	43793742	1	1	57	0	1	0	0	0	0	0	0	0	15963	725	25	3		3	THADA	2	43793742	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	273635	43793742	199405631	262	63251											
SRBD1	55133	broad.mit.edu	37	chr2	45773989	45773989	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgctgcagcttcaaggcaGaaacagaatgacaaactgaa	10	8	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45773989	C	C	45773989	1	2	57	0	1	0	0	0	0	0	0	0	15251	957	33	4		4	SRBD1	2	45773989	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1980247	45773989	197425384	263	63252											
SRBD1	55133	broad.mit.edu	37	chr2	45801720	45801720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaaccgtgtgacccttaaCagcatgagtccataaagcag	8	11	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45801720	A	A	45801720	1	1	57	0	1	0	0	0	0	0	0	0	15251	493	17	3		3	SRBD1	2	45801720	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	27731	45801720	197397653	264	63253											
SRBD1	55133	broad.mit.edu	37	chr2	45801959	45801959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattaattccagtcaaaaTaaaaccttaagttgacagtc	4	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45801959	C	C	45801959	1	2	57	0	1	0	0	0	0	0	0	0	15251	1421	49	5		5	SRBD1	2	45801959	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	239	45801959	197397414	265	63254											
MSH2	4436	broad.mit.edu	37	chr2	47690168	47690168	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcactttgttctgtttgcAggtggaaaaccatgaattcc	9	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47690168	T	T	47690168	5	4	57	1	0	0	0	0	0	0	1	0	9964	202	7	5	1419	5	MSH2	2	47690168	Splice_Site	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1888209	47690168	195509205	266	63255											
MSH6	2956	broad.mit.edu	37	chr2	48027172	48027172	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgaattggccctctctgctCtaggtggttgtgtcttctac	11	10	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48027172	T	T	48027172	2	4	57	1	0	0	0	0	0	0	0	1	9968	912	32	4		4	MSH6	2	48027172	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	337004	48027172	195172201	267	63256											
FSHR	2492	broad.mit.edu	37	chr2	49210406	49210406	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcagacagcacaggttaGtggcataaagaaaatgccac	12	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49210406	A	A	49210406	1	1	57	0	1	0	0	0	0	0	0	0	6133	1044	36	4		4	FSHR	2	49210406	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1183234	49210406	193988967	268	63257											
FSHR	2492	broad.mit.edu	37	chr2	49217725	49217725	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaactttttggagagaAtgaatcttgtgaacatctgg	10	4	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49217725	T	T	49217725	3	4	57	1	0	0	0	0	1	0	0	0	6133	98	4	5	1685	5	FSHR	2	49217725	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	7319	49217725	193981648	269	63258											
FSHR	2492	broad.mit.edu	37	chr2	49295688	49295688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacatggctgatacatgaCagagatggaatatgaacctt	10	7	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49295688	A	A	49295688	1	1	57	0	1	0	0	0	0	0	0	0	6133	493	17	3		3	FSHR	2	49295688	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	77963	49295688	193903685	270	63259											
NRXN1	9378	broad.mit.edu	37	chr2	51254935	51254935	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcggcgcgcagttccggGggcagccccccgacgaaaag	16	16	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51254935	T	T	51254935	2	4	57	1	0	0	0	0	0	0	0	1	10760	1219	43	2		2	NRXN1	2	51254935	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1959247	51254935	191944438	271	63260											
PSME4	23198	broad.mit.edu	37	chr2	54152906	54152906	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatcaggtaactctctaTtgtcctaattattcaagtga	7	8	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54152906	C	C	54152906	1	2	57	0	1	0	0	0	0	0	0	0	12815	1508	52	5		5	PSME4	2	54152906	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2897971	54152906	189046467	272	63261											
SPTBN1	6711	broad.mit.edu	37	chr2	54853248	54853248	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgaggaaggacaatgtcatCcggctctgggaatacctact	12	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54853248	T	T	54853248	2	4	57	1	0	0	0	0	0	0	0	1	15237	845	30	4		4	SPTBN1	2	54853248	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	700342	54853248	188346125	273	63262											
SPTBN1	6711	broad.mit.edu	37	chr2	54856193	54856193	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagagtcccgccgcctctGgaagttcttctgggagatgg	15	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54856193	A	A	54856193	4	1	57	1	0	0	0	0	0	1	0	0	15237	1357	47	4	2085	4	SPTBN1	2	54856193	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2945	54856193	188343180	274	63263											
CCDC88A	55704	broad.mit.edu	37	chr2	55527035	55527035	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtggatgttctgccactatCaaggctggctggtcttgaag	13	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55527035	T	T	55527035	3	4	57	1	0	0	0	0	1	0	0	0	2891	826	29	4	866	4	CCDC88A	2	55527035	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	670842	55527035	187672338	275	63264											
BCL11A	53335	broad.mit.edu	37	chr2	60689368	60689368	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcaatatgaatcccatggaGaggtggctgggaaggacatt	14	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60689368	C	C	60689368	3	2	57	1	0	0	0	0	1	0	0	0	1368	942	33	4	1938	4	BCL11A	2	60689368	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5162333	60689368	182510005	276	63265											
USP34	9736	broad.mit.edu	37	chr2	61632995	61632995	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaagattcctcctcagtcaGattacaaattcttgtagagt	7	8	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61632995	C	C	61632995	3	2	57	1	0	0	0	0	1	0	0	0	17192	933	33	4	10552	4	USP34	2	61632995	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	943627	61632995	181566378	277	63266											
CCT4	10575	broad.mit.edu	37	chr2	62096610	62096610	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaatgctccgaacagtttCagttgcaagagtcagagcac	10	10	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62096610	T	T	62096610	3	4	57	1	0	0	0	0	1	0	0	0	2985	835	29	4	57	4	CCT4	2	62096610	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	463615	62096610	181102763	278	63267											
COMMD1	150684	broad.mit.edu	37	chr2	62362895	62362895	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgggaccctgggtattttGagtttggtcatgccagatgg	14	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62362895	C	C	62362895	1	2	57	0	1	0	0	0	0	0	0	0	3746	1305	45	4		4	COMMD1	2	62362895	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	266285	62362895	180836478	279	63268											
HSPC159	29094	broad.mit.edu	37	chr2	64682618	64682618	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctttttaaaattttattCatttgtttattgcattttcc	3	5	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64682618	T	T	64682618	1	4	57	0	1	0	0	0	0	0	0	0	7497	841	29	4		4	HSPC159	2	64682618	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2319723	64682618	178516755	280	63269											
PNO1	56902	broad.mit.edu	37	chr2	68389809	68389809	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgatgtgtaagtatctgatCttgagaaaattattgtcata	8	4	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68389809	G	G	68389809	1	3	57	0	1	0	0	0	0	0	0	0	12256	928	32	4		4	PNO1	2	68389809	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3707191	68389809	174809564	281	63270											
ARHGAP25	9938	broad.mit.edu	37	chr2	69040400	69040400	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaagagtttcacagagcGttgcttattttcttccagag	8	8	3	3	rs143939326	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69040400	A	A	69040400	1	1	57	0	1	0	0	0	0	0	0	0	876	1160	40	4		4	ARHGAP25	2	69040400	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	650591	69040400	174158973	282	63271											
ARHGAP25	9938	broad.mit.edu	37	chr2	69053210	69053210	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagtctgcagccctagagAtcagcctccgcaacatggag	11	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69053210	T	T	69053210	3	4	57	1	0	0	0	0	1	0	0	0	876	333	12	5	1907	5	ARHGAP25	2	69053210	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	12810	69053210	174146163	283	63272											
ANTXR1	84168	broad.mit.edu	37	chr2	69409681	69409681	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctaagttggaaaaggcaaaGaatgcaagagtcaagatgcc	12	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69409681	C	C	69409681	3	2	57	1	0	0	0	0	1	0	0	0	711	933	33	4	1381	4	ANTXR1	2	69409681	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	356471	69409681	173789692	284	63273											
SNRNP27	11017	broad.mit.edu	37	chr2	70121064	70121064	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcggcggtaaaagctcggttCccggccctcccggaagttgt	13	13	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70121064	T	T	70121064	1	4	57	0	1	0	0	0	0	0	0	0	14968	870	30	4		4	SNRNP27	2	70121064	5'Flank	SNP	C	TCGA-17-Z026-01A-01W-0746-08	711383	70121064	173078309	285	63274											
SNRNP27	11017	broad.mit.edu	37	chr2	70123542	70123542	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgatatgtctgtctgtttCtaacatctttgcttataaat	6	6	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70123542	T	T	70123542	1	4	57	0	1	0	0	0	0	0	0	0	14968	928	32	4		4	SNRNP27	2	70123542	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2478	70123542	173075831	286	63275											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71360143	71360143	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttgcaaaaacttgtgataGaaaattttgatgatgagcag	9	5	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71360143	C	C	71360143	3	2	57	1	0	0	0	0	1	0	0	0	9819	943	33	4	211	4	MPHOSPH10	2	71360143	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1236601	71360143	171839230	287	63276											
ZNF638	27332	broad.mit.edu	37	chr2	71625917	71625917	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacaggtaagactattgggGaggagagattttattgttta	12	2	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71625917	T	T	71625917	1	4	57	0	1	0	0	0	0	0	0	0	18182	1189	41	3		3	ZNF638	2	71625917	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	265774	71625917	171573456	288	63277											
DYSF	8291	broad.mit.edu	37	chr2	71791294	71791294	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcttctcccggcggggtgCcaactactgtggcaagaatt	11	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71791294	T	T	71791294	3	4	57	1	0	0	0	0	1	0	0	0	4899	739	26	4	2748	4	DYSF	2	71791294	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	165377	71791294	171408079	289	63278											
DYSF	8291	broad.mit.edu	37	chr2	71887922	71887922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatcttgcatgtctatggGggcatagcctcagttagccc	10	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71887922	T	T	71887922	1	4	57	0	1	0	0	0	0	0	0	0	4899	1247	43	2		2	DYSF	2	71887922	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	96628	71887922	171311451	290	63279											
EXOC6B	23233	broad.mit.edu	37	chr2	72968242	72968242	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactccgcctcaaaaaaaaaAgggggggtgggtattgtttt	13	6	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72968242	G	G	72968242	1	3	57	0	1	0	0	0	0	0	0	0	5351	87	3	5		5	EXOC6B	2	72968242	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1080320	72968242	170231131	291	63280											
SMYD5	10322	broad.mit.edu	37	chr2	73450603	73450603	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acactctggagttgaagcctCaggaccgtgagcagcttgac	12	11	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73450603	T	T	73450603	4	4	57	1	0	0	0	0	0	1	0	0	14939	827	29	4	860	4	SMYD5	2	73450603	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	482361	73450603	169748770	292	63281											
ALMS1	7840	broad.mit.edu	37	chr2	73659253	73659253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttattttcttcatttcttcGtaggtgggtcattctaatct	6	8	6	0	rs138395969	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73659253	T	T	73659253	1	4	57	0	1	0	0	0	0	0	0	0	535	1160	40	3		3	ALMS1	2	73659253	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	208650	73659253	169540120	293	63282											
ALMS1	7840	broad.mit.edu	37	chr2	73717355	73717355	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaattctcatttcactgaaGaacaaaatcctcccagagat	4	10	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73717355	T	T	73717355	4	4	57	1	0	0	0	0	0	1	0	0	535	943	33	3	8304	3	ALMS1	2	73717355	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	58102	73717355	169482018	294	63283											
C2orf78	388960	broad.mit.edu	37	chr2	74043093	74043093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaacagaaagaacagctcCaagaaatctgaagagagtaa	11	6	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74043093	A	A	74043093	2	1	57	1	0	0	0	0	0	0	0	1	2217	581	21	2		2	C2orf78	2	74043093	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	325738	74043093	169156280	295	63284											
ACTG2	72	broad.mit.edu	37	chr2	74143906	74143906	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatcaaggtgggtcttgcctCagttgtctccatcctgttct	10	11	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74143906	T	T	74143906	1	4	57	0	1	0	0	0	0	0	0	0	197	841	29	4		4	ACTG2	2	74143906	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	100813	74143906	169055467	296	63285											
MTHFD2	10797	broad.mit.edu	37	chr2	74435017	74435017	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctttccctctccctccctCtctctctccctccccatccc	0	26	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74435017	T	T	74435017	1	4	57	0	1	0	0	0	0	0	0	0	10023	928	32	4		4	MTHFD2	2	74435017	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	291111	74435017	168764356	297	63286											
SLC4A5	57835	broad.mit.edu	37	chr2	74474317	74474317	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggagaagccctcctcggtGaagcgggtgatatatttgat	14	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74474317	T	T	74474317	3	4	57	1	0	0	0	0	1	0	0	0	14771	1281	45	3	1560	3	SLC4A5	2	74474317	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	39300	74474317	168725056	298	63287											
DCTN1	1639	broad.mit.edu	37	chr2	74592873	74592873	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgagatagtaggttccctGagggctcaccacagctccca	10	13	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74592873	C	C	74592873	1	2	57	0	1	0	0	0	0	0	0	0	4339	1305	45	4		4	DCTN1	2	74592873	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	118556	74592873	168606500	299	63288											
WDR54	84058	broad.mit.edu	37	chr2	74650566	74650566	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgtttgctagggctgcagGaggggatatttctgatcatt	14	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74650566	A	A	74650566	1	1	57	0	1	0	0	0	0	0	0	0	17433	1189	41	4		4	WDR54	2	74650566	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	57693	74650566	168548807	300	63289											
TTC31	64427	broad.mit.edu	37	chr2	74719278	74719278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccagagttgggtaccaGctttgctcaaaatggtttct	9	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74719278	T	T	74719278	3	4	57	1	0	0	0	0	1	0	0	0	16826	971	34	3	979	3	TTC31	2	74719278	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	68712	74719278	168480095	301	63290											
DQX1	165545	broad.mit.edu	37	chr2	74752171	74752171	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccccgtgcagtcctcctgGgggatgctgtatccaacctc	12	15	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74752171	C	C	74752171	2	2	57	1	0	0	0	0	0	0	0	1	4791	1219	43	4		4	DQX1	2	74752171	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	32893	74752171	168447202	302	63291											
REG1B	5968	broad.mit.edu	37	chr2	79312794	79312794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatagaataaccaggcctGtgtgcacactcagaaacagg	9	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79312794	T	T	79312794	1	4	57	0	1	0	0	0	0	0	0	0	13319	1392	48	3		3	REG1B	2	79312794	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4560623	79312794	163886579	303	63292											
REG3A	5068	broad.mit.edu	37	chr2	79385937	79385937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtaaaatgaagagtggGgcttggggtgggagatgacc	20	3	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385937	T	T	79385937	1	4	57	0	1	0	0	0	0	0	0	0	13320	1247	43	2		2	REG3A	2	79385937	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	73143	79385937	163813436	304	63293											
CTNNA2	1496	broad.mit.edu	37	chr2	80085181	80085181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgagtttgcagatgaccCttgctcgtcggtaaagcgcg	12	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80085181	A	A	80085181	3	1	57	1	0	0	0	0	1	0	0	0	4047	681	24	2	351	2	CTNNA2	2	80085181	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	699244	80085181	163114192	305	63294											
PTCD3	55037	broad.mit.edu	37	chr2	86333332	86333332	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccaccttcctgaaggtcgAggcacgctttcccaacatgc	8	17	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86333332	T	T	86333332	1	4	57	0	1	0	0	0	0	0	0	0	12835	319	11	5		5	PTCD3	2	86333332	5'UTR	SNP	A	TCGA-17-Z026-01A-01W-0746-08	6248151	86333332	156866041	306	63295											
PTCD3	55037	broad.mit.edu	37	chr2	86363607	86363607	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtctgattgccttgtttttCtaatagtattcataatcttt	5	6	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86363607	T	T	86363607	1	4	57	0	1	0	0	0	0	0	0	0	12835	928	32	4		4	PTCD3	2	86363607	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	30275	86363607	156835766	307	63296											
CD8B	926	broad.mit.edu	37	chr2	87042560	87042560	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagggggacactttggggttCacaaggatgggggccacagc	17	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87042560	G	G	87042560	1	3	57	0	1	0	0	0	0	0	0	0	3075	841	29	4		4	CD8B	2	87042560	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	678953	87042560	156156813	308	63297											
RMND5A	64795	broad.mit.edu	37	chr2	87096065	87096065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagttatttcatctagtgGgtgcagcatgctgaacatag	12	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87096065	T	T	87096065	1	4	57	0	1	0	0	0	0	0	0	0	13508	1247	43	2		2	RMND5A	2	87096065	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	53505	87096065	156103308	309	63298											
RMND5A	64795	broad.mit.edu	37	chr2	87315068	87315068	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggagccctgggagaaggcTgagctcagatggttggggca	19	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87315068	A	A	87315068	1	1	57	0	1	0	0	0	0	0	0	0	13508	1595	55	5		5	RMND5A	2	87315068	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	219003	87315068	155884305	310	63299											
SMYD1	150572	broad.mit.edu	37	chr2	88392939	88392939	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgtgatggccaaagctttGatactgtgacccagaatgct	10	8	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88392939	C	C	88392939	1	2	57	0	1	0	0	0	0	0	0	0	14935	1305	45	4		4	SMYD1	2	88392939	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1077871	88392939	154806434	311	63300											
C2orf51	200523	broad.mit.edu	37	chr2	88824993	88824993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtatcaccaccaaccCcttgatgatggagtgacatg	9	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88824993	A	A	88824993	1	1	57	0	1	0	0	0	0	0	0	0	2195	638	22	2		2	C2orf51	2	88824993	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	432054	88824993	154374380	312	63301											
C2orf51	200523	broad.mit.edu	37	chr2	88825151	88825151	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaacaacttgtctgtgtctAggtcgtttgccatggcaggt	11	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88825151	T	T	88825151	5	4	57	1	0	0	0	0	0	0	1	0	2195	434	15	5		5	C2orf51	2	88825151	Splice_Site	SNP	A	TCGA-17-Z026-01A-01W-0746-08	158	88825151	154374222	313	63302											
ZNF2	7549	broad.mit.edu	37	chr2	95841925	95841925	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaccccccacttctgcCtcattaggactctgcccttg	5	18	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95841925	G	G	95841925	1	3	57	0	1	0	0	0	0	0	0	0	17886	696	24	4		4	ZNF2	2	95841925	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7016774	95841925	147357448	314	63303											
GPAT2	150763	broad.mit.edu	37	chr2	96690296	96690296	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacggatgcgcagcagggcCacgtgcgcccgcagcaggct	16	14	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96690296	T	T	96690296	2	4	57	1	0	0	0	0	0	0	0	1	6654	581	21	4		4	GPAT2	2	96690296	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	848371	96690296	146509077	315	63304											
NCAPH	23397	broad.mit.edu	37	chr2	97031743	97031743	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgacactccagaagcccaaGgattagacatcacaacatat	7	11	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97031743	C	C	97031743	3	2	57	1	0	0	0	0	1	0	0	0	10304	1001	35	4	1882	4	NCAPH	2	97031743	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	341447	97031743	146167630	316	63305											
CNNM3	26505	broad.mit.edu	37	chr2	97492447	97492447	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggacatgtccctggcgttccGatgctgctccatcgaggacc	12	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97492447	A	A	97492447	1	1	57	0	1	0	0	0	0	0	0	0	3646	1073	37	4		4	CNNM3	2	97492447	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	460704	97492447	145706926	317	63306											
TMEM131	23505	broad.mit.edu	37	chr2	98373611	98373611	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaagggtccgagcttcttCttccaatcgtggggctccat	10	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98373611	T	T	98373611	3	4	57	1	0	0	0	0	1	0	0	0	16167	913	32	4	52	4	TMEM131	2	98373611	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	881164	98373611	144825762	318	63307											
VWA3B	200403	broad.mit.edu	37	chr2	98750290	98750290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctcttcacgtttcagattCcacgcatttgccgagagaac	7	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98750290	A	A	98750290	3	1	57	1	0	0	0	0	1	0	0	0	17368	854	30	3	898	3	VWA3B	2	98750290	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	376679	98750290	144449083	319	63308											
CNGA3	1261	broad.mit.edu	37	chr2	99013258	99013258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccagttcgtggtcctcaGcgatggcagctacttcgggg	13	13	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99013258	T	T	99013258	3	4	57	1	0	0	0	0	1	0	0	0	3630	971	34	3	1651	3	CNGA3	2	99013258	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	262968	99013258	144186115	320	63309											
LYG1	129530	broad.mit.edu	37	chr2	99907838	99907838	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcatgggttgatatttcagGaggtatggcatgtctatttc	11	5	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99907838	A	A	99907838	2	1	57	1	0	0	0	0	0	0	0	1	9192	1161	41	4		4	LYG1	2	99907838	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	894580	99907838	143291535	321	63310											
IL1R2	7850	broad.mit.edu	37	chr2	102642745	102642745	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tattttggggagcactatagGagaatataacatgttgaatg	11	3	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102642745	C	C	102642745	1	2	57	0	1	0	0	0	0	0	0	0	7729	1189	41	4		4	IL1R2	2	102642745	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2734907	102642745	140556628	322	63311											
IL18RAP	8807	broad.mit.edu	37	chr2	103040548	103040548	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccttcactttttgaccccAggggtgaataattctgggtc	9	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103040548	C	C	103040548	2	2	57	1	0	0	0	0	0	0	0	1	7718	175	7	5		5	IL18RAP	2	103040548	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	397803	103040548	140158825	323	63312											
SLC9A4	389015	broad.mit.edu	37	chr2	103120023	103120023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcttggaggggtattGtttggcatcgtttttggatt	17	3	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103120023	T	T	103120023	3	4	57	1	0	0	0	0	1	0	0	0	14830	1368	48	3	847	3	SLC9A4	2	103120023	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	79475	103120023	140079350	324	63313											
SLC9A2	6549	broad.mit.edu	37	chr2	103321031	103321031	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacaacagacacagtctgaCagccgacacaagtgagagac	9	12	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103321031	T	T	103321031	3	4	57	1	0	0	0	0	1	0	0	0	14826	478	17	4	1912	4	SLC9A2	2	103321031	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	201008	103321031	139878342	325	63314											
MRPS9	64965	broad.mit.edu	37	chr2	105710042	105710042	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttataaacatggaagtggaaGaataaaagtaaatggaattg	10	1	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105710042	A	A	105710042	3	1	57	1	0	0	0	0	1	0	0	0	9943	942	33	4	909	4	MRPS9	2	105710042	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2389011	105710042	137489331	326	63315											
NCK2	8440	broad.mit.edu	37	chr2	106509318	106509318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaaaaaaaaaaaaaaaaGcagagacccagtgtttgagc	7	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106509318	T	T	106509318	1	4	57	0	1	0	0	0	0	0	0	0	10315	986	34	3		3	NCK2	2	106509318	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	799276	106509318	136690055	327	63316											
C2orf40	84417	broad.mit.edu	37	chr2	106690643	106690643	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcatatgccaagtgctatCaggcactggatcatgttacc	8	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106690643	T	T	106690643	1	4	57	0	1	0	0	0	0	0	0	0	2187	841	29	4		4	C2orf40	2	106690643	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	181325	106690643	136508730	328	63317											
UXS1	80146	broad.mit.edu	37	chr2	106761591	106761591	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctcaggaatcccgcagctCtggcaaggccacctgcggag	12	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106761591	A	A	106761591	1	1	57	0	1	0	0	0	0	0	0	0	17236	928	32	3		3	UXS1	2	106761591	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	70948	106761591	136437782	329	63318											
ST6GAL2	84620	broad.mit.edu	37	chr2	107423274	107423274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttctcatagagtagtgGgtggtacgccccgagggtgc	16	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107423274	T	T	107423274	3	4	57	1	0	0	0	0	1	0	0	0	15340	1232	43	2	143	2	ST6GAL2	2	107423274	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	661683	107423274	135776099	330	63319											
RGPD4	285190	broad.mit.edu	37	chr2	108486289	108486289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgactagatagtcttaactGtagtatagactttaacagtg	8	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108486289	T	T	108486289	1	4	57	0	1	0	0	0	0	0	0	0	13396	1392	48	3		3	RGPD4	2	108486289	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1063015	108486289	134713084	331	63320											
SLC5A7	60482	broad.mit.edu	37	chr2	108618157	108618157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaagaaaagaaataGtcaatgtgttattttaattc	5	2	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108618157	T	T	108618157	1	4	57	0	1	0	0	0	0	0	0	0	14784	1044	36	3		3	SLC5A7	2	108618157	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	131868	108618157	134581216	332	63321											
BUB1	699	broad.mit.edu	37	chr2	111395586	111395586	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagcagtacaattagcctAttacgtagggccctaatctt	8	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111395586	G	G	111395586	2	3	57	1	0	0	0	0	0	0	0	1	1580	446	16	5		5	BUB1	2	111395586	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2777429	111395586	131803787	333	63322											
FBLN7	129804	broad.mit.edu	37	chr2	112942902	112942902	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcggcaatgtgagctacgtGaagacgtctccattgtgagt	13	8	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112942902	A	A	112942902	2	1	57	1	0	0	0	0	0	0	0	1	5758	1277	45	4		4	FBLN7	2	112942902	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1547316	112942902	130256471	334	63323											
POLR1B	84172	broad.mit.edu	37	chr2	113331230	113331230	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctctgaaaaaattaaacaagGagatagtagcctggtgtttg	10	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113331230	C	C	113331230	3	2	57	1	0	0	0	0	1	0	0	0	12305	1174	41	4	2417	4	POLR1B	2	113331230	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	388328	113331230	129868143	335	63324											
RABL2A	11159	broad.mit.edu	37	chr2	114390335	114390335	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggttggtaatgctgataccCaatttccagacttgacccgg	11	10	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114390335	T	T	114390335	1	4	57	0	1	0	0	0	0	0	0	0	13078	609	21	4		4	RABL2A	2	114390335	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1059105	114390335	128809038	336	63325											
DPP10	57628	broad.mit.edu	37	chr2	116600097	116600097	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagtccaagtctactgtGttgctaggggtgcagaaccc	11	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116600097	T	T	116600097	1	4	57	0	1	0	0	0	0	0	0	0	4767	1392	48	3		3	DPP10	2	116600097	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2209762	116600097	126599276	337	63326											
PCDP1	200373	broad.mit.edu	37	chr2	120388169	120388169	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcaactgtacaaaattaaGagatatcagccattctctgt	5	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120388169	A	A	120388169	2	1	57	1	0	0	0	0	0	0	0	1	11666	933	33	4		4	PCDP1	2	120388169	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3788072	120388169	122811204	338	63327											
TSN	7247	broad.mit.edu	37	chr2	122522735	122522735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtctgtcaacagcgtgaCtgctggagactactcccgac	11	13	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122522735	A	A	122522735	3	1	57	1	0	0	0	0	1	0	0	0	16754	565	20	3	501	3	TSN	2	122522735	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2134566	122522735	120676638	339	63328											
CNTNAP5	129684	broad.mit.edu	37	chr2	125261826	125261826	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagctgtcagattgcggaAtaaaaaatggcttttatatg	9	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125261826	T	T	125261826	1	4	57	0	1	0	0	0	0	0	0	0	3682	116	4	5		5	CNTNAP5	2	125261826	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2739091	125261826	117937547	340	63329											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521317	125521317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatagttatcactgataCcgacagatcaaactcagaag	7	9	4	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521317	A	A	125521317	3	1	57	1	0	0	0	0	1	0	0	0	3682	507	18	3	2358	3	CNTNAP5	2	125521317	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	259491	125521317	117678056	341	63330											
GYPC	2995	broad.mit.edu	37	chr2	127447840	127447840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgttcacagagcctgatcCggggatggcctctgcctcca	11	14	3	2	rs143216051	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127447840	A	A	127447840	3	1	57	1	0	0	0	0	1	0	0	0	6975	652	23	1	65	1	GYPC	2	127447840	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1926523	127447840	115751533	342	63331											
CCDC74B	91409	broad.mit.edu	37	chr2	130898685	130898685	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcccttagggtgcaggcaaGacttacctggcctgcccttg	13	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130898685	T	T	130898685	1	4	57	0	1	0	0	0	0	0	0	0	2876	957	33	3		3	CCDC74B	2	130898685	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3450845	130898685	112300688	343	63332											
PLEKHB2	55041	broad.mit.edu	37	chr2	131955102	131955102	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcattgttactagcatcaAtaataacctaatgcagatat	5	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131955102	G	G	131955102	1	3	57	0	1	0	0	0	0	0	0	0	12160	116	4	5		5	PLEKHB2	2	131955102	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1056417	131955102	111244271	344	63333											
POTEE	445582	broad.mit.edu	37	chr2	132021733	132021733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtggctataggttcaccaCcatggccgagcgggaaatcg	14	11	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132021733	A	A	132021733	3	1	57	1	0	0	0	0	1	0	0	0	12360	507	18	3	2763	3	POTEE	2	132021733	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	66631	132021733	111177640	345	63334											
LOC150786	150786	broad.mit.edu	37	chr2	132124473	132124473	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcaccagccccatcccaGtcactcaccacaggactgga	6	20	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132124473	T	T	132124473	1	4	57	0	1	0	0	0	0	0	0	0	8948	1044	36	3		3	LOC150786	2	132124473	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	102740	132124473	111074900	346	63335											
FAM128A	653784	broad.mit.edu	37	chr2	132241788	132241788	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcagcgctgcctttgtctCtccctaaggagacacaaagc	11	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132241788	T	T	132241788	3	4	57	1	0	0	0	0	1	0	0	0	5480	913	32	4	157	4	FAM128A	2	132241788	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	117315	132241788	110957585	347	63336											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135851081	135851081	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgaatcttaaagcaatatCaaaactgcatgatctagcaa	5	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135851081	G	G	135851081	1	3	57	0	1	0	0	0	0	0	0	0	13043	841	29	4		4	RAB3GAP1	2	135851081	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3609293	135851081	107348292	348	63337											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135884268	135884268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaaatactgctgatctGcctaacttccaaatcggaga	7	11	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135884268	T	T	135884268	1	4	57	0	1	0	0	0	0	0	0	0	13043	1334	46	3		3	RAB3GAP1	2	135884268	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	33187	135884268	107315105	349	63338											
R3HDM1	23518	broad.mit.edu	37	chr2	136418792	136418792	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcctcacagaaaaacataTgtaatgcaagtaaaattgat	5	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136418792	A	A	136418792	1	1	57	0	1	0	0	0	0	0	0	0	12995	1479	51	5		5	R3HDM1	2	136418792	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	534524	136418792	106780581	350	63339											
R3HDM1	23518	broad.mit.edu	37	chr2	136418805	136418805	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacatatgtaatgcaagtaAaattgattttttcccgcaat	5	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136418805	C	C	136418805	1	2	57	0	1	0	0	0	0	0	0	0	12995	29	1	5		5	R3HDM1	2	136418805	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	13	136418805	106780568	351	63340											
LCT	3938	broad.mit.edu	37	chr2	136575241	136575241	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgtgccccatggggaagatCcgggaccaggagatggagaa	16	10	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136575241	A	A	136575241	2	1	57	1	0	0	0	0	0	0	0	1	8765	842	30	3		3	LCT	2	136575241	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	156436	136575241	106624132	352	63341											
SPOPL	339745	broad.mit.edu	37	chr2	139316728	139316728	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagactgcagttttttcgTgagaggacaagaatttaaag	10	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139316728	C	C	139316728	3	2	57	1	0	0	0	0	1	0	0	0	15203	1696	59	5	635	5	SPOPL	2	139316728	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2741487	139316728	103882645	353	63342											
NXPH2	11249	broad.mit.edu	37	chr2	139428518	139428518	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaagataagtatggggtctCactatggtaattgtagtcag	12	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139428518	T	T	139428518	3	4	57	1	0	0	0	0	1	0	0	0	10886	835	29	4	29	4	NXPH2	2	139428518	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	111790	139428518	103770855	354	63343											
LRP1B	53353	broad.mit.edu	37	chr2	141079682	141079682	+	Intron	DEL	A	-	-													tgaaacaaaagaaaacaaagAagtgtgtaaatatagataca							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141079682	-	-	141079682	6	5	57	0	1	1	0	1	0	0	0	0	9042	261	9	0		0	LRP1B	2	141079682	Intron	DEL	A	TCGA-17-Z026-01A-01W-0746-08	1651164	141079682	102119691	355	63344											
LRP1B	53353	broad.mit.edu	37	chr2	141283911	141283911	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggaactcaaccgtggcacAggttgaaactagaaaaacag	11	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141283911	C	C	141283911	3	2	57	1	0	0	0	0	1	0	0	0	9042	188	7	5	6204	5	LRP1B	2	141283911	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	204229	141283911	101915462	356	63345											
LRP1B	53353	broad.mit.edu	37	chr2	141459407	141459407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctgacagacccgtttgCatgtgctctgccaaaaagtt	8	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141459407	A	A	141459407	3	1	57	1	0	0	0	0	1	0	0	0	9042	710	25	3	7697	3	LRP1B	2	141459407	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	175496	141459407	101739966	357	63346											
LRP1B	53353	broad.mit.edu	37	chr2	141460100	141460101	+	Nonsense_Mutation	DNP	CC	AA	AA													tccaatacagggcatttgtcCccattcagtccagaacaaga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	141460101	AA	AA	141460100	4	1	57	1	0	0	0	0	0	1	0	0	9042	632	22	2	7969	2	LRP1B	2	141460100	Nonsense_Mutation	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	693	141460100	101739273	358	63347											
KYNU	8942	broad.mit.edu	37	chr2	143643024	143643024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaacggatgagagggtgGctctccacctagatgaggaa	13	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143643024	T	T	143643024	3	4	57	1	0	0	0	0	1	0	0	0	8659	1203	42	3	90	3	KYNU	2	143643024	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2182924	143643024	99556349	359	63348											
ZEB2	9839	broad.mit.edu	37	chr2	145156752	145156752	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagttcatcggagttgggctCcatgttcatagcatagtatg	11	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145156752	A	A	145156752	4	1	57	1	0	0	0	0	0	1	0	0	17750	864	30	3	1654	3	ZEB2	2	145156752	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1513728	145156752	98042621	360	63349											
NEB	4703	broad.mit.edu	37	chr2	152484282	152484282	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaccacatcatcttggggtCatcttcaatgttccgggctc	10	12	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152484282	T	T	152484282	3	4	57	1	0	0	0	0	1	0	0	0	10397	826	29	4	16244	4	NEB	2	152484282	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7327530	152484282	90715091	361	63350											
NEB	4703	broad.mit.edu	37	chr2	152496661	152496661	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagatcaagtaaaagcactCtcaaaatttagtttggtgga	9	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152496661	G	G	152496661	1	3	57	0	1	0	0	0	0	0	0	0	10397	928	32	4		4	NEB	2	152496661	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12379	152496661	90702712	362	63351											
NEB	4703	broad.mit.edu	37	chr2	152531009	152531009	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acatcactggcaatgtttctCgatgccttggctgcagtgat	10	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152531009	G	G	152531009	2	3	57	1	0	0	0	0	0	0	0	1	10397	871	31	4		4	NEB	2	152531009	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	34348	152531009	90668364	363	63352											
NEB	4703	broad.mit.edu	37	chr2	152581406	152581406	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgacactttctttgcatgttCaatatcctttgctttttcat	4	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152581406	T	T	152581406	3	4	57	1	0	0	0	0	1	0	0	0	10397	835	29	4	25918	4	NEB	2	152581406	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	50397	152581406	90617967	364	63353											
NEB	4703	broad.mit.edu	37	chr2	152581593	152581593	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggtctgcatcacaaagcaTagtttctgcattttagctgg	9	8	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152581593	A	A	152581593	1	1	57	0	1	0	0	0	0	0	0	0	10397	1421	49	5		5	NEB	2	152581593	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	187	152581593	90617780	365	63354											
NEB	4703	broad.mit.edu	37	chr2	152586092	152586092	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagctcttcctgctttaatGagaatgcagtttatgcagct	8	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152586092	A	A	152586092	1	1	57	0	1	0	0	0	0	0	0	0	10397	1305	45	4		4	NEB	2	152586092	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4499	152586092	90613281	366	63355											
FMNL2	114793	broad.mit.edu	37	chr2	153471417	153471417	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtccagatccaggcttaccTggacaatgtttttgatgtag	10	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153471417	A	A	153471417	3	1	57	1	0	0	0	0	1	0	0	0	6010	1580	55	5	1161	5	FMNL2	2	153471417	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	885325	153471417	89727956	367	63356											
GPD2	2820	broad.mit.edu	37	chr2	157367604	157367604	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtgtcagttctttcctGtagtattatgtttatgggta	11	4	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157367604	A	A	157367604	1	1	57	0	1	0	0	0	0	0	0	0	6671	1392	48	4		4	GPD2	2	157367604	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3896187	157367604	85831769	368	63357											
GALNT5	11227	broad.mit.edu	37	chr2	158156186	158156186	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctcattcaaggtattaccAggtgtttcccaacttttctt	5	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158156186	C	C	158156186	1	2	57	0	1	0	0	0	0	0	0	0	6278	203	7	5		5	GALNT5	2	158156186	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	788582	158156186	85043187	369	63358											
ACVR1	90	broad.mit.edu	37	chr2	158705316	158705316	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtgagcagttgatggttGaaagtcaagggaattacatg	14	3	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158705316	C	C	158705316	1	2	57	0	1	0	0	0	0	0	0	0	220	1305	45	4		4	ACVR1	2	158705316	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	549130	158705316	84494057	370	63359											
PKP4	8502	broad.mit.edu	37	chr2	159488402	159488402	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccgcagcccaaaccatGgaactgtggagctccaagga	11	12	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159488402	C	C	159488402	3	2	57	1	0	0	0	0	1	0	0	0	12082	1349	47	4	1317	4	PKP4	2	159488402	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	783086	159488402	83710971	371	63360											
PKP4	8502	broad.mit.edu	37	chr2	159519835	159519835	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaagtcccccaaaggggttGagatgctgtggcacccatcg	13	12	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159519835	C	C	159519835	3	2	57	1	0	0	0	0	1	0	0	0	12082	1291	45	4	2509	4	PKP4	2	159519835	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	31433	159519835	83679538	372	63361											
BAZ2B	29994	broad.mit.edu	37	chr2	160206251	160206251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagcaaatggatttaagcCaacaggattctgagcagaag	10	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160206251	A	A	160206251	3	1	57	1	0	0	0	0	1	0	0	0	1337	594	21	2	1715	2	BAZ2B	2	160206251	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	686416	160206251	82993122	373	63362											
BAZ2B	29994	broad.mit.edu	37	chr2	160289774	160289774	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggatgtgctggtgaactaGaggttgcttttggatttgac	14	4	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160289774	C	C	160289774	3	2	57	1	0	0	0	0	1	0	0	0	1337	942	33	4	5228	4	BAZ2B	2	160289774	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	83523	160289774	82909599	374	63363											
KCNH7	90134	broad.mit.edu	37	chr2	163241425	163241425	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttatggtatctgcagagTcttcaggatcatttgtactg	10	7	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163241425	A	A	163241425	3	1	57	1	0	0	0	0	1	0	0	0	8107	1667	58	5	871	5	KCNH7	2	163241425	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2951651	163241425	79957948	375	63364											
KCNH7	90134	broad.mit.edu	37	chr2	163256901	163256901	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgcagcaatgtctggttGagatgtagacaaatgtctgc	11	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163256901	C	C	163256901	2	2	57	1	0	0	0	0	0	0	0	1	8107	1277	45	4		4	KCNH7	2	163256901	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	15476	163256901	79942472	376	63365											
COBLL1	22837	broad.mit.edu	37	chr2	165584537	165584537	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtcattaagagattttgtCaagtcaagaggctcctgcga	11	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165584537	G	G	165584537	3	3	57	1	0	0	0	0	1	0	0	0	3686	825	29	4	2941	4	COBLL1	2	165584537	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2327636	165584537	77614836	377	63366											
TTC21B	79809	broad.mit.edu	37	chr2	166781139	166781139	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttactacagtctccaggactGagatgcaacgcctgagaagt	10	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166781139	C	C	166781139	4	2	57	1	0	0	0	0	0	1	0	0	16814	1294	45	4	2586	4	TTC21B	2	166781139	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1196602	166781139	76418234	378	63367											
SCN7A	6332	broad.mit.edu	37	chr2	167273453	167273453	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggcagacaagaaacacatTcaaagtgggtaaggttgttt	11	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167273453	A	A	167273453	3	1	57	1	0	0	0	0	1	0	0	0	14036	1783	62	5	1894	5	SCN7A	2	167273453	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	492314	167273453	75925920	379	63368											
XIRP2	129446	broad.mit.edu	37	chr2	168106326	168106326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagcaaagagaatttagCggatctgacagagggaaact	13	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168106326	A	A	168106326	3	1	57	1	0	0	0	0	1	0	0	0	17557	767	27	3	8454	3	XIRP2	2	168106326	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	832873	168106326	75093047	380	63369											
DHRS9	10170	broad.mit.edu	37	chr2	169951987	169951987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatccatcctcccctttGcaccctagacttccactctg	4	17	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169951987	T	T	169951987	1	4	57	0	1	0	0	0	0	0	0	0	4538	1334	46	3		3	DHRS9	2	169951987	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1845661	169951987	73247386	381	63370											
LRP2	4036	broad.mit.edu	37	chr2	170097603	170097603	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacactgccattgccaacTaggacagcgaaagggctgag	12	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170097603	A	A	170097603	3	1	57	1	0	0	0	0	1	0	0	0	9043	1522	53	5	10247	5	LRP2	2	170097603	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	145616	170097603	73101770	382	63371											
MYO3B	140469	broad.mit.edu	37	chr2	171259484	171259484	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccagtactatttcaatcaGcatgtttttgctcttgagca	6	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171259484	C	C	171259484	3	2	57	1	0	0	0	0	1	0	0	0	10171	962	34	4	2330	4	MYO3B	2	171259484	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1161881	171259484	71939889	383	63372											
MAP1D	254042	broad.mit.edu	37	chr2	172928628	172928628	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaacgacttacataagggGcaacaaacactcctcttttt	6	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172928628	A	A	172928628	1	1	57	0	1	0	0	0	0	0	0	0	9321	1218	42	4		4	MAP1D	2	172928628	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1669144	172928628	70270745	384	63373											
RAPGEF4	11069	broad.mit.edu	37	chr2	173782498	173782498	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctcaaagcaagtaaatatCtgtgtgttgagtttacaatc	8	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173782498	T	T	173782498	1	4	57	0	1	0	0	0	0	0	0	0	13154	928	32	4		4	RAPGEF4	2	173782498	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	853870	173782498	69416875	385	63374											
RAPGEF4	11069	broad.mit.edu	37	chr2	173879384	173879384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaatatactgttgtcctGcaatacagggacctacttat	7	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173879384	T	T	173879384	1	4	57	0	1	0	0	0	0	0	0	0	13154	1334	46	3		3	RAPGEF4	2	173879384	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	96886	173879384	69319989	386	63375											
OLA1	29789	broad.mit.edu	37	chr2	174988383	174988383	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgatctataacccaggaTtttactttgcacattatatc	4	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174988383	A	A	174988383	3	1	57	1	0	0	0	0	1	0	0	0	10945	1490	52	5	644	5	OLA1	2	174988383	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1108999	174988383	68210990	387	63376											
HOXD3	3232	broad.mit.edu	37	chr2	177036402	177036402	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggccaacctgctgaatctCacggaacgccagatcaagat	9	12	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177036402	T	T	177036402	2	4	57	1	0	0	0	0	0	0	0	1	7390	813	29	4		4	HOXD3	2	177036402	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2048019	177036402	66162971	388	63377											
MTX2	10651	broad.mit.edu	37	chr2	177202373	177202373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactattttgaagatcgtgGtaaaggcaggctgtcataga	12	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177202373	T	T	177202373	3	4	57	1	0	0	0	0	1	0	0	0	10062	1261	44	3	811	3	MTX2	2	177202373	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	165971	177202373	65997000	389	63378											
NFE2L2	4780	broad.mit.edu	37	chr2	178098966	178098966	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttactccaagatctatatCttgcctccaaagtatgtcaa	4	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178098966	G	G	178098966	3	3	57	1	0	0	0	0	1	0	0	0	10463	913	32	4	1754	4	NFE2L2	2	178098966	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	896593	178098966	65100407	390	63379											
PDE11A	50940	broad.mit.edu	37	chr2	178883149	178883150	+	Intron	INS	-	T	T													tgtgatttcaactatcatgaINStgggggcatctggaaagctg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178883150	T	T	178883149	6	5	57	0	1	1	1	0	0	0	0	0	11725	348	12	0		0	PDE11A	2	178883149	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	784183	178883149	64316224	391	63380											
FKBP7	51661	broad.mit.edu	37	chr2	179334275	179334275	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctctataaaagcagtgatCagagcccatgctagctagac	9	10	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179334275	T	T	179334275	1	4	57	0	1	0	0	0	0	0	0	0	5970	841	29	4		4	FKBP7	2	179334275	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	451126	179334275	63865098	392	63381											
TTN	7273	broad.mit.edu	37	chr2	179400235	179400235	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttaagttgacagaatctcGtgagacatcactaactttga	8	7	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179400235	T	T	179400235	2	4	57	1	0	0	0	0	0	0	0	1	16861	1153	40	3		3	TTN	2	179400235	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	65960	179400235	63799138	393	63382											
TTN	7273	broad.mit.edu	37	chr2	179403426	179403426	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttattgctcttcttccaggCactgtctccagactgtctat	6	13	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179403426	T	T	179403426	3	4	57	1	0	0	0	0	1	0	0	0	16861	710	25	4	8885	4	TTN	2	179403426	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3191	179403426	63795947	394	63383											
TTN	7273	broad.mit.edu	37	chr2	179408911	179408911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaataattcacctaaaaGcttctgtgataaatacctat	4	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179408911	T	T	179408911	1	4	57	0	1	0	0	0	0	0	0	0	16861	986	34	3		3	TTN	2	179408911	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5485	179408911	63790462	395	63384											
TTN	7273	broad.mit.edu	37	chr2	179434136	179434136	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagcgtatattttccactatCatatcggttgacattgtcaa	6	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179434136	T	T	179434136	3	4	57	1	0	0	0	0	1	0	0	0	16861	826	29	4	31404	4	TTN	2	179434136	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	25225	179434136	63765237	396	63385											
TTN	7273	broad.mit.edu	37	chr2	179434868	179434868	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaatttcactaccaccatCagatgctggtctttcccata	5	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179434868	G	G	179434868	3	3	57	1	0	0	0	0	1	0	0	0	16861	826	29	4	32136	4	TTN	2	179434868	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	732	179434868	63764505	397	63386											
TTN	7273	broad.mit.edu	37	chr2	179437530	179437530	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaagtctcagggtgcaGcaggcccttatagtaacaac	9	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179437530	A	A	179437530	2	1	57	1	0	0	0	0	0	0	0	1	16861	963	34	4		4	TTN	2	179437530	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2662	179437530	63761843	398	63387											
TTN	7273	broad.mit.edu	37	chr2	179438786	179438786	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacctttatctttggtgcctCaacatcatccctgcaagtga	6	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179438786	A	A	179438786	4	1	57	1	0	0	0	0	0	1	0	0	16861	835	29	3	36054	3	TTN	2	179438786	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1256	179438786	63760587	399	63388											
TTN	7273	broad.mit.edu	37	chr2	179450012	179450012	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttccatacacatgggcttCaattcggagttttttcccag	7	11	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179450012	T	T	179450012	3	4	57	1	0	0	0	0	1	0	0	0	16861	835	29	4	43736	4	TTN	2	179450012	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	11226	179450012	63749361	400	63389											
TTN	7273	broad.mit.edu	37	chr2	179465875	179465875	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgaggccaatcttgaGtttaataggaggatcaggag	14	4	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179465875	A	A	179465875	3	1	57	1	0	0	0	0	1	0	0	0	16861	1029	36	4	52237	4	TTN	2	179465875	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	15863	179465875	63733498	401	63390											
TTN	7273	broad.mit.edu	37	chr2	179517629	179517629	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccaagggcattttcttttCaggaacaacctctatgggag	10	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179517629	T	T	179517629	1	4	57	0	1	0	0	0	0	0	0	0	16861	841	29	4		4	TTN	2	179517629	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	51754	179517629	63681744	402	63391											
TTN	7273	broad.mit.edu	37	chr2	179534337	179534337	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctttagctggtggaacttCaggctttttcagaacagctt	9	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179534337	T	T	179534337	1	4	57	0	1	0	0	0	0	0	0	0	16861	841	29	4		4	TTN	2	179534337	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	16708	179534337	63665036	403	63392											
TTN	7273	broad.mit.edu	37	chr2	179558565	179558565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagacagaaatgtctacaCgatcacaaattagacaacaa	7	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179558565	A	A	179558565	1	1	57	0	1	0	0	0	0	0	0	0	16861	551	19	3		3	TTN	2	179558565	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	24228	179558565	63640808	404	63393											
TTN	7273	broad.mit.edu	37	chr2	179568768	179568768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttgggaaataagaacaCatgaccactttggtgtgtgt	12	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179568768	A	A	179568768	1	1	57	0	1	0	0	0	0	0	0	0	16861	493	17	3		3	TTN	2	179568768	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	10203	179568768	63630605	405	63394											
TTN	7273	broad.mit.edu	37	chr2	179576050	179576050	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgaacatctctcaattgtcGagaaaatgatggtggaagtt	10	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179576050	C	C	179576050	3	2	57	1	0	0	0	0	1	0	0	0	16861	1066	37	4	76680	4	TTN	2	179576050	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7282	179576050	63623323	406	63395											
TTN	7273	broad.mit.edu	37	chr2	179611124	179611124	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatggtcaggagtaaattCgggaactgtcactattttca	9	6	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179611124	A	A	179611124	4	1	57	1	0	0	0	0	0	1	0	0	16861	893	31	3	94294	3	TTN	2	179611124	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	35074	179611124	63588249	407	63396											
TTN	7273	broad.mit.edu	37	chr2	179611757	179611757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtaccagtggggtttgGtcctccagtaggaatagaat	12	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179611757	T	T	179611757	3	4	57	1	0	0	0	0	1	0	0	0	16861	1261	44	3	94927	3	TTN	2	179611757	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	633	179611757	63587616	408	63397											
SESTD1	91404	broad.mit.edu	37	chr2	180013968	180013968	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaacaatagagatatcttTtatcagaataattatagttt	4	3	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180013968	A	A	180013968	1	1	57	0	1	0	0	0	0	0	0	0	14240	1856	64	5		5	SESTD1	2	180013968	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	402211	180013968	63185405	409	63398											
ITGA4	3676	broad.mit.edu	37	chr2	182335412	182335414	+	Intron	DEL	CTT	-	-													ctgatcatgtagcagtcttaCttcttctaccaagattccgc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182335414	-	-	182335412	6	5	57	0	1	1	0	1	0	0	0	0	7948	580	20	0		0	ITGA4	2	182335412	Intron	DEL	CTT	TCGA-17-Z026-01A-01W-0746-08	2321444	182335412	60863961	410	63399											
ITGA4	3676	broad.mit.edu	37	chr2	182360068	182360068	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctctttgactaatgatgatCattaatctgtgttgtttttt	6	5	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182360068	T	T	182360068	1	4	57	0	1	0	0	0	0	0	0	0	7948	841	29	4		4	ITGA4	2	182360068	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	24656	182360068	60839305	411	63400											
SSFA2	6744	broad.mit.edu	37	chr2	182763764	182763764	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatatcttggccaaagagaGaagattacagtttcatcaga	8	6	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182763764	A	A	182763764	3	1	57	1	0	0	0	0	1	0	0	0	15301	942	33	4	450	4	SSFA2	2	182763764	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	403696	182763764	60435609	412	63401											
SSFA2	6744	broad.mit.edu	37	chr2	182786826	182786826	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgtatgttctggtccctCtcatgctaacagaagaactg	8	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182786826	T	T	182786826	3	4	57	1	0	0	0	0	1	0	0	0	15301	913	32	4	3424	4	SSFA2	2	182786826	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	23062	182786826	60412547	413	63402											
WDR75	84128	broad.mit.edu	37	chr2	190333384	190333384	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaggacttagggatcatatCatcaggtctgtacttggaat	10	6	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190333384	T	T	190333384	1	4	57	0	1	0	0	0	0	0	0	0	17452	841	29	4		4	WDR75	2	190333384	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7546558	190333384	52865989	414	63403											
ANKAR	150709	broad.mit.edu	37	chr2	190541598	190541598	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttagaagctaattatgatCagagttcttcttgtcaatta	7	5	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190541598	T	T	190541598	4	4	57	1	0	0	0	0	0	1	0	0	623	827	29	4	384	4	ANKAR	2	190541598	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	208214	190541598	52657775	415	63404											
PMS1	5378	broad.mit.edu	37	chr2	190656499	190656499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaacaattcttacaagttGcatttttatcttctagctgc	4	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190656499	T	T	190656499	1	4	57	0	1	0	0	0	0	0	0	0	12237	1334	46	3		3	PMS1	2	190656499	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	114901	190656499	52542874	416	63405											
PMS1	5378	broad.mit.edu	37	chr2	190729094	190729094	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttaatcttttaaacatttGatttctaggccgggcgcagt	8	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190729094	A	A	190729094	1	1	57	0	1	0	0	0	0	0	0	0	12237	1305	45	4		4	PMS1	2	190729094	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	72595	190729094	52470279	417	63406											
GLS	2744	broad.mit.edu	37	chr2	191827653	191827653	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccagtacacacctcaaggaGattctgacaacgggaaggaa	10	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191827653	A	A	191827653	3	1	57	1	0	0	0	0	1	0	0	0	6527	942	33	4	2021	4	GLS	2	191827653	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1098559	191827653	51371720	418	63407											
STAT1	6772	broad.mit.edu	37	chr2	191850245	191850245	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgctcttccctgatgggtCtgaactcctctgtgaggtgt	12	11	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191850245	A	A	191850245	1	1	57	0	1	0	0	0	0	0	0	0	15382	928	32	3		3	STAT1	2	191850245	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	22592	191850245	51349128	419	63408											
STAT4	6775	broad.mit.edu	37	chr2	191894687	191894687	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacgtcctcttttctacgaaTtactccataatttttctatt	2	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191894687	A	A	191894687	1	1	57	0	1	0	0	0	0	0	0	0	15385	1508	52	5		5	STAT4	2	191894687	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	44442	191894687	51304686	420	63409											
MARS2	92935	broad.mit.edu	37	chr2	198571382	198571382	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccaaaagaataaatccttCtgagacctacccagccttct	5	13	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198571382	G	G	198571382	3	3	57	1	0	0	0	0	1	0	0	0	9409	913	32	4	1255	4	MARS2	2	198571382	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6676695	198571382	44627991	421	63410											
SATB2	23314	broad.mit.edu	37	chr2	200245283	200245283	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgaagaggagacactgcaGcagccattcttgggtcttgt	12	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200245283	C	C	200245283	1	2	57	0	1	0	0	0	0	0	0	0	13966	986	34	4		4	SATB2	2	200245283	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1673901	200245283	42954090	422	63411											
CASP8	841	broad.mit.edu	37	chr2	202149735	202149735	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatggacaggaggcccccatCtatgagctgacatctcagtt	11	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202149735	G	G	202149735	3	3	57	1	0	0	0	0	1	0	0	0	2703	903	32	4	1306	4	CASP8	2	202149735	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1904452	202149735	41049638	423	63412											
TRAK2	66008	broad.mit.edu	37	chr2	202277618	202277618	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccttaatgtctggagataTagggaaagggagattttccc	11	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202277618	C	C	202277618	1	2	57	0	1	0	0	0	0	0	0	0	16574	1421	49	5		5	TRAK2	2	202277618	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	127883	202277618	40921755	424	63413											
ALS2	57679	broad.mit.edu	37	chr2	202591928	202591928	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaggaaaataccataataGactaaccttttcctggggtg	9	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202591928	C	C	202591928	1	2	57	0	1	0	0	0	0	0	0	0	550	957	33	4		4	ALS2	2	202591928	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	314310	202591928	40607445	425	63414											
CYP20A1	57404	broad.mit.edu	37	chr2	204157021	204157021	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cccttggtgtggtacttcagGatcctaatacttggccatct	9	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204157021	C	C	204157021	3	2	57	1	0	0	0	0	1	0	0	0	4185	1174	41	4	1162	4	CYP20A1	2	204157021	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1565093	204157021	39042352	426	63415											
RAPH1	65059	broad.mit.edu	37	chr2	204312898	204312898	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catatttctgtttactgattGatggtctgtattaaaattaa	6	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204312898	A	A	204312898	1	1	57	0	1	0	0	0	0	0	0	0	13158	1305	45	4		4	RAPH1	2	204312898	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	155877	204312898	38886475	427	63416											
PARD3B	117583	broad.mit.edu	37	chr2	205986260	205986260	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcctcctggggtactttaGaagatgctgcacctcaaagc	9	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205986260	C	C	205986260	1	2	57	0	1	0	0	0	0	0	0	0	11538	957	33	4		4	PARD3B	2	205986260	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1673362	205986260	37213113	428	63417											
EEF1B2	1933	broad.mit.edu	37	chr2	207026894	207026894	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttttcaaagcttgaccttGaagtaatttcctccacattc	4	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207026894	A	A	207026894	1	1	57	0	1	0	0	0	0	0	0	0	4965	1305	45	4		4	EEF1B2	2	207026894	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1040634	207026894	36172479	429	63418											
CRYGD	1421	broad.mit.edu	37	chr2	208986484	208986484	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcctatagtcccctggcatCagcaggtactgccgtcctcg	10	16	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208986484	A	A	208986484	2	1	57	1	0	0	0	0	0	0	0	1	3949	813	29	3		3	CRYGD	2	208986484	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1959590	208986484	34212889	430	63419											
PIKFYVE	200576	broad.mit.edu	37	chr2	209218816	209218816	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catttcctttctagccacctCattatagattattctttgct	3	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209218816	T	T	209218816	2	4	57	1	0	0	0	0	0	0	0	1	12019	813	29	4		4	PIKFYVE	2	209218816	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	232332	209218816	33980557	431	63420											
VWC2L	402117	broad.mit.edu	37	chr2	215278870	215278870	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattcccatggaaggagctGagtatatttaatattaggag	11	4	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215278870	A	A	215278870	1	1	57	0	1	0	0	0	0	0	0	0	17371	1305	45	4		4	VWC2L	2	215278870	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6060054	215278870	27920503	432	63421											
BARD1	580	broad.mit.edu	37	chr2	215661848	215661848	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagaatgttagtactgtttGaagaaattaaaacaatcaag	7	4	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215661848	A	A	215661848	1	1	57	0	1	0	0	0	0	0	0	0	1317	1305	45	4		4	BARD1	2	215661848	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	382978	215661848	27537525	433	63422											
XRCC5	7520	broad.mit.edu	37	chr2	216986777	216986777	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actaactactgttgatctttCttaatagcttgcctttctca	4	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216986777	G	G	216986777	1	3	57	0	1	0	0	0	0	0	0	0	17583	928	32	4		4	XRCC5	2	216986777	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1324929	216986777	26212596	434	63423											
TNS1	7145	broad.mit.edu	37	chr2	218696383	218696383	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggggctggagacggtgccGaggaaccaccctgaggccca	18	12	0	2	rs139160869	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218696383	A	A	218696383	1	1	57	0	1	0	0	0	0	0	0	0	16466	1073	37	4		4	TNS1	2	218696383	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1709606	218696383	24502990	435	63424											
CCDC108	255101	broad.mit.edu	37	chr2	219897313	219897313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcaggagagagccggtGgggagcacctcagatcaggg	18	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219897313	A	A	219897313	1	1	57	0	1	0	0	0	0	0	0	0	2769	1363	47	4		4	CCDC108	2	219897313	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1200930	219897313	23302060	436	63425											
SLC4A3	6508	broad.mit.edu	37	chr2	220505493	220505493	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacgctgtgcactggggccCactggctgctcccctaggtg	15	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220505493	T	T	220505493	1	4	57	0	1	0	0	0	0	0	0	0	14769	609	21	4		4	SLC4A3	2	220505493	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	608180	220505493	22693880	437	63426											
MFF	56947	broad.mit.edu	37	chr2	228197153	228197153	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaaataatgaagatgtttCattttcaagaccagcagatc	8	6	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228197153	T	T	228197153	3	4	57	1	0	0	0	0	1	0	0	0	9612	838	29	4	288	4	MFF	2	228197153	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7691660	228197153	15002220	438	63427											
AGFG1	3267	broad.mit.edu	37	chr2	228356188	228356188	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgttggttagaaataTtttgaattactagatgtgtc	10	2	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228356188	A	A	228356188	1	1	57	0	1	0	0	0	0	0	0	0	380	1508	52	5		5	AGFG1	2	228356188	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	159035	228356188	14843185	439	63428											
AGFG1	3267	broad.mit.edu	37	chr2	228384753	228384753	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagtgaaagagtttctAcaagaaaagtatgaaaagaa	8	3	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228384753	G	G	228384753	2	3	57	1	0	0	0	0	0	0	0	1	380	378	14	5		5	AGFG1	2	228384753	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	28565	228384753	14814620	440	63429											
SPHKAP	80309	broad.mit.edu	37	chr2	228882499	228882499	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcttcaaggttcatggacTcatccacaaccctgttcatc	5	14	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228882499	A	A	228882499	3	1	57	1	0	0	0	0	1	0	0	0	15166	1551	54	5	2055	5	SPHKAP	2	228882499	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	497746	228882499	14316874	441	63430											
SP100	6672	broad.mit.edu	37	chr2	231331600	231331600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcagagatgcccactggGgctaaaattttctcagcctc	9	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231331600	A	A	231331600	1	1	57	0	1	0	0	0	0	0	0	0	15074	1247	43	4		4	SP100	2	231331600	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2449101	231331600	11867773	442	63431											
SP100	6672	broad.mit.edu	37	chr2	231367693	231367693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagttctagacaggatcCtgaaaagttgcatttgaatg	9	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231367693	A	A	231367693	1	1	57	0	1	0	0	0	0	0	0	0	15074	696	24	2		2	SP100	2	231367693	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	36093	231367693	11831680	443	63432											
DIS3L2	129563	broad.mit.edu	37	chr2	232952411	232952411	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatggtgttaagaaactctCagtttgtgtttctgagaaag	11	4	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232952411	T	T	232952411	3	4	57	1	0	0	0	0	1	0	0	0	4577	838	29	4	599	4	DIS3L2	2	232952411	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1584718	232952411	10246962	444	63433											
DIS3L2	129563	broad.mit.edu	37	chr2	233001238	233001238	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaaccggcttcctcaaactCttggctgataagaacagcga	9	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233001238	G	G	233001238	2	3	57	1	0	0	0	0	0	0	0	1	4577	900	32	4		4	DIS3L2	2	233001238	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	48827	233001238	10198135	445	63434											
GIGYF2	26058	broad.mit.edu	37	chr2	233671147	233671147	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaggaaatattttttttctCtttgagtctgaaaggtttct	8	5	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233671147	G	G	233671147	1	3	57	0	1	0	0	0	0	0	0	0	6442	928	32	4		4	GIGYF2	2	233671147	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	669909	233671147	9528226	446	63435											
NDUFA10	4705	broad.mit.edu	37	chr2	240933654	240933654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgttaggaacctggccaCacagcaggaggtgagcaagc	13	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240933654	A	A	240933654	1	1	57	0	1	0	0	0	0	0	0	0	10355	493	17	3		3	NDUFA10	2	240933654	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7262507	240933654	2265719	447	63436											
ANKMY1	51281	broad.mit.edu	37	chr2	241494377	241494377	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctgccactcctgcacaCcctggacgagctggatgtag	10	15	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241494377	A	A	241494377	1	1	57	0	1	0	0	0	0	0	0	0	634	507	18	3		3	ANKMY1	2	241494377	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	560723	241494377	1704996	448	63437											
KIF1A	547	broad.mit.edu	37	chr2	241689976	241689976	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgaaggccctggggagaagCagaggcggcggtcatgggcc	19	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241689976	G	G	241689976	1	3	57	0	1	0	0	0	0	0	0	0	8353	725	25	4		4	KIF1A	2	241689976	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	195599	241689976	1509397	449	63438											
PASK	23178	broad.mit.edu	37	chr2	242066327	242066327	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggctcctgcaaggctcaacTgggacagctgctccttaatc	11	13	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242066327	A	A	242066327	3	1	57	1	0	0	0	0	1	0	0	0	11566	1580	55	5	2004	5	PASK	2	242066327	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	376351	242066327	1133046	450	63439											
SEPT2	4735	broad.mit.edu	37	chr2	242283119	242283119	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcgtgttgccagtgaactCtggggttccctgtgtggagc	14	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242283119	G	G	242283119	1	3	57	0	1	0	0	0	0	0	0	0	14177	928	32	4		4	SEPT2	2	242283119	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	216792	242283119	916254	451	63440											
LRRN1	57633	broad.mit.edu	37	chr3	3887010	3887010	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcaggaatgtatctcactGatattcctggaaatgctttg	10	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3887010	A	A	3887010	3	1	57	1	0	0	0	0	1	0	0	0	9121	1290	45	4	687	4	LRRN1	3	3887010	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08		3887010	194135420	452	63441											
SETD5	55209	broad.mit.edu	37	chr3	9515236	9515236	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggtggtaagtttatatttGatgttttatagttaaattgg	10	0	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9515236	C	C	9515236	1	2	57	0	1	0	0	0	0	0	0	0	14247	1305	45	4		4	SETD5	3	9515236	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5628226	9515236	188507194	453	63442											
BRPF1	7862	broad.mit.edu	37	chr3	9785913	9785913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctctgctccaggcctgGgtcccaacatgtcctcaacc	7	17	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9785913	T	T	9785913	3	4	57	1	0	0	0	0	1	0	0	0	1529	1232	43	2	2671	2	BRPF1	3	9785913	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	270677	9785913	188236517	454	63443											
BRPF1	7862	broad.mit.edu	37	chr3	9785987	9785987	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgttctccaaaaagaacccGaagacagctggaccgcccaa	8	14	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9785987	A	A	9785987	2	1	57	1	0	0	0	0	0	0	0	1	1529	1045	37	4		4	BRPF1	3	9785987	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	74	9785987	188236443	455	63444											
TMEM111	55831	broad.mit.edu	37	chr3	10018617	10018617	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttaaaaatcttccttaaaGatgagtgaagggaacaaaca	8	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10018617	C	C	10018617	1	2	57	0	1	0	0	0	0	0	0	0	16151	957	33	4		4	TMEM111	3	10018617	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	232630	10018617	188003813	456	63445											
TATDN2	9797	broad.mit.edu	37	chr3	10318036	10318036	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggggttgtcgctgtgtcCtctcctaggtatttgagaga	13	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10318036	T	T	10318036	1	4	57	0	1	0	0	0	0	0	0	0	15711	696	24	4		4	TATDN2	3	10318036	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	299419	10318036	187704394	457	63446											
TATDN2	9797	broad.mit.edu	37	chr3	10318219	10318219	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatgaaagaaacacttcctCtgtcaagttgatgaggacag	9	7	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10318219	G	G	10318219	1	3	57	0	1	0	0	0	0	0	0	0	15711	928	32	4		4	TATDN2	3	10318219	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	183	10318219	187704211	458	63447											
HDAC11	79885	broad.mit.edu	37	chr3	13543374	13543374	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctctcctccctggcagtttCtgtttgagcgtgtggagggc	13	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13543374	T	T	13543374	2	4	57	1	0	0	0	0	0	0	0	1	7073	912	32	4		4	HDAC11	3	13543374	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3225155	13543374	184479056	459	63448											
FGD5	152273	broad.mit.edu	37	chr3	14862090	14862090	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaagaaaccggacctgaGgcgggctcgtcagcccctgg	14	14	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14862090	A	A	14862090	2	1	57	1	0	0	0	0	0	0	0	1	5893	991	35	4		4	FGD5	3	14862090	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1318716	14862090	183160340	460	63449											
GALNTL2	117248	broad.mit.edu	37	chr3	16264096	16264096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatctctttctagctgcGctaacaactattgcttctgt	8	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16264096	T	T	16264096	1	4	57	0	1	0	0	0	0	0	0	0	6284	1102	38	3		3	GALNTL2	3	16264096	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1402006	16264096	181758334	461	63450											
KCNH8	131096	broad.mit.edu	37	chr3	19190145	19190145	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttccccttctcccttcttGgcactttcctttcgaaccat	5	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19190145	A	A	19190145	1	1	57	0	1	0	0	0	0	0	0	0	8108	1363	47	4		4	KCNH8	3	19190145	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2926049	19190145	178832285	462	63451											
THRB	7068	broad.mit.edu	37	chr3	24321531	24321531	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaatggttacaaacactTggctgccttagctcaaagat	7	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24321531	A	A	24321531	1	1	57	0	1	0	0	0	0	0	0	0	15998	1827	63	5		5	THRB	3	24321531	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	5131386	24321531	173700899	463	63452											
THRB	7068	broad.mit.edu	37	chr3	24357994	24357994	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcacccttgttcctcctccCccaccacatgctacagttca	3	20	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24357994	G	G	24357994	1	3	57	0	1	0	0	0	0	0	0	0	15998	638	22	4		4	THRB	3	24357994	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	36463	24357994	173664436	464	63453											
TOP2B	7155	broad.mit.edu	37	chr3	25639969	25639969	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagatgtcttcttcggtttCtagattttttttcaatagat	6	5	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25639969	G	G	25639969	1	3	57	0	1	0	0	0	0	0	0	0	16490	927	32	4		4	TOP2B	3	25639969	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1281975	25639969	172382461	465	63454											
OSBPL10	114884	broad.mit.edu	37	chr3	31725491	31725491	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcaacgaagcaaatgactCtctcctctggtgtggcccca	8	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31725491	G	G	31725491	3	3	57	1	0	0	0	0	1	0	0	0	11369	913	32	4	953	4	OSBPL10	3	31725491	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6085522	31725491	166296939	466	63455											
CLASP2	23122	broad.mit.edu	37	chr3	33648210	33648210	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagggaattatataatgtttCagcttcaccaggaaagtggt	10	5	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33648210	T	T	33648210	3	4	57	1	0	0	0	0	1	0	0	0	3486	835	29	4	3045	4	CLASP2	3	33648210	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1922719	33648210	164374220	467	63456											
PDCD6IP	10015	broad.mit.edu	37	chr3	33863496	33863496	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgttgttcaattgtgcAgccttagctagccaaattgc	10	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33863496	G	G	33863496	2	3	57	1	0	0	0	0	0	0	0	1	11718	175	7	5		5	PDCD6IP	3	33863496	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	215286	33863496	164158934	468	63457											
ARPP21	10777	broad.mit.edu	37	chr3	35750658	35750658	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtggcagggaataaaaaGgctggagccagagaacaaat	15	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35750658	A	A	35750658	1	1	57	0	1	0	0	0	0	0	0	0	982	1015	35	4		4	ARPP21	3	35750658	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1887162	35750658	162271772	469	63458											
DLEC1	9940	broad.mit.edu	37	chr3	38136297	38136297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccctcttggagcagggCagggaggcatggggtggagg	20	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38136297	A	A	38136297	1	1	57	0	1	0	0	0	0	0	0	0	4592	725	25	3		3	DLEC1	3	38136297	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2385639	38136297	159886133	470	63459											
SLC22A13	9390	broad.mit.edu	37	chr3	38317320	38317320	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaccaaggcaggctctccctCtgggtggtgtctcgtcaccc	12	15	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38317320	G	G	38317320	1	3	57	0	1	0	0	0	0	0	0	0	14557	928	32	4		4	SLC22A13	3	38317320	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	181023	38317320	159705110	471	63460											
SCN5A	6331	broad.mit.edu	37	chr3	38622506	38622506	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgactcggccacagcgatGggcacacacacgggctctgg	13	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38622506	A	A	38622506	2	1	57	1	0	0	0	0	0	0	0	1	14035	1335	47	4		4	SCN5A	3	38622506	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	305186	38622506	159399924	472	63461											
SCN10A	6336	broad.mit.edu	37	chr3	38770320	38770320	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggttccccagtgcccCcactgagtttccgatgatct	11	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38770320	T	T	38770320	3	4	57	1	0	0	0	0	1	0	0	0	14025	623	22	4	3569	4	SCN10A	3	38770320	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	147814	38770320	159252110	473	63462											
SCN11A	11280	broad.mit.edu	37	chr3	38951721	38951721	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatattggaaacaaacagaGaaataattatgtacgccaca	7	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38951721	C	C	38951721	1	2	57	0	1	0	0	0	0	0	0	0	14026	957	33	4		4	SCN11A	3	38951721	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	181401	38951721	159070709	474	63463											
HHATL	57467	broad.mit.edu	37	chr3	42734465	42734465	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcttgatgggccctcccttCtgagtcccaggggtgatgag	14	12	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42734465	G	G	42734465	1	3	57	0	1	0	0	0	0	0	0	0	7157	928	32	4		4	HHATL	3	42734465	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3782744	42734465	155287965	475	63464											
SNRK	54861	broad.mit.edu	37	chr3	43381716	43381716	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcatttttgttaataaaatGatccatcattactgatcctt	3	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43381716	A	A	43381716	1	1	57	0	1	0	0	0	0	0	0	0	14965	1305	45	4		4	SNRK	3	43381716	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	647251	43381716	154640714	476	63465											
ZNF445	353274	broad.mit.edu	37	chr3	44540961	44540961	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattacattcatagggtttCtcaccagtgtgaattctctg	7	9	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44540961	T	T	44540961	1	4	57	0	1	0	0	0	0	0	0	0	18045	928	32	4		4	ZNF445	3	44540961	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1159245	44540961	153481469	477	63466											
CDCP1	64866	broad.mit.edu	37	chr3	45153867	45153867	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccagatgaaagttctgttGagggtaggcaacaacgatgt	12	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45153867	A	A	45153867	2	1	57	1	0	0	0	0	0	0	0	1	3123	1277	45	4		4	CDCP1	3	45153867	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	612906	45153867	152868563	478	63467											
LRRC2	79442	broad.mit.edu	37	chr3	46586801	46586801	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggactggccatcacctgcctAgagaagtgagtcagccacct	11	13	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46586801	T	T	46586801	1	4	57	0	1	0	0	0	0	0	0	0	9063	435	15	5		5	LRRC2	3	46586801	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1432934	46586801	151435629	479	63468											
SMARCC1	6599	broad.mit.edu	37	chr3	47705006	47705006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctactcagggggctgaggCgagaggatctcttgagccca	15	10	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47705006	T	T	47705006	1	4	57	0	1	0	0	0	0	0	0	0	14889	783	27	4		4	SMARCC1	3	47705006	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1118205	47705006	150317424	480	63469											
DHX30	22907	broad.mit.edu	37	chr3	47883200	47883200	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttctggccaaggtgattcaGattgcaacgtcatcctccac	8	13	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47883200	C	C	47883200	3	2	57	1	0	0	0	0	1	0	0	0	4544	933	33	4	795	4	DHX30	3	47883200	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	178194	47883200	150139230	481	63470											
MAP4	4134	broad.mit.edu	37	chr3	47950523	47950523	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatttccccatggcaggttCataccagcggacttcagttg	9	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47950523	T	T	47950523	1	4	57	0	1	0	0	0	0	0	0	0	9350	841	29	4		4	MAP4	3	47950523	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	67323	47950523	150071907	482	63471											
PLXNB1	5364	broad.mit.edu	37	chr3	48464794	48464794	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagcacttaatatttgctGatctgatcatcctcgtgcta	8	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48464794	A	A	48464794	1	1	57	0	1	0	0	0	0	0	0	0	12218	1305	45	4		4	PLXNB1	3	48464794	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	514271	48464794	149557636	483	63472											
LAMB2	3913	broad.mit.edu	37	chr3	49159114	49159114	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggctctgcctcaaccCacctgctcagcctcctgggc	9	19	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49159114	A	A	49159114	1	1	57	0	1	0	0	0	0	0	0	0	8683	609	21	2		2	LAMB2	3	49159114	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	694320	49159114	148863316	484	63473											
RBM6	10180	broad.mit.edu	37	chr3	50107848	50107848	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccccactccccaattccctCaggtggcaatctcaggtctg	7	17	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50107848	T	T	50107848	1	4	57	0	1	0	0	0	0	0	0	0	13252	841	29	4		4	RBM6	3	50107848	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	948734	50107848	147914582	485	63474											
PARP3	10039	broad.mit.edu	37	chr3	51978223	51978223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacctgctggaaccactGgggccgtgtggtgagtgccc	14	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51978223	T	T	51978223	3	4	57	1	0	0	0	0	1	0	0	0	11556	1357	47	2	333	2	PARP3	3	51978223	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1870375	51978223	146044207	486	63475											
CACNA1D	776	broad.mit.edu	37	chr3	53806857	53806857	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaagtgccttttctctccCaggcgctcccgtatgtggcc	10	16	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53806857	T	T	53806857	1	4	57	0	1	0	0	0	0	0	0	0	2567	609	21	4		4	CACNA1D	3	53806857	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1828634	53806857	144215573	487	63476											
CACNA2D3	55799	broad.mit.edu	37	chr3	54186083	54186083	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttatgctactatgatcccGgtctacaccattcccacagg	7	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54186083	C	C	54186083	1	2	57	0	1	0	0	0	0	0	0	0	2576	1131	39	4		4	CACNA2D3	3	54186083	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	379226	54186083	143836347	488	63477											
LRTM1	57408	broad.mit.edu	37	chr3	54952844	54952844	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggcagggctggtacagcTcatgagggatcctaaggagg	18	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54952844	G	G	54952844	3	3	57	1	0	0	0	0	1	0	0	0	9131	1551	54	5	361	5	LRTM1	3	54952844	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	766761	54952844	143069586	489	63478											
ADAMTS9	56999	broad.mit.edu	37	chr3	64524897	64524897	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtgggcacttggcagcGctgtagcaatccccggctgt	13	13	0	0	rs148016958		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64524897	A	A	64524897	2	1	57	1	0	0	0	0	0	0	0	1	273	1078	38	4		4	ADAMTS9	3	64524897	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9572053	64524897	133497533	490	63479											
ADAMTS9	56999	broad.mit.edu	37	chr3	64592818	64592818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctttcccttactttccCcataacattctgcaagagag	4	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64592818	A	A	64592818	1	1	57	0	1	0	0	0	0	0	0	0	273	638	22	2		2	ADAMTS9	3	64592818	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	67921	64592818	133429612	491	63480											
FRMD4B	23150	broad.mit.edu	37	chr3	69242992	69242992	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accagcttttgttgtattagAaaattactctccagttcttg	6	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69242992	T	T	69242992	3	4	57	1	0	0	0	0	1	0	0	0	6112	243	9	5	1611	5	FRMD4B	3	69242992	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	4650174	69242992	128779438	492	63481											
FRMD4B	23150	broad.mit.edu	37	chr3	69351425	69351425	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatgtaaaaaatagcaaaGaaaacacacaaaaacccaaa	4	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69351425	T	T	69351425	1	4	57	0	1	0	0	0	0	0	0	0	6112	957	33	3		3	FRMD4B	3	69351425	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	108433	69351425	128671005	493	63482											
FOXP1	27086	broad.mit.edu	37	chr3	71037287	71037287	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatgcatggctcttaacacCaaaaatgatacatattacaa	5	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71037287	G	G	71037287	1	3	57	0	1	0	0	0	0	0	0	0	6086	609	21	4		4	FOXP1	3	71037287	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1685862	71037287	126985143	494	63483											
SHQ1	55164	broad.mit.edu	37	chr3	72822596	72822596	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccatcaccaaaatcggaGtgatcagagtgttcagaaag	9	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72822596	C	C	72822596	1	2	57	0	1	0	0	0	0	0	0	0	14405	1044	36	4		4	SHQ1	3	72822596	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1785309	72822596	125199834	495	63484											
CADM2	253559	broad.mit.edu	37	chr3	86010712	86010712	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagctaaacattcttttcctGaacaaaacggataatggtac	7	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86010712	A	A	86010712	2	1	57	1	0	0	0	0	0	0	0	1	2593	1277	45	4		4	CADM2	3	86010712	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	13188116	86010712	112011718	496	63485											
EPHA3	2042	broad.mit.edu	37	chr3	89480446	89480446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagtaacttggtgtgtaaGgtttctgatttcggactttc	10	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89480446	T	T	89480446	3	4	57	1	0	0	0	0	1	0	0	0	5210	991	35	2	2359	2	EPHA3	3	89480446	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3469734	89480446	108541984	497	63486											
NSUN3	63899	broad.mit.edu	37	chr3	93795220	93795220	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcagtgtgagcgtcaactGagtggcttggtttggaagta	15	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93795220	A	A	93795220	1	1	57	0	1	0	0	0	0	0	0	0	10774	1305	45	4		4	NSUN3	3	93795220	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4314774	93795220	104227210	498	63487											
EPHA6	285220	broad.mit.edu	37	chr3	97015540	97015540	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtaccatggccctgttgtGaggggtagcaggattgctgt	16	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97015540	C	C	97015540	1	2	57	0	1	0	0	0	0	0	0	0	5213	1305	45	4		4	EPHA6	3	97015540	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3220320	97015540	101006890	499	63488											
EPHA6	285220	broad.mit.edu	37	chr3	97200310	97200310	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcagttaaaaatatttcaGaggcaataaggaaggcacaa	9	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97200310	C	C	97200310	1	2	57	0	1	0	0	0	0	0	0	0	5213	957	33	4		4	EPHA6	3	97200310	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	184770	97200310	100822120	500	63489											
CPOX	1371	broad.mit.edu	37	chr3	98310068	98310068	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgaaagcaacacttgcatGaagatggttattttcccgtt	8	8	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98310068	A	A	98310068	1	1	57	0	1	0	0	0	0	0	0	0	3853	1305	45	4		4	CPOX	3	98310068	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1109758	98310068	99712362	501	63490											
DCBLD2	131566	broad.mit.edu	37	chr3	98519390	98519390	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcctaagcagtttctccctCtgcctggtaccagaaggctg	10	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98519390	G	G	98519390	1	3	57	0	1	0	0	0	0	0	0	0	4314	928	32	4		4	DCBLD2	3	98519390	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	209322	98519390	99503040	502	63491											
TMEM45A	55076	broad.mit.edu	37	chr3	100270784	100270784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgcctccttattacatcCtgatggatgtgctgagatat	8	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100270784	T	T	100270784	1	4	57	0	1	0	0	0	0	0	0	0	16292	696	24	4		4	TMEM45A	3	100270784	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1751394	100270784	97751646	503	63492											
GPR128	84873	broad.mit.edu	37	chr3	100362407	100362407	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctagttcaacatttatAcatacaaatgtggatggcct	7	7	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100362407	G	G	100362407	3	3	57	1	0	0	0	0	1	0	0	0	6706	381	14	5	906	5	GPR128	3	100362407	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	91623	100362407	97660023	504	63493											
TFG	10342	broad.mit.edu	37	chr3	100463679	100463679	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtgtgtgtgttttcaggtCagatgtaccaacagtaccag	12	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100463679	T	T	100463679	4	4	57	1	0	0	0	0	0	1	0	0	15929	827	29	4	746	4	TFG	3	100463679	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	101272	100463679	97558751	505	63494											
ABI3BP	25890	broad.mit.edu	37	chr3	100630515	100630515	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttttataacctagttgttCagaaatatccagattggcaa	7	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100630515	T	T	100630515	1	4	57	0	1	0	0	0	0	0	0	0	91	841	29	4		4	ABI3BP	3	100630515	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	166836	100630515	97391915	506	63495											
IMPG2	50939	broad.mit.edu	37	chr3	100949985	100949985	+	Frame_Shift_Del	DEL	G	-	-													ccaccagttctcacccacccGgcacctgcaaccaacagtca							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100949985	-	-	100949985	7	5	57	1	0	1	0	1	0	0	0	0	7799	1115	39	0	503	0	IMPG2	3	100949985	Frame_Shift_Del	DEL	G	TCGA-17-Z026-01A-01W-0746-08	319470	100949985	97072445	507	63496											
ZPLD1	131368	broad.mit.edu	37	chr3	101850234	101850234	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacaaacctgcacatgtacCtctaaaactaaaaagttaaa	3	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101850234	G	G	101850234	1	3	57	0	1	0	0	0	0	0	0	0	18350	696	24	4		4	ZPLD1	3	101850234	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	900249	101850234	96172196	508	63497											
ZPLD1	131368	broad.mit.edu	37	chr3	102189268	102189268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagaaaggagagatgctGggaggaggacgacttggagc	18	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102189268	T	T	102189268	3	4	57	1	0	0	0	0	1	0	0	0	18350	1348	47	2	1046	2	ZPLD1	3	102189268	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	339034	102189268	95833162	509	63498											
ZPLD1	131368	broad.mit.edu	37	chr3	102196379	102196379	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagttacgagcttttctcttCttctgtgctcactggccctt	8	12	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102196379	A	A	102196379	3	1	57	1	0	0	0	0	1	0	0	0	18350	913	32	3	1255	3	ZPLD1	3	102196379	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7111	102196379	95826051	510	63499											
CCDC54	84692	broad.mit.edu	37	chr3	107096565	107096565	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcggcaccaagattcaactgGatatcccactgtgacatctg	8	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107096565	A	A	107096565	3	1	57	1	0	0	0	0	1	0	0	0	2852	1174	41	4	133	4	CCDC54	3	107096565	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4900186	107096565	90925865	511	63500											
MYH15	22989	broad.mit.edu	37	chr3	108183535	108183535	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcttcaaatttcttcttatCaggcttgggcttctggagat	9	8	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108183535	G	G	108183535	3	3	57	1	0	0	0	0	1	0	0	0	10128	826	29	4	4207	4	MYH15	3	108183535	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1086970	108183535	89838895	512	63501											
MYH15	22989	broad.mit.edu	37	chr3	108209097	108209097	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaataattgtctcgttTgcagagctttccccatttgg	8	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108209097	C	C	108209097	1	2	57	0	1	0	0	0	0	0	0	0	10128	1827	63	5		5	MYH15	3	108209097	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	25562	108209097	89813333	513	63502											
GUCA1C	9626	broad.mit.edu	37	chr3	108635132	108635132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttgcaacatttctgctcCgatgtgacagaatttgggga	10	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108635132	A	A	108635132	1	1	57	0	1	0	0	0	0	0	0	0	6955	667	23	1		1	GUCA1C	3	108635132	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	426035	108635132	89387298	514	63503											
MORC1	27136	broad.mit.edu	37	chr3	108836923	108836923	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgccctcgaacacgaccCgcgcaactcaaggggacaag	10	16	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108836923	A	A	108836923	1	1	57	0	1	0	0	0	0	0	0	0	9795	667	23	1		1	MORC1	3	108836923	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	201791	108836923	89185507	515	63504											
CD96	10225	broad.mit.edu	37	chr3	111289891	111289891	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcggcttgtaggagggaGgtccctccaggctgtggggt	18	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111289891	A	A	111289891	1	1	57	0	1	0	0	0	0	0	0	0	3078	1015	35	4		4	CD96	3	111289891	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2452968	111289891	86732539	516	63505											
PHLDB2	90102	broad.mit.edu	37	chr3	111631902	111631902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgctgatgtgtgctagGgccagccctgtgatatacca	13	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111631902	T	T	111631902	1	4	57	0	1	0	0	0	0	0	0	0	11947	1247	43	2		2	PHLDB2	3	111631902	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	342011	111631902	86390528	517	63506											
SLC9A10	285335	broad.mit.edu	37	chr3	111873979	111873979	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccaactatcagattagatCagattcaaatcacactcagg	6	10	5	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111873979	T	T	111873979	1	4	57	0	1	0	0	0	0	0	0	0	14824	841	29	4		4	SLC9A10	3	111873979	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	242077	111873979	86148451	518	63507											
CD200R1	131450	broad.mit.edu	37	chr3	112666617	112666617	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agataatacagataatgcatGagacaattcaagatccaaaa	6	6	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112666617	C	C	112666617	1	2	57	0	1	0	0	0	0	0	0	0	3011	1305	45	4		4	CD200R1	3	112666617	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	792638	112666617	85355813	519	63508											
C3orf17	25871	broad.mit.edu	37	chr3	112727076	112727076	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaagaagtttgttacccaGaaaaatggcctgagccttga	9	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112727076	C	C	112727076	3	2	57	1	0	0	0	0	1	0	0	0	2232	933	33	4	534	4	C3orf17	3	112727076	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	60459	112727076	85295354	520	63509											
BOC	91653	broad.mit.edu	37	chr3	112989521	112989521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcttgtggggactcagGtggacatcagctcctagtgc	13	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112989521	T	T	112989521	1	4	57	0	1	0	0	0	0	0	0	0	1487	1276	44	3		3	BOC	3	112989521	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	262445	112989521	85032909	521	63510											
DRD3	1814	broad.mit.edu	37	chr3	113847806	113847806	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtaagggatttgcttactCcttttgttataacatgagaa	10	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113847806	A	A	113847806	1	1	57	0	1	0	0	0	0	0	0	0	4798	870	30	3		3	DRD3	3	113847806	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	858285	113847806	84174624	522	63511											
DRD3	1814	broad.mit.edu	37	chr3	113878555	113878555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcacaatctgtctctcccCacttccccagcttttgggcc	7	17	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113878555	A	A	113878555	1	1	57	0	1	0	0	0	0	0	0	0	4798	609	21	2		2	DRD3	3	113878555	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	30749	113878555	84143875	523	63512											
TIGIT	201633	broad.mit.edu	37	chr3	114018393	114018393	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaggctgccctggggaaatCagcttcacttctggcttctg	11	12	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114018393	G	G	114018393	1	3	57	0	1	0	0	0	0	0	0	0	16025	841	29	4		4	TIGIT	3	114018393	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	139838	114018393	84004037	524	63513											
LSAMP	4045	broad.mit.edu	37	chr3	115775892	115775892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgcatatatcatttaccCaaagcctgaccttgtctgtg	7	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115775892	A	A	115775892	1	1	57	0	1	0	0	0	0	0	0	0	9135	609	21	2		2	LSAMP	3	115775892	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1757499	115775892	82246538	525	63514											
LSAMP	4045	broad.mit.edu	37	chr3	116163701	116163701	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgtgtagacgcgcgcagcaGaaaagttgcccgaaagccct	12	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116163701	C	C	116163701	1	2	57	0	1	0	0	0	0	0	0	0	9135	957	33	4		4	LSAMP	3	116163701	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	387809	116163701	81858729	526	63515											
CD80	941	broad.mit.edu	37	chr3	119263473	119263473	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcagaacaacacactcGtatgtgccctcgtcagatgg	8	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119263473	T	T	119263473	4	4	57	1	0	0	0	0	0	1	0	0	3068	1140	40	3	540	3	CD80	3	119263473	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3099772	119263473	78758957	527	63516											
C3orf15	89876	broad.mit.edu	37	chr3	119422091	119422091	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaggaccgccgcagaccttCctccgcgtccgtcgcctcct	9	19	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119422091	T	T	119422091	1	4	57	0	1	0	0	0	0	0	0	0	2231	870	30	4		4	C3orf15	3	119422091	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	158618	119422091	78600339	528	63517											
GSK3B	2932	broad.mit.edu	37	chr3	119595286	119595286	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaggatgtgccttaatttGagggaatttaaattctgtgt	10	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119595286	C	C	119595286	3	2	57	1	0	0	0	0	1	0	0	0	6890	1299	45	4	438	4	GSK3B	3	119595286	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	173195	119595286	78427144	529	63518											
RABL3	285282	broad.mit.edu	37	chr3	120428434	120428434	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaatagaaacacttaatgTttaatgttctgaattagatg	6	3	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120428434	A	A	120428434	1	1	57	0	1	0	0	0	0	0	0	0	13080	1740	60	5		5	RABL3	3	120428434	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	833148	120428434	77593996	530	63519											
GTF2E1	2960	broad.mit.edu	37	chr3	120469615	120469615	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaagggagacaagtttatCaaatgcagaatgagggtaga	12	3	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120469615	G	G	120469615	3	3	57	1	0	0	0	0	1	0	0	0	6921	816	29	4	218	4	GTF2E1	3	120469615	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	41181	120469615	77552815	531	63520											
STXBP5L	9515	broad.mit.edu	37	chr3	120764330	120764330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacacttcatttgtggaacCttagacaaaaaaggccagcc	7	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120764330	A	A	120764330	3	1	57	1	0	0	0	0	1	0	0	0	15475	681	24	2	432	2	STXBP5L	3	120764330	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	294715	120764330	77258100	532	63521											
POLQ	10721	broad.mit.edu	37	chr3	121263644	121263644	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgcctgccattcaaacatCttttttacaccaaaactgtg	4	12	3	0	rs61757738	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121263644	G	G	121263644	3	3	57	1	0	0	0	0	1	0	0	0	12303	912	32	4	7615	4	POLQ	3	121263644	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	499314	121263644	76758786	533	63522											
ARGFX	503582	broad.mit.edu	37	chr3	121303519	121303519	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactgagtacacagaaaattGaagaggtaactcatgtccta	9	7	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121303519	A	A	121303519	1	1	57	0	1	0	0	0	0	0	0	0	861	1305	45	4		4	ARGFX	3	121303519	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	39875	121303519	76718911	534	63523											
ARGFX	503582	broad.mit.edu	37	chr3	121303853	121303853	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagccagaccatgttcccaGatagaaatcttcaggagaaa	8	9	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121303853	A	A	121303853	3	1	57	1	0	0	0	0	1	0	0	0	861	942	33	4	320	4	ARGFX	3	121303853	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	334	121303853	76718577	535	63524											
ARGFX	503582	broad.mit.edu	37	chr3	121305236	121305236	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatgagatatccagctcttCtttccactgtctgtatcagt	7	10	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121305236	G	G	121305236	3	3	57	1	0	0	0	0	1	0	0	0	861	913	32	4	751	4	ARGFX	3	121305236	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1383	121305236	76717194	536	63525											
CASR	846	broad.mit.edu	37	chr3	121994736	121994736	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgagtgtggtgacctGgtggggaactattccatcat	13	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121994736	A	A	121994736	2	1	57	1	0	0	0	0	0	0	0	1	2708	1335	47	4		4	CASR	3	121994736	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	689500	121994736	76027694	537	63526											
PARP9	83666	broad.mit.edu	37	chr3	122269754	122269754	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtccaccttcaccctccctCagggttcgtgtccctgcctc	7	19	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122269754	T	T	122269754	1	4	57	0	1	0	0	0	0	0	0	0	11560	841	29	4		4	PARP9	3	122269754	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	275018	122269754	75752676	538	63527											
ADCY5	111	broad.mit.edu	37	chr3	123022044	123022044	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgccaagcagcccagcAggtccctggagttgcacgtg	13	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123022044	T	T	123022044	3	4	57	1	0	0	0	0	1	0	0	0	297	188	7	5	1235	5	ADCY5	3	123022044	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	752290	123022044	75000386	539	63528											
ADCY5	111	broad.mit.edu	37	chr3	123051504	123051504	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccaggctggtgaagccctcGatgtcagcaaacaggatgct	13	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123051504	A	A	123051504	2	1	57	1	0	0	0	0	0	0	0	1	297	1048	37	4		4	ADCY5	3	123051504	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	29460	123051504	74970926	540	63529											
ADCY5	111	broad.mit.edu	37	chr3	123051537	123051537	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggatgctgggggacaggcaGaggaggaagaccctgctata	17	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123051537	T	T	123051537	1	4	57	0	1	0	0	0	0	0	0	0	297	957	33	3		3	ADCY5	3	123051537	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	33	123051537	74970893	541	63530											
KALRN	8997	broad.mit.edu	37	chr3	123857393	123857393	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaatgccagggtcaaagatGaaaagagtgactgaggcagg	14	6	2	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123857393	T	T	123857393	1	4	57	0	1	0	0	0	0	0	0	0	8045	1305	45	3		3	KALRN	3	123857393	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	805856	123857393	74165037	542	63531											
KALRN	8997	broad.mit.edu	37	chr3	124160708	124160708	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaagcaaaagaaaatatgGaaggaaggagggtatgcctt	12	3	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124160708	T	T	124160708	1	4	57	0	1	0	0	0	0	0	0	0	8045	1189	41	3		3	KALRN	3	124160708	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	303315	124160708	73861722	543	63532											
HEG1	57493	broad.mit.edu	37	chr3	124731846	124731846	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagatgctgtgcttgacagGgtgccaggagtggtcataag	16	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124731846	A	A	124731846	2	1	57	1	0	0	0	0	0	0	0	1	7111	1219	43	4		4	HEG1	3	124731846	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	571138	124731846	73290584	544	63533											
SLC12A8	84561	broad.mit.edu	37	chr3	124854796	124854796	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accatctaccttcccacttcTagggttgacttttgtgtgct	7	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124854796	C	C	124854796	1	2	57	0	1	0	0	0	0	0	0	0	14502	1537	53	5		5	SLC12A8	3	124854796	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	122950	124854796	73167634	545	63534											
SNX4	8723	broad.mit.edu	37	chr3	125188347	125188347	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccatcacccatttctttttCtatggcactccattcactag	3	14	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125188347	T	T	125188347	3	4	57	1	0	0	0	0	1	0	0	0	15018	922	32	4	571	4	SNX4	3	125188347	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	333551	125188347	72834083	546	63535											
ROPN1B	152015	broad.mit.edu	37	chr3	125701153	125701153	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatagtgtgtgaggtcttatCatgtgaccacaatggtgggt	14	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125701153	T	T	125701153	3	4	57	1	0	0	0	0	1	0	0	0	13635	838	29	4	451	4	ROPN1B	3	125701153	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	512806	125701153	72321277	547	63536											
ALDH1L1	10840	broad.mit.edu	37	chr3	125831734	125831734	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcatccccttcagagaaTggacaagaacaccaggtcac	7	13	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125831734	C	C	125831734	1	2	57	0	1	0	0	0	0	0	0	0	494	1479	51	5		5	ALDH1L1	3	125831734	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	130581	125831734	72190696	548	63537											
CNBP	7555	broad.mit.edu	37	chr3	128889865	128889865	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttccatttatagctaattCatctctggaagaatctctgc	5	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128889865	T	T	128889865	1	4	57	0	1	0	0	0	0	0	0	0	3624	841	29	4		4	CNBP	3	128889865	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3058131	128889865	69132565	549	63538											
PLXND1	23129	broad.mit.edu	37	chr3	129281583	129281583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcaaggcaggggccagccCcggctgaagcgcctgacacg	15	15	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129281583	A	A	129281583	1	1	57	0	1	0	0	0	0	0	0	0	12222	638	22	2		2	PLXND1	3	129281583	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	391718	129281583	68740847	550	63539											
TMCC1	23023	broad.mit.edu	37	chr3	129389319	129389319	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgcatcaaatcctgagctCtgcatgtccagggtgtttgt	11	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129389319	G	G	129389319	3	3	57	1	0	0	0	0	1	0	0	0	16115	912	32	4	608	4	TMCC1	3	129389319	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	107736	129389319	68633111	551	63540											
COL6A6	131873	broad.mit.edu	37	chr3	130346069	130346069	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcctgcttttcctttaTcaaaccaaaaagctggcaat	6	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130346069	A	A	130346069	1	1	57	0	1	0	0	0	0	0	0	0	3735	1450	50	5		5	COL6A6	3	130346069	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	956750	130346069	67676361	552	63541											
ATP2C1	27032	broad.mit.edu	37	chr3	130656229	130656229	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatacagttaacagttacttCtcaagttaatgtctgattta	5	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130656229	T	T	130656229	1	4	57	0	1	0	0	0	0	0	0	0	1147	928	32	4		4	ATP2C1	3	130656229	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	310160	130656229	67366201	553	63542											
CPNE4	131034	broad.mit.edu	37	chr3	131287511	131287513	+	Intron	DEL	AAG	-	-													ctttgcaaaccttgtaaagtAagaatgcaaaatgccccctc					rs10611460		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131287513	-	-	131287511	6	5	57	0	1	1	0	1	0	0	0	0	3846	377	13	0		0	CPNE4	3	131287511	Intron	DEL	AAG	TCGA-17-Z026-01A-01W-0746-08	631282	131287511	66734919	554	63543											
CPNE4	131034	broad.mit.edu	37	chr3	131415477	131415477	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctaaaggaaaaagcacAcatcagctgcaatagagggt	9	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131415477	G	G	131415477	1	3	57	0	1	0	0	0	0	0	0	0	3846	174	6	5		5	CPNE4	3	131415477	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	127966	131415477	66606953	555	63544											
CPNE4	131034	broad.mit.edu	37	chr3	131434755	131434755	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgatttcttttgggcaacaGaaatctaaggaaggtctcaa	9	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131434755	A	A	131434755	1	1	57	0	1	0	0	0	0	0	0	0	3846	957	33	4		4	CPNE4	3	131434755	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	19278	131434755	66587675	556	63545											
CPNE4	131034	broad.mit.edu	37	chr3	131442188	131442188	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgttaaagaaaatacaatCaataggaaaaagcaaggatt	7	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131442188	G	G	131442188	1	3	57	0	1	0	0	0	0	0	0	0	3846	841	29	4		4	CPNE4	3	131442188	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7433	131442188	66580242	557	63546											
BFSP2	8419	broad.mit.edu	37	chr3	133118913	133118913	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaacccactgggcaccacaGaggcagaaggggtgatgagt	14	9	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133118913	A	A	133118913	1	1	57	0	1	0	0	0	0	0	0	0	1422	957	33	4		4	BFSP2	3	133118913	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1676725	133118913	64903517	558	63547											
TOPBP1	11073	broad.mit.edu	37	chr3	133342989	133342989	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttggccgcccttgatagatGaaatgagtcactgtttcatc	9	9	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133342989	A	A	133342989	2	1	57	1	0	0	0	0	0	0	0	1	16493	1281	45	4		4	TOPBP1	3	133342989	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	224076	133342989	64679441	559	63548											
CEP63	80254	broad.mit.edu	37	chr3	134281647	134281647	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctggaacttctggtttcCtctctacctcatcctccact	5	16	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134281647	A	A	134281647	1	1	57	0	1	0	0	0	0	0	0	0	3287	696	24	2		2	CEP63	3	134281647	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	938658	134281647	63740783	560	63549											
EPHB1	2047	broad.mit.edu	37	chr3	134851763	134851763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggcctgacggagtgccGcgtctccatcagcagcctgt	14	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134851763	T	T	134851763	3	4	57	1	0	0	0	0	1	0	0	0	5216	1087	38	3	1187	3	EPHB1	3	134851763	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	570116	134851763	63170667	561	63550											
EPHB1	2047	broad.mit.edu	37	chr3	134911334	134911334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaattccacttggggcaCcattgttctccattagatga	7	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134911334	A	A	134911334	1	1	57	0	1	0	0	0	0	0	0	0	5216	522	18	3		3	EPHB1	3	134911334	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	59571	134911334	63111096	562	63551											
EPHB1	2047	broad.mit.edu	37	chr3	134920107	134920107	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggtttgagatgtaatttgGagacaaaattgacagggctt	13	3	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134920107	T	T	134920107	1	4	57	0	1	0	0	0	0	0	0	0	5216	1189	41	3		3	EPHB1	3	134920107	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	8773	134920107	63102323	563	63552											
PPP2R3A	5523	broad.mit.edu	37	chr3	135745969	135745969	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actactaaatgatttacaatCtccccttctttagaaaccct	2	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135745969	T	T	135745969	1	4	57	0	1	0	0	0	0	0	0	0	12489	928	32	4		4	PPP2R3A	3	135745969	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	825862	135745969	62276461	564	63553											
PPP2R3A	5523	broad.mit.edu	37	chr3	135768023	135768023	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtggccttcagatcaaactGaaattactaactattgatgt	7	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135768023	A	A	135768023	1	1	57	0	1	0	0	0	0	0	0	0	12489	1305	45	4		4	PPP2R3A	3	135768023	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	22054	135768023	62254407	565	63554											
PPP2R3A	5523	broad.mit.edu	37	chr3	135797492	135797492	+	Intron	DEL	T	-	-													gaagagaataataagggatcTctgcctgaaggcatgcactc					rs111928165		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135797492	-	-	135797492	6	5	57	0	1	1	0	1	0	0	0	0	12489	1566	54	0		0	PPP2R3A	3	135797492	Intron	DEL	T	TCGA-17-Z026-01A-01W-0746-08	29469	135797492	62224938	566	63555											
IL20RB	53833	broad.mit.edu	37	chr3	136674589	136674589	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcatatcttaccttgcaaGtctgttgtataatatatgga	6	6	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136674589	T	T	136674589	1	4	57	0	1	0	0	0	0	0	0	0	7739	1044	36	3		3	IL20RB	3	136674589	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	877097	136674589	61347841	567	63556											
RBP2	5948	broad.mit.edu	37	chr3	139173649	139173649	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcacacacacaaggacAtcaccttcccaggtgaccag	7	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139173649	T	T	139173649	3	4	57	1	0	0	0	0	1	0	0	0	13264	214	8	5	136	5	RBP2	3	139173649	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2499060	139173649	58848781	568	63557											
RBP1	5947	broad.mit.edu	37	chr3	139237323	139237323	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcccctccttctcacccttCtgcacacactggagcttgtc	6	19	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139237323	T	T	139237323	2	4	57	1	0	0	0	0	0	0	0	1	13263	912	32	4		4	RBP1	3	139237323	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	63674	139237323	58785107	569	63558											
CLSTN2	64084	broad.mit.edu	37	chr3	140122473	140122473	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttccatccttctgcagggGaaatctgtgcgttcaagatc	9	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140122473	A	A	140122473	3	1	57	1	0	0	0	0	1	0	0	0	3594	1175	41	4	245	4	CLSTN2	3	140122473	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	885150	140122473	57899957	570	63559											
CLSTN2	64084	broad.mit.edu	37	chr3	140265300	140265300	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatggccaagtggtgccttGaggtgctgtttcctacccag	13	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140265300	C	C	140265300	1	2	57	0	1	0	0	0	0	0	0	0	3594	1305	45	4		4	CLSTN2	3	140265300	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	142827	140265300	57757130	571	63560											
CLSTN2	64084	broad.mit.edu	37	chr3	140283002	140283002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaggtgatcctcatgcaCggctgggagttctgggtggg	18	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140283002	A	A	140283002	1	1	57	0	1	0	0	0	0	0	0	0	3594	551	19	3		3	CLSTN2	3	140283002	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	17702	140283002	57739428	572	63561											
GK5	256356	broad.mit.edu	37	chr3	141901976	141901976	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtctcacttattgtactctCatgattaaacatcttcgttt	4	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141901976	T	T	141901976	1	4	57	0	1	0	0	0	0	0	0	0	6486	841	29	4		4	GK5	3	141901976	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1618974	141901976	56120454	573	63562											
XRN1	54464	broad.mit.edu	37	chr3	142094782	142094782	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgctttatggtctccatGagggctgaatttaaaccaca	8	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142094782	A	A	142094782	3	1	57	1	0	0	0	0	1	0	0	0	17586	1290	45	4	2356	4	XRN1	3	142094782	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	192806	142094782	55927648	574	63563											
PLOD2	5352	broad.mit.edu	37	chr3	145804659	145804659	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttcatgcttagctttatCaaaaaataccttgatgtcct	5	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145804659	G	G	145804659	3	3	57	1	0	0	0	0	1	0	0	0	12197	826	29	4	1278	4	PLOD2	3	145804659	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3709877	145804659	52217771	575	63564											
PLSCR5	389158	broad.mit.edu	37	chr3	146323146	146323146	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttacatataacagaggaaggGagtcccttgctgtttctaga	10	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146323146	A	A	146323146	1	1	57	0	1	0	0	0	0	0	0	0	12208	1189	41	4		4	PLSCR5	3	146323146	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	518487	146323146	51699284	576	63565											
WWTR1	25937	broad.mit.edu	37	chr3	149245727	149245727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcaagagtctcagcttcCatggggagctgtcgacagag	16	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149245727	A	A	149245727	3	1	57	1	0	0	0	0	1	0	0	0	17544	594	21	2	413	2	WWTR1	3	149245727	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2922581	149245727	48776703	577	63566											
SERP1	27230	broad.mit.edu	37	chr3	150263591	150263591	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagcgaaaatccaccatttCagatgcagagaaaccactcg	7	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150263591	T	T	150263591	1	4	57	0	1	0	0	0	0	0	0	0	14197	841	29	4		4	SERP1	3	150263591	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1017864	150263591	47758839	578	63567											
FAM194A	131831	broad.mit.edu	37	chr3	150387366	150387366	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaggtactatattaatacAaaagattttatgctttttat	7	3	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150387366	T	T	150387366	1	4	57	0	1	0	0	0	0	0	0	0	5573	145	5	5		5	FAM194A	3	150387366	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	123775	150387366	47635064	579	63568											
FAM194A	131831	broad.mit.edu	37	chr3	150399978	150399978	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtttaaagataatactatttCcacagtaaacctgacttaga	5	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150399978	A	A	150399978	1	1	57	0	1	0	0	0	0	0	0	0	5573	870	30	3		3	FAM194A	3	150399978	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12612	150399978	47622452	580	63569											
IGSF10	285313	broad.mit.edu	37	chr3	151171376	151171376	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcaaagagacaaatgtatCtgggtggagcttagtgagct	13	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151171376	T	T	151171376	3	4	57	1	0	0	0	0	1	0	0	0	7667	913	32	4	7424	4	IGSF10	3	151171376	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	771398	151171376	46851054	581	63570											
SGEF	26084	broad.mit.edu	37	chr3	153847397	153847397	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcaaaactacaaggaaaaGgcccttgacattgattctga	7	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153847397	C	C	153847397	3	2	57	1	0	0	0	0	1	0	0	0	14318	991	35	4	1168	4	SGEF	3	153847397	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2676021	153847397	44175033	582	63571											
TIPARP	25976	broad.mit.edu	37	chr3	156413761	156413761	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattcattcttcaggagagaGataaaaaggagacccctctt	8	8	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156413761	C	C	156413761	3	2	57	1	0	0	0	0	1	0	0	0	16047	933	33	4	1204	4	TIPARP	3	156413761	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2566364	156413761	41608669	583	63572											
LEKR1	389170	broad.mit.edu	37	chr3	156710979	156710979	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagaagacataaagagaaGaattaaccttgcagaaaatg	9	4	0	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156710979	A	A	156710979	3	1	57	1	0	0	0	0	1	0	0	0	8789	942	33	4	1052	4	LEKR1	3	156710979	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	297218	156710979	41311451	584	63573											
GFM1	85476	broad.mit.edu	37	chr3	158366821	158366821	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaaacaagtgtatttttAtttttcaggtctaaactaaa	6	4	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158366821	G	G	158366821	1	3	57	0	1	0	0	0	0	0	0	0	6405	464	16	5		5	GFM1	3	158366821	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1655842	158366821	39655609	585	63574											
SCHIP1	29970	broad.mit.edu	37	chr3	158842267	158842267	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtttccttagtcatgtgCtcccaagggccccattcttc	8	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158842267	T	T	158842267	1	4	57	0	1	0	0	0	0	0	0	0	14017	812	28	4		4	SCHIP1	3	158842267	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	475446	158842267	39180163	586	63575											
SMC4	10051	broad.mit.edu	37	chr3	160129835	160129835	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctattaaagtcttgtgtcGgagagttgaaatattaaatg	9	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160129835	A	A	160129835	3	1	57	1	0	0	0	0	1	0	0	0	14899	1116	39	4	833	4	SMC4	3	160129835	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1287568	160129835	37892595	587	63576											
SI	6476	broad.mit.edu	37	chr3	164766995	164766995	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttctgcacagcatccatGcaaattgttttggaatacat	7	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164766995	T	T	164766995	4	4	57	1	0	0	0	0	0	1	0	0	14410	1311	46	3	3984	3	SI	3	164766995	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4637160	164766995	33255435	588	63577											
SERPINI2	5276	broad.mit.edu	37	chr3	167182921	167182921	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttttcaagtatttgttacCtttcagctgactgctcaaat	5	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167182921	T	T	167182921	1	4	57	0	1	0	0	0	0	0	0	0	14232	696	24	4		4	SERPINI2	3	167182921	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2415926	167182921	30839509	589	63578											
WDR49	151790	broad.mit.edu	37	chr3	167245669	167245669	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaaatactgcagtctgcaGaggaggagataatcagtaac	10	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167245669	A	A	167245669	3	1	57	1	0	0	0	0	1	0	0	0	17429	942	33	4	626	4	WDR49	3	167245669	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	62748	167245669	30776761	590	63579											
WDR49	151790	broad.mit.edu	37	chr3	167254858	167254858	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattgagtagccactatccaCttgaatgatgtgatccaaga	8	9	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167254858	G	G	167254858	1	3	57	0	1	0	0	0	0	0	0	0	17429	580	20	4		4	WDR49	3	167254858	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	9189	167254858	30767572	591	63580											
LRRIQ4	344657	broad.mit.edu	37	chr3	169551049	169551049	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtacagattatcctacgGagcaactccttacacccttg	6	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169551049	T	T	169551049	1	4	57	0	1	0	0	0	0	0	0	0	9118	1189	41	3		3	LRRIQ4	3	169551049	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2296191	169551049	28471381	592	63581											
SAMD7	344658	broad.mit.edu	37	chr3	169644379	169644379	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctatttaccagcaaaggaGaatggaaaaaattaatccca	7	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169644379	T	T	169644379	3	4	57	1	0	0	0	0	1	0	0	0	13935	942	33	3	343	3	SAMD7	3	169644379	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	93330	169644379	28378051	593	63582											
SLC7A14	57709	broad.mit.edu	37	chr3	170216426	170216426	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaaggcagagtgtgtgacAggcacaccaggtgtttggaa	15	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170216426	C	C	170216426	1	2	57	0	1	0	0	0	0	0	0	0	14810	203	7	5		5	SLC7A14	3	170216426	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	572047	170216426	27806004	594	63583											
TNIK	23043	broad.mit.edu	37	chr3	170945764	170945764	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactttgcccaactgtaggCtaacgtaagtgttctgagca	10	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170945764	T	T	170945764	1	4	57	0	1	0	0	0	0	0	0	0	16436	812	28	4		4	TNIK	3	170945764	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	729338	170945764	27076666	595	63584											
TNIK	23043	broad.mit.edu	37	chr3	171131191	171131191	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcccaccccatgcctcatCaggaactcttctataaagga	5	14	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171131191	A	A	171131191	1	1	57	0	1	0	0	0	0	0	0	0	16436	841	29	3		3	TNIK	3	171131191	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	185427	171131191	26891239	596	63585											
ECT2	1894	broad.mit.edu	37	chr3	172533425	172533425	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatactgctgatccagaatCctttgaagtaaatacaaaag	6	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172533425	T	T	172533425	3	4	57	1	0	0	0	0	1	0	0	0	4941	855	30	4	2421	4	ECT2	3	172533425	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1402234	172533425	25489005	597	63586											
KCNMB2	10242	broad.mit.edu	37	chr3	178546229	178546229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctctctgcctctgaaGttcccctttgccagcatttc	7	16	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178546229	T	T	178546229	1	4	57	0	1	0	0	0	0	0	0	0	8145	1044	36	3		3	KCNMB2	3	178546229	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6012804	178546229	19476201	598	63587											
KCNMB2	10242	broad.mit.edu	37	chr3	178560424	178560424	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtatcttctagtaacagttTatcttattctccacagtgct	5	9	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178560424	A	A	178560424	1	1	57	0	1	0	0	0	0	0	0	0	8145	1769	61	5		5	KCNMB2	3	178560424	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	14195	178560424	19462006	599	63588											
KCNMB3	27094	broad.mit.edu	37	chr3	178978295	178978295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagatttctcttttcccCacattcgccacgatttcatt	4	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178978295	A	A	178978295	1	1	57	0	1	0	0	0	0	0	0	0	8146	609	21	2		2	KCNMB3	3	178978295	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	417871	178978295	19044135	600	63589											
MRPL47	57129	broad.mit.edu	37	chr3	179306652	179306652	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatggtaaatttaatagttCagacatcttagacaagactt	6	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179306652	G	G	179306652	1	3	57	0	1	0	0	0	0	0	0	0	9905	841	29	4		4	MRPL47	3	179306652	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	328357	179306652	18715778	601	63590											
YEATS2	55689	broad.mit.edu	37	chr3	183493712	183493712	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtatttttagatctccagtCtggctcagctgccagtggtg	11	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183493712	T	T	183493712	3	4	57	1	0	0	0	0	1	0	0	0	17599	913	32	4	2444	4	YEATS2	3	183493712	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4187060	183493712	14528718	602	63591											
YEATS2	55689	broad.mit.edu	37	chr3	183508600	183508600	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcagtctgaaggaatggctCccgtgtcttcatctacggtc	11	11	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183508600	T	T	183508600	3	4	57	1	0	0	0	0	1	0	0	0	17599	855	30	4	3007	4	YEATS2	3	183508600	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	14888	183508600	14513830	603	63592											
ECE2	9718	broad.mit.edu	37	chr3	184002808	184002808	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttcttgctgtcaccattgGagttgagtgactctgagcct	10	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184002808	A	A	184002808	3	1	57	1	0	0	0	0	1	0	0	0	4930	1175	41	4	2015	4	ECE2	3	184002808	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	494208	184002808	14019622	604	63593											
EIF4G1	1981	broad.mit.edu	37	chr3	184043773	184043773	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggagtgggtgattcagctCaggtttagatcttagtccct	13	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184043773	T	T	184043773	1	4	57	0	1	0	0	0	0	0	0	0	5078	841	29	4		4	EIF4G1	3	184043773	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	40965	184043773	13978657	605	63594											
EPHB3	2049	broad.mit.edu	37	chr3	184295457	184295457	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcattgcagagcgagggcatCgcctccacagtgaccagcca	12	14	0	2	rs56102565	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184295457	T	T	184295457	2	4	57	1	0	0	0	0	0	0	0	1	5218	874	31	4		4	EPHB3	3	184295457	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	251684	184295457	13726973	606	63595											
VPS8	23355	broad.mit.edu	37	chr3	184567655	184567655	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaatagattattccagccaGaaggcaggatacttaagtcc	10	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184567655	A	A	184567655	1	1	57	0	1	0	0	0	0	0	0	0	17345	957	33	4		4	VPS8	3	184567655	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	272198	184567655	13454775	607	63596											
EIF4A2	1974	broad.mit.edu	37	chr3	186505046	186505046	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccagagacttcacagtttCtgctctggtaagaggtgttc	11	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186505046	T	T	186505046	3	4	57	1	0	0	0	0	1	0	0	0	5067	913	32	4	932	4	EIF4A2	3	186505046	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1937391	186505046	11517384	608	63597											
RFC4	5984	broad.mit.edu	37	chr3	186507926	186507926	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacatgtgcaaagtacctaCttacggcaagtttttctgtg	9	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186507926	T	T	186507926	1	4	57	0	1	0	0	0	0	0	0	0	13355	580	20	4		4	RFC4	3	186507926	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2880	186507926	11514504	609	63598											
BCL6	604	broad.mit.edu	37	chr3	187446181	187446181	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagtactcagactgggtctCtcccatctcctcagggaacg	10	13	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187446181	T	T	187446181	3	4	57	1	0	0	0	0	1	0	0	0	1381	922	32	4	633	4	BCL6	3	187446181	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	938255	187446181	10576249	610	63599											
TP63	8626	broad.mit.edu	37	chr3	189526215	189526215	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccaccttcgatgctctctCtccatcacccgccatcccct	3	22	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189526215	G	G	189526215	3	3	57	1	0	0	0	0	1	0	0	0	16516	913	32	4	539	4	TP63	3	189526215	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2080034	189526215	8496215	611	63600											
LEPREL1	55214	broad.mit.edu	37	chr3	189682018	189682018	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaggaatcctgggattgaaGatgatgtaaattatctcaat	9	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189682018	A	A	189682018	1	1	57	0	1	0	0	0	0	0	0	0	8802	957	33	4		4	LEPREL1	3	189682018	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	155803	189682018	8340412	612	63601											
LEPREL1	55214	broad.mit.edu	37	chr3	189687173	189687173	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcccctttgaatgtcaccaGagtcctagcttcttagcagt	8	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189687173	T	T	189687173	1	4	57	0	1	0	0	0	0	0	0	0	8802	957	33	3		3	LEPREL1	3	189687173	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5155	189687173	8335257	613	63602											
ATP13A5	344905	broad.mit.edu	37	chr3	193036720	193036720	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aactgttcatctgttcatctCcaggactcgcacttcatggg	8	12	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193036720	G	G	193036720	1	3	57	0	1	0	0	0	0	0	0	0	1131	870	30	4		4	ATP13A5	3	193036720	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3349547	193036720	4985710	614	63603											
ATP13A3	79572	broad.mit.edu	37	chr3	194181540	194181540	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggcaagcttccagcgactCaaattgtaaccataaatctc	6	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	194181540	G	G	194181540	3	3	57	1	0	0	0	0	1	0	0	0	1129	825	29	4	3728	4	ATP13A3	3	194181540	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1144820	194181540	3840890	615	63604											
C3orf21	152002	broad.mit.edu	37	chr3	194947467	194947467	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgatctgatgcatggcgaccGagaggaagaagatggagtca	15	6	2	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194947467	A	A	194947467	3	1	57	1	0	0	0	0	1	0	0	0	2236	1059	37	4	570	4	C3orf21	3	194947467	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	765927	194947467	3074963	616	63605											
PIGX	54965	broad.mit.edu	37	chr3	196454981	196454981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgattgtggtcaataaccCagatttgttgatgttttgtg	10	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196454981	A	A	196454981	3	1	57	1	0	0	0	0	1	0	0	0	11998	594	21	2	520	2	PIGX	3	196454981	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1507514	196454981	1567449	617	63606											
ZNF595	152687	broad.mit.edu	37	chr4	68428	68428	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgtgatcagcgtggtgtTaagttcatatatctatgaag	10	5	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68428	C	C	68428	1	2	57	0	1	0	0	0	0	0	0	0	18152	1769	61	5		5	ZNF595	4	68428	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08		68428	191085848	618	63607											
GRK4	2868	broad.mit.edu	37	chr4	3011339	3011339	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaaaagaacaatgcaAtgtgagacctgaaacttgtt	7	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3011339	T	T	3011339	1	4	57	0	1	0	0	0	0	0	0	0	6857	116	4	5		5	GRK4	4	3011339	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2942911	3011339	188142937	619	63608											
CRMP1	1400	broad.mit.edu	37	chr4	5875061	5875061	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagagagggaagcacacggTgtattagtccatcctcacaa	11	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5875061	G	G	5875061	1	3	57	0	1	0	0	0	0	0	0	0	3922	1711	59	5		5	CRMP1	4	5875061	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2863722	5875061	185279215	620	63609											
SORCS2	57537	broad.mit.edu	37	chr4	7640086	7640086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcctcactcagtgaccGggaccagagcctattcctca	8	16	3	2	rs35727450		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7640086	A	A	7640086	3	1	57	1	0	0	0	0	1	0	0	0	15045	1116	39	4	694	4	SORCS2	4	7640086	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1765025	7640086	183514190	621	63610											
ACOX3	8310	broad.mit.edu	37	chr4	8368601	8368601	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaagcagcagcaatctcCggcgtgttctggaatcagaa	11	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8368601	A	A	8368601	1	1	57	0	1	0	0	0	0	0	0	0	160	667	23	1		1	ACOX3	4	8368601	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	728515	8368601	182785675	622	63611											
CPZ	8532	broad.mit.edu	37	chr4	8609199	8609199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagggagacagtgtgcgcGgtccccttggagctggtgcc	19	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8609199	T	T	8609199	1	4	57	0	1	0	0	0	0	0	0	0	3871	1131	39	1		1	CPZ	4	8609199	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	240598	8609199	182545077	623	63612											
KCNIP4	80333	broad.mit.edu	37	chr4	21485228	21485228	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagatcattctggctaataTggtgaaaccccatctctact	7	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21485228	A	A	21485228	1	1	57	0	1	0	0	0	0	0	0	0	8112	1479	51	5		5	KCNIP4	4	21485228	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	12876029	21485228	169669048	624	63613											
ARAP2	116984	broad.mit.edu	37	chr4	36152616	36152616	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtggtagacttatcattttCatagtaactcaagaagcctc	7	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36152616	T	T	36152616	3	4	57	1	0	0	0	0	1	0	0	0	841	835	29	4	2383	4	ARAP2	4	36152616	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	14667388	36152616	155001660	625	63614											
RFC1	5981	broad.mit.edu	37	chr4	39350691	39350692	+	Intron	INS	-	G	G													cacaggttcacagcaaaagaINSaaattttccctcaggatgat					rs72604322	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39350692	G	G	39350691	6	5	57	0	1	1	1	0	0	0	0	0	13352	261	9	0		0	RFC1	4	39350691	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	3198075	39350691	151803585	626	63615											
PDS5A	23244	broad.mit.edu	37	chr4	39918815	39918815	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttgattgaaaaactgtaaGagatattaaaaacaaaaaga	6	3	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39918815	C	C	39918815	1	2	57	0	1	0	0	0	0	0	0	0	11785	957	33	4		4	PDS5A	4	39918815	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	568124	39918815	151235461	627	63616											
N4BP2	55728	broad.mit.edu	37	chr4	40144544	40144544	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactaaatactcttgaagcaGataagacacccatattgtga	6	8	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40144544	T	T	40144544	1	4	57	0	1	0	0	0	0	0	0	0	10204	957	33	3		3	N4BP2	4	40144544	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	225729	40144544	151009732	628	63617											
ATP8A1	10396	broad.mit.edu	37	chr4	42592799	42592799	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtgaggacccacatacaCgcatcctatacgactcagtg	9	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42592799	T	T	42592799	1	4	57	0	1	0	0	0	0	0	0	0	1196	551	19	4		4	ATP8A1	4	42592799	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2448255	42592799	148561477	629	63618											
GRXCR1	389207	broad.mit.edu	37	chr4	42895126	42895126	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attattaatagcagagacacActgtaagtccttgggaatct	8	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42895126	C	C	42895126	1	2	57	0	1	0	0	0	0	0	0	0	6878	174	6	5		5	GRXCR1	4	42895126	5'Flank	SNP	A	TCGA-17-Z026-01A-01W-0746-08	302327	42895126	148259150	630	63619											
GABRG1	2565	broad.mit.edu	37	chr4	46099428	46099428	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatcatgtataaaagtaTagtttaagtatgttacaatt	5	3	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46099428	C	C	46099428	1	2	57	0	1	0	0	0	0	0	0	0	6231	1421	49	5		5	GABRG1	4	46099428	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3204302	46099428	145054848	631	63620											
GABRB1	2560	broad.mit.edu	37	chr4	47405466	47405466	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctaagaaggtggagttcAcaacaggtgaggttgtttcc	13	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47405466	T	T	47405466	3	4	57	1	0	0	0	0	1	0	0	0	6226	159	6	5	698	5	GABRB1	4	47405466	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1306038	47405466	143748810	632	63621											
GABRB1	2560	broad.mit.edu	37	chr4	47408703	47408703	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctttctctttcacaggaatCacgacagtgcttacaatgac	6	11	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47408703	A	A	47408703	2	1	57	1	0	0	0	0	0	0	0	1	6226	816	29	3		3	GABRB1	4	47408703	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3237	47408703	143745573	633	63622											
TXK	7294	broad.mit.edu	37	chr4	48115327	48115327	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatctgtgttctcatttgtCtgacattgaaaagcaatcat	6	7	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48115327	G	G	48115327	5	3	57	1	0	0	0	0	0	0	1	0	16912	927	32	4	1564	4	TXK	4	48115327	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	706624	48115327	143038949	634	63623											
CWH43	80157	broad.mit.edu	37	chr4	48994052	48994052	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctggagttatcagatgtcCaacaaagtgatactgacatt	8	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48994052	T	T	48994052	2	4	57	1	0	0	0	0	0	0	0	1	4106	581	21	4		4	CWH43	4	48994052	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	878725	48994052	142160224	635	63624											
SPATA18	132671	broad.mit.edu	37	chr4	52917722	52917722	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacccggccaggtccgacccGagggggaggatggaaacacc	15	13	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52917722	C	C	52917722	1	2	57	0	1	0	0	0	0	0	0	0	15119	1073	37	4		4	SPATA18	4	52917722	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3923670	52917722	138236554	636	63625											
SPATA18	132671	broad.mit.edu	37	chr4	52944959	52944959	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagatccatgtgagaaaatCgttgacaccatcttatgtgg	9	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52944959	A	A	52944959	4	1	57	1	0	0	0	0	0	1	0	0	15119	893	31	3	1109	3	SPATA18	4	52944959	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	27237	52944959	138209317	637	63626											
PDGFRA	5156	broad.mit.edu	37	chr4	54879918	54879918	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagctcctgacacctttgctGattaataatcatggaaagaa	7	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54879918	A	A	54879918	1	1	57	0	1	0	0	0	0	0	0	0	11755	1305	45	4		4	PDGFRA	4	54879918	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1934959	54879918	136274358	638	63627											
NMU	10874	broad.mit.edu	37	chr4	56471449	56471449	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtattacatacgtccactCtgaatctcttcattcttctc	3	12	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56471449	G	G	56471449	3	3	57	1	0	0	0	0	1	0	0	0	10600	913	32	4	108	4	NMU	4	56471449	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1591531	56471449	134682827	639	63628											
KIAA1211	57482	broad.mit.edu	37	chr4	57139534	57139534	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctccctccctccctcgtttCttccttccctccctcctttc	1	24	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57139534	T	T	57139534	1	4	57	0	1	0	0	0	0	0	0	0	8285	928	32	4		4	KIAA1211	4	57139534	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	668085	57139534	134014742	640	63629											
AASDH	132949	broad.mit.edu	37	chr4	57237744	57237744	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagaaatatttccacaacaGaaggatcgaaggtcagaggt	10	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57237744	C	C	57237744	3	2	57	1	0	0	0	0	1	0	0	0	22	942	33	4	2606	4	AASDH	4	57237744	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	98210	57237744	133916532	641	63630											
LPHN3	23284	broad.mit.edu	37	chr4	62722054	62722054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccttcctttctccctctcTccctccctcccttcttcttt	0	22	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62722054	A	A	62722054	1	1	57	0	1	0	0	0	0	0	0	0	9004	1566	54	5		5	LPHN3	4	62722054	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	5484310	62722054	128432222	642	63631											
LPHN3	23284	broad.mit.edu	37	chr4	62758162	62758162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcttgtgtttggcagtGgtcagatggttgttttgata	13	3	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62758162	T	T	62758162	1	4	57	0	1	0	0	0	0	0	0	0	9004	1363	47	2		2	LPHN3	4	62758162	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	36108	62758162	128396114	643	63632											
UBA6	55236	broad.mit.edu	37	chr4	68501192	68501192	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgactattgtaagactcagtCaaatgcggtacaataacttc	7	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68501192	G	G	68501192	3	3	57	1	0	0	0	0	1	0	0	0	16958	825	29	4	1393	4	UBA6	4	68501192	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5743030	68501192	122653084	644	63633											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68964804	68964804	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataaaaattcattatagttCaactttatgtttacttacta	2	5	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68964804	T	T	68964804	1	4	57	0	1	0	0	0	0	0	0	0	16366	841	29	4		4	TMPRSS11F	4	68964804	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	463612	68964804	122189472	645	63634											
UGT2B10	7365	broad.mit.edu	37	chr4	69874926	69874926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacttttcagacttcagaGgaaaaaacaggtacttgtgt	8	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69874926	T	T	69874926	1	4	57	0	1	0	0	0	0	0	0	0	17082	1015	35	2		2	UGT2B10	4	69874926	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	910122	69874926	121279350	646	63635											
UGT2B11	10720	broad.mit.edu	37	chr4	70070021	70070021	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gataaaaacaaagcagatttCagattggttatatcatttaa	6	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70070021	A	A	70070021	1	1	57	0	1	0	0	0	0	0	0	0	17083	841	29	3		3	UGT2B11	4	70070021	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	195095	70070021	121084255	647	63636											
UGT2A1	10941	broad.mit.edu	37	chr4	70460323	70460323	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggctgatcagcaaacatGggaactcccaccatagggac	10	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70460323	T	T	70460323	2	4	57	1	0	0	0	0	0	0	0	1	17079	1335	47	2		2	UGT2A1	4	70460323	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	390302	70460323	120693953	648	63637											
UGT2A1	10941	broad.mit.edu	37	chr4	70503719	70503719	+	Intron	SNP	A	C	C													caagaaggaaggcaggcaggAaggaaggaaggaaggaagga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70503719	C	C	70503719	1	2	57	0	1	0	0	0	0	0	0	0	17079	261	9	5		5	UGT2A1	4	70503719	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	43396	70503719	120650557	649	63638	292	2									
UGT2A1	10941	broad.mit.edu	37	chr4	70503723	70503723	+	Intron	SNP	A	C	C													aaggaaggcaggcaggaaggAaggaaggaaggaaggaaaga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70503723	C	C	70503723	1	2	57	0	1	0	0	0	0	0	0	0	17079	261	9	5		5	UGT2A1	4	70503723	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	4	70503723	120650553	650	63639	292	2									
PROL1	58503	broad.mit.edu	37	chr4	71275486	71275486	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccccaaataaacatcacCaccgcagatacaacaatcac	4	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71275486	G	G	71275486	2	3	57	1	0	0	0	0	0	0	0	1	12660	581	21	4		4	PROL1	4	71275486	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	771763	71275486	119878790	651	63640											
AMBN	258	broad.mit.edu	37	chr4	71469745	71469745	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtagccaaatgagcatggGactcagatttttccactcca	8	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71469745	A	A	71469745	1	1	57	0	1	0	0	0	0	0	0	0	563	1189	41	4		4	AMBN	4	71469745	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	194259	71469745	119684531	652	63641											
MOBKL1A	92597	broad.mit.edu	37	chr4	71785928	71785928	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatatttgatttaagctcctCttcctcttcctcctcctcct	2	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71785928	G	G	71785928	1	3	57	0	1	0	0	0	0	0	0	0	9776	928	32	4		4	MOBKL1A	4	71785928	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	316183	71785928	119368348	653	63642											
SLC4A4	8671	broad.mit.edu	37	chr4	72306384	72306384	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgcagaagcttccaacGtgcttgttggggaggttgac	15	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72306384	A	A	72306384	3	1	57	1	0	0	0	0	1	0	0	0	14770	1145	40	4	1006	4	SLC4A4	4	72306384	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	520456	72306384	118847892	654	63643											
ADAMTS3	9508	broad.mit.edu	37	chr4	73171796	73171796	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaggtaccctttgcatgtgTagtaaatattgtaggaagca	10	5	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73171796	C	C	73171796	1	2	57	0	1	0	0	0	0	0	0	0	267	1653	57	5		5	ADAMTS3	4	73171796	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	865412	73171796	117982480	655	63644											
ANKRD17	26057	broad.mit.edu	37	chr4	73979564	73979564	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtttttgtttgcttcagcaGcctgtctatctttggcttgt	9	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73979564	A	A	73979564	3	1	57	1	0	0	0	0	1	0	0	0	646	971	34	4	3509	4	ANKRD17	4	73979564	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	807768	73979564	117174712	656	63645											
AFP	174	broad.mit.edu	37	chr4	74315756	74315756	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taattcttcattttcaggaaGaagaattacagaaatacatc	5	6	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74315756	A	A	74315756	3	1	57	1	0	0	0	0	1	0	0	0	363	943	33	4	1233	4	AFP	4	74315756	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	336192	74315756	116838520	657	63646											
AFM	173	broad.mit.edu	37	chr4	74354299	74354299	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaaattactcccacttgttCtacttgctgttcaaattatt	4	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74354299	G	G	74354299	1	3	57	0	1	0	0	0	0	0	0	0	361	928	32	4		4	AFM	4	74354299	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	38543	74354299	116799977	658	63647											
PPBP	5473	broad.mit.edu	37	chr4	74853130	74853130	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatctgtgggtgtcctgatCtgaatatcagaactaatcca	8	8	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74853130	A	A	74853130	1	1	57	0	1	0	0	0	0	0	0	0	12399	928	32	3		3	PPBP	4	74853130	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	498831	74853130	116301146	659	63648											
C4orf26	152816	broad.mit.edu	37	chr4	76489314	76489314	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcctgacttgcgttttcCtctccacaggacaagaagag	9	11	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76489314	T	T	76489314	1	4	57	0	1	0	0	0	0	0	0	0	2280	696	24	4		4	C4orf26	4	76489314	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1636184	76489314	114664962	660	63649											
PPEF2	5470	broad.mit.edu	37	chr4	76812711	76812711	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctggctgtcaccagattCacggtttcactccctgtgca	8	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76812711	T	T	76812711	1	4	57	0	1	0	0	0	0	0	0	0	12404	841	29	4		4	PPEF2	4	76812711	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	323397	76812711	114341565	661	63650											
FRAS1	80144	broad.mit.edu	37	chr4	79102798	79102798	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcttttcgaatcttcgttCacaaggtggttgcctttctg	10	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79102798	T	T	79102798	1	4	57	0	1	0	0	0	0	0	0	0	6102	841	29	4		4	FRAS1	4	79102798	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2290087	79102798	112051478	662	63651											
FRAS1	80144	broad.mit.edu	37	chr4	79238462	79238462	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcccgtgaagcccagccagGaagtgggcactttattcacc	12	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79238462	T	T	79238462	1	4	57	0	1	0	0	0	0	0	0	0	6102	1189	41	3		3	FRAS1	4	79238462	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	135664	79238462	111915814	663	63652											
BMP2K	55589	broad.mit.edu	37	chr4	79832345	79832345	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaatgaaaagaacctccctCaacacaggtttcctgctgca	7	12	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79832345	T	T	79832345	4	4	57	1	0	0	0	0	0	1	0	0	1466	827	29	4	2744	4	BMP2K	4	79832345	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	593883	79832345	111321931	664	63653											
C4orf22	255119	broad.mit.edu	37	chr4	81844489	81844489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttccatttttccttccaCtgcatcctttcacttttgcc	2	15	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81844489	A	A	81844489	1	1	57	0	1	0	0	0	0	0	0	0	2278	580	20	3		3	C4orf22	4	81844489	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2012144	81844489	109309787	665	63654											
C4orf22	255119	broad.mit.edu	37	chr4	81849264	81849264	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagaaggaagcgtctctcCcccagcgttctgttctgttt	10	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81849264	T	T	81849264	1	4	57	0	1	0	0	0	0	0	0	0	2278	638	22	4		4	C4orf22	4	81849264	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4775	81849264	109305012	666	63655											
WDFY3	23001	broad.mit.edu	37	chr4	85623505	85623505	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgccatagctctacgtaCctagatcaaagttgttggaa	9	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85623505	A	A	85623505	5	1	57	1	0	0	0	0	0	0	1	0	17397	521	18	3	2035	3	WDFY3	4	85623505	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3774241	85623505	105530771	667	63656											
ARHGAP24	83478	broad.mit.edu	37	chr4	86893183	86893183	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atatcttcacacttctgtctCcacagcaacacagatgtaca	4	13	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86893183	G	G	86893183	1	3	57	0	1	0	0	0	0	0	0	0	875	870	30	4		4	ARHGAP24	4	86893183	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1269678	86893183	104261093	668	63657											
PTPN13	5783	broad.mit.edu	37	chr4	87656020	87656020	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggctgagtatggagattatCaaccagaggtaggatttgtg	14	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87656020	T	T	87656020	4	4	57	1	0	0	0	0	0	1	0	0	12888	827	29	4	2193	4	PTPN13	4	87656020	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	762837	87656020	103498256	669	63658											
PTPN13	5783	broad.mit.edu	37	chr4	87706464	87706464	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctgctggatgttgtggatGaggaagcccagaatctttta	12	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87706464	A	A	87706464	3	1	57	1	0	0	0	0	1	0	0	0	12888	1291	45	4	6364	4	PTPN13	4	87706464	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	50444	87706464	103447812	670	63659											
AFF1	4299	broad.mit.edu	37	chr4	87968821	87968821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtccggaggatgtggGgcaaggtggggaggttagtc	19	4	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87968821	T	T	87968821	1	4	57	0	1	0	0	0	0	0	0	0	356	1247	43	2		2	AFF1	4	87968821	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	262357	87968821	103185455	671	63660											
PKD2	5311	broad.mit.edu	37	chr4	88959369	88959369	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagacagcggctgagcttGgaactttttcagagatgttt	12	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88959369	T	T	88959369	1	4	57	0	1	0	0	0	0	0	0	0	12061	1363	47	2		2	PKD2	4	88959369	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	990548	88959369	102194907	672	63661											
FAM13A	10144	broad.mit.edu	37	chr4	89658589	89658589	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggagggagggaactggtgcgGatttagcaatgggttagcag	19	4	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89658589	C	C	89658589	1	2	57	0	1	0	0	0	0	0	0	0	5498	1189	41	4		4	FAM13A	4	89658589	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	699220	89658589	101495687	673	63662											
GRID2	2895	broad.mit.edu	37	chr4	94516393	94516393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaattccttagcatttaGttgtggcctctcttatgaca	7	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94516393	T	T	94516393	1	4	57	0	1	0	0	0	0	0	0	0	6838	1044	36	3		3	GRID2	4	94516393	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4857804	94516393	96637883	674	63663											
UNC5C	8633	broad.mit.edu	37	chr4	96222724	96222724	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttatgtgtatcaacttctGagacccaaggtgcttattgt	8	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96222724	T	T	96222724	1	4	57	0	1	0	0	0	0	0	0	0	17119	1305	45	3		3	UNC5C	4	96222724	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1706331	96222724	94931552	675	63664											
UNC5C	8633	broad.mit.edu	37	chr4	96222905	96222905	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccggacaatgagacctgaCaagagaaaaagaaagattta	9	7	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96222905	G	G	96222905	1	3	57	0	1	0	0	0	0	0	0	0	17119	493	17	4		4	UNC5C	4	96222905	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	181	96222905	94931371	676	63665											
EGF	1950	broad.mit.edu	37	chr4	110920853	110920853	+	Silent	SNP	C	T	T													agctgtgttgttggctacatCggggagcgatgtcagtaccg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110920853	T	T	110920853	2	4	57	1	0	0	0	0	0	0	0	1	5002	874	31	4		4	EGF	4	110920853	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	14697948	110920853	80233423	677	63666	293	2									
EGF	1950	broad.mit.edu	37	chr4	110920855	110920855	+	Missense_Mutation	SNP	G	T	T													ctgtgttgttggctacatcgGggagcgatgtcagtaccgag							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110920855	T	T	110920855	3	4	57	1	0	0	0	0	1	0	0	0	5002	1232	43	2	3108	2	EGF	4	110920855	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2	110920855	80233421	678	63667	293	2									
ALPK1	80216	broad.mit.edu	37	chr4	113352085	113352085	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatccttgacacctattcacAgcaccatacttcggtgtgtg	7	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113352085	T	T	113352085	3	4	57	1	0	0	0	0	1	0	0	0	544	188	7	5	1416	5	ALPK1	4	113352085	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2431230	113352085	77802191	679	63668											
ALPK1	80216	broad.mit.edu	37	chr4	113360962	113360962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacaaagccacagaatatGgcttggcctatggccatttt	8	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113360962	T	T	113360962	3	4	57	1	0	0	0	0	1	0	0	0	544	1348	47	2	3518	2	ALPK1	4	113360962	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	8877	113360962	77793314	680	63669											
C4orf21	55345	broad.mit.edu	37	chr4	113506687	113506687	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatggtagggggaggggaaGcaagaataccttatttggac	16	4	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113506687	A	A	113506687	1	1	57	0	1	0	0	0	0	0	0	0	2277	986	34	4		4	C4orf21	4	113506687	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	145725	113506687	77647589	681	63670											
ANK2	287	broad.mit.edu	37	chr4	114282105	114282105	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctgacatagatgcatcaGtcaggtgtcattcacagcat	8	10	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114282105	A	A	114282105	1	1	57	0	1	0	0	0	0	0	0	0	621	1044	36	4		4	ANK2	4	114282105	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	775418	114282105	76872171	682	63671											
NDST4	64579	broad.mit.edu	37	chr4	115769501	115769502	+	Intron	INS	-	A	A													agtgcagttgttcctgttacINSaaaaaaagaaagtaaaaggt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115769502	A	A	115769501	6	5	57	0	1	1	1	0	0	0	0	0	10353	493	17	0		0	NDST4	4	115769501	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	1487396	115769501	75384775	683	63672											
NDST3	9348	broad.mit.edu	37	chr4	119059421	119059421	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctccagtatgcatagggTacaactaattctgcaagatt	7	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119059421	A	A	119059421	1	1	57	0	1	0	0	0	0	0	0	0	10352	1653	57	5		5	NDST3	4	119059421	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3289920	119059421	72094855	684	63673											
QRFPR	84109	broad.mit.edu	37	chr4	122291593	122291593	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgacagatggatgttaatGaggaacatggtccagctgct	13	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122291593	A	A	122291593	1	1	57	0	1	0	0	0	0	0	0	0	12986	1305	45	4		4	QRFPR	4	122291593	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3232172	122291593	68862683	685	63674											
CCNA2	890	broad.mit.edu	37	chr4	122741833	122741833	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatattcttctcctacttCaactaaccagtccacgagga	4	12	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122741833	T	T	122741833	3	4	57	1	0	0	0	0	1	0	0	0	2940	835	29	4	660	4	CCNA2	4	122741833	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	450240	122741833	68412443	686	63675											
KIAA1109	84162	broad.mit.edu	37	chr4	123192444	123192444	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagatgacatcaaagcaactCagactgatattaaacttagc	6	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123192444	T	T	123192444	4	4	57	1	0	0	0	0	0	1	0	0	8278	827	29	4	7943	4	KIAA1109	4	123192444	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	450611	123192444	67961832	687	63676											
IL2	3558	broad.mit.edu	37	chr4	123374908	123374908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatattgctgattaagtccCtgggtcttaagtgaaagttt	10	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123374908	A	A	123374908	3	1	57	1	0	0	0	0	1	0	0	0	7736	681	24	2	161	2	IL2	4	123374908	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	182464	123374908	67779368	688	63677											
C4orf33	132321	broad.mit.edu	37	chr4	130030648	130030648	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagaacttcctttatcgttCagaatgtccagaggagagac	9	9	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130030648	G	G	130030648	3	3	57	1	0	0	0	0	1	0	0	0	2286	825	29	4	329	4	C4orf33	4	130030648	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6655740	130030648	61123628	689	63678											
PCDH10	57575	broad.mit.edu	37	chr4	134073414	134073414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgccccagtcgctctggcGgcggggaaacctcgctagac	14	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134073414	T	T	134073414	3	4	57	1	0	0	0	0	1	0	0	0	11601	1116	39	1	2121	1	PCDH10	4	134073414	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4042766	134073414	57080862	690	63679											
OTUD4	54726	broad.mit.edu	37	chr4	146077054	146077054	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatgctttcttatattaaaGaactacatttaaaaccactt	2	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146077054	A	A	146077054	1	1	57	0	1	0	0	0	0	0	0	0	11408	957	33	4		4	OTUD4	4	146077054	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	12003640	146077054	45077222	691	63680											
TTC29	83894	broad.mit.edu	37	chr4	147737770	147737770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaggagggagcaagatgGgtaagggaggcagggagaag	22	3	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147737770	T	T	147737770	1	4	57	0	1	0	0	0	0	0	0	0	16822	1247	43	2		2	TTC29	4	147737770	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1660716	147737770	43416506	692	63681											
TMEM184C	55751	broad.mit.edu	37	chr4	148555046	148555046	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttgccatgtgggatgtctCagatattagagatgatattt	10	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148555046	T	T	148555046	3	4	57	1	0	0	0	0	1	0	0	0	16229	838	29	4	1044	4	TMEM184C	4	148555046	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	817276	148555046	42599230	693	63682											
DCLK2	166614	broad.mit.edu	37	chr4	151153391	151153391	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaatgctttctttggcatCagatccacaggctgtgtttg	10	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151153391	T	T	151153391	1	4	57	0	1	0	0	0	0	0	0	0	4325	841	29	4		4	DCLK2	4	151153391	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2598345	151153391	40000885	694	63683											
LRBA	987	broad.mit.edu	37	chr4	151412264	151412264	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctttccccaattaaaataGaaaagaccctattaagaaaa	3	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151412264	C	C	151412264	1	2	57	0	1	0	0	0	0	0	0	0	9018	957	33	4		4	LRBA	4	151412264	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	258873	151412264	39742012	695	63684											
LRBA	987	broad.mit.edu	37	chr4	151729384	151729384	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaagaaatgaaatgaaatGaaatgaaacgaagtaaaata	8	1	0	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151729384	A	A	151729384	1	1	57	0	1	0	0	0	0	0	0	0	9018	1305	45	4		4	LRBA	4	151729384	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	317120	151729384	39424892	696	63685											
LRBA	987	broad.mit.edu	37	chr4	151829938	151829938	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaatggcactagagagtttCccatcgtacaataaaagttt	8	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151829938	T	T	151829938	2	4	57	1	0	0	0	0	0	0	0	1	9018	842	30	4		4	LRBA	4	151829938	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	100554	151829938	39324338	697	63686											
PET112L	5188	broad.mit.edu	37	chr4	152682230	152682230	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcattaaaaacgccatagGctcggaccggaagactacta	9	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152682230	T	T	152682230	1	4	57	0	1	0	0	0	0	0	0	0	11828	1218	42	3		3	PET112L	4	152682230	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	852292	152682230	38472046	698	63687											
DCHS2	54798	broad.mit.edu	37	chr4	155250833	155250833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggtgcccccggtgctcacGatccagtgccacccaattga	10	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155250833	T	T	155250833	3	4	57	1	0	0	0	0	1	0	0	0	4321	1058	37	3	6511	3	DCHS2	4	155250833	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2568603	155250833	35903443	699	63688											
GRIA2	2891	broad.mit.edu	37	chr4	158257004	158257004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacacgaaaatttggaatgGgatggttggagaacttgtat	13	3	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158257004	T	T	158257004	3	4	57	1	0	0	0	0	1	0	0	0	6834	1232	43	2	1486	2	GRIA2	4	158257004	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3006171	158257004	32897272	700	63689											
GRIA2	2891	broad.mit.edu	37	chr4	158284002	158284002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctggagtattctacatcCttgtcgggggccttggtttg	13	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158284002	A	A	158284002	3	1	57	1	0	0	0	0	1	0	0	0	6834	681	24	2	2635	2	GRIA2	4	158284002	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	26998	158284002	32870274	701	63690											
TMEM144	55314	broad.mit.edu	37	chr4	159162565	159162565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaacattgattagaatgcAtttatatgtgcactttgata	6	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159162565	G	G	159162565	1	3	57	0	1	0	0	0	0	0	0	0	16181	232	8	5		5	TMEM144	4	159162565	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	878563	159162565	31991711	702	63691											
MARCH1	55016	broad.mit.edu	37	chr4	164854128	164854128	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagcttaccaaaaggcatttGatataagcaagaaagagata	9	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164854128	C	C	164854128	1	2	57	0	1	0	0	0	0	0	0	0	9390	1305	45	4		4	MARCH1	4	164854128	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5691563	164854128	26300148	703	63692											
TLL1	7092	broad.mit.edu	37	chr4	166964634	166964634	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacgacaatggcatttaagaGaatcctcattaaatcagcaa	6	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166964634	A	A	166964634	1	1	57	0	1	0	0	0	0	0	0	0	16068	957	33	4		4	TLL1	4	166964634	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2110506	166964634	24189642	704	63693											
SPOCK3	50859	broad.mit.edu	37	chr4	167656000	167656000	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttgttattggggaagaaGataattttaaataggctatc	9	2	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167656000	A	A	167656000	1	1	57	0	1	0	0	0	0	0	0	0	15199	957	33	4		4	SPOCK3	4	167656000	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	691366	167656000	23498276	705	63694											
SPOCK3	50859	broad.mit.edu	37	chr4	167658772	167658772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctgttgaaacaacacaCaggcatacaaacacacacat	5	12	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167658772	A	A	167658772	1	1	57	0	1	0	0	0	0	0	0	0	15199	493	17	3		3	SPOCK3	4	167658772	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2772	167658772	23495504	706	63695											
DDX60	55601	broad.mit.edu	37	chr4	169158901	169158901	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaacatgtccatgactcTgggttgcttgaaggacagca	10	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169158901	A	A	169158901	4	1	57	1	0	0	0	0	0	1	0	0	4411	1588	55	5	960	5	DDX60	4	169158901	Nonsense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1500129	169158901	21995375	707	63696											
DDX60L	91351	broad.mit.edu	37	chr4	169294701	169294701	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctcttagacaatgatgctCatcagtggacatttttcagt	7	8	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169294701	A	A	169294701	1	1	57	0	1	0	0	0	0	0	0	0	4412	841	29	3		3	DDX60L	4	169294701	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	135800	169294701	21859575	708	63697											
DDX60L	91351	broad.mit.edu	37	chr4	169343132	169343132	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacacagacagtatccttTgtaccttctgtctcctgtgc	6	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169343132	C	C	169343132	1	2	57	0	1	0	0	0	0	0	0	0	4412	1827	63	5		5	DDX60L	4	169343132	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	48431	169343132	21811144	709	63698											
GPM6A	2823	broad.mit.edu	37	chr4	176561960	176561960	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacagtacaaattttcttttCctctccaattgtcacaattc	3	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176561960	A	A	176561960	4	1	57	1	0	0	0	0	0	1	0	0	6680	864	30	3	286	3	GPM6A	4	176561960	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7218828	176561960	14592316	710	63699											
NEIL3	55247	broad.mit.edu	37	chr4	178274590	178274590	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcatttggaactacaactCttgtcttgactgattttagc	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178274590	G	G	178274590	3	3	57	1	0	0	0	0	1	0	0	0	10415	913	32	4	1198	4	NEIL3	4	178274590	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1712630	178274590	12879686	711	63700											
ODZ3	55714	broad.mit.edu	37	chr4	183652319	183652319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctcacaggcagtacttGtaaatacaagatcttcagat	6	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183652319	T	T	183652319	1	4	57	0	1	0	0	0	0	0	0	0	10931	1392	48	3		3	ODZ3	4	183652319	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5377729	183652319	7501957	712	63701											
C4orf41	60684	broad.mit.edu	37	chr4	184605449	184605449	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acatacataaatctttttttCctttatagtggttcagatgg	6	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184605449	A	A	184605449	1	1	57	0	1	0	0	0	0	0	0	0	2293	870	30	3		3	C4orf41	4	184605449	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	953130	184605449	6548827	713	63702											
CYP4V2	285440	broad.mit.edu	37	chr4	187118621	187118621	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtctttagtgtctgccgctGcaaaataaacacgagataac	8	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187118621	C	C	187118621	1	2	57	0	1	0	0	0	0	0	0	0	4225	1334	46	4		4	CYP4V2	4	187118621	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2513172	187118621	4035655	714	63703											
F11	2160	broad.mit.edu	37	chr4	187197021	187197021	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaagtggtgtctggattttCactgaaatcctgtgcacttt	9	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187197021	T	T	187197021	3	4	57	1	0	0	0	0	1	0	0	0	5380	838	29	4	584	4	F11	4	187197021	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	78400	187197021	3957255	715	63704											
F11	2160	broad.mit.edu	37	chr4	187201547	187201547	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacgaagggaagtaagccAtatgaagggttatgcagaca	13	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187201547	G	G	187201547	1	3	57	0	1	0	0	0	0	0	0	0	5380	232	8	5		5	F11	4	187201547	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	4526	187201547	3952729	716	63705											
TRIML1	339976	broad.mit.edu	37	chr4	189068317	189068317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctttgaaaggtcagcacGtcagagagcctgtgtgtaag	12	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189068317	T	T	189068317	3	4	57	1	0	0	0	0	1	0	0	0	16675	1145	40	3	1220	3	TRIML1	4	189068317	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1866770	189068317	2085959	717	63706											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903695	190903695	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctcatactcctcctccctCggccgtggcatcctgatatt	6	17	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190903695	G	G	190903695	3	3	57	1	0	0	0	0	1	0	0	0	16885	893	31	4	19	4	TUBB4Q	4	190903695	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1835378	190903695	250581	718	63707											
ADAMTS16	170690	broad.mit.edu	37	chr5	5182436	5182436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtatgtaagggcgaatcTttgtgtgtatttagtgatgc	12	3	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5182436	A	A	5182436	1	1	57	0	1	0	0	0	0	0	0	0	261	1624	56	5		5	ADAMTS16	5	5182436	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08		5182436	175732824	719	63708											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239824	5239824	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catggtcaccattccttctgGagcccggagtatccgcatct	9	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5239824	C	C	5239824	3	2	57	1	0	0	0	0	1	0	0	0	261	1174	41	4	2371	4	ADAMTS16	5	5239824	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	57388	5239824	175675436	720	63709											
PAPD7	11044	broad.mit.edu	37	chr5	6737823	6737823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgatgatgatgtgtcGgctagatccacacagacctt	10	11	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6737823	T	T	6737823	1	4	57	0	1	0	0	0	0	0	0	0	11520	1131	39	1		1	PAPD7	5	6737823	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1497999	6737823	174177437	721	63710											
ADCY2	108	broad.mit.edu	37	chr5	7691158	7691158	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgagaaaataggatgctgTttgctgtgttggattgagtt	14	2	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7691158	C	C	7691158	1	2	57	0	1	0	0	0	0	0	0	0	294	1740	60	5		5	ADCY2	5	7691158	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	953335	7691158	173224102	722	63711											
ADCY2	108	broad.mit.edu	37	chr5	7724674	7724674	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaggcaatggctcaagtctGaagacattcagagaatctca	9	10	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7724674	A	A	7724674	3	1	57	1	0	0	0	0	1	0	0	0	294	1291	45	4	1770	4	ADCY2	5	7724674	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	33516	7724674	173190586	723	63712											
ADCY2	108	broad.mit.edu	37	chr5	7766939	7766939	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtaagaacattgcaattatGactgctttggtggctctcct	10	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7766939	T	T	7766939	1	4	57	0	1	0	0	0	0	0	0	0	294	1305	45	3		3	ADCY2	5	7766939	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	42265	7766939	173148321	724	63713											
MTRR	4552	broad.mit.edu	37	chr5	7889566	7889566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttatatcttgtcttcagGgtgctgtgacatctgtgtgc	10	8	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7889566	T	T	7889566	1	4	57	0	1	0	0	0	0	0	0	0	10055	1247	43	2		2	MTRR	5	7889566	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	122627	7889566	173025694	725	63714											
CTNND2	1501	broad.mit.edu	37	chr5	11082866	11082866	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcgcagtggccaccgcGcacaccacacggtcattgtc	11	17	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11082866	T	T	11082866	4	4	57	1	0	0	0	0	0	1	0	0	4054	1079	38	3	975	3	CTNND2	5	11082866	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3193300	11082866	169832394	726	63715											
CTNND2	1501	broad.mit.edu	37	chr5	11346432	11346432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaataaattacagtaccaGgttacaaaacctctttagac	5	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11346432	T	T	11346432	1	4	57	0	1	0	0	0	0	0	0	0	4054	1015	35	2		2	CTNND2	5	11346432	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	263566	11346432	169568828	727	63716											
DNAH5	1767	broad.mit.edu	37	chr5	13692089	13692089	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtggggacactccccaCatgttacttgacatcacaca	9	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13692089	A	A	13692089	1	1	57	0	1	0	0	0	0	0	0	0	4644	493	17	3		3	DNAH5	5	13692089	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2345657	13692089	167223171	728	63717											
DNAH5	1767	broad.mit.edu	37	chr5	13864751	13864751	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaagctttcgacatctgtGaagggacaccaacatgaaag	12	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13864751	T	T	13864751	1	4	57	0	1	0	0	0	0	0	0	0	4644	1305	45	3		3	DNAH5	5	13864751	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	172662	13864751	167050509	729	63718											
TRIO	7204	broad.mit.edu	37	chr5	14293248	14293248	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccatgaactgtatggtaaGacactcggaacagctggacc	11	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14293248	C	C	14293248	1	2	57	0	1	0	0	0	0	0	0	0	16677	957	33	4		4	TRIO	5	14293248	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	428497	14293248	166622012	730	63719											
TRIO	7204	broad.mit.edu	37	chr5	14390525	14390525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctcatatccatgcttgCggagaaatagactttacctc	7	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14390525	A	A	14390525	1	1	57	0	1	0	0	0	0	0	0	0	16677	783	27	3		3	TRIO	5	14390525	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	97277	14390525	166524735	731	63720											
FBXL7	23194	broad.mit.edu	37	chr5	15517929	15517929	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttacctgatttgtgaatTtgggagaaaaaaattgacat	8	4	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15517929	G	G	15517929	1	3	57	0	1	0	0	0	0	0	0	0	5781	1856	64	5		5	FBXL7	5	15517929	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1127404	15517929	165397331	732	63721											
FBXL7	23194	broad.mit.edu	37	chr5	15937335	15937335	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgttgtattcacacaaacctGaacaaagcaaatttttttaa	4	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15937335	C	C	15937335	1	2	57	0	1	0	0	0	0	0	0	0	5781	1305	45	4		4	FBXL7	5	15937335	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	419406	15937335	164977925	733	63722											
FAM134B	54463	broad.mit.edu	37	chr5	16478933	16478933	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgtctcatttcatgcataGaatctaaaatataaacttta	3	6	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16478933	C	C	16478933	1	2	57	0	1	0	0	0	0	0	0	0	5492	957	33	4		4	FAM134B	5	16478933	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	541598	16478933	164436327	734	63723											
MYO10	4651	broad.mit.edu	37	chr5	16711277	16711277	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggaccgcatacccagctttGcggattctcacagtctccag	9	15	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16711277	C	C	16711277	2	2	57	1	0	0	0	0	0	0	0	1	10156	1306	46	4		4	MYO10	5	16711277	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	232344	16711277	164203983	735	63724											
CDH12	1010	broad.mit.edu	37	chr5	21752318	21752318	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtcttttttcttctgccttCgcagtgctacatacagtaca	6	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21752318	T	T	21752318	3	4	57	1	0	0	0	0	1	0	0	0	3128	884	31	4	475	4	CDH12	5	21752318	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5041041	21752318	159162942	736	63725											
CDH12	1010	broad.mit.edu	37	chr5	21883394	21883394	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccatactttattaatacatCaaaaggtcagaaatgtgaat	5	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883394	A	A	21883394	1	1	57	0	1	0	0	0	0	0	0	0	3128	841	29	3		3	CDH12	5	21883394	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	131076	21883394	159031866	737	63726											
PRDM9	56979	broad.mit.edu	37	chr5	23523499	23523499	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctctctgagttgcagagaGaaccttcatctctcacaaag	8	11	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23523499	C	C	23523499	1	2	57	0	1	0	0	0	0	0	0	0	12569	957	33	4		4	PRDM9	5	23523499	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1640105	23523499	157391761	738	63727											
PRDM9	56979	broad.mit.edu	37	chr5	23527708	23527708	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctatgtctgcagggagtgTgggcggggctttcgcaataa	15	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23527708	A	A	23527708	4	1	57	1	0	0	0	0	0	1	0	0	12569	1702	59	5	2549	5	PRDM9	5	23527708	Nonsense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	4209	23527708	157387552	739	63728											
CDH9	1007	broad.mit.edu	37	chr5	26906096	26906096	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatcgaggagggttgttgttGacatctgtcagcgtgatgtt	14	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906096	A	A	26906096	2	1	57	1	0	0	0	0	0	0	0	1	3147	1277	45	4		4	CDH9	5	26906096	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3378388	26906096	154009164	740	63729											
CDH6	1004	broad.mit.edu	37	chr5	31305638	31305638	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatcccttttgttccaattaGacaactgtgttttcctgaaa	5	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31305638	A	A	31305638	1	1	57	0	1	0	0	0	0	0	0	0	3144	957	33	4		4	CDH6	5	31305638	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4399542	31305638	149609622	741	63730											
CDH6	1004	broad.mit.edu	37	chr5	31323244	31323244	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgccccgccatacgactcCttggccacttacgcctatga	7	17	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31323244	G	G	31323244	2	3	57	1	0	0	0	0	0	0	0	1	3144	668	24	4		4	CDH6	5	31323244	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	17606	31323244	149592016	742	63731											
MTMR12	54545	broad.mit.edu	37	chr5	32230288	32230288	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacttgctatgccagctgtCatagaactctcgaaagttgt	10	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32230288	G	G	32230288	3	3	57	1	0	0	0	0	1	0	0	0	10035	826	29	4	407	4	MTMR12	5	32230288	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	907044	32230288	148684972	743	63732											
ZFR	51663	broad.mit.edu	37	chr5	32397493	32397493	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatagttgaagattatatCattcataaacccccacatat	3	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32397493	G	G	32397493	1	3	57	0	1	0	0	0	0	0	0	0	17785	841	29	4		4	ZFR	5	32397493	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	167205	32397493	148517767	744	63733											
ZFR	51663	broad.mit.edu	37	chr5	32404184	32404184	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttttatgtttctgtccttCtaaatgttctttataagtct	4	6	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32404184	T	T	32404184	3	4	57	1	0	0	0	0	1	0	0	0	17785	922	32	4	2229	4	ZFR	5	32404184	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6691	32404184	148511076	745	63734											
TARS	6897	broad.mit.edu	37	chr5	33455211	33455211	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaactgaagtcaatgaCtatggatccataagttattc	7	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33455211	G	G	33455211	1	3	57	0	1	0	0	0	0	0	0	0	15678	580	20	4		4	TARS	5	33455211	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1051027	33455211	147460049	746	63735											
ADAMTS12	81792	broad.mit.edu	37	chr5	33637777	33637777	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccgaaatgttggtgcctctGagcgacaggggtggacgttg	17	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33637777	C	C	33637777	4	2	57	1	0	0	0	0	0	1	0	0	257	1294	45	4	3043	4	ADAMTS12	5	33637777	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	182566	33637777	147277483	747	63736											
RAI14	26064	broad.mit.edu	37	chr5	34823763	34823763	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaataccaagaagcccaaGaagaaatcatgaaattaaaa	6	6	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34823763	A	A	34823763	3	1	57	1	0	0	0	0	1	0	0	0	13116	943	33	4	1935	4	RAI14	5	34823763	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1185986	34823763	146091497	748	63737											
RAD1	5810	broad.mit.edu	37	chr5	34911807	34911807	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcaaagtccagggtctcctCaggttcctgtgtattgattt	9	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34911807	T	T	34911807	3	4	57	1	0	0	0	0	1	0	0	0	13086	835	29	4	442	4	RAD1	5	34911807	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	88044	34911807	146003453	749	63738											
PRLR	5618	broad.mit.edu	37	chr5	35069108	35069108	+	Intron	SNP	C	G	G													tatttttttgatttgaacagCaatccaaagtatcatcaatg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35069108	G	G	35069108	1	3	57	0	1	0	0	0	0	0	0	0	12637	725	25	4		4	PRLR	5	35069108	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	157301	35069108	145846152	750	63739	294	2									
PRLR	5618	broad.mit.edu	37	chr5	35069110	35069110	+	Intron	SNP	A	T	T													tttttttgatttgaacagcaAtccaaagtatcatcaatgac							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35069110	T	T	35069110	1	4	57	0	1	0	0	0	0	0	0	0	12637	116	4	5		5	PRLR	5	35069110	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2	35069110	145846150	751	63740	294	2									
PRLR	5618	broad.mit.edu	37	chr5	35086356	35086356	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attggtaggaagtcctccatCtgtcccaggcctccaccagc	9	15	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35086356	G	G	35086356	3	3	57	1	0	0	0	0	1	0	0	0	12637	913	32	4	1739	4	PRLR	5	35086356	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	17246	35086356	145828904	752	63741											
IL7R	3575	broad.mit.edu	37	chr5	35874437	35874437	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcttaactgaaaagcaaCtttcaggaaataataagtgg	8	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35874437	T	T	35874437	1	4	57	0	1	0	0	0	0	0	0	0	7775	580	20	4		4	IL7R	5	35874437	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	788081	35874437	145040823	753	63742											
SKP2	6502	broad.mit.edu	37	chr5	36181812	36181812	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattgtaaattacactttcAgactgcattttgtagatgac	6	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36181812	G	G	36181812	1	3	57	0	1	0	0	0	0	0	0	0	14475	203	7	5		5	SKP2	5	36181812	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	307375	36181812	144733448	754	63743											
NIPBL	25836	broad.mit.edu	37	chr5	37060969	37060969	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattcagaagtactctccatCtgaatctgcaaaagtatatg	6	8	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37060969	G	G	37060969	3	3	57	1	0	0	0	0	1	0	0	0	10523	913	32	4	7883	4	NIPBL	5	37060969	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	879157	37060969	143854291	755	63744											
C5orf42	65250	broad.mit.edu	37	chr5	37180167	37180167	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcctcttctgtaaatgcttCtacttctaaaagattctcat	3	10	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37180167	G	G	37180167	3	3	57	1	0	0	0	0	1	0	0	0	2324	922	32	4	4004	4	C5orf42	5	37180167	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	119198	37180167	143735093	756	63745											
EGFLAM	133584	broad.mit.edu	37	chr5	38338834	38338834	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttggcgcagataaatcccTgcaggagcagttgcacagcg	14	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38338834	A	A	38338834	3	1	57	1	0	0	0	0	1	0	0	0	5006	1580	55	5	252	5	EGFLAM	5	38338834	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1158667	38338834	142576426	757	63746											
EGFLAM	133584	broad.mit.edu	37	chr5	38464007	38464007	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgggctgtatctctcacttCaccctgtccaccgattacca	7	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38464007	T	T	38464007	2	4	57	1	0	0	0	0	0	0	0	1	5006	825	29	4		4	EGFLAM	5	38464007	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	125173	38464007	142451253	758	63747											
RICTOR	253260	broad.mit.edu	37	chr5	38953092	38953092	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttaaatgacctaccctctGatggaaagaacttcacactg	7	10	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38953092	A	A	38953092	2	1	57	1	0	0	0	0	0	0	0	1	13467	1280	45	4		4	RICTOR	5	38953092	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	489085	38953092	141962168	759	63748											
FYB	2533	broad.mit.edu	37	chr5	39261720	39261720	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagccaagtgtggtggtgcGtgcctgtaatcccagctact	12	10	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39261720	C	C	39261720	1	2	57	0	1	0	0	0	0	0	0	0	6184	1160	40	4		4	FYB	5	39261720	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	308628	39261720	141653540	760	63749											
HEATR7B2	133558	broad.mit.edu	37	chr5	41004477	41004477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtccttgtttgcagcaCtatttccttgaagtagaagc	10	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41004477	A	A	41004477	3	1	57	1	0	0	0	0	1	0	0	0	7102	565	20	3	616	3	HEATR7B2	5	41004477	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1742757	41004477	139910783	761	63750											
MGC42105	167359	broad.mit.edu	37	chr5	43280109	43280109	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaaattattcatagagatCtgaaagcagaaaatgtattc	6	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43280109	G	G	43280109	3	3	57	1	0	0	0	0	1	0	0	0	9645	912	32	4	599	4	MGC42105	5	43280109	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2275632	43280109	137635151	762	63751											
HMGCS1	3157	broad.mit.edu	37	chr5	43292476	43292476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacagctagaatctactccCagagcccttactcttcttta	5	13	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43292476	A	A	43292476	1	1	57	0	1	0	0	0	0	0	0	0	7299	609	21	2		2	HMGCS1	5	43292476	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12367	43292476	137622784	763	63752											
ITGA1	3672	broad.mit.edu	37	chr5	52240774	52240774	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcctatttgcttttcagtCatatttttccagcttaaatc	3	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52240774	G	G	52240774	4	3	57	1	0	0	0	0	0	1	0	0	7942	840	29	4	3393	4	ITGA1	5	52240774	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8948298	52240774	128674486	764	63753											
GZMA	3001	broad.mit.edu	37	chr5	54403866	54403866	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgtaaaaactcacaaTaaagaggatcctgaaatttt	6	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54403866	C	C	54403866	1	2	57	0	1	0	0	0	0	0	0	0	6980	1421	49	5		5	GZMA	5	54403866	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2163092	54403866	126511394	765	63754											
DHX29	54505	broad.mit.edu	37	chr5	54572151	54572151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatggttacttcttcttcCtcttccagaaatttctgaca	4	10	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54572151	A	A	54572151	3	1	57	1	0	0	0	0	1	0	0	0	4543	680	24	2	1795	2	DHX29	5	54572151	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	168285	54572151	126343109	766	63755											
ISCA1P1	389293	broad.mit.edu	37	chr5	62072491	62072491	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaaaacaaaggatgcaagaGatctaaatgatccaaaaaga	7	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62072491	A	A	62072491	1	1	57	0	1	0	0	0	0	0	0	0	7920	957	33	4		4	ISCA1P1	5	62072491	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7500340	62072491	118842769	767	63756											
ADAMTS6	11174	broad.mit.edu	37	chr5	64492904	64492904	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttcaggtggcttactgtCaggatcacagtaattgttct	9	7	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64492904	A	A	64492904	3	1	57	1	0	0	0	0	1	0	0	0	270	826	29	3	723	3	ADAMTS6	5	64492904	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2420413	64492904	116422356	768	63757											
SFRS12	140890	broad.mit.edu	37	chr5	65474476	65474476	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttgcaaaagataaagtttCacatttttgtcgtcatagca	6	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65474476	A	A	65474476	1	1	57	0	1	0	0	0	0	0	0	0	14280	841	29	3		3	SFRS12	5	65474476	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	981572	65474476	115440784	769	63758											
MAST4	375449	broad.mit.edu	37	chr5	66460254	66460254	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcagcacccatgcagctcaGatgagtgccgtctcttttgt	10	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66460254	C	C	66460254	3	2	57	1	0	0	0	0	1	0	0	0	9419	933	33	4	5491	4	MAST4	5	66460254	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	985778	66460254	114455006	770	63759											
GCNT4	51301	broad.mit.edu	37	chr5	74325615	74325615	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccagactctttccaattTccaaaggctcctgttcatag	5	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74325615	A	A	74325615	3	1	57	1	0	0	0	0	1	0	0	0	6365	1783	62	5	1117	5	GCNT4	5	74325615	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	7865361	74325615	106589645	771	63760											
HMGCR	3156	broad.mit.edu	37	chr5	74646043	74646043	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacacagtttacctaaacaGaatcaataccttctaatgtc	3	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74646043	T	T	74646043	1	4	57	0	1	0	0	0	0	0	0	0	7298	957	33	3		3	HMGCR	5	74646043	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	320428	74646043	106269217	772	63761											
HMGCR	3156	broad.mit.edu	37	chr5	74647475	74647475	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcatttttcattacaaagGagctttttcaaggaagaaaa	8	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74647475	A	A	74647475	1	1	57	0	1	0	0	0	0	0	0	0	7298	1189	41	4		4	HMGCR	5	74647475	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1432	74647475	106267785	773	63762											
PDE8B	8622	broad.mit.edu	37	chr5	76640517	76640517	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atcacattggatgttagattCcaacatatgaactgttggga	9	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76640517	G	G	76640517	1	3	57	0	1	0	0	0	0	0	0	0	11748	870	30	4		4	PDE8B	5	76640517	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1993042	76640517	104274743	774	63763											
TBCA	6902	broad.mit.edu	37	chr5	77004067	77004067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttatgatataattttacCtgctttttaatgtcataatt	3	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77004067	A	A	77004067	3	1	57	1	0	0	0	0	1	0	0	0	15751	695	24	2	179	2	TBCA	5	77004067	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	363550	77004067	103911193	775	63764											
JMY	133746	broad.mit.edu	37	chr5	78610650	78610650	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaagctcagaaagactGctgaaggtttgcagaggagg	16	5	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78610650	A	A	78610650	3	1	57	1	0	0	0	0	1	0	0	0	8027	1319	46	4	2669	4	JMY	5	78610650	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1606583	78610650	102304610	776	63765											
VCAN	1462	broad.mit.edu	37	chr5	82835163	82835164	+	Frame_Shift_Ins	INS	-	A	A													caagaaattgaaagtgaaacINSaacatcagaggaacaaattc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82835164	A	A	82835163	7	5	57	1	0	1	1	0	0	0	0	0	17265	478	17	0	6367	0	VCAN	5	82835163	Frame_Shift_Ins	INS	-	TCGA-17-Z026-01A-01W-0746-08	4224513	82835163	98080097	777	63766											
MCTP1	79772	broad.mit.edu	37	chr5	94259620	94259620	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaactttcaaaattgctatCcaaaaccaaaaatcaagaat	3	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94259620	A	A	94259620	1	1	57	0	1	0	0	0	0	0	0	0	9493	870	30	3		3	MCTP1	5	94259620	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	11424457	94259620	86655640	778	63767											
SPATA9	83890	broad.mit.edu	37	chr5	95011344	95011344	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgcgcaggttctcttttCtgaaaaataggcctttgaaa	8	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95011344	G	G	95011344	5	3	57	1	0	0	0	0	0	0	1	0	15132	927	32	4	626	4	SPATA9	5	95011344	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	751724	95011344	85903916	779	63768											
RHOBTB3	22836	broad.mit.edu	37	chr5	95072761	95072761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagtaattattgctgctGttggtaccagacaaaatggt	9	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95072761	T	T	95072761	3	4	57	1	0	0	0	0	1	0	0	0	13444	1377	48	3	407	3	RHOBTB3	5	95072761	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	61417	95072761	85842499	780	63769											
ELL2	22936	broad.mit.edu	37	chr5	95234077	95234077	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttatgttttttagacttCtttttggactttttgtgaga	7	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95234077	G	G	95234077	3	3	57	1	0	0	0	0	1	0	0	0	5105	912	32	4	550	4	ELL2	5	95234077	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	161316	95234077	85681183	781	63770											
ELL2	22936	broad.mit.edu	37	chr5	95242433	95242433	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggggttgaccttttcctctCaggaactgtatctgaaacag	11	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95242433	G	G	95242433	3	3	57	1	0	0	0	0	1	0	0	0	5105	835	29	4	1419	4	ELL2	5	95242433	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8356	95242433	85672827	782	63771											
CHD1	1105	broad.mit.edu	37	chr5	98234347	98234347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcataaaaagaaagtttaaCtagaatcatttatcactaac	4	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98234347	A	A	98234347	1	1	57	0	1	0	0	0	0	0	0	0	3354	580	20	3		3	CHD1	5	98234347	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2991914	98234347	82680913	783	63772											
SLCO4C1	353189	broad.mit.edu	37	chr5	101599297	101599297	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataattcctcatgctatactGagggaagtactgtgaaaatg	9	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101599297	A	A	101599297	1	1	57	0	1	0	0	0	0	0	0	0	14844	1305	45	4		4	SLCO4C1	5	101599297	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3364950	101599297	79315963	784	63773											
SLCO6A1	133482	broad.mit.edu	37	chr5	101834473	101834473	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccttagcaggctgggcccGcgcggcctccagcggctcta	14	16	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101834473	C	C	101834473	3	2	57	1	0	0	0	0	1	0	0	0	14846	1086	38	4	2135	4	SLCO6A1	5	101834473	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	235176	101834473	79080787	785	63774											
PPIP5K2	23262	broad.mit.edu	37	chr5	102491652	102491652	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaatcgtaaggttcagttGacctatctccctcatggttg	8	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102491652	T	T	102491652	3	4	57	1	0	0	0	0	1	0	0	0	12434	1281	45	3	1493	3	PPIP5K2	5	102491652	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	657179	102491652	78423608	786	63775											
FER	2241	broad.mit.edu	37	chr5	108285565	108285565	+	Intron	DEL	A	-	-													aagaatatttgatactgaatAaaatgaaactatagcaaaaa							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108285565	-	-	108285565	6	5	57	0	1	1	0	1	0	0	0	0	5870	377	13	0		0	FER	5	108285565	Intron	DEL	A	TCGA-17-Z026-01A-01W-0746-08	5793913	108285565	72629695	787	63776											
FER	2241	broad.mit.edu	37	chr5	108521894	108521894	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttatggttgttgttcctCttccagggagatacagttca	11	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108521894	T	T	108521894	1	4	57	0	1	0	0	0	0	0	0	0	5870	928	32	4		4	FER	5	108521894	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	236329	108521894	72393366	788	63777											
CAMK4	814	broad.mit.edu	37	chr5	110565064	110565064	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccaagctctctggtgcctCttcttacaagtgcactgatc	7	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110565064	T	T	110565064	1	4	57	0	1	0	0	0	0	0	0	0	2631	928	32	4		4	CAMK4	5	110565064	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2043170	110565064	70350196	789	63778											
CAMK4	814	broad.mit.edu	37	chr5	110782432	110782432	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgatctcaaaccagagaatCttctttatgcaactccagcc	6	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110782432	T	T	110782432	3	4	57	1	0	0	0	0	1	0	0	0	2631	913	32	4	530	4	CAMK4	5	110782432	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	217368	110782432	70132828	790	63779											
APC	324	broad.mit.edu	37	chr5	112164574	112164574	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattgcgagtgttttgaggAatttgtcttggcgagcagat	13	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112164574	C	C	112164574	3	2	57	1	0	0	0	0	1	0	0	0	765	246	9	5	1698	5	APC	5	112164574	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1382142	112164574	68750686	791	63780											
SRP19	6728	broad.mit.edu	37	chr5	112197008	112197008	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctcggaaactcagagccGggttcctcccgggtttctgc	12	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112197008	T	T	112197008	1	4	57	0	1	0	0	0	0	0	0	0	15272	1131	39	1		1	SRP19	5	112197008	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	32434	112197008	68718252	792	63781											
MCC	4163	broad.mit.edu	37	chr5	112437459	112437459	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctccggagccggtcccgctCttcccggatggcattcatgg	12	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112437459	T	T	112437459	3	4	57	1	0	0	0	0	1	0	0	0	9466	922	32	4	1732	4	MCC	5	112437459	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	240451	112437459	68477801	793	63782											
FEM1C	56929	broad.mit.edu	37	chr5	114860290	114860290	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgttgtcatccgagtctctGacgttcacatcagcaccaca	7	14	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114860290	A	A	114860290	2	1	57	1	0	0	0	0	0	0	0	1	5868	1277	45	4		4	FEM1C	5	114860290	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2422831	114860290	66054970	794	63783											
AQPEP	206338	broad.mit.edu	37	chr5	115350152	115350152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttttgtaactgcgtgttGgttgggccttgaagactgcc	12	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115350152	T	T	115350152	3	4	57	1	0	0	0	0	1	0	0	0	836	1357	47	2	2440	2	AQPEP	5	115350152	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	489862	115350152	65565108	795	63784											
AQPEP	206338	broad.mit.edu	37	chr5	115351383	115351383	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaatgaaacaaatataattGaggttgtggcttcatctgaa	8	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115351383	A	A	115351383	3	1	57	1	0	0	0	0	1	0	0	0	836	1291	45	4	2747	4	AQPEP	5	115351383	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1231	115351383	65563877	796	63785											
AQPEP	206338	broad.mit.edu	37	chr5	115361549	115361549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacaacctaggagtataCatttctactcattccaacca	3	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115361549	A	A	115361549	1	1	57	0	1	0	0	0	0	0	0	0	836	493	17	3		3	AQPEP	5	115361549	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	10166	115361549	65553711	797	63786											
DTWD2	285605	broad.mit.edu	37	chr5	118176764	118176764	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaaaggagcataaagcttGaagagggcgaagcaaagtct	13	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118176764	A	A	118176764	4	1	57	1	0	0	0	0	0	1	0	0	4832	1299	45	4	155	4	DTWD2	5	118176764	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2815215	118176764	62738496	798	63787											
DMXL1	1657	broad.mit.edu	37	chr5	118454691	118454691	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaagaacgagttcaaaatGctttagaagtgagtgttttt	10	3	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118454691	A	A	118454691	3	1	57	1	0	0	0	0	1	0	0	0	4634	1319	46	4	955	4	DMXL1	5	118454691	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	277927	118454691	62460569	799	63788											
PRR16	51334	broad.mit.edu	37	chr5	120021881	120021881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcctccaaggttgacacCtgtgaagtgtgaagacccca	9	13	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120021881	A	A	120021881	3	1	57	1	0	0	0	0	1	0	0	0	12695	681	24	2	329	2	PRR16	5	120021881	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1567190	120021881	60893379	800	63789											
SNX2	6643	broad.mit.edu	37	chr5	122161712	122161712	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagtattttaaatgttactCttacttaatagcattatgtc	4	5	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122161712	G	G	122161712	1	3	57	0	1	0	0	0	0	0	0	0	15005	928	32	4		4	SNX2	5	122161712	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2139831	122161712	58753548	801	63790											
MEGF10	84466	broad.mit.edu	37	chr5	126783303	126783303	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagccactacttcaccaatcCcagttaccacacgctcaccc	3	19	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126783303	G	G	126783303	3	3	57	1	0	0	0	0	1	0	0	0	9553	623	22	4	2861	4	MEGF10	5	126783303	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4621591	126783303	54131957	802	63791											
PRRC1	133619	broad.mit.edu	37	chr5	126883539	126883539	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acattggttgtttggtggttGaagatcctgtccatggcatt	12	6	0	2	rs75277199		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126883539	T	T	126883539	4	4	57	1	0	0	0	0	0	1	0	0	12710	1291	45	3	1080	3	PRRC1	5	126883539	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	100236	126883539	54031721	803	63792											
FBN2	2201	broad.mit.edu	37	chr5	127595039	127595039	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaagacagggaggaaagaaAcaagagttattattattttt	9	3	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127595039	G	G	127595039	1	3	57	0	1	0	0	0	0	0	0	0	5760	58	2	5		5	FBN2	5	127595039	3'UTR	SNP	A	TCGA-17-Z026-01A-01W-0746-08	711500	127595039	53320221	804	63793											
FBN2	2201	broad.mit.edu	37	chr5	127609548	127609548	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaccttcacagttcagtccGgtggcatcaagagagaaccc	9	12	3	2	rs28763922	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127609548	T	T	127609548	2	4	57	1	0	0	0	0	0	0	0	1	5760	1103	39	1		1	FBN2	5	127609548	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	14509	127609548	53305712	805	63794											
FBN2	2201	broad.mit.edu	37	chr5	127614423	127614423	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcactggtggccccagcCtcgcccaccatcacagcagc	9	20	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127614423	A	A	127614423	3	1	57	1	0	0	0	0	1	0	0	0	5760	681	24	2	1525	2	FBN2	5	127614423	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4875	127614423	53300837	806	63795											
FBN2	2201	broad.mit.edu	37	chr5	127647203	127647203	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctttcaaaagtgtgatcttGtaagaatcagatttctatgc	8	6	4	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127647203	C	C	127647203	1	2	57	0	1	0	0	0	0	0	0	0	5760	1392	48	4		4	FBN2	5	127647203	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	32780	127647203	53268057	807	63796											
FBN2	2201	broad.mit.edu	37	chr5	127648641	127648641	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaagcaatctcctgcttttCagctttttcgagattgagtc	7	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127648641	T	T	127648641	1	4	57	0	1	0	0	0	0	0	0	0	5760	841	29	4		4	FBN2	5	127648641	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1438	127648641	53266619	808	63797											
CHSY3	337876	broad.mit.edu	37	chr5	129521162	129521162	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaaagactggattttggaGagactatggatatggcatca	11	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129521162	C	C	129521162	3	2	57	1	0	0	0	0	1	0	0	0	3444	942	33	4	2337	4	CHSY3	5	129521162	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1872521	129521162	51394098	809	63798											
CDC42SE2	56990	broad.mit.edu	37	chr5	130695316	130695316	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttctcaaactgaggattggGatcctagcagtaattgcaaa	10	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130695316	T	T	130695316	1	4	57	0	1	0	0	0	0	0	0	0	3110	1189	41	3		3	CDC42SE2	5	130695316	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1174154	130695316	50219944	810	63799											
CCNI2	645121	broad.mit.edu	37	chr5	132084263	132084263	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgagggtttccagatgctCaaaaccaaggtgtataaact	11	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132084263	G	G	132084263	1	3	57	0	1	0	0	0	0	0	0	0	2957	841	29	4		4	CCNI2	5	132084263	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1388947	132084263	48830997	811	63800											
TCF7	6932	broad.mit.edu	37	chr5	133482071	133482071	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccccacagaactgcttacTagccctgcggagccggcacc	9	17	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133482071	C	C	133482071	1	2	57	0	1	0	0	0	0	0	0	0	15818	1537	53	5		5	TCF7	5	133482071	3'UTR	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1397808	133482071	47433189	812	63801											
SAR1B	51128	broad.mit.edu	37	chr5	133942682	133942682	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcggaagccttctccgtaAccttgtcttttgagcacact	8	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133942682	C	C	133942682	2	2	57	1	0	0	0	0	0	0	0	1	13952	30	2	5		5	SAR1B	5	133942682	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	460611	133942682	46972578	813	63802											
TRPC7	57113	broad.mit.edu	37	chr5	135610372	135610372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtctgtaccttgctgcacgGagcaatccaataggctatgg	11	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135610372	T	T	135610372	3	4	57	1	0	0	0	0	1	0	0	0	16709	1174	41	3	1507	3	TRPC7	5	135610372	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1667690	135610372	45304888	814	63803											
KLHL3	26249	broad.mit.edu	37	chr5	137045486	137045486	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggctgccaggaccacaCggtgggcttctatctcgaca	12	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137045486	G	G	137045486	3	3	57	1	0	0	0	0	1	0	0	0	8454	536	19	4	1621	4	KLHL3	5	137045486	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1435114	137045486	43869774	815	63804											
PKD2L2	27039	broad.mit.edu	37	chr5	137243384	137243384	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cataggctgtaagatatttaGaggtagagatattctctaat	9	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137243384	A	A	137243384	1	1	57	0	1	0	0	0	0	0	0	0	12063	957	33	4		4	PKD2L2	5	137243384	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	197898	137243384	43671876	816	63805											
WNT8A	7478	broad.mit.edu	37	chr5	137423467	137423467	+	Intron	DEL	C	-	-													ggtaatcagggtccaggtttCcagtcagttccctctctctc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	137423467	-	-	137423467	6	5	57	0	1	1	0	1	0	0	0	0	17523	870	30	0		0	WNT8A	5	137423467	Intron	DEL	C	TCGA-17-Z026-01A-01W-0746-08	180083	137423467	43491793	817	63806											
KDM3B	51780	broad.mit.edu	37	chr5	137750928	137750928	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaattattcctggcacaGgtaaggaaattcctttttta	6	8	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137750928	A	A	137750928	3	1	57	1	0	0	0	0	1	0	0	0	8197	1014	35	4	3353	4	KDM3B	5	137750928	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	327461	137750928	43164332	818	63807											
KDM3B	51780	broad.mit.edu	37	chr5	137756415	137756415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagggtccctgaggtcgGtgctcaataaagagtctcat	12	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137756415	T	T	137756415	3	4	57	1	0	0	0	0	1	0	0	0	8197	1261	44	3	3794	3	KDM3B	5	137756415	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5487	137756415	43158845	819	63808											
MATR3	9782	broad.mit.edu	37	chr5	138655116	138655116	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccgcattctggctattctGatagtgctgttctcaagctt	9	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138655116	C	C	138655116	3	2	57	1	0	0	0	0	1	0	0	0	9429	1290	45	4	1558	4	MATR3	5	138655116	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	898701	138655116	42260144	820	63809											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139928881	139928881	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctggcatgtggagttacaGagggatccctcatgccactg	12	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139928881	A	A	139928881	1	1	57	0	1	0	0	0	0	0	0	0	629	957	33	4		4	ANKHD1-EIF4EBP3	5	139928881	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1273765	139928881	40986379	821	63810											
TMCO6	55374	broad.mit.edu	37	chr5	140021706	140021706	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgcttttgggaccagtttGagctggcaggtaggaggaag	17	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140021706	A	A	140021706	1	1	57	0	1	0	0	0	0	0	0	0	16123	1305	45	4		4	TMCO6	5	140021706	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	92825	140021706	40893554	822	63811											
PCDHA6	56142	broad.mit.edu	37	chr5	140209427	140209427	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagcgagctggtgccgcggtCactgggtgcaggccaagtgg	19	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140209427	T	T	140209427	3	4	57	1	0	0	0	0	1	0	0	0	11622	838	29	4	1753	4	PCDHA6	5	140209427	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	187721	140209427	40705833	823	63812											
PCDHA8	56140	broad.mit.edu	37	chr5	140223131	140223131	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caagcccactctggtgtgctCcagtgcggtggggagctggt	16	11	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140223131	G	G	140223131	3	3	57	1	0	0	0	0	1	0	0	0	11624	855	30	4	2227	4	PCDHA8	5	140223131	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13704	140223131	40692129	824	63813											
PCDHB4	56131	broad.mit.edu	37	chr5	140501962	140501962	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatccaggacataaatgatCactctccaatattccctgaa	5	11	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140501962	T	T	140501962	3	4	57	1	0	0	0	0	1	0	0	0	11638	826	29	4	384	4	PCDHB4	5	140501962	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	278831	140501962	40413298	825	63814											
PCDHB6	56130	broad.mit.edu	37	chr5	140530412	140530412	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgaaggcaggaagttcccgGagctggtgctagacaaaccg	15	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140530412	T	T	140530412	4	4	57	1	0	0	0	0	0	1	0	0	11640	1175	41	3	576	3	PCDHB6	5	140530412	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	28450	140530412	40384848	826	63815											
PCDHB6	56130	broad.mit.edu	37	chr5	140531612	140531612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggtggtggcggtggacGgcgactcgggccagaacgcc	18	12	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140531612	T	T	140531612	3	4	57	1	0	0	0	0	1	0	0	0	11640	1116	39	1	1776	1	PCDHB6	5	140531612	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1200	140531612	40383648	827	63816											
PCDHB12	56124	broad.mit.edu	37	chr5	140589561	140589561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaatcccagaaaacactcCagagactgtggttatggttt	8	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140589561	A	A	140589561	3	1	57	1	0	0	0	0	1	0	0	0	11631	594	21	2	1084	2	PCDHB12	5	140589561	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	57949	140589561	40325699	828	63817											
PCDHGA3	56112	broad.mit.edu	37	chr5	140724883	140724883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgagagcctcagatggggGaagcccgccactgtccacag	13	13	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140724883	T	T	140724883	3	4	57	1	0	0	0	0	1	0	0	0	11649	1174	41	3	1285	3	PCDHGA3	5	140724883	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	135322	140724883	40190377	829	63818											
PCDHGA3	56112	broad.mit.edu	37	chr5	140726007	140726007	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttacttgaaatgaaaggaGattccaacctacttcaggtg	8	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140726007	A	A	140726007	3	1	57	1	0	0	0	0	1	0	0	0	11649	942	33	4	2409	4	PCDHGA3	5	140726007	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1124	140726007	40189253	830	63819											
PCDHGA4	56111	broad.mit.edu	37	chr5	140735631	140735631	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggaaagtaagagacaaaatAtcacagctatttcagttgaa	8	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140735631	T	T	140735631	2	4	57	1	0	0	0	0	0	0	0	1	11650	439	16	5		5	PCDHGA4	5	140735631	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	9624	140735631	40179629	831	63820											
PCDHGA6	56109	broad.mit.edu	37	chr5	140754546	140754546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtttgaatgttttgactgGagaaatttcaacttctgcaa	8	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140754546	T	T	140754546	3	4	57	1	0	0	0	0	1	0	0	0	11652	1174	41	3	898	3	PCDHGA6	5	140754546	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	18915	140754546	40160714	832	63821											
PCDHGB6	56100	broad.mit.edu	37	chr5	140789008	140789008	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggagccctggaccgagaGcagacaccagaatacaatgt	12	10	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140789008	A	A	140789008	2	1	57	1	0	0	0	0	0	0	0	1	11661	962	34	4		4	PCDHGB6	5	140789008	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	34462	140789008	40126252	833	63822											
PCDHGA10	56106	broad.mit.edu	37	chr5	140794648	140794648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcgcacggcgcgagccCtgctggacagagacgcgctc	16	14	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140794648	A	A	140794648	3	1	57	1	0	0	0	0	1	0	0	0	11645	680	24	2	1908	2	PCDHGA10	5	140794648	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5640	140794648	40120612	834	63823											
PCDHGC3	5098	broad.mit.edu	37	chr5	140856119	140856119	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatgaaattggagattagcGaggccgtggctccggggacg	16	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140856119	A	A	140856119	3	1	57	1	0	0	0	0	1	0	0	0	11663	1059	37	4	438	4	PCDHGC3	5	140856119	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	61471	140856119	40059141	835	63824											
PCDH1	5097	broad.mit.edu	37	chr5	141236898	141236898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggcagggccaggggacCgagtcgaggccctgaggatg	18	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141236898	A	A	141236898	3	1	57	1	0	0	0	0	1	0	0	0	11600	652	23	1	483	1	PCDH1	5	141236898	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	380779	141236898	39678362	836	63825											
ARHGAP26	23092	broad.mit.edu	37	chr5	142206329	142206337	+	Intron	DEL	GTGCCTATC	-	-													aggtcagtctgctgtcctctGtgcctatctccaccaagccc					rs113029286		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142206337	-	-	142206329	6	5	57	0	1	1	0	1	0	0	0	0	877	1392	48	0		0	ARHGAP26	5	142206329	Intron	DEL	GTGCCTATC	TCGA-17-Z026-01A-01W-0746-08	969431	142206329	38708931	837	63826											
YIPF5	81555	broad.mit.edu	37	chr5	143545014	143545014	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttctaataaaggtggctCatcctcaaagttgtttccat	6	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143545014	T	T	143545014	3	4	57	1	0	0	0	0	1	0	0	0	17608	835	29	4	524	4	YIPF5	5	143545014	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1338685	143545014	37370246	838	63827											
PRELID2	153768	broad.mit.edu	37	chr5	145175992	145175992	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attaatgttggttcaaagcaGaaatatggttaccttctggg	10	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145175992	C	C	145175992	1	2	57	0	1	0	0	0	0	0	0	0	12578	957	33	4		4	PRELID2	5	145175992	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1630978	145175992	35739268	839	63828											
RBM27	54439	broad.mit.edu	37	chr5	145651095	145651095	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgaggaaagaccatgtcctCtcaaggtcgaggaagaggcc	13	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145651095	G	G	145651095	3	3	57	1	0	0	0	0	1	0	0	0	13235	913	32	4	2920	4	RBM27	5	145651095	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	475103	145651095	35264165	840	63829											
TCERG1	10915	broad.mit.edu	37	chr5	145851019	145851019	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattcaggtattgttaatgtGatactaattagagtaatatc	7	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145851019	T	T	145851019	1	4	57	0	1	0	0	0	0	0	0	0	15807	1305	45	3		3	TCERG1	5	145851019	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	199924	145851019	35064241	841	63830											
PPP2R2B	5521	broad.mit.edu	37	chr5	146435096	146435096	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagcagatctaagtctgtTggatacaagcttttgccagg	11	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146435096	A	A	146435096	1	1	57	0	1	0	0	0	0	0	0	0	12486	1827	63	5		5	PPP2R2B	5	146435096	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	584077	146435096	34480164	842	63831											
PPP2R2B	5521	broad.mit.edu	37	chr5	146435114	146435114	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttggatacaagcttttgccAggaatgacagtcacctagta	10	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146435114	T	T	146435114	1	4	57	0	1	0	0	0	0	0	0	0	12486	203	7	5		5	PPP2R2B	5	146435114	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	18	146435114	34480146	843	63832											
HTR4	3360	broad.mit.edu	37	chr5	147929617	147929617	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttcttaattacaaattCtaatagaaatgttcacaccc	2	9	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147929617	G	G	147929617	1	3	57	0	1	0	0	0	0	0	0	0	7519	928	32	4		4	HTR4	5	147929617	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1494503	147929617	32985643	844	63833											
SH3TC2	79628	broad.mit.edu	37	chr5	148388385	148388385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactaatcacccctctcattCaacacacccaatagtgaaga	4	14	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148388385	A	A	148388385	1	1	57	0	1	0	0	0	0	0	0	0	14375	841	29	3		3	SH3TC2	5	148388385	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	458768	148388385	32526875	845	63834											
ABLIM3	22885	broad.mit.edu	37	chr5	148630009	148630009	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctctagatccttcttttcaGatcctctcatctccaaatct	3	14	6	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148630009	T	T	148630009	5	4	57	1	0	0	0	0	0	0	1	0	96	956	33	3	1803	3	ABLIM3	5	148630009	Splice_Site	SNP	G	TCGA-17-Z026-01A-01W-0746-08	241624	148630009	32285251	846	63835											
ABLIM3	22885	broad.mit.edu	37	chr5	148637877	148637877	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctgtcccaggaagagttCtaccaagtctttggcatgac	9	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148637877	G	G	148637877	3	3	57	1	0	0	0	0	1	0	0	0	96	912	32	4	2052	4	ABLIM3	5	148637877	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7868	148637877	32277383	847	63836											
PDE6A	5145	broad.mit.edu	37	chr5	149311868	149311868	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctttttagtcggccaaCtgcacggatttcttcatttt	6	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149311868	T	T	149311868	1	4	57	0	1	0	0	0	0	0	0	0	11739	580	20	4		4	PDE6A	5	149311868	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	673991	149311868	31603392	848	63837											
CSF1R	1436	broad.mit.edu	37	chr5	149433716	149433716	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaggtgctcactagagctCtcctcctccagctcactgct	8	16	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149433716	T	T	149433716	2	4	57	1	0	0	0	0	0	0	0	1	3966	912	32	4		4	CSF1R	5	149433716	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	121848	149433716	31481544	849	63838											
NDST1	3340	broad.mit.edu	37	chr5	149907591	149907591	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggccaagacgcgctcgtctGagtccatcccacacctgggc	11	16	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149907591	C	C	149907591	3	2	57	1	0	0	0	0	1	0	0	0	10350	1291	45	4	745	4	NDST1	5	149907591	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	473875	149907591	31007669	850	63839											
SLC36A3	285641	broad.mit.edu	37	chr5	150677979	150677979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatggtgtgcccccttcaGggatgctcaggttggaccca	13	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150677979	T	T	150677979	1	4	57	0	1	0	0	0	0	0	0	0	14709	1015	35	2		2	SLC36A3	5	150677979	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	770388	150677979	30237281	851	63840											
FAT2	2196	broad.mit.edu	37	chr5	150948363	150948363	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtcttgggagaagaattttCatagatggtggcattgtaat	13	3	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150948363	T	T	150948363	3	4	57	1	0	0	0	0	1	0	0	0	5747	835	29	4	13011	4	FAT2	5	150948363	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	270384	150948363	29966897	852	63841											
GLRA1	2741	broad.mit.edu	37	chr5	151274838	151274838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtgtgtatgtgagctgTatatatacatggggtatagg	14	2	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151274838	C	C	151274838	1	2	57	0	1	0	0	0	0	0	0	0	6518	1653	57	5		5	GLRA1	5	151274838	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	326475	151274838	29640422	853	63842											
SAP30L	79685	broad.mit.edu	37	chr5	153830579	153830579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaatggaaggaagccccGcaattcgacagatacctatt	9	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153830579	T	T	153830579	1	4	57	0	1	0	0	0	0	0	0	0	13947	1102	38	3		3	SAP30L	5	153830579	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2555741	153830579	27084681	854	63843											
KIF4B	285643	broad.mit.edu	37	chr5	154394300	154394300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagagattccaagttaaCtcgactgctgcaagattctc	7	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154394300	A	A	154394300	3	1	57	1	0	0	0	0	1	0	0	0	8374	565	20	3	883	3	KIF4B	5	154394300	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	563721	154394300	26520960	855	63844											
TIMD4	91937	broad.mit.edu	37	chr5	156378570	156378570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctcgggagtcagaagaCctgtggcttcctccggaagg	15	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156378570	A	A	156378570	3	1	57	1	0	0	0	0	1	0	0	0	16026	507	18	3	532	3	TIMD4	5	156378570	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1984270	156378570	24536690	856	63845											
MED7	9443	broad.mit.edu	37	chr5	156565908	156565908	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttactctcattcctgcttCtgaatgaggcaaatcatcag	6	10	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156565908	G	G	156565908	3	3	57	1	0	0	0	0	1	0	0	0	9545	922	32	4	170	4	MED7	5	156565908	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	187338	156565908	24349352	857	63846											
ADAM19	8728	broad.mit.edu	37	chr5	156940497	156940497	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttggtggcgtcctggtctCgtcgattcttctgaaactaa	11	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156940497	T	T	156940497	3	4	57	1	0	0	0	0	1	0	0	0	240	884	31	4	2137	4	ADAM19	5	156940497	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	374589	156940497	23974763	858	63847											
CLINT1	9685	broad.mit.edu	37	chr5	157241262	157241262	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcacttgtaacaacacgctCtgatccattccttatgaggt	8	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157241262	A	A	157241262	4	1	57	1	0	0	0	0	0	1	0	0	3563	922	32	3	1630	3	CLINT1	5	157241262	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	300765	157241262	23673998	859	63848											
EBF1	1879	broad.mit.edu	37	chr5	158338041	158338041	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtcaggggagagtaccgaGagcccagcagagagaatttc	14	9	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158338041	C	C	158338041	1	2	57	0	1	0	0	0	0	0	0	0	4920	957	33	4		4	EBF1	5	158338041	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1096779	158338041	22577219	860	63849											
GABRA1	2554	broad.mit.edu	37	chr5	161292628	161292629	+	Intron	DNP	AA	TT	TT													aattttagaaatagctaatcAaagacaatcaatttcccatt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	161292629	TT	TT	161292628	1	4	57	0	1	0	0	0	0	0	0	0	6220	145	5	5		5	GABRA1	5	161292628	Intron	DNP	AA	TCGA-17-Z026-01A-01W-0746-08	2954587	161292628	19622632	861	63850											
GABRG2	2566	broad.mit.edu	37	chr5	161520822	161520822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgttttttgaccaatatGttttttcttagcttcactag	6	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161520822	T	T	161520822	1	4	57	0	1	0	0	0	0	0	0	0	6232	1392	48	3		3	GABRG2	5	161520822	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	228194	161520822	19394438	862	63851											
GABRG2	2566	broad.mit.edu	37	chr5	161569021	161569021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcatttttgttttttaaCccaagcgggcaaaaatagtt	7	6	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161569021	A	A	161569021	1	1	57	0	1	0	0	0	0	0	0	0	6232	522	18	3		3	GABRG2	5	161569021	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	48199	161569021	19346239	863	63852											
ODZ2	57451	broad.mit.edu	37	chr5	167642021	167642021	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatagccccctcctcatttCtctttgtgcttcttctacta	3	16	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167642021	A	A	167642021	1	1	57	0	1	0	0	0	0	0	0	0	10930	928	32	3		3	ODZ2	5	167642021	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6073000	167642021	13273239	864	63853											
ODZ2	57451	broad.mit.edu	37	chr5	167645751	167645751	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtacttgtacaatttcacaTatagtactgacaatgatgtc	6	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167645751	C	C	167645751	3	2	57	1	0	0	0	0	1	0	0	0	10930	1406	49	5	4918	5	ODZ2	5	167645751	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3730	167645751	13269509	865	63854											
SLIT3	6586	broad.mit.edu	37	chr5	168093540	168093540	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtccgtgcactggaagacGtatttccgccgcttgctgcg	12	14	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168093540	T	T	168093540	4	4	57	1	0	0	0	0	0	1	0	0	14855	1140	40	3	84	3	SLIT3	5	168093540	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	447789	168093540	12821720	866	63855											
SLIT3	6586	broad.mit.edu	37	chr5	168139250	168139250	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacactttcatgctttcatGttttgaatgttcattgggga	9	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168139250	A	A	168139250	1	1	57	0	1	0	0	0	0	0	0	0	14855	1392	48	4		4	SLIT3	5	168139250	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	45710	168139250	12776010	867	63856											
SLIT3	6586	broad.mit.edu	37	chr5	168250306	168250306	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggttgaagctggtgaccagGatgcgactgatgttgttgtt	15	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168250306	T	T	168250306	2	4	57	1	0	0	0	0	0	0	0	1	14855	1164	41	3		3	SLIT3	5	168250306	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	111056	168250306	12664954	868	63857											
SLIT3	6586	broad.mit.edu	37	chr5	168250562	168250562	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttccctctactgtcctctCaggacttgcctacccacctt	4	19	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168250562	T	T	168250562	1	4	57	0	1	0	0	0	0	0	0	0	14855	841	29	4		4	SLIT3	5	168250562	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	256	168250562	12664698	869	63858											
DOCK2	1794	broad.mit.edu	37	chr5	169147345	169147345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagtgagaatgttttatGtataagtagaatatgtcttt	8	3	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169147345	T	T	169147345	1	4	57	0	1	0	0	0	0	0	0	0	4727	1392	48	3		3	DOCK2	5	169147345	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	896783	169147345	11767915	870	63859											
DOCK2	1794	broad.mit.edu	37	chr5	169508806	169508806	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccaaggcactgcccctcctCtacccacccattcacacccc	3	24	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169508806	T	T	169508806	1	4	57	0	1	0	0	0	0	0	0	0	4727	928	32	4		4	DOCK2	5	169508806	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	361461	169508806	11406454	871	63860											
LCP2	3937	broad.mit.edu	37	chr5	169689934	169689934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaggacaagatgtgaaaCaaacaaacacaaccaaaaaa	5	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169689934	A	A	169689934	1	1	57	0	1	0	0	0	0	0	0	0	8764	493	17	3		3	LCP2	5	169689934	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	181128	169689934	11225326	872	63861											
LCP2	3937	broad.mit.edu	37	chr5	169694092	169694093	+	Intron	DNP	CC	AG	AG													ggcagtggctgcataaagatCcaaacgttaggaagcacttc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	169694093	AG	AG	169694092	1	1	57	0	1	0	0	0	0	0	0	0	8764	870	30	3		3	LCP2	5	169694092	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	4158	169694092	11221168	873	63862											
RANBP17	64901	broad.mit.edu	37	chr5	170640726	170640726	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatcttgaaacttatggcaGaacttatgcaaaacaggtaa	7	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170640726	C	C	170640726	3	2	57	1	0	0	0	0	1	0	0	0	13135	943	33	4	2405	4	RANBP17	5	170640726	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	946634	170640726	10274534	874	63863											
CPLX2	10814	broad.mit.edu	37	chr5	175303167	175303167	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcacatacacacatacataCctcagaatgtaatctgcatg	4	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175303167	G	G	175303167	1	3	57	0	1	0	0	0	0	0	0	0	3837	522	18	4		4	CPLX2	5	175303167	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4662441	175303167	5612093	875	63864											
C5orf25	375484	broad.mit.edu	37	chr5	175722177	175722177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaccaagagaaatcgtgGctcacatcatccagaaaatc	6	13	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175722177	T	T	175722177	3	4	57	1	0	0	0	0	1	0	0	0	2311	1203	42	3	280	3	C5orf25	5	175722177	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	419010	175722177	5193083	876	63865											
ZFP2	80108	broad.mit.edu	37	chr5	178359027	178359027	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatcagagaactcatacagGagaaaaaccctatgaatgta	7	8	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178359027	C	C	178359027	3	2	57	1	0	0	0	0	1	0	0	0	17767	1174	41	4	715	4	ZFP2	5	178359027	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2636850	178359027	2556233	877	63866											
HNRNPH1	3187	broad.mit.edu	37	chr5	179044502	179044502	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttaagagcccacaaatgctCaatcacacttacgcatattt	5	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179044502	T	T	179044502	1	4	57	0	1	0	0	0	0	0	0	0	7333	841	29	4		4	HNRNPH1	5	179044502	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	685475	179044502	1870758	878	63867											
HNRNPH1	3187	broad.mit.edu	37	chr5	179048375	179048375	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagatgaaacgaataccttGagccccattttgaattttgc	8	8	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179048375	C	C	179048375	3	2	57	1	0	0	0	0	1	0	0	0	7333	1299	45	4	1272	4	HNRNPH1	5	179048375	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3873	179048375	1866885	879	63868											
FLT4	2324	broad.mit.edu	37	chr5	180038434	180038434	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcgagaagctgccctcttCtgagctctgagagctgcgcg	13	13	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180038434	T	T	180038434	3	4	57	1	0	0	0	0	1	0	0	0	6002	922	32	4	532	4	FLT4	5	180038434	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	990059	180038434	876826	880	63869											
TUBB2A	7280	broad.mit.edu	37	chr6	3155153	3155153	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagttattcccggctccactCtggcctgccagagggaaagt	11	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3155153	G	G	3155153	3	3	57	1	0	0	0	0	1	0	0	0	16880	912	32	4	1059	4	TUBB2A	6	3155153	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08		3155153	167959914	881	63870											
NRN1	51299	broad.mit.edu	37	chr6	6007028	6007028	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accgcagacctttaaatagtTagtttagagaacgcggggga	12	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6007028	C	C	6007028	1	2	57	0	1	0	0	0	0	0	0	0	10753	1769	61	5		5	NRN1	6	6007028	5'UTR	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2851875	6007028	165108039	882	63871											
CAGE1	285782	broad.mit.edu	37	chr6	7356309	7356309	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacttgtcattttcttcaatGagtctgttgcagtggttttc	8	7	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7356309	C	C	7356309	2	2	57	1	0	0	0	0	0	0	0	1	2598	1277	45	4		4	CAGE1	6	7356309	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1349281	7356309	163758758	883	63872											
DSP	1832	broad.mit.edu	37	chr6	7586071	7586071	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacagggaattcttcctactCttattcctactcatttagca	4	12	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7586071	G	G	7586071	3	3	57	1	0	0	0	0	1	0	0	0	4821	913	32	4	8670	4	DSP	6	7586071	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	229762	7586071	163528996	884	63873											
GCNT2	2651	broad.mit.edu	37	chr6	10556885	10556885	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgcaaggaatacttgAcccagagccactacatcaca	6	13	2	2	rs56034304		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10556885	T	T	10556885	1	4	57	0	1	0	0	0	0	0	0	0	6363	275	10	5		5	GCNT2	6	10556885	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2970814	10556885	160558182	885	63874											
TBC1D7	51256	broad.mit.edu	37	chr6	13288654	13288654	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcgatttccttcataacaGagctcgcaggccctcagttg	8	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13288654	T	T	13288654	1	4	57	0	1	0	0	0	0	0	0	0	15746	957	33	3		3	TBC1D7	6	13288654	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2731769	13288654	157826413	886	63875											
GFOD1	54438	broad.mit.edu	37	chr6	13420075	13420075	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttccttcaaatctctaCttaaacgtcccctcttcgga	4	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13420075	G	G	13420075	1	3	57	0	1	0	0	0	0	0	0	0	6407	580	20	4		4	GFOD1	6	13420075	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	131421	13420075	157694992	887	63876											
MBOAT1	154141	broad.mit.edu	37	chr6	20126579	20126579	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaaaataaacacccattgCtgcaaaatagaactgctgca	6	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20126579	G	G	20126579	1	3	57	0	1	0	0	0	0	0	0	0	9449	812	28	4		4	MBOAT1	6	20126579	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6706504	20126579	150988488	888	63877											
CDKAL1	54901	broad.mit.edu	37	chr6	20781382	20781382	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttgatttgaaggtcactCtgtgagactgctgggtcaga	13	7	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20781382	T	T	20781382	3	4	57	1	0	0	0	0	1	0	0	0	3182	913	32	4	546	4	CDKAL1	6	20781382	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	654803	20781382	150333685	889	63878											
LRRC16A	55604	broad.mit.edu	37	chr6	25495466	25495466	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagtggttaattcactttctCcagagcttttaaagttcaac	7	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25495466	T	T	25495466	1	4	57	0	1	0	0	0	0	0	0	0	9058	870	30	4		4	LRRC16A	6	25495466	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4714084	25495466	145619601	890	63879											
SLC17A4	10050	broad.mit.edu	37	chr6	25776765	25776765	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacagtctgtccaaggttgtCtgtgtcgtggtgggggtggt	18	6	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25776765	T	T	25776765	1	4	57	0	1	0	0	0	0	0	0	0	14532	928	32	4		4	SLC17A4	6	25776765	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	281299	25776765	145338302	891	63880											
HIST1H3B	8358	broad.mit.edu	37	chr6	26031919	26031919	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcggcgagcgagctggatgtCtttgggcataatagtcactc	14	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26031919	T	T	26031919	3	4	57	1	0	0	0	0	1	0	0	0	7223	913	32	4	44	4	HIST1H3B	6	26031919	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	255154	26031919	145083148	892	63881											
HIST1H1E	3008	broad.mit.edu	37	chr6	26157188	26157188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcccaagagcccagcgaaGgccaaagcagttaaacccaa	10	14	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26157188	T	T	26157188	3	4	57	1	0	0	0	0	1	0	0	0	7193	991	35	2	572	2	HIST1H1E	6	26157188	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	125269	26157188	144957879	893	63882											
HIST1H2BG	8339	broad.mit.edu	37	chr6	26216650	26216650	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacgggaagcctcgcctgcGatgcgttcgaagatgtcgtt	14	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26216650	A	A	26216650	2	1	57	1	0	0	0	0	0	0	0	1	7213	1048	37	4		4	HIST1H2BG	6	26216650	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	59462	26216650	144898417	894	63883											
BTN2A1	11120	broad.mit.edu	37	chr6	26459904	26459904	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagcagatggaggagtaccGaggaagaaccacctttgtga	15	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26459904	A	A	26459904	3	1	57	1	0	0	0	0	1	0	0	0	1570	1058	37	4	284	4	BTN2A1	6	26459904	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	243254	26459904	144655163	895	63884											
ZNF184	7738	broad.mit.edu	37	chr6	27425159	27425159	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcttcctgggtaaagtcCactatcacatccttgaaagt	6	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27425159	A	A	27425159	2	1	57	1	0	0	0	0	0	0	0	1	17877	581	21	2		2	ZNF184	6	27425159	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	965255	27425159	143689908	896	63885											
OR12D3	81797	broad.mit.edu	37	chr6	29343004	29343004	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagaagaaaggctgcaGctcctgaacaccagtcaggc	10	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29343004	A	A	29343004	2	1	57	1	0	0	0	0	0	0	0	1	11026	962	34	4		4	OR12D3	6	29343004	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1917845	29343004	141772063	897	63886											
HLA-A	3105	broad.mit.edu	37	chr6	29910337	29910337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagacgccgaggatggccGtcatggcgccccgaaccctc	12	18	1	1	rs41541013		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29910337	A	A	29910337	3	1	57	1	0	0	0	0	1	0	0	0	7262	1145	40	4	9	4	HLA-A	6	29910337	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	567333	29910337	141204730	898	63887											
TRIM15	89870	broad.mit.edu	37	chr6	30131761	30131761	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcgagaacgatgccgagttCctctgtgtgttctgcaggga	14	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30131761	T	T	30131761	2	4	57	1	0	0	0	0	0	0	0	1	16614	854	30	4		4	TRIM15	6	30131761	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	221424	30131761	140983306	899	63888											
HLA-E	3133	broad.mit.edu	37	chr6	30460194	30460194	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaacaggtggaaaaggaggGagctactctaaggctgagtg	15	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30460194	C	C	30460194	2	2	57	1	0	0	0	0	0	0	0	1	7277	1161	41	4		4	HLA-E	6	30460194	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	328433	30460194	140654873	900	63889											
MDC1	9656	broad.mit.edu	37	chr6	30673605	30673605	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggcagcagaggtagctgGaaagggtgtcattctggagg	19	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30673605	T	T	30673605	3	4	57	1	0	0	0	0	1	0	0	0	9496	1174	41	3	2938	3	MDC1	6	30673605	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	213411	30673605	140441462	901	63890											
BAT2	7916	broad.mit.edu	37	chr6	31598920	31598920	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtctgtctcttcaggagcGagactcctccagtacctccc	8	16	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31598920	A	A	31598920	3	1	57	1	0	0	0	0	1	0	0	0	1324	1059	37	4	2528	4	BAT2	6	31598920	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	925315	31598920	139516147	902	63891											
NEU1	4758	broad.mit.edu	37	chr6	31829061	31829061	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaaacaccatcatccttgctCcataccaacatggtagaggc	7	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31829061	G	G	31829061	3	3	57	1	0	0	0	0	1	0	0	0	10436	856	30	4	744	4	NEU1	6	31829061	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	230141	31829061	139286006	903	63892											
TNXB	7148	broad.mit.edu	37	chr6	32046820	32046820	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcactcacctgtcacgccCacggcggacaccgggcccac	9	21	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32046820	T	T	32046820	2	4	57	1	0	0	0	0	0	0	0	1	16469	581	21	4		4	TNXB	6	32046820	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	217759	32046820	139068247	904	63893											
NOTCH4	4855	broad.mit.edu	37	chr6	32166193	32166193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttggtctgggttgactcaCataccaggtccacgggtgtc	12	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32166193	T	T	32166193	1	4	57	0	1	0	0	0	0	0	0	0	10646	493	17	4		4	NOTCH4	6	32166193	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	119373	32166193	138948874	905	63894											
HLA-DRA	3122	broad.mit.edu	37	chr6	32410341	32410341	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatggcaaagaaggagacgGtctggcggcttgaagaattt	14	5	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32410341	A	A	32410341	3	1	57	1	0	0	0	0	1	0	0	0	7274	1261	44	4	205	4	HLA-DRA	6	32410341	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	244148	32410341	138704726	906	63895											
TAP2	6891	broad.mit.edu	37	chr6	32800459	32800459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccgccaatacagctgcCgacattgttcaagggcctct	8	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32800459	A	A	32800459	3	1	57	1	0	0	0	0	1	0	0	0	15670	652	23	1	1085	1	TAP2	6	32800459	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	390118	32800459	138314608	907	63896											
COL11A2	1302	broad.mit.edu	37	chr6	33153523	33153523	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcacatcataatagggGggctcgtagtcatagtagag	12	7	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33153523	C	C	33153523	2	2	57	1	0	0	0	0	0	0	0	1	3700	1219	43	4		4	COL11A2	6	33153523	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	353064	33153523	137961544	908	63897											
DAXX	1616	broad.mit.edu	37	chr6	33289173	33289173	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtgcagagctcattgaTgtagacatagagcttggctg	12	7	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33289173	C	C	33289173	3	2	57	1	0	0	0	0	1	0	0	0	4276	1464	51	5	1867	5	DAXX	6	33289173	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	135650	33289173	137825894	909	63898											
KIFC1	3833	broad.mit.edu	37	chr6	33372891	33372891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttccctctggccctggtgGgccctctgatcctccaaccc	9	18	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33372891	T	T	33372891	3	4	57	1	0	0	0	0	1	0	0	0	8382	1232	43	2	1045	2	KIFC1	6	33372891	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	83718	33372891	137742176	910	63899											
SYNGAP1	8831	broad.mit.edu	37	chr6	33410885	33410885	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacagggtgatgggcctggTggccgcctcaacagcagcag	15	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33410885	A	A	33410885	2	1	57	1	0	0	0	0	0	0	0	1	15566	1683	59	5		5	SYNGAP1	6	33410885	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	37994	33410885	137704182	911	63900											
SYNGAP1	8831	broad.mit.edu	37	chr6	33411147	33411147	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatggctgctgatgggccaGgtcccccaggcggccatgga	15	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33411147	C	C	33411147	3	2	57	1	0	0	0	0	1	0	0	0	15566	1000	35	4	2876	4	SYNGAP1	6	33411147	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	262	33411147	137703920	912	63901											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34802578	34802578	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatggtgatcaggacccagtCaccactccattgaggcttat	9	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34802578	A	A	34802578	2	1	57	1	0	0	0	0	0	0	0	1	17094	813	29	3		3	UHRF1BP1	6	34802578	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1391431	34802578	136312489	913	63902											
PPIL1	51645	broad.mit.edu	37	chr6	36824376	36824376	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttacccgtgaatttcaagTctggatgaagttcatcttca	7	9	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36824376	A	A	36824376	3	1	57	1	0	0	0	0	1	0	0	0	12427	1667	58	5	242	5	PPIL1	6	36824376	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2021798	36824376	134290691	914	63903											
FTSJD2	23070	broad.mit.edu	37	chr6	37430911	37430911	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattggcaactgggtttggtCtgctggtttcagggctccct	13	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37430911	T	T	37430911	1	4	57	0	1	0	0	0	0	0	0	0	6151	928	32	4		4	FTSJD2	6	37430911	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	606535	37430911	133684156	915	63904											
ZFAND3	60685	broad.mit.edu	37	chr6	38084406	38084406	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacgactacttgagaatacGgaacggtccgaggaaaccag	11	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38084406	A	A	38084406	2	1	57	1	0	0	0	0	0	0	0	1	17755	1103	39	4		4	ZFAND3	6	38084406	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	653495	38084406	133030661	916	63905											
DNAH8	1769	broad.mit.edu	37	chr6	38746218	38746218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaatcttatcttctcagCaggctcttcagctacttcaa	6	11	6	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38746218	A	A	38746218	3	1	57	1	0	0	0	0	1	0	0	0	4647	711	25	3	1404	3	DNAH8	6	38746218	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	661812	38746218	132368849	917	63906											
DNAH8	1769	broad.mit.edu	37	chr6	38906524	38906524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgaacttgaaagtttttTaaaaaaagaaattgcccttt	5	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38906524	A	A	38906524	1	1	57	0	1	0	0	0	0	0	0	0	4647	1769	61	5		5	DNAH8	6	38906524	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	160306	38906524	132208543	918	63907											
KIF6	221458	broad.mit.edu	37	chr6	39581216	39581216	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttataaaagcaaataacAcacaagataccagacagcac	4	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39581216	T	T	39581216	1	4	57	0	1	0	0	0	0	0	0	0	8378	174	6	5		5	KIF6	6	39581216	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	674692	39581216	131533851	919	63908											
LRFN2	57497	broad.mit.edu	37	chr6	40359729	40359729	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgccaaaagtcccccGggcccccaccaggtcactct	10	18	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40359729	A	A	40359729	3	1	57	1	0	0	0	0	1	0	0	0	9025	1115	39	4	50	4	LRFN2	6	40359729	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	778513	40359729	130755338	920	63909											
LRFN2	57497	broad.mit.edu	37	chr6	40400140	40400140	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgggttacccccaaaaCtaaaggacaagggtggggca	14	8	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40400140	G	G	40400140	3	3	57	1	0	0	0	0	1	0	0	0	9025	565	20	4	1664	4	LRFN2	6	40400140	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	40411	40400140	130714927	921	63910											
NCR2	9436	broad.mit.edu	37	chr6	41318241	41318241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgggctcaaaatccatGcatgctcactgacacttttc	6	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41318241	T	T	41318241	1	4	57	0	1	0	0	0	0	0	0	0	10333	1334	46	3		3	NCR2	6	41318241	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	918101	41318241	129796826	922	63911											
KLHDC3	116138	broad.mit.edu	37	chr6	42986735	42986735	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggagagagggaaggggctCagggaagtcactaatgggag	19	4	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42986735	G	G	42986735	1	3	57	0	1	0	0	0	0	0	0	0	8428	841	29	4		4	KLHDC3	6	42986735	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1668494	42986735	128128332	923	63912											
CUL7	9820	broad.mit.edu	37	chr6	43017638	43017638	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctgagccttccaaatgctCtatacagtccagcccttgca	6	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43017638	G	G	43017638	1	3	57	0	1	0	0	0	0	0	0	0	4093	928	32	4		4	CUL7	6	43017638	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	30903	43017638	128097429	924	63913											
CUL7	9820	broad.mit.edu	37	chr6	43019092	43019092	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctctccccactcaactcctCaggagcagaggtgttctggg	10	15	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43019092	T	T	43019092	3	4	57	1	0	0	0	0	1	0	0	0	4093	835	29	4	4341	4	CUL7	6	43019092	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1454	43019092	128095975	925	63914											
CUL9	23113	broad.mit.edu	37	chr6	43190077	43190077	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaaggcagctcgccaggaGaagcggtttcaggactataa	13	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43190077	C	C	43190077	3	2	57	1	0	0	0	0	1	0	0	0	4094	933	33	4	7008	4	CUL9	6	43190077	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	170985	43190077	127924990	926	63915											
AARS2	57505	broad.mit.edu	37	chr6	44279795	44279795	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcttggctgatcactgatCcccagagactcaccttaaaa	6	13	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44279795	A	A	44279795	1	1	57	0	1	0	0	0	0	0	0	0	20	870	30	3		3	AARS2	6	44279795	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1089718	44279795	126835272	927	63916											
CDC5L	988	broad.mit.edu	37	chr6	44360513	44360513	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcagtggaggaccattgctCcaatcattggaagaacagcg	11	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44360513	G	G	44360513	3	3	57	1	0	0	0	0	1	0	0	0	3112	855	30	4	269	4	CDC5L	6	44360513	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	80718	44360513	126754554	928	63917											
CDC5L	988	broad.mit.edu	37	chr6	44394624	44394624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgttatgaaaaggacatGctttaaatacctccatcccc	6	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44394624	T	T	44394624	1	4	57	0	1	0	0	0	0	0	0	0	3112	1334	46	3		3	CDC5L	6	44394624	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	34111	44394624	126720443	929	63918											
SUPT3H	8464	broad.mit.edu	37	chr6	45021739	45021739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgagctcgcctataccCagagagagggaatgaaggca	14	9	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45021739	A	A	45021739	1	1	57	0	1	0	0	0	0	0	0	0	15515	609	21	2		2	SUPT3H	6	45021739	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	627115	45021739	126093328	930	63919											
RCAN2	10231	broad.mit.edu	37	chr6	46214582	46214582	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtggggaggaagggggCgagatgagaaactgtttggc	20	4	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46214582	A	A	46214582	2	1	57	1	0	0	0	0	0	0	0	1	13277	755	27	3		3	RCAN2	6	46214582	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1192843	46214582	124900485	931	63920											
TDRD6	221400	broad.mit.edu	37	chr6	46659518	46659518	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatataaacctcagatcaActcatcatacaaggaactca	4	11	6	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46659518	T	T	46659518	3	4	57	1	0	0	0	0	1	0	0	0	15856	43	2	5	3655	5	TDRD6	6	46659518	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	444936	46659518	124455549	932	63921											
GPR110	266977	broad.mit.edu	37	chr6	46988587	46988587	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtacttcagaaagacatttGagcaaaaattgatacagaca	7	7	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46988587	C	C	46988587	1	2	57	0	1	0	0	0	0	0	0	0	6692	1305	45	4		4	GPR110	6	46988587	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	329069	46988587	124126480	933	63922											
C6orf138	442213	broad.mit.edu	37	chr6	47846857	47846857	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaaaatgagctttgcaGgacactgatgaagtcacttt	8	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47846857	A	A	47846857	2	1	57	1	0	0	0	0	0	0	0	1	2355	991	35	4		4	C6orf138	6	47846857	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	858270	47846857	123268210	934	63923											
RHAG	6005	broad.mit.edu	37	chr6	49574638	49574638	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactttagaattaaacctgTgacggtagagggaaaatgag	11	5	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49574638	A	A	49574638	1	1	57	0	1	0	0	0	0	0	0	0	13424	1711	59	5		5	RHAG	6	49574638	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1727781	49574638	121540429	935	63924											
PGK2	5232	broad.mit.edu	37	chr6	49754364	49754364	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgctttatggggcagattCactcccaccatggaactatg	10	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49754364	T	T	49754364	2	4	57	1	0	0	0	0	0	0	0	1	11886	813	29	4		4	PGK2	6	49754364	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	179726	49754364	121360703	936	63925											
TFAP2B	7021	broad.mit.edu	37	chr6	50805702	50805703	+	Frame_Shift_Ins	INS	-	T	T													ttcagagccaaatcgaaaaaINStggggggagatctttgcgag					rs143212621		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50805703	T	T	50805702	7	5	57	1	0	1	1	0	0	0	0	0	15911	101	4	0	854	0	TFAP2B	6	50805702	Frame_Shift_Ins	INS	-	TCGA-17-Z026-01A-01W-0746-08	1051338	50805702	120309365	937	63926											
PKHD1	5314	broad.mit.edu	37	chr6	51483815	51483815	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagtcctcacttccccaGcttattatccagaaatactg	6	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51483815	T	T	51483815	1	4	57	0	1	0	0	0	0	0	0	0	12066	986	34	3		3	PKHD1	6	51483815	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	678113	51483815	119631252	938	63927											
PKHD1	5314	broad.mit.edu	37	chr6	51484224	51484224	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagcagcctcttcctctcgGacaatgtggcggctaacttt	9	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51484224	T	T	51484224	2	4	57	1	0	0	0	0	0	0	0	1	12066	1161	41	3		3	PKHD1	6	51484224	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	409	51484224	119630843	939	63928											
PKHD1	5314	broad.mit.edu	37	chr6	51881204	51881204	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcactttgggagaccaagtCgggtggattgcttgagctca	14	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51881204	A	A	51881204	1	1	57	0	1	0	0	0	0	0	0	0	12066	899	31	3		3	PKHD1	6	51881204	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	396980	51881204	119233863	940	63929											
IL17F	112744	broad.mit.edu	37	chr6	52109151	52109151	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattctgttttctgaaatcCtaggcatgacagtccttaaa	8	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52109151	T	T	52109151	1	4	57	0	1	0	0	0	0	0	0	0	7708	696	24	4		4	IL17F	6	52109151	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	227947	52109151	119005916	941	63930											
GCM1	8521	broad.mit.edu	37	chr6	52993488	52993488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaggaagcaggtctccaCtactgtaggttctgctactg	12	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52993488	A	A	52993488	3	1	57	1	0	0	0	0	1	0	0	0	6359	565	20	3	487	3	GCM1	6	52993488	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	884337	52993488	118121579	942	63931											
ELOVL5	60481	broad.mit.edu	37	chr6	53191751	53191752	+	Intron	DEL	TG	-	-													ttgcttgcaactttagaaacTgtgtgtccaccactagtgca							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53191752	-	-	53191751	6	5	57	0	1	1	0	1	0	0	0	0	5119	1595	55	0		0	ELOVL5	6	53191751	Intron	DEL	TG	TCGA-17-Z026-01A-01W-0746-08	198263	53191751	117923316	943	63932											
GCLC	2729	broad.mit.edu	37	chr6	53370698	53370698	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtggactgaatattctgtGatacaaaagcagagaagaaa	10	4	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53370698	A	A	53370698	1	1	57	0	1	0	0	0	0	0	0	0	6357	1305	45	4		4	GCLC	6	53370698	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	178947	53370698	117744369	944	63933											
TINAG	27283	broad.mit.edu	37	chr6	54173469	54173469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcactaggaatcacaccGttttgcaaggtactcgattc	7	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54173469	T	T	54173469	3	4	57	1	0	0	0	0	1	0	0	0	16044	1145	40	3	123	3	TINAG	6	54173469	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	802771	54173469	116941598	945	63934											
GFRAL	389400	broad.mit.edu	37	chr6	55216120	55216120	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtggtctgtaatgcacAgttggcctcttaccttaaag	11	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55216120	T	T	55216120	3	4	57	1	0	0	0	0	1	0	0	0	6415	188	7	5	458	5	GFRAL	6	55216120	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1042651	55216120	115898947	946	63935											
HMGCLL1	54511	broad.mit.edu	37	chr6	55364115	55364115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctaaattaaaaatacagCcttataaatatgcatatggt	4	6	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55364115	A	A	55364115	1	1	57	0	1	0	0	0	0	0	0	0	7297	754	26	3		3	HMGCLL1	6	55364115	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	147995	55364115	115750952	947	63936											
COL21A1	81578	broad.mit.edu	37	chr6	56141285	56141285	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatacttttttcagagagaGggggaacaacttaaaataaa	8	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56141285	A	A	56141285	1	1	57	0	1	0	0	0	0	0	0	0	3712	1015	35	4		4	COL21A1	6	56141285	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	777170	56141285	114973782	948	63937											
DST	667	broad.mit.edu	37	chr6	56473023	56473023	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattttttaaaattgatgCtgtgttgttgtctataattc	6	3	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56473023	A	A	56473023	1	1	57	0	1	0	0	0	0	0	0	0	4823	812	28	3		3	DST	6	56473023	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	331738	56473023	114642044	949	63938											
PRIM2	5558	broad.mit.edu	37	chr6	57431368	57431368	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccatctcctaatttagaaTgtggattccttaaatttttt	6	7	1	1	rs146918132	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57431368	G	G	57431368	1	3	57	0	1	0	0	0	0	0	0	0	12597	1479	51	5		5	PRIM2	6	57431368	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	958345	57431368	113683699	950	63939											
PRIM2	5558	broad.mit.edu	37	chr6	57484091	57484091	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacatggcttcctccctGtatgtcttctcaccatcttt	5	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57484091	A	A	57484091	1	1	57	0	1	0	0	0	0	0	0	0	12597	1392	48	4		4	PRIM2	6	57484091	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	52723	57484091	113630976	951	63940											
PRIM2	5558	broad.mit.edu	37	chr6	57487235	57487235	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatttctcagcagaaaccCtacaagctagaagggattag	9	9	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57487235	G	G	57487235	1	3	57	0	1	0	0	0	0	0	0	0	12597	696	24	4		4	PRIM2	6	57487235	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3144	57487235	113627832	952	63941											
KHDRBS2	202559	broad.mit.edu	37	chr6	62604682	62604682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttacagtgcttccccgaGgggtgagaacacctcgtcca	13	12	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62604682	T	T	62604682	3	4	57	1	0	0	0	0	1	0	0	0	8217	1000	35	2	397	2	KHDRBS2	6	62604682	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5117447	62604682	108510385	953	63942											
BAI3	577	broad.mit.edu	37	chr6	69758008	69758008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatatactgcaagatttacCttgatcaacactgattacac	5	9	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69758008	A	A	69758008	1	1	57	0	1	0	0	0	0	0	0	0	1305	696	24	2		2	BAI3	6	69758008	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7153326	69758008	101357059	954	63943											
COL19A1	1310	broad.mit.edu	37	chr6	70745820	70745820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaggacccccaggaccaCcagccttacctgtaagtatt	7	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70745820	A	A	70745820	3	1	57	1	0	0	0	0	1	0	0	0	3708	507	18	3	1209	3	COL19A1	6	70745820	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	987812	70745820	100369247	955	63944											
COL19A1	1310	broad.mit.edu	37	chr6	70866084	70866084	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaggagaagaaggaggTgctggtgagcctggaaagta	16	4	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70866084	A	A	70866084	2	1	57	1	0	0	0	0	0	0	0	1	3708	1683	59	5		5	COL19A1	6	70866084	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	120264	70866084	100248983	956	63945											
RIMS1	22999	broad.mit.edu	37	chr6	72960917	72960917	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttgagaattaccctctcaGatcctcatagaattggagac	7	9	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72960917	T	T	72960917	5	4	57	1	0	0	0	0	0	0	1	0	13478	956	33	3	2765	3	RIMS1	6	72960917	Splice_Site	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2094833	72960917	98154150	957	63946											
RIMS1	22999	broad.mit.edu	37	chr6	73110206	73110206	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatctctgcaggtgattgtCtggggagactatggcagaat	13	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73110206	T	T	73110206	2	4	57	1	0	0	0	0	0	0	0	1	13478	900	32	4		4	RIMS1	6	73110206	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	149289	73110206	98004861	958	63947											
COL12A1	1303	broad.mit.edu	37	chr6	75855730	75855730	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtacgtaaagttataaatGagtttgtaagtaactgcagt	9	3	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75855730	A	A	75855730	1	1	57	0	1	0	0	0	0	0	0	0	3701	1305	45	4		4	COL12A1	6	75855730	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2745524	75855730	95259337	959	63948											
COL12A1	1303	broad.mit.edu	37	chr6	75860867	75860867	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaacttacctggacctttGacactgttacacaaattaat	4	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75860867	C	C	75860867	2	2	57	1	0	0	0	0	0	0	0	1	3701	1277	45	4		4	COL12A1	6	75860867	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5137	75860867	95254200	960	63949											
IMPG1	3617	broad.mit.edu	37	chr6	76715146	76715146	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgatagacttcctcactTtcaattttgttggaatcaaa	5	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76715146	A	A	76715146	3	1	57	1	0	0	0	0	1	0	0	0	7798	1838	64	5	1432	5	IMPG1	6	76715146	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	854279	76715146	94399921	961	63950											
IMPG1	3617	broad.mit.edu	37	chr6	76731841	76731841	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaacttcttactgttgtagGcatcttggtgtcgttgagtg	13	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76731841	C	C	76731841	3	2	57	1	0	0	0	0	1	0	0	0	7798	1203	42	4	1783	4	IMPG1	6	76731841	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	16695	76731841	94383226	962	63951											
PHIP	55023	broad.mit.edu	37	chr6	79707403	79707403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagataaaacactatcttcCataagaaacttcatattgtg	5	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79707403	A	A	79707403	1	1	57	0	1	0	0	0	0	0	0	0	11937	609	21	2		2	PHIP	6	79707403	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2975562	79707403	91407664	963	63952											
FAM46A	55603	broad.mit.edu	37	chr6	82459798	82459798	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctggaacacatatacctttGaagggtcttgatttcatcag	8	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82459798	C	C	82459798	3	2	57	1	0	0	0	0	1	0	0	0	5616	1299	45	4	389	4	FAM46A	6	82459798	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2752395	82459798	88655269	964	63953											
RIPPLY2	134701	broad.mit.edu	37	chr6	84563838	84563838	+	Frame_Shift_Del	DEL	C	-	-													gcccgatggccctggaatgaCcgcagcctcaggaaagcttt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84563838	-	-	84563838	7	5	57	1	0	1	0	1	0	0	0	0	13496	507	18	0	207	0	RIPPLY2	6	84563838	Frame_Shift_Del	DEL	C	TCGA-17-Z026-01A-01W-0746-08	2104040	84563838	86551229	965	63954											
KIAA1009	22832	broad.mit.edu	37	chr6	84865201	84865201	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaaagaattgggatatcttCtcttcagaatcccttccatt	6	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84865201	G	G	84865201	3	3	57	1	0	0	0	0	1	0	0	0	8273	913	32	4	1425	4	KIAA1009	6	84865201	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	301363	84865201	86249866	966	63955											
HTR1E	3354	broad.mit.edu	37	chr6	87725673	87725673	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctattaccggatttaccaCgcggccaagagcctttacca	7	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87725673	T	T	87725673	2	4	57	1	0	0	0	0	0	0	0	1	7509	535	19	4		4	HTR1E	6	87725673	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2860472	87725673	83389394	967	63956											
RRAGD	58528	broad.mit.edu	37	chr6	90077751	90077751	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatggataaggtctgatttCaaaagacattcctgaaacct	7	8	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90077751	G	G	90077751	1	3	57	0	1	0	0	0	0	0	0	0	13786	841	29	4		4	RRAGD	6	90077751	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2352078	90077751	81037316	968	63957											
RRAGD	58528	broad.mit.edu	37	chr6	90077868	90077868	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gattttactactttcattctCacctcaaaaacttcatgaat	2	10	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90077868	G	G	90077868	2	3	57	1	0	0	0	0	0	0	0	1	13786	813	29	4		4	RRAGD	6	90077868	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	117	90077868	81037199	969	63958											
RRAGD	58528	broad.mit.edu	37	chr6	90087611	90087611	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actacacaaaattgaatgccAttcttaatgtaaaatacaaa	3	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90087611	T	T	90087611	1	4	57	0	1	0	0	0	0	0	0	0	13786	232	8	5		5	RRAGD	6	90087611	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	9743	90087611	81027456	970	63959											
ANKRD6	22881	broad.mit.edu	37	chr6	90327653	90327653	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtggccctttctcacctgtCctactctgcctctcctcagg	7	18	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90327653	T	T	90327653	1	4	57	0	1	0	0	0	0	0	0	0	685	870	30	4		4	ANKRD6	6	90327653	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	240042	90327653	80787414	971	63960											
MDN1	23195	broad.mit.edu	37	chr6	90398396	90398396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtgcttctggaacattggGatgctggtagaagtcatagg	14	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90398396	T	T	90398396	3	4	57	1	0	0	0	0	1	0	0	0	9508	1174	41	3	5783	3	MDN1	6	90398396	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	70743	90398396	80716671	972	63961											
MCHR2	84539	broad.mit.edu	37	chr6	100395739	100395739	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccccccaaacacccactcTccccctcgggcccattggtg	8	21	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100395739	A	A	100395739	2	1	57	1	0	0	0	0	0	0	0	1	9476	1538	54	5		5	MCHR2	6	100395739	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	9997343	100395739	70719328	973	63962											
GRIK2	2898	broad.mit.edu	37	chr6	101878726	101878726	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatagcacagcttctccttGatgtcgcgcactatctccca	7	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101878726	T	T	101878726	1	4	57	0	1	0	0	0	0	0	0	0	6840	1305	45	3		3	GRIK2	6	101878726	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1482987	101878726	69236341	974	63963											
QRSL1	55278	broad.mit.edu	37	chr6	107088379	107088379	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatcagaaaagagatataaGaatggtaaattgcttttaac	8	3	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107088379	C	C	107088379	3	2	57	1	0	0	0	0	1	0	0	0	12989	933	33	4	186	4	QRSL1	6	107088379	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5209653	107088379	64026688	975	63964											
QRSL1	55278	broad.mit.edu	37	chr6	107110970	107110970	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taactcccaccaccttgagtGaggcagtaccatacttggag	9	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107110970	A	A	107110970	3	1	57	1	0	0	0	0	1	0	0	0	12989	1291	45	4	1314	4	QRSL1	6	107110970	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	22591	107110970	64004097	976	63965											
NR2E1	7101	broad.mit.edu	37	chr6	108508707	108508707	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaggatgggacagtatcaGatgaacttcaacccatggag	11	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108508707	A	A	108508707	1	1	57	0	1	0	0	0	0	0	0	0	10720	957	33	4		4	NR2E1	6	108508707	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1397737	108508707	62606360	977	63966											
FOXO3	2309	broad.mit.edu	37	chr6	108882901	108882901	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggaaacctgtcctacgcgGacctgatcacccgcgccatc	11	16	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108882901	A	A	108882901	3	1	57	1	0	0	0	0	1	0	0	0	6084	1174	41	4	492	4	FOXO3	6	108882901	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	374194	108882901	62232166	978	63967											
GPR6	2830	broad.mit.edu	37	chr6	110301280	110301280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgcccgccacctacaactCcatgatcaatcccatcatct	4	18	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110301280	A	A	110301280	3	1	57	1	0	0	0	0	1	0	0	0	6766	855	30	3	967	3	GPR6	6	110301280	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1418379	110301280	60813787	979	63968											
WASF1	8936	broad.mit.edu	37	chr6	110428333	110428333	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtatcttgcaacattttttCtttccatagatcaaagaaat	4	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110428333	G	G	110428333	3	3	57	1	0	0	0	0	1	0	0	0	17379	922	32	4	1212	4	WASF1	6	110428333	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	127053	110428333	60686734	980	63969											
CDK19	23097	broad.mit.edu	37	chr6	110988772	110988772	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcacggtgaaacttaatAatatgctaaaaattaaaaaa	6	4	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110988772	G	G	110988772	2	3	57	1	0	0	0	0	0	0	0	1	3165	358	13	5		5	CDK19	6	110988772	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	560439	110988772	60126295	981	63970											
KIAA1919	91749	broad.mit.edu	37	chr6	111585261	111585261	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaatgacacagacctactGagttggttgtgagtcactca	9	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111585261	T	T	111585261	1	4	57	0	1	0	0	0	0	0	0	0	8332	1305	45	3		3	KIAA1919	6	111585261	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	596489	111585261	59529806	982	63971											
FRK	2444	broad.mit.edu	37	chr6	116366242	116366242	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accactgctcaaggaaataaGagaggacacaaacaaatgga	9	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116366242	C	C	116366242	1	2	57	0	1	0	0	0	0	0	0	0	6108	957	33	4		4	FRK	6	116366242	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4780981	116366242	54748825	983	63972											
C6orf204	387119	broad.mit.edu	37	chr6	118823181	118823181	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaacagtcagtgggaatttGaaagaagaaaaccagatgga	11	4	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118823181	C	C	118823181	1	2	57	0	1	0	0	0	0	0	0	0	2376	1305	45	4		4	C6orf204	6	118823181	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2456939	118823181	52291886	984	63973											
MAN1A1	4121	broad.mit.edu	37	chr6	119509842	119509842	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacagtcatccctcagtatCtatgagggactggttccagg	11	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119509842	G	G	119509842	1	3	57	0	1	0	0	0	0	0	0	0	9302	928	32	4		4	MAN1A1	6	119509842	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	686661	119509842	51605225	985	63974											
CLVS2	134829	broad.mit.edu	37	chr6	123375001	123375001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaaatacaaccgagtagGggagagaggacgaattctag	13	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123375001	T	T	123375001	1	4	57	0	1	0	0	0	0	0	0	0	3604	1247	43	2		2	CLVS2	6	123375001	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3865159	123375001	47740066	986	63975											
TRMT11	60487	broad.mit.edu	37	chr6	126329797	126329797	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctccacttcctcttcctCctcagcctgctcaacatgaa	3	19	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126329797	A	A	126329797	1	1	57	0	1	0	0	0	0	0	0	0	16687	870	30	3		3	TRMT11	6	126329797	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2954796	126329797	44785270	987	63976											
ECHDC1	55862	broad.mit.edu	37	chr6	127636043	127636043	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacttattaaaggaagtcTgtatattgaagaaaaaactg	7	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127636043	C	C	127636043	5	2	57	1	0	0	0	0	0	0	1	0	4933	1594	55	5	498	5	ECHDC1	6	127636043	Splice_Site	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1306246	127636043	43479024	988	63977											
PTPRK	5796	broad.mit.edu	37	chr6	128312056	128312056	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaaaagaatatatagaCagacctgaatatataatact	5	5	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128312056	G	G	128312056	1	3	57	0	1	0	0	0	0	0	0	0	12913	493	17	4		4	PTPRK	6	128312056	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	676013	128312056	42803011	989	63978											
LAMA2	3908	broad.mit.edu	37	chr6	129571161	129571161	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtcttgcaaatactgccCtatagaacaataaaattcgt	6	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129571161	G	G	129571161	1	3	57	0	1	0	0	0	0	0	0	0	8678	696	24	4		4	LAMA2	6	129571161	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1259105	129571161	41543906	990	63979											
L3MBTL3	84456	broad.mit.edu	37	chr6	130373906	130373906	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaagatttttcctttgcagGgtgatttttttttaatgatt	7	3	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130373906	A	A	130373906	1	1	57	0	1	0	0	0	0	0	0	0	8665	1247	43	4		4	L3MBTL3	6	130373906	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	802745	130373906	40741161	991	63980											
L3MBTL3	84456	broad.mit.edu	37	chr6	130413887	130413887	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttaatgtccttgtgtcatcCaggttcactttgatggctgg	11	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130413887	G	G	130413887	1	3	57	0	1	0	0	0	0	0	0	0	8665	609	21	4		4	L3MBTL3	6	130413887	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	39981	130413887	40701180	992	63981											
CTGF	1490	broad.mit.edu	37	chr6	132271100	132271100	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacatgtaccttaatgttctCttccaggtcagcttcgcaag	7	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132271100	T	T	132271100	3	4	57	1	0	0	0	0	1	0	0	0	4042	922	32	4	315	4	CTGF	6	132271100	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1857213	132271100	38843967	993	63982											
CTGF	1490	broad.mit.edu	37	chr6	132271222	132271222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtcttggaacaggcgCtccactctgtggtctggacc	12	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132271222	A	A	132271222	3	1	57	1	0	0	0	0	1	0	0	0	4042	797	28	3	437	3	CTGF	6	132271222	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	122	132271222	38843845	994	63983											
C6orf192	116843	broad.mit.edu	37	chr6	133118163	133118163	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatagaatagcacatcatGgaacctaagttcaccgaagc	8	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133118163	A	A	133118163	2	1	57	1	0	0	0	0	0	0	0	1	2372	1335	47	4		4	C6orf192	6	133118163	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	846941	133118163	37996904	995	63984											
EYA4	2070	broad.mit.edu	37	chr6	133804194	133804194	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtttgtctgggatttggatGaaaccatcattgtttttcac	9	6	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133804194	A	A	133804194	3	1	57	1	0	0	0	0	1	0	0	0	5374	1291	45	4	1178	4	EYA4	6	133804194	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	686031	133804194	37310873	996	63985											
TCF21	6943	broad.mit.edu	37	chr6	134210430	134210430	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtggctgcgccacactcggGaggcctcttggtttcagggt	16	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134210430	A	A	134210430	1	1	57	0	1	0	0	0	0	0	0	0	15813	1189	41	4		4	TCF21	6	134210430	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	406236	134210430	36904637	997	63986											
TCF21	6943	broad.mit.edu	37	chr6	134210519	134210519	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctctctctctctctccctCgtccactcccccaaacatgt	2	21	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134210519	G	G	134210519	1	3	57	0	1	0	0	0	0	0	0	0	15813	899	31	4		4	TCF21	6	134210519	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	89	134210519	36904548	998	63987											
SGK1	6446	broad.mit.edu	37	chr6	134495930	134495930	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagggtgcccttagcagcctCagttttcaccgtcatcacca	9	14	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134495930	T	T	134495930	3	4	57	1	0	0	0	0	1	0	0	0	14320	835	29	4	1327	4	SGK1	6	134495930	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	285411	134495930	36619137	999	63988											
ALDH8A1	64577	broad.mit.edu	37	chr6	135239743	135239743	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggacgcgccccacattgctgGaccacacggtagccgccagc	12	17	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135239743	A	A	135239743	3	1	57	1	0	0	0	0	1	0	0	0	505	1174	41	4	193	4	ALDH8A1	6	135239743	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	743813	135239743	35875324	1000	63989											
PDE7B	27115	broad.mit.edu	37	chr6	136468561	136468561	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctttcaaagatacttccAtgcatcaaggctgcttcgtg	8	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136468561	G	G	136468561	3	3	57	1	0	0	0	0	1	0	0	0	11746	217	8	5	253	5	PDE7B	6	136468561	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1228818	136468561	34646506	1001	63990											
MAP3K5	4217	broad.mit.edu	37	chr6	137112905	137112905	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcgagtttcccaaaatGcagggtttccagggtggcgc	13	9	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137112905	A	A	137112905	3	1	57	1	0	0	0	0	1	0	0	0	9345	1319	46	4	3853	4	MAP3K5	6	137112905	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	644344	137112905	34002162	1002	63991											
ECT2L	345930	broad.mit.edu	37	chr6	139165414	139165414	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaatccaaaccgagtgCatgaaaatggctgtaattat	9	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139165414	T	T	139165414	1	4	57	0	1	0	0	0	0	0	0	0	4942	725	25	4		4	ECT2L	6	139165414	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2052509	139165414	31949653	1003	63992											
REPS1	85021	broad.mit.edu	37	chr6	139238640	139238640	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctaaatagttttaaacaTtaaaacgcagcaagatagtt	6	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139238640	A	A	139238640	1	1	57	0	1	0	0	0	0	0	0	0	13336	1508	52	5		5	REPS1	6	139238640	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	73226	139238640	31876427	1004	63993											
TXLNB	167838	broad.mit.edu	37	chr6	139568923	139568923	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgtcaaaatagaaaatgtCaatattttgttggtgataag	8	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139568923	G	G	139568923	1	3	57	0	1	0	0	0	0	0	0	0	16914	841	29	4		4	TXLNB	6	139568923	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	330283	139568923	31546144	1005	63994											
AIG1	51390	broad.mit.edu	37	chr6	143654710	143654710	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggatctcctataaagagctCcatttttaaaactacaatat	4	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143654710	A	A	143654710	1	1	57	0	1	0	0	0	0	0	0	0	429	870	30	3		3	AIG1	6	143654710	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4085787	143654710	27460357	1006	63995											
GRM1	2911	broad.mit.edu	37	chr6	146719982	146719982	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcgccttttcatgcctgGgaatccttgttaccttgttt	7	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146719982	A	A	146719982	3	1	57	1	0	0	0	0	1	0	0	0	6862	1233	43	4	1833	4	GRM1	6	146719982	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3065272	146719982	24395085	1007	63996											
TAB2	23118	broad.mit.edu	37	chr6	149700305	149700305	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactctggagcatctgctgcCtccaggaacatgtctgggca	11	12	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149700305	T	T	149700305	2	4	57	1	0	0	0	0	0	0	0	1	15615	668	24	4		4	TAB2	6	149700305	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2980323	149700305	21414762	1008	63997											
AKAP12	9590	broad.mit.edu	37	chr6	151670260	151670260	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccgaagagaccctgaagcGtgagcaaagccacgcagaaa	11	12	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151670260	A	A	151670260	3	1	57	1	0	0	0	0	1	0	0	0	448	1145	40	4	773	4	AKAP12	6	151670260	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1969955	151670260	19444807	1009	63998											
C6orf211	79624	broad.mit.edu	37	chr6	151779592	151779592	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atatatggaatcagtacctaGaatatcaacagagtctttta	6	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151779592	A	A	151779592	3	1	57	1	0	0	0	0	1	0	0	0	2377	943	33	4	287	4	C6orf211	6	151779592	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	109332	151779592	19335475	1010	63999											
SYNE1	23345	broad.mit.edu	37	chr6	152590421	152590421	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccttctcctgtgctgttcCctgcttttaacgaggcagaa	8	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152590421	G	G	152590421	3	3	57	1	0	0	0	0	1	0	0	0	15564	637	22	4	8084	4	SYNE1	6	152590421	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	810829	152590421	18524646	1011	64000											
IPCEF1	26034	broad.mit.edu	37	chr6	154568616	154568616	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgggcttctgacgcaaggGaacctgctgaaaatgcagga	13	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154568616	A	A	154568616	3	1	57	1	0	0	0	0	1	0	0	0	7861	1174	41	4	1309	4	IPCEF1	6	154568616	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1978195	154568616	16546451	1012	64001											
TULP4	56995	broad.mit.edu	37	chr6	158910770	158910770	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccaaactcccaaggtaatCtcagtctttggggagatcgt	9	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158910770	T	T	158910770	1	4	57	0	1	0	0	0	0	0	0	0	16902	928	32	4		4	TULP4	6	158910770	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4342154	158910770	12204297	1013	64002											
LPA	4018	broad.mit.edu	37	chr6	160969738	160969739	+	Intron	DEL	CA	-	-													acaggaggcggaagaatattCagggacatccagcaccctct					rs10755578	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160969739	-	-	160969738	6	5	57	0	1	1	0	1	0	0	0	0	8990	841	29	0		0	LPA	6	160969738	Intron	DEL	CA	TCGA-17-Z026-01A-01W-0746-08	2058968	160969738	10145329	1014	64003											
LPA	4018	broad.mit.edu	37	chr6	161011992	161011992	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttgttcagaaacagcCgtggacgtcgcaaggacact	10	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161011992	A	A	161011992	2	1	57	1	0	0	0	0	0	0	0	1	8990	639	23	1		1	LPA	6	161011992	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	42254	161011992	10103075	1015	64004											
QKI	9444	broad.mit.edu	37	chr6	163876581	163876581	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtcatcaactgaagtgtGaataatttggcatgataatt	9	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163876581	T	T	163876581	1	4	57	0	1	0	0	0	0	0	0	0	12981	1305	45	3		3	QKI	6	163876581	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2864589	163876581	7238486	1016	64005											
RPS6KA2	6196	broad.mit.edu	37	chr6	166923836	166923836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctccatcttcgatctcactCggtcccgaactgcaaagtaa	6	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166923836	A	A	166923836	3	1	57	1	0	0	0	0	1	0	0	0	13762	884	31	3	1965	3	RPS6KA2	6	166923836	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3047255	166923836	4191231	1017	64006											
FGFR1OP	11116	broad.mit.edu	37	chr6	167446089	167446089	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcttttcttaaacttatcAggaactggagaagatgatga	8	5	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167446089	T	T	167446089	5	4	57	1	0	0	0	0	0	0	1	0	5921	202	7	5	1029	5	FGFR1OP	6	167446089	Splice_Site	SNP	A	TCGA-17-Z026-01A-01W-0746-08	522253	167446089	3668978	1018	64007											
CCR6	1235	broad.mit.edu	37	chr6	167550021	167550021	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgttcttactctcccattCtgggcagtgagtcatgccac	8	12	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167550021	G	G	167550021	3	3	57	1	0	0	0	0	1	0	0	0	2975	912	32	4	309	4	CCR6	6	167550021	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	103932	167550021	3565046	1019	64008											
GPR31	2853	broad.mit.edu	37	chr6	167570897	167570897	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggcaggtgagggcgaccatCaggagccagacgaggcccga	18	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167570897	G	G	167570897	2	3	57	1	0	0	0	0	0	0	0	1	6752	813	29	4		4	GPR31	6	167570897	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	20876	167570897	3544170	1020	64009											
THBS2	7058	broad.mit.edu	37	chr6	169629765	169629765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagaatttggcagatgggGgcagttatcctgcaattgga	13	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169629765	T	T	169629765	3	4	57	1	0	0	0	0	1	0	0	0	15977	1232	43	2	1393	2	THBS2	6	169629765	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2058868	169629765	1485302	1021	64010											
THBS2	7058	broad.mit.edu	37	chr6	169632128	169632128	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccagattgaggttgggccAgccgtccaggtccgagtcct	14	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169632128	T	T	169632128	3	4	57	1	0	0	0	0	1	0	0	0	15977	188	7	5	1460	5	THBS2	6	169632128	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2363	169632128	1482939	1022	64011											
ZFAND2A	90637	broad.mit.edu	37	chr7	1192685	1192685	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctactgcgtgctccgagcCatcgcagcggagtctcttct	11	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1192685	A	A	1192685	1	1	57	0	1	0	0	0	0	0	0	0	17753	609	21	2		2	ZFAND2A	7	1192685	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08		1192685	157945978	1023	64012											
GNA12	2768	broad.mit.edu	37	chr7	2802292	2802292	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacagagcggcaggacgatGagaggataaatcatttggaa	14	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2802292	A	A	2802292	1	1	57	0	1	0	0	0	0	0	0	0	6564	1305	45	4		4	GNA12	7	2802292	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1609607	2802292	156336371	1024	64013											
ZNF12	7559	broad.mit.edu	37	chr7	6732239	6732239	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaggaacattacctctctCttcaatcagggtctcaatga	6	12	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6732239	T	T	6732239	3	4	57	1	0	0	0	0	1	0	0	0	17844	922	32	4	1763	4	ZNF12	7	6732239	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3929947	6732239	152406424	1025	64014											
DGKB	1607	broad.mit.edu	37	chr7	14613813	14613813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatacagtacaggtacaaagGtaaaatttagtggagaatct	9	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14613813	T	T	14613813	1	4	57	0	1	0	0	0	0	0	0	0	4506	1276	44	3		3	DGKB	7	14613813	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7881574	14613813	144524850	1026	64015											
DGKB	1607	broad.mit.edu	37	chr7	14614255	14614255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatacaactgccaagtgaaCatttctactgtattccccac	4	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14614255	A	A	14614255	1	1	57	0	1	0	0	0	0	0	0	0	4506	493	17	3		3	DGKB	7	14614255	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	442	14614255	144524408	1027	64016											
HDAC9	9734	broad.mit.edu	37	chr7	18675917	18675917	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgtcccctgccagccCcccctgccctgggctgtctg	11	19	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18675917	T	T	18675917	1	4	57	0	1	0	0	0	0	0	0	0	7081	638	22	4		4	HDAC9	7	18675917	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4061662	18675917	140462746	1028	64017											
HDAC9	9734	broad.mit.edu	37	chr7	18816423	18816423	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataataagatccatactgaGggtgcaaagcagagtggtgg	13	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18816423	A	A	18816423	1	1	57	0	1	0	0	0	0	0	0	0	7081	1015	35	4		4	HDAC9	7	18816423	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	140506	18816423	140322240	1029	64018											
SP8	221833	broad.mit.edu	37	chr7	20826442	20826442	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaagtgccctcctcctctCagaggatcttttttatattg	6	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20826442	T	T	20826442	1	4	57	0	1	0	0	0	0	0	0	0	15084	841	29	4		4	SP8	7	20826442	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2010019	20826442	138312221	1030	64019											
SP8	221833	broad.mit.edu	37	chr7	20826592	20826592	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccagccaatctgcggcctCgccgggccgcgcggcgcgcg	17	18	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20826592	T	T	20826592	1	4	57	0	1	0	0	0	0	0	0	0	15084	899	31	4		4	SP8	7	20826592	5'Flank	SNP	C	TCGA-17-Z026-01A-01W-0746-08	150	20826592	138312071	1031	64020											
STK31	56164	broad.mit.edu	37	chr7	23811831	23811831	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcacttgctatccattaaGaagacattgaaaagcttaaa	6	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23811831	A	A	23811831	2	1	57	1	0	0	0	0	0	0	0	1	15414	933	33	4		4	STK31	7	23811831	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2985239	23811831	135326832	1032	64021											
OSBPL3	26031	broad.mit.edu	37	chr7	24874013	24874013	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatcaaaatgaaaccggaggGaacaggggctgtctctctga	12	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24874013	A	A	24874013	1	1	57	0	1	0	0	0	0	0	0	0	11373	1189	41	4		4	OSBPL3	7	24874013	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1062182	24874013	134264650	1033	64022											
OSBPL3	26031	broad.mit.edu	37	chr7	24901333	24901333	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttctccaaaatctagtgttGacaaattaggattggaggag	10	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24901333	T	T	24901333	4	4	57	1	0	0	0	0	0	1	0	0	11373	1294	45	3	1793	3	OSBPL3	7	24901333	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	27320	24901333	134237330	1034	64023											
CREB5	9586	broad.mit.edu	37	chr7	28849029	28849029	+	Frame_Shift_Del	DEL	C	-	-													cccagacaaacatgcagcttCaggtgcagcccacggtgtct							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28849029	-	-	28849029	7	5	57	1	0	1	0	1	0	0	0	0	3892	827	29	0	1337	0	CREB5	7	28849029	Frame_Shift_Del	DEL	C	TCGA-17-Z026-01A-01W-0746-08	3947696	28849029	130289634	1035	64024											
CHN2	1124	broad.mit.edu	37	chr7	29535656	29535656	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggggtccggtgctcaggtaGacacagaactttcttctttt	11	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29535656	A	A	29535656	1	1	57	0	1	0	0	0	0	0	0	0	3394	957	33	4		4	CHN2	7	29535656	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	686627	29535656	129603007	1036	64025											
NOD1	10392	broad.mit.edu	37	chr7	30485749	30485749	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacatacatccatccccttCtactcacccaacctcagaga	2	19	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30485749	T	T	30485749	1	4	57	0	1	0	0	0	0	0	0	0	10611	928	32	4		4	NOD1	7	30485749	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	950093	30485749	128652914	1037	64026											
INMT	11185	broad.mit.edu	37	chr7	30791745	30791745	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagacctgatagcaaggaGggggcacatttcagggacac	13	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30791745	T	T	30791745	1	4	57	0	1	0	0	0	0	0	0	0	7815	1015	35	2		2	INMT	7	30791745	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	305996	30791745	128346918	1038	64027											
FAM188B	84182	broad.mit.edu	37	chr7	30915196	30915196	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattctggggatgggaacatCacacttctcagaggcattgc	12	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30915196	T	T	30915196	2	4	57	1	0	0	0	0	0	0	0	1	5561	816	29	4		4	FAM188B	7	30915196	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	123451	30915196	128223467	1039	64028											
FAM188B	84182	broad.mit.edu	37	chr7	30931399	30931399	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgtatttgtgtttcgtaaGagactggtgtgtgggtttgt	16	2	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30931399	A	A	30931399	1	1	57	0	1	0	0	0	0	0	0	0	5561	957	33	4		4	FAM188B	7	30931399	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	16203	30931399	128207264	1040	64029											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31121485	31121485	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctctgtggctgtgtgatCtttggcaggtgacttttttt	11	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31121485	G	G	31121485	1	3	57	0	1	0	0	0	0	0	0	0	303	928	32	4		4	ADCYAP1R1	7	31121485	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	190086	31121485	128017178	1041	64030											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31126081	31126081	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcatcgagggcctgtacctCttcactctgctggtggagac	11	12	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31126081	G	G	31126081	2	3	57	1	0	0	0	0	0	0	0	1	303	900	32	4		4	ADCYAP1R1	7	31126081	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4596	31126081	128012582	1042	64031											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31126629	31126629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacacagggttagtacatgCgcgagagtcagggccacagc	14	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31126629	A	A	31126629	1	1	57	0	1	0	0	0	0	0	0	0	303	783	27	3		3	ADCYAP1R1	7	31126629	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	548	31126629	128012034	1043	64032											
PDE1C	5137	broad.mit.edu	37	chr7	31833887	31833887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagaacagttagtttagtGcaaaagtaattgcggtcttt	9	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31833887	T	T	31833887	1	4	57	0	1	0	0	0	0	0	0	0	11729	1334	46	3		3	PDE1C	7	31833887	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	707258	31833887	127304776	1044	64033											
PDE1C	5137	broad.mit.edu	37	chr7	31864460	31864461	+	Intron	DNP	CC	AA	AA													caggccaacctcaccctcagCcctcaagcttccccactgac							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31864461	AA	AA	31864460	1	1	57	0	1	0	0	0	0	0	0	0	11729	754	26	3		3	PDE1C	7	31864460	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	30573	31864460	127274203	1045	64034											
PDE1C	5137	broad.mit.edu	37	chr7	31920547	31920547	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctacaactatggtgatacaTtttacagtcatcgaatattc	5	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31920547	C	C	31920547	1	2	57	0	1	0	0	0	0	0	0	0	11729	1508	52	5		5	PDE1C	7	31920547	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	56087	31920547	127218116	1046	64035											
PDE1C	5137	broad.mit.edu	37	chr7	31981119	31981119	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaccctatcacccctactAcagttattgctgccagaatt	4	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31981119	G	G	31981119	1	3	57	0	1	0	0	0	0	0	0	0	11729	406	14	5		5	PDE1C	7	31981119	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	60572	31981119	127157544	1047	64036											
NPSR1	387129	broad.mit.edu	37	chr7	34851459	34851459	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgccatcgtctaccccatGaagttccttcaaggaggtga	9	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34851459	T	T	34851459	3	4	57	1	0	0	0	0	1	0	0	0	10695	1290	45	3	476	3	NPSR1	7	34851459	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2870340	34851459	124287204	1048	64037											
NPSR1	387129	broad.mit.edu	37	chr7	34874133	34874133	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttctccagaggttttcttCtagcaaatgtgagctaggga	11	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34874133	A	A	34874133	1	1	57	0	1	0	0	0	0	0	0	0	10695	928	32	3		3	NPSR1	7	34874133	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	22674	34874133	124264530	1049	64038											
AOAH	313	broad.mit.edu	37	chr7	36671636	36671636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggaaggtagaaattgtatAcatacaatttaattttctgg	8	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36671636	T	T	36671636	1	4	57	0	1	0	0	0	0	0	0	0	728	406	14	5		5	AOAH	7	36671636	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1797503	36671636	122467027	1050	64039											
UBE2D4	51619	broad.mit.edu	37	chr7	43988301	43988301	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctgccttgatatcctgcGgtctcagtggtctccagcgt	10	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43988301	A	A	43988301	3	1	57	1	0	0	0	0	1	0	0	0	16977	1116	39	4	287	4	UBE2D4	7	43988301	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7316665	43988301	115150362	1051	64040											
NPC1L1	29881	broad.mit.edu	37	chr7	44556830	44556830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggaagacctcaaaagccGggtctgttccaggcactttc	12	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44556830	T	T	44556830	3	4	57	1	0	0	0	0	1	0	0	0	10666	1116	39	1	755	1	NPC1L1	7	44556830	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	568529	44556830	114581833	1052	64041											
ZMIZ2	83637	broad.mit.edu	37	chr7	44800031	44800031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaccctacagcctacccGttccatcccgggctatccca	5	20	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44800031	T	T	44800031	3	4	57	1	0	0	0	0	1	0	0	0	17823	1145	40	3	1109	3	ZMIZ2	7	44800031	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	243201	44800031	114338632	1053	64042											
PKD1L1	168507	broad.mit.edu	37	chr7	47944214	47944214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttaaccatcacacgataCctgcaggatggggaaaggag	12	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47944214	A	A	47944214	3	1	57	1	0	0	0	0	1	0	0	0	12059	521	18	3	7041	3	PKD1L1	7	47944214	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3144183	47944214	111194449	1054	64043											
ABCA13	154664	broad.mit.edu	37	chr7	48313368	48313368	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttatatgtaaatacctcaCagaggatgttacgtattcta	6	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48313368	G	G	48313368	3	3	57	1	0	0	0	0	1	0	0	0	31	479	17	4	4000	4	ABCA13	7	48313368	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	369154	48313368	110825295	1055	64044											
VWC2	375567	broad.mit.edu	37	chr7	49842351	49842351	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagccaacggtgaggtGctatgcacagtgtcagcgtg	15	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49842351	C	C	49842351	2	2	57	1	0	0	0	0	0	0	0	1	17370	1306	46	4		4	VWC2	7	49842351	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1528983	49842351	109296312	1056	64045											
EGFR	1956	broad.mit.edu	37	chr7	55241714	55241714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaaagtgctgggctccgGtgcgttcggcacggtgtata	15	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55241714	T	T	55241714	3	4	57	1	0	0	0	0	1	0	0	0	5007	1261	44	3	2496	3	EGFR	7	55241714	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5399363	55241714	103896949	1057	64046											
SEPT14	346288	broad.mit.edu	37	chr7	55872910	55872910	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccaaattaatagggcacCtaaaaattaatacaaattat	3	9	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55872910	G	G	55872910	1	3	57	0	1	0	0	0	0	0	0	0	14176	696	24	4		4	SEPT14	7	55872910	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	631196	55872910	103265753	1058	64047											
PSPH	5723	broad.mit.edu	37	chr7	56088770	56088770	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaatgctatccctacatttCtgacaccgcgtcctcaacgc	5	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56088770	G	G	56088770	3	3	57	1	0	0	0	0	1	0	0	0	12823	922	32	4	561	4	PSPH	7	56088770	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	215860	56088770	103049893	1059	64048											
ZNF479	90827	broad.mit.edu	37	chr7	57200097	57200097	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaggagcagaggacacagAgcagtgaagaggagaactgc	15	7	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57200097	T	T	57200097	1	4	57	0	1	0	0	0	0	0	0	0	18060	319	11	5		5	ZNF479	7	57200097	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1111327	57200097	101938566	1060	64049											
ZNF716	441234	broad.mit.edu	37	chr7	57522339	57522339	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaatatattgcctttctctCttttctaagatgattttggt	5	7	3	2	rs113429084		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57522339	A	A	57522339	1	1	57	0	1	0	0	0	0	0	0	0	18247	928	32	3		3	ZNF716	7	57522339	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	322242	57522339	101616324	1061	64050											
ZNF735	730291	broad.mit.edu	37	chr7	63667659	63667660	+	Intron	DNP	GT	AC	AC													tcgtgagagaggggtgggagGtggttggaaccggctgaaag							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	63667660	AC	AC	63667659	1	1	57	0	1	0	0	0	0	0	0	0	18253	1276	44	4		4	ZNF735	7	63667659	Intron	DNP	GT	TCGA-17-Z026-01A-01W-0746-08	6145320	63667659	95471004	1062	64051											
GUSB	2990	broad.mit.edu	37	chr7	65425966	65425966	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattggcaatcttccagtatCtctctcgcaaaaggaacgct	7	12	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65425966	G	G	65425966	3	3	57	1	0	0	0	0	1	0	0	0	6967	913	32	4	85	4	GUSB	7	65425966	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1758307	65425966	93712697	1063	64052											
AUTS2	26053	broad.mit.edu	37	chr7	69952102	69952102	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagcgttactgggagaggaCggtagccgcttagtgtgaag	18	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69952102	G	G	69952102	1	3	57	0	1	0	0	0	0	0	0	0	1230	551	19	4		4	AUTS2	7	69952102	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4526136	69952102	89186561	1064	64053											
MLXIPL	51085	broad.mit.edu	37	chr7	73010570	73010570	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagcgccgcttctgctcCgcggagatgtgtgtgatacg	14	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73010570	T	T	73010570	2	4	57	1	0	0	0	0	0	0	0	1	9730	639	23	4		4	MLXIPL	7	73010570	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3058468	73010570	86128093	1065	64054											
WBSCR27	155368	broad.mit.edu	37	chr7	73249273	73249273	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgtccagggtggcctccaGagcctccttgtattgaaggt	12	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73249273	C	C	73249273	3	2	57	1	0	0	0	0	1	0	0	0	17393	933	33	4	203	4	WBSCR27	7	73249273	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	238703	73249273	85889390	1066	64055											
CCDC146	57639	broad.mit.edu	37	chr7	76916146	76916146	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagacagaattaaagaccTggagaaacagttcgtaaagc	9	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76916146	A	A	76916146	3	1	57	1	0	0	0	0	1	0	0	0	2806	1580	55	5	2238	5	CCDC146	7	76916146	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3666873	76916146	82222517	1067	64056											
HGF	3082	broad.mit.edu	37	chr7	81355253	81355253	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatttgggagcagtagccaActcggatgtttggatcagtg	14	6	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81355253	T	T	81355253	3	4	57	1	0	0	0	0	1	0	0	0	7152	43	2	5	1105	5	HGF	7	81355253	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	4439107	81355253	77783410	1068	64057											
CACNA2D1	781	broad.mit.edu	37	chr7	81591751	81591751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaggtctgagcatttaCatacctgcctcaaggagtcg	10	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81591751	A	A	81591751	1	1	57	0	1	0	0	0	0	0	0	0	2574	493	17	3		3	CACNA2D1	7	81591751	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	236498	81591751	77546912	1069	64058											
SEMA3A	10371	broad.mit.edu	37	chr7	83739785	83739785	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaaaaagccagcgttaCctcaggatgatgtccaattt	7	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83739785	A	A	83739785	5	1	57	1	0	0	0	0	0	0	1	0	14137	521	18	3	1917	3	SEMA3A	7	83739785	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2148034	83739785	75398878	1070	64059											
SEMA3D	223117	broad.mit.edu	37	chr7	84702318	84702318	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatatacccacatattggaTgaaatgctccagttccacac	5	12	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84702318	G	G	84702318	3	3	57	1	0	0	0	0	1	0	0	0	14140	1464	51	5	1934	5	SEMA3D	7	84702318	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	962533	84702318	74436345	1071	64060											
ABCB4	5244	broad.mit.edu	37	chr7	87079476	87079476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaggcactctggtcaaccCtttaacctactttttcttcc	4	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87079476	A	A	87079476	1	1	57	0	1	0	0	0	0	0	0	0	43	696	24	2		2	ABCB4	7	87079476	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2377158	87079476	72059187	1072	64061											
ABCB1	5243	broad.mit.edu	37	chr7	87151352	87151352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtgagtgcttcatccaGccaaagaggcaaagcagctc	12	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87151352	T	T	87151352	1	4	57	0	1	0	0	0	0	0	0	0	40	986	34	3		3	ABCB1	7	87151352	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	71876	87151352	71987311	1073	64062											
ABCB1	5243	broad.mit.edu	37	chr7	87174373	87174373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgttaaccaatgaaagCtaatcactgaatgtcagcta	8	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87174373	T	T	87174373	1	4	57	0	1	0	0	0	0	0	0	0	40	812	28	4		4	ABCB1	7	87174373	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	23021	87174373	71964290	1074	64063											
ABCB1	5243	broad.mit.edu	37	chr7	87225140	87225140	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctttttcactgcaaaacAgcaatggaattacataaaac	4	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87225140	C	C	87225140	1	2	57	0	1	0	0	0	0	0	0	0	40	203	7	5		5	ABCB1	7	87225140	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	50767	87225140	71913523	1075	64064											
ADAM22	53616	broad.mit.edu	37	chr7	87780627	87780627	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagacaatgcaaatacatttGggggcaaagtaagtaaatag	10	4	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87780627	A	A	87780627	4	1	57	1	0	0	0	0	0	1	0	0	244	1357	47	4	1751	4	ADAM22	7	87780627	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	555487	87780627	71358036	1076	64065											
ZNF804B	219578	broad.mit.edu	37	chr7	88964538	88964538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttccataaaagagaacacCactcagttgaaaggcacaaa	7	10	1	2	rs115159731	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88964538	A	A	88964538	3	1	57	1	0	0	0	0	1	0	0	0	18300	594	21	2	2256	2	ZNF804B	7	88964538	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1183911	88964538	70174125	1077	64066											
GTPBP10	85865	broad.mit.edu	37	chr7	89984312	89984312	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatttgtaattttgcatttCtttgcctgtatttctgaaag	7	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89984312	A	A	89984312	1	1	57	0	1	0	0	0	0	0	0	0	6944	928	32	3		3	GTPBP10	7	89984312	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1019774	89984312	69154351	1078	64067											
AKAP9	10142	broad.mit.edu	37	chr7	91570285	91570285	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttccacttcgggcgggGgagcgccggaccgaatcggc	16	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91570285	T	T	91570285	1	4	57	0	1	0	0	0	0	0	0	0	459	1247	43	2		2	AKAP9	7	91570285	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1585973	91570285	67568378	1079	64068											
ANKIB1	54467	broad.mit.edu	37	chr7	92020476	92020476	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttctctgcttactAtagacagacctagaaatggt	6	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92020476	G	G	92020476	1	3	57	0	1	0	0	0	0	0	0	0	630	464	16	5		5	ANKIB1	7	92020476	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	450191	92020476	67118187	1080	64069											
SAMD9	54809	broad.mit.edu	37	chr7	92730578	92730578	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccggtttaaagcatagatCttgagtccaaaaaaattaaa	7	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92730578	G	G	92730578	1	3	57	0	1	0	0	0	0	0	0	0	13937	928	32	4		4	SAMD9	7	92730578	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	710102	92730578	66408085	1081	64070											
SAMD9L	219285	broad.mit.edu	37	chr7	92763106	92763106	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatattggtttaggagactCtgcccagcagtgtattaaat	9	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92763106	T	T	92763106	3	4	57	1	0	0	0	0	1	0	0	0	13938	922	32	4	2579	4	SAMD9L	7	92763106	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	32528	92763106	66375557	1082	64071											
GNG11	2791	broad.mit.edu	37	chr7	93555431	93555431	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttctgaagaaataaagaActatattgaagaacgttctg	8	4	2	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93555431	T	T	93555431	3	4	57	1	0	0	0	0	1	0	0	0	6588	43	2	5	131	5	GNG11	7	93555431	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	792325	93555431	65583232	1083	64072											
COL1A2	1278	broad.mit.edu	37	chr7	94041433	94041433	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggaaaagaaggtcctgtCgtaagtattgctcattttcc	10	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94041433	A	A	94041433	2	1	57	1	0	0	0	0	0	0	0	1	3710	898	31	3		3	COL1A2	7	94041433	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	486002	94041433	65097230	1084	64073											
DYNC1I1	1780	broad.mit.edu	37	chr7	95616613	95616613	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttattgaggtttcagtttCaattctctactcagttattt	5	6	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95616613	T	T	95616613	1	4	57	0	1	0	0	0	0	0	0	0	4882	841	29	4		4	DYNC1I1	7	95616613	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1575180	95616613	63522050	1085	64074											
OCM2	4951	broad.mit.edu	37	chr7	97616282	97616282	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagattttaagccacattggTttgatctcacagcccaaccc	7	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97616282	A	A	97616282	1	1	57	0	1	0	0	0	0	0	0	0	10917	1740	60	5		5	OCM2	7	97616282	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1999669	97616282	61522381	1086	64075											
TRRAP	8295	broad.mit.edu	37	chr7	98565099	98565099	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcctgtctctgacttgGtgttacagggatgagaccct	11	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98565099	C	C	98565099	1	2	57	0	1	0	0	0	0	0	0	0	16726	1276	44	4		4	TRRAP	7	98565099	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	948817	98565099	60573564	1087	64076											
CYP3A7	1551	broad.mit.edu	37	chr7	99311122	99311122	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcagagtcttttgaattctGagagtcaatcatcagctgaa	8	8	6	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99311122	A	A	99311122	4	1	57	1	0	0	0	0	0	1	0	0	4214	1299	45	4	696	4	CYP3A7	7	99311122	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	746023	99311122	59827541	1088	64077											
SPDYE2	441273	broad.mit.edu	37	chr7	102197435	102197435	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttctcaggggagtctcaGagcgggagcctctctccctt	11	14	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102197435	A	A	102197435	1	1	57	0	1	0	0	0	0	0	0	0	15146	957	33	4		4	SPDYE2	7	102197435	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2886313	102197435	56941228	1089	64078											
SLC26A5	375611	broad.mit.edu	37	chr7	103014987	103014987	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggaacagcagctcccaTagggcaggattttcaaaaaa	10	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103014987	C	C	103014987	2	2	57	1	0	0	0	0	0	0	0	1	14634	1393	49	5		5	SLC26A5	7	103014987	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	817552	103014987	56123676	1090	64079											
SLC26A4	5172	broad.mit.edu	37	chr7	107350490	107350490	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taacaaaacattgtgtctttCttttgaagattatgtgatag	7	4	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107350490	G	G	107350490	1	3	57	0	1	0	0	0	0	0	0	0	14633	928	32	4		4	SLC26A4	7	107350490	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4335503	107350490	51788173	1091	64080											
SLC26A4	5172	broad.mit.edu	37	chr7	107352992	107352992	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctttttcaagatcactctCattcaggattgtaaagatac	5	9	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107352992	T	T	107352992	2	4	57	1	0	0	0	0	0	0	0	1	14633	813	29	4		4	SLC26A4	7	107352992	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2502	107352992	51785671	1092	64081											
DLD	1738	broad.mit.edu	37	chr7	107542685	107542685	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccgaatagcttgttttgtaGaagaattaagacatatattt	7	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107542685	C	C	107542685	1	2	57	0	1	0	0	0	0	0	0	0	4591	957	33	4		4	DLD	7	107542685	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	189693	107542685	51595978	1093	64082											
LAMB4	22798	broad.mit.edu	37	chr7	107692490	107692491	+	Intron	DNP	GG	TT	TT													tcactaatggaatgcactgtGgatttcatcaaactttgtgc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107692491	TT	TT	107692490	1	4	57	0	1	0	0	0	0	0	0	0	8685	1363	47	2		2	LAMB4	7	107692490	Intron	DNP	GG	TCGA-17-Z026-01A-01W-0746-08	149805	107692490	51446173	1094	64083											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432049	117432049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcagcgttactgggaaGtgggggtgtgctactggttg	20	5	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117432049	T	T	117432049	3	4	57	1	0	0	0	0	1	0	0	0	4079	1029	36	3	3870	3	CTTNBP2	7	117432049	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9739559	117432049	41706614	1095	64084											
TSPAN12	23554	broad.mit.edu	37	chr7	120480008	120480008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatcaaggaagagcactaCcatataaatagctgagggca	10	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120480008	A	A	120480008	1	1	57	0	1	0	0	0	0	0	0	0	16761	522	18	3		3	TSPAN12	7	120480008	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3047959	120480008	38658655	1096	64085											
C7orf58	79974	broad.mit.edu	37	chr7	120918963	120918963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccttttcaatactgaaaCctagaatgtcagtgtgacta	7	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120918963	A	A	120918963	1	1	57	0	1	0	0	0	0	0	0	0	2430	522	18	3		3	C7orf58	7	120918963	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	438955	120918963	38219700	1097	64086											
PTPRZ1	5803	broad.mit.edu	37	chr7	121674344	121674344	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattttttacaggaagtgcaGagctgtactgttgacttagg	11	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121674344	A	A	121674344	2	1	57	1	0	0	0	0	0	0	0	1	12922	933	33	4		4	PTPRZ1	7	121674344	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	755381	121674344	37464319	1098	64087											
TAS2R16	50833	broad.mit.edu	37	chr7	122634761	122634761	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactctcttctggtattaatTatatcaattgctcgggagtc	7	8	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122634761	C	C	122634761	1	2	57	0	1	0	0	0	0	0	0	0	15688	1769	61	5		5	TAS2R16	7	122634761	3'UTR	SNP	T	TCGA-17-Z026-01A-01W-0746-08	960417	122634761	36503902	1099	64088											
TAS2R16	50833	broad.mit.edu	37	chr7	122635169	122635169	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcctggaactgatactgatGaaaattttcaagtttgtcag	9	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122635169	T	T	122635169	3	4	57	1	0	0	0	0	1	0	0	0	15688	1290	45	3	359	3	TAS2R16	7	122635169	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	408	122635169	36503494	1100	64089											
GRM8	2918	broad.mit.edu	37	chr7	126086315	126086315	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcttgcgtttttgaacatTctgttctggatgaaaaatta	7	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126086315	A	A	126086315	3	1	57	1	0	0	0	0	1	0	0	0	6869	1783	62	5	242	5	GRM8	7	126086315	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3451146	126086315	33052348	1101	64090											
PAX4	5078	broad.mit.edu	37	chr7	127253140	127253140	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggctcttctgttggaaaaCcagacctgagcgaggacagg	13	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127253140	G	G	127253140	3	3	57	1	0	0	0	0	1	0	0	0	11575	508	18	4	420	4	PAX4	7	127253140	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1166825	127253140	31885523	1102	64091											
FLNC	2318	broad.mit.edu	37	chr7	128490893	128490893	+	Missense_Mutation	SNP	C	A	A													ctcggggaagacggcacggcCcaacatcaccgacaacaagg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128490893	A	A	128490893	3	1	57	1	0	0	0	0	1	0	0	0	5993	623	22	2	5565	2	FLNC	7	128490893	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1237753	128490893	30647770	1103	64092	295	2									
FLNC	2318	broad.mit.edu	37	chr7	128490895	128490895	+	Missense_Mutation	SNP	A	C	C													cggggaagacggcacggcccAacatcaccgacaacaaggac							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128490895	C	C	128490895	3	2	57	1	0	0	0	0	1	0	0	0	5993	130	5	5	5567	5	FLNC	7	128490895	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2	128490895	30647768	1104	64093	295	2									
FAM40B	57464	broad.mit.edu	37	chr7	129096471	129096471	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaagctgcgaggccgccgTggctctcgaagggtatggac	15	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129096471	A	A	129096471	2	1	57	1	0	0	0	0	0	0	0	1	5612	1683	59	5		5	FAM40B	7	129096471	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	605576	129096471	30042192	1105	64094											
CPA5	93979	broad.mit.edu	37	chr7	129986529	129986529	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtggctgccctgctggtgCctgatcaaggcggagagtca	16	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129986529	G	G	129986529	1	3	57	0	1	0	0	0	0	0	0	0	3825	754	26	4		4	CPA5	7	129986529	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	890058	129986529	29152134	1106	64095											
PODXL	5420	broad.mit.edu	37	chr7	131191400	131191400	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacagatgccagccgtatgCcgcacttatcttgggccggg	13	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131191400	T	T	131191400	3	4	57	1	0	0	0	0	1	0	0	0	12275	739	26	4	505	4	PODXL	7	131191400	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1204871	131191400	27947263	1107	64096											
SVOPL	136306	broad.mit.edu	37	chr7	138281194	138281194	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctttggtttcgatggggaGagtgaatgcagaaatggcgc	15	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138281194	C	C	138281194	3	2	57	1	0	0	0	0	1	0	0	0	15542	942	33	4	51	4	SVOPL	7	138281194	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7089794	138281194	20857469	1108	64097											
KIAA1549	57670	broad.mit.edu	37	chr7	138522652	138522652	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgcgaggcgaggccgatCagctgtggaagttctgcacg	15	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138522652	T	T	138522652	2	4	57	1	0	0	0	0	0	0	0	1	8314	837	29	4		4	KIAA1549	7	138522652	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	241458	138522652	20616011	1109	64098											
TTC26	79989	broad.mit.edu	37	chr7	138833140	138833140	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtattgatggaagtgtGtttttaatgtacttcattcc	10	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138833140	A	A	138833140	1	1	57	0	1	0	0	0	0	0	0	0	16820	1392	48	4		4	TTC26	7	138833140	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	310488	138833140	20305523	1110	64099											
TBXAS1	6916	broad.mit.edu	37	chr7	139516553	139516553	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagttgaactactgcaataGagatgtttgaatctcaggat	10	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139516553	C	C	139516553	1	2	57	0	1	0	0	0	0	0	0	0	15786	957	33	4		4	TBXAS1	7	139516553	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	683413	139516553	19622110	1111	64100											
TRPV5	56302	broad.mit.edu	37	chr7	142611889	142611889	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaatcatctgcaggaaacaGaaggaagaaagggtgggatg	14	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142611889	C	C	142611889	1	2	57	0	1	0	0	0	0	0	0	0	16724	957	33	4		4	TRPV5	7	142611889	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3095336	142611889	16526774	1112	64101											
OR6V1	346517	broad.mit.edu	37	chr7	142749742	142749742	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catggtccagttctacttccActtttccctggggtccacct	7	15	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142749742	T	T	142749742	3	4	57	1	0	0	0	0	1	0	0	0	11305	159	6	5	307	5	OR6V1	7	142749742	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	137853	142749742	16388921	1113	64102											
CLCN1	1180	broad.mit.edu	37	chr7	143018849	143018849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaatacttcgtggggttGtcctgaaggaatacctcaca	10	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143018849	T	T	143018849	3	4	57	1	0	0	0	0	1	0	0	0	3493	1377	48	3	622	3	CLCN1	7	143018849	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	269107	143018849	16119814	1114	64103											
TPK1	27010	broad.mit.edu	37	chr7	144288448	144288448	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcagggccaatgttttctTctagtctactcaagtggtag	10	8	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144288448	A	A	144288448	1	1	57	0	1	0	0	0	0	0	0	0	16528	1798	62	5		5	TPK1	7	144288448	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1269599	144288448	14850215	1115	64104											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471274	146471274	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatacataaaagacatatcaGattcaatgattttttaacca	4	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146471274	T	T	146471274	1	4	57	0	1	0	0	0	0	0	0	0	3679	957	33	3		3	CNTNAP2	7	146471274	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2182826	146471274	12667389	1116	64105											
CNTNAP2	26047	broad.mit.edu	37	chr7	147600733	147600733	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggctctgggcctggaatCcagaaatgtgcctgcggcat	15	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147600733	A	A	147600733	2	1	57	1	0	0	0	0	0	0	0	1	3679	845	30	3		3	CNTNAP2	7	147600733	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1129459	147600733	11537930	1117	64106											
DPP6	1804	broad.mit.edu	37	chr7	154519683	154519683	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctttttcatttttctttGactttaactgtaaattaaac	3	6	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154519683	T	T	154519683	1	4	57	0	1	0	0	0	0	0	0	0	4770	1305	45	3		3	DPP6	7	154519683	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6918950	154519683	4618980	1118	64107											
PTPRN2	5799	broad.mit.edu	37	chr7	157366970	157366970	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagcaccagcaagcaagGtcagaggtcgttagaggctc	13	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157366970	C	C	157366970	1	2	57	0	1	0	0	0	0	0	0	0	12916	1276	44	4		4	PTPRN2	7	157366970	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2847287	157366970	1771693	1119	64108											
PTPRN2	5799	broad.mit.edu	37	chr7	157959951	157959951	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacgtgtgggccacataGgtcaggatgctctcggagaa	15	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157959951	T	T	157959951	2	4	57	1	0	0	0	0	0	0	0	1	12916	987	35	2		2	PTPRN2	7	157959951	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	592981	157959951	1178712	1120	64109											
DLGAP2	9228	broad.mit.edu	37	chr8	1485954	1485955	+	Intron	DNP	CA	AG	AG													aggaaggaaggaaggaaggaCaaatggataaatggatggat							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	1485955	AG	AG	1485954	1	1	57	0	1	0	0	0	0	0	0	0	4600	493	17	3		3	DLGAP2	8	1485954	Intron	DNP	CA	TCGA-17-Z026-01A-01W-0746-08		1485954	144878068	1121	64110											
CSMD1	64478	broad.mit.edu	37	chr8	4646080	4646080	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatttccttgaagcaggctGacaagaaaatcagagaatgt	10	6	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4646080	A	A	4646080	1	1	57	0	1	0	0	0	0	0	0	0	3978	1305	45	4		4	CSMD1	8	4646080	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3160126	4646080	141717942	1122	64111											
DEFA4	1669	broad.mit.edu	37	chr8	6794277	6794277	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgaagagcagagcttttatCccatgcaaaggaaatagata	9	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6794277	G	G	6794277	3	3	57	1	0	0	0	0	1	0	0	0	4424	855	30	4	156	4	DEFA4	8	6794277	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2148197	6794277	139569745	1123	64112											
TNKS	8658	broad.mit.edu	37	chr8	9435689	9435689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagggctggtgctgattaGggaaatggaagtttgcactc	14	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9435689	T	T	9435689	1	4	57	0	1	0	0	0	0	0	0	0	16442	1015	35	2		2	TNKS	8	9435689	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2641412	9435689	136928333	1124	64113											
MTMR9	66036	broad.mit.edu	37	chr8	11167224	11167224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatttcagcgttcctgagCgaaacatggcgctgctaact	10	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11167224	T	T	11167224	1	4	57	0	1	0	0	0	0	0	0	0	10044	783	27	4		4	MTMR9	8	11167224	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1731535	11167224	135196798	1125	64114											
BLK	640	broad.mit.edu	37	chr8	11400689	11400689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgcagaggatctgagGccccgctctctcatgtcctc	10	15	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11400689	T	T	11400689	1	4	57	0	1	0	0	0	0	0	0	0	1450	1218	42	3		3	BLK	8	11400689	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	233465	11400689	134963333	1126	64115											
SGCZ	137868	broad.mit.edu	37	chr8	14911993	14911994	+	Intron	INS	-	C	C													gctgcaatgagaaacaatagINStttctactccttgggaagac					rs147428309	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14911994	C	C	14911993	6	5	57	0	1	1	1	0	0	0	0	0	14317	1044	36	0		0	SGCZ	8	14911993	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	3511304	14911993	131452029	1127	64116											
PCM1	5108	broad.mit.edu	37	chr8	17849061	17849061	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaaatgtaggtaacaccgtGattcacttagatcaagcatt	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17849061	A	A	17849061	2	1	57	1	0	0	0	0	0	0	0	1	11678	1277	45	4		4	PCM1	8	17849061	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2937068	17849061	128514961	1128	64117											
SH2D4A	63898	broad.mit.edu	37	chr8	19180892	19180893	+	Intron	INS	-	T	T													atttcacctgttccttttgaINStttttttttttttttgagac					rs79641928		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19180893	T	T	19180892	6	5	57	0	1	1	1	0	0	0	0	0	14348	348	12	0		0	SH2D4A	8	19180892	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	1331831	19180892	127183130	1129	64118											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19315277	19315277	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagcttctaagatccaacaCcgcacaatcaagggcttaaa	6	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19315277	G	G	19315277	1	3	57	0	1	0	0	0	0	0	0	0	3972	522	18	4		4	CSGALNACT1	8	19315277	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	134385	19315277	127048745	1130	64119											
INTS10	55174	broad.mit.edu	37	chr8	19701531	19701531	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgatgtttgctgtatttCagattaccctgtgacttcct	8	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19701531	T	T	19701531	1	4	57	0	1	0	0	0	0	0	0	0	7846	841	29	4		4	INTS10	8	19701531	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	386254	19701531	126662491	1131	64120											
HR	55806	broad.mit.edu	37	chr8	21977862	21977862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggacacttacgctcaggCcaggagaagccctcccagaa	12	13	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21977862	A	A	21977862	3	1	57	1	0	0	0	0	1	0	0	0	7414	740	26	3	832	3	HR	8	21977862	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2276331	21977862	124386160	1132	64121											
BMP1	649	broad.mit.edu	37	chr8	22053594	22053594	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtccccccgtaggccgcattCtggctttgggtttgttttgt	12	11	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22053594	G	G	22053594	1	3	57	0	1	0	0	0	0	0	0	0	1462	928	32	4		4	BMP1	8	22053594	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	75732	22053594	124310428	1133	64122											
PTK2B	2185	broad.mit.edu	37	chr8	27288605	27288605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagggggccaggagggGgcagggagaggctgcaatcg	22	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27288605	T	T	27288605	1	4	57	0	1	0	0	0	0	0	0	0	12869	1247	43	2		2	PTK2B	8	27288605	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5235011	27288605	119075417	1134	64123											
C8orf80	389643	broad.mit.edu	37	chr8	27898706	27898706	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttccgcaaatctccgCaggacactcatgtgcaagtg	8	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27898706	A	A	27898706	2	1	57	1	0	0	0	0	0	0	0	1	2465	697	25	3		3	C8orf80	8	27898706	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	610101	27898706	118465316	1135	64124											
NRG1	3084	broad.mit.edu	37	chr8	32505526	32505526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatcgccggcctcaagtGggtatttgtggacaagatct	12	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32505526	T	T	32505526	1	4	57	0	1	0	0	0	0	0	0	0	10742	1357	47	2		2	NRG1	8	32505526	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4606820	32505526	113858496	1136	64125											
UNC5D	137970	broad.mit.edu	37	chr8	35406824	35406824	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacaggaactgacaatggcGaagcccttcccgaatccatc	8	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35406824	A	A	35406824	3	1	57	1	0	0	0	0	1	0	0	0	17121	1059	37	4	124	4	UNC5D	8	35406824	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2901298	35406824	110957198	1137	64126											
UNC5D	137970	broad.mit.edu	37	chr8	35579563	35579563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatacaaggcattttagaaaCacgattactgtgtgaaagtg	9	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35579563	A	A	35579563	1	1	57	0	1	0	0	0	0	0	0	0	17121	493	17	3		3	UNC5D	8	35579563	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	172739	35579563	110784459	1138	64127											
BRF2	55290	broad.mit.edu	37	chr8	37702165	37702165	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggggtacagggcagatcCgcttcggggacttcaacatg	15	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37702165	T	T	37702165	3	4	57	1	0	0	0	0	1	0	0	0	1520	652	23	4	160	4	BRF2	8	37702165	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2122602	37702165	108661857	1139	64128											
GOT1L1	137362	broad.mit.edu	37	chr8	37794809	37794809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctacctccaccacattgaGgagtatgtcggggtccatgc	10	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37794809	T	T	37794809	3	4	57	1	0	0	0	0	1	0	0	0	6644	1000	35	2	629	2	GOT1L1	8	37794809	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	92644	37794809	108569213	1140	64129											
ADAM9	8754	broad.mit.edu	37	chr8	38961283	38961283	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taatactttttttttttcttGatgttttcttgaaaagcctt	4	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38961283	T	T	38961283	1	4	57	0	1	0	0	0	0	0	0	0	253	1305	45	3		3	ADAM9	8	38961283	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1166474	38961283	107402739	1141	64130											
ANK1	286	broad.mit.edu	37	chr8	41525700	41525700	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatgcttagctcagggcttGagtgcctgagaggcagccct	13	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41525700	C	C	41525700	1	2	57	0	1	0	0	0	0	0	0	0	620	1305	45	4		4	ANK1	8	41525700	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2564417	41525700	104838322	1142	64131											
ANK1	286	broad.mit.edu	37	chr8	41525861	41525861	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctccggtccctgtcgGcctgggagctctcagcctcg	13	17	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41525861	T	T	41525861	3	4	57	1	0	0	0	0	1	0	0	0	620	1203	42	3	669	3	ANK1	8	41525861	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	161	41525861	104838161	1143	64132											
ANK1	286	broad.mit.edu	37	chr8	41573371	41573371	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtggggtctggtcatcctgGaccccgaagggaaaacaaag	14	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41573371	T	T	41573371	1	4	57	0	1	0	0	0	0	0	0	0	620	1189	41	3		3	ANK1	8	41573371	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	47510	41573371	104790651	1144	64133											
VDAC3	7419	broad.mit.edu	37	chr8	42252647	42252647	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaaaccaagtcttgtagtgGagtggtgagtatctaatata	11	4	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42252647	C	C	42252647	3	2	57	1	0	0	0	0	1	0	0	0	17275	1174	41	4	119	4	VDAC3	8	42252647	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	679276	42252647	104111375	1145	64134											
POTEA	340441	broad.mit.edu	37	chr8	43211893	43211893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttccaccttgtttccccCcgatgcagattctgctagcc	6	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43211893	A	A	43211893	1	1	57	0	1	0	0	0	0	0	0	0	12356	638	22	2		2	POTEA	8	43211893	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	959246	43211893	103152129	1146	64135											
PRKDC	5591	broad.mit.edu	37	chr8	48866265	48866265	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggtagtttgggctctctTactgctgatgtcatctaaaa	9	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48866265	C	C	48866265	2	2	57	1	0	0	0	0	0	0	0	1	12627	1741	61	5		5	PRKDC	8	48866265	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	5654372	48866265	97497757	1147	64136											
SNAI2	6591	broad.mit.edu	37	chr8	49831474	49831474	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctttacatcagaatgggtCtgcagatgagccctcagatt	9	9	4	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49831474	A	A	49831474	3	1	57	1	0	0	0	0	1	0	0	0	14941	912	32	3	111	3	SNAI2	8	49831474	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	965209	49831474	96532548	1148	64137											
SNTG1	54212	broad.mit.edu	37	chr8	51095742	51095742	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttattttcatactgatgacAtcaacctggtcactcctgct	5	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51095742	C	C	51095742	1	2	57	0	1	0	0	0	0	0	0	0	14988	232	8	5		5	SNTG1	8	51095742	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1264268	51095742	95268280	1149	64138											
SNTG1	54212	broad.mit.edu	37	chr8	51314968	51314968	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttaataaaaatgtttatTcacagggcattttaaatatg	6	3	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51314968	A	A	51314968	1	1	57	0	1	0	0	0	0	0	0	0	14988	1798	62	5		5	SNTG1	8	51314968	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	219226	51314968	95049054	1150	64139											
SNTG1	54212	broad.mit.edu	37	chr8	51664698	51664698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaaattcatcacataaCacctctaactacattaatgc	2	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51664698	T	T	51664698	1	4	57	0	1	0	0	0	0	0	0	0	14988	493	17	4		4	SNTG1	8	51664698	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	349730	51664698	94699324	1151	64140											
PXDNL	137902	broad.mit.edu	37	chr8	52320978	52320978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaatttcacctaaggtgGcattcagtcggtaaagaata	10	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52320978	T	T	52320978	3	4	57	1	0	0	0	0	1	0	0	0	12956	1203	42	3	1213	3	PXDNL	8	52320978	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	656280	52320978	94043044	1152	64141											
PXDNL	137902	broad.mit.edu	37	chr8	52336186	52336186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggccaaaagaattccgagCcacacattcatatcttccct	5	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52336186	A	A	52336186	3	1	57	1	0	0	0	0	1	0	0	0	12956	739	26	3	2687	3	PXDNL	8	52336186	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	15208	52336186	94027836	1153	64142											
PXDNL	137902	broad.mit.edu	37	chr8	52336205	52336205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacacattcatatcttccCtggtcagggaaccctgcgtc	8	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52336205	A	A	52336205	3	1	57	1	0	0	0	0	1	0	0	0	12956	680	24	2	2706	2	PXDNL	8	52336205	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	19	52336205	94027817	1154	64143											
PXDNL	137902	broad.mit.edu	37	chr8	52384893	52384893	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaattattgatgtatttTtcagagatacaaaattatgg	7	2	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52384893	C	C	52384893	1	2	57	0	1	0	0	0	0	0	0	0	12956	1856	64	5		5	PXDNL	8	52384893	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	48688	52384893	93979129	1155	64144											
ST18	9705	broad.mit.edu	37	chr8	53055629	53055629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacaaacaaaaaacaaaCaaaacacagaagccattagg	5	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53055629	A	A	53055629	1	1	57	0	1	0	0	0	0	0	0	0	15330	493	17	3		3	ST18	8	53055629	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	670736	53055629	93308393	1156	64145											
OPRK1	4986	broad.mit.edu	37	chr8	54141892	54141892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccatcgatgtccctcaGgtaagcaggatcctgaactg	9	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54141892	T	T	54141892	3	4	57	1	0	0	0	0	1	0	0	0	10979	991	35	2	38	2	OPRK1	8	54141892	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1086263	54141892	92222130	1157	64146											
XKR4	114786	broad.mit.edu	37	chr8	56015036	56015036	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaggagggctctcctccgGtgtggaggcatcatggccgc	15	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56015036	A	A	56015036	1	1	57	1	0	0	0	0	0	0	0	0	17560	1276	44	4		4	XKR4	8	56015036	Translation_Start_Site	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1873144	56015036	90348986	1158	64147											
TMEM68	137695	broad.mit.edu	37	chr8	56675493	56675493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagaatcctgtcctacaCcacaggtttgatttttgtct	7	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56675493	A	A	56675493	3	1	57	1	0	0	0	0	1	0	0	0	16320	507	18	3	763	3	TMEM68	8	56675493	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	660457	56675493	89688529	1159	64148											
ASPH	444	broad.mit.edu	37	chr8	62465608	62465608	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctctttgttcccaaccctCtgcatggcatcccccaggtg	7	17	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62465608	G	G	62465608	3	3	57	1	0	0	0	0	1	0	0	0	1057	912	32	4	692	4	ASPH	8	62465608	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5790115	62465608	83898414	1160	64149											
ASPH	444	broad.mit.edu	37	chr8	62475442	62475442	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaacctctcatatgacctGagtaggtgggaatttaaaaa	11	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62475442	C	C	62475442	1	2	57	0	1	0	0	0	0	0	0	0	1057	1305	45	4		4	ASPH	8	62475442	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9834	62475442	83888580	1161	64150											
NKAIN3	286183	broad.mit.edu	37	chr8	63769246	63769246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcatcagatctgtggcCcatcaggtcttggaaacgtt	11	9	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63769246	A	A	63769246	1	1	57	0	1	0	0	0	0	0	0	0	10532	638	22	2		2	NKAIN3	8	63769246	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1293804	63769246	82594776	1162	64151											
DNAJC5B	85479	broad.mit.edu	37	chr8	66992529	66992529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaggtctctgggggtaCctgggtacagacttgatttc	13	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66992529	A	A	66992529	1	1	57	0	1	0	0	0	0	0	0	0	4691	522	18	3		3	DNAJC5B	8	66992529	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3223283	66992529	79371493	1163	64152											
SULF1	23213	broad.mit.edu	37	chr8	70513116	70513116	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgagagagaaagaaagaGagagagtatgtgtttagtgg	15	0	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70513116	C	C	70513116	1	2	57	0	1	0	0	0	0	0	0	0	15488	957	33	4		4	SULF1	8	70513116	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3520587	70513116	75850906	1164	64153											
NCOA2	10499	broad.mit.edu	37	chr8	71060482	71060482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatatggaaatttcttggCataaccagccatttctcata	5	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71060482	A	A	71060482	1	1	57	0	1	0	0	0	0	0	0	0	10324	725	25	3		3	NCOA2	8	71060482	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	547366	71060482	75303540	1165	64154											
TRPA1	8989	broad.mit.edu	37	chr8	72975641	72975641	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaatcaaattaatAgcatccaccaaaatagactt	2	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72975641	G	G	72975641	1	3	57	0	1	0	0	0	0	0	0	0	16702	435	15	5		5	TRPA1	8	72975641	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1915159	72975641	73388381	1166	64155											
KCNB2	9312	broad.mit.edu	37	chr8	73819640	73819640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccacactcacacgcacaCacaactatttaaaagtagaa	3	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73819640	A	A	73819640	1	1	57	0	1	0	0	0	0	0	0	0	8083	493	17	3		3	KCNB2	8	73819640	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	843999	73819640	72544382	1167	64156											
KCNB2	9312	broad.mit.edu	37	chr8	73848655	73848655	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttccagcctggtatttttTgctgagaaggatgaagatgc	11	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73848655	G	G	73848655	3	3	57	1	0	0	0	0	1	0	0	0	8083	1809	63	5	1071	5	KCNB2	8	73848655	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	29015	73848655	72515367	1168	64157											
JPH1	56704	broad.mit.edu	37	chr8	75227268	75227268	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctcttctttggagccgtCaggaaacacggtacagccat	9	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75227268	T	T	75227268	3	4	57	1	0	0	0	0	1	0	0	0	8030	826	29	4	1034	4	JPH1	8	75227268	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1378613	75227268	71136754	1169	64158											
ZFHX4	79776	broad.mit.edu	37	chr8	77617728	77617728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaagtgaacccactgaaCcgggagatgaggatgaagaa	12	7	1	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77617728	A	A	77617728	3	1	57	1	0	0	0	0	1	0	0	0	17761	507	18	3	1407	3	ZFHX4	8	77617728	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2390460	77617728	68746294	1170	64159											
ZNF704	619279	broad.mit.edu	37	chr8	81709418	81709418	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctaaggccttgggcagcTctgcccccatggcattcctg	11	15	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81709418	A	A	81709418	1	1	57	0	1	0	0	0	0	0	0	0	18234	1566	54	5		5	ZNF704	8	81709418	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	4091690	81709418	64654604	1171	64160											
CA13	377677	broad.mit.edu	37	chr8	86328540	86328540	+	Intron	DEL	A	-	-													tttgcattcaacaaaggactAatatccagaatctacaagga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86328540	-	-	86328540	6	5	57	0	1	1	0	1	0	0	0	0	2540	377	13	0		0	CA13	8	86328540	Intron	DEL	A	TCGA-17-Z026-01A-01W-0746-08	4619122	86328540	60035482	1172	64161											
CA2	760	broad.mit.edu	37	chr8	86385924	86385924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatgttttaattttagtgCtcaagggaggacccctggat	10	6	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86385924	A	A	86385924	3	1	57	1	0	0	0	0	1	0	0	0	2542	797	28	3	245	3	CA2	8	86385924	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	57384	86385924	59978098	1173	64162											
CNGB3	54714	broad.mit.edu	37	chr8	87644958	87644958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgacagcactgtgtatcCagtgattcatactcagctta	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87644958	A	A	87644958	1	1	57	0	1	0	0	0	0	0	0	0	3633	609	21	2		2	CNGB3	8	87644958	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1259034	87644958	58719064	1174	64163											
MMP16	4325	broad.mit.edu	37	chr8	89129075	89129075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaagaggtctttaagatcGtatattttctgaaaaaaaca	6	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89129075	T	T	89129075	1	4	57	0	1	0	0	0	0	0	0	0	9748	1160	40	3		3	MMP16	8	89129075	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1484117	89129075	57234947	1175	64164											
MMP16	4325	broad.mit.edu	37	chr8	89180027	89180027	+	Missense_Mutation	SNP	C	A	A													atcaaagggagagctgtcccCatggaaaccagatgcaaaaa							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89180027	A	A	89180027	3	1	57	1	0	0	0	0	1	0	0	0	9748	594	21	2	1427	2	MMP16	8	89180027	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	50952	89180027	57183995	1176	64165	296	2									
MMP16	4325	broad.mit.edu	37	chr8	89180029	89180029	+	Missense_Mutation	SNP	T	A	A													caaagggagagctgtccccaTggaaaccagatgcaaaaata							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89180029	A	A	89180029	3	1	57	1	0	0	0	0	1	0	0	0	9748	1464	51	5	1429	5	MMP16	8	89180029	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2	89180029	57183993	1177	64166	296	2									
RIPK2	8767	broad.mit.edu	37	chr8	90775204	90775204	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatcattaaatgaactcctAcatagggtaagtattacaca	7	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90775204	T	T	90775204	2	4	57	1	0	0	0	0	0	0	0	1	13492	378	14	5		5	RIPK2	8	90775204	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1595175	90775204	55588818	1178	64167											
TMEM67	91147	broad.mit.edu	37	chr8	94807631	94807631	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaattcttttttttaaaTtgcagacagttgtgaaattc	6	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94807631	A	A	94807631	1	1	57	0	1	0	0	0	0	0	0	0	16319	1508	52	5		5	TMEM67	8	94807631	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	4032427	94807631	51556391	1179	64168											
RAD54B	25788	broad.mit.edu	37	chr8	95479852	95479852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccaaatataaaaatagCtcaaaactacaactaagatg	3	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95479852	A	A	95479852	1	1	57	0	1	0	0	0	0	0	0	0	13100	812	28	3		3	RAD54B	8	95479852	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	672221	95479852	50884170	1180	64169											
CCNE2	9134	broad.mit.edu	37	chr8	95902558	95902558	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggggatgaacaataaactCttgagagtacatagaaagca	10	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95902558	T	T	95902558	1	4	57	0	1	0	0	0	0	0	0	0	2951	928	32	4		4	CCNE2	8	95902558	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	422706	95902558	50461464	1181	64170											
C8orf37	157657	broad.mit.edu	37	chr8	96281381	96281381	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtgtgcaaaacttggactCgacttcatccaagagctcgt	10	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96281381	G	G	96281381	3	3	57	1	0	0	0	0	1	0	0	0	2449	893	31	4	610	4	C8orf37	8	96281381	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	378823	96281381	50082641	1182	64171											
PGCP	10404	broad.mit.edu	37	chr8	98155361	98155361	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgctgctgtttgggctGttgtttcttatgttgttgca	12	6	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98155361	A	A	98155361	3	1	57	1	0	0	0	0	1	0	0	0	11881	1377	48	4	1395	4	PGCP	8	98155361	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1873980	98155361	48208661	1183	64172											
TSPYL5	85453	broad.mit.edu	37	chr8	98289327	98289327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcttgcccccagaagcccGggatattttggatgaggtgg	14	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98289327	T	T	98289327	3	4	57	1	0	0	0	0	1	0	0	0	16787	1116	39	1	511	1	TSPYL5	8	98289327	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	133966	98289327	48074695	1184	64173											
RGS22	26166	broad.mit.edu	37	chr8	101020662	101020662	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatggctcaagaaggaggaGaaggatatattcctctgctg	12	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101020662	A	A	101020662	3	1	57	1	0	0	0	0	1	0	0	0	13414	942	33	4	1544	4	RGS22	8	101020662	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2731335	101020662	45343360	1185	64174											
RGS22	26166	broad.mit.edu	37	chr8	101117511	101117511	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaactctggcaaaaaggagGaaagaaaacacacagctttc	8	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101117511	A	A	101117511	1	1	57	0	1	0	0	0	0	0	0	0	13414	1189	41	4		4	RGS22	8	101117511	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	96849	101117511	45246511	1186	64175											
RNF19A	25897	broad.mit.edu	37	chr8	101271092	101271092	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaagaagttttcatgctttCtaggtcagaacaactaaatt	6	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101271092	G	G	101271092	3	3	57	1	0	0	0	0	1	0	0	0	13581	922	32	4	311	4	RNF19A	8	101271092	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	153581	101271092	45092930	1187	64176											
PABPC1	26986	broad.mit.edu	37	chr8	101724571	101724571	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttactagacctcaaataaatGaaccatatgttttcttacct	3	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101724571	A	A	101724571	1	1	57	0	1	0	0	0	0	0	0	0	11457	1305	45	4		4	PABPC1	8	101724571	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	453479	101724571	44639451	1188	64177											
GRHL2	79977	broad.mit.edu	37	chr8	102570809	102570809	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccccgagagctctgccatCatcccggtgtcgggaatcac	10	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102570809	T	T	102570809	2	4	57	1	0	0	0	0	0	0	0	1	6830	816	29	4		4	GRHL2	8	102570809	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	846238	102570809	43793213	1189	64178											
UBR5	51366	broad.mit.edu	37	chr8	103372760	103372760	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accgaaatcaaaacacaggtTtaatataatacctaagagct	5	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103372760	A	A	103372760	1	1	57	0	1	0	0	0	0	0	0	0	17031	1856	64	5		5	UBR5	8	103372760	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	801951	103372760	42991262	1190	64179											
AZIN1	51582	broad.mit.edu	37	chr8	103851074	103851074	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactttatctgagacactTgcttgcaaggacttatgtaa	7	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103851074	C	C	103851074	3	2	57	1	0	0	0	0	1	0	0	0	1247	1812	63	5	1031	5	AZIN1	8	103851074	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	478314	103851074	42512948	1191	64180											
ATP6V1C1	528	broad.mit.edu	37	chr8	104053311	104053311	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaagaaaacctcctctccaGccattggcatgatttaaaat	5	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104053311	C	C	104053311	1	2	57	0	1	0	0	0	0	0	0	0	1184	986	34	4		4	ATP6V1C1	8	104053311	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	202237	104053311	42310711	1192	64181											
RIMS2	9699	broad.mit.edu	37	chr8	105017428	105017428	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaattaccaatgactaaggGatagtgattggaagttggat	11	3	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105017428	C	C	105017428	1	2	57	0	1	0	0	0	0	0	0	0	13479	1189	41	4		4	RIMS2	8	105017428	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	964117	105017428	41346594	1193	64182											
RIMS2	9699	broad.mit.edu	37	chr8	105105841	105105841	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagctacatgtctgtccaatCagaacgcccaggaggaaaca	9	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105105841	G	G	105105841	4	3	57	1	0	0	0	0	0	1	0	0	13479	841	29	4		4	RIMS2	8	105105841	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	88413	105105841	41258181	1194	64183											
RIMS2	9699	broad.mit.edu	37	chr8	105256934	105256934	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaaacaatggtgtttTgtgcttctacagatttttta	7	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105256934	A	A	105256934	1	1	57	0	1	0	0	0	0	0	0	0	13479	1827	63	5		5	RIMS2	8	105256934	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	151093	105256934	41107088	1195	64184											
RIMS2	9699	broad.mit.edu	37	chr8	105261114	105261114	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaattctctaaatttcataGaatcttctctctctctctct	2	11	7	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105261114	C	C	105261114	1	2	57	0	1	0	0	0	0	0	0	0	13479	957	33	4		4	RIMS2	8	105261114	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4180	105261114	41102908	1196	64185											
TM7SF4	81501	broad.mit.edu	37	chr8	105360888	105360888	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagcatttgggagtttgCtgtttggttgctcttatttc	10	7	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105360888	A	A	105360888	4	1	57	1	0	0	0	0	0	1	0	0	16099	805	28	3	110	3	TM7SF4	8	105360888	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	99774	105360888	41003134	1197	64186											
TRHR	7201	broad.mit.edu	37	chr8	110100433	110100433	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagatcctaaagaaaactCtaagacatggaaaaatgatt	6	6	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110100433	G	G	110100433	3	3	57	1	0	0	0	0	1	0	0	0	16604	913	32	4	694	4	TRHR	8	110100433	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4739545	110100433	36263589	1198	64187											
TRHR	7201	broad.mit.edu	37	chr8	110131136	110131136	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaatcctgcttcctgggatCacctccccaataaatgacct	5	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110131136	G	G	110131136	1	3	57	0	1	0	0	0	0	0	0	0	16604	841	29	4		4	TRHR	8	110131136	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	30703	110131136	36232886	1199	64188											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457161	110457161	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctggatttgccgtttcttCtgcaggtgtaaaagtcctta	9	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110457161	G	G	110457161	3	3	57	1	0	0	0	0	1	0	0	0	12067	913	32	4	5213	4	PKHD1L1	8	110457161	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	326025	110457161	35906861	1200	64189											
PKHD1L1	93035	broad.mit.edu	37	chr8	110502186	110502186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccctaccttaggaaatGcaagaataagtaatgtggaa	8	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110502186	T	T	110502186	3	4	57	1	0	0	0	0	1	0	0	0	12067	1319	46	3	10124	3	PKHD1L1	8	110502186	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	45025	110502186	35861836	1201	64190											
CSMD3	114788	broad.mit.edu	37	chr8	113529283	113529283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatacagactggtgggctgGgctgccagaagtaccgattt	13	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113529283	T	T	113529283	3	4	57	1	0	0	0	0	1	0	0	0	3980	1232	43	2	6563	2	CSMD3	8	113529283	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3027097	113529283	32834739	1202	64191											
CSMD3	114788	broad.mit.edu	37	chr8	114137842	114137842	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttcagaaagatgagaaatAaatacagtagtaaagaagag	10	2	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114137842	T	T	114137842	1	4	57	0	1	0	0	0	0	0	0	0	3980	377	13	5		5	CSMD3	8	114137842	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	608559	114137842	32226180	1203	64192											
SLC30A8	169026	broad.mit.edu	37	chr8	118147693	118147693	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgaatatcatccaattcCtataccttgttgcttctgaa	5	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118147693	T	T	118147693	1	4	57	0	1	0	0	0	0	0	0	0	14675	696	24	4		4	SLC30A8	8	118147693	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4009851	118147693	28216329	1204	64193											
MED30	90390	broad.mit.edu	37	chr8	118533130	118533130	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgccatgtccacccctccGttggccgcgtcggggatggc	14	17	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118533130	T	T	118533130	2	4	57	1	0	0	0	0	0	0	0	1	9541	1132	40	3		3	MED30	8	118533130	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	385437	118533130	27830892	1205	64194											
MTBP	27085	broad.mit.edu	37	chr8	121463434	121463434	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtagttctgattggcaagaGatacattttgatacagaaaa	9	4	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121463434	C	C	121463434	3	2	57	1	0	0	0	0	1	0	0	0	10006	933	33	4	311	4	MTBP	8	121463434	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2930304	121463434	24900588	1206	64195											
FER1L6	654463	broad.mit.edu	37	chr8	125094490	125094490	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatggttccctgtgtcaccaAatgttaactgactcttgaag	8	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125094490	T	T	125094490	1	4	57	0	1	0	0	0	0	0	0	0	5872	29	1	5		5	FER1L6	8	125094490	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3631056	125094490	21269532	1207	64196											
FER1L6	654463	broad.mit.edu	37	chr8	125107433	125107433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggtggggttgctactggCatatagtgggtagaggccaa	17	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125107433	A	A	125107433	1	1	57	0	1	0	0	0	0	0	0	0	5872	725	25	3		3	FER1L6	8	125107433	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12943	125107433	21256589	1208	64197											
TATDN1	83940	broad.mit.edu	37	chr8	125527931	125527931	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctcacctgatacaagataTtttaaaaatcactcatgatt	3	9	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125527931	C	C	125527931	1	2	57	0	1	0	0	0	0	0	0	0	15710	1508	52	5		5	TATDN1	8	125527931	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	420498	125527931	20836091	1209	64198											
KIAA0196	9897	broad.mit.edu	37	chr8	126085336	126085336	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctgcatcgtgaagtaggtCctgattctgagagtctttat	10	8	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126085336	A	A	126085336	1	1	57	0	1	0	0	0	0	0	0	0	8231	870	30	3		3	KIAA0196	8	126085336	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	557405	126085336	20278686	1210	64199											
ASAP1	50807	broad.mit.edu	37	chr8	131072676	131072676	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggtttgtaacccacaggctCtaatccaccatcatgcttga	8	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131072676	G	G	131072676	1	3	57	0	1	0	0	0	0	0	0	0	1014	928	32	4		4	ASAP1	8	131072676	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4987340	131072676	15291346	1211	64200											
ASAP1	50807	broad.mit.edu	37	chr8	131073091	131073091	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaggtaagtctgagagttGgggtttgggtggcaggtccc	20	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131073091	A	A	131073091	4	1	57	1	0	0	0	0	0	1	0	0	1014	1357	47	4	475	4	ASAP1	8	131073091	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	415	131073091	15290931	1212	64201											
ASAP1	50807	broad.mit.edu	37	chr8	131216280	131216281	+	Intron	DNP	CC	AA	AA													atactctagagcacgggtccCcagtccccaggccacgaacc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	131216281	AA	AA	131216280	1	1	57	0	1	0	0	0	0	0	0	0	1014	638	22	2		2	ASAP1	8	131216280	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	143189	131216280	15147742	1213	64202											
ASAP1	50807	broad.mit.edu	37	chr8	131285694	131285694	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcatcagcaaggaactgCgggggacatgtggactagaa	16	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131285694	T	T	131285694	1	4	57	0	1	0	0	0	0	0	0	0	1014	783	27	4		4	ASAP1	8	131285694	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	69414	131285694	15078328	1214	64203											
ADCY8	114	broad.mit.edu	37	chr8	131826567	131826567	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaggaaaggcttctctGgaactcttcacaaatgaaac	10	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131826567	A	A	131826567	1	1	57	0	1	0	0	0	0	0	0	0	300	1363	47	4		4	ADCY8	8	131826567	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	540873	131826567	14537455	1215	64204											
ADCY8	114	broad.mit.edu	37	chr8	131848488	131848488	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccacttcccacaggaagttGagcacactttggactcacgg	9	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131848488	C	C	131848488	1	2	57	0	1	0	0	0	0	0	0	0	300	1305	45	4		4	ADCY8	8	131848488	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	21921	131848488	14515534	1216	64205											
ADCY8	114	broad.mit.edu	37	chr8	131896913	131896913	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatggtatgttctattctcTtgttaatttcctcaggccca	7	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131896913	A	A	131896913	3	1	57	1	0	0	0	0	1	0	0	0	300	1609	56	5	1793	5	ADCY8	8	131896913	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	48425	131896913	14467109	1217	64206											
EFR3A	23167	broad.mit.edu	37	chr8	133023168	133023168	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcatgaagacctcaggatatGatttgtaaagcctaaaaatt	8	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133023168	A	A	133023168	1	1	57	0	1	0	0	0	0	0	0	0	4998	1305	45	4		4	EFR3A	8	133023168	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1126255	133023168	13340854	1218	64207											
OC90	729330	broad.mit.edu	37	chr8	133044497	133044497	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggatgcattgtctttcggaGagcaagtcttttctccctag	11	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133044497	A	A	133044497	1	1	57	0	1	0	0	0	0	0	0	0	10909	957	33	4		4	OC90	8	133044497	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	21329	133044497	13319525	1219	64208											
TMEM71	137835	broad.mit.edu	37	chr8	133740077	133740077	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actattctcttggaaacgttCagaagctgtcaactgggact	9	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133740077	T	T	133740077	3	4	57	1	0	0	0	0	1	0	0	0	16323	835	29	4	264	4	TMEM71	8	133740077	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	695580	133740077	12623945	1220	64209											
TG	7038	broad.mit.edu	37	chr8	133925225	133925225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctaggcatctctgccctGcttaatcctccctggcccta	6	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133925225	T	T	133925225	1	4	57	0	1	0	0	0	0	0	0	0	15936	1334	46	3		3	TG	8	133925225	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	185148	133925225	12438797	1221	64210											
TG	7038	broad.mit.edu	37	chr8	134031879	134031879	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagccaggcaccagaacatCcacgtctcctggagtcagtg	11	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134031879	T	T	134031879	3	4	57	1	0	0	0	0	1	0	0	0	15936	855	30	4	6969	4	TG	8	134031879	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	106654	134031879	12332143	1222	64211											
WISP1	8840	broad.mit.edu	37	chr8	134225375	134225375	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgcccgaggtacgcaatagGagtgtgtgcacgtaagtgag	15	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134225375	C	C	134225375	3	2	57	1	0	0	0	0	1	0	0	0	17499	1174	41	4	344	4	WISP1	8	134225375	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	193496	134225375	12138647	1223	64212											
FAM135B	51059	broad.mit.edu	37	chr8	139165073	139165073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgtaggtcagcactgGggcctgtccatcctctggac	12	12	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139165073	T	T	139165073	3	4	57	1	0	0	0	0	1	0	0	0	5495	1232	43	2	2607	2	FAM135B	8	139165073	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4939698	139165073	7198949	1224	64213											
FAM135B	51059	broad.mit.edu	37	chr8	139185183	139185183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggggagagacaagcctGgaatgcagcctgcataggtc	15	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139185183	T	T	139185183	1	4	57	0	1	0	0	0	0	0	0	0	5495	1363	47	2		2	FAM135B	8	139185183	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	20110	139185183	7178839	1225	64214											
COL22A1	169044	broad.mit.edu	37	chr8	139815192	139815192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccctgaggggttgagaCcagagacaagcatcagatta	12	9	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139815192	A	A	139815192	1	1	57	0	1	0	0	0	0	0	0	0	3713	522	18	3		3	COL22A1	8	139815192	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	630009	139815192	6548830	1226	64215											
COL22A1	169044	broad.mit.edu	37	chr8	139887474	139887475	+	Intron	DNP	CC	AA	AA													caagaccagtcatggtgaagCccatgttctggaggcatggg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	139887475	AA	AA	139887474	1	1	57	0	1	0	0	0	0	0	0	0	3713	754	26	3		3	COL22A1	8	139887474	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	72282	139887474	6476548	1227	64216											
EIF2C2	27161	broad.mit.edu	37	chr8	141549447	141549447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtcagtgcagaagagcCgggtgtggtgcctcttctgc	14	10	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141549447	A	A	141549447	3	1	57	1	0	0	0	0	1	0	0	0	5046	652	23	1	454	1	EIF2C2	8	141549447	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1661973	141549447	4814575	1228	64217											
FLJ43860	389690	broad.mit.edu	37	chr8	142477708	142477708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggcctgggcgtccgcCtccccacttctgcttttacc	9	19	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142477708	A	A	142477708	1	1	57	0	1	0	0	0	0	0	0	0	5987	696	24	2		2	FLJ43860	8	142477708	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	928261	142477708	3886314	1229	64218											
PSCA	8000	broad.mit.edu	37	chr8	143763502	143763502	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctgctgccatccttgcGctgctccctgcactcggcct	10	19	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143763502	T	T	143763502	2	4	57	1	0	0	0	0	0	0	0	1	12751	1074	38	3		3	PSCA	8	143763502	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1285794	143763502	2600520	1230	64219											
CYP11B2	1585	broad.mit.edu	37	chr8	143996348	143996348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggaggatgcactgctgaGcacaaggcagccccaggcct	15	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143996348	T	T	143996348	1	4	57	0	1	0	0	0	0	0	0	0	4179	986	34	3		3	CYP11B2	8	143996348	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	232846	143996348	2367674	1231	64220											
EEF1D	1936	broad.mit.edu	37	chr8	144668878	144668878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagcagagccgcccagcCgccccacgtgcagctctcac	12	19	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144668878	A	A	144668878	1	1	57	0	1	0	0	0	0	0	0	0	4966	667	23	1		1	EEF1D	8	144668878	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	672530	144668878	1695144	1232	64221											
PUF60	22827	broad.mit.edu	37	chr8	144902887	144902887	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccattgtcactgctgccatCtgaaagacagtaaagacaga	8	11	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144902887	A	A	144902887	5	1	57	1	0	0	0	0	0	0	1	0	12932	927	32	3	1414	3	PUF60	8	144902887	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	234009	144902887	1461135	1233	64222											
SPATC1	375686	broad.mit.edu	37	chr8	145094966	145094966	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgacaggcaccctcagcaCgctgctgtctggcccagcac	10	18	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145094966	T	T	145094966	3	4	57	1	0	0	0	0	1	0	0	0	15133	536	19	4	374	4	SPATC1	8	145094966	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	192079	145094966	1269056	1234	64223											
HSF1	3297	broad.mit.edu	37	chr8	145532727	145532727	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctccaggcagcgcagGggtgcgggaggcagacctgc	18	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145532727	T	T	145532727	1	4	57	0	1	0	0	0	0	0	0	0	7462	1247	43	2		2	HSF1	8	145532727	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	437761	145532727	831295	1235	64224											
DGAT1	8694	broad.mit.edu	37	chr8	145541079	145541079	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtggaagagccagtagaaGaagatgagccagatgaggtg	17	4	0	7	rs149384210		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145541079	A	A	145541079	2	1	57	1	0	0	0	0	0	0	0	1	4497	933	33	4		4	DGAT1	8	145541079	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	8352	145541079	822943	1236	64225											
ZNF250	58500	broad.mit.edu	37	chr8	146112184	146112184	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacattagtgttaacaccttCagagattgtactgaattaaa	6	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146112184	T	T	146112184	1	4	57	0	1	0	0	0	0	0	0	0	17921	841	29	4		4	ZNF250	8	146112184	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	571105	146112184	251838	1237	64226											
DOCK8	81704	broad.mit.edu	37	chr9	312100	312100	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccgaggactttgagaagcaGaacgaggaggcccggaggac	17	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	312100	C	C	312100	3	2	57	1	0	0	0	0	1	0	0	0	4733	933	33	4	697	4	DOCK8	9	312100	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08		312100	140901331	1238	64227											
DOCK8	81704	broad.mit.edu	37	chr9	320268	320268	+	Intron	SNP	A	G	G													atcagagatggctgggctcaAaaccggaccgaacactcacg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	320268	G	G	320268	1	3	57	0	1	0	0	0	0	0	0	0	4733	29	1	5		5	DOCK8	9	320268	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	8168	320268	140893163	1239	64228	297	2									
DOCK8	81704	broad.mit.edu	37	chr9	320272	320272	+	Intron	SNP	C	T	T													gagatggctgggctcaaaacCggaccgaacactcacggaaa							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	320272	T	T	320272	1	4	57	0	1	0	0	0	0	0	0	0	4733	667	23	4		4	DOCK8	9	320272	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4	320272	140893159	1240	64229	297	2									
SMARCA2	6595	broad.mit.edu	37	chr9	2182167	2182167	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	attcgtaatcataagtaccgGagcctaggcgacctggagaa	11	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2182167	C	C	2182167	2	2	57	1	0	0	0	0	0	0	0	1	14883	1161	41	4		4	SMARCA2	9	2182167	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1861895	2182167	139031264	1241	64230											
VLDLR	7436	broad.mit.edu	37	chr9	2652662	2652662	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacttctagttatcctagctCcataaaacatggcattttta	4	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2652662	G	G	2652662	1	3	57	0	1	0	0	0	0	0	0	0	17301	870	30	4		4	VLDLR	9	2652662	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	470495	2652662	138560769	1242	64231											
CD274	29126	broad.mit.edu	37	chr9	5457304	5457304	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgttgaaggaccagctctCcctgggaaatgctgcacttc	11	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5457304	A	A	5457304	3	1	57	1	0	0	0	0	1	0	0	0	3021	855	30	3	284	3	CD274	9	5457304	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2804642	5457304	135756127	1243	64232											
KIAA2026	158358	broad.mit.edu	37	chr9	5922047	5922047	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccagaaatgcctgcagctGaggagcaaaagtgaaaactg	11	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5922047	A	A	5922047	4	1	57	1	0	0	0	0	0	1	0	0	8340	1299	45	4	2366	4	KIAA2026	9	5922047	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	464743	5922047	135291384	1244	64233											
KDM4C	23081	broad.mit.edu	37	chr9	7098900	7098901	+	Intron	INS	-	A	A													taaatcttacaggtagggttINSaaaaatcaaaggattctatt					rs144381910	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7098901	A	A	7098900	6	5	57	0	1	1	1	0	0	0	0	0	8200	1769	61	0		0	KDM4C	9	7098900	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	1176853	7098900	134114531	1245	64234											
PTPRD	5789	broad.mit.edu	37	chr9	8484287	8484287	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacgatttgtcagcacaaatGaatatgatttctcaggcttc	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8484287	A	A	8484287	3	1	57	1	0	0	0	0	1	0	0	0	12907	1294	45	4	2626	4	PTPRD	9	8484287	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1385387	8484287	132729144	1246	64235											
PTPRD	5789	broad.mit.edu	37	chr9	8507340	8507340	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttgtagaccagttcataGttggcaatggtatctgaacg	10	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8507340	C	C	8507340	3	2	57	1	0	0	0	0	1	0	0	0	12907	1020	36	4	4268	4	PTPRD	9	8507340	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	23053	8507340	132706091	1247	64236											
PTPRD	5789	broad.mit.edu	37	chr9	8523673	8523673	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagttcatccttcctatctCagctggaaaagttagcaata	6	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8523673	T	T	8523673	1	4	57	0	1	0	0	0	0	0	0	0	12907	841	29	4		4	PTPRD	9	8523673	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	16333	8523673	132689758	1248	64237											
PTPRD	5789	broad.mit.edu	37	chr9	8636819	8636819	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagacccctgtctgatcaacGggtgttcgtgtaaaccttgg	12	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8636819	C	C	8636819	2	2	57	1	0	0	0	0	0	0	0	1	12907	1103	39	4		4	PTPRD	9	8636819	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	113146	8636819	132576612	1249	64238											
SH3GL2	6456	broad.mit.edu	37	chr9	17786510	17786510	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggaagagagcttggagatGattgcaactttggtaacaag	13	4	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17786510	A	A	17786510	3	1	57	1	0	0	0	0	1	0	0	0	14364	1290	45	4	333	4	SH3GL2	9	17786510	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9149691	17786510	123426921	1250	64239											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18829643	18829643	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattatttcaggcatcaaatAcctgtattaagtttgaaatt	5	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18829643	G	G	18829643	1	3	57	0	1	0	0	0	0	0	0	0	274	406	14	5		5	ADAMTSL1	9	18829643	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1043133	18829643	122383788	1251	64240											
DENND4C	55667	broad.mit.edu	37	chr9	19326161	19326161	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccgccagagccacctcctGatgatggaaaggacctgtca	11	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19326161	C	C	19326161	3	2	57	1	0	0	0	0	1	0	0	0	4475	1290	45	4	1423	4	DENND4C	9	19326161	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	496518	19326161	121887270	1252	64241											
IFNA1	3439	broad.mit.edu	37	chr9	21441092	21441092	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aataacatctggtccaacatGaaaacaattcttattgactc	4	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21441092	T	T	21441092	1	4	57	0	1	0	0	0	0	0	0	0	7601	1305	45	3		3	IFNA1	9	21441092	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2114931	21441092	119772339	1253	64242											
CDKN2A	1029	broad.mit.edu	37	chr9	21971047	21971047	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaggcatcgcgcacgtccAgccgcgccccggcccggtgc	13	21	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21971047	T	T	21971047	3	4	57	1	0	0	0	0	1	0	0	0	3191	188	7	5	167	5	CDKN2A	9	21971047	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	529955	21971047	119242384	1254	64243											
ELAVL2	1993	broad.mit.edu	37	chr9	23754651	23754651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctattttcagtacaatcagGgtttcaccatgttggccatg	8	9	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23754651	T	T	23754651	1	4	57	0	1	0	0	0	0	0	0	0	5092	1247	43	2		2	ELAVL2	9	23754651	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1783604	23754651	117458780	1255	64244											
ACO1	48	broad.mit.edu	37	chr9	32408696	32408696	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttctgctttgtgcaaaatCtttgaacacgaatcttttta	6	7	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32408696	G	G	32408696	1	3	57	0	1	0	0	0	0	0	0	0	146	928	32	4		4	ACO1	9	32408696	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8654045	32408696	108804735	1256	64245											
AQP7	364	broad.mit.edu	37	chr9	33385393	33385394	+	Intron	INS	-	C	C													gaggagtcatccccaggctaINSccccaggaaacacccccaac					rs149447732	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33385394	C	C	33385393	6	5	57	0	1	1	1	0	0	0	0	0	833	406	14	0		0	AQP7	9	33385393	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	976697	33385393	107828038	1257	64246											
GNE	10020	broad.mit.edu	37	chr9	36227406	36227406	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaagatcgatagatttgaGaaacttcaaaatccttggaa	8	5	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36227406	A	A	36227406	3	1	57	1	0	0	0	0	1	0	0	0	6586	942	33	4	1072	4	GNE	9	36227406	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2842013	36227406	104986025	1258	64247											
GNE	10020	broad.mit.edu	37	chr9	36246001	36246001	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgacaaaaacagccattAgactgactaaagtctgagat	7	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36246001	G	G	36246001	1	3	57	0	1	0	0	0	0	0	0	0	6586	435	15	5		5	GNE	9	36246001	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	18595	36246001	104967430	1259	64248											
EXOSC3	51010	broad.mit.edu	37	chr9	37780858	37780858	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccacttcctgtatgatttCacaatctggagctaatagcc	6	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37780858	T	T	37780858	3	4	57	1	0	0	0	0	1	0	0	0	5358	838	29	4	185	4	EXOSC3	9	37780858	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1534857	37780858	103432573	1260	64249											
FAM75A3	727830	broad.mit.edu	37	chr9	40702671	40702671	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctcctggggccacaccttGacaaaggtgactttggtcag	12	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40702671	T	T	40702671	3	4	57	1	0	0	0	0	1	0	0	0	5672	1290	45	3	342	3	FAM75A3	9	40702671	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2921813	40702671	100510760	1261	64250											
FAM75A6	389730	broad.mit.edu	37	chr9	43626913	43626913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgctccagttgtctccGgagttcaggactgactggaa	13	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43626913	T	T	43626913	2	4	57	1	0	0	0	0	0	0	0	1	5674	1115	39	1		1	FAM75A6	9	43626913	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2924242	43626913	97586518	1262	64251											
TLE4	7091	broad.mit.edu	37	chr9	82333935	82333935	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactttcattcagaaaacagGaggggctgatgagagaactg	13	6	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82333935	T	T	82333935	1	4	57	0	1	0	0	0	0	0	0	0	16064	1189	41	3		3	TLE4	9	82333935	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	38707022	82333935	58879496	1263	64252											
NAA35	60560	broad.mit.edu	37	chr9	88628828	88628828	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattggtaagagcacagtttGagttaaaattggtggtgggt	14	2	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88628828	C	C	88628828	1	2	57	0	1	0	0	0	0	0	0	0	10217	1305	45	4		4	NAA35	9	88628828	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6294893	88628828	52584603	1264	64253											
C9orf79	286234	broad.mit.edu	37	chr9	90499921	90499922	+	Missense_Mutation	DNP	CC	AA	AA													aaaccagtgcctgctaaggcCcaccagccgcatgggaaatg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	90499922	AA	AA	90499921	3	1	57	1	0	0	0	0	1	0	0	0	2523	610	22	2	533	2	C9orf79	9	90499921	Missense_Mutation	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	1871093	90499921	50713510	1265	64254											
PTCH1	5727	broad.mit.edu	37	chr9	98242080	98242080	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccccacaaggtgctttttCaagctgttgcagtctgctac	8	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98242080	G	G	98242080	1	3	57	0	1	0	0	0	0	0	0	0	12836	841	29	4		4	PTCH1	9	98242080	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7742159	98242080	42971351	1266	64255											
KIAA1529	57653	broad.mit.edu	37	chr9	100071866	100071866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaacgactggatcatGgaaaaccctgttctccacag	7	15	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100071866	T	T	100071866	3	4	57	1	0	0	0	0	1	0	0	0	8310	1348	47	2	811	2	KIAA1529	9	100071866	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1829786	100071866	41141565	1267	64256											
TMOD1	7111	broad.mit.edu	37	chr9	100308482	100308482	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtagaatgcactgctgcctGcaggcctgaggcagaaggat	14	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100308482	C	C	100308482	3	2	57	1	0	0	0	0	1	0	0	0	16356	1319	46	4	142	4	TMOD1	9	100308482	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	236616	100308482	40904949	1268	64257											
GABBR2	9568	broad.mit.edu	37	chr9	101377760	101377760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaatgcaatttagacatGgctgcaggttttagacatgc	9	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101377760	T	T	101377760	1	4	57	0	1	0	0	0	0	0	0	0	6216	1363	47	2		2	GABBR2	9	101377760	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1069278	101377760	39835671	1269	64258											
INVS	27130	broad.mit.edu	37	chr9	103035340	103035340	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgaagcatgaacagttgaGaaaagatgctgctgccaagt	11	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103035340	A	A	103035340	3	1	57	1	0	0	0	0	1	0	0	0	7857	942	33	4	1808	4	INVS	9	103035340	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1657580	103035340	38178091	1270	64259											
OR13C9	286362	broad.mit.edu	37	chr9	107379756	107379756	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattatgaccacagtcagatGggctgagcaggtagagaaag	13	6	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107379756	A	A	107379756	3	1	57	1	0	0	0	0	1	0	0	0	11033	1348	47	4	229	4	OR13C9	9	107379756	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4344416	107379756	33833675	1271	64260											
TMEM38B	55151	broad.mit.edu	37	chr9	108468025	108468025	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactaacatattactggcatCttcaatctggtaagctgcca	6	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108468025	T	T	108468025	3	4	57	1	0	0	0	0	1	0	0	0	16283	913	32	4	266	4	TMEM38B	9	108468025	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1088269	108468025	32745406	1272	64261											
ZNF462	58499	broad.mit.edu	37	chr9	109690339	109690339	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgaagctgtttccatctgGgacatcactaatcactacca	6	12	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109690339	A	A	109690339	4	1	57	1	0	0	0	0	0	1	0	0	18053	1241	43	4	4152	4	ZNF462	9	109690339	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1222314	109690339	31523092	1273	64262											
CTNNAL1	8727	broad.mit.edu	37	chr9	111706259	111706259	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacctgttttgaaaaagcttGaacactggaagtaagcttta	8	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111706259	A	A	111706259	4	1	57	1	0	0	0	0	0	1	0	0	4049	1299	45	4	296	4	CTNNAL1	9	111706259	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2015920	111706259	29507172	1274	64263											
HSDL2	84263	broad.mit.edu	37	chr9	115216390	115216390	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaattgttaaggactctctCagtgatgatgttgttaaagc	10	5	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115216390	T	T	115216390	2	4	57	1	0	0	0	0	0	0	0	1	7461	813	29	4		4	HSDL2	9	115216390	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3510131	115216390	25997041	1275	64264											
SLC31A2	1318	broad.mit.edu	37	chr9	115923693	115923693	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggaagaaggtgcaggataGaggtggatggagtggattcc	20	3	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115923693	C	C	115923693	1	2	57	0	1	0	0	0	0	0	0	0	14678	957	33	4		4	SLC31A2	9	115923693	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	707303	115923693	25289738	1276	64265											
HDHD3	81932	broad.mit.edu	37	chr9	116136292	116136292	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagggtgtcctcagccccatCcaacacctgccaggtgcagg	11	16	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116136292	G	G	116136292	3	3	57	1	0	0	0	0	1	0	0	0	7091	855	30	4	416	4	HDHD3	9	116136292	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	212599	116136292	25077139	1277	64266											
C9orf43	257169	broad.mit.edu	37	chr9	116186457	116186457	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccttcagacttttgccagGtggaaagcaaaccatgctct	8	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116186457	C	C	116186457	3	2	57	1	0	0	0	0	1	0	0	0	2509	1261	44	4	694	4	C9orf43	9	116186457	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	50165	116186457	25026974	1278	64267											
RGS3	5998	broad.mit.edu	37	chr9	116277143	116277143	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggaaaaagtgaggccggGatagcccagtaaggaaaggg	16	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116277143	T	T	116277143	1	4	57	0	1	0	0	0	0	0	0	0	13415	1189	41	3		3	RGS3	9	116277143	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	90686	116277143	24936288	1279	64268											
TNC	3371	broad.mit.edu	37	chr9	117793890	117793890	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcccattgagtgcctggatCttggctgtgtagtgggtgga	17	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117793890	A	A	117793890	3	1	57	1	0	0	0	0	1	0	0	0	16393	912	32	3	767	3	TNC	9	117793890	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1516747	117793890	23419541	1280	64269											
TNC	3371	broad.mit.edu	37	chr9	117840257	117840257	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttggctgggttgcttgacAtgtcacctctgcgggagatg	14	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117840257	T	T	117840257	3	4	57	1	0	0	0	0	1	0	0	0	16393	217	8	5	4054	5	TNC	9	117840257	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	46367	117840257	23373174	1281	64270											
ASTN2	23245	broad.mit.edu	37	chr9	119858368	119858368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctccgtgtagaatgtcaGctgagtttcatcgtctgcct	10	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119858368	T	T	119858368	3	4	57	1	0	0	0	0	1	0	0	0	1069	962	34	3	3096	3	ASTN2	9	119858368	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2018111	119858368	21355063	1282	64271											
ASTN2	23245	broad.mit.edu	37	chr9	120113323	120113323	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcctgcttgctctcctTgcaccctcaacgtctacact	7	16	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120113323	G	G	120113323	1	3	57	0	1	0	0	0	0	0	0	0	1069	1827	63	5		5	ASTN2	9	120113323	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	254955	120113323	21100108	1283	64272											
PHF19	26147	broad.mit.edu	37	chr9	123623386	123623386	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttttaaactttgaatttCatccagcgtgaagtcaaata	5	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123623386	T	T	123623386	3	4	57	1	0	0	0	0	1	0	0	0	11924	835	29	4	469	4	PHF19	9	123623386	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3510063	123623386	17590045	1284	64273											
CEP110	11064	broad.mit.edu	37	chr9	123907450	123907450	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatatagaatcataatcaaGttgaaaggataaatgtgttt	7	2	2	2	rs34615236		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123907450	C	C	123907450	1	2	57	0	1	0	0	0	0	0	0	0	3275	1044	36	4		4	CEP110	9	123907450	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	284064	123907450	17305981	1285	64274											
MRRF	92399	broad.mit.edu	37	chr9	125042901	125042901	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgactgaaccaatgttctGgggagggatgtaatggaaag	15	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125042901	C	C	125042901	1	2	57	0	1	0	0	0	0	0	0	0	9944	1363	47	4		4	MRRF	9	125042901	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1135451	125042901	16170530	1286	64275											
OR1J2	26740	broad.mit.edu	37	chr9	125240299	125240299	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtggcatagtataatagaGatgttcttttgacttagaga	10	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125240299	T	T	125240299	1	4	57	0	1	0	0	0	0	0	0	0	11054	957	33	3		3	OR1J2	9	125240299	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	197398	125240299	15973132	1287	64276											
OR1N2	138882	broad.mit.edu	37	chr9	125316159	125316159	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtcttctcctatgtccgCattttctgggctgtgtttgt	9	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125316159	A	A	125316159	2	1	57	1	0	0	0	0	0	0	0	1	11064	697	25	3		3	OR1N2	9	125316159	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	75860	125316159	15897272	1288	64277											
OR1L3	26735	broad.mit.edu	37	chr9	125438141	125438141	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctccacctgcagctcccatCtcactgtggtgattctgttt	7	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125438141	T	T	125438141	3	4	57	1	0	0	0	0	1	0	0	0	11058	913	32	4	735	4	OR1L3	9	125438141	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	121982	125438141	15775290	1289	64278											
DENND1A	57706	broad.mit.edu	37	chr9	126531883	126531883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttatacatctaatgggaCcagtaaatctaacattaacc	4	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126531883	A	A	126531883	1	1	57	0	1	0	0	0	0	0	0	0	4466	522	18	3		3	DENND1A	9	126531883	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1093742	126531883	14681548	1290	64279											
GAPVD1	26130	broad.mit.edu	37	chr9	128067316	128067316	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatctgtctgtagcttatgtCtccctaccactgctttgggt	8	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128067316	G	G	128067316	1	3	57	0	1	0	0	0	0	0	0	0	6301	928	32	4		4	GAPVD1	9	128067316	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1535433	128067316	13146115	1291	64280											
PBX3	5090	broad.mit.edu	37	chr9	128692084	128692084	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctcaaacaaagcacttgtGaagcagttatgattttaaga	8	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128692084	A	A	128692084	3	1	57	1	0	0	0	0	1	0	0	0	11588	1291	45	4	681	4	PBX3	9	128692084	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	624768	128692084	12521347	1292	64281											
LRSAM1	90678	broad.mit.edu	37	chr9	130221256	130221256	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggactttctcacttggaGactcacaggggtctttcttc	11	10	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130221256	A	A	130221256	1	1	57	0	1	0	0	0	0	0	0	0	9130	957	33	4		4	LRSAM1	9	130221256	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1529172	130221256	10992175	1293	64282											
TOR1A	1861	broad.mit.edu	37	chr9	132576319	132576319	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttatctgagaaaactctctCctctttggggaaaaatgtca	7	8	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132576319	G	G	132576319	3	3	57	1	0	0	0	0	1	0	0	0	16495	864	30	4	71	4	TOR1A	9	132576319	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2355063	132576319	8637112	1294	64283											
NUP214	8021	broad.mit.edu	37	chr9	134014772	134014772	+	Silent	SNP	A	T	T													ggagttgtcgtagactatacAaaccaagtggaaatcaccat					rs144444662	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134014772	T	T	134014772	2	4	57	1	0	0	0	0	0	0	0	1	10857	117	5	5		5	NUP214	9	134014772	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1438453	134014772	7198659	1295	64284	298	2									
NUP214	8021	broad.mit.edu	37	chr9	134014781	134014781	+	Silent	SNP	G	T	T													gtagactatacaaaccaagtGgaaatcaccatcagtaagtg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134014781	T	T	134014781	2	4	57	1	0	0	0	0	0	0	0	1	10857	1335	47	2		2	NUP214	9	134014781	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9	134014781	7198650	1296	64285	298	2									
POMT1	10585	broad.mit.edu	37	chr9	134382876	134382876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctcattgtgccgccatGggagctgctctgttgatgct	11	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134382876	T	T	134382876	3	4	57	1	0	0	0	0	1	0	0	0	12340	1348	47	2	416	2	POMT1	9	134382876	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	368095	134382876	6830555	1297	64286											
UCK1	83549	broad.mit.edu	37	chr9	134406104	134406104	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacggggccggcttctggaGacactgacccacccgccccc	12	19	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134406104	A	A	134406104	1	1	57	0	1	0	0	0	0	0	0	0	17049	957	33	4		4	UCK1	9	134406104	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	23228	134406104	6807327	1298	64287											
C9orf98	158067	broad.mit.edu	37	chr9	135601315	135601315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtacatgaggtggtacctGcaagggaggaaggaaagcag	16	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135601315	T	T	135601315	1	4	57	0	1	0	0	0	0	0	0	0	2535	1334	46	3		3	C9orf98	9	135601315	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1195211	135601315	5612116	1299	64288											
VAV2	7410	broad.mit.edu	37	chr9	136804088	136804088	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggacctgcctgcacctcccgGacatgagggtgcagaaatcc	12	14	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136804088	A	A	136804088	1	1	57	0	1	0	0	0	0	0	0	0	17259	1189	41	4		4	VAV2	9	136804088	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1202773	136804088	4409343	1300	64289											
NOTCH1	4851	broad.mit.edu	37	chr9	139395166	139395166	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggtctcgcccgtgcggtcTgtctggttgtgcaggctggc	17	12	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139395166	G	G	139395166	2	3	57	1	0	0	0	0	0	0	0	1	10642	1567	55	5		5	NOTCH1	9	139395166	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2591078	139395166	1818265	1301	64290											
PNPLA7	375775	broad.mit.edu	37	chr9	140374733	140374733	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggttctgaagagagggctctCcccagctccaccggccctcc	11	17	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140374733	T	T	140374733	1	4	57	0	1	0	0	0	0	0	0	0	12265	870	30	4		4	PNPLA7	9	140374733	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	979567	140374733	838698	1302	64291											
EHMT1	79813	broad.mit.edu	37	chr9	140652427	140652427	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctctggactccctggatCtccgagtcaaaggaattctg	9	11	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140652427	G	G	140652427	3	3	57	1	0	0	0	0	1	0	0	0	5023	913	32	4	1499	4	EHMT1	9	140652427	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	277694	140652427	561004	1303	64292											
CACNA1B	774	broad.mit.edu	37	chr9	140773555	140773555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcgccaactgcatcgtgCtggccctggagcagcacctc	10	16	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140773555	A	A	140773555	3	1	57	1	0	0	0	0	1	0	0	0	2565	796	28	3	340	3	CACNA1B	9	140773555	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	121128	140773555	439876	1304	64293											
CACNA1B	774	broad.mit.edu	37	chr9	140818801	140818801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccttccttcctccttccCtccctccttccctccctctt	0	25	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140818801	A	A	140818801	1	1	57	0	1	0	0	0	0	0	0	0	2565	696	24	2		2	CACNA1B	9	140818801	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	45246	140818801	394630	1305	64294											
PITRM1	10531	broad.mit.edu	37	chr10	3197873	3197873	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctgtgcctgcttctcgtGatacttgtcatctggcctca	8	14	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3197873	A	A	3197873	3	1	57	1	0	0	0	0	1	0	0	0	12048	1290	45	4	1638	4	PITRM1	10	3197873	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08		3197873	132336874	1306	64295											
RBM17	84991	broad.mit.edu	37	chr10	6148146	6148146	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtgggtttgcaaggagAccagatccagattctgatga	13	7	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6148146	T	T	6148146	3	4	57	1	0	0	0	0	1	0	0	0	13227	272	10	5	464	5	RBM17	10	6148146	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2950273	6148146	129386601	1307	64296											
ITIH2	3698	broad.mit.edu	37	chr10	7773947	7773947	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatcaaatagagagcgttatCacggcgacttcggtacttcc	10	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7773947	T	T	7773947	2	4	57	1	0	0	0	0	0	0	0	1	7974	816	29	4		4	ITIH2	10	7773947	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1625801	7773947	127760800	1308	64297											
CDC123	8872	broad.mit.edu	37	chr10	12238445	12238445	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggagggagtgtgtcgagaggGaagtacatcagcaattgtct	16	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12238445	C	C	12238445	1	2	57	0	1	0	0	0	0	0	0	0	3085	1189	41	4		4	CDC123	10	12238445	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4464498	12238445	123296302	1309	64298											
PHYH	5264	broad.mit.edu	37	chr10	13336600	13336600	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttttcaaactcattcctaGaaaatttaatttgcaaatga	3	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13336600	A	A	13336600	1	1	57	0	1	0	0	0	0	0	0	0	11959	957	33	4		4	PHYH	10	13336600	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1098155	13336600	122198147	1310	64299											
SEPHS1	22929	broad.mit.edu	37	chr10	13380835	13380835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggaagtcattagcatcCaaaaataaaacgggaaagcc	9	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13380835	A	A	13380835	1	1	57	0	1	0	0	0	0	0	0	0	14167	609	21	2		2	SEPHS1	10	13380835	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	44235	13380835	122153912	1311	64300											
FAM107B	83641	broad.mit.edu	37	chr10	14816143	14816143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgagaacgcccgcaatgCcttattcagtaaggttaaat	9	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14816143	A	A	14816143	1	1	57	0	1	0	0	0	0	0	0	0	5436	754	26	3		3	FAM107B	10	14816143	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1435308	14816143	120718604	1312	64301											
CDNF	441549	broad.mit.edu	37	chr10	14861885	14861885	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaagcatgagaccaaatatGatgcattcccagttatcctt	6	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14861885	A	A	14861885	1	1	57	0	1	0	0	0	0	0	0	0	3198	1305	45	4		4	CDNF	10	14861885	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	45742	14861885	120672862	1313	64302											
MEIG1	644890	broad.mit.edu	37	chr10	15014503	15014503	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgtttgtactctggttcttGatgtgcaggtagatcgttgg	13	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15014503	C	C	15014503	1	2	57	0	1	0	0	0	0	0	0	0	9559	1305	45	4		4	MEIG1	10	15014503	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	152618	15014503	120520244	1314	64303											
CUBN	8029	broad.mit.edu	37	chr10	16995970	16995970	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatggaaaacaacagtgactCctcagttggacaatggcagg	11	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16995970	A	A	16995970	1	1	57	0	1	0	0	0	0	0	0	0	4084	870	30	3		3	CUBN	10	16995970	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1981467	16995970	118538777	1315	64304											
CUBN	8029	broad.mit.edu	37	chr10	17082985	17082985	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattctaacttgacacatctCccttgatctgaaaaagcagt	6	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17082985	A	A	17082985	1	1	57	0	1	0	0	0	0	0	0	0	4084	870	30	3		3	CUBN	10	17082985	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	87015	17082985	118451762	1316	64305											
TRDMT1	1787	broad.mit.edu	37	chr10	17195666	17195666	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacccaagataactaaaaaAgtaatgtgcaactagattta	5	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17195666	C	C	17195666	1	2	57	0	1	0	0	0	0	0	0	0	16591	87	3	5		5	TRDMT1	10	17195666	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	112681	17195666	118339081	1317	64306											
TRDMT1	1787	broad.mit.edu	37	chr10	17201212	17201212	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagaaaatatcgtagccttGaatttggaatgccaagctgt	9	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17201212	T	T	17201212	4	4	57	1	0	0	0	0	0	1	0	0	16591	1294	45	3	719	3	TRDMT1	10	17201212	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5546	17201212	118333535	1318	64307											
C10orf140	387640	broad.mit.edu	37	chr10	21806653	21806653	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtttttcagcagatctgtGaagacttgggagagggcaaa	13	5	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21806653	T	T	21806653	3	4	57	1	0	0	0	0	1	0	0	0	1606	1281	45	3	2631	3	C10orf140	10	21806653	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4605441	21806653	113728094	1319	64308											
BMI1	648	broad.mit.edu	37	chr10	22615539	22615539	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcatgcgtatttcacagtTcgacctggaatttgaaaact	7	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22615539	G	G	22615539	1	3	57	0	1	0	0	0	0	0	0	0	1461	1798	62	5		5	BMI1	10	22615539	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	808886	22615539	112919208	1320	64309											
SPAG6	9576	broad.mit.edu	37	chr10	22676710	22676710	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaactctgtagtggatgcTatatagtgttttgttgttgt	11	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22676710	A	A	22676710	1	1	57	0	1	0	0	0	0	0	0	0	15098	1537	53	5		5	SPAG6	10	22676710	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	61171	22676710	112858037	1321	64310											
PIP4K2A	5305	broad.mit.edu	37	chr10	22828728	22828728	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcccccagggaacaagcgtCactaaagggctttgaatggc	12	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22828728	A	A	22828728	1	1	57	0	1	0	0	0	0	0	0	0	12031	841	29	3		3	PIP4K2A	10	22828728	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	152018	22828728	112706019	1322	64311											
ARMC3	219681	broad.mit.edu	37	chr10	23326112	23326112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagacttgtgtatttcacCttcaatcaaggtgtgcaatt	8	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23326112	A	A	23326112	1	1	57	0	1	0	0	0	0	0	0	0	956	696	24	2		2	ARMC3	10	23326112	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	497384	23326112	112208635	1323	64312											
MSRB2	22921	broad.mit.edu	37	chr10	23409755	23409755	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagaggttttgcatcaaCagtgtggctttgaagttcaa	12	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23409755	T	T	23409755	2	4	57	1	0	0	0	0	0	0	0	1	9982	477	17	4		4	MSRB2	10	23409755	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	83643	23409755	112124992	1324	64313											
KIAA1217	56243	broad.mit.edu	37	chr10	24762154	24762154	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgatcccttgttttcttttCagatgcagagagaacttgtt	8	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24762154	G	G	24762154	1	3	57	0	1	0	0	0	0	0	0	0	8286	841	29	4		4	KIAA1217	10	24762154	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1352399	24762154	110772593	1325	64314											
GPR158	57512	broad.mit.edu	37	chr10	25464427	25464427	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgttggcgccagccgCgacccccaaggacggccgga	16	15	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25464427	T	T	25464427	2	4	57	1	0	0	0	0	0	0	0	1	6728	755	27	4		4	GPR158	10	25464427	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	702273	25464427	110070320	1326	64315											
MYO3A	53904	broad.mit.edu	37	chr10	26443682	26443682	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggtctccttagggcgacaCtggagaagccacacgtcatg	12	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26443682	G	G	26443682	3	3	57	1	0	0	0	0	1	0	0	0	10170	565	20	4	2813	4	MYO3A	10	26443682	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	979255	26443682	109091065	1327	64316											
MYO3A	53904	broad.mit.edu	37	chr10	26500758	26500758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgacacttgggccctgGgtttcacttgcaggtgctgg	15	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26500758	T	T	26500758	1	4	57	0	1	0	0	0	0	0	0	0	10170	1247	43	2		2	MYO3A	10	26500758	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	57076	26500758	109033989	1328	64317											
APBB1IP	54518	broad.mit.edu	37	chr10	26802497	26802497	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagaccatgaaaatgttGttgaagtcttatcagactgg	10	5	2	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26802497	T	T	26802497	3	4	57	1	0	0	0	0	1	0	0	0	762	1377	48	3	743	3	APBB1IP	10	26802497	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	301739	26802497	108732250	1329	64318											
ANKRD26	22852	broad.mit.edu	37	chr10	27317875	27317875	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcattatctttttcaagcCtgaaatgtatattttaaaat	5	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27317875	A	A	27317875	5	1	57	1	0	0	0	0	0	0	1	0	654	695	24	2	1286	2	ANKRD26	10	27317875	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	515378	27317875	108216872	1330	64319											
ARMC4	55130	broad.mit.edu	37	chr10	28276388	28276388	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcgtgacagctgcccaaaGctcctaattttaatttgtgg	9	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28276388	C	C	28276388	3	2	57	1	0	0	0	0	1	0	0	0	957	962	34	4	2897	4	ARMC4	10	28276388	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	958513	28276388	107258359	1331	64320											
WAC	51322	broad.mit.edu	37	chr10	28884967	28884967	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcacagaaaacagaaagaAaaggtatgccattattacta	7	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28884967	C	C	28884967	3	2	57	1	0	0	0	0	1	0	0	0	17374	15	1	5	942	5	WAC	10	28884967	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	608579	28884967	106649780	1332	64321											
WAC	51322	broad.mit.edu	37	chr10	28905115	28905115	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttctagtagccagagaagtCcatcacctggtcccaatcat	7	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28905115	G	G	28905115	3	3	57	1	0	0	0	0	1	0	0	0	17374	855	30	4	1616	4	WAC	10	28905115	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	20148	28905115	106629632	1333	64322											
SVIL	6840	broad.mit.edu	37	chr10	29762821	29762821	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcagcgccgacgtgcccttCtcactcacggtggagtgccg	12	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29762821	T	T	29762821	2	4	57	1	0	0	0	0	0	0	0	1	15539	912	32	4		4	SVIL	10	29762821	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	857706	29762821	105771926	1334	64323											
SVIL	6840	broad.mit.edu	37	chr10	29821030	29821030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatagcgtcttggtttcCgggaccctctctcccgttcc	8	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29821030	A	A	29821030	3	1	57	1	0	0	0	0	1	0	0	0	15539	652	23	1	4854	1	SVIL	10	29821030	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	58209	29821030	105713717	1335	64324											
ANKRD30A	91074	broad.mit.edu	37	chr10	37430931	37430931	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtcctgcaaaagaaacatCtgagaaatttacgtggccag	10	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37430931	A	A	37430931	3	1	57	1	0	0	0	0	1	0	0	0	658	913	32	3	964	3	ANKRD30A	10	37430931	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7609901	37430931	98103816	1336	64325											
ANKRD30A	91074	broad.mit.edu	37	chr10	37434003	37434003	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtattgtgtattattgatGttattctctaaaaatattaa	7	2	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37434003	A	A	37434003	1	1	57	0	1	0	0	0	0	0	0	0	658	1392	48	4		4	ANKRD30A	10	37434003	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3072	37434003	98100744	1337	64326											
ANKRD30A	91074	broad.mit.edu	37	chr10	37441084	37441084	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttttttttaatattagTattgcatgatatgaaaacat	5	2	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37441084	A	A	37441084	1	1	57	0	1	0	0	0	0	0	0	0	658	1653	57	5		5	ANKRD30A	10	37441084	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	7081	37441084	98093663	1338	64327											
ZNF248	57209	broad.mit.edu	37	chr10	38107609	38107609	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctactcacaaagaccaaTttttggatataatgcagcaa	8	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38107609	C	C	38107609	1	2	57	0	1	0	0	0	0	0	0	0	17919	1508	52	5		5	ZNF248	10	38107609	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	666525	38107609	97427138	1339	64328											
ZNF248	57209	broad.mit.edu	37	chr10	38121846	38121847	+	Frame_Shift_Ins	INS	-	A	A													gcccgaaatatttttcaaatINStcatttcacatgagtcacat							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38121847	A	A	38121846	7	5	57	1	0	1	1	0	0	0	0	0	17919	1493	52	0	1306	0	ZNF248	10	38121846	Frame_Shift_Ins	INS	-	TCGA-17-Z026-01A-01W-0746-08	14237	38121846	97412901	1340	64329											
ZNF25	219749	broad.mit.edu	37	chr10	38241154	38241154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcctgacactcatagggCttctcccctgtgtgttttct	7	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38241154	A	A	38241154	3	1	57	1	0	0	0	0	1	0	0	0	17920	796	28	3	102	3	ZNF25	10	38241154	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	119308	38241154	97293593	1341	64330											
ZNF239	8187	broad.mit.edu	37	chr10	44053086	44053086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagttacagtcaatgggatCcaaagattcttttaactggc	9	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44053086	A	A	44053086	3	1	57	1	0	0	0	0	1	0	0	0	17917	855	30	3	938	3	ZNF239	10	44053086	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5811932	44053086	91481661	1342	64331											
ALOX5	240	broad.mit.edu	37	chr10	45940953	45940953	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgtccatgtctgggccctCagctgttcctgggcatgtac	12	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45940953	A	A	45940953	1	1	57	0	1	0	0	0	0	0	0	0	540	841	29	3		3	ALOX5	10	45940953	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1887867	45940953	89593794	1343	64332											
RBP3	5949	broad.mit.edu	37	chr10	48387868	48387868	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggtccttggcattctcagGgatatgggctgccttcaggt	14	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48387868	A	A	48387868	3	1	57	1	0	0	0	0	1	0	0	0	13265	1232	43	4	749	4	RBP3	10	48387868	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2446915	48387868	87146879	1344	64333											
CHAT	1103	broad.mit.edu	37	chr10	50863415	50863415	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttaaaccccgcgctgcctCtgtgttctgttgacaggctt	9	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50863415	T	T	50863415	1	4	57	0	1	0	0	0	0	0	0	0	3344	928	32	4		4	CHAT	10	50863415	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2475547	50863415	84671332	1345	64334											
FAM21A	387680	broad.mit.edu	37	chr10	51877907	51877907	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttaagttttttgaccacaGaaaataaatggcccatttgt	6	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51877907	T	T	51877907	1	4	57	0	1	0	0	0	0	0	0	0	5587	957	33	3		3	FAM21A	10	51877907	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1014492	51877907	83656840	1346	64335											
A1CF	29974	broad.mit.edu	37	chr10	52601788	52601788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaacatttatatttataCgtttgtacttctgaatgtat	5	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52601788	A	A	52601788	1	1	57	0	1	0	0	0	0	0	0	0	2	551	19	3		3	A1CF	10	52601788	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	723881	52601788	82932959	1347	64336											
PCDH15	65217	broad.mit.edu	37	chr10	55568648	55568648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaagctgattctgcactgCcctcttcagggatatcttga	9	12	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55568648	A	A	55568648	3	1	57	1	0	0	0	0	1	0	0	0	11605	739	26	3	754	3	PCDH15	10	55568648	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2966860	55568648	79966099	1348	64337											
PCDH15	65217	broad.mit.edu	37	chr10	55581695	55581695	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaactccccttgttttgttCagatgtgatttccatatttg	6	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55581695	T	T	55581695	3	4	57	1	0	0	0	0	1	0	0	0	11605	835	29	4	1686	4	PCDH15	10	55581695	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13047	55581695	79953052	1349	64338											
BICC1	80114	broad.mit.edu	37	chr10	60562756	60562756	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgatgatgataaacatgcAtagtaaatgtggcatgtagg	12	4	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60562756	T	T	60562756	1	4	57	0	1	0	0	0	0	0	0	0	1433	232	8	5		5	BICC1	10	60562756	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	4981061	60562756	74971991	1350	64339											
ANK3	288	broad.mit.edu	37	chr10	61833745	61833745	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacatctggagacactgcCgacttatgttcaaacagacc	8	11	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61833745	A	A	61833745	2	1	57	1	0	0	0	0	0	0	0	1	622	639	23	1		1	ANK3	10	61833745	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1270989	61833745	73701002	1351	64340											
ARID5B	84159	broad.mit.edu	37	chr10	63852624	63852624	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaggaatttttacatcaccGacaaattctcagcagctgta	7	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63852624	A	A	63852624	2	1	57	1	0	0	0	0	0	0	0	1	924	1045	37	4		4	ARID5B	10	63852624	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2018879	63852624	71682123	1352	64341											
CTNNA3	29119	broad.mit.edu	37	chr10	67679958	67679959	+	3'UTR	DNP	CC	AA	AA													tgcttttgttgatttagcgcCcaatattttatgttatttgt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	67679959	AA	AA	67679958	1	1	57	0	1	0	0	0	0	0	0	0	4048	638	22	2		2	CTNNA3	10	67679958	3'UTR	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	3827334	67679958	67854789	1353	64342											
CTNNA3	29119	broad.mit.edu	37	chr10	68013471	68013471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcatgtgtgtttctgtgtGtgtgcacgttgtgtgtctgt	14	5	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68013471	T	T	68013471	1	4	57	0	1	0	0	0	0	0	0	0	4048	1392	48	3		3	CTNNA3	10	68013471	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	333513	68013471	67521276	1354	64343											
CTNNA3	29119	broad.mit.edu	37	chr10	68535301	68535301	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctgcaaagaagaaaaaacGacataagcaatggtatcaat	8	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68535301	A	A	68535301	1	1	57	0	1	0	0	0	0	0	0	0	4048	1073	37	4		4	CTNNA3	10	68535301	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	521830	68535301	66999446	1355	64344											
HERC4	26091	broad.mit.edu	37	chr10	69785392	69785392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtagaattatggcccaaCtgaccataccctccagctcc	7	15	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69785392	A	A	69785392	3	1	57	1	0	0	0	0	1	0	0	0	7127	564	20	3	2430	3	HERC4	10	69785392	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1250091	69785392	65749355	1356	64345											
MYPN	84665	broad.mit.edu	37	chr10	69935135	69935135	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctcaaccagtgaatgatGataacattcgtgaaactaag	7	9	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69935135	A	A	69935135	3	1	57	1	0	0	0	0	1	0	0	0	10192	1290	45	4	2662	4	MYPN	10	69935135	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	149743	69935135	65599612	1357	64346											
MYPN	84665	broad.mit.edu	37	chr10	69956533	69956533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacaggcttgagccaccaCacctggccccctctcccttt	6	18	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69956533	A	A	69956533	1	1	57	0	1	0	0	0	0	0	0	0	10192	493	17	3		3	MYPN	10	69956533	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	21398	69956533	65578214	1358	64347											
KIAA1279	26128	broad.mit.edu	37	chr10	70776073	70776073	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaaagcatcctgaggcCgcccaggaaatagaagttga	12	8	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70776073	T	T	70776073	2	4	57	1	0	0	0	0	0	0	0	1	8291	639	23	4		4	KIAA1279	10	70776073	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	819540	70776073	64758674	1359	64348											
HKDC1	80201	broad.mit.edu	37	chr10	71010295	71010295	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctctctctgcagctctttGatcacattgtgcagtgcatc	7	13	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71010295	C	C	71010295	3	2	57	1	0	0	0	0	1	0	0	0	7260	1290	45	4	1769	4	HKDC1	10	71010295	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	234222	71010295	64524452	1360	64349											
UNC5B	219699	broad.mit.edu	37	chr10	73048713	73048713	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccctttatttcccttgacAgataagaaaactctaagcga	5	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73048713	T	T	73048713	5	4	57	1	0	0	0	0	0	0	1	0	17118	202	7	5	1095	5	UNC5B	10	73048713	Splice_Site	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2038418	73048713	62486034	1361	64350											
UNC5B	219699	broad.mit.edu	37	chr10	73053062	73053062	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtggcaaagagctgccCtccacctcccgggccctggg	13	16	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73053062	T	T	73053062	1	4	57	0	1	0	0	0	0	0	0	0	17118	696	24	4		4	UNC5B	10	73053062	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4349	73053062	62481685	1362	64351											
TTC18	118491	broad.mit.edu	37	chr10	75107924	75107924	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctgattaccttagcacttGatctaggagtttctaagggt	9	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75107924	C	C	75107924	4	2	57	1	0	0	0	0	0	1	0	0	16811	1294	45	4	3042	4	TTC18	10	75107924	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2054862	75107924	60426823	1363	64352											
ZMYND17	118490	broad.mit.edu	37	chr10	75184307	75184307	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagatgtccagttatgatCtatttaaatcccgccgtcca	6	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75184307	G	G	75184307	1	3	57	0	1	0	0	0	0	0	0	0	17835	928	32	4		4	ZMYND17	10	75184307	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	76383	75184307	60350440	1364	64353											
USP54	159195	broad.mit.edu	37	chr10	75280781	75280781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacctctcaaagccgtcactCctccctgaaagggccagcac	8	17	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75280781	A	A	75280781	3	1	57	1	0	0	0	0	1	0	0	0	17212	854	30	3	2715	3	USP54	10	75280781	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	96474	75280781	60253966	1365	64354											
DUSP13	51207	broad.mit.edu	37	chr10	76868738	76868738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctctccacgtccccaccCccatgccccttggccagcta	6	22	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76868738	A	A	76868738	1	1	57	0	1	0	0	0	0	0	0	0	4853	638	22	2		2	DUSP13	10	76868738	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1587957	76868738	58666009	1366	64355											
SH2D4B	387694	broad.mit.edu	37	chr10	82331394	82331394	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagcccctgagaccactggGgctgacctctggtttggatc	12	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82331394	A	A	82331394	1	1	57	0	1	0	0	0	0	0	0	0	14349	1247	43	4		4	SH2D4B	10	82331394	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5462656	82331394	53203353	1367	64356											
SH2D4B	387694	broad.mit.edu	37	chr10	82369322	82369322	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccatggtagcaccatttttCtgggccctgtgccagatgat	10	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82369322	T	T	82369322	1	4	57	0	1	0	0	0	0	0	0	0	14349	928	32	4		4	SH2D4B	10	82369322	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	37928	82369322	53165425	1368	64357											
NRG3	10718	broad.mit.edu	37	chr10	83992194	83992194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatgttgtccttgggataCcctcctgacatccccactcc	7	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83992194	A	A	83992194	1	1	57	0	1	0	0	0	0	0	0	0	10744	522	18	3		3	NRG3	10	83992194	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1622872	83992194	51542553	1369	64358											
NRG3	10718	broad.mit.edu	37	chr10	84446265	84446265	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgtgctatacttttatagGactgacagtacaggaagttt	9	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84446265	T	T	84446265	1	4	57	0	1	0	0	0	0	0	0	0	10744	1189	41	3		3	NRG3	10	84446265	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	454071	84446265	51088482	1370	64359											
GRID1	2894	broad.mit.edu	37	chr10	87676135	87676135	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgccatccccctggggccTgctctggctgccttagctgc	11	17	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87676135	A	A	87676135	1	1	57	0	1	0	0	0	0	0	0	0	6837	1595	55	5		5	GRID1	10	87676135	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3229870	87676135	47858612	1371	64360											
LDB3	11155	broad.mit.edu	37	chr10	88441072	88441072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgcgcccaggcgctctGggcttcaggctgcggggctc	17	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88441072	T	T	88441072	1	4	57	0	1	0	0	0	0	0	0	0	8769	1363	47	2		2	LDB3	10	88441072	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	764937	88441072	47093675	1372	64361											
IFIT5	24138	broad.mit.edu	37	chr10	91177635	91177635	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctggcactgaagcttcaaGatgtacatgcagaagctgaa	10	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91177635	C	C	91177635	3	2	57	1	0	0	0	0	1	0	0	0	7595	942	33	4	685	4	IFIT5	10	91177635	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2736563	91177635	44357112	1373	64362											
HTR7	3363	broad.mit.edu	37	chr10	92508816	92508816	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacccacagtgggatgcagcTgcaggaagtgccacagatga	13	11	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92508816	A	A	92508816	3	1	57	1	0	0	0	0	1	0	0	0	7522	1580	55	5	380	5	HTR7	10	92508816	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1331181	92508816	43025931	1374	64363											
PDE6C	5146	broad.mit.edu	37	chr10	95394456	95394456	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtaatatcctgtgaattTatgattatttcaaactaaaa	4	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95394456	A	A	95394456	1	1	57	0	1	0	0	0	0	0	0	0	11741	1769	61	5		5	PDE6C	10	95394456	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2885640	95394456	40140291	1375	64364											
PLCE1	51196	broad.mit.edu	37	chr10	96005702	96005702	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtgtttctttccttaaGgtttataattggagatttgt	9	3	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96005702	T	T	96005702	5	4	57	1	0	0	0	0	0	0	1	0	12129	1014	35	2	2732	2	PLCE1	10	96005702	Splice_Site	SNP	G	TCGA-17-Z026-01A-01W-0746-08	611246	96005702	39529045	1376	64365											
PLCE1	51196	broad.mit.edu	37	chr10	96014176	96014176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaacatttctaacaaaaCtctttgtcctaaccagacaa	3	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96014176	T	T	96014176	1	4	57	0	1	0	0	0	0	0	0	0	12129	580	20	4		4	PLCE1	10	96014176	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8474	96014176	39520571	1377	64366											
PLCE1	51196	broad.mit.edu	37	chr10	96018495	96018495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaattggagcaagtctgGtgggacagaatcacaacagt	12	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96018495	T	T	96018495	1	4	57	0	1	0	0	0	0	0	0	0	12129	1276	44	3		3	PLCE1	10	96018495	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4319	96018495	39516252	1378	64367											
NOC3L	64318	broad.mit.edu	37	chr10	96093972	96093972	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaatatttcgtgaaatccaGaggcgattcagtagcaactt	8	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96093972	C	C	96093972	3	2	57	1	0	0	0	0	1	0	0	0	10609	933	33	4	41	4	NOC3L	10	96093972	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	75477	96093972	39440775	1379	64368											
PIK3AP1	118788	broad.mit.edu	37	chr10	98392715	98392715	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacaagctagcagggcagtGaagagagctggtcttccttt	12	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98392715	A	A	98392715	1	1	57	0	1	0	0	0	0	0	0	0	12003	1305	45	4		4	PIK3AP1	10	98392715	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2298743	98392715	37142032	1380	64369											
C10orf12	26148	broad.mit.edu	37	chr10	98708959	98708959	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcccacggctgcaactactCagaaccctgtgctcagcaaa	7	16	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98708959	G	G	98708959	3	3	57	1	0	0	0	0	1	0	0	0	1600	827	29	4		4	C10orf12	10	98708959	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	316244	98708959	36825788	1381	64370											
SFRP5	6425	broad.mit.edu	37	chr10	99531239	99531239	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcacgggtagatgggccggtCgagacagacgggcgcaaaga	18	9	0	4	rs145515400	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99531239	T	T	99531239	3	4	57	1	0	0	0	0	1	0	0	0	14277	884	31	4	613	4	SFRP5	10	99531239	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	822280	99531239	36003508	1382	64371											
DNMBP	23268	broad.mit.edu	37	chr10	101715478	101715478	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctcggacaatatccttctCagagttaaagtccatgattg	7	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101715478	G	G	101715478	3	3	57	1	0	0	0	0	1	0	0	0	4714	835	29	4	3036	4	DNMBP	10	101715478	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2184239	101715478	33819269	1383	64372											
DNMBP	23268	broad.mit.edu	37	chr10	101715910	101715910	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaaggtcggggtactgttCtgagtgcgggtggctccctc	16	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101715910	T	T	101715910	3	4	57	1	0	0	0	0	1	0	0	0	4714	922	32	4	3468	4	DNMBP	10	101715910	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	432	101715910	33818837	1384	64373											
PAX2	5076	broad.mit.edu	37	chr10	102562535	102562535	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggataggggatcttctttGaaatggatggtgtctaatca	12	4	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102562535	C	C	102562535	1	2	57	0	1	0	0	0	0	0	0	0	11573	1305	45	4		4	PAX2	10	102562535	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	846625	102562535	32972212	1385	64374											
PAX2	5076	broad.mit.edu	37	chr10	102562590	102562590	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccctgctcactagattaaGatctgcttttacatcctaga	5	11	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102562590	C	C	102562590	1	2	57	0	1	0	0	0	0	0	0	0	11573	957	33	4		4	PAX2	10	102562590	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	55	102562590	32972157	1386	64375											
PAX2	5076	broad.mit.edu	37	chr10	102566380	102566380	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtgaggagggagctttcTgcttgcagaagtagaaagga	16	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102566380	G	G	102566380	1	3	57	0	1	0	0	0	0	0	0	0	11573	1595	55	5		5	PAX2	10	102566380	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3790	102566380	32968367	1387	64376											
LDB1	8861	broad.mit.edu	37	chr10	103870535	103870535	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcctcccctaccaatctaGatatcccctggcactcccag	5	18	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103870535	C	C	103870535	1	2	57	0	1	0	0	0	0	0	0	0	8767	957	33	4		4	LDB1	10	103870535	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1304155	103870535	31664212	1388	64377											
NFKB2	4791	broad.mit.edu	37	chr10	104157429	104157429	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccagtcatctcccagccCatccatgacagcagtgagta	8	14	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104157429	T	T	104157429	2	4	57	1	0	0	0	0	0	0	0	1	10471	581	21	4		4	NFKB2	10	104157429	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	286894	104157429	31377318	1389	64378											
TRIM8	81603	broad.mit.edu	37	chr10	104414408	104414408	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccacccaaatgtccctgcAgaagatgctcatgaagcagc	8	14	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104414408	G	G	104414408	5	3	57	1	0	0	0	0	0	0	1	0	16673	202	7	5	575	5	TRIM8	10	104414408	Splice_Site	SNP	A	TCGA-17-Z026-01A-01W-0746-08	256979	104414408	31120339	1390	64379											
PDCD11	22984	broad.mit.edu	37	chr10	105193765	105193765	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagacatccgggggagaattCccttattgctcacttctctg	9	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105193765	T	T	105193765	3	4	57	1	0	0	0	0	1	0	0	0	11711	855	30	4	3621	4	PDCD11	10	105193765	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	779357	105193765	30340982	1391	64380											
SLK	9748	broad.mit.edu	37	chr10	105781740	105781740	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttgtaagcagaggaggagGagagcttaaatctgcctggg	15	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105781740	T	T	105781740	1	4	57	0	1	0	0	0	0	0	0	0	14862	1189	41	3		3	SLK	10	105781740	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	587975	105781740	29753007	1392	64381											
COL17A1	1308	broad.mit.edu	37	chr10	105819326	105819326	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacactttgagtagcaaggtCtccgaagacaatgaaatgaa	9	8	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105819326	G	G	105819326	1	3	57	0	1	0	0	0	0	0	0	0	3706	928	32	4		4	COL17A1	10	105819326	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	37586	105819326	29715421	1393	64382											
COL17A1	1308	broad.mit.edu	37	chr10	105835931	105835931	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaatggaagtccataaaaGaaatgaaggaggagtgggga	15	2	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105835931	A	A	105835931	1	1	57	0	1	0	0	0	0	0	0	0	3706	957	33	4		4	COL17A1	10	105835931	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	16605	105835931	29698816	1394	64383											
C10orf79	80217	broad.mit.edu	37	chr10	105945885	105945885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagataccggtatgttcctgCcaatcaaagaaaataaccac	6	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105945885	A	A	105945885	1	1	57	0	1	0	0	0	0	0	0	0	1629	754	26	3		3	C10orf79	10	105945885	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	109954	105945885	29588862	1395	64384											
C10orf79	80217	broad.mit.edu	37	chr10	105971899	105971899	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaaatgacccatcttctaGaggtaatttcaccgacctgt	6	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105971899	C	C	105971899	3	2	57	1	0	0	0	0	1	0	0	0	1629	933	33	4	4532	4	C10orf79	10	105971899	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	26014	105971899	29562848	1396	64385											
GSTO2	119391	broad.mit.edu	37	chr10	106039063	106039063	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaagcttcgctgccttttCaggcagaacaggaactggaa	10	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106039063	T	T	106039063	1	4	57	0	1	0	0	0	0	0	0	0	6909	841	29	4		4	GSTO2	10	106039063	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	67164	106039063	29495684	1397	64386											
SORCS3	22986	broad.mit.edu	37	chr10	106826570	106826571	+	Intron	DNP	CC	AA	AA													ctttactactcaccttagccCccagtccttcccttcatctt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	106826571	AA	AA	106826570	1	1	57	0	1	0	0	0	0	0	0	0	15046	638	22	2		2	SORCS3	10	106826570	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	787507	106826570	28708177	1398	64387											
SORCS3	22986	broad.mit.edu	37	chr10	107005426	107005426	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagattgcagttcatggtAagccctgaaaattgttctgt	10	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107005426	T	T	107005426	1	4	57	0	1	0	0	0	0	0	0	0	15046	377	13	5		5	SORCS3	10	107005426	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	178856	107005426	28529321	1399	64388											
SORCS1	114815	broad.mit.edu	37	chr10	108459118	108459118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttggaccgctgcgaacaCctgattctcatcggtgctga	10	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108459118	A	A	108459118	3	1	57	1	0	0	0	0	1	0	0	0	15044	507	18	3	2545	3	SORCS1	10	108459118	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1453692	108459118	27075629	1400	64389											
PDCD4	27250	broad.mit.edu	37	chr10	112653897	112653897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctggagacatatctgaaGctgaacattgccttaaggaa	9	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112653897	T	T	112653897	3	4	57	1	0	0	0	0	1	0	0	0	11715	971	34	3	1083	3	PDCD4	10	112653897	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4194779	112653897	22880850	1401	64390											
GPAM	57678	broad.mit.edu	37	chr10	113919791	113919791	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccagtcccctcttgttcaGaactgcataaaggctgcaag	8	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113919791	C	C	113919791	3	2	57	1	0	0	0	0	1	0	0	0	6653	933	33	4	730	4	GPAM	10	113919791	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1265894	113919791	21614956	1402	64391											
CASP7	840	broad.mit.edu	37	chr10	115451722	115451722	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctatgttattctgccagcaGatgctgtaatggactgtgtt	11	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115451722	C	C	115451722	1	2	57	0	1	0	0	0	0	0	0	0	2702	956	33	4		4	CASP7	10	115451722	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1531931	115451722	20083025	1403	64392											
AFAP1L2	84632	broad.mit.edu	37	chr10	116058988	116058988	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctacacggccctctgagctGagggtccctccccactgggg	12	17	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116058988	A	A	116058988	1	1	57	0	1	0	0	0	0	0	0	0	355	1305	45	4		4	AFAP1L2	10	116058988	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	607266	116058988	19475759	1404	64393											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236245	118236245	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacattacaagtgttcagttCatctggaaaaaacatttgtt	6	6	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118236245	T	T	118236245	2	4	57	1	0	0	0	0	0	0	0	1	12247	825	29	4		4	PNLIPRP3	10	118236245	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2177257	118236245	17298502	1405	64394											
SLC18A2	6571	broad.mit.edu	37	chr10	119014665	119014665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgaacagaacaatagggCagccaccccaaagccttatt	7	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119014665	A	A	119014665	1	1	57	0	1	0	0	0	0	0	0	0	14539	725	25	3		3	SLC18A2	10	119014665	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	778420	119014665	16520082	1406	64395											
INPP5F	22876	broad.mit.edu	37	chr10	121550902	121550902	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgccatcaattgtctacttGataatttttctaactcttga	4	8	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121550902	A	A	121550902	1	1	57	0	1	0	0	0	0	0	0	0	7828	1305	45	4		4	INPP5F	10	121550902	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2536237	121550902	13983845	1407	64396											
SEC23IP	11196	broad.mit.edu	37	chr10	121671721	121671721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctgttttagtcctctcCattttagcatcattctttag	6	9	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121671721	A	A	121671721	1	1	57	0	1	0	0	0	0	0	0	0	14106	609	21	2		2	SEC23IP	10	121671721	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	120819	121671721	13863026	1408	64397											
FGFR2	2263	broad.mit.edu	37	chr10	123324982	123324982	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccatgaagtaccaagtttCactgtctacagtcctactgg	7	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123324982	T	T	123324982	3	4	57	1	0	0	0	0	1	0	0	0	5923	835	29	4	2439	4	FGFR2	10	123324982	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1653261	123324982	12209765	1409	64398											
TACC2	10579	broad.mit.edu	37	chr10	123846369	123846369	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgggcccagagaagcttCtagatgggcctccaggagtg	14	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123846369	G	G	123846369	3	3	57	1	0	0	0	0	1	0	0	0	15621	912	32	4	4364	4	TACC2	10	123846369	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	521387	123846369	11688378	1410	64399											
TACC2	10579	broad.mit.edu	37	chr10	123976043	123976043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcagaggattgtgaccGggacctgtcctggctaatgg	15	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123976043	T	T	123976043	1	4	57	0	1	0	0	0	0	0	0	0	15621	1131	39	1		1	TACC2	10	123976043	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	129674	123976043	11558704	1411	64400											
DMBT1	1755	broad.mit.edu	37	chr10	124345567	124345567	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggatgaagggttcttgttttCccctgtaggatctgaatcca	11	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124345567	T	T	124345567	1	4	57	0	1	0	0	0	0	0	0	0	4617	870	30	4		4	DMBT1	10	124345567	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	369524	124345567	11189180	1412	64401											
DMBT1	1755	broad.mit.edu	37	chr10	124350112	124350112	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcgctaccagtttagttcCttgtacctttgttctggttt	9	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124350112	T	T	124350112	1	4	57	0	1	0	0	0	0	0	0	0	4617	696	24	4		4	DMBT1	10	124350112	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4545	124350112	11184635	1413	64402											
DMBT1	1755	broad.mit.edu	37	chr10	124389723	124389723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgtattcaatggcatcCctcgtaaagtgcaaactatt	6	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124389723	A	A	124389723	1	1	57	0	1	0	0	0	0	0	0	0	4617	638	22	2		2	DMBT1	10	124389723	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	39611	124389723	11145024	1414	64403											
DMBT1	1755	broad.mit.edu	37	chr10	124395546	124395546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatgattatattgaagttttCgatggcccctaccgcagttc	8	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124395546	A	A	124395546	3	1	57	1	0	0	0	0	1	0	0	0	4617	883	31	3	6399	3	DMBT1	10	124395546	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5823	124395546	11139201	1415	64404											
CUZD1	50624	broad.mit.edu	37	chr10	124596455	124596455	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagagagtttgatgacgattCgaaggtgggagtcacacggc	15	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124596455	T	T	124596455	3	4	57	1	0	0	0	0	1	0	0	0	4099	893	31	4	1134	4	CUZD1	10	124596455	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	200909	124596455	10938292	1416	64405											
LHPP	64077	broad.mit.edu	37	chr10	126185591	126185591	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccctacatgaaggcgcttGaggtaccagccctggttctg	12	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126185591	A	A	126185591	3	1	57	1	0	0	0	0	1	0	0	0	8841	1291	45	4	543	4	LHPP	10	126185591	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1589136	126185591	9349156	1417	64406											
C10orf137	26098	broad.mit.edu	37	chr10	127427051	127427051	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaaataaggccttcaataGaataatacactggttcttta	6	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127427051	T	T	127427051	1	4	57	0	1	0	0	0	0	0	0	0	1605	957	33	3		3	C10orf137	10	127427051	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1241460	127427051	8107696	1418	64407											
DHX32	55760	broad.mit.edu	37	chr10	127540983	127540983	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtggcgtcatgtctttGgaggcaaattcttcagtgta	11	7	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127540983	C	C	127540983	2	2	57	1	0	0	0	0	0	0	0	1	4545	1335	47	4		4	DHX32	10	127540983	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	113932	127540983	7993764	1419	64408											
DHX32	55760	broad.mit.edu	37	chr10	127579632	127579632	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctaagtcaaaggtattgTcagaagttcaaatgactgga	9	5	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127579632	A	A	127579632	1	1	57	0	1	0	0	0	0	0	0	0	4545	1682	58	5		5	DHX32	10	127579632	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	38649	127579632	7955115	1420	64409											
KNDC1	85442	broad.mit.edu	37	chr10	134981821	134981821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggaacacctttgaggtaaGtgcaggtgggggtaatgtgc	17	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134981821	T	T	134981821	1	4	57	0	1	0	0	0	0	0	0	0	8497	1044	36	3		3	KNDC1	10	134981821	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7402189	134981821	552926	1421	64410											
FRG2B	441581	broad.mit.edu	37	chr10	135438867	135438867	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctgctgtgcccacacctgGgctaggtcttgataaacagc	10	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135438867	C	C	135438867	2	2	57	1	0	0	0	0	0	0	0	1	6107	1219	43	4		4	FRG2B	10	135438867	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	457046	135438867	95880	1422	64411											
ART1	417	broad.mit.edu	37	chr11	3681682	3681682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaccgaagcccctatctcCtgtgtcccagggatacataa	7	14	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3681682	A	A	3681682	1	1	57	0	1	0	0	0	0	0	0	0	1001	696	24	2		2	ART1	11	3681682	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08		3681682	131324834	1423	64412											
OR51E1	143503	broad.mit.edu	37	chr11	4673879	4673879	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctccctctaccttattgcTgtgctaggtaacttgacaat	7	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4673879	A	A	4673879	2	1	57	1	0	0	0	0	0	0	0	1	11188	1567	55	5		5	OR51E1	11	4673879	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	992197	4673879	130332637	1424	64413											
OR52R1	119695	broad.mit.edu	37	chr11	4824664	4824664	+	3'UTR	DEL	C	-	-													ggatacactgaccctttgctCaggggatgtttccacaacat							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4824664	-	-	4824664	6	5	57	0	1	1	0	1	0	0	0	0	11225	840	29	0		0	OR52R1	11	4824664	3'UTR	DEL	C	TCGA-17-Z026-01A-01W-0746-08	150785	4824664	130181852	1425	64414											
OR51G1	79324	broad.mit.edu	37	chr11	4944805	4944805	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagacaagccaatcatgggGatgtagaagagcagtacagc	13	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4944805	T	T	4944805	2	4	57	1	0	0	0	0	0	0	0	1	11192	1164	41	3		3	OR51G1	11	4944805	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	120141	4944805	130061711	1426	64415											
OR51B2	79345	broad.mit.edu	37	chr11	5344955	5344955	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagggtaaagtctattgaaAgttatgtcagcacaagccag	10	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5344955	T	T	5344955	2	4	57	1	0	0	0	0	0	0	0	1	11183	59	3	5		5	OR51B2	11	5344955	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	400150	5344955	129661561	1427	64416											
UBQLN3	50613	broad.mit.edu	37	chr11	5530649	5530649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcgctgagatatctcttccTtcagctgctggatagtgcat	10	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5530649	A	A	5530649	3	1	57	1	0	0	0	0	1	0	0	0	17024	1609	56	5	1831	5	UBQLN3	11	5530649	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	185694	5530649	129475867	1428	64417											
OR56A1	120796	broad.mit.edu	37	chr11	6048134	6048134	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttctggccacgtttgtCaacaccacaaccagcagtat	6	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6048134	G	G	6048134	3	3	57	1	0	0	0	0	1	0	0	0	11227	825	29	4	159	4	OR56A1	11	6048134	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	517485	6048134	128958382	1429	64418											
CCKBR	887	broad.mit.edu	37	chr11	6292377	6292377	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggctcctgggccgggatcCggctcccggcccacccaggc	14	19	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6292377	T	T	6292377	2	4	57	1	0	0	0	0	0	0	0	1	2909	639	23	4		4	CCKBR	11	6292377	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	244243	6292377	128714139	1430	64419											
HPX	3263	broad.mit.edu	37	chr11	6461729	6461729	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatggttccattgtcatccAgggtggtagcatcaaagctc	11	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6461729	T	T	6461729	3	4	57	1	0	0	0	0	1	0	0	0	7413	188	7	5	1238	5	HPX	11	6461729	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	169352	6461729	128544787	1431	64420											
SCUBE2	57758	broad.mit.edu	37	chr11	9096194	9096194	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggattagcctttgctttGgtgactgtttcaatgcccca	11	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9096194	C	C	9096194	1	2	57	0	1	0	0	0	0	0	0	0	14058	1363	47	4		4	SCUBE2	11	9096194	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2634465	9096194	125910322	1432	64421											
MICAL2	9645	broad.mit.edu	37	chr11	12261023	12261023	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcttgggctccaatcaagAgtgtgggagcagtaaggaag	15	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12261023	T	T	12261023	3	4	57	1	0	0	0	0	1	0	0	0	9663	304	11	5	2163	5	MICAL2	11	12261023	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3164829	12261023	122745493	1433	64422											
TEAD1	7003	broad.mit.edu	37	chr11	12951949	12951949	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgaggaaggtgggcctggGaggcgctgggcctgcgccga	21	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12951949	A	A	12951949	1	1	57	0	1	0	0	0	0	0	0	0	15860	1189	41	4		4	TEAD1	11	12951949	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	690926	12951949	122054567	1434	64423											
SPON1	10418	broad.mit.edu	37	chr11	14278235	14278235	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggctccagaagagaaagatGaaggtacgttgttttctttt	11	5	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14278235	A	A	14278235	3	1	57	1	0	0	0	0	1	0	0	0	15200	1291	45	4	1343	4	SPON1	11	14278235	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1326286	14278235	120728281	1435	64424											
CALCA	796	broad.mit.edu	37	chr11	14989437	14989437	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaagaagagaagatctgtGagtgagaggctgggagagag	18	2	1	7			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14989437	C	C	14989437	1	2	57	0	1	0	0	0	0	0	0	0	2601	1305	45	4		4	CALCA	11	14989437	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	711202	14989437	120017079	1436	64425											
CALCA	796	broad.mit.edu	37	chr11	14989457	14989457	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgagaggctgggagagaGgtcagccccatgggaccttc	17	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14989457	A	A	14989457	1	1	57	0	1	0	0	0	0	0	0	0	2601	1015	35	4		4	CALCA	11	14989457	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	20	14989457	120017059	1437	64426											
PLEKHA7	144100	broad.mit.edu	37	chr11	16838533	16838533	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagagatggagcggggCacctctagcatgctcctgct	14	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16838533	A	A	16838533	2	1	57	1	0	0	0	0	0	0	0	1	12156	697	25	3		3	PLEKHA7	11	16838533	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1849076	16838533	118167983	1438	64427											
ABCC8	6833	broad.mit.edu	37	chr11	17425971	17425971	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttggagggaacacgacCctattactctcataacgatg	8	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17425971	A	A	17425971	1	1	57	0	1	0	0	0	0	0	0	0	58	638	22	2		2	ABCC8	11	17425971	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	587438	17425971	117580545	1439	64428											
ABCC8	6833	broad.mit.edu	37	chr11	17432168	17432168	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctgcattaagtggtcactCagatggatatccagagctga	11	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17432168	G	G	17432168	2	3	57	1	0	0	0	0	0	0	0	1	58	813	29	4		4	ABCC8	11	17432168	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6197	17432168	117574348	1440	64429											
TSG101	7251	broad.mit.edu	37	chr11	18541230	18541230	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgaattttcttaaaatctCttccactaattgttaacatt	3	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18541230	G	G	18541230	1	3	57	0	1	0	0	0	0	0	0	0	16741	928	32	4		4	TSG101	11	18541230	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1109062	18541230	116465286	1441	64430											
HTATIP2	10553	broad.mit.edu	37	chr11	20385630	20385630	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcgatggccggggagccgCgccccgcacgtgactcagca	17	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20385630	T	T	20385630	1	4	57	0	1	0	0	0	0	0	0	0	7502	783	27	4		4	HTATIP2	11	20385630	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1844400	20385630	114620886	1442	64431											
PRMT3	10196	broad.mit.edu	37	chr11	20413655	20413655	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataagtagtaatttagaggtCagaattattttattgtttaa	7	1	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20413655	G	G	20413655	1	3	57	0	1	0	0	0	0	0	0	0	12644	841	29	4		4	PRMT3	11	20413655	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	28025	20413655	114592861	1443	64432											
SLC6A5	9152	broad.mit.edu	37	chr11	20658768	20658768	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctcagacgagtttcccaaGtacctacgcacacacaagcc	6	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20658768	C	C	20658768	3	2	57	1	0	0	0	0	1	0	0	0	14801	1020	36	4	1834	4	SLC6A5	11	20658768	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	245113	20658768	114347748	1444	64433											
NELL1	4745	broad.mit.edu	37	chr11	20965451	20965451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattggtcaggctatggccCattgattcccttgataaagg	11	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20965451	A	A	20965451	1	1	57	0	1	0	0	0	0	0	0	0	10428	609	21	2		2	NELL1	11	20965451	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	306683	20965451	114041065	1445	64434											
NELL1	4745	broad.mit.edu	37	chr11	21306014	21306014	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaacatcacgaaactgGgagatggtctcttcctccag	10	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21306014	A	A	21306014	1	1	57	0	1	0	0	0	0	0	0	0	10428	1247	43	4		4	NELL1	11	21306014	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	340563	21306014	113700502	1446	64435											
ANO5	203859	broad.mit.edu	37	chr11	22249140	22249140	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaacagaattgtaggtaGagaagacctttgggcacatc	11	6	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22249140	C	C	22249140	1	2	57	0	1	0	0	0	0	0	0	0	700	957	33	4		4	ANO5	11	22249140	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	943126	22249140	112757376	1447	64436											
SLC17A6	57084	broad.mit.edu	37	chr11	22396298	22396298	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcccttcttgtttttcatCaggttggtatgctatctgct	7	10	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22396298	T	T	22396298	1	4	57	0	1	0	0	0	0	0	0	0	14534	841	29	4		4	SLC17A6	11	22396298	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	147158	22396298	112610218	1448	64437											
ANO3	63982	broad.mit.edu	37	chr11	26663652	26663652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagaagctttggttcaaCagagaaaattatctctttcc	6	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26663652	A	A	26663652	1	1	57	0	1	0	0	0	0	0	0	0	698	493	17	3		3	ANO3	11	26663652	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4267354	26663652	108342864	1449	64438											
KCNA4	3739	broad.mit.edu	37	chr11	30033300	30033300	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggacggacacaatggctAtgccccttgcaggactggag	13	12	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30033300	C	C	30033300	3	2	57	1	0	0	0	0	1	0	0	0	8075	449	16	5	1039	5	KCNA4	11	30033300	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3369648	30033300	104973216	1450	64439											
RCN1	5954	broad.mit.edu	37	chr11	31887272	31887272	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaggctaaggggagcacGccacagggtggggacccaga	19	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31887272	C	C	31887272	1	2	57	0	1	0	0	0	0	0	0	0	13287	1102	38	4		4	RCN1	11	31887272	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1853972	31887272	103119244	1451	64440											
WT1	7490	broad.mit.edu	37	chr11	32410600	32410600	+	3'UTR	DEL	C	-	-													tgaacggtccccgagggagaCccctcaaagcgccagctgga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32410600	-	-	32410600	6	5	57	0	1	1	0	1	0	0	0	0	17535	522	18	0		0	WT1	11	32410600	3'UTR	DEL	C	TCGA-17-Z026-01A-01W-0746-08	523328	32410600	102595916	1452	64441											
PRR5L	79899	broad.mit.edu	37	chr11	36424836	36424836	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctaaccaggggttattctCttttcctgtagcgttcagac	8	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36424836	G	G	36424836	1	3	57	0	1	0	0	0	0	0	0	0	12708	928	32	4		4	PRR5L	11	36424836	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4014236	36424836	98581680	1453	64442											
ALX4	60529	broad.mit.edu	37	chr11	44296906	44296906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctcactgacctgcacgcGggcctcagtgaggtctgtcc	12	16	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44296906	T	T	44296906	3	4	57	1	0	0	0	0	1	0	0	0	558	1116	39	1	478	1	ALX4	11	44296906	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7872070	44296906	90709610	1454	64443											
AMBRA1	55626	broad.mit.edu	37	chr11	46565612	46565612	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaaaatcacagaagaaagaGacaaagacacacatagagag	8	7	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46565612	C	C	46565612	1	2	57	0	1	0	0	0	0	0	0	0	565	957	33	4		4	AMBRA1	11	46565612	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2268706	46565612	88440904	1455	64444											
CELF1	10658	broad.mit.edu	37	chr11	47508641	47508641	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatggttttcagtgtgtgtCtgatatgtgtaagtatatcc	10	4	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47508641	T	T	47508641	1	4	57	0	1	0	0	0	0	0	0	0	3245	928	32	4		4	CELF1	11	47508641	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	943029	47508641	87497875	1456	64445											
OR4C11	219429	broad.mit.edu	37	chr11	55371693	55371693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtacatggggcttcctaGtgtccggctggacttgatgg	15	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55371693	T	T	55371693	3	4	57	1	0	0	0	0	1	0	0	0	11139	1020	36	3	777	3	OR4C11	11	55371693	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7863052	55371693	79634823	1457	64446											
OR5W2	390148	broad.mit.edu	37	chr11	55682073	55682073	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccattcttccttgttcttGtttcaaactgctacagaaat	5	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55682073	T	T	55682073	1	4	57	0	1	0	0	0	0	0	0	0	11279	1392	48	3		3	OR5W2	11	55682073	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	310380	55682073	79324443	1458	64447											
OR9Q2	219957	broad.mit.edu	37	chr11	57958805	57958805	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgtgctctacacggtggtGaccccaatgctgaatcccct	9	14	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57958805	A	A	57958805	2	1	57	1	0	0	0	0	0	0	0	1	11350	1277	45	4		4	OR9Q2	11	57958805	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2276732	57958805	77047711	1459	64448											
OR1S1	219959	broad.mit.edu	37	chr11	57982425	57982425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggatacgtaccttcataCccccatgtatctcttccttg	5	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57982425	A	A	57982425	3	1	57	1	0	0	0	0	1	0	0	0	11066	507	18	3	211	3	OR1S1	11	57982425	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	23620	57982425	77024091	1460	64449											
OR5B2	390190	broad.mit.edu	37	chr11	58190687	58190687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtagttctgggacactGgttagtcctagaagaatgaa	11	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58190687	T	T	58190687	2	4	57	1	0	0	0	0	0	0	0	1	11244	1335	47	2		2	OR5B2	11	58190687	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	208262	58190687	76815829	1461	64450											
GLYATL2	219970	broad.mit.edu	37	chr11	58605706	58605706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtctggagagtgactacCctcatattcagtaactattg	8	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58605706	A	A	58605706	1	1	57	0	1	0	0	0	0	0	0	0	6545	638	22	2		2	GLYATL2	11	58605706	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	415019	58605706	76400810	1462	64451											
GLYATL2	219970	broad.mit.edu	37	chr11	58605717	58605717	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgactaccctcatattcaGtaactattgctcctacctgt	5	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58605717	C	C	58605717	1	2	57	0	1	0	0	0	0	0	0	0	6545	1044	36	4		4	GLYATL2	11	58605717	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	11	58605717	76400799	1463	64452											
STX3	6809	broad.mit.edu	37	chr11	59549122	59549122	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctattcccactcctagctcCttcatgtattcatcaaagcc	4	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59549122	T	T	59549122	1	4	57	0	1	0	0	0	0	0	0	0	15464	696	24	4		4	STX3	11	59549122	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	943405	59549122	75457394	1464	64453											
TMEM109	79073	broad.mit.edu	37	chr11	60687408	60687408	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacctggtgtcagaggtaagGaaggtagtccctgtgtgact	14	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60687408	A	A	60687408	1	1	57	0	1	0	0	0	0	0	0	0	16148	1189	41	4		4	TMEM109	11	60687408	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1138286	60687408	74319108	1465	64454											
VPS37C	55048	broad.mit.edu	37	chr11	60901509	60901509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagaggagccaccctaccCagctttgccttctgctcctg	8	17	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60901509	A	A	60901509	2	1	57	1	0	0	0	0	0	0	0	1	17334	608	21	2		2	VPS37C	11	60901509	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	214101	60901509	74105007	1466	64455											
SLC22A10	387775	broad.mit.edu	37	chr11	63066983	63066983	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgataaatgtttattattgAaggttgtaagatccaccatg	8	4	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63066983	C	C	63066983	1	2	57	0	1	0	0	0	0	0	0	0	14554	261	9	5		5	SLC22A10	11	63066983	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2165474	63066983	71939533	1467	64456											
RARRES3	5920	broad.mit.edu	37	chr11	63306870	63306870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggctgaggatctcatggGgctagcagctgatgaacatc	14	9	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63306870	T	T	63306870	1	4	57	0	1	0	0	0	0	0	0	0	13165	1247	43	2		2	RARRES3	11	63306870	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	239887	63306870	71699646	1468	64457											
RARRES3	5920	broad.mit.edu	37	chr11	63313776	63313776	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagctgtgggggtcccagtgGagatgagcctcccccatgcc	14	14	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63313776	A	A	63313776	1	1	57	0	1	0	0	0	0	0	0	0	13165	1189	41	4		4	RARRES3	11	63313776	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6906	63313776	71692740	1469	64458											
STIP1	10963	broad.mit.edu	37	chr11	63967898	63967898	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtctcactctgtcctgcctCagcctcctgaggagctagga	10	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63967898	T	T	63967898	1	4	57	0	1	0	0	0	0	0	0	0	15403	841	29	4		4	STIP1	11	63967898	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	654122	63967898	71038618	1470	64459											
FERMT3	83706	broad.mit.edu	37	chr11	63987608	63987608	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgccctctgtcctgaggtGacggtgtgggctaggatgca	16	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63987608	A	A	63987608	1	1	57	0	1	0	0	0	0	0	0	0	5876	1305	45	4		4	FERMT3	11	63987608	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	19710	63987608	71018908	1471	64460											
SLC22A12	116085	broad.mit.edu	37	chr11	64359264	64359264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggctatttccatcccgcCgggccccaaccagaggcccc	9	20	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64359264	A	A	64359264	3	1	57	1	0	0	0	0	1	0	0	0	14556	652	23	1	238	1	SLC22A12	11	64359264	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	371656	64359264	70647252	1472	64461											
NRXN2	9379	broad.mit.edu	37	chr11	64453031	64453031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccagccctgatccctcCaccacaagctcccggcagcc	7	22	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64453031	A	A	64453031	1	1	57	0	1	0	0	0	0	0	0	0	10761	609	21	2		2	NRXN2	11	64453031	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	93767	64453031	70553485	1473	64462											
NRXN2	9379	broad.mit.edu	37	chr11	64461993	64461993	+	Intron	DEL	T	-	-													ccatgtctctagggtggcacTggtttctccccacctctgag							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64461993	-	-	64461993	6	5	57	0	1	1	0	1	0	0	0	0	10761	1595	55	0		0	NRXN2	11	64461993	Intron	DEL	T	TCGA-17-Z026-01A-01W-0746-08	8962	64461993	70544523	1474	64463											
PYGM	5837	broad.mit.edu	37	chr11	64517794	64517794	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgcttgctcccagcaccaCtctccagcagccacacctgg	8	20	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64517794	G	G	64517794	1	3	57	0	1	0	0	0	0	0	0	0	12970	580	20	4		4	PYGM	11	64517794	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	55801	64517794	70488722	1475	64464											
CDCA5	113130	broad.mit.edu	37	chr11	64846930	64846930	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctttgcacaaaccctgggGacctcggtgagtttggagca	14	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64846930	A	A	64846930	2	1	57	1	0	0	0	0	0	0	0	1	3119	1161	41	4		4	CDCA5	11	64846930	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	329136	64846930	70159586	1476	64465											
TIGD3	220359	broad.mit.edu	37	chr11	65123348	65123348	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagatccaggtgctggaactCctggatgagtccaagatgtc	12	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65123348	G	G	65123348	2	3	57	1	0	0	0	0	0	0	0	1	16020	842	30	4		4	TIGD3	11	65123348	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	276418	65123348	69883168	1477	64466											
KAT5	10524	broad.mit.edu	37	chr11	65486700	65486700	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acggcagcaggactggggctGatagcccaccccgcccccac	12	18	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65486700	A	A	65486700	1	1	57	0	1	0	0	0	0	0	0	0	8053	1305	45	4		4	KAT5	11	65486700	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	363352	65486700	69519816	1478	64467											
TSGA10IP	254187	broad.mit.edu	37	chr11	65714762	65714762	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtccacggccaacctcccaGaggcccatggctgctgctgg	12	16	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65714762	C	C	65714762	3	2	57	1	0	0	0	0	1	0	0	0	16743	943	33	4	476	4	TSGA10IP	11	65714762	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	228062	65714762	69291754	1479	64468											
TSGA10IP	254187	broad.mit.edu	37	chr11	65721175	65721175	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccagagggagccggggccCtggggcggcccagcgcaagc	18	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65721175	T	T	65721175	3	4	57	1	0	0	0	0	1	0	0	0	16743	681	24	4	1307	4	TSGA10IP	11	65721175	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6413	65721175	69285341	1480	64469											
MRPL11	65003	broad.mit.edu	37	chr11	66206352	66206352	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgaggccaacaaacagCagccttgtttcaaccctatt	8	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66206352	A	A	66206352	1	1	57	0	1	0	0	0	0	0	0	0	9870	725	25	3		3	MRPL11	11	66206352	5'Flank	SNP	C	TCGA-17-Z026-01A-01W-0746-08	485177	66206352	68800164	1481	64470											
ACTN3	89	broad.mit.edu	37	chr11	66322144	66322144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctctgtggggtactgggCatagagaggagccctccctg	16	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66322144	A	A	66322144	1	1	57	0	1	0	0	0	0	0	0	0	206	725	25	3		3	ACTN3	11	66322144	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	115792	66322144	68684372	1482	64471											
CTSF	8722	broad.mit.edu	37	chr11	66332491	66332491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctcctggggaacggtgGgggtgagtagagaagggcag	20	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66332491	T	T	66332491	1	4	57	0	1	0	0	0	0	0	0	0	4068	1247	43	2		2	CTSF	11	66332491	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	10347	66332491	68674025	1483	64472											
PC	5091	broad.mit.edu	37	chr11	66620061	66620061	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcagcagccccgggtggttCcgcacagctcgagcaaagcc	13	15	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66620061	T	T	66620061	2	4	57	1	0	0	0	0	0	0	0	1	11591	842	30	4		4	PC	11	66620061	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	287570	66620061	68386455	1484	64473											
PC	5091	broad.mit.edu	37	chr11	66633600	66633600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcactgcagccccaggcaCcaggcagaacctgtgcacag	12	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66633600	A	A	66633600	1	1	57	0	1	0	0	0	0	0	0	0	11591	522	18	3		3	PC	11	66633600	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13539	66633600	68372916	1485	64474											
SHANK2	22941	broad.mit.edu	37	chr11	70319093	70319093	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagtgactgccatcgatctCattgtccatgaaggcctctt	8	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70319093	T	T	70319093	3	4	57	1	0	0	0	0	1	0	0	0	14378	835	29	4	122	4	SHANK2	11	70319093	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3685493	70319093	64687423	1486	64475											
NADSYN1	55191	broad.mit.edu	37	chr11	71164432	71164433	+	Intron	INS	-	T	T													aaagaattttaaagagtgagINStctggggcggcgggggcacc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71164433	T	T	71164432	6	5	57	0	1	1	1	0	0	0	0	0	10232	1044	36	0		0	NADSYN1	11	71164432	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	845339	71164432	63842084	1487	64476											
NADSYN1	55191	broad.mit.edu	37	chr11	71201771	71201771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgggacttctccgggatGcttgaatatgccacacttct	9	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71201771	T	T	71201771	1	4	57	0	1	0	0	0	0	0	0	0	10232	1334	46	3		3	NADSYN1	11	71201771	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	37339	71201771	63804745	1488	64477											
NUMA1	4926	broad.mit.edu	37	chr11	71747046	71747046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacccaagagaggaagaaaaGcagttaatcatatcagatat	8	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71747046	A	A	71747046	1	1	57	0	1	0	0	0	0	0	0	0	10845	986	34	4		4	NUMA1	11	71747046	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	545275	71747046	63259470	1489	64478											
ARAP1	116985	broad.mit.edu	37	chr11	72406623	72406623	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgccagccacgcgcatcttCacaatggcagtgatctcctc	9	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72406623	T	T	72406623	2	4	57	1	0	0	0	0	0	0	0	1	840	813	29	4		4	ARAP1	11	72406623	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	659577	72406623	62599893	1490	64479											
ARHGEF17	9828	broad.mit.edu	37	chr11	73022472	73022472	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcgcccagctcggagtaGtcaccaggagcttcggagag	15	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73022472	A	A	73022472	3	1	57	1	0	0	0	0	1	0	0	0	902	1029	36	4	2791	4	ARHGEF17	11	73022472	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	615849	73022472	61984044	1491	64480											
INTS4	92105	broad.mit.edu	37	chr11	77635798	77635798	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcaaaaaagtcattacttCcatatggagtccctatcagt	8	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77635798	T	T	77635798	4	4	57	1	0	0	0	0	0	1	0	0	7850	856	30	4	1427	4	INTS4	11	77635798	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4613326	77635798	57370718	1492	64481											
ODZ4	26011	broad.mit.edu	37	chr11	78431305	78431305	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaccccaatcagttccaatCacacaggattcttttgccat	4	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78431305	G	G	78431305	1	3	57	0	1	0	0	0	0	0	0	0	10932	841	29	4		4	ODZ4	11	78431305	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	795507	78431305	56575211	1493	64482											
ANKRD42	338699	broad.mit.edu	37	chr11	82924432	82924432	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaacgccaggctgcgcagtGaagaaaatgaatagacagct	11	10	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82924432	A	A	82924432	1	1	57	0	1	0	0	0	0	0	0	0	670	1305	45	4		4	ANKRD42	11	82924432	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4493127	82924432	52082084	1494	64483											
CCDC89	220388	broad.mit.edu	37	chr11	85396455	85396455	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgctccacagcctgctggTgctgctgcttgagggtctgc	13	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85396455	A	A	85396455	3	1	57	1	0	0	0	0	1	0	0	0	2894	1696	59	5	409	5	CCDC89	11	85396455	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2472023	85396455	49610061	1495	64484											
SYTL2	54843	broad.mit.edu	37	chr11	85422404	85422404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcaaaggatgctagtgcTaattgccagggtatgggatt	14	5	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85422404	C	C	85422404	1	2	57	0	1	0	0	0	0	0	0	0	15602	1537	53	5		5	SYTL2	11	85422404	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	25949	85422404	49584112	1496	64485											
CCDC83	220047	broad.mit.edu	37	chr11	85568644	85568644	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgatggccaatgggatcctGaaagtgcctgccatcaatgt	11	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85568644	T	T	85568644	1	4	57	0	1	0	0	0	0	0	0	0	2885	1305	45	3		3	CCDC83	11	85568644	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	146240	85568644	49437872	1497	64486											
GRM5	2915	broad.mit.edu	37	chr11	88330367	88330367	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaccttgatctggcctttCtcacatggttcactgcacac	6	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88330367	G	G	88330367	3	3	57	1	0	0	0	0	1	0	0	0	6866	912	32	4	2110	4	GRM5	11	88330367	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2761723	88330367	46676149	1498	64487											
GRM5	2915	broad.mit.edu	37	chr11	88582864	88582864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgcatcatcttcatttGttgattcctgttactattaa	5	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88582864	T	T	88582864	1	4	57	0	1	0	0	0	0	0	0	0	6866	1392	48	3		3	GRM5	11	88582864	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	252497	88582864	46423652	1499	64488											
TYR	7299	broad.mit.edu	37	chr11	88924377	88924377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttttgtacagattgtctGtagccgattggaggagtaca	13	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88924377	T	T	88924377	3	4	57	1	0	0	0	0	1	0	0	0	16939	1377	48	3	833	3	TYR	11	88924377	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	341513	88924377	46082139	1500	64489											
NAALAD2	10003	broad.mit.edu	37	chr11	89903345	89903345	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatatgttctcttttgaatGgataaatgaataacgtgtgt	8	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89903345	A	A	89903345	1	1	57	0	1	0	0	0	0	0	0	0	10222	1363	47	4		4	NAALAD2	11	89903345	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	978968	89903345	45103171	1501	64490											
CHORDC1	26973	broad.mit.edu	37	chr11	89936453	89936454	+	Intron	DNP	CC	AA	AA													gtatagaaaagaacttttacCcaaaattataagatgtactt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	89936454	AA	AA	89936453	1	1	57	0	1	0	0	0	0	0	0	0	3396	638	22	2		2	CHORDC1	11	89936453	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	33108	89936453	45070063	1502	64491											
FAT3	120114	broad.mit.edu	37	chr11	92085740	92085740	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttttagatatgaatgatctGagacctttgttttcacccac	7	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92085740	A	A	92085740	2	1	57	1	0	0	0	0	0	0	0	1	5748	1277	45	4		4	FAT3	11	92085740	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2149287	92085740	42920776	1503	64492											
CCDC67	159989	broad.mit.edu	37	chr11	93118414	93118414	+	Intron	DEL	G	-	-													gaaaagaaaacaaaaatgaaGgaatggaattctatgagaca					rs142100846		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93118414	-	-	93118414	6	5	57	0	1	1	0	1	0	0	0	0	2867	1015	35	0		0	CCDC67	11	93118414	Intron	DEL	G	TCGA-17-Z026-01A-01W-0746-08	1032674	93118414	41888102	1504	64493											
MED17	9440	broad.mit.edu	37	chr11	93528077	93528077	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttcttgtctttcaggttCcccacattggcagacaaaat	6	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93528077	T	T	93528077	3	4	57	1	0	0	0	0	1	0	0	0	9528	855	30	4	885	4	MED17	11	93528077	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	409663	93528077	41478439	1505	64494											
MRE11A	4361	broad.mit.edu	37	chr11	94204877	94204877	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagataacaagatcaatgaaGtcatccaaaaattgttctgg	7	7	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94204877	C	C	94204877	3	2	57	1	0	0	0	0	1	0	0	0	9853	1020	36	4	1470	4	MRE11A	11	94204877	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	676800	94204877	40801639	1506	64495											
CNTN5	53942	broad.mit.edu	37	chr11	100012001	100012001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttattgtgatttcaaggagCagggaacagggaaaaatgaa	13	3	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100012001	A	A	100012001	1	1	57	0	1	0	0	0	0	0	0	0	3676	725	25	3		3	CNTN5	11	100012001	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5807124	100012001	34994515	1507	64496											
CUL5	8065	broad.mit.edu	37	chr11	107917073	107917073	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttaaaagaagatattcttGagtttattaagcaagcacag	7	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107917073	C	C	107917073	3	2	57	1	0	0	0	0	1	0	0	0	4092	1291	45	4	221	4	CUL5	11	107917073	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7905072	107917073	27089443	1508	64497											
NPAT	4863	broad.mit.edu	37	chr11	108059910	108059910	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgaaatttggccacttGgtcgagtaacctgtgtacct	10	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108059910	T	T	108059910	3	4	57	1	0	0	0	0	1	0	0	0	10661	1348	47	2	3856	2	NPAT	11	108059910	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	142837	108059910	26946606	1509	64498											
ATM	472	broad.mit.edu	37	chr11	108159697	108159697	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtattttttcccttaactCtgttagggatttggatcctg	8	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108159697	G	G	108159697	1	3	57	0	1	0	0	0	0	0	0	0	1113	928	32	4		4	ATM	11	108159697	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	99787	108159697	26846819	1510	64499											
EXPH5	23086	broad.mit.edu	37	chr11	108380971	108380971	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcaggctccagtggaaaagGagggctcagcctcctctgat	13	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108380971	A	A	108380971	3	1	57	1	0	0	0	0	1	0	0	0	5365	1174	41	4	710	4	EXPH5	11	108380971	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	221274	108380971	26625545	1511	64500											
SIK2	23235	broad.mit.edu	37	chr11	111575717	111575717	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttttttatttcagtctttgCagaacaagagctataaccac	6	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111575717	T	T	111575717	4	4	57	1	0	0	0	0	0	1	0	0	14431	711	25	4	985	4	SIK2	11	111575717	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3194746	111575717	23430799	1512	64501											
PPP2R1B	5519	broad.mit.edu	37	chr11	111626023	111626023	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatgatcactttacctctGaaaatctgtcagccaccata	4	11	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111626023	A	A	111626023	3	1	57	1	0	0	0	0	1	0	0	0	12484	1294	45	4	1229	4	PPP2R1B	11	111626023	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	50306	111626023	23380493	1513	64502											
DIXDC1	85458	broad.mit.edu	37	chr11	111853272	111853272	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattattaagtcagtattatCaatggaaaataaactgattt	6	3	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111853272	T	T	111853272	1	4	57	0	1	0	0	0	0	0	0	0	4581	841	29	4		4	DIXDC1	11	111853272	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	227249	111853272	23153244	1514	64503											
NCAM1	4684	broad.mit.edu	37	chr11	113078160	113078160	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatggggcatcacaaagtCtgctccatgttagtgtctgc	11	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113078160	A	A	113078160	1	1	57	0	1	0	0	0	0	0	0	0	10297	928	32	3		3	NCAM1	11	113078160	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1224888	113078160	21928356	1515	64504											
USP28	57646	broad.mit.edu	37	chr11	113679905	113679905	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaccgccagttatcctcctGaatgtaatgcttgagttcca	7	11	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113679905	A	A	113679905	4	1	57	1	0	0	0	0	0	1	0	0	17185	1299	45	4	1225	4	USP28	11	113679905	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	601745	113679905	21326611	1516	64505											
HTR3B	9177	broad.mit.edu	37	chr11	113779910	113779910	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgcagattttggtgagctGaaagctatattctagtaaaa	10	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113779910	A	A	113779910	1	1	57	0	1	0	0	0	0	0	0	0	7515	1305	45	4		4	HTR3B	11	113779910	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	100005	113779910	21226606	1517	64506											
VPS11	55823	broad.mit.edu	37	chr11	118939979	118939979	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagcctacaaactacgggtGacacacctgtaccaactgaa	7	13	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118939979	T	T	118939979	2	4	57	1	0	0	0	0	0	0	0	1	17315	1285	45	3		3	VPS11	11	118939979	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5160069	118939979	16066537	1518	64507											
ABCG4	64137	broad.mit.edu	37	chr11	119020680	119020680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtcggcggcgtgatggCggagaaggcgctggaggccg	22	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119020680	A	A	119020680	3	1	57	1	0	0	0	0	1	0	0	0	70	768	27	3	7	3	ABCG4	11	119020680	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	80701	119020680	15985836	1519	64508											
SORL1	6653	broad.mit.edu	37	chr11	121347388	121347388	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accctgctccactttgaattCacctgcccttccttccctcc	3	20	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121347388	T	T	121347388	1	4	57	0	1	0	0	0	0	0	0	0	15048	841	29	4		4	SORL1	11	121347388	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2326708	121347388	13659128	1520	64509											
SORL1	6653	broad.mit.edu	37	chr11	121414162	121414162	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagccatttctccaaggaGccctggttcctgttcctggt	9	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121414162	A	A	121414162	1	1	57	0	1	0	0	0	0	0	0	0	15048	986	34	4		4	SORL1	11	121414162	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	66774	121414162	13592354	1521	64510											
SORL1	6653	broad.mit.edu	37	chr11	121448208	121448208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctaggctctgagaattaGcttggaccttagaaatcagc	9	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121448208	T	T	121448208	1	4	57	0	1	0	0	0	0	0	0	0	15048	986	34	3		3	SORL1	11	121448208	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	34046	121448208	13558308	1522	64511											
HSPA8	3312	broad.mit.edu	37	chr11	122931384	122931384	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggatagaagcttttggtctCtcccttgtattctacttgga	9	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122931384	T	T	122931384	3	4	57	1	0	0	0	0	1	0	0	0	7485	922	32	4	1640	4	HSPA8	11	122931384	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1483176	122931384	12075132	1523	64512											
OR8D4	338662	broad.mit.edu	37	chr11	123777582	123777582	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctgctggtggctgctgtCttctcagtaggtttcactga	11	10	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123777582	A	A	123777582	2	1	57	1	0	0	0	0	0	0	0	1	11327	900	32	3		3	OR8D4	11	123777582	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	846198	123777582	11228934	1524	64513											
VWA5A	4013	broad.mit.edu	37	chr11	124015773	124015773	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actcaatggattgctgccctGaggtttaaggcctggcatta	11	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124015773	A	A	124015773	1	1	57	0	1	0	0	0	0	0	0	0	17369	1305	45	4		4	VWA5A	11	124015773	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	238191	124015773	10990743	1525	64514											
OR8B2	26595	broad.mit.edu	37	chr11	124252847	124252847	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggacatggtgaccttataCagcaatggattacagatggc	12	7	0	2	rs141423425		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124252847	G	G	124252847	2	3	57	1	0	0	0	0	0	0	0	1	11321	465	17	4		4	OR8B2	11	124252847	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	237074	124252847	10753669	1526	64515											
OR8B12	219858	broad.mit.edu	37	chr11	124412862	124412862	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctttggacctgccttctGtagaactgttgtgtagaatg	12	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124412862	A	A	124412862	3	1	57	1	0	0	0	0	1	0	0	0	11320	1377	48	4	245	4	OR8B12	11	124412862	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	160015	124412862	10593654	1527	64516											
PANX3	116337	broad.mit.edu	37	chr11	124489751	124489751	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaatattgacacagtagttGattttatgactttattggct	7	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124489751	C	C	124489751	3	2	57	1	0	0	0	0	1	0	0	0	11516	1290	45	4	1113	4	PANX3	11	124489751	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	76889	124489751	10516765	1528	64517											
ROBO4	54538	broad.mit.edu	37	chr11	124761245	124761245	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggccagagacaagcggGgagaagagagtcccctgcgg	18	10	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124761245	A	A	124761245	3	1	57	1	0	0	0	0	1	0	0	0	13627	1232	43	4	1153	4	ROBO4	11	124761245	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	271494	124761245	10245271	1529	64518											
HEPACAM	220296	broad.mit.edu	37	chr11	124805828	124805828	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctcctacctgtctggatCagaagaaggtagacaaaagg	12	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124805828	T	T	124805828	2	4	57	1	0	0	0	0	0	0	0	1	7119	813	29	4		4	HEPACAM	11	124805828	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	44583	124805828	10200688	1530	64519											
PKNOX2	63876	broad.mit.edu	37	chr11	125299688	125299688	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccaagccccaggaaatttCatgaacttctcagcacccag	6	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299688	A	A	125299688	1	1	57	0	1	0	0	0	0	0	0	0	12078	841	29	3		3	PKNOX2	11	125299688	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	493860	125299688	9706828	1531	64520											
STT3A	3703	broad.mit.edu	37	chr11	125465807	125465807	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgttgccacccattcatgtCaagatgactaagtttggatt	9	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125465807	G	G	125465807	1	3	57	0	1	0	0	0	0	0	0	0	15451	841	29	4		4	STT3A	11	125465807	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	166119	125465807	9540709	1532	64521											
FAM118B	79607	broad.mit.edu	37	chr11	126111011	126111011	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcacaactagcatgatttgGctgtcaaaactagcatgcca	7	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126111011	C	C	126111011	1	2	57	0	1	0	0	0	0	0	0	0	5458	1218	42	4		4	FAM118B	11	126111011	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	645204	126111011	8895505	1533	64522											
KIRREL3	84623	broad.mit.edu	37	chr11	126319106	126319106	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtggcaaggccaaccctcCgggagctggacacatccatc	12	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126319106	T	T	126319106	1	4	57	0	1	0	0	0	0	0	0	0	8397	667	23	4		4	KIRREL3	11	126319106	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	208095	126319106	8687410	1534	64523											
KIRREL3	84623	broad.mit.edu	37	chr11	126587279	126587279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcactgctctgaaggtgCcactgttgtacaagtggcta	12	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126587279	A	A	126587279	1	1	57	0	1	0	0	0	0	0	0	0	8397	754	26	3		3	KIRREL3	11	126587279	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	268173	126587279	8419237	1535	64524											
NFRKB	4798	broad.mit.edu	37	chr11	129739494	129739494	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagccccagaagccacagcTacagtcttggacacagcagc	10	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129739494	C	C	129739494	2	2	57	1	0	0	0	0	0	0	0	1	10479	1509	53	5		5	NFRKB	11	129739494	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3152215	129739494	5267022	1536	64525											
NFRKB	4798	broad.mit.edu	37	chr11	129743800	129743800	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagacagtccagcagagccaGagtggctcacgacccgggcg	15	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129743800	C	C	129743800	3	2	57	1	0	0	0	0	1	0	0	0	10479	942	33	4	1533	4	NFRKB	11	129743800	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4306	129743800	5262716	1537	64526											
NTM	50863	broad.mit.edu	37	chr11	131720972	131720972	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacttgctttagtccatggGgaaccaaaatttgtcatggt	10	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131720972	A	A	131720972	1	1	57	0	1	0	0	0	0	0	0	0	10794	1247	43	4		4	NTM	11	131720972	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1977172	131720972	3285544	1538	64527											
NTM	50863	broad.mit.edu	37	chr11	132123251	132123251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaaataatgtgcccaagGtaagcggctaagccaggatt	10	7	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132123251	T	T	132123251	1	4	57	0	1	0	0	0	0	0	0	0	10794	1276	44	3		3	NTM	11	132123251	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	402279	132123251	2883265	1539	64528											
KDM5A	5927	broad.mit.edu	37	chr12	406210	406210	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttaaaggagtaataccttGagaacaactcttagaagcag	8	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	406210	A	A	406210	4	1	57	1	0	0	0	0	0	1	0	0	8203	1299	45	4	857	4	KDM5A	12	406210	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08		406210	133445685	1540	64529											
CACNA2D4	93589	broad.mit.edu	37	chr12	1996143	1996143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctatgagataaatacccGggccgcaaacctttcccctg	8	13	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1996143	T	T	1996143	1	4	57	0	1	0	0	0	0	0	0	0	2577	1131	39	1		1	CACNA2D4	12	1996143	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1589933	1996143	131855752	1541	64530											
CACNA1C	775	broad.mit.edu	37	chr12	2723011	2723011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtcactgcctagccgagCctcagtctcggatgactcct	10	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2723011	A	A	2723011	1	1	57	0	1	0	0	0	0	0	0	0	2566	754	26	3		3	CACNA1C	12	2723011	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	726868	2723011	131128884	1542	64531											
PRMT8	56341	broad.mit.edu	37	chr12	3659145	3659145	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gactctcacttaccggaactCcatgtaccacaacaagcacg	6	15	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3659145	G	G	3659145	3	3	57	1	0	0	0	0	1	0	0	0	12648	855	30	4	315	4	PRMT8	12	3659145	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	936134	3659145	130192750	1543	64532											
EFCAB4B	84766	broad.mit.edu	37	chr12	3763384	3763384	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggctggactcacatctccTtctcttggtggagtttgcag	11	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3763384	C	C	3763384	3	2	57	1	0	0	0	0	1	0	0	0	4977	1609	56	5	1391	5	EFCAB4B	12	3763384	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	104239	3763384	130088511	1544	64533											
NTF3	4908	broad.mit.edu	37	chr12	5603706	5603706	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtcctgctgagcgacaGcacccccttggagcccccgc	13	18	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603706	A	A	5603706	3	1	57	1	0	0	0	0	1	0	0	0	10791	971	34	4	371	4	NTF3	12	5603706	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1840322	5603706	128248189	1545	64534											
VWF	7450	broad.mit.edu	37	chr12	6058394	6058394	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaaagcagaggaagatggGagcttcacaatggtgggaag	16	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6058394	T	T	6058394	1	4	57	0	1	0	0	0	0	0	0	0	17373	1189	41	3		3	VWF	12	6058394	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	454688	6058394	127793501	1546	64535											
VWF	7450	broad.mit.edu	37	chr12	6140546	6140546	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaaatgaatgcttggaaaAtgttcctattaagtggcaga	9	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6140546	T	T	6140546	1	4	57	0	1	0	0	0	0	0	0	0	17373	116	4	5		5	VWF	12	6140546	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	82152	6140546	127711349	1547	64536											
VWF	7450	broad.mit.edu	37	chr12	6145517	6145517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctcactccacccgcaggGcctgggtccccggcgcagcc	11	21	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6145517	T	T	6145517	1	4	57	0	1	0	0	0	0	0	0	0	17373	1218	42	3		3	VWF	12	6145517	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4971	6145517	127706378	1548	64537											
LPAR5	57121	broad.mit.edu	37	chr12	6730295	6730295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacccagagggctagcgcGttgagggggagcccggcagc	18	11	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6730295	T	T	6730295	3	4	57	1	0	0	0	0	1	0	0	0	8995	1136	40	3	1002	3	LPAR5	12	6730295	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	584778	6730295	127121600	1549	64538											
SPSB2	84727	broad.mit.edu	37	chr12	6981479	6981479	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccggatagagggtcctgCccttcagtccgcggaatgct	13	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6981479	T	T	6981479	3	4	57	1	0	0	0	0	1	0	0	0	15231	739	26	4	212	4	SPSB2	12	6981479	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	251184	6981479	126870416	1550	64539											
C1R	715	broad.mit.edu	37	chr12	7242749	7242749	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtcagcagcatcttgttCccttgggacataaattcctt	8	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7242749	A	A	7242749	2	1	57	1	0	0	0	0	0	0	0	1	1992	842	30	3		3	C1R	12	7242749	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	261270	7242749	126609146	1551	64540											
APOBEC1	339	broad.mit.edu	37	chr12	7805422	7805422	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgtcaaactcccagggttcGattcttctcctgaaatacaa	6	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7805422	T	T	7805422	2	4	57	1	0	0	0	0	0	0	0	1	789	1048	37	3		3	APOBEC1	12	7805422	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	562673	7805422	126046473	1552	64541											
CLEC4E	26253	broad.mit.edu	37	chr12	8687185	8687185	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggcggtgggtgtggcCatgttcttgctcttccttct	15	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8687185	A	A	8687185	1	1	57	0	1	0	0	0	0	0	0	0	3547	609	21	2		2	CLEC4E	12	8687185	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	881763	8687185	125164710	1553	64542											
A2ML1	144568	broad.mit.edu	37	chr12	9010579	9010579	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaatgctttggccaagctCagaaattcatcttcattgat	6	9	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9010579	T	T	9010579	4	4	57	1	0	0	0	0	0	1	0	0	5	827	29	4	3247	4	A2ML1	12	9010579	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	323394	9010579	124841316	1554	64543											
A2M	2	broad.mit.edu	37	chr12	9243157	9243157	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaagtaaagcatcttgagGaattggttagatttcaggtt	11	3	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9243157	T	T	9243157	1	4	57	0	1	0	0	0	0	0	0	0	4	1189	41	3		3	A2M	12	9243157	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	232578	9243157	124608738	1555	64544											
C12orf36	283422	broad.mit.edu	37	chr12	13526177	13526177	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctgctggcattgatgcctCacatcttcctcaattttctg	7	12	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13526177	G	G	13526177	2	3	57	1	0	0	0	0	0	0	0	1	1696	813	29	4		4	C12orf36	12	13526177	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4283020	13526177	120325718	1556	64545											
PTPRO	5800	broad.mit.edu	37	chr12	15704555	15704555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacacttttaattggactGttgcttgttaccctcattat	6	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15704555	T	T	15704555	2	4	57	1	0	0	0	0	0	0	0	1	12917	1364	48	3		3	PTPRO	12	15704555	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2178378	15704555	118147340	1557	64546											
PIK3C2G	5288	broad.mit.edu	37	chr12	18641506	18641506	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaaggagcagaaacttatCaaaattctgggagatattgg	10	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18641506	G	G	18641506	3	3	57	1	0	0	0	0	1	0	0	0	12006	816	29	4	2571	4	PIK3C2G	12	18641506	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2936951	18641506	115210389	1558	64547											
PLEKHA5	54477	broad.mit.edu	37	chr12	19496260	19496260	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccatttttactgatagacgGaatcagcaggaattcagcgt	9	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19496260	A	A	19496260	3	1	57	1	0	0	0	0	1	0	0	0	12154	1175	41	4	2436	4	PLEKHA5	12	19496260	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	854754	19496260	114355635	1559	64548											
SLCO1C1	53919	broad.mit.edu	37	chr12	20890032	20890032	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattttatattgttatattTcttttcagaaccaaacctgt	3	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20890032	A	A	20890032	1	1	57	0	1	0	0	0	0	0	0	0	14839	1798	62	5		5	SLCO1C1	12	20890032	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1393772	20890032	112961863	1560	64549											
LST-3TM12	338821	broad.mit.edu	37	chr12	21207494	21207494	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtacaaggaaatcttacGtttattttgtaattcaagtc	6	6	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21207494	A	A	21207494	3	1	57	1	0	0	0	0	1	0	0	0	9153	1145	40	4	1503	4	LST-3TM12	12	21207494	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	317462	21207494	112644401	1561	64550											
SLCO1A2	6579	broad.mit.edu	37	chr12	21471738	21471738	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctcaaagcttccattaatGaatccaactagagatgttgg	7	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21471738	T	T	21471738	3	4	57	1	0	0	0	0	1	0	0	0	14836	1281	45	3	1884	3	SLCO1A2	12	21471738	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	264244	21471738	112380157	1562	64551											
GYS2	2998	broad.mit.edu	37	chr12	21733137	21733137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattcaatccatttaaaagCaagttcatcatctttctcac	2	10	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21733137	A	A	21733137	1	1	57	0	1	0	0	0	0	0	0	0	6978	725	25	3		3	GYS2	12	21733137	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	261399	21733137	112118758	1563	64552											
ABCC9	10060	broad.mit.edu	37	chr12	22069878	22069878	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attagctacctaccctgactCgaatgacattgatctccaca	5	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22069878	T	T	22069878	3	4	57	1	0	0	0	0	1	0	0	0	59	884	31	4	4365	4	ABCC9	12	22069878	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	336741	22069878	111782017	1564	64553											
SOX5	6660	broad.mit.edu	37	chr12	24661186	24661186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggaaaggggagcaaacCtggagaaaagaagctcagtg	15	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24661186	A	A	24661186	1	1	57	0	1	0	0	0	0	0	0	0	15068	696	24	2		2	SOX5	12	24661186	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2591308	24661186	109190709	1565	64554											
BCAT1	586	broad.mit.edu	37	chr12	24995313	24995313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctagtcaactgcataaCattaaaggaaaactcattag	5	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24995313	A	A	24995313	1	1	57	0	1	0	0	0	0	0	0	0	1359	493	17	3		3	BCAT1	12	24995313	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	334127	24995313	108856582	1566	64555											
CCDC91	55297	broad.mit.edu	37	chr12	28496390	28496390	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttttccttaccaactcaAggattcaggtcacctcacct	4	14	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28496390	G	G	28496390	1	3	57	0	1	0	0	0	0	0	0	0	2898	87	3	5		5	CCDC91	12	28496390	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3501077	28496390	105355505	1567	64556											
IPO8	10526	broad.mit.edu	37	chr12	30787166	30787166	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcacctcttccattatttGactgcattgcttgagcagtt	6	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30787166	C	C	30787166	4	2	57	1	0	0	0	0	0	1	0	0	7868	1294	45	4	375	4	IPO8	12	30787166	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2290776	30787166	103064729	1568	64557											
DDX11	1663	broad.mit.edu	37	chr12	31231557	31231557	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgcctatccagagattttCatagtttgaagttgggcaga	10	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31231557	T	T	31231557	1	4	57	0	1	0	0	0	0	0	0	0	4376	841	29	4		4	DDX11	12	31231557	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	444391	31231557	102620338	1569	64558											
BICD1	636	broad.mit.edu	37	chr12	32458939	32458939	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgggcctcttgtgaaactGaatggagactatcggactcc	11	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32458939	C	C	32458939	2	2	57	1	0	0	0	0	0	0	0	1	1434	1277	45	4		4	BICD1	12	32458939	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1227382	32458939	101392956	1570	64559											
PKP2	5318	broad.mit.edu	37	chr12	32945339	32945339	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggggatttttgcagccgaGaatactttgtcattttcctc	9	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32945339	C	C	32945339	1	2	57	0	1	0	0	0	0	0	0	0	12080	957	33	4		4	PKP2	12	32945339	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	486400	32945339	100906556	1571	64560											
SLC2A13	114134	broad.mit.edu	37	chr12	40422292	40422292	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtataaccgccggaactgCtgcaagtcccaacatgtacc	8	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40422292	T	T	40422292	3	4	57	1	0	0	0	0	1	0	0	0	14656	797	28	4	1242	4	SLC2A13	12	40422292	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7476953	40422292	93429603	1572	64561											
TMEM117	84216	broad.mit.edu	37	chr12	44287726	44287726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagtttggcacctcagtGcttcttggcctttctccacc	7	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44287726	T	T	44287726	1	4	57	0	1	0	0	0	0	0	0	0	16154	1334	46	3		3	TMEM117	12	44287726	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3865434	44287726	89564169	1573	64562											
ANO6	196527	broad.mit.edu	37	chr12	45664174	45664174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtctgatgccgcctcctGctctgtctgcagcctaacac	9	16	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45664174	T	T	45664174	1	4	57	0	1	0	0	0	0	0	0	0	701	1334	46	3		3	ANO6	12	45664174	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1376448	45664174	88187721	1574	64563											
ANO6	196527	broad.mit.edu	37	chr12	45741770	45741770	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgttttaaaattgtgaaaaGagttggtttcttgttctgcg	11	3	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45741770	C	C	45741770	1	2	57	0	1	0	0	0	0	0	0	0	701	957	33	4		4	ANO6	12	45741770	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	77596	45741770	88110125	1575	64564											
SFRS2IP	9169	broad.mit.edu	37	chr12	46320468	46320468	+	Missense_Mutation	SNP	C	T	T													agaatttggatcatcagcatCtagatggatgtcattttttt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46320468	T	T	46320468	3	4	57	1	0	0	0	0	1	0	0	0	14290	913	32	4	1395	4	SFRS2IP	12	46320468	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	578698	46320468	87531427	1576	64565	299	2									
SFRS2IP	9169	broad.mit.edu	37	chr12	46320470	46320470	+	Missense_Mutation	SNP	A	G	G													aatttggatcatcagcatctAgatggatgtcatttttttct							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46320470	G	G	46320470	3	3	57	1	0	0	0	0	1	0	0	0	14290	420	15	5	1397	5	SFRS2IP	12	46320470	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2	46320470	87531425	1577	64566	299	2									
SLC38A1	81539	broad.mit.edu	37	chr12	46582801	46582801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcccagtcatagatgacCaagggaatgctgaccaagga	12	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46582801	A	A	46582801	3	1	57	1	0	0	0	0	1	0	0	0	14715	593	21	2	51	2	SLC38A1	12	46582801	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	262331	46582801	87269094	1578	64567											
SLC38A4	55089	broad.mit.edu	37	chr12	47182432	47182432	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacacacaaataagaaagtGaaaacatctaaatatatgct	4	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47182432	A	A	47182432	1	1	57	0	1	0	0	0	0	0	0	0	14720	1305	45	4		4	SLC38A4	12	47182432	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	599631	47182432	86669463	1579	64568											
FAM113B	91523	broad.mit.edu	37	chr12	47629097	47629097	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaggtccgcgagttccgctCcgaccaccatctggtacgtt	11	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47629097	T	T	47629097	3	4	57	1	0	0	0	0	1	0	0	0	5448	855	30	4	253	4	FAM113B	12	47629097	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	446665	47629097	86222798	1580	64569											
COL2A1	1280	broad.mit.edu	37	chr12	48370606	48370606	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacactcacaggagggccggGcagaccctgcagaccagtga	14	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48370606	A	A	48370606	3	1	57	1	0	0	0	0	1	0	0	0	3719	1203	42	4	1067	4	COL2A1	12	48370606	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	741509	48370606	85481289	1581	64570											
LALBA	3906	broad.mit.edu	37	chr12	48962426	48962426	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagctgacaagtattacccaGaaaggcactgagttccccta	8	12	0	3	rs4439559		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48962426	A	A	48962426	1	1	57	0	1	0	0	0	0	0	0	0	8676	957	33	4		4	LALBA	12	48962426	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	591820	48962426	84889469	1582	64571											
ADCY6	112	broad.mit.edu	37	chr12	49167445	49167445	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagtactgcgggggtggcaGaggcagcgttgggtgaaggc	21	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49167445	A	A	49167445	1	1	57	0	1	0	0	0	0	0	0	0	298	957	33	4		4	ADCY6	12	49167445	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	205019	49167445	84684450	1583	64572											
ADCY6	112	broad.mit.edu	37	chr12	49168255	49168255	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcggtgctatgtgcccgtGagcggacaatgctgcgggac	16	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49168255	A	A	49168255	3	1	57	1	0	0	0	0	1	0	0	0	298	1294	45	4	1329	4	ADCY6	12	49168255	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	810	49168255	84683640	1584	64573											
CCDC65	85478	broad.mit.edu	37	chr12	49315155	49315155	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactctttatagtcaactatCaaagcaacttactccagccc	3	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49315155	G	G	49315155	3	3	57	1	0	0	0	0	1	0	0	0	2865	827	29	4	1414	4	CCDC65	12	49315155	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	146900	49315155	84536740	1585	64574											
PRKAG1	5571	broad.mit.edu	37	chr12	49398153	49398153	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctagcactttgggaggctGaggcgggaggatcacttgag	16	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49398153	A	A	49398153	1	1	57	0	1	0	0	0	0	0	0	0	12606	1305	45	4		4	PRKAG1	12	49398153	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	82998	49398153	84453742	1586	64575											
PRKAG1	5571	broad.mit.edu	37	chr12	49412551	49412551	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcgcccggcttggtttcctCgctttaggaaactctcttgg	12	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49412551	T	T	49412551	1	4	57	0	1	0	0	0	0	0	0	0	12606	899	31	4		4	PRKAG1	12	49412551	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	14398	49412551	84439344	1587	64576											
PRPF40B	25766	broad.mit.edu	37	chr12	50029453	50029453	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagcagggaggaggagtctCtgagagatgggtctgtaacc	17	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50029453	G	G	50029453	1	3	57	0	1	0	0	0	0	0	0	0	12678	928	32	4		4	PRPF40B	12	50029453	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	616902	50029453	83822442	1588	64577											
LIMA1	51474	broad.mit.edu	37	chr12	50586217	50586217	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaatgtccaaaggctcagaGagaaattgccatcatacctt	7	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50586217	A	A	50586217	1	1	57	0	1	0	0	0	0	0	0	0	8868	957	33	4		4	LIMA1	12	50586217	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	556764	50586217	83265678	1589	64578											
SLC11A2	4891	broad.mit.edu	37	chr12	51394078	51394078	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaacactgatgactttcTagaggaaaacccctcacctt	6	12	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51394078	C	C	51394078	1	2	57	0	1	0	0	0	0	0	0	0	14494	1537	53	5		5	SLC11A2	12	51394078	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	807861	51394078	82457817	1590	64579											
CELA1	1990	broad.mit.edu	37	chr12	51723690	51723690	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcactccccccgcccccgtCtctggttgtgaaattctgta	8	16	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51723690	G	G	51723690	1	3	57	0	1	0	0	0	0	0	0	0	3240	928	32	4		4	CELA1	12	51723690	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	329612	51723690	82128205	1591	64580											
SLC4A8	9498	broad.mit.edu	37	chr12	51845937	51845937	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagcgtgttcagttcattCttggcaccgaggaagatgaa	11	9	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51845937	G	G	51845937	3	3	57	1	0	0	0	0	1	0	0	0	14773	913	32	4	321	4	SLC4A8	12	51845937	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	122247	51845937	82005958	1592	64581											
KRT83	3889	broad.mit.edu	37	chr12	52708822	52708822	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttcctctgtctgggcctCagctttctcacctatataag	6	14	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52708822	T	T	52708822	1	4	57	0	1	0	0	0	0	0	0	0	8568	841	29	4		4	KRT83	12	52708822	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	862885	52708822	81143073	1593	64582											
EIF4B	1975	broad.mit.edu	37	chr12	53413716	53413716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcagtgcgtttaccacGtgaacccagcaatccagaga	10	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53413716	T	T	53413716	3	4	57	1	0	0	0	0	1	0	0	0	5069	1145	40	3	397	3	EIF4B	12	53413716	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	704894	53413716	80438179	1594	64583											
SP7	121340	broad.mit.edu	37	chr12	53722618	53722618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggctggattaaggggaGcaaagtcagatgggtaggtg	20	3	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53722618	T	T	53722618	3	4	57	1	0	0	0	0	1	0	0	0	15083	971	34	3	691	3	SP7	12	53722618	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	308902	53722618	80129277	1595	64584											
MAP3K12	7786	broad.mit.edu	37	chr12	53876154	53876154	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccgatgagatgccacgtttCtgcaggagagatggggtggg	17	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53876154	G	G	53876154	5	3	57	1	0	0	0	0	0	0	1	0	9338	927	32	4	452	4	MAP3K12	12	53876154	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	153536	53876154	79975741	1596	64585											
ATF7	11016	broad.mit.edu	37	chr12	53910986	53910986	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtatcggcatgctcagttCtgtcctttggctggccatct	10	11	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53910986	T	T	53910986	3	4	57	1	0	0	0	0	1	0	0	0	1090	922	32	4	68	4	ATF7	12	53910986	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	34832	53910986	79940909	1597	64586											
CALCOCO1	57658	broad.mit.edu	37	chr12	54113731	54113731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagagctccatttcactctGggatgcataaatccccaagc	7	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54113731	A	A	54113731	1	1	57	0	1	0	0	0	0	0	0	0	2603	1363	47	4		4	CALCOCO1	12	54113731	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	202745	54113731	79738164	1598	64587											
HOXC13	3229	broad.mit.edu	37	chr12	54338903	54338903	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgcggctagcaagttcatcAccaaagagaagcgccggcgc	12	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54338903	T	T	54338903	3	4	57	1	0	0	0	0	1	0	0	0	7379	159	6	5	862	5	HOXC13	12	54338903	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	225172	54338903	79512992	1599	64588											
HOXC9	3225	broad.mit.edu	37	chr12	54396303	54396303	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacgctggaactggagaagGagtttctcttcaatatgtat	11	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54396303	A	A	54396303	3	1	57	1	0	0	0	0	1	0	0	0	7384	1175	41	4	634	4	HOXC9	12	54396303	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	57400	54396303	79455592	1600	64589											
KIAA0748	9840	broad.mit.edu	37	chr12	55356073	55356073	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctccctgtatattaaccctGaattgaaatcagaaagtggt	7	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55356073	T	T	55356073	1	4	57	0	1	0	0	0	0	0	0	0	8260	1305	45	3		3	KIAA0748	12	55356073	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	959770	55356073	78495822	1601	64590											
KIAA0748	9840	broad.mit.edu	37	chr12	55357556	55357556	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggcaggggtcttccatttCaatcctccgcacctgggact	11	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55357556	T	T	55357556	3	4	57	1	0	0	0	0	1	0	0	0	8260	835	29	4	952	4	KIAA0748	12	55357556	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1483	55357556	78494339	1602	64591											
OR6C6	283365	broad.mit.edu	37	chr12	55688179	55688179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggatttagtaaaggggCaattgaggtatagagcaaag	15	2	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55688179	A	A	55688179	3	1	57	1	0	0	0	0	1	0	0	0	11288	710	25	3	108	3	OR6C6	12	55688179	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	330623	55688179	78163716	1603	64592											
DGKA	1606	broad.mit.edu	37	chr12	56345838	56345838	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatgcctctattgctcatcGattccacatcatgcgagaga	9	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56345838	A	A	56345838	3	1	57	1	0	0	0	0	1	0	0	0	4505	1058	37	4	1677	4	DGKA	12	56345838	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	657659	56345838	77506057	1604	64593											
PA2G4	5036	broad.mit.edu	37	chr12	56506584	56506584	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagaaactgacaggtcttctCcctctccttttcttgcatat	5	12	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56506584	T	T	56506584	1	4	57	0	1	0	0	0	0	0	0	0	11455	870	30	4		4	PA2G4	12	56506584	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	160746	56506584	77345311	1605	64594											
SMARCC2	6601	broad.mit.edu	37	chr12	56563579	56563579	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctattgggtctccatcactCttctcggactccttctcact	5	16	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56563579	G	G	56563579	3	3	57	1	0	0	0	0	1	0	0	0	14890	912	32	4	1232	4	SMARCC2	12	56563579	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	56995	56563579	77288316	1606	64595											
COQ10A	93058	broad.mit.edu	37	chr12	56661650	56661650	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctgaggctggcttaccttcGagccgttccttcatgggatt	12	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56661650	C	C	56661650	2	2	57	1	0	0	0	0	0	0	0	1	3775	1045	37	4		4	COQ10A	12	56661650	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	98071	56661650	77190245	1607	64596											
STAT2	6773	broad.mit.edu	37	chr12	56740466	56740466	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaggccgggccttggagctCtctgctctggctgcccagtc	14	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56740466	A	A	56740466	1	1	57	0	1	0	0	0	0	0	0	0	15383	928	32	3		3	STAT2	12	56740466	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	78816	56740466	77111429	1608	64597											
TIMELESS	8914	broad.mit.edu	37	chr12	56815001	56815002	+	Intron	INS	-	C	C													cctcgttcctgaccaccgcaINScccccccgcgcctgctctct							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56815002	C	C	56815001	6	5	57	0	1	1	1	0	0	0	0	0	16027	174	6	0		0	TIMELESS	12	56815001	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	74535	56815001	77036894	1609	64598											
BAZ2A	11176	broad.mit.edu	37	chr12	57007918	57007918	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccattgtagccacacatcttCagttctaggaaatcacagga	7	11	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57007918	G	G	57007918	2	3	57	1	0	0	0	0	0	0	0	1	1336	813	29	4		4	BAZ2A	12	57007918	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	192917	57007918	76843977	1610	64599											
ARHGAP9	64333	broad.mit.edu	37	chr12	57872991	57872991	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtggagggagcttctaGgcgtcttgccaaccaccagt	14	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57872991	A	A	57872991	2	1	57	1	0	0	0	0	0	0	0	1	891	991	35	4		4	ARHGAP9	12	57872991	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	865073	57872991	75978904	1611	64600											
MARS	4141	broad.mit.edu	37	chr12	57881806	57881806	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccatttcccggcgtgcctCgcggaggccgctgaactcag	12	16	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57881806	G	G	57881806	1	3	57	0	1	0	0	0	0	0	0	0	9408	899	31	4		4	MARS	12	57881806	5'Flank	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8815	57881806	75970089	1612	64601											
TSPAN31	6302	broad.mit.edu	37	chr12	58140071	58140071	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctttcaagtacttacttgCtttttaaaattttcctctta	2	10	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58140071	G	G	58140071	1	3	57	0	1	0	0	0	0	0	0	0	16771	812	28	4		4	TSPAN31	12	58140071	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	258265	58140071	75711824	1613	64602											
CDK4	1019	broad.mit.edu	37	chr12	58145206	58145206	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctcagggtccccacttctCtacagatcatcacaccccac	4	19	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58145206	T	T	58145206	1	4	57	0	1	0	0	0	0	0	0	0	3171	928	32	4		4	CDK4	12	58145206	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5135	58145206	75706689	1614	64603											
AVIL	10677	broad.mit.edu	37	chr12	58201312	58201312	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggacccatgctccccgCcccagcccagtggccagagg	12	17	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58201312	T	T	58201312	1	4	57	0	1	0	0	0	0	0	0	0	1232	754	26	4		4	AVIL	12	58201312	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	56106	58201312	75650583	1615	64604											
AVPR1A	552	broad.mit.edu	37	chr12	63543567	63543567	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttctctctctctctctCtctctctctctcacacacac	0	18	7	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63543567	G	G	63543567	1	3	57	0	1	0	0	0	0	0	0	0	1236	928	32	4		4	AVPR1A	12	63543567	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5342255	63543567	70308328	1616	64605											
DPY19L2	283417	broad.mit.edu	37	chr12	64038286	64038286	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctcccaatcctttgaaaaGatacagataatcagtgttta	5	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64038286	C	C	64038286	1	2	57	0	1	0	0	0	0	0	0	0	4781	957	33	4		4	DPY19L2	12	64038286	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	494719	64038286	69813609	1617	64606											
DPY19L2	283417	broad.mit.edu	37	chr12	64057426	64057426	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataaacctgggttatagcTtatgaaacagtgcagttgac	9	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64057426	C	C	64057426	1	2	57	0	1	0	0	0	0	0	0	0	4781	1624	56	5		5	DPY19L2	12	64057426	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	19140	64057426	69794469	1618	64607											
SRGAP1	57522	broad.mit.edu	37	chr12	64505790	64505790	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtctaagaattttagtcctCctctcccaccgaaaattatg	5	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64505790	T	T	64505790	1	4	57	0	1	0	0	0	0	0	0	0	15263	870	30	4		4	SRGAP1	12	64505790	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	448364	64505790	69346105	1619	64608											
XPOT	11260	broad.mit.edu	37	chr12	64828639	64828639	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acattgtccccgcatgtttcCtagcacctttaaaacaaacc	4	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64828639	T	T	64828639	2	4	57	1	0	0	0	0	0	0	0	1	17577	680	24	4		4	XPOT	12	64828639	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	322849	64828639	69023256	1620	64609											
TBK1	29110	broad.mit.edu	37	chr12	64878273	64878273	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataccataggattaatatatGaaaaaagtaagttgggattt	8	2	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64878273	C	C	64878273	3	2	57	1	0	0	0	0	1	0	0	0	15759	1291	45	4	1213	4	TBK1	12	64878273	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	49634	64878273	68973622	1621	64610											
LEMD3	23592	broad.mit.edu	37	chr12	65634920	65634920	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttctaatttttcaaaatgAcaaatatgtgttaagtgaaa	5	4	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65634920	T	T	65634920	1	4	57	0	1	0	0	0	0	0	0	0	8793	290	10	5		5	LEMD3	12	65634920	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	756647	65634920	68216975	1622	64611											
HELB	92797	broad.mit.edu	37	chr12	66698701	66698701	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaccaaatcaaaaacatatCtgtgctctctttcttaaaga	3	11	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66698701	T	T	66698701	2	4	57	1	0	0	0	0	0	0	0	1	7112	903	32	4		4	HELB	12	66698701	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1063781	66698701	67153194	1623	64612											
IL26	55801	broad.mit.edu	37	chr12	68619522	68619522	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaacccacacctcaaaatGaaattcaccagcatttccct	3	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68619522	A	A	68619522	2	1	57	1	0	0	0	0	0	0	0	1	7749	1281	45	4		4	IL26	12	68619522	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1920821	68619522	65232373	1624	64613											
NUP107	57122	broad.mit.edu	37	chr12	69129095	69129095	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataacgtcttgttgtttgttGatggagggtggatggtggat	16	2	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69129095	A	A	69129095	3	1	57	1	0	0	0	0	1	0	0	0	10848	1290	45	4	2575	4	NUP107	12	69129095	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	509573	69129095	64722800	1625	64614											
CNOT2	4848	broad.mit.edu	37	chr12	70732714	70732714	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctactcattgttaacctgctGattctctgggtcattcccat	6	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70732714	T	T	70732714	1	4	57	0	1	0	0	0	0	0	0	0	3651	1305	45	3		3	CNOT2	12	70732714	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1603619	70732714	63119181	1626	64615											
PTPRB	5787	broad.mit.edu	37	chr12	70946400	70946400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacctgcaagtggaggcaGgaatccaacgtttataaatt	9	7	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70946400	T	T	70946400	1	4	57	0	1	0	0	0	0	0	0	0	12904	1015	35	2		2	PTPRB	12	70946400	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	213686	70946400	62905495	1627	64616											
PTPRB	5787	broad.mit.edu	37	chr12	70983967	70983967	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctcactacaagagacctCatcctgccattattgtttgc	6	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70983967	A	A	70983967	3	1	57	1	0	0	0	0	1	0	0	0	12904	826	29	3	4928	3	PTPRB	12	70983967	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	37567	70983967	62867928	1628	64617											
PTPRR	5801	broad.mit.edu	37	chr12	71286585	71286585	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaattgacaatctggtgGcgtttgcttacttgagcttc	11	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71286585	T	T	71286585	2	4	57	1	0	0	0	0	0	0	0	1	12918	1190	42	3		3	PTPRR	12	71286585	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	302618	71286585	62565310	1629	64618											
LGR5	8549	broad.mit.edu	37	chr12	71974202	71974202	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggaatgtttcaggctcaAggtaggacttgctatgccat	12	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71974202	T	T	71974202	3	4	57	1	0	0	0	0	1	0	0	0	8829	86	3	5	1613	5	LGR5	12	71974202	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	687617	71974202	61877693	1630	64619											
LGR5	8549	broad.mit.edu	37	chr12	71974360	71974360	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgaggcagatggatcacttGaggtcagcagttcaagacca	12	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71974360	A	A	71974360	1	1	57	0	1	0	0	0	0	0	0	0	8829	1305	45	4		4	LGR5	12	71974360	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	158	71974360	61877535	1631	64620											
LGR5	8549	broad.mit.edu	37	chr12	71977971	71977971	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaccatgggctacatggtCgctctcatcttgctcaattc	8	13	3	0	rs149642519		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71977971	T	T	71977971	2	4	57	1	0	0	0	0	0	0	0	1	8829	871	31	4		4	LGR5	12	71977971	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3611	71977971	61873924	1632	64621											
TPH2	121278	broad.mit.edu	37	chr12	72425109	72425109	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcttacaggaatgccttatCaccaccttccaggaagccta	7	13	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72425109	G	G	72425109	3	3	57	1	0	0	0	0	1	0	0	0	16526	816	29	4	1274	4	TPH2	12	72425109	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	447138	72425109	61426786	1633	64622											
CAPS2	84698	broad.mit.edu	37	chr12	75676059	75676059	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgagaatgcttctttgcAcagtaacattttcttatgtt	6	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75676059	C	C	75676059	3	2	57	1	0	0	0	0	1	0	0	0	2664	157	6	5	40	5	CAPS2	12	75676059	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3250950	75676059	58175836	1634	64623											
NAV3	89795	broad.mit.edu	37	chr12	78334064	78334064	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtctctgttttccctcaCcccatctcactttttccttc	2	16	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78334064	G	G	78334064	1	3	57	0	1	0	0	0	0	0	0	0	10279	522	18	4		4	NAV3	12	78334064	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2658005	78334064	55517831	1635	64624											
NAV3	89795	broad.mit.edu	37	chr12	78444770	78444770	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtataccacgcctctccgtCgagctgctgtctctaggctg	10	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78444770	A	A	78444770	2	1	57	1	0	0	0	0	0	0	0	1	10279	876	31	3		3	NAV3	12	78444770	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	110706	78444770	55407125	1636	64625											
MYF5	4617	broad.mit.edu	37	chr12	81110806	81110806	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgtttctccccatccctctCgctgccgtccaggtgcaccg	8	20	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81110806	A	A	81110806	1	1	57	0	1	0	0	0	0	0	0	0	10121	899	31	3		3	MYF5	12	81110806	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2666036	81110806	52741089	1637	64626											
PPFIA2	8499	broad.mit.edu	37	chr12	81657181	81657181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcactctgccagtacaGttataaggtgatgttatgaa	9	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81657181	T	T	81657181	1	4	57	0	1	0	0	0	0	0	0	0	12406	1044	36	3		3	PPFIA2	12	81657181	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	546375	81657181	52194714	1638	64627											
PPFIA2	8499	broad.mit.edu	37	chr12	81735156	81735156	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattcccattaaagagtttGattttcacaaatatttaaat	3	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81735156	C	C	81735156	1	2	57	0	1	0	0	0	0	0	0	0	12406	1305	45	4		4	PPFIA2	12	81735156	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	77975	81735156	52116739	1639	64628											
PPFIA2	8499	broad.mit.edu	37	chr12	81758915	81758915	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagatgaagtcactaggggtGaatcagagagaagaaaggaa	14	4	2	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81758915	C	C	81758915	1	2	57	0	1	0	0	0	0	0	0	0	12406	1305	45	4		4	PPFIA2	12	81758915	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	23759	81758915	52092980	1640	64629											
PPFIA2	8499	broad.mit.edu	37	chr12	82089987	82089987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggtaaatgtgtacacaCagcaaatgcaaataagggtt	11	5	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82089987	A	A	82089987	1	1	57	0	1	0	0	0	0	0	0	0	12406	493	17	3		3	PPFIA2	12	82089987	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	331072	82089987	51761908	1641	64630											
ATP2B1	490	broad.mit.edu	37	chr12	89996906	89996906	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttctttcaccatgaatttTccgggcatttatttcgttga	6	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89996906	A	A	89996906	4	1	57	1	0	0	0	0	0	1	0	0	1143	1792	62	5	862	5	ATP2B1	12	89996906	Nonsense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	7906919	89996906	43854989	1642	64631											
ATP2B1	490	broad.mit.edu	37	chr12	90028903	90028903	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caaacctctaaactgtttttCcttactccagtcattgaaag	4	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90028903	G	G	90028903	3	3	57	1	0	0	0	0	1	0	0	0	1143	864	30	4	3360	4	ATP2B1	12	90028903	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	31997	90028903	43822992	1643	64632											
CCDC38	120935	broad.mit.edu	37	chr12	96284693	96284693	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatgccttccttgttacttGaatgtaatgataattctaga	8	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96284693	C	C	96284693	4	2	57	1	0	0	0	0	0	1	0	0	2837	1294	45	4	935	4	CCDC38	12	96284693	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6255790	96284693	37567202	1644	64633											
AMDHD1	144193	broad.mit.edu	37	chr12	96350448	96350448	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatgtgctggcctaaaggtGaggcgtgtgttcagttggca	16	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96350448	C	C	96350448	1	2	57	0	1	0	0	0	0	0	0	0	567	1305	45	4		4	AMDHD1	12	96350448	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	65755	96350448	37501447	1645	64634											
C12orf63	374467	broad.mit.edu	37	chr12	97147597	97147597	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttacctgctcttcatctGtttgatgtggcactgaagct	10	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97147597	T	T	97147597	2	4	57	1	0	0	0	0	0	0	0	1	1719	1364	48	3		3	C12orf63	12	97147597	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	797149	97147597	36704298	1646	64635											
NEDD1	121441	broad.mit.edu	37	chr12	97334248	97334248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacagtggaaaaaatcaGgatttctccagctttgatga	9	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97334248	T	T	97334248	3	4	57	1	0	0	0	0	1	0	0	0	10404	991	35	2	1234	2	NEDD1	12	97334248	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	186651	97334248	36517647	1647	64636											
ANKS1B	56899	broad.mit.edu	37	chr12	99145090	99145090	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggttagcagccccttttcctCctgttcaaggttttttagaa	8	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99145090	G	G	99145090	1	3	57	0	1	0	0	0	0	0	0	0	689	870	30	4		4	ANKS1B	12	99145090	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1810842	99145090	34706805	1648	64637											
SCYL2	55681	broad.mit.edu	37	chr12	100728092	100728092	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtccgggagtgaaattatAgttgtcttatgattgatttt	11	3	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100728092	C	C	100728092	1	2	57	0	1	0	0	0	0	0	0	0	14061	435	15	5		5	SCYL2	12	100728092	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1583002	100728092	33123803	1649	64638											
MYBPC1	4604	broad.mit.edu	37	chr12	102046895	102046895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatgcttaatattctagatCctcctaagatcatcctggat	5	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102046895	A	A	102046895	3	1	57	1	0	0	0	0	1	0	0	0	10105	855	30	3	1706	3	MYBPC1	12	102046895	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1318803	102046895	31805000	1650	64639											
STAB2	55576	broad.mit.edu	37	chr12	104031753	104031753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagttttccttctccatccCcgttaactaactgcctctca	3	16	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104031753	A	A	104031753	1	1	57	0	1	0	0	0	0	0	0	0	15356	638	22	2		2	STAB2	12	104031753	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1984858	104031753	29820142	1651	64640											
TXNRD1	7296	broad.mit.edu	37	chr12	104742006	104742006	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatccttgatcatactacttCtctgttttattcattttggt	4	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104742006	G	G	104742006	1	3	57	0	1	0	0	0	0	0	0	0	16933	928	32	4		4	TXNRD1	12	104742006	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	710253	104742006	29109889	1652	64641											
MTERFD3	80298	broad.mit.edu	37	chr12	107371701	107371701	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagagaaggaaatactattCtgtatacttcttgggcaaag	9	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107371701	T	T	107371701	2	4	57	1	0	0	0	0	0	0	0	1	10015	912	32	4		4	MTERFD3	12	107371701	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2629695	107371701	26480194	1653	64642											
MTERFD3	80298	broad.mit.edu	37	chr12	107372117	107372117	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacttgattaactcttcctCatttttgcagaccaactgcc	4	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107372117	T	T	107372117	3	4	57	1	0	0	0	0	1	0	0	0	10015	835	29	4	785	4	MTERFD3	12	107372117	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	416	107372117	26479778	1654	64643											
BTBD11	121551	broad.mit.edu	37	chr12	108051342	108051342	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctactttctcaaaaacatGatggtcctcattgaaaacga	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108051342	A	A	108051342	3	1	57	1	0	0	0	0	1	0	0	0	1548	1290	45	4	3333	4	BTBD11	12	108051342	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	679225	108051342	25800553	1655	64644											
USP30	84749	broad.mit.edu	37	chr12	109494575	109494575	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatttggggtcccattacaGaaagaaagaagcgtagaaaa	10	5	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109494575	C	C	109494575	3	2	57	1	0	0	0	0	1	0	0	0	17188	943	33	4	178	4	USP30	12	109494575	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1443233	109494575	24357320	1656	64645											
ACACB	32	broad.mit.edu	37	chr12	109644722	109644722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcagaagatctaccccGtgacagcagaggtcattatt	11	9	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109644722	T	T	109644722	1	4	57	0	1	0	0	0	0	0	0	0	107	1160	40	3		3	ACACB	12	109644722	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	150147	109644722	24207173	1657	64646											
ACACB	32	broad.mit.edu	37	chr12	109654629	109654629	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacaagtgtgtgataaacctCagggagcagttcaagccaga	12	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109654629	T	T	109654629	2	4	57	1	0	0	0	0	0	0	0	1	107	813	29	4		4	ACACB	12	109654629	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	9907	109654629	24197266	1658	64647											
MYO1H	283446	broad.mit.edu	37	chr12	109847873	109847873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaaatggaaggcatagaGgtaaacattttgatgttttc	10	3	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109847873	T	T	109847873	3	4	57	1	0	0	0	0	1	0	0	0	10169	1014	35	2	1323	2	MYO1H	12	109847873	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	193244	109847873	24004022	1659	64648											
MYO1H	283446	broad.mit.edu	37	chr12	109865318	109865318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcagatcaaatacctgGggctgatggagcacctgcgg	14	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109865318	T	T	109865318	3	4	57	1	0	0	0	0	1	0	0	0	10169	1232	43	2	1898	2	MYO1H	12	109865318	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	17445	109865318	23986577	1660	64649											
UBE3B	89910	broad.mit.edu	37	chr12	109927832	109927832	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgactcctgccccccagTgtgcaacttctccactctcc	6	19	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109927832	G	G	109927832	1	3	57	0	1	0	0	0	0	0	0	0	17006	1711	59	5		5	UBE3B	12	109927832	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	62514	109927832	23924063	1661	64650											
ANKRD13A	88455	broad.mit.edu	37	chr12	110450881	110450881	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actttttcagcctggttttgGaatttgtcagaaagtatgag	10	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110450881	A	A	110450881	1	1	57	0	1	0	0	0	0	0	0	0	641	1189	41	4		4	ANKRD13A	12	110450881	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	523049	110450881	23401014	1662	64651											
ANKRD13A	88455	broad.mit.edu	37	chr12	110467403	110467403	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaagactgagagatttcatCaaattggaattcccacctgg	9	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110467403	G	G	110467403	3	3	57	1	0	0	0	0	1	0	0	0	641	816	29	4	1239	4	ANKRD13A	12	110467403	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	16522	110467403	23384492	1663	64652											
MYL2	4633	broad.mit.edu	37	chr12	111353639	111353639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcctgggagaaactggCagagttgcccaagagattgg	14	9	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111353639	A	A	111353639	1	1	57	0	1	0	0	0	0	0	0	0	10141	725	25	3		3	MYL2	12	111353639	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	886236	111353639	22498256	1664	64653											
C12orf51	283450	broad.mit.edu	37	chr12	112642244	112642244	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaggaaaattcaacctctCatttcataggaaatttcata	4	7	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112642244	T	T	112642244	1	4	57	0	1	0	0	0	0	0	0	0	1709	841	29	4		4	C12orf51	12	112642244	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1288605	112642244	21209651	1665	64654											
RPL6	6128	broad.mit.edu	37	chr12	112844583	112844583	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgtccagtgaggatgatcaGaatggtcccgggggtaatgc	16	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112844583	C	C	112844583	3	2	57	1	0	0	0	0	1	0	0	0	13709	933	33	4	434	4	RPL6	12	112844583	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	202339	112844583	21007312	1666	64655											
TPCN1	53373	broad.mit.edu	37	chr12	113716636	113716636	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggacggcgctcctcatcttCaaaggtaagtgggcttgagt	13	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113716636	G	G	113716636	3	3	57	1	0	0	0	0	1	0	0	0	16519	825	29	4	1563	4	TPCN1	12	113716636	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	872053	113716636	20135259	1667	64656											
RBM19	9904	broad.mit.edu	37	chr12	114364967	114364967	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctcctcctcctcttccatCtttgctgaagagttgtctgc	6	15	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114364967	T	T	114364967	2	4	57	1	0	0	0	0	0	0	0	1	13229	912	32	4		4	RBM19	12	114364967	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	648331	114364967	19486928	1668	64657											
RBM19	9904	broad.mit.edu	37	chr12	114400034	114400034	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtgagactcctgcccactCactgtgatccgggatgtgtc	13	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114400034	T	T	114400034	1	4	57	0	1	0	0	0	0	0	0	0	13229	841	29	4		4	RBM19	12	114400034	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	35067	114400034	19451861	1669	64658											
POP5	51367	broad.mit.edu	37	chr12	121017278	121017278	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatttcttcagcttaaggtCagtcactgctcagtgggcac	10	10	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121017278	T	T	121017278	1	4	57	0	1	0	0	0	0	0	0	0	12348	841	29	4		4	POP5	12	121017278	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6617244	121017278	12834617	1670	64659											
CABP1	9478	broad.mit.edu	37	chr12	121093817	121093817	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccctcttgcggaaagccCctcccgggaccaggagccag	12	17	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121093817	T	T	121093817	1	4	57	0	1	0	0	0	0	0	0	0	2557	638	22	4		4	CABP1	12	121093817	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	76539	121093817	12758078	1671	64660											
GPR109A	338442	broad.mit.edu	37	chr12	123186985	123186985	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcatgctgttcatgtaggtGaagctgagagtgataaagaa	13	4	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123186985	T	T	123186985	3	4	57	1	0	0	0	0	1	0	0	0	6690	1281	45	3	249	3	GPR109A	12	123186985	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2093168	123186985	10664910	1672	64661											
DNAH10	196385	broad.mit.edu	37	chr12	124288395	124288395	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatctgacttctgggttctCcagttatggaattaatgaga	10	6	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124288395	A	A	124288395	1	1	57	0	1	0	0	0	0	0	0	0	4638	870	30	3		3	DNAH10	12	124288395	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1101410	124288395	9563500	1673	64662											
NCOR2	9612	broad.mit.edu	37	chr12	124884987	124884987	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgcacgaaactttcatatGagcgcaacccgccgtgtctc	8	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124884987	A	A	124884987	1	1	57	0	1	0	0	0	0	0	0	0	10331	1305	45	4		4	NCOR2	12	124884987	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	596592	124884987	8966908	1674	64663											
TMEM132D	121256	broad.mit.edu	37	chr12	129563096	129563096	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctgttttggcctctgcaGaagttcctgagccactgcag	10	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129563096	T	T	129563096	3	4	57	1	0	0	0	0	1	0	0	0	16170	933	33	3	1209	3	TMEM132D	12	129563096	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4678109	129563096	4288799	1675	64664											
TMEM132D	121256	broad.mit.edu	37	chr12	129694113	129694113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccacagactccagcagCtctgtcactgtgccgtcgtc	8	17	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129694113	A	A	129694113	3	1	57	1	0	0	0	0	1	0	0	0	16170	796	28	3	1924	3	TMEM132D	12	129694113	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	131017	129694113	4157782	1676	64665											
PIWIL1	9271	broad.mit.edu	37	chr12	130842171	130842171	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggggcatgtgtacattttgGaacttggagttcttttttca	12	5	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130842171	A	A	130842171	1	1	57	0	1	0	0	0	0	0	0	0	12052	1189	41	4		4	PIWIL1	12	130842171	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1148058	130842171	3009724	1677	64666											
GPR133	283383	broad.mit.edu	37	chr12	131514479	131514479	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctctggggttaggttGtggacccctcgttcagtgac	14	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131514479	A	A	131514479	1	1	57	0	1	0	0	0	0	0	0	0	6708	1392	48	4		4	GPR133	12	131514479	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	672308	131514479	2337416	1678	64667											
SFRS8	6433	broad.mit.edu	37	chr12	132262741	132262741	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagagaaagaaaagaaaaaGaaaaagcacaaaaaaagatc	8	3	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132262741	C	C	132262741	3	2	57	1	0	0	0	0	1	0	0	0	14296	933	33	4	2328	4	SFRS8	12	132262741	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	748262	132262741	1589154	1679	64668											
GOLGA3	2802	broad.mit.edu	37	chr12	133357422	133357422	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caccttctccttctccttctCtagtgaggcctgcagggcct	8	16	3	1	rs138371674	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133357422	G	G	133357422	3	3	57	1	0	0	0	0	1	0	0	0	6618	922	32	4	980	4	GOLGA3	12	133357422	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1094681	133357422	494473	1680	64669											
TPTE2	93492	broad.mit.edu	37	chr13	20010405	20010405	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaaatttattgctgtgGgttttattggttcgcctttc	9	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20010405	A	A	20010405	2	1	57	1	0	0	0	0	0	0	0	1	16555	1219	43	4		4	TPTE2	13	20010405	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08		20010405	95159473	1681	64670											
TPTE2	93492	broad.mit.edu	37	chr13	20067056	20067056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgggctagaggatgatAaaagaatacagtcagatagg	14	3	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20067056	G	G	20067056	1	3	57	0	1	0	0	0	0	0	0	0	16555	377	13	5		5	TPTE2	13	20067056	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	56651	20067056	95102822	1682	64671											
SPATA13	221178	broad.mit.edu	37	chr13	24585622	24585622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagtgtccctgctggtgaGgacagaacctggaattctgt	14	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24585622	T	T	24585622	1	4	57	0	1	0	0	0	0	0	0	0	15116	1015	35	2		2	SPATA13	13	24585622	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4518566	24585622	90584256	1683	64672											
C1QTNF9	338872	broad.mit.edu	37	chr13	24892875	24892875	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccccagactctccaacaCacatggctgatggagaccaa	7	16	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24892875	T	T	24892875	1	4	57	0	1	0	0	0	0	0	0	0	1990	493	17	4		4	C1QTNF9	13	24892875	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	307253	24892875	90277003	1684	64673											
PARP4	143	broad.mit.edu	37	chr13	25075884	25075884	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagatttccatataaaatctGggtttgcaatatgaacgtgg	9	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25075884	C	C	25075884	3	2	57	1	0	0	0	0	1	0	0	0	11557	1348	47	4	5081	4	PARP4	13	25075884	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	183009	25075884	90093994	1685	64674											
STARD13	90627	broad.mit.edu	37	chr13	33684072	33684072	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcagcacatactggtagatCtctgtttgcctgtctagagt	9	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33684072	T	T	33684072	2	4	57	1	0	0	0	0	0	0	0	1	15374	912	32	4		4	STARD13	13	33684072	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8608188	33684072	81485806	1686	64675											
ALG5	29880	broad.mit.edu	37	chr13	37569465	37569465	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgctcaacacagcccacatCtattaatgttttggcaaaga	7	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37569465	T	T	37569465	1	4	57	0	1	0	0	0	0	0	0	0	521	928	32	4		4	ALG5	13	37569465	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3885393	37569465	77600413	1687	64676											
POSTN	10631	broad.mit.edu	37	chr13	38172752	38172752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accactcacttacccttggtCccgacccctgatacgactat	5	17	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38172752	A	A	38172752	3	1	57	1	0	0	0	0	1	0	0	0	12354	855	30	3	2490	3	POSTN	13	38172752	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	603287	38172752	76997126	1688	64677											
TRPC4	7223	broad.mit.edu	37	chr13	38211588	38211588	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggtggttaaatcaaaaaGgctgaaattctttttcttgt	9	5	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38211588	A	A	38211588	3	1	57	1	0	0	0	0	1	0	0	0	16705	1000	35	4	551	4	TRPC4	13	38211588	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	38836	38211588	76958290	1689	64678											
TRPC4	7223	broad.mit.edu	37	chr13	38357400	38357400	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgagagttctgattctgctCttactatccttagagggatg	11	8	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38357400	G	G	38357400	3	3	57	1	0	0	0	0	1	0	0	0	16705	913	32	4	2917	4	TRPC4	13	38357400	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	145812	38357400	76812478	1690	64679											
C13orf23	80209	broad.mit.edu	37	chr13	39600516	39600516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggagctttgcagcccccCttgaaagcctgtaatataag	10	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39600516	A	A	39600516	3	1	57	1	0	0	0	0	1	0	0	0	1734	680	24	2	2488	2	C13orf23	13	39600516	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1243116	39600516	75569362	1691	64680											
DGKH	160851	broad.mit.edu	37	chr13	42784760	42784760	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttgagagcactctgaaatCttgggaagataagcagaagt	11	6	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42784760	A	A	42784760	3	1	57	1	0	0	0	0	1	0	0	0	4510	913	32	3	2967	3	DGKH	13	42784760	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3184244	42784760	72385118	1692	64681											
ENOX1	55068	broad.mit.edu	37	chr13	43839687	43839687	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taactgatttatctgaggttGcattttataaaacttccaat	5	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43839687	A	A	43839687	1	1	57	0	1	0	0	0	0	0	0	0	5168	1334	46	4		4	ENOX1	13	43839687	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1054927	43839687	71330191	1693	64682											
ENOX1	55068	broad.mit.edu	37	chr13	43930117	43930117	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtgcattatggcaggcgggGatgggggcctgagccggtcc	19	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43930117	C	C	43930117	3	2	57	1	0	0	0	0	1	0	0	0	5168	1174	41	4	1210	4	ENOX1	13	43930117	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	90430	43930117	71239761	1694	64683											
ENOX1	55068	broad.mit.edu	37	chr13	43968754	43968754	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaggcatagccgctggcacGaacatcccaccaagcacacc	9	17	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43968754	T	T	43968754	1	4	57	0	1	0	0	0	0	0	0	0	5168	1073	37	3		3	ENOX1	13	43968754	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	38637	43968754	71201124	1695	64684											
TSC22D1	8848	broad.mit.edu	37	chr13	45149030	45149030	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggttgttgctgctgacttGaaaccgatcccccagtcatc	9	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45149030	C	C	45149030	4	2	57	1	0	0	0	0	0	1	0	0	16732	1294	45	4	2181	4	TSC22D1	13	45149030	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1180276	45149030	70020848	1696	64685											
KCTD4	386618	broad.mit.edu	37	chr13	45768721	45768721	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attttttgaagatgctatttCagcttgttcttcttggcttt	7	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45768721	T	T	45768721	1	4	57	0	1	0	0	0	0	0	0	0	8181	841	29	4		4	KCTD4	13	45768721	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	619691	45768721	69401157	1697	64686											
COG3	83548	broad.mit.edu	37	chr13	46083856	46083856	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccctcaatcctagaccaCagaccacaatttctccagca	3	16	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46083856	T	T	46083856	4	4	57	1	0	0	0	0	0	1	0	0	3691	479	17	4	1682	4	COG3	13	46083856	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	315135	46083856	69086022	1698	64687											
ZC3H13	23091	broad.mit.edu	37	chr13	46537855	46537855	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaaataatgattataaaatGatttctcaaaaaatagtttc	3	3	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46537855	A	A	46537855	1	1	57	0	1	0	0	0	0	0	0	0	17691	1305	45	4		4	ZC3H13	13	46537855	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	453999	46537855	68632023	1699	64688											
ZC3H13	23091	broad.mit.edu	37	chr13	46549455	46549455	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtccatctcttggattccTatcttctcggatctcttctc	5	13	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46549455	A	A	46549455	3	1	57	1	0	0	0	0	1	0	0	0	17691	1521	53	5	2287	5	ZC3H13	13	46549455	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	11600	46549455	68620423	1700	64689											
ZC3H13	23091	broad.mit.edu	37	chr13	46594533	46594533	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagcccacgaaaactctaGaaagtaaataatcaagaatt	6	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46594533	A	A	46594533	1	1	57	0	1	0	0	0	0	0	0	0	17691	957	33	4		4	ZC3H13	13	46594533	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	45078	46594533	68575345	1701	64690											
LCP1	3936	broad.mit.edu	37	chr13	46718607	46718607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgactcgagggttaacaCccagggagttcatccagttc	11	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46718607	A	A	46718607	3	1	57	1	0	0	0	0	1	0	0	0	8763	507	18	3	684	3	LCP1	13	46718607	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	124074	46718607	68451271	1702	64691											
C13orf18	80183	broad.mit.edu	37	chr13	46946097	46946097	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcatcagcagcagatgtcaGatgggaaggctcaaaaaaag	11	7	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46946097	C	C	46946097	3	2	57	1	0	0	0	0	1	0	0	0	1733	933	33	4	1526	4	C13orf18	13	46946097	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	227490	46946097	68223781	1703	64692											
FNDC3A	22862	broad.mit.edu	37	chr13	49771828	49771828	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctatttaatcaacatcaaGactaagacctttatcctttt	3	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49771828	C	C	49771828	1	2	57	0	1	0	0	0	0	0	0	0	6027	957	33	4		4	FNDC3A	13	49771828	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2825731	49771828	65398050	1704	64693											
WDFY2	115825	broad.mit.edu	37	chr13	52293419	52293419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacaagcaatttgcctgGcactgctctgagagtgggca	13	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52293419	T	T	52293419	3	4	57	1	0	0	0	0	1	0	0	0	17396	1212	42	3	438	3	WDFY2	13	52293419	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2521591	52293419	62876459	1705	64694											
UTP14C	9724	broad.mit.edu	37	chr13	52605336	52605336	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggattccaaaactggctcAgcacattgcatgtagttgag	11	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52605336	T	T	52605336	1	4	57	0	1	0	0	0	0	0	0	0	17223	203	7	5		5	UTP14C	13	52605336	3'UTR	SNP	A	TCGA-17-Z026-01A-01W-0746-08	311917	52605336	62564542	1706	64695											
OLFM4	10562	broad.mit.edu	37	chr13	53624766	53624766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaaacacagggaaagagGgcaaactagacattgtaatg	10	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53624766	T	T	53624766	3	4	57	1	0	0	0	0	1	0	0	0	10950	1232	43	2	1411	2	OLFM4	13	53624766	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1019430	53624766	61545112	1707	64696											
PCDH20	64881	broad.mit.edu	37	chr13	61985377	61985377	+	Nonstop_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttattccaccatgaaatatCaaatattagaaatatccatt	3	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61985377	G	G	61985377	4	3	57	1	0	0	0	0	0	0	0	0	11609	837	29	4	4	4	PCDH20	13	61985377	Nonstop_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8360611	61985377	53184501	1708	64697											
PCDH9	5101	broad.mit.edu	37	chr13	67748668	67748668	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtcaggtgagcacgagtgaCgtgagataagattatgtgtg	15	5	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67748668	G	G	67748668	1	3	57	0	1	0	0	0	0	0	0	0	11612	551	19	4		4	PCDH9	13	67748668	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5763291	67748668	47421210	1709	64698											
PIBF1	10464	broad.mit.edu	37	chr13	73401164	73401164	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagtgaacgtgatgcacttGaacaggaagtaattgagctt	11	6	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73401164	C	C	73401164	3	2	57	1	0	0	0	0	1	0	0	0	11974	1291	45	4	845	4	PIBF1	13	73401164	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5652496	73401164	41768714	1710	64699											
MYCBP2	23077	broad.mit.edu	37	chr13	77773203	77773203	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaataggaacagctccggtCtacagctcccagcgtgagca	11	12	1	2	rs112695545		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77773203	G	G	77773203	1	3	57	0	1	0	0	0	0	0	0	0	10112	928	32	4		4	MYCBP2	13	77773203	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4372039	77773203	37396675	1711	64700											
SCEL	8796	broad.mit.edu	37	chr13	78165533	78165533	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taactttgaaaatataggcaGatacatccacctaaaccagg	6	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78165533	C	C	78165533	3	2	57	1	0	0	0	0	1	0	0	0	14000	933	33	4	668	4	SCEL	13	78165533	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	392330	78165533	37004345	1712	64701											
NDFIP2	54602	broad.mit.edu	37	chr13	80122414	80122414	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaagataatttatgattttCaaattcaggtgtatgaattc	7	3	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80122414	T	T	80122414	1	4	57	0	1	0	0	0	0	0	0	0	10341	841	29	4		4	NDFIP2	13	80122414	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1956881	80122414	35047464	1713	64702											
SLITRK1	114798	broad.mit.edu	37	chr13	84453529	84453529	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtatcgccttccctctgcCctcccctattggggttgggg	11	14	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84453529	T	T	84453529	1	4	57	0	1	0	0	0	0	0	0	0	14856	638	22	4		4	SLITRK1	13	84453529	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4331115	84453529	30716349	1714	64703											
SLITRK6	84189	broad.mit.edu	37	chr13	86368537	86368537	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctcattcctctcttcttCctcttccagatgctttggac	4	14	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86368537	A	A	86368537	4	1	57	1	0	0	0	0	0	1	0	0	14861	864	30	3	422	3	SLITRK6	13	86368537	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1915008	86368537	28801341	1715	64704											
GPC6	10082	broad.mit.edu	37	chr13	94086340	94086340	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attcctcttcttctctgcttGatattgctctctggcatcca	5	13	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94086340	C	C	94086340	1	2	57	0	1	0	0	0	0	0	0	0	6667	1305	45	4		4	GPC6	13	94086340	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7717803	94086340	21083538	1716	64705											
DZIP1	22873	broad.mit.edu	37	chr13	96270221	96270221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaacgagggtgccatttGccaagtctggggaacaaacc	14	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96270221	T	T	96270221	1	4	57	0	1	0	0	0	0	0	0	0	4903	1334	46	3		3	DZIP1	13	96270221	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2183881	96270221	18899657	1717	64706											
CLYBL	171425	broad.mit.edu	37	chr13	100543592	100543592	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggcctttactttccaaggGagtatgatcgacatgccatt	11	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100543592	T	T	100543592	2	4	57	1	0	0	0	0	0	0	0	1	3605	1161	41	3		3	CLYBL	13	100543592	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4273371	100543592	14626286	1718	64707											
TMTC4	84899	broad.mit.edu	37	chr13	101287330	101287330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaaagtcagcagcacaCagtacccaacgctggggagg	11	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101287330	A	A	101287330	3	1	57	1	0	0	0	0	1	0	0	0	16386	478	17	3	996	3	TMTC4	13	101287330	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	743738	101287330	13882548	1719	64708											
NALCN	259232	broad.mit.edu	37	chr13	101721105	101721105	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgaacagaaatacatAagtgccccagcataatttcc	5	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101721105	T	T	101721105	2	4	57	1	0	0	0	0	0	0	0	1	10242	349	13	5		5	NALCN	13	101721105	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	433775	101721105	13448773	1720	64709											
FGF14	2259	broad.mit.edu	37	chr13	102378930	102378930	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaataaaatatgtaataagtCtatgtaataataatgcatgc	5	3	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102378930	A	A	102378930	1	1	57	0	1	0	0	0	0	0	0	0	5900	928	32	3		3	FGF14	13	102378930	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	657825	102378930	12790948	1721	64710											
SLC10A2	6555	broad.mit.edu	37	chr13	103718440	103718440	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctagaaatttcttgatttCcacgttgcatcccatggaga	7	11	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103718440	T	T	103718440	3	4	57	1	0	0	0	0	1	0	0	0	14487	864	30	4	910	4	SLC10A2	13	103718440	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1339510	103718440	11451438	1722	64711											
COL4A1	1282	broad.mit.edu	37	chr13	110828656	110828656	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatgtgaattcatgtgaaaGacacacgtgcctggattctg	12	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110828656	T	T	110828656	1	4	57	0	1	0	0	0	0	0	0	0	3721	957	33	3		3	COL4A1	13	110828656	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7110216	110828656	4341222	1723	64712											
COL4A2	1284	broad.mit.edu	37	chr13	111099270	111099270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacattctctcctgttagGgacacagagctatgaacttt	7	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111099270	T	T	111099270	1	4	57	0	1	0	0	0	0	0	0	0	3722	1247	43	2		2	COL4A2	13	111099270	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	270614	111099270	4070608	1724	64713											
ARHGEF7	8874	broad.mit.edu	37	chr13	111896374	111896374	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaccttaggctgttctcttCtattttcagagaatagaggg	9	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111896374	T	T	111896374	1	4	57	0	1	0	0	0	0	0	0	0	913	928	32	4		4	ARHGEF7	13	111896374	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	797104	111896374	3273504	1725	64714											
ARHGEF7	8874	broad.mit.edu	37	chr13	111896544	111896544	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttatttttcttggctctAggttaagttcagcaaacatt	7	7	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111896544	C	C	111896544	5	2	57	1	0	0	0	0	0	0	1	0	913	434	15	5	950	5	ARHGEF7	13	111896544	Splice_Site	SNP	A	TCGA-17-Z026-01A-01W-0746-08	170	111896544	3273334	1726	64715											
OR4Q3	441669	broad.mit.edu	37	chr14	20215648	20215648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggcctatcatcttcttGggagctgcagctatttctct	9	11	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20215648	T	T	20215648	3	4	57	1	0	0	0	0	1	0	0	0	11175	1357	47	2	64	2	OR4Q3	14	20215648	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08		20215648	87133892	1727	64716											
OR11H4	390442	broad.mit.edu	37	chr14	20711796	20711796	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcccaactttattgcagaaGatcctcacactggtatattc	5	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20711796	T	T	20711796	3	4	57	1	0	0	0	0	1	0	0	0	11022	933	33	3	848	3	OR11H4	14	20711796	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	496148	20711796	86637744	1728	64717											
PARP2	10038	broad.mit.edu	37	chr14	20824169	20824169	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccttgcgcccccttgaCcatgaaagttatgagttcaa	9	11	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20824169	T	T	20824169	2	4	57	1	0	0	0	0	0	0	0	1	11555	506	18	4		4	PARP2	14	20824169	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	112373	20824169	86525371	1729	64718											
TEP1	7011	broad.mit.edu	37	chr14	20858996	20858996	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcagtctgcttgggaaatCttcagaactgtgtattgtct	10	7	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20858996	A	A	20858996	1	1	57	0	1	0	0	0	0	0	0	0	15881	928	32	3		3	TEP1	14	20858996	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	34827	20858996	86490544	1730	64719											
RNASE10	338879	broad.mit.edu	37	chr14	20978753	20978753	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggagagtgatcaaccgctCaatgaattttggtccagtga	12	7	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20978753	T	T	20978753	2	4	57	1	0	0	0	0	0	0	0	1	13511	813	29	4		4	RNASE10	14	20978753	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	119757	20978753	86370787	1731	64720											
OR6S1	341799	broad.mit.edu	37	chr14	21109585	21109585	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaaatagtgtgttgccttGagaggaaattgctcagcatc	12	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21109585	C	C	21109585	4	2	57	1	0	0	0	0	0	1	0	0	11303	1294	45	4	733	4	OR6S1	14	21109585	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	130832	21109585	86239955	1732	64721											
TOX4	9878	broad.mit.edu	37	chr14	21963405	21963405	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggttgagtctccttctcaGatggatgttgaattggtgag	13	6	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21963405	A	A	21963405	2	1	57	1	0	0	0	0	0	0	0	1	16504	933	33	4		4	TOX4	14	21963405	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	853820	21963405	85386135	1733	64722											
OR4E2	26686	broad.mit.edu	37	chr14	22133668	22133668	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcgtatgatcgttacgtGgctatctgcactccactcca	10	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22133668	T	T	22133668	2	4	57	1	0	0	0	0	0	0	0	1	11154	1335	47	2		2	OR4E2	14	22133668	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	170263	22133668	85215872	1734	64723											
ABHD4	63874	broad.mit.edu	37	chr14	23072500	23072500	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcgatctgcttggcttcggGcgaagctcaaggccagcatt	12	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23072500	C	C	23072500	2	2	57	1	0	0	0	0	0	0	0	1	84	1190	42	4		4	ABHD4	14	23072500	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	938832	23072500	84277040	1735	64724											
RBM23	55147	broad.mit.edu	37	chr14	23374637	23374637	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgcgggcatcacgctcctCaggactcagattatcaactg	10	12	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23374637	G	G	23374637	3	3	57	1	0	0	0	0	1	0	0	0	13231	835	29	4	870	4	RBM23	14	23374637	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	302137	23374637	83974903	1736	64725											
MYH7	4625	broad.mit.edu	37	chr14	23902517	23902517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttaggagttggtgagtgaCagggcaatagtgctcaagag	17	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23902517	A	A	23902517	1	1	57	0	1	0	0	0	0	0	0	0	10133	493	17	3		3	MYH7	14	23902517	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	527880	23902517	83447023	1737	64726											
THTPA	79178	broad.mit.edu	37	chr14	24013155	24013155	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtaagttgcgtaaagtctCaatttagtctcttcatatag	8	6	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24013155	G	G	24013155	1	3	57	0	1	0	0	0	0	0	0	0	16004	841	29	4		4	THTPA	14	24013155	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	110638	24013155	83336385	1738	64727											
AP1G2	8906	broad.mit.edu	37	chr14	24030622	24030622	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccatccaggagatctagcaGatccaggagctgtgaggcct	12	12	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24030622	C	C	24030622	3	2	57	1	0	0	0	0	1	0	0	0	735	933	33	4	497	4	AP1G2	14	24030622	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	17467	24030622	83318918	1739	64728											
PCK2	5106	broad.mit.edu	37	chr14	24568634	24568634	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgccactaacccaggcctGatggcagggcaatcacttat	9	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24568634	C	C	24568634	1	2	57	0	1	0	0	0	0	0	0	0	11676	1305	45	4		4	PCK2	14	24568634	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	538012	24568634	82780906	1740	64729											
IRF9	10379	broad.mit.edu	37	chr14	24631142	24631147	+	Intron	DEL	TTGTTG	-	-													aaacaatgttttggggggttTtgttgttgttgttgttgttt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24631147	-	-	24631142	6	5	57	0	1	1	0	1	0	0	0	0	7907	1856	64	0		0	IRF9	14	24631142	Intron	DEL	TTGTTG	TCGA-17-Z026-01A-01W-0746-08	62508	24631142	82718398	1741	64730											
NFATC4	4776	broad.mit.edu	37	chr14	24845336	24845336	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggacagcccatggtggggGtatagggatatggggagctg	20	5	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24845336	C	C	24845336	1	2	57	0	1	0	0	0	0	0	0	0	10460	1276	44	4		4	NFATC4	14	24845336	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	214194	24845336	82504204	1742	64731											
PRKD1	5587	broad.mit.edu	37	chr14	30115098	30115098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattactgtctcacatcatcCtgtctcctccaaagtcatta	3	13	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30115098	A	A	30115098	1	1	57	0	1	0	0	0	0	0	0	0	12624	696	24	2		2	PRKD1	14	30115098	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5269762	30115098	77234442	1743	64732											
HECTD1	25831	broad.mit.edu	37	chr14	31613464	31613464	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttctcactctcaatacaCtaaaagaaaaaaaaatttaa	3	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31613464	A	A	31613464	5	1	57	1	0	0	0	0	0	0	1	0	7106	579	20	3	5309	3	HECTD1	14	31613464	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1498366	31613464	75736076	1744	64733											
ARHGAP5	394	broad.mit.edu	37	chr14	32563450	32563450	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaaagaaaaggaagacAtcgtggaagtgaagaagatc	11	4	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32563450	C	C	32563450	3	2	57	1	0	0	0	0	1	0	0	0	888	217	8	5	3577	5	ARHGAP5	14	32563450	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	949986	32563450	74786090	1745	64734											
AKAP6	9472	broad.mit.edu	37	chr14	32841195	32841195	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccctcttcctcccttctctCcttccttctctttttttttc	0	18	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32841195	G	G	32841195	1	3	57	0	1	0	0	0	0	0	0	0	455	870	30	4		4	AKAP6	14	32841195	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	277745	32841195	74508345	1746	64735											
AKAP6	9472	broad.mit.edu	37	chr14	33014719	33014719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctatctctaccaatggcaGtgaagcagttactgaggagg	11	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33014719	T	T	33014719	3	4	57	1	0	0	0	0	1	0	0	0	455	1029	36	3	870	3	AKAP6	14	33014719	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	173524	33014719	74334821	1747	64736											
BAZ1A	11177	broad.mit.edu	37	chr14	35262132	35262132	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttcctctaatacttctgtGaataaaatgtttaaaatgaa	5	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35262132	A	A	35262132	1	1	57	0	1	0	0	0	0	0	0	0	1334	1305	45	4		4	BAZ1A	14	35262132	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2247413	35262132	72087408	1748	64737											
RALGAPA1	253959	broad.mit.edu	37	chr14	36194252	36194252	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaaaagtggtcctgcaagtCgacctgccaaggtcatattt	11	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36194252	T	T	36194252	3	4	57	1	0	0	0	0	1	0	0	0	13121	884	31	4	4527	4	RALGAPA1	14	36194252	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	932120	36194252	71155288	1749	64738											
C14orf28	122525	broad.mit.edu	37	chr14	45373679	45373679	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcttaaatatgcaacattgGaaatctgaagatctggcgta	9	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45373679	A	A	45373679	4	1	57	1	0	0	0	0	0	1	0	0	1783	1183	41	4	706	4	C14orf28	14	45373679	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9179427	45373679	61975861	1750	64739											
PRPF39	55015	broad.mit.edu	37	chr14	45583383	45583383	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatatttttttctttcctttCaggcttctgaatgcttatga	6	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45583383	T	T	45583383	1	4	57	0	1	0	0	0	0	0	0	0	12675	841	29	4		4	PRPF39	14	45583383	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	209704	45583383	61766157	1751	64740											
FANCM	57697	broad.mit.edu	37	chr14	45628325	45628325	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acactactgaaaagaaacgtGatgagacccgagttatgatc	9	8	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45628325	T	T	45628325	3	4	57	1	0	0	0	0	1	0	0	0	5728	1290	45	3	1457	3	FANCM	14	45628325	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	44942	45628325	61721215	1752	64741											
KLHDC2	23588	broad.mit.edu	37	chr14	50246943	50246943	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttcagaattccacaaggCatatgcccagttggtcgatc	8	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50246943	T	T	50246943	2	4	57	1	0	0	0	0	0	0	0	1	8427	697	25	4		4	KLHDC2	14	50246943	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4618618	50246943	57102597	1753	64742											
SDCCAG1	9147	broad.mit.edu	37	chr14	50266423	50266423	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaataaacacaagggagtctCtactagcctgtaaaagacat	7	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50266423	G	G	50266423	1	3	57	0	1	0	0	0	0	0	0	0	14070	928	32	4		4	SDCCAG1	14	50266423	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	19480	50266423	57083117	1754	64743											
ATP5S	27109	broad.mit.edu	37	chr14	50789464	50789464	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accctatcgttttgctaataGaaaatgcagatgatttgcag	8	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50789464	C	C	50789464	1	2	57	0	1	0	0	0	0	0	0	0	1167	943	33	4		4	ATP5S	14	50789464	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	523041	50789464	56560076	1755	64744											
CDKL1	8814	broad.mit.edu	37	chr14	50802720	50802720	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catacttccactcatgctccAtagcttaaatatttctcttg	3	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50802720	G	G	50802720	2	3	57	1	0	0	0	0	0	0	0	1	3183	232	8	5		5	CDKL1	14	50802720	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	13256	50802720	56546820	1756	64745											
SAMD4A	23034	broad.mit.edu	37	chr14	55168881	55168881	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaacctcgacgcgaaagtaGaatatatgaaactgctgccc	9	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55168881	A	A	55168881	3	1	57	1	0	0	0	0	1	0	0	0	13932	943	33	4	301	4	SAMD4A	14	55168881	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4366161	55168881	52180659	1757	64746											
KTN1	3895	broad.mit.edu	37	chr14	56138593	56138593	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcacacaagactattaaaCaggtatttacaaaagaaaag	5	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56138593	G	G	56138593	3	3	57	1	0	0	0	0	1	0	0	0	8657	479	17	4	3671	4	KTN1	14	56138593	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	969712	56138593	51210947	1758	64747											
PELI2	57161	broad.mit.edu	37	chr14	56645017	56645017	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtttaaagcttgaaaaatCtgcagatagatgaactcttt	7	5	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56645017	A	A	56645017	1	1	57	0	1	0	0	0	0	0	0	0	11816	928	32	3		3	PELI2	14	56645017	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	506424	56645017	50704523	1759	64748											
EXOC5	10640	broad.mit.edu	37	chr14	57675355	57675355	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgtcgagcaaggcgggcaGatctataatcagcacgaagt	13	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57675355	A	A	57675355	3	1	57	1	0	0	0	0	1	0	0	0	5349	942	33	4	31	4	EXOC5	14	57675355	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1030338	57675355	49674185	1760	64749											
MUDENG	55745	broad.mit.edu	37	chr14	57749651	57749651	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttatccttttctttttaaaGaggtccaattacacatttgg	5	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57749651	C	C	57749651	5	2	57	1	0	0	0	0	0	0	1	0	10077	956	33	4	1106	4	MUDENG	14	57749651	Splice_Site	SNP	G	TCGA-17-Z026-01A-01W-0746-08	74296	57749651	49599889	1761	64750											
C14orf37	145407	broad.mit.edu	37	chr14	58599924	58599924	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggaacgtcagacacaggaGaggggtcctccttttcttcc	11	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58599924	A	A	58599924	3	1	57	1	0	0	0	0	1	0	0	0	1784	942	33	4	843	4	C14orf37	14	58599924	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	850273	58599924	48749616	1762	64751											
KCNH5	27133	broad.mit.edu	37	chr14	63447716	63447716	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgacctctccaccgggCcccacgaaagtcgtgtgaaa	10	13	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63447716	T	T	63447716	2	4	57	1	0	0	0	0	0	0	0	1	8105	726	26	4		4	KCNH5	14	63447716	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4847792	63447716	43901824	1763	64752											
PPP2R5E	5529	broad.mit.edu	37	chr14	63851087	63851087	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacaaggacagcatctGgcacataataaggctgaagg	11	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63851087	C	C	63851087	1	2	57	0	1	0	0	0	0	0	0	0	12497	1363	47	4		4	PPP2R5E	14	63851087	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	403371	63851087	43498453	1764	64753											
SYNE2	23224	broad.mit.edu	37	chr14	64407334	64407334	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttctttctttgatagctGaacaggaagacacccagaag	9	8	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64407334	A	A	64407334	3	1	57	1	0	0	0	0	1	0	0	0	15565	1291	45	4	88	4	SYNE2	14	64407334	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	556247	64407334	42942206	1765	64754											
SYNE2	23224	broad.mit.edu	37	chr14	64447873	64447874	+	Missense_Mutation	DNP	GA	TC	TC													gcttgctttgaggagacaaaGaaggaagaaattaaagaggt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	64447874	TC	TC	64447873	3	4	57	1	0	0	0	0	1	0	0	0	15565	933	33	3	1876	3	SYNE2	14	64447873	Missense_Mutation	DNP	GA	TCGA-17-Z026-01A-01W-0746-08	40539	64447873	42901667	1766	64755											
SYNE2	23224	broad.mit.edu	37	chr14	64449499	64449499	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagatggagaaagttggtttCaaaaactcaacttgtaagtt	9	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64449499	G	G	64449499	4	3	57	1	0	0	0	0	0	1	0	0	15565	838	29	4	2050	4	SYNE2	14	64449499	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1626	64449499	42900041	1767	64756											
SYNE2	23224	broad.mit.edu	37	chr14	64473854	64473854	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctaattctcttccacacttCaaagatggcagagaaaaaac	6	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64473854	G	G	64473854	3	3	57	1	0	0	0	0	1	0	0	0	15565	825	29	4	4609	4	SYNE2	14	64473854	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	24355	64473854	42875686	1768	64757											
SYNE2	23224	broad.mit.edu	37	chr14	64635582	64635582	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagctgatattttctgcttgGactcatatacagatgttaga	8	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64635582	T	T	64635582	1	4	57	0	1	0	0	0	0	0	0	0	15565	1189	41	3		3	SYNE2	14	64635582	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	161728	64635582	42713958	1769	64758											
ZFYVE26	23503	broad.mit.edu	37	chr14	68244283	68244283	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgtatccttaccttggatCccacatacagcgcctggatt	9	12	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68244283	T	T	68244283	3	4	57	1	0	0	0	0	1	0	0	0	17794	855	30	4	2724	4	ZFYVE26	14	68244283	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3608701	68244283	39105257	1770	64759											
ZFYVE26	23503	broad.mit.edu	37	chr14	68249644	68249644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactcagtacatctagggCaatgggagaatgtaggccca	11	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68249644	A	A	68249644	3	1	57	1	0	0	0	0	1	0	0	0	17794	710	25	3	3482	3	ZFYVE26	14	68249644	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5361	68249644	39099896	1771	64760											
RAD51L1	5890	broad.mit.edu	37	chr14	68935686	68935686	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccagaaagcaattaacatGaaggggtaaattccagcact	8	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68935686	A	A	68935686	1	1	57	0	1	0	0	0	0	0	0	0	13097	1305	45	4		4	RAD51L1	14	68935686	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	686042	68935686	38413854	1772	64761											
DCAF5	8816	broad.mit.edu	37	chr14	69551229	69551229	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggcccggcaaggatttctCtgaaaaaggagccattgtat	11	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69551229	T	T	69551229	1	4	57	0	1	0	0	0	0	0	0	0	4306	928	32	4		4	DCAF5	14	69551229	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	615543	69551229	37798311	1773	64762											
DCAF5	8816	broad.mit.edu	37	chr14	69551564	69551564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagcaagagaactggaCattactgaagtcaactggat	12	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69551564	T	T	69551564	1	4	57	0	1	0	0	0	0	0	0	0	4306	493	17	4		4	DCAF5	14	69551564	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	335	69551564	37797976	1774	64763											
GALNTL1	57452	broad.mit.edu	37	chr14	69798015	69798015	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttgggtgtggtgatgcagGacagctgccaggagcctgcc	17	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69798015	C	C	69798015	1	2	57	0	1	0	0	0	0	0	0	0	6283	1189	41	4		4	GALNTL1	14	69798015	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	246451	69798015	37551525	1775	64764											
GALNTL1	57452	broad.mit.edu	37	chr14	69798085	69798085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggaagtgctgagtgccCcatgtctcagagaggccttc	13	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69798085	A	A	69798085	1	1	57	0	1	0	0	0	0	0	0	0	6283	638	22	2		2	GALNTL1	14	69798085	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	70	69798085	37551455	1776	64765											
SLC39A9	55334	broad.mit.edu	37	chr14	69924955	69924955	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttaaagttgctgtgttctCtagatgtccccagtgtccta	8	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69924955	T	T	69924955	1	4	57	0	1	0	0	0	0	0	0	0	14739	928	32	4		4	SLC39A9	14	69924955	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	126870	69924955	37424585	1777	64766											
SMOC1	64093	broad.mit.edu	37	chr14	70352839	70352839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaccttctttcccttggCcttctttcctttcggcatct	5	16	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70352839	A	A	70352839	1	1	57	0	1	0	0	0	0	0	0	0	14915	754	26	3		3	SMOC1	14	70352839	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	427884	70352839	36996701	1778	64767											
SMOC1	64093	broad.mit.edu	37	chr14	70477403	70477403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacttactttggatgctGggcacagaagacaggagtgt	13	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70477403	T	T	70477403	1	4	57	0	1	0	0	0	0	0	0	0	14915	1363	47	2		2	SMOC1	14	70477403	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	124564	70477403	36872137	1779	64768											
ADAM21	8747	broad.mit.edu	37	chr14	70926066	70926066	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgtgtgtggcccaggaaAgatctgcatccataagaagt	11	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70926066	T	T	70926066	3	4	57	1	0	0	0	0	1	0	0	0	243	72	3	5	1852	5	ADAM21	14	70926066	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	448663	70926066	36423474	1780	64769											
ADAM21	8747	broad.mit.edu	37	chr14	70926203	70926203	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtccccaccctactgcCagcacagaggctatgggggc	14	14	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70926203	A	A	70926203	3	1	57	1	0	0	0	0	1	0	0	0	243	595	21	2	1989	2	ADAM21	14	70926203	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	137	70926203	36423337	1781	64770											
PCNX	22990	broad.mit.edu	37	chr14	71570074	71570074	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtgaattttattcttGgccccttaacctaattccct	4	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71570074	C	C	71570074	1	2	57	0	1	0	0	0	0	0	0	0	11685	1363	47	4		4	PCNX	14	71570074	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	643871	71570074	35779466	1782	64771											
RGS6	9628	broad.mit.edu	37	chr14	72751215	72751215	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcttccacgtgggcacacAgaagttaagaattgagtttt	10	8	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72751215	T	T	72751215	1	4	57	0	1	0	0	0	0	0	0	0	13418	203	7	5		5	RGS6	14	72751215	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1181141	72751215	34598325	1783	64772											
RGS6	9628	broad.mit.edu	37	chr14	72944962	72944962	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggtcttaacatctgtgttCtctattttcccagataacat	5	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72944962	T	T	72944962	1	4	57	0	1	0	0	0	0	0	0	0	13418	928	32	4		4	RGS6	14	72944962	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	193747	72944962	34404578	1784	64773											
HEATR4	399671	broad.mit.edu	37	chr14	73945483	73945483	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtgatgaacgaactttgCttcgtgtggttaggcctggg	14	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73945483	T	T	73945483	3	4	57	1	0	0	0	0	1	0	0	0	7097	797	28	4	175	4	HEATR4	14	73945483	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1000521	73945483	33404057	1785	64774											
C14orf43	91748	broad.mit.edu	37	chr14	74203714	74203714	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatacctgagcttgagcaTctgtcccggggattcgggtg	13	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74203714	A	A	74203714	3	1	57	1	0	0	0	0	1	0	0	0	1787	1435	50	5	1441	5	C14orf43	14	74203714	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	258231	74203714	33145826	1786	64775											
YLPM1	56252	broad.mit.edu	37	chr14	75266344	75266344	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggaggggtaatggttctCagtcagaggcagcatgaaat	14	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75266344	G	G	75266344	2	3	57	1	0	0	0	0	0	0	0	1	17613	813	29	4		4	YLPM1	14	75266344	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1062630	75266344	32083196	1787	64776											
TTLL5	23093	broad.mit.edu	37	chr14	76201685	76201685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttactgggaagtggcgGctgatgtaactgtgggagca	17	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76201685	T	T	76201685	1	4	57	0	1	0	0	0	0	0	0	0	16856	1218	42	3		3	TTLL5	14	76201685	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	935341	76201685	31147855	1788	64777											
TTLL5	23093	broad.mit.edu	37	chr14	76238103	76238103	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaggcccgaatagcattctCtgcctatctccagcatgttc	8	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76238103	G	G	76238103	3	3	57	1	0	0	0	0	1	0	0	0	16856	913	32	4	2120	4	TTLL5	14	76238103	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	36418	76238103	31111437	1789	64778											
NRXN3	9369	broad.mit.edu	37	chr14	79276601	79276601	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggactgattgtttttggatGtctgcagctgttaccttgaa	11	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79276601	A	A	79276601	1	1	57	0	1	0	0	0	0	0	0	0	10762	1392	48	4		4	NRXN3	14	79276601	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3038498	79276601	28072939	1790	64779											
NRXN3	9369	broad.mit.edu	37	chr14	79947244	79947244	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagtttcctgaggcctcccCagccatgcttcctatatacc	6	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79947244	T	T	79947244	1	4	57	0	1	0	0	0	0	0	0	0	10762	609	21	4		4	NRXN3	14	79947244	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	670643	79947244	27402296	1791	64780											
GALC	2581	broad.mit.edu	37	chr14	88450887	88450887	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatggcaaccctgcagagaGaagggaggaggcaaaggtag	16	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88450887	A	A	88450887	1	1	57	0	1	0	0	0	0	0	0	0	6263	957	33	4		4	GALC	14	88450887	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	8503643	88450887	18898653	1792	64781											
KCNK10	54207	broad.mit.edu	37	chr14	88658510	88658510	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcgattgcgaaaagcacaGccaacagattatttttcccg	7	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88658510	A	A	88658510	1	1	57	0	1	0	0	0	0	0	0	0	8129	986	34	4		4	KCNK10	14	88658510	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	207623	88658510	18691030	1793	64782											
PSMC1	5700	broad.mit.edu	37	chr14	90735690	90735690	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttgctgtaattccccttGagcaggcgatcagttgagtc	10	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90735690	C	C	90735690	1	2	57	0	1	0	0	0	0	0	0	0	12791	1305	45	4		4	PSMC1	14	90735690	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2077180	90735690	16613850	1794	64783											
KIAA1409	57578	broad.mit.edu	37	chr14	94087358	94087358	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcagcaaaatggtgaaatAtcagccggttgagatgaatg	13	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94087358	G	G	94087358	1	3	57	0	1	0	0	0	0	0	0	0	8300	464	16	5		5	KIAA1409	14	94087358	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	3351668	94087358	13262182	1795	64784											
KIAA1409	57578	broad.mit.edu	37	chr14	94088193	94088193	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgacccaagctgcgtatatCgcacaaagaccaaacgaccc	7	16	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94088193	A	A	94088193	2	1	57	1	0	0	0	0	0	0	0	1	8300	874	31	3		3	KIAA1409	14	94088193	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	835	94088193	13261347	1796	64785											
KIAA1409	57578	broad.mit.edu	37	chr14	94101080	94101080	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttaaagaatagattttctCtcatgttctttggttcaggt	8	5	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94101080	A	A	94101080	1	1	57	0	1	0	0	0	0	0	0	0	8300	928	32	3		3	KIAA1409	14	94101080	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12887	94101080	13248460	1797	64786											
KIAA1409	57578	broad.mit.edu	37	chr14	94120142	94120142	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcagttcctgcgctgcatCttccatcagttggcccccaa	8	15	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94120142	G	G	94120142	3	3	57	1	0	0	0	0	1	0	0	0	8300	903	32	4	5858	4	KIAA1409	14	94120142	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	19062	94120142	13229398	1798	64787											
KIAA1409	57578	broad.mit.edu	37	chr14	94158368	94158368	+	Intron	SNP	T	A	A													ctcctaatcctcacactcccTgttttcacagatctcagttg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94158368	A	A	94158368	1	1	57	0	1	0	0	0	0	0	0	0	8300	1595	55	5		5	KIAA1409	14	94158368	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	38226	94158368	13191172	1799	64788	300	2									
KIAA1409	57578	broad.mit.edu	37	chr14	94158370	94158370	+	Intron	SNP	T	A	A													cctaatcctcacactccctgTtttcacagatctcagttgta							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94158370	A	A	94158370	1	1	57	0	1	0	0	0	0	0	0	0	8300	1740	60	5		5	KIAA1409	14	94158370	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2	94158370	13191170	1800	64789	300	2									
ASB2	51676	broad.mit.edu	37	chr14	94420759	94420759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctctgcgagattcttccCttccttgatcatggtcttca	9	12	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94420759	A	A	94420759	3	1	57	1	0	0	0	0	1	0	0	0	1027	681	24	2	1553	2	ASB2	14	94420759	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	262389	94420759	12928781	1801	64790											
SERPINA12	145264	broad.mit.edu	37	chr14	94955987	94955987	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcaggctgcgatgaggggcGatcttggtgagatcaccatg	15	8	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94955987	C	C	94955987	3	2	57	1	0	0	0	0	1	0	0	0	14202	1048	37	4	229	4	SERPINA12	14	94955987	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	535228	94955987	12393553	1802	64791											
BDKRB2	624	broad.mit.edu	37	chr14	96706538	96706538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacatgaggcccccgtttAgatccaaggatcagaggggg	14	9	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96706538	G	G	96706538	1	3	57	0	1	0	0	0	0	0	0	0	1398	435	15	5		5	BDKRB2	14	96706538	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1750551	96706538	10643002	1803	64792											
ATG2B	55102	broad.mit.edu	37	chr14	96775859	96775859	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccatagcatcactcatcaGatctcgtaacatttgttgat	5	11	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96775859	A	A	96775859	2	1	57	1	0	0	0	0	0	0	0	1	1098	933	33	4		4	ATG2B	14	96775859	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	69321	96775859	10573681	1804	64793											
PAPOLA	10914	broad.mit.edu	37	chr14	97018784	97018784	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacatttggatgaaataaaGatatatttgataaaatgttt	6	2	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97018784	T	T	97018784	1	4	57	0	1	0	0	0	0	0	0	0	11523	957	33	3		3	PAPOLA	14	97018784	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	242925	97018784	10330756	1805	64794											
C14orf177	283598	broad.mit.edu	37	chr14	99183212	99183212	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaaatgagataagcatttGatagagcaatttaccatagc	7	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99183212	C	C	99183212	1	2	57	0	1	0	0	0	0	0	0	0	1773	1305	45	4		4	C14orf177	14	99183212	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2164428	99183212	8166328	1806	64795											
BCL11B	64919	broad.mit.edu	37	chr14	99723739	99723740	+	Intron	DNP	AC	TA	TA													gccttcccctgcaccagcacActcaggcagagggcatggga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	99723740	TA	TA	99723739	1	4	57	0	1	0	0	0	0	0	0	0	1369	174	6	5		5	BCL11B	14	99723739	Intron	DNP	AC	TCGA-17-Z026-01A-01W-0746-08	540527	99723739	7625801	1807	64796											
DYNC1H1	1778	broad.mit.edu	37	chr14	102498629	102498629	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgaagtcgatcaagaagCagcacctggtggaggtgagg	16	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102498629	T	T	102498629	4	4	57	1	0	0	0	0	0	1	0	0	4881	711	25	4	10110	4	DYNC1H1	14	102498629	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2774890	102498629	4850911	1808	64797											
HSP90AA1	3320	broad.mit.edu	37	chr14	102550063	102550063	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttctttacaaagactttCtgaattaaaaaaaaaaaaaa	3	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102550063	A	A	102550063	1	1	57	0	1	0	0	0	0	0	0	0	7470	928	32	3		3	HSP90AA1	14	102550063	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	51434	102550063	4799477	1809	64798											
CDC42BPB	9578	broad.mit.edu	37	chr14	103450009	103450009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagtcacactcaggccCgtatttgcccatgccgtcct	7	18	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103450009	A	A	103450009	3	1	57	1	0	0	0	0	1	0	0	0	3103	652	23	1	4484	1	CDC42BPB	14	103450009	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	899946	103450009	3899531	1810	64799											
TDRD9	122402	broad.mit.edu	37	chr14	104470694	104470694	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taattcactttggtcattgtCaaagtttatttatttattta	4	4	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104470694	T	T	104470694	1	4	57	0	1	0	0	0	0	0	0	0	15858	841	29	4		4	TDRD9	14	104470694	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1020685	104470694	2878846	1811	64800											
OR4N4	283694	broad.mit.edu	37	chr15	22333006	22333006	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctatgtggtagaggtgctGatgatagccaacagtggtct	13	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22333006	T	T	22333006	1	4	57	0	1	0	0	0	0	0	0	0	11172	1305	45	3		3	OR4N4	15	22333006	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08		22333006	80198386	1812	64801											
OR4M2	390538	broad.mit.edu	37	chr15	22369079	22369079	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcattgttcgacttcctttCtgtgggcccaatgagttaga	9	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22369079	T	T	22369079	2	4	57	1	0	0	0	0	0	0	0	1	11170	912	32	4		4	OR4M2	15	22369079	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	36073	22369079	80162313	1813	64802											
TUBGCP5	114791	broad.mit.edu	37	chr15	22836190	22836190	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtatgccttcaattatgaGatctccactgtgtattttac	7	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22836190	T	T	22836190	1	4	57	0	1	0	0	0	0	0	0	0	16895	957	33	3		3	TUBGCP5	15	22836190	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	467111	22836190	79695202	1814	64803											
ATP10A	57194	broad.mit.edu	37	chr15	25925268	25925268	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcccgctccgacacccacCtgggcagcagtgcagcgaca	10	17	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25925268	T	T	25925268	3	4	57	1	0	0	0	0	1	0	0	0	1120	695	24	4	641	4	ATP10A	15	25925268	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3089078	25925268	76606124	1815	64804											
GABRG3	2567	broad.mit.edu	37	chr15	27636063	27636063	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaacatggtgcaatgcCatctctactaaaaatacaaa	6	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27636063	A	A	27636063	1	1	57	0	1	0	0	0	0	0	0	0	6233	609	21	2		2	GABRG3	15	27636063	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1710795	27636063	74895329	1816	64805											
GABRG3	2567	broad.mit.edu	37	chr15	27722737	27722737	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcttagtaataacgacatGattaatcaattgtaaccaat	4	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27722737	T	T	27722737	1	4	57	0	1	0	0	0	0	0	0	0	6233	1305	45	3		3	GABRG3	15	27722737	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	86674	27722737	74808655	1817	64806											
HERC2	8924	broad.mit.edu	37	chr15	28361810	28361810	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagcggccgagaagctcaCccaggaagcggaacatgctg	13	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28361810	A	A	28361810	5	1	57	1	0	0	0	0	0	0	1	0	7125	521	18	3	918	3	HERC2	15	28361810	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	639073	28361810	74169582	1818	64807											
MTMR15	22909	broad.mit.edu	37	chr15	31234283	31234283	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgtagcttttctatacaGaagagattttattatgttcc	7	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31234283	T	T	31234283	1	4	57	0	1	0	0	0	0	0	0	0	10037	957	33	3		3	MTMR15	15	31234283	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2872473	31234283	71297109	1819	64808											
FMN1	342184	broad.mit.edu	37	chr15	33261734	33261734	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttattaagaacaaacttaaGaatttagaaactcaataata	3	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33261734	A	A	33261734	1	1	57	0	1	0	0	0	0	0	0	0	6007	957	33	4		4	FMN1	15	33261734	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2027451	33261734	69269658	1820	64809											
RYR3	6263	broad.mit.edu	37	chr15	33928134	33928134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagtgagtgaccaccacCactggctaatgtagacattg	9	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33928134	A	A	33928134	1	1	57	0	1	0	0	0	0	0	0	0	13881	609	21	2		2	RYR3	15	33928134	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	666400	33928134	68603258	1821	64810											
RYR3	6263	broad.mit.edu	37	chr15	34102816	34102816	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtactccaggcgaccaggAgctgatctccctcgcaaaat	10	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34102816	T	T	34102816	3	4	57	1	0	0	0	0	1	0	0	0	13881	304	11	5	10445	5	RYR3	15	34102816	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	174682	34102816	68428576	1822	64811											
PGBD4	161779	broad.mit.edu	37	chr15	34396158	34396158	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctgttcaagaaggataatCctgagcacacgatgagccat	9	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34396158	G	G	34396158	3	3	57	1	0	0	0	0	1	0	0	0	11878	855	30	4	1428	4	PGBD4	15	34396158	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	293342	34396158	68135234	1823	64812											
AQR	9716	broad.mit.edu	37	chr15	35192825	35192825	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acccagttctgactttacctGaaagggggtatttgtagagc	11	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35192825	A	A	35192825	2	1	57	1	0	0	0	0	0	0	0	1	837	1281	45	4		4	AQR	15	35192825	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	796667	35192825	67338567	1824	64813											
MEIS2	4212	broad.mit.edu	37	chr15	37187052	37187052	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaagaagaggccggaaaatCagcaataattgatggtgaaa	11	6	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37187052	A	A	37187052	1	1	57	0	1	0	0	0	0	0	0	0	9561	841	29	3		3	MEIS2	15	37187052	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1994227	37187052	65344340	1825	64814											
PLA2G4E	123745	broad.mit.edu	37	chr15	42293397	42293397	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctggattgtgcatgaacctCcaggcaggagacttgtcgag	13	10	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42293397	G	G	42293397	3	3	57	1	0	0	0	0	1	0	0	0	12100	864	30	4	2031	4	PLA2G4E	15	42293397	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5106345	42293397	60237995	1826	64815											
MAP1A	4130	broad.mit.edu	37	chr15	43819801	43819801	+	Frame_Shift_Del	DEL	C	-	-													ccctggcaggacccactgtaCccccaaggccagagccaggg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43819801	-	-	43819801	7	5	57	1	0	1	0	1	0	0	0	0	9319	507	18	0	6132	0	MAP1A	15	43819801	Frame_Shift_Del	DEL	C	TCGA-17-Z026-01A-01W-0746-08	1526404	43819801	58711591	1827	64816											
SLC12A1	6557	broad.mit.edu	37	chr15	48539034	48539034	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagggggaaaaaatgtagTtgaaagccgtttgcttatga	13	4	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48539034	A	A	48539034	1	1	57	0	1	0	0	0	0	0	0	0	14495	1740	60	5		5	SLC12A1	15	48539034	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	4719233	48539034	53992358	1828	64817											
FBN1	2200	broad.mit.edu	37	chr15	48905343	48905343	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaagaagaagaggaagaGatggccaaataaaaggaaaa	11	2	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48905343	A	A	48905343	1	1	57	0	1	0	0	0	0	0	0	0	5759	957	33	4		4	FBN1	15	48905343	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	366309	48905343	53626049	1829	64818											
CEP152	22995	broad.mit.edu	37	chr15	49090224	49090224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcatccagcatgtcatgggGaaggtctgtgagtaactgct	13	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49090224	A	A	49090224	3	1	57	1	0	0	0	0	1	0	0	0	3278	1174	41	4	4948	4	CEP152	15	49090224	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	184881	49090224	53441168	1830	64819											
HDC	3067	broad.mit.edu	37	chr15	50540394	50540394	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accagccttcctcgccatgaGaaaacagaggaacacaggct	9	13	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50540394	A	A	50540394	1	1	57	0	1	0	0	0	0	0	0	0	7082	957	33	4		4	HDC	15	50540394	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1450170	50540394	51990998	1831	64820											
MYO5A	4644	broad.mit.edu	37	chr15	52720630	52720630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtttggaatcaataaagCggactctgagattatggagc	11	5	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52720630	A	A	52720630	3	1	57	1	0	0	0	0	1	0	0	0	10172	768	27	3	5448	3	MYO5A	15	52720630	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2180236	52720630	49810762	1832	64821											
KIAA1370	56204	broad.mit.edu	37	chr15	52901619	52901619	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggatatgtgatgctgttgGatcaatgtgctccaagtgtt	14	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52901619	C	C	52901619	3	2	57	1	0	0	0	0	1	0	0	0	8296	1174	41	4	1770	4	KIAA1370	15	52901619	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	180989	52901619	49629773	1833	64822											
MNS1	55329	broad.mit.edu	37	chr15	56756253	56756253	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcctcttccatatccaactCaaattgttcattttgtaata	4	10	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56756253	G	G	56756253	3	3	57	1	0	0	0	0	1	0	0	0	9771	835	29	4	1327	4	MNS1	15	56756253	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3854634	56756253	45775139	1834	64823											
AQP9	366	broad.mit.edu	37	chr15	58476266	58476266	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatccaccatccagagcctGactcagtctttaagacagaa	6	12	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58476266	T	T	58476266	3	4	57	1	0	0	0	0	1	0	0	0	835	1290	45	3	842	3	AQP9	15	58476266	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1720013	58476266	44055126	1835	64824											
LIPC	3990	broad.mit.edu	37	chr15	58834726	58834726	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcccccatcccgctgctgtCttccaggaatctgtgcaact	8	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58834726	T	T	58834726	1	4	57	0	1	0	0	0	0	0	0	0	8893	928	32	4		4	LIPC	15	58834726	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	358460	58834726	43696666	1836	64825											
MYO1E	4643	broad.mit.edu	37	chr15	59480399	59480399	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctttcagacccaaatattCgacttgatgctttaccctgt	5	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59480399	A	A	59480399	4	1	57	1	0	0	0	0	0	1	0	0	10166	893	31	3	1548	3	MYO1E	15	59480399	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	645673	59480399	43050993	1837	64826											
MYO1E	4643	broad.mit.edu	37	chr15	59528895	59528895	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaagacagacaaagaatCcacctgagaagtggattgcg	11	7	0	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59528895	A	A	59528895	1	1	57	0	1	0	0	0	0	0	0	0	10166	870	30	3		3	MYO1E	15	59528895	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	48496	59528895	43002497	1838	64827											
VPS13C	54832	broad.mit.edu	37	chr15	62221815	62221815	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaaatctgccacagtcatCagaaattccacactggcaca	6	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62221815	T	T	62221815	2	4	57	1	0	0	0	0	0	0	0	1	17318	813	29	4		4	VPS13C	15	62221815	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2692920	62221815	40309577	1839	64828											
CLPX	10845	broad.mit.edu	37	chr15	65447416	65447416	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatggtgttccaaatccaaGatactgccaaagaaatgatg	9	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65447416	T	T	65447416	3	4	57	1	0	0	0	0	1	0	0	0	3588	942	33	3	602	3	CLPX	15	65447416	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3225601	65447416	37083976	1840	64829											
TLE3	7090	broad.mit.edu	37	chr15	70342662	70342662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcggcaacaattgccctcCtctgcccctctctgatgctc	6	18	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70342662	A	A	70342662	1	1	57	0	1	0	0	0	0	0	0	0	16063	696	24	2		2	TLE3	15	70342662	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4895246	70342662	32188730	1841	64830											
LINGO1	84894	broad.mit.edu	37	chr15	77907523	77907523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgggagatctccaagacCttgagtcggtacagcctctt	11	11	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77907523	A	A	77907523	3	1	57	1	0	0	0	0	1	0	0	0	8887	680	24	2	1140	2	LINGO1	15	77907523	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7564861	77907523	24623869	1842	64831											
KIAA1024	23251	broad.mit.edu	37	chr15	79749185	79749185	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagaccaggactccctgccCatcaatcagagcatcaagga	8	14	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79749185	T	T	79749185	2	4	57	1	0	0	0	0	0	0	0	1	8275	581	21	4		4	KIAA1024	15	79749185	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1841662	79749185	22782207	1843	64832											
KIAA1024	23251	broad.mit.edu	37	chr15	79749266	79749266	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtccagaaaaggaatatCttcaaagaggattttcacaa	8	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79749266	G	G	79749266	3	3	57	1	0	0	0	0	1	0	0	0	8275	903	32	4	779	4	KIAA1024	15	79749266	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	81	79749266	22782126	1844	64833											
TMC3	342125	broad.mit.edu	37	chr15	81638860	81638860	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctagagcccccacatggttCtaaagactgtcatggatata	8	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81638860	G	G	81638860	1	3	57	0	1	0	0	0	0	0	0	0	16109	928	32	4		4	TMC3	15	81638860	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1889594	81638860	20892532	1845	64834											
AP3B2	8120	broad.mit.edu	37	chr15	83360478	83360478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcccatcacctgtctcaGtagggcctgaaaggagagaa	10	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83360478	T	T	83360478	1	4	57	0	1	0	0	0	0	0	0	0	747	1044	36	3		3	AP3B2	15	83360478	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1721618	83360478	19170914	1846	64835											
BNC1	646	broad.mit.edu	37	chr15	83926518	83926518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttcccatcactgtcctcCataagcacagtgccttcctc	5	17	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83926518	A	A	83926518	3	1	57	1	0	0	0	0	1	0	0	0	1480	594	21	2	327	2	BNC1	15	83926518	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	566040	83926518	18604874	1847	64836											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84365064	84365064	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggccttgacctcctggacTcaagtgatcctcctgcctcg	10	16	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84365064	A	A	84365064	1	1	57	0	1	0	0	0	0	0	0	0	276	1566	54	5		5	ADAMTSL3	15	84365064	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	438546	84365064	18166328	1848	64837											
AKAP13	11214	broad.mit.edu	37	chr15	86087238	86087238	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccccagccccaccccCgattcataggagtaccaccc	5	21	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86087238	G	G	86087238	1	3	57	0	1	0	0	0	0	0	0	0	449	667	23	4		4	AKAP13	15	86087238	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1722174	86087238	16444154	1849	64838											
AKAP13	11214	broad.mit.edu	37	chr15	86182602	86182602	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgtgttttctttttctttCagataaaccgagaaaactgg	7	7	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86182602	G	G	86182602	1	3	57	0	1	0	0	0	0	0	0	0	449	841	29	4		4	AKAP13	15	86182602	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	95364	86182602	16348790	1850	64839											
AGBL1	123624	broad.mit.edu	37	chr15	86823128	86823128	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcagaggggaatgtaggGgaactacagccttcctaaag	15	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86823128	C	C	86823128	1	2	57	0	1	0	0	0	0	0	0	0	375	1247	43	4		4	AGBL1	15	86823128	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	640526	86823128	15708264	1851	64840											
AGBL1	123624	broad.mit.edu	37	chr15	86898139	86898139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagaagagatgtggaagCcagaaaggctaaaagcatga	14	5	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86898139	A	A	86898139	1	1	57	0	1	0	0	0	0	0	0	0	375	754	26	3		3	AGBL1	15	86898139	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	75011	86898139	15633253	1852	64841											
NTRK3	4916	broad.mit.edu	37	chr15	88575885	88575885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattcagacccacaggacCcccttcgcagaggactctgg	10	15	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88575885	A	A	88575885	1	1	57	0	1	0	0	0	0	0	0	0	10803	638	22	2		2	NTRK3	15	88575885	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1677746	88575885	13955507	1853	64842											
FANCI	55215	broad.mit.edu	37	chr15	89824528	89824528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggctgcttaaggcagtGcaggtaagtcttcagattcc	11	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89824528	T	T	89824528	2	4	57	1	0	0	0	0	0	0	0	1	5726	1306	46	3		3	FANCI	15	89824528	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1248643	89824528	12706864	1854	64843											
SV2B	9899	broad.mit.edu	37	chr15	91832754	91832754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaactccctctgcaggtgGctccatgctaatctctgcag	9	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91832754	T	T	91832754	3	4	57	1	0	0	0	0	1	0	0	0	15536	1203	42	3	1754	3	SV2B	15	91832754	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2008226	91832754	10698638	1855	64844											
MCTP2	55784	broad.mit.edu	37	chr15	95019879	95019882	+	Intron	DEL	AGAC	-	-													agatagatagatagatagatAgacagacagacagataaaga					rs28760289	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95019882	-	-	95019879	6	5	57	0	1	1	0	1	0	0	0	0	9494	435	15	0		0	MCTP2	15	95019879	Intron	DEL	AGAC	TCGA-17-Z026-01A-01W-0746-08	3187125	95019879	7511513	1856	64845											
FAM169B	283777	broad.mit.edu	37	chr15	98984376	98984376	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgacggctcacgtcctcgGaatttcctgggtgtgctgcc	12	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98984376	A	A	98984376	3	1	57	1	0	0	0	0	1	0	0	0	5533	1174	41	4	203	4	FAM169B	15	98984376	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3964497	98984376	3547016	1857	64846											
IGF1R	3480	broad.mit.edu	37	chr15	99465260	99465260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgagttcttacctaaggGggctcaatagctccttctat	8	10	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99465260	T	T	99465260	1	4	57	0	1	0	0	0	0	0	0	0	7641	1247	43	2		2	IGF1R	15	99465260	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	480884	99465260	3066132	1858	64847											
LRRC28	123355	broad.mit.edu	37	chr15	99828101	99828101	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcccagaaattggtcgtctGagagctttacgtcatcttcg	10	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99828101	T	T	99828101	2	4	57	1	0	0	0	0	0	0	0	1	9069	1277	45	3		3	LRRC28	15	99828101	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	362841	99828101	2703291	1859	64848											
ADAMTS17	170691	broad.mit.edu	37	chr15	100672149	100672149	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgctttgtgtgaggcagcGagagctgctgttgggaaact	15	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100672149	A	A	100672149	1	1	57	0	1	0	0	0	0	0	0	0	262	1073	37	4		4	ADAMTS17	15	100672149	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	844048	100672149	1859243	1860	64849											
ASB7	140460	broad.mit.edu	37	chr15	101152681	101152681	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatggagaaacataaatgAtgtttagtttaaaatgtgtc	8	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101152681	T	T	101152681	1	4	57	0	1	0	0	0	0	0	0	0	1032	348	12	5		5	ASB7	15	101152681	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	480532	101152681	1378711	1861	64850											
CHSY1	22856	broad.mit.edu	37	chr15	101717888	101717888	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaacatcaaagccacccactCggacaagatctcccttataa	4	14	2	1	rs62621399	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101717888	G	G	101717888	3	3	57	1	0	0	0	0	1	0	0	0	3443	884	31	4	298	4	CHSY1	15	101717888	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	565207	101717888	813504	1862	64851											
LUC7L	55692	broad.mit.edu	37	chr16	255975	255975	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccaaattactaagatttctCttgccctaaggcacttatct	5	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	255975	G	G	255975	1	3	57	0	1	0	0	0	0	0	0	0	9169	928	32	4		4	LUC7L	16	255975	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08		255975	90098778	1863	64852											
CLCN7	1186	broad.mit.edu	37	chr16	1510495	1510495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccacagcaacagggagaagGacagtccgcccttctctgtg	11	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1510495	A	A	1510495	3	1	57	1	0	0	0	0	1	0	0	0	3499	1174	41	4	1979	4	CLCN7	16	1510495	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1254520	1510495	88844258	1864	64853											
TSC2	7249	broad.mit.edu	37	chr16	2105464	2105465	+	Missense_Mutation	DNP	GA	TT	TT													gaattccttctggtgctggtGaacttggtcaaattcaatag							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2105465	TT	TT	2105464	3	4	57	1	0	0	0	0	1	0	0	0	16731	1277	45	3	561	3	TSC2	16	2105464	Missense_Mutation	DNP	GA	TCGA-17-Z026-01A-01W-0746-08	594969	2105464	88249289	1865	64854											
PRSS27	83886	broad.mit.edu	37	chr16	2763993	2763993	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caacaggaagattgtgggttCagagtggtccccaagccgtc	13	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2763993	T	T	2763993	1	4	57	0	1	0	0	0	0	0	0	0	12727	841	29	4		4	PRSS27	16	2763993	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	658529	2763993	87590760	1866	64855											
SRRM2	23524	broad.mit.edu	37	chr16	2812541	2812541	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagacgtggccgctcacgctCtagaaccccagctagacgca	10	16	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2812541	T	T	2812541	3	4	57	1	0	0	0	0	1	0	0	0	15287	913	32	4	2050	4	SRRM2	16	2812541	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	48548	2812541	87542212	1867	64856											
ZNF263	10127	broad.mit.edu	37	chr16	3340406	3340406	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagaaaaaccctatacctgtCatgagtgcggagacagcttc	10	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3340406	T	T	3340406	3	4	57	1	0	0	0	0	1	0	0	0	17929	826	29	4	1922	4	ZNF263	16	3340406	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	527865	3340406	87014347	1868	64857											
PPL	5493	broad.mit.edu	37	chr16	4933615	4933615	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcacgaacatgttccagtCaatgagcccggcacggtggg	12	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4933615	G	G	4933615	3	3	57	1	0	0	0	0	1	0	0	0	12435	826	29	4	233	4	PPL	16	4933615	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1593209	4933615	85421138	1869	64858											
PPL	5493	broad.mit.edu	37	chr16	4953797	4953797	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attagcccttgataacccctGactcgggctcccaaatgctg	8	14	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4953797	C	C	4953797	1	2	57	0	1	0	0	0	0	0	0	0	12435	1305	45	4		4	PPL	16	4953797	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	20182	4953797	85400956	1870	64859											
A2BP1	54715	broad.mit.edu	37	chr16	6189927	6189927	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcttagcaggtgtatctctGaagctcttcaaagatggtct	9	9	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6189927	T	T	6189927	1	4	57	0	1	0	0	0	0	0	0	0	3	1305	45	3		3	A2BP1	16	6189927	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1236130	6189927	84164826	1871	64860											
A2BP1	54715	broad.mit.edu	37	chr16	6507312	6507312	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggagtggccatagggtcCcttgccaatggaagccatgg	15	9	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6507312	G	G	6507312	1	3	57	0	1	0	0	0	0	0	0	0	3	638	22	4		4	A2BP1	16	6507312	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	317385	6507312	83847441	1872	64861											
A2BP1	54715	broad.mit.edu	37	chr16	7208738	7208738	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcatctgtttggtgtgtGttgtttctgggtggtgtgtg	16	4	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7208738	A	A	7208738	1	1	57	0	1	0	0	0	0	0	0	0	3	1392	48	4		4	A2BP1	16	7208738	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	701426	7208738	83146015	1873	64862											
A2BP1	54715	broad.mit.edu	37	chr16	7279781	7279781	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaggaagggagagagaggAaggaagggagagagagggag	25	0	0	4	rs141771330	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7279781	G	G	7279781	1	3	57	0	1	0	0	0	0	0	0	0	3	261	9	5		5	A2BP1	16	7279781	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	71043	7279781	83074972	1874	64863											
A2BP1	54715	broad.mit.edu	37	chr16	7383005	7383005	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataactctacgtaaagcatGctggcgtctcaaggagttct	9	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7383005	C	C	7383005	1	2	57	0	1	0	0	0	0	0	0	0	3	1319	46	4		4	A2BP1	16	7383005	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	103224	7383005	82971748	1875	64864											
A2BP1	54715	broad.mit.edu	37	chr16	7645464	7645464	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagccaggacaagaaataGaaattaaagcgagagaacat	10	5	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7645464	A	A	7645464	1	1	57	0	1	0	0	0	0	0	0	0	3	957	33	4		4	A2BP1	16	7645464	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	262459	7645464	82709289	1876	64865											
A2BP1	54715	broad.mit.edu	37	chr16	7726693	7726693	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagtagatttgggtaacagCtgctctggtgtggtcttgcc	13	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7726693	G	G	7726693	1	3	57	0	1	0	0	0	0	0	0	0	3	812	28	4		4	A2BP1	16	7726693	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	81229	7726693	82628060	1877	64866											
CIITA	4261	broad.mit.edu	37	chr16	10995697	10995697	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcctgctcagcatagctctCagagccaagtcacaaggaga	10	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10995697	G	G	10995697	1	3	57	0	1	0	0	0	0	0	0	0	3459	841	29	4		4	CIITA	16	10995697	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3269004	10995697	79359056	1878	64867											
PDXDC1	23042	broad.mit.edu	37	chr16	15130333	15130334	+	3'UTR	INS	-	AT	AT													tcatgtacatgtagaaccacINSgtttgctgtcctactacgac					rs149816223	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	15130334	AT	AT	15130333	6	5	57	0	1	1	1	0	0	0	0	0	11790	551	19	0		0	PDXDC1	16	15130333	3'UTR	INS	-	TCGA-17-Z026-01A-01W-0746-08	4134636	15130333	75224420	1879	64868											
MYH11	4629	broad.mit.edu	37	chr16	15835207	15835207	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaaccctctccaagccccCgtctcatcatctgtcccagc	4	21	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15835207	T	T	15835207	1	4	57	0	1	0	0	0	0	0	0	0	10125	667	23	4		4	MYH11	16	15835207	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	704874	15835207	74519546	1880	64869											
XYLT1	64131	broad.mit.edu	37	chr16	17292310	17292310	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgatgacagtcagtggcCtagaaaatacccaggcatgc	13	9	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17292310	G	G	17292310	1	3	57	0	1	0	0	0	0	0	0	0	17590	696	24	4		4	XYLT1	16	17292310	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1457103	17292310	73062443	1881	64870											
SMG1	23049	broad.mit.edu	37	chr16	18878006	18878006	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttccaacaatagatgatGaccagacagcaattccctgt	6	10	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18878006	A	A	18878006	3	1	57	1	0	0	0	0	1	0	0	0	14909	1294	45	4	7862	4	SMG1	16	18878006	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1585696	18878006	71476747	1882	64871											
ACSM2B	348158	broad.mit.edu	37	chr16	20559629	20559629	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggggctctctgtgtgcgaGagattcagatagataggcat	14	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20559629	C	C	20559629	1	2	57	0	1	0	0	0	0	0	0	0	184	957	33	4		4	ACSM2B	16	20559629	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1681623	20559629	69795124	1883	64872											
ERI2	112479	broad.mit.edu	37	chr16	20811535	20811535	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtacaaaagaaagtatcttCtttgcagaaacccatgccca	6	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20811535	T	T	20811535	1	4	57	0	1	0	0	0	0	0	0	0	5270	928	32	4		4	ERI2	16	20811535	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	251906	20811535	69543218	1884	64873											
DNAH3	55567	broad.mit.edu	37	chr16	21014609	21014609	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgaggattttaagtccctCagttatcagcatatgaaaat	7	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21014609	A	A	21014609	1	1	57	0	1	0	0	0	0	0	0	0	4643	841	29	3		3	DNAH3	16	21014609	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	203074	21014609	69340144	1885	64874											
DNAH3	55567	broad.mit.edu	37	chr16	21042461	21042461	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttgcgatcatcagagagtGaagacgcttgctcccggaaa	11	10	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21042461	T	T	21042461	4	4	57	1	0	0	0	0	0	1	0	0	4643	1294	45	3	7108	3	DNAH3	16	21042461	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	27852	21042461	69312292	1886	64875											
DNAH3	55567	broad.mit.edu	37	chr16	21063028	21063028	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtgtgatcaccagccGgggggagtttcccaggtact	17	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21063028	T	T	21063028	2	4	57	1	0	0	0	0	0	0	0	1	4643	1115	39	1		1	DNAH3	16	21063028	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	20567	21063028	69291725	1887	64876											
DNAH3	55567	broad.mit.edu	37	chr16	21093085	21093085	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagcaaatgtttgttgtccGaggcagtgctgtccagtaga	12	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21093085	A	A	21093085	1	1	57	0	1	0	0	0	0	0	0	0	4643	1073	37	4		4	DNAH3	16	21093085	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	30057	21093085	69261668	1888	64877											
OTOA	146183	broad.mit.edu	37	chr16	21771697	21771697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctctgcatcaagtggcCccagagagagactcggggag	15	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21771697	A	A	21771697	1	1	57	0	1	0	0	0	0	0	0	0	11396	638	22	2		2	OTOA	16	21771697	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	678612	21771697	68583056	1889	64878											
PDZD9	255762	broad.mit.edu	37	chr16	22000025	22000025	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttgatttgtagcactgttCcaatagtgatatgttgcaaa	8	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22000025	G	G	22000025	3	3	57	1	0	0	0	0	1	0	0	0	11800	855	30	4	503	4	PDZD9	16	22000025	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	228328	22000025	68354728	1890	64879											
VWA3A	146177	broad.mit.edu	37	chr16	22128198	22128198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgccccctgtgagtgccCgagattctctgaggtgcccc	12	14	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22128198	A	A	22128198	1	1	57	0	1	0	0	0	0	0	0	0	17367	667	23	1		1	VWA3A	16	22128198	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	128173	22128198	68226555	1891	64880											
COG7	91949	broad.mit.edu	37	chr16	23430062	23430062	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgaggaggttgctctcttCcatgtcgccatacttcagct	10	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23430062	T	T	23430062	3	4	57	1	0	0	0	0	1	0	0	0	3695	864	30	4	1256	4	COG7	16	23430062	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1301864	23430062	66924691	1892	64881											
PRKCB	5579	broad.mit.edu	37	chr16	23942896	23942896	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaacctgaggctgagtgggGaggagagaagcgagaggaca	18	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23942896	T	T	23942896	1	4	57	0	1	0	0	0	0	0	0	0	12614	1189	41	3		3	PRKCB	16	23942896	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	512834	23942896	66411857	1893	64882											
PRKCB	5579	broad.mit.edu	37	chr16	23966452	23966452	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgggaggttgaggcacgAcaatcacttgaatctgggag	14	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23966452	G	G	23966452	1	3	57	0	1	0	0	0	0	0	0	0	12614	290	10	5		5	PRKCB	16	23966452	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	23556	23966452	66388301	1894	64883											
PRKCB	5579	broad.mit.edu	37	chr16	24105638	24105638	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtaagtaagattttgccttGaaagctaccatacagcttgc	9	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24105638	T	T	24105638	1	4	57	0	1	0	0	0	0	0	0	0	12614	1305	45	3		3	PRKCB	16	24105638	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	139186	24105638	66249115	1895	64884											
PRKCB	5579	broad.mit.edu	37	chr16	24231531	24231531	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcacggtgcacatgctgGcattcaacatgtggaaagct	11	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24231531	T	T	24231531	1	4	57	0	1	0	0	0	0	0	0	0	12614	1218	42	3		3	PRKCB	16	24231531	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	125893	24231531	66123222	1896	64885											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25264188	25264188	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggtggttgcagtgagctGagattgcgccactgtactcc	14	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25264188	A	A	25264188	1	1	57	0	1	0	0	0	0	0	0	0	17813	1305	45	4		4	ZKSCAN2	16	25264188	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1032657	25264188	65090565	1897	64886											
IL21R	50615	broad.mit.edu	37	chr16	27460064	27460064	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgacagcccagaactcgggGggctcagcttacagtgagga	14	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27460064	T	T	27460064	2	4	57	1	0	0	0	0	0	0	0	1	7741	1219	43	2		2	IL21R	16	27460064	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2195876	27460064	62894689	1898	64887											
KIAA0556	23247	broad.mit.edu	37	chr16	27789114	27789114	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggccccagccggccccatGgcctccccaccagccctaag	10	21	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27789114	C	C	27789114	1	2	57	0	1	0	0	0	0	0	0	0	8253	1363	47	4		4	KIAA0556	16	27789114	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	329050	27789114	62565639	1899	64888											
IL27	246778	broad.mit.edu	37	chr16	28513453	28513453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagcagagacgctccggGtcctgaaggggagggagatg	18	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28513453	T	T	28513453	3	4	57	1	0	0	0	0	1	0	0	0	7750	1252	44	3	433	3	IL27	16	28513453	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	724339	28513453	61841300	1900	64889											
ATXN2L	11273	broad.mit.edu	37	chr16	28841176	28841176	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggtctgtgggtgctgtctCagggtgcccttagaaaagga	16	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28841176	T	T	28841176	1	4	57	0	1	0	0	0	0	0	0	0	1216	841	29	4		4	ATXN2L	16	28841176	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	327723	28841176	61513577	1901	64890											
ATXN2L	11273	broad.mit.edu	37	chr16	28845423	28845423	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaacttctccggggccccGgactcattcaactccctcca	6	20	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28845423	C	C	28845423	3	2	57	1	0	0	0	0	1	0	0	0	1216	1116	39	4	2125	4	ATXN2L	16	28845423	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4247	28845423	61509330	1902	64891											
SPNS1	83985	broad.mit.edu	37	chr16	28986805	28986805	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccggaccatcctgaattttCtcctcaggcgtccttcccga	8	16	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28986805	G	G	28986805	1	3	57	0	1	0	0	0	0	0	0	0	15192	928	32	4		4	SPNS1	16	28986805	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	141382	28986805	61367948	1903	64892											
TAOK2	9344	broad.mit.edu	37	chr16	29992976	29992976	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcttccctttcacctttttCtgtagctgaacggaaaccac	5	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29992976	T	T	29992976	1	4	57	0	1	0	0	0	0	0	0	0	15667	928	32	4		4	TAOK2	16	29992976	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1006171	29992976	60361777	1904	64893											
TAOK2	9344	broad.mit.edu	37	chr16	29994048	29994048	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagacctcagtgccctcttCccccagcaccgctttgtgct	8	18	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29994048	A	A	29994048	1	1	57	0	1	0	0	0	0	0	0	0	15667	870	30	3		3	TAOK2	16	29994048	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1072	29994048	60360705	1905	64894											
TAOK2	9344	broad.mit.edu	37	chr16	29994517	29994517	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacagcctagcagatgcctCagacaacgaggaagaggagg	13	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29994517	G	G	29994517	4	3	57	1	0	0	0	0	0	1	0	0	15667	838	29	4	1166	4	TAOK2	16	29994517	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	469	29994517	60360236	1906	64895											
SEPT1	1731	broad.mit.edu	37	chr16	30393197	30393197	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaatggccagggtctgtgtCaagcgagctgtgggatgggg	18	7	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30393197	T	T	30393197	2	4	57	1	0	0	0	0	0	0	0	1	14172	825	29	4		4	SEPT1	16	30393197	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	398680	30393197	59961556	1907	64896											
SRCAP	10847	broad.mit.edu	37	chr16	30721880	30721880	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactttcacagttccttcCccaggcagtggggccaggat	12	13	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30721880	T	T	30721880	1	4	57	0	1	0	0	0	0	0	0	0	15253	638	22	4		4	SRCAP	16	30721880	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	328683	30721880	59632873	1908	64897											
ITGAM	3684	broad.mit.edu	37	chr16	31336130	31336130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagttggggtcctgcagGggtgtggaagagaccagaga	18	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31336130	T	T	31336130	1	4	57	0	1	0	0	0	0	0	0	0	7957	1247	43	2		2	ITGAM	16	31336130	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	614250	31336130	59018623	1909	64898											
ITGAD	3681	broad.mit.edu	37	chr16	31424105	31424105	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattccccttgttacttattTccaacttcttcccccatctt	1	15	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31424105	C	C	31424105	1	2	57	0	1	0	0	0	0	0	0	0	7954	1798	62	5		5	ITGAD	16	31424105	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	87975	31424105	58930648	1910	64899											
SLC5A2	6524	broad.mit.edu	37	chr16	31498804	31498804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggccgttgcgcgtctcCggtctgagggtcctaaggag	18	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31498804	A	A	31498804	1	1	57	0	1	0	0	0	0	0	0	0	14779	667	23	1		1	SLC5A2	16	31498804	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	74699	31498804	58855949	1911	64900											
MYLK3	91807	broad.mit.edu	37	chr16	46763549	46763549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgatcttggcagccagtGggaggcctgtggacttctct	14	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46763549	T	T	46763549	3	4	57	1	0	0	0	0	1	0	0	0	10152	1348	47	2	872	2	MYLK3	16	46763549	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	15264745	46763549	43591204	1912	64901											
ABCC12	94160	broad.mit.edu	37	chr16	48142414	48142414	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttccttcctggggggattCagtctggatgagctggtgct	16	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48142414	G	G	48142414	3	3	57	1	0	0	0	0	1	0	0	0	52	835	29	4	1823	4	ABCC12	16	48142414	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1378865	48142414	42212339	1913	64902											
ABCC11	85320	broad.mit.edu	37	chr16	48234168	48234168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccgtcaatcacagtcagaGccctggaagggtgctaacct	10	12	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48234168	T	T	48234168	1	4	57	0	1	0	0	0	0	0	0	0	51	986	34	3		3	ABCC11	16	48234168	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	91754	48234168	42120585	1914	64903											
N4BP1	9683	broad.mit.edu	37	chr16	48585259	48585259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggctggctcctcaccacCccactccaaccttaggaagg	10	16	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48585259	A	A	48585259	1	1	57	0	1	0	0	0	0	0	0	0	10203	638	22	2		2	N4BP1	16	48585259	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	351091	48585259	41769494	1915	64904											
ADCY7	113	broad.mit.edu	37	chr16	50324570	50324570	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcctgtgcgtgggagcAggtaacaggaactctggact	17	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50324570	T	T	50324570	3	4	57	1	0	0	0	0	1	0	0	0	299	202	7	5	380	5	ADCY7	16	50324570	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1739311	50324570	40030183	1916	64905											
CYLD	1540	broad.mit.edu	37	chr16	50787291	50787291	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcatcaggctctttacCttgggcctcaaacttggcag	9	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50787291	T	T	50787291	1	4	57	0	1	0	0	0	0	0	0	0	4176	696	24	4		4	CYLD	16	50787291	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	462721	50787291	39567462	1917	64906											
CYLD	1540	broad.mit.edu	37	chr16	50810274	50810274	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagattataagctattacttCtgaacatgtatgtagacttt	6	5	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50810274	T	T	50810274	1	4	57	0	1	0	0	0	0	0	0	0	4176	928	32	4		4	CYLD	16	50810274	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	22983	50810274	39544479	1918	64907											
SALL1	6299	broad.mit.edu	37	chr16	51173419	51173419	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctttccatgtcaccacccActgaggatgaatcattggtc	9	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51173419	T	T	51173419	3	4	57	1	0	0	0	0	1	0	0	0	13921	159	6	5	1268	5	SALL1	16	51173419	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	363145	51173419	39181334	1919	64908											
CHD9	80205	broad.mit.edu	37	chr16	53289614	53289614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctaaattctgcgaagagGatatcgatcagattttacta	8	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53289614	T	T	53289614	3	4	57	1	0	0	0	0	1	0	0	0	3363	1174	41	3	4202	3	CHD9	16	53289614	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2116195	53289614	37065139	1920	64909											
SLC6A2	6530	broad.mit.edu	37	chr16	55690840	55690840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcagtggacctggccaaCgtgtggcgcttcccctacct	11	15	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55690840	A	A	55690840	3	1	57	1	0	0	0	0	1	0	0	0	14797	535	19	3	236	3	SLC6A2	16	55690840	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2401226	55690840	34663913	1921	64910											
CES7	221223	broad.mit.edu	37	chr16	55883831	55883831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccttcctcatttgaggCtggaatttcctgctacagca	7	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55883831	A	A	55883831	1	1	57	0	1	0	0	0	0	0	0	0	3302	812	28	3		3	CES7	16	55883831	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	192991	55883831	34470922	1922	64911											
MT1B	4490	broad.mit.edu	37	chr16	56686794	56686794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatgcatcctctgggtGtgggggctgaacttcagcca	12	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56686794	T	T	56686794	1	4	57	0	1	0	0	0	0	0	0	0	9992	1392	48	3		3	MT1B	16	56686794	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	802963	56686794	33667959	1923	64912											
RSPRY1	89970	broad.mit.edu	37	chr16	57272859	57272859	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgtaaagaaatagtatctaGaatcagacagatttctcata	6	6	3	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57272859	C	C	57272859	3	2	57	1	0	0	0	0	1	0	0	0	13824	942	33	4	1757	4	RSPRY1	16	57272859	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	586065	57272859	33081894	1924	64913											
CCDC135	84229	broad.mit.edu	37	chr16	57732064	57732064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtctcagcggagctccCgtgagtgtggcagggtgggg	18	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57732064	A	A	57732064	3	1	57	1	0	0	0	0	1	0	0	0	2795	666	23	1	205	1	CCDC135	16	57732064	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	459205	57732064	32622689	1925	64914											
CCDC135	84229	broad.mit.edu	37	chr16	57752494	57752494	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgggggatggcccaagtaGaccagtgatgggttcctcaa	15	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57752494	C	C	57752494	1	2	57	0	1	0	0	0	0	0	0	0	2795	957	33	4		4	CCDC135	16	57752494	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	20430	57752494	32602259	1926	64915											
CNGB1	1258	broad.mit.edu	37	chr16	57949204	57949204	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcacaccgactttcaaataGagaaaatccaagggcaggag	9	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57949204	C	C	57949204	2	2	57	1	0	0	0	0	0	0	0	1	3632	929	33	4		4	CNGB1	16	57949204	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	196710	57949204	32405549	1927	64916											
CNGB1	1258	broad.mit.edu	37	chr16	57950086	57950086	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgtcctttttgtccgtctGaaagaaagggaatgatgatg	11	6	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57950086	C	C	57950086	1	2	57	0	1	0	0	0	0	0	0	0	3632	1305	45	4		4	CNGB1	16	57950086	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	882	57950086	32404667	1928	64917											
CNGB1	1258	broad.mit.edu	37	chr16	57996431	57996431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgttcctcccacccacaCatacagacaacagtgacact	4	17	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57996431	A	A	57996431	1	1	57	0	1	0	0	0	0	0	0	0	3632	493	17	3		3	CNGB1	16	57996431	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	46345	57996431	32358322	1929	64918											
CSNK2A2	1459	broad.mit.edu	37	chr16	58208454	58208454	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagaaagttaatttagtctCactgcatcttgtcatcctaa	5	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58208454	A	A	58208454	1	1	57	0	1	0	0	0	0	0	0	0	3992	841	29	3		3	CSNK2A2	16	58208454	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	212023	58208454	32146299	1930	64919											
CNOT1	23019	broad.mit.edu	37	chr16	58592370	58592370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgctctcatttgcctccCccttacctggaagctgtgat	7	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58592370	A	A	58592370	1	1	57	0	1	0	0	0	0	0	0	0	3649	638	22	2		2	CNOT1	16	58592370	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	383916	58592370	31762383	1931	64920											
CNOT1	23019	broad.mit.edu	37	chr16	58608603	58608603	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtctttttctggggcaagtCcgcccaaaatagaaggacac	11	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58608603	G	G	58608603	3	3	57	1	0	0	0	0	1	0	0	0	3649	855	30	4	5599	4	CNOT1	16	58608603	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	16233	58608603	31746150	1932	64921											
CDH8	1006	broad.mit.edu	37	chr16	61687880	61687880	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttgcaatgtcaaaagcctCtgtgtcctcctcccctcctc	6	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61687880	T	T	61687880	3	4	57	1	0	0	0	0	1	0	0	0	3146	922	32	4	371	4	CDH8	16	61687880	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3079277	61687880	28666873	1933	64922											
CDH8	1006	broad.mit.edu	37	chr16	61689354	61689354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaagggtgaccggtagGctatgaaggaaatacgtacc	13	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61689354	T	T	61689354	1	4	57	0	1	0	0	0	0	0	0	0	3146	1218	42	3		3	CDH8	16	61689354	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1474	61689354	28665399	1934	64923											
CDH8	1006	broad.mit.edu	37	chr16	61760857	61760857	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggagaaaaaaaattccctCtctgttcccatttggatgtg	8	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61760857	A	A	61760857	1	1	57	0	1	0	0	0	0	0	0	0	3146	928	32	3		3	CDH8	16	61760857	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	71503	61760857	28593896	1935	64924											
CDH11	1009	broad.mit.edu	37	chr16	64981336	64981336	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagaaaaggtatttcacaGtatttaccactttgatgtcc	8	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64981336	T	T	64981336	1	4	57	0	1	0	0	0	0	0	0	0	3127	1044	36	3		3	CDH11	16	64981336	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3220479	64981336	25373417	1936	64925											
CDH11	1009	broad.mit.edu	37	chr16	64981776	64981776	+	Frame_Shift_Del	DEL	C	-	-													ctgttgggcgctggccggagCccaggtctaggcatgtactg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64981776	-	-	64981776	7	5	57	1	0	1	0	1	0	0	0	0	3127	726	26	0	273	0	CDH11	16	64981776	Frame_Shift_Del	DEL	C	TCGA-17-Z026-01A-01W-0746-08	440	64981776	25372977	1937	64926											
CDH11	1009	broad.mit.edu	37	chr16	65023551	65023551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtggaggccaaattgcGtaaaatagaccattgtgggg	15	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65023551	T	T	65023551	1	4	57	0	1	0	0	0	0	0	0	0	3127	1160	40	3		3	CDH11	16	65023551	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	41775	65023551	25331202	1938	64927											
CES3	23491	broad.mit.edu	37	chr16	66995153	66995153	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttagagatcggtggtgctGaagggcagggatcttattcc	14	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66995153	A	A	66995153	1	1	57	0	1	0	0	0	0	0	0	0	3301	1305	45	4		4	CES3	16	66995153	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1971602	66995153	23359600	1939	64928											
C16orf70	80262	broad.mit.edu	37	chr16	67178084	67178084	+	Intron	DEL	G	-	-													gaagaaaggtgatgcctgcaGgcattcttgctgtggagtgc					rs10717954		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67178084	-	-	67178084	6	5	57	0	1	1	0	1	0	0	0	0	1843	1015	35	0		0	C16orf70	16	67178084	Intron	DEL	G	TCGA-17-Z026-01A-01W-0746-08	182931	67178084	23176669	1940	64929											
FHOD1	29109	broad.mit.edu	37	chr16	67272057	67272057	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaacagggatgggcagagtCagcgagggtcgctggagcag	19	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67272057	T	T	67272057	1	4	57	0	1	0	0	0	0	0	0	0	5939	841	29	4		4	FHOD1	16	67272057	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	93973	67272057	23082696	1941	64930											
KCTD19	146212	broad.mit.edu	37	chr16	67328199	67328199	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaatcccatccctgacAggggtcacccatttgagctt	8	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67328199	T	T	67328199	1	4	57	0	1	0	0	0	0	0	0	0	8176	203	7	5		5	KCTD19	16	67328199	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	56142	67328199	23026554	1942	64931											
HSD11B2	3291	broad.mit.edu	37	chr16	67469789	67469789	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggcgtggcaggggagtggGaaggacacggggactggaag	23	5	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67469789	A	A	67469789	1	1	57	0	1	0	0	0	0	0	0	0	7444	1189	41	4		4	HSD11B2	16	67469789	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	141590	67469789	22884964	1943	64932											
RANBP10	57610	broad.mit.edu	37	chr16	67763741	67763741	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actgccggcacctgtggaggGagcggagcaataatgctctg	15	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67763741	C	C	67763741	1	2	57	0	1	0	0	0	0	0	0	0	13134	1189	41	4		4	RANBP10	16	67763741	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	293952	67763741	22591012	1944	64933											
DPEP3	64180	broad.mit.edu	37	chr16	68009885	68009885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctccacggggctctgcGccctgctctcctctctcacc	8	21	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68009885	T	T	68009885	3	4	57	1	0	0	0	0	1	0	0	0	4755	1087	38	3	220	3	DPEP3	16	68009885	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	246144	68009885	22344868	1945	64934											
ZNF23	7571	broad.mit.edu	37	chr16	71482163	71482163	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgccacattccacacatcTgaagggtttctccccagtgt	7	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71482163	A	A	71482163	4	1	57	1	0	0	0	0	0	1	0	0	17909	1588	55	5	170	5	ZNF23	16	71482163	Nonsense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3472278	71482163	18872590	1946	64935											
ZNF23	7571	broad.mit.edu	37	chr16	71482621	71482621	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaattctcagatgctgcCgaaattgggagttacatctg	11	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71482621	T	T	71482621	3	4	57	1	0	0	0	0	1	0	0	0	17909	652	23	4	628	4	ZNF23	16	71482621	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	458	71482621	18872132	1947	64936											
ZFHX3	463	broad.mit.edu	37	chr16	72831467	72831467	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattggcctctttgggctctGaaggggaagcaatgttggca	15	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72831467	A	A	72831467	3	1	57	1	0	0	0	0	1	0	0	0	17760	1294	45	4	6005	4	ZFHX3	16	72831467	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1348846	72831467	17523286	1948	64937											
ZFHX3	463	broad.mit.edu	37	chr16	72863674	72863674	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacttgccctggtctttcTcacctccgccctcttggtcc	6	19	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72863674	C	C	72863674	1	2	57	0	1	0	0	0	0	0	0	0	17760	1566	54	5		5	ZFHX3	16	72863674	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	32207	72863674	17491079	1949	64938											
GLG1	2734	broad.mit.edu	37	chr16	74537461	74537461	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgaatactgccacatttcaGaatgttgatgtcatttttgc	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74537461	A	A	74537461	2	1	57	1	0	0	0	0	0	0	0	1	6500	933	33	4		4	GLG1	16	74537461	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1673787	74537461	15817292	1950	64939											
WDR59	79726	broad.mit.edu	37	chr16	74999731	74999731	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgcagttgcctgagagagaGaacacagagtcagtgctgcc	13	10	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74999731	A	A	74999731	1	1	57	0	1	0	0	0	0	0	0	0	17435	957	33	4		4	WDR59	16	74999731	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	462270	74999731	15355022	1951	64940											
TERF2IP	54386	broad.mit.edu	37	chr16	75688085	75688085	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaaaaagtgcaggctcactCctggcccagagctcacacag	9	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75688085	G	G	75688085	1	3	57	0	1	0	0	0	0	0	0	0	15885	870	30	4		4	TERF2IP	16	75688085	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	688354	75688085	14666668	1952	64941											
PKD1L2	114780	broad.mit.edu	37	chr16	81145701	81145701	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaccctaactgtccactttCccaccaccaattagccttgg	4	16	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81145701	T	T	81145701	1	4	57	0	1	0	0	0	0	0	0	0	12060	870	30	4		4	PKD1L2	16	81145701	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5457616	81145701	9209052	1953	64942											
PKD1L2	114780	broad.mit.edu	37	chr16	81228586	81228586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcccgatttccaaactcaGgttggagaaggcattcctca	9	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81228586	T	T	81228586	3	4	57	1	0	0	0	0	1	0	0	0	12060	991	35	2	6004	2	PKD1L2	16	81228586	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	82885	81228586	9126167	1954	64943											
HSD17B2	3294	broad.mit.edu	37	chr16	82131727	82131727	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaagctggagaaggacattCtggaccacctccccgctgag	11	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82131727	G	G	82131727	3	3	57	1	0	0	0	0	1	0	0	0	7451	912	32	4	868	4	HSD17B2	16	82131727	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	903141	82131727	8223026	1955	64944											
ATP2C2	9914	broad.mit.edu	37	chr16	84486906	84486906	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgaaatctgattcttcgtCttccccgtctccgtgtccag	7	13	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84486906	T	T	84486906	1	4	57	0	1	0	0	0	0	0	0	0	1148	928	32	4		4	ATP2C2	16	84486906	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2355179	84486906	5867847	1956	64945											
CRISPLD2	83716	broad.mit.edu	37	chr16	84888144	84888144	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagaatcgctgggattctgGagctctctagactctctgtg	12	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84888144	T	T	84888144	1	4	57	0	1	0	0	0	0	0	0	0	3915	1189	41	3		3	CRISPLD2	16	84888144	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	401238	84888144	5466609	1957	64946											
CRISPLD2	83716	broad.mit.edu	37	chr16	84902407	84902407	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcatggggaagggtcttctCaccctcctggtttcgtgccg	13	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84902407	T	T	84902407	1	4	57	0	1	0	0	0	0	0	0	0	3915	841	29	4		4	CRISPLD2	16	84902407	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	14263	84902407	5452346	1958	64947											
CRISPLD2	83716	broad.mit.edu	37	chr16	84923004	84923004	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaacccttgacacccaatCccggctgctaatggtccctc	6	18	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84923004	A	A	84923004	1	1	57	0	1	0	0	0	0	0	0	0	3915	870	30	3		3	CRISPLD2	16	84923004	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	20597	84923004	5431749	1959	64948											
KLHDC4	54758	broad.mit.edu	37	chr16	87782151	87782151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggacccagcgaggctGggctccaggactgtgaccca	13	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87782151	T	T	87782151	1	4	57	0	1	0	0	0	0	0	0	0	8429	1363	47	2		2	KLHDC4	16	87782151	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2859147	87782151	2572602	1960	64949											
FANCA	2175	broad.mit.edu	37	chr16	89877051	89877051	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acccaggtactctgttgcctCcatccagatcaacagaacat	6	14	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89877051	G	G	89877051	1	3	57	0	1	0	0	0	0	0	0	0	5719	870	30	4		4	FANCA	16	89877051	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2094900	89877051	477702	1961	64950											
YWHAE	7531	broad.mit.edu	37	chr17	1268401	1268401	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaaatttgaagttttcttAacatattcctttcaaagtag	4	6	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1268401	G	G	1268401	1	3	57	0	1	0	0	0	0	0	0	0	17629	377	13	5		5	YWHAE	17	1268401	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08		1268401	79926809	1962	64951											
OR3A3	8392	broad.mit.edu	37	chr17	3323849	3323849	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactgagtgaactgatacctCccctgctgggacatgtcctt	9	12	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3323849	A	A	3323849	1	1	57	0	1	0	0	0	0	0	0	0	11133	870	30	3		3	OR3A3	17	3323849	5'Flank	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2055448	3323849	77871361	1963	64952											
ANKFY1	51479	broad.mit.edu	37	chr17	4085565	4085565	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacagacatgtcagctcCtcgggtgcatatggcatcaa	11	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4085565	A	A	4085565	4	1	57	1	0	0	0	0	0	1	0	0	626	690	24	2	1521	2	ANKFY1	17	4085565	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	761716	4085565	77109645	1964	64953											
SPNS3	201305	broad.mit.edu	37	chr17	4349546	4349546	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtaaactgaggcccaaaGgagtcagaacaggggctgga	16	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4349546	A	A	4349546	1	1	57	0	1	0	0	0	0	0	0	0	15194	1015	35	4		4	SPNS3	17	4349546	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	263981	4349546	76845664	1965	64954											
INCA1	388324	broad.mit.edu	37	chr17	4892928	4892928	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accagtggctctctgtgccaGagaatggggaaaaagagcta	13	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4892928	T	T	4892928	1	4	57	0	1	0	0	0	0	0	0	0	7802	957	33	3		3	INCA1	17	4892928	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	543382	4892928	76302282	1966	64955											
USP6	9098	broad.mit.edu	37	chr17	5042598	5042598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcctgtgccggcttcacGtggtgggaagaccctctgca	14	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5042598	T	T	5042598	3	4	57	1	0	0	0	0	1	0	0	0	17213	1145	40	3	1177	3	USP6	17	5042598	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	149670	5042598	76152612	1967	64956											
RABEP1	9135	broad.mit.edu	37	chr17	5271832	5271832	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttgttctatcttgacatCatctttgataggaatttatc	5	6	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5271832	T	T	5271832	1	4	57	0	1	0	0	0	0	0	0	0	13069	841	29	4		4	RABEP1	17	5271832	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	229234	5271832	75923378	1968	64957											
CLDN7	1366	broad.mit.edu	37	chr17	7163586	7163586	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagggacagagtgaccaGgaggcctttgtccggcaccc	15	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7163586	C	C	7163586	1	2	57	0	1	0	0	0	0	0	0	0	3522	1015	35	4		4	CLDN7	17	7163586	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1891754	7163586	74031624	1969	64958											
CHRNB1	1140	broad.mit.edu	37	chr17	7349314	7349314	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggcggcgttcccaggagaGaggttggccccccgagcccc	17	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7349314	C	C	7349314	1	2	57	0	1	0	0	0	0	0	0	0	3421	957	33	4		4	CHRNB1	17	7349314	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	185728	7349314	73845896	1970	64959											
SHBG	6462	broad.mit.edu	37	chr17	7534966	7534966	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggctggacaaacaggccgaGatctcagcatctgcccccac	10	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7534966	C	C	7534966	3	2	57	1	0	0	0	0	1	0	0	0	14382	933	33	4	633	4	SHBG	17	7534966	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	185652	7534966	73660244	1971	64960											
TP53	7157	broad.mit.edu	37	chr17	7577142	7577143	+	Nonsense_Mutation	DNP	CC	AT	AT													cacctcaaagctgttccgtcCcagtagattaccactactca							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	7577143	AT	AT	7577142	4	1	57	1	0	0	0	0	0	1	0	0	16505	632	22	2	490	2	TP53	17	7577142	Nonsense_Mutation	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	42176	7577142	73618068	1972	64961											
DNAH2	146754	broad.mit.edu	37	chr17	7720704	7720704	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctgaccaactaccgggatGagattgtcaaccaaatctgg	9	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7720704	A	A	7720704	3	1	57	1	0	0	0	0	1	0	0	0	4642	1291	45	4	10245	4	DNAH2	17	7720704	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	143562	7720704	73474506	1973	64962											
KCNAB3	9196	broad.mit.edu	37	chr17	7830955	7830955	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacccccaccaccctgattCtaggtccgataacttatacc	4	17	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7830955	G	G	7830955	1	3	57	0	1	0	0	0	0	0	0	0	8081	928	32	4		4	KCNAB3	17	7830955	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	110251	7830955	73364255	1974	64963											
PER1	5187	broad.mit.edu	37	chr17	8048330	8048330	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgaggagagtgagatagGgaaaggtcatcagaaccact	14	6	3	4	rs55690932		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8048330	A	A	8048330	1	1	57	0	1	0	0	0	0	0	0	0	11823	1247	43	4		4	PER1	17	8048330	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	217375	8048330	73146880	1975	64964											
C17orf68	80169	broad.mit.edu	37	chr17	8140619	8140619	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctacatggctcctcctAtgatgctatctttcctactg	5	13	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8140619	T	T	8140619	1	4	57	0	1	0	0	0	0	0	0	0	1892	464	16	5		5	C17orf68	17	8140619	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	92289	8140619	73054591	1976	64965											
C17orf68	80169	broad.mit.edu	37	chr17	8146359	8146359	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctgggacaaccagacagtCttcacacaatcaattaccaa	5	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8146359	T	T	8146359	2	4	57	1	0	0	0	0	0	0	0	1	1892	912	32	4		4	C17orf68	17	8146359	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5740	8146359	73048851	1977	64966											
PIK3R5	23533	broad.mit.edu	37	chr17	8784871	8784871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacatacatgtgcacacaCacgtacacacatacgcacat	4	15	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8784871	T	T	8784871	1	4	57	0	1	0	0	0	0	0	0	0	12017	493	17	4		4	PIK3R5	17	8784871	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	638512	8784871	72410339	1978	64967											
GLP2R	9340	broad.mit.edu	37	chr17	9765240	9765240	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attggtgggaagtagggcttGagtgcaagcatccttcttcc	13	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9765240	C	C	9765240	1	2	57	0	1	0	0	0	0	0	0	0	6517	1305	45	4		4	GLP2R	17	9765240	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	980369	9765240	71429970	1979	64968											
GAS7	8522	broad.mit.edu	37	chr17	9830037	9830037	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcacttcttcatgtctttcTtgaagttctcacggaagttc	7	11	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9830037	A	A	9830037	3	1	57	1	0	0	0	0	1	0	0	0	6312	1609	56	5	515	5	GAS7	17	9830037	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	64797	9830037	71365173	1980	64969											
MYH13	8735	broad.mit.edu	37	chr17	10224829	10224829	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgataaatgctaaagcaTagtagtaaaatatcctcaca	6	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10224829	G	G	10224829	1	3	57	0	1	0	0	0	0	0	0	0	10126	1421	49	5		5	MYH13	17	10224829	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	394792	10224829	70970381	1981	64970											
MYH8	4626	broad.mit.edu	37	chr17	10322308	10322308	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattttgtcatatttcggagGgttcatagggaagacttggt	12	4	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10322308	A	A	10322308	3	1	57	1	0	0	0	0	1	0	0	0	10135	1232	43	4	5711	4	MYH8	17	10322308	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	97479	10322308	70872902	1982	64971											
MYH4	4622	broad.mit.edu	37	chr17	10360771	10360771	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccccagagaagaggaaAgccagagtcttcattgcaga	12	9	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10360771	T	T	10360771	2	4	57	1	0	0	0	0	0	0	0	1	10131	59	3	5		5	MYH4	17	10360771	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	38463	10360771	70834439	1983	64972											
MYH4	4622	broad.mit.edu	37	chr17	10366672	10366672	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacatgtttcaatatctgcaGaagccagtttgcctgtggca	9	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10366672	A	A	10366672	3	1	57	1	0	0	0	0	1	0	0	0	10131	942	33	4	5159	4	MYH4	17	10366672	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5901	10366672	70828538	1984	64973											
MYH4	4622	broad.mit.edu	37	chr17	10367998	10367998	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtaacgaaatctacatacGtaatcaagattgactggttt	7	6	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10367998	A	A	10367998	3	1	57	1	0	0	0	0	1	0	0	0	10131	1159	40	4	5426	4	MYH4	17	10367998	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1326	10367998	70827212	1985	64974											
MYH2	4620	broad.mit.edu	37	chr17	10436512	10436512	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttattcatttcttctttAgtgtccttatcataagctga	4	9	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10436512	C	C	10436512	1	2	57	0	1	0	0	0	0	0	0	0	10129	435	15	5		5	MYH2	17	10436512	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	68514	10436512	70758698	1986	64975											
MYH2	4620	broad.mit.edu	37	chr17	10440957	10440957	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatatagttgccgcaaaatAtggtttcagaaatgcaaaac	7	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10440957	T	T	10440957	1	4	57	0	1	0	0	0	0	0	0	0	10129	464	16	5		5	MYH2	17	10440957	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	4445	10440957	70754253	1987	64976											
MYH2	4620	broad.mit.edu	37	chr17	10443489	10443489	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaactaccagtgctaatggGagacaaggaaccccttagat	10	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10443489	T	T	10443489	1	4	57	0	1	0	0	0	0	0	0	0	10129	1189	41	3		3	MYH2	17	10443489	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2532	10443489	70751721	1988	64977											
DNAH9	1770	broad.mit.edu	37	chr17	11573178	11573178	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaccatgtttttaaacctTttttatattttttccccatg	2	9	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11573178	G	G	11573178	1	3	57	0	1	0	0	0	0	0	0	0	4648	1856	64	5		5	DNAH9	17	11573178	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1129689	11573178	69622032	1989	64978											
RICH2	9912	broad.mit.edu	37	chr17	12800611	12800611	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgcagttattgctgatttCtgcatccccttggtcccccg	8	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12800611	G	G	12800611	1	3	57	0	1	0	0	0	0	0	0	0	13466	928	32	4		4	RICH2	17	12800611	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1227433	12800611	68394599	1990	64979											
ATPAF2	91647	broad.mit.edu	37	chr17	17931576	17931576	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagtacttgatggtatcCtgctgggaatcccactcagt	11	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17931576	T	T	17931576	2	4	57	1	0	0	0	0	0	0	0	1	1205	680	24	4		4	ATPAF2	17	17931576	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5130965	17931576	63263634	1991	64980											
SHMT1	6470	broad.mit.edu	37	chr17	18233860	18233860	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaaggagaaggcaaggatGattctcacctggacaggtgt	15	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18233860	A	A	18233860	1	1	57	0	1	0	0	0	0	0	0	0	14398	1305	45	4		4	SHMT1	17	18233860	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	302284	18233860	62961350	1992	64981											
FAM83G	644815	broad.mit.edu	37	chr17	18881221	18881221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcactgagggttacgtaGtcgtcatcatcttcttcttc	9	10	6	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18881221	T	T	18881221	3	4	57	1	0	0	0	0	1	0	0	0	5692	1020	36	3	721	3	FAM83G	17	18881221	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	647361	18881221	62313989	1993	64982											
CYTSB	92521	broad.mit.edu	37	chr17	20016141	20016141	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaaaaatgcaaagttgaaGaactgtaacctcagaggagc	9	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20016141	C	C	20016141	1	2	57	0	1	0	0	0	0	0	0	0	4243	957	33	4		4	CYTSB	17	20016141	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1134920	20016141	61179069	1994	64983											
WSB1	26118	broad.mit.edu	37	chr17	25621391	25621391	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgttgttgggtccgcatCgtattcccggaatcagacgg	12	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25621391	T	T	25621391	1	4	57	0	1	0	0	0	0	0	0	0	17531	899	31	4		4	WSB1	17	25621391	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5605250	25621391	55573819	1995	64984											
NOS2	4843	broad.mit.edu	37	chr17	26115996	26115996	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggttttctctcaggtctctCctagaccccaggccctgcct	9	16	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26115996	A	A	26115996	1	1	57	0	1	0	0	0	0	0	0	0	10638	870	30	3		3	NOS2	17	26115996	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	494605	26115996	55079214	1996	64985											
PHF12	57649	broad.mit.edu	37	chr17	27240793	27240793	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggggttaggatgagggtGggtggggactggaatgagaa	22	1	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27240793	A	A	27240793	1	1	57	0	1	0	0	0	0	0	0	0	11918	1363	47	4		4	PHF12	17	27240793	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1124797	27240793	53954417	1997	64986											
MYO18A	399687	broad.mit.edu	37	chr17	27414224	27414224	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggcagagctctgggtgagGaggcctggggtcgagctctg	20	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27414224	A	A	27414224	1	1	57	0	1	0	0	0	0	0	0	0	10159	1189	41	4		4	MYO18A	17	27414224	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	173431	27414224	53780986	1998	64987											
SSH2	85464	broad.mit.edu	37	chr17	28011471	28011471	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccactgcactctagtctgGgcaacagagtgatgacactc	10	12	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28011471	A	A	28011471	1	1	57	0	1	0	0	0	0	0	0	0	15303	1247	43	4		4	SSH2	17	28011471	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	597247	28011471	53183739	1999	64988											
SLC6A4	6532	broad.mit.edu	37	chr17	28545949	28545949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggggaggaggaatgccCctgaggcagatgaaagacaa	16	6	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28545949	A	A	28545949	3	1	57	1	0	0	0	0	1	0	0	0	14800	637	22	2	1596	2	SLC6A4	17	28545949	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	534478	28545949	52649261	2000	64989											
TMIGD1	388364	broad.mit.edu	37	chr17	28643836	28643836	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacccacttcacatatgctaGaagcgctaaacaaagctgca	6	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28643836	C	C	28643836	1	2	57	0	1	0	0	0	0	0	0	0	16353	957	33	4		4	TMIGD1	17	28643836	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	97887	28643836	52551374	2001	64990											
TBC1D29	26083	broad.mit.edu	37	chr17	28887555	28887555	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccctcatggggaaggtcaGtgaagccccaatgggctagc	14	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28887555	C	C	28887555	1	2	57	0	1	0	0	0	0	0	0	0	15737	1044	36	4		4	TBC1D29	17	28887555	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	243719	28887555	52307655	2002	64991											
UTP6	55813	broad.mit.edu	37	chr17	30205384	30205384	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcagttcattacaaagatCccagcaggggcctctggcct	9	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30205384	T	T	30205384	1	4	57	0	1	0	0	0	0	0	0	0	17229	870	30	4		4	UTP6	17	30205384	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1317829	30205384	50989826	2003	64992											
RHOT1	55288	broad.mit.edu	37	chr17	30538050	30538050	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgttgcttatgcctaagtCttttttttttaagttggcac	8	6	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30538050	G	G	30538050	1	3	57	0	1	0	0	0	0	0	0	0	13452	928	32	4		4	RHOT1	17	30538050	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	332666	30538050	50657160	2004	64993											
ACCN1	40	broad.mit.edu	37	chr17	32483252	32483252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcattggtggtgagcctGgagaaccggaagccattcag	15	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32483252	T	T	32483252	2	4	57	1	0	0	0	0	0	0	0	1	128	1335	47	2		2	ACCN1	17	32483252	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1945202	32483252	48711958	2005	64994											
ZNF830	91603	broad.mit.edu	37	chr17	33288891	33288891	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagcgcctcattccgtcaaGaggaaagcgccggacgcaga	12	13	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33288891	A	A	33288891	2	1	57	1	0	0	0	0	0	0	0	1	18313	933	33	4		4	ZNF830	17	33288891	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	805639	33288891	47906319	2006	64995											
UNC45B	146862	broad.mit.edu	37	chr17	33486595	33486595	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaaggtttggggcttgctCaagccttttaagtgggcacc	15	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33486595	G	G	33486595	1	3	57	0	1	0	0	0	0	0	0	0	17115	841	29	4		4	UNC45B	17	33486595	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	197704	33486595	47708615	2007	64996											
UNC45B	146862	broad.mit.edu	37	chr17	33513716	33513716	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaaggaaagacttgattGttctctgagttgtgagtctt	10	4	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33513716	T	T	33513716	1	4	57	0	1	0	0	0	0	0	0	0	17115	1392	48	3		3	UNC45B	17	33513716	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	27121	33513716	47681494	2008	64997											
SLFN12	55106	broad.mit.edu	37	chr17	33750096	33750096	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaattcttttctgtaaaaTagacagagccattagaatag	7	5	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33750096	C	C	33750096	1	2	57	0	1	0	0	0	0	0	0	0	14848	1421	49	5		5	SLFN12	17	33750096	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	236380	33750096	47445114	2009	64998											
AP2B1	163	broad.mit.edu	37	chr17	34044310	34044310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccaatccctgaagctcaCtaatggcatttggattttgg	9	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34044310	A	A	34044310	3	1	57	1	0	0	0	0	1	0	0	0	743	565	20	3	2801	3	AP2B1	17	34044310	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	294214	34044310	47150900	2010	64999											
ACACA	31	broad.mit.edu	37	chr17	35468402	35468402	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcctcctcccctggcctatGaatgcactcattacaaatca	5	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35468402	T	T	35468402	1	4	57	0	1	0	0	0	0	0	0	0	106	1305	45	3		3	ACACA	17	35468402	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1424092	35468402	45726808	2011	65000											
ACACA	31	broad.mit.edu	37	chr17	35591928	35591928	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagattcttcttggtgacttGagcgtgagagaagatgtagt	13	4	2	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35591928	C	C	35591928	3	2	57	1	0	0	0	0	1	0	0	0	106	1299	45	4	4071	4	ACACA	17	35591928	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	123526	35591928	45603282	2012	65001											
SYNRG	11276	broad.mit.edu	37	chr17	35945442	35945442	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaatactaccttgggtttCacactgctcaaaagtctgag	8	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35945442	T	T	35945442	2	4	57	1	0	0	0	0	0	0	0	1	15579	813	29	4		4	SYNRG	17	35945442	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	353514	35945442	45249768	2013	65002											
MRPL45	84311	broad.mit.edu	37	chr17	36476730	36476730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctggagtgctgggtatgGttgcccaggactgtagacag	15	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36476730	T	T	36476730	1	4	57	0	1	0	0	0	0	0	0	0	9903	1276	44	3		3	MRPL45	17	36476730	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	531288	36476730	44718480	2014	65003											
SRCIN1	80725	broad.mit.edu	37	chr17	36709061	36709061	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttgtgggacacgtctctCtggatcttctccaccgattt	10	11	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36709061	T	T	36709061	2	4	57	1	0	0	0	0	0	0	0	1	15254	912	32	4		4	SRCIN1	17	36709061	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	232331	36709061	44486149	2015	65004											
LASP1	3927	broad.mit.edu	37	chr17	37074947	37074947	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accatcgtcaacgtgcagcaGatcgacgacggctggatgta	12	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37074947	A	A	37074947	2	1	57	1	0	0	0	0	0	0	0	1	8709	933	33	4		4	LASP1	17	37074947	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	365886	37074947	44120263	2016	65005											
CACNB1	782	broad.mit.edu	37	chr17	37343840	37343840	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttgtccgcacagcaaaTgccactggcttggtctagag	10	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37343840	C	C	37343840	2	2	57	1	0	0	0	0	0	0	0	1	2578	1451	51	5		5	CACNB1	17	37343840	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	268893	37343840	43851370	2017	65006											
STARD3	10948	broad.mit.edu	37	chr17	37815244	37815244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacatacccgaaccccaCtacctccccacactctctcc	1	23	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37815244	A	A	37815244	1	1	57	0	1	0	0	0	0	0	0	0	15375	580	20	3		3	STARD3	17	37815244	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	471404	37815244	43379966	2018	65007											
IKZF3	22806	broad.mit.edu	37	chr17	37985579	37985579	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggagagctgatttcttctCtacactaagcctaagcaata	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37985579	T	T	37985579	1	4	57	0	1	0	0	0	0	0	0	0	7686	928	32	4		4	IKZF3	17	37985579	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	170335	37985579	43209631	2019	65008											
IKZF3	22806	broad.mit.edu	37	chr17	37991415	37991415	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcccacctgagtagcCcctggtggtcttcatatgga	11	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37991415	G	G	37991415	1	3	57	0	1	0	0	0	0	0	0	0	7686	638	22	4		4	IKZF3	17	37991415	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5836	37991415	43203795	2020	65009											
RAPGEFL1	51195	broad.mit.edu	37	chr17	38345517	38345517	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccatacgcagccgcctttCagcatctgtgcaggacattc	9	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38345517	A	A	38345517	4	1	57	1	0	0	0	0	0	1	0	0	13157	838	29	3	400	3	RAPGEFL1	17	38345517	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	354102	38345517	42849693	2021	65010											
RARA	5914	broad.mit.edu	37	chr17	38487575	38487575	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccctatgctgggtggactCtccccgccaggcgctctgac	11	18	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38487575	G	G	38487575	2	3	57	1	0	0	0	0	0	0	0	1	13160	900	32	4		4	RARA	17	38487575	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	142058	38487575	42707635	2022	65011											
KRT25	147183	broad.mit.edu	37	chr17	38907272	38907272	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcttcatttcagtcagctcAttccgggctgaggttgtggc	12	11	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38907272	T	T	38907272	3	4	57	1	0	0	0	0	1	0	0	0	8533	214	8	5	477	5	KRT25	17	38907272	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	419697	38907272	42287938	2023	65012											
KRT40	125115	broad.mit.edu	37	chr17	39138624	39138624	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccacatgggcctccagatCagatttgcacagggtcagtt	10	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39138624	T	T	39138624	3	4	57	1	0	0	0	0	1	0	0	0	8549	826	29	4	693	4	KRT40	17	39138624	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	231352	39138624	42056586	2024	65013											
KRTAP9-2	83899	broad.mit.edu	37	chr17	39382869	39382869	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatcagattctgggaaactCacctctgaacagaagcccac	7	13	5	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39382869	T	T	39382869	1	4	57	0	1	0	0	0	0	0	0	0	8645	841	29	4		4	KRTAP9-2	17	39382869	5'Flank	SNP	C	TCGA-17-Z026-01A-01W-0746-08	244245	39382869	41812341	2025	65014											
KRT33B	3884	broad.mit.edu	37	chr17	39521737	39521737	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggacctggttcaggtcCacagcgggagcagcgtccac	13	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39521737	T	T	39521737	2	4	57	1	0	0	0	0	0	0	0	1	8541	581	21	4		4	KRT33B	17	39521737	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	138868	39521737	41673473	2026	65015											
KRT13	3860	broad.mit.edu	37	chr17	39661806	39661806	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaggcggaggctcatggtGagagcaggattgagagcagg	19	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39661806	A	A	39661806	1	1	57	0	1	0	0	0	0	0	0	0	8521	1305	45	4		4	KRT13	17	39661806	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	140069	39661806	41533404	2027	65016											
JUP	3728	broad.mit.edu	37	chr17	39681421	39681421	+	Intron	DEL	C	-	-													cccagtcctggcttctgcagCccccaggacagagacactca							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39681421	-	-	39681421	6	5	57	0	1	1	0	1	0	0	0	0	8042	754	26	0		0	JUP	17	39681421	Intron	DEL	C	TCGA-17-Z026-01A-01W-0746-08	19615	39681421	41513789	2028	65017											
KAT2A	2648	broad.mit.edu	37	chr17	40271501	40271501	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtgagggcggaaaccactGaacccaggctgggcctgcaa	15	11	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40271501	A	A	40271501	1	1	57	0	1	0	0	0	0	0	0	0	8051	1305	45	4		4	KAT2A	17	40271501	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	590080	40271501	40923709	2029	65018											
KCNH4	23415	broad.mit.edu	37	chr17	40327635	40327635	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaaagcaggtcaaagggcaGagcagcaataaggtcgatga	14	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40327635	C	C	40327635	3	2	57	1	0	0	0	0	1	0	0	0	8104	933	33	4	2148	4	KCNH4	17	40327635	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	56134	40327635	40867575	2030	65019											
ATP6V0A1	535	broad.mit.edu	37	chr17	40666036	40666036	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccggaactctagtttcccCctctgtgggcgcactgtcag	10	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40666036	T	T	40666036	1	4	57	0	1	0	0	0	0	0	0	0	1172	638	22	4		4	ATP6V0A1	17	40666036	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	338401	40666036	40529174	2031	65020											
COASY	80347	broad.mit.edu	37	chr17	40716076	40716076	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctccttgacttttgatgtCatccccctgctggaccccta	6	17	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40716076	T	T	40716076	2	4	57	1	0	0	0	0	0	0	0	1	3684	813	29	4		4	COASY	17	40716076	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	50040	40716076	40479134	2032	65021											
CNTD1	124817	broad.mit.edu	37	chr17	40963010	40963010	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaagtaagttcggggcagGgacttgatcatgggaccatt	14	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40963010	A	A	40963010	1	1	57	0	1	0	0	0	0	0	0	0	3667	1247	43	4		4	CNTD1	17	40963010	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	246934	40963010	40232200	2033	65022											
BRCA1	672	broad.mit.edu	37	chr17	41199690	41199690	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgtcctctgtccaggcatCtggctgcacaaccacaattg	8	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41199690	G	G	41199690	3	3	57	1	0	0	0	0	1	0	0	0	1507	913	32	4	162	4	BRCA1	17	41199690	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	236680	41199690	39995520	2034	65023											
ETV4	2118	broad.mit.edu	37	chr17	41613836	41613836	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaaactgctcatcactgtCtggtacctgagctgcagaga	9	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41613836	T	T	41613836	3	4	57	1	0	0	0	0	1	0	0	0	5323	913	32	4	1276	4	ETV4	17	41613836	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	414146	41613836	39581374	2035	65024											
ATXN7L3	56970	broad.mit.edu	37	chr17	42274204	42274204	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taactacactctctcttcatCattcaaggcaacaatttgtg	4	11	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42274204	T	T	42274204	1	4	57	0	1	0	0	0	0	0	0	0	1222	841	29	4		4	ATXN7L3	17	42274204	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	660368	42274204	38921006	2036	65025											
ITGA2B	3674	broad.mit.edu	37	chr17	42451938	42451938	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccatgccacccacccgTaccacccctcagacttttct	4	21	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42451938	C	C	42451938	1	2	57	0	1	0	0	0	0	0	0	0	7946	1653	57	5		5	ITGA2B	17	42451938	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	177734	42451938	38743272	2037	65026											
CCDC43	124808	broad.mit.edu	37	chr17	42759545	42759545	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaacaaggttgtatgagaGagaacaagctcactgaacca	10	7	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42759545	C	C	42759545	1	2	57	0	1	0	0	0	0	0	0	0	2843	957	33	4		4	CCDC43	17	42759545	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	307607	42759545	38435665	2038	65027											
ADAM11	4185	broad.mit.edu	37	chr17	42849053	42849053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagtgagtatggggaggGgccgggcagctgggagaagc	21	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42849053	T	T	42849053	1	4	57	0	1	0	0	0	0	0	0	0	235	1247	43	2		2	ADAM11	17	42849053	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	89508	42849053	38346157	2039	65028											
GJC1	10052	broad.mit.edu	37	chr17	42882276	42882276	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgatcttagcattggacaGttcggtgtactggatttgat	13	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42882276	A	A	42882276	2	1	57	1	0	0	0	0	0	0	0	1	6478	1020	36	4		4	GJC1	17	42882276	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	33223	42882276	38312934	2040	65029											
HEXIM1	10614	broad.mit.edu	37	chr17	43227077	43227077	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actacaagctgacctgggaaGagaagaaaaagttcgacgag	12	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43227077	A	A	43227077	3	1	57	1	0	0	0	0	1	0	0	0	7143	943	33	4	522	4	HEXIM1	17	43227077	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	344801	43227077	37968133	2041	65030											
ITGB3	3690	broad.mit.edu	37	chr17	45384961	45384961	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccacgaccgaaaagaattCgctaaatttgaggaagaacg	9	8	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45384961	T	T	45384961	2	4	57	1	0	0	0	0	0	0	0	1	7965	883	31	4		4	ITGB3	17	45384961	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2157884	45384961	35810249	2042	65031											
KPNB1	3837	broad.mit.edu	37	chr17	45741488	45741488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggactcacttgaatcaGtacttatttggggcctgggg	14	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45741488	T	T	45741488	1	4	57	0	1	0	0	0	0	0	0	0	8506	1044	36	3		3	KPNB1	17	45741488	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	356527	45741488	35453722	2043	65032											
MRPL10	124995	broad.mit.edu	37	chr17	45904481	45904481	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaagcttgtcctctgcactCagagccacattctggcagac	9	13	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45904481	G	G	45904481	2	3	57	1	0	0	0	0	0	0	0	1	9869	813	29	4		4	MRPL10	17	45904481	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	162993	45904481	35290729	2044	65033											
SKAP1	8631	broad.mit.edu	37	chr17	46262170	46262170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggggccatccgtacaCcgtagcccttaatgaggaag	15	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46262170	A	A	46262170	3	1	57	1	0	0	0	0	1	0	0	0	14468	507	18	3	621	3	SKAP1	17	46262170	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	357689	46262170	34933040	2045	65034											
HOXB3	3213	broad.mit.edu	37	chr17	46628303	46628303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccagatcttgatctgcCgctcgctgaggttcagcagg	13	11	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46628303	A	A	46628303	3	1	57	1	0	0	0	0	1	0	0	0	7369	652	23	1	610	1	HOXB3	17	46628303	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	366133	46628303	34566907	2046	65035											
IGF2BP1	10642	broad.mit.edu	37	chr17	47076515	47076515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttagagattgaacattcgGtgcccaaaaaacaaaggtag	10	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47076515	T	T	47076515	3	4	57	1	0	0	0	0	1	0	0	0	7643	1261	44	3	226	3	IGF2BP1	17	47076515	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	448212	47076515	34118695	2047	65036											
IGF2BP1	10642	broad.mit.edu	37	chr17	47120761	47120761	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcccctgtcagggtgtgctGactcttcctcctcatctttc	8	15	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47120761	A	A	47120761	1	1	57	0	1	0	0	0	0	0	0	0	7643	1305	45	4		4	IGF2BP1	17	47120761	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	44246	47120761	34074449	2048	65037											
B4GALNT2	124872	broad.mit.edu	37	chr17	47234049	47234049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctcagcctttgacggaGcccctgtccagattcaaggt	10	13	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47234049	T	T	47234049	1	4	57	0	1	0	0	0	0	0	0	0	1272	986	34	3		3	B4GALNT2	17	47234049	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	113288	47234049	33961161	2049	65038											
GNGT2	2793	broad.mit.edu	37	chr17	47284225	47284225	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccacgtactccttgattTcctttcccgctttggaaatc	5	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47284225	G	G	47284225	3	3	57	1	0	0	0	0	1	0	0	0	6598	1783	62	5	109	5	GNGT2	17	47284225	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	50176	47284225	33910985	2050	65039											
MYST2	11143	broad.mit.edu	37	chr17	47900664	47900664	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttattgatttcagtaagtGaaactgctaagtcattagtt	8	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47900664	A	A	47900664	1	1	57	0	1	0	0	0	0	0	0	0	10197	1305	45	4		4	MYST2	17	47900664	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	616439	47900664	33294546	2051	65040											
ITGA3	3675	broad.mit.edu	37	chr17	48148264	48148264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatctgagtatagttacaagGacccagaggaccaaggaaac	10	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48148264	T	T	48148264	3	4	57	1	0	0	0	0	1	0	0	0	7947	1174	41	3	739	3	ITGA3	17	48148264	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	247600	48148264	33046946	2052	65041											
ITGA3	3675	broad.mit.edu	37	chr17	48151853	48151853	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtccacaagaccttggtgcCcaggccagctgtgctggacc	12	15	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48151853	G	G	48151853	3	3	57	1	0	0	0	0	1	0	0	0	7947	623	22	4	1462	4	ITGA3	17	48151853	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3589	48151853	33043357	2053	65042											
SGCA	6442	broad.mit.edu	37	chr17	48245235	48245235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaatttggtatctgagtcCtctcctgccaggcccccgct	8	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48245235	A	A	48245235	1	1	57	0	1	0	0	0	0	0	0	0	14312	696	24	2		2	SGCA	17	48245235	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	93382	48245235	32949975	2054	65043											
CACNA1G	8913	broad.mit.edu	37	chr17	48646276	48646276	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcatccttctcaactgcgtGaccctgggcatgttccggcc	10	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48646276	A	A	48646276	2	1	57	1	0	0	0	0	0	0	0	1	2570	1277	45	4		4	CACNA1G	17	48646276	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	401041	48646276	32548934	2055	65044											
ABCC3	8714	broad.mit.edu	37	chr17	48750320	48750320	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccatttttcccaccccccGcctccctccagggcattaac	4	22	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48750320	A	A	48750320	1	1	57	0	1	0	0	0	0	0	0	0	54	1102	38	4		4	ABCC3	17	48750320	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	104044	48750320	32444890	2056	65045											
KIF2B	84643	broad.mit.edu	37	chr17	51901222	51901222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgatgacaaagcctccaaCgagttggtgtaccagttcac	9	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51901222	A	A	51901222	3	1	57	1	0	0	0	0	1	0	0	0	8368	535	19	3	830	3	KIF2B	17	51901222	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3150902	51901222	29293988	2057	65046											
KIF2B	84643	broad.mit.edu	37	chr17	51901871	51901871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaacaagcctcacaccCcattcagagccagcaaactc	6	16	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51901871	A	A	51901871	3	1	57	1	0	0	0	0	1	0	0	0	8368	623	22	2	1479	2	KIF2B	17	51901871	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	649	51901871	29293339	2058	65047											
STXBP4	252983	broad.mit.edu	37	chr17	53076912	53076912	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttataataagtattttttaAtaacatctgaaacattatct	2	4	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53076912	G	G	53076912	1	3	57	0	1	0	0	0	0	0	0	0	15473	116	4	5		5	STXBP4	17	53076912	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1175041	53076912	28118298	2059	65048											
TMEM100	55273	broad.mit.edu	37	chr17	53798105	53798105	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctttcttgctcctttgtctCactttccagcacaaggcact	6	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53798105	T	T	53798105	2	4	57	1	0	0	0	0	0	0	0	1	16138	813	29	4		4	TMEM100	17	53798105	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	721193	53798105	27397105	2060	65049											
ANKFN1	162282	broad.mit.edu	37	chr17	54559908	54559908	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagtagcttgtttcacctaGaaatattaacccagcctcct	5	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54559908	A	A	54559908	2	1	57	1	0	0	0	0	0	0	0	1	625	937	33	4		4	ANKFN1	17	54559908	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	761803	54559908	26635302	2061	65050											
RNF43	54894	broad.mit.edu	37	chr17	56434993	56434993	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttgagtaacaggggcctGgggtttctggtagcagcctc	14	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56434993	A	A	56434993	3	1	57	1	0	0	0	0	1	0	0	0	13606	1348	47	4	215	4	RNF43	17	56434993	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1875085	56434993	24760217	2062	65051											
HSF5	124535	broad.mit.edu	37	chr17	56553574	56553574	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcctcatttccttctaatCaatatcttctaatccttcct	0	14	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56553574	G	G	56553574	1	3	57	0	1	0	0	0	0	0	0	0	7466	841	29	4		4	HSF5	17	56553574	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	118581	56553574	24641636	2063	65052											
MTMR4	9110	broad.mit.edu	37	chr17	56572638	56572638	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgacttcacaccttctctCtgagcccactggcccccaaa	7	17	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56572638	G	G	56572638	3	3	57	1	0	0	0	0	1	0	0	0	10040	912	32	4	738	4	MTMR4	17	56572638	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	19064	56572638	24622572	2064	65053											
TEX14	56155	broad.mit.edu	37	chr17	56657049	56657049	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacttgaggttgggcaaatGcaccttgtattccttcaaag	10	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56657049	A	A	56657049	3	1	57	1	0	0	0	0	1	0	0	0	15900	1319	46	4	1192	4	TEX14	17	56657049	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	84411	56657049	24538161	2065	65054											
PPM1E	22843	broad.mit.edu	37	chr17	57057364	57057364	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacataagccatatatctgtGgggatgcagattctgcctcc	9	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57057364	A	A	57057364	3	1	57	1	0	0	0	0	1	0	0	0	12439	1348	47	4	1266	4	PPM1E	17	57057364	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	400315	57057364	24137846	2066	65055											
CLTC	1213	broad.mit.edu	37	chr17	57728457	57728457	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaaccatttaacattgatCttctgtagaacatgttggtt	6	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57728457	G	G	57728457	1	3	57	0	1	0	0	0	0	0	0	0	3598	928	32	4		4	CLTC	17	57728457	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	671093	57728457	23466753	2067	65056											
CLTC	1213	broad.mit.edu	37	chr17	57737831	57737831	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatcctgatttggctctgaGaatggctgtacgtaataact	9	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57737831	C	C	57737831	3	2	57	1	0	0	0	0	1	0	0	0	3598	942	33	4	1075	4	CLTC	17	57737831	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	9374	57737831	23457379	2068	65057											
HEATR6	63897	broad.mit.edu	37	chr17	58134512	58134512	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttgggcagtacgacaatgGaaatgcagagtcgaatgagc	13	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58134512	A	A	58134512	3	1	57	1	0	0	0	0	1	0	0	0	7100	1174	41	4	1605	4	HEATR6	17	58134512	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	396681	58134512	23060698	2069	65058											
HEATR6	63897	broad.mit.edu	37	chr17	58144882	58144882	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactggaagaactgaaggatGaggagactccatctttttct	10	7	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58144882	A	A	58144882	3	1	57	1	0	0	0	0	1	0	0	0	7100	1294	45	4	2446	4	HEATR6	17	58144882	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	10370	58144882	23050328	2070	65059											
USP32	84669	broad.mit.edu	37	chr17	58332590	58332590	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatttttcacactccagatCtgatagtcttccagagtaag	6	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58332590	T	T	58332590	2	4	57	1	0	0	0	0	0	0	0	1	17190	912	32	4		4	USP32	17	58332590	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	187708	58332590	22862620	2071	65060											
BCAS3	54828	broad.mit.edu	37	chr17	58887778	58887778	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatgagaaagagaccatGcaaagcctggacgattgcct	11	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58887778	T	T	58887778	1	4	57	0	1	0	0	0	0	0	0	0	1357	1334	46	3		3	BCAS3	17	58887778	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	555188	58887778	22307432	2072	65061											
TBX4	9496	broad.mit.edu	37	chr17	59543335	59543335	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcatcacccacgttccctCaactgcccacttgccacgcc	5	22	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59543335	T	T	59543335	1	4	57	0	1	0	0	0	0	0	0	0	15782	841	29	4		4	TBX4	17	59543335	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	655557	59543335	21651875	2073	65062											
METTL2A	339175	broad.mit.edu	37	chr17	60512535	60512535	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taactgtgctacacaagaatGagagtagacatagctcgatt	9	7	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60512535	A	A	60512535	1	1	57	0	1	0	0	0	0	0	0	0	9592	1305	45	4		4	METTL2A	17	60512535	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	969200	60512535	20682675	2074	65063											
TACO1	51204	broad.mit.edu	37	chr17	61678725	61678725	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccgcctggcagtgaaaggtGagaccctgacggtcacccag	13	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61678725	A	A	61678725	1	1	57	0	1	0	0	0	0	0	0	0	15623	1305	45	4		4	TACO1	17	61678725	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1166190	61678725	19516485	2075	65064											
MAP3K3	4215	broad.mit.edu	37	chr17	61769310	61769310	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggccaatcacttaaccattCtgaactttctgaaaagtggg	9	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61769310	T	T	61769310	1	4	57	0	1	0	0	0	0	0	0	0	9343	928	32	4		4	MAP3K3	17	61769310	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	90585	61769310	19425900	2076	65065											
GH2	2689	broad.mit.edu	37	chr17	61958354	61958354	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctctgaccacaggtctaCcccatccccacctggggaga	11	16	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61958354	G	G	61958354	1	3	57	0	1	0	0	0	0	0	0	0	6432	522	18	4		4	GH2	17	61958354	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	189044	61958354	19236856	2077	65066											
GH2	2689	broad.mit.edu	37	chr17	61958482	61958482	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgcaggaatgaatacttCtgctccttcaggatataggc	9	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958482	T	T	61958482	2	4	57	1	0	0	0	0	0	0	0	1	6432	912	32	4		4	GH2	17	61958482	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	128	61958482	19236728	2078	65067											
POLG2	11232	broad.mit.edu	37	chr17	62481962	62481962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagagaacacaaggaacCacattttttcgtccatctcg	7	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62481962	A	A	62481962	2	1	57	1	0	0	0	0	0	0	0	1	12296	581	21	2		2	POLG2	17	62481962	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	523480	62481962	18713248	2079	65068											
SMURF2	64750	broad.mit.edu	37	chr17	62551057	62551057	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgaataatttcaccataTgcattatgttcaacacagaa	5	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62551057	C	C	62551057	2	2	57	1	0	0	0	0	0	0	0	1	14934	1451	51	5		5	SMURF2	17	62551057	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	69095	62551057	18644153	2080	65069											
GNA13	10672	broad.mit.edu	37	chr17	63014378	63014378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttaaacacttactggttctCcaagtttatccaagttatcc	4	10	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63014378	A	A	63014378	3	1	57	1	0	0	0	0	1	0	0	0	6565	855	30	3	587	3	GNA13	17	63014378	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	463321	63014378	18180832	2081	65070											
RGS9	8787	broad.mit.edu	37	chr17	63173839	63173839	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgaccttatgttgtttttAttccatttagcctggaatgg	8	6	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63173839	G	G	63173839	1	3	57	0	1	0	0	0	0	0	0	0	13422	464	16	5		5	RGS9	17	63173839	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	159461	63173839	18021371	2082	65071											
RGS9	8787	broad.mit.edu	37	chr17	63174086	63174086	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggttaggggagaagtGggaccatggcaggatgctag	18	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63174086	A	A	63174086	1	1	57	0	1	0	0	0	0	0	0	0	13422	1363	47	4		4	RGS9	17	63174086	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	247	63174086	18021124	2083	65072											
CCDC46	201134	broad.mit.edu	37	chr17	64024523	64024523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcaatcatactagatgCctacaaggattttaagaaga	6	7	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64024523	A	A	64024523	3	1	57	1	0	0	0	0	1	0	0	0	2845	753	26	3	1581	3	CCDC46	17	64024523	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	850437	64024523	17170687	2084	65073											
APOH	350	broad.mit.edu	37	chr17	64216781	64216781	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaactgctgtgtcccgataGagggaattgtttccagctga	11	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64216781	C	C	64216781	2	2	57	1	0	0	0	0	0	0	0	1	806	929	33	4		4	APOH	17	64216781	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	192258	64216781	16978429	2085	65074											
CACNG5	27091	broad.mit.edu	37	chr17	64881106	64881106	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttctccctgtagagtgccGgggtgatgtctgtgtacctg	13	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64881106	C	C	64881106	3	2	57	1	0	0	0	0	1	0	0	0	2586	1116	39	4	912	4	CACNG5	17	64881106	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	664325	64881106	16314104	2086	65075											
KPNA2	3838	broad.mit.edu	37	chr17	66033133	66033133	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagtatacaggtgtggattCagtagatgcttgataattca	10	5	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66033133	T	T	66033133	1	4	57	0	1	0	0	0	0	0	0	0	8501	841	29	4		4	KPNA2	17	66033133	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1152027	66033133	15162077	2087	65076											
SLC16A6	9120	broad.mit.edu	37	chr17	66267264	66267264	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttgaggacaaaaccagctCcgatccttccgaaaacttct	7	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66267264	T	T	66267264	3	4	57	1	0	0	0	0	1	0	0	0	14525	855	30	4	542	4	SLC16A6	17	66267264	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	234131	66267264	14927946	2088	65077											
ABCA8	10351	broad.mit.edu	37	chr17	66883571	66883571	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaccaagaagtacagggaaAcatccaccagcgcctgccca	9	14	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66883571	C	C	66883571	3	2	57	1	0	0	0	0	1	0	0	0	38	43	2	5	1708	5	ABCA8	17	66883571	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	616307	66883571	14311639	2089	65078											
ABCA10	10349	broad.mit.edu	37	chr17	67148331	67148331	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggaaccaatacacctagttCaggggaaataaagaaaaaat	8	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67148331	A	A	67148331	1	1	57	0	1	0	0	0	0	0	0	0	29	841	29	3		3	ABCA10	17	67148331	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	264760	67148331	14046879	2090	65079											
MAP2K6	5608	broad.mit.edu	37	chr17	67532304	67532304	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatacccagagctaatggtGagtattgttagcaacgtaaa	9	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67532304	A	A	67532304	1	1	57	0	1	0	0	0	0	0	0	0	9333	1305	45	4		4	MAP2K6	17	67532304	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	383973	67532304	13662906	2091	65080											
KCNJ2	3759	broad.mit.edu	37	chr17	68171565	68171565	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtccgaggtcaacagcTtcacggctgccttcctcttc	10	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68171565	A	A	68171565	3	1	57	1	0	0	0	0	1	0	0	0	8121	1609	56	5	387	5	KCNJ2	17	68171565	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	639261	68171565	13023645	2092	65081											
SDK2	54549	broad.mit.edu	37	chr17	71394403	71394403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctggtctgggccatagcCcccacccacccccagccctg	9	21	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71394403	A	A	71394403	1	1	57	0	1	0	0	0	0	0	0	0	14082	638	22	2		2	SDK2	17	71394403	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3222838	71394403	9800807	2093	65082											
RAB37	326624	broad.mit.edu	37	chr17	72739511	72739512	+	Intron	INS	-	A	A													ttcccctgactcccacccatINSaagcagccaaggcaaggtct							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72739512	A	A	72739511	6	5	57	0	1	1	1	0	0	0	0	0	13035	1421	49	0		0	RAB37	17	72739511	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	1345108	72739511	8455699	2094	65083											
RECQL5	9400	broad.mit.edu	37	chr17	73647227	73647227	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccggggaagtaaatgatctCactgacactttgctccacat	9	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73647227	T	T	73647227	1	4	57	0	1	0	0	0	0	0	0	0	13311	841	29	4		4	RECQL5	17	73647227	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	907716	73647227	7547983	2095	65084											
UNK	85451	broad.mit.edu	37	chr17	73813435	73813435	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagaaacagcagcctaggcaGcccgtctaacctctgcggct	10	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73813435	C	C	73813435	3	2	57	1	0	0	0	0	1	0	0	0	17126	971	34	4	1399	4	UNK	17	73813435	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	166208	73813435	7381775	2096	65085											
EVPL	2125	broad.mit.edu	37	chr17	74005847	74005847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggactcctggaggagccCtgggtcctgctccaccttct	13	14	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74005847	A	A	74005847	3	1	57	1	0	0	0	0	1	0	0	0	5334	681	24	2	2666	2	EVPL	17	74005847	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	192412	74005847	7189363	2097	65086											
RNF157	114804	broad.mit.edu	37	chr17	74152362	74152362	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcaatagctccagatgacGacaaggtgagattctcactt	10	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74152362	A	A	74152362	3	1	57	1	0	0	0	0	1	0	0	0	13565	1059	37	4	609	4	RNF157	17	74152362	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	146515	74152362	7042848	2098	65087											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74622257	74622257	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcagggtcatgagcatgacTggtatcccatctccaggtga	12	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74622257	A	A	74622257	1	1	57	0	1	0	0	0	0	0	0	0	15341	1595	55	5		5	ST6GALNAC1	17	74622257	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	469895	74622257	6572953	2099	65088											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74623085	74623085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggggcaagagaggggCtggaggggggctggaggggg	27	3	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74623085	A	A	74623085	1	1	57	0	1	0	0	0	0	0	0	0	15341	812	28	3		3	ST6GALNAC1	17	74623085	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	828	74623085	6572125	2100	65089											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74625594	74625594	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggggcaccttgtcctgctCctccggcggtgcctggttgg	16	13	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74625594	T	T	74625594	3	4	57	1	0	0	0	0	1	0	0	0	15341	864	30	4	1503	4	ST6GALNAC1	17	74625594	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2509	74625594	6569616	2101	65090											
SEPT9	10801	broad.mit.edu	37	chr17	75398186	75398186	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaggtcgagacacccaactCcaccccaccccggagggtcc	11	18	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75398186	G	G	75398186	3	3	57	1	0	0	0	0	1	0	0	0	14184	855	30	4	217	4	SEPT9	17	75398186	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	772592	75398186	5797024	2102	65091											
SYNGR2	9144	broad.mit.edu	37	chr17	76167873	76167873	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggctggcgtggacgacttCatccagaattacgttgaccc	11	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76167873	T	T	76167873	2	4	57	1	0	0	0	0	0	0	0	1	15568	825	29	4		4	SYNGR2	17	76167873	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	769687	76167873	5027337	2103	65092											
CARD14	79092	broad.mit.edu	37	chr17	78156489	78156489	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagactcgagggaagaaCggggccatcgccttcctgga	14	11	0	3	rs148170776		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78156489	T	T	78156489	2	4	57	1	0	0	0	0	0	0	0	1	2672	535	19	4		4	CARD14	17	78156489	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1988616	78156489	3038721	2104	65093											
FN3KRP	79672	broad.mit.edu	37	chr17	80680682	80680682	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttacttttgcttgcaagggAgaggaggtgggcaggaggaa	17	4	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80680682	T	T	80680682	4	4	57	1	0	0	0	0	0	1	0	0	6022	296	11	5	402	5	FN3KRP	17	80680682	Nonsense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2524193	80680682	514528	2105	65094											
MYOM1	8736	broad.mit.edu	37	chr18	3089131	3089131	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctctacattctattttaTttcccttgaatcaaatatta	1	9	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3089131	A	A	3089131	1	1	57	0	1	0	0	0	0	0	0	0	10185	1508	52	5		5	MYOM1	18	3089131	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08		3089131	74988117	2106	65095											
MYL12A	10627	broad.mit.edu	37	chr18	3253494	3253494	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctttcatcttgatttcatGagtcttaaagctctgtaaag	7	8	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3253494	C	C	3253494	1	2	57	0	1	0	0	0	0	0	0	0	10139	1305	45	4		4	MYL12A	18	3253494	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	164363	3253494	74823754	2107	65096											
APCDD1	147495	broad.mit.edu	37	chr18	10471851	10471851	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggacgtggcctatgacctCtggcgagaggagaacggctg	16	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10471851	G	G	10471851	2	3	57	1	0	0	0	0	0	0	0	1	767	900	32	4		4	APCDD1	18	10471851	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	7218357	10471851	67605397	2108	65097											
CTAGE1	64693	broad.mit.edu	37	chr18	19996719	19996719	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataattcagtcattactttAagtttctgctgaagcttctg	6	7	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19996719	T	T	19996719	2	4	57	1	0	0	0	0	0	0	0	1	4026	349	13	5		5	CTAGE1	18	19996719	Silent	SNP	A	TCGA-17-Z026-01A-01W-0746-08	9524868	19996719	58080529	2109	65098											
RIOK3	8780	broad.mit.edu	37	chr18	21053585	21053585	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaaaagaaatgcacaatctCgcaaggtaaagaaaatattg	8	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21053585	T	T	21053585	2	4	57	1	0	0	0	0	0	0	0	1	13490	871	31	4		4	RIOK3	18	21053585	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1056866	21053585	57023663	2110	65099											
MEP1B	4225	broad.mit.edu	37	chr18	29772463	29772463	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagattcttaatcaatcaatCaatcaatcaatgtatgttga	5	6	6	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29772463	T	T	29772463	1	4	57	0	1	0	0	0	0	0	0	0	9569	841	29	4		4	MEP1B	18	29772463	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8718878	29772463	48304785	2111	65100											
MAPRE2	10982	broad.mit.edu	37	chr18	32706835	32706835	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgttgtaagctcttttcAtatcattcattttctatgta	5	6	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32706835	T	T	32706835	1	4	57	0	1	0	0	0	0	0	0	0	9387	232	8	5		5	MAPRE2	18	32706835	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	2934372	32706835	45370413	2112	65101											
SETBP1	26040	broad.mit.edu	37	chr18	42281814	42281814	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtaggaagccctgtctTatggttgtttttgtttgttt	12	4	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42281814	C	C	42281814	1	2	57	0	1	0	0	0	0	0	0	0	14242	1769	61	5		5	SETBP1	18	42281814	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	9574979	42281814	35795434	2113	65102											
SETBP1	26040	broad.mit.edu	37	chr18	42281875	42281875	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaacttcttagggtctaTttatatattatatttgactc	4	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42281875	C	C	42281875	1	2	57	0	1	0	0	0	0	0	0	0	14242	1508	52	5		5	SETBP1	18	42281875	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	61	42281875	35795373	2114	65103											
SLC14A2	8170	broad.mit.edu	37	chr18	43247877	43247877	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgaacaaccccctcagCggcatcctcatcatcctcgg	7	16	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43247877	G	G	43247877	3	3	57	1	0	0	0	0	1	0	0	0	14510	767	27	4	1847	4	SLC14A2	18	43247877	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	966002	43247877	34829371	2115	65104											
ATP5A1	498	broad.mit.edu	37	chr18	43664208	43664208	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aactaatttactagaacaatGacaaaactgaactggtattt	5	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43664208	C	C	43664208	1	2	57	0	1	0	0	0	0	0	0	0	1151	1305	45	4		4	ATP5A1	18	43664208	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	416331	43664208	34413040	2116	65105											
ZBTB7C	201501	broad.mit.edu	37	chr18	45723217	45723218	+	Intron	DNP	CC	AA	AA													tgaagagaagaaggaaaatgCccttcagaagaacatatctg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	45723218	AA	AA	45723217	1	1	57	0	1	0	0	0	0	0	0	0	17681	754	26	3		3	ZBTB7C	18	45723217	Intron	DNP	CC	TCGA-17-Z026-01A-01W-0746-08	2059009	45723217	32354031	2117	65106											
MYO5B	4645	broad.mit.edu	37	chr18	47365423	47365423	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaggtcatggctaagatatCtggttcccgaaaggcagagg	15	7	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47365423	G	G	47365423	1	3	57	0	1	0	0	0	0	0	0	0	10173	928	32	4		4	MYO5B	18	47365423	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1642206	47365423	30711825	2118	65107											
MYO5B	4645	broad.mit.edu	37	chr18	47432748	47432748	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagacccccatcttcccCaccatgatctgctgccctga	7	18	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47432748	A	A	47432748	1	1	57	0	1	0	0	0	0	0	0	0	10173	609	21	2		2	MYO5B	18	47432748	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	67325	47432748	30644500	2119	65108											
DCC	1630	broad.mit.edu	37	chr18	50683754	50683755	+	Missense_Mutation	DNP	GG	TT	TT													agctccagtgtcctcccttcGgctcccagagatgtggtccc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50683755	TT	TT	50683754	3	4	57	1	0	0	0	0	1	0	0	0	4315	1103	39	1	1320	1	DCC	18	50683754	Missense_Mutation	DNP	GG	TCGA-17-Z026-01A-01W-0746-08	3251006	50683754	27393494	2120	65109											
DCC	1630	broad.mit.edu	37	chr18	51013320	51013320	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgaggtttcggagcaggaaGaagtcagtgtaatgcatttt	13	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51013320	A	A	51013320	3	1	57	1	0	0	0	0	1	0	0	0	4315	942	33	4	3992	4	DCC	18	51013320	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	329566	51013320	27063928	2121	65110											
CCDC68	80323	broad.mit.edu	37	chr18	52602106	52602106	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatttgactgtgtttttctTcaagtttttcagcaacttga	6	6	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52602106	A	A	52602106	3	1	57	1	0	0	0	0	1	0	0	0	2868	1783	62	5	486	5	CCDC68	18	52602106	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1588786	52602106	25475142	2122	65111											
WDR7	23335	broad.mit.edu	37	chr18	54398738	54398738	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacctaaaacaagctatgacGagacgtagtcttgctgctct	8	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54398738	A	A	54398738	2	1	57	1	0	0	0	0	0	0	0	1	17447	1045	37	4		4	WDR7	18	54398738	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1796632	54398738	23678510	2123	65112											
WDR7	23335	broad.mit.edu	37	chr18	54603241	54603241	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccctttacagtttattctaGaacaatgcaagttaataatt	4	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54603241	T	T	54603241	1	4	57	0	1	0	0	0	0	0	0	0	17447	957	33	3		3	WDR7	18	54603241	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	204503	54603241	23474007	2124	65113											
ATP8B1	5205	broad.mit.edu	37	chr18	55338753	55338753	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcattcgatgtaaccgttCataaataacagtgtcagcac	6	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55338753	A	A	55338753	4	1	57	1	0	0	0	0	0	1	0	0	1198	835	29	3	1924	3	ATP8B1	18	55338753	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	735512	55338753	22738495	2125	65114											
CCBE1	147372	broad.mit.edu	37	chr18	57133973	57133973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacttgccctacttaccaGtgtcattgggatatttgtct	8	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57133973	T	T	57133973	3	4	57	1	0	0	0	0	1	0	0	0	2757	1029	36	3	697	3	CCBE1	18	57133973	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1795220	57133973	20943275	2126	65115											
RNF152	220441	broad.mit.edu	37	chr18	59511421	59511432	+	Intron	DEL	AGGAAGGGAAGG	-	-													agggaggaagagaggaaggaAggaagggaaggagggaggga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59511432	-	-	59511421	6	5	57	0	1	1	0	1	0	0	0	0	13564	87	3	0		0	RNF152	18	59511421	Intron	DEL	AGGAAGGGAAGG	TCGA-17-Z026-01A-01W-0746-08	2377448	59511421	18565827	2127	65116											
SERPINB13	5275	broad.mit.edu	37	chr18	61264326	61264326	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagaggcggtcctggctgCcatggggatgggcgatgcct	17	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61264326	T	T	61264326	3	4	57	1	0	0	0	0	1	0	0	0	14213	739	26	4	931	4	SERPINB13	18	61264326	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1752905	61264326	16812922	2128	65117											
SERPINB4	6318	broad.mit.edu	37	chr18	61310740	61310740	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggaatagaagatgttgttCtcttttgattttctgaactg	11	4	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61310740	T	T	61310740	2	4	57	1	0	0	0	0	0	0	0	1	14216	912	32	4		4	SERPINB4	18	61310740	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	46414	61310740	16766508	2129	65118											
CNDP2	55748	broad.mit.edu	37	chr18	72180810	72180810	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaggctctttggtggacaaGagggggaacatcctgatccc	13	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72180810	A	A	72180810	2	1	57	1	0	0	0	0	0	0	0	1	3626	933	33	4		4	CNDP2	18	72180810	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	10870070	72180810	5896438	2130	65119											
ZNF407	55628	broad.mit.edu	37	chr18	72352849	72352849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgcaagtattccattttgGgtacagaaattcttaattag	7	5	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72352849	T	T	72352849	1	4	57	0	1	0	0	0	0	0	0	0	18014	1247	43	2		2	ZNF407	18	72352849	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	172039	72352849	5724399	2131	65120											
C18orf22	79863	broad.mit.edu	37	chr18	77798591	77798591	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacgcacacatggaggctgtCctgcagagaagtgccgcgca	13	12	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77798591	T	T	77798591	2	4	57	1	0	0	0	0	0	0	0	1	1916	842	30	4		4	C18orf22	18	77798591	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	5445742	77798591	278657	2132	65121											
GNA11	2767	broad.mit.edu	37	chr19	3119001	3119001	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgtgacatccatcatgtttCtcgtcgccctcagcgaatac	7	14	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3119001	G	G	3119001	3	3	57	1	0	0	0	0	1	0	0	0	6563	913	32	4	703	4	GNA11	19	3119001	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08		3119001	56009982	2133	65122											
RANBP3	8498	broad.mit.edu	37	chr19	5941646	5941646	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttacctgactgtgagggtGggaactgggttaaagaggat	15	4	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5941646	A	A	5941646	3	1	57	1	0	0	0	0	1	0	0	0	13137	1348	47	4	1363	4	RANBP3	19	5941646	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2822645	5941646	53187337	2134	65123											
INSR	3643	broad.mit.edu	37	chr19	7174523	7174523	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagggtctgcactgcttttCttccccgctcacagctcaga	9	15	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7174523	G	G	7174523	1	3	57	0	1	0	0	0	0	0	0	0	7843	928	32	4		4	INSR	19	7174523	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1232877	7174523	51954460	2135	65124											
PEX11G	92960	broad.mit.edu	37	chr19	7550711	7550711	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctactccctagagccccaCaaaccctgttacctgtgccc	5	20	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7550711	G	G	7550711	1	3	57	0	1	0	0	0	0	0	0	0	11834	493	17	4		4	PEX11G	19	7550711	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	376188	7550711	51578272	2136	65125											
PNPLA6	10908	broad.mit.edu	37	chr19	7618740	7618740	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggttcgcaccacaaatctCatccattgggttcttagcag	8	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7618740	T	T	7618740	1	4	57	0	1	0	0	0	0	0	0	0	12264	841	29	4		4	PNPLA6	19	7618740	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	68029	7618740	51510243	2137	65126											
STXBP2	6813	broad.mit.edu	37	chr19	7705871	7705871	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggagattcaccttgccttCctcccctacgaggcccaggt	9	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7705871	T	T	7705871	2	4	57	1	0	0	0	0	0	0	0	1	15471	854	30	4		4	STXBP2	19	7705871	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	87131	7705871	51423112	2138	65127											
MUC16	94025	broad.mit.edu	37	chr19	8998458	8998458	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctccagtaacttcaccacCaccaactcccatcaccctca	1	20	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8998458	T	T	8998458	1	4	57	0	1	0	0	0	0	0	0	0	10067	609	21	4		4	MUC16	19	8998458	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1292587	8998458	50130525	2139	65128											
MUC16	94025	broad.mit.edu	37	chr19	9012759	9012759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggggcggagtgaggaGggtggagcactaaccagacc	21	7	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9012759	T	T	9012759	1	4	57	0	1	0	0	0	0	0	0	0	10067	1015	35	2		2	MUC16	19	9012759	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	14301	9012759	50116224	2140	65129											
MUC16	94025	broad.mit.edu	37	chr19	9017374	9017374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagactgttcctgtccagGgtgtaggggcccagctcttt	13	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9017374	T	T	9017374	2	4	57	1	0	0	0	0	0	0	0	1	10067	1219	43	2		2	MUC16	19	9017374	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4615	9017374	50111609	2141	65130											
MUC16	94025	broad.mit.edu	37	chr19	9072068	9072068	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgttggctttcacattGgtctcttctgtgtttataga	10	6	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9072068	T	T	9072068	2	4	57	1	0	0	0	0	0	0	0	1	10067	1335	47	2		2	MUC16	19	9072068	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	54694	9072068	50056915	2142	65131											
MUC16	94025	broad.mit.edu	37	chr19	9088056	9088056	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgaactagcgtgtgctccGaggtggatgctgggtgtgtt	16	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9088056	T	T	9088056	2	4	57	1	0	0	0	0	0	0	0	1	10067	1045	37	3		3	MUC16	19	9088056	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	15988	9088056	50040927	2143	65132											
MUC16	94025	broad.mit.edu	37	chr19	9089809	9089809	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccattgtatatgatggcTttgtccctcctggaggactt	9	9	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9089809	A	A	9089809	3	1	57	1	0	0	0	0	1	0	0	0	10067	1609	56	5	41853	5	MUC16	19	9089809	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1753	9089809	50039174	2144	65133											
MUC16	94025	broad.mit.edu	37	chr19	9089921	9089921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggatgtctcagatgatgCtgtggctctggtgagtaggt	16	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9089921	A	A	9089921	3	1	57	1	0	0	0	0	1	0	0	0	10067	797	28	3	41965	3	MUC16	19	9089921	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	112	9089921	50039062	2145	65134											
MUC16	94025	broad.mit.edu	37	chr19	9090347	9090347	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggaactctgcctcccagAggtgctgcctgtggttctga	13	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9090347	C	C	9090347	3	2	57	1	0	0	0	0	1	0	0	0	10067	304	11	5	42391	5	MUC16	19	9090347	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	426	9090347	50038636	2146	65135											
FBXL12	54850	broad.mit.edu	37	chr19	9922150	9922150	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagccaggccatggagatctCgcagctgtgcagctccaggg	15	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9922150	T	T	9922150	3	4	57	1	0	0	0	0	1	0	0	0	5765	893	31	4	581	4	FBXL12	19	9922150	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	831803	9922150	49206833	2147	65136											
COL5A3	50509	broad.mit.edu	37	chr19	10099811	10099811	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcacctaccttcactccccGaggtccaggatagcccggag	9	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10099811	A	A	10099811	3	1	57	1	0	0	0	0	1	0	0	0	3730	1057	37	4	3267	4	COL5A3	19	10099811	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	177661	10099811	49029172	2148	65137											
COL5A3	50509	broad.mit.edu	37	chr19	10103535	10103535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccaggagagcctctggGgccaagcagtcctcgtggac	17	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10103535	T	T	10103535	3	4	57	1	0	0	0	0	1	0	0	0	3730	1232	43	2	3609	2	COL5A3	19	10103535	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3724	10103535	49025448	2149	65138											
RDH8	50700	broad.mit.edu	37	chr19	10124180	10124180	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaggggatcaacatggccGctgcaccccggactgtgttg	16	11	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10124180	A	A	10124180	3	1	57	1	0	0	0	0	1	0	0	0	13304	1087	38	4	9	4	RDH8	19	10124180	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	20645	10124180	49004803	2150	65139											
CDC37	11140	broad.mit.edu	37	chr19	10502247	10502247	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcacacactgacatccttctCatcgcccgtcttgggaacag	7	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10502247	T	T	10502247	3	4	57	1	0	0	0	0	1	0	0	0	3098	835	29	4	23	4	CDC37	19	10502247	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	378067	10502247	48626736	2151	65140											
KEAP1	9817	broad.mit.edu	37	chr19	10610221	10610221	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacggacaacgctgtcgatCtggtacatgacagcaccgtt	11	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610221	A	A	10610221	3	1	57	1	0	0	0	0	1	0	0	0	8211	912	32	3	1405	3	KEAP1	19	10610221	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	107974	10610221	48518762	2152	65141											
AP1M2	10053	broad.mit.edu	37	chr19	10692321	10692321	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgtacctggagggagGgcggcagggacaagcagctg	19	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10692321	T	T	10692321	1	4	57	0	1	0	0	0	0	0	0	0	737	1247	43	2		2	AP1M2	19	10692321	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	82100	10692321	48436662	2153	65142											
ELAVL3	1995	broad.mit.edu	37	chr19	11576947	11576947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttggggacagtcagttgGggtgggcggtcatgggggat	23	4	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11576947	A	A	11576947	1	1	57	0	1	0	0	0	0	0	0	0	5093	1247	43	4		4	ELAVL3	19	11576947	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	884626	11576947	47552036	2154	65143											
ZNF69	7620	broad.mit.edu	37	chr19	12015468	12015468	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcatttttgacaggagtCtcatagaaaagaaagtcaat	7	6	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12015468	G	G	12015468	3	3	57	1	0	0	0	0	1	0	0	0	18222	913	32	4	228	4	ZNF69	19	12015468	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	438521	12015468	47113515	2155	65144											
ZNF442	79973	broad.mit.edu	37	chr19	12460637	12460637	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagttttttcatgtcctcGaaggaaacgagaacgagtga	12	6	1	3	rs147649018		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12460637	T	T	12460637	2	4	57	1	0	0	0	0	0	0	0	1	18042	1066	37	3		3	ZNF442	19	12460637	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	445169	12460637	46668346	2156	65145											
GCDH	2639	broad.mit.edu	37	chr19	13002761	13002761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaggagagactcatgcctCgcatcctgttggccaatcgc	11	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13002761	T	T	13002761	3	4	57	1	0	0	0	0	1	0	0	0	6349	884	31	4	254	4	GCDH	19	13002761	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	542124	13002761	46126222	2157	65146											
FARSA	2193	broad.mit.edu	37	chr19	13035802	13035802	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccgggcctcgtccagcttCcagttatacttgtaccttca	7	14	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13035802	T	T	13035802	4	4	57	1	0	0	0	0	0	1	0	0	5736	856	30	4	604	4	FARSA	19	13035802	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	33041	13035802	46093181	2158	65147											
CACNA1A	773	broad.mit.edu	37	chr19	13387897	13387897	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcaccttgatcaccatctCaaaggtaaagacgcctgtaa	6	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13387897	G	G	13387897	3	3	57	1	0	0	0	0	1	0	0	0	2564	835	29	4	3854	4	CACNA1A	19	13387897	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	352095	13387897	45741086	2159	65148											
ZNF333	84449	broad.mit.edu	37	chr19	14815883	14815883	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggggccggggctgttcctGaggatgcagctggtgccctc	17	12	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14815883	T	T	14815883	2	4	57	1	0	0	0	0	0	0	0	1	17976	1277	45	3		3	ZNF333	19	14815883	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1427986	14815883	44313100	2160	65149											
SLC1A6	6511	broad.mit.edu	37	chr19	15064958	15064958	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccctcacctgatggttgtGatctgacccaggttgagctc	10	14	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15064958	C	C	15064958	3	2	57	1	0	0	0	0	1	0	0	0	14549	1280	45	4	353	4	SLC1A6	19	15064958	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	249075	15064958	44064025	2161	65150											
CASP14	23581	broad.mit.edu	37	chr19	15164405	15164405	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacatgtttcggcagctgaGattcgaaagcaccatgaaaa	9	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15164405	A	A	15164405	3	1	57	1	0	0	0	0	1	0	0	0	2696	942	33	4	146	4	CASP14	19	15164405	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	99447	15164405	43964578	2162	65151											
SYDE1	85360	broad.mit.edu	37	chr19	15219030	15219030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttagagaaacagctgcgtGggatagggggacccaggaag	16	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15219030	T	T	15219030	1	4	57	0	1	0	0	0	0	0	0	0	15554	1363	47	2		2	SYDE1	19	15219030	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	54625	15219030	43909953	2163	65152											
CYP4F11	57834	broad.mit.edu	37	chr19	16025122	16025122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccatccttacctgggccCtgccgagaagggaataaaag	12	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16025122	A	A	16025122	3	1	57	1	0	0	0	0	1	0	0	0	4219	681	24	2	192	2	CYP4F11	19	16025122	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	806092	16025122	43103861	2164	65153											
CYP4F11	57834	broad.mit.edu	37	chr19	16034628	16034628	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagagaagcctaccttgctCagcagaagcacatcaatgaa	8	12	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16034628	T	T	16034628	2	4	57	1	0	0	0	0	0	0	0	1	4219	813	29	4		4	CYP4F11	19	16034628	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	9506	16034628	43094355	2165	65154											
MED26	9441	broad.mit.edu	37	chr19	16689250	16689250	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaaaagccatttgtcaggtCcctgtccttctccactggga	8	12	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16689250	T	T	16689250	1	4	57	0	1	0	0	0	0	0	0	0	9537	870	30	4		4	MED26	19	16689250	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	654622	16689250	42439733	2166	65155											
FAM129C	199786	broad.mit.edu	37	chr19	17654261	17654261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtgttctgtgggtacgGggtggcatggggtggcagtg	22	4	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17654261	T	T	17654261	1	4	57	0	1	0	0	0	0	0	0	0	5484	1247	43	2		2	FAM129C	19	17654261	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	965011	17654261	41474722	2167	65156											
UNC13A	23025	broad.mit.edu	37	chr19	17785582	17785582	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgtggcagtgagagtAggggtcagcgctggggctca	17	8	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17785582	T	T	17785582	1	4	57	0	1	0	0	0	0	0	0	0	17110	435	15	5		5	UNC13A	19	17785582	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	131321	17785582	41343401	2168	65157											
SF4	57794	broad.mit.edu	37	chr19	19407828	19407828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgagggagaggcatccacgtCcctctgcaccagttcagcag	12	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19407828	A	A	19407828	3	1	57	1	0	0	0	0	1	0	0	0	14268	855	30	3	752	3	SF4	19	19407828	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1622246	19407828	39721155	2169	65158											
KIAA0892	23383	broad.mit.edu	37	chr19	19446587	19446587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccctttaaggaattctcCacttaaataaaaagaatgta	5	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19446587	T	T	19446587	1	4	57	0	1	0	0	0	0	0	0	0	8266	609	21	4		4	KIAA0892	19	19446587	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	38759	19446587	39682396	2170	65159											
ZNF626	199777	broad.mit.edu	37	chr19	20806810	20806810	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttaaaagattttccccatTcatcacattcacatggtttc	5	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20806810	A	A	20806810	1	1	57	0	1	0	0	0	0	0	0	0	18177	1798	62	5		5	ZNF626	19	20806810	3'UTR	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1360223	20806810	38322173	2171	65160											
ZNF429	353088	broad.mit.edu	37	chr19	21719513	21719513	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcagcccttactaaccatAagagaatttatgttggtgag	8	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21719513	T	T	21719513	4	4	57	1	0	0	0	0	0	1	0	0	18029	363	13	5	672	5	ZNF429	19	21719513	Nonsense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	912703	21719513	37409470	2172	65161											
ZNF257	113835	broad.mit.edu	37	chr19	22270820	22270820	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagacctttgcccagagcgaGacataaaatattttttccaa	6	9	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22270820	C	C	22270820	3	2	57	1	0	0	0	0	1	0	0	0	17926	942	33	4	282	4	ZNF257	19	22270820	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	551307	22270820	36858163	2173	65162											
ZNF492	57615	broad.mit.edu	37	chr19	22817173	22817173	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtctagtgttcgctgttCtgcgtcctctggtcctagag	12	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22817173	G	G	22817173	1	3	57	0	1	0	0	0	0	0	0	0	18070	928	32	4		4	ZNF492	19	22817173	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	546353	22817173	36311810	2174	65163											
ZNF536	9745	broad.mit.edu	37	chr19	31039656	31039656	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacagtcaactgcaaagacCaagcccgggaggcgagtaag	12	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31039656	G	G	31039656	3	3	57	1	0	0	0	0	1	0	0	0	18101	595	21	4	3140	4	ZNF536	19	31039656	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	8222483	31039656	28089327	2175	65164											
SLC7A9	11136	broad.mit.edu	37	chr19	33349427	33349427	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacgatccaagaagcaggaTagagaacacggtcaccaaat	10	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33349427	A	A	33349427	3	1	57	1	0	0	0	0	1	0	0	0	14819	1406	49	5	587	5	SLC7A9	19	33349427	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	2309771	33349427	25779556	2176	65165											
RHPN2	85415	broad.mit.edu	37	chr19	33482907	33482907	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatcgttaggtgtaggatTtgaaggctggatcagacgct	14	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33482907	G	G	33482907	1	3	57	0	1	0	0	0	0	0	0	0	13460	1856	64	5		5	RHPN2	19	33482907	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	133480	33482907	25646076	2177	65166											
ZNF599	148103	broad.mit.edu	37	chr19	35260600	35260600	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactgggctctgtggaggcaGatggtgccgctgacagaata	15	9	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35260600	T	T	35260600	1	4	57	0	1	0	0	0	0	0	0	0	18156	957	33	3		3	ZNF599	19	35260600	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1777693	35260600	23868383	2178	65167											
GAPDHS	26330	broad.mit.edu	37	chr19	36027890	36027890	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagctgactgtgggcatcaaTgggtgagtctactccagccc	13	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36027890	A	A	36027890	3	1	57	1	0	0	0	0	1	0	0	0	6299	1461	51	5	249	5	GAPDHS	19	36027890	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	767290	36027890	23101093	2179	65168											
ARHGAP33	115703	broad.mit.edu	37	chr19	36272067	36272067	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagtgccccaggtgctgcGctgctgctccgagttcattg	12	15	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36272067	C	C	36272067	3	2	57	1	0	0	0	0	1	0	0	0	884	1087	38	4	1044	4	ARHGAP33	19	36272067	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	244177	36272067	22856916	2180	65169											
ARHGAP33	115703	broad.mit.edu	37	chr19	36278945	36278945	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagccccccagcaccctgctCggcgccctacaccgcctgag	9	22	0	1	rs140331892	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36278945	T	T	36278945	3	4	57	1	0	0	0	0	1	0	0	0	884	875	31	4	3560	4	ARHGAP33	19	36278945	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6878	36278945	22850038	2181	65170											
NPHS1	4868	broad.mit.edu	37	chr19	36339821	36339821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcataatttgggggcacaCacagatggttctctgaggca	13	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36339821	A	A	36339821	1	1	57	0	1	0	0	0	0	0	0	0	10677	493	17	3		3	NPHS1	19	36339821	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	60876	36339821	22789162	2182	65171											
C19orf46	163183	broad.mit.edu	37	chr19	36496283	36496283	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtgacgtgctaagcgtttCtggtggccgaggccagactc	15	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36496283	T	T	36496283	2	4	57	1	0	0	0	0	0	0	0	1	1948	912	32	4		4	C19orf46	19	36496283	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	156462	36496283	22632700	2183	65172											
ZNF260	339324	broad.mit.edu	37	chr19	37005960	37005960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcgagagcacactttacCacattcagtgcattcatgag	8	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37005960	A	A	37005960	3	1	57	1	0	0	0	0	1	0	0	0	17928	594	21	2	1061	2	ZNF260	19	37005960	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	509677	37005960	22123023	2184	65173											
ZNF569	148266	broad.mit.edu	37	chr19	37904467	37904467	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tataataagcatggaaaactGagagaaggctttaccacatt	8	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37904467	A	A	37904467	4	1	57	1	0	0	0	0	0	1	0	0	18127	1299	45	4	971	4	ZNF569	19	37904467	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	898507	37904467	21224516	2185	65174											
ZNF781	163115	broad.mit.edu	37	chr19	38160602	38160602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgttaaatgccttcccaCattctgtacattcgtaaagt	6	9	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38160602	A	A	38160602	3	1	57	1	0	0	0	0	1	0	0	0	18283	478	17	3	539	3	ZNF781	19	38160602	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	256135	38160602	20968381	2186	65175											
ZNF573	126231	broad.mit.edu	37	chr19	38283491	38283491	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctttcccagaggtttgaaGagctgaaaaagaaaatatag	9	5	1	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38283491	T	T	38283491	1	4	57	0	1	0	0	0	0	0	0	0	18132	957	33	3		3	ZNF573	19	38283491	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	122889	38283491	20845492	2187	65176											
CATSPERG	57828	broad.mit.edu	37	chr19	38849157	38849157	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggcatcttctgtaacccGtacaacaatctgatcttcat	6	11	5	1	rs147779129	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38849157	A	A	38849157	2	1	57	1	0	0	0	0	0	0	0	1	2718	1132	40	4		4	CATSPERG	19	38849157	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	565666	38849157	20279826	2188	65177											
RYR1	6261	broad.mit.edu	37	chr19	38968507	38968507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaaggcaacgtccacaGcaggtgccggggctgggggg	18	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38968507	T	T	38968507	3	4	57	1	0	0	0	0	1	0	0	0	13879	971	34	3	4569	3	RYR1	19	38968507	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	119350	38968507	20160476	2189	65178											
MAP4K1	11184	broad.mit.edu	37	chr19	39106964	39106964	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattatttgcaggaaagcccCtggtttgcttctgtcttgtt	9	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39106964	T	T	39106964	1	4	57	0	1	0	0	0	0	0	0	0	9351	696	24	4		4	MAP4K1	19	39106964	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	138457	39106964	20022019	2190	65179											
PAPL	390928	broad.mit.edu	37	chr19	39575991	39575991	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccaggggtccctgggggctCccagcgctgccccagagcaa	14	16	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39575991	T	T	39575991	3	4	57	1	0	0	0	0	1	0	0	0	11521	855	30	4	84	4	PAPL	19	39575991	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	469027	39575991	19552992	2191	65180											
ZFP36	7538	broad.mit.edu	37	chr19	39898698	39898698	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctatgtcggaccttctcaGagagtgggcgctgccgctac	13	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39898698	A	A	39898698	3	1	57	1	0	0	0	0	1	0	0	0	17771	943	33	4	346	4	ZFP36	19	39898698	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	322707	39898698	19230285	2192	65181											
LGALS14	56891	broad.mit.edu	37	chr19	40195186	40195186	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaatgtcatcactacccgtGagttgaaaagtcacagcctt	7	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40195186	T	T	40195186	1	4	57	0	1	0	0	0	0	0	0	0	8813	1305	45	3		3	LGALS14	19	40195186	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	296488	40195186	18933797	2193	65182											
LGALS14	56891	broad.mit.edu	37	chr19	40200007	40200007	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctttctacctgaccatGggattcccagagcctactaa	6	15	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40200007	T	T	40200007	1	4	57	0	1	0	0	0	0	0	0	0	8813	1363	47	2		2	LGALS14	19	40200007	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4821	40200007	18928976	2194	65183											
ZNF780A	284323	broad.mit.edu	37	chr19	40581097	40581097	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcccacactccttacattCatatggttttataccagcat	3	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40581097	T	T	40581097	3	4	57	1	0	0	0	0	1	0	0	0	18281	835	29	4	804	4	ZNF780A	19	40581097	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	381090	40581097	18547886	2195	65184											
ADCK4	79934	broad.mit.edu	37	chr19	41211163	41211163	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagtatctgaagttgggGcctgttggtgggtagggctg	19	4	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41211163	A	A	41211163	1	1	57	0	1	0	0	0	0	0	0	0	290	1218	42	4		4	ADCK4	19	41211163	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	630066	41211163	17917820	2196	65185											
CYP2A6	1548	broad.mit.edu	37	chr19	41355621	41355621	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaagaccagactggggactCtgccttagcctccagttggc	13	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41355621	G	G	41355621	1	3	57	0	1	0	0	0	0	0	0	0	4195	928	32	4		4	CYP2A6	19	41355621	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	144458	41355621	17773362	2197	65186											
CCDC97	90324	broad.mit.edu	37	chr19	41828558	41828558	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgtggcacgggatgaggagGagaggtactttgatgaggaa	18	4	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41828558	T	T	41828558	4	4	57	1	0	0	0	0	0	1	0	0	2903	1175	41	3	988	3	CCDC97	19	41828558	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	472937	41828558	17300425	2198	65187											
BCKDHA	593	broad.mit.edu	37	chr19	41895497	41895497	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttcctaattaagcaagtCtgagctgggtttccagcact	8	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41895497	G	G	41895497	1	3	57	0	1	0	0	0	0	0	0	0	1364	928	32	4		4	BCKDHA	19	41895497	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	66939	41895497	17233486	2199	65188											
CYP2F1	1572	broad.mit.edu	37	chr19	42012140	42012140	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagcaggcagatgatgcaGaggagcgagctgagcgcctc	16	10	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42012140	A	A	42012140	1	1	57	0	1	0	0	0	0	0	0	0	4204	957	33	4		4	CYP2F1	19	42012140	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	116643	42012140	17116843	2200	65189											
CEACAM6	4680	broad.mit.edu	37	chr19	42260362	42260381	+	Intron	DEL	ACACACACACACACACACAC	-	-													gctgactttgactcagtaggAcacacacacacacacacaca					rs148766923		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42260381	-	-	42260362	6	5	57	0	1	1	0	1	0	0	0	0	3226	290	10	0		0	CEACAM6	19	42260362	Intron	DEL	ACACACACACACACACACAC	TCGA-17-Z026-01A-01W-0746-08	248222	42260362	16868621	2201	65190											
ATP1A3	478	broad.mit.edu	37	chr19	42492807	42492807	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccctccatgccccagctatCctcctggccggtgcccctgc	9	21	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42492807	T	T	42492807	1	4	57	0	1	0	0	0	0	0	0	0	1134	870	30	4		4	ATP1A3	19	42492807	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	232445	42492807	16636176	2202	65191											
GRIK5	2901	broad.mit.edu	37	chr19	42526491	42526491	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatggtgaaggcggccaCagccaggtctgccttctgct	14	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42526491	T	T	42526491	3	4	57	1	0	0	0	0	1	0	0	0	6843	478	17	4	1485	4	GRIK5	19	42526491	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	33684	42526491	16602492	2203	65192											
PSG1	5669	broad.mit.edu	37	chr19	43375847	43375847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattggacctgagagggacAgagaggcctggcctctggcc	16	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43375847	T	T	43375847	1	4	57	0	1	0	0	0	0	0	0	0	12759	203	7	5		5	PSG1	19	43375847	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	849356	43375847	15753136	2204	65193											
PSG6	5675	broad.mit.edu	37	chr19	43585056	43585056	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataaggtgaaggtgaaatatCcagttactcctctagtccca	8	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43585056	G	G	43585056	3	3	57	1	0	0	0	0	1	0	0	0	12765	855	30	4		4	PSG6	19	43585056	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	209209	43585056	15543927	2205	65194											
PHLDB3	653583	broad.mit.edu	37	chr19	44006031	44006031	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctccacctccatctgcggaGagaatgccagggctgggggc	14	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44006031	C	C	44006031	1	2	57	0	1	0	0	0	0	0	0	0	11948	957	33	4		4	PHLDB3	19	44006031	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	420975	44006031	15122952	2206	65195											
XRCC1	7515	broad.mit.edu	37	chr19	44057908	44057908	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcccaagacccttttcactCagggaaacctcttcctggct	8	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44057908	T	T	44057908	1	4	57	0	1	0	0	0	0	0	0	0	17579	841	29	4		4	XRCC1	19	44057908	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	51877	44057908	15071075	2207	65196											
C19orf61	56006	broad.mit.edu	37	chr19	44251649	44251649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaacttgatgctgtgcTtcatgcgctctgggggcagt	12	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44251649	A	A	44251649	3	1	57	1	0	0	0	0	1	0	0	0	1962	1609	56	5	1069	5	C19orf61	19	44251649	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	193741	44251649	14877334	2208	65197											
ZNF223	7766	broad.mit.edu	37	chr19	44570267	44570267	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccagaagcaggaccacatGaagggtggtcctgccagcag	13	11	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44570267	T	T	44570267	4	4	57	1	0	0	0	0	0	1	0	0	17903	1291	45	3	300	3	ZNF223	19	44570267	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	318618	44570267	14558716	2209	65198											
ZNF223	7766	broad.mit.edu	37	chr19	44570937	44570937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaccaaacagcactgGggaatatggaaaaggcttca	10	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44570937	T	T	44570937	3	4	57	1	0	0	0	0	1	0	0	0	17903	1232	43	2	970	2	ZNF223	19	44570937	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	670	44570937	14558046	2210	65199											
ZNF223	7766	broad.mit.edu	37	chr19	44571372	44571372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaagactgtgggaagcGctacaagaggcgcttgaatc	14	7	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44571372	T	T	44571372	3	4	57	1	0	0	0	0	1	0	0	0	17903	1087	38	3	1405	3	ZNF223	19	44571372	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	435	44571372	14557611	2211	65200											
GEMIN7	79760	broad.mit.edu	37	chr19	45593435	45593435	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccggggccctgatggcttCagccgtggctttgcccctga	13	16	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45593435	T	T	45593435	2	4	57	1	0	0	0	0	0	0	0	1	6397	825	29	4		4	GEMIN7	19	45593435	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1022063	45593435	13535548	2212	65201											
ZC3H4	23211	broad.mit.edu	37	chr19	47570648	47570648	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgtccttcttgatgtggctGaactgctgcagctgtgaccg	12	11	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47570648	A	A	47570648	2	1	57	1	0	0	0	0	0	0	0	1	17696	1281	45	4		4	ZC3H4	19	47570648	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1977213	47570648	11558335	2213	65202											
GPR77	27202	broad.mit.edu	37	chr19	47843941	47843941	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttatgacgcaatattccAgtttgcaaggtgctggtggg	12	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47843941	T	T	47843941	1	4	57	0	1	0	0	0	0	0	0	0	6774	203	7	5		5	GPR77	19	47843941	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	273293	47843941	11285042	2214	65203											
DHX34	9704	broad.mit.edu	37	chr19	47882911	47882911	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagccgggcagggcctgtctCcaatagcgccctgcccctcc	11	19	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47882911	G	G	47882911	1	3	57	0	1	0	0	0	0	0	0	0	4547	870	30	4		4	DHX34	19	47882911	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	38970	47882911	11246072	2215	65204											
GLTSCR2	29997	broad.mit.edu	37	chr19	48260032	48260032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcttcggcgcaaggaagGgagcccttctcccaccccgt	12	17	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48260032	T	T	48260032	1	4	57	0	1	0	0	0	0	0	0	0	6539	1247	43	2		2	GLTSCR2	19	48260032	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	377121	48260032	10868951	2216	65205											
CRX	1406	broad.mit.edu	37	chr19	48343346	48343346	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacccgaaccagctgtccttCtgacagctcggtgttcagct	9	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48343346	T	T	48343346	1	4	57	0	1	0	0	0	0	0	0	0	3934	928	32	4		4	CRX	19	48343346	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	83314	48343346	10785637	2217	65206											
CABP5	56344	broad.mit.edu	37	chr19	48533815	48533815	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagcttccaggacctcctCagcgagacatcatcttcaca	8	14	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48533815	T	T	48533815	2	4	57	1	0	0	0	0	0	0	0	1	2560	837	29	4		4	CABP5	19	48533815	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	190469	48533815	10595168	2218	65207											
LIG1	3978	broad.mit.edu	37	chr19	48638992	48638992	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagccacgtctttctggcctCtgctgtcttgcccttcccag	8	17	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48638992	T	T	48638992	3	4	57	1	0	0	0	0	1	0	0	0	8853	922	32	4	1343	4	LIG1	19	48638992	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	105177	48638992	10489991	2219	65208											
LIG1	3978	broad.mit.edu	37	chr19	48668715	48668715	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatctaacgtaagagttttTgtttgtttgtttgttttttt	7	2	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48668715	G	G	48668715	1	3	57	0	1	0	0	0	0	0	0	0	8853	1827	63	5		5	LIG1	19	48668715	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	29723	48668715	10460268	2220	65209											
GRIN2D	2906	broad.mit.edu	37	chr19	48925174	48925174	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctacaaccagccccgcgtaGaggaagcgctcactcagctc	10	16	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48925174	C	C	48925174	3	2	57	1	0	0	0	0	1	0	0	0	6848	943	33	4	2258	4	GRIN2D	19	48925174	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	256459	48925174	10203809	2221	65210											
PPFIA3	8541	broad.mit.edu	37	chr19	49632048	49632048	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctacctgtcaccctttttctCacatctgccccttttccctt	2	18	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49632048	T	T	49632048	1	4	57	0	1	0	0	0	0	0	0	0	12407	841	29	4		4	PPFIA3	19	49632048	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	706874	49632048	9496935	2222	65211											
TRPM4	54795	broad.mit.edu	37	chr19	49704027	49704027	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcttcgggcagattcccCaggaggacatggacggtagg	15	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49704027	T	T	49704027	4	4	57	1	0	0	0	0	0	1	0	0	16713	595	21	4	3012	4	TRPM4	19	49704027	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	71979	49704027	9424956	2223	65212											
CCDC155	147872	broad.mit.edu	37	chr19	49918189	49918189	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggacgaagccagcagTgactttgttggccctcaggt	14	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49918189	G	G	49918189	1	3	57	0	1	0	0	0	0	0	0	0	2815	1711	59	5		5	CCDC155	19	49918189	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	214162	49918189	9210794	2224	65213											
FCGRT	2217	broad.mit.edu	37	chr19	50027726	50027726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggctctgggagtggtgGgctcgcgacttaggcctgtc	16	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50027726	T	T	50027726	1	4	57	0	1	0	0	0	0	0	0	0	5843	1247	43	2		2	FCGRT	19	50027726	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	109537	50027726	9101257	2225	65214											
IL4I1	259307	broad.mit.edu	37	chr19	50399290	50399290	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctgaggaggatggggaCgaggacgaggaggtgcaggg	23	5	0	1	rs138247129		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50399290	T	T	50399290	3	4	57	1	0	0	0	0	1	0	0	0	7767	536	19	4	1693	4	IL4I1	19	50399290	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	371564	50399290	8729693	2226	65215											
KLK1	3816	broad.mit.edu	37	chr19	51325039	51325039	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccccacactggaaagtgctGaaatggtacagagccgcctg	11	13	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51325039	T	T	51325039	3	4	57	1	0	0	0	0	1	0	0	0	8468	1281	45	3	669	3	KLK1	19	51325039	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	925749	51325039	7803944	2227	65216											
KLK15	55554	broad.mit.edu	37	chr19	51329195	51329195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacagaccaggggtccccCagagtcaccctgtggggaaa	12	15	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51329195	A	A	51329195	3	1	57	1	0	0	0	0	1	0	0	0	8474	594	21	2	146	2	KLK15	19	51329195	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4156	51329195	7799788	2228	65217											
KLK4	9622	broad.mit.edu	37	chr19	51411879	51411879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacgaggcaagagttccccGcggtagggcactgcgaagca	14	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51411879	T	T	51411879	3	4	57	1	0	0	0	0	1	0	0	0	8477	1087	38	3	345	3	KLK4	19	51411879	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	82684	51411879	7717104	2229	65218											
KLK9	284366	broad.mit.edu	37	chr19	51506941	51506941	+	Intron	DEL	C	-	-													tggcaggacagcctcattttCcccagagtaaggtctcacct							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51506941	-	-	51506941	6	5	57	0	1	1	0	1	0	0	0	0	8482	870	30	0		0	KLK9	19	51506941	Intron	DEL	C	TCGA-17-Z026-01A-01W-0746-08	95062	51506941	7622042	2230	65219											
KLK9	284366	broad.mit.edu	37	chr19	51512620	51512620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggatgagggacaaagGggtcagcgaagagcaggctg	21	5	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51512620	T	T	51512620	1	4	57	0	1	0	0	0	0	0	0	0	8482	1247	43	2		2	KLK9	19	51512620	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5679	51512620	7616363	2231	65220											
SIGLEC9	27180	broad.mit.edu	37	chr19	51629227	51629227	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatctgggctggtggtgggGtcaggaggacactggctctg	19	7	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51629227	A	A	51629227	1	1	57	0	1	0	0	0	0	0	0	0	14428	1276	44	4		4	SIGLEC9	19	51629227	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	116607	51629227	7499756	2232	65221											
SIGLEC7	27036	broad.mit.edu	37	chr19	51647654	51647654	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgatcctgagtccccctctCttcaccagccttgacccaca	5	19	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51647654	T	T	51647654	1	4	57	0	1	0	0	0	0	0	0	0	14426	928	32	4		4	SIGLEC7	19	51647654	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	18427	51647654	7481329	2233	65222											
CD33	945	broad.mit.edu	37	chr19	51728954	51728954	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaggggtttaggggtaaAgcctgtcgtgcttagcgggg	20	5	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51728954	C	C	51728954	1	2	57	0	1	0	0	0	0	0	0	0	3035	87	3	5		5	CD33	19	51728954	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	81300	51728954	7400029	2234	65223											
NKG7	4818	broad.mit.edu	37	chr19	51875446	51875446	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcggtggttgagacaagCgggccgtggcctggggggaa	21	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51875446	A	A	51875446	2	1	57	1	0	0	0	0	0	0	0	1	10538	755	27	3		3	NKG7	19	51875446	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	146492	51875446	7253537	2235	65224											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918441	51918441	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcccccactcacagtgcaCggagaggctgagagagacgt	12	12	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51918441	T	T	51918441	3	4	57	1	0	0	0	0	1	0	0	0	14419	536	19	4	789	4	SIGLEC10	19	51918441	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	42995	51918441	7210542	2236	65225											
SIGLEC12	89858	broad.mit.edu	37	chr19	52004649	52004649	+	Missense_Mutation	SNP	C	G	G													acgtatgtccctgcatcactCtctctggtgtctctgatgct							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52004649	G	G	52004649	3	3	57	1	0	0	0	0	1	0	0	0	14421	912	32	4	1553	4	SIGLEC12	19	52004649	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	86208	52004649	7124334	2237	65226	301	2									
SIGLEC12	89858	broad.mit.edu	37	chr19	52004653	52004653	+	Missense_Mutation	SNP	C	T	T													atgtccctgcatcactctctCtggtgtctctgatgctcagg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52004653	T	T	52004653	3	4	57	1	0	0	0	0	1	0	0	0	14421	913	32	4	1557	4	SIGLEC12	19	52004653	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4	52004653	7124330	2238	65227	301	2									
SIGLEC5	8778	broad.mit.edu	37	chr19	52130480	52130480	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caagggctgcaggaaccactCctgtcccgaggttcgatctc	11	14	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52130480	G	G	52130480	3	3	57	1	0	0	0	0	1	0	0	0	14424	855	30	4	363	4	SIGLEC5	19	52130480	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	125827	52130480	6998503	2239	65228											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52147182	52147182	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgagggcttttccctcccGgaaccagctcagtgaggcag	12	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52147182	T	T	52147182	2	4	57	1	0	0	0	0	0	0	0	1	14422	1115	39	1		1	SIGLEC14	19	52147182	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	16702	52147182	6981801	2240	65229											
ZNF350	59348	broad.mit.edu	37	chr19	52468573	52468573	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctaaaggctttcccacatTcactacattcaaagggtttc	6	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52468573	A	A	52468573	3	1	57	1	0	0	0	0	1	0	0	0	17989	1783	62	5	469	5	ZNF350	19	52468573	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	321391	52468573	6660410	2241	65230											
ZNF350	59348	broad.mit.edu	37	chr19	52468935	52468935	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattcataaggtttttctccTgtatgagttcgctgatgttc	8	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52468935	A	A	52468935	2	1	57	1	0	0	0	0	0	0	0	1	17989	1567	55	5		5	ZNF350	19	52468935	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	362	52468935	6660048	2242	65231											
ZNF616	90317	broad.mit.edu	37	chr19	52618107	52618107	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgagtttagttgtaaggctCtctccagtatgtcttattcg	9	7	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52618107	A	A	52618107	3	1	57	1	0	0	0	0	1	0	0	0	18168	912	32	3	39	3	ZNF616	19	52618107	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	149172	52618107	6510876	2243	65232											
ZNF578	147660	broad.mit.edu	37	chr19	53014518	53014518	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgtaatgaatgtggaaagtCcttcagttacaagtcatccc	9	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53014518	G	G	53014518	3	3	57	1	0	0	0	0	1	0	0	0	18137	855	30	4	894	4	ZNF578	19	53014518	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	396411	53014518	6114465	2244	65233											
ZNF701	55762	broad.mit.edu	37	chr19	53079292	53079292	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggtgaggataacttccctCcagaagtggggatgtgccct	14	9	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53079292	T	T	53079292	1	4	57	0	1	0	0	0	0	0	0	0	18232	870	30	4		4	ZNF701	19	53079292	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	64774	53079292	6049691	2245	65234											
ZNF28	7576	broad.mit.edu	37	chr19	53302075	53302075	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaatggttgtagcattacTgaaaactttgtgacaatcat	8	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53302075	A	A	53302075	1	1	57	0	1	0	0	0	0	0	0	0	17939	1595	55	5		5	ZNF28	19	53302075	3'UTR	SNP	T	TCGA-17-Z026-01A-01W-0746-08	222783	53302075	5826908	2246	65235											
ZNF160	90338	broad.mit.edu	37	chr19	53571403	53571403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactctgcctgaagaccttgCcacactcattacatttgtaa	5	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53571403	A	A	53571403	3	1	57	1	0	0	0	0	1	0	0	0	17865	739	26	3	76	3	ZNF160	19	53571403	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	269328	53571403	5557580	2247	65236											
VN1R2	317701	broad.mit.edu	37	chr19	53762283	53762283	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaatatcctgtgctgggccTtccacatgctggtaaatgcc	9	13	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53762283	A	A	53762283	3	1	57	1	0	0	0	0	1	0	0	0	17306	1609	56	5	657	5	VN1R2	19	53762283	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	190880	53762283	5366700	2248	65237											
ZNF845	91664	broad.mit.edu	37	chr19	53844516	53844516	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctaaagactcttggtacgtGaggaagaaacccggaagagg	13	7	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53844516	A	A	53844516	1	1	57	0	1	0	0	0	0	0	0	0	18320	1305	45	4		4	ZNF845	19	53844516	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	82233	53844516	5284467	2249	65238											
ZNF761	388561	broad.mit.edu	37	chr19	53958156	53958156	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatgatcaaagtcatgctaGaaacaagcctattaaagatc	6	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53958156	C	C	53958156	3	2	57	1	0	0	0	0	1	0	0	0	18265	942	33	4	406	4	ZNF761	19	53958156	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	113640	53958156	5170827	2250	65239											
NLRP12	91662	broad.mit.edu	37	chr19	54313598	54313598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttgcatcagactcagcaGgtagagcatgtacactgcag	13	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54313598	T	T	54313598	3	4	57	1	0	0	0	0	1	0	0	0	10569	991	35	2	1998	2	NLRP12	19	54313598	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	355442	54313598	4815385	2251	65240											
NLRP12	91662	broad.mit.edu	37	chr19	54314121	54314121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgaagatgaggtcttgCatgctgcattccgtggcact	12	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54314121	A	A	54314121	3	1	57	1	0	0	0	0	1	0	0	0	10569	710	25	3	2521	3	NLRP12	19	54314121	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	523	54314121	4814862	2252	65241											
NLRP12	91662	broad.mit.edu	37	chr19	54314470	54314470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaggttgacacattccCctaggcgcgcattgcggtct	13	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54314470	A	A	54314470	3	1	57	1	0	0	0	0	1	0	0	0	10569	623	22	2	2870	2	NLRP12	19	54314470	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	349	54314470	4814513	2253	65242											
PRKCG	5582	broad.mit.edu	37	chr19	54387575	54387575	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggcgtccgtcccaatttctCctgctatttttatggctggg	10	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54387575	A	A	54387575	1	1	57	0	1	0	0	0	0	0	0	0	12618	870	30	3		3	PRKCG	19	54387575	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	73105	54387575	4741408	2254	65243											
CNOT3	4849	broad.mit.edu	37	chr19	54647370	54647370	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttcctgggtcctgaggtctGactttcttgcttttcccatc	9	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54647370	C	C	54647370	1	2	57	0	1	0	0	0	0	0	0	0	3652	1305	45	4		4	CNOT3	19	54647370	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	259795	54647370	4481613	2255	65244											
LENG1	79165	broad.mit.edu	37	chr19	54660561	54660561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcgactgccttcatcaCcgccgtgctgtctcttcttc	8	16	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54660561	A	A	54660561	3	1	57	1	0	0	0	0	1	0	0	0	8795	507	18	3	287	3	LENG1	19	54660561	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13191	54660561	4468422	2256	65245											
TSEN34	79042	broad.mit.edu	37	chr19	54695775	54695775	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggctgccaaagaggatgaGaccagtgatggccaggcttc	14	10	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54695775	C	C	54695775	3	2	57	1	0	0	0	0	1	0	0	0	16738	933	33	4	453	4	TSEN34	19	54695775	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	35214	54695775	4433208	2257	65246											
LILRB2	10288	broad.mit.edu	37	chr19	54783587	54783587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgagagggagacacccCtgagagcctccttcctgagg	14	12	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54783587	A	A	54783587	1	1	57	0	1	0	0	0	0	0	0	0	8863	696	24	2		2	LILRB2	19	54783587	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	87812	54783587	4345396	2258	65247											
LILRA3	11026	broad.mit.edu	37	chr19	54799936	54799936	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgttaaaggtgttgaataAttcttcaagttggaatgaat	9	2	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54799936	C	C	54799936	1	2	57	0	1	0	0	0	0	0	0	0	8858	116	4	5		5	LILRA3	19	54799936	3'UTR	SNP	A	TCGA-17-Z026-01A-01W-0746-08	16349	54799936	4329047	2259	65248											
LENG8	114823	broad.mit.edu	37	chr19	54966210	54966210	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagagctttggctccaacGcagagggccagcacagtggt	13	13	0	2	rs139748316		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54966210	C	C	54966210	3	2	57	1	0	0	0	0	1	0	0	0	8796	1087	38	4	782	4	LENG8	19	54966210	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	166274	54966210	4162773	2260	65249											
LENG8	114823	broad.mit.edu	37	chr19	54969198	54969198	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgagctggcctctgcGggcctccccagcccctttcc	12	17	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54969198	A	A	54969198	1	1	57	0	1	0	0	0	0	0	0	0	8796	1131	39	4		4	LENG8	19	54969198	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2988	54969198	4159785	2261	65250											
LILRA1	11024	broad.mit.edu	37	chr19	55106098	55106098	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatatgttgggtgggaaatGacttagaatctgaactctga	12	4	2	5			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55106098	C	C	55106098	1	2	57	0	1	0	0	0	0	0	0	0	8856	1305	45	4		4	LILRA1	19	55106098	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	136900	55106098	4022885	2262	65251											
LILRB4	11006	broad.mit.edu	37	chr19	55177262	55177262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctgatgtcatcacgccCaaggtctgagaaggcactgg	11	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55177262	A	A	55177262	1	1	57	0	1	0	0	0	0	0	0	0	8865	609	21	2		2	LILRB4	19	55177262	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	71164	55177262	3951721	2263	65252											
KIR2DL3	3804	broad.mit.edu	37	chr19	55264078	55264078	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccagctccaatgtaccaGcagctggaatctgaaggcgt	11	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55264078	T	T	55264078	1	4	57	0	1	0	0	0	0	0	0	0	8388	986	34	3		3	KIR2DL3	19	55264078	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	86816	55264078	3864905	2264	65253											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272229	55272229	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgatcctagagccttagctGaggagcttcctgctgaggat	12	9	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55272229	T	T	55272229	1	4	57	0	1	0	0	0	0	0	0	0	8388	1305	45	3		3	KIR2DL3	19	55272229	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	8151	55272229	3856754	2265	65254											
KIR3DL1	3811	broad.mit.edu	37	chr19	55330261	55330261	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccctggagcctgtgactaTttatgttacagggcagggga	13	8	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55330261	A	A	55330261	1	1	57	0	1	0	0	0	0	0	0	0	8391	1508	52	5		5	KIR3DL1	19	55330261	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	58032	55330261	3798722	2266	65255											
KIR3DL1	3811	broad.mit.edu	37	chr19	55351292	55351292	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagggagggatcagggcgcAggatggcacacacagcacct	16	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55351292	C	C	55351292	1	2	57	0	1	0	0	0	0	0	0	0	8391	203	7	5		5	KIR3DL1	19	55351292	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	21031	55351292	3777691	2267	65256											
KIR3DL1	3811	broad.mit.edu	37	chr19	55377285	55377285	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcagacacctgcatgttctGattgggacctcagtggtcat	11	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55377285	C	C	55377285	2	2	57	1	0	0	0	0	0	0	0	1	8391	1277	45	4		4	KIR3DL1	19	55377285	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	25993	55377285	3751698	2268	65257											
NCR1	9437	broad.mit.edu	37	chr19	55418211	55418211	+	Intron	SNP	C	A	A													gagtgatctcagtctgcatcCgggatgcagcatcatctatg							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55418211	A	A	55418211	1	1	57	0	1	0	0	0	0	0	0	0	10332	667	23	1		1	NCR1	19	55418211	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	40926	55418211	3710772	2269	65258	302	2									
NCR1	9437	broad.mit.edu	37	chr19	55418214	55418214	+	Intron	SNP	G	A	A													tgatctcagtctgcatccggGatgcagcatcatctatgaac							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55418214	A	A	55418214	1	1	57	0	1	0	0	0	0	0	0	0	10332	1189	41	4		4	NCR1	19	55418214	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3	55418214	3710769	2270	65259	302	2									
NLRP2	55655	broad.mit.edu	37	chr19	55489136	55489136	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagggataacacggaaagaAcgaccacctctagacgtgga	11	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55489136	C	C	55489136	3	2	57	1	0	0	0	0	1	0	0	0	10572	40	2	5	352	5	NLRP2	19	55489136	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	70922	55489136	3639847	2271	65260											
NLRP2	55655	broad.mit.edu	37	chr19	55512228	55512228	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atactgagaaacatcatcccTgggcagaaaggccttcttct	8	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55512228	A	A	55512228	3	1	57	1	0	0	0	0	1	0	0	0	10572	1580	55	5	3197	5	NLRP2	19	55512228	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	23092	55512228	3616755	2272	65261											
PPP1R12C	54776	broad.mit.edu	37	chr19	55624154	55624154	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccacctccaggttctcatCaatgcaggcctgggggtggg	13	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55624154	A	A	55624154	3	1	57	1	0	0	0	0	1	0	0	0	12457	826	29	3	2101	3	PPP1R12C	19	55624154	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	111926	55624154	3504829	2273	65262											
SAPS1	22870	broad.mit.edu	37	chr19	55748241	55748241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcccacagccccacacCcctccacccgccacaaccag	4	25	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55748241	A	A	55748241	1	1	57	0	1	0	0	0	0	0	0	0	13948	638	22	2		2	SAPS1	19	55748241	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	124087	55748241	3380742	2274	65263											
NLRP11	204801	broad.mit.edu	37	chr19	56307303	56307303	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaacccagagtattaaCccagacctactgaactccaa	5	14	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56307303	T	T	56307303	1	4	57	0	1	0	0	0	0	0	0	0	10568	522	18	4		4	NLRP11	19	56307303	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	559062	56307303	2821680	2275	65264											
NLRP11	204801	broad.mit.edu	37	chr19	56307653	56307653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgaaaagaggctcccgCgtttaagctatcccctcttt	8	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56307653	A	A	56307653	1	1	57	0	1	0	0	0	0	0	0	0	10568	783	27	3		3	NLRP11	19	56307653	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	350	56307653	2821330	2276	65265											
NLRP11	204801	broad.mit.edu	37	chr19	56321267	56321267	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actttcattgacatttaactCgaatcttatgttgtccaagt	5	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56321267	G	G	56321267	3	3	57	1	0	0	0	0	1	0	0	0	10568	893	31	4	2424	4	NLRP11	19	56321267	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13614	56321267	2807716	2277	65266											
NLRP4	147945	broad.mit.edu	37	chr19	56372974	56372974	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgacctattcatctcacctCtagctttcagtcgaggctaa	6	12	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56372974	T	T	56372974	1	4	57	0	1	0	0	0	0	0	0	0	10574	928	32	4		4	NLRP4	19	56372974	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	51707	56372974	2756009	2278	65267											
NLRP13	126204	broad.mit.edu	37	chr19	56424579	56424579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtattacggatatataCgtggtctttaggccaactga	10	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56424579	A	A	56424579	3	1	57	1	0	0	0	0	1	0	0	0	10570	536	19	3	2553	3	NLRP13	19	56424579	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	51605	56424579	2704404	2279	65268											
NLRP5	126206	broad.mit.edu	37	chr19	56539841	56539841	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagggatcttcccaagagatGagtccgctgaggcatgtcct	12	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56539841	A	A	56539841	3	1	57	1	0	0	0	0	1	0	0	0	10575	1291	45	4	2268	4	NLRP5	19	56539841	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	115262	56539841	2589142	2280	65269											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56832241	56832241	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccataatcctggacaagcttCatgtagagtgtggggttcca	11	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56832241	A	A	56832241	1	1	57	0	1	0	0	0	0	0	0	0	18367	841	29	3		3	ZSCAN5A	19	56832241	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	292400	56832241	2296742	2281	65270											
ZNF71	58491	broad.mit.edu	37	chr19	57133485	57133485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtgtgccccgagtgcgggcGagccttcagccagaacatgc	14	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57133485	T	T	57133485	3	4	57	1	0	0	0	0	1	0	0	0	18242	1058	37	3	832	3	ZNF71	19	57133485	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	301244	57133485	1995498	2282	65271											
ZIM2	23619	broad.mit.edu	37	chr19	57286238	57286238	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactctgccacagtcacaacActggcaggctctctctccaa	7	16	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57286238	T	T	57286238	3	4	57	1	0	0	0	0	1	0	0	0	17810	159	6	5	185	5	ZIM2	19	57286238	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	152753	57286238	1842745	2283	65272											
USP29	57663	broad.mit.edu	37	chr19	57640155	57640155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacaaaaggaaattaaaCtggtggtcactttcaaatct	7	6	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57640155	A	A	57640155	3	1	57	1	0	0	0	0	1	0	0	0	17186	564	20	3	114	3	USP29	19	57640155	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	353917	57640155	1488828	2284	65273											
DUXA	503835	broad.mit.edu	37	chr19	57669619	57669619	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccagcatgatgaggaactGcctgaggcccatgtggcttc	13	12	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57669619	A	A	57669619	1	1	57	0	1	0	0	0	0	0	0	0	4874	1334	46	4		4	DUXA	19	57669619	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	29464	57669619	1459364	2285	65274											
ZNF264	9422	broad.mit.edu	37	chr19	57716803	57716803	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagctgatctgccacctaGagcatgggcaggagccatgg	14	11	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57716803	C	C	57716803	3	2	57	1	0	0	0	0	1	0	0	0	17930	943	33	4	209	4	ZNF264	19	57716803	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	47184	57716803	1412180	2286	65275											
ZNF547	284306	broad.mit.edu	37	chr19	57889389	57889389	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaaagagttcacactggaGaacggccttatgaatgcagt	10	9	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57889389	A	A	57889389	3	1	57	1	0	0	0	0	1	0	0	0	18106	943	33	4	1055	4	ZNF547	19	57889389	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	172586	57889389	1239594	2287	65276											
ZNF17	7565	broad.mit.edu	37	chr19	57931936	57931936	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactggagaaaggcctttttAttgctgtgaatgtgggaaat	12	5	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57931936	C	C	57931936	3	2	57	1	0	0	0	0	1	0	0	0	17869	449	16	5	1086	5	ZNF17	19	57931936	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	42547	57931936	1197047	2288	65277											
ZIK1	284307	broad.mit.edu	37	chr19	58096344	58096344	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtctccagaaacacatAtggacctcacaaaggtgagt	9	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58096344	T	T	58096344	3	4	57	1	0	0	0	0	1	0	0	0	17809	449	16	5	64	5	ZIK1	19	58096344	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	164408	58096344	1032639	2289	65278											
ZNF587	84914	broad.mit.edu	37	chr19	58262132	58262132	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatggagtgtttgtggtttCatctgtcatcatcacggcag	11	7	5	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58262132	T	T	58262132	1	4	57	0	1	0	0	0	0	0	0	0	18147	841	29	4		4	ZNF587	19	58262132	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	165788	58262132	866851	2290	65279											
ZNF586	54807	broad.mit.edu	37	chr19	58290376	58290376	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcctacactccatattcatGagagatttcatactgggcaa	7	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58290376	A	A	58290376	3	1	57	1	0	0	0	0	1	0	0	0	18146	1291	45	4	431	4	ZNF586	19	58290376	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	28244	58290376	838607	2291	65280											
ZNF606	80095	broad.mit.edu	37	chr19	58490390	58490390	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcatgtttactaagggctGagtagtccctaaaagctttt	8	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58490390	C	C	58490390	4	2	57	1	0	0	0	0	0	1	0	0	18159	1294	45	4	724	4	ZNF606	19	58490390	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	200014	58490390	638593	2292	65281											
ZNF606	80095	broad.mit.edu	37	chr19	58499575	58499575	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctggggtctgccctcacCtggacaagtgcgttgaggac	14	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58499575	A	A	58499575	4	1	57	1	0	0	0	0	0	1	0	0	18159	695	24	2	1986	2	ZNF606	19	58499575	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	9185	58499575	629408	2293	65282											
ZSCAN1	284312	broad.mit.edu	37	chr19	58556386	58556386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctgtgtacagcgccccCgcagagatggtggtgaagtc	15	12	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58556386	A	A	58556386	1	1	57	0	1	0	0	0	0	0	0	0	18355	667	23	1		1	ZSCAN1	19	58556386	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	56811	58556386	572597	2294	65283											
ZSCAN1	284312	broad.mit.edu	37	chr19	58556725	58556725	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggagcttcaggtcaagctgGagctagccgagttcctccag	13	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58556725	C	C	58556725	1	2	57	0	1	0	0	0	0	0	0	0	18355	1189	41	4		4	ZSCAN1	19	58556725	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	339	58556725	572258	2295	65284											
ZSCAN1	284312	broad.mit.edu	37	chr19	58564016	58564016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagtctggctcctgtgtGgattaagggttggaaatgga	17	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58564016	T	T	58564016	1	4	57	0	1	0	0	0	0	0	0	0	18355	1363	47	2		2	ZSCAN1	19	58564016	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7291	58564016	564967	2296	65285											
ZNF324B	388569	broad.mit.edu	37	chr19	58967053	58967053	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgacctgggacgagctgggcGaggctcttcacgctggggag	18	11	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58967053	A	A	58967053	3	1	57	1	0	0	0	0	1	0	0	0	17971	1059	37	4	752	4	ZNF324B	19	58967053	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	403037	58967053	161930	2297	65286											
TGM3	7053	broad.mit.edu	37	chr20	2298208	2298208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaccatccttctgggacCcaggtccaaacaggtgttgc	9	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2298208	A	A	2298208	1	1	57	0	1	0	0	0	0	0	0	0	15954	638	22	2		2	TGM3	20	2298208	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08		2298208	60727312	2298	65287											
TGM6	343641	broad.mit.edu	37	chr20	2376132	2376132	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttccaaaagacatccttaGaggagagcctgcccttggag	10	10	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2376132	A	A	2376132	1	1	57	0	1	0	0	0	0	0	0	0	15957	957	33	4		4	TGM6	20	2376132	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	77924	2376132	60649388	2299	65288											
PRNP	5621	broad.mit.edu	37	chr20	4680497	4680497	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatgatggagcgcgtggttGagcagatgtgtatcacccag	15	7	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4680497	C	C	4680497	3	2	57	1	0	0	0	0	1	0	0	0	12650	1291	45	4	633	4	PRNP	20	4680497	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2304365	4680497	58345023	2300	65289											
PROKR2	128674	broad.mit.edu	37	chr20	5283425	5283425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagtaatgatgaatacgtGgaaacgttagtttgtaacta	10	3	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5283425	T	T	5283425	1	4	57	0	1	0	0	0	0	0	0	0	12659	1363	47	2		2	PROKR2	20	5283425	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	602928	5283425	57742095	2301	65290											
C20orf103	24141	broad.mit.edu	37	chr20	9496897	9496897	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaagcgcacctccccggctCaacaggaaagccacaacatg	9	15	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9496897	T	T	9496897	1	4	57	0	1	0	0	0	0	0	0	0	2097	841	29	4		4	C20orf103	20	9496897	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4213472	9496897	53528623	2302	65291											
SLC24A3	57419	broad.mit.edu	37	chr20	19702038	19702038	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatccacgtgacttttccaGctccatttttgaacagtgac	6	12	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19702038	A	A	19702038	1	1	57	0	1	0	0	0	0	0	0	0	14581	986	34	4		4	SLC24A3	20	19702038	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	10205141	19702038	43323482	2303	65292											
RALGAPA2	57186	broad.mit.edu	37	chr20	20447416	20447416	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggccaaccgaaatcctcaGacattgttcacaatgactgc	8	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20447416	C	C	20447416	1	2	57	0	1	0	0	0	0	0	0	0	13122	957	33	4		4	RALGAPA2	20	20447416	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	745378	20447416	42578104	2304	65293											
CST8	10047	broad.mit.edu	37	chr20	23473696	23473696	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccattcaagaaaactcCaagctgaaaagggtaggtga	11	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23473696	A	A	23473696	2	1	57	1	0	0	0	0	0	0	0	1	4012	581	21	2		2	CST8	20	23473696	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3026280	23473696	39551824	2305	65294											
ZNF337	26152	broad.mit.edu	37	chr20	25656823	25656823	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctcccctgagtgtgtcctCtggtgtgtgataaggtgtga	13	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25656823	T	T	25656823	2	4	57	1	0	0	0	0	0	0	0	1	17979	912	32	4		4	ZNF337	20	25656823	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2183127	25656823	37368697	2306	65295											
DEFB119	245932	broad.mit.edu	37	chr20	29965004	29965004	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgaggggggttgacagCaggtctctgtgcccagagag	16	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29965004	T	T	29965004	1	4	57	0	1	0	0	0	0	0	0	0	4446	725	25	4		4	DEFB119	20	29965004	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4308181	29965004	33060516	2307	65296											
DEFB119	245932	broad.mit.edu	37	chr20	29965936	29965936	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatgtgggaagcctcgacTtcccctatctggtgggaaga	12	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29965936	G	G	29965936	1	3	57	0	1	0	0	0	0	0	0	0	4446	1624	56	5		5	DEFB119	20	29965936	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	932	29965936	33059584	2308	65297											
DEFB121	245934	broad.mit.edu	37	chr20	29992975	29992975	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggctaaagcccagtagagGagtaggagggaaatgaggag	18	4	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29992975	C	C	29992975	1	2	57	0	1	0	0	0	0	0	0	0	4447	1189	41	4		4	DEFB121	20	29992975	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	27039	29992975	33032545	2309	65298											
HM13	81502	broad.mit.edu	37	chr20	30135772	30135772	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatgtctgcagaagatattGagaaagtcaacaaaggaatt	10	4	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30135772	C	C	30135772	1	2	57	0	1	0	0	0	0	0	0	0	7284	1305	45	4		4	HM13	20	30135772	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	142797	30135772	32889748	2310	65299											
HM13	81502	broad.mit.edu	37	chr20	30142619	30142619	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatgctgggacttggagaTgtcgtcattccaggtgagcc	14	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30142619	C	C	30142619	2	2	57	1	0	0	0	0	0	0	0	1	7284	1461	51	5		5	HM13	20	30142619	Silent	SNP	T	TCGA-17-Z026-01A-01W-0746-08	6847	30142619	32882901	2311	65300											
TPX2	22974	broad.mit.edu	37	chr20	30366577	30366577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtagatgtgagctcttcCgtgacatttcatttggggaa	12	6	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30366577	A	A	30366577	1	1	57	0	1	0	0	0	0	0	0	0	16556	667	23	1		1	TPX2	20	30366577	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	223958	30366577	32658943	2312	65301											
DUSP15	128853	broad.mit.edu	37	chr20	30439421	30439421	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagcgggtgggagcatgggGacagggctggagctggtgct	23	6	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30439421	T	T	30439421	1	4	57	0	1	0	0	0	0	0	0	0	4855	1189	41	3		3	DUSP15	20	30439421	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	72844	30439421	32586099	2313	65302											
TTLL9	164395	broad.mit.edu	37	chr20	30521613	30521613	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctctcccagatgttcacctCaccaacgtggctgtgcaaaa	7	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30521613	T	T	30521613	2	4	57	1	0	0	0	0	0	0	0	1	16860	813	29	4		4	TTLL9	20	30521613	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	82192	30521613	32503907	2314	65303											
C20orf160	140706	broad.mit.edu	37	chr20	30617580	30617580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccggctggggctgcccatCcaggactattgcacaggcct	12	14	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30617580	A	A	30617580	3	1	57	1	0	0	0	0	1	0	0	0	2115	855	30	3	1307	3	C20orf160	20	30617580	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	95967	30617580	32407940	2315	65304											
TM9SF4	9777	broad.mit.edu	37	chr20	30729322	30729322	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggtgctgagaggggaccgGattgtcaacacccctttcca	13	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30729322	A	A	30729322	2	1	57	1	0	0	0	0	0	0	0	1	16103	1161	41	4		4	TM9SF4	20	30729322	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	111742	30729322	32296198	2316	65305											
POFUT1	23509	broad.mit.edu	37	chr20	30816238	30816238	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccctatgtgggcattcatCtgcgcattggctctgactgg	13	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30816238	G	G	30816238	3	3	57	1	0	0	0	0	1	0	0	0	12278	912	32	4	780	4	POFUT1	20	30816238	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	86916	30816238	32209282	2317	65306											
C20orf112	140688	broad.mit.edu	37	chr20	31044011	31044011	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggaggctgtgccaagtgcCgtggccggcgggagcttgtc	18	10	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31044011	T	T	31044011	2	4	57	1	0	0	0	0	0	0	0	1	2103	639	23	4		4	C20orf112	20	31044011	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	227773	31044011	31981509	2318	65307											
BPIL1	80341	broad.mit.edu	37	chr20	31604874	31604874	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcatctccaacctggtGcagggtgtcaatgtccacct	10	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31604874	A	A	31604874	2	1	57	1	0	0	0	0	0	0	0	1	1500	1306	46	4		4	BPIL1	20	31604874	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	560863	31604874	31420646	2319	65308											
C20orf114	92747	broad.mit.edu	37	chr20	31889241	31889241	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacctcagcacaaggcagaGaatagggccgcccaggccac	11	14	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31889241	C	C	31889241	1	2	57	0	1	0	0	0	0	0	0	0	2104	957	33	4		4	C20orf114	20	31889241	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	284367	31889241	31136279	2320	65309											
ITCH	83737	broad.mit.edu	37	chr20	32981421	32981421	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggggatgaacagccAtgtcagattttgccaataag	14	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32981421	T	T	32981421	1	4	57	0	1	0	0	0	0	0	0	0	7938	232	8	5		5	ITCH	20	32981421	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1092180	32981421	30044099	2321	65310											
ITCH	83737	broad.mit.edu	37	chr20	33033185	33033185	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggccaacactggaatccgtCcggaactatgaacaatggca	10	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33033185	G	G	33033185	2	3	57	1	0	0	0	0	0	0	0	1	7938	842	30	4		4	ITCH	20	33033185	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	51764	33033185	29992335	2322	65311											
EIF6	3692	broad.mit.edu	37	chr20	33866920	33866920	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccacctccctgccagcatCcggtacagattgggcggaat	11	14	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33866920	G	G	33866920	1	3	57	0	1	0	0	0	0	0	0	0	5087	870	30	4		4	EIF6	20	33866920	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	833735	33866920	29158600	2323	65312											
EPB41L1	2036	broad.mit.edu	37	chr20	34807691	34807691	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatattctgcagatcatcggGaaagatgtcctcaccagcac	8	11	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34807691	A	A	34807691	2	1	57	1	0	0	0	0	0	0	0	1	5194	1161	41	4		4	EPB41L1	20	34807691	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	940771	34807691	28217829	2324	65313											
C20orf132	140699	broad.mit.edu	37	chr20	35748039	35748040	+	Intron	INS	-	AAAGA	AAAGA													agagggacagaaagaaagagINSaaagaaaagaaaagaaaaga					rs138010782	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAAGA	35748040	AAAGA	AAAGA	35748039	6	5	57	0	1	1	1	0	0	0	0	0	2108	957	33	0		0	C20orf132	20	35748039	Intron	INS	-	TCGA-17-Z026-01A-01W-0746-08	940348	35748039	27277481	2325	65314											
CTNNBL1	56259	broad.mit.edu	37	chr20	36407683	36407683	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctaatgcttagttccaAtcgtgagcgcttcctgaagg	10	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36407683	T	T	36407683	3	4	57	1	0	0	0	0	1	0	0	0	4052	101	4	5	1015	5	CTNNBL1	20	36407683	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	659644	36407683	26617837	2326	65315											
KIAA0406	9675	broad.mit.edu	37	chr20	36631042	36631042	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgaccttcaggcggatTtgcagatttttatctgacaa	9	9	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36631042	G	G	36631042	3	3	57	1	0	0	0	0	1	0	0	0	8243	1838	64	5	649	5	KIAA0406	20	36631042	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	223359	36631042	26394478	2327	65316											
LBP	3929	broad.mit.edu	37	chr20	36995371	36995371	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctttagaccttcagctccAgcgggagcaccctaaaactt	7	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36995371	T	T	36995371	1	4	57	0	1	0	0	0	0	0	0	0	8723	203	7	5		5	LBP	20	36995371	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	364329	36995371	26030149	2328	65317											
DHX35	60625	broad.mit.edu	37	chr20	37634778	37634778	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttttattcttctttctgtGgggaacgtaggtgatagtgg	13	4	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37634778	T	T	37634778	1	4	57	0	1	0	0	0	0	0	0	0	4548	1363	47	2		2	DHX35	20	37634778	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	639407	37634778	25390742	2329	65318											
PTPRT	11122	broad.mit.edu	37	chr20	40864877	40864877	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgatacttacaagtaataGgagtaggaataagcatttct	8	6	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40864877	A	A	40864877	2	1	57	1	0	0	0	0	0	0	0	1	12920	987	35	4		4	PTPRT	20	40864877	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3230099	40864877	22160643	2330	65319											
PTPRT	11122	broad.mit.edu	37	chr20	40877404	40877404	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgatcacgccagccatcttCacggtgttgtccacctgctt	9	15	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40877404	T	T	40877404	2	4	57	1	0	0	0	0	0	0	0	1	12920	813	29	4		4	PTPRT	20	40877404	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	12527	40877404	22148116	2331	65320											
PTPRT	11122	broad.mit.edu	37	chr20	40979255	40979255	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgcagactccaagtgaaGaaccatcctcacctgacagg	8	13	1	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40979255	T	T	40979255	1	4	57	0	1	0	0	0	0	0	0	0	12920	957	33	3		3	PTPRT	20	40979255	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	101851	40979255	22046265	2332	65321											
PTPRT	11122	broad.mit.edu	37	chr20	41090812	41090812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgaatggtttcagttcCtcagtctattaggtaacaag	8	7	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41090812	A	A	41090812	1	1	57	0	1	0	0	0	0	0	0	0	12920	696	24	2		2	PTPRT	20	41090812	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	111557	41090812	21934708	2333	65322											
PTPRT	11122	broad.mit.edu	37	chr20	41630772	41630772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcactttctccttcctgCtgccttgtgaagaaggtgcc	9	13	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41630772	A	A	41630772	1	1	57	0	1	0	0	0	0	0	0	0	12920	812	28	3		3	PTPRT	20	41630772	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	539960	41630772	21394748	2334	65323											
STK4	6789	broad.mit.edu	37	chr20	43629042	43629042	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttcttttagcacccatttGtcaggagtgccaaaggagtg	11	8	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43629042	A	A	43629042	3	1	57	1	0	0	0	0	1	0	0	0	15424	1377	48	4	871	4	STK4	20	43629042	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1998270	43629042	19396478	2335	65324											
RBPJL	11317	broad.mit.edu	37	chr20	43940738	43940738	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccttaaggccgagcctgaGagcctggatggtggagcttc	15	10	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43940738	C	C	43940738	1	2	57	0	1	0	0	0	0	0	0	0	13270	957	33	4		4	RBPJL	20	43940738	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	311696	43940738	19084782	2336	65325											
WFDC3	140686	broad.mit.edu	37	chr20	44417687	44417687	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcttatggggagggcattCtccctcttttgctgcaaaag	11	9	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44417687	G	G	44417687	3	3	57	1	0	0	0	0	1	0	0	0	17480	922	32	4	621	4	WFDC3	20	44417687	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	476949	44417687	18607833	2337	65326											
CTSA	5476	broad.mit.edu	37	chr20	44520906	44520906	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tactcagccatctctttcctCctcaggtccagccagatggt	7	15	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44520906	T	T	44520906	1	4	57	0	1	0	0	0	0	0	0	0	4063	870	30	4		4	CTSA	20	44520906	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	103219	44520906	18504614	2338	65327											
EYA2	2139	broad.mit.edu	37	chr20	45702929	45702929	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgtccacctacgtcctccagGaggcatctcacaacgtcccc	7	19	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45702929	C	C	45702929	3	2	57	1	0	0	0	0	1	0	0	0	5372	1175	41	4	638	4	EYA2	20	45702929	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1182023	45702929	17322591	2339	65328											
EYA2	2139	broad.mit.edu	37	chr20	45797732	45797732	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaacccttgaaggctacatCagattaaccaggcatgttct	7	12	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45797732	G	G	45797732	1	3	57	0	1	0	0	0	0	0	0	0	5372	841	29	4		4	EYA2	20	45797732	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	94803	45797732	17227788	2340	65329											
ATP9A	10079	broad.mit.edu	37	chr20	50287514	50287514	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcttcatcaccaaagaatCttcatcaaaagatgaaggga	6	9	6	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50287514	T	T	50287514	1	4	57	0	1	0	0	0	0	0	0	0	1202	928	32	4		4	ATP9A	20	50287514	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4489782	50287514	12738006	2341	65330											
TSHZ2	128553	broad.mit.edu	37	chr20	51610470	51610470	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtgaggatgtgagctGgaaaccttgctgggctgaag	19	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51610470	C	C	51610470	1	2	57	0	1	0	0	0	0	0	0	0	16749	1363	47	4		4	TSHZ2	20	51610470	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1322956	51610470	11415050	2342	65331											
MC3R	4159	broad.mit.edu	37	chr20	54824869	54824869	+	Nonstop_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacggcatgaacttgggaTaggatgcagggccatggaaa	15	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54824869	C	C	54824869	4	2	57	1	0	0	0	0	0	0	0	0	9458	1419	49	5	972	5	MC3R	20	54824869	Nonstop_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	3214399	54824869	8200651	2343	65332											
TUBB1	81027	broad.mit.edu	37	chr20	57594520	57594520	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaccagtgaaccgaagctCtggattctgagagtctgagg	12	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57594520	T	T	57594520	1	4	57	0	1	0	0	0	0	0	0	0	16879	928	32	4		4	TUBB1	20	57594520	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2769651	57594520	5431000	2344	65333											
ZNF831	128611	broad.mit.edu	37	chr20	57828923	57828923	+	Intron	DEL	A	-	-													accaattaacctccccccccActttttttttcctttgcact					rs68185615		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57828923	-	-	57828923	6	5	57	0	1	1	0	1	0	0	0	0	18314	174	6	0		0	ZNF831	20	57828923	Intron	DEL	A	TCGA-17-Z026-01A-01W-0746-08	234403	57828923	5196597	2345	65334											
ZNF831	128611	broad.mit.edu	37	chr20	57829709	57829709	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctaaatccctcaagaagAggagtctggaaggaatgaga	11	7	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57829709	T	T	57829709	3	4	57	1	0	0	0	0	1	0	0	0	18314	295	11	5	4963	5	ZNF831	20	57829709	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	786	57829709	5195811	2346	65335											
SYCP2	10388	broad.mit.edu	37	chr20	58461892	58461892	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccttttgacttttctctctGaaaaaaattgtaagttactt	4	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58461892	A	A	58461892	1	1	57	0	1	0	0	0	0	0	0	0	15551	1305	45	4		4	SYCP2	20	58461892	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	632183	58461892	4563628	2347	65336											
KCNQ2	3785	broad.mit.edu	37	chr20	62046308	62046308	+	Silent	SNP	C	T	T													atgcggaaagcctggcgtgcCcggctgcggtccccgaagct							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62046308	T	T	62046308	2	4	57	1	0	0	0	0	0	0	0	1	8153	610	22	4		4	KCNQ2	20	62046308	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3584416	62046308	979212	2348	65337	303	2									
KCNQ2	3785	broad.mit.edu	37	chr20	62046310	62046310	+	Silent	SNP	G	T	T													gcggaaagcctggcgtgcccGgctgcggtccccgaagctcc							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62046310	T	T	62046310	2	4	57	1	0	0	0	0	0	0	0	1	8153	1115	39	1		1	KCNQ2	20	62046310	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2	62046310	979210	2349	65338	303	2									
GMEB2	26205	broad.mit.edu	37	chr20	62223858	62223858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactcctgggctgagtagcCagcaagagggaagatgcagc	15	9	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62223858	A	A	62223858	1	1	57	0	1	0	0	0	0	0	0	0	6552	609	21	2		2	GMEB2	20	62223858	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	177548	62223858	801662	2350	65339											
TCEA2	6919	broad.mit.edu	37	chr20	62703589	62703589	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccggcccacgtcctccgttGacacagcttctctggagacc	9	18	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62703589	C	C	62703589	1	2	57	0	1	0	0	0	0	0	0	0	15790	1305	45	4		4	TCEA2	20	62703589	3'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	479731	62703589	321931	2351	65340											
MYT1	4661	broad.mit.edu	37	chr20	62836860	62836860	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atggggtgtctgaggcctctCgtggccctagcctggtcctc	14	13	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62836860	G	G	62836860	1	3	57	0	1	0	0	0	0	0	0	0	10200	899	31	4		4	MYT1	20	62836860	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	133271	62836860	188660	2352	65341											
PCMTD2	55251	broad.mit.edu	37	chr20	62904848	62904848	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagagaagaccccgccGgaaacaaagccagacccccc	10	15	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62904848	T	T	62904848	2	4	57	1	0	0	0	0	0	0	0	1	11681	1103	39	1		1	PCMTD2	20	62904848	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	67988	62904848	120672	2353	65342											
TPTE	7179	broad.mit.edu	37	chr21	10970463	10970463	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcatggtggtttctcatgTcccacaaaaagggtcaggta	11	9	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10970463	C	C	10970463	1	2	57	0	1	0	0	0	0	0	0	0	16554	1682	58	5		5	TPTE	21	10970463	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08		10970463	37159432	2354	65343											
TPTE	7179	broad.mit.edu	37	chr21	10971897	10971897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttctttgttttggctgGgatttctctgatctttgtcc	9	8	4	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971897	T	T	10971897	1	4	57	0	1	0	0	0	0	0	0	0	16554	1247	43	2		2	TPTE	21	10971897	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1434	10971897	37157998	2355	65344											
BAGE2	85319	broad.mit.edu	37	chr21	11021629	11021629	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatacagcacataattAcatattacatgttgaaatgg	5	5	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11021629	G	G	11021629	1	3	57	0	1	0	0	0	0	0	0	0	1297	406	14	5		5	BAGE2	21	11021629	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	49732	11021629	37108266	2356	65345											
BAGE2	85319	broad.mit.edu	37	chr21	11022802	11022802	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtttgtttttgagacaGtctctccctatgtcacccag	7	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11022802	A	A	11022802	1	1	57	0	1	0	0	0	0	0	0	0	1297	1044	36	4		4	BAGE2	21	11022802	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1173	11022802	37107093	2357	65346											
BAGE2	85319	broad.mit.edu	37	chr21	11028375	11028375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacaacggacggatgggGtcaggttagttttttgggtt	15	5	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11028375	T	T	11028375	1	4	57	0	1	0	0	0	0	0	0	0	1297	1276	44	3		3	BAGE2	21	11028375	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5573	11028375	37101520	2358	65347											
BAGE2	85319	broad.mit.edu	37	chr21	11069457	11069457	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaaaagtatacagacacTttttaagaaactgtgaaact	7	5	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11069457	C	C	11069457	1	2	57	0	1	0	0	0	0	0	0	0	1297	1624	56	5		5	BAGE2	21	11069457	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	41082	11069457	37060438	2359	65348											
USP25	29761	broad.mit.edu	37	chr21	17214816	17214816	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaataattaccaaggcatCacatgagcatgaagataaaa	6	7	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17214816	G	G	17214816	4	3	57	1	0	0	0	0	0	1	0	0	17182	838	29	4	2364	4	USP25	21	17214816	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	6145359	17214816	30915079	2360	65349											
JAM2	58494	broad.mit.edu	37	chr21	27071166	27071166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaccaacagctcatacaCaatgaatacaaaaactggaa	5	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27071166	A	A	27071166	3	1	57	1	0	0	0	0	1	0	0	0	8013	478	17	3	590	3	JAM2	21	27071166	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	9856350	27071166	21058729	2361	65350											
ADAMTS5	11096	broad.mit.edu	37	chr21	28306902	28306902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagacagaccatctggccCtggcgtaccacagcacacca	9	16	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28306902	A	A	28306902	3	1	57	1	0	0	0	0	1	0	0	0	269	680	24	2	1240	2	ADAMTS5	21	28306902	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1235736	28306902	19822993	2362	65351											
GRIK1	2897	broad.mit.edu	37	chr21	30961209	30961209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactcccctttgtcattctGggccccatatttgccatcgg	7	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30961209	T	T	30961209	3	4	57	1	0	0	0	0	1	0	0	0	6839	1357	47	2	1425	2	GRIK1	21	30961209	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2654307	30961209	17168686	2363	65352											
CLDN17	26285	broad.mit.edu	37	chr21	31538603	31538603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtatgctttggccctctcGttagagcctgtgcactggac	12	11	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31538603	T	T	31538603	3	4	57	1	0	0	0	0	1	0	0	0	3509	1136	40	3	345	3	CLDN17	21	31538603	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	577394	31538603	16591292	2364	65353											
KRTAP27-1	643812	broad.mit.edu	37	chr21	31709560	31709560	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttagacttagaagtcttggGtgggcaactgtttcccttga	11	7	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31709560	A	A	31709560	3	1	57	1	0	0	0	0	1	0	0	0	8616	1261	44	4	200	4	KRTAP27-1	21	31709560	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	170957	31709560	16420335	2365	65354											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744596	31744596	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagtttgaatgtcataGtctggactccaagttatata	8	7	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31744596	T	T	31744596	1	4	57	0	1	0	0	0	0	0	0	0	8594	1044	36	3		3	KRTAP13-2	21	31744596	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	35036	31744596	16385299	2366	65355											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31798064	31798064	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctccagcaggtctcctgaCagcccctatagagagaggaa	11	13	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31798064	G	G	31798064	3	3	57	1	0	0	0	0	1	0	0	0	8595	478	17	4	355	4	KRTAP13-3	21	31798064	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	53468	31798064	16331831	2367	65356											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31798155	31798155	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggggtaggaagagccacAggaggagcctgggtagtgca	19	7	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31798155	T	T	31798155	3	4	57	1	0	0	0	0	1	0	0	0	8595	188	7	5	446	5	KRTAP13-3	21	31798155	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	91	31798155	16331740	2368	65357											
KRTAP22-1	337979	broad.mit.edu	37	chr21	31973527	31973527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggtcttagcggctatGgctatgcctgctactgccca	12	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31973527	T	T	31973527	3	4	57	1	0	0	0	0	1	0	0	0	8611	1348	47	2	90	2	KRTAP22-1	21	31973527	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	175372	31973527	16156368	2369	65358											
IFNAR2	3455	broad.mit.edu	37	chr21	34632984	34632984	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagcaccatagtgacactGaaatggattggttatatatg	9	6	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34632984	T	T	34632984	2	4	57	1	0	0	0	0	0	0	0	1	7615	1277	45	3		3	IFNAR2	21	34632984	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2659457	34632984	13496911	2370	65359											
GART	2618	broad.mit.edu	37	chr21	34900352	34900352	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaacatggttaagaccctCtgaaaggtttctgatggctt	10	8	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34900352	G	G	34900352	1	3	57	0	1	0	0	0	0	0	0	0	6305	928	32	4		4	GART	21	34900352	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	267368	34900352	13229543	2371	65360											
ITSN1	6453	broad.mit.edu	37	chr21	35147373	35147373	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaacaaatctagagagttGagaattgccgaaatcaccca	7	9	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35147373	A	A	35147373	2	1	57	1	0	0	0	0	0	0	0	1	7996	1281	45	4		4	ITSN1	21	35147373	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	247021	35147373	12982522	2372	65361											
RUNX1	861	broad.mit.edu	37	chr21	36466706	36466706	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatactcttacctttagTgtaatgcataacccacataa	4	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36466706	G	G	36466706	1	3	57	0	1	0	0	0	0	0	0	0	13857	1711	59	5		5	RUNX1	21	36466706	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1319333	36466706	11663189	2373	65362											
DOPEY2	9980	broad.mit.edu	37	chr21	37541464	37541464	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagcactcgcttcttggttCccaccacacagcctttcagc	7	16	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37541464	T	T	37541464	1	4	57	0	1	0	0	0	0	0	0	0	4748	870	30	4		4	DOPEY2	21	37541464	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1074758	37541464	10588431	2374	65363											
DOPEY2	9980	broad.mit.edu	37	chr21	37649349	37649349	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcttcagcaatggtgtcttCatccgccccgtcggtgtaca	10	13	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37649349	T	T	37649349	3	4	57	1	0	0	0	0	1	0	0	0	4748	838	29	4	5769	4	DOPEY2	21	37649349	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	107885	37649349	10480546	2375	65364											
MORC3	23515	broad.mit.edu	37	chr21	37710287	37710287	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagctgtggagaaactgaaGaaataatttggaaacattct	9	4	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37710287	A	A	37710287	1	1	57	0	1	0	0	0	0	0	0	0	9797	957	33	4		4	MORC3	21	37710287	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	60938	37710287	10419608	2376	65365											
TTC3	7267	broad.mit.edu	37	chr21	38498419	38498419	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtagatgattgtgactgtCatcctgaattttcaccacca	8	9	2	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38498419	T	T	38498419	3	4	57	1	0	0	0	0	1	0	0	0	16823	826	29	4	1327	4	TTC3	21	38498419	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	788132	38498419	9631476	2377	65366											
DSCAM	1826	broad.mit.edu	37	chr21	42064613	42064613	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttacttacaaaatagcatCagccttaagaatactaattc	4	8	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42064613	T	T	42064613	1	4	57	0	1	0	0	0	0	0	0	0	4808	841	29	4		4	DSCAM	21	42064613	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3566194	42064613	6065282	2378	65367											
BACE2	25825	broad.mit.edu	37	chr21	42613778	42613778	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggagaccttcttcgactcCctggtgacacaagcaaacat	8	13	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42613778	G	G	42613778	2	3	57	1	0	0	0	0	0	0	0	1	1287	610	22	4		4	BACE2	21	42613778	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	549165	42613778	5516117	2379	65368											
ZNF295	49854	broad.mit.edu	37	chr21	43433248	43433248	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttctcagctgtatctagGgttggtgctccctcctctgt	9	12	4	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43433248	T	T	43433248	1	4	57	0	1	0	0	0	0	0	0	0	17953	1247	43	2		2	ZNF295	21	43433248	5'Flank	SNP	G	TCGA-17-Z026-01A-01W-0746-08	819470	43433248	4696647	2380	65369											
SLC37A1	54020	broad.mit.edu	37	chr21	43963358	43963358	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgggtgatggcacagcctGaggccacataaacacatcag	11	10	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43963358	C	C	43963358	1	2	57	0	1	0	0	0	0	0	0	0	14711	1305	45	4		4	SLC37A1	21	43963358	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	530110	43963358	4166537	2381	65370											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45994356	45994356	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagactgtctgctgcaagCctgtgtgctctgaggattcc	12	11	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45994356	T	T	45994356	3	4	57	1	0	0	0	0	1	0	0	0	8582	739	26	4	723	4	KRTAP10-4	21	45994356	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2030998	45994356	2135539	2382	65371											
LSS	4047	broad.mit.edu	37	chr21	47647500	47647500	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgggccaccataatcaccCgtccagtgcccatcctcagc	8	17	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47647500	G	G	47647500	2	3	57	1	0	0	0	0	0	0	0	1	9152	639	23	4		4	LSS	21	47647500	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1653144	47647500	482395	2383	65372											
MCM3AP	8888	broad.mit.edu	37	chr21	47660846	47660846	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcccctcttgagcacactCtgtgctcctcttccagttac	5	18	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47660846	A	A	47660846	4	1	57	1	0	0	0	0	0	1	0	0	9481	922	32	3	442	3	MCM3AP	21	47660846	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	13346	47660846	469049	2384	65373											
POTEH	23784	broad.mit.edu	37	chr22	16287123	16287123	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctgtgccctgaactctctGaggtttccacatccagggtg	11	13	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16287123	C	C	16287123	1	2	57	0	1	0	0	0	0	0	0	0	12363	1305	45	4		4	POTEH	22	16287123	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08		16287123	35017443	2385	65374											
CCT8L2	150160	broad.mit.edu	37	chr22	17076294	17076294	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccattttttgcaaagctatTtcctcctagctccttcatgt	4	13	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17076294	G	G	17076294	1	3	57	0	1	0	0	0	0	0	0	0	2991	1856	64	5		5	CCT8L2	22	17076294	5'Flank	SNP	T	TCGA-17-Z026-01A-01W-0746-08	789171	17076294	34228272	2386	65375											
XKR3	150165	broad.mit.edu	37	chr22	17280689	17280689	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaggccattctcgtatagtGagactgatatacatctgcaa	8	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17280689	A	A	17280689	2	1	57	1	0	0	0	0	0	0	0	1	17559	1277	45	4		4	XKR3	22	17280689	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	204395	17280689	34023877	2387	65376											
MICAL3	57553	broad.mit.edu	37	chr22	18389201	18389201	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaacttgccatagaacttCttggcacccagaccttgtag	8	12	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18389201	G	G	18389201	1	3	57	0	1	0	0	0	0	0	0	0	9664	928	32	4		4	MICAL3	22	18389201	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1108512	18389201	32915365	2388	65377											
PI4KA	5297	broad.mit.edu	37	chr22	21159358	21159358	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctcattgtggatccggtCtgcgtcatgtagaatcttct	10	10	5	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21159358	G	G	21159358	3	3	57	1	0	0	0	0	1	0	0	0	11968	913	32	4	5224	4	PI4KA	22	21159358	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2770157	21159358	30145208	2389	65378											
ZNF70	7621	broad.mit.edu	37	chr22	24087219	24087219	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgctccaaacctctttcctGaagaaaagggtcccccaggt	8	13	1	2	rs145985311		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24087219	A	A	24087219	4	1	57	1	0	0	0	0	0	1	0	0	18230	1299	45	4	1235	4	ZNF70	22	24087219	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2927861	24087219	27217347	2390	65379											
CABIN1	23523	broad.mit.edu	37	chr22	24458476	24458476	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggctgctgaccaaaggcAgaagctctgcaggtaggagg	16	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24458476	T	T	24458476	4	4	57	1	0	0	0	0	0	1	0	0	2554	180	7	5	1730	5	CABIN1	22	24458476	Nonsense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	371257	24458476	26846090	2391	65380											
CABIN1	23523	broad.mit.edu	37	chr22	24487774	24487774	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccactaccacaacccacctGagctggccatggaggccctg	9	17	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24487774	C	C	24487774	3	2	57	1	0	0	0	0	1	0	0	0	2554	1291	45	4	3853	4	CABIN1	22	24487774	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	29298	24487774	26816792	2392	65381											
CRYBB2	1415	broad.mit.edu	37	chr22	25620801	25620801	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttcagcatcctttgggttCtctgagctccctccccacgt	7	17	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25620801	A	A	25620801	1	1	57	0	1	0	0	0	0	0	0	0	3943	928	32	3		3	CRYBB2	22	25620801	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1133027	25620801	25683765	2393	65382											
MYO18B	84700	broad.mit.edu	37	chr22	26166213	26166213	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctactgctgccagccatAtgttccaggtcctgattata	7	14	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26166213	T	T	26166213	1	4	57	0	1	0	0	0	0	0	0	0	10160	464	16	5		5	MYO18B	22	26166213	Intron	SNP	A	TCGA-17-Z026-01A-01W-0746-08	545412	26166213	25138353	2394	65383											
MYO18B	84700	broad.mit.edu	37	chr22	26177727	26177728	+	Missense_Mutation	DNP	GG	TT	TT													cttttggagaagagccgcgtGgcacggcagccggaagggga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26177728	TT	TT	26177727	3	4	57	1	0	0	0	0	1	0	0	0	10160	1335	47	2	2272	2	MYO18B	22	26177727	Missense_Mutation	DNP	GG	TCGA-17-Z026-01A-01W-0746-08	11514	26177727	25126839	2395	65384											
MYO18B	84700	broad.mit.edu	37	chr22	26388535	26388535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctctatgccctttagccGggctggggccacattcactg	12	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26388535	T	T	26388535	1	4	57	0	1	0	0	0	0	0	0	0	10160	1131	39	1		1	MYO18B	22	26388535	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	210808	26388535	24916031	2396	65385											
SEZ6L	23544	broad.mit.edu	37	chr22	26689003	26689003	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacaccagccccatggccctGatggacaaaggtgagaatga	12	11	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26689003	A	A	26689003	2	1	57	1	0	0	0	0	0	0	0	1	14256	1277	45	4		4	SEZ6L	22	26689003	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	300468	26689003	24615563	2397	65386											
MTMR3	8897	broad.mit.edu	37	chr22	30416572	30416572	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcactgagccgtcagctgtCtgctatgagctgcagctctg	11	13	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30416572	G	G	30416572	3	3	57	1	0	0	0	0	1	0	0	0	10039	913	32	4	2982	4	MTMR3	22	30416572	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3727569	30416572	20887994	2398	65387											
SEC14L3	266629	broad.mit.edu	37	chr22	30866364	30866364	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcccctacccccttccctCctctggacctgaacatgtga	6	19	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30866364	A	A	30866364	1	1	57	0	1	0	0	0	0	0	0	0	14096	870	30	3		3	SEC14L3	22	30866364	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	449792	30866364	20438202	2399	65388											
OSBP2	23762	broad.mit.edu	37	chr22	31298757	31298757	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagtggaattcgttcacaagGagcaagaatgagcctgcggt	14	7	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31298757	C	C	31298757	1	2	57	0	1	0	0	0	0	0	0	0	11368	1189	41	4		4	OSBP2	22	31298757	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	432393	31298757	20005809	2400	65389											
PATZ1	23598	broad.mit.edu	37	chr22	31723239	31723239	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtcgctggcatctgagaGgtcaccataggagtcagagc	14	10	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31723239	A	A	31723239	3	1	57	1	0	0	0	0	1	0	0	0	11570	1000	35	4	365	4	PATZ1	22	31723239	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	424482	31723239	19581327	2401	65390											
DEPDC5	9681	broad.mit.edu	37	chr22	32213406	32213406	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgcctggccaaagtgacatCtttcatatacttggtggctt	9	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32213406	G	G	32213406	1	3	57	0	1	0	0	0	0	0	0	0	4482	928	32	4		4	DEPDC5	22	32213406	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	490167	32213406	19091160	2402	65391											
RFPL2	10739	broad.mit.edu	37	chr22	32596100	32596100	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaacagagcaacaagtacaCagccagaagcgacctgagcc	9	13	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32596100	G	G	32596100	1	3	57	0	1	0	0	0	0	0	0	0	13362	493	17	4		4	RFPL2	22	32596100	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	382694	32596100	18708466	2403	65392											
LARGE	9215	broad.mit.edu	37	chr22	34046314	34046314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgagggcaatcgggacTttggacaacttcctccccag	14	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34046314	A	A	34046314	1	1	57	0	1	0	0	0	0	0	0	0	8699	1624	56	5		5	LARGE	22	34046314	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1450214	34046314	17258252	2404	65393											
MYH9	4627	broad.mit.edu	37	chr22	36680075	36680075	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgcttgtgggctctggttGaggaacaagctaccttttga	12	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36680075	A	A	36680075	1	1	57	0	1	0	0	0	0	0	0	0	10136	1305	45	4		4	MYH9	22	36680075	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2633761	36680075	14624491	2405	65394											
CACNG2	10369	broad.mit.edu	37	chr22	36983619	36983619	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaacaaggggagaaggagCacatgaaacatcatagtttt	10	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36983619	T	T	36983619	1	4	57	0	1	0	0	0	0	0	0	0	2583	725	25	4		4	CACNG2	22	36983619	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	303544	36983619	14320947	2406	65395											
IL2RB	3560	broad.mit.edu	37	chr22	37529574	37529574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgctggggaaagtcgaGtgaggtgacacagctaggca	16	8	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37529574	T	T	37529574	1	4	57	0	1	0	0	0	0	0	0	0	7757	1044	36	3		3	IL2RB	22	37529574	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	545955	37529574	13774992	2407	65396											
DDX17	10521	broad.mit.edu	37	chr22	38888173	38888173	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcattccttgctatctgatCtgtttacataaccatgttaa	5	9	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38888173	G	G	38888173	1	3	57	0	1	0	0	0	0	0	0	0	4377	928	32	4		4	DDX17	22	38888173	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1358599	38888173	12416393	2408	65397											
APOBEC3D	140564	broad.mit.edu	37	chr22	39425497	39425497	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcaccactcagctgtcttCcggaagaggggcgtcttccg	12	13	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39425497	T	T	39425497	2	4	57	1	0	0	0	0	0	0	0	1	794	854	30	4		4	APOBEC3D	22	39425497	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	537324	39425497	11879069	2409	65398											
FAM83F	113828	broad.mit.edu	37	chr22	40415202	40415202	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtcatggacctcttcactGatggtgatatctttcaagac	9	9	5	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40415202	A	A	40415202	3	1	57	1	0	0	0	0	1	0	0	0	5691	1290	45	4	526	4	FAM83F	22	40415202	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	989705	40415202	10889364	2410	65399											
TNRC6B	23112	broad.mit.edu	37	chr22	40521834	40521834	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgttcccatgcaaaccaatGagggagaagtatcggaagaa	11	8	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40521834	A	A	40521834	3	1	57	1	0	0	0	0	1	0	0	0	16464	1291	45	4	15	4	TNRC6B	22	40521834	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	106632	40521834	10782732	2411	65400											
XPNPEP3	63929	broad.mit.edu	37	chr22	41318433	41318433	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggacaagcttggagaacatCtacagcatgatgctgaccct	11	10	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41318433	T	T	41318433	2	4	57	1	0	0	0	0	0	0	0	1	17571	903	32	4		4	XPNPEP3	22	41318433	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	796599	41318433	9986133	2412	65401											
EP300	2033	broad.mit.edu	37	chr22	41545679	41545679	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgtttaatcagtttgtGtcctaaatttatatatcatg	5	5	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41545679	A	A	41545679	1	1	57	0	1	0	0	0	0	0	0	0	5190	1392	48	4		4	EP300	22	41545679	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	227246	41545679	9758887	2413	65402											
EP300	2033	broad.mit.edu	37	chr22	41573857	41573857	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaaccaggcactgtgtctCaacaagccttacaaaacctt	5	13	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41573857	T	T	41573857	4	4	57	1	0	0	0	0	0	1	0	0	5190	827	29	4	6264	4	EP300	22	41573857	Nonsense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	28178	41573857	9730709	2414	65403											
SREBF2	6721	broad.mit.edu	37	chr22	42264729	42264729	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgacacaaacggccaatgGcacgctgcagacccttgccc	10	16	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42264729	C	C	42264729	3	2	57	1	0	0	0	0	1	0	0	0	15260	1203	42	4	663	4	SREBF2	22	42264729	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	690872	42264729	9039837	2415	65404											
SEPT3	55964	broad.mit.edu	37	chr22	42382125	42382125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcgggcatggtgaggacCaggcagggacccctatgggc	16	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42382125	A	A	42382125	1	1	57	0	1	0	0	0	0	0	0	0	14178	609	21	2		2	SEPT3	22	42382125	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	117396	42382125	8922441	2416	65405											
CSF2RA	1438	broad.mit.edu	37	chrX	1424460	1424460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgacctgggatggaagGtggggagtggggagcgtggg	24	4	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1424460	T	T	1424460	1	4	57	0	1	0	0	0	0	0	0	0	3968	1276	44	3		3	CSF2RA	23	1424460	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08		1424460	153846100	2417	65406											
ASMTL	8623	broad.mit.edu	37	chrX	1553973	1553973	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgctgtgttctctcccactCaacctgtaagacaacaacgg	7	14	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1553973	A	A	1553973	3	1	57	1	0	0	0	0	1	0	0	0	1050	825	29	3	1559	3	ASMTL	23	1553973	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	129513	1553973	153716587	2418	65407											
ARSF	416	broad.mit.edu	37	chrX	2990082	2990082	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaggagacccttggtcttCatgtctttggtgtgtgcact	11	10	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2990082	T	T	2990082	2	4	57	1	0	0	0	0	0	0	0	1	995	825	29	4		4	ARSF	23	2990082	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1436109	2990082	152280478	2419	65408											
ARHGAP6	395	broad.mit.edu	37	chrX	11242397	11242397	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaggagccgaatacccTtgaagaatacatcacaggtg	11	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11242397	C	C	11242397	1	2	57	0	1	0	0	0	0	0	0	0	889	1624	56	5		5	ARHGAP6	23	11242397	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	8252315	11242397	144028163	2420	65409											
ARHGAP6	395	broad.mit.edu	37	chrX	11315213	11315213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaccactactcagggagGctccatgatagggcaaaaag	11	9	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11315213	T	T	11315213	1	4	57	0	1	0	0	0	0	0	0	0	889	1218	42	3		3	ARHGAP6	23	11315213	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	72816	11315213	143955347	2421	65410											
AMELX	265	broad.mit.edu	37	chrX	11316741	11316742	+	Frame_Shift_Ins	INS	-	C	C													cccgtgctgtcccaacagcaINSccccccgactcacaccctgc					rs2106416	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11316742	C	C	11316741	7	5	57	1	0	1	1	0	0	0	0	0	569	159	6	0	278	0	AMELX	23	11316741	Frame_Shift_Ins	INS	-	TCGA-17-Z026-01A-01W-0746-08	1528	11316741	143953819	2422	65411											
FIGF	2277	broad.mit.edu	37	chrX	15365210	15365210	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggggaaaaattagcttacTaaggaatcccaccaaattaa	7	7	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15365210	A	A	15365210	1	1	57	0	1	0	0	0	0	0	0	0	5946	1537	53	5		5	FIGF	23	15365210	Intron	SNP	T	TCGA-17-Z026-01A-01W-0746-08	4048469	15365210	139905350	2423	65412											
PHKA2	5256	broad.mit.edu	37	chrX	18943785	18943785	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgttggcctgctctcctcaCctggggtgtaaaagtaaaga	11	10	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18943785	A	A	18943785	5	1	57	1	0	0	0	0	0	0	1	0	11939	521	18	3	2213	3	PHKA2	23	18943785	Splice_Site	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3578575	18943785	136326775	2424	65413											
FAM48B1	100130302	broad.mit.edu	37	chrX	24382733	24382733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtggagggcccagtccaggGagcccaggctttggggagca	18	10	0	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24382733	T	T	24382733	3	4	57	1	0	0	0	0	1	0	0	0	5624	1174	41	3	1858	3	FAM48B1	23	24382733	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5438948	24382733	130887827	2425	65414											
POLA1	5422	broad.mit.edu	37	chrX	24721505	24721505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggggatgttgcttcctaGgcactgtgttagttgcttct	14	8	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24721505	T	T	24721505	1	4	57	0	1	0	0	0	0	0	0	0	12282	1015	35	2		2	POLA1	23	24721505	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	338772	24721505	130549055	2426	65415											
POLA1	5422	broad.mit.edu	37	chrX	24761547	24761547	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaattatatcttatagatCagcgaataggtctcatgact	7	7	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24761547	T	T	24761547	1	4	57	0	1	0	0	0	0	0	0	0	12282	841	29	4		4	POLA1	23	24761547	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	40042	24761547	130509013	2427	65416											
DCAF8L2	347442	broad.mit.edu	37	chrX	27766455	27766455	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttaatttctatggccccagGagtgagtttgtagtgagcgg	14	6	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27766455	A	A	27766455	2	1	57	1	0	0	0	0	0	0	0	1	4311	1165	41	4		4	DCAF8L2	23	27766455	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3004908	27766455	127504105	2428	65417											
MAGEB3	4114	broad.mit.edu	37	chrX	30254097	30254097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaacgccagcagacccGgggtcagacccaggatcacc	12	14	2	3	rs150405296		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30254097	T	T	30254097	3	4	57	1	0	0	0	0	1	0	0	0	9269	1116	39	1	58	1	MAGEB3	23	30254097	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2487642	30254097	125016463	2429	65418											
DMD	1756	broad.mit.edu	37	chrX	32715994	32715994	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgttgacagacctgtgaaGgaaatgggctccgtgtaggg	15	6	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32715994	C	C	32715994	3	2	57	1	0	0	0	0	1	0	0	0	4620	1000	35	4	10631	4	DMD	23	32715994	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2461897	32715994	122554566	2430	65419											
MAOB	4129	broad.mit.edu	37	chrX	43628482	43628482	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagttggtctccaggctctCagatatctttgacctacatg	9	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43628482	T	T	43628482	1	4	57	0	1	0	0	0	0	0	0	0	9318	841	29	4		4	MAOB	23	43628482	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	10912488	43628482	111642078	2431	65420											
FTSJ1	24140	broad.mit.edu	37	chrX	48340055	48340055	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagggctatgaccctcccGagggcttcatcccggacctg	12	15	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48340055	T	T	48340055	4	4	57	1	0	0	0	0	0	1	0	0	6147	1059	37	3	637	3	FTSJ1	23	48340055	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4711573	48340055	106930505	2432	65421											
TFE3	7030	broad.mit.edu	37	chrX	48891690	48891690	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggcagctcagctgggcagGagttgctgacagtgatggct	17	8	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48891690	A	A	48891690	3	1	57	1	0	0	0	0	1	0	0	0	15923	1174	41	4	785	4	TFE3	23	48891690	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	551635	48891690	106378870	2433	65422											
AKAP4	8852	broad.mit.edu	37	chrX	49957746	49957746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaatcaggtccttggccaGtgaatctgtggaagcattga	12	8	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49957746	T	T	49957746	3	4	57	1	0	0	0	0	1	0	0	0	453	1020	36	3	954	3	AKAP4	23	49957746	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1066056	49957746	105312814	2434	65423											
SPANXN5	494197	broad.mit.edu	37	chrX	52825497	52825497	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtgaggatccttcgtcctCctcctcttggactggattga	10	12	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825497	T	T	52825497	1	4	57	0	1	0	0	0	0	0	0	0	15110	870	30	4		4	SPANXN5	23	52825497	3'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2867751	52825497	102445063	2435	65424											
KDM5C	8242	broad.mit.edu	37	chrX	53222385	53222385	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctctggccctgagctccGtaccctctttggctctagct	9	16	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53222385	A	A	53222385	3	1	57	1	0	0	0	0	1	0	0	0	8205	1144	40	4	337	4	KDM5C	23	53222385	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	396888	53222385	102048175	2436	65425											
KDM5C	8242	broad.mit.edu	37	chrX	53240091	53240091	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggttatgctaaggaactGagatcttaagtcattttctt	10	5	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53240091	A	A	53240091	1	1	57	0	1	0	0	0	0	0	0	0	8205	1305	45	4		4	KDM5C	23	53240091	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	17706	53240091	102030469	2437	65426											
PAGE2B	389860	broad.mit.edu	37	chrX	55104100	55104100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcagaccccaaatggctGccttacacactatcagggat	8	12	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55104100	T	T	55104100	1	4	57	0	1	0	0	0	0	0	0	0	11485	1334	46	3		3	PAGE2B	23	55104100	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1864009	55104100	100166460	2438	65427											
PAGE2B	389860	broad.mit.edu	37	chrX	55104114	55104114	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggctgccttacacactatCagggatagagggccaggtgt	13	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55104114	G	G	55104114	1	3	57	0	1	0	0	0	0	0	0	0	11485	841	29	4		4	PAGE2B	23	55104114	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	14	55104114	100166446	2439	65428											
FAAH2	158584	broad.mit.edu	37	chrX	57515144	57515144	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taattgaaaaaatacgttttCaggaacaggtcttgatttct	7	5	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57515144	T	T	57515144	1	4	57	0	1	0	0	0	0	0	0	0	5400	841	29	4		4	FAAH2	23	57515144	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2411030	57515144	97755416	2440	65429											
MTMR8	55613	broad.mit.edu	37	chrX	63444361	63444361	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggagtggctacagcaagaaGaaacaggtcatgaggagcaa	14	6	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63444361	A	A	63444361	1	1	57	0	1	0	0	0	0	0	0	0	10043	957	33	4		4	MTMR8	23	63444361	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5929217	63444361	91826199	2441	65430											
MTMR8	55613	broad.mit.edu	37	chrX	63488886	63488886	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaattgagagcaggtaCagatctcttctggtggctca	10	9	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63488886	T	T	63488886	3	4	57	1	0	0	0	0	1	0	0	0	10043	478	17	4	472	4	MTMR8	23	63488886	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	44525	63488886	91781674	2442	65431											
ARR3	407	broad.mit.edu	37	chrX	69499972	69499972	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtggtgataggaatgcatGagaagaaactggggacagaa	16	3	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69499972	C	C	69499972	1	2	57	0	1	0	0	0	0	0	0	0	983	1305	45	4		4	ARR3	23	69499972	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6011086	69499972	85770588	2443	65432											
DLG3	1741	broad.mit.edu	37	chrX	69669172	69669172	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactctcctttgtgccctcaGagtgaacagactgtgccttt	8	12	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69669172	A	A	69669172	1	1	57	0	1	0	0	0	0	0	0	0	4596	957	33	4		4	DLG3	23	69669172	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	169200	69669172	85601388	2444	65433											
ATRX	546	broad.mit.edu	37	chrX	76940404	76940404	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccaaaagtaggaaacactGaatgttagctcatctatatt	6	8	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76940404	A	A	76940404	1	1	57	0	1	0	0	0	0	0	0	0	1212	1305	45	4		4	ATRX	23	76940404	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	7271232	76940404	78330156	2445	65434											
ATP7A	538	broad.mit.edu	37	chrX	77264821	77264821	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatcagcactcccgtgaatCatttctggtttgcatcagat	7	10	4	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77264821	G	G	77264821	1	3	57	0	1	0	0	0	0	0	0	0	1194	841	29	4		4	ATP7A	23	77264821	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	324417	77264821	78005739	2446	65435											
TBX22	50945	broad.mit.edu	37	chrX	79278800	79278800	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggcacttaatttaccgctCtggtaagatgaggactctcc	9	10	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79278800	A	A	79278800	1	1	57	0	1	0	0	0	0	0	0	0	15780	928	32	3		3	TBX22	23	79278800	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	2013979	79278800	75991760	2447	65436											
PCDH11X	27328	broad.mit.edu	37	chrX	91368764	91368764	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccttcttgacaagaatccGaatggggtccctcatgaact	8	11	2	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91368764	T	T	91368764	1	4	57	0	1	0	0	0	0	0	0	0	11602	1073	37	3		3	PCDH11X	23	91368764	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	12089964	91368764	63901796	2448	65437											
DIAPH2	1730	broad.mit.edu	37	chrX	96213115	96213115	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaaaaatgtataaacctGaagtgtccatgaagagaatc	8	5	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96213115	T	T	96213115	4	4	57	1	0	0	0	0	0	1	0	0	4559	1291	45	3	1965	3	DIAPH2	23	96213115	Nonsense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4844351	96213115	59057445	2449	65438											
ARMCX2	9823	broad.mit.edu	37	chrX	100912657	100912657	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgctcgtccgggtgaggCtcttcagtttaggcttacaa	12	11	2	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100912657	T	T	100912657	1	4	57	0	1	0	0	0	0	0	0	0	964	812	28	4		4	ARMCX2	23	100912657	5'UTR	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4699542	100912657	54357903	2450	65439											
ESX1	80712	broad.mit.edu	37	chrX	103499261	103499261	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacggtaagtttctcatctGggaagggaggaaagcaaaag	13	6	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103499261	C	C	103499261	1	2	57	0	1	0	0	0	0	0	0	0	5305	1363	47	4		4	ESX1	23	103499261	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2586604	103499261	51771299	2451	65440											
IRS4	8471	broad.mit.edu	37	chrX	107977986	107977986	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catttgagccctgaccacctCgggatccctgtccctcgcct	8	18	0	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107977986	G	G	107977986	3	3	57	1	0	0	0	0	1	0	0	0	7912	884	31	4	2188	4	IRS4	23	107977986	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4478725	107977986	47292574	2452	65441											
RGAG1	57529	broad.mit.edu	37	chrX	109693843	109693843	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actatcctgtggctgtggcaGatatgtcaatacccttacat	8	10	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109693843	C	C	109693843	1	2	57	0	1	0	0	0	0	0	0	0	13382	957	33	4		4	RGAG1	23	109693843	5'UTR	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1715857	109693843	45576717	2453	65442											
LUZP4	51213	broad.mit.edu	37	chrX	114541031	114541031	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagatctcatggtcaatctGagagatctcatggccactca	9	10	5	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114541031	C	C	114541031	3	2	57	1	0	0	0	0	1	0	0	0	9175	1291	45	4	618	4	LUZP4	23	114541031	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	4847188	114541031	40729529	2454	65443											
IL13RA1	3597	broad.mit.edu	37	chrX	117875168	117875168	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggtaaagtgaacactatGaattggagccaagaataagc	11	5	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117875168	A	A	117875168	1	1	57	0	1	0	0	0	0	0	0	0	7699	1305	45	4		4	IL13RA1	23	117875168	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	3334137	117875168	37395392	2455	65444											
ATP1B4	23439	broad.mit.edu	37	chrX	119513326	119513326	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttttcttctacctgcAggttaactacacatccccct	3	14	3	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119513326	T	T	119513326	5	4	57	1	0	0	0	0	0	0	1	0	1139	202	7	5	941	5	ATP1B4	23	119513326	Splice_Site	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1638158	119513326	35757234	2456	65445											
ODZ1	10178	broad.mit.edu	37	chrX	123870932	123870932	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgggtagtcattgatctcctCtgaagagagtccgctgcagg	13	10	3	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123870932	T	T	123870932	2	4	57	1	0	0	0	0	0	0	0	1	10929	912	32	4		4	ODZ1	23	123870932	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	4357606	123870932	31399628	2457	65446											
XPNPEP2	7512	broad.mit.edu	37	chrX	128895082	128895082	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccactctgatagtgaagcaaGaaggggcaaggtggacagtc	14	8	1	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128895082	A	A	128895082	1	1	57	0	1	0	0	0	0	0	0	0	17570	957	33	4		4	XPNPEP2	23	128895082	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	5024150	128895082	26375478	2458	65447											
BCORL1	63035	broad.mit.edu	37	chrX	129149328	129149328	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccagtcagggggcgcccatCaggcccaccagcgttgtttc	12	16	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129149328	T	T	129149328	2	4	57	1	0	0	0	0	0	0	0	1	1392	816	29	4		4	BCORL1	23	129149328	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	254246	129149328	26121232	2459	65448											
BCORL1	63035	broad.mit.edu	37	chrX	129150088	129150088	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatgatgtgacggaatctCtgccgcccaagaagatgaag	12	9	1	6			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129150088	G	G	129150088	3	3	57	1	0	0	0	0	1	0	0	0	1392	912	32	4	3350	4	BCORL1	23	129150088	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	760	129150088	26120472	2460	65449											
IGSF1	3547	broad.mit.edu	37	chrX	130410793	130410793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcactatgggccagccGctgtcctaagcacgttctca	10	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130410793	T	T	130410793	1	4	57	0	1	0	0	0	0	0	0	0	7666	1102	38	3		3	IGSF1	23	130410793	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1260705	130410793	24859767	2461	65450											
GPC4	2239	broad.mit.edu	37	chrX	132445407	132445407	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccggcagtgggagcagtaGatcatcttcaacagggcatg	13	11	3	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132445407	C	C	132445407	3	2	57	1	0	0	0	0	1	0	0	0	6665	932	33	4	938	4	GPC4	23	132445407	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2034614	132445407	22825153	2462	65451											
GPR112	139378	broad.mit.edu	37	chrX	135431050	135431050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacaggtccctatctactGtgaacagtggtacaggggta	11	9	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135431050	T	T	135431050	3	4	57	1	0	0	0	0	1	0	0	0	6694	1377	48	3	5195	3	GPR112	23	135431050	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	2985643	135431050	19839510	2463	65452											
GPR112	139378	broad.mit.edu	37	chrX	135431650	135431650	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacagcctctcagactggtCtagtatctaaagatgtcatg	8	10	5	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135431650	G	G	135431650	3	3	57	1	0	0	0	0	1	0	0	0	6694	912	32	4	5795	4	GPR112	23	135431650	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	600	135431650	19838910	2464	65453											
BRS3	680	broad.mit.edu	37	chrX	135574131	135574131	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccctatagattgaatcccGaaagagaattgccagaacgg	9	11	0	4			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135574131	A	A	135574131	3	1	57	1	0	0	0	0	1	0	0	0	1531	1058	37	4	807	4	BRS3	23	135574131	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	142481	135574131	19696429	2465	65454											
ATP11C	286410	broad.mit.edu	37	chrX	138828081	138828081	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaacatacagtgaaatgtCaaaggtgggcgtggaatttg	12	4	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138828081	G	G	138828081	1	3	57	0	1	0	0	0	0	0	0	0	1125	841	29	4		4	ATP11C	23	138828081	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	3253950	138828081	16442479	2466	65455											
ATP11C	286410	broad.mit.edu	37	chrX	138857046	138857046	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctccatcttgtccccagtGagcacccagactttcaggcc	8	16	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138857046	A	A	138857046	2	1	57	1	0	0	0	0	0	0	0	1	1125	1277	45	4		4	ATP11C	23	138857046	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	28965	138857046	16413514	2467	65456											
CDR1	1038	broad.mit.edu	37	chrX	139866323	139866323	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctcaaatccatagcttccGaaaaatccaggtcttccagg	6	14	2	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139866323	A	A	139866323	3	1	57	1	0	0	0	0	1	0	0	0	3201	1059	37	4	583	4	CDR1	23	139866323	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	1009277	139866323	15404237	2468	65457											
MAGEC1	9947	broad.mit.edu	37	chrX	140993803	140993803	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagattcctgtgagccgcTccttctcctccactttattg	6	15	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140993803	A	A	140993803	3	1	57	1	0	0	0	0	1	0	0	0	9272	1551	54	5	619	5	MAGEC1	23	140993803	Missense_Mutation	SNP	T	TCGA-17-Z026-01A-01W-0746-08	1127480	140993803	14276757	2469	65458											
FMR1	2332	broad.mit.edu	37	chrX	147030164	147030164	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaattacagattacagtagGatatggtctgtgtatataac	8	6	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147030164	T	T	147030164	1	4	57	0	1	0	0	0	0	0	0	0	6018	1189	41	3		3	FMR1	23	147030164	Intron	SNP	G	TCGA-17-Z026-01A-01W-0746-08	6036361	147030164	8240396	2470	65459											
MAGEA11	4110	broad.mit.edu	37	chrX	148797986	148797987	+	Nonsense_Mutation	DNP	GG	TT	TT													ctctttggcattgatgtgaaGgaagtggaccccactagcca							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	148797987	TT	TT	148797986	4	4	57	1	0	0	0	0	0	1	0	0	9253	991	35	2	867	2	MAGEA11	23	148797986	Nonsense_Mutation	DNP	GG	TCGA-17-Z026-01A-01W-0746-08	1767822	148797986	6472574	2471	65460											
MAGEA8	4107	broad.mit.edu	37	chrX	149013508	149013508	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccactttcctgatatcttCagcaaagcctctgagtgcat	6	12	3	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149013508	T	T	149013508	2	4	57	1	0	0	0	0	0	0	0	1	9261	825	29	4		4	MAGEA8	23	149013508	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08	215522	149013508	6257052	2472	65461											
CNGA2	1260	broad.mit.edu	37	chrX	150911689	150911689	+	Frame_Shift_Del	DEL	G	-	-													gacctgatctattttgctgtGgacatccacagccctgaggt							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150911689	-	-	150911689	7	5	57	1	0	1	0	1	0	0	0	0	3629	1335	47	0	736	0	CNGA2	23	150911689	Frame_Shift_Del	DEL	G	TCGA-17-Z026-01A-01W-0746-08	1898181	150911689	4358871	2473	65462											
GABRE	2564	broad.mit.edu	37	chrX	151123873	151123873	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagaagcatgggcttttgtCtggttgtagatcaggaagtt	15	4	2	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151123873	G	G	151123873	3	3	57	1	0	0	0	0	1	0	0	0	6230	912	32	4	424	4	GABRE	23	151123873	Missense_Mutation	SNP	C	TCGA-17-Z026-01A-01W-0746-08	212184	151123873	4146687	2474	65463											
GABRA3	2556	broad.mit.edu	37	chrX	151376548	151376548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaagcgagaaccatcctGtgccacttccacggatttgt	9	12	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151376548	T	T	151376548	3	4	57	1	0	0	0	0	1	0	0	0	6222	1386	48	3	791	3	GABRA3	23	151376548	Missense_Mutation	SNP	G	TCGA-17-Z026-01A-01W-0746-08	252675	151376548	3894012	2475	65464											
GABRA3	2556	broad.mit.edu	37	chrX	151393194	151393194	+	Intron	DEL	G	-	-													aagtttcttttggaagatcaGgcaaaaaaaaaagacagaga							TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151393194	-	-	151393194	6	5	57	0	1	1	0	1	0	0	0	0	6222	1015	35	0		0	GABRA3	23	151393194	Intron	DEL	G	TCGA-17-Z026-01A-01W-0746-08	16646	151393194	3877366	2476	65465											
TGIF2LY	90655	broad.mit.edu	37	chrY	3447318	3447318	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagacggcccggctgagacCcaaagcccggtggaaaaaga	14	12	0	3			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3447318	T	T	3447318	2	4	57	1	0	0	0	0	0	0	0	1	15951	610	22	4		4	TGIF2LY	24	3447318	Silent	SNP	C	TCGA-17-Z026-01A-01W-0746-08		3447318	55926248	2477	65466											
PCDH11Y	83259	broad.mit.edu	37	chrY	4972444	4972444	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtaactttctaggaacaaCaaaattccattccccttcca	3	12	1	0			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4972444	G	G	4972444	1	3	57	0	1	0	0	0	0	0	0	0	11603	493	17	4		4	PCDH11Y	24	4972444	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	1525126	4972444	54401122	2478	65467											
PCDH11Y	83259	broad.mit.edu	37	chrY	5205817	5205817	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcaacattgggggcatttCctcaatggaggtgttgtaga	13	7	1	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5205817	T	T	5205817	1	4	57	0	1	0	0	0	0	0	0	0	11603	870	30	4		4	PCDH11Y	24	5205817	Intron	SNP	C	TCGA-17-Z026-01A-01W-0746-08	233373	5205817	54167749	2479	65468											
AMELY	266	broad.mit.edu	37	chrY	6736466	6736466	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggggatgatttggtggtgcAgccatccacccatgggctcg	15	11	0	1			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6736466	T	T	6736466	3	4	57	1	0	0	0	0	1	0	0	0	570	188	7	5	401	5	AMELY	24	6736466	Missense_Mutation	SNP	A	TCGA-17-Z026-01A-01W-0746-08	1530649	6736466	52637100	2480	65469											
NLGN4Y	22829	broad.mit.edu	37	chrY	16952929	16952929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcacgagtgtgagtcgctGcaggcacacgacacgctgag	14	11	1	2			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16952929	T	T	16952929	2	4	57	1	0	0	0	0	0	0	0	1	10560	1306	46	3		3	NLGN4Y	24	16952929	Silent	SNP	G	TCGA-17-Z026-01A-01W-0746-08	10216463	16952929	42420637	2481	65470											
ZBTB40	9923	broad.mit.edu	37	chr1	22852714	22852714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatccaaaccccagagcCggtggccccgacagagcagg	14	14	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22852714	T	T	22852714	3	4	58	1	0	0	0	0	1	0	0	0	17668	652	23	4	3611	4	ZBTB40	1	22852714	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08		22852714	226397907	1	65471											
PLK3	1263	broad.mit.edu	37	chr1	45270161	45270161	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcacacatatggccctgtCggccaacagaaagtaagtgc	11	11	0	1	rs17880829		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45270161	A	A	45270161	4	1	58	1	0	0	0	0	0	1	0	0	12192	893	31	3	1539	3	PLK3	1	45270161	Nonsense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	22417447	45270161	203980460	2	65472											
DAB1	1600	broad.mit.edu	37	chr1	58504251	58504251	+	Intron	DEL	T	-	-													acctgggtttaataagctccTttttttaccaaatccaaagc					rs67264062		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58504251	-	-	58504251	6	5	58	0	1	1	0	1	0	0	0	0	4250	1624	56	0		0	DAB1	1	58504251	Intron	DEL	T	TCGA-17-Z027-01A-01W-0746-08	13234090	58504251	190746370	3	65473											
LRRC7	57554	broad.mit.edu	37	chr1	70300480	70300480	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagactacctgatggcttcaCacagctcctaaacctgaccc	6	15	1	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70300480	G	G	70300480	3	3	58	1	0	0	0	0	1	0	0	0	9107	478	17	4	418	4	LRRC7	1	70300480	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	11796229	70300480	178950141	4	65474											
ABCA4	24	broad.mit.edu	37	chr1	94505587	94505587	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggaacccaagtatggcccgTccagtccttaccatccagga	9	15	0	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94505587	G	G	94505587	1	3	58	0	1	0	0	0	0	0	0	0	34	1682	58	5		5	ABCA4	1	94505587	Intron	SNP	T	TCGA-17-Z027-01A-01W-0746-08	24205107	94505587	154745034	5	65475											
ATXN7L2	127002	broad.mit.edu	37	chr1	110029612	110029612	+	Intron	DEL	C	-	-													actcaccttgattattctttCcacctcctggtgacagaaag							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110029612	-	-	110029612	6	5	58	0	1	1	0	1	0	0	0	0	1221	870	30	0		0	ATXN7L2	1	110029612	Intron	DEL	C	TCGA-17-Z027-01A-01W-0746-08	15524025	110029612	139221009	6	65476											
ADAM15	8751	broad.mit.edu	37	chr1	155030756	155030756	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctccagtgccagacaGgtaggacccagcctctgctg	13	14	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155030756	C	C	155030756	3	2	58	1	0	0	0	0	1	0	0	0	237	1000	35	4	1814	4	ADAM15	1	155030756	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	45001144	155030756	94219865	7	65477											
ASPM	259266	broad.mit.edu	37	chr1	197057474	197057474	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtctgcaactttattaCcaggcttttctcggtatatc	6	10	2	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197057474	T	T	197057474	3	4	58	1	0	0	0	0	1	0	0	0	1060	507	18	4	372	4	ASPM	1	197057474	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	42026718	197057474	52193147	8	65478											
SRGAP2	23380	broad.mit.edu	37	chr1	206621262	206621263	+	Intron	INS	-	A	A													gatattctcccaacctacccINScctgtttcttgtgcactcaa					rs139319509	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206621263	A	A	206621262	6	5	58	0	1	1	1	0	0	0	0	0	15264	638	22	0		0	SRGAP2	1	206621262	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	9563788	206621262	42629359	9	65479											
DTL	51514	broad.mit.edu	37	chr1	212273760	212273760	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacctctcctgccaaggcCcggtctcccatcaacagaag	7	16	3	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212273760	G	G	212273760	2	3	58	1	0	0	0	0	0	0	0	1	4827	610	22	4		4	DTL	1	212273760	Silent	SNP	C	TCGA-17-Z027-01A-01W-0746-08	5652498	212273760	36976861	10	65480											
EPHX1	2052	broad.mit.edu	37	chr1	226027819	226027819	+	Intron	DEL	C	-	-													ggggtaacctcaccaccccaCcccaatgctgcccacagaag							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	226027819	-	-	226027819	6	5	58	0	1	1	0	1	0	0	0	0	5221	522	18	0		0	EPHX1	1	226027819	Intron	DEL	C	TCGA-17-Z027-01A-01W-0746-08	13754059	226027819	23222802	11	65481											
DISC1	27185	broad.mit.edu	37	chr1	231954127	231954127	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggagattagatcattaacAtcagagagagaagggctgga	14	4	2	4			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231954127	T	T	231954127	2	4	58	1	0	0	0	0	0	0	0	1	4578	204	8	5		5	DISC1	1	231954127	Silent	SNP	A	TCGA-17-Z027-01A-01W-0746-08	5926308	231954127	17296494	12	65482											
C1orf101	257044	broad.mit.edu	37	chr1	244800843	244800844	+	Intron	INS	-	T	T													ctgtccttccagcttgttaaINStccatgacacccaccgcaac					rs144349315	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244800844	T	T	244800843	6	5	58	0	1	1	1	0	0	0	0	0	1996	116	4	0		0	C1orf101	1	244800843	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	12846716	244800843	4449778	13	65483											
LTBP1	4052	broad.mit.edu	37	chr2	33173933	33173933	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggactcagcgatcttgctTtgtttcagggtcaatgtctg	11	9	5	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33173933	G	G	33173933	1	3	58	0	1	0	0	0	0	0	0	0	9160	1856	64	5		5	LTBP1	2	33173933	Intron	SNP	T	TCGA-17-Z027-01A-01W-0746-08		33173933	210025440	14	65484											
TET3	200424	broad.mit.edu	37	chr2	74326442	74326442	+	Frame_Shift_Del	DEL	A	-	-													aagacaatcgctgcgtgggcAagattcccgaggatgagcag							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74326442	-	-	74326442	7	5	58	1	0	1	0	1	0	0	0	0	15893	131	5	0	2932	0	TET3	2	74326442	Frame_Shift_Del	DEL	A	TCGA-17-Z027-01A-01W-0746-08	41152509	74326442	168872931	15	65485											
REG1A	5967	broad.mit.edu	37	chr2	79350262	79350262	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagttgtaactcttctcAttgacttataggattccaga	6	10	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79350262	G	G	79350262	1	3	58	0	1	0	0	0	0	0	0	0	13318	232	8	5		5	REG1A	2	79350262	Intron	SNP	A	TCGA-17-Z027-01A-01W-0746-08	5023820	79350262	163849111	16	65486											
LCT	3938	broad.mit.edu	37	chr2	136562486	136562486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacacgcccaggttctgcaGggtgaccagatcctcagcaa	12	13	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136562486	T	T	136562486	3	4	58	1	0	0	0	0	1	0	0	0	8765	991	35	2	1500	2	LCT	2	136562486	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	57212224	136562486	106636887	17	65487											
MCM6	4175	broad.mit.edu	37	chr2	136598504	136598504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatccagcctgggtgagCtcaattagaacatgatcctg	9	10	2	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136598504	A	A	136598504	3	1	58	1	0	0	0	0	1	0	0	0	9484	796	28	3	102	3	MCM6	2	136598504	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	36018	136598504	106600869	18	65488											
SCN2A	6326	broad.mit.edu	37	chr2	166187865	166187865	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagaatccagacagaaatgCccaccatgctggtataaatt	8	9	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166187865	G	G	166187865	3	3	58	1	0	0	0	0	1	0	0	0	14029	747	26	4	2321	4	SCN2A	2	166187865	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	29589361	166187865	77011508	19	65489											
SCN2A	6326	broad.mit.edu	37	chr2	166187914	166187914	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgatttgggactgtTgtaaaccatggttaaaggtg	13	3	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166187914	A	A	166187914	3	1	58	1	0	0	0	0	1	0	0	0	14029	1812	63	5	2370	5	SCN2A	2	166187914	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	49	166187914	77011459	20	65490											
SCN7A	6332	broad.mit.edu	37	chr2	167289191	167289191	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctggagattttttgcttcAttattctcttcagctgttac	7	8	3	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167289191	C	C	167289191	3	2	58	1	0	0	0	0	1	0	0	0	14036	214	8	5	2863	5	SCN7A	2	167289191	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	1101277	167289191	75910182	21	65491											
FAM171B	165215	broad.mit.edu	37	chr2	187608303	187608303	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattactggaaaattagctgGtaagtaccatacttcttact	6	7	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187608303	T	T	187608303	5	4	58	1	0	0	0	0	0	0	1	0	5536	1275	44	3	576	3	FAM171B	2	187608303	Splice_Site	SNP	G	TCGA-17-Z027-01A-01W-0746-08	20319112	187608303	55591070	22	65492											
SGOL2	151246	broad.mit.edu	37	chr2	201436706	201436706	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattcacaaattagaaaaagAtaacttactcccaaaccaaa	3	9	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201436706	G	G	201436706	3	3	58	1	0	0	0	0	1	0	0	0	14330	333	12	5	1659	5	SGOL2	2	201436706	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	13828403	201436706	41762667	23	65493											
NBEAL1	65065	broad.mit.edu	37	chr2	204036657	204036657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgctgtctagaaatggGtaaacagagagatatcaaat	10	4	2	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204036657	T	T	204036657	3	4	58	1	0	0	0	0	1	0	0	0	10282	1261	44	3	6172	3	NBEAL1	2	204036657	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	2599951	204036657	39162716	24	65494											
ABI2	10152	broad.mit.edu	37	chr2	204245064	204245064	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttcgttatattagaaaacCtattgactatacaattctag	5	6	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204245064	T	T	204245064	3	4	58	1	0	0	0	0	1	0	0	0	89	681	24	4	429	4	ABI2	2	204245064	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	208407	204245064	38954309	25	65495											
MYH15	22989	broad.mit.edu	37	chr3	108112888	108112888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacccacctcaatggctGccttcttggccttctcttct	8	15	4	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108112888	T	T	108112888	3	4	58	1	0	0	0	0	1	0	0	0	10128	1319	46	3	555	3	MYH15	3	108112888	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08		108112888	89909542	26	65496											
STXBP5L	9515	broad.mit.edu	37	chr3	121126342	121126342	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcagacttgcctttatgTtcataacatcacggagacat	6	10	3	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121126342	C	C	121126342	3	2	58	1	0	0	0	0	1	0	0	0	15475	1725	60	5	3002	5	STXBP5L	3	121126342	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	13013454	121126342	76896088	27	65497											
EPHB1	2047	broad.mit.edu	37	chr3	134576772	134576772	+	Intron	DEL	A	-	-													tggcatcttggtttacacatAagtctttgtgaatgttgtta							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134576772	-	-	134576772	6	5	58	0	1	1	0	1	0	0	0	0	5216	377	13	0		0	EPHB1	3	134576772	Intron	DEL	A	TCGA-17-Z027-01A-01W-0746-08	13450430	134576772	63445658	28	65498											
SR140	23350	broad.mit.edu	37	chr3	142769851	142769851	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccaggccagagttttcAggagcaagtagaacactaca	9	9	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142769851	T	T	142769851	3	4	58	1	0	0	0	0	1	0	0	0	15249	188	7	5	2713	5	SR140	3	142769851	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	8193079	142769851	55252579	29	65499											
FNDC3B	64778	broad.mit.edu	37	chr3	172065056	172065056	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaggttggaatggggagaaGatgaagaatccttagaactc	13	5	0	5			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172065056	A	A	172065056	3	1	58	1	0	0	0	0	1	0	0	0	6028	942	33	4	2497	4	FNDC3B	3	172065056	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	29295205	172065056	25957374	30	65500											
NAALADL2	254827	broad.mit.edu	37	chr3	174814953	174814953	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accattttatttatttttggGattttgataggttattatgt	7	2	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174814953	A	A	174814953	2	1	58	1	0	0	0	0	0	0	0	1	10224	1161	41	4		4	NAALADL2	3	174814953	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08	2749897	174814953	23207477	31	65501											
ADIPOQ	9370	broad.mit.edu	37	chr3	186564040	186564041	+	Intron	INS	-	T	T													catttgaggattttgtatacINSttttttttttttgagacaga					rs112327442		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186564041	T	T	186564040	6	5	58	0	1	1	1	0	0	0	0	0	317	580	20	0		0	ADIPOQ	3	186564040	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	11749087	186564040	11458390	32	65502											
RTP1	132112	broad.mit.edu	37	chr3	186917481	186917481	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctatgagtgcggcacggcgCggctggacgagtccagcatg	17	11	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186917481	T	T	186917481	3	4	58	1	0	0	0	0	1	0	0	0	13844	759	27	4	421	4	RTP1	3	186917481	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	353441	186917481	11104949	33	65503											
MUC4	4585	broad.mit.edu	37	chr3	195477785	195477785	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacatcgcgcacgtcttcCccggagatgggctggaagac	13	13	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195477785	A	A	195477785	2	1	58	1	0	0	0	0	0	0	0	1	10072	610	22	2		2	MUC4	3	195477785	Silent	SNP	C	TCGA-17-Z027-01A-01W-0746-08	8560304	195477785	2544645	34	65504											
SLC10A7	84068	broad.mit.edu	37	chr4	147402555	147402563	+	Intron	DEL	TGCTGCTGC	-	-													tcttaccatgcctgggtcctTgctgctgctgctgctgctgc					rs112379130		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147402563	-	-	147402555	6	5	58	0	1	1	0	1	0	0	0	0	14492	1827	63	0		0	SLC10A7	4	147402555	Intron	DEL	TGCTGCTGC	TCGA-17-Z027-01A-01W-0746-08		147402555	43751721	35	65505											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903926	190903926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtgggatgtcacagaCggctgtttttacgttgttgg	15	7	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190903926	T	T	190903926	3	4	58	1	0	0	0	0	1	0	0	0	16885	536	19	4	250	4	TUBB4Q	4	190903926	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	43501371	190903926	250350	36	65506											
ADAMTS16	170690	broad.mit.edu	37	chr5	5237074	5237074	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgtgtgtgtatttcTttttaagatcaggacttatg	10	3	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5237074	C	C	5237074	1	2	58	0	1	0	0	0	0	0	0	0	261	1624	56	5		5	ADAMTS16	5	5237074	Intron	SNP	T	TCGA-17-Z027-01A-01W-0746-08		5237074	175678186	37	65507											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239922	5239922	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgaatgggcactggaccGtggactggcccggccggtac	15	13	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5239922	C	C	5239922	3	2	58	1	0	0	0	0	1	0	0	0	261	1145	40	4	2469	4	ADAMTS16	5	5239922	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	2848	5239922	175675338	38	65508											
ADCY2	108	broad.mit.edu	37	chr5	7822840	7822841	+	Intron	DEL	TG	-	-													tgcatgtgtgtgtacatgcaTgtgtgtgtgtgtgtgtgtct					rs33999538		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7822841	-	-	7822840	6	5	58	0	1	1	0	1	0	0	0	0	294	1479	51	0		0	ADCY2	5	7822840	Intron	DEL	TG	TCGA-17-Z027-01A-01W-0746-08	2582918	7822840	173092420	39	65509											
MYO10	4651	broad.mit.edu	37	chr5	16893757	16893758	+	Intron	INS	-	AAG	AAG													gtctcaaaaaaaaaaaaaaaINSaaaagaaaattatttccctc							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAG	16893758	AAG	AAG	16893757	6	5	58	0	1	1	1	0	0	0	0	0	10156	29	1	0		0	MYO10	5	16893757	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	9070917	16893757	164021503	40	65510											
PDZD2	23037	broad.mit.edu	37	chr5	31891750	31891751	+	Intron	INS	-	GTG	GTG													tttctaagggcactggagaaINSgtggcattgtgggcagggta					rs144245494	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTG	31891751	GTG	GTG	31891750	6	5	58	0	1	1	1	0	0	0	0	0	11795	87	3	0		0	PDZD2	5	31891750	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	14997993	31891750	149023510	41	65511											
ADAMTS12	81792	broad.mit.edu	37	chr5	33760985	33760988	+	Intron	DEL	TGTG	-	-													taatttctttgtctttgctcTgtgtgtgtgtgtgtgtgtgt					rs144256710		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33760988	-	-	33760985	6	5	58	0	1	1	0	1	0	0	0	0	257	1595	55	0		0	ADAMTS12	5	33760985	Intron	DEL	TGTG	TCGA-17-Z027-01A-01W-0746-08	1869235	33760985	147154275	42	65512											
GDNF	2668	broad.mit.edu	37	chr5	37815776	37815776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatacatccacaccttttagCggaatgctttcttagaatat	6	9	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37815776	T	T	37815776	3	4	58	1	0	0	0	0	1	0	0	0	6386	768	27	4	25	4	GDNF	5	37815776	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	4054791	37815776	143099484	43	65513											
HEATR7B2	133558	broad.mit.edu	37	chr5	41039551	41039551	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagatgattcttcttaccTtacatcgattcatgaaaaac	6	8	3	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41039551	G	G	41039551	3	3	58	1	0	0	0	0	1	0	0	0	7102	1623	56	5	2789	5	HEATR7B2	5	41039551	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	3223775	41039551	139875709	44	65514											
PCDHB8	56128	broad.mit.edu	37	chr5	140559503	140559503	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggtgcgcaccgccaggCtgctgagcgagcgcgacgcg	18	14	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140559503	G	G	140559503	3	3	58	1	0	0	0	0	1	0	0	0	11642	796	28	4	1890	4	PCDHB8	5	140559503	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	99519952	140559503	40355757	45	65515											
COL11A2	1302	broad.mit.edu	37	chr6	33138952	33138952	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccaggagggccctgggtaAgagaagagagtcagagacac	16	8	1	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33138952	G	G	33138952	1	3	58	0	1	0	0	0	0	0	0	0	3700	87	3	5		5	COL11A2	6	33138952	Intron	SNP	A	TCGA-17-Z027-01A-01W-0746-08		33138952	137976115	46	65516											
GCLC	2729	broad.mit.edu	37	chr6	53379269	53379269	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaccttttctcctctcCtatgtcggatatttcttgtt	5	11	3	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53379269	T	T	53379269	3	4	58	1	0	0	0	0	1	0	0	0	6357	681	24	4	1374	4	GCLC	6	53379269	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	20240317	53379269	117735798	47	65517											
DST	667	broad.mit.edu	37	chr6	56481355	56481355	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacattcgcagtaattctgAgtaatacagagcttgcttgt	8	8	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56481355	C	C	56481355	1	2	58	0	1	0	0	0	0	0	0	0	4823	304	11	5		5	DST	6	56481355	Intron	SNP	A	TCGA-17-Z027-01A-01W-0746-08	3102086	56481355	114633712	48	65518											
PRIM2	5558	broad.mit.edu	37	chr6	57255934	57255934	+	Intron	DEL	A	-	-													tttgcatttctctaatgatcAattgatactgaacttttgtt					rs146345352		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57255934	-	-	57255934	6	5	58	0	1	1	0	1	0	0	0	0	12597	145	5	0		0	PRIM2	6	57255934	Intron	DEL	A	TCGA-17-Z027-01A-01W-0746-08	774579	57255934	113859133	49	65519											
PRIM2	5558	broad.mit.edu	37	chr6	57413830	57413831	+	Intron	DEL	TT	-	-													caagaagagatcatgaagtcTttgtttttctaggaaatttc					rs5876606		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57413831	-	-	57413830	6	5	58	0	1	1	0	1	0	0	0	0	12597	1624	56	0		0	PRIM2	6	57413830	Intron	DEL	TT	TCGA-17-Z027-01A-01W-0746-08	157896	57413830	113701237	50	65520											
PRIM2	5558	broad.mit.edu	37	chr6	57454042	57454042	+	Intron	DEL	G	-	-													gttggaagagataaaagacaGgatagtgttaggattaggca					rs67619850		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57454042	-	-	57454042	6	5	58	0	1	1	0	1	0	0	0	0	12597	1015	35	0		0	PRIM2	6	57454042	Intron	DEL	G	TCGA-17-Z027-01A-01W-0746-08	40212	57454042	113661025	51	65521											
PRIM2	5558	broad.mit.edu	37	chr6	57464060	57464060	+	Intron	DEL	G	-	-													gcccagagaaagcaagccaaGggcaactctgaagtgtcttg					rs66854822		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57464060	-	-	57464060	6	5	58	0	1	1	0	1	0	0	0	0	12597	1015	35	0		0	PRIM2	6	57464060	Intron	DEL	G	TCGA-17-Z027-01A-01W-0746-08	10018	57464060	113651007	52	65522											
SPACA1	81833	broad.mit.edu	37	chr6	88773812	88773812	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttaggtttgtgtgttttcTctagaattgcagatgagaag	11	5	1	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88773812	C	C	88773812	1	2	58	0	1	0	0	0	0	0	0	0	15086	1566	54	5		5	SPACA1	6	88773812	Intron	SNP	T	TCGA-17-Z027-01A-01W-0746-08	31309752	88773812	82341255	53	65523											
ANKRD6	22881	broad.mit.edu	37	chr6	90280770	90280773	+	Intron	DEL	TTTG	-	-													gacaatacttgccttctgttTttgtttgtttgtttttttga							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90280773	-	-	90280770	6	5	58	0	1	1	0	1	0	0	0	0	685	1856	64	0		0	ANKRD6	6	90280770	Intron	DEL	TTTG	TCGA-17-Z027-01A-01W-0746-08	1506958	90280770	80834297	54	65524											
C6orf167	253714	broad.mit.edu	37	chr6	97694493	97694493	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccacaaactgtcttacttTaattgcatacctgaacactg	4	11	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97694493	G	G	97694493	1	3	58	0	1	0	0	0	0	0	0	0	2365	1769	61	5		5	C6orf167	6	97694493	Intron	SNP	T	TCGA-17-Z027-01A-01W-0746-08	7413723	97694493	73420574	55	65525											
GPRC6A	222545	broad.mit.edu	37	chr6	117113721	117113721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagctatgaagtaaatgaGcatgccaaatgtaatgaatt	8	6	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117113721	T	T	117113721	3	4	58	1	0	0	0	0	1	0	0	0	6794	971	34	3	419	3	GPRC6A	6	117113721	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	19419228	117113721	54001346	56	65526											
CCDC28A	25901	broad.mit.edu	37	chr6	139106442	139106442	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcttgaatttggagctctAtggggagttagaggaacttc	13	6	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139106442	C	C	139106442	3	2	58	1	0	0	0	0	1	0	0	0	2829	449	16	5	685	5	CCDC28A	6	139106442	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	21992721	139106442	32008625	57	65527											
TAGAP	117289	broad.mit.edu	37	chr6	159457645	159457645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagccacgggcgagctGtcagaggacgcgtccagcga	17	11	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159457645	T	T	159457645	3	4	58	1	0	0	0	0	1	0	0	0	15656	1368	48	3	789	3	TAGAP	6	159457645	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	20351203	159457645	11657422	58	65528											
FAM120B	84498	broad.mit.edu	37	chr6	170627473	170627473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacaagtaatatccacgaGttcagacgccgaatccaggg	9	11	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170627473	T	T	170627473	3	4	58	1	0	0	0	0	1	0	0	0	5463	1029	36	3	997	3	FAM120B	6	170627473	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	11169828	170627473	487594	59	65529											
ARL4A	10124	broad.mit.edu	37	chr7	12728378	12728378	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccttggcatttgcagcctAcctgtgcaatcataggagat	9	11	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12728378	G	G	12728378	3	3	58	1	0	0	0	0	1	0	0	0	940	391	14	5	501	5	ARL4A	7	12728378	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08		12728378	146410285	60	65530											
ZNF107	51427	broad.mit.edu	37	chr7	64166863	64166863	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtacggggcacaaaggaggtCataatacagttaaccaatgt	11	7	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64166863	T	T	64166863	3	4	58	1	0	0	0	0	1	0	0	0	17841	826	29	4	187	4	ZNF107	7	64166863	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	51438485	64166863	94971800	61	65531											
HGF	3082	broad.mit.edu	37	chr7	81334811	81334811	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttctcatttcccattatAtagagatgtgccactcgtaa	5	10	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81334811	G	G	81334811	2	3	58	1	0	0	0	0	0	0	0	1	7152	456	16	5		5	HGF	7	81334811	Silent	SNP	A	TCGA-17-Z027-01A-01W-0746-08	17167948	81334811	77803852	62	65532											
COL1A2	1278	broad.mit.edu	37	chr7	94055082	94055082	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagagcgcggttaccctggCaatattggtcccgttggtgc	15	10	0	1	rs1800241		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94055082	T	T	94055082	2	4	58	1	0	0	0	0	0	0	0	1	3710	697	25	4		4	COL1A2	7	94055082	Silent	SNP	C	TCGA-17-Z027-01A-01W-0746-08	12720271	94055082	65083581	63	65533											
AASS	10157	broad.mit.edu	37	chr7	121738573	121738573	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttacaaatgtccatgctaAcaggattaatattatatttc	5	6	0	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121738573	T	T	121738573	3	4	58	1	0	0	0	0	1	0	0	0	24	43	2	5	1234	5	AASS	7	121738573	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	27683491	121738573	37400090	64	65534											
OR9A4	130075	broad.mit.edu	37	chr7	141618909	141618909	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcacaaccataatcgtcccCgtgatgctttggggattgct	10	11	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141618909	T	T	141618909	2	4	58	1	0	0	0	0	0	0	0	1	11343	639	23	4		4	OR9A4	7	141618909	Silent	SNP	C	TCGA-17-Z027-01A-01W-0746-08	19880336	141618909	17519754	65	65535											
ZNF425	155054	broad.mit.edu	37	chr7	148801967	148801967	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcaccggtcacactgcggAcactggaagggcttctctcc	11	14	2	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148801967	G	G	148801967	2	3	58	1	0	0	0	0	0	0	0	1	18026	273	10	5		5	ZNF425	7	148801967	Silent	SNP	A	TCGA-17-Z027-01A-01W-0746-08	7183058	148801967	10336696	66	65536											
FBXO25	26260	broad.mit.edu	37	chr8	408529	408529	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtggaagaagctttgtcAgtaccattttgctgaaaagc	11	7	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	408529	G	G	408529	3	3	58	1	0	0	0	0	1	0	0	0	5793	188	7	5	847	5	FBXO25	8	408529	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08		408529	145955493	67	65537											
DLC1	10395	broad.mit.edu	37	chr8	13259057	13259057	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattttctatgtcctgatcAagctggtccagtttcataat	7	9	3	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13259057	T	T	13259057	2	4	58	1	0	0	0	0	0	0	0	1	4590	117	5	5		5	DLC1	8	13259057	Silent	SNP	A	TCGA-17-Z027-01A-01W-0746-08	12850528	13259057	133104965	68	65538											
CDCA2	157313	broad.mit.edu	37	chr8	25346171	25346171	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaagtctcaagaaacaaAgtgtacaaagagagcacttc	10	7	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25346171	G	G	25346171	3	3	58	1	0	0	0	0	1	0	0	0	3116	72	3	5	1683	5	CDCA2	8	25346171	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	12087114	25346171	121017851	69	65539											
CHRNA2	1135	broad.mit.edu	37	chr8	27320983	27320983	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtactcgccgatgagcGggatgaccagcgaggtggac	17	10	0	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27320983	A	A	27320983	3	1	58	1	0	0	0	0	1	0	0	0	3414	1116	39	4	620	4	CHRNA2	8	27320983	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	1974812	27320983	119043039	70	65540											
UNC5D	137970	broad.mit.edu	37	chr8	35648015	35648015	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggaggacacacacgaaactCtcaaacatttcagaatccca	7	12	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35648015	T	T	35648015	2	4	58	1	0	0	0	0	0	0	0	1	17121	900	32	4		4	UNC5D	8	35648015	Silent	SNP	C	TCGA-17-Z027-01A-01W-0746-08	8327032	35648015	110716007	71	65541											
XKR4	114786	broad.mit.edu	37	chr8	56286961	56286961	+	Intron	DEL	G	-	-													acccaaagagagaagtgaccGgttccacctggagagagtga					rs117505542	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56286961	-	-	56286961	6	5	58	0	1	1	0	1	0	0	0	0	17560	1131	39	0		0	XKR4	8	56286961	Intron	DEL	G	TCGA-17-Z027-01A-01W-0746-08	20638946	56286961	90077061	72	65542											
TRPA1	8989	broad.mit.edu	37	chr8	72935136	72935136	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcctcactgaaggtctgAggagctaaggctcaagatgg	14	8	3	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72935136	G	G	72935136	1	3	58	0	1	0	0	0	0	0	0	0	16702	319	11	5		5	TRPA1	8	72935136	3'UTR	SNP	A	TCGA-17-Z027-01A-01W-0746-08	16648175	72935136	73428886	73	65543											
TRPA1	8989	broad.mit.edu	37	chr8	72937357	72937372	+	Intron	DEL	GTGTGTGTGTGTGTGC	-	-													gttcgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgcgtgct					rs72383045		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72937372	-	-	72937357	6	5	58	0	1	1	0	1	0	0	0	0	16702	1392	48	0		0	TRPA1	8	72937357	Intron	DEL	GTGTGTGTGTGTGTGC	TCGA-17-Z027-01A-01W-0746-08	2221	72937357	73426665	74	65544											
C8orf84	157869	broad.mit.edu	37	chr8	74005206	74005206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgggcgaagcaggcggggtCccggccgggacagcagcgcc	20	14	0	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74005206	A	A	74005206	3	1	58	1	0	0	0	0	1	0	0	0	2466	855	30	3	717	3	C8orf84	8	74005206	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	1067849	74005206	72358816	75	65545											
CNBD1	168975	broad.mit.edu	37	chr8	88104644	88104647	+	Intron	DEL	TGTA	-	-													tgtgtgtgtgtatatgtgtgTgtatgtatgtatgtatgtgt							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88104647	-	-	88104644	6	5	58	0	1	1	0	1	0	0	0	0	3623	1711	59	0		0	CNBD1	8	88104644	Intron	DEL	TGTA	TCGA-17-Z027-01A-01W-0746-08	14099438	88104644	58259378	76	65546											
KCNS2	3788	broad.mit.edu	37	chr8	99440424	99440424	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgggagttctacttcgacCgcaaccctgagctcttcccc	9	16	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99440424	T	T	99440424	3	4	58	1	0	0	0	0	1	0	0	0	8159	652	23	4	219	4	KCNS2	8	99440424	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	11335780	99440424	46923598	77	65547											
KHDRBS3	10656	broad.mit.edu	37	chr8	136594172	136594172	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagttgtagtaccacgaggGacgccaactcccagaggagt	14	10	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136594172	T	T	136594172	2	4	58	1	0	0	0	0	0	0	0	1	8218	1161	41	3		3	KHDRBS3	8	136594172	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08	37153748	136594172	9769850	78	65548											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112626340	112626341	+	Intron	INS	-	A	A													acagactgagactctgtctcINSaaaaaaaaaaaaaattcact					rs150719618		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112626341	A	A	112626340	6	5	58	0	1	1	1	0	0	0	0	0	11504	841	29	0		0	PALM2-AKAP2	9	112626340	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08		112626340	28587091	79	65549											
SNAPC4	6621	broad.mit.edu	37	chr9	139270916	139270916	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggaggaagcagagcatttAccagagtctggggctccctg	14	10	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139270916	T	T	139270916	2	4	58	1	0	0	0	0	0	0	0	1	14951	378	14	5		5	SNAPC4	9	139270916	Silent	SNP	A	TCGA-17-Z027-01A-01W-0746-08	26644576	139270916	1942515	80	65550											
C10orf71	118461	broad.mit.edu	37	chr10	50532448	50532448	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttatgagaacaaggaggtgGaaggagagttggagatgggt	19	1	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50532448	T	T	50532448	4	4	58	1	0	0	0	0	0	1	0	0	1625	1175	41	3	1860	3	C10orf71	10	50532448	Nonsense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08		50532448	85002299	81	65551											
PGBD3	267004	broad.mit.edu	37	chr10	50723381	50723381	+	Nonstop_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggtggtgacacctgctAttcagtgtgatattcaacgg	13	7	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50723381	G	G	50723381	4	3	58	1	0	0	0	0	0	0	0	0	11877	462	16	5	5	5	PGBD3	10	50723381	Nonstop_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	190933	50723381	84811366	82	65552											
NFKB2	4791	broad.mit.edu	37	chr10	104156244	104156244	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcgtggaacagcctaagCaggtgagtgagcaaaaggga	15	6	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104156244	T	T	104156244	4	4	58	1	0	0	0	0	0	1	0	0	10471	711	25	4	152	4	NFKB2	10	104156244	Nonsense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	53432863	104156244	31378503	83	65553											
OR4A15	81328	broad.mit.edu	37	chr11	55135668	55135668	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagataccgtctattctacTgcatttgctcccaaaatgat	5	10	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55135668	C	C	55135668	2	2	58	1	0	0	0	0	0	0	0	1	11134	1567	55	5		5	OR4A15	11	55135668	Silent	SNP	T	TCGA-17-Z027-01A-01W-0746-08		55135668	79870848	84	65554											
OR4C15	81309	broad.mit.edu	37	chr11	55322231	55322231	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccatctcttttgaaggctGcatgatgcagctctttgctg	9	10	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55322231	C	C	55322231	3	2	58	1	0	0	0	0	1	0	0	0	11142	1319	46	4	451	4	OR4C15	11	55322231	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	186563	55322231	79684285	85	65555											
DLG2	1740	broad.mit.edu	37	chr11	83544765	83544765	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttccccaccgacaatgttGaagcccaggccagtggagcc	10	15	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83544765	A	A	83544765	2	1	58	1	0	0	0	0	0	0	0	1	4595	1281	45	4		4	DLG2	11	83544765	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08	28222534	83544765	51461751	86	65556											
FAT3	120114	broad.mit.edu	37	chr11	92533300	92533300	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatagtggcttcccatcacTgagcagtgaggttctcgttc	11	10	2	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92533300	G	G	92533300	3	3	58	1	0	0	0	0	1	0	0	0	5748	1580	55	5	7155	5	FAT3	11	92533300	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	8988535	92533300	42473216	87	65557											
CASP5	838	broad.mit.edu	37	chr11	104887334	104887334	+	Intron	DEL	A	-	-													tgcgcttttccaaccggcttAaaaaatggcgcatcagatta							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104887334	-	-	104887334	6	5	58	0	1	1	0	1	0	0	0	0	2700	377	13	0		0	CASP5	11	104887334	Intron	DEL	A	TCGA-17-Z027-01A-01W-0746-08	12354034	104887334	30119182	88	65558											
ERC1	23085	broad.mit.edu	37	chr12	1289831	1289831	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacaactttggaggaggcCcttgcagagaaagtgagtgg	15	6	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1289831	T	T	1289831	2	4	58	1	0	0	0	0	0	0	0	1	5252	610	22	4		4	ERC1	12	1289831	Silent	SNP	C	TCGA-17-Z027-01A-01W-0746-08		1289831	132562064	89	65559											
SYT10	341359	broad.mit.edu	37	chr12	33579379	33579379	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagtgagacaaccaacAaggccagtccacaaaagctg	8	11	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33579379	T	T	33579379	4	4	58	1	0	0	0	0	0	1	0	0	15585	131	5	5	1392	5	SYT10	12	33579379	Nonsense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	32289548	33579379	100272516	90	65560											
KRT71	112802	broad.mit.edu	37	chr12	52943945	52943945	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaggatgggctccaggttgTtcttgcagttgttcaggtcc	14	9	2	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52943945	G	G	52943945	3	3	58	1	0	0	0	0	1	0	0	0	8555	1725	60	5	1079	5	KRT71	12	52943945	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	19364566	52943945	80907950	91	65561											
C12orf42	374470	broad.mit.edu	37	chr12	103778043	103778043	+	Intron	DEL	G	-	-													aagcgacattcaaaaaaaaaGtggggggtgctcctgaccct					rs5800584		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103778043	-	-	103778043	6	5	58	0	1	1	0	1	0	0	0	0	1701	1044	36	0		0	C12orf42	12	103778043	Intron	DEL	G	TCGA-17-Z027-01A-01W-0746-08	50834098	103778043	30073852	92	65562											
HCFC2	29915	broad.mit.edu	37	chr12	104481775	104481775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccttcaggagtcaggatgGaccctcacagacaaggcagt	11	11	3	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104481775	A	A	104481775	3	1	58	1	0	0	0	0	1	0	0	0	7059	1174	41	4	1277	4	HCFC2	12	104481775	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	703732	104481775	29370120	93	65563											
APPL2	55198	broad.mit.edu	37	chr12	105623551	105623554	+	Intron	DEL	TTTC	-	-													ctacgatttccttgtttcttTttctttctttctttcttttt					rs112087712		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105623554	-	-	105623551	6	5	58	0	1	1	0	1	0	0	0	0	820	1856	64	0		0	APPL2	12	105623551	Intron	DEL	TTTC	TCGA-17-Z027-01A-01W-0746-08	1141776	105623551	28228344	94	65564											
LHX5	64211	broad.mit.edu	37	chr12	113909204	113909204	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgagaggttggttttgcactCgcagcactgaacacatttga	11	9	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113909204	A	A	113909204	4	1	58	1	0	0	0	0	0	1	0	0	8846	893	31	3	1128	3	LHX5	12	113909204	Nonsense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	8285653	113909204	19942691	95	65565											
CPB2	1361	broad.mit.edu	37	chr13	46675851	46675851	+	Intron	DEL	A	-	-													gaagtaacaggtcactttacAaaaaaaagtaaaggctgaaa					rs77870113		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46675851	-	-	46675851	6	5	58	0	1	1	0	1	0	0	0	0	3829	145	5	0		0	CPB2	13	46675851	Intron	DEL	A	TCGA-17-Z027-01A-01W-0746-08		46675851	68494027	96	65566											
RB1	5925	broad.mit.edu	37	chr13	48953791	48953791	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccatgcttaaatcagtaaGttaaaaacaatataaaaaaa	3	5	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48953791	A	A	48953791	1	1	58	0	1	0	0	0	0	0	0	0	13206	1044	36	4		4	RB1	13	48953791	Intron	SNP	G	TCGA-17-Z027-01A-01W-0746-08	2277940	48953791	66216087	97	65567											
HNRNPC	3183	broad.mit.edu	37	chr14	21725541	21725542	+	Intron	INS	-	A	A													caaaaacctggaagcaaagtINSaaaaaaaaaataaaaacgtt					rs151293628	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21725542	A	A	21725541	6	5	58	0	1	1	1	0	0	0	0	0	7329	1653	57	0		0	HNRNPC	14	21725541	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08		21725541	85623999	98	65568											
KCNH5	27133	broad.mit.edu	37	chr14	63174557	63174557	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagcggacttcgggcctccCcagccttatccaaacgaagg	10	15	0	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63174557	G	G	63174557	3	3	58	1	0	0	0	0	1	0	0	0	8105	623	22	4	334	4	KCNH5	14	63174557	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	41449016	63174557	44174983	99	65569											
LTBP2	4053	broad.mit.edu	37	chr14	75044492	75044493	+	Intron	INS	-	A	A													gtgctgggattacaggcatgINSgccagcgcgcccagctgacc					rs144935602	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75044493	A	A	75044492	6	5	58	0	1	1	1	0	0	0	0	0	9161	1363	47	0		0	LTBP2	14	75044492	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	11869935	75044492	32305048	100	65570											
TSHR	7253	broad.mit.edu	37	chr14	81574763	81574763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagttattgacaaagatgCatttggaggagtatacagtg	12	4	0	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81574763	A	A	81574763	3	1	58	1	0	0	0	0	1	0	0	0	16747	710	25	3	689	3	TSHR	14	81574763	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	6530271	81574763	25774777	101	65571											
GTF2A1	2957	broad.mit.edu	37	chr14	81654241	81654244	+	Intron	DEL	ATCA	-	-													atactgaatttttgaggactAtcaaactgtttcccacagca							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81654244	-	-	81654241	6	5	58	0	1	1	0	1	0	0	0	0	6917	464	16	0		0	GTF2A1	14	81654241	Intron	DEL	ATCA	TCGA-17-Z027-01A-01W-0746-08	79478	81654241	25695299	102	65572											
FOXN3	1112	broad.mit.edu	37	chr14	89647297	89647298	+	Intron	INS	-	AC	AC													acacacacacacgtgcacatINSacacacacacacacacagtc					rs148989169	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	89647298	AC	AC	89647297	6	5	58	0	1	1	1	0	0	0	0	0	6081	1421	49	0		0	FOXN3	14	89647297	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	7993056	89647297	17702243	103	65573											
CHD2	1106	broad.mit.edu	37	chr15	93467528	93467529	+	Intron	INS	-	TC	TC													agttcttaaatatttttaaaINStctctctctctctcaaaata							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	93467529	TC	TC	93467528	6	5	58	0	1	1	1	0	0	0	0	0	3356	116	4	0		0	CHD2	15	93467528	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08		93467528	9063864	104	65574											
CLDN9	9080	broad.mit.edu	37	chr16	3063820	3063820	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttctacaaccccctggtgGctgaggccctcaagcgggag	12	14	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3063820	C	C	3063820	3	2	58	1	0	0	0	0	1	0	0	0	3524	1203	42	4	459	4	CLDN9	16	3063820	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08		3063820	87290933	105	65575											
CLEC16A	23274	broad.mit.edu	37	chr16	11161215	11161215	+	Intron	DEL	T	-	-													tctaagagcaggtgacggggTttaacctggctggaggtcag					rs34069391		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11161215	-	-	11161215	6	5	58	0	1	1	0	1	0	0	0	0	3532	1740	60	0		0	CLEC16A	16	11161215	Intron	DEL	T	TCGA-17-Z027-01A-01W-0746-08	8097395	11161215	79193538	106	65576											
XYLT1	64131	broad.mit.edu	37	chr16	17207444	17207456	+	Intron	DEL	CTAATGCCAGAGT	-	-													tcctgtcccccttctcctgcCtaatgccagagtctaatcag							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17207456	-	-	17207444	6	5	58	0	1	1	0	1	0	0	0	0	17590	696	24	0		0	XYLT1	16	17207444	Intron	DEL	CTAATGCCAGAGT	TCGA-17-Z027-01A-01W-0746-08	6046229	17207444	73147309	107	65577											
SMG1	23049	broad.mit.edu	37	chr16	18883895	18883895	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccaggtcactgtgcacaaTcatcagattcttactcagaa	7	11	5	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18883895	C	C	18883895	3	2	58	1	0	0	0	0	1	0	0	0	14909	1435	50	5	9243	5	SMG1	16	18883895	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	1676451	18883895	71470858	108	65578											
CDH13	1012	broad.mit.edu	37	chr16	83700693	83700696	+	Intron	DEL	GATG	-	-													ggaaggatggatagatggatGatggatggatggatggatgg					rs5818464		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83700696	-	-	83700693	6	5	58	0	1	1	0	1	0	0	0	0	3129	1305	45	0		0	CDH13	16	83700693	Intron	DEL	GATG	TCGA-17-Z027-01A-01W-0746-08	64816798	83700693	6654060	109	65579											
CTU2	348180	broad.mit.edu	37	chr16	88776695	88776695	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaggttcttgaggtgcGtgttcaccaccccgtgggcc	14	13	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88776695	A	A	88776695	1	1	58	0	1	0	0	0	0	0	0	0	4081	1160	40	4		4	CTU2	16	88776695	Intron	SNP	G	TCGA-17-Z027-01A-01W-0746-08	5076002	88776695	1578058	110	65580											
DEF8	54849	broad.mit.edu	37	chr16	90020796	90020796	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgaaggtgggtgctggTgggagtcagggtgggagctg	21	6	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90020796	C	C	90020796	1	2	58	0	1	0	0	0	0	0	0	0	4420	1711	59	5		5	DEF8	16	90020796	Intron	SNP	T	TCGA-17-Z027-01A-01W-0746-08	1244101	90020796	333957	111	65581											
ASGR2	433	broad.mit.edu	37	chr17	7004973	7004973	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaagtcatcgttccagCggccatccggctggacttca	12	13	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7004973	T	T	7004973	3	4	58	1	0	0	0	0	1	0	0	0	1044	768	27	4	82	4	ASGR2	17	7004973	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08		7004973	74190237	112	65582											
TP53	7157	broad.mit.edu	37	chr17	7577114	7577114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctctcccaggacaggcaCaaacacgcacctcaaagctg	9	15	2	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577114	A	A	7577114	3	1	58	1	0	0	0	0	1	0	0	0	16505	478	17	3	462	3	TP53	17	7577114	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	572141	7577114	73618096	113	65583											
NCOR1	9611	broad.mit.edu	37	chr17	16052788	16052788	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttttcttgcatgatttcTtcttttaaaaaataaaatga	4	4	3	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16052788	C	C	16052788	3	2	58	1	0	0	0	0	1	0	0	0	10330	1617	56	5	6588	5	NCOR1	17	16052788	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	8475674	16052788	65142422	114	65584											
NF1	4763	broad.mit.edu	37	chr17	29664521	29664521	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaccgggacaggtcattctCtcctggctcctatgagagag	11	11	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29664521	T	T	29664521	3	4	58	1	0	0	0	0	1	0	0	0	10451	913	32	4	6794	4	NF1	17	29664521	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	13611733	29664521	51530689	115	65585											
ACCN1	40	broad.mit.edu	37	chr17	32396317	32396320	+	Intron	DEL	CTTC	-	-													ccttcttcctttctttccttCttccttccttcctttcttcc							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32396320	-	-	32396317	6	5	58	0	1	1	0	1	0	0	0	0	128	928	32	0		0	ACCN1	17	32396317	Intron	DEL	CTTC	TCGA-17-Z027-01A-01W-0746-08	2731796	32396317	48798893	116	65586											
SLFN5	162394	broad.mit.edu	37	chr17	33592660	33592660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagacaggcttctaacagCaatgaggaagagaaaactgt	10	6	1	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33592660	A	A	33592660	3	1	58	1	0	0	0	0	1	0	0	0	14851	710	25	3	2443	3	SLFN5	17	33592660	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	1196343	33592660	47602550	117	65587											
CELF4	56853	broad.mit.edu	37	chr18	34887022	34887022	+	Intron	DEL	G	-	-													gaaggcttgggtgagacagaGggggccaccaagtcttcccc					rs113838955		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34887022	-	-	34887022	6	5	58	0	1	1	0	1	0	0	0	0	3248	1015	35	0		0	CELF4	18	34887022	Intron	DEL	G	TCGA-17-Z027-01A-01W-0746-08		34887022	43190226	118	65588											
RAX	30062	broad.mit.edu	37	chr18	56939654	56939654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgcggctgtacacgtccGggtagtgggacttctcgaac	13	13	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56939654	T	T	56939654	3	4	58	1	0	0	0	0	1	0	0	0	13204	1116	39	1	566	1	RAX	18	56939654	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	22052632	56939654	21137594	119	65589											
MYO1F	4542	broad.mit.edu	37	chr19	8595413	8595413	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttctggatggttcgggcAaagccatcgaactttcgctc	11	12	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8595413	G	G	8595413	2	3	58	1	0	0	0	0	0	0	0	1	10167	127	5	5		5	MYO1F	19	8595413	Silent	SNP	A	TCGA-17-Z027-01A-01W-0746-08		8595413	50533570	120	65590											
ELAVL3	1995	broad.mit.edu	37	chr19	11577474	11577474	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatgtcgccaatgctgcCgaagagactcttgaactcat	9	12	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11577474	T	T	11577474	3	4	58	1	0	0	0	0	1	0	0	0	5093	652	23	4	949	4	ELAVL3	19	11577474	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	2982061	11577474	47551509	121	65591											
SPTBN4	57731	broad.mit.edu	37	chr19	41038196	41038196	+	Intron	DEL	G	-	-													tgggttggagagcttgttttGgggggggtgatctgtcccca					rs66513027		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41038196	-	-	41038196	6	5	58	0	1	1	0	1	0	0	0	0	15239	1363	47	0		0	SPTBN4	19	41038196	Intron	DEL	G	TCGA-17-Z027-01A-01W-0746-08	29460722	41038196	18090787	122	65592											
DKKL1	27120	broad.mit.edu	37	chr19	49868484	49868485	+	Intron	INS	-	G	G													aggtaacaggcaaagagagaINSggagatgggacagagacaag					rs142178756	by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49868485	G	G	49868484	6	5	58	0	1	1	1	0	0	0	0	0	4588	319	11	0		0	DKKL1	19	49868484	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	8830288	49868484	9260499	123	65593											
NR1H2	7376	broad.mit.edu	37	chr19	50883110	50883110	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgaaggacttcacctAcagcaaggacgacttccacc	7	14	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50883110	G	G	50883110	3	3	58	1	0	0	0	0	1	0	0	0	10712	391	14	5	1023	5	NR1H2	19	50883110	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	1014626	50883110	8245873	124	65594											
CNOT3	4849	broad.mit.edu	37	chr19	54652228	54652228	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcagcagcagtagtaacAgcagtgccggtggaggggct	18	8	0	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54652228	C	C	54652228	3	2	58	1	0	0	0	0	1	0	0	0	3652	188	7	5	1278	5	CNOT3	19	54652228	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	3769118	54652228	4476755	125	65595											
TCF15	6939	broad.mit.edu	37	chr20	590588	590588	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaccggctcggtggggatGagcgtgcgcagcgccgtgaa	17	12	0	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	590588	A	A	590588	2	1	58	1	0	0	0	0	0	0	0	1	15810	1277	45	4		4	TCF15	20	590588	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08		590588	62434932	126	65596											
ERGIC3	51614	broad.mit.edu	37	chr20	34130126	34130126	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcctgtccgagctgcagtAttacctcaccacggaggtaa	10	12	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34130126	G	G	34130126	3	3	58	1	0	0	0	0	1	0	0	0	5267	449	16	5	149	5	ERGIC3	20	34130126	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	33539538	34130126	28895394	127	65597											
SLC13A3	64849	broad.mit.edu	37	chr20	45217842	45217842	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcttcccgaattacagctcGagccctatcttctgcattgg	7	13	3	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45217842	C	C	45217842	3	2	58	1	0	0	0	0	1	0	0	0	14506	1066	37	4	863	4	SLC13A3	20	45217842	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	11087716	45217842	17807678	128	65598											
ZNF831	128611	broad.mit.edu	37	chr20	57829275	57829275	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagtgagaacagatcacaTagcccaggaaattcacagtg	10	10	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57829275	C	C	57829275	3	2	58	1	0	0	0	0	1	0	0	0	18314	1406	49	5	4529	5	ZNF831	20	57829275	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	12611433	57829275	5196245	129	65599											
BAGE2	85319	broad.mit.edu	37	chr21	11093134	11093135	+	Intron	INS	-	C	C													catttatctgttctcccctaINSccccccacaacgctatctac					rs141935972		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11093135	C	C	11093134	6	5	58	0	1	1	1	0	0	0	0	0	1297	406	14	0		0	BAGE2	21	11093134	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08		11093134	37036761	130	65600											
NCAM2	4685	broad.mit.edu	37	chr21	22807337	22807357	+	Intron	DEL	TTCATTTTTGGAGATAGAATA	-	-													accagaaggagatagaatatTtcatttttggagatagaata					rs73324866	byFrequency;by1000genomes	TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22807357	-	-	22807337	6	5	58	0	1	1	0	1	0	0	0	0	10298	1856	64	0		0	NCAM2	21	22807337	Intron	DEL	TTCATTTTTGGAGATAGAATA	TCGA-17-Z027-01A-01W-0746-08	11714203	22807337	25322558	131	65601											
USP16	10600	broad.mit.edu	37	chr21	30421097	30421097	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaggtgaaaggaagcatgTttacaccaatgccaaaaagc	9	7	0	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30421097	G	G	30421097	3	3	58	1	0	0	0	0	1	0	0	0	17173	1725	60	5	2081	5	USP16	21	30421097	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	7613760	30421097	17708798	132	65602											
DSCAM	1826	broad.mit.edu	37	chr21	41514230	41514230	+	Intron	DEL	A	-	-													ttgacatagacataattaggAaaatacatccatgttgaaat					rs79232614		TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41514230	-	-	41514230	6	5	58	0	1	1	0	1	0	0	0	0	4808	261	9	0		0	DSCAM	21	41514230	Intron	DEL	A	TCGA-17-Z027-01A-01W-0746-08	11093133	41514230	6615665	133	65603											
LSS	4047	broad.mit.edu	37	chr21	47611873	47611873	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctcgatgtcaggatgCctggtggaagagaaggctga	17	7	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47611873	T	T	47611873	2	4	58	1	0	0	0	0	0	0	0	1	9152	753	26	4		4	LSS	21	47611873	Silent	SNP	C	TCGA-17-Z027-01A-01W-0746-08	6097643	47611873	518022	134	65604											
ARSD	414	broad.mit.edu	37	chrX	2825531	2825531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgtgcctcggaggggtcCctggagaggtcaaagagcaa	17	10	1	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2825531	A	A	2825531	3	1	58	1	0	0	0	0	1	0	0	0	993	622	22	2	222	2	ARSD	23	2825531	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08		2825531	152445029	135	65605											
NLGN4X	57502	broad.mit.edu	37	chrX	6035994	6035995	+	Intron	INS	-	A	A													agtgaggtgcaacataagagINSaaaaaaaaaatgaagctttc							TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6035995	A	A	6035994	6	5	58	0	1	1	1	0	0	0	0	0	10559	957	33	0		0	NLGN4X	23	6035994	Intron	INS	-	TCGA-17-Z027-01A-01W-0746-08	3210463	6035994	149234566	136	65606											
FIGF	2277	broad.mit.edu	37	chrX	15364372	15364372	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtatgaaaggggcatctGtcctcacagctgttgcaaaa	11	9	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15364372	A	A	15364372	2	1	58	1	0	0	0	0	0	0	0	1	5946	1368	48	4		4	FIGF	23	15364372	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08	9328378	15364372	139906188	137	65607											
PHEX	5251	broad.mit.edu	37	chrX	22245656	22245656	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggataaatgacagaaggcaGggacttgaggagcctcttct	13	7	2	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22245656	A	A	22245656	2	1	58	1	0	0	0	0	0	0	0	1	11914	991	35	4		4	PHEX	23	22245656	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08	6881284	22245656	133024904	138	65608											
DMD	1756	broad.mit.edu	37	chrX	31224708	31224708	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacgacttacatctgtactTgtcttccaaatgtgctttac	5	11	2	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31224708	A	A	31224708	4	1	58	1	0	0	0	0	0	1	0	0	4620	1821	63	5	1563	5	DMD	23	31224708	Nonsense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	8979052	31224708	124045852	139	65609											
DMD	1756	broad.mit.edu	37	chrX	31947760	31947760	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcttattttcaagtttatCttgctcttctgggcttatgg	9	7	4	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31947760	G	G	31947760	3	3	58	1	0	0	0	0	1	0	0	0	4620	913	32	4	4472	4	DMD	23	31947760	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	723052	31947760	123322800	140	65610											
WNK3	65267	broad.mit.edu	37	chrX	54321231	54321231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgtcacccggtctctaatgGatttagcaacagctttggaa	10	10	2	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54321231	T	T	54321231	3	4	58	1	0	0	0	0	1	0	0	0	17506	1174	41	3	4022	3	WNK3	23	54321231	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	22373471	54321231	100949329	141	65611											
WNK3	65267	broad.mit.edu	37	chrX	54337558	54337558	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcaacttacgtctttAaggtcccagatgtcattagt	9	9	3	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54337558	G	G	54337558	3	3	58	1	0	0	0	0	1	0	0	0	17506	372	13	5	4786	5	WNK3	23	54337558	Missense_Mutation	SNP	A	TCGA-17-Z027-01A-01W-0746-08	16327	54337558	100933002	142	65612											
POF1B	79983	broad.mit.edu	37	chrX	84560880	84560880	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgccaatctcatccatttTagcctgcaacattgggcctg	8	12	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84560880	C	C	84560880	3	2	58	1	0	0	0	0	1	0	0	0	12277	1763	61	5	435	5	POF1B	23	84560880	Missense_Mutation	SNP	T	TCGA-17-Z027-01A-01W-0746-08	30223322	84560880	70709680	143	65613											
GLA	2717	broad.mit.edu	37	chrX	100653424	100653424	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaattacgtccttatcctgAaggagagctttggcttgagg	12	8	0	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100653424	C	C	100653424	2	2	58	1	0	0	0	0	0	0	0	1	6490	233	9	5		5	GLA	23	100653424	Silent	SNP	A	TCGA-17-Z027-01A-01W-0746-08	16092544	100653424	54617136	144	65614											
RGAG1	57529	broad.mit.edu	37	chrX	109696973	109696973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggatcgatgcccatgcCactaccaagagccacagcct	8	15	1	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109696973	A	A	109696973	3	1	58	1	0	0	0	0	1	0	0	0	13382	594	21	2	3130	2	RGAG1	23	109696973	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	9043549	109696973	45573587	145	65615											
LAMP2	3920	broad.mit.edu	37	chrX	119589315	119589315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccttggtaaaattcgcaatCcaggaaaagccaggtccgaa	10	10	0	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119589315	A	A	119589315	3	1	58	1	0	0	0	0	1	0	0	0	8690	856	30	3	1257	3	LAMP2	23	119589315	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	9892342	119589315	35681245	146	65616											
FAM127C	441518	broad.mit.edu	37	chrX	134156334	134156334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaacgtgttctcgtccacGaacatgtaggagctcgtctg	12	10	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134156334	T	T	134156334	3	4	58	1	0	0	0	0	1	0	0	0	5479	1049	37	3	189	3	FAM127C	23	134156334	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	14567019	134156334	21114226	147	65617											
SLC9A6	10479	broad.mit.edu	37	chrX	135104854	135104854	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacacatgatgatgtttgCtggtaagttgtaactttctt	8	6	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135104854	T	T	135104854	3	4	58	1	0	0	0	0	1	0	0	0	14832	797	28	4	1502	4	SLC9A6	23	135104854	Missense_Mutation	SNP	C	TCGA-17-Z027-01A-01W-0746-08	948520	135104854	20165706	148	65618											
CXorf66	347487	broad.mit.edu	37	chrX	139040234	139040234	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacttacattcctgctttGgacgcatcatcgctcagaca	6	12	2	1			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139040234	T	T	139040234	2	4	58	1	0	0	0	0	0	0	0	1	4151	1335	47	2		2	CXorf66	23	139040234	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08	3935380	139040234	16230326	149	65619											
SLITRK2	84631	broad.mit.edu	37	chrX	144904453	144904453	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgaatgacaaccttctGctttcactgcccagcaatgt	6	13	2	2			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144904453	T	T	144904453	2	4	58	1	0	0	0	0	0	0	0	1	14857	1306	46	3		3	SLITRK2	23	144904453	Silent	SNP	G	TCGA-17-Z027-01A-01W-0746-08	5864219	144904453	10366107	150	65620											
PRRG3	79057	broad.mit.edu	37	chrX	150869182	150869182	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accggtacctagccagtcgcGccgggcacaccctcccccgg	11	20	0	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150869182	C	C	150869182	3	2	58	1	0	0	0	0	1	0	0	0	12713	1087	38	4	383	4	PRRG3	23	150869182	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	5964729	150869182	4401378	151	65621											
NSDHL	50814	broad.mit.edu	37	chrX	152031185	152031185	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtcatctttgagggcgtcGatatcaagaatggaactgaa	12	6	3	3			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152031185	A	A	152031185	3	1	58	1	0	0	0	0	1	0	0	0	10765	1058	37	4	474	4	NSDHL	23	152031185	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	1162003	152031185	3239375	152	65622											
DNASE1L1	1774	broad.mit.edu	37	chrX	153633815	153633815	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctccctggccaccttgGccagtgtcagccgctgggca	12	17	1	0			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153633815	A	A	153633815	3	1	58	1	0	0	0	0	1	0	0	0	4701	1203	42	4	841	4	DNASE1L1	23	153633815	Missense_Mutation	SNP	G	TCGA-17-Z027-01A-01W-0746-08	1602630	153633815	1636745	153	65623											
DFFB	1677	broad.mit.edu	37	chr1	3800259	3800259	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaagcagaatctacaaacCccagacaaggttgaagcgga	9	12	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3800259	G	G	3800259	3	3	59	1	0	0	0	0	1	0	0	0	4493	623	22	4	997	4	DFFB	1	3800259	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08		3800259	245450362	1	65624											
SLC2A7	155184	broad.mit.edu	37	chr1	9083086	9083086	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcatgagcttcccgtccaTgaatgttgcgtgtcgctcaa	10	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9083086	A	A	9083086	3	1	59	1	0	0	0	0	1	0	0	0	14664	1464	51	5	1376	5	SLC2A7	1	9083086	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	5282827	9083086	240167535	2	65625											
RBP7	116362	broad.mit.edu	37	chr1	10068244	10068244	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcagagtttggttatctGggacaatgacaggctcacct	11	9	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10068244	A	A	10068244	4	1	59	1	0	0	0	0	0	1	0	0	13268	1357	47	4	276	4	RBP7	1	10068244	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	985158	10068244	239182377	3	65626											
ZBTB17	7709	broad.mit.edu	37	chr1	16270075	16270075	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccctcccagtcctgggcAtggccgctcaccacccacct	9	20	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16270075	G	G	16270075	1	3	59	0	1	0	0	0	0	0	0	0	17653	232	8	5		5	ZBTB17	1	16270075	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6201831	16270075	232980546	4	65627											
ZBTB17	7709	broad.mit.edu	37	chr1	16274778	16274778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctcagccccagccctgaCggggtacctgccgcgttact	11	16	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16274778	A	A	16274778	1	1	59	0	1	0	0	0	0	0	0	0	17653	551	19	3		3	ZBTB17	1	16274778	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4703	16274778	232975843	5	65628											
CROCC	9696	broad.mit.edu	37	chr1	17249187	17249187	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagcgtcctgtgccaggaGaaaggcttgggcgcgcggga	18	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17249187	A	A	17249187	2	1	59	1	0	0	0	0	0	0	0	1	3925	933	33	4		4	CROCC	1	17249187	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	974409	17249187	232001434	6	65629											
PADI3	51702	broad.mit.edu	37	chr1	17586048	17586048	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatatatctccttcggcaccGaccatggctctctgccctgc	7	16	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17586048	A	A	17586048	1	1	59	0	1	0	0	0	0	0	0	0	11473	1073	37	4		4	PADI3	1	17586048	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	336861	17586048	231664573	7	65630											
MRTO4	51154	broad.mit.edu	37	chr1	19584405	19584405	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgagcctggatccaggGcccctggagcagttccccca	12	15	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19584405	T	T	19584405	2	4	59	1	0	0	0	0	0	0	0	1	9946	1190	42	3		3	MRTO4	1	19584405	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1998357	19584405	229666216	8	65631											
OTUD3	23252	broad.mit.edu	37	chr1	20234286	20234286	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcggctggaaaaggattgCtgtgtgctagactttccagt	13	7	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20234286	T	T	20234286	1	4	59	0	1	0	0	0	0	0	0	0	11407	812	28	4		4	OTUD3	1	20234286	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	649881	20234286	229016335	9	65632											
EPHA8	2046	broad.mit.edu	37	chr1	22915265	22915265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggagccctaaatatgaTggggagcccttcccttgggg	13	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22915265	A	A	22915265	1	1	59	0	1	0	0	0	0	0	0	0	5215	1479	51	5		5	EPHA8	1	22915265	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2680979	22915265	226335356	10	65633											
C1QB	713	broad.mit.edu	37	chr1	22987946	22987946	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactctacccccaacaccAccccttgcccaaccaatgca	2	22	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22987946	C	C	22987946	1	2	59	0	1	0	0	0	0	0	0	0	1975	174	6	5		5	C1QB	1	22987946	3'UTR	SNP	A	TCGA-17-Z028-01A-01W-0746-08	72681	22987946	226262675	11	65634											
MAN1C1	57134	broad.mit.edu	37	chr1	26073289	26073289	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgtggtgagtcagaggccCtcggcgggggaggggggcgg	23	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26073289	T	T	26073289	1	4	59	0	1	0	0	0	0	0	0	0	9305	696	24	4		4	MAN1C1	1	26073289	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3085343	26073289	223177332	12	65635											
PAQR7	164091	broad.mit.edu	37	chr1	26189367	26189367	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggatgctgctgcccaccgTgagcaggaagaggccagaaa	15	10	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26189367	G	G	26189367	3	3	59	1	0	0	0	0	1	0	0	0	11534	1696	59	5	80	5	PAQR7	1	26189367	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	116078	26189367	223061254	13	65636											
CCDC21	64793	broad.mit.edu	37	chr1	26582344	26582345	+	Nonsense_Mutation	DNP	GG	TT	TT													gaattgattcgtttacagatGgagcaaatgcaggtagaggt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26582345	TT	TT	26582344	4	4	59	1	0	0	0	0	0	1	0	0	2823	1348	47	2	901	2	CCDC21	1	26582344	Nonsense_Mutation	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	392977	26582344	222668277	14	65637											
COL16A1	1307	broad.mit.edu	37	chr1	32119684	32119684	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagggacaggtcagagggtCccccagggactcagaatgac	14	11	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32119684	G	G	32119684	1	3	59	0	1	0	0	0	0	0	0	0	3705	870	30	4		4	COL16A1	1	32119684	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5537340	32119684	217130937	15	65638											
TSSK3	81629	broad.mit.edu	37	chr1	32829729	32829729	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcagcagaagggggtgTccttccccactcatctgagc	13	13	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32829729	C	C	32829729	3	2	59	1	0	0	0	0	1	0	0	0	16795	1667	58	5	685	5	TSSK3	1	32829729	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	710045	32829729	216420892	16	65639											
ZNF362	149076	broad.mit.edu	37	chr1	33760819	33760819	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccgggcctattcggactcCgcttctttgcagatccacct	8	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33760819	T	T	33760819	2	4	59	1	0	0	0	0	0	0	0	1	17994	639	23	4		4	ZNF362	1	33760819	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	931090	33760819	215489802	17	65640											
C1orf94	84970	broad.mit.edu	37	chr1	34667708	34667708	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgcacctgtgacggttgctGacaagaacaacccgaagtac	10	12	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34667708	T	T	34667708	3	4	59	1	0	0	0	0	1	0	0	0	2093	1290	45	3	1308	3	C1orf94	1	34667708	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	906889	34667708	214582913	18	65641											
GJB5	2709	broad.mit.edu	37	chr1	35223024	35223024	+	Frame_Shift_Del	DEL	C	-	-													ctgtctctggtcttcatcttCcgcgtgctggtgtacctggt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35223024	-	-	35223024	7	5	59	1	0	1	0	1	0	0	0	0	6475	854	30	0	95	0	GJB5	1	35223024	Frame_Shift_Del	DEL	C	TCGA-17-Z028-01A-01W-0746-08	555316	35223024	214027597	19	65642											
CSF3R	1441	broad.mit.edu	37	chr1	36933320	36933321	+	Intron	DNP	CC	AA	AA													gctgggtctcctccctccgaCcaggggattcaaagtcagtc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36933321	AA	AA	36933320	1	1	59	0	1	0	0	0	0	0	0	0	3971	522	18	3		3	CSF3R	1	36933320	Intron	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	1710296	36933320	212317301	20	65643											
GUCA2B	2981	broad.mit.edu	37	chr1	42620447	42620447	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcaggcccagagcctcCtgcccgccgtgtgccaccac	11	20	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42620447	G	G	42620447	3	3	59	1	0	0	0	0	1	0	0	0	6957	680	24	4	193	4	GUCA2B	1	42620447	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5687127	42620447	206630174	21	65644											
TIE1	7075	broad.mit.edu	37	chr1	43772922	43772922	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtatgcccccctggcttCactggcacccgctgtgaaca	10	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43772922	T	T	43772922	2	4	59	1	0	0	0	0	0	0	0	1	16016	825	29	4		4	TIE1	1	43772922	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1152475	43772922	205477699	22	65645											
CYP4X1	260293	broad.mit.edu	37	chr1	47515297	47515297	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagatcttggtgcctatttGagccccaaaggatcagttag	11	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47515297	T	T	47515297	1	4	59	0	1	0	0	0	0	0	0	0	4226	1305	45	3		3	CYP4X1	1	47515297	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3742375	47515297	201735324	23	65646											
AGBL4	84871	broad.mit.edu	37	chr1	50312193	50312193	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaacagggtggaaacagacTaatacaaaagtgaagagaca	10	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50312193	A	A	50312193	1	1	59	0	1	0	0	0	0	0	0	0	377	1537	53	5		5	AGBL4	1	50312193	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2796896	50312193	198938428	24	65647											
YIPF1	54432	broad.mit.edu	37	chr1	54331985	54331985	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatgtcattgccaagagaGatcctgagatgcccagggca	11	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54331985	A	A	54331985	3	1	59	1	0	0	0	0	1	0	0	0	17604	942	33	4	209	4	YIPF1	1	54331985	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4019792	54331985	194918636	25	65648											
C1orf175	374977	broad.mit.edu	37	chr1	55134629	55134629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgggggagccacaggcgGgtctgtggcattggggtggg	23	6	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55134629	T	T	55134629	1	4	59	0	1	0	0	0	0	0	0	0	2036	1247	43	2		2	C1orf175	1	55134629	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	802644	55134629	194115992	26	65649											
C1orf175	374977	broad.mit.edu	37	chr1	55167807	55167807	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcaacctgtatgggaaGgtggtccagaagcttcgggc	14	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55167807	A	A	55167807	2	1	59	1	0	0	0	0	0	0	0	1	2036	991	35	4		4	C1orf175	1	55167807	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	33178	55167807	194082814	27	65650											
DAB1	1600	broad.mit.edu	37	chr1	57973304	57973304	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctttccctctgacaagtaGaggtctgcatcaaccacatc	6	14	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57973304	T	T	57973304	1	4	59	0	1	0	0	0	0	0	0	0	4250	957	33	3		3	DAB1	1	57973304	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2805497	57973304	191277317	28	65651											
DAB1	1600	broad.mit.edu	37	chr1	58771954	58771954	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggggaaggaggaaggaGgaaaaggagaactggaaggg	21	2	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58771954	A	A	58771954	1	1	59	0	1	0	0	0	0	0	0	0	4250	1015	35	4		4	DAB1	1	58771954	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	798650	58771954	190478667	29	65652											
FGGY	55277	broad.mit.edu	37	chr1	59978163	59978163	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgtattcaaatggaatattCcctagaaccgaagacactcc	6	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59978163	A	A	59978163	1	1	59	0	1	0	0	0	0	0	0	0	5928	870	30	3		3	FGGY	1	59978163	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1206209	59978163	189272458	30	65653											
INADL	10207	broad.mit.edu	37	chr1	62367223	62367223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctttctttatgtgttggGgaccgtgtgtgtacagttgg	14	6	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62367223	T	T	62367223	1	4	59	0	1	0	0	0	0	0	0	0	7801	1247	43	2		2	INADL	1	62367223	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2389060	62367223	186883398	31	65654											
RPE65	6121	broad.mit.edu	37	chr1	68898291	68898291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctatcaactgagctagGggagagaataagaaaggaag	13	4	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68898291	T	T	68898291	1	4	59	0	1	0	0	0	0	0	0	0	13656	1247	43	2		2	RPE65	1	68898291	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6531068	68898291	180352330	32	65655											
DEPDC1	55635	broad.mit.edu	37	chr1	68943012	68943012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccagatcttctttcccaCtgataaaacctatgaagggc	6	11	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68943012	A	A	68943012	1	1	59	0	1	0	0	0	0	0	0	0	4479	580	20	3		3	DEPDC1	1	68943012	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	44721	68943012	180307609	33	65656											
DEPDC1	55635	broad.mit.edu	37	chr1	68960168	68960168	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccccacctccctttgatatCttcaattacatgattcttaa	2	13	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68960168	A	A	68960168	3	1	59	1	0	0	0	0	1	0	0	0	4479	913	32	3	2220	3	DEPDC1	1	68960168	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	17156	68960168	180290453	34	65657											
TNNI3K	51086	broad.mit.edu	37	chr1	74701274	74701274	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatgtgttaatttgtataCggaagataaggcagcatgtt	10	3	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74701274	T	T	74701274	1	4	59	0	1	0	0	0	0	0	0	0	16452	551	19	4		4	TNNI3K	1	74701274	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5741106	74701274	174549347	35	65658											
TNNI3K	51086	broad.mit.edu	37	chr1	74901798	74901798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatgaggatgggcatgctGtggtggcagattttggaggt	17	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74901798	T	T	74901798	3	4	59	1	0	0	0	0	1	0	0	0	16452	1377	48	3	2232	3	TNNI3K	1	74901798	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	200524	74901798	174348823	36	65659											
C1orf173	127254	broad.mit.edu	37	chr1	75086359	75086359	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttgatattatatcaacaGcagcttatctataacatcaa	3	7	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75086359	A	A	75086359	1	1	59	0	1	0	0	0	0	0	0	0	2034	986	34	4		4	C1orf173	1	75086359	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	184561	75086359	174164262	37	65660											
SAMD13	148418	broad.mit.edu	37	chr1	84791496	84791496	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagttacctcccttcccaaCagtgggcagaagggagtgag	12	11	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84791496	G	G	84791496	1	3	59	0	1	0	0	0	0	0	0	0	13929	493	17	4		4	SAMD13	1	84791496	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9705137	84791496	164459125	38	65661											
GBP4	115361	broad.mit.edu	37	chr1	89654510	89654510	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtagagaaaacagtagaaaGaagctgttagaagggaaggt	14	2	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89654510	C	C	89654510	1	2	59	0	1	0	0	0	0	0	0	0	6338	957	33	4		4	GBP4	1	89654510	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4863014	89654510	159596111	39	65662											
BRDT	676	broad.mit.edu	37	chr1	92433651	92433651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgaatttaaaacatttGgtacagtgaccatactgtat	9	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92433651	T	T	92433651	1	4	59	0	1	0	0	0	0	0	0	0	1517	1363	47	2		2	BRDT	1	92433651	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2779141	92433651	156816970	40	65663											
SNX7	51375	broad.mit.edu	37	chr1	99225509	99225509	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgatgggagagaagaataGagcagattgcagtaggaaca	15	4	0	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99225509	T	T	99225509	1	4	59	0	1	0	0	0	0	0	0	0	15021	957	33	3		3	SNX7	1	99225509	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6791858	99225509	150025112	41	65664											
VCAM1	7412	broad.mit.edu	37	chr1	101194690	101194690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttactgttgagatctcccCtggaccccggattgctgctc	9	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101194690	A	A	101194690	3	1	59	1	0	0	0	0	1	0	0	0	17264	681	24	2	974	2	VCAM1	1	101194690	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1969181	101194690	148055931	42	65665											
VCAM1	7412	broad.mit.edu	37	chr1	101196963	101196963	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttggaaatgaccttcatcCctaccattgaagatactgga	8	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101196963	G	G	101196963	3	3	59	1	0	0	0	0	1	0	0	0	17264	623	22	4	1436	4	VCAM1	1	101196963	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2273	101196963	148053658	43	65666											
COL11A1	1301	broad.mit.edu	37	chr1	103387096	103387097	+	Missense_Mutation	DNP	GG	AT	AT													cagctccattgggaccttgaGggcctcttgggcctggagga							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	103387097	AT	AT	103387096	3	1	59	1	0	0	0	0	1	0	0	0	3699	1000	35	4	1814	4	COL11A1	1	103387096	Missense_Mutation	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	2190133	103387096	145863525	44	65667											
SLC25A24	29957	broad.mit.edu	37	chr1	108728433	108728433	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcatagctggtgataaatAcaaaagaaagacacaccatc	6	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108728433	G	G	108728433	1	3	59	0	1	0	0	0	0	0	0	0	14601	406	14	5		5	SLC25A24	1	108728433	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5341337	108728433	140522188	45	65668											
GSTM4	2948	broad.mit.edu	37	chr1	110198977	110198977	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtcgcagttcagcccagctGaggcctgtctgcagaatcga	13	12	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110198977	T	T	110198977	1	4	59	0	1	0	0	0	0	0	0	0	6906	1305	45	3		3	GSTM4	1	110198977	5'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1470544	110198977	139051644	46	65669											
GSTM2	2946	broad.mit.edu	37	chr1	110211872	110211872	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggggatgctggggagcctGgtggcccaactgagcttccc	16	11	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110211872	C	C	110211872	1	2	59	0	1	0	0	0	0	0	0	0	6904	1363	47	4		4	GSTM2	1	110211872	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	12895	110211872	139038749	47	65670											
CSDE1	7812	broad.mit.edu	37	chr1	115262199	115262199	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccacaacaacaaaactcaCcagactcgccaaacattaca	2	15	1	1	rs112211707		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115262199	T	T	115262199	5	4	59	1	0	0	0	0	0	0	1	0	3963	521	18	4	191	4	CSDE1	1	115262199	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5050327	115262199	133988422	48	65671											
PTGFRN	5738	broad.mit.edu	37	chr1	117505559	117505559	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaccttctttcattctcaGagctaaggctgggaggtagg	12	9	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117505559	C	C	117505559	1	2	59	0	1	0	0	0	0	0	0	0	12856	957	33	4		4	PTGFRN	1	117505559	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2243360	117505559	131745062	49	65672											
TTF2	8458	broad.mit.edu	37	chr1	117626662	117626662	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtgactttacttcccaTggaacactaatcatctgtcc	5	12	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117626662	C	C	117626662	2	2	59	1	0	0	0	0	0	0	0	1	16845	1461	51	5		5	TTF2	1	117626662	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	121103	117626662	131623959	50	65673											
ANKRD34A	284615	broad.mit.edu	37	chr1	145474737	145474737	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaccaagcgcaaattggtgaGacgccactccatgcagactg	11	12	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145474737	T	T	145474737	3	4	59	1	0	0	0	0	1	0	0	0	662	942	33	3	1411	3	ANKRD34A	1	145474737	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	27848075	145474737	103775884	51	65674											
ITGA10	8515	broad.mit.edu	37	chr1	145537867	145537867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaagagggctctaggaGggcagaggctgggatctgag	18	5	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145537867	T	T	145537867	1	4	59	0	1	0	0	0	0	0	0	0	7943	1015	35	2		2	ITGA10	1	145537867	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	63130	145537867	103712754	52	65675											
GJA5	2702	broad.mit.edu	37	chr1	147245700	147245700	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctccctgcagccctccCcctgtctgtctgcctgttgt	7	20	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147245700	T	T	147245700	1	4	59	0	1	0	0	0	0	0	0	0	6468	638	22	4		4	GJA5	1	147245700	5'Flank	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1707833	147245700	102004921	53	65676											
LOC200030	200030	broad.mit.edu	37	chr1	148176199	148176199	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggctgaaggccaagtggtttCggaagtgatcctgggtgaga	17	6	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148176199	T	T	148176199	1	4	59	0	1	0	0	0	0	0	0	0	8950	899	31	4		4	LOC200030	1	148176199	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	930499	148176199	101074422	54	65677											
SELENBP1	8991	broad.mit.edu	37	chr1	151339452	151339452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccctccagccctctccCcgaggcatgtctaagaggct	8	19	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151339452	A	A	151339452	1	1	59	0	1	0	0	0	0	0	0	0	14127	638	22	2		2	SELENBP1	1	151339452	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3163253	151339452	97911169	55	65678											
FLG	2312	broad.mit.edu	37	chr1	152281636	152281636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccctggttcctgcttgtcCtgggccctgatgattgtccc	10	14	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281636	T	T	152281636	3	4	59	1	0	0	0	0	1	0	0	0	5979	681	24	4	6463	4	FLG	1	152281636	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	942184	152281636	96968985	56	65679											
TPM3	7170	broad.mit.edu	37	chr1	154164571	154164571	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagaaggggctgctgcCtgagtgaccaggaggtcccc	15	10	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154164571	A	A	154164571	1	1	59	1	0	0	0	0	0	0	0	0	16531	696	24	2		2	TPM3	1	154164571	Translation_Start_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1882935	154164571	95086050	57	65680											
GON4L	54856	broad.mit.edu	37	chr1	155727103	155727103	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccttgaggagctgccacatCtgtgtcttgagctgaggaga	13	10	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155727103	G	G	155727103	3	3	59	1	0	0	0	0	1	0	0	0	6636	912	32	4	1485	4	GON4L	1	155727103	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1562532	155727103	93523518	58	65681											
GON4L	54856	broad.mit.edu	37	chr1	155784039	155784039	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgacagcccagaatcaccaTggataaataatctacttata	6	9	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155784039	C	C	155784039	1	2	59	0	1	0	0	0	0	0	0	0	6636	1479	51	5		5	GON4L	1	155784039	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	56936	155784039	93466582	59	65682											
SMG5	23381	broad.mit.edu	37	chr1	156244414	156244414	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccccagatacaccagacatCggtgacatgccatctgtgcc	8	16	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156244414	G	G	156244414	3	3	59	1	0	0	0	0	1	0	0	0	14910	884	31	4	2604	4	SMG5	1	156244414	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	460375	156244414	93006207	60	65683											
TTC24	164118	broad.mit.edu	37	chr1	156555590	156555590	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcacacgccctgcagaggGacagtcctcggcaaagcctc	11	15	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156555590	T	T	156555590	2	4	59	1	0	0	0	0	0	0	0	1	16818	1161	41	3		3	TTC24	1	156555590	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	311176	156555590	92695031	61	65684											
PRCC	5546	broad.mit.edu	37	chr1	156756484	156756484	+	Frame_Shift_Del	DEL	C	-	-													agactaacaggttgctcctgCcccatgccttctcccgcaaa							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156756484	-	-	156756484	7	5	59	1	0	1	0	1	0	0	0	0	12553	739	26	0	611	0	PRCC	1	156756484	Frame_Shift_Del	DEL	C	TCGA-17-Z028-01A-01W-0746-08	200894	156756484	92494137	62	65685											
PRCC	5546	broad.mit.edu	37	chr1	156760925	156760926	+	Intron	DNP	GG	TT	TT													gattcctgaactcaaaatctGgtaaacgaacctgctttgtt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	156760926	TT	TT	156760925	1	4	59	0	1	0	0	0	0	0	0	0	12553	1363	47	2		2	PRCC	1	156760925	Intron	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	4441	156760925	92489696	63	65686											
PEAR1	375033	broad.mit.edu	37	chr1	156873717	156873717	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttgctgcaggcctctgCaatgtcaccgcctctgtgtc	11	14	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156873717	A	A	156873717	1	1	59	0	1	0	0	0	0	0	0	0	11806	725	25	3		3	PEAR1	1	156873717	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	112792	156873717	92376904	64	65687											
PEAR1	375033	broad.mit.edu	37	chr1	156880522	156880522	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggctggctggacaggcccCgactgctcccagcgtatgtg	14	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156880522	T	T	156880522	2	4	59	1	0	0	0	0	0	0	0	1	11806	639	23	4		4	PEAR1	1	156880522	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6805	156880522	92370099	65	65688											
FCRL3	115352	broad.mit.edu	37	chr1	157668027	157668027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaatccagcatcatgctgCtgccctatctctttattttc	5	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157668027	A	A	157668027	1	1	59	0	1	0	0	0	0	0	0	0	5853	812	28	3		3	FCRL3	1	157668027	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	787505	157668027	91582594	66	65689											
FCRL2	79368	broad.mit.edu	37	chr1	157740549	157740549	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtctcaggcatagcctctActtctttaaacaagatggaa	8	9	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157740549	G	G	157740549	1	3	59	0	1	0	0	0	0	0	0	0	5852	406	14	5		5	FCRL2	1	157740549	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	72522	157740549	91510072	67	65690											
FCRL1	115350	broad.mit.edu	37	chr1	157772058	157772058	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatccctgcccaccgatgctCagccccattgaacttcctca	5	18	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157772058	G	G	157772058	1	3	59	0	1	0	0	0	0	0	0	0	5851	841	29	4		4	FCRL1	1	157772058	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	31509	157772058	91478563	68	65691											
OR10Z1	128368	broad.mit.edu	37	chr1	158576722	158576722	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgacactagttattttccAcctctcattctgcagctccc	4	14	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158576722	G	G	158576722	3	3	59	1	0	0	0	0	1	0	0	0	11017	159	6	5	496	5	OR10Z1	1	158576722	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	804664	158576722	90673899	69	65692											
SPTA1	6708	broad.mit.edu	37	chr1	158623221	158623221	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccttccaccagtcctgaaGggagagcagatccccactcc	8	17	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158623221	A	A	158623221	1	1	59	0	1	0	0	0	0	0	0	0	15234	1015	35	4		4	SPTA1	1	158623221	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	46499	158623221	90627400	70	65693											
SPTA1	6708	broad.mit.edu	37	chr1	158627308	158627308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatagttagtattatctaCaataggttccttctctctga	5	9	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158627308	A	A	158627308	3	1	59	1	0	0	0	0	1	0	0	0	15234	478	17	3	4631	3	SPTA1	1	158627308	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4087	158627308	90623313	71	65694											
SPTA1	6708	broad.mit.edu	37	chr1	158639340	158639340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttcacgtagggcatccCgccgggctaacagctgcaaa	10	14	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158639340	A	A	158639340	3	1	59	1	0	0	0	0	1	0	0	0	15234	652	23	1	5724	1	SPTA1	1	158639340	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	12032	158639340	90611281	72	65695											
CADM3	57863	broad.mit.edu	37	chr1	159169502	159169502	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgctataagataagggctCtccccagatctgactgtgtg	10	9	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159169502	A	A	159169502	1	1	59	0	1	0	0	0	0	0	0	0	2594	928	32	3		3	CADM3	1	159169502	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	530162	159169502	90081119	73	65696											
FCRL6	343413	broad.mit.edu	37	chr1	159768575	159768575	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatagaataatggagacacGggggaaaatgctttaggaac	12	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159768575	T	T	159768575	1	4	59	0	1	0	0	0	0	0	0	0	5856	1131	39	1		1	FCRL6	1	159768575	5'Flank	SNP	G	TCGA-17-Z028-01A-01W-0746-08	599073	159768575	89482046	74	65697											
FCRL6	343413	broad.mit.edu	37	chr1	159778370	159778370	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgtgtggggccccgagGtttcccaagatgttgtctca	12	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159778370	A	A	159778370	1	1	59	0	1	0	0	0	0	0	0	0	5856	1276	44	4		4	FCRL6	1	159778370	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	9795	159778370	89472251	75	65698											
ATP1A4	480	broad.mit.edu	37	chr1	160151864	160151864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggatgtgcaggcacgGgggagcatacagaggaaggg	21	6	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160151864	T	T	160151864	1	4	59	0	1	0	0	0	0	0	0	0	1135	1247	43	2		2	ATP1A4	1	160151864	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	373494	160151864	89098757	76	65699											
CASQ1	844	broad.mit.edu	37	chr1	160160848	160160848	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggggcactgcaggcctgcaGagcatgtctagcccctctcc	13	15	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160160848	T	T	160160848	1	4	59	0	1	0	0	0	0	0	0	0	2706	957	33	3		3	CASQ1	1	160160848	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	8984	160160848	89089773	77	65700											
LY9	4063	broad.mit.edu	37	chr1	160786463	160786463	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatcagcctgacctgctcCgtggaggacgggggaaacac	15	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160786463	T	T	160786463	2	4	59	1	0	0	0	0	0	0	0	1	9189	639	23	4		4	LY9	1	160786463	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	625615	160786463	88464158	78	65701											
ARHGAP30	257106	broad.mit.edu	37	chr1	161022213	161022213	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctcagcagagctcccccCatctccccagacttacccct	4	22	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161022213	T	T	161022213	1	4	59	0	1	0	0	0	0	0	0	0	881	609	21	4		4	ARHGAP30	1	161022213	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	235750	161022213	88228408	79	65702											
NDUFS2	4720	broad.mit.edu	37	chr1	161180182	161180182	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttaactatggttttaggtGaggggaatacaacttctctc	9	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161180182	A	A	161180182	1	1	59	0	1	0	0	0	0	0	0	0	10387	1305	45	4		4	NDUFS2	1	161180182	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	157969	161180182	88070439	80	65703											
LMX1A	4009	broad.mit.edu	37	chr1	165182622	165182622	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attactgttcccattgtgctCtatgaaatgaaaggtgtgac	9	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165182622	G	G	165182622	1	3	59	0	1	0	0	0	0	0	0	0	8935	928	32	4		4	LMX1A	1	165182622	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4002440	165182622	84067999	81	65704											
UCK2	7371	broad.mit.edu	37	chr1	165877066	165877066	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaggccgcattgacccgtCtccatcggaccccagcccct	9	19	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165877066	T	T	165877066	1	4	59	0	1	0	0	0	0	0	0	0	17050	928	32	4		4	UCK2	1	165877066	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	694444	165877066	83373555	82	65705											
GPA33	10223	broad.mit.edu	37	chr1	167032878	167032878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcttccagctgtactgaGgggttggtgagccctccttt	11	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167032878	T	T	167032878	3	4	59	1	0	0	0	0	1	0	0	0	6651	1000	35	2	463	2	GPA33	1	167032878	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1155812	167032878	82217743	83	65706											
FMO2	2327	broad.mit.edu	37	chr1	171162464	171162464	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatcactaattattttatttGatccttcaggagaatgtgga	7	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171162464	T	T	171162464	1	4	59	0	1	0	0	0	0	0	0	0	6013	1305	45	3		3	FMO2	1	171162464	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4129586	171162464	78088157	84	65707											
FMO2	2327	broad.mit.edu	37	chr1	171162565	171162565	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagtgactttccaatgcCtgaagattttccaaacttcc	5	11	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171162565	T	T	171162565	3	4	59	1	0	0	0	0	1	0	0	0	6013	681	24	4	230	4	FMO2	1	171162565	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	101	171162565	78088056	85	65708											
FMO4	2329	broad.mit.edu	37	chr1	171310612	171310612	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attgcctacatggatgatatCgctgcctgcataggcacaaa	9	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171310612	T	T	171310612	2	4	59	1	0	0	0	0	0	0	0	1	6015	874	31	4		4	FMO4	1	171310612	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	148047	171310612	77940009	86	65709											
TNN	63923	broad.mit.edu	37	chr1	175049230	175049230	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacccttatagtgctcagGgaatactcactgggtctgga	10	12	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175049230	A	A	175049230	1	1	59	0	1	0	0	0	0	0	0	0	16446	1247	43	4		4	TNN	1	175049230	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3738618	175049230	74201391	87	65710											
TNN	63923	broad.mit.edu	37	chr1	175096171	175096171	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctggacgcccccctctgctCagatccacggctacattctg	8	18	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175096171	A	A	175096171	3	1	59	1	0	0	0	0	1	0	0	0	16446	827	29	3	3041	3	TNN	1	175096171	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	46941	175096171	74154450	88	65711											
TNR	7143	broad.mit.edu	37	chr1	175323467	175323467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtctcagcagaggctgCtgatgagccaaacatcagga	12	10	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175323467	A	A	175323467	1	1	59	0	1	0	0	0	0	0	0	0	16461	812	28	3		3	TNR	1	175323467	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	227296	175323467	73927154	89	65712											
PAPPA2	60676	broad.mit.edu	37	chr1	176501791	176501791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccagcttcctgtccccaCatggtgtgggtcaacgcagc	10	15	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176501791	A	A	176501791	1	1	59	0	1	0	0	0	0	0	0	0	11527	493	17	3		3	PAPPA2	1	176501791	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1178324	176501791	72748830	90	65713											
PAPPA2	60676	broad.mit.edu	37	chr1	176608349	176608349	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattctctgttagttatttTtggttgacccccctttttgt	6	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176608349	C	C	176608349	1	2	59	0	1	0	0	0	0	0	0	0	11527	1856	64	5		5	PAPPA2	1	176608349	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	106558	176608349	72642272	91	65714											
PAPPA2	60676	broad.mit.edu	37	chr1	176659552	176659552	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggctccgttcaccaactAcatgagctacacgggtatca	10	12	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176659552	G	G	176659552	3	3	59	1	0	0	0	0	1	0	0	0	11527	391	14	5	2431	5	PAPPA2	1	176659552	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	51203	176659552	72591069	92	65715											
PAPPA2	60676	broad.mit.edu	37	chr1	176734924	176734924	+	Frame_Shift_Del	DEL	G	-	-													gtgtgctatcacttgtcaaaGgggatttgcccttcaggcca							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176734924	-	-	176734924	7	5	59	1	0	1	0	1	0	0	0	0	11527	1000	35	0	4381	0	PAPPA2	1	176734924	Frame_Shift_Del	DEL	G	TCGA-17-Z028-01A-01W-0746-08	75372	176734924	72515697	93	65716											
PAPPA2	60676	broad.mit.edu	37	chr1	176779051	176779051	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggggtttgtcactttGtggagttttgtctccttatt	12	5	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176779051	C	C	176779051	1	2	59	0	1	0	0	0	0	0	0	0	11527	1392	48	4		4	PAPPA2	1	176779051	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	44127	176779051	72471570	94	65717											
ASTN1	460	broad.mit.edu	37	chr1	176905590	176905590	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgacccacctctatgaggcGaagtgttgtaattgtgagaa	11	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176905590	T	T	176905590	1	4	59	0	1	0	0	0	0	0	0	0	1068	1073	37	3		3	ASTN1	1	176905590	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	126539	176905590	72345031	95	65718											
ASTN1	460	broad.mit.edu	37	chr1	176952053	176952053	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtaaggtaaggaaggtaagGaatagagggatggaaaaggg	18	0	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176952053	T	T	176952053	1	4	59	0	1	0	0	0	0	0	0	0	1068	1189	41	3		3	ASTN1	1	176952053	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	46463	176952053	72298568	96	65719											
ASTN1	460	broad.mit.edu	37	chr1	176979455	176979455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcagtgaattcatacagGggagacagaagacaaggtaa	11	5	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176979455	T	T	176979455	1	4	59	0	1	0	0	0	0	0	0	0	1068	1247	43	2		2	ASTN1	1	176979455	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	27402	176979455	72271166	97	65720											
ASTN1	460	broad.mit.edu	37	chr1	177030246	177030246	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggaggatcctcagctcctCttctgccgactcatgttggg	12	12	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177030246	A	A	177030246	4	1	59	1	0	0	0	0	0	1	0	0	1068	922	32	3	3537	3	ASTN1	1	177030246	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	50791	177030246	72220375	98	65721											
C1orf49	84066	broad.mit.edu	37	chr1	178489486	178489486	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttcaaaatgaagatgctaGttctgaattctctctcgaag	7	9	4	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178489486	C	C	178489486	1	2	59	0	1	0	0	0	0	0	0	0	2063	1044	36	4		4	C1orf49	1	178489486	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1459240	178489486	70761135	99	65722											
CACNA1E	777	broad.mit.edu	37	chr1	181549863	181549863	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcctttttgctgtgctgaCtgtcttccagtgcatcacca	7	13	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181549863	G	G	181549863	3	3	59	1	0	0	0	0	1	0	0	0	2568	565	20	4	924	4	CACNA1E	1	181549863	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3060377	181549863	67700758	100	65723											
GLT25D2	23127	broad.mit.edu	37	chr1	183942810	183942810	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagactccagcatgggggcCacaatagttttgttttctgc	11	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183942810	A	A	183942810	2	1	59	1	0	0	0	0	0	0	0	1	6531	581	21	2		2	GLT25D2	1	183942810	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2392947	183942810	65307811	101	65724											
HMCN1	83872	broad.mit.edu	37	chr1	186107183	186107183	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaattacatttgccttttCttcttcattgtaaaaagatg	5	6	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186107183	A	A	186107183	1	1	59	0	1	0	0	0	0	0	0	0	7287	928	32	3		3	HMCN1	1	186107183	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2164373	186107183	63143438	102	65725											
TPR	7175	broad.mit.edu	37	chr1	186296841	186296841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagagccctataaacataCctaaaactatatgtgaggta	6	7	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186296841	A	A	186296841	1	1	59	0	1	0	0	0	0	0	0	0	16540	522	18	3		3	TPR	1	186296841	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	189658	186296841	62953780	103	65726											
CFHR2	3080	broad.mit.edu	37	chr1	196918927	196918927	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccttctattttgagatgGctcctatgagaatcaatgaa	8	7	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196918927	A	A	196918927	1	1	59	0	1	0	0	0	0	0	0	0	3315	1218	42	4		4	CFHR2	1	196918927	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	10622086	196918927	52331694	104	65727											
PTPRC	5788	broad.mit.edu	37	chr1	198725066	198725066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctatatgacgtcattgCcagcacctaccctgctcaga	6	14	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198725066	A	A	198725066	3	1	59	1	0	0	0	0	1	0	0	0	12905	739	26	3	3808	3	PTPRC	1	198725066	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1806139	198725066	50525555	105	65728											
KIF21B	23046	broad.mit.edu	37	chr1	200973727	200973727	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtttataggcacatggaTaagttggtgaaatggggaag	16	2	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200973727	C	C	200973727	1	2	59	0	1	0	0	0	0	0	0	0	8359	1421	49	5		5	KIF21B	1	200973727	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2248661	200973727	48276894	106	65729											
CACNA1S	779	broad.mit.edu	37	chr1	201035344	201035344	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctggggctcctgcccgGgccctctctcaccttcaacc	8	20	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201035344	A	A	201035344	1	1	59	0	1	0	0	0	0	0	0	0	2573	1247	43	4		4	CACNA1S	1	201035344	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	61617	201035344	48215277	107	65730											
IPO9	55705	broad.mit.edu	37	chr1	201837746	201837746	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgcagaccatcaggcagGgggattccgtgttgccttat	13	9	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201837746	A	A	201837746	1	1	59	0	1	0	0	0	0	0	0	0	7869	1247	43	4		4	IPO9	1	201837746	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	802402	201837746	47412875	108	65731											
REN	5972	broad.mit.edu	37	chr1	204126464	204126464	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtactggaaggtcacagCcatgtgggggttttgtctcc	15	8	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204126464	T	T	204126464	1	4	59	0	1	0	0	0	0	0	0	0	13332	754	26	4		4	REN	1	204126464	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2288718	204126464	45124157	109	65732											
NFASC	23114	broad.mit.edu	37	chr1	204873441	204873441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccgtgttgcccaggctgGtctcgaactcccggactcaa	11	14	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204873441	T	T	204873441	1	4	59	0	1	0	0	0	0	0	0	0	10454	1276	44	3		3	NFASC	1	204873441	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	746977	204873441	44377180	110	65733											
IL24	11009	broad.mit.edu	37	chr1	207073585	207073585	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagcacatatttgcagagTtggtttctatgctgacccct	9	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207073585	C	C	207073585	1	2	59	0	1	0	0	0	0	0	0	0	7747	1740	60	5		5	IL24	1	207073585	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2200144	207073585	42177036	111	65734											
CR1L	1379	broad.mit.edu	37	chr1	207886087	207886087	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacatggaagtcttactcctGttgttttattttttcttctc	5	9	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207886087	C	C	207886087	1	2	59	0	1	0	0	0	0	0	0	0	3873	1392	48	4		4	CR1L	1	207886087	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	812502	207886087	41364534	112	65735											
LAMB3	3914	broad.mit.edu	37	chr1	209799187	209799187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccaaagcgcagggcctgCtcccggaggtccgcatcata	11	15	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209799187	A	A	209799187	3	1	59	1	0	0	0	0	1	0	0	0	8684	796	28	3	1776	3	LAMB3	1	209799187	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1913100	209799187	39451434	113	65736											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209936199	209936199	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccaacaattaagaacgatGccagtcagcaaaccaagtga	8	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209936199	A	A	209936199	3	1	59	1	0	0	0	0	1	0	0	0	16566	1319	46	4	545	4	TRAF3IP3	1	209936199	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	137012	209936199	39314422	114	65737											
IRF6	3664	broad.mit.edu	37	chr1	209968741	209968741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcattatccttctcatcCcagggagcagaccctgtgga	8	13	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209968741	A	A	209968741	3	1	59	1	0	0	0	0	1	0	0	0	7904	624	22	2	1021	2	IRF6	1	209968741	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	32542	209968741	39281880	115	65738											
SYT14	255928	broad.mit.edu	37	chr1	210194461	210194461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgggtaaatatcatgagGccttatccagaacacacaat	8	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210194461	T	T	210194461	3	4	59	1	0	0	0	0	1	0	0	0	15589	1203	42	3	457	3	SYT14	1	210194461	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	225720	210194461	39056160	116	65739											
KCNK2	3776	broad.mit.edu	37	chr1	215345553	215345553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctggcatccatgttaCtcttctaacaggggtttatt	7	9	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215345553	A	A	215345553	1	1	59	0	1	0	0	0	0	0	0	0	8136	580	20	3		3	KCNK2	1	215345553	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5151092	215345553	33905068	117	65740											
USH2A	7399	broad.mit.edu	37	chr1	215972282	215972282	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacaccactccttcttctcCaccacaacactctaaatcgt	2	17	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215972282	T	T	215972282	3	4	59	1	0	0	0	0	1	0	0	0	17162	603	21	4	5775	4	USH2A	1	215972282	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	626729	215972282	33278339	118	65741											
USH2A	7399	broad.mit.edu	37	chr1	216246778	216246779	+	Intron	DNP	GG	AT	AT													tagactttcgagtcttccttGgaaaaccttttatgcctcct							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	216246779	AT	AT	216246778	1	1	59	0	1	0	0	0	0	0	0	0	17162	1363	47	4		4	USH2A	1	216246778	Intron	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	274496	216246778	33003843	119	65742											
USH2A	7399	broad.mit.edu	37	chr1	216370093	216370093	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaacaataacaataacatCaaaacaatgaatgtcgtccc	5	9	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216370093	A	A	216370093	1	1	59	0	1	0	0	0	0	0	0	0	17162	841	29	3		3	USH2A	1	216370093	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	123315	216370093	32880528	120	65743											
EPRS	2058	broad.mit.edu	37	chr1	220205974	220205974	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatggcttaaagttgtgcttCtaaagaaaatgaaatgttaa	9	3	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220205974	G	G	220205974	1	3	59	0	1	0	0	0	0	0	0	0	5233	928	32	4		4	EPRS	1	220205974	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3835881	220205974	29044647	121	65744											
MARK1	4139	broad.mit.edu	37	chr1	220771719	220771719	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatactgaatcatcctaataTaggtatgaaatatatatata	5	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220771719	A	A	220771719	3	1	59	1	0	0	0	0	1	0	0	0	9404	1406	49	5	370	5	MARK1	1	220771719	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	565745	220771719	28478902	122	65745											
MOSC2	54996	broad.mit.edu	37	chr1	220928449	220928449	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagccttcctcaaacaaaCtccacaactgcaggtgttcc	6	15	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220928449	G	G	220928449	3	3	59	1	0	0	0	0	1	0	0	0	9808	565	20	4	439	4	MOSC2	1	220928449	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	156730	220928449	28322172	123	65746											
HHIPL2	79802	broad.mit.edu	37	chr1	222713539	222713539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtccacagcacaacgccaCatgttcctgatcccataggc	8	16	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222713539	A	A	222713539	3	1	59	1	0	0	0	0	1	0	0	0	7161	478	17	3	935	3	HHIPL2	1	222713539	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1785090	222713539	26537082	124	65747											
HHIPL2	79802	broad.mit.edu	37	chr1	222717028	222717028	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtgaaaagccaacccCaagaagcctctctcatcccc	8	15	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222717028	T	T	222717028	2	4	59	1	0	0	0	0	0	0	0	1	7161	593	21	4		4	HHIPL2	1	222717028	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3489	222717028	26533593	125	65748											
ENAH	55740	broad.mit.edu	37	chr1	225688728	225688728	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catagtcaagtccttccgtcTggactccattggcactgggc	10	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225688728	A	A	225688728	3	1	59	1	0	0	0	0	1	0	0	0	5153	1580	55	5	141	5	ENAH	1	225688728	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2971700	225688728	23561893	126	65749											
ENAH	55740	broad.mit.edu	37	chr1	225702735	225702735	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgagtccaatttatcaTagttgtaaaagtctagatca	6	5	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	225702735	C	C	225702735	1	2	59	0	1	0	0	0	0	0	0	0	5153	1421	49	5		5	ENAH	1	225702735	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	14007	225702735	23547886	127	65750											
PSEN2	5664	broad.mit.edu	37	chr1	227079330	227079330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtgctggtgctcagggGgaccccttcttggagctttg	15	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227079330	T	T	227079330	1	4	59	0	1	0	0	0	0	0	0	0	12757	1247	43	2		2	PSEN2	1	227079330	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1376595	227079330	22171291	128	65751											
PRSS38	339501	broad.mit.edu	37	chr1	228003843	228003843	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcggcgtccctgcgccCgagaggaagtggccgtggca	18	13	0	1	rs113353225	byFrequency;by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228003843	G	G	228003843	2	3	59	1	0	0	0	0	0	0	0	1	12733	639	23	4		4	PRSS38	1	228003843	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	924513	228003843	21246778	129	65752											
OBSCN	84033	broad.mit.edu	37	chr1	228543940	228543940	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccttctgactgcagtgcctCctgcatgccactgacctgcc	8	17	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228543940	A	A	228543940	1	1	59	0	1	0	0	0	0	0	0	0	10907	870	30	3		3	OBSCN	1	228543940	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	540097	228543940	20706681	130	65753											
RYR2	6262	broad.mit.edu	37	chr1	237617677	237617677	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgacaatagagaaatgtttAtggtttattttaggggcctt	10	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237617677	T	T	237617677	1	4	59	0	1	0	0	0	0	0	0	0	13880	464	16	5		5	RYR2	1	237617677	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	9073737	237617677	11632944	131	65754											
RYR2	6262	broad.mit.edu	37	chr1	237923091	237923091	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagaaaatgcttgactacCtcaaggagaaaaaggatgtg	10	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237923091	T	T	237923091	3	4	59	1	0	0	0	0	1	0	0	0	13880	681	24	4	11671	4	RYR2	1	237923091	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	305414	237923091	11327530	132	65755											
RYR2	6262	broad.mit.edu	37	chr1	237941969	237941969	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctgtttatgctccagggtCcttgcactgggaatcaacag	11	10	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237941969	T	T	237941969	3	4	59	1	0	0	0	0	1	0	0	0	13880	855	30	4	12129	4	RYR2	1	237941969	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	18878	237941969	11308652	133	65756											
ZP4	57829	broad.mit.edu	37	chr1	238048719	238048719	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggatgggccactgtggctGactcagggggtcagtgctgg	18	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048719	T	T	238048719	3	4	59	1	0	0	0	0	1	0	0	0	18347	1299	45	3	510	3	ZP4	1	238048719	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	106750	238048719	11201902	134	65757											
ZP4	57829	broad.mit.edu	37	chr1	238050025	238050025	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcagggcttacctgagaaTgcccaccttatggcagatgg	11	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238050025	G	G	238050025	1	3	59	0	1	0	0	0	0	0	0	0	18347	1479	51	5		5	ZP4	1	238050025	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1306	238050025	11200596	135	65758											
ZP4	57829	broad.mit.edu	37	chr1	238052830	238052830	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttctccatgttggtcaggCtggactccaactcccgacct	9	14	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238052830	G	G	238052830	1	3	59	0	1	0	0	0	0	0	0	0	18347	812	28	4		4	ZP4	1	238052830	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2805	238052830	11197791	136	65759											
FMN2	56776	broad.mit.edu	37	chr1	240308545	240308545	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatcttcctcagacagctCctgttctttgtccttgtccc	5	14	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240308545	A	A	240308545	1	1	59	0	1	0	0	0	0	0	0	0	6008	870	30	3		3	FMN2	1	240308545	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2255715	240308545	8942076	137	65760											
RGS7	6000	broad.mit.edu	37	chr1	241083224	241083224	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaaagagagctgtctcaaGagaagattctcaaagaccag	9	9	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241083224	A	A	241083224	1	1	59	0	1	0	0	0	0	0	0	0	13419	957	33	4		4	RGS7	1	241083224	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	774679	241083224	8167397	138	65761											
RGS7	6000	broad.mit.edu	37	chr1	241262108	241262108	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttataaagttgaactttTttgaaaaaaaatcagctctc	4	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241262108	A	A	241262108	1	1	59	0	1	0	0	0	0	0	0	0	13419	1856	64	5		5	RGS7	1	241262108	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	178884	241262108	7988513	139	65762											
CHML	1122	broad.mit.edu	37	chr1	241798348	241798348	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatcaattagcaatccttGagaatacagcagttttgaca	7	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241798348	C	C	241798348	3	2	59	1	0	0	0	0	1	0	0	0	3382	1299	45	4	1253	4	CHML	1	241798348	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	536240	241798348	7452273	140	65763											
PLD5	200150	broad.mit.edu	37	chr1	242355198	242355198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgggtgatagagccagtGgtgaaagaaagaagaaagag	15	3	1	7			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242355198	T	T	242355198	1	4	59	0	1	0	0	0	0	0	0	0	12144	1363	47	2		2	PLD5	1	242355198	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	556850	242355198	6895423	141	65764											
PLD5	200150	broad.mit.edu	37	chr1	242355220	242355220	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaagaaagaagaaagagtGagacagaaaagaaagactca	11	3	1	9			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242355220	A	A	242355220	1	1	59	0	1	0	0	0	0	0	0	0	12144	1305	45	4		4	PLD5	1	242355220	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	22	242355220	6895401	142	65765											
PLD5	200150	broad.mit.edu	37	chr1	242511370	242511370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctttggatttcttgccCgccccctaaaagagaatttt	6	13	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242511370	A	A	242511370	1	1	59	0	1	0	0	0	0	0	0	0	12144	667	23	1		1	PLD5	1	242511370	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	156150	242511370	6739251	143	65766											
ZNF695	57116	broad.mit.edu	37	chr1	247163267	247163267	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccaagggagatcaggtttCtgtagttctctaacatcaca	8	10	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247163267	A	A	247163267	3	1	59	1	0	0	0	0	1	0	0	0	18225	913	32	3	1446	3	ZNF695	1	247163267	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4651897	247163267	2087354	144	65767											
NLRP3	114548	broad.mit.edu	37	chr1	247587725	247587726	+	Missense_Mutation	DNP	GG	CT	CT													tgactggcagaaggccgagcGgggagacattctcctgagca							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	247587726	CT	CT	247587725	3	2	59	1	0	0	0	0	1	0	0	0	10573	1116	39	4	990	4	NLRP3	1	247587725	Missense_Mutation	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	424458	247587725	1662896	145	65768											
OR2W5	441932	broad.mit.edu	37	chr1	247655361	247655361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggggtgggagaaagggGctggggagcctcaacgaggg	21	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247655361	T	T	247655361	3	4	59	1	0	0	0	0	1	0	0	0	11128	1203	42	3	934	3	OR2W5	1	247655361	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	67636	247655361	1595260	146	65769											
OR13G1	441933	broad.mit.edu	37	chr1	247835664	247835664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctcttgccttctactGtgcggatacggagaatagca	9	12	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247835664	T	T	247835664	3	4	59	1	0	0	0	0	1	0	0	0	11036	1377	48	3	247	3	OR13G1	1	247835664	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	180303	247835664	1414957	147	65770											
OR2M5	127059	broad.mit.edu	37	chr1	248308812	248308812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctgttatgtcttatgaCcgctatattgccatttgcca	8	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308812	A	A	248308812	3	1	59	1	0	0	0	0	1	0	0	0	11107	506	18	3	365	3	OR2M5	1	248308812	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	473148	248308812	941809	148	65771											
OR2M3	127062	broad.mit.edu	37	chr1	248366583	248366583	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgtccctcatggacctcAtgctcatctgcaccaccgta	6	16	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366583	T	T	248366583	3	4	59	1	0	0	0	0	1	0	0	0	11105	217	8	5	216	5	OR2M3	1	248366583	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	57771	248366583	884038	149	65772											
OR2M7	391196	broad.mit.edu	37	chr1	248487588	248487588	+	Frame_Shift_Del	DEL	C	-	-													aatttgtgtggcacagccagCcatagaaatggacttgctgc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248487588	-	-	248487588	7	5	59	1	0	1	0	1	0	0	0	0	11108	739	26	0	658	0	OR2M7	1	248487588	Frame_Shift_Del	DEL	C	TCGA-17-Z028-01A-01W-0746-08	121005	248487588	763033	150	65773											
OR2T10	127069	broad.mit.edu	37	chr1	248756268	248756268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacatcatatctttctcagGagtttggtaggagctgggga	13	6	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248756268	T	T	248756268	3	4	59	1	0	0	0	0	1	0	0	0	11111	1174	41	3	139	3	OR2T10	1	248756268	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	268680	248756268	494353	151	65774											
SNTG2	54221	broad.mit.edu	37	chr2	1251325	1251325	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacagacagagtgcttggtCctgccgtttgctgtttctgc	13	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1251325	A	A	1251325	1	1	59	0	1	0	0	0	0	0	0	0	14989	870	30	3		3	SNTG2	2	1251325	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08		1251325	241948048	152	65775											
SNTG2	54221	broad.mit.edu	37	chr2	1285284	1285284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtgtttatgtggtgtGttgtgtggtgtgtgtgtttg	19	0	0	0	rs113659235		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1285284	A	A	1285284	1	1	59	0	1	0	0	0	0	0	0	0	14989	1392	48	4		4	SNTG2	2	1285284	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	33959	1285284	241914089	153	65776											
TPO	7173	broad.mit.edu	37	chr2	1440084	1440084	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctggatgtctcccttacaTgctgcccccaaaatgcccaa	7	15	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1440084	C	C	1440084	3	2	59	1	0	0	0	0	1	0	0	0	16534	1464	51	5	424	5	TPO	2	1440084	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	154800	1440084	241759289	154	65777											
TTC15	51112	broad.mit.edu	37	chr2	3405623	3405623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagacaagtcctaaatgccGactcagtggaacaatctttt	8	9	2	1	rs143418079		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3405623	T	T	3405623	3	4	59	1	0	0	0	0	1	0	0	0	16808	1058	37	3	1129	3	TTC15	2	3405623	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1965539	3405623	239793750	155	65778											
GREB1	9687	broad.mit.edu	37	chr2	11756808	11756808	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggagaggtcccgctcccAcgactcagcatcctcatccc	9	17	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11756808	T	T	11756808	3	4	59	1	0	0	0	0	1	0	0	0	6826	159	6	5	3560	5	GREB1	2	11756808	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	8351185	11756808	231442565	156	65779											
VSNL1	7447	broad.mit.edu	37	chr2	17815375	17815375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtggctttcatcctggaGtgtgggggagaaggtggagg	20	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17815375	T	T	17815375	1	4	59	0	1	0	0	0	0	0	0	0	17354	1044	36	3		3	VSNL1	2	17815375	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6058567	17815375	225383998	157	65780											
FKBP1B	2281	broad.mit.edu	37	chr2	24276806	24276806	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaagggccaaacgtgtgtGgtgcactacacaggtaagtc	13	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24276806	C	C	24276806	2	2	59	1	0	0	0	0	0	0	0	1	5964	1335	47	4		4	FKBP1B	2	24276806	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6461431	24276806	218922567	158	65781											
C2orf39	92749	broad.mit.edu	37	chr2	26644233	26644233	+	Frame_Shift_Del	DEL	C	-	-													atagatatcagagagattcaCaggagagtcgaagaagagga							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26644233	-	-	26644233	7	5	59	1	0	1	0	1	0	0	0	0	2186	477	17	0	331	0	C2orf39	2	26644233	Frame_Shift_Del	DEL	C	TCGA-17-Z028-01A-01W-0746-08	2367427	26644233	216555140	159	65782											
C2orf39	92749	broad.mit.edu	37	chr2	26644336	26644336	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgggtccggcagttctcccGaattgttggagggtgacttt	14	8	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26644336	T	T	26644336	1	4	59	0	1	0	0	0	0	0	0	0	2186	1073	37	3		3	C2orf39	2	26644336	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	103	26644336	216555037	160	65783											
AGBL5	60509	broad.mit.edu	37	chr2	27282185	27282185	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaagaattcccccagctttCcttttcatggcagtcggcct	8	13	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27282185	G	G	27282185	3	3	59	1	0	0	0	0	1	0	0	0	378	855	30	4	2040	4	AGBL5	2	27282185	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	637849	27282185	215917188	161	65784											
TCF23	150921	broad.mit.edu	37	chr2	27375463	27375463	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaaggtgtcagggagggaTgctggagaaggctgggtttt	21	3	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27375463	A	A	27375463	1	1	59	0	1	0	0	0	0	0	0	0	15814	1479	51	5		5	TCF23	2	27375463	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	93278	27375463	215823910	162	65785											
CAD	790	broad.mit.edu	37	chr2	27460509	27460509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttctgccccgccctatgGgcccaggccactggtgccag	11	18	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27460509	T	T	27460509	1	4	59	0	1	0	0	0	0	0	0	0	2591	1247	43	2		2	CAD	2	27460509	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	85046	27460509	215738864	163	65786											
ZNF512	84450	broad.mit.edu	37	chr2	27824139	27824139	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgagaaataaaggagacaTagatgaaagcatttgagtcg	11	4	0	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27824139	C	C	27824139	1	2	59	0	1	0	0	0	0	0	0	0	18083	1421	49	5		5	ZNF512	2	27824139	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	363630	27824139	215375234	164	65787											
PLB1	151056	broad.mit.edu	37	chr2	28828816	28828816	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccctttggaccaatatgGtaaaataagtggggtgttcc	12	7	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28828816	T	T	28828816	5	4	59	1	0	0	0	0	0	0	1	0	12119	1275	44	3	3257	3	PLB1	2	28828816	Splice_Site	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1004677	28828816	214370557	165	65788											
LTBP1	4052	broad.mit.edu	37	chr2	33359884	33359884	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaccacactggccgcatcaAggtggtctttactccgagca	9	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33359884	T	T	33359884	3	4	59	1	0	0	0	0	1	0	0	0	9160	72	3	5	1131	5	LTBP1	2	33359884	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	4531068	33359884	209839489	166	65789											
CRIM1	51232	broad.mit.edu	37	chr2	36692018	36692018	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaggattctggaaatgtAatagcagattgcatgtagct	12	4	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36692018	T	T	36692018	1	4	59	0	1	0	0	0	0	0	0	0	3905	377	13	5		5	CRIM1	2	36692018	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3332134	36692018	206507355	167	65790											
SLC8A1	6546	broad.mit.edu	37	chr2	40387815	40387815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgccatggaagccctttgGtgctttgccatagaccaagt	10	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40387815	A	A	40387815	1	1	59	0	1	0	0	0	0	0	0	0	14820	1276	44	4		4	SLC8A1	2	40387815	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3695797	40387815	202811558	168	65791											
SLC8A1	6546	broad.mit.edu	37	chr2	40656449	40656449	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaatcctagccatttcTcgcctagcttcttcatcatc	4	14	5	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656449	A	A	40656449	2	1	59	1	0	0	0	0	0	0	0	1	14820	1538	54	5		5	SLC8A1	2	40656449	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	268634	40656449	202542924	169	65792											
RHOQ	23433	broad.mit.edu	37	chr2	46793057	46793057	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggtgccacagaagtgtGgagcatggcaatgcttaagc	14	7	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46793057	T	T	46793057	1	4	59	0	1	0	0	0	0	0	0	0	13451	1363	47	2		2	RHOQ	2	46793057	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6136608	46793057	196406316	170	65793											
LHCGR	3973	broad.mit.edu	37	chr2	48919068	48919068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaaaccaagattaaaggaGgtaagtgacttgtccaaggt	11	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48919068	T	T	48919068	1	4	59	0	1	0	0	0	0	0	0	0	8834	1015	35	2		2	LHCGR	2	48919068	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2126011	48919068	194280305	171	65794											
LHCGR	3973	broad.mit.edu	37	chr2	48958239	48958239	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttgtattacaaagataaAaatatgtgagtatcctaaac	5	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48958239	G	G	48958239	1	3	59	0	1	0	0	0	0	0	0	0	8834	29	1	5		5	LHCGR	2	48958239	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	39171	48958239	194241134	172	65795											
NRXN1	9378	broad.mit.edu	37	chr2	50699546	50699546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccttgaaagccttctttgGcatgtacaagttttggtaag	10	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50699546	T	T	50699546	3	4	59	1	0	0	0	0	1	0	0	0	10760	1203	42	3	1684	3	NRXN1	2	50699546	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1741307	50699546	192499827	173	65796											
NRXN1	9378	broad.mit.edu	37	chr2	50850776	50850776	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggaaaacagatgatacaTacataagtaaacaaatacac	6	6	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50850776	A	A	50850776	1	1	59	0	1	0	0	0	0	0	0	0	10760	1421	49	5		5	NRXN1	2	50850776	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	151230	50850776	192348597	174	65797											
NRXN1	9378	broad.mit.edu	37	chr2	50861444	50861445	+	Intron	DNP	GG	TT	TT													ttatgaagttatagaacataGgagtacgggctatgaaatta							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50861445	TT	TT	50861444	1	4	59	0	1	0	0	0	0	0	0	0	10760	1015	35	2		2	NRXN1	2	50861444	Intron	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	10668	50861444	192337929	175	65798											
EHBP1	23301	broad.mit.edu	37	chr2	63272278	63272278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggccctggtgaacaagcgcGatgcgctcgtcagggacctg	15	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63272278	T	T	63272278	3	4	59	1	0	0	0	0	1	0	0	0	5015	1058	37	3	3658	3	EHBP1	2	63272278	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	12410834	63272278	179927095	176	65799											
PNO1	56902	broad.mit.edu	37	chr2	68385364	68385364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgttgaagctgcggtggGgctgttctgccgtgatgctc	16	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68385364	T	T	68385364	1	4	59	0	1	0	0	0	0	0	0	0	12256	1247	43	2		2	PNO1	2	68385364	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5113086	68385364	174814009	177	65800											
ALMS1	7840	broad.mit.edu	37	chr2	73635924	73635924	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttgataagcagcacaAgaaattctgatttagctatg	7	5	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73635924	G	G	73635924	1	3	59	0	1	0	0	0	0	0	0	0	535	87	3	5		5	ALMS1	2	73635924	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5250560	73635924	169563449	178	65801											
STAMBP	10617	broad.mit.edu	37	chr2	74077294	74077294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaggctgcagagttctGgggttggtctctgcatctgt	14	10	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74077294	T	T	74077294	1	4	59	0	1	0	0	0	0	0	0	0	15368	1363	47	2		2	STAMBP	2	74077294	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	441370	74077294	169122079	179	65802											
DCTN1	1639	broad.mit.edu	37	chr2	74596201	74596201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcccaggcagggctccCtcagacccacacactttcct	6	18	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74596201	A	A	74596201	1	1	59	0	1	0	0	0	0	0	0	0	4339	696	24	2		2	DCTN1	2	74596201	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	518907	74596201	168603172	180	65803											
KDM3A	55818	broad.mit.edu	37	chr2	86707321	86707321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaaaaaccgactcttgGtgcagtgctccagcagaatc	11	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86707321	T	T	86707321	3	4	59	1	0	0	0	0	1	0	0	0	8196	1261	44	3	2406	3	KDM3A	2	86707321	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	12111120	86707321	156492052	181	65804											
RMND5A	64795	broad.mit.edu	37	chr2	87016655	87016655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctcagatctcggtttcCcaccacttggacagcccttg	8	17	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87016655	A	A	87016655	1	1	59	0	1	0	0	0	0	0	0	0	13508	638	22	2		2	RMND5A	2	87016655	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	309334	87016655	156182718	182	65805											
RMND5A	64795	broad.mit.edu	37	chr2	87896571	87896571	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacgaaggaagggagggaggGagggagggaggaaggaagga	24	1	0	0	rs112335412		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87896571	A	A	87896571	1	1	59	0	1	0	0	0	0	0	0	0	13508	1189	41	4		4	RMND5A	2	87896571	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	879916	87896571	155302802	183	65806											
EIF2AK3	9451	broad.mit.edu	37	chr2	88889990	88889990	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactgttttctgtggctcctCtggcagcttctacaatgtct	8	12	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88889990	A	A	88889990	3	1	59	1	0	0	0	0	1	0	0	0	5038	913	32	3	2262	3	EIF2AK3	2	88889990	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	993419	88889990	154309383	184	65807											
SNRNP200	23020	broad.mit.edu	37	chr2	96953036	96953036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggattccaagtccccagacCaagggccagcctgtacttca	9	14	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96953036	A	A	96953036	1	1	59	0	1	0	0	0	0	0	0	0	14966	609	21	2		2	SNRNP200	2	96953036	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	8063046	96953036	146246337	185	65808											
ZAP70	7535	broad.mit.edu	37	chr2	98353331	98353331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgggagctagggggtgCtgtgagcagaggagggggag	25	3	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98353331	A	A	98353331	1	1	59	0	1	0	0	0	0	0	0	0	17641	812	28	3		3	ZAP70	2	98353331	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1400295	98353331	144846042	186	65809											
EIF5B	9669	broad.mit.edu	37	chr2	99988158	99988158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctggattggatgattGggaagctatggccagtgatg	17	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99988158	T	T	99988158	3	4	59	1	0	0	0	0	1	0	0	0	5086	1357	47	2	1551	2	EIF5B	2	99988158	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1634827	99988158	143211215	187	65810											
MAP4K4	9448	broad.mit.edu	37	chr2	102486715	102486715	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaacaggatctccttgactCcagagattaaggcctttcac	7	11	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102486715	A	A	102486715	1	1	59	0	1	0	0	0	0	0	0	0	9354	870	30	3		3	MAP4K4	2	102486715	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2498557	102486715	140712658	188	65811											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105885840	105885840	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccatcaggaatgggcagagGagctgcactgaccaggtgtc	14	11	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105885840	A	A	105885840	2	1	59	1	0	0	0	0	0	0	0	1	15947	1161	41	4		4	TGFBRAP1	2	105885840	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3399125	105885840	137313533	189	65812											
RANBP2	5903	broad.mit.edu	37	chr2	109383270	109383270	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatcattggataacgactaCgatgaacctgaagcctctct	7	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109383270	T	T	109383270	3	4	59	1	0	0	0	0	1	0	0	0	13136	536	19	4	6353	4	RANBP2	2	109383270	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3497430	109383270	133816103	190	65813											
CCDC138	165055	broad.mit.edu	37	chr2	109455614	109455614	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatactgtgcctttgtAtttattttccatcattttat	3	6	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109455614	G	G	109455614	1	3	59	0	1	0	0	0	0	0	0	0	2798	464	16	5		5	CCDC138	2	109455614	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	72344	109455614	133743759	191	65814											
NPHP1	4867	broad.mit.edu	37	chr2	110883158	110883158	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacatgattagaataggCaagcaaacaccaggtactgc	10	8	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110883158	A	A	110883158	1	1	59	0	1	0	0	0	0	0	0	0	10674	725	25	3		3	NPHP1	2	110883158	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1427544	110883158	132316215	192	65815											
MERTK	10461	broad.mit.edu	37	chr2	112740432	112740432	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagccccatcagtagcAcctttaaatgtcactgtgtt	7	10	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112740432	T	T	112740432	2	4	59	1	0	0	0	0	0	0	0	1	9572	146	6	5		5	MERTK	2	112740432	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1857274	112740432	130458941	193	65816											
SMPD4	55627	broad.mit.edu	37	chr2	130934013	130934013	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccattgtttccatcacaTgcccctaaaaaacaaccact	3	15	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130934013	C	C	130934013	1	2	59	0	1	0	0	0	0	0	0	0	14921	1479	51	5		5	SMPD4	2	130934013	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	18193581	130934013	112265360	194	65817											
THSD7B	80731	broad.mit.edu	37	chr2	137912858	137912858	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattgcttacctagtctggcAgttggtcagcctaggaatgg	12	8	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137912858	T	T	137912858	1	4	59	0	1	0	0	0	0	0	0	0	16003	203	7	5		5	THSD7B	2	137912858	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6978845	137912858	105286515	195	65818											
LRP1B	53353	broad.mit.edu	37	chr2	141135677	141135677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccttgccgcacttattGgactgaataataataattac	6	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141135677	T	T	141135677	1	4	59	0	1	0	0	0	0	0	0	0	9042	1363	47	2		2	LRP1B	2	141135677	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3222819	141135677	102063696	196	65819											
LRP1B	53353	broad.mit.edu	37	chr2	141283652	141283652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagagatgagaaaagttaaCttcatttgaggaaatagata	9	2	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141283652	A	A	141283652	1	1	59	0	1	0	0	0	0	0	0	0	9042	580	20	3		3	LRP1B	2	141283652	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	147975	141283652	101915721	197	65820											
LRP1B	53353	broad.mit.edu	37	chr2	141441493	141441493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccgcggcttgcccccCtggatgttgtgggctacgtg	15	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141441493	A	A	141441493	1	1	59	0	1	0	0	0	0	0	0	0	9042	696	24	2		2	LRP1B	2	141441493	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	157841	141441493	101757880	198	65821											
LRP1B	53353	broad.mit.edu	37	chr2	141607711	141607711	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacccagttccgttaataaaAgctcgtttaatggtttgtgt	8	7	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141607711	T	T	141607711	2	4	59	1	0	0	0	0	0	0	0	1	9042	59	3	5		5	LRP1B	2	141607711	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	166218	141607711	101591662	199	65822											
KIF5C	3800	broad.mit.edu	37	chr2	149829990	149829990	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaaagagaagtacgatgagGagatctccagtctctacaga	11	7	2	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149829990	C	C	149829990	3	2	59	1	0	0	0	0	1	0	0	0	8377	1175	41	4	1226	4	KIF5C	2	149829990	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	8222279	149829990	93369383	200	65823											
GALNT13	114805	broad.mit.edu	37	chr2	154801055	154801056	+	Frame_Shift_Del	DEL	GA	-	-													gtggttctagccacttcgctGatgtgggttcttgttgatgt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154801056	-	-	154801055	7	5	59	1	0	1	0	1	0	0	0	0	6273	1277	45	0	47	0	GALNT13	2	154801055	Frame_Shift_Del	DEL	GA	TCGA-17-Z028-01A-01W-0746-08	4971065	154801055	88398318	201	65824											
ERMN	57471	broad.mit.edu	37	chr2	158178306	158178306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctcccactgatgccctGtagcaaaatcaattggtaga	7	11	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158178306	T	T	158178306	1	4	59	0	1	0	0	0	0	0	0	0	5277	1392	48	3		3	ERMN	2	158178306	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3377251	158178306	85021067	202	65825											
CYTIP	9595	broad.mit.edu	37	chr2	158275081	158275081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagagatctgtactccacCcatttttgtttcaaagtttg	7	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158275081	A	A	158275081	3	1	59	1	0	0	0	0	1	0	0	0	4240	624	22	2	520	2	CYTIP	2	158275081	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	96775	158275081	84924292	203	65826											
TANK	10010	broad.mit.edu	37	chr2	162061320	162061320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggtagacattgcttctGcagaaagcagcatttaaatg	9	7	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162061320	T	T	162061320	1	4	59	0	1	0	0	0	0	0	0	0	15665	1319	46	3		3	TANK	2	162061320	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3786239	162061320	81138053	204	65827											
KCNH7	90134	broad.mit.edu	37	chr2	163696183	163696183	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgagaaggccaaagattgCgagcgactagtacaaaagaa	12	6	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163696183	G	G	163696183	1	3	59	0	1	0	0	0	0	0	0	0	8107	783	27	4		4	KCNH7	2	163696183	5'Flank	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1634863	163696183	79503190	205	65828											
SCN3A	6328	broad.mit.edu	37	chr2	165947017	165947017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataagagactttggagggGtttgatgccataaacctgtc	11	7	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165947017	T	T	165947017	3	4	59	1	0	0	0	0	1	0	0	0	14031	1252	44	3	360	3	SCN3A	2	165947017	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2250834	165947017	77252356	206	65829											
TTC21B	79809	broad.mit.edu	37	chr2	166799852	166799852	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgctttcaaaacgtgtccCtgtaaaatgaataattctat	5	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166799852	G	G	166799852	5	3	59	1	0	0	0	0	0	0	1	0	16814	695	24	4	3621	4	TTC21B	2	166799852	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	852835	166799852	76399521	207	65830											
XIRP2	129446	broad.mit.edu	37	chr2	168101434	168101434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaatttggacagcataCaaggagaagaagtgaaggaa	12	4	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168101434	A	A	168101434	3	1	59	1	0	0	0	0	1	0	0	0	17557	479	17	3	3562	3	XIRP2	2	168101434	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1301582	168101434	75097939	208	65831											
C2orf77	129881	broad.mit.edu	37	chr2	170531214	170531214	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattttttatctgattttatCttactctttcggaattcaat	3	7	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170531214	G	G	170531214	3	3	59	1	0	0	0	0	1	0	0	0	2216	912	32	4	1148	4	C2orf77	2	170531214	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2429780	170531214	72668159	209	65832											
MYO3B	140469	broad.mit.edu	37	chr2	171034773	171034773	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatccaatctctcataaGccggattcagaaaataggtc	8	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171034773	T	T	171034773	1	4	59	0	1	0	0	0	0	0	0	0	10171	986	34	3		3	MYO3B	2	171034773	5'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	503559	171034773	72164600	210	65833											
MYO3B	140469	broad.mit.edu	37	chr2	171458602	171458602	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatggccttccacctctctGagcacttcttagaaaactct	5	14	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171458602	T	T	171458602	1	4	59	0	1	0	0	0	0	0	0	0	10171	1305	45	3		3	MYO3B	2	171458602	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	423829	171458602	71740771	211	65834											
DCAF17	80067	broad.mit.edu	37	chr2	172314344	172314344	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcctcaaggtgataaattAtaatgaggttttaatgctag	9	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172314344	G	G	172314344	1	3	59	0	1	0	0	0	0	0	0	0	4302	464	16	5		5	DCAF17	2	172314344	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	855742	172314344	70885029	212	65835											
PDE11A	50940	broad.mit.edu	37	chr2	178635368	178635368	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagcatggcagtgaatgccAgcttgctgtgaacagaacag	12	9	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178635368	T	T	178635368	1	4	59	0	1	0	0	0	0	0	0	0	11725	203	7	5		5	PDE11A	2	178635368	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6321024	178635368	64564005	213	65836											
TTN	7273	broad.mit.edu	37	chr2	179470391	179470391	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccagtcaagtgtgatagtGgactttgtcctttcagtgta	10	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179470391	A	A	179470391	2	1	59	1	0	0	0	0	0	0	0	1	16861	1335	47	4		4	TTN	2	179470391	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	835023	179470391	63728982	214	65837											
TTN	7273	broad.mit.edu	37	chr2	179493929	179493929	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagaaaggcaaagacagagGaagagacattagaaagagca	13	4	0	6			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179493929	A	A	179493929	1	1	59	0	1	0	0	0	0	0	0	0	16861	1189	41	4		4	TTN	2	179493929	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	23538	179493929	63705444	215	65838											
TTN	7273	broad.mit.edu	37	chr2	179522282	179522282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagggcactttcttttcaaGgacaacttctttgggagcct	10	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179522282	T	T	179522282	1	4	59	0	1	0	0	0	0	0	0	0	16861	1015	35	2		2	TTN	2	179522282	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	28353	179522282	63677091	216	65839											
CCDC141	285025	broad.mit.edu	37	chr2	179710525	179710525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagttggagaacagtgcCatacactaactacttggaag	11	7	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179710525	A	A	179710525	1	1	59	0	1	0	0	0	0	0	0	0	2801	609	21	2		2	CCDC141	2	179710525	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	188243	179710525	63488848	217	65840											
ZNF804A	91752	broad.mit.edu	37	chr2	185800734	185800734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccaagttggggatcaagCccaggggattcacagacaca	11	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185800734	A	A	185800734	3	1	59	1	0	0	0	0	1	0	0	0	18299	739	26	3	625	3	ZNF804A	2	185800734	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6090209	185800734	57398639	218	65841											
HIBCH	26275	broad.mit.edu	37	chr2	191136791	191136791	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taattcctccttccttaagcCtcagcttaaatataacttcc	2	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191136791	T	T	191136791	1	4	59	0	1	0	0	0	0	0	0	0	7167	696	24	4		4	HIBCH	2	191136791	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5336057	191136791	52062582	219	65842											
DNAH7	56171	broad.mit.edu	37	chr2	196774825	196774825	+	Frame_Shift_Del	DEL	C	-	-													aacacattgtttggctacagCttttgccaaatccttggtag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196774825	-	-	196774825	7	5	59	1	0	1	0	1	0	0	0	0	4646	797	28	0	8208	0	DNAH7	2	196774825	Frame_Shift_Del	DEL	C	TCGA-17-Z028-01A-01W-0746-08	5638034	196774825	46424548	220	65843											
BOLL	66037	broad.mit.edu	37	chr2	198621115	198621115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaataaatgttaacatgagGtagttatagatcaattactt	7	3	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198621115	T	T	198621115	1	4	59	0	1	0	0	0	0	0	0	0	1495	1276	44	3		3	BOLL	2	198621115	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1846290	198621115	44578258	221	65844											
PLCL1	5334	broad.mit.edu	37	chr2	198949933	198949933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgaagaagctgaaatGtctcgaaggatgtcggtaga	14	4	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198949933	T	T	198949933	3	4	59	1	0	0	0	0	1	0	0	0	12134	1377	48	3	1698	3	PLCL1	2	198949933	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	328818	198949933	44249440	222	65845											
NRP2	8828	broad.mit.edu	37	chr2	206641178	206641178	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaaaacctcccactacacCaacggggcccctctggcggt	8	17	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206641178	T	T	206641178	1	4	59	0	1	0	0	0	0	0	0	0	10756	581	21	4		4	NRP2	2	206641178	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7691245	206641178	36558195	223	65846											
ADAM23	8745	broad.mit.edu	37	chr2	207395809	207395809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatactatttttagtgaGgagaaatttattaaaatata	6	1	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207395809	T	T	207395809	1	4	59	0	1	0	0	0	0	0	0	0	245	1015	35	2		2	ADAM23	2	207395809	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	754631	207395809	35803564	224	65847											
ADAM23	8745	broad.mit.edu	37	chr2	207424573	207424573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctaattatgaccccgtGttctctcacctcccccttcc	6	17	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207424573	T	T	207424573	1	4	59	0	1	0	0	0	0	0	0	0	245	1392	48	3		3	ADAM23	2	207424573	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	28764	207424573	35774800	225	65848											
ERBB4	2066	broad.mit.edu	37	chr2	212286761	212286761	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taggtatctttgagggtctcGagccatccttgaaaactcag	10	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212286761	C	C	212286761	3	2	59	1	0	0	0	0	1	0	0	0	5251	1066	37	4	1011	4	ERBB4	2	212286761	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4862188	212286761	30912612	226	65849											
CCDC108	255101	broad.mit.edu	37	chr2	219900484	219900484	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtcttcgtcctccaccAccaagaaaataaaagacaag	7	11	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219900484	T	T	219900484	1	4	59	0	1	0	0	0	0	0	0	0	2769	174	6	5		5	CCDC108	2	219900484	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	7613723	219900484	23298889	227	65850											
PAX3	5077	broad.mit.edu	37	chr2	223086091	223086091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctccatcttgcacggcGgttgctaaaccagacctatg	8	14	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223086091	T	T	223086091	3	4	59	1	0	0	0	0	1	0	0	0	11574	1116	39	1	757	1	PAX3	2	223086091	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3185607	223086091	20113282	228	65851											
SPHKAP	80309	broad.mit.edu	37	chr2	228886677	228886677	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagatatctggcagccaAgggcactaaaagtggagaga	13	7	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228886677	G	G	228886677	2	3	59	1	0	0	0	0	0	0	0	1	15166	59	3	5		5	SPHKAP	2	228886677	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5800586	228886677	14312696	229	65852											
SP140	11262	broad.mit.edu	37	chr2	231174839	231174839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcagagtgccggcttGtgtctagatggggaaagagc	15	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231174839	A	A	231174839	1	1	59	0	1	0	0	0	0	0	0	0	15076	1392	48	4		4	SP140	2	231174839	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2288162	231174839	12024534	230	65853											
NMUR1	10316	broad.mit.edu	37	chr2	232392702	232392702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacacacacacacacacaCacacacacgagactagagga	6	15	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232392702	A	A	232392702	1	1	59	0	1	0	0	0	0	0	0	0	10601	493	17	3		3	NMUR1	2	232392702	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1217863	232392702	10806671	231	65854											
HDAC4	9759	broad.mit.edu	37	chr2	240097899	240097899	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcctccctccctctgccCggccttctgcgcccgcactc	8	24	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240097899	T	T	240097899	1	4	59	0	1	0	0	0	0	0	0	0	7076	667	23	4		4	HDAC4	2	240097899	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7705197	240097899	3101474	232	65855											
MYEOV2	150678	broad.mit.edu	37	chr2	241069409	241069409	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgcagtgcgggaaccatGgaggactgctggcttgtcct	15	11	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241069409	A	A	241069409	2	1	59	1	0	0	0	0	0	0	0	1	10120	1335	47	4		4	MYEOV2	2	241069409	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	971510	241069409	2129964	233	65856											
CHL1	10752	broad.mit.edu	37	chr3	424303	424304	+	Missense_Mutation	DNP	GG	TT	TT													tcatagccgtgaacgaagtaGggagaagtcagcctagccag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	424304	TT	TT	424303	3	4	59	1	0	0	0	0	1	0	0	0	3380	1000	35	2	2187	2	CHL1	3	424303	Missense_Mutation	DNP	GG	TCGA-17-Z028-01A-01W-0746-08		424303	197598127	234	65857											
CAV3	859	broad.mit.edu	37	chr3	8787262	8787262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcacctacagctttgaCggcgtgtggaaggtgagcta	16	8	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8787262	A	A	8787262	3	1	59	1	0	0	0	0	1	0	0	0	2721	535	19	3	171	3	CAV3	3	8787262	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	8362959	8787262	189235168	235	65858											
SRGAP3	9901	broad.mit.edu	37	chr3	9057434	9057434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgagtggaaacaagagaCgagatgatatttcagcttgg	12	6	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9057434	T	T	9057434	1	4	59	0	1	0	0	0	0	0	0	0	15265	551	19	4		4	SRGAP3	3	9057434	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	270172	9057434	188964996	236	65859											
TSEN2	80746	broad.mit.edu	37	chr3	12571270	12571270	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtattttccagttattctgtCattatcgagctagttgatga	8	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12571270	T	T	12571270	2	4	59	1	0	0	0	0	0	0	0	1	16737	813	29	4		4	TSEN2	3	12571270	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3513836	12571270	185451160	237	65860											
C3orf20	84077	broad.mit.edu	37	chr3	14756870	14756870	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctatgtagtccacaagtGgagctggacttccaggacag	14	9	0	0	rs151168843		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14756870	A	A	14756870	4	1	59	1	0	0	0	0	0	1	0	0	2235	1357	47	4	1414	4	C3orf20	3	14756870	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2185600	14756870	183265560	238	65861											
HACL1	26061	broad.mit.edu	37	chr3	15621483	15621483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccttccccataggggtgGgcaaaaatggcagtttatat	10	10	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15621483	T	T	15621483	3	4	59	1	0	0	0	0	1	0	0	0	7007	1232	43	2	1035	2	HACL1	3	15621483	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	864613	15621483	182400947	239	65862											
ZNF385D	79750	broad.mit.edu	37	chr3	21467010	21467010	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagttgcgtttccgagttgaCgtgcacatcacagatttcac	9	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21467010	G	G	21467010	3	3	59	1	0	0	0	0	1	0	0	0	18004	536	19	4	373	4	ZNF385D	3	21467010	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5845527	21467010	176555420	240	65863											
ZNF385D	79750	broad.mit.edu	37	chr3	21552355	21552355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagatcattgcttaacctGttttgtcagagctggtattg	9	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21552355	T	T	21552355	3	4	59	1	0	0	0	0	1	0	0	0	18004	1377	48	3	770	3	ZNF385D	3	21552355	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	85345	21552355	176470075	241	65864											
UBP1	7342	broad.mit.edu	37	chr3	33438574	33438574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagagccgaattccatcggCtgcaccacaaatttgaacta	7	11	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33438574	A	A	33438574	3	1	59	1	0	0	0	0	1	0	0	0	17021	797	28	3	408	3	UBP1	3	33438574	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	11886219	33438574	164583856	242	65865											
CLASP2	23122	broad.mit.edu	37	chr3	33663466	33663466	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagagctgttaaggaattTtttaaaaatcatacagattg	7	3	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33663466	C	C	33663466	1	2	59	0	1	0	0	0	0	0	0	0	3486	1856	64	5		5	CLASP2	3	33663466	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	224892	33663466	164358964	243	65866											
C3orf39	84892	broad.mit.edu	37	chr3	43121364	43121364	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcagccacacctcgtacttCacctccctcaccttcaggta	5	18	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43121364	G	G	43121364	2	3	59	1	0	0	0	0	0	0	0	1	2251	813	29	4		4	C3orf39	3	43121364	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9457898	43121364	154901066	244	65867											
KIF9	64147	broad.mit.edu	37	chr3	47278048	47278048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcttgaggtctttgagCttgaggatcagcaggaattc	12	7	3	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47278048	A	A	47278048	3	1	59	1	0	0	0	0	1	0	0	0	8380	796	28	3	402	3	KIF9	3	47278048	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4156684	47278048	150744382	245	65868											
ARIH2	10425	broad.mit.edu	37	chr3	49017947	49017947	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggtatctaccacttcactCatcttatccctggtccagtg	6	13	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49017947	T	T	49017947	1	4	59	0	1	0	0	0	0	0	0	0	926	841	29	4		4	ARIH2	3	49017947	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1739899	49017947	149004483	246	65869											
NISCH	11188	broad.mit.edu	37	chr3	52511764	52511764	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggccaggggttgtaagggCaggggttgctgtcttcgctt	17	7	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52511764	T	T	52511764	1	4	59	0	1	0	0	0	0	0	0	0	10527	725	25	4		4	NISCH	3	52511764	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3493817	52511764	145510666	247	65870											
PRICKLE2	166336	broad.mit.edu	37	chr3	64132470	64132470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtcacccagagactaccCcctttctatctgttttcaag	5	15	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64132470	A	A	64132470	1	1	59	0	1	0	0	0	0	0	0	0	12593	638	22	2		2	PRICKLE2	3	64132470	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	11620706	64132470	133889960	248	65871											
ARL6IP5	10550	broad.mit.edu	37	chr3	69153634	69153634	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgtttatccatgcatcGttgagacttcggaacctcaa	9	9	1	2	rs142221565	byFrequency;by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69153634	A	A	69153634	2	1	59	1	0	0	0	0	0	0	0	1	948	1132	40	4		4	ARL6IP5	3	69153634	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5021164	69153634	128868796	249	65872											
SHQ1	55164	broad.mit.edu	37	chr3	72893552	72893552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcacttccattttctaCaattcttccaggaagggtta	6	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72893552	A	A	72893552	3	1	59	1	0	0	0	0	1	0	0	0	14405	478	17	3	1607	3	SHQ1	3	72893552	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3739918	72893552	125128878	250	65873											
ROBO1	6091	broad.mit.edu	37	chr3	78710149	78710149	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaacaaatatactgcaatGcatggaaatcaaacgcttca	5	9	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78710149	A	A	78710149	1	1	59	0	1	0	0	0	0	0	0	0	13624	1334	46	4		4	ROBO1	3	78710149	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5816597	78710149	119312281	251	65874											
ROBO1	6091	broad.mit.edu	37	chr3	79174643	79174643	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcatcgttatcagaggtGgggattggcgtcccgtggtc	15	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79174643	T	T	79174643	2	4	59	1	0	0	0	0	0	0	0	1	13624	1335	47	2		2	ROBO1	3	79174643	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	464494	79174643	118847787	252	65875											
ZNF654	55279	broad.mit.edu	37	chr3	88188515	88188515	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtaaggcatgcccaggctCatcagaaaaaaggcagtttt	10	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88188515	T	T	88188515	3	4	59	1	0	0	0	0	1	0	0	0	18194	826	29	4	57	4	ZNF654	3	88188515	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9013872	88188515	109833915	253	65876											
GABRR3	200959	broad.mit.edu	37	chr3	97744292	97744292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggtgattgtaaaagcCttctttttttgttttaaact	8	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97744292	A	A	97744292	1	1	59	0	1	0	0	0	0	0	0	0	6238	696	24	2		2	GABRR3	3	97744292	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9555777	97744292	100278138	254	65877											
NFKBIZ	64332	broad.mit.edu	37	chr3	101576069	101576070	+	Intron	INS	-	T	T													ttctgtacaccctctcaaagINStttttgagctcctttcatga					rs6806934		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101576070	T	T	101576069	6	5	59	0	1	1	1	0	0	0	0	0	10478	1044	36	0		0	NFKBIZ	3	101576069	Intron	INS	-	TCGA-17-Z028-01A-01W-0746-08	3831777	101576069	96446361	255	65878											
CBLB	868	broad.mit.edu	37	chr3	105464725	105464725	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggagaatttttcatctttgGatatatcacataatattact	5	5	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105464725	C	C	105464725	1	2	59	0	1	0	0	0	0	0	0	0	2727	1189	41	4		4	CBLB	3	105464725	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3888656	105464725	92557705	256	65879											
DZIP3	9666	broad.mit.edu	37	chr3	108406848	108406848	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttacagatttcttacggAaattgaaggatgcttatgga	9	5	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108406848	G	G	108406848	3	3	59	1	0	0	0	0	1	0	0	0	4905	247	9	5	3285	5	DZIP3	3	108406848	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2942123	108406848	89615582	257	65880											
BOC	91653	broad.mit.edu	37	chr3	112962542	112962542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagactagcattcccaccaAgtcagtatcaccttcctgct	5	15	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112962542	G	G	112962542	1	3	59	0	1	0	0	0	0	0	0	0	1487	87	3	5		5	BOC	3	112962542	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	4555694	112962542	85059888	258	65881											
GSK3B	2932	broad.mit.edu	37	chr3	119748251	119748251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctccttatttcacatggCagcaaatatcttatgttttg	5	8	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119748251	A	A	119748251	1	1	59	0	1	0	0	0	0	0	0	0	6890	725	25	3		3	GSK3B	3	119748251	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6785709	119748251	78274179	259	65882											
GPR156	165829	broad.mit.edu	37	chr3	119957037	119957037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgttcctctctaaactggCtattctggttatcagctcct	6	11	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119957037	A	A	119957037	1	1	59	0	1	0	0	0	0	0	0	0	6726	812	28	3		3	GPR156	3	119957037	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	208786	119957037	78065393	260	65883											
POLQ	10721	broad.mit.edu	37	chr3	121212997	121212997	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagggaacgaaggtggctcCggcccctgctgtcgtgaaga	15	11	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121212997	T	T	121212997	1	4	59	0	1	0	0	0	0	0	0	0	12303	667	23	4		4	POLQ	3	121212997	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1255960	121212997	76809433	261	65884											
SEMA5B	54437	broad.mit.edu	37	chr3	122679799	122679799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccgtggacttaaaaagGgttaaatggccaatttcatg	10	6	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122679799	T	T	122679799	1	4	59	0	1	0	0	0	0	0	0	0	14151	1247	43	2		2	SEMA5B	3	122679799	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1466802	122679799	75342631	262	65885											
ADCY5	111	broad.mit.edu	37	chr3	123003542	123003542	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgccccggcactccagctgGtacgtgttggcagccagcac	12	16	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123003542	C	C	123003542	4	2	59	1	0	0	0	0	0	1	0	0	297	1256	44	4	90	4	ADCY5	3	123003542	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	323743	123003542	75018888	263	65886											
PTPLB	201562	broad.mit.edu	37	chr3	123219500	123219501	+	Frame_Shift_Del	DEL	CT	-	-													atatattgtgagcagttctcCtgacactcccattgggtaca							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123219501	-	-	123219500	7	5	59	1	0	1	0	1	0	0	0	0	12883	690	24	0	228	0	PTPLB	3	123219500	Frame_Shift_Del	DEL	CT	TCGA-17-Z028-01A-01W-0746-08	215958	123219500	74802930	264	65887											
KALRN	8997	broad.mit.edu	37	chr3	124044878	124044878	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgtggcttcccgcctctctGaggccggtcattatgcctca	10	16	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124044878	A	A	124044878	3	1	59	1	0	0	0	0	1	0	0	0	8045	1291	45	4	1164	4	KALRN	3	124044878	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	825378	124044878	73977552	265	65888											
KALRN	8997	broad.mit.edu	37	chr3	124412768	124412769	+	Intron	DNP	GG	TT	TT													aagcactggctgtaagcaatGgtgatatagttctgtatcaa							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	124412769	TT	TT	124412768	1	4	59	0	1	0	0	0	0	0	0	0	8045	1363	47	2		2	KALRN	3	124412768	Intron	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	367890	124412768	73609662	266	65889											
UROC1	131669	broad.mit.edu	37	chr3	126208048	126208048	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttcgaaacattgtgactGactaaatgcatcaattttta	5	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126208048	T	T	126208048	1	4	59	0	1	0	0	0	0	0	0	0	17154	1305	45	3		3	UROC1	3	126208048	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1795280	126208048	71814382	267	65890											
RHO	6010	broad.mit.edu	37	chr3	129247966	129247966	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggtgtgggtggggtgtgcAggagcccgggagcatggagg	24	6	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129247966	T	T	129247966	1	4	59	0	1	0	0	0	0	0	0	0	13439	203	7	5		5	RHO	3	129247966	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3039918	129247966	68774464	268	65891											
COL6A6	131873	broad.mit.edu	37	chr3	130285743	130285743	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttgagatcaataaatacTccaacaagcaggatttggga	8	6	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130285743	A	A	130285743	3	1	59	1	0	0	0	0	1	0	0	0	3735	1551	54	5	1494	5	COL6A6	3	130285743	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1037777	130285743	67736687	269	65892											
ESYT3	83850	broad.mit.edu	37	chr3	138191065	138191065	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaatatttggaacaccAtatgtattactggaaatgga	8	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138191065	G	G	138191065	1	3	59	0	1	0	0	0	0	0	0	0	5308	232	8	5		5	ESYT3	3	138191065	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	7905322	138191065	59831365	270	65893											
FAIM	55179	broad.mit.edu	37	chr3	138351858	138351858	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctgtcagtagtgggaagcgGaaagaagggattattcatac	14	5	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138351858	C	C	138351858	2	2	59	1	0	0	0	0	0	0	0	1	5421	1161	41	4		4	FAIM	3	138351858	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	160793	138351858	59670572	271	65894											
XRN1	54464	broad.mit.edu	37	chr3	142123763	142123763	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaccttgtacaacatcgTtctatggcagggaacttttc	7	10	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142123763	C	C	142123763	2	2	59	1	0	0	0	0	0	0	0	1	17586	1722	60	5		5	XRN1	3	142123763	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3771905	142123763	55898667	272	65895											
SLC9A9	285195	broad.mit.edu	37	chr3	143140229	143140229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggctacagtaagcaaaaCagcgttgtactggtacaaaa	9	7	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143140229	A	A	143140229	1	1	59	0	1	0	0	0	0	0	0	0	14835	493	17	3		3	SLC9A9	3	143140229	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1016466	143140229	54882201	273	65896											
WWTR1	25937	broad.mit.edu	37	chr3	149374755	149374755	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgtcgtaggactgctggcgGaggtgcgcgtgctgctgcgc	18	11	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149374755	A	A	149374755	2	1	59	1	0	0	0	0	0	0	0	1	17544	1161	41	4		4	WWTR1	3	149374755	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6234526	149374755	48647675	274	65897											
CLRN1	7401	broad.mit.edu	37	chr3	150644579	150644579	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgtcattctctgcttTttccttggtgctttctggag	9	9	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150644579	C	C	150644579	1	2	59	0	1	0	0	0	0	0	0	0	3589	1856	64	5		5	CLRN1	3	150644579	3'UTR	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1269824	150644579	47377851	275	65898											
P2RY12	64805	broad.mit.edu	37	chr3	151056493	151056493	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggatttgaaagaaaatcctCatcgccaggccatttgtgat	9	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151056493	A	A	151056493	3	1	59	1	0	0	0	0	1	0	0	0	11443	826	29	3	891	3	P2RY12	3	151056493	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	411914	151056493	46965937	276	65899											
MME	4311	broad.mit.edu	37	chr3	154889820	154889820	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttaacataaaatgttaaTtacttggtggcatgatcttt	6	4	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154889820	C	C	154889820	1	2	59	0	1	0	0	0	0	0	0	0	9738	1508	52	5		5	MME	3	154889820	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3833327	154889820	43132610	277	65900											
PLCH1	23007	broad.mit.edu	37	chr3	155241685	155241685	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtcatgcctgcaacttaCataatggagcttgaatttgc	9	8	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155241685	A	A	155241685	5	1	59	1	0	0	0	0	0	0	1	0	12132	492	17	3	3717	3	PLCH1	3	155241685	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	351865	155241685	42780745	278	65901											
GMPS	8833	broad.mit.edu	37	chr3	155615689	155615689	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tataaaaattaacagagattCttcactgattgttccttaaa	4	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155615689	G	G	155615689	1	3	59	0	1	0	0	0	0	0	0	0	6562	928	32	4		4	GMPS	3	155615689	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	374004	155615689	42406741	279	65902											
RSRC1	51319	broad.mit.edu	37	chr3	158178688	158178688	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcactttgaatataggcatAaaataagtacaaaaattgta	5	4	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158178688	T	T	158178688	1	4	59	0	1	0	0	0	0	0	0	0	13825	377	13	5		5	RSRC1	3	158178688	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2562999	158178688	39843742	280	65903											
SI	6476	broad.mit.edu	37	chr3	164704960	164704960	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatcccaaaacagagaaccCtgtgccatctgattatcatc	5	13	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164704960	T	T	164704960	2	4	59	1	0	0	0	0	0	0	0	1	14410	680	24	4		4	SI	3	164704960	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6526272	164704960	33317470	281	65904											
SI	6476	broad.mit.edu	37	chr3	164748519	164748519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgttctccatacacagccaCgttgtgtgcacttttgttca	7	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164748519	A	A	164748519	3	1	59	1	0	0	0	0	1	0	0	0	14410	536	19	3	2706	3	SI	3	164748519	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	43559	164748519	33273911	282	65905											
SI	6476	broad.mit.edu	37	chr3	164777880	164777880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttagcattaataaccaaGgttaatgtgcctcttatttt	5	6	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164777880	T	T	164777880	1	4	59	0	1	0	0	0	0	0	0	0	14410	1015	35	2		2	SI	3	164777880	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	29361	164777880	33244550	283	65906											
BCHE	590	broad.mit.edu	37	chr3	165503989	165503989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcgacattgttgagcaCgtagtttcgtcattattctt	8	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165503989	A	A	165503989	3	1	59	1	0	0	0	0	1	0	0	0	1363	536	19	3	188	3	BCHE	3	165503989	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	726109	165503989	32518441	284	65907											
SLC7A14	57709	broad.mit.edu	37	chr3	170214316	170214316	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctgcagcgggccaagcagGacatggcgcagcagctgcgt	15	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170214316	T	T	170214316	1	4	59	0	1	0	0	0	0	0	0	0	14810	1189	41	3		3	SLC7A14	3	170214316	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4710327	170214316	27808114	285	65908											
NCEH1	57552	broad.mit.edu	37	chr3	172351586	172351586	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcctgtggtctgtacaacAggcttgtagttctttgtgaa	11	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172351586	T	T	172351586	2	4	59	1	0	0	0	0	0	0	0	1	10310	175	7	5		5	NCEH1	3	172351586	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2137270	172351586	25670844	286	65909											
SPATA16	83893	broad.mit.edu	37	chr3	172834930	172834930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagtgctgttctgaactGtcctgctgccaaggcgtatt	10	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172834930	T	T	172834930	3	4	59	1	0	0	0	0	1	0	0	0	15117	1386	48	3	1157	3	SPATA16	3	172834930	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	483344	172834930	25187500	287	65910											
ACTL6A	86	broad.mit.edu	37	chr3	179291295	179291295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcacgtttctctagttGttttttttttttcttttttt	3	5	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179291295	T	T	179291295	1	4	59	0	1	0	0	0	0	0	0	0	198	1392	48	3		3	ACTL6A	3	179291295	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6456365	179291295	18731135	288	65911											
USP13	8975	broad.mit.edu	37	chr3	179463225	179463225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatattacgtgctaaggagGggttttcttttttctttttt	8	4	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179463225	T	T	179463225	1	4	59	0	1	0	0	0	0	0	0	0	17170	1247	43	2		2	USP13	3	179463225	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	171930	179463225	18559205	289	65912											
MCCC1	56922	broad.mit.edu	37	chr3	182763143	182763143	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaaagtgctgggactaCaggcttgagccaccgcaccc	11	15	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182763143	G	G	182763143	1	3	59	0	1	0	0	0	0	0	0	0	9467	493	17	4		4	MCCC1	3	182763143	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3299918	182763143	15259287	290	65913											
ETV5	2119	broad.mit.edu	37	chr3	185783743	185783743	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgaatccctgagggggcgGgggagctgcagggacaatag	18	7	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185783743	C	C	185783743	3	2	59	1	0	0	0	0	1	0	0	0	5324	1232	43	4	787	4	ETV5	3	185783743	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3020600	185783743	12238687	291	65914											
LPP	4026	broad.mit.edu	37	chr3	188124213	188124213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttgtgaattcacagcgtGggtgtcataggctactaaaa	11	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188124213	T	T	188124213	1	4	59	0	1	0	0	0	0	0	0	0	9010	1363	47	2		2	LPP	3	188124213	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2340470	188124213	9898217	292	65915											
LEPREL1	55214	broad.mit.edu	37	chr3	189691579	189691579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcagcctcccaaagtgCtgggattacaggcgtgagcc	12	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189691579	T	T	189691579	1	4	59	0	1	0	0	0	0	0	0	0	8802	812	28	4		4	LEPREL1	3	189691579	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1567366	189691579	8330851	293	65916											
CLDN16	10686	broad.mit.edu	37	chr3	190127677	190127677	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagttctacttatttttatAtttctttcaaacagatgttg	5	5	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190127677	T	T	190127677	1	4	59	0	1	0	0	0	0	0	0	0	3508	464	16	5		5	CLDN16	3	190127677	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	436098	190127677	7894753	294	65917											
ATP13A5	344905	broad.mit.edu	37	chr3	192997142	192997142	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcatgccagatgtgcaaatGaatgccacttacctccattc	7	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192997142	A	A	192997142	1	1	59	0	1	0	0	0	0	0	0	0	1131	1305	45	4		4	ATP13A5	3	192997142	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2869465	192997142	5025288	295	65918											
ATP13A5	344905	broad.mit.edu	37	chr3	193081241	193081241	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcaatcaaccaaatacCtaccaagtggtacaaaactt	5	11	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193081241	T	T	193081241	1	4	59	0	1	0	0	0	0	0	0	0	1131	696	24	4		4	ATP13A5	3	193081241	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	84099	193081241	4941189	296	65919											
RNF168	165918	broad.mit.edu	37	chr3	196198808	196198808	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagaatttggcatctttcttCtattaactgactgcttcaac	5	9	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196198808	T	T	196198808	3	4	59	1	0	0	0	0	1	0	0	0	13570	913	32	4	121	4	RNF168	3	196198808	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3117567	196198808	1823622	297	65920											
LMLN	89782	broad.mit.edu	37	chr3	197701875	197701875	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attacatgtgctatgcctctGagagataatccttatgtttt	7	7	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197701875	T	T	197701875	1	4	59	0	1	0	0	0	0	0	0	0	8921	1305	45	3		3	LMLN	3	197701875	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1503067	197701875	320555	298	65921											
ZNF595	152687	broad.mit.edu	37	chr4	60050	60050	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagccaaacccccaggtaGgtgagactgaatgaaggaga	13	9	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60050	A	A	60050	1	1	59	0	1	0	0	0	0	0	0	0	18152	1015	35	4		4	ZNF595	4	60050	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08		60050	191094226	299	65922											
ZNF595	152687	broad.mit.edu	37	chr4	66044	66044	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagggtttcaatttctctAcattgttgacaatatatatt	5	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66044	G	G	66044	1	3	59	0	1	0	0	0	0	0	0	0	18152	406	14	5		5	ZNF595	4	66044	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5994	66044	191088232	300	65923											
HTT	3064	broad.mit.edu	37	chr4	3156033	3156033	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttaggcagccttgccttCtctaacaaaccccccttctc	4	16	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3156033	G	G	3156033	3	3	59	1	0	0	0	0	1	0	0	0	7527	913	32	4	3618	4	HTT	4	3156033	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3089989	3156033	187998243	301	65924											
CRMP1	1400	broad.mit.edu	37	chr4	5853585	5853585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggaggaggaggaagaGgagcaggaggaggaagagga	25	1	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5853585	T	T	5853585	1	4	59	0	1	0	0	0	0	0	0	0	3922	1015	35	2		2	CRMP1	4	5853585	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2697552	5853585	185300691	302	65925											
JAKMIP1	152789	broad.mit.edu	37	chr4	6055931	6055931	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggagcactggggtcccctGgtcacaggccacctgactga	14	13	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6055931	A	A	6055931	1	1	59	0	1	0	0	0	0	0	0	0	8010	1363	47	4		4	JAKMIP1	4	6055931	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	202346	6055931	185098345	303	65926											
SLC2A9	56606	broad.mit.edu	37	chr4	9910058	9910058	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttgggtatcaggtggtctCtggattaaactcagagtccc	11	8	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9910058	G	G	9910058	1	3	59	0	1	0	0	0	0	0	0	0	14666	928	32	4		4	SLC2A9	4	9910058	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3854127	9910058	181244218	304	65927											
CLNK	116449	broad.mit.edu	37	chr4	10594646	10594646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtgtgagccgcagtgccCagcctgagcatctacgctgt	12	13	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10594646	A	A	10594646	1	1	59	0	1	0	0	0	0	0	0	0	3579	609	21	2		2	CLNK	4	10594646	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	684588	10594646	180559630	305	65928											
RAB28	9364	broad.mit.edu	37	chr4	13386050	13386050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggacaaatcccactgcCgctgccttacgaaacacttt	6	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13386050	A	A	13386050	1	1	59	0	1	0	0	0	0	0	0	0	13024	667	23	1		1	RAB28	4	13386050	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2791404	13386050	177768226	306	65929											
CD38	952	broad.mit.edu	37	chr4	15780013	15780013	+	5'UTR	DEL	C	-	-													tcctgccggcctcatcttcgCccagccaaccccgcctggag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15780013	-	-	15780013	6	5	59	0	1	1	0	1	0	0	0	0	3039	754	26	0		0	CD38	4	15780013	5'UTR	DEL	C	TCGA-17-Z028-01A-01W-0746-08	2393963	15780013	175374263	307	65930											
SLIT2	9353	broad.mit.edu	37	chr4	20619043	20619043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgcattcccactcctGtgttcctcctccctgtagat	6	15	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20619043	T	T	20619043	1	4	59	0	1	0	0	0	0	0	0	0	14854	1392	48	3		3	SLIT2	4	20619043	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4839030	20619043	170535233	308	65931											
KCNIP4	80333	broad.mit.edu	37	chr4	20852135	20852135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgctcctctgggaattgtGtgaaggtaaagtcaaaaaga	11	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20852135	T	T	20852135	1	4	59	0	1	0	0	0	0	0	0	0	8112	1392	48	3		3	KCNIP4	4	20852135	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	233092	20852135	170302141	309	65932											
PPARGC1A	10891	broad.mit.edu	37	chr4	23814841	23814841	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcctctgggacactgtatTacagagactggctttttctt	8	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23814841	A	A	23814841	1	1	59	0	1	0	0	0	0	0	0	0	12396	1769	61	5		5	PPARGC1A	4	23814841	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2962706	23814841	167339435	310	65933											
DCAF4L1	285429	broad.mit.edu	37	chr4	41984273	41984273	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcacagatgctccaagctGtgcagtgctgctcccagcgt	10	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41984273	A	A	41984273	3	1	59	1	0	0	0	0	1	0	0	0	4304	1377	48	4	466	4	DCAF4L1	4	41984273	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	18169432	41984273	149170003	311	65934											
ATP8A1	10396	broad.mit.edu	37	chr4	42416849	42416849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagattgctcgagaaatcCgtagcctagtgattcttttt	8	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42416849	A	A	42416849	1	1	59	0	1	0	0	0	0	0	0	0	1196	667	23	1		1	ATP8A1	4	42416849	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	432576	42416849	148737427	312	65935											
KCTD8	386617	broad.mit.edu	37	chr4	44176901	44176901	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttttaaaatcctgaataCactttttcatttcttcttcc	1	9	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44176901	T	T	44176901	3	4	59	1	0	0	0	0	1	0	0	0	8185	478	17	4	97	4	KCTD8	4	44176901	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1760052	44176901	146977375	313	65936											
CORIN	10699	broad.mit.edu	37	chr4	47643887	47643887	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagatattactgccaagttCcacaaagccttctgagaaat	7	9	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47643887	A	A	47643887	1	1	59	0	1	0	0	0	0	0	0	0	3784	870	30	3		3	CORIN	4	47643887	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3466986	47643887	143510389	314	65937											
CORIN	10699	broad.mit.edu	37	chr4	47808936	47808936	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaccaacataggaaagcagGatcaccagcaagagaacgag	10	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47808936	T	T	47808936	2	4	59	1	0	0	0	0	0	0	0	1	3784	1164	41	3		3	CORIN	4	47808936	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	165049	47808936	143345340	315	65938											
CORIN	10699	broad.mit.edu	37	chr4	47840028	47840028	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgcttttctctcctctaCgtgtcccccggggaggcact	11	15	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47840028	A	A	47840028	1	1	59	0	1	0	0	0	0	0	0	0	3784	551	19	3		3	CORIN	4	47840028	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	31092	47840028	143314248	316	65939											
CWH43	80157	broad.mit.edu	37	chr4	49019322	49019322	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggactacggcataaagccTatgagagaaaactgggcaaa	11	7	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49019322	C	C	49019322	3	2	59	1	0	0	0	0	1	0	0	0	4106	1522	53	5	1277	5	CWH43	4	49019322	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1179294	49019322	142134954	317	65940											
PDGFRA	5156	broad.mit.edu	37	chr4	54954010	54954010	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaacactttttgttctTagtctttttcttgtaaaatg	6	6	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54954010	C	C	54954010	1	2	59	0	1	0	0	0	0	0	0	0	11755	1769	61	5		5	PDGFRA	4	54954010	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	5934688	54954010	136200266	318	65941											
PDGFRA	5156	broad.mit.edu	37	chr4	55136873	55136873	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atactattgtagctcaaaatGaagatgctgtgaagagctat	9	5	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55136873	A	A	55136873	3	1	59	1	0	0	0	0	1	0	0	0	11755	1291	45	4	1221	4	PDGFRA	4	55136873	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	182863	55136873	136017403	319	65942											
AASDH	132949	broad.mit.edu	37	chr4	57204599	57204599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacccaataaatccagaCaataaacataattatctcta	2	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57204599	A	A	57204599	3	1	59	1	0	0	0	0	1	0	0	0	22	478	17	3	34	3	AASDH	4	57204599	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2067726	57204599	133949677	320	65943											
LPHN3	23284	broad.mit.edu	37	chr4	62812910	62812910	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacactgaacattaagtgtAttaattttcttttaatgttt	4	4	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62812910	G	G	62812910	1	3	59	0	1	0	0	0	0	0	0	0	9004	464	16	5		5	LPHN3	4	62812910	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5608311	62812910	128341366	321	65944											
EPHA5	2044	broad.mit.edu	37	chr4	66439677	66439677	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagggtggttttcctgaaGcagctggctagtggcttatt	14	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66439677	A	A	66439677	1	1	59	0	1	0	0	0	0	0	0	0	5212	986	34	4		4	EPHA5	4	66439677	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3626767	66439677	124714599	322	65945											
STAP1	26228	broad.mit.edu	37	chr4	68447163	68447163	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaccaactgaagattaTgtggatgtactgaaccctat	9	7	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68447163	A	A	68447163	4	1	59	1	0	0	0	0	0	1	0	0	15370	1471	51	5	522	5	STAP1	4	68447163	Nonsense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2007486	68447163	122707113	323	65946											
UGT2B10	7365	broad.mit.edu	37	chr4	69885815	69885815	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttggaatgttgcatcgTgatattctccaactcagttt	7	8	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69885815	C	C	69885815	3	2	59	1	0	0	0	0	1	0	0	0	17082	1696	59	5	2936	5	UGT2B10	4	69885815	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1438652	69885815	121268461	324	65947											
UGT2A1	10941	broad.mit.edu	37	chr4	70505157	70505158	+	Intron	DNP	GA	TG	TG													gggattggagttgatgaataGagttgctgatgaagccagta							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	70505158	TG	TG	70505157	1	4	59	0	1	0	0	0	0	0	0	0	17079	933	33	3		3	UGT2A1	4	70505157	Intron	DNP	GA	TCGA-17-Z028-01A-01W-0746-08	619342	70505157	120649119	325	65948											
SULT1B1	27284	broad.mit.edu	37	chr4	70615457	70615457	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accttgcaattgttttcccaGaaagatttaggaagaagatc	8	7	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70615457	T	T	70615457	3	4	59	1	0	0	0	0	1	0	0	0	15494	933	33	3	553	3	SULT1B1	4	70615457	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	110300	70615457	120538819	326	65949											
HTN3	3347	broad.mit.edu	37	chr4	70897628	70897628	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaatgtggctaagtcaaTttttacacatattcttgaat	5	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70897628	C	C	70897628	1	2	59	0	1	0	0	0	0	0	0	0	7505	1508	52	5		5	HTN3	4	70897628	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	282171	70897628	120256648	327	65950											
PROL1	58503	broad.mit.edu	37	chr4	71275726	71275726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccaagttacgacttccaaCcaaactatattaagcagccc	5	13	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71275726	A	A	71275726	3	1	59	1	0	0	0	0	1	0	0	0	12660	506	18	3	687	3	PROL1	4	71275726	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	378098	71275726	119878550	328	65951											
ENAM	10117	broad.mit.edu	37	chr4	71497731	71497731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgaaaaaggtaaaaagaGggagatttgaaagtcttaaa	10	1	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71497731	T	T	71497731	1	4	59	0	1	0	0	0	0	0	0	0	5154	1015	35	2		2	ENAM	4	71497731	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	222005	71497731	119656545	329	65952											
FRAS1	80144	broad.mit.edu	37	chr4	79447788	79447788	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagagaagcctttggcCtgcactgcacatgccccaga	11	14	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79447788	A	A	79447788	2	1	59	1	0	0	0	0	0	0	0	1	6102	668	24	2		2	FRAS1	4	79447788	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7950057	79447788	111706488	330	65953											
WDFY3	23001	broad.mit.edu	37	chr4	85687333	85687333	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttaaagtcaatggcaattCcttcttttgcctaacatgaa	5	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85687333	A	A	85687333	1	1	59	0	1	0	0	0	0	0	0	0	17397	870	30	3		3	WDFY3	4	85687333	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6239545	85687333	105466943	331	65954											
SLC10A6	345274	broad.mit.edu	37	chr4	87770057	87770057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccaaactggcagagcagtCccacagcaatgccccagggt	11	15	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87770057	A	A	87770057	3	1	59	1	0	0	0	0	1	0	0	0	14491	855	30	3	945	3	SLC10A6	4	87770057	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2082724	87770057	103384219	332	65955											
PKD2	5311	broad.mit.edu	37	chr4	88940614	88940614	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattattattttaaaggtctCtggggaacaagactcatgga	9	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88940614	T	T	88940614	2	4	59	1	0	0	0	0	0	0	0	1	12061	900	32	4		4	PKD2	4	88940614	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1170557	88940614	102213662	333	65956											
GRID2	2895	broad.mit.edu	37	chr4	94416652	94416652	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatgctctgtaaagaaaagGaaagtgggactaaatcatcg	11	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94416652	T	T	94416652	1	4	59	0	1	0	0	0	0	0	0	0	6838	1189	41	3		3	GRID2	4	94416652	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5476038	94416652	96737624	334	65957											
ATOH1	474	broad.mit.edu	37	chr4	94750176	94750176	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctcccgcaaccgccgccGccgccgcagccacctgcaac	8	23	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94750176	A	A	94750176	2	1	59	1	0	0	0	0	0	0	0	1	1116	1074	38	4		4	ATOH1	4	94750176	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	333524	94750176	96404100	335	65958											
PDHA2	5161	broad.mit.edu	37	chr4	96761995	96761995	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggaatgggaacatctactGagagagcagcagccagccct	12	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761995	A	A	96761995	3	1	59	1	0	0	0	0	1	0	0	0	11759	1291	45	4	696	4	PDHA2	4	96761995	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2011819	96761995	94392281	336	65959											
C4orf17	84103	broad.mit.edu	37	chr4	100434814	100434814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccctccttgcctcctgcCctcattccctcccttccttc	2	24	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100434814	A	A	100434814	1	1	59	0	1	0	0	0	0	0	0	0	2275	638	22	2		2	C4orf17	4	100434814	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3672819	100434814	90719462	337	65960											
MTTP	4547	broad.mit.edu	37	chr4	100527854	100527854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaagccagtctcacccaaGtcttcttcaatgtatggtca	6	11	5	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100527854	T	T	100527854	1	4	59	0	1	0	0	0	0	0	0	0	10058	1044	36	3		3	MTTP	4	100527854	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	93040	100527854	90626422	338	65961											
EMCN	51705	broad.mit.edu	37	chr4	101439139	101439140	+	5'UTR	DNP	GG	TT	TT													ggacaattccctcccagcctGgcagggccttattagcaaat							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	101439140	TT	TT	101439139	1	4	59	0	1	0	0	0	0	0	0	0	5128	1363	47	2		2	EMCN	4	101439139	5'UTR	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	911285	101439139	89715137	339	65962											
NFKB1	4790	broad.mit.edu	37	chr4	103534469	103534469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctttccatttcctcctgGctcctgagtggaggaggcag	12	13	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103534469	T	T	103534469	1	4	59	0	1	0	0	0	0	0	0	0	10470	1218	42	3		3	NFKB1	4	103534469	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2095330	103534469	87619807	340	65963											
LEF1	51176	broad.mit.edu	37	chr4	108999219	108999219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaaaaaaaagaataacaGtaaaaacagttatcaaaatt	3	5	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108999219	T	T	108999219	1	4	59	0	1	0	0	0	0	0	0	0	8786	1044	36	3		3	LEF1	4	108999219	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5464750	108999219	82155057	341	65964											
AGXT2L1	64850	broad.mit.edu	37	chr4	109677671	109677671	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attaagataacatagagagaGaggacactgtgacagtctct	10	6	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109677671	C	C	109677671	1	2	59	0	1	0	0	0	0	0	0	0	406	957	33	4		4	AGXT2L1	4	109677671	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	678452	109677671	81476605	342	65965											
COL25A1	84570	broad.mit.edu	37	chr4	109820389	109820389	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcataaaacacctaatttTattatcattattaaacaaaa	0	6	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109820389	C	C	109820389	1	2	59	0	1	0	0	0	0	0	0	0	3716	1769	61	5		5	COL25A1	4	109820389	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	142718	109820389	81333887	343	65966											
COL25A1	84570	broad.mit.edu	37	chr4	110222762	110222762	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccaacacatgcacgcgcGcgcacacacacagccacacc	8	19	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110222762	A	A	110222762	1	1	59	0	1	0	0	0	0	0	0	0	3716	1102	38	4		4	COL25A1	4	110222762	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	402373	110222762	80931514	344	65967											
GAR1	54433	broad.mit.edu	37	chr4	110745618	110745618	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacagacatcaccagttgaCttctgcattaacctgcatga	7	11	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110745618	T	T	110745618	1	4	59	0	1	0	0	0	0	0	0	0	6302	580	20	4		4	GAR1	4	110745618	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	522856	110745618	80408658	345	65968											
ANK2	287	broad.mit.edu	37	chr4	114253221	114253221	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggcctcctggaaccaaattCcttgggtaggagtgacttaa	12	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114253221	G	G	114253221	3	3	59	1	0	0	0	0	1	0	0	0	621	854	30	4	3394	4	ANK2	4	114253221	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3507603	114253221	76901055	346	65969											
ANK2	287	broad.mit.edu	37	chr4	114276239	114276239	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaataccaacaattccgcctGagtgaggagacagaaaaggc	10	9	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114276239	A	A	114276239	2	1	59	1	0	0	0	0	0	0	0	1	621	1277	45	4		4	ANK2	4	114276239	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	23018	114276239	76878037	347	65970											
QRFPR	84109	broad.mit.edu	37	chr4	122254118	122254118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggaagaggatgacaaGgatgaaggtggtgtagatct	17	3	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122254118	T	T	122254118	3	4	59	1	0	0	0	0	1	0	0	0	12986	1000	35	2	652	2	QRFPR	4	122254118	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7977879	122254118	68900158	348	65971											
EXOSC9	5393	broad.mit.edu	37	chr4	122731324	122731324	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgctttttcttgtcttttaAcaaaaatccaatggggatac	6	7	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122731324	T	T	122731324	1	4	59	0	1	0	0	0	0	0	0	0	5364	58	2	5		5	EXOSC9	4	122731324	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	477206	122731324	68422952	349	65972											
KIAA1109	84162	broad.mit.edu	37	chr4	123229064	123229064	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatatagatttacagtgttGattttaattttctttctgcc	5	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123229064	T	T	123229064	1	4	59	0	1	0	0	0	0	0	0	0	8278	1305	45	3		3	KIAA1109	4	123229064	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	497740	123229064	67925212	350	65973											
SPATA5	166378	broad.mit.edu	37	chr4	123946204	123946204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtgttgtaaatagaaGcactgacaaccagagacaac	8	9	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123946204	T	T	123946204	1	4	59	0	1	0	0	0	0	0	0	0	15127	986	34	3		3	SPATA5	4	123946204	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	717140	123946204	67208072	351	65974											
FAT4	79633	broad.mit.edu	37	chr4	126239846	126239846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaaaaacagcttatcaGttgcaaatagtagctactga	8	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126239846	T	T	126239846	3	4	59	1	0	0	0	0	1	0	0	0	5749	1020	36	3	2282	3	FAT4	4	126239846	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2293642	126239846	64914430	352	65975											
SLC25A31	83447	broad.mit.edu	37	chr4	128665813	128665813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtttatgtatttatatGtttccctctgtaggtttctt	8	5	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128665813	T	T	128665813	1	4	59	0	1	0	0	0	0	0	0	0	14609	1392	48	3		3	SLC25A31	4	128665813	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2425967	128665813	62488463	353	65976											
PCDH10	57575	broad.mit.edu	37	chr4	134084246	134084246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctgctgattatcgcaGcaatctgcatgttcctggca	10	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134084246	T	T	134084246	3	4	59	1	0	0	0	0	1	0	0	0	11601	971	34	3	2986	3	PCDH10	4	134084246	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5418433	134084246	57070030	354	65977											
CLGN	1047	broad.mit.edu	37	chr4	141331872	141331872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaacatagtatgtaatgCacatacaggtaatacagata	8	5	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141331872	A	A	141331872	1	1	59	0	1	0	0	0	0	0	0	0	3556	725	25	3		3	CLGN	4	141331872	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7247626	141331872	49822404	355	65978											
LRBA	987	broad.mit.edu	37	chr4	151749751	151749751	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgatgccgtagttaaagtGctgaatgctgctggtgtgat	13	6	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151749751	A	A	151749751	2	1	59	1	0	0	0	0	0	0	0	1	9018	1310	46	4		4	LRBA	4	151749751	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	10417879	151749751	39404525	356	65979											
SH3D19	152503	broad.mit.edu	37	chr4	152049490	152049490	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgaagagcttcacaccattCtgccggaagactgttaacct	9	11	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152049490	T	T	152049490	3	4	59	1	0	0	0	0	1	0	0	0	14362	922	32	4	394	4	SH3D19	4	152049490	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	299739	152049490	39104786	357	65980											
FBXW7	55294	broad.mit.edu	37	chr4	153273505	153273505	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaacagaataccagacaTccagccacccaccaaaatta	3	13	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153273505	C	C	153273505	1	2	59	0	1	0	0	0	0	0	0	0	5826	1450	50	5		5	FBXW7	4	153273505	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1224015	153273505	37880771	358	65981											
DCHS2	54798	broad.mit.edu	37	chr4	155219121	155219121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcctggctggaatgccCtggtctgtaacttttaactg	11	9	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155219121	A	A	155219121	3	1	59	1	0	0	0	0	1	0	0	0	4321	680	24	2	3802	2	DCHS2	4	155219121	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1945616	155219121	35935155	359	65982											
DCHS2	54798	broad.mit.edu	37	chr4	155237050	155237050	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaagtctgggatgaagaaaGtgctggtgtgccatcatcca	12	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155237050	C	C	155237050	3	2	59	1	0	0	0	0	1	0	0	0	4321	1029	36	4	5049	4	DCHS2	4	155237050	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	17929	155237050	35917226	360	65983											
ACCN5	51802	broad.mit.edu	37	chr4	156787268	156787268	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccaaatgaagaaaaaaaatCtctcttttcttacttctggc	4	10	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156787268	G	G	156787268	1	3	59	0	1	0	0	0	0	0	0	0	132	928	32	4		4	ACCN5	4	156787268	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1550218	156787268	34367008	361	65984											
GRIA2	2891	broad.mit.edu	37	chr4	158283966	158283966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaggaaaagaccagtgccCtcagtctgagcaacgttgct	10	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158283966	A	A	158283966	3	1	59	1	0	0	0	0	1	0	0	0	6834	681	24	2	2599	2	GRIA2	4	158283966	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1496698	158283966	32870310	362	65985											
TLL1	7092	broad.mit.edu	37	chr4	167020606	167020606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaagaagcagactgtgGctatgactatgtggagctct	15	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167020606	T	T	167020606	3	4	59	1	0	0	0	0	1	0	0	0	16068	1203	42	3	2912	3	TLL1	4	167020606	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	8736640	167020606	24133670	363	65986											
GALNT7	51809	broad.mit.edu	37	chr4	174216973	174216973	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taactggtatgcaccacttgTagctcccatatctaaggaca	7	11	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174216973	A	A	174216973	3	1	59	1	0	0	0	0	1	0	0	0	6280	1638	57	5	962	5	GALNT7	4	174216973	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	7196367	174216973	16937303	364	65987											
ODZ3	55714	broad.mit.edu	37	chr4	183245189	183245189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtatggatgtgaaagaaCgcaggccttactgctccctg	12	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183245189	A	A	183245189	3	1	59	1	0	0	0	0	1	0	0	0	10931	536	19	3	18	3	ODZ3	4	183245189	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9028216	183245189	7909087	365	65988											
ODZ3	55714	broad.mit.edu	37	chr4	183291857	183291858	+	Intron	DNP	CA	AG	AG													gtgtctttcttgagatactaCaggctcttaaaacgcaatct							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	183291858	AG	AG	183291857	1	1	59	0	1	0	0	0	0	0	0	0	10931	493	17	3		3	ODZ3	4	183291857	Intron	DNP	CA	TCGA-17-Z028-01A-01W-0746-08	46668	183291857	7862419	366	65989											
FRG1	2483	broad.mit.edu	37	chr4	190871011	190871011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttctttttctccattgGttttgtgtgtgtgtggaggt	11	4	2	0	rs76978324		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190871011	T	T	190871011	1	4	59	0	1	0	0	0	0	0	0	0	6106	1276	44	3		3	FRG1	4	190871011	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7579154	190871011	283265	367	65990											
SDHA	6389	broad.mit.edu	37	chr5	236605	236605	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacgcctgtggggaggcCgcctgtgcctcggtacatgg	16	12	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236605	A	A	236605	2	1	59	1	0	0	0	0	0	0	0	1	14076	639	23	1		1	SDHA	5	236605	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08		236605	180678655	368	65991											
ADAMTS16	170690	broad.mit.edu	37	chr5	5146398	5146398	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaggcacgacttccacatgGatctgaggacttccagcagc	10	14	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5146398	C	C	5146398	3	2	59	1	0	0	0	0	1	0	0	0	261	1174	41	4	341	4	ADAMTS16	5	5146398	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4909793	5146398	175768862	369	65992											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239937	5239937	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaccgtggactggcccggcCggtacaaattttcgggcact	14	12	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5239937	T	T	5239937	3	4	59	1	0	0	0	0	1	0	0	0	261	643	23	4	2484	4	ADAMTS16	5	5239937	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	93539	5239937	175675323	370	65993											
PAPD7	11044	broad.mit.edu	37	chr5	6742740	6742740	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggtgacccagcgcggcgaGagtgcaggactggagtgctt	17	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6742740	C	C	6742740	1	2	59	0	1	0	0	0	0	0	0	0	11520	957	33	4		4	PAPD7	5	6742740	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1502803	6742740	174172520	371	65994											
ADCY2	108	broad.mit.edu	37	chr5	7606705	7606705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgggcacattcttgcagGctctgaagtgtgatcccctc	10	14	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7606705	T	T	7606705	1	4	59	0	1	0	0	0	0	0	0	0	294	1218	42	3		3	ADCY2	5	7606705	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	863965	7606705	173308555	372	65995											
ADCY2	108	broad.mit.edu	37	chr5	7711771	7711771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgactttaatctgatgCtatgtgttgatgaagatgcc	10	6	2	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7711771	A	A	7711771	1	1	59	0	1	0	0	0	0	0	0	0	294	812	28	3		3	ADCY2	5	7711771	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	105066	7711771	173203489	373	65996											
ADCY2	108	broad.mit.edu	37	chr5	7773317	7773317	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagcgatgtcattgtcattGataaatcattctgagagaat	8	5	4	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7773317	C	C	7773317	1	2	59	0	1	0	0	0	0	0	0	0	294	1305	45	4		4	ADCY2	5	7773317	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	61546	7773317	173141943	374	65997											
FASTKD3	79072	broad.mit.edu	37	chr5	7863200	7863200	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctaggtagaaaagtttgaTataacattactttataggca	7	5	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7863200	G	G	7863200	1	3	59	0	1	0	0	0	0	0	0	0	5744	1421	49	5		5	FASTKD3	5	7863200	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	89883	7863200	173052060	375	65998											
SEMA5A	9037	broad.mit.edu	37	chr5	9356883	9356883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaattaacattgtcatgaCaagcagctctgtgttatgag	9	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9356883	A	A	9356883	1	1	59	0	1	0	0	0	0	0	0	0	14150	493	17	3		3	SEMA5A	5	9356883	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1493683	9356883	171558377	376	65999											
MARCH6	10299	broad.mit.edu	37	chr5	10415778	10415778	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggttaaagagtggtctctCatggtatgtgtgtgtaatac	12	4	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10415778	T	T	10415778	2	4	59	1	0	0	0	0	0	0	0	1	9397	813	29	4		4	MARCH6	5	10415778	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1058895	10415778	170499482	377	66000											
MARCH6	10299	broad.mit.edu	37	chr5	10423299	10423299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagggggctgtggggagGgaggaagtagtcatcactct	20	5	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10423299	T	T	10423299	1	4	59	0	1	0	0	0	0	0	0	0	9397	1247	43	2		2	MARCH6	5	10423299	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7521	10423299	170491961	378	66001											
DAP	1611	broad.mit.edu	37	chr5	10683615	10683615	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccatgcaaaagcctcaaaCccaccgcagacactcccaga	6	17	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10683615	T	T	10683615	1	4	59	0	1	0	0	0	0	0	0	0	4266	522	18	4		4	DAP	5	10683615	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	260316	10683615	170231645	379	66002											
CTNND2	1501	broad.mit.edu	37	chr5	11018133	11018133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactgccacatgctgttgaGgacctgagatgcagccttga	12	10	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11018133	T	T	11018133	3	4	59	1	0	0	0	0	1	0	0	0	4054	1000	35	2	660	2	CTNND2	5	11018133	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	334518	11018133	169897127	380	66003											
CTNND2	1501	broad.mit.edu	37	chr5	11565000	11565000	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaagaagagaaacatcacGatttacttgcaggggcaact	11	7	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11565000	T	T	11565000	1	4	59	0	1	0	0	0	0	0	0	0	4054	1073	37	3		3	CTNND2	5	11565000	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	546867	11565000	169350260	381	66004											
DNAH5	1767	broad.mit.edu	37	chr5	13701267	13701267	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatttatgtacatgacaaTgtaactgctagtaccaaaaa	8	6	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13701267	C	C	13701267	1	2	59	0	1	0	0	0	0	0	0	0	4644	1479	51	5		5	DNAH5	5	13701267	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2136267	13701267	167213993	382	66005											
ANKH	56172	broad.mit.edu	37	chr5	14762530	14762545	+	Intron	DEL	TGGTTTCAGAGTACTG	-	-													agggcttgtcctagctccctTggtttcagagtactgtggga					rs113529202		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14762545	-	-	14762530	6	5	59	0	1	1	0	1	0	0	0	0	627	1827	63	0		0	ANKH	5	14762530	Intron	DEL	TGGTTTCAGAGTACTG	TCGA-17-Z028-01A-01W-0746-08	1061263	14762530	166152730	383	66006											
PRDM9	56979	broad.mit.edu	37	chr5	23521200	23521200	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaagaacagcaaatttactGaatgcaagtggctcagagca	9	8	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23521200	A	A	23521200	2	1	59	1	0	0	0	0	0	0	0	1	12569	1277	45	4		4	PRDM9	5	23521200	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	8758670	23521200	157394060	384	66007											
PRDM9	56979	broad.mit.edu	37	chr5	23526560	23526560	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacaaaaccaaaggtcaaGagatcaaagaaaggtccaaa	8	7	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23526560	C	C	23526560	3	2	59	1	0	0	0	0	1	0	0	0	12569	943	33	4	1401	4	PRDM9	5	23526560	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5360	23526560	157388700	385	66008											
CDH9	1007	broad.mit.edu	37	chr5	26988214	26988214	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatacaaaaattcttaccTtgcctacatattgtgtgtca	4	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26988214	A	A	26988214	3	1	59	1	0	0	0	0	1	0	0	0	3147	1623	56	5	2186	5	CDH9	5	26988214	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3461654	26988214	153927046	386	66009											
CDH6	1004	broad.mit.edu	37	chr5	31287109	31287109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggaggaaaatgatttGgagagaaggtgatgaggtca	17	1	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31287109	T	T	31287109	1	4	59	0	1	0	0	0	0	0	0	0	3144	1363	47	2		2	CDH6	5	31287109	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4298895	31287109	149628151	387	66010											
NPR3	4883	broad.mit.edu	37	chr5	32712591	32712591	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacgtccatctacagtttcGacgagaccaaagacttggat	8	11	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32712591	T	T	32712591	3	4	59	1	0	0	0	0	1	0	0	0	10691	1058	37	3	711	3	NPR3	5	32712591	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1425482	32712591	148202669	388	66011											
ADAMTS12	81792	broad.mit.edu	37	chr5	33662249	33662249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaagtgagatgaattcaGggtgggtgcatcagacattt	13	6	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33662249	T	T	33662249	1	4	59	0	1	0	0	0	0	0	0	0	257	1015	35	2		2	ADAMTS12	5	33662249	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	949658	33662249	147253011	389	66012											
ADAMTS12	81792	broad.mit.edu	37	chr5	33686504	33686504	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgctagcaggaagctgtCatgggtgagaagcgtgtaga	17	5	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33686504	T	T	33686504	1	4	59	0	1	0	0	0	0	0	0	0	257	841	29	4		4	ADAMTS12	5	33686504	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	24255	33686504	147228756	390	66013											
ADAMTS12	81792	broad.mit.edu	37	chr5	33804065	33804065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccatatcaacaatgtagGggaagaagacaagagcctag	10	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33804065	T	T	33804065	1	4	59	0	1	0	0	0	0	0	0	0	257	1247	43	2		2	ADAMTS12	5	33804065	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	117561	33804065	147111195	391	66014											
ADAMTS12	81792	broad.mit.edu	37	chr5	33811738	33811738	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatggggccatatcctcCagggccccatacgttgcagt	11	12	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33811738	T	T	33811738	1	4	59	0	1	0	0	0	0	0	0	0	257	609	21	4		4	ADAMTS12	5	33811738	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7673	33811738	147103522	392	66015											
SLC45A2	51151	broad.mit.edu	37	chr5	33947415	33947415	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcccgtccccaggccaaaCagcaaatatcccgtgaagta	7	14	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33947415	G	G	33947415	2	3	59	1	0	0	0	0	0	0	0	1	14755	465	17	4		4	SLC45A2	5	33947415	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	135677	33947415	146967845	393	66016											
AMACR	23600	broad.mit.edu	37	chr5	33989621	33989621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtcctgaggaaaaataCaatttcctaaattattatgc	5	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33989621	A	A	33989621	1	1	59	0	1	0	0	0	0	0	0	0	562	493	17	3		3	AMACR	5	33989621	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	42206	33989621	146925639	394	66017											
AMACR	23600	broad.mit.edu	37	chr5	33997334	33997334	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accagcattagcgactaattCattagcttcttgatcctttc	5	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33997334	A	A	33997334	1	1	59	0	1	0	0	0	0	0	0	0	562	841	29	3		3	AMACR	5	33997334	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7713	33997334	146917926	395	66018											
SPEF2	79925	broad.mit.edu	37	chr5	35641530	35641530	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaaatattttactgtcCagggtttcaagtgccaaact	7	7	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35641530	T	T	35641530	1	4	59	0	1	0	0	0	0	0	0	0	15153	609	21	4		4	SPEF2	5	35641530	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1644196	35641530	145273730	396	66019											
SPEF2	79925	broad.mit.edu	37	chr5	35800281	35800281	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagaaatagactaactataGagtctagaggggatgcctga	11	7	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35800281	T	T	35800281	1	4	59	0	1	0	0	0	0	0	0	0	15153	957	33	3		3	SPEF2	5	35800281	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	158751	35800281	145114979	397	66020											
SPEF2	79925	broad.mit.edu	37	chr5	35806992	35806992	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagtgttcaaagggggaAgtgaagcacaggactccaat	12	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35806992	T	T	35806992	3	4	59	1	0	0	0	0	1	0	0	0	15153	72	3	5	5353	5	SPEF2	5	35806992	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6711	35806992	145108268	398	66021											
IL7R	3575	broad.mit.edu	37	chr5	35873614	35873614	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccagcacaaagctgacactCctgcagagaaagctccaacc	7	15	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35873614	A	A	35873614	2	1	59	1	0	0	0	0	0	0	0	1	7775	842	30	3		3	IL7R	5	35873614	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	66622	35873614	145041646	399	66022											
IL7R	3575	broad.mit.edu	37	chr5	35876651	35876651	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatttaaaagggaagtctaGagttcctagtctccctcaca	8	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35876651	C	C	35876651	1	2	59	0	1	0	0	0	0	0	0	0	7775	957	33	4		4	IL7R	5	35876651	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3037	35876651	145038609	400	66023											
UGT3A2	167127	broad.mit.edu	37	chr5	36066762	36066762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgcgagtatccgggaCgcgcctgtctgggaattctc	15	11	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36066762	A	A	36066762	1	1	59	0	1	0	0	0	0	0	0	0	17090	551	19	3		3	UGT3A2	5	36066762	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	190111	36066762	144848498	401	66024											
NIPBL	25836	broad.mit.edu	37	chr5	37000950	37000950	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaagaaaaaagaaaaacaGaagaaaaggaaagcatatga	9	2	0	6			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37000950	C	C	37000950	3	2	59	1	0	0	0	0	1	0	0	0	10523	933	33	4	3580	4	NIPBL	5	37000950	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	934188	37000950	143914310	402	66025											
NIPBL	25836	broad.mit.edu	37	chr5	37027499	37027499	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggatatgactggtttgaGcaactgcttcaaaacgtgag	11	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37027499	A	A	37027499	2	1	59	1	0	0	0	0	0	0	0	1	10523	962	34	4		4	NIPBL	5	37027499	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	26549	37027499	143887761	403	66026											
C9	735	broad.mit.edu	37	chr5	39331799	39331799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagatcaaagaagccacGttccaaggtcttcggtagta	9	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39331799	T	T	39331799	3	4	59	1	0	0	0	0	1	0	0	0	2469	1136	40	3	1113	3	C9	5	39331799	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2304300	39331799	141583461	404	66027											
C7	730	broad.mit.edu	37	chr5	40981518	40981518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcagcaaatgtgtctgccGagaagcatcggagtgcgagg	16	8	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40981518	T	T	40981518	3	4	59	1	0	0	0	0	1	0	0	0	2400	1058	37	3	2445	3	C7	5	40981518	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1649719	40981518	139933742	405	66028											
C6	729	broad.mit.edu	37	chr5	41143053	41143053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgacacagtagagttgGtttccacccttgaagcactg	9	9	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41143053	T	T	41143053	3	4	59	1	0	0	0	0	1	0	0	0	2338	1252	44	3	129	3	C6	5	41143053	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	161535	41143053	139772207	406	66029											
FBXO4	26272	broad.mit.edu	37	chr5	41929975	41929975	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgagcttgatgtcttcagAggaactttgcccaacagctg	11	9	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41929975	T	T	41929975	3	4	59	1	0	0	0	0	1	0	0	0	5805	304	11	5	612	5	FBXO4	5	41929975	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	786922	41929975	138985285	407	66030											
GHR	2690	broad.mit.edu	37	chr5	42582564	42582564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctgcctatggataagagCtacccacttcaggtctcctg	9	13	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42582564	A	A	42582564	1	1	59	0	1	0	0	0	0	0	0	0	6435	812	28	3		3	GHR	5	42582564	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	652589	42582564	138332696	408	66031											
GHR	2690	broad.mit.edu	37	chr5	42689017	42689017	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaggagcctaaattcacCaagtgccgttcacctgagcg	9	12	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42689017	A	A	42689017	2	1	59	1	0	0	0	0	0	0	0	1	6435	581	21	2		2	GHR	5	42689017	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	106453	42689017	138226243	409	66032											
ISL1	3670	broad.mit.edu	37	chr5	50683308	50683308	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggccgcctccgctccCccctcccccgcacaggttgt	9	22	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50683308	G	G	50683308	1	3	59	0	1	0	0	0	0	0	0	0	7926	638	22	4		4	ISL1	5	50683308	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7994291	50683308	130231952	410	66033											
SNX18	112574	broad.mit.edu	37	chr5	53814569	53814569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagctgtgcgtggtgctgGggccctatggccccgagtgg	17	11	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53814569	T	T	53814569	3	4	59	1	0	0	0	0	1	0	0	0	15003	1232	43	2	789	2	SNX18	5	53814569	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3131261	53814569	127100691	411	66034											
SKIV2L2	23517	broad.mit.edu	37	chr5	54652278	54652278	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtgtgaggaggcacatttGaggaggttttgggagatgaa	17	3	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54652278	C	C	54652278	1	2	59	0	1	0	0	0	0	0	0	0	14473	1305	45	4		4	SKIV2L2	5	54652278	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	837709	54652278	126262982	412	66035											
PDE4D	5144	broad.mit.edu	37	chr5	59754828	59754829	+	Intron	DNP	GT	TG	TG													gtgtgtgtgtgtgtgtgtgtGttgtgtgtgtgtgtatgtgt					rs56310406		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	59754829	TG	TG	59754828	1	4	59	0	1	0	0	0	0	0	0	0	11736	1392	48	3		3	PDE4D	5	59754828	Intron	DNP	GT	TCGA-17-Z028-01A-01W-0746-08	5102550	59754828	121160432	413	66036											
ERCC8	1161	broad.mit.edu	37	chr5	60240852	60240852	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatatcgtgtcctcacaccGgctggagcactggacgtcgc	12	14	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60240852	A	A	60240852	1	1	59	0	1	0	0	0	0	0	0	0	5261	1131	39	4		4	ERCC8	5	60240852	5'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	486024	60240852	120674408	414	66037											
FLJ37543	285668	broad.mit.edu	37	chr5	60982676	60982676	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatttccatgtaccccttgGcttctctttcatatgcaaca	4	13	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60982676	A	A	60982676	1	1	59	0	1	0	0	0	0	0	0	0	5986	1218	42	4		4	FLJ37543	5	60982676	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	741824	60982676	119932584	415	66038											
MAP1B	4131	broad.mit.edu	37	chr5	71495423	71495423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaagcccgtcaggatgtcGatttatgcctcgtgtcctct	10	12	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71495423	T	T	71495423	3	4	59	1	0	0	0	0	1	0	0	0	9320	1058	37	3	6259	3	MAP1B	5	71495423	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	10512747	71495423	109419837	416	66039											
ZNF366	167465	broad.mit.edu	37	chr5	71743017	71743017	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccataaaacgaattcagctCccatttgttgtccactggac	6	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71743017	A	A	71743017	1	1	59	0	1	0	0	0	0	0	0	0	17996	870	30	3		3	ZNF366	5	71743017	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	247594	71743017	109172243	417	66040											
ZNF366	167465	broad.mit.edu	37	chr5	71756118	71756118	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcagctggctcgggtactgGaaggtcttgtcgcactcgga	15	10	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71756118	A	A	71756118	2	1	59	1	0	0	0	0	0	0	0	1	17996	1165	41	4		4	ZNF366	5	71756118	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	13101	71756118	109159142	418	66041											
ZNF366	167465	broad.mit.edu	37	chr5	71756208	71756208	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggccaaggtggggaagtcGaggccgcactccacacagat	15	11	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71756208	A	A	71756208	2	1	59	1	0	0	0	0	0	0	0	1	17996	1045	37	4		4	ZNF366	5	71756208	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	90	71756208	109159052	419	66042											
ZNF366	167465	broad.mit.edu	37	chr5	71757137	71757137	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccggggaacccatctaggtCtcctgggggaggttcatacc	13	13	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71757137	A	A	71757137	3	1	59	1	0	0	0	0	1	0	0	0	17996	913	32	3	2063	3	ZNF366	5	71757137	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	929	71757137	109158123	420	66043											
SV2C	22987	broad.mit.edu	37	chr5	75427517	75427517	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgctgtcagagctgaaCcactgaaaggaggctgtgaa	13	7	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75427517	T	T	75427517	1	4	59	0	1	0	0	0	0	0	0	0	15537	522	18	4		4	SV2C	5	75427517	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3670380	75427517	105487743	421	66044											
CMYA5	202333	broad.mit.edu	37	chr5	79028950	79028950	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccaagtgtctcctctatAgcagagcattctgttttgtc	7	11	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79028950	T	T	79028950	2	4	59	1	0	0	0	0	0	0	0	1	3622	410	15	5		5	CMYA5	5	79028950	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3601433	79028950	101886310	422	66045											
MSH3	4437	broad.mit.edu	37	chr5	80064744	80064744	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcaaggtgttattgacgaGatccgaatgcatttgcaaga	10	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80064744	T	T	80064744	3	4	59	1	0	0	0	0	1	0	0	0	9965	933	33	3	2233	3	MSH3	5	80064744	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1035794	80064744	100850516	423	66046											
ARSK	153642	broad.mit.edu	37	chr5	94927395	94927395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcaactgaagttgtcaGtgagtcagtctttcagttag	11	6	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94927395	T	T	94927395	1	4	59	0	1	0	0	0	0	0	0	0	1000	1044	36	3		3	ARSK	5	94927395	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	14862651	94927395	85987865	424	66047											
RGMB	285704	broad.mit.edu	37	chr5	98128924	98128924	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccaagagcctgcgtatcGtggaaagggagagtggccac	15	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98128924	A	A	98128924	3	1	59	1	0	0	0	0	1	0	0	0	13389	1145	40	4	918	4	RGMB	5	98128924	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3201529	98128924	82786336	425	66048											
CAMK4	814	broad.mit.edu	37	chr5	110814128	110814128	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaggcgatcagttcatgTtcaggagaattctgaattgt	11	5	4	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110814128	A	A	110814128	3	1	59	1	0	0	0	0	1	0	0	0	2631	1725	60	5	785	5	CAMK4	5	110814128	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	12685204	110814128	70101132	426	66049											
TSSK1B	83942	broad.mit.edu	37	chr5	112770252	112770252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaactcgaggaggtcgccCtggaccgcgagctccatgac	12	13	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112770252	A	A	112770252	3	1	59	1	0	0	0	0	1	0	0	0	16793	680	24	2	822	2	TSSK1B	5	112770252	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1956124	112770252	68145008	427	66050											
DMXL1	1657	broad.mit.edu	37	chr5	118479492	118479492	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttatttactcttatttgcAtatgaattgtttagtaaatt	5	3	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118479492	G	G	118479492	1	3	59	0	1	0	0	0	0	0	0	0	4634	232	8	5		5	DMXL1	5	118479492	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5709240	118479492	62435768	428	66051											
PRR16	51334	broad.mit.edu	37	chr5	120021732	120021732	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaacggacacgctgaaTagtagctcaagtggcacaac	9	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120021732	C	C	120021732	2	2	59	1	0	0	0	0	0	0	0	1	12695	1403	49	5		5	PRR16	5	120021732	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1542240	120021732	60893528	429	66052											
SNX24	28966	broad.mit.edu	37	chr5	122281795	122281795	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatcccttctaaacatgttAggaactgggtccccaaagtc	7	11	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122281795	T	T	122281795	3	4	59	1	0	0	0	0	1	0	0	0	15009	411	15	5	200	5	SNX24	5	122281795	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2260063	122281795	58633465	430	66053											
MEGF10	84466	broad.mit.edu	37	chr5	126667082	126667082	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacagcatcacctctgaatCttgaagaccctaatgtgtgt	9	10	3	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126667082	T	T	126667082	3	4	59	1	0	0	0	0	1	0	0	0	9553	913	32	4	84	4	MEGF10	5	126667082	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4385287	126667082	54248178	431	66054											
PRRC1	133619	broad.mit.edu	37	chr5	126860309	126860309	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctactcctcagccgccccttCctcctgtgaggccttcagca	7	19	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126860309	T	T	126860309	3	4	59	1	0	0	0	0	1	0	0	0	12710	855	30	4	196	4	PRRC1	5	126860309	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	193227	126860309	54054951	432	66055											
FBN2	2201	broad.mit.edu	37	chr5	127680325	127680325	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagtaaaaaacagggctacTaaatgtttcagtgatcacac	7	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127680325	A	A	127680325	1	1	59	0	1	0	0	0	0	0	0	0	5760	1537	53	5		5	FBN2	5	127680325	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	820016	127680325	53234935	433	66056											
FNIP1	96459	broad.mit.edu	37	chr5	131042107	131042107	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaaagttccaacttaccatCtaggaaataccccattttcc	3	12	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131042107	A	A	131042107	3	1	59	1	0	0	0	0	1	0	0	0	6033	913	32	3	2629	3	FNIP1	5	131042107	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3361782	131042107	49873153	434	66057											
CDC25C	995	broad.mit.edu	37	chr5	137622186	137622186	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccccatttagacactcacAttcgggggcccctctctgag	9	15	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137622186	G	G	137622186	3	3	59	1	0	0	0	0	1	0	0	0	3094	231	8	5	273	5	CDC25C	5	137622186	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6580079	137622186	43293074	435	66058											
PCDHA3	56145	broad.mit.edu	37	chr5	140181097	140181097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcggagtgcagcatccaCctggaggtgatcgtggacag	16	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140181097	A	A	140181097	3	1	59	1	0	0	0	0	1	0	0	0	11619	506	18	3	317	3	PCDHA3	5	140181097	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2558911	140181097	40734163	436	66059											
PCDHA11	56138	broad.mit.edu	37	chr5	140249750	140249750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtcgccgtgacttccttGtccctcccagtacgagagga	11	13	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140249750	T	T	140249750	3	4	59	1	0	0	0	0	1	0	0	0	11615	1368	48	3	1064	3	PCDHA11	5	140249750	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	68653	140249750	40665510	437	66060											
PCDHA11	56138	broad.mit.edu	37	chr5	140249785	140249785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggacgctcagcccagcaCggtcattgccctgatcagcg	12	14	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140249785	A	A	140249785	3	1	59	1	0	0	0	0	1	0	0	0	11615	536	19	3	1099	3	PCDHA11	5	140249785	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	35	140249785	40665475	438	66061											
PCDHAC1	56135	broad.mit.edu	37	chr5	140307154	140307154	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccatcattgtggtggacaCaaatgacaacgcgcctgtat	9	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140307154	T	T	140307154	3	4	59	1	0	0	0	0	1	0	0	0	11626	478	17	4	679	4	PCDHAC1	5	140307154	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	57369	140307154	40608106	439	66062											
PCDHB8	56128	broad.mit.edu	37	chr5	140559784	140559784	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcagggcggcctcggtGggtcgctgctcagtgcctga	18	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140559784	T	T	140559784	2	4	59	1	0	0	0	0	0	0	0	1	11642	1335	47	2		2	PCDHB8	5	140559784	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	252630	140559784	40355476	440	66063											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720008	140720008	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgctcatgtaacttactcTttcgcggaggacactgttca	8	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140720008	A	A	140720008	2	1	59	1	0	0	0	0	0	0	0	1	11648	1596	56	5		5	PCDHGA2	5	140720008	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	160224	140720008	40195252	441	66064											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725094	140725094	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgaggacactctccagggGgcgcccctgtcctccttcgt	11	17	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140725094	T	T	140725094	2	4	59	1	0	0	0	0	0	0	0	1	11649	1219	43	2		2	PCDHGA3	5	140725094	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5086	140725094	40190166	442	66065											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730252	140730252	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacttagaaatttgtgagtCagccttacccggggtaaaat	10	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140730252	T	T	140730252	3	4	59	1	0	0	0	0	1	0	0	0	11656	838	29	4	427	4	PCDHGB1	5	140730252	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5158	140730252	40185008	443	66066											
LARS	51520	broad.mit.edu	37	chr5	145509688	145509688	+	Frame_Shift_Del	DEL	C	-	-													aagttctctgtgcatcccttCcacagccaattcacggtact							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145509688	-	-	145509688	7	5	59	1	0	1	0	1	0	0	0	0	8706	864	30	0	1041	0	LARS	5	145509688	Frame_Shift_Del	DEL	C	TCGA-17-Z028-01A-01W-0746-08	4779436	145509688	35405572	444	66067											
PPP2R2B	5521	broad.mit.edu	37	chr5	146087111	146087111	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggagcagctgcagaaggcCcgggtgccagaggtggacac	17	10	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146087111	T	T	146087111	1	4	59	0	1	0	0	0	0	0	0	0	12486	638	22	4		4	PPP2R2B	5	146087111	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	577423	146087111	34828149	445	66068											
SH3TC2	79628	broad.mit.edu	37	chr5	148384189	148384189	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaggccaggtaaggactcgGaccctcccaatgagtattta	10	11	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148384189	T	T	148384189	1	4	59	0	1	0	0	0	0	0	0	0	14375	1189	41	3		3	SH3TC2	5	148384189	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2297078	148384189	32531071	446	66069											
ABLIM3	22885	broad.mit.edu	37	chr5	148610150	148610150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtgaatcaaggtgggaCatggggagagtgctggaggg	21	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148610150	A	A	148610150	1	1	59	0	1	0	0	0	0	0	0	0	96	493	17	3		3	ABLIM3	5	148610150	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	225961	148610150	32305110	447	66070											
AFAP1L1	134265	broad.mit.edu	37	chr5	148699197	148699197	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggctgctgctggtggagaTgggctccagagtcactccgg	17	11	1	2	rs140803806		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148699197	A	A	148699197	3	1	59	1	0	0	0	0	1	0	0	0	354	1464	51	5	1582	5	AFAP1L1	5	148699197	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	89047	148699197	32216063	448	66071											
C5orf62	85027	broad.mit.edu	37	chr5	150174946	150174946	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccttctaaccagggaggcAgggagagagtacgcaacagt	13	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150174946	T	T	150174946	1	4	59	0	1	0	0	0	0	0	0	0	2337	203	7	5		5	C5orf62	5	150174946	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1475749	150174946	30740314	449	66072											
ADAM19	8728	broad.mit.edu	37	chr5	156917307	156917307	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgagtcctccattgaaCcctgtcatacctgaactgtt	6	14	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156917307	T	T	156917307	1	4	59	0	1	0	0	0	0	0	0	0	240	522	18	4		4	ADAM19	5	156917307	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6742361	156917307	23997953	450	66073											
ATP10B	23120	broad.mit.edu	37	chr5	160059293	160059293	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctggatcctgggcccatCtagccgagaaggacaggcat	13	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160059293	T	T	160059293	3	4	59	1	0	0	0	0	1	0	0	0	1121	913	32	4	2978	4	ATP10B	5	160059293	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3141986	160059293	20855967	451	66074											
ATP10B	23120	broad.mit.edu	37	chr5	160059451	160059451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaacctagactttgtgtGgggggtggtaagagcatggg	18	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160059451	T	T	160059451	1	4	59	0	1	0	0	0	0	0	0	0	1121	1363	47	2		2	ATP10B	5	160059451	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	158	160059451	20855809	452	66075											
GABRA6	2559	broad.mit.edu	37	chr5	161116276	161116276	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaggcttaccatcaatgctGactgtcccatgaggctggtt	10	11	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161116276	T	T	161116276	3	4	59	1	0	0	0	0	1	0	0	0	6225	1290	45	3	481	3	GABRA6	5	161116276	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1056825	161116276	19798984	453	66076											
GABRA1	2554	broad.mit.edu	37	chr5	161324516	161324516	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccatctgctttattgcCtctgtcttaaagaatttgaa	5	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161324516	A	A	161324516	1	1	59	0	1	0	0	0	0	0	0	0	6220	696	24	2		2	GABRA1	5	161324516	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	208240	161324516	19590744	454	66077											
ODZ2	57451	broad.mit.edu	37	chr5	167642069	167642069	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccagcacacaagtactaCttggcagtggaccccgtgtc	9	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167642069	A	A	167642069	4	1	59	1	0	0	0	0	0	1	0	0	10930	576	20	3	3925	3	ODZ2	5	167642069	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6317553	167642069	13273191	455	66078											
DOCK2	1794	broad.mit.edu	37	chr5	169423205	169423205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctacccttggagctgcCcagggcgtctctgacattct	11	13	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169423205	A	A	169423205	1	1	59	0	1	0	0	0	0	0	0	0	4727	638	22	2		2	DOCK2	5	169423205	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1781136	169423205	11492055	456	66079											
STK10	6793	broad.mit.edu	37	chr5	171509831	171509831	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtcactgcctaacaagatCgggaagcccccaggaattgg	11	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171509831	T	T	171509831	1	4	59	0	1	0	0	0	0	0	0	0	15404	899	31	4		4	STK10	5	171509831	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2086626	171509831	9405429	457	66080											
STK10	6793	broad.mit.edu	37	chr5	171509904	171509905	+	Intron	DNP	CC	TT	TT													tcattcccactatgtagcttCcactgagagaacacctggag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	171509905	TT	TT	171509904	1	4	59	0	1	0	0	0	0	0	0	0	15404	870	30	4		4	STK10	5	171509904	Intron	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	73	171509904	9405356	458	66081											
C5orf41	153222	broad.mit.edu	37	chr5	172507769	172507769	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcggattcacaggatctGggcttggaaatgcctcaggt	13	8	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172507769	T	T	172507769	1	4	59	0	1	0	0	0	0	0	0	0	2323	1363	47	2		2	C5orf41	5	172507769	5'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	997865	172507769	8407491	459	66082											
TSPAN17	26262	broad.mit.edu	37	chr5	176083133	176083133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggctcaaactggtgagaGgggtaggaaccgggctgggg	19	8	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176083133	T	T	176083133	3	4	59	1	0	0	0	0	1	0	0	0	16766	1000	35	2	659	2	TSPAN17	5	176083133	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3575364	176083133	4832127	460	66083											
HK3	3101	broad.mit.edu	37	chr5	176308279	176308279	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctggccacacctccctcCccagcccgcacacccagact	5	24	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176308279	T	T	176308279	1	4	59	0	1	0	0	0	0	0	0	0	7259	638	22	4		4	HK3	5	176308279	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	225146	176308279	4606981	461	66084											
EXOC2	55770	broad.mit.edu	37	chr6	592520	592520	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtgcatgagctgaaggaTccacttgtgttgggctccaa	12	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	592520	A	A	592520	3	1	59	1	0	0	0	0	1	0	0	0	5344	1435	50	5	1705	5	EXOC2	6	592520	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08		592520	170522547	462	66085											
F13A1	2162	broad.mit.edu	37	chr6	6160250	6160250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggcgcagtggctcacgcCtgtaatcccagcactttggg	13	14	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6160250	T	T	6160250	1	4	59	0	1	0	0	0	0	0	0	0	5383	696	24	4		4	F13A1	6	6160250	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5567730	6160250	164954817	463	66086											
SLC35B3	51000	broad.mit.edu	37	chr6	8421089	8421089	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacaaacgtaagtccacttCattatgcaaatacccaccca	3	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8421089	T	T	8421089	1	4	59	0	1	0	0	0	0	0	0	0	14691	841	29	4		4	SLC35B3	6	8421089	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2260839	8421089	162693978	464	66087											
SYCP2L	221711	broad.mit.edu	37	chr6	10899007	10899007	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acattcacattacggtttatCatgctgttttaaaataatat	4	6	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10899007	A	A	10899007	1	1	59	0	1	0	0	0	0	0	0	0	15552	841	29	3		3	SYCP2L	6	10899007	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2477918	10899007	160216060	465	66088											
MRS2	57380	broad.mit.edu	37	chr6	24415199	24415199	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatttaatcagaggattcaCtgatcctgaatattctaaaa	6	6	3	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24415199	G	G	24415199	1	3	59	0	1	0	0	0	0	0	0	0	9945	580	20	4		4	MRS2	6	24415199	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	13516192	24415199	146699868	466	66089											
HIST1H4C	8364	broad.mit.edu	37	chr6	26104274	26104274	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagggcattacaaaaccGgctattcgccgtttggctcg	10	12	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26104274	T	T	26104274	2	4	59	1	0	0	0	0	0	0	0	1	7234	1103	39	1		1	HIST1H4C	6	26104274	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1689075	26104274	145010793	467	66090											
HIST1H4H	8365	broad.mit.edu	37	chr6	26285577	26285577	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accacgagtctcctcatagaTaaggccagaaattcgcttga	8	11	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26285577	A	A	26285577	3	1	59	1	0	0	0	0	1	0	0	0	7239	1406	49	5	164	5	HIST1H4H	6	26285577	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	181303	26285577	144829490	468	66091											
BTN1A1	696	broad.mit.edu	37	chr6	26501500	26501500	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acatcagttatcttgctgctCcagaagggtgggagatggca	13	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26501500	T	T	26501500	1	4	59	0	1	0	0	0	0	0	0	0	1569	870	30	4		4	BTN1A1	6	26501500	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	215923	26501500	144613567	469	66092											
HMGN4	10473	broad.mit.edu	37	chr6	26545805	26545805	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgtagaattttggcttTtttaagttatgttgttagca	9	2	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26545805	C	C	26545805	1	2	59	0	1	0	0	0	0	0	0	0	7304	1856	64	5		5	HMGN4	6	26545805	3'UTR	SNP	T	TCGA-17-Z028-01A-01W-0746-08	44305	26545805	144569262	470	66093											
VARS2	57176	broad.mit.edu	37	chr6	30882661	30882661	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgaccaccattttgggggctGaggcactcacggggcctccc	13	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30882661	A	A	30882661	2	1	59	1	0	0	0	0	0	0	0	1	17251	1277	45	4		4	VARS2	6	30882661	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4336856	30882661	140232406	471	66094											
C4A	720	broad.mit.edu	37	chr6	31964184	31964184	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggtccaggcccaagaCcctcctcccgttttcttcca	8	18	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31964184	T	T	31964184	1	4	59	0	1	0	0	0	0	0	0	0	2270	522	18	4		4	C4A	6	31964184	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1081523	31964184	139150883	472	66095											
HLA-DRB5	3127	broad.mit.edu	37	chr6	32522359	32522359	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctgatggagatgagaacAtggagcaaatgaaaatagga	13	3	0	4	rs115970154	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32522359	G	G	32522359	1	3	59	0	1	0	0	0	0	0	0	0	7276	232	8	5		5	HLA-DRB5	6	32522359	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	558175	32522359	138592708	473	66096											
DNAH8	1769	broad.mit.edu	37	chr6	38754733	38754733	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaactgtatttgcaggtaaGatagattatgttttctaatt	7	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38754733	A	A	38754733	1	1	59	0	1	0	0	0	0	0	0	0	4647	957	33	4		4	DNAH8	6	38754733	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6232374	38754733	132360334	474	66097											
DNAH8	1769	broad.mit.edu	37	chr6	38950388	38950388	+	Intron	DEL	G	-	-													gctgtaatcaggcacttgctGgggcagcctgtccctgcccc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38950388	-	-	38950388	6	5	59	0	1	1	0	1	0	0	0	0	4647	1363	47	0		0	DNAH8	6	38950388	Intron	DEL	G	TCGA-17-Z028-01A-01W-0746-08	195655	38950388	132164679	475	66098											
C6orf64	55776	broad.mit.edu	37	chr6	39078267	39078267	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcattctgctagaatgTggcaccaacccagatcttat	7	11	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39078267	C	C	39078267	1	2	59	0	1	0	0	0	0	0	0	0	2393	1711	59	5		5	C6orf64	6	39078267	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	127879	39078267	132036800	476	66099											
LRFN2	57497	broad.mit.edu	37	chr6	40439967	40439967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcagtttctcttatttGgcttcctccccagagctgga	7	14	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40439967	T	T	40439967	1	4	59	0	1	0	0	0	0	0	0	0	9025	1363	47	2		2	LRFN2	6	40439967	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1361700	40439967	130675100	477	66100											
TREM1	54210	broad.mit.edu	37	chr6	41250492	41250492	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttgcagctcggagttctAtaagcagggaaagagaatgg	14	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41250492	G	G	41250492	1	3	59	0	1	0	0	0	0	0	0	0	16594	464	16	5		5	TREM1	6	41250492	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	810525	41250492	129864575	478	66101											
SRF	6722	broad.mit.edu	37	chr6	43141555	43141555	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagagataaaaagtttgctGacctgcccatctccctcctc	7	13	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43141555	C	C	43141555	1	2	59	0	1	0	0	0	0	0	0	0	15261	1305	45	4		4	SRF	6	43141555	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1891063	43141555	127973512	479	66102			1	53		7	6	11083	N	G	9.460496e-05
SRF	6722	broad.mit.edu	37	chr6	43146516	43146516	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagtttcaacaaacaatttGagtatctcctgtggttttcc	7	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43146516	C	C	43146516	1	2	59	0	1	0	0	0	0	0	0	0	15261	1305	45	4		4	SRF	6	43146516	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4961	43146516	127968551	480	66103			1	53		7	6	11083	N	G	9.460496e-05
CUL9	23113	broad.mit.edu	37	chr6	43152183	43152183	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgatccgatggagtgtcctGaagtgtggggaagtgggcaa	17	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43152183	A	A	43152183	2	1	59	1	0	0	0	0	0	0	0	1	4094	1277	45	4		4	CUL9	6	43152183	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5667	43152183	127962884	481	66104			1	53		7	6	11083	N	G	9.460496e-05
CUL9	23113	broad.mit.edu	37	chr6	43152229	43152229	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtggaagaaggcaaagcaGagcacatcctcatgtggctg	14	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43152229	C	C	43152229	3	2	59	1	0	0	0	0	1	0	0	0	4094	943	33	4	183	4	CUL9	6	43152229	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	46	43152229	127962838	482	66105			1	53		7	6	11083	N	G	9.460496e-05
CUL9	23113	broad.mit.edu	37	chr6	43152442	43152442	+	Missense_Mutation	SNP	G	A	A													gggcggccaggcagctggcaGaaagtgggaccccaagcctc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43152442	A	A	43152442	3	1	59	1	0	0	0	0	1	0	0	0	4094	943	33	4	396	4	CUL9	6	43152442	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	213	43152442	127962625	483	66106	304	2	1	53		7	6	11083	N	G	9.460496e-05
CUL9	23113	broad.mit.edu	37	chr6	43152449	43152449	+	Missense_Mutation	SNP	G	A	A													caggcagctggcagaaagtgGgaccccaagcctcacggccg							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43152449	A	A	43152449	3	1	59	1	0	0	0	0	1	0	0	0	4094	1232	43	4	403	4	CUL9	6	43152449	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7	43152449	127962618	484	66107	304	2	1	53		7	6	11083	N	G	9.460496e-05
CUL9	23113	broad.mit.edu	37	chr6	43152637	43152637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaggctctggcagcccacGatgctggtaagagacagcca	13	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43152637	T	T	43152637	3	4	59	1	0	0	0	0	1	0	0	0	4094	1058	37	3	591	3	CUL9	6	43152637	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	188	43152637	127962430	485	66108			1	53		7	6	11083	N	G	9.460496e-05
RSPH9	221421	broad.mit.edu	37	chr6	43638529	43638529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctgtcttatctcagggtCctggagcatccagatggaga	12	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43638529	A	A	43638529	3	1	59	1	0	0	0	0	1	0	0	0	13819	855	30	3	692	3	RSPH9	6	43638529	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	485892	43638529	127476538	486	66109											
CAPN11	11131	broad.mit.edu	37	chr6	44148427	44148427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccacgagcggagggctgaCaggagggggatgaggggctg	23	7	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44148427	A	A	44148427	1	1	59	0	1	0	0	0	0	0	0	0	2650	493	17	3		3	CAPN11	6	44148427	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	509898	44148427	126966640	487	66110											
CLIC5	53405	broad.mit.edu	37	chr6	45922772	45922772	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggacaatgacgtgtgagcAgggggctgctgggagccacg	18	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45922772	G	G	45922772	1	3	59	0	1	0	0	0	0	0	0	0	3561	203	7	5		5	CLIC5	6	45922772	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1774345	45922772	125192295	488	66111											
PLA2G7	7941	broad.mit.edu	37	chr6	46680136	46680136	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattacaaggctgagtccacTaataaaactgggaacatgga	10	7	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46680136	A	A	46680136	1	1	59	0	1	0	0	0	0	0	0	0	12104	1537	53	5		5	PLA2G7	6	46680136	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	757364	46680136	124434931	489	66112											
MUT	4594	broad.mit.edu	37	chr6	49399587	49399587	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcctgttgaaagaatgtgtTtaattaataagagccactat	7	5	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49399587	A	A	49399587	1	1	59	0	1	0	0	0	0	0	0	0	10085	1856	64	5		5	MUT	6	49399587	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2719451	49399587	121715480	490	66113											
MUT	4594	broad.mit.edu	37	chr6	49409509	49409509	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattcaaggggattgtgctAacagaaaagatgaaattctg	11	4	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49409509	C	C	49409509	1	2	59	0	1	0	0	0	0	0	0	0	10085	377	13	5		5	MUT	6	49409509	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	9922	49409509	121705558	491	66114											
RHAG	6005	broad.mit.edu	37	chr6	49586980	49586980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcccaaagcagcaacgaGtaggttgatacccacactgc	11	12	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49586980	T	T	49586980	3	4	59	1	0	0	0	0	1	0	0	0	13424	1029	36	3	1012	3	RHAG	6	49586980	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	177471	49586980	121528087	492	66115											
CRISP1	167	broad.mit.edu	37	chr6	49825116	49825116	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgtttaatttccatccCtgaaagaaaaataacacaat	6	7	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49825116	A	A	49825116	5	1	59	1	0	0	0	0	0	0	1	0	3911	695	24	2		2	CRISP1	6	49825116	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	238136	49825116	121289951	493	66116											
TFAP2B	7021	broad.mit.edu	37	chr6	50808146	50808146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttgcagcctctggcaagCaaggtaggcagagttgatgg	14	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50808146	A	A	50808146	1	1	59	0	1	0	0	0	0	0	0	0	15911	725	25	3		3	TFAP2B	6	50808146	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	983030	50808146	120306921	494	66117											
COL21A1	81578	broad.mit.edu	37	chr6	55939086	55939086	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgcttcccattaaaccctAcaattttaaaaaggaatttc	3	9	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55939086	T	T	55939086	1	4	59	0	1	0	0	0	0	0	0	0	3712	406	14	5		5	COL21A1	6	55939086	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5130940	55939086	115175981	495	66118											
PRIM2	5558	broad.mit.edu	37	chr6	57420202	57420202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatctttttgctggtggagGgtcttgccttgatgttgatg	13	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57420202	T	T	57420202	1	4	59	0	1	0	0	0	0	0	0	0	12597	1247	43	2		2	PRIM2	6	57420202	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1481116	57420202	113694865	496	66119											
PRIM2	5558	broad.mit.edu	37	chr6	57480976	57480976	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggagctcgaaccctattGtgaactgtgcatgcgaggga	13	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57480976	T	T	57480976	1	4	59	0	1	0	0	0	0	0	0	0	12597	1392	48	3		3	PRIM2	6	57480976	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	60774	57480976	113634091	497	66120											
KHDRBS2	202559	broad.mit.edu	37	chr6	62900947	62900947	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctttctaaaacacagatCtgagcattccacttttctct	4	11	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62900947	A	A	62900947	1	1	59	0	1	0	0	0	0	0	0	0	8217	928	32	3		3	KHDRBS2	6	62900947	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5419971	62900947	108214120	498	66121											
EYS	346007	broad.mit.edu	37	chr6	64567627	64567627	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatccaatgctttgatgaGcatctgagacataaaacttt	7	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64567627	C	C	64567627	1	2	59	0	1	0	0	0	0	0	0	0	5375	986	34	4		4	EYS	6	64567627	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1666680	64567627	106547440	499	66122											
EYS	346007	broad.mit.edu	37	chr6	64814208	64814208	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgaaatctgatggagggaGaactaccaggaagcaggatt	13	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64814208	T	T	64814208	1	4	59	0	1	0	0	0	0	0	0	0	5375	957	33	3		3	EYS	6	64814208	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	246581	64814208	106300859	500	66123											
BAI3	577	broad.mit.edu	37	chr6	69984381	69984381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccttcctccctccctccCtccctccctttcttctttcc	0	24	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69984381	A	A	69984381	1	1	59	0	1	0	0	0	0	0	0	0	1305	696	24	2		2	BAI3	6	69984381	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5170173	69984381	101130686	501	66124											
COL19A1	1310	broad.mit.edu	37	chr6	70608991	70608992	+	Intron	DNP	GG	TT	TT													tagatatggaatacattataGgtgaatctttgatactgcaa							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	70608992	TT	TT	70608991	1	4	59	0	1	0	0	0	0	0	0	0	3708	1015	35	2		2	COL19A1	6	70608991	Intron	DNP	GG	TCGA-17-Z028-01A-01W-0746-08	624610	70608991	100506076	502	66125											
COL19A1	1310	broad.mit.edu	37	chr6	70850767	70850767	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgggaatctgagtttggccTatagggtttatccacacccc	10	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70850767	A	A	70850767	1	1	59	0	1	0	0	0	0	0	0	0	3708	1537	53	5		5	COL19A1	6	70850767	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	241776	70850767	100264300	503	66126											
COL19A1	1310	broad.mit.edu	37	chr6	70875816	70875816	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtctacgccgctgatatgtCtatatatcccttgcagggca	9	12	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70875816	A	A	70875816	1	1	59	0	1	0	0	0	0	0	0	0	3708	928	32	3		3	COL19A1	6	70875816	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	25049	70875816	100239251	504	66127											
MTO1	25821	broad.mit.edu	37	chr6	74207359	74207359	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgttgaatgagatgatgtAcacaaaagctttttgtaaat	9	3	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74207359	G	G	74207359	1	3	59	0	1	0	0	0	0	0	0	0	10047	406	14	5		5	MTO1	6	74207359	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3331543	74207359	96907708	505	66128											
COL12A1	1303	broad.mit.edu	37	chr6	75892694	75892694	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaagaattgaacaagcatAttatccacaattttagaacc	5	7	0	4	rs149154446	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75892694	T	T	75892694	1	4	59	0	1	0	0	0	0	0	0	0	3701	464	16	5		5	COL12A1	6	75892694	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1685335	75892694	95222373	506	66129											
KIAA1009	22832	broad.mit.edu	37	chr6	84856412	84856412	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggccatttcttacctctttCtgtagaatttcttctcgaac	5	11	5	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84856412	G	G	84856412	3	3	59	1	0	0	0	0	1	0	0	0	8273	912	32	4	359	4	KIAA1009	6	84856412	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	8963718	84856412	86258655	507	66130											
ZNF292	23036	broad.mit.edu	37	chr6	87965088	87965088	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaaagaactttaattctAaagaaacttttgtccctcat	5	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87965088	G	G	87965088	3	3	59	1	0	0	0	0	1	0	0	0	17952	363	13	5	1771	5	ZNF292	6	87965088	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3108676	87965088	83149979	508	66131											
ORC3L	23595	broad.mit.edu	37	chr6	88375549	88375549	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagaaatgaatgaaattatCcagtatccttttaaaaccat	5	6	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88375549	T	T	88375549	2	4	59	1	0	0	0	0	0	0	0	1	11357	845	30	4		4	ORC3L	6	88375549	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	410461	88375549	82739518	509	66132											
MDN1	23195	broad.mit.edu	37	chr6	90371106	90371106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaatcaattactgttcaCtaatgtgagttctaaccggt	8	7	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90371106	A	A	90371106	1	1	59	0	1	0	0	0	0	0	0	0	9508	580	20	3		3	MDN1	6	90371106	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1995557	90371106	80743961	510	66133											
EPHA7	2045	broad.mit.edu	37	chr6	93965714	93965714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagcaattcctctcagCattcctactaactgaatgac	5	14	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93965714	A	A	93965714	3	1	59	1	0	0	0	0	1	0	0	0	5214	710	25	3	802	3	EPHA7	6	93965714	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3594608	93965714	77149353	511	66134											
COQ3	51805	broad.mit.edu	37	chr6	99825363	99825363	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcagaagattgtcccTtttttaaaaaattcaaaaca	4	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99825363	A	A	99825363	5	1	59	1	0	0	0	0	0	0	1	0	3778	1623	56	5	740	5	COQ3	6	99825363	Splice_Site	SNP	T	TCGA-17-Z028-01A-01W-0746-08	5859649	99825363	71289704	512	66135											
PRDM13	59336	broad.mit.edu	37	chr6	100056533	100056533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaccactttcctgtgttGggttggggtggaggataaac	13	7	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100056533	T	T	100056533	1	4	59	0	1	0	0	0	0	0	0	0	12560	1363	47	2		2	PRDM13	6	100056533	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	231170	100056533	71058534	513	66136											
SIM1	6492	broad.mit.edu	37	chr6	100862014	100862014	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcataaagcaatcatggAgaaaccctgtttgtaaaaag	7	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100862014	G	G	100862014	1	3	59	0	1	0	0	0	0	0	0	0	14436	319	11	5		5	SIM1	6	100862014	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	805481	100862014	70253053	514	66137											
AIM1	202	broad.mit.edu	37	chr6	106967187	106967187	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acactgacattcgaggccaaAggaatactcctgcctctagt	8	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106967187	T	T	106967187	3	4	59	1	0	0	0	0	1	0	0	0	430	63	3	5	886	5	AIM1	6	106967187	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6105173	106967187	64147880	515	66138											
AKD1	221264	broad.mit.edu	37	chr6	109859905	109859905	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtttcttcctagcatcAatgatctttacaatttggca	6	9	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109859905	G	G	109859905	1	3	59	0	1	0	0	0	0	0	0	0	460	145	5	5		5	AKD1	6	109859905	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2892718	109859905	61255162	516	66139											
DSE	29940	broad.mit.edu	37	chr6	116758311	116758311	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactacacacagcagggccCcatcactgtctgcttcctat	6	16	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116758311	T	T	116758311	3	4	59	1	0	0	0	0	1	0	0	0	4814	623	22	4	2698	4	DSE	6	116758311	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6898406	116758311	54356756	517	66140											
DCBLD1	285761	broad.mit.edu	37	chr6	117853331	117853331	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattcattggggccactaCtataaattaccacagaaaca	5	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117853331	T	T	117853331	1	4	59	0	1	0	0	0	0	0	0	0	4313	580	20	4		4	DCBLD1	6	117853331	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1095020	117853331	53261736	518	66141											
NUS1	116150	broad.mit.edu	37	chr6	118015118	118015118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttattttggtttaaccttGtatttcttaaaactgctttt	5	5	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118015118	T	T	118015118	1	4	59	0	1	0	0	0	0	0	0	0	10872	1392	48	3		3	NUS1	6	118015118	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	161787	118015118	53099949	519	66142											
C6orf170	221322	broad.mit.edu	37	chr6	121615756	121615756	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtttcatcagctttcctAgtcttacacatttcaaagta	4	9	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121615756	G	G	121615756	2	3	59	1	0	0	0	0	0	0	0	1	2367	407	15	5		5	C6orf170	6	121615756	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3600638	121615756	49499311	520	66143											
PTPRK	5796	broad.mit.edu	37	chr6	128298010	128298010	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaagcagattttagcaatTcattactactctattaagtt	4	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128298010	A	A	128298010	1	1	59	0	1	0	0	0	0	0	0	0	12913	1798	62	5		5	PTPRK	6	128298010	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	6682254	128298010	42817057	521	66144											
LAMA2	3908	broad.mit.edu	37	chr6	129250775	129250775	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccacgatgctgacctgctCaaatatggaatagtgatgcg	10	9	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129250775	A	A	129250775	1	1	59	0	1	0	0	0	0	0	0	0	8678	841	29	3		3	LAMA2	6	129250775	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	952765	129250775	41864292	522	66145											
LAMA2	3908	broad.mit.edu	37	chr6	129805966	129805966	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggagaagcaaggagatGgtattagaaagaaactcata	12	3	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129805966	A	A	129805966	1	1	59	0	1	0	0	0	0	0	0	0	8678	1363	47	4		4	LAMA2	6	129805966	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	555191	129805966	41309101	523	66146											
MED23	9439	broad.mit.edu	37	chr6	131917629	131917629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtatggctttaaaaggaCtatttgaaataccaattagg	8	5	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131917629	A	A	131917629	1	1	59	0	1	0	0	0	0	0	0	0	9534	580	20	3		3	MED23	6	131917629	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2111663	131917629	39197438	524	66147											
GPR126	57211	broad.mit.edu	37	chr6	142741054	142741054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgttcattgtggtaatGgtgcagatctgtgggaggaa	15	5	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142741054	T	T	142741054	3	4	59	1	0	0	0	0	1	0	0	0	6705	1348	47	2	3218	2	GPR126	6	142741054	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	10823425	142741054	28374013	525	66148											
HIVEP2	3097	broad.mit.edu	37	chr6	143095280	143095280	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagtacactaggtttgGcacacgctctgctgcagtaa	9	10	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143095280	A	A	143095280	3	1	59	1	0	0	0	0	1	0	0	0	7254	1203	42	4	6768	4	HIVEP2	6	143095280	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	354226	143095280	28019787	526	66149											
GRM1	2911	broad.mit.edu	37	chr6	146720721	146720721	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaggaatgtccgcagtgCcttcaccacctctgatgttg	11	11	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146720721	T	T	146720721	3	4	59	1	0	0	0	0	1	0	0	0	6862	739	26	4	2572	4	GRM1	6	146720721	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3625441	146720721	24394346	527	66150											
SAMD5	389432	broad.mit.edu	37	chr6	147885381	147885381	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattgatagataacaagcAaaaactcttagggctgttct	7	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147885381	G	G	147885381	1	3	59	0	1	0	0	0	0	0	0	0	13934	145	5	5		5	SAMD5	6	147885381	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1164660	147885381	23229686	528	66151											
LRP11	84918	broad.mit.edu	37	chr6	150164031	150164031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaataaaatggaagagcCcatggagcgcagagccagag	12	8	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150164031	A	A	150164031	1	1	59	0	1	0	0	0	0	0	0	0	9040	638	22	2		2	LRP11	6	150164031	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2278650	150164031	20951036	529	66152											
EZR	7430	broad.mit.edu	37	chr6	159188080	159188080	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgggtcctcttattctcatCtcgggcctgggacagctcgc	12	13	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159188080	G	G	159188080	3	3	59	1	0	0	0	0	1	0	0	0	5378	913	32	4	137	4	EZR	6	159188080	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9024049	159188080	11926987	530	66153											
C6orf118	168090	broad.mit.edu	37	chr6	165714110	165714110	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggcacagggggccagtctcGggggttctgatccctcccac	14	15	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165714110	C	C	165714110	1	2	59	0	1	0	0	0	0	0	0	0	2346	1131	39	4		4	C6orf118	6	165714110	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6526030	165714110	5400957	531	66154											
TTLL2	83887	broad.mit.edu	37	chr6	167754214	167754214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttatgtttatcaggaaGggttggttcggtttgccacg	12	7	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167754214	T	T	167754214	3	4	59	1	0	0	0	0	1	0	0	0	16853	1000	35	2	836	2	TTLL2	6	167754214	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2040104	167754214	3360853	532	66155											
FRMD1	79981	broad.mit.edu	37	chr6	168465832	168465832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccacaccagctcccagGgctgtcctgagcccctggta	9	19	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168465832	T	T	168465832	1	4	59	0	1	0	0	0	0	0	0	0	6109	1247	43	2		2	FRMD1	6	168465832	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	711618	168465832	2649235	533	66156											
C6orf70	55780	broad.mit.edu	37	chr6	170158818	170158818	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttgtatttttttcacctaGatgctggggataatcatagt	9	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170158818	C	C	170158818	1	2	59	0	1	0	0	0	0	0	0	0	2394	957	33	4		4	C6orf70	6	170158818	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1692986	170158818	956249	534	66157											
PRKAR1B	5575	broad.mit.edu	37	chr7	655856	655856	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcctggccccctgtgctgGaggcagccccctggctctca	13	17	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	655856	A	A	655856	1	1	59	0	1	0	0	0	0	0	0	0	12610	1189	41	4		4	PRKAR1B	7	655856	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08		655856	158482807	535	66158											
PMS2	5395	broad.mit.edu	37	chr7	6031560	6031560	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaatttcattttattctttGaggcattagtcactagttgt	7	5	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6031560	C	C	6031560	1	2	59	0	1	0	0	0	0	0	0	0	12238	1305	45	4		4	PMS2	7	6031560	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5375704	6031560	153107103	536	66159											
DGKB	1607	broad.mit.edu	37	chr7	14620523	14620523	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatcttgctagatcattgcCagtcccaagaggcagaatcg	10	11	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14620523	G	G	14620523	3	3	59	1	0	0	0	0	1	0	0	0	4506	594	21	4	885	4	DGKB	7	14620523	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	8588963	14620523	144518140	537	66160											
TMEM195	392636	broad.mit.edu	37	chr7	15427214	15427214	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacataagataaataggaaaGattaaataccaaaagttatg	6	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15427214	C	C	15427214	1	2	59	0	1	0	0	0	0	0	0	0	16240	957	33	4		4	TMEM195	7	15427214	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	806691	15427214	143711449	538	66161											
MEOX2	4223	broad.mit.edu	37	chr7	15692479	15692479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccatgttatggatgtaCcactgtttgtttaaccattt	6	7	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15692479	A	A	15692479	1	1	59	0	1	0	0	0	0	0	0	0	9567	522	18	3		3	MEOX2	7	15692479	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	265265	15692479	143446184	539	66162											
ABCB5	340273	broad.mit.edu	37	chr7	20698688	20698688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccacttttcttctttaGgatacccccaggtattcatt	5	12	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20698688	T	T	20698688	1	4	59	0	1	0	0	0	0	0	0	0	44	1014	35	2		2	ABCB5	7	20698688	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5006209	20698688	138439975	540	66163											
DNAH11	8701	broad.mit.edu	37	chr7	21659516	21659516	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattaattccagataatagTctacatattgattatcaatt	3	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21659516	C	C	21659516	1	2	59	0	1	0	0	0	0	0	0	0	4639	1682	58	5		5	DNAH11	7	21659516	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	960828	21659516	137479147	541	66164											
DNAH11	8701	broad.mit.edu	37	chr7	21723698	21723698	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgaagagaattgaattagaGaaacagagttacagaagcta	11	3	0	6			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21723698	C	C	21723698	1	2	59	0	1	0	0	0	0	0	0	0	4639	957	33	4		4	DNAH11	7	21723698	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	64182	21723698	137414965	542	66165											
STK31	56164	broad.mit.edu	37	chr7	23883094	23883094	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgcctgccttccctacAggtccctgtgaggtatagtc	10	14	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23883094	T	T	23883094	1	4	59	0	1	0	0	0	0	0	0	0	15414	203	7	5		5	STK31	7	23883094	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2159396	23883094	135255569	543	66166											
CCDC129	223075	broad.mit.edu	37	chr7	31683378	31683378	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgcccaatgggcacctgCcatgctatacctgcccactg	8	16	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31683378	A	A	31683378	4	1	59	1	0	0	0	0	0	1	0	0	2790	747	26	3	2432	3	CCDC129	7	31683378	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7800284	31683378	127455285	544	66167											
PDE1C	5137	broad.mit.edu	37	chr7	32282597	32282597	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtcagattcaaggatacAagagatacaagggacacgtg	11	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32282597	T	T	32282597	1	4	59	0	1	0	0	0	0	0	0	0	11729	145	5	5		5	PDE1C	7	32282597	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	599219	32282597	126856066	545	66168											
BMPER	168667	broad.mit.edu	37	chr7	34085917	34085917	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttttctctcttttcttaGggaggcaggacacaatgtgt	9	7	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34085917	C	C	34085917	5	2	59	1	0	0	0	0	0	0	1	0	1474	1014	35	4	602	4	BMPER	7	34085917	Splice_Site	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1803320	34085917	125052746	546	66169											
DPY19L1	23333	broad.mit.edu	37	chr7	34982156	34982156	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccaacaaagttagaaactgGaactagaaaggaaagtccaa	9	7	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34982156	A	A	34982156	1	1	59	0	1	0	0	0	0	0	0	0	4780	1189	41	4		4	DPY19L1	7	34982156	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	896239	34982156	124156507	547	66170											
AOAH	313	broad.mit.edu	37	chr7	36616225	36616225	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgattacagtggtttcTtttccataagcgaaggtaaa	9	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36616225	A	A	36616225	4	1	59	1	0	0	0	0	0	1	0	0	728	1617	56	5	1128	5	AOAH	7	36616225	Nonsense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1634069	36616225	122522438	548	66171											
AOAH	313	broad.mit.edu	37	chr7	36763782	36763782	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaccccaagtgatcacCcggctttggaagctcccaac	8	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36763782	A	A	36763782	1	1	59	0	1	0	0	0	0	0	0	0	728	638	22	2		2	AOAH	7	36763782	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	147557	36763782	122374881	549	66172											
TXNDC3	51314	broad.mit.edu	37	chr7	37903124	37903124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgtgggcggtcatcacagCatcacttgtttcagcaaaac	9	11	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37903124	A	A	37903124	1	1	59	0	1	0	0	0	0	0	0	0	16924	725	25	3		3	TXNDC3	7	37903124	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1139342	37903124	121235539	550	66173											
VPS41	27072	broad.mit.edu	37	chr7	38916284	38916285	+	Intron	DEL	AC	-	-													agctgctttgctttaccgtaAcacactaaccagaaaactga					rs36040224		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38916285	-	-	38916284	6	5	59	0	1	1	0	1	0	0	0	0	17337	58	2	0		0	VPS41	7	38916284	Intron	DEL	AC	TCGA-17-Z028-01A-01W-0746-08	1013160	38916284	120222379	551	66174											
C7orf10	79783	broad.mit.edu	37	chr7	40193668	40193668	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcgggtgaacattggggGtctttgtgctgcagtttata	14	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40193668	A	A	40193668	1	1	59	0	1	0	0	0	0	0	0	0	2401	1276	44	4		4	C7orf10	7	40193668	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1277384	40193668	118944995	552	66175											
HECW1	23072	broad.mit.edu	37	chr7	43563333	43563333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttactaatgagagaggcgCcgaaagcaagaaccagaggg	13	8	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43563333	A	A	43563333	1	1	59	0	1	0	0	0	0	0	0	0	7109	754	26	3		3	HECW1	7	43563333	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3369665	43563333	115575330	553	66176											
HECW1	23072	broad.mit.edu	37	chr7	43581637	43581637	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaagggattttgttttTtactatggaaaatgcacata	9	3	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43581637	C	C	43581637	1	2	59	0	1	0	0	0	0	0	0	0	7109	1856	64	5		5	HECW1	7	43581637	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	18304	43581637	115557026	554	66177											
ABCA13	154664	broad.mit.edu	37	chr7	48349979	48349979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccttggaaataagtgtcaGggcattgggacagagttggt	15	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48349979	T	T	48349979	1	4	59	0	1	0	0	0	0	0	0	0	31	1015	35	2		2	ABCA13	7	48349979	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4768342	48349979	110788684	555	66178											
ABCA13	154664	broad.mit.edu	37	chr7	48356826	48356826	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggtgtggaccttcctaaAacccatattgcatggaaaaa	8	8	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48356826	C	C	48356826	3	2	59	1	0	0	0	0	1	0	0	0	31	14	1	5	9867	5	ABCA13	7	48356826	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6847	48356826	110781837	556	66179											
VWC2	375567	broad.mit.edu	37	chr7	49828098	49828098	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgtgtaagacagtgtgTatgagtgtgtgtgagtgtgg	19	1	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49828098	C	C	49828098	1	2	59	0	1	0	0	0	0	0	0	0	17370	1653	57	5		5	VWC2	7	49828098	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1471272	49828098	109310565	557	66180											
GRB10	2887	broad.mit.edu	37	chr7	50742190	50742190	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctctgcctcggggacaccTgtggctggatggaccgagga	15	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50742190	A	A	50742190	3	1	59	1	0	0	0	0	1	0	0	0	6822	1580	55	5	1535	5	GRB10	7	50742190	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	914092	50742190	108396473	558	66181											
EGFR	1956	broad.mit.edu	37	chr7	55268196	55268196	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcacatgccagcctggcctCcctgtgtcccagatcgcatt	9	16	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55268196	T	T	55268196	1	4	59	0	1	0	0	0	0	0	0	0	5007	870	30	4		4	EGFR	7	55268196	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4526006	55268196	103870467	559	66182											
LANCL2	55915	broad.mit.edu	37	chr7	55493123	55493123	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctctaccgagcttgcaaGgtgagggtggctctgttgga	14	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55493123	T	T	55493123	3	4	59	1	0	0	0	0	1	0	0	0	8693	1014	35	2	1211	2	LANCL2	7	55493123	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	224927	55493123	103645540	560	66183											
SBDS	51119	broad.mit.edu	37	chr7	66458404	66458404	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttctcctttagtcaaaaTctaaaaaaatgccaacacat	2	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66458404	C	C	66458404	3	2	59	1	0	0	0	0	1	0	0	0	13969	1449	50	5	505	5	SBDS	7	66458404	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	10965281	66458404	92680259	561	66184											
ELN	2006	broad.mit.edu	37	chr7	73474517	73474517	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgccaaagcccagctccgtGagtgcctcgcccacctttct	8	18	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73474517	T	T	73474517	1	4	59	0	1	0	0	0	0	0	0	0	5113	1305	45	3		3	ELN	7	73474517	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7016113	73474517	85664146	562	66185											
POR	5447	broad.mit.edu	37	chr7	75552589	75552589	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgcttggaagacctcattCatgaaattgccttcccaagg	8	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75552589	T	T	75552589	1	4	59	0	1	0	0	0	0	0	0	0	12352	841	29	4		4	POR	7	75552589	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2078072	75552589	83586074	563	66186											
MAGI2	9863	broad.mit.edu	37	chr7	77756547	77756547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtccgacagagggtactgCctggtgtcgggggagtgctg	18	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77756547	A	A	77756547	3	1	59	1	0	0	0	0	1	0	0	0	9283	738	26	3	993	3	MAGI2	7	77756547	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2203958	77756547	81382116	564	66187											
GNAI1	2770	broad.mit.edu	37	chr7	79846622	79846622	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctttttccatctcaggatCaaacacatatgaagaggcag	7	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79846622	A	A	79846622	4	1	59	1	0	0	0	0	0	1	0	0	6568	838	29	3	908	3	GNAI1	7	79846622	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2090075	79846622	79292041	565	66188											
HGF	3082	broad.mit.edu	37	chr7	81366033	81366033	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatggaaaatatgaggcaaAggaagaaaatcattgtggct	11	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81366033	T	T	81366033	1	4	59	0	1	0	0	0	0	0	0	0	7152	87	3	5		5	HGF	7	81366033	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1519411	81366033	77772630	566	66189											
CACNA2D1	781	broad.mit.edu	37	chr7	81634805	81634805	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgcaaagtaatacccattGgggcacagctggaaaagaaa	10	7	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81634805	A	A	81634805	2	1	59	1	0	0	0	0	0	0	0	1	2574	1335	47	4		4	CACNA2D1	7	81634805	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	268772	81634805	77503858	567	66190											
PCLO	27445	broad.mit.edu	37	chr7	82545566	82545566	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgctgatggtacaaagtTtgttgctcaaaatgagactg	10	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82545566	G	G	82545566	3	3	59	1	0	0	0	0	1	0	0	0	11677	1838	64	5	3785	5	PCLO	7	82545566	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	910761	82545566	76593097	568	66191											
ABCB1	5243	broad.mit.edu	37	chr7	87179629	87179629	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatctaccaggacgagtgaGaaaaaaacttcaaggcaatt	9	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87179629	C	C	87179629	1	2	59	0	1	0	0	0	0	0	0	0	40	957	33	4		4	ABCB1	7	87179629	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4634063	87179629	71959034	569	66192											
CDK14	5218	broad.mit.edu	37	chr7	90741857	90741857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttttgctcatgtttttagGctcagctatgtgaaccatgc	8	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90741857	C	C	90741857	3	2	59	1	0	0	0	0	1	0	0	0	3160	1217	42	4	1147	4	CDK14	7	90741857	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3562228	90741857	68396806	570	66193											
PEX1	5189	broad.mit.edu	37	chr7	92120953	92120953	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagagctcattaattctcTaacggttttgaggcacatgg	9	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92120953	C	C	92120953	1	2	59	0	1	0	0	0	0	0	0	0	11830	1537	53	5		5	PEX1	7	92120953	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1379096	92120953	67017710	571	66194											
HEPACAM2	253012	broad.mit.edu	37	chr7	92818570	92818570	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgaatgtactgtttagcCcatgaaagttcacctagtga	8	9	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92818570	A	A	92818570	1	1	59	0	1	0	0	0	0	0	0	0	7120	638	22	2		2	HEPACAM2	7	92818570	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	697617	92818570	66320093	572	66195											
PPP1R9A	55607	broad.mit.edu	37	chr7	94740708	94740708	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggagctagagaaaggttcGtgagtgctacagtgttaata	14	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94740708	C	C	94740708	1	2	59	0	1	0	0	0	0	0	0	0	12479	1160	40	4		4	PPP1R9A	7	94740708	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1922138	94740708	64397955	573	66196											
ASB4	51666	broad.mit.edu	37	chr7	95141822	95141822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttcaaaaagagaattcCttggaaaaataagtcctgga	9	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95141822	A	A	95141822	1	1	59	0	1	0	0	0	0	0	0	0	1029	696	24	2		2	ASB4	7	95141822	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	401114	95141822	63996841	574	66197											
DYNC1I1	1780	broad.mit.edu	37	chr7	95657570	95657570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggccagattgtcctctgGgacaatcgcagtcatcgaag	12	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95657570	T	T	95657570	3	4	59	1	0	0	0	0	1	0	0	0	4882	1241	43	2	1142	2	DYNC1I1	7	95657570	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	515748	95657570	63481093	575	66198											
LMTK2	22853	broad.mit.edu	37	chr7	97821992	97821992	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaggctcattgtccagcAaagaacacataaatgatctt	6	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97821992	C	C	97821992	3	2	59	1	0	0	0	0	1	0	0	0	8933	131	5	5	2257	5	LMTK2	7	97821992	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2164422	97821992	61316671	576	66199											
TRRAP	8295	broad.mit.edu	37	chr7	98560277	98560277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcagcttccagcacaGgctttggtgtgagggatgtt	12	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98560277	T	T	98560277	1	4	59	0	1	0	0	0	0	0	0	0	16726	1015	35	2		2	TRRAP	7	98560277	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	738285	98560277	60578386	577	66200											
PVRIG	79037	broad.mit.edu	37	chr7	99817788	99817788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggccaccgagctctcgtCcttcaccatccgttgtgggt	12	14	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99817788	A	A	99817788	3	1	59	1	0	0	0	0	1	0	0	0	12946	855	30	3	176	3	PVRIG	7	99817788	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1257511	99817788	59320875	578	66201											
PILRB	29990	broad.mit.edu	37	chr7	99964558	99964558	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggggagcctcagggtgcCagctgagtcccaggcccttc	17	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99964558	T	T	99964558	1	4	59	0	1	0	0	0	0	0	0	0	12021	609	21	4		4	PILRB	7	99964558	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	146770	99964558	59174105	579	66202											
FBXO24	26261	broad.mit.edu	37	chr7	100188004	100188004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttccccagaacctcccGttctccttgcctctgtcccg	5	21	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100188004	T	T	100188004	1	4	59	0	1	0	0	0	0	0	0	0	5792	1160	40	3		3	FBXO24	7	100188004	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	223446	100188004	58950659	580	66203											
DNAJC2	27000	broad.mit.edu	37	chr7	102957423	102957423	+	Silent	SNP	C	T	T													cgcatacgagcctcagcttcCtctttctcttttctgatttg							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102957423	T	T	102957423	2	4	59	1	0	0	0	0	0	0	0	1	4679	680	24	4		4	DNAJC2	7	102957423	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2769419	102957423	56181240	581	66204	305	2									
DNAJC2	27000	broad.mit.edu	37	chr7	102957425	102957425	+	Missense_Mutation	SNP	C	T	T													catacgagcctcagcttcctCtttctcttttctgatttgct							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102957425	T	T	102957425	3	4	59	1	0	0	0	0	1	0	0	0	4679	922	32	4	606	4	DNAJC2	7	102957425	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2	102957425	56181238	582	66205	305	2									
RELN	5649	broad.mit.edu	37	chr7	103136875	103136875	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaggagtatgggctagGcactcttataaatgcttttc	11	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103136875	T	T	103136875	1	4	59	0	1	0	0	0	0	0	0	0	13328	1218	42	3		3	RELN	7	103136875	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	179450	103136875	56001788	583	66206											
RELN	5649	broad.mit.edu	37	chr7	103163670	103163670	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctaatctctaagcaagaatGaagatacagtatccatcaac	5	10	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103163670	C	C	103163670	1	2	59	0	1	0	0	0	0	0	0	0	13328	1305	45	4		4	RELN	7	103163670	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	26795	103163670	55974993	584	66207											
PIK3CG	5294	broad.mit.edu	37	chr7	106508576	106508576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatggcggaggtggccagCcgcgaccccaagctctacgc	14	16	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106508576	A	A	106508576	3	1	59	1	0	0	0	0	1	0	0	0	12011	738	26	3	572	3	PIK3CG	7	106508576	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3344906	106508576	52630087	585	66208											
LAMB1	3912	broad.mit.edu	37	chr7	107580467	107580467	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagattcccaatgtttttcAgtggctctgctgcggggctc	12	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107580467	G	G	107580467	3	3	59	1	0	0	0	0	1	0	0	0	8682	188	7	5	1672	5	LAMB1	7	107580467	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1071891	107580467	51558196	586	66209											
LAMB4	22798	broad.mit.edu	37	chr7	107692543	107692543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacatttttcccttaccCgcaatgcttgcattaaggac	5	11	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107692543	A	A	107692543	2	1	59	1	0	0	0	0	0	0	0	1	8685	666	23	1		1	LAMB4	7	107692543	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	112076	107692543	51446120	587	66210											
LAMB4	22798	broad.mit.edu	37	chr7	107732893	107732893	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgctcagctgattccagCtatgaagatgctgttgctct	9	9	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107732893	T	T	107732893	1	4	59	0	1	0	0	0	0	0	0	0	8685	812	28	4		4	LAMB4	7	107732893	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	40350	107732893	51405770	588	66211											
IMMP2L	83943	broad.mit.edu	37	chr7	110978090	110978090	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagggcaacttgtgaaaggTggcaagtaggtgagacagag	16	5	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110978090	C	C	110978090	1	2	59	0	1	0	0	0	0	0	0	0	7787	1711	59	5		5	IMMP2L	7	110978090	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3245197	110978090	48160573	589	66212											
IMMP2L	83943	broad.mit.edu	37	chr7	111024331	111024331	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaggagaaaggagagaggaGaaaggagaaaggagagagga	19	0	0	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111024331	A	A	111024331	1	1	59	0	1	0	0	0	0	0	0	0	7787	957	33	4		4	IMMP2L	7	111024331	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	46241	111024331	48114332	590	66213											
KCND2	3751	broad.mit.edu	37	chr7	120166285	120166285	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattcataattcaactgatcTattttgattttgcattttag	5	5	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120166285	A	A	120166285	1	1	59	0	1	0	0	0	0	0	0	0	8089	1537	53	5		5	KCND2	7	120166285	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	9141954	120166285	38972378	591	66214											
PTPRZ1	5803	broad.mit.edu	37	chr7	121659302	121659302	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtctagtggttcttgtGggtattctcatctactggag	11	7	5	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121659302	T	T	121659302	2	4	59	1	0	0	0	0	0	0	0	1	12922	1335	47	2		2	PTPRZ1	7	121659302	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1493017	121659302	37479361	592	66215											
IRF5	3663	broad.mit.edu	37	chr7	128588438	128588438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaactggggaatcctgggGctaggcccttgccccaggct	14	12	0	0	rs71312831		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128588438	T	T	128588438	1	4	59	0	1	0	0	0	0	0	0	0	7903	1218	42	3		3	IRF5	7	128588438	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6929136	128588438	30550225	593	66216											
CPA5	93979	broad.mit.edu	37	chr7	130008321	130008321	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacgccttcagctttgagctCcgggacactgggcagtatgg	13	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130008321	A	A	130008321	2	1	59	1	0	0	0	0	0	0	0	1	3825	855	30	3		3	CPA5	7	130008321	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1419883	130008321	29130342	594	66217											
CPA5	93979	broad.mit.edu	37	chr7	130008475	130008476	+	3'UTR	DNP	CC	AT	AT													aggaggctccatccttctccCcaaggtctgtggctcctccc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	130008476	AT	AT	130008475	1	1	59	0	1	0	0	0	0	0	0	0	3825	638	22	2		2	CPA5	7	130008475	3'UTR	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	154	130008475	29130188	595	66218											
PLXNA4	91584	broad.mit.edu	37	chr7	131831476	131831476	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttctgccaaggcaaggatCaccccccgacatatgtgagg	10	12	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131831476	T	T	131831476	1	4	59	0	1	0	0	0	0	0	0	0	12217	841	29	4		4	PLXNA4	7	131831476	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1823001	131831476	27307187	596	66219											
PLXNA4	91584	broad.mit.edu	37	chr7	131888148	131888148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtcaactccacgggcaGgttgttgatctccatccctt	9	13	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131888148	T	T	131888148	3	4	59	1	0	0	0	0	1	0	0	0	12217	991	35	2	3443	2	PLXNA4	7	131888148	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	56672	131888148	27250515	597	66220											
PLXNA4	91584	broad.mit.edu	37	chr7	131947568	131947568	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagagatgctgggtctaagGggtcaaaacatcagcggact	14	8	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131947568	A	A	131947568	1	1	59	0	1	0	0	0	0	0	0	0	12217	1247	43	4		4	PLXNA4	7	131947568	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	59420	131947568	27191095	598	66221											
AKR1B10	57016	broad.mit.edu	37	chr7	134225943	134225943	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaagcttatttaagatcaCagtgaacttagtcctgttat	7	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134225943	T	T	134225943	1	4	59	0	1	0	0	0	0	0	0	0	467	493	17	4		4	AKR1B10	7	134225943	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2278375	134225943	24912720	599	66222											
CHRM2	1129	broad.mit.edu	37	chr7	136700435	136700435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgtgactgaaaactgtGttcagggagaggagaaggag	15	5	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700435	T	T	136700435	3	4	59	1	0	0	0	0	1	0	0	0	3408	1377	48	3	825	3	CHRM2	7	136700435	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2474492	136700435	22438228	600	66223											
PTN	5764	broad.mit.edu	37	chr7	137028346	137028346	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactggtctctttcttcccCtctctccactttggattttc	4	15	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137028346	A	A	137028346	1	1	59	1	0	0	0	0	0	0	0	0	12874	696	24	2		2	PTN	7	137028346	Translation_Start_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	327911	137028346	22110317	601	66224											
DGKI	9162	broad.mit.edu	37	chr7	137359458	137359458	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcttgccccacctctgagtCtgctcatgttcctcttccct	6	17	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137359458	A	A	137359458	1	1	59	0	1	0	0	0	0	0	0	0	4511	928	32	3		3	DGKI	7	137359458	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	331112	137359458	21779205	602	66225											
KIAA1549	57670	broad.mit.edu	37	chr7	138555917	138555917	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatacctctttgttgatttTattgctttccgccactcggt	6	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138555917	A	A	138555917	4	1	59	1	0	0	0	0	0	1	0	0	8314	1763	61	5	1347	5	KIAA1549	7	138555917	Nonsense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1196459	138555917	20582746	603	66226											
TTC26	79989	broad.mit.edu	37	chr7	138858534	138858534	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcatgaaagtttcactaAccatttcctcctgttaatgt	6	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138858534	T	T	138858534	1	4	59	0	1	0	0	0	0	0	0	0	16820	58	2	5		5	TTC26	7	138858534	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	302617	138858534	20280129	604	66227											
BRAF	673	broad.mit.edu	37	chr7	140434577	140434586	+	Intron	DEL	AAAAAAAAAG	-	-													atagaggcgagaatctacaaAaaaaaaaagaaaaaaaaaag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140434586	-	-	140434577	6	5	59	0	1	1	0	1	0	0	0	0	1505	29	1	0		0	BRAF	7	140434577	Intron	DEL	AAAAAAAAAG	TCGA-17-Z028-01A-01W-0746-08	1576043	140434577	18704086	605	66228											
PRSS1	5644	broad.mit.edu	37	chr7	142459927	142459927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccatcctcacaatttcCagaacaaaccatgcccctta	2	18	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142459927	A	A	142459927	1	1	59	0	1	0	0	0	0	0	0	0	12720	609	21	2		2	PRSS1	7	142459927	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2025350	142459927	16678736	606	66229											
PRSS1	5644	broad.mit.edu	37	chr7	142460072	142460072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaaaatcaagagacaggaCaaatggagaacttgatatga	9	6	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142460072	A	A	142460072	1	1	59	0	1	0	0	0	0	0	0	0	12720	493	17	3		3	PRSS1	7	142460072	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	145	142460072	16678591	607	66230											
CLCN1	1180	broad.mit.edu	37	chr7	143039110	143039110	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagattgctcacatcctGcccatgatggtggctgttat	11	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143039110	A	A	143039110	2	1	59	1	0	0	0	0	0	0	0	1	3493	1306	46	4		4	CLCN1	7	143039110	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	579038	143039110	16099553	608	66231											
EPHA1	2041	broad.mit.edu	37	chr7	143088839	143088839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatatgggatcccatctgagCcactcaggctgggcaggcga	14	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143088839	T	T	143088839	3	4	59	1	0	0	0	0	1	0	0	0	5207	739	26	4	212	4	EPHA1	7	143088839	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	49729	143088839	16049824	609	66232											
OR2A12	346525	broad.mit.edu	37	chr7	143793059	143793059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacccgatcctgaaccccCtcatctacagccttaggaat	5	16	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143793059	A	A	143793059	3	1	59	1	0	0	0	0	1	0	0	0	11069	681	24	2	861	2	OR2A12	7	143793059	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	704220	143793059	15345604	610	66233											
ARHGEF5	7984	broad.mit.edu	37	chr7	144068249	144068249	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcttcctcatctccaacctCctaggtcaaatttgagctga	5	13	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144068249	T	T	144068249	1	4	59	0	1	0	0	0	0	0	0	0	911	870	30	4		4	ARHGEF5	7	144068249	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	275190	144068249	15070414	611	66234											
CNTNAP2	26047	broad.mit.edu	37	chr7	146536953	146536953	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggatgctctacagcgacaCagggagaaactggaaaccct	11	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146536953	T	T	146536953	3	4	59	1	0	0	0	0	1	0	0	0	3679	478	17	4	369	4	CNTNAP2	7	146536953	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2468704	146536953	12601710	612	66235											
CNTNAP2	26047	broad.mit.edu	37	chr7	147014487	147014487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaattacaaggaccttgCatcgtatggttcctttctgt	8	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147014487	A	A	147014487	1	1	59	0	1	0	0	0	0	0	0	0	3679	725	25	3		3	CNTNAP2	7	147014487	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	477534	147014487	12124176	613	66236											
CNTNAP2	26047	broad.mit.edu	37	chr7	147097178	147097178	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttaagatgcctgactcaaCtcttattctcaatctttttc	3	11	5	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147097178	T	T	147097178	1	4	59	0	1	0	0	0	0	0	0	0	3679	580	20	4		4	CNTNAP2	7	147097178	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	82691	147097178	12041485	614	66237											
ZNF425	155054	broad.mit.edu	37	chr7	148802280	148802280	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctgagttcggacttccctCtggacgagtttttgtacttt	10	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148802280	A	A	148802280	3	1	59	1	0	0	0	0	1	0	0	0	18026	913	32	3	1579	3	ZNF425	7	148802280	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1705102	148802280	10336383	615	66238											
WDR60	55112	broad.mit.edu	37	chr7	158677276	158677276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgaacacagaaatcgaGgtgcaagctcaaaaagagat	11	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158677276	T	T	158677276	3	4	59	1	0	0	0	0	1	0	0	0	17438	1000	35	2	923	2	WDR60	7	158677276	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	9874996	158677276	461387	616	66239											
RP1L1	94137	broad.mit.edu	37	chr8	10466151	10466151	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcttggtcacctcctgcCgcagcttcaccctgcaagtt	9	15	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10466151	A	A	10466151	2	1	59	1	0	0	0	0	0	0	0	1	13644	639	23	1		1	RP1L1	8	10466151	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08		10466151	135897871	617	66240											
RP1L1	94137	broad.mit.edu	37	chr8	10466368	10466368	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgagtctctggctccccTcgccatcctcaccctcgtcc	7	19	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10466368	A	A	10466368	3	1	59	1	0	0	0	0	1	0	0	0	13644	1551	54	5	1966	5	RP1L1	8	10466368	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	217	10466368	135897654	618	66241											
RP1L1	94137	broad.mit.edu	37	chr8	10470657	10470657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacggacaggctgccgtcCtcattcatgcggaccttctt	9	15	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10470657	A	A	10470657	3	1	59	1	0	0	0	0	1	0	0	0	13644	680	24	2	6255	2	RP1L1	8	10470657	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4289	10470657	135893365	619	66242											
XKR6	286046	broad.mit.edu	37	chr8	10757077	10757077	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacttcctctctcacccactCtggtcttttcggcctctcca	5	18	5	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10757077	A	A	10757077	1	1	59	0	1	0	0	0	0	0	0	0	17562	928	32	3		3	XKR6	8	10757077	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	286420	10757077	135606945	620	66243											
BLK	640	broad.mit.edu	37	chr8	11413053	11413053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctgcgccgcatcctgaGtccaggttcagcattttcat	8	15	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11413053	T	T	11413053	1	4	59	0	1	0	0	0	0	0	0	0	1450	1044	36	3		3	BLK	8	11413053	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	655976	11413053	134950969	621	66244											
USP17L2	377630	broad.mit.edu	37	chr8	11995836	11995836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagccaatgcctgtgagGgctggatgacatgaccagga	14	10	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11995836	T	T	11995836	3	4	59	1	0	0	0	0	1	0	0	0	17174	1232	43	2	1162	2	USP17L2	8	11995836	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	582783	11995836	134368186	622	66245											
RHOBTB2	23221	broad.mit.edu	37	chr8	22873257	22873257	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaaggccatgtccccagGtgagcatcggggccagtcct	13	13	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22873257	T	T	22873257	5	4	59	1	0	0	0	0	0	0	1	0	13443	1275	44	3	2082	3	RHOBTB2	8	22873257	Splice_Site	SNP	G	TCGA-17-Z028-01A-01W-0746-08	10877421	22873257	123490765	623	66246											
TNFRSF10A	8797	broad.mit.edu	37	chr8	23058197	23058197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttccccagtgggctttgTacctgattctttgtggacac	11	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23058197	C	C	23058197	1	2	59	0	1	0	0	0	0	0	0	0	16403	1653	57	5		5	TNFRSF10A	8	23058197	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	184940	23058197	123305825	624	66247											
EXTL3	2137	broad.mit.edu	37	chr8	28573653	28573653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctgcgctggtccaaccGcatccgcctcacgtggctca	10	17	2	0	rs146905864		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28573653	T	T	28573653	3	4	59	1	0	0	0	0	1	0	0	0	5370	1087	38	3	79	3	EXTL3	8	28573653	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5515456	28573653	117790369	625	66248											
KCNU1	157855	broad.mit.edu	37	chr8	36671880	36671880	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggaccttcatcatgttcttCacactggggagtttggtgaa	11	9	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36671880	T	T	36671880	2	4	59	1	0	0	0	0	0	0	0	1	8163	825	29	4		4	KCNU1	8	36671880	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	8098227	36671880	109692142	626	66249											
KCNU1	157855	broad.mit.edu	37	chr8	36693916	36693917	+	Intron	DNP	CC	AA	AA													tctagcatattccatctcctCcttttatctatatagctaga							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36693917	AA	AA	36693916	1	1	59	0	1	0	0	0	0	0	0	0	8163	870	30	3		3	KCNU1	8	36693916	Intron	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	22036	36693916	109670106	627	66250											
KCNU1	157855	broad.mit.edu	37	chr8	36698135	36698135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcattcttcagacaacagCattctttcaacaacgttcac	3	14	6	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36698135	A	A	36698135	1	1	59	0	1	0	0	0	0	0	0	0	8163	725	25	3		3	KCNU1	8	36698135	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4219	36698135	109665887	628	66251											
KCNU1	157855	broad.mit.edu	37	chr8	36768278	36768278	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acactaaaatattaatgtttGataaggttaaatgtgtcaga	7	3	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36768278	T	T	36768278	1	4	59	0	1	0	0	0	0	0	0	0	8163	1305	45	3		3	KCNU1	8	36768278	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	70143	36768278	109595744	629	66252											
PLEKHA2	59339	broad.mit.edu	37	chr8	38803790	38803790	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtaaaagtgcctcttcccAggctatggccttgttggggt	12	9	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38803790	T	T	38803790	1	4	59	0	1	0	0	0	0	0	0	0	12151	203	7	5		5	PLEKHA2	8	38803790	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2035512	38803790	107560232	630	66253											
MYST3	7994	broad.mit.edu	37	chr8	41790452	41790452	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcatgagggtccataatGgtgttggtcagctgctgcag	15	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41790452	A	A	41790452	2	1	59	1	0	0	0	0	0	0	0	1	10198	1335	47	4		4	MYST3	8	41790452	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2986662	41790452	104573570	631	66254											
POLB	5423	broad.mit.edu	37	chr8	42210134	42210134	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagattaaatatggtcctgaAggaccattagtgctctaaca	8	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42210134	T	T	42210134	1	4	59	0	1	0	0	0	0	0	0	0	12284	87	3	5		5	POLB	8	42210134	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	419682	42210134	104153888	632	66255											
HOOK3	84376	broad.mit.edu	37	chr8	42829232	42829232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgaagctaaccctccatGtttttgtgtctctccagagg	9	11	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42829232	T	T	42829232	1	4	59	0	1	0	0	0	0	0	0	0	7351	1392	48	3		3	HOOK3	8	42829232	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	619098	42829232	103534790	633	66256											
PRKDC	5591	broad.mit.edu	37	chr8	48772321	48772321	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agacatataggaaggaccatCtgaaatataaaaaaggagaa	9	4	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48772321	T	T	48772321	5	4	59	1	0	0	0	0	0	0	1	0	12627	927	32	4	6492	4	PRKDC	8	48772321	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5943089	48772321	97591701	634	66257											
PRKDC	5591	broad.mit.edu	37	chr8	48805957	48805957	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatctgttgcctttaaaaaGaaacaaaattaaaatgcaca	6	6	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48805957	A	A	48805957	1	1	59	0	1	0	0	0	0	0	0	0	12627	957	33	4		4	PRKDC	8	48805957	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	33636	48805957	97558065	635	66258											
PXDNL	137902	broad.mit.edu	37	chr8	52320774	52320774	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgaatgatggtggcagccGaatccacggccgcagaataa	12	9	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52320774	T	T	52320774	4	4	59	1	0	0	0	0	0	1	0	0	12956	1059	37	3	1009	3	PXDNL	8	52320774	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3514817	52320774	94043248	636	66259											
XKR4	114786	broad.mit.edu	37	chr8	56015490	56015490	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgctggtggttcgggctcAcgctcttcttcgtggtgctc	14	12	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56015490	T	T	56015490	3	4	59	1	0	0	0	0	1	0	0	0	17560	159	6	5	444	5	XKR4	8	56015490	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3694716	56015490	90348532	637	66260											
PREX2	80243	broad.mit.edu	37	chr8	68950332	68950332	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccataattgtaagtcgaaaaAtaattatttacagaagtgtc	6	5	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68950332	G	G	68950332	1	3	59	0	1	0	0	0	0	0	0	0	12583	116	4	5		5	PREX2	8	68950332	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	12934842	68950332	77413690	638	66261											
NCOA2	10499	broad.mit.edu	37	chr8	71082319	71082319	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaaactacccagtcactctCctccccatctgatataatat	2	14	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71082319	A	A	71082319	1	1	59	0	1	0	0	0	0	0	0	0	10324	870	30	3		3	NCOA2	8	71082319	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2131987	71082319	75281703	639	66262											
TRPA1	8989	broad.mit.edu	37	chr8	72951990	72951990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaaatattctttacacaCaggatgattgagaagctcta	8	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72951990	A	A	72951990	3	1	59	1	0	0	0	0	1	0	0	0	16702	478	17	3	1295	3	TRPA1	8	72951990	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1869671	72951990	73412032	640	66263											
TRPA1	8989	broad.mit.edu	37	chr8	72962973	72962973	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattacaacaacatatgtcAagcataaacccgggaagaat	7	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72962973	C	C	72962973	1	2	59	0	1	0	0	0	0	0	0	0	16702	145	5	5		5	TRPA1	8	72962973	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	10983	72962973	73401049	641	66264											
ZFHX4	79776	broad.mit.edu	37	chr8	77764407	77764407	+	Frame_Shift_Del	DEL	G	-	-													cctgggacggagttcagcttGgggccagatttgggcttgcc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77764407	-	-	77764407	7	5	59	1	0	1	0	1	0	0	0	0	17761	1339	47	0	5284	0	ZFHX4	8	77764407	Frame_Shift_Del	DEL	G	TCGA-17-Z028-01A-01W-0746-08	4801434	77764407	68599615	642	66265											
ZFHX4	79776	broad.mit.edu	37	chr8	77765642	77765642	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaacagatccaggaaaTggcagagaaatctggcctct	11	8	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77765642	A	A	77765642	3	1	59	1	0	0	0	0	1	0	0	0	17761	1464	51	5	6519	5	ZFHX4	8	77765642	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1235	77765642	68598380	643	66266											
ZFHX4	79776	broad.mit.edu	37	chr8	77776276	77776276	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagagacagtgcttcgtgtCccagtcagcaaatatcagtg	10	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77776276	A	A	77776276	2	1	59	1	0	0	0	0	0	0	0	1	17761	842	30	3		3	ZFHX4	8	77776276	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	10634	77776276	68587746	644	66267											
STMN2	11075	broad.mit.edu	37	chr8	80553737	80553737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagaagaaagacctgtcCctggaggagatccagaagaa	11	9	0	6			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80553737	A	A	80553737	2	1	59	1	0	0	0	0	0	0	0	1	15427	610	22	2		2	STMN2	8	80553737	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2777461	80553737	65810285	645	66268											
TPD52	7163	broad.mit.edu	37	chr8	80992708	80992708	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagacaaacgcagaatgCatggctgtctaatcgcctga	9	11	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80992708	A	A	80992708	1	1	59	0	1	0	0	0	0	0	0	0	16521	725	25	3		3	TPD52	8	80992708	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	438971	80992708	65371314	646	66269											
CA1	759	broad.mit.edu	37	chr8	86250682	86250682	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctccattgttcaggacctaCcaggacaaacacgtgtaaaa	8	11	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86250682	G	G	86250682	1	3	59	0	1	0	0	0	0	0	0	0	2536	522	18	4		4	CA1	8	86250682	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5257974	86250682	60113340	647	66270											
PSKH2	85481	broad.mit.edu	37	chr8	87076703	87076703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaatgtaacgatggctaaCccgccgcaggacgctcagct	11	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87076703	A	A	87076703	3	1	59	1	0	0	0	0	1	0	0	0	12771	507	18	3	820	3	PSKH2	8	87076703	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	826021	87076703	59287319	648	66271											
WWP1	11059	broad.mit.edu	37	chr8	87410449	87410450	+	Intron	DNP	TG	AT	AT													ttaactagttgtcaaaggcaTgcaaagaattccttccaaat							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	87410450	AT	AT	87410449	1	1	59	0	1	0	0	0	0	0	0	0	17542	1479	51	5		5	WWP1	8	87410449	Intron	DNP	TG	TCGA-17-Z028-01A-01W-0746-08	333746	87410449	58953573	649	66272											
CNGB3	54714	broad.mit.edu	37	chr8	87669835	87669835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagatcaccctgtttgttGgcagccccgagctcctgtgg	11	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87669835	T	T	87669835	1	4	59	0	1	0	0	0	0	0	0	0	3633	1363	47	2		2	CNGB3	8	87669835	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	259386	87669835	58694187	650	66273											
CNGB3	54714	broad.mit.edu	37	chr8	87680164	87680164	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatatgaagtaaggaaaatAgaagctatctgtgactttga	10	3	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87680164	G	G	87680164	1	3	59	0	1	0	0	0	0	0	0	0	3633	435	15	5		5	CNGB3	8	87680164	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	10329	87680164	58683858	651	66274											
CNBD1	168975	broad.mit.edu	37	chr8	88365807	88365807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttctgataaaaacaataCtgattcattatatggaagca	6	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88365807	A	A	88365807	1	1	59	0	1	0	0	0	0	0	0	0	3623	580	20	3		3	CNBD1	8	88365807	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	685643	88365807	57998215	652	66275											
CNBD1	168975	broad.mit.edu	37	chr8	88365987	88365987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaaagaagttgagatgGcaatcattgaagataaggac	10	5	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88365987	T	T	88365987	3	4	59	1	0	0	0	0	1	0	0	0	3623	1203	42	3	1314	3	CNBD1	8	88365987	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	180	88365987	57998035	653	66276											
SLC26A7	115111	broad.mit.edu	37	chr8	92307883	92307883	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatccgactttgaaatgcaAaggatccacgttgctgcagc	9	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92307883	G	G	92307883	2	3	59	1	0	0	0	0	0	0	0	1	14636	11	1	5		5	SLC26A7	8	92307883	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3941896	92307883	54056139	654	66277											
GEM	2669	broad.mit.edu	37	chr8	95262489	95262489	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatagattattggtcccaaTggccttcaacaacggccatc	7	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95262489	A	A	95262489	1	1	59	0	1	0	0	0	0	0	0	0	6393	1479	51	5		5	GEM	8	95262489	3'UTR	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2954606	95262489	51101533	655	66278											
KIAA1429	25962	broad.mit.edu	37	chr8	95503860	95503860	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtggaaagcaccccgtcCtcctctattgcctgaaaacc	7	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95503860	A	A	95503860	4	1	59	1	0	0	0	0	0	1	0	0	8301	690	24	2	364	2	KIAA1429	8	95503860	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	241371	95503860	50860162	656	66279											
KIAA1429	25962	broad.mit.edu	37	chr8	95507083	95507083	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaatatttagtaataattTataccaaatccagatctgta	3	6	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95507083	G	G	95507083	1	3	59	0	1	0	0	0	0	0	0	0	8301	1769	61	5		5	KIAA1429	8	95507083	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3223	95507083	50856939	657	66280											
PGCP	10404	broad.mit.edu	37	chr8	97891898	97891898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagtaaatcaatacttcCcacatttcctgtttcccaga	4	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97891898	A	A	97891898	1	1	59	0	1	0	0	0	0	0	0	0	11881	638	22	2		2	PGCP	8	97891898	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2384815	97891898	48472124	658	66281											
RIMS2	9699	broad.mit.edu	37	chr8	104897987	104897987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggatttctatgctaaGgatggatcgaccatcaaggc	10	9	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104897987	T	T	104897987	3	4	59	1	0	0	0	0	1	0	0	0	13479	1000	35	2	1300	2	RIMS2	8	104897987	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7006089	104897987	41466035	659	66282											
ZFPM2	23414	broad.mit.edu	37	chr8	106767145	106767145	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaatgtgtctgctttcccaCattttgtgacggtctggaga	10	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106767145	G	G	106767145	1	3	59	0	1	0	0	0	0	0	0	0	17784	493	17	4		4	ZFPM2	8	106767145	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1869158	106767145	39596877	660	66283											
ZFPM2	23414	broad.mit.edu	37	chr8	106813563	106813563	+	Missense_Mutation	SNP	G	T	T													cacagacttattgaccagaaGcgaacttccccagagccaaa							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106813563	T	T	106813563	3	4	59	1	0	0	0	0	1	0	0	0	17784	971	34	3	1283	3	ZFPM2	8	106813563	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	46418	106813563	39550459	661	66284	306	2									
ZFPM2	23414	broad.mit.edu	37	chr8	106813565	106813565	+	Nonsense_Mutation	SNP	G	T	T													cagacttattgaccagaagcGaacttccccagagccaaaag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106813565	T	T	106813565	4	4	59	1	0	0	0	0	0	1	0	0	17784	1059	37	3	1285	3	ZFPM2	8	106813565	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2	106813565	39550457	662	66285	306	2									
ABRA	137735	broad.mit.edu	37	chr8	107781677	107781677	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggcaggacttcatctgcTgcctggattcccagacttgg	11	13	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107781677	G	G	107781677	1	3	59	0	1	0	0	0	0	0	0	0	100	1595	55	5		5	ABRA	8	107781677	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	968112	107781677	38582345	663	66286											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477130	110477130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagactaagaggatcctggCtccttatgttggagggtggg	16	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110477130	A	A	110477130	3	1	59	1	0	0	0	0	1	0	0	0	12067	797	28	3	8263	3	PKHD1L1	8	110477130	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2695453	110477130	35886892	664	66287											
CSMD3	114788	broad.mit.edu	37	chr8	113266537	113266537	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggcacacctgggttttcaCaagaggtttgggtaggctct	14	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113266537	G	G	113266537	3	3	59	1	0	0	0	0	1	0	0	0	3980	478	17	4	1104	4	CSMD3	8	113266537	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2789407	113266537	33097485	665	66288											
CSMD3	114788	broad.mit.edu	37	chr8	113392686	113392686	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggggtattgttgttcCtgaaatgatatatgagaagg	13	2	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113392686	A	A	113392686	5	1	59	1	0	0	0	0	0	0	1	0	3980	695	24	2	5228	2	CSMD3	8	113392686	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	126149	113392686	32971336	666	66289											
CSMD3	114788	broad.mit.edu	37	chr8	113563015	113563015	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataagagatccactaatttcCtttaaaagcatatcattttc	3	8	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113563015	G	G	113563015	3	3	59	1	0	0	0	0	1	0	0	0	3980	680	24	4	6854	4	CSMD3	8	113563015	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	170329	113563015	32801007	667	66290											
CSMD3	114788	broad.mit.edu	37	chr8	114111193	114111193	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctccacaagcatcttcagCtgttaaaaatgacaaaatat	4	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114111193	G	G	114111193	5	3	59	1	0	0	0	0	0	0	1	0	3980	811	28	4	10682	4	CSMD3	8	114111193	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	548178	114111193	32252829	668	66291											
CSMD3	114788	broad.mit.edu	37	chr8	114290947	114290947	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttaacctaaaacaaaatgGaattaattgttagagacata	6	4	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114290947	C	C	114290947	1	2	59	0	1	0	0	0	0	0	0	0	3980	1189	41	4		4	CSMD3	8	114290947	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	179754	114290947	32073075	669	66292											
CSMD3	114788	broad.mit.edu	37	chr8	114389119	114389119	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaagatgaagcttcctggCcgggaaaacaaaacagccgt	12	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114389119	G	G	114389119	1	3	59	0	1	0	0	0	0	0	0	0	3980	754	26	4		4	CSMD3	8	114389119	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	98172	114389119	31974903	670	66293											
NOV	4856	broad.mit.edu	37	chr8	120435364	120435364	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgaagactaccagagggAaaatgtaacctgtcactcaa	9	9	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120435364	G	G	120435364	3	3	59	1	0	0	0	0	1	0	0	0	10648	247	9	5	1084	5	NOV	8	120435364	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	6046245	120435364	25928658	671	66294											
ZHX2	22882	broad.mit.edu	37	chr8	123966331	123966331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttcttttcgttgccaGggttaatatagattgtaggg	11	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123966331	T	T	123966331	1	4	59	0	1	0	0	0	0	0	0	0	17802	1015	35	2		2	ZHX2	8	123966331	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3530967	123966331	22397691	672	66295											
ATAD2	29028	broad.mit.edu	37	chr8	124371495	124371495	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaatttttcaaagacttCtggataaagtaatggaaaca	6	4	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124371495	T	T	124371495	3	4	59	1	0	0	0	0	1	0	0	0	1075	922	32	4	2896	4	ATAD2	8	124371495	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	405164	124371495	21992527	673	66296											
KLHL38	340359	broad.mit.edu	37	chr8	124663935	124663935	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgctggccatactctccCagacattgcagatgctgtca	9	13	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124663935	T	T	124663935	4	4	59	1	0	0	0	0	0	1	0	0	8461	595	21	4	525	4	KLHL38	8	124663935	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	292440	124663935	21700087	674	66297											
ANXA13	312	broad.mit.edu	37	chr8	124714864	124714864	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggctgggtgcaagcttgctGaccacccctggaatcacctt	11	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124714864	T	T	124714864	1	4	59	0	1	0	0	0	0	0	0	0	717	1305	45	3		3	ANXA13	8	124714864	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	50929	124714864	21649158	675	66298											
ZNF572	137209	broad.mit.edu	37	chr8	125987818	125987818	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaataagctttaacaaataCctccaaacataatttatttc	2	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125987818	G	G	125987818	1	3	59	0	1	0	0	0	0	0	0	0	18131	522	18	4		4	ZNF572	8	125987818	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1272954	125987818	20376204	676	66299											
TG	7038	broad.mit.edu	37	chr8	133895170	133895170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcagtgccagacggaagGgccctgctggtgtgtggacg	19	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133895170	T	T	133895170	3	4	59	1	0	0	0	0	1	0	0	0	15936	1232	43	2	1031	2	TG	8	133895170	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7907352	133895170	12468852	677	66300											
TG	7038	broad.mit.edu	37	chr8	134144116	134144116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttctacccagcctacgaGgggcagttttctctggagga	11	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134144116	T	T	134144116	3	4	59	1	0	0	0	0	1	0	0	0	15936	991	35	2	8105	2	TG	8	134144116	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	248946	134144116	12219906	678	66301											
ST3GAL1	6482	broad.mit.edu	37	chr8	134488142	134488142	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcggagagctccaggacCatctgcttggggaaccaggt	13	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134488142	T	T	134488142	3	4	59	1	0	0	0	0	1	0	0	0	15332	594	21	4	920	4	ST3GAL1	8	134488142	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	344026	134488142	11875880	679	66302											
COL22A1	169044	broad.mit.edu	37	chr8	139636013	139636013	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggctttccatctctgccctCtttgccttcttctccctgca	5	18	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139636013	G	G	139636013	3	3	59	1	0	0	0	0	1	0	0	0	3713	922	32	4	1203	4	COL22A1	8	139636013	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5147871	139636013	6728009	680	66303											
COL22A1	169044	broad.mit.edu	37	chr8	139889971	139889971	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcactcttgggaggggccgCatggggcccgggcgcactca	17	13	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139889971	T	T	139889971	1	4	59	0	1	0	0	0	0	0	0	0	3713	725	25	4		4	COL22A1	8	139889971	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	253958	139889971	6474051	681	66304											
FLJ43860	389690	broad.mit.edu	37	chr8	142481002	142481002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgggatcagagtggtgGgggtcagggtgaggccatta	20	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142481002	T	T	142481002	1	4	59	0	1	0	0	0	0	0	0	0	5987	1247	43	2		2	FLJ43860	8	142481002	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2591031	142481002	3883020	682	66305											
CYP11B2	1585	broad.mit.edu	37	chr8	143999131	143999131	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgttgcctggatgctgGggcatggcttcaaacggcag	14	11	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143999131	T	T	143999131	2	4	59	1	0	0	0	0	0	0	0	1	4179	1219	43	2		2	CYP11B2	8	143999131	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1518129	143999131	2364891	683	66306											
ZNF623	9831	broad.mit.edu	37	chr8	144733541	144733541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagattttaactcaactaCaaacgttaaaaataatcaaa	4	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144733541	A	A	144733541	3	1	59	1	0	0	0	0	1	0	0	0	18174	478	17	3	1501	3	ZNF623	8	144733541	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	734410	144733541	1630481	684	66307											
KIAA1432	57589	broad.mit.edu	37	chr9	5763883	5763883	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacaggtaacaattctcttCttataaaggggcaagaatta	7	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5763883	T	T	5763883	1	4	59	0	1	0	0	0	0	0	0	0	8303	928	32	4		4	KIAA1432	9	5763883	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08		5763883	135449548	685	66308											
TTC39B	158219	broad.mit.edu	37	chr9	15175154	15175154	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaagagcagaggaaaatCaagtaaatcttaacagaaca	8	6	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15175154	A	A	15175154	1	1	59	0	1	0	0	0	0	0	0	0	16834	841	29	3		3	TTC39B	9	15175154	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9411271	15175154	126038277	686	66309											
BNC2	54796	broad.mit.edu	37	chr9	16436469	16436469	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctggagtgagtaaacTtctataaaatggaggaactg	10	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16436469	G	G	16436469	3	3	59	1	0	0	0	0	1	0	0	0	1481	1609	56	5	1584	5	BNC2	9	16436469	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1261315	16436469	124776962	687	66310											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18662046	18662046	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaacccaagcttcaggagTgcaacttggatccttgtcca	8	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18662046	A	A	18662046	3	1	59	1	0	0	0	0	1	0	0	0	274	1696	59	5	1094	5	ADAMTSL1	9	18662046	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2225577	18662046	122551385	688	66311											
DENND4C	55667	broad.mit.edu	37	chr9	19370007	19370007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taataatccagtattttttgCttgccaccactcagtcattt	4	10	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19370007	T	T	19370007	1	4	59	0	1	0	0	0	0	0	0	0	4475	812	28	4		4	DENND4C	9	19370007	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	707961	19370007	121843424	689	66312											
KIAA1797	54914	broad.mit.edu	37	chr9	20946565	20946565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttaggcagaaaaacagtGcccaatccatggtaaatgta	9	7	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20946565	T	T	20946565	1	4	59	0	1	0	0	0	0	0	0	0	8328	1334	46	3		3	KIAA1797	9	20946565	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1576558	20946565	120266866	690	66313											
LINGO2	158038	broad.mit.edu	37	chr9	28635257	28635257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtaattaatggcaaaatGcagtgagtaacattagaaag	10	4	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28635257	T	T	28635257	1	4	59	0	1	0	0	0	0	0	0	0	8888	1334	46	3		3	LINGO2	9	28635257	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7688692	28635257	112578174	691	66314											
DDX58	23586	broad.mit.edu	37	chr9	32488878	32488878	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgaaacaaaggttttTccacaaccttttaacatgta	6	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32488878	A	A	32488878	2	1	59	1	0	0	0	0	0	0	0	1	4408	1770	62	5		5	DDX58	9	32488878	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3853621	32488878	108724553	692	66315											
ARID3C	138715	broad.mit.edu	37	chr9	34627566	34627566	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctttctataggtctccGtgtctctgtgtctcttttca	7	11	6	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34627566	A	A	34627566	1	1	59	0	1	0	0	0	0	0	0	0	920	1160	40	4		4	ARID3C	9	34627566	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2138688	34627566	106585865	693	66316											
CNTNAP3	79937	broad.mit.edu	37	chr9	39178266	39178266	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctgcatggctttaaatttCaaagaaataacgtctcttat	5	8	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39178266	A	A	39178266	3	1	59	1	0	0	0	0	1	0	0	0	3680	825	29	3	3316	3	CNTNAP3	9	39178266	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4550700	39178266	102035165	694	66317											
FAM75A6	389730	broad.mit.edu	37	chr9	43626666	43626666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggatagattttgtgggGtctcacccagaatttgcccc	10	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43626666	T	T	43626666	3	4	59	1	0	0	0	0	1	0	0	0	5674	1261	44	3	2014	3	FAM75A6	9	43626666	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4448400	43626666	97586765	695	66318											
PSAT1	29968	broad.mit.edu	37	chr9	80919661	80919661	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctgcccagagctgttccaGacaactataaggtgattttt	8	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80919661	T	T	80919661	3	4	59	1	0	0	0	0	1	0	0	0	12750	942	33	3	216	3	PSAT1	9	80919661	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	37292995	80919661	60293770	696	66319											
SHC3	53358	broad.mit.edu	37	chr9	91689956	91689956	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctcagtaaagctgcaaggAagaagcctgcgaaacactca	10	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91689956	G	G	91689956	1	3	59	0	1	0	0	0	0	0	0	0	14385	261	9	5		5	SHC3	9	91689956	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	10770295	91689956	49523475	697	66320											
ROR2	4920	broad.mit.edu	37	chr9	94487276	94487276	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgatggccacagcctgggtCtgctcccccggggcagggcc	15	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94487276	A	A	94487276	3	1	59	1	0	0	0	0	1	0	0	0	13638	912	32	3	1335	3	ROR2	9	94487276	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2797320	94487276	46726155	698	66321											
OGN	4969	broad.mit.edu	37	chr9	95147854	95147854	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttactcattgttgagacaGactattagtgtaggtgtact	9	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95147854	C	C	95147854	1	2	59	0	1	0	0	0	0	0	0	0	10941	957	33	4		4	OGN	9	95147854	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	660578	95147854	46065577	699	66322											
KIAA1529	57653	broad.mit.edu	37	chr9	100077004	100077004	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctggagttctcccgaacCgataaagtaagtcggctgca	11	11	1	0	rs140321791		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100077004	A	A	100077004	2	1	59	1	0	0	0	0	0	0	0	1	8310	639	23	1		1	KIAA1529	9	100077004	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4929150	100077004	41136427	700	66323											
GABBR2	9568	broad.mit.edu	37	chr9	101216263	101216263	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagaggcatgggactgacCgtgaccccgaagaagttggt	14	11	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101216263	T	T	101216263	2	4	59	1	0	0	0	0	0	0	0	1	6216	666	23	4		4	GABBR2	9	101216263	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1139259	101216263	39997168	701	66324											
GABBR2	9568	broad.mit.edu	37	chr9	101370111	101370111	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgaccaagagccctcCggcacaaatggaagaagaaa	11	11	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101370111	T	T	101370111	1	4	59	0	1	0	0	0	0	0	0	0	6216	667	23	4		4	GABBR2	9	101370111	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	153848	101370111	39843320	702	66325											
RNF20	56254	broad.mit.edu	37	chr9	104323711	104323711	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccttgcacctagtaggcAcaaaataaatatttgttaaa	7	7	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104323711	T	T	104323711	1	4	59	0	1	0	0	0	0	0	0	0	13584	174	6	5		5	RNF20	9	104323711	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2953600	104323711	36889720	703	66326											
TMEM38B	55151	broad.mit.edu	37	chr9	108522027	108522027	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaggaaaatattcaaaAgccattccgtgctggtttta	8	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108522027	G	G	108522027	1	3	59	0	1	0	0	0	0	0	0	0	16283	87	3	5		5	TMEM38B	9	108522027	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	4198316	108522027	32691404	704	66327											
TMEM38B	55151	broad.mit.edu	37	chr9	108536317	108536317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaagccggtagatgttGcctcagataatgttaaaaag	9	8	2	2	rs146683657		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108536317	T	T	108536317	3	4	59	1	0	0	0	0	1	0	0	0	16283	1319	46	3	854	3	TMEM38B	9	108536317	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	14290	108536317	32677114	705	66328											
ACTL7B	10880	broad.mit.edu	37	chr9	111617731	111617731	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagctccgcgtacttctcCcggttgctgctggggctgag	14	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111617731	T	T	111617731	2	4	59	1	0	0	0	0	0	0	0	1	201	610	22	4		4	ACTL7B	9	111617731	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3081414	111617731	29595700	706	66329											
SVEP1	79987	broad.mit.edu	37	chr9	113208110	113208110	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catagccttcccgacacttcTgcttacccgttataatcagt	5	14	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113208110	A	A	113208110	1	1	59	0	1	0	0	0	0	0	0	0	15538	1595	55	5		5	SVEP1	9	113208110	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1590379	113208110	28005321	707	66330											
TNC	3371	broad.mit.edu	37	chr9	117840453	117840453	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcaaggcagtggtgtctgTgacatctttcacctcgatct	10	10	5	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117840453	C	C	117840453	3	2	59	1	0	0	0	0	1	0	0	0	16393	1696	59	5	4250	5	TNC	9	117840453	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	4632343	117840453	23372978	708	66331											
PAPPA	5069	broad.mit.edu	37	chr9	118982343	118982343	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctcgccccccaagttctGggccacacaacggactctgt	9	18	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118982343	T	T	118982343	2	4	59	1	0	0	0	0	0	0	0	1	11526	1335	47	2		2	PAPPA	9	118982343	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1141890	118982343	22231088	709	66332											
ASTN2	23245	broad.mit.edu	37	chr9	120169142	120169142	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcattgtcccctaacacacAcacacacacacacacacaca	2	18	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120169142	C	C	120169142	1	2	59	0	1	0	0	0	0	0	0	0	1069	174	6	5		5	ASTN2	9	120169142	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1186799	120169142	21044289	710	66333											
DBC1	1620	broad.mit.edu	37	chr9	122012347	122012347	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agagggagggagggaagaagGaaggaaggaagaaaggaagg	22	0	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122012347	C	C	122012347	1	2	59	0	1	0	0	0	0	0	0	0	4280	1189	41	4		4	DBC1	9	122012347	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1843205	122012347	19201084	711	66334											
OR1J2	26740	broad.mit.edu	37	chr9	125274125	125274125	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttatgtcctgaagccctaaGacaaatgttaacatgttgaa	8	7	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125274125	T	T	125274125	1	4	59	0	1	0	0	0	0	0	0	0	11054	957	33	3		3	OR1J2	9	125274125	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3261778	125274125	15939306	712	66335											
PSMB7	5695	broad.mit.edu	37	chr9	127174492	127174492	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccatttaaaatggctcTttaatataacaactgatttc	3	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127174492	A	A	127174492	1	1	59	0	1	0	0	0	0	0	0	0	12788	1624	56	5		5	PSMB7	9	127174492	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1900367	127174492	14038939	713	66336											
NCS1	23413	broad.mit.edu	37	chr9	132980043	132980043	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcctgggccccgggcaggcGatgttggtggtgggtgggtg	21	8	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132980043	A	A	132980043	1	1	59	0	1	0	0	0	0	0	0	0	10335	1073	37	4		4	NCS1	9	132980043	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5805551	132980043	8233388	714	66337											
NUP214	8021	broad.mit.edu	37	chr9	134026140	134026140	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctttcttttggagattaaAgagaccacagaggtttgtgt	10	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134026140	C	C	134026140	3	2	59	1	0	0	0	0	1	0	0	0	10857	69	3	5	2327	5	NUP214	9	134026140	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1046097	134026140	7187291	715	66338											
TTF1	7270	broad.mit.edu	37	chr9	135277845	135277845	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacacaaacaacatcaacatCctttctaaaatgctttggtg	4	10	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135277845	G	G	135277845	3	3	59	1	0	0	0	0	1	0	0	0	16844	855	30	4	2393	4	TTF1	9	135277845	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1251705	135277845	5935586	716	66339											
DIP2C	22982	broad.mit.edu	37	chr10	327243	327243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtccagtgcccctaccaCgtagagggcatcatggcgct	11	14	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	327243	A	A	327243	3	1	59	1	0	0	0	0	1	0	0	0	4569	536	19	3	363	3	DIP2C	10	327243	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08		327243	135207504	717	66340											
ITIH2	3698	broad.mit.edu	37	chr10	7774362	7774362	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgacttgcaggattttctatCgaaagacaagcatgcagatc	9	9	1	2	rs150529114		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7774362	A	A	7774362	4	1	59	1	0	0	0	0	0	1	0	0	7974	893	31	3	1763	3	ITIH2	10	7774362	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7447119	7774362	127760385	718	66341											
KIN	22944	broad.mit.edu	37	chr10	7829761	7829761	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccctcctgggaagacgGggccactccgggcccactca	15	16	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7829761	A	A	7829761	1	1	59	0	1	0	0	0	0	0	0	0	8386	1247	43	4		4	KIN	10	7829761	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	55399	7829761	127704986	719	66342											
SEPHS1	22929	broad.mit.edu	37	chr10	13378430	13378430	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgagccatggagtggactCcacagagaacgtggagactt	14	8	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13378430	A	A	13378430	1	1	59	0	1	0	0	0	0	0	0	0	14167	870	30	3		3	SEPHS1	10	13378430	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5548669	13378430	122156317	720	66343											
OLAH	55301	broad.mit.edu	37	chr10	15115235	15115235	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatccaatttttagatatttTccctttcacttttaaaataa	1	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15115235	A	A	15115235	1	1	59	0	1	0	0	0	0	0	0	0	10946	1798	62	5		5	OLAH	10	15115235	3'UTR	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1736805	15115235	120419512	721	66344											
CUBN	8029	broad.mit.edu	37	chr10	16957945	16957945	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggagatgccactcacagAataagttgtctctgtatgga	10	9	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16957945	G	G	16957945	3	3	59	1	0	0	0	0	1	0	0	0	4084	246	9	5	3874	5	CUBN	10	16957945	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1842710	16957945	118576802	722	66345											
CUBN	8029	broad.mit.edu	37	chr10	17169794	17169794	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatagaactagggagaacTcatcggttcttatgacgtag	10	7	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17169794	G	G	17169794	1	3	59	0	1	0	0	0	0	0	0	0	4084	1566	54	5		5	CUBN	10	17169794	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	211849	17169794	118364953	723	66346											
SLC39A12	221074	broad.mit.edu	37	chr10	18331729	18331729	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttggctttctctcctgctCttggctatatatgagcaaaa	9	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18331729	G	G	18331729	2	3	59	1	0	0	0	0	0	0	0	1	14729	900	32	4		4	SLC39A12	10	18331729	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1161935	18331729	117203018	724	66347											
GPR158	57512	broad.mit.edu	37	chr10	25755589	25755589	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttttttcagagcatccggGcatcgggccttatcctgttg	11	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25755589	A	A	25755589	3	1	59	1	0	0	0	0	1	0	0	0	6728	1203	42	4	1363	4	GPR158	10	25755589	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7423860	25755589	109779158	725	66348											
GPR158	57512	broad.mit.edu	37	chr10	25887482	25887482	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcagaaatctgggattaTgaaacaacaaagggtcaacc	9	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887482	A	A	25887482	3	1	59	1	0	0	0	0	1	0	0	0	6728	1464	51	5	2969	5	GPR158	10	25887482	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	131893	25887482	109647265	726	66349											
ZEB1	6935	broad.mit.edu	37	chr10	31816208	31816208	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctaatcgtttttctagaagGaaaataaattctaattgata	5	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31816208	A	A	31816208	1	1	59	0	1	0	0	0	0	0	0	0	17749	1189	41	4		4	ZEB1	10	31816208	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5928726	31816208	103718539	727	66350											
GJD4	219770	broad.mit.edu	37	chr10	35896733	35896733	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagcgtctatgtcctgCaccgaggagccacgctcgcc	10	16	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35896733	T	T	35896733	3	4	59	1	0	0	0	0	1	0	0	0	6483	710	25	4	298	4	GJD4	10	35896733	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4080525	35896733	99638014	728	66351											
ANKRD30A	91074	broad.mit.edu	37	chr10	37481880	37481881	+	Intron	DNP	CC	AA	AA													accccaaaagctagtgtaatCccttttgcaatccaagcatg							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	37481881	AA	AA	37481880	1	1	59	0	1	0	0	0	0	0	0	0	658	870	30	3		3	ANKRD30A	10	37481880	Intron	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	1585147	37481880	98052867	729	66352											
ZNF485	220992	broad.mit.edu	37	chr10	44101199	44101199	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttgtactctttaaggaCtcagtttgtataaaacacag	6	7	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44101199	A	A	44101199	1	1	59	0	1	0	0	0	0	0	0	0	18065	580	20	3		3	ZNF485	10	44101199	5'Flank	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6619319	44101199	91433548	730	66353											
PCDH15	65217	broad.mit.edu	37	chr10	55780237	55780237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaataaagaaatgcaggaaGgatggaagtcatgcgttagt	12	3	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55780237	T	T	55780237	1	4	59	0	1	0	0	0	0	0	0	0	11605	1015	35	2		2	PCDH15	10	55780237	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	11679038	55780237	79754510	731	66354											
PCDH15	65217	broad.mit.edu	37	chr10	57024858	57024858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccactttcagcttctcaCttgccccctcctagaaatcc	3	17	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57024858	A	A	57024858	1	1	59	0	1	0	0	0	0	0	0	0	11605	580	20	3		3	PCDH15	10	57024858	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1244621	57024858	78509889	732	66355											
FAM13C	220965	broad.mit.edu	37	chr10	61065719	61065719	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacaggcaaaagcagtcttgGagacaggggttaatccaccc	11	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61065719	A	A	61065719	1	1	59	0	1	0	0	0	0	0	0	0	5500	1189	41	4		4	FAM13C	10	61065719	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4040861	61065719	74469028	733	66356											
JMJD1C	221037	broad.mit.edu	37	chr10	64974357	64974357	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaaaggtacttgagttttCctgagccaccttttctaaat	7	10	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64974357	T	T	64974357	3	4	59	1	0	0	0	0	1	0	0	0	8020	864	30	4	6128	4	JMJD1C	10	64974357	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3908638	64974357	70560390	734	66357											
HNRNPH3	3189	broad.mit.edu	37	chr10	70098868	70098868	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttatctctggaaagtgtgtAgtcatgtgtttctccttaaa	8	6	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70098868	T	T	70098868	1	4	59	0	1	0	0	0	0	0	0	0	7335	435	15	5		5	HNRNPH3	10	70098868	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5124511	70098868	65435879	735	66358											
HKDC1	80201	broad.mit.edu	37	chr10	70998835	70998835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacaaaaaagtttaaggcacGaggagttcaggacacggatg	13	6	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70998835	T	T	70998835	3	4	59	1	0	0	0	0	1	0	0	0	7260	1058	37	3	551	3	HKDC1	10	70998835	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	899967	70998835	64535912	736	66359											
HK1	3098	broad.mit.edu	37	chr10	71128269	71128269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcccagccctcatccaGccccatccattcttctttgc	5	20	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71128269	T	T	71128269	1	4	59	0	1	0	0	0	0	0	0	0	7257	986	34	3		3	HK1	10	71128269	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	129434	71128269	64406478	737	66360											
ANXA7	310	broad.mit.edu	37	chr10	75139842	75139842	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaagcttcttgtggcaaGgatcatgttaaagcaagatt	11	5	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75139842	A	A	75139842	3	1	59	1	0	0	0	0	1	0	0	0	723	1000	35	4	380	4	ANXA7	10	75139842	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4011573	75139842	60394905	738	66361											
ZMIZ1	57178	broad.mit.edu	37	chr10	81065350	81065350	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggggaatcctgaatgcCatccaacagtaagtggggcc	13	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81065350	T	T	81065350	2	4	59	1	0	0	0	0	0	0	0	1	17822	581	21	4		4	ZMIZ1	10	81065350	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5925508	81065350	54469397	739	66362											
OPN4	94233	broad.mit.edu	37	chr10	88420997	88420997	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaagagaaggtgtgtcagGagggccagctagcttgggga	18	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88420997	T	T	88420997	1	4	59	0	1	0	0	0	0	0	0	0	10976	1189	41	3		3	OPN4	10	88420997	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7355647	88420997	47113750	740	66363											
PPP1R3C	5507	broad.mit.edu	37	chr10	93389661	93389661	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggggaatatgacaagtcaaGaccagttacattgttgctta	11	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93389661	A	A	93389661	1	1	59	0	1	0	0	0	0	0	0	0	12474	957	33	4		4	PPP1R3C	10	93389661	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4968664	93389661	42145086	741	66364											
CEP55	55165	broad.mit.edu	37	chr10	95286265	95286265	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgtaaactagttcaaccAttgtggaagtcagtgtggca	11	7	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95286265	C	C	95286265	1	2	59	0	1	0	0	0	0	0	0	0	3285	232	8	5		5	CEP55	10	95286265	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1896604	95286265	40248482	742	66365											
CYP2C8	1558	broad.mit.edu	37	chr10	96802752	96802752	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctcgtgcactacagcatcAgtgtaaggcatgtggctcct	10	11	2	0	rs145569162	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96802752	T	T	96802752	2	4	59	1	0	0	0	0	0	0	0	1	4200	175	7	5		5	CYP2C8	10	96802752	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1516487	96802752	38731995	743	66366											
TLL2	7093	broad.mit.edu	37	chr10	98170137	98170137	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttcccctggggtgaccgaGatcctccagacgcagtggga	13	12	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98170137	T	T	98170137	2	4	59	1	0	0	0	0	0	0	0	1	16069	932	33	3		3	TLL2	10	98170137	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1367385	98170137	37364610	744	66367											
HPSE2	60495	broad.mit.edu	37	chr10	100249961	100249961	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagccagtagtcctgaggaGaatagagagggagagggtca	17	5	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100249961	T	T	100249961	1	4	59	0	1	0	0	0	0	0	0	0	7412	957	33	3		3	HPSE2	10	100249961	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2079824	100249961	35284786	745	66368											
DNMBP	23268	broad.mit.edu	37	chr10	101654700	101654700	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actacagtgatgttgatgctCacccggatgtgctggaggta	13	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101654700	A	A	101654700	1	1	59	0	1	0	0	0	0	0	0	0	4714	841	29	3		3	DNMBP	10	101654700	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1404739	101654700	33880047	746	66369											
PAX2	5076	broad.mit.edu	37	chr10	102522683	102522683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggactctgggattgatccAtcagttcctccttgcaggga	11	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102522683	G	G	102522683	1	3	59	0	1	0	0	0	0	0	0	0	11573	232	8	5		5	PAX2	10	102522683	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	867983	102522683	33012064	747	66370											
TDRD1	56165	broad.mit.edu	37	chr10	115973205	115973205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaagtggtggacaagttGgaaaacagttccctggtgga	15	5	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115973205	T	T	115973205	3	4	59	1	0	0	0	0	1	0	0	0	15852	1339	47	2	1986	2	TDRD1	10	115973205	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	13450522	115973205	19561542	748	66371											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118386478	118386478	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacattcgggttgttggggCggagacagctttcttaatac	12	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118386478	T	T	118386478	3	4	59	1	0	0	0	0	1	0	0	0	12246	768	27	4	454	4	PNLIPRP2	10	118386478	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2413273	118386478	17148269	749	66372											
SFXN4	119559	broad.mit.edu	37	chr10	120914478	120914478	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagacgggtaaagaaagGttgaaggcagacatgaattt	14	3	0	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120914478	A	A	120914478	1	1	59	0	1	0	0	0	0	0	0	0	14310	1276	44	4		4	SFXN4	10	120914478	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2528000	120914478	14620269	750	66373											
SCGB1C1	147199	broad.mit.edu	37	chr11	190158	190158	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggacactgcagggccctcTtgctcacagtgtagtcgtcg	13	12	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190158	C	C	190158	1	2	59	0	1	0	0	0	0	0	0	0	14007	1624	56	5		5	SCGB1C1	11	190158	5'Flank	SNP	T	TCGA-17-Z028-01A-01W-0746-08		190158	134816358	751	66374											
ZNF195	7748	broad.mit.edu	37	chr11	3381315	3381315	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggactgagcaagttttaatgAcgttgttacattcttgacac	9	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3381315	T	T	3381315	3	4	59	1	0	0	0	0	1	0	0	0	17884	275	10	5	970	5	ZNF195	11	3381315	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3191157	3381315	131625201	752	66375											
C11orf40	143501	broad.mit.edu	37	chr11	4594490	4594490	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtacttccttactcccaggGcactgctgcattccttgaag	8	13	0	1	rs78122004	byFrequency;by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4594490	C	C	4594490	1	2	59	0	1	0	0	0	0	0	0	0	1651	1218	42	4		4	C11orf40	11	4594490	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1213175	4594490	130412026	753	66376											
OR51F1	256892	broad.mit.edu	37	chr11	4790884	4790885	+	Missense_Mutation	DNP	CC	AA	AA													ctgatttcacgtgcctcaaaCcagaggatacctaatgttgt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	4790885	AA	AA	4790884	3	1	59	1	0	0	0	0	1	0	0	0	11190	508	18	3	677	3	OR51F1	11	4790884	Missense_Mutation	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	196394	4790884	130215632	754	66377											
OR51A7	119687	broad.mit.edu	37	chr11	4929496	4929496	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaagactcgacaaatctgGgagaagatcttggggaagtt	13	5	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4929496	A	A	4929496	4	1	59	1	0	0	0	0	0	1	0	0	11182	1241	43	4	899	4	OR51A7	11	4929496	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	138612	4929496	130077020	755	66378											
OR51V1	283111	broad.mit.edu	37	chr11	5221342	5221342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcggatgtctgaacaggCtaagcggagaagatcctggt	14	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5221342	A	A	5221342	3	1	59	1	0	0	0	0	1	0	0	0	11201	797	28	3	379	3	OR51V1	11	5221342	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	291846	5221342	129785174	756	66379											
OR56B4	196335	broad.mit.edu	37	chr11	6129676	6129676	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatggctctggtattttcttCctatgctgtaatccttcact	6	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6129676	T	T	6129676	3	4	59	1	0	0	0	0	1	0	0	0	11232	855	30	4	670	4	OR56B4	11	6129676	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	908334	6129676	128876840	757	66380											
HPX	3263	broad.mit.edu	37	chr11	6458394	6458394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcccatggccagtcccattCctgtgtccatggcctggaga	10	14	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6458394	A	A	6458394	3	1	59	1	0	0	0	0	1	0	0	0	7413	854	30	3	687	3	HPX	11	6458394	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	328718	6458394	128548122	758	66381											
OR6A2	8590	broad.mit.edu	37	chr11	6816690	6816690	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttggatccaacaaagccagCaagcatcttgggaatagtga	10	8	1	1	rs111641381		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6816690	G	G	6816690	3	3	59	1	0	0	0	0	1	0	0	0	11280	710	25	4	737	4	OR6A2	11	6816690	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	358296	6816690	128189826	759	66382											
SYT9	143425	broad.mit.edu	37	chr11	7384966	7384966	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctaacatcatggaatccagGagtaatgagtgttttcacaa	8	7	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7384966	T	T	7384966	1	4	59	0	1	0	0	0	0	0	0	0	15600	1189	41	3		3	SYT9	11	7384966	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	568276	7384966	127621550	760	66383											
ARNTL	406	broad.mit.edu	37	chr11	13407083	13407083	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggttttttcttactctgaCcatgtctgtctaacagttcc	7	10	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13407083	T	T	13407083	1	4	59	0	1	0	0	0	0	0	0	0	971	522	18	4		4	ARNTL	11	13407083	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6022117	13407083	121599433	761	66384											
SPON1	10418	broad.mit.edu	37	chr11	14195160	14195160	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgctctgtttttcccccatCtttgtggttttatctacctt	5	12	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14195160	A	A	14195160	1	1	59	0	1	0	0	0	0	0	0	0	15200	928	32	3		3	SPON1	11	14195160	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	788077	14195160	120811356	762	66385											
SPON1	10418	broad.mit.edu	37	chr11	14263410	14263410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatgctttgcctgcagaCatgtgaatgttggggtgtct	14	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14263410	A	A	14263410	1	1	59	0	1	0	0	0	0	0	0	0	15200	493	17	3		3	SPON1	11	14263410	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	68250	14263410	120743106	763	66386											
INSC	387755	broad.mit.edu	37	chr11	15247237	15247237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggaagtcttcctactgGcctctgcggcccttgccaac	11	15	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15247237	T	T	15247237	3	4	59	1	0	0	0	0	1	0	0	0	7834	1203	42	3	1208	3	INSC	11	15247237	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	983827	15247237	119759279	764	66387											
SOX6	55553	broad.mit.edu	37	chr11	16036488	16036488	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actagagaaaagccactcacCctctgcatcttctggccgag	8	14	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16036488	G	G	16036488	3	3	59	1	0	0	0	0	1	0	0	0	15069	637	22	4	770	4	SOX6	11	16036488	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	789251	16036488	118970028	765	66388											
MRGPRX3	117195	broad.mit.edu	37	chr11	18158601	18158601	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acccccaccttttgataggtGacttattctctgcgagtctc	7	13	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18158601	T	T	18158601	1	4	59	0	1	0	0	0	0	0	0	0	9862	1305	45	3		3	MRGPRX3	11	18158601	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2122113	18158601	116847915	766	66389											
MRGPRX2	117194	broad.mit.edu	37	chr11	19077943	19077943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccccaggccggggtggttgGatccatgctcagaaaacctc	12	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19077943	T	T	19077943	3	4	59	1	0	0	0	0	1	0	0	0	9861	1174	41	3	989	3	MRGPRX2	11	19077943	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	919342	19077943	115928573	767	66390											
NAV2	89797	broad.mit.edu	37	chr11	20101754	20101754	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagaagcggaagaactGggtgagtgcacatccactct	13	8	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20101754	C	C	20101754	3	2	59	1	0	0	0	0	1	0	0	0	10278	1362	47	4	5531	4	NAV2	11	20101754	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1023811	20101754	114904762	768	66391											
PRMT3	10196	broad.mit.edu	37	chr11	20529995	20529995	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acactaccttgtagtttttaAtgtgggggtagagtgggtca	13	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20529995	T	T	20529995	1	4	59	0	1	0	0	0	0	0	0	0	12644	116	4	5		5	PRMT3	11	20529995	3'UTR	SNP	A	TCGA-17-Z028-01A-01W-0746-08	428241	20529995	114476521	769	66392											
NELL1	4745	broad.mit.edu	37	chr11	20699739	20699739	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgctgtcttgagtgtttaGatatgcagggggtattattc	13	4	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20699739	C	C	20699739	1	2	59	0	1	0	0	0	0	0	0	0	10428	957	33	4		4	NELL1	11	20699739	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	169744	20699739	114306777	770	66393											
NELL1	4745	broad.mit.edu	37	chr11	20907025	20907025	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagaccctccagataccaAccttcccccaggaatcaatt	5	15	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20907025	C	C	20907025	3	2	59	1	0	0	0	0	1	0	0	0	10428	43	2	5	560	5	NELL1	11	20907025	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	207286	20907025	114099491	771	66394											
LUZP2	338645	broad.mit.edu	37	chr11	25098977	25098977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttgttttatttcgtttGtgtcaaaaagcatttattgg	9	3	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25098977	T	T	25098977	1	4	59	0	1	0	0	0	0	0	0	0	9174	1392	48	3		3	LUZP2	11	25098977	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4191952	25098977	109907539	772	66395											
PAX6	5080	broad.mit.edu	37	chr11	31823443	31823443	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattgtccagcacttggacTtttgcatctgcatgggtcta	10	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31823443	C	C	31823443	1	2	59	0	1	0	0	0	0	0	0	0	11577	1606	56	5		5	PAX6	11	31823443	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	6724466	31823443	103183073	773	66396											
WT1	7490	broad.mit.edu	37	chr11	32410743	32410743	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctgttgacacaattgccAgtcagagacacttgcaacaa	7	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32410743	T	T	32410743	1	4	59	0	1	0	0	0	0	0	0	0	17535	203	7	5		5	WT1	11	32410743	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	587300	32410743	102595773	774	66397											
C11orf41	25758	broad.mit.edu	37	chr11	33622062	33622062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccaagatggtgcttcccGccctcccagctccgcctact	7	18	0	1	rs77753071		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33622062	T	T	33622062	1	4	59	0	1	0	0	0	0	0	0	0	1652	1102	38	3		3	C11orf41	11	33622062	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1211319	33622062	101384454	775	66398											
LRRC4C	57689	broad.mit.edu	37	chr11	40136113	40136113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctttccatgggtgtgtctCccgtaatctcatcatccaca	8	13	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40136113	A	A	40136113	3	1	59	1	0	0	0	0	1	0	0	0	9095	855	30	3	196	3	LRRC4C	11	40136113	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6514051	40136113	94870403	776	66399											
CKAP5	9793	broad.mit.edu	37	chr11	46765563	46765563	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagggtgccgggggagTggggcagcttcatttgcgac	19	9	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46765563	A	A	46765563	1	1	59	0	1	0	0	0	0	0	0	0	3476	1711	59	5		5	CKAP5	11	46765563	3'UTR	SNP	T	TCGA-17-Z028-01A-01W-0746-08	6629450	46765563	88240953	777	66400											
FOLH1	2346	broad.mit.edu	37	chr11	49175882	49175882	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacagcataatctcgacaatCaaaagggagcactatggaat	8	8	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49175882	G	G	49175882	3	3	59	1	0	0	0	0	1	0	0	0	6037	826	29	4	482	4	FOLH1	11	49175882	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2410319	49175882	85830634	778	66401											
OR5L1	219437	broad.mit.edu	37	chr11	55578881	55578881	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagccaaaactaaaatttaGactatataatggagaataat	5	5	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55578881	T	T	55578881	1	4	59	0	1	0	0	0	0	0	0	0	11264	957	33	3		3	OR5L1	11	55578881	5'Flank	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6402999	55578881	79427635	779	66402											
SPRYD5	84767	broad.mit.edu	37	chr11	55658777	55658777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatctggcaaatattattGggaggttcatatgggggact	12	6	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55658777	T	T	55658777	3	4	59	1	0	0	0	0	1	0	0	0	15229	1357	47	2	1050	2	SPRYD5	11	55658777	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	79896	55658777	79347739	780	66403											
OR5M1	390168	broad.mit.edu	37	chr11	56381041	56381041	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctctctgattcagatttGgcatttgtttcatccattta	5	8	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56381041	C	C	56381041	1	2	59	0	1	0	0	0	0	0	0	0	11266	1363	47	4		4	OR5M1	11	56381041	5'Flank	SNP	G	TCGA-17-Z028-01A-01W-0746-08	722264	56381041	78625475	781	66404											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57077082	57077082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgagtgccccatccggcaCgtgggcagtgctaggactga	14	14	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57077082	A	A	57077082	3	1	59	1	0	0	0	0	1	0	0	0	16443	536	19	3	2110	3	TNKS1BP1	11	57077082	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	696041	57077082	77929434	782	66405											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57080341	57080341	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgggcaaggctgcctccctGgtagccagggggagagggga	19	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57080341	C	C	57080341	2	2	59	1	0	0	0	0	0	0	0	1	16443	1335	47	4		4	TNKS1BP1	11	57080341	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3259	57080341	77926175	783	66406											
OR9Q1	219956	broad.mit.edu	37	chr11	57815808	57815808	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgtatacatgtactgaaAtatcacactgtatctcatga	5	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57815808	T	T	57815808	1	4	59	0	1	0	0	0	0	0	0	0	11349	116	4	5		5	OR9Q1	11	57815808	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	735467	57815808	77190708	784	66407											
OR5B17	219965	broad.mit.edu	37	chr11	58126124	58126124	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagcctatagccagacaaGcacacacacgtgttgtcatg	8	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58126124	A	A	58126124	3	1	59	1	0	0	0	0	1	0	0	0	11243	971	34	4	527	4	OR5B17	11	58126124	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	310316	58126124	76880392	785	66408											
OR5B2	390190	broad.mit.edu	37	chr11	58189978	58189978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaagtagatgaagattaCtgtcccatagaagacggaga	11	7	0	6			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58189978	A	A	58189978	3	1	59	1	0	0	0	0	1	0	0	0	11244	565	20	3	176	3	OR5B2	11	58189978	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	63854	58189978	76816538	786	66409											
GLYATL2	219970	broad.mit.edu	37	chr11	58604937	58604937	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgttcttgcataggtcTagagtgctagagattcaatt	9	5	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58604937	A	A	58604937	1	1	59	0	1	0	0	0	0	0	0	0	6545	1537	53	5		5	GLYATL2	11	58604937	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	414959	58604937	76401579	787	66410											
OSBP	5007	broad.mit.edu	37	chr11	59344401	59344401	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttccatcagtctctggtCaggtcgtaaccggctgtctg	10	11	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59344401	G	G	59344401	3	3	59	1	0	0	0	0	1	0	0	0	11367	826	29	4	273	4	OSBP	11	59344401	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	739464	59344401	75662115	788	66411											
MS4A10	341116	broad.mit.edu	37	chr11	60559882	60559882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaggggtgattgtgaggGcacttctccaggacttgcta	14	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60559882	T	T	60559882	1	4	59	0	1	0	0	0	0	0	0	0	9949	1218	42	3		3	MS4A10	11	60559882	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1215481	60559882	74446634	789	66412											
CCDC87	55231	broad.mit.edu	37	chr11	66358918	66358918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggacaggaaggtcgaCcagtctttatctgctgcagg	14	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66358918	A	A	66358918	3	1	59	1	0	0	0	0	1	0	0	0	2890	508	18	3	984	3	CCDC87	11	66358918	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5799036	66358918	68647598	790	66413											
MTL5	9633	broad.mit.edu	37	chr11	68506352	68506352	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgattctttttttccCtaaaggtttacatcaccatc	3	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68506352	G	G	68506352	1	3	59	0	1	0	0	0	0	0	0	0	10030	696	24	4		4	MTL5	11	68506352	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2147434	68506352	66500164	791	66414											
IGHMBP2	3508	broad.mit.edu	37	chr11	68673760	68673760	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttactggcattcagaccgtGacttgtaccctcgtaaagac	8	11	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68673760	T	T	68673760	1	4	59	0	1	0	0	0	0	0	0	0	7661	1305	45	3		3	IGHMBP2	11	68673760	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	167408	68673760	66332756	792	66415											
ARAP1	116985	broad.mit.edu	37	chr11	72410246	72410246	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatcctctgccccctccgCactgccttggcgcttgtcct	8	20	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72410246	G	G	72410246	1	3	59	0	1	0	0	0	0	0	0	0	840	725	25	4		4	ARAP1	11	72410246	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3736486	72410246	62596270	793	66416											
MYO7A	4647	broad.mit.edu	37	chr11	76841710	76841710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagcaggtcagtgttccCacctctttgggtggcctgtc	11	13	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76841710	A	A	76841710	1	1	59	0	1	0	0	0	0	0	0	0	10176	609	21	2		2	MYO7A	11	76841710	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4431464	76841710	58164806	794	66417											
ODZ4	26011	broad.mit.edu	37	chr11	78413266	78413266	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggctgactccagggttgcGtggatggccaccttgcttag	15	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78413266	C	C	78413266	3	2	59	1	0	0	0	0	1	0	0	0	10932	1136	40	4	3945	4	ODZ4	11	78413266	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1571556	78413266	56593250	795	66418											
GRM5	2915	broad.mit.edu	37	chr11	88449984	88449985	+	Intron	DEL	TC	-	-													agttgagaagtacttaccatTctcttttaactgtcacttag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88449985	-	-	88449984	6	5	59	0	1	1	0	1	0	0	0	0	6866	1798	62	0		0	GRM5	11	88449984	Intron	DEL	TC	TCGA-17-Z028-01A-01W-0746-08	10036718	88449984	46556532	796	66419											
FOLH1B	219595	broad.mit.edu	37	chr11	89405080	89405080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtcattctgggaggtcaCcgggactcatgggtgtttgg	15	7	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89405080	A	A	89405080	3	1	59	1	0	0	0	0	1	0	0	0	6038	506	18	3	217	3	FOLH1B	11	89405080	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	955096	89405080	45601436	797	66420											
FAT3	120114	broad.mit.edu	37	chr11	92257911	92257911	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactccaccattgaggtctAcattgaagttgaagatgtga	9	8	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92257911	G	G	92257911	3	3	59	1	0	0	0	0	1	0	0	0	5748	391	14	5	3410	5	FAT3	11	92257911	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2852831	92257911	42748605	798	66421											
HEPHL1	341208	broad.mit.edu	37	chr11	93779202	93779202	+	Intron	DEL	T	-	-													atatatttatcttctctctgTctgcttctccatccatctcc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93779202	-	-	93779202	6	5	59	0	1	1	0	1	0	0	0	0	7122	1682	58	0		0	HEPHL1	11	93779202	Intron	DEL	T	TCGA-17-Z028-01A-01W-0746-08	1521291	93779202	41227314	799	66422											
GPR83	10888	broad.mit.edu	37	chr11	94113409	94113409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttattggcaaggggagccCtctggccatcattcttctct	11	11	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94113409	A	A	94113409	3	1	59	1	0	0	0	0	1	0	0	0	6778	681	24	2	97	2	GPR83	11	94113409	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	334207	94113409	40893107	800	66423											
CNTN5	53942	broad.mit.edu	37	chr11	99632086	99632086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacatgtgccatgctggtgCgctgcacccactaacttgtc	9	13	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99632086	A	A	99632086	1	1	59	0	1	0	0	0	0	0	0	0	3676	783	27	3		3	CNTN5	11	99632086	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5518677	99632086	35374430	801	66424											
CNTN5	53942	broad.mit.edu	37	chr11	99786906	99786907	+	Intron	DNP	TG	CT	CT													agtaggatctcattctttgcTgctgctgctgctctcttttg							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	99786907	CT	CT	99786906	1	2	59	0	1	0	0	0	0	0	0	0	3676	1595	55	5		5	CNTN5	11	99786906	Intron	DNP	TG	TCGA-17-Z028-01A-01W-0746-08	154820	99786906	35219610	802	66425											
CNTN5	53942	broad.mit.edu	37	chr11	99827611	99827611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccggcggttcatctcccaGgagacaggcaacctttatat	10	12	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99827611	T	T	99827611	3	4	59	1	0	0	0	0	1	0	0	0	3676	991	35	2	769	2	CNTN5	11	99827611	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	40705	99827611	35178905	803	66426											
CNTN5	53942	broad.mit.edu	37	chr11	100061967	100061967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggttctgctgaaattataGcttcgctatctgtaaaaggt	9	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100061967	T	T	100061967	3	4	59	1	0	0	0	0	1	0	0	0	3676	971	34	3	1736	3	CNTN5	11	100061967	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	234356	100061967	34944549	804	66427											
TRPC6	7225	broad.mit.edu	37	chr11	101323842	101323842	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttccttcagttcccctttGaaagcaagagtgataagaag	8	8	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101323842	C	C	101323842	1	2	59	0	1	0	0	0	0	0	0	0	16708	1305	45	4		4	TRPC6	11	101323842	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1261875	101323842	33682674	805	66428											
TRPC6	7225	broad.mit.edu	37	chr11	101359687	101359687	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctgcatggagcaaacCagtaaatgagagccaggaag	12	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101359687	T	T	101359687	4	4	59	1	0	0	0	0	0	1	0	0	16708	595	21	4	1561	4	TRPC6	11	101359687	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	35845	101359687	33646829	806	66429											
MMP3	4314	broad.mit.edu	37	chr11	102713683	102713683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttttaggtcactcttaCaatttttactatagctatct	4	7	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102713683	A	A	102713683	1	1	59	0	1	0	0	0	0	0	0	0	9760	493	17	3		3	MMP3	11	102713683	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1353996	102713683	32292833	807	66430											
CASP1	834	broad.mit.edu	37	chr11	104954313	104954313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccattgtggaagagtgtGtggtgattcatcaaagatta	11	5	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104954313	A	A	104954313	1	1	59	0	1	0	0	0	0	0	0	0	2694	1392	48	4		4	CASP1	11	104954313	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2240630	104954313	30052203	808	66431											
CARD18	59082	broad.mit.edu	37	chr11	105010674	105010674	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatgaactgtgcccataagAaaattgctttaccattcctt	6	10	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105010674	C	C	105010674	1	2	59	0	1	0	0	0	0	0	0	0	2675	261	9	5		5	CARD18	11	105010674	5'Flank	SNP	A	TCGA-17-Z028-01A-01W-0746-08	56361	105010674	29995842	809	66432											
GRIA4	2893	broad.mit.edu	37	chr11	105795480	105795480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttttatgcagcaaggatGtgacatttcacccaggttag	10	8	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105795480	T	T	105795480	3	4	59	1	0	0	0	0	1	0	0	0	6836	1377	48	3	1911	3	GRIA4	11	105795480	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	784806	105795480	29211036	810	66433											
GUCY1A2	2977	broad.mit.edu	37	chr11	106842437	106842437	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatatatatatgagttagtCtacacacatatattctcttg	5	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106842437	A	A	106842437	1	1	59	0	1	0	0	0	0	0	0	0	6958	928	32	3		3	GUCY1A2	11	106842437	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1046957	106842437	28164079	811	66434											
ELMOD1	55531	broad.mit.edu	37	chr11	107518319	107518319	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggacttctgggactgtaCaatttgcagtaagtaaaatg	11	5	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107518319	A	A	107518319	4	1	59	1	0	0	0	0	0	1	0	0	5110	489	17	3	568	3	ELMOD1	11	107518319	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	675882	107518319	27488197	812	66435											
C11orf65	160140	broad.mit.edu	37	chr11	108302427	108302427	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgataaagtaatcacatTttatggaaaaatataggatg	7	2	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108302427	G	G	108302427	1	3	59	0	1	0	0	0	0	0	0	0	1667	1856	64	5		5	C11orf65	11	108302427	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	784108	108302427	26704089	813	66436											
DLAT	1737	broad.mit.edu	37	chr11	111909915	111909915	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtaaacttttaatctttcAgaccagtctttgaagtggtg	8	6	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111909915	T	T	111909915	1	4	59	0	1	0	0	0	0	0	0	0	4589	203	7	5		5	DLAT	11	111909915	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3607488	111909915	23096601	814	66437											
TTC12	54970	broad.mit.edu	37	chr11	113236795	113236795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacccctgtgatctttaggGtaccccaatgccacagccac	7	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113236795	T	T	113236795	1	4	59	0	1	0	0	0	0	0	0	0	16805	1276	44	3		3	TTC12	11	113236795	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1326880	113236795	21769721	815	66438											
ANKK1	255239	broad.mit.edu	37	chr11	113267005	113267005	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggggccgggaggggagatGactgggcactcctgggagct	21	8	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113267005	T	T	113267005	1	4	59	0	1	0	0	0	0	0	0	0	631	1305	45	3		3	ANKK1	11	113267005	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	30210	113267005	21739511	816	66439											
TMPRSS4	56649	broad.mit.edu	37	chr11	117984017	117984017	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcaactggaaggtgcgGgcaggctcagacaaactggg	16	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117984017	T	T	117984017	2	4	59	1	0	0	0	0	0	0	0	1	16372	1219	43	2		2	TMPRSS4	11	117984017	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4717012	117984017	17022499	817	66440											
GRIK4	2900	broad.mit.edu	37	chr11	120838160	120838160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccttggaaggaacctagGtataaagtgggctggcgggg	18	7	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120838160	T	T	120838160	1	4	59	0	1	0	0	0	0	0	0	0	6842	1276	44	3		3	GRIK4	11	120838160	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2854143	120838160	14168356	818	66441											
SORL1	6653	broad.mit.edu	37	chr11	121360805	121360805	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatgattcaggaacatgtCaagtccttttcttggtaagt	8	7	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121360805	G	G	121360805	2	3	59	1	0	0	0	0	0	0	0	1	15048	813	29	4		4	SORL1	11	121360805	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	522645	121360805	13645711	819	66442											
BSX	390259	broad.mit.edu	37	chr11	122849973	122849973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcctcccgcccacctgcGtctcggacaggctgagggcc	11	19	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122849973	T	T	122849973	3	4	59	1	0	0	0	0	1	0	0	0	1544	1145	40	3	253	3	BSX	11	122849973	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1489168	122849973	12156543	820	66443											
HSPA8	3312	broad.mit.edu	37	chr11	122928361	122928361	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcttaactttttaaaaCtgccacagaatttgctacga	6	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122928361	A	A	122928361	1	1	59	0	1	0	0	0	0	0	0	0	7485	580	20	3		3	HSPA8	11	122928361	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	78388	122928361	12078155	821	66444											
GRAMD1B	57476	broad.mit.edu	37	chr11	123468937	123468937	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgtagtttccacagatctCacagttgtagttgatattta	9	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123468937	T	T	123468937	1	4	59	0	1	0	0	0	0	0	0	0	6814	841	29	4		4	GRAMD1B	11	123468937	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	540576	123468937	11537579	822	66445											
GRAMD1B	57476	broad.mit.edu	37	chr11	123469695	123469695	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgatataatccagcttctCagatgccttcaggttaatgt	8	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123469695	G	G	123469695	1	3	59	0	1	0	0	0	0	0	0	0	6814	841	29	4		4	GRAMD1B	11	123469695	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	758	123469695	11536821	823	66446											
GRAMD1B	57476	broad.mit.edu	37	chr11	123471181	123471181	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttttccaatctagcacttCttcacttcgtttggggcccg	7	13	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123471181	T	T	123471181	2	4	59	1	0	0	0	0	0	0	0	1	6814	912	32	4		4	GRAMD1B	11	123471181	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1486	123471181	11535335	824	66447											
OR10S1	219873	broad.mit.edu	37	chr11	123847658	123847658	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggagaaggcccgctgccgGccctgggctgtgcggatgcg	20	12	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123847658	C	C	123847658	2	2	59	1	0	0	0	0	0	0	0	1	11012	1190	42	4		4	OR10S1	11	123847658	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	376477	123847658	11158858	825	66448											
OR10G4	390264	broad.mit.edu	37	chr11	123886982	123886982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcacctcagatgggaggcGcagagcctttcagacctgtg	13	13	2	3	rs145730171		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123886982	T	T	123886982	3	4	59	1	0	0	0	0	1	0	0	0	10995	1087	38	3	703	3	OR10G4	11	123886982	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	39324	123886982	11119534	826	66449											
ROBO4	54538	broad.mit.edu	37	chr11	124757413	124757413	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggggaagagaagcctGggtgtgagaacagtggcatc	16	8	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124757413	T	T	124757413	1	4	59	0	1	0	0	0	0	0	0	0	13627	1363	47	2		2	ROBO4	11	124757413	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	870431	124757413	10249103	827	66450											
CDON	50937	broad.mit.edu	37	chr11	125851151	125851151	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatttatctgacttgctccTgagagagtggtgtagtccac	10	10	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125851151	A	A	125851151	2	1	59	1	0	0	0	0	0	0	0	1	3200	1567	55	5		5	CDON	11	125851151	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1093738	125851151	9155365	828	66451											
ADAMTS15	170689	broad.mit.edu	37	chr11	130331582	130331582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcctggagggtgggagaCgtgtgtctttgcccccttgt	17	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130331582	T	T	130331582	1	4	59	0	1	0	0	0	0	0	0	0	260	551	19	4		4	ADAMTS15	11	130331582	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4480431	130331582	4674934	829	66452											
NTM	50863	broad.mit.edu	37	chr11	131350899	131350899	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacagtggggtagaagtaGggagggtggtagaagtgtat	20	2	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131350899	A	A	131350899	1	1	59	0	1	0	0	0	0	0	0	0	10794	1015	35	4		4	NTM	11	131350899	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1019317	131350899	3655617	830	66453											
NTM	50863	broad.mit.edu	37	chr11	131723550	131723550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatcattgatggatattaGgttggttccatgtctttgct	9	6	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131723550	T	T	131723550	1	4	59	0	1	0	0	0	0	0	0	0	10794	1015	35	2		2	NTM	11	131723550	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	372651	131723550	3282966	831	66454											
NTM	50863	broad.mit.edu	37	chr11	131818017	131818017	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatcccagcactttgggAggccgaggtgggctgatcac	14	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131818017	T	T	131818017	1	4	59	0	1	0	0	0	0	0	0	0	10794	319	11	5		5	NTM	11	131818017	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	94467	131818017	3188499	832	66455											
NTM	50863	broad.mit.edu	37	chr11	132098671	132098671	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgctgacatgtcttctctCtgcatcaccagtttcctaga	7	12	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132098671	A	A	132098671	1	1	59	0	1	0	0	0	0	0	0	0	10794	928	32	3		3	NTM	11	132098671	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	280654	132098671	2907845	833	66456											
NTM	50863	broad.mit.edu	37	chr11	132187790	132187790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctcactcccccaggagGgctgggaaggggaaagaaag	15	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132187790	T	T	132187790	1	4	59	0	1	0	0	0	0	0	0	0	10794	1247	43	2		2	NTM	11	132187790	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	89119	132187790	2818726	834	66457											
NTM	50863	broad.mit.edu	37	chr11	132205042	132205042	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcttctcaaattttgatGtgagtgccacttccccaccc	6	15	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132205042	T	T	132205042	1	4	59	0	1	0	0	0	0	0	0	0	10794	1392	48	3		3	NTM	11	132205042	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	17252	132205042	2801474	835	66458											
KCNA5	3741	broad.mit.edu	37	chr12	5154195	5154195	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccagcctcccgcgccCgcccctggggccaacggcag	11	23	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5154195	T	T	5154195	2	4	59	1	0	0	0	0	0	0	0	1	8076	639	23	4		4	KCNA5	12	5154195	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08		5154195	128697700	836	66459											
VWF	7450	broad.mit.edu	37	chr12	6105471	6105471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaggcaggtgtgaccaaGttgcacacagataaatacag	11	8	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6105471	T	T	6105471	1	4	59	0	1	0	0	0	0	0	0	0	17373	1044	36	3		3	VWF	12	6105471	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	951276	6105471	127746424	837	66460											
GNB3	2784	broad.mit.edu	37	chr12	6952885	6952885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgaacattgctggtgCtggggcttgggagtgggccc	19	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6952885	T	T	6952885	1	4	59	0	1	0	0	0	0	0	0	0	6583	812	28	4		4	GNB3	12	6952885	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	847414	6952885	126899010	838	66461											
SLC2A3	6515	broad.mit.edu	37	chr12	8085593	8085593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtcaatacctgccaaagcGgttgacgaagagtccgacgg	12	10	1	2	rs146026720		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8085593	T	T	8085593	3	4	59	1	0	0	0	0	1	0	0	0	14659	1116	39	1	1263	1	SLC2A3	12	8085593	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1132708	8085593	125766302	839	66462											
A2M	2	broad.mit.edu	37	chr12	9264832	9264832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaaatatttttcatgaGcccccaaacccaaagtaggc	6	11	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9264832	T	T	9264832	1	4	59	0	1	0	0	0	0	0	0	0	4	986	34	3		3	A2M	12	9264832	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1179239	9264832	124587063	840	66463											
PZP	5858	broad.mit.edu	37	chr12	9311070	9311070	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaacagccattgtccttCtgcatctgggagagccacgt	10	12	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9311070	A	A	9311070	3	1	59	1	0	0	0	0	1	0	0	0	12977	912	32	3	1252	3	PZP	12	9311070	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	46238	9311070	124540825	841	66464											
CLEC9A	283420	broad.mit.edu	37	chr12	10205373	10205373	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgtcttccaacaaatgTtcaggtaaccagttctaact	6	10	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10205373	C	C	10205373	2	2	59	1	0	0	0	0	0	0	0	1	3554	1731	60	5		5	CLEC9A	12	10205373	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	894303	10205373	123646522	842	66465											
PLBD1	79887	broad.mit.edu	37	chr12	14706144	14706144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacggggcagtgaggtaaccCtccaaaaagccagccacaaa	10	12	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14706144	A	A	14706144	3	1	59	1	0	0	0	0	1	0	0	0	12120	680	24	2	1383	2	PLBD1	12	14706144	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4500771	14706144	119145751	843	66466											
GUCY2C	2984	broad.mit.edu	37	chr12	14796519	14796519	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attacagacccttttttggaGgtaaaatggaattgcagcca	9	7	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14796519	A	A	14796519	3	1	59	1	0	0	0	0	1	0	0	0	6961	1000	35	4	1346	4	GUCY2C	12	14796519	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	90375	14796519	119055376	844	66467											
SLCO1B1	10599	broad.mit.edu	37	chr12	21392039	21392039	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatcagaaaatggaagtgtCatggatgaagcaaacttaga	11	5	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21392039	A	A	21392039	2	1	59	1	0	0	0	0	0	0	0	1	14837	813	29	3		3	SLCO1B1	12	21392039	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6595520	21392039	112459856	845	66468											
KIAA0528	9847	broad.mit.edu	37	chr12	22635520	22635520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaacatattttcacccaCtgtgatctgaattcttagtc	4	11	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22635520	A	A	22635520	3	1	59	1	0	0	0	0	1	0	0	0	8252	565	20	3	1342	3	KIAA0528	12	22635520	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1243481	22635520	111216375	846	66469											
SOX5	6660	broad.mit.edu	37	chr12	23797267	23797267	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaatccaggccaataccTggactacagtgggaaagatc	10	11	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23797267	A	A	23797267	1	1	59	0	1	0	0	0	0	0	0	0	15068	1595	55	5		5	SOX5	12	23797267	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1161747	23797267	110054628	847	66470											
LRMP	4033	broad.mit.edu	37	chr12	25232546	25232546	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatacactatatataatAttatgtgcatagtattcgca	4	5	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25232546	G	G	25232546	1	3	59	0	1	0	0	0	0	0	0	0	9037	464	16	5		5	LRMP	12	25232546	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1435279	25232546	108619349	848	66471											
PPFIBP1	8496	broad.mit.edu	37	chr12	27786365	27786365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgacatgttggctgcagcGttggagcagatggatggtat	16	5	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27786365	T	T	27786365	2	4	59	1	0	0	0	0	0	0	0	1	12409	1132	40	3		3	PPFIBP1	12	27786365	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2553819	27786365	106065530	849	66472											
OVCH1	341350	broad.mit.edu	37	chr12	29598179	29598180	+	Intron	DNP	CC	AA	AA													agtaatattgatttctttagCctttacaagtttataaaata							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29598180	AA	AA	29598179	1	1	59	0	1	0	0	0	0	0	0	0	11417	754	26	3		3	OVCH1	12	29598179	Intron	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	1811814	29598179	104253716	850	66473											
OVCH1	341350	broad.mit.edu	37	chr12	29617462	29617462	+	Frame_Shift_Del	DEL	G	-	-													gcactgatgcttccccatccGgtcacagcacagatctccga					rs117919494	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29617462	-	-	29617462	7	5	59	1	0	1	0	1	0	0	0	0	11417	1103	39	0	1345	0	OVCH1	12	29617462	Frame_Shift_Del	DEL	G	TCGA-17-Z028-01A-01W-0746-08	19283	29617462	104234433	851	66474											
DDX11	1663	broad.mit.edu	37	chr12	31254893	31254893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaagggtggcctgctgGgccgtctggctgccaggaag	20	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31254893	T	T	31254893	3	4	59	1	0	0	0	0	1	0	0	0	4376	1232	43	2	2257	2	DDX11	12	31254893	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1637431	31254893	102597002	852	66475											
C12orf35	55196	broad.mit.edu	37	chr12	32134160	32134160	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcctcacacacttcagtaGaaagaataacatatgcaaat	6	9	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32134160	T	T	32134160	4	4	59	1	0	0	0	0	0	1	0	0	1695	943	33	3	273	3	C12orf35	12	32134160	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	879267	32134160	101717735	853	66476											
YAF2	10138	broad.mit.edu	37	chr12	42554667	42554667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttaaactagcttttccCtctaccaaatttctgagcat	3	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42554667	A	A	42554667	1	1	59	0	1	0	0	0	0	0	0	0	17592	696	24	2		2	YAF2	12	42554667	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	10420507	42554667	91297228	854	66477											
ADAMTS20	80070	broad.mit.edu	37	chr12	43826126	43826126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgctccattcactagcaGcccaactgggacaggaaaat	8	14	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43826126	T	T	43826126	3	4	59	1	0	0	0	0	1	0	0	0	266	971	34	3	2730	3	ADAMTS20	12	43826126	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1271459	43826126	90025769	855	66478											
TMEM117	84216	broad.mit.edu	37	chr12	44403868	44403868	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgggactggagttctctcTcacagacccattagtctccc	8	14	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44403868	C	C	44403868	1	2	59	0	1	0	0	0	0	0	0	0	16154	1566	54	5		5	TMEM117	12	44403868	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	577742	44403868	89448027	856	66479											
ARID2	196528	broad.mit.edu	37	chr12	46298925	46298925	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcacatactgttactgaAgaaagcaccaagtcttaatg	6	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46298925	G	G	46298925	1	3	59	0	1	0	0	0	0	0	0	0	917	87	3	5		5	ARID2	12	46298925	3'UTR	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1895057	46298925	87552970	857	66480											
RACGAP1	29127	broad.mit.edu	37	chr12	50390950	50390950	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataatttgccaaattttatcCgctttccacatggaacacag	5	10	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50390950	T	T	50390950	3	4	59	1	0	0	0	0	1	0	0	0	13085	652	23	4	1013	4	RACGAP1	12	50390950	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4092025	50390950	83460945	858	66481											
ATF1	466	broad.mit.edu	37	chr12	51207727	51207727	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatagtgtttgtgggctttTtgccactcctttgaattagt	9	6	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51207727	C	C	51207727	1	2	59	0	1	0	0	0	0	0	0	0	1083	1856	64	5		5	ATF1	12	51207727	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	816777	51207727	82644168	859	66482											
KRT86	3892	broad.mit.edu	37	chr12	52698611	52698611	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcatgggaatgagacaCtggggactcctttccccagg	15	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52698611	T	T	52698611	1	4	59	0	1	0	0	0	0	0	0	0	8571	580	20	4		4	KRT86	12	52698611	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1490884	52698611	81153284	860	66483											
KRT85	3891	broad.mit.edu	37	chr12	52757813	52757813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctgtctccaaaacaccCctccacctgccctggctggg	7	20	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52757813	A	A	52757813	1	1	59	0	1	0	0	0	0	0	0	0	8570	638	22	2		2	KRT85	12	52757813	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	59202	52757813	81094082	861	66484											
KRT82	3888	broad.mit.edu	37	chr12	52794252	52794252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgggcggccactctgctgCcctctcgatcccttggctcc	10	18	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52794252	T	T	52794252	1	4	59	0	1	0	0	0	0	0	0	0	8567	754	26	4		4	KRT82	12	52794252	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	36439	52794252	81057643	862	66485											
KRT5	3852	broad.mit.edu	37	chr12	52910607	52910607	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggccagctccccacgctgcTcggcatccgcaatggcgttc	12	17	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52910607	A	A	52910607	3	1	59	1	0	0	0	0	1	0	0	0	8550	1551	54	5	531	5	KRT5	12	52910607	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	116355	52910607	80941288	863	66486											
KRT71	112802	broad.mit.edu	37	chr12	52946657	52946657	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggccccggccaaatccatAgcctccactcttcccgctgc	7	21	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52946657	G	G	52946657	3	3	59	1	0	0	0	0	1	0	0	0	8555	420	15	5	1402	5	KRT71	12	52946657	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	36050	52946657	80905238	864	66487											
HOXC8	3224	broad.mit.edu	37	chr12	54403118	54403118	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccaaatacaaagccggcgAgtccctggaaccggcctatt	9	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54403118	T	T	54403118	3	4	59	1	0	0	0	0	1	0	0	0	7383	304	11	5	52	5	HOXC8	12	54403118	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1456461	54403118	79448777	865	66488											
TMEM194A	23306	broad.mit.edu	37	chr12	57466502	57466502	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgaaggggaagaaagtgtCaaaatactcactaatcacca	9	7	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57466502	T	T	57466502	1	4	59	0	1	0	0	0	0	0	0	0	16239	841	29	4		4	TMEM194A	12	57466502	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3063384	57466502	76385393	866	66489											
OS9	10956	broad.mit.edu	37	chr12	58112603	58112603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgaggcaagagaatcGctcgaacccgggaggcggag	17	9	0	2	rs140284286	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58112603	T	T	58112603	1	4	59	0	1	0	0	0	0	0	0	0	11366	1102	38	3		3	OS9	12	58112603	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	646101	58112603	75739292	867	66490											
DPY19L2	283417	broad.mit.edu	37	chr12	64045436	64045436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctccggccctacagagacTgcgcggtgcattgagtccct	11	14	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64045436	A	A	64045436	1	1	59	0	1	0	0	0	0	0	0	0	4781	1595	55	5		5	DPY19L2	12	64045436	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	5932833	64045436	69806459	868	66491											
DPY19L2	283417	broad.mit.edu	37	chr12	64045545	64045545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcttcatgaataaagagCtggctgcctttacaaagaac	8	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64045545	A	A	64045545	1	1	59	0	1	0	0	0	0	0	0	0	4781	812	28	3		3	DPY19L2	12	64045545	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	109	64045545	69806350	869	66492											
PTPRB	5787	broad.mit.edu	37	chr12	70963527	70963527	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcatgatctggtactgctCcccggcctccagtctgtgga	10	13	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70963527	A	A	70963527	4	1	59	1	0	0	0	0	0	1	0	0	12904	864	30	3	3169	3	PTPRB	12	70963527	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6917982	70963527	62888368	870	66493											
PTPRB	5787	broad.mit.edu	37	chr12	71002929	71002929	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgcttgtaaatcttgaAggttacatccgtatgtggtg	10	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71002929	G	G	71002929	3	3	59	1	0	0	0	0	1	0	0	0	12904	72	3	5	5872	5	PTPRB	12	71002929	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	39402	71002929	62848966	871	66494											
TPH2	121278	broad.mit.edu	37	chr12	72372742	72372742	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctttttagaaaggtctggCttcacggtgaggccggtggc	15	9	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72372742	T	T	72372742	2	4	59	1	0	0	0	0	0	0	0	1	16526	784	28	4		4	TPH2	12	72372742	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1369813	72372742	61479153	872	66495											
OSBPL8	114882	broad.mit.edu	37	chr12	76777907	76777907	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagaaaaaagccattattCaaggaaagatgatacttaaa	8	5	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76777907	A	A	76777907	1	1	59	0	1	0	0	0	0	0	0	0	11377	841	29	3		3	OSBPL8	12	76777907	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4405165	76777907	57073988	873	66496											
NAV3	89795	broad.mit.edu	37	chr12	78392159	78392159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgcaggaagcagcagCaaggtccagggagcctctaa	13	12	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78392159	A	A	78392159	3	1	59	1	0	0	0	0	1	0	0	0	10279	709	25	3	809	3	NAV3	12	78392159	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1614252	78392159	55459736	874	66497											
PAWR	5074	broad.mit.edu	37	chr12	79986434	79986434	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaagagttttattttcctGctttagctgttcattttcat	5	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79986434	A	A	79986434	4	1	59	1	0	0	0	0	0	1	0	0	11571	1328	46	4	50	4	PAWR	12	79986434	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1594275	79986434	53865461	875	66498											
PPFIA2	8499	broad.mit.edu	37	chr12	81839380	81839380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacaaagatttcagtgcCttgagaacttcaacttcact	5	10	4	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81839380	A	A	81839380	3	1	59	1	0	0	0	0	1	0	0	0	12406	680	24	2	3356	2	PPFIA2	12	81839380	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1852946	81839380	52012515	876	66499											
MGAT4C	25834	broad.mit.edu	37	chr12	86383169	86383169	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaaagacaatcaacctccCaaacttaccagaacatagct	4	12	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86383169	G	G	86383169	1	3	59	0	1	0	0	0	0	0	0	0	9640	609	21	4		4	MGAT4C	12	86383169	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4543789	86383169	47468726	877	66500											
TMTC3	160418	broad.mit.edu	37	chr12	88542250	88542250	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctttaaaaactttatttcAaaatgacttctggggaaccc	5	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88542250	C	C	88542250	3	2	59	1	0	0	0	0	1	0	0	0	16385	130	5	5	160	5	TMTC3	12	88542250	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2159081	88542250	45309645	878	66501											
EEA1	8411	broad.mit.edu	37	chr12	93285295	93285295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcacattccaacttttaCaagaaaaacttgtgagaact	5	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93285295	A	A	93285295	1	1	59	0	1	0	0	0	0	0	0	0	4961	493	17	3		3	EEA1	12	93285295	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4743045	93285295	40566600	879	66502											
ANKS1B	56899	broad.mit.edu	37	chr12	99837588	99837588	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctacctcagaggcattatCtgtgaataaaaatagaactg	8	7	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99837588	A	A	99837588	5	1	59	1	0	0	0	0	0	0	1	0	689	927	32	3	2660	3	ANKS1B	12	99837588	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6552293	99837588	34014307	880	66503											
C12orf42	374470	broad.mit.edu	37	chr12	103696112	103696112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggtatgaggatgcttgGggagcatctccggcgccatg	18	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103696112	T	T	103696112	3	4	59	1	0	0	0	0	1	0	0	0	1701	1232	43	2	229	2	C12orf42	12	103696112	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3858524	103696112	30155783	881	66504											
POLR3B	55703	broad.mit.edu	37	chr12	106890557	106890557	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctcattgagctgctggctGgcaaggccggtgtgctggac	16	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106890557	C	C	106890557	3	2	59	1	0	0	0	0	1	0	0	0	12324	1348	47	4	2943	4	POLR3B	12	106890557	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3194445	106890557	26961338	882	66505											
RFX4	5992	broad.mit.edu	37	chr12	107114577	107114577	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccttgaagaaagtggcccAgcagttcctcttgatgtggt	12	9	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107114577	T	T	107114577	3	4	59	1	0	0	0	0	1	0	0	0	13373	188	7	5	1497	5	RFX4	12	107114577	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	224020	107114577	26737318	883	66506											
BTBD11	121551	broad.mit.edu	37	chr12	108036102	108036103	+	Intron	DNP	CC	AA	AA													ccctcctcacagtgccccttCcgtttccatccattcatccc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	108036103	AA	AA	108036102	1	1	59	0	1	0	0	0	0	0	0	0	1548	870	30	3		3	BTBD11	12	108036102	Intron	DNP	CC	TCGA-17-Z028-01A-01W-0746-08	921525	108036102	25815793	884	66507											
NAA25	80018	broad.mit.edu	37	chr12	112481006	112481006	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggtaggtacaggaccaaGgaaaggatactggaaaaaag	13	5	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112481006	A	A	112481006	3	1	59	1	0	0	0	0	1	0	0	0	10215	1000	35	4	682	4	NAA25	12	112481006	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4444904	112481006	21370889	885	66508											
TBX3	6926	broad.mit.edu	37	chr12	115120979	115120979	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccatgcttgtcccaggaatGaccggatctctcatggagag	12	11	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115120979	A	A	115120979	2	1	59	1	0	0	0	0	0	0	0	1	15781	1277	45	4		4	TBX3	12	115120979	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2639973	115120979	18730916	886	66509											
PXN	5829	broad.mit.edu	37	chr12	120650328	120650328	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtggtagtgcacctcacagTagggctgcccgtcgtgctcg	14	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120650328	C	C	120650328	3	2	59	1	0	0	0	0	1	0	0	0	12960	1638	57	5	214	5	PXN	12	120650328	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	5529349	120650328	13201567	887	66510											
KDM2B	84678	broad.mit.edu	37	chr12	121881939	121881939	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgagtgctcatccgacctgCgccggggcgcctcctcacac	11	18	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121881939	G	G	121881939	3	3	59	1	0	0	0	0	1	0	0	0	8195	768	27	4	1767	4	KDM2B	12	121881939	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1231611	121881939	11969956	888	66511											
TCTN2	79867	broad.mit.edu	37	chr12	124184347	124184347	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatcttagtgatggctggctCgaaataatacgtaagtcaaa	10	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124184347	T	T	124184347	2	4	59	1	0	0	0	0	0	0	0	1	15845	871	31	4		4	TCTN2	12	124184347	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2302408	124184347	9667548	889	66512											
PIWIL1	9271	broad.mit.edu	37	chr12	130839068	130839068	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgtgaacagcgaccctttCgtctcttgagcagcaataca	9	13	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130839068	A	A	130839068	1	1	59	0	1	0	0	0	0	0	0	0	12052	899	31	3		3	PIWIL1	12	130839068	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6654721	130839068	3012827	890	66513											
SKA3	221150	broad.mit.edu	37	chr13	21742230	21742230	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatttaggagttacacactCaaaatcatccatttttagtg	5	7	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21742230	T	T	21742230	3	4	59	1	0	0	0	0	1	0	0	0	14467	835	29	4	669	4	SKA3	13	21742230	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08		21742230	93427648	891	66514											
SACS	26278	broad.mit.edu	37	chr13	23909957	23909957	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtttaaaatgggttccCagataaagatccagaacatc	7	9	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23909957	A	A	23909957	2	1	59	1	0	0	0	0	0	0	0	1	13915	581	21	2		2	SACS	13	23909957	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2167727	23909957	91259921	892	66515											
PARP4	143	broad.mit.edu	37	chr13	25024057	25024057	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caactcaataggagagacatGacgtggggaagaatgtactc	12	7	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25024057	A	A	25024057	1	1	59	0	1	0	0	0	0	0	0	0	11557	1305	45	4		4	PARP4	13	25024057	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1114100	25024057	90145821	893	66516											
ATP12A	479	broad.mit.edu	37	chr13	25262360	25262360	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccacgttaatgcctcaccCcaagctgcaaaaatatgcag	8	13	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25262360	T	T	25262360	1	4	59	0	1	0	0	0	0	0	0	0	1126	638	22	4		4	ATP12A	13	25262360	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	238303	25262360	89907518	894	66517											
FAM123A	219287	broad.mit.edu	37	chr13	25744599	25744599	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctgcctcttcctcttggtCtgcaataatatctccacagc	5	15	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25744599	G	G	25744599	3	3	59	1	0	0	0	0	1	0	0	0	5468	913	32	4	860	4	FAM123A	13	25744599	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	482239	25744599	89425279	895	66518											
MTUS2	23281	broad.mit.edu	37	chr13	29599885	29599885	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggaagggatccatgtggGgaagcacacccggaagccac	16	10	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29599885	C	C	29599885	2	2	59	1	0	0	0	0	0	0	0	1	10060	1219	43	4		4	MTUS2	13	29599885	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3855286	29599885	85569993	896	66519											
HSPH1	10808	broad.mit.edu	37	chr13	31735706	31735706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcgagcccacgtccaacCccaccaccgacatggccggc	9	20	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31735706	A	A	31735706	3	1	59	1	0	0	0	0	1	0	0	0	7501	623	22	2	2634	2	HSPH1	13	31735706	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2135821	31735706	83434172	897	66520											
FRY	10129	broad.mit.edu	37	chr13	32757014	32757014	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgtcagaagcaaagtgTaaaaagcaagtgatttggga	13	3	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32757014	G	G	32757014	1	3	59	0	1	0	0	0	0	0	0	0	6123	1653	57	5		5	FRY	13	32757014	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1021308	32757014	82412864	898	66521											
PDS5B	23047	broad.mit.edu	37	chr13	33347329	33347329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgtgttttactctagccGtgtaggacgctccaaacaag	9	10	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33347329	T	T	33347329	3	4	59	1	0	0	0	0	1	0	0	0	11786	1145	40	3	4305	3	PDS5B	13	33347329	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	590315	33347329	81822549	899	66522											
NBEA	26960	broad.mit.edu	37	chr13	35622687	35622687	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatactttcgtaccttttctCattgccttgtaggcaattgc	7	10	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35622687	G	G	35622687	1	3	59	0	1	0	0	0	0	0	0	0	10281	841	29	4		4	NBEA	13	35622687	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2275358	35622687	79547191	900	66523											
POSTN	10631	broad.mit.edu	37	chr13	38143443	38143443	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccttttactaacctccctGaagcagtcttttaatttctt	4	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38143443	C	C	38143443	3	2	59	1	0	0	0	0	1	0	0	0	12354	1299	45	4	97	4	POSTN	13	38143443	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2520756	38143443	77026435	901	66524											
C13orf30	144809	broad.mit.edu	37	chr13	43363036	43363036	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataatttctaatataaaccCcagacctaaaaataatctct	1	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43363036	A	A	43363036	1	1	59	0	1	0	0	0	0	0	0	0	1738	638	22	2		2	C13orf30	13	43363036	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5219593	43363036	71806842	902	66525											
ENOX1	55068	broad.mit.edu	37	chr13	43798206	43798206	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccttggagtccagctgctGcatgtatgaccaaagatatt	9	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43798206	A	A	43798206	4	1	59	1	0	0	0	0	0	1	0	0	5168	1328	46	4	156	4	ENOX1	13	43798206	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	435170	43798206	71371672	903	66526											
NUFIP1	26747	broad.mit.edu	37	chr13	45553203	45553203	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttcaataatagtcttacaTaatatgccttatggtcctct	5	9	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45553203	C	C	45553203	1	2	59	0	1	0	0	0	0	0	0	0	10843	1421	49	5		5	NUFIP1	13	45553203	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1754997	45553203	69616675	904	66527											
C13orf18	80183	broad.mit.edu	37	chr13	46946391	46946391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgggtcccactgttccCtgctgctggcacctgagatt	10	12	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46946391	A	A	46946391	3	1	59	1	0	0	0	0	1	0	0	0	1733	681	24	2	1820	2	C13orf18	13	46946391	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1393188	46946391	68223487	905	66528											
SERPINE3	647174	broad.mit.edu	37	chr13	51915550	51915550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacactctctccagctcaCcctcctgctcacactcacac	2	22	5	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51915550	A	A	51915550	1	1	59	0	1	0	0	0	0	0	0	0	14226	522	18	3		3	SERPINE3	13	51915550	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4969159	51915550	63254328	906	66529											
OLFM4	10562	broad.mit.edu	37	chr13	53602862	53602862	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcagttcacacgttccCtggccactccctcttttcct	8	16	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53602862	A	A	53602862	1	1	59	0	1	0	0	0	0	0	0	0	10950	696	24	2		2	OLFM4	13	53602862	5'Flank	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1687312	53602862	61567016	907	66530											
DIAPH3	81624	broad.mit.edu	37	chr13	60707040	60707040	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagagcacaccatcaacgtTatatggttagttacaattca	7	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60707040	A	A	60707040	1	1	59	0	1	0	0	0	0	0	0	0	4560	1769	61	5		5	DIAPH3	13	60707040	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	7104178	60707040	54462838	908	66531											
KLHL1	57626	broad.mit.edu	37	chr13	70456616	70456616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgatttctgataacttcCattatgttttcctgcaggga	7	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70456616	A	A	70456616	3	1	59	1	0	0	0	0	1	0	0	0	8436	594	21	2	1248	2	KLHL1	13	70456616	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	9749576	70456616	44713262	909	66532											
DACH1	1602	broad.mit.edu	37	chr13	72131078	72131078	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttacatgatgtagagataGacttcattgtgtgattaaaa	8	3	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72131078	C	C	72131078	1	2	59	0	1	0	0	0	0	0	0	0	4253	957	33	4		4	DACH1	13	72131078	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1674462	72131078	43038800	910	66533											
GPC6	10082	broad.mit.edu	37	chr13	94611541	94611541	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcctgcctcagcctcccAagtagctgggattacaggca	9	14	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94611541	G	G	94611541	1	3	59	0	1	0	0	0	0	0	0	0	6667	145	5	5		5	GPC6	13	94611541	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	22480463	94611541	20558337	911	66534											
CLDN10	9071	broad.mit.edu	37	chr13	96229429	96229429	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgactatcagtgttaaaTactgtttactctccaaataa	5	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96229429	C	C	96229429	1	2	59	0	1	0	0	0	0	0	0	0	3503	1421	49	5		5	CLDN10	13	96229429	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1617888	96229429	18940449	912	66535											
DZIP1	22873	broad.mit.edu	37	chr13	96285432	96285432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggaccaagtctcattgCcaaaagaaaaagggagcagg	11	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96285432	A	A	96285432	1	1	59	0	1	0	0	0	0	0	0	0	4903	754	26	3		3	DZIP1	13	96285432	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	56003	96285432	18884446	913	66536											
FGF14	2259	broad.mit.edu	37	chr13	102454331	102454331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaaaacccagaggtccCtgtcaatttagcagaatttt	7	8	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102454331	A	A	102454331	1	1	59	0	1	0	0	0	0	0	0	0	5900	696	24	2		2	FGF14	13	102454331	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6168899	102454331	12715547	914	66537											
FGF14	2259	broad.mit.edu	37	chr13	103053860	103053860	+	Missense_Mutation	SNP	G	A	A													cttaagactcttgccacaaaGacactgcagcatatgcgttc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103053860	A	A	103053860	3	1	59	1	0	0	0	0	1	0	0	0	5900	942	33	4	806	4	FGF14	13	103053860	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	599529	103053860	12116018	915	66538	307	2									
FGF14	2259	broad.mit.edu	37	chr13	103053862	103053862	+	Missense_Mutation	SNP	C	A	A													taagactcttgccacaaagaCactgcagcatatgcgttcct							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103053862	A	A	103053862	3	1	59	1	0	0	0	0	1	0	0	0	5900	478	17	3	808	3	FGF14	13	103053862	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2	103053862	12116016	916	66539	307	2									
C13orf39	196541	broad.mit.edu	37	chr13	103346664	103346664	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaatttacttgaagatgtCatcgccaggaaaacaactga	8	7	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103346664	A	A	103346664	1	1	59	0	1	0	0	0	0	0	0	0	1745	841	29	3		3	C13orf39	13	103346664	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	292802	103346664	11823214	917	66540											
COL4A2	1284	broad.mit.edu	37	chr13	111158940	111158940	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggccaggagaaggcgcaCaaccaggacctgggtaggta	17	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111158940	T	T	111158940	2	4	59	1	0	0	0	0	0	0	0	1	3722	477	17	4		4	COL4A2	13	111158940	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7812276	111158940	4010938	918	66541											
POTEG	404785	broad.mit.edu	37	chr14	19563492	19563492	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgatgtatcttctcaagatCtatctggacagacggccaga	9	9	4	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19563492	G	G	19563492	3	3	59	1	0	0	0	0	1	0	0	0	12362	912	32	4	1024	4	POTEG	14	19563492	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08		19563492	87786048	919	66542											
OR4K2	390431	broad.mit.edu	37	chr14	20344724	20344724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttgatggctgccttaccCagatattctttctccacctt	5	13	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20344724	A	A	20344724	3	1	59	1	0	0	0	0	1	0	0	0	11166	595	21	2	300	2	OR4K2	14	20344724	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	781232	20344724	87004816	920	66543											
OR4K5	79317	broad.mit.edu	37	chr14	20388794	20388794	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtccaattcttcagtggtgtCtgaatttgtactgttgggac	11	7	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20388794	A	A	20388794	3	1	59	1	0	0	0	0	1	0	0	0	11167	913	32	3	31	3	OR4K5	14	20388794	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	44070	20388794	86960746	921	66544											
OR4K1	79544	broad.mit.edu	37	chr14	20404030	20404030	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcagtaatctttctttcAttgatatctgtcagtctaac	5	9	7	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20404030	G	G	20404030	3	3	59	1	0	0	0	0	1	0	0	0	11161	217	8	5	207	5	OR4K1	14	20404030	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	15236	20404030	86945510	922	66545											
RNASE9	390443	broad.mit.edu	37	chr14	21024699	21024699	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttatagtatgaggaataCgtttttgcatttcattttgc	7	5	1	1	rs147407456	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21024699	T	T	21024699	3	4	59	1	0	0	0	0	1	0	0	0	13521	536	19	4	91	4	RNASE9	14	21024699	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	620669	21024699	86324841	923	66546											
CHD8	57680	broad.mit.edu	37	chr14	21868194	21868194	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctccaataacctcctgcCtcaggtagtatagcattcgt	8	12	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21868194	T	T	21868194	3	4	59	1	0	0	0	0	1	0	0	0	3362	681	24	4	3038	4	CHD8	14	21868194	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	843495	21868194	85481346	924	66547											
PABPN1	8106	broad.mit.edu	37	chr14	23792260	23792260	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggaggctgatgcccgttcCatctatgttggcaatgtacg	12	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23792260	T	T	23792260	2	4	59	1	0	0	0	0	0	0	0	1	11462	581	21	4		4	PABPN1	14	23792260	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1924066	23792260	83557280	925	66548											
MYH7	4625	broad.mit.edu	37	chr14	23884725	23884725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggtgttctgggttggGggagggttgggcagagcagg	23	4	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23884725	T	T	23884725	1	4	59	0	1	0	0	0	0	0	0	0	10133	1247	43	2		2	MYH7	14	23884725	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	92465	23884725	83464815	926	66549											
NFATC4	4776	broad.mit.edu	37	chr14	24846005	24846005	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctggggagggggctccGgagcaggagaaatccagggg	21	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24846005	A	A	24846005	2	1	59	1	0	0	0	0	0	0	0	1	10460	1103	39	4		4	NFATC4	14	24846005	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	961280	24846005	82503535	927	66550											
FOXG1	2290	broad.mit.edu	37	chr14	29237975	29237975	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatccctgggaccagactgTaagtgaacgttttacacaca	8	11	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29237975	C	C	29237975	1	2	59	0	1	0	0	0	0	0	0	0	6067	1653	57	5		5	FOXG1	14	29237975	3'UTR	SNP	T	TCGA-17-Z028-01A-01W-0746-08	4391970	29237975	78111565	928	66551											
HEATR5A	25938	broad.mit.edu	37	chr14	31856243	31856243	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggtttctgtattaataTagtattatatatcagtctag	6	4	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31856243	C	C	31856243	1	2	59	0	1	0	0	0	0	0	0	0	7098	1421	49	5		5	HEATR5A	14	31856243	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2618268	31856243	75493297	929	66552											
NPAS3	64067	broad.mit.edu	37	chr14	34095270	34095270	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaccagaactacaacccaGaacttctgacttctacccct	3	15	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34095270	A	A	34095270	1	1	59	0	1	0	0	0	0	0	0	0	10659	957	33	4		4	NPAS3	14	34095270	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2239027	34095270	73254270	930	66553											
RALGAPA1	253959	broad.mit.edu	37	chr14	36192258	36192258	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttgtgctttttttgtttCtgttcactcagcttatccaa	5	10	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36192258	A	A	36192258	3	1	59	1	0	0	0	0	1	0	0	0	13121	912	32	3	4288	3	RALGAPA1	14	36192258	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2096988	36192258	71157282	931	66554											
MBIP	51562	broad.mit.edu	37	chr14	36785985	36785985	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggagcttgttccaatcgaTtgtaattttcaccacatcat	6	10	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36785985	C	C	36785985	3	2	59	1	0	0	0	0	1	0	0	0	9442	1493	52	5	903	5	MBIP	14	36785985	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	593727	36785985	70563555	932	66555											
SFTA3	253970	broad.mit.edu	37	chr14	36982411	36982411	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcgctaccttttgtgcactCgcgcctcgagatagcccctc	9	17	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36982411	G	G	36982411	1	3	59	0	1	0	0	0	0	0	0	0	14301	899	31	4		4	SFTA3	14	36982411	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	196426	36982411	70367129	933	66556											
SLC25A21	89874	broad.mit.edu	37	chr14	37157255	37157255	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttctacaccctaccccgaAtccatactatggtcacactg	4	16	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37157255	G	G	37157255	1	3	59	0	1	0	0	0	0	0	0	0	14598	116	4	5		5	SLC25A21	14	37157255	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	174844	37157255	70192285	934	66557											
LRFN5	145581	broad.mit.edu	37	chr14	42220070	42220070	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttctagggtacacgtgcaCaacgtgcagttttgttacat	10	8	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42220070	T	T	42220070	1	4	59	0	1	0	0	0	0	0	0	0	9028	493	17	4		4	LRFN5	14	42220070	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5062815	42220070	65129470	935	66558											
LRFN5	145581	broad.mit.edu	37	chr14	42355793	42355793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctaacattctattttGtgtcttccgttacaggctct	8	9	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42355793	T	T	42355793	1	4	59	0	1	0	0	0	0	0	0	0	9028	1392	48	3		3	LRFN5	14	42355793	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	135723	42355793	64993747	936	66559											
LRFN5	145581	broad.mit.edu	37	chr14	42356551	42356551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagttttggtggaaacccCttgcattgcaattgtgaatt	9	6	0	1	rs17854265		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356551	A	A	42356551	2	1	59	1	0	0	0	0	0	0	0	1	9028	668	24	2		2	LRFN5	14	42356551	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	758	42356551	64992989	937	66560											
FAM179B	23116	broad.mit.edu	37	chr14	45481232	45481232	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccaacaagactttcttcTgcaaagaaaaaaatttctca	4	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45481232	G	G	45481232	2	3	59	1	0	0	0	0	0	0	0	1	5551	1567	55	5		5	FAM179B	14	45481232	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3124681	45481232	61868308	938	66561											
C14orf106	55320	broad.mit.edu	37	chr14	45696990	45696990	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaattctgtagctcctggtGactcactgtgcttattactc	7	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45696990	A	A	45696990	3	1	59	1	0	0	0	0	1	0	0	0	1751	1294	45	4	1812	4	C14orf106	14	45696990	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	215758	45696990	61652550	939	66562											
SYT16	83851	broad.mit.edu	37	chr14	62541877	62541877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggagccagccaacggcGttattctgagaatctctcct	11	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62541877	T	T	62541877	3	4	59	1	0	0	0	0	1	0	0	0	15591	1145	40	3	771	3	SYT16	14	62541877	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	16844887	62541877	44807663	940	66563											
KCNH5	27133	broad.mit.edu	37	chr14	63447944	63447944	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtctttggcgcttcttgTttatactgaggaaggatatc	12	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63447944	A	A	63447944	3	1	59	1	0	0	0	0	1	0	0	0	8105	1722	60	5	2436	5	KCNH5	14	63447944	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	906067	63447944	43901596	941	66564											
SYNE2	23224	broad.mit.edu	37	chr14	64469443	64469443	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatctttattttagaatatCcaagattccatagcaaaaca	3	7	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64469443	T	T	64469443	2	4	59	1	0	0	0	0	0	0	0	1	15565	845	30	4		4	SYNE2	14	64469443	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1021499	64469443	42880097	942	66565											
MPP5	64398	broad.mit.edu	37	chr14	67799811	67799811	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatctgttcttagatctcttGaattagtgagacgacagttc	9	7	3	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67799811	C	C	67799811	1	2	59	0	1	0	0	0	0	0	0	0	9831	1305	45	4		4	MPP5	14	67799811	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3330368	67799811	39549729	943	66566											
DPF3	8110	broad.mit.edu	37	chr14	73140967	73140967	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagagcgtccacagtctgcGcaggacaccagctcttcagg	11	15	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73140967	A	A	73140967	2	1	59	1	0	0	0	0	0	0	0	1	4758	1079	38	4		4	DPF3	14	73140967	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5341156	73140967	34208573	944	66567											
FAM161B	145483	broad.mit.edu	37	chr14	74409458	74409458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtaagaaaggaccaagCaagaaacctacagggttgga	13	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74409458	A	A	74409458	1	1	59	0	1	0	0	0	0	0	0	0	5519	725	25	3		3	FAM161B	14	74409458	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1268491	74409458	32940082	945	66568											
TSHR	7253	broad.mit.edu	37	chr14	81499215	81499215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtgactgtgatcaacagCagaactcacctacactagaa	7	11	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81499215	A	A	81499215	1	1	59	0	1	0	0	0	0	0	0	0	16747	725	25	3		3	TSHR	14	81499215	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7089757	81499215	25850325	946	66569											
GPR65	8477	broad.mit.edu	37	chr14	88477441	88477441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacaactggactttctctCctgccttgtgcaaagggagt	10	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88477441	A	A	88477441	3	1	59	1	0	0	0	0	1	0	0	0	6771	855	30	3	252	3	GPR65	14	88477441	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6978226	88477441	18872099	947	66570											
TTC7B	145567	broad.mit.edu	37	chr14	91196223	91196223	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttctcccaccttcacatCtcatgggaaagcaagagagc	7	15	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91196223	T	T	91196223	1	4	59	0	1	0	0	0	0	0	0	0	16839	928	32	4		4	TTC7B	14	91196223	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2718782	91196223	16153317	948	66571											
GOLGA5	9950	broad.mit.edu	37	chr14	93299472	93299472	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactttctctttcagcttacCaataaaactttaagcaatag	3	10	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93299472	T	T	93299472	2	4	59	1	0	0	0	0	0	0	0	1	6620	581	21	4		4	GOLGA5	14	93299472	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2103249	93299472	14050068	949	66572											
KIAA1409	57578	broad.mit.edu	37	chr14	94156521	94156521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtcctggctgctgctgGgttccctcactcacaatgca	10	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94156521	T	T	94156521	3	4	59	1	0	0	0	0	1	0	0	0	8300	1232	43	2	6900	2	KIAA1409	14	94156521	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	857049	94156521	13193019	950	66573											
DDX24	57062	broad.mit.edu	37	chr14	94517574	94517574	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggctgtggctgttccggcTgtggctccttcggcttcttt	13	11	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94517574	C	C	94517574	3	2	59	1	0	0	0	0	1	0	0	0	4384	1580	55	5	40	5	DDX24	14	94517574	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	361053	94517574	12831966	951	66574											
SERPINA5	5104	broad.mit.edu	37	chr14	95053670	95053670	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccctctctgaggacaccttCtttccctttcagaacaaaga	5	15	3	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95053670	T	T	95053670	1	4	59	0	1	0	0	0	0	0	0	0	14205	928	32	4		4	SERPINA5	14	95053670	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	536096	95053670	12295870	952	66575											
DIO3	1735	broad.mit.edu	37	chr14	102028308	102028308	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgactacgcgcaagggaacCgcccgctggttctcaatttc	10	14	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102028308	T	T	102028308	3	4	59	1	0	0	0	0	1	0	0	0	4566	652	23	4	477	4	DIO3	14	102028308	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6974638	102028308	5321232	953	66576											
TECPR2	9895	broad.mit.edu	37	chr14	102916811	102916811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggagaaagggtttgaagGccagctgtcgtccagaacta	13	8	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102916811	T	T	102916811	1	4	59	0	1	0	0	0	0	0	0	0	15866	1218	42	3		3	TECPR2	14	102916811	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	888503	102916811	4432729	954	66577											
TRAF3	7187	broad.mit.edu	37	chr14	103369718	103369718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctccagaaccgcgtgaccGagctggagagcgtggacaag	14	13	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103369718	A	A	103369718	3	1	59	1	0	0	0	0	1	0	0	0	16563	1059	37	4	1121	4	TRAF3	14	103369718	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	452907	103369718	3979822	955	66578											
MKRN3	7681	broad.mit.edu	37	chr15	23811059	23811059	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctccggggaatctgctgctCcagattcagccctgccacat	9	16	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23811059	G	G	23811059	3	3	59	1	0	0	0	0	1	0	0	0	9701	855	30	4	132	4	MKRN3	15	23811059	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08		23811059	78720333	956	66579											
C15orf2	23742	broad.mit.edu	37	chr15	24922540	24922540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacaccctccttcaagcCtcccgtcacaagggagtccc	6	20	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922540	A	A	24922540	3	1	59	1	0	0	0	0	1	0	0	0	1797	681	24	2	1528	2	C15orf2	15	24922540	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1111481	24922540	77608852	957	66580											
C15orf2	23742	broad.mit.edu	37	chr15	24923778	24923778	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctggggaatccagcaaccCcagcaccagttataggctta	9	12	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24923778	G	G	24923778	3	3	59	1	0	0	0	0	1	0	0	0	1797	623	22	4	2766	4	C15orf2	15	24923778	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1238	24923778	77607614	958	66581											
BMF	90427	broad.mit.edu	37	chr15	40397991	40397991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcttgaggctgagagcaCtcaccataaaagagtcgctg	12	9	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40397991	A	A	40397991	1	1	59	0	1	0	0	0	0	0	0	0	1460	580	20	3		3	BMF	15	40397991	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	15474213	40397991	62133401	959	66582											
ZFP106	64397	broad.mit.edu	37	chr15	42742934	42742934	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccacagtgggcttgttcgaGggatttgagtgttctccagg	14	8	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42742934	C	C	42742934	2	2	59	1	0	0	0	0	0	0	0	1	17763	987	35	4		4	ZFP106	15	42742934	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2344943	42742934	59788458	960	66583											
ATP8B4	79895	broad.mit.edu	37	chr15	50303041	50303041	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaatattgaatacttaCagcaacaaattggttatttt	4	6	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50303041	A	A	50303041	5	1	59	1	0	0	0	0	0	0	1	0	1201	492	17	3	3230	3	ATP8B4	15	50303041	Splice_Site	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7560107	50303041	52228351	961	66584											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51350531	51350531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagctcatcaaagatctcGctgctggtgtcatcaatcaa	8	10	6	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51350531	T	T	51350531	3	4	59	1	0	0	0	0	1	0	0	0	16402	1078	38	3	456	3	TNFAIP8L3	15	51350531	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1047490	51350531	51180861	962	66585											
IGDCC3	9543	broad.mit.edu	37	chr15	65667452	65667452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttgcagcttggatgcgaGccttccggctgaccaccagc	11	14	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65667452	T	T	65667452	3	4	59	1	0	0	0	0	1	0	0	0	7638	971	34	3	2104	3	IGDCC3	15	65667452	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	14316921	65667452	36863940	963	66586											
DENND4A	10260	broad.mit.edu	37	chr15	66033886	66033886	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttaaaattaatcttccatCaagcatccaataaacatata	1	8	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66033886	T	T	66033886	1	4	59	0	1	0	0	0	0	0	0	0	4473	841	29	4		4	DENND4A	15	66033886	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	366434	66033886	36497506	964	66587											
MAP2K5	5607	broad.mit.edu	37	chr15	68065133	68065133	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attagaattctcagttatatAtttatgtttaacattctgtt	4	4	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68065133	G	G	68065133	1	3	59	0	1	0	0	0	0	0	0	0	9332	464	16	5		5	MAP2K5	15	68065133	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2031247	68065133	34466259	965	66588											
FEM1B	10116	broad.mit.edu	37	chr15	68570886	68570886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgtcagccagcagggagGgcagcgctccacgcccctca	12	16	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68570886	T	T	68570886	3	4	59	1	0	0	0	0	1	0	0	0	5867	1232	43	2	133	2	FEM1B	15	68570886	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	505753	68570886	33960506	966	66589											
STOML1	9399	broad.mit.edu	37	chr15	74284508	74284508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaagccgaagctcgactgCtggaagcggtcaaaatcacc	11	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74284508	A	A	74284508	3	1	59	1	0	0	0	0	1	0	0	0	15431	796	28	3	1167	3	STOML1	15	74284508	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	5713622	74284508	28246884	967	66590											
GOLGA6C	653641	broad.mit.edu	37	chr15	75562468	75562468	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaccaggagcggccagGgagggttctccccatgacaa	13	14	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75562468	C	C	75562468	3	2	59	1	0	0	0	0	1	0	0	0	6623	1223	43	4	2080	4	GOLGA6C	15	75562468	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1277960	75562468	26968924	968	66591											
IREB2	3658	broad.mit.edu	37	chr15	78763031	78763031	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtttctttttcttttcCtttttttttttttttttttt	1	5	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78763031	T	T	78763031	1	4	59	0	1	0	0	0	0	0	0	0	7896	696	24	4		4	IREB2	15	78763031	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3200563	78763031	23768361	969	66592											
ARNT2	9915	broad.mit.edu	37	chr15	80750269	80750269	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtgatcttgacttttcaGaatggacttcgatgatgaag	10	6	2	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80750269	C	C	80750269	5	2	59	1	0	0	0	0	0	0	1	0	970	956	33	4	156	4	ARNT2	15	80750269	Splice_Site	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1987238	80750269	21781123	970	66593											
BNC1	646	broad.mit.edu	37	chr15	83933374	83933374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaactcctgtgactgcagCtctcgatgaaagccctgata	9	11	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83933374	T	T	83933374	3	4	59	1	0	0	0	0	1	0	0	0	1480	797	28	4	2363	4	BNC1	15	83933374	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3183105	83933374	18598018	971	66594											
SLC28A1	9154	broad.mit.edu	37	chr15	85478468	85478468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctgtagagaggatggcCccaggtgggtggtgagtggt	19	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85478468	A	A	85478468	1	1	59	0	1	0	0	0	0	0	0	0	14645	638	22	2		2	SLC28A1	15	85478468	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1545094	85478468	17052924	972	66595											
AKAP13	11214	broad.mit.edu	37	chr15	86228000	86228000	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagaactataatttcctgCcacatagcccctccaagaaa	5	12	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86228000	T	T	86228000	3	4	59	1	0	0	0	0	1	0	0	0	449	739	26	4	5313	4	AKAP13	15	86228000	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	749532	86228000	16303392	973	66596											
AGBL1	123624	broad.mit.edu	37	chr15	86726135	86726135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagtagtgtagtggaacaGgtctatacccatagcaagag	12	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86726135	T	T	86726135	1	4	59	0	1	0	0	0	0	0	0	0	375	1015	35	2		2	AGBL1	15	86726135	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	498135	86726135	15805257	974	66597											
AGBL1	123624	broad.mit.edu	37	chr15	87572183	87572183	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtacatgtcttatggaAaatgttgctccatcatccct	7	9	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87572183	T	T	87572183	1	4	59	0	1	0	0	0	0	0	0	0	375	29	1	5		5	AGBL1	15	87572183	3'UTR	SNP	A	TCGA-17-Z028-01A-01W-0746-08	846048	87572183	14959209	975	66598											
NTRK3	4916	broad.mit.edu	37	chr15	88576314	88576314	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacgcaggacctggtgacgtCacatccggccagtttccagc	12	14	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88576314	T	T	88576314	1	4	59	0	1	0	0	0	0	0	0	0	10803	841	29	4		4	NTRK3	15	88576314	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1004131	88576314	13955078	976	66599											
ACAN	176	broad.mit.edu	37	chr15	89392931	89392931	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacgggcctcccagacccActgtcccggcaccatgcctt	9	19	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89392931	G	G	89392931	2	3	59	1	0	0	0	0	0	0	0	1	117	146	6	5		5	ACAN	15	89392931	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	816617	89392931	13138461	977	66600											
IQGAP1	8826	broad.mit.edu	37	chr15	91030665	91030665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgctgctgctgcttcGgtccacttgagaggaactag	13	11	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91030665	T	T	91030665	1	4	59	0	1	0	0	0	0	0	0	0	7884	1131	39	1		1	IQGAP1	15	91030665	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1637734	91030665	11500727	978	66601											
IGF1R	3480	broad.mit.edu	37	chr15	99500385	99500385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagaggagatggagcctgGcttccgggaggtctccttct	14	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99500385	T	T	99500385	3	4	59	1	0	0	0	0	1	0	0	0	7641	1203	42	3	3900	3	IGF1R	15	99500385	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	8469720	99500385	3031007	979	66602											
LRRK1	79705	broad.mit.edu	37	chr15	101552319	101552319	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctcagaaaacgcactcaAagaagttcccctgggacttt	7	11	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101552319	G	G	101552319	3	3	59	1	0	0	0	0	1	0	0	0	9119	14	1	5	1422	5	LRRK1	15	101552319	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2051934	101552319	979073	980	66603											
LUC7L	55692	broad.mit.edu	37	chr16	242939	242939	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcacctcctgctcagacGctcctcccgttccctctcct	6	21	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242939	A	A	242939	3	1	59	1	0	0	0	0	1	0	0	0	9169	1087	38	4	372	4	LUC7L	16	242939	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08		242939	90111814	981	66604											
CRAMP1L	57585	broad.mit.edu	37	chr16	1709950	1709950	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaggaggagcagtcgatgAcgcccccagggaaggtggtg	17	11	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1709950	T	T	1709950	3	4	59	1	0	0	0	0	1	0	0	0	3878	275	10	5	2337	5	CRAMP1L	16	1709950	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1467011	1709950	88644803	982	66605											
HAGH	3029	broad.mit.edu	37	chr16	1872326	1872326	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgggtggtgagcactgTggtcagtttcaccccgtgct	16	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1872326	G	G	1872326	3	3	59	1	0	0	0	0	1	0	0	0	7011	1696	59	5	665	5	HAGH	16	1872326	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	162376	1872326	88482427	983	66606											
ZSCAN10	84891	broad.mit.edu	37	chr16	3140535	3140535	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgggcgcaaggctctccCggcaccccaggactatctgc	12	16	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3140535	A	A	3140535	2	1	59	1	0	0	0	0	0	0	0	1	18356	639	23	1		1	ZSCAN10	16	3140535	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1268209	3140535	87214218	984	66607											
A2BP1	54715	broad.mit.edu	37	chr16	7102181	7102181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtctctcccaagacaCgggttctaaataacaggctt	7	12	2	1	rs113576127		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7102181	A	A	7102181	1	1	59	0	1	0	0	0	0	0	0	0	3	551	19	3		3	A2BP1	16	7102181	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3961646	7102181	83252572	985	66608											
TMEM186	25880	broad.mit.edu	37	chr16	8889645	8889645	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcctaaacctgtacaCcagctcttgccttgtgaatt	5	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8889645	A	A	8889645	1	1	59	0	1	0	0	0	0	0	0	0	16231	522	18	3		3	TMEM186	16	8889645	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1787464	8889645	81465108	986	66609											
GRIN2A	2903	broad.mit.edu	37	chr16	9857834	9857834	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctttcaaggtgaagtgCttggagtagagtttatactg	12	4	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9857834	G	G	9857834	3	3	59	1	0	0	0	0	1	0	0	0	6845	796	28	4	831	4	GRIN2A	16	9857834	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	968189	9857834	80496919	987	66610											
RSL1D1	26156	broad.mit.edu	37	chr16	11940535	11940535	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgctgctaaagtccagtcAttactaagaaacttacttct	5	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11940535	G	G	11940535	1	3	59	0	1	0	0	0	0	0	0	0	13811	232	8	5		5	RSL1D1	16	11940535	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2082701	11940535	78414218	988	66611											
RRN3	54700	broad.mit.edu	37	chr16	15162158	15162158	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtttaaaaaaaaaaaagaTttttttaaaggtacaaataa	5	1	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15162158	G	G	15162158	1	3	59	0	1	0	0	0	0	0	0	0	13795	1508	52	5		5	RRN3	16	15162158	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3221623	15162158	75192595	989	66612											
MYH11	4629	broad.mit.edu	37	chr16	15917148	15917148	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaggccgtgtctgcgatggCgtagatgtgaggcggcatct	17	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15917148	T	T	15917148	3	4	59	1	0	0	0	0	1	0	0	0	10125	768	27	4	5668	4	MYH11	16	15917148	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	754990	15917148	74437605	990	66613											
ACSM2B	348158	broad.mit.edu	37	chr16	20563400	20563400	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaattgaaacaaactacaAaaaattgaagtgtgcaaacc	6	6	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20563400	C	C	20563400	1	2	59	0	1	0	0	0	0	0	0	0	184	29	1	5		5	ACSM2B	16	20563400	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	4646252	20563400	69791353	991	66614											
OTOA	146183	broad.mit.edu	37	chr16	21739470	21739470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggattataggcataaGccacagtgcccaccccacag	10	13	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21739470	T	T	21739470	1	4	59	0	1	0	0	0	0	0	0	0	11396	986	34	3		3	OTOA	16	21739470	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1176070	21739470	68615283	992	66615											
HS3ST4	9951	broad.mit.edu	37	chr16	26132920	26132920	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaggctggcagcatccCtgaggcagtggtgagctggc	17	10	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26132920	T	T	26132920	1	4	59	0	1	0	0	0	0	0	0	0	7434	696	24	4		4	HS3ST4	16	26132920	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4393450	26132920	64221833	993	66616											
KIAA0556	23247	broad.mit.edu	37	chr16	27751806	27751806	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctcctgtccatgaggagCcctctctcatccaacaactg	7	17	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27751806	G	G	27751806	3	3	59	1	0	0	0	0	1	0	0	0	8253	739	26	4	2246	4	KIAA0556	16	27751806	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1618886	27751806	62602947	994	66617											
CTF1	1489	broad.mit.edu	37	chr16	30910673	30910673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggaacaaagagccagcGtgggagaggtgatcaatgag	16	6	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30910673	T	T	30910673	1	4	59	0	1	0	0	0	0	0	0	0	4041	1160	40	3		3	CTF1	16	30910673	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3158867	30910673	59444080	995	66618											
STX4	6810	broad.mit.edu	37	chr16	31046142	31046142	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttaggtggcctctgcatAcctatgggaactcagtgatg	12	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31046142	G	G	31046142	1	3	59	0	1	0	0	0	0	0	0	0	15465	406	14	5		5	STX4	16	31046142	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	135469	31046142	59308611	996	66619											
NETO2	81831	broad.mit.edu	37	chr16	47156703	47156703	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgaactgacaatctggaagGaatacatgaaaggtgttcaa	10	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47156703	C	C	47156703	1	2	59	0	1	0	0	0	0	0	0	0	10435	1189	41	4		4	NETO2	16	47156703	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	16110561	47156703	43198050	997	66620											
FTO	79068	broad.mit.edu	37	chr16	53799836	53799836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcactggagtgttttaagGtagggagcgtgtgtgtggag	17	3	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53799836	T	T	53799836	1	4	59	0	1	0	0	0	0	0	0	0	6146	1276	44	3		3	FTO	16	53799836	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6643133	53799836	36554917	998	66621											
CES1	1066	broad.mit.edu	37	chr16	55844110	55844110	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgagtttccccgctccaGttgtccacagtggatactcc	8	15	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55844110	A	A	55844110	1	1	59	0	1	0	0	0	0	0	0	0	3299	1044	36	4		4	CES1	16	55844110	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2044274	55844110	34510643	999	66622											
BBS2	583	broad.mit.edu	37	chr16	56531699	56531699	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcaaaatagacaggaaaatCcgcttctacttgaaggtctt	7	9	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56531699	T	T	56531699	3	4	59	1	0	0	0	0	1	0	0	0	1343	855	30	4	428	4	BBS2	16	56531699	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	687589	56531699	33823054	1000	66623											
RSPRY1	89970	broad.mit.edu	37	chr16	57264753	57264753	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcttctcagtcaaaaattCgagtagatgcacggaatgcc	9	10	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57264753	A	A	57264753	1	1	59	0	1	0	0	0	0	0	0	0	13824	899	31	3		3	RSPRY1	16	57264753	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	733054	57264753	33090000	1001	66624											
CNOT1	23019	broad.mit.edu	37	chr16	58608824	58608824	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttttctttagtttattacTgctgcacaaattttaaaagt	4	5	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58608824	A	A	58608824	1	1	59	0	1	0	0	0	0	0	0	0	3649	1595	55	5		5	CNOT1	16	58608824	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1344071	58608824	31745929	1002	66625											
CES3	23491	broad.mit.edu	37	chr16	67006337	67006340	+	Frame_Shift_Del	DEL	AGGC	-	-													gatcaaacctgcctgggtgaAggctgatcatggggccgagg							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67006340	-	-	67006337	7	5	59	1	0	1	0	1	0	0	0	0	3301	72	3	0	1412	0	CES3	16	67006337	Frame_Shift_Del	DEL	AGGC	TCGA-17-Z028-01A-01W-0746-08	8397513	67006337	23348416	1003	66626											
PSMB10	5699	broad.mit.edu	37	chr16	67970091	67970091	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggccgttcttttttgcgTacgggaactgggctcgggag	18	8	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67970091	A	A	67970091	1	1	59	0	1	0	0	0	0	0	0	0	12781	1653	57	5		5	PSMB10	16	67970091	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	963754	67970091	22384662	1004	66627											
CDH3	1001	broad.mit.edu	37	chr16	68720494	68720494	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaagttggagataaagttCttcttccagaatatggaggc	11	5	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68720494	T	T	68720494	1	4	59	0	1	0	0	0	0	0	0	0	3141	928	32	4		4	CDH3	16	68720494	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	750403	68720494	21634259	1005	66628											
HYDIN	54768	broad.mit.edu	37	chr16	71094281	71094281	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaactggggatgggaatgacGtggtttaatacaacaacata	12	5	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71094281	C	C	71094281	1	2	59	0	1	0	0	0	0	0	0	0	7537	1160	40	4		4	HYDIN	16	71094281	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2373787	71094281	19260472	1006	66629											
CHST4	10164	broad.mit.edu	37	chr16	71570496	71570496	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagcaggtggctttggccaGaaggggaatagaaggcaaac	16	6	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71570496	C	C	71570496	1	2	59	0	1	0	0	0	0	0	0	0	3437	957	33	4		4	CHST4	16	71570496	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	476215	71570496	18784257	1007	66630											
PSMD7	5713	broad.mit.edu	37	chr16	74336183	74336183	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacatttcagtggaagaagTccatgatgtaagtcatcttg	10	6	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74336183	A	A	74336183	3	1	59	1	0	0	0	0	1	0	0	0	12809	1667	58	5	449	5	PSMD7	16	74336183	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2765687	74336183	16018570	1008	66631											
ADAMTS18	170692	broad.mit.edu	37	chr16	77323002	77323002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcaacttccccagagtGgtgccttatacaactccagg	9	13	0	1	rs138499493	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77323002	T	T	77323002	1	4	59	0	1	0	0	0	0	0	0	0	263	1363	47	2		2	ADAMTS18	16	77323002	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2986819	77323002	13031751	1009	66632											
CDH13	1012	broad.mit.edu	37	chr16	83430495	83430495	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatttttaattctcacaatGaccctttcaggtagcttcta	4	10	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83430495	T	T	83430495	1	4	59	0	1	0	0	0	0	0	0	0	3129	1305	45	3		3	CDH13	16	83430495	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6107493	83430495	6924258	1010	66633											
KIAA0513	9764	broad.mit.edu	37	chr16	85100771	85100771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaccaccccctgtgctgCaggacggcgatggctccctg	13	16	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85100771	A	A	85100771	3	1	59	1	0	0	0	0	1	0	0	0	8251	711	25	3	96	3	KIAA0513	16	85100771	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1670276	85100771	5253982	1011	66634											
FAM92B	339145	broad.mit.edu	37	chr16	85135971	85135971	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagaatgtaagcatcgcaGtgagaaagagcccagggaag	13	7	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85135971	A	A	85135971	1	1	59	0	1	0	0	0	0	0	0	0	5710	1044	36	4		4	FAM92B	16	85135971	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	35200	85135971	5218782	1012	66635											
IRF8	3394	broad.mit.edu	37	chr16	85936527	85936527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagccagcacctttgctgCaaacctctgagtttcctgtt	7	14	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85936527	A	A	85936527	1	1	59	0	1	0	0	0	0	0	0	0	7906	725	25	3		3	IRF8	16	85936527	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	800556	85936527	4418226	1013	66636											
CLEC10A	10462	broad.mit.edu	37	chr17	6979878	6979878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacctcgtgatccacccGcctcggcctcccaaactgct	7	20	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6979878	T	T	6979878	1	4	59	0	1	0	0	0	0	0	0	0	3527	1102	38	3		3	CLEC10A	17	6979878	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08		6979878	74215332	1014	66637											
GPS2	2874	broad.mit.edu	37	chr17	7216393	7216393	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggagctggggggaagcaagGagtccaggggctggatgcag	22	6	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7216393	A	A	7216393	2	1	59	1	0	0	0	0	0	0	0	1	6799	1161	41	4		4	GPS2	17	7216393	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	236515	7216393	73978817	1015	66638											
TP53	7157	broad.mit.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0	rs28934576	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577120	A	A	7577120	3	1	59	1	0	0	0	0	1	0	0	0	16505	536	19	3	468	3	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	360727	7577120	73618090	1016	66639											
DNAH2	146754	broad.mit.edu	37	chr17	7636533	7636533	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgcttcggctgctcggTggagtctttgcccctcagat	12	14	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7636533	C	C	7636533	2	2	59	1	0	0	0	0	0	0	0	1	4642	1683	59	5		5	DNAH2	17	7636533	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	59413	7636533	73558677	1017	66640											
CHD3	1107	broad.mit.edu	37	chr17	7794055	7794055	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggagggagatggggggcAaaaggtgagtagaattaggg	23	1	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7794055	C	C	7794055	3	2	59	1	0	0	0	0	1	0	0	0	3357	130	5	5	671	5	CHD3	17	7794055	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	157522	7794055	73401155	1018	66641											
MYH2	4620	broad.mit.edu	37	chr17	10432292	10432292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcttcttccagcctctcGctgatctcctccagctcccg	7	20	3	1	rs142095822		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10432292	T	T	10432292	3	4	59	1	0	0	0	0	1	0	0	0	10129	1078	38	3	2422	3	MYH2	17	10432292	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2638237	10432292	70762918	1019	66642											
DNAH9	1770	broad.mit.edu	37	chr17	11514371	11514371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcttcattattgctcctGctcctgctcctgctcctgct	7	15	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11514371	T	T	11514371	1	4	59	0	1	0	0	0	0	0	0	0	4648	1334	46	3		3	DNAH9	17	11514371	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1082079	11514371	69680839	1020	66643											
HS3ST3A1	9955	broad.mit.edu	37	chr17	13399670	13399671	+	Frame_Shift_Ins	INS	-	T	T													ggggccggctgctgccctccINSgccttcttcaggcaggggaa							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13399671	T	T	13399670	7	5	59	1	0	1	1	0	0	0	0	0	7432	639	23	0	159	0	HS3ST3A1	17	13399670	Frame_Shift_Ins	INS	-	TCGA-17-Z028-01A-01W-0746-08	1885299	13399670	67795540	1021	66644											
ALKBH5	54890	broad.mit.edu	37	chr17	18111563	18111563	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggagatggacaaggaagaGaaccggcgctcggtgctgct	16	9	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18111563	C	C	18111563	3	2	59	1	0	0	0	0	1	0	0	0	530	933	33	4	1052	4	ALKBH5	17	18111563	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4711893	18111563	63083647	1022	66645											
LLGL1	3996	broad.mit.edu	37	chr17	18145077	18145077	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcctcaggcgagcgaactGagtgggaccagtactgcttg	13	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18145077	C	C	18145077	1	2	59	0	1	0	0	0	0	0	0	0	8907	1305	45	4		4	LLGL1	17	18145077	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	33514	18145077	63050133	1023	66646											
LGALS9	3965	broad.mit.edu	37	chr17	25974145	25974145	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgcccagtgctcagagGtaagccaagggctccagtga	13	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25974145	A	A	25974145	5	1	59	1	0	0	0	0	0	0	1	0	8820	1275	44	4	793	4	LGALS9	17	25974145	Splice_Site	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7829068	25974145	55221065	1024	66647											
PIGS	94005	broad.mit.edu	37	chr17	26881093	26881093	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgaacccatcttggagtgTtgtactttggttgctggaga	13	6	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26881093	C	C	26881093	1	2	59	0	1	0	0	0	0	0	0	0	11993	1740	60	5		5	PIGS	17	26881093	3'UTR	SNP	T	TCGA-17-Z028-01A-01W-0746-08	906948	26881093	54314117	1025	66648											
NF1	4763	broad.mit.edu	37	chr17	29657349	29657349	+	Missense_Mutation	SNP	G	T	T													tcttctgtgtgccttaacttGtacctttaatttaaaaatcg							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29657349	T	T	29657349	3	4	59	1	0	0	0	0	1	0	0	0	10451	1377	48	3	5860	3	NF1	17	29657349	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2776256	29657349	51537861	1026	66649	308	2									
NF1	4763	broad.mit.edu	37	chr17	29657351	29657351	+	Missense_Mutation	SNP	A	C	C													ttctgtgtgccttaacttgtAcctttaatttaaaaatcgag							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29657351	C	C	29657351	3	2	59	1	0	0	0	0	1	0	0	0	10451	391	14	5	5862	5	NF1	17	29657351	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2	29657351	51537859	1027	66650	308	2									
UTP6	55813	broad.mit.edu	37	chr17	30195071	30195071	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacagaacacttacttgctcCttttcaaactgaatcatttt	3	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30195071	G	G	30195071	3	3	59	1	0	0	0	0	1	0	0	0	17229	680	24	4	248	4	UTP6	17	30195071	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	537720	30195071	51000139	1028	66651											
UNC45B	146862	broad.mit.edu	37	chr17	33510436	33510436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgagccatgttcctgCctcccacaggtacaggaaag	9	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33510436	A	A	33510436	1	1	59	0	1	0	0	0	0	0	0	0	17115	754	26	3		3	UNC45B	17	33510436	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3315365	33510436	47684774	1029	66652											
UNC45B	146862	broad.mit.edu	37	chr17	33510569	33510569	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggccatgctgacagcagcaCacaagaaactgtgcctcaag	10	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33510569	G	G	33510569	3	3	59	1	0	0	0	0	1	0	0	0	17115	478	17	4	2573	4	UNC45B	17	33510569	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	133	33510569	47684641	1030	66653											
CCL15	6359	broad.mit.edu	37	chr17	34324762	34324762	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaagaaactcacaggagGtgttggaggtgggtggctgg	18	6	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34324762	T	T	34324762	1	4	59	0	1	0	0	0	0	0	0	0	2914	1276	44	3		3	CCL15	17	34324762	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	814193	34324762	46870448	1031	66654											
TBC1D3G	654341	broad.mit.edu	37	chr17	34797757	34797757	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctctacgtccaggtccGttgggaggcggggcatggag	17	12	1	0	rs142949917		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34797757	A	A	34797757	3	1	59	1	0	0	0	0	1	0	0	0	15743	1145	40	4	274	4	TBC1D3G	17	34797757	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	472995	34797757	46397453	1032	66655											
TADA2A	6871	broad.mit.edu	37	chr17	35802677	35802677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccagctacagatgaccCtccccgacctacctttgact	5	17	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35802677	T	T	35802677	3	4	59	1	0	0	0	0	1	0	0	0	15629	681	24	4	477	4	TADA2A	17	35802677	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1004920	35802677	45392533	1033	66656											
CDC6	990	broad.mit.edu	37	chr17	38457307	38457307	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgggatggagcagatggaAcggaggtagagatcagaatc	17	4	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38457307	T	T	38457307	1	4	59	0	1	0	0	0	0	0	0	0	3113	58	2	5		5	CDC6	17	38457307	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2654630	38457307	42737903	1034	66657											
KRT38	8687	broad.mit.edu	37	chr17	39597020	39597020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacacggactcggttggCatgtgccacgttggccaaaa	11	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39597020	T	T	39597020	3	4	59	1	0	0	0	0	1	0	0	0	8546	710	25	4	1244	4	KRT38	17	39597020	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1139713	39597020	41598190	1035	66658											
STAT5B	6777	broad.mit.edu	37	chr17	40354611	40354611	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctccagctacaggagtGgggcctcaggtactggcata	16	10	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40354611	A	A	40354611	1	1	59	0	1	0	0	0	0	0	0	0	15387	1363	47	4		4	STAT5B	17	40354611	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	757591	40354611	40840599	1036	66659											
STAT3	6774	broad.mit.edu	37	chr17	40481632	40481633	+	Frame_Shift_Del	DEL	TG	-	-													tcttccatgttcatcactttTgtgtttgtgcccagaatgtt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40481633	-	-	40481632	7	5	59	1	0	1	0	1	0	0	0	0	15384	1799	63	0	1187	0	STAT3	17	40481632	Frame_Shift_Del	DEL	TG	TCGA-17-Z028-01A-01W-0746-08	127021	40481632	40713578	1037	66660											
MEOX1	4222	broad.mit.edu	37	chr17	41719206	41719206	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctggggaaggaagagggtGaaggtgggattggggtgggg	26	1	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41719206	C	C	41719206	1	2	59	0	1	0	0	0	0	0	0	0	9566	1305	45	4		4	MEOX1	17	41719206	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1237574	41719206	39476004	1038	66661											
ADAM11	4185	broad.mit.edu	37	chr17	42854947	42854947	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagtgtcaccttctaccacCagggcaaggagctggactgc	12	12	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42854947	T	T	42854947	4	4	59	1	0	0	0	0	0	1	0	0	235	595	21	4	1965	4	ADAM11	17	42854947	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1135741	42854947	38340263	1039	66662											
CRHR1	1394	broad.mit.edu	37	chr17	43907957	43907957	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgagctgggcagccacctcCgcagcctgggcagtggcggc	17	14	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43907957	G	G	43907957	1	3	59	0	1	0	0	0	0	0	0	0	3903	667	23	4		4	CRHR1	17	43907957	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1053010	43907957	37287253	1040	66663											
HOXB6	3216	broad.mit.edu	37	chr17	46673520	46673520	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagttctcaccaggaagcctGatcaggctgaggcgagttcc	12	12	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46673520	T	T	46673520	1	4	59	0	1	0	0	0	0	0	0	0	7372	1305	45	3		3	HOXB6	17	46673520	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2765563	46673520	34521690	1041	66664											
ABI3	51225	broad.mit.edu	37	chr17	47295250	47295250	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacccctcaactttggctgCctggacgacattggccatgg	11	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47295250	T	T	47295250	2	4	59	1	0	0	0	0	0	0	0	1	90	747	26	4		4	ABI3	17	47295250	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	621730	47295250	33899960	1042	66665											
MMD	23531	broad.mit.edu	37	chr17	53491505	53491505	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcaatggtggaaaacttgTactcactgcgtgtgtgtaac	12	7	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53491505	A	A	53491505	1	1	59	0	1	0	0	0	0	0	0	0	9736	1653	57	5		5	MMD	17	53491505	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	6196255	53491505	27703705	1043	66666											
EPX	8288	broad.mit.edu	37	chr17	56272420	56272420	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcatgcagtggggccagttCattgaccatgacctggactt	11	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56272420	T	T	56272420	2	4	59	1	0	0	0	0	0	0	0	1	5242	825	29	4		4	EPX	17	56272420	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2780915	56272420	24922790	1044	66667											
EPX	8288	broad.mit.edu	37	chr17	56280504	56280504	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatttggcacagcttagcCgggtgctgaaaaaccaggac	13	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56280504	A	A	56280504	2	1	59	1	0	0	0	0	0	0	0	1	5242	643	23	1		1	EPX	17	56280504	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	8084	56280504	24914706	1045	66668											
BZRAP1	9256	broad.mit.edu	37	chr17	56395576	56395576	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaccccagaagaggtcagGgccacctgccctgcaccctt	12	16	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56395576	A	A	56395576	1	1	59	0	1	0	0	0	0	0	0	0	1587	1247	43	4		4	BZRAP1	17	56395576	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	115072	56395576	24799634	1046	66669											
MED13	9969	broad.mit.edu	37	chr17	60040135	60040135	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacagaaacagtactcttgAtatgaggaggaagagtctgg	13	5	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60040135	G	G	60040135	3	3	59	1	0	0	0	0	1	0	0	0	9523	333	12	5	1522	5	MED13	17	60040135	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	3644559	60040135	21155075	1047	66670											
MRC2	9902	broad.mit.edu	37	chr17	60742177	60742177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgtacactgggtgaccaGctgtccttgctcctgggggc	14	12	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60742177	T	T	60742177	3	4	59	1	0	0	0	0	1	0	0	0	9852	962	34	3	393	3	MRC2	17	60742177	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	702042	60742177	20453033	1048	66671											
TANC2	26115	broad.mit.edu	37	chr17	61369685	61369685	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaggaggagaagacaagaAaagaactggaagaaagtgtc	13	4	1	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61369685	G	G	61369685	1	3	59	0	1	0	0	0	0	0	0	0	15664	29	1	5		5	TANC2	17	61369685	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	627508	61369685	19825525	1049	66672											
KCNH6	81033	broad.mit.edu	37	chr17	61615561	61615561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatccccaacccactgcGccagcgcctggaggagtatt	10	16	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61615561	T	T	61615561	3	4	59	1	0	0	0	0	1	0	0	0	8106	1087	38	3	1663	3	KCNH6	17	61615561	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	245876	61615561	19579649	1050	66673											
CSH2	1443	broad.mit.edu	37	chr17	61950767	61950767	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcgctctccctgctccagGagctgtttgtttttttctct	8	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61950767	T	T	61950767	1	4	59	0	1	0	0	0	0	0	0	0	3975	1189	41	3		3	CSH2	17	61950767	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	335206	61950767	19244443	1051	66674											
GH2	2689	broad.mit.edu	37	chr17	61958133	61958133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctggtgccaccctcaccCacatcagcgtttggatgcct	8	17	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61958133	A	A	61958133	3	1	59	1	0	0	0	0	1	0	0	0	6432	608	21	2	543	2	GH2	17	61958133	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7366	61958133	19237077	1052	66675											
GH2	2689	broad.mit.edu	37	chr17	61958529	61958529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggagaaggaccgcccacCaaggtctatgctggagacca	12	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61958529	A	A	61958529	1	1	59	0	1	0	0	0	0	0	0	0	6432	609	21	2		2	GH2	17	61958529	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	396	61958529	19236681	1053	66676											
PRKAR1A	5573	broad.mit.edu	37	chr17	66518895	66518896	+	Splice_Site	DNP	AG	TT	TT													gcaaactcgtaatttctttcAggaggaggcaaaacagattc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	66518896	TT	TT	66518895	5	4	59	1	0	0	0	0	0	0	1	0	12609	202	7	5	182	5	PRKAR1A	17	66518895	Splice_Site	DNP	AG	TCGA-17-Z028-01A-01W-0746-08	4560366	66518895	14676315	1054	66677											
ABCA5	23461	broad.mit.edu	37	chr17	67290751	67290751	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgcaaattatttttctagTtgtactttaaatactatggc	5	5	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67290751	C	C	67290751	1	2	59	0	1	0	0	0	0	0	0	0	35	1740	60	5		5	ABCA5	17	67290751	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	771856	67290751	13904459	1055	66678											
C17orf95	124512	broad.mit.edu	37	chr17	74729619	74729619	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagtgctgactggtcacttGaagctttactctacaaatgg	9	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74729619	T	T	74729619	4	4	59	1	0	0	0	0	0	1	0	0	1909	1291	45	3	438	3	C17orf95	17	74729619	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7438868	74729619	6465591	1056	66679											
SEC14L1	6397	broad.mit.edu	37	chr17	75212642	75212642	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctcagatggcgattttGctgacagctgccaagaaaat	11	8	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75212642	T	T	75212642	1	4	59	0	1	0	0	0	0	0	0	0	14094	1319	46	3		3	SEC14L1	17	75212642	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	483023	75212642	5982568	1057	66680											
EIF4A3	9775	broad.mit.edu	37	chr17	78109999	78109999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagtaaatgtgtcacagaaGtgaagccaatgagagcttgc	11	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78109999	A	A	78109999	1	1	59	0	1	0	0	0	0	0	0	0	5068	1044	36	4		4	EIF4A3	17	78109999	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2897357	78109999	3085211	1058	66681											
ACTG1	71	broad.mit.edu	37	chr17	79478070	79478070	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggcgtacaggtctttgcgGatgtccacgtcacacttcat	10	11	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79478070	T	T	79478070	2	4	59	1	0	0	0	0	0	0	0	1	196	1164	41	3		3	ACTG1	17	79478070	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1368071	79478070	1717140	1059	66682											
LAMA1	284217	broad.mit.edu	37	chr18	7016521	7016521	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcctggtaggcgtagaaGccatgggcacacctgtcaca	11	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7016521	A	A	7016521	2	1	59	1	0	0	0	0	0	0	0	1	8677	958	34	4		4	LAMA1	18	7016521	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08		7016521	71060727	1060	66683											
TXNDC2	84203	broad.mit.edu	37	chr18	9887622	9887622	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtctccaaaacaagccatCcagcccaaggagggtgacat	9	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9887622	A	A	9887622	2	1	59	1	0	0	0	0	0	0	0	1	16923	845	30	3		3	TXNDC2	18	9887622	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2871101	9887622	68189626	1061	66684											
AFG3L2	10939	broad.mit.edu	37	chr18	12367253	12367253	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accatcataacctcaaaattCacacaatgtatagcatcaaa	2	11	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12367253	T	T	12367253	1	4	59	0	1	0	0	0	0	0	0	0	360	841	29	4		4	AFG3L2	18	12367253	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2479631	12367253	65709995	1062	66685											
CEP192	55125	broad.mit.edu	37	chr18	13096059	13096059	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattggaaatttctgtaattGagcagttgagaaagcagtag	12	3	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13096059	C	C	13096059	1	2	59	0	1	0	0	0	0	0	0	0	3281	1305	45	4		4	CEP192	18	13096059	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	728806	13096059	64981189	1063	66686											
ZNF519	162655	broad.mit.edu	37	chr18	14105633	14105633	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaaggtgtgaactcttGttaaaggctttgtcacattt	10	6	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14105633	C	C	14105633	3	2	59	1	0	0	0	0	1	0	0	0	18091	1368	48	4	720	4	ZNF519	18	14105633	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1009574	14105633	63971615	1064	66687											
CDH2	1000	broad.mit.edu	37	chr18	25616459	25616459	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaacatacaattctgcTtggttctttaatttctcagt	6	7	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25616459	A	A	25616459	1	1	59	0	1	0	0	0	0	0	0	0	3135	1624	56	5		5	CDH2	18	25616459	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	11510826	25616459	52460789	1065	66688											
DSG4	147409	broad.mit.edu	37	chr18	28956809	28956809	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgtagagcagaattcGgaactgagaagacgagggct	13	7	1	4	rs142563540	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28956809	A	A	28956809	1	1	59	0	1	0	0	0	0	0	0	0	4819	1131	39	4		4	DSG4	18	28956809	5'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3340350	28956809	49120439	1066	66689											
C18orf34	374864	broad.mit.edu	37	chr18	30873051	30873051	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaattgctatttaattatTgacaaaaaagtttactattt	4	5	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30873051	A	A	30873051	1	1	59	0	1	0	0	0	0	0	0	0	1920	1827	63	5		5	C18orf34	18	30873051	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1916242	30873051	47204197	1067	66690											
FHOD3	80206	broad.mit.edu	37	chr18	34205813	34205813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctggccactttgtccCccacccagcattgctcccta	6	20	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34205813	A	A	34205813	1	1	59	0	1	0	0	0	0	0	0	0	5940	638	22	2		2	FHOD3	18	34205813	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3332762	34205813	43871435	1068	66691											
SLC14A2	8170	broad.mit.edu	37	chr18	42897148	42897148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagtgggaagatgaagCactgtaagatacacatcccc	11	10	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42897148	A	A	42897148	1	1	59	0	1	0	0	0	0	0	0	0	14510	725	25	3		3	SLC14A2	18	42897148	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	8691335	42897148	35180100	1069	66692											
TCEB3B	51224	broad.mit.edu	37	chr18	44561157	44561157	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccggaatcagctggggctAttctggggcactttctctca	13	11	4	0	rs151287064	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44561157	G	G	44561157	3	3	59	1	0	0	0	0	1	0	0	0	15804	449	16	5	1786	5	TCEB3B	18	44561157	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1664009	44561157	33516091	1070	66693											
MAPK4	5596	broad.mit.edu	37	chr18	48190905	48190905	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaatggcggatactggtGgtccacagaatccccaagaa	12	10	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48190905	T	T	48190905	1	4	59	0	1	0	0	0	0	0	0	0	9372	1363	47	2		2	MAPK4	18	48190905	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3629748	48190905	29886343	1071	66694											
WDR7	23335	broad.mit.edu	37	chr18	54694328	54694328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgccccctgtgcagcccGcgtcccccggctcccacaat	10	20	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54694328	T	T	54694328	3	4	59	1	0	0	0	0	1	0	0	0	17447	1087	38	3	4469	3	WDR7	18	54694328	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6503423	54694328	23382920	1072	66695											
SERPINB13	5275	broad.mit.edu	37	chr18	61256061	61256061	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagccaccgcttcccagttgGaggaggttgggcgcagtcag	16	11	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61256061	T	T	61256061	4	4	59	1	0	0	0	0	0	1	0	0	14213	1175	41	3	162	3	SERPINB13	18	61256061	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6561733	61256061	16821187	1073	66696											
SERPINB11	89778	broad.mit.edu	37	chr18	61377383	61377383	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgtaacttcaagtgatgTtctgagaattttttcccttc	6	8	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61377383	A	A	61377383	1	1	59	0	1	0	0	0	0	0	0	0	14211	1740	60	5		5	SERPINB11	18	61377383	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	121322	61377383	16699865	1074	66697											
SERPINB7	8710	broad.mit.edu	37	chr18	61468323	61468323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgagttttcactgataaaCtgtaagatttcagggtattg	9	4	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61468323	A	A	61468323	1	1	59	0	1	0	0	0	0	0	0	0	14219	580	20	3		3	SERPINB7	18	61468323	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	90940	61468323	16608925	1075	66698											
CDH7	1005	broad.mit.edu	37	chr18	63477063	63477063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgccaccaagagactggatCgtgaggagcaggcctactac	12	11	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63477063	A	A	63477063	3	1	59	1	0	0	0	0	1	0	0	0	3145	884	31	3	340	3	CDH7	18	63477063	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2008740	63477063	14600185	1076	66699											
DOK6	220164	broad.mit.edu	37	chr18	67365913	67365913	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaaagagagtgctgtcCatcattgcccccagtgagca	10	12	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67365913	T	T	67365913	1	4	59	0	1	0	0	0	0	0	0	0	4741	609	21	4		4	DOK6	18	67365913	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3888850	67365913	10711335	1077	66700											
NETO1	81832	broad.mit.edu	37	chr18	70417870	70417870	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttctctataggttggagaGagtgaaaacaacaaacggac	10	7	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70417870	T	T	70417870	1	4	59	0	1	0	0	0	0	0	0	0	10434	957	33	3		3	NETO1	18	70417870	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3051957	70417870	7659378	1078	66701											
GIPC3	126326	broad.mit.edu	37	chr19	3589996	3589996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgggaagttgggcgcgGggagtgccctcactgacatc	16	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3589996	T	T	3589996	1	4	59	0	1	0	0	0	0	0	0	0	6458	1247	43	2		2	GIPC3	19	3589996	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08		3589996	55538987	1079	66702											
EMR1	2015	broad.mit.edu	37	chr19	6921744	6921744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagcagaagtttgagagGcccatctgtgtttcctggag	12	9	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6921744	T	T	6921744	3	4	59	1	0	0	0	0	1	0	0	0	5146	1194	42	3	1695	3	EMR1	19	6921744	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3331748	6921744	52207239	1080	66703											
MUC16	94025	broad.mit.edu	37	chr19	9016505	9016505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccttgctatatccctagGgtctggtacactgtaggtgg	11	9	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9016505	T	T	9016505	1	4	59	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	9016505	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2094761	9016505	50112478	1081	66704											
COL5A3	50509	broad.mit.edu	37	chr19	10103898	10103898	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggattccattcaggcccctGactccaatcctagacctgca	8	15	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10103898	T	T	10103898	1	4	59	0	1	0	0	0	0	0	0	0	3730	1305	45	3		3	COL5A3	19	10103898	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1087393	10103898	49025085	1082	66705											
MAST1	22983	broad.mit.edu	37	chr19	12958233	12958233	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatggtggccgtcgctccCcagccgtgcggccccgctca	14	17	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12958233	T	T	12958233	3	4	59	1	0	0	0	0	1	0	0	0	9416	623	22	4	475	4	MAST1	19	12958233	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2854335	12958233	46170750	1083	66706											
DNASE2	1777	broad.mit.edu	37	chr19	12989465	12989465	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacccaggactcatcctgTgtccctgactcgacttaccc	6	16	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12989465	C	C	12989465	1	2	59	0	1	0	0	0	0	0	0	0	4704	1711	59	5		5	DNASE2	19	12989465	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	31232	12989465	46139518	1084	66707											
NFIX	4784	broad.mit.edu	37	chr19	13201202	13201202	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaacatcccacagcagtctCaggtaggagaccctgcccac	9	15	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13201202	G	G	13201202	3	3	59	1	0	0	0	0	1	0	0	0	10469	841	29	4		4	NFIX	19	13201202	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	211737	13201202	45927781	1085	66708											
MRI1	84245	broad.mit.edu	37	chr19	13875414	13875414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcaccatgaccctggaGgcgatccgctactcgcgggg	14	14	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13875414	T	T	13875414	3	4	59	1	0	0	0	0	1	0	0	0	9864	991	35	2	14	2	MRI1	19	13875414	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	674212	13875414	45253569	1086	66709											
AKAP8	10270	broad.mit.edu	37	chr19	15484839	15484839	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgcgcctgtggtgacactGgtgttctgggcgccatagta	15	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15484839	C	C	15484839	2	2	59	1	0	0	0	0	0	0	0	1	457	1335	47	4		4	AKAP8	19	15484839	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1609425	15484839	43644144	1087	66710											
CALR3	125972	broad.mit.edu	37	chr19	16601253	16601253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaagaccttaatgtagcCccctccacagtccatcttct	6	14	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16601253	A	A	16601253	3	1	59	1	0	0	0	0	1	0	0	0	2619	623	22	2	860	2	CALR3	19	16601253	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1116414	16601253	42527730	1088	66711											
ZNF430	80264	broad.mit.edu	37	chr19	21217086	21217086	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgagaatctgtgttccaaAgcaaatattttctgggaagc	9	6	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21217086	G	G	21217086	1	3	59	0	1	0	0	0	0	0	0	0	18031	87	3	5		5	ZNF430	19	21217086	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	4615833	21217086	37911897	1089	66712											
ZNF99	7652	broad.mit.edu	37	chr19	22941185	22941185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacattcttcacatttgCaaggtttctcttccatatga	5	11	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22941185	A	A	22941185	3	1	59	1	0	0	0	0	1	0	0	0	18333	710	25	3	1871	3	ZNF99	19	22941185	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1724099	22941185	36187798	1090	66713											
ZNF536	9745	broad.mit.edu	37	chr19	30935733	30935733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcggcatgtcccaggagGcccacgccaacctgtactcc	12	16	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935733	T	T	30935733	3	4	59	1	0	0	0	0	1	0	0	0	18101	1203	42	3	1266	3	ZNF536	19	30935733	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	7994548	30935733	28193250	1091	66714											
RHPN2	85415	broad.mit.edu	37	chr19	33493811	33493811	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacacgctttcttgggcttGtgcaagcatcattttgacga	9	9	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33493811	A	A	33493811	4	1	59	1	0	0	0	0	0	1	0	0	13460	1386	48	4	1236	4	RHPN2	19	33493811	Nonsense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2558078	33493811	25635172	1092	66715											
FFAR1	2864	broad.mit.edu	37	chr19	35842790	35842790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagcagccttccccttGggctaccaagccttccggag	12	15	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35842790	T	T	35842790	3	4	59	1	0	0	0	0	1	0	0	0	5884	1339	47	2	338	2	FFAR1	19	35842790	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2348979	35842790	23286193	1093	66716											
DMKN	93099	broad.mit.edu	37	chr19	35989562	35989562	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcctggccctgccccggGtgactgtgcctccactgcca	11	17	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35989562	A	A	35989562	1	1	59	0	1	0	0	0	0	0	0	0	4622	1276	44	4		4	DMKN	19	35989562	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	146772	35989562	23139421	1094	66717											
HAUS5	23354	broad.mit.edu	37	chr19	36109850	36109850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggagctcaaggccctgcacGatcagagccaggagctgcag	14	13	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36109850	T	T	36109850	3	4	59	1	0	0	0	0	1	0	0	0	7035	1058	37	3	1128	3	HAUS5	19	36109850	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	120288	36109850	23019133	1095	66718											
PSENEN	55851	broad.mit.edu	37	chr19	36237643	36237643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgggcttcctcttctgGgtgatagtgctcacctcctg	12	12	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36237643	T	T	36237643	3	4	59	1	0	0	0	0	1	0	0	0	12758	1241	43	2	211	2	PSENEN	19	36237643	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	127793	36237643	22891340	1096	66719											
NPHS1	4868	broad.mit.edu	37	chr19	36342405	36342405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacctcgggaagcctgggatCctggggtcggggcccaggag	18	11	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36342405	A	A	36342405	3	1	59	1	0	0	0	0	1	0	0	0	10677	854	30	3	3609	3	NPHS1	19	36342405	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	104762	36342405	22786578	1097	66720											
NFKBID	84807	broad.mit.edu	37	chr19	36387021	36387021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggatggccgtgtggagcGgggtgaggcctgcagaatgg	20	8	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36387021	T	T	36387021	3	4	59	1	0	0	0	0	1	0	0	0	10474	1116	39	1	490	1	NFKBID	19	36387021	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	44616	36387021	22741962	1098	66721											
ZNF461	92283	broad.mit.edu	37	chr19	37149259	37149259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtacaaattcctctgCgctgggttcaggcattccca	8	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37149259	A	A	37149259	2	1	59	1	0	0	0	0	0	0	0	1	18052	755	27	3		3	ZNF461	19	37149259	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	762238	37149259	21979724	1099	66722											
ZNF568	374900	broad.mit.edu	37	chr19	37428163	37428163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaataagtgaaaagcaGctctgaatgagaaagccaca	11	6	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37428163	T	T	37428163	1	4	59	0	1	0	0	0	0	0	0	0	18126	986	34	3		3	ZNF568	19	37428163	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	278904	37428163	21700820	1100	66723											
ZNF607	84775	broad.mit.edu	37	chr19	38189751	38189751	+	Frame_Shift_Del	DEL	C	-	-													gcacgctgactgaaggccttCccacattccttacatttgta							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38189751	-	-	38189751	7	5	59	1	0	1	0	1	0	0	0	0	18160	842	30	0	813	0	ZNF607	19	38189751	Frame_Shift_Del	DEL	C	TCGA-17-Z028-01A-01W-0746-08	761588	38189751	20939232	1101	66724											
IL29	282618	broad.mit.edu	37	chr19	39788990	39788990	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggagccaataggagcccaGaccctggacagcccctgacc	13	15	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39788990	C	C	39788990	1	2	59	0	1	0	0	0	0	0	0	0	7755	957	33	4		4	IL29	19	39788990	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1599239	39788990	19339993	1102	66725											
C19orf47	126526	broad.mit.edu	37	chr19	40829854	40829854	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgttaaagagtcaggagCaccgctcagggaagacaaca	12	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40829854	T	T	40829854	1	4	59	0	1	0	0	0	0	0	0	0	1949	725	25	4		4	C19orf47	19	40829854	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1040864	40829854	18299129	1103	66726											
CYP2A7	1549	broad.mit.edu	37	chr19	41395229	41395229	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatctggaggtggaatggtgAagggagctgttctaagagta	16	3	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41395229	T	T	41395229	1	4	59	0	1	0	0	0	0	0	0	0	4196	261	9	5		5	CYP2A7	19	41395229	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	565375	41395229	17733754	1104	66727											
CYP2A7	1549	broad.mit.edu	37	chr19	41518745	41518745	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggacccacaatttctttCccagacaccagagggcaggt	10	13	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41518745	A	A	41518745	1	1	59	0	1	0	0	0	0	0	0	0	4196	870	30	3		3	CYP2A7	19	41518745	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	123516	41518745	17610238	1105	66728											
PSG5	5673	broad.mit.edu	37	chr19	43679348	43679348	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctaaaaccctattgccaagGatgctgggatccacttacca	7	13	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43679348	A	A	43679348	1	1	59	0	1	0	0	0	0	0	0	0	12764	1189	41	4		4	PSG5	19	43679348	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2160603	43679348	15449635	1106	66729											
TEX101	83639	broad.mit.edu	37	chr19	43920716	43920716	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagaccacaggtaccctgGaagtgggggagataggtact	16	7	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43920716	T	T	43920716	1	4	59	0	1	0	0	0	0	0	0	0	15895	1189	41	3		3	TEX101	19	43920716	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	241368	43920716	15208267	1107	66730											
ZNF284	342909	broad.mit.edu	37	chr19	44590210	44590210	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctcagctctttgtcttcaTcagaaagttcacatgggaga	9	9	6	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44590210	A	A	44590210	3	1	59	1	0	0	0	0	1	0	0	0	17947	1432	50	5	593	5	ZNF284	19	44590210	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	669494	44590210	14538773	1108	66731											
ZNF226	7769	broad.mit.edu	37	chr19	44676161	44676161	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacggctgggcatccagaacAactttccacctgttctcagt	8	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44676161	T	T	44676161	1	4	59	0	1	0	0	0	0	0	0	0	17906	145	5	5		5	ZNF226	19	44676161	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	85951	44676161	14452822	1109	66732											
CEACAM20	125931	broad.mit.edu	37	chr19	45033480	45033480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggaagcagggcactcaCctgaaagcaggattcccatc	11	11	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45033480	T	T	45033480	1	4	59	0	1	0	0	0	0	0	0	0	3221	521	18	4		4	CEACAM20	19	45033480	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	357319	45033480	14095503	1110	66733											
KLK1	3816	broad.mit.edu	37	chr19	51322429	51322429	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatttgattttactggggGtaggggacagggctgggcgt	17	6	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51322429	T	T	51322429	1	4	59	0	1	0	0	0	0	0	0	0	8468	1276	44	3		3	KLK1	19	51322429	3'UTR	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6288949	51322429	7806554	1111	66734											
KLK12	43849	broad.mit.edu	37	chr19	51533926	51533926	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcccttcctttttgacccCgtctctctgcagcatcccct	4	19	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51533926	G	G	51533926	1	3	59	0	1	0	0	0	0	0	0	0	8471	667	23	4		4	KLK12	19	51533926	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	211497	51533926	7595057	1112	66735											
SIGLEC8	27181	broad.mit.edu	37	chr19	51958819	51958819	+	Frame_Shift_Del	DEL	G	-	-													tgaggaccgtgaggggcacaGggtcaggctcccccgggtcc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51958819	-	-	51958819	7	5	59	1	0	1	0	1	0	0	0	0	14427	991	35	0	611	0	SIGLEC8	19	51958819	Frame_Shift_Del	DEL	G	TCGA-17-Z028-01A-01W-0746-08	424893	51958819	7170164	1113	66736											
ZNF577	84765	broad.mit.edu	37	chr19	52381733	52381733	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactgccactcctccctggtGaagcccacagccacatcttc	6	18	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52381733	A	A	52381733	2	1	59	1	0	0	0	0	0	0	0	1	18136	1281	45	4		4	ZNF577	19	52381733	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	422914	52381733	6747250	1114	66737											
BIRC8	112401	broad.mit.edu	37	chr19	53793757	53793758	+	5'UTR	DNP	TG	CT	CT													ggaaaatgtctcctgtgttcTgaccaggcacgatcaccagg							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	53793758	CT	CT	53793757	1	2	59	0	1	0	0	0	0	0	0	0	1446	1595	55	5		5	BIRC8	19	53793757	5'UTR	DNP	TG	TCGA-17-Z028-01A-01W-0746-08	1412024	53793757	5335226	1115	66738											
PRKCG	5582	broad.mit.edu	37	chr19	54403989	54403989	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttctgcgggaccccggacTacatagccccggaggtaacc	11	16	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54403989	A	A	54403989	3	1	59	1	0	0	0	0	1	0	0	0	12618	1522	53	5	1615	5	PRKCG	19	54403989	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	610232	54403989	4724994	1116	66739											
VSTM1	284415	broad.mit.edu	37	chr19	54561570	54561570	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttctcacctgtgaccacCagctgcaagtgttcactgct	7	16	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54561570	G	G	54561570	2	3	59	1	0	0	0	0	0	0	0	1	17355	581	21	4		4	VSTM1	19	54561570	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	157581	54561570	4567413	1117	66740											
TMC4	147798	broad.mit.edu	37	chr19	54664217	54664217	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctcaccgtctgtctctgaCgtttgagctcagagatgagg	13	10	4	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54664217	G	G	54664217	3	3	59	1	0	0	0	0	1	0	0	0	16110	536	19	4	89	4	TMC4	19	54664217	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	102647	54664217	4464766	1118	66741											
NCR1	9437	broad.mit.edu	37	chr19	55421559	55421559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatcccagcactttgggaGgccgagatggtgcatcattt	12	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55421559	T	T	55421559	1	4	59	0	1	0	0	0	0	0	0	0	10332	1015	35	2		2	NCR1	19	55421559	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	757342	55421559	3707424	1119	66742											
NLRP5	126206	broad.mit.edu	37	chr19	56543981	56543981	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccccctgacataggatgCgggataagaccctcattgag	10	12	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56543981	A	A	56543981	2	1	59	1	0	0	0	0	0	0	0	1	10575	759	27	3		3	NLRP5	19	56543981	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1122422	56543981	2585002	1120	66743											
ZNF582	147948	broad.mit.edu	37	chr19	56901331	56901331	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttccagcggacctgatacCtgcagtggctgctcccttcc	9	16	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56901331	G	G	56901331	1	3	59	0	1	0	0	0	0	0	0	0	18141	696	24	4		4	ZNF582	19	56901331	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	357350	56901331	2227652	1121	66744											
ZIM2	23619	broad.mit.edu	37	chr19	57286984	57286984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctataggcaggctttgccCtggagttagtgctttggttt	12	7	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57286984	A	A	57286984	1	1	59	0	1	0	0	0	0	0	0	0	17810	696	24	2		2	ZIM2	19	57286984	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	385653	57286984	1841999	1122	66745											
ZIM3	114026	broad.mit.edu	37	chr19	57650108	57650108	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaataaattgtgcccagagGatcttgccaatgagccataa	8	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57650108	T	T	57650108	1	4	59	0	1	0	0	0	0	0	0	0	17811	1189	41	3		3	ZIM3	19	57650108	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	363124	57650108	1478875	1123	66746											
SMOX	54498	broad.mit.edu	37	chr20	4163480	4163480	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagatctgcacggagatgCtgcgtcagttcacaggtgcg	14	11	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4163480	T	T	4163480	2	4	59	1	0	0	0	0	0	0	0	1	14917	796	28	4		4	SMOX	20	4163480	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08		4163480	58862040	1124	66747											
TRMT6	51605	broad.mit.edu	37	chr20	5922538	5922538	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggagaaagagaatgccaatCtgtctgaagcagagcccaca	11	9	2	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5922538	T	T	5922538	1	4	59	0	1	0	0	0	0	0	0	0	16693	928	32	4		4	TRMT6	20	5922538	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1759058	5922538	57102982	1125	66748											
PLCB4	5332	broad.mit.edu	37	chr20	9453573	9453573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttagccaccagatctctaGctaatttgtttaatttgatt	6	8	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9453573	T	T	9453573	1	4	59	0	1	0	0	0	0	0	0	0	12125	986	34	3		3	PLCB4	20	9453573	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3531035	9453573	53571947	1126	66749											
PLCB4	5332	broad.mit.edu	37	chr20	9457271	9457271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttttctgtatatggttttGcattcatttttcaaattcac	5	7	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9457271	T	T	9457271	1	4	59	0	1	0	0	0	0	0	0	0	12125	1334	46	3		3	PLCB4	20	9457271	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3698	9457271	53568249	1127	66750											
TASP1	55617	broad.mit.edu	37	chr20	13374174	13374174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagattgtctcctccaaCagtgatacccactcttccat	4	16	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13374174	A	A	13374174	1	1	59	0	1	0	0	0	0	0	0	0	15708	493	17	3		3	TASP1	20	13374174	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3916903	13374174	49651346	1128	66751											
SEL1L2	80343	broad.mit.edu	37	chr20	13856806	13856806	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagaaaaaacaaaataatttGagagtaatgcaaatatttta	5	2	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13856806	C	C	13856806	1	2	59	0	1	0	0	0	0	0	0	0	14124	1305	45	4		4	SEL1L2	20	13856806	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	482632	13856806	49168714	1129	66752											
PCSK2	5126	broad.mit.edu	37	chr20	17290559	17290559	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagaagaagaagaaagGgaaggggaaggggaaggggg	23	0	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17290559	C	C	17290559	1	2	59	0	1	0	0	0	0	0	0	0	11695	1247	43	4		4	PCSK2	20	17290559	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3433753	17290559	45734961	1130	66753											
SLC24A3	57419	broad.mit.edu	37	chr20	19398754	19398754	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacattttagctcctcactCaaatatgaaaaaacaacaag	3	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19398754	A	A	19398754	1	1	59	0	1	0	0	0	0	0	0	0	14581	841	29	3		3	SLC24A3	20	19398754	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2108195	19398754	43626766	1131	66754											
CD93	22918	broad.mit.edu	37	chr20	23065248	23065248	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcttgagtggggcagatgTgatgggggcgtcagatgaca	17	6	2	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23065248	C	C	23065248	3	2	59	1	0	0	0	0	1	0	0	0	3077	1696	59	5	384	5	CD93	20	23065248	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	3666494	23065248	39960272	1132	66755											
DUSP15	128853	broad.mit.edu	37	chr20	30451843	30451843	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagacctctcaggagttgttCcgcccccaccccaattacag	7	17	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30451843	T	T	30451843	1	4	59	0	1	0	0	0	0	0	0	0	4855	870	30	4		4	DUSP15	20	30451843	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	7386595	30451843	32573677	1133	66756											
TM9SF4	9777	broad.mit.edu	37	chr20	30738501	30738501	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctgcttcctcttcatgttCatggggtaggtgtgtctgag	13	9	4	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30738501	G	G	30738501	3	3	59	1	0	0	0	0	1	0	0	0	16103	825	29	4	1206	4	TM9SF4	20	30738501	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	286658	30738501	32287019	1134	66757											
BPIL3	128859	broad.mit.edu	37	chr20	31627967	31627967	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtcttggcaatggtggTagtgctgggagggtggtggt	19	4	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31627967	A	A	31627967	1	1	59	0	1	0	0	0	0	0	0	0	1502	1653	57	5		5	BPIL3	20	31627967	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	889466	31627967	31397553	1135	66758											
KIAA0406	9675	broad.mit.edu	37	chr20	36640451	36640451	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgatggcttggaggcctgGgtgctccatcatcagctcct	13	12	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36640451	A	A	36640451	3	1	59	1	0	0	0	0	1	0	0	0	8243	1232	43	4	1529	4	KIAA0406	20	36640451	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5012484	36640451	26385069	1136	66759											
PTPRT	11122	broad.mit.edu	37	chr20	40730641	40730641	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggtccttgggactagTagatcagaagcagggggggc	16	7	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40730641	C	C	40730641	1	2	59	0	1	0	0	0	0	0	0	0	12920	1653	57	5		5	PTPRT	20	40730641	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	4090190	40730641	22294879	1137	66760											
PTPRT	11122	broad.mit.edu	37	chr20	41180290	41180290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctaagttcaaattatgCattggcaatttctagcttgt	6	7	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41180290	A	A	41180290	1	1	59	0	1	0	0	0	0	0	0	0	12920	725	25	3		3	PTPRT	20	41180290	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	449649	41180290	21845230	1138	66761											
MYBL2	4605	broad.mit.edu	37	chr20	42311268	42311268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaaccgcccatgttccGgcatgtgggcttgcagtgag	15	10	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42311268	T	T	42311268	1	4	59	0	1	0	0	0	0	0	0	0	10104	1131	39	1		1	MYBL2	20	42311268	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1130978	42311268	20714252	1139	66762											
HNF4A	3172	broad.mit.edu	37	chr20	43057040	43057040	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgatgcaggaacatatgGgaaccaacgtcatcgttgcc	10	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43057040	A	A	43057040	3	1	59	1	0	0	0	0	1	0	0	0	7320	1233	43	4	1407	4	HNF4A	20	43057040	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	745772	43057040	19968480	1140	66763											
WFDC9	259240	broad.mit.edu	37	chr20	44237256	44237256	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatagtcggtaaggaccagtGatgaagcatgcccaggccct	12	10	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44237256	T	T	44237256	1	4	59	0	1	0	0	0	0	0	0	0	17484	1305	45	3		3	WFDC9	20	44237256	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1180216	44237256	18788264	1141	66764											
SPINT4	391253	broad.mit.edu	37	chr20	44352467	44352467	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcccataaagacaagttctCctgctgagtccttaccaatt	7	12	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44352467	A	A	44352467	1	1	59	0	1	0	0	0	0	0	0	0	15188	870	30	3		3	SPINT4	20	44352467	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	115211	44352467	18673053	1142	66765											
EYA2	2139	broad.mit.edu	37	chr20	45717915	45717915	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatggaccttccacaccagcGaaagagggagacacagacag	11	11	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45717915	A	A	45717915	2	1	59	1	0	0	0	0	0	0	0	1	5372	1045	37	4		4	EYA2	20	45717915	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	1365448	45717915	17307605	1143	66766											
PREX1	57580	broad.mit.edu	37	chr20	47248785	47248785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtggaggtttcctgactcCtgcccccaacggggacccca	11	16	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47248785	A	A	47248785	1	1	59	0	1	0	0	0	0	0	0	0	12582	696	24	2		2	PREX1	20	47248785	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1530870	47248785	15776735	1144	66767											
PREX1	57580	broad.mit.edu	37	chr20	47412650	47412650	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctacaagaagaatgcattTgtatttgtcatgttatgaaa	7	4	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47412650	A	A	47412650	1	1	59	0	1	0	0	0	0	0	0	0	12582	1827	63	5		5	PREX1	20	47412650	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	163865	47412650	15612870	1145	66768											
ARFGEF2	10564	broad.mit.edu	37	chr20	47634062	47634062	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggagacctgtaggaatggAggaagattcatcagaaaagc	13	5	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47634062	T	T	47634062	3	4	59	1	0	0	0	0	1	0	0	0	855	304	11	5	4614	5	ARFGEF2	20	47634062	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	221412	47634062	15391458	1146	66769											
ATP9A	10079	broad.mit.edu	37	chr20	50224125	50224125	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaggacaacggccgtcccTgaatgagagacagagaaagg	14	8	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50224125	A	A	50224125	5	1	59	1	0	0	0	0	0	0	1	0	1202	1594	55	5	411	5	ATP9A	20	50224125	Splice_Site	SNP	T	TCGA-17-Z028-01A-01W-0746-08	2590063	50224125	12801395	1147	66770											
SALL4	57167	broad.mit.edu	37	chr20	50401195	50401195	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacggcgggctgagttaTtgttcgccccgtgtgtcatg	13	11	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50401195	C	C	50401195	3	2	59	1	0	0	0	0	1	0	0	0	13924	1493	52	5	394	5	SALL4	20	50401195	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	177070	50401195	12624325	1148	66771											
TSHZ2	128553	broad.mit.edu	37	chr20	51869993	51869993	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaaattggaatggaatAtggagcctgttactgtcgtt	13	4	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51869993	T	T	51869993	1	4	59	0	1	0	0	0	0	0	0	0	16749	464	16	5		5	TSHZ2	20	51869993	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1468798	51869993	11155527	1149	66772											
TSHZ2	128553	broad.mit.edu	37	chr20	51870769	51870769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccacgagctattcaaagCccaggaaaagggctttccag	10	12	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51870769	A	A	51870769	3	1	59	1	0	0	0	0	1	0	0	0	16749	739	26	3	778	3	TSHZ2	20	51870769	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	776	51870769	11154751	1150	66773											
CYP24A1	1591	broad.mit.edu	37	chr20	52774206	52774206	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgacacaagttgtcacctTacaaatcaaaagccaaatcc	4	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52774206	A	A	52774206	1	1	59	0	1	0	0	0	0	0	0	0	4187	1769	61	5		5	CYP24A1	20	52774206	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	903437	52774206	10251314	1151	66774											
PHACTR3	116154	broad.mit.edu	37	chr20	58248679	58248679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgggatggtgaccctGgggaccctgctatcctgtgg	16	11	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58248679	T	T	58248679	1	4	59	0	1	0	0	0	0	0	0	0	11906	1363	47	2		2	PHACTR3	20	58248679	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5474473	58248679	4776841	1152	66775											
CDH26	60437	broad.mit.edu	37	chr20	58571578	58571578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgactaagacgcaatttgGccttgccagttcatgactga	10	9	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58571578	T	T	58571578	1	4	59	0	1	0	0	0	0	0	0	0	3140	1218	42	3		3	CDH26	20	58571578	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	322899	58571578	4453942	1153	66776											
PRPF6	24148	broad.mit.edu	37	chr20	62616311	62616311	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggaccctacgagaaagatGatgaggaagcagatgctatc	13	7	0	5			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62616311	A	A	62616311	3	1	59	1	0	0	0	0	1	0	0	0	12680	1290	45	4	302	4	PRPF6	20	62616311	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4044733	62616311	409209	1154	66777											
TPTE	7179	broad.mit.edu	37	chr21	10909473	10909474	+	Intron	DNP	GG	TT	TT													cagacccccatactctgcagGgaccatgtggatatatcagt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10909474	TT	TT	10909473	1	4	59	0	1	0	0	0	0	0	0	0	16554	1247	43	2		2	TPTE	21	10909473	Intron	DNP	GG	TCGA-17-Z028-01A-01W-0746-08		10909473	37220422	1155	66778											
BAGE2	85319	broad.mit.edu	37	chr21	11078574	11078574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaatctcatgataaaacTtgcacagattaggagttgtt	8	7	1	2	rs76805569		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11078574	A	A	11078574	1	1	59	0	1	0	0	0	0	0	0	0	1297	1624	56	5		5	BAGE2	21	11078574	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	169101	11078574	37051321	1156	66779											
BAGE2	85319	broad.mit.edu	37	chr21	11096881	11096881	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcacacctgtaatcccaGcactttgagaggccaaggca	10	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11096881	A	A	11096881	1	1	59	0	1	0	0	0	0	0	0	0	1297	986	34	4		4	BAGE2	21	11096881	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	18307	11096881	37033014	1157	66780											
POTED	317754	broad.mit.edu	37	chr21	15013641	15013641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcattctattgagtgctaaCtaaaagttccctttgtttac	6	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15013641	A	A	15013641	1	1	59	0	1	0	0	0	0	0	0	0	12359	580	20	3		3	POTED	21	15013641	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3916760	15013641	33116254	1158	66781											
LIPI	149998	broad.mit.edu	37	chr21	15561448	15561448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagttgtagcaccccggctCcagtctactacaattacatt	6	12	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15561448	A	A	15561448	3	1	59	1	0	0	0	0	1	0	0	0	8898	856	30	3	1079	3	LIPI	21	15561448	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	547807	15561448	32568447	1159	66782											
GRIK1	2897	broad.mit.edu	37	chr21	30949368	30949368	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcatctgccgaatctatGggggattccattctctctac	8	11	5	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30949368	T	T	30949368	2	4	59	1	0	0	0	0	0	0	0	1	6839	1335	47	2		2	GRIK1	21	30949368	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	15387920	30949368	17180527	1160	66783											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127527	32127527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccagagccagagccatatCcacagccatagccagttcca	8	15	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32127527	A	A	32127527	3	1	59	1	0	0	0	0	1	0	0	0	8609	855	30	3	71	3	KRTAP21-1	21	32127527	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1178159	32127527	16002368	1161	66784											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253685	32253685	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtctcttgacagtggtcCaggagccaagagccagtctg	13	11	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32253685	T	T	32253685	2	4	59	1	0	0	0	0	0	0	0	1	8588	581	21	4		4	KRTAP11-1	21	32253685	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	126158	32253685	15876210	1162	66785											
TIAM1	7074	broad.mit.edu	37	chr21	32524991	32524991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaagcttttccaaatcaGgtaccagtctcactccatct	4	14	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32524991	T	T	32524991	3	4	59	1	0	0	0	0	1	0	0	0	16013	1000	35	2	1486	2	TIAM1	21	32524991	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	271306	32524991	15604904	1163	66786											
TTC3	7267	broad.mit.edu	37	chr21	38537944	38537944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttttcccagaagaaactcGacagatactagaaaaagcag	8	8	0	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38537944	T	T	38537944	3	4	59	1	0	0	0	0	1	0	0	0	16823	1058	37	3	3554	3	TTC3	21	38537944	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6012953	38537944	9591951	1164	66787											
DSCR4	10281	broad.mit.edu	37	chr21	39448557	39448557	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttatgatggctttaaaTatgtttatgatgtttacaag	7	2	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39448557	C	C	39448557	1	2	59	0	1	0	0	0	0	0	0	0	4812	1421	49	5		5	DSCR4	21	39448557	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	910613	39448557	8681338	1165	66788											
BRWD1	54014	broad.mit.edu	37	chr21	40607685	40607685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcgatctatgacagtcaCatgagcacccagcagggcag	10	11	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40607685	A	A	40607685	1	1	59	0	1	0	0	0	0	0	0	0	1534	493	17	3		3	BRWD1	21	40607685	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1159128	40607685	7522210	1166	66789											
SH3BGR	6450	broad.mit.edu	37	chr21	40863653	40863653	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcacataggtgtcgaagAagcttgcttagaaatgtccc	11	8	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40863653	C	C	40863653	1	2	59	0	1	0	0	0	0	0	0	0	14353	261	9	5		5	SH3BGR	21	40863653	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	255968	40863653	7266242	1167	66790											
UMODL1	89766	broad.mit.edu	37	chr21	43495966	43495966	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcaggcaaaggccagtggAgagggctggtgggcagcttc	18	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43495966	G	G	43495966	1	3	59	0	1	0	0	0	0	0	0	0	17106	319	11	5		5	UMODL1	21	43495966	Intron	SNP	A	TCGA-17-Z028-01A-01W-0746-08	2632313	43495966	4633929	1168	66791											
ABCG1	9619	broad.mit.edu	37	chr21	43621892	43621892	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctcagatccagactgggcTtgtttcaactcgttccgtgg	11	11	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43621892	A	A	43621892	1	1	59	0	1	0	0	0	0	0	0	0	68	1624	56	5		5	ABCG1	21	43621892	Intron	SNP	T	TCGA-17-Z028-01A-01W-0746-08	125926	43621892	4508003	1169	66792											
RSPH1	89765	broad.mit.edu	37	chr21	43892924	43892924	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatctcctctcggctcacttCatcttagtcctggaggtctg	9	13	6	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43892924	G	G	43892924	1	3	59	0	1	0	0	0	0	0	0	0	13813	841	29	4		4	RSPH1	21	43892924	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	271032	43892924	4236971	1170	66793											
KRTAP10-9	386676	broad.mit.edu	37	chr21	46047096	46047096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaccccagcatggccgCgtccaccatgtccatccgct	7	21	0	0	rs143023999	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46047096	A	A	46047096	3	1	59	1	0	0	0	0	1	0	0	0	8587	768	27	3	10	3	KRTAP10-9	21	46047096	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2154172	46047096	2082799	1171	66794											
DIP2A	23181	broad.mit.edu	37	chr21	47924225	47924225	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaagagcagcttaatactCatttgacttaacagccactt	5	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47924225	T	T	47924225	1	4	59	0	1	0	0	0	0	0	0	0	4567	841	29	4		4	DIP2A	21	47924225	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1877129	47924225	205670	1172	66795											
DIP2A	23181	broad.mit.edu	37	chr21	47961607	47961607	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgctgcaggcaaggtggGcccacctccctggaatttca	11	13	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47961607	A	A	47961607	1	1	59	0	1	0	0	0	0	0	0	0	4567	1218	42	4		4	DIP2A	21	47961607	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	37382	47961607	168288	1173	66796											
POTEH	23784	broad.mit.edu	37	chr22	16267010	16267010	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtggaattaatccatcaTcaccattgtcagcagtggca	9	9	3	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16267010	C	C	16267010	3	2	59	1	0	0	0	0	1	0	0	0	12363	1435	50	5	206	5	POTEH	22	16267010	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08		16267010	35037556	1174	66797											
CLTCL1	8218	broad.mit.edu	37	chr22	19245394	19245394	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaaaaaccgggagcacctgGagaagaagagaccccaggtc	13	11	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19245394	A	A	19245394	1	1	59	0	1	0	0	0	0	0	0	0	3599	1189	41	4		4	CLTCL1	22	19245394	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2978384	19245394	32059172	1175	66798											
PRAME	23532	broad.mit.edu	37	chr22	22890528	22890528	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcacaggatgggctccggGtcatagaaggttctgtcccc	15	11	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22890528	C	C	22890528	3	2	59	1	0	0	0	0	1	0	0	0	12525	1252	44	4	42	4	PRAME	22	22890528	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3645134	22890528	28414038	1176	66799											
MMP11	4320	broad.mit.edu	37	chr22	24123581	24123581	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgaggatgcccagggccacAtttggttcttccaaggtgag	13	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24123581	G	G	24123581	3	3	59	1	0	0	0	0	1	0	0	0	9743	217	8	5	1082	5	MMP11	22	24123581	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1233053	24123581	27180985	1177	66800											
SMARCB1	6598	broad.mit.edu	37	chr22	24143088	24143088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcctggtgggcaggatcaGgctcctatactgactgggag	14	9	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24143088	T	T	24143088	1	4	59	0	1	0	0	0	0	0	0	0	14888	1015	35	2		2	SMARCB1	22	24143088	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	19507	24143088	27161478	1178	66801											
MYO18B	84700	broad.mit.edu	37	chr22	26184659	26184659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacaacccaacttcaaccCaacttcatccctggctgagc	4	17	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26184659	A	A	26184659	1	1	59	0	1	0	0	0	0	0	0	0	10160	609	21	2		2	MYO18B	22	26184659	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2041571	26184659	25119907	1179	66802											
MYO18B	84700	broad.mit.edu	37	chr22	26388390	26388390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagacagacctggagacatCcattcggcggattgccgacc	11	14	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26388390	A	A	26388390	3	1	59	1	0	0	0	0	1	0	0	0	10160	855	30	3	6372	3	MYO18B	22	26388390	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	203731	26388390	24916176	1180	66803											
SEZ6L	23544	broad.mit.edu	37	chr22	26643921	26643921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgggctgtctccttgatGtccctgcctgccctcagcct	9	17	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26643921	T	T	26643921	1	4	59	0	1	0	0	0	0	0	0	0	14256	1392	48	3		3	SEZ6L	22	26643921	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	255531	26643921	24660645	1181	66804											
SEZ6L	23544	broad.mit.edu	37	chr22	26691846	26691846	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatcgcagcaaaggaacaGgcaaactccttggcaatcag	10	10	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26691846	A	A	26691846	1	1	59	0	1	0	0	0	0	0	0	0	14256	1015	35	4		4	SEZ6L	22	26691846	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	47925	26691846	24612720	1182	66805											
ASPHD2	57168	broad.mit.edu	37	chr22	26830423	26830423	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccctgggactgtgataaCggagcactatggacccacca	12	12	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26830423	G	G	26830423	3	3	59	1	0	0	0	0	1	0	0	0	1059	536	19	4	844	4	ASPHD2	22	26830423	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	138577	26830423	24474143	1183	66806											
EMID1	129080	broad.mit.edu	37	chr22	29654850	29654850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgccggcacaggcaccCccagcctccttcggggcaag	12	19	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29654850	A	A	29654850	3	1	59	1	0	0	0	0	1	0	0	0	5133	623	22	2	1307	2	EMID1	22	29654850	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2824427	29654850	21649716	1184	66807											
C22orf28	51493	broad.mit.edu	37	chr22	32790950	32790950	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttcgttttaaatgtaattCacatttgcaacaatctaaat	3	6	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32790950	T	T	32790950	1	4	59	0	1	0	0	0	0	0	0	0	2162	841	29	4		4	C22orf28	22	32790950	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3136100	32790950	18513616	1185	66808											
CSF2RB	1439	broad.mit.edu	37	chr22	37325814	37325814	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctcaggacgtcccagcaAgtggagcccagaggtttgct	13	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37325814	T	T	37325814	3	4	59	1	0	0	0	0	1	0	0	0	3969	72	3	5	701	5	CSF2RB	22	37325814	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	4534864	37325814	13978752	1186	66809											
SUN2	25777	broad.mit.edu	37	chr22	39134735	39134735	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggcccctggaaggcccAgcagttgcctgggtgcacat	14	12	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39134735	T	T	39134735	3	4	59	1	0	0	0	0	1	0	0	0	15510	188	7	5	361	5	SUN2	22	39134735	Missense_Mutation	SNP	A	TCGA-17-Z028-01A-01W-0746-08	1808921	39134735	12169831	1187	66810											
APOBEC3B	9582	broad.mit.edu	37	chr22	39380195	39380195	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgaaaataaagaggggcCgctcaaatctcctttgggac	11	8	2	2	rs143126732	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39380195	T	T	39380195	3	4	59	1	0	0	0	0	1	0	0	0	792	652	23	4	139	4	APOBEC3B	22	39380195	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	245460	39380195	11924371	1188	66811											
TAB1	10454	broad.mit.edu	37	chr22	39813817	39813817	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccatggccgttgtggcGgtccttctcaacaacaagct	13	12	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39813817	A	A	39813817	2	1	59	1	0	0	0	0	0	0	0	1	15614	1103	39	4		4	TAB1	22	39813817	Silent	SNP	G	TCGA-17-Z028-01A-01W-0746-08	433622	39813817	11490749	1189	66812											
WBP2NL	164684	broad.mit.edu	37	chr22	42397321	42397321	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacggcagtgacagtctgtgCatcatccaactgatgacaat	9	10	2	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42397321	T	T	42397321	1	4	59	0	1	0	0	0	0	0	0	0	17387	725	25	4		4	WBP2NL	22	42397321	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2583504	42397321	8907245	1190	66813											
EFCAB6	64800	broad.mit.edu	37	chr22	43995881	43995881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaccattttaaaataaCttgtgctgtgaggccagatg	10	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43995881	A	A	43995881	1	1	59	0	1	0	0	0	0	0	0	0	4979	580	20	3		3	EFCAB6	22	43995881	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1598560	43995881	7308685	1191	66814											
PARVB	29780	broad.mit.edu	37	chr22	44527484	44527484	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgcggccccgaggctGggcgctccggtggagcgtgg	19	14	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44527484	C	C	44527484	3	2	59	1	0	0	0	0	1	0	0	0	11563	1357	47	4	731	4	PARVB	22	44527484	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	531603	44527484	6777082	1192	66815											
C22orf9	23313	broad.mit.edu	37	chr22	45598866	45598866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcccccagctgtgcagccCttacccgctcgtgcatgggc	11	19	0	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45598866	A	A	45598866	1	1	59	0	1	0	0	0	0	0	0	0	2173	696	24	2		2	C22orf9	22	45598866	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1071382	45598866	5705700	1193	66816											
SAPS2	9701	broad.mit.edu	37	chr22	50854595	50854595	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggatgaagatgtgagtgtGctgcttaccgagcttcgtgc	14	8	0	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50854595	C	C	50854595	1	2	59	0	1	0	0	0	0	0	0	0	13949	1334	46	4		4	SAPS2	22	50854595	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	5255729	50854595	449971	1194	66817											
ACR	49	broad.mit.edu	37	chr22	51182598	51182598	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcagccaaccaatgtgtgCgcggggtatcctgtaggcaa	13	10	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51182598	T	T	51182598	2	4	59	1	0	0	0	0	0	0	0	1	169	776	27	4		4	ACR	22	51182598	Silent	SNP	C	TCGA-17-Z028-01A-01W-0746-08	328003	51182598	121968	1195	66818											
STS	412	broad.mit.edu	37	chrX	7175688	7175688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaatgggagggaggacttGgacaaagttagcaaaagagt	17	3	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7175688	T	T	7175688	1	4	59	0	1	0	0	0	0	0	0	0	15450	1363	47	2		2	STS	23	7175688	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08		7175688	148094872	1196	66819											
MAGEB6	158809	broad.mit.edu	37	chrX	26211920	26211920	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtgccagccttcctagtCttcctacccacactcctacc	5	19	1	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26211920	T	T	26211920	1	4	59	0	1	0	0	0	0	0	0	0	9271	928	32	4		4	MAGEB6	23	26211920	5'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	19036232	26211920	129058640	1197	66820											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29686657	29686657	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctagttaatatgctgctCtcgttacattgtgacagtta	7	7	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29686657	A	A	29686657	1	1	59	0	1	0	0	0	0	0	0	0	7731	928	32	3		3	IL1RAPL1	23	29686657	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	3474737	29686657	125583903	1198	66821											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29973110	29973110	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggagaagcaagtcccaaaCtctattcagtgaactagttt	8	8	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29973110	T	T	29973110	1	4	59	0	1	0	0	0	0	0	0	0	7731	580	20	4		4	IL1RAPL1	23	29973110	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	286453	29973110	125297450	1199	66822											
CXorf21	80231	broad.mit.edu	37	chrX	30577880	30577880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggattctgcatttgcaagCtgcttttctctttgatgctt	8	8	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30577880	A	A	30577880	3	1	59	1	0	0	0	0	1	0	0	0	4134	797	28	3	316	3	CXorf21	23	30577880	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	604770	30577880	124692680	1200	66823											
DMD	1756	broad.mit.edu	37	chrX	31497208	31497208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggttctttagttttcaattCcctcttgaaggcctgtgaaa	8	8	3	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31497208	T	T	31497208	3	4	59	1	0	0	0	0	1	0	0	0	4620	864	30	4	2699	4	DMD	23	31497208	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	919328	31497208	123773352	1201	66824											
DMD	1756	broad.mit.edu	37	chrX	32632478	32632478	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtccaagaggctcttccTccattttccttgttctttct	6	13	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32632478	A	A	32632478	3	1	59	1	0	0	0	0	1	0	0	0	4620	1551	54	5	10148	5	DMD	23	32632478	Missense_Mutation	SNP	T	TCGA-17-Z028-01A-01W-0746-08	1135270	32632478	122638082	1202	66825											
CXorf22	170063	broad.mit.edu	37	chrX	35938204	35938204	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgggagcgggaccttgtgaGagcgcctcctcacactgcgt	14	13	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35938204	A	A	35938204	1	1	59	0	1	0	0	0	0	0	0	0	4135	957	33	4		4	CXorf22	23	35938204	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3305726	35938204	119332356	1203	66826											
SRPX	8406	broad.mit.edu	37	chrX	38023952	38023952	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaccagcatatatacactCccctactctgggtagtaaac	6	12	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38023952	A	A	38023952	1	1	59	0	1	0	0	0	0	0	0	0	15282	870	30	3		3	SRPX	23	38023952	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2085748	38023952	117246608	1204	66827											
DUSP21	63904	broad.mit.edu	37	chrX	44703980	44703980	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagcccctgacatctgcCatcgatcttgcaccaagact	8	16	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44703980	A	A	44703980	1	1	59	0	1	0	0	0	0	0	0	0	4860	609	21	2		2	DUSP21	23	44703980	3'UTR	SNP	C	TCGA-17-Z028-01A-01W-0746-08	6680028	44703980	110566580	1205	66828											
GRIPAP1	56850	broad.mit.edu	37	chrX	48855786	48855786	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccttcctgccaggcctctGagggaaaacctcggacacca	11	15	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48855786	T	T	48855786	1	4	59	0	1	0	0	0	0	0	0	0	6855	1305	45	3		3	GRIPAP1	23	48855786	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	4151806	48855786	106414774	1206	66829											
PPP1R3F	89801	broad.mit.edu	37	chrX	49142834	49142834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcactatgcccggctggGgcgtggcgtggagctcatca	16	12	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49142834	T	T	49142834	3	4	59	1	0	0	0	0	1	0	0	0	12476	1232	43	2	1696	2	PPP1R3F	23	49142834	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	287048	49142834	106127726	1207	66830											
KDM5C	8242	broad.mit.edu	37	chrX	53223192	53223192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaggaatctggacagatgCagaatggagtaggaaggctg	15	5	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53223192	T	T	53223192	1	4	59	0	1	0	0	0	0	0	0	0	8205	725	25	4		4	KDM5C	23	53223192	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4080358	53223192	102047368	1208	66831											
KIF4A	24137	broad.mit.edu	37	chrX	69521901	69521901	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacaatctccttagagcaaaGaaagaaaagtgacaagtaag	8	6	1	4			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69521901	C	C	69521901	3	2	59	1	0	0	0	0	1	0	0	0	8373	942	33	4	686	4	KIF4A	23	69521901	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	16298709	69521901	85748659	1209	66832											
ABCB7	22	broad.mit.edu	37	chrX	74291487	74291487	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttcaaaaatccatcatatCtctgtgcttcatatctttca	2	11	7	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74291487	A	A	74291487	3	1	59	1	0	0	0	0	1	0	0	0	46	913	32	3	1226	3	ABCB7	23	74291487	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4769586	74291487	80979073	1210	66833											
ATRX	546	broad.mit.edu	37	chrX	76855270	76855270	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctataaattcatccataCtgtcttcatcaaaataaccc	3	11	4	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76855270	T	T	76855270	3	4	59	1	0	0	0	0	1	0	0	0	1212	565	20	4	1809	4	ATRX	23	76855270	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	2563783	76855270	78415290	1211	66834											
GPR174	84636	broad.mit.edu	37	chrX	78426508	78426508	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctctagagagaatcatgCctgctaattacacgtgtacc	7	10	2	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78426508	G	G	78426508	3	3	59	1	0	0	0	0	1	0	0	0	6737	739	26	4	6	4	GPR174	23	78426508	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1571238	78426508	76844052	1212	66835											
PABPC5	140886	broad.mit.edu	37	chrX	90690787	90690787	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaacttccgctttcccgcgGatgcagagtgggccttgaac	11	12	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90690787	T	T	90690787	3	4	59	1	0	0	0	0	1	0	0	0	11461	1174	41	3	213	3	PABPC5	23	90690787	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	12264279	90690787	64579773	1213	66836											
PCDH11X	27328	broad.mit.edu	37	chrX	91873877	91873877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctttgacaaccttcactCcacgccaacaggccagaccg	6	17	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873877	A	A	91873877	3	1	59	1	0	0	0	0	1	0	0	0	11602	855	30	3	4130	3	PCDH11X	23	91873877	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	1183090	91873877	63396683	1214	66837											
TAF7L	54457	broad.mit.edu	37	chrX	100533134	100533134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaagttggggattagagGgggataccaatactgtcatt	13	5	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100533134	T	T	100533134	1	4	59	0	1	0	0	0	0	0	0	0	15652	1247	43	2		2	TAF7L	23	100533134	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	8659257	100533134	54737426	1215	66838											
HNRNPH2	3188	broad.mit.edu	37	chrX	100667366	100667366	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggaagagattgttcagttCttttcagggttggaaattgt	12	3	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100667366	A	A	100667366	3	1	59	1	0	0	0	0	1	0	0	0	7334	912	32	3	392	3	HNRNPH2	23	100667366	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	134232	100667366	54603194	1216	66839											
NXF2B	728343	broad.mit.edu	37	chrX	101623622	101623622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtggtggtggtggtgGtggtggtgacagggaaagag	24	1	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101623622	A	A	101623622	1	1	59	0	1	0	0	0	0	0	0	0	10879	1276	44	4		4	NXF2B	23	101623622	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	956256	101623622	53646938	1217	66840											
RAB40AL	282808	broad.mit.edu	37	chrX	102193080	102193080	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaacagctgcaaaatttcTtaaggaaggcaccaaaagga	9	7	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102193080	C	C	102193080	2	2	59	1	0	0	0	0	0	0	0	1	13048	1596	56	5		5	RAB40AL	23	102193080	Silent	SNP	T	TCGA-17-Z028-01A-01W-0746-08	569458	102193080	53077480	1218	66841											
COL4A6	1288	broad.mit.edu	37	chrX	107421840	107421841	+	Intron	INS	-	C	C													atgtcccactactgctattgINScccccccagggcatctgggc							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107421841	C	C	107421840	6	5	59	0	1	1	1	0	0	0	0	0	3727	1334	46	0		0	COL4A6	23	107421840	Intron	INS	-	TCGA-17-Z028-01A-01W-0746-08	5228760	107421840	47848720	1219	66842											
CAPN6	827	broad.mit.edu	37	chrX	110495773	110495773	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtaaaattgtttttccaGgtcaagaacatcataatcta	5	6	3	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110495773	T	T	110495773	1	4	59	0	1	0	0	0	0	0	0	0	2656	1015	35	2		2	CAPN6	23	110495773	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	3073933	110495773	44774787	1220	66843											
CXorf61	203413	broad.mit.edu	37	chrX	115593079	115593079	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagagaggtcgtagactgcAagattgttgtctgtattgct	13	6	1	3			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115593079	G	G	115593079	2	3	59	1	0	0	0	0	0	0	0	1	4149	117	5	5		5	CXorf61	23	115593079	Silent	SNP	A	TCGA-17-Z028-01A-01W-0746-08	5097306	115593079	39677481	1221	66844											
SMARCA1	6594	broad.mit.edu	37	chrX	128631001	128631001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacaccCccacacaccttcaagagatg	3	19	1	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128631001	A	A	128631001	1	1	59	0	1	0	0	0	0	0	0	0	14882	638	22	2		2	SMARCA1	23	128631001	Intron	SNP	C	TCGA-17-Z028-01A-01W-0746-08	13037922	128631001	26639559	1222	66845											
FRMD7	90167	broad.mit.edu	37	chrX	131231470	131231470	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacacccacacacacaccGctctcctcttccgtcccctc	2	24	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131231470	A	A	131231470	1	1	59	0	1	0	0	0	0	0	0	0	6115	1102	38	4		4	FRMD7	23	131231470	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	2600469	131231470	24039090	1223	66846											
GPR112	139378	broad.mit.edu	37	chrX	135432188	135432188	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccacacaccctgaggcatCctccagaaccacaataactg	5	16	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135432188	T	T	135432188	3	4	59	1	0	0	0	0	1	0	0	0	6694	855	30	4	6333	4	GPR112	23	135432188	Missense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	4200718	135432188	19838372	1224	66847											
SPANXN1	494118	broad.mit.edu	37	chrX	144336802	144336802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttggccctttttctggtGgaatatcattgtggtgttcc	12	7	2	0			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144336802	T	T	144336802	1	4	59	0	1	0	0	0	0	0	0	0	15106	1363	47	2		2	SPANXN1	23	144336802	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	8904614	144336802	10933758	1225	66848											
SLITRK2	84631	broad.mit.edu	37	chrX	144906230	144906230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaaatattgctgagcgaGtcaaggaacttcccagcgca	9	10	2	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144906230	T	T	144906230	3	4	59	1	0	0	0	0	1	0	0	0	14857	1029	36	3	2289	3	SLITRK2	23	144906230	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08	569428	144906230	10364330	1226	66849											
MAGEA10	4109	broad.mit.edu	37	chrX	151304177	151304177	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggggagagagggagggtGtaagtggccacagctgagaa	19	6	0	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151304177	A	A	151304177	1	1	59	0	1	0	0	0	0	0	0	0	9252	1392	48	4		4	MAGEA10	23	151304177	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	6397947	151304177	3966383	1227	66850											
NSDHL	50814	broad.mit.edu	37	chrX	152037205	152037205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtgcaattgagggcaGgccacgtggaaagctgcagc	15	9	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152037205	T	T	152037205	1	4	59	0	1	0	0	0	0	0	0	0	10765	1015	35	2		2	NSDHL	23	152037205	Intron	SNP	G	TCGA-17-Z028-01A-01W-0746-08	733028	152037205	3233355	1228	66851											
ATP2B3	492	broad.mit.edu	37	chrX	152806888	152806888	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacttcatccccccaaagCaacccaagaccttcctgcag	5	17	1	2			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152806888	T	T	152806888	4	4	59	1	0	0	0	0	0	1	0	0	1145	711	25	4	286	4	ATP2B3	23	152806888	Nonsense_Mutation	SNP	C	TCGA-17-Z028-01A-01W-0746-08	769683	152806888	2463672	1229	66852											
VAMP7	6845	broad.mit.edu	37	chrX	155119359	155119359	+	Intron	DEL	G	-	-													ggtagaaaagtagaaaacaaGcttctaggtacataatttga							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155119359	-	-	155119359	6	5	59	0	1	1	0	1	0	0	0	0	17244	986	34	0		0	VAMP7	23	155119359	Intron	DEL	G	TCGA-17-Z028-01A-01W-0746-08	2312471	155119359	151201	1230	66853											
NLGN4Y	22829	broad.mit.edu	37	chrY	16936082	16936082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagggtttttaagtaccGgtgaccaggcagcaaaaggc	13	8	0	1			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16936082	T	T	16936082	3	4	59	1	0	0	0	0	1	0	0	0	10560	1116	39	1	804	1	NLGN4Y	24	16936082	Missense_Mutation	SNP	G	TCGA-17-Z028-01A-01W-0746-08		16936082	42437484	1231	66854											
RPS4Y2	140032	broad.mit.edu	37	chrY	22942809	22942809	+	Intron	DEL	A	-	-													acttattttatctccttctcAattacagggtaataaacctt							TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22942809	-	-	22942809	6	5	59	0	1	1	0	1	0	0	0	0	13758	145	5	0		0	RPS4Y2	24	22942809	Intron	DEL	A	TCGA-17-Z028-01A-01W-0746-08	6006727	22942809	36430757	1232	66855											
CAMTA1	23261	broad.mit.edu	37	chr1	7797434	7797434	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaattgccaggtcacgGggtcatgtgaaattagcaga	14	6	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7797434	T	T	7797434	2	4	60	1	0	0	0	0	0	0	0	1	2639	1219	43	2		2	CAMTA1	1	7797434	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08		7797434	241453187	1	66856											
C1orf158	93190	broad.mit.edu	37	chr1	12819079	12819079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagtgggatgcctcagaGtgggataaacaagtgtgttt	14	4	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12819079	T	T	12819079	1	4	60	0	1	0	0	0	0	0	0	0	2027	1044	36	3		3	C1orf158	1	12819079	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5021645	12819079	236431542	2	66857											
PDPN	10630	broad.mit.edu	37	chr1	13940302	13940302	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattgttgagacgaattgcGttcttttctggattgcagtc	10	6	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13940302	A	A	13940302	1	1	60	0	1	0	0	0	0	0	0	0	11782	1160	40	4		4	PDPN	1	13940302	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1121223	13940302	235310319	3	66858											
KAZ	23254	broad.mit.edu	37	chr1	15420702	15420702	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagccagtgcagccccacgCggcagagcctcagcctgtcg	12	17	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15420702	G	G	15420702	3	3	60	1	0	0	0	0	1	0	0	0	8058	759	27	4	1539	4	KAZ	1	15420702	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1480400	15420702	233829919	4	66859											
CELA2A	63036	broad.mit.edu	37	chr1	15783363	15783363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggatcttcctgtcctcccCtctcgcccccacccaacccc	5	23	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15783363	A	A	15783363	1	1	60	0	1	0	0	0	0	0	0	0	3241	696	24	2		2	CELA2A	1	15783363	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	362661	15783363	233467258	5	66860											
NBPF1	55672	broad.mit.edu	37	chr1	16905278	16905278	+	Intron	SNP	A	C	C													tcactagaacagagctttgcAtattgggcctcaacagaaac					rs146939257	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16905278	C	C	16905278	1	2	60	0	1	0	0	0	0	0	0	0	10286	232	8	5		5	NBPF1	1	16905278	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1121915	16905278	232345343	6	66861	309	2									
NBPF1	55672	broad.mit.edu	37	chr1	16905280	16905280	+	Intron	SNP	A	G	G													actagaacagagctttgcatAttgggcctcaacagaaactt					rs74391489	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16905280	G	G	16905280	1	3	60	0	1	0	0	0	0	0	0	0	10286	464	16	5		5	NBPF1	1	16905280	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2	16905280	232345341	7	66862	309	2									
UBR4	23352	broad.mit.edu	37	chr1	19452860	19452860	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcttcaccctcagcccctTgagctctctgcaccgcgagg	9	18	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19452860	A	A	19452860	1	1	60	0	1	0	0	0	0	0	0	0	17030	1827	63	5		5	UBR4	1	19452860	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2547580	19452860	229797761	8	66863											
KDM1A	23028	broad.mit.edu	37	chr1	23397635	23397635	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgttgggatagcagttttGaggagccaaaaaagggtaca	13	4	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23397635	C	C	23397635	1	2	60	0	1	0	0	0	0	0	0	0	8192	1305	45	4		4	KDM1A	1	23397635	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3944775	23397635	225852986	9	66864											
EYA3	2140	broad.mit.edu	37	chr1	28337580	28337580	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtagtctgggacaaagatgGacttgtagaagggtctcctg	14	6	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28337580	A	A	28337580	3	1	60	1	0	0	0	0	1	0	0	0	5373	1174	41	4	970	4	EYA3	1	28337580	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4939945	28337580	220913041	10	66865											
GMEB1	10691	broad.mit.edu	37	chr1	29037128	29037128	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaccaagtagagcagggagAagaacagtttctctatactc	10	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29037128	T	T	29037128	3	4	60	1	0	0	0	0	1	0	0	0	6551	246	9	5	1025	5	GMEB1	1	29037128	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	699548	29037128	220213493	11	66866											
TMEM39B	55116	broad.mit.edu	37	chr1	32542848	32542848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttctcacggcaacaggctgGagtctgtgccgatccctcat	11	13	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32542848	T	T	32542848	3	4	60	1	0	0	0	0	1	0	0	0	16285	1183	41	3	537	3	TMEM39B	1	32542848	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3505720	32542848	216707773	12	66867											
ADC	113451	broad.mit.edu	37	chr1	33559988	33559988	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccacttctcccttgccatAtggcccttggcaacccattg	7	16	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33559988	G	G	33559988	1	3	60	0	1	0	0	0	0	0	0	0	287	464	16	5		5	ADC	1	33559988	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1017140	33559988	215690633	13	66868											
CSMD2	114784	broad.mit.edu	37	chr1	34401648	34401648	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagcaactccctaggccactCgggcttcctggaactcattt	8	14	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34401648	T	T	34401648	1	4	60	0	1	0	0	0	0	0	0	0	3979	899	31	4		4	CSMD2	1	34401648	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	841660	34401648	214848973	14	66869											
CSMD2	114784	broad.mit.edu	37	chr1	34404288	34404288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgctgctgacttacctgGtgtttcccatgatcctgtac	8	13	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34404288	T	T	34404288	1	4	60	0	1	0	0	0	0	0	0	0	3979	1276	44	3		3	CSMD2	1	34404288	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2640	34404288	214846333	15	66870											
ZMYM6	9204	broad.mit.edu	37	chr1	35480591	35480591	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtaaaatgtaacttacatCagcattcttctgacacatac	4	9	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35480591	A	A	35480591	3	1	60	1	0	0	0	0	1	0	0	0	17830	826	29	3	3424	3	ZMYM6	1	35480591	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1076303	35480591	213770030	16	66871											
MACF1	23499	broad.mit.edu	37	chr1	39812816	39812816	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccaggacattttggaacaGactgccgctcaggtggatgc	12	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39812816	T	T	39812816	3	4	60	1	0	0	0	0	1	0	0	0	9232	933	33	3	10856	3	MACF1	1	39812816	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4332225	39812816	209437805	17	66872											
MKNK1	8569	broad.mit.edu	37	chr1	47042367	47042367	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgtacacccacctgacTtccaaacagccctttggcag	7	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47042367	A	A	47042367	1	1	60	0	1	0	0	0	0	0	0	0	9697	1624	56	5		5	MKNK1	1	47042367	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	7229551	47042367	202208254	18	66873											
CYP4B1	1580	broad.mit.edu	37	chr1	47282821	47282821	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgccagctcagcaagcctgTcacctttgtggatggccggt	12	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47282821	A	A	47282821	3	1	60	1	0	0	0	0	1	0	0	0	4218	1667	58	5	1209	5	CYP4B1	1	47282821	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	240454	47282821	201967800	19	66874											
AGBL4	84871	broad.mit.edu	37	chr1	49208588	49208588	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actacacttaaacccagactCgaaaataatgtgaggtatga	7	8	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49208588	A	A	49208588	1	1	60	0	1	0	0	0	0	0	0	0	377	899	31	3		3	AGBL4	1	49208588	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1925767	49208588	200042033	20	66875											
C1orf175	374977	broad.mit.edu	37	chr1	55148346	55148346	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcaatggagcagagatgtGgaggcagctgatactgtgta	15	6	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55148346	C	C	55148346	3	2	60	1	0	0	0	0	1	0	0	0	2036	1357	47	4	2445	4	C1orf175	1	55148346	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5939758	55148346	194102275	21	66876											
C8A	731	broad.mit.edu	37	chr1	57373737	57373737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagcaccattacataccGttcctgggggaggtcattaa	11	10	1	0	rs143908758	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57373737	T	T	57373737	3	4	60	1	0	0	0	0	1	0	0	0	2441	1145	40	3	1365	3	C8A	1	57373737	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2225391	57373737	191876884	22	66877											
FGGY	55277	broad.mit.edu	37	chr1	60130611	60130612	+	Intron	INS	-	A	A													gatactattattcccatggcINSaaaaaaaaaaatggcaattg					rs34041597		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60130612	A	A	60130611	6	5	60	0	1	1	1	0	0	0	0	0	5928	725	25	0		0	FGGY	1	60130611	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	2756874	60130611	189120010	23	66878											
FGGY	55277	broad.mit.edu	37	chr1	60133111	60133111	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagagaaggtcactttttGgcttggcagcaaatgggcat	14	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60133111	T	T	60133111	1	4	60	0	1	0	0	0	0	0	0	0	5928	1363	47	2		2	FGGY	1	60133111	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2500	60133111	189117510	24	66879											
DOCK7	85440	broad.mit.edu	37	chr1	62939744	62939744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagacagaaaaacctgggCaacttccaaaggcccctgca	8	13	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62939744	A	A	62939744	3	1	60	1	0	0	0	0	1	0	0	0	4732	710	25	3	313	3	DOCK7	1	62939744	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2806633	62939744	186310877	25	66880											
FOXD3	27022	broad.mit.edu	37	chr1	63789348	63789348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagatcccccgcgagccgGgcaacccgggcaagggcaac	13	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63789348	T	T	63789348	3	4	60	1	0	0	0	0	1	0	0	0	6056	1232	43	2	621	2	FOXD3	1	63789348	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	849604	63789348	185461273	26	66881											
CACHD1	57685	broad.mit.edu	37	chr1	65137394	65137394	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgctttggggatgctatttCctttctagctgcagtttaaa	10	7	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65137394	A	A	65137394	1	1	60	0	1	0	0	0	0	0	0	0	2563	870	30	3		3	CACHD1	1	65137394	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1348046	65137394	184113227	27	66882											
PDE4B	5142	broad.mit.edu	37	chr1	66379146	66379146	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaacacaccactctgtgacTaggtgtttctatgacatggg	9	9	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66379146	A	A	66379146	1	1	60	0	1	0	0	0	0	0	0	0	11734	1537	53	5		5	PDE4B	1	66379146	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1241752	66379146	182871475	28	66883											
SGIP1	84251	broad.mit.edu	37	chr1	67126087	67126087	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataaaagcagtgccttcgaGagctcccttaagtaaggtta	9	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67126087	T	T	67126087	1	4	60	0	1	0	0	0	0	0	0	0	14319	957	33	3		3	SGIP1	1	67126087	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	746941	67126087	182124534	29	66884											
SGIP1	84251	broad.mit.edu	37	chr1	67132980	67132980	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataactaaaacttacatacCcacattagcaaagctgtatt	3	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67132980	T	T	67132980	1	4	60	0	1	0	0	0	0	0	0	0	14319	638	22	4		4	SGIP1	1	67132980	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6893	67132980	182117641	30	66885											
WDR78	79819	broad.mit.edu	37	chr1	67299719	67299719	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccatttggagattcttcCatctgctgatatagaaacta	6	9	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67299719	A	A	67299719	4	1	60	1	0	0	0	0	0	1	0	0	17455	603	21	2	724	2	WDR78	1	67299719	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	166739	67299719	181950902	31	66886											
WDR78	79819	broad.mit.edu	37	chr1	67390500	67390500	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggccgaggctccggaatgTttgccgggcgtcatggcgac	17	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67390500	A	A	67390500	3	1	60	1	0	0	0	0	1	0	0	0	17455	1722	60	5	2656	5	WDR78	1	67390500	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	90781	67390500	181860121	32	66887											
DEPDC1	55635	broad.mit.edu	37	chr1	68954103	68954103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtttacttgtattggcCatgttgtacattatatattg	7	7	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68954103	A	A	68954103	3	1	60	1	0	0	0	0	1	0	0	0	4479	594	21	2	1792	2	DEPDC1	1	68954103	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1563603	68954103	180296518	33	66888											
LRRC7	57554	broad.mit.edu	37	chr1	70225942	70225942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatgccgatgtttccgaGgtgaagaagaaatcatctca	10	9	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70225942	T	T	70225942	3	4	60	1	0	0	0	0	1	0	0	0	9107	1000	35	2	57	2	LRRC7	1	70225942	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1271839	70225942	179024679	34	66889											
C1orf173	127254	broad.mit.edu	37	chr1	75102078	75102078	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggctgtaatcgaatTggaggctgcatatttcctgg	14	6	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75102078	C	C	75102078	2	2	60	1	0	0	0	0	0	0	0	1	2034	1799	63	5		5	C1orf173	1	75102078	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4876136	75102078	174148543	35	66890											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77528766	77528766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgcaagggcagtcatcacCgctttatcacagagaaacga	10	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77528766	A	A	77528766	3	1	60	1	0	0	0	0	1	0	0	0	15345	652	23	1	904	1	ST6GALNAC5	1	77528766	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2426688	77528766	171721855	36	66891											
ZZZ3	26009	broad.mit.edu	37	chr1	78097874	78097874	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtttttagtgggactacctCtggtaggggctgcccttcgt	13	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78097874	A	A	78097874	3	1	60	1	0	0	0	0	1	0	0	0	18385	913	32	3	1589	3	ZZZ3	1	78097874	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	569108	78097874	171152747	37	66892											
DNAJB4	11080	broad.mit.edu	37	chr1	78471020	78471020	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggtaagtattctctgTatatctttctgtctcttcag	8	7	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78471020	C	C	78471020	1	2	60	0	1	0	0	0	0	0	0	0	4662	1653	57	5		5	DNAJB4	1	78471020	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	373146	78471020	170779601	38	66893											
ELTD1	64123	broad.mit.edu	37	chr1	79387376	79387376	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgtgggtctcatttgaGtatgtcagctcacagccctc	12	10	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79387376	C	C	79387376	4	2	60	1	0	0	0	0	0	1	0	0	5126	1024	36	4	921	4	ELTD1	1	79387376	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	916356	79387376	169863245	39	66894											
SYDE2	84144	broad.mit.edu	37	chr1	85665887	85665892	+	Intron	DEL	AAACAG	-	-													aagacagaagcccagtcggtAaacagtaaggctcgcggtgc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85665892	-	-	85665887	6	5	60	0	1	1	0	1	0	0	0	0	15555	377	13	0		0	SYDE2	1	85665887	Intron	DEL	AAACAG	TCGA-17-Z030-01A-01W-0746-08	6278511	85665887	163584734	40	66895											
CLCA4	22802	broad.mit.edu	37	chr1	87029453	87029453	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatcgaagcaacaagGcatggctatttaaattttct	6	6	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87029453	T	T	87029453	5	4	60	1	0	0	0	0	0	0	1	0	3490	1217	42	3	572	3	CLCA4	1	87029453	Splice_Site	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1363566	87029453	162221168	41	66896											
ABCA4	24	broad.mit.edu	37	chr1	94505765	94505765	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgccagctgctgtcaccgCccgctttatttatttctcac	7	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94505765	G	G	94505765	1	3	60	0	1	0	0	0	0	0	0	0	34	754	26	4		4	ABCA4	1	94505765	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7476312	94505765	154744856	42	66897											
COL11A1	1301	broad.mit.edu	37	chr1	103345238	103345238	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagcagaacttatactcaCcgcacaaccatcatacagtg	5	13	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103345238	A	A	103345238	5	1	60	1	0	0	0	0	0	0	1	0	3699	521	18	3	153	3	COL11A1	1	103345238	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	8839473	103345238	145905383	43	66898											
COL11A1	1301	broad.mit.edu	37	chr1	103467508	103467508	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaggaccaattggaccTtgtggaccaggaagacccta	12	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103467508	C	C	103467508	2	2	60	1	0	0	0	0	0	0	0	1	3699	1606	56	5		5	COL11A1	1	103467508	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	122270	103467508	145783113	44	66899											
VAV3	10451	broad.mit.edu	37	chr1	108115928	108115928	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctctgaaatttttggtGcagggtgcaacacgggattt	11	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108115928	T	T	108115928	1	4	60	0	1	0	0	0	0	0	0	0	17260	1334	46	3		3	VAV3	1	108115928	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4648420	108115928	141134693	45	66900											
AKNAD1	254268	broad.mit.edu	37	chr1	109395075	109395075	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtaattttacccaggggtAtggtcacagctgtatttcca	9	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109395075	G	G	109395075	3	3	60	1	0	0	0	0	1	0	0	0	464	449	16	5	2358	5	AKNAD1	1	109395075	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1279147	109395075	139855546	46	66901											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	112998615	112998615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagaagctctctagtcaGctggaagaggagcgctcccg	13	11	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112998615	T	T	112998615	3	4	60	1	0	0	0	0	1	0	0	0	4080	962	34	3	515	3	CTTNBP2NL	1	112998615	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3603540	112998615	136252006	47	66902											
DENND2C	163259	broad.mit.edu	37	chr1	115079501	115079501	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatggtggctcgtggtaatCcaggcattgagattcctgca	12	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115079501	A	A	115079501	1	1	60	0	1	0	0	0	0	0	0	0	4470	870	30	3		3	DENND2C	1	115079501	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2080886	115079501	134171120	48	66903											
BCAS2	10286	broad.mit.edu	37	chr1	115110861	115110861	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatctcataattcttacTgaccagggatacccaactag	5	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115110861	A	A	115110861	3	1	60	1	0	0	0	0	1	0	0	0	1356	1580	55	5	113	5	BCAS2	1	115110861	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	31360	115110861	134139760	49	66904											
AMPD1	270	broad.mit.edu	37	chr1	115220063	115220063	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtttgctccactcatcagGactgcggccatagatggaca	11	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115220063	A	A	115220063	3	1	60	1	0	0	0	0	1	0	0	0	585	1174	41	4	974	4	AMPD1	1	115220063	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	109202	115220063	134030558	50	66905											
TSPAN2	10100	broad.mit.edu	37	chr1	115596060	115596060	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcttaacactgattatGgtctcaatttcatcgatgca	8	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115596060	T	T	115596060	2	4	60	1	0	0	0	0	0	0	0	1	16769	1335	47	2		2	TSPAN2	1	115596060	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	375997	115596060	133654561	51	66906											
C1orf161	126868	broad.mit.edu	37	chr1	116666737	116666737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccaataaaaggcctggcCgggtacagggaggccaggga	16	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116666737	A	A	116666737	2	1	60	1	0	0	0	0	0	0	0	1	2029	639	23	1		1	C1orf161	1	116666737	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1070677	116666737	132583884	52	66907											
CD2	914	broad.mit.edu	37	chr1	117311375	117311375	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacctccccatggggcagcAgaaaactcattgtccccttc	7	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117311375	G	G	117311375	2	3	60	1	0	0	0	0	0	0	0	1	3009	175	7	5		5	CD2	1	117311375	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	644638	117311375	131939246	53	66908											
SPAG17	200162	broad.mit.edu	37	chr1	118558770	118558770	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggtcatggatttcaccctTatgggccattgatgactgac	11	9	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118558770	A	A	118558770	4	1	60	1	0	0	0	0	0	1	0	0	15095	1763	61	5	2646	5	SPAG17	1	118558770	Nonsense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1247395	118558770	130691851	54	66909											
TBX15	6913	broad.mit.edu	37	chr1	119441574	119441574	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catatcttggcctgaggccaGatgtgctatattcggttgag	12	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119441574	A	A	119441574	1	1	60	0	1	0	0	0	0	0	0	0	15774	957	33	4		4	TBX15	1	119441574	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	882804	119441574	129809047	55	66910											
WARS2	10352	broad.mit.edu	37	chr1	119659560	119659560	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaggaagtgcagataCaaacacagaagtcacagcca	9	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119659560	T	T	119659560	1	4	60	0	1	0	0	0	0	0	0	0	17377	493	17	4		4	WARS2	1	119659560	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	217986	119659560	129591061	56	66911											
NBPF7	343505	broad.mit.edu	37	chr1	120385043	120385043	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcccacctgcctgtcccacGgggccccctcacctgagctc	9	21	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120385043	C	C	120385043	1	2	60	0	1	0	0	0	0	0	0	0	10293	1131	39	4		4	NBPF7	1	120385043	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	725483	120385043	128865578	57	66912											
NOTCH2	4853	broad.mit.edu	37	chr1	120459056	120459056	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacttcttgcccattggggTgtgcttcaggctgaggaaag	14	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120459056	A	A	120459056	3	1	60	1	0	0	0	0	1	0	0	0	10643	1696	59	5	1130	5	NOTCH2	1	120459056	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	74013	120459056	128791565	58	66913											
NBPF9	400818	broad.mit.edu	37	chr1	144815073	144815073	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacccatggggttggagGtcacattattgcaagtgtcc	13	8	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144815073	T	T	144815073	1	4	60	0	1	0	0	0	0	0	0	0	10294	1276	44	3		3	NBPF9	1	144815073	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	24356017	144815073	104435548	59	66914											
ITGA10	8515	broad.mit.edu	37	chr1	145539419	145539419	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggcccacctgtgcatccaGaggagcttcaacacacaaac	8	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145539419	T	T	145539419	4	4	60	1	0	0	0	0	0	1	0	0	7943	943	33	3	3190	3	ITGA10	1	145539419	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	724346	145539419	103711202	60	66915											
FMO5	2330	broad.mit.edu	37	chr1	146658949	146658949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgtggaatatagagaagAaagataaaacattggtcact	10	4	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146658949	T	T	146658949	1	4	60	0	1	0	0	0	0	0	0	0	6016	261	9	5		5	FMO5	1	146658949	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1119530	146658949	102591672	61	66916											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858264	149858264	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggcctgattcttttataaCcaccttatgcaaattagggc	8	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149858264	G	G	149858264	1	3	60	0	1	0	0	0	0	0	0	0	7245	522	18	4		4	HIST2H2AC	1	149858264	5'Flank	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3199315	149858264	99392357	62	66917											
ECM1	1893	broad.mit.edu	37	chr1	150482377	150482377	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggagaaagggtgggctgctCacacattcccccttctatag	11	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150482377	A	A	150482377	1	1	60	0	1	0	0	0	0	0	0	0	4937	841	29	3		3	ECM1	1	150482377	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	624113	150482377	98768244	63	66918											
FLG	2312	broad.mit.edu	37	chr1	152280056	152280056	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggatccttgtcttcctcCagtgctggtcccggtccgtc	12	14	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152280056	T	T	152280056	3	4	60	1	0	0	0	0	1	0	0	0	5979	603	21	4	4883	4	FLG	1	152280056	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1797679	152280056	96970565	64	66919											
FLG	2312	broad.mit.edu	37	chr1	152285231	152285231	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgactggagctggtggcGggatccatgtctttctcctg	14	10	2	1	rs115087788	byFrequency;by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152285231	C	C	152285231	3	2	60	1	0	0	0	0	1	0	0	0	5979	1116	39	4	10058	4	FLG	1	152285231	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5175	152285231	96965390	65	66920											
IL6R	3570	broad.mit.edu	37	chr1	154437510	154437510	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccgaaacctgggcgcgcCaggccaccagggcagccagc	15	16	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154437510	T	T	154437510	1	4	60	0	1	0	0	0	0	0	0	0	7772	609	21	4		4	IL6R	1	154437510	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2152279	154437510	94813111	66	66921											
KCNN3	3782	broad.mit.edu	37	chr1	154680678	154680678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcttcgactccaggctgCcaatctgcttctccaggtct	8	16	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154680678	A	A	154680678	3	1	60	1	0	0	0	0	1	0	0	0	8150	739	26	3	229	3	KCNN3	1	154680678	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	243168	154680678	94569943	67	66922											
PMVK	10654	broad.mit.edu	37	chr1	154901623	154901623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtaggtgctggtgtcCaggagtctctggaagttcaa	13	8	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154901623	A	A	154901623	2	1	60	1	0	0	0	0	0	0	0	1	12239	581	21	2		2	PMVK	1	154901623	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	220945	154901623	94348998	68	66923											
ASH1L	55870	broad.mit.edu	37	chr1	155452241	155452241	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtacaactttgaagggtcCtaaaatttgaacaagaaaaa	7	5	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155452241	A	A	155452241	5	1	60	1	0	0	0	0	0	0	1	0	1045	695	24	2	8578	2	ASH1L	1	155452241	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	550618	155452241	93798380	69	66924											
GON4L	54856	broad.mit.edu	37	chr1	155737111	155737111	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaagatttctaaagtccTagttctacaactaaagcatt	6	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155737111	C	C	155737111	1	2	60	0	1	0	0	0	0	0	0	0	6636	1537	53	5		5	GON4L	1	155737111	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	284870	155737111	93513510	70	66925											
KIAA0907	22889	broad.mit.edu	37	chr1	155889692	155889692	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttagttcatagcttttTtgttacacactgtgcaaccc	5	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155889692	C	C	155889692	1	2	60	0	1	0	0	0	0	0	0	0	8269	1856	64	5		5	KIAA0907	1	155889692	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	152581	155889692	93360929	71	66926											
IQGAP3	128239	broad.mit.edu	37	chr1	156510717	156510717	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgcatgcactgggaggAagggaggaggcatcaggatt	20	5	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156510717	T	T	156510717	1	4	60	0	1	0	0	0	0	0	0	0	7886	261	9	5		5	IQGAP3	1	156510717	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	621025	156510717	92739904	72	66927											
ETV3L	440695	broad.mit.edu	37	chr1	157067534	157067534	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgttcaataaatgttgGtcgaatgaatgaatgagtta	11	3	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157067534	A	A	157067534	1	1	60	0	1	0	0	0	0	0	0	0	5322	1276	44	4		4	ETV3L	1	157067534	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	556817	157067534	92183087	73	66928											
CD1C	911	broad.mit.edu	37	chr1	158262720	158262720	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgagcctagaggttagggGagaggaaattttgaggatag	16	3	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158262720	T	T	158262720	1	4	60	0	1	0	0	0	0	0	0	0	3006	1189	41	3		3	CD1C	1	158262720	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1195186	158262720	90987901	74	66929											
CD1B	910	broad.mit.edu	37	chr1	158300792	158300792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccttgagtttgtgccCaggtactattggtaaaggac	12	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158300792	A	A	158300792	3	1	60	1	0	0	0	0	1	0	0	0	3005	595	21	2	899	2	CD1B	1	158300792	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	38072	158300792	90949829	75	66930											
CD1E	913	broad.mit.edu	37	chr1	158324884	158324884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatagccttcccatctacCactttcccattagttatttc	3	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158324884	A	A	158324884	1	1	60	0	1	0	0	0	0	0	0	0	3008	609	21	2		2	CD1E	1	158324884	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	24092	158324884	90925737	76	66931											
SPTA1	6708	broad.mit.edu	37	chr1	158609219	158609219	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttttaatgtcttcacagccCgttaattttacctaattaaa	4	8	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158609219	T	T	158609219	1	4	60	0	1	0	0	0	0	0	0	0	15234	667	23	4		4	SPTA1	1	158609219	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	284335	158609219	90641402	77	66932											
SPTA1	6708	broad.mit.edu	37	chr1	158622334	158622334	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgttttctgcctttttctCttgaatccattccagcatgt	6	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158622334	A	A	158622334	4	1	60	1	0	0	0	0	0	1	0	0	15234	922	32	3	4081	3	SPTA1	1	158622334	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	13115	158622334	90628287	78	66933											
SPTA1	6708	broad.mit.edu	37	chr1	158622401	158622401	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattataacgttgcaatagAcgacgtctgcgttcttctgc	8	10	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158622401	T	T	158622401	2	4	60	1	0	0	0	0	0	0	0	1	15234	262	10	5		5	SPTA1	1	158622401	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	67	158622401	90628220	79	66934											
OR6N1	128372	broad.mit.edu	37	chr1	158735699	158735699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcttcagctgcacataCatggaaaggatgctcccata	7	12	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158735699	A	A	158735699	3	1	60	1	0	0	0	0	1	0	0	0	11300	478	17	3	167	3	OR6N1	1	158735699	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	113298	158735699	90514922	80	66935											
OR6N1	128372	broad.mit.edu	37	chr1	158736113	158736113	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatggctaaatacctatcGtaggccatagctgtcaggag	11	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158736113	C	C	158736113	4	2	60	1	0	0	0	0	0	1	0	0	11300	1140	40	4	581	4	OR6N1	1	158736113	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	414	158736113	90514508	81	66936											
AIM2	9447	broad.mit.edu	37	chr1	159043057	159043057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctcctgaagacgttttGccaaaagcatataattcaac	5	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159043057	T	T	159043057	3	4	60	1	0	0	0	0	1	0	0	0	432	1319	46	3	818	3	AIM2	1	159043057	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	306944	159043057	90207564	82	66937											
VANGL2	57216	broad.mit.edu	37	chr1	160385651	160385651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaccgagtcccagtactcGggctattcctacaagtcggg	11	13	0	0	rs138071353		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160385651	T	T	160385651	2	4	60	1	0	0	0	0	0	0	0	1	17247	1103	39	1		1	VANGL2	1	160385651	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1342594	160385651	88864970	83	66938											
SLAMF1	6504	broad.mit.edu	37	chr1	160604647	160604647	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggtcccgttctcctgGgtcttgtttaaaactttaat	9	9	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160604647	T	T	160604647	2	4	60	1	0	0	0	0	0	0	0	1	14480	1219	43	2		2	SLAMF1	1	160604647	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	218996	160604647	88645974	84	66939											
SLAMF1	6504	broad.mit.edu	37	chr1	160607008	160607008	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaactgcaggcaaaagcGctgaactgaaacatttttct	7	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160607008	A	A	160607008	3	1	60	1	0	0	0	0	1	0	0	0	14480	1087	38	4	643	4	SLAMF1	1	160607008	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2361	160607008	88643613	85	66940											
ITLN1	55600	broad.mit.edu	37	chr1	160851976	160851976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataacaccattctcagtgCggagaaaatacaggccatct	8	10	2	2	rs117373725	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160851976	A	A	160851976	3	1	60	1	0	0	0	0	1	0	0	0	7980	768	27	3	785	3	ITLN1	1	160851976	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	244968	160851976	88398645	86	66941											
F11R	50848	broad.mit.edu	37	chr1	160968812	160968819	+	Intron	DEL	GCCCAGGG	-	-													gccccaggtggcccacccctGcccaggggaggcatactcac							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160968819	-	-	160968812	6	5	60	0	1	1	0	1	0	0	0	0	5381	1334	46	0		0	F11R	1	160968812	Intron	DEL	GCCCAGGG	TCGA-17-Z030-01A-01W-0746-08	116836	160968812	88281809	87	66942											
OLFML2B	25903	broad.mit.edu	37	chr1	161969894	161969894	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggcggccctgttgaccCcaactcacgctgctcttcaa	10	16	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161969894	A	A	161969894	1	1	60	0	1	0	0	0	0	0	0	0	10953	638	22	2		2	OLFML2B	1	161969894	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1001082	161969894	87280727	88	66943											
ALDH9A1	223	broad.mit.edu	37	chr1	165667583	165667583	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgcgcatccggccccaggGcgccccagcctccccggctc	11	23	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165667583	A	A	165667583	1	1	60	0	1	0	0	0	0	0	0	0	506	1218	42	4		4	ALDH9A1	1	165667583	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3697689	165667583	83583038	89	66944											
ILDR2	387597	broad.mit.edu	37	chr1	166925838	166925838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagagcatattctaaaagGgagtgtgcatgaaagataag	11	3	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166925838	T	T	166925838	1	4	60	0	1	0	0	0	0	0	0	0	7780	1247	43	2		2	ILDR2	1	166925838	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1258255	166925838	82324783	90	66945											
MAEL	84944	broad.mit.edu	37	chr1	166990296	166990296	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagaaataaacatttttccCcctggtattttcctgttact	4	9	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166990296	G	G	166990296	1	3	60	0	1	0	0	0	0	0	0	0	9242	638	22	4		4	MAEL	1	166990296	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	64458	166990296	82260325	91	66946											
DCAF6	55827	broad.mit.edu	37	chr1	168014281	168014281	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaacttcagatcagactAgcactgagagtgctaccaat	8	10	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168014281	G	G	168014281	3	3	60	1	0	0	0	0	1	0	0	0	4307	420	15	5	1961	5	DCAF6	1	168014281	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1023985	168014281	81236340	92	66947											
SELP	6403	broad.mit.edu	37	chr1	169562975	169562975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcctgctacaaaacaaaCacacacacatgcaagacata	5	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169562975	A	A	169562975	1	1	60	0	1	0	0	0	0	0	0	0	14132	493	17	3		3	SELP	1	169562975	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1548694	169562975	79687646	93	66948											
SELE	6401	broad.mit.edu	37	chr1	169698456	169698456	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgaactctccagcagGggaatggctgcacctcacag	13	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169698456	A	A	169698456	3	1	60	1	0	0	0	0	1	0	0	0	14126	1232	43	4	899	4	SELE	1	169698456	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	135481	169698456	79552165	94	66949											
SCYL3	57147	broad.mit.edu	37	chr1	169823654	169823654	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accttaaggggcctttcttgTgatgacacttttggcggctc	11	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169823654	G	G	169823654	2	3	60	1	0	0	0	0	0	0	0	1	14062	1683	59	5		5	SCYL3	1	169823654	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	125198	169823654	79426967	95	66950											
C1orf129	80133	broad.mit.edu	37	chr1	170967493	170967493	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatcaaaattccagtttctCgtatctctccctctgaatgt	4	11	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170967493	A	A	170967493	2	1	60	1	0	0	0	0	0	0	0	1	2016	871	31	3		3	C1orf129	1	170967493	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1143839	170967493	78283128	96	66951											
FMO2	2327	broad.mit.edu	37	chr1	171168556	171168556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatggatttgagggaaaaCgcatcctggtgattggaatg	14	5	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171168556	T	T	171168556	3	4	60	1	0	0	0	0	1	0	0	0	6013	536	19	4	570	4	FMO2	1	171168556	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	201063	171168556	78082065	97	66952											
SERPINC1	462	broad.mit.edu	37	chr1	173879971	173879971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgacatcggtgattcggCcttcggtcttattggacacc	11	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173879971	A	A	173879971	3	1	60	1	0	0	0	0	1	0	0	0	14222	739	26	3	727	3	SERPINC1	1	173879971	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2711415	173879971	75370650	98	66953											
RABGAP1L	9910	broad.mit.edu	37	chr1	174926950	174926950	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattgatttagatgctctctGatcatgctaactgtccaggt	9	8	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174926950	T	T	174926950	1	4	60	0	1	0	0	0	0	0	0	0	13073	1305	45	3		3	RABGAP1L	1	174926950	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1046979	174926950	74323671	99	66954											
RABGAP1L	9910	broad.mit.edu	37	chr1	174945135	174945135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacagcaactgaagattgGgtttggagaagatttccaca	12	6	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174945135	T	T	174945135	1	4	60	0	1	0	0	0	0	0	0	0	13073	1247	43	2		2	RABGAP1L	1	174945135	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	18185	174945135	74305486	100	66955											
TNR	7143	broad.mit.edu	37	chr1	175295679	175295679	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcgtcttccccttccagtCtccagggactcagattttta	6	14	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175295679	A	A	175295679	1	1	60	0	1	0	0	0	0	0	0	0	16461	928	32	3		3	TNR	1	175295679	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	350544	175295679	73954942	101	66956											
TNR	7143	broad.mit.edu	37	chr1	175372213	175372213	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttcttcccaagctaactgGaggcatccagctagtttgct	8	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372213	A	A	175372213	1	1	60	0	1	0	0	0	0	0	0	0	16461	1189	41	4		4	TNR	1	175372213	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	76534	175372213	73878408	102	66957											
TNR	7143	broad.mit.edu	37	chr1	175454460	175454460	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaactgtaaacagctttgagGacaaagacgtaagtagcaaa	9	6	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175454460	T	T	175454460	1	4	60	0	1	0	0	0	0	0	0	0	16461	1189	41	3		3	TNR	1	175454460	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	82247	175454460	73796161	103	66958											
TNR	7143	broad.mit.edu	37	chr1	175650435	175650435	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaagagaaggagaaaggaGacacaggtcaaagtcaaata	12	4	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175650435	A	A	175650435	1	1	60	0	1	0	0	0	0	0	0	0	16461	957	33	4		4	TNR	1	175650435	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	195975	175650435	73600186	104	66959											
PAPPA2	60676	broad.mit.edu	37	chr1	176734714	176734714	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattgttctctctggtttagGagccctcccagatggagctg	11	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176734714	T	T	176734714	1	4	60	0	1	0	0	0	0	0	0	0	11527	1189	41	3		3	PAPPA2	1	176734714	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1084279	176734714	72515907	105	66960											
PAPPA2	60676	broad.mit.edu	37	chr1	176740340	176740340	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgaatgttcctggtcttTggagttctacctacctcgct	9	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176740340	C	C	176740340	1	2	60	0	1	0	0	0	0	0	0	0	11527	1827	63	5		5	PAPPA2	1	176740340	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	5626	176740340	72510281	106	66961											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179815260	179815260	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggctggactggcagtacCaggtgtgaaattcggctcca	13	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179815260	A	A	179815260	2	1	60	1	0	0	0	0	0	0	0	1	16497	581	21	2		2	TOR1AIP2	1	179815260	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3074920	179815260	69435361	107	66962											
CEP350	9857	broad.mit.edu	37	chr1	179989052	179989052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttaaaatggtggtttaGttaactaacatattgtgact	7	3	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179989052	T	T	179989052	1	4	60	0	1	0	0	0	0	0	0	0	3284	1044	36	3		3	CEP350	1	179989052	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	173792	179989052	69261569	108	66963											
CACNA1E	777	broad.mit.edu	37	chr1	181480416	181480416	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatgggcaggcccagcacaGacatccaggaagggccaggc	14	13	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181480416	A	A	181480416	1	1	60	0	1	0	0	0	0	0	0	0	2568	957	33	4		4	CACNA1E	1	181480416	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1491364	181480416	67770205	109	66964											
CACNA1E	777	broad.mit.edu	37	chr1	181690872	181690872	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagcccaggtttctgatgcGcctgtcatttgctttttgta	9	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181690872	C	C	181690872	1	2	60	0	1	0	0	0	0	0	0	0	2568	1102	38	4		4	CACNA1E	1	181690872	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	210456	181690872	67559749	110	66965											
RGL1	23179	broad.mit.edu	37	chr1	183874048	183874048	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacagctattgcatgacccCagaccaaaagttcatccagt	6	13	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183874048	T	T	183874048	3	4	60	1	0	0	0	0	1	0	0	0	13384	594	21	4	1570	4	RGL1	1	183874048	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2183176	183874048	65376573	111	66966											
EDEM3	80267	broad.mit.edu	37	chr1	184692837	184692837	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaattctttatttcccaaCcattttgaggatgcaaaggc	7	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184692837	T	T	184692837	1	4	60	0	1	0	0	0	0	0	0	0	4953	522	18	4		4	EDEM3	1	184692837	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	818789	184692837	64557784	112	66967											
C1orf25	81627	broad.mit.edu	37	chr1	185089281	185089281	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtaggtgggggtgctgTactttaaaaggatagattta	14	3	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185089281	C	C	185089281	3	2	60	1	0	0	0	0	1	0	0	0	2056	1638	57	5	133	5	C1orf25	1	185089281	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	396444	185089281	64161340	113	66968											
HMCN1	83872	broad.mit.edu	37	chr1	185815125	185815125	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttaatgccattgattactGtttattgacctatgttattt	5	6	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185815125	C	C	185815125	1	2	60	0	1	0	0	0	0	0	0	0	7287	1392	48	4		4	HMCN1	1	185815125	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	725844	185815125	63435496	114	66969											
HMCN1	83872	broad.mit.edu	37	chr1	186157261	186157261	+	Intron	DEL	G	-	-													gaagtcactaactccaggaaGatgtggggttacagtaagta							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	186157261	-	-	186157261	6	5	60	0	1	1	0	1	0	0	0	0	7287	957	33	0		0	HMCN1	1	186157261	Intron	DEL	G	TCGA-17-Z030-01A-01W-0746-08	342136	186157261	63093360	115	66970											
PRG4	10216	broad.mit.edu	37	chr1	186269353	186269353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcactgcgggtaagtcCtgagagcgggtgtctcctct	14	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186269353	A	A	186269353	1	1	60	0	1	0	0	0	0	0	0	0	12587	696	24	2		2	PRG4	1	186269353	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	112092	186269353	62981268	116	66971											
KCNT2	343450	broad.mit.edu	37	chr1	196311306	196311306	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgtggtagacttcattccCggagcatctaccgtacatct	8	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196311306	T	T	196311306	3	4	60	1	0	0	0	0	1	0	0	0	8162	652	23	4	2007	4	KCNT2	1	196311306	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	10041953	196311306	52939315	117	66972											
KCNT2	343450	broad.mit.edu	37	chr1	196458915	196458915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaatttaaaatgtgataCaactcaaaataatcaaaata	2	4	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196458915	A	A	196458915	1	1	60	0	1	0	0	0	0	0	0	0	8162	493	17	3		3	KCNT2	1	196458915	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	147609	196458915	52791706	118	66973											
F13B	2165	broad.mit.edu	37	chr1	197026148	197026148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtagcatacataccaacaCactcaggaggaagtgtccat	8	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197026148	A	A	197026148	3	1	60	1	0	0	0	0	1	0	0	0	5384	478	17	3	843	3	F13B	1	197026148	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	567233	197026148	52224473	119	66974											
CRB1	23418	broad.mit.edu	37	chr1	197411437	197411437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggacgtaagcagcctctcCttttatgtctctctcttatt	7	11	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197411437	A	A	197411437	1	1	60	0	1	0	0	0	0	0	0	0	3880	696	24	2		2	CRB1	1	197411437	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	385289	197411437	51839184	120	66975											
PKP1	5317	broad.mit.edu	37	chr1	201287686	201287686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccaggctggggctgttacCtcggtccctagggcatcctg	14	13	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201287686	A	A	201287686	1	1	60	0	1	0	0	0	0	0	0	0	12079	696	24	2		2	PKP1	1	201287686	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3876249	201287686	47962935	121	66976											
LAD1	3898	broad.mit.edu	37	chr1	201352445	201352445	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagaagcccccacccacCcgtatggccgtgtggtatct	11	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201352445	A	A	201352445	2	1	60	1	0	0	0	0	0	0	0	1	8671	637	22	2		2	LAD1	1	201352445	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	64759	201352445	47898176	122	66977											
LGR6	59352	broad.mit.edu	37	chr1	202279399	202279399	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcaaggcctctgggcAgtgggaggctgaagaccttc	13	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202279399	T	T	202279399	3	4	60	1	0	0	0	0	1	0	0	0	8830	188	7	5	1690	5	LGR6	1	202279399	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	926954	202279399	46971222	123	66978											
MYBPH	4608	broad.mit.edu	37	chr1	203139616	203139616	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccctcatttctcaccccTgtcctcaccctccctgctta	2	21	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203139616	A	A	203139616	1	1	60	0	1	0	0	0	0	0	0	0	10108	1595	55	5		5	MYBPH	1	203139616	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	860217	203139616	46111005	124	66979											
PRELP	5549	broad.mit.edu	37	chr1	203452708	203452708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcctgcgatggattaaCctggacaacaaccgaatccg	10	12	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203452708	A	A	203452708	3	1	60	1	0	0	0	0	1	0	0	0	12579	506	18	3	398	3	PRELP	1	203452708	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	313092	203452708	45797913	125	66980											
LAX1	54900	broad.mit.edu	37	chr1	203740013	203740013	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgggactcctcgccatcctCctggtcgttgcggttttctg	12	14	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203740013	A	A	203740013	2	1	60	1	0	0	0	0	0	0	0	1	8720	842	30	3		3	LAX1	1	203740013	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	287305	203740013	45510608	126	66981											
REN	5972	broad.mit.edu	37	chr1	204125605	204125605	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagggaaggtactgtcacCctccaccacttctccccagg	10	15	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204125605	G	G	204125605	1	3	60	0	1	0	0	0	0	0	0	0	13332	638	22	4		4	REN	1	204125605	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	385592	204125605	45125016	127	66982											
NFASC	23114	broad.mit.edu	37	chr1	204915661	204915661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccagtggccctggcaaCgtgtccaaaaagagtctgca	12	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204915661	A	A	204915661	1	1	60	0	1	0	0	0	0	0	0	0	10454	551	19	3		3	NFASC	1	204915661	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	790056	204915661	44334960	128	66983											
NFASC	23114	broad.mit.edu	37	chr1	204924001	204924001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctagaccctgtcgtggtcCaagagggcgctcctttgacg	12	13	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204924001	A	A	204924001	3	1	60	1	0	0	0	0	1	0	0	0	10454	595	21	2	475	2	NFASC	1	204924001	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	8340	204924001	44326620	129	66984											
HHAT	55733	broad.mit.edu	37	chr1	210715173	210715173	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcccccctggtctcctGgtctgaatgactcagctgag	10	14	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210715173	A	A	210715173	1	1	60	0	1	0	0	0	0	0	0	0	7156	1363	47	4		4	HHAT	1	210715173	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5791172	210715173	38535448	130	66985											
KCNH1	3756	broad.mit.edu	37	chr1	210971035	210971035	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccggaaggccgggtgctccTtgaacaccttgcggttcagg	15	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210971035	A	A	210971035	3	1	60	1	0	0	0	0	1	0	0	0	8101	1609	56	5	1251	5	KCNH1	1	210971035	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	255862	210971035	38279586	131	66986											
KCNH1	3756	broad.mit.edu	37	chr1	211032938	211032938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcactccccagttcctcGgtttcatcatcatattcagc	4	15	6	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211032938	T	T	211032938	1	4	60	0	1	0	0	0	0	0	0	0	8101	1131	39	1		1	KCNH1	1	211032938	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	61903	211032938	38217683	132	66987											
RPS6KC1	26750	broad.mit.edu	37	chr1	213341189	213341189	+	Intron	DEL	T	-	-													tattttttacatgtccagacTtttttttttaggagagtcaa							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	213341189	-	-	213341189	6	5	60	0	1	1	0	1	0	0	0	0	13769	1624	56	0		0	RPS6KC1	1	213341189	Intron	DEL	T	TCGA-17-Z030-01A-01W-0746-08	2308251	213341189	35909432	133	66988											
KCTD3	51133	broad.mit.edu	37	chr1	215759829	215759829	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taccttatgtgcctgttcttCcttaacagaatcaaagaatc	5	10	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215759829	T	T	215759829	1	4	60	0	1	0	0	0	0	0	0	0	8180	870	30	4		4	KCTD3	1	215759829	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2418640	215759829	33490792	134	66989											
USH2A	7399	broad.mit.edu	37	chr1	215800755	215800755	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccttccttccttccttcCttccttccttccttccttcc	0	21	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215800755	T	T	215800755	1	4	60	0	1	0	0	0	0	0	0	0	17162	696	24	4		4	USH2A	1	215800755	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	40926	215800755	33449866	135	66990											
USH2A	7399	broad.mit.edu	37	chr1	215901279	215901279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatatatttaagccctAagtgaagaaaaatgagaagt	7	4	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215901279	T	T	215901279	1	4	60	0	1	0	0	0	0	0	0	0	17162	377	13	5		5	USH2A	1	215901279	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	100524	215901279	33349342	136	66991											
USH2A	7399	broad.mit.edu	37	chr1	216373253	216373253	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatatttctctatgggaccaGattgatttgagagtgttgtc	10	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216373253	A	A	216373253	3	1	60	1	0	0	0	0	1	0	0	0	17162	942	33	4	12319	4	USH2A	1	216373253	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	471974	216373253	32877368	137	66992											
TGFB2	7042	broad.mit.edu	37	chr1	218591992	218591992	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttggctgtgtccccacccAgatctcatcttgaatttcca	7	13	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218591992	T	T	218591992	1	4	60	0	1	0	0	0	0	0	0	0	15941	203	7	5		5	TGFB2	1	218591992	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2218739	218591992	30658629	138	66993											
SUSD4	55061	broad.mit.edu	37	chr1	223395385	223395385	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtttgtcagcctcactgTggagcctgagatgcataatg	12	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223395385	C	C	223395385	1	2	60	0	1	0	0	0	0	0	0	0	15528	1711	59	5		5	SUSD4	1	223395385	3'UTR	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4803393	223395385	25855236	139	66994											
SUSD4	55061	broad.mit.edu	37	chr1	223402472	223402472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcttggtacataaccaCcacccactatgtgcagatgg	8	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223402472	A	A	223402472	1	1	60	0	1	0	0	0	0	0	0	0	15528	522	18	3		3	SUSD4	1	223402472	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7087	223402472	25848149	140	66995											
ZNF678	339500	broad.mit.edu	37	chr1	227894189	227894189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattaaataacattaaactGtatacgtgtccatatactta	3	6	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227894189	T	T	227894189	1	4	60	0	1	0	0	0	0	0	0	0	18212	1392	48	3		3	ZNF678	1	227894189	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4491717	227894189	21356432	141	66996											
URB2	9816	broad.mit.edu	37	chr1	229772365	229772365	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttacagctcagttcagctctCttggtacatattgcttagaa	7	9	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229772365	A	A	229772365	3	1	60	1	0	0	0	0	1	0	0	0	17151	913	32	3	2015	3	URB2	1	229772365	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1878176	229772365	19478256	142	66997											
PGBD5	79605	broad.mit.edu	37	chr1	230472853	230472853	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggctccccacttgactaaCcttgcttctcaaactcttca	4	16	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230472853	T	T	230472853	5	4	60	1	0	0	0	0	0	0	1	0	11879	521	18	4	514	4	PGBD5	1	230472853	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	700488	230472853	18777768	143	66998											
GNPAT	8443	broad.mit.edu	37	chr1	231406498	231406498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaatgaattgtctttgtGtgtagataataaacctgctg	9	4	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231406498	T	T	231406498	1	4	60	0	1	0	0	0	0	0	0	0	6605	1392	48	3		3	GNPAT	1	231406498	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	933645	231406498	17844123	144	66999											
PCNXL2	80003	broad.mit.edu	37	chr1	233158234	233158234	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgaggttggaagagaagcTgcgggcatgtggaagggaga	19	4	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233158234	A	A	233158234	1	1	60	0	1	0	0	0	0	0	0	0	11686	1595	55	5		5	PCNXL2	1	233158234	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1751736	233158234	16092387	145	67000											
RBM34	23029	broad.mit.edu	37	chr1	235294908	235294908	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagtctccacatttcaCatacaccatccataaagaag	6	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235294908	A	A	235294908	1	1	60	0	1	0	0	0	0	0	0	0	13239	493	17	3		3	RBM34	1	235294908	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2136674	235294908	13955713	146	67001											
NID1	4811	broad.mit.edu	37	chr1	236148782	236148782	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttgtccacgcagtcaaaGgccagtccaatgatgacttt	8	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236148782	A	A	236148782	2	1	60	1	0	0	0	0	0	0	0	1	10509	987	35	4		4	NID1	1	236148782	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	853874	236148782	13101839	147	67002											
RYR2	6262	broad.mit.edu	37	chr1	237754274	237754274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattatgcccaggaaaagcCctctcgtctgaaacaaaggt	9	10	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237754274	A	A	237754274	3	1	60	1	0	0	0	0	1	0	0	0	13880	623	22	2	4264	2	RYR2	1	237754274	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1605492	237754274	11496347	148	67003											
RYR2	6262	broad.mit.edu	37	chr1	237886376	237886376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctatctttagattgtaacCttgtttttagattcccatct	4	9	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237886376	A	A	237886376	1	1	60	0	1	0	0	0	0	0	0	0	13880	696	24	2		2	RYR2	1	237886376	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	132102	237886376	11364245	149	67004											
RYR2	6262	broad.mit.edu	37	chr1	237886437	237886437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttctgcagttggaggatCctgctattagatggcaaatg	11	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237886437	A	A	237886437	3	1	60	1	0	0	0	0	1	0	0	0	13880	855	30	3	10858	3	RYR2	1	237886437	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	61	237886437	11364184	150	67005											
RYR2	6262	broad.mit.edu	37	chr1	237994085	237994085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctaatggctctcttttcCtctggagtaggttgacttaa	9	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237994085	T	T	237994085	1	4	60	0	1	0	0	0	0	0	0	0	13880	696	24	4		4	RYR2	1	237994085	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	107648	237994085	11256536	151	67006											
RGS7	6000	broad.mit.edu	37	chr1	240939344	240939344	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtacacacaaaaataacaAtttaggtcctttgctcatgc	5	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240939344	G	G	240939344	1	3	60	0	1	0	0	0	0	0	0	0	13419	116	4	5		5	RGS7	1	240939344	3'UTR	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2945259	240939344	8311277	152	67007											
FH	2271	broad.mit.edu	37	chr1	241675424	241675424	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacgagaggaaaatgatcaTttaatttaccttcagctacc	6	10	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241675424	C	C	241675424	3	2	60	1	0	0	0	0	1	0	0	0	5932	1493	52	5	1162	5	FH	1	241675424	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	736080	241675424	7575197	153	67008											
EXO1	9156	broad.mit.edu	37	chr1	242024098	242024098	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcatttagtaaaaagcttGcacattattttttgctctct	6	7	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242024098	A	A	242024098	1	1	60	0	1	0	0	0	0	0	0	0	5342	1334	46	4		4	EXO1	1	242024098	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	348674	242024098	7226523	154	67009											
PPPDE1	51029	broad.mit.edu	37	chr1	244855205	244855205	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttgttttagggagcacGgacttcctagaagatgatat	12	6	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244855205	T	T	244855205	2	4	60	1	0	0	0	0	0	0	0	1	12509	1103	39	1		1	PPPDE1	1	244855205	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2831107	244855205	4395416	155	67010											
HNRNPU	3192	broad.mit.edu	37	chr1	245023681	245023681	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgacacaccataggatgCtcttcctccagcccaaagaa	6	13	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245023681	T	T	245023681	3	4	60	1	0	0	0	0	1	0	0	0	7340	797	28	4	1548	4	HNRNPU	1	245023681	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	168476	245023681	4226940	156	67011											
KIF26B	55083	broad.mit.edu	37	chr1	245530526	245530526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagagcgggtccccaaccCaccaggccaaggtcagcctc	11	16	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245530526	A	A	245530526	3	1	60	1	0	0	0	0	1	0	0	0	8365	594	21	2	866	2	KIF26B	1	245530526	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	506845	245530526	3720095	157	67012											
SMYD3	64754	broad.mit.edu	37	chr1	245961707	245961707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcgcacacacacacacaCatacacacacatacacaccc	2	20	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245961707	A	A	245961707	1	1	60	0	1	0	0	0	0	0	0	0	14937	493	17	3		3	SMYD3	1	245961707	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	431181	245961707	3288914	158	67013											
SMYD3	64754	broad.mit.edu	37	chr1	246021924	246021924	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatatcgggaagccgttcaGaattgctgcttatgattgcc	11	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246021924	A	A	246021924	3	1	60	1	0	0	0	0	1	0	0	0	14937	942	33	4	348	4	SMYD3	1	246021924	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	60217	246021924	3228697	159	67014											
AHCTF1	25909	broad.mit.edu	37	chr1	247061489	247061489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatccaaccaaaagaaacaaTagagttaaaaatcatctcac	4	9	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247061489	A	A	247061489	1	1	60	0	1	0	0	0	0	0	0	0	408	1421	49	5		5	AHCTF1	1	247061489	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1039565	247061489	2189132	160	67015											
C1orf150	148823	broad.mit.edu	37	chr1	247719882	247719882	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accccttagggccgctataaTagagttctttggtgattacc	9	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247719882	G	G	247719882	1	3	60	0	1	0	0	0	0	0	0	0	2024	1421	49	5		5	C1orf150	1	247719882	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	658393	247719882	1530739	161	67016											
OR1C1	26188	broad.mit.edu	37	chr1	247920915	247920915	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgctctcaggcatatggGgggatgaagggctgaaatag	16	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247920915	A	A	247920915	3	1	60	1	0	0	0	0	1	0	0	0	11046	1232	43	4	152	4	OR1C1	1	247920915	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	201033	247920915	1329706	162	67017											
OR1C1	26188	broad.mit.edu	37	chr1	247921140	247921140	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacattgaaggagacgtcaGagcaagagagctgcaggaga	14	6	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921140	T	T	247921140	3	4	60	1	0	0	0	0	1	0	0	0	11046	942	33	3	377	3	OR1C1	1	247921140	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	225	247921140	1329481	163	67018											
TRIM58	25893	broad.mit.edu	37	chr1	248028134	248028134	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgagcgacgctgcagagacTgcgggagagcaagagccggc	18	11	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248028134	C	C	248028134	3	2	60	1	0	0	0	0	1	0	0	0	16656	1580	55	5	654	5	TRIM58	1	248028134	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	106994	248028134	1222487	164	67019											
TRIM58	25893	broad.mit.edu	37	chr1	248039828	248039828	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtcctagcgtagcgaaCgttcctggagtggggtgaag	16	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248039828	A	A	248039828	1	1	60	0	1	0	0	0	0	0	0	0	16656	551	19	3		3	TRIM58	1	248039828	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	11694	248039828	1210793	165	67020											
OR2L2	26246	broad.mit.edu	37	chr1	248201766	248201766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcctacttagtcagctctCcctcattgacctaaattaca	3	13	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248201766	A	A	248201766	3	1	60	1	0	0	0	0	1	0	0	0	11101	855	30	3	199	3	OR2L2	1	248201766	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	161938	248201766	1048855	166	67021											
OR2L13	284521	broad.mit.edu	37	chr1	248247390	248247390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagtgatcgatctcgtGtgcaccgcaatatgggaagc	13	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247390	T	T	248247390	1	4	60	0	1	0	0	0	0	0	0	0	11100	1392	48	3		3	OR2L13	1	248247390	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	45624	248247390	1003231	167	67022											
SNTG2	54221	broad.mit.edu	37	chr2	1285284	1285284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtgtttatgtggtgtGttgtgtggtgtgtgtgtttg	19	0	0	0	rs113659235		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1285284	A	A	1285284	1	1	60	0	1	0	0	0	0	0	0	0	14989	1392	48	4		4	SNTG2	2	1285284	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08		1285284	241914089	168	67023											
RNASEH1	246243	broad.mit.edu	37	chr2	3595451	3595451	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaaaccacttacataaacCattaatctctagtaaactta	1	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3595451	T	T	3595451	1	4	60	0	1	0	0	0	0	0	0	0	13522	609	21	4		4	RNASEH1	2	3595451	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2310167	3595451	239603922	169	67024											
RRM2	6241	broad.mit.edu	37	chr2	10267475	10267475	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgtgtgagttcaaccaTacacatacttgacaaaagaa	6	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10267475	C	C	10267475	1	2	60	0	1	0	0	0	0	0	0	0	13793	1421	49	5		5	RRM2	2	10267475	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	6672024	10267475	232931898	170	67025											
SMC6	79677	broad.mit.edu	37	chr2	17851630	17851630	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagatttccttcctttAgaaatacatgtttcaaacaa	4	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17851630	C	C	17851630	1	2	60	0	1	0	0	0	0	0	0	0	14901	435	15	5		5	SMC6	2	17851630	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	7584155	17851630	225347743	171	67026											
APOB	338	broad.mit.edu	37	chr2	21229930	21229930	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcttttgggaacacatagccGaatgccgacatctctatggt	10	10	1	0	rs138010392	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21229930	A	A	21229930	2	1	60	1	0	0	0	0	0	0	0	1	787	1049	37	4		4	APOB	2	21229930	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3378300	21229930	221969443	172	67027											
APOB	338	broad.mit.edu	37	chr2	21232297	21232297	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgtcctgtaggctttcCagatacactgcaactgtggc	11	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21232297	A	A	21232297	2	1	60	1	0	0	0	0	0	0	0	1	787	581	21	2		2	APOB	2	21232297	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2367	21232297	221967076	173	67028											
APOB	338	broad.mit.edu	37	chr2	21232405	21232405	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccattgagtctctgagtcacCtcacggattttgtcattggt	9	10	4	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21232405	G	G	21232405	3	3	60	1	0	0	0	0	1	0	0	0	787	680	24	4	6372	4	APOB	2	21232405	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	108	21232405	221966968	174	67029											
APOB	338	broad.mit.edu	37	chr2	21239532	21239532	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcgcacctggacgagtGtataagagaatcaagagatg	12	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21239532	A	A	21239532	1	1	60	0	1	0	0	0	0	0	0	0	787	1392	48	4		4	APOB	2	21239532	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7127	21239532	221959841	175	67030											
APOB	338	broad.mit.edu	37	chr2	21256304	21256304	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatggttagttttttcagttCctggagagtcttcaaaacag	10	6	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21256304	T	T	21256304	3	4	60	1	0	0	0	0	1	0	0	0	787	864	30	4	12784	4	APOB	2	21256304	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	16772	21256304	221943069	176	67031											
TP53I3	9540	broad.mit.edu	37	chr2	24305877	24305877	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacagtgacgtactgagccTggcccccaccggggagcaga	15	13	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24305877	G	G	24305877	3	3	60	1	0	0	0	0	1	0	0	0	16511	1580	55	5	730	5	TP53I3	2	24305877	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3049573	24305877	218893496	177	67032											
ITSN2	50618	broad.mit.edu	37	chr2	24484129	24484129	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagtggtctgcaaataTaacactttgatataagtata	7	4	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24484129	A	A	24484129	1	1	60	0	1	0	0	0	0	0	0	0	7997	1421	49	5		5	ITSN2	2	24484129	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	178252	24484129	218715244	178	67033											
ASXL2	55252	broad.mit.edu	37	chr2	25972653	25972653	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatggctgctggtgctggCgattctcagtgacacgtggc	15	9	1	1	rs146506022	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25972653	G	G	25972653	3	3	60	1	0	0	0	0	1	0	0	0	1071	768	27	4	2543	4	ASXL2	2	25972653	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1488524	25972653	217226720	179	67034											
C2orf39	92749	broad.mit.edu	37	chr2	26671557	26671557	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccccatgacccaactgcAgaagaggaggaggcagaaga	12	12	0	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26671557	T	T	26671557	5	4	60	1	0	0	0	0	0	0	1	0	2186	202	7	5	1437	5	C2orf39	2	26671557	Splice_Site	SNP	A	TCGA-17-Z030-01A-01W-0746-08	698904	26671557	216527816	180	67035											
CIB4	130106	broad.mit.edu	37	chr2	26806833	26806833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggaagaggacttgaggaGtcctgggggacacagcacca	15	9	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806833	T	T	26806833	1	4	60	0	1	0	0	0	0	0	0	0	3454	1044	36	3		3	CIB4	2	26806833	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	135276	26806833	216392540	181	67036											
IFT172	26160	broad.mit.edu	37	chr2	27703991	27703991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcccgctcctgagggtcaCggctataatcaaaagtttgt	9	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27703991	A	A	27703991	3	1	60	1	0	0	0	0	1	0	0	0	7627	536	19	3	4706	3	IFT172	2	27703991	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	897158	27703991	215495382	182	67037											
C2orf71	388939	broad.mit.edu	37	chr2	29295619	29295619	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagttttttcctgccaggcAcacagactcatgctgctcat	9	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29295619	T	T	29295619	4	4	60	1	0	0	0	0	0	1	0	0	2213	157	6	5	2365	5	C2orf71	2	29295619	Nonsense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1591628	29295619	213903754	183	67038											
ALK	238	broad.mit.edu	37	chr2	29754879	29754879	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagagggctgcaggtgcctGtgcaccgagacggccagtgt	16	12	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29754879	A	A	29754879	2	1	60	1	0	0	0	0	0	0	0	1	525	1368	48	4		4	ALK	2	29754879	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	459260	29754879	213444494	184	67039											
TTC27	55622	broad.mit.edu	37	chr2	33003038	33003038	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcagcgctgtgtgactctAgaacccgatgtaagtttgtt	10	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33003038	G	G	33003038	2	3	60	1	0	0	0	0	0	0	0	1	16821	407	15	5		5	TTC27	2	33003038	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3248159	33003038	210196335	185	67040											
SLC8A1	6546	broad.mit.edu	37	chr2	40402539	40402539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacagtggtagggagccaCtgctaaaaatgggtataccc	11	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40402539	A	A	40402539	1	1	60	0	1	0	0	0	0	0	0	0	14820	580	20	3		3	SLC8A1	2	40402539	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7399501	40402539	202796834	186	67041											
SIX2	10736	broad.mit.edu	37	chr2	45236131	45236131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcttgtgaaggtgctcgCaggcgggcagcgaccacagg	15	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45236131	A	A	45236131	3	1	60	1	0	0	0	0	1	0	0	0	14460	710	25	3	764	3	SIX2	2	45236131	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4833592	45236131	197963242	187	67042											
LHCGR	3973	broad.mit.edu	37	chr2	48935912	48935912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttgtctaagcctctcgGtttggggtactttattatgg	11	7	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48935912	T	T	48935912	1	4	60	0	1	0	0	0	0	0	0	0	8834	1276	44	3		3	LHCGR	2	48935912	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3699781	48935912	194263461	188	67043											
FSHR	2492	broad.mit.edu	37	chr2	49190243	49190243	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgagcatggccatgcGcttggcgatcctggtgtcac	14	10	1	2	rs121909660		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49190243	C	C	49190243	3	2	60	1	0	0	0	0	1	0	0	0	6133	1087	38	4	374	4	FSHR	2	49190243	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	254331	49190243	194009130	189	67044											
FSHR	2492	broad.mit.edu	37	chr2	49298823	49298824	+	Intron	DEL	AT	-	-													agaaaaagtttatttcactcAtagttctgcaggctgtacaa					rs76496060		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49298824	-	-	49298823	6	5	60	0	1	1	0	1	0	0	0	0	6133	232	8	0		0	FSHR	2	49298823	Intron	DEL	AT	TCGA-17-Z030-01A-01W-0746-08	108580	49298823	193900550	190	67045											
C2orf86	51057	broad.mit.edu	37	chr2	63379981	63379981	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatttcttgagttcaaaaTaatcacatacattatgcttt	4	7	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63379981	C	C	63379981	1	2	60	0	1	0	0	0	0	0	0	0	2223	1421	49	5		5	C2orf86	2	63379981	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	14081158	63379981	179819392	191	67046											
WDR92	116143	broad.mit.edu	37	chr2	68384702	68384702	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattctgccccagatgccctGgcatgttggctgtagttatc	10	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68384702	C	C	68384702	1	2	60	0	1	0	0	0	0	0	0	0	17466	1363	47	4		4	WDR92	2	68384702	5'Flank	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5004721	68384702	174814671	192	67047											
PROKR1	10887	broad.mit.edu	37	chr2	68872884	68872884	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgatagcagagagggGtgacatcagccttgcagaca	14	9	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68872884	C	C	68872884	1	2	60	0	1	0	0	0	0	0	0	0	12658	1276	44	4		4	PROKR1	2	68872884	5'Flank	SNP	G	TCGA-17-Z030-01A-01W-0746-08	488182	68872884	174326489	193	67048											
BMP10	27302	broad.mit.edu	37	chr2	69092908	69092908	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgggaattcttgaggTggaccaaggcctggataatt	12	7	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69092908	A	A	69092908	3	1	60	1	0	0	0	0	1	0	0	0	1463	1696	59	5	148	5	BMP10	2	69092908	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	220024	69092908	174106465	194	67049											
ALMS1	7840	broad.mit.edu	37	chr2	73677104	73677104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcacaacatagagaaaaGcccagcattttccaccagca	5	13	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73677104	T	T	73677104	3	4	60	1	0	0	0	0	1	0	0	0	535	962	34	3	3477	3	ALMS1	2	73677104	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4584196	73677104	169522269	195	67050											
TET3	200424	broad.mit.edu	37	chr2	74274579	74274579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacttcagagggaggctcCcacgccatcctcggagcccg	12	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74274579	T	T	74274579	3	4	60	1	0	0	0	0	1	0	0	0	15893	623	22	4	1132	4	TET3	2	74274579	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	597475	74274579	168924794	196	67051											
SLC4A5	57835	broad.mit.edu	37	chr2	74491375	74491375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgtaactgaccctctccCggagctctggccgcaggaga	13	14	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74491375	A	A	74491375	3	1	60	1	0	0	0	0	1	0	0	0	14771	652	23	1	2887	1	SLC4A5	2	74491375	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	216796	74491375	168707998	197	67052											
RTKN	6242	broad.mit.edu	37	chr2	74654356	74654356	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggtggtttccggggagcagGagtttcaattttcatgattt	14	5	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74654356	A	A	74654356	3	1	60	1	0	0	0	0	1	0	0	0	13833	1174	41	4	399	4	RTKN	2	74654356	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	162981	74654356	168545017	198	67053											
HTRA2	27429	broad.mit.edu	37	chr2	74757960	74757960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagactaaggtgggggctggGgtaggccaggtctggttgga	20	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74757960	T	T	74757960	1	4	60	0	1	0	0	0	0	0	0	0	7524	1247	43	2		2	HTRA2	2	74757960	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	103604	74757960	168441413	199	67054											
HK2	3099	broad.mit.edu	37	chr2	75104500	75104500	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatcaccacacgagttgacGggtagttggggaatgaggag	17	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75104500	A	A	75104500	1	1	60	0	1	0	0	0	0	0	0	0	7258	1131	39	4		4	HK2	2	75104500	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	346540	75104500	168094873	200	67055											
LRRTM4	80059	broad.mit.edu	37	chr2	77746033	77746033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaagccaataaaataaaGgacaaatgctccgactgcat	6	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77746033	T	T	77746033	3	4	60	1	0	0	0	0	1	0	0	0	9129	1000	35	2	824	2	LRRTM4	2	77746033	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2641533	77746033	165453340	201	67056											
LRRTM4	80059	broad.mit.edu	37	chr2	77746316	77746316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcggaggttgaagagacGtggaaaatgagcaaagttga	16	3	0	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77746316	T	T	77746316	3	4	60	1	0	0	0	0	1	0	0	0	9129	1145	40	3	1107	3	LRRTM4	2	77746316	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	283	77746316	165453057	202	67057											
CTNNA2	1496	broad.mit.edu	37	chr2	80389760	80389760	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctatctgctaggtagggatGagaattcattctgactttac	9	7	4	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80389760	T	T	80389760	1	4	60	0	1	0	0	0	0	0	0	0	4047	1305	45	3		3	CTNNA2	2	80389760	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2643444	80389760	162809613	203	67058											
KCMF1	56888	broad.mit.edu	37	chr2	85255017	85255017	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttttttataggtgtcAgctgtgatgcatgtttaaaa	8	4	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85255017	T	T	85255017	3	4	60	1	0	0	0	0	1	0	0	0	8070	188	7	5	28	5	KCMF1	2	85255017	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	4865257	85255017	157944356	204	67059											
CAPG	822	broad.mit.edu	37	chr2	85628502	85628502	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgacaggagacccagagccCtctgcaccccatcccactgg	9	18	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85628502	G	G	85628502	1	3	60	0	1	0	0	0	0	0	0	0	2647	696	24	4		4	CAPG	2	85628502	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	373485	85628502	157570871	205	67060											
PTCD3	55037	broad.mit.edu	37	chr2	86363713	86363713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcagccagctctctttGggtacagcctggaagtagcc	11	11	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86363713	T	T	86363713	1	4	60	0	1	0	0	0	0	0	0	0	12835	1363	47	2		2	PTCD3	2	86363713	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	735211	86363713	156835660	206	67061											
SMYD1	150572	broad.mit.edu	37	chr2	88410030	88410030	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgttccacaagaagcaatGaggactgcccagtggaggag	13	9	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88410030	A	A	88410030	2	1	60	1	0	0	0	0	0	0	0	1	14935	1285	45	4		4	SMYD1	2	88410030	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2046317	88410030	154789343	207	67062											
GPAT2	150763	broad.mit.edu	37	chr2	96690378	96690378	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacatcaaagccacgcaacAgtatctcctccgtcagccag	6	16	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96690378	T	T	96690378	3	4	60	1	0	0	0	0	1	0	0	0	6654	188	7	5	953	5	GPAT2	2	96690378	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	8280348	96690378	146508995	208	67063											
GPAT2	150763	broad.mit.edu	37	chr2	96691484	96691484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggatggcttctataacccCcagtcccatccaggcctctg	9	15	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96691484	T	T	96691484	1	4	60	0	1	0	0	0	0	0	0	0	6654	638	22	4		4	GPAT2	2	96691484	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1106	96691484	146507889	209	67064											
GPAT2	150763	broad.mit.edu	37	chr2	96691745	96691745	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgccccagcagcttctggCactgacgatgtattcctgcc	10	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96691745	G	G	96691745	3	3	60	1	0	0	0	0	1	0	0	0	6654	710	25	4	1260	4	GPAT2	2	96691745	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	261	96691745	146507628	210	67065											
VWA3B	200403	broad.mit.edu	37	chr2	98750229	98750229	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtcccaggagaaggaaCaagcatgcacggacacctgc	11	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98750229	G	G	98750229	1	3	60	0	1	0	0	0	0	0	0	0	17368	493	17	4		4	VWA3B	2	98750229	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2058484	98750229	144449144	211	67066											
VWA3B	200403	broad.mit.edu	37	chr2	98823108	98823108	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaacagtttgctcccattTatgttgaggctcctgagttc	9	9	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98823108	A	A	98823108	1	1	60	0	1	0	0	0	0	0	0	0	17368	1769	61	5		5	VWA3B	2	98823108	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	72879	98823108	144376265	212	67067											
CNGA3	1261	broad.mit.edu	37	chr2	98999890	98999890	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaacactaacaccagcaaCaacacggaggaggagtaagt	10	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98999890	T	T	98999890	2	4	60	1	0	0	0	0	0	0	0	1	3630	477	17	4		4	CNGA3	2	98999890	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	176782	98999890	144199483	213	67068											
INPP4A	3631	broad.mit.edu	37	chr2	99193731	99193731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgactccagccttcacaCttgagtttgacaaacccgtc	6	15	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99193731	T	T	99193731	1	4	60	0	1	0	0	0	0	0	0	0	7822	580	20	4		4	INPP4A	2	99193731	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	193841	99193731	144005642	214	67069											
AFF3	3899	broad.mit.edu	37	chr2	100185202	100185202	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttctccattgaacagacCcggccatccttgtaatagat	6	12	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100185202	T	T	100185202	1	4	60	0	1	0	0	0	0	0	0	0	358	638	22	4		4	AFF3	2	100185202	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	991471	100185202	143014171	215	67070											
NPAS2	4862	broad.mit.edu	37	chr2	101541645	101541645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaagaagcgtcgggacCagttcaatgttctcatcaaa	10	9	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101541645	A	A	101541645	3	1	60	1	0	0	0	0	1	0	0	0	10658	595	21	2	76	2	NPAS2	2	101541645	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1356443	101541645	141657728	216	67071											
C2orf29	55571	broad.mit.edu	37	chr2	101879006	101879006	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctatttccagaacgcCaatctgaattgccaacgcaa	6	13	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101879006	T	T	101879006	4	4	60	1	0	0	0	0	0	1	0	0	2183	595	21	4	695	4	C2orf29	2	101879006	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	337361	101879006	141320367	217	67072											
MERTK	10461	broad.mit.edu	37	chr2	112767571	112767571	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcccaaagcccatggtAattttacccttcatgaaata	6	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112767571	T	T	112767571	2	4	60	1	0	0	0	0	0	0	0	1	9572	349	13	5		5	MERTK	2	112767571	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	10888565	112767571	130431802	218	67073											
FBLN7	129804	broad.mit.edu	37	chr2	112942696	112942696	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcaccacattacaggacCtgcagggcctctcatgtggt	12	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112942696	A	A	112942696	1	1	60	0	1	0	0	0	0	0	0	0	5758	696	24	2		2	FBLN7	2	112942696	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	175125	112942696	130256677	219	67074											
ZC3H6	376940	broad.mit.edu	37	chr2	113081964	113081964	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacctggtccacctgaaattGtaggtcctcaaaatcaagct	7	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113081964	C	C	113081964	3	2	60	1	0	0	0	0	1	0	0	0	17697	1377	48	4	1614	4	ZC3H6	2	113081964	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	139268	113081964	130117409	220	67075											
IL1A	3552	broad.mit.edu	37	chr2	113535489	113535489	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagtgtcaccttgttagagGtgtctgcctattgggcttat	11	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113535489	C	C	113535489	1	2	60	0	1	0	0	0	0	0	0	0	7720	1276	44	4		4	IL1A	2	113535489	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	453525	113535489	129663884	221	67076											
DDX18	8886	broad.mit.edu	37	chr2	118572237	118572237	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggtgccagcgttcctGtgacgcgtttcctgttggcc	14	14	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118572237	T	T	118572237	1	4	60	0	1	0	0	0	0	0	0	0	4378	1392	48	3		3	DDX18	2	118572237	5'Flank	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5036748	118572237	124627136	222	67077											
CNTNAP5	129684	broad.mit.edu	37	chr2	124783392	124783392	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaactatctaagcgtactcGattgtgtctgctttgggcaa	9	9	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124783392	C	C	124783392	1	2	60	0	1	0	0	0	0	0	0	0	3682	1073	37	4		4	CNTNAP5	2	124783392	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6211155	124783392	118415981	223	67078											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530305	125530305	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgacttacaatcgtttctCccactcaagcctgtgccttg	6	14	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530305	A	A	125530305	1	1	60	0	1	0	0	0	0	0	0	0	3682	870	30	3		3	CNTNAP5	2	125530305	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	746913	125530305	117669068	224	67079											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530723	125530723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcataaatcatttctaatgGtaaatttcattctatacatt	3	6	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125530723	T	T	125530723	1	4	60	0	1	0	0	0	0	0	0	0	3682	1276	44	3		3	CNTNAP5	2	125530723	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	418	125530723	117668650	225	67080											
BIN1	274	broad.mit.edu	37	chr2	127826587	127826587	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtagtccaccagcttgcgCccccgcttggcaatgcgtga	11	15	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127826587	A	A	127826587	2	1	60	1	0	0	0	0	0	0	0	1	1438	726	26	3		3	BIN1	2	127826587	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2295864	127826587	115372786	226	67081											
IWS1	55677	broad.mit.edu	37	chr2	128252491	128252491	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtaaagttaatttttTcagtgctggctttttttgat	9	4	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128252491	C	C	128252491	3	2	60	1	0	0	0	0	1	0	0	0	8001	1792	62	5	731	5	IWS1	2	128252491	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	425904	128252491	114946882	227	67082											
MYO7B	4648	broad.mit.edu	37	chr2	128367139	128367139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggacacagtccccatggCggaggagcctgaggaggatg	16	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128367139	A	A	128367139	3	1	60	1	0	0	0	0	1	0	0	0	10177	768	27	3	2959	3	MYO7B	2	128367139	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	114648	128367139	114832234	228	67083											
POTEE	445582	broad.mit.edu	37	chr2	131976004	131976004	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggttgattccatgccggCtgcctcttctgtgaagaagc	12	10	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131976004	T	T	131976004	3	4	60	1	0	0	0	0	1	0	0	0	12360	797	28	4	31	4	POTEE	2	131976004	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3608865	131976004	111223369	229	67084											
NCKAP5	344148	broad.mit.edu	37	chr2	133733463	133733463	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggtagggaagctgagctCatggacttagcaagggccat	15	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133733463	A	A	133733463	1	1	60	0	1	0	0	0	0	0	0	0	10318	841	29	3		3	NCKAP5	2	133733463	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1757459	133733463	109465910	230	67085											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135881795	135881795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggcaagttaccatttgGtgcctgcgaagatcctatta	10	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135881795	T	T	135881795	3	4	60	1	0	0	0	0	1	0	0	0	13043	1261	44	3	843	3	RAB3GAP1	2	135881795	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2148332	135881795	107317578	231	67086											
UBXN4	23190	broad.mit.edu	37	chr2	136536527	136536527	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattttacagactgttggcAacacttacggtaatttttcg	7	7	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136536527	T	T	136536527	3	4	60	1	0	0	0	0	1	0	0	0	17042	130	5	5	1105	5	UBXN4	2	136536527	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	654732	136536527	106662846	232	67087											
LCT	3938	broad.mit.edu	37	chr2	136567367	136567367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagcagtctttttgccccCttggtgaggaaaccgttctt	11	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136567367	A	A	136567367	3	1	60	1	0	0	0	0	1	0	0	0	8765	680	24	2	3273	2	LCT	2	136567367	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	30840	136567367	106632006	233	67088											
LRP1B	53353	broad.mit.edu	37	chr2	141267539	141267539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcgcttccatctggacagtCcctttcaccatcacaaagcc	5	16	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141267539	A	A	141267539	3	1	60	1	0	0	0	0	1	0	0	0	9042	855	30	3	5603	3	LRP1B	2	141267539	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4700172	141267539	101931834	234	67089											
LRP1B	53353	broad.mit.edu	37	chr2	141459321	141459321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcggttaaatattttaacCtccttcaggttgactccaag	6	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141459321	A	A	141459321	3	1	60	1	0	0	0	0	1	0	0	0	9042	680	24	2	7611	2	LRP1B	2	141459321	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	191782	141459321	101740052	235	67090											
KIF5C	3800	broad.mit.edu	37	chr2	149853985	149853985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggaggggctgttgttgGgcattcagagtcgatctcag	17	7	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149853985	T	T	149853985	1	4	60	0	1	0	0	0	0	0	0	0	8377	1247	43	2		2	KIF5C	2	149853985	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8394664	149853985	93345388	236	67091											
NEB	4703	broad.mit.edu	37	chr2	152554122	152554122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctcgcagtaatttatgCtctttgcttttgtcttttca	8	8	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152554122	A	A	152554122	3	1	60	1	0	0	0	0	1	0	0	0	10397	797	28	3	25169	3	NEB	2	152554122	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2700137	152554122	90645251	237	67092											
FMNL2	114793	broad.mit.edu	37	chr2	153247051	153247051	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagagacagaagtccatgGggctgccaatctcagacgaa	11	11	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153247051	T	T	153247051	1	4	60	0	1	0	0	0	0	0	0	0	6010	1247	43	2		2	FMNL2	2	153247051	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	692929	153247051	89952322	238	67093											
FMNL2	114793	broad.mit.edu	37	chr2	153488720	153488720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgtggtggagccattccCtgcttaaacacttttcagaa	8	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153488720	A	A	153488720	1	1	60	0	1	0	0	0	0	0	0	0	6010	696	24	2		2	FMNL2	2	153488720	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	241669	153488720	89710653	239	67094											
PRPF40A	55660	broad.mit.edu	37	chr2	153512879	153512879	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgcttttccaattccccttCactcagttcgctgccagaag	7	15	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153512879	A	A	153512879	4	1	60	1	0	0	0	0	0	1	0	0	12677	835	29	3	62	3	PRPF40A	2	153512879	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	24159	153512879	89686494	240	67095											
PRPF40A	55660	broad.mit.edu	37	chr2	153512975	153512975	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggtttacgggctgagccTttgaaaaaagaatccaatat	10	6	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153512975	A	A	153512975	1	1	60	0	1	0	0	0	0	0	0	0	12677	1624	56	5		5	PRPF40A	2	153512975	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	96	153512975	89686398	241	67096											
GPD2	2820	broad.mit.edu	37	chr2	157426746	157426746	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggtatgtgaatggtcaCataggaatttcatgtctgcc	11	7	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157426746	T	T	157426746	1	4	60	0	1	0	0	0	0	0	0	0	6671	493	17	4		4	GPD2	2	157426746	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3913771	157426746	85772627	242	67097											
PKP4	8502	broad.mit.edu	37	chr2	159481557	159481557	+	Frame_Shift_Del	DEL	C	-	-													accgacccccgacctctgaaCcccagtgcatattcctccac							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159481557	-	-	159481557	7	5	60	1	0	1	0	1	0	0	0	0	12082	506	18	0	793	0	PKP4	2	159481557	Frame_Shift_Del	DEL	C	TCGA-17-Z030-01A-01W-0746-08	2054811	159481557	83717816	243	67098											
SLC4A10	57282	broad.mit.edu	37	chr2	162735795	162735795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaagtcccaatcccaaCcaggtaaaaagtataaaagc	8	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162735795	A	A	162735795	3	1	60	1	0	0	0	0	1	0	0	0	14765	507	18	3	1222	3	SLC4A10	2	162735795	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3254238	162735795	80463578	244	67099											
SCN7A	6332	broad.mit.edu	37	chr2	167262762	167262762	+	Frame_Shift_Del	DEL	C	-	-													caatctcctctaacttgagtCccagggttaattttatcagg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167262762	-	-	167262762	7	5	60	1	0	1	0	1	0	0	0	0	14036	842	30	0	675	0	SCN7A	2	167262762	Frame_Shift_Del	DEL	C	TCGA-17-Z030-01A-01W-0746-08	4526967	167262762	75936611	245	67100											
XIRP2	129446	broad.mit.edu	37	chr2	168102547	168102547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaaagatagaaattattGgcaagagcattaaagaaacc	8	4	0	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168102547	T	T	168102547	3	4	60	1	0	0	0	0	1	0	0	0	17557	1348	47	2	4675	2	XIRP2	2	168102547	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	839785	168102547	75096826	246	67101											
LRP2	4036	broad.mit.edu	37	chr2	170038133	170038133	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcccagtagaggtacctgtCagggcaaacacaaagggtca	12	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170038133	A	A	170038133	1	1	60	0	1	0	0	0	0	0	0	0	9043	841	29	3		3	LRP2	2	170038133	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1935586	170038133	73161240	247	67102											
FASTKD1	79675	broad.mit.edu	37	chr2	170425786	170425786	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aataaaaaagaaagaatcctCcatacataatcattttaaaa	2	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170425786	G	G	170425786	1	3	60	0	1	0	0	0	0	0	0	0	5742	870	30	4		4	FASTKD1	2	170425786	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	387653	170425786	72773587	248	67103											
UBR3	130507	broad.mit.edu	37	chr2	170917828	170917828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcttttttaactttagGttaaccctattgcttggtct	5	7	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170917828	T	T	170917828	3	4	60	1	0	0	0	0	1	0	0	0	17029	1275	44	3	5032	3	UBR3	2	170917828	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	492042	170917828	72281545	249	67104											
HOXD10	3236	broad.mit.edu	37	chr2	176981711	176981711	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacctatggaatgcaaacCtgtggactgctcccgtctct	11	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176981711	A	A	176981711	2	1	60	1	0	0	0	0	0	0	0	1	7386	668	24	2		2	HOXD10	2	176981711	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6063883	176981711	66217662	250	67105											
TTN	7273	broad.mit.edu	37	chr2	179416929	179416929	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagccttgatttcatcaaatCgaatgggtcctttgggcttt	9	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179416929	T	T	179416929	3	4	60	1	0	0	0	0	1	0	0	0	16861	884	31	4	17393	4	TTN	2	179416929	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2435218	179416929	63782444	251	67106											
TTN	7273	broad.mit.edu	37	chr2	179429386	179429386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattctgacactttgctaGgcttgccaatgccaacaata	7	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179429386	T	T	179429386	3	4	60	1	0	0	0	0	1	0	0	0	16861	1000	35	2	26654	2	TTN	2	179429386	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	12457	179429386	63769987	252	67107											
TTN	7273	broad.mit.edu	37	chr2	179443597	179443597	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctacaccatatttattttcGgcactgaccctgaaggtata	6	11	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179443597	A	A	179443597	2	1	60	1	0	0	0	0	0	0	0	1	16861	1103	39	4		4	TTN	2	179443597	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	14211	179443597	63755776	253	67108											
TTN	7273	broad.mit.edu	37	chr2	179463770	179463770	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgctgctaactgttggtttAtctggtgctccagggacagc	12	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179463770	T	T	179463770	3	4	60	1	0	0	0	0	1	0	0	0	16861	446	16	5	51314	5	TTN	2	179463770	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	20173	179463770	63735603	254	67109											
TTN	7273	broad.mit.edu	37	chr2	179472431	179472431	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctgttgaaagagaacagtCatgcattagcccatgaaaga	9	8	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179472431	A	A	179472431	1	1	60	0	1	0	0	0	0	0	0	0	16861	841	29	3		3	TTN	2	179472431	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	8661	179472431	63726942	255	67110											
TTN	7273	broad.mit.edu	37	chr2	179495957	179495957	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgctttgctaatttcacaCtgtagaataacttcatcttt	4	9	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179495957	G	G	179495957	3	3	60	1	0	0	0	0	1	0	0	0	16861	564	20	4	64379	4	TTN	2	179495957	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	23526	179495957	63703416	256	67111											
NCKAP1	10787	broad.mit.edu	37	chr2	183817573	183817573	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaattcattttctgtaggTaagttcacaaacgctttcat	6	7	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183817573	A	A	183817573	3	1	60	1	0	0	0	0	1	0	0	0	10316	1635	57	5	975	5	NCKAP1	2	183817573	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4321616	183817573	59381800	257	67112											
DUSP19	142679	broad.mit.edu	37	chr2	183943810	183943810	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaagtagagccgagcaGtgggggtggttgtggttatg	20	3	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183943810	A	A	183943810	3	1	60	1	0	0	0	0	1	0	0	0	4858	1029	36	4	151	4	DUSP19	2	183943810	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	126237	183943810	59255563	258	67113											
ZSWIM2	151112	broad.mit.edu	37	chr2	187693380	187693380	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgatagatgaatgatgtcTctgtttgaaacagactgatg	10	4	1	7			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187693380	G	G	187693380	3	3	60	1	0	0	0	0	1	0	0	0	18370	1548	54	5	672	5	ZSWIM2	2	187693380	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3749570	187693380	55505993	259	67114											
COL5A2	1290	broad.mit.edu	37	chr2	189903892	189903892	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatgtttactatttttatcTcaaatctatcactaagtaga	3	6	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189903892	A	A	189903892	1	1	60	0	1	0	0	0	0	0	0	0	3729	1566	54	5		5	COL5A2	2	189903892	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2210512	189903892	53295481	260	67115											
WDR75	84128	broad.mit.edu	37	chr2	190328594	190328594	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggagtatcttcactggtttGatgattgatccaagaactaa	9	6	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190328594	C	C	190328594	3	2	60	1	0	0	0	0	1	0	0	0	17452	1281	45	4	1062	4	WDR75	2	190328594	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	424702	190328594	52870779	261	67116											
SLC40A1	30061	broad.mit.edu	37	chr2	190428407	190428407	+	Frame_Shift_Del	DEL	C	-	-													acaatattagcagaattagaCccattagacatgtatatttc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	190428407	-	-	190428407	7	5	60	1	0	1	0	1	0	0	0	0	14742	494	18	0	418	0	SLC40A1	2	190428407	Frame_Shift_Del	DEL	C	TCGA-17-Z030-01A-01W-0746-08	99813	190428407	52770966	262	67117											
STAT1	6772	broad.mit.edu	37	chr2	191855977	191855977	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacttcacagtgaactggacCcctgtcttcaagaccagcgg	9	13	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191855977	G	G	191855977	2	3	60	1	0	0	0	0	0	0	0	1	15382	610	22	4		4	STAT1	2	191855977	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1427570	191855977	51343396	263	67118											
SDPR	8436	broad.mit.edu	37	chr2	192711169	192711169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcatagggggaactgacCtggaagatgagcactttgaa	15	6	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192711169	A	A	192711169	3	1	60	1	0	0	0	0	1	0	0	0	14083	695	24	2	802	2	SDPR	2	192711169	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	855192	192711169	50488204	264	67119											
DNAH7	56171	broad.mit.edu	37	chr2	196729163	196729163	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacatcttccagaaaagactCttctttaatttgagtatctg	6	8	4	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196729163	A	A	196729163	4	1	60	1	0	0	0	0	0	1	0	0	4646	922	32	3	4958	3	DNAH7	2	196729163	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4017994	196729163	46470210	265	67120											
DNAH7	56171	broad.mit.edu	37	chr2	196788436	196788436	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtaccacaagtgctccCagagttacgcgattctgcat	8	13	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196788436	A	A	196788436	2	1	60	1	0	0	0	0	0	0	0	1	4646	581	21	2		2	DNAH7	2	196788436	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	59273	196788436	46410937	266	67121											
AOX1	316	broad.mit.edu	37	chr2	201468861	201468861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcctagaagaattcatGgtgaaatatcaggaagggta	10	6	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201468861	T	T	201468861	1	4	60	0	1	0	0	0	0	0	0	0	731	1363	47	2		2	AOX1	2	201468861	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4680425	201468861	41730512	267	67122											
NRP2	8828	broad.mit.edu	37	chr2	206590917	206590917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaataaacacagcataCctgagaactccattcattca	4	10	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206590917	A	A	206590917	1	1	60	0	1	0	0	0	0	0	0	0	10756	522	18	3		3	NRP2	2	206590917	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5122056	206590917	36608456	268	67123											
CPS1	1373	broad.mit.edu	37	chr2	211421527	211421527	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttggctttaccaatgtgActgcacaccaaaaatggaaa	8	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211421527	G	G	211421527	3	3	60	1	0	0	0	0	1	0	0	0	3855	275	10	5	94	5	CPS1	2	211421527	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	4830610	211421527	31777846	269	67124											
CPS1	1373	broad.mit.edu	37	chr2	211460275	211460275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctggagaatttgattActcaggatctcaagctgtaa	10	7	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211460275	T	T	211460275	3	4	60	1	0	0	0	0	1	0	0	0	3855	391	14	5	1400	5	CPS1	2	211460275	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	38748	211460275	31739098	270	67125											
SPAG16	79582	broad.mit.edu	37	chr2	214794721	214794721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaagtggtgacactacaGttaaattatgggatctatgt	9	6	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214794721	T	T	214794721	3	4	60	1	0	0	0	0	1	0	0	0	15094	1029	36	3	1314	3	SPAG16	2	214794721	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3334446	214794721	28404652	271	67126											
SPAG16	79582	broad.mit.edu	37	chr2	214878902	214878902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaagtgattgtgcaagGgcattcagggcaaaagaaca	11	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214878902	T	T	214878902	1	4	60	0	1	0	0	0	0	0	0	0	15094	1247	43	2		2	SPAG16	2	214878902	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	84181	214878902	28320471	272	67127											
BARD1	580	broad.mit.edu	37	chr2	215595145	215595145	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaaaaataccagctgttctCtgttgagcctgcttctgcgt	9	10	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215595145	G	G	215595145	3	3	60	1	0	0	0	0	1	0	0	0	1317	913	32	4	350	4	BARD1	2	215595145	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	716243	215595145	27604228	273	67128											
BARD1	580	broad.mit.edu	37	chr2	215610419	215610419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttaacattttttctaccCcacctcccaaaattcaaaat	0	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215610419	A	A	215610419	1	1	60	0	1	0	0	0	0	0	0	0	1317	638	22	2		2	BARD1	2	215610419	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	15274	215610419	27588954	274	67129											
SMARCAL1	50485	broad.mit.edu	37	chr2	217281150	217281150	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgaaagctttcagggcAccccccccaacactccttcc	8	17	1	1	rs138448911	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	217281150	C	C	217281150	1	2	60	0	1	0	0	0	0	0	0	0	14887	174	6	5		5	SMARCAL1	2	217281150	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1670731	217281150	25918223	275	67130											
CXCR1	3577	broad.mit.edu	37	chr2	219028726	219028726	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagaaggttggtgtggCccctgaagacaccagttcct	11	12	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219028726	A	A	219028726	1	1	60	0	1	0	0	0	0	0	0	0	4123	754	26	3		3	CXCR1	2	219028726	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1747576	219028726	24170647	276	67131											
VIL1	7429	broad.mit.edu	37	chr2	219288980	219288980	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtccagggcagcccctctGaccctctttctctccttagg	9	16	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219288980	T	T	219288980	1	4	60	0	1	0	0	0	0	0	0	0	17291	1305	45	3		3	VIL1	2	219288980	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	260254	219288980	23910393	277	67132											
STK36	27148	broad.mit.edu	37	chr2	219562167	219562167	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgcctgttccattgggtctCcatttttggtgttaccaggc	10	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219562167	A	A	219562167	1	1	60	0	1	0	0	0	0	0	0	0	15420	870	30	3		3	STK36	2	219562167	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	273187	219562167	23637206	278	67133											
CCDC108	255101	broad.mit.edu	37	chr2	219883952	219883952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggatggggccagggcagGgccctcccagggatggctgg	21	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219883952	T	T	219883952	1	4	60	0	1	0	0	0	0	0	0	0	2769	1247	43	2		2	CCDC108	2	219883952	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	321785	219883952	23315421	279	67134											
DNPEP	23549	broad.mit.edu	37	chr2	220250828	220250828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggtagggcactgcagcCagccaggccaggtcagccca	14	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220250828	A	A	220250828	1	1	60	0	1	0	0	0	0	0	0	0	4719	609	21	2		2	DNPEP	2	220250828	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	366876	220250828	22948545	280	67135											
SPEG	10290	broad.mit.edu	37	chr2	220326530	220326530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcaactcctgggctctgGgcgacattccagccagctct	11	16	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220326530	T	T	220326530	1	4	60	0	1	0	0	0	0	0	0	0	15154	1247	43	2		2	SPEG	2	220326530	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	75702	220326530	22872843	281	67136											
PAX3	5077	broad.mit.edu	37	chr2	223096823	223096823	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgggcctcggtgagcttcgCcctctgggccagttcctccc	12	17	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223096823	G	G	223096823	3	3	60	1	0	0	0	0	1	0	0	0	11574	739	26	4	803	4	PAX3	2	223096823	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2770293	223096823	20102550	282	67137											
ACSL3	2181	broad.mit.edu	37	chr2	223797991	223797991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagataacatttgtgcatatGcaaacaggtaagaacgtgga	10	5	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223797991	T	T	223797991	3	4	60	1	0	0	0	0	1	0	0	0	178	1319	46	3	1886	3	ACSL3	2	223797991	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	701168	223797991	19401382	283	67138											
SCG2	7857	broad.mit.edu	37	chr2	224462916	224462916	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatctcaattaagtcttctGggggtatctgtaaattcctt	8	8	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224462916	A	A	224462916	3	1	60	1	0	0	0	0	1	0	0	0	14003	1348	47	4	772	4	SCG2	2	224462916	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	664925	224462916	18736457	284	67139											
DOCK10	55619	broad.mit.edu	37	chr2	225637952	225637952	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtgcaaagctgattaagCtcagaaaccttcttggacat	8	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225637952	T	T	225637952	2	4	60	1	0	0	0	0	0	0	0	1	4725	796	28	4		4	DOCK10	2	225637952	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1175036	225637952	17561421	285	67140											
DOCK10	55619	broad.mit.edu	37	chr2	225702446	225702446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtcacacagcacaaggGgatatgagcaatttccaaga	9	9	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225702446	T	T	225702446	1	4	60	0	1	0	0	0	0	0	0	0	4725	1247	43	2		2	DOCK10	2	225702446	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	64494	225702446	17496927	286	67141											
RHBDD1	84236	broad.mit.edu	37	chr2	227778956	227778956	+	Frame_Shift_Del	DEL	G	-	-													atcaggattattatccgcatGgcaggccagatcactatgaa							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	227778956	-	-	227778956	7	5	60	1	0	1	0	1	0	0	0	0	13425	1348	47	0	763	0	RHBDD1	2	227778956	Frame_Shift_Del	DEL	G	TCGA-17-Z030-01A-01W-0746-08	2076510	227778956	15420417	287	67142											
SP110	3431	broad.mit.edu	37	chr2	231037615	231037615	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaagactcgtggacaagTaccgcagcagagaagttgtc	13	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231037615	A	A	231037615	3	1	60	1	0	0	0	0	1	0	0	0	15075	1638	57	5	510	5	SP110	2	231037615	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3258659	231037615	12161758	288	67143											
SP140	11262	broad.mit.edu	37	chr2	231112563	231112563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcactacaatctccatcatGctcactaatctagtgaaatt	3	11	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231112563	T	T	231112563	1	4	60	0	1	0	0	0	0	0	0	0	15076	1334	46	3		3	SP140	2	231112563	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	74948	231112563	12086810	289	67144											
SP140	11262	broad.mit.edu	37	chr2	231177523	231177523	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggggcttttctctgagCctccttcatctgcccaaaga	11	12	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231177523	A	A	231177523	1	1	60	0	1	0	0	0	0	0	0	0	15076	754	26	3		3	SP140	2	231177523	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	64960	231177523	12021850	290	67145											
PTMA	5757	broad.mit.edu	37	chr2	232577107	232577107	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgggatttccccaggagccAcagtaggagggaagtgtggt	16	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232577107	C	C	232577107	1	2	60	0	1	0	0	0	0	0	0	0	12872	174	6	5		5	PTMA	2	232577107	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1399584	232577107	10622266	291	67146											
ALPI	248	broad.mit.edu	37	chr2	233322032	233322032	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctccaacatggacattgaCgtgcgacccccgggccaagg	11	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233322032	T	T	233322032	2	4	60	1	0	0	0	0	0	0	0	1	543	550	19	4		4	ALPI	2	233322032	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	744925	233322032	9877341	292	67147											
AGAP1	116987	broad.mit.edu	37	chr2	236708124	236708124	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccactgccaacacgcccacGcccgttcgcaagcagtctaa	7	19	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236708124	A	A	236708124	2	1	60	1	0	0	0	0	0	0	0	1	366	1074	38	4		4	AGAP1	2	236708124	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3386092	236708124	6491249	293	67148											
GBX2	2637	broad.mit.edu	37	chr2	237074746	237074746	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttcacctgcacctcgctGagtttgagggcgtgggcgat	13	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237074746	T	T	237074746	2	4	60	1	0	0	0	0	0	0	0	1	6343	1277	45	3		3	GBX2	2	237074746	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	366622	237074746	6124627	294	67149											
IQCA1	79781	broad.mit.edu	37	chr2	237253618	237253618	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccctctggggtgtgcagaGccctggttgtaaatgcgctt	13	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237253618	A	A	237253618	1	1	60	0	1	0	0	0	0	0	0	0	7872	986	34	4		4	IQCA1	2	237253618	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	178872	237253618	5945755	295	67150											
COPS8	10920	broad.mit.edu	37	chr2	238005469	238005469	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttgaatttagttgcAggggccctggatgtttcctt	10	6	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238005469	T	T	238005469	2	4	60	1	0	0	0	0	0	0	0	1	3772	175	7	5		5	COPS8	2	238005469	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	751851	238005469	5193904	296	67151											
OTOS	150677	broad.mit.edu	37	chr2	241078847	241078847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccatcctcagaggtctcaAggcaagtggatggttcccag	11	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241078847	T	T	241078847	1	4	60	0	1	0	0	0	0	0	0	0	11403	87	3	5		5	OTOS	2	241078847	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3073378	241078847	2120526	297	67152											
AGXT	189	broad.mit.edu	37	chr2	241814461	241814461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgaaacaggacagccagCgagactgccctggccttcag	12	14	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241814461	A	A	241814461	1	1	60	0	1	0	0	0	0	0	0	0	404	783	27	3		3	AGXT	2	241814461	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	735614	241814461	1384912	298	67153											
PASK	23178	broad.mit.edu	37	chr2	242065750	242065750	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccttggctcctctgctgaTgggcacgtgtcctcagggcc	13	14	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242065750	C	C	242065750	2	2	60	1	0	0	0	0	0	0	0	1	11566	1451	51	5		5	PASK	2	242065750	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	251289	242065750	1133623	299	67154											
ANO7	50636	broad.mit.edu	37	chr2	242130440	242130440	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacagcagaggggcttcccCctccaccccctacccacccg	7	22	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242130440	T	T	242130440	1	4	60	0	1	0	0	0	0	0	0	0	702	638	22	4		4	ANO7	2	242130440	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	64690	242130440	1068933	300	67155											
GRIP2	80852	broad.mit.edu	37	chr3	14553013	14553013	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaagaggccatgaatctGaccttggtggcctcagcctg	12	10	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14553013	T	T	14553013	1	4	60	0	1	0	0	0	0	0	0	0	6854	1305	45	3		3	GRIP2	3	14553013	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08		14553013	183469417	301	67156											
SATB1	6304	broad.mit.edu	37	chr3	18427808	18427808	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataaatctatgtatctatcTatctaatttcttattgagat	3	5	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18427808	A	A	18427808	1	1	60	0	1	0	0	0	0	0	0	0	13965	1537	53	5		5	SATB1	3	18427808	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3874795	18427808	179594622	302	67157											
KCNH8	131096	broad.mit.edu	37	chr3	19491721	19491721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccgtgtccatcacttgcCccaacaactcaagcagagga	7	15	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19491721	A	A	19491721	3	1	60	1	0	0	0	0	1	0	0	0	8108	623	22	2	1533	2	KCNH8	3	19491721	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1063913	19491721	178530709	303	67158											
KCNH8	131096	broad.mit.edu	37	chr3	19498354	19498354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacctactgtgatctccaGtgtatcatcctcaaaggact	6	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19498354	T	T	19498354	3	4	60	1	0	0	0	0	1	0	0	0	8108	1020	36	3	1962	3	KCNH8	3	19498354	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6633	19498354	178524076	304	67159											
RARB	5915	broad.mit.edu	37	chr3	25611171	25611171	+	Intron	DEL	G	-	-													aatgagcttaaggcagccttGggaggtggaacctcccagct							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25611171	-	-	25611171	6	5	60	0	1	1	0	1	0	0	0	0	13161	1363	47	0		0	RARB	3	25611171	Intron	DEL	G	TCGA-17-Z030-01A-01W-0746-08	6112817	25611171	172411259	305	67160											
SLC4A7	9497	broad.mit.edu	37	chr3	27444931	27444931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggaatagtatttgtacCtaaaatttttcattgcaagc	7	5	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27444931	T	T	27444931	1	4	60	0	1	0	0	0	0	0	0	0	14772	696	24	4		4	SLC4A7	3	27444931	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1833760	27444931	170577499	306	67161											
ARPP21	10777	broad.mit.edu	37	chr3	35725261	35725261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcgcagccttgctgtctGtgaggaatcttctgccagac	11	12	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35725261	T	T	35725261	3	4	60	1	0	0	0	0	1	0	0	0	982	1377	48	3	225	3	ARPP21	3	35725261	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8280330	35725261	162297169	307	67162											
ARPP21	10777	broad.mit.edu	37	chr3	35780931	35780931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccacagccggcccagcaGcccagctatgtaatcgcctc	9	17	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35780931	T	T	35780931	3	4	60	1	0	0	0	0	1	0	0	0	982	962	34	3	1838	3	ARPP21	3	35780931	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	55670	35780931	162241499	308	67163											
SCN5A	6331	broad.mit.edu	37	chr3	38598637	38598637	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttgtgggctgggctttcaGatgcagacactgattccctg	12	11	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38598637	A	A	38598637	1	1	60	0	1	0	0	0	0	0	0	0	14035	957	33	4		4	SCN5A	3	38598637	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2817706	38598637	159423793	309	67164											
TRAK1	22906	broad.mit.edu	37	chr3	42229535	42229535	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcctgctctgcttgtgcAggtgtctcagctccggcatg	14	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42229535	T	T	42229535	5	4	60	1	0	0	0	0	0	0	1	0	16573	202	7	5	613	5	TRAK1	3	42229535	Splice_Site	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3630898	42229535	155792895	310	67165											
TRAK1	22906	broad.mit.edu	37	chr3	42251330	42251330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcctggacccccggcccGgtgtggtcaccaagggcttc	13	16	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42251330	T	T	42251330	3	4	60	1	0	0	0	0	1	0	0	0	16573	1116	39	1	1986	1	TRAK1	3	42251330	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	21795	42251330	155771100	311	67166											
ZNF502	91392	broad.mit.edu	37	chr3	44751540	44751540	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtatgtacttgtgcactgGgcgggggatcaaccccttct	12	10	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44751540	T	T	44751540	1	4	60	0	1	0	0	0	0	0	0	0	18077	1247	43	2		2	ZNF502	3	44751540	5'Flank	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2500210	44751540	153270890	312	67167											
ZNF502	91392	broad.mit.edu	37	chr3	44762981	44762981	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacatttcgatgtcgatcAtttcttactcagcatcaaag	5	9	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44762981	T	T	44762981	2	4	60	1	0	0	0	0	0	0	0	1	18077	204	8	5		5	ZNF502	3	44762981	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	11441	44762981	153259449	313	67168											
CCR2	729230	broad.mit.edu	37	chr3	46401148	46401148	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttgccactcccctcaCtcttctcttttccccacagc	3	21	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46401148	G	G	46401148	1	3	60	0	1	0	0	0	0	0	0	0	2971	580	20	4		4	CCR2	3	46401148	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1638167	46401148	151621282	314	67169											
ZNF589	51385	broad.mit.edu	37	chr3	48310756	48310756	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaggacacacacaggagaAaagccttatgtctgcggaga	12	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48310756	G	G	48310756	1	3	60	0	1	0	0	0	0	0	0	0	18148	29	1	5		5	ZNF589	3	48310756	3'UTR	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1909608	48310756	149711674	315	67170											
DNAH1	25981	broad.mit.edu	37	chr3	52392594	52392594	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctattccaggaggacctGgagatcacgcacatgtactc	10	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52392594	T	T	52392594	2	4	60	1	0	0	0	0	0	0	0	1	4637	1335	47	2		2	DNAH1	3	52392594	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4081838	52392594	145629836	316	67171											
MAGI1	9223	broad.mit.edu	37	chr3	65342808	65342808	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggcggtcgctgctggggtCtgccaggaaaataaacgaga	16	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65342808	G	G	65342808	1	3	60	0	1	0	0	0	0	0	0	0	9282	927	32	4		4	MAGI1	3	65342808	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	12950214	65342808	132679622	317	67172											
CNTN3	5067	broad.mit.edu	37	chr3	74334799	74334799	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgctgcattaggctgtgTgtcacagcagtgaagataga	14	6	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74334799	C	C	74334799	1	2	60	0	1	0	0	0	0	0	0	0	3674	1711	59	5		5	CNTN3	3	74334799	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	8991991	74334799	123687631	318	67173											
CADM2	253559	broad.mit.edu	37	chr3	86063859	86063859	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atacaccggaggaacaccatGctgacatgtgtagaagtgac	11	9	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86063859	C	C	86063859	1	2	60	0	1	0	0	0	0	0	0	0	2593	1334	46	4		4	CADM2	3	86063859	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	11729060	86063859	111958571	319	67174											
CHMP2B	25978	broad.mit.edu	37	chr3	87303014	87303014	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttacttataattatgtaGtataaaccaagcacagtgca	6	7	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87303014	A	A	87303014	1	1	60	0	1	0	0	0	0	0	0	0	3386	1044	36	4		4	CHMP2B	3	87303014	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1239155	87303014	110719416	320	67175											
EPHA6	285220	broad.mit.edu	37	chr3	96996377	96996377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatatgatggcttagcttGggctcagaggcctgacagat	15	7	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96996377	T	T	96996377	1	4	60	0	1	0	0	0	0	0	0	0	5213	1363	47	2		2	EPHA6	3	96996377	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	9693363	96996377	101026053	321	67176											
OR5H1	26341	broad.mit.edu	37	chr3	97852075	97852075	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatagtacatcacatttaCtgtgacactatcccattgtc	4	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852075	A	A	97852075	4	1	60	1	0	0	0	0	0	1	0	0	11253	576	20	3	536	3	OR5H1	3	97852075	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	855698	97852075	100170355	322	67177											
OR5H15	403274	broad.mit.edu	37	chr3	97887663	97887663	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatatctcatcaccatcatGgggaatcttggtctgattgc	8	9	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97887663	A	A	97887663	3	1	60	1	0	0	0	0	1	0	0	0	11255	1348	47	4	122	4	OR5H15	3	97887663	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	35588	97887663	100134767	323	67178											
TMEM45A	55076	broad.mit.edu	37	chr3	100295667	100295667	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttttgggttgccttccccAgttgcccaaataatctagac	7	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100295667	T	T	100295667	1	4	60	0	1	0	0	0	0	0	0	0	16292	203	7	5		5	TMEM45A	3	100295667	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2408004	100295667	97726763	324	67179											
ABI3BP	25890	broad.mit.edu	37	chr3	100489475	100489475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaaaactgctagttttGtctcctccccaggtatgctt	8	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100489475	T	T	100489475	1	4	60	0	1	0	0	0	0	0	0	0	91	1392	48	3		3	ABI3BP	3	100489475	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	193808	100489475	97532955	325	67180											
ABI3BP	25890	broad.mit.edu	37	chr3	100557248	100557248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaaagtaatgattaccaGgctgaatttgaggtgcatct	10	5	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100557248	T	T	100557248	1	4	60	0	1	0	0	0	0	0	0	0	91	1015	35	2		2	ABI3BP	3	100557248	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	67773	100557248	97465182	326	67181											
ABI3BP	25890	broad.mit.edu	37	chr3	100567509	100567509	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaaattcctagcctcaagtGatcctcctgccttggcctcc	6	16	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100567509	C	C	100567509	1	2	60	0	1	0	0	0	0	0	0	0	91	1305	45	4		4	ABI3BP	3	100567509	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	10261	100567509	97454921	327	67182											
ABI3BP	25890	broad.mit.edu	37	chr3	100657875	100657875	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaggcaaatcctttctaaaTttaaagttcttatattccaa	3	7	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100657875	A	A	100657875	1	1	60	0	1	0	0	0	0	0	0	0	91	1508	52	5		5	ABI3BP	3	100657875	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	90366	100657875	97364555	328	67183											
MYH15	22989	broad.mit.edu	37	chr3	108158555	108158555	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgtatatgtagacagataGataactaaccagatacaccg	8	7	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108158555	T	T	108158555	1	4	60	0	1	0	0	0	0	0	0	0	10128	957	33	3		3	MYH15	3	108158555	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7500680	108158555	89863875	329	67184											
MYH15	22989	broad.mit.edu	37	chr3	108179230	108179230	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagctagcaaaaaaaaaaAaagaaaaagatgaaaacatg	6	3	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108179230	C	C	108179230	1	2	60	0	1	0	0	0	0	0	0	0	10128	29	1	5		5	MYH15	3	108179230	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	20675	108179230	89843200	330	67185											
MYH15	22989	broad.mit.edu	37	chr3	108212237	108212237	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaccagctaatatctggaGgaagccagaatgattgtcag	11	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108212237	A	A	108212237	1	1	60	0	1	0	0	0	0	0	0	0	10128	1015	35	4		4	MYH15	3	108212237	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	33007	108212237	89810193	331	67186											
MORC1	27136	broad.mit.edu	37	chr3	108819465	108819465	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcaggacaaacccatagctCttgggtcagcccagagacaa	9	12	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108819465	G	G	108819465	1	3	60	0	1	0	0	0	0	0	0	0	9795	928	32	4		4	MORC1	3	108819465	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	607228	108819465	89202965	332	67187											
TMPRSS7	344805	broad.mit.edu	37	chr3	111794162	111794162	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcacatgccctttctccaCcaaagcctgcagcaggagtt	7	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111794162	T	T	111794162	1	4	60	0	1	0	0	0	0	0	0	0	16375	522	18	4		4	TMPRSS7	3	111794162	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2974697	111794162	86228268	333	67188											
DRD3	1814	broad.mit.edu	37	chr3	113874679	113874679	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctccctcttcacaaagCgaaccctctcccattctctg	4	17	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113874679	G	G	113874679	1	3	60	0	1	0	0	0	0	0	0	0	4798	783	27	4		4	DRD3	3	113874679	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2080517	113874679	84147751	334	67189											
LSAMP	4045	broad.mit.edu	37	chr3	115738401	115738401	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaggtgataacaggttcagGacggccattggccatgcaga	13	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115738401	C	C	115738401	3	2	60	1	0	0	0	0	1	0	0	0	9135	1174	41	4	561	4	LSAMP	3	115738401	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1863722	115738401	82284029	335	67190											
UPK1B	7348	broad.mit.edu	37	chr3	118906753	118906753	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcggcatatttgtgggcatCtgcctcttctgcctgtctgt	10	11	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118906753	G	G	118906753	3	3	60	1	0	0	0	0	1	0	0	0	17134	903	32	4	207	4	UPK1B	3	118906753	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3168352	118906753	79115677	336	67191											
B4GALT4	8702	broad.mit.edu	37	chr3	118937520	118937520	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtctgaggtcatcgtcttcGcctccccatccccagtagtt	8	15	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118937520	A	A	118937520	2	1	60	1	0	0	0	0	0	0	0	1	1278	1074	38	4		4	B4GALT4	3	118937520	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	30767	118937520	79084910	337	67192											
STXBP5L	9515	broad.mit.edu	37	chr3	120673790	120673790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgctctctttcagacaGttcggcatggttttcctcat	7	10	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120673790	T	T	120673790	3	4	60	1	0	0	0	0	1	0	0	0	15475	1029	36	3	199	3	STXBP5L	3	120673790	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1736270	120673790	77348640	338	67193											
POLQ	10721	broad.mit.edu	37	chr3	121228644	121228644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttccatgctaaccctccCggctgataaattttacaaat	5	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121228644	A	A	121228644	1	1	60	0	1	0	0	0	0	0	0	0	12303	667	23	1		1	POLQ	3	121228644	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	554854	121228644	76793786	339	67194											
IQCB1	9657	broad.mit.edu	37	chr3	121536733	121536733	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagacaagagagctccctctCcctctccacacaaacacaag	6	16	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121536733	A	A	121536733	1	1	60	0	1	0	0	0	0	0	0	0	7873	870	30	3		3	IQCB1	3	121536733	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	308089	121536733	76485697	340	67195											
HSPBAP1	79663	broad.mit.edu	37	chr3	122471632	122471632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaatacaaatgaattcaCaataatattgctggagaaaa	7	4	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122471632	A	A	122471632	1	1	60	0	1	0	0	0	0	0	0	0	7495	493	17	3		3	HSPBAP1	3	122471632	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	934899	122471632	75550798	341	67196											
SEMA5B	54437	broad.mit.edu	37	chr3	122646650	122646650	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttaccattaagccacttGgagttatattgggcagtgcg	10	9	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122646650	T	T	122646650	2	4	60	1	0	0	0	0	0	0	0	1	14151	1335	47	2		2	SEMA5B	3	122646650	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	175018	122646650	75375780	342	67197											
KALRN	8997	broad.mit.edu	37	chr3	124378443	124378443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgtgggaggggtggtagGgacgtgggaacttttatctg	18	4	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124378443	A	A	124378443	1	1	60	0	1	0	0	0	0	0	0	0	8045	1247	43	4		4	KALRN	3	124378443	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1731793	124378443	73643987	343	67198											
KALRN	8997	broad.mit.edu	37	chr3	124438261	124438261	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcaccagaatgatgtgCggcctattcccaatgtcaag	10	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124438261	A	A	124438261	2	1	60	1	0	0	0	0	0	0	0	1	8045	759	27	3		3	KALRN	3	124438261	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	59818	124438261	73584169	344	67199											
ITGB5	3693	broad.mit.edu	37	chr3	124538577	124538577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactagcctccctccctcCcagcataccttgtacagcat	4	18	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124538577	A	A	124538577	1	1	60	0	1	0	0	0	0	0	0	0	7968	638	22	2		2	ITGB5	3	124538577	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	100316	124538577	73483853	345	67200											
UROC1	131669	broad.mit.edu	37	chr3	126216852	126216852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggaggcagaagctttgGgggggccacccacccatggg	16	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126216852	T	T	126216852	1	4	60	0	1	0	0	0	0	0	0	0	17154	1247	43	2		2	UROC1	3	126216852	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1678275	126216852	71805578	346	67201											
PLXND1	23129	broad.mit.edu	37	chr3	129285420	129285420	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcctgggagctgccctGggagttgagggtctgggagg	20	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129285420	A	A	129285420	4	1	60	1	0	0	0	0	0	1	0	0	12222	1357	47	4	1692	4	PLXND1	3	129285420	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3068568	129285420	68737010	347	67202											
COL6A6	131873	broad.mit.edu	37	chr3	130311915	130311915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttttcagggagaagttgGggaaaatggaattgacggat	14	3	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130311915	T	T	130311915	3	4	60	1	0	0	0	0	1	0	0	0	3735	1232	43	2	4440	2	COL6A6	3	130311915	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1026495	130311915	67710515	348	67203											
CPNE4	131034	broad.mit.edu	37	chr3	131388535	131388535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctttagccggcggtctGggtctccgctgcatagagaa	13	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131388535	T	T	131388535	3	4	60	1	0	0	0	0	1	0	0	0	3846	1348	47	2	1048	2	CPNE4	3	131388535	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1076620	131388535	66633895	349	67204											
CCRL1	51554	broad.mit.edu	37	chr3	132320151	132320151	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaacccaatcctttatGtttttatgggagcatctttc	6	11	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132320151	A	A	132320151	3	1	60	1	0	0	0	0	1	0	0	0	2979	1377	48	4	912	4	CCRL1	3	132320151	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	931616	132320151	65702279	350	67205											
TF	7018	broad.mit.edu	37	chr3	133475542	133475542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagcgagtcattctcccGcatgttctctggccttcagt	9	13	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133475542	T	T	133475542	1	4	60	0	1	0	0	0	0	0	0	0	15908	1102	38	3		3	TF	3	133475542	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1155391	133475542	64546888	351	67206											
STAG1	10274	broad.mit.edu	37	chr3	136456019	136456019	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacctcactgtagaaggtCataaatgctgcctccgccac	7	14	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136456019	A	A	136456019	1	1	60	0	1	0	0	0	0	0	0	0	15360	841	29	3		3	STAG1	3	136456019	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2980477	136456019	61566411	352	67207											
ARMC8	25852	broad.mit.edu	37	chr3	137953878	137953878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcttttttcttacagggGccagatcatcaaacaatttt	5	8	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137953878	T	T	137953878	2	4	60	1	0	0	0	0	0	0	0	1	961	1190	42	3		3	ARMC8	3	137953878	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1497859	137953878	60068552	353	67208											
TXNDC6	347736	broad.mit.edu	37	chr3	138023736	138023736	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctggctgctccctcctgGccacattggggtcacggggg	14	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138023736	C	C	138023736	3	2	60	1	0	0	0	0	1	0	0	0	16926	1203	42	4	216	4	TXNDC6	3	138023736	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	69858	138023736	59998694	354	67209											
SLC9A9	285195	broad.mit.edu	37	chr3	143567222	143567222	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gataaaggctattttatcaaGatttgcctaagacagtctga	8	6	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143567222	A	A	143567222	1	1	60	0	1	0	0	0	0	0	0	0	14835	957	33	4		4	SLC9A9	3	143567222	5'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5543486	143567222	54455208	355	67210											
ZIC4	84107	broad.mit.edu	37	chr3	147113617	147113617	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccagagggtccgcacgcgAcagacagcgccgaatactga	12	15	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147113617	T	T	147113617	1	4	60	0	1	0	0	0	0	0	0	0	17807	290	10	5		5	ZIC4	3	147113617	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3546395	147113617	50908813	356	67211											
ZIC4	84107	broad.mit.edu	37	chr3	147114052	147114052	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtagccatgcagggctgcgGcagctgccagggcgtcgctg	17	13	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147114052	A	A	147114052	3	1	60	1	0	0	0	0	1	0	0	0	17807	1203	42	4	741	4	ZIC4	3	147114052	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	435	147114052	50908378	357	67212											
AADACL2	344752	broad.mit.edu	37	chr3	151474780	151474780	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattaccatatattttcagGtgcagaatgatgctgaaata	7	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151474780	A	A	151474780	3	1	60	1	0	0	0	0	1	0	0	0	11	1275	44	4	622	4	AADACL2	3	151474780	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4360728	151474780	46547650	358	67213											
GMPS	8833	broad.mit.edu	37	chr3	155611337	155611337	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggagaccttaaggatGgccaccaccactatgaagga	12	10	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155611337	C	C	155611337	3	2	60	1	0	0	0	0	1	0	0	0	6562	1348	47	4	64	4	GMPS	3	155611337	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4136557	155611337	42411093	359	67214											
KCNAB1	7881	broad.mit.edu	37	chr3	156234078	156234078	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttggcgcaatgacatgGtctccacttgcctgtggaat	13	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156234078	C	C	156234078	3	2	60	1	0	0	0	0	1	0	0	0	8079	1270	44	4	1398	4	KCNAB1	3	156234078	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	622741	156234078	41788352	360	67215											
SERPINI2	5276	broad.mit.edu	37	chr3	167189325	167189325	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttctaatattaaaaaatGaatgcgtccatatcttatcc	3	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167189325	T	T	167189325	1	4	60	0	1	0	0	0	0	0	0	0	14232	1305	45	3		3	SERPINI2	3	167189325	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	10955247	167189325	30833105	361	67216											
SLC7A14	57709	broad.mit.edu	37	chr3	170216429	170216430	+	Intron	DEL	CA	-	-													aaggcagagtgtgtgacaggCacaccaggtgtttggaacaa							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170216430	-	-	170216429	6	5	60	0	1	1	0	1	0	0	0	0	14810	725	25	0		0	SLC7A14	3	170216429	Intron	DEL	CA	TCGA-17-Z030-01A-01W-0746-08	3027104	170216429	27806001	362	67217											
NAALADL2	254827	broad.mit.edu	37	chr3	174777303	174777303	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatcagaactagtttagagGagccctagactaagccgtct	9	11	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174777303	A	A	174777303	1	1	60	0	1	0	0	0	0	0	0	0	10224	1189	41	4		4	NAALADL2	3	174777303	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4560874	174777303	23245127	363	67218											
NAALADL2	254827	broad.mit.edu	37	chr3	175189490	175189490	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccacagtcccataaggGggaactctagtctgtatcct	9	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175189490	T	T	175189490	3	4	60	1	0	0	0	0	1	0	0	0	10224	1232	43	2	1631	2	NAALADL2	3	175189490	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	412187	175189490	22832940	364	67219											
KCNMB2	10242	broad.mit.edu	37	chr3	178525238	178525238	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccggacctcttcatcttataGacatgatgaaaaaaggtaaa	7	8	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178525238	A	A	178525238	3	1	60	1	0	0	0	0	1	0	0	0	8145	942	33	4	43	4	KCNMB2	3	178525238	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3335748	178525238	19497192	365	67220											
KCNMB3	27094	broad.mit.edu	37	chr3	178978031	178978031	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctcaaggggagttctggtCctgtcatctggtgcacccat	13	11	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178978031	A	A	178978031	1	1	60	0	1	0	0	0	0	0	0	0	8146	870	30	3		3	KCNMB3	3	178978031	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	452793	178978031	19044399	366	67221											
USP13	8975	broad.mit.edu	37	chr3	179483594	179483594	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaatgcaaacattatttctGaggccaagcccgaaggacct	8	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179483594	T	T	179483594	4	4	60	1	0	0	0	0	0	1	0	0	17170	1291	45	3	2445	3	USP13	3	179483594	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	505563	179483594	18538836	367	67222											
MCF2L2	23101	broad.mit.edu	37	chr3	182910837	182910837	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttccttgctagtggtagctCtttccatatttttaatccat	5	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182910837	A	A	182910837	3	1	60	1	0	0	0	0	1	0	0	0	9473	913	32	3	394	3	MCF2L2	3	182910837	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3427243	182910837	15111593	368	67223											
KLHL24	54800	broad.mit.edu	37	chr3	183396891	183396891	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggaaaactgtggtatgtcTgtgtgtaatggtaaaatata	11	3	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183396891	A	A	183396891	2	1	60	1	0	0	0	0	0	0	0	1	8450	1567	55	5		5	KLHL24	3	183396891	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	486054	183396891	14625539	369	67224											
YEATS2	55689	broad.mit.edu	37	chr3	183432968	183432968	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcatgtctggaatcaagcgAaccatcaaagaaaccgaccc	7	12	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183432968	T	T	183432968	2	4	60	1	0	0	0	0	0	0	0	1	17599	233	9	5		5	YEATS2	3	183432968	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	36077	183432968	14589462	370	67225											
ABCC5	10057	broad.mit.edu	37	chr3	183689445	183689445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcttcgggactgggcCgctcgtcactgtccaggagg	13	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183689445	A	A	183689445	3	1	60	1	0	0	0	0	1	0	0	0	56	652	23	1	2726	1	ABCC5	3	183689445	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	256477	183689445	14332985	371	67226											
ABCF3	55324	broad.mit.edu	37	chr3	183905813	183905813	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggttggctttctttttctaAttagaggacaatttggagag	12	4	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183905813	T	T	183905813	1	4	60	0	1	0	0	0	0	0	0	0	67	116	4	5		5	ABCF3	3	183905813	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	216368	183905813	14116617	372	67227											
THPO	7066	broad.mit.edu	37	chr3	184090955	184090955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgagctgtggtcctgccCtgtggaggaagctgagggca	17	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184090955	A	A	184090955	3	1	60	1	0	0	0	0	1	0	0	0	15995	695	24	2	657	2	THPO	3	184090955	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	185142	184090955	13931475	373	67228											
EPHB3	2049	broad.mit.edu	37	chr3	184297667	184297667	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggtcaccaaaagtcggcCagttatgatcctcactgagt	10	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184297667	T	T	184297667	3	4	60	1	0	0	0	0	1	0	0	0	5218	594	21	4	2159	4	EPHB3	3	184297667	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	206712	184297667	13724763	374	67229											
KNG1	3827	broad.mit.edu	37	chr3	186460062	186460062	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcagttagtgaaattaAtccaaccacacaaatgaaag	7	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186460062	G	G	186460062	3	3	60	1	0	0	0	0	1	0	0	0	8498	101	4	5	1915	5	KNG1	3	186460062	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2162395	186460062	11562368	375	67230											
CCDC50	152137	broad.mit.edu	37	chr3	191098603	191098603	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagttaatgatattgacTgtattttgtttaggaaatcg	9	4	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191098603	A	A	191098603	1	1	60	0	1	0	0	0	0	0	0	0	2848	1595	55	5		5	CCDC50	3	191098603	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4638541	191098603	6923827	376	67231											
FGF12	2257	broad.mit.edu	37	chr3	191861776	191861776	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggaagggatgagagagGgaagaaggggagagttctca	20	2	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191861776	T	T	191861776	1	4	60	0	1	0	0	0	0	0	0	0	5898	1247	43	2		2	FGF12	3	191861776	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	763173	191861776	6160654	377	67232											
OPA1	4976	broad.mit.edu	37	chr3	193382645	193382645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaatatacagtaactctGggctttcttttttctcattt	6	7	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193382645	T	T	193382645	1	4	60	0	1	0	0	0	0	0	0	0	10965	1363	47	2		2	OPA1	3	193382645	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1520869	193382645	4639785	378	67233											
LRRC15	131578	broad.mit.edu	37	chr3	194080144	194080144	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacaatgccaattacaatGgcggcaatggccagcccgct	11	13	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194080144	T	T	194080144	2	4	60	1	0	0	0	0	0	0	0	1	9057	1335	47	2		2	LRRC15	3	194080144	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	697499	194080144	3942286	379	67234											
ATP13A3	79572	broad.mit.edu	37	chr3	194162107	194162107	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcactccttcaatttttgtaAgtgaatgacaagtagccata	7	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194162107	T	T	194162107	3	4	60	1	0	0	0	0	1	0	0	0	1129	72	3	5	2109	5	ATP13A3	3	194162107	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	81963	194162107	3860323	380	67235											
TMEM44	93109	broad.mit.edu	37	chr3	194313775	194313775	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgatcgtccatacctgctCcgagtttagggcctcccaat	8	14	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194313775	A	A	194313775	1	1	60	0	1	0	0	0	0	0	0	0	16291	864	30	3		3	TMEM44	3	194313775	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	151668	194313775	3708655	381	67236											
MUC4	4585	broad.mit.edu	37	chr3	195485923	195485923	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtgtagcaatgcagaaTttcccaaatttgactctgac	9	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195485923	A	A	195485923	1	1	60	0	1	0	0	0	0	0	0	0	10072	1508	52	5		5	MUC4	3	195485923	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1172148	195485923	2536507	382	67237											
ZNF595	152687	broad.mit.edu	37	chr4	67948	67948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtattttagtagagacGgggtttcactgagttagcca	11	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67948	T	T	67948	1	4	60	0	1	0	0	0	0	0	0	0	18152	1131	39	1		1	ZNF595	4	67948	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08		67948	191086328	383	67238											
LYAR	55646	broad.mit.edu	37	chr4	4283554	4283554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgcctttgtgggttttacCttcatagcctttgccaccat	8	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4283554	A	A	4283554	3	1	60	1	0	0	0	0	1	0	0	0	9191	681	24	2	974	2	LYAR	4	4283554	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4215606	4283554	186870722	384	67239											
GPR125	166647	broad.mit.edu	37	chr4	22414753	22414753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatttgagcttaattatgCatagcaaaaatgtagaatag	7	4	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22414753	A	A	22414753	1	1	60	0	1	0	0	0	0	0	0	0	6704	725	25	3		3	GPR125	4	22414753	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	18131199	22414753	168739523	385	67240											
GBA3	57733	broad.mit.edu	37	chr4	22749030	22749030	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttagaagaccaaggaggttGgttgtcagaggcaatcattg	13	5	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22749030	C	C	22749030	3	2	60	1	0	0	0	0	1	0	0	0	6330	1357	47	4	408	4	GBA3	4	22749030	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	334277	22749030	168405246	386	67241											
CCDC149	91050	broad.mit.edu	37	chr4	24845699	24845699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgagaagccttctctgCacattatcactagaggcatt	7	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24845699	A	A	24845699	1	1	60	0	1	0	0	0	0	0	0	0	2809	725	25	3		3	CCDC149	4	24845699	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2096669	24845699	166308577	387	67242											
TLR10	81793	broad.mit.edu	37	chr4	38777082	38777082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctggggtcaagtctgCgggaacctttcttagagaca	14	8	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38777082	A	A	38777082	3	1	60	1	0	0	0	0	1	0	0	0	16073	768	27	3	2309	3	TLR10	4	38777082	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	13931383	38777082	152377194	388	67243											
KLB	152831	broad.mit.edu	37	chr4	39436088	39436088	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctgaagcagagaagcatGagatgagaggcacagctgat	13	7	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39436088	T	T	39436088	4	4	60	1	0	0	0	0	0	1	0	0	8403	1291	45	3	1090	3	KLB	4	39436088	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	659006	39436088	151718188	389	67244											
UCHL1	7345	broad.mit.edu	37	chr4	41270006	41270006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatttctcctttccaggaCgctgccaaggtctgcagaga	10	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41270006	A	A	41270006	3	1	60	1	0	0	0	0	1	0	0	0	17046	535	19	3	622	3	UCHL1	4	41270006	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1833918	41270006	149884270	390	67245											
LIMCH1	22998	broad.mit.edu	37	chr4	41496510	41496510	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgattggacttcttgattaAaaaagaaaaacttatgtgct	7	4	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41496510	G	G	41496510	1	3	60	0	1	0	0	0	0	0	0	0	8869	29	1	5		5	LIMCH1	4	41496510	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	226504	41496510	149657766	391	67246											
ATP10D	57205	broad.mit.edu	37	chr4	47582619	47582619	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaggttgattattaactgActaaattataatctccccaa	4	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47582619	G	G	47582619	1	3	60	0	1	0	0	0	0	0	0	0	1122	290	10	5		5	ATP10D	4	47582619	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	6086109	47582619	143571657	392	67247											
FRYL	285527	broad.mit.edu	37	chr4	48607768	48607768	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatacttacagcagctacaGggataagaatctccacaaat	6	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48607768	A	A	48607768	3	1	60	1	0	0	0	0	1	0	0	0	6124	1000	35	4	8433	4	FRYL	4	48607768	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1025149	48607768	142546508	393	67248											
LRRC66	339977	broad.mit.edu	37	chr4	52864180	52864180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaatgagttacagaaaaCtactgtttatgtctctatgg	7	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52864180	A	A	52864180	1	1	60	0	1	0	0	0	0	0	0	0	9105	580	20	3		3	LRRC66	4	52864180	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4256412	52864180	138290096	394	67249											
SCFD2	152579	broad.mit.edu	37	chr4	54179819	54179819	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacccatactcatcttgatTggcaggttttctctgcttgc	7	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54179819	A	A	54179819	2	1	60	1	0	0	0	0	0	0	0	1	14002	1799	63	5		5	SCFD2	4	54179819	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1315639	54179819	136974457	395	67250											
PDGFRA	5156	broad.mit.edu	37	chr4	55153526	55153526	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagagcccaaggggaacccTtttctatttccactgctgtg	9	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55153526	A	A	55153526	1	1	60	0	1	0	0	0	0	0	0	0	11755	1624	56	5		5	PDGFRA	4	55153526	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	973707	55153526	136000750	396	67251											
UGT2B15	7366	broad.mit.edu	37	chr4	69535947	69535947	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttcttattcaaaactgcAtctttacagagcttgttact	5	8	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69535947	G	G	69535947	2	3	60	1	0	0	0	0	0	0	0	1	17084	214	8	5		5	UGT2B15	4	69535947	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	14382421	69535947	121618329	397	67252											
ENAM	10117	broad.mit.edu	37	chr4	71508303	71508304	+	Frame_Shift_Ins	INS	-	A	A													aaagcttaccctcctacttcINSaagaggcaattatcccaatt							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71508304	A	A	71508303	7	5	60	1	0	1	1	0	0	0	0	0	5154	838	29	0	1190	0	ENAM	4	71508303	Frame_Shift_Ins	INS	-	TCGA-17-Z030-01A-01W-0746-08	1972356	71508303	119645973	398	67253											
ANKRD17	26057	broad.mit.edu	37	chr4	73964157	73964157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttaccatgagaacctgCcaaagttgtccaggttgcag	9	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73964157	A	A	73964157	3	1	60	1	0	0	0	0	1	0	0	0	646	739	26	3	3193	3	ANKRD17	4	73964157	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2455854	73964157	117190119	399	67254											
ANKRD17	26057	broad.mit.edu	37	chr4	74039883	74039883	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacagatccctgatgaacaTagatgcaaaaatcctcaaca	5	11	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74039883	C	C	74039883	1	2	60	0	1	0	0	0	0	0	0	0	646	1421	49	5		5	ANKRD17	4	74039883	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	75726	74039883	117114393	400	67255											
FRAS1	80144	broad.mit.edu	37	chr4	79430250	79430250	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataatcaaattccttatggtCcatgcatggcatttggaata	7	7	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79430250	G	G	79430250	1	3	60	0	1	0	0	0	0	0	0	0	6102	870	30	4		4	FRAS1	4	79430250	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5390367	79430250	111724026	401	67256											
ENOPH1	58478	broad.mit.edu	37	chr4	83375948	83375948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtacatctattcctcaGggagtgtggaggcacagaaa	13	7	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83375948	T	T	83375948	3	4	60	1	0	0	0	0	1	0	0	0	5166	1000	35	2	477	2	ENOPH1	4	83375948	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3945698	83375948	107778328	402	67257											
AFF1	4299	broad.mit.edu	37	chr4	87968000	87968000	+	Frame_Shift_Del	DEL	A	-	-													aatatcctttaattcctgacAaagggagcagcattccatcc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87968000	-	-	87968000	7	5	60	1	0	1	0	1	0	0	0	0	356	131	5	0	344	0	AFF1	4	87968000	Frame_Shift_Del	DEL	A	TCGA-17-Z030-01A-01W-0746-08	4592052	87968000	103186276	403	67258											
PIGY	84992	broad.mit.edu	37	chr4	89442811	89442811	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaataggcaagagcaggcTgtaaaagcaaaggctggctg	15	6	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89442811	A	A	89442811	1	1	60	0	1	0	0	0	0	0	0	0	11999	1580	55	5		5	PIGY	4	89442811	3'UTR	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1474811	89442811	101711465	404	67259											
GRID2	2895	broad.mit.edu	37	chr4	94454477	94454477	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttccttccttctttcctttCttcctttctttcttgccctc	1	17	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94454477	A	A	94454477	1	1	60	0	1	0	0	0	0	0	0	0	6838	928	32	3		3	GRID2	4	94454477	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5011666	94454477	96699799	405	67260											
BMPR1B	658	broad.mit.edu	37	chr4	96052579	96052579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaaccagcaattgcccatcGagatctgaaaagtaaaaaca	6	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96052579	A	A	96052579	3	1	60	1	0	0	0	0	1	0	0	0	1476	1058	37	4	1018	4	BMPR1B	4	96052579	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1598102	96052579	95101697	406	67261											
UNC5C	8633	broad.mit.edu	37	chr4	96171478	96171478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaggaggttgaggctagaGtgagctacggtcatgccatt	14	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96171478	T	T	96171478	1	4	60	0	1	0	0	0	0	0	0	0	17119	1044	36	3		3	UNC5C	4	96171478	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	118899	96171478	94982798	407	67262											
C4orf17	84103	broad.mit.edu	37	chr4	100451129	100451129	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaaagtaagtatcaggtTtatcaaatccataacttgga	6	5	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100451129	A	A	100451129	1	1	60	0	1	0	0	0	0	0	0	0	2275	1856	64	5		5	C4orf17	4	100451129	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4279651	100451129	90703147	408	67263											
SLC39A8	64116	broad.mit.edu	37	chr4	103236956	103236956	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtagcatttgaaaagccaTgaagggaaaagatctcttca	11	6	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103236956	C	C	103236956	3	2	60	1	0	0	0	0	1	0	0	0	14738	1464	51	5	1236	5	SLC39A8	4	103236956	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2785827	103236956	87917320	409	67264											
AGXT2L1	64850	broad.mit.edu	37	chr4	109674008	109674008	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaacagttttaatcccttTtataaaagatgttgagatgt	6	7	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109674008	A	A	109674008	1	1	60	0	1	0	0	0	0	0	0	0	406	1856	64	5		5	AGXT2L1	4	109674008	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	6437052	109674008	81480268	410	67265											
GAR1	54433	broad.mit.edu	37	chr4	110745573	110745573	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaattttctcttaatcaGggagaggacattaagtgaaa	8	5	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110745573	T	T	110745573	5	4	60	1	0	0	0	0	0	0	1	0	6302	1014	35	2	662	2	GAR1	4	110745573	Splice_Site	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1071565	110745573	80408703	411	67266											
ELOVL6	79071	broad.mit.edu	37	chr4	111119297	111119297	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgatcagctggctgcccgCgattcatcgctccattcacg	10	15	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111119297	T	T	111119297	1	4	60	0	1	0	0	0	0	0	0	0	5120	783	27	4		4	ELOVL6	4	111119297	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	373724	111119297	80034979	412	67267											
ANK2	287	broad.mit.edu	37	chr4	114199126	114199126	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgttataattatgtaacaGtgaaggtgatagattaggag	11	2	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114199126	A	A	114199126	1	1	60	0	1	0	0	0	0	0	0	0	621	1044	36	4		4	ANK2	4	114199126	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3079829	114199126	76955150	413	67268											
ANK2	287	broad.mit.edu	37	chr4	114294557	114294557	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaggggatggctattcCaaagttataaagcgtgttgt	14	4	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114294557	A	A	114294557	2	1	60	1	0	0	0	0	0	0	0	1	621	581	21	2		2	ANK2	4	114294557	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	95431	114294557	76859719	414	67269											
PDE5A	8654	broad.mit.edu	37	chr4	120527900	120527900	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttcaagggctcaccaagCgctgccacatgtcccacaat	8	14	2	0	rs148467877		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120527900	A	A	120527900	2	1	60	1	0	0	0	0	0	0	0	1	11738	755	27	3		3	PDE5A	4	120527900	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6233343	120527900	70626376	415	67270											
NUDT6	11162	broad.mit.edu	37	chr4	123814263	123814263	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttaggcggcagatgataTacatatctgacttcccaaaa	8	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123814263	G	G	123814263	3	3	60	1	0	0	0	0	1	0	0	0	10838	1406	49	5	283	5	NUDT6	4	123814263	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3286363	123814263	67340013	416	67271											
FAT4	79633	broad.mit.edu	37	chr4	126370417	126370417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaaatcatcagacaaagGgtccccgtctcagagtactt	7	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126370417	T	T	126370417	3	4	60	1	0	0	0	0	1	0	0	0	5749	1232	43	2	8280	2	FAT4	4	126370417	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2556154	126370417	64783859	417	67272											
PCDH18	54510	broad.mit.edu	37	chr4	138452072	138452072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaactatttctccattcaGcccagaatccttgtcctgaa	4	13	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138452072	T	T	138452072	3	4	60	1	0	0	0	0	1	0	0	0	11607	962	34	3	2252	3	PCDH18	4	138452072	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	12081655	138452072	52702204	418	67273											
UCP1	7350	broad.mit.edu	37	chr4	141489083	141489083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcggtgattgttcccaGgacacctttatacctaataa	7	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141489083	T	T	141489083	3	4	60	1	0	0	0	0	1	0	0	0	17056	991	35	2	766	2	UCP1	4	141489083	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3037011	141489083	49665193	419	67274											
TBC1D9	23158	broad.mit.edu	37	chr4	141600073	141600073	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcatttctaaagtctggaaGatacaaggtctctatcaccc	6	11	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141600073	A	A	141600073	1	1	60	0	1	0	0	0	0	0	0	0	15749	957	33	4		4	TBC1D9	4	141600073	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	110990	141600073	49554203	420	67275											
IL15	3600	broad.mit.edu	37	chr4	142650999	142650999	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttataacttttatttttaGcccagttgcaaagtaacagc	5	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142650999	T	T	142650999	5	4	60	1	0	0	0	0	0	0	1	0	7701	985	34	3	258	3	IL15	4	142650999	Splice_Site	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1050926	142650999	48503277	421	67276											
INPP4B	8821	broad.mit.edu	37	chr4	143067139	143067139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcttccccacattggccCacaccctgtcctgaaaaaag	7	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143067139	A	A	143067139	3	1	60	1	0	0	0	0	1	0	0	0	7823	595	21	2	1236	2	INPP4B	4	143067139	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	416140	143067139	48087137	422	67277											
ZNF827	152485	broad.mit.edu	37	chr4	146791340	146791340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccatgcaggaagcagtcCagttggcctgcaagtgaaac	11	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146791340	A	A	146791340	1	1	60	0	1	0	0	0	0	0	0	0	18309	609	21	2		2	ZNF827	4	146791340	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3724201	146791340	44362936	423	67278											
DCLK2	166614	broad.mit.edu	37	chr4	151154061	151154061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaataatggcattttatAgtctataccaatcctacatt	4	8	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151154061	T	T	151154061	1	4	60	0	1	0	0	0	0	0	0	0	4325	435	15	5		5	DCLK2	4	151154061	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	4362721	151154061	40000215	424	67279											
DCHS2	54798	broad.mit.edu	37	chr4	155287806	155287806	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatatatacacacacacacaGacacacacacacacaaacac	1	15	0	1	rs148346473	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155287806	C	C	155287806	1	2	60	0	1	0	0	0	0	0	0	0	4321	957	33	4		4	DCHS2	4	155287806	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4133745	155287806	35866470	425	67280											
FSTL5	56884	broad.mit.edu	37	chr4	162307360	162307360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagagacatatggagtgcCcgtcacatcactattgaacc	10	10	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162307360	A	A	162307360	3	1	60	1	0	0	0	0	1	0	0	0	6140	623	22	2	464	2	FSTL5	4	162307360	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7019554	162307360	28846916	426	67281											
FSTL5	56884	broad.mit.edu	37	chr4	162697113	162697113	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atccaccaatagcttcttccGagatatgtcgtcgccattag	7	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162697113	A	A	162697113	3	1	60	1	0	0	0	0	1	0	0	0	6140	1057	37	4	2068	4	FSTL5	4	162697113	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	389753	162697113	28457163	427	67282											
ANP32C	23520	broad.mit.edu	37	chr4	165118764	165118764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatctgtgagggcttcgaGtttgccttcattcgaccgac	10	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165118764	T	T	165118764	3	4	60	1	0	0	0	0	1	0	0	0	707	1029	36	3	607	3	ANP32C	4	165118764	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2421651	165118764	26035512	428	67283											
DDX60L	91351	broad.mit.edu	37	chr4	169336818	169336818	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataagcttaccaagtctaacTtcatatgattgatttttata	4	6	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169336818	A	A	169336818	3	1	60	1	0	0	0	0	1	0	0	0	4412	1606	56	5	2333	5	DDX60L	4	169336818	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4218054	169336818	21817458	429	67284											
DDX60L	91351	broad.mit.edu	37	chr4	169351700	169351700	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtcacaatgactttcgTagagattgattctaacgatt	8	6	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169351700	A	A	169351700	3	1	60	1	0	0	0	0	1	0	0	0	4412	1638	57	5	3618	5	DDX60L	4	169351700	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	14882	169351700	21802576	430	67285											
MFAP3L	9848	broad.mit.edu	37	chr4	170913132	170913132	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttggcggaggtgatgatGgggatgcgcttggcgatctc	18	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170913132	A	A	170913132	2	1	60	1	0	0	0	0	0	0	0	1	9609	1335	47	4		4	MFAP3L	4	170913132	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1561432	170913132	20241144	431	67286											
MORF4	10934	broad.mit.edu	37	chr4	174537782	174537782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgtcttctttcctggggCagcccatctcatcttcccct	7	15	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174537782	A	A	174537782	3	1	60	1	0	0	0	0	1	0	0	0	9799	710	25	3	697	3	MORF4	4	174537782	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3624650	174537782	16616494	432	67287											
ADAM29	11086	broad.mit.edu	37	chr4	175898174	175898174	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctatgaaaagagctgtcatGaccgcaatgaacagtgtagg	12	7	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175898174	T	T	175898174	3	4	60	1	0	0	0	0	1	0	0	0	247	1290	45	3	1500	3	ADAM29	4	175898174	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1360392	175898174	15256102	433	67288											
WDR17	116966	broad.mit.edu	37	chr4	177050046	177050046	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcaaaattttaatttttaAaaaatattgtgttttctatc	2	3	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177050046	C	C	177050046	1	2	60	0	1	0	0	0	0	0	0	0	17404	29	1	5		5	WDR17	4	177050046	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1151872	177050046	14104230	434	67289											
WDR17	116966	broad.mit.edu	37	chr4	177063245	177063245	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggttttttttcctgaaatAaataataactacattttgga	6	4	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177063245	T	T	177063245	1	4	60	0	1	0	0	0	0	0	0	0	17404	377	13	5		5	WDR17	4	177063245	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	13199	177063245	14091031	435	67290											
ADCY2	108	broad.mit.edu	37	chr5	7724739	7724739	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaagaggtaagttttttTcttcttcaaaatcatcaatc	5	6	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7724739	C	C	7724739	1	2	60	0	1	0	0	0	0	0	0	0	294	1798	62	5		5	ADCY2	5	7724739	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08		7724739	173190521	436	67291											
ADCY2	108	broad.mit.edu	37	chr5	7789844	7789844	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatggagaacctgaaccgCgtgctgctggagaacgtgct	13	11	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7789844	A	A	7789844	2	1	60	1	0	0	0	0	0	0	0	1	294	755	27	3		3	ADCY2	5	7789844	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	65105	7789844	173125416	437	67292											
FASTKD3	79072	broad.mit.edu	37	chr5	7867304	7867304	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagggcagtgagcattTggctaatcaatttaggactc	10	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7867304	G	G	7867304	3	3	60	1	0	0	0	0	1	0	0	0	5744	1812	63	5	1119	5	FASTKD3	5	7867304	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	77460	7867304	173047956	438	67293											
SEMA5A	9037	broad.mit.edu	37	chr5	9051937	9051937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaatcattttctctctcCatgttggaaatgattttatt	5	6	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9051937	A	A	9051937	1	1	60	0	1	0	0	0	0	0	0	0	14150	609	21	2		2	SEMA5A	5	9051937	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1184633	9051937	171863323	439	67294											
SEMA5A	9037	broad.mit.edu	37	chr5	9202068	9202068	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attatttcaagttacatacaCattggtggtaaagatgccat	7	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9202068	T	T	9202068	3	4	60	1	0	0	0	0	1	0	0	0	14150	492	17	4	2353	4	SEMA5A	5	9202068	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	150131	9202068	171713192	440	67295											
SEMA5A	9037	broad.mit.edu	37	chr5	9443461	9443461	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaaagcagagagaggggaGaggggaggaagagcaaaaga	19	2	0	6			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9443461	T	T	9443461	1	4	60	0	1	0	0	0	0	0	0	0	14150	957	33	3		3	SEMA5A	5	9443461	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	241393	9443461	171471799	441	67296											
CTNND2	1501	broad.mit.edu	37	chr5	11833519	11833519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgattctatttatatgaCattcggaaaaaggcaaaatt	7	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11833519	A	A	11833519	1	1	60	0	1	0	0	0	0	0	0	0	4054	493	17	3		3	CTNND2	5	11833519	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2390058	11833519	169081741	442	67297											
TRIO	7204	broad.mit.edu	37	chr5	14507326	14507326	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggaggttctggaagctgTccggtacctgcacaactgca	15	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14507326	A	A	14507326	3	1	60	1	0	0	0	0	1	0	0	0	16677	1667	58	5	8930	5	TRIO	5	14507326	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2673807	14507326	166407934	443	67298											
MYO10	4651	broad.mit.edu	37	chr5	16670539	16670539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttgagagagcaaaatgCtccatcttgtcttctctcca	9	10	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16670539	A	A	16670539	1	1	60	0	1	0	0	0	0	0	0	0	10156	812	28	3		3	MYO10	5	16670539	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2163213	16670539	164244721	444	67299											
CDH18	1016	broad.mit.edu	37	chr5	19473591	19473591	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacatctatgctttccaggGtggatgatgtctggtgtctg	13	7	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19473591	A	A	19473591	3	1	60	1	0	0	0	0	1	0	0	0	3133	1261	44	4	259	4	CDH18	5	19473591	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2803052	19473591	161441669	445	67300											
CDH18	1016	broad.mit.edu	37	chr5	19591206	19591206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctctggtctctttgtcaGtggagattgagaatattccc	9	9	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19591206	T	T	19591206	3	4	60	1	0	0	0	0	1	0	0	0	3133	1029	36	3	1441	3	CDH18	5	19591206	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	117615	19591206	161324054	446	67301											
CDH18	1016	broad.mit.edu	37	chr5	19839135	19839135	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagttttccttcctttcCttgtcagctacgaaagctta	5	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19839135	A	A	19839135	1	1	60	1	0	0	0	0	0	0	0	0	3133	696	24	2		2	CDH18	5	19839135	Translation_Start_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	247929	19839135	161076125	447	67302											
CDH12	1010	broad.mit.edu	37	chr5	21802586	21802586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatatagaatgtggcagaaaTggtgaacattacttcagagc	10	5	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21802586	C	C	21802586	1	2	60	0	1	0	0	0	0	0	0	0	3128	1479	51	5		5	CDH12	5	21802586	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1963451	21802586	159112674	448	67303											
CDH12	1010	broad.mit.edu	37	chr5	21817109	21817109	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctgtgacgatgtcaaacAaatttcccccatctcctgga	6	13	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21817109	T	T	21817109	4	4	60	1	0	0	0	0	0	1	0	0	3128	131	5	5	1465	5	CDH12	5	21817109	Nonsense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	14523	21817109	159098151	449	67304											
CDH12	1010	broad.mit.edu	37	chr5	22078649	22078649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacacgttggaaatgtgacCgttgtcctggcagatggata	12	7	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078649	A	A	22078649	3	1	60	1	0	0	0	0	1	0	0	0	3128	652	23	1	2291	1	CDH12	5	22078649	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	261540	22078649	158836611	450	67305											
PRDM9	56979	broad.mit.edu	37	chr5	23509638	23509638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagaatgggcagagatGggagactgggagaaaactcg	17	4	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509638	A	A	23509638	3	1	60	1	0	0	0	0	1	0	0	0	12569	1348	47	4	135	4	PRDM9	5	23509638	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1430989	23509638	157405622	451	67306											
RNASEN	29102	broad.mit.edu	37	chr5	31511805	31511806	+	Intron	INS	-	A	A													gacatagagagacctcatctINSaaaaaaaaaaaaacagaaaa					rs111259754		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31511806	A	A	31511805	6	5	60	0	1	1	1	0	0	0	0	0	13528	1537	53	0		0	RNASEN	5	31511805	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	8002167	31511805	149403455	452	67307											
PDZD2	23037	broad.mit.edu	37	chr5	31700411	31700411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcaggagggaggagagaCagaggtggaggctgaggagg	24	3	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31700411	A	A	31700411	1	1	60	0	1	0	0	0	0	0	0	0	11795	493	17	3		3	PDZD2	5	31700411	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	188606	31700411	149214849	453	67308											
NPR3	4883	broad.mit.edu	37	chr5	32786464	32786464	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcttaaaggaagccccccActttttttttttctgcctga	6	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32786464	C	C	32786464	1	2	60	0	1	0	0	0	0	0	0	0	10691	174	6	5		5	NPR3	5	32786464	3'UTR	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1086053	32786464	148128796	454	67309											
CAPSL	133690	broad.mit.edu	37	chr5	35904652	35904652	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggtcatgtgcttaaaGcttccaggcggttctcatca	9	13	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35904652	A	A	35904652	3	1	60	1	0	0	0	0	1	0	0	0	2665	971	34	4	8	4	CAPSL	5	35904652	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3118188	35904652	145010608	455	67310											
SLC1A3	6507	broad.mit.edu	37	chr5	36679861	36679861	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttactcattcacgcagtcatCgtcttgccactcctctactt	4	15	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36679861	A	A	36679861	2	1	60	1	0	0	0	0	0	0	0	1	14546	874	31	3		3	SLC1A3	5	36679861	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	775209	36679861	144235399	456	67311											
EGFLAM	133584	broad.mit.edu	37	chr5	38406350	38406350	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcctttgaggaggtaacaAtaatctctgctcttaaaacc	6	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38406350	G	G	38406350	1	3	60	0	1	0	0	0	0	0	0	0	5006	116	4	5		5	EGFLAM	5	38406350	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1726489	38406350	142508910	457	67312											
OSMR	9180	broad.mit.edu	37	chr5	38885471	38885471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtacttgaggagcccaagGacttttcttgtgaaaccgag	11	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38885471	T	T	38885471	3	4	60	1	0	0	0	0	1	0	0	0	11386	1174	41	3	742	3	OSMR	5	38885471	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	479121	38885471	142029789	458	67313											
FYB	2533	broad.mit.edu	37	chr5	39169727	39169727	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggccgaggcgggtggattAcctgaggtcaggagttcgag	19	7	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39169727	T	T	39169727	1	4	60	0	1	0	0	0	0	0	0	0	6184	406	14	5		5	FYB	5	39169727	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	284256	39169727	141745533	459	67314											
C7	730	broad.mit.edu	37	chr5	40958161	40958161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttatatgagctggtaaaGgaagtaccttgtgcctctgt	10	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40958161	T	T	40958161	3	4	60	1	0	0	0	0	1	0	0	0	2400	991	35	2	1329	2	C7	5	40958161	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1788434	40958161	139957099	460	67315											
GHR	2690	broad.mit.edu	37	chr5	42628974	42628974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggggaggtatatccaacCtgccttcccattgtggccag	11	11	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42628974	A	A	42628974	1	1	60	0	1	0	0	0	0	0	0	0	6435	696	24	2		2	GHR	5	42628974	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1670813	42628974	138286286	461	67316											
HMGCS1	3157	broad.mit.edu	37	chr5	43298642	43298642	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccaagagctggactcaatCcagttaacagcattgaagac	8	11	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43298642	T	T	43298642	4	4	60	1	0	0	0	0	0	1	0	0	7299	856	30	4	1172	4	HMGCS1	5	43298642	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	669668	43298642	137616618	462	67317											
HMGCS1	3157	broad.mit.edu	37	chr5	43299016	43299016	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctcaagggcaacaattcCcacatcttttggccagcaag	8	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43299016	A	A	43299016	4	1	60	1	0	0	0	0	0	1	0	0	7299	632	22	2	1546	2	HMGCS1	5	43299016	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	374	43299016	137616244	463	67318											
HCN1	348980	broad.mit.edu	37	chr5	45262890	45262890	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatccttctggaacttttgCagaagaattgaatttttctt	7	6	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45262890	A	A	45262890	2	1	60	1	0	0	0	0	0	0	0	1	7062	697	25	3		3	HCN1	5	45262890	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1963874	45262890	135652370	464	67319											
ISL1	3670	broad.mit.edu	37	chr5	50679354	50679354	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactcctagatccgcgagGgcgcggcgcagccgagcagc	16	14	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50679354	T	T	50679354	1	4	60	0	1	0	0	0	0	0	0	0	7926	1247	43	2		2	ISL1	5	50679354	5'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5416464	50679354	130235906	465	67320											
SKIV2L2	23517	broad.mit.edu	37	chr5	54639331	54639331	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaatattcaaaatgttacaGattagtcttgctttactctc	4	8	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54639331	T	T	54639331	1	4	60	0	1	0	0	0	0	0	0	0	14473	957	33	3		3	SKIV2L2	5	54639331	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3959977	54639331	126275929	466	67321											
SKIV2L2	23517	broad.mit.edu	37	chr5	54645457	54645457	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgcaattgattgcttatccGatgaagataaaaaactccct	6	8	0	3	rs144334570		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54645457	A	A	54645457	3	1	60	1	0	0	0	0	1	0	0	0	14473	1058	37	4	1343	4	SKIV2L2	5	54645457	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6126	54645457	126269803	467	67322											
C5orf43	643155	broad.mit.edu	37	chr5	60455740	60455740	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgtgtaattttccaaatGattttcctctggttgcaaag	8	7	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60455740	T	T	60455740	1	4	60	0	1	0	0	0	0	0	0	0	2325	1305	45	3		3	C5orf43	5	60455740	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5810283	60455740	120459520	468	67323											
HTR1A	3350	broad.mit.edu	37	chr5	63256398	63256398	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagcccagccaattgattatGgcgcccaacagggtgggcat	12	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63256398	C	C	63256398	2	2	60	1	0	0	0	0	0	0	0	1	7506	1335	47	4		4	HTR1A	5	63256398	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2800658	63256398	117658862	469	67324											
MAP1B	4131	broad.mit.edu	37	chr5	71482763	71482763	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgccaaaagaatttagagcActcatttacaattaattgga	6	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71482763	T	T	71482763	1	4	60	0	1	0	0	0	0	0	0	0	9320	174	6	5		5	MAP1B	5	71482763	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	8226365	71482763	109432497	470	67325											
WDR41	55255	broad.mit.edu	37	chr5	76728893	76728893	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtgatcaatatattaatGgttttcagagtagtacccga	8	5	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76728893	T	T	76728893	1	4	60	0	1	0	0	0	0	0	0	0	17421	1363	47	2		2	WDR41	5	76728893	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5246130	76728893	104186367	471	67326											
RASGRF2	5924	broad.mit.edu	37	chr5	80376118	80376118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctaaactgtttgcatcacCctgttgacctgtgagcttct	8	12	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80376118	A	A	80376118	1	1	60	0	1	0	0	0	0	0	0	0	13181	638	22	2		2	RASGRF2	5	80376118	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3647225	80376118	100539142	472	67327											
GPR98	84059	broad.mit.edu	37	chr5	89990056	89990056	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtagcatctctttttagtGgtcaggctgtggctgggagt	16	6	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89990056	C	C	89990056	3	2	60	1	0	0	0	0	1	0	0	0	6787	1348	47	4	7613	4	GPR98	5	89990056	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	9613938	89990056	90925204	473	67328											
GPR98	84059	broad.mit.edu	37	chr5	90074220	90074220	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattccacagattctactgtTgatgactctttgtctttttc	5	9	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90074220	A	A	90074220	1	1	60	0	1	0	0	0	0	0	0	0	6787	1827	63	5		5	GPR98	5	90074220	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	84164	90074220	90841040	474	67329											
MCTP1	79772	broad.mit.edu	37	chr5	94417212	94417212	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attagaaatgaacaaaacatCtttcactccagtgagagaac	6	8	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94417212	T	T	94417212	1	4	60	0	1	0	0	0	0	0	0	0	9493	928	32	4		4	MCTP1	5	94417212	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4342992	94417212	86498048	475	67330											
SLCO6A1	133482	broad.mit.edu	37	chr5	101795359	101795359	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattacattttatagtcaCctggcatattgtttggaaag	7	5	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101795359	A	A	101795359	5	1	60	1	0	0	0	0	0	0	1	0	14846	521	18	3	1173	3	SLCO6A1	5	101795359	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7378147	101795359	79119901	476	67331											
PRR16	51334	broad.mit.edu	37	chr5	120009917	120009917	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattgtccttcatacctgcAtgccgctgtatatgctgttg	8	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120009917	T	T	120009917	1	4	60	0	1	0	0	0	0	0	0	0	12695	232	8	5		5	PRR16	5	120009917	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	18214558	120009917	60905343	477	67332											
FTMT	94033	broad.mit.edu	37	chr5	121188108	121188108	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacatcaagaagccggaacaGgacgactgggaaagcgggct	15	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121188108	C	C	121188108	3	2	60	1	0	0	0	0	1	0	0	0	6145	991	35	4	452	4	FTMT	5	121188108	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1178191	121188108	59727152	478	67333											
MEGF10	84466	broad.mit.edu	37	chr5	126770432	126770432	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagacatgcccacagtgcGttcacagcagcgggccctgc	12	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126770432	C	C	126770432	3	2	60	1	0	0	0	0	1	0	0	0	9553	1145	40	4	1948	4	MEGF10	5	126770432	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5582324	126770432	54144828	479	67334											
FBN2	2201	broad.mit.edu	37	chr5	127641273	127641273	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggtaactaccaggactattGatgcagtctgcattccgctg	10	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127641273	T	T	127641273	2	4	60	1	0	0	0	0	0	0	0	1	5760	1280	45	3		3	FBN2	5	127641273	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	870841	127641273	53273987	480	67335											
FBN2	2201	broad.mit.edu	37	chr5	127684913	127684913	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcctctagtgatttccccCtaaatatctcatttaaagca	4	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127684913	T	T	127684913	1	4	60	0	1	0	0	0	0	0	0	0	5760	696	24	4		4	FBN2	5	127684913	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	43640	127684913	53230347	481	67336											
ADAMTS19	171019	broad.mit.edu	37	chr5	128984536	128984536	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtcccagaaaacaataCagaatatgtgagaatccacc	7	9	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128984536	A	A	128984536	4	1	60	1	0	0	0	0	0	1	0	0	264	489	17	3	2081	3	ADAMTS19	5	128984536	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1299623	128984536	51930724	482	67337											
PCDHA1	56147	broad.mit.edu	37	chr5	140168198	140168198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcatggccttcagcccaGgcctatctccaagtcttaac	6	16	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140168198	T	T	140168198	3	4	60	1	0	0	0	0	1	0	0	0	11613	1000	35	2	2325	2	PCDHA1	5	140168198	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	11183662	140168198	40747062	483	67338											
PCDHA7	56141	broad.mit.edu	37	chr5	140215966	140215966	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagccacagccaccgtgctGgtgtcgctggtggaaagcgg	15	12	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215966	A	A	140215966	2	1	60	1	0	0	0	0	0	0	0	1	11623	1335	47	4		4	PCDHA7	5	140215966	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	47768	140215966	40699294	484	67339											
PCDHA11	56138	broad.mit.edu	37	chr5	140249660	140249660	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtacaggctacagataaGgggactcccccaatggcagg	13	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140249660	A	A	140249660	2	1	60	1	0	0	0	0	0	0	0	1	11615	991	35	4		4	PCDHA11	5	140249660	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	33694	140249660	40665600	485	67340											
PCDHB1	29930	broad.mit.edu	37	chr5	140432413	140432413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaatcctccaatatttcGggaagattcctatatcttga	6	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140432413	T	T	140432413	3	4	60	1	0	0	0	0	1	0	0	0	11628	1116	39	1	1360	1	PCDHB1	5	140432413	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	182753	140432413	40482847	486	67341											
PCDHB13	56123	broad.mit.edu	37	chr5	140594521	140594521	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtagacacaggagtcaacGgagagatttcctattcactt	9	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140594521	A	A	140594521	3	1	60	1	0	0	0	0	1	0	0	0	11632	1117	39	4	828	4	PCDHB13	5	140594521	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	162108	140594521	40320739	487	67342											
PCDHB14	56122	broad.mit.edu	37	chr5	140605189	140605189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcgctcttcctcttctcGgtgctcctgttcgtggcggt	11	14	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605189	T	T	140605189	2	4	60	1	0	0	0	0	0	0	0	1	11633	1103	39	1		1	PCDHB14	5	140605189	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	10668	140605189	40310071	488	67343											
JAKMIP2	9832	broad.mit.edu	37	chr5	147009371	147009371	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctattccatcagtgccTgaacatgaagttagaggaag	9	10	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147009371	A	A	147009371	1	1	60	0	1	0	0	0	0	0	0	0	8011	1595	55	5		5	JAKMIP2	5	147009371	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	6404182	147009371	33905889	489	67344											
ARHGEF37	389337	broad.mit.edu	37	chr5	148989257	148989257	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcatcgttgaggcggtgGtgtgagtagaacggccagtg	19	6	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148989257	A	A	148989257	3	1	60	1	0	0	0	0	1	0	0	0	908	1275	44	4	467	4	ARHGEF37	5	148989257	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1979886	148989257	31926003	490	67345											
SGCD	6444	broad.mit.edu	37	chr5	155771455	155771455	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattttttttctcttctctcAgcggtttaatgtgagtgctt	7	7	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155771455	T	T	155771455	1	4	60	0	1	0	0	0	0	0	0	0	14314	203	7	5		5	SGCD	5	155771455	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	6782198	155771455	25143805	491	67346											
GABRB2	2561	broad.mit.edu	37	chr5	160753583	160753583	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggatatagataaatgctaCtggcctttagaaatccttta	7	6	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160753583	T	T	160753583	1	4	60	0	1	0	0	0	0	0	0	0	6227	580	20	4		4	GABRB2	5	160753583	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4982128	160753583	20161677	492	67347											
SLIT3	6586	broad.mit.edu	37	chr5	168222423	168222423	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggaggaatggacatggtcCgtcacctggacaggttgccc	14	11	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168222423	G	G	168222423	1	3	60	0	1	0	0	0	0	0	0	0	14855	667	23	4		4	SLIT3	5	168222423	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7468840	168222423	12692837	493	67348											
CPLX2	10814	broad.mit.edu	37	chr5	175305870	175305870	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctccccagccctgacccCtagctgaccccgccctctcc	5	24	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175305870	A	A	175305870	1	1	60	0	1	0	0	0	0	0	0	0	3837	696	24	2		2	CPLX2	5	175305870	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7083447	175305870	5609390	494	67349											
SLC34A1	6569	broad.mit.edu	37	chr5	176823935	176823935	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgctgggggtcccacttcctCtccctctgtccccaggtctt	9	18	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176823935	A	A	176823935	1	1	60	0	1	0	0	0	0	0	0	0	14681	928	32	3		3	SLC34A1	5	176823935	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1518065	176823935	4091325	495	67350											
FAM153A	285596	broad.mit.edu	37	chr5	177156387	177156387	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaattctgtcagtcaccTatagtgtgtatggtgaggtg	12	5	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177156387	A	A	177156387	1	1	60	0	1	0	0	0	0	0	0	0	5506	1537	53	5		5	FAM153A	5	177156387	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	332452	177156387	3758873	496	67351											
NHP2	55651	broad.mit.edu	37	chr5	177580533	177580533	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttctgaacctctttcacCccgcgccgaatctgcttctg	6	15	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177580533	A	A	177580533	2	1	60	1	0	0	0	0	0	0	0	1	10504	610	22	2		2	NHP2	5	177580533	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	424146	177580533	3334727	497	67352											
AGXT2L2	85007	broad.mit.edu	37	chr5	177641884	177641884	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaatgaagagcccaacaCccctgcaagggaaggtgacg	11	13	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177641884	T	T	177641884	3	4	60	1	0	0	0	0	1	0	0	0	407	507	18	4	279	4	AGXT2L2	5	177641884	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	61351	177641884	3273376	498	67353											
HNRNPH1	3187	broad.mit.edu	37	chr5	179047814	179047814	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctactgaaatacctaagctaCtcaactttaacgtctattaa	3	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179047814	T	T	179047814	1	4	60	0	1	0	0	0	0	0	0	0	7333	580	20	4		4	HNRNPH1	5	179047814	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1405930	179047814	1867446	499	67354											
DUSP22	56940	broad.mit.edu	37	chr6	311987	311987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcaccgtggggcgtgtGtgggtgtcctcatttgtatt	16	7	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	311987	T	T	311987	1	4	60	0	1	0	0	0	0	0	0	0	4861	1392	48	3		3	DUSP22	6	311987	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08		311987	170803080	500	67355											
TUBB2A	7280	broad.mit.edu	37	chr6	3154116	3154116	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaagcctcgtcctcgcccTcctcctcctcgaactcccct	4	21	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3154116	C	C	3154116	3	2	60	1	0	0	0	0	1	0	0	0	16880	1551	54	5	22	5	TUBB2A	6	3154116	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2842129	3154116	167960951	501	67356											
F13A1	2162	broad.mit.edu	37	chr6	6175065	6175065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttagctccgtacatcaGggcagtttctagggccaatc	9	11	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6175065	T	T	6175065	3	4	60	1	0	0	0	0	1	0	0	0	5383	991	35	2	719	2	F13A1	6	6175065	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3020949	6175065	164940002	502	67357											
SYCP2L	221711	broad.mit.edu	37	chr6	10929891	10929891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaattaccctcctgggctgGgtgcggtggctcacacccgt	13	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10929891	T	T	10929891	1	4	60	0	1	0	0	0	0	0	0	0	15552	1247	43	2		2	SYCP2L	6	10929891	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4754826	10929891	160185176	503	67358											
GMPR	2766	broad.mit.edu	37	chr6	16247255	16247255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggacaggttatcaggagCcgaccctggctttattcaga	12	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16247255	A	A	16247255	1	1	60	0	1	0	0	0	0	0	0	0	6560	754	26	3		3	GMPR	6	16247255	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5317364	16247255	154867812	504	67359											
RNF144B	255488	broad.mit.edu	37	chr6	18436164	18436164	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaatgctaaatgacgagtTaatggatgcagcacaccaac	8	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18436164	A	A	18436164	1	1	60	0	1	0	0	0	0	0	0	0	13557	1769	61	5		5	RNF144B	6	18436164	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2188909	18436164	152678903	505	67360											
SLC17A2	10246	broad.mit.edu	37	chr6	25916033	25916033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaaaaggaaatctgccaGctgacctcctaaaattgtac	8	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25916033	T	T	25916033	3	4	60	1	0	0	0	0	1	0	0	0	14530	962	34	3	328	3	SLC17A2	6	25916033	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7479869	25916033	145199034	506	67361											
TRIM31	11074	broad.mit.edu	37	chr6	30071104	30071104	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcttcccctccttttgctCaagaattcgtccattccttc	3	16	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30071104	A	A	30071104	1	1	60	0	1	0	0	0	0	0	0	0	16629	841	29	3		3	TRIM31	6	30071104	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4155071	30071104	141043963	507	67362											
PPP1R10	5514	broad.mit.edu	37	chr6	30572714	30572714	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcctagctgctgtgccctTtcttctactttaccttttat	4	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30572714	A	A	30572714	1	1	60	0	1	0	0	0	0	0	0	0	12453	1856	64	5		5	PPP1R10	6	30572714	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	501610	30572714	140542353	508	67363											
CFB	629	broad.mit.edu	37	chr6	31915913	31915913	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatctcgctgatcttccagGactagctccctgatcattcc	7	14	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31915913	T	T	31915913	1	4	60	0	1	0	0	0	0	0	0	0	3308	1189	41	3		3	CFB	6	31915913	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1343199	31915913	139199154	509	67364											
TAP2	6891	broad.mit.edu	37	chr6	32803313	32803313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaagagaaaagcatccCcaagtcctggcatacgggtg	10	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32803313	A	A	32803313	1	1	60	0	1	0	0	0	0	0	0	0	15670	638	22	2		2	TAP2	6	32803313	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	887400	32803313	138311754	510	67365											
BRD2	6046	broad.mit.edu	37	chr6	32940749	32940749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggggatgttgcagggcGgcggcacaggggtgtggggc	24	6	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32940749	T	T	32940749	1	4	60	0	1	0	0	0	0	0	0	0	1511	1131	39	1		1	BRD2	6	32940749	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	137436	32940749	138174318	511	67366											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33095917	33095917	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactccacctctgaagagcAggggactctctggctctggg	13	12	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33095917	T	T	33095917	1	4	60	0	1	0	0	0	0	0	0	0	7270	203	7	5		5	HLA-DPB1	6	33095917	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	155168	33095917	138019150	512	67367											
C6orf125	84300	broad.mit.edu	37	chr6	33676187	33676188	+	Intron	INS	-	TT	TT													gcgttgtcttgtttttctgaINStgtttcctcatctgtaaaat					rs140756479	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	33676188	TT	TT	33676187	6	5	60	0	1	1	1	0	0	0	0	0	2348	348	12	0		0	C6orf125	6	33676187	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	580270	33676187	137438880	513	67368											
SRPK1	6732	broad.mit.edu	37	chr6	35837144	35837144	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattacaatttaaacgtaacTtagacacacctgttgtaaag	6	7	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35837144	A	A	35837144	1	1	60	0	1	0	0	0	0	0	0	0	15277	1624	56	5		5	SRPK1	6	35837144	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2160957	35837144	135277923	514	67369											
SLC26A8	116369	broad.mit.edu	37	chr6	35945028	35945028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagactggcaatcttcttgcCcagaaatatgagcagaaagg	10	8	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35945028	A	A	35945028	3	1	60	1	0	0	0	0	1	0	0	0	14637	623	22	2	1834	2	SLC26A8	6	35945028	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	107884	35945028	135170039	515	67370											
MAPK13	5603	broad.mit.edu	37	chr6	36104167	36104167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcccagaaggggaaggGgcctggctgaggtcacaccc	17	11	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36104167	A	A	36104167	1	1	60	0	1	0	0	0	0	0	0	0	9367	1247	43	4		4	MAPK13	6	36104167	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	159139	36104167	135010900	516	67371											
KCNK5	8645	broad.mit.edu	37	chr6	39158990	39158990	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgatgcggtccagctggttCatgaacacctcgggggcagg	15	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39158990	A	A	39158990	3	1	60	1	0	0	0	0	1	0	0	0	8139	826	29	3	327	3	KCNK5	6	39158990	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3054823	39158990	131956077	517	67372											
KCNK5	8645	broad.mit.edu	37	chr6	39170172	39170172	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgctgaaaccaccagccTccaactggtcttgggttgca	11	13	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39170172	A	A	39170172	1	1	60	0	1	0	0	0	0	0	0	0	8139	1566	54	5		5	KCNK5	6	39170172	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	11182	39170172	131944895	518	67373											
KCNK16	83795	broad.mit.edu	37	chr6	39284543	39284543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccctgagataatgtgaCtgttttgttctcaccaacaa	6	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39284543	A	A	39284543	1	1	60	0	1	0	0	0	0	0	0	0	8133	580	20	3		3	KCNK16	6	39284543	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	114371	39284543	131830524	519	67374											
KIF6	221458	broad.mit.edu	37	chr6	39512554	39512554	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcctttaacaattccCtgcacacatcaggcatgtgt	5	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39512554	G	G	39512554	1	3	60	0	1	0	0	0	0	0	0	0	8378	696	24	4		4	KIF6	6	39512554	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	228011	39512554	131602513	520	67375											
DAAM2	23500	broad.mit.edu	37	chr6	39824315	39824315	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggagaggcagagctggacaGagggcagggcccctgtgctg	19	9	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39824315	C	C	39824315	1	2	60	0	1	0	0	0	0	0	0	0	4249	957	33	4		4	DAAM2	6	39824315	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	311761	39824315	131290752	521	67376											
TREML4	285852	broad.mit.edu	37	chr6	41197099	41197099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacactaacacacacaCaccaacaactctgtcatgca	2	17	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41197099	A	A	41197099	1	1	60	0	1	0	0	0	0	0	0	0	16598	493	17	3		3	TREML4	6	41197099	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1372784	41197099	129917968	522	67377											
CUL9	23113	broad.mit.edu	37	chr6	43173730	43173730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactgaggcttggcccgggCtgtgtgtgctgcaggcatta	15	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43173730	T	T	43173730	1	4	60	0	1	0	0	0	0	0	0	0	4094	812	28	4		4	CUL9	6	43173730	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1976631	43173730	127941337	523	67378											
TTBK1	84630	broad.mit.edu	37	chr6	43226905	43226906	+	Missense_Mutation	DNP	GG	CT	CT													gggaggccctctgaggggctGggccccagtccccaccttgt					rs55908453		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	43226906	CT	CT	43226905	3	2	60	1	0	0	0	0	1	0	0	0	16802	1335	47	4	1184	4	TTBK1	6	43226905	Missense_Mutation	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	53175	43226905	127888162	524	67379											
SLC22A7	10864	broad.mit.edu	37	chr6	43267830	43267830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcaggcagctggggagCgggagatacaggaagtgaaa	18	6	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43267830	A	A	43267830	1	1	60	0	1	0	0	0	0	0	0	0	14573	783	27	3		3	SLC22A7	6	43267830	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	40925	43267830	127847237	525	67380											
GPR116	221395	broad.mit.edu	37	chr6	46856005	46856005	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagattgctctgatactcAggagctcagacagtctgtct	9	9	5	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46856005	C	C	46856005	1	2	60	0	1	0	0	0	0	0	0	0	6698	203	7	5		5	GPR116	6	46856005	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3588175	46856005	124259062	526	67381											
C6orf138	442213	broad.mit.edu	37	chr6	47846611	47846611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagaacaggcactgtgaCagacaagctgtaatggtcca	10	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47846611	A	A	47846611	3	1	60	1	0	0	0	0	1	0	0	0	2355	478	17	3	575	3	C6orf138	6	47846611	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	990606	47846611	123268456	527	67382											
PKHD1	5314	broad.mit.edu	37	chr6	51556979	51556979	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcacattgaaaatccccAgttcttggcaaagctatgta	7	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51556979	T	T	51556979	1	4	60	0	1	0	0	0	0	0	0	0	12066	203	7	5		5	PKHD1	6	51556979	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3710368	51556979	119558088	528	67383											
GSTA2	2939	broad.mit.edu	37	chr6	52622618	52622618	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaagtatgtgataacgcAatcgtaaatctgacttaaga	9	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52622618	C	C	52622618	1	2	60	0	1	0	0	0	0	0	0	0	6897	145	5	5		5	GSTA2	6	52622618	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1065639	52622618	118492449	529	67384											
HCRTR2	3062	broad.mit.edu	37	chr6	55145160	55145160	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catactgaagacagagagacTgtgtatgcctggtttacctt	10	8	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55145160	A	A	55145160	2	1	60	1	0	0	0	0	0	0	0	1	7069	1567	55	5		5	HCRTR2	6	55145160	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2522542	55145160	115969907	530	67385											
GFRAL	389400	broad.mit.edu	37	chr6	55216276	55216276	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaatctgatataccttgtcAgcagtccaaagaagctcttc	6	11	4	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55216276	T	T	55216276	3	4	60	1	0	0	0	0	1	0	0	0	6415	188	7	5	614	5	GFRAL	6	55216276	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	71116	55216276	115898791	531	67386											
GFRAL	389400	broad.mit.edu	37	chr6	55224036	55224036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagtaaaagaggtaatcCagcacagacatttttgtgtt	8	6	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55224036	A	A	55224036	1	1	60	0	1	0	0	0	0	0	0	0	6415	609	21	2		2	GFRAL	6	55224036	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7760	55224036	115891031	532	67387											
COL21A1	81578	broad.mit.edu	37	chr6	56035800	56035800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttttgatgttacttcatatCcttttatcttttttggtgaa	5	6	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56035800	A	A	56035800	3	1	60	1	0	0	0	0	1	0	0	0	3712	855	30	3	2214	3	COL21A1	6	56035800	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	811764	56035800	115079267	533	67388											
PRIM2	5558	broad.mit.edu	37	chr6	57272214	57272214	+	Intron	DEL	T	-	-													gacatactgaaagtcacagaTtttttttttcacttaaatgg					rs11352940		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57272214	-	-	57272214	6	5	60	0	1	1	0	1	0	0	0	0	12597	1508	52	0		0	PRIM2	6	57272214	Intron	DEL	T	TCGA-17-Z030-01A-01W-0746-08	1236414	57272214	113842853	534	67389											
PRIM2	5558	broad.mit.edu	37	chr6	57343118	57343118	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttgttgttgtgttttttTtttttttttttttttttttt	5	0	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57343118	G	G	57343118	1	3	60	0	1	0	0	0	0	0	0	0	12597	1856	64	5		5	PRIM2	6	57343118	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	70904	57343118	113771949	535	67390											
BAI3	577	broad.mit.edu	37	chr6	69665788	69665788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatctcatgctggtgtgacCttccattgtattcattcata	6	9	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69665788	A	A	69665788	1	1	60	0	1	0	0	0	0	0	0	0	1305	696	24	2		2	BAI3	6	69665788	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	12322670	69665788	101449279	536	67391											
COL19A1	1310	broad.mit.edu	37	chr6	70856741	70856741	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtgttcacggttccccagGggacataggcccacaaggga	14	11	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70856741	C	C	70856741	3	2	60	1	0	0	0	0	1	0	0	0	3708	1232	43	4	1955	4	COL19A1	6	70856741	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1190953	70856741	100258326	537	67392											
COL19A1	1310	broad.mit.edu	37	chr6	70875770	70875770	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgtgattaatttcagaaGatagtttgtaaacctggggt	10	5	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70875770	T	T	70875770	1	4	60	0	1	0	0	0	0	0	0	0	3708	957	33	3		3	COL19A1	6	70875770	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	19029	70875770	100239297	538	67393											
COL19A1	1310	broad.mit.edu	37	chr6	70916936	70916936	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaacccagaagattgcctCtatcctgtgtctcatgccca	7	13	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70916936	A	A	70916936	2	1	60	1	0	0	0	0	0	0	0	1	3708	900	32	3		3	COL19A1	6	70916936	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	41166	70916936	100198131	539	67394											
COL9A1	1297	broad.mit.edu	37	chr6	70964941	70964941	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaagaatagacaagacatGttcagttaacataatactta	6	5	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70964941	A	A	70964941	1	1	60	0	1	0	0	0	0	0	0	0	3739	1392	48	4		4	COL9A1	6	70964941	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	48005	70964941	100150126	540	67395											
COL9A1	1297	broad.mit.edu	37	chr6	71004378	71004378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctatagaaaagctacaGtgtaaaaacctatgtaccgt	7	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71004378	T	T	71004378	1	4	60	0	1	0	0	0	0	0	0	0	3739	1044	36	3		3	COL9A1	6	71004378	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	39437	71004378	100110689	541	67396											
KHDC1	80759	broad.mit.edu	37	chr6	73951332	73951332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggaacgctaagacacaCggttccacttatcctgggag	11	11	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73951332	A	A	73951332	3	1	60	1	0	0	0	0	1	0	0	0	8214	536	19	3	83	3	KHDC1	6	73951332	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2946954	73951332	97163735	542	67397											
COL12A1	1303	broad.mit.edu	37	chr6	75855983	75855983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaaacagaaaagcagacCatcagtctagttcctttcat	5	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75855983	A	A	75855983	1	1	60	0	1	0	0	0	0	0	0	0	3701	609	21	2		2	COL12A1	6	75855983	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1904651	75855983	95259084	543	67398											
TTK	7272	broad.mit.edu	37	chr6	80744816	80744816	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgaaatagcttatttgaatAaactacaacaacacagtgat	5	7	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80744816	T	T	80744816	4	4	60	1	0	0	0	0	0	1	0	0	16846	363	13	5	1783	5	TTK	6	80744816	Nonsense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	4888833	80744816	90370251	544	67399											
IBTK	25998	broad.mit.edu	37	chr6	82881188	82881188	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactgccagtggtccctgcGgtgtcctttcaacaatgaca	10	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82881188	A	A	82881188	3	1	60	1	0	0	0	0	1	0	0	0	7546	1116	39	4	49	4	IBTK	6	82881188	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2136372	82881188	88233879	545	67400											
SNX14	57231	broad.mit.edu	37	chr6	86256841	86256841	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcctcacccacagtcaaaCaaaactgcaacacgtgcact	5	15	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86256841	T	T	86256841	3	4	60	1	0	0	0	0	1	0	0	0	14999	478	17	4	1815	4	SNX14	6	86256841	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3375653	86256841	84858226	546	67401											
GABRR2	2570	broad.mit.edu	37	chr6	89975453	89975454	+	Missense_Mutation	DNP	CG	AT	AT													aagaagatgtggcgacgcaaCgtgaagttaatgtacagacg					rs146287342		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	89975454	AT	AT	89975453	3	1	60	1	0	0	0	0	1	0	0	0	6237	523	19	3	641	3	GABRR2	6	89975453	Missense_Mutation	DNP	CG	TCGA-17-Z030-01A-01W-0746-08	3718612	89975453	81139614	547	67402											
EPHA7	2045	broad.mit.edu	37	chr6	93979224	93979224	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttacctgtagcttcctctAgtgtagcaacatcaagtctg	7	10	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93979224	G	G	93979224	3	3	60	1	0	0	0	0	1	0	0	0	5214	420	15	5	1436	5	EPHA7	6	93979224	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	4003771	93979224	77135843	548	67403											
MCHR2	84539	broad.mit.edu	37	chr6	100403948	100403948	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccacactggcagtttgatAagcaaactctttattccagg	7	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100403948	T	T	100403948	3	4	60	1	0	0	0	0	1	0	0	0	9476	362	13	5	966	5	MCHR2	6	100403948	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	6424724	100403948	70711119	549	67404											
KIAA1919	91749	broad.mit.edu	37	chr6	111585233	111585233	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atactaaactgtcacttgcaAtgccccctaaaatgacacag	5	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111585233	T	T	111585233	1	4	60	0	1	0	0	0	0	0	0	0	8332	116	4	5		5	KIAA1919	6	111585233	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	11181285	111585233	59529834	550	67405											
DSE	29940	broad.mit.edu	37	chr6	116720666	116720666	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtccagccccttggaaTacctccctccctgggatccc	8	18	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116720666	C	C	116720666	3	2	60	1	0	0	0	0	1	0	0	0	4814	1406	49	5	255	5	DSE	6	116720666	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	5135433	116720666	54394401	551	67406											
C6orf170	221322	broad.mit.edu	37	chr6	121481242	121481242	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattggccaaggatatggaTtatcactctaaaaaagaagc	8	7	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121481242	A	A	121481242	3	1	60	1	0	0	0	0	1	0	0	0	2367	1493	52	5	1122	5	C6orf170	6	121481242	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4760576	121481242	49633825	552	67407											
GJA1	2697	broad.mit.edu	37	chr6	121767996	121767996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggtgcccaggcaacatGggtgactggagcgccttagg	17	9	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121767996	T	T	121767996	3	4	60	1	0	0	0	0	1	0	0	0	6464	1348	47	2	5	2	GJA1	6	121767996	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	286754	121767996	49347071	553	67408											
NKAIN2	154215	broad.mit.edu	37	chr6	125076566	125076566	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttgtctggcaacaccctCatagacatacccagaaacaa	5	13	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125076566	A	A	125076566	1	1	60	0	1	0	0	0	0	0	0	0	10531	841	29	3		3	NKAIN2	6	125076566	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3308570	125076566	46038501	554	67409											
TPD52L1	7164	broad.mit.edu	37	chr6	125493298	125493299	+	Intron	INS	-	T	T													tttctttctttctttctttcINStttcttttctttctttcttt							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125493299	T	T	125493298	6	5	60	0	1	1	1	0	0	0	0	0	16522	928	32	0		0	TPD52L1	6	125493298	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	416732	125493298	45621769	555	67410											
TPD52L1	7164	broad.mit.edu	37	chr6	125541166	125541166	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctccacactatggaagcaGaagttggtttaaattcactt	7	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125541166	C	C	125541166	1	2	60	0	1	0	0	0	0	0	0	0	16522	957	33	4		4	TPD52L1	6	125541166	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	47868	125541166	45573901	556	67411											
HEY2	23493	broad.mit.edu	37	chr6	126080723	126080723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgtccctctctgccacCgtccacgccgcagccgcagc	8	21	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126080723	A	A	126080723	2	1	60	1	0	0	0	0	0	0	0	1	7146	639	23	1		1	HEY2	6	126080723	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	539557	126080723	45034344	557	67412											
CENPW	387103	broad.mit.edu	37	chr6	126667464	126667464	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgtactggccgcagcaaaGgtaaaatccaaatttctttt	7	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126667464	C	C	126667464	3	2	60	1	0	0	0	0	1	0	0	0	3274	1014	35	4	246	4	CENPW	6	126667464	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	586741	126667464	44447603	558	67413											
LAMA2	3908	broad.mit.edu	37	chr6	129468152	129468152	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggagggatgtgcatctgcTatggtcatgccagggcttgt	15	7	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129468152	A	A	129468152	3	1	60	1	0	0	0	0	1	0	0	0	8678	1522	53	5	890	5	LAMA2	6	129468152	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2800688	129468152	41646915	559	67414											
LAMA2	3908	broad.mit.edu	37	chr6	129479508	129479508	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgccactctttcgccatgCcatttgcccatccgtacttc	5	18	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129479508	T	T	129479508	1	4	60	0	1	0	0	0	0	0	0	0	8678	754	26	4		4	LAMA2	6	129479508	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	11356	129479508	41635559	560	67415											
LAMA2	3908	broad.mit.edu	37	chr6	129581800	129581800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgtacgattcctacagCtgtataatacctaagaactt	6	9	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129581800	A	A	129581800	1	1	60	0	1	0	0	0	0	0	0	0	8678	812	28	3		3	LAMA2	6	129581800	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	102292	129581800	41533267	561	67416											
C6orf191	253582	broad.mit.edu	37	chr6	130182435	130182435	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcttttcaattactcctGgagactaagtgtgagacgca	10	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130182435	T	T	130182435	1	4	60	0	1	0	0	0	0	0	0	0	2371	1363	47	2		2	C6orf191	6	130182435	5'Flank	SNP	G	TCGA-17-Z030-01A-01W-0746-08	600635	130182435	40932632	562	67417											
MED23	9439	broad.mit.edu	37	chr6	131900174	131900174	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatatatgcctattttaTacaattgagatcatcctaca	5	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131900174	C	C	131900174	1	2	60	0	1	0	0	0	0	0	0	0	9534	1421	49	5		5	MED23	6	131900174	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1717739	131900174	39214893	563	67418											
ENPP1	5167	broad.mit.edu	37	chr6	132182763	132182763	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagctaagtatcaaggccTcaagtctggcacatttttct	7	11	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132182763	A	A	132182763	3	1	60	1	0	0	0	0	1	0	0	0	5171	1551	54	5	978	5	ENPP1	6	132182763	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	282589	132182763	38932304	564	67419											
TAAR9	134860	broad.mit.edu	37	chr6	132860208	132860208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaggctgccaaaaccttGggaattgctatggcagcatt	11	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132860208	T	T	132860208	3	4	60	1	0	0	0	0	1	0	0	0	15613	1339	47	2	782	2	TAAR9	6	132860208	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	677445	132860208	38254859	565	67420											
VNN2	8875	broad.mit.edu	37	chr6	133072721	133072721	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaccaaaactgccaatTtccccatcagaattgggcat	5	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133072721	A	A	133072721	1	1	60	0	1	0	0	0	0	0	0	0	17310	1856	64	5		5	VNN2	6	133072721	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	212513	133072721	38042346	566	67421											
VNN2	8875	broad.mit.edu	37	chr6	133073612	133073612	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaattacctgtcatatttaGgctgacatgatgtgtgttgg	11	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133073612	A	A	133073612	2	1	60	1	0	0	0	0	0	0	0	1	17310	991	35	4		4	VNN2	6	133073612	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	891	133073612	38041455	567	67422											
GRM1	2911	broad.mit.edu	37	chr6	146720363	146720363	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgatcatcatggaacccCctatgcccattctgtcctac	5	17	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146720363	A	A	146720363	3	1	60	1	0	0	0	0	1	0	0	0	6862	623	22	2	2214	2	GRM1	6	146720363	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	13646751	146720363	24394704	568	67423											
RBM16	22828	broad.mit.edu	37	chr6	155095107	155095107	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttttgctgtatgtaaatttGttcttttttcatcagttgta	7	4	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155095107	C	C	155095107	1	2	60	0	1	0	0	0	0	0	0	0	13226	1392	48	4		4	RBM16	6	155095107	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8374744	155095107	16019960	569	67424											
ARID1B	57492	broad.mit.edu	37	chr6	157527833	157527833	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctccccccttaagctccgCaggtagaaagaaagagcaag	9	13	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157527833	T	T	157527833	3	4	60	1	0	0	0	0	1	0	0	0	916	710	25	4	5636	4	ARID1B	6	157527833	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2432726	157527833	13587234	570	67425											
C6orf35	729515	broad.mit.edu	37	chr6	157731900	157731900	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgcactcacctagcctcatCatagtgccccagtgtgcact	8	15	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157731900	A	A	157731900	1	1	60	0	1	0	0	0	0	0	0	0	2386	841	29	3		3	C6orf35	6	157731900	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	204067	157731900	13383167	571	67426											
SNX9	51429	broad.mit.edu	37	chr6	158288493	158288493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcatgtttgtaccagcatGcttagaaagtgaactgtaca	8	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158288493	T	T	158288493	1	4	60	0	1	0	0	0	0	0	0	0	15023	1334	46	3		3	SNX9	6	158288493	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	556593	158288493	12826574	572	67427											
FNDC1	84624	broad.mit.edu	37	chr6	159642652	159642652	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcggaatccgtgtatgtggtCtccctgcagtccatgaactc	10	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159642652	A	A	159642652	2	1	60	1	0	0	0	0	0	0	0	1	6026	900	32	3		3	FNDC1	6	159642652	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1354159	159642652	11472415	573	67428											
IGF2R	3482	broad.mit.edu	37	chr6	160490963	160490963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcccgtgaacctcggcaGggtaagggacggacctcagt	14	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160490963	T	T	160490963	3	4	60	1	0	0	0	0	1	0	0	0	7646	1000	35	2	4438	2	IGF2R	6	160490963	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	848311	160490963	10624104	574	67429											
LPA	4018	broad.mit.edu	37	chr6	160978734	160978734	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccattttaggtacaataaTattccgaaaagcaaaaacgg	6	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160978734	C	C	160978734	1	2	60	0	1	0	0	0	0	0	0	0	8990	1421	49	5		5	LPA	6	160978734	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	487771	160978734	10136333	575	67430											
MAP3K4	4216	broad.mit.edu	37	chr6	161527752	161527752	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaattggtaaggaaattaagGagcatgatgtcaagatagtc	11	3	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161527752	C	C	161527752	1	2	60	0	1	0	0	0	0	0	0	0	9344	1189	41	4		4	MAP3K4	6	161527752	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	549018	161527752	9587315	576	67431											
PARK2	5071	broad.mit.edu	37	chr6	162851313	162851313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttggtgactcatttaaccCttgtagcaaccccatgaggt	9	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162851313	A	A	162851313	1	1	60	0	1	0	0	0	0	0	0	0	11543	696	24	2		2	PARK2	6	162851313	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1323561	162851313	8263754	577	67432											
C6orf118	168090	broad.mit.edu	37	chr6	165715012	165715012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgcaccgagagctatgCcctgagagctcttccctgag	11	14	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165715012	A	A	165715012	1	1	60	0	1	0	0	0	0	0	0	0	2346	754	26	3		3	C6orf118	6	165715012	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2863699	165715012	5400055	578	67433											
IQCE	23288	broad.mit.edu	37	chr7	2611888	2611888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcgtggactggcgtccccGgcggcactcctgactgtctg	14	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2611888	T	T	2611888	3	4	60	1	0	0	0	0	1	0	0	0	7876	1116	39	1	340	1	IQCE	7	2611888	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08		2611888	156526775	579	67434											
CARD11	84433	broad.mit.edu	37	chr7	2978336	2978336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcgcagctcctctgcctGgcgggcctcctcctgcaggt	12	17	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2978336	T	T	2978336	3	4	60	1	0	0	0	0	1	0	0	0	2671	1357	47	2	2546	2	CARD11	7	2978336	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	366448	2978336	156160327	580	67435											
CARD11	84433	broad.mit.edu	37	chr7	2983857	2983857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acccctcacctcgagttggaGgtctcggctcctcatgaccg	10	16	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2983857	C	C	2983857	3	2	60	1	0	0	0	0	1	0	0	0	2671	1000	35	4	2875	4	CARD11	7	2983857	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5521	2983857	156154806	581	67436											
SDK1	221935	broad.mit.edu	37	chr7	4198109	4198109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacctcctacaagctgcGcctgaaagccaccaacgaca	6	17	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4198109	T	T	4198109	3	4	60	1	0	0	0	0	1	0	0	0	14081	1087	38	3	4777	3	SDK1	7	4198109	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1214252	4198109	154940554	582	67437											
SCIN	85477	broad.mit.edu	37	chr7	12692317	12692317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcacaggctggttcctgGgctgggattccagcaagtgg	14	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12692317	T	T	12692317	3	4	60	1	0	0	0	0	1	0	0	0	14018	1232	43	2	2187	2	SCIN	7	12692317	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8494208	12692317	146446346	583	67438											
TMEM195	392636	broad.mit.edu	37	chr7	15267198	15267198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcttataaaatacaactGgctaaaatcacttgggacca	6	9	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15267198	T	T	15267198	1	4	60	0	1	0	0	0	0	0	0	0	16240	1363	47	2		2	TMEM195	7	15267198	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2574881	15267198	143871465	584	67439											
MEOX2	4223	broad.mit.edu	37	chr7	15652107	15652107	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagggtggctgcaccaattcCcgacagctctgatgggagaa	14	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15652107	G	G	15652107	3	3	60	1	0	0	0	0	1	0	0	0	9567	632	22	4	98	4	MEOX2	7	15652107	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	384909	15652107	143486556	585	67440											
SNX13	23161	broad.mit.edu	37	chr7	17833746	17833746	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctgctttgaccgtgaatGcagtttgttgaaaagttcac	9	8	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17833746	A	A	17833746	1	1	60	0	1	0	0	0	0	0	0	0	14998	1319	46	4		4	SNX13	7	17833746	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2181639	17833746	141304917	586	67441											
HDAC9	9734	broad.mit.edu	37	chr7	18748911	18748911	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcccacttatgagtgagaaCatgcagtgtttggttttctg	10	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18748911	G	G	18748911	1	3	60	0	1	0	0	0	0	0	0	0	7081	493	17	4		4	HDAC9	7	18748911	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	915165	18748911	140389752	587	67442											
HDAC9	9734	broad.mit.edu	37	chr7	18767315	18767315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtctccaggactcactcttCccctgctgcctctgttttac	6	17	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18767315	A	A	18767315	3	1	60	1	0	0	0	0	1	0	0	0	7081	855	30	3	1941	3	HDAC9	7	18767315	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	18404	18767315	140371348	588	67443											
HDAC9	9734	broad.mit.edu	37	chr7	18875156	18875156	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcatcctgtacatttcaCtccatcgctatgatgaaggg	8	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18875156	T	T	18875156	3	4	60	1	0	0	0	0	1	0	0	0	7081	565	20	4	2658	4	HDAC9	7	18875156	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	107841	18875156	140263507	589	67444											
DNAH11	8701	broad.mit.edu	37	chr7	21894027	21894027	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcttctttattttgttaTtaatgacctccaaaaaatca	2	8	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21894027	C	C	21894027	3	2	60	1	0	0	0	0	1	0	0	0	4639	1493	52	5	11448	5	DNAH11	7	21894027	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3018871	21894027	137244636	590	67445											
RAPGEF5	9771	broad.mit.edu	37	chr7	22165307	22165307	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaacaggaaacacatcaatgGaagggtcgttgagggtgtta	14	5	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22165307	A	A	22165307	1	1	60	0	1	0	0	0	0	0	0	0	13155	1189	41	4		4	RAPGEF5	7	22165307	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	271280	22165307	136973356	591	67446											
RAPGEF5	9771	broad.mit.edu	37	chr7	22184650	22184650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaatggcacttctcacaCtagaaacttactgagccgca	9	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22184650	A	A	22184650	1	1	60	0	1	0	0	0	0	0	0	0	13155	580	20	3		3	RAPGEF5	7	22184650	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	19343	22184650	136954013	592	67447											
IGF2BP3	10643	broad.mit.edu	37	chr7	23391091	23391091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccctctgcccaagcccCcggcgacctcggggctgctg	13	19	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23391091	A	A	23391091	2	1	60	1	0	0	0	0	0	0	0	1	7645	610	22	2		2	IGF2BP3	7	23391091	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1206441	23391091	135747572	593	67448											
OSBPL3	26031	broad.mit.edu	37	chr7	24853912	24853913	+	Intron	DEL	TA	-	-													ggaacgaggtggcgtgtgtgTatatgggtgtatctgcaagt					rs143353568		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24853913	-	-	24853912	6	5	60	0	1	1	0	1	0	0	0	0	11373	1653	57	0		0	OSBPL3	7	24853912	Intron	DEL	TA	TCGA-17-Z030-01A-01W-0746-08	1462821	24853912	134284751	594	67449											
HIBADH	11112	broad.mit.edu	37	chr7	27578107	27578107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaggacgtttttccttgCccaattccaggggctgcttt	9	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27578107	A	A	27578107	1	1	60	0	1	0	0	0	0	0	0	0	7166	754	26	3		3	HIBADH	7	27578107	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2724195	27578107	131560556	595	67450											
GHRHR	2692	broad.mit.edu	37	chr7	31016973	31016973	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctatccctcatggagtccCcctcccaccagacctaaggc	8	18	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31016973	T	T	31016973	1	4	60	0	1	0	0	0	0	0	0	0	6437	638	22	4		4	GHRHR	7	31016973	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3438866	31016973	128121690	596	67451											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31126479	31126479	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgggggagcaatagcctctCggagccccaggtctacggtg	15	11	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31126479	A	A	31126479	1	1	60	0	1	0	0	0	0	0	0	0	303	899	31	3		3	ADCYAP1R1	7	31126479	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	109506	31126479	128012184	597	67452											
CCDC129	223075	broad.mit.edu	37	chr7	31682218	31682218	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgactcctaaggcaatgacAagaagaaaatctcaccttaa	6	10	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31682218	C	C	31682218	1	2	60	0	1	0	0	0	0	0	0	0	2790	145	5	5		5	CCDC129	7	31682218	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	555739	31682218	127456445	598	67453											
C7orf16	10842	broad.mit.edu	37	chr7	31746730	31746730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaagaggtttctgggttgcCatgctcctttgtactgtgtc	11	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31746730	T	T	31746730	1	4	60	0	1	0	0	0	0	0	0	0	2403	609	21	4		4	C7orf16	7	31746730	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	64512	31746730	127391933	599	67454											
BMPER	168667	broad.mit.edu	37	chr7	34085926	34085926	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcttttcttagggaggcagGacacaatgtgtgagagaagt	13	6	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34085926	A	A	34085926	2	1	60	1	0	0	0	0	0	0	0	1	1474	1165	41	4		4	BMPER	7	34085926	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2339196	34085926	125052737	600	67455											
NPSR1	387129	broad.mit.edu	37	chr7	34898866	34898866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcccctccacagagccttGtgagtcagttcagaagaaat	10	11	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34898866	T	T	34898866	1	4	60	0	1	0	0	0	0	0	0	0	10695	1392	48	3		3	NPSR1	7	34898866	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	812940	34898866	124239797	601	67456											
ELMO1	9844	broad.mit.edu	37	chr7	37485937	37485937	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaatactcaaaatacaccAatgactgtataatgccaggg	7	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37485937	G	G	37485937	1	3	60	0	1	0	0	0	0	0	0	0	5107	145	5	5		5	ELMO1	7	37485937	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2587071	37485937	121652726	602	67457											
TXNDC3	51314	broad.mit.edu	37	chr7	37898427	37898427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccagtgttggaggtgggGcctagtgggaggtgtttggg	20	6	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37898427	T	T	37898427	1	4	60	0	1	0	0	0	0	0	0	0	16924	1218	42	3		3	TXNDC3	7	37898427	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	412490	37898427	121240236	603	67458											
VPS41	27072	broad.mit.edu	37	chr7	38869770	38869770	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcaagattgtcttaatgCagttatatagtaagcaaggt	8	4	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38869770	A	A	38869770	1	1	60	0	1	0	0	0	0	0	0	0	17337	725	25	3		3	VPS41	7	38869770	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	971343	38869770	120268893	604	67459											
POU6F2	11281	broad.mit.edu	37	chr7	39246893	39246893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttttggtacttcttcgGgaactttctgaccctactta	7	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39246893	T	T	39246893	1	4	60	0	1	0	0	0	0	0	0	0	12381	1247	43	2		2	POU6F2	7	39246893	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	377123	39246893	119891770	605	67460											
C7orf10	79783	broad.mit.edu	37	chr7	40193433	40193433	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcaatatgccattaagAactggctctgtggatattat	8	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40193433	T	T	40193433	1	4	60	0	1	0	0	0	0	0	0	0	2401	261	9	5		5	C7orf10	7	40193433	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	946540	40193433	118945230	606	67461											
HECW1	23072	broad.mit.edu	37	chr7	43482219	43482219	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttgagatcacttcctccAtccacccaggtattttcagc	6	13	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43482219	T	T	43482219	3	4	60	1	0	0	0	0	1	0	0	0	7109	217	8	5	1066	5	HECW1	7	43482219	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3288786	43482219	115656444	607	67462											
OGDH	4967	broad.mit.edu	37	chr7	44713410	44713410	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctactgccagcatattgggGtggagttcatgttcatcaat	10	9	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44713410	A	A	44713410	3	1	60	1	0	0	0	0	1	0	0	0	10934	1261	44	4	771	4	OGDH	7	44713410	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1231191	44713410	114425253	608	67463											
TNS3	64759	broad.mit.edu	37	chr7	47467812	47467812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacacaggtcagccgagcCcttggtatccagaacagctc	10	13	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47467812	A	A	47467812	1	1	60	0	1	0	0	0	0	0	0	0	16467	638	22	2		2	TNS3	7	47467812	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2754402	47467812	111670851	609	67464											
PKD1L1	168507	broad.mit.edu	37	chr7	47925346	47925346	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagcggccagtcatcaggGatcccttgctctgtggccct	12	14	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47925346	A	A	47925346	3	1	60	1	0	0	0	0	1	0	0	0	12059	1174	41	4	5566	4	PKD1L1	7	47925346	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	457534	47925346	111213317	610	67465											
HUS1	3364	broad.mit.edu	37	chr7	48005078	48005078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagagacctagtgcagcaCacacattttgatctctactt	6	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48005078	A	A	48005078	1	1	60	0	1	0	0	0	0	0	0	0	7529	493	17	3		3	HUS1	7	48005078	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	79732	48005078	111133585	611	67466											
ABCA13	154664	broad.mit.edu	37	chr7	48398820	48398820	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggatgctctgagtggcAgcccactccattcttgggca	14	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48398820	T	T	48398820	1	4	60	0	1	0	0	0	0	0	0	0	31	203	7	5		5	ABCA13	7	48398820	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	393742	48398820	110739843	612	67467											
ABCA13	154664	broad.mit.edu	37	chr7	48416091	48416091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagggggcatgacatttGgctgggtttgctggatgatt	15	5	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48416091	T	T	48416091	3	4	60	1	0	0	0	0	1	0	0	0	31	1348	47	2	11224	2	ABCA13	7	48416091	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	17271	48416091	110722572	613	67468											
ABCA13	154664	broad.mit.edu	37	chr7	48431671	48431671	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccgtccgggaacatttGctgctctttgcttccataaa	7	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48431671	A	A	48431671	2	1	60	1	0	0	0	0	0	0	0	1	31	1310	46	4		4	ABCA13	7	48431671	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	15580	48431671	110706992	614	67469											
ABCA13	154664	broad.mit.edu	37	chr7	48520641	48520641	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaatttcagaagtgtccAaatagaagtgctagtgctcc	8	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48520641	T	T	48520641	2	4	60	1	0	0	0	0	0	0	0	1	31	117	5	5		5	ABCA13	7	48520641	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	88970	48520641	110618022	615	67470											
ABCA13	154664	broad.mit.edu	37	chr7	48666892	48666892	+	Intron	DEL	A	-	-													ccacttcaatagtctcaaccAaccttatgtataactgacta					rs75383723		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48666892	-	-	48666892	6	5	60	0	1	1	0	1	0	0	0	0	31	145	5	0		0	ABCA13	7	48666892	Intron	DEL	A	TCGA-17-Z030-01A-01W-0746-08	146251	48666892	110471771	616	67471											
COBL	23242	broad.mit.edu	37	chr7	51097085	51097085	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcctgctggcaacaccctCcgagtcgaaagacccagcat	8	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51097085	A	A	51097085	4	1	60	1	0	0	0	0	0	1	0	0	3685	864	30	3	2093	3	COBL	7	51097085	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2430193	51097085	108041578	617	67472											
COBL	23242	broad.mit.edu	37	chr7	51203955	51203955	+	Frame_Shift_Del	DEL	C	-	-													cggacacccctgagatgctgCccagcgagagggatggaccc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51203955	-	-	51203955	7	5	60	1	0	1	0	1	0	0	0	0	3685	739	26	0	2960	0	COBL	7	51203955	Frame_Shift_Del	DEL	C	TCGA-17-Z030-01A-01W-0746-08	106870	51203955	107934708	618	67473											
ZNF713	349075	broad.mit.edu	37	chr7	55991075	55991075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttttgtgaatatagtttGggctgggatagaagaatgct	13	2	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55991075	T	T	55991075	1	4	60	0	1	0	0	0	0	0	0	0	18245	1363	47	2		2	ZNF713	7	55991075	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4787120	55991075	103147588	619	67474											
ZNF716	441234	broad.mit.edu	37	chr7	57522270	57522270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagatgtgatgttagagaaCtacagaaacctggtctccct	10	8	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57522270	A	A	57522270	3	1	60	1	0	0	0	0	1	0	0	0	18247	564	20	3	150	3	ZNF716	7	57522270	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1531195	57522270	101616393	620	67475											
C7orf42	55069	broad.mit.edu	37	chr7	66407053	66407053	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgggctggctggtccttgTgcagtggggcaacaccctgt	15	13	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66407053	G	G	66407053	1	3	60	0	1	0	0	0	0	0	0	0	2417	1711	59	5		5	C7orf42	7	66407053	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	8884783	66407053	92731610	621	67476											
AUTS2	26053	broad.mit.edu	37	chr7	70254730	70254730	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcttcccctctctcccCcagggaaagcgtcgagaaga	9	15	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70254730	A	A	70254730	1	1	60	0	1	0	0	0	0	0	0	0	1230	638	22	2		2	AUTS2	7	70254730	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3847677	70254730	88883933	622	67477											
FKBP6	8468	broad.mit.edu	37	chr7	72714520	72714520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcattccaggcaccgcCacccccacctttggtctgaa	6	18	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72714520	A	A	72714520	1	1	60	0	1	0	0	0	0	0	0	0	5969	609	21	2		2	FKBP6	7	72714520	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2459790	72714520	86424143	623	67478											
TRIM50	135892	broad.mit.edu	37	chr7	72732812	72732812	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggatgggacgcctccctgTccactcacccggatgaactt	12	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72732812	A	A	72732812	1	1	60	0	1	0	0	0	0	0	0	0	16651	1682	58	5		5	TRIM50	7	72732812	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	18292	72732812	86405851	624	67479											
RFC2	5982	broad.mit.edu	37	chr7	73646355	73646355	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttggctccagcctaaggCggcattttcccccatcagaa	9	13	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73646355	A	A	73646355	1	1	60	0	1	0	0	0	0	0	0	0	13353	783	27	3		3	RFC2	7	73646355	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	913543	73646355	85492308	625	67480											
HIP1	3092	broad.mit.edu	37	chr7	75171376	75171376	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaggcagccaatgccaaTgctctgtggaaacgcctggc	13	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75171376	C	C	75171376	1	2	60	0	1	0	0	0	0	0	0	0	7181	1479	51	5		5	HIP1	7	75171376	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1525021	75171376	83967287	626	67481											
MAGI2	9863	broad.mit.edu	37	chr7	77824488	77824488	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtggacttttcttccagggGatgggtaaaactttggcata	12	6	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77824488	A	A	77824488	1	1	60	0	1	0	0	0	0	0	0	0	9283	1189	41	4		4	MAGI2	7	77824488	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2653112	77824488	81314175	627	67482											
MAGI2	9863	broad.mit.edu	37	chr7	77973371	77973371	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgagcagcgacaatcccAggggtaaatgtggggggtct	15	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77973371	T	T	77973371	1	4	60	0	1	0	0	0	0	0	0	0	9283	203	7	5		5	MAGI2	7	77973371	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	148883	77973371	81165292	628	67483											
HGF	3082	broad.mit.edu	37	chr7	81374430	81374430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccccattgcaggtcatgCattcaactaataaaattaaa	4	10	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81374430	A	A	81374430	3	1	60	1	0	0	0	0	1	0	0	0	7152	710	25	3	1618	3	HGF	7	81374430	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3401059	81374430	77764233	629	67484											
CACNA2D1	781	broad.mit.edu	37	chr7	81601042	81601042	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaatttccacaggagaaaCtaaattgaaatgcagaatac	6	9	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81601042	G	G	81601042	1	3	60	0	1	0	0	0	0	0	0	0	2574	580	20	4		4	CACNA2D1	7	81601042	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	226612	81601042	77537621	630	67485											
CACNA2D1	781	broad.mit.edu	37	chr7	81620548	81620548	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtgtatgtcctgtttccTttgtcaatatatctctagaa	6	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81620548	A	A	81620548	3	1	60	1	0	0	0	0	1	0	0	0	2574	1606	56	5	1602	5	CACNA2D1	7	81620548	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	19506	81620548	77518115	631	67486											
ABCB1	5243	broad.mit.edu	37	chr7	87174081	87174081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctactgtagccctagcccaCcaaactagggaaccacagtt	7	15	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87174081	A	A	87174081	1	1	60	0	1	0	0	0	0	0	0	0	40	522	18	3		3	ABCB1	7	87174081	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5553533	87174081	71964582	632	67487											
TFPI2	7980	broad.mit.edu	37	chr7	93518520	93518520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacactcacttgcagccggCaaactttgggaacttctagg	9	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93518520	A	A	93518520	3	1	60	1	0	0	0	0	1	0	0	0	15932	710	25	3	432	3	TFPI2	7	93518520	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6344439	93518520	65620143	633	67488											
GNGT1	2792	broad.mit.edu	37	chr7	93539994	93539994	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtgtaaagtagagagaatCaaactgaaattatacaacct	8	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93539994	A	A	93539994	1	1	60	0	1	0	0	0	0	0	0	0	6597	841	29	3		3	GNGT1	7	93539994	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	21474	93539994	65598669	634	67489											
DYNC1I1	1780	broad.mit.edu	37	chr7	95457510	95457510	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggagctgttgttgctcttGtgttctccccttttgttgaa	10	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95457510	C	C	95457510	1	2	60	0	1	0	0	0	0	0	0	0	4882	1392	48	4		4	DYNC1I1	7	95457510	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1917516	95457510	63681153	635	67490											
DLX5	1749	broad.mit.edu	37	chr7	96650429	96650429	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacactcagaggtcgcccgCgccttccccggggcggcgac	15	17	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96650429	T	T	96650429	1	4	60	0	1	0	0	0	0	0	0	0	4614	783	27	4		4	DLX5	7	96650429	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1192919	96650429	62488234	636	67491											
LMTK2	22853	broad.mit.edu	37	chr7	97823189	97823189	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacaggagcagcccctacccGagccagtcctccccgagcaa	9	18	0	0	rs142016830	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97823189	T	T	97823189	4	4	60	1	0	0	0	0	0	1	0	0	8933	1059	37	3	3454	3	LMTK2	7	97823189	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1172760	97823189	61315474	637	67492											
ZKSCAN1	7586	broad.mit.edu	37	chr7	99631651	99631651	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatacctgattttgcatcGgagaattcacactcgagaaa	7	10	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99631651	A	A	99631651	3	1	60	1	0	0	0	0	1	0	0	0	17812	1116	39	4	1541	4	ZKSCAN1	7	99631651	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1808462	99631651	59507012	638	67493											
MUC17	140453	broad.mit.edu	37	chr7	100681998	100681998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaccacttctactgaagCcagttcatctcctacaactg	5	14	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100681998	A	A	100681998	3	1	60	1	0	0	0	0	1	0	0	0	10068	739	26	3	7311	3	MUC17	7	100681998	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1050347	100681998	58456665	639	67494											
MUC17	140453	broad.mit.edu	37	chr7	100699664	100699664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgtttacagtttattgGtccaggtgatcctcccaggt	9	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100699664	T	T	100699664	1	4	60	0	1	0	0	0	0	0	0	0	10068	1276	44	3		3	MUC17	7	100699664	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	17666	100699664	58438999	640	67495											
SPDYE2	441273	broad.mit.edu	37	chr7	102194753	102194753	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggggtttggggtcggggtCtaaggtgatcagatgcagaa	18	4	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102194753	A	A	102194753	1	1	60	0	1	0	0	0	0	0	0	0	15146	928	32	3		3	SPDYE2	7	102194753	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1495089	102194753	56943910	641	67496											
RELN	5649	broad.mit.edu	37	chr7	103201971	103201971	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaaggagaatcttatctgTatctgacccctttaaaaatt	8	7	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103201971	C	C	103201971	1	2	60	0	1	0	0	0	0	0	0	0	13328	1653	57	5		5	RELN	7	103201971	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1007218	103201971	55936692	642	67497											
RELN	5649	broad.mit.edu	37	chr7	103314409	103314409	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttcctcctccttcttcttCtcctttttttaatcttggga	3	13	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103314409	A	A	103314409	1	1	60	0	1	0	0	0	0	0	0	0	13328	928	32	3		3	RELN	7	103314409	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	112438	103314409	55824254	643	67498											
NRCAM	4897	broad.mit.edu	37	chr7	107834657	107834657	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccatttggcaaagctggaGaatttgttcaaagtcattta	8	6	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107834657	A	A	107834657	1	1	60	0	1	0	0	0	0	0	0	0	10739	957	33	4		4	NRCAM	7	107834657	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4520248	107834657	51304006	644	67499											
C7orf60	154743	broad.mit.edu	37	chr7	112472727	112472727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttcctgaggcttgtagCaacctaaaaacagatatttt	6	7	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112472727	A	A	112472727	3	1	60	1	0	0	0	0	1	0	0	0	2432	709	25	3	748	3	C7orf60	7	112472727	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4638070	112472727	46665936	645	67500											
PTPRZ1	5803	broad.mit.edu	37	chr7	121659286	121659286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagccctgacttttatctGtctagtggttcttgtgggta	11	8	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121659286	T	T	121659286	3	4	60	1	0	0	0	0	1	0	0	0	12922	1377	48	3	5002	3	PTPRZ1	7	121659286	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	9186559	121659286	37479377	646	67501											
AASS	10157	broad.mit.edu	37	chr7	121773615	121773615	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaaggctgtatcaagacctTgtatcccagattggtgatgc	11	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121773615	C	C	121773615	3	2	60	1	0	0	0	0	1	0	0	0	24	1821	63	5	2706	5	AASS	7	121773615	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	114329	121773615	37365048	647	67502											
CPA4	51200	broad.mit.edu	37	chr7	129950929	129950929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagggtccaggagcctaGgcatgtttcattgaaggtcc	15	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129950929	T	T	129950929	1	4	60	0	1	0	0	0	0	0	0	0	3824	1015	35	2		2	CPA4	7	129950929	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8177314	129950929	29187734	648	67503											
CALD1	800	broad.mit.edu	37	chr7	134618538	134618538	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaagagaaaagggcagcaGaggagaggcagaggataaag	18	3	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134618538	A	A	134618538	3	1	60	1	0	0	0	0	1	0	0	0	2607	943	33	4	1085	4	CALD1	7	134618538	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4667609	134618538	24520125	649	67504											
CHRM2	1129	broad.mit.edu	37	chr7	136700125	136700125	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtaggggtgagaactgtGgaggatggggagtgctacat	18	3	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700125	T	T	136700125	2	4	60	1	0	0	0	0	0	0	0	1	3408	1335	47	2		2	CHRM2	7	136700125	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2081587	136700125	22438538	650	67505											
TRIM24	8805	broad.mit.edu	37	chr7	138262371	138262371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgctattcctatgcatgGtgggtagggtgagagaatct	13	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138262371	T	T	138262371	1	4	60	0	1	0	0	0	0	0	0	0	16622	1276	44	3		3	TRIM24	7	138262371	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1562246	138262371	20876292	651	67506											
CLEC5A	23601	broad.mit.edu	37	chr7	141645882	141645882	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggcattgccaattgacctCaggttgggtcagttagtctc	11	9	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141645882	A	A	141645882	1	1	60	0	1	0	0	0	0	0	0	0	3551	841	29	3		3	CLEC5A	7	141645882	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3383511	141645882	17492781	652	67507											
TRPV6	55503	broad.mit.edu	37	chr7	142569474	142569474	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgcagtcagatctgatattCccagctctccccgtcctcca	6	17	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142569474	A	A	142569474	4	1	60	1	0	0	0	0	0	1	0	0	16725	864	30	3	17	3	TRPV6	7	142569474	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	923592	142569474	16569189	653	67508											
KEL	3792	broad.mit.edu	37	chr7	142649603	142649603	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctcctcaccatgggtGgttgctctgtcagttcccgc	9	16	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142649603	C	C	142649603	3	2	60	1	0	0	0	0	1	0	0	0	8212	1348	47	4	1042	4	KEL	7	142649603	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	80129	142649603	16489060	654	67509											
PIP	5304	broad.mit.edu	37	chr7	142829448	142829448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatggatctcctgccagGttccacttcttgtcctctta	6	15	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142829448	T	T	142829448	1	4	60	0	1	0	0	0	0	0	0	0	12030	1276	44	3		3	PIP	7	142829448	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	179845	142829448	16309215	655	67510											
EPHA1	2041	broad.mit.edu	37	chr7	143088546	143088546	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcatggggtgagaggaGggatcagtccttgaatccct	16	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143088546	C	C	143088546	1	2	60	0	1	0	0	0	0	0	0	0	5207	1015	35	4		4	EPHA1	7	143088546	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	259098	143088546	16050117	656	67511											
EPHA1	2041	broad.mit.edu	37	chr7	143098639	143098639	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctctgcgtccttgcatTgggcagtcctggtacatgta	12	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143098639	A	A	143098639	2	1	60	1	0	0	0	0	0	0	0	1	5207	1799	63	5		5	EPHA1	7	143098639	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	10093	143098639	16040024	657	67512											
PDIA4	9601	broad.mit.edu	37	chr7	148708856	148708856	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccccctaatggatgtcCcaggagctttctgaaaaacc	7	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148708856	A	A	148708856	1	1	60	0	1	0	0	0	0	0	0	0	11764	638	22	2		2	PDIA4	7	148708856	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5610217	148708856	10429807	658	67513											
ABP1	26	broad.mit.edu	37	chr7	150558060	150558060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctgggtgacggtgggcttCctgcacatcccccactcaga	12	15	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150558060	A	A	150558060	3	1	60	1	0	0	0	0	1	0	0	0	98	854	30	3	2033	3	ABP1	7	150558060	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1849204	150558060	8580603	659	67514											
MLL3	58508	broad.mit.edu	37	chr7	151949531	151949531	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcagtactgatggaattgCtagagtgataaaaacttaga	9	4	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151949531	T	T	151949531	1	4	60	0	1	0	0	0	0	0	0	0	9715	812	28	4		4	MLL3	7	151949531	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1391471	151949531	7189132	660	67515											
MLL3	58508	broad.mit.edu	37	chr7	152055719	152055719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctccagcccatccatgCtgtcctcatcttccactgca	5	17	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152055719	A	A	152055719	3	1	60	1	0	0	0	0	1	0	0	0	9715	797	28	3	14764	3	MLL3	7	152055719	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	106188	152055719	7082944	661	67516											
DPP6	1804	broad.mit.edu	37	chr7	154544610	154544610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtggctctagtgaacgGgatttccaccttagattctg	13	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154544610	T	T	154544610	1	4	60	0	1	0	0	0	0	0	0	0	4770	1247	43	2		2	DPP6	7	154544610	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2488891	154544610	4594053	662	67517											
CSMD1	64478	broad.mit.edu	37	chr8	2910157	2910157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctggggattctgggattCcacaggacacagctgaaaag	12	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2910157	A	A	2910157	3	1	60	1	0	0	0	0	1	0	0	0	3978	855	30	3	3291	3	CSMD1	8	2910157	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08		2910157	143453865	663	67518											
CSMD1	64478	broad.mit.edu	37	chr8	3000201	3000201	+	Intron	DEL	G	-	-													aactgaatatgtgcacctatGgaaaaacatgcaaacttaat							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3000201	-	-	3000201	6	5	60	0	1	1	0	1	0	0	0	0	3978	1363	47	0		0	CSMD1	8	3000201	Intron	DEL	G	TCGA-17-Z030-01A-01W-0746-08	90044	3000201	143363821	664	67519											
CSMD1	64478	broad.mit.edu	37	chr8	3265390	3265390	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtaagtaaaatgagaacTtggatgtgttgactgtgtgg	13	3	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3265390	A	A	3265390	1	1	60	0	1	0	0	0	0	0	0	0	3978	1624	56	5		5	CSMD1	8	3265390	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	265189	3265390	143098632	665	67520											
CSMD1	64478	broad.mit.edu	37	chr8	4368305	4368305	+	Intron	SNP	T	C	C													cctctcttccttcccctttcTcttccttcccctttcccttc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4368305	C	C	4368305	1	2	60	0	1	0	0	0	0	0	0	0	3978	1566	54	5		5	CSMD1	8	4368305	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1102915	4368305	141995717	666	67521	310	2									
CSMD1	64478	broad.mit.edu	37	chr8	4368309	4368309	+	Intron	SNP	C	A	A													tcttccttcccctttctcttCcttcccctttcccttccctt							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4368309	A	A	4368309	1	1	60	0	1	0	0	0	0	0	0	0	3978	870	30	3		3	CSMD1	8	4368309	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4	4368309	141995713	667	67522	310	2									
RP1L1	94137	broad.mit.edu	37	chr8	10467409	10467409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggacgcttccttcttctGgaagtccttcctctttgaga	9	12	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467409	T	T	10467409	3	4	60	1	0	0	0	0	1	0	0	0	13644	1348	47	2	3007	2	RP1L1	8	10467409	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6099100	10467409	135896613	668	67523											
RP1L1	94137	broad.mit.edu	37	chr8	10467546	10467546	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaatttcctctaactgCgcctcttcttcttgctgtcc	4	15	6	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467546	T	T	10467546	2	4	60	1	0	0	0	0	0	0	0	1	13644	755	27	4		4	RP1L1	8	10467546	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	137	10467546	135896476	669	67524											
SGCZ	137868	broad.mit.edu	37	chr8	14157875	14157875	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcggggagaaaggaaggaaGagagggagggaggaagggaa	23	1	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14157875	T	T	14157875	1	4	60	0	1	0	0	0	0	0	0	0	14317	957	33	3		3	SGCZ	8	14157875	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3690329	14157875	132206147	670	67525											
SGCZ	137868	broad.mit.edu	37	chr8	14412203	14412203	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagctagattgtctctgaaCcaagagcaataagatgtaaa	9	6	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14412203	G	G	14412203	1	3	60	0	1	0	0	0	0	0	0	0	14317	522	18	4		4	SGCZ	8	14412203	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	254328	14412203	131951819	671	67526											
PDGFRL	5157	broad.mit.edu	37	chr8	17447231	17447231	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggagtagaattgggtggAgctaccctgcgtatctggac	15	7	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17447231	T	T	17447231	3	4	60	1	0	0	0	0	1	0	0	0	11757	304	11	5	316	5	PDGFRL	8	17447231	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3035028	17447231	128916791	672	67527											
SLC25A37	51312	broad.mit.edu	37	chr8	23428995	23428995	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccccttccagtccatccActtcatcacctatgagttcc	3	18	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23428995	T	T	23428995	3	4	60	1	0	0	0	0	1	0	0	0	14615	159	6	5	658	5	SLC25A37	8	23428995	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	5981764	23428995	122935027	673	67528											
STC1	6781	broad.mit.edu	37	chr8	23702417	23702417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagctcgtgggtgtgtttGggcacagtggtctgtctgca	16	8	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23702417	T	T	23702417	3	4	60	1	0	0	0	0	1	0	0	0	15393	1357	47	2	137	2	STC1	8	23702417	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	273422	23702417	122661605	674	67529											
KCTD9	54793	broad.mit.edu	37	chr8	25292931	25292931	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagatttgcacagcaaagaTttgcatgtgcaagattacag	9	7	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25292931	C	C	25292931	3	2	60	1	0	0	0	0	1	0	0	0	8186	1493	52	5	424	5	KCTD9	8	25292931	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1590514	25292931	121071091	675	67530											
STMN4	81551	broad.mit.edu	37	chr8	27098753	27098753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttccatgtcggaaatgaCgcaccaattcaggtccaccg	9	13	1	1	rs143115752		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27098753	A	A	27098753	3	1	60	1	0	0	0	0	1	0	0	0	15429	536	19	3	445	3	STMN4	8	27098753	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1805822	27098753	119265269	676	67531											
TEX15	56154	broad.mit.edu	37	chr8	30701798	30701798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggtttcagagtgggcaGgtaaaataggcgtatgatta	13	4	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30701798	T	T	30701798	3	4	60	1	0	0	0	0	1	0	0	0	15901	1000	35	2	3649	2	TEX15	8	30701798	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3603045	30701798	115662224	677	67532											
TEX15	56154	broad.mit.edu	37	chr8	30703672	30703672	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggataatgaagagaaacaCtcagatgagtcttgactggt	12	5	2	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30703672	T	T	30703672	2	4	60	1	0	0	0	0	0	0	0	1	15901	564	20	4		4	TEX15	8	30703672	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1874	30703672	115660350	678	67533											
ADAM2	2515	broad.mit.edu	37	chr8	39618754	39618754	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtttccagatacatcagtCtttgaattaaggtgagaata	8	6	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39618754	A	A	39618754	3	1	60	1	0	0	0	0	1	0	0	0	241	912	32	3	677	3	ADAM2	8	39618754	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	8915082	39618754	106745268	679	67534											
CHRNA6	8973	broad.mit.edu	37	chr8	42611872	42611872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtgatatccatagggcagGaactcttaaaaatagctggt	11	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42611872	A	A	42611872	3	1	60	1	0	0	0	0	1	0	0	0	3418	1174	41	4	1022	4	CHRNA6	8	42611872	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2993118	42611872	103752150	680	67535											
SNTG1	54212	broad.mit.edu	37	chr8	51705341	51705341	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatcaagctactgcttcTactgctgccagctctgctac	8	14	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51705341	A	A	51705341	2	1	60	1	0	0	0	0	0	0	0	1	14988	1509	53	5		5	SNTG1	8	51705341	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	9093469	51705341	94658681	681	67536											
PXDNL	137902	broad.mit.edu	37	chr8	52370307	52370307	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagactgagaatatagtacTatatagctatgtttcatgtc	7	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52370307	G	G	52370307	1	3	60	0	1	0	0	0	0	0	0	0	12956	1537	53	5		5	PXDNL	8	52370307	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	664966	52370307	93993715	682	67537											
ST18	9705	broad.mit.edu	37	chr8	53084629	53084629	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattgccatccaggggttcTgcgagagcattctgcgggtc	14	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53084629	C	C	53084629	2	2	60	1	0	0	0	0	0	0	0	1	15330	1567	55	5		5	ST18	8	53084629	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	714322	53084629	93279393	683	67538											
RB1CC1	9821	broad.mit.edu	37	chr8	53547561	53547561	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaagagacctgtggtttatCcttgtacctactcaaataaa	6	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53547561	A	A	53547561	1	1	60	0	1	0	0	0	0	0	0	0	13207	870	30	3		3	RB1CC1	8	53547561	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	462932	53547561	92816461	684	67539											
NPBWR1	2831	broad.mit.edu	37	chr8	53852876	53852876	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcgccgaccgctacctgGtggtgttggccactgcggag	16	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53852876	A	A	53852876	3	1	60	1	0	0	0	0	1	0	0	0	10663	1261	44	4	411	4	NPBWR1	8	53852876	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	305315	53852876	92511146	685	67540											
RP1	6101	broad.mit.edu	37	chr8	55534164	55534164	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcgttctgggggctcctcGagcctgagctcattttgagc	14	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55534164	T	T	55534164	1	4	60	0	1	0	0	0	0	0	0	0	13643	1073	37	3		3	RP1	8	55534164	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1681288	55534164	90829858	686	67541											
PENK	5179	broad.mit.edu	37	chr8	57358389	57358389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcaccaggaagttgatgtCggccgggcgcactaggcggt	15	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57358389	A	A	57358389	3	1	60	1	0	0	0	0	1	0	0	0	11821	884	31	3	687	3	PENK	8	57358389	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1824225	57358389	89005633	687	67542											
NKAIN3	286183	broad.mit.edu	37	chr8	63191352	63191352	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcattgatggacatttagGttggttccaagtcttttcta	8	6	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63191352	A	A	63191352	1	1	60	0	1	0	0	0	0	0	0	0	10532	1276	44	4		4	NKAIN3	8	63191352	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5832963	63191352	83172670	688	67543											
NKAIN3	286183	broad.mit.edu	37	chr8	63831057	63831057	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtgatcagtatttccatgGaagaagaagacacatgtaag	10	5	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63831057	T	T	63831057	4	4	60	1	0	0	0	0	0	1	0	0	10532	1175	41	3	535	3	NKAIN3	8	63831057	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	639705	63831057	82532965	689	67544											
ADHFE1	137872	broad.mit.edu	37	chr8	67366010	67366010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccttcctggagtggccCtcgccatccagggaccagcg	13	16	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67366010	A	A	67366010	1	1	60	0	1	0	0	0	0	0	0	0	314	696	24	2		2	ADHFE1	8	67366010	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3534953	67366010	78998012	690	67545											
CSPP1	79848	broad.mit.edu	37	chr8	68030981	68030981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttttttctttaagatgGttcaggaatgatgggcgtac	11	4	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68030981	T	T	68030981	3	4	60	1	0	0	0	0	1	0	0	0	3996	1261	44	3	1770	3	CSPP1	8	68030981	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	664971	68030981	78333041	691	67546											
SULF1	23213	broad.mit.edu	37	chr8	70488290	70488290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgtgactacacccatGtgctgcccgtcacggtcctc	9	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70488290	T	T	70488290	3	4	60	1	0	0	0	0	1	0	0	0	15488	1377	48	3	264	3	SULF1	8	70488290	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2457309	70488290	75875732	692	67547											
EYA1	2138	broad.mit.edu	37	chr8	72129059	72129059	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcactggttgctgcagcagGaaagccatctgttccaaagt	11	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72129059	C	C	72129059	3	2	60	1	0	0	0	0	1	0	0	0	5371	1174	41	4	570	4	EYA1	8	72129059	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1640769	72129059	74234963	693	67548											
TRPA1	8989	broad.mit.edu	37	chr8	72965846	72965846	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttgattcatacttcacctCaagaatccacttgctaaaca	3	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72965846	A	A	72965846	1	1	60	0	1	0	0	0	0	0	0	0	16702	841	29	3		3	TRPA1	8	72965846	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	836787	72965846	73398176	694	67549											
FAM164A	51101	broad.mit.edu	37	chr8	79627400	79627400	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcatgtgaataggtaatttGagaaatacatgctcactgtt	9	5	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79627400	T	T	79627400	1	4	60	0	1	0	0	0	0	0	0	0	5523	1305	45	3		3	FAM164A	8	79627400	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6661554	79627400	66736622	695	67550											
CHMP4C	92421	broad.mit.edu	37	chr8	82667719	82667720	+	Splice_Site	DNP	GG	TT	TT													tttggtgatgactttgatgaGgtacgtaacccaatatgaag							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	82667720	TT	TT	82667719	5	4	60	1	0	0	0	0	0	0	1	0	3389	1014	35	2	493	2	CHMP4C	8	82667719	Splice_Site	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	3040319	82667719	63696303	696	67551											
CA3	761	broad.mit.edu	37	chr8	86357417	86357417	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatggcgagttccagattttCcttgatgcattggacaagat	10	7	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86357417	T	T	86357417	2	4	60	1	0	0	0	0	0	0	0	1	2543	854	30	4		4	CA3	8	86357417	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3689698	86357417	60006605	697	67552											
PSKH2	85481	broad.mit.edu	37	chr8	87060979	87060979	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaagtccttcgccaagtgGgaaatgcttggccaaggctg	12	9	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87060979	A	A	87060979	2	1	60	1	0	0	0	0	0	0	0	1	12771	1219	43	4		4	PSKH2	8	87060979	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	703562	87060979	59303043	698	67553											
CNGB3	54714	broad.mit.edu	37	chr8	87644857	87644857	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcaactcattaaaatagaaGaaagttagttcaaaaaaaga	5	4	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87644857	T	T	87644857	1	4	60	0	1	0	0	0	0	0	0	0	3633	957	33	3		3	CNGB3	8	87644857	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	583878	87644857	58719165	699	67554											
MMP16	4325	broad.mit.edu	37	chr8	89339535	89339535	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaaaaaaagtcctccggGtgggtaaggagcctgcaggt	13	8	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89339535	T	T	89339535	1	4	60	0	1	0	0	0	0	0	0	0	9748	1276	44	3		3	MMP16	8	89339535	5'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1694678	89339535	57024487	700	67555											
OTUD6B	51633	broad.mit.edu	37	chr8	92090719	92090719	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagacagttagaaattaaaCagattccatctgatggccac	7	9	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92090719	G	G	92090719	3	3	60	1	0	0	0	0	1	0	0	0	11411	479	17	4	555	4	OTUD6B	8	92090719	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2751184	92090719	54273303	701	67556											
SLC26A7	115111	broad.mit.edu	37	chr8	92330587	92330587	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaaatgccatatatatcCggaccacttggattctttta	6	8	1	1	rs147941350		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92330587	A	A	92330587	2	1	60	1	0	0	0	0	0	0	0	1	14636	639	23	1		1	SLC26A7	8	92330587	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	239868	92330587	54033435	702	67557											
RUNX1T1	862	broad.mit.edu	37	chr8	92988199	92988199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggaattcccgatgcgCgtctatgaaaaggatgggaa	14	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92988199	A	A	92988199	3	1	60	1	0	0	0	0	1	0	0	0	13858	768	27	3	544	3	RUNX1T1	8	92988199	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	657612	92988199	53375823	703	67558											
ESRP1	54845	broad.mit.edu	37	chr8	95680241	95680241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattgtccgcatgcggggGctccctttcacggccacagc	12	15	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95680241	T	T	95680241	2	4	60	1	0	0	0	0	0	0	0	1	5300	1190	42	3		3	ESRP1	8	95680241	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2692042	95680241	50683781	704	67559											
C8orf37	157657	broad.mit.edu	37	chr8	96271983	96271983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttataaaacagattgatgTgaagatgataactacatttt	6	5	0	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96271983	C	C	96271983	1	2	60	0	1	0	0	0	0	0	0	0	2449	1711	59	5		5	C8orf37	8	96271983	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	591742	96271983	50092039	705	67560											
SDC2	6383	broad.mit.edu	37	chr8	97620541	97620541	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttccttaaatcaatgtaatCtttccctgtttcccatacca	2	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97620541	T	T	97620541	1	4	60	0	1	0	0	0	0	0	0	0	14065	928	32	4		4	SDC2	8	97620541	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1348558	97620541	48743481	706	67561											
VPS13B	157680	broad.mit.edu	37	chr8	100149106	100149106	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcttctagtactttggggAgtggtttaattttaacatca	8	5	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100149106	T	T	100149106	1	4	60	0	1	0	0	0	0	0	0	0	17317	319	11	5		5	VPS13B	8	100149106	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2528565	100149106	46214916	707	67562											
UBR5	51366	broad.mit.edu	37	chr8	103298029	103298029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctataaggaaaaaggacaaCcacaatgagctaatgtcagt	9	7	1	1	rs146117297	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103298029	A	A	103298029	1	1	60	0	1	0	0	0	0	0	0	0	17031	522	18	3		3	UBR5	8	103298029	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3148923	103298029	43065993	708	67563											
RIMS2	9699	broad.mit.edu	37	chr8	104671991	104671991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagcacacagtgacctaGgagtccaggccagatcaaca	10	13	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104671991	T	T	104671991	1	4	60	0	1	0	0	0	0	0	0	0	13479	1015	35	2		2	RIMS2	8	104671991	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1373962	104671991	41692031	709	67564											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457307	110457307	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgcctgcccagtgccagGgaaactgcaccttttcatac	10	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110457307	T	T	110457307	4	4	60	1	0	0	0	0	0	1	0	0	12067	1233	43	2	5359	2	PKHD1L1	8	110457307	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5785316	110457307	35906715	710	67565											
CSMD3	114788	broad.mit.edu	37	chr8	113812550	113812550	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagatgggttattaaaacatCctctgcatacaaattataag	7	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113812550	T	T	113812550	1	4	60	0	1	0	0	0	0	0	0	0	3980	870	30	4		4	CSMD3	8	113812550	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3355243	113812550	32551472	711	67566											
CSMD3	114788	broad.mit.edu	37	chr8	113933900	113933900	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccaagcagcaaaaacttcaGctatccgttgacaggtgatg	9	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113933900	C	C	113933900	3	2	60	1	0	0	0	0	1	0	0	0	3980	971	34	4	9782	4	CSMD3	8	113933900	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	121350	113933900	32430122	712	67567											
UTP23	84294	broad.mit.edu	37	chr8	117783699	117783699	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttcttttaaataggatcAgaatttgtctgtgaaagtaa	8	3	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117783699	G	G	117783699	3	3	60	1	0	0	0	0	1	0	0	0	17227	188	7	5	378	5	UTP23	8	117783699	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3849799	117783699	28580323	713	67568											
FAM83A	84985	broad.mit.edu	37	chr8	124204261	124204261	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatattagcccagataggAtagtctatgcaatagtaaca	7	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124204261	G	G	124204261	1	3	60	0	1	0	0	0	0	0	0	0	5686	348	12	5		5	FAM83A	8	124204261	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	6420562	124204261	22159761	714	67569											
FER1L6	654463	broad.mit.edu	37	chr8	125015438	125015438	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgattgatggaggatcCcatcatgggagtaagaagtc	12	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125015438	A	A	125015438	2	1	60	1	0	0	0	0	0	0	0	1	5872	610	22	2		2	FER1L6	8	125015438	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	811177	125015438	21348584	715	67570											
FER1L6	654463	broad.mit.edu	37	chr8	125113448	125113448	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttccctttcagtatctccCagctgagaagcaaatggtca	8	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125113448	G	G	125113448	3	3	60	1	0	0	0	0	1	0	0	0	5872	594	21	4	5140	4	FER1L6	8	125113448	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	98010	125113448	21250574	716	67571											
FER1L6	654463	broad.mit.edu	37	chr8	125131012	125131012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattctccaacttggtaaCacttctagaaggttgccatt	8	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125131012	A	A	125131012	1	1	60	0	1	0	0	0	0	0	0	0	5872	493	17	3		3	FER1L6	8	125131012	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	17564	125131012	21233010	717	67572											
KIAA0196	9897	broad.mit.edu	37	chr8	126056113	126056113	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaatcttctgtgttttgGcaatggcggaaaaataaatt	8	6	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126056113	A	A	126056113	3	1	60	1	0	0	0	0	1	0	0	0	8231	1203	42	4	703	4	KIAA0196	8	126056113	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	925101	126056113	20307909	718	67573											
ASAP1	50807	broad.mit.edu	37	chr8	131136347	131136347	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtttcctacattcttggCcagctgtaacagaaaaaaca	6	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131136347	G	G	131136347	3	3	60	1	0	0	0	0	1	0	0	0	1014	739	26	4	1922	4	ASAP1	8	131136347	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5080234	131136347	15227675	719	67574											
LRRC6	23639	broad.mit.edu	37	chr8	133637539	133637539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatttttcctgtttcttcCgttgtttttccatgtgtcta	5	8	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133637539	A	A	133637539	3	1	60	1	0	0	0	0	1	0	0	0	9103	652	23	1	613	1	LRRC6	8	133637539	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2501192	133637539	12726483	720	67575											
TG	7038	broad.mit.edu	37	chr8	133975529	133975529	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaaagtaaggcaaaatcActgcaaattcataagtgtta	7	6	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133975529	T	T	133975529	1	4	60	0	1	0	0	0	0	0	0	0	15936	174	6	5		5	TG	8	133975529	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	337990	133975529	12388493	721	67576											
TG	7038	broad.mit.edu	37	chr8	133984889	133984889	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagcttgggaattcagatGtgcagtgaggagaatggagg	16	4	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133984889	A	A	133984889	3	1	60	1	0	0	0	0	1	0	0	0	15936	1377	48	4	6236	4	TG	8	133984889	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	9360	133984889	12379133	722	67577											
FAM135B	51059	broad.mit.edu	37	chr8	139489309	139489309	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtggaacctgaaccatcCaatatacatcgtccttcctt	5	13	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139489309	T	T	139489309	1	4	60	0	1	0	0	0	0	0	0	0	5495	609	21	4		4	FAM135B	8	139489309	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5504420	139489309	6874713	723	67578											
COL22A1	169044	broad.mit.edu	37	chr8	139636168	139636168	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggcagtgtctcaacggAcagaattgttctgatttcct	9	9	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139636168	C	C	139636168	1	2	60	0	1	0	0	0	0	0	0	0	3713	290	10	5		5	COL22A1	8	139636168	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	146859	139636168	6727854	724	67579											
COL22A1	169044	broad.mit.edu	37	chr8	139808869	139808870	+	Intron	DNP	TG	CT	CT													gtctccaccttctctctttcTgctgagtacagtacatgctt							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	139808870	CT	CT	139808869	1	2	60	0	1	0	0	0	0	0	0	0	3713	1595	55	5		5	COL22A1	8	139808869	Intron	DNP	TG	TCGA-17-Z030-01A-01W-0746-08	172701	139808869	6555153	725	67580											
TSTA3	7264	broad.mit.edu	37	chr8	144698596	144698596	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacagccaagcacacccaGgccaggccagccacctggca	9	18	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144698596	A	A	144698596	1	1	60	0	1	0	0	0	0	0	0	0	16799	1015	35	4		4	TSTA3	8	144698596	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4889727	144698596	1665426	726	67581											
ZNF251	90987	broad.mit.edu	37	chr8	145947717	145947717	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacaagagtggaactccgaCgaaaggctttgccgcactca	11	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145947717	T	T	145947717	3	4	60	1	0	0	0	0	1	0	0	0	17922	536	19	4	691	4	ZNF251	8	145947717	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1249121	145947717	416305	727	67582											
DMRT3	58524	broad.mit.edu	37	chr9	990261	990262	+	Nonsense_Mutation	DNP	GG	AT	AT													gacagccccaagtgtcacgcGgagcagaatcacctcctgat							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	990262	AT	AT	990261	4	1	60	1	0	0	0	0	0	1	0	0	4627	1103	39	4	681	4	DMRT3	9	990261	Nonsense_Mutation	DNP	GG	TCGA-17-Z030-01A-01W-0746-08		990261	140223170	728	67583											
VLDLR	7436	broad.mit.edu	37	chr9	2639783	2639783	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcaaaacatgccaaaatgCagtatgagccctcatgtgaa	9	9	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2639783	G	G	2639783	1	3	60	0	1	0	0	0	0	0	0	0	17301	725	25	4		4	VLDLR	9	2639783	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1649522	2639783	138573648	729	67584											
GLDC	2731	broad.mit.edu	37	chr9	6553357	6553357	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacacctgcacatactcCcaggcctcaccttgatataa	5	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6553357	T	T	6553357	1	4	60	0	1	0	0	0	0	0	0	0	6497	638	22	4		4	GLDC	9	6553357	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3913574	6553357	134660074	730	67585											
PTPRD	5789	broad.mit.edu	37	chr9	8493159	8493159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttcatgctgatatcgaaGgggcatcttcaggcatcttg	11	8	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8493159	A	A	8493159	1	1	60	0	1	0	0	0	0	0	0	0	12907	1015	35	4		4	PTPRD	9	8493159	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1939802	8493159	132720272	731	67586											
FREM1	158326	broad.mit.edu	37	chr9	14846067	14846067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaagtgatggctcgagaCtgcccctcaaggagactcag	11	13	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14846067	A	A	14846067	3	1	60	1	0	0	0	0	1	0	0	0	6104	564	20	3	5425	3	FREM1	9	14846067	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6352908	14846067	126367364	732	67587											
KIAA1797	54914	broad.mit.edu	37	chr9	20926452	20926452	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgatcagaaaactcAagaattgactcttatgacat	5	6	3	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20926452	T	T	20926452	1	4	60	0	1	0	0	0	0	0	0	0	8328	145	5	5		5	KIAA1797	9	20926452	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	6080385	20926452	120286979	733	67588											
IFNA14	3448	broad.mit.edu	37	chr9	21209379	21209379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtagggccccaaacaccCccacagattcttcctctcct	6	17	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21209379	A	A	21209379	1	1	60	0	1	0	0	0	0	0	0	0	7604	638	22	2		2	IFNA14	9	21209379	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	282927	21209379	120004052	734	67589											
CDKN2A	1029	broad.mit.edu	37	chr9	21971000	21971000	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacatcgcgatggcccagctCctcagccaggtccacgggca	12	16	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21971000	A	A	21971000	4	1	60	1	0	0	0	0	0	1	0	0	3191	864	30	3	120	3	CDKN2A	9	21971000	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	761621	21971000	119242431	735	67590											
AQP7	364	broad.mit.edu	37	chr9	33402119	33402119	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccatctctgctctaccGctggtcctcccaacaaccaa	5	19	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33402119	A	A	33402119	1	1	60	0	1	0	0	0	0	0	0	0	833	1102	38	4		4	AQP7	9	33402119	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	11431119	33402119	107811312	736	67591											
OR2S2	56656	broad.mit.edu	37	chr9	35957729	35957729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgcagatggccacatagcGatcaaatgccatcatgctca	9	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35957729	T	T	35957729	3	4	60	1	0	0	0	0	1	0	0	0	11109	1058	37	3	596	3	OR2S2	9	35957729	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2555610	35957729	105255702	737	67592											
PAX5	5079	broad.mit.edu	37	chr9	36846906	36846906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atactgagggtggctgtaggGactcccggaaaactcactcc	12	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36846906	T	T	36846906	3	4	60	1	0	0	0	0	1	0	0	0	11576	1174	41	3	150	3	PAX5	9	36846906	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	889177	36846906	104366525	738	67593											
PAX5	5079	broad.mit.edu	37	chr9	36942390	36942390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttacacttgcttcacagGcaaaatgggaatcatagcgt	10	9	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36942390	T	T	36942390	1	4	60	0	1	0	0	0	0	0	0	0	11576	1218	42	3		3	PAX5	9	36942390	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	95484	36942390	104271041	739	67594											
PAX5	5079	broad.mit.edu	37	chr9	37020659	37020659	+	Missense_Mutation	SNP	A	T	T													agaattttgctgacacaaccAtggctgacccgaagctgcct							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37020659	T	T	37020659	3	4	60	1	0	0	0	0	1	0	0	0	11576	214	8	5	1025	5	PAX5	9	37020659	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	78269	37020659	104192772	740	67595	311	2									
PAX5	5079	broad.mit.edu	37	chr9	37020661	37020661	+	Missense_Mutation	SNP	G	T	T													aattttgctgacacaaccatGgctgacccgaagctgcctgg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37020661	T	T	37020661	3	4	60	1	0	0	0	0	1	0	0	0	11576	1348	47	2	1027	2	PAX5	9	37020661	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2	37020661	104192770	741	67596	311	2									
ZNF658	26149	broad.mit.edu	37	chr9	40773252	40773252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgaattctctgatgtgCtctcagggctgaattgtagg	13	6	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40773252	A	A	40773252	3	1	60	1	0	0	0	0	1	0	0	0	18196	797	28	3	1160	3	ZNF658	9	40773252	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3752591	40773252	100440179	742	67597											
PIP5K1B	8395	broad.mit.edu	37	chr9	71509364	71509364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaacaacgttttgccacGctccatgagaatgcacttta	8	10	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71509364	T	T	71509364	3	4	60	1	0	0	0	0	1	0	0	0	12035	1087	38	3	599	3	PIP5K1B	9	71509364	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	30736112	71509364	69704067	743	67598											
TRPM3	80036	broad.mit.edu	37	chr9	73408554	73408554	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactctgcttgctctaaggCagtcttcacctgtcttttat	6	13	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73408554	T	T	73408554	1	4	60	0	1	0	0	0	0	0	0	0	16712	725	25	4		4	TRPM3	9	73408554	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1899190	73408554	67804877	744	67599											
ALDH1A1	216	broad.mit.edu	37	chr9	75540601	75540601	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaatccaacttccatattaTacaccccctgtagatgttat	3	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75540601	A	A	75540601	1	1	60	0	1	0	0	0	0	0	0	0	490	1421	49	5		5	ALDH1A1	9	75540601	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2132047	75540601	65672830	745	67600											
VPS13A	23230	broad.mit.edu	37	chr9	79867358	79867358	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taactgactcttccttgtgtGtgtggtgaaatgtatataac	9	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79867358	A	A	79867358	1	1	60	0	1	0	0	0	0	0	0	0	17316	1392	48	4		4	VPS13A	9	79867358	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4326757	79867358	61346073	746	67601											
NTRK2	4915	broad.mit.edu	37	chr9	87549124	87549124	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttctgaaaagggagctaGgcgaaggagcctttggaaaa	14	5	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87549124	A	A	87549124	3	1	60	1	0	0	0	0	1	0	0	0	10802	1000	35	4	1810	4	NTRK2	9	87549124	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7681766	87549124	53664307	747	67602											
FAM120A	23196	broad.mit.edu	37	chr9	96289347	96289347	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaaagtattgttattatGagcctgaagacttagctgag	9	4	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96289347	T	T	96289347	1	4	60	0	1	0	0	0	0	0	0	0	5461	1305	45	3		3	FAM120A	9	96289347	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8740223	96289347	44924084	748	67603											
KIAA1529	57653	broad.mit.edu	37	chr9	100053562	100053562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgtgccagggtgtctggCgggaggagggtagagggtgg	23	5	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100053562	A	A	100053562	1	1	60	0	1	0	0	0	0	0	0	0	8310	783	27	3		3	KIAA1529	9	100053562	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3764215	100053562	41159869	749	67604											
TBC1D2	55357	broad.mit.edu	37	chr9	100965844	100965844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatttgtgctcctggcaCctggggtgagataaacgctc	12	11	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100965844	A	A	100965844	1	1	60	0	1	0	0	0	0	0	0	0	15727	522	18	3		3	TBC1D2	9	100965844	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	912282	100965844	40247587	750	67605											
TBC1D2	55357	broad.mit.edu	37	chr9	100995870	100995870	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggagcatgaggctgaacCctgcctttctgcccttctgt	11	12	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100995870	A	A	100995870	1	1	60	0	1	0	0	0	0	0	0	0	15727	638	22	2		2	TBC1D2	9	100995870	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	30026	100995870	40217561	751	67606											
COL15A1	1306	broad.mit.edu	37	chr9	101788230	101788230	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggagccaccggccttccCgggatgaaaggggagaaggt	17	9	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101788230	A	A	101788230	2	1	60	1	0	0	0	0	0	0	0	1	3704	639	23	1		1	COL15A1	9	101788230	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	792360	101788230	39425201	752	67607											
INVS	27130	broad.mit.edu	37	chr9	102988411	102988411	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcaaaaggatctggaagAgatgactcctttgcacttga	11	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102988411	T	T	102988411	3	4	60	1	0	0	0	0	1	0	0	0	7857	304	11	5	351	5	INVS	9	102988411	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1200181	102988411	38225020	753	67608											
SLC44A1	23446	broad.mit.edu	37	chr9	108098079	108098079	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaattatcaaggaaccttaGataattgaagtaattttgga	7	3	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108098079	C	C	108098079	1	2	60	0	1	0	0	0	0	0	0	0	14749	957	33	4		4	SLC44A1	9	108098079	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5109668	108098079	33115352	754	67609											
MUSK	4593	broad.mit.edu	37	chr9	113510084	113510084	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccatcagcatagcaggtaGgatgccccttcacatttgcg	9	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113510084	C	C	113510084	3	2	60	1	0	0	0	0	1	0	0	0	10083	1014	35	4	977	4	MUSK	9	113510084	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5412005	113510084	27703347	755	67610											
C9orf80	58493	broad.mit.edu	37	chr9	115456525	115456525	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaaacctaaaaaaaagAggggaataggagaaaaggga	12	2	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115456525	G	G	115456525	1	3	60	0	1	0	0	0	0	0	0	0	2524	319	11	5		5	C9orf80	9	115456525	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1946441	115456525	25756906	756	67611											
TNC	3371	broad.mit.edu	37	chr9	117826313	117826313	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcatcccagcccacctcGgccaccacgacctctcccaa	7	21	1	0	rs139061925		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117826313	T	T	117826313	2	4	60	1	0	0	0	0	0	0	0	1	16393	1103	39	1		1	TNC	9	117826313	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2369788	117826313	23387118	757	67612											
ASTN2	23245	broad.mit.edu	37	chr9	119976722	119976722	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgccaaactcgtcctcGcgggagacatggttggcccg	14	13	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119976722	T	T	119976722	2	4	60	1	0	0	0	0	0	0	0	1	1069	1074	38	3		3	ASTN2	9	119976722	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2150409	119976722	21236709	758	67613											
DBC1	1620	broad.mit.edu	37	chr9	121929281	121929281	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttacaaatttttgtggGtttttttgttttgttttgct	7	3	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121929281	T	T	121929281	1	4	60	0	1	0	0	0	0	0	0	0	4280	1276	44	3		3	DBC1	9	121929281	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1952559	121929281	19284150	759	67614											
C5	727	broad.mit.edu	37	chr9	123776408	123776408	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgataacatctcaggcttaGaaggaatctcaagggatacc	10	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123776408	T	T	123776408	1	4	60	0	1	0	0	0	0	0	0	0	2303	957	33	3		3	C5	9	123776408	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1847127	123776408	17437023	760	67615											
NDUFA8	4702	broad.mit.edu	37	chr9	124914641	124914641	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggcttatcacattgagctCcatagtgatgggccgcagct	12	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124914641	T	T	124914641	3	4	60	1	0	0	0	0	1	0	0	0	10366	855	30	4	432	4	NDUFA8	9	124914641	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1138233	124914641	16298790	761	67616											
GOLGA2	2801	broad.mit.edu	37	chr9	131019257	131019257	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttgctactgtaagggtaAagggttgactgagaagggat	15	4	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131019257	C	C	131019257	1	2	60	0	1	0	0	0	0	0	0	0	6616	29	1	5		5	GOLGA2	9	131019257	3'UTR	SNP	A	TCGA-17-Z030-01A-01W-0746-08	6104616	131019257	10194174	762	67617											
COL5A1	1289	broad.mit.edu	37	chr9	137693824	137693824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaaggcaagaccggccctCcaggcccccccggcgtggtc	12	19	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137693824	A	A	137693824	3	1	60	1	0	0	0	0	1	0	0	0	3728	855	30	3	3127	3	COL5A1	9	137693824	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6674567	137693824	3519607	763	67618											
LCN9	392399	broad.mit.edu	37	chr9	138557566	138557566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgaaaagtacggacttgGctcacaaaatatcatcgact	8	10	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138557566	T	T	138557566	3	4	60	1	0	0	0	0	1	0	0	0	8759	1203	42	3	461	3	LCN9	9	138557566	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	863742	138557566	2655865	764	67619											
KCNT1	57582	broad.mit.edu	37	chr9	138648795	138648795	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagtgagtgcctgcccggGatggcacctcacagggggtc	15	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138648795	T	T	138648795	1	4	60	0	1	0	0	0	0	0	0	0	8161	1189	41	3		3	KCNT1	9	138648795	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	91229	138648795	2564636	765	67620											
COBRA1	25920	broad.mit.edu	37	chr9	140166547	140166547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcagtggagacctttggcGacttggcctttggcgacatc	13	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140166547	T	T	140166547	3	4	60	1	0	0	0	0	1	0	0	0	3687	1058	37	3	1402	3	COBRA1	9	140166547	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1517752	140166547	1046884	766	67621											
CACNA1B	774	broad.mit.edu	37	chr9	140954102	140954102	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaactgctcttctttttctCtagaactatttcagagatgc	5	10	4	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140954102	A	A	140954102	1	1	60	0	1	0	0	0	0	0	0	0	2565	928	32	3		3	CACNA1B	9	140954102	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	787555	140954102	259329	767	67622											
DIP2C	22982	broad.mit.edu	37	chr10	375378	375378	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggagctgcttaccttgaGggactctgtttgcgagccca	13	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	375378	A	A	375378	3	1	60	1	0	0	0	0	1	0	0	0	4569	1000	35	4	954	4	DIP2C	10	375378	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08		375378	135159369	768	67623											
DIP2C	22982	broad.mit.edu	37	chr10	468637	468637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaatccagccaaagcaccCcaggggccagaggagctctg	11	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	468637	A	A	468637	1	1	60	0	1	0	0	0	0	0	0	0	4569	638	22	2		2	DIP2C	10	468637	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	93259	468637	135066110	769	67624											
ADARB2	105	broad.mit.edu	37	chr10	1569229	1569229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctttttggaagcttccGcatttggggatgatattaac	10	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1569229	T	T	1569229	1	4	60	0	1	0	0	0	0	0	0	0	283	1102	38	3		3	ADARB2	10	1569229	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1100592	1569229	133965518	770	67625											
RBM17	84991	broad.mit.edu	37	chr10	6154179	6154179	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctcctgccaggggcacGgtggcgcacaagatcatgca	12	13	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6154179	T	T	6154179	2	4	60	1	0	0	0	0	0	0	0	1	13227	1103	39	1		1	RBM17	10	6154179	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4584950	6154179	129380568	771	67626											
FRMD4A	55691	broad.mit.edu	37	chr10	13838333	13838333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccctgcaccctcgcacCccgcctttccatctatgagg	6	20	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13838333	A	A	13838333	1	1	60	0	1	0	0	0	0	0	0	0	6111	638	22	2		2	FRMD4A	10	13838333	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7684154	13838333	121696414	772	67627											
PTER	9317	broad.mit.edu	37	chr10	16553328	16553328	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcgatttccagtccactgtGagatattaatcagttaccta	7	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16553328	T	T	16553328	1	4	60	0	1	0	0	0	0	0	0	0	12845	1305	45	3		3	PTER	10	16553328	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2714995	16553328	118981419	773	67628											
SLC39A12	221074	broad.mit.edu	37	chr10	18266707	18266707	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgtccattctgtcatcTctagggcttaaaaaatgata	7	7	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18266707	C	C	18266707	1	2	60	0	1	0	0	0	0	0	0	0	14729	1566	54	5		5	SLC39A12	10	18266707	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1713379	18266707	117268040	774	67629											
SLC39A12	221074	broad.mit.edu	37	chr10	18266752	18266752	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttgtaagggaatatctAtgctgtagctatgtgaaatt	9	4	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18266752	G	G	18266752	1	3	60	0	1	0	0	0	0	0	0	0	14729	464	16	5		5	SLC39A12	10	18266752	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	45	18266752	117267995	775	67630											
MLLT10	8028	broad.mit.edu	37	chr10	21977377	21977377	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcatggtggtttttaggaaGtggtgattaaaaatctgaaa	12	2	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21977377	C	C	21977377	1	2	60	0	1	0	0	0	0	0	0	0	9719	1044	36	4		4	MLLT10	10	21977377	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3710625	21977377	113557370	776	67631											
ARMC3	219681	broad.mit.edu	37	chr10	23292132	23292132	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggagactcagtattggaTggcttgtataaagcaaataa	11	4	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23292132	C	C	23292132	1	2	60	0	1	0	0	0	0	0	0	0	956	1479	51	5		5	ARMC3	10	23292132	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1314755	23292132	112242615	777	67632											
ARMC3	219681	broad.mit.edu	37	chr10	23297703	23297703	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaatgtattgttgttttccAtatgattgaaattggttgtg	10	2	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23297703	C	C	23297703	1	2	60	0	1	0	0	0	0	0	0	0	956	232	8	5		5	ARMC3	10	23297703	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	5571	23297703	112237044	778	67633											
KIAA1217	56243	broad.mit.edu	37	chr10	24398110	24398110	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtcactcctttcactaatGatcagagagatggatcaaca	7	9	4	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24398110	T	T	24398110	1	4	60	0	1	0	0	0	0	0	0	0	8286	1305	45	3		3	KIAA1217	10	24398110	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1100407	24398110	111136637	779	67634											
GPR158	57512	broad.mit.edu	37	chr10	25886599	25886599	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgtagagcagttgccccAaattagagcccaagtttact	9	10	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25886599	C	C	25886599	1	2	60	0	1	0	0	0	0	0	0	0	6728	145	5	5		5	GPR158	10	25886599	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1488489	25886599	109648148	780	67635											
GAD2	2572	broad.mit.edu	37	chr10	26589618	26589618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaataaggttctgactGttgagctaaaaactaaagac	7	6	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26589618	T	T	26589618	1	4	60	0	1	0	0	0	0	0	0	0	6240	1392	48	3		3	GAD2	10	26589618	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	703019	26589618	108945129	781	67636											
APBB1IP	54518	broad.mit.edu	37	chr10	26785302	26785302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatttaactacagtgtgGggtttaaagatttaaatggt	10	3	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26785302	T	T	26785302	3	4	60	1	0	0	0	0	1	0	0	0	762	1232	43	2	148	2	APBB1IP	10	26785302	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	195684	26785302	108749445	782	67637											
APBB1IP	54518	broad.mit.edu	37	chr10	26800880	26800880	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtactccaaaaaccttgtGggtttgctgtataatgggct	10	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26800880	A	A	26800880	1	1	60	0	1	0	0	0	0	0	0	0	762	1363	47	4		4	APBB1IP	10	26800880	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	15578	26800880	108733867	783	67638											
RAB18	22931	broad.mit.edu	37	chr10	27815930	27815930	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaatttgtattaaataActtttgggagatttgatact	7	3	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27815930	T	T	27815930	1	4	60	0	1	0	0	0	0	0	0	0	13011	58	2	5		5	RAB18	10	27815930	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1015050	27815930	107718817	784	67639											
ARMC4	55130	broad.mit.edu	37	chr10	28284140	28284140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaagagaaagagacaaCagcgtccaccttttccttgg	10	10	0	3	rs111675655	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28284140	A	A	28284140	1	1	60	0	1	0	0	0	0	0	0	0	957	493	17	3		3	ARMC4	10	28284140	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	468210	28284140	107250607	785	67640											
ZEB1	6935	broad.mit.edu	37	chr10	31813004	31813004	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgacaagatattccaaaaGagtagttcattattgagaca	8	5	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31813004	A	A	31813004	2	1	60	1	0	0	0	0	0	0	0	1	17749	933	33	4		4	ZEB1	10	31813004	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3528864	31813004	103721743	786	67641											
BMS1	9790	broad.mit.edu	37	chr10	43297682	43297682	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatggtaagtaaagagctgGgttcttcaggaagactggct	14	5	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43297682	C	C	43297682	1	2	60	0	1	0	0	0	0	0	0	0	1478	1247	43	4		4	BMS1	10	43297682	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	11484678	43297682	92237065	787	67642											
BMS1	9790	broad.mit.edu	37	chr10	43319113	43319113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagcgttctataacccaGtaacatctttgttgaaacca	5	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43319113	T	T	43319113	3	4	60	1	0	0	0	0	1	0	0	0	1478	1029	36	3	3415	3	BMS1	10	43319113	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	21431	43319113	92215634	788	67643											
OR13A1	79290	broad.mit.edu	37	chr10	45798994	45798994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacagtgtacagcaggcCagccaacttgctcttccctg	9	15	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45798994	A	A	45798994	3	1	60	1	0	0	0	0	1	0	0	0	11027	594	21	2	113	2	OR13A1	10	45798994	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2479881	45798994	89735753	789	67644											
PCDH15	65217	broad.mit.edu	37	chr10	55600137	55600137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtcaattgcatagacaGtcaagtcacatttggtgtaa	12	6	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55600137	T	T	55600137	3	4	60	1	0	0	0	0	1	0	0	0	11605	1029	36	3	3580	3	PCDH15	10	55600137	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	9801143	55600137	79934610	790	67645											
PCDH15	65217	broad.mit.edu	37	chr10	55664982	55664982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacgtcatctgctcccctGtcgtgtctttctaatgtgtc	7	12	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55664982	T	T	55664982	1	4	60	0	1	0	0	0	0	0	0	0	11605	1392	48	3		3	PCDH15	10	55664982	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	64845	55664982	79869765	791	67646											
IPMK	253430	broad.mit.edu	37	chr10	59955883	59955884	+	Missense_Mutation	DNP	CC	AA	AA													cagaaattaaatgctttagcCcataaacatatccctcatct							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	59955884	AA	AA	59955883	3	1	60	1	0	0	0	0	1	0	0	0	7862	623	22	2	49	2	IPMK	10	59955883	Missense_Mutation	DNP	CC	TCGA-17-Z030-01A-01W-0746-08	4290901	59955883	75578864	792	67647											
ANK3	288	broad.mit.edu	37	chr10	61833198	61833198	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggtctgtaaccgattcctCagtatcagaatgagacacat	8	9	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61833198	T	T	61833198	3	4	60	1	0	0	0	0	1	0	0	0	622	835	29	4	6033	4	ANK3	10	61833198	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1877315	61833198	73701549	793	67648											
ARID5B	84159	broad.mit.edu	37	chr10	63661442	63661442	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaagtttggagagaatgtTgagttcaatcaattcagaac	9	5	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63661442	G	G	63661442	1	3	60	0	1	0	0	0	0	0	0	0	924	1827	63	5		5	ARID5B	10	63661442	5'Flank	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1828244	63661442	71873305	794	67649											
ZNF365	22891	broad.mit.edu	37	chr10	64382827	64382827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatatttgtggttgtattaCctagttatttttgctattta	7	3	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64382827	A	A	64382827	1	1	60	0	1	0	0	0	0	0	0	0	17995	522	18	3		3	ZNF365	10	64382827	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	721385	64382827	71151920	795	67650											
MYPN	84665	broad.mit.edu	37	chr10	69955312	69955312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacagtaagaattccccCtctctaggcccttcccaagc	6	15	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69955312	A	A	69955312	1	1	60	0	1	0	0	0	0	0	0	0	10192	696	24	2		2	MYPN	10	69955312	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5572485	69955312	65579435	796	67651											
TET1	80312	broad.mit.edu	37	chr10	70446363	70446363	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgacagaggttcttgcacAtaagataagggcagtggaaa	13	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70446363	G	G	70446363	3	3	60	1	0	0	0	0	1	0	0	0	15891	217	8	5	5341	5	TET1	10	70446363	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	491051	70446363	65088384	797	67652											
SAR1A	56681	broad.mit.edu	37	chr10	71923803	71923803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagttaacagatgaagaagTtgattaaatgatcagggaag	12	2	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71923803	A	A	71923803	1	1	60	0	1	0	0	0	0	0	0	0	13951	1740	60	5		5	SAR1A	10	71923803	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1477440	71923803	63610944	798	67653											
PRF1	5551	broad.mit.edu	37	chr10	72357934	72357934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcggaattttaggtggcCatgattcaggttgcatctca	11	7	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72357934	A	A	72357934	3	1	60	1	0	0	0	0	1	0	0	0	12584	594	21	2	128	2	PRF1	10	72357934	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	434131	72357934	63176813	799	67654											
ADAMTS14	140766	broad.mit.edu	37	chr10	72520525	72520525	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggactcagacacctacGccagtccctgaggacaaagg	12	13	1	2	rs61736608	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72520525	T	T	72520525	2	4	60	1	0	0	0	0	0	0	0	1	259	1074	38	3		3	ADAMTS14	10	72520525	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	162591	72520525	63014222	800	67655											
KCNMA1	3778	broad.mit.edu	37	chr10	78918563	78918563	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaggagttcaaggtgaTagctctctttgagggaggga	16	4	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78918563	C	C	78918563	1	2	60	0	1	0	0	0	0	0	0	0	8143	1421	49	5		5	KCNMA1	10	78918563	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	6398038	78918563	56616184	801	67656											
KCNMA1	3778	broad.mit.edu	37	chr10	79154575	79154575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatattgacaggcatacagGgagtggcaattgtttcttta	11	5	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79154575	T	T	79154575	1	4	60	0	1	0	0	0	0	0	0	0	8143	1247	43	2		2	KCNMA1	10	79154575	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	236012	79154575	56380172	802	67657											
C10orf99	387695	broad.mit.edu	37	chr10	85933700	85933700	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggcagcccccagggtgcaGatccctgagcaggatttcag	14	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85933700	C	C	85933700	1	2	60	0	1	0	0	0	0	0	0	0	1639	957	33	4		4	C10orf99	10	85933700	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6779125	85933700	49601047	803	67658											
ANKRD22	118932	broad.mit.edu	37	chr10	90582699	90582699	+	Nonstop_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcggtgtggtcacaaggatTacaatgctttccttagcatt	9	8	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90582699	G	G	90582699	4	3	60	1	0	0	0	0	0	0	0	0	651	1761	61	5	4	5	ANKRD22	10	90582699	Nonstop_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4648999	90582699	44952048	804	67659											
STAMBPL1	57559	broad.mit.edu	37	chr10	90672782	90672782	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttctctgtctgcttgaaGactgaaaatgtctaattcca	6	8	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90672782	A	A	90672782	1	1	60	0	1	0	0	0	0	0	0	0	15369	957	33	4		4	STAMBPL1	10	90672782	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	90083	90672782	44861965	805	67660											
LIPA	3988	broad.mit.edu	37	chr10	90974763	90974763	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagccagtcgtgacccccgCtccagactgcagtcggcaca	10	17	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90974763	G	G	90974763	3	3	60	1	0	0	0	0	1	0	0	0	8892	797	28	4	181	4	LIPA	10	90974763	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	301981	90974763	44559984	806	67661											
NOC3L	64318	broad.mit.edu	37	chr10	96122587	96122587	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttttgaggacacttacCgccttcatccttaggcctta	9	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96122587	A	A	96122587	2	1	60	1	0	0	0	0	0	0	0	1	10609	666	23	1		1	NOC3L	10	96122587	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5147824	96122587	39412160	807	67662											
TCTN3	26123	broad.mit.edu	37	chr10	97447340	97447340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaatcccatccccttcccCaggctcaccctgtaaaaaga	4	17	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97447340	A	A	97447340	1	1	60	0	1	0	0	0	0	0	0	0	15846	609	21	2		2	TCTN3	10	97447340	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1324753	97447340	38087407	808	67663											
ABCC2	1244	broad.mit.edu	37	chr10	101572668	101572669	+	Intron	DNP	GG	TC	TC													gcaaattttccaatcttgagGggaaatctcctgataccaga							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	101572669	TC	TC	101572668	1	4	60	0	1	0	0	0	0	0	0	0	53	1247	43	2		2	ABCC2	10	101572668	Intron	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	4125328	101572668	33962079	809	67664											
CPN1	1369	broad.mit.edu	37	chr10	101808538	101808538	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttggttccgcaggacccaCggtcacagttactgtctctg	11	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101808538	T	T	101808538	3	4	60	1	0	0	0	0	1	0	0	0	3841	536	19	4	177	4	CPN1	10	101808538	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	235870	101808538	33726209	810	67665											
PAX2	5076	broad.mit.edu	37	chr10	102584616	102584616	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggggagacacaacgtccCctccctgcaaaccactgcta	10	15	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102584616	G	G	102584616	1	3	60	0	1	0	0	0	0	0	0	0	11573	638	22	4		4	PAX2	10	102584616	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	776078	102584616	32950131	811	67666											
C10orf26	54838	broad.mit.edu	37	chr10	104557800	104557800	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagctacatctgtgacacAggacactgctgtggacagtc	10	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104557800	T	T	104557800	2	4	60	1	0	0	0	0	0	0	0	1	1610	175	7	5		5	C10orf26	10	104557800	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1973184	104557800	30976947	812	67667											
SORCS3	22986	broad.mit.edu	37	chr10	106563415	106563415	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccttattgccactctccctTtctggctatctctgggttgc	7	15	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106563415	A	A	106563415	1	1	60	0	1	0	0	0	0	0	0	0	15046	1856	64	5		5	SORCS3	10	106563415	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2005615	106563415	28971332	813	67668											
SORCS3	22986	broad.mit.edu	37	chr10	106602542	106602542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgcccttatccccaaccCcttgcaggtcatacttatcc	4	17	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106602542	T	T	106602542	1	4	60	0	1	0	0	0	0	0	0	0	15046	638	22	4		4	SORCS3	10	106602542	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	39127	106602542	28932205	814	67669											
NHLRC2	374354	broad.mit.edu	37	chr10	115668188	115668188	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctttattactgtagtgcaGacagcagtgcttgtatgatg	10	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115668188	C	C	115668188	3	2	60	1	0	0	0	0	1	0	0	0	10501	942	33	4	2116	4	NHLRC2	10	115668188	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	9065646	115668188	19866559	815	67670											
ATRNL1	26033	broad.mit.edu	37	chr10	117061587	117061587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagtgacttttcacttgaCagcaacgtaaatttactttt	6	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117061587	T	T	117061587	1	4	60	0	1	0	0	0	0	0	0	0	1211	493	17	4		4	ATRNL1	10	117061587	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1393399	117061587	18473160	816	67671											
SLC18A2	6571	broad.mit.edu	37	chr10	119026324	119026324	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacacaaaatggggaggTaagatgatatgaaaacaaca	10	5	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119026324	A	A	119026324	5	1	60	1	0	0	0	0	0	0	1	0	14539	1652	57	5	1110	5	SLC18A2	10	119026324	Splice_Site	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1964737	119026324	16508423	817	67672											
EIF3A	8661	broad.mit.edu	37	chr10	120819115	120819115	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttacagcacatacctaccTgcaagtcgcaatgcctggct	7	15	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120819115	A	A	120819115	3	1	60	1	0	0	0	0	1	0	0	0	5052	1594	55	5	2758	5	EIF3A	10	120819115	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1792791	120819115	14715632	818	67673											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122280406	122280406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagctgggggcagtggGgagttgggggggtcagcttg	23	4	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122280406	T	T	122280406	1	4	60	0	1	0	0	0	0	0	0	0	12389	1247	43	2		2	PPAPDC1A	10	122280406	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1461291	122280406	13254341	819	67674											
TACC2	10579	broad.mit.edu	37	chr10	123970023	123970023	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccgtcttcgatgaagacaAgccgatagccagcagtggga	13	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123970023	G	G	123970023	3	3	60	1	0	0	0	0	1	0	0	0	15621	72	3	5	6185	5	TACC2	10	123970023	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1689617	123970023	11564724	820	67675											
DMBT1	1755	broad.mit.edu	37	chr10	124376666	124376666	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgttgccaggttgattccCcctcccagagaaccttttgt	8	12	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124376666	T	T	124376666	1	4	60	0	1	0	0	0	0	0	0	0	4617	638	22	4		4	DMBT1	10	124376666	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	406643	124376666	11158081	821	67676											
C10orf120	399814	broad.mit.edu	37	chr10	124457686	124457686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagacagaaatgaggagcGtgtaaacctttcaatgtagg	11	8	1	3	rs144052210	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124457686	T	T	124457686	3	4	60	1	0	0	0	0	1	0	0	0	1601	1145	40	3	440	3	C10orf120	10	124457686	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	81020	124457686	11077061	822	67677											
C10orf90	118611	broad.mit.edu	37	chr10	128148134	128148134	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacgatccaaaagccctacAttctgtattccaaagagaca	6	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128148134	G	G	128148134	1	3	60	0	1	0	0	0	0	0	0	0	1634	232	8	5		5	C10orf90	10	128148134	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3690448	128148134	7386613	823	67678											
LSP1	4046	broad.mit.edu	37	chr11	1904651	1904651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccctttccacccacaggcCcggcctgcatgcctacgaaa	7	19	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1904651	A	A	1904651	3	1	60	1	0	0	0	0	1	0	0	0	9150	623	22	2	373	2	LSP1	11	1904651	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08		1904651	133101865	824	67679											
NUP98	4928	broad.mit.edu	37	chr11	3800112	3800112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccacttactgccaaagcCagttggtttattttgtgcaa	8	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3800112	A	A	3800112	3	1	60	1	0	0	0	0	1	0	0	0	10868	594	21	2	5248	2	NUP98	11	3800112	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1895461	3800112	131206404	825	67680											
OR52E6	390078	broad.mit.edu	37	chr11	5862832	5862832	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaacatctgagaaaggTagcctccaaaagatatttcc	8	8	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5862832	A	A	5862832	3	1	60	1	0	0	0	0	1	0	0	0	11211	1638	57	5	647	5	OR52E6	11	5862832	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2062720	5862832	129143684	826	67681											
HPX	3263	broad.mit.edu	37	chr11	6458672	6458672	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgctagggctttctcacctCtgccagggcagggcatgaag	14	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6458672	A	A	6458672	3	1	60	1	0	0	0	0	1	0	0	0	7413	913	32	3	707	3	HPX	11	6458672	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	595840	6458672	128547844	827	67682											
SYT9	143425	broad.mit.edu	37	chr11	7464823	7464823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaatcagcagctcatgtgCtccgttcttcaccttcagca	7	13	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7464823	A	A	7464823	1	1	60	0	1	0	0	0	0	0	0	0	15600	812	28	3		3	SYT9	11	7464823	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1006151	7464823	127541693	828	67683											
MYOD1	4654	broad.mit.edu	37	chr11	17742352	17742352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgggcccggaactagagCcttaggctagagttagggag	16	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17742352	A	A	17742352	1	1	60	0	1	0	0	0	0	0	0	0	10182	754	26	3		3	MYOD1	11	17742352	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	10277529	17742352	117264164	829	67684											
SAA1	6288	broad.mit.edu	37	chr11	18291032	18291032	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgctcagtgtgaggtcTgagtggatggtaggagtgag	18	4	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18291032	A	A	18291032	1	1	60	0	1	0	0	0	0	0	0	0	13909	1595	55	5		5	SAA1	11	18291032	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	548680	18291032	116715484	830	67685											
NAV2	89797	broad.mit.edu	37	chr11	20066693	20066693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggttcaagaagcagagtGgttccgccgccggcctggcc	15	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20066693	T	T	20066693	3	4	60	1	0	0	0	0	1	0	0	0	10278	1348	47	2	3542	2	NAV2	11	20066693	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1775661	20066693	114939823	831	67686											
NELL1	4745	broad.mit.edu	37	chr11	20959283	20959283	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggtacctctgaggtcaTtttgtggcacagcaggactg	13	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20959283	G	G	20959283	1	3	60	0	1	0	0	0	0	0	0	0	10428	1508	52	5		5	NELL1	11	20959283	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	892590	20959283	114047233	832	67687											
NELL1	4745	broad.mit.edu	37	chr11	21125785	21125785	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggccaagactgaattgAtcacccttcactcaatgtgt	7	11	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21125785	G	G	21125785	1	3	60	0	1	0	0	0	0	0	0	0	10428	348	12	5		5	NELL1	11	21125785	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	166502	21125785	113880731	833	67688											
LUZP2	338645	broad.mit.edu	37	chr11	25004876	25004876	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctttgtaaagtaacagCaagtaatgtgttgtctttaa	9	5	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25004876	A	A	25004876	1	1	60	0	1	0	0	0	0	0	0	0	9174	725	25	3		3	LUZP2	11	25004876	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3879091	25004876	110001640	834	67689											
WT1	7490	broad.mit.edu	37	chr11	32413611	32413611	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactggaatggtttcacacCtaaatggacagagaaggtct	10	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32413611	A	A	32413611	5	1	60	1	0	0	0	0	0	0	1	0	17535	695	24	2	222	2	WT1	11	32413611	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7408735	32413611	102592905	835	67690											
EIF3M	10480	broad.mit.edu	37	chr11	32608338	32608338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattctgaaggtgatccatgGgggctgtagtgtgtctaagg	15	5	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32608338	T	T	32608338	1	4	60	0	1	0	0	0	0	0	0	0	5065	1247	43	2		2	EIF3M	11	32608338	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	194727	32608338	102398178	836	67691											
CD44	960	broad.mit.edu	37	chr11	35241796	35241796	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggggaagccttagctgtCatcaggcagcaagattcttc	11	10	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35241796	T	T	35241796	1	4	60	0	1	0	0	0	0	0	0	0	3047	841	29	4		4	CD44	11	35241796	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2633458	35241796	99764720	837	67692											
PRR5L	79899	broad.mit.edu	37	chr11	36422579	36422579	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtggttttaagaaagccTgagggcctgaaggcagcccc	13	9	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36422579	C	C	36422579	1	2	60	0	1	0	0	0	0	0	0	0	12708	1595	55	5		5	PRR5L	11	36422579	5'UTR	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1180783	36422579	98583937	838	67693											
RAG1	5896	broad.mit.edu	37	chr11	36594898	36594898	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggactcagttctgcccCagatgaaattcagcacccac	8	14	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36594898	T	T	36594898	3	4	60	1	0	0	0	0	1	0	0	0	13111	594	21	4	46	4	RAG1	11	36594898	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	172319	36594898	98411618	839	67694											
EXT2	2132	broad.mit.edu	37	chr11	44257898	44257898	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacagccatagatgggctttCactagaccaaacacacatgg	8	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44257898	T	T	44257898	3	4	60	1	0	0	0	0	1	0	0	0	5367	838	29	4	2237	4	EXT2	11	44257898	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7663000	44257898	90748618	840	67695											
OR4C46	119749	broad.mit.edu	37	chr11	51515308	51515308	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataggaataacatgacagaGtttgttttgctggggcttac	11	5	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515308	A	A	51515308	2	1	60	1	0	0	0	0	0	0	0	1	11145	1020	36	4		4	OR4C46	11	51515308	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7257410	51515308	83491208	841	67696											
OR4C15	81309	broad.mit.edu	37	chr11	55322796	55322796	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcccttgctcaatcctttGatttacactttcaggaataa	4	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55322796	T	T	55322796	3	4	60	1	0	0	0	0	1	0	0	0	11142	1281	45	3	1016	3	OR4C15	11	55322796	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3807488	55322796	79683720	842	67697											
OR8H2	390151	broad.mit.edu	37	chr11	55872681	55872681	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgataatccgcctggacctcCagcttcacactcccatgtat	6	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55872681	T	T	55872681	4	4	60	1	0	0	0	0	0	1	0	0	11332	595	21	4	165	4	OR8H2	11	55872681	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	549885	55872681	79133835	843	67698											
OR8H3	390152	broad.mit.edu	37	chr11	55889756	55889756	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccggctcccatgttcaagcGattctcctgcctcagcttct	7	16	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55889756	T	T	55889756	1	4	60	0	1	0	0	0	0	0	0	0	11333	1073	37	3		3	OR8H3	11	55889756	5'Flank	SNP	G	TCGA-17-Z030-01A-01W-0746-08	17075	55889756	79116760	844	67699											
OR8K3	219473	broad.mit.edu	37	chr11	56086563	56086563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttcatgtacgtgcagCccaagtccagtcattccttt	7	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56086563	A	A	56086563	3	1	60	1	0	0	0	0	1	0	0	0	11338	739	26	3	783	3	OR8K3	11	56086563	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	196807	56086563	78919953	845	67700											
OR8J1	219477	broad.mit.edu	37	chr11	56128382	56128382	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctagtatcttatttcaaTattgttttgtctattttaaa	4	4	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128382	A	A	56128382	3	1	60	1	0	0	0	0	1	0	0	0	11335	1403	49	5	662	5	OR8J1	11	56128382	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	41819	56128382	78878134	846	67701											
OR5R1	219479	broad.mit.edu	37	chr11	56185246	56185246	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacggtgtggaagagggcaaCcaggaagctgtatatatatg	14	5	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56185246	T	T	56185246	3	4	60	1	0	0	0	0	1	0	0	0	11274	507	18	4	513	4	OR5R1	11	56185246	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	56864	56185246	78821270	847	67702											
PRG2	5553	broad.mit.edu	37	chr11	57156661	57156661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttggaggcatcttcacttCcagagccccactcctcctct	6	17	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57156661	A	A	57156661	3	1	60	1	0	0	0	0	1	0	0	0	12585	855	30	3	496	3	PRG2	11	57156661	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	971415	57156661	77849855	848	67703											
OR9Q1	219956	broad.mit.edu	37	chr11	57877014	57877014	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatcatccccccattcccCagaaaagtgacaagatagaa	6	12	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57877014	T	T	57877014	1	4	60	0	1	0	0	0	0	0	0	0	11349	609	21	4		4	OR9Q1	11	57877014	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	720353	57877014	77129502	849	67704											
OR10Q1	219960	broad.mit.edu	37	chr11	57995949	57995949	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgagggtgtagtgcagCgggtggcagatagccacata	16	6	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57995949	A	A	57995949	2	1	60	1	0	0	0	0	0	0	0	1	11010	755	27	3		3	OR10Q1	11	57995949	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	118935	57995949	77010567	850	67705											
OR5B3	441608	broad.mit.edu	37	chr11	58170551	58170551	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggccattgaggccaagaggTaattttccacagtggcaaaa	11	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58170551	A	A	58170551	3	1	60	1	0	0	0	0	1	0	0	0	11246	1638	57	5	614	5	OR5B3	11	58170551	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	174602	58170551	76835965	851	67706											
GLYATL2	219970	broad.mit.edu	37	chr11	58601812	58601812	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatcctagataatcagttGcattttgtgctaatgtagat	8	6	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58601812	C	C	58601812	1	2	60	0	1	0	0	0	0	0	0	0	6545	1334	46	4		4	GLYATL2	11	58601812	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	431261	58601812	76404704	852	67707											
OR4D11	219986	broad.mit.edu	37	chr11	59271537	59271537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgtgcagatctccctgttGctgcctctccctttctgtgg	9	14	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59271537	T	T	59271537	3	4	60	1	0	0	0	0	1	0	0	0	11149	1310	46	3	491	3	OR4D11	11	59271537	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	669725	59271537	75734979	853	67708											
MS4A6E	245802	broad.mit.edu	37	chr11	60107400	60107400	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctagctgtgctcactgCtgtgctgcagtggaaacaga	12	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60107400	G	G	60107400	3	3	60	1	0	0	0	0	1	0	0	0	9959	797	28	4	426	4	MS4A6E	11	60107400	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	835863	60107400	74899116	854	67709											
CD5	921	broad.mit.edu	37	chr11	60889387	60889387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcacatgtgagttggcCacagcccacagtgggtggaa	13	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60889387	A	A	60889387	1	1	60	0	1	0	0	0	0	0	0	0	3051	609	21	2		2	CD5	11	60889387	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	781987	60889387	74117129	855	67710											
ASRGL1	80150	broad.mit.edu	37	chr11	62123879	62123879	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagacctgtctgcaggagcAgtgtccgcagtccagtgtat	12	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62123879	G	G	62123879	2	3	60	1	0	0	0	0	0	0	0	1	1064	175	7	5		5	ASRGL1	11	62123879	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1234492	62123879	72882637	856	67711											
AHNAK	79026	broad.mit.edu	37	chr11	62295107	62295107	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaagttcacatccacttctGggccctctcctttgaagcca	7	15	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62295107	C	C	62295107	3	2	60	1	0	0	0	0	1	0	0	0	414	1348	47	4	11010	4	AHNAK	11	62295107	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	171228	62295107	72711409	857	67712											
SLC22A10	387775	broad.mit.edu	37	chr11	63129963	63129963	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaatgctggagacacCctaaccatggaggtgagcag	13	8	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63129963	A	A	63129963	1	1	60	0	1	0	0	0	0	0	0	0	14554	638	22	2		2	SLC22A10	11	63129963	RNA	SNP	C	TCGA-17-Z030-01A-01W-0746-08	834856	63129963	71876553	858	67713											
FERMT3	83706	broad.mit.edu	37	chr11	63987463	63987463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacgaggcccctggggacCccattcagcagctcaacctc	11	16	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63987463	A	A	63987463	3	1	60	1	0	0	0	0	1	0	0	0	5876	623	22	2	1226	2	FERMT3	11	63987463	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	857500	63987463	71019053	859	67714											
SLC22A11	55867	broad.mit.edu	37	chr11	64335165	64335165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggccctcttcggggccgtgGacttcctgggccgggccacc	15	16	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64335165	T	T	64335165	3	4	60	1	0	0	0	0	1	0	0	0	14555	1174	41	3	1179	3	SLC22A11	11	64335165	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	347702	64335165	70671351	860	67715											
NRXN2	9379	broad.mit.edu	37	chr11	64453143	64453143	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtttcgggtgacccggAcgtcgtgccaggcgttgtcg	17	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64453143	G	G	64453143	3	3	60	1	0	0	0	0	1	0	0	0	10761	275	10	5	4352	5	NRXN2	11	64453143	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	117978	64453143	70553373	861	67716											
EHD1	10938	broad.mit.edu	37	chr11	64622371	64622371	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagggctgggaagggaggcCcctcccagactccaggccaa	14	14	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64622371	A	A	64622371	1	1	60	0	1	0	0	0	0	0	0	0	5017	638	22	2		2	EHD1	11	64622371	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	169228	64622371	70384145	862	67717											
CATSPER1	117144	broad.mit.edu	37	chr11	65789107	65789107	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcacggccatggccataatGaagaagtctgagggcacggg	15	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65789107	T	T	65789107	3	4	60	1	0	0	0	0	1	0	0	0	2713	1281	45	3	827	3	CATSPER1	11	65789107	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1166736	65789107	69217409	863	67718											
SF3B2	10992	broad.mit.edu	37	chr11	65830907	65830908	+	Frame_Shift_Ins	INS	-	G	G													agagattgatcggaccccttINSggggggaactggaaccatct							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65830908	G	G	65830907	7	5	60	1	0	1	1	0	0	0	0	0	14264	1812	63	0	2192	0	SF3B2	11	65830907	Frame_Shift_Ins	INS	-	TCGA-17-Z030-01A-01W-0746-08	41800	65830907	69175609	864	67719											
NDUFV1	4723	broad.mit.edu	37	chr11	67376993	67376993	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaccgggagatcttacgcCatgatcctcacaagctgctg	11	12	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67376993	T	T	67376993	3	4	60	1	0	0	0	0	1	0	0	0	10394	594	21	4	411	4	NDUFV1	11	67376993	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1546086	67376993	67629523	865	67720											
ALDH3B2	222	broad.mit.edu	37	chr11	67433923	67433923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccagggtccccatgccCaaccaggggctgggctcaga	14	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67433923	A	A	67433923	1	1	60	0	1	0	0	0	0	0	0	0	500	609	21	2		2	ALDH3B2	11	67433923	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	56930	67433923	67572593	866	67721											
INPPL1	3636	broad.mit.edu	37	chr11	71940606	71940606	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccttttgcagcagcaggtaGattgtagggagacctctggg	15	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71940606	T	T	71940606	1	4	60	0	1	0	0	0	0	0	0	0	7831	957	33	3		3	INPPL1	11	71940606	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4506683	71940606	63065910	867	67722											
FCHSD2	9873	broad.mit.edu	37	chr11	72710912	72710921	+	Intron	DEL	ACACACACAC	-	-													ccctctttctgcacaatcagAcacacacacacacacacaca					rs138484535		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72710921	-	-	72710912	6	5	60	0	1	1	0	1	0	0	0	0	5847	290	10	0		0	FCHSD2	11	72710912	Intron	DEL	ACACACACAC	TCGA-17-Z030-01A-01W-0746-08	770306	72710912	62295604	868	67723											
POLD3	10714	broad.mit.edu	37	chr11	74340460	74340460	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggattaaggatcacaatgAgagtagtaattctagcatta	9	4	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74340460	G	G	74340460	1	3	60	0	1	0	0	0	0	0	0	0	12287	319	11	5		5	POLD3	11	74340460	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1629548	74340460	60666056	869	67724											
NEU3	10825	broad.mit.edu	37	chr11	74705506	74705506	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcagaatttatatgcaggCcagcatctgggtatggacac	11	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74705506	T	T	74705506	1	4	60	0	1	0	0	0	0	0	0	0	10438	754	26	4		4	NEU3	11	74705506	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	365046	74705506	60301010	870	67725											
DLG2	1740	broad.mit.edu	37	chr11	83272048	83272049	+	Intron	INS	-	A	A													agggaaacctcaggaaacttINSacaaccatggcagaaggaga					rs139135815	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83272049	A	A	83272048	6	5	60	0	1	1	1	0	0	0	0	0	4595	1769	61	0		0	DLG2	11	83272048	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	8566542	83272048	51734468	871	67726											
PICALM	8301	broad.mit.edu	37	chr11	85742606	85742606	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttcaaataaactgtctgCcaactgtgggatgttcacat	7	9	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85742606	G	G	85742606	3	3	60	1	0	0	0	0	1	0	0	0	11975	739	26	4	1884	4	PICALM	11	85742606	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2470558	85742606	49263910	872	67727											
CCDC81	60494	broad.mit.edu	37	chr11	86111671	86111671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaactacacagttagtgGtttgagagttgaaaggagac	11	4	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86111671	T	T	86111671	1	4	60	0	1	0	0	0	0	0	0	0	2883	1276	44	3		3	CCDC81	11	86111671	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	369065	86111671	48894845	873	67728											
FZD4	8322	broad.mit.edu	37	chr11	86663040	86663040	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactgagaaatatgatggggCgctcagggtaggaaaaccta	13	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86663040	T	T	86663040	3	4	60	1	0	0	0	0	1	0	0	0	6192	768	27	4	859	4	FZD4	11	86663040	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	551369	86663040	48343476	874	67729											
FOLH1B	219595	broad.mit.edu	37	chr11	89420596	89420597	+	Missense_Mutation	DNP	GG	TT	TT													gtccttccccagagttcagtGgcatgcccaggtaaataaat							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	89420597	TT	TT	89420596	3	4	60	1	0	0	0	0	1	0	0	0	6038	1348	47	2	624	2	FOLH1B	11	89420596	Missense_Mutation	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	2757556	89420596	45585920	875	67730											
NAALAD2	10003	broad.mit.edu	37	chr11	89903213	89903213	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttagaagtatgaaataataCtctgtgtcttatttattttt	5	3	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89903213	G	G	89903213	1	3	60	0	1	0	0	0	0	0	0	0	10222	580	20	4		4	NAALAD2	11	89903213	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	482617	89903213	45103303	876	67731											
FAT3	120114	broad.mit.edu	37	chr11	92531048	92531048	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaccggtcctaggcatcatCaccatttgcaaagaaccaga	8	12	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531048	A	A	92531048	2	1	60	1	0	0	0	0	0	0	0	1	5748	816	29	3		3	FAT3	11	92531048	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2627835	92531048	42475468	877	67732											
CCDC67	159989	broad.mit.edu	37	chr11	93127784	93127784	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggaaaaacagttaaaaatgGaattagaaataaaagaaaaa	7	1	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93127784	C	C	93127784	3	2	60	1	0	0	0	0	1	0	0	0	2867	1175	41	4	1235	4	CCDC67	11	93127784	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	596736	93127784	41878732	878	67733											
AMOTL1	154810	broad.mit.edu	37	chr11	94597859	94597859	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgcattgagacaaagcaaGaaggtttcctatgatcaaac	8	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94597859	T	T	94597859	1	4	60	0	1	0	0	0	0	0	0	0	583	957	33	3		3	AMOTL1	11	94597859	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1470075	94597859	40408657	879	67734											
DYNC2H1	79659	broad.mit.edu	37	chr11	103027575	103027575	+	Intron	SNP	C	T	T													atattgtgaagtgcttaataCaggcaaattacttttacatg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103027575	T	T	103027575	1	4	60	0	1	0	0	0	0	0	0	0	4886	493	17	4		4	DYNC2H1	11	103027575	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	8429716	103027575	31978941	880	67735	312	2									
DYNC2H1	79659	broad.mit.edu	37	chr11	103027577	103027577	+	Intron	SNP	G	T	T													attgtgaagtgcttaatacaGgcaaattacttttacatgat							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103027577	T	T	103027577	1	4	60	0	1	0	0	0	0	0	0	0	4886	1015	35	2		2	DYNC2H1	11	103027577	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2	103027577	31978939	881	67736	312	2									
PDGFD	80310	broad.mit.edu	37	chr11	103797617	103797617	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatagattaagcattgcaaCaagaaatctaagaatgacat	6	6	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103797617	A	A	103797617	1	1	60	0	1	0	0	0	0	0	0	0	11754	493	17	3		3	PDGFD	11	103797617	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	770040	103797617	31208899	882	67737											
CASP5	838	broad.mit.edu	37	chr11	104869611	104869611	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttactaaaagacacataCgtggtgttgaagaacagaaa	9	6	0	4	rs141481245	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104869611	T	T	104869611	5	4	60	1	0	0	0	0	0	0	1	0	2700	550	19	4	219	4	CASP5	11	104869611	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1071994	104869611	30136905	883	67738											
GUCY1A2	2977	broad.mit.edu	37	chr11	106579321	106579321	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgacattatttccaaaCaggcaataacgtggcattcg	9	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106579321	A	A	106579321	2	1	60	1	0	0	0	0	0	0	0	1	6958	465	17	3		3	GUCY1A2	11	106579321	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1709710	106579321	28427195	884	67739											
ARHGAP20	57569	broad.mit.edu	37	chr11	110451559	110451559	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatagtcgatgctgggctctGagcaacgccggtgtcgcctc	14	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110451559	T	T	110451559	4	4	60	1	0	0	0	0	0	1	0	0	872	1294	45	3	1468	3	ARHGAP20	11	110451559	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3872238	110451559	24554957	885	67740											
TTC12	54970	broad.mit.edu	37	chr11	113211455	113211455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaacgaggtcataagaaGgtagggatgttcatagagac	13	5	2	3	rs142932707		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113211455	T	T	113211455	3	4	60	1	0	0	0	0	1	0	0	0	16805	1014	35	2	934	2	TTC12	11	113211455	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2759896	113211455	21795061	886	67741											
CLDN25	644672	broad.mit.edu	37	chr11	113651172	113651172	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagtcagatggctccttcCacctcatgctaagacctagg	10	12	2	2	rs35111413		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113651172	T	T	113651172	3	4	60	1	0	0	0	0	1	0	0	0	3517	594	21	4	657	4	CLDN25	11	113651172	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	439717	113651172	21355344	887	67742											
DSCAML1	57453	broad.mit.edu	37	chr11	117647491	117647491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctgtctgccgcagcccCgggacgcttcttacctggga	11	16	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117647491	A	A	117647491	1	1	60	0	1	0	0	0	0	0	0	0	4809	667	23	1		1	DSCAML1	11	117647491	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3996319	117647491	17359025	888	67743											
TMPRSS4	56649	broad.mit.edu	37	chr11	117945613	117945613	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacagccaccctgcccagtCctgcttatgtgccttcttcc	6	18	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117945613	A	A	117945613	1	1	60	0	1	0	0	0	0	0	0	0	16372	870	30	3		3	TMPRSS4	11	117945613	5'Flank	SNP	C	TCGA-17-Z030-01A-01W-0746-08	298122	117945613	17060903	889	67744											
ARCN1	372	broad.mit.edu	37	chr11	118454055	118454055	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctcatgaggagaaggtGttcagagccgtcagagaggt	15	6	3	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118454055	T	T	118454055	2	4	60	1	0	0	0	0	0	0	0	1	844	1364	48	3		3	ARCN1	11	118454055	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	508442	118454055	16552461	890	67745											
GRIK4	2900	broad.mit.edu	37	chr11	120687901	120687901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcatcacatcctccccCaagccccactccaatatggc	5	19	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120687901	A	A	120687901	1	1	60	0	1	0	0	0	0	0	0	0	6842	609	21	2		2	GRIK4	11	120687901	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2233846	120687901	14318615	891	67746											
C11orf63	79864	broad.mit.edu	37	chr11	122805773	122805773	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agacaaaatacaggaacttaGaaatgttatggtaagaattc	8	4	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122805773	C	C	122805773	3	2	60	1	0	0	0	0	1	0	0	0	1666	943	33	4	1702	4	C11orf63	11	122805773	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2117872	122805773	12200743	892	67747											
PANX3	116337	broad.mit.edu	37	chr11	124483029	124483029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccacaaggtaaagcaaaCtctctgtaaggccagcttca	8	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124483029	A	A	124483029	1	1	60	0	1	0	0	0	0	0	0	0	11516	580	20	3		3	PANX3	11	124483029	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1677256	124483029	10523487	893	67748											
HEPACAM	220296	broad.mit.edu	37	chr11	124792502	124792502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccttggccaaacctttccCtcctctgcagtcttcgtgca	6	16	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792502	T	T	124792502	1	4	60	0	1	0	0	0	0	0	0	0	7119	696	24	4		4	HEPACAM	11	124792502	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	309473	124792502	10214014	894	67749											
CDON	50937	broad.mit.edu	37	chr11	125850910	125850910	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacttggcaccctgagggaCagaggggcttttatttatag	13	7	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125850910	G	G	125850910	1	3	60	0	1	0	0	0	0	0	0	0	3200	493	17	4		4	CDON	11	125850910	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1058408	125850910	9155606	895	67750											
PRDM10	56980	broad.mit.edu	37	chr11	129785792	129785792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgccatgaaagcagtataCagttccactttcttgcttaa	6	10	1	1	rs145526575	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129785792	A	A	129785792	1	1	60	0	1	0	0	0	0	0	0	0	12557	493	17	3		3	PRDM10	11	129785792	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3934882	129785792	5220724	896	67751											
NTM	50863	broad.mit.edu	37	chr11	131727982	131727982	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacattttatcatactgagCtcttatgaggttctggaata	7	7	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131727982	T	T	131727982	1	4	60	0	1	0	0	0	0	0	0	0	10794	812	28	4		4	NTM	11	131727982	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1942190	131727982	3278534	897	67752											
OPCML	4978	broad.mit.edu	37	chr11	132643466	132643466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatggtggcattttcttaCctcccaattaaccttcacat	4	12	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132643466	A	A	132643466	1	1	60	0	1	0	0	0	0	0	0	0	10968	522	18	3		3	OPCML	11	132643466	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	915484	132643466	2363050	898	67753											
IGSF9B	22997	broad.mit.edu	37	chr11	133806017	133806017	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccggatacgcctctgccCggcaggtgagcagagcatcc	13	15	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133806017	T	T	133806017	3	4	60	1	0	0	0	0	1	0	0	0	7676	652	23	4	3353	4	IGSF9B	11	133806017	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1162551	133806017	1200499	899	67754											
LRTM2	654429	broad.mit.edu	37	chr12	1940101	1940101	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtctgtccctcccaccaagGgatcacctgctggatcgccc	9	18	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1940101	A	A	1940101	4	1	60	1	0	0	0	0	0	1	0	0	9132	1246	43	4	74	4	LRTM2	12	1940101	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08		1940101	131911794	900	67755											
EFCAB4B	84766	broad.mit.edu	37	chr12	3806162	3806162	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccctcccgtcaggggcagCcatcgcgattagtcagtttc	10	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3806162	G	G	3806162	3	3	60	1	0	0	0	0	1	0	0	0	4977	739	26	4	2451	4	EFCAB4B	12	3806162	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1866061	3806162	130045733	901	67756											
ANO2	57101	broad.mit.edu	37	chr12	5886664	5886664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaactgaggggaccaaaaGgccaatgtggggcttgtaaa	14	6	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5886664	T	T	5886664	1	4	60	0	1	0	0	0	0	0	0	0	697	1015	35	2		2	ANO2	12	5886664	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2080502	5886664	127965231	902	67757											
PTMS	5763	broad.mit.edu	37	chr12	6879553	6879553	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccccattctctccctctcCacaggatgaagcggatccca	6	18	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6879553	T	T	6879553	1	4	60	0	1	0	0	0	0	0	0	0	12873	609	21	4		4	PTMS	12	6879553	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	992889	6879553	126972342	903	67758											
LAG3	3902	broad.mit.edu	37	chr12	6886480	6886480	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctggggaagctgctttgtGaggtgactccagtatctgga	14	9	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6886480	C	C	6886480	3	2	60	1	0	0	0	0	1	0	0	0	8672	1291	45	4	1130	4	LAG3	12	6886480	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6927	6886480	126965415	904	67759											
USP5	8078	broad.mit.edu	37	chr12	6967789	6967789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccagaggaagtgagtaGtgccctctccttccccaggc	10	14	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6967789	T	T	6967789	1	4	60	0	1	0	0	0	0	0	0	0	17208	1044	36	3		3	USP5	12	6967789	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	81309	6967789	126884106	905	67760											
CD163L1	283316	broad.mit.edu	37	chr12	7556286	7556286	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggtttagcacgacgactgCcaaagacgctgaacggacat	11	10	0	2	rs145190922		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7556286	T	T	7556286	3	4	60	1	0	0	0	0	1	0	0	0	2998	739	26	4	3164	4	CD163L1	12	7556286	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	588497	7556286	126295609	906	67761											
SLC2A3	6515	broad.mit.edu	37	chr12	8074159	8074159	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgggtctcagggactttgaaGaaggtaaaagccaagaaggt	14	6	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8074159	T	T	8074159	3	4	60	1	0	0	0	0	1	0	0	0	14659	933	33	3	153	3	SLC2A3	12	8074159	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	517873	8074159	125777736	907	67762											
A2M	2	broad.mit.edu	37	chr12	9248426	9248426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcagtggcgcaatctcgGctcactgcaagctccgcttc	10	15	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9248426	T	T	9248426	1	4	60	0	1	0	0	0	0	0	0	0	4	1218	42	3		3	A2M	12	9248426	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1174267	9248426	124603469	908	67763											
CLEC9A	283420	broad.mit.edu	37	chr12	10198304	10198304	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatgaagaaatcaatagCcataaattggttatttcttc	6	6	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10198304	G	G	10198304	1	3	60	0	1	0	0	0	0	0	0	0	3554	754	26	4		4	CLEC9A	12	10198304	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	949878	10198304	123653591	909	67764											
KLRC1	3821	broad.mit.edu	37	chr12	10603248	10603248	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttagaagattcacagacaAgagaacctgaatgcacagga	10	7	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10603248	G	G	10603248	1	3	60	0	1	0	0	0	0	0	0	0	8486	87	3	5		5	KLRC1	12	10603248	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	404944	10603248	123248647	910	67765											
TAS2R50	259296	broad.mit.edu	37	chr12	11139452	11139452	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaatgtatagaaaaGttatcatatctgagcagaaa	6	3	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11139452	C	C	11139452	3	2	60	1	0	0	0	0	1	0	0	0	15703	1029	36	4	895	4	TAS2R50	12	11139452	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	536204	11139452	122712443	911	67766											
GRIN2B	2904	broad.mit.edu	37	chr12	14018818	14018818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaatcgaggatctgggCgatggcttcctggtctgtgt	14	7	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14018818	A	A	14018818	3	1	60	1	0	0	0	0	1	0	0	0	6846	768	27	3	4177	3	GRIN2B	12	14018818	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2879366	14018818	119833077	912	67767											
PIK3C2G	5288	broad.mit.edu	37	chr12	18511589	18511589	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatcctcagctggtcagcatCatcaaaatcatcctgtccca	5	14	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18511589	T	T	18511589	1	4	60	0	1	0	0	0	0	0	0	0	12006	841	29	4		4	PIK3C2G	12	18511589	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4492771	18511589	115340306	913	67768											
SLCO1B3	28234	broad.mit.edu	37	chr12	21030768	21030768	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttatatttctgcttttgAcattgttacaagtaagcagc	7	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21030768	T	T	21030768	3	4	60	1	0	0	0	0	1	0	0	0	14838	275	10	5	1063	5	SLCO1B3	12	21030768	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2519179	21030768	112821127	914	67769											
SOX5	6660	broad.mit.edu	37	chr12	23764304	23764305	+	Intron	DEL	GT	-	-													catcgtgtgtgtgtgtgtgcGtgtgtgtgtgtgtgtgtgtg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23764305	-	-	23764304	6	5	60	0	1	1	0	1	0	0	0	0	15068	1160	40	0		0	SOX5	12	23764304	Intron	DEL	GT	TCGA-17-Z030-01A-01W-0746-08	2733536	23764304	110087591	915	67770											
ITPR2	3709	broad.mit.edu	37	chr12	26845167	26845168	+	Intron	INS	-	G	G													tagaccggtggttctcaacaINSgggaatgatatttgccccca					rs145535530	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26845168	G	G	26845167	6	5	60	0	1	1	1	0	0	0	0	0	7991	203	7	0		0	ITPR2	12	26845167	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	3080863	26845167	107006728	916	67771											
PTHLH	5744	broad.mit.edu	37	chr12	28123114	28123114	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcggcagccccgcttcacGggcggggagacatgctggcc	17	14	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28123114	T	T	28123114	1	4	60	0	1	0	0	0	0	0	0	0	12867	1131	39	1		1	PTHLH	12	28123114	5'Flank	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1277947	28123114	105728781	917	67772											
C12orf40	283461	broad.mit.edu	37	chr12	40076657	40076657	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatcaatgtattaaacataGatgagcaaaggataaagaaa	8	3	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40076657	T	T	40076657	3	4	60	1	0	0	0	0	1	0	0	0	1699	942	33	3	961	3	C12orf40	12	40076657	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	11953543	40076657	93775238	918	67773											
CNTN1	1272	broad.mit.edu	37	chr12	41316172	41316172	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgctggaatatactactgTttagcatctaataactacgg	8	7	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41316172	C	C	41316172	2	2	60	1	0	0	0	0	0	0	0	1	3672	1731	60	5		5	CNTN1	12	41316172	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1239515	41316172	92535723	919	67774											
CNTN1	1272	broad.mit.edu	37	chr12	41414184	41414184	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgtaaaagtcttatcatCttctgagatatctgttcatt	7	6	6	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41414184	T	T	41414184	3	4	60	1	0	0	0	0	1	0	0	0	3672	913	32	4	2539	4	CNTN1	12	41414184	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	98012	41414184	92437711	920	67775											
PDZRN4	29951	broad.mit.edu	37	chr12	41900185	41900185	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttgaaacctttctctctgTcttttattaatctatcatga	5	8	5	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41900185	C	C	41900185	1	2	60	0	1	0	0	0	0	0	0	0	11804	1682	58	5		5	PDZRN4	12	41900185	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	486001	41900185	91951710	921	67776											
ADAMTS20	80070	broad.mit.edu	37	chr12	43944788	43944788	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcggtagaagcagtggcgcAggtccgagggccctgcgtcg	18	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43944788	T	T	43944788	3	4	60	1	0	0	0	0	1	0	0	0	266	188	7	5	5506	5	ADAMTS20	12	43944788	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2044603	43944788	89907107	922	67777											
NELL2	4753	broad.mit.edu	37	chr12	45072974	45072974	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttctattccactgaaactAgggagaaggaagaaagggtg	13	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45072974	T	T	45072974	1	4	60	0	1	0	0	0	0	0	0	0	10429	435	15	5		5	NELL2	12	45072974	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1128186	45072974	88778921	923	67778											
NELL2	4753	broad.mit.edu	37	chr12	45169837	45169837	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcttacagccgtctatccAggactcaaattctcggtagg	9	11	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45169837	T	T	45169837	3	4	60	1	0	0	0	0	1	0	0	0	10429	188	7	5	1643	5	NELL2	12	45169837	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	96863	45169837	88682058	924	67779											
PRPF40B	25766	broad.mit.edu	37	chr12	50029566	50029566	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccccaggtcctcctctgcCcaggcctacttgggtagctc	9	17	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50029566	T	T	50029566	1	4	60	0	1	0	0	0	0	0	0	0	12678	638	22	4		4	PRPF40B	12	50029566	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4859729	50029566	83822329	925	67780											
FAIM2	23017	broad.mit.edu	37	chr12	50281194	50281194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatacacccgctcccagtGctgcataaactgcatggagc	8	13	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50281194	T	T	50281194	3	4	60	1	0	0	0	0	1	0	0	0	5422	1319	46	3	182	3	FAIM2	12	50281194	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	251628	50281194	83570701	926	67781											
SCN8A	6334	broad.mit.edu	37	chr12	52107304	52107305	+	Intron	INS	-	T	T													ttctcaactgctctggttccINStttgggtcatggccctcttc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52107305	T	T	52107304	6	5	60	0	1	1	1	0	0	0	0	0	14037	696	24	0		0	SCN8A	12	52107304	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	1826110	52107304	81744591	927	67782											
ANKRD33	341405	broad.mit.edu	37	chr12	52284917	52284917	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggatagcaccagccccaGgccccaagtccccaagatcc	9	18	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52284917	C	C	52284917	1	2	60	0	1	0	0	0	0	0	0	0	661	1000	35	4		4	ANKRD33	12	52284917	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	177613	52284917	81566978	928	67783											
KRT81	3887	broad.mit.edu	37	chr12	52682308	52682308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagactcctctctctgcCcatccattccatgtagccag	5	19	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52682308	A	A	52682308	1	1	60	0	1	0	0	0	0	0	0	0	8566	638	22	2		2	KRT81	12	52682308	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	397391	52682308	81169587	929	67784											
KRT75	9119	broad.mit.edu	37	chr12	52822430	52822430	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacgctgtcaatctcagctCtcagcctctggatcatgcgg	10	13	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52822430	A	A	52822430	3	1	60	1	0	0	0	0	1	0	0	0	8559	913	32	3	538	3	KRT75	12	52822430	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	140122	52822430	81029465	930	67785											
KRT72	140807	broad.mit.edu	37	chr12	52986720	52986720	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcagctgtgcgtctgtTaatctccacctcatacctgc	7	15	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52986720	A	A	52986720	3	1	60	1	0	0	0	0	1	0	0	0	8556	1754	61	5	905	5	KRT72	12	52986720	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	164290	52986720	80865175	931	67786											
HOXC8	3224	broad.mit.edu	37	chr12	54403564	54403564	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagggtttccccccctccCtcgcctcctttttgtctgcc	6	20	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54403564	G	G	54403564	1	3	60	0	1	0	0	0	0	0	0	0	7383	696	24	4		4	HOXC8	12	54403564	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1416844	54403564	79448331	932	67787											
ITGA5	3678	broad.mit.edu	37	chr12	54802768	54802768	+	Intron	DEL	C	-	-													gagaaggtggtgaaaatgagCcctgcatagatgggtcatcc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54802768	-	-	54802768	6	5	60	0	1	1	0	1	0	0	0	0	7949	754	26	0		0	ITGA5	12	54802768	Intron	DEL	C	TCGA-17-Z030-01A-01W-0746-08	399204	54802768	79049127	933	67788											
NCKAP1L	3071	broad.mit.edu	37	chr12	54928369	54928369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagatctaagggatggaCgtaacagatataaatagagg	13	3	1	3	rs145066566	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54928369	A	A	54928369	1	1	60	0	1	0	0	0	0	0	0	0	10317	551	19	3		3	NCKAP1L	12	54928369	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	125601	54928369	78923526	934	67789											
OR6C74	254783	broad.mit.edu	37	chr12	55641662	55641662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacataatagaattaatgatGcttctctcagccattttgac	6	8	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55641662	T	T	55641662	3	4	60	1	0	0	0	0	1	0	0	0	11292	1319	46	3	593	3	OR6C74	12	55641662	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	713293	55641662	78210233	935	67790											
MMP19	4327	broad.mit.edu	37	chr12	56231219	56231219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcttaggacccccaggGgtccacccccagcccactgc	11	18	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56231219	T	T	56231219	1	4	60	0	1	0	0	0	0	0	0	0	9750	1247	43	2		2	MMP19	12	56231219	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	589557	56231219	77620676	936	67791											
PRIM1	5557	broad.mit.edu	37	chr12	57140726	57140726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctacaacatctcctcaCatcgtcatagtctgtcatgt	4	14	6	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57140726	A	A	57140726	3	1	60	1	0	0	0	0	1	0	0	0	12596	478	17	3	954	3	PRIM1	12	57140726	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	909507	57140726	76711169	937	67792											
LRP1	4035	broad.mit.edu	37	chr12	57552240	57552240	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggccaggcatcatccgGggcatggatatgggggccaa	17	11	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57552240	T	T	57552240	2	4	60	1	0	0	0	0	0	0	0	1	9038	1219	43	2		2	LRP1	12	57552240	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	411514	57552240	76299655	938	67793											
MBD6	114785	broad.mit.edu	37	chr12	57921446	57921446	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggtgccagcctgctgggtGagtctgagggagtgtgaatt	18	6	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57921446	T	T	57921446	1	4	60	0	1	0	0	0	0	0	0	0	9441	1305	45	3		3	MBD6	12	57921446	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	369206	57921446	75930449	939	67794											
B4GALNT1	2583	broad.mit.edu	37	chr12	58020522	58020523	+	3'UTR	DNP	GG	TT	TT													acagtcagaaatccccagcgGgccatcactgggaggtcatg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	58020523	TT	TT	58020522	1	4	60	0	1	0	0	0	0	0	0	0	1271	1247	43	2		2	B4GALNT1	12	58020522	3'UTR	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	99076	58020522	75831373	940	67795											
DPY19L2	283417	broad.mit.edu	37	chr12	64045615	64045615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaactggctgtcagcaGcgatgggtagttagatttcc	13	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64045615	T	T	64045615	1	4	60	0	1	0	0	0	0	0	0	0	4781	986	34	3		3	DPY19L2	12	64045615	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6025093	64045615	69806280	941	67796											
MDM1	56890	broad.mit.edu	37	chr12	68709049	68709049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggcttgtaggatctctgCgtaacaaaatcaattttatt	7	6	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68709049	A	A	68709049	1	1	60	0	1	0	0	0	0	0	0	0	9505	783	27	3		3	MDM1	12	68709049	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4663434	68709049	65142846	942	67797											
CPM	1368	broad.mit.edu	37	chr12	69263141	69263141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtatccatttgtaacacCattaggaaagttcattttgt	7	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69263141	A	A	69263141	3	1	60	1	0	0	0	0	1	0	0	0	3840	594	21	2	596	2	CPM	12	69263141	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	554092	69263141	64588754	943	67798											
PTPRB	5787	broad.mit.edu	37	chr12	70928553	70928553	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggaaccagcgaaagtggGgttcacagatctcattcatc	11	9	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70928553	A	A	70928553	1	1	60	0	1	0	0	0	0	0	0	0	12904	1247	43	4		4	PTPRB	12	70928553	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1665412	70928553	62923342	944	67799											
PTPRB	5787	broad.mit.edu	37	chr12	70949044	70949044	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaagacttgctaattagcAcatccttttcattcacacga	6	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70949044	T	T	70949044	3	4	60	1	0	0	0	0	1	0	0	0	12904	159	6	5	1668	5	PTPRB	12	70949044	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	20491	70949044	62902851	945	67800											
PTPRB	5787	broad.mit.edu	37	chr12	70988239	70988239	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcttcagctagctaggggGaacttacctgtcctgactag	10	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70988239	A	A	70988239	1	1	60	0	1	0	0	0	0	0	0	0	12904	1189	41	4		4	PTPRB	12	70988239	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	39195	70988239	62863656	946	67801											
LGR5	8549	broad.mit.edu	37	chr12	71898398	71898398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttttcccccccagagacCtcagtatgaacaacatcagt	6	14	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71898398	A	A	71898398	3	1	60	1	0	0	0	0	1	0	0	0	8829	681	24	2	223	2	LGR5	12	71898398	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	910159	71898398	61953497	947	67802											
LGR5	8549	broad.mit.edu	37	chr12	71918219	71918219	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgctctgacatacattccCaagggagcattcactggcct	8	13	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71918219	A	A	71918219	2	1	60	1	0	0	0	0	0	0	0	1	8829	581	21	2		2	LGR5	12	71918219	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	19821	71918219	61933676	948	67803											
ZFC3H1	196441	broad.mit.edu	37	chr12	72057190	72057190	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagagccaccgcctccGccagatccaccgccccgggc	12	19	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72057190	A	A	72057190	2	1	60	1	0	0	0	0	0	0	0	1	17759	1074	38	4		4	ZFC3H1	12	72057190	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	138971	72057190	61794705	949	67804											
KCNC2	3747	broad.mit.edu	37	chr12	75436086	75436086	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgttttgtgccttcccCaagtcattaagtaagagatc	7	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75436086	A	A	75436086	1	1	60	0	1	0	0	0	0	0	0	0	8085	609	21	2		2	KCNC2	12	75436086	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3378896	75436086	58415809	950	67805											
KCNC2	3747	broad.mit.edu	37	chr12	75601247	75601248	+	Frame_Shift_Ins	INS	-	G	G													gggtcgccgccaatgaggtcINSgggggtctcgaagatgtcca							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75601248	G	G	75601247	7	5	60	1	0	1	1	0	0	0	0	0	8085	884	31	0	1481	0	KCNC2	12	75601247	Frame_Shift_Ins	INS	-	TCGA-17-Z030-01A-01W-0746-08	165161	75601247	58250648	951	67806											
CAPS2	84698	broad.mit.edu	37	chr12	75692736	75692736	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgagctctctgcaagcatCacgtccattactggaaaaat	7	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75692736	A	A	75692736	3	1	60	1	0	0	0	0	1	0	0	0	2664	826	29	3	783	3	CAPS2	12	75692736	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	91489	75692736	58159159	952	67807											
NAV3	89795	broad.mit.edu	37	chr12	78401137	78401137	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcacaaagcagtgggCagagcacaggaaatggtgct	15	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78401137	G	G	78401137	3	3	60	1	0	0	0	0	1	0	0	0	10279	711	25	4	1849	4	NAV3	12	78401137	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2708401	78401137	55450758	953	67808											
NAV3	89795	broad.mit.edu	37	chr12	78570899	78570899	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaaatagacaagaaggGtaatttctgtccttgtttca	9	6	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78570899	C	C	78570899	1	2	60	0	1	0	0	0	0	0	0	0	10279	1276	44	4		4	NAV3	12	78570899	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	169762	78570899	55280996	954	67809											
SYT1	6857	broad.mit.edu	37	chr12	79747444	79747444	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttcaaatgctgtttcgtCgtggataccaaatgcatggc	9	8	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79747444	A	A	79747444	1	1	60	0	1	0	0	0	0	0	0	0	15584	899	31	3		3	SYT1	12	79747444	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1176545	79747444	54104451	955	67810											
PPFIA2	8499	broad.mit.edu	37	chr12	81747225	81747225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcttttacaactgaccttGcaaaaactgaaccaattatt	4	9	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81747225	T	T	81747225	1	4	60	0	1	0	0	0	0	0	0	0	12406	1334	46	3		3	PPFIA2	12	81747225	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1999781	81747225	52104670	956	67811											
PPFIA2	8499	broad.mit.edu	37	chr12	81839421	81839421	+	Frame_Shift_Del	DEL	G	-	-													ggatactcctgagggagactGggcttgccgttttaccaccg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81839421	-	-	81839421	7	5	60	1	0	1	0	1	0	0	0	0	12406	1357	47	0	3397	0	PPFIA2	12	81839421	Frame_Shift_Del	DEL	G	TCGA-17-Z030-01A-01W-0746-08	92196	81839421	52012474	957	67812											
SLC6A15	55117	broad.mit.edu	37	chr12	85267179	85267179	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattaatttttatggaatttActgtttatggagtatacaat	6	2	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85267179	T	T	85267179	1	4	60	0	1	0	0	0	0	0	0	0	14792	406	14	5		5	SLC6A15	12	85267179	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3427758	85267179	48584716	958	67813											
ALX1	8092	broad.mit.edu	37	chr12	85695047	85695047	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attctcactcgcctcggacaGattccagttacacggggttt	9	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85695047	C	C	85695047	3	2	60	1	0	0	0	0	1	0	0	0	556	942	33	4	789	4	ALX1	12	85695047	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	427868	85695047	48156848	959	67814											
C12orf50	160419	broad.mit.edu	37	chr12	88391781	88391781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgaggtttttgaatgtGtattgtaaacctgaaaaaag	10	2	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88391781	T	T	88391781	1	4	60	0	1	0	0	0	0	0	0	0	1708	1392	48	3		3	C12orf50	12	88391781	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2696734	88391781	45460114	960	67815											
C12orf50	160419	broad.mit.edu	37	chr12	88420921	88420921	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaacaataggttgctaatTagttaaacgaaatatgagta	7	4	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88420921	C	C	88420921	1	2	60	0	1	0	0	0	0	0	0	0	1708	1769	61	5		5	C12orf50	12	88420921	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	29140	88420921	45430974	961	67816											
LUM	4060	broad.mit.edu	37	chr12	91498045	91498045	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaacgcaaatgcttgatcTtggagtaggataatggcccc	10	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91498045	A	A	91498045	3	1	60	1	0	0	0	0	1	0	0	0	9172	1609	56	5	106	5	LUM	12	91498045	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3077124	91498045	42353850	962	67817											
C12orf74	338809	broad.mit.edu	37	chr12	93100912	93100912	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctacgacaccctagtcctCaggtaacacagctctaagcc	6	17	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93100912	T	T	93100912	4	4	60	1	0	0	0	0	0	1	0	0	1727	827	29	4	507	4	C12orf74	12	93100912	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1602867	93100912	40750983	963	67818											
METAP2	10988	broad.mit.edu	37	chr12	95889043	95889043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatttcattaggaaaggtGtgttgaggcagatttttaaa	10	4	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95889043	T	T	95889043	1	4	60	0	1	0	0	0	0	0	0	0	9580	1392	48	3		3	METAP2	12	95889043	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2788131	95889043	37962852	964	67819											
NEDD1	121441	broad.mit.edu	37	chr12	97334181	97334181	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttttatatctaattccTataaggtttgcctcgaagca	6	7	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97334181	A	A	97334181	1	1	60	0	1	0	0	0	0	0	0	0	10404	1537	53	5		5	NEDD1	12	97334181	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1445138	97334181	36517714	965	67820											
ANKS1B	56899	broad.mit.edu	37	chr12	99548216	99548216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtttaagcagggagtagcCgtccacggggtaatagcggt	16	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99548216	A	A	99548216	1	1	60	0	1	0	0	0	0	0	0	0	689	652	23	1		1	ANKS1B	12	99548216	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2214035	99548216	34303679	966	67821											
ANKS1B	56899	broad.mit.edu	37	chr12	100169247	100169247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatatagagtataggatatAacctattagacttgaaattt	6	3	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100169247	T	T	100169247	1	4	60	0	1	0	0	0	0	0	0	0	689	377	13	5		5	ANKS1B	12	100169247	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	621031	100169247	33682648	967	67822											
DEPDC4	120863	broad.mit.edu	37	chr12	100656028	100656028	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accatgttctgaaaaaataaTgaaaacaaattaccttcttt	3	7	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100656028	C	C	100656028	1	2	60	0	1	0	0	0	0	0	0	0	4481	1479	51	5		5	DEPDC4	12	100656028	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	486781	100656028	33195867	968	67823											
GAS2L3	283431	broad.mit.edu	37	chr12	101005919	101005919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgaatctgaaggtttaGgtaagtgatgttcttgtcat	10	4	4	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101005919	T	T	101005919	3	4	60	1	0	0	0	0	1	0	0	0	6310	1014	35	2	459	2	GAS2L3	12	101005919	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	349891	101005919	32845976	969	67824											
ANO4	121601	broad.mit.edu	37	chr12	101436059	101436059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatacgaagtttcataatGcttaactttacacactgcac	4	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101436059	T	T	101436059	1	4	60	0	1	0	0	0	0	0	0	0	699	1334	46	3		3	ANO4	12	101436059	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	430140	101436059	32415836	970	67825											
SLC5A8	160728	broad.mit.edu	37	chr12	101577806	101577806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagattgcctactttgggcCatctgtgtctgtgcccagaa	11	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101577806	A	A	101577806	1	1	60	0	1	0	0	0	0	0	0	0	14785	609	21	2		2	SLC5A8	12	101577806	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	141747	101577806	32274089	971	67826											
SLC5A8	160728	broad.mit.edu	37	chr12	101603406	101603406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacggtagacctcggaggggGtgcccaggacagtgacggct	17	10	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101603406	T	T	101603406	3	4	60	1	0	0	0	0	1	0	0	0	14785	1261	44	3	1671	3	SLC5A8	12	101603406	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	25600	101603406	32248489	972	67827											
UTP20	27340	broad.mit.edu	37	chr12	101740177	101740177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgatactaaaatggagctGgttgtaggtgagattattcg	12	4	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101740177	T	T	101740177	1	4	60	0	1	0	0	0	0	0	0	0	17226	1363	47	2		2	UTP20	12	101740177	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	136771	101740177	32111718	973	67828											
STAB2	55576	broad.mit.edu	37	chr12	104062572	104062572	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcagctccagggccatgctCttgggtcctagggtccacgt	14	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104062572	T	T	104062572	1	4	60	0	1	0	0	0	0	0	0	0	15356	928	32	4		4	STAB2	12	104062572	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2322395	104062572	29789323	974	67829											
STAB2	55576	broad.mit.edu	37	chr12	104122592	104122592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgcagcaaaagactcctGcctctggctgaaaccctctg	8	14	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104122592	T	T	104122592	1	4	60	0	1	0	0	0	0	0	0	0	15356	1334	46	3		3	STAB2	12	104122592	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	60020	104122592	29729303	975	67830											
EID3	493861	broad.mit.edu	37	chr12	104698156	104698156	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatgatagcatagctctTtccttctggaaggcaataga	10	7	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104698156	G	G	104698156	2	3	60	1	0	0	0	0	0	0	0	1	5029	1828	64	5		5	EID3	12	104698156	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	575564	104698156	29153739	976	67831											
FOXN4	121643	broad.mit.edu	37	chr12	109719546	109719546	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggggcctctggttccccCggtttgccggggcgccggca	17	15	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109719546	A	A	109719546	2	1	60	1	0	0	0	0	0	0	0	1	6082	639	23	1		1	FOXN4	12	109719546	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5021390	109719546	24132349	977	67832											
CCDC63	160762	broad.mit.edu	37	chr12	111317818	111317818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatgtctaccagcagctcCagcactgcctgttgatggag	10	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111317818	A	A	111317818	3	1	60	1	0	0	0	0	1	0	0	0	2862	595	21	2	616	2	CCDC63	12	111317818	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1598272	111317818	22534077	978	67833											
RPH3A	22895	broad.mit.edu	37	chr12	113307697	113307697	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcatgctcttctttccaGgccctgacccagcctctgct	6	16	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113307697	T	T	113307697	5	4	60	1	0	0	0	0	0	0	1	0	13662	1014	35	2	679	2	RPH3A	12	113307697	Splice_Site	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1989879	113307697	20544198	979	67834											
OAS1	4938	broad.mit.edu	37	chr12	113354604	113354604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacctggatacaggtacaGtgccttggaaatggaggagg	14	7	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113354604	T	T	113354604	1	4	60	0	1	0	0	0	0	0	0	0	10894	1044	36	3		3	OAS1	12	113354604	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	46907	113354604	20497291	980	67835											
TPCN1	53373	broad.mit.edu	37	chr12	113728635	113728635	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggagctcacaacccaagCggtcatatggtgaccctctc	9	15	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113728635	G	G	113728635	1	3	60	0	1	0	0	0	0	0	0	0	16519	783	27	4		4	TPCN1	12	113728635	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	374031	113728635	20123260	981	67836											
SLC24A6	80024	broad.mit.edu	37	chr12	113758557	113758557	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccaggccttcgaccctatCccccagcttccccacacggg	7	21	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113758557	A	A	113758557	1	1	60	0	1	0	0	0	0	0	0	0	14584	870	30	3		3	SLC24A6	12	113758557	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	29922	113758557	20093338	982	67837											
SDSL	113675	broad.mit.edu	37	chr12	113867258	113867258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaggggggaatgaggtGggatgggtgttgagggctgg	24	2	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113867258	T	T	113867258	1	4	60	0	1	0	0	0	0	0	0	0	14089	1363	47	2		2	SDSL	12	113867258	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	108701	113867258	19984637	983	67838											
TBX5	6910	broad.mit.edu	37	chr12	114842278	114842278	+	Intron	DEL	A	-	-													tgaaataacccgcctcttgcAaaaagaaaaacacagaaggg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114842278	-	-	114842278	6	5	60	0	1	1	0	1	0	0	0	0	15783	145	5	0		0	TBX5	12	114842278	Intron	DEL	A	TCGA-17-Z030-01A-01W-0746-08	975020	114842278	19009617	984	67839											
CCDC60	160777	broad.mit.edu	37	chr12	119960637	119960637	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgccttgattagaaccaccTcccatgcctgaatcctggaa	8	13	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119960637	A	A	119960637	1	1	60	0	1	0	0	0	0	0	0	0	2859	1566	54	5		5	CCDC60	12	119960637	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	5118359	119960637	13891258	985	67840											
CCDC60	160777	broad.mit.edu	37	chr12	119960833	119960833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagggcaatggaaggaaCcacgcaagagggaatatggt	16	6	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119960833	A	A	119960833	1	1	60	0	1	0	0	0	0	0	0	0	2859	522	18	3		3	CCDC60	12	119960833	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	196	119960833	13891062	986	67841											
RSRC2	65117	broad.mit.edu	37	chr12	123005117	123005117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagttcagtctcttcgCgcataagcacgctgagtatg	9	11	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123005117	A	A	123005117	1	1	60	0	1	0	0	0	0	0	0	0	13826	783	27	3		3	RSRC2	12	123005117	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3044284	123005117	10846778	987	67842											
TMEM132D	121256	broad.mit.edu	37	chr12	129559256	129559256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgggccttctgtcactgaCattgttttccatgtgaaccc	8	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129559256	A	A	129559256	3	1	60	1	0	0	0	0	1	0	0	0	16170	478	17	3	839	3	TMEM132D	12	129559256	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6554139	129559256	4292639	988	67843											
TMEM132D	121256	broad.mit.edu	37	chr12	129822151	129822151	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctcccccgagttcagttCtaacagcccagggcggggct	11	17	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129822151	A	A	129822151	1	1	60	0	1	0	0	0	0	0	0	0	16170	928	32	3		3	TMEM132D	12	129822151	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	262895	129822151	4029744	989	67844											
FZD10	11211	broad.mit.edu	37	chr12	130647912	130647912	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaactccccaacaagaacgAccccaactacctgtgcatgg	7	15	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130647912	T	T	130647912	3	4	60	1	0	0	0	0	1	0	0	0	6189	275	10	5	427	5	FZD10	12	130647912	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	825761	130647912	3203983	990	67845											
PIWIL1	9271	broad.mit.edu	37	chr12	130839155	130839155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagagaaggcggggccctgGggggacactgccagggcctg	19	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130839155	T	T	130839155	3	4	60	1	0	0	0	0	1	0	0	0	12052	1232	43	2	1152	2	PIWIL1	12	130839155	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	191243	130839155	3012740	991	67846											
RIMBP2	23504	broad.mit.edu	37	chr12	130926866	130926866	+	Frame_Shift_Del	DEL	C	-	-													cgttgtagctgctcaccgttCcccatcctggtggcaccgcc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130926866	-	-	130926866	7	5	60	1	0	1	0	1	0	0	0	0	13472	855	30	0	2226	0	RIMBP2	12	130926866	Frame_Shift_Del	DEL	C	TCGA-17-Z030-01A-01W-0746-08	87711	130926866	2925029	992	67847											
ANKLE2	23141	broad.mit.edu	37	chr12	133313587	133313587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccgtctggtctggggaCcacagctccccgatgactgg	13	14	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133313587	A	A	133313587	3	1	60	1	0	0	0	0	1	0	0	0	633	508	18	3	1355	3	ANKLE2	12	133313587	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2386721	133313587	538308	993	67848											
ATP12A	479	broad.mit.edu	37	chr13	25273153	25273153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggatgctgtgtgacagCaccaagcagggtgggatggc	18	7	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25273153	A	A	25273153	1	1	60	0	1	0	0	0	0	0	0	0	1126	725	25	3		3	ATP12A	13	25273153	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08		25273153	89896725	994	67849											
ATP8A2	51761	broad.mit.edu	37	chr13	26127930	26127930	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactctggtttccttccacaGacaccacctcagataatttt	4	13	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26127930	T	T	26127930	5	4	60	1	0	0	0	0	0	0	1	0	1197	956	33	3	1103	3	ATP8A2	13	26127930	Splice_Site	SNP	G	TCGA-17-Z030-01A-01W-0746-08	854777	26127930	89041948	995	67850											
WASF3	10810	broad.mit.edu	37	chr13	27151524	27151524	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgccaaatccggaagaatatGatggaaatcaagacccggga	11	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27151524	A	A	27151524	1	1	60	0	1	0	0	0	0	0	0	0	17381	1305	45	4		4	WASF3	13	27151524	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1023594	27151524	88018354	996	67851											
SLC7A1	6541	broad.mit.edu	37	chr13	30091809	30091809	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaagagaacatctctgcctCtggtaaaaagcccagctggg	10	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30091809	T	T	30091809	3	4	60	1	0	0	0	0	1	0	0	0	14806	922	32	4	494	4	SLC7A1	13	30091809	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2940285	30091809	85078069	997	67852											
FRY	10129	broad.mit.edu	37	chr13	32783375	32783375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggataaatagtggtgatGgttgcacagaaatatgaatg	14	2	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32783375	T	T	32783375	1	4	60	0	1	0	0	0	0	0	0	0	6123	1363	47	2		2	FRY	13	32783375	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2691566	32783375	82386503	998	67853											
SOHLH2	54937	broad.mit.edu	37	chr13	36767892	36767892	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatattaaatattgacctTatagtttctatttagagaaa	4	3	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36767892	A	A	36767892	1	1	60	0	1	0	0	0	0	0	0	0	15038	1769	61	5		5	SOHLH2	13	36767892	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3984517	36767892	78401986	999	67854											
TRPC4	7223	broad.mit.edu	37	chr13	38320458	38320458	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttacagcggacctcgtgGggtcgaggcactgagactcc	14	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38320458	T	T	38320458	2	4	60	1	0	0	0	0	0	0	0	1	16705	1219	43	2		2	TRPC4	13	38320458	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1552566	38320458	76849420	1000	67855											
LCP1	3936	broad.mit.edu	37	chr13	46724988	46724988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctgaagagaggaagccCcaaatctttatcttttcttt	6	9	4	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46724988	A	A	46724988	1	1	60	0	1	0	0	0	0	0	0	0	8763	638	22	2		2	LCP1	13	46724988	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	8404530	46724988	68444890	1001	67856											
LRCH1	23143	broad.mit.edu	37	chr13	47295728	47295728	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcactctgtccttttactgAccttggctttactttttaaa	5	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47295728	T	T	47295728	1	4	60	0	1	0	0	0	0	0	0	0	9019	290	10	5		5	LRCH1	13	47295728	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	570740	47295728	67874150	1002	67857											
RCBTB2	1102	broad.mit.edu	37	chr13	49075967	49075967	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgggttgtcaaattccctCttcagtgactcagccactgt	8	13	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49075967	A	A	49075967	3	1	60	1	0	0	0	0	1	0	0	0	13280	912	32	3	516	3	RCBTB2	13	49075967	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1780239	49075967	66093911	1003	67858											
PCDH17	27253	broad.mit.edu	37	chr13	58208384	58208384	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacttggagagcaacgccacGgtgagggtgacagtgctaga	15	9	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58208384	C	C	58208384	2	2	60	1	0	0	0	0	0	0	0	1	11606	1103	39	4		4	PCDH17	13	58208384	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	9132417	58208384	56961494	1004	67859											
MYCBP2	23077	broad.mit.edu	37	chr13	77671766	77671766	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctgggaagcagctttgaTagtagccaaagagatgtctt	11	6	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77671766	C	C	77671766	3	2	60	1	0	0	0	0	1	0	0	0	10112	1406	49	5	4625	5	MYCBP2	13	77671766	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	19463382	77671766	37498112	1005	67860											
MYCBP2	23077	broad.mit.edu	37	chr13	77714190	77714190	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatcaattacctcatcaaTaaaagtgatagttccattga	4	7	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77714190	A	A	77714190	3	1	60	1	0	0	0	0	1	0	0	0	10112	1406	49	5	6658	5	MYCBP2	13	77714190	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	42424	77714190	37455688	1006	67861											
SCEL	8796	broad.mit.edu	37	chr13	78133840	78133840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaaatgaattaaccttGccaaaaattgggagctcgcc	8	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78133840	T	T	78133840	1	4	60	0	1	0	0	0	0	0	0	0	14000	1334	46	3		3	SCEL	13	78133840	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	419650	78133840	37036038	1007	67862											
EDNRB	1910	broad.mit.edu	37	chr13	78492186	78492186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgtctccaaccaggccccCttcctcaagcccaccatgat	5	21	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78492186	T	T	78492186	1	4	60	0	1	0	0	0	0	0	0	0	4960	696	24	4		4	EDNRB	13	78492186	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	358346	78492186	36677692	1008	67863											
GPC6	10082	broad.mit.edu	37	chr13	94958395	94958395	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggtgagtattcacagattGataaccatggcggatgcttt	11	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94958395	T	T	94958395	1	4	60	0	1	0	0	0	0	0	0	0	6667	1305	45	3		3	GPC6	13	94958395	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	16466209	94958395	20211483	1009	67864											
FGF14	2259	broad.mit.edu	37	chr13	102902929	102902929	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggcattgaatattatgttCcccttctgggaaaccacggt	9	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102902929	T	T	102902929	1	4	60	0	1	0	0	0	0	0	0	0	5900	870	30	4		4	FGF14	13	102902929	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7944534	102902929	12266949	1010	67865											
SLC10A2	6555	broad.mit.edu	37	chr13	103701760	103701760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtggaacatagctgcgtGttctgcatccccgtttcaaa	10	10	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103701760	T	T	103701760	3	4	60	1	0	0	0	0	1	0	0	0	14487	1368	48	3	256	3	SLC10A2	13	103701760	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	798831	103701760	11468118	1011	67866											
FAM155A	728215	broad.mit.edu	37	chr13	108272983	108272983	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctctattccactactctttGgccagttaggatagaaattg	7	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108272983	C	C	108272983	1	2	60	0	1	0	0	0	0	0	0	0	5511	1363	47	4		4	FAM155A	13	108272983	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4571223	108272983	6896895	1012	67867											
ATP11A	23250	broad.mit.edu	37	chr13	113532725	113532725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgacgcagcgtccaccaGgcgctgggtacagcagcctc	12	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113532725	T	T	113532725	1	4	60	0	1	0	0	0	0	0	0	0	1123	1015	35	2		2	ATP11A	13	113532725	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5259742	113532725	1637153	1013	67868											
ATP4B	496	broad.mit.edu	37	chr13	114309288	114309288	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcaggcacaaaatttaccAcgtcagccattttaacgcac	7	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114309288	T	T	114309288	1	4	60	0	1	0	0	0	0	0	0	0	1150	174	6	5		5	ATP4B	13	114309288	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	776563	114309288	860590	1014	67869											
POTEG	404785	broad.mit.edu	37	chr14	19563548	19563548	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcatcataatgtgtaagtGtttacattaaaaggctagtt	8	4	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19563548	C	C	19563548	1	2	60	0	1	0	0	0	0	0	0	0	12362	1392	48	4		4	POTEG	14	19563548	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08		19563548	87785992	1015	67870											
OR4K15	81127	broad.mit.edu	37	chr14	20443997	20443997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctacccctaaaatgattgCagactttctggttgagcgca	9	10	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20443997	T	T	20443997	3	4	60	1	0	0	0	0	1	0	0	0	11164	710	25	4	322	4	OR4K15	14	20443997	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	880449	20443997	86905543	1016	67871											
OR4K14	122740	broad.mit.edu	37	chr14	20483242	20483242	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggttacccagcataatGgccacatagaccccaaagaa	8	11	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20483242	A	A	20483242	2	1	60	1	0	0	0	0	0	0	0	1	11163	1335	47	4		4	OR4K14	14	20483242	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	39245	20483242	86866298	1017	67872											
TPPP2	122664	broad.mit.edu	37	chr14	21500275	21500275	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctagccccctgaccctGcatgtttaacaccagggagc	9	16	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21500275	T	T	21500275	1	4	60	0	1	0	0	0	0	0	0	0	16538	1334	46	3		3	TPPP2	14	21500275	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1017033	21500275	85849265	1018	67873											
MYH6	4624	broad.mit.edu	37	chr14	23862642	23862642	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatccagggcctgctgaTgggcctcttgtagagctttc	13	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23862642	A	A	23862642	3	1	60	1	0	0	0	0	1	0	0	0	10132	1464	51	5	2873	5	MYH6	14	23862642	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2362367	23862642	83486898	1019	67874											
MYH7	4625	broad.mit.edu	37	chr14	23884152	23884152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattctcctcagctggttGtcactgtggctatggtgcca	10	11	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23884152	T	T	23884152	1	4	60	0	1	0	0	0	0	0	0	0	10133	1392	48	3		3	MYH7	14	23884152	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	21510	23884152	83465388	1020	67875											
DHRS2	10202	broad.mit.edu	37	chr14	24113676	24113676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctcactagaacactggCattggagctggcccccaagg	13	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24113676	A	A	24113676	3	1	60	1	0	0	0	0	1	0	0	0	4530	710	25	3	621	3	DHRS2	14	24113676	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	229524	24113676	83235864	1021	67876											
PRKD1	5587	broad.mit.edu	37	chr14	30066734	30066734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagggatttggtggataCatgaaagctgcattctgaat	11	6	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30066734	A	A	30066734	3	1	60	1	0	0	0	0	1	0	0	0	12624	478	17	3	353	3	PRKD1	14	30066734	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5953058	30066734	77282806	1022	67877											
PRKD1	5587	broad.mit.edu	37	chr14	30100229	30100229	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcagataaaggaatttccTgtgaaagaaaaaaagtacta	7	4	1	3	rs149778265		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30100229	A	A	30100229	5	1	60	1	0	0	0	0	0	0	1	0	12624	1594	55	5	1383	5	PRKD1	14	30100229	Splice_Site	SNP	T	TCGA-17-Z030-01A-01W-0746-08	33495	30100229	77249311	1023	67878											
PRKD1	5587	broad.mit.edu	37	chr14	30108069	30108069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatgattgagaatttgaCctcttctctcgaccaataaa	6	8	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30108069	A	A	30108069	3	1	60	1	0	0	0	0	1	0	0	0	12624	506	18	3	2056	3	PRKD1	14	30108069	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7840	30108069	77241471	1024	67879											
HECTD1	25831	broad.mit.edu	37	chr14	31597790	31597790	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctccaagtggaaaaagcatCggattccagaaggaaaagct	10	9	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31597790	A	A	31597790	1	1	60	0	1	0	0	0	0	0	0	0	7106	899	31	3		3	HECTD1	14	31597790	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1489721	31597790	75751750	1025	67880											
FSCB	84075	broad.mit.edu	37	chr14	44975465	44975465	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcagaaccttcttgtacAacaggtacagttacttcttc	6	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44975465	T	T	44975465	2	4	60	1	0	0	0	0	0	0	0	1	6126	117	5	5		5	FSCB	14	44975465	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	13377675	44975465	62374075	1026	67881											
MDGA2	161357	broad.mit.edu	37	chr14	47351301	47351301	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcaccaaatttggtgagagGagtcagtcggacttcataag	11	7	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47351301	C	C	47351301	3	2	60	1	0	0	0	0	1	0	0	0	9500	1174	41	4	743	4	MDGA2	14	47351301	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2375836	47351301	59998239	1027	67882											
MDGA2	161357	broad.mit.edu	37	chr14	47670033	47670033	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttcagggcagcaggagcCaccatccattttttcttgtc	8	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47670033	T	T	47670033	1	4	60	0	1	0	0	0	0	0	0	0	9500	609	21	4		4	MDGA2	14	47670033	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	318732	47670033	59679507	1028	67883											
WDHD1	11169	broad.mit.edu	37	chr14	55423645	55423645	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccacttccctagcaagacaAttgtaaacaatcagaacctc	4	14	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55423645	C	C	55423645	1	2	60	0	1	0	0	0	0	0	0	0	17398	116	4	5		5	WDHD1	14	55423645	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	7753612	55423645	51925895	1029	67884											
DAAM1	23002	broad.mit.edu	37	chr14	59727528	59727528	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcagtagcagtgggtgtaCtctcaggattggtactttca	11	7	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59727528	T	T	59727528	1	4	60	0	1	0	0	0	0	0	0	0	4248	580	20	4		4	DAAM1	14	59727528	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4303883	59727528	47622012	1030	67885											
C14orf39	317761	broad.mit.edu	37	chr14	60903701	60903701	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagctccaaatgtatgagtTgaagtgtctgatggaaaaga	11	6	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60903701	A	A	60903701	2	1	60	1	0	0	0	0	0	0	0	1	1785	1799	63	5		5	C14orf39	14	60903701	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1176173	60903701	46445839	1031	67886											
SYT16	83851	broad.mit.edu	37	chr14	62536254	62536254	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttctcttctgttttcctgGagagtctatctctgtattcg	7	10	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62536254	T	T	62536254	1	4	60	0	1	0	0	0	0	0	0	0	15591	1189	41	3		3	SYT16	14	62536254	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1632553	62536254	44813286	1032	67887											
SYNE2	23224	broad.mit.edu	37	chr14	64574335	64574335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagaagaggtaagtcctGgttggtaataagtaaactgc	11	5	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64574335	T	T	64574335	1	4	60	0	1	0	0	0	0	0	0	0	15565	1363	47	2		2	SYNE2	14	64574335	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2038081	64574335	42775205	1033	67888											
ZFYVE26	23503	broad.mit.edu	37	chr14	68232827	68232827	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acattacacagatgaaaaatCtttcagcatgtcttgtcaga	6	8	4	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68232827	A	A	68232827	1	1	60	0	1	0	0	0	0	0	0	0	17794	928	32	3		3	ZFYVE26	14	68232827	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3658492	68232827	39116713	1034	67889											
SMOC1	64093	broad.mit.edu	37	chr14	70490231	70490231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcatgggaccaagggCtctctgataaatgagattcc	11	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70490231	A	A	70490231	1	1	60	0	1	0	0	0	0	0	0	0	14915	812	28	3		3	SMOC1	14	70490231	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2257404	70490231	36859309	1035	67890											
SLC8A3	6547	broad.mit.edu	37	chr14	70612588	70612588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggatgattgcaatggcaCtaatgaggggcgccaagaca	15	7	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70612588	A	A	70612588	1	1	60	0	1	0	0	0	0	0	0	0	14822	580	20	3		3	SLC8A3	14	70612588	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	122357	70612588	36736952	1036	67891											
SLC8A3	6547	broad.mit.edu	37	chr14	70634343	70634343	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcggtgtttgtctgtgCggtactttttgtgcatgtat	11	7	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70634343	T	T	70634343	3	4	60	1	0	0	0	0	1	0	0	0	14822	768	27	4	2125	4	SLC8A3	14	70634343	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	21755	70634343	36715197	1037	67892											
SLC8A3	6547	broad.mit.edu	37	chr14	70634379	70634379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtatttgtagaagagcagtCgtttatctgccacccaggcc	10	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70634379	A	A	70634379	3	1	60	1	0	0	0	0	1	0	0	0	14822	884	31	3	2161	3	SLC8A3	14	70634379	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	36	70634379	36715161	1038	67893											
DPF3	8110	broad.mit.edu	37	chr14	73109547	73109547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctagaagtaagccaaaCtgatatgagcagaggaagaa	10	7	0	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73109547	A	A	73109547	1	1	60	0	1	0	0	0	0	0	0	0	4758	580	20	3		3	DPF3	14	73109547	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2475168	73109547	34239993	1039	67894											
MLH3	27030	broad.mit.edu	37	chr14	75515020	75515020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttgctatggcctggacCacctgattcataaatgtaca	7	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75515020	A	A	75515020	3	1	60	1	0	0	0	0	1	0	0	0	9711	594	21	2	3070	2	MLH3	14	75515020	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2405473	75515020	31834520	1040	67895											
ADCK1	57143	broad.mit.edu	37	chr14	78391961	78391961	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttgaacttgaagcttcaggGatggcagagctctgggggag	16	6	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78391961	C	C	78391961	1	2	60	0	1	0	0	0	0	0	0	0	288	1189	41	4		4	ADCK1	14	78391961	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2876941	78391961	28957579	1041	67896											
DIO2	1734	broad.mit.edu	37	chr14	80677416	80677416	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattatggcttaatagctgtCaccctcccaagctaacctgt	6	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80677416	A	A	80677416	1	1	60	0	1	0	0	0	0	0	0	0	4565	841	29	3		3	DIO2	14	80677416	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2285455	80677416	26672124	1042	67897											
STON2	85439	broad.mit.edu	37	chr14	81743441	81743441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgcggaagtttttcacCcactcactgggcacagggta	10	13	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81743441	A	A	81743441	3	1	60	1	0	0	0	0	1	0	0	0	15436	624	22	2	509	2	STON2	14	81743441	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1066025	81743441	25606099	1043	67898											
STON2	85439	broad.mit.edu	37	chr14	81837478	81837478	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagtcagagggcatctcCccagggagtcaaaggaaggg	15	9	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81837478	A	A	81837478	3	1	60	1	0	0	0	0	1	0	0	0	15436	623	22	2	2302	2	STON2	14	81837478	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	94037	81837478	25512062	1044	67899											
FBLN5	10516	broad.mit.edu	37	chr14	92336728	92336728	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcactgatggggcccgttTgctatggacagaaccgggga	16	9	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92336728	A	A	92336728	3	1	60	1	0	0	0	0	1	0	0	0	5757	1826	63	5	163	5	FBLN5	14	92336728	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	10499250	92336728	15012812	1045	67900											
KIAA1409	57578	broad.mit.edu	37	chr14	94066903	94066903	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttttctttttttttttcctCctctttcccagggtctatgt	4	11	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94066903	A	A	94066903	1	1	60	0	1	0	0	0	0	0	0	0	8300	870	30	3		3	KIAA1409	14	94066903	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1730175	94066903	13282637	1046	67901											
FAM181A	90050	broad.mit.edu	37	chr14	94394779	94394779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagctcaagcgcttctccCagaagtattcccggctcccg	9	16	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94394779	A	A	94394779	3	1	60	1	0	0	0	0	1	0	0	0	5554	595	21	2	340	2	FAM181A	14	94394779	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	327876	94394779	12954761	1047	67902											
C14orf49	161176	broad.mit.edu	37	chr14	95921873	95921873	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctcccctggaccggagCaggccccgcagccgctcctc	12	20	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95921873	A	A	95921873	2	1	60	1	0	0	0	0	0	0	0	1	1789	697	25	3		3	C14orf49	14	95921873	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1527094	95921873	11427667	1048	67903											
CDC42BPB	9578	broad.mit.edu	37	chr14	103405935	103405935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcccgccctatcccggCcgtgcacgcaccagaggcag	11	20	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103405935	A	A	103405935	1	1	60	0	1	0	0	0	0	0	0	0	3103	754	26	3		3	CDC42BPB	14	103405935	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	7484062	103405935	3943605	1049	67904											
OR4N4	283694	broad.mit.edu	37	chr15	22332441	22332441	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagattctaacgtgacagaActtgttcttctgggcctatc	8	10	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22332441	T	T	22332441	1	4	60	0	1	0	0	0	0	0	0	0	11172	58	2	5		5	OR4N4	15	22332441	5'UTR	SNP	A	TCGA-17-Z030-01A-01W-0746-08		22332441	80198951	1050	67905											
OR4M2	390538	broad.mit.edu	37	chr15	22369514	22369514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattttgtgtaaagagaaGtgaaagataaattatacatt	7	1	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22369514	T	T	22369514	3	4	60	1	0	0	0	0	1	0	0	0	11170	1020	36	3	941	3	OR4M2	15	22369514	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	37073	22369514	80161878	1051	67906											
OR4N4	283694	broad.mit.edu	37	chr15	22382673	22382673	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttctgggcaacttggcCttcctggatgcatcctactc	8	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22382673	A	A	22382673	2	1	60	1	0	0	0	0	0	0	0	1	11172	668	24	2		2	OR4N4	15	22382673	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	13159	22382673	80148719	1052	67907											
NDN	4692	broad.mit.edu	37	chr15	23931341	23931341	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatactataatgacccaccCccacccttccacagccctgg	5	18	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23931341	A	A	23931341	1	1	60	0	1	0	0	0	0	0	0	0	10342	638	22	2		2	NDN	15	23931341	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1548668	23931341	78600051	1053	67908											
C15orf2	23742	broad.mit.edu	37	chr15	24921530	24921530	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgcagatcgaaggggaGgatgacgagaaaaggacccc	16	9	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921530	A	A	24921530	2	1	60	1	0	0	0	0	0	0	0	1	1797	991	35	4		4	C15orf2	15	24921530	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	990189	24921530	77609862	1054	67909											
SNRPN	6638	broad.mit.edu	37	chr15	25222149	25222149	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggattggcaggccctgtCcgaggagttgggggaccatc	17	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25222149	A	A	25222149	2	1	60	1	0	0	0	0	0	0	0	1	14984	842	30	3		3	SNRPN	15	25222149	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	300619	25222149	77309243	1055	67910											
GABRB3	2562	broad.mit.edu	37	chr15	26825499	26825499	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacattcctcgagaccagacGgtgctccacgatggagaact	10	12	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26825499	C	C	26825499	3	2	60	1	0	0	0	0	1	0	0	0	6228	1116	39	4	788	4	GABRB3	15	26825499	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1603350	26825499	75705893	1056	67911											
GABRB3	2562	broad.mit.edu	37	chr15	26961777	26961777	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacatctccttagaggcctCttgtgggttctcactgccaa	8	12	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26961777	T	T	26961777	1	4	60	0	1	0	0	0	0	0	0	0	6228	928	32	4		4	GABRB3	15	26961777	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	136278	26961777	75569615	1057	67912											
GABRG3	2567	broad.mit.edu	37	chr15	27572006	27572006	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctggacagatagtcgcctTcgattcaacagcacaatgaa	8	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27572006	A	A	27572006	2	1	60	1	0	0	0	0	0	0	0	1	6233	1770	62	5		5	GABRG3	15	27572006	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	610229	27572006	74959386	1058	67913											
GABRG3	2567	broad.mit.edu	37	chr15	27777956	27777956	+	Frame_Shift_Del	DEL	T	-	-													tcttggagctggactcgtacTcccgggtctttttccccacg							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27777956	-	-	27777956	7	5	60	1	0	1	0	1	0	0	0	0	6233	1551	54	0	1371	0	GABRG3	15	27777956	Frame_Shift_Del	DEL	T	TCGA-17-Z030-01A-01W-0746-08	205950	27777956	74753436	1059	67914											
HERC2	8924	broad.mit.edu	37	chr15	28459691	28459691	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacccacctctgagtgacgGcactgcgccgctcttcacca	8	19	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28459691	A	A	28459691	1	1	60	0	1	0	0	0	0	0	0	0	7125	1218	42	4		4	HERC2	15	28459691	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	681735	28459691	74071701	1060	67915											
HERC2	8924	broad.mit.edu	37	chr15	28501352	28501352	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacggtgctcagcacgcCcgcactgctggccagggtca	13	16	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28501352	T	T	28501352	3	4	60	1	0	0	0	0	1	0	0	0	7125	623	22	4	12179	4	HERC2	15	28501352	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	41661	28501352	74030040	1061	67916											
TJP1	7082	broad.mit.edu	37	chr15	30020222	30020222	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagcgtctcgtggttcactCtctattcattatgtcaggac	8	12	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30020222	T	T	30020222	2	4	60	1	0	0	0	0	0	0	0	1	16052	927	32	4		4	TJP1	15	30020222	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1518870	30020222	72511170	1062	67917											
MTMR15	22909	broad.mit.edu	37	chr15	31197225	31197225	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgattcagcaaaaagggAagtaaagcagaagatcagtc	11	5	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31197225	G	G	31197225	3	3	60	1	0	0	0	0	1	0	0	0	10037	246	9	5	361	5	MTMR15	15	31197225	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1177003	31197225	71334167	1063	67918											
OTUD7A	161725	broad.mit.edu	37	chr15	32058090	32058090	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatattccttctgaaactaTtttagtttttttcttttctc	4	7	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32058090	C	C	32058090	1	2	60	0	1	0	0	0	0	0	0	0	11412	1508	52	5		5	OTUD7A	15	32058090	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	860865	32058090	70473302	1064	67919											
FMN1	342184	broad.mit.edu	37	chr15	33359067	33359067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagagctgctccaggagaGtgggagtggccttcggatca	17	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33359067	T	T	33359067	3	4	60	1	0	0	0	0	1	0	0	0	6007	1029	36	3	2639	3	FMN1	15	33359067	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1300977	33359067	69172325	1065	67920											
RYR3	6263	broad.mit.edu	37	chr15	33840249	33840249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaagctcagtacctgaaCagcctctgcagggagctgtt	11	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33840249	A	A	33840249	1	1	60	0	1	0	0	0	0	0	0	0	13881	493	17	3		3	RYR3	15	33840249	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	481182	33840249	68691143	1066	67921											
RYR3	6263	broad.mit.edu	37	chr15	33936549	33936549	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtctgggtctatctcagatCggccgcatgaatctcgggac	12	11	4	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33936549	T	T	33936549	2	4	60	1	0	0	0	0	0	0	0	1	13881	874	31	4		4	RYR3	15	33936549	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	96300	33936549	68594843	1067	67922											
C15orf29	79768	broad.mit.edu	37	chr15	34439591	34439591	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttttaccaattggtgaGcacaggaaggcaatctacca	9	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34439591	T	T	34439591	3	4	60	1	0	0	0	0	1	0	0	0	1802	971	34	3	336	3	C15orf29	15	34439591	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	503042	34439591	68091801	1068	67923											
C15orf55	256646	broad.mit.edu	37	chr15	34647928	34647928	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcaggagcaagccctagaTagccccagagggatgcacag	15	11	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34647928	C	C	34647928	2	2	60	1	0	0	0	0	0	0	0	1	1816	1403	49	5		5	C15orf55	15	34647928	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	208337	34647928	67883464	1069	67924											
ACTC1	70	broad.mit.edu	37	chr15	35084575	35084575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagaggaggaaagcagaCccacactgtggcagatgaga	15	7	0	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35084575	A	A	35084575	1	1	60	0	1	0	0	0	0	0	0	0	195	522	18	3		3	ACTC1	15	35084575	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	436647	35084575	67446817	1070	67925											
TMCO5A	145942	broad.mit.edu	37	chr15	38229763	38229763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggccaaggttcatgacCtaaatgttagggattttctc	10	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38229763	A	A	38229763	1	1	60	0	1	0	0	0	0	0	0	0	16122	696	24	2		2	TMCO5A	15	38229763	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3145188	38229763	64301629	1071	67926											
EIF2AK4	440275	broad.mit.edu	37	chr15	40289271	40289271	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccaactcagagatgtatGtatcaggtgttttagtgcct	9	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40289271	A	A	40289271	1	1	60	0	1	0	0	0	0	0	0	0	5039	1392	48	4		4	EIF2AK4	15	40289271	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2059508	40289271	62242121	1072	67927											
PLCB2	5330	broad.mit.edu	37	chr15	40590490	40590490	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctcctcgtcagggggtttCcccttccagcagtctagctc	11	15	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40590490	A	A	40590490	2	1	60	1	0	0	0	0	0	0	0	1	12123	842	30	3		3	PLCB2	15	40590490	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	301219	40590490	61940902	1073	67928											
TP53BP1	7158	broad.mit.edu	37	chr15	43712550	43712550	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccgtcacttcagtgtccAgcgggatggggtcacataac	14	11	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43712550	T	T	43712550	3	4	60	1	0	0	0	0	1	0	0	0	16507	188	7	5	1331	5	TP53BP1	15	43712550	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3122060	43712550	58818842	1074	67929											
MAP1A	4130	broad.mit.edu	37	chr15	43814040	43814040	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagcagttacagcgactgGgtgaagaaccttatctctcc	9	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43814040	A	A	43814040	4	1	60	1	0	0	0	0	0	1	0	0	9319	1241	43	4	371	4	MAP1A	15	43814040	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	101490	43814040	58717352	1075	67930											
SPG11	80208	broad.mit.edu	37	chr15	44903124	44903124	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catactgcttacactggcctGattggtgggaatcaaaatct	9	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44903124	A	A	44903124	4	1	60	1	0	0	0	0	0	1	0	0	15159	1299	45	4	4218	4	SPG11	15	44903124	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1089084	44903124	57628268	1076	67931											
C15orf43	145645	broad.mit.edu	37	chr15	45266120	45266120	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagcagatgtacttccctCtacagaattacccagttaac	5	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45266120	A	A	45266120	3	1	60	1	0	0	0	0	1	0	0	0	1810	912	32	3	512	3	C15orf43	15	45266120	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	362996	45266120	57265272	1077	67932											
SORD	6652	broad.mit.edu	37	chr15	45345434	45345434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaccagcaaaaaggaaataCatccaacacatcctatcaga	4	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45345434	T	T	45345434	1	4	60	0	1	0	0	0	0	0	0	0	15047	493	17	4		4	SORD	15	45345434	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	79314	45345434	57185958	1078	67933											
SEMA6D	80031	broad.mit.edu	37	chr15	47656821	47656821	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagttccctaaaatacatcGcttaacactgtgagtagagg	8	10	0	2	rs149720539	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47656821	C	C	47656821	1	2	60	0	1	0	0	0	0	0	0	0	14155	1102	38	4		4	SEMA6D	15	47656821	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2311387	47656821	54874571	1079	67934											
SEMA6D	80031	broad.mit.edu	37	chr15	48056265	48056265	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaccacgcagctcaatagGtgagagcagaaccccggcac	10	13	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48056265	T	T	48056265	5	4	60	1	0	0	0	0	0	0	1	0	14155	1275	44	3	1000	3	SEMA6D	15	48056265	Splice_Site	SNP	G	TCGA-17-Z030-01A-01W-0746-08	399444	48056265	54475127	1080	67935											
SEMA6D	80031	broad.mit.edu	37	chr15	48056590	48056590	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagggagcagcttggccaaCctcccacaccaggaaggggt	13	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48056590	G	G	48056590	1	3	60	0	1	0	0	0	0	0	0	0	14155	522	18	4		4	SEMA6D	15	48056590	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	325	48056590	54474802	1081	67936											
SECISBP2L	9728	broad.mit.edu	37	chr15	49304083	49304083	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtcattacactagtctTtaattacagattactcttca	3	8	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49304083	A	A	49304083	1	1	60	0	1	0	0	0	0	0	0	0	14120	1856	64	5		5	SECISBP2L	15	49304083	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1247493	49304083	53227309	1082	67937											
MYO5A	4644	broad.mit.edu	37	chr15	52645751	52645751	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagagaggctctgaatgggCctcttgccaaaacaaaatat	9	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52645751	T	T	52645751	1	4	60	0	1	0	0	0	0	0	0	0	10172	754	26	4		4	MYO5A	15	52645751	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3341668	52645751	49885641	1083	67938											
MYO5A	4644	broad.mit.edu	37	chr15	52656830	52656830	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattcagaaggttctgatatCtcagcctttcatcattaagg	7	9	5	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52656830	T	T	52656830	3	4	60	1	0	0	0	0	1	0	0	0	10172	913	32	4	2409	4	MYO5A	15	52656830	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	11079	52656830	49874562	1084	67939											
UNC13C	440279	broad.mit.edu	37	chr15	54589933	54589933	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttttttgtttttttgtttTttagcttttgagaggtcgta	9	2	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54589933	A	A	54589933	1	1	60	0	1	0	0	0	0	0	0	0	17112	1856	64	5		5	UNC13C	15	54589933	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1933103	54589933	47941459	1085	67940											
CGNL1	84952	broad.mit.edu	37	chr15	57731136	57731136	+	Frame_Shift_Del	DEL	A	-	-													aactctttgtacaggtttttActggatgatcaggaatgtgc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57731136	-	-	57731136	7	5	60	1	0	1	0	1	0	0	0	0	3334	388	14	0	941	0	CGNL1	15	57731136	Frame_Shift_Del	DEL	A	TCGA-17-Z030-01A-01W-0746-08	3141203	57731136	44800256	1086	67941											
RORA	6095	broad.mit.edu	37	chr15	60803809	60803809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttttttgacattcggcCaaattttacagctggaagaa	8	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60803809	A	A	60803809	3	1	60	1	0	0	0	0	1	0	0	0	13639	594	21	2	1163	2	RORA	15	60803809	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3072673	60803809	41727583	1087	67942											
TLN2	83660	broad.mit.edu	37	chr15	63089468	63089468	+	Frame_Shift_Del	DEL	T	-	-													ggtagaagacacgaaactacTtgtgtcaggagctgcgtcca							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63089468	-	-	63089468	7	5	60	1	0	1	0	1	0	0	0	0	16071	1609	56	0	6279	0	TLN2	15	63089468	Frame_Shift_Del	DEL	T	TCGA-17-Z030-01A-01W-0746-08	2285659	63089468	39441924	1088	67943											
PIF1	80119	broad.mit.edu	37	chr15	65114326	65114326	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagcgatcctcccaccttGgcctcctaaagttttgggat	8	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65114326	A	A	65114326	1	1	60	0	1	0	0	0	0	0	0	0	11978	1363	47	4		4	PIF1	15	65114326	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2024858	65114326	37417066	1089	67944											
CLPX	10845	broad.mit.edu	37	chr15	65450169	65450169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcgcctacatatccagcCtgagtcaaagttgtacagtc	7	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65450169	A	A	65450169	3	1	60	1	0	0	0	0	1	0	0	0	3588	680	24	2	957	2	CLPX	15	65450169	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	335843	65450169	37081223	1090	67945											
IGDCC3	9543	broad.mit.edu	37	chr15	65622070	65622070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggacccacctgcccCtttggccgaacaggaggaag	13	15	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65622070	A	A	65622070	3	1	60	1	0	0	0	0	1	0	0	0	7638	681	24	2	465	2	IGDCC3	15	65622070	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	171901	65622070	36909322	1091	67946											
RPL4	6124	broad.mit.edu	37	chr15	66792023	66792023	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcagaaaacagtaagaatCaaatccctgtaagaacttaa	7	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66792023	T	T	66792023	1	4	60	0	1	0	0	0	0	0	0	0	13706	841	29	4		4	RPL4	15	66792023	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1169953	66792023	35739369	1092	67947											
LCTL	197021	broad.mit.edu	37	chr15	66850083	66850083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtccttcatgacttggGggtagtcaccggcataaatg	12	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66850083	T	T	66850083	3	4	60	1	0	0	0	0	1	0	0	0	8766	1232	43	2	828	2	LCTL	15	66850083	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	58060	66850083	35681309	1093	67948											
SMAD3	4088	broad.mit.edu	37	chr15	67402544	67402544	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatactggctgtacccttggAgttctgtgctgcttggggga	15	8	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67402544	T	T	67402544	1	4	60	0	1	0	0	0	0	0	0	0	14873	319	11	5		5	SMAD3	15	67402544	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	552461	67402544	35128848	1094	67949											
CLN6	54982	broad.mit.edu	37	chr15	68547061	68547061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatccacgaggttttctgctAaacctgctcctccaaagcca	7	14	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68547061	T	T	68547061	1	4	60	0	1	0	0	0	0	0	0	0	3577	377	13	5		5	CLN6	15	68547061	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1144517	68547061	33984331	1095	67950											
ITGA11	22801	broad.mit.edu	37	chr15	68607988	68607988	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcaggcacggccctgaCctgcctgcagcgagctcgat	14	14	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68607988	A	A	68607988	5	1	60	1	0	0	0	0	0	0	1	0	7944	521	18	3	809	3	ITGA11	15	68607988	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	60927	68607988	33923404	1096	67951											
ITGA11	22801	broad.mit.edu	37	chr15	68609579	68609579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcccaccctgaccctcCcccacattgtccccagtctc	5	22	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68609579	A	A	68609579	1	1	60	0	1	0	0	0	0	0	0	0	7944	638	22	2		2	ITGA11	15	68609579	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1591	68609579	33921813	1097	67952											
CORO2B	10391	broad.mit.edu	37	chr15	69018088	69018088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggggaatgtgagggcaCgggcggcaggcagctggaga	21	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69018088	A	A	69018088	1	1	60	0	1	0	0	0	0	0	0	0	3789	551	19	3		3	CORO2B	15	69018088	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	408509	69018088	33513304	1098	67953											
SPESP1	246777	broad.mit.edu	37	chr15	69238076	69238076	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacatgtttattctatagCatcaaagggatcaaaattta	5	5	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69238076	G	G	69238076	3	3	60	1	0	0	0	0	1	0	0	0	15158	710	25	4	209	4	SPESP1	15	69238076	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	219988	69238076	33293316	1099	67954											
UACA	55075	broad.mit.edu	37	chr15	70980140	70980140	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacaaagcagctgtatgctAgaaggacaatctgccattgc	9	10	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70980140	G	G	70980140	2	3	60	1	0	0	0	0	0	0	0	1	16950	407	15	5		5	UACA	15	70980140	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1742064	70980140	31551252	1100	67955											
UACA	55075	broad.mit.edu	37	chr15	70991968	70991968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctgctgctttcatcaatCggtcatcatatttattccaa	4	10	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70991968	A	A	70991968	3	1	60	1	0	0	0	0	1	0	0	0	16950	884	31	3	4212	3	UACA	15	70991968	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	11828	70991968	31539424	1101	67956											
MYO9A	4649	broad.mit.edu	37	chr15	72195609	72195609	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggttctacatatcatgacaTcaaaagggaatgagagaaaa	10	5	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72195609	A	A	72195609	1	1	60	0	1	0	0	0	0	0	0	0	10178	1450	50	5		5	MYO9A	15	72195609	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1203641	72195609	30335783	1102	67957											
C15orf59	388135	broad.mit.edu	37	chr15	74032479	74032479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggcctctgtatgggcagGctcagggggcaagcccactt	15	11	2	0	rs150411210	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74032479	T	T	74032479	3	4	60	1	0	0	0	0	1	0	0	0	1820	1203	42	3	224	3	C15orf59	15	74032479	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1836870	74032479	28498913	1103	67958											
SGK269	79834	broad.mit.edu	37	chr15	77407367	77407380	+	Frame_Shift_Del	DEL	GGCTCCTCTGCTTC	-	-													cctggtgatgaccacaacgtGgctcctctgcttcttgctca							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77407380	-	-	77407367	7	5	60	1	0	1	0	1	0	0	0	0	14324	1348	47	0	872	0	SGK269	15	77407367	Frame_Shift_Del	DEL	GGCTCCTCTGCTTC	TCGA-17-Z030-01A-01W-0746-08	3374888	77407367	25124025	1104	67959											
KIAA1199	57214	broad.mit.edu	37	chr15	81229225	81229225	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggctcatcaacttcaacAagtgagtgggtgtccagcca	10	11	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81229225	T	T	81229225	4	4	60	1	0	0	0	0	0	1	0	0	8283	144	5	5	3306	5	KIAA1199	15	81229225	Nonsense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3821858	81229225	21302167	1105	67960											
TMC3	342125	broad.mit.edu	37	chr15	81660485	81660485	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggtttcaccgtgttagccAggatggtcttgatcttctga	13	8	4	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81660485	T	T	81660485	1	4	60	0	1	0	0	0	0	0	0	0	16109	203	7	5		5	TMC3	15	81660485	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	431260	81660485	20870907	1106	67961											
CPEB1	64506	broad.mit.edu	37	chr15	83218104	83218104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtatatgctgatctgCagacctgggtcaggcctctc	12	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83218104	A	A	83218104	1	1	60	0	1	0	0	0	0	0	0	0	3832	725	25	3		3	CPEB1	15	83218104	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1557619	83218104	19313288	1107	67962											
CPEB1	64506	broad.mit.edu	37	chr15	83221258	83221258	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgcatccttcggctggacAtcttgaaataatattcactc	7	11	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83221258	T	T	83221258	3	4	60	1	0	0	0	0	1	0	0	0	3832	217	8	5	533	5	CPEB1	15	83221258	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3154	83221258	19310134	1108	67963											
CPEB1	64506	broad.mit.edu	37	chr15	83239916	83239916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgcctttacgtggagcCatctgtcctgccacactcac	8	16	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83239916	A	A	83239916	1	1	60	0	1	0	0	0	0	0	0	0	3832	609	21	2		2	CPEB1	15	83239916	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	18658	83239916	19291476	1109	67964											
BNC1	646	broad.mit.edu	37	chr15	83937069	83937069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacaaaacatattcctcCattcggcagcacttattgag	5	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83937069	A	A	83937069	1	1	60	0	1	0	0	0	0	0	0	0	1480	609	21	2		2	BNC1	15	83937069	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	697153	83937069	18594323	1110	67965											
AKAP13	11214	broad.mit.edu	37	chr15	86077002	86077002	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgttttcttgaccagtcaggAcccccatctggggatgtgaa	11	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86077002	T	T	86077002	2	4	60	1	0	0	0	0	0	0	0	1	449	262	10	5		5	AKAP13	15	86077002	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2139933	86077002	16454390	1111	67966											
AGBL1	123624	broad.mit.edu	37	chr15	86697909	86697909	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagagatacacatggtggtCccagccagataaataaaaga	10	7	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86697909	A	A	86697909	1	1	60	0	1	0	0	0	0	0	0	0	375	870	30	3		3	AGBL1	15	86697909	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	620907	86697909	15833483	1112	67967											
NTRK3	4916	broad.mit.edu	37	chr15	88670299	88670299	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttcaaagtttcaAgtaagataatatttggaaaa	5	2	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88670299	G	G	88670299	1	3	60	0	1	0	0	0	0	0	0	0	10803	87	3	5		5	NTRK3	15	88670299	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1972390	88670299	13861093	1113	67968											
IQGAP1	8826	broad.mit.edu	37	chr15	91016347	91016347	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgtgttttttgagtgctgGactcttagtcttctctttcc	9	8	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91016347	T	T	91016347	1	4	60	0	1	0	0	0	0	0	0	0	7884	1189	41	3		3	IQGAP1	15	91016347	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2346048	91016347	11515045	1114	67969											
ST8SIA2	8128	broad.mit.edu	37	chr15	92977389	92977389	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttctggagaagtttacattCaagcccgtgcaaaaacaaaa	7	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92977389	G	G	92977389	1	3	60	0	1	0	0	0	0	0	0	0	15350	841	29	4		4	ST8SIA2	15	92977389	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1961042	92977389	9554003	1115	67970											
ARRDC4	91947	broad.mit.edu	37	chr15	98509343	98509343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttcctttcaacagtgGgatctatatttagccagttt	6	11	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98509343	T	T	98509343	1	4	60	0	1	0	0	0	0	0	0	0	989	1247	43	2		2	ARRDC4	15	98509343	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5531954	98509343	4022049	1116	67971											
ASB7	140460	broad.mit.edu	37	chr15	101152371	101152371	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaccttctcttcttaaagGctgatccccgtaacctaatg	5	13	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101152371	T	T	101152371	1	4	60	0	1	0	0	0	0	0	0	0	1032	1217	42	3		3	ASB7	15	101152371	5'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2643028	101152371	1379021	1117	67972											
PRSS21	10942	broad.mit.edu	37	chr16	2871299	2871299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagccccatagcccttcCcactctcagcccctcccctg	4	24	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2871299	A	A	2871299	1	1	60	0	1	0	0	0	0	0	0	0	12724	638	22	2		2	PRSS21	16	2871299	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08		2871299	87483454	1118	67973											
DNAJA3	9093	broad.mit.edu	37	chr16	4496797	4496797	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggggtgtgtagtttgtcAggtctgagcttgggcctggc	18	6	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4496797	G	G	4496797	1	3	60	0	1	0	0	0	0	0	0	0	4653	203	7	5		5	DNAJA3	16	4496797	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1625498	4496797	85857956	1119	67974											
GLYR1	84656	broad.mit.edu	37	chr16	4873809	4873809	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagcttgtcctgcctgcagGagagctccttacctcgcttg	10	14	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4873809	A	A	4873809	1	1	60	0	1	0	0	0	0	0	0	0	6547	1189	41	4		4	GLYR1	16	4873809	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	377012	4873809	85480944	1120	67975											
USP7	7874	broad.mit.edu	37	chr16	8993066	8993066	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaagacacagaaaggaaggTtcacattttggggaaaaatt	10	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8993066	A	A	8993066	1	1	60	0	1	0	0	0	0	0	0	0	17215	1740	60	5		5	USP7	16	8993066	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4119257	8993066	81361687	1121	67976											
GRIN2A	2903	broad.mit.edu	37	chr16	9923616	9923616	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgaaggttgccagaagatGgaattatatcatagttgtgt	11	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9923616	T	T	9923616	1	4	60	0	1	0	0	0	0	0	0	0	6845	1363	47	2		2	GRIN2A	16	9923616	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	930550	9923616	80431137	1122	67977											
NOMO1	23420	broad.mit.edu	37	chr16	14970272	14970272	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaggcctgtttttagaaGgccagatccaccccgagttg	12	11	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14970272	A	A	14970272	3	1	60	1	0	0	0	0	1	0	0	0	10626	1000	35	4	2495	4	NOMO1	16	14970272	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5046656	14970272	75384481	1123	67978											
TMC5	79838	broad.mit.edu	37	chr16	19467959	19467960	+	Intron	DNP	GG	TT	TT													ctgcgagtcccaatcaatgcGggtgtgactgctgtatgaag							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	19467960	TT	TT	19467959	1	4	60	0	1	0	0	0	0	0	0	0	16111	1131	39	1		1	TMC5	16	19467959	Intron	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	4497687	19467959	70886794	1124	67979											
GPRC5B	51704	broad.mit.edu	37	chr16	19873044	19873044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcgtttgagctgtggcGgtccttgcaggccacatggg	16	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19873044	T	T	19873044	1	4	60	0	1	0	0	0	0	0	0	0	6791	1131	39	1		1	GPRC5B	16	19873044	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	405085	19873044	70481709	1125	67980											
GP2	2813	broad.mit.edu	37	chr16	20334344	20334344	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagatcaggatgcagtgcGggctggacttgaggccccca	15	10	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20334344	A	A	20334344	1	1	60	0	1	0	0	0	0	0	0	0	6647	1131	39	4		4	GP2	16	20334344	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	461300	20334344	70020409	1126	67981											
PDILT	204474	broad.mit.edu	37	chr16	20410574	20410574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggtgagctgtggacagCagagacacaagcggccacca	13	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20410574	A	A	20410574	3	1	60	1	0	0	0	0	1	0	0	0	11768	710	25	3	1749	3	PDILT	16	20410574	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	76230	20410574	69944179	1127	67982											
ACSM2A	123876	broad.mit.edu	37	chr16	20476975	20476975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcctgtggcctgcagcGtggggatcgtgtggcagtgg	21	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20476975	T	T	20476975	3	4	60	1	0	0	0	0	1	0	0	0	183	1145	40	3	320	3	ACSM2A	16	20476975	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	66401	20476975	69877778	1128	67983											
ACSM1	116285	broad.mit.edu	37	chr16	20648101	20648101	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacaggcctgacaggtttgAttctgatgccaatgtttcct	9	10	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20648101	T	T	20648101	3	4	60	1	0	0	0	0	1	0	0	0	182	333	12	5	494	5	ACSM1	16	20648101	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	171126	20648101	69706652	1129	67984											
THUMPD1	55623	broad.mit.edu	37	chr16	20750214	20750214	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatcttagcaagtatttgtCacacctatcccaagtgtcct	5	11	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20750214	T	T	20750214	1	4	60	0	1	0	0	0	0	0	0	0	16005	841	29	4		4	THUMPD1	16	20750214	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	102113	20750214	69604539	1130	67985											
DNAH3	55567	broad.mit.edu	37	chr16	21049055	21049055	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacattgagccttggtccTcggccaaggtcctgaaccgc	10	15	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21049055	C	C	21049055	1	2	60	0	1	0	0	0	0	0	0	0	4643	1566	54	5		5	DNAH3	16	21049055	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	298841	21049055	69305698	1131	67986											
DNAH3	55567	broad.mit.edu	37	chr16	21108872	21108872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggttgttctcctaagccCtcgaagacaccagggcaaat	10	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21108872	A	A	21108872	1	1	60	0	1	0	0	0	0	0	0	0	4643	696	24	2		2	DNAH3	16	21108872	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	59817	21108872	69245881	1132	67987											
HS3ST4	9951	broad.mit.edu	37	chr16	25741877	25741877	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcttccttatctccctctGttcctccctctctcccttct	1	20	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25741877	C	C	25741877	1	2	60	0	1	0	0	0	0	0	0	0	7434	1392	48	4		4	HS3ST4	16	25741877	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4633005	25741877	64612876	1133	67988											
HS3ST4	9951	broad.mit.edu	37	chr16	25741902	25741902	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccctctctcccttcttcctCccttctccttccttccttcc	0	23	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25741902	T	T	25741902	1	4	60	0	1	0	0	0	0	0	0	0	7434	870	30	4		4	HS3ST4	16	25741902	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	25	25741902	64612851	1134	67989											
GSG1L	146395	broad.mit.edu	37	chr16	27802672	27802672	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatggcctgaggtccgcgGgccaggttgaggtcttggtc	18	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27802672	T	T	27802672	1	4	60	0	1	0	0	0	0	0	0	0	6887	1247	43	2		2	GSG1L	16	27802672	3'UTR	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2060770	27802672	62552081	1135	67990											
APOB48R	55911	broad.mit.edu	37	chr16	28507877	28507877	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcagcagggatccagtGgctgagctgccctcagatgg	17	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28507877	T	T	28507877	2	4	60	1	0	0	0	0	0	0	0	1	788	1335	47	2		2	APOB48R	16	28507877	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	705205	28507877	61846876	1136	67991											
TBX6	6911	broad.mit.edu	37	chr16	30097621	30097621	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agagggaaggggcccccttgGagaaagtgcggggcaaaggg	20	7	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30097621	C	C	30097621	2	2	60	1	0	0	0	0	0	0	0	1	15784	1161	41	4		4	TBX6	16	30097621	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1589744	30097621	60257132	1137	67992											
ZNF48	197407	broad.mit.edu	37	chr16	30409122	30409122	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagattcctcggtcccGgatccctgctggtgagcgcc	11	16	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30409122	A	A	30409122	3	1	60	1	0	0	0	0	1	0	0	0	18061	1116	39	4	557	4	ZNF48	16	30409122	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	311501	30409122	59945631	1138	67993											
ITGAL	3683	broad.mit.edu	37	chr16	30492920	30492920	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgcgtgagttcccttttGcaggagagcacgtgtcctgt	13	10	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30492920	A	A	30492920	1	1	60	0	1	0	0	0	0	0	0	0	7956	1334	46	4		4	ITGAL	16	30492920	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	83798	30492920	59861833	1139	67994											
ITGAM	3684	broad.mit.edu	37	chr16	31284733	31284733	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcccgaaagaatgcctttaAgatcctagttgtcatcacgg	9	10	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31284733	T	T	31284733	3	4	60	1	0	0	0	0	1	0	0	0	7957	72	3	5	782	5	ITGAM	16	31284733	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	791813	31284733	59070020	1140	67995											
ITGAD	3681	broad.mit.edu	37	chr16	31425863	31425863	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgaaaccaagaaccccacTttgactcgaagaaaaaccct	5	12	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31425863	A	A	31425863	2	1	60	1	0	0	0	0	0	0	0	1	7954	1596	56	5		5	ITGAD	16	31425863	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	141130	31425863	58928890	1141	67996											
ZNF423	23090	broad.mit.edu	37	chr16	49798425	49798425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaaaggaccgtgaaagGtgcgtgcgggacccaacaca	13	10	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49798425	T	T	49798425	1	4	60	0	1	0	0	0	0	0	0	0	18025	1276	44	3		3	ZNF423	16	49798425	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	18372562	49798425	40556328	1142	67997											
IRX6	79190	broad.mit.edu	37	chr16	55363004	55363004	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcacccccagcccggcctAggccacgaagtcctgagtgc	12	17	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55363004	T	T	55363004	3	4	60	1	0	0	0	0	1	0	0	0	7918	411	15	5	1132	5	IRX6	16	55363004	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	5564579	55363004	34991749	1143	67998											
MMP2	4313	broad.mit.edu	37	chr16	55530351	55530354	+	Intron	DEL	ATAA	-	-													gggattaaattacaaggcacAtaaataaagcacatggcatt					rs140821606		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55530354	-	-	55530351	6	5	60	0	1	1	0	1	0	0	0	0	9751	232	8	0		0	MMP2	16	55530351	Intron	DEL	ATAA	TCGA-17-Z030-01A-01W-0746-08	167347	55530351	34824402	1144	67999											
MT1A	4489	broad.mit.edu	37	chr16	56670474	56670474	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttaaggttgggagggaactCaaggctggccctgagtgcac	16	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56670474	G	G	56670474	1	3	60	0	1	0	0	0	0	0	0	0	9991	841	29	4		4	MT1A	16	56670474	5'Flank	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1140123	56670474	33684279	1145	68000											
MT1H	4496	broad.mit.edu	37	chr16	56704488	56704488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcctgcaagaagagtgaGtgcggggccatctccaggaa	13	11	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56704488	T	T	56704488	1	4	60	0	1	0	0	0	0	0	0	0	9996	1044	36	3		3	MT1H	16	56704488	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	34014	56704488	33650265	1146	68001											
CDH8	1006	broad.mit.edu	37	chr16	61761177	61761177	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcattttaacgtgcaactCaactttctcttgaaagcatg	5	9	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61761177	G	G	61761177	1	3	60	0	1	0	0	0	0	0	0	0	3146	841	29	4		4	CDH8	16	61761177	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5056689	61761177	28593576	1147	68002											
CDH11	1009	broad.mit.edu	37	chr16	64986586	64986589	+	Intron	DEL	CACT	-	-													cacacacacatacacacacaCactcacactgaacttctggt					rs138499402		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64986589	-	-	64986586	6	5	60	0	1	1	0	1	0	0	0	0	3127	493	17	0		0	CDH11	16	64986586	Intron	DEL	CACT	TCGA-17-Z030-01A-01W-0746-08	3225409	64986586	25368167	1148	68003											
CDH11	1009	broad.mit.edu	37	chr16	65015829	65015829	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttaatcttgtttacattcTattgaacctgataaacttga	4	7	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65015829	C	C	65015829	1	2	60	0	1	0	0	0	0	0	0	0	3127	1537	53	5		5	CDH11	16	65015829	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	29243	65015829	25338924	1149	68004											
TK2	7084	broad.mit.edu	37	chr16	66551088	66551088	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctcttctttaacctctggTaacaagtctcaggattggtc	7	10	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66551088	A	A	66551088	3	1	60	1	0	0	0	0	1	0	0	0	16056	1638	57	5	240	5	TK2	16	66551088	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1535259	66551088	23803665	1150	68005											
HYDIN	54768	broad.mit.edu	37	chr16	70843786	70843786	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtgaacaggcttttccGgaagtgctggcgtggctttc	15	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70843786	A	A	70843786	3	1	60	1	0	0	0	0	1	0	0	0	7537	1116	39	4	590	4	HYDIN	16	70843786	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4292698	70843786	19510967	1151	68006											
HYDIN	54768	broad.mit.edu	37	chr16	71007893	71007893	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatggtcaccttggcttggaGacagatgtgaactgttggcc	13	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71007893	A	A	71007893	3	1	60	1	0	0	0	0	1	0	0	0	7537	942	33	4	10509	4	HYDIN	16	71007893	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	164107	71007893	19346860	1152	68007											
GLG1	2734	broad.mit.edu	37	chr16	74542838	74542838	+	Intron	DEL	A	-	-													caacaactagataggagaggAaaaaaaaaaacaaagaaaaa							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74542838	-	-	74542838	6	5	60	0	1	1	0	1	0	0	0	0	6500	261	9	0		0	GLG1	16	74542838	Intron	DEL	A	TCGA-17-Z030-01A-01W-0746-08	3534945	74542838	15811915	1153	68008											
SYCE1L	100130958	broad.mit.edu	37	chr16	77241310	77241311	+	Intron	DEL	AG	-	-													tgcgtacagagcactgaaacAggggctatgagaagttagag					rs10604226		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77241311	-	-	77241310	6	5	60	0	1	1	0	1	0	0	0	0	15547	203	7	0		0	SYCE1L	16	77241310	Intron	DEL	AG	TCGA-17-Z030-01A-01W-0746-08	2698472	77241310	13113443	1154	68009											
ADAMTS18	170692	broad.mit.edu	37	chr16	77355081	77355081	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactgctttagagcctagttCatgatcacatcccactagct	6	12	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77355081	T	T	77355081	3	4	60	1	0	0	0	0	1	0	0	0	263	835	29	4	1519	4	ADAMTS18	16	77355081	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	113771	77355081	12999672	1155	68010											
WWOX	51741	broad.mit.edu	37	chr16	78859647	78859647	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtggatggcctgatgatccCcagcggagaccatgttaact	12	10	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78859647	G	G	78859647	1	3	60	0	1	0	0	0	0	0	0	0	17541	638	22	4		4	WWOX	16	78859647	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1504566	78859647	11495106	1156	68011											
WWOX	51741	broad.mit.edu	37	chr16	78980676	78980676	+	Intron	DEL	G	-	-													agaattggcagtgagcccccGggggagctcagtgcaagaca							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78980676	-	-	78980676	6	5	60	0	1	1	0	1	0	0	0	0	17541	1131	39	0		0	WWOX	16	78980676	Intron	DEL	G	TCGA-17-Z030-01A-01W-0746-08	121029	78980676	11374077	1157	68012											
PKD1L2	114780	broad.mit.edu	37	chr16	81208495	81208495	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcctggaatgctacatcctCaacacatgtgtctccgagtg	9	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81208495	A	A	81208495	4	1	60	1	0	0	0	0	0	1	0	0	12060	835	29	3	4952	3	PKD1L2	16	81208495	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2227819	81208495	9146258	1158	68013											
CMIP	80790	broad.mit.edu	37	chr16	81735233	81735233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagctagggtggcaggccgGgtccgtaatgcacccctgcg	16	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81735233	T	T	81735233	1	4	60	0	1	0	0	0	0	0	0	0	3610	1247	43	2		2	CMIP	16	81735233	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	526738	81735233	8619520	1159	68014											
MTHFSD	64779	broad.mit.edu	37	chr16	86582041	86582041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagggtacagttctttccTaggtggggacattgcttctg	12	9	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86582041	C	C	86582041	1	2	60	0	1	0	0	0	0	0	0	0	10027	1537	53	5		5	MTHFSD	16	86582041	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4846808	86582041	3772712	1160	68015											
OR1E2	8388	broad.mit.edu	37	chr17	3336374	3336374	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagaacagtgacaccacagaGaggtgggagccacaagtaga	13	8	0	4	rs436972	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3336374	C	C	3336374	2	2	60	1	0	0	0	0	0	0	0	1	11049	929	33	4		4	OR1E2	17	3336374	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08		3336374	77858836	1161	68016											
SMTNL2	342527	broad.mit.edu	37	chr17	4500545	4500545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtacactccttcttccccGatgcctttgactacaactcc	5	16	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4500545	T	T	4500545	3	4	60	1	0	0	0	0	1	0	0	0	14930	1058	37	3	1212	3	SMTNL2	17	4500545	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1164171	4500545	76694665	1162	68017											
ZNF232	7775	broad.mit.edu	37	chr17	5012681	5012681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataacagaccaaatccccCttcccacctgcggctctggt	6	18	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5012681	A	A	5012681	1	1	60	0	1	0	0	0	0	0	0	0	17911	696	24	2		2	ZNF232	17	5012681	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	512136	5012681	76182529	1163	68018											
TNFSF12-TNFSF13	407977	broad.mit.edu	37	chr17	7454312	7454312	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgagaccccatccccCgacacagcactggcctcctg	10	18	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7454312	T	T	7454312	1	4	60	0	1	0	0	0	0	0	0	0	16427	667	23	4		4	TNFSF12-TNFSF13	17	7454312	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2441631	7454312	73740898	1164	68019											
TP53	7157	broad.mit.edu	37	chr17	7578463	7578463	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatggccatggcgcggacgCgggtgccgggcgggggtgtg	23	9	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7578463	G	G	7578463	3	3	60	1	0	0	0	0	1	0	0	0	16505	768	27	4	831	4	TP53	17	7578463	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	124151	7578463	73616747	1165	68020											
PIK3R6	146850	broad.mit.edu	37	chr17	8732134	8732134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcagggctgccgggtgCaggcagctcatcagcccccg	13	16	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8732134	A	A	8732134	3	1	60	1	0	0	0	0	1	0	0	0	12018	710	25	3	1240	3	PIK3R6	17	8732134	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1153671	8732134	72463076	1166	68021											
NTN1	9423	broad.mit.edu	37	chr17	9066031	9066031	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcctggctctgctagtggaGaagggaggagttgaggggtg	20	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9066031	A	A	9066031	1	1	60	0	1	0	0	0	0	0	0	0	10795	957	33	4		4	NTN1	17	9066031	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	333897	9066031	72129179	1167	68022											
GLP2R	9340	broad.mit.edu	37	chr17	9729482	9729482	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctgccccctgggggacCagtcctctctccttccacag	8	19	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9729482	A	A	9729482	2	1	60	1	0	0	0	0	0	0	0	1	6517	581	21	2		2	GLP2R	17	9729482	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	663451	9729482	71465728	1168	68023											
GAS7	8522	broad.mit.edu	37	chr17	9873133	9873133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccacagatgggcacccCcgcctttcgtccactgcagc	11	17	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9873133	A	A	9873133	1	1	60	0	1	0	0	0	0	0	0	0	6312	638	22	2		2	GAS7	17	9873133	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	143651	9873133	71322077	1169	68024											
GAS7	8522	broad.mit.edu	37	chr17	9923276	9923276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaagagtttttaaaccaGgaaggcaaaggctgatgaat	11	5	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9923276	T	T	9923276	1	4	60	0	1	0	0	0	0	0	0	0	6312	1015	35	2		2	GAS7	17	9923276	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	50143	9923276	71271934	1170	68025											
MYH13	8735	broad.mit.edu	37	chr17	10206550	10206550	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtaagacttcactttgGcctgcagcttgtccaccagg	9	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10206550	C	C	10206550	3	2	60	1	0	0	0	0	1	0	0	0	10126	1203	42	4	198	4	MYH13	17	10206550	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	283274	10206550	70988660	1171	68026											
MYH8	4626	broad.mit.edu	37	chr17	10305168	10305168	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacttggtgttttttttgCgcaaaaataatagtgtttta	8	3	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10305168	T	T	10305168	1	4	60	0	1	0	0	0	0	0	0	0	10135	783	27	4		4	MYH8	17	10305168	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	98618	10305168	70890042	1172	68027											
MYH2	4620	broad.mit.edu	37	chr17	10426759	10426759	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtaggctcttaagaactttGatccaataaggcactgaaag	9	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10426759	T	T	10426759	1	4	60	0	1	0	0	0	0	0	0	0	10129	1305	45	3		3	MYH2	17	10426759	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	121591	10426759	70768451	1173	68028											
LGALS9C	654346	broad.mit.edu	37	chr17	18380276	18380276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctggggctctgaggaaGcaactcctgggtggcaggag	17	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18380276	T	T	18380276	1	4	60	0	1	0	0	0	0	0	0	0	8822	986	34	3		3	LGALS9C	17	18380276	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7953517	18380276	62814934	1174	68029											
EPN2	22905	broad.mit.edu	37	chr17	19216680	19216680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtctctcacccacttgGgtctggtcgattgtggtggg	14	10	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19216680	T	T	19216680	1	4	60	0	1	0	0	0	0	0	0	0	5228	1247	43	2		2	EPN2	17	19216680	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	836404	19216680	61978530	1175	68030											
ULK2	9706	broad.mit.edu	37	chr17	19705048	19705048	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtcagatttattacagTgaaaaaaaggttgaaaacaa	7	4	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19705048	A	A	19705048	1	1	60	0	1	0	0	0	0	0	0	0	17102	1711	59	5		5	ULK2	17	19705048	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	488368	19705048	61490162	1176	68031											
ACCN1	40	broad.mit.edu	37	chr17	31914064	31914064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaagttcacaaactatggCtcatgaaccaaatccagcct	5	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31914064	A	A	31914064	1	1	60	0	1	0	0	0	0	0	0	0	128	812	28	3		3	ACCN1	17	31914064	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	12209016	31914064	49281146	1177	68032											
ACCN1	40	broad.mit.edu	37	chr17	32365851	32365851	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggcctgacccatggcagGaggtttccgctttgctaaca	13	11	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32365851	T	T	32365851	1	4	60	0	1	0	0	0	0	0	0	0	128	1189	41	3		3	ACCN1	17	32365851	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	451787	32365851	48829359	1178	68033											
TMEM132E	124842	broad.mit.edu	37	chr17	32953939	32953939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggaggaccctgcaggaGcacaggctggacagcaacct	13	14	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32953939	T	T	32953939	3	4	60	1	0	0	0	0	1	0	0	0	16171	962	34	3	601	3	TMEM132E	17	32953939	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	588088	32953939	48241271	1179	68034											
TMEM132E	124842	broad.mit.edu	37	chr17	32959944	32959944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaggtacagcccctctccCatggcggatacttgggaaac	12	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32959944	A	A	32959944	1	1	60	0	1	0	0	0	0	0	0	0	16171	609	21	2		2	TMEM132E	17	32959944	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6005	32959944	48235266	1180	68035											
ACACA	31	broad.mit.edu	37	chr17	35598837	35598837	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaagacatgagtatggacAggtctgggaatctggagtta	15	4	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35598837	T	T	35598837	1	4	60	0	1	0	0	0	0	0	0	0	106	203	7	5		5	ACACA	17	35598837	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	2638893	35598837	45596373	1181	68036											
KRT24	192666	broad.mit.edu	37	chr17	38859498	38859498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctaggtaattggccaagcGgtcattgaggttctgcatgg	14	7	3	1	rs146935622	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38859498	T	T	38859498	3	4	60	1	0	0	0	0	1	0	0	0	8532	1116	39	1	1161	1	KRT24	17	38859498	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3260661	38859498	42335712	1182	68037											
KRT26	353288	broad.mit.edu	37	chr17	38925932	38925932	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttatacgtacttggtgttAtatgtatttttatatctgta	8	3	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38925932	T	T	38925932	1	4	60	0	1	0	0	0	0	0	0	0	8534	464	16	5		5	KRT26	17	38925932	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	66434	38925932	42269278	1183	68038											
KRTAP4-5	85289	broad.mit.edu	37	chr17	39305599	39305599	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgcagcagcaggggcggcAgcagctggattcacagcaag	15	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39305599	C	C	39305599	3	2	60	1	0	0	0	0	1	0	0	0	8626	188	7	5	128	5	KRTAP4-5	17	39305599	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	379667	39305599	41889611	1184	68039											
DHX58	79132	broad.mit.edu	37	chr17	40255790	40255790	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctgggccgcccgcttggtCaaggctgcctgctgcagatc	14	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40255790	A	A	40255790	3	1	60	1	0	0	0	0	1	0	0	0	4554	825	29	3	458	3	DHX58	17	40255790	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	950191	40255790	40939420	1185	68040											
AARSD1	80755	broad.mit.edu	37	chr17	41107293	41107293	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttcccagtcgtttctgaTgttggggacataaatcaata	9	8	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41107293	C	C	41107293	1	2	60	0	1	0	0	0	0	0	0	0	21	1479	51	5		5	AARSD1	17	41107293	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	851503	41107293	40087917	1186	68041											
DCAKD	79877	broad.mit.edu	37	chr17	43102105	43102105	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggtcgctaaggatagggCaaaagggcactgtaggtcct	14	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43102105	T	T	43102105	1	4	60	0	1	0	0	0	0	0	0	0	4312	725	25	4		4	DCAKD	17	43102105	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1994812	43102105	38093105	1187	68042											
FMNL1	752	broad.mit.edu	37	chr17	43318481	43318481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggtcggggctcaccatGtgctggtgctacagctgaca	15	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43318481	T	T	43318481	1	4	60	0	1	0	0	0	0	0	0	0	6009	1392	48	3		3	FMNL1	17	43318481	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	216376	43318481	37876729	1188	68043											
NSF	4905	broad.mit.edu	37	chr17	44819128	44819128	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagatgttaatagtacttggTttttgtttttgttgttgttg	11	1	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44819128	G	G	44819128	1	3	60	0	1	0	0	0	0	0	0	0	10766	1740	60	5		5	NSF	17	44819128	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1500647	44819128	36376082	1189	68044											
WNT9B	7484	broad.mit.edu	37	chr17	44953888	44953888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacccagcttctgccggcCcagcaagtactcacctggca	8	18	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44953888	A	A	44953888	3	1	60	1	0	0	0	0	1	0	0	0	17526	623	22	2	892	2	WNT9B	17	44953888	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	134760	44953888	36241322	1190	68045											
HOXB3	3213	broad.mit.edu	37	chr17	46636304	46636304	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagggtgtgtgtgtgtgtgAgagagagagagagagaaagg	21	0	0	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46636304	T	T	46636304	1	4	60	0	1	0	0	0	0	0	0	0	7369	319	11	5		5	HOXB3	17	46636304	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1682416	46636304	34558906	1191	68046											
IGF2BP1	10642	broad.mit.edu	37	chr17	47122378	47122378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accacccgaaacacctgactCcaaagttcgtatggttatca	6	13	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47122378	A	A	47122378	3	1	60	1	0	0	0	0	1	0	0	0	7643	855	30	3	1392	3	IGF2BP1	17	47122378	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	486074	47122378	34072832	1192	68047											
CA10	56934	broad.mit.edu	37	chr17	49744787	49744787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatcccaaatacctcctaCccagtttaaaacagcccttg	3	15	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49744787	A	A	49744787	1	1	60	0	1	0	0	0	0	0	0	0	2537	522	18	3		3	CA10	17	49744787	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2622409	49744787	31450423	1193	68048											
CA10	56934	broad.mit.edu	37	chr17	49824823	49824823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatactagaagcttgttAttgacttcgatgtcaatttg	8	5	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49824823	G	G	49824823	1	3	60	0	1	0	0	0	0	0	0	0	2537	464	16	5		5	CA10	17	49824823	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	80036	49824823	31370387	1194	68049											
KIF2B	84643	broad.mit.edu	37	chr17	51901063	51901063	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcgtgaggaagcggcctctCaaccagcgagagacaacctt	12	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901063	T	T	51901063	2	4	60	1	0	0	0	0	0	0	0	1	8368	813	29	4		4	KIF2B	17	51901063	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2076240	51901063	29294147	1195	68050											
EPX	8288	broad.mit.edu	37	chr17	56270546	56270546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatcagtgaggggcatgGgccccagccaagttcatctc	14	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56270546	T	T	56270546	1	4	60	0	1	0	0	0	0	0	0	0	5242	1247	43	2		2	EPX	17	56270546	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4369483	56270546	24924664	1196	68051											
SCN4A	6329	broad.mit.edu	37	chr17	62025277	62025277	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaggaagtcgagccagcaCcaggcgttggtgaagtacac	14	9	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62025277	G	G	62025277	3	3	60	1	0	0	0	0	1	0	0	0	14033	508	18	4	2251	4	SCN4A	17	62025277	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5754731	62025277	19169933	1197	68052											
ABCA10	10349	broad.mit.edu	37	chr17	67178223	67178223	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagatttgaactcacatggTaggctctagagccctcatcc	8	12	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67178223	C	C	67178223	1	2	60	0	1	0	0	0	0	0	0	0	29	1653	57	5		5	ABCA10	17	67178223	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	5152946	67178223	14016987	1198	68053											
ABCA5	23461	broad.mit.edu	37	chr17	67255963	67255963	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaagaacatgtagcagctCatgactaaaagatttgttgt	9	5	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67255963	A	A	67255963	1	1	60	0	1	0	0	0	0	0	0	0	35	841	29	3		3	ABCA5	17	67255963	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	77740	67255963	13939247	1199	68054											
ABCA5	23461	broad.mit.edu	37	chr17	67266920	67266920	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaagacacttattacAtactgtatataagcggatat	5	5	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67266920	G	G	67266920	1	3	60	0	1	0	0	0	0	0	0	0	35	232	8	5		5	ABCA5	17	67266920	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	10957	67266920	13928290	1200	68055											
KCNJ2	3759	broad.mit.edu	37	chr17	68171168	68171168	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagaagcactggagtcCccagcagaagcgatgggcag	14	10	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68171168	T	T	68171168	1	4	60	0	1	0	0	0	0	0	0	0	8121	638	22	4		4	KCNJ2	17	68171168	5'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	904248	68171168	13024042	1201	68056											
SDK2	54549	broad.mit.edu	37	chr17	71344885	71344885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagagagcgggggagtgGggccgagaggtgcactcact	20	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71344885	T	T	71344885	1	4	60	0	1	0	0	0	0	0	0	0	14082	1247	43	2		2	SDK2	17	71344885	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3173717	71344885	9850325	1202	68057											
SDK2	54549	broad.mit.edu	37	chr17	71354344	71354344	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcggtcctggggcacCtgcagacagcacacagaggc	15	14	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71354344	A	A	71354344	5	1	60	1	0	0	0	0	0	0	1	0	14082	695	24	2	1075	2	SDK2	17	71354344	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	9459	71354344	9840866	1203	68058											
GPR142	350383	broad.mit.edu	37	chr17	72363784	72363784	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatgcacagaaaagccagcAttcttgtctcagccattcca	6	14	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72363784	T	T	72363784	3	4	60	1	0	0	0	0	1	0	0	0	6715	217	8	5	142	5	GPR142	17	72363784	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1009440	72363784	8831426	1204	68059											
SRP68	6730	broad.mit.edu	37	chr17	74056564	74056564	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttaaagagctcttccccctCcacatgctacttcaatgaat	4	14	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74056564	G	G	74056564	1	3	60	0	1	0	0	0	0	0	0	0	15274	870	30	4		4	SRP68	17	74056564	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1692780	74056564	7138646	1205	68060											
ZACN	353174	broad.mit.edu	37	chr17	74075704	74075704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagggaacaggactcagcCctggatagtgctggggtctc	16	10	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74075704	A	A	74075704	1	1	60	0	1	0	0	0	0	0	0	0	17637	638	22	2		2	ZACN	17	74075704	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	19140	74075704	7119506	1206	68061											
MXRA7	439921	broad.mit.edu	37	chr17	74684146	74684146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccagcaggacacagacCacccccgacactgtcaggcc	8	19	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74684146	A	A	74684146	1	1	60	0	1	0	0	0	0	0	0	0	10098	609	21	2		2	MXRA7	17	74684146	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	608442	74684146	6511064	1207	68062											
CCDC40	55036	broad.mit.edu	37	chr17	78063608	78063608	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatccaactggcaaaagaGatgcgttcctcagtggattc	9	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78063608	A	A	78063608	2	1	60	1	0	0	0	0	0	0	0	1	2839	933	33	4		4	CCDC40	17	78063608	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3379462	78063608	3131602	1208	68063											
SLC25A10	1468	broad.mit.edu	37	chr17	79687006	79687006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccctgtctccctccagGgcctcgtcccagctggcatc	8	18	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79687006	T	T	79687006	3	4	60	1	0	0	0	0	1	0	0	0	14586	1246	43	2	805	2	SLC25A10	17	79687006	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1623398	79687006	1508204	1209	68064											
USP14	9097	broad.mit.edu	37	chr18	197564	197564	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattattttggaagaacttTgtagatcattcactgccagg	9	6	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197564	G	G	197564	1	3	60	0	1	0	0	0	0	0	0	0	17171	1827	63	5		5	USP14	18	197564	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08		197564	77879684	1210	68065											
LPIN2	9663	broad.mit.edu	37	chr18	2920556	2920557	+	Intron	DNP	TC	GA	GA													ggcaggttcagaggcaggccTcagtcccatcacagggctca							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	2920557	GA	GA	2920556	1	3	60	0	1	0	0	0	0	0	0	0	9006	1566	54	5		5	LPIN2	18	2920556	Intron	DNP	TC	TCGA-17-Z030-01A-01W-0746-08	2722992	2920556	75156692	1211	68066											
KIAA0802	23255	broad.mit.edu	37	chr18	8784395	8784395	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaagacgtcgggcttcGggagcgggaagccatcggag	18	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8784395	T	T	8784395	3	4	60	1	0	0	0	0	1	0	0	0	8264	1116	39	1	1299	1	KIAA0802	18	8784395	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5863839	8784395	69292853	1212	68067											
ROCK1	6093	broad.mit.edu	37	chr18	18539772	18539772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaagttagctctcaaccCctttaaaattcaatcaaagg	4	10	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18539772	A	A	18539772	1	1	60	0	1	0	0	0	0	0	0	0	13628	638	22	2		2	ROCK1	18	18539772	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	9755377	18539772	59537476	1213	68068											
DSC3	1825	broad.mit.edu	37	chr18	28609555	28609555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccatctcctcttggcacGcctgagaacagtttctctag	8	14	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28609555	T	T	28609555	3	4	60	1	0	0	0	0	1	0	0	0	4807	1087	38	3	2379	3	DSC3	18	28609555	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	10069783	28609555	49467693	1214	68069											
C18orf34	374864	broad.mit.edu	37	chr18	30847129	30847129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatttggaaatagaaaatGgcgttctaagtgggaagtag	12	2	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30847129	T	T	30847129	1	4	60	0	1	0	0	0	0	0	0	0	1920	1363	47	2		2	C18orf34	18	30847129	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2237574	30847129	47230119	1215	68070											
RIT2	6014	broad.mit.edu	37	chr18	40503707	40503707	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccacctcgcatgtactgctCccgcatggctgtgaattctg	9	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40503707	A	A	40503707	4	1	60	1	0	0	0	0	0	1	0	0	13498	864	30	3	405	3	RIT2	18	40503707	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	9656578	40503707	37573541	1216	68071											
SETBP1	26040	broad.mit.edu	37	chr18	42532344	42532344	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcgtaggacttcagacttGaagtcaaagaagaagcgtgg	12	7	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42532344	T	T	42532344	3	4	60	1	0	0	0	0	1	0	0	0	14242	1281	45	3	3242	3	SETBP1	18	42532344	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2028637	42532344	35544904	1217	68072											
SETBP1	26040	broad.mit.edu	37	chr18	42533272	42533272	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttcaagatgaaccgcaagGagagaagttcttatgactcc	9	10	2	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42533272	T	T	42533272	4	4	60	1	0	0	0	0	0	1	0	0	14242	1175	41	3	4170	3	SETBP1	18	42533272	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	928	42533272	35543976	1218	68073											
SLC14A2	8170	broad.mit.edu	37	chr18	43219625	43219625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttccactccattactcccCcgaggaatggctcaaatctg	7	15	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43219625	A	A	43219625	1	1	60	0	1	0	0	0	0	0	0	0	14510	638	22	2		2	SLC14A2	18	43219625	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	686353	43219625	34857623	1219	68074											
SMAD4	4089	broad.mit.edu	37	chr18	48584798	48584798	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatcttcagcaccacccGcctatgccgccccatcccgg	8	21	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48584798	T	T	48584798	2	4	60	1	0	0	0	0	0	0	0	1	14874	1074	38	3		3	SMAD4	18	48584798	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5365173	48584798	29492450	1220	68075											
BCL2	596	broad.mit.edu	37	chr18	60866224	60866224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacagacacagagacacCcacagacatacacagacaca	5	15	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60866224	A	A	60866224	1	1	60	0	1	0	0	0	0	0	0	0	1370	638	22	2		2	BCL2	18	60866224	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	12281426	60866224	17211024	1221	68076											
BCL2	596	broad.mit.edu	37	chr18	60985504	60985504	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagagctcctccaccacCgtggcaaagcgtccccgcgc	10	18	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60985504	A	A	60985504	2	1	60	1	0	0	0	0	0	0	0	1	1370	639	23	1		1	BCL2	18	60985504	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	119280	60985504	17091744	1222	68077											
SERPINB7	8710	broad.mit.edu	37	chr18	61468104	61468104	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgacttgactttcagtgctCtgggaaggcagtcgccatga	13	9	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61468104	T	T	61468104	3	4	60	1	0	0	0	0	1	0	0	0	14219	913	32	4	624	4	SERPINB7	18	61468104	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	482600	61468104	16609144	1223	68078											
CDH19	28513	broad.mit.edu	37	chr18	64235932	64235932	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagaattgtttccattgtCtaaatcagatcttagctgca	7	7	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64235932	A	A	64235932	3	1	60	1	0	0	0	0	1	0	0	0	3134	913	32	3	2147	3	CDH19	18	64235932	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2767828	64235932	13841316	1224	68079											
TSHZ1	10194	broad.mit.edu	37	chr18	72998442	72998442	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcgcttcaggacctggcGcccccctgctcccctgagcc	12	20	1	1	rs149658226	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72998442	T	T	72998442	2	4	60	1	0	0	0	0	0	0	0	1	16748	1074	38	3		3	TSHZ1	18	72998442	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8762510	72998442	5078806	1225	68080											
ATCAY	85300	broad.mit.edu	37	chr19	3905691	3905691	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggggcctgctggagcccAccccccccaccccacctttc	8	22	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3905691	C	C	3905691	1	2	60	0	1	0	0	0	0	0	0	0	1081	174	6	5		5	ATCAY	19	3905691	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08		3905691	55223292	1226	68081											
FSD1	79187	broad.mit.edu	37	chr19	4323510	4323510	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagctgagcccctcccccCtccccccgctgtccctcagg	8	22	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4323510	T	T	4323510	1	4	60	0	1	0	0	0	0	0	0	0	6130	696	24	4		4	FSD1	19	4323510	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	417819	4323510	54805473	1227	68082											
PTPRS	5802	broad.mit.edu	37	chr19	5207955	5207955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgcaccatggccggcCgctgggttcgtagcatcttc	12	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5207955	A	A	5207955	3	1	60	1	0	0	0	0	1	0	0	0	12919	652	23	1	98	1	PTPRS	19	5207955	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	884445	5207955	53921028	1228	68083											
RANBP3	8498	broad.mit.edu	37	chr19	5924714	5924714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcttccctctctcacttGctactgaaggcatccccatc	7	16	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5924714	T	T	5924714	1	4	60	0	1	0	0	0	0	0	0	0	13137	1334	46	3		3	RANBP3	19	5924714	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	716759	5924714	53204269	1229	68084											
C19orf59	199675	broad.mit.edu	37	chr19	7743898	7743898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccccgacaggaggtggaGgagggtgggtggggcttcag	22	8	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7743898	T	T	7743898	1	4	60	0	1	0	0	0	0	0	0	0	1959	1015	35	2		2	C19orf59	19	7743898	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1819184	7743898	51385085	1230	68085											
CD209	30835	broad.mit.edu	37	chr19	7807761	7807761	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctccaaggatgggccagaAaaacaagctctacaccaggg	11	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7807761	G	G	7807761	1	3	60	0	1	0	0	0	0	0	0	0	3014	29	1	5		5	CD209	19	7807761	3'UTR	SNP	A	TCGA-17-Z030-01A-01W-0746-08	63863	7807761	51321222	1231	68086											
ELAVL1	1994	broad.mit.edu	37	chr19	8056513	8056513	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacccggtttactaaaacgCctccatttctttacctgcta	4	13	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8056513	T	T	8056513	1	4	60	0	1	0	0	0	0	0	0	0	5091	754	26	4		4	ELAVL1	19	8056513	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	248752	8056513	51072470	1232	68087											
MUC16	94025	broad.mit.edu	37	chr19	9007492	9007492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgactggtacttacttgtgGggctggggacgggggatgga	19	5	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9007492	T	T	9007492	3	4	60	1	0	0	0	0	1	0	0	0	10067	1232	43	2	4215	2	MUC16	19	9007492	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	950979	9007492	50121491	1233	68088											
MUC16	94025	broad.mit.edu	37	chr19	9074611	9074611	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgtcccccatgatgtGggaggtaaccaatggagatg	14	7	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9074611	C	C	9074611	3	2	60	1	0	0	0	0	1	0	0	0	10067	1348	47	4	31016	4	MUC16	19	9074611	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	67119	9074611	50054372	1234	68089											
OR7G1	125962	broad.mit.edu	37	chr19	9225524	9225524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaaggaaacagcctacCaataagtttcctcaaagctt	5	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9225524	A	A	9225524	3	1	60	1	0	0	0	0	1	0	0	0	11316	608	21	2	93	2	OR7G1	19	9225524	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	150913	9225524	49903459	1235	68090											
ZNF317	57693	broad.mit.edu	37	chr19	9271828	9271828	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accttgtaaagaaacgagttGagtgtaggcagtgtggcaag	14	5	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9271828	T	T	9271828	4	4	60	1	0	0	0	0	0	1	0	0	17961	1291	45	3	1529	3	ZNF317	19	9271828	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	46304	9271828	49857155	1236	68091											
ZNF177	7730	broad.mit.edu	37	chr19	9492394	9492394	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgaaaaagcctttagcAcaagcactaaccttataatg	7	8	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9492394	G	G	9492394	3	3	60	1	0	0	0	0	1	0	0	0	17872	159	6	5	1405	5	ZNF177	19	9492394	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	220566	9492394	49636589	1237	68092											
KEAP1	9817	broad.mit.edu	37	chr19	10610277	10610277	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacttctcgcccatggagaTggaggccgtgtaggcgaatt	13	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610277	A	A	10610277	3	1	60	1	0	0	0	0	1	0	0	0	8211	1464	51	5	1461	5	KEAP1	19	10610277	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1117883	10610277	48518706	1238	68093											
DOCK6	57572	broad.mit.edu	37	chr19	11326604	11326604	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcaaaggcctttttcccCtgggggtgcagagaactggg	14	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11326604	A	A	11326604	5	1	60	1	0	0	0	0	0	0	1	0	4731	695	24	2	2321	2	DOCK6	19	11326604	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	716327	11326604	47802379	1239	68094											
SLC1A6	6511	broad.mit.edu	37	chr19	15072906	15072906	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtgtttcatgccaccaatGaccagcccaaaggccacaga	8	13	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15072906	T	T	15072906	2	4	60	1	0	0	0	0	0	0	0	1	14549	1277	45	3		3	SLC1A6	19	15072906	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3746302	15072906	44056077	1240	68095											
CYP4F12	66002	broad.mit.edu	37	chr19	15789216	15789216	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctatcaccaatgcctcagGtacccatgcagagcttgtgg	10	12	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15789216	T	T	15789216	5	4	60	1	0	0	0	0	0	0	1	0	4220	1275	44	3	350	3	CYP4F12	19	15789216	Splice_Site	SNP	G	TCGA-17-Z030-01A-01W-0746-08	716310	15789216	43339767	1241	68096											
SF4	57794	broad.mit.edu	37	chr19	19413082	19413082	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccccccttacctgaatgcCtggttctcacggttgttctg	10	14	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19413082	G	G	19413082	3	3	60	1	0	0	0	0	1	0	0	0	14268	680	24	4	1090	4	SF4	19	19413082	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3623866	19413082	39715901	1242	68097											
CILP2	148113	broad.mit.edu	37	chr19	19653355	19653355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggtgtctgtgctgacaGccgcgccaacatcagggccc	13	15	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19653355	T	T	19653355	3	4	60	1	0	0	0	0	1	0	0	0	3461	971	34	3	782	3	CILP2	19	19653355	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	240273	19653355	39475628	1243	68098											
ZNF208	7757	broad.mit.edu	37	chr19	22156642	22156642	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttgccacattcttcacaTttgtagggtttctctccagt	6	12	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22156642	A	A	22156642	3	1	60	1	0	0	0	0	1	0	0	0	17892	1490	52	5	2652	5	ZNF208	19	22156642	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2503287	22156642	36972341	1244	68099											
ZNF536	9745	broad.mit.edu	37	chr19	31041624	31041624	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcacagagaagaattcagGaagctagactctgggttcat	11	7	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31041624	A	A	31041624	1	1	60	0	1	0	0	0	0	0	0	0	18101	1189	41	4		4	ZNF536	19	31041624	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	8884982	31041624	28087359	1245	68100											
TSHZ3	57616	broad.mit.edu	37	chr19	31769558	31769558	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggatctgcgacttccGggcctcaaagtgccatgcat	10	13	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31769558	A	A	31769558	3	1	60	1	0	0	0	0	1	0	0	0	16750	1115	39	4	2108	4	TSHZ3	19	31769558	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	727934	31769558	27359425	1246	68101											
ANKRD27	84079	broad.mit.edu	37	chr19	33110110	33110110	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acggctcttcagctggacacCactgcccagggccgccaagg	12	16	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33110110	G	G	33110110	1	3	60	0	1	0	0	0	0	0	0	0	655	609	21	4		4	ANKRD27	19	33110110	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1340552	33110110	26018873	1247	68102											
MAG	4099	broad.mit.edu	37	chr19	35804348	35804348	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagtatgctgaaatccgGgtcaagtgaaggagctgggg	17	6	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35804348	T	T	35804348	2	4	60	1	0	0	0	0	0	0	0	1	9250	1219	43	2		2	MAG	19	35804348	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2694238	35804348	23324635	1248	68103											
KIRREL2	84063	broad.mit.edu	37	chr19	36357307	36357307	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaacccacatcctttggGcccccagatctggcccccgg	8	18	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36357307	T	T	36357307	2	4	60	1	0	0	0	0	0	0	0	1	8396	1190	42	3		3	KIRREL2	19	36357307	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	552959	36357307	22771676	1249	68104											
ZNF260	339324	broad.mit.edu	37	chr19	37005529	37005529	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtataatgaggttttcCttctggctaaaagcttttcc	8	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37005529	T	T	37005529	2	4	60	1	0	0	0	0	0	0	0	1	17928	680	24	4		4	ZNF260	19	37005529	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	648222	37005529	22123454	1250	68105											
ZNF568	374900	broad.mit.edu	37	chr19	37428074	37428074	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagtcaccaaaccggatgtGatattcaagttggagcaaga	10	8	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37428074	T	T	37428074	2	4	60	1	0	0	0	0	0	0	0	1	18126	1277	45	3		3	ZNF568	19	37428074	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	422545	37428074	21700909	1251	68106											
ZNF420	147923	broad.mit.edu	37	chr19	37618139	37618139	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgaaaactgtgatcttgaAgagtccaattccagggatta	9	7	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37618139	G	G	37618139	2	3	60	1	0	0	0	0	0	0	0	1	18024	69	3	5		5	ZNF420	19	37618139	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	190065	37618139	21510844	1252	68107											
ZNF540	163255	broad.mit.edu	37	chr19	38102961	38102961	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttacccacaacttaatcgAcatcagaaaattcacactgg	4	12	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38102961	T	T	38102961	2	4	60	1	0	0	0	0	0	0	0	1	18102	262	10	5		5	ZNF540	19	38102961	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	484822	38102961	21026022	1253	68108											
DPF1	8193	broad.mit.edu	37	chr19	38709593	38709593	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagtccataatggtctccTcctccttcagctcaatcttc	5	15	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38709593	A	A	38709593	3	1	60	1	0	0	0	0	1	0	0	0	4756	1551	54	5	825	5	DPF1	19	38709593	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	606632	38709593	20419390	1254	68109											
PAPL	390928	broad.mit.edu	37	chr19	39575844	39575844	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagcccttcctgctgtaCctgtggggagctgatctcct	10	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39575844	A	A	39575844	1	1	60	0	1	0	0	0	0	0	0	0	11521	522	18	3		3	PAPL	19	39575844	5'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	866251	39575844	19553139	1255	68110											
LGALS14	56891	broad.mit.edu	37	chr19	40197260	40197260	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatacacactgcctgtttcCttgcctgttggttcgtgcgt	9	13	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40197260	A	A	40197260	2	1	60	1	0	0	0	0	0	0	0	1	8813	668	24	2		2	LGALS14	19	40197260	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	621416	40197260	18931723	1256	68111											
CLC	1178	broad.mit.edu	37	chr19	40225218	40225218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtctctttgccccttcCgtggtcgagcaaagacttgt	9	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40225218	A	A	40225218	1	1	60	0	1	0	0	0	0	0	0	0	3487	667	23	1		1	CLC	19	40225218	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	27958	40225218	18903765	1257	68112											
FCGBP	8857	broad.mit.edu	37	chr19	40384136	40384136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggtgggccacagacCtcatagtggctgttttctgg	16	9	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40384136	A	A	40384136	3	1	60	1	0	0	0	0	1	0	0	0	5835	680	24	2	6807	2	FCGBP	19	40384136	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	158918	40384136	18744847	1258	68113											
PRX	57716	broad.mit.edu	37	chr19	40900086	40900086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcatcgccctcctgcccCcgagaggctttagaaggggc	13	15	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40900086	A	A	40900086	2	1	60	1	0	0	0	0	0	0	0	1	12748	610	22	2		2	PRX	19	40900086	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	515950	40900086	18228897	1259	68114											
CYP2S1	29785	broad.mit.edu	37	chr19	41711806	41711806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttgtactccacactcgaGgaccaaatggactggggtgg	13	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41711806	T	T	41711806	1	4	60	0	1	0	0	0	0	0	0	0	4207	1015	35	2		2	CYP2S1	19	41711806	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	811720	41711806	17417177	1260	68115											
TGFB1	7040	broad.mit.edu	37	chr19	41847732	41847732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctggagcacctggtcagCagatggcagtcatgccccca	11	14	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41847732	A	A	41847732	1	1	60	0	1	0	0	0	0	0	0	0	15939	725	25	3		3	TGFB1	19	41847732	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	135926	41847732	17281251	1261	68116											
GRIK5	2901	broad.mit.edu	37	chr19	42566721	42566721	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccgccaagctgacgtcctCgttactggggtacaggctga	13	12	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42566721	A	A	42566721	4	1	60	1	0	0	0	0	0	1	0	0	6843	893	31	3	2579	3	GRIK5	19	42566721	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	718989	42566721	16562262	1262	68117											
PSG1	5669	broad.mit.edu	37	chr19	43376024	43376024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacacccaatagaaagaGggtcctgttggtttcggaca	12	8	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43376024	T	T	43376024	3	4	60	1	0	0	0	0	1	0	0	0	12759	1000	35	2	724	2	PSG1	19	43376024	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	809303	43376024	15752959	1263	68118											
PSG7	5676	broad.mit.edu	37	chr19	43430685	43430685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcatttctcgtgacactgGgtagaatgaggatcctgttt	10	7	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43430685	T	T	43430685	3	4	60	1	0	0	0	0	1	0	0	0	12766	1232	43	2	378	2	PSG7	19	43430685	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	54661	43430685	15698298	1264	68119											
PSG6	5675	broad.mit.edu	37	chr19	43514677	43514677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggaagggtgtgaaagCaagcctagttctctgaggct	13	9	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43514677	A	A	43514677	1	1	60	0	1	0	0	0	0	0	0	0	12765	725	25	3		3	PSG6	19	43514677	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	83992	43514677	15614306	1265	68120											
PSG2	5670	broad.mit.edu	37	chr19	43579524	43579524	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acggaggagattcagggtgaCtgggtcactgcggctggcac	17	9	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43579524	G	G	43579524	3	3	60	1	0	0	0	0	1	0	0	0	12761	565	20	4	328	4	PSG2	19	43579524	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	64847	43579524	15549459	1266	68121											
ZNF226	7769	broad.mit.edu	37	chr19	44681152	44681152	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgacttcagattcaccagctGatccatacgggtgagaaacc	9	12	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44681152	T	T	44681152	2	4	60	1	0	0	0	0	0	0	0	1	17906	1277	45	3		3	ZNF226	19	44681152	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1101628	44681152	14447831	1267	68122											
ZNF233	353355	broad.mit.edu	37	chr19	44770584	44770584	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttccctgaacttggggatGtgaattttctaattcctcag	9	9	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44770584	A	A	44770584	1	1	60	0	1	0	0	0	0	0	0	0	17912	1392	48	4		4	ZNF233	19	44770584	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	89432	44770584	14358399	1268	68123											
MARK4	57787	broad.mit.edu	37	chr19	45783904	45783904	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagcgacaccaccaacggAacaagttccagcaaaggcac	8	16	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45783904	T	T	45783904	2	4	60	1	0	0	0	0	0	0	0	1	9407	233	9	5		5	MARK4	19	45783904	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1013320	45783904	13345079	1269	68124											
PPP1R13L	10848	broad.mit.edu	37	chr19	45899588	45899588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccattccccgggcctccaCcactcacgttcatagctcgc	6	20	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45899588	A	A	45899588	1	1	60	0	1	0	0	0	0	0	0	0	12459	522	18	3		3	PPP1R13L	19	45899588	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	115684	45899588	13229395	1270	68125											
IGFL2	147920	broad.mit.edu	37	chr19	46664088	46664088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtgaagctgaaggttcaGggtgtgaattcccagtgcca	14	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46664088	T	T	46664088	3	4	60	1	0	0	0	0	1	0	0	0	7657	991	35	2	357	2	IGFL2	19	46664088	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	764500	46664088	12464895	1271	68126											
STRN4	29888	broad.mit.edu	37	chr19	47228504	47228504	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcctgcctcctgccgtGggcctcccgcgatggcagtg	14	16	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47228504	A	A	47228504	1	1	60	0	1	0	0	0	0	0	0	0	15449	1363	47	4		4	STRN4	19	47228504	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	564416	47228504	11900479	1272	68127											
SLC8A2	6543	broad.mit.edu	37	chr19	47969457	47969457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaccactgcccgtgccgcCttgtcacccagcgacgggtc	10	18	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47969457	A	A	47969457	3	1	60	1	0	0	0	0	1	0	0	0	14821	680	24	2	2597	2	SLC8A2	19	47969457	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	740953	47969457	11159526	1273	68128											
BCAT2	587	broad.mit.edu	37	chr19	49300495	49300495	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgttcatggttcccaccTcggtgagctggtggtcgggc	15	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49300495	A	A	49300495	3	1	60	1	0	0	0	0	1	0	0	0	1360	1551	54	5	407	5	BCAT2	19	49300495	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1331038	49300495	9828488	1274	68129											
VRK3	51231	broad.mit.edu	37	chr19	50510998	50510998	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctgagggctacagctggtCttctgagggctacccctggt	13	11	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50510998	A	A	50510998	3	1	60	1	0	0	0	0	1	0	0	0	17348	912	32	3	1089	3	VRK3	19	50510998	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1210503	50510998	8617985	1275	68130											
SHANK1	50944	broad.mit.edu	37	chr19	51172584	51172584	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggagggggaccctggcgggGagggtctccctgctccacta	17	12	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51172584	C	C	51172584	1	2	60	0	1	0	0	0	0	0	0	0	14377	1189	41	4		4	SHANK1	19	51172584	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	661586	51172584	7956399	1276	68131											
HAS1	3036	broad.mit.edu	37	chr19	52220291	52220291	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctccacattgaaggctacCcagtatcgcaggctgcttag	10	13	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52220291	T	T	52220291	4	4	60	1	0	0	0	0	0	1	0	0	7027	624	22	4	890	4	HAS1	19	52220291	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1047707	52220291	6908692	1277	68132											
FPR2	2358	broad.mit.edu	37	chr19	52272116	52272116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgttacctgaacctggccCtggctgacttttctttcacg	8	13	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52272116	A	A	52272116	3	1	60	1	0	0	0	0	1	0	0	0	6099	680	24	2	207	2	FPR2	19	52272116	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	51825	52272116	6856867	1278	68133											
ZNF534	147658	broad.mit.edu	37	chr19	52937330	52937330	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactacaggaacctggtctcCctaggtgaggataatgtccg	11	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52937330	T	T	52937330	2	4	60	1	0	0	0	0	0	0	0	1	18100	610	22	4		4	ZNF534	19	52937330	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	665214	52937330	6191653	1279	68134											
ZNF534	147658	broad.mit.edu	37	chr19	52955184	52955184	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaggttttggctctacCggaaagaattaaaatttatg	10	5	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52955184	A	A	52955184	1	1	60	0	1	0	0	0	0	0	0	0	18100	667	23	1		1	ZNF534	19	52955184	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	17854	52955184	6173799	1280	68135											
ZNF347	84671	broad.mit.edu	37	chr19	53643919	53643919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggtagttaggcttgaaCggacactaaaggctttccca	12	8	0	1	rs150489253	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53643919	A	A	53643919	3	1	60	1	0	0	0	0	1	0	0	0	17987	536	19	3	361	3	ZNF347	19	53643919	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	688735	53643919	5485064	1281	68136											
ZNF331	55422	broad.mit.edu	37	chr19	54080157	54080157	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaaaagacctgctactagaGaaggcacccctcctagaaca	7	13	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54080157	T	T	54080157	4	4	60	1	0	0	0	0	0	1	0	0	17975	943	33	3	353	3	ZNF331	19	54080157	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	436238	54080157	5048826	1282	68137											
LILRA1	11024	broad.mit.edu	37	chr19	55106734	55106734	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagccccgtacccatggGtggtcccgggccatcttctc	10	17	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55106734	T	T	55106734	2	4	60	1	0	0	0	0	0	0	0	1	8856	1248	44	3		3	LILRA1	19	55106734	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1026577	55106734	4022249	1283	68138											
KIR2DL3	3804	broad.mit.edu	37	chr19	55255151	55255151	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagagagagagagcattaGgtcatagagcaggggagtga	18	3	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55255151	A	A	55255151	1	1	60	0	1	0	0	0	0	0	0	0	8388	1015	35	4		4	KIR2DL3	19	55255151	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	148417	55255151	3873832	1284	68139											
KIR2DL3	3804	broad.mit.edu	37	chr19	55270550	55270550	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaccaggtgtcataacagagGacagacacaggggccatacc	12	11	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55270550	T	T	55270550	1	4	60	0	1	0	0	0	0	0	0	0	8388	1189	41	3		3	KIR2DL3	19	55270550	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	15399	55270550	3858433	1285	68140											
KIR2DL1	3802	broad.mit.edu	37	chr19	55284756	55284756	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggatgataaagagagacaCcttctaaactcacaacctct	7	10	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55284756	T	T	55284756	1	4	60	0	1	0	0	0	0	0	0	0	8387	522	18	4		4	KIR2DL1	19	55284756	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	14206	55284756	3844227	1286	68141											
NLRP7	199713	broad.mit.edu	37	chr19	55451464	55451464	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attctctgtgcttgggctagGatgcttggaatgtcatcctg	12	8	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55451464	A	A	55451464	2	1	60	1	0	0	0	0	0	0	0	1	10577	1164	41	4		4	NLRP7	19	55451464	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	166708	55451464	3677519	1287	68142											
BRSK1	84446	broad.mit.edu	37	chr19	55814611	55814611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggagcggaggagacctcCtctgagcattgatgttggac	15	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55814611	A	A	55814611	1	1	60	0	1	0	0	0	0	0	0	0	1532	696	24	2		2	BRSK1	19	55814611	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	363147	55814611	3314372	1288	68143											
NLRP8	126205	broad.mit.edu	37	chr19	56459540	56459540	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttcatctcttgatagagcGtttccctggacgacgcgctt	11	11	2	2	rs149738419		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56459540	A	A	56459540	3	1	60	1	0	0	0	0	1	0	0	0	10578	1145	40	4	274	4	NLRP8	19	56459540	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	644929	56459540	2669443	1289	68144											
NLRP5	126206	broad.mit.edu	37	chr19	56549544	56549544	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgagagtctcccagtgCgccctgcagaagctgatgtg	13	12	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56549544	A	A	56549544	4	1	60	1	0	0	0	0	0	1	0	0	10575	776	27	3	2807	3	NLRP5	19	56549544	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	90004	56549544	2579439	1290	68145											
ZNF667	63934	broad.mit.edu	37	chr19	56969411	56969411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatcttggacttctcagcCtccagaactgtgagaagtag	10	9	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56969411	A	A	56969411	1	1	60	0	1	0	0	0	0	0	0	0	18201	696	24	2		2	ZNF667	19	56969411	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	419867	56969411	2159572	1291	68146											
ZNF71	58491	broad.mit.edu	37	chr19	57133591	57133591	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcaacaagagctcctcGctcaccctgcaccagaggaa	8	16	2	2	rs17851130		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57133591	T	T	57133591	2	4	60	1	0	0	0	0	0	0	0	1	18242	1074	38	3		3	ZNF71	19	57133591	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	164180	57133591	1995392	1292	68147											
ZNF772	400720	broad.mit.edu	37	chr19	57985206	57985206	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatgggtttgcggctaaaGgttttcccacattcaccgca	10	10	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57985206	A	A	57985206	2	1	60	1	0	0	0	0	0	0	0	1	18274	987	35	4		4	ZNF772	19	57985206	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	851615	57985206	1143777	1293	68148											
ANGPT4	51378	broad.mit.edu	37	chr20	858757	858757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggaccccagcccgcccaCtagctgaagaccccagcccc	10	20	0	2	rs73602182		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	858757	A	A	858757	1	1	60	0	1	0	0	0	0	0	0	0	612	580	20	3		3	ANGPT4	20	858757	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08		858757	62166763	1294	68149											
PSMF1	9491	broad.mit.edu	37	chr20	1098707	1098707	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaggttttagcgcacgaTgtagcacacaataaacactt	8	8	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1098707	C	C	1098707	1	2	60	0	1	0	0	0	0	0	0	0	12816	1479	51	5		5	PSMF1	20	1098707	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	239950	1098707	61926813	1295	68150											
TMC2	117532	broad.mit.edu	37	chr20	2573092	2573092	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaatgaacttccatttgtgAttataaaggctaaagattgc	7	7	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2573092	G	G	2573092	1	3	60	0	1	0	0	0	0	0	0	0	16108	348	12	5		5	TMC2	20	2573092	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1474385	2573092	60452428	1296	68151											
TMC2	117532	broad.mit.edu	37	chr20	2578061	2578061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaataatttgtggcaagagCcttcccagaaatgtgagccc	9	10	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2578061	A	A	2578061	1	1	60	0	1	0	0	0	0	0	0	0	16108	754	26	3		3	TMC2	20	2578061	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4969	2578061	60447459	1297	68152											
C20orf141	128653	broad.mit.edu	37	chr20	2795885	2795885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaggatccgatcccagttCctccaaggggcctgggtgct	14	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2795885	A	A	2795885	3	1	60	1	0	0	0	0	1	0	0	0	2111	855	30	3	57	3	C20orf141	20	2795885	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	217824	2795885	60229635	1298	68153											
ATRN	8455	broad.mit.edu	37	chr20	3542927	3542927	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctttcctttccagataaGaacacatggagtatattaca	6	8	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3542927	A	A	3542927	2	1	60	1	0	0	0	0	0	0	0	1	1210	933	33	4		4	ATRN	20	3542927	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	747042	3542927	59482593	1299	68154											
PAK7	57144	broad.mit.edu	37	chr20	9524930	9524930	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaaaagtcattgcccccatCtcctgtggtcaccaactatc	5	15	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9524930	G	G	9524930	1	3	60	0	1	0	0	0	0	0	0	0	11499	928	32	4		4	PAK7	20	9524930	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5982003	9524930	53500590	1300	68155											
PAK7	57144	broad.mit.edu	37	chr20	9721972	9721972	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttaatgaattgtgcacactCctttagattacccttgagcc	6	11	0	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9721972	A	A	9721972	1	1	60	0	1	0	0	0	0	0	0	0	11499	870	30	3		3	PAK7	20	9721972	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	197042	9721972	53303548	1301	68156											
MACROD2	140733	broad.mit.edu	37	chr20	14527931	14527931	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttatctatataatcctcaTgataaatgtgcatgcatggc	7	7	2	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14527931	A	A	14527931	1	1	60	0	1	0	0	0	0	0	0	0	9234	1479	51	5		5	MACROD2	20	14527931	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	4805959	14527931	48497589	1302	68157											
MACROD2	140733	broad.mit.edu	37	chr20	15866484	15866484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcatacttttattattagGgggtaggtaggggtcatttt	11	3	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15866484	T	T	15866484	1	4	60	0	1	0	0	0	0	0	0	0	9234	1247	43	2		2	MACROD2	20	15866484	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1338553	15866484	47159036	1303	68158											
ZNF133	7692	broad.mit.edu	37	chr20	18296740	18296740	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctatgtgtgcggggtgtgTgggcacagcttcagccagaa	15	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18296740	C	C	18296740	2	2	60	1	0	0	0	0	0	0	0	1	17849	1702	59	5		5	ZNF133	20	18296740	Silent	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2430256	18296740	44728780	1304	68159											
CSTL1	128817	broad.mit.edu	37	chr20	23420907	23420907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctgaggctgtagacatGgggatcggatgctggagaaa	16	5	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23420907	T	T	23420907	3	4	60	1	0	0	0	0	1	0	0	0	4021	1348	47	2	5	2	CSTL1	20	23420907	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5124167	23420907	39604613	1305	68160											
CST4	1472	broad.mit.edu	37	chr20	23667549	23667549	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtgcacctttccacatgcAcacctacatgcacacccccc	4	20	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23667549	T	T	23667549	1	4	60	0	1	0	0	0	0	0	0	0	4008	174	6	5		5	CST4	20	23667549	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	246642	23667549	39357971	1306	68161											
DUSP15	128853	broad.mit.edu	37	chr20	30436608	30436608	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtggaaggagtgactcaCgtccgccatgatgagctgct	15	9	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30436608	T	T	30436608	5	4	60	1	0	0	0	0	0	0	1	0	4855	551	19	4		4	DUSP15	20	30436608	Splice_Site	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6769059	30436608	32588912	1307	68162											
ASXL1	171023	broad.mit.edu	37	chr20	31024005	31024005	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacagtggcatggttgatGgaagcagccccagttcttta	11	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31024005	T	T	31024005	4	4	60	1	0	0	0	0	0	1	0	0	1070	1349	47	2	3546	2	ASXL1	20	31024005	Nonsense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	587397	31024005	32001515	1308	68163											
C20orf114	92747	broad.mit.edu	37	chr20	31885544	31885544	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcatcagttgatccctgcCccagacgcgcagacagaaat	9	13	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31885544	T	T	31885544	1	4	60	0	1	0	0	0	0	0	0	0	2104	638	22	4		4	C20orf114	20	31885544	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	861539	31885544	31139976	1309	68164											
ITCH	83737	broad.mit.edu	37	chr20	33050003	33050004	+	Frame_Shift_Ins	INS	-	C	C													gaactaccacctatatagatINSccccgcacaggaaaatctgc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33050004	C	C	33050003	7	5	60	1	0	1	1	0	0	0	0	0	7938	1432	50	0	1447	0	ITCH	20	33050003	Frame_Shift_Ins	INS	-	TCGA-17-Z030-01A-01W-0746-08	1164459	33050003	29975517	1310	68165											
MYH7B	57644	broad.mit.edu	37	chr20	33568395	33568395	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcagacctactcaggcctCttctgtgtcaccatcaaccc	5	17	6	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33568395	T	T	33568395	2	4	60	1	0	0	0	0	0	0	0	1	10134	900	32	4		4	MYH7B	20	33568395	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	518392	33568395	29457125	1311	68166											
ROMO1	140823	broad.mit.edu	37	chr20	34287501	34287501	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccagcctaccgcttccgtCcccgcccgactcttgggcca	8	21	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34287501	A	A	34287501	1	1	60	0	1	0	0	0	0	0	0	0	13633	870	30	3		3	ROMO1	20	34287501	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	719106	34287501	28738019	1312	68167											
C20orf117	140710	broad.mit.edu	37	chr20	35422925	35422925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaggcagcttcttgcccCgggcatctccgccagcaagg	12	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35422925	A	A	35422925	3	1	60	1	0	0	0	0	1	0	0	0	2105	652	23	1	1495	1	C20orf117	20	35422925	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1135424	35422925	27602595	1313	68168											
CHD6	84181	broad.mit.edu	37	chr20	40065872	40065872	+	Intron	DEL	T	-	-													tagggatttctttcttaataTgaaagacggtgtaaatgacc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40065872	-	-	40065872	6	5	60	0	1	1	0	1	0	0	0	0	3360	1479	51	0		0	CHD6	20	40065872	Intron	DEL	T	TCGA-17-Z030-01A-01W-0746-08	4642947	40065872	22959648	1314	68169											
PTPRT	11122	broad.mit.edu	37	chr20	40980621	40980621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatcgtcctaattccacCcatatcacagggtgacaatt	7	12	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40980621	A	A	40980621	1	1	60	0	1	0	0	0	0	0	0	0	12920	638	22	2		2	PTPRT	20	40980621	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	914749	40980621	22044899	1315	68170											
PTPRT	11122	broad.mit.edu	37	chr20	40980818	40980818	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaataggtggtccctgggtaCagacccacaaagaggtggtg	15	8	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40980818	G	G	40980818	2	3	60	1	0	0	0	0	0	0	0	1	12920	465	17	4		4	PTPRT	20	40980818	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	197	40980818	22044702	1316	68171											
PTPRT	11122	broad.mit.edu	37	chr20	41324902	41324902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttctctcctcctgtcccCcttcctcctccctcttctct	1	21	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41324902	A	A	41324902	1	1	60	0	1	0	0	0	0	0	0	0	12920	638	22	2		2	PTPRT	20	41324902	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	344084	41324902	21700618	1317	68172											
PIGT	51604	broad.mit.edu	37	chr20	44047451	44047451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgaaagagggagcagaGgtagccccaggacagtgagt	15	7	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44047451	T	T	44047451	1	4	60	0	1	0	0	0	0	0	0	0	11994	1015	35	2		2	PIGT	20	44047451	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2722549	44047451	18978069	1318	68173											
WFDC2	10406	broad.mit.edu	37	chr20	44108746	44108746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctgaggtaagtgaacgGgaaagagaaagtgcattgat	13	3	1	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44108746	T	T	44108746	1	4	60	0	1	0	0	0	0	0	0	0	17479	1247	43	2		2	WFDC2	20	44108746	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	61295	44108746	18916774	1319	68174											
SPINLW1	57119	broad.mit.edu	37	chr20	44171164	44171164	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcctcagttcctcatactCagaaagtaactttgtcttgc	5	12	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44171164	T	T	44171164	1	4	60	0	1	0	0	0	0	0	0	0	15185	841	29	4		4	SPINLW1	20	44171164	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	62418	44171164	18854356	1320	68175											
MMP9	4318	broad.mit.edu	37	chr20	44645080	44645080	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggaaggagccagtttgcCggatacaaactggtattctg	14	7	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44645080	A	A	44645080	1	1	60	0	1	0	0	0	0	0	0	0	9763	667	23	1		1	MMP9	20	44645080	3'UTR	SNP	C	TCGA-17-Z030-01A-01W-0746-08	473916	44645080	18380440	1321	68176											
EYA2	2139	broad.mit.edu	37	chr20	45700708	45700708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactaggaaccagagcttctGcccagctgtcacccttgaag	9	14	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45700708	T	T	45700708	1	4	60	0	1	0	0	0	0	0	0	0	5372	1334	46	3		3	EYA2	20	45700708	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	1055628	45700708	17324812	1322	68177											
DDX27	55661	broad.mit.edu	37	chr20	47852730	47852730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcctcgtggccactgatGtggcagcccgtggacttgac	12	13	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47852730	T	T	47852730	3	4	60	1	0	0	0	0	1	0	0	0	4387	1377	48	3	1614	3	DDX27	20	47852730	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2152022	47852730	15172790	1323	68178											
BCAS1	8537	broad.mit.edu	37	chr20	52612285	52612285	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacacaactttcttatgaaGcatatcttgtccctgttctc	4	11	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52612285	C	C	52612285	1	2	60	0	1	0	0	0	0	0	0	0	1355	986	34	4		4	BCAS1	20	52612285	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4759555	52612285	10413235	1324	68179											
MC3R	4159	broad.mit.edu	37	chr20	54824388	54824388	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgtgaggaaggccctcacCttgatcgtggccatctgggt	13	12	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54824388	T	T	54824388	2	4	60	1	0	0	0	0	0	0	0	1	9458	668	24	4		4	MC3R	20	54824388	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2212103	54824388	8201132	1325	68180											
ZNF831	128611	broad.mit.edu	37	chr20	57768030	57768030	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggaggtgggaatgggcagTggggcagaactgggctttcc	20	6	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57768030	A	A	57768030	3	1	60	1	0	0	0	0	1	0	0	0	18314	1693	59	5	1958	5	ZNF831	20	57768030	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	2943642	57768030	5257490	1326	68181											
SYCP2	10388	broad.mit.edu	37	chr20	58444045	58444045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaattcacattttatcacCtttctcaaacccaaaaacca	0	13	4	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58444045	A	A	58444045	1	1	60	0	1	0	0	0	0	0	0	0	15551	696	24	2		2	SYCP2	20	58444045	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	676015	58444045	4581475	1327	68182											
BAGE2	85319	broad.mit.edu	37	chr21	11028281	11028281	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataaatacagccagctcccaGtttcaaactgccactcctgt	5	14	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11028281	C	C	11028281	1	2	60	0	1	0	0	0	0	0	0	0	1297	1044	36	4		4	BAGE2	21	11028281	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08		11028281	37101614	1328	68183											
BAGE2	85319	broad.mit.edu	37	chr21	11066594	11066594	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggaagccaaggcaggcggAtcacttgagaccaggagttc	15	9	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11066594	T	T	11066594	1	4	60	0	1	0	0	0	0	0	0	0	1297	348	12	5		5	BAGE2	21	11066594	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	38313	11066594	37063301	1329	68184											
RNF160	26046	broad.mit.edu	37	chr21	30329835	30329835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacttaactgttgtagttaCgctatgactagtttgaatac	8	6	0	2	rs148201920	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30329835	A	A	30329835	1	1	60	0	1	0	0	0	0	0	0	0	13566	551	19	3		3	RNF160	21	30329835	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	19263241	30329835	17800060	1330	68185											
GRIK1	2897	broad.mit.edu	37	chr21	30959722	30959722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacacagctgactcccaagCaggctaagagcacatacatc	8	13	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30959722	A	A	30959722	3	1	60	1	0	0	0	0	1	0	0	0	6839	710	25	3	1183	3	GRIK1	21	30959722	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	629887	30959722	17170173	1331	68186											
GRIK1	2897	broad.mit.edu	37	chr21	30959845	30959845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctagggtcatgaagggtttgGagaagtcaatgactttctcc	12	7	3	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30959845	T	T	30959845	3	4	60	1	0	0	0	0	1	0	0	0	6839	1174	41	3	1306	3	GRIK1	21	30959845	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	123	30959845	17170050	1332	68187											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654909	31654909	+	Frame_Shift_Del	DEL	G	-	-													cttgggctgcagctggggctGgggctgacgttggtagtttc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31654909	-	-	31654909	7	5	60	1	0	1	0	1	0	0	0	0	8614	1335	47	0	426	0	KRTAP24-1	21	31654909	Frame_Shift_Del	DEL	G	TCGA-17-Z030-01A-01W-0746-08	695064	31654909	16474986	1333	68188											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31914010	31914010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatccatatccttcacggCatgatgggcggcagcagcca	11	12	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31914010	A	A	31914010	3	1	60	1	0	0	0	0	1	0	0	0	8604	710	25	3	37	3	KRTAP19-6	21	31914010	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	259101	31914010	16215885	1334	68189											
TIAM1	7074	broad.mit.edu	37	chr21	32639193	32639193	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcctccgcgtcttgtgcgaGaggcgcagggagcgggaagt	18	10	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32639193	A	A	32639193	2	1	60	1	0	0	0	0	0	0	0	1	16013	929	33	4		4	TIAM1	21	32639193	Silent	SNP	G	TCGA-17-Z030-01A-01W-0746-08	725183	32639193	15490702	1335	68190											
CLIC6	54102	broad.mit.edu	37	chr21	36080997	36080998	+	Splice_Site	DNP	GG	TT	TT													tccaattttgaacttttcaaGgtatcccaagctggggaccc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36080998	TT	TT	36080997	5	4	60	1	0	0	0	0	0	0	1	0	3562	1014	35	2	1624	2	CLIC6	21	36080997	Splice_Site	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	3441804	36080997	12048898	1336	68191											
RUNX1	861	broad.mit.edu	37	chr21	37080577	37080577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgagtgagat	20	0	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37080577	T	T	37080577	1	4	60	0	1	0	0	0	0	0	0	0	13857	1392	48	3		3	RUNX1	21	37080577	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	999580	37080577	11049318	1337	68192											
SETD4	54093	broad.mit.edu	37	chr21	37423645	37423645	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaacatgaaccagctgctAgccaatgaaatcaaactact	5	11	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37423645	G	G	37423645	1	3	60	0	1	0	0	0	0	0	0	0	14246	435	15	5		5	SETD4	21	37423645	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	343068	37423645	10706250	1338	68193											
C21orf29	54084	broad.mit.edu	37	chr21	46096249	46096249	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtaaattcattatcagaAcagttggctttgatggcctc	8	7	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46096249	G	G	46096249	1	3	60	0	1	0	0	0	0	0	0	0	2146	58	2	5		5	C21orf29	21	46096249	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	8672604	46096249	2033646	1339	68194											
AIFM3	150209	broad.mit.edu	37	chr22	21331142	21331142	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccaccgcccacctgcccActtgccctgacagatgtttg	7	18	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21331142	T	T	21331142	1	4	60	0	1	0	0	0	0	0	0	0	428	174	6	5		5	AIFM3	22	21331142	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08		21331142	29973424	1340	68195											
GGT1	2678	broad.mit.edu	37	chr22	25010973	25010973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtggcataaagggtttgGgtgggcgggcctgcctacct	16	10	0	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25010973	T	T	25010973	1	4	60	0	1	0	0	0	0	0	0	0	6425	1247	43	2		2	GGT1	22	25010973	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	3679831	25010973	26293593	1341	68196											
CRYBB3	1417	broad.mit.edu	37	chr22	25599992	25599992	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctgggaagggccctcAtgtttctgatttgaacaatt	11	9	2	2	rs16979730	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25599992	T	T	25599992	1	4	60	0	1	0	0	0	0	0	0	0	3944	232	8	5		5	CRYBB3	22	25599992	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	589019	25599992	25704574	1342	68197											
HPS4	89781	broad.mit.edu	37	chr22	26854422	26854422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcttacccatcagcaagCtctgaatgcggtcgtaatgt	10	10	3	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26854422	A	A	26854422	3	1	60	1	0	0	0	0	1	0	0	0	7408	797	28	3	303	3	HPS4	22	26854422	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1254430	26854422	24450144	1343	68198											
SMTN	6525	broad.mit.edu	37	chr22	31491117	31491117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaacaaaactgtcagtgcCtcttccctgactgacgctga	7	13	2	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31491117	A	A	31491117	1	1	60	0	1	0	0	0	0	0	0	0	14928	696	24	2		2	SMTN	22	31491117	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4636695	31491117	19813449	1344	68199											
SYN3	8224	broad.mit.edu	37	chr22	32933863	32933863	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacctgccctgtaggttgcTgtgggcagtgaagatgatca	13	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32933863	A	A	32933863	1	1	60	0	1	0	0	0	0	0	0	0	15561	1595	55	5		5	SYN3	22	32933863	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1442746	32933863	18370703	1345	68200											
SYN3	8224	broad.mit.edu	37	chr22	33376546	33376546	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctcattatgaccacataaGatggggaccaagattgcatg	11	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33376546	A	A	33376546	1	1	60	0	1	0	0	0	0	0	0	0	15561	957	33	4		4	SYN3	22	33376546	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	442683	33376546	17928020	1346	68201											
MYH9	4627	broad.mit.edu	37	chr22	36708089	36708089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacctccccgtgagcgctcCtcaccttgccggcatagtgg	11	17	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36708089	A	A	36708089	1	1	60	0	1	0	0	0	0	0	0	0	10136	696	24	2		2	MYH9	22	36708089	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	3331543	36708089	14596477	1347	68202											
CYTH4	27128	broad.mit.edu	37	chr22	37688633	37688633	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtgtggctggagccaagtGatggggaaggccggttgtct	20	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37688633	A	A	37688633	1	1	60	0	1	0	0	0	0	0	0	0	4239	1305	45	4		4	CYTH4	22	37688633	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	980544	37688633	13615933	1348	68203											
MEI1	150365	broad.mit.edu	37	chr22	42159104	42159104	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgggctgaggaaggatgCggccaggcagaatagaagag	18	6	0	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42159104	T	T	42159104	1	4	60	0	1	0	0	0	0	0	0	0	9558	783	27	4		4	MEI1	22	42159104	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4470471	42159104	9145462	1349	68204											
EFCAB6	64800	broad.mit.edu	37	chr22	43926768	43926768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgtgcgccgcattggcCtccagcagtgcacaattttg	11	12	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43926768	A	A	43926768	3	1	60	1	0	0	0	0	1	0	0	0	4979	681	24	2	203	2	EFCAB6	22	43926768	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1767664	43926768	7377798	1350	68205											
GRAMD4	23151	broad.mit.edu	37	chr22	47022737	47022737	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaggttcagaggtcacaAgagagatgacttcctcgatc	10	9	3	4			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47022737	C	C	47022737	3	2	60	1	0	0	0	0	1	0	0	0	6818	72	3	5	43	5	GRAMD4	22	47022737	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	3095969	47022737	4281829	1351	68206											
TBC1D22A	25771	broad.mit.edu	37	chr22	47308179	47308179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaaaattgctactaagtGtaatgttattaatgataggt	8	2	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47308179	T	T	47308179	1	4	60	0	1	0	0	0	0	0	0	0	15730	1392	48	3		3	TBC1D22A	22	47308179	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	285442	47308179	3996387	1352	68207											
TUBGCP6	85378	broad.mit.edu	37	chr22	50656172	50656172	+	Missense_Mutation	SNP	T	A	A													ccgcagagcagcctcaggcgTcctggtagtagttgttgaag							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50656172	A	A	50656172	3	1	60	1	0	0	0	0	1	0	0	0	16896	1667	58	5	10	5	TUBGCP6	22	50656172	Missense_Mutation	SNP	T	TCGA-17-Z030-01A-01W-0746-08	3347993	50656172	648394	1353	68208	313	2									
TUBGCP6	85378	broad.mit.edu	37	chr22	50656174	50656174	+	Silent	SNP	C	T	T													gcagagcagcctcaggcgtcCtggtagtagttgttgaagtt					rs141707083		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50656174	T	T	50656174	2	4	60	1	0	0	0	0	0	0	0	1	16896	680	24	4		4	TUBGCP6	22	50656174	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2	50656174	648392	1354	68209	313	2									
ARSF	416	broad.mit.edu	37	chrX	3030330	3030330	+	Frame_Shift_Del	DEL	C	-	-													gaacaggttacctaccacaaCccccctctgctcttcgatct							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3030330	-	-	3030330	7	5	60	1	0	1	0	1	0	0	0	0	995	506	18	0	1544	0	ARSF	23	3030330	Frame_Shift_Del	DEL	C	TCGA-17-Z030-01A-01W-0746-08		3030330	152240230	1355	68210											
STS	412	broad.mit.edu	37	chrX	7177473	7177473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcttcaattatttctatGggatctctttgaccaatctg	7	9	4	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7177473	T	T	7177473	3	4	60	1	0	0	0	0	1	0	0	0	15450	1348	47	2	499	2	STS	23	7177473	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4147143	7177473	148093087	1356	68211											
PIR	8544	broad.mit.edu	37	chrX	15473961	15473961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttaaatagacacaatagCctggcttacctttattccca	6	10	0	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15473961	A	A	15473961	1	1	60	0	1	0	0	0	0	0	0	0	12039	754	26	3		3	PIR	23	15473961	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	8296488	15473961	139796599	1357	68212											
PHEX	5251	broad.mit.edu	37	chrX	22196457	22196457	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagtatttagcacagtctgAtttcttctggctaagaaaag	8	7	3	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22196457	T	T	22196457	3	4	60	1	0	0	0	0	1	0	0	0	11914	333	12	5	1604	5	PHEX	23	22196457	Missense_Mutation	SNP	A	TCGA-17-Z030-01A-01W-0746-08	6722496	22196457	133074103	1358	68213											
DCAF8L1	139425	broad.mit.edu	37	chrX	27999004	27999004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccagcgagatcggggcaGggcagatgtctctgaggaaa	16	8	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27999004	T	T	27999004	3	4	60	1	0	0	0	0	1	0	0	0	4310	991	35	2	1358	2	DCAF8L1	23	27999004	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5802547	27999004	127271556	1359	68214											
FAM47A	158724	broad.mit.edu	37	chrX	34148422	34148422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccttttcatctagctcCatgctgtacttcagctctga	5	13	5	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34148422	A	A	34148422	3	1	60	1	0	0	0	0	1	0	0	0	5620	594	21	2	405	2	FAM47A	23	34148422	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6149418	34148422	121122138	1360	68215											
CXorf38	159013	broad.mit.edu	37	chrX	40489799	40489799	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcatgatggcctcacatgaGagaatagacatgaaagagat	10	6	2	6			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40489799	A	A	40489799	1	1	60	0	1	0	0	0	0	0	0	0	4140	957	33	4		4	CXorf38	23	40489799	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6341377	40489799	114780761	1361	68216											
CASK	8573	broad.mit.edu	37	chrX	41495961	41495961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatataaccgtttaaaaaagTgcagaagcttaatctaaaac	5	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41495961	A	A	41495961	1	1	60	0	1	0	0	0	0	0	0	0	2691	1711	59	5		5	CASK	23	41495961	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	1006162	41495961	113774599	1362	68217											
WDR45	11152	broad.mit.edu	37	chrX	48934035	48934035	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttcctcatctctgccccTctgccccatccactgtttca	3	19	5	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48934035	C	C	48934035	1	2	60	0	1	0	0	0	0	0	0	0	17424	1566	54	5		5	WDR45	23	48934035	Intron	SNP	T	TCGA-17-Z030-01A-01W-0746-08	7438074	48934035	106336525	1363	68218											
GAGE10	643832	broad.mit.edu	37	chrX	49157763	49157763	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaactgtagtatgctttacaTgcctttagaatcatataaat	5	6	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49157763	A	A	49157763	1	1	60	0	1	0	0	0	0	0	0	0	6247	1479	51	5		5	GAGE10	23	49157763	5'Flank	SNP	T	TCGA-17-Z030-01A-01W-0746-08	223728	49157763	106112797	1364	68219											
MAGEE2	139599	broad.mit.edu	37	chrX	75003400	75003400	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctccctatattgttctGgccagttctgtggtcgcttt	9	12	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75003400	A	A	75003400	3	1	60	1	0	0	0	0	1	0	0	0	9278	1348	47	4	88	4	MAGEE2	23	75003400	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	25845637	75003400	80267160	1365	68220											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912645	77912645	+	Missense_Mutation	SNP	C	T	T													gatgtgtgggcagttgattgCagcctgcataggttggtttt							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77912645	T	T	77912645	3	4	60	1	0	0	0	0	1	0	0	0	17717	710	25	4	158	4	ZCCHC5	23	77912645	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2909245	77912645	77357915	1366	68221	314	2									
ZCCHC5	203430	broad.mit.edu	37	chrX	77912649	77912649	+	Silent	SNP	C	T	T													tgtgggcagttgattgcagcCtgcataggttggttttcagc							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77912649	T	T	77912649	2	4	60	1	0	0	0	0	0	0	0	1	17717	680	24	4		4	ZCCHC5	23	77912649	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08	4	77912649	77357911	1367	68222	314	2									
ITM2A	9452	broad.mit.edu	37	chrX	78618573	78618573	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagttaggctctcctcCacgaagggaatttgcaggat	12	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78618573	A	A	78618573	4	1	60	1	0	0	0	0	0	1	0	0	7982	603	21	2	500	2	ITM2A	23	78618573	Nonsense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	705924	78618573	76651987	1368	68223											
POF1B	79983	broad.mit.edu	37	chrX	84606440	84606440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaaatggcttcctcttagGaattgagacagtggttccta	10	7	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84606440	T	T	84606440	3	4	60	1	0	0	0	0	1	0	0	0	12277	1165	41	3	1365	3	POF1B	23	84606440	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5987867	84606440	70664120	1369	68224											
PCDH11X	27328	broad.mit.edu	37	chrX	91132885	91132885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagataacggggtaccacCcttaaccagcaatgtcacag	8	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91132885	A	A	91132885	3	1	60	1	0	0	0	0	1	0	0	0	11602	623	22	2	1652	2	PCDH11X	23	91132885	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6526445	91132885	64137675	1370	68225											
PCDH11X	27328	broad.mit.edu	37	chrX	91369420	91369420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgggctccatcccatcgGggccattgtctctggatcag	11	14	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91369420	T	T	91369420	1	4	60	0	1	0	0	0	0	0	0	0	11602	1247	43	2		2	PCDH11X	23	91369420	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	236535	91369420	63901140	1371	68226											
NAP1L3	4675	broad.mit.edu	37	chrX	92927566	92927566	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaggatcttcttttacttcAggggttgcctccatacagtc	8	10	3	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92927566	T	T	92927566	2	4	60	1	0	0	0	0	0	0	0	1	10252	175	7	5		5	NAP1L3	23	92927566	Silent	SNP	A	TCGA-17-Z030-01A-01W-0746-08	1558146	92927566	62342994	1372	68227											
XKRX	402415	broad.mit.edu	37	chrX	100182927	100182927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtctggggtggggttagGggggtaaggaaaagatttaa	18	2	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100182927	T	T	100182927	1	4	60	0	1	0	0	0	0	0	0	0	17566	1247	43	2		2	XKRX	23	100182927	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7255361	100182927	55087633	1373	68228											
DRP2	1821	broad.mit.edu	37	chrX	100497571	100497571	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcatgggaaaagaggagtgGagaatgtggagctagggaat	18	2	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100497571	C	C	100497571	1	2	60	0	1	0	0	0	0	0	0	0	4804	1189	41	4		4	DRP2	23	100497571	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	314644	100497571	54772989	1374	68229											
NXF5	55998	broad.mit.edu	37	chrX	101090890	101090890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttggggtccctgacttcCtgcaatatcagatagttatt	8	9	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101090890	A	A	101090890	1	1	60	0	1	0	0	0	0	0	0	0	10881	696	24	2		2	NXF5	23	101090890	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	593319	101090890	54179670	1375	68230											
MUM1L1	139221	broad.mit.edu	37	chrX	105449921	105449921	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagtgatgattccctgtatGatgataaatcacaagcaccc	8	9	1	5			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105449921	T	T	105449921	3	4	60	1	0	0	0	0	1	0	0	0	10080	1290	45	3	498	3	MUM1L1	23	105449921	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	4359031	105449921	49820639	1376	68231											
AMOT	154796	broad.mit.edu	37	chrX	112025684	112025684	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagcggggaggctgcatgatCagatttcctagctgtgaata	14	7	1	3			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112025684	A	A	112025684	1	1	60	0	1	0	0	0	0	0	0	0	582	841	29	3		3	AMOT	23	112025684	Intron	SNP	C	TCGA-17-Z030-01A-01W-0746-08	6575763	112025684	43244876	1377	68232											
LONRF3	79836	broad.mit.edu	37	chrX	118112440	118112440	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaggtgagtgtgggatGgaagaggtgggaaggggttg	21	0	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118112440	C	C	118112440	1	2	60	0	1	0	0	0	0	0	0	0	8983	1363	47	4		4	LONRF3	23	118112440	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	6086756	118112440	37158120	1378	68233											
ODZ1	10178	broad.mit.edu	37	chrX	123554179	123554179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcataaacggttgtccatCcattttcgttacttttggta	6	9	1	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123554179	A	A	123554179	3	1	60	1	0	0	0	0	1	0	0	0	10929	855	30	3	3266	3	ODZ1	23	123554179	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	5441739	123554179	31716381	1379	68234											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299581	125299581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgccgcacaccacctgCctggcgttcagccactgtga	11	15	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299581	A	A	125299581	3	1	60	1	0	0	0	0	1	0	0	0	4298	738	26	3	1068	3	DCAF12L2	23	125299581	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	1745402	125299581	29970979	1380	68235											
IGSF1	3547	broad.mit.edu	37	chrX	130410807	130410807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgctgtcctaagcacGttctcagtgtgttttagaag	10	11	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130410807	T	T	130410807	1	4	60	0	1	0	0	0	0	0	0	0	7666	1160	40	3		3	IGSF1	23	130410807	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	5111226	130410807	24859753	1381	68236											
GPC4	2239	broad.mit.edu	37	chrX	132437212	132437212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgatatcaaagaagtccaCgtcgttcccattgtatgcat	7	10	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132437212	A	A	132437212	3	1	60	1	0	0	0	0	1	0	0	0	6665	536	19	3	228	3	GPC4	23	132437212	Missense_Mutation	SNP	C	TCGA-17-Z030-01A-01W-0746-08	2026405	132437212	22833348	1382	68237											
SAGE1	55511	broad.mit.edu	37	chrX	134991015	134991015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttgacctctccctttgGtttccagatgctaccattac	6	14	1	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134991015	T	T	134991015	1	4	60	0	1	0	0	0	0	0	0	0	13920	1276	44	3		3	SAGE1	23	134991015	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2553803	134991015	20279545	1383	68238											
FGF13	2258	broad.mit.edu	37	chrX	137793049	137793049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacatttaacttgtttttGtcgcagctggtcttgccttt	8	8	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137793049	T	T	137793049	3	4	60	1	0	0	0	0	1	0	0	0	5899	1368	48	3	640	3	FGF13	23	137793049	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2802034	137793049	17477511	1384	68239											
SPANXE	171489	broad.mit.edu	37	chrX	140785893	140785894	+	Intron	DNP	GG	AT	AT													gacattattttgggtgaacaGgatagagactggatagcaag							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	140785894	AT	AT	140785893	1	1	60	0	1	0	0	0	0	0	0	0	15105	1015	35	4		4	SPANXE	23	140785893	Intron	DNP	GG	TCGA-17-Z030-01A-01W-0746-08	2992844	140785893	14484667	1385	68240											
AFF2	2334	broad.mit.edu	37	chrX	147925103	147925103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtagtttggttggggtgGggggagaatcaaatttccca	15	4	1	1			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147925103	T	T	147925103	1	4	60	0	1	0	0	0	0	0	0	0	357	1247	43	2		2	AFF2	23	147925103	Intron	SNP	G	TCGA-17-Z030-01A-01W-0746-08	7139210	147925103	7345457	1386	68241											
VAMP7	6845	broad.mit.edu	37	chrX	155119300	155119300	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttctgttctgcatgtggtaAgggatgaaagaagggaattc	14	4	2	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155119300	T	T	155119300	1	4	60	0	1	0	0	0	0	0	0	0	17244	87	3	5		5	VAMP7	23	155119300	Intron	SNP	A	TCGA-17-Z030-01A-01W-0746-08	7194197	155119300	151260	1387	68242											
VAMP7	6845	broad.mit.edu	37	chrX	155138279	155138280	+	Intron	INS	-	TTTG	TTTG													ttttcttttcttgtgatgtcINStttggttttgataccagggt							TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTTG	155138280	TTTG	TTTG	155138279	6	5	60	0	1	1	1	0	0	0	0	0	17244	928	32	0		0	VAMP7	23	155138279	Intron	INS	-	TCGA-17-Z030-01A-01W-0746-08	18979	155138279	132281	1388	68243											
TGIF2LY	90655	broad.mit.edu	37	chrY	3447687	3447687	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagatgcccatgccacccaCctgcagagcaccgaggcgtc	10	16	0	2			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3447687	T	T	3447687	2	4	60	1	0	0	0	0	0	0	0	1	15951	506	18	4		4	TGIF2LY	24	3447687	Silent	SNP	C	TCGA-17-Z030-01A-01W-0746-08		3447687	55925879	1389	68244											
PCDH11Y	83259	broad.mit.edu	37	chrY	5605585	5605585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcccaccaccgatacagGtgtctgctctccaccacagt	7	17	2	0			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5605585	T	T	5605585	3	4	60	1	0	0	0	0	1	0	0	0	11603	1261	44	3	3701	3	PCDH11Y	24	5605585	Missense_Mutation	SNP	G	TCGA-17-Z030-01A-01W-0746-08	2157898	5605585	53767981	1390	68245											
NOC2L	26155	broad.mit.edu	37	chr1	892253	892253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctgggcacccagctgcCcgcccctggctgctgctcac	11	20	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	892253	A	A	892253	1	1	61	0	1	0	0	0	0	0	0	0	10608	638	22	2		2	NOC2L	1	892253	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08		892253	248358368	1	68246											
TNFRSF4	7293	broad.mit.edu	37	chr1	1147505	1147505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctgcagggtgtgcttccCagccaaggtgcagctgttgg	16	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1147505	A	A	1147505	3	1	61	1	0	0	0	0	1	0	0	0	16420	594	21	2	394	2	TNFRSF4	1	1147505	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	255252	1147505	248103116	2	68247											
CDK11A	728642	broad.mit.edu	37	chr1	1636273	1636273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgtaggaagcacccggcCccaggacagcacggggccct	15	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1636273	A	A	1636273	3	1	61	1	0	0	0	0	1	0	0	0	3156	638	22	2		2	CDK11A	1	1636273	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	488768	1636273	247614348	3	68248											
KIAA1751	85452	broad.mit.edu	37	chr1	1918342	1918342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccggccctgacctcatgCccggttccctgccccctggc	9	22	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1918342	A	A	1918342	1	1	61	0	1	0	0	0	0	0	0	0	8326	754	26	3		3	KIAA1751	1	1918342	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	282069	1918342	247332279	4	68249											
KIAA1751	85452	broad.mit.edu	37	chr1	1920039	1920039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaaatgcctgcgttctgtCctcagctgttttcttcttca	8	11	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1920039	A	A	1920039	3	1	61	1	0	0	0	0	1	0	0	0	8326	855	30	3	2140	3	KIAA1751	1	1920039	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1697	1920039	247330582	5	68250											
KIAA1751	85452	broad.mit.edu	37	chr1	1920383	1920383	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtagaagacatttgatgtCaaactccggatcctctaatt	7	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1920383	A	A	1920383	3	1	61	1	0	0	0	0	1	0	0	0	8326	826	29	3	2255	3	KIAA1751	1	1920383	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	344	1920383	247330238	6	68251											
MMEL1	79258	broad.mit.edu	37	chr1	2527977	2527977	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaaggctggccccgcgtgGgccatggatgaggggcgccc	19	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2527977	C	C	2527977	1	2	61	0	1	0	0	0	0	0	0	0	9739	1247	43	4		4	MMEL1	1	2527977	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	607594	2527977	246722644	7	68252											
AJAP1	55966	broad.mit.edu	37	chr1	4832306	4832306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgggtttccggcctctgCccgtccccctaccccaaact	8	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4832306	A	A	4832306	1	1	61	0	1	0	0	0	0	0	0	0	438	754	26	3		3	AJAP1	1	4832306	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2304329	4832306	244418315	8	68253											
NPHP4	261734	broad.mit.edu	37	chr1	5934991	5934991	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgtgttgtgggggttcTtaagcacaaactcaaagaac	12	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5934991	G	G	5934991	3	3	61	1	0	0	0	0	1	0	0	0	10676	1609	56	5	1333	5	NPHP4	1	5934991	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1102685	5934991	243315630	9	68254											
CHD5	26038	broad.mit.edu	37	chr1	6190453	6190454	+	Intron	DNP	TG	AT	AT													ccttgggtgggcagaaaggaTgggggagagaacagagagaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	6190454	AT	AT	6190453	1	1	61	0	1	0	0	0	0	0	0	0	3359	1479	51	5		5	CHD5	1	6190453	Intron	DNP	TG	TCGA-17-Z031-01A-01W-0746-08	255462	6190453	243060168	10	68255											
CHD5	26038	broad.mit.edu	37	chr1	6212594	6212594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttcttcctcactccagGccctgaaaaacagcagtgat	7	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6212594	T	T	6212594	3	4	61	1	0	0	0	0	1	0	0	0	3359	1203	42	3	5260	3	CHD5	1	6212594	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22141	6212594	243038027	11	68256											
KLHL21	9903	broad.mit.edu	37	chr1	6659460	6659460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctccgcccactcattcacGcttgagttgtacctccacac	5	18	2	1	rs143989562		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6659460	T	T	6659460	3	4	61	1	0	0	0	0	1	0	0	0	8447	1078	38	3	731	3	KLHL21	1	6659460	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	446866	6659460	242591161	12	68257											
UTS2	10911	broad.mit.edu	37	chr1	7907835	7907835	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatttcacttcagacacaGtatttccagaagcaatcagg	6	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7907835	T	T	7907835	4	4	61	1	0	0	0	0	0	1	0	0	17231	1024	36	3	12	3	UTS2	1	7907835	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1248375	7907835	241342786	13	68258											
TNFRSF9	3604	broad.mit.edu	37	chr1	7981040	7981040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatttgaatcatttaacaCttattttccataaattatag	2	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7981040	A	A	7981040	1	1	61	0	1	0	0	0	0	0	0	0	16423	580	20	3		3	TNFRSF9	1	7981040	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	73205	7981040	241269581	14	68259											
TNFRSF9	3604	broad.mit.edu	37	chr1	7998852	7998852	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactatttggaggacagggaCtgcaaatctgattcctgtta	10	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7998852	T	T	7998852	3	4	61	1	0	0	0	0	1	0	0	0	16423	565	20	4	654	4	TNFRSF9	1	7998852	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17812	7998852	241251769	15	68260											
RERE	473	broad.mit.edu	37	chr1	8425950	8425950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatcctcctgaacacggCctgcctgcggtgcctacgat	9	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8425950	A	A	8425950	3	1	61	1	0	0	0	0	1	0	0	0	13339	739	26	3	3375	3	RERE	1	8425950	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	427098	8425950	240824671	16	68261											
RERE	473	broad.mit.edu	37	chr1	8569474	8569497	+	Intron	DEL	TCCATCCATCCATCCATCCATCCG	-	-													ctgagccatccatccatccaTccatccatccatccatccat					rs140535131		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8569497	-	-	8569474	6	5	61	0	1	1	0	1	0	0	0	0	13339	1450	50	0		0	RERE	1	8569474	Intron	DEL	TCCATCCATCCATCCATCCATCCG	TCGA-17-Z031-01A-01W-0746-08	143524	8569474	240681147	17	68262											
ENO1	2023	broad.mit.edu	37	chr1	8926469	8926469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaatgcgcatggcttccCtgaagtttgctgcaccgact	9	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8926469	A	A	8926469	3	1	61	1	0	0	0	0	1	0	0	0	5163	681	24	2	792	2	ENO1	1	8926469	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	356995	8926469	240324152	18	68263											
SLC2A7	155184	broad.mit.edu	37	chr1	9085118	9085118	+	Missense_Mutation	SNP	G	C	C													gctcagtgtcgccagcaacaGcgtcggctggagccgctgta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9085118	C	C	9085118	3	2	61	1	0	0	0	0	1	0	0	0	14664	962	34	4	1515	4	SLC2A7	1	9085118	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	158649	9085118	240165503	19	68264	315	2									
SLC2A7	155184	broad.mit.edu	37	chr1	9085120	9085120	+	Missense_Mutation	SNP	G	T	T													tcagtgtcgccagcaacagcGtcggctggagccgctgtagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9085120	T	T	9085120	3	4	61	1	0	0	0	0	1	0	0	0	14664	1145	40	3	1517	3	SLC2A7	1	9085120	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2	9085120	240165501	20	68265	315	2									
SLC2A5	6518	broad.mit.edu	37	chr1	9097801	9097801	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagatgtagatggtggtgagGaggcagatcacggcgaagac	17	5	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9097801	T	T	9097801	2	4	61	1	0	0	0	0	0	0	0	1	14662	1161	41	3		3	SLC2A5	1	9097801	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12681	9097801	240152820	21	68266											
SLC2A5	6518	broad.mit.edu	37	chr1	9117522	9117522	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttacctgccaaatttattcAccaaggggccgaccaggagg	10	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9117522	T	T	9117522	3	4	61	1	0	0	0	0	1	0	0	0	14662	159	6	5	1431	5	SLC2A5	1	9117522	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19721	9117522	240133099	22	68267											
H6PD	9563	broad.mit.edu	37	chr1	9305652	9305652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggagcctgccagggctaGggtgagctgggcgctggtag	19	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9305652	T	T	9305652	1	4	61	0	1	0	0	0	0	0	0	0	7002	1015	35	2		2	H6PD	1	9305652	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	188130	9305652	239944969	23	68268											
UBE4B	10277	broad.mit.edu	37	chr1	10119482	10119482	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataattccccagatccaggaGgggaaacaggtgttggttga	13	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10119482	A	A	10119482	1	1	61	0	1	0	0	0	0	0	0	0	17009	1015	35	4		4	UBE4B	1	10119482	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	813830	10119482	239131139	24	68269											
PGD	5226	broad.mit.edu	37	chr1	10473253	10473253	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgcggggcagaagggcacAgggaagtggaccgccatctc	17	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10473253	T	T	10473253	2	4	61	1	0	0	0	0	0	0	0	1	11882	175	7	5		5	PGD	1	10473253	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	353771	10473253	238777368	25	68270											
PGD	5226	broad.mit.edu	37	chr1	10479637	10479637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacctggctggcccctcgGgggcgtgcgccatggactgt	15	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10479637	T	T	10479637	1	4	61	0	1	0	0	0	0	0	0	0	11882	1247	43	2		2	PGD	1	10479637	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6384	10479637	238770984	26	68271											
CORT	1325	broad.mit.edu	37	chr1	10510335	10510335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccggggccacggccaccGctgccctgcccctggagggt	14	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10510335	T	T	10510335	3	4	61	1	0	0	0	0	1	0	0	0	3792	1087	38	3	207	3	CORT	1	10510335	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30698	10510335	238740286	27	68272											
PEX14	5195	broad.mit.edu	37	chr1	10617892	10617892	+	Intron	DEL	T	-	-													catagaactatttgcctaccTttttttttttttttaatgat					rs113068415		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10617892	-	-	10617892	6	5	61	0	1	1	0	1	0	0	0	0	11837	1624	56	0		0	PEX14	1	10617892	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	107557	10617892	238632729	28	68273											
CASZ1	54897	broad.mit.edu	37	chr1	10720693	10720693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagagggagggggtcagtGtggggaggggcggagcagga	24	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10720693	T	T	10720693	1	4	61	0	1	0	0	0	0	0	0	0	2711	1392	48	3		3	CASZ1	1	10720693	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	102801	10720693	238529928	29	68274											
PTCHD2	57540	broad.mit.edu	37	chr1	11583992	11583992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttgacatggcgctggGgggcaggtctgttccaggag	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11583992	T	T	11583992	1	4	61	0	1	0	0	0	0	0	0	0	12839	1247	43	2		2	PTCHD2	1	11583992	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	863299	11583992	237666629	30	68275											
PTCHD2	57540	broad.mit.edu	37	chr1	11586667	11586667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggccgaggcagcccCcccgagtcatgtgtcttgtc	13	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11586667	A	A	11586667	1	1	61	0	1	0	0	0	0	0	0	0	12839	638	22	2		2	PTCHD2	1	11586667	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2675	11586667	237663954	31	68276											
CLCN6	1185	broad.mit.edu	37	chr1	11898367	11898367	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccactgctgcctgagcacgGacagtgtctgggttggaatt	14	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11898367	T	T	11898367	1	4	61	0	1	0	0	0	0	0	0	0	3498	1189	41	3		3	CLCN6	1	11898367	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	311700	11898367	237352254	32	68277											
TNFRSF8	943	broad.mit.edu	37	chr1	12170100	12170100	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcttcttccccagtgGcaccatcccccaggccaagc	8	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12170100	T	T	12170100	3	4	61	1	0	0	0	0	1	0	0	0	16422	1203	42	3	537	3	TNFRSF8	1	12170100	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	271733	12170100	237080521	33	68278											
VPS13D	55187	broad.mit.edu	37	chr1	12302700	12302700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcttaaattgtttgagaGgtgaaaactgagagccctgg	13	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12302700	T	T	12302700	1	4	61	0	1	0	0	0	0	0	0	0	17319	1015	35	2		2	VPS13D	1	12302700	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132600	12302700	236947921	34	68279											
DHRS3	9249	broad.mit.edu	37	chr1	12632723	12632723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcacatgcgtactttccCctgacccagagtgttctttc	7	13	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12632723	A	A	12632723	1	1	61	0	1	0	0	0	0	0	0	0	4531	638	22	2		2	DHRS3	1	12632723	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	330023	12632723	236617898	35	68280											
C1orf158	93190	broad.mit.edu	37	chr1	12806518	12806518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgagagaggttggagagagGgctcagagggactgatgggg	21	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12806518	A	A	12806518	1	1	61	0	1	0	0	0	0	0	0	0	2027	1247	43	4		4	C1orf158	1	12806518	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	173795	12806518	236444103	36	68281											
C1orf158	93190	broad.mit.edu	37	chr1	12819346	12819346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcatggttacaacccggGgctgcctccactccgcactt	10	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12819346	T	T	12819346	3	4	61	1	0	0	0	0	1	0	0	0	2027	1232	43	2	339	2	C1orf158	1	12819346	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12828	12819346	236431275	37	68282											
C1orf158	93190	broad.mit.edu	37	chr1	12819516	12819516	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagaaggagccacacagGtgaccctggctccaggagag	14	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12819516	T	T	12819516	1	4	61	0	1	0	0	0	0	0	0	0	2027	1276	44	3		3	C1orf158	1	12819516	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	170	12819516	236431105	38	68283											
PRAMEF12	390999	broad.mit.edu	37	chr1	12837073	12837073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagataagcagaacagCcttgggttgtgaaaagtgtc	11	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12837073	A	A	12837073	1	1	61	0	1	0	0	0	0	0	0	0	12529	754	26	3		3	PRAMEF12	1	12837073	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17557	12837073	236413548	39	68284											
PDPN	10630	broad.mit.edu	37	chr1	13937031	13937031	+	Intron	DEL	C	-	-													ggtaagaaaaccagccacctCcatgggggctgatctacttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13937031	-	-	13937031	6	5	61	0	1	1	0	1	0	0	0	0	11782	870	30	0		0	PDPN	1	13937031	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	1099958	13937031	235313590	40	68285											
TMEM51	55092	broad.mit.edu	37	chr1	15494965	15494965	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcaattagctgtaactcaGaatgtataagttccaatttt	6	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15494965	T	T	15494965	1	4	61	0	1	0	0	0	0	0	0	0	16300	957	33	3		3	TMEM51	1	15494965	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1557934	15494965	233755656	41	68286											
TMEM51	55092	broad.mit.edu	37	chr1	15519468	15519468	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtgcatgtgctggattgaGagccacttttgtccccctgg	12	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15519468	A	A	15519468	1	1	61	0	1	0	0	0	0	0	0	0	16300	957	33	4		4	TMEM51	1	15519468	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	24503	15519468	233731153	42	68287											
DNAJC16	23341	broad.mit.edu	37	chr1	15874838	15874838	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgagagggacggaagagaTgacaaggcggtacaacatca	14	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15874838	A	A	15874838	3	1	61	1	0	0	0	0	1	0	0	0	4675	1464	51	5	960	5	DNAJC16	1	15874838	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	355370	15874838	233375783	43	68288											
DDI2	84301	broad.mit.edu	37	chr1	15970134	15970134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccagaagattattggaaGggtacatctaggtgagcaaa	11	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15970134	T	T	15970134	3	4	61	1	0	0	0	0	1	0	0	0	4362	1000	35	2	900	2	DDI2	1	15970134	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	95296	15970134	233280487	44	68289											
C1orf64	149563	broad.mit.edu	37	chr1	16332318	16332318	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgaggctgcagtgagccAtgacctccagcctgggcgac	15	13	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16332318	G	G	16332318	1	3	61	0	1	0	0	0	0	0	0	0	2076	232	8	5		5	C1orf64	1	16332318	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	362184	16332318	232918303	45	68290											
ARHGEF19	128272	broad.mit.edu	37	chr1	16528824	16528843	+	Intron	DEL	CCATGGGGACGGGGTGCCCA	-	-													ggatgtcccaggggtgcccgCcatggggacggggtgcccat					rs147970267	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16528843	-	-	16528824	6	5	61	0	1	1	0	1	0	0	0	0	904	754	26	0		0	ARHGEF19	1	16528824	Intron	DEL	CCATGGGGACGGGGTGCCCA	TCGA-17-Z031-01A-01W-0746-08	196506	16528824	232721797	46	68291											
C1orf144	26099	broad.mit.edu	37	chr1	16721475	16721475	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaataaaaaataaagaaatGatgggggacatctattatat	7	2	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16721475	A	A	16721475	1	1	61	0	1	0	0	0	0	0	0	0	2022	1305	45	4		4	C1orf144	1	16721475	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	192651	16721475	232529146	47	68292											
NBPF1	55672	broad.mit.edu	37	chr1	16891786	16891786	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agattgttcatggttgtgagGactttagacactgaaattag	11	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16891786	T	T	16891786	1	4	61	0	1	0	0	0	0	0	0	0	10286	1189	41	3		3	NBPF1	1	16891786	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	170311	16891786	232358835	48	68293											
NBPF1	55672	broad.mit.edu	37	chr1	16918083	16918083	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctcttggagaaaacaggtCgttctgtgtctgtgttagaa	12	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16918083	T	T	16918083	1	4	61	0	1	0	0	0	0	0	0	0	10286	899	31	4		4	NBPF1	1	16918083	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26297	16918083	232332538	49	68294											
NBPF1	55672	broad.mit.edu	37	chr1	16924000	16924000	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacgcttgccagcccatgctCttctaaggctggagcaaact	9	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16924000	A	A	16924000	1	1	61	0	1	0	0	0	0	0	0	0	10286	928	32	3		3	NBPF1	1	16924000	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5917	16924000	232326621	50	68295											
CROCC	9696	broad.mit.edu	37	chr1	17266478	17266478	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagcgagcggcgggccctAgaggaacagctgcagcgcct	17	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17266478	T	T	17266478	2	4	61	1	0	0	0	0	0	0	0	1	3925	407	15	5		5	CROCC	1	17266478	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	342478	17266478	231984143	51	68296											
ATP13A2	23400	broad.mit.edu	37	chr1	17331103	17331103	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacagaactaaaaggtggtGggagaacatgaagtctgact	12	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17331103	A	A	17331103	1	1	61	0	1	0	0	0	0	0	0	0	1128	1363	47	4		4	ATP13A2	1	17331103	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	64625	17331103	231919518	52	68297											
PADI1	29943	broad.mit.edu	37	chr1	17555386	17555386	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggctgggggctggggggGcttgaggcaggctaggggtc	24	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17555386	C	C	17555386	1	2	61	0	1	0	0	0	0	0	0	0	11471	1218	42	4		4	PADI1	1	17555386	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	224283	17555386	231695235	53	68298											
PADI3	51702	broad.mit.edu	37	chr1	17601181	17601181	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgcgacaggtctgtgagtGgcctggactcctttgggaac	14	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17601181	T	T	17601181	3	4	61	1	0	0	0	0	1	0	0	0	11473	1348	47	2	1249	2	PADI3	1	17601181	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45795	17601181	231649440	54	68299											
PADI4	23569	broad.mit.edu	37	chr1	17680942	17680942	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgagttacttcctgtgccCaagttcatctctaaacttgg	7	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17680942	A	A	17680942	1	1	61	0	1	0	0	0	0	0	0	0	11474	609	21	2		2	PADI4	1	17680942	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79761	17680942	231569679	55	68300											
PADI4	23569	broad.mit.edu	37	chr1	17682564	17682564	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagctctattctgactGgctgtccgtgggccacgtgg	14	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17682564	A	A	17682564	4	1	61	1	0	0	0	0	0	1	0	0	11474	1357	47	4	1443	4	PADI4	1	17682564	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1622	17682564	231568057	56	68301											
PADI4	23569	broad.mit.edu	37	chr1	17690003	17690003	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctgtgacctgaacccTcacttccctgcaggtgaaca	9	15	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17690003	C	C	17690003	1	2	61	0	1	0	0	0	0	0	0	0	11474	1566	54	5		5	PADI4	1	17690003	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	7439	17690003	231560618	57	68302											
IGSF21	84966	broad.mit.edu	37	chr1	18550288	18550288	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggagtgagagtgctgggAaaactaagtgacacatgctc	14	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18550288	G	G	18550288	1	3	61	0	1	0	0	0	0	0	0	0	7669	261	9	5		5	IGSF21	1	18550288	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	860285	18550288	230700333	58	68303											
IGSF21	84966	broad.mit.edu	37	chr1	18554472	18554472	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagtgtaacttcaagacaGatgggcgcatgcgggagatc	14	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18554472	A	A	18554472	3	1	61	1	0	0	0	0	1	0	0	0	7669	942	33	4	157	4	IGSF21	1	18554472	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4184	18554472	230696149	59	68304											
IGSF21	84966	broad.mit.edu	37	chr1	18661368	18661368	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatgaagggccctcaccctGtcttctgcctcccccaggct	9	18	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18661368	A	A	18661368	1	1	61	0	1	0	0	0	0	0	0	0	7669	1392	48	4		4	IGSF21	1	18661368	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	106896	18661368	230589253	60	68305											
IGSF21	84966	broad.mit.edu	37	chr1	18688691	18688691	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccagaacttcacgctggtCtgcatcgtgtctggaggaaa	12	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18688691	A	A	18688691	2	1	61	1	0	0	0	0	0	0	0	1	7669	900	32	3		3	IGSF21	1	18688691	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	27323	18688691	230561930	61	68306											
TAS1R2	80834	broad.mit.edu	37	chr1	19166621	19166621	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagctgtaggcgcgtgggaaGcggctggccatcttgaaggc	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19166621	C	C	19166621	2	2	61	1	0	0	0	0	0	0	0	1	15682	958	34	4		4	TAS1R2	1	19166621	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	477930	19166621	230084000	62	68307											
TAS1R2	80834	broad.mit.edu	37	chr1	19168216	19168216	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggagtgctaggcctgtgaAtcataccttcagtgtggttg	13	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19168216	G	G	19168216	1	3	61	0	1	0	0	0	0	0	0	0	15682	116	4	5		5	TAS1R2	1	19168216	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1595	19168216	230082405	63	68308											
UBR4	23352	broad.mit.edu	37	chr1	19442079	19442079	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggcaggtcaatcttcacctCtgtctgtccaggggtcagct	11	13	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19442079	T	T	19442079	3	4	61	1	0	0	0	0	1	0	0	0	17030	922	32	4	4807	4	UBR4	1	19442079	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	273863	19442079	229808542	64	68309											
MRTO4	51154	broad.mit.edu	37	chr1	19582447	19582447	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaattgtcccacagcttcgGaaatgtgtggacacctacaa	9	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19582447	T	T	19582447	2	4	61	1	0	0	0	0	0	0	0	1	9946	1161	41	3		3	MRTO4	1	19582447	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	140368	19582447	229668174	65	68310											
AKR7L	246181	broad.mit.edu	37	chr1	19597088	19597088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagaacatagtgcagccCagaccaggaaagggaggtca	13	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19597088	A	A	19597088	1	1	61	0	1	0	0	0	0	0	0	0	477	609	21	2		2	AKR7L	1	19597088	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14641	19597088	229653533	66	68311											
PQLC2	54896	broad.mit.edu	37	chr1	19644518	19644518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagacctagtgctgggcaGtgctgatacagagatcatca	12	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19644518	T	T	19644518	1	4	61	0	1	0	0	0	0	0	0	0	12520	1044	36	3		3	PQLC2	1	19644518	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47430	19644518	229606103	67	68312											
PLA2G2A	5320	broad.mit.edu	37	chr1	20303491	20303491	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcgctcagttccccttctCcctctctgtccatcccttct	3	20	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20303491	A	A	20303491	1	1	61	0	1	0	0	0	0	0	0	0	12090	870	30	3		3	PLA2G2A	1	20303491	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	658973	20303491	228947130	68	68313											
PLA2G2D	26279	broad.mit.edu	37	chr1	20441963	20441963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccagatctcccttcctgGggtctccagctcctgccctg	11	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20441963	T	T	20441963	1	4	61	0	1	0	0	0	0	0	0	0	12092	1247	43	2		2	PLA2G2D	1	20441963	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	138472	20441963	228808658	69	68314											
DDOST	1650	broad.mit.edu	37	chr1	20979549	20979549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctgcacttaattcccaCccgacgaacatggcaggaat	9	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20979549	A	A	20979549	1	1	61	0	1	0	0	0	0	0	0	0	4368	522	18	3		3	DDOST	1	20979549	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	537586	20979549	228271072	70	68315											
KIF17	57576	broad.mit.edu	37	chr1	21013867	21013867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcacatggcaccatgcGtgacatcagctacctgcaca	9	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21013867	T	T	21013867	1	4	61	0	1	0	0	0	0	0	0	0	8349	1160	40	3		3	KIF17	1	21013867	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34318	21013867	228236754	71	68316											
KIF17	57576	broad.mit.edu	37	chr1	21039944	21039944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacaatgggtctgcaccCacctccagcttctgcttggt	9	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21039944	T	T	21039944	1	4	61	0	1	0	0	0	0	0	0	0	8349	609	21	4		4	KIF17	1	21039944	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26077	21039944	228210677	72	68317											
EIF4G3	8672	broad.mit.edu	37	chr1	21186698	21186698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaatcatgctttgttcCtgcattctctacttttactc	4	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21186698	A	A	21186698	1	1	61	0	1	0	0	0	0	0	0	0	5080	696	24	2		2	EIF4G3	1	21186698	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	146754	21186698	228063923	73	68318											
EIF4G3	8672	broad.mit.edu	37	chr1	21220026	21220026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaggtacgcctcttccaCcaggtgtctgccttccaaaa	7	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21220026	A	A	21220026	3	1	61	1	0	0	0	0	1	0	0	0	5080	507	18	3	2768	3	EIF4G3	1	21220026	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33328	21220026	228030595	74	68319											
RAP1GAP	5909	broad.mit.edu	37	chr1	21925942	21925942	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagggaccaaagagcccCcttccaagctcctgtggggc	11	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21925942	T	T	21925942	1	4	61	0	1	0	0	0	0	0	0	0	13145	638	22	4		4	RAP1GAP	1	21925942	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	705916	21925942	227324679	75	68320											
USP48	84196	broad.mit.edu	37	chr1	22016372	22016372	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactaccctctgctaaagacCcaaggcatcctttaaccacc	4	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22016372	G	G	22016372	1	3	61	0	1	0	0	0	0	0	0	0	17206	638	22	4		4	USP48	1	22016372	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	90430	22016372	227234249	76	68321											
LDLRAD2	401944	broad.mit.edu	37	chr1	22138963	22138963	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatggaggcttgttgtcttCtgcagttgccccaaaggttg	14	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22138963	T	T	22138963	2	4	61	1	0	0	0	0	0	0	0	1	8778	912	32	4		4	LDLRAD2	1	22138963	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	122591	22138963	227111658	77	68322											
CELA3B	23436	broad.mit.edu	37	chr1	22310525	22310525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgtgtgccacgtgctaGggatgtaatggtgcacaaag	13	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22310525	T	T	22310525	1	4	61	0	1	0	0	0	0	0	0	0	3244	1015	35	2		2	CELA3B	1	22310525	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	171562	22310525	226940096	78	68323											
C1QC	714	broad.mit.edu	37	chr1	22970634	22970634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggatcccagggatgcccGgcctgcccggggcaccaggg	17	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22970634	T	T	22970634	3	4	61	1	0	0	0	0	1	0	0	0	1977	1116	39	1	120	1	C1QC	1	22970634	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	660109	22970634	226279987	79	68324											
C1QB	713	broad.mit.edu	37	chr1	22986051	22986051	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcagctgcaccgggccCccagccatccctggcatccc	9	21	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22986051	A	A	22986051	2	1	61	1	0	0	0	0	0	0	0	1	1975	610	22	2		2	C1QB	1	22986051	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15417	22986051	226264570	80	68325											
EPHB2	2048	broad.mit.edu	37	chr1	23101737	23101737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtgtgcacttatgcaGgttggttctcctgtctggcc	12	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23101737	T	T	23101737	1	4	61	0	1	0	0	0	0	0	0	0	5217	1015	35	2		2	EPHB2	1	23101737	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	115686	23101737	226148884	81	68326											
EPHB2	2048	broad.mit.edu	37	chr1	23240069	23240069	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggaggtttgacattcAcctgcctcggctcacctctt	9	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23240069	C	C	23240069	1	2	61	0	1	0	0	0	0	0	0	0	5217	174	6	5		5	EPHB2	1	23240069	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	138332	23240069	226010552	82	68327											
ASAP3	55616	broad.mit.edu	37	chr1	23759550	23759550	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatggcatggtgagcatttAtctgggcatccaactgtacc	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23759550	G	G	23759550	1	3	61	0	1	0	0	0	0	0	0	0	1016	464	16	5		5	ASAP3	1	23759550	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	519481	23759550	225491071	83	68328											
RPL11	6135	broad.mit.edu	37	chr1	24021209	24021209	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggaaactttggttttggGatccaggaacacatcgatct	10	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24021209	T	T	24021209	2	4	61	1	0	0	0	0	0	0	0	1	13668	1161	41	3		3	RPL11	1	24021209	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	261659	24021209	225229412	84	68329											
HMGCL	3155	broad.mit.edu	37	chr1	24133727	24133728	+	Intron	DNP	GC	AA	AA													tgtctgcctggctgggaaacGcatgagctgaaggaaagccc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24133728	AA	AA	24133727	1	1	61	0	1	0	0	0	0	0	0	0	7296	1102	38	4		4	HMGCL	1	24133727	Intron	DNP	GC	TCGA-17-Z031-01A-01W-0746-08	112518	24133727	225116894	85	68330											
MYOM3	127294	broad.mit.edu	37	chr1	24389785	24389785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaggcatcagattttggGgccggcttgtctgcctctgc	12	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24389785	T	T	24389785	1	4	61	0	1	0	0	0	0	0	0	0	10187	1247	43	2		2	MYOM3	1	24389785	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	256058	24389785	224860836	86	68331											
MYOM3	127294	broad.mit.edu	37	chr1	24402585	24402585	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttctcccaacttcccttgAactccacccgtccccagtgg	6	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24402585	G	G	24402585	1	3	61	0	1	0	0	0	0	0	0	0	10187	261	9	5		5	MYOM3	1	24402585	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12800	24402585	224848036	87	68332											
AIM1L	55057	broad.mit.edu	37	chr1	26665911	26665911	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggctgatttccggggTgctgtagtcctgtggaagga	17	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26665911	A	A	26665911	3	1	61	1	0	0	0	0	1	0	0	0	431	1696	59	5	1831	5	AIM1L	1	26665911	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2263326	26665911	222584710	88	68333											
AIM1L	55057	broad.mit.edu	37	chr1	26672495	26672495	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagcccaccaccactggCggcaccatgcgggagacctg	15	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26672495	A	A	26672495	1	1	61	0	1	0	0	0	0	0	0	0	431	783	27	3		3	AIM1L	1	26672495	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6584	26672495	222578126	89	68334											
ZNF683	257101	broad.mit.edu	37	chr1	26691442	26691442	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggtggggtggaggcaggaGaagtgggtatccagggtaga	21	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26691442	C	C	26691442	3	2	61	1	0	0	0	0	1	0	0	0	18217	942	33	4	931	4	ZNF683	1	26691442	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18947	26691442	222559179	90	68335											
RPS6KA1	6195	broad.mit.edu	37	chr1	26881283	26881283	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagcctctggcctcagtctCcctatctgtacagtgagggg	11	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881283	T	T	26881283	1	4	61	0	1	0	0	0	0	0	0	0	13761	870	30	4		4	RPS6KA1	1	26881283	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	189841	26881283	222369338	91	68336											
RPS6KA1	6195	broad.mit.edu	37	chr1	26900543	26900543	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctacatctcccaccattgtGacctgacctccccacttctc	4	19	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26900543	A	A	26900543	1	1	61	0	1	0	0	0	0	0	0	0	13761	1305	45	4		4	RPS6KA1	1	26900543	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19260	26900543	222350078	92	68337											
ARID1A	8289	broad.mit.edu	37	chr1	27088771	27088771	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaccagcagaactccatgGggagctatggtccccagggg	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27088771	A	A	27088771	3	1	61	1	0	0	0	0	1	0	0	0	915	1232	43	4	2406	4	ARID1A	1	27088771	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	188228	27088771	222161850	93	68338											
ARID1A	8289	broad.mit.edu	37	chr1	27105553	27105553	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtagaatatttccgaCgatgcctgattgagatcttt	8	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27105553	T	T	27105553	4	4	61	1	0	0	0	0	0	1	0	0	915	528	19	4	5242	4	ARID1A	1	27105553	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16782	27105553	222145068	94	68339											
ZDHHC18	84243	broad.mit.edu	37	chr1	27158148	27158148	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcttgaagagggctgtgGtaggcagcctccctggggga	19	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27158148	C	C	27158148	1	2	61	0	1	0	0	0	0	0	0	0	17734	1276	44	4		4	ZDHHC18	1	27158148	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	52595	27158148	222092473	95	68340											
WDTC1	23038	broad.mit.edu	37	chr1	27627882	27627883	+	Missense_Mutation	DNP	GG	TT	TT													aaagggaaatttccggagcaGgcccacagcagcgcttgtga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	27627883	TT	TT	27627882	3	4	61	1	0	0	0	0	1	0	0	0	17469	991	35	2	1441	2	WDTC1	1	27627882	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	469734	27627882	221622739	96	68341											
GPR3	2827	broad.mit.edu	37	chr1	27721339	27721339	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgattactacagaattccAgaatgttaggctctccaggg	9	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27721339	G	G	27721339	1	3	61	0	1	0	0	0	0	0	0	0	6751	203	7	5		5	GPR3	1	27721339	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	93457	27721339	221529282	97	68342											
FGR	2268	broad.mit.edu	37	chr1	27950358	27950358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccccgtagcttctgaagtCcccttccaggccagcatcct	8	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27950358	A	A	27950358	3	1	61	1	0	0	0	0	1	0	0	0	5931	855	30	3	1563	3	FGR	1	27950358	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	229019	27950358	221300263	98	68343											
GMEB1	10691	broad.mit.edu	37	chr1	29018056	29018056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatttcagctttggggaAgagttgtttgataaataact	10	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29018056	G	G	29018056	1	3	61	0	1	0	0	0	0	0	0	0	6551	87	3	5		5	GMEB1	1	29018056	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1067698	29018056	220232565	99	68344											
OPRD1	4985	broad.mit.edu	37	chr1	29185797	29185797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgcccatcatggtcatgGctgtgacccgtccccggggt	14	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29185797	T	T	29185797	3	4	61	1	0	0	0	0	1	0	0	0	10978	1203	42	3	565	3	OPRD1	1	29185797	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	167741	29185797	220064824	100	68345											
MECR	51102	broad.mit.edu	37	chr1	29542917	29542917	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actccccactgcaatcttctCaaaaagccacacattccaga	3	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29542917	A	A	29542917	1	1	61	0	1	0	0	0	0	0	0	0	9517	841	29	3		3	MECR	1	29542917	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	357120	29542917	219707704	101	68346											
PTPRU	10076	broad.mit.edu	37	chr1	29581988	29581988	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttctacccacctgctgtgtGaccttgggcacattacttaa	7	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29581988	T	T	29581988	1	4	61	0	1	0	0	0	0	0	0	0	12921	1305	45	3		3	PTPRU	1	29581988	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39071	29581988	219668633	102	68347											
PTPRU	10076	broad.mit.edu	37	chr1	29649658	29649658	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaaagggttcatcttggctGatctgaacgtgtcagtgcag	13	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29649658	T	T	29649658	1	4	61	0	1	0	0	0	0	0	0	0	12921	1305	45	3		3	PTPRU	1	29649658	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67670	29649658	219600963	103	68348											
FABP3	2170	broad.mit.edu	37	chr1	31840171	31840171	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggaggacttggctttttAgaacaggcttggctgaaaga	15	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31840171	T	T	31840171	1	4	61	0	1	0	0	0	0	0	0	0	5404	435	15	5		5	FABP3	1	31840171	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2190513	31840171	217410450	104	68349											
TINAGL1	64129	broad.mit.edu	37	chr1	32042825	32042825	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgggtgcccagcagggtCgtgggcgccgggagctagca	18	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32042825	T	T	32042825	3	4	61	1	0	0	0	0	1	0	0	0	16045	884	31	4	78	4	TINAGL1	1	32042825	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	202654	32042825	217207796	105	68350											
COL16A1	1307	broad.mit.edu	37	chr1	32130960	32130960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacttcctagaagcaccaCttgggagcattacgtctgcc	9	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32130960	A	A	32130960	1	1	61	0	1	0	0	0	0	0	0	0	3705	580	20	3		3	COL16A1	1	32130960	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	88135	32130960	217119661	106	68351											
COL16A1	1307	broad.mit.edu	37	chr1	32167843	32167843	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcacctgaaaaccacagaGaccgggaaggcggatttctg	12	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32167843	T	T	32167843	1	4	61	0	1	0	0	0	0	0	0	0	3705	957	33	3		3	COL16A1	1	32167843	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36883	32167843	217082778	107	68352											
EIF3I	8668	broad.mit.edu	37	chr1	32687933	32687933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgccgccatggcaacgccGctgtcttctacttccgggaa	11	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32687933	T	T	32687933	1	4	61	0	1	0	0	0	0	0	0	0	5061	1102	38	3		3	EIF3I	1	32687933	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	520090	32687933	216562688	108	68353											
LCK	3932	broad.mit.edu	37	chr1	32741901	32741901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcaatacgaggcctgcCctattgacagccttcacccc	9	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32741901	T	T	32741901	1	4	61	0	1	0	0	0	0	0	0	0	8748	638	22	4		4	LCK	1	32741901	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53968	32741901	216508720	109	68354											
PHC2	1912	broad.mit.edu	37	chr1	33794655	33794655	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggtgacaagggttcctcAtagcttgagttatctgagca	12	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33794655	G	G	33794655	2	3	61	1	0	0	0	0	0	0	0	1	11912	224	8	5		5	PHC2	1	33794655	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1052754	33794655	215455966	110	68355											
ZSCAN20	7579	broad.mit.edu	37	chr1	33953933	33953933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccaaactcactctgatgGctttctcatcctatttcaag	4	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33953933	T	T	33953933	1	4	61	0	1	0	0	0	0	0	0	0	18361	1218	42	3		3	ZSCAN20	1	33953933	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	159278	33953933	215296688	111	68356											
ZSCAN20	7579	broad.mit.edu	37	chr1	33954282	33954282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaacattagggaatgaGgccttctgcaggggagaggg	17	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33954282	T	T	33954282	1	4	61	0	1	0	0	0	0	0	0	0	18361	1015	35	2		2	ZSCAN20	1	33954282	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	349	33954282	215296339	112	68357											
CSMD2	114784	broad.mit.edu	37	chr1	34006578	34006578	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattcactcctggcagatgTtcaggggccagttttctcac	10	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34006578	G	G	34006578	1	3	61	0	1	0	0	0	0	0	0	0	3979	1740	60	5		5	CSMD2	1	34006578	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	52296	34006578	215244043	113	68358											
CSMD2	114784	broad.mit.edu	37	chr1	34066735	34066735	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattctttttgtaccaacacTtccccacaccatgccctaaa	3	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34066735	G	G	34066735	1	3	61	0	1	0	0	0	0	0	0	0	3979	1624	56	5		5	CSMD2	1	34066735	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	60157	34066735	215183886	114	68359											
CSMD2	114784	broad.mit.edu	37	chr1	34067958	34067958	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattggctgttgacatggcAcctggcctaccagatggtga	12	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34067958	C	C	34067958	1	2	61	0	1	0	0	0	0	0	0	0	3979	174	6	5		5	CSMD2	1	34067958	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1223	34067958	215182663	115	68360											
CSMD2	114784	broad.mit.edu	37	chr1	34242967	34242967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggcagagggggctgcTggctggcttctgtccctttg	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34242967	C	C	34242967	1	2	61	0	1	0	0	0	0	0	0	0	3979	1595	55	5		5	CSMD2	1	34242967	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	175009	34242967	215007654	116	68361											
CSMD2	114784	broad.mit.edu	37	chr1	34254402	34254402	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgacatttaaaggactatCcaggatccaggcccgctcgg	11	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34254402	A	A	34254402	1	1	61	0	1	0	0	0	0	0	0	0	3979	870	30	3		3	CSMD2	1	34254402	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11435	34254402	214996219	117	68362											
CSMD2	114784	broad.mit.edu	37	chr1	34260576	34260576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtgaggcgggatgtggaCctgtagcaaggtctagatga	17	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34260576	A	A	34260576	1	1	61	0	1	0	0	0	0	0	0	0	3979	522	18	3		3	CSMD2	1	34260576	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6174	34260576	214990045	118	68363											
CSMD2	114784	broad.mit.edu	37	chr1	34261232	34261232	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcctgacttgtctcagttCtctctgactaaccttgacaa	7	12	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34261232	G	G	34261232	1	3	61	0	1	0	0	0	0	0	0	0	3979	928	32	4		4	CSMD2	1	34261232	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	656	34261232	214989389	119	68364											
CSMD2	114784	broad.mit.edu	37	chr1	34275344	34275345	+	Intron	INS	-	T	T													aagtagaaacaacaccatcaINStttttttgcagatgatgact					rs138924595	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34275345	T	T	34275344	6	5	61	0	1	1	1	0	0	0	0	0	3979	232	8	0		0	CSMD2	1	34275344	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	14112	34275344	214975277	120	68365											
CSMD2	114784	broad.mit.edu	37	chr1	34404788	34404788	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcttacttggtacttcccaTgatcccctgcagcttgctta	8	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34404788	A	A	34404788	1	1	61	0	1	0	0	0	0	0	0	0	3979	1479	51	5		5	CSMD2	1	34404788	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	129444	34404788	214845833	121	68366											
CSMD2	114784	broad.mit.edu	37	chr1	34450513	34450513	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggaaggaaatctcacacaGaaccccagaaccccagtgta	8	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34450513	T	T	34450513	1	4	61	0	1	0	0	0	0	0	0	0	3979	957	33	3		3	CSMD2	1	34450513	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45725	34450513	214800108	122	68367											
CSMD2	114784	broad.mit.edu	37	chr1	34452428	34452428	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatggactccagggctccTttcctcctctgttctgggac	10	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34452428	A	A	34452428	1	1	61	0	1	0	0	0	0	0	0	0	3979	1624	56	5		5	CSMD2	1	34452428	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1915	34452428	214798193	123	68368											
CSMD2	114784	broad.mit.edu	37	chr1	34470531	34470531	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctcagcaattacctcttCtcaatcctttctgggctggg	7	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34470531	T	T	34470531	1	4	61	0	1	0	0	0	0	0	0	0	3979	928	32	4		4	CSMD2	1	34470531	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18103	34470531	214780090	124	68369											
C1orf94	84970	broad.mit.edu	37	chr1	34672498	34672498	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgagcatgggaatgtcagGagtgtcccctgcatgggagc	15	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34672498	T	T	34672498	1	4	61	0	1	0	0	0	0	0	0	0	2093	1189	41	3		3	C1orf94	1	34672498	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	201967	34672498	214578123	125	68370											
DLGAP3	58512	broad.mit.edu	37	chr1	35367527	35367527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaaaatagtctttaaacCtcagaagggagaacagttca	8	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35367527	A	A	35367527	1	1	61	0	1	0	0	0	0	0	0	0	4601	696	24	2		2	DLGAP3	1	35367527	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	695029	35367527	213883094	126	68371											
ZMYM4	9202	broad.mit.edu	37	chr1	35862031	35862031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctttgtaagaagtcctGtagtgtcataggttactctt	8	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35862031	T	T	35862031	1	4	61	0	1	0	0	0	0	0	0	0	17828	1392	48	3		3	ZMYM4	1	35862031	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	494504	35862031	213388590	127	68372											
TFAP2E	339488	broad.mit.edu	37	chr1	36044221	36044221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcaggggatctctaggaCaggagctgatgtaaacagtc	12	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36044221	A	A	36044221	1	1	61	0	1	0	0	0	0	0	0	0	15914	493	17	3		3	TFAP2E	1	36044221	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	182190	36044221	213206400	128	68373											
EIF2C1	26523	broad.mit.edu	37	chr1	36358858	36358858	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagccctggatgtggccaTgaggcacctggcatccatga	13	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36358858	C	C	36358858	3	2	61	1	0	0	0	0	1	0	0	0	5045	1464	51	5	505	5	EIF2C1	1	36358858	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	314637	36358858	212891763	129	68374											
EIF2C1	26523	broad.mit.edu	37	chr1	36380999	36380999	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatactgtgctactgtgcgGgtacagcgaccacggcaaga	13	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36380999	T	T	36380999	2	4	61	1	0	0	0	0	0	0	0	1	5045	1219	43	2		2	EIF2C1	1	36380999	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22141	36380999	212869622	130	68375											
EIF2C3	192669	broad.mit.edu	37	chr1	36505660	36505660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatggtgtctagttctagaGttaaaaaccttgttagagtt	9	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36505660	T	T	36505660	1	4	61	0	1	0	0	0	0	0	0	0	5047	1044	36	3		3	EIF2C3	1	36505660	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	124661	36505660	212744961	131	68376											
ADPRHL2	54936	broad.mit.edu	37	chr1	36558942	36558942	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaaggctacgaggagacAgacatcctggcccaaagcct	12	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36558942	G	G	36558942	2	3	61	1	0	0	0	0	0	0	0	1	333	175	7	5		5	ADPRHL2	1	36558942	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	53282	36558942	212691679	132	68377											
THRAP3	9967	broad.mit.edu	37	chr1	36757120	36757120	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaactgtttgcccaacatAtagtgaccattgttcaccat	6	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36757120	T	T	36757120	3	4	61	1	0	0	0	0	1	0	0	0	15997	449	16	5	1905	5	THRAP3	1	36757120	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	198178	36757120	212493501	133	68378											
CSF3R	1441	broad.mit.edu	37	chr1	36937562	36937562	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaatcacatataaatgcGtccacgcctcccagacctgt	6	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36937562	A	A	36937562	1	1	61	0	1	0	0	0	0	0	0	0	3971	1160	40	4		4	CSF3R	1	36937562	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	180442	36937562	212313059	134	68379											
RSPO1	284654	broad.mit.edu	37	chr1	38078422	38078422	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcctggaggctggacagTgtccctaggcaggccctgca	16	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38078422	A	A	38078422	1	1	61	0	1	0	0	0	0	0	0	0	13820	1711	59	5		5	RSPO1	1	38078422	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1140860	38078422	211172199	135	68380											
RRAGC	64121	broad.mit.edu	37	chr1	39322845	39322845	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttaacatttaaacatttgatCccacaaaaaaaaattttttt	1	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39322845	T	T	39322845	1	4	61	0	1	0	0	0	0	0	0	0	13785	870	30	4		4	RRAGC	1	39322845	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1244423	39322845	209927776	136	68381											
RRAGC	64121	broad.mit.edu	37	chr1	39330332	39330332	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcattgtctttcaaactGagaagaatcctattcagcac	5	9	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39330332	A	A	39330332	1	1	61	0	1	0	0	0	0	0	0	0	13785	1305	45	4		4	RRAGC	1	39330332	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7487	39330332	209920289	137	68382											
MACF1	23499	broad.mit.edu	37	chr1	39918039	39918039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtaagggatatttgctGtcccaacccaagggatagat	10	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39918039	T	T	39918039	1	4	61	0	1	0	0	0	0	0	0	0	9232	1392	48	3		3	MACF1	1	39918039	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	587707	39918039	209332582	138	68383											
MFSD2A	84879	broad.mit.edu	37	chr1	40422998	40422998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatctgtgaaatgggacCccaaatcactactttgctgc	7	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40422998	A	A	40422998	1	1	61	0	1	0	0	0	0	0	0	0	9623	638	22	2		2	MFSD2A	1	40422998	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	504959	40422998	208827623	139	68384											
RLF	6018	broad.mit.edu	37	chr1	40697321	40697321	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcctcattagagttatAcaaactgaagtgagtacttt	7	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40697321	T	T	40697321	2	4	61	1	0	0	0	0	0	0	0	1	13500	381	14	5		5	RLF	1	40697321	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	274323	40697321	208553300	140	68385											
DEM1	64789	broad.mit.edu	37	chr1	40980948	40980948	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaatccaccacacaaagttGtgtctagaaaagccactggg	8	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40980948	A	A	40980948	2	1	61	1	0	0	0	0	0	0	0	1	4465	1368	48	4		4	DEM1	1	40980948	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	283627	40980948	208269673	141	68386											
RIMS3	9783	broad.mit.edu	37	chr1	41094586	41094586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcttggccaagcaggCcccattctccagcaggtaaa	8	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41094586	T	T	41094586	3	4	61	1	0	0	0	0	1	0	0	0	13480	739	26	4	324	4	RIMS3	1	41094586	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	113638	41094586	208156035	142	68387											
HIVEP3	59269	broad.mit.edu	37	chr1	42048561	42048561	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagatcaccccttttgttttCaaacccttcttggtcttttt	4	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42048561	G	G	42048561	3	3	61	1	0	0	0	0	1	0	0	0	7255	825	29	4	5336	4	HIVEP3	1	42048561	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	953975	42048561	207202060	143	68388											
GUCA2B	2981	broad.mit.edu	37	chr1	42620422	42620422	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcacagtgggcacccagCccccgcctgcaggcccagag	14	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42620422	T	T	42620422	2	4	61	1	0	0	0	0	0	0	0	1	6957	738	26	4		4	GUCA2B	1	42620422	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	571861	42620422	206630199	144	68389											
LEPRE1	64175	broad.mit.edu	37	chr1	43221387	43221387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttcccctccctggcaccCcacactgatgctcccatgtg	8	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43221387	A	A	43221387	1	1	61	0	1	0	0	0	0	0	0	0	8801	638	22	2		2	LEPRE1	1	43221387	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	600965	43221387	206029234	145	68390											
MPL	4352	broad.mit.edu	37	chr1	43803464	43803464	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcctgggaggggattgGggcccagcttcctgaaggga	19	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43803464	T	T	43803464	1	4	61	0	1	0	0	0	0	0	0	0	9824	1247	43	2		2	MPL	1	43803464	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	582077	43803464	205447157	146	68391											
MPL	4352	broad.mit.edu	37	chr1	43805596	43805596	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctctctcagctgacaGgcagacctagattgtgaagc	13	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43805596	A	A	43805596	1	1	61	0	1	0	0	0	0	0	0	0	9824	1015	35	4		4	MPL	1	43805596	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2132	43805596	205445025	147	68392											
KIAA0467	23334	broad.mit.edu	37	chr1	43896738	43896739	+	Missense_Mutation	DNP	GG	TT	TT													ctggaagtggagctccccacGgcctcggaccctcagcacca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43896739	TT	TT	43896738	3	4	61	1	0	0	0	0	1	0	0	0	8248	1103	39	1	2258	1	KIAA0467	1	43896738	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	91142	43896738	205353883	148	68393											
PTPRF	5792	broad.mit.edu	37	chr1	44084190	44084190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagagctcagggctgggGggctttgtagccagaaaggc	17	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44084190	T	T	44084190	1	4	61	0	1	0	0	0	0	0	0	0	12909	1247	43	2		2	PTPRF	1	44084190	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	187452	44084190	205166431	149	68394											
ST3GAL3	6487	broad.mit.edu	37	chr1	44317412	44317412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcattgctattgcatgGgtccgaagctgccggaacac	12	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44317412	T	T	44317412	1	4	61	0	1	0	0	0	0	0	0	0	15334	1247	43	2		2	ST3GAL3	1	44317412	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	233222	44317412	204933209	150	68395											
IPO13	9670	broad.mit.edu	37	chr1	44425706	44425706	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagtttgaggcttcctttGagatgatccctagaattcag	10	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44425706	T	T	44425706	1	4	61	0	1	0	0	0	0	0	0	0	7864	1305	45	3		3	IPO13	1	44425706	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	108294	44425706	204824915	151	68396											
IPO13	9670	broad.mit.edu	37	chr1	44425895	44425895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtgatggatagcagaagCgcctcacttcttcctgtgcc	10	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44425895	T	T	44425895	1	4	61	0	1	0	0	0	0	0	0	0	7864	783	27	4		4	IPO13	1	44425895	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	189	44425895	204824726	152	68397											
IPO13	9670	broad.mit.edu	37	chr1	44432217	44432217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtccttggagctggctggGgctgggcttaccagctccac	15	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44432217	T	T	44432217	1	4	61	0	1	0	0	0	0	0	0	0	7864	1247	43	2		2	IPO13	1	44432217	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6322	44432217	204818404	153	68398											
SLC6A9	6536	broad.mit.edu	37	chr1	44476399	44476399	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtgcccactgggtaccTcccccgttgcgatagcagag	11	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44476399	A	A	44476399	2	1	61	1	0	0	0	0	0	0	0	1	14805	1565	54	5		5	SLC6A9	1	44476399	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	44182	44476399	204774222	154	68399											
KLF17	128209	broad.mit.edu	37	chr1	44569921	44569921	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatcctcgtacttgttcttGaagtcctccaccagcccctg	6	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44569921	T	T	44569921	1	4	61	0	1	0	0	0	0	0	0	0	8416	1305	45	3		3	KLF17	1	44569921	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	93522	44569921	204680700	155	68400											
RNF220	55182	broad.mit.edu	37	chr1	44990079	44990079	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagagagtgaaaggccgGtccctaggcttggccaaccc	15	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44990079	A	A	44990079	1	1	61	0	1	0	0	0	0	0	0	0	13594	1276	44	4		4	RNF220	1	44990079	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	420158	44990079	204260542	156	68401											
EIF2B3	8891	broad.mit.edu	37	chr1	45341247	45341247	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacaagtctcgatgctcCcaaagaacatctcatgcccg	6	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45341247	T	T	45341247	1	4	61	0	1	0	0	0	0	0	0	0	5042	638	22	4		4	EIF2B3	1	45341247	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	351168	45341247	203909374	157	68402											
MUTYH	4595	broad.mit.edu	37	chr1	45796910	45796910	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcctcctgcgtcagccagcGagcacctggtggtacggtgg	14	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45796910	A	A	45796910	3	1	61	1	0	0	0	0	1	0	0	0	10087	1058	37	4	241	4	MUTYH	1	45796910	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	455663	45796910	203453711	158	68403											
CCDC17	149483	broad.mit.edu	37	chr1	46086298	46086298	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaagaaagcattggtaatGactggcacacagtggtcaat	10	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46086298	T	T	46086298	1	4	61	0	1	0	0	0	0	0	0	0	2820	1305	45	3		3	CCDC17	1	46086298	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	289388	46086298	203164323	159	68404											
MAST2	23139	broad.mit.edu	37	chr1	46383264	46383264	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctggccaaatggtaaaaCgcataccttactccttaata	5	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46383264	T	T	46383264	1	4	61	0	1	0	0	0	0	0	0	0	9417	551	19	4		4	MAST2	1	46383264	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	296966	46383264	202867357	160	68405											
MAST2	23139	broad.mit.edu	37	chr1	46487571	46487571	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaaaccaaagatgccagCagctttcgcttatatctgtc	7	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46487571	G	G	46487571	1	3	61	0	1	0	0	0	0	0	0	0	9417	725	25	4		4	MAST2	1	46487571	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104307	46487571	202763050	161	68406											
MKNK1	8569	broad.mit.edu	37	chr1	47046342	47046342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataacaagatgagtcaccCtactgcaagctcagatggga	10	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47046342	A	A	47046342	1	1	61	0	1	0	0	0	0	0	0	0	9697	696	24	2		2	MKNK1	1	47046342	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	558771	47046342	202204279	162	68407											
CYP4B1	1580	broad.mit.edu	37	chr1	47284381	47284381	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctccgctttgagttctcTctggacccctcacggctgcc	9	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47284381	C	C	47284381	2	2	61	1	0	0	0	0	0	0	0	1	4218	1538	54	5		5	CYP4B1	1	47284381	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	238039	47284381	201966240	163	68408											
CYP4B1	1580	broad.mit.edu	37	chr1	47284599	47284599	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttcaggaggcttgtagtTtagaagggaagtaggcatta	14	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47284599	G	G	47284599	1	3	61	0	1	0	0	0	0	0	0	0	4218	1856	64	5		5	CYP4B1	1	47284599	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	218	47284599	201966022	164	68409											
CYP4B1	1580	broad.mit.edu	37	chr1	47284638	47284638	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccatagacgactcctagaGgacagtgctatgtaaaaatg	9	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47284638	T	T	47284638	1	4	61	0	1	0	0	0	0	0	0	0	4218	1015	35	2		2	CYP4B1	1	47284638	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39	47284638	201965983	165	68410											
CYP4A11	1579	broad.mit.edu	37	chr1	47394997	47394997	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgggtggagattcagGgatgttggggtgttcagacc	20	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47394997	T	T	47394997	1	4	61	0	1	0	0	0	0	0	0	0	4216	1247	43	2		2	CYP4A11	1	47394997	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	110359	47394997	201855624	166	68411											
CYP4A11	1579	broad.mit.edu	37	chr1	47403054	47403054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctttataggaaactaggAgttactaagaaggcagtctt	12	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47403054	T	T	47403054	1	4	61	0	1	0	0	0	0	0	0	0	4216	319	11	5		5	CYP4A11	1	47403054	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8057	47403054	201847567	167	68412											
TAL1	6886	broad.mit.edu	37	chr1	47685837	47685837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatacgccgcacaactttgGtgtggggacctggagattag	14	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47685837	T	T	47685837	3	4	61	1	0	0	0	0	1	0	0	0	15660	1261	44	3	448	3	TAL1	1	47685837	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	282783	47685837	201564784	168	68413											
SLC5A9	200010	broad.mit.edu	37	chr1	48697132	48697132	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgtgtcttctctggtctCcccagtgtggccatgcacag	11	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48697132	A	A	48697132	1	1	61	0	1	0	0	0	0	0	0	0	14786	870	30	3		3	SLC5A9	1	48697132	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1011295	48697132	200553489	169	68414											
BEND5	79656	broad.mit.edu	37	chr1	49193631	49193631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatatccatgattttttcaCagatgtacttgttgactttg	7	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49193631	A	A	49193631	3	1	61	1	0	0	0	0	1	0	0	0	1406	478	17	3	76	3	BEND5	1	49193631	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	496499	49193631	200056990	170	68415											
AGBL4	84871	broad.mit.edu	37	chr1	49290406	49290406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggataaaagctaatggctgGggagcttggcctggagaaga	17	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49290406	T	T	49290406	1	4	61	0	1	0	0	0	0	0	0	0	377	1247	43	2		2	AGBL4	1	49290406	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	96775	49290406	199960215	171	68416											
AGBL4	84871	broad.mit.edu	37	chr1	49442413	49442413	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttgccattctctctgccTggaatgctcttcccctagag	7	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49442413	A	A	49442413	1	1	61	0	1	0	0	0	0	0	0	0	377	1595	55	5		5	AGBL4	1	49442413	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	152007	49442413	199808208	172	68417											
AGBL4	84871	broad.mit.edu	37	chr1	49464574	49464574	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagaatatggcagctgcttGaagatctctccatagttccc	10	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49464574	T	T	49464574	1	4	61	0	1	0	0	0	0	0	0	0	377	1305	45	3		3	AGBL4	1	49464574	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22161	49464574	199786047	173	68418											
AGBL4	84871	broad.mit.edu	37	chr1	49575806	49575806	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attacttgatagccatcagtCcccttcctgttttctcctcc	4	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49575806	G	G	49575806	1	3	61	0	1	0	0	0	0	0	0	0	377	870	30	4		4	AGBL4	1	49575806	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	111232	49575806	199674815	174	68419											
AGBL4	84871	broad.mit.edu	37	chr1	49947089	49947089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagttcattcgtgatttgGctcttggcttgactgttttt	11	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49947089	T	T	49947089	1	4	61	0	1	0	0	0	0	0	0	0	377	1218	42	3		3	AGBL4	1	49947089	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	371283	49947089	199303532	175	68420											
ELAVL4	1996	broad.mit.edu	37	chr1	50610203	50610203	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagatagttaataaacaggTactgtatttgatcttgtgag	10	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50610203	C	C	50610203	1	2	61	0	1	0	0	0	0	0	0	0	5094	1653	57	5		5	ELAVL4	1	50610203	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	663114	50610203	198640418	176	68421											
ELAVL4	1996	broad.mit.edu	37	chr1	50610781	50610781	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcgtcaactatttaccCcagaatatgacccaagaaga	5	12	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50610781	A	A	50610781	2	1	61	1	0	0	0	0	0	0	0	1	5094	610	22	2		2	ELAVL4	1	50610781	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	578	50610781	198639840	177	68422											
ELAVL4	1996	broad.mit.edu	37	chr1	50653491	50653491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaacaattaatgaggctgGgcatggtggctctcatctgt	11	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50653491	T	T	50653491	1	4	61	0	1	0	0	0	0	0	0	0	5094	1247	43	2		2	ELAVL4	1	50653491	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42710	50653491	198597130	178	68423											
FAF1	11124	broad.mit.edu	37	chr1	50941260	50941260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctccaagaactcgccaCtgggggtccggatccgcagt	13	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50941260	A	A	50941260	3	1	61	1	0	0	0	0	1	0	0	0	5415	565	20	3	215	3	FAF1	1	50941260	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	287769	50941260	198309361	179	68424											
FAF1	11124	broad.mit.edu	37	chr1	51049383	51049383	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcattttctgcgttttcTggcactaaaaaacaaacaaa	4	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51049383	A	A	51049383	2	1	61	1	0	0	0	0	0	0	0	1	5415	1567	55	5		5	FAF1	1	51049383	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	108123	51049383	198201238	180	68425											
TTC39A	22996	broad.mit.edu	37	chr1	51774925	51774925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaagcggatggccagccCcactcacttgtaggtctggt	11	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51774925	A	A	51774925	1	1	61	0	1	0	0	0	0	0	0	0	16833	638	22	2		2	TTC39A	1	51774925	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	725542	51774925	197475696	181	68426											
ZFYVE9	9372	broad.mit.edu	37	chr1	52626287	52626287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtccatagagtcgggcacCgtgttagccaggatggtgtt	14	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52626287	A	A	52626287	1	1	61	0	1	0	0	0	0	0	0	0	17797	667	23	1		1	ZFYVE9	1	52626287	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	851362	52626287	196624334	182	68427											
ZFYVE9	9372	broad.mit.edu	37	chr1	52704428	52704428	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggattggcagatgcaggtCtagatttaaaaggaacttgc	12	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52704428	A	A	52704428	3	1	61	1	0	0	0	0	1	0	0	0	17797	912	32	3	1345	3	ZFYVE9	1	52704428	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	78141	52704428	196546193	183	68428											
ZCCHC11	23318	broad.mit.edu	37	chr1	52903977	52903977	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgggagccagttctccatCtgttaatactctggaatcaa	8	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52903977	T	T	52903977	3	4	61	1	0	0	0	0	1	0	0	0	17706	913	32	4	1108	4	ZCCHC11	1	52903977	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	199549	52903977	196346644	184	68429											
SLC1A7	6512	broad.mit.edu	37	chr1	53580607	53580607	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggacgcccaggcggctaGaggtcttggcatccagggag	17	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53580607	T	T	53580607	3	4	61	1	0	0	0	0	1	0	0	0	14550	942	33	3	1464	3	SLC1A7	1	53580607	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	676630	53580607	195670014	185	68430											
SLC1A7	6512	broad.mit.edu	37	chr1	53597765	53597765	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttgaggctggtgggactGgagtatgtgacatgggatga	17	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53597765	A	A	53597765	1	1	61	0	1	0	0	0	0	0	0	0	14550	1363	47	4		4	SLC1A7	1	53597765	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17158	53597765	195652856	186	68431											
SLC1A7	6512	broad.mit.edu	37	chr1	53600159	53600159	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagactgcacagtggttcCgttcttcacagtctttgaag	10	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53600159	A	A	53600159	1	1	61	0	1	0	0	0	0	0	0	0	14550	667	23	1		1	SLC1A7	1	53600159	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2394	53600159	195650462	187	68432											
GLIS1	148979	broad.mit.edu	37	chr1	54132520	54132520	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcctaatgcctcctttcTtagtgatctcacccctccct	4	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54132520	G	G	54132520	1	3	61	0	1	0	0	0	0	0	0	0	6509	1624	56	5		5	GLIS1	1	54132520	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	532361	54132520	195118101	188	68433											
LRRC42	115353	broad.mit.edu	37	chr1	54427948	54427948	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaatgtatttgcatttctGatctgtctctgcctcactag	6	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54427948	C	C	54427948	1	2	61	0	1	0	0	0	0	0	0	0	9087	1305	45	4		4	LRRC42	1	54427948	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	295428	54427948	194822673	189	68434											
ACOT11	26027	broad.mit.edu	37	chr1	55072770	55072770	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttgcatgggagctggaAgcttcctggggcactgagat	15	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55072770	C	C	55072770	1	2	61	0	1	0	0	0	0	0	0	0	149	87	3	5		5	ACOT11	1	55072770	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	644822	55072770	194177851	190	68435											
ACOT11	26027	broad.mit.edu	37	chr1	55081929	55081929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaagcattacaaattacAgaacatttgagaaatacaga	5	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55081929	G	G	55081929	1	3	61	0	1	0	0	0	0	0	0	0	149	203	7	5		5	ACOT11	1	55081929	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9159	55081929	194168692	191	68436											
C1orf175	374977	broad.mit.edu	37	chr1	55118378	55118378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagactgtggaggcaagtgGcaagtgatgggctggaaagg	19	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55118378	T	T	55118378	1	4	61	0	1	0	0	0	0	0	0	0	2036	1218	42	3		3	C1orf175	1	55118378	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36449	55118378	194132243	192	68437											
C1orf175	374977	broad.mit.edu	37	chr1	55161094	55161094	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctgtgccgcatcctctaCctgctcatcccgctcctgga	9	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55161094	T	T	55161094	2	4	61	1	0	0	0	0	0	0	0	1	2036	518	18	4		4	C1orf175	1	55161094	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42716	55161094	194089527	193	68438											
PARS2	25973	broad.mit.edu	37	chr1	55224317	55224317	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaagggaagctgcttgtagGacagtttcttctgggaggca	16	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55224317	C	C	55224317	3	2	61	1	0	0	0	0	1	0	0	0	11561	1174	41	4	913	4	PARS2	1	55224317	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	63223	55224317	194026304	194	68439											
DHCR24	1718	broad.mit.edu	37	chr1	55337000	55337000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccccagtcttggtcagCagcagctgacaccctggctt	10	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55337000	A	A	55337000	1	1	61	0	1	0	0	0	0	0	0	0	4516	725	25	3		3	DHCR24	1	55337000	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	112683	55337000	193913621	195	68440											
BSND	7809	broad.mit.edu	37	chr1	55472900	55472900	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtggtcatccacaagggctCagacgagagtgaaggggaaa	15	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55472900	T	T	55472900	3	4	61	1	0	0	0	0	1	0	0	0	1540	838	29	4	513	4	BSND	1	55472900	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	135900	55472900	193777721	196	68441											
USP24	23358	broad.mit.edu	37	chr1	55559452	55559452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctctagctctatggccCcctctgtgtcgtggcataaa	10	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55559452	A	A	55559452	1	1	61	0	1	0	0	0	0	0	0	0	17181	638	22	2		2	USP24	1	55559452	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	86552	55559452	193691169	197	68442											
C1orf168	199920	broad.mit.edu	37	chr1	57185863	57185863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatttgcctttagaattaCgacatatcactagattttgt	5	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57185863	A	A	57185863	3	1	61	1	0	0	0	0	1	0	0	0	2032	536	19	3	84	3	C1orf168	1	57185863	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1626411	57185863	192064758	198	68443											
C1orf168	199920	broad.mit.edu	37	chr1	57254435	57254435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaaatgcagtgctctcaGgggaagtgggctggtctagg	16	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57254435	T	T	57254435	1	4	61	0	1	0	0	0	0	0	0	0	2032	1015	35	2		2	C1orf168	1	57254435	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	68572	57254435	191996186	199	68444											
C8A	731	broad.mit.edu	37	chr1	57347195	57347195	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccagtgtgagacggtatAcaatggggaatggagggagc	19	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57347195	T	T	57347195	3	4	61	1	0	0	0	0	1	0	0	0	2441	391	14	5	560	5	C8A	1	57347195	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	92760	57347195	191903426	200	68445											
DAB1	1600	broad.mit.edu	37	chr1	57969041	57969041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagttaacacacatgacttTctctcatttgaactgcctct	4	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57969041	C	C	57969041	1	2	61	0	1	0	0	0	0	0	0	0	4250	1798	62	5		5	DAB1	1	57969041	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	621846	57969041	191281580	201	68446											
DAB1	1600	broad.mit.edu	37	chr1	57969281	57969281	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttagtctcttgtcttcctTctcaacctcaactctactca	2	15	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57969281	A	A	57969281	1	1	61	0	1	0	0	0	0	0	0	0	4250	1798	62	5		5	DAB1	1	57969281	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	240	57969281	191281340	202	68447											
DAB1	1600	broad.mit.edu	37	chr1	57970257	57970257	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgagggagaatatataactCtcctgtgcagaagaatttca	9	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57970257	G	G	57970257	1	3	61	0	1	0	0	0	0	0	0	0	4250	928	32	4		4	DAB1	1	57970257	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	976	57970257	191280364	203	68448											
DAB1	1600	broad.mit.edu	37	chr1	58203356	58203356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccacactggaccatcccCttgatgcttttttaattctt	4	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58203356	T	T	58203356	1	4	61	0	1	0	0	0	0	0	0	0	4250	696	24	4		4	DAB1	1	58203356	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	233099	58203356	191047265	204	68449											
DAB1	1600	broad.mit.edu	37	chr1	58231321	58231321	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccatgttgctgaatccaaTggtcagttctcaatccttac	6	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58231321	C	C	58231321	1	2	61	0	1	0	0	0	0	0	0	0	4250	1479	51	5		5	DAB1	1	58231321	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27965	58231321	191019300	205	68450											
DAB1	1600	broad.mit.edu	37	chr1	58301328	58301328	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattctcacttccccagctAcagcctgtgcaaacaaggga	8	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58301328	G	G	58301328	1	3	61	0	1	0	0	0	0	0	0	0	4250	406	14	5		5	DAB1	1	58301328	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	70007	58301328	190949293	206	68451											
DAB1	1600	broad.mit.edu	37	chr1	58403282	58403282	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggaacagagccagtactaAgagacagagcttttataaag	10	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58403282	C	C	58403282	1	2	61	0	1	0	0	0	0	0	0	0	4250	87	3	5		5	DAB1	1	58403282	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	101954	58403282	190847339	207	68452											
DAB1	1600	broad.mit.edu	37	chr1	58503090	58503090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggccagttaggaactgGgctgcacagcaggagatgag	16	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58503090	T	T	58503090	1	4	61	0	1	0	0	0	0	0	0	0	4250	1247	43	2		2	DAB1	1	58503090	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	99808	58503090	190747531	208	68453											
DAB1	1600	broad.mit.edu	37	chr1	58514271	58514271	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccatatccactgacatcaCagctgccaccaaagccacca	4	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58514271	G	G	58514271	1	3	61	0	1	0	0	0	0	0	0	0	4250	493	17	4		4	DAB1	1	58514271	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11181	58514271	190736350	209	68454											
DAB1	1600	broad.mit.edu	37	chr1	58514842	58514842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaggaccacacagtccGtgagcgttccctattgctca	8	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58514842	T	T	58514842	1	4	61	0	1	0	0	0	0	0	0	0	4250	1160	40	3		3	DAB1	1	58514842	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	571	58514842	190735779	210	68455											
DAB1	1600	broad.mit.edu	37	chr1	58694436	58694436	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacgttgatggcataggtGgttatgcaaacaagacagaa	11	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58694436	A	A	58694436	1	1	61	0	1	0	0	0	0	0	0	0	4250	1363	47	4		4	DAB1	1	58694436	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	179594	58694436	190556185	211	68456											
DAB1	1600	broad.mit.edu	37	chr1	58895869	58895869	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacacaaagccagggcacaTccagcaatgtccaacttgta	8	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58895869	A	A	58895869	1	1	61	0	1	0	0	0	0	0	0	0	4250	1450	50	5		5	DAB1	1	58895869	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	201433	58895869	190354752	212	68457											
NFIA	4774	broad.mit.edu	37	chr1	61554415	61554415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttcctgatggcctccGcgttatgccggattcttcct	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61554415	T	T	61554415	1	4	61	0	1	0	0	0	0	0	0	0	10465	1102	38	3		3	NFIA	1	61554415	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2658546	61554415	187696206	213	68458											
INADL	10207	broad.mit.edu	37	chr1	62321803	62321803	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacctggagaccgcctggtCtcagtcaatgaatactgttt	9	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62321803	T	T	62321803	2	4	61	1	0	0	0	0	0	0	0	1	7801	900	32	4		4	INADL	1	62321803	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	767388	62321803	186928818	214	68459											
INADL	10207	broad.mit.edu	37	chr1	62545329	62545329	+	Intron	DEL	G	-	-													aaacgagaactggaccaggaGgcagaagtctgactctggat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62545329	-	-	62545329	6	5	61	0	1	1	0	1	0	0	0	0	7801	1015	35	0		0	INADL	1	62545329	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	223526	62545329	186705292	215	68460											
L1TD1	54596	broad.mit.edu	37	chr1	62672596	62672597	+	Frame_Shift_Del	DEL	GG	-	-													ttcagagaactccagtagtaGgacagagtttcagcaaataa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62672597	-	-	62672596	7	5	61	1	0	1	0	1	0	0	0	0	8661	1000	35	0	298	0	L1TD1	1	62672596	Frame_Shift_Del	DEL	GG	TCGA-17-Z031-01A-01W-0746-08	127267	62672596	186578025	216	68461											
KANK4	163782	broad.mit.edu	37	chr1	62728897	62728897	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtgaggctggacctcgtgGaggtaggaggccaccacggc	18	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62728897	T	T	62728897	2	4	61	1	0	0	0	0	0	0	0	1	8049	1161	41	3		3	KANK4	1	62728897	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	56301	62728897	186521724	217	68462											
KANK4	163782	broad.mit.edu	37	chr1	62739586	62739586	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcgttctcttggtgaaacTgtccttccagttgggctaca	11	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62739586	A	A	62739586	3	1	61	1	0	0	0	0	1	0	0	0	8049	1580	55	5	1829	5	KANK4	1	62739586	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10689	62739586	186511035	218	68463											
DOCK7	85440	broad.mit.edu	37	chr1	63113986	63113986	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgaacgtcttttaaggtCatcctgtcatgcaaaacatt	6	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63113986	G	G	63113986	3	3	61	1	0	0	0	0	1	0	0	0	4732	826	29	4	5982	4	DOCK7	1	63113986	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	374400	63113986	186136635	219	68464											
ROR1	4919	broad.mit.edu	37	chr1	64624702	64624702	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaagaataaaatggaaatcCtgtacatactagtgccaagt	8	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64624702	T	T	64624702	2	4	61	1	0	0	0	0	0	0	0	1	13637	680	24	4		4	ROR1	1	64624702	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1510716	64624702	184625919	220	68465											
CACHD1	57685	broad.mit.edu	37	chr1	65124290	65124290	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaataccttccacgtgaaGatagaaggtagaggcagtag	12	6	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65124290	A	A	65124290	1	1	61	0	1	0	0	0	0	0	0	0	2563	957	33	4		4	CACHD1	1	65124290	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	499588	65124290	184126331	221	68466											
RAVER2	55225	broad.mit.edu	37	chr1	65278516	65278516	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttggcaagtgtgttgccCagtgtgtgcttatcatgtaa	11	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65278516	T	T	65278516	2	4	61	1	0	0	0	0	0	0	0	1	13203	581	21	4		4	RAVER2	1	65278516	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	154226	65278516	183972105	222	68467											
LEPR	3953	broad.mit.edu	37	chr1	66098940	66098940	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatttttacattttgaagaAggggagcaaatctaaaaaaa	8	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66098940	T	T	66098940	1	4	61	0	1	0	0	0	0	0	0	0	8800	87	3	5		5	LEPR	1	66098940	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	820424	66098940	183151681	223	68468											
PDE4B	5142	broad.mit.edu	37	chr1	66667271	66667271	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttgggagggcgtatgtgtCgagtaatttatccatttctt	11	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66667271	A	A	66667271	1	1	61	0	1	0	0	0	0	0	0	0	11734	899	31	3		3	PDE4B	1	66667271	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	568331	66667271	182583350	224	68469											
SGIP1	84251	broad.mit.edu	37	chr1	67133325	67133325	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatttatgataacccagTgtgaatgaggcagatgaaat	9	4	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67133325	A	A	67133325	1	1	61	0	1	0	0	0	0	0	0	0	14319	1711	59	5		5	SGIP1	1	67133325	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	466054	67133325	182117296	225	68470											
SGIP1	84251	broad.mit.edu	37	chr1	67142774	67142774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaacaaggccttttcccaCtggaagtaagttatgtgtct	9	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67142774	A	A	67142774	3	1	61	1	0	0	0	0	1	0	0	0	14319	565	20	3	784	3	SGIP1	1	67142774	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9449	67142774	182107847	226	68471											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67241989	67241989	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaacattttcctgtggtcaCcgtcaatcatattttgaaag	6	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67241989	G	G	67241989	3	3	61	1	0	0	0	0	1	0	0	0	15841	507	18	4	249	4	TCTEX1D1	1	67241989	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	99215	67241989	182008632	227	68472											
INSL5	10022	broad.mit.edu	37	chr1	67264039	67264039	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccctaaaatgaaatagaatCatacacataattttttaaaa	2	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67264039	A	A	67264039	1	1	61	0	1	0	0	0	0	0	0	0	7839	841	29	3		3	INSL5	1	67264039	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22050	67264039	181986582	228	68473											
INSL5	10022	broad.mit.edu	37	chr1	67266977	67266977	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggagtgactgtcactctCttgaccaatttatactaact	6	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67266977	A	A	67266977	1	1	61	0	1	0	0	0	0	0	0	0	7839	928	32	3		3	INSL5	1	67266977	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2938	67266977	181983644	229	68474											
IL12RB2	3595	broad.mit.edu	37	chr1	67794212	67794212	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagatagaagttactttgatGcaagtaaaagggtgcattat	10	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67794212	C	C	67794212	1	2	61	0	1	0	0	0	0	0	0	0	7697	1334	46	4		4	IL12RB2	1	67794212	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	527235	67794212	181456409	230	68475											
WLS	79971	broad.mit.edu	37	chr1	68638732	68638732	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggaaactgaggcccactGctaacacagttctcagtgtg	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68638732	A	A	68638732	1	1	61	0	1	0	0	0	0	0	0	0	17503	1334	46	4		4	WLS	1	68638732	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	844520	68638732	180611889	231	68476											
RPE65	6121	broad.mit.edu	37	chr1	68900727	68900727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctattcccttagagatcacCaaacctagtgctttattctt	4	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68900727	A	A	68900727	1	1	61	0	1	0	0	0	0	0	0	0	13656	609	21	2		2	RPE65	1	68900727	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	261995	68900727	180349894	232	68477											
LRRC7	57554	broad.mit.edu	37	chr1	70195665	70195665	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaggcacctgcaggctcaAcaccacatgaaagctaccaa	7	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70195665	G	G	70195665	1	3	61	0	1	0	0	0	0	0	0	0	9107	58	2	5		5	LRRC7	1	70195665	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1294938	70195665	179054956	233	68478											
LRRC7	57554	broad.mit.edu	37	chr1	70339240	70339240	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtggagggagcagcttttcGggcaccagaaatggcagcat	15	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70339240	C	C	70339240	1	2	61	0	1	0	0	0	0	0	0	0	9107	1131	39	4		4	LRRC7	1	70339240	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	143575	70339240	178911381	234	68479											
LRRC7	57554	broad.mit.edu	37	chr1	70385375	70385375	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaattcagcgactgcagctCggccaaggccaggggagacc	13	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70385375	A	A	70385375	1	1	61	0	1	0	0	0	0	0	0	0	9107	899	31	3		3	LRRC7	1	70385375	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	46135	70385375	178865246	235	68480											
LRRC7	57554	broad.mit.edu	37	chr1	70394756	70394756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcatatccattcagacCtattctctttttatctacat	1	11	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70394756	A	A	70394756	1	1	61	0	1	0	0	0	0	0	0	0	9107	696	24	2		2	LRRC7	1	70394756	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9381	70394756	178855865	236	68481											
LRRC7	57554	broad.mit.edu	37	chr1	70445926	70445926	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctagaggtctgttaaaggTggaatttcttagatgcttaa	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70445926	A	A	70445926	1	1	61	0	1	0	0	0	0	0	0	0	9107	1711	59	5		5	LRRC7	1	70445926	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	51170	70445926	178804695	237	68482											
LRRC7	57554	broad.mit.edu	37	chr1	70446073	70446073	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcccagcctgaagttctGgatcaaatacaaaatttgag	7	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70446073	C	C	70446073	2	2	61	1	0	0	0	0	0	0	0	1	9107	1335	47	4		4	LRRC7	1	70446073	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	147	70446073	178804548	238	68483											
LRRC7	57554	broad.mit.edu	37	chr1	70484347	70484347	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagtgagaccagactattGactgttatatatttgcaatt	8	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70484347	T	T	70484347	1	4	61	0	1	0	0	0	0	0	0	0	9107	1305	45	3		3	LRRC7	1	70484347	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38274	70484347	178766274	239	68484											
LRRC40	55631	broad.mit.edu	37	chr1	70611638	70611638	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacattttccattaacaaggTttttcatctaatttcatttg	3	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70611638	G	G	70611638	1	3	61	0	1	0	0	0	0	0	0	0	9085	1740	60	5		5	LRRC40	1	70611638	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	127291	70611638	178638983	240	68485											
HHLA3	11147	broad.mit.edu	37	chr1	70820956	70820956	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtcaggaaagtcatagaaGagtttaggtgctgactttgg	13	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70820956	C	C	70820956	1	2	61	0	1	0	0	0	0	0	0	0	7163	957	33	4		4	HHLA3	1	70820956	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	209318	70820956	178429665	241	68486											
CTH	1491	broad.mit.edu	37	chr1	70904437	70904437	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttggaattagtgacacactGattcgactttctgtgggctt	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70904437	T	T	70904437	2	4	61	1	0	0	0	0	0	0	0	1	4043	1277	45	3		3	CTH	1	70904437	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	83481	70904437	178346184	242	68487											
NEGR1	257194	broad.mit.edu	37	chr1	72241943	72241943	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttggttccttcattgacGgtcatatcatttgagatgtc	9	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72241943	T	T	72241943	2	4	61	1	0	0	0	0	0	0	0	1	10412	1103	39	1		1	NEGR1	1	72241943	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1337506	72241943	177008678	243	68488											
LRRIQ3	127255	broad.mit.edu	37	chr1	74505195	74505195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatgagaagatcaacccCaagacacatatgggcagcca	8	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74505195	A	A	74505195	1	1	61	0	1	0	0	0	0	0	0	0	9117	609	21	2		2	LRRIQ3	1	74505195	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2263252	74505195	174745426	244	68489											
LRRIQ3	127255	broad.mit.edu	37	chr1	74507269	74507269	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctactctaactctttctcgaGcaacttgtgccatggctaca	6	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74507269	C	C	74507269	3	2	61	1	0	0	0	0	1	0	0	0	9117	971	34	4	536	4	LRRIQ3	1	74507269	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2074	74507269	174743352	245	68490											
LRRIQ3	127255	broad.mit.edu	37	chr1	74540441	74540441	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatgttttctgtgttcacTggaattttttaaatcaacag	6	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74540441	C	C	74540441	3	2	61	1	0	0	0	0	1	0	0	0	9117	1580	55	5	985	5	LRRIQ3	1	74540441	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	33172	74540441	174710180	246	68491											
LRRIQ3	127255	broad.mit.edu	37	chr1	74562614	74562614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcgtctcagaggggtaccCggctgtgtggagtgtcagtc	15	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74562614	A	A	74562614	1	1	61	0	1	0	0	0	0	0	0	0	9117	667	23	1		1	LRRIQ3	1	74562614	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22173	74562614	174688007	247	68492											
TNNI3K	51086	broad.mit.edu	37	chr1	74835217	74835217	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagccagtttgccattgtcActcaatacatatcagggggt	9	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74835217	T	T	74835217	3	4	61	1	0	0	0	0	1	0	0	0	16452	159	6	5	2032	5	TNNI3K	1	74835217	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	272603	74835217	174415404	248	68493											
TNNI3K	51086	broad.mit.edu	37	chr1	74835229	74835229	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattgtcactcaatacataTcagggggttctctgttctcc	7	12	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74835229	C	C	74835229	3	2	61	1	0	0	0	0	1	0	0	0	16452	1435	50	5	2044	5	TNNI3K	1	74835229	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	12	74835229	174415392	249	68494											
TNNI3K	51086	broad.mit.edu	37	chr1	74858201	74858201	+	Intron	DEL	A	-	-													ccagtctacttctcatctatAaagtcatttctcccaggttc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74858201	-	-	74858201	6	5	61	0	1	1	0	1	0	0	0	0	16452	377	13	0		0	TNNI3K	1	74858201	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	22972	74858201	174392420	250	68495											
TNNI3K	51086	broad.mit.edu	37	chr1	74957721	74957721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttaaatccatattttatGttatgtcttcacacctgttg	5	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74957721	T	T	74957721	1	4	61	0	1	0	0	0	0	0	0	0	16452	1392	48	3		3	TNNI3K	1	74957721	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	99520	74957721	174292900	251	68496											
C1orf173	127254	broad.mit.edu	37	chr1	75044403	75044403	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttccttccttcctTcctcctcccccgatattctg	2	20	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75044403	C	C	75044403	1	2	61	0	1	0	0	0	0	0	0	0	2034	1798	62	5		5	C1orf173	1	75044403	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	86682	75044403	174206218	252	68497											
SLC44A5	204962	broad.mit.edu	37	chr1	75684994	75684994	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgcccccctggagctatgActttgtatacaggtaccccc	8	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75684994	C	C	75684994	3	2	61	1	0	0	0	0	1	0	0	0	14753	275	10	5	1092	5	SLC44A5	1	75684994	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	640591	75684994	173565627	253	68498											
SLC44A5	204962	broad.mit.edu	37	chr1	75880918	75880918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtgttgtgggagggacCtggtgggagatgactgaatc	17	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75880918	A	A	75880918	1	1	61	0	1	0	0	0	0	0	0	0	14753	696	24	2		2	SLC44A5	1	75880918	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	195924	75880918	173369703	254	68499											
SLC44A5	204962	broad.mit.edu	37	chr1	76107308	76107308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggattatttgggtcacgGttcaaaattgcataacaagg	11	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76107308	T	T	76107308	1	4	61	0	1	0	0	0	0	0	0	0	14753	1276	44	3		3	SLC44A5	1	76107308	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	226390	76107308	173143313	255	68500											
ACADM	34	broad.mit.edu	37	chr1	76208926	76208926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgcagagagggagagaGccaggcaggaacaccaagaa	16	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76208926	T	T	76208926	1	4	61	0	1	0	0	0	0	0	0	0	113	986	34	3		3	ACADM	1	76208926	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	101618	76208926	173041695	256	68501											
ACADM	34	broad.mit.edu	37	chr1	76210390	76210390	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaatgtctccctagaggGcagttccccttctggaaggc	13	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76210390	A	A	76210390	1	1	61	0	1	0	0	0	0	0	0	0	113	1218	42	4		4	ACADM	1	76210390	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1464	76210390	173040231	257	68502											
ASB17	127247	broad.mit.edu	37	chr1	76384631	76384631	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaggaacttaggacactgaCgtatgttagatttctaaatt	8	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76384631	T	T	76384631	1	4	61	0	1	0	0	0	0	0	0	0	1025	551	19	4		4	ASB17	1	76384631	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	174241	76384631	172865990	258	68503											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76550458	76550460	+	Intron	DEL	GTT	-	-													ttcctgccctgctccaactcGttgtcctagaccatccagtg					rs143267412		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76550460	-	-	76550458	6	5	61	0	1	1	0	1	0	0	0	0	15343	1160	40	0		0	ST6GALNAC3	1	76550458	Intron	DEL	GTT	TCGA-17-Z031-01A-01W-0746-08	165827	76550458	172700163	259	68504											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76725231	76725231	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatcattctctaataaAagttaagcccttctctctgt	3	11	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76725231	C	C	76725231	1	2	61	0	1	0	0	0	0	0	0	0	15343	29	1	5		5	ST6GALNAC3	1	76725231	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	174773	76725231	172525390	260	68505											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77094268	77094268	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtgcttcattcttcatctCaatctttctctccttttctt	3	12	7	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77094268	A	A	77094268	1	1	61	0	1	0	0	0	0	0	0	0	15343	841	29	3		3	ST6GALNAC3	1	77094268	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	369037	77094268	172156353	261	68506											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77510163	77510163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcagctacatgcggcGggacggcaagggccaggtct	15	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77510163	T	T	77510163	3	4	61	1	0	0	0	0	1	0	0	0	15345	1116	39	1	546	1	ST6GALNAC5	1	77510163	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	415895	77510163	171740458	262	68507											
PIGK	10026	broad.mit.edu	37	chr1	77661148	77661148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaataaaatagtttgaCtcagaaaaaaagaaaagaat	7	3	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77661148	A	A	77661148	1	1	61	0	1	0	0	0	0	0	0	0	11985	580	20	3		3	PIGK	1	77661148	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	150985	77661148	171589473	263	68508											
AK5	26289	broad.mit.edu	37	chr1	77784044	77784044	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgctgctaaaccattcatGagaactttgcccccatgatc	7	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77784044	C	C	77784044	1	2	61	0	1	0	0	0	0	0	0	0	443	1305	45	4		4	AK5	1	77784044	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	122896	77784044	171466577	264	68509											
AK5	26289	broad.mit.edu	37	chr1	77873469	77873469	+	Intron	DEL	C	-	-													caaactttgtcccccaccttCcctcccctctctagtagtcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77873469	-	-	77873469	6	5	61	0	1	1	0	1	0	0	0	0	443	870	30	0		0	AK5	1	77873469	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	89425	77873469	171377152	265	68510											
AK5	26289	broad.mit.edu	37	chr1	77914115	77914116	+	Intron	DNP	GG	AT	AT													ctgagggctgcagagacattGggatgacctgcctgtggaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	77914116	AT	AT	77914115	1	1	61	0	1	0	0	0	0	0	0	0	443	1363	47	4		4	AK5	1	77914115	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	40646	77914115	171336506	266	68511											
USP33	23032	broad.mit.edu	37	chr1	78181354	78181354	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgactcagcaatccattaGaatgtcttagaagtcactga	7	9	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78181354	T	T	78181354	1	4	61	0	1	0	0	0	0	0	0	0	17191	957	33	3		3	USP33	1	78181354	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	267239	78181354	171069267	267	68512											
LPHN2	23266	broad.mit.edu	37	chr1	82187622	82187622	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaggaaagtgatctagaAgttgataatgaatgggtgat	14	1	1	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82187622	G	G	82187622	1	3	61	0	1	0	0	0	0	0	0	0	9003	87	3	5		5	LPHN2	1	82187622	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4006268	82187622	167062999	268	68513											
PRKACB	5567	broad.mit.edu	37	chr1	84668568	84668568	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattgaaactatattgtgtcAtaattattattctacattgg	5	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84668568	C	C	84668568	1	2	61	0	1	0	0	0	0	0	0	0	12604	232	8	5		5	PRKACB	1	84668568	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2480946	84668568	164582053	269	68514											
RPF1	80135	broad.mit.edu	37	chr1	84955400	84955400	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcatcacaacatcagatAgacctcatggggtaaacaca	6	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84955400	C	C	84955400	2	2	61	1	0	0	0	0	0	0	0	1	13657	412	15	5		5	RPF1	1	84955400	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	286832	84955400	164295221	270	68515											
MCOLN2	255231	broad.mit.edu	37	chr1	85397235	85397235	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaacagacactcagcaactGtgttcagattttcaaactgt	6	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85397235	C	C	85397235	3	2	61	1	0	0	0	0	1	0	0	0	9489	1377	48	4	360	4	MCOLN2	1	85397235	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	441835	85397235	163853386	271	68516											
C1orf52	148423	broad.mit.edu	37	chr1	85725170	85725170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccgcttctccgccttgttCctacagccgcccgccgactt	8	19	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85725170	A	A	85725170	3	1	61	1	0	0	0	0	1	0	0	0	2066	854	30	3	413	3	C1orf52	1	85725170	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	327935	85725170	163525451	272	68517											
DDAH1	23576	broad.mit.edu	37	chr1	85791038	85791039	+	Intron	DEL	GC	-	-													gtgtgtgcatgcacgtgcgtGcgcgcgcgcgcgcacacaca					rs71783231		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85791039	-	-	85791038	6	5	61	0	1	1	0	1	0	0	0	0	4354	1334	46	0		0	DDAH1	1	85791038	Intron	DEL	GC	TCGA-17-Z031-01A-01W-0746-08	65868	85791038	163459583	273	68518											
COL24A1	255631	broad.mit.edu	37	chr1	86252220	86252220	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggctcaataaaatgtaggAagagttgtgccccgaaaggc	13	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86252220	T	T	86252220	1	4	61	0	1	0	0	0	0	0	0	0	3715	261	9	5		5	COL24A1	1	86252220	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	461182	86252220	162998401	274	68519											
COL24A1	255631	broad.mit.edu	37	chr1	86282459	86282459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgagcaaagagatatcCgtactactcacaggaagtcc	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86282459	A	A	86282459	1	1	61	0	1	0	0	0	0	0	0	0	3715	667	23	1		1	COL24A1	1	86282459	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30239	86282459	162968162	275	68520											
COL24A1	255631	broad.mit.edu	37	chr1	86324325	86324325	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttccttccttcctTccttccttccttccttcctt	0	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86324325	C	C	86324325	1	2	61	0	1	0	0	0	0	0	0	0	3715	1798	62	5		5	COL24A1	1	86324325	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	41866	86324325	162926296	276	68521											
COL24A1	255631	broad.mit.edu	37	chr1	86529438	86529438	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtccaggatgtcctttgAgaccctgtaaaagaataagt	11	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86529438	T	T	86529438	3	4	61	1	0	0	0	0	1	0	0	0	3715	304	11	5	3644	5	COL24A1	1	86529438	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	205113	86529438	162721183	277	68522											
CLCA1	1179	broad.mit.edu	37	chr1	86942072	86942072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacattgctttcttccagtGtgagaaggtaattttgccat	8	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86942072	T	T	86942072	1	4	61	0	1	0	0	0	0	0	0	0	3488	1392	48	3		3	CLCA1	1	86942072	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	412634	86942072	162308549	278	68523											
CLCA1	1179	broad.mit.edu	37	chr1	86952762	86952762	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttccagctcacatggcctGatgtggacaatgggcttgac	12	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86952762	T	T	86952762	1	4	61	0	1	0	0	0	0	0	0	0	3488	1305	45	3		3	CLCA1	1	86952762	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10690	86952762	162297859	279	68524											
CLCA1	1179	broad.mit.edu	37	chr1	86960013	86960013	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaattccccagccctctGgtagtttatgcaaatattcg	7	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86960013	T	T	86960013	2	4	61	1	0	0	0	0	0	0	0	1	3488	1335	47	2		2	CLCA1	1	86960013	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7251	86960013	162290608	280	68525											
CLCA4	22802	broad.mit.edu	37	chr1	87040320	87040320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacgttctttctcatcaCatggaacagtctgcctccca	7	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87040320	A	A	87040320	3	1	61	1	0	0	0	0	1	0	0	0	3490	478	17	3	1603	3	CLCA4	1	87040320	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	80307	87040320	162210301	281	68526											
SH3GLB1	51100	broad.mit.edu	37	chr1	87181526	87181526	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataatgaaacaaactgaAgtgttattgcagccaaatcc	6	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87181526	G	G	87181526	2	3	61	1	0	0	0	0	0	0	0	1	14366	69	3	5		5	SH3GLB1	1	87181526	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	141206	87181526	162069095	282	68527											
SEP15	9403	broad.mit.edu	37	chr1	87369133	87369133	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccccaaaagcagacaccTgaaaataaaaaatgggaaat	7	9	0	2	rs111719584		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87369133	A	A	87369133	5	1	61	1	0	0	0	0	0	0	1	0	14166	1594	55	5	430	5	SEP15	1	87369133	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	187607	87369133	161881488	283	68528											
HS2ST1	9653	broad.mit.edu	37	chr1	87538983	87538983	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatcataagccttttaggGgagagggccagctaactttt	12	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87538983	A	A	87538983	1	1	61	0	1	0	0	0	0	0	0	0	7429	1247	43	4		4	HS2ST1	1	87538983	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	169850	87538983	161711638	284	68529											
PKN2	5586	broad.mit.edu	37	chr1	89250387	89250387	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtccctggacggtcaaaaGcaacatcagttgcactgcct	9	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89250387	A	A	89250387	3	1	61	1	0	0	0	0	1	0	0	0	12075	971	34	4	1077	4	PKN2	1	89250387	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1711404	89250387	160000234	285	68530											
GBP2	2634	broad.mit.edu	37	chr1	89579665	89579665	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatgaagggcccatatttTtctgcctctcatgacgtaga	8	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89579665	G	G	89579665	1	3	61	0	1	0	0	0	0	0	0	0	6336	1856	64	5		5	GBP2	1	89579665	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	329278	89579665	159670956	286	68531											
GBP7	388646	broad.mit.edu	37	chr1	89637451	89637451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcttcccagccagcttGttcattaggtaggatttgcc	9	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89637451	T	T	89637451	3	4	61	1	0	0	0	0	1	0	0	0	6341	1368	48	3	1788	3	GBP7	1	89637451	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	57786	89637451	159613170	287	68532											
GBP5	115362	broad.mit.edu	37	chr1	89729611	89729611	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccgtttacaaatgtcattCtgttttgcatctagtagagt	7	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89729611	T	T	89729611	2	4	61	1	0	0	0	0	0	0	0	1	6339	912	32	4		4	GBP5	1	89729611	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	92160	89729611	159521010	288	68533											
GBP6	163351	broad.mit.edu	37	chr1	89834038	89834038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatgttgatgggtgcttGggaaacactgagacagagaa	13	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89834038	T	T	89834038	1	4	61	0	1	0	0	0	0	0	0	0	6340	1363	47	2		2	GBP6	1	89834038	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	104427	89834038	159416583	289	68534											
BARHL2	343472	broad.mit.edu	37	chr1	91182574	91182574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agataggagaagaaggcgccGtccctacggtatcaatctcc	11	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91182574	T	T	91182574	3	4	61	1	0	0	0	0	1	0	0	0	1319	1145	40	3	996	3	BARHL2	1	91182574	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1348536	91182574	158068047	290	68535											
BARHL2	343472	broad.mit.edu	37	chr1	91182817	91182817	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaccagcgaagaaagctatCgatcgtaaaacaaaataaac	7	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91182817	A	A	91182817	1	1	61	0	1	0	0	0	0	0	0	0	1319	899	31	3		3	BARHL2	1	91182817	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	243	91182817	158067804	291	68536											
HFM1	164045	broad.mit.edu	37	chr1	91740190	91740190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgataactgtgacttgatGgtagccagtgactatctttc	9	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91740190	T	T	91740190	1	4	61	0	1	0	0	0	0	0	0	0	7150	1363	47	2		2	HFM1	1	91740190	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	557373	91740190	157510431	292	68537											
HFM1	164045	broad.mit.edu	37	chr1	91843849	91843849	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgagaaaatgagcattttCcacttgaagggataaaacaa	8	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91843849	A	A	91843849	1	1	61	0	1	0	0	0	0	0	0	0	7150	870	30	3		3	HFM1	1	91843849	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	103659	91843849	157406772	293	68538											
TGFBR3	7049	broad.mit.edu	37	chr1	92174405	92174405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgccttcaccagctctacCtgcacagctgtcctgtggcc	9	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92174405	A	A	92174405	1	1	61	0	1	0	0	0	0	0	0	0	15946	696	24	2		2	TGFBR3	1	92174405	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	330556	92174405	157076216	294	68539											
TGFBR3	7049	broad.mit.edu	37	chr1	92184870	92184870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttctggaaaacactcacgGagttatagtagaccacacca	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92184870	T	T	92184870	3	4	61	1	0	0	0	0	1	0	0	0	15946	1188	41	3	1022	3	TGFBR3	1	92184870	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10465	92184870	157065751	295	68540											
TGFBR3	7049	broad.mit.edu	37	chr1	92237561	92237561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagaagggcagtggaggCagcatgagtgggtgtgaaga	20	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92237561	A	A	92237561	1	1	61	0	1	0	0	0	0	0	0	0	15946	725	25	3		3	TGFBR3	1	92237561	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	52691	92237561	157013060	296	68541											
GLMN	11146	broad.mit.edu	37	chr1	92712518	92712518	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagcccagggagttgaagcTgcagtgagccacaatcatgc	13	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92712518	A	A	92712518	1	1	61	0	1	0	0	0	0	0	0	0	6512	1595	55	5		5	GLMN	1	92712518	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	474957	92712518	156538103	297	68542											
MTF2	22823	broad.mit.edu	37	chr1	93576304	93576304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactcagtattacttcctaGgagaggttaaaaaatcagca	7	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93576304	T	T	93576304	1	4	61	0	1	0	0	0	0	0	0	0	10017	1015	35	2		2	MTF2	1	93576304	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	863786	93576304	155674317	298	68543											
CCDC18	343099	broad.mit.edu	37	chr1	93646040	93646040	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagtctcggccccctcaggCcaggcgtgagcgccgcccgc	13	19	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93646040	G	G	93646040	1	3	61	0	1	0	0	0	0	0	0	0	2821	754	26	4		4	CCDC18	1	93646040	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	69736	93646040	155604581	299	68544											
BCAR3	8412	broad.mit.edu	37	chr1	94107969	94107969	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacattgagtataatgtgtcCaacattatttcaccctattc	4	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94107969	A	A	94107969	1	1	61	0	1	0	0	0	0	0	0	0	1354	609	21	2		2	BCAR3	1	94107969	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	461929	94107969	155142652	300	68545											
BCAR3	8412	broad.mit.edu	37	chr1	94140198	94140199	+	Missense_Mutation	DNP	CC	AT	AT													gaaggtttcgccgtgccggtCctgccatgggctctcctgga					rs112584760	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	94140199	AT	AT	94140198	3	1	61	1	0	0	0	0	1	0	0	0	1354	855	30	3	2232	3	BCAR3	1	94140198	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	32229	94140198	155110423	301	68546											
ABCA4	24	broad.mit.edu	37	chr1	94502167	94502167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcgaactcaggtggtcCatctgccttggcctcccaaa	10	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94502167	A	A	94502167	1	1	61	0	1	0	0	0	0	0	0	0	34	609	21	2		2	ABCA4	1	94502167	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	361969	94502167	154748454	302	68547											
ABCA4	24	broad.mit.edu	37	chr1	94521033	94521033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagtctttcccttgacgGccagggggagttcagagtgt	15	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94521033	T	T	94521033	1	4	61	0	1	0	0	0	0	0	0	0	34	1218	42	3		3	ABCA4	1	94521033	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18866	94521033	154729588	303	68548											
ABCA4	24	broad.mit.edu	37	chr1	94553395	94553395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccaggtgctggggacaCggcagtgaatgaaacaaagt	15	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94553395	T	T	94553395	1	4	61	0	1	0	0	0	0	0	0	0	34	551	19	4		4	ABCA4	1	94553395	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32362	94553395	154697226	304	68549											
PTBP2	58155	broad.mit.edu	37	chr1	97272119	97272119	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatagtaaatcttttgctAtttttctttgctatttaaaa	4	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97272119	G	G	97272119	1	3	61	0	1	0	0	0	0	0	0	0	12832	464	16	5		5	PTBP2	1	97272119	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2718724	97272119	151978502	305	68550											
LPPR4	9890	broad.mit.edu	37	chr1	99762312	99762312	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattatggtaggagaaggaAttctctactgttgcctctcc	10	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99762312	G	G	99762312	3	3	61	1	0	0	0	0	1	0	0	0	9014	101	4	5	437	5	LPPR4	1	99762312	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2490193	99762312	149488309	306	68551											
PALMD	54873	broad.mit.edu	37	chr1	100155365	100155365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagcttaggcagccctGtccaccattccccatttgat	7	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100155365	T	T	100155365	3	4	61	1	0	0	0	0	1	0	0	0	11505	1377	48	3	1575	3	PALMD	1	100155365	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	393053	100155365	149095256	307	68552											
AGL	178	broad.mit.edu	37	chr1	100382214	100382214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatttttccagattgatgGgcccggagactactgcaaag	10	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100382214	T	T	100382214	3	4	61	1	0	0	0	0	1	0	0	0	384	1232	43	2	4603	2	AGL	1	100382214	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	226849	100382214	148868407	308	68553											
CCDC76	54482	broad.mit.edu	37	chr1	100605185	100605185	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acattattaacagttcttttAtggttttgtttttgttaagg	7	3	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100605185	T	T	100605185	1	4	61	0	1	0	0	0	0	0	0	0	2878	464	16	5		5	CCDC76	1	100605185	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	222971	100605185	148645436	309	68554											
CDC14A	8556	broad.mit.edu	37	chr1	100874165	100874165	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgactttttaataaaaaccActctgactggtgtgagatgg	9	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100874165	T	T	100874165	1	4	61	0	1	0	0	0	0	0	0	0	3086	174	6	5		5	CDC14A	1	100874165	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	268980	100874165	148376456	310	68555											
VCAM1	7412	broad.mit.edu	37	chr1	101185528	101185528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttagcattcaattttaGccctggttttggcttcagtc	8	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101185528	T	T	101185528	1	4	61	0	1	0	0	0	0	0	0	0	17264	986	34	3		3	VCAM1	1	101185528	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	311363	101185528	148065093	311	68556											
VCAM1	7412	broad.mit.edu	37	chr1	101188704	101188704	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagacttactgaaaggagatCatctcatgaagagtcaggaa	10	6	3	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101188704	G	G	101188704	3	3	61	1	0	0	0	0	1	0	0	0	17264	826	29	4	479	4	VCAM1	1	101188704	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3176	101188704	148061917	312	68557											
VCAM1	7412	broad.mit.edu	37	chr1	101189029	101189029	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatttgtattcattcacaAcataatgtttgtcaatagta	4	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101189029	G	G	101189029	1	3	61	0	1	0	0	0	0	0	0	0	17264	58	2	5		5	VCAM1	1	101189029	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	325	101189029	148061592	313	68558											
S1PR1	1901	broad.mit.edu	37	chr1	101705739	101705739	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctttacttggtcgctggcCaccccagtgtttggaaaaaa	9	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101705739	G	G	101705739	1	3	61	0	1	0	0	0	0	0	0	0	13904	609	21	4		4	S1PR1	1	101705739	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	516710	101705739	147544882	314	68559											
COL11A1	1301	broad.mit.edu	37	chr1	103352455	103352455	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatttcatatgctcaatgTcttgtttcagggaattgagg	10	5	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103352455	C	C	103352455	3	2	61	1	0	0	0	0	1	0	0	0	3699	1667	58	5	674	5	COL11A1	1	103352455	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1646716	103352455	145898166	315	68560											
COL11A1	1301	broad.mit.edu	37	chr1	103427665	103427665	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatcatcacttcttaagttCtgagaaaaaatgcttctaat	4	7	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103427665	A	A	103427665	1	1	61	0	1	0	0	0	0	0	0	0	3699	928	32	3		3	COL11A1	1	103427665	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	75210	103427665	145822956	316	68561											
COL11A1	1301	broad.mit.edu	37	chr1	103427757	103427757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggaagacctctttccCctgggaaaccacgtaatcct	7	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103427757	A	A	103427757	3	1	61	1	0	0	0	0	1	0	0	0	3699	623	22	2	2443	2	COL11A1	1	103427757	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	92	103427757	145822864	317	68562											
COL11A1	1301	broad.mit.edu	37	chr1	103453106	103453106	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtaagaactcaatttcTgacaccagttattgaaagaa	7	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103453106	C	C	103453106	1	2	61	0	1	0	0	0	0	0	0	0	3699	1595	55	5		5	COL11A1	1	103453106	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	25349	103453106	145797515	318	68563											
COL11A1	1301	broad.mit.edu	37	chr1	103470072	103470072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacaaaatgaatgagagtaTagaacatttggacaatgtat	9	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103470072	A	A	103470072	1	1	61	0	1	0	0	0	0	0	0	0	3699	1421	49	5		5	COL11A1	1	103470072	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16966	103470072	145780549	319	68564											
COL11A1	1301	broad.mit.edu	37	chr1	103492005	103492005	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagagataagaaattaatgTtattgatgagttatttttgt	8	0	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103492005	A	A	103492005	1	1	61	0	1	0	0	0	0	0	0	0	3699	1740	60	5		5	COL11A1	1	103492005	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	21933	103492005	145758616	320	68565											
AMY1A	276	broad.mit.edu	37	chr1	104234063	104234063	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatatcacaatattcataCcatcattaaaagaggtgtta	5	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104234063	T	T	104234063	1	4	61	0	1	0	0	0	0	0	0	0	591	522	18	4		4	AMY1A	1	104234063	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	742058	104234063	145016558	321	68566											
NTNG1	22854	broad.mit.edu	37	chr1	107867442	107867442	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctttacagtcacagaccTgaggataaggctgttaagac	9	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107867442	A	A	107867442	3	1	61	1	0	0	0	0	1	0	0	0	10799	1580	55	5	791	5	NTNG1	1	107867442	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3633379	107867442	141383179	322	68567											
NTNG1	22854	broad.mit.edu	37	chr1	107867722	107867722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcctcagcagtaatttGtaatcccaaacttgctgtcc	5	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107867722	T	T	107867722	1	4	61	0	1	0	0	0	0	0	0	0	10799	1392	48	3		3	NTNG1	1	107867722	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	280	107867722	141382899	323	68568											
VAV3	10451	broad.mit.edu	37	chr1	108160138	108160138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttttgcacaattaatcaCaggatcaaaaacaaaatgaa	5	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108160138	A	A	108160138	1	1	61	0	1	0	0	0	0	0	0	0	17260	493	17	3		3	VAV3	1	108160138	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	292416	108160138	141090483	324	68569											
VAV3	10451	broad.mit.edu	37	chr1	108185134	108185134	+	Intron	DEL	T	-	-													cctttactttcttaatcaacTtgcttttgctttgcactgtg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108185134	-	-	108185134	6	5	61	0	1	1	0	1	0	0	0	0	17260	1624	56	0		0	VAV3	1	108185134	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	24996	108185134	141065487	325	68570											
VAV3	10451	broad.mit.edu	37	chr1	108185308	108185308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccggcctggagctgtaaaGggggtccttcatgcagagct	14	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108185308	T	T	108185308	3	4	61	1	0	0	0	0	1	0	0	0	17260	1000	35	2	728	2	VAV3	1	108185308	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	174	108185308	141065313	326	68571											
VAV3	10451	broad.mit.edu	37	chr1	108209071	108209071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatggccattaactatgGcaggtaggtgaaatctgtga	13	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108209071	T	T	108209071	1	4	61	0	1	0	0	0	0	0	0	0	17260	1218	42	3		3	VAV3	1	108209071	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23763	108209071	141041550	327	68572											
VAV3	10451	broad.mit.edu	37	chr1	108313276	108313276	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accttttctattgactccaaAgtttctgtatatttttcttc	3	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108313276	G	G	108313276	2	3	61	1	0	0	0	0	0	0	0	1	17260	59	3	5		5	VAV3	1	108313276	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	104205	108313276	140937345	328	68573											
VAV3	10451	broad.mit.edu	37	chr1	108315499	108315499	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcatataaggtcattttcTattatgcagtaaatgcaata	5	5	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108315499	C	C	108315499	1	2	61	0	1	0	0	0	0	0	0	0	17260	1537	53	5		5	VAV3	1	108315499	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2223	108315499	140935122	329	68574											
CELSR2	1952	broad.mit.edu	37	chr1	109795318	109795318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtccacgtcaggcatcGtgcgaacgctacggaggctg	14	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109795318	T	T	109795318	3	4	61	1	0	0	0	0	1	0	0	0	3252	1145	40	3	2619	3	CELSR2	1	109795318	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1479819	109795318	139455303	330	68575											
CELSR2	1952	broad.mit.edu	37	chr1	109795370	109795370	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggcccagtatgtcttgcGggcatatgcagtggacaagg	15	9	1	0	rs138048818	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109795370	A	A	109795370	3	1	61	1	0	0	0	0	1	0	0	0	3252	1116	39	4	2671	4	CELSR2	1	109795370	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	52	109795370	139455251	331	68576											
CELSR2	1952	broad.mit.edu	37	chr1	109805604	109805604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcctggtatgggggcccGgggtggagccaggctgggat	21	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109805604	T	T	109805604	1	4	61	0	1	0	0	0	0	0	0	0	3252	1131	39	1		1	CELSR2	1	109805604	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10234	109805604	139445017	332	68577											
PSMA5	5686	broad.mit.edu	37	chr1	109955772	109955772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaacctgcaatgtaaaagCgacagtgacccagtggccaa	9	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109955772	A	A	109955772	1	1	61	0	1	0	0	0	0	0	0	0	12776	783	27	3		3	PSMA5	1	109955772	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	150168	109955772	139294849	333	68578											
GSTM3	2947	broad.mit.edu	37	chr1	110282970	110282970	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgggaggggctttatacCcgacataagggggcggggcc	19	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110282970	A	A	110282970	1	1	61	0	1	0	0	0	0	0	0	0	6905	638	22	2		2	GSTM3	1	110282970	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	327198	110282970	138967651	334	68579											
EPS8L3	79574	broad.mit.edu	37	chr1	110300629	110300629	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtctttgcctgggccttctCcagctttcccatgaacagct	9	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110300629	T	T	110300629	3	4	61	1	0	0	0	0	1	0	0	0	5239	864	30	4	1056	4	EPS8L3	1	110300629	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17659	110300629	138949992	335	68580											
FAM40A	85369	broad.mit.edu	37	chr1	110594571	110594571	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaagtgacatctttcaCtccctgcccgtggtactcag	10	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110594571	G	G	110594571	1	3	61	0	1	0	0	0	0	0	0	0	5611	580	20	4		4	FAM40A	1	110594571	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	293942	110594571	138656050	336	68581											
SLC6A17	388662	broad.mit.edu	37	chr1	110727868	110727868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggggttgtcgggaaagtGcttaggactgctcctggcaa	15	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110727868	T	T	110727868	1	4	61	0	1	0	0	0	0	0	0	0	14794	1334	46	3		3	SLC6A17	1	110727868	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	133297	110727868	138522753	337	68582											
KCNC4	3749	broad.mit.edu	37	chr1	110768510	110768510	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaggttgaggaagtaaCactctgggtctgggagaccc	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110768510	T	T	110768510	1	4	61	0	1	0	0	0	0	0	0	0	8087	493	17	4		4	KCNC4	1	110768510	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40642	110768510	138482111	338	68583											
RBM15	64783	broad.mit.edu	37	chr1	110883840	110883840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggactgcagctacttctGtgcctgcttacgagccactg	10	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110883840	T	T	110883840	3	4	61	1	0	0	0	0	1	0	0	0	13224	1377	48	3	1815	3	RBM15	1	110883840	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	115330	110883840	138366781	339	68584											
RBM15	64783	broad.mit.edu	37	chr1	110884807	110884807	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgccttcccaccttgtgAgttctcccagcagttcctgg	8	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110884807	C	C	110884807	3	2	61	1	0	0	0	0	1	0	0	0	13224	304	11	5	2782	5	RBM15	1	110884807	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	967	110884807	138365814	340	68585											
C1orf103	55791	broad.mit.edu	37	chr1	111494009	111494009	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctggaggacacttcctttTctagcataaatgacggctgt	9	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111494009	C	C	111494009	2	2	61	1	0	0	0	0	0	0	0	1	1997	1780	62	5		5	C1orf103	1	111494009	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	609202	111494009	137756612	341	68586											
CHI3L2	1117	broad.mit.edu	37	chr1	111781621	111781621	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgttccatcttcaatttGacagcagagtaaagcatcct	7	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111781621	T	T	111781621	1	4	61	0	1	0	0	0	0	0	0	0	3372	1305	45	3		3	CHI3L2	1	111781621	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	287612	111781621	137469000	342	68587											
WDR77	79084	broad.mit.edu	37	chr1	111985269	111985269	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcccctgatgacaaagaaCagtacctgtgtggggagaac	13	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111985269	G	G	111985269	1	3	61	0	1	0	0	0	0	0	0	0	17454	493	17	4		4	WDR77	1	111985269	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	203648	111985269	137265352	343	68588											
ADORA3	140	broad.mit.edu	37	chr1	112028472	112028472	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatggacgtcctagaaggaAccacagcagatttcatgttg	11	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112028472	C	C	112028472	1	2	61	0	1	0	0	0	0	0	0	0	329	58	2	5		5	ADORA3	1	112028472	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	43203	112028472	137222149	344	68589											
SLC16A1	6566	broad.mit.edu	37	chr1	113466733	113466733	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagaaggccctgcaggccGcgtatggcgccagcgccccc	14	16	0	1	rs144957900	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113466733	A	A	113466733	1	1	61	0	1	0	0	0	0	0	0	0	14515	1102	38	4		4	SLC16A1	1	113466733	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1438261	113466733	135783888	345	68590											
PTPN22	26191	broad.mit.edu	37	chr1	114381267	114381267	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaataagtcagaggcTggttttcagtgaagcaatgt	11	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114381267	A	A	114381267	1	1	61	0	1	0	0	0	0	0	0	0	12895	1595	55	5		5	PTPN22	1	114381267	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	914534	114381267	134869354	346	68591											
PTPN22	26191	broad.mit.edu	37	chr1	114397253	114397253	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttcaccagcagatttgagGaagaagatacctggggacaa	11	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114397253	A	A	114397253	1	1	61	0	1	0	0	0	0	0	0	0	12895	1189	41	4		4	PTPN22	1	114397253	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15986	114397253	134853368	347	68592											
OLFML3	56944	broad.mit.edu	37	chr1	114522029	114522029	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtgagagagacccagagaTcaggagagaaggcaccgccc	14	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114522029	A	A	114522029	1	1	61	0	1	0	0	0	0	0	0	0	10954	1450	50	5		5	OLFML3	1	114522029	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	124776	114522029	134728592	348	68593											
OLFML3	56944	broad.mit.edu	37	chr1	114524161	114524161	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttgtcatctgtgggaccCtctatgtcgtctataacacc	7	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114524161	T	T	114524161	3	4	61	1	0	0	0	0	1	0	0	0	10954	681	24	4	1001	4	OLFML3	1	114524161	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2132	114524161	134726460	349	68594											
TRIM33	51592	broad.mit.edu	37	chr1	114970493	114970493	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgctgctgtagtaacttCatctgtctttcctttgtaac	6	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114970493	T	T	114970493	3	4	61	1	0	0	0	0	1	0	0	0	16631	826	29	4	2260	4	TRIM33	1	114970493	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	446332	114970493	134280128	350	68595											
DENND2C	163259	broad.mit.edu	37	chr1	115153635	115153635	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagtcacaaaggtaggtgCcactccacctaacccatgat	7	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115153635	T	T	115153635	1	4	61	0	1	0	0	0	0	0	0	0	4470	754	26	4		4	DENND2C	1	115153635	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	183142	115153635	134096986	351	68596											
SYCP1	6847	broad.mit.edu	37	chr1	115486936	115486936	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatagcatttactaatattCatgctatttttctttactta	2	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115486936	G	G	115486936	1	3	61	0	1	0	0	0	0	0	0	0	15550	841	29	4		4	SYCP1	1	115486936	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	333301	115486936	133763685	352	68597											
SYCP1	6847	broad.mit.edu	37	chr1	115527291	115527291	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatttgtgaaaccctttatTaataatgcatattttatttg	4	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115527291	A	A	115527291	1	1	61	0	1	0	0	0	0	0	0	0	15550	1769	61	5		5	SYCP1	1	115527291	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	40355	115527291	133723330	353	68598											
SYCP1	6847	broad.mit.edu	37	chr1	115537618	115537618	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaaaaaaaactaaaagAagctgaaaagttatttgttt	6	2	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115537618	G	G	115537618	3	3	61	1	0	0	0	0	1	0	0	0	15550	246	9	5	3031	5	SYCP1	1	115537618	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10327	115537618	133713003	354	68599											
TSHB	7252	broad.mit.edu	37	chr1	115576687	115576687	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaggactgtagaaataccaGgatgcccactccatgttgct	9	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115576687	C	C	115576687	3	2	61	1	0	0	0	0	1	0	0	0	16746	1001	35	4	262	4	TSHB	1	115576687	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39069	115576687	133673934	355	68600											
ATP1A1	476	broad.mit.edu	37	chr1	116943370	116943370	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcttttatcaaccaggGggaaacactcctccatatgt	8	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116943370	C	C	116943370	1	2	61	0	1	0	0	0	0	0	0	0	1132	1247	43	4		4	ATP1A1	1	116943370	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1366683	116943370	132307251	356	68601											
CD2	914	broad.mit.edu	37	chr1	117297470	117297470	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaatggaactctgaaAattaagcatctgaagaccga	7	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117297470	T	T	117297470	3	4	61	1	0	0	0	0	1	0	0	0	3009	11	1	5	285	5	CD2	1	117297470	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	354100	117297470	131953151	357	68602											
CD2	914	broad.mit.edu	37	chr1	117311047	117311047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatttacattgatttcacCtggccaagatgaactctatt	5	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117311047	A	A	117311047	1	1	61	0	1	0	0	0	0	0	0	0	3009	696	24	2		2	CD2	1	117311047	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13577	117311047	131939574	358	68603											
TTF2	8458	broad.mit.edu	37	chr1	117602776	117602776	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagggcagctgtgattggTtggaggtgagcgaagttcct	17	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117602776	G	G	117602776	1	3	61	0	1	0	0	0	0	0	0	0	16845	1740	60	5		5	TTF2	1	117602776	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	291729	117602776	131647845	359	68604											
VTCN1	79679	broad.mit.edu	37	chr1	117692222	117692222	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actctgccttatctatggatCcacttcagtcataattaaca	4	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117692222	G	G	117692222	1	3	61	0	1	0	0	0	0	0	0	0	17361	870	30	4		4	VTCN1	1	117692222	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	89446	117692222	131558399	360	68605											
VTCN1	79679	broad.mit.edu	37	chr1	117714866	117714866	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcattgttcccagcctccTatggctcaggaatgggccca	10	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117714866	A	A	117714866	1	1	61	0	1	0	0	0	0	0	0	0	17361	1537	53	5		5	VTCN1	1	117714866	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	22644	117714866	131535755	361	68606											
MAN1A2	10905	broad.mit.edu	37	chr1	117957268	117957269	+	Intron	INS	-	C	C													gtgaagggaatcttttttttINSccccccaaagagaacaggaa					rs78622511		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117957269	C	C	117957268	6	5	61	0	1	1	1	0	0	0	0	0	9303	1798	62	0		0	MAN1A2	1	117957268	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	242402	117957268	131293353	362	68607											
WDR3	10885	broad.mit.edu	37	chr1	118476179	118476180	+	Intron	INS	-	G	G													gatggagaggtagtagaagtINSgggggggctctgatttattt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118476180	G	G	118476179	6	5	61	0	1	1	1	0	0	0	0	0	17412	1711	59	0		0	WDR3	1	118476179	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	518911	118476179	130774442	363	68608											
WDR3	10885	broad.mit.edu	37	chr1	118495318	118495318	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcttggttacaaatatgccAgtaggtatctgacaggctgt	12	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118495318	T	T	118495318	1	4	61	0	1	0	0	0	0	0	0	0	17412	203	7	5		5	WDR3	1	118495318	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19139	118495318	130755303	364	68609											
SPAG17	200162	broad.mit.edu	37	chr1	118506361	118506361	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagaggggaagaaacctgGggtctaatacctcaaatttg	12	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118506361	C	C	118506361	1	2	61	0	1	0	0	0	0	0	0	0	15095	1247	43	4		4	SPAG17	1	118506361	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11043	118506361	130744260	365	68610											
SPAG17	200162	broad.mit.edu	37	chr1	118727878	118727879	+	5'Flank	DNP	CC	AA	AA													agccacgcccagttcctgaaCcacgtcggctcccctccccc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	118727879	AA	AA	118727878	1	1	61	0	1	0	0	0	0	0	0	0	15095	522	18	3		3	SPAG17	1	118727878	5'Flank	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	221517	118727878	130522743	366	68611											
HSD3B2	3284	broad.mit.edu	37	chr1	119976456	119976456	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgggaagcgtgtacagAgggcagatgagggagctcag	17	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119976456	T	T	119976456	1	4	61	0	1	0	0	0	0	0	0	0	7458	319	11	5		5	HSD3B2	1	119976456	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1248578	119976456	129274165	367	68612											
PHGDH	26227	broad.mit.edu	37	chr1	120279974	120279974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggggctggtggcagcgtGggtgaatagattcagccctg	18	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120279974	T	T	120279974	1	4	61	0	1	0	0	0	0	0	0	0	11936	1363	47	2		2	PHGDH	1	120279974	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	303518	120279974	128970647	368	68613											
REG4	83998	broad.mit.edu	37	chr1	120345520	120345520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcttcagcaatgcttacAgaattgaatgagttgaacac	8	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120345520	G	G	120345520	1	3	61	0	1	0	0	0	0	0	0	0	13322	175	7	5		5	REG4	1	120345520	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	65546	120345520	128905101	369	68614											
NBPF7	343505	broad.mit.edu	37	chr1	120380026	120380026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatattatgcaaatcacGcttcacacaagaccaaatca	5	11	4	1	rs141644184	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120380026	T	T	120380026	1	4	61	0	1	0	0	0	0	0	0	0	10293	1102	38	3		3	NBPF7	1	120380026	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34506	120380026	128870595	370	68615											
ADAM30	11085	broad.mit.edu	37	chr1	120437196	120437197	+	Frame_Shift_Ins	INS	-	C	C													tggatagatgatagcctgtgINSccccagcacatgagattttc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120437197	C	C	120437196	7	5	61	1	0	1	1	0	0	0	0	0	248	1306	46	0	612	0	ADAM30	1	120437196	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	57170	120437196	128813425	371	68616											
ADAM30	11085	broad.mit.edu	37	chr1	120437565	120437565	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcgcagtactctgcaagGtcacattcatttccttcctg	7	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120437565	C	C	120437565	3	2	61	1	0	0	0	0	1	0	0	0	248	1252	44	4	981	4	ADAM30	1	120437565	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	369	120437565	128813056	372	68617											
ADAM30	11085	broad.mit.edu	37	chr1	120438854	120438854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatacgagtcaaactcccCttcagggtgaaaaattacat	6	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120438854	A	A	120438854	3	1	61	1	0	0	0	0	1	0	0	0	248	681	24	2	2270	2	ADAM30	1	120438854	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1289	120438854	128811767	373	68618											
NOTCH2	4853	broad.mit.edu	37	chr1	120462321	120462321	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagctctatttgactaaagTtattcttaggggcaaagaat	8	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120462321	G	G	120462321	1	3	61	0	1	0	0	0	0	0	0	0	10643	1740	60	5		5	NOTCH2	1	120462321	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23467	120462321	128788300	374	68619											
NOTCH2	4853	broad.mit.edu	37	chr1	120523842	120523842	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagactcaaaacagaagttcActcttctcgatcaccttcct	4	14	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120523842	G	G	120523842	1	3	61	0	1	0	0	0	0	0	0	0	10643	174	6	5		5	NOTCH2	1	120523842	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	61521	120523842	128726779	375	68620											
NOTCH2	4853	broad.mit.edu	37	chr1	120549926	120549926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgactatccattttctcaCattgtaaatagttaataagg	5	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120549926	A	A	120549926	1	1	61	0	1	0	0	0	0	0	0	0	10643	493	17	3		3	NOTCH2	1	120549926	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26084	120549926	128700695	376	68621											
NOTCH2	4853	broad.mit.edu	37	chr1	120559448	120559448	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatcaggatcttaccatacTtcactgcactggaccctgag	7	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120559448	G	G	120559448	1	3	61	0	1	0	0	0	0	0	0	0	10643	1624	56	5		5	NOTCH2	1	120559448	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9522	120559448	128691173	377	68622											
NBPF9	400818	broad.mit.edu	37	chr1	144612228	144612228	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaggcgggcaaagctGtggggagcggtggagtggaa	21	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144612228	T	T	144612228	1	4	61	0	1	0	0	0	0	0	0	0	10294	1392	48	3		3	NBPF9	1	144612228	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	24052780	144612228	104638393	378	68623											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857518	144857518	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcatgcagagaaaactctcTaaatacagataatatgttta	7	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144857518	A	A	144857518	1	1	61	0	1	0	0	0	0	0	0	0	11737	1537	53	5		5	PDE4DIP	1	144857518	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	245290	144857518	104393103	379	68624											
PDE4DIP	9659	broad.mit.edu	37	chr1	145002719	145002719	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaccccatactgcataCgcatcagggccttaatcatg	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145002719	T	T	145002719	1	4	61	0	1	0	0	0	0	0	0	0	11737	551	19	4		4	PDE4DIP	1	145002719	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	145201	145002719	104247902	380	68625											
PDE4DIP	9659	broad.mit.edu	37	chr1	145021772	145021772	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttatattttagataggtCattccagctgcattctggct	8	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145021772	A	A	145021772	1	1	61	0	1	0	0	0	0	0	0	0	11737	841	29	3		3	PDE4DIP	1	145021772	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19053	145021772	104228849	381	68626											
NBPF9	400818	broad.mit.edu	37	chr1	145061265	145061265	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttctaccaaaggttttcGttttatagtcttcatttgtt	6	6	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145061265	A	A	145061265	1	1	61	0	1	0	0	0	0	0	0	0	10294	1160	40	4		4	NBPF9	1	145061265	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39493	145061265	104189356	382	68627											
NBPF9	400818	broad.mit.edu	37	chr1	145067442	145067442	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcagtcacctggaattctAcaaccagcagagtaggtttc	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145067442	T	T	145067442	1	4	61	0	1	0	0	0	0	0	0	0	10294	406	14	5		5	NBPF9	1	145067442	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6177	145067442	104183179	383	68628											
NBPF9	400818	broad.mit.edu	37	chr1	145068531	145068531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatgccaagtgaaataggCtggagacaaaacaacaaata	8	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145068531	A	A	145068531	1	1	61	0	1	0	0	0	0	0	0	0	10294	812	28	3		3	NBPF9	1	145068531	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1089	145068531	104182090	384	68629											
NBPF9	400818	broad.mit.edu	37	chr1	145070379	145070379	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttgccgtgagccaagattGtgccactgcactccagcctg	12	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145070379	A	A	145070379	1	1	61	0	1	0	0	0	0	0	0	0	10294	1392	48	4		4	NBPF9	1	145070379	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1848	145070379	104180242	385	68630											
NBPF9	400818	broad.mit.edu	37	chr1	145074703	145074703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattagcactgttttaatcCaaattccaattttatgcatg	4	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145074703	A	A	145074703	1	1	61	0	1	0	0	0	0	0	0	0	10294	609	21	2		2	NBPF9	1	145074703	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4324	145074703	104175918	386	68631											
NBPF9	400818	broad.mit.edu	37	chr1	145074783	145074783	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccgttagctcagaggctgGaatcactaggcctggtagtt	12	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145074783	T	T	145074783	1	4	61	0	1	0	0	0	0	0	0	0	10294	1189	41	3		3	NBPF9	1	145074783	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	80	145074783	104175838	387	68632											
NBPF9	400818	broad.mit.edu	37	chr1	145112281	145112281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggattacaggtgtgagCcaccgtgcctggccaactca	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145112281	A	A	145112281	1	1	61	0	1	0	0	0	0	0	0	0	10294	754	26	3		3	NBPF9	1	145112281	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37498	145112281	104138340	388	68633											
NBPF9	400818	broad.mit.edu	37	chr1	145112648	145112648	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatttatctcccagaagtaCattacattacaatgcttcca	4	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145112648	G	G	145112648	1	3	61	0	1	0	0	0	0	0	0	0	10294	493	17	4		4	NBPF9	1	145112648	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	367	145112648	104137973	389	68634											
SEC22B	9554	broad.mit.edu	37	chr1	145116811	145116811	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctccgctgtttgttttcCtcttgccacaatttgctaac	5	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145116811	G	G	145116811	1	3	61	0	1	0	0	0	0	0	0	0	14102	696	24	4		4	SEC22B	1	145116811	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4163	145116811	104133810	390	68635											
NBPF10	100132406	broad.mit.edu	37	chr1	145289950	145289950	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagtttctttatcagcaaaAcagaatcatcccataaacta	3	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145289950	G	G	145289950	1	3	61	0	1	0	0	0	0	0	0	0	10287	58	2	5		5	NBPF10	1	145289950	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	173139	145289950	103960671	391	68636											
NBPF10	100132406	broad.mit.edu	37	chr1	145304090	145304090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaacccgcattcgcttGgccacagtatgtgaaatata	7	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145304090	T	T	145304090	1	4	61	0	1	0	0	0	0	0	0	0	10287	1363	47	2		2	NBPF10	1	145304090	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14140	145304090	103946531	392	68637											
NBPF10	100132406	broad.mit.edu	37	chr1	145311762	145311762	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgattccccctggcttattCtttactttttcctacttttc	3	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145311762	A	A	145311762	1	1	61	0	1	0	0	0	0	0	0	0	10287	928	32	3		3	NBPF10	1	145311762	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7672	145311762	103938859	393	68638											
NBPF10	100132406	broad.mit.edu	37	chr1	145360061	145360061	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcatgttttcagcgaaggTtgaattactcctactgacat	7	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145360061	C	C	145360061	1	2	61	0	1	0	0	0	0	0	0	0	10287	1740	60	5		5	NBPF10	1	145360061	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	48299	145360061	103890560	394	68639											
HFE2	148738	broad.mit.edu	37	chr1	145416854	145416854	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcatctcttcccctcagAtgctggggttcctctttcct	8	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145416854	T	T	145416854	3	4	61	1	0	0	0	0	1	0	0	0	7149	333	12	5	1209	5	HFE2	1	145416854	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	56793	145416854	103833767	395	68640											
LIX1L	128077	broad.mit.edu	37	chr1	145487437	145487437	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtctgctatgtcaccctGcctgggggaagctgctttgg	13	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145487437	T	T	145487437	2	4	61	1	0	0	0	0	0	0	0	1	8906	1306	46	3		3	LIX1L	1	145487437	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	70583	145487437	103763184	396	68641											
ITGA10	8515	broad.mit.edu	37	chr1	145528566	145528566	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaactatttcccccatccCcaggcctgtgcccctctctg	6	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145528566	G	G	145528566	1	3	61	0	1	0	0	0	0	0	0	0	7943	638	22	4		4	ITGA10	1	145528566	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41129	145528566	103722055	397	68642											
ITGA10	8515	broad.mit.edu	37	chr1	145530815	145530815	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcctctcttatatactttCttcttcctcctctcccccca	0	19	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145530815	T	T	145530815	1	4	61	0	1	0	0	0	0	0	0	0	7943	928	32	4		4	ITGA10	1	145530815	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2249	145530815	103719806	398	68643											
ITGA10	8515	broad.mit.edu	37	chr1	145534101	145534101	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagtccttgctgaccctcCaaggaacacttcagccagaa	8	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145534101	G	G	145534101	3	3	61	1	0	0	0	0	1	0	0	0	7943	595	21	4	1660	4	ITGA10	1	145534101	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3286	145534101	103716520	399	68644											
GJA8	2703	broad.mit.edu	37	chr1	147380481	147380481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcgtcaagaagagcagCggcagcaaaggcactaagaa	14	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147380481	A	A	147380481	3	1	61	1	0	0	0	0	1	0	0	0	6469	767	27	3	401	3	GJA8	1	147380481	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1846380	147380481	101870140	400	68645											
NBPF14	25832	broad.mit.edu	37	chr1	148012571	148012571	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaacttccatagggctggCaggagtcaggctgttcaaga	14	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148012571	G	G	148012571	3	3	61	1	0	0	0	0	1	0	0	0	10289	710	25	4	1421	4	NBPF14	1	148012571	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	632090	148012571	101238050	401	68646											
LOC200030	200030	broad.mit.edu	37	chr1	148244738	148244738	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcacccgctgccctctttGgtcctctcgctgtcaccggc	9	20	3	0	rs75356739		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148244738	A	A	148244738	1	1	61	0	1	0	0	0	0	0	0	0	8950	1363	47	4		4	LOC200030	1	148244738	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	232167	148244738	101005883	402	68647											
LOC200030	200030	broad.mit.edu	37	chr1	148349633	148349633	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgttatgaaatggcctcCcaccttcagcgttcccagta	7	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148349633	A	A	148349633	1	1	61	0	1	0	0	0	0	0	0	0	8950	638	22	2		2	LOC200030	1	148349633	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104895	148349633	100900988	403	68648											
NBPF16	728936	broad.mit.edu	37	chr1	148754556	148754556	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagtgtgtcacctggacaAttcactgagctcattctctc	7	12	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148754556	G	G	148754556	1	3	61	0	1	0	0	0	0	0	0	0	10291	116	4	5		5	NBPF16	1	148754556	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	404923	148754556	100496065	404	68649											
OTUD7B	56957	broad.mit.edu	37	chr1	149921119	149921119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttacacgtgaattacccCggtattaaaactaattggct	6	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149921119	A	A	149921119	1	1	61	0	1	0	0	0	0	0	0	0	11413	667	23	1		1	OTUD7B	1	149921119	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1166563	149921119	99329502	405	68650											
TARS2	80222	broad.mit.edu	37	chr1	150461568	150461568	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagaggggaaagcagtaaGtttctttcttatcaggaata	10	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150461568	C	C	150461568	1	2	61	0	1	0	0	0	0	0	0	0	15679	1044	36	4		4	TARS2	1	150461568	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	540449	150461568	98789053	406	68651											
TARS2	80222	broad.mit.edu	37	chr1	150469847	150469847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttaatactacaattgtGtggtctgcagtcggggagca	11	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150469847	T	T	150469847	1	4	61	0	1	0	0	0	0	0	0	0	15679	1392	48	3		3	TARS2	1	150469847	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8279	150469847	98780774	407	68652											
ECM1	1893	broad.mit.edu	37	chr1	150483446	150483446	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccggtcccaagggggctgGggccaccggctggatggctt	18	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150483446	A	A	150483446	4	1	61	1	0	0	0	0	0	1	0	0	4937	1241	43	4	502	4	ECM1	1	150483446	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13599	150483446	98767175	408	68653											
PRUNE	58497	broad.mit.edu	37	chr1	150990687	150990687	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctgcccaggttagttcttGaggactaaaaattccttctc	7	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150990687	A	A	150990687	1	1	61	0	1	0	0	0	0	0	0	0	12746	1305	45	4		4	PRUNE	1	150990687	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	507241	150990687	98259934	409	68654											
PRUNE	58497	broad.mit.edu	37	chr1	150997137	150997137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtgctagaccatcgacCcatcgagccgaaacactgcc	10	14	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150997137	A	A	150997137	3	1	61	1	0	0	0	0	1	0	0	0	12746	623	22	2	400	2	PRUNE	1	150997137	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6450	150997137	98253484	410	68655											
SEMA6C	10500	broad.mit.edu	37	chr1	151110451	151110451	+	Intron	DEL	C	-	-													aacagtctcctttccccaggCccgccctgacctcggagcca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151110451	-	-	151110451	6	5	61	0	1	1	0	1	0	0	0	0	14154	754	26	0		0	SEMA6C	1	151110451	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	113314	151110451	98140170	411	68656											
SEMA6C	10500	broad.mit.edu	37	chr1	151110648	151110648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcctgcctcttcttgggcCtcctgcacccctacctaggc	7	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151110648	A	A	151110648	1	1	61	0	1	0	0	0	0	0	0	0	14154	696	24	2		2	SEMA6C	1	151110648	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	197	151110648	98139973	412	68657											
POGZ	23126	broad.mit.edu	37	chr1	151400443	151400443	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccacttcattgctattttCgcctgtaacaccaggtcgct	8	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151400443	A	A	151400443	4	1	61	1	0	0	0	0	0	1	0	0	12281	893	31	3	3364	3	POGZ	1	151400443	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	289795	151400443	97850178	413	68658											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	61	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-17-Z031-01A-01W-0746-08	342117	151742560	97508061	414	68659											
TDRKH	11022	broad.mit.edu	37	chr1	151748494	151748494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttcccttccaaatccccCtgacaactgccaacagctca	5	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151748494	A	A	151748494	1	1	61	0	1	0	0	0	0	0	0	0	15859	696	24	2		2	TDRKH	1	151748494	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5934	151748494	97502127	415	68660											
TDRKH	11022	broad.mit.edu	37	chr1	151752281	151752281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttttaccaccagttctaCaaacagtaaacctctggtct	6	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151752281	A	A	151752281	1	1	61	0	1	0	0	0	0	0	0	0	15859	493	17	3		3	TDRKH	1	151752281	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3787	151752281	97498340	416	68661											
LINGO4	339398	broad.mit.edu	37	chr1	151773761	151773761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgtcccgtagctgcaCtgagcggatctccagtgtcc	10	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151773761	T	T	151773761	3	4	61	1	0	0	0	0	1	0	0	0	8890	565	20	4	365	4	LINGO4	1	151773761	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21480	151773761	97476860	417	68662											
HRNR	388697	broad.mit.edu	37	chr1	152192919	152192919	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaccatagctggaagactGacgtgagctggagccatgtt	13	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152192919	A	A	152192919	4	1	61	1	0	0	0	0	0	1	0	0	7426	1299	45	4	7370	4	HRNR	1	152192919	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	419158	152192919	97057702	418	68663											
FLG	2312	broad.mit.edu	37	chr1	152277200	152277200	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgagtgctcacctggtAgaggaaagaccctgaacgtc	11	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152277200	G	G	152277200	3	3	61	1	0	0	0	0	1	0	0	0	5979	420	15	5	2027	5	FLG	1	152277200	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	84281	152277200	96973421	419	68664											
FLG	2312	broad.mit.edu	37	chr1	152281913	152281913	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctctgcttgaccctgGgtgtccacgaatggtgtcct	10	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152281913	A	A	152281913	3	1	61	1	0	0	0	0	1	0	0	0	5979	1232	43	4	6740	4	FLG	1	152281913	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4713	152281913	96968708	420	68665											
FLG	2312	broad.mit.edu	37	chr1	152284537	152284537	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggctaacactggatcccTggcgcctgcttgtcctggac	11	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152284537	C	C	152284537	3	2	61	1	0	0	0	0	1	0	0	0	5979	1580	55	5	9364	5	FLG	1	152284537	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2624	152284537	96966084	421	68666											
FLG	2312	broad.mit.edu	37	chr1	152285069	152285069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgaccagcctgtccatGgcctgacactgactgtgtgt	12	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152285069	T	T	152285069	3	4	61	1	0	0	0	0	1	0	0	0	5979	1348	47	2	9896	2	FLG	1	152285069	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	532	152285069	96965552	422	68667											
FLG2	388698	broad.mit.edu	37	chr1	152323416	152323416	+	Missense_Mutation	SNP	T	G	G													gtggatcctggctgtctttgTtgagatccagcttggccctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152323416	G	G	152323416	3	3	61	1	0	0	0	0	1	0	0	0	5980	1722	60	5	333	5	FLG2	1	152323416	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	38347	152323416	96927205	423	68668	316	2									
FLG2	388698	broad.mit.edu	37	chr1	152323426	152323426	+	Missense_Mutation	SNP	G	T	T													gctgtctttgttgagatccaGcttggccctgaatgtgtcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152323426	T	T	152323426	3	4	61	1	0	0	0	0	1	0	0	0	5980	971	34	3	343	3	FLG2	1	152323426	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10	152323426	96927195	424	68669	316	2									
FLG2	388698	broad.mit.edu	37	chr1	152324583	152324583	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtcctgaatgtgtatgTgagccccctgagtgcacttc	12	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152324583	G	G	152324583	2	3	61	1	0	0	0	0	0	0	0	1	5980	1683	59	5		5	FLG2	1	152324583	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1157	152324583	96926038	425	68670											
LCE2B	26239	broad.mit.edu	37	chr1	152659308	152659308	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attatctttcaggttgactaAactctgccaggatgtcttgc	8	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152659308	C	C	152659308	1	2	61	0	1	0	0	0	0	0	0	0	8738	29	1	5		5	LCE2B	1	152659308	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	334725	152659308	96591313	426	68671											
LCE2A	353139	broad.mit.edu	37	chr1	152671302	152671302	+	Intron	DEL	A	-	-													gatttagttttaaaagagatAaaattgccatccttggtttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152671302	-	-	152671302	6	5	61	0	1	1	0	1	0	0	0	0	8737	377	13	0		0	LCE2A	1	152671302	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	11994	152671302	96579319	427	68672											
LCE2A	353139	broad.mit.edu	37	chr1	152671415	152671415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagcagtgccagccccCtcccaagtgccccccaaaat	7	20	0	0	rs112496497		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152671415	A	A	152671415	3	1	61	1	0	0	0	0	1	0	0	0	8737	681	24	2	40	2	LCE2A	1	152671415	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	113	152671415	96579206	428	68673											
KPRP	448834	broad.mit.edu	37	chr1	152731942	152731942	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaagttgagggtggaggAagaaaagctagggaagatgc	17	2	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152731942	C	C	152731942	1	2	61	0	1	0	0	0	0	0	0	0	8507	261	9	5		5	KPRP	1	152731942	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	60527	152731942	96518679	429	68674											
LCE1B	353132	broad.mit.edu	37	chr1	152784985	152784985	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtgcatccccaagtgcccTcccaagtgcctcacccctag	7	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152784985	A	A	152784985	2	1	61	1	0	0	0	0	0	0	0	1	8732	1538	54	5		5	LCE1B	1	152784985	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	53043	152784985	96465636	430	68675											
SPRR3	6707	broad.mit.edu	37	chr1	152975854	152975854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcatcaaggtccctgacCaaggcttcatcaagtttcct	8	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152975854	A	A	152975854	3	1	61	1	0	0	0	0	1	0	0	0	15221	595	21	2	360	2	SPRR3	1	152975854	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	190869	152975854	96274767	431	68676											
PGLYRP4	57115	broad.mit.edu	37	chr1	153310878	153310878	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgctgcacagtcctcagAtctcacggcctccagttcca	8	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153310878	G	G	153310878	1	3	61	0	1	0	0	0	0	0	0	0	11891	348	12	5		5	PGLYRP4	1	153310878	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	335024	153310878	95939743	432	68677											
PGLYRP4	57115	broad.mit.edu	37	chr1	153312843	153312843	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaagaagcccagtgtacCcagacccactcacttataac	7	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153312843	T	T	153312843	1	4	61	0	1	0	0	0	0	0	0	0	11891	638	22	4		4	PGLYRP4	1	153312843	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1965	153312843	95937778	433	68678											
S100A8	6279	broad.mit.edu	37	chr1	153362656	153362656	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagaatgaggaactcctGgaagttaactgcaccatcag	9	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153362656	A	A	153362656	4	1	61	1	0	0	0	0	0	1	0	0	13897	1357	47	4	80	4	S100A8	1	153362656	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49813	153362656	95887965	434	68679											
S100A8	6279	broad.mit.edu	37	chr1	153362849	153362849	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaccaggcagagagcccccGccacacccagcccctcctca	9	21	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153362849	A	A	153362849	1	1	61	0	1	0	0	0	0	0	0	0	13897	1102	38	4		4	S100A8	1	153362849	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	193	153362849	95887772	435	68680											
ILF2	3608	broad.mit.edu	37	chr1	153639859	153639860	+	Intron	INS	-	AG	AG													gctactcgggaggctaaggcINSgggaagatcacttgctgtag					rs12096647	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	153639860	AG	AG	153639859	6	5	61	0	1	1	1	0	0	0	0	0	7781	783	27	0		0	ILF2	1	153639859	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	277010	153639859	95610762	436	68681											
NPR1	4881	broad.mit.edu	37	chr1	153652924	153652924	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccccagctttcctactccTgtctctcccgcagtacctag	6	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153652924	A	A	153652924	1	1	61	0	1	0	0	0	0	0	0	0	10689	1595	55	5		5	NPR1	1	153652924	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13065	153652924	95597697	437	68682											
INTS3	65123	broad.mit.edu	37	chr1	153743132	153743132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaatcataccttcccCctgaacagcctctgcccttc	5	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153743132	A	A	153743132	1	1	61	0	1	0	0	0	0	0	0	0	7849	638	22	2		2	INTS3	1	153743132	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	90208	153743132	95507489	438	68683											
SLC27A3	11000	broad.mit.edu	37	chr1	153748852	153748852	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccccaaggagtcgagttcCaggcctcagacccaagatgg	11	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153748852	G	G	153748852	1	3	61	0	1	0	0	0	0	0	0	0	14641	609	21	4		4	SLC27A3	1	153748852	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5720	153748852	95501769	439	68684											
GATAD2B	57459	broad.mit.edu	37	chr1	153782423	153782423	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaagaaaactgaagagAgaagacagagcggcagaaga	13	4	0	8			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153782423	G	G	153782423	1	3	61	0	1	0	0	0	0	0	0	0	6323	319	11	5		5	GATAD2B	1	153782423	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	33571	153782423	95468198	440	68685											
CRTC2	200186	broad.mit.edu	37	chr1	153920923	153920923	+	Intron	DEL	C	-	-													ccatttcccatcaccacccaCccccattcacctgtgaggat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153920923	-	-	153920923	6	5	61	0	1	1	0	1	0	0	0	0	3932	522	18	0		0	CRTC2	1	153920923	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	138500	153920923	95329698	441	68686											
UBAP2L	9898	broad.mit.edu	37	chr1	154207765	154207765	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggggccgtggccgaggcaGaggtgatcagtttgttgggg	20	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154207765	T	T	154207765	3	4	61	1	0	0	0	0	1	0	0	0	16964	942	33	3	560	3	UBAP2L	1	154207765	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	286842	154207765	95042856	442	68687											
UBAP2L	9898	broad.mit.edu	37	chr1	154228083	154228083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattatgtcttatttccttGttatgttcttgactgaagct	6	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154228083	T	T	154228083	1	4	61	0	1	0	0	0	0	0	0	0	16964	1392	48	3		3	UBAP2L	1	154228083	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20318	154228083	95022538	443	68688											
ATP8B2	57198	broad.mit.edu	37	chr1	154321236	154321236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgtcagcctggtcccGggtgctgtgggtcccttctc	13	14	3	0	rs80098983	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154321236	T	T	154321236	1	4	61	0	1	0	0	0	0	0	0	0	1199	1131	39	1		1	ATP8B2	1	154321236	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	93153	154321236	94929385	444	68689											
TDRD10	126668	broad.mit.edu	37	chr1	154516358	154516358	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcagttcagcctcctgcAggacaggcgttggtccagtc	13	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154516358	T	T	154516358	1	4	61	0	1	0	0	0	0	0	0	0	15853	203	7	5		5	TDRD10	1	154516358	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	195122	154516358	94734263	445	68690											
PBXIP1	57326	broad.mit.edu	37	chr1	154919082	154919082	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccctgtgggcctctaccCccactgaggcacaccccatc	7	20	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154919082	T	T	154919082	2	4	61	1	0	0	0	0	0	0	0	1	11590	610	22	4		4	PBXIP1	1	154919082	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	402724	154919082	94331539	446	68691											
PBXIP1	57326	broad.mit.edu	37	chr1	154926265	154926265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctcttaaggatgggagCtcccttcaggaggggcagaa	14	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154926265	A	A	154926265	1	1	61	0	1	0	0	0	0	0	0	0	11590	812	28	3		3	PBXIP1	1	154926265	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7183	154926265	94324356	447	68692											
PYGO2	90780	broad.mit.edu	37	chr1	154931577	154931577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggcatctggagtgcccCcaccccgcccactgctgttc	10	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154931577	A	A	154931577	3	1	61	1	0	0	0	0	1	0	0	0	12972	623	22	2	325	2	PYGO2	1	154931577	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5312	154931577	94319044	448	68693											
DCST1	149095	broad.mit.edu	37	chr1	155006731	155006731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcccagcccttgcctttgCtgtcccttacacccatacca	5	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155006731	T	T	155006731	1	4	61	0	1	0	0	0	0	0	0	0	4335	812	28	4		4	DCST1	1	155006731	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	75154	155006731	94243890	449	68694											
GBA	2629	broad.mit.edu	37	chr1	155205824	155205824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagctgagaagtctgaggCagctgcaagtgcctcagtag	16	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155205824	A	A	155205824	1	1	61	0	1	0	0	0	0	0	0	0	6328	725	25	3		3	GBA	1	155205824	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	199093	155205824	94044797	450	68695											
PKLR	5313	broad.mit.edu	37	chr1	155265545	155265545	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacggagcgagatgctgGccctagaaccagagattcac	11	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155265545	A	A	155265545	3	1	61	1	0	0	0	0	1	0	0	0	12071	1203	42	4	1474	4	PKLR	1	155265545	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59721	155265545	93985076	451	68696											
ASH1L	55870	broad.mit.edu	37	chr1	155448223	155448223	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acggtgcctgtgtttgtgctCaaccatccaaccataggcca	9	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155448223	G	G	155448223	3	3	61	1	0	0	0	0	1	0	0	0	1045	835	29	4	4560	4	ASH1L	1	155448223	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	182678	155448223	93802398	452	68697											
GON4L	54856	broad.mit.edu	37	chr1	155726844	155726844	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcttccacatcaggcaGggccacttcttcaaagccat	6	15	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155726844	A	A	155726844	2	1	61	1	0	0	0	0	0	0	0	1	6636	991	35	4		4	GON4L	1	155726844	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	278621	155726844	93523777	453	68698											
GON4L	54856	broad.mit.edu	37	chr1	155783541	155783541	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagggggcgggggccccaTgggcactacctcagcactga	17	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155783541	A	A	155783541	3	1	61	1	0	0	0	0	1	0	0	0	6636	1464	51	5	5595	5	GON4L	1	155783541	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	56697	155783541	93467080	454	68699											
SEMA4A	64218	broad.mit.edu	37	chr1	156127927	156127927	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagaagagcaatgaggtaAgtggaggtgggggagtaggg	21	1	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156127927	C	C	156127927	1	2	61	0	1	0	0	0	0	0	0	0	14144	87	3	5		5	SEMA4A	1	156127927	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	344386	156127927	93122694	455	68700											
BGLAP	632	broad.mit.edu	37	chr1	156212028	156212028	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccaccgagacaccatgagAgccctcacactcctcgccct	7	19	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156212028	T	T	156212028	3	4	61	1	0	0	0	0	1	0	0	0	1423	301	11	5	8	5	BGLAP	1	156212028	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	84101	156212028	93038593	456	68701											
VHLL	391104	broad.mit.edu	37	chr1	156269058	156269058	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgttcacccggatttcggCaagagttacaatggaatcag	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156269058	A	A	156269058	1	1	61	0	1	0	0	0	0	0	0	0	17290	725	25	3		3	VHLL	1	156269058	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	57030	156269058	92981563	457	68702											
IQGAP3	128239	broad.mit.edu	37	chr1	156506759	156506759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactgacatcctaccaggCcacacacagacttgcacgcc	6	18	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156506759	A	A	156506759	1	1	61	0	1	0	0	0	0	0	0	0	7886	754	26	3		3	IQGAP3	1	156506759	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	237701	156506759	92743862	458	68703											
IQGAP3	128239	broad.mit.edu	37	chr1	156514801	156514801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctctgcccgcggccacCtgggcagcaggtcactaatg	11	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156514801	A	A	156514801	1	1	61	0	1	0	0	0	0	0	0	0	7886	696	24	2		2	IQGAP3	1	156514801	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8042	156514801	92735820	459	68704											
TTC24	164118	broad.mit.edu	37	chr1	156552367	156552367	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaccagtgggggagagctgGaagtgcaggagatgggacag	20	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156552367	T	T	156552367	1	4	61	0	1	0	0	0	0	0	0	0	16818	1189	41	3		3	TTC24	1	156552367	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37566	156552367	92698254	460	68705											
NES	10763	broad.mit.edu	37	chr1	156642581	156642581	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcagggctgaggggtggtgCcaaggaggcatggtcctctg	19	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156642581	G	G	156642581	3	3	61	1	0	0	0	0	1	0	0	0	10432	739	26	4	3470	4	NES	1	156642581	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	90214	156642581	92608040	461	68706											
HDGF	3068	broad.mit.edu	37	chr1	156715008	156715008	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacagcccggcatgaaaGgggcaccaacaccacctcac	9	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156715008	A	A	156715008	1	1	61	0	1	0	0	0	0	0	0	0	7085	1015	35	4		4	HDGF	1	156715008	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	72427	156715008	92535613	462	68707											
SH2D2A	9047	broad.mit.edu	37	chr1	156776960	156776960	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttatcctcaccaagctcaGacttaccgcctactgaggag	8	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156776960	T	T	156776960	1	4	61	0	1	0	0	0	0	0	0	0	14345	957	33	3		3	SH2D2A	1	156776960	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	61952	156776960	92473661	463	68708											
INSRR	3645	broad.mit.edu	37	chr1	156815208	156815208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccttccaaggggatctGgggaggccaggagtagccct	15	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156815208	T	T	156815208	1	4	61	0	1	0	0	0	0	0	0	0	7844	1363	47	2		2	INSRR	1	156815208	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38248	156815208	92435413	464	68709											
NTRK1	4914	broad.mit.edu	37	chr1	156849054	156849054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctgcattttgtgcaccGggacctggccacacgcaact	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156849054	T	T	156849054	3	4	61	1	0	0	0	0	1	0	0	0	10801	1116	39	1	2134	1	NTRK1	1	156849054	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33846	156849054	92401567	465	68710											
ETV3L	440695	broad.mit.edu	37	chr1	157069148	157069148	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacgactcggctttgtaGgcccaatcagggaaggccaa	15	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157069148	T	T	157069148	2	4	61	1	0	0	0	0	0	0	0	1	5322	987	35	2		2	ETV3L	1	157069148	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	220094	157069148	92181473	466	68711											
FCRL5	83416	broad.mit.edu	37	chr1	157485384	157485384	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctggggcagcctaaatcTtcccacttcaatgctgcttc	9	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157485384	G	G	157485384	1	3	61	0	1	0	0	0	0	0	0	0	5855	1624	56	5		5	FCRL5	1	157485384	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	416236	157485384	91765237	467	68712											
FCRL5	83416	broad.mit.edu	37	chr1	157497566	157497566	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggtgacatcctcatgatAaaaccagtacaggattgggg	12	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157497566	G	G	157497566	3	3	61	1	0	0	0	0	1	0	0	0	5855	362	13	5	1168	5	FCRL5	1	157497566	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12182	157497566	91753055	468	68713											
FCRL5	83416	broad.mit.edu	37	chr1	157508979	157508979	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcagagagaagctgatGgccactcctcctgcagagtt	12	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157508979	T	T	157508979	2	4	61	1	0	0	0	0	0	0	0	1	5855	1335	47	2		2	FCRL5	1	157508979	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11413	157508979	91741642	469	68714											
FCRL4	83417	broad.mit.edu	37	chr1	157548295	157548295	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctcccagctgagtagtctgGatctcagagtataccaaatc	8	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157548295	C	C	157548295	3	2	61	1	0	0	0	0	1	0	0	0	5854	1164	41	4	161	4	FCRL4	1	157548295	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39316	157548295	91702326	470	68715											
FCRL4	83417	broad.mit.edu	37	chr1	157558827	157558827	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttaaactcaagtttcagTagtagtttgaaaaacatttg	6	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157558827	A	A	157558827	1	1	61	0	1	0	0	0	0	0	0	0	5854	1653	57	5		5	FCRL4	1	157558827	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10532	157558827	91691794	471	68716											
FCRL4	83417	broad.mit.edu	37	chr1	157559356	157559356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgggagatccctaagatgCccccggatgacttctgttta	10	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157559356	A	A	157559356	1	1	61	0	1	0	0	0	0	0	0	0	5854	754	26	3		3	FCRL4	1	157559356	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	529	157559356	91691265	472	68717											
FCRL4	83417	broad.mit.edu	37	chr1	157567789	157567789	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagacaagccaggtcagcCcagattgccaaagcagcact	11	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157567789	A	A	157567789	1	1	61	0	1	0	0	0	0	0	0	0	5854	638	22	2		2	FCRL4	1	157567789	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8433	157567789	91682832	473	68718											
FCRL3	115352	broad.mit.edu	37	chr1	157665371	157665371	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggccctgggagccctgaAggtgaggacagggtgagata	19	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157665371	C	C	157665371	3	2	61	1	0	0	0	0	1	0	0	0	5853	72	3	5	1077	5	FCRL3	1	157665371	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	97582	157665371	91585250	474	68719											
FCRL1	115350	broad.mit.edu	37	chr1	157771714	157771714	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagctatacctgtgaagtTgagtgtcaccgcctcactgc	10	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157771714	G	G	157771714	3	3	61	1	0	0	0	0	1	0	0	0	5851	1812	63	5	506	5	FCRL1	1	157771714	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	106343	157771714	91478907	475	68720											
FCRL1	115350	broad.mit.edu	37	chr1	157771895	157771895	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggatcggaggagagcctctCagggcctcacagtgaagctc	14	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157771895	G	G	157771895	2	3	61	1	0	0	0	0	0	0	0	1	5851	813	29	4		4	FCRL1	1	157771895	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	181	157771895	91478726	476	68721											
FCRL1	115350	broad.mit.edu	37	chr1	157773983	157773983	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtctcagcacttgccaAcaagactcaaagaaacagcc	7	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157773983	C	C	157773983	1	2	61	0	1	0	0	0	0	0	0	0	5851	58	2	5		5	FCRL1	1	157773983	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2088	157773983	91476638	477	68722											
FCRL1	115350	broad.mit.edu	37	chr1	157776892	157776892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaggaagtgcaactcacCggcaggttcacagagtggag	14	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157776892	T	T	157776892	3	4	61	1	0	0	0	0	1	0	0	0	5851	666	23	4	1343	4	FCRL1	1	157776892	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2909	157776892	91473729	478	68723											
FCRL1	115350	broad.mit.edu	37	chr1	157790843	157790843	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagatgctgtcaggcaatgAtgtctaagtccaggtatcca	10	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157790843	T	T	157790843	1	4	61	0	1	0	0	0	0	0	0	0	5851	348	12	5		5	FCRL1	1	157790843	5'Flank	SNP	A	TCGA-17-Z031-01A-01W-0746-08	13951	157790843	91459778	479	68724											
CD5L	922	broad.mit.edu	37	chr1	157804351	157804351	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgcttgttgcagcgtttTtgagtcagtacagccctccc	10	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157804351	G	G	157804351	3	3	61	1	0	0	0	0	1	0	0	0	3057	1838	64	5	491	5	CD5L	1	157804351	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13508	157804351	91446270	480	68725											
KIRREL	55243	broad.mit.edu	37	chr1	157972569	157972569	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagggggccacagatgtgaGgctcaggggctgcggggcct	21	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157972569	A	A	157972569	1	1	61	0	1	0	0	0	0	0	0	0	8395	1015	35	4		4	KIRREL	1	157972569	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	168218	157972569	91278052	481	68726											
KIRREL	55243	broad.mit.edu	37	chr1	158020154	158020154	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgaggcccagagaggtgaAgtgaattccccaaggtcaca	12	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158020154	C	C	158020154	1	2	61	0	1	0	0	0	0	0	0	0	8395	87	3	5		5	KIRREL	1	158020154	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	47585	158020154	91230467	482	68727											
CD1A	909	broad.mit.edu	37	chr1	158224512	158224512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccaggtgatggcaatgCagacggtaagaactctgaca	11	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158224512	A	A	158224512	3	1	61	1	0	0	0	0	1	0	0	0	3004	710	25	3	55	3	CD1A	1	158224512	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	204358	158224512	91026109	483	68728											
CD1A	909	broad.mit.edu	37	chr1	158227028	158227028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtagatgcaggaggatGctgagggttaactgaagaat	14	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158227028	T	T	158227028	1	4	61	0	1	0	0	0	0	0	0	0	3004	1334	46	3		3	CD1A	1	158227028	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2516	158227028	91023593	484	68729											
CD1C	911	broad.mit.edu	37	chr1	158259571	158259571	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgccatacaccactttGtctaaggcagttgaggaagg	10	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158259571	A	A	158259571	1	1	61	0	1	0	0	0	0	0	0	0	3006	1392	48	4		4	CD1C	1	158259571	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32543	158259571	90991050	485	68730											
CD1B	910	broad.mit.edu	37	chr1	158298932	158298932	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcatattcctggccacCatatatccatcctttgatcc	3	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158298932	A	A	158298932	1	1	61	0	1	0	0	0	0	0	0	0	3005	609	21	2		2	CD1B	1	158298932	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	39361	158298932	90951689	486	68731											
CD1B	910	broad.mit.edu	37	chr1	158300659	158300659	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtagactcggaatatctcCtctaactcagcaacctcctt	5	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158300659	T	T	158300659	2	4	61	1	0	0	0	0	0	0	0	1	3005	680	24	4		4	CD1B	1	158300659	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1727	158300659	90949962	487	68732											
CD1B	910	broad.mit.edu	37	chr1	158300748	158300748	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagtcgctatcccagccatGaatctgcaaatcatccaacc	6	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158300748	T	T	158300748	3	4	61	1	0	0	0	0	1	0	0	0	3005	1290	45	3	855	3	CD1B	1	158300748	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	89	158300748	90949873	488	68733											
OR10K2	391107	broad.mit.edu	37	chr1	158389908	158389908	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggcacagccatagtggAcagtgacaataatgaggtga	14	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158389908	G	G	158389908	3	3	61	1	0	0	0	0	1	0	0	0	11008	275	10	5	191	5	OR10K2	1	158389908	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	89160	158389908	90860713	489	68734											
OR10K2	391107	broad.mit.edu	37	chr1	158390136	158390136	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacagaagaagtgatgtAgttgattggaggaataaaaa	12	2	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158390136	T	T	158390136	3	4	61	1	0	0	0	0	1	0	0	0	11008	420	15	5	419	5	OR10K2	1	158390136	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	228	158390136	90860485	490	68735											
OR10K1	391109	broad.mit.edu	37	chr1	158436204	158436204	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaccatccttaccccattgTtcaatccaatgatttatagt	3	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158436204	G	G	158436204	3	3	61	1	0	0	0	0	1	0	0	0	11007	1725	60	5	855	5	OR10K1	1	158436204	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	46068	158436204	90814417	491	68736											
OR6Y1	391112	broad.mit.edu	37	chr1	158517482	158517482	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctggttggtcatgatgacTgggtagcgtagtggattaca	15	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158517482	C	C	158517482	2	2	61	1	0	0	0	0	0	0	0	1	11307	1567	55	5		5	OR6Y1	1	158517482	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	81278	158517482	90733139	492	68737											
SPTA1	6708	broad.mit.edu	37	chr1	158612234	158612234	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattgccatcacaagcgctAcactcaatcagggagttccc	7	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158612234	G	G	158612234	2	3	61	1	0	0	0	0	0	0	0	1	15234	389	14	5		5	SPTA1	1	158612234	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	94752	158612234	90638387	493	68738											
SPTA1	6708	broad.mit.edu	37	chr1	158612497	158612497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagtctctgagagcaggCatggtagcctcaacagtcag	12	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158612497	A	A	158612497	1	1	61	0	1	0	0	0	0	0	0	0	15234	725	25	3		3	SPTA1	1	158612497	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	263	158612497	90638124	494	68739											
SPTA1	6708	broad.mit.edu	37	chr1	158614264	158614264	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttacacctctttcaggatCatgacacaaagggttttgca	8	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158614264	A	A	158614264	1	1	61	0	1	0	0	0	0	0	0	0	15234	841	29	3		3	SPTA1	1	158614264	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1767	158614264	90636357	495	68740											
SPTA1	6708	broad.mit.edu	37	chr1	158632543	158632543	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttggatccaggcctcctCatcctctgtgtctctacaaa	6	15	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158632543	A	A	158632543	4	1	61	1	0	0	0	0	0	1	0	0	15234	835	29	3	4990	3	SPTA1	1	158632543	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18279	158632543	90618078	496	68741											
SPTA1	6708	broad.mit.edu	37	chr1	158641213	158641213	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctgcactgcccagtgAgtttcccagatcctcgtttt	9	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158641213	T	T	158641213	3	4	61	1	0	0	0	0	1	0	0	0	15234	304	11	5	5904	5	SPTA1	1	158641213	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8670	158641213	90609408	497	68742											
SPTA1	6708	broad.mit.edu	37	chr1	158646170	158646170	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggagaggtataaaaaatCatatgaataataataattta	8	1	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158646170	A	A	158646170	1	1	61	0	1	0	0	0	0	0	0	0	15234	841	29	3		3	SPTA1	1	158646170	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4957	158646170	90604451	498	68743											
SPTA1	6708	broad.mit.edu	37	chr1	158653253	158653253	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttgattttgtttgcacctCtgcttcaagggattgatgct	9	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158653253	A	A	158653253	4	1	61	1	0	0	0	0	0	1	0	0	15234	922	32	3	7161	3	SPTA1	1	158653253	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7083	158653253	90597368	499	68744											
OR6K3	391114	broad.mit.edu	37	chr1	158687131	158687131	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataagtgtcgctgaaacgcaAgtacatgagtgatacactgc	10	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158687131	C	C	158687131	3	2	61	1	0	0	0	0	1	0	0	0	11297	69	3	5	174	5	OR6K3	1	158687131	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	33878	158687131	90563490	500	68745											
OR6N2	81442	broad.mit.edu	37	chr1	158746545	158746545	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagctttaatgatttccttgTtacgaagactgtagataatt	7	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158746545	G	G	158746545	3	3	61	1	0	0	0	0	1	0	0	0	11301	1725	60	5	75	5	OR6N2	1	158746545	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	59414	158746545	90504076	501	68746											
PYHIN1	149628	broad.mit.edu	37	chr1	158913695	158913695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaaaaggagataagcttcGactcttctgctttcgactga	9	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158913695	T	T	158913695	3	4	61	1	0	0	0	0	1	0	0	0	12973	1058	37	3	1136	3	PYHIN1	1	158913695	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	167150	158913695	90336926	502	68747											
CADM3	57863	broad.mit.edu	37	chr1	159161833	159161833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcaatggtctaaccctGctcagcagactctctacttt	6	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159161833	T	T	159161833	3	4	61	1	0	0	0	0	1	0	0	0	2594	1319	46	3	308	3	CADM3	1	159161833	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	248138	159161833	90088788	503	68748											
CADM3	57863	broad.mit.edu	37	chr1	159163278	159163278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaaagacacagccaccCtaaactgtcagtcttctggg	10	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159163278	A	A	159163278	3	1	61	1	0	0	0	0	1	0	0	0	2594	680	24	2	568	2	CADM3	1	159163278	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1445	159163278	90087343	504	68749											
DARC	2532	broad.mit.edu	37	chr1	159175960	159175960	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggccaggcccctggatgaAtatcctgtgggcctggttta	15	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159175960	T	T	159175960	3	4	61	1	0	0	0	0	1	0	0	0	4273	101	4	5	764	5	DARC	1	159175960	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12682	159175960	90074661	505	68750											
DARC	2532	broad.mit.edu	37	chr1	159176115	159176115	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaagccctggcaattttgCactgtgtggctacgcccctg	11	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159176115	G	G	159176115	3	3	61	1	0	0	0	0	1	0	0	0	4273	710	25	4	919	4	DARC	1	159176115	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	155	159176115	90074506	506	68751											
OR10J3	441911	broad.mit.edu	37	chr1	159284542	159284542	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggaccaaggctttcaGtaaaaagcatgtccatcctc	9	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159284542	T	T	159284542	1	4	61	0	1	0	0	0	0	0	0	0	11005	1044	36	3		3	OR10J3	1	159284542	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	108427	159284542	89966079	507	68752											
FCRL6	343413	broad.mit.edu	37	chr1	159776626	159776626	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctagggtgacacaagcctcAgcagtgggactctaggcctc	12	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159776626	T	T	159776626	1	4	61	0	1	0	0	0	0	0	0	0	5856	203	7	5		5	FCRL6	1	159776626	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	492084	159776626	89473995	508	68753											
FCRL6	343413	broad.mit.edu	37	chr1	159779402	159779402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtcagaacaggatgctgGgaactactcctgcgaggctg	14	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159779402	T	T	159779402	3	4	61	1	0	0	0	0	1	0	0	0	5856	1232	43	2	833	2	FCRL6	1	159779402	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2776	159779402	89471219	509	68754											
VSIG8	391123	broad.mit.edu	37	chr1	159825855	159825855	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacgatgccgatgatcacGcctatacgccgggagtctgt	13	11	2	1	rs148311082	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159825855	T	T	159825855	2	4	61	1	0	0	0	0	0	0	0	1	17353	1074	38	3		3	VSIG8	1	159825855	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46453	159825855	89424766	510	68755											
IGSF9	57549	broad.mit.edu	37	chr1	159907436	159907436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagatccccatcctcctcCtccccgtccttctccaccac	3	23	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159907436	T	T	159907436	1	4	61	0	1	0	0	0	0	0	0	0	7675	696	24	4		4	IGSF9	1	159907436	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	81581	159907436	89343185	511	68756											
ATP1A4	480	broad.mit.edu	37	chr1	160143215	160143215	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaagggttgaaatcacagTagcatggtttttggtctaca	10	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160143215	A	A	160143215	1	1	61	0	1	0	0	0	0	0	0	0	1135	1653	57	5		5	ATP1A4	1	160143215	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	235779	160143215	89107406	512	68757											
COPA	1314	broad.mit.edu	37	chr1	160287043	160287044	+	Intron	INS	-	A	A													gtagttcttcgatctgaaagINSaaaaaaacactaatgtggta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160287044	A	A	160287043	6	5	61	0	1	1	1	0	0	0	0	0	3759	957	33	0		0	COPA	1	160287043	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	143828	160287043	88963578	513	68758											
COPA	1314	broad.mit.edu	37	chr1	160304968	160304968	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacatgggttctcaaggatCaaataaagattactatgggg	10	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160304968	T	T	160304968	1	4	61	0	1	0	0	0	0	0	0	0	3759	841	29	4		4	COPA	1	160304968	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17925	160304968	88945653	514	68759											
SLAMF6	114836	broad.mit.edu	37	chr1	160465812	160465812	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attggaatacatgtatatttTtcagtccatatggaattaaa	6	4	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160465812	G	G	160465812	1	3	61	0	1	0	0	0	0	0	0	0	14481	1856	64	5		5	SLAMF6	1	160465812	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	160844	160465812	88784809	515	68760											
SLAMF6	114836	broad.mit.edu	37	chr1	160472993	160472993	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttctcaaagttgttctaAgagaagtagatctcatagaa	7	5	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160472993	G	G	160472993	1	3	61	0	1	0	0	0	0	0	0	0	14481	87	3	5		5	SLAMF6	1	160472993	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	7181	160472993	88777628	516	68761											
SLAMF1	6504	broad.mit.edu	37	chr1	160582354	160582354	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagctgggaaggagtcaAgtttcttctgaagaggctac	13	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160582354	C	C	160582354	3	2	61	1	0	0	0	0	1	0	0	0	14480	72	3	5	134	5	SLAMF1	1	160582354	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	109361	160582354	88668267	517	68762											
SLAMF1	6504	broad.mit.edu	37	chr1	160585493	160585493	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaggtcttcacagatgtcAagataaggatttcaaaataa	7	5	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160585493	T	T	160585493	1	4	61	0	1	0	0	0	0	0	0	0	14480	145	5	5		5	SLAMF1	1	160585493	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3139	160585493	88665128	518	68763											
CD48	962	broad.mit.edu	37	chr1	160650908	160650908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccacactgtgcaaggagGctgaataggacccccagcct	10	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160650908	T	T	160650908	1	4	61	0	1	0	0	0	0	0	0	0	3050	1218	42	3		3	CD48	1	160650908	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	65415	160650908	88599713	519	68764											
LY9	4063	broad.mit.edu	37	chr1	160783596	160783596	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggaggctccattcttaccGtctcccgaacaccatgtgac	8	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160783596	C	C	160783596	3	2	61	1	0	0	0	0	1	0	0	0	9189	1145	40	4	767	4	LY9	1	160783596	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132688	160783596	88467025	520	68765											
CD244	51744	broad.mit.edu	37	chr1	160801396	160801396	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggacttgaatctagttcTtctggctccaattccagtac	9	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160801396	G	G	160801396	1	3	61	0	1	0	0	0	0	0	0	0	3017	1624	56	5		5	CD244	1	160801396	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17800	160801396	88449225	521	68766											
ITLN2	142683	broad.mit.edu	37	chr1	160920575	160920575	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggtccacatgtgcagcctCagctgggctgagagctctgg	14	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160920575	T	T	160920575	1	4	61	0	1	0	0	0	0	0	0	0	7981	841	29	4		4	ITLN2	1	160920575	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	119179	160920575	88330046	522	68767											
PVRL4	81607	broad.mit.edu	37	chr1	161042763	161042763	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggtcatggtgggatcagaGgccaggcgtaagcaggggta	19	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161042763	C	C	161042763	1	2	61	0	1	0	0	0	0	0	0	0	12950	1015	35	4		4	PVRL4	1	161042763	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	122188	161042763	88207858	523	68768											
SDHC	6391	broad.mit.edu	37	chr1	161326393	161326393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattgtatgaggtgccagGggtcccagttttatgtatca	12	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161326393	T	T	161326393	1	4	61	0	1	0	0	0	0	0	0	0	14079	1247	43	2		2	SDHC	1	161326393	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	283630	161326393	87924228	524	68769											
FCGR2A	2212	broad.mit.edu	37	chr1	161480037	161480037	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaccaacaagtaggggccaGagcttggagccctcacgtcc	12	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161480037	A	A	161480037	1	1	61	0	1	0	0	0	0	0	0	0	5838	957	33	4		4	FCGR2A	1	161480037	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	153644	161480037	87770584	525	68770											
FCGR2A	2212	broad.mit.edu	37	chr1	161482583	161482583	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcagctgtgcttgcagCaaggttgcacgtccactggc	12	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161482583	T	T	161482583	1	4	61	0	1	0	0	0	0	0	0	0	5838	725	25	4		4	FCGR2A	1	161482583	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2546	161482583	87768038	526	68771											
HSPA6	3310	broad.mit.edu	37	chr1	161496391	161496391	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgattgaatggcccttcGtgataagtcagctgtgactg	13	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161496391	T	T	161496391	1	4	61	0	1	0	0	0	0	0	0	0	7484	1160	40	3		3	HSPA6	1	161496391	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13808	161496391	87754230	527	68772											
FCGR2C	9103	broad.mit.edu	37	chr1	161563211	161563211	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctaacctcctgtgtgcccctCccagctctctcaggataccc	6	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161563211	T	T	161563211	1	4	61	0	1	0	0	0	0	0	0	0	5840	870	30	4		4	FCGR2C	1	161563211	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66820	161563211	87687410	528	68773											
FCGR2B	2213	broad.mit.edu	37	chr1	161643419	161643419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatggaccgttcaaggctGtgctccatagagtaatgatg	12	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161643419	T	T	161643419	1	4	61	0	1	0	0	0	0	0	0	0	5839	1392	48	3		3	FCGR2B	1	161643419	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	80208	161643419	87607202	529	68774											
FCGR2B	2213	broad.mit.edu	37	chr1	161647029	161647029	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttgctttggctctagttTgggcgttggttttgcagcct	13	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161647029	A	A	161647029	1	1	61	0	1	0	0	0	0	0	0	0	5839	1827	63	5		5	FCGR2B	1	161647029	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3610	161647029	87603592	530	68775											
DUSP12	11266	broad.mit.edu	37	chr1	161726734	161726734	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatcacaaacaggaaaaatAtgaacatgatattttatagc	7	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161726734	G	G	161726734	3	3	61	1	0	0	0	0	1	0	0	0	4852	439	16	5	1042	5	DUSP12	1	161726734	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	79705	161726734	87523887	531	68776											
LMX1A	4009	broad.mit.edu	37	chr1	165174910	165174910	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacaagataaatggaagtgTcaataatgaatatgcatgaa	8	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165174910	A	A	165174910	1	1	61	0	1	0	0	0	0	0	0	0	8935	1682	58	5		5	LMX1A	1	165174910	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3448176	165174910	84075711	532	68777											
LMX1A	4009	broad.mit.edu	37	chr1	165182696	165182696	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttcaggagagtctatcaCaccctggccacagcttagtg	10	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165182696	G	G	165182696	1	3	61	0	1	0	0	0	0	0	0	0	8935	493	17	4		4	LMX1A	1	165182696	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7786	165182696	84067925	533	68778											
TMCO1	54499	broad.mit.edu	37	chr1	165712568	165712568	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaaaagaaaaaaaaaaaaAaagaattgttatctttggaa	5	2	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165712568	C	C	165712568	1	2	61	0	1	0	0	0	0	0	0	0	16118	29	1	5		5	TMCO1	1	165712568	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	529872	165712568	83538053	534	68779											
UCK2	7371	broad.mit.edu	37	chr1	165865257	165865257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacccttggctctttggtGgtggtccgagggctctgtaa	13	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165865257	T	T	165865257	1	4	61	0	1	0	0	0	0	0	0	0	17050	1363	47	2		2	UCK2	1	165865257	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	152689	165865257	83385364	535	68780											
UCK2	7371	broad.mit.edu	37	chr1	165865547	165865547	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttgtggatacagatgcGgacacccggctctcacgcag	11	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165865547	T	T	165865547	2	4	61	1	0	0	0	0	0	0	0	1	17050	1103	39	1		1	UCK2	1	165865547	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	290	165865547	83385074	536	68781											
UCK2	7371	broad.mit.edu	37	chr1	165865709	165865709	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtcgcatggtccagcCcggctgcgtcagtccagccc	13	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165865709	G	G	165865709	1	3	61	0	1	0	0	0	0	0	0	0	17050	638	22	4		4	UCK2	1	165865709	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	162	165865709	83384912	537	68782											
FAM78B	149297	broad.mit.edu	37	chr1	166039936	166039936	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgtaccaagggtagctcaCcccatctgagtcactgatgg	10	14	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166039936	G	G	166039936	3	3	61	1	0	0	0	0	1	0	0	0	5680	507	18	4	461	4	FAM78B	1	166039936	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	174227	166039936	83210685	538	68783											
FAM78B	149297	broad.mit.edu	37	chr1	166063260	166063260	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	20	1	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166063260	C	C	166063260	1	2	61	0	1	0	0	0	0	0	0	0	5680	1392	48	4		4	FAM78B	1	166063260	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23324	166063260	83187361	539	68784											
ILDR2	387597	broad.mit.edu	37	chr1	166901278	166901278	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagccacaggagtgaataAggtttcccagggagaggacc	14	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166901278	C	C	166901278	1	2	61	0	1	0	0	0	0	0	0	0	7780	87	3	5		5	ILDR2	1	166901278	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	838018	166901278	82349343	540	68785											
ILDR2	387597	broad.mit.edu	37	chr1	166925953	166925953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctaagatgaaaatgtcacCtgttgttttcacttacccaa	6	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166925953	A	A	166925953	1	1	61	0	1	0	0	0	0	0	0	0	7780	696	24	2		2	ILDR2	1	166925953	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24675	166925953	82324668	541	68786											
MAEL	84944	broad.mit.edu	37	chr1	166974517	166974517	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggcaagatctacaacttcTcactgtagaggaccttgtag	9	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166974517	G	G	166974517	3	3	61	1	0	0	0	0	1	0	0	0	9242	1551	54	5	758	5	MAEL	1	166974517	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	48564	166974517	82276104	542	68787											
GPA33	10223	broad.mit.edu	37	chr1	167024494	167024494	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgaccagccatggcccagGaatattcttcaggatggagg	13	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167024494	T	T	167024494	1	4	61	0	1	0	0	0	0	0	0	0	6651	1189	41	3		3	GPA33	1	167024494	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49977	167024494	82226127	543	68788											
GPA33	10223	broad.mit.edu	37	chr1	167058135	167058135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcctccctctctcaggcCctggagcatcctccctgcct	7	20	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167058135	A	A	167058135	1	1	61	0	1	0	0	0	0	0	0	0	6651	638	22	2		2	GPA33	1	167058135	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33641	167058135	82192486	544	68789											
GPA33	10223	broad.mit.edu	37	chr1	167059341	167059341	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgggcactggtccggaaTgtgtaattctggcccagcag	13	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167059341	A	A	167059341	1	1	61	0	1	0	0	0	0	0	0	0	6651	1479	51	5		5	GPA33	1	167059341	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1206	167059341	82191280	545	68790											
DUSP27	92235	broad.mit.edu	37	chr1	167083060	167083060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaatgcaatcaaaagctGggtggaagcaaagtccagtg	13	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167083060	T	T	167083060	1	4	61	0	1	0	0	0	0	0	0	0	4864	1363	47	2		2	DUSP27	1	167083060	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23719	167083060	82167561	546	68791											
DUSP27	92235	broad.mit.edu	37	chr1	167096180	167096180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggtgggcagtgagaaCaaggaggaggtggtggagct	20	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167096180	A	A	167096180	3	1	61	1	0	0	0	0	1	0	0	0	4864	477	17	3	1830	3	DUSP27	1	167096180	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13120	167096180	82154441	547	68792											
DUSP27	92235	broad.mit.edu	37	chr1	167097596	167097596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggaagagtcatccaaGtcagacttctctgaatttgg	11	7	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167097596	T	T	167097596	3	4	61	1	0	0	0	0	1	0	0	0	4864	1020	36	3	3246	3	DUSP27	1	167097596	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1416	167097596	82153025	548	68793											
POU2F1	5451	broad.mit.edu	37	chr1	167315136	167315136	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctggaataagtggctcacAcctgtaatcccaacactttg	8	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167315136	T	T	167315136	1	4	61	0	1	0	0	0	0	0	0	0	12367	174	6	5		5	POU2F1	1	167315136	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	217540	167315136	81935485	549	68794											
RCSD1	92241	broad.mit.edu	37	chr1	167627736	167627736	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaatggtgcaatcttggctCtctgcaacctccgcctcctg	9	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167627736	G	G	167627736	1	3	61	0	1	0	0	0	0	0	0	0	13293	928	32	4		4	RCSD1	1	167627736	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	312600	167627736	81622885	550	68795											
ADCY10	55811	broad.mit.edu	37	chr1	167803366	167803366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattcagcagggattgagcCcacagaagggccattgcccc	12	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167803366	A	A	167803366	1	1	61	0	1	0	0	0	0	0	0	0	293	638	22	2		2	ADCY10	1	167803366	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	175630	167803366	81447255	551	68796											
ADCY10	55811	broad.mit.edu	37	chr1	167815160	167815160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccttctacctaacataGgtcaattctttgatctagat	5	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167815160	T	T	167815160	1	4	61	0	1	0	0	0	0	0	0	0	293	1015	35	2		2	ADCY10	1	167815160	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11794	167815160	81435461	552	68797											
ADCY10	55811	broad.mit.edu	37	chr1	167825445	167825445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcacattgaggtcaagaCagatcttgttggagatgtcg	12	7	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167825445	A	A	167825445	3	1	61	1	0	0	0	0	1	0	0	0	293	478	17	3	2771	3	ADCY10	1	167825445	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10285	167825445	81425176	553	68798											
ADCY10	55811	broad.mit.edu	37	chr1	167829163	167829163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatgagaatattgagtatGggaaaatagcaaagggaact	11	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167829163	T	T	167829163	1	4	61	0	1	0	0	0	0	0	0	0	293	1363	47	2		2	ADCY10	1	167829163	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3718	167829163	81421458	554	68799											
C1orf114	57821	broad.mit.edu	37	chr1	169383666	169383666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgggggaagacaataaGcatgcagaagatcttaacaa	10	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169383666	T	T	169383666	1	4	61	0	1	0	0	0	0	0	0	0	2007	986	34	3		3	C1orf114	1	169383666	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1554503	169383666	79866955	555	68800											
F5	2153	broad.mit.edu	37	chr1	169489849	169489849	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatatctagccacaataggTgggtcaaactgattctcttt	7	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169489849	A	A	169489849	2	1	61	1	0	0	0	0	0	0	0	1	5391	1683	59	5		5	F5	1	169489849	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	106183	169489849	79760772	556	68801											
F5	2153	broad.mit.edu	37	chr1	169513503	169513503	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagaaattcaaagcaagcTtcctctgtgagtgtccagac	8	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169513503	G	G	169513503	1	3	61	0	1	0	0	0	0	0	0	0	5391	1624	56	5		5	F5	1	169513503	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23654	169513503	79737118	557	68802											
SELP	6403	broad.mit.edu	37	chr1	169559394	169559394	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggatcttaccttaaggacTcgggtcaaatgcagcgtttg	12	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169559394	G	G	169559394	3	3	61	1	0	0	0	0	1	0	0	0	14132	1551	54	5	11	5	SELP	1	169559394	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	45891	169559394	79691227	558	68803											
SELP	6403	broad.mit.edu	37	chr1	169572650	169572650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcatgatgcttcatcaCcagttagagattgtagaggt	9	6	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169572650	A	A	169572650	1	1	61	0	1	0	0	0	0	0	0	0	14132	522	18	3		3	SELP	1	169572650	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13256	169572650	79677971	559	68804											
SELE	6401	broad.mit.edu	37	chr1	169694835	169694835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcatgtagagaagatacCtctctcataaccatttgtga	8	8	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169694835	A	A	169694835	1	1	61	0	1	0	0	0	0	0	0	0	14126	696	24	2		2	SELE	1	169694835	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	122185	169694835	79555786	560	68805											
PRRX1	5396	broad.mit.edu	37	chr1	170656029	170656029	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaactataataacattggttGagtgccttataaatggttat	8	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170656029	T	T	170656029	1	4	61	0	1	0	0	0	0	0	0	0	12718	1305	45	3		3	PRRX1	1	170656029	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	961194	170656029	78594592	561	68806											
C1orf129	80133	broad.mit.edu	37	chr1	170981919	170981919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaagcgctgggattaCaggcatgagccaccgcaccc	10	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170981919	A	A	170981919	1	1	61	0	1	0	0	0	0	0	0	0	2016	493	17	3		3	C1orf129	1	170981919	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	325890	170981919	78268702	562	68807											
BAT2L2	23215	broad.mit.edu	37	chr1	171501704	171501704	+	Frame_Shift_Del	DEL	A	-	-													aactgaaacgattggatgagAagcttggcatcctggaaaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171501704	-	-	171501704	7	5	61	1	0	1	0	1	0	0	0	0	1326	247	9	0	1513	0	BAT2L2	1	171501704	Frame_Shift_Del	DEL	A	TCGA-17-Z031-01A-01W-0746-08	519785	171501704	77748917	563	68808											
VAMP4	8674	broad.mit.edu	37	chr1	171675514	171675514	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataaatacttactgataatCactagcaaaaggatagcagc	6	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171675514	A	A	171675514	2	1	61	1	0	0	0	0	0	0	0	1	17242	813	29	3		3	VAMP4	1	171675514	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	173810	171675514	77575107	564	68809											
C1orf9	51430	broad.mit.edu	37	chr1	172501625	172501625	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaatcagatgagaggattcTtggcacgcccctttctatct	8	12	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172501625	G	G	172501625	1	3	61	0	1	0	0	0	0	0	0	0	2089	1624	56	5		5	C1orf9	1	172501625	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	826111	172501625	76748996	565	68810											
FASLG	356	broad.mit.edu	37	chr1	172629278	172629278	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatctttggagaagcaaaTaggtgagtcttttttcgcat	9	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172629278	C	C	172629278	3	2	61	1	0	0	0	0	1	0	0	0	5739	1406	49	5	398	5	FASLG	1	172629278	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	127653	172629278	76621343	566	68811											
TNFSF4	7292	broad.mit.edu	37	chr1	173155714	173155714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagttctccgccattcaCatggaagtcatccagggagg	10	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173155714	A	A	173155714	3	1	61	1	0	0	0	0	1	0	0	0	16433	478	17	3	62	3	TNFSF4	1	173155714	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	526436	173155714	76094907	567	68812											
ANKRD45	339416	broad.mit.edu	37	chr1	173628467	173628467	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcttagggcctgtttcctCtggttcttgggcttcttctt	10	10	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173628467	T	T	173628467	3	4	61	1	0	0	0	0	1	0	0	0	673	922	32	4	729	4	ANKRD45	1	173628467	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	472753	173628467	75622154	568	68813											
GPR52	9293	broad.mit.edu	37	chr1	174417408	174417408	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgtgttgctgacatttctGatcattgctgggaatctaac	9	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174417408	C	C	174417408	2	2	61	1	0	0	0	0	0	0	0	1	6763	1277	45	4		4	GPR52	1	174417408	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	788941	174417408	74833213	569	68814											
RABGAP1L	9910	broad.mit.edu	37	chr1	174790161	174790161	+	Intron	DEL	A	-	-													tgagactccatctcaaaaagAaaaaaaaaaaaaaactgccc					rs72021518		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	174790161	-	-	174790161	6	5	61	0	1	1	0	1	0	0	0	0	13073	261	9	0		0	RABGAP1L	1	174790161	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	372753	174790161	74460460	570	68815											
TNN	63923	broad.mit.edu	37	chr1	175048527	175048527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagacctgcagctgccaCtgcgaagagggcagggaggg	18	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175048527	A	A	175048527	3	1	61	1	0	0	0	0	1	0	0	0	16446	564	20	3	474	3	TNN	1	175048527	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	258366	175048527	74202094	571	68816											
TNN	63923	broad.mit.edu	37	chr1	175048830	175048830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagggcttcacaggcctGgactgtgcccagggtgagag	18	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175048830	T	T	175048830	2	4	61	1	0	0	0	0	0	0	0	1	16446	1335	47	2		2	TNN	1	175048830	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	303	175048830	74201791	572	68817											
TNN	63923	broad.mit.edu	37	chr1	175049252	175049252	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatactcactgggtctggatCgcctcccttgctcaccctct	7	16	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175049252	A	A	175049252	1	1	61	0	1	0	0	0	0	0	0	0	16446	899	31	3		3	TNN	1	175049252	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	422	175049252	74201369	573	68818											
TNN	63923	broad.mit.edu	37	chr1	175068760	175068760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtcaggaggaggagaGgtgaggggtcaggaggagga	25	2	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175068760	T	T	175068760	1	4	61	0	1	0	0	0	0	0	0	0	16446	1015	35	2		2	TNN	1	175068760	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19508	175068760	74181861	574	68819											
TNN	63923	broad.mit.edu	37	chr1	175087625	175087625	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaaagggtttcaccccacGcaaaatgaccaccagtttct	7	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175087625	A	A	175087625	1	1	61	0	1	0	0	0	0	0	0	0	16446	1102	38	4		4	TNN	1	175087625	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18865	175087625	74162996	575	68820											
TNN	63923	broad.mit.edu	37	chr1	175097746	175097746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagttggtgcccgtttccCacacccttcggactgcagtc	9	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175097746	A	A	175097746	3	1	61	1	0	0	0	0	1	0	0	0	16446	594	21	2	3248	2	TNN	1	175097746	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10121	175097746	74152875	576	68821											
TNR	7143	broad.mit.edu	37	chr1	175292346	175292346	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaccaagagcagatgttaGccagcggattcctgcgacat	11	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175292346	T	T	175292346	1	4	61	0	1	0	0	0	0	0	0	0	16461	986	34	3		3	TNR	1	175292346	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	194600	175292346	73958275	577	68822											
TNR	7143	broad.mit.edu	37	chr1	175323662	175323662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatccacaatcagctcctGtataatgagccaaaggaagg	9	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175323662	T	T	175323662	1	4	61	0	1	0	0	0	0	0	0	0	16461	1392	48	3		3	TNR	1	175323662	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31316	175323662	73926959	578	68823											
TNR	7143	broad.mit.edu	37	chr1	175331784	175331784	+	Intron	DEL	G	-	-													ggttctgacttgacacagcaGggagacattcccacctgtgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	175331784	-	-	175331784	6	5	61	0	1	1	0	1	0	0	0	0	16461	1015	35	0		0	TNR	1	175331784	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	8122	175331784	73918837	579	68824											
TNR	7143	broad.mit.edu	37	chr1	175332651	175332651	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctctgggtgaatgtaatCaagcctttctcaagaggcat	10	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175332651	G	G	175332651	1	3	61	0	1	0	0	0	0	0	0	0	16461	841	29	4		4	TNR	1	175332651	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	867	175332651	73917970	580	68825											
TNR	7143	broad.mit.edu	37	chr1	175360254	175360254	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatgagtaatagggaagaTgatgagctaagcatctggta	14	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175360254	C	C	175360254	1	2	61	0	1	0	0	0	0	0	0	0	16461	1479	51	5		5	TNR	1	175360254	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27603	175360254	73890367	581	68826											
TNR	7143	broad.mit.edu	37	chr1	175372735	175372735	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgtggccactgcagtgagGgatatagtccagttgtcctg	14	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372735	A	A	175372735	3	1	61	1	0	0	0	0	1	0	0	0	16461	1232	43	4	3639	4	TNR	1	175372735	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12481	175372735	73877886	582	68827											
TNR	7143	broad.mit.edu	37	chr1	175401857	175401857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtattaggagcctaggggcCtctgctctgctcctcttatg	11	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175401857	A	A	175401857	1	1	61	0	1	0	0	0	0	0	0	0	16461	696	24	2		2	TNR	1	175401857	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	29122	175401857	73848764	583	68828											
TNR	7143	broad.mit.edu	37	chr1	175454605	175454605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaagggtttggggtggGgtgggcacagtcagagatag	21	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175454605	T	T	175454605	1	4	61	0	1	0	0	0	0	0	0	0	16461	1247	43	2		2	TNR	1	175454605	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	52748	175454605	73796016	584	68829											
TNR	7143	broad.mit.edu	37	chr1	175647539	175647539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttttttaaaatacacagCcacttttgaaaaccaccact	2	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175647539	A	A	175647539	1	1	61	0	1	0	0	0	0	0	0	0	16461	754	26	3		3	TNR	1	175647539	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	192934	175647539	73603082	585	68830											
TNR	7143	broad.mit.edu	37	chr1	175650536	175650536	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggtgcaggaagtcaaagaGaaccaagggaagagctggct	16	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175650536	C	C	175650536	1	2	61	0	1	0	0	0	0	0	0	0	16461	957	33	4		4	TNR	1	175650536	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2997	175650536	73600085	586	68831											
TNR	7143	broad.mit.edu	37	chr1	175668639	175668639	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgccagccagtgcaatggGagagtgaatgcactgataca	12	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175668639	T	T	175668639	1	4	61	0	1	0	0	0	0	0	0	0	16461	1189	41	3		3	TNR	1	175668639	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18103	175668639	73581982	587	68832											
TNR	7143	broad.mit.edu	37	chr1	175684152	175684152	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctcttgactcagtcaactGcctctaaaaccatgcttctc	6	14	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175684152	C	C	175684152	1	2	61	0	1	0	0	0	0	0	0	0	16461	1334	46	4		4	TNR	1	175684152	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15513	175684152	73566469	588	68833											
TNR	7143	broad.mit.edu	37	chr1	175685653	175685653	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctcttgcccaaccctctcTttctgttcccattttcacct	3	17	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175685653	A	A	175685653	1	1	61	0	1	0	0	0	0	0	0	0	16461	1624	56	5		5	TNR	1	175685653	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1501	175685653	73564968	589	68834											
PAPPA2	60676	broad.mit.edu	37	chr1	176526166	176526166	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtcaaaaagagtccaccGgaggaaagcaaccaaaatgg	12	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176526166	A	A	176526166	2	1	61	1	0	0	0	0	0	0	0	1	11527	1103	39	4		4	PAPPA2	1	176526166	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	840513	176526166	72724455	590	68835											
PAPPA2	60676	broad.mit.edu	37	chr1	176585189	176585189	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacattttatatactgacaGcaagaatcttttgccaaatg	6	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176585189	A	A	176585189	1	1	61	0	1	0	0	0	0	0	0	0	11527	986	34	4		4	PAPPA2	1	176585189	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59023	176585189	72665432	591	68836											
PAPPA2	60676	broad.mit.edu	37	chr1	176760739	176760739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctctgtcgcccaggctgGggtgcagtggcacagtctca	14	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176760739	T	T	176760739	1	4	61	0	1	0	0	0	0	0	0	0	11527	1247	43	2		2	PAPPA2	1	176760739	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	175550	176760739	72489882	592	68837											
PAPPA2	60676	broad.mit.edu	37	chr1	176769155	176769155	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcacacacaacaaatGtctttaattttgttttctgt	3	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176769155	A	A	176769155	1	1	61	0	1	0	0	0	0	0	0	0	11527	1392	48	4		4	PAPPA2	1	176769155	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8416	176769155	72481466	593	68838											
PAPPA2	60676	broad.mit.edu	37	chr1	176769183	176769183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgttttctgtttttcccGtctttccccttagagcattg	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176769183	T	T	176769183	1	4	61	0	1	0	0	0	0	0	0	0	11527	1160	40	3		3	PAPPA2	1	176769183	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	28	176769183	72481438	594	68839											
PAPPA2	60676	broad.mit.edu	37	chr1	176769233	176769233	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccggcgtcaatggcacccaGaccccgtcttagtccactgc	10	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176769233	T	T	176769233	3	4	61	1	0	0	0	0	1	0	0	0	11527	942	33	3	5298	3	PAPPA2	1	176769233	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	50	176769233	72481388	595	68840											
PAPPA2	60676	broad.mit.edu	37	chr1	176788721	176788721	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcaaatgagataatgttTgtgagggcatttgtagacac	10	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176788721	A	A	176788721	1	1	61	0	1	0	0	0	0	0	0	0	11527	1827	63	5		5	PAPPA2	1	176788721	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19488	176788721	72461900	596	68841											
ASTN1	460	broad.mit.edu	37	chr1	176833058	176833058	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggaactgagtgagcacaGggtgcctacttaatagactt	11	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176833058	T	T	176833058	1	4	61	0	1	0	0	0	0	0	0	0	1068	1015	35	2		2	ASTN1	1	176833058	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44337	176833058	72417563	597	68842											
ASTN1	460	broad.mit.edu	37	chr1	176847250	176847250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggggcctcacacaggcaGcccccataccacctgaacac	9	18	1	1	rs151190335	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176847250	T	T	176847250	1	4	61	0	1	0	0	0	0	0	0	0	1068	986	34	3		3	ASTN1	1	176847250	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14192	176847250	72403371	598	68843											
ASTN1	460	broad.mit.edu	37	chr1	176853573	176853573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtggctctgagtgttccCactccaggaccacaagagtg	12	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176853573	A	A	176853573	3	1	61	1	0	0	0	0	1	0	0	0	1068	595	21	2	780	2	ASTN1	1	176853573	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6323	176853573	72397048	599	68844											
ASTN1	460	broad.mit.edu	37	chr1	176857284	176857284	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacatcgacaccagtcctcGatgacatctccagtccctga	6	16	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176857284	T	T	176857284	2	4	61	1	0	0	0	0	0	0	0	1	1068	1048	37	3		3	ASTN1	1	176857284	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3711	176857284	72393337	600	68845											
ASTN1	460	broad.mit.edu	37	chr1	176863991	176863991	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacacaaaatggaaagaaaCagtgaaggagtcaaaaaagt	10	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176863991	G	G	176863991	1	3	61	0	1	0	0	0	0	0	0	0	1068	493	17	4		4	ASTN1	1	176863991	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6707	176863991	72386630	601	68846											
ASTN1	460	broad.mit.edu	37	chr1	176883691	176883691	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcataccgcatggggtccTgaagaaccagtccaggaatt	12	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176883691	C	C	176883691	1	2	61	0	1	0	0	0	0	0	0	0	1068	1595	55	5		5	ASTN1	1	176883691	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19700	176883691	72366930	602	68847											
ASTN1	460	broad.mit.edu	37	chr1	176900223	176900223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtgggcaaagaacgatGggagaagatatgaataaggt	15	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176900223	T	T	176900223	1	4	61	0	1	0	0	0	0	0	0	0	1068	1363	47	2		2	ASTN1	1	176900223	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16532	176900223	72350398	603	68848											
ASTN1	460	broad.mit.edu	37	chr1	176904352	176904353	+	Intron	DNP	GA	TT	TT													agtaaagtctagctcagcttGagacctcaggtgctgagatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	176904353	TT	TT	176904352	1	4	61	0	1	0	0	0	0	0	0	0	1068	1305	45	3		3	ASTN1	1	176904352	Intron	DNP	GA	TCGA-17-Z031-01A-01W-0746-08	4129	176904352	72346269	604	68849											
ASTN1	460	broad.mit.edu	37	chr1	176927331	176927331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagataaaaagcagaccCtggcacaacatagggggaat	10	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176927331	A	A	176927331	1	1	61	0	1	0	0	0	0	0	0	0	1068	696	24	2		2	ASTN1	1	176927331	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22979	176927331	72323290	605	68850											
ASTN1	460	broad.mit.edu	37	chr1	176977999	176977999	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggaaacgagggcacccagAgataaagaaacagccatagt	11	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176977999	T	T	176977999	1	4	61	0	1	0	0	0	0	0	0	0	1068	319	11	5		5	ASTN1	1	176977999	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	50668	176977999	72272622	606	68851											
ASTN1	460	broad.mit.edu	37	chr1	176983956	176983957	+	Nonsense_Mutation	DNP	GC	TT	TT													gtcccccattcgttccgaatGcaaaggtgcttatgtactgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	176983957	TT	TT	176983956	4	4	61	1	0	0	0	0	0	1	0	0	1068	1311	46	3	2458	3	ASTN1	1	176983956	Nonsense_Mutation	DNP	GC	TCGA-17-Z031-01A-01W-0746-08	5957	176983956	72266665	607	68852											
ASTN1	460	broad.mit.edu	37	chr1	176992529	176992529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttacccgctgcccggtgCtcccgcctaccagtttcggg	11	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176992529	A	A	176992529	1	1	61	0	1	0	0	0	0	0	0	0	1068	812	28	3		3	ASTN1	1	176992529	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8573	176992529	72258092	608	68853											
ASTN1	460	broad.mit.edu	37	chr1	177133590	177133590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccacgaccatttctcccgGgaagtcgttgcgcaccgaga	10	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177133590	T	T	177133590	3	4	61	1	0	0	0	0	1	0	0	0	1068	1232	43	2	3757	2	ASTN1	1	177133590	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	141061	177133590	72117031	609	68854											
FAM5B	57795	broad.mit.edu	37	chr1	177226607	177226607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaccatctctaggtcaGctgggccgactgatggaaga	11	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177226607	T	T	177226607	1	4	61	0	1	0	0	0	0	0	0	0	5644	986	34	3		3	FAM5B	1	177226607	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	93017	177226607	72024014	610	68855											
FAM5B	57795	broad.mit.edu	37	chr1	177245670	177245671	+	Intron	DNP	GG	TT	TT													agagttgaggatcctcatggGgatcctgacatgaccactta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	177245671	TT	TT	177245670	1	4	61	0	1	0	0	0	0	0	0	0	5644	1247	43	2		2	FAM5B	1	177245670	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	19063	177245670	72004951	611	68856											
FAM5B	57795	broad.mit.edu	37	chr1	177250527	177250527	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacctggcaaagtccgacttGaccttttctcctgcttgctc	7	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177250527	C	C	177250527	3	2	61	1	0	0	0	0	1	0	0	0	5644	1290	45	4	2241	4	FAM5B	1	177250527	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4857	177250527	72000094	612	68857											
FAM5B	57795	broad.mit.edu	37	chr1	177251282	177251282	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctccttgctcccctcccTtactcctccctctgctgcct	5	22	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177251282	G	G	177251282	1	3	61	0	1	0	0	0	0	0	0	0	5644	1624	56	5		5	FAM5B	1	177251282	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	755	177251282	71999339	613	68858											
SEC16B	89866	broad.mit.edu	37	chr1	177902560	177902560	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttccaagtctgcaccaccCtcgaggaagggaatggcagg	12	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177902560	T	T	177902560	1	4	61	0	1	0	0	0	0	0	0	0	14100	696	24	4		4	SEC16B	1	177902560	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	651278	177902560	71348061	614	68859											
RASAL2	9462	broad.mit.edu	37	chr1	178412287	178412287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgttctgtccttgagCcagtaattagtgtgagaaat	11	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178412287	A	A	178412287	3	1	61	1	0	0	0	0	1	0	0	0	13172	739	26	3	1452	3	RASAL2	1	178412287	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	509727	178412287	70838334	615	68860											
FAM20B	9917	broad.mit.edu	37	chr1	179019583	179019583	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactcgtggactccttcagaAggatgcaacactaataaata	8	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179019583	G	G	179019583	1	3	61	0	1	0	0	0	0	0	0	0	5585	87	3	5		5	FAM20B	1	179019583	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	607296	179019583	70231038	616	68861											
ABL2	27	broad.mit.edu	37	chr1	179081426	179081426	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaattagtcaccaacagtaAatccaacagattctcacctt	4	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179081426	G	G	179081426	1	3	61	0	1	0	0	0	0	0	0	0	93	29	1	5		5	ABL2	1	179081426	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	61843	179081426	70169195	617	68862											
C1orf125	126859	broad.mit.edu	37	chr1	179503848	179503848	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctttctattttgttgtgtCttctcttccatatcagggag	7	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179503848	G	G	179503848	1	3	61	0	1	0	0	0	0	0	0	0	2013	928	32	4		4	C1orf125	1	179503848	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	422422	179503848	69746773	618	68863											
NPHS2	7827	broad.mit.edu	37	chr1	179526132	179526132	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaaagataaatatttcaGcatattggccattatgttta	5	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179526132	A	A	179526132	1	1	61	0	1	0	0	0	0	0	0	0	10678	986	34	4		4	NPHS2	1	179526132	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22284	179526132	69724489	619	68864											
TDRD5	163589	broad.mit.edu	37	chr1	179562685	179562685	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaactcaatgcataagggaaGacctagtatttattctggac	8	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179562685	T	T	179562685	3	4	61	1	0	0	0	0	1	0	0	0	15855	942	33	3	329	3	TDRD5	1	179562685	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36553	179562685	69687936	620	68865											
CEP350	9857	broad.mit.edu	37	chr1	180006108	180006108	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccatcatcgtatggcagcaGaactcagttatctgaacgcc	8	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180006108	T	T	180006108	4	4	61	1	0	0	0	0	0	1	0	0	3284	943	33	3	4056	3	CEP350	1	180006108	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	443423	180006108	69244513	621	68866											
QSOX1	5768	broad.mit.edu	37	chr1	180163465	180163465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatgcaccgggtggggaGtcccaacgccgctgtcctct	12	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180163465	T	T	180163465	3	4	61	1	0	0	0	0	1	0	0	0	12991	1029	36	3	1448	3	QSOX1	1	180163465	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	157357	180163465	69087156	622	68867											
LHX4	89884	broad.mit.edu	37	chr1	180217658	180217658	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccaagcagtgagggggaAgtttgcagcagggtaggcca	16	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180217658	C	C	180217658	1	2	61	0	1	0	0	0	0	0	0	0	8845	87	3	5		5	LHX4	1	180217658	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	54193	180217658	69032963	623	68868											
XPR1	9213	broad.mit.edu	37	chr1	180824636	180824636	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtgaaacctcgtctctActaaaaatacaaaaattagc	5	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180824636	G	G	180824636	1	3	61	0	1	0	0	0	0	0	0	0	17578	406	14	5		5	XPR1	1	180824636	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	606978	180824636	68425985	624	68869											
KIAA1614	57710	broad.mit.edu	37	chr1	180885637	180885637	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgggactccatcagaggggtCtttcctgccaggtgctgtgg	15	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180885637	A	A	180885637	3	1	61	1	0	0	0	0	1	0	0	0	8318	913	32	3	404	3	KIAA1614	1	180885637	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61001	180885637	68364984	625	68870											
KIAA1614	57710	broad.mit.edu	37	chr1	180904852	180904852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacacacatcggagacaccGtgtgccctgcggaggtggac	13	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180904852	T	T	180904852	3	4	61	1	0	0	0	0	1	0	0	0	8318	1145	40	3	1825	3	KIAA1614	1	180904852	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19215	180904852	68345769	626	68871											
STX6	10228	broad.mit.edu	37	chr1	180962477	180962477	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctttctgtcattgataaTtatattctgatgttttctca	5	6	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180962477	C	C	180962477	1	2	61	0	1	0	0	0	0	0	0	0	15467	1508	52	5		5	STX6	1	180962477	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	57625	180962477	68288144	627	68872											
CACNA1E	777	broad.mit.edu	37	chr1	181548540	181548540	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagactagatatcctcacTtgacattaatattgcaaagc	5	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181548540	A	A	181548540	1	1	61	0	1	0	0	0	0	0	0	0	2568	1624	56	5		5	CACNA1E	1	181548540	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	586063	181548540	67702081	628	68873											
CACNA1E	777	broad.mit.edu	37	chr1	181548570	181548570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgcaaagcaaatatgtaGttggaagatttcaaatagat	8	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181548570	T	T	181548570	1	4	61	0	1	0	0	0	0	0	0	0	2568	1044	36	3		3	CACNA1E	1	181548570	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30	181548570	67702051	629	68874											
CACNA1E	777	broad.mit.edu	37	chr1	181570137	181570137	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctgagaacttgatcatcTtctcttggggctatttcttc	8	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181570137	A	A	181570137	1	1	61	0	1	0	0	0	0	0	0	0	2568	1624	56	5		5	CACNA1E	1	181570137	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	21567	181570137	67680484	630	68875											
CACNA1E	777	broad.mit.edu	37	chr1	181649627	181649627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgccaacccacagggcCgggaaagtcaagaactgtgt	13	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181649627	A	A	181649627	1	1	61	0	1	0	0	0	0	0	0	0	2568	667	23	1		1	CACNA1E	1	181649627	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79490	181649627	67600994	631	68876											
CACNA1E	777	broad.mit.edu	37	chr1	181684348	181684348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttctgatgctggtgccTgtgacaggctctgaactctg	11	10	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181684348	A	A	181684348	1	1	61	0	1	0	0	0	0	0	0	0	2568	1595	55	5		5	CACNA1E	1	181684348	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	34721	181684348	67566273	632	68877											
CACNA1E	777	broad.mit.edu	37	chr1	181685136	181685136	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccagaatggtctgggtgtActtgtggcctctcactggtc	13	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181685136	T	T	181685136	1	4	61	0	1	0	0	0	0	0	0	0	2568	406	14	5		5	CACNA1E	1	181685136	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	788	181685136	67565485	633	68878											
CACNA1E	777	broad.mit.edu	37	chr1	181701863	181701863	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtccctgggccagcgggagCcaccatggctggccaggccc	15	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181701863	G	G	181701863	3	3	61	1	0	0	0	0	1	0	0	0	2568	739	26	4	2719	4	CACNA1E	1	181701863	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16727	181701863	67548758	634	68879											
CACNA1E	777	broad.mit.edu	37	chr1	181702956	181702956	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggctggggccatgacaatAaagccacatggaaagcacca	13	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181702956	G	G	181702956	1	3	61	0	1	0	0	0	0	0	0	0	2568	377	13	5		5	CACNA1E	1	181702956	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1093	181702956	67547665	635	68880											
CACNA1E	777	broad.mit.edu	37	chr1	181727059	181727059	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaggggatttgaatttgtgCtaataaccatgactttcttg	9	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181727059	G	G	181727059	1	3	61	0	1	0	0	0	0	0	0	0	2568	812	28	4		4	CACNA1E	1	181727059	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24103	181727059	67523562	636	68881											
CACNA1E	777	broad.mit.edu	37	chr1	181732422	181732422	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagctggaattggggttaAcaaagacagagactgtgtcc	12	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181732422	C	C	181732422	1	2	61	0	1	0	0	0	0	0	0	0	2568	58	2	5		5	CACNA1E	1	181732422	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5363	181732422	67518199	637	68882											
CACNA1E	777	broad.mit.edu	37	chr1	181755039	181755039	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccccaaaactcactgctcAgaagggcccaagaacaaata	7	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181755039	G	G	181755039	1	3	61	0	1	0	0	0	0	0	0	0	2568	203	7	5		5	CACNA1E	1	181755039	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	22617	181755039	67495582	638	68883											
CACNA1E	777	broad.mit.edu	37	chr1	181767893	181767893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatcggcggcggaggcgcGgggggcctgggccaggcatg	21	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181767893	T	T	181767893	3	4	61	1	0	0	0	0	1	0	0	0	2568	1116	39	1	6922	1	CACNA1E	1	181767893	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12854	181767893	67482728	639	68884											
ZNF648	127665	broad.mit.edu	37	chr1	182025428	182025428	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccaagtagtgaggtcgaCgatgctatcttcactcgtca	10	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182025428	A	A	182025428	1	1	61	0	1	0	0	0	0	0	0	0	18190	551	19	3		3	ZNF648	1	182025428	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	257535	182025428	67225193	640	68885											
RGS8	85397	broad.mit.edu	37	chr1	182615997	182615997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttggtcaaagcaagtcaggGatggctcctgcaggttcttc	12	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182615997	T	T	182615997	3	4	61	1	0	0	0	0	1	0	0	0	13421	1174	41	3	130	3	RGS8	1	182615997	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	590569	182615997	66634624	641	68886											
DHX9	1660	broad.mit.edu	37	chr1	182847117	182847117	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atataatagttattgataatAcacatgagtcttagaattaa	5	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182847117	G	G	182847117	1	3	61	0	1	0	0	0	0	0	0	0	4556	406	14	5		5	DHX9	1	182847117	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	231120	182847117	66403504	642	68887											
NMNAT2	23057	broad.mit.edu	37	chr1	183230190	183230190	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttgatgtcatccttcacCaccatgatgttgttctgagg	10	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183230190	A	A	183230190	2	1	61	1	0	0	0	0	0	0	0	1	10594	581	21	2		2	NMNAT2	1	183230190	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	383073	183230190	66020431	643	68888											
GLT25D2	23127	broad.mit.edu	37	chr1	183909826	183909826	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagagatgacgtagcccAgggtccagtaggaatagtcg	14	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183909826	G	G	183909826	3	3	61	1	0	0	0	0	1	0	0	0	6531	188	7	5	395	5	GLT25D2	1	183909826	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	679636	183909826	65340795	644	68889											
C1orf26	54823	broad.mit.edu	37	chr1	185171771	185171771	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttttcctcctaatcccaAcctcccaaccttagggatga	4	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185171771	C	C	185171771	1	2	61	0	1	0	0	0	0	0	0	0	2057	58	2	5		5	C1orf26	1	185171771	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1261945	185171771	64078850	645	68890											
HMCN1	83872	broad.mit.edu	37	chr1	185833509	185833509	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaataaaaaggaaaacttgCtcgttctaaaactcccaaag	5	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185833509	T	T	185833509	1	4	61	0	1	0	0	0	0	0	0	0	7287	812	28	4		4	HMCN1	1	185833509	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	661738	185833509	63417112	646	68891											
HMCN1	83872	broad.mit.edu	37	chr1	185931768	185931768	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgcctggaccgttaacgaTatgtttatcgtgggttcaca	10	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185931768	C	C	185931768	2	2	61	1	0	0	0	0	0	0	0	1	7287	1403	49	5		5	HMCN1	1	185931768	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	98259	185931768	63318853	647	68892											
HMCN1	83872	broad.mit.edu	37	chr1	185933167	185933167	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatttcacacactgattgaAgcaaatattgtaaccaattt	4	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185933167	T	T	185933167	1	4	61	0	1	0	0	0	0	0	0	0	7287	87	3	5		5	HMCN1	1	185933167	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1399	185933167	63317454	648	68893											
HMCN1	83872	broad.mit.edu	37	chr1	186050512	186050512	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcataaatttctatctaatGgacgaattctgcaggtaaaa	6	6	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186050512	T	T	186050512	4	4	61	1	0	0	0	0	0	1	0	0	7287	1349	47	2	8995	2	HMCN1	1	186050512	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	117345	186050512	63200109	649	68894											
HMCN1	83872	broad.mit.edu	37	chr1	186105679	186105679	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctataatcttagttgggaaGcaacagtgttttataaacaa	7	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186105679	A	A	186105679	1	1	61	0	1	0	0	0	0	0	0	0	7287	986	34	4		4	HMCN1	1	186105679	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	55167	186105679	63144942	650	68895											
OCLM	10896	broad.mit.edu	37	chr1	186370202	186370202	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtatccaccattattgTtaaagatttaccttagcaga	7	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186370202	G	G	186370202	3	3	61	1	0	0	0	0	1	0	0	0	10914	1722	60	5	27	5	OCLM	1	186370202	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	264523	186370202	62880419	651	68896											
OCLM	10896	broad.mit.edu	37	chr1	186370383	186370383	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactgtttgtatgttaaacTtgatacatttagaagttaat	7	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186370383	G	G	186370383	1	3	61	0	1	0	0	0	0	0	0	0	10914	1624	56	5		5	OCLM	1	186370383	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	181	186370383	62880238	652	68897											
PLA2G4A	5321	broad.mit.edu	37	chr1	186876175	186876175	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatgagaaatattgtgagtGatccactaatttattttaat	8	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186876175	T	T	186876175	1	4	61	0	1	0	0	0	0	0	0	0	12096	1305	45	3		3	PLA2G4A	1	186876175	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	505792	186876175	62374446	653	68898											
PLA2G4A	5321	broad.mit.edu	37	chr1	186916013	186916013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttaggtgtctggggcaGtgccttttccatattgttca	10	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186916013	T	T	186916013	3	4	61	1	0	0	0	0	1	0	0	0	12096	1029	36	3	1226	3	PLA2G4A	1	186916013	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39838	186916013	62334608	654	68899											
PLA2G4A	5321	broad.mit.edu	37	chr1	186925348	186925348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttattcaataccagagaagGacgtgctgggaaggtacaca	11	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186925348	T	T	186925348	3	4	61	1	0	0	0	0	1	0	0	0	12096	1174	41	3	1501	3	PLA2G4A	1	186925348	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9335	186925348	62325273	655	68900											
PLA2G4A	5321	broad.mit.edu	37	chr1	186934782	186934782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattctcttgcttgccttatAgatctcttagtccctttgac	5	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186934782	G	G	186934782	1	3	61	0	1	0	0	0	0	0	0	0	12096	435	15	5		5	PLA2G4A	1	186934782	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9434	186934782	62315839	656	68901											
PLA2G4A	5321	broad.mit.edu	37	chr1	186948396	186948396	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattccttgggttttagagAtattttgtagttttcaaaat	7	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186948396	C	C	186948396	1	2	61	0	1	0	0	0	0	0	0	0	12096	348	12	5		5	PLA2G4A	1	186948396	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	13614	186948396	62302225	657	68902											
PLA2G4A	5321	broad.mit.edu	37	chr1	186948409	186948409	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagagatattttgtagttTtcaaaataacaccctttgtg	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186948409	C	C	186948409	1	2	61	0	1	0	0	0	0	0	0	0	12096	1856	64	5		5	PLA2G4A	1	186948409	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13	186948409	62302212	658	68903											
FAM5C	339479	broad.mit.edu	37	chr1	190250606	190250606	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactattcatactgtagctaTcttgattaattaacactttt	3	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190250606	C	C	190250606	1	2	61	0	1	0	0	0	0	0	0	0	5645	1450	50	5		5	FAM5C	1	190250606	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3302197	190250606	59000015	659	68904											
CDC73	79577	broad.mit.edu	37	chr1	193091533	193091533	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaggcgacctctttcttaAcccctccccccgtttcccct	4	22	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193091533	T	T	193091533	1	4	61	0	1	0	0	0	0	0	0	0	3115	58	2	5		5	CDC73	1	193091533	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2840927	193091533	56159088	660	68905											
B3GALT2	8707	broad.mit.edu	37	chr1	193150639	193150640	+	Missense_Mutation	DNP	GG	TT	TT													gtgcggaacagagaccttttGgcattccaggtcatctttgc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	193150640	TT	TT	193150639	3	4	61	1	0	0	0	0	1	0	0	0	1253	1335	47	2	1218	2	B3GALT2	1	193150639	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	59106	193150639	56099982	661	68906											
CDC73	79577	broad.mit.edu	37	chr1	193190084	193190085	+	Intron	DEL	AT	-	-													agctttccaccttttagtcaAtatatatatggcttttcatg					rs147182466		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	193190085	-	-	193190084	6	5	61	0	1	1	0	1	0	0	0	0	3115	116	4	0		0	CDC73	1	193190084	Intron	DEL	AT	TCGA-17-Z031-01A-01W-0746-08	39445	193190084	56060537	662	68907											
KCNT2	343450	broad.mit.edu	37	chr1	196269660	196269660	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagggctccccctctactCagaggagggcaatgtcctca	11	14	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196269660	A	A	196269660	1	1	61	0	1	0	0	0	0	0	0	0	8162	841	29	3		3	KCNT2	1	196269660	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3079576	196269660	52980961	663	68908											
KCNT2	343450	broad.mit.edu	37	chr1	196577340	196577340	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaatcctccaccacaccaCtcacctgtcgtcgttttgcc	4	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196577340	G	G	196577340	1	3	61	0	1	0	0	0	0	0	0	0	8162	580	20	4		4	KCNT2	1	196577340	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	307680	196577340	52673281	664	68909											
KCNT2	343450	broad.mit.edu	37	chr1	196577362	196577362	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtcgtcgttttgccaTccttggtcccctagcagcaa	8	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196577362	G	G	196577362	2	3	61	1	0	0	0	0	0	0	0	1	8162	1422	50	5		5	KCNT2	1	196577362	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	22	196577362	52673259	665	68910											
CFHR3	10878	broad.mit.edu	37	chr1	196749059	196749059	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgcagaccacagttacatGtacggagaaaggctggtctc	12	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196749059	A	A	196749059	3	1	61	1	0	0	0	0	1	0	0	0	3316	1377	48	4	396	4	CFHR3	1	196749059	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	171697	196749059	52501562	666	68911											
CFHR1	3078	broad.mit.edu	37	chr1	196797377	196797377	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaccacctcaatgcaaagGtagagtattatatttctttt	6	7	2	2	rs112994000		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196797377	T	T	196797377	5	4	61	1	0	0	0	0	0	0	1	0	3314	1275	44	3	622	3	CFHR1	1	196797377	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	48318	196797377	52453244	667	68912											
CFHR4	10877	broad.mit.edu	37	chr1	196874425	196874425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccaatttgcattagtaaGttatttacatattcccactc	3	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196874425	T	T	196874425	1	4	61	0	1	0	0	0	0	0	0	0	3317	1044	36	3		3	CFHR4	1	196874425	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	77048	196874425	52376196	668	68913											
F13B	2165	broad.mit.edu	37	chr1	197029475	197029475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacatggcattttgcgaGtattaaatttaaaaatttac	6	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197029475	T	T	197029475	1	4	61	0	1	0	0	0	0	0	0	0	5384	1044	36	3		3	F13B	1	197029475	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	155050	197029475	52221146	669	68914											
CRB1	23418	broad.mit.edu	37	chr1	197297505	197297505	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagaaagatttttaacttTgtcctcatttataaatttaa	3	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197297505	C	C	197297505	1	2	61	0	1	0	0	0	0	0	0	0	3880	1827	63	5		5	CRB1	1	197297505	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	268030	197297505	51953116	670	68915											
DENND1B	163486	broad.mit.edu	37	chr1	197479707	197479707	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaatatcttctgaagtctcTttggcttctttcccttcttt	4	12	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197479707	C	C	197479707	2	2	61	1	0	0	0	0	0	0	0	1	4467	1606	56	5		5	DENND1B	1	197479707	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	182202	197479707	51770914	671	68916											
DENND1B	163486	broad.mit.edu	37	chr1	197515799	197515799	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataagtataaacagcatacTtttgctgaacatttctccat	4	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197515799	C	C	197515799	1	2	61	0	1	0	0	0	0	0	0	0	4467	1624	56	5		5	DENND1B	1	197515799	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36092	197515799	51734822	672	68917											
DENND1B	163486	broad.mit.edu	37	chr1	197611788	197611788	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgcaaaggtttttaggtCtttttgtgaaacactcaata	7	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197611788	G	G	197611788	1	3	61	0	1	0	0	0	0	0	0	0	4467	928	32	4		4	DENND1B	1	197611788	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	95989	197611788	51638833	673	68918											
PTPRC	5788	broad.mit.edu	37	chr1	198608396	198608396	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggacacggctgacttccaGatatgaccatgtatttgtgg	12	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198608396	C	C	198608396	1	2	61	0	1	0	0	0	0	0	0	0	12905	957	33	4		4	PTPRC	1	198608396	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	996608	198608396	50642225	674	68919											
PTPRC	5788	broad.mit.edu	37	chr1	198665779	198665779	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagtatactgggaggagcaTacatttagggtatgattcac	11	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198665779	C	C	198665779	1	2	61	0	1	0	0	0	0	0	0	0	12905	1421	49	5		5	PTPRC	1	198665779	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	57383	198665779	50584842	675	68920											
PTPRC	5788	broad.mit.edu	37	chr1	198718811	198718811	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatatagattgacatgagAgtttcaatttcaatgctaca	6	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198718811	G	G	198718811	1	3	61	0	1	0	0	0	0	0	0	0	12905	319	11	5		5	PTPRC	1	198718811	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	53032	198718811	50531810	676	68921											
PTPRC	5788	broad.mit.edu	37	chr1	198721222	198721222	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgccagcacttaaatagattCtggatttttataagtaggtt	8	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198721222	G	G	198721222	1	3	61	0	1	0	0	0	0	0	0	0	12905	928	32	4		4	PTPRC	1	198721222	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2411	198721222	50529399	677	68922											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200816329	200816329	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taacattttaaatttattttCcattgcagtggggaaggagc	9	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200816329	A	A	200816329	1	1	61	0	1	0	0	0	0	0	0	0	2638	870	30	3		3	CAMSAP1L1	1	200816329	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2095107	200816329	48434292	678	68923											
C1orf106	55765	broad.mit.edu	37	chr1	200882535	200882535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaggggctgagtgccaGggcctgctgctgctgctgct	18	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200882535	T	T	200882535	1	4	61	0	1	0	0	0	0	0	0	0	2000	1015	35	2		2	C1orf106	1	200882535	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66206	200882535	48368086	679	68924											
KIF21B	23046	broad.mit.edu	37	chr1	200974190	200974190	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttcgcacatgcagagcaTctgacaatgtgcacagtatt	8	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200974190	C	C	200974190	1	2	61	0	1	0	0	0	0	0	0	0	8359	1450	50	5		5	KIF21B	1	200974190	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	91655	200974190	48276431	680	68925											
CACNA1S	779	broad.mit.edu	37	chr1	201021903	201021903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaattcccttcattgcgGgccacatcagacctgaagcc	7	15	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201021903	T	T	201021903	1	4	61	0	1	0	0	0	0	0	0	0	2573	1247	43	2		2	CACNA1S	1	201021903	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47713	201021903	48228718	681	68926											
CACNA1S	779	broad.mit.edu	37	chr1	201041853	201041853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctacttcaccccagcaccCtgctccagtccagtctccag	5	21	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201041853	A	A	201041853	1	1	61	0	1	0	0	0	0	0	0	0	2573	696	24	2		2	CACNA1S	1	201041853	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19950	201041853	48208768	682	68927											
CACNA1S	779	broad.mit.edu	37	chr1	201061223	201061223	+	Frame_Shift_Del	DEL	C	-	-													ttggatgacgttaacctgttCcagaatcacggtgaagaccc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201061223	-	-	201061223	7	5	61	1	0	1	0	1	0	0	0	0	2573	864	30	0	5367	0	CACNA1S	1	201061223	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	19370	201061223	48189398	683	68928											
TNNT2	7139	broad.mit.edu	37	chr1	201334856	201334856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacccagggactgagggtGtccaggacaggcagggccct	17	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201334856	T	T	201334856	1	4	61	0	1	0	0	0	0	0	0	0	16454	1392	48	3		3	TNNT2	1	201334856	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	273633	201334856	47915765	684	68929											
LAD1	3898	broad.mit.edu	37	chr1	201352395	201352395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggggaaagggccatgCccactactcatcctgcaccc	13	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201352395	A	A	201352395	1	1	61	0	1	0	0	0	0	0	0	0	8671	754	26	3		3	LAD1	1	201352395	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17539	201352395	47898226	685	68930											
LMOD1	25802	broad.mit.edu	37	chr1	201869593	201869593	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcttccttcttggtggccActgccctctcctctcctctc	5	20	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201869593	G	G	201869593	3	3	61	1	0	0	0	0	1	0	0	0	8930	159	6	5	1262	5	LMOD1	1	201869593	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	517198	201869593	47381028	686	68931											
ELF3	1999	broad.mit.edu	37	chr1	201981952	201981952	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttgttccctctggctcccAgcaccataactcaggccttc	6	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201981952	T	T	201981952	1	4	61	0	1	0	0	0	0	0	0	0	5097	203	7	5		5	ELF3	1	201981952	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	112359	201981952	47268669	687	68932											
UBE2T	29089	broad.mit.edu	37	chr1	202304773	202304773	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatacatgatttgatacctaCgagctcgcaggtcatccatt	7	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202304773	A	A	202304773	5	1	61	1	0	0	0	0	0	0	1	0	16999	550	19	3	507	3	UBE2T	1	202304773	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	322821	202304773	46945848	688	68933											
PPP1R12B	4660	broad.mit.edu	37	chr1	202391820	202391820	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccctctgaccttgcagaAgagccagccatgaaggatct	10	12	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202391820	G	G	202391820	2	3	61	1	0	0	0	0	0	0	0	1	12456	69	3	5		5	PPP1R12B	1	202391820	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	87047	202391820	46858801	689	68934											
PPP1R12B	4660	broad.mit.edu	37	chr1	202407883	202407883	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgagagaacagcatgtgGgagctggtgttcaccttgaa	14	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202407883	C	C	202407883	1	2	61	0	1	0	0	0	0	0	0	0	12456	1247	43	4		4	PPP1R12B	1	202407883	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16063	202407883	46842738	690	68935											
KDM5B	10765	broad.mit.edu	37	chr1	202718210	202718210	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcatctcatcgtgggaaaAcacacaatatcgatgaagca	8	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202718210	G	G	202718210	3	3	61	1	0	0	0	0	1	0	0	0	8204	43	2	5	2811	5	KDM5B	1	202718210	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	310327	202718210	46532411	691	68936											
PPFIA4	8497	broad.mit.edu	37	chr1	203015032	203015032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaagcgctacctggctGctcagcgtgaggcaacatcc	13	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203015032	T	T	203015032	3	4	61	1	0	0	0	0	1	0	0	0	12408	1334	46	3		3	PPFIA4	1	203015032	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	296822	203015032	46235589	692	68937											
PPFIA4	8497	broad.mit.edu	37	chr1	203029682	203029682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacaaagggctctccctGgtcttcaggaggatatgatg	11	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203029682	T	T	203029682	1	4	61	0	1	0	0	0	0	0	0	0	12408	1363	47	2		2	PPFIA4	1	203029682	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14650	203029682	46220939	693	68938											
MYOG	4656	broad.mit.edu	37	chr1	203054839	203054839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccctcagtgtggccgccCgccgccggtccacggacacc	11	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203054839	A	A	203054839	3	1	61	1	0	0	0	0	1	0	0	0	10184	652	23	1	435	1	MYOG	1	203054839	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	25157	203054839	46195782	694	68939											
CHIT1	1118	broad.mit.edu	37	chr1	203188234	203188235	+	Intron	DNP	GG	CT	CT													gtggagatttatgaaatgttGggacatttaaaggagactca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	203188235	CT	CT	203188234	1	2	61	0	1	0	0	0	0	0	0	0	3377	1363	47	4		4	CHIT1	1	203188234	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	133395	203188234	46062387	695	68940											
FMOD	2331	broad.mit.edu	37	chr1	203225406	203225406	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaaagtgccagtgaagAaatctatatgagatactcca	8	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203225406	C	C	203225406	1	2	61	0	1	0	0	0	0	0	0	0	6017	261	9	5		5	FMOD	1	203225406	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	37172	203225406	46025215	696	68941											
FMOD	2331	broad.mit.edu	37	chr1	203226165	203226165	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgggggcagggcatagcTgaacaaaaggcagcagaaac	14	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203226165	A	A	203226165	1	1	61	0	1	0	0	0	0	0	0	0	6017	1595	55	5		5	FMOD	1	203226165	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	759	203226165	46024456	697	68942											
FMOD	2331	broad.mit.edu	37	chr1	203270626	203270626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaggaggaagaggaggaGgaagggcaggaagggagaag	22	1	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203270626	T	T	203270626	1	4	61	0	1	0	0	0	0	0	0	0	6017	1015	35	2		2	FMOD	1	203270626	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44461	203270626	45979995	698	68943											
PRELP	5549	broad.mit.edu	37	chr1	203453258	203453258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacaacaggctggaacacCtgtacctcaacaacaatagc	6	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203453258	A	A	203453258	3	1	61	1	0	0	0	0	1	0	0	0	12579	680	24	2	948	2	PRELP	1	203453258	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	182632	203453258	45797363	699	68944											
ATP2B4	493	broad.mit.edu	37	chr1	203690707	203690707	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgctactatatgtactcatAcagtactcttgagtacagtg	7	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203690707	T	T	203690707	1	4	61	0	1	0	0	0	0	0	0	0	1146	406	14	5		5	ATP2B4	1	203690707	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	237449	203690707	45559914	700	68945											
ATP2B4	493	broad.mit.edu	37	chr1	203709150	203709151	+	3'UTR	INS	-	A	A													aggcaagagcacagacttacINSaaggatttcaacttaagctt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203709151	A	A	203709150	6	5	61	0	1	1	1	0	0	0	0	0	1146	493	17	0		0	ATP2B4	1	203709150	3'UTR	INS	-	TCGA-17-Z031-01A-01W-0746-08	18443	203709150	45541471	701	68946											
ZC3H11A	9877	broad.mit.edu	37	chr1	203809456	203809456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtttccaagtctcttaaGgagcgattaggcatgtcagc	10	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203809456	T	T	203809456	3	4	61	1	0	0	0	0	1	0	0	0	17686	991	35	2	1034	2	ZC3H11A	1	203809456	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	100306	203809456	45441165	702	68947											
REN	5972	broad.mit.edu	37	chr1	204130499	204130499	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcaaagacgactttgaaGgtctggggtggggtgccgat	17	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204130499	T	T	204130499	2	4	61	1	0	0	0	0	0	0	0	1	13332	987	35	2		2	REN	1	204130499	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	321043	204130499	45120122	703	68948											
PIK3C2B	5287	broad.mit.edu	37	chr1	204400625	204400625	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgcgtgcaaggagagcTtggccagcagggggagcact	16	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204400625	G	G	204400625	1	3	61	0	1	0	0	0	0	0	0	0	12005	1624	56	5		5	PIK3C2B	1	204400625	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	270126	204400625	44849996	704	68949											
LRRN2	10446	broad.mit.edu	37	chr1	204588546	204588546	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccgccaatcatgagtatcTccaagttgggcagcatttca	9	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204588546	C	C	204588546	3	2	61	1	0	0	0	0	1	0	0	0	9122	1551	54	5	1570	5	LRRN2	1	204588546	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	187921	204588546	44662075	705	68950											
NFASC	23114	broad.mit.edu	37	chr1	204945843	204945843	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccatctttggggtggcagAgcgggaccagggcagttaca	16	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204945843	T	T	204945843	3	4	61	1	0	0	0	0	1	0	0	0	10454	304	11	5	1860	5	NFASC	1	204945843	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	357297	204945843	44304778	706	68951											
NFASC	23114	broad.mit.edu	37	chr1	204956804	204956804	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatggaggggccaacgaaaCagttcccaataggattaggg	15	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204956804	G	G	204956804	1	3	61	0	1	0	0	0	0	0	0	0	10454	493	17	4		4	NFASC	1	204956804	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10961	204956804	44293817	707	68952											
NFASC	23114	broad.mit.edu	37	chr1	204982007	204982007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactataggtgcgtgatctcCctcctcctctctcaggcagg	10	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204982007	T	T	204982007	1	4	61	0	1	0	0	0	0	0	0	0	10454	638	22	4		4	NFASC	1	204982007	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	25203	204982007	44268614	708	68953											
RAB7L1	8934	broad.mit.edu	37	chr1	205739262	205739262	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcactaactggcactaatgTgagccagcaacatgtgaaag	11	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205739262	A	A	205739262	1	1	61	0	1	0	0	0	0	0	0	0	13063	1711	59	5		5	RAB7L1	1	205739262	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	757255	205739262	43511359	709	68954											
PM20D1	148811	broad.mit.edu	37	chr1	205818813	205818813	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcttccaggttaggcagGgcacaccagagttccaggag	15	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205818813	C	C	205818813	1	2	61	0	1	0	0	0	0	0	0	0	12223	1247	43	4		4	PM20D1	1	205818813	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	79551	205818813	43431808	710	68955											
CTSE	1510	broad.mit.edu	37	chr1	206318450	206318450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagagtgccaaggaacccCtcatcaactacttggatgtg	9	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206318450	A	A	206318450	3	1	61	1	0	0	0	0	1	0	0	0	4067	681	24	2	214	2	CTSE	1	206318450	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	499637	206318450	42932171	711	68956											
IL24	11009	broad.mit.edu	37	chr1	207075497	207075497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagggcgcctcagagaccCaatgcagaatgtaatgcagg	13	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207075497	A	A	207075497	1	1	61	0	1	0	0	0	0	0	0	0	7747	609	21	2		2	IL24	1	207075497	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	757047	207075497	42175124	712	68957											
FCAMR	83953	broad.mit.edu	37	chr1	207132924	207132924	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctagaatttagctcttctAcattgaaaagtcctggcagg	9	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207132924	G	G	207132924	1	3	61	0	1	0	0	0	0	0	0	0	5829	406	14	5		5	FCAMR	1	207132924	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	57427	207132924	42117697	713	68958											
C4BPA	722	broad.mit.edu	37	chr1	207289901	207289902	+	Intron	INS	-	TATGTATA	TATGTATA													tgtgtgtgtgtgtgtgtgtgINStgtataatgtttttgacttg					rs60509489		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TATGTATA	207289902	TATGTATA	TATGTATA	207289901	6	5	61	0	1	1	1	0	0	0	0	0	2272	1392	48	0		0	C4BPA	1	207289901	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	156977	207289901	41960720	714	68959											
CR1	1378	broad.mit.edu	37	chr1	207680057	207680057	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattctgtttctttcctgtAggtaaatcatgtcgtaatcc	6	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207680057	T	T	207680057	5	4	61	1	0	0	0	0	0	0	1	0	3872	434	15	5	310	5	CR1	1	207680057	Splice_Site	SNP	A	TCGA-17-Z031-01A-01W-0746-08	390156	207680057	41570564	715	68960											
CR1	1378	broad.mit.edu	37	chr1	207696917	207696917	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttctgtcattcattattTaaactgactgttatttatcc	4	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207696917	G	G	207696917	1	3	61	0	1	0	0	0	0	0	0	0	3872	1769	61	5		5	CR1	1	207696917	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16860	207696917	41553704	716	68961											
CR1	1378	broad.mit.edu	37	chr1	207726002	207726002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaccatcagaaccgcgtGttttcttcaggaagctacat	9	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207726002	T	T	207726002	1	4	61	0	1	0	0	0	0	0	0	0	3872	1392	48	3		3	CR1	1	207726002	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29085	207726002	41524619	717	68962											
CR1	1378	broad.mit.edu	37	chr1	207800118	207800118	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaggctgggtgcgatggctCaggcctgtaatccctgcact	14	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207800118	A	A	207800118	1	1	61	0	1	0	0	0	0	0	0	0	3872	841	29	3		3	CR1	1	207800118	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	74116	207800118	41450503	718	68963											
CR1L	1379	broad.mit.edu	37	chr1	207867583	207867584	+	Intron	DNP	CT	TA	TA													acaactttgtaaaaatgtacCtacgtgttagcaaagaataa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	207867584	TA	TA	207867583	1	4	61	0	1	0	0	0	0	0	0	0	3873	696	24	4		4	CR1L	1	207867583	Intron	DNP	CT	TCGA-17-Z031-01A-01W-0746-08	67465	207867583	41383038	719	68964											
PLXNA2	5362	broad.mit.edu	37	chr1	208233863	208233863	+	Intron	SNP	G	A	A													caggatgagaccccctgaggGtggaggtgagggaggagggg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208233863	A	A	208233863	1	1	61	0	1	0	0	0	0	0	0	0	12215	1276	44	4		4	PLXNA2	1	208233863	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	366280	208233863	41016758	720	68965	317	2									
PLXNA2	5362	broad.mit.edu	37	chr1	208233871	208233871	+	Intron	SNP	G	A	A													gaccccctgagggtggaggtGagggaggagggggccctggg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208233871	A	A	208233871	1	1	61	0	1	0	0	0	0	0	0	0	12215	1305	45	4		4	PLXNA2	1	208233871	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8	208233871	41016750	721	68966	317	2									
PLXNA2	5362	broad.mit.edu	37	chr1	208272429	208272429	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcctgtgtcctgtcttctCaagaagacttttactgtact	8	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208272429	T	T	208272429	1	4	61	0	1	0	0	0	0	0	0	0	12215	841	29	4		4	PLXNA2	1	208272429	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38558	208272429	40978192	722	68967											
PLXNA2	5362	broad.mit.edu	37	chr1	208296759	208296759	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatatcaggcagctggattCtttcatttttaccatcaggg	9	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208296759	A	A	208296759	1	1	61	0	1	0	0	0	0	0	0	0	12215	928	32	3		3	PLXNA2	1	208296759	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24330	208296759	40953862	723	68968											
LAMB3	3914	broad.mit.edu	37	chr1	209789870	209789870	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacagctcctctgcctctgTcttcacactctggatccggg	8	15	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209789870	C	C	209789870	3	2	61	1	0	0	0	0	1	0	0	0	8684	1667	58	5	198	5	LAMB3	1	209789870	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1493111	209789870	39460751	724	68969											
LAMB3	3914	broad.mit.edu	37	chr1	209808836	209808836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcactgcaacctccgcCtcctaggttccagcgattct	8	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209808836	A	A	209808836	1	1	61	0	1	0	0	0	0	0	0	0	8684	696	24	2		2	LAMB3	1	209808836	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18966	209808836	39441785	725	68970											
HSD11B1	3290	broad.mit.edu	37	chr1	209879155	209879155	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttccttttggggttccccaGagatgctccaaggaaagaaa	10	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209879155	T	T	209879155	5	4	61	1	0	0	0	0	0	0	1	0	7442	956	33	3	94	3	HSD11B1	1	209879155	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	70319	209879155	39371466	726	68971											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209943814	209943815	+	Intron	DEL	GT	-	-													gtatgtgtgtgcatgtggagGtgtgtgtgtgcatgtggaag					rs34097069		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	209943815	-	-	209943814	6	5	61	0	1	1	0	1	0	0	0	0	16566	1276	44	0		0	TRAF3IP3	1	209943814	Intron	DEL	GT	TCGA-17-Z031-01A-01W-0746-08	64659	209943814	39306807	727	68972											
C1orf107	27042	broad.mit.edu	37	chr1	210003483	210003483	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaagcaaagccacagatTtgtcaactggtaatgctttc	9	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210003483	G	G	210003483	3	3	61	1	0	0	0	0	1	0	0	0	2001	1829	64	5	144	5	C1orf107	1	210003483	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	59669	210003483	39247138	728	68973											
SYT14	255928	broad.mit.edu	37	chr1	210183268	210183268	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttagaattaacctcaactCttcttctttcttatcctcaa	1	12	6	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210183268	G	G	210183268	1	3	61	0	1	0	0	0	0	0	0	0	15589	928	32	4		4	SYT14	1	210183268	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	179785	210183268	39067353	729	68974											
HHAT	55733	broad.mit.edu	37	chr1	210522132	210522132	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggatggagtaagttcacAgggaggaggaagcttgattg	17	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210522132	T	T	210522132	1	4	61	0	1	0	0	0	0	0	0	0	7156	203	7	5		5	HHAT	1	210522132	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	338864	210522132	38728489	730	68975											
HHAT	55733	broad.mit.edu	37	chr1	210811209	210811210	+	Intron	INS	-	AAG	AAG													gagactccgtctcaaaaaaaINSaaaaaaggggggggcaaagg					rs145354854		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAG	210811210	AAG	AAG	210811209	6	5	61	0	1	1	1	0	0	0	0	0	7156	29	1	0		0	HHAT	1	210811209	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	289077	210811209	38439412	731	68976											
KCNH1	3756	broad.mit.edu	37	chr1	211033650	211033650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgacatgtcaggctatgcGctaaagagatgtcctcatag	11	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211033650	T	T	211033650	1	4	61	0	1	0	0	0	0	0	0	0	8101	1102	38	3		3	KCNH1	1	211033650	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	222441	211033650	38216971	732	68977											
KCNH1	3756	broad.mit.edu	37	chr1	211255890	211255890	+	Intron	SNP	A	T	T													tgacacttttaatctcaagcAagctgaaacagagcttttcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211255890	T	T	211255890	1	4	61	0	1	0	0	0	0	0	0	0	8101	145	5	5		5	KCNH1	1	211255890	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	222240	211255890	37994731	733	68978	318	2									
KCNH1	3756	broad.mit.edu	37	chr1	211255892	211255892	+	Intron	SNP	G	T	T													acacttttaatctcaagcaaGctgaaacagagcttttccag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211255892	T	T	211255892	1	4	61	0	1	0	0	0	0	0	0	0	8101	986	34	3		3	KCNH1	1	211255892	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2	211255892	37994729	734	68979	318	2									
DTL	51514	broad.mit.edu	37	chr1	212240075	212240075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtctggggagaaaagtcGttttttagcaccttgttccc	10	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212240075	T	T	212240075	1	4	61	0	1	0	0	0	0	0	0	0	4827	1160	40	3		3	DTL	1	212240075	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	984183	212240075	37010546	735	68980											
FLVCR1	28982	broad.mit.edu	37	chr1	213032578	213032578	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagatccttaaaagaccgGaaaaagtcataggccgtgag	11	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213032578	T	T	213032578	1	4	61	0	1	0	0	0	0	0	0	0	6003	1189	41	3		3	FLVCR1	1	213032578	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	792503	213032578	36218043	736	68981											
PTPN14	5784	broad.mit.edu	37	chr1	214545864	214545864	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggaaaagctacaacaatCaattatctccaggggaaaaa	9	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214545864	A	A	214545864	1	1	61	0	1	0	0	0	0	0	0	0	12889	841	29	3		3	PTPN14	1	214545864	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1513286	214545864	34704757	737	68982											
PTPN14	5784	broad.mit.edu	37	chr1	214557669	214557669	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggtcagatggactgacaAgtttgttgctgtagaccccc	11	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214557669	C	C	214557669	3	2	61	1	0	0	0	0	1	0	0	0	12889	72	3	5	2062	5	PTPN14	1	214557669	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11805	214557669	34692952	738	68983											
PTPN14	5784	broad.mit.edu	37	chr1	214576226	214576226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccctctgcctgccttacCtgtgggctttgtgttcttgg	10	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214576226	A	A	214576226	3	1	61	1	0	0	0	0	1	0	0	0	12889	695	24	2	3038	2	PTPN14	1	214576226	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18557	214576226	34674395	739	68984											
PTPN14	5784	broad.mit.edu	37	chr1	214576367	214576367	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttgcttgcaaatcttaaAgctcccttcctcagatgttc	5	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214576367	C	C	214576367	1	2	61	0	1	0	0	0	0	0	0	0	12889	87	3	5		5	PTPN14	1	214576367	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	141	214576367	34674254	740	68985											
KCTD3	51133	broad.mit.edu	37	chr1	215751502	215751502	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatatgaataggaaaaactGctccttgattattgagtttt	8	5	0	3	rs140073774	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215751502	A	A	215751502	1	1	61	0	1	0	0	0	0	0	0	0	8180	1334	46	4		4	KCTD3	1	215751502	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1175135	215751502	33499119	741	68986											
KCTD3	51133	broad.mit.edu	37	chr1	215760009	215760009	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggagtgttcaggatggGggaagtggaagtgaaattgg	19	1	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215760009	T	T	215760009	2	4	61	1	0	0	0	0	0	0	0	1	8180	1219	43	2		2	KCTD3	1	215760009	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8507	215760009	33490612	742	68987											
USH2A	7399	broad.mit.edu	37	chr1	215808100	215808100	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcagaaagcatttttgtcAtctctggccctgctatttga	7	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215808100	G	G	215808100	1	3	61	0	1	0	0	0	0	0	0	0	17162	232	8	5		5	USH2A	1	215808100	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	48091	215808100	33442521	743	68988											
USH2A	7399	broad.mit.edu	37	chr1	215914668	215914669	+	Intron	DNP	CA	AG	AG													ttgattctgctgtgttggagCagtacgcattcttaaataac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	215914669	AG	AG	215914668	1	1	61	0	1	0	0	0	0	0	0	0	17162	725	25	3		3	USH2A	1	215914668	Intron	DNP	CA	TCGA-17-Z031-01A-01W-0746-08	106568	215914668	33335953	744	68989											
USH2A	7399	broad.mit.edu	37	chr1	215940052	215940052	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgcagtgtctgacctAgaaaaggctcgcttgaagtg	12	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215940052	G	G	215940052	3	3	61	1	0	0	0	0	1	0	0	0	17162	420	15	5	4658	5	USH2A	1	215940052	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	25384	215940052	33310569	745	68990											
USH2A	7399	broad.mit.edu	37	chr1	215955379	215955379	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagtttaggcaaactcctCttaccttgctactggtggca	9	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215955379	T	T	215955379	1	4	61	0	1	0	0	0	0	0	0	0	17162	928	32	4		4	USH2A	1	215955379	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15327	215955379	33295242	746	68991											
USH2A	7399	broad.mit.edu	37	chr1	216052420	216052420	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtatgtctccgttctggatGagtgggggtttccaagtgac	14	7	2	2	rs111033506		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216052420	T	T	216052420	2	4	61	1	0	0	0	0	0	0	0	1	17162	1277	45	3		3	USH2A	1	216052420	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	97041	216052420	33198201	747	68992											
USH2A	7399	broad.mit.edu	37	chr1	216074110	216074110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcactctagaaatccatGggtggagtcgccagacctca	10	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216074110	T	T	216074110	3	4	61	1	0	0	0	0	1	0	0	0	17162	1348	47	2	8306	2	USH2A	1	216074110	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21690	216074110	33176511	748	68993											
USH2A	7399	broad.mit.edu	37	chr1	216390989	216390989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcattgtagagtaagacGgcttgttttagccaatatat	9	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216390989	T	T	216390989	1	4	61	0	1	0	0	0	0	0	0	0	17162	1131	39	1		1	USH2A	1	216390989	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	316879	216390989	32859632	749	68994											
USH2A	7399	broad.mit.edu	37	chr1	216400573	216400573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctaacttgtatgttctGctaacatgtatgtaccacac	6	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216400573	T	T	216400573	1	4	61	0	1	0	0	0	0	0	0	0	17162	1334	46	3		3	USH2A	1	216400573	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9584	216400573	32850048	750	68995											
USH2A	7399	broad.mit.edu	37	chr1	216405275	216405275	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaagaaagagttaaattatTaaagcttataaagatgtacc	6	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216405275	A	A	216405275	1	1	61	0	1	0	0	0	0	0	0	0	17162	1769	61	5		5	USH2A	1	216405275	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4702	216405275	32845346	751	68996											
USH2A	7399	broad.mit.edu	37	chr1	216420601	216420601	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatttaaaaggtgaggatGggaaaatgatttcattcaag	10	2	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216420601	A	A	216420601	1	1	61	0	1	0	0	0	0	0	0	0	17162	1363	47	4		4	USH2A	1	216420601	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15326	216420601	32830020	752	68997											
USH2A	7399	broad.mit.edu	37	chr1	216420688	216420688	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattgagtgttttctcacaAgcaatgccatagggggccaa	10	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216420688	C	C	216420688	1	2	61	0	1	0	0	0	0	0	0	0	17162	87	3	5		5	USH2A	1	216420688	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	87	216420688	32829933	753	68998											
USH2A	7399	broad.mit.edu	37	chr1	216464504	216464504	+	Intron	DEL	A	-	-													cttgaccttagataaaagccAaaggctttatcatggctcca					rs76594975		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216464504	-	-	216464504	6	5	61	0	1	1	0	1	0	0	0	0	17162	145	5	0		0	USH2A	1	216464504	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	43816	216464504	32786117	754	68999											
USH2A	7399	broad.mit.edu	37	chr1	216495271	216495271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcagaggcatctatatGgctggcttgttgtgtcgcag	16	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216495271	T	T	216495271	3	4	61	1	0	0	0	0	1	0	0	0	17162	1348	47	2	14280	2	USH2A	1	216495271	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30767	216495271	32755350	755	69000											
USH2A	7399	broad.mit.edu	37	chr1	216498811	216498811	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacactctattatcagctgTgtctcctgcatcattaggaa	7	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216498811	C	C	216498811	3	2	61	1	0	0	0	0	1	0	0	0	17162	1696	59	5	14911	5	USH2A	1	216498811	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3540	216498811	32751810	756	69001											
USH2A	7399	broad.mit.edu	37	chr1	216570777	216570777	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctattgcggtgtttccagagGagattgacatataagccagt	11	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216570777	T	T	216570777	1	4	61	0	1	0	0	0	0	0	0	0	17162	1189	41	3		3	USH2A	1	216570777	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71966	216570777	32679844	757	69002											
USH2A	7399	broad.mit.edu	37	chr1	216591838	216591839	+	Intron	INS	-	T	T													gtttaaccaaatgttaaataINSttttttattttactcacctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216591839	T	T	216591838	6	5	61	0	1	1	1	0	0	0	0	0	17162	464	16	0		0	USH2A	1	216591838	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	21061	216591838	32658783	758	69003											
ESRRG	2104	broad.mit.edu	37	chr1	216824097	216824097	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatacctggtgtgtttcgcTgtacatcagatcctcctacc	8	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216824097	A	A	216824097	1	1	61	0	1	0	0	0	0	0	0	0	5304	1595	55	5		5	ESRRG	1	216824097	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	232259	216824097	32426524	759	69004											
ESRRG	2104	broad.mit.edu	37	chr1	217078646	217078646	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctccagtcatgttgcctTttttttttcctgttctttga	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217078646	A	A	217078646	1	1	61	0	1	0	0	0	0	0	0	0	5304	1856	64	5		5	ESRRG	1	217078646	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	254549	217078646	32171975	760	69005											
ESRRG	2104	broad.mit.edu	37	chr1	217089142	217089142	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatcaggagcttgctgtgTgcaccagaagtgctgatggt	13	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217089142	A	A	217089142	1	1	61	0	1	0	0	0	0	0	0	0	5304	1711	59	5		5	ESRRG	1	217089142	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10496	217089142	32161479	761	69006											
ESRRG	2104	broad.mit.edu	37	chr1	217241436	217241436	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtacaaggtcatttctctcTgcatagagctacctcaattc	6	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217241436	G	G	217241436	1	3	61	0	1	0	0	0	0	0	0	0	5304	1595	55	5		5	ESRRG	1	217241436	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	152294	217241436	32009185	762	69007											
SPATA17	128153	broad.mit.edu	37	chr1	217915222	217915222	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttggatggatatggatgAtggttgcccctcaaaaaaac	11	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217915222	T	T	217915222	1	4	61	0	1	0	0	0	0	0	0	0	15118	348	12	5		5	SPATA17	1	217915222	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	673786	217915222	31335399	763	69008											
SPATA17	128153	broad.mit.edu	37	chr1	218036261	218036262	+	Intron	DNP	GG	TT	TT													taacacttaaaaaatcaaatGgggttgacttaactatcaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	218036262	TT	TT	218036261	1	4	61	0	1	0	0	0	0	0	0	0	15118	1363	47	2		2	SPATA17	1	218036261	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	121039	218036261	31214360	764	69009											
TGFB2	7042	broad.mit.edu	37	chr1	218607388	218607388	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcatgctgtcagaatgccAactcagccttttctcttgct	7	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218607388	T	T	218607388	1	4	61	0	1	0	0	0	0	0	0	0	15941	145	5	5		5	TGFB2	1	218607388	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	571127	218607388	30643233	765	69010											
LYPLAL1	127018	broad.mit.edu	37	chr1	219347115	219347115	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctcctcagagagcgggcCagcagcgctgcgcatgcgcg	15	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219347115	T	T	219347115	1	4	61	0	1	0	0	0	0	0	0	0	9206	609	21	4		4	LYPLAL1	1	219347115	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	739727	219347115	29903506	766	69011											
LYPLAL1	127018	broad.mit.edu	37	chr1	219373330	219373330	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggatattagacacctggAcagctagctgcttcctttgt	9	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219373330	T	T	219373330	1	4	61	0	1	0	0	0	0	0	0	0	9206	290	10	5		5	LYPLAL1	1	219373330	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	26215	219373330	29877291	767	69012											
EPRS	2058	broad.mit.edu	37	chr1	220196025	220196025	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtaccaagagcaaatgcGtcattttttaattaaagaag	7	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220196025	A	A	220196025	1	1	61	0	1	0	0	0	0	0	0	0	5233	1160	40	4		4	EPRS	1	220196025	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	822695	220196025	29054596	768	69013											
MARK1	4139	broad.mit.edu	37	chr1	220815660	220815660	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgttagggaggctgcatGgtttggactgggctgtattc	16	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220815660	A	A	220815660	1	1	61	0	1	0	0	0	0	0	0	0	9404	1363	47	4		4	MARK1	1	220815660	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	619635	220815660	28434961	769	69014											
HLX	3142	broad.mit.edu	37	chr1	221058127	221058127	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgcttactgtatgttgGcgacttggtagggcaggaga	15	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221058127	T	T	221058127	1	4	61	0	1	0	0	0	0	0	0	0	7283	1218	42	3		3	HLX	1	221058127	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	242467	221058127	28192494	770	69015											
HHIPL2	79802	broad.mit.edu	37	chr1	222711642	222711642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacatgtacatattcactGgggacgggggacaggctgga	15	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222711642	T	T	222711642	1	4	61	0	1	0	0	0	0	0	0	0	7161	1363	47	2		2	HHIPL2	1	222711642	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1653515	222711642	26538979	771	69016											
MIA3	375056	broad.mit.edu	37	chr1	222803008	222803008	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtggaaaaagaacgccctCtggcagataagaaagcacag	12	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222803008	G	G	222803008	3	3	61	1	0	0	0	0	1	0	0	0	9658	912	32	4	2460	4	MIA3	1	222803008	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	91366	222803008	26447613	772	69017											
AIDA	64853	broad.mit.edu	37	chr1	222867507	222867507	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttttatcacaataatgcaGaataatttattttccttgta	4	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222867507	T	T	222867507	1	4	61	0	1	0	0	0	0	0	0	0	423	957	33	3		3	AIDA	1	222867507	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	64499	222867507	26383114	773	69018											
CAPN2	824	broad.mit.edu	37	chr1	223943328	223943328	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgggcgaggacatgcacAccatcggctttggcatctat	12	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223943328	G	G	223943328	3	3	61	1	0	0	0	0	1	0	0	0	2653	159	6	5	1327	5	CAPN2	1	223943328	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1075821	223943328	25307293	774	69019											
CNIH4	29097	broad.mit.edu	37	chr1	224563574	224563574	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacactacagtgcacagttgAggagccagagacttcttaaa	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224563574	T	T	224563574	1	4	61	0	1	0	0	0	0	0	0	0	3637	319	11	5		5	CNIH4	1	224563574	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	620246	224563574	24687047	775	69020											
CNIH3	149111	broad.mit.edu	37	chr1	224922382	224922383	+	Missense_Mutation	DNP	CC	AA	AA													tgtaagctggccttctatctCctctccttcttctactacct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	224922383	AA	AA	224922382	3	1	61	1	0	0	0	0	1	0	0	0	3636	842	30	3	447	3	CNIH3	1	224922382	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	358808	224922382	24328239	776	69021											
PARP1	142	broad.mit.edu	37	chr1	226590109	226590109	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagaaacagagggaagtaAgtaagcagttaacttttgac	11	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226590109	C	C	226590109	1	2	61	0	1	0	0	0	0	0	0	0	11548	87	3	5		5	PARP1	1	226590109	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1667727	226590109	22660512	777	69022											
PSEN2	5664	broad.mit.edu	37	chr1	227077837	227077837	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgccctgatatactcatgtGagtgagccccccgtgcctct	9	15	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227077837	T	T	227077837	1	4	61	0	1	0	0	0	0	0	0	0	12757	1305	45	3		3	PSEN2	1	227077837	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	487728	227077837	22172784	778	69023											
PRSS38	339501	broad.mit.edu	37	chr1	228033623	228033623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcaggcctgggactccCagttcacaaaaaactccctc	10	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228033623	A	A	228033623	1	1	61	0	1	0	0	0	0	0	0	0	12733	609	21	2		2	PRSS38	1	228033623	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	955786	228033623	21216998	779	69024											
OBSCN	84033	broad.mit.edu	37	chr1	228503557	228503557	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccccacagccaagaacaCggtggtgcgggggctggaga	15	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228503557	G	G	228503557	3	3	61	1	0	0	0	0	1	0	0	0	10907	536	19	4	13216	4	OBSCN	1	228503557	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	469934	228503557	20747064	780	69025											
OBSCN	84033	broad.mit.edu	37	chr1	228527605	228527605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctcagggccaggctatgGggcgcaggctgagtcctgat	18	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228527605	T	T	228527605	1	4	61	0	1	0	0	0	0	0	0	0	10907	1247	43	2		2	OBSCN	1	228527605	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	24048	228527605	20723016	781	69026											
OBSCN	84033	broad.mit.edu	37	chr1	228565292	228565292	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacctggacctgaggtcCgagaacatgatcatcaccga	10	13	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228565292	A	A	228565292	2	1	61	1	0	0	0	0	0	0	0	1	10907	639	23	1		1	OBSCN	1	228565292	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37687	228565292	20685329	782	69027											
ACTA1	58	broad.mit.edu	37	chr1	229567625	229567625	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctgttgtaggtggtcTcgtgaatgcccgccgactcc	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229567625	C	C	229567625	3	2	61	1	0	0	0	0	1	0	0	0	191	1551	54	5	308	5	ACTA1	1	229567625	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1002333	229567625	19682996	783	69028											
NUP133	55746	broad.mit.edu	37	chr1	229631713	229631713	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcatgcttttctgaagaatCatctaattcccatttactga	5	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229631713	A	A	229631713	3	1	61	1	0	0	0	0	1	0	0	0	10849	826	29	3	2649	3	NUP133	1	229631713	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	64088	229631713	19618908	784	69029											
ABCB10	23456	broad.mit.edu	37	chr1	229676403	229676403	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttccttgctaactgcaTtacatggtccactttgctgg	7	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229676403	C	C	229676403	3	2	61	1	0	0	0	0	1	0	0	0	41	1493	52	5	1099	5	ABCB10	1	229676403	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	44690	229676403	19574218	785	69030											
GALNT2	2590	broad.mit.edu	37	chr1	230339028	230339028	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagccatccctgacacccgGcatgaccagtaagtacccca	8	16	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230339028	T	T	230339028	2	4	61	1	0	0	0	0	0	0	0	1	6275	1190	42	3		3	GALNT2	1	230339028	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	662625	230339028	18911593	786	69031											
GALNT2	2590	broad.mit.edu	37	chr1	230378907	230378907	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcatggagcagttttgAtctcatccagcaagtttaca	8	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230378907	T	T	230378907	1	4	61	0	1	0	0	0	0	0	0	0	6275	348	12	5		5	GALNT2	1	230378907	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	39879	230378907	18871714	787	69032											
PGBD5	79605	broad.mit.edu	37	chr1	230468654	230468654	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttgttgtaccagcagatCaaggacatgttccccttcat	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230468654	A	A	230468654	3	1	61	1	0	0	0	0	1	0	0	0	11879	825	29	3	377	3	PGBD5	1	230468654	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	89747	230468654	18781967	788	69033											
CAPN9	10753	broad.mit.edu	37	chr1	230916350	230916350	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagaagtctccgaccggttCaagctgccccctggggagta	13	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230916350	T	T	230916350	2	4	61	1	0	0	0	0	0	0	0	1	2658	825	29	4		4	CAPN9	1	230916350	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	447696	230916350	18334271	789	69034											
CAPN9	10753	broad.mit.edu	37	chr1	230927500	230927500	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcataagagagtagccacatCacagcccccaacagccctgg	8	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230927500	T	T	230927500	1	4	61	0	1	0	0	0	0	0	0	0	2658	841	29	4		4	CAPN9	1	230927500	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11150	230927500	18323121	790	69035											
TTC13	79573	broad.mit.edu	37	chr1	231067694	231067694	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacagaataagctatcctcaGaattatggaccaatatgtaa	6	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231067694	C	C	231067694	1	2	61	0	1	0	0	0	0	0	0	0	16806	957	33	4		4	TTC13	1	231067694	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	140194	231067694	18182927	791	69036											
TTC13	79573	broad.mit.edu	37	chr1	231097014	231097014	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtgatgatcccttgggttCgcagtctgagtcatggaagt	15	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231097014	A	A	231097014	4	1	61	1	0	0	0	0	0	1	0	0	16806	893	31	3	2363	3	TTC13	1	231097014	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	29320	231097014	18153607	792	69037											
ARV1	64801	broad.mit.edu	37	chr1	231115007	231115007	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagactataaccacggtgtGctgaagataaccatctgtgt	10	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231115007	T	T	231115007	2	4	61	1	0	0	0	0	0	0	0	1	1006	1306	46	3		3	ARV1	1	231115007	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17993	231115007	18135614	793	69038											
TRIM67	440730	broad.mit.edu	37	chr1	231337128	231337128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgctctgatcaagcgcGtccaggtgtctcaggagcag	13	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231337128	T	T	231337128	3	4	61	1	0	0	0	0	1	0	0	0	16665	1145	40	3	1417	3	TRIM67	1	231337128	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	222121	231337128	17913493	794	69039											
DISC1	27185	broad.mit.edu	37	chr1	231829629	231829629	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggcggctggcacggaGgccgggctacatgagaagct	19	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231829629	T	T	231829629	3	4	61	1	0	0	0	0	1	0	0	0	4578	1000	35	2	131	2	DISC1	1	231829629	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	492501	231829629	17420992	795	69040											
DISC1	27185	broad.mit.edu	37	chr1	231829710	231829710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacactgttccggttcccagGaggggtgtctggcgaggagt	16	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231829710	T	T	231829710	3	4	61	1	0	0	0	0	1	0	0	0	4578	1174	41	3	212	3	DISC1	1	231829710	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	81	231829710	17420911	796	69041											
DISC1	27185	broad.mit.edu	37	chr1	232042116	232042116	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagagagacgtaagtacaAtgcctgatatttttgcctgt	11	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232042116	G	G	232042116	1	3	61	0	1	0	0	0	0	0	0	0	4578	116	4	5		5	DISC1	1	232042116	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	212406	232042116	17208505	797	69042											
C1orf57	84284	broad.mit.edu	37	chr1	233086347	233086347	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcttgggggcggggcctgcGacacgcggtgggcgggtcct	21	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233086347	T	T	233086347	1	4	61	0	1	0	0	0	0	0	0	0	2071	1073	37	3		3	C1orf57	1	233086347	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1044231	233086347	16164274	798	69043											
PCNXL2	80003	broad.mit.edu	37	chr1	233134101	233134101	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccactcggggcattgttgCcacctgtcgtcggggcccct	12	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233134101	T	T	233134101	3	4	61	1	0	0	0	0	1	0	0	0	11686	739	26	4	738	4	PCNXL2	1	233134101	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47754	233134101	16116520	799	69044											
KIAA1804	84451	broad.mit.edu	37	chr1	233490644	233490644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattctcgaacagttgactGctattgaaggggcagtgatg	12	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233490644	T	T	233490644	3	4	61	1	0	0	0	0	1	0	0	0	8329	1319	46	3	1212	3	KIAA1804	1	233490644	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	356543	233490644	15759977	800	69045											
KIAA1804	84451	broad.mit.edu	37	chr1	233511714	233511714	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaacacagtctttcgacaAgaagaatttgaggatgtaaa	10	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233511714	G	G	233511714	2	3	61	1	0	0	0	0	0	0	0	1	8329	69	3	5		5	KIAA1804	1	233511714	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	21070	233511714	15738907	801	69046											
KCNK1	3775	broad.mit.edu	37	chr1	233783354	233783354	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcaacagggagggagggCtgccttgtcatttaagtttt	13	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233783354	T	T	233783354	1	4	61	0	1	0	0	0	0	0	0	0	8128	812	28	4		4	KCNK1	1	233783354	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	271640	233783354	15467267	802	69047											
SLC35F3	148641	broad.mit.edu	37	chr1	234075479	234075479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacttatgggctcacttgGggaagaaccacttacagaag	12	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234075479	T	T	234075479	1	4	61	0	1	0	0	0	0	0	0	0	14704	1247	43	2		2	SLC35F3	1	234075479	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	292125	234075479	15175142	803	69048											
B3GALNT2	148789	broad.mit.edu	37	chr1	235611629	235611629	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttacaggtaactgtcatttGagagaacgaatggacttttc	9	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235611629	C	C	235611629	1	2	61	0	1	0	0	0	0	0	0	0	1251	1305	45	4		4	B3GALNT2	1	235611629	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1536150	235611629	13638992	804	69049											
GNG4	2786	broad.mit.edu	37	chr1	235806052	235806052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttggaggcgcgggcctcCctgctgtcatcacacctcgg	12	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235806052	T	T	235806052	1	4	61	0	1	0	0	0	0	0	0	0	6593	638	22	4		4	GNG4	1	235806052	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	194423	235806052	13444569	805	69050											
LYST	1130	broad.mit.edu	37	chr1	235918832	235918832	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcgatgaagcattctaacAattcttgagttcctcgatga	7	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235918832	T	T	235918832	4	4	61	1	0	0	0	0	0	1	0	0	9216	131	5	5	4346	5	LYST	1	235918832	Nonsense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	112780	235918832	13331789	806	69051											
LYST	1130	broad.mit.edu	37	chr1	235927008	235927008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaagtgatccacccacCttggcctctcaaagtgctgg	9	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235927008	A	A	235927008	1	1	61	0	1	0	0	0	0	0	0	0	9216	696	24	2		2	LYST	1	235927008	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8176	235927008	13323613	807	69052											
NID1	4811	broad.mit.edu	37	chr1	236154433	236154433	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcacacacacacacccccAcacacatgcacgcatgcaca	4	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236154433	C	C	236154433	1	2	61	0	1	0	0	0	0	0	0	0	10509	174	6	5		5	NID1	1	236154433	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	227425	236154433	13096188	808	69053											
ERO1LB	56605	broad.mit.edu	37	chr1	236406744	236406744	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagttcacaaaagtgatcCcgtgaatcatcatatcttgc	6	10	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236406744	A	A	236406744	2	1	61	1	0	0	0	0	0	0	0	1	5282	610	22	2		2	ERO1LB	1	236406744	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	252311	236406744	12843877	809	69054											
HEATR1	55127	broad.mit.edu	37	chr1	236719125	236719125	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagtgctgggctcggaAgtccagggcttccaggaaaa	14	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236719125	C	C	236719125	3	2	61	1	0	0	0	0	1	0	0	0	7094	72	3	5	833	5	HEATR1	1	236719125	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	312381	236719125	12531496	810	69055											
ACTN2	88	broad.mit.edu	37	chr1	236894539	236894539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttttcatacaggatgacCccataggaaatattaacctg	8	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236894539	A	A	236894539	3	1	61	1	0	0	0	0	1	0	0	0	205	623	22	2	648	2	ACTN2	1	236894539	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	175414	236894539	12356082	811	69056											
ACTN2	88	broad.mit.edu	37	chr1	236922967	236922967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttgttcagttggtcaagTagagttgctcatcttgccct	9	9	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236922967	C	C	236922967	1	2	61	0	1	0	0	0	0	0	0	0	205	1653	57	5		5	ACTN2	1	236922967	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	28428	236922967	12327654	812	69057											
MTR	4548	broad.mit.edu	37	chr1	237008153	237008153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtggtgcttaactaggaGtgcaaagcagactcactctg	11	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237008153	T	T	237008153	1	4	61	0	1	0	0	0	0	0	0	0	10052	1044	36	3		3	MTR	1	237008153	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	85186	237008153	12242468	813	69058											
RYR2	6262	broad.mit.edu	37	chr1	237261754	237261754	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagatgtactgtcttagcaAatttcaggggtacaatccag	9	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237261754	T	T	237261754	1	4	61	0	1	0	0	0	0	0	0	0	13880	29	1	5		5	RYR2	1	237261754	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	253601	237261754	11988867	814	69059											
RYR2	6262	broad.mit.edu	37	chr1	237265479	237265479	+	Intron	DEL	G	-	-													ggaaggaccaggatttagacGggagcttgaggaacaggaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	237265479	-	-	237265479	6	5	61	0	1	1	0	1	0	0	0	0	13880	1131	39	0		0	RYR2	1	237265479	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	3725	237265479	11985142	815	69060											
RYR2	6262	broad.mit.edu	37	chr1	237494024	237494024	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaaatgtattaaacatgagGagtaatgacagtgtttcttg	9	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237494024	T	T	237494024	1	4	61	0	1	0	0	0	0	0	0	0	13880	1189	41	3		3	RYR2	1	237494024	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	228545	237494024	11756597	816	69061											
RYR2	6262	broad.mit.edu	37	chr1	237666808	237666808	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtggataccagccaggtAccaagatccactcgaatggc	10	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237666808	G	G	237666808	1	3	61	0	1	0	0	0	0	0	0	0	13880	406	14	5		5	RYR2	1	237666808	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	172784	237666808	11583813	817	69062											
RYR2	6262	broad.mit.edu	37	chr1	237666913	237666913	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgaatttcacagtaatacaGttgtacagttgacatgtagg	9	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237666913	C	C	237666913	1	2	61	0	1	0	0	0	0	0	0	0	13880	1044	36	4		4	RYR2	1	237666913	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	105	237666913	11583708	818	69063											
RYR2	6262	broad.mit.edu	37	chr1	237755023	237755023	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgttgcttattgttagtcCtctgaaatatttcagatttt	6	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237755023	A	A	237755023	1	1	61	0	1	0	0	0	0	0	0	0	13880	696	24	2		2	RYR2	1	237755023	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	88110	237755023	11495598	819	69064											
RYR2	6262	broad.mit.edu	37	chr1	237756932	237756932	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaaaaaggaaaagtgcatGaaaggttagttttcctcaat	9	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237756932	T	T	237756932	4	4	61	1	0	0	0	0	0	1	0	0	13880	1291	45	3	4562	3	RYR2	1	237756932	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1909	237756932	11493689	820	69065											
RYR2	6262	broad.mit.edu	37	chr1	237765499	237765499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgaattcagtatattaGtactgatatgaatcaaataa	6	3	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237765499	T	T	237765499	1	4	61	0	1	0	0	0	0	0	0	0	13880	1044	36	3		3	RYR2	1	237765499	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8567	237765499	11485122	821	69066											
RYR2	6262	broad.mit.edu	37	chr1	237768605	237768605	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtaatccagcatataaacaGaaccaacgacaaaaaccaca	4	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237768605	C	C	237768605	1	2	61	0	1	0	0	0	0	0	0	0	13880	957	33	4		4	RYR2	1	237768605	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3106	237768605	11482016	822	69067											
RYR2	6262	broad.mit.edu	37	chr1	237774372	237774373	+	Intron	INS	-	A	A													ttccggtagtggtgcggggcINSaggggtggttctaaagaaac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237774373	A	A	237774372	6	5	61	0	1	1	1	0	0	0	0	0	13880	725	25	0		0	RYR2	1	237774372	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	5767	237774372	11476249	823	69068											
RYR2	6262	broad.mit.edu	37	chr1	237777632	237777632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgacggaggagacgaagaGcatcaccctgttccctgatg	12	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237777632	T	T	237777632	3	4	61	1	0	0	0	0	1	0	0	0	13880	971	34	3	5350	3	RYR2	1	237777632	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3260	237777632	11472989	824	69069											
RYR2	6262	broad.mit.edu	37	chr1	237788801	237788801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaggctgaccagtgaatGttatttatgagggctggtaa	13	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237788801	T	T	237788801	1	4	61	0	1	0	0	0	0	0	0	0	13880	1392	48	3		3	RYR2	1	237788801	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11169	237788801	11461820	825	69070											
RYR2	6262	broad.mit.edu	37	chr1	237791135	237791135	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagctgatttctgagacCatggtccgatgggctcagga	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237791135	T	T	237791135	2	4	61	1	0	0	0	0	0	0	0	1	13880	581	21	4		4	RYR2	1	237791135	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2334	237791135	11459486	826	69071											
RYR2	6262	broad.mit.edu	37	chr1	237813402	237813402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactctctatttgtgggtgaGtggataacaaattctattcc	8	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237813402	T	T	237813402	1	4	61	0	1	0	0	0	0	0	0	0	13880	1044	36	3		3	RYR2	1	237813402	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22267	237813402	11437219	827	69072											
RYR2	6262	broad.mit.edu	37	chr1	237817540	237817540	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatataaaaggttttgatAgctcattgcttttataattg	6	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237817540	T	T	237817540	1	4	61	0	1	0	0	0	0	0	0	0	13880	435	15	5		5	RYR2	1	237817540	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4138	237817540	11433081	828	69073											
RYR2	6262	broad.mit.edu	37	chr1	237817804	237817804	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtattcctagttgaatactAtctttgctaaccaagacacg	6	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237817804	G	G	237817804	1	3	61	0	1	0	0	0	0	0	0	0	13880	464	16	5		5	RYR2	1	237817804	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	264	237817804	11432817	829	69074											
RYR2	6262	broad.mit.edu	37	chr1	237831190	237831190	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcatttaaggctatggCagaaatgatggctgaaaact	10	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237831190	T	T	237831190	3	4	61	1	0	0	0	0	1	0	0	0	13880	710	25	4	8752	4	RYR2	1	237831190	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13386	237831190	11419431	830	69075											
RYR2	6262	broad.mit.edu	37	chr1	237843946	237843946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgcaaagaaaacctgaGgaccttgaagtggggctgta	13	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237843946	T	T	237843946	1	4	61	0	1	0	0	0	0	0	0	0	13880	1015	35	2		2	RYR2	1	237843946	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12756	237843946	11406675	831	69076											
RYR2	6262	broad.mit.edu	37	chr1	237855570	237855570	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgaggataggaaaatgaAgattgatttctctttccact	9	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237855570	G	G	237855570	1	3	61	0	1	0	0	0	0	0	0	0	13880	87	3	5		5	RYR2	1	237855570	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11624	237855570	11395051	832	69077											
RYR2	6262	broad.mit.edu	37	chr1	237870112	237870113	+	Intron	DNP	GG	TT	TT													aatagctaccttgaaacacaGgagaaggagccagttgcagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	237870113	TT	TT	237870112	1	4	61	0	1	0	0	0	0	0	0	0	13880	1015	35	2		2	RYR2	1	237870112	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	14542	237870112	11380509	833	69078											
RYR2	6262	broad.mit.edu	37	chr1	237893643	237893643	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttactttgaagataaactgaTagaagatttagcagtatgtt	8	3	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237893643	A	A	237893643	3	1	61	1	0	0	0	0	1	0	0	0	13880	1406	49	5	11228	5	RYR2	1	237893643	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23531	237893643	11356978	834	69079											
RYR2	6262	broad.mit.edu	37	chr1	237923276	237923276	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattaacaacactttaaagtGggataatcggcagtgtcttg	10	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237923276	A	A	237923276	1	1	61	0	1	0	0	0	0	0	0	0	13880	1363	47	4		4	RYR2	1	237923276	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29633	237923276	11327345	835	69080											
RYR2	6262	broad.mit.edu	37	chr1	237947538	237947538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacagttcatatttgacGtggtcaacgaaggcggagag	13	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947538	T	T	237947538	3	4	61	1	0	0	0	0	1	0	0	0	13880	1145	40	3	12884	3	RYR2	1	237947538	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	24262	237947538	11303083	836	69081											
RYR2	6262	broad.mit.edu	37	chr1	237993907	237993907	+	Frame_Shift_Del	DEL	G	-	-													tttgaaacccacactttacaGgagcacaacttggctaatta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	237993907	-	-	237993907	7	5	61	1	0	1	0	1	0	0	0	0	13880	991	35	0	15143	0	RYR2	1	237993907	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	46369	237993907	11256714	837	69082											
ZP4	57829	broad.mit.edu	37	chr1	238048069	238048069	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaacagcttggttactcacGactgagatcaggacaggtca	10	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048069	T	T	238048069	2	4	61	1	0	0	0	0	0	0	0	1	18347	1072	37	3		3	ZP4	1	238048069	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54162	238048069	11202552	838	69083											
ZP4	57829	broad.mit.edu	37	chr1	238048727	238048727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactgtggctgactcaggGggtcagtgctgggtgttgcc	17	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048727	T	T	238048727	3	4	61	1	0	0	0	0	1	0	0	0	18347	1232	43	2	518	2	ZP4	1	238048727	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	658	238048727	11201894	839	69084											
ZP4	57829	broad.mit.edu	37	chr1	238050499	238050499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtcttagctgaacaccCagaagagattaactttttca	8	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050499	A	A	238050499	1	1	61	0	1	0	0	0	0	0	0	0	18347	609	21	2		2	ZP4	1	238050499	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1772	238050499	11200122	840	69085											
ZP4	57829	broad.mit.edu	37	chr1	238053589	238053589	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcaataagaggaacaagAgggaaatcagattcagatca	10	6	4	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053589	T	T	238053589	1	4	61	0	1	0	0	0	0	0	0	0	18347	319	11	5		5	ZP4	1	238053589	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3090	238053589	11197032	841	69086											
CHRM3	1131	broad.mit.edu	37	chr1	239762382	239762382	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgtagacactgctccattCcattcctttccatcactagg	6	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239762382	T	T	239762382	1	4	61	0	1	0	0	0	0	0	0	0	3409	870	30	4		4	CHRM3	1	239762382	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1708793	239762382	9488239	842	69087											
CHRM3	1131	broad.mit.edu	37	chr1	239936009	239936009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccccactgtacatgatgCctttctgtgactccctctct	5	16	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239936009	A	A	239936009	1	1	61	0	1	0	0	0	0	0	0	0	3409	754	26	3		3	CHRM3	1	239936009	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	173627	239936009	9314612	843	69088											
CHRM3	1131	broad.mit.edu	37	chr1	240070781	240070781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaataacagtacaacctcGcctttgtttccaaacatcag	4	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240070781	T	T	240070781	2	4	61	1	0	0	0	0	0	0	0	1	3409	1074	38	3		3	CHRM3	1	240070781	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	134772	240070781	9179840	844	69089											
CHRM3	1131	broad.mit.edu	37	chr1	240071185	240071185	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggcctgtgacctctggcTtgccattgactacgtagcca	10	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240071185	G	G	240071185	3	3	61	1	0	0	0	0	1	0	0	0	3409	1609	56	5	436	5	CHRM3	1	240071185	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	404	240071185	9179436	845	69090											
FMN2	56776	broad.mit.edu	37	chr1	240256720	240256720	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactccccgtctcagtccccTaatcagagccccaggatcaa	6	18	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240256720	A	A	240256720	2	1	61	1	0	0	0	0	0	0	0	1	6008	1509	53	5		5	FMN2	1	240256720	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	185535	240256720	8993901	846	69091											
FMN2	56776	broad.mit.edu	37	chr1	240256813	240256813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagccgccccggccaagaaGcaccgggccgacggcggcct	15	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240256813	T	T	240256813	3	4	61	1	0	0	0	0	1	0	0	0	6008	962	34	3	1406	3	FMN2	1	240256813	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	93	240256813	8993808	847	69092											
FMN2	56776	broad.mit.edu	37	chr1	240286662	240286662	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtaagtaggagaattcActtctgtccgtgaggcagat	12	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240286662	T	T	240286662	1	4	61	0	1	0	0	0	0	0	0	0	6008	174	6	5		5	FMN2	1	240286662	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29849	240286662	8963959	848	69093											
FMN2	56776	broad.mit.edu	37	chr1	240307735	240307735	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgatctctgtcaggtgctCatactccttgacatcttcac	6	13	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240307735	A	A	240307735	1	1	61	0	1	0	0	0	0	0	0	0	6008	841	29	3		3	FMN2	1	240307735	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21073	240307735	8942886	849	69094											
FMN2	56776	broad.mit.edu	37	chr1	240308566	240308566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttctttgtccttgtcccCggcatcccgccgctccttgc	8	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240308566	A	A	240308566	1	1	61	0	1	0	0	0	0	0	0	0	6008	667	23	1		1	FMN2	1	240308566	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	831	240308566	8942055	850	69095											
FMN2	56776	broad.mit.edu	37	chr1	240333725	240333725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgctaagctgaaggcgGgtgataactgtcatcccatt	12	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240333725	T	T	240333725	1	4	61	0	1	0	0	0	0	0	0	0	6008	1247	43	2		2	FMN2	1	240333725	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25159	240333725	8916896	851	69096											
FMN2	56776	broad.mit.edu	37	chr1	240334034	240334034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgtgaacactgtcaagGtggggcctggctctgtttgg	15	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240334034	T	T	240334034	1	4	61	0	1	0	0	0	0	0	0	0	6008	1276	44	3		3	FMN2	1	240334034	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	309	240334034	8916587	852	69097											
FMN2	56776	broad.mit.edu	37	chr1	240421379	240421379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaatattaaaatttgggCtgagggatatgatgtttgtt	11	2	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240421379	A	A	240421379	1	1	61	0	1	0	0	0	0	0	0	0	6008	812	28	3		3	FMN2	1	240421379	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	87345	240421379	8829242	853	69098											
FMN2	56776	broad.mit.edu	37	chr1	240439804	240439804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggttaagtagaggataaCaatgcacttgagatgagtca	14	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240439804	A	A	240439804	1	1	61	0	1	0	0	0	0	0	0	0	6008	493	17	3		3	FMN2	1	240439804	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18425	240439804	8810817	854	69099											
FMN2	56776	broad.mit.edu	37	chr1	240455908	240455909	+	Intron	INS	-	T	T													agaattccatccattgaaaaINStgtaccattgaccaaatcac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240455909	T	T	240455908	6	5	61	0	1	1	1	0	0	0	0	0	6008	116	4	0		0	FMN2	1	240455908	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	16104	240455908	8794713	855	69100											
FMN2	56776	broad.mit.edu	37	chr1	240555895	240555895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatttcctcccagaatagCgttataacatgctaagtgta	6	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240555895	A	A	240555895	1	1	61	0	1	0	0	0	0	0	0	0	6008	783	27	3		3	FMN2	1	240555895	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	99987	240555895	8694726	856	69101											
RGS7	6000	broad.mit.edu	37	chr1	240969648	240969648	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgcagaatgtgagatcggGtgtttactctgatggcccat	12	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240969648	C	C	240969648	1	2	61	0	1	0	0	0	0	0	0	0	13419	1276	44	4		4	RGS7	1	240969648	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	413753	240969648	8280973	857	69102											
RGS7	6000	broad.mit.edu	37	chr1	241083438	241083438	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactccgtggataagacggtCattcagaaataccacactgt	9	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241083438	G	G	241083438	1	3	61	0	1	0	0	0	0	0	0	0	13419	841	29	4		4	RGS7	1	241083438	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	113790	241083438	8167183	858	69103											
RGS7	6000	broad.mit.edu	37	chr1	241469818	241469818	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaacaccctcacatggccAtgtacacacgtccacacaca	4	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241469818	T	T	241469818	1	4	61	0	1	0	0	0	0	0	0	0	13419	232	8	5		5	RGS7	1	241469818	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	386380	241469818	7780803	859	69104											
FH	2271	broad.mit.edu	37	chr1	241667228	241667228	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatgctggaacagtgcgCcttgcgcatccagctgcggg	14	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241667228	A	A	241667228	1	1	61	0	1	0	0	0	0	0	0	0	5932	754	26	3		3	FH	1	241667228	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	197410	241667228	7583393	860	69105											
FH	2271	broad.mit.edu	37	chr1	241672065	241672065	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaatgtgcattgctgtGggaaaagtatcatttgagct	12	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241672065	A	A	241672065	2	1	61	1	0	0	0	0	0	0	0	1	5932	1335	47	4		4	FH	1	241672065	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4837	241672065	7578556	861	69106											
FH	2271	broad.mit.edu	37	chr1	241677012	241677012	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaagctttaataactgggGtctaaaattaatcagaaaaa	6	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241677012	A	A	241677012	3	1	61	1	0	0	0	0	1	0	0	0	5932	1275	44	4	1295	4	FH	1	241677012	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4947	241677012	7573609	862	69107											
KMO	8564	broad.mit.edu	37	chr1	241696258	241696258	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagctaacgtcaaagtatcAtgttgaatgttcactagtta	8	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241696258	T	T	241696258	1	4	61	0	1	0	0	0	0	0	0	0	8495	232	8	5		5	KMO	1	241696258	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19246	241696258	7554363	863	69108											
KMO	8564	broad.mit.edu	37	chr1	241715312	241715313	+	Intron	INS	-	GG	GG													acaaggaatgtcctgaggaaINSggccaagtcatcatagccgc					rs147430596	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	241715313	GG	GG	241715312	6	5	61	0	1	1	1	0	0	0	0	0	8495	87	3	0		0	KMO	1	241715312	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	19054	241715312	7535309	864	69109											
KMO	8564	broad.mit.edu	37	chr1	241757996	241757996	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaagggatcttcgaaactGggcagagaaaaaataaagtg	11	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241757996	C	C	241757996	1	2	61	0	1	0	0	0	0	0	0	0	8495	1363	47	4		4	KMO	1	241757996	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42684	241757996	7492625	865	69110											
CHML	1122	broad.mit.edu	37	chr1	241798502	241798502	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatctttatctgaaactgtGtgcatacaagttttatctcc	5	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241798502	A	A	241798502	2	1	61	1	0	0	0	0	0	0	0	1	3382	1368	48	4		4	CHML	1	241798502	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40506	241798502	7452119	866	69111											
SDCCAG8	10806	broad.mit.edu	37	chr1	243477949	243477949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagtttcccataagcagcaAgtttgttagatttttatcct	6	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243477949	T	T	243477949	1	4	61	0	1	0	0	0	0	0	0	0	14072	87	3	5		5	SDCCAG8	1	243477949	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1679447	243477949	5772672	867	69112											
SDCCAG8	10806	broad.mit.edu	37	chr1	243507425	243507425	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttttgttgtattttatctAtatgacctctagggggcacc	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243507425	C	C	243507425	1	2	61	0	1	0	0	0	0	0	0	0	14072	464	16	5		5	SDCCAG8	1	243507425	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29476	243507425	5743196	868	69113											
EFCAB2	84288	broad.mit.edu	37	chr1	245266399	245266399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagaggtggtcctctatGgtcaggagggagaccagaga	17	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245266399	T	T	245266399	1	4	61	0	1	0	0	0	0	0	0	0	4974	1363	47	2		2	EFCAB2	1	245266399	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1758974	245266399	3984222	869	69114											
SMYD3	64754	broad.mit.edu	37	chr1	246244804	246244804	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccaagctcaagcaattctCatgcctcagcctcctgagca	6	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246244804	A	A	246244804	1	1	61	0	1	0	0	0	0	0	0	0	14937	841	29	3		3	SMYD3	1	246244804	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	978405	246244804	3005817	870	69115											
SMYD3	64754	broad.mit.edu	37	chr1	246641978	246641978	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctggtacgtaagtgctcAtatatgcacacctgtcctcc	9	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246641978	G	G	246641978	1	3	61	0	1	0	0	0	0	0	0	0	14937	232	8	5		5	SMYD3	1	246641978	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	397174	246641978	2608643	871	69116											
AHCTF1	25909	broad.mit.edu	37	chr1	247025437	247025437	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagaagtagtaactgacaTggccaaacttttagctttct	7	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247025437	G	G	247025437	3	3	61	1	0	0	0	0	1	0	0	0	408	1464	51	5	3277	5	AHCTF1	1	247025437	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	383459	247025437	2225184	872	69117											
AHCTF1	25909	broad.mit.edu	37	chr1	247048798	247048798	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaagatgtacttacctaTtaaaaagcaaaacagtgagg	7	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247048798	C	C	247048798	3	2	61	1	0	0	0	0	1	0	0	0	408	1493	52	5	4207	5	AHCTF1	1	247048798	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23361	247048798	2201823	873	69118											
ZNF670	93474	broad.mit.edu	37	chr1	247202613	247202613	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcaggcgattcacccgccTtggcctcccaaagtgctggg	11	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247202613	G	G	247202613	1	3	61	0	1	0	0	0	0	0	0	0	18204	1624	56	5		5	ZNF670	1	247202613	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	153815	247202613	2048008	874	69119											
VN1R5	317705	broad.mit.edu	37	chr1	247420195	247420195	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggctatcttactgctGgtgagttttgtcttcacata	8	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247420195	T	T	247420195	2	4	61	1	0	0	0	0	0	0	0	1	17308	1335	47	2		2	VN1R5	1	247420195	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	217582	247420195	1830426	875	69120											
NLRP3	114548	broad.mit.edu	37	chr1	247592683	247592683	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcacaggctcatgctctcCgtccgagaggaggcagaact	12	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247592683	G	G	247592683	1	3	61	0	1	0	0	0	0	0	0	0	10573	667	23	4		4	NLRP3	1	247592683	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	172488	247592683	1657938	876	69121											
NLRP3	114548	broad.mit.edu	37	chr1	247597811	247597811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaaagaagatgtctgcCtttagggtgcctactgccta	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247597811	A	A	247597811	1	1	61	0	1	0	0	0	0	0	0	0	10573	696	24	2		2	NLRP3	1	247597811	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5128	247597811	1652810	877	69122											
OR2W5	441932	broad.mit.edu	37	chr1	247654702	247654702	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggggggtccagagaagacCatcacctaccacggctgtgt	13	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247654702	G	G	247654702	2	3	61	1	0	0	0	0	0	0	0	1	11128	581	21	4		4	OR2W5	1	247654702	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	56891	247654702	1595919	878	69123											
C1orf150	148823	broad.mit.edu	37	chr1	247719776	247719776	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaaagaaaacggtaagaaCagagcatctcagagtttttt	10	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247719776	G	G	247719776	1	3	61	0	1	0	0	0	0	0	0	0	2024	493	17	4		4	C1orf150	1	247719776	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	65074	247719776	1530845	879	69124											
C1orf150	148823	broad.mit.edu	37	chr1	247737828	247737828	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttattatatatccttagGcaactctgatatgtggcatc	6	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247737828	T	T	247737828	1	4	61	0	1	0	0	0	0	0	0	0	2024	1218	42	3		3	C1orf150	1	247737828	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18052	247737828	1512793	880	69125											
OR2G2	81470	broad.mit.edu	37	chr1	247752548	247752548	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctcttatttataccttgaGgatcaaggaggtgaaagggg	12	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247752548	C	C	247752548	3	2	61	1	0	0	0	0	1	0	0	0	11092	1000	35	4	889	4	OR2G2	1	247752548	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14720	247752548	1498073	881	69126											
OR2G3	81469	broad.mit.edu	37	chr1	247769059	247769059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatccccctcttcataccCcaatgtacttttttctcagc	4	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247769059	A	A	247769059	3	1	61	1	0	0	0	0	1	0	0	0	11093	623	22	2	174	2	OR2G3	1	247769059	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16511	247769059	1481562	882	69127											
OR2G3	81469	broad.mit.edu	37	chr1	247769078	247769078	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaatgtacttttttctcaGcaacctctctttactggaca	4	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247769078	C	C	247769078	3	2	61	1	0	0	0	0	1	0	0	0	11093	971	34	4	193	4	OR2G3	1	247769078	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19	247769078	1481543	883	69128											
OR2G3	81469	broad.mit.edu	37	chr1	247769303	247769303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtcatcatgaacccacGgctttgccaacagctggcat	9	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247769303	T	T	247769303	3	4	61	1	0	0	0	0	1	0	0	0	11093	1116	39	1	418	1	OR2G3	1	247769303	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	225	247769303	1481318	884	69129											
OR13G1	441933	broad.mit.edu	37	chr1	247835874	247835874	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaacctcatgataagagctGtgtgcacccaggaattggtg	11	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247835874	C	C	247835874	3	2	61	1	0	0	0	0	1	0	0	0	11036	1377	48	4	457	4	OR13G1	1	247835874	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66571	247835874	1414747	885	69130											
OR1C1	26188	broad.mit.edu	37	chr1	247920886	247920886	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccattgaatacatgatggTtgacagagtgtcgctctcag	10	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247920886	G	G	247920886	3	3	61	1	0	0	0	0	1	0	0	0	11046	1725	60	5	123	5	OR1C1	1	247920886	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	85012	247920886	1329735	886	69131											
TRIM58	25893	broad.mit.edu	37	chr1	248023967	248023967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaagagttggaggacGccttgactcaggaggccaac	15	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248023967	T	T	248023967	3	4	61	1	0	0	0	0	1	0	0	0	16656	1087	38	3	475	3	TRIM58	1	248023967	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	103081	248023967	1226654	887	69132											
TRIM58	25893	broad.mit.edu	37	chr1	248039156	248039156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtttcctaagtttctacCagtcctttctttcctttcac	5	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248039156	A	A	248039156	1	1	61	0	1	0	0	0	0	0	0	0	16656	609	21	2		2	TRIM58	1	248039156	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15189	248039156	1211465	888	69133											
OR2W3	343171	broad.mit.edu	37	chr1	248059009	248059009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtacctcctgaccctcgtaGgcaacaccaccatcatcctg	6	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059009	T	T	248059009	3	4	61	1	0	0	0	0	1	0	0	0	11127	1000	35	2	123	2	OR2W3	1	248059009	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19853	248059009	1191612	889	69134											
OR2L13	284521	broad.mit.edu	37	chr1	248099993	248099993	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctggtgggccatgtgcCagacatgtgggaggggaatg	19	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248099993	T	T	248099993	1	4	61	0	1	0	0	0	0	0	0	0	11100	609	21	4		4	OR2L13	1	248099993	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40984	248099993	1150628	890	69135											
OR2L8	391190	broad.mit.edu	37	chr1	248112717	248112717	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcccagcaatggtgactctGgcctgcatggacacctgggt	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248112717	C	C	248112717	2	2	61	1	0	0	0	0	0	0	0	1	11103	1335	47	4		4	OR2L8	1	248112717	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12724	248112717	1137904	891	69136											
OR2L13	284521	broad.mit.edu	37	chr1	248115452	248115452	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actcagagatgaaattattaGatatttcaatgacaacagaa	6	5	2	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248115452	C	C	248115452	1	2	61	0	1	0	0	0	0	0	0	0	11100	957	33	4		4	OR2L13	1	248115452	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2735	248115452	1135169	892	69137											
OR2L13	284521	broad.mit.edu	37	chr1	248153564	248153564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaaggatcatatgaatGctccatggaaaattacaatc	8	7	2	1	rs142469236	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248153564	T	T	248153564	1	4	61	0	1	0	0	0	0	0	0	0	11100	1334	46	3		3	OR2L13	1	248153564	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38112	248153564	1097057	893	69138											
OR2L13	284521	broad.mit.edu	37	chr1	248166527	248166527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcttcatcctcattgtttTcattttcctaatggctctaa	3	12	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248166527	C	C	248166527	1	2	61	0	1	0	0	0	0	0	0	0	11100	1798	62	5		5	OR2L13	1	248166527	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	12963	248166527	1084094	894	69139											
OR2L13	284521	broad.mit.edu	37	chr1	248186063	248186063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctctgacagaggacaagGttctggctgttttctacacc	10	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248186063	T	T	248186063	1	4	61	0	1	0	0	0	0	0	0	0	11100	1276	44	3		3	OR2L13	1	248186063	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19536	248186063	1064558	895	69140											
OR2L3	391192	broad.mit.edu	37	chr1	248224541	248224541	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcccagcaatggtgactctGgcctgcatggacacctgggt	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248224541	C	C	248224541	2	2	61	1	0	0	0	0	0	0	0	1	11102	1335	47	4		4	OR2L3	1	248224541	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38478	248224541	1026080	896	69141											
OR2L13	284521	broad.mit.edu	37	chr1	248263072	248263072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccactctctctattatcCtatccgcatgagtaaaatga	5	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248263072	A	A	248263072	3	1	61	1	0	0	0	0	1	0	0	0	11100	681	24	2	397	2	OR2L13	1	248263072	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38531	248263072	987549	897	69142											
OR2M2	391194	broad.mit.edu	37	chr1	248343189	248343189	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtattgatcacccaactAcagaatttaccaaaatcaca	4	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343189	T	T	248343189	1	4	61	0	1	0	0	0	0	0	0	0	11104	406	14	5		5	OR2M2	1	248343189	5'Flank	SNP	A	TCGA-17-Z031-01A-01W-0746-08	80117	248343189	907432	898	69143											
OR2M2	391194	broad.mit.edu	37	chr1	248343651	248343651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgttatggcttatgacCgctatattgctatttgccac	9	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343651	A	A	248343651	3	1	61	1	0	0	0	0	1	0	0	0	11104	652	23	1	366	1	OR2M2	1	248343651	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	462	248343651	906970	899	69144											
OR2M3	127062	broad.mit.edu	37	chr1	248366333	248366333	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttttaccaaattaatacGctggttttgtggtactaggt	9	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366333	T	T	248366333	1	4	61	0	1	0	0	0	0	0	0	0	11105	1102	38	3		3	OR2M3	1	248366333	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22682	248366333	884288	900	69145											
OR2M3	127062	broad.mit.edu	37	chr1	248366647	248366647	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctggcagcaagtccatttCtatggctggttgtgccacac	11	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248366647	G	G	248366647	3	3	61	1	0	0	0	0	1	0	0	0	11105	913	32	4	280	4	OR2M3	1	248366647	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	314	248366647	883974	901	69146											
OR2M3	127062	broad.mit.edu	37	chr1	248367108	248367108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttcctctcacctcttgGtggtgggaatgtactatgga	11	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248367108	T	T	248367108	3	4	61	1	0	0	0	0	1	0	0	0	11105	1261	44	3	741	3	OR2M3	1	248367108	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	461	248367108	883513	902	69147											
OR2M4	26245	broad.mit.edu	37	chr1	248402462	248402462	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatgctcatctgcaccactCtacccaagatgatcttcagc	5	15	6	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248402462	A	A	248402462	3	1	61	1	0	0	0	0	1	0	0	0	11106	912	32	3	234	3	OR2M4	1	248402462	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	35354	248402462	848159	903	69148											
OR2T6	254879	broad.mit.edu	37	chr1	248550835	248550835	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatgtttacacagacatGtttaagtgatttatcttttg	6	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248550835	T	T	248550835	1	4	61	0	1	0	0	0	0	0	0	0	11123	1392	48	3		3	OR2T6	1	248550835	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	148373	248550835	699786	904	69149											
OR2T1	26696	broad.mit.edu	37	chr1	248570337	248570337	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttagaaacaaggatgtgActggagctctgaagagggcc	14	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248570337	C	C	248570337	3	2	61	1	0	0	0	0	1	0	0	0	11110	275	10	5	1044	5	OR2T1	1	248570337	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19502	248570337	680284	905	69150											
OR2G6	391211	broad.mit.edu	37	chr1	248685107	248685107	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtatgttgtctggactccAgactccacactccaatgtac	7	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248685107	G	G	248685107	3	3	61	1	0	0	0	0	1	0	0	0	11094	180	7	5	162	5	OR2G6	1	248685107	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	114770	248685107	565514	906	69151											
OR2G6	391211	broad.mit.edu	37	chr1	248685463	248685463	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccctctgtggtcatcgCacactggatcatattttctg	8	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248685463	T	T	248685463	2	4	61	1	0	0	0	0	0	0	0	1	11094	697	25	4		4	OR2G6	1	248685463	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	356	248685463	565158	907	69152											
TMEM18	129787	broad.mit.edu	37	chr2	675556	675556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgtagcttcgggaggaCaagcaggtgaggagcacgca	16	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	675556	A	A	675556	3	1	61	1	0	0	0	0	1	0	0	0	16221	477	17	3	306	3	TMEM18	2	675556	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08		675556	242523817	908	69153											
SNTG2	54221	broad.mit.edu	37	chr2	1021417	1021417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcccctgtgatgacactgGgccctctgggtcatccggga	14	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1021417	A	A	1021417	1	1	61	0	1	0	0	0	0	0	0	0	14989	1247	43	4		4	SNTG2	2	1021417	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	345861	1021417	242177956	909	69154											
SNTG2	54221	broad.mit.edu	37	chr2	1263281	1263281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggcttgcagaatgagaGgattgtttgttctgcgtggt	15	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1263281	T	T	1263281	1	4	61	0	1	0	0	0	0	0	0	0	14989	1015	35	2		2	SNTG2	2	1263281	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	241864	1263281	241936092	910	69155											
MYT1L	23040	broad.mit.edu	37	chr2	1946754	1946754	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaatattttaaagattacCgttttcttcttcctcttcct	3	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1946754	A	A	1946754	4	1	61	1	0	0	0	0	0	1	0	0	10201	666	23	1	3117	1	MYT1L	2	1946754	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	683473	1946754	241252619	911	69156											
RPS7	6201	broad.mit.edu	37	chr2	3623151	3623151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcggcgcctgcagcccgGgccgcgtaacgctgaccgct	14	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3623151	T	T	3623151	1	4	61	0	1	0	0	0	0	0	0	0	13771	1247	43	2		2	RPS7	2	3623151	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1676397	3623151	239576222	912	69157											
COLEC11	78989	broad.mit.edu	37	chr2	3682638	3682638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcaggtgccctcctgGcccttgtcaccgtcccatga	8	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3682638	T	T	3682638	1	4	61	0	1	0	0	0	0	0	0	0	3743	1218	42	3		3	COLEC11	2	3682638	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59487	3682638	239516735	913	69158											
ASAP2	8853	broad.mit.edu	37	chr2	9437490	9437490	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtttggcggcaactgtgtAtgcagagatgacccagattt	12	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9437490	G	G	9437490	2	3	61	1	0	0	0	0	0	0	0	1	1015	436	16	5		5	ASAP2	2	9437490	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5754852	9437490	233761883	914	69159											
CPSF3	51692	broad.mit.edu	37	chr2	9606390	9606403	+	Intron	DEL	CACAAAGACGCACG	-	-													cacgcacgcgcacacacgcaCacaaagacgcacgcacacac					rs60696786	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9606403	-	-	9606390	6	5	61	0	1	1	0	1	0	0	0	0	3858	493	17	0		0	CPSF3	2	9606390	Intron	DEL	CACAAAGACGCACG	TCGA-17-Z031-01A-01W-0746-08	168900	9606390	233592983	915	69160											
TAF1B	9014	broad.mit.edu	37	chr2	10008339	10008339	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgataggagttgtttaAgttcacagaaattaactgtt	9	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10008339	T	T	10008339	1	4	61	0	1	0	0	0	0	0	0	0	15639	87	3	5		5	TAF1B	2	10008339	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	401949	10008339	233191034	916	69161											
GRHL1	29841	broad.mit.edu	37	chr2	10101601	10101601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttcctaagacgcctgcGtgtttgtataagtattgggt	10	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10101601	T	T	10101601	1	4	61	0	1	0	0	0	0	0	0	0	6829	1160	40	3		3	GRHL1	2	10101601	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	93262	10101601	233097772	917	69162											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10911864	10911864	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catccctggcacccacccttCcttgagaactgcccccagtg	7	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10911864	A	A	10911864	1	1	61	0	1	0	0	0	0	0	0	0	1185	870	30	3		3	ATP6V1C2	2	10911864	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	810263	10911864	232287509	918	69163											
GREB1	9687	broad.mit.edu	37	chr2	11736370	11736370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccggtgtgcacaagtgaGtggtgaaaaggaatctccca	12	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11736370	T	T	11736370	1	4	61	0	1	0	0	0	0	0	0	0	6826	1044	36	3		3	GREB1	2	11736370	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	824506	11736370	231463003	919	69164											
NTSR2	23620	broad.mit.edu	37	chr2	11798449	11798449	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctaggaggggtcacgtgGcttccctgcgcttgatggtt	16	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11798449	T	T	11798449	1	4	61	0	1	0	0	0	0	0	0	0	10806	1218	42	3		3	NTSR2	2	11798449	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62079	11798449	231400924	920	69165											
NTSR2	23620	broad.mit.edu	37	chr2	11800230	11800230	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgggcatggtacggcagccAgcagatgacatacatgacca	13	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11800230	T	T	11800230	3	4	61	1	0	0	0	0	1	0	0	0	10806	188	7	5	312	5	NTSR2	2	11800230	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1781	11800230	231399143	921	69166											
LPIN1	23175	broad.mit.edu	37	chr2	11849171	11849171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaagccagcattctaccCtagatcattctacacagttt	7	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11849171	A	A	11849171	1	1	61	0	1	0	0	0	0	0	0	0	9005	696	24	2		2	LPIN1	2	11849171	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	48941	11849171	231350202	922	69167											
LPIN1	23175	broad.mit.edu	37	chr2	11852531	11852531	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcctctgtgctctctctgGaccctgggcatatcttgatg	9	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11852531	T	T	11852531	1	4	61	0	1	0	0	0	0	0	0	0	9005	1189	41	3		3	LPIN1	2	11852531	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3360	11852531	231346842	923	69168											
LPIN1	23175	broad.mit.edu	37	chr2	11942818	11942818	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaataggcaagtgaatgagGagaggcagcccccacacgtg	13	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11942818	T	T	11942818	1	4	61	0	1	0	0	0	0	0	0	0	9005	1189	41	3		3	LPIN1	2	11942818	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	90287	11942818	231256555	924	69169											
LPIN1	23175	broad.mit.edu	37	chr2	11955540	11955540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctacacctgcattggctcCtcatggctttcaggccgagt	10	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11955540	A	A	11955540	1	1	61	0	1	0	0	0	0	0	0	0	9005	696	24	2		2	LPIN1	2	11955540	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12722	11955540	231243833	925	69170											
NBAS	51594	broad.mit.edu	37	chr2	15467740	15467740	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatggatgaatgaacgaaTgatgatgtcaagttatgcaa	10	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15467740	C	C	15467740	1	2	61	0	1	0	0	0	0	0	0	0	10280	1479	51	5		5	NBAS	2	15467740	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3512200	15467740	227731633	926	69171											
NBAS	51594	broad.mit.edu	37	chr2	15506640	15506640	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcacatattctgctattgtCctgcaatgatgtcaagaata	7	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15506640	A	A	15506640	1	1	61	0	1	0	0	0	0	0	0	0	10280	870	30	3		3	NBAS	2	15506640	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38900	15506640	227692733	927	69172											
KCNS3	3790	broad.mit.edu	37	chr2	18112326	18112326	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacaagacgaggaacttgtCaacctgaatgtggggggctt	15	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18112326	A	A	18112326	2	1	61	1	0	0	0	0	0	0	0	1	8160	813	29	3		3	KCNS3	2	18112326	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2605686	18112326	225087047	928	69173											
NT5C1B	93034	broad.mit.edu	37	chr2	18765636	18765636	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccctgcttggagaagcggGatgctggagacagctgaggc	17	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18765636	T	T	18765636	1	4	61	0	1	0	0	0	0	0	0	0	10781	1189	41	3		3	NT5C1B	2	18765636	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	653310	18765636	224433737	929	69174											
WDR35	57539	broad.mit.edu	37	chr2	20113304	20113304	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatattttacagttatataCagtttatcattcctttatcc	2	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20113304	G	G	20113304	1	3	61	0	1	0	0	0	0	0	0	0	17416	493	17	4		4	WDR35	2	20113304	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1347668	20113304	223086069	930	69175											
WDR35	57539	broad.mit.edu	37	chr2	20130107	20130107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagctagcccttcataCtcaatttataattttcagac	5	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20130107	A	A	20130107	1	1	61	0	1	0	0	0	0	0	0	0	17416	580	20	3		3	WDR35	2	20130107	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16803	20130107	223069266	931	69176											
WDR35	57539	broad.mit.edu	37	chr2	20173448	20173448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcctactacgtacatgCcagtgtcaatcaaaacggga	10	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20173448	A	A	20173448	3	1	61	1	0	0	0	0	1	0	0	0	17416	739	26	3	2871	3	WDR35	2	20173448	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	43341	20173448	223025925	932	69177											
PUM2	23369	broad.mit.edu	37	chr2	20458167	20458167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacattaataacaagtgaCcttaatattgctttgttgaa	5	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20458167	A	A	20458167	1	1	61	0	1	0	0	0	0	0	0	0	12934	522	18	3		3	PUM2	2	20458167	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	284719	20458167	222741206	933	69178											
PUM2	23369	broad.mit.edu	37	chr2	20512215	20512215	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaacacaattatatacTtatacttttaagttaaacaa	2	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20512215	G	G	20512215	1	3	61	0	1	0	0	0	0	0	0	0	12934	1624	56	5		5	PUM2	2	20512215	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	54048	20512215	222687158	934	69179											
APOB	338	broad.mit.edu	37	chr2	21226177	21226177	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggaccctcaactcagttttGaatatggtgagttttttatc	8	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21226177	T	T	21226177	3	4	61	1	0	0	0	0	1	0	0	0	787	1281	45	3	1578	3	APOB	2	21226177	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	713962	21226177	221973196	935	69180											
TP53I3	9540	broad.mit.edu	37	chr2	24307210	24307234	+	Intron	DEL	ACAGGGCAGGGCAGGGCAGGACAGG	-	-													ctaacatattgtctgaggacAcagggcagggcagggcagga					rs72049316	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24307234	-	-	24307210	6	5	61	0	1	1	0	1	0	0	0	0	16511	174	6	0		0	TP53I3	2	24307210	Intron	DEL	ACAGGGCAGGGCAGGGCAGGACAGG	TCGA-17-Z031-01A-01W-0746-08	3081033	24307210	218892163	936	69181											
ADCY3	109	broad.mit.edu	37	chr2	25045374	25045374	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctctggctactggggttAgctaccttgttggagctggc	13	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25045374	C	C	25045374	1	2	61	0	1	0	0	0	0	0	0	0	295	435	15	5		5	ADCY3	2	25045374	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	738164	25045374	218153999	937	69182											
DNAJC27	51277	broad.mit.edu	37	chr2	25174051	25174051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatgaagtatttatgcaCgtacacgacacagttttctc	6	9	2	1	rs149300945	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25174051	A	A	25174051	1	1	61	0	1	0	0	0	0	0	0	0	4685	551	19	3		3	DNAJC27	2	25174051	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	128677	25174051	218025322	938	69183											
KIF3C	3797	broad.mit.edu	37	chr2	26179321	26179321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctctccatggcctggggaCacagaggggttgggaggtgg	19	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26179321	A	A	26179321	1	1	61	0	1	0	0	0	0	0	0	0	8372	493	17	3		3	KIF3C	2	26179321	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1005270	26179321	217020052	939	69184											
C2orf70	339778	broad.mit.edu	37	chr2	26800283	26800283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggcattaggggaggtgGcccccaaccctgcccaggtg	17	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26800283	T	T	26800283	1	4	61	0	1	0	0	0	0	0	0	0	2212	1218	42	3		3	C2orf70	2	26800283	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	620962	26800283	216399090	940	69185											
C2orf18	54978	broad.mit.edu	37	chr2	27001345	27001345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagcaggagagactgctggGtggcacccgcactcccatca	13	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27001345	T	T	27001345	3	4	61	1	0	0	0	0	1	0	0	0	2180	1261	44	3	1104	3	C2orf18	2	27001345	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	201062	27001345	216198028	941	69186											
DPYSL5	56896	broad.mit.edu	37	chr2	27165429	27165429	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaccatctcagccagcacGcaggtccagggaggagactt	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27165429	T	T	27165429	2	4	61	1	0	0	0	0	0	0	0	1	4790	1074	38	3		3	DPYSL5	2	27165429	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	164084	27165429	216033944	942	69187											
SLC5A6	8884	broad.mit.edu	37	chr2	27429627	27429627	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcacagatgctaacctcTagcaggaatttcaatcctgc	6	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27429627	C	C	27429627	1	2	61	0	1	0	0	0	0	0	0	0	14783	1537	53	5		5	SLC5A6	2	27429627	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	264198	27429627	215769746	943	69188											
CAD	790	broad.mit.edu	37	chr2	27446888	27446888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagctgggaaccctgggGgccagacaggtaagatcctg	14	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27446888	T	T	27446888	3	4	61	1	0	0	0	0	1	0	0	0	2591	1232	43	2	1129	2	CAD	2	27446888	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17261	27446888	215752485	944	69189											
CAD	790	broad.mit.edu	37	chr2	27465161	27465161	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagacaggattttcccctTttttccagctggccgccaag	8	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27465161	A	A	27465161	1	1	61	0	1	0	0	0	0	0	0	0	2591	1856	64	5		5	CAD	2	27465161	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18273	27465161	215734212	945	69190											
SLC30A3	7781	broad.mit.edu	37	chr2	27480055	27480055	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatggaggcagccagtacCccaaagctctgcaggaggtc	14	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27480055	A	A	27480055	2	1	61	1	0	0	0	0	0	0	0	1	14670	610	22	2		2	SLC30A3	2	27480055	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14894	27480055	215719318	946	69191											
SLC30A3	7781	broad.mit.edu	37	chr2	27488685	27488685	+	5'Flank	DEL	C	-	-													aaggcaggaattgtttctttCtcatctgtgtccccaaaccc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27488685	-	-	27488685	6	5	61	0	1	1	0	1	0	0	0	0	14670	928	32	0		0	SLC30A3	2	27488685	5'Flank	DEL	C	TCGA-17-Z031-01A-01W-0746-08	8630	27488685	215710688	947	69192											
SNX17	9784	broad.mit.edu	37	chr2	27595405	27595405	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagggaagggaggggcacCcaagagaacattatgagcat	15	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27595405	G	G	27595405	1	3	61	0	1	0	0	0	0	0	0	0	15002	638	22	4		4	SNX17	2	27595405	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	106720	27595405	215603968	948	69193											
PPM1G	5496	broad.mit.edu	37	chr2	27604918	27604918	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gataatgctcccagattgccGacttagctcagattaaaaga	8	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27604918	A	A	27604918	1	1	61	0	1	0	0	0	0	0	0	0	12441	1073	37	4		4	PPM1G	2	27604918	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9513	27604918	215594455	949	69194											
NRBP1	29959	broad.mit.edu	37	chr2	27656155	27656155	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccagcatgtcggagggggaGtcccagacagtacttagcag	14	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27656155	C	C	27656155	3	2	61	1	0	0	0	0	1	0	0	0	10737	1020	36	4	17	4	NRBP1	2	27656155	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	51237	27656155	215543218	950	69195											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27889956	27889956	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgttggccaagctggtcTtgaactcctgaccttgtgat	10	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27889956	G	G	27889956	1	3	61	0	1	0	0	0	0	0	0	0	14767	1624	56	5		5	SLC4A1AP	2	27889956	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	233801	27889956	215309417	951	69196											
BRE	9577	broad.mit.edu	37	chr2	28352283	28352283	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaggtagcctggtgctacTtcttgctaaccaatatgtct	9	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28352283	C	C	28352283	1	2	61	0	1	0	0	0	0	0	0	0	1518	1624	56	5		5	BRE	2	28352283	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	462327	28352283	214847090	952	69197											
BRE	9577	broad.mit.edu	37	chr2	28467721	28467721	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggaaagatttttgttttcTtgtacacagtgagtatactt	9	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28467721	G	G	28467721	3	3	61	1	0	0	0	0	1	0	0	0	1518	1609	56	5	960	5	BRE	2	28467721	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	115438	28467721	214731652	953	69198											
WDR43	23160	broad.mit.edu	37	chr2	29164533	29164533	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgagacagggtcttgctctGtcgctcaggctgcactgcgg	14	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29164533	C	C	29164533	1	2	61	0	1	0	0	0	0	0	0	0	17422	1392	48	4		4	WDR43	2	29164533	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	696812	29164533	214034840	954	69199											
FAM179A	165186	broad.mit.edu	37	chr2	29240240	29240240	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actctctcatagcctgctgaTgggcccattttcttttttaa	6	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29240240	C	C	29240240	1	2	61	0	1	0	0	0	0	0	0	0	5550	1479	51	5		5	FAM179A	2	29240240	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	75707	29240240	213959133	955	69200											
ALK	238	broad.mit.edu	37	chr2	29445299	29445299	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagagaaggggagggtgggGaggaggaggaggctgtgagc	25	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29445299	T	T	29445299	1	4	61	0	1	0	0	0	0	0	0	0	525	1189	41	3		3	ALK	2	29445299	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	205059	29445299	213754074	956	69201											
ALK	238	broad.mit.edu	37	chr2	29455249	29455249	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggaacgtgtctgtcttGgccccgtaggccctgccacc	14	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29455249	T	T	29455249	2	4	61	1	0	0	0	0	0	0	0	1	525	1335	47	2		2	ALK	2	29455249	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9950	29455249	213744124	957	69202											
ALK	238	broad.mit.edu	37	chr2	29551311	29551311	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcccattccaacaagtgaagGagctctgcagggccatcttg	10	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29551311	C	C	29551311	3	2	61	1	0	0	0	0	1	0	0	0	525	1174	41	4	3639	4	ALK	2	29551311	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	96062	29551311	213648062	958	69203											
ALK	238	broad.mit.edu	37	chr2	29867888	29867888	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacagtcttggaggccttgGagatgtcccaaagccaagac	11	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29867888	T	T	29867888	1	4	61	0	1	0	0	0	0	0	0	0	525	1189	41	3		3	ALK	2	29867888	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	316577	29867888	213331485	959	69204											
ALK	238	broad.mit.edu	37	chr2	30072494	30072494	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaacatttaccaagtgtcCacaccaagccatctttaaaa	4	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30072494	G	G	30072494	1	3	61	0	1	0	0	0	0	0	0	0	525	609	21	4		4	ALK	2	30072494	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	204606	30072494	213126879	960	69205											
CAPN13	92291	broad.mit.edu	37	chr2	30955290	30955290	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggtctctgggatgccccTtggggacacttacttgccat	11	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30955290	C	C	30955290	1	2	61	0	1	0	0	0	0	0	0	0	2652	1624	56	5		5	CAPN13	2	30955290	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	882796	30955290	212244083	961	69206											
CAPN13	92291	broad.mit.edu	37	chr2	30980755	30980755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttggcggatggcatcacaGgagcgtgagatggaccgata	16	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30980755	T	T	30980755	1	4	61	0	1	0	0	0	0	0	0	0	2652	1015	35	2		2	CAPN13	2	30980755	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25465	30980755	212218618	962	69207											
XDH	7498	broad.mit.edu	37	chr2	31558753	31558754	+	3'UTR	DNP	CT	TG	TG													gactttaatagatccatgttCtgtggtatgttcctcctgct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	31558754	TG	TG	31558753	1	4	61	0	1	0	0	0	0	0	0	0	17553	928	32	4		4	XDH	2	31558753	3'UTR	DNP	CT	TCGA-17-Z031-01A-01W-0746-08	577998	31558753	211640620	963	69208											
XDH	7498	broad.mit.edu	37	chr2	31587189	31587190	+	Intron	DNP	CC	AA	AA													tctccctctgatcctccctcCcacttatgtcacctggagga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31587190	AA	AA	31587189	1	1	61	0	1	0	0	0	0	0	0	0	17553	638	22	2		2	XDH	2	31587189	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	28436	31587189	211612184	964	69209											
SLC30A6	55676	broad.mit.edu	37	chr2	32426971	32426971	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcccaagaccaaaaaaaTtaaaatgaaagagaagctaa	6	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32426971	G	G	32426971	1	3	61	0	1	0	0	0	0	0	0	0	14673	1508	52	5		5	SLC30A6	2	32426971	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	839782	32426971	210772402	965	69210											
BIRC6	57448	broad.mit.edu	37	chr2	32724733	32724733	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgccgtgatagaatcggTtacatttttagtgcaccact	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32724733	C	C	32724733	3	2	61	1	0	0	0	0	1	0	0	0	1444	1725	60	5	8770	5	BIRC6	2	32724733	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	297762	32724733	210474640	966	69211											
BIRC6	57448	broad.mit.edu	37	chr2	32836451	32836451	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttacttctttgtaatgtcAtttactgtgtcttttaaatt	4	5	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32836451	G	G	32836451	1	3	61	0	1	0	0	0	0	0	0	0	1444	232	8	5		5	BIRC6	2	32836451	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	111718	32836451	210362922	967	69212											
LTBP1	4052	broad.mit.edu	37	chr2	33281295	33281295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtttgtgggtcgaattGgtcccaatagcttaggatgc	14	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33281295	T	T	33281295	1	4	61	0	1	0	0	0	0	0	0	0	9160	1363	47	2		2	LTBP1	2	33281295	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	444844	33281295	209918078	968	69213											
LTBP1	4052	broad.mit.edu	37	chr2	33328694	33328695	+	Intron	DEL	GA	-	-													gtgtgtgtgtgtgtgtgtgtGagtgttatgctgccatgtgg					rs71871697		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33328695	-	-	33328694	6	5	61	0	1	1	0	1	0	0	0	0	9160	1305	45	0		0	LTBP1	2	33328694	Intron	DEL	GA	TCGA-17-Z031-01A-01W-0746-08	47399	33328694	209870679	969	69214											
LTBP1	4052	broad.mit.edu	37	chr2	33477981	33477981	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacgggacaactttggcacCttgggtcatttgtggtttct	11	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33477981	G	G	33477981	1	3	61	0	1	0	0	0	0	0	0	0	9160	696	24	4		4	LTBP1	2	33477981	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	149287	33477981	209721392	970	69215											
LTBP1	4052	broad.mit.edu	37	chr2	33572319	33572319	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagaaggggtttgactgctCtctggggatcgccttctttt	13	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33572319	A	A	33572319	1	1	61	0	1	0	0	0	0	0	0	0	9160	928	32	3		3	LTBP1	2	33572319	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	94338	33572319	209627054	971	69216											
LTBP1	4052	broad.mit.edu	37	chr2	33590305	33590306	+	Intron	DEL	AG	-	-													tggaagtcactcttagaaatAgagatggaaactttgagact							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33590306	-	-	33590305	6	5	61	0	1	1	0	1	0	0	0	0	9160	435	15	0		0	LTBP1	2	33590305	Intron	DEL	AG	TCGA-17-Z031-01A-01W-0746-08	17986	33590305	209609068	972	69217											
FAM98A	25940	broad.mit.edu	37	chr2	33810805	33810805	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagagaaatgtcaattttcAaaatgacataagaaacacat	5	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33810805	G	G	33810805	1	3	61	0	1	0	0	0	0	0	0	0	5713	145	5	5		5	FAM98A	2	33810805	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	220500	33810805	209388568	973	69218											
VIT	5212	broad.mit.edu	37	chr2	36956680	36956680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcataatgcttgtttctccCacatggagggttattatact	9	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36956680	A	A	36956680	1	1	61	0	1	0	0	0	0	0	0	0	17298	609	21	2		2	VIT	2	36956680	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3145875	36956680	206242693	974	69219											
VIT	5212	broad.mit.edu	37	chr2	36970442	36970442	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataactaactagaaatcaggGtgttggcagggagcccccat	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36970442	C	C	36970442	1	2	61	0	1	0	0	0	0	0	0	0	17298	1276	44	4		4	VIT	2	36970442	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13762	36970442	206228931	975	69220											
STRN	6801	broad.mit.edu	37	chr2	37129805	37129805	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtcatcttccctgtccGtgacatcacttgaaaagccc	6	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37129805	A	A	37129805	3	1	61	1	0	0	0	0	1	0	0	0	15447	1145	40	4	1817	4	STRN	2	37129805	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	159363	37129805	206069568	976	69221											
HEATR5B	54497	broad.mit.edu	37	chr2	37280662	37280662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctttagtgcactaagaaCagcagtaaatatgttaagct	7	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37280662	A	A	37280662	3	1	61	1	0	0	0	0	1	0	0	0	7099	478	17	3	3807	3	HEATR5B	2	37280662	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	150857	37280662	205918711	977	69222											
C2orf56	55471	broad.mit.edu	37	chr2	37458822	37458822	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagccccagctcctggcGgagcgagctagcctgcgaat	12	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37458822	T	T	37458822	1	4	61	0	1	0	0	0	0	0	0	0	2199	1131	39	1		1	C2orf56	2	37458822	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	178160	37458822	205740551	978	69223											
TMEM178	130733	broad.mit.edu	37	chr2	39944434	39944434	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcgagcgactcctgagGggaacagcgcggagttcagg	17	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39944434	A	A	39944434	1	1	61	0	1	0	0	0	0	0	0	0	16218	1247	43	4		4	TMEM178	2	39944434	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2485612	39944434	203254939	979	69224											
SLC8A1	6546	broad.mit.edu	37	chr2	40657293	40657293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacattcaccagtttcatttCcttctccttccatttctgtc	2	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40657293	A	A	40657293	3	1	61	1	0	0	0	0	1	0	0	0	14820	855	30	3	2941	3	SLC8A1	2	40657293	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	712859	40657293	202542080	980	69225											
EML4	27436	broad.mit.edu	37	chr2	42483790	42483790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacccatttatgaaagggGgaaaaactaacattgcagaa	10	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42483790	T	T	42483790	1	4	61	0	1	0	0	0	0	0	0	0	5141	1247	43	2		2	EML4	2	42483790	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1826497	42483790	200715583	981	69226											
COX7A2L	9167	broad.mit.edu	37	chr2	42579417	42579417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcctgggctaaagtgatcCtcccgcctcggcctctggag	11	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42579417	A	A	42579417	1	1	61	0	1	0	0	0	0	0	0	0	3813	696	24	2		2	COX7A2L	2	42579417	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	95627	42579417	200619956	982	69227											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44010776	44010776	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctaaaagacataaggaaGgggaacgattttgagaccca	11	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44010776	T	T	44010776	1	4	61	0	1	0	0	0	0	0	0	0	4887	1015	35	2		2	DYNC2LI1	2	44010776	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1431359	44010776	199188597	983	69228											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44028653	44028653	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatagtcactcattcattcgGggcaatgctctcattagtgg	10	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44028653	T	T	44028653	1	4	61	0	1	0	0	0	0	0	0	0	4887	1247	43	2		2	DYNC2LI1	2	44028653	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17877	44028653	199170720	984	69229											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44028817	44028817	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaataaaccgctgtttatCacagcaggattggattcttt	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44028817	A	A	44028817	2	1	61	1	0	0	0	0	0	0	0	1	4887	816	29	3		3	DYNC2LI1	2	44028817	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	164	44028817	199170556	985	69230											
PRKCE	5581	broad.mit.edu	37	chr2	46315319	46315319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataccagagcatgagttgGgggtcactttaggctgtgtc	13	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46315319	T	T	46315319	1	4	61	0	1	0	0	0	0	0	0	0	12617	1247	43	2		2	PRKCE	2	46315319	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2286502	46315319	196884054	986	69231											
EPAS1	2034	broad.mit.edu	37	chr2	46596975	46596975	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaactcagaatcacagaActgattggttaccaccctga	6	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46596975	T	T	46596975	3	4	61	1	0	0	0	0	1	0	0	0	5192	40	2	5	815	5	EPAS1	2	46596975	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	281656	46596975	196602398	987	69232											
EPAS1	2034	broad.mit.edu	37	chr2	46607812	46607812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgggagcagcgccgttGgggccccctgtctctccacc	12	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46607812	T	T	46607812	3	4	61	1	0	0	0	0	1	0	0	0	5192	1339	47	2	2047	2	EPAS1	2	46607812	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10837	46607812	196591561	988	69233											
EPAS1	2034	broad.mit.edu	37	chr2	46609131	46609131	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggggacccacctggtggCagcacctcacatttgatgtg	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46609131	T	T	46609131	2	4	61	1	0	0	0	0	0	0	0	1	5192	697	25	4		4	EPAS1	2	46609131	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1319	46609131	196590242	989	69234											
C2orf61	285051	broad.mit.edu	37	chr2	47382496	47382496	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggaccgctccgggggaccCgccaggtttgtctttagtgc	15	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47382496	G	G	47382496	1	3	61	0	1	0	0	0	0	0	0	0	2202	667	23	4		4	C2orf61	2	47382496	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	773365	47382496	195816877	990	69235											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48808697	48808697	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctggaggaattttgcagAtgtattatgaacagggatta	12	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48808697	C	C	48808697	3	2	61	1	0	0	0	0	1	0	0	0	15435	333	12	5	927	5	STON1-GTF2A1L	2	48808697	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1426201	48808697	194390676	991	69236											
LHCGR	3973	broad.mit.edu	37	chr2	48941121	48941121	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggggaaataagcaaatacTtacagtgaagtcagtgtcgt	11	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48941121	A	A	48941121	1	1	61	0	1	0	0	0	0	0	0	0	8834	1624	56	5		5	LHCGR	2	48941121	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	132424	48941121	194258252	992	69237											
FSHR	2492	broad.mit.edu	37	chr2	49191198	49191198	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggtagaaatgatgagtttCttcctgagattttttttttt	9	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49191198	A	A	49191198	1	1	61	0	1	0	0	0	0	0	0	0	6133	928	32	3		3	FSHR	2	49191198	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	250077	49191198	194008175	993	69238											
FSHR	2492	broad.mit.edu	37	chr2	49230941	49230941	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaccccttggagtagtgcAgaatctgtcacttgagtgac	10	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49230941	C	C	49230941	1	2	61	0	1	0	0	0	0	0	0	0	6133	203	7	5		5	FSHR	2	49230941	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	39743	49230941	193968432	994	69239											
FSHR	2492	broad.mit.edu	37	chr2	49381388	49381388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccatgcagttgttccccCtccctctgatactcacagtt	6	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49381388	A	A	49381388	1	1	61	0	1	0	0	0	0	0	0	0	6133	696	24	2		2	FSHR	2	49381388	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	150447	49381388	193817985	995	69240											
FSHR	2492	broad.mit.edu	37	chr2	49381662	49381662	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagaagagatctgacttgaGaactggtagggtcatgtgac	14	5	2	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49381662	T	T	49381662	1	4	61	0	1	0	0	0	0	0	0	0	6133	957	33	3		3	FSHR	2	49381662	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	274	49381662	193817711	996	69241											
NRXN1	9378	broad.mit.edu	37	chr2	50149075	50149075	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacaagtgtccatttaagatCttgggatcagacataatact	7	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50149075	A	A	50149075	1	1	61	0	1	0	0	0	0	0	0	0	10760	928	32	3		3	NRXN1	2	50149075	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	767413	50149075	193050298	997	69242											
NRXN1	9378	broad.mit.edu	37	chr2	50208540	50208540	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaatgaaggggagggaGggaagagggaaaagaactaa	19	1	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50208540	A	A	50208540	1	1	61	0	1	0	0	0	0	0	0	0	10760	1015	35	4		4	NRXN1	2	50208540	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59465	50208540	192990833	998	69243											
NRXN1	9378	broad.mit.edu	37	chr2	50282164	50282164	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgtctagcaatcgccaggCgctcgttatcattgtttcct	9	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50282164	G	G	50282164	1	3	61	0	1	0	0	0	0	0	0	0	10760	768	27	4		4	NRXN1	2	50282164	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	73624	50282164	192917209	999	69244											
NRXN1	9378	broad.mit.edu	37	chr2	50551426	50551426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaggcaaccgattaaatGcatggcaagagagagaaaaa	11	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50551426	T	T	50551426	1	4	61	0	1	0	0	0	0	0	0	0	10760	1334	46	3		3	NRXN1	2	50551426	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	269262	50551426	192647947	1000	69245											
NRXN1	9378	broad.mit.edu	37	chr2	50573858	50573858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcaaggatgccggtgacCtgtagattgcaataggcact	12	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50573858	A	A	50573858	3	1	61	1	0	0	0	0	1	0	0	0	10760	681	24	2	1216	2	NRXN1	2	50573858	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22432	50573858	192625515	1001	69246											
NRXN1	9378	broad.mit.edu	37	chr2	50723336	50723336	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcaggtggttccatcCttactagaagtcatgacaat	7	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50723336	T	T	50723336	1	4	61	0	1	0	0	0	0	0	0	0	10760	696	24	4		4	NRXN1	2	50723336	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	149478	50723336	192476037	1002	69247											
NRXN1	9378	broad.mit.edu	37	chr2	50758552	50758552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaacatgctcccatcataGctcaaaaccgttgcctctag	5	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50758552	T	T	50758552	3	4	61	1	0	0	0	0	1	0	0	0	10760	962	34	3	2678	3	NRXN1	2	50758552	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	35216	50758552	192440821	1003	69248											
NRXN1	9378	broad.mit.edu	37	chr2	50847201	50847201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttactgactggtgaccCtggaaggtcggctgtgctgg	16	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50847201	A	A	50847201	3	1	61	1	0	0	0	0	1	0	0	0	10760	681	24	2	3571	2	NRXN1	2	50847201	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	88649	50847201	192352172	1004	69249											
NRXN1	9378	broad.mit.edu	37	chr2	50850783	50850783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagatgatacatacataaGtaaacaaatacactatgcaa	4	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50850783	T	T	50850783	1	4	61	0	1	0	0	0	0	0	0	0	10760	1044	36	3		3	NRXN1	2	50850783	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3582	50850783	192348590	1005	69250											
NRXN1	9378	broad.mit.edu	37	chr2	50988008	50988008	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatctaccttgcttatagccAgcaccacaatctattcacat	3	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50988008	T	T	50988008	1	4	61	0	1	0	0	0	0	0	0	0	10760	203	7	5		5	NRXN1	2	50988008	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	137225	50988008	192211365	1006	69251											
NRXN1	9378	broad.mit.edu	37	chr2	51206507	51206507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccttgtttaacaaatacCttggaaacttgccagttttc	5	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51206507	A	A	51206507	1	1	61	0	1	0	0	0	0	0	0	0	10760	696	24	2		2	NRXN1	2	51206507	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	218499	51206507	191992866	1007	69252											
NRXN1	9378	broad.mit.edu	37	chr2	51255088	51255088	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccaggcgccgtcgttaacCggcgtgtcggccaggagcgt	16	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51255088	G	G	51255088	2	3	61	1	0	0	0	0	0	0	0	1	10760	639	23	4		4	NRXN1	2	51255088	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	48581	51255088	191944285	1008	69253											
GPR75	10936	broad.mit.edu	37	chr2	54081076	54081076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgttgtaattctggttcCtatacagagccggcatggca	11	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54081076	A	A	54081076	3	1	61	1	0	0	0	0	1	0	0	0	6773	681	24	2	808	2	GPR75	2	54081076	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2825988	54081076	189118297	1009	69254											
PSME4	23198	broad.mit.edu	37	chr2	54148067	54148067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggcttgtcaaagccacCtggcacactgcagtattctg	11	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54148067	A	A	54148067	3	1	61	1	0	0	0	0	1	0	0	0	12815	681	24	2	3426	2	PSME4	2	54148067	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66991	54148067	189051306	1010	69255											
PSME4	23198	broad.mit.edu	37	chr2	54150541	54150541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtagaaaaattaaaaaCcttctgaagggccacctgtt	8	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54150541	A	A	54150541	3	1	61	1	0	0	0	0	1	0	0	0	12815	507	18	3	3834	3	PSME4	2	54150541	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2474	54150541	189048832	1011	69256											
SPTBN1	6711	broad.mit.edu	37	chr2	54855368	54855368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgcctccgcccagaaGttcgcaacagacggggaagg	13	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54855368	T	T	54855368	3	4	61	1	0	0	0	0	1	0	0	0	15237	1020	36	3	1938	3	SPTBN1	2	54855368	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	704827	54855368	188344005	1012	69257											
CCDC88A	55704	broad.mit.edu	37	chr2	55563918	55563918	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacaattctgaagactttGcttttcttgaacaatctcat	5	9	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563918	A	A	55563918	4	1	61	1	0	0	0	0	0	1	0	0	2891	1328	46	4	4136	4	CCDC88A	2	55563918	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	708550	55563918	187635455	1013	69258											
PAPOLG	64895	broad.mit.edu	37	chr2	60995506	60995506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcctcctatagtgctgGgattacaagtgtgagccacc	11	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60995506	T	T	60995506	1	4	61	0	1	0	0	0	0	0	0	0	11525	1247	43	2		2	PAPOLG	2	60995506	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5431588	60995506	182203867	1014	69259											
REL	5966	broad.mit.edu	37	chr2	61149451	61149451	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccagtatgtcagcaggCgccaattccaatactactgt	7	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61149451	A	A	61149451	2	1	61	1	0	0	0	0	0	0	0	1	13323	755	27	3		3	REL	2	61149451	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	153945	61149451	182049922	1015	69260											
USP34	9736	broad.mit.edu	37	chr2	61541957	61541958	+	Intron	INS	-	A	A													aagaaaaattttagtttcacINSaaaacaccctcacatagaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61541958	A	A	61541957	6	5	61	0	1	1	1	0	0	0	0	0	17192	493	17	0		0	USP34	2	61541957	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	392506	61541957	181657416	1016	69261											
EHBP1	23301	broad.mit.edu	37	chr2	62934444	62934444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaatggtaagatgtacctGgaggtagattttgctgtgct	13	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62934444	A	A	62934444	1	1	61	0	1	0	0	0	0	0	0	0	5015	1363	47	4		4	EHBP1	2	62934444	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1392487	62934444	180264929	1017	69262											
MDH1	4190	broad.mit.edu	37	chr2	63821381	63821381	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggtaaaatatcccaaaaAaggtggataagattatgtaa	9	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63821381	T	T	63821381	1	4	61	0	1	0	0	0	0	0	0	0	9501	29	1	5		5	MDH1	2	63821381	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	886937	63821381	179377992	1018	69263											
WDR92	116143	broad.mit.edu	37	chr2	68371621	68371621	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagatttagggagtcaaggTgactgaaggggattttttac	13	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68371621	A	A	68371621	1	1	61	0	1	0	0	0	0	0	0	0	17466	1711	59	5		5	WDR92	2	68371621	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4550240	68371621	174827752	1019	69264											
PLEK	5341	broad.mit.edu	37	chr2	68615475	68615475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggcacaagttgcaatgtGcctaagactggtgatgttag	13	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68615475	T	T	68615475	1	4	61	0	1	0	0	0	0	0	0	0	12148	1334	46	3		3	PLEK	2	68615475	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	243854	68615475	174583898	1020	69265											
BMP10	27302	broad.mit.edu	37	chr2	69092671	69092671	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaaggcagcaagcctcTattactgtacacccttatta	6	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69092671	G	G	69092671	1	3	61	0	1	0	0	0	0	0	0	0	1463	1537	53	5		5	BMP10	2	69092671	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	477196	69092671	174106702	1021	69266											
CLEC4F	165530	broad.mit.edu	37	chr2	71037053	71037053	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagttttccaggccacctGgagaacctgcttatagatat	9	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71037053	C	C	71037053	1	2	61	0	1	0	0	0	0	0	0	0	3548	1363	47	4		4	CLEC4F	2	71037053	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1944382	71037053	172162320	1022	69267											
ATP6V1B1	525	broad.mit.edu	37	chr2	71190182	71190182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtctcagcctggccattcCtcccctgccccccactccat	6	21	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71190182	A	A	71190182	1	1	61	0	1	0	0	0	0	0	0	0	1182	696	24	2		2	ATP6V1B1	2	71190182	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	153129	71190182	172009191	1023	69268											
PAIP2B	400961	broad.mit.edu	37	chr2	71417203	71417203	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcacagcaagacttaccCcttccagtttttcctccacc	4	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71417203	G	G	71417203	1	3	61	0	1	0	0	0	0	0	0	0	11492	638	22	4		4	PAIP2B	2	71417203	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	227021	71417203	171782170	1024	69269											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73316238	73316238	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctctatggcgctgcttgGgaggatggcagaggcagatt	15	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73316238	A	A	73316238	3	1	61	1	0	0	0	0	1	0	0	0	13005	1232	43	4	1340	4	RAB11FIP5	2	73316238	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1899035	73316238	169883135	1025	69270											
SMYD5	10322	broad.mit.edu	37	chr2	73447718	73447718	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagctcaggggctatttgtgGaaggaatgcagttagaggag	16	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73447718	T	T	73447718	1	4	61	0	1	0	0	0	0	0	0	0	14939	1189	41	3		3	SMYD5	2	73447718	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	131480	73447718	169751655	1026	69271											
ALMS1	7840	broad.mit.edu	37	chr2	73678173	73678173	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagtttcagttgctcctGgaccagttggccagacaact	10	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73678173	T	T	73678173	4	4	61	1	0	0	0	0	0	1	0	0	535	1349	47	2	4546	2	ALMS1	2	73678173	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	230455	73678173	169521200	1027	69272											
ALMS1	7840	broad.mit.edu	37	chr2	73717143	73717143	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcagaattagtagaacCtgcttttgtgccacctaaag	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73717143	T	T	73717143	3	4	61	1	0	0	0	0	1	0	0	0	535	681	24	4	8092	4	ALMS1	2	73717143	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38970	73717143	169482230	1028	69273											
DUSP11	8446	broad.mit.edu	37	chr2	73993913	73993913	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaattacataaacagagatCtccctgacccacaaatctca	3	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73993913	A	A	73993913	1	1	61	0	1	0	0	0	0	0	0	0	4851	928	32	3		3	DUSP11	2	73993913	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	276770	73993913	169205460	1029	69274											
DUSP11	8446	broad.mit.edu	37	chr2	74001052	74001052	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacagtttctggcaaatccTataaagcaaaaccataaaag	6	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74001052	A	A	74001052	5	1	61	1	0	0	0	0	0	0	1	0	4851	1536	53	5	708	5	DUSP11	2	74001052	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	7139	74001052	169198321	1030	69275											
STAMBP	10617	broad.mit.edu	37	chr2	74087157	74087157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctttgcttgactcttaGcctgccttttttaaatttca	4	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74087157	T	T	74087157	1	4	61	0	1	0	0	0	0	0	0	0	15368	986	34	3		3	STAMBP	2	74087157	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	86105	74087157	169112216	1031	69276											
SLC4A5	57835	broad.mit.edu	37	chr2	74534960	74534960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgccaggcccccagacCccatgccaccctggaagctg	9	20	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74534960	A	A	74534960	1	1	61	0	1	0	0	0	0	0	0	0	14771	638	22	2		2	SLC4A5	2	74534960	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	447803	74534960	168664413	1032	69277											
WBP1	23559	broad.mit.edu	37	chr2	74687330	74687330	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcttcaaccaatcatgcCaattttctcccctgcaggct	5	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74687330	T	T	74687330	1	4	61	0	1	0	0	0	0	0	0	0	17384	609	21	4		4	WBP1	2	74687330	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	152370	74687330	168512043	1033	69278											
TTC31	64427	broad.mit.edu	37	chr2	74717142	74717143	+	Intron	DNP	CC	TA	TA													agcctcccctcccctcccctCccctcccaggacatagtgga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	74717143	TA	TA	74717142	1	4	61	0	1	0	0	0	0	0	0	0	16826	870	30	4		4	TTC31	2	74717142	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	29812	74717142	168482231	1034	69279											
TTC31	64427	broad.mit.edu	37	chr2	74718475	74718475	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatccagccctggaaacccAgttcagggacagtgtggtga	12	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74718475	T	T	74718475	2	4	61	1	0	0	0	0	0	0	0	1	16826	175	7	5		5	TTC31	2	74718475	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1333	74718475	168480898	1035	69280											
FAM176A	84141	broad.mit.edu	37	chr2	75746805	75746805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcaactggatgatacacGtgaatggtgagagccatcaa	13	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75746805	T	T	75746805	1	4	61	0	1	0	0	0	0	0	0	0	5544	1160	40	3		3	FAM176A	2	75746805	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1028330	75746805	167452568	1036	69281											
LRRTM4	80059	broad.mit.edu	37	chr2	76975852	76975852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctctaggtagatggccGgtgctgccgacctggcgatg	14	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76975852	T	T	76975852	3	4	61	1	0	0	0	0	1	0	0	0	9129	1116	39	1	34	1	LRRTM4	2	76975852	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1229047	76975852	166223521	1037	69282											
LRRTM4	80059	broad.mit.edu	37	chr2	77008660	77008660	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttccaggtgcggtgcatcaCccctttctttgactcagaaa	8	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77008660	G	G	77008660	1	3	61	0	1	0	0	0	0	0	0	0	9129	522	18	4		4	LRRTM4	2	77008660	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32808	77008660	166190713	1038	69283											
LRRTM4	80059	broad.mit.edu	37	chr2	77745714	77745714	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagagagccacactcccGgcaataattttgtgaaatga	9	8	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77745714	T	T	77745714	2	4	61	1	0	0	0	0	0	0	0	1	9129	1103	39	1		1	LRRTM4	2	77745714	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	737054	77745714	165453659	1039	69284											
REG3G	130120	broad.mit.edu	37	chr2	79254878	79254878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacagctcaggggccatgCaaagagacctgcaatggcca	12	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79254878	A	A	79254878	1	1	61	0	1	0	0	0	0	0	0	0	13321	725	25	3		3	REG3G	2	79254878	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1509164	79254878	163944495	1040	69285											
REG1B	5968	broad.mit.edu	37	chr2	79314643	79314643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggaagaattcagagttGgggttgtgggaagtgtgggg	22	1	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79314643	T	T	79314643	1	4	61	0	1	0	0	0	0	0	0	0	13319	1363	47	2		2	REG1B	2	79314643	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59765	79314643	163884730	1041	69286											
REG1A	5967	broad.mit.edu	37	chr2	79348450	79348450	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaggtagaagagcctgaGctccagacataaaagggaaa	11	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79348450	C	C	79348450	1	2	61	0	1	0	0	0	0	0	0	0	13318	986	34	4		4	REG1A	2	79348450	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33807	79348450	163850923	1042	69287			1	54		6	6	1867	N	G_C	7.478035e-05
REG1A	5967	broad.mit.edu	37	chr2	79348632	79348632	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagaagctcttacctcaCcttcaagccttttccttacc	3	17	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79348632	T	T	79348632	1	4	61	0	1	0	0	0	0	0	0	0	13318	522	18	4		4	REG1A	2	79348632	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	182	79348632	163850741	1043	69288			1	54		6	6	1867	N	G_C	7.478035e-05
REG1A	5967	broad.mit.edu	37	chr2	79348699	79348699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcaggccaagaggccCagacagagttgccccaggcc	11	14	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79348699	A	A	79348699	3	1	61	1	0	0	0	0	1	0	0	0	13318	595	21	2	82	2	REG1A	2	79348699	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	67	79348699	163850674	1044	69289			1	54		6	6	1867	N	G_C	7.478035e-05
REG1A	5967	broad.mit.edu	37	chr2	79349394	79349394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaatgtcctgtgtagcaaGgtgcactgtagatgattgga	12	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79349394	T	T	79349394	1	4	61	0	1	0	0	0	0	0	0	0	13318	1015	35	2		2	REG1A	2	79349394	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	695	79349394	163849979	1045	69290			1	54		6	6	1867	N	G_C	7.478035e-05
REG1A	5967	broad.mit.edu	37	chr2	79349996	79349996	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcactggagcagtgggtcCctggtctcctacaagtcctg	13	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79349996	T	T	79349996	2	4	61	1	0	0	0	0	0	0	0	1	13318	610	22	4		4	REG1A	2	79349996	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	602	79349996	163849377	1046	69291			1	54		6	6	1867	N	G_C	7.478035e-05
REG1A	5967	broad.mit.edu	37	chr2	79350316	79350316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccttgtgaagacaagttctCctttgtctgcaagttcaaaa	8	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79350316	A	A	79350316	3	1	61	1	0	0	0	0	1	0	0	0	13318	855	30	3	494	3	REG1A	2	79350316	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	320	79350316	163849057	1047	69292			1	54		6	6	1867	N	G_C	7.478035e-05
CTNNA2	1496	broad.mit.edu	37	chr2	79463062	79463062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcaacaggacgctacccCactggctgagtttaggcata	13	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79463062	A	A	79463062	1	1	61	0	1	0	0	0	0	0	0	0	4047	609	21	2		2	CTNNA2	2	79463062	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	112746	79463062	163736311	1048	69293											
CTNNA2	1496	broad.mit.edu	37	chr2	79596602	79596602	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttatgaaggcacatgcacacGactgtagcggcacccctgtc	10	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79596602	C	C	79596602	1	2	61	0	1	0	0	0	0	0	0	0	4047	1073	37	4		4	CTNNA2	2	79596602	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	133540	79596602	163602771	1049	69294											
CTNNA2	1496	broad.mit.edu	37	chr2	79634828	79634828	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggatacaccagatagtcaAtgaattttccaggtataccg	8	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79634828	G	G	79634828	1	3	61	0	1	0	0	0	0	0	0	0	4047	116	4	5		5	CTNNA2	2	79634828	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	38226	79634828	163564545	1050	69295											
CTNNA2	1496	broad.mit.edu	37	chr2	79812877	79812877	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcccccggacaacatggCcaacatcccttaggagcaat	7	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79812877	T	T	79812877	1	4	61	0	1	0	0	0	0	0	0	0	4047	754	26	4		4	CTNNA2	2	79812877	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	178049	79812877	163386496	1051	69296											
CTNNA2	1496	broad.mit.edu	37	chr2	80085187	80085187	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtttgcagatgacccttgctCgtcggtaaagcgcggcacca	12	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80085187	A	A	80085187	4	1	61	1	0	0	0	0	0	1	0	0	4047	893	31	3	357	3	CTNNA2	2	80085187	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	272310	80085187	163114186	1052	69297											
CTNNA2	1496	broad.mit.edu	37	chr2	80097065	80097065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagaagacaacaggtgGgaaagattttagaaatgcta	11	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80097065	T	T	80097065	1	4	61	0	1	0	0	0	0	0	0	0	4047	1247	43	2		2	CTNNA2	2	80097065	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11878	80097065	163102308	1053	69298											
LRRTM1	347730	broad.mit.edu	37	chr2	80529373	80529373	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttgagagccactgggaCaatcacacctcgcattccct	10	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80529373	A	A	80529373	1	1	61	0	1	0	0	0	0	0	0	0	9126	493	17	3		3	LRRTM1	2	80529373	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	432308	80529373	162670000	1054	69299											
CTNNA2	1496	broad.mit.edu	37	chr2	80751240	80751241	+	Intron	DNP	GG	TT	TT													gtcctgcagggaaatagctgGggagagggactgtggcacag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	80751241	TT	TT	80751240	1	4	61	0	1	0	0	0	0	0	0	0	4047	1247	43	2		2	CTNNA2	2	80751240	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	221867	80751240	162448133	1055	69300											
DNAH6	1768	broad.mit.edu	37	chr2	84924788	84924788	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggatgaactggagcaGgttttagcggccaccagacc	13	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84924788	C	C	84924788	3	2	61	1	0	0	0	0	1	0	0	0	4645	991	35	4	7796	4	DNAH6	2	84924788	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4173548	84924788	158274585	1056	69301											
CAPG	822	broad.mit.edu	37	chr2	85628550	85628550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaaggtggggacccggCtccaaaggcacccgggtctt	15	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85628550	A	A	85628550	1	1	61	0	1	0	0	0	0	0	0	0	2647	812	28	3		3	CAPG	2	85628550	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	703762	85628550	157570823	1057	69302											
ST3GAL5	8869	broad.mit.edu	37	chr2	86108085	86108085	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtgtgatatggtttggcTctgtccccacccaaatctca	8	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86108085	C	C	86108085	1	2	61	0	1	0	0	0	0	0	0	0	15336	1566	54	5		5	ST3GAL5	2	86108085	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	479535	86108085	157091288	1058	69303											
CD8A	925	broad.mit.edu	37	chr2	87013028	87013028	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtttgaagtaatgtagtGgctgttgcacagggttagac	13	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87013028	T	T	87013028	1	4	61	0	1	0	0	0	0	0	0	0	3074	1363	47	2		2	CD8A	2	87013028	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	904943	87013028	156186345	1059	69304											
CD8B	926	broad.mit.edu	37	chr2	87042596	87042596	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagctcaccagggcagaacTtgagccccctatgacttggg	11	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87042596	C	C	87042596	1	2	61	0	1	0	0	0	0	0	0	0	3075	1624	56	5		5	CD8B	2	87042596	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29568	87042596	156156777	1060	69305											
RMND5A	64795	broad.mit.edu	37	chr2	87049589	87049589	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttaagtaaacaatgataaTgcattcaatataattttagg	5	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87049589	A	A	87049589	1	1	61	0	1	0	0	0	0	0	0	0	13508	1479	51	5		5	RMND5A	2	87049589	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6993	87049589	156149784	1061	69306											
RMND5A	64795	broad.mit.edu	37	chr2	87446938	87446938	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacagtttgatagttccccAcagtgtacctcctgccttct	6	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87446938	G	G	87446938	1	3	61	0	1	0	0	0	0	0	0	0	13508	174	6	5		5	RMND5A	2	87446938	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	397349	87446938	155752435	1062	69307											
RMND5A	64795	broad.mit.edu	37	chr2	87580982	87580982	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctggcccaaccttggcCttggcattgcccctggtcat	10	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87580982	T	T	87580982	1	4	61	0	1	0	0	0	0	0	0	0	13508	696	24	4		4	RMND5A	2	87580982	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	134044	87580982	155618391	1063	69308											
RMND5A	64795	broad.mit.edu	37	chr2	87866142	87866142	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtacagagtctctatgTccttcctttaagagttcttt	6	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87866142	C	C	87866142	1	2	61	0	1	0	0	0	0	0	0	0	13508	1682	58	5		5	RMND5A	2	87866142	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	285160	87866142	155333231	1064	69309											
SMYD1	150572	broad.mit.edu	37	chr2	88396283	88396283	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggatgacctcttcctgGgggtgaaagacaaccccaag	12	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88396283	A	A	88396283	3	1	61	1	0	0	0	0	1	0	0	0	14935	1232	43	4	890	4	SMYD1	2	88396283	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	530141	88396283	154803090	1065	69310											
SMYD1	150572	broad.mit.edu	37	chr2	88411652	88411652	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactgatagtctttcaagcCcccacatcacaggcttaggg	9	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88411652	A	A	88411652	1	1	61	0	1	0	0	0	0	0	0	0	14935	638	22	2		2	SMYD1	2	88411652	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15369	88411652	154787721	1066	69311											
FABP1	2168	broad.mit.edu	37	chr2	88427410	88427410	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaccctaaatagccactgcTggtagagctagaccctcact	9	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88427410	A	A	88427410	1	1	61	0	1	0	0	0	0	0	0	0	5401	1595	55	5		5	FABP1	2	88427410	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15758	88427410	154771963	1067	69312											
C2orf51	200523	broad.mit.edu	37	chr2	88828648	88828648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccccaagctaacagatGggtaccctgctttcaaaaga	7	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88828648	T	T	88828648	3	4	61	1	0	0	0	0	1	0	0	0	2195	1348	47	2	209	2	C2orf51	2	88828648	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	401238	88828648	154370725	1068	69313											
C2orf51	200523	broad.mit.edu	37	chr2	88828921	88828921	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctactgccagggtgtcccTgtcttcattgccatatagtc	9	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88828921	A	A	88828921	3	1	61	1	0	0	0	0	1	0	0	0	2195	1580	55	5	482	5	C2orf51	2	88828921	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	273	88828921	154370452	1069	69314											
RPIA	22934	broad.mit.edu	37	chr2	89049591	89049591	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgagggagaagcctttctGttgaccctgcaaggagcaga	13	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89049591	A	A	89049591	3	1	61	1	0	0	0	0	1	0	0	0	13664	1377	48	4	966	4	RPIA	2	89049591	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	220670	89049591	154149782	1070	69315											
MAL	4118	broad.mit.edu	37	chr2	95719290	95719290	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagaaaacagaaatgcccTtgatggtggaaaaaagaaaa	9	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95719290	C	C	95719290	1	2	61	0	1	0	0	0	0	0	0	0	9291	1624	56	5		5	MAL	2	95719290	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6669699	95719290	147480083	1071	69316											
ZNF514	84874	broad.mit.edu	37	chr2	95819058	95819058	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgcttatcaatatgaaacTgctaggaaatataatcaggg	8	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95819058	C	C	95819058	1	2	61	0	1	0	0	0	0	0	0	0	18086	1595	55	5		5	ZNF514	2	95819058	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	99768	95819058	147380315	1072	69317											
PROM2	150696	broad.mit.edu	37	chr2	95946936	95946936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtgggacagagggtatGgtcagggcagccagtccctg	19	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95946936	T	T	95946936	1	4	61	0	1	0	0	0	0	0	0	0	12662	1363	47	2		2	PROM2	2	95946936	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	127878	95946936	147252437	1073	69318											
ITPRIPL1	150771	broad.mit.edu	37	chr2	96994051	96994051	+	3'UTR	DEL	A	-	-													accttgatgtaaagaccattAaaaaaaaaacagaggaaggt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96994051	-	-	96994051	6	5	61	0	1	1	0	1	0	0	0	0	7994	377	13	0		0	ITPRIPL1	2	96994051	3'UTR	DEL	A	TCGA-17-Z031-01A-01W-0746-08	1047115	96994051	146205322	1074	69319											
NCAPH	23397	broad.mit.edu	37	chr2	97007238	97007238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaacccaaactctagagGttctagccattaagtattag	7	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97007238	T	T	97007238	1	4	61	0	1	0	0	0	0	0	0	0	10304	1276	44	3		3	NCAPH	2	97007238	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13187	97007238	146192135	1075	69320											
KIAA1310	55683	broad.mit.edu	37	chr2	97269867	97269867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtcaagcctctatgatcaCtctaagacccagaggcccat	7	14	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97269867	T	T	97269867	1	4	61	0	1	0	0	0	0	0	0	0	8292	580	20	4		4	KIAA1310	2	97269867	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	262629	97269867	145929506	1076	69321											
FAM178B	51252	broad.mit.edu	37	chr2	97631994	97631994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagacctgctcacaaggcCttccctgagccctcatcaca	7	16	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97631994	A	A	97631994	1	1	61	0	1	0	0	0	0	0	0	0	5549	696	24	2		2	FAM178B	2	97631994	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	362127	97631994	145567379	1077	69322											
ANKRD36B	57730	broad.mit.edu	37	chr2	98177030	98177030	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtgtactgaatcagaaCgtgcagcttatatgaactcc	9	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98177030	T	T	98177030	1	4	61	0	1	0	0	0	0	0	0	0	666	551	19	4		4	ANKRD36B	2	98177030	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	545036	98177030	145022343	1078	69323											
ZAP70	7535	broad.mit.edu	37	chr2	98349312	98349312	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaggaggcccccaggtggcTctaggggttacatcccctcc	13	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98349312	A	A	98349312	1	1	61	0	1	0	0	0	0	0	0	0	17641	1566	54	5		5	ZAP70	2	98349312	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	172282	98349312	144850061	1079	69324											
ZAP70	7535	broad.mit.edu	37	chr2	98349367	98349367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggccgcggaaggagcaGggcacatacgccctgtccct	14	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98349367	T	T	98349367	3	4	61	1	0	0	0	0	1	0	0	0	17641	991	35	2	595	2	ZAP70	2	98349367	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	55	98349367	144850006	1080	69325											
TMEM131	23505	broad.mit.edu	37	chr2	98443747	98443747	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctccgctgaagccgctGccaaggaagagcccaagagg	13	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98443747	A	A	98443747	1	1	61	0	1	0	0	0	0	0	0	0	16167	1334	46	4		4	TMEM131	2	98443747	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	94380	98443747	144755626	1081	69326											
VWA3B	200403	broad.mit.edu	37	chr2	98779259	98779259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcctgctaggcgggctGccacattcctgggcctgtct	13	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98779259	T	T	98779259	1	4	61	0	1	0	0	0	0	0	0	0	17368	1334	46	3		3	VWA3B	2	98779259	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	335512	98779259	144420114	1082	69327											
VWA3B	200403	broad.mit.edu	37	chr2	98850945	98850945	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgaaattcagataaaggGagcagggcatcctggcagca	13	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98850945	T	T	98850945	1	4	61	0	1	0	0	0	0	0	0	0	17368	1189	41	3		3	VWA3B	2	98850945	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71686	98850945	144348428	1083	69328											
CNGA3	1261	broad.mit.edu	37	chr2	99012599	99012599	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaatgcctgcatctacttTgccatttccaagttcattgg	8	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99012599	C	C	99012599	2	2	61	1	0	0	0	0	0	0	0	1	3630	1809	63	5		5	CNGA3	2	99012599	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	161654	99012599	144186774	1084	69329											
CNGA3	1261	broad.mit.edu	37	chr2	99013354	99013354	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catccgcagcattggctactCagacctgttctgcctctcaa	7	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99013354	A	A	99013354	4	1	61	1	0	0	0	0	0	1	0	0	3630	838	29	3	1747	3	CNGA3	2	99013354	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	755	99013354	144186019	1085	69330											
AFF3	3899	broad.mit.edu	37	chr2	100444957	100444957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcaggagcagtgcagacCagaaagtggacaagcaaggc	14	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100444957	A	A	100444957	1	1	61	0	1	0	0	0	0	0	0	0	358	609	21	2		2	AFF3	2	100444957	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1431603	100444957	142754416	1086	69331											
NMS	129521	broad.mit.edu	37	chr2	101096817	101096817	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acggcagtgatcccaccattTgccatgctctccacctcctc	6	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101096817	G	G	101096817	1	3	61	0	1	0	0	0	0	0	0	0	10597	1827	63	5		5	NMS	2	101096817	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	651860	101096817	142102556	1087	69332											
NPAS2	4862	broad.mit.edu	37	chr2	101521260	101521260	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaagaggtaagatgcagCtgtccccctgctcagcagag	12	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101521260	T	T	101521260	1	4	61	0	1	0	0	0	0	0	0	0	10658	812	28	4		4	NPAS2	2	101521260	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	424443	101521260	141678113	1088	69333											
TBC1D8	11138	broad.mit.edu	37	chr2	101667172	101667172	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacttgagtgtgtcagcaaGcaactatccaaagctctcct	7	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101667172	A	A	101667172	1	1	61	0	1	0	0	0	0	0	0	0	15747	986	34	4		4	TBC1D8	2	101667172	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	145912	101667172	141532201	1089	69334											
MAP4K4	9448	broad.mit.edu	37	chr2	102482824	102482824	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgggcacaccatgcacatGttggtaatttggtgctgcat	12	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102482824	T	T	102482824	1	4	61	0	1	0	0	0	0	0	0	0	9354	1392	48	3		3	MAP4K4	2	102482824	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	815652	102482824	140716549	1090	69335											
MAP4K4	9448	broad.mit.edu	37	chr2	102493354	102493354	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatttctgcttctgggtgAattaaggaagctacactttt	10	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102493354	T	T	102493354	1	4	61	0	1	0	0	0	0	0	0	0	9354	261	9	5		5	MAP4K4	2	102493354	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10530	102493354	140706019	1091	69336											
IL18R1	8809	broad.mit.edu	37	chr2	102979293	102979293	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttattcagaaaagaaaAgattctgcagtctgagttca	8	5	4	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102979293	C	C	102979293	1	2	61	0	1	0	0	0	0	0	0	0	7717	87	3	5		5	IL18R1	2	102979293	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	485939	102979293	140220080	1092	69337											
IL18RAP	8807	broad.mit.edu	37	chr2	103068670	103068670	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagccccctccagtccaGtccctgggatagagatgttg	12	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103068670	T	T	103068670	1	4	61	0	1	0	0	0	0	0	0	0	7718	1044	36	3		3	IL18RAP	2	103068670	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	89377	103068670	140130703	1093	69338											
SLC9A4	389015	broad.mit.edu	37	chr2	103095315	103095315	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcttccacctctaccacAggctgccaggcctcatgcca	8	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103095315	T	T	103095315	3	4	61	1	0	0	0	0	1	0	0	0	14830	179	7	5	280	5	SLC9A4	2	103095315	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	26645	103095315	140104058	1094	69339											
UXS1	80146	broad.mit.edu	37	chr2	106715267	106715267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagttataagcgtcatgaCaacagcagcaatccaccacc	6	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106715267	A	A	106715267	1	1	61	0	1	0	0	0	0	0	0	0	17236	493	17	3		3	UXS1	2	106715267	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3619952	106715267	136484106	1095	69340											
UXS1	80146	broad.mit.edu	37	chr2	106728958	106728958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttatgtccccgtgcctgcCttccccttagtggagggtag	13	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106728958	A	A	106728958	1	1	61	0	1	0	0	0	0	0	0	0	17236	696	24	2		2	UXS1	2	106728958	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13691	106728958	136470415	1096	69341											
UXS1	80146	broad.mit.edu	37	chr2	106739695	106739695	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcaacctcaggtttccagtCcattctcttgagttccagta	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106739695	A	A	106739695	1	1	61	0	1	0	0	0	0	0	0	0	17236	870	30	3		3	UXS1	2	106739695	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10737	106739695	136459678	1097	69342											
RGPD3	653489	broad.mit.edu	37	chr2	107029477	107029477	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacacatacagacaacttctCaaccaccaggctgtttagtt	5	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107029477	G	G	107029477	1	3	61	0	1	0	0	0	0	0	0	0	13395	841	29	4		4	RGPD3	2	107029477	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	289782	107029477	136169896	1098	69343											
RGPD3	653489	broad.mit.edu	37	chr2	107041678	107041678	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcagcagacacagggatGgaaaatccttctttggttga	10	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107041678	A	A	107041678	2	1	61	1	0	0	0	0	0	0	0	1	13395	1335	47	4		4	RGPD3	2	107041678	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12201	107041678	136157695	1099	69344											
RGPD3	653489	broad.mit.edu	37	chr2	107052728	107052728	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatagttcaatttactaaaAttgctttctaaatacacagt	3	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107052728	C	C	107052728	1	2	61	0	1	0	0	0	0	0	0	0	13395	116	4	5		5	RGPD3	2	107052728	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11050	107052728	136146645	1100	69345											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460148	107460148	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactgggcccatttctgcaGgtctccaggccccgcatgaa	12	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107460148	A	A	107460148	2	1	61	1	0	0	0	0	0	0	0	1	15340	991	35	4		4	ST6GAL2	2	107460148	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	407420	107460148	135739225	1101	69346											
SLC5A7	60482	broad.mit.edu	37	chr2	108618233	108618233	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagagaacatgatttccgatCcttctctgtctgaactagag	8	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108618233	A	A	108618233	1	1	61	0	1	0	0	0	0	0	0	0	14784	870	30	3		3	SLC5A7	2	108618233	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1158085	108618233	134581140	1102	69347											
ANAPC1	64682	broad.mit.edu	37	chr2	112625739	112625739	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgcacaaattttgcacttCtattgaaaagaaatctccag	6	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112625739	T	T	112625739	1	4	61	0	1	0	0	0	0	0	0	0	598	928	32	4		4	ANAPC1	2	112625739	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4007506	112625739	130573634	1103	69348											
TMEM87B	84910	broad.mit.edu	37	chr2	112824744	112824744	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattttgataaaggtggtatCtgacttgccatgttaaaata	8	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112824744	A	A	112824744	1	1	61	0	1	0	0	0	0	0	0	0	16334	928	32	3		3	TMEM87B	2	112824744	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	199005	112824744	130374629	1104	69349											
CKAP2L	150468	broad.mit.edu	37	chr2	113514405	113514405	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttctctttgtttgtttcTtttagaaagttatccaaaga	6	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113514405	C	C	113514405	2	2	61	1	0	0	0	0	0	0	0	1	3474	1606	56	5		5	CKAP2L	2	113514405	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	689661	113514405	129684968	1105	69350											
IL1F7	27178	broad.mit.edu	37	chr2	113676202	113676202	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcccttcatcttttataGggctcaggtgggctcctgga	12	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113676202	A	A	113676202	3	1	61	1	0	0	0	0	1	0	0	0	7725	1000	35	4	562	4	IL1F7	2	113676202	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	161797	113676202	129523171	1106	69351											
IL1F8	27177	broad.mit.edu	37	chr2	113780347	113780347	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaaggaactcttccacttCtttctacctgcaggaaagga	8	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113780347	A	A	113780347	3	1	61	1	0	0	0	0	1	0	0	0	7726	912	32	3	99	3	IL1F8	2	113780347	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104145	113780347	129419026	1107	69352											
IL1F8	27177	broad.mit.edu	37	chr2	113809382	113809382	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcactcctactccaggaagGactttcacggatgtcctcag	8	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113809382	A	A	113809382	1	1	61	0	1	0	0	0	0	0	0	0	7726	1189	41	4		4	IL1F8	2	113809382	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29035	113809382	129389991	1108	69353											
IL1RN	3557	broad.mit.edu	37	chr2	113875667	113875667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggaaaatgtctacaattGgtgtttatcaaatgctttca	8	5	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113875667	A	A	113875667	1	1	61	0	1	0	0	0	0	0	0	0	7735	1363	47	4		4	IL1RN	2	113875667	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66285	113875667	129323706	1109	69354											
CBWD2	150472	broad.mit.edu	37	chr2	114202811	114202811	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttggcagttgaatgaatgAacggagtatttcttggtact	11	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114202811	G	G	114202811	1	3	61	0	1	0	0	0	0	0	0	0	2739	261	9	5		5	CBWD2	2	114202811	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	327144	114202811	128996562	1110	69355											
DPP10	57628	broad.mit.edu	37	chr2	115990125	115990125	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttctgatttcccttgctGtgtgctttcttactcttctg	7	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115990125	A	A	115990125	1	1	61	0	1	0	0	0	0	0	0	0	4767	1392	48	4		4	DPP10	2	115990125	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1787314	115990125	127209248	1111	69356											
DPP10	57628	broad.mit.edu	37	chr2	116456143	116456143	+	Intron	SNP	C	A	A													aaaaacagaggaagatctctCactctttctcttgctcttgc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116456143	A	A	116456143	1	1	61	0	1	0	0	0	0	0	0	0	4767	841	29	3		3	DPP10	2	116456143	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	466018	116456143	126743230	1112	69357	319	2									
DPP10	57628	broad.mit.edu	37	chr2	116456152	116456152	+	Intron	SNP	T	C	C													ggaagatctctcactctttcTcttgctcttgctgtcactct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116456152	C	C	116456152	1	2	61	0	1	0	0	0	0	0	0	0	4767	1566	54	5		5	DPP10	2	116456152	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9	116456152	126743221	1113	69358	319	2									
DPP10	57628	broad.mit.edu	37	chr2	116538575	116538575	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttattattctgtgaaggtaAgataatacatgaattctgat	7	4	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116538575	C	C	116538575	1	2	61	0	1	0	0	0	0	0	0	0	4767	87	3	5		5	DPP10	2	116538575	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	82423	116538575	126660798	1114	69359											
TMEM177	80775	broad.mit.edu	37	chr2	120438478	120438478	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttgtgcagagacacaggAcaggcctcttggtgggttcc	13	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120438478	G	G	120438478	3	3	61	1	0	0	0	0	1	0	0	0	16217	275	10	5	51	5	TMEM177	2	120438478	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3899903	120438478	122760895	1115	69360											
TMEM177	80775	broad.mit.edu	37	chr2	120438500	120438500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcctcttggtgggttcctGtgcaggcctgtttggagttc	15	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120438500	A	A	120438500	3	1	61	1	0	0	0	0	1	0	0	0	16217	1377	48	4	73	4	TMEM177	2	120438500	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22	120438500	122760873	1116	69361											
PTPN4	5775	broad.mit.edu	37	chr2	120709587	120709587	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactgaatgaaggggaccaAgttgtactgatcaatggtcg	13	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120709587	C	C	120709587	3	2	61	1	0	0	0	0	1	0	0	0	12898	69	3	5	1765	5	PTPN4	2	120709587	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	271087	120709587	122489786	1117	69362											
EPB41L5	57669	broad.mit.edu	37	chr2	120885441	120885441	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatgagagtaagtaaatgttCcattatacatcagtgatacc	7	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120885441	A	A	120885441	1	1	61	0	1	0	0	0	0	0	0	0	5199	870	30	3		3	EPB41L5	2	120885441	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	175854	120885441	122313932	1118	69363											
TFCP2L1	29842	broad.mit.edu	37	chr2	121992753	121992753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcccaccacatgccacgGgacatgagcctctggctggc	11	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121992753	T	T	121992753	1	4	61	0	1	0	0	0	0	0	0	0	15919	1247	43	2		2	TFCP2L1	2	121992753	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1107312	121992753	121206620	1119	69364											
CNTNAP5	129684	broad.mit.edu	37	chr2	124854406	124854406	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcccctgcctcaacctcccGagtagctgggactacaggag	10	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124854406	T	T	124854406	1	4	61	0	1	0	0	0	0	0	0	0	3682	1073	37	3		3	CNTNAP5	2	124854406	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2861653	124854406	118344967	1120	69365											
CNTNAP5	129684	broad.mit.edu	37	chr2	125083729	125083729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggagacagaggagggaaGgtgaggatgatgtttctttg	18	2	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125083729	T	T	125083729	1	4	61	0	1	0	0	0	0	0	0	0	3682	1015	35	2		2	CNTNAP5	2	125083729	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	229323	125083729	118115644	1121	69366											
CNTNAP5	129684	broad.mit.edu	37	chr2	125285190	125285190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctgaaaggatttcaggCccagagaaaaaatggtttaa	9	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125285190	A	A	125285190	1	1	61	0	1	0	0	0	0	0	0	0	3682	754	26	3		3	CNTNAP5	2	125285190	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	201461	125285190	117914183	1122	69367											
CNTNAP5	129684	broad.mit.edu	37	chr2	125367303	125367303	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacatagagcaaatctaagTaggagttactgattcctgca	8	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125367303	C	C	125367303	1	2	61	0	1	0	0	0	0	0	0	0	3682	1653	57	5		5	CNTNAP5	2	125367303	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	82113	125367303	117832070	1123	69368											
CNTNAP5	129684	broad.mit.edu	37	chr2	125498123	125498123	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatgtgggacggaagaaggGcagatgggaaagacactagc	16	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125498123	C	C	125498123	1	2	61	0	1	0	0	0	0	0	0	0	3682	1218	42	4		4	CNTNAP5	2	125498123	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	130820	125498123	117701250	1124	69369											
CNTNAP5	129684	broad.mit.edu	37	chr2	125516320	125516320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgactacagcatgcaagCagaaagagtgggagaagttg	15	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125516320	A	A	125516320	1	1	61	0	1	0	0	0	0	0	0	0	3682	725	25	3		3	CNTNAP5	2	125516320	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18197	125516320	117683053	1125	69370											
CNTNAP5	129684	broad.mit.edu	37	chr2	125526947	125526947	+	Intron	DEL	A	-	-													cagaattctcagtgcctagcAcagggtctggcttgaaaaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125526947	-	-	125526947	6	5	61	0	1	1	0	1	0	0	0	0	3682	174	6	0		0	CNTNAP5	2	125526947	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	10627	125526947	117672426	1126	69371											
CNTNAP5	129684	broad.mit.edu	37	chr2	125611007	125611007	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttttgtggggtcacagtttCcctacttttcaaaatgatga	8	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125611007	G	G	125611007	1	3	61	0	1	0	0	0	0	0	0	0	3682	870	30	4		4	CNTNAP5	2	125611007	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	84060	125611007	117588366	1127	69372											
CNTNAP5	129684	broad.mit.edu	37	chr2	125611470	125611470	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttagctcctacttacaaGtgagaacatgaggtatttgg	9	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125611470	A	A	125611470	1	1	61	0	1	0	0	0	0	0	0	0	3682	1044	36	4		4	CNTNAP5	2	125611470	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	463	125611470	117587903	1128	69373											
CNTNAP5	129684	broad.mit.edu	37	chr2	125611661	125611661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatttgtgatgattccatGtctttgctattgcgaatagt	10	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125611661	T	T	125611661	1	4	61	0	1	0	0	0	0	0	0	0	3682	1392	48	3		3	CNTNAP5	2	125611661	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	191	125611661	117587712	1129	69374											
CNTNAP5	129684	broad.mit.edu	37	chr2	125624066	125624066	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgatactgaagagggtgCtgatcccacctgggcatcag	14	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125624066	T	T	125624066	1	4	61	0	1	0	0	0	0	0	0	0	3682	812	28	4		4	CNTNAP5	2	125624066	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12405	125624066	117575307	1130	69375											
CNTNAP5	129684	broad.mit.edu	37	chr2	125627248	125627248	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctttgttttctgttttcctGcagatggaccagcaacttcg	8	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125627248	C	C	125627248	1	2	61	0	1	0	0	0	0	0	0	0	3682	1334	46	4		4	CNTNAP5	2	125627248	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3182	125627248	117572125	1131	69376											
CNTNAP5	129684	broad.mit.edu	37	chr2	125660604	125660604	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgactgtccatgggacCttgacggaatccagctgtgg	13	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125660604	A	A	125660604	2	1	61	1	0	0	0	0	0	0	0	1	3682	668	24	2		2	CNTNAP5	2	125660604	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33356	125660604	117538769	1132	69377											
CYP27C1	339761	broad.mit.edu	37	chr2	127945071	127945071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgggctgcagagagcGcaggcaatgagcacccacat	14	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127945071	T	T	127945071	1	4	61	0	1	0	0	0	0	0	0	0	4193	1102	38	3		3	CYP27C1	2	127945071	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2284467	127945071	115254302	1133	69378											
CYP27C1	339761	broad.mit.edu	37	chr2	127960975	127960975	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaatatttgaagaaaagatCattgacattggtcacggttt	9	4	2	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127960975	A	A	127960975	3	1	61	1	0	0	0	0	1	0	0	0	4193	826	29	3	995	3	CYP27C1	2	127960975	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15904	127960975	115238398	1134	69379											
ERCC3	2071	broad.mit.edu	37	chr2	128015076	128015076	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatttggccaacgctggaggGaaggtcaaagaggtggaagg	17	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128015076	A	A	128015076	1	1	61	0	1	0	0	0	0	0	0	0	5256	1189	41	4		4	ERCC3	2	128015076	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54101	128015076	115184297	1135	69380											
MYO7B	4648	broad.mit.edu	37	chr2	128341865	128341865	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgctggccctcaagcccatGagcatcatctccctcctgga	8	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128341865	T	T	128341865	3	4	61	1	0	0	0	0	1	0	0	0	10177	1290	45	3	1558	3	MYO7B	2	128341865	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	326789	128341865	114857508	1136	69381											
MYO7B	4648	broad.mit.edu	37	chr2	128377823	128377823	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccctgcatatgggacctctCagaggtgcacaagagctgtg	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128377823	G	G	128377823	1	3	61	0	1	0	0	0	0	0	0	0	10177	841	29	4		4	MYO7B	2	128377823	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	35958	128377823	114821550	1137	69382											
MYO7B	4648	broad.mit.edu	37	chr2	128389161	128389162	+	Intron	INS	-	T	T													ctgccccagcactgtgctccINSttgacagccacacccatcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128389162	T	T	128389161	6	5	61	0	1	1	1	0	0	0	0	0	10177	696	24	0		0	MYO7B	2	128389161	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	11338	128389161	114810212	1138	69383											
LIMS2	55679	broad.mit.edu	37	chr2	128411949	128411949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaggtggcaggtgtgcCaggaagggctgtggcccagt	20	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128411949	A	A	128411949	1	1	61	0	1	0	0	0	0	0	0	0	8876	609	21	2		2	LIMS2	2	128411949	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22788	128411949	114787424	1139	69384											
LIMS2	55679	broad.mit.edu	37	chr2	128412222	128412222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgcctgctctctgcctggCccatgggctccctcgtggga	12	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128412222	A	A	128412222	1	1	61	0	1	0	0	0	0	0	0	0	8876	754	26	3		3	LIMS2	2	128412222	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	273	128412222	114787151	1140	69385											
RAB6C	84084	broad.mit.edu	37	chr2	130738129	130738129	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaggaaagccaaaggGctgaatgttacgtttattga	14	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130738129	A	A	130738129	2	1	61	1	0	0	0	0	0	0	0	1	13061	1190	42	4		4	RAB6C	2	130738129	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2325907	130738129	112461244	1141	69386											
POTEF	728378	broad.mit.edu	37	chr2	130862249	130862249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgctcgctcttttctggcAgctgtgactcacacaggtca	9	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130862249	T	T	130862249	1	4	61	0	1	0	0	0	0	0	0	0	12361	203	7	5		5	POTEF	2	130862249	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	124120	130862249	112337124	1142	69387											
SMPD4	55627	broad.mit.edu	37	chr2	130911119	130911119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtggcaacaaggggaccCagctatgacgctcggggtgt	15	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130911119	A	A	130911119	1	1	61	0	1	0	0	0	0	0	0	0	14921	609	21	2		2	SMPD4	2	130911119	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	48870	130911119	112288254	1143	69388											
FAM123C	205147	broad.mit.edu	37	chr2	131520623	131520623	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcgtgccctcctaggCccgtggctttcaggccccca	11	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131520623	T	T	131520623	2	4	61	1	0	0	0	0	0	0	0	1	5470	726	26	4		4	FAM123C	2	131520623	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	609504	131520623	111678750	1144	69389											
PLEKHB2	55041	broad.mit.edu	37	chr2	131954998	131954998	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttcctgcaaccacttgAgaatttctgtgctactaagc	6	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131954998	C	C	131954998	1	2	61	0	1	0	0	0	0	0	0	0	12160	319	11	5		5	PLEKHB2	2	131954998	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	434375	131954998	111244375	1145	69390											
POTEE	445582	broad.mit.edu	37	chr2	131984435	131984435	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttggtgtacatgagcaaAaacagcaagtcgtgaaattt	9	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131984435	T	T	131984435	4	4	61	1	0	0	0	0	0	1	0	0	12360	15	1	5	864	5	POTEE	2	131984435	Nonsense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29437	131984435	111214938	1146	69391											
PLEKHB2	55041	broad.mit.edu	37	chr2	132044885	132044885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatggtaatgtagacacCacaggtaagctgggcttggt	13	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132044885	A	A	132044885	1	1	61	0	1	0	0	0	0	0	0	0	12160	609	21	2		2	PLEKHB2	2	132044885	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60450	132044885	111154488	1147	69392											
TUBA3D	113457	broad.mit.edu	37	chr2	132233854	132233855	+	Intron	DNP	CG	GA	GA													tggacagagggacgttgttgCgggcctgggcgctgagagga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	132233855	GA	GA	132233854	1	3	61	0	1	0	0	0	0	0	0	0	16873	783	27	4		4	TUBA3D	2	132233854	Intron	DNP	CG	TCGA-17-Z031-01A-01W-0746-08	188969	132233854	110965519	1148	69393											
NCKAP5	344148	broad.mit.edu	37	chr2	133503809	133503809	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaacagaacagacattcCggaaatagactcacacatat	8	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133503809	A	A	133503809	1	1	61	0	1	0	0	0	0	0	0	0	10318	667	23	1		1	NCKAP5	2	133503809	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1269955	133503809	109695564	1149	69394											
NCKAP5	344148	broad.mit.edu	37	chr2	133540303	133540303	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttacttgggctcccatgctGactgctgaagctgcctgagc	11	13	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133540303	C	C	133540303	3	2	61	1	0	0	0	0	1	0	0	0	10318	1299	45	4	1676	4	NCKAP5	2	133540303	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36494	133540303	109659070	1150	69395											
NCKAP5	344148	broad.mit.edu	37	chr2	133540444	133540444	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgtggaagagttctgccGggtaagagaattgcctctct	12	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133540444	T	T	133540444	2	4	61	1	0	0	0	0	0	0	0	1	10318	1115	39	1		1	NCKAP5	2	133540444	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	141	133540444	109658929	1151	69396											
NCKAP5	344148	broad.mit.edu	37	chr2	133542197	133542197	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagaccttttaaagaaagtAtagtctcttgcagcagctct	7	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133542197	G	G	133542197	2	3	61	1	0	0	0	0	0	0	0	1	10318	456	16	5		5	NCKAP5	2	133542197	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1753	133542197	109657176	1152	69397											
NCKAP5	344148	broad.mit.edu	37	chr2	133554165	133554165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggaaggaaaataaccacCaaaacaagtgttctgaaggc	10	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133554165	A	A	133554165	1	1	61	0	1	0	0	0	0	0	0	0	10318	609	21	2		2	NCKAP5	2	133554165	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11968	133554165	109645208	1153	69398											
NCKAP5	344148	broad.mit.edu	37	chr2	133713820	133713820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaatttttaaaatgaccaGtgaaagcttgttgggtttag	9	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133713820	T	T	133713820	1	4	61	0	1	0	0	0	0	0	0	0	10318	1044	36	3		3	NCKAP5	2	133713820	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	159655	133713820	109485553	1154	69399											
NCKAP5	344148	broad.mit.edu	37	chr2	133965642	133965642	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagctgggccaggtgtggtGgctcatgcctgtaatcccaa	13	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133965642	C	C	133965642	1	2	61	0	1	0	0	0	0	0	0	0	10318	1363	47	4		4	NCKAP5	2	133965642	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	251822	133965642	109233731	1155	69400											
NCKAP5	344148	broad.mit.edu	37	chr2	134076315	134076315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctgtgccagtccatccCtggaagagcaatggtgcaat	11	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134076315	A	A	134076315	1	1	61	0	1	0	0	0	0	0	0	0	10318	696	24	2		2	NCKAP5	2	134076315	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	110673	134076315	109123058	1156	69401											
NCKAP5	344148	broad.mit.edu	37	chr2	134102021	134102021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaaacgcgaggcagggaGttgaagatagtgggggagaa	17	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134102021	T	T	134102021	1	4	61	0	1	0	0	0	0	0	0	0	10318	1044	36	3		3	NCKAP5	2	134102021	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25706	134102021	109097352	1157	69402											
NCKAP5	344148	broad.mit.edu	37	chr2	134104280	134104280	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggccctcacgaaatacaaGgatgagaacttgtgaataaa	9	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134104280	A	A	134104280	1	1	61	0	1	0	0	0	0	0	0	0	10318	1015	35	4		4	NCKAP5	2	134104280	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2259	134104280	109095093	1158	69403											
NCKAP5	344148	broad.mit.edu	37	chr2	134134335	134134335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttcccatcttgatcacaCtgggactagaaatatgaaag	7	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134134335	A	A	134134335	1	1	61	0	1	0	0	0	0	0	0	0	10318	580	20	3		3	NCKAP5	2	134134335	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30055	134134335	109065038	1159	69404											
NCKAP5	344148	broad.mit.edu	37	chr2	134139337	134139337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatagcagccactggcaCcataaactggatacaaatac	7	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134139337	A	A	134139337	1	1	61	0	1	0	0	0	0	0	0	0	10318	522	18	3		3	NCKAP5	2	134139337	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5002	134139337	109060036	1160	69405											
NCKAP5	344148	broad.mit.edu	37	chr2	134279985	134279985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcaccccatggagatgcCtttggaaaggcagcaagcct	12	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134279985	A	A	134279985	1	1	61	0	1	0	0	0	0	0	0	0	10318	696	24	2		2	NCKAP5	2	134279985	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	140648	134279985	108919388	1161	69406											
MGAT5	4249	broad.mit.edu	37	chr2	135027871	135027871	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaaacatttgagaagtTttgttctccacgataaagag	8	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135027871	G	G	135027871	1	3	61	0	1	0	0	0	0	0	0	0	9641	1856	64	5		5	MGAT5	2	135027871	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	747886	135027871	108171502	1162	69407											
MGAT5	4249	broad.mit.edu	37	chr2	135099322	135099322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcagcttcactggctgaGctcaaggagtaaggagatta	11	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135099322	T	T	135099322	3	4	61	1	0	0	0	0	1	0	0	0	9641	962	34	3	995	3	MGAT5	2	135099322	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71451	135099322	108100051	1163	69408											
TMEM163	81615	broad.mit.edu	37	chr2	135316183	135316183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgagggagggttctggaCagtagagacaaaataccttg	13	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135316183	A	A	135316183	1	1	61	0	1	0	0	0	0	0	0	0	16201	493	17	3		3	TMEM163	2	135316183	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	216861	135316183	107883190	1164	69409											
YSK4	80122	broad.mit.edu	37	chr2	135743637	135743637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatttgatatgtgattgaCttatttgctaaactatcatg	6	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135743637	A	A	135743637	3	1	61	1	0	0	0	0	1	0	0	0	17622	564	20	3	1197	3	YSK4	2	135743637	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	427454	135743637	107455736	1165	69410											
YSK4	80122	broad.mit.edu	37	chr2	135762841	135762841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtattaagcctagtaccCattaattatttttcctgatc	5	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135762841	A	A	135762841	1	1	61	0	1	0	0	0	0	0	0	0	17622	609	21	2		2	YSK4	2	135762841	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19204	135762841	107436532	1166	69411											
LCT	3938	broad.mit.edu	37	chr2	136564957	136564957	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaaggtctataccatcgAgcctgtaggctgggaacatc	11	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136564957	C	C	136564957	3	2	61	1	0	0	0	0	1	0	0	0	8765	304	11	5	1905	5	LCT	2	136564957	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	802116	136564957	106634416	1167	69412											
THSD7B	80731	broad.mit.edu	37	chr2	137748367	137748367	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatactgattaggacacGccacagtgcctggccgatgg	14	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137748367	T	T	137748367	1	4	61	0	1	0	0	0	0	0	0	0	16003	1102	38	3		3	THSD7B	2	137748367	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1183410	137748367	105451006	1168	69413											
THSD7B	80731	broad.mit.edu	37	chr2	137814281	137814281	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcagcaccggatggtgcGctgcattcagaagctgaacc	12	12	1	2	rs147127072	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137814281	A	A	137814281	3	1	61	1	0	0	0	0	1	0	0	0	16003	1087	38	4	344	4	THSD7B	2	137814281	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	65914	137814281	105385092	1169	69414											
THSD7B	80731	broad.mit.edu	37	chr2	137969598	137969599	+	Intron	INS	-	A	A													atcctaatgtgaatcacaacINSaatcacgtacatgtaaaatt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137969599	A	A	137969598	6	5	61	0	1	1	1	0	0	0	0	0	16003	493	17	0		0	THSD7B	2	137969598	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	155317	137969598	105229775	1170	69415											
THSD7B	80731	broad.mit.edu	37	chr2	137990656	137990656	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgtaggcattcagactcgGagagtcttctgtgtcaagag	14	7	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137990656	T	T	137990656	2	4	61	1	0	0	0	0	0	0	0	1	16003	1161	41	3		3	THSD7B	2	137990656	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21058	137990656	105208717	1171	69416											
THSD7B	80731	broad.mit.edu	37	chr2	137996972	137996972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggaagccttatgccacCccggctctcattcacccact	7	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137996972	A	A	137996972	1	1	61	0	1	0	0	0	0	0	0	0	16003	638	22	2		2	THSD7B	2	137996972	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6316	137996972	105202401	1172	69417											
THSD7B	80731	broad.mit.edu	37	chr2	138110802	138110802	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtcagaaagaaattgggtAatgagtatggtggaattgcc	14	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138110802	T	T	138110802	1	4	61	0	1	0	0	0	0	0	0	0	16003	377	13	5		5	THSD7B	2	138110802	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	113830	138110802	105088571	1173	69418											
THSD7B	80731	broad.mit.edu	37	chr2	138413070	138413070	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtatcctttcctctcataGggtggagactgtggggaagg	14	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138413070	A	A	138413070	5	1	61	1	0	0	0	0	0	0	1	0	16003	1014	35	4	3939	4	THSD7B	2	138413070	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	302268	138413070	104786303	1174	69419											
NXPH2	11249	broad.mit.edu	37	chr2	139428571	139428571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgagtttataatcaacaCtgtaaaaggcaatgtaaatg	8	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139428571	A	A	139428571	3	1	61	1	0	0	0	0	1	0	0	0	10886	565	20	3	82	3	NXPH2	2	139428571	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1015501	139428571	103770802	1175	69420											
NXPH2	11249	broad.mit.edu	37	chr2	139428608	139428608	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcaaatgaccttgaaggGcttggagcacaaccaagaca	10	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139428608	A	A	139428608	3	1	61	1	0	0	0	0	1	0	0	0	10886	1203	42	4	119	4	NXPH2	2	139428608	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37	139428608	103770765	1176	69421											
NXPH2	11249	broad.mit.edu	37	chr2	139480020	139480021	+	Intron	DNP	CC	AA	AA													agggcagcgtgaagactcacCcagtaagcatgggcaagcgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	139480021	AA	AA	139480020	1	1	61	0	1	0	0	0	0	0	0	0	10886	638	22	2		2	NXPH2	2	139480020	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	51412	139480020	103719353	1177	69422											
LRP1B	53353	broad.mit.edu	37	chr2	140992511	140992511	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attatagaatcacttttcatCgatacatatcatgttaattc	3	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140992511	A	A	140992511	1	1	61	0	1	0	0	0	0	0	0	0	9042	899	31	3		3	LRP1B	2	140992511	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1512491	140992511	102206862	1178	69423											
LRP1B	53353	broad.mit.edu	37	chr2	141027956	141027956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacaatttcattgttattGgcaacattattgctgaaagc	7	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141027956	T	T	141027956	1	4	61	0	1	0	0	0	0	0	0	0	9042	1363	47	2		2	LRP1B	2	141027956	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	35445	141027956	102171417	1179	69424											
LRP1B	53353	broad.mit.edu	37	chr2	141055368	141055368	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggcttctgggtgctgctTttacttacagtactgacatc	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141055368	A	A	141055368	1	1	61	0	1	0	0	0	0	0	0	0	9042	1856	64	5		5	LRP1B	2	141055368	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27412	141055368	102144005	1180	69425											
LRP1B	53353	broad.mit.edu	37	chr2	141081474	141081474	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacttacaatctagttgttTataacgatgagatatcaaaa	5	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141081474	A	A	141081474	4	1	61	1	0	0	0	0	0	1	0	0	9042	1763	61	5	1341	5	LRP1B	2	141081474	Nonsense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	26106	141081474	102117899	1181	69426											
LRP1B	53353	broad.mit.edu	37	chr2	141122288	141122288	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcctctccatcacacacCcagaaatgtagtttgcagag	7	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141122288	G	G	141122288	3	3	61	1	0	0	0	0	1	0	0	0	9042	624	22	4	2806	4	LRP1B	2	141122288	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40814	141122288	102077085	1182	69427											
LRP1B	53353	broad.mit.edu	37	chr2	141182979	141182979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcacccactttcttcccCcagccccgccgagacagagt	7	18	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141182979	A	A	141182979	1	1	61	0	1	0	0	0	0	0	0	0	9042	638	22	2		2	LRP1B	2	141182979	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60691	141182979	102016394	1183	69428											
LRP1B	53353	broad.mit.edu	37	chr2	141208192	141208192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatccacggtgtcacatttCcaccagaatggaatacattt	6	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141208192	A	A	141208192	3	1	61	1	0	0	0	0	1	0	0	0	9042	856	30	3	3913	3	LRP1B	2	141208192	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	25213	141208192	101991181	1184	69429											
LRP1B	53353	broad.mit.edu	37	chr2	141283910	141283910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggaactcaaccgtggcaCaggttgaaactagaaaaaca	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141283910	A	A	141283910	3	1	61	1	0	0	0	0	1	0	0	0	9042	478	17	3	6203	3	LRP1B	2	141283910	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	75718	141283910	101915463	1185	69430											
LRP1B	53353	broad.mit.edu	37	chr2	141474207	141474207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagtttgagcccctaaCaaaataggtgtgaaacagaa	10	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141474207	A	A	141474207	1	1	61	0	1	0	0	0	0	0	0	0	9042	493	17	3		3	LRP1B	2	141474207	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	190297	141474207	101725166	1186	69431											
LRP1B	53353	broad.mit.edu	37	chr2	141528456	141528456	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgaactcataccttgacAtgacatacggttcttttgga	7	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141528456	T	T	141528456	3	4	61	1	0	0	0	0	1	0	0	0	9042	217	8	5	8411	5	LRP1B	2	141528456	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	54249	141528456	101670917	1187	69432											
LRP1B	53353	broad.mit.edu	37	chr2	141641395	141641395	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttctttacccatatcttGggtccaaagcaatggccctg	7	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141641395	T	T	141641395	3	4	61	1	0	0	0	0	1	0	0	0	9042	1348	47	2	9907	2	LRP1B	2	141641395	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	112939	141641395	101557978	1188	69433											
LRP1B	53353	broad.mit.edu	37	chr2	141656696	141656697	+	Intron	DNP	CT	AA	AA													ttgcatgaagttctccaggtCtatgggaaccttgcagcata							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	141656697	AA	AA	141656696	1	1	61	0	1	0	0	0	0	0	0	0	9042	928	32	3		3	LRP1B	2	141656696	Intron	DNP	CT	TCGA-17-Z031-01A-01W-0746-08	15301	141656696	101542677	1189	69434											
LRP1B	53353	broad.mit.edu	37	chr2	141709464	141709464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttgctgctaatgcatcttCcacttttgcatacgaattgg	7	9	1	0	rs28483746		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141709464	A	A	141709464	3	1	61	1	0	0	0	0	1	0	0	0	9042	855	30	3	11158	3	LRP1B	2	141709464	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	52768	141709464	101489909	1190	69435											
KYNU	8942	broad.mit.edu	37	chr2	143742745	143742745	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattttgcctgctggtgttcCtacaaggtacaaacgagtta	10	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143742745	T	T	143742745	2	4	61	1	0	0	0	0	0	0	0	1	8659	668	24	4		4	KYNU	2	143742745	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2033281	143742745	99456628	1191	69436											
KYNU	8942	broad.mit.edu	37	chr2	143779220	143779220	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctacacgcttttaaacgacCagaaatcacaagaactcaca	5	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143779220	T	T	143779220	1	4	61	0	1	0	0	0	0	0	0	0	8659	609	21	4		4	KYNU	2	143779220	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36475	143779220	99420153	1192	69437											
ARHGAP15	55843	broad.mit.edu	37	chr2	144179629	144179629	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagtgcctcctccacctgCattcaggtaaattaacaagc	6	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144179629	T	T	144179629	1	4	61	0	1	0	0	0	0	0	0	0	868	725	25	4		4	ARHGAP15	2	144179629	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	400409	144179629	99019744	1193	69438											
ARHGAP15	55843	broad.mit.edu	37	chr2	144329408	144329408	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaattcaatatcccatcagtCctgggggctggagtatgtat	11	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144329408	A	A	144329408	1	1	61	0	1	0	0	0	0	0	0	0	868	870	30	3		3	ARHGAP15	2	144329408	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	149779	144329408	98869965	1194	69439											
ARHGAP15	55843	broad.mit.edu	37	chr2	144344513	144344513	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccatccctctccctttcCtccctccaacacagctctgt	2	22	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144344513	T	T	144344513	1	4	61	0	1	0	0	0	0	0	0	0	868	696	24	4		4	ARHGAP15	2	144344513	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15105	144344513	98854860	1195	69440											
ARHGAP15	55843	broad.mit.edu	37	chr2	144344606	144344606	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttggcactgttcctatgtGatgatcctgaggaatggaca	11	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144344606	C	C	144344606	1	2	61	0	1	0	0	0	0	0	0	0	868	1305	45	4		4	ARHGAP15	2	144344606	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	93	144344606	98854767	1196	69441											
ARHGAP15	55843	broad.mit.edu	37	chr2	144467603	144467603	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttctggcactccattcTttttctgtacactttggtct	6	11	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144467603	G	G	144467603	1	3	61	0	1	0	0	0	0	0	0	0	868	1624	56	5		5	ARHGAP15	2	144467603	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	122997	144467603	98731770	1197	69442											
ZEB2	9839	broad.mit.edu	37	chr2	145147418	145147418	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgctcctccgcctcccgcTtgcagtaggaatacctgtga	9	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145147418	A	A	145147418	3	1	61	1	0	0	0	0	1	0	0	0	17750	1609	56	5	403	5	ZEB2	2	145147418	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	679815	145147418	98051955	1198	69443											
ZEB2	9839	broad.mit.edu	37	chr2	145153936	145153936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatattatgaaatgtacaGcaggacgggaagctctaacc	9	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145153936	T	T	145153936	1	4	61	0	1	0	0	0	0	0	0	0	17750	986	34	3		3	ZEB2	2	145153936	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6518	145153936	98045437	1199	69444											
ZEB2	9839	broad.mit.edu	37	chr2	145159004	145159004	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcatgcttatttatctgctCagtctttcagagttgcaata	7	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145159004	A	A	145159004	1	1	61	0	1	0	0	0	0	0	0	0	17750	841	29	3		3	ZEB2	2	145159004	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5068	145159004	98040369	1200	69445											
ZEB2	9839	broad.mit.edu	37	chr2	145182411	145182411	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtggcttctggccccatagTgtcatagtcttccttcattt	8	12	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145182411	A	A	145182411	3	1	61	1	0	0	0	0	1	0	0	0	17750	1696	59	5	3317	5	ZEB2	2	145182411	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23407	145182411	98016962	1201	69446											
EPC2	26122	broad.mit.edu	37	chr2	149519400	149519400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagatgttgaaactgagacGagaatttagtagagccataa	10	4	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149519400	T	T	149519400	3	4	61	1	0	0	0	0	1	0	0	0	5203	1058	37	3	734	3	EPC2	2	149519400	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4336989	149519400	93679973	1202	69447											
KIF5C	3800	broad.mit.edu	37	chr2	149803270	149803270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttcagaagaaacagggGtctcagataatttttagaat	9	4	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149803270	T	T	149803270	1	4	61	0	1	0	0	0	0	0	0	0	8377	1276	44	3		3	KIF5C	2	149803270	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	283870	149803270	93396103	1203	69448											
TNFAIP6	7130	broad.mit.edu	37	chr2	152235858	152235858	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtaacatctttgttctttTgcctccttccccgcaacagg	7	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152235858	A	A	152235858	1	1	61	0	1	0	0	0	0	0	0	0	16398	1827	63	5		5	TNFAIP6	2	152235858	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2432588	152235858	90963515	1204	69449											
RIF1	55183	broad.mit.edu	37	chr2	152319744	152319744	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatagaccttttagtcCatcccccttgaataatattt	4	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152319744	T	T	152319744	3	4	61	1	0	0	0	0	1	0	0	0	13468	594	21	4	3824	4	RIF1	2	152319744	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83886	152319744	90879629	1205	69450											
NEB	4703	broad.mit.edu	37	chr2	152499460	152499460	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacagtctgatttttaatgaGaatcaagaatttcagctcag	8	6	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152499460	T	T	152499460	1	4	61	0	1	0	0	0	0	0	0	0	10397	957	33	3		3	NEB	2	152499460	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	179716	152499460	90699913	1206	69451											
NEB	4703	broad.mit.edu	37	chr2	152522015	152522015	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctatgggcacccagccgatCcctttcatccaattggtgaa	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152522015	A	A	152522015	2	1	61	1	0	0	0	0	0	0	0	1	10397	842	30	3		3	NEB	2	152522015	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22555	152522015	90677358	1207	69452											
NEB	4703	broad.mit.edu	37	chr2	152544162	152544162	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctggtgttcttggtgttgGctttggctgccaacagggga	16	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152544162	A	A	152544162	3	1	61	1	0	0	0	0	1	0	0	0	10397	1203	42	4	23813	4	NEB	2	152544162	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22147	152544162	90655211	1208	69453											
FMNL2	114793	broad.mit.edu	37	chr2	153415247	153415248	+	Intron	INS	-	T	T													gatttttttttttttttcccINScaacagatgggtcagagaat					rs70974869		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153415248	T	T	153415247	6	5	61	0	1	1	1	0	0	0	0	0	6010	638	22	0		0	FMNL2	2	153415247	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	871085	153415247	89784126	1209	69454											
GALNT13	114805	broad.mit.edu	37	chr2	154801186	154801186	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcaaatactgtctttataGagatgagaaaagtggtgcct	10	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154801186	T	T	154801186	1	4	61	0	1	0	0	0	0	0	0	0	6273	957	33	3		3	GALNT13	2	154801186	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1385939	154801186	88398187	1210	69455											
GALNT13	114805	broad.mit.edu	37	chr2	155069229	155069229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcccctccttcttcccccCatccttcttctccttctaag	2	20	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155069229	A	A	155069229	1	1	61	0	1	0	0	0	0	0	0	0	6273	609	21	2		2	GALNT13	2	155069229	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	268043	155069229	88130144	1211	69456											
GALNT13	114805	broad.mit.edu	37	chr2	155143671	155143671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagttcacagaagcggtGgaagccaaacaattggctca	12	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155143671	T	T	155143671	1	4	61	0	1	0	0	0	0	0	0	0	6273	1363	47	2		2	GALNT13	2	155143671	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	74442	155143671	88055702	1212	69457											
GALNT13	114805	broad.mit.edu	37	chr2	155157959	155157959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccttggagattgttacttGctcccatgttggtcatgttt	9	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155157959	T	T	155157959	3	4	61	1	0	0	0	0	1	0	0	0	6273	1319	46	3	1039	3	GALNT13	2	155157959	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14288	155157959	88041414	1213	69458											
GALNT13	114805	broad.mit.edu	37	chr2	155295170	155295170	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttggatgtttctagactcAatggacctgtaatcatgtta	9	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155295170	C	C	155295170	3	2	61	1	0	0	0	0	1	0	0	0	6273	130	5	5	1500	5	GALNT13	2	155295170	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	137211	155295170	87904203	1214	69459											
KCNJ3	3760	broad.mit.edu	37	chr2	155602269	155602269	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agattttcagttgaaacctgGacattaattgaaacttgatc	7	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155602269	A	A	155602269	1	1	61	0	1	0	0	0	0	0	0	0	8122	1189	41	4		4	KCNJ3	2	155602269	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	307099	155602269	87597104	1215	69460											
KCNJ3	3760	broad.mit.edu	37	chr2	155711649	155711649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcaacgaataagttcagttCcgggcaactcagaagaaaaa	8	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155711649	A	A	155711649	3	1	61	1	0	0	0	0	1	0	0	0	8122	855	30	3	1340	3	KCNJ3	2	155711649	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	109380	155711649	87487724	1216	69461											
ACVR1C	130399	broad.mit.edu	37	chr2	158406903	158406903	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaaccaacagaggtagAcctaaccaaagaaaagatgg	9	8	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158406903	G	G	158406903	2	3	61	1	0	0	0	0	0	0	0	1	222	289	10	5		5	ACVR1C	2	158406903	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2695254	158406903	84792470	1217	69462											
ACVR1C	130399	broad.mit.edu	37	chr2	158412629	158412629	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagatccagaggcggtcaCatcataaatcagatctttca	8	11	5	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158412629	G	G	158412629	3	3	61	1	0	0	0	0	1	0	0	0	222	478	17	4	989	4	ACVR1C	2	158412629	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5726	158412629	84786744	1218	69463											
ACVR1	90	broad.mit.edu	37	chr2	158595116	158595116	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagaattgtgttcggttagCaagagagtacaggttgcccc	12	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158595116	G	G	158595116	1	3	61	0	1	0	0	0	0	0	0	0	220	725	25	4		4	ACVR1	2	158595116	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	182487	158595116	84604257	1219	69464											
UPP2	151531	broad.mit.edu	37	chr2	158922130	158922130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttcttactacacacaacCcaaccaatgtgaccttaaac	3	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158922130	A	A	158922130	1	1	61	0	1	0	0	0	0	0	0	0	17139	638	22	2		2	UPP2	2	158922130	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	327014	158922130	84277243	1220	69465											
TANC1	85461	broad.mit.edu	37	chr2	159936828	159936829	+	Intron	DEL	AG	-	-													tactgcttctagaagagagcAgagagtgtcagggagtgaga					rs34649760		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159936829	-	-	159936828	6	5	61	0	1	1	0	1	0	0	0	0	15663	203	7	0		0	TANC1	2	159936828	Intron	DEL	AG	TCGA-17-Z031-01A-01W-0746-08	1014698	159936828	83262545	1221	69466											
TANC1	85461	broad.mit.edu	37	chr2	160043538	160043538	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatactcccaacgtgaaggtGagcaaccttctgcacagaga	9	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160043538	T	T	160043538	1	4	61	0	1	0	0	0	0	0	0	0	15663	1305	45	3		3	TANC1	2	160043538	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	106710	160043538	83155835	1222	69467											
BAZ2B	29994	broad.mit.edu	37	chr2	160239263	160239263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttctcccagatcaatgCcacctgaagtgtctcttttg	7	13	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160239263	A	A	160239263	3	1	61	1	0	0	0	0	1	0	0	0	1337	739	26	3	2746	3	BAZ2B	2	160239263	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	195725	160239263	82960110	1223	69468											
PLA2R1	22925	broad.mit.edu	37	chr2	160806217	160806217	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaacgcagtcaccaaggaggGaggactcctcatctttccaa	9	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160806217	A	A	160806217	3	1	61	1	0	0	0	0	1	0	0	0	12105	1174	41	4	812	4	PLA2R1	2	160806217	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	566954	160806217	82393156	1224	69469											
PLA2R1	22925	broad.mit.edu	37	chr2	160813101	160813101	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatgcgtccagttcttcCaactgcttgggtctttgggg	13	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160813101	T	T	160813101	4	4	61	1	0	0	0	0	0	1	0	0	12105	595	21	4	1497	4	PLA2R1	2	160813101	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6884	160813101	82386272	1225	69470											
PLA2R1	22925	broad.mit.edu	37	chr2	160813135	160813135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggggatattcagcagaaGgcactatcaaaaaatgtcaa	9	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160813135	T	T	160813135	3	4	61	1	0	0	0	0	1	0	0	0	12105	1000	35	2	1531	2	PLA2R1	2	160813135	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34	160813135	82386238	1226	69471											
PLA2R1	22925	broad.mit.edu	37	chr2	160813153	160813153	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggcactatcaaaaaatgtCaaaacaaaacattcatttct	3	8	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160813153	T	T	160813153	1	4	61	0	1	0	0	0	0	0	0	0	12105	841	29	4		4	PLA2R1	2	160813153	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18	160813153	82386220	1227	69472											
RBMS1	5937	broad.mit.edu	37	chr2	161141660	161141660	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtagtcccagctgctGgggaggctgaggtgggaaga	17	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161141660	A	A	161141660	1	1	61	0	1	0	0	0	0	0	0	0	13256	1363	47	4		4	RBMS1	2	161141660	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	328507	161141660	82057713	1228	69473											
TBR1	10716	broad.mit.edu	37	chr2	162273652	162273652	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgctgctctaggcgcaGccggggacaagtgcacctag	14	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162273652	A	A	162273652	1	1	61	0	1	0	0	0	0	0	0	0	15769	986	34	4		4	TBR1	2	162273652	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1131992	162273652	80925721	1229	69474											
TBR1	10716	broad.mit.edu	37	chr2	162275306	162275306	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggcgggctgcaggctgccTccgccggcccgggcgcgcag	18	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162275306	A	A	162275306	1	1	61	0	1	0	0	0	0	0	0	0	15769	1566	54	5		5	TBR1	2	162275306	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1654	162275306	80924067	1230	69475											
SLC4A10	57282	broad.mit.edu	37	chr2	162735742	162735742	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgaacagtagttgcgtttgtCaggttgtctccagctgtatt	11	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162735742	T	T	162735742	2	4	61	1	0	0	0	0	0	0	0	1	14765	813	29	4		4	SLC4A10	2	162735742	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	460436	162735742	80463631	1231	69476											
DPP4	1803	broad.mit.edu	37	chr2	162875432	162875432	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaactgaataaagccaTattctagtttcaaagacagc	8	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162875432	C	C	162875432	1	2	61	0	1	0	0	0	0	0	0	0	4769	1421	49	5		5	DPP4	2	162875432	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	139690	162875432	80323941	1232	69477											
KCNH7	90134	broad.mit.edu	37	chr2	163241388	163241388	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttctcttcaaagtgtctCttggaactctgataatgtct	6	8	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163241388	T	T	163241388	2	4	61	1	0	0	0	0	0	0	0	1	8107	912	32	4		4	KCNH7	2	163241388	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	365956	163241388	79957985	1233	69478											
FIGN	55137	broad.mit.edu	37	chr2	164466057	164466057	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattttttttttctaaagaAgttatcactgactgcaacca	4	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164466057	C	C	164466057	1	2	61	0	1	0	0	0	0	0	0	0	5948	87	3	5		5	FIGN	2	164466057	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1224669	164466057	78733316	1234	69479											
FIGN	55137	broad.mit.edu	37	chr2	164466754	164466754	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaataatgttttgcctgTcccccgaggtccaaataaaa	7	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164466754	C	C	164466754	3	2	61	1	0	0	0	0	1	0	0	0	5948	1667	58	5	695	5	FIGN	2	164466754	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	697	164466754	78732619	1235	69480											
COBLL1	22837	broad.mit.edu	37	chr2	165559819	165559819	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcattttggaagaaatcagAtttgttagctcacaattatc	7	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165559819	T	T	165559819	1	4	61	0	1	0	0	0	0	0	0	0	3686	348	12	5		5	COBLL1	2	165559819	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1093065	165559819	77639554	1236	69481											
SLC38A11	151258	broad.mit.edu	37	chr2	165802212	165802212	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccagagagggcccctccTtttatcaataaaacaaggga	9	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165802212	G	G	165802212	3	3	61	1	0	0	0	0	1	0	0	0	14717	1606	56	5	1099	5	SLC38A11	2	165802212	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	242393	165802212	77397161	1237	69482											
SCN3A	6328	broad.mit.edu	37	chr2	165948901	165948901	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaggttgatccgggacaaaActagggtcatgtatttgccc	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165948901	C	C	165948901	3	2	61	1	0	0	0	0	1	0	0	0	14031	43	2	5	1340	5	SCN3A	2	165948901	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	146689	165948901	77250472	1238	69483											
SCN3A	6328	broad.mit.edu	37	chr2	165969305	165969305	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgcataattatgtcattAttagtgaaagttttaataac	5	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165969305	G	G	165969305	1	3	61	0	1	0	0	0	0	0	0	0	14031	464	16	5		5	SCN3A	2	165969305	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	20404	165969305	77230068	1239	69484											
SCN3A	6328	broad.mit.edu	37	chr2	165986775	165986775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattagcatatttagtgtgGgccaggattttgccaacttg	10	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165986775	T	T	165986775	3	4	61	1	0	0	0	0	1	0	0	0	14031	1232	43	2	3453	2	SCN3A	2	165986775	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17470	165986775	77212598	1240	69485											
SCN3A	6328	broad.mit.edu	37	chr2	165994467	165994467	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccataaagagggtatttaaGacaatgcaaatagtgatggc	11	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165994467	A	A	165994467	2	1	61	1	0	0	0	0	0	0	0	1	14031	929	33	4		4	SCN3A	2	165994467	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7692	165994467	77204906	1241	69486											
SCN2A	6326	broad.mit.edu	37	chr2	166102052	166102052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaacacactatgtctcccCtggattgagcaaatgaggga	9	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166102052	A	A	166102052	1	1	61	0	1	0	0	0	0	0	0	0	14029	696	24	2		2	SCN2A	2	166102052	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	107585	166102052	77097321	1242	69487											
SCN2A	6326	broad.mit.edu	37	chr2	166164220	166164220	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagttatagaaatggcaaaaAaaagggtcaataatagaata	9	2	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166164220	C	C	166164220	1	2	61	0	1	0	0	0	0	0	0	0	14029	29	1	5		5	SCN2A	2	166164220	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	62168	166164220	77035153	1243	69488											
SCN2A	6326	broad.mit.edu	37	chr2	166183297	166183297	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttaaataacacctgttgtAggaatgctttgggctttgct	10	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166183297	T	T	166183297	1	4	61	0	1	0	0	0	0	0	0	0	14029	435	15	5		5	SCN2A	2	166183297	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19077	166183297	77016076	1244	69489											
CSRNP3	80034	broad.mit.edu	37	chr2	166532870	166532870	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaagccagcactcttacaCtggatgacatttctgatgat	8	9	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166532870	G	G	166532870	3	3	61	1	0	0	0	0	1	0	0	0	3999	564	20	4	467	4	CSRNP3	2	166532870	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	349573	166532870	76666503	1245	69490											
CSRNP3	80034	broad.mit.edu	37	chr2	166535163	166535163	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagttctgggcgtttatTtggtttgtaatagttccatg	11	4	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166535163	A	A	166535163	1	1	61	0	1	0	0	0	0	0	0	0	3999	1856	64	5		5	CSRNP3	2	166535163	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2293	166535163	76664210	1246	69491											
GALNT3	2591	broad.mit.edu	37	chr2	166606373	166606373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccttctggatgttgtgcCgaatttcatgttgagcagag	11	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166606373	A	A	166606373	3	1	61	1	0	0	0	0	1	0	0	0	6276	652	23	1	251	1	GALNT3	2	166606373	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	71210	166606373	76593000	1247	69492											
TTC21B	79809	broad.mit.edu	37	chr2	166797522	166797522	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaaagagacttgtgtcatCttttattacttaacctttgt	5	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166797522	G	G	166797522	1	3	61	0	1	0	0	0	0	0	0	0	16814	928	32	4		4	TTC21B	2	166797522	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	191149	166797522	76401851	1248	69493											
SCN1A	6323	broad.mit.edu	37	chr2	166901479	166901479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgataaaaattcctgagtcCattttctaattctccccctc	3	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166901479	A	A	166901479	1	1	61	0	1	0	0	0	0	0	0	0	14027	609	21	2		2	SCN1A	2	166901479	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	103957	166901479	76297894	1249	69494											
SCN1A	6323	broad.mit.edu	37	chr2	166904360	166904360	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctatgatattgcctagtcAgaaagatttggtatttcaaa	8	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166904360	T	T	166904360	1	4	61	0	1	0	0	0	0	0	0	0	14027	203	7	5		5	SCN1A	2	166904360	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2881	166904360	76295013	1250	69495											
SCN9A	6335	broad.mit.edu	37	chr2	167136847	167136847	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaaactatgagtacataAcacacaataagagacttacc	6	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167136847	C	C	167136847	1	2	61	0	1	0	0	0	0	0	0	0	14038	58	2	5		5	SCN9A	2	167136847	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	232487	167136847	76062526	1251	69496											
SCN7A	6332	broad.mit.edu	37	chr2	167297982	167297982	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaacctccatacagtccCacaaggtctctacccactct	4	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167297982	G	G	167297982	3	3	61	1	0	0	0	0	1	0	0	0	14036	595	21	4	3015	4	SCN7A	2	167297982	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	161135	167297982	75901391	1252	69497											
SCN7A	6332	broad.mit.edu	37	chr2	167327161	167327161	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttttaaaattctcaaagTtcttgcagtttgaagcgttg	7	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167327161	G	G	167327161	3	3	61	1	0	0	0	0	1	0	0	0	14036	1725	60	5	4500	5	SCN7A	2	167327161	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29179	167327161	75872212	1253	69498											
SCN7A	6332	broad.mit.edu	37	chr2	167330414	167330414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggtagcttatagtcaaGgaataatagttaataaataa	7	2	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167330414	T	T	167330414	1	4	61	0	1	0	0	0	0	0	0	0	14036	1015	35	2		2	SCN7A	2	167330414	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3253	167330414	75868959	1254	69499											
XIRP2	129446	broad.mit.edu	37	chr2	167883360	167883361	+	Intron	INS	-	T	T													ttggcccccactcttctgacINSttgtagagtttctgccgaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167883361	T	T	167883360	6	5	61	0	1	1	1	0	0	0	0	0	17557	580	20	0		0	XIRP2	2	167883360	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	552946	167883360	75316013	1255	69500											
XIRP2	129446	broad.mit.edu	37	chr2	168103170	168103170	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagaagctggagctttggaTtatctgaaacaactccacac	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168103170	G	G	168103170	3	3	61	1	0	0	0	0	1	0	0	0	17557	1490	52	5	5298	5	XIRP2	2	168103170	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	219810	168103170	75096203	1256	69501											
STK39	27347	broad.mit.edu	37	chr2	168996754	168996754	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattagaaaacagattccgtCcaatcacatttcaaccccga	4	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168996754	T	T	168996754	1	4	61	0	1	0	0	0	0	0	0	0	15423	870	30	4		4	STK39	2	168996754	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	893584	168996754	74202619	1257	69502											
LASS6	253782	broad.mit.edu	37	chr2	169622886	169622886	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcctctctctctatccctGtcctgagtgcctcttgcctg	6	18	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169622886	A	A	169622886	1	1	61	0	1	0	0	0	0	0	0	0	8715	1392	48	4		4	LASS6	2	169622886	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	626132	169622886	73576487	1258	69503											
SPC25	57405	broad.mit.edu	37	chr2	169732593	169732593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaacttaccataaatttttCgaatttctagtccaagtcga	4	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169732593	A	A	169732593	3	1	61	1	0	0	0	0	1	0	0	0	15138	884	31	3	246	3	SPC25	2	169732593	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	109707	169732593	73466780	1259	69504											
ABCB11	8647	broad.mit.edu	37	chr2	169791965	169791965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaagagtcttaggaataCaagggcagaaataactcctt	9	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169791965	A	A	169791965	1	1	61	0	1	0	0	0	0	0	0	0	42	493	17	3		3	ABCB11	2	169791965	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	59372	169791965	73407408	1260	69505											
ABCB11	8647	broad.mit.edu	37	chr2	169826478	169826478	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcccatccctcccacccCacaaggagctgcctttcctg	5	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169826478	T	T	169826478	1	4	61	0	1	0	0	0	0	0	0	0	42	609	21	4		4	ABCB11	2	169826478	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34513	169826478	73372895	1261	69506											
LRP2	4036	broad.mit.edu	37	chr2	169985138	169985138	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatatatgtgcaaaagTgtgtttctaattattcccta	5	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169985138	A	A	169985138	1	1	61	0	1	0	0	0	0	0	0	0	9043	1711	59	5		5	LRP2	2	169985138	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	158660	169985138	73214235	1262	69507											
LRP2	4036	broad.mit.edu	37	chr2	170053218	170053218	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaatcagcagcttccgtatCctgatcagctccccacacag	6	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170053218	A	A	170053218	1	1	61	0	1	0	0	0	0	0	0	0	9043	870	30	3		3	LRP2	2	170053218	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	68080	170053218	73146155	1263	69508											
LRP2	4036	broad.mit.edu	37	chr2	170063602	170063602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaatctttggtctctgccCatagtcagcccagaagaggt	9	12	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170063602	A	A	170063602	3	1	61	1	0	0	0	0	1	0	0	0	9043	594	21	2	7503	2	LRP2	2	170063602	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10384	170063602	73135771	1264	69509											
LRP2	4036	broad.mit.edu	37	chr2	170097528	170097528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactcatctgtcccattggGgcagtcaaagatgccatcac	10	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170097528	T	T	170097528	3	4	61	1	0	0	0	0	1	0	0	0	9043	1232	43	2	10172	2	LRP2	2	170097528	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33926	170097528	73101845	1265	69510											
SSB	6741	broad.mit.edu	37	chr2	170663405	170663405	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcataaagcatttaaggtAtgataatacagactttttct	6	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170663405	G	G	170663405	1	3	61	0	1	0	0	0	0	0	0	0	15296	464	16	5		5	SSB	2	170663405	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	565877	170663405	72535968	1266	69511											
MYO3B	140469	broad.mit.edu	37	chr2	171034822	171034822	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagttgcagttattttccttCcagctttcttctgtgcttgc	8	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171034822	A	A	171034822	1	1	61	0	1	0	0	0	0	0	0	0	10171	870	30	3		3	MYO3B	2	171034822	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	371417	171034822	72164551	1267	69512											
MYO3B	140469	broad.mit.edu	37	chr2	171230766	171230766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcgaggttagtagaagaGtggccttgggatctttgtgg	16	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171230766	T	T	171230766	1	4	61	0	1	0	0	0	0	0	0	0	10171	1044	36	3		3	MYO3B	2	171230766	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	195944	171230766	71968607	1268	69513											
TLK1	9874	broad.mit.edu	37	chr2	171871453	171871453	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttctgcctggatttctgcCtcttcctgaaaatgaagaga	9	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171871453	T	T	171871453	2	4	61	1	0	0	0	0	0	0	0	1	16066	680	24	4		4	TLK1	2	171871453	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	640687	171871453	71327920	1269	69514											
SLC25A12	8604	broad.mit.edu	37	chr2	172749818	172749818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgcttcactagagaccaCacaatctcttcagattagag	6	10	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172749818	A	A	172749818	1	1	61	0	1	0	0	0	0	0	0	0	14588	493	17	3		3	SLC25A12	2	172749818	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	878365	172749818	70449555	1270	69515											
RAPGEF4	11069	broad.mit.edu	37	chr2	173729103	173729103	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgaggggaaagaacatTgggcttcatggctccctgga	13	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173729103	A	A	173729103	1	1	61	0	1	0	0	0	0	0	0	0	13154	1827	63	5		5	RAPGEF4	2	173729103	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	979285	173729103	69470270	1271	69516											
RAPGEF4	11069	broad.mit.edu	37	chr2	173898594	173898594	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaacccatgatacatatctAgatattgaatctgacatatg	6	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173898594	G	G	173898594	1	3	61	0	1	0	0	0	0	0	0	0	13154	435	15	5		5	RAPGEF4	2	173898594	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	169491	173898594	69300779	1272	69517											
ZAK	51776	broad.mit.edu	37	chr2	174128549	174128549	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaacctcaggatgaagTgaaagcagtccaacttgcca	8	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174128549	G	G	174128549	3	3	61	1	0	0	0	0	1	0	0	0	17639	1696	59	5	2083	5	ZAK	2	174128549	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	229955	174128549	69070824	1273	69518											
CIR1	9541	broad.mit.edu	37	chr2	175252567	175252567	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaaattaaacaaactttgCttttcttgtataataaaata	2	4	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175252567	T	T	175252567	1	4	61	0	1	0	0	0	0	0	0	0	3463	812	28	4		4	CIR1	2	175252567	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1124018	175252567	67946806	1274	69519											
CHRNA1	1134	broad.mit.edu	37	chr2	175618462	175618462	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttgctcaggtctggctggtCgctttcctgagaaaggaagt	14	8	2	1	rs145421881		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175618462	G	G	175618462	3	3	61	1	0	0	0	0	1	0	0	0	3412	884	31	4	842	4	CHRNA1	2	175618462	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	365895	175618462	67580911	1275	69520											
HOXD3	3232	broad.mit.edu	37	chr2	177036370	177036370	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgctacttgtgccggccgCgccgcgtggagatggccaac	14	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177036370	T	T	177036370	3	4	61	1	0	0	0	0	1	0	0	0	7390	768	27	4	673	4	HOXD3	2	177036370	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1417908	177036370	66163003	1276	69521											
PDE11A	50940	broad.mit.edu	37	chr2	178684815	178684815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgcttatgaaattataCgagagtgtgagacatagttt	10	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178684815	A	A	178684815	1	1	61	0	1	0	0	0	0	0	0	0	11725	551	19	3		3	PDE11A	2	178684815	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1648445	178684815	64514558	1277	69522											
PDE11A	50940	broad.mit.edu	37	chr2	178704947	178704947	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagtgcgacaactgaaacTtaggattgcaaccagagggg	12	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178704947	G	G	178704947	1	3	61	0	1	0	0	0	0	0	0	0	11725	1624	56	5		5	PDE11A	2	178704947	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	20132	178704947	64494426	1278	69523											
PDE11A	50940	broad.mit.edu	37	chr2	178705137	178705137	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcaccaaggtaggcaggaAgaaaagagagaaacgtaagt	14	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178705137	C	C	178705137	1	2	61	0	1	0	0	0	0	0	0	0	11725	87	3	5		5	PDE11A	2	178705137	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	190	178705137	64494236	1279	69524											
PDE11A	50940	broad.mit.edu	37	chr2	178939678	178939678	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgataataagatgtgtgttGgtgtggccacattgccattt	11	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178939678	T	T	178939678	1	4	61	0	1	0	0	0	0	0	0	0	11725	1363	47	2		2	PDE11A	2	178939678	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	234541	178939678	64259695	1280	69525											
OSBPL6	114880	broad.mit.edu	37	chr2	179197327	179197327	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagtacagaaacatcaaatCatatatcctttcagcctatt	3	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179197327	T	T	179197327	1	4	61	0	1	0	0	0	0	0	0	0	11375	841	29	4		4	OSBPL6	2	179197327	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	257649	179197327	64002046	1281	69526											
DFNB59	494513	broad.mit.edu	37	chr2	179323189	179323189	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcatttctccaaaaagctatCcttacatgttatgatcctta	3	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179323189	T	T	179323189	1	4	61	0	1	0	0	0	0	0	0	0	4496	870	30	4		4	DFNB59	2	179323189	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	125862	179323189	63876184	1282	69527											
TTN	7273	broad.mit.edu	37	chr2	179443955	179443955	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagttgtgttaaccgcagatGactcaacactgactctagtg	10	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179443955	C	C	179443955	4	2	61	1	0	0	0	0	0	1	0	0	16861	1294	45	4	40349	4	TTN	2	179443955	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	120766	179443955	63755418	1283	69528											
TTN	7273	broad.mit.edu	37	chr2	179454551	179454551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatagtattcattgttgGctaaaaggttggccttgatt	11	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179454551	T	T	179454551	3	4	61	1	0	0	0	0	1	0	0	0	16861	1203	42	3	46314	3	TTN	2	179454551	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10596	179454551	63744822	1284	69529											
TTN	7273	broad.mit.edu	37	chr2	179467201	179467201	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtaccttcttcttgcatttCtacaatgtatcctttgattg	5	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179467201	T	T	179467201	3	4	61	1	0	0	0	0	1	0	0	0	16861	922	32	4	53085	4	TTN	2	179467201	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12650	179467201	63732172	1285	69530											
TTN	7273	broad.mit.edu	37	chr2	179471967	179471967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttcctccatcatcttctgGatcagaccagttaagtagac	6	12	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179471967	T	T	179471967	3	4	61	1	0	0	0	0	1	0	0	0	16861	1174	41	3	54671	3	TTN	2	179471967	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4766	179471967	63727406	1286	69531											
TTN	7273	broad.mit.edu	37	chr2	179472330	179472330	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtacagggcgaccagtcacCacagctggaattctaagagt	12	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179472330	T	T	179472330	2	4	61	1	0	0	0	0	0	0	0	1	16861	581	21	4		4	TTN	2	179472330	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	363	179472330	63727043	1287	69532											
TTN	7273	broad.mit.edu	37	chr2	179473550	179473550	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatgatttcactgccaccAtcatcaaggggtggttccca	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179473550	G	G	179473550	2	3	61	1	0	0	0	0	0	0	0	1	16861	214	8	5		5	TTN	2	179473550	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1220	179473550	63725823	1288	69533											
TTN	7273	broad.mit.edu	37	chr2	179500193	179500193	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtcagctttgcagggtatCtttttccttcaatttccact	7	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179500193	G	G	179500193	3	3	61	1	0	0	0	0	1	0	0	0	16861	913	32	4	66379	4	TTN	2	179500193	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26643	179500193	63699180	1289	69534											
TTN	7273	broad.mit.edu	37	chr2	179537183	179537183	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcacaaggactttcttttcTgggactttctttggtacttc	9	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179537183	A	A	179537183	2	1	61	1	0	0	0	0	0	0	0	1	16861	1567	55	5		5	TTN	2	179537183	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36990	179537183	63662190	1290	69535											
TTN	7273	broad.mit.edu	37	chr2	179542669	179542669	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagatatttattcaagggtAcaaacatcacttttatgtaa	5	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179542669	G	G	179542669	1	3	61	0	1	0	0	0	0	0	0	0	16861	406	14	5		5	TTN	2	179542669	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5486	179542669	63656704	1291	69536											
TTN	7273	broad.mit.edu	37	chr2	179576158	179576158	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatatatacaaacgcacgtaTatatgcaatttctattaaaa	3	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179576158	C	C	179576158	1	2	61	0	1	0	0	0	0	0	0	0	16861	1421	49	5		5	TTN	2	179576158	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	33489	179576158	63623215	1292	69537											
TTN	7273	broad.mit.edu	37	chr2	179583275	179583275	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcctcgagaactatgggGcttcctgtctcaacactgaa	11	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179583275	A	A	179583275	2	1	61	1	0	0	0	0	0	0	0	1	16861	1194	42	4		4	TTN	2	179583275	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7117	179583275	63616098	1293	69538											
TTN	7273	broad.mit.edu	37	chr2	179584652	179584652	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggataagaggaatatttgagGaaaatgatcatggatcaagt	12	2	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179584652	T	T	179584652	1	4	61	0	1	0	0	0	0	0	0	0	16861	1189	41	3		3	TTN	2	179584652	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1377	179584652	63614721	1294	69539											
TTN	7273	broad.mit.edu	37	chr2	179590626	179590626	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtttttggatgcaatcTtgtatttcttgctgcttctg	10	6	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179590626	C	C	179590626	3	2	61	1	0	0	0	0	1	0	0	0	16861	1609	56	5	84278	5	TTN	2	179590626	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5974	179590626	63608747	1295	69540											
TTN	7273	broad.mit.edu	37	chr2	179592126	179592126	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcaggaaagaggagagtatCagggaacagaaataaataac	12	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179592126	A	A	179592126	1	1	61	0	1	0	0	0	0	0	0	0	16861	841	29	3		3	TTN	2	179592126	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1500	179592126	63607247	1296	69541											
TTN	7273	broad.mit.edu	37	chr2	179611074	179611074	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggatctacaaaattaaaTggaagaacatctagactcac	6	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179611074	A	A	179611074	2	1	61	1	0	0	0	0	0	0	0	1	16861	1451	51	5		5	TTN	2	179611074	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18948	179611074	63588299	1297	69542											
TTN	7273	broad.mit.edu	37	chr2	179621360	179621360	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggaactttgagatacacTttcaaaaacctgcacttcat	6	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179621360	C	C	179621360	3	2	61	1	0	0	0	0	1	0	0	0	16861	1609	56	5	100413	5	TTN	2	179621360	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10286	179621360	63578013	1298	69543											
TTN	7273	broad.mit.edu	37	chr2	179638834	179638834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtaggatagcaatggggCgggctgtgaaatatggggag	18	4	0	1	rs75031300	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179638834	A	A	179638834	3	1	61	1	0	0	0	0	1	0	0	0	16861	768	27	3	104255	3	TTN	2	179638834	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17474	179638834	63560539	1299	69544											
TTN	7273	broad.mit.edu	37	chr2	179640518	179640519	+	Missense_Mutation	DNP	CA	TC	TC													gaggagttcctcataggattCatccttctttcgagacttga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	179640519	TC	TC	179640518	3	4	61	1	0	0	0	0	1	0	0	0	16861	835	29	4	105255	4	TTN	2	179640518	Missense_Mutation	DNP	CA	TCGA-17-Z031-01A-01W-0746-08	1684	179640518	63558855	1300	69545											
TTN	7273	broad.mit.edu	37	chr2	179655575	179655575	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcagtttcctgtcttatctGatgtttagagtaaaataaag	7	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179655575	T	T	179655575	1	4	61	0	1	0	0	0	0	0	0	0	16861	1305	45	3		3	TTN	2	179655575	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15057	179655575	63543798	1301	69546											
CCDC141	285025	broad.mit.edu	37	chr2	179710512	179710512	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcatgagccaggaaagtTggagaacagtgccatacact	12	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179710512	C	C	179710512	1	2	61	0	1	0	0	0	0	0	0	0	2801	1827	63	5		5	CCDC141	2	179710512	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	54937	179710512	63488861	1302	69547											
SESTD1	91404	broad.mit.edu	37	chr2	180036820	180036820	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctatttttaaagatataatgGactttaaaaaaagagattac	5	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180036820	C	C	180036820	1	2	61	0	1	0	0	0	0	0	0	0	14240	1189	41	4		4	SESTD1	2	180036820	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	326308	180036820	63162553	1303	69548											
SESTD1	91404	broad.mit.edu	37	chr2	180047903	180047903	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaaatgaggccactccgtCtgtcttttcctcctattaaa	5	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180047903	G	G	180047903	3	3	61	1	0	0	0	0	1	0	0	0	14240	913	32	4	2086	4	SESTD1	2	180047903	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11083	180047903	63151470	1304	69549											
ZNF385B	151126	broad.mit.edu	37	chr2	180424073	180424073	+	Intron	DEL	G	-	-													tctctagtgggtatttaacaGattgggccaatagttggcct					rs55819846		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180424073	-	-	180424073	6	5	61	0	1	1	0	1	0	0	0	0	18003	957	33	0		0	ZNF385B	2	180424073	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	376170	180424073	62775300	1305	69550											
ITGA4	3676	broad.mit.edu	37	chr2	182323104	182323104	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccccatgtggaccccaccAtagggcaagtcctggaaaga	10	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182323104	G	G	182323104	1	3	61	0	1	0	0	0	0	0	0	0	7948	232	8	5		5	ITGA4	2	182323104	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1899031	182323104	60876269	1306	69551											
ITGA4	3676	broad.mit.edu	37	chr2	182323141	182323141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattcacgttgcctgttaCttctggtttaaagagcataa	8	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182323141	A	A	182323141	1	1	61	0	1	0	0	0	0	0	0	0	7948	580	20	3		3	ITGA4	2	182323141	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37	182323141	60876232	1307	69552											
ITGA4	3676	broad.mit.edu	37	chr2	182339614	182339614	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacagaaaaatactggggaTgagtgcacagttttctcttc	9	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182339614	A	A	182339614	1	1	61	0	1	0	0	0	0	0	0	0	7948	1479	51	5		5	ITGA4	2	182339614	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16473	182339614	60859759	1308	69553											
ITGA4	3676	broad.mit.edu	37	chr2	182388301	182388301	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttttgttcactatcatgaaTatttttttctattcttccct	2	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182388301	A	A	182388301	1	1	61	0	1	0	0	0	0	0	0	0	7948	1421	49	5		5	ITGA4	2	182388301	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	48687	182388301	60811072	1309	69554											
PPP1R1C	151242	broad.mit.edu	37	chr2	182850924	182850924	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcagcagagcaggtatgTgaaattgcatggagaaccat	13	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182850924	C	C	182850924	1	2	61	0	1	0	0	0	0	0	0	0	12470	1711	59	5		5	PPP1R1C	2	182850924	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	462623	182850924	60348449	1310	69555											
PDE1A	5136	broad.mit.edu	37	chr2	183356119	183356119	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttaagcttcttggggggAcatgggcacatgggaggagc	16	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183356119	G	G	183356119	1	3	61	0	1	0	0	0	0	0	0	0	11727	290	10	5		5	PDE1A	2	183356119	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	505195	183356119	59843254	1311	69556											
FRZB	2487	broad.mit.edu	37	chr2	183699583	183699583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatttcgggatttagttgCgtgcttgccgggggttcgag	16	6	0	0	rs138459633	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183699583	A	A	183699583	3	1	61	1	0	0	0	0	1	0	0	0	6125	768	27	3	10	3	FRZB	2	183699583	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	343464	183699583	59499790	1312	69557											
DUSP19	142679	broad.mit.edu	37	chr2	183948215	183948215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatatttgtgttcaaggtGgtatcatttatttcttctag	7	4	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183948215	T	T	183948215	1	4	61	0	1	0	0	0	0	0	0	0	4858	1363	47	2		2	DUSP19	2	183948215	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	248632	183948215	59251158	1313	69558											
ZNF804A	91752	broad.mit.edu	37	chr2	185802931	185802931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaataccctgcttgaacaCaaagaaagaagtgagaatat	8	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185802931	A	A	185802931	3	1	61	1	0	0	0	0	1	0	0	0	18299	477	17	3	2822	3	ZNF804A	2	185802931	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1854716	185802931	57396442	1314	69559											
ZNF804A	91752	broad.mit.edu	37	chr2	185802946	185802946	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacacaaagaaagaagtgaGaatataaatcttaatgaaaa	7	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185802946	T	T	185802946	3	4	61	1	0	0	0	0	1	0	0	0	18299	933	33	3	2837	3	ZNF804A	2	185802946	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15	185802946	57396427	1315	69560											
ZNF804A	91752	broad.mit.edu	37	chr2	185803677	185803678	+	Missense_Mutation	DNP	CA	AT	AT													tcctagccatctggctttccCatctttaccccatgcactct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	185803678	AT	AT	185803677	3	1	61	1	0	0	0	0	1	0	0	0	18299	594	21	2	3568	2	ZNF804A	2	185803677	Missense_Mutation	DNP	CA	TCGA-17-Z031-01A-01W-0746-08	731	185803677	57395696	1316	69561											
ITGAV	3685	broad.mit.edu	37	chr2	187455108	187455108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcgcctcggtccccgcGgcctcccgcttcttctctcg	11	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187455108	T	T	187455108	3	4	61	1	0	0	0	0	1	0	0	0	7958	1116	39	1	45	1	ITGAV	2	187455108	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1651431	187455108	55744265	1317	69562											
CALCRL	10203	broad.mit.edu	37	chr2	188211006	188211006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacagtcatgactataacCtggaccatcactgattgttg	9	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188211006	A	A	188211006	3	1	61	1	0	0	0	0	1	0	0	0	2606	681	24	2	98	2	CALCRL	2	188211006	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	755898	188211006	54988367	1318	69563											
CALCRL	10203	broad.mit.edu	37	chr2	188280235	188280235	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taataatattgaaatgttatAtaaacttttgtggtatctaa	5	2	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188280235	T	T	188280235	1	4	61	0	1	0	0	0	0	0	0	0	2606	464	16	5		5	CALCRL	2	188280235	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	69229	188280235	54919138	1319	69564											
CALCRL	10203	broad.mit.edu	37	chr2	188280419	188280419	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcaccaggttgtctcctcCgacttcaacagtgacaccca	8	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188280419	T	T	188280419	1	4	61	0	1	0	0	0	0	0	0	0	2606	667	23	4		4	CALCRL	2	188280419	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	184	188280419	54918954	1320	69565											
DIRC1	116093	broad.mit.edu	37	chr2	189628869	189628869	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccccgcttccaagcccaGtactgtcattatctaatttc	5	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189628869	A	A	189628869	1	1	61	0	1	0	0	0	0	0	0	0	4573	1044	36	4		4	DIRC1	2	189628869	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1348450	189628869	53570504	1321	69566											
COL3A1	1281	broad.mit.edu	37	chr2	189856420	189856420	+	Missense_Mutation	SNP	G	T	T													aagaggggctcctggtgagcGaggacggccaggacttcctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189856420	T	T	189856420	3	4	61	1	0	0	0	0	1	0	0	0	3720	1058	37	3	973	3	COL3A1	2	189856420	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	227551	189856420	53342953	1322	69567	320	2									
COL3A1	1281	broad.mit.edu	37	chr2	189856422	189856422	+	Nonsense_Mutation	SNP	G	T	T													gaggggctcctggtgagcgaGgacggccaggacttcctggg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189856422	T	T	189856422	4	4	61	1	0	0	0	0	0	1	0	0	3720	1001	35	2	975	2	COL3A1	2	189856422	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2	189856422	53342951	1323	69568	320	2									
COL3A1	1281	broad.mit.edu	37	chr2	189866155	189866155	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctattggtcctcctggcccAgctggccagcctggagataa	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189866155	C	C	189866155	2	2	61	1	0	0	0	0	0	0	0	1	3720	175	7	5		5	COL3A1	2	189866155	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9733	189866155	53333218	1324	69569											
COL3A1	1281	broad.mit.edu	37	chr2	189866206	189866206	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatactacctggatataaaaAgaaaatgtctctctcttttg	5	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189866206	C	C	189866206	1	2	61	0	1	0	0	0	0	0	0	0	3720	87	3	5		5	COL3A1	2	189866206	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	51	189866206	53333167	1325	69570											
COL3A1	1281	broad.mit.edu	37	chr2	189868724	189868724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggtaacccaggaccccCaggtcccagcggttctccag	12	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189868724	A	A	189868724	3	1	61	1	0	0	0	0	1	0	0	0	3720	594	21	2	2832	2	COL3A1	2	189868724	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2518	189868724	53330649	1326	69571											
COL5A2	1290	broad.mit.edu	37	chr2	189898752	189898752	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagttcttgtgaatggcggtGgtcattgatggtggtgctca	15	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189898752	C	C	189898752	1	2	61	0	1	0	0	0	0	0	0	0	3729	1363	47	4		4	COL5A2	2	189898752	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30028	189898752	53300621	1327	69572											
COL5A2	1290	broad.mit.edu	37	chr2	189914108	189914108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctacaggaccattggagcCtgggggccccacaggtccag	13	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189914108	A	A	189914108	3	1	61	1	0	0	0	0	1	0	0	0	3729	681	24	2	1431	2	COL5A2	2	189914108	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15356	189914108	53285265	1328	69573											
COL5A2	1290	broad.mit.edu	37	chr2	189926206	189926206	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaattgtagaatttcaaatCttctgaccatatcttttttt	3	6	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189926206	T	T	189926206	1	4	61	0	1	0	0	0	0	0	0	0	3729	928	32	4		4	COL5A2	2	189926206	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12098	189926206	53273167	1329	69574											
COL5A2	1290	broad.mit.edu	37	chr2	189931133	189931133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccctttctcccactggccCtggaggaccaactgttcctg	8	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189931133	A	A	189931133	3	1	61	1	0	0	0	0	1	0	0	0	3729	681	24	2	3081	2	COL5A2	2	189931133	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4927	189931133	53268240	1330	69575											
COL5A2	1290	broad.mit.edu	37	chr2	189944597	189944597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacctaaccatttgtttGtagccctctctcctgctgaa	5	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189944597	T	T	189944597	1	4	61	0	1	0	0	0	0	0	0	0	3729	1392	48	3		3	COL5A2	2	189944597	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13464	189944597	53254776	1331	69576											
WDR75	84128	broad.mit.edu	37	chr2	190340070	190340070	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagaagacattatacatcAgttgtcaaaatctgaagaaa	8	5	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190340070	G	G	190340070	3	3	61	1	0	0	0	0	1	0	0	0	17452	188	7	5	2502	5	WDR75	2	190340070	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	395473	190340070	52859303	1332	69577											
SLC40A1	30061	broad.mit.edu	37	chr2	190439990	190439990	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgctgtcaaaaggaggctGtttccatagagctctaccag	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190439990	A	A	190439990	2	1	61	1	0	0	0	0	0	0	0	1	14742	1368	48	4		4	SLC40A1	2	190439990	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	99920	190439990	52759383	1333	69578											
OSGEPL1	64172	broad.mit.edu	37	chr2	190619989	190619989	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actaatgccaacagacagtgAcctccagaaatcaaaagaac	6	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190619989	T	T	190619989	2	4	61	1	0	0	0	0	0	0	0	1	11382	262	10	5		5	OSGEPL1	2	190619989	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	179999	190619989	52579384	1334	69579											
HIBCH	26275	broad.mit.edu	37	chr2	191155147	191155147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataccaacagcattattcagCatatattcttctctgaagaa	4	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191155147	A	A	191155147	3	1	61	1	0	0	0	0	1	0	0	0	7167	710	25	3	831	3	HIBCH	2	191155147	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	535158	191155147	52044226	1335	69580											
STAT4	6775	broad.mit.edu	37	chr2	191931270	191931270	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaaagagatcagatttagaGttctctctattcctgaaagt	8	6	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191931270	C	C	191931270	1	2	61	0	1	0	0	0	0	0	0	0	15385	1044	36	4		4	STAT4	2	191931270	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	776123	191931270	51268103	1336	69581											
MYO1B	4430	broad.mit.edu	37	chr2	192273773	192273773	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaacccaacacaggtgCaaaaatacttcttggaaatg	7	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192273773	T	T	192273773	4	4	61	1	0	0	0	0	0	1	0	0	10163	711	25	4	2733	4	MYO1B	2	192273773	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	342503	192273773	50925600	1337	69582											
OBFC2A	64859	broad.mit.edu	37	chr2	192543284	192543284	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccgggagggtgggaagCtttgaccccgccctgcccac	14	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192543284	G	G	192543284	1	3	61	0	1	0	0	0	0	0	0	0	10903	812	28	4		4	OBFC2A	2	192543284	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	269511	192543284	50656089	1338	69583											
TMEFF2	23671	broad.mit.edu	37	chr2	192862884	192862884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaaggctagcacatgttAgaagtcttgcaagcttcact	10	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192862884	G	G	192862884	1	3	61	0	1	0	0	0	0	0	0	0	16137	435	15	5		5	TMEFF2	2	192862884	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	319600	192862884	50336489	1339	69584											
DNAH7	56171	broad.mit.edu	37	chr2	196699047	196699047	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatccatttattagcctgacTttgaggatctatcatcagag	8	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196699047	G	G	196699047	3	3	61	1	0	0	0	0	1	0	0	0	4646	1609	56	5	3163	5	DNAH7	2	196699047	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3836163	196699047	46500326	1340	69585											
DNAH7	56171	broad.mit.edu	37	chr2	196722071	196722071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtgaagacagaccataCcagctggatttctttttatc	8	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196722071	A	A	196722071	1	1	61	0	1	0	0	0	0	0	0	0	4646	522	18	3		3	DNAH7	2	196722071	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	23024	196722071	46477302	1341	69586											
DNAH7	56171	broad.mit.edu	37	chr2	196729269	196729269	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccattcagtagtatcataCcccttagagatttcaacttg	6	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196729269	A	A	196729269	2	1	61	1	0	0	0	0	0	0	0	1	4646	494	18	3		3	DNAH7	2	196729269	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7198	196729269	46470104	1342	69587											
DNAH7	56171	broad.mit.edu	37	chr2	196749218	196749218	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttatggtaaatagtgatgAtgaaggtggccacagggcca	13	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196749218	G	G	196749218	1	3	61	0	1	0	0	0	0	0	0	0	4646	348	12	5		5	DNAH7	2	196749218	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19949	196749218	46450155	1343	69588											
DNAH7	56171	broad.mit.edu	37	chr2	196787589	196787589	+	Intron	DEL	T	-	-													caattgatcaattagaggaaTttttttttttttctgagaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196787589	-	-	196787589	6	5	61	0	1	1	0	1	0	0	0	0	4646	1508	52	0		0	DNAH7	2	196787589	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	38371	196787589	46411784	1344	69589											
DNAH7	56171	broad.mit.edu	37	chr2	196791236	196791236	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtctgtccaggccaatcccTtacccagttaattcgttcat	6	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196791236	A	A	196791236	3	1	61	1	0	0	0	0	1	0	0	0	4646	1608	56	5	8724	5	DNAH7	2	196791236	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3647	196791236	46408137	1345	69590											
DNAH7	56171	broad.mit.edu	37	chr2	196852571	196852571	+	Intron	SNP	C	T	T													gaagctcaataaatatttttCctgttgatgataatgttcta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196852571	T	T	196852571	1	4	61	0	1	0	0	0	0	0	0	0	4646	870	30	4		4	DNAH7	2	196852571	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61335	196852571	46346802	1346	69591	321	2									
DNAH7	56171	broad.mit.edu	37	chr2	196852575	196852575	+	Intron	SNP	T	C	C													ctcaataaatatttttcctgTtgatgataatgttctaatta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196852575	C	C	196852575	1	2	61	0	1	0	0	0	0	0	0	0	4646	1740	60	5		5	DNAH7	2	196852575	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4	196852575	46346798	1347	69592	321	2									
DNAH7	56171	broad.mit.edu	37	chr2	196874831	196874831	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctttccttccttccttcCtccatccatctctccctccc	0	22	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196874831	T	T	196874831	1	4	61	0	1	0	0	0	0	0	0	0	4646	696	24	4		4	DNAH7	2	196874831	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22256	196874831	46324542	1348	69593											
DNAH7	56171	broad.mit.edu	37	chr2	196917862	196917862	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacagagagggaaggagtGgaaaagtgctaggtagatgg	19	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196917862	A	A	196917862	1	1	61	0	1	0	0	0	0	0	0	0	4646	1363	47	4		4	DNAH7	2	196917862	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43031	196917862	46281511	1349	69594											
HECW2	57520	broad.mit.edu	37	chr2	197208539	197208539	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattataacctttctctccGtagcaggaagattaacataa	5	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197208539	A	A	197208539	1	1	61	0	1	0	0	0	0	0	0	0	7110	1160	40	4		4	HECW2	2	197208539	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	290677	197208539	45990834	1350	69595											
HECW2	57520	broad.mit.edu	37	chr2	197297907	197297907	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccacctcctctttaatgtCccagaagataatgaggttct	7	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197297907	T	T	197297907	3	4	61	1	0	0	0	0	1	0	0	0	7110	855	30	4	4589	4	HECW2	2	197297907	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	89368	197297907	45901466	1351	69596											
CCDC150	284992	broad.mit.edu	37	chr2	197504376	197504376	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttcccgacatgccctgccAcgggtgcgcctgcgtaccgg	13	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197504376	T	T	197504376	1	4	61	0	1	0	0	0	0	0	0	0	2811	174	6	5		5	CCDC150	2	197504376	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	206469	197504376	45694997	1352	69597											
CCDC150	284992	broad.mit.edu	37	chr2	197578192	197578192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacgtcatcagttggtttgCctagtgttattccaaactct	8	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197578192	T	T	197578192	1	4	61	0	1	0	0	0	0	0	0	0	2811	754	26	4		4	CCDC150	2	197578192	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	73816	197578192	45621181	1353	69598											
ANKRD44	91526	broad.mit.edu	37	chr2	197990268	197990268	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcactgcctgcagatgatctGagccaaattaacatgaaatc	7	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197990268	C	C	197990268	1	2	61	0	1	0	0	0	0	0	0	0	672	1305	45	4		4	ANKRD44	2	197990268	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	412076	197990268	45209105	1354	69599											
HSPD1	3329	broad.mit.edu	37	chr2	198358977	198358977	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcagtgtttttccatcctAtgaaaagtcaaagaattagg	7	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198358977	T	T	198358977	1	4	61	0	1	0	0	0	0	0	0	0	7498	464	16	5		5	HSPD1	2	198358977	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	368709	198358977	44840396	1355	69600											
MARS2	92935	broad.mit.edu	37	chr2	198570940	198570940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggcattccggtgcccgggGatgattcgcagaccatctat	14	11	1	2	rs145093633	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198570940	T	T	198570940	3	4	61	1	0	0	0	0	1	0	0	0	9409	1174	41	3	813	3	MARS2	2	198570940	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	211963	198570940	44628433	1356	69601											
BOLL	66037	broad.mit.edu	37	chr2	198636675	198636675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttgaagttgttagataCattgttccagctgctggcat	10	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198636675	A	A	198636675	3	1	61	1	0	0	0	0	1	0	0	0	1495	478	17	3	491	3	BOLL	2	198636675	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	65735	198636675	44562698	1357	69602											
PLCL1	5334	broad.mit.edu	37	chr2	198838993	198838993	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagatatcagacaggcagcTtgaattgctatggaaagtcc	10	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198838993	C	C	198838993	1	2	61	0	1	0	0	0	0	0	0	0	12134	1624	56	5		5	PLCL1	2	198838993	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	202318	198838993	44360380	1358	69603											
PLCL1	5334	broad.mit.edu	37	chr2	198841299	198841299	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcctgcctcagcctcctgAgtagctgggattacaggtgt	11	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198841299	C	C	198841299	1	2	61	0	1	0	0	0	0	0	0	0	12134	319	11	5		5	PLCL1	2	198841299	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2306	198841299	44358074	1359	69604											
PLCL1	5334	broad.mit.edu	37	chr2	198949322	198949322	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagacatcataaggagatacGaactttctgaagagggacgt	11	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198949322	A	A	198949322	3	1	61	1	0	0	0	0	1	0	0	0	12134	1059	37	4	1087	4	PLCL1	2	198949322	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	108023	198949322	44250051	1360	69605											
PLCL1	5334	broad.mit.edu	37	chr2	198949433	198949433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcaaaagaaggttgccCaagatatgacccagccatta	9	10	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198949433	A	A	198949433	3	1	61	1	0	0	0	0	1	0	0	0	12134	595	21	2	1198	2	PLCL1	2	198949433	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	111	198949433	44249940	1361	69606											
PLCL1	5334	broad.mit.edu	37	chr2	198949519	198949519	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccagttcagggggccagcTgacatcaatgggtacattag	13	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198949519	G	G	198949519	2	3	61	1	0	0	0	0	0	0	0	1	12134	1567	55	5		5	PLCL1	2	198949519	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	86	198949519	44249854	1362	69607											
PLCL1	5334	broad.mit.edu	37	chr2	198950124	198950124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcattgcaaatgagtaccCagaggattttgttaattata	8	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198950124	A	A	198950124	3	1	61	1	0	0	0	0	1	0	0	0	12134	594	21	2	1889	2	PLCL1	2	198950124	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	605	198950124	44249249	1363	69608											
PLCL1	5334	broad.mit.edu	37	chr2	198950365	198950365	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagtttcttacttcagCgcaaatacaaagggcattct	8	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198950365	T	T	198950365	2	4	61	1	0	0	0	0	0	0	0	1	12134	767	27	4		4	PLCL1	2	198950365	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	241	198950365	44249008	1364	69609											
PLCL1	5334	broad.mit.edu	37	chr2	198953474	198953474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtatagttatgaattaGccctctattatcttttaaaa	5	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198953474	T	T	198953474	1	4	61	0	1	0	0	0	0	0	0	0	12134	986	34	3		3	PLCL1	2	198953474	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3109	198953474	44245899	1365	69610											
SATB2	23314	broad.mit.edu	37	chr2	200137063	200137063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcggtcagcagctcctcGtccttatattcagccacgtc	8	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200137063	T	T	200137063	3	4	61	1	0	0	0	0	1	0	0	0	13966	1136	40	3	132	3	SATB2	2	200137063	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1183589	200137063	43062310	1366	69611											
SATB2	23314	broad.mit.edu	37	chr2	200188558	200188559	+	Missense_Mutation	DNP	GG	TT	TT													tgcagccactttggcaaacaGggcttgagacaccttggccc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	200188559	TT	TT	200188558	3	4	61	1	0	0	0	0	1	0	0	0	13966	991	35	2	703	2	SATB2	2	200188558	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	51495	200188558	43010815	1367	69612											
KCTD18	130535	broad.mit.edu	37	chr2	201369767	201369767	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaactaggtctgaggacctCtacaattataaatgtttctt	6	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201369767	A	A	201369767	1	1	61	0	1	0	0	0	0	0	0	0	8175	928	32	3		3	KCTD18	2	201369767	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1181209	201369767	41829606	1368	69613											
AOX1	316	broad.mit.edu	37	chr2	201534460	201534460	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgaagacaagttcacaAaaatggtacgtttgcatggt	10	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201534460	G	G	201534460	3	3	61	1	0	0	0	0	1	0	0	0	731	15	1	5	4095	5	AOX1	2	201534460	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	164693	201534460	41664913	1369	69614											
ORC2L	4999	broad.mit.edu	37	chr2	201800520	201800520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttggctgaatatgactgCattagtgtcctcttcatgtt	8	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201800520	A	A	201800520	3	1	61	1	0	0	0	0	1	0	0	0	11356	710	25	3	1163	3	ORC2L	2	201800520	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	266060	201800520	41398853	1370	69615											
MPP4	58538	broad.mit.edu	37	chr2	202545734	202545734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcctcctggggccagtaCtcagtcatggcacggacgta	13	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202545734	A	A	202545734	3	1	61	1	0	0	0	0	1	0	0	0	9830	564	20	3	1209	3	MPP4	2	202545734	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	745214	202545734	40653639	1371	69616											
MPP4	58538	broad.mit.edu	37	chr2	202547586	202547586	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgttcagggtccagtcCctcaactgaaactccattca	6	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202547586	A	A	202547586	4	1	61	1	0	0	0	0	0	1	0	0	9830	632	22	2	1345	2	MPP4	2	202547586	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1852	202547586	40651787	1372	69617											
CDK15	65061	broad.mit.edu	37	chr2	202689436	202689436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccaagagccatatcagcgCtagcaaaatggcagaattca	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202689436	T	T	202689436	1	4	61	0	1	0	0	0	0	0	0	0	3161	812	28	4		4	CDK15	2	202689436	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	141850	202689436	40509937	1373	69618											
NOP58	51602	broad.mit.edu	37	chr2	203146940	203146940	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacttataaaacatatatcAtttcatttcagaagtaacat	2	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203146940	T	T	203146940	1	4	61	0	1	0	0	0	0	0	0	0	10635	232	8	5		5	NOP58	2	203146940	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	457504	203146940	40052433	1374	69619											
BMPR2	659	broad.mit.edu	37	chr2	203329572	203329572	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgtgcgtttaaagatccGtatcagcaagaccttgggat	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203329572	T	T	203329572	2	4	61	1	0	0	0	0	0	0	0	1	1477	1132	40	3		3	BMPR2	2	203329572	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	182632	203329572	39869801	1375	69620											
NBEAL1	65065	broad.mit.edu	37	chr2	204055853	204055853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattgttcgacagatgcgGcaccgatccttagccagaga	10	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204055853	T	T	204055853	1	4	61	0	1	0	0	0	0	0	0	0	10282	1218	42	3		3	NBEAL1	2	204055853	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	726281	204055853	39143520	1376	69621											
ICOS	29851	broad.mit.edu	37	chr2	204801541	204801541	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgtttctggcaaacatgAagtcaggcctctggtatttc	9	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204801541	T	T	204801541	4	4	61	1	0	0	0	0	0	1	0	0	7556	247	9	5	6	5	ICOS	2	204801541	Nonsense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	745688	204801541	38397832	1377	69622											
ICOS	29851	broad.mit.edu	37	chr2	204820722	204820722	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgctttcatcttccaaacTtaagagtatatatatgtttt	4	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204820722	G	G	204820722	1	3	61	0	1	0	0	0	0	0	0	0	7556	1624	56	5		5	ICOS	2	204820722	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19181	204820722	38378651	1378	69623											
PARD3B	117583	broad.mit.edu	37	chr2	206050393	206050393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggctggtttatgtgttgGctaaaactgcgtctgagaga	14	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206050393	T	T	206050393	1	4	61	0	1	0	0	0	0	0	0	0	11538	1218	42	3		3	PARD3B	2	206050393	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1229671	206050393	37148980	1379	69624											
PARD3B	117583	broad.mit.edu	37	chr2	206166423	206166423	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagggcttcggcgccatgctGaggtatgggcctgctttgaa	15	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206166423	A	A	206166423	2	1	61	1	0	0	0	0	0	0	0	1	11538	1277	45	4		4	PARD3B	2	206166423	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	116030	206166423	37032950	1380	69625											
NRP2	8828	broad.mit.edu	37	chr2	206659528	206659529	+	Missense_Mutation	DNP	GG	TT	TT													cttctgcaacctcagggtctGgcgccccctcgaccgacaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	206659529	TT	TT	206659528	3	4	61	1	0	0	0	0	1	0	0	0	10756	1348	47	2	2920	2	NRP2	2	206659528	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	493105	206659528	36539845	1381	69626											
ZDBF2	57683	broad.mit.edu	37	chr2	207170388	207170388	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagcatctgatcagccccAagagactgcacaagacttaa	8	12	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207170388	T	T	207170388	3	4	61	1	0	0	0	0	1	0	0	0	17725	130	5	5	1146	5	ZDBF2	2	207170388	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	510860	207170388	36028985	1382	69627											
ZDBF2	57683	broad.mit.edu	37	chr2	207172478	207172478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacaaaaacagtaaatcaGgtgattctaaaataactttt	6	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207172478	T	T	207172478	3	4	61	1	0	0	0	0	1	0	0	0	17725	1000	35	2	3236	2	ZDBF2	2	207172478	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2090	207172478	36026895	1383	69628											
ZDBF2	57683	broad.mit.edu	37	chr2	207174982	207174982	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagatattgatgacttgtcAgtggccttagataaaccatg	9	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207174982	C	C	207174982	2	2	61	1	0	0	0	0	0	0	0	1	17725	175	7	5		5	ZDBF2	2	207174982	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2504	207174982	36024391	1384	69629											
FASTKD2	22868	broad.mit.edu	37	chr2	207636110	207636110	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caattttctaggaggacattGctgggcttttaggtttagct	11	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207636110	C	C	207636110	1	2	61	0	1	0	0	0	0	0	0	0	5743	1334	46	4		4	FASTKD2	2	207636110	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	461128	207636110	35563263	1385	69630											
PIKFYVE	200576	broad.mit.edu	37	chr2	209182706	209182706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagttcagcaaaccatGgctgtgtgcttaggtaacaa	11	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209182706	T	T	209182706	1	4	61	0	1	0	0	0	0	0	0	0	12019	1363	47	2		2	PIKFYVE	2	209182706	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1546596	209182706	34016667	1386	69631											
PIKFYVE	200576	broad.mit.edu	37	chr2	209191144	209191144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgagtgatgctgtgtgGtcaacaaaggtgagccagac	13	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209191144	T	T	209191144	3	4	61	1	0	0	0	0	1	0	0	0	12019	1270	44	3	3694	3	PIKFYVE	2	209191144	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8438	209191144	34008229	1387	69632											
ACADL	33	broad.mit.edu	37	chr2	211057678	211057678	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattttcatgaggtgcttcaAaaccagaaaactaattattt	6	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211057678	T	T	211057678	1	4	61	0	1	0	0	0	0	0	0	0	112	29	1	5		5	ACADL	2	211057678	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1866534	211057678	32141695	1388	69633											
CPS1	1373	broad.mit.edu	37	chr2	211465309	211465309	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaagagaggtgtgctcaAggaatatggtgtgaaagtcc	13	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211465309	C	C	211465309	3	2	61	1	0	0	0	0	1	0	0	0	3855	72	3	5	1660	5	CPS1	2	211465309	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	407631	211465309	31734064	1389	69634											
CPS1	1373	broad.mit.edu	37	chr2	211477065	211477065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagttgcttttccagaatGtagtcagtctggacattaaa	8	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211477065	T	T	211477065	1	4	61	0	1	0	0	0	0	0	0	0	3855	1392	48	3		3	CPS1	2	211477065	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11756	211477065	31722308	1390	69635											
CPS1	1373	broad.mit.edu	37	chr2	211521386	211521386	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaataaaagtggaagggAaaaggcaacactcagaaaaa	9	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211521386	G	G	211521386	1	3	61	0	1	0	0	0	0	0	0	0	3855	261	9	5		5	CPS1	2	211521386	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	44321	211521386	31677987	1391	69636											
CPS1	1373	broad.mit.edu	37	chr2	211527882	211527882	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccccggttgagggatgcTgaccccattctgagatgtga	14	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211527882	A	A	211527882	2	1	61	1	0	0	0	0	0	0	0	1	3855	1567	55	5		5	CPS1	2	211527882	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6496	211527882	31671491	1392	69637											
CPS1	1373	broad.mit.edu	37	chr2	211539832	211539832	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtagtttcaaaacttagaGtcaaatcattaaaaagactg	7	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211539832	A	A	211539832	1	1	61	0	1	0	0	0	0	0	0	0	3855	1044	36	4		4	CPS1	2	211539832	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11950	211539832	31659541	1393	69638											
ERBB4	2066	broad.mit.edu	37	chr2	212483876	212483876	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgataatggagaaaaatGtgattgcctgggtgtctgta	12	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212483876	A	A	212483876	1	1	61	0	1	0	0	0	0	0	0	0	5251	1392	48	4		4	ERBB4	2	212483876	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	944044	212483876	30715497	1394	69639											
ERBB4	2066	broad.mit.edu	37	chr2	212495153	212495153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaacctgatgaaaatccCcaaacacatgaagaggagaa	7	9	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212495153	A	A	212495153	1	1	61	0	1	0	0	0	0	0	0	0	5251	638	22	2		2	ERBB4	2	212495153	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11277	212495153	30704220	1395	69640											
ERBB4	2066	broad.mit.edu	37	chr2	212589753	212589753	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtatgcctgaatcaaatagGgaaggaaaggagagcaggat	14	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212589753	C	C	212589753	1	2	61	0	1	0	0	0	0	0	0	0	5251	1247	43	4		4	ERBB4	2	212589753	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	94600	212589753	30609620	1396	69641											
SPAG16	79582	broad.mit.edu	37	chr2	214878957	214878957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacaagatcctttctatgCacttgtatccattctgcctt	4	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214878957	A	A	214878957	1	1	61	0	1	0	0	0	0	0	0	0	15094	725	25	3		3	SPAG16	2	214878957	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2289204	214878957	28320416	1397	69642											
SPAG16	79582	broad.mit.edu	37	chr2	215068447	215068447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctcccaggggtccttgGggagggctaccagaggaact	15	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215068447	T	T	215068447	1	4	61	0	1	0	0	0	0	0	0	0	15094	1247	43	2		2	SPAG16	2	215068447	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	189490	215068447	28130926	1398	69643											
SPAG16	79582	broad.mit.edu	37	chr2	215126038	215126038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagctaggcttcagaagcCccctggaattcccaatactg	10	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215126038	A	A	215126038	1	1	61	0	1	0	0	0	0	0	0	0	15094	638	22	2		2	SPAG16	2	215126038	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	57591	215126038	28073335	1399	69644											
SPAG16	79582	broad.mit.edu	37	chr2	215145632	215145632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagtagcacatgtaatctGcgacattctggctgataatg	9	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215145632	T	T	215145632	1	4	61	0	1	0	0	0	0	0	0	0	15094	1334	46	3		3	SPAG16	2	215145632	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19594	215145632	28053741	1400	69645											
ABCA12	26154	broad.mit.edu	37	chr2	215819926	215819926	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaaataagggaccttacCggatcattaggcttttcctt	8	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215819926	A	A	215819926	2	1	61	1	0	0	0	0	0	0	0	1	30	666	23	1		1	ABCA12	2	215819926	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	674294	215819926	27379447	1401	69646											
ATIC	471	broad.mit.edu	37	chr2	216195134	216195134	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatacacggtgattataggGaatttccatataccccgctt	7	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216195134	T	T	216195134	1	4	61	0	1	0	0	0	0	0	0	0	1109	1189	41	3		3	ATIC	2	216195134	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	375208	216195134	27004239	1402	69647											
MREG	55686	broad.mit.edu	37	chr2	216809647	216809647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgccaggcatggaaccCcaggcttcttggggtaagtt	12	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216809647	A	A	216809647	3	1	61	1	0	0	0	0	1	0	0	0	9854	623	22	2	64	2	MREG	2	216809647	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	614513	216809647	26389726	1403	69648											
TMEM169	92691	broad.mit.edu	37	chr2	216964965	216964965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcgtgtataatgaggaaagGaccttctggcacaagatctc	10	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216964965	T	T	216964965	3	4	61	1	0	0	0	0	1	0	0	0	16207	1165	41	3	600	3	TMEM169	2	216964965	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	155318	216964965	26234408	1404	69649											
MARCH4	57574	broad.mit.edu	37	chr2	217234394	217234394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatataaccgttccccagGgcaagcaggcgagtagcaat	10	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217234394	T	T	217234394	1	4	61	0	1	0	0	0	0	0	0	0	9395	1247	43	2		2	MARCH4	2	217234394	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	269429	217234394	25964979	1405	69650											
IGFBP5	3488	broad.mit.edu	37	chr2	217543954	217543954	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccctgaaagcagggggatAagaaccaggaagcagaggga	15	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217543954	T	T	217543954	1	4	61	0	1	0	0	0	0	0	0	0	7652	377	13	5		5	IGFBP5	2	217543954	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	309560	217543954	25655419	1406	69651											
TNS1	7145	broad.mit.edu	37	chr2	218674516	218674516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcacaggaaggagaacCccaccgaggagcaggcaggg	16	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218674516	A	A	218674516	1	1	61	0	1	0	0	0	0	0	0	0	16466	638	22	2		2	TNS1	2	218674516	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1130562	218674516	24524857	1407	69652											
TNS1	7145	broad.mit.edu	37	chr2	218677108	218677108	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctcggtttggaatgaccAgcttgcaaggcagggccaat	12	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	218677108	C	C	218677108	3	2	61	1	0	0	0	0	1	0	0	0	16466	188	7	5	528	5	TNS1	2	218677108	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2592	218677108	24522265	1408	69653											
TNS1	7145	broad.mit.edu	37	chr2	218695175	218695175	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctaaaaccagagtccagGgagcagctttctgagttcag	11	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218695175	A	A	218695175	1	1	61	0	1	0	0	0	0	0	0	0	16466	1247	43	4		4	TNS1	2	218695175	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18067	218695175	24504198	1409	69654											
TNS1	7145	broad.mit.edu	37	chr2	218712332	218712332	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttggtgagagcagaggctGagcagtgaggccagggagag	19	6	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	218712332	C	C	218712332	3	2	61	1	0	0	0	0	1	0	0	0	16466	1299	45	4	2742	4	TNS1	2	218712332	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17157	218712332	24487041	1410	69655											
RUFY4	285180	broad.mit.edu	37	chr2	218926021	218926021	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttctagggattctggccaAcatggggcagaatctagtag	12	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	218926021	G	G	218926021	1	3	61	0	1	0	0	0	0	0	0	0	13852	58	2	5		5	RUFY4	2	218926021	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	213689	218926021	24273352	1411	69656											
C2orf62	375307	broad.mit.edu	37	chr2	219221640	219221640	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttactccacaggtgggaaGaggactgctggggctggagg	18	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219221640	C	C	219221640	1	2	61	0	1	0	0	0	0	0	0	0	2203	957	33	4		4	C2orf62	2	219221640	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	295619	219221640	23977733	1412	69657											
C2orf62	375307	broad.mit.edu	37	chr2	219222789	219222789	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagaagctggagctcatgGaacagcacagccaagacttc	11	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219222789	T	T	219222789	4	4	61	1	0	0	0	0	0	1	0	0	2203	1175	41	3	363	3	C2orf62	2	219222789	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1149	219222789	23976584	1413	69658											
C2orf62	375307	broad.mit.edu	37	chr2	219232596	219232596	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccccttcgacccgtggcGtccgtcgtcaccggccttgg	13	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219232596	A	A	219232596	3	1	61	1	0	0	0	0	1	0	0	0	2203	1145	40	4	1111	4	C2orf62	2	219232596	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9807	219232596	23966777	1414	69659											
USP37	57695	broad.mit.edu	37	chr2	219320359	219320359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatcactctgcacggcagcCtcttggatttttgatacctc	8	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219320359	A	A	219320359	3	1	61	1	0	0	0	0	1	0	0	0	17195	680	24	2	151	2	USP37	2	219320359	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	87763	219320359	23879014	1415	69660											
USP37	57695	broad.mit.edu	37	chr2	219346744	219346744	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgattagatactaaagcCtttctatttcaaaagggaat	6	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219346744	T	T	219346744	1	4	61	0	1	0	0	0	0	0	0	0	17195	696	24	4		4	USP37	2	219346744	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26385	219346744	23852629	1416	69661											
CYP27A1	1593	broad.mit.edu	37	chr2	219674535	219674535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacagggccccagagggccAgggcgaaagacagtgggcac	17	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219674535	T	T	219674535	1	4	61	0	1	0	0	0	0	0	0	0	4191	203	7	5		5	CYP27A1	2	219674535	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	327791	219674535	23524838	1417	69662											
WNT10A	80326	broad.mit.edu	37	chr2	219747107	219747107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcaagcctggagactcGcaacaagatcccctatgaga	9	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219747107	T	T	219747107	3	4	61	1	0	0	0	0	1	0	0	0	17509	1087	38	3	344	3	WNT10A	2	219747107	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	72572	219747107	23452266	1418	69663											
CCDC108	255101	broad.mit.edu	37	chr2	219888941	219888941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgttgaccaggagcagGctgcggtaggtgggctcacc	15	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219888941	T	T	219888941	3	4	61	1	0	0	0	0	1	0	0	0	2769	1194	42	3	3470	3	CCDC108	2	219888941	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	141834	219888941	23310432	1419	69664											
NHEJ1	79840	broad.mit.edu	37	chr2	220022695	220022696	+	Intron	DEL	TC	-	-													gtagggaaactaactttcttTctctctctctctctctctca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220022696	-	-	220022695	6	5	61	0	1	1	0	1	0	0	0	0	10497	1798	62	0		0	NHEJ1	2	220022695	Intron	DEL	TC	TCGA-17-Z031-01A-01W-0746-08	133754	220022695	23176678	1420	69665											
ABCB6	10058	broad.mit.edu	37	chr2	220077171	220077171	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcgtagaagcgaaacaGcaggcgcaaaattgtgctct	12	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220077171	C	C	220077171	3	2	61	1	0	0	0	0	1	0	0	0	45	962	34	4	646	4	ABCB6	2	220077171	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54476	220077171	23122202	1421	69666											
ATG9A	79065	broad.mit.edu	37	chr2	220085570	220085570	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcccaccctccaagagGcagccgagagaaatgagagg	12	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220085570	C	C	220085570	3	2	61	1	0	0	0	0	1	0	0	0	1106	1203	42	4	114	4	ATG9A	2	220085570	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8399	220085570	23113803	1422	69667											
GLB1L	79411	broad.mit.edu	37	chr2	220108126	220108126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaagagatggaactagcCctgcgggttgtttggttgtt	16	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220108126	A	A	220108126	1	1	61	0	1	0	0	0	0	0	0	0	6492	638	22	2		2	GLB1L	2	220108126	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22556	220108126	23091247	1423	69668											
PTPRN	5798	broad.mit.edu	37	chr2	220161477	220161477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggccactcacaatgggGctggcgttgatgtaatcgct	13	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220161477	T	T	220161477	3	4	61	1	0	0	0	0	1	0	0	0	12915	1194	42	3	667	3	PTPRN	2	220161477	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	53351	220161477	23037896	1424	69669											
PTPRN	5798	broad.mit.edu	37	chr2	220162880	220162880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatagggaggtttcagagCtgctcctcaccccggtccca	12	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220162880	A	A	220162880	1	1	61	0	1	0	0	0	0	0	0	0	12915	812	28	3		3	PTPRN	2	220162880	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1403	220162880	23036493	1425	69670											
PTPRN	5798	broad.mit.edu	37	chr2	220168633	220168633	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccactggggatcagaactgtAccctctgccctgcagctcat	9	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220168633	T	T	220168633	1	4	61	0	1	0	0	0	0	0	0	0	12915	406	14	5		5	PTPRN	2	220168633	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5753	220168633	23030740	1426	69671											
SPEG	10290	broad.mit.edu	37	chr2	220304580	220304580	+	Intron	DEL	C	-	-													gggaacaggggctcaagttaCcccctctcatcactcagctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220304580	-	-	220304580	6	5	61	0	1	1	0	1	0	0	0	0	15154	522	18	0		0	SPEG	2	220304580	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	135947	220304580	22894793	1427	69672											
SPEG	10290	broad.mit.edu	37	chr2	220309869	220309869	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtacagaggacgggcGctctctatccacgtgtaagt	12	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220309869	T	T	220309869	2	4	61	1	0	0	0	0	0	0	0	1	15154	1074	38	3		3	SPEG	2	220309869	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5289	220309869	22889504	1428	69673											
SPEG	10290	broad.mit.edu	37	chr2	220326769	220326769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggctccaaggcaccccCcaccttcaaggtcagacccc	7	20	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220326769	A	A	220326769	3	1	61	1	0	0	0	0	1	0	0	0	15154	623	22	2	2632	2	SPEG	2	220326769	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16900	220326769	22872604	1429	69674											
SPEG	10290	broad.mit.edu	37	chr2	220348024	220348024	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccgagttctctggctccCgggtgtccctcacagacatt	10	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220348024	G	G	220348024	3	3	61	1	0	0	0	0	1	0	0	0	15154	643	23	4	5969	4	SPEG	2	220348024	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21255	220348024	22851349	1430	69675											
INHA	3623	broad.mit.edu	37	chr2	220439498	220439498	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagatacatgttccggccAtcccagcatacacgcagccg	8	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220439498	G	G	220439498	2	3	61	1	0	0	0	0	0	0	0	1	7810	204	8	5		5	INHA	2	220439498	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	91474	220439498	22759875	1431	69676											
STK11IP	114790	broad.mit.edu	37	chr2	220473360	220473360	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggggcctgagggcgtacgGggcagggaatgctttctcag	19	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220473360	C	C	220473360	2	2	61	1	0	0	0	0	0	0	0	1	15406	1219	43	4		4	STK11IP	2	220473360	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33862	220473360	22726013	1432	69677											
SLC4A3	6508	broad.mit.edu	37	chr2	220494260	220494260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagggttgggggctgtatgGtaggtcggggcaaggcccca	20	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220494260	T	T	220494260	1	4	61	0	1	0	0	0	0	0	0	0	14769	1276	44	3		3	SLC4A3	2	220494260	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20900	220494260	22705113	1433	69678											
SLC4A3	6508	broad.mit.edu	37	chr2	220504500	220504500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacccccttccttgggccCcacggtcttacatcttcact	5	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220504500	A	A	220504500	1	1	61	0	1	0	0	0	0	0	0	0	14769	638	22	2		2	SLC4A3	2	220504500	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10240	220504500	22694873	1434	69679											
SLC4A3	6508	broad.mit.edu	37	chr2	220505152	220505152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtgtcacctcctccagGcctgtccatcgtcatggggg	12	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220505152	T	T	220505152	3	4	61	1	0	0	0	0	1	0	0	0	14769	1217	42	3	3437	3	SLC4A3	2	220505152	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	652	220505152	22694221	1435	69680											
EPHA4	2043	broad.mit.edu	37	chr2	222307503	222307503	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaaaatgtgtgtttaatttCccagtaacttctagcttggc	8	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222307503	A	A	222307503	1	1	61	0	1	0	0	0	0	0	0	0	5211	870	30	3		3	EPHA4	2	222307503	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1802351	222307503	20891870	1436	69681											
EPHA4	2043	broad.mit.edu	37	chr2	222307584	222307584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccaagtgaatgatgttcGgatggtcaaactgtcccatg	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222307584	T	T	222307584	3	4	61	1	0	0	0	0	1	0	0	0	5211	1116	39	1	949	1	EPHA4	2	222307584	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	81	222307584	20891789	1437	69682											
EPHA4	2043	broad.mit.edu	37	chr2	222428328	222428328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcacttactcattagacCcctgtgtcccaccacatccc	4	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222428328	A	A	222428328	1	1	61	0	1	0	0	0	0	0	0	0	5211	638	22	2		2	EPHA4	2	222428328	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	120744	222428328	20771045	1438	69683											
PAX3	5077	broad.mit.edu	37	chr2	223084955	223084955	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctggaaaatccatgcctGgtgctggggaggcagtaggc	16	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223084955	T	T	223084955	2	4	61	1	0	0	0	0	0	0	0	1	11574	1335	47	2		2	PAX3	2	223084955	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	656627	223084955	20114418	1439	69684											
FARSB	10056	broad.mit.edu	37	chr2	223511493	223511493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagttgctcaaattcagaCttgacttcttctgccgtatg	7	10	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223511493	A	A	223511493	1	1	61	0	1	0	0	0	0	0	0	0	5737	580	20	3		3	FARSB	2	223511493	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	426538	223511493	19687880	1440	69685											
WDFY1	57590	broad.mit.edu	37	chr2	224760411	224760411	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtaaaatataactctacatCaggacgtatacatttgacag	6	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224760411	A	A	224760411	1	1	61	0	1	0	0	0	0	0	0	0	17395	841	29	3		3	WDFY1	2	224760411	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1248918	224760411	18438962	1441	69686											
SERPINE2	5270	broad.mit.edu	37	chr2	224856722	224856722	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agattgtcaatcatatctgtGaagccaaagaacaaacaagg	8	7	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224856722	A	A	224856722	1	1	61	0	1	0	0	0	0	0	0	0	14225	1305	45	4		4	SERPINE2	2	224856722	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	96311	224856722	18342651	1442	69687											
SERPINE2	5270	broad.mit.edu	37	chr2	224865927	224865927	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgtggccaccaccacaAtcaagacccaggatggctcc	9	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224865927	T	T	224865927	1	4	61	0	1	0	0	0	0	0	0	0	14225	116	4	5		5	SERPINE2	2	224865927	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9205	224865927	18333446	1443	69688											
FAM124B	79843	broad.mit.edu	37	chr2	225257526	225257527	+	Intron	DEL	TA	-	-													agttttgtcaccaacgaggcTatacacagtatagttacaga					rs145671425		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	225257527	-	-	225257526	6	5	61	0	1	1	0	1	0	0	0	0	5472	1537	53	0		0	FAM124B	2	225257526	Intron	DEL	TA	TCGA-17-Z031-01A-01W-0746-08	391599	225257526	17941847	1444	69689											
DOCK10	55619	broad.mit.edu	37	chr2	225638017	225638018	+	Missense_Mutation	DNP	GG	TT	TT													attcagttctgtgctcgattGgctaattacttgtattctct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	225638018	TT	TT	225638017	3	4	61	1	0	0	0	0	1	0	0	0	4725	1357	47	2	515	2	DOCK10	2	225638017	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	380491	225638017	17561356	1445	69690											
DOCK10	55619	broad.mit.edu	37	chr2	225714117	225714117	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acatacctgccaaggcatgtCcttagtctgatgaggtctag	10	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225714117	G	G	225714117	1	3	61	0	1	0	0	0	0	0	0	0	4725	870	30	4		4	DOCK10	2	225714117	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76100	225714117	17485256	1446	69691											
KIAA1486	57624	broad.mit.edu	37	chr2	226320968	226320968	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcccagactttctgcatgaGactgtatctcctgatgaaac	8	11	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226320968	T	T	226320968	1	4	61	0	1	0	0	0	0	0	0	0	8307	957	33	3		3	KIAA1486	2	226320968	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	606851	226320968	16878405	1447	69692											
KIAA1486	57624	broad.mit.edu	37	chr2	226447029	226447029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcgcagtgtgctactcCcacggtgcctgacttggact	10	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226447029	A	A	226447029	3	1	61	1	0	0	0	0	1	0	0	0	8307	623	22	2	906	2	KIAA1486	2	226447029	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	126061	226447029	16752344	1448	69693											
COL4A4	1286	broad.mit.edu	37	chr2	227912134	227912134	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccagctagaagtaattgttCtgcttttcaaactaaactac	6	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227912134	G	G	227912134	1	3	61	0	1	0	0	0	0	0	0	0	3725	928	32	4		4	COL4A4	2	227912134	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1465105	227912134	15287239	1449	69694											
C2orf83	56918	broad.mit.edu	37	chr2	228475984	228475984	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtttaagggggtaagAccagttcagagatggagcaa	16	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228475984	T	T	228475984	1	4	61	0	1	0	0	0	0	0	0	0	2220	290	10	5		5	C2orf83	2	228475984	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	563850	228475984	14723389	1450	69695											
SLC19A3	80704	broad.mit.edu	37	chr2	228552050	228552050	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaaacatatgccacccatCtcaaaatctttccttattat	2	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228552050	T	T	228552050	1	4	61	0	1	0	0	0	0	0	0	0	14543	928	32	4		4	SLC19A3	2	228552050	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76066	228552050	14647323	1451	69696											
SLC19A3	80704	broad.mit.edu	37	chr2	228564016	228564016	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgcagtagccgctcaCtctctggtagtgctcggggc	13	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228564016	T	T	228564016	3	4	61	1	0	0	0	0	1	0	0	0	14543	565	20	4	1091	4	SLC19A3	2	228564016	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11966	228564016	14635357	1452	69697											
CCL20	6364	broad.mit.edu	37	chr2	228681090	228681090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggtgaaatatattgtgCgtctcctcaggtatgttaca	10	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228681090	T	T	228681090	3	4	61	1	0	0	0	0	1	0	0	0	2920	768	27	4	269	4	CCL20	2	228681090	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	117074	228681090	14518283	1453	69698											
SPHKAP	80309	broad.mit.edu	37	chr2	228855715	228855716	+	Splice_Site	DNP	CC	AA	AA													tccaaacctggtacatgataCcttttcaattctgttttcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	228855716	AA	AA	228855715	5	1	61	1	0	0	0	0	0	0	1	0	15166	521	18	3	150	3	SPHKAP	2	228855715	Splice_Site	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	174625	228855715	14343658	1454	69699											
SPHKAP	80309	broad.mit.edu	37	chr2	228860428	228860428	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactgtagagggcaagataTtattaccaagagaggcagca	11	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228860428	C	C	228860428	1	2	61	0	1	0	0	0	0	0	0	0	15166	1508	52	5		5	SPHKAP	2	228860428	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4713	228860428	14338945	1455	69700											
SPHKAP	80309	broad.mit.edu	37	chr2	228881944	228881944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccgtctggaggaggcaCtttctctgctgtctctttcg	11	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228881944	A	A	228881944	3	1	61	1	0	0	0	0	1	0	0	0	15166	565	20	3	1500	3	SPHKAP	2	228881944	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21516	228881944	14317429	1456	69701											
SPHKAP	80309	broad.mit.edu	37	chr2	228882762	228882762	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagttgccatggagacgacCgtgtctgctaattcttccgc	10	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228882762	A	A	228882762	2	1	61	1	0	0	0	0	0	0	0	1	15166	639	23	1		1	SPHKAP	2	228882762	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	818	228882762	14316611	1457	69702											
DNER	92737	broad.mit.edu	37	chr2	230231585	230231585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacgccgcccccacagcCaacctggcatgccggatgga	10	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230231585	A	A	230231585	1	1	61	0	1	0	0	0	0	0	0	0	4707	609	21	2		2	DNER	2	230231585	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1348823	230231585	12967788	1458	69703											
DNER	92737	broad.mit.edu	37	chr2	230298008	230298008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgtttaactaatccaacCgcaaaacatatggtcagaac	7	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230298008	A	A	230298008	1	1	61	0	1	0	0	0	0	0	0	0	4707	667	23	1		1	DNER	2	230298008	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66423	230298008	12901365	1459	69704											
DNER	92737	broad.mit.edu	37	chr2	230305798	230305798	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attctccccacatgtgtcccCatgagcattttcagccttac	5	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230305798	G	G	230305798	1	3	61	0	1	0	0	0	0	0	0	0	4707	609	21	4		4	DNER	2	230305798	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7790	230305798	12893575	1460	69705											
TRIP12	9320	broad.mit.edu	37	chr2	230693988	230693988	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataggtgagggggaagaccCcttgcctctaacaaagctaa	11	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230693988	T	T	230693988	2	4	61	1	0	0	0	0	0	0	0	1	16681	622	22	4		4	TRIP12	2	230693988	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	388190	230693988	12505385	1461	69706											
TRIP12	9320	broad.mit.edu	37	chr2	230723819	230723819	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaatcagtgatggtgctAcacccagctttggctgaggt	13	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230723819	T	T	230723819	4	4	61	1	0	0	0	0	0	1	0	0	16681	389	14	5	5564	5	TRIP12	2	230723819	Nonsense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29831	230723819	12475554	1462	69707											
SP110	3431	broad.mit.edu	37	chr2	231051843	231051844	+	Intron	INS	-	A	A													cactcccaccagcagtgtatINSaaacattcccttttcaccac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231051844	A	A	231051843	6	5	61	0	1	1	1	0	0	0	0	0	15075	1421	49	0		0	SP110	2	231051843	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	328024	231051843	12147530	1463	69708											
SP140	11262	broad.mit.edu	37	chr2	231103043	231103043	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcattgttcagcaggaTtaacctgatggcctatcctg	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231103043	A	A	231103043	3	1	61	1	0	0	0	0	1	0	0	0	15076	1493	52	5	363	5	SP140	2	231103043	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	51200	231103043	12096330	1464	69709											
SP140	11262	broad.mit.edu	37	chr2	231113823	231113823	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaattatgtcaattttcTgttgtgcctttttgaaaact	7	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231113823	A	A	231113823	1	1	61	0	1	0	0	0	0	0	0	0	15076	1595	55	5		5	SP140	2	231113823	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10780	231113823	12085550	1465	69710											
SP140	11262	broad.mit.edu	37	chr2	231120199	231120199	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgttcggaaatgtgtgatGgagaagagcgccaggaagcc	15	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231120199	T	T	231120199	4	4	61	1	0	0	0	0	0	1	0	0	15076	1349	47	2	1355	2	SP140	2	231120199	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6376	231120199	12079174	1466	69711											
SP140	11262	broad.mit.edu	37	chr2	231134613	231134613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgtgtttctcagaagaGgtgccaggaagcccagaagc	13	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231134613	T	T	231134613	3	4	61	1	0	0	0	0	1	0	0	0	15076	991	35	2	1560	2	SP140	2	231134613	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14414	231134613	12064760	1467	69712											
SP140	11262	broad.mit.edu	37	chr2	231177452	231177452	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggcaccctaaaatatgccGctggtttgccactgacttca	8	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231177452	C	C	231177452	1	2	61	0	1	0	0	0	0	0	0	0	15076	1102	38	4		4	SP140	2	231177452	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42839	231177452	12021921	1468	69713											
PSMD1	5707	broad.mit.edu	37	chr2	231947621	231947622	+	Missense_Mutation	DNP	GG	TT	TT													ttagacacggtggcagtctgGgccttggtttggcagccatg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	231947622	TT	TT	231947621	3	4	61	1	0	0	0	0	1	0	0	0	12798	1232	43	2	1488	2	PSMD1	2	231947621	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	770169	231947621	11251752	1469	69714											
ALPP	250	broad.mit.edu	37	chr2	233244940	233244941	+	Missense_Mutation	DNP	CC	AA	AA													tacatgtttcgcatgggaacCccagaccctgagtacccaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	233244941	AA	AA	233244940	3	1	61	1	0	0	0	0	1	0	0	0	548	610	22	2	724	2	ALPP	2	233244940	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	1297319	233244940	9954433	1470	69715											
ALPI	248	broad.mit.edu	37	chr2	233321600	233321600	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtagagctcagggtgtctcCgttcgcagacatacaatgtg	12	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233321600	G	G	233321600	1	3	61	0	1	0	0	0	0	0	0	0	543	667	23	4		4	ALPI	2	233321600	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76660	233321600	9877773	1471	69716											
ECEL1	9427	broad.mit.edu	37	chr2	233345122	233345122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatacctgtagtgctcagGggcatgcttgtcagtcagca	13	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233345122	T	T	233345122	3	4	61	1	0	0	0	0	1	0	0	0	4931	1232	43	2	120	2	ECEL1	2	233345122	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23522	233345122	9854251	1472	69717											
NGEF	25791	broad.mit.edu	37	chr2	233784981	233784981	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgggggagcccccgcccctCggcgcctgttacctcctgca	13	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233784981	G	G	233784981	1	3	61	0	1	0	0	0	0	0	0	0	10489	899	31	4		4	NGEF	2	233784981	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	439859	233784981	9414392	1473	69718											
INPP5D	3635	broad.mit.edu	37	chr2	234078641	234078641	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggggaaccagtgaccccGtgctagatggccgctttttc	14	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234078641	A	A	234078641	1	1	61	0	1	0	0	0	0	0	0	0	7826	1160	40	4		4	INPP5D	2	234078641	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	293660	234078641	9120732	1474	69719											
SAG	6295	broad.mit.edu	37	chr2	234247495	234247495	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actgggagacagaaagcaagGaaaggcccatagcttctacc	11	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234247495	A	A	234247495	1	1	61	0	1	0	0	0	0	0	0	0	13919	1189	41	4		4	SAG	2	234247495	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	168854	234247495	8951878	1475	69720											
DGKD	8527	broad.mit.edu	37	chr2	234297019	234297019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaacggcaaaggtgagGccccatgcaggaaagcacac	12	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234297019	T	T	234297019	1	4	61	0	1	0	0	0	0	0	0	0	4507	1218	42	3		3	DGKD	2	234297019	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49524	234297019	8902354	1476	69721											
DGKD	8527	broad.mit.edu	37	chr2	234356867	234356867	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggagggcatggtgccctgGcccccagcctggagctgcct	17	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234356867	A	A	234356867	1	1	61	0	1	0	0	0	0	0	0	0	4507	1218	42	4		4	DGKD	2	234356867	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59848	234356867	8842506	1477	69722											
DNAJB3	414061	broad.mit.edu	37	chr2	234652531	234652531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcggatgaggcctgccggGgcacgtccagcacctcgtag	14	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234652531	T	T	234652531	3	4	61	1	0	0	0	0	1	0	0	0	4661	1232	43	2	409	2	DNAJB3	2	234652531	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	295664	234652531	8546842	1478	69723											
UGT1A5	54579	broad.mit.edu	37	chr2	234663457	234663457	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtatcaaaagaagaaaaAccaccctcaaaagctggaaa	6	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234663457	C	C	234663457	1	2	61	0	1	0	0	0	0	0	0	0	17074	58	2	5		5	UGT1A5	2	234663457	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10926	234663457	8535916	1479	69724											
UGT1A1	54658	broad.mit.edu	37	chr2	234669236	234669236	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcgggcataatgtttttgaGaatgattctttcctgcagcg	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234669236	T	T	234669236	3	4	61	1	0	0	0	0	1	0	0	0	17070	933	33	3	305	3	UGT1A1	2	234669236	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5779	234669236	8530137	1480	69725											
TRPM8	79054	broad.mit.edu	37	chr2	234851454	234851454	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaccatggcatgggccTgtggcctgaaccctggggct	15	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234851454	C	C	234851454	1	2	61	0	1	0	0	0	0	0	0	0	16717	1595	55	5		5	TRPM8	2	234851454	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	182218	234851454	8347919	1481	69726											
SPP2	6694	broad.mit.edu	37	chr2	234965828	234965828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttaccttgcagcagccaCggtgattcacgtgctgctct	10	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234965828	A	A	234965828	1	1	61	0	1	0	0	0	0	0	0	0	15205	551	19	3		3	SPP2	2	234965828	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	114374	234965828	8233545	1482	69727											
SPP2	6694	broad.mit.edu	37	chr2	234969063	234969063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatctgcccagcaggtgcaGggcgtgcatgctcgctgcag	15	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234969063	T	T	234969063	3	4	61	1	0	0	0	0	1	0	0	0	15205	991	35	2	398	2	SPP2	2	234969063	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3235	234969063	8230310	1483	69728											
SH3BP4	23677	broad.mit.edu	37	chr2	235951538	235951538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacatcggctactaccagGgcagggtgggcctcgtgcac	15	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235951538	T	T	235951538	3	4	61	1	0	0	0	0	1	0	0	0	14359	1232	43	2	2131	2	SH3BP4	2	235951538	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	982475	235951538	7247835	1484	69729											
SH3BP4	23677	broad.mit.edu	37	chr2	235951704	235951704	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgaggaccctgctcatggAgaacatcagcagctggcgct	13	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235951704	T	T	235951704	3	4	61	1	0	0	0	0	1	0	0	0	14359	304	11	5	2297	5	SH3BP4	2	235951704	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	166	235951704	7247669	1485	69730											
AGAP1	116987	broad.mit.edu	37	chr2	236659003	236659003	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttctgttccagatgccAtaagttctgctaacccgagg	10	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236659003	G	G	236659003	3	3	61	1	0	0	0	0	1	0	0	0	366	217	8	5	566	5	AGAP1	2	236659003	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	707299	236659003	6540370	1486	69731											
IQCA1	79781	broad.mit.edu	37	chr2	237316809	237316809	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatggtcagtggaggcaTtgttcttgatcagtttgtcg	14	6	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237316809	A	A	237316809	1	1	61	0	1	0	0	0	0	0	0	0	7872	1508	52	5		5	IQCA1	2	237316809	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	657806	237316809	5882564	1487	69732											
CXCR7	57007	broad.mit.edu	37	chr2	237490011	237490011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggccctgcatgtcacacaGtgcctgtcgctggtgcactg	12	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237490011	T	T	237490011	3	4	61	1	0	0	0	0	1	0	0	0	4129	1020	36	3	905	3	CXCR7	2	237490011	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	173202	237490011	5709362	1488	69733											
COL6A3	1293	broad.mit.edu	37	chr2	238243552	238243552	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgaaagatagatcagagcGtgaagataaaaaataaaatc	8	4	1	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238243552	C	C	238243552	1	2	61	0	1	0	0	0	0	0	0	0	3733	1160	40	4		4	COL6A3	2	238243552	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	753541	238243552	4955821	1489	69734											
COL6A3	1293	broad.mit.edu	37	chr2	238257321	238257321	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctccctaagagtgggaaaGagatgtgactgtaggtcgcc	13	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238257321	A	A	238257321	1	1	61	0	1	0	0	0	0	0	0	0	3733	957	33	4		4	COL6A3	2	238257321	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13769	238257321	4942052	1490	69735											
COL6A3	1293	broad.mit.edu	37	chr2	238287348	238287348	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggggctgaatcagctgctGaggcaaagctggcagggagc	17	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238287348	C	C	238287348	3	2	61	1	0	0	0	0	1	0	0	0	3733	1299	45	4	7308	4	COL6A3	2	238287348	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30027	238287348	4912025	1491	69736											
COL6A3	1293	broad.mit.edu	37	chr2	238289978	238289978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaataaaattcaggcctcaCagtgtctgcatactgggcca	9	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238289978	A	A	238289978	3	1	61	1	0	0	0	0	1	0	0	0	3733	478	17	3	8263	3	COL6A3	2	238289978	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2630	238289978	4909395	1492	69737											
RAB17	64284	broad.mit.edu	37	chr2	238494768	238494768	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggctgggggcagccctGggctggggggtcctgtgtgc	22	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238494768	A	A	238494768	2	1	61	1	0	0	0	0	0	0	0	1	13010	1335	47	4		4	RAB17	2	238494768	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	204790	238494768	4704605	1493	69738											
PER2	8864	broad.mit.edu	37	chr2	239160465	239160465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacacagcatatgcagcGgggtgggggtggggggcatg	21	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239160465	T	T	239160465	1	4	61	0	1	0	0	0	0	0	0	0	11824	1131	39	1		1	PER2	2	239160465	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	665697	239160465	4038908	1494	69739											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239246850	239246850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtcaagctctaaggaggGgaatcatgtggaggctgaga	15	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239246850	T	T	239246850	1	4	61	0	1	0	0	0	0	0	0	0	16564	1247	43	2		2	TRAF3IP1	2	239246850	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	86385	239246850	3952523	1495	69740											
PRR21	643905	broad.mit.edu	37	chr2	240981395	240981395	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggatgaagaggcatggatGaagggccgtgggtgaagaga	19	3	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240981395	T	T	240981395	3	4	61	1	0	0	0	0	1	0	0	0	12698	1281	45	3	167	3	PRR21	2	240981395	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1734545	240981395	2217978	1496	69741											
ANKMY1	51281	broad.mit.edu	37	chr2	241469379	241469381	+	Intron	DEL	GAG	-	-													gaggagatagaggaaaggaaGaggaggaggaggaagaggaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	241469381	-	-	241469379	6	5	61	0	1	1	0	1	0	0	0	0	634	957	33	0		0	ANKMY1	2	241469379	Intron	DEL	GAG	TCGA-17-Z031-01A-01W-0746-08	487984	241469379	1729994	1497	69742											
RNPEPL1	57140	broad.mit.edu	37	chr2	241514578	241514578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgagcagccccctgcccGggacggccctgctgccatct	13	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241514578	T	T	241514578	1	4	61	0	1	0	0	0	0	0	0	0	13621	1131	39	1		1	RNPEPL1	2	241514578	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45199	241514578	1684795	1498	69743											
PASK	23178	broad.mit.edu	37	chr2	242076536	242076536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactgatggtgcagaacacCcagacagatgcccggtagcc	11	14	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242076536	A	A	242076536	3	1	61	1	0	0	0	0	1	0	0	0	11566	624	22	2	2999	2	PASK	2	242076536	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	561958	242076536	1122837	1499	69744											
ANO7	50636	broad.mit.edu	37	chr2	242162555	242162555	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagaggcacctgcccagccAacactcagccctggctgcgc	10	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242162555	T	T	242162555	1	4	61	0	1	0	0	0	0	0	0	0	702	145	5	5		5	ANO7	2	242162555	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	86019	242162555	1036818	1500	69745											
ING5	84289	broad.mit.edu	37	chr2	242662729	242662729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttctcccagtctgctgGgtgttgcgctgctggcctcc	12	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242662729	T	T	242662729	1	4	61	0	1	0	0	0	0	0	0	0	7809	1247	43	2		2	ING5	2	242662729	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	500174	242662729	536644	1501	69746											
C2orf85	285093	broad.mit.edu	37	chr2	242815135	242815135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctgcatcaccatccccttCgcagtcttcgatgtcataaa	7	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242815135	A	A	242815135	3	1	61	1	0	0	0	0	1	0	0	0	2222	883	31	3	1434	3	C2orf85	2	242815135	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	152406	242815135	384238	1502	69747											
CHL1	10752	broad.mit.edu	37	chr3	424321	424321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggagaagtcagcctagcCagccgtcagaccatcatgaa	11	11	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	424321	A	A	424321	3	1	61	1	0	0	0	0	1	0	0	0	3380	595	21	2	2205	2	CHL1	3	424321	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08		424321	197598109	1503	69748											
CHL1	10752	broad.mit.edu	37	chr3	443448	443448	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagcttaagtgaacaaaAaggtgtttattcttaataaa	7	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	443448	T	T	443448	1	4	61	0	1	0	0	0	0	0	0	0	3380	29	1	5		5	CHL1	3	443448	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19127	443448	197578982	1504	69749											
CHL1	10752	broad.mit.edu	37	chr3	447494	447494	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaatagaaacatgctggCcgaagatttcatccagaagt	10	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	447494	A	A	447494	1	1	61	0	1	0	0	0	0	0	0	0	3380	754	26	3		3	CHL1	3	447494	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4046	447494	197574936	1505	69750											
CNTN4	152330	broad.mit.edu	37	chr3	2389059	2389060	+	Intron	INS	-	ATGG	ATGG													tccactagcaaaagaagccaINSatggatgactccaaaggcta					rs144545653		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATGG	2389060	ATGG	ATGG	2389059	6	5	61	0	1	1	1	0	0	0	0	0	3675	145	5	0		0	CNTN4	3	2389059	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1941565	2389059	195633371	1506	69751											
CNTN4	152330	broad.mit.edu	37	chr3	2967492	2967492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaattattttcaatatttGgttaacctgtaaaaatgtgt	6	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2967492	T	T	2967492	1	4	61	0	1	0	0	0	0	0	0	0	3675	1363	47	2		2	CNTN4	3	2967492	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	578433	2967492	195054938	1507	69752											
IL5RA	3568	broad.mit.edu	37	chr3	3137211	3137211	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaatccacccacacttctCaaggcatttctaagatacgc	4	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3137211	G	G	3137211	1	3	61	0	1	0	0	0	0	0	0	0	7770	841	29	4		4	IL5RA	3	3137211	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	169719	3137211	194885219	1508	69753											
SUMF1	285362	broad.mit.edu	37	chr3	3913308	3913308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaaaatcatgagcagtgCcaactctgtgtggtgccaac	9	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3913308	A	A	3913308	1	1	61	0	1	0	0	0	0	0	0	0	15503	754	26	3		3	SUMF1	3	3913308	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	776097	3913308	194109122	1509	69754											
SUMF1	285362	broad.mit.edu	37	chr3	4024739	4024739	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaaactcatagtgcagcaTgaaatttttatcttttatcc	6	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4024739	A	A	4024739	1	1	61	0	1	0	0	0	0	0	0	0	15503	1479	51	5		5	SUMF1	3	4024739	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	111431	4024739	193997691	1510	69755											
SUMF1	285362	broad.mit.edu	37	chr3	4418015	4418015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttagtgacatgacttaccCtatggcacatgtaggatcca	9	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4418015	A	A	4418015	3	1	61	1	0	0	0	0	1	0	0	0	15503	695	24	2	119	2	SUMF1	3	4418015	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	393276	4418015	193604415	1511	69756											
ITPR1	3708	broad.mit.edu	37	chr3	4647381	4647381	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggtccatgtaccatttctCttgcaacttctgtaaatttg	7	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4647381	A	A	4647381	1	1	61	0	1	0	0	0	0	0	0	0	7990	928	32	3		3	ITPR1	3	4647381	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	229366	4647381	193375049	1512	69757											
ITPR1	3708	broad.mit.edu	37	chr3	4649247	4649247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagtgctgactaaatggaAgactggaggtttattattgc	11	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4649247	T	T	4649247	1	4	61	0	1	0	0	0	0	0	0	0	7990	87	3	5		5	ITPR1	3	4649247	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1866	4649247	193373183	1513	69758											
ITPR1	3708	broad.mit.edu	37	chr3	4825354	4825354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcacagcacgccgtgatGggatggagcaagcctcgtgg	16	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4825354	T	T	4825354	1	4	61	0	1	0	0	0	0	0	0	0	7990	1363	47	2		2	ITPR1	3	4825354	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	176107	4825354	193197076	1514	69759											
GRM7	2917	broad.mit.edu	37	chr3	6903105	6903105	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaggaagctgctccgcgtCctgactttgatgaagttccc	11	12	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6903105	A	A	6903105	2	1	61	1	0	0	0	0	0	0	0	1	6868	842	30	3		3	GRM7	3	6903105	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2077751	6903105	191119325	1515	69760											
GRM7	2917	broad.mit.edu	37	chr3	7333097	7333097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagtaggtcatccttttgCtgtggcctagtggtgccaag	14	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7333097	A	A	7333097	1	1	61	0	1	0	0	0	0	0	0	0	6868	812	28	3		3	GRM7	3	7333097	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	429992	7333097	190689333	1516	69761											
GRM7	2917	broad.mit.edu	37	chr3	7340143	7340143	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggaataattagatatTtgtacgtgtactataaagag	10	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7340143	G	G	7340143	1	3	61	0	1	0	0	0	0	0	0	0	6868	1856	64	5		5	GRM7	3	7340143	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	7046	7340143	190682287	1517	69762											
GRM7	2917	broad.mit.edu	37	chr3	7340551	7340551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgttaatatgcatgttgCaattttaggagagagaaaga	10	2	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7340551	A	A	7340551	1	1	61	0	1	0	0	0	0	0	0	0	6868	725	25	3		3	GRM7	3	7340551	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	408	7340551	190681879	1518	69763											
GRM7	2917	broad.mit.edu	37	chr3	7620674	7620674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaaatcagtaacagctcCcagactcataagcccaacat	5	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7620674	A	A	7620674	3	1	61	1	0	0	0	0	1	0	0	0	6868	623	22	2	2111	2	GRM7	3	7620674	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	280123	7620674	190401756	1519	69764											
GRM7	2917	broad.mit.edu	37	chr3	7782002	7782002	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatttctacctttgcaaacAgggttattactgcaactgac	6	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7782002	T	T	7782002	1	4	61	0	1	0	0	0	0	0	0	0	6868	203	7	5		5	GRM7	3	7782002	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	161328	7782002	190240428	1520	69765											
SRGAP3	9901	broad.mit.edu	37	chr3	9036364	9036364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggggctcaggaccctgGggtcctagcctcagatccac	14	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9036364	T	T	9036364	1	4	61	0	1	0	0	0	0	0	0	0	15265	1247	43	2		2	SRGAP3	3	9036364	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1254362	9036364	188986066	1521	69766											
SRGAP3	9901	broad.mit.edu	37	chr3	9101814	9101814	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagagctgtggctacccgaGaatgtcaggtaaagacaaag	12	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9101814	C	C	9101814	1	2	61	0	1	0	0	0	0	0	0	0	15265	957	33	4		4	SRGAP3	3	9101814	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	65450	9101814	188920616	1522	69767											
SRGAP3	9901	broad.mit.edu	37	chr3	9106199	9106199	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcttctcctcctgcttctCagcctccttcagcttgcttt	5	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9106199	A	A	9106199	4	1	61	1	0	0	0	0	0	1	0	0	15265	835	29	3	2853	3	SRGAP3	3	9106199	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4385	9106199	188916231	1523	69768											
LHFPL4	375323	broad.mit.edu	37	chr3	9542782	9542782	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggaggaggaagaggctGggacagggtaacaaggctta	18	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9542782	T	T	9542782	1	4	61	0	1	0	0	0	0	0	0	0	8839	1363	47	2		2	LHFPL4	3	9542782	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	436583	9542782	188479648	1524	69769											
CPNE9	151835	broad.mit.edu	37	chr3	9771458	9771458	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagaggcacctggaaccCtggacttcactgggagggcc	14	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9771458	A	A	9771458	1	1	61	0	1	0	0	0	0	0	0	0	3851	696	24	2		2	CPNE9	3	9771458	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	228676	9771458	188250972	1525	69770											
OGG1	4968	broad.mit.edu	37	chr3	9792631	9792631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtgccttgggctcaggtGgagggagcaaagtcctgcac	15	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9792631	T	T	9792631	3	4	61	1	0	0	0	0	1	0	0	0	10940	1357	47	2	146	2	OGG1	3	9792631	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21173	9792631	188229799	1526	69771											
RPUSD3	285367	broad.mit.edu	37	chr3	9880781	9880781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggacagtgcccacacGggcagagtacatgtggtccc	13	14	0	1	rs146799821	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9880781	A	A	9880781	3	1	61	1	0	0	0	0	1	0	0	0	13779	1116	39	4	264	4	RPUSD3	3	9880781	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	88150	9880781	188141649	1527	69772											
IL17RE	132014	broad.mit.edu	37	chr3	9945894	9945894	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacattttgagggaccaccTaggctgagcaagtgggactt	13	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9945894	G	G	9945894	1	3	61	0	1	0	0	0	0	0	0	0	7713	1537	53	5		5	IL17RE	3	9945894	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	65113	9945894	188076536	1528	69773											
CIDEC	63924	broad.mit.edu	37	chr3	10035779	10035783	+	Intron	DEL	AGTCT	-	-													aatgagagttggggaagagaAgtctgatctgacattccaaa					rs35714562		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10035783	-	-	10035779	6	5	61	0	1	1	0	1	0	0	0	0	3458	87	3	0		0	CIDEC	3	10035779	Intron	DEL	AGTCT	TCGA-17-Z031-01A-01W-0746-08	89885	10035779	187986651	1529	69774											
ATP2B2	491	broad.mit.edu	37	chr3	10428294	10428294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacacacatgtgcatacaCacatggccatacacctaggg	7	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10428294	A	A	10428294	1	1	61	0	1	0	0	0	0	0	0	0	1144	493	17	3		3	ATP2B2	3	10428294	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	392515	10428294	187594136	1530	69775											
ATP2B2	491	broad.mit.edu	37	chr3	10689069	10689069	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaacaggccctagctctctGctttattttgttcggttttt	7	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10689069	C	C	10689069	1	2	61	0	1	0	0	0	0	0	0	0	1144	1334	46	4		4	ATP2B2	3	10689069	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	260775	10689069	187333361	1531	69776											
ATP2B2	491	broad.mit.edu	37	chr3	10689619	10689619	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaattccacacacaatGgtcttcatcttctgattcca	6	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10689619	A	A	10689619	1	1	61	0	1	0	0	0	0	0	0	0	1144	1363	47	4		4	ATP2B2	3	10689619	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	550	10689619	187332811	1532	69777											
SLC6A11	6538	broad.mit.edu	37	chr3	10971058	10971058	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcgggccgcacggggtgaAgtgggtgtgtgacgtcaact	18	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10971058	C	C	10971058	1	2	61	0	1	0	0	0	0	0	0	0	14788	87	3	5		5	SLC6A11	3	10971058	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	281439	10971058	187051372	1533	69778											
SYN2	6854	broad.mit.edu	37	chr3	12067513	12067513	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaatgccatgtgatagaaaGagcttataggtgctattatt	11	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12067513	A	A	12067513	1	1	61	0	1	0	0	0	0	0	0	0	15560	957	33	4		4	SYN2	3	12067513	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1096455	12067513	185954917	1534	69779											
SYN2	6854	broad.mit.edu	37	chr3	12208622	12208622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacccctgggctacttgtGggagaagcaggtgtggaaag	16	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12208622	T	T	12208622	1	4	61	0	1	0	0	0	0	0	0	0	15560	1363	47	2		2	SYN2	3	12208622	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	141109	12208622	185813808	1535	69780											
RAF1	5894	broad.mit.edu	37	chr3	12641797	12641797	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttaatagacaagacaaaCagaagccacacaaggataag	9	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12641797	T	T	12641797	1	4	61	0	1	0	0	0	0	0	0	0	13110	493	17	4		4	RAF1	3	12641797	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	433175	12641797	185380633	1536	69781											
TMEM40	55287	broad.mit.edu	37	chr3	12785492	12785492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcatcattgctctctgCgggtaacaaacacaagctgt	8	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12785492	A	A	12785492	1	1	61	0	1	0	0	0	0	0	0	0	16286	783	27	3		3	TMEM40	3	12785492	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	143695	12785492	185236938	1537	69782											
CAND2	23066	broad.mit.edu	37	chr3	12854739	12854739	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcattcctcatcctgccCcacaggtgccccaaggaaat	7	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12854739	T	T	12854739	1	4	61	0	1	0	0	0	0	0	0	0	2642	638	22	4		4	CAND2	3	12854739	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	69247	12854739	185167691	1538	69783											
XPC	7508	broad.mit.edu	37	chr3	14206561	14206561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcctactttccccagcCcgtctagctaactcctatca	4	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14206561	A	A	14206561	1	1	61	0	1	0	0	0	0	0	0	0	17568	638	22	2		2	XPC	3	14206561	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1351822	14206561	183815869	1539	69784											
SLC6A6	6533	broad.mit.edu	37	chr3	14526392	14526392	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagagagtcaagtacctgctGaccccaagggaacccaaccg	10	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14526392	T	T	14526392	2	4	61	1	0	0	0	0	0	0	0	1	14802	1277	45	3		3	SLC6A6	3	14526392	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	319831	14526392	183496038	1540	69785											
C3orf20	84077	broad.mit.edu	37	chr3	14746196	14746196	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtccaggacttgatacaGcctaaatgtttccttgggcc	10	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14746196	A	A	14746196	1	1	61	0	1	0	0	0	0	0	0	0	2235	986	34	4		4	C3orf20	3	14746196	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	219804	14746196	183276234	1541	69786											
FGD5	152273	broad.mit.edu	37	chr3	14939190	14939190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaattggtgagcagtccctGgacccccgggttccactttt	10	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14939190	T	T	14939190	1	4	61	0	1	0	0	0	0	0	0	0	5893	1363	47	2		2	FGD5	3	14939190	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	192994	14939190	183083240	1542	69787											
ZFYVE20	64145	broad.mit.edu	37	chr3	15116213	15116213	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgcacttcatccatgcgGcccgcggccttggcctgcct	12	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15116213	A	A	15116213	2	1	61	1	0	0	0	0	0	0	0	1	17792	1190	42	4		4	ZFYVE20	3	15116213	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	177023	15116213	182906217	1543	69788											
COLQ	8292	broad.mit.edu	37	chr3	15505645	15505646	+	Intron	INS	-	G	G													atgaggagtatgaggaaggaINSggggtcagggatggaagagg					rs138820065	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15505646	G	G	15505645	6	5	61	0	1	1	1	0	0	0	0	0	3745	319	11	0		0	COLQ	3	15505645	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	389432	15505645	182516785	1544	69789											
COLQ	8292	broad.mit.edu	37	chr3	15515465	15515465	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgcttggaggacctgatAtttttattgaggcctatttt	10	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15515465	G	G	15515465	1	3	61	0	1	0	0	0	0	0	0	0	3745	464	16	5		5	COLQ	3	15515465	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9820	15515465	182506965	1545	69790											
RFTN1	23180	broad.mit.edu	37	chr3	16532965	16532965	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagcagggaggccacgTgggatatcccccagtgttgt	16	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16532965	C	C	16532965	1	2	61	0	1	0	0	0	0	0	0	0	13366	1711	59	5		5	RFTN1	3	16532965	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1017500	16532965	181489465	1546	69791											
DAZL	1618	broad.mit.edu	37	chr3	16633460	16633460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaacagttaattaaatgCtctaagaaatctcaaaatac	4	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16633460	A	A	16633460	1	1	61	0	1	0	0	0	0	0	0	0	4279	812	28	3		3	DAZL	3	16633460	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	100495	16633460	181388970	1547	69792											
PLCL2	23228	broad.mit.edu	37	chr3	17034009	17034009	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggtgagataggtgagaAggccagagtgtgggagaggc	20	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17034009	T	T	17034009	1	4	61	0	1	0	0	0	0	0	0	0	12135	87	3	5		5	PLCL2	3	17034009	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	400549	17034009	180988421	1548	69793											
TBC1D5	9779	broad.mit.edu	37	chr3	17385803	17385803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcatgagtgaactcccatTcacaattgcttcaaagagaa	6	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17385803	A	A	17385803	1	1	61	0	1	0	0	0	0	0	0	0	15745	1798	62	5		5	TBC1D5	3	17385803	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	351794	17385803	180636627	1549	69794											
SATB1	6304	broad.mit.edu	37	chr3	18436474	18436474	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattgataaagatttctaaCcatttcctaaattaaaaaag	4	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18436474	T	T	18436474	1	4	61	0	1	0	0	0	0	0	0	0	13965	522	18	4		4	SATB1	3	18436474	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1050671	18436474	179585956	1550	69795											
KCNH8	131096	broad.mit.edu	37	chr3	19246013	19246013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttatcaatttttctttcCttctaagattcatattttag	4	6	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19246013	A	A	19246013	1	1	61	0	1	0	0	0	0	0	0	0	8108	696	24	2		2	KCNH8	3	19246013	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	809539	19246013	178776417	1551	69796											
KCNH8	131096	broad.mit.edu	37	chr3	19470316	19470316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcattgcttgccttctgGgttatcaaggtttactccat	9	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19470316	T	T	19470316	1	4	61	0	1	0	0	0	0	0	0	0	8108	1247	43	2		2	KCNH8	3	19470316	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	224303	19470316	178552114	1552	69797											
KCNH8	131096	broad.mit.edu	37	chr3	19554502	19554502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatcaacaagcgactccCatccattgtggaagatgagg	9	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19554502	A	A	19554502	3	1	61	1	0	0	0	0	1	0	0	0	8108	594	21	2	2170	2	KCNH8	3	19554502	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	84186	19554502	178467928	1553	69798											
ZNF385D	79750	broad.mit.edu	37	chr3	21467209	21467209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggagggaggaaagaaGggagggagagaaggaggtgg	24	0	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21467209	T	T	21467209	1	4	61	0	1	0	0	0	0	0	0	0	18004	1015	35	2		2	ZNF385D	3	21467209	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1912707	21467209	176555221	1554	69799											
ZNF385D	79750	broad.mit.edu	37	chr3	21478514	21478514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacagcaaccttgcatagCgaacagtaaagaagccgttt	9	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21478514	A	A	21478514	2	1	61	1	0	0	0	0	0	0	0	1	18004	755	27	3		3	ZNF385D	3	21478514	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11305	21478514	176543916	1555	69800											
ZNF385D	79750	broad.mit.edu	37	chr3	21505102	21505102	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggccctctagaatggctgGctcgctttctctcacccaag	10	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21505102	C	C	21505102	1	2	61	0	1	0	0	0	0	0	0	0	18004	1218	42	4		4	ZNF385D	3	21505102	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26588	21505102	176517328	1556	69801											
ZNF385D	79750	broad.mit.edu	37	chr3	21546696	21546696	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtttgttttttgaatcTgttaagtattgatgcttgaa	9	2	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21546696	A	A	21546696	1	1	61	0	1	0	0	0	0	0	0	0	18004	1595	55	5		5	ZNF385D	3	21546696	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	41594	21546696	176475734	1557	69802											
ZNF385D	79750	broad.mit.edu	37	chr3	21700477	21700477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaatgtttaaaggagtaCtaatcaactatgtcaacttc	7	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21700477	A	A	21700477	1	1	61	0	1	0	0	0	0	0	0	0	18004	580	20	3		3	ZNF385D	3	21700477	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	153781	21700477	176321953	1558	69803											
ZNF385D	79750	broad.mit.edu	37	chr3	21706527	21706527	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcatgtaccacctgtgaAgaccagagcaaagggagcaa	12	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21706527	C	C	21706527	1	2	61	0	1	0	0	0	0	0	0	0	18004	87	3	5		5	ZNF385D	3	21706527	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6050	21706527	176315903	1559	69804											
ZNF385D	79750	broad.mit.edu	37	chr3	22270839	22270839	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacagtcacattgttctgtGaccccaacttaggttgtggt	9	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22270839	T	T	22270839	1	4	61	0	1	0	0	0	0	0	0	0	18004	1305	45	3		3	ZNF385D	3	22270839	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	564312	22270839	175751591	1560	69805											
THRB	7068	broad.mit.edu	37	chr3	24193858	24193858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgggctaagctctgtGcttgtggacccagggcaatt	15	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24193858	T	T	24193858	1	4	61	0	1	0	0	0	0	0	0	0	15998	1334	46	3		3	THRB	3	24193858	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1923019	24193858	173828572	1561	69806											
THRB	7068	broad.mit.edu	37	chr3	24299805	24299805	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtctgctgcttgattcaCtcccctgggcaggcctgatt	12	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24299805	A	A	24299805	1	1	61	0	1	0	0	0	0	0	0	0	15998	580	20	3		3	THRB	3	24299805	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	105947	24299805	173722625	1562	69807											
RARB	5915	broad.mit.edu	37	chr3	25216070	25216070	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccccgtcgccggcaagtaAgtcctgctggaatttgctct	10	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25216070	C	C	25216070	1	2	61	0	1	0	0	0	0	0	0	0	13161	87	3	5		5	RARB	3	25216070	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	916265	25216070	172806360	1563	69808											
NEK10	152110	broad.mit.edu	37	chr3	27183102	27183102	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataaattttgtagttagtcAagttctctttcaaaagttac	6	5	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27183102	C	C	27183102	1	2	61	0	1	0	0	0	0	0	0	0	10417	145	5	5		5	NEK10	3	27183102	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1967032	27183102	170839328	1564	69809											
NEK10	152110	broad.mit.edu	37	chr3	27233814	27233815	+	Intron	DNP	CC	AA	AA													taaagggtcaaggttaaactCcactgtgtgtccactatggt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	27233815	AA	AA	27233814	1	1	61	0	1	0	0	0	0	0	0	0	10417	870	30	3		3	NEK10	3	27233814	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	50712	27233814	170788616	1565	69810											
RBMS3	27303	broad.mit.edu	37	chr3	29343590	29343590	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcactgcagccttgagcTtctgggttcaagtgatcttc	11	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29343590	G	G	29343590	1	3	61	0	1	0	0	0	0	0	0	0	13258	1624	56	5		5	RBMS3	3	29343590	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2109776	29343590	168678840	1566	69811											
TGFBR2	7048	broad.mit.edu	37	chr3	30691732	30691732	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctctctctccctctccCctcgcttccaatgaatctct	2	19	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30691732	T	T	30691732	1	4	61	0	1	0	0	0	0	0	0	0	15945	638	22	4		4	TGFBR2	3	30691732	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1348142	30691732	167330698	1567	69812											
GADL1	339896	broad.mit.edu	37	chr3	30819812	30819812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagatttatcttagaatGcaatgaaatacttttaaaac	4	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30819812	T	T	30819812	1	4	61	0	1	0	0	0	0	0	0	0	6245	1334	46	3		3	GADL1	3	30819812	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	128080	30819812	167202618	1568	69813											
GADL1	339896	broad.mit.edu	37	chr3	30901552	30901552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccattattgaccttcctGctttcttcctccagaaatga	4	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30901552	T	T	30901552	1	4	61	0	1	0	0	0	0	0	0	0	6245	1334	46	3		3	GADL1	3	30901552	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	81740	30901552	167120878	1569	69814											
GADL1	339896	broad.mit.edu	37	chr3	30903340	30903340	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggacaaaatgcatcactatCccagcttcagatggcacatc	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30903340	T	T	30903340	1	4	61	0	1	0	0	0	0	0	0	0	6245	870	30	4		4	GADL1	3	30903340	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1788	30903340	167119090	1570	69815											
STT3B	201595	broad.mit.edu	37	chr3	31618117	31618117	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttaacaaatttttctgtgGcttattatccagtattcagt	6	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31618117	A	A	31618117	1	1	61	0	1	0	0	0	0	0	0	0	15452	1218	42	4		4	STT3B	3	31618117	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	714777	31618117	166404313	1571	69816											
OSBPL10	114884	broad.mit.edu	37	chr3	31794586	31794586	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtccctgctaagttccCctctgagtcaggggatcagt	11	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31794586	T	T	31794586	1	4	61	0	1	0	0	0	0	0	0	0	11369	638	22	4		4	OSBPL10	3	31794586	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	176469	31794586	166227844	1572	69817											
OSBPL10	114884	broad.mit.edu	37	chr3	31936915	31936915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggattacagacatgagcCaccgcacccagcccagactt	9	15	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31936915	A	A	31936915	1	1	61	0	1	0	0	0	0	0	0	0	11369	609	21	2		2	OSBPL10	3	31936915	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	142329	31936915	166085515	1573	69818											
DYNC1LI1	51143	broad.mit.edu	37	chr3	32586318	32586318	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaatgattaaagtcagCcaagacattttgtatttgaa	6	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32586318	G	G	32586318	1	3	61	0	1	0	0	0	0	0	0	0	4884	754	26	4		4	DYNC1LI1	3	32586318	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	649403	32586318	165436112	1574	69819											
CNOT10	25904	broad.mit.edu	37	chr3	32761609	32761609	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatattttctctacagtccGcaccctctctctttcttaaa	2	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32761609	T	T	32761609	3	4	61	1	0	0	0	0	1	0	0	0	3650	1087	38	3	778	3	CNOT10	3	32761609	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	175291	32761609	165260821	1575	69820											
ARPP21	10777	broad.mit.edu	37	chr3	35729177	35729177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctatgcaaaatgggagCcagacagagatgattaaacc	9	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35729177	A	A	35729177	1	1	61	0	1	0	0	0	0	0	0	0	982	754	26	3		3	ARPP21	3	35729177	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2967568	35729177	162293253	1576	69821											
ARPP21	10777	broad.mit.edu	37	chr3	35748563	35748563	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataactctagtattgataaaGaagacaatcaggttggttct	8	5	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35748563	C	C	35748563	3	2	61	1	0	0	0	0	1	0	0	0	982	943	33	4	827	4	ARPP21	3	35748563	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19386	35748563	162273867	1577	69822											
ARPP21	10777	broad.mit.edu	37	chr3	35785526	35785527	+	Intron	DNP	GG	TT	TT													tggtgaatcttgtactctttGgatgagtgtccaagcttggc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	35785527	TT	TT	35785526	1	4	61	0	1	0	0	0	0	0	0	0	982	1363	47	2		2	ARPP21	3	35785526	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	36963	35785526	162236904	1578	69823											
STAC	6769	broad.mit.edu	37	chr3	36439935	36439935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggaaggaaggaaGgaaggaaggaaggaaggaag	21	0	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36439935	T	T	36439935	1	4	61	0	1	0	0	0	0	0	0	0	15357	1015	35	2		2	STAC	3	36439935	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	654409	36439935	161582495	1579	69824											
STAC	6769	broad.mit.edu	37	chr3	36573051	36573051	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaccagacagagtaccAgatgtgatctagagacctaa	9	8	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36573051	C	C	36573051	1	2	61	0	1	0	0	0	0	0	0	0	15357	203	7	5		5	STAC	3	36573051	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	133116	36573051	161449379	1580	69825											
DCLK3	85443	broad.mit.edu	37	chr3	36759400	36759400	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggctgagacatgacatgttGacagtccaactctgcaccag	10	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36759400	T	T	36759400	1	4	61	0	1	0	0	0	0	0	0	0	4326	1305	45	3		3	DCLK3	3	36759400	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	186349	36759400	161263030	1581	69826											
DCLK3	85443	broad.mit.edu	37	chr3	36767928	36767928	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaattatcaacttgtctgcAggcatacaccctcacatctc	5	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36767928	T	T	36767928	1	4	61	0	1	0	0	0	0	0	0	0	4326	203	7	5		5	DCLK3	3	36767928	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8528	36767928	161254502	1582	69827											
DCLK3	85443	broad.mit.edu	37	chr3	36768151	36768151	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgccagtgagcttacatctCcataagcagcatgtgtctta	8	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36768151	T	T	36768151	1	4	61	0	1	0	0	0	0	0	0	0	4326	870	30	4		4	DCLK3	3	36768151	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	223	36768151	161254279	1583	69828											
MLH1	4292	broad.mit.edu	37	chr3	37070415	37070415	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaagaaattaatgagcaggGacatgagggtacgtaaacgc	14	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37070415	A	A	37070415	3	1	61	1	0	0	0	0	1	0	0	0	9710	1174	41	4	1600	4	MLH1	3	37070415	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	302264	37070415	160952015	1584	69829											
LRRFIP2	9209	broad.mit.edu	37	chr3	37133153	37133153	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaagcagagaaatcaaagTacaaaaacataactcccact	4	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37133153	A	A	37133153	1	1	61	0	1	0	0	0	0	0	0	0	9115	1653	57	5		5	LRRFIP2	3	37133153	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	62738	37133153	160889277	1585	69830											
ITGA9	3680	broad.mit.edu	37	chr3	37659581	37659581	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttttttccccatctttgtgGttttatgtacctttggtctt	7	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37659581	C	C	37659581	1	2	61	0	1	0	0	0	0	0	0	0	7953	1276	44	4		4	ITGA9	3	37659581	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	526428	37659581	160362849	1586	69831											
OXSR1	9943	broad.mit.edu	37	chr3	38294394	38294394	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagctaaaccacaaccctGgaagaggcggcctaaggaga	11	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38294394	T	T	38294394	1	4	61	0	1	0	0	0	0	0	0	0	11430	1363	47	2		2	OXSR1	3	38294394	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	634813	38294394	159728036	1587	69832											
SLC22A14	9389	broad.mit.edu	37	chr3	38350360	38350360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcaactgtccagagcaggTggggacacccagcaaggctg	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38350360	A	A	38350360	1	1	61	0	1	0	0	0	0	0	0	0	14558	1711	59	5		5	SLC22A14	3	38350360	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	55966	38350360	159672070	1588	69833											
EXOG	9941	broad.mit.edu	37	chr3	38565339	38565339	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtatttttcagaaaaaatTtgcgaactgttagcacaaat	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38565339	G	G	38565339	1	3	61	0	1	0	0	0	0	0	0	0	5354	1856	64	5		5	EXOG	3	38565339	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	214979	38565339	159457091	1589	69834											
SCN5A	6331	broad.mit.edu	37	chr3	38594239	38594239	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcctgcttgagaccccCcagagattcctgaccctact	6	17	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38594239	T	T	38594239	1	4	61	0	1	0	0	0	0	0	0	0	14035	638	22	4		4	SCN5A	3	38594239	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28900	38594239	159428191	1590	69835											
SCN5A	6331	broad.mit.edu	37	chr3	38640459	38640459	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgagggcccgctgccgtGctcctggctcctcgaagcca	13	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38640459	A	A	38640459	3	1	61	1	0	0	0	0	1	0	0	0	14035	1319	46	4	4141	4	SCN5A	3	38640459	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46220	38640459	159381971	1591	69836											
SCN10A	6336	broad.mit.edu	37	chr3	38739454	38739454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaactgagtggcctctgGgtcaaacttctcccaggtct	9	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38739454	T	T	38739454	3	4	61	1	0	0	0	0	1	0	0	0	14025	1232	43	2	617	2	SCN10A	3	38739454	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98995	38739454	159282976	1592	69837											
SCN10A	6336	broad.mit.edu	37	chr3	38797614	38797614	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catggcaggaacagacacctCgggtcacccccactcattca	8	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38797614	T	T	38797614	1	4	61	0	1	0	0	0	0	0	0	0	14025	899	31	4		4	SCN10A	3	38797614	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	58160	38797614	159224816	1593	69838											
SCN10A	6336	broad.mit.edu	37	chr3	38833315	38833315	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagattagtctgaggtgaAtccaaaccacctgtgtgttg	10	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38833315	C	C	38833315	1	2	61	0	1	0	0	0	0	0	0	0	14025	116	4	5		5	SCN10A	3	38833315	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	35701	38833315	159189115	1594	69839											
SCN11A	11280	broad.mit.edu	37	chr3	38889099	38889099	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcgacatcatcagagcaaAgaggagagtcctgattcctc	10	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38889099	T	T	38889099	3	4	61	1	0	0	0	0	1	0	0	0	14026	72	3	5	917	5	SCN11A	3	38889099	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	55784	38889099	159133331	1595	69840											
SCN11A	11280	broad.mit.edu	37	chr3	38941498	38941498	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgttccagcctcggcgaaAgtagtggtagggatcgagcg	15	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38941498	C	C	38941498	3	2	61	1	0	0	0	0	1	0	0	0	14026	72	3	5	3522	5	SCN11A	3	38941498	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	52399	38941498	159080932	1596	69841											
TTC21A	199223	broad.mit.edu	37	chr3	39159675	39159675	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagactcagaaggtgatcCttgaaacagaatcaaggagg	12	6	2	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39159675	T	T	39159675	1	4	61	0	1	0	0	0	0	0	0	0	16813	696	24	4		4	TTC21A	3	39159675	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	218177	39159675	158862755	1597	69842											
XIRP1	165904	broad.mit.edu	37	chr3	39227079	39227079	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaagggggtccttcagGggctcagaggcttgctggat	17	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39227079	T	T	39227079	2	4	61	1	0	0	0	0	0	0	0	1	17556	1219	43	2		2	XIRP1	3	39227079	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67404	39227079	158795351	1598	69843											
XIRP1	165904	broad.mit.edu	37	chr3	39228033	39228033	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggggaacatggatgatgctCtcagttgggtgcaggctctg	17	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39228033	T	T	39228033	2	4	61	1	0	0	0	0	0	0	0	1	17556	912	32	4		4	XIRP1	3	39228033	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	954	39228033	158794397	1599	69844											
MYRIP	25924	broad.mit.edu	37	chr3	40068721	40068721	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggccctcaacaggtgcaAcagagatcagcccacttccc	8	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40068721	G	G	40068721	1	3	61	0	1	0	0	0	0	0	0	0	10194	58	2	5		5	MYRIP	3	40068721	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	840688	40068721	157953709	1600	69845											
MYRIP	25924	broad.mit.edu	37	chr3	40135958	40135958	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcttctggagtaatgctgtCcacctcccctgctttgcagc	10	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40135958	A	A	40135958	1	1	61	0	1	0	0	0	0	0	0	0	10194	870	30	3		3	MYRIP	3	40135958	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	67237	40135958	157886472	1601	69846											
ZNF621	285268	broad.mit.edu	37	chr3	40573774	40573774	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcttattcggcatcagatGagtcatactggggaaaagcc	11	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40573774	T	T	40573774	3	4	61	1	0	0	0	0	1	0	0	0	18172	1290	45	3	527	3	ZNF621	3	40573774	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	437816	40573774	157448656	1602	69847											
ULK4	54986	broad.mit.edu	37	chr3	41581043	41581044	+	Intron	DEL	TG	-	-													tgtccaggttttgtgaaaacTgaagcatatacagttgggga					rs150786446		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41581044	-	-	41581043	6	5	61	0	1	1	0	1	0	0	0	0	17104	1595	55	0		0	ULK4	3	41581043	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	1007269	41581043	156441387	1603	69848											
ULK4	54986	broad.mit.edu	37	chr3	41757064	41757064	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagttaagaatgtcacctgTgaagcacagcccagagcata	11	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41757064	A	A	41757064	1	1	61	0	1	0	0	0	0	0	0	0	17104	1711	59	5		5	ULK4	3	41757064	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	176021	41757064	156265366	1604	69849											
ULK4	54986	broad.mit.edu	37	chr3	41796092	41796092	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggcaggaagtaaaataaTaactactgttttcgcattct	8	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41796092	C	C	41796092	1	2	61	0	1	0	0	0	0	0	0	0	17104	1421	49	5		5	ULK4	3	41796092	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	39028	41796092	156226338	1605	69850											
TRAK1	22906	broad.mit.edu	37	chr3	42242491	42242491	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcgacataggcaacgtcGtcctcgacaacaagaccaac	9	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42242491	A	A	42242491	3	1	61	1	0	0	0	0	1	0	0	0	16573	1145	40	4	1534	4	TRAK1	3	42242491	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	446399	42242491	155779939	1606	69851											
LYZL4	131375	broad.mit.edu	37	chr3	42445624	42445624	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggattcagtaaagctgtgggGaaaagaaaatggaagatacc	13	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42445624	T	T	42445624	1	4	61	0	1	0	0	0	0	0	0	0	9221	1189	41	3		3	LYZL4	3	42445624	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	203133	42445624	155576806	1607	69852											
LYZL4	131375	broad.mit.edu	37	chr3	42448994	42448994	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcctcctcttgacctcctAttttctaaggaaattgcact	4	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42448994	G	G	42448994	1	3	61	0	1	0	0	0	0	0	0	0	9221	464	16	5		5	LYZL4	3	42448994	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3370	42448994	155573436	1608	69853											
KBTBD5	131377	broad.mit.edu	37	chr3	42727276	42727276	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctggccgcctgcagcCcctacttccgggcgcgcttt	13	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42727276	T	T	42727276	3	4	61	1	0	0	0	0	1	0	0	0	8066	623	22	4	168	4	KBTBD5	3	42727276	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	278282	42727276	155295154	1609	69854											
CCDC13	152206	broad.mit.edu	37	chr3	42784191	42784191	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttcattaaatgggctcacAgtgaggtcccagtcaggcag	12	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42784191	T	T	42784191	1	4	61	0	1	0	0	0	0	0	0	0	2791	203	7	5		5	CCDC13	3	42784191	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	56915	42784191	155238239	1610	69855											
CYP8B1	1582	broad.mit.edu	37	chr3	42917361	42917361	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacactgttccctgggtgcCagagagctttgggaggcctt	14	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42917361	T	T	42917361	1	4	61	0	1	0	0	0	0	0	0	0	4231	609	21	4		4	CYP8B1	3	42917361	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	133170	42917361	155105069	1611	69856											
ABHD5	51099	broad.mit.edu	37	chr3	43744131	43744131	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgtgcttccaagtaccaGactctagttcccatctttgg	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43744131	T	T	43744131	1	4	61	0	1	0	0	0	0	0	0	0	85	957	33	3		3	ABHD5	3	43744131	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	826770	43744131	154278299	1612	69857											
KIF15	56992	broad.mit.edu	37	chr3	44839103	44839103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtgattacagcacttgtcGacgtgggtaatggaaaacag	12	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44839103	T	T	44839103	3	4	61	1	0	0	0	0	1	0	0	0	8347	1058	37	3	944	3	KIF15	3	44839103	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1094972	44839103	153183327	1613	69858											
KIF15	56992	broad.mit.edu	37	chr3	44869002	44869002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagaaacagaaagagacGgccaagtgtgagcagcaggt	15	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44869002	T	T	44869002	2	4	61	1	0	0	0	0	0	0	0	1	8347	1103	39	1		1	KIF15	3	44869002	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29899	44869002	153153428	1614	69859											
CDCP1	64866	broad.mit.edu	37	chr3	45132961	45132961	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagggatggcaggcccCggtcccagttgggggtcctc	18	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45132961	T	T	45132961	3	4	61	1	0	0	0	0	1	0	0	0	3123	652	23	4	825	4	CDCP1	3	45132961	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	263959	45132961	152889469	1615	69860											
FYCO1	79443	broad.mit.edu	37	chr3	46010302	46010302	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaaaatacaggcattacCtgccctaaggttagtctaaa	8	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46010302	T	T	46010302	1	4	61	0	1	0	0	0	0	0	0	0	6185	696	24	4		4	FYCO1	3	46010302	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	877341	46010302	152012128	1616	69861											
LTF	4057	broad.mit.edu	37	chr3	46484843	46484843	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acccccactctgctgtgacaGgtcacatctggctccttaga	8	15	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46484843	C	C	46484843	1	2	61	0	1	0	0	0	0	0	0	0	9166	1015	35	4		4	LTF	3	46484843	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	474541	46484843	151537587	1617	69862											
LTF	4057	broad.mit.edu	37	chr3	46497528	46497528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagagggacaaaaacaacCcatcctgaaaagtctccggt	8	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46497528	A	A	46497528	1	1	61	0	1	0	0	0	0	0	0	0	9166	638	22	2		2	LTF	3	46497528	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12685	46497528	151524902	1618	69863											
ALS2CL	259173	broad.mit.edu	37	chr3	46725216	46725216	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggttgcatacttctgccctCttcctaccctgtcctctgac	7	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46725216	T	T	46725216	1	4	61	0	1	0	0	0	0	0	0	0	551	928	32	4		4	ALS2CL	3	46725216	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	227688	46725216	151297214	1619	69864											
PTH1R	5745	broad.mit.edu	37	chr3	46939695	46939695	+	Intron	DEL	C	-	-													gtgaacgggtgcgagcctttCtcctccccaacctgaccagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46939695	-	-	46939695	6	5	61	0	1	1	0	1	0	0	0	0	12864	928	32	0		0	PTH1R	3	46939695	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	214479	46939695	151082735	1620	69865											
MAP4	4134	broad.mit.edu	37	chr3	47912299	47912299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccccaagctccctggacCcacccggcctcctccaggct	9	21	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47912299	A	A	47912299	1	1	61	0	1	0	0	0	0	0	0	0	9350	638	22	2		2	MAP4	3	47912299	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	972604	47912299	150110131	1621	69866											
FBXW12	285231	broad.mit.edu	37	chr3	48423302	48423302	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaccatacttgttactcttCagcatcactggcttcctgct	7	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48423302	A	A	48423302	3	1	61	1	0	0	0	0	1	0	0	0	5822	825	29	3	1165	3	FBXW12	3	48423302	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	511003	48423302	149599128	1622	69867											
COL7A1	1294	broad.mit.edu	37	chr3	48627953	48627953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacgggtccccaggccacCctcactcgcgttgcatctga	12	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48627953	A	A	48627953	3	1	61	1	0	0	0	0	1	0	0	0	3736	622	22	2	7409	2	COL7A1	3	48627953	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	204651	48627953	149394477	1623	69868											
CELSR3	1951	broad.mit.edu	37	chr3	48697556	48697556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatagcagtgatcatgaaGggcacggtcagatgcagtta	12	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48697556	T	T	48697556	3	4	61	1	0	0	0	0	1	0	0	0	3253	1000	35	2	7566	2	CELSR3	3	48697556	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69603	48697556	149324874	1624	69869											
ARIH2	10425	broad.mit.edu	37	chr3	48965034	48965034	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggggtctgacagcaatgaaGaggactatgacccaaattgt	12	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48965034	T	T	48965034	4	4	61	1	0	0	0	0	0	1	0	0	926	943	33	3	45	3	ARIH2	3	48965034	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	267478	48965034	149057396	1625	69870											
ARIH2	10425	broad.mit.edu	37	chr3	48998965	48998965	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttggcataatagacatgaAtgtatacagttctcaaaatg	8	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48998965	G	G	48998965	1	3	61	0	1	0	0	0	0	0	0	0	926	116	4	5		5	ARIH2	3	48998965	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	33931	48998965	149023465	1626	69871											
QRICH1	54870	broad.mit.edu	37	chr3	49081739	49081739	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatatcccccctcactcacaTgcttttcatagccaaccaca	2	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49081739	A	A	49081739	1	1	61	0	1	0	0	0	0	0	0	0	12987	1479	51	5		5	QRICH1	3	49081739	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	82774	49081739	148940691	1627	69872											
USP4	7375	broad.mit.edu	37	chr3	49373056	49373056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagacagaaatttactgtaGcagaaaagctgagattataa	9	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49373056	T	T	49373056	1	4	61	0	1	0	0	0	0	0	0	0	17198	986	34	3		3	USP4	3	49373056	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	291317	49373056	148649374	1628	69873											
BSN	8927	broad.mit.edu	37	chr3	49689788	49689788	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctccgtcgcttcaagacCattgagctcaacagcacggg	12	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49689788	A	A	49689788	2	1	61	1	0	0	0	0	0	0	0	1	1539	581	21	2		2	BSN	3	49689788	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	316732	49689788	148332642	1629	69874											
RNF123	63891	broad.mit.edu	37	chr3	49735811	49735811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatccaaggctggtgattGgtgggctctggcccagaccc	14	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49735811	T	T	49735811	1	4	61	0	1	0	0	0	0	0	0	0	13544	1363	47	2		2	RNF123	3	49735811	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46023	49735811	148286619	1630	69875											
RBM6	10180	broad.mit.edu	37	chr3	50085713	50085713	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacaaagaagttaccctGgagtatgtatcaagcctgga	11	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50085713	T	T	50085713	2	4	61	1	0	0	0	0	0	0	0	1	13252	1335	47	2		2	RBM6	3	50085713	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	349902	50085713	147936717	1631	69876											
RBM6	10180	broad.mit.edu	37	chr3	50098480	50098480	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaaatcctcaggtgactAtaagggtgatcttgaatttt	8	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50098480	G	G	50098480	1	3	61	0	1	0	0	0	0	0	0	0	13252	464	16	5		5	RBM6	3	50098480	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12767	50098480	147923950	1632	69877											
SEMA3F	6405	broad.mit.edu	37	chr3	50223738	50223738	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgccggcaggacgtccgGcacggaaaccccatcaggca	13	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50223738	T	T	50223738	2	4	61	1	0	0	0	0	0	0	0	1	14142	1190	42	3		3	SEMA3F	3	50223738	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	125258	50223738	147798692	1633	69878											
SLC38A3	10991	broad.mit.edu	37	chr3	50254782	50254782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggtcagagccttggagGggatgttggaggcatacacc	17	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50254782	T	T	50254782	1	4	61	0	1	0	0	0	0	0	0	0	14719	1247	43	2		2	SLC38A3	3	50254782	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31044	50254782	147767648	1634	69879											
HYAL2	8692	broad.mit.edu	37	chr3	50357134	50357134	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcacaaagttgcggccatGgcgggaggaagcaagtgtct	15	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50357134	C	C	50357134	3	2	61	1	0	0	0	0	1	0	0	0	7534	1348	47	4	646	4	HYAL2	3	50357134	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	102352	50357134	147665296	1635	69880											
VPRBP	9730	broad.mit.edu	37	chr3	51449799	51449799	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcataacctctattaagcacTgttcagcagaaagaaatctc	6	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51449799	C	C	51449799	1	2	61	0	1	0	0	0	0	0	0	0	17312	1595	55	5		5	VPRBP	3	51449799	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1092665	51449799	146572631	1636	69881											
VPRBP	9730	broad.mit.edu	37	chr3	51455980	51455980	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actttgccatattcctcagtCtccatctgaaatatgaatta	4	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51455980	A	A	51455980	1	1	61	0	1	0	0	0	0	0	0	0	17312	928	32	3		3	VPRBP	3	51455980	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6181	51455980	146566450	1637	69882											
TEX264	51368	broad.mit.edu	37	chr3	51727926	51727926	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctgagtatagttttcttAccgtcacataatggtgtttt	7	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51727926	T	T	51727926	1	4	61	0	1	0	0	0	0	0	0	0	15905	406	14	5		5	TEX264	3	51727926	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	271946	51727926	146294504	1638	69883											
GRM2	2912	broad.mit.edu	37	chr3	51749542	51749542	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccctggccaccctctttGtgctgggtgtctttgtgcgg	14	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51749542	A	A	51749542	3	1	61	1	0	0	0	0	1	0	0	0	6863	1377	48	4	1763	4	GRM2	3	51749542	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21616	51749542	146272888	1639	69884											
IQCF3	401067	broad.mit.edu	37	chr3	51864588	51864588	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacggatccgtcagcggcGgcaggccctgttgagggtct	17	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51864588	A	A	51864588	3	1	61	1	0	0	0	0	1	0	0	0	7879	1116	39	4	246	4	IQCF3	3	51864588	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	115046	51864588	146157842	1640	69885											
DNAH1	25981	broad.mit.edu	37	chr3	52384214	52384214	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcaggggctgggaggtcGgactcaggaggctgagggta	21	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52384214	C	C	52384214	1	2	61	0	1	0	0	0	0	0	0	0	4637	1131	39	4		4	DNAH1	3	52384214	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	519626	52384214	145638216	1641	69886											
DNAH1	25981	broad.mit.edu	37	chr3	52392660	52392660	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctccatctacccctcCagcaacgtggaggactggct	9	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52392660	T	T	52392660	2	4	61	1	0	0	0	0	0	0	0	1	4637	581	21	4		4	DNAH1	3	52392660	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8446	52392660	145629770	1642	69887											
DNAH1	25981	broad.mit.edu	37	chr3	52394113	52394113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgaggacatggggggcGcccccagggccagagcagct	19	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52394113	T	T	52394113	1	4	61	0	1	0	0	0	0	0	0	0	4637	1102	38	3		3	DNAH1	3	52394113	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1453	52394113	145628317	1643	69888											
SEMA3G	56920	broad.mit.edu	37	chr3	52475604	52475604	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaccgtgcaagagactcTggtcagagtcggaacgcaga	12	12	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52475604	C	C	52475604	3	2	61	1	0	0	0	0	1	0	0	0	14143	1580	55	5	1739	5	SEMA3G	3	52475604	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	81491	52475604	145546826	1644	69889											
STAB1	23166	broad.mit.edu	37	chr3	52558144	52558144	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatgctgatgacgacttctCaccgtggcaagaagggacca	12	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52558144	A	A	52558144	4	1	61	1	0	0	0	0	0	1	0	0	15355	838	29	3	7841	3	STAB1	3	52558144	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	82540	52558144	145464286	1645	69890											
PBRM1	55193	broad.mit.edu	37	chr3	52662900	52662900	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaaactcagcaaaaacaaTaaatcacacctgcataactt	2	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52662900	A	A	52662900	1	1	61	0	1	0	0	0	0	0	0	0	11585	1421	49	5		5	PBRM1	3	52662900	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	104756	52662900	145359530	1646	69891											
ITIH1	3697	broad.mit.edu	37	chr3	52811905	52811905	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaccaccaaggaggtgaAgctaaggggcagaggacaca	14	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52811905	C	C	52811905	1	2	61	0	1	0	0	0	0	0	0	0	7973	87	3	5		5	ITIH1	3	52811905	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	149005	52811905	145210525	1647	69892											
ITIH1	3697	broad.mit.edu	37	chr3	52812174	52812174	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctagaaatggggacttgttCccatctcacctcatatccca	6	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52812174	A	A	52812174	1	1	61	0	1	0	0	0	0	0	0	0	7973	870	30	3		3	ITIH1	3	52812174	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	269	52812174	145210256	1648	69893											
ITIH1	3697	broad.mit.edu	37	chr3	52812236	52812236	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaggggtcttcctgcggtcTgttcttcctgcatctgggca	13	12	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52812236	A	A	52812236	1	1	61	0	1	0	0	0	0	0	0	0	7973	1595	55	5		5	ITIH1	3	52812236	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	62	52812236	145210194	1649	69894											
SFMBT1	51460	broad.mit.edu	37	chr3	52947435	52947435	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtggctccctgtagaaaTgaccataggagaatgctgtg	12	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52947435	C	C	52947435	1	2	61	0	1	0	0	0	0	0	0	0	14270	1479	51	5		5	SFMBT1	3	52947435	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	135199	52947435	145074995	1650	69895											
RFT1	91869	broad.mit.edu	37	chr3	53126615	53126615	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggaatgaggaggacagggCcagcatcacaaaattgtacc	12	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53126615	G	G	53126615	3	3	61	1	0	0	0	0	1	0	0	0	13365	739	26	4	405	4	RFT1	3	53126615	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	179180	53126615	144895815	1651	69896											
CACNA1D	776	broad.mit.edu	37	chr3	53707833	53707833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttaacctggttcttggtGtccttagtgggtaagcagtc	11	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53707833	T	T	53707833	1	4	61	0	1	0	0	0	0	0	0	0	2567	1377	48	3		3	CACNA1D	3	53707833	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	581218	53707833	144314597	1652	69897											
CACNA1D	776	broad.mit.edu	37	chr3	53778922	53778922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaattactggctcttctGggcagagctgagctgaggcc	13	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53778922	T	T	53778922	1	4	61	0	1	0	0	0	0	0	0	0	2567	1363	47	2		2	CACNA1D	3	53778922	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71089	53778922	144243508	1653	69898											
CACNA1D	776	broad.mit.edu	37	chr3	53809960	53809960	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcatgctggcctgtctccCagggaagctctgtgaccctg	12	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53809960	G	G	53809960	3	3	61	1	0	0	0	0	1	0	0	0	2567	594	21	4	4560	4	CACNA1D	3	53809960	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31038	53809960	144212470	1654	69899											
CACNA2D3	55799	broad.mit.edu	37	chr3	54254728	54254728	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaaaccctccctggctActgaaccacttgtctcctcc	6	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54254728	C	C	54254728	1	2	61	0	1	0	0	0	0	0	0	0	2576	406	14	5		5	CACNA2D3	3	54254728	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	444768	54254728	143767702	1655	69900											
CACNA2D3	55799	broad.mit.edu	37	chr3	54616024	54616024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattgaggcccttggagcCcccatgtgtagaatatttat	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54616024	A	A	54616024	1	1	61	0	1	0	0	0	0	0	0	0	2576	638	22	2		2	CACNA2D3	3	54616024	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	361296	54616024	143406406	1656	69901											
CACNA2D3	55799	broad.mit.edu	37	chr3	54644686	54644686	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgagatggagtttcactctCgtcacccaggctggagtgca	12	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54644686	A	A	54644686	1	1	61	0	1	0	0	0	0	0	0	0	2576	899	31	3		3	CACNA2D3	3	54644686	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28662	54644686	143377744	1657	69902											
CACNA2D3	55799	broad.mit.edu	37	chr3	54715760	54715760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctttgtcacccaggctgGtgtgatgcaatctcggctca	11	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54715760	T	T	54715760	1	4	61	0	1	0	0	0	0	0	0	0	2576	1276	44	3		3	CACNA2D3	3	54715760	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71074	54715760	143306670	1658	69903											
CACNA2D3	55799	broad.mit.edu	37	chr3	55038927	55038927	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctttctccctgtctgagTgttatcttcctctttggagt	8	10	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55038927	C	C	55038927	1	2	61	0	1	0	0	0	0	0	0	0	2576	1711	59	5		5	CACNA2D3	3	55038927	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	323167	55038927	142983503	1659	69904											
CACNA2D3	55799	broad.mit.edu	37	chr3	55043458	55043458	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagttggtggcactccgatAtgacagctaaaggtgagcag	14	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55043458	G	G	55043458	3	3	61	1	0	0	0	0	1	0	0	0	2576	449	16	5	2997	5	CACNA2D3	3	55043458	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4531	55043458	142978972	1660	69905											
ERC2	26059	broad.mit.edu	37	chr3	55746494	55746494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcaggaataaatgttagCagttgatatggggctttact	11	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55746494	A	A	55746494	1	1	61	0	1	0	0	0	0	0	0	0	5253	725	25	3		3	ERC2	3	55746494	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	703036	55746494	142275936	1661	69906											
ERC2	26059	broad.mit.edu	37	chr3	56469072	56469072	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgttactgaagagaagaaAtgctatattaagttggggtt	13	2	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56469072	T	T	56469072	1	4	61	0	1	0	0	0	0	0	0	0	5253	116	4	5		5	ERC2	3	56469072	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	722578	56469072	141553358	1662	69907											
CCDC66	285331	broad.mit.edu	37	chr3	56627994	56627994	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctccgttctatgactgctCtcttggacccagctcagatt	7	13	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56627994	T	T	56627994	3	4	61	1	0	0	0	0	1	0	0	0	2866	913	32	4	1380	4	CCDC66	3	56627994	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	158922	56627994	141394436	1663	69908											
ARHGEF3	50650	broad.mit.edu	37	chr3	56788998	56788998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagccagctccatgggcCccgagcctacctcctgacgt	9	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56788998	A	A	56788998	1	1	61	0	1	0	0	0	0	0	0	0	906	638	22	2		2	ARHGEF3	3	56788998	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	161004	56788998	141233432	1664	69909											
DNAH12	201625	broad.mit.edu	37	chr3	57356409	57356409	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccttgaaaaactcaggatCagaaactggatcagtgagat	9	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57356409	G	G	57356409	3	3	61	1	0	0	0	0	1	0	0	0	4640	826	29	4	1436	4	DNAH12	3	57356409	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	567411	57356409	140666021	1665	69910											
FLNB	2317	broad.mit.edu	37	chr3	58154424	58154424	+	Intron	DEL	G	-	-													cggagttactctcccttcctGgggagctggttgtgtcagat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58154424	-	-	58154424	6	5	61	0	1	1	0	1	0	0	0	0	5992	1363	47	0		0	FLNB	3	58154424	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	798015	58154424	139868006	1666	69911											
PXK	54899	broad.mit.edu	37	chr3	58395910	58395910	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggttatagatggtagtgGggcccaggacacagagatca	14	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58395910	A	A	58395910	1	1	61	0	1	0	0	0	0	0	0	0	12957	1247	43	4		4	PXK	3	58395910	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	241486	58395910	139626520	1667	69912											
FHIT	2272	broad.mit.edu	37	chr3	59904389	59904389	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagaagaggagcagcccaTgaaataggcaaggatcttaa	13	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59904389	A	A	59904389	1	1	61	0	1	0	0	0	0	0	0	0	5934	1479	51	5		5	FHIT	3	59904389	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1508479	59904389	138118041	1668	69913											
FHIT	2272	broad.mit.edu	37	chr3	59936065	59936065	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcttccctgccctcatcaCctgtccttcctctccctgtt	3	20	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59936065	G	G	59936065	1	3	61	0	1	0	0	0	0	0	0	0	5934	522	18	4		4	FHIT	3	59936065	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31676	59936065	138086365	1669	69914											
FHIT	2272	broad.mit.edu	37	chr3	60067636	60067637	+	Intron	INS	-	T	T													taaccacaaacgttaagtgaINStttttttttttgttctacaa					rs111658268		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60067637	T	T	60067636	6	5	61	0	1	1	1	0	0	0	0	0	5934	348	12	0		0	FHIT	3	60067636	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	131571	60067636	137954794	1670	69915											
PTPRG	5793	broad.mit.edu	37	chr3	62022974	62022975	+	Intron	INS	-	T	T													gatcaccaggttggtggaacINSttgtctcttgatgtcatact							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62022975	T	T	62022974	6	5	61	0	1	1	1	0	0	0	0	0	12910	580	20	0		0	PTPRG	3	62022974	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1955338	62022974	135999456	1671	69916											
FEZF2	55079	broad.mit.edu	37	chr3	62356085	62356085	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggaggaagaggcgggcgTcccaggggcagcccaggtgc	21	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62356085	C	C	62356085	1	2	61	0	1	0	0	0	0	0	0	0	5883	1682	58	5		5	FEZF2	3	62356085	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	333111	62356085	135666345	1672	69917											
CADPS	8618	broad.mit.edu	37	chr3	62450149	62450149	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagccagcaggaacctgcTgtcagaaatggcagggaagc	14	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62450149	A	A	62450149	1	1	61	0	1	0	0	0	0	0	0	0	2596	1595	55	5		5	CADPS	3	62450149	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	94064	62450149	135572281	1673	69918											
CADPS	8618	broad.mit.edu	37	chr3	62485033	62485033	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggataagaaattgagaataGttatcagttttttaaaaaaa	7	1	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62485033	C	C	62485033	1	2	61	0	1	0	0	0	0	0	0	0	2596	1044	36	4		4	CADPS	3	62485033	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34884	62485033	135537397	1674	69919											
CADPS	8618	broad.mit.edu	37	chr3	62830056	62830056	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaaggaaaatctgaggtTgacacacctactttttgaca	7	9	1	3	rs114031366	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62830056	C	C	62830056	1	2	61	0	1	0	0	0	0	0	0	0	2596	1827	63	5		5	CADPS	3	62830056	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	345023	62830056	135192374	1675	69920											
SYNPR	132204	broad.mit.edu	37	chr3	63466559	63466559	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctattctggaggcctgCggctgagtgtggactgcgtc	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63466559	A	A	63466559	2	1	61	1	0	0	0	0	0	0	0	1	15578	759	27	3		3	SYNPR	3	63466559	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	636503	63466559	134555871	1676	69921											
PRICKLE2	166336	broad.mit.edu	37	chr3	64184728	64184728	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagtcactagcccctggatCccaaaccataaacacattcc	4	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64184728	A	A	64184728	1	1	61	0	1	0	0	0	0	0	0	0	12593	870	30	3		3	PRICKLE2	3	64184728	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	718169	64184728	133837702	1677	69922											
ADAMTS9	56999	broad.mit.edu	37	chr3	64644259	64644259	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctgccaccaccaagacTtctacaaaccgtggatagga	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64644259	G	G	64644259	3	3	61	1	0	0	0	0	1	0	0	0	273	1606	56	5	5063	5	ADAMTS9	3	64644259	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	459531	64644259	133378171	1678	69923											
ADAMTS9	56999	broad.mit.edu	37	chr3	64672312	64672312	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacatagcctttgtagaaacAgtgcttgagttccgcttcct	9	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64672312	T	T	64672312	3	4	61	1	0	0	0	0	1	0	0	0	273	188	7	5	5511	5	ADAMTS9	3	64672312	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	28053	64672312	133350118	1679	69924											
MAGI1	9223	broad.mit.edu	37	chr3	65342156	65342156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcagattcgcctcttccCtttctcggtggctggctctg	10	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65342156	A	A	65342156	3	1	61	1	0	0	0	0	1	0	0	0	9282	681	24	2	106	2	MAGI1	3	65342156	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	669844	65342156	132680274	1680	69925											
MAGI1	9223	broad.mit.edu	37	chr3	65531689	65531690	+	Intron	INS	-	CT	CT													cacacacacacacacacacaINSctctcaaactacaaaaataa					rs1917529		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	65531690	CT	CT	65531689	6	5	61	0	1	1	1	0	0	0	0	0	9282	174	6	0		0	MAGI1	3	65531689	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	189533	65531689	132490741	1681	69926											
MAGI1	9223	broad.mit.edu	37	chr3	65673700	65673700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggctttgagcccctcaCaccctggatcctaggcctac	8	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65673700	A	A	65673700	1	1	61	0	1	0	0	0	0	0	0	0	9282	493	17	3		3	MAGI1	3	65673700	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	142011	65673700	132348730	1682	69927											
KBTBD8	84541	broad.mit.edu	37	chr3	67054199	67054199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagctgtgtagaaaagggaCcatccaacaccaatggctgt	10	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67054199	T	T	67054199	3	4	61	1	0	0	0	0	1	0	0	0	8069	507	18	4	818	4	KBTBD8	3	67054199	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1380499	67054199	130968231	1683	69928											
FAM19A1	407738	broad.mit.edu	37	chr3	68055822	68055822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttgtggataagtgcttGtgcaatgctactctgccatg	11	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68055822	T	T	68055822	3	4	61	1	0	0	0	0	1	0	0	0	5578	1377	48	3	55	3	FAM19A1	3	68055822	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1001623	68055822	129966608	1684	69929											
FAM19A1	407738	broad.mit.edu	37	chr3	68486335	68486335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtaagccttctaacagGcaatgcaaagagggaaacaa	11	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68486335	T	T	68486335	1	4	61	0	1	0	0	0	0	0	0	0	5578	1218	42	3		3	FAM19A1	3	68486335	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	430513	68486335	129536095	1685	69930											
UBA3	9039	broad.mit.edu	37	chr3	69105182	69105182	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttctattttttccctctAgggtggctgtgatggctgga	13	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69105182	G	G	69105182	3	3	61	1	0	0	0	0	1	0	0	0	16955	420	15	5	186	5	UBA3	3	69105182	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	618847	69105182	128917248	1686	69931											
UBA3	9039	broad.mit.edu	37	chr3	69113213	69113213	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattaatttcaagtaaaaaActtacgtcgatagaaagtgt	7	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69113213	T	T	69113213	1	4	61	0	1	0	0	0	0	0	0	0	16955	58	2	5		5	UBA3	3	69113213	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8031	69113213	128909217	1687	69932											
FRMD4B	23150	broad.mit.edu	37	chr3	69225773	69225773	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagccctatggttaactgGgtcctccagttcccagaagc	10	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69225773	A	A	69225773	2	1	61	1	0	0	0	0	0	0	0	1	6112	1219	43	4		4	FRMD4B	3	69225773	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	112560	69225773	128796657	1688	69933											
MITF	4286	broad.mit.edu	37	chr3	70014048	70014048	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcccttattccatccacGggtctctgctctccagattt	5	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70014048	T	T	70014048	2	4	61	1	0	0	0	0	0	0	0	1	9689	1103	39	1		1	MITF	3	70014048	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	788275	70014048	128008382	1689	69934											
FOXP1	27086	broad.mit.edu	37	chr3	71090457	71090457	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttaaaggcagttttggaccCatctcagtggctggttccta	11	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71090457	G	G	71090457	1	3	61	0	1	0	0	0	0	0	0	0	6086	609	21	4		4	FOXP1	3	71090457	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1076409	71090457	126931973	1690	69935											
GPR27	2850	broad.mit.edu	37	chr3	71804187	71804187	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtgtggctgaccttcgcGcaggccggcatcaaccccgt	12	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71804187	T	T	71804187	2	4	61	1	0	0	0	0	0	0	0	1	6750	1074	38	3		3	GPR27	3	71804187	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	713730	71804187	126218243	1691	69936											
RYBP	23429	broad.mit.edu	37	chr3	72427727	72427727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtgataatgacggtgaCgttgcccacagttactgcca	11	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72427727	A	A	72427727	3	1	61	1	0	0	0	0	1	0	0	0	13877	536	19	3	194	3	RYBP	3	72427727	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	623540	72427727	125594703	1692	69937											
PDZRN3	23024	broad.mit.edu	37	chr3	73437067	73437067	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttttgcaggcctggggatCttttgattttagaaatatag	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73437067	A	A	73437067	1	1	61	0	1	0	0	0	0	0	0	0	11803	928	32	3		3	PDZRN3	3	73437067	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1009340	73437067	124585363	1693	69938											
PDZRN3	23024	broad.mit.edu	37	chr3	73440205	73440205	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgtcgtcttcatcgtcCgtccggtagcacacagtgag	10	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73440205	T	T	73440205	2	4	61	1	0	0	0	0	0	0	0	1	11803	639	23	4		4	PDZRN3	3	73440205	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3138	73440205	124582225	1694	69939											
CNTN3	5067	broad.mit.edu	37	chr3	74350660	74350660	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatgggtttaactcaactaCagtggctgtgtgcgtcttcc	10	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74350660	G	G	74350660	3	3	61	1	0	0	0	0	1	0	0	0	3674	478	17	4	1134	4	CNTN3	3	74350660	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	910455	74350660	123671770	1695	69940											
CNTN3	5067	broad.mit.edu	37	chr3	74420602	74420602	+	Intron	DEL	C	-	-													ccatcattaaggacagttttCcattgtgtccttaatgtatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74420602	-	-	74420602	6	5	61	0	1	1	0	1	0	0	0	0	3674	870	30	0		0	CNTN3	3	74420602	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	69942	74420602	123601828	1696	69941											
ROBO2	6092	broad.mit.edu	37	chr3	77366426	77366426	+	Intron	DEL	T	-	-													accctgtcttgattttagcaTtttttttttcccagtgttag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77366426	-	-	77366426	6	5	61	0	1	1	0	1	0	0	0	0	13625	1508	52	0		0	ROBO2	3	77366426	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	2945824	77366426	120656004	1697	69942											
ROBO2	6092	broad.mit.edu	37	chr3	77526491	77526491	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaacaaggtaaacaagacttGaagttaccttgtacaacaaa	7	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77526491	A	A	77526491	1	1	61	0	1	0	0	0	0	0	0	0	13625	1305	45	4		4	ROBO2	3	77526491	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	160065	77526491	120495939	1698	69943											
ROBO2	6092	broad.mit.edu	37	chr3	77599951	77599951	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatgaatattgatgagaTtgtgcttgcttccacagaac	9	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77599951	G	G	77599951	1	3	61	0	1	0	0	0	0	0	0	0	13625	1508	52	5		5	ROBO2	3	77599951	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	73460	77599951	120422479	1699	69944											
ROBO2	6092	broad.mit.edu	37	chr3	77651625	77651625	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttattctctacctgatcAgaacaaaggtaacaatggtg	9	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77651625	T	T	77651625	3	4	61	1	0	0	0	0	1	0	0	0	13625	188	7	5	3199	5	ROBO2	3	77651625	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	51674	77651625	120370805	1700	69945											
ROBO1	6091	broad.mit.edu	37	chr3	78680311	78680311	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttggatgctcctcttacCtttcatctacagaaatgttg	7	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78680311	G	G	78680311	3	3	61	1	0	0	0	0	1	0	0	0	13624	695	24	4	1357	4	ROBO1	3	78680311	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1028686	78680311	119342119	1701	69946											
ROBO1	6091	broad.mit.edu	37	chr3	79043495	79043495	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaagcattttgggggaagCtggagctattaaaaacagtg	14	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79043495	G	G	79043495	1	3	61	0	1	0	0	0	0	0	0	0	13624	812	28	4		4	ROBO1	3	79043495	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	363184	79043495	118978935	1702	69947											
ROBO1	6091	broad.mit.edu	37	chr3	79174657	79174657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtggggattggcgtccCgtggtcgttccccctctcta	14	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79174657	A	A	79174657	3	1	61	1	0	0	0	0	1	0	0	0	13624	652	23	1	5022	1	ROBO1	3	79174657	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	131162	79174657	118847773	1703	69948											
ROBO1	6091	broad.mit.edu	37	chr3	79652490	79652491	+	Intron	INS	-	A	A													aaacaagccaagccaatcacINSatccttctggaagaaccaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79652491	A	A	79652490	6	5	61	0	1	1	1	0	0	0	0	0	13624	493	17	0		0	ROBO1	3	79652490	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	477833	79652490	118369940	1704	69949											
GBE1	2632	broad.mit.edu	37	chr3	81539467	81539467	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggctagacaactgtattCtgaaaagcatacatgttata	7	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81539467	G	G	81539467	1	3	61	0	1	0	0	0	0	0	0	0	6332	928	32	4		4	GBE1	3	81539467	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1886977	81539467	116482963	1705	69950											
GBE1	2632	broad.mit.edu	37	chr3	81720077	81720077	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccataatccagttttttgTatgggtacgaaaatggattc	8	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81720077	C	C	81720077	3	2	61	1	0	0	0	0	1	0	0	0	6332	1638	57	5	1823	5	GBE1	3	81720077	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	180610	81720077	116302353	1706	69951											
CADM2	253559	broad.mit.edu	37	chr3	85030536	85030536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtttgtttggtctagggtGccagagaaaggaggggcaca	16	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85030536	T	T	85030536	1	4	61	0	1	0	0	0	0	0	0	0	2593	1334	46	3		3	CADM2	3	85030536	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3310459	85030536	112991894	1707	69952											
CADM2	253559	broad.mit.edu	37	chr3	85703531	85703531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggaacacaaggcttaGgaaaaagtatgcagggttca	13	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85703531	T	T	85703531	1	4	61	0	1	0	0	0	0	0	0	0	2593	1015	35	2		2	CADM2	3	85703531	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	672995	85703531	112318899	1708	69953											
CADM2	253559	broad.mit.edu	37	chr3	85740247	85740247	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccccagcttttggtaaaCgctattctactcttattctc	4	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85740247	T	T	85740247	1	4	61	0	1	0	0	0	0	0	0	0	2593	551	19	4		4	CADM2	3	85740247	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36716	85740247	112282183	1709	69954											
CADM2	253559	broad.mit.edu	37	chr3	86061750	86061750	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccaactgcacgcgaagcGcacgcagtccgacctggcct	10	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86061750	A	A	86061750	1	1	61	0	1	0	0	0	0	0	0	0	2593	1102	38	4		4	CADM2	3	86061750	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	321503	86061750	111960680	1710	69955											
CADM2	253559	broad.mit.edu	37	chr3	86063813	86063813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcttatctctggtaccCtcagtcatgggacaactcaa	7	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86063813	T	T	86063813	1	4	61	0	1	0	0	0	0	0	0	0	2593	696	24	4		4	CADM2	3	86063813	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2063	86063813	111958617	1711	69956											
EPHA3	2042	broad.mit.edu	37	chr3	89353714	89353714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaacagtcttttccagGtgtctgtatgactaatatcc	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89353714	T	T	89353714	1	4	61	0	1	0	0	0	0	0	0	0	5210	1276	44	3		3	EPHA3	3	89353714	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3289901	89353714	108668716	1712	69957											
EPHA3	2042	broad.mit.edu	37	chr3	89391202	89391202	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagctgagctccccaccaaGacagtttgctgcggtcagca	11	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89391202	A	A	89391202	3	1	61	1	0	0	0	0	1	0	0	0	5210	942	33	4	1286	4	EPHA3	3	89391202	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37488	89391202	108631228	1713	69958											
EPHA3	2042	broad.mit.edu	37	chr3	89468559	89468559	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtaagtaaagtagtcataAgacctgtgtttccgtatgtt	9	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89468559	G	G	89468559	1	3	61	0	1	0	0	0	0	0	0	0	5210	87	3	5		5	EPHA3	3	89468559	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	77357	89468559	108553871	1714	69959											
NSUN3	63899	broad.mit.edu	37	chr3	93782099	93782099	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acctttgttcgtcccctcgcGagatcagcgtttctttggct	9	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93782099	T	T	93782099	1	4	61	0	1	0	0	0	0	0	0	0	10774	1073	37	3		3	NSUN3	3	93782099	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4313540	93782099	104240331	1715	69960											
EPHA6	285220	broad.mit.edu	37	chr3	96706580	96706580	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctggcttttcaagacattgGggcgtgcattgccctggttt	12	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96706580	C	C	96706580	3	2	61	1	0	0	0	0	1	0	0	0	5213	1232	43	4	867	4	EPHA6	3	96706580	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2924481	96706580	101315850	1716	69961											
EPHA6	285220	broad.mit.edu	37	chr3	96790661	96790661	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtgagattttggtgcaccGatcacccgagctctataccc	9	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96790661	T	T	96790661	1	4	61	0	1	0	0	0	0	0	0	0	5213	1073	37	3		3	EPHA6	3	96790661	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	84081	96790661	101231769	1717	69962											
MINA	84864	broad.mit.edu	37	chr3	97677986	97677986	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacagtggggtggtagaggCgccagtgtttctctccctcc	14	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97677986	G	G	97677986	3	3	61	1	0	0	0	0	1	0	0	0	9679	768	27	4	835	4	MINA	3	97677986	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	887325	97677986	100344444	1718	69963											
OR5AC2	81050	broad.mit.edu	37	chr3	97806572	97806572	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctactgtgaaattttacaaCtgttcaaaatttcatgcaat	4	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97806572	T	T	97806572	2	4	61	1	0	0	0	0	0	0	0	1	11235	564	20	4		4	OR5AC2	3	97806572	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	128586	97806572	100215858	1719	69964											
OR5H2	79310	broad.mit.edu	37	chr3	98001903	98001903	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcttatctggaatgacCcacaacttcacatccccatg	5	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98001903	G	G	98001903	3	3	61	1	0	0	0	0	1	0	0	0	11256	623	22	4	174	4	OR5H2	3	98001903	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	195331	98001903	100020527	1720	69965											
CLDND1	56650	broad.mit.edu	37	chr3	98244083	98244083	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttcattgggctgtgaaCagaaagtccttgatttcctc	8	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98244083	A	A	98244083	1	1	61	0	1	0	0	0	0	0	0	0	3525	493	17	3		3	CLDND1	3	98244083	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	242180	98244083	99778347	1721	69966											
TBC1D23	55773	broad.mit.edu	37	chr3	100025400	100025400	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgatgtaagtatatgtAgagaatatgttaccggattt	10	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100025400	G	G	100025400	1	3	61	0	1	0	0	0	0	0	0	0	15732	435	15	5		5	TBC1D23	3	100025400	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1781317	100025400	97997030	1722	69967											
GPR128	84873	broad.mit.edu	37	chr3	100365350	100365350	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgactgtcttatactacttGattttttttaacccaattaa	3	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100365350	C	C	100365350	1	2	61	0	1	0	0	0	0	0	0	0	6706	1305	45	4		4	GPR128	3	100365350	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	339950	100365350	97657080	1723	69968											
GPR128	84873	broad.mit.edu	37	chr3	100388072	100388072	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggcgcggtggctcacgccTgtaatgccagcactttggga	14	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100388072	G	G	100388072	1	3	61	0	1	0	0	0	0	0	0	0	6706	1595	55	5		5	GPR128	3	100388072	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	22722	100388072	97634358	1724	69969											
ABI3BP	25890	broad.mit.edu	37	chr3	100527187	100527187	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgattgaagacctaaatacTcaacaatgaaggcttctaaa	7	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100527187	C	C	100527187	1	2	61	0	1	0	0	0	0	0	0	0	91	1566	54	5		5	ABI3BP	3	100527187	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	139115	100527187	97495243	1725	69970											
ABI3BP	25890	broad.mit.edu	37	chr3	100530061	100530061	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcacccagggttgggctaCcgaggttattacctagtgtg	14	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100530061	T	T	100530061	1	4	61	0	1	0	0	0	0	0	0	0	91	522	18	4		4	ABI3BP	3	100530061	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2874	100530061	97492369	1726	69971											
ABI3BP	25890	broad.mit.edu	37	chr3	100554509	100554509	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtctgtggtgggaactaaCcaaaagcaatacaataaaca	8	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100554509	G	G	100554509	1	3	61	0	1	0	0	0	0	0	0	0	91	522	18	4		4	ABI3BP	3	100554509	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24448	100554509	97467921	1727	69972											
ABI3BP	25890	broad.mit.edu	37	chr3	100569622	100569622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaaagcagtagaaggccCcaggaataaaatacaaattc	8	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100569622	A	A	100569622	1	1	61	0	1	0	0	0	0	0	0	0	91	638	22	2		2	ABI3BP	3	100569622	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15113	100569622	97452808	1728	69973											
ABI3BP	25890	broad.mit.edu	37	chr3	100630786	100630786	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaatattttcttcagtgcTtgctcatttacttcacttga	6	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100630786	A	A	100630786	1	1	61	0	1	0	0	0	0	0	0	0	91	1624	56	5		5	ABI3BP	3	100630786	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	61164	100630786	97391644	1729	69974											
ZPLD1	131368	broad.mit.edu	37	chr3	102181032	102181032	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtttatgttgatttacTttcttttttctctctctaat	5	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102181032	G	G	102181032	1	3	61	0	1	0	0	0	0	0	0	0	18350	1624	56	5		5	ZPLD1	3	102181032	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1550246	102181032	95841398	1730	69975											
ZPLD1	131368	broad.mit.edu	37	chr3	102196310	102196310	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaagtatgcctcccttcCagctgaacgccatcaccagc	6	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102196310	T	T	102196310	4	4	61	1	0	0	0	0	0	1	0	0	18350	595	21	4	1186	4	ZPLD1	3	102196310	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15278	102196310	95826120	1731	69976											
ALCAM	214	broad.mit.edu	37	chr3	105188012	105188012	+	Intron	DEL	G	-	-													attcccccaacaagtattgcGgggttttttgttgttgatac					rs78637040		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105188012	-	-	105188012	6	5	61	0	1	1	0	1	0	0	0	0	487	1131	39	0		0	ALCAM	3	105188012	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	2991702	105188012	92834418	1732	69977											
CBLB	868	broad.mit.edu	37	chr3	105422977	105422977	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttctctgggcaaggggagagGatcctggtgatgtgactggt	17	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105422977	C	C	105422977	3	2	61	1	0	0	0	0	1	0	0	0	2727	1174	41	4	1536	4	CBLB	3	105422977	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	234965	105422977	92599453	1733	69978											
CBLB	868	broad.mit.edu	37	chr3	105489450	105489450	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccttgaacagaatggggaGggaggagttgcggcaagtgg	18	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105489450	A	A	105489450	1	1	61	0	1	0	0	0	0	0	0	0	2727	1015	35	4		4	CBLB	3	105489450	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66473	105489450	92532980	1734	69979											
CCDC54	84692	broad.mit.edu	37	chr3	107096340	107096340	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgttatcaggaaaggcatCcaacaaatagtaagagaagg	11	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107096340	A	A	107096340	1	1	61	0	1	0	0	0	0	0	0	0	2852	870	30	3		3	CCDC54	3	107096340	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1606890	107096340	90926090	1735	69980											
HHLA2	11148	broad.mit.edu	37	chr3	108076997	108076997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttacttaccatccacaCagtgcatgtaggtaagttgc	7	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108076997	A	A	108076997	3	1	61	1	0	0	0	0	1	0	0	0	7162	478	17	3	1006	3	HHLA2	3	108076997	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	980657	108076997	89945433	1736	69981											
MYH15	22989	broad.mit.edu	37	chr3	108112838	108112838	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggccactgcgccagtgaaCtctgggagacaggattgagt	14	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108112838	T	T	108112838	1	4	61	0	1	0	0	0	0	0	0	0	10128	580	20	4		4	MYH15	3	108112838	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	35841	108112838	89909592	1737	69982											
MYH15	22989	broad.mit.edu	37	chr3	108135677	108135677	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttggtctccttttccagCtgccctctcaggtcttcaat	6	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108135677	T	T	108135677	2	4	61	1	0	0	0	0	0	0	0	1	10128	796	28	4		4	MYH15	3	108135677	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22839	108135677	89886753	1738	69983											
DZIP3	9666	broad.mit.edu	37	chr3	108356315	108356315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaattgaactactttagGgctattttttttccccatta	5	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108356315	T	T	108356315	1	4	61	0	1	0	0	0	0	0	0	0	4905	1247	43	2		2	DZIP3	3	108356315	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	220638	108356315	89666115	1739	69984											
DZIP3	9666	broad.mit.edu	37	chr3	108392776	108392776	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcattgatttaaaagctTttgtaatgtatcttgaatgg	10	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108392776	A	A	108392776	1	1	61	0	1	0	0	0	0	0	0	0	4905	1856	64	5		5	DZIP3	3	108392776	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36461	108392776	89629654	1740	69985											
RETNLB	84666	broad.mit.edu	37	chr3	108475360	108475360	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggagttactcaccagcaGggcaggaggacggtctgcct	15	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108475360	T	T	108475360	3	4	61	1	0	0	0	0	1	0	0	0	13345	1000	35	2	140	2	RETNLB	3	108475360	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	82584	108475360	89547070	1741	69986											
GUCA1C	9626	broad.mit.edu	37	chr3	108672644	108672644	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagcttttcctcaggttgTtttcacttaagtttttgctg	7	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108672644	A	A	108672644	1	1	61	0	1	0	0	0	0	0	0	0	6955	1740	60	5		5	GUCA1C	3	108672644	5'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	197284	108672644	89349786	1742	69987											
MORC1	27136	broad.mit.edu	37	chr3	108763514	108763514	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaataagagaaatgtgtgGggcatggtggctcatgcctg	14	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108763514	T	T	108763514	1	4	61	0	1	0	0	0	0	0	0	0	9795	1247	43	2		2	MORC1	3	108763514	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	90870	108763514	89258916	1743	69988											
MORC1	27136	broad.mit.edu	37	chr3	108780724	108780724	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaacttaatcttctgagcTtatctgtgcttaaaagttta	5	7	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108780724	G	G	108780724	1	3	61	0	1	0	0	0	0	0	0	0	9795	1624	56	5		5	MORC1	3	108780724	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17210	108780724	89241706	1744	69989											
MORC1	27136	broad.mit.edu	37	chr3	108817260	108817260	+	Intron	DEL	C	-	-													acttttcctcaggtcaggctCccacacggcttactcctttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108817260	-	-	108817260	6	5	61	0	1	1	0	1	0	0	0	0	9795	870	30	0		0	MORC1	3	108817260	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	36536	108817260	89205170	1745	69990											
DPPA2	151871	broad.mit.edu	37	chr3	109019205	109019205	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttattttgaggtggcatatTctcatctcttacattgtatt	6	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109019205	A	A	109019205	1	1	61	0	1	0	0	0	0	0	0	0	4774	1798	62	5		5	DPPA2	3	109019205	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	201945	109019205	89003225	1746	69991											
DPPA4	55211	broad.mit.edu	37	chr3	109050771	109050771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcccgcagaatgtcccGgtgaatcagattaacaggtg	12	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109050771	T	T	109050771	2	4	61	1	0	0	0	0	0	0	0	1	4776	1115	39	1		1	DPPA4	3	109050771	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31566	109050771	88971659	1747	69992											
PVRL3	25945	broad.mit.edu	37	chr3	110853127	110853127	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagttgatcattttcagattGttcatactttttcttgagga	7	5	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110853127	C	C	110853127	1	2	61	0	1	0	0	0	0	0	0	0	12949	1392	48	4		4	PVRL3	3	110853127	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1802356	110853127	87169303	1748	69993											
ZBED2	79413	broad.mit.edu	37	chr3	111312893	111312893	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatgcctcagagaaccgGgtgcccttgttgtggggcat	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111312893	T	T	111312893	2	4	61	1	0	0	0	0	0	0	0	1	17645	1219	43	2		2	ZBED2	3	111312893	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	459766	111312893	86709537	1749	69994											
ZBED2	79413	broad.mit.edu	37	chr3	111312927	111312927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcattggagtgggcataGcactcacaaaagggccaacc	14	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111312927	T	T	111312927	3	4	61	1	0	0	0	0	1	0	0	0	17645	971	34	3	538	3	ZBED2	3	111312927	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34	111312927	86709503	1750	69995											
CCDC80	151887	broad.mit.edu	37	chr3	112328923	112328923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaacctcctcctccacCggaacctggaaaaaaaaagc	6	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112328923	A	A	112328923	3	1	61	1	0	0	0	0	1	0	0	0	2882	652	23	1	537	1	CCDC80	3	112328923	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1015996	112328923	85693507	1751	69996											
CD200R1L	344807	broad.mit.edu	37	chr3	112534583	112534583	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaacaaaattttattcactCtaacacaaaagaagtcaatg	4	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112534583	G	G	112534583	1	3	61	0	1	0	0	0	0	0	0	0	3012	928	32	4		4	CD200R1L	3	112534583	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	205660	112534583	85487847	1752	69997											
CD200R1L	344807	broad.mit.edu	37	chr3	112545933	112545933	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctcccaggggcatgtacTcttaaccgtcactgtgccat	9	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112545933	G	G	112545933	3	3	61	1	0	0	0	0	1	0	0	0	3012	1551	54	5	241	5	CD200R1L	3	112545933	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	11350	112545933	85476497	1753	69998											
CD200R1	131450	broad.mit.edu	37	chr3	112644089	112644089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtacaatccaaataatGtactatcttattattcaatg	5	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112644089	T	T	112644089	1	4	61	0	1	0	0	0	0	0	0	0	3011	1392	48	3		3	CD200R1	3	112644089	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98156	112644089	85378341	1754	69999											
C3orf17	25871	broad.mit.edu	37	chr3	112736109	112736109	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaacaaaaattactttttGaaatgctgaaatgcttttag	5	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112736109	C	C	112736109	1	2	61	0	1	0	0	0	0	0	0	0	2232	1305	45	4		4	C3orf17	3	112736109	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	92020	112736109	85286321	1755	70000											
BOC	91653	broad.mit.edu	37	chr3	112999848	112999848	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaccatatacacattgcCatgcaccattctctgactct	4	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112999848	A	A	112999848	1	1	61	0	1	0	0	0	0	0	0	0	1487	609	21	2		2	BOC	3	112999848	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	263739	112999848	85022582	1756	70001											
WDR52	55779	broad.mit.edu	37	chr3	113139050	113139050	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggaaagttgctaaggaaaAgaagtgaaaaacactaccat	10	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113139050	G	G	113139050	1	3	61	0	1	0	0	0	0	0	0	0	17431	87	3	5		5	WDR52	3	113139050	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	139202	113139050	84883380	1757	70002											
KIAA2018	205717	broad.mit.edu	37	chr3	113376755	113376755	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgaagttggggataaaccCgcacagctggccagaggatg	14	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113376755	T	T	113376755	2	4	61	1	0	0	0	0	0	0	0	1	8338	639	23	4		4	KIAA2018	3	113376755	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	237705	113376755	84645675	1758	70003											
DRD3	1814	broad.mit.edu	37	chr3	113850265	113850265	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgcaggtgtgacaagaGggaatcttgacatttctggg	15	6	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113850265	A	A	113850265	1	1	61	0	1	0	0	0	0	0	0	0	4798	1015	35	4		4	DRD3	3	113850265	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	473510	113850265	84172165	1759	70004											
ZBTB20	26137	broad.mit.edu	37	chr3	114069647	114069647	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagaggaagcacctgtttcTagctggtttgtctgcggacc	14	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114069647	C	C	114069647	2	2	61	1	0	0	0	0	0	0	0	1	17655	1509	53	5		5	ZBTB20	3	114069647	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	219382	114069647	83952783	1760	70005											
GAP43	2596	broad.mit.edu	37	chr3	115395142	115395143	+	Missense_Mutation	DNP	GG	TT	TT													ctgatgagcccggcaaagcaGgagaaactccttccgaggag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	115395143	TT	TT	115395142	3	4	61	1	0	0	0	0	1	0	0	0	6297	1001	35	2	461	2	GAP43	3	115395142	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	1325495	115395142	82627288	1761	70006											
LSAMP	4045	broad.mit.edu	37	chr3	115740892	115740892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagatacagaaagtgtttGtgctgaatagttaggaatgt	13	2	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115740892	T	T	115740892	1	4	61	0	1	0	0	0	0	0	0	0	9135	1392	48	3		3	LSAMP	3	115740892	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	345750	115740892	82281538	1762	70007											
LSAMP	4045	broad.mit.edu	37	chr3	115839789	115839789	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taattctatgctcatcaagtGaccttctgattatagaatgt	6	7	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115839789	T	T	115839789	1	4	61	0	1	0	0	0	0	0	0	0	9135	1305	45	3		3	LSAMP	3	115839789	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98897	115839789	82182641	1763	70008											
LSAMP	4045	broad.mit.edu	37	chr3	115920131	115920131	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagctcaggcagcatcagcCagtacagatttaaacacagc	8	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115920131	T	T	115920131	1	4	61	0	1	0	0	0	0	0	0	0	9135	609	21	4		4	LSAMP	3	115920131	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	80342	115920131	82102299	1764	70009											
LSAMP	4045	broad.mit.edu	37	chr3	116018183	116018183	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtactggaaacaggattgaTggagagtaaattcttagcaa	11	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116018183	A	A	116018183	1	1	61	0	1	0	0	0	0	0	0	0	9135	1479	51	5		5	LSAMP	3	116018183	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	98052	116018183	82004247	1765	70010											
LSAMP	4045	broad.mit.edu	37	chr3	116029760	116029761	+	Intron	DEL	TG	-	-													ggaggaagatgatgataagtTgttttttttttttttttaaa					rs145674562		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116029761	-	-	116029760	6	5	61	0	1	1	0	1	0	0	0	0	9135	1827	63	0		0	LSAMP	3	116029760	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	11577	116029760	81992670	1766	70011											
LSAMP	4045	broad.mit.edu	37	chr3	116163926	116163926	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgctctggaggggtgcGcgctgctcgcgaggagaggc	22	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116163926	T	T	116163926	1	4	61	0	1	0	0	0	0	0	0	0	9135	1102	38	3		3	LSAMP	3	116163926	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	134166	116163926	81858504	1767	70012											
IGSF11	152404	broad.mit.edu	37	chr3	118645243	118645243	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggagacagactcaccgccTgaacccaggggaggcatgta	13	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118645243	A	A	118645243	1	1	61	0	1	0	0	0	0	0	0	0	7668	1595	55	5		5	IGSF11	3	118645243	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2481317	118645243	79377187	1768	70013											
C3orf30	152405	broad.mit.edu	37	chr3	118870228	118870228	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaacaaagtacgtacaaCtctgaattcttatgaagtaa	6	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118870228	A	A	118870228	1	1	61	0	1	0	0	0	0	0	0	0	2242	580	20	3		3	C3orf30	3	118870228	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	224985	118870228	79152202	1769	70014											
CD80	941	broad.mit.edu	37	chr3	119255889	119255889	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagaattgcctaatgatgCatttctcaaaatgtatccac	6	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119255889	T	T	119255889	1	4	61	0	1	0	0	0	0	0	0	0	3068	725	25	4		4	CD80	3	119255889	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	385661	119255889	78766541	1770	70015											
ADPRH	141	broad.mit.edu	37	chr3	119306347	119306347	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggaaaattacctaaaActtagagggattttggatgg	11	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119306347	C	C	119306347	3	2	61	1	0	0	0	0	1	0	0	0	331	40	2	5	706	5	ADPRH	3	119306347	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	50458	119306347	78716083	1771	70016											
ADPRH	141	broad.mit.edu	37	chr3	119306361	119306361	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaaaacttagagggatttTggatggagaatcagccccta	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119306361	C	C	119306361	3	2	61	1	0	0	0	0	1	0	0	0	331	1821	63	5	720	5	ADPRH	3	119306361	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	14	119306361	78716069	1772	70017											
STXBP5L	9515	broad.mit.edu	37	chr3	120973802	120973802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttgaaaaacagaaggtagGagaaggaaaacaaacatgtg	12	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120973802	T	T	120973802	3	4	61	1	0	0	0	0	1	0	0	0	15475	1174	41	3	1560	3	STXBP5L	3	120973802	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1667441	120973802	77048628	1773	70018											
IQCB1	9657	broad.mit.edu	37	chr3	121491350	121491350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaaggttttggatgtcaCaaacctcgcataggttgttc	9	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121491350	A	A	121491350	1	1	61	0	1	0	0	0	0	0	0	0	7873	493	17	3		3	IQCB1	3	121491350	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	517548	121491350	76531080	1774	70019											
CD86	942	broad.mit.edu	37	chr3	121805446	121805446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcctaaatccacgctgggAagctggtgcctgtccaggtt	12	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121805446	G	G	121805446	1	3	61	0	1	0	0	0	0	0	0	0	3073	261	9	5		5	CD86	3	121805446	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	314096	121805446	76216984	1775	70020											
CD86	942	broad.mit.edu	37	chr3	121822855	121822855	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgggaagtgcatttgaaggGagtgtagagtctgggagtag	18	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121822855	T	T	121822855	1	4	61	0	1	0	0	0	0	0	0	0	3073	1189	41	3		3	CD86	3	121822855	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17409	121822855	76199575	1776	70021											
CD86	942	broad.mit.edu	37	chr3	121836852	121836852	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttccttcttttggtatcTaggaggaatacatttttgaa	7	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121836852	C	C	121836852	1	2	61	0	1	0	0	0	0	0	0	0	3073	1537	53	5		5	CD86	3	121836852	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13997	121836852	76185578	1777	70022											
DTX3L	151636	broad.mit.edu	37	chr3	122289383	122289383	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataataaggaaggaaggaagGttttgaaactgctttatagg	12	2	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122289383	A	A	122289383	3	1	61	1	0	0	0	0	1	0	0	0	4836	1261	44	4	2031	4	DTX3L	3	122289383	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	452531	122289383	75733047	1778	70023											
PARP14	54625	broad.mit.edu	37	chr3	122432201	122432201	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatccaagagggtcccatGtgagcaggatacccaagtca	11	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122432201	A	A	122432201	1	1	61	0	1	0	0	0	0	0	0	0	11552	1392	48	4		4	PARP14	3	122432201	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	142818	122432201	75590229	1779	70024											
DIRC2	84925	broad.mit.edu	37	chr3	122575375	122575375	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagtacaagaaaattcatAtgcgttatatagaattgctg	8	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122575375	G	G	122575375	1	3	61	0	1	0	0	0	0	0	0	0	4574	464	16	5		5	DIRC2	3	122575375	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	143174	122575375	75447055	1780	70025											
SEMA5B	54437	broad.mit.edu	37	chr3	122632803	122632803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagccgatgccacaggaCgtgctgcacagcgcccacga	13	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122632803	A	A	122632803	2	1	61	1	0	0	0	0	0	0	0	1	14151	523	19	3		3	SEMA5B	3	122632803	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	57428	122632803	75389627	1781	70026											
SEMA5B	54437	broad.mit.edu	37	chr3	122645495	122645495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagtatgcaaacagccCaatatcataggctgccacga	9	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122645495	A	A	122645495	3	1	61	1	0	0	0	0	1	0	0	0	14151	594	21	2	2635	2	SEMA5B	3	122645495	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12692	122645495	75376935	1782	70027											
PDIA5	10954	broad.mit.edu	37	chr3	122869526	122869526	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctgtcccctacctgcacActtcccacccctcagctgtc	4	23	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122869526	C	C	122869526	1	2	61	0	1	0	0	0	0	0	0	0	11765	174	6	5		5	PDIA5	3	122869526	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	224031	122869526	75152904	1783	70028											
ROPN1	54763	broad.mit.edu	37	chr3	123688964	123688964	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catccactttggcaatatacGtgtagagaaactggaaggtg	11	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123688964	C	C	123688964	3	2	61	1	0	0	0	0	1	0	0	0	13634	1145	40	4	149	4	ROPN1	3	123688964	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	819438	123688964	74333466	1784	70029											
KALRN	8997	broad.mit.edu	37	chr3	123790021	123790021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtaggtgtgctgggatGcttggtgatttgaacccagt	15	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123790021	T	T	123790021	1	4	61	0	1	0	0	0	0	0	0	0	8045	1334	46	3		3	KALRN	3	123790021	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	101057	123790021	74232409	1785	70030											
KALRN	8997	broad.mit.edu	37	chr3	124165685	124165685	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggagagaccacagaggagActcaggaactgctgaaagaa	13	8	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124165685	T	T	124165685	3	4	61	1	0	0	0	0	1	0	0	0	8045	275	10	5	3581	5	KALRN	3	124165685	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	375664	124165685	73856745	1786	70031											
KALRN	8997	broad.mit.edu	37	chr3	124376392	124376392	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcagatttatgactggcAtaaggagtaagtgttaatgc	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124376392	C	C	124376392	3	2	61	1	0	0	0	0	1	0	0	0	8045	217	8	5	6271	5	KALRN	3	124376392	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	210707	124376392	73646038	1787	70032											
MUC13	56667	broad.mit.edu	37	chr3	124632263	124632263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgggctagcaaaggtccCagccatggtccatatgtcta	10	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124632263	A	A	124632263	1	1	61	0	1	0	0	0	0	0	0	0	10065	609	21	2		2	MUC13	3	124632263	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	255871	124632263	73390167	1788	70033											
HEG1	57493	broad.mit.edu	37	chr3	124770954	124770954	+	Intron	DEL	C	-	-													ggcttttaaacactcatgcaCcacggagagtcccttgcccc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124770954	-	-	124770954	6	5	61	0	1	1	0	1	0	0	0	0	7111	522	18	0		0	HEG1	3	124770954	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	138691	124770954	73251476	1789	70034											
ALDH1L1	10840	broad.mit.edu	37	chr3	125874333	125874333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgccctcagcgatcagcCtcacggcctgcacctgggga	11	16	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125874333	A	A	125874333	3	1	61	1	0	0	0	0	1	0	0	0	494	681	24	2	2242	2	ALDH1L1	3	125874333	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1103379	125874333	72148097	1790	70035											
ZXDC	79364	broad.mit.edu	37	chr3	126157259	126157259	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatagtgcttcctgggaactGggtggcctccggtccagcag	15	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126157259	C	C	126157259	3	2	61	1	0	0	0	0	1	0	0	0	18381	1357	47	4	44	4	ZXDC	3	126157259	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	282926	126157259	71865171	1791	70036											
PLXNA1	5361	broad.mit.edu	37	chr3	126708358	126708358	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgcgagcaggcgggtgtgGagtaccgcctggtgcaggat	19	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126708358	T	T	126708358	4	4	61	1	0	0	0	0	0	1	0	0	12214	1175	41	3	924	3	PLXNA1	3	126708358	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	551099	126708358	71314072	1792	70037											
PLXNA1	5361	broad.mit.edu	37	chr3	126722193	126722193	+	Frame_Shift_Del	DEL	C	-	-													atcctggtggacctctcaaaCcccggtggccggcctgccct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126722193	-	-	126722193	7	5	61	1	0	1	0	1	0	0	0	0	12214	506	18	0	1408	0	PLXNA1	3	126722193	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	13835	126722193	71300237	1793	70038											
PLXNA1	5361	broad.mit.edu	37	chr3	126739037	126739037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccctgacgccgcatctGgccacagcctttgcagagct	10	17	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126739037	T	T	126739037	1	4	61	0	1	0	0	0	0	0	0	0	12214	1363	47	2		2	PLXNA1	3	126739037	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16844	126739037	71283393	1794	70039											
PODXL2	50512	broad.mit.edu	37	chr3	127390196	127390196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgctcccccatccccaCccgagcccaatgcaaccacc	5	23	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127390196	A	A	127390196	1	1	61	0	1	0	0	0	0	0	0	0	12276	522	18	3		3	PODXL2	3	127390196	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	651159	127390196	70632234	1795	70040											
MGLL	11343	broad.mit.edu	37	chr3	127529387	127529388	+	Intron	DEL	AC	-	-													aacgtccctctgaaatcccaAcacagaatccacagccttca					rs34730307		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127529388	-	-	127529387	6	5	61	0	1	1	0	1	0	0	0	0	9649	58	2	0		0	MGLL	3	127529387	Intron	DEL	AC	TCGA-17-Z031-01A-01W-0746-08	139191	127529387	70493043	1796	70041											
EEFSEC	60678	broad.mit.edu	37	chr3	128060514	128060514	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagggccattgtcctcggCagcagtgggccctggtggag	17	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128060514	G	G	128060514	3	3	61	1	0	0	0	0	1	0	0	0	4971	711	25	4	1243	4	EEFSEC	3	128060514	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	531127	128060514	69961916	1797	70042											
DNAJB8	165721	broad.mit.edu	37	chr3	128181684	128181684	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaattctccaaagcctgcCgagaaggcccccctcaggcc	10	16	2	1	rs148940950	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128181684	A	A	128181684	2	1	61	1	0	0	0	0	0	0	0	1	4666	639	23	1		1	DNAJB8	3	128181684	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	121170	128181684	69840746	1798	70043											
GATA2	2624	broad.mit.edu	37	chr3	128200750	128200750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggtggttgtcgtctgaCaatttgcacaacaggtgccg	14	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128200750	A	A	128200750	3	1	61	1	0	0	0	0	1	0	0	0	6316	478	17	3	395	3	GATA2	3	128200750	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19066	128200750	69821680	1799	70044											
RAB43	339122	broad.mit.edu	37	chr3	128877199	128877199	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtaaagaagggattttGccatgttgcccagactggtc	11	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128877199	C	C	128877199	1	2	61	0	1	0	0	0	0	0	0	0	13053	1334	46	4		4	RAB43	3	128877199	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	676449	128877199	69145231	1800	70045											
COPG	22820	broad.mit.edu	37	chr3	128995987	128995987	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagacagtgactttcacagtGaaatccctcactcagggatt	9	10	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128995987	A	A	128995987	1	1	61	0	1	0	0	0	0	0	0	0	3763	1305	45	4		4	COPG	3	128995987	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	118788	128995987	69026443	1801	70046											
IFT122	55764	broad.mit.edu	37	chr3	129226688	129226688	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctaaagagcagcagactgGatggaatgtaacccactggt	11	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129226688	A	A	129226688	1	1	61	0	1	0	0	0	0	0	0	0	7625	1189	41	4		4	IFT122	3	129226688	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	230701	129226688	68795742	1802	70047											
IFT122	55764	broad.mit.edu	37	chr3	129233292	129233292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcctacaggctggcccgGcacgcctatgacaagctgcg	14	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129233292	T	T	129233292	2	4	61	1	0	0	0	0	0	0	0	1	7625	1190	42	3		3	IFT122	3	129233292	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6604	129233292	68789138	1803	70048											
NEK11	79858	broad.mit.edu	37	chr3	130987390	130987390	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctctgctgcaggtctgctgGagtttgctggaggtccactc	13	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130987390	T	T	130987390	1	4	61	0	1	0	0	0	0	0	0	0	10418	1189	41	3		3	NEK11	3	130987390	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1754098	130987390	67035040	1804	70049											
CPNE4	131034	broad.mit.edu	37	chr3	131320629	131320629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattacatgccccagagatgGtgcaagtatctcaaagcact	9	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131320629	T	T	131320629	1	4	61	0	1	0	0	0	0	0	0	0	3846	1276	44	3		3	CPNE4	3	131320629	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	333239	131320629	66701801	1805	70050											
CPNE4	131034	broad.mit.edu	37	chr3	131807560	131807564	+	Intron	DEL	AGGGG	-	-													aggaaggaaggaaggaaggaAggggaagggaagggaaggga					rs6439342		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131807564	-	-	131807560	6	5	61	0	1	1	0	1	0	0	0	0	3846	87	3	0		0	CPNE4	3	131807560	Intron	DEL	AGGGG	TCGA-17-Z031-01A-01W-0746-08	486931	131807560	66214870	1806	70051											
CPNE4	131034	broad.mit.edu	37	chr3	131875127	131875127	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgagcctagattagcaaAttcccttcatattcaccatg	5	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131875127	C	C	131875127	1	2	61	0	1	0	0	0	0	0	0	0	3846	116	4	5		5	CPNE4	3	131875127	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	67567	131875127	66147303	1807	70052											
CPNE4	131034	broad.mit.edu	37	chr3	131894741	131894741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagttaccatgatgcagGtggaggaaaaacctgtcaca	10	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131894741	T	T	131894741	1	4	61	0	1	0	0	0	0	0	0	0	3846	1276	44	3		3	CPNE4	3	131894741	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19614	131894741	66127689	1808	70053											
DNAJC13	23317	broad.mit.edu	37	chr3	132172986	132172986	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagggcaagtacggaaatAttcttcaacagagaggtatt	10	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132172986	T	T	132172986	3	4	61	1	0	0	0	0	1	0	0	0	4672	449	16	5	947	5	DNAJC13	3	132172986	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	278245	132172986	65849444	1809	70054											
DNAJC13	23317	broad.mit.edu	37	chr3	132203429	132203429	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacgtgagaaaatgttttcTagggatcaagacaatgccat	10	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132203429	C	C	132203429	1	2	61	0	1	0	0	0	0	0	0	0	4672	1537	53	5		5	DNAJC13	3	132203429	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	30443	132203429	65819001	1810	70055											
NPHP3	27031	broad.mit.edu	37	chr3	132427137	132427137	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattttgtgtgctatactgCattgtggcagcaagcagtta	11	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132427137	T	T	132427137	1	4	61	0	1	0	0	0	0	0	0	0	10675	725	25	4		4	NPHP3	3	132427137	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	223708	132427137	65595293	1811	70056											
TOPBP1	11073	broad.mit.edu	37	chr3	133362840	133362840	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatatccttcgatactttaTttcaaccactagtgttgtct	5	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133362840	C	C	133362840	1	2	61	0	1	0	0	0	0	0	0	0	16493	1508	52	5		5	TOPBP1	3	133362840	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	935703	133362840	64659590	1812	70057											
TF	7018	broad.mit.edu	37	chr3	133472629	133472629	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttttacaggcaggttttgGatatcagatataatgaacat	9	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133472629	C	C	133472629	1	2	61	0	1	0	0	0	0	0	0	0	15908	1189	41	4		4	TF	3	133472629	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	109789	133472629	64549801	1813	70058											
SLCO2A1	6578	broad.mit.edu	37	chr3	133698552	133698553	+	Intron	DEL	CT	-	-													aggggccccggcaggctgacCtctgtttcctcgcctgttat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133698553	-	-	133698552	6	5	61	0	1	1	0	1	0	0	0	0	14840	696	24	0		0	SLCO2A1	3	133698552	Intron	DEL	CT	TCGA-17-Z031-01A-01W-0746-08	225923	133698552	64323878	1814	70059											
CEP63	80254	broad.mit.edu	37	chr3	134264753	134264753	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactaggttctacaatccatActttcttccctactttataa	2	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134264753	T	T	134264753	1	4	61	0	1	0	0	0	0	0	0	0	3287	406	14	5		5	CEP63	3	134264753	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	566201	134264753	63757677	1815	70060											
EPHB1	2047	broad.mit.edu	37	chr3	134859777	134859777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattaacatcttctctgagCggatgtgaaagatggaggaa	11	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134859777	A	A	134859777	1	1	61	0	1	0	0	0	0	0	0	0	5216	783	27	3		3	EPHB1	3	134859777	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	595024	134859777	63162653	1816	70061											
EPHB1	2047	broad.mit.edu	37	chr3	134911723	134911723	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaggtgaatgatggctgggGagaggggttccatgagcaca	18	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134911723	T	T	134911723	1	4	61	0	1	0	0	0	0	0	0	0	5216	1189	41	3		3	EPHB1	3	134911723	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	51946	134911723	63110707	1817	70062											
STAG1	10274	broad.mit.edu	37	chr3	136141757	136141757	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatagtacaatgaaagcaaActcagtgacataacaaaact	5	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136141757	C	C	136141757	1	2	61	0	1	0	0	0	0	0	0	0	15360	58	2	5		5	STAG1	3	136141757	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1230034	136141757	61880673	1818	70063											
SOX14	8403	broad.mit.edu	37	chr3	137483920	137483920	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtcttccccttgccctaCctgggcgacacggacccgct	9	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137483920	A	A	137483920	4	1	61	1	0	0	0	0	0	1	0	0	15059	518	18	3	296	3	SOX14	3	137483920	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1342163	137483920	60538510	1819	70064											
ARMC8	25852	broad.mit.edu	37	chr3	137989096	137989096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaaaatctggctattttGttctagttttctaatgacta	5	6	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137989096	T	T	137989096	1	4	61	0	1	0	0	0	0	0	0	0	961	1392	48	3		3	ARMC8	3	137989096	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	505176	137989096	60033334	1820	70065											
CLSTN2	64084	broad.mit.edu	37	chr3	139713234	139713234	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttacacaaccttggtagtCatcatacccacttaactgat	4	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139713234	A	A	139713234	1	1	61	0	1	0	0	0	0	0	0	0	3594	841	29	3		3	CLSTN2	3	139713234	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1724138	139713234	58309196	1821	70066											
CLSTN2	64084	broad.mit.edu	37	chr3	140122633	140122633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctatgactgtggtgctgGgccccacgagacagcctgga	15	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140122633	T	T	140122633	3	4	61	1	0	0	0	0	1	0	0	0	3594	1232	43	2	405	2	CLSTN2	3	140122633	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	409399	140122633	57899797	1822	70067											
CLSTN2	64084	broad.mit.edu	37	chr3	140124854	140124854	+	Intron	DEL	A	-	-													atagacatgggcctgtccacAtacagctcatcatctagcag					rs34368982		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140124854	-	-	140124854	6	5	61	0	1	1	0	1	0	0	0	0	3594	232	8	0		0	CLSTN2	3	140124854	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	2221	140124854	57897576	1823	70068											
ZBTB38	253461	broad.mit.edu	37	chr3	141053322	141053322	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttccttccttccttctttCctttcttccttccttccttc	0	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141053322	T	T	141053322	1	4	61	0	1	0	0	0	0	0	0	0	17665	870	30	4		4	ZBTB38	3	141053322	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	928468	141053322	56969108	1824	70069											
RASA2	5922	broad.mit.edu	37	chr3	141305620	141305620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtttatgctttattgtgGggtttttcctggttctcagt	11	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141305620	T	T	141305620	1	4	61	0	1	0	0	0	0	0	0	0	13169	1247	43	2		2	RASA2	3	141305620	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	252298	141305620	56716810	1825	70070											
GRK7	131890	broad.mit.edu	37	chr3	141497196	141497196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaggcccggaagccctcgGactgcgacagcaaagagctg	14	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141497196	T	T	141497196	3	4	61	1	0	0	0	0	1	0	0	0	6860	1174	41	3	72	3	GRK7	3	141497196	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	191576	141497196	56525234	1826	70071											
GRK7	131890	broad.mit.edu	37	chr3	141521680	141521680	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcatccccctcatccactCtctcctgtgcttcctccttg	4	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141521680	G	G	141521680	1	3	61	0	1	0	0	0	0	0	0	0	6860	928	32	4		4	GRK7	3	141521680	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24484	141521680	56500750	1827	70072											
TFDP2	7029	broad.mit.edu	37	chr3	141682713	141682713	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtattgatgattatgaaTggcagctgaatggtagagtt	12	3	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141682713	A	A	141682713	2	1	61	1	0	0	0	0	0	0	0	1	15921	1451	51	5		5	TFDP2	3	141682713	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	161033	141682713	56339717	1828	70073											
TFDP2	7029	broad.mit.edu	37	chr3	141688761	141688761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccatcttaaggcagagcaCgtggatggcaacaagctagg	13	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141688761	A	A	141688761	1	1	61	0	1	0	0	0	0	0	0	0	15921	551	19	3		3	TFDP2	3	141688761	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6048	141688761	56333669	1829	70074											
XRN1	54464	broad.mit.edu	37	chr3	142102103	142102103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaagtaactgctttaaaCtagagaaaaatgtatcagta	7	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142102103	A	A	142102103	1	1	61	0	1	0	0	0	0	0	0	0	17586	580	20	3		3	XRN1	3	142102103	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	413342	142102103	55920327	1830	70075											
XRN1	54464	broad.mit.edu	37	chr3	142166802	142166802	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccatttcgatcgtcaacacTaatcccagtcagggccaaac	6	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142166802	C	C	142166802	1	2	61	0	1	0	0	0	0	0	0	0	17586	1537	53	5		5	XRN1	3	142166802	5'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	64699	142166802	55855628	1831	70076											
SR140	23350	broad.mit.edu	37	chr3	142740306	142740307	+	Intron	INS	-	T	T													tataattctttttttctttcINStgccctagttcttgatgatt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142740307	T	T	142740306	6	5	61	0	1	1	1	0	0	0	0	0	15249	928	32	0		0	SR140	3	142740306	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	573504	142740306	55282124	1832	70077											
SR140	23350	broad.mit.edu	37	chr3	142740431	142740431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaatgttgattgatatGctttatgcttttggaagaaa	10	2	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142740431	T	T	142740431	1	4	61	0	1	0	0	0	0	0	0	0	15249	1334	46	3		3	SR140	3	142740431	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	125	142740431	55281999	1833	70078											
SR140	23350	broad.mit.edu	37	chr3	142745957	142745957	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttatatagtggtaggtctGaatccattttctttaactgt	7	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142745957	C	C	142745957	1	2	61	0	1	0	0	0	0	0	0	0	15249	1305	45	4		4	SR140	3	142745957	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5526	142745957	55276473	1834	70079											
SLC9A9	285195	broad.mit.edu	37	chr3	143066413	143066413	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaggaaagggcacccggaTaggggaatcctgtgccctgg	16	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143066413	C	C	143066413	1	2	61	0	1	0	0	0	0	0	0	0	14835	1421	49	5		5	SLC9A9	3	143066413	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	320456	143066413	54956017	1835	70080											
SLC9A9	285195	broad.mit.edu	37	chr3	143160671	143160672	+	Intron	INS	-	TCAT	TCAT													ctaggcagtgtgtcatttacINStcattcatccatccatccat					rs144760598	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCAT	143160672	TCAT	TCAT	143160671	6	5	61	0	1	1	1	0	0	0	0	0	14835	580	20	0		0	SLC9A9	3	143160671	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	94258	143160671	54861759	1836	70081											
SLC9A9	285195	broad.mit.edu	37	chr3	143371170	143371170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtacaggtcagggtcgaCgtgcagttcatggaaaatgg	15	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143371170	A	A	143371170	3	1	61	1	0	0	0	0	1	0	0	0	14835	536	19	3	1299	3	SLC9A9	3	143371170	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	210499	143371170	54651260	1837	70082											
PLSCR4	57088	broad.mit.edu	37	chr3	145912811	145912811	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtaagtggcacagagataAgttggattggtttcaaggct	13	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145912811	C	C	145912811	1	2	61	0	1	0	0	0	0	0	0	0	12207	87	3	5		5	PLSCR4	3	145912811	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2541641	145912811	52109619	1838	70083											
PLSCR2	57047	broad.mit.edu	37	chr3	146201828	146201828	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaaagaagctaagaaccatGatagaaggttataggagctg	11	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146201828	T	T	146201828	1	4	61	0	1	0	0	0	0	0	0	0	12205	1305	45	3		3	PLSCR2	3	146201828	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	289017	146201828	51820602	1839	70084											
ZIC4	84107	broad.mit.edu	37	chr3	147109013	147109013	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgctcgcagccctcgaactCgcatctgaagggcttctcgc	10	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147109013	G	G	147109013	3	3	61	1	0	0	0	0	1	0	0	0	17807	893	31	4	303	4	ZIC4	3	147109013	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	907185	147109013	50913417	1840	70085											
ZIC1	7545	broad.mit.edu	37	chr3	147130340	147130340	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgcgagtttgagggctgtGaccggcgcttcgctaacagc	15	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147130340	T	T	147130340	3	4	61	1	0	0	0	0	1	0	0	0	17804	1290	45	3	1024	3	ZIC1	3	147130340	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21327	147130340	50892090	1841	70086											
AGTR1	185	broad.mit.edu	37	chr3	148458772	148458772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattttatttttattttccCcaggtgtatttgatatagtg	6	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148458772	A	A	148458772	1	1	61	0	1	0	0	0	0	0	0	0	401	638	22	2		2	AGTR1	3	148458772	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1328432	148458772	49563658	1842	70087											
AGTR1	185	broad.mit.edu	37	chr3	148459428	148459428	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgaccaaaaatatactGggtttcctgtttccttttct	7	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148459428	T	T	148459428	2	4	61	1	0	0	0	0	0	0	0	1	401	1335	47	2		2	AGTR1	3	148459428	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	656	148459428	49563002	1843	70088											
CPA3	1359	broad.mit.edu	37	chr3	148586791	148586791	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaaggaatcccaagccatCcagtctgccttggatcaaaa	9	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148586791	A	A	148586791	2	1	61	1	0	0	0	0	0	0	0	1	3823	845	30	3		3	CPA3	3	148586791	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	127363	148586791	49435639	1844	70089											
GYG1	2992	broad.mit.edu	37	chr3	148734347	148734347	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttattaaagtctgggttcGagtgctgacattgttctgat	12	5	2	2	rs116035671	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148734347	T	T	148734347	1	4	61	0	1	0	0	0	0	0	0	0	6970	1073	37	3		3	GYG1	3	148734347	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	147556	148734347	49288083	1845	70090											
CP	1356	broad.mit.edu	37	chr3	148928163	148928163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgttatcagggtagatgGcccctaggaagcaacatgca	13	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148928163	T	T	148928163	3	4	61	1	0	0	0	0	1	0	0	0	3819	1203	42	3	2867	3	CP	3	148928163	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	193816	148928163	49094267	1846	70091											
MED12L	116931	broad.mit.edu	37	chr3	151101514	151101514	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgataacataaagcaatgggGtgttctttctgttttacaga	9	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151101514	A	A	151101514	1	1	61	0	1	0	0	0	0	0	0	0	9522	1276	44	4		4	MED12L	3	151101514	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2173351	151101514	46920916	1847	70092											
MED12L	116931	broad.mit.edu	37	chr3	151107867	151107867	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccttgtggggttacaaccTcgtgggccagccccagcagc	12	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151107867	G	G	151107867	3	3	61	1	0	0	0	0	1	0	0	0	9522	1551	54	5	5589	5	MED12L	3	151107867	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6353	151107867	46914563	1848	70093											
IGSF10	285313	broad.mit.edu	37	chr3	151156432	151156432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcagctgttagcaatgaGggaaactgttttactcagga	12	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151156432	T	T	151156432	1	4	61	0	1	0	0	0	0	0	0	0	7667	1015	35	2		2	IGSF10	3	151156432	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	48565	151156432	46865998	1849	70094											
IGSF10	285313	broad.mit.edu	37	chr3	151163146	151163146	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaacagattagagtagatGaagtgagtggttccaattgt	12	3	0	5	rs146031878		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151163146	A	A	151163146	2	1	61	1	0	0	0	0	0	0	0	1	7667	1281	45	4		4	IGSF10	3	151163146	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6714	151163146	46859284	1850	70095											
SGEF	26084	broad.mit.edu	37	chr3	153847407	153847407	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaggaaaaggcccttgacAttgattctgatgaagagtca	10	7	2	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153847407	G	G	153847407	3	3	61	1	0	0	0	0	1	0	0	0	14318	217	8	5	1178	5	SGEF	3	153847407	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2684261	153847407	44175023	1851	70096											
GPR149	344758	broad.mit.edu	37	chr3	154070676	154070676	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaacatatacaaatccctgtCcagctctacctgtgcatcca	4	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154070676	T	T	154070676	1	4	61	0	1	0	0	0	0	0	0	0	6719	870	30	4		4	GPR149	3	154070676	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	223269	154070676	43951754	1852	70097											
PLCH1	23007	broad.mit.edu	37	chr3	155282834	155282834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttgcagaggggctgatcCatgtcttggtacacttcatg	12	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155282834	A	A	155282834	3	1	61	1	0	0	0	0	1	0	0	0	12132	594	21	2	4261	2	PLCH1	3	155282834	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1212158	155282834	42739596	1853	70098											
PLCH1	23007	broad.mit.edu	37	chr3	155301124	155301124	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactgttttaaatgactcaTagataagatttttgtgaact	6	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155301124	C	C	155301124	1	2	61	0	1	0	0	0	0	0	0	0	12132	1421	49	5		5	PLCH1	3	155301124	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18290	155301124	42721306	1854	70099											
PLCH1	23007	broad.mit.edu	37	chr3	155301142	155301142	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagataagatttttgtgaActagtgatatttaccacctt	6	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155301142	C	C	155301142	1	2	61	0	1	0	0	0	0	0	0	0	12132	58	2	5		5	PLCH1	3	155301142	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	18	155301142	42721288	1855	70100											
KCNAB1	7881	broad.mit.edu	37	chr3	156009877	156009877	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcctcagcatcacatttctCtcaaagagtccaccgcaaag	6	15	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156009877	T	T	156009877	1	4	61	0	1	0	0	0	0	0	0	0	8079	913	32	4		4	KCNAB1	3	156009877	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	708735	156009877	42012553	1856	70101											
KCNAB1	7881	broad.mit.edu	37	chr3	156160483	156160483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagccagccatccccatcCcagcctttcctaatgaaaga	5	17	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156160483	A	A	156160483	1	1	61	0	1	0	0	0	0	0	0	0	8079	638	22	2		2	KCNAB1	3	156160483	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	150606	156160483	41861947	1857	70102											
VEPH1	79674	broad.mit.edu	37	chr3	157188013	157188013	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacagtatctaaatgctgcAgaagcattggctcttggttc	9	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157188013	G	G	157188013	1	3	61	0	1	0	0	0	0	0	0	0	17281	203	7	5		5	VEPH1	3	157188013	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1027530	157188013	40834417	1858	70103											
VEPH1	79674	broad.mit.edu	37	chr3	157188025	157188025	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgctgcagaagcattggcTcttggttcacagacatcaca	9	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157188025	C	C	157188025	1	2	61	0	1	0	0	0	0	0	0	0	17281	1566	54	5		5	VEPH1	3	157188025	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	12	157188025	40834405	1859	70104											
MFSD1	64747	broad.mit.edu	37	chr3	158531730	158531730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgatttaaaatgctgttGtttttttttcccttctcatt	4	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158531730	T	T	158531730	1	4	61	0	1	0	0	0	0	0	0	0	9620	1392	48	3		3	MFSD1	3	158531730	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1343705	158531730	39490700	1860	70105											
SCHIP1	29970	broad.mit.edu	37	chr3	158867775	158867775	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctttgtctcttctttgcActgtctcttttgcctaaaat	4	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158867775	G	G	158867775	1	3	61	0	1	0	0	0	0	0	0	0	14017	174	6	5		5	SCHIP1	3	158867775	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	336045	158867775	39154655	1861	70106											
SCHIP1	29970	broad.mit.edu	37	chr3	158921692	158921692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctatgagaaggttgtgtcCctgtgtggtaagagggcagg	18	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158921692	A	A	158921692	1	1	61	0	1	0	0	0	0	0	0	0	14017	638	22	2		2	SCHIP1	3	158921692	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53917	158921692	39100738	1862	70107											
PPM1L	151742	broad.mit.edu	37	chr3	160530504	160530504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctggaaaggtgggattGcttggcaagtagccttagag	14	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160530504	T	T	160530504	1	4	61	0	1	0	0	0	0	0	0	0	12445	1334	46	3		3	PPM1L	3	160530504	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1608812	160530504	37491926	1863	70108											
PPM1L	151742	broad.mit.edu	37	chr3	160552271	160552271	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtgtatgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	19	0	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160552271	A	A	160552271	1	1	61	0	1	0	0	0	0	0	0	0	12445	1392	48	4		4	PPM1L	3	160552271	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21767	160552271	37470159	1864	70109											
PPM1L	151742	broad.mit.edu	37	chr3	160704015	160704015	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatctggtatcttggtcatTaacccacttttgctacccat	5	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160704015	G	G	160704015	1	3	61	0	1	0	0	0	0	0	0	0	12445	1769	61	5		5	PPM1L	3	160704015	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	151744	160704015	37318415	1865	70110											
SI	6476	broad.mit.edu	37	chr3	164714304	164714304	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaagaaaatactgaaagtAaatgtagtaattacatactc	6	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164714304	G	G	164714304	1	3	61	0	1	0	0	0	0	0	0	0	14410	377	13	5		5	SI	3	164714304	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4010289	164714304	33308126	1866	70111											
SI	6476	broad.mit.edu	37	chr3	164739220	164739220	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctgattgctgacatagcAtgtacatatcatgaactaag	7	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164739220	T	T	164739220	1	4	61	0	1	0	0	0	0	0	0	0	14410	232	8	5		5	SI	3	164739220	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	24916	164739220	33283210	1867	70112											
SI	6476	broad.mit.edu	37	chr3	164741603	164741603	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcattgccagaaattataaGccttgtaatattttactctt	4	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164741603	A	A	164741603	1	1	61	0	1	0	0	0	0	0	0	0	14410	986	34	4		4	SI	3	164741603	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2383	164741603	33280827	1868	70113											
SI	6476	broad.mit.edu	37	chr3	164758937	164758937	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagtatgagtgaaaattAaagtagaagcattttaatct	7	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164758937	T	T	164758937	1	4	61	0	1	0	0	0	0	0	0	0	14410	377	13	5		5	SI	3	164758937	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	17334	164758937	33263493	1869	70114											
SI	6476	broad.mit.edu	37	chr3	164760931	164760931	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaagttcttctgtggtTtcagccacaaatccacagat	7	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164760931	C	C	164760931	2	2	61	1	0	0	0	0	0	0	0	1	14410	1838	64	5		5	SI	3	164760931	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1994	164760931	33261499	1870	70115											
SI	6476	broad.mit.edu	37	chr3	164777671	164777671	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttgatatatattcccacgGaccctttattctacttacaa	3	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164777671	T	T	164777671	1	4	61	0	1	0	0	0	0	0	0	0	14410	1189	41	3		3	SI	3	164777671	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16740	164777671	33244759	1871	70116											
WDR49	151790	broad.mit.edu	37	chr3	167246875	167246875	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcaaccatccatcaagatCtcctgtggtaaggtatcgat	7	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167246875	A	A	167246875	3	1	61	1	0	0	0	0	1	0	0	0	17429	913	32	3	802	3	WDR49	3	167246875	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2469204	167246875	30775555	1872	70117											
LRRIQ4	344657	broad.mit.edu	37	chr3	169548429	169548429	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagcacaaggtgaggaaacTtagtagattcacagcctagc	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169548429	G	G	169548429	1	3	61	0	1	0	0	0	0	0	0	0	9118	1624	56	5		5	LRRIQ4	3	169548429	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2301554	169548429	28474001	1873	70118											
SAMD7	344658	broad.mit.edu	37	chr3	169646434	169646434	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctttcctgcataatgaatTaggtcaaacttgcattgtgc	7	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169646434	A	A	169646434	1	1	61	0	1	0	0	0	0	0	0	0	13935	1769	61	5		5	SAMD7	3	169646434	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	98005	169646434	28375996	1874	70119											
CLDN11	5010	broad.mit.edu	37	chr3	170441957	170441957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaacagaacatactagccCtggaagaatcaccatatgct	6	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170441957	A	A	170441957	1	1	61	0	1	0	0	0	0	0	0	0	3504	696	24	2		2	CLDN11	3	170441957	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	795523	170441957	27580473	1875	70120											
SLC2A2	6514	broad.mit.edu	37	chr3	170722942	170722942	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaattaatgcttactcaatGtacgtttgttatagcaagac	7	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170722942	A	A	170722942	1	1	61	0	1	0	0	0	0	0	0	0	14658	1392	48	4		4	SLC2A2	3	170722942	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	280985	170722942	27299488	1876	70121											
SLC2A2	6514	broad.mit.edu	37	chr3	170723710	170723710	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaaaacaataggaagaaaGaaaaaccatccacagactta	6	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170723710	T	T	170723710	1	4	61	0	1	0	0	0	0	0	0	0	14658	957	33	3		3	SLC2A2	3	170723710	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	768	170723710	27298720	1877	70122											
SLC2A2	6514	broad.mit.edu	37	chr3	170736366	170736366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtcatatccaaactggaagGaacccagcacagcagtgatg	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170736366	T	T	170736366	3	4	61	1	0	0	0	0	1	0	0	0	14658	1174	41	3	1552	3	SLC2A2	3	170736366	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12656	170736366	27286064	1878	70123											
FNDC3B	64778	broad.mit.edu	37	chr3	172052793	172052793	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagttcttgtttgtacgacGagtcctgacaggcctggacc	12	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172052793	A	A	172052793	2	1	61	1	0	0	0	0	0	0	0	1	6028	1045	37	4		4	FNDC3B	3	172052793	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1316427	172052793	25969637	1879	70124											
FNDC3B	64778	broad.mit.edu	37	chr3	172061757	172061757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatggattcttttgtaaGggagatactgaggccggcca	15	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172061757	T	T	172061757	1	4	61	0	1	0	0	0	0	0	0	0	6028	1015	35	2		2	FNDC3B	3	172061757	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8964	172061757	25960673	1880	70125											
TNFSF10	8743	broad.mit.edu	37	chr3	172229317	172229317	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaggatggatgagtggatGagaacacagagaaggagaat	16	3	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172229317	A	A	172229317	1	1	61	0	1	0	0	0	0	0	0	0	16424	1305	45	4		4	TNFSF10	3	172229317	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	167560	172229317	25793113	1881	70126											
ECT2	1894	broad.mit.edu	37	chr3	172537829	172537829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtcttgtacttaattGttacagtaatttgtaaaatg	7	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172537829	T	T	172537829	1	4	61	0	1	0	0	0	0	0	0	0	4941	1392	48	3		3	ECT2	3	172537829	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	308512	172537829	25484601	1882	70127											
NLGN1	22871	broad.mit.edu	37	chr3	173247325	173247325	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgaagaggctgcaccagcTgcatgccctagatcggcaag	13	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173247325	A	A	173247325	1	1	61	0	1	0	0	0	0	0	0	0	10556	1595	55	5		5	NLGN1	3	173247325	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	709496	173247325	24775105	1883	70128											
NAALADL2	254827	broad.mit.edu	37	chr3	174777664	174777664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgactttaccaacatagGgcaagacacgagttcacagg	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174777664	T	T	174777664	1	4	61	0	1	0	0	0	0	0	0	0	10224	1247	43	2		2	NAALADL2	3	174777664	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1530339	174777664	23244766	1884	70129											
KCNMB2	10242	broad.mit.edu	37	chr3	178389249	178389249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctgcccacacatgacaGgtgctcccatctgcctggca	9	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178389249	T	T	178389249	1	4	61	0	1	0	0	0	0	0	0	0	8145	1015	35	2		2	KCNMB2	3	178389249	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3611585	178389249	19633181	1885	70130											
MRPL47	57129	broad.mit.edu	37	chr3	179306784	179306784	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgtttctcacgttccagtCtagaataaaaaaagcgtaac	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179306784	T	T	179306784	1	4	61	0	1	0	0	0	0	0	0	0	9905	927	32	4		4	MRPL47	3	179306784	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	917535	179306784	18715646	1886	70131											
USP13	8975	broad.mit.edu	37	chr3	179419013	179419013	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgggggtggggtggggtGggaaaagccggttgaatgag	24	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179419013	A	A	179419013	1	1	61	0	1	0	0	0	0	0	0	0	17170	1363	47	4		4	USP13	3	179419013	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	112229	179419013	18603417	1887	70132											
PEX5L	51555	broad.mit.edu	37	chr3	179526053	179526053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcttgctgtgctgtgctGtcttacctctggccgaacag	11	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179526053	T	T	179526053	1	4	61	0	1	0	0	0	0	0	0	0	11844	1392	48	3		3	PEX5L	3	179526053	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	107040	179526053	18496377	1888	70133											
PEX5L	51555	broad.mit.edu	37	chr3	179597885	179597885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagactggttcactcaggtCgaggagatctaagccagtgg	14	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179597885	A	A	179597885	3	1	61	1	0	0	0	0	1	0	0	0	11844	884	31	3	1587	3	PEX5L	3	179597885	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	71832	179597885	18424545	1889	70134											
CCDC39	339829	broad.mit.edu	37	chr3	180366116	180366116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctttcttaaacagcacaCcttttatgaggttcagttga	8	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180366116	A	A	180366116	3	1	61	1	0	0	0	0	1	0	0	0	2838	507	18	3	1670	3	CCDC39	3	180366116	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	768231	180366116	17656314	1890	70135											
ATP11B	23200	broad.mit.edu	37	chr3	182602614	182602614	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagatttaagttcctctcCaaattgctttttgttcatgg	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182602614	G	G	182602614	2	3	61	1	0	0	0	0	0	0	0	1	1124	581	21	4		4	ATP11B	3	182602614	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2236498	182602614	15419816	1891	70136											
DCUN1D1	54165	broad.mit.edu	37	chr3	182665025	182665025	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcaaaaattttcattaCcttcttcatcataattagac	4	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182665025	A	A	182665025	5	1	61	1	0	0	0	0	0	0	1	0	4346	521	18	3	86	3	DCUN1D1	3	182665025	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	62411	182665025	15357405	1892	70137											
MCF2L2	23101	broad.mit.edu	37	chr3	182946001	182946001	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatatgtttttagaccattGatgtttccatttgtccttgc	7	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182946001	T	T	182946001	1	4	61	0	1	0	0	0	0	0	0	0	9473	1305	45	3		3	MCF2L2	3	182946001	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	280976	182946001	15076429	1893	70138											
HTR3E	285242	broad.mit.edu	37	chr3	183822695	183822695	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggacatcttctacttcccCttcgaccagcagaactgcac	6	16	2	1	rs145422207		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183822695	T	T	183822695	2	4	61	1	0	0	0	0	0	0	0	1	7518	668	24	4		4	HTR3E	3	183822695	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	876694	183822695	14199735	1894	70139											
ABCF3	55324	broad.mit.edu	37	chr3	183911183	183911183	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacattctggatgaacccacAaaccacctggacatggagac	8	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183911183	T	T	183911183	2	4	61	1	0	0	0	0	0	0	0	1	67	117	5	5		5	ABCF3	3	183911183	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	88488	183911183	14111247	1895	70140											
ECE2	9718	broad.mit.edu	37	chr3	184002974	184002974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggacaggcccagccacaCagaacaacatttggtaatgc	9	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184002974	A	A	184002974	1	1	61	0	1	0	0	0	0	0	0	0	4930	493	17	3		3	ECE2	3	184002974	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	91791	184002974	14019456	1896	70141											
EIF4G1	1981	broad.mit.edu	37	chr3	184039242	184039242	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctattcctggggacactatGacaactatacaaatgtctgt	7	9	2	1	rs144947145	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184039242	C	C	184039242	3	2	61	1	0	0	0	0	1	0	0	0	5078	1290	45	4	900	4	EIF4G1	3	184039242	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36268	184039242	13983188	1897	70142											
POLR2H	5437	broad.mit.edu	37	chr3	184083032	184083032	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtgagggagtggagaagGtaatacttgaaatatgcctt	14	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184083032	C	C	184083032	1	2	61	0	1	0	0	0	0	0	0	0	12316	1276	44	4		4	POLR2H	3	184083032	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43790	184083032	13939398	1898	70143											
EPHB3	2049	broad.mit.edu	37	chr3	184295275	184295275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagaacctcaaggggcaGgaggaggccttgggctgagc	18	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184295275	T	T	184295275	1	4	61	0	1	0	0	0	0	0	0	0	5218	1015	35	2		2	EPHB3	3	184295275	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	212243	184295275	13727155	1899	70144											
EPHB3	2049	broad.mit.edu	37	chr3	184297520	184297520	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgactgaaacagcctggccGccgagaggtgtttgtggcca	14	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184297520	A	A	184297520	3	1	61	1	0	0	0	0	1	0	0	0	5218	1087	38	4	2012	4	EPHB3	3	184297520	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2245	184297520	13724910	1900	70145											
VPS8	23355	broad.mit.edu	37	chr3	184580512	184580512	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtagtatattgtacctActgttctctggcctgtcact	8	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184580512	G	G	184580512	1	3	61	0	1	0	0	0	0	0	0	0	17345	406	14	5		5	VPS8	3	184580512	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	282992	184580512	13441918	1901	70146											
LIPH	200879	broad.mit.edu	37	chr3	185229488	185229488	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatgtggtgggttcactGgaaggaagaagtaatactga	14	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185229488	C	C	185229488	1	2	61	0	1	0	0	0	0	0	0	0	8897	1363	47	4		4	LIPH	3	185229488	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	648976	185229488	12792942	1902	70147											
LIPH	200879	broad.mit.edu	37	chr3	185245251	185245251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctggcggtgtcactgacCcacaaggaaaggagcgttac	13	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185245251	A	A	185245251	1	1	61	0	1	0	0	0	0	0	0	0	8897	638	22	2		2	LIPH	3	185245251	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15763	185245251	12777179	1903	70148											
ETV5	2119	broad.mit.edu	37	chr3	185766646	185766646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagacgtatcgctctccagCcacctgcgggagaacacaca	10	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185766646	A	A	185766646	3	1	61	1	0	0	0	0	1	0	0	0	5324	739	26	3	221	3	ETV5	3	185766646	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	521395	185766646	12255784	1904	70149											
ETV5	2119	broad.mit.edu	37	chr3	185798784	185798784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattcagcttgatggctaCttccagagcctttctgggca	9	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185798784	A	A	185798784	1	1	61	0	1	0	0	0	0	0	0	0	5324	580	20	3		3	ETV5	3	185798784	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32138	185798784	12223646	1905	70150											
TBCCD1	55171	broad.mit.edu	37	chr3	186272162	186272162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctgttgtgtccccttcCatttcaaagggaataataaa	6	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186272162	A	A	186272162	3	1	61	1	0	0	0	0	1	0	0	0	15754	594	21	2	256	2	TBCCD1	3	186272162	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	473378	186272162	11750268	1906	70151											
HRG	3273	broad.mit.edu	37	chr3	186394883	186394883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctcatttgggacatcccttCcactggggtgggcatgagcg	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186394883	A	A	186394883	3	1	61	1	0	0	0	0	1	0	0	0	7421	854	30	3	815	3	HRG	3	186394883	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	122721	186394883	11627547	1907	70152											
RFC4	5984	broad.mit.edu	37	chr3	186507930	186507930	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtgcaaagtacctacttaCggcaagtttttctgtgataa	8	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186507930	G	G	186507930	5	3	61	1	0	0	0	0	0	0	1	0	13355	550	19	4	102	4	RFC4	3	186507930	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	113047	186507930	11514500	1908	70153											
MASP1	5648	broad.mit.edu	37	chr3	186946307	186946307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgggtatcttgtgccCgccagtacctcctcctcttg	8	16	3	0	rs116597062	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186946307	A	A	186946307	1	1	61	0	1	0	0	0	0	0	0	0	9414	667	23	1		1	MASP1	3	186946307	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	438377	186946307	11076123	1909	70154											
LPP	4026	broad.mit.edu	37	chr3	187925566	187925567	+	Intron	INS	-	C	C													tatttccttctgtcggaatgINSccctttgttccttcatctgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187925567	C	C	187925566	6	5	61	0	1	1	1	0	0	0	0	0	9010	1334	46	0		0	LPP	3	187925566	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	979259	187925566	10096864	1910	70155											
TPRG1	285386	broad.mit.edu	37	chr3	188727703	188727703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccaggtatcaagcccagCatccactagctatttttcct	5	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188727703	A	A	188727703	1	1	61	0	1	0	0	0	0	0	0	0	16542	725	25	3		3	TPRG1	3	188727703	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	802137	188727703	9294727	1911	70156											
TPRG1	285386	broad.mit.edu	37	chr3	188748486	188748486	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgccagtcacctaccctgagGagtggagtgtacaacctgtt	11	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188748486	T	T	188748486	1	4	61	0	1	0	0	0	0	0	0	0	16542	1189	41	3		3	TPRG1	3	188748486	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20783	188748486	9273944	1912	70157											
CLDN16	10686	broad.mit.edu	37	chr3	190126181	190126181	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactttggttttgcacaataTatttcttggtatccaatata	5	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190126181	C	C	190126181	3	2	61	1	0	0	0	0	1	0	0	0	3508	1406	49	5	685	5	CLDN16	3	190126181	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1377695	190126181	7896249	1913	70158											
TMEM207	131920	broad.mit.edu	37	chr3	190167608	190167608	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcttgacatatttaaaggAcagtcaacttaggatagtgg	10	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190167608	G	G	190167608	1	3	61	0	1	0	0	0	0	0	0	0	16255	290	10	5		5	TMEM207	3	190167608	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	41427	190167608	7854822	1914	70159											
IL1RAP	3556	broad.mit.edu	37	chr3	190326990	190326990	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaggaaaattagactacAttttattctctctaatggct	7	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190326990	G	G	190326990	1	3	61	0	1	0	0	0	0	0	0	0	7730	232	8	5		5	IL1RAP	3	190326990	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	159382	190326990	7695440	1915	70160											
UTS2D	257313	broad.mit.edu	37	chr3	190986194	190986194	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttatctttttttgcatccaGagaaaaagctttaaacacag	5	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190986194	T	T	190986194	1	4	61	0	1	0	0	0	0	0	0	0	17232	957	33	3		3	UTS2D	3	190986194	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	659204	190986194	7036236	1916	70161											
ATP13A4	84239	broad.mit.edu	37	chr3	193158420	193158420	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaagatggtcccattgaTcaatatctgtaaggaaccca	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193158420	A	A	193158420	3	1	61	1	0	0	0	0	1	0	0	0	1130	1435	50	5	1184	5	ATP13A4	3	193158420	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2172226	193158420	4864010	1917	70162											
ATP13A4	84239	broad.mit.edu	37	chr3	193210605	193210605	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatagagcattataatatTttctgatattaatccattaa	3	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193210605	C	C	193210605	1	2	61	0	1	0	0	0	0	0	0	0	1130	1856	64	5		5	ATP13A4	3	193210605	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	52185	193210605	4811825	1918	70163											
CPN2	1370	broad.mit.edu	37	chr3	194062798	194062798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccagtttgccaaacaCaccctgggggagaccagaga	12	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194062798	A	A	194062798	3	1	61	1	0	0	0	0	1	0	0	0	3842	478	17	3	1007	3	CPN2	3	194062798	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	852193	194062798	3959632	1919	70164											
CPN2	1370	broad.mit.edu	37	chr3	194062982	194062982	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctggttcccctgcaggtgGagggactccagggcagccag	16	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194062982	T	T	194062982	2	4	61	1	0	0	0	0	0	0	0	1	3842	1161	41	3		3	CPN2	3	194062982	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	184	194062982	3959448	1920	70165											
TMEM44	93109	broad.mit.edu	37	chr3	194330596	194330596	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgcaacaacttccccagaTggctctaaaatgcacatctg	6	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194330596	A	A	194330596	1	1	61	0	1	0	0	0	0	0	0	0	16291	1479	51	5		5	TMEM44	3	194330596	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	267614	194330596	3691834	1921	70166											
C3orf21	152002	broad.mit.edu	37	chr3	194840394	194840396	+	Intron	DEL	GAG	-	-													agctggatgcccccagatgaGaggaggcctccgagggctgt					rs147025961		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	194840396	-	-	194840394	6	5	61	0	1	1	0	1	0	0	0	0	2236	957	33	0		0	C3orf21	3	194840394	Intron	DEL	GAG	TCGA-17-Z031-01A-01W-0746-08	509798	194840394	3182036	1922	70167											
ACAP2	23527	broad.mit.edu	37	chr3	195027169	195027169	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaacgatgctacatacagtCatataacgttgcaactaaaa	5	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195027169	A	A	195027169	1	1	61	0	1	0	0	0	0	0	0	0	119	841	29	3		3	ACAP2	3	195027169	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	186775	195027169	2995261	1923	70168											
ACAP2	23527	broad.mit.edu	37	chr3	195029512	195029512	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtttcatttattaacaccTaccttaaattttttctggta	5	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195029512	C	C	195029512	1	2	61	0	1	0	0	0	0	0	0	0	119	1537	53	5		5	ACAP2	3	195029512	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2343	195029512	2992918	1924	70169											
PPP1R2	5504	broad.mit.edu	37	chr3	195250459	195250459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcaaaaattactagcacCatgatgaaagcagtaaagga	8	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195250459	A	A	195250459	1	1	61	0	1	0	0	0	0	0	0	0	12471	609	21	2		2	PPP1R2	3	195250459	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	220947	195250459	2771971	1925	70170											
KIAA0226	9711	broad.mit.edu	37	chr3	197422619	197422619	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgagcttccctttacCgtgaacttatctttactgta	6	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197422619	A	A	197422619	1	1	61	0	1	0	0	0	0	0	0	0	8232	667	23	1		1	KIAA0226	3	197422619	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2172160	197422619	599811	1926	70171											
LRCH3	84859	broad.mit.edu	37	chr3	197547399	197547399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtataagggttacatctAggctgggcgctgtggctcct	13	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197547399	T	T	197547399	1	4	61	0	1	0	0	0	0	0	0	0	9021	435	15	5		5	LRCH3	3	197547399	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	124780	197547399	475031	1927	70172											
LRCH3	84859	broad.mit.edu	37	chr3	197557625	197557625	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaactttgcagtaacagAgtctcttttcggcagccatg	8	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197557625	T	T	197557625	1	4	61	0	1	0	0	0	0	0	0	0	9021	319	11	5		5	LRCH3	3	197557625	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10226	197557625	464805	1928	70173											
ZNF595	152687	broad.mit.edu	37	chr4	54574	54574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttctgccaaaaacacacGcagtgcccagaagtctcctg	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54574	T	T	54574	1	4	61	0	1	0	0	0	0	0	0	0	18152	1102	38	3		3	ZNF595	4	54574	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08		54574	191099702	1929	70174											
ZNF718	255403	broad.mit.edu	37	chr4	106353	106353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagactatcagtctctTcaacttgtgggttagagatc	8	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106353	A	A	106353	1	1	61	0	1	0	0	0	0	0	0	0	18248	1798	62	5		5	ZNF718	4	106353	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	51779	106353	191047923	1930	70175											
PDE6B	5158	broad.mit.edu	37	chr4	619536	619536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctgcgaggacgggtgcCcgccggactgcgacagcctc	16	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	619536	A	A	619536	3	1	61	1	0	0	0	0	1	0	0	0	11740	623	22	2	123	2	PDE6B	4	619536	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	513183	619536	190534740	1931	70176											
PDE6B	5158	broad.mit.edu	37	chr4	628458	628458	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttagcctctttcctctctTgcggcagtgccctcacttca	6	16	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	628458	A	A	628458	1	1	61	0	1	0	0	0	0	0	0	0	11740	1827	63	5		5	PDE6B	4	628458	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	8922	628458	190525818	1932	70177											
PDE6B	5158	broad.mit.edu	37	chr4	629765	629765	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcgccgcggccaggtacccAcacgctgagcacagctctgc	12	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	629765	T	T	629765	1	4	61	0	1	0	0	0	0	0	0	0	11740	174	6	5		5	PDE6B	4	629765	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1307	629765	190524511	1933	70178											
GAK	2580	broad.mit.edu	37	chr4	898359	898359	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtccctgtggatgatgggCggctcctaaccgagtgggac	16	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	898359	G	G	898359	1	3	61	0	1	0	0	0	0	0	0	0	6257	783	27	4		4	GAK	4	898359	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	268594	898359	190255917	1934	70179											
SPON2	10417	broad.mit.edu	37	chr4	1165197	1165197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcccaggcctcgccgcGctccgcaaagtcgcgcagcc	12	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1165197	T	T	1165197	3	4	61	1	0	0	0	0	1	0	0	0	15201	1087	38	3	713	3	SPON2	4	1165197	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	266838	1165197	189989079	1935	70180											
WHSC1	7468	broad.mit.edu	37	chr4	1953784	1953784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcccttgtggtaagagGtgcagaagggactgccgggc	17	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1953784	T	T	1953784	1	4	61	0	1	0	0	0	0	0	0	0	17489	1276	44	3		3	WHSC1	4	1953784	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	788587	1953784	189200492	1936	70181											
SH3BP2	6452	broad.mit.edu	37	chr4	2822418	2822418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctgctaaccatgcctgGgggcgtggccaaggctggct	15	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2822418	T	T	2822418	3	4	61	1	0	0	0	0	1	0	0	0	14358	1232	43	2	335	2	SH3BP2	4	2822418	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	868634	2822418	188331858	1937	70182											
GRK4	2868	broad.mit.edu	37	chr4	3029698	3029698	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccagaaggacagagggttCgaggaagagttggaacagtc	15	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3029698	T	T	3029698	4	4	61	1	0	0	0	0	0	1	0	0	6857	876	31	4	1072	4	GRK4	4	3029698	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	207280	3029698	188124578	1938	70183											
HTT	3064	broad.mit.edu	37	chr4	3142400	3142400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtatgctgacccagtgGcatcttcacattgtcgggaa	11	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3142400	T	T	3142400	1	4	61	0	1	0	0	0	0	0	0	0	7527	1218	42	3		3	HTT	4	3142400	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	112702	3142400	188011876	1939	70184											
HTT	3064	broad.mit.edu	37	chr4	3174833	3174833	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaggaacatggtgcagGcggagcaggagaacgacacc	16	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3174833	A	A	3174833	3	1	61	1	0	0	0	0	1	0	0	0	7527	1203	42	4	4263	4	HTT	4	3174833	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32433	3174833	187979443	1940	70185											
HTT	3064	broad.mit.edu	37	chr4	3182195	3182195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagagcagttttccaaatGtaatttccatgaaatgcctg	8	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3182195	T	T	3182195	1	4	61	0	1	0	0	0	0	0	0	0	7527	1392	48	3		3	HTT	4	3182195	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7362	3182195	187972081	1941	70186											
ADRA2C	152	broad.mit.edu	37	chr4	3768794	3768794	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaccgctactggtcggtgaCgcaggccgtcgagtacaacc	14	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3768794	T	T	3768794	3	4	61	1	0	0	0	0	1	0	0	0	339	536	19	4	463	4	ADRA2C	4	3768794	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	586599	3768794	187385482	1942	70187											
OTOP1	133060	broad.mit.edu	37	chr4	4190628	4190628	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccacaattatccagggttCaaagccaaagacaatctcct	6	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4190628	A	A	4190628	4	1	61	1	0	0	0	0	0	1	0	0	11399	835	29	3	101	3	OTOP1	4	4190628	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	421834	4190628	186963648	1943	70188											
MSX1	4487	broad.mit.edu	37	chr4	4864782	4864782	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcctcgctctacggtgcctCtggccccttccagcgcgccg	11	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4864782	A	A	4864782	3	1	61	1	0	0	0	0	1	0	0	0	9989	913	32	3	830	3	MSX1	4	4864782	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	674154	4864782	186289494	1944	70189											
STK32B	55351	broad.mit.edu	37	chr4	5125675	5125675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcacttagtatgtgtgggGctctgatcaaagcctgttag	12	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5125675	T	T	5125675	1	4	61	0	1	0	0	0	0	0	0	0	15416	1218	42	3		3	STK32B	4	5125675	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	260893	5125675	186028601	1945	70190											
STK32B	55351	broad.mit.edu	37	chr4	5418572	5418572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctgtttctgtatttgcagGacatgttcacattacagact	7	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5418572	T	T	5418572	3	4	61	1	0	0	0	0	1	0	0	0	15416	1188	41	3	495	3	STK32B	4	5418572	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	292897	5418572	185735704	1946	70191											
EVC2	132884	broad.mit.edu	37	chr4	5664989	5664989	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaccttcaggagaattgcGgaaataataattgattgggc	10	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5664989	A	A	5664989	1	1	61	0	1	0	0	0	0	0	0	0	5328	1131	39	4		4	EVC2	4	5664989	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	246417	5664989	185489287	1947	70192											
EVC	2121	broad.mit.edu	37	chr4	5812716	5812716	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagaaagtgaagctggGgacagtgggaactcaaagaa	14	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5812716	T	T	5812716	2	4	61	1	0	0	0	0	0	0	0	1	5327	1219	43	2		2	EVC	4	5812716	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	147727	5812716	185341560	1948	70193											
CRMP1	1400	broad.mit.edu	37	chr4	5859836	5859836	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctcagggcacagagagtcCctccctccttccttaaactc	6	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5859836	G	G	5859836	1	3	61	0	1	0	0	0	0	0	0	0	3922	638	22	4		4	CRMP1	4	5859836	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47120	5859836	185294440	1949	70194											
SORCS2	57537	broad.mit.edu	37	chr4	7524328	7524328	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgctgtcgtcctactcctcTcctgcctcttccccttcccc	5	22	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7524328	C	C	7524328	1	2	61	0	1	0	0	0	0	0	0	0	15045	1566	54	5		5	SORCS2	4	7524328	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1664492	7524328	183629948	1950	70195											
ACOX3	8310	broad.mit.edu	37	chr4	8372793	8372793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaaagcataacagcccCgtgtgtggttgccaggaccc	11	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8372793	T	T	8372793	1	4	61	0	1	0	0	0	0	0	0	0	160	667	23	4		4	ACOX3	4	8372793	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	848465	8372793	182781483	1951	70196											
C4orf23	152992	broad.mit.edu	37	chr4	8472625	8472625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccaccttagctgggtgGggacgccacggccctcacgg	15	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8472625	T	T	8472625	1	4	61	0	1	0	0	0	0	0	0	0	2279	1247	43	2		2	C4orf23	4	8472625	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	99832	8472625	182681651	1952	70197											
C1QTNF7	114905	broad.mit.edu	37	chr4	15444437	15444437	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgtgatcaggaccaagatCcctgtggtaaacactctgat	9	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15444437	A	A	15444437	1	1	61	0	1	0	0	0	0	0	0	0	1988	870	30	3		3	C1QTNF7	4	15444437	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6971812	15444437	175709839	1953	70198											
LDB2	9079	broad.mit.edu	37	chr4	16513180	16513180	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcctttccttcttccTtatcttccctttcttccttc	0	16	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16513180	C	C	16513180	1	2	61	0	1	0	0	0	0	0	0	0	8768	1624	56	5		5	LDB2	4	16513180	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1068743	16513180	174641096	1954	70199											
LDB2	9079	broad.mit.edu	37	chr4	16531215	16531215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatcagagattgaagcttGtttttatttttcctccacct	8	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16531215	T	T	16531215	1	4	61	0	1	0	0	0	0	0	0	0	8768	1392	48	3		3	LDB2	4	16531215	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18035	16531215	174623061	1955	70200											
LDB2	9079	broad.mit.edu	37	chr4	16766930	16766930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccaagggacctccagcaGctcacgtgtcagggttaagg	14	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16766930	T	T	16766930	1	4	61	0	1	0	0	0	0	0	0	0	8768	986	34	3		3	LDB2	4	16766930	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	235715	16766930	174387346	1956	70201											
QDPR	5860	broad.mit.edu	37	chr4	17510984	17510984	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacatcaacgctggcaacCcactggaaggagaaaacagc	9	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17510984	G	G	17510984	3	3	61	1	0	0	0	0	1	0	0	0	12980	624	22	4	650	4	QDPR	4	17510984	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	744054	17510984	173643292	1957	70202											
SLIT2	9353	broad.mit.edu	37	chr4	20255564	20255564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcacagtggactgtcaCgggctggcgctgcgcagcgt	17	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20255564	A	A	20255564	3	1	61	1	0	0	0	0	1	0	0	0	14854	535	19	3	128	3	SLIT2	4	20255564	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2744580	20255564	170898712	1958	70203											
SLIT2	9353	broad.mit.edu	37	chr4	20469422	20469422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcccaaggaaagctttccGtggggcagttgacataaaaa	10	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20469422	T	T	20469422	3	4	61	1	0	0	0	0	1	0	0	0	14854	1145	40	3	461	3	SLIT2	4	20469422	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	213858	20469422	170684854	1959	70204											
SLIT2	9353	broad.mit.edu	37	chr4	20525544	20525544	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtatgtataagtgatttGgatcacttttgatgacattg	9	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20525544	T	T	20525544	1	4	61	0	1	0	0	0	0	0	0	0	14854	1363	47	2		2	SLIT2	4	20525544	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	56122	20525544	170628732	1960	70205											
SLIT2	9353	broad.mit.edu	37	chr4	20543082	20543082	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgtggctcttagaaacctCttggccaatccttttaactg	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20543082	T	T	20543082	2	4	61	1	0	0	0	0	0	0	0	1	14854	900	32	4		4	SLIT2	4	20543082	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17538	20543082	170611194	1961	70206											
SLIT2	9353	broad.mit.edu	37	chr4	20611664	20611664	+	Missense_Mutation	SNP	C	A	A													caatcaatgatggaaacttcCacattgtggaactacttgcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20611664	A	A	20611664	3	1	61	1	0	0	0	0	1	0	0	0	14854	594	21	2	3855	2	SLIT2	4	20611664	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	68582	20611664	170542612	1962	70207	322	3									
SLIT2	9353	broad.mit.edu	37	chr4	20611666	20611666	+	Missense_Mutation	SNP	C	A	A													atcaatgatggaaacttccaCattgtggaactacttgcctt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20611666	A	A	20611666	3	1	61	1	0	0	0	0	1	0	0	0	14854	477	17	3	3857	3	SLIT2	4	20611666	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2	20611666	170542610	1963	70208	322	3									
SLIT2	9353	broad.mit.edu	37	chr4	20611668	20611668	+	Missense_Mutation	SNP	T	A	A													caatgatggaaacttccacaTtgtggaactacttgccttgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20611668	A	A	20611668	3	1	61	1	0	0	0	0	1	0	0	0	14854	1493	52	5	3859	5	SLIT2	4	20611668	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2	20611668	170542608	1964	70209	322	3									
SLIT2	9353	broad.mit.edu	37	chr4	20611815	20611815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcttccaaattcaggtGgtcctgaaaccctgtgattc	9	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20611815	T	T	20611815	1	4	61	0	1	0	0	0	0	0	0	0	14854	1363	47	2		2	SLIT2	4	20611815	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	147	20611815	170542461	1965	70210											
KCNIP4	80333	broad.mit.edu	37	chr4	20851977	20851977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgggcaatcacagtatGccagcatgggtgtgccacag	12	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20851977	T	T	20851977	1	4	61	0	1	0	0	0	0	0	0	0	8112	1334	46	3		3	KCNIP4	4	20851977	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	240162	20851977	170302299	1966	70211											
KCNIP4	80333	broad.mit.edu	37	chr4	21008455	21008455	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagttgtattgtcatggcgGacctaacttggggtgcagaa	14	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21008455	C	C	21008455	1	2	61	0	1	0	0	0	0	0	0	0	8112	1189	41	4		4	KCNIP4	4	21008455	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	156478	21008455	170145821	1967	70212											
KCNIP4	80333	broad.mit.edu	37	chr4	21178412	21178412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcggcctcccaaagtgctGggattacaggcatgggccac	12	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21178412	T	T	21178412	1	4	61	0	1	0	0	0	0	0	0	0	8112	1363	47	2		2	KCNIP4	4	21178412	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	169957	21178412	169975864	1968	70213											
KCNIP4	80333	broad.mit.edu	37	chr4	21936299	21936299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagctcagctcagagtacCacgtgccaccctccactctt	6	17	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21936299	A	A	21936299	1	1	61	0	1	0	0	0	0	0	0	0	8112	609	21	2		2	KCNIP4	4	21936299	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	757887	21936299	169217977	1969	70214											
GBA3	57733	broad.mit.edu	37	chr4	22699054	22699055	+	Intron	DEL	TG	-	-													attcttgtagttaagacattTgtgtgtgtgtgtgtgtgtgt					rs73108302	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22699055	-	-	22699054	6	5	61	0	1	1	0	1	0	0	0	0	6330	1827	63	0		0	GBA3	4	22699054	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	762755	22699054	168455222	1970	70215											
GBA3	57733	broad.mit.edu	37	chr4	22729009	22729009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagatgttcatagcagcaCacacctgcggctctttttcg	10	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22729009	A	A	22729009	1	1	61	0	1	0	0	0	0	0	0	0	6330	493	17	3		3	GBA3	4	22729009	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	29955	22729009	168425267	1971	70216											
PPARGC1A	10891	broad.mit.edu	37	chr4	23803939	23803939	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgttgtgtcaggtctgatTttaccgacataaatcacacg	9	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23803939	A	A	23803939	3	1	61	1	0	0	0	0	1	0	0	0	12396	1838	64	5	359	5	PPARGC1A	4	23803939	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1074930	23803939	167350337	1972	70217											
PPARGC1A	10891	broad.mit.edu	37	chr4	23815429	23815429	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcatcctttggggtctttgAgaaaataaggatttgggtgg	14	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23815429	G	G	23815429	2	3	61	1	0	0	0	0	0	0	0	1	12396	291	11	5		5	PPARGC1A	4	23815429	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11490	23815429	167338847	1973	70218											
LGI2	55203	broad.mit.edu	37	chr4	25014122	25014122	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtctgatgaacaacaaaatCtggggatgggtgtttaaaaa	11	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25014122	A	A	25014122	5	1	61	1	0	0	0	0	0	0	1	0	8824	927	32	3	990	3	LGI2	4	25014122	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1198693	25014122	166140154	1974	70219											
SEPSECS	51091	broad.mit.edu	37	chr4	25160709	25160709	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtgtactttcatcccaGccattctctggacacttgcc	6	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25160709	A	A	25160709	2	1	61	1	0	0	0	0	0	0	0	1	14171	958	34	4		4	SEPSECS	4	25160709	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	146587	25160709	165993567	1975	70220											
SEL1L3	23231	broad.mit.edu	37	chr4	25827592	25827592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataagccaccacgcccggCcggcctggtctaaattctga	10	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25827592	A	A	25827592	1	1	61	0	1	0	0	0	0	0	0	0	14125	754	26	3		3	SEL1L3	4	25827592	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	666883	25827592	165326684	1976	70221											
SEL1L3	23231	broad.mit.edu	37	chr4	25849101	25849101	+	Frame_Shift_Del	DEL	C	-	-													atttaacattccagtctctgCcactgtatttgtgagtaatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25849101	-	-	25849101	7	5	61	1	0	1	0	1	0	0	0	0	14125	739	26	0	2942	0	SEL1L3	4	25849101	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	21509	25849101	165305175	1977	70222											
STIM2	57620	broad.mit.edu	37	chr4	27019446	27019446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcagcttgctccacacGccccccacccgtcacaccct	6	22	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27019446	T	T	27019446	3	4	61	1	0	0	0	0	1	0	0	0	15402	1087	38	3	1673	3	STIM2	4	27019446	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1170345	27019446	164134830	1978	70223											
ARAP2	116984	broad.mit.edu	37	chr4	35978531	35978531	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctccccagacctgtggacCtgtgagtcaaacctctttcc	8	16	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35978531	T	T	35978531	1	4	61	0	1	0	0	0	0	0	0	0	841	696	24	4		4	ARAP2	4	35978531	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8959085	35978531	155175745	1979	70224											
ARAP2	116984	broad.mit.edu	37	chr4	36150175	36150175	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actaccagttatatttagctCttaagaaaatgaataacaca	4	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36150175	T	T	36150175	1	4	61	0	1	0	0	0	0	0	0	0	841	928	32	4		4	ARAP2	4	36150175	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	171644	36150175	155004101	1980	70225											
ARAP2	116984	broad.mit.edu	37	chr4	36163086	36163086	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggttaaataggactcaCctcgatgagttcattgctcc	8	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36163086	A	A	36163086	5	1	61	1	0	0	0	0	0	0	1	0	841	521	18	3	2942	3	ARAP2	4	36163086	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12911	36163086	154991190	1981	70226											
RFC1	5981	broad.mit.edu	37	chr4	39310098	39310098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgttttgttcacaacacCaccagcagggtctagtactg	9	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39310098	A	A	39310098	1	1	61	0	1	0	0	0	0	0	0	0	13352	609	21	2		2	RFC1	4	39310098	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3147012	39310098	151844178	1982	70227											
UGDH	7358	broad.mit.edu	37	chr4	39505482	39505482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaaaaacaatccaGgatcatgattacctggaagc	7	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39505482	T	T	39505482	1	4	61	0	1	0	0	0	0	0	0	0	17066	1015	35	2		2	UGDH	4	39505482	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	195384	39505482	151648794	1983	70228											
PDS5A	23244	broad.mit.edu	37	chr4	39851087	39851087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaccaagtgggaCaatatatttttctattacat	4	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39851087	A	A	39851087	1	1	61	0	1	0	0	0	0	0	0	0	11785	493	17	3		3	PDS5A	4	39851087	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	345605	39851087	151303189	1984	70229											
N4BP2	55728	broad.mit.edu	37	chr4	40146365	40146365	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttttagacctccatgggctGcatgtggatgaagctctaga	12	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40146365	C	C	40146365	2	2	61	1	0	0	0	0	0	0	0	1	10204	1306	46	4		4	N4BP2	4	40146365	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	295278	40146365	151007911	1985	70230											
RBM47	54502	broad.mit.edu	37	chr4	40438622	40438622	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacccctaggccctggggctCtgttgccagctgcacctcgc	11	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40438622	T	T	40438622	3	4	61	1	0	0	0	0	1	0	0	0	13249	913	32	4	627	4	RBM47	4	40438622	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	292257	40438622	150715654	1986	70231											
NSUN7	79730	broad.mit.edu	37	chr4	40810295	40810295	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaataatagctaactcccAcatttagtaaatgcttcttt	3	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40810295	T	T	40810295	1	4	61	0	1	0	0	0	0	0	0	0	10778	174	6	5		5	NSUN7	4	40810295	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	371673	40810295	150343981	1987	70232											
PHOX2B	8929	broad.mit.edu	37	chr4	41749393	41749393	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcgcctctgtgaggtcgatCttcagggccagctcctcccg	12	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41749393	G	G	41749393	3	3	61	1	0	0	0	0	1	0	0	0	11954	912	32	4	550	4	PHOX2B	4	41749393	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	939098	41749393	149404883	1988	70233											
ATP8A1	10396	broad.mit.edu	37	chr4	42580345	42580345	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caataagctgataggaatgaGattgttgaaaaggatgatga	12	2	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42580345	A	A	42580345	3	1	61	1	0	0	0	0	1	0	0	0	1196	942	33	4	2538	4	ATP8A1	4	42580345	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	830952	42580345	148573931	1989	70234											
KCTD8	386617	broad.mit.edu	37	chr4	44177184	44177184	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcattacaggaagtccCactttcacttcctttatcag	6	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44177184	A	A	44177184	3	1	61	1	0	0	0	0	1	0	0	0	8185	594	21	2	380	2	KCTD8	4	44177184	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1596839	44177184	146977092	1990	70235											
YIPF7	285525	broad.mit.edu	37	chr4	44626581	44626581	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaaccttggctatgattGtgcatgtggggtcattgaga	14	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44626581	A	A	44626581	1	1	61	0	1	0	0	0	0	0	0	0	17610	1392	48	4		4	YIPF7	4	44626581	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	449397	44626581	146527695	1991	70236											
GABRG1	2565	broad.mit.edu	37	chr4	46043136	46043136	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccctccaagatcctgttcTgcagtcttcaaagcaacaga	6	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46043136	C	C	46043136	3	2	61	1	0	0	0	0	1	0	0	0	6231	1588	55	5	134	5	GABRG1	4	46043136	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1416555	46043136	145111140	1992	70237											
GABRG1	2565	broad.mit.edu	37	chr4	46043281	46043281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagtcatctgagcacaAtaataaatgaatttttgaca	7	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46043281	T	T	46043281	1	4	61	0	1	0	0	0	0	0	0	0	6231	116	4	5		5	GABRG1	4	46043281	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	145	46043281	145110995	1993	70238											
GABRG1	2565	broad.mit.edu	37	chr4	46066476	46066476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagcttgaaaattccagtgGacaggaatgttcatccatgg	10	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066476	T	T	46066476	3	4	61	1	0	0	0	0	1	0	0	0	6231	1174	41	3	810	3	GABRG1	4	46066476	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23195	46066476	145087800	1994	70239											
GABRB1	2560	broad.mit.edu	37	chr4	47163106	47163106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatgatccacagtgccaGgcccctagtacttttaacct	7	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47163106	T	T	47163106	1	4	61	0	1	0	0	0	0	0	0	0	6226	1015	35	2		2	GABRB1	4	47163106	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1096630	47163106	143991170	1995	70240											
GABRB1	2560	broad.mit.edu	37	chr4	47405654	47405654	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgcaaacctacatgccttCtacactgattacaattctgt	4	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47405654	A	A	47405654	3	1	61	1	0	0	0	0	1	0	0	0	6226	913	32	3	787	3	GABRB1	4	47405654	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	242548	47405654	143748622	1996	70241											
ATP10D	57205	broad.mit.edu	37	chr4	47537490	47537490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatatccccacttttgctGtttaaaagtgaatttatatg	5	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47537490	T	T	47537490	1	4	61	0	1	0	0	0	0	0	0	0	1122	1392	48	3		3	ATP10D	4	47537490	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	131836	47537490	143616786	1997	70242											
ATP10D	57205	broad.mit.edu	37	chr4	47563059	47563059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaattactacttgaatctGccatgaggttggagaacaaa	9	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47563059	T	T	47563059	3	4	61	1	0	0	0	0	1	0	0	0	1122	1319	46	3	2685	3	ATP10D	4	47563059	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25569	47563059	143591217	1998	70243											
ATP10D	57205	broad.mit.edu	37	chr4	47574026	47574026	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatgccacttcatttctgTttcacttacttccaggaaac	7	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47574026	C	C	47574026	1	2	61	0	1	0	0	0	0	0	0	0	1122	1740	60	5		5	ATP10D	4	47574026	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10967	47574026	143580250	1999	70244											
CORIN	10699	broad.mit.edu	37	chr4	47605192	47605192	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagttctcacgaggtctgatGgttttataaggggcttttcc	12	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47605192	C	C	47605192	1	2	61	0	1	0	0	0	0	0	0	0	3784	1363	47	4		4	CORIN	4	47605192	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31166	47605192	143549084	2000	70245											
CORIN	10699	broad.mit.edu	37	chr4	47667172	47667172	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggaaaagagaagactccCagctgatggatgcttccttt	11	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47667172	T	T	47667172	4	4	61	1	0	0	0	0	0	1	0	0	3784	595	21	4	1710	4	CORIN	4	47667172	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61980	47667172	143487104	2001	70246											
CORIN	10699	broad.mit.edu	37	chr4	47788873	47788873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaagaataacatcggacCcttggatttcaccatcagtg	8	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47788873	A	A	47788873	3	1	61	1	0	0	0	0	1	0	0	0	3784	623	22	2	2930	2	CORIN	4	47788873	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	121701	47788873	143365403	2002	70247											
CNGA1	1259	broad.mit.edu	37	chr4	47942862	47942862	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccaatattctaggtaatcAgattgaagttcatcaaaaca	6	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47942862	T	T	47942862	2	4	61	1	0	0	0	0	0	0	0	1	3628	175	7	5		5	CNGA1	4	47942862	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	153989	47942862	143211414	2003	70248											
TEC	7006	broad.mit.edu	37	chr4	48173303	48173303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattacaaatgcaatagataCattagctgtatttctgtctt	6	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48173303	A	A	48173303	1	1	61	0	1	0	0	0	0	0	0	0	15864	493	17	3		3	TEC	4	48173303	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	230441	48173303	142980973	2004	70249											
FRYL	285527	broad.mit.edu	37	chr4	48569380	48569380	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgtctagttaaatctacAtattccaataaagtgttgtt	6	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48569380	G	G	48569380	2	3	61	1	0	0	0	0	0	0	0	1	6124	224	8	5		5	FRYL	4	48569380	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	396077	48569380	142584896	2005	70250											
CWH43	80157	broad.mit.edu	37	chr4	48994268	48994268	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattggtgcagccagtgggcTatttgctaagcaggaggcac	14	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48994268	A	A	48994268	1	1	61	0	1	0	0	0	0	0	0	0	4106	1537	53	5		5	CWH43	4	48994268	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	424888	48994268	142160008	2006	70251											
DCUN1D4	23142	broad.mit.edu	37	chr4	52740376	52740376	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattagcagtactgttctttGgaagtacagagttaggatgt	11	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52740376	T	T	52740376	1	4	61	0	1	0	0	0	0	0	0	0	4349	1363	47	2		2	DCUN1D4	4	52740376	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3746108	52740376	138413900	2007	70252											
DCUN1D4	23142	broad.mit.edu	37	chr4	52757001	52757001	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtatttattaaaactcAccatcagttccctgtgctat	5	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52757001	T	T	52757001	1	4	61	0	1	0	0	0	0	0	0	0	4349	174	6	5		5	DCUN1D4	4	52757001	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	16625	52757001	138397275	2008	70253											
LRRC66	339977	broad.mit.edu	37	chr4	52861921	52861921	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgtcatcgtagaagccctCgtttgaatacgcgttgtcca	9	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52861921	A	A	52861921	4	1	61	1	0	0	0	0	0	1	0	0	9105	893	31	3	1379	3	LRRC66	4	52861921	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104920	52861921	138292355	2009	70254											
SPATA18	132671	broad.mit.edu	37	chr4	52943349	52943349	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctccccatctgtctccttCcttctctttcttcctccttc	2	19	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52943349	T	T	52943349	1	4	61	0	1	0	0	0	0	0	0	0	15119	870	30	4		4	SPATA18	4	52943349	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	81428	52943349	138210927	2010	70255											
SPATA18	132671	broad.mit.edu	37	chr4	52960588	52960588	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catagtgctaaagtgcctcaGagaaagctatttggttggtt	11	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52960588	A	A	52960588	1	1	61	0	1	0	0	0	0	0	0	0	15119	957	33	4		4	SPATA18	4	52960588	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17239	52960588	138193688	2011	70256											
SPATA18	132671	broad.mit.edu	37	chr4	52961149	52961149	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcctcagacctcacttaAgataatgtcaaaaggcaatt	6	10	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52961149	C	C	52961149	1	2	61	0	1	0	0	0	0	0	0	0	15119	87	3	5		5	SPATA18	4	52961149	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	561	52961149	138193127	2012	70257											
USP46	64854	broad.mit.edu	37	chr4	53500468	53500468	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcagattgcctaaggtcagGagtttgagcccagcctggcc	14	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53500468	C	C	53500468	1	2	61	0	1	0	0	0	0	0	0	0	17204	1189	41	4		4	USP46	4	53500468	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	539319	53500468	137653808	2013	70258											
SCFD2	152579	broad.mit.edu	37	chr4	53972264	53972264	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagggtctggagtggacctGcaaacactagcagacctgca	12	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53972264	C	C	53972264	1	2	61	0	1	0	0	0	0	0	0	0	14002	1334	46	4		4	SCFD2	4	53972264	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	471796	53972264	137182012	2014	70259											
LNX1	84708	broad.mit.edu	37	chr4	54362242	54362242	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catatcgaagatcatgtccaTtgatggctaacacacggtca	8	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54362242	C	C	54362242	3	2	61	1	0	0	0	0	1	0	0	0	8939	1493	52	5	912	5	LNX1	4	54362242	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	389978	54362242	136792034	2015	70260											
PDGFRA	5156	broad.mit.edu	37	chr4	54530059	54530059	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgtgcccatcaacccAtcatctacattaggttattt	5	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54530059	G	G	54530059	1	3	61	0	1	0	0	0	0	0	0	0	11755	232	8	5		5	PDGFRA	4	54530059	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	167817	54530059	136624217	2016	70261											
PDGFRA	5156	broad.mit.edu	37	chr4	54655047	54655047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccaagcttcataattgcGggaccacatggctatgctgt	9	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54655047	T	T	54655047	1	4	61	0	1	0	0	0	0	0	0	0	11755	1131	39	1		1	PDGFRA	4	54655047	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	124988	54655047	136499229	2017	70262											
KDR	3791	broad.mit.edu	37	chr4	55958976	55958976	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataatctttttaagacttggGagttaagtttttaggaaata	8	2	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55958976	T	T	55958976	1	4	61	0	1	0	0	0	0	0	0	0	8209	1189	41	3		3	KDR	4	55958976	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1303929	55958976	135195300	2018	70263											
KDR	3791	broad.mit.edu	37	chr4	55963918	55963918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttggccaaaggcaccaCggccaagaggcttacctaga	10	13	1	2	rs149901681		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55963918	A	A	55963918	3	1	61	1	0	0	0	0	1	0	0	0	8209	536	19	3	1597	3	KDR	4	55963918	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4942	55963918	135190358	2019	70264											
KDR	3791	broad.mit.edu	37	chr4	55964401	55964401	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agttcatctggatccatgacGatggacaagtagcctgtctt	10	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55964401	T	T	55964401	2	4	61	1	0	0	0	0	0	0	0	1	8209	1048	37	3		3	KDR	4	55964401	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	483	55964401	135189875	2020	70265											
KDR	3791	broad.mit.edu	37	chr4	55971034	55971034	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggattggcagaggctgtGggccaagcttgtaccatgtg	15	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55971034	A	A	55971034	3	1	61	1	0	0	0	0	1	0	0	0	8209	1348	47	4	2379	4	KDR	4	55971034	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6633	55971034	135183242	2021	70266											
KDR	3791	broad.mit.edu	37	chr4	55971177	55971177	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaagaggccatagttattGaatggtgatttaacttggta	11	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55971177	A	A	55971177	1	1	61	0	1	0	0	0	0	0	0	0	8209	1305	45	4		4	KDR	4	55971177	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	143	55971177	135183099	2022	70267											
IGFBP7	3490	broad.mit.edu	37	chr4	57939018	57939018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctccctagagctccccaGgggctacccttacaatgtac	8	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57939018	T	T	57939018	1	4	61	0	1	0	0	0	0	0	0	0	7654	1015	35	2		2	IGFBP7	4	57939018	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1967841	57939018	133215258	2023	70268											
LPHN3	23284	broad.mit.edu	37	chr4	62453099	62453099	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatttgtgactctgacccTgctcagatggagaatatccg	9	9	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62453099	A	A	62453099	2	1	61	1	0	0	0	0	0	0	0	1	9004	1567	55	5		5	LPHN3	4	62453099	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4514081	62453099	128701177	2024	70269											
LPHN3	23284	broad.mit.edu	37	chr4	62542640	62542640	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccttgaagtgcagtatgaAtgtgtcccttacagtatgta	9	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62542640	T	T	62542640	3	4	61	1	0	0	0	0	1	0	0	0	9004	98	4	5	376	5	LPHN3	4	62542640	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	89541	62542640	128611636	2025	70270											
LPHN3	23284	broad.mit.edu	37	chr4	62720406	62720406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttcagtgtgggctgcaCtaacttgctaccaaagaata	8	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62720406	A	A	62720406	1	1	61	0	1	0	0	0	0	0	0	0	9004	580	20	3		3	LPHN3	4	62720406	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	177766	62720406	128433870	2026	70271											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69094994	69094994	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattcatataaagtgttccCcaacctgtaactacaacatt	3	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69094994	T	T	69094994	4	4	61	1	0	0	0	0	0	1	0	0	16363	624	22	4	335	4	TMPRSS11B	4	69094994	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6374588	69094994	122059282	2027	70272											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69101862	69101862	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattaattttaaaaatctctGatttaccttagtctcaatat	2	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69101862	T	T	69101862	1	4	61	0	1	0	0	0	0	0	0	0	16363	1305	45	3		3	TMPRSS11B	4	69101862	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6868	69101862	122052414	2028	70273											
UGT2B11	10720	broad.mit.edu	37	chr4	70073882	70073882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggtagtaactcccccagGgccacatgtaaccactaagt	9	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70073882	T	T	70073882	1	4	61	0	1	0	0	0	0	0	0	0	17083	1247	43	2		2	UGT2B11	4	70073882	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	972020	70073882	121080394	2029	70274											
UGT2B4	7363	broad.mit.edu	37	chr4	70360982	70360982	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtcatttggtcacttagttCtgacataacaacaggcacat	7	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70360982	T	T	70360982	3	4	61	1	0	0	0	0	1	0	0	0	17087	922	32	4	1012	4	UGT2B4	4	70360982	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	287100	70360982	120793294	2030	70275											
SULT1E1	6783	broad.mit.edu	37	chr4	70713550	70713550	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtgtaaaagtggtatcatCtctaaaactgctcgaaaact	7	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70713550	G	G	70713550	1	3	61	0	1	0	0	0	0	0	0	0	15498	928	32	4		4	SULT1E1	4	70713550	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	352568	70713550	120440726	2031	70276											
STATH	6779	broad.mit.edu	37	chr4	70865520	70865520	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgcgtagaattggaagAttcggtgtaagtgttctctg	12	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70865520	G	G	70865520	2	3	61	1	0	0	0	0	0	0	0	1	15389	330	12	5		5	STATH	4	70865520	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	151970	70865520	120288756	2032	70277											
C4orf40	401137	broad.mit.edu	37	chr4	71023590	71023590	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaagttgagaaagataagtCtggaatatgggacacctgga	14	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71023590	A	A	71023590	1	1	61	0	1	0	0	0	0	0	0	0	2292	928	32	3		3	C4orf40	4	71023590	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	158070	71023590	120130686	2033	70278											
C4orf40	401137	broad.mit.edu	37	chr4	71024621	71024621	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccctctcttgaacaggtaGgttgtttatatcttaccact	6	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71024621	C	C	71024621	1	2	61	0	1	0	0	0	0	0	0	0	2292	1015	35	4		4	C4orf40	4	71024621	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1031	71024621	120129655	2034	70279											
SMR3B	10879	broad.mit.edu	37	chr4	71255442	71255442	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaccgctggctcctcctcaAccttttggcccaggatttgt	10	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71255442	C	C	71255442	3	2	61	1	0	0	0	0	1	0	0	0	14926	40	2	5	123	5	SMR3B	4	71255442	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	230821	71255442	119898834	2035	70280											
PROL1	58503	broad.mit.edu	37	chr4	71275470	71275470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctatctctaaccctgagcCccaaataaacatcaccaccg	3	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71275470	T	T	71275470	3	4	61	1	0	0	0	0	1	0	0	0	12660	623	22	4	431	4	PROL1	4	71275470	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20028	71275470	119878806	2036	70281											
SLC4A4	8671	broad.mit.edu	37	chr4	72263426	72263426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacgtatatctaaaagatGctgagaaaggattagaggtg	12	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72263426	T	T	72263426	1	4	61	0	1	0	0	0	0	0	0	0	14770	1334	46	3		3	SLC4A4	4	72263426	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	987956	72263426	118890850	2037	70282											
COX18	285521	broad.mit.edu	37	chr4	73930892	73930893	+	Intron	INS	-	G	G													aattatgaaaagtatgctttINStttttttttttttttttttt					rs79402424		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73930893	G	G	73930892	6	5	61	0	1	1	1	0	0	0	0	0	3799	1856	64	0		0	COX18	4	73930892	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1667466	73930892	117223384	2038	70283											
ANKRD17	26057	broad.mit.edu	37	chr4	74005688	74005688	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatactgcttttttagctgcTgctgagttttcagttgtaac	9	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74005688	G	G	74005688	3	3	61	1	0	0	0	0	1	0	0	0	646	1580	55	5	5246	5	ANKRD17	4	74005688	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	74796	74005688	117148588	2039	70284											
ANKRD17	26057	broad.mit.edu	37	chr4	74014779	74014779	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggccatcctaatgataatAcaatttaaaaaattaaatca	3	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74014779	T	T	74014779	1	4	61	0	1	0	0	0	0	0	0	0	646	406	14	5		5	ANKRD17	4	74014779	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9091	74014779	117139497	2040	70285											
ALB	213	broad.mit.edu	37	chr4	74280832	74280832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagacatatgaaaccaCtctagagaagtgctgtgccg	10	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74280832	A	A	74280832	3	1	61	1	0	0	0	0	1	0	0	0	486	565	20	3	1173	3	ALB	4	74280832	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	266053	74280832	116873444	2041	70286											
AFP	174	broad.mit.edu	37	chr4	74309266	74309266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttagagaatgaagaccCctttgtgacccctttgatga	9	8	0	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74309266	A	A	74309266	1	1	61	0	1	0	0	0	0	0	0	0	363	638	22	2		2	AFP	4	74309266	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28434	74309266	116845010	2042	70287											
AFP	174	broad.mit.edu	37	chr4	74315230	74315230	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtatgaaaaactggattgaTatcatctgttaaaaatgctg	8	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74315230	C	C	74315230	1	2	61	0	1	0	0	0	0	0	0	0	363	1421	49	5		5	AFP	4	74315230	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5964	74315230	116839046	2043	70288											
AFM	173	broad.mit.edu	37	chr4	74361153	74361153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttaccgttacgcggtaGgttccattgttgtaggttca	12	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74361153	T	T	74361153	1	4	61	0	1	0	0	0	0	0	0	0	361	1015	35	2		2	AFM	4	74361153	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45923	74361153	116793123	2044	70289											
CXCL3	2921	broad.mit.edu	37	chr4	74902951	74902951	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggaagtgtcaatgataCgctgataagcttcttacttc	9	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74902951	A	A	74902951	1	1	61	0	1	0	0	0	0	0	0	0	4119	551	19	3		3	CXCL3	4	74902951	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	541798	74902951	116251325	2045	70290											
PARM1	25849	broad.mit.edu	37	chr4	75937503	75937503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagttgccttcacaactgGggagggcacaatgcaaaatg	11	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75937503	T	T	75937503	1	4	61	0	1	0	0	0	0	0	0	0	11546	1247	43	2		2	PARM1	4	75937503	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1034552	75937503	115216773	2046	70291											
USO1	8615	broad.mit.edu	37	chr4	76703978	76703978	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaattctggctggtctgcAcagaaagtgaccaatctaca	9	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76703978	G	G	76703978	2	3	61	1	0	0	0	0	0	0	0	1	17165	146	6	5		5	USO1	4	76703978	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	766475	76703978	114450298	2047	70292											
CCDC158	339965	broad.mit.edu	37	chr4	77290615	77290615	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgacactcgctcttcaaGgccttgagcagggcttccag	10	15	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77290615	T	T	77290615	2	4	61	1	0	0	0	0	0	0	0	1	2817	987	35	2		2	CCDC158	4	77290615	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	586637	77290615	113863661	2048	70293											
SHROOM3	57619	broad.mit.edu	37	chr4	77660382	77660382	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatggtctaatattcctcgGggcaagggagtgccaccccc	11	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77660382	C	C	77660382	2	2	61	1	0	0	0	0	0	0	0	1	14408	1219	43	4		4	SHROOM3	4	77660382	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	369767	77660382	113493894	2049	70294											
SEPT11	55752	broad.mit.edu	37	chr4	77952117	77952117	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccaagaaagacaaggataAgaaaaagtaagcaggtgtca	10	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77952117	C	C	77952117	3	2	61	1	0	0	0	0	1	0	0	0	14174	72	3	5	1302	5	SEPT11	4	77952117	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	291735	77952117	113202159	2050	70295											
FRAS1	80144	broad.mit.edu	37	chr4	79265727	79265728	+	Intron	DNP	GG	TT	TT													caattgcttgcacacaatcgGggctcaagaatgattttttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	79265728	TT	TT	79265727	1	4	61	0	1	0	0	0	0	0	0	0	6102	1247	43	2		2	FRAS1	4	79265727	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	1313610	79265727	111888549	2051	70296											
FRAS1	80144	broad.mit.edu	37	chr4	79284775	79284775	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcggggaccactgtgttcCtgactgcccttcaggatact	11	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79284775	T	T	79284775	3	4	61	1	0	0	0	0	1	0	0	0	6102	681	24	4	2613	4	FRAS1	4	79284775	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19048	79284775	111869501	2052	70297											
FRAS1	80144	broad.mit.edu	37	chr4	79308821	79308821	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatgatggacactccttccAtaatatactgttccaagtga	6	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79308821	G	G	79308821	3	3	61	1	0	0	0	0	1	0	0	0	6102	217	8	5	4055	5	FRAS1	4	79308821	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	24046	79308821	111845455	2053	70298											
PAQR3	152559	broad.mit.edu	37	chr4	79856274	79856274	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtatttgtgaaatgacttaCctggaagcagaaaagacaaa	9	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79856274	T	T	79856274	5	4	61	1	0	0	0	0	0	0	1	0	11530	521	18	4	606	4	PAQR3	4	79856274	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	547453	79856274	111298002	2054	70299											
C4orf22	255119	broad.mit.edu	37	chr4	81307588	81307588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctcctccagccccagcgGgtcaggcaagggggtcacca	12	16	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81307588	T	T	81307588	1	4	61	0	1	0	0	0	0	0	0	0	2278	1247	43	2		2	C4orf22	4	81307588	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1451314	81307588	109846688	2055	70300											
C4orf22	255119	broad.mit.edu	37	chr4	81308393	81308393	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgggggtaagtccttgttgCagaagtggccggggtagctc	17	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81308393	T	T	81308393	1	4	61	0	1	0	0	0	0	0	0	0	2278	725	25	4		4	C4orf22	4	81308393	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	805	81308393	109845883	2056	70301											
C4orf22	255119	broad.mit.edu	37	chr4	81780681	81780681	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggtctttacattttggcAtgattttgcagcagctggta	11	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81780681	G	G	81780681	1	3	61	0	1	0	0	0	0	0	0	0	2278	232	8	5		5	C4orf22	4	81780681	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	472288	81780681	109373595	2057	70302											
SCD5	79966	broad.mit.edu	37	chr4	83552387	83552387	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccttccccaccctctgcCccctcccacgatccaatgta	4	21	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83552387	A	A	83552387	1	1	61	0	1	0	0	0	0	0	0	0	13999	638	22	2		2	SCD5	4	83552387	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1771706	83552387	107601889	2058	70303											
COQ2	27235	broad.mit.edu	37	chr4	84200090	84200090	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctctctattccttttcagGatgaaattacctttttatca	4	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84200090	T	T	84200090	1	4	61	0	1	0	0	0	0	0	0	0	3777	1189	41	3		3	COQ2	4	84200090	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	647703	84200090	106954186	2059	70304											
AGPAT9	84803	broad.mit.edu	37	chr4	84457904	84457904	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctacatgaagatcctagtGaaaactttagaggtgagtgc	10	6	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84457904	C	C	84457904	2	2	61	1	0	0	0	0	0	0	0	1	392	1277	45	4		4	AGPAT9	4	84457904	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	257814	84457904	106696372	2060	70305											
SPARCL1	8404	broad.mit.edu	37	chr4	88415261	88415261	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgtcttcctcctgcttgcTgttagcatgctccctgggca	9	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88415261	G	G	88415261	3	3	61	1	0	0	0	0	1	0	0	0	15112	1580	55	5	1335	5	SPARCL1	4	88415261	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3957357	88415261	102739015	2061	70306											
DSPP	1834	broad.mit.edu	37	chr4	88534363	88534363	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggcagccaaagaatagAggacacccagaagctcaacc	9	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88534363	G	G	88534363	3	3	61	1	0	0	0	0	1	0	0	0	4822	304	11	5	1035	5	DSPP	4	88534363	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	119102	88534363	102619913	2062	70307											
MMRN1	22915	broad.mit.edu	37	chr4	90830522	90830523	+	Missense_Mutation	DNP	GG	TT	TT													tgggaaaggaccttgtggctGgaccggtggatcctgtcctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	90830523	TT	TT	90830522	3	4	61	1	0	0	0	0	1	0	0	0	9764	1357	47	2	725	2	MMRN1	4	90830522	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	2296159	90830522	100323754	2063	70308											
FAM190A	401145	broad.mit.edu	37	chr4	91620617	91620617	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaatttatacttccctGtgctagggttagacttcccc	7	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91620617	T	T	91620617	1	4	61	0	1	0	0	0	0	0	0	0	5568	1392	48	3		3	FAM190A	4	91620617	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	790095	91620617	99533659	2064	70309											
GRID2	2895	broad.mit.edu	37	chr4	94344129	94344129	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctttaaggtaagaattActttatttatttgtctcata	5	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94344129	G	G	94344129	1	3	61	0	1	0	0	0	0	0	0	0	6838	406	14	5		5	GRID2	4	94344129	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2723512	94344129	96810147	2065	70310											
GRID2	2895	broad.mit.edu	37	chr4	94376904	94376904	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacatggactactcagtggGggtactacttcgaagggctg	13	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94376904	A	A	94376904	3	1	61	1	0	0	0	0	1	0	0	0	6838	1232	43	4	1679	4	GRID2	4	94376904	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32775	94376904	96777372	2066	70311											
BMPR1B	658	broad.mit.edu	37	chr4	96025611	96025611	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaaaattaaatgtgggCaccaagaaagaggatggtga	14	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96025611	A	A	96025611	2	1	61	1	0	0	0	0	0	0	0	1	1476	697	25	3		3	BMPR1B	4	96025611	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1648707	96025611	95128665	2067	70312											
BMPR1B	658	broad.mit.edu	37	chr4	96025725	96025725	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaatatttgcaggttggtGatataaatgatttaaagcta	8	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96025725	T	T	96025725	1	4	61	0	1	0	0	0	0	0	0	0	1476	1305	45	3		3	BMPR1B	4	96025725	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	114	96025725	95128551	2068	70313											
UNC5C	8633	broad.mit.edu	37	chr4	96090247	96090247	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggcagttgtatctgttTtccttctggctcctgctgca	10	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96090247	C	C	96090247	1	2	61	0	1	0	0	0	0	0	0	0	17119	1856	64	5		5	UNC5C	4	96090247	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	64522	96090247	95064029	2069	70314											
PDHA2	5161	broad.mit.edu	37	chr4	96761292	96761292	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgccatctacagcactcCgtgaagaatatgctggccgc	10	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761292	A	A	96761292	1	1	61	0	1	0	0	0	0	0	0	0	11759	667	23	1		1	PDHA2	4	96761292	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	671045	96761292	94392984	2070	70315											
C4orf37	285555	broad.mit.edu	37	chr4	98720423	98720423	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattgatgcagtttcttccTagcatcgatggtctttacag	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98720423	C	C	98720423	1	2	61	0	1	0	0	0	0	0	0	0	2290	1537	53	5		5	C4orf37	4	98720423	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1959131	98720423	92433853	2071	70316											
C4orf37	285555	broad.mit.edu	37	chr4	99055654	99055654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagataagataagagtcCaaggatttcagagaaaaacg	10	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99055654	A	A	99055654	1	1	61	0	1	0	0	0	0	0	0	0	2290	609	21	2		2	C4orf37	4	99055654	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	335231	99055654	92098622	2072	70317											
ADH4	127	broad.mit.edu	37	chr4	100063887	100063887	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacctcttcaatgcaaagGggcttgcctgcttcccaggc	9	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100063887	T	T	100063887	2	4	61	1	0	0	0	0	0	0	0	1	310	1219	43	2		2	ADH4	4	100063887	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1008233	100063887	91090389	2073	70318											
ADH6	130	broad.mit.edu	37	chr4	100129911	100129911	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttcttgaatgggtttctTtaagtcctgagggttgaggc	12	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100129911	G	G	100129911	3	3	61	1	0	0	0	0	1	0	0	0	312	1850	64	5	405	5	ADH6	4	100129911	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	66024	100129911	91024365	2074	70319											
ADH1A	124	broad.mit.edu	37	chr4	100205397	100205397	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgataaacaggtgaaacTtctagcatgtgctctcaatt	7	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100205397	G	G	100205397	1	3	61	0	1	0	0	0	0	0	0	0	307	1624	56	5		5	ADH1A	4	100205397	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	75486	100205397	90948879	2075	70320											
ADH1A	124	broad.mit.edu	37	chr4	100207910	100207910	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctgcgcggtgaccttggTcaagccctttcgtccctctt	11	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100207910	G	G	100207910	1	3	61	0	1	0	0	0	0	0	0	0	307	1682	58	5		5	ADH1A	4	100207910	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2513	100207910	90946366	2076	70321											
ADH1A	124	broad.mit.edu	37	chr4	100242642	100242642	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgatctatgtctttaaGccacacccactggattattc	6	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100242642	T	T	100242642	1	4	61	0	1	0	0	0	0	0	0	0	307	986	34	3		3	ADH1A	4	100242642	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34732	100242642	90911634	2077	70322											
ADH1C	126	broad.mit.edu	37	chr4	100260803	100260803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaatatttgttattaatGcatccagtgaaaacttctta	5	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100260803	T	T	100260803	3	4	61	1	0	0	0	0	1	0	0	0	309	1319	46	3	101	3	ADH1C	4	100260803	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18161	100260803	90893473	2078	70323											
BANK1	55024	broad.mit.edu	37	chr4	102946314	102946314	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaatatgaaatgccttcaGatggtgtgtttaaatgaaat	8	3	1	3	rs114425058	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102946314	A	A	102946314	1	1	61	0	1	0	0	0	0	0	0	0	1314	957	33	4		4	BANK1	4	102946314	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2685511	102946314	88207962	2079	70324											
CENPE	1062	broad.mit.edu	37	chr4	104066267	104066267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctatctgaagggcctcCtgtactcttttcatttcctc	5	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104066267	A	A	104066267	3	1	61	1	0	0	0	0	1	0	0	0	3260	680	24	2	3380	2	CENPE	4	104066267	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1119953	104066267	87088009	2080	70325											
TBCK	93627	broad.mit.edu	37	chr4	107134097	107134097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgagatttaatttctcCatgagaatactttacgtgat	7	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107134097	A	A	107134097	1	1	61	0	1	0	0	0	0	0	0	0	15758	609	21	2		2	TBCK	4	107134097	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3067830	107134097	84020179	2081	70326											
DKK2	27123	broad.mit.edu	37	chr4	107859456	107859456	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggggatatcaccaccgatCcaacagaaatccaaactacc	6	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107859456	A	A	107859456	1	1	61	0	1	0	0	0	0	0	0	0	4585	870	30	3		3	DKK2	4	107859456	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	725359	107859456	83294820	2082	70327											
SGMS2	166929	broad.mit.edu	37	chr4	108829993	108829993	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggataaccgatgttgccAcattcacttaaacatatatc	7	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108829993	C	C	108829993	1	2	61	0	1	0	0	0	0	0	0	0	14328	174	6	5		5	SGMS2	4	108829993	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	970537	108829993	82324283	2083	70328											
CYP2U1	113612	broad.mit.edu	37	chr4	108868577	108868579	+	In_Frame_Del	DEL	CTC	-	-													agtcattggcgccaaccgagCtccttccctcacagacaagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108868579	-	-	108868577	7	5	61	1	0	1	0	1	0	0	0	0	4208	797	28	0	1182	0	CYP2U1	4	108868577	In_Frame_Del	DEL	CTC	TCGA-17-Z031-01A-01W-0746-08	38584	108868577	82285699	2084	70329											
LEF1	51176	broad.mit.edu	37	chr4	109010215	109010215	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggcatctggaaggtcactCaggctgatgagatttggctc	13	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109010215	A	A	109010215	1	1	61	0	1	0	0	0	0	0	0	0	8786	841	29	3		3	LEF1	4	109010215	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	141638	109010215	82144061	2085	70330											
AGXT2L1	64850	broad.mit.edu	37	chr4	109684040	109684040	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagagtgtcccgcttactGtacagctcgcacatggtggc	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109684040	C	C	109684040	4	2	61	1	0	0	0	0	0	1	0	0	406	1372	48	4	1541	4	AGXT2L1	4	109684040	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	673825	109684040	81470236	2086	70331											
COL25A1	84570	broad.mit.edu	37	chr4	109810736	109810736	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttttggaagcccagttatTgtaggagaataagaacagag	12	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109810736	A	A	109810736	1	1	61	0	1	0	0	0	0	0	0	0	3716	1827	63	5		5	COL25A1	4	109810736	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	126696	109810736	81343540	2087	70332											
EGF	1950	broad.mit.edu	37	chr4	110884342	110884342	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaggttgttcctcaccCgataatggtggatgtagcca	11	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110884342	T	T	110884342	2	4	61	1	0	0	0	0	0	0	0	1	5002	639	23	4		4	EGF	4	110884342	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1073606	110884342	80269934	2088	70333											
ENPEP	2028	broad.mit.edu	37	chr4	111397573	111397573	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgactttggaagcaaaaatGaactttgcggagagagaggg	14	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111397573	T	T	111397573	3	4	61	1	0	0	0	0	1	0	0	0	5170	1290	45	3	5	3	ENPEP	4	111397573	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	513231	111397573	79756703	2089	70334											
ENPEP	2028	broad.mit.edu	37	chr4	111441430	111441430	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accagacagatgggttatccTgtgcttaacgtgaacggtgt	12	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111441430	A	A	111441430	2	1	61	1	0	0	0	0	0	0	0	1	5170	1567	55	5		5	ENPEP	4	111441430	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	43857	111441430	79712846	2090	70335											
ALPK1	80216	broad.mit.edu	37	chr4	113333030	113333030	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggactgtgcggctgcggcGgctattgtgttcttggtgga	18	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113333030	T	T	113333030	2	4	61	1	0	0	0	0	0	0	0	1	544	1103	39	1		1	ALPK1	4	113333030	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1891600	113333030	77821246	2091	70336											
ALPK1	80216	broad.mit.edu	37	chr4	113362410	113362410	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggcttgggcagggccgtgAcacaggttctggccaatgat	17	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113362410	T	T	113362410	1	4	61	0	1	0	0	0	0	0	0	0	544	290	10	5		5	ALPK1	4	113362410	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29380	113362410	77791866	2092	70337											
ANK2	287	broad.mit.edu	37	chr4	114266929	114266929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaataggaaaagagaaaGgaaatcctttgagttcttac	10	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114266929	T	T	114266929	1	4	61	0	1	0	0	0	0	0	0	0	621	1015	35	2		2	ANK2	4	114266929	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	904519	114266929	76887347	2093	70338											
ANK2	287	broad.mit.edu	37	chr4	114279001	114279001	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggtagacagacaatcacAgggtaccacccctgacacca	9	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114279001	T	T	114279001	3	4	61	1	0	0	0	0	1	0	0	0	621	188	7	5	9442	5	ANK2	4	114279001	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12072	114279001	76875275	2094	70339											
CAMK2D	817	broad.mit.edu	37	chr4	114468842	114468842	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccatctgatggcagtgtagCacagcctccaggatctgctg	11	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114468842	G	G	114468842	1	3	61	0	1	0	0	0	0	0	0	0	2627	725	25	4		4	CAMK2D	4	114468842	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	189841	114468842	76685434	2095	70340											
CAMK2D	817	broad.mit.edu	37	chr4	114682095	114682095	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagacggaggccggtgggtCgggggcaacgcgacccgccc	18	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114682095	A	A	114682095	1	1	61	0	1	0	0	0	0	0	0	0	2627	899	31	3		3	CAMK2D	4	114682095	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	213253	114682095	76472181	2096	70341											
NDST4	64579	broad.mit.edu	37	chr4	115751102	115751102	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgcagaattttcagtgagAcagcctcaccaattgaataa	7	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115751102	C	C	115751102	1	2	61	0	1	0	0	0	0	0	0	0	10353	290	10	5		5	NDST4	4	115751102	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1069007	115751102	75403174	2097	70342											
NDST4	64579	broad.mit.edu	37	chr4	115767154	115767154	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagggaaaaagtccatatacCtgaaggcagagaaagacaat	10	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115767154	G	G	115767154	5	3	61	1	0	0	0	0	0	0	1	0	10353	695	24	4	698	4	NDST4	4	115767154	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16052	115767154	75387122	2098	70343											
NDST4	64579	broad.mit.edu	37	chr4	116015922	116015922	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaatgtgacagacaagCacactgggagaatgccacaa	12	8	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116015922	A	A	116015922	1	1	61	0	1	0	0	0	0	0	0	0	10353	725	25	3		3	NDST4	4	116015922	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	248768	116015922	75138354	2099	70344											
PRSS12	8492	broad.mit.edu	37	chr4	119234252	119234252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagttatgggaaatagaccCcaaaaaaagccaaagatgag	9	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119234252	A	A	119234252	1	1	61	0	1	0	0	0	0	0	0	0	12721	638	22	2		2	PRSS12	4	119234252	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3218330	119234252	71920024	2100	70345											
SPATA5	166378	broad.mit.edu	37	chr4	123946105	123946105	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttagaaagaggatggggtaGaggagagaaccttttttctt	13	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123946105	A	A	123946105	1	1	61	0	1	0	0	0	0	0	0	0	15127	957	33	4		4	SPATA5	4	123946105	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4711853	123946105	67208171	2101	70346											
FAT4	79633	broad.mit.edu	37	chr4	126370776	126370776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagacatcaatgacaatGctccaagatttagcagaact	7	9	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126370776	T	T	126370776	3	4	61	1	0	0	0	0	1	0	0	0	5749	1319	46	3	8639	3	FAT4	4	126370776	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2424671	126370776	64783500	2102	70347											
PHF17	79960	broad.mit.edu	37	chr4	129764032	129764032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcctgggatgagtttgGgtaagaaaacccctgagaac	14	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129764032	T	T	129764032	1	4	61	0	1	0	0	0	0	0	0	0	11923	1247	43	2		2	PHF17	4	129764032	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3393256	129764032	61390244	2103	70348											
ELF2	1998	broad.mit.edu	37	chr4	140046387	140046387	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcatataagtctcatcatCataaaccagaacctgggctg	6	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140046387	G	G	140046387	3	3	61	1	0	0	0	0	1	0	0	0	5096	826	29	4	1702	4	ELF2	4	140046387	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10282355	140046387	51107889	2104	70349											
RNF150	57484	broad.mit.edu	37	chr4	141870377	141870377	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctttcccatcctttcctcTcttccaccctggctataaga	3	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141870377	C	C	141870377	1	2	61	0	1	0	0	0	0	0	0	0	13562	1566	54	5		5	RNF150	4	141870377	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1823990	141870377	49283899	2105	70350											
RNF150	57484	broad.mit.edu	37	chr4	141879391	141879391	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagattttggtatccatGggtaggaggggggtgctgga	18	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141879391	A	A	141879391	1	1	61	0	1	0	0	0	0	0	0	0	13562	1363	47	4		4	RNF150	4	141879391	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9014	141879391	49274885	2106	70351											
INPP4B	8821	broad.mit.edu	37	chr4	142955673	142955673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattctattactcacgcaacCcccataaacaatgcccaact	2	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142955673	A	A	142955673	1	1	61	0	1	0	0	0	0	0	0	0	7823	638	22	2		2	INPP4B	4	142955673	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1076282	142955673	48198603	2107	70352											
INPP4B	8821	broad.mit.edu	37	chr4	143114191	143114191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatatagacttccccaaaGgggagatgttattaatggaa	10	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143114191	T	T	143114191	1	4	61	0	1	0	0	0	0	0	0	0	7823	1015	35	2		2	INPP4B	4	143114191	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	158518	143114191	48040085	2108	70353											
SMARCA5	8467	broad.mit.edu	37	chr4	144449968	144449968	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttagcatggcttgaggttAttattaattttttatgcttt	7	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144449968	G	G	144449968	1	3	61	0	1	0	0	0	0	0	0	0	14885	464	16	5		5	SMARCA5	4	144449968	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1335777	144449968	46704308	2109	70354											
GYPE	2996	broad.mit.edu	37	chr4	144801812	144801812	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataatctttagagaattgcTgtgtggtaagtattgtatta	9	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144801812	A	A	144801812	1	1	61	0	1	0	0	0	0	0	0	0	6976	1595	55	5		5	GYPE	4	144801812	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	351844	144801812	46352464	2110	70355											
GYPA	2993	broad.mit.edu	37	chr4	144937399	144937399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgagtcagatgcacagGgtaataatgatctgtctatg	12	5	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144937399	T	T	144937399	1	4	61	0	1	0	0	0	0	0	0	0	6973	1247	43	2		2	GYPA	4	144937399	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	135587	144937399	46216877	2111	70356											
GYPA	2993	broad.mit.edu	37	chr4	145041018	145041018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgaaagacaaactctccCacatccctcccagcagcggc	6	16	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145041018	A	A	145041018	1	1	61	0	1	0	0	0	0	0	0	0	6973	609	21	2		2	GYPA	4	145041018	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	103619	145041018	46113258	2112	70357											
OTUD4	54726	broad.mit.edu	37	chr4	146063380	146063380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttgtaggttcacttggcCaggctggcacagtggctggt	15	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146063380	A	A	146063380	3	1	61	1	0	0	0	0	1	0	0	0	11408	595	21	2	1570	2	OTUD4	4	146063380	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1022362	146063380	45090896	2113	70358											
TTC29	83894	broad.mit.edu	37	chr4	147824904	147824904	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagagagaaaagcaccaTgaatggcattagaaagatgt	10	5	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147824904	C	C	147824904	1	2	61	0	1	0	0	0	0	0	0	0	16822	1479	51	5		5	TTC29	4	147824904	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1761524	147824904	43329372	2114	70359											
ARHGAP10	79658	broad.mit.edu	37	chr4	148823166	148823166	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaggtccttacttgctgcAgtggttcgtgattgtcactg	11	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148823166	T	T	148823166	1	4	61	0	1	0	0	0	0	0	0	0	864	203	7	5		5	ARHGAP10	4	148823166	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	998262	148823166	42331110	2115	70360											
LRBA	987	broad.mit.edu	37	chr4	151753066	151753066	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtctctgtacttggagacCataagaacagagataaagta	9	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151753066	G	G	151753066	3	3	61	1	0	0	0	0	1	0	0	0	9018	594	21	4	4079	4	LRBA	4	151753066	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2929900	151753066	39401210	2116	70361											
LRBA	987	broad.mit.edu	37	chr4	151849697	151849697	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatctccttgaagtttacTgaagaaaagctttagctcgc	7	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151849697	C	C	151849697	3	2	61	1	0	0	0	0	1	0	0	0	9018	1580	55	5	8291	5	LRBA	4	151849697	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	96631	151849697	39304579	2117	70362											
PET112L	5188	broad.mit.edu	37	chr4	152637931	152637931	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggctcctgtgactgctttCtcaatttgttcaagaaaact	7	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152637931	A	A	152637931	1	1	61	0	1	0	0	0	0	0	0	0	11828	928	32	3		3	PET112L	4	152637931	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	788234	152637931	38516345	2118	70363											
KIAA0922	23240	broad.mit.edu	37	chr4	154548359	154548359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcctaggcacactccccaGtcagcctccttcccttgggc	8	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154548359	T	T	154548359	1	4	61	0	1	0	0	0	0	0	0	0	8271	1044	36	3		3	KIAA0922	4	154548359	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1910428	154548359	36605917	2119	70364											
TLR2	7097	broad.mit.edu	37	chr4	154624011	154624011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attacgatatgctgtcaaacAcaatgacttatttgaacctc	5	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154624011	T	T	154624011	1	4	61	0	1	0	0	0	0	0	0	0	16074	174	6	5		5	TLR2	4	154624011	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	75652	154624011	36530265	2120	70365											
RNF175	285533	broad.mit.edu	37	chr4	154669893	154669893	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcatttccacgtgcatGgaatcgtggccccggtgcat	11	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154669893	T	T	154669893	2	4	61	1	0	0	0	0	0	0	0	1	13574	1335	47	2		2	RNF175	4	154669893	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45882	154669893	36484383	2121	70366											
SFRP2	6423	broad.mit.edu	37	chr4	154709985	154709985	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgagccagggccctgcagCatcgtgggcgcgcgaccccg	16	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154709985	T	T	154709985	3	4	61	1	0	0	0	0	1	0	0	0	14275	710	25	4	896	4	SFRP2	4	154709985	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40092	154709985	36444291	2122	70367											
DCHS2	54798	broad.mit.edu	37	chr4	155155626	155155626	+	3'UTR	DEL	G	-	-													caatctcgagttgctggcttGaaaacattttgttcattcat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155155626	-	-	155155626	6	5	61	0	1	1	0	1	0	0	0	0	4321	1305	45	0		0	DCHS2	4	155155626	3'UTR	DEL	G	TCGA-17-Z031-01A-01W-0746-08	445641	155155626	35998650	2123	70368											
DCHS2	54798	broad.mit.edu	37	chr4	155180878	155180878	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttctgacttcaaaatcaAgaaacttgggttctttcaca	5	9	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155180878	G	G	155180878	3	3	61	1	0	0	0	0	1	0	0	0	4321	72	3	5	3531	5	DCHS2	4	155180878	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	25252	155180878	35973398	2124	70369											
FGA	2243	broad.mit.edu	37	chr4	155505620	155505620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataggaggagacttggaGggcatagccttcagcctcag	13	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155505620	T	T	155505620	3	4	61	1	0	0	0	0	1	0	0	0	5887	1000	35	2	347	2	FGA	4	155505620	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	324742	155505620	35648656	2125	70370											
FGA	2243	broad.mit.edu	37	chr4	155506864	155506864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacttgaagatttaccacGggaagggaattcagctatcc	10	8	1	2	rs121909613		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155506864	T	T	155506864	3	4	61	1	0	0	0	0	1	0	0	0	5887	1116	39	1	935	1	FGA	4	155506864	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1244	155506864	35647412	2126	70371											
FGG	2266	broad.mit.edu	37	chr4	155531210	155531210	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatcccaatataaccttcAtcagttacctttcccagtga	3	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155531210	C	C	155531210	1	2	61	0	1	0	0	0	0	0	0	0	5927	232	8	5		5	FGG	4	155531210	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	24346	155531210	35623066	2127	70372											
RXFP1	59350	broad.mit.edu	37	chr4	159546225	159546226	+	Intron	DEL	TT	-	-													ttaagcgcattttgtgagacTtaagagagcatcaccacctg					rs61614764		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159546226	-	-	159546225	6	5	61	0	1	1	0	1	0	0	0	0	13870	1624	56	0		0	RXFP1	4	159546225	Intron	DEL	TT	TCGA-17-Z031-01A-01W-0746-08	4015015	159546225	31608051	2128	70373											
C4orf45	152940	broad.mit.edu	37	chr4	159836423	159836423	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcccatttggaatttctctGatcagtgtcctcgaaagcac	8	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159836423	T	T	159836423	3	4	61	1	0	0	0	0	1	0	0	0	2296	1299	45	3	123	3	C4orf45	4	159836423	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	290198	159836423	31317853	2129	70374											
RAPGEF2	9693	broad.mit.edu	37	chr4	160274897	160274897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatcctgcaggtttatgGgcatcaagcagccatatgga	14	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160274897	T	T	160274897	3	4	61	1	0	0	0	0	1	0	0	0	13152	1241	43	2	3953	2	RAPGEF2	4	160274897	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	438474	160274897	30879379	2130	70375											
TKTL2	84076	broad.mit.edu	37	chr4	164394574	164394574	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtctctccaagtcgctgtGaagtttcctcaggttcagca	10	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164394574	T	T	164394574	3	4	61	1	0	0	0	0	1	0	0	0	16059	1290	45	3	1571	3	TKTL2	4	164394574	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4119677	164394574	26759702	2131	70376											
MARCH1	55016	broad.mit.edu	37	chr4	165150498	165150498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggatcactcattctagGgaaagttaactgccctctca	7	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165150498	T	T	165150498	1	4	61	0	1	0	0	0	0	0	0	0	9390	1247	43	2		2	MARCH1	4	165150498	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	755924	165150498	26003778	2132	70377											
TMEM192	201931	broad.mit.edu	37	chr4	166024032	166024032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatagatacagcacaactgcCctctgaaacacttatataat	5	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166024032	A	A	166024032	1	1	61	0	1	0	0	0	0	0	0	0	16238	638	22	2		2	TMEM192	4	166024032	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	873534	166024032	25130244	2133	70378											
CPE	1363	broad.mit.edu	37	chr4	166322204	166322205	+	Intron	INS	-	T	T													tcttacttgaccttatttgaINSttttttttttctttacacag					rs147334562	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166322205	T	T	166322204	6	5	61	0	1	1	1	0	0	0	0	0	3831	348	12	0		0	CPE	4	166322204	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	298172	166322204	24832072	2134	70379											
TLL1	7092	broad.mit.edu	37	chr4	166910616	166910616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattgaccttacgcagaacCcctttggaaaccttggacat	7	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166910616	A	A	166910616	3	1	61	1	0	0	0	0	1	0	0	0	16068	623	22	2	259	2	TLL1	4	166910616	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	588412	166910616	24243660	2135	70380											
SPOCK3	50859	broad.mit.edu	37	chr4	167675843	167675843	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttaaacatccagccaagTgagtccttgcaaattggcaa	8	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167675843	A	A	167675843	2	1	61	1	0	0	0	0	0	0	0	1	15199	1683	59	5		5	SPOCK3	4	167675843	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	765227	167675843	23478433	2136	70381											
DDX60L	91351	broad.mit.edu	37	chr4	169296600	169296600	+	Frame_Shift_Del	DEL	C	-	-													agcaatcagcaggaaggaggCaaaatccttcattactgcca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169296600	-	-	169296600	7	5	61	1	0	1	0	1	0	0	0	0	4412	710	25	0	579	0	DDX60L	4	169296600	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	1620757	169296600	21857676	2137	70382											
DDX60L	91351	broad.mit.edu	37	chr4	169343778	169343778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagttgaaaccgagctggtCcaatgtcaatcgaatatttc	9	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169343778	A	A	169343778	3	1	61	1	0	0	0	0	1	0	0	0	4412	855	30	3	3071	3	DDX60L	4	169343778	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47178	169343778	21810498	2138	70383											
CLCN3	1182	broad.mit.edu	37	chr4	170601243	170601243	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaggcagcattaacagttCtacacatttactggatcttt	8	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170601243	T	T	170601243	3	4	61	1	0	0	0	0	1	0	0	0	3495	913	32	4	209	4	CLCN3	4	170601243	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1257465	170601243	20553033	2139	70384											
GALNTL6	442117	broad.mit.edu	37	chr4	172735867	172735867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcggagcccggggagcagCaggtaagtgccacccagaga	16	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172735867	A	A	172735867	3	1	61	1	0	0	0	0	1	0	0	0	6287	711	25	3	138	3	GALNTL6	4	172735867	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2134624	172735867	18418409	2140	70385											
GALNTL6	442117	broad.mit.edu	37	chr4	172824434	172824434	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgcaggtcagtgggtgCgcgcaccgtgcgcgagctga	19	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172824434	G	G	172824434	1	3	61	0	1	0	0	0	0	0	0	0	6287	783	27	4		4	GALNTL6	4	172824434	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	88567	172824434	18329842	2141	70386											
MORF4	10934	broad.mit.edu	37	chr4	174537450	174537450	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattatctgtgtttccatgAgatttcttgtaatttgcata	6	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174537450	C	C	174537450	2	2	61	1	0	0	0	0	0	0	0	1	9799	291	11	5		5	MORF4	4	174537450	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1713016	174537450	16616826	2142	70387											
FBXO8	26269	broad.mit.edu	37	chr4	175180957	175180957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtatatggaacagtgacCccaagtggatttgcacaacc	9	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175180957	A	A	175180957	3	1	61	1	0	0	0	0	1	0	0	0	5818	623	22	2	626	2	FBXO8	4	175180957	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	643507	175180957	15973319	2143	70388											
GLRA3	8001	broad.mit.edu	37	chr4	175688065	175688065	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgttgccattaatgtAattacagattactctagtgt	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175688065	T	T	175688065	1	4	61	0	1	0	0	0	0	0	0	0	6520	377	13	5		5	GLRA3	4	175688065	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	507108	175688065	15466211	2144	70389											
GLRA3	8001	broad.mit.edu	37	chr4	175750002	175750002	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatcctgaaaatagtcttatCcaaggcatggggaaccagaa	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175750002	G	G	175750002	1	3	61	0	1	0	0	0	0	0	0	0	6520	870	30	4		4	GLRA3	4	175750002	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61937	175750002	15404274	2145	70390											
GPM6A	2823	broad.mit.edu	37	chr4	176572897	176572897	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggtactgataattccaAagtgatctataatattttag	6	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176572897	T	T	176572897	1	4	61	0	1	0	0	0	0	0	0	0	6680	29	1	5		5	GPM6A	4	176572897	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	822895	176572897	14581379	2146	70391											
WDR17	116966	broad.mit.edu	37	chr4	177073085	177073085	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagattaggacaaattcaGagatactgtgaacttatggt	10	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177073085	T	T	177073085	3	4	61	1	0	0	0	0	1	0	0	0	17404	933	33	3	2565	3	WDR17	4	177073085	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	500188	177073085	14081191	2147	70392											
VEGFC	7424	broad.mit.edu	37	chr4	177642703	177642703	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaggggtaaatgtgacctaGatcagagcgggattagcagc	14	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177642703	T	T	177642703	1	4	61	0	1	0	0	0	0	0	0	0	17279	957	33	3		3	VEGFC	4	177642703	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	569618	177642703	13511573	2148	70393											
VEGFC	7424	broad.mit.edu	37	chr4	177648872	177648872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtttaaacacatcatcccCaaagttaaagcttctgatta	4	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177648872	A	A	177648872	1	1	61	0	1	0	0	0	0	0	0	0	17279	609	21	2		2	VEGFC	4	177648872	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6169	177648872	13505404	2149	70394											
VEGFC	7424	broad.mit.edu	37	chr4	177648969	177648969	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgctggtgttcatgcacTgcagcccctcactattgcag	10	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177648969	A	A	177648969	3	1	61	1	0	0	0	0	1	0	0	0	17279	1580	55	5	767	5	VEGFC	4	177648969	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	97	177648969	13505307	2150	70395											
NEIL3	55247	broad.mit.edu	37	chr4	178243682	178243682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggatatgtttacagtggcGtggaaactttggggaaggag	16	3	0	0	rs34112288	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178243682	T	T	178243682	3	4	61	1	0	0	0	0	1	0	0	0	10415	1145	40	3	232	3	NEIL3	4	178243682	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	594713	178243682	12910594	2151	70396											
ODZ3	55714	broad.mit.edu	37	chr4	183635306	183635306	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaatggctggcattgtgTgtgccagcctggatggagag	15	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183635306	C	C	183635306	3	2	61	1	0	0	0	0	1	0	0	0	10931	1696	59	5	2334	5	ODZ3	4	183635306	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5391624	183635306	7518970	2152	70397											
ODZ3	55714	broad.mit.edu	37	chr4	183650131	183650131	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacagatggactcattgaCtgcatggatcccgattgctg	10	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183650131	T	T	183650131	2	4	61	1	0	0	0	0	0	0	0	1	10931	564	20	4		4	ODZ3	4	183650131	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14825	183650131	7504145	2153	70398											
ODZ3	55714	broad.mit.edu	37	chr4	183658274	183658274	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaagtttttctcaaagCcagaactatcataaattaat	5	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183658274	G	G	183658274	1	3	61	0	1	0	0	0	0	0	0	0	10931	754	26	4		4	ODZ3	4	183658274	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8143	183658274	7496002	2154	70399											
WWC2	80014	broad.mit.edu	37	chr4	184187120	184187120	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagtgtaagtaaaatcagcGaagatcaaattgaggaactt	9	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184187120	T	T	184187120	1	4	61	0	1	0	0	0	0	0	0	0	17539	1073	37	3		3	WWC2	4	184187120	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	528846	184187120	6967156	2155	70400											
KIAA1430	57587	broad.mit.edu	37	chr4	186083983	186083983	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacggacattagggggtTtaggtcttcttcgagggtgg	16	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186083983	C	C	186083983	3	2	61	1	0	0	0	0	1	0	0	0	8302	1841	64	5	34	5	KIAA1430	4	186083983	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1896863	186083983	5070293	2156	70401											
PDLIM3	27295	broad.mit.edu	37	chr4	186423597	186423597	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcggcacacacgaagcactCagggtgccggtacttatccc	11	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186423597	G	G	186423597	3	3	61	1	0	0	0	0	1	0	0	0	11775	835	29	4	152	4	PDLIM3	4	186423597	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	339614	186423597	4730679	2157	70402											
CYP4V2	285440	broad.mit.edu	37	chr4	187122322	187122322	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcatacaggtcatcgctgaAcgggccaatgaaatgaacgc	10	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187122322	T	T	187122322	3	4	61	1	0	0	0	0	1	0	0	0	4225	40	2	5	839	5	CYP4V2	4	187122322	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	698725	187122322	4031954	2158	70403											
KLKB1	3818	broad.mit.edu	37	chr4	187177122	187177122	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataactttatttgaccaaacTctaatttaaaaattatgttt	2	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187177122	A	A	187177122	1	1	61	0	1	0	0	0	0	0	0	0	8483	1566	54	5		5	KLKB1	4	187177122	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	54800	187177122	3977154	2159	70404											
F11	2160	broad.mit.edu	37	chr4	187196955	187196955	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcagtaacatttgtctacTgaagcacacccaaacaggga	7	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187196955	C	C	187196955	3	2	61	1	0	0	0	0	1	0	0	0	5380	1580	55	5	518	5	F11	4	187196955	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19833	187196955	3957321	2160	70405											
FAT1	2195	broad.mit.edu	37	chr4	187521300	187521300	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgacggatgtggccaccaAaaaacacatagttatccagg	10	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187521300	C	C	187521300	3	2	61	1	0	0	0	0	1	0	0	0	5746	14	1	5	1935	5	FAT1	4	187521300	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	324345	187521300	3632976	2161	70406											
FAT1	2195	broad.mit.edu	37	chr4	187522509	187522509	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcatggtcagtttcatctCtaatttgttttcattttccg	5	10	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187522509	A	A	187522509	4	1	61	1	0	0	0	0	0	1	0	0	5746	922	32	3	2240	3	FAT1	4	187522509	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1209	187522509	3631767	2162	70407											
FAT1	2195	broad.mit.edu	37	chr4	187540974	187540974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtcaaggagtcagttgCgcgtatgctcagcttatatg	12	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187540974	A	A	187540974	3	1	61	1	0	0	0	0	1	0	0	0	5746	768	27	3	7072	3	FAT1	4	187540974	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18465	187540974	3613302	2163	70408											
FAT1	2195	broad.mit.edu	37	chr4	187541170	187541170	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctggatgctctctgcaatCtctgcactgtagaaaggttt	9	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187541170	A	A	187541170	3	1	61	1	0	0	0	0	1	0	0	0	5746	912	32	3	7268	3	FAT1	4	187541170	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	196	187541170	3613106	2164	70409											
FAT1	2195	broad.mit.edu	37	chr4	187630266	187630266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccgttagcttggccatgCtgctgatgccactgctccca	10	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187630266	A	A	187630266	3	1	61	1	0	0	0	0	1	0	0	0	5746	797	28	3	13154	3	FAT1	4	187630266	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	89096	187630266	3524010	2165	70410											
TRIML2	205860	broad.mit.edu	37	chr4	189022476	189022476	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacacacacacgtcataataGatagatatctatatctatat	3	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189022476	C	C	189022476	1	2	61	0	1	0	0	0	0	0	0	0	16676	957	33	4		4	TRIML2	4	189022476	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1392210	189022476	2131800	2166	70411											
TRIML2	205860	broad.mit.edu	37	chr4	189025966	189025966	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactggtaatttccccccaAgaatcaagataagcactcac	5	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189025966	G	G	189025966	1	3	61	0	1	0	0	0	0	0	0	0	16676	87	3	5		5	TRIML2	4	189025966	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3490	189025966	2128310	2167	70412											
TRIML1	339976	broad.mit.edu	37	chr4	189065004	189065004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgtaggaagtgagaggaGccctggaaaggtaggctttc	15	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189065004	T	T	189065004	3	4	61	1	0	0	0	0	1	0	0	0	16675	971	34	3	762	3	TRIML1	4	189065004	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39038	189065004	2089272	2168	70413											
PDCD6	10016	broad.mit.edu	37	chr5	272909	272909	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgggccagtgggaactGggtctccggaccaagaagcc	16	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	272909	C	C	272909	1	2	61	0	1	0	0	0	0	0	0	0	11717	1363	47	4		4	PDCD6	5	272909	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08		272909	180642351	2169	70414											
PDCD6	10016	broad.mit.edu	37	chr5	289656	289656	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatttcgctgcaagtcgcttGaatggctgtttctctgactt	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	289656	T	T	289656	1	4	61	0	1	0	0	0	0	0	0	0	11717	1305	45	3		3	PDCD6	5	289656	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16747	289656	180625604	2170	70415											
AHRR	57491	broad.mit.edu	37	chr5	424176	424176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaacagagggcaagagGgggtgggggcgttaaaccac	18	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	424176	T	T	424176	1	4	61	0	1	0	0	0	0	0	0	0	417	1247	43	2		2	AHRR	5	424176	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	134520	424176	180491084	2171	70416											
AHRR	57491	broad.mit.edu	37	chr5	434498	434498	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagggtgctgcagacggctGtgtgcccagccaggtgtggc	18	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	434498	C	C	434498	3	2	61	1	0	0	0	0	1	0	0	0	417	1377	48	4	1755	4	AHRR	5	434498	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10322	434498	180480762	2172	70417											
SLC9A3	6550	broad.mit.edu	37	chr5	479863	479863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgggacgcgggtgcaGgggcctctcctcactgcccc	15	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	479863	T	T	479863	1	4	61	0	1	0	0	0	0	0	0	0	14827	1015	35	2		2	SLC9A3	5	479863	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45365	479863	180435397	2173	70418											
TRIP13	9319	broad.mit.edu	37	chr5	916273	916273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgtcttgagtcctttgGgaggaggcggctgtgccaca	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	916273	T	T	916273	1	4	61	0	1	0	0	0	0	0	0	0	16682	1247	43	2		2	TRIP13	5	916273	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	436410	916273	179998987	2174	70419											
SLC6A19	340024	broad.mit.edu	37	chr5	1219796	1219796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtaggggccacggtggGgacaggtgcctctaatgcag	17	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1219796	T	T	1219796	1	4	61	0	1	0	0	0	0	0	0	0	14796	1247	43	2		2	SLC6A19	5	1219796	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	303523	1219796	179695464	2175	70420											
SLC6A18	348932	broad.mit.edu	37	chr5	1239458	1239458	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtacaggtcacacttGctcacgagtgtccccaaagc	9	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1239458	C	C	1239458	1	2	61	0	1	0	0	0	0	0	0	0	14795	1334	46	4		4	SLC6A18	5	1239458	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19662	1239458	179675802	2176	70421											
ADAMTS16	170690	broad.mit.edu	37	chr5	5186188	5186188	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccccagcctcccaaggaaGacctcttcatcttgccagat	7	16	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5186188	T	T	5186188	3	4	61	1	0	0	0	0	1	0	0	0	261	942	33	3	805	3	ADAMTS16	5	5186188	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3946730	5186188	175729072	2177	70422											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239336	5239336	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgtgtaacgggaataacTcagcctgcacgattcacagg	13	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5239336	G	G	5239336	3	3	61	1	0	0	0	0	1	0	0	0	261	1551	54	5	2285	5	ADAMTS16	5	5239336	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	53148	5239336	175675924	2178	70423											
ADCY2	108	broad.mit.edu	37	chr5	7698554	7698554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtacatgtgcacaacgtGcaggtttgttacataggtat	13	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7698554	T	T	7698554	1	4	61	0	1	0	0	0	0	0	0	0	294	1334	46	3		3	ADCY2	5	7698554	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2459218	7698554	173216706	2179	70424											
ADCY2	108	broad.mit.edu	37	chr5	7727311	7727311	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgccagcgttcaagtattAtgtgacttgtgcctgtctca	9	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7727311	T	T	7727311	3	4	61	1	0	0	0	0	1	0	0	0	294	449	16	5	1862	5	ADCY2	5	7727311	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	28757	7727311	173187949	2180	70425											
ADCY2	108	broad.mit.edu	37	chr5	7804840	7804840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttaacggcacaggtgaGcctcaaccccatccacaaac	6	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7804840	T	T	7804840	1	4	61	0	1	0	0	0	0	0	0	0	294	986	34	3		3	ADCY2	5	7804840	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	77529	7804840	173110420	2181	70426											
SEMA5A	9037	broad.mit.edu	37	chr5	9042873	9042873	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtgtatttttggcagcaaTgggacactctggtggcttga	13	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9042873	G	G	9042873	1	3	61	0	1	0	0	0	0	0	0	0	14150	1479	51	5		5	SEMA5A	5	9042873	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1238033	9042873	171872387	2182	70427											
SEMA5A	9037	broad.mit.edu	37	chr5	9050639	9050639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccacattcatgcttcatGtatgtttgtctaatgattct	6	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9050639	T	T	9050639	1	4	61	0	1	0	0	0	0	0	0	0	14150	1392	48	3		3	SEMA5A	5	9050639	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7766	9050639	171864621	2183	70428											
SEMA5A	9037	broad.mit.edu	37	chr5	9052122	9052122	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcacactcagaccagtccGaccactccgaccagctctct	5	19	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9052122	T	T	9052122	4	4	61	1	0	0	0	0	0	1	0	0	14150	1059	37	3	532	3	SEMA5A	5	9052122	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1483	9052122	171863138	2184	70429											
SEMA5A	9037	broad.mit.edu	37	chr5	9108455	9108455	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtgccacttgaaaccacTgacgtttccatctccatccc	5	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9108455	G	G	9108455	1	3	61	0	1	0	0	0	0	0	0	0	14150	1595	55	5		5	SEMA5A	5	9108455	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	56333	9108455	171806805	2185	70430											
SEMA5A	9037	broad.mit.edu	37	chr5	9154866	9154866	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtctcacaaaccaatcccTggttaaacagagtgtgctgt	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9154866	A	A	9154866	1	1	61	0	1	0	0	0	0	0	0	0	14150	1595	55	5		5	SEMA5A	5	9154866	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	46411	9154866	171760394	2186	70431											
SEMA5A	9037	broad.mit.edu	37	chr5	9319564	9319564	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagatcagtagaggacacaGaaaaaagatagattagttac	11	4	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9319564	T	T	9319564	1	4	61	0	1	0	0	0	0	0	0	0	14150	957	33	3		3	SEMA5A	5	9319564	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	164698	9319564	171595696	2187	70432											
SEMA5A	9037	broad.mit.edu	37	chr5	9342367	9342368	+	Intron	INS	-	T	T													aataaagggcagctcttgtgINSgaagacatgacagtcattcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9342368	T	T	9342367	6	5	61	0	1	1	1	0	0	0	0	0	14150	1363	47	0		0	SEMA5A	5	9342367	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	22803	9342367	171572893	2188	70433											
SEMA5A	9037	broad.mit.edu	37	chr5	9379919	9379919	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacggctttgcaatcagtgCgtgctggttccttaccttta	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9379919	T	T	9379919	1	4	61	0	1	0	0	0	0	0	0	0	14150	783	27	4		4	SEMA5A	5	9379919	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37552	9379919	171535341	2189	70434											
SEMA5A	9037	broad.mit.edu	37	chr5	9442458	9442458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacaccctatgcatgttGtcatacatccttgtggggga	11	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9442458	T	T	9442458	1	4	61	0	1	0	0	0	0	0	0	0	14150	1392	48	3		3	SEMA5A	5	9442458	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62539	9442458	171472802	2190	70435											
SEMA5A	9037	broad.mit.edu	37	chr5	9508768	9508768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcgggtgtccagagaatGgtcctcctttgtaaggtctt	12	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9508768	T	T	9508768	1	4	61	0	1	0	0	0	0	0	0	0	14150	1363	47	2		2	SEMA5A	5	9508768	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66310	9508768	171406492	2191	70436											
MARCH6	10299	broad.mit.edu	37	chr5	10397483	10397483	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgtgctttttttttTtatagtattatggtaggaat	9	1	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10397483	A	A	10397483	1	1	61	0	1	0	0	0	0	0	0	0	9397	1856	64	5		5	MARCH6	5	10397483	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	888715	10397483	170517777	2192	70437											
MARCH6	10299	broad.mit.edu	37	chr5	10414706	10414706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgttccccagtctggaGggtagtagtatgatcatagc	12	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10414706	T	T	10414706	1	4	61	0	1	0	0	0	0	0	0	0	9397	1015	35	2		2	MARCH6	5	10414706	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17223	10414706	170500554	2193	70438											
CTNND2	1501	broad.mit.edu	37	chr5	11012511	11012511	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagatctgagggcttgtcCcgctgcttccagagaacatg	11	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11012511	G	G	11012511	1	3	61	0	1	0	0	0	0	0	0	0	4054	638	22	4		4	CTNND2	5	11012511	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	597805	11012511	169902749	2194	70439											
CTNND2	1501	broad.mit.edu	37	chr5	11098682	11098682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttattgtaatgaactggcCataccttccagctccctgca	6	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11098682	A	A	11098682	1	1	61	0	1	0	0	0	0	0	0	0	4054	609	21	2		2	CTNND2	5	11098682	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	86171	11098682	169816578	2195	70440											
CTNND2	1501	broad.mit.edu	37	chr5	11159704	11159704	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaccttaggcacccggtggCgttacgcagcacctgtgatg	13	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11159704	G	G	11159704	3	3	61	1	0	0	0	0	1	0	0	0	4054	768	27	4	1578	4	CTNND2	5	11159704	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61022	11159704	169755556	2196	70441											
CTNND2	1501	broad.mit.edu	37	chr5	11181868	11181868	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtgtgtgtggatgtgtGtatgtgtgtgtgtgtgtgtc	18	2	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11181868	A	A	11181868	1	1	61	0	1	0	0	0	0	0	0	0	4054	1392	48	4		4	CTNND2	5	11181868	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22164	11181868	169733392	2197	70442											
CTNND2	1501	broad.mit.edu	37	chr5	11223074	11223074	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcctgttctttctcctttCtcattggaggtgggagggag	12	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11223074	G	G	11223074	1	3	61	0	1	0	0	0	0	0	0	0	4054	928	32	4		4	CTNND2	5	11223074	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41206	11223074	169692186	2198	70443											
CTNND2	1501	broad.mit.edu	37	chr5	11236872	11236872	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcgttagactggaccgaGggaaactggtgctgcaacat	14	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11236872	A	A	11236872	2	1	61	1	0	0	0	0	0	0	0	1	4054	987	35	4		4	CTNND2	5	11236872	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13798	11236872	169678388	2199	70444											
CTNND2	1501	broad.mit.edu	37	chr5	11346382	11346382	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaaaagccaaccctttAatagtcagtgacataaatgc	6	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11346382	T	T	11346382	1	4	61	0	1	0	0	0	0	0	0	0	4054	377	13	5		5	CTNND2	5	11346382	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	109510	11346382	169568878	2200	70445											
CTNND2	1501	broad.mit.edu	37	chr5	11586618	11586618	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagaattcacacgttaatAagctacctgtagaaacacaa	5	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11586618	T	T	11586618	1	4	61	0	1	0	0	0	0	0	0	0	4054	377	13	5		5	CTNND2	5	11586618	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	240236	11586618	169328642	2201	70446											
TRIO	7204	broad.mit.edu	37	chr5	14194008	14194009	+	Intron	DEL	GT	-	-													tgaccgtttactgtgtgttcGtgtgcctggtacagactctg					rs141205862		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14194009	-	-	14194008	6	5	61	0	1	1	0	1	0	0	0	0	16677	1160	40	0		0	TRIO	5	14194008	Intron	DEL	GT	TCGA-17-Z031-01A-01W-0746-08	2607390	14194008	166721252	2202	70447											
TRIO	7204	broad.mit.edu	37	chr5	14378052	14378052	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaaagtctaaataaaaatGaatggaatttcgcggttgtt	8	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14378052	T	T	14378052	1	4	61	0	1	0	0	0	0	0	0	0	16677	1305	45	3		3	TRIO	5	14378052	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	184044	14378052	166537208	2203	70448											
FAM105A	54491	broad.mit.edu	37	chr5	14607376	14607376	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttgtgtgctgtgctatacAgcaaattgtgtgtaataaac	11	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14607376	T	T	14607376	1	4	61	0	1	0	0	0	0	0	0	0	5433	203	7	5		5	FAM105A	5	14607376	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	229324	14607376	166307884	2204	70449											
FBXL7	23194	broad.mit.edu	37	chr5	15770952	15770952	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctaatccccttcctttcTcgctacaccacacagcctct	3	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15770952	C	C	15770952	1	2	61	0	1	0	0	0	0	0	0	0	5781	1566	54	5		5	FBXL7	5	15770952	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1163576	15770952	165144308	2205	70450											
FBXL7	23194	broad.mit.edu	37	chr5	15802370	15802370	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactttccacccagtagccaGtgtgacctttgagaagcatg	9	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15802370	C	C	15802370	1	2	61	0	1	0	0	0	0	0	0	0	5781	1044	36	4		4	FBXL7	5	15802370	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31418	15802370	165112890	2206	70451											
FBXL7	23194	broad.mit.edu	37	chr5	15928113	15928113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcctcgtcctccatcaCcggggagacggtggccatgg	12	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928113	A	A	15928113	3	1	61	1	0	0	0	0	1	0	0	0	5781	507	18	3	252	3	FBXL7	5	15928113	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	125743	15928113	164987147	2207	70452											
MARCH11	441061	broad.mit.edu	37	chr5	16067910	16067910	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaatgagacctaaaatTtgagaaaataaaaaaccaaa	5	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16067910	A	A	16067910	1	1	61	0	1	0	0	0	0	0	0	0	9392	1856	64	5		5	MARCH11	5	16067910	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	139797	16067910	164847350	2208	70453											
MARCH11	441061	broad.mit.edu	37	chr5	16079648	16079648	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcacctctctgcacttacTcttcatccctattgggcaac	4	16	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16079648	G	G	16079648	1	3	61	0	1	0	0	0	0	0	0	0	9392	1566	54	5		5	MARCH11	5	16079648	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	11738	16079648	164835612	2209	70454											
MYO10	4651	broad.mit.edu	37	chr5	16681406	16681406	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctcagggttcgggcagcCagcctggttacctgtctctt	12	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16681406	T	T	16681406	1	4	61	0	1	0	0	0	0	0	0	0	10156	609	21	4		4	MYO10	5	16681406	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	601758	16681406	164233854	2210	70455											
MYO10	4651	broad.mit.edu	37	chr5	16766406	16766406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacacacctgaatccctcaCgcagagtttagagattgcat	8	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16766406	A	A	16766406	1	1	61	0	1	0	0	0	0	0	0	0	10156	551	19	3		3	MYO10	5	16766406	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85000	16766406	164148854	2211	70456											
BASP1	10409	broad.mit.edu	37	chr5	17275491	17275491	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgaggccaaggagggcaagGagaagcccgaccaggacgcc	16	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17275491	C	C	17275491	3	2	61	1	0	0	0	0	1	0	0	0	1322	1175	41	4	168	4	BASP1	5	17275491	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	509085	17275491	163639769	2212	70457											
CDH12	1010	broad.mit.edu	37	chr5	21751862	21751862	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccttaagtgactttatcaGggttataactctcttcttcg	6	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21751862	A	A	21751862	3	1	61	1	0	0	0	0	1	0	0	0	3128	1000	35	4	19	4	CDH12	5	21751862	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4476371	21751862	159163398	2213	70458											
CDH12	1010	broad.mit.edu	37	chr5	21884546	21884546	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggctggctgaaaatcactAtaaccatcagttactggttt	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21884546	T	T	21884546	1	4	61	0	1	0	0	0	0	0	0	0	3128	464	16	5		5	CDH12	5	21884546	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	132684	21884546	159030714	2214	70459											
CDH12	1010	broad.mit.edu	37	chr5	21975282	21975282	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattaatatcctgcactttGatgatgaattctgattcagg	7	7	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21975282	T	T	21975282	2	4	61	1	0	0	0	0	0	0	0	1	3128	1280	45	3		3	CDH12	5	21975282	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	90736	21975282	158939978	2215	70460											
CDH12	1010	broad.mit.edu	37	chr5	21975417	21975418	+	Missense_Mutation	DNP	GG	TT	TT													tcccctgtggtttcatcaatGgtaaaaacggtgccagcgcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21975418	TT	TT	21975417	3	4	61	1	0	0	0	0	1	0	0	0	3128	1335	47	2	2115	2	CDH12	5	21975417	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	135	21975417	158939843	2216	70461											
CDH12	1010	broad.mit.edu	37	chr5	22142659	22142659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggatgaagaaaactcaGctaaatttcctgtaggaagg	12	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22142659	T	T	22142659	1	4	61	0	1	0	0	0	0	0	0	0	3128	986	34	3		3	CDH12	5	22142659	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	167242	22142659	158772601	2217	70462											
PRDM9	56979	broad.mit.edu	37	chr5	23509511	23509511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctatgtcctacacacaGggtagaggaaaaggaccagc	12	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509511	T	T	23509511	1	4	61	0	1	0	0	0	0	0	0	0	12569	1015	35	2		2	PRDM9	5	23509511	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1366852	23509511	157405749	2218	70463											
CDH10	1008	broad.mit.edu	37	chr5	24488111	24488112	+	Missense_Mutation	DNP	CC	AA	AA													tcctcaatggctgcaggattCctcagggtgccgatatcaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24488112	AA	AA	24488111	3	1	61	1	0	0	0	0	1	0	0	0	3126	854	30	3	342	3	CDH10	5	24488111	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	978600	24488111	156427149	2219	70464											
CDH10	1008	broad.mit.edu	37	chr5	24491640	24491640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaattcttcaaaatcataCtaaagagcctagaaaatgct	4	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24491640	A	A	24491640	1	1	61	0	1	0	0	0	0	0	0	0	3126	580	20	3		3	CDH10	5	24491640	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3529	24491640	156423620	2220	70465											
CDH10	1008	broad.mit.edu	37	chr5	24491723	24491723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaggatggcgatcaagGccccagtgctgaggccggca	17	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24491723	T	T	24491723	3	4	61	1	0	0	0	0	1	0	0	0	3126	1203	42	3	536	3	CDH10	5	24491723	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	83	24491723	156423537	2221	70466											
CDH10	1008	broad.mit.edu	37	chr5	24511552	24511552	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatttttcccagtgtcagCatcagttgctttgacacttc	7	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24511552	G	G	24511552	3	3	61	1	0	0	0	0	1	0	0	0	3126	710	25	4	1508	4	CDH10	5	24511552	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19829	24511552	156403708	2222	70467											
CDH9	1007	broad.mit.edu	37	chr5	26962180	26962180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttgagtgagaacatgcGgtgtttgtttttcagttctt	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26962180	T	T	26962180	1	4	61	0	1	0	0	0	0	0	0	0	3147	1131	39	1		1	CDH9	5	26962180	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2450628	26962180	153953080	2223	70468											
CDH6	1004	broad.mit.edu	37	chr5	31226646	31226647	+	Intron	INS	-	T	T													taatcagccgctttcttttcINSttggaagaggaacccagggc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31226647	T	T	31226646	6	5	61	0	1	1	1	0	0	0	0	0	3144	928	32	0		0	CDH6	5	31226646	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	4264466	31226646	149688614	2224	70469											
CDH6	1004	broad.mit.edu	37	chr5	31316245	31316245	+	Intron	SNP	C	T	T													atgagaatgaaggagttgagCggatgttgtctaaagggaat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31316245	T	T	31316245	1	4	61	0	1	0	0	0	0	0	0	0	3144	783	27	4		4	CDH6	5	31316245	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	89599	31316245	149599015	2225	70470	323	2									
CDH6	1004	broad.mit.edu	37	chr5	31316247	31316247	+	Intron	SNP	G	T	T													gagaatgaaggagttgagcgGatgttgtctaaagggaatcg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31316247	T	T	31316247	1	4	61	0	1	0	0	0	0	0	0	0	3144	1189	41	3		3	CDH6	5	31316247	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2	31316247	149599013	2226	70471	323	2									
CDH6	1004	broad.mit.edu	37	chr5	31317742	31317742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttaatacatgacgcagTatccacatacattcaccact	4	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31317742	A	A	31317742	1	1	61	0	1	0	0	0	0	0	0	0	3144	1653	57	5		5	CDH6	5	31317742	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1495	31317742	149597518	2227	70472											
PDZD2	23037	broad.mit.edu	37	chr5	31799691	31799691	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaacccaccagggtccTgtgctggatgtgggctgcat	14	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31799691	A	A	31799691	2	1	61	1	0	0	0	0	0	0	0	1	11795	1567	55	5		5	PDZD2	5	31799691	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	481949	31799691	149115569	2228	70473											
PDZD2	23037	broad.mit.edu	37	chr5	31995642	31995642	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcaatgccgtgtgtcTgtcaacctccttcatggtgt	10	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31995642	C	C	31995642	1	2	61	0	1	0	0	0	0	0	0	0	11795	1595	55	5		5	PDZD2	5	31995642	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	195951	31995642	148919618	2229	70474											
ZFR	51663	broad.mit.edu	37	chr5	32397468	32397468	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgtggaaaaaaaattcaaGaatcatcatagttgaagatt	9	3	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32397468	A	A	32397468	1	1	61	0	1	0	0	0	0	0	0	0	17785	957	33	4		4	ZFR	5	32397468	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	401826	32397468	148517792	2230	70475											
ZFR	51663	broad.mit.edu	37	chr5	32419823	32419823	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctatcagtacatgtgtattTtggaagccccaagtttgaga	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32419823	C	C	32419823	1	2	61	0	1	0	0	0	0	0	0	0	17785	1856	64	5		5	ZFR	5	32419823	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	22355	32419823	148495437	2231	70476											
TARS	6897	broad.mit.edu	37	chr5	33467558	33467558	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttttaatgtatcagaagCtatggggtaggttttgggtc	12	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33467558	G	G	33467558	1	3	61	0	1	0	0	0	0	0	0	0	15678	812	28	4		4	TARS	5	33467558	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1047735	33467558	147447702	2232	70477											
ADAMTS12	81792	broad.mit.edu	37	chr5	33614247	33614247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtggagccctgcagatccAtgggcagagagcacaaagca	13	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33614247	T	T	33614247	1	4	61	0	1	0	0	0	0	0	0	0	257	232	8	5		5	ADAMTS12	5	33614247	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	146689	33614247	147301013	2233	70478											
ADAMTS12	81792	broad.mit.edu	37	chr5	33648771	33648771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaggcatgtgattccagCttaattgttttcccttacag	8	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33648771	A	A	33648771	1	1	61	0	1	0	0	0	0	0	0	0	257	812	28	3		3	ADAMTS12	5	33648771	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34524	33648771	147266489	2234	70479											
ADAMTS12	81792	broad.mit.edu	37	chr5	33665990	33665990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagatgaggcaggaaaatGggtctagaggcaggtaaaac	16	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33665990	T	T	33665990	1	4	61	0	1	0	0	0	0	0	0	0	257	1363	47	2		2	ADAMTS12	5	33665990	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17219	33665990	147249270	2235	70480											
ADAMTS12	81792	broad.mit.edu	37	chr5	33672271	33672271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatccacatactcacataCacacatacacacagatccac	1	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33672271	A	A	33672271	1	1	61	0	1	0	0	0	0	0	0	0	257	493	17	3		3	ADAMTS12	5	33672271	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6281	33672271	147242989	2236	70481											
ADAMTS12	81792	broad.mit.edu	37	chr5	33689517	33689518	+	Intron	INS	-	A	A													ggaatggaaaggatcaactcINSaaaaaaaaaaaatcatacat					rs113093925		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33689518	A	A	33689517	6	5	61	0	1	1	1	0	0	0	0	0	257	841	29	0		0	ADAMTS12	5	33689517	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	17246	33689517	147225743	2237	70482											
ADAMTS12	81792	broad.mit.edu	37	chr5	33815899	33815899	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaccagtcctaattccatctCctctaactatccaggaagga	6	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33815899	G	G	33815899	1	3	61	0	1	0	0	0	0	0	0	0	257	870	30	4		4	ADAMTS12	5	33815899	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	126382	33815899	147099361	2238	70483											
RAI14	26064	broad.mit.edu	37	chr5	34795968	34795968	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacatgaaatggcggggggCgggggggaaactctgttgga	20	5	1	1	rs12521356		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34795968	G	G	34795968	1	3	61	0	1	0	0	0	0	0	0	0	13116	783	27	4		4	RAI14	5	34795968	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	980069	34795968	146119292	2239	70484											
RAI14	26064	broad.mit.edu	37	chr5	34796101	34796102	+	Missense_Mutation	DNP	TG	AT	AT													ctcagggtcatgattacacaTggtgtggatgtgacagccca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	34796102	AT	AT	34796101	3	1	61	1	0	0	0	0	1	0	0	0	13116	1461	51	5	300	5	RAI14	5	34796101	Missense_Mutation	DNP	TG	TCGA-17-Z031-01A-01W-0746-08	133	34796101	146119159	2240	70485											
RAD1	5810	broad.mit.edu	37	chr5	34911771	34911771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaataattttattaataaCattggtgctgcagaaatcaa	6	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34911771	A	A	34911771	3	1	61	1	0	0	0	0	1	0	0	0	13086	478	17	3	406	3	RAD1	5	34911771	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	115670	34911771	146003489	2241	70486											
AGXT2	64902	broad.mit.edu	37	chr5	35013906	35013906	+	Intron	DEL	G	-	-													tcaaaaaaaaaaaaaaaaaaGggctggctttcttccaactg					rs79432192		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35013906	-	-	35013906	6	5	61	0	1	1	0	1	0	0	0	0	405	1015	35	0		0	AGXT2	5	35013906	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	102135	35013906	145901354	2242	70487											
PRLR	5618	broad.mit.edu	37	chr5	35086169	35086169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaatgtgggcatggacCttagactcccctttccccgg	12	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35086169	A	A	35086169	1	1	61	0	1	0	0	0	0	0	0	0	12637	696	24	2		2	PRLR	5	35086169	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	72263	35086169	145829091	2243	70488											
SPEF2	79925	broad.mit.edu	37	chr5	35763829	35763829	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgctcgttatattttcTgttagtaatacacattcatt	6	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35763829	C	C	35763829	1	2	61	0	1	0	0	0	0	0	0	0	15153	1595	55	5		5	SPEF2	5	35763829	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	677660	35763829	145151431	2244	70489											
SPEF2	79925	broad.mit.edu	37	chr5	35793528	35793528	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgatgttacattgacaGgtctcaggccagtgcattgc	10	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35793528	C	C	35793528	1	2	61	0	1	0	0	0	0	0	0	0	15153	1015	35	4		4	SPEF2	5	35793528	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29699	35793528	145121732	2245	70490											
UGT3A2	167127	broad.mit.edu	37	chr5	36035779	36035779	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcgcccaccaaacagaccCcgccaaggctgcacctggcc	8	20	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36035779	T	T	36035779	1	4	61	0	1	0	0	0	0	0	0	0	17090	638	22	4		4	UGT3A2	5	36035779	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	242251	36035779	144879481	2246	70491											
UGT3A2	167127	broad.mit.edu	37	chr5	36055821	36055821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttatccccaactccatGtgcctcctctctaccttgct	3	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36055821	T	T	36055821	1	4	61	0	1	0	0	0	0	0	0	0	17090	1392	48	3		3	UGT3A2	5	36055821	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20042	36055821	144859439	2247	70492											
SKP2	6502	broad.mit.edu	37	chr5	36153042	36153042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaactgctctcaaacctgGgccacccggagagcccccca	10	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36153042	T	T	36153042	3	4	61	1	0	0	0	0	1	0	0	0	14475	1232	43	2	184	2	SKP2	5	36153042	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	97221	36153042	144762218	2248	70493											
NIPBL	25836	broad.mit.edu	37	chr5	36975797	36975797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctagtattactatattGtcacttattaatatttctat	2	5	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36975797	T	T	36975797	1	4	61	0	1	0	0	0	0	0	0	0	10523	1392	48	3		3	NIPBL	5	36975797	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	822755	36975797	143939463	2249	70494											
C5orf42	65250	broad.mit.edu	37	chr5	37210301	37210301	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaccaagagattgaaaCaaaagagatttatgctcaaa	7	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37210301	T	T	37210301	1	4	61	0	1	0	0	0	0	0	0	0	2324	493	17	4		4	C5orf42	5	37210301	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	234504	37210301	143704959	2250	70495											
EGFLAM	133584	broad.mit.edu	37	chr5	38337593	38337593	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgggatgtgtggagcctCtaacacaatctcttttgttt	11	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38337593	T	T	38337593	1	4	61	0	1	0	0	0	0	0	0	0	5006	928	32	4		4	EGFLAM	5	38337593	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1127292	38337593	142577667	2251	70496											
EGFLAM	133584	broad.mit.edu	37	chr5	38406921	38406921	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgaacccctttccttctcTggctttaggttaaaccactt	5	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38406921	A	A	38406921	1	1	61	0	1	0	0	0	0	0	0	0	5006	1595	55	5		5	EGFLAM	5	38406921	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	69328	38406921	142508339	2252	70497											
FYB	2533	broad.mit.edu	37	chr5	39135002	39135002	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccattttccttctgggttgtCtgtgatgcggatgatttcaa	10	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39135002	A	A	39135002	3	1	61	1	0	0	0	0	1	0	0	0	6184	913	32	3	907	3	FYB	5	39135002	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	728081	39135002	141780258	2253	70498											
FYB	2533	broad.mit.edu	37	chr5	39170245	39170245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgctgatgaagtataaGtagctacaggtcaagtctga	11	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39170245	T	T	39170245	1	4	61	0	1	0	0	0	0	0	0	0	6184	1044	36	3		3	FYB	5	39170245	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	35243	39170245	141745015	2254	70499											
FYB	2533	broad.mit.edu	37	chr5	39217454	39217454	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaactgcgtaagggatctGtccaggttcacacagttggg	13	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39217454	A	A	39217454	1	1	61	0	1	0	0	0	0	0	0	0	6184	1392	48	4		4	FYB	5	39217454	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47209	39217454	141697806	2255	70500											
DAB2	1601	broad.mit.edu	37	chr5	39377118	39377118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgctctgaaaaggattccCcaaagggcttgttgttgacc	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39377118	A	A	39377118	3	1	61	1	0	0	0	0	1	0	0	0	4251	623	22	2	553	2	DAB2	5	39377118	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	159664	39377118	141538142	2256	70501											
DAB2	1601	broad.mit.edu	37	chr5	39383268	39383268	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaggcgttggtcgaggaaGagaacaggaggtgatgccgt	18	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39383268	T	T	39383268	3	4	61	1	0	0	0	0	1	0	0	0	4251	942	33	3	1539	3	DAB2	5	39383268	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6150	39383268	141531992	2257	70502											
PRKAA1	5562	broad.mit.edu	37	chr5	40798243	40798243	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcacccgcccgtcgtgttTctgcttctcggctgtcgcca	9	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40798243	C	C	40798243	3	2	61	1	0	0	0	0	1	0	0	0	12599	1792	62	5	1715	5	PRKAA1	5	40798243	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1414975	40798243	140117017	2258	70503											
HEATR7B2	133558	broad.mit.edu	37	chr5	41009274	41009274	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagtaaagttagggtatgaGagaagaaggaggtgtcatta	16	1	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41009274	A	A	41009274	1	1	61	0	1	0	0	0	0	0	0	0	7102	957	33	4		4	HEATR7B2	5	41009274	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	211031	41009274	139905986	2259	70504											
HEATR7B2	133558	broad.mit.edu	37	chr5	41033262	41033262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcatttgcagatccatgtCctaaagcaaaagcatttaca	5	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41033262	A	A	41033262	3	1	61	1	0	0	0	0	1	0	0	0	7102	869	30	3	2595	3	HEATR7B2	5	41033262	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	23988	41033262	139881998	2260	70505											
HEATR7B2	133558	broad.mit.edu	37	chr5	41048301	41048301	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaatagctatctaccTtgcatatcaagttcatcatt	4	8	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41048301	A	A	41048301	1	1	61	0	1	0	0	0	0	0	0	0	7102	1624	56	5		5	HEATR7B2	5	41048301	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15039	41048301	139866959	2261	70506											
HEATR7B2	133558	broad.mit.edu	37	chr5	41056060	41056060	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaagattatccaaggcacTcttcagttggtaatttgatt	8	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41056060	A	A	41056060	1	1	61	0	1	0	0	0	0	0	0	0	7102	1566	54	5		5	HEATR7B2	5	41056060	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	7759	41056060	139859200	2262	70507											
HEATR7B2	133558	broad.mit.edu	37	chr5	41064816	41064816	+	Intron	SNP	C	T	T													agatgtttctataattccgcCatctctaccccaccttaata							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41064816	T	T	41064816	1	4	61	0	1	0	0	0	0	0	0	0	7102	609	21	4		4	HEATR7B2	5	41064816	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8756	41064816	139850444	2263	70508	324	2									
HEATR7B2	133558	broad.mit.edu	37	chr5	41064821	41064821	+	Intron	SNP	C	A	A													tttctataattccgccatctCtaccccaccttaataccagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41064821	A	A	41064821	1	1	61	0	1	0	0	0	0	0	0	0	7102	928	32	3		3	HEATR7B2	5	41064821	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5	41064821	139850439	2264	70509	324	2									
HEATR7B2	133558	broad.mit.edu	37	chr5	41065357	41065357	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatgctatctcttctaccGtttgctcccatttagctttt	6	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41065357	A	A	41065357	1	1	61	0	1	0	0	0	0	0	0	0	7102	1160	40	4		4	HEATR7B2	5	41065357	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	536	41065357	139849903	2265	70510											
HEATR7B2	133558	broad.mit.edu	37	chr5	41071092	41071095	+	5'UTR	DEL	CTTG	-	-													aaatgaaagtgcctcctccaCttgattggcacaatggtctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41071095	-	-	41071092	6	5	61	0	1	1	0	1	0	0	0	0	7102	580	20	0		0	HEATR7B2	5	41071092	5'UTR	DEL	CTTG	TCGA-17-Z031-01A-01W-0746-08	5735	41071092	139844168	2266	70511											
C6	729	broad.mit.edu	37	chr5	41203063	41203063	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agagagacttcaaatttcatCcaaatttgtaagttcttact	5	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41203063	G	G	41203063	1	3	61	0	1	0	0	0	0	0	0	0	2338	870	30	4		4	C6	5	41203063	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	131971	41203063	139712197	2267	70512											
OXCT1	5019	broad.mit.edu	37	chr5	41794748	41794748	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcagctcattccatactgtCtgaaacatgaggggctctgt	9	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41794748	A	A	41794748	1	1	61	0	1	0	0	0	0	0	0	0	11423	928	32	3		3	OXCT1	5	41794748	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	591685	41794748	139120512	2268	70513											
OXCT1	5019	broad.mit.edu	37	chr5	41834602	41834603	+	Intron	INS	-	C	C													aacccacaaaaaaaaaaaaaINSaaaacaaaacagaacaggag					rs72746965	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41834603	C	C	41834602	6	5	61	0	1	1	1	0	0	0	0	0	11423	29	1	0		0	OXCT1	5	41834602	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	39854	41834602	139080658	2269	70514											
C5orf51	285636	broad.mit.edu	37	chr5	41904451	41904451	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggtcacgtgaccggggcGcacccgccgattgtggccat	14	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41904451	T	T	41904451	1	4	61	0	1	0	0	0	0	0	0	0	2331	1102	38	3		3	C5orf51	5	41904451	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69849	41904451	139010809	2270	70515											
GHR	2690	broad.mit.edu	37	chr5	42699437	42699438	+	Intron	INS	-	TCTT	TCTT													attagtgaggcaaagatgagINStcagggaacaacacagaaat					rs142537774	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCTT	42699438	TCTT	TCTT	42699437	6	5	61	0	1	1	1	0	0	0	0	0	6435	1044	36	0		0	GHR	5	42699437	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	794986	42699437	138215823	2271	70516											
HMGCS1	3157	broad.mit.edu	37	chr5	43298041	43298041	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccattaagtaagcgacagctCctacttctattttcaaattt	4	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43298041	G	G	43298041	1	3	61	0	1	0	0	0	0	0	0	0	7299	870	30	4		4	HMGCS1	5	43298041	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	598604	43298041	137617219	2272	70517											
FGF10	2255	broad.mit.edu	37	chr5	44388436	44388436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggataattggaaggaGgggagcatgcatttgttact	17	3	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44388436	T	T	44388436	1	4	61	0	1	0	0	0	0	0	0	0	5896	1015	35	2		2	FGF10	5	44388436	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1090395	44388436	136526824	2273	70518											
HCN1	348980	broad.mit.edu	37	chr5	45351989	45351989	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaggaaacaacaggtactgGagaggatgtggagaaatagg	15	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45351989	T	T	45351989	1	4	61	0	1	0	0	0	0	0	0	0	7062	1189	41	3		3	HCN1	5	45351989	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	963553	45351989	135563271	2274	70519											
HCN1	348980	broad.mit.edu	37	chr5	45353535	45353535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttacataatgtataagGcattttatttaggtgcacat	8	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45353535	T	T	45353535	1	4	61	0	1	0	0	0	0	0	0	0	7062	1218	42	3		3	HCN1	5	45353535	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1546	45353535	135561725	2275	70520											
HCN1	348980	broad.mit.edu	37	chr5	45472642	45472642	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagggaaggaggaagggaggGagggagggatggagggaggg	27	0	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45472642	T	T	45472642	1	4	61	0	1	0	0	0	0	0	0	0	7062	1189	41	3		3	HCN1	5	45472642	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	119107	45472642	135442618	2276	70521											
PARP8	79668	broad.mit.edu	37	chr5	50090165	50090165	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttattttctactttgcgcAggttggtaacaggcaacttc	8	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50090165	T	T	50090165	3	4	61	1	0	0	0	0	1	0	0	0	11559	202	7	5	904	5	PARP8	5	50090165	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4617523	50090165	130825095	2277	70522											
PARP8	79668	broad.mit.edu	37	chr5	50117170	50117170	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgttggccttcaaccccAgggtaagttgttatcatggc	11	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50117170	T	T	50117170	3	4	61	1	0	0	0	0	1	0	0	0	11559	179	7	5	1854	5	PARP8	5	50117170	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	27005	50117170	130798090	2278	70523											
ISL1	3670	broad.mit.edu	37	chr5	50679556	50679556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggctattttaccttgtGgggctcggtgtgctgttctt	13	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50679556	T	T	50679556	1	4	61	0	1	0	0	0	0	0	0	0	7926	1363	47	2		2	ISL1	5	50679556	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	562386	50679556	130235704	2279	70524											
ITGA1	3672	broad.mit.edu	37	chr5	52150063	52150063	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaccaatgggctcatgtgaTtgatgccctatttccaataa	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52150063	G	G	52150063	1	3	61	0	1	0	0	0	0	0	0	0	7942	1508	52	5		5	ITGA1	5	52150063	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1470507	52150063	128765197	2280	70525											
ITGA1	3672	broad.mit.edu	37	chr5	52216073	52216073	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattgattgccaaagagatTtttctataatgctaatttaa	6	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52216073	G	G	52216073	1	3	61	0	1	0	0	0	0	0	0	0	7942	1856	64	5		5	ITGA1	5	52216073	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	66010	52216073	128699187	2281	70526											
ITGA2	3673	broad.mit.edu	37	chr5	52347245	52347245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctctgttgaaggtggGgttaattcagtatgccaata	11	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52347245	T	T	52347245	3	4	61	1	0	0	0	0	1	0	0	0	7945	1232	43	2	661	2	ITGA2	5	52347245	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	131172	52347245	128568015	2282	70527											
SNX18	112574	broad.mit.edu	37	chr5	53834270	53834270	+	Intron	DEL	A	-	-													agctgtttaaaagatgtcatAtttttttttctgtttacttc					rs66803109		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53834270	-	-	53834270	6	5	61	0	1	1	0	1	0	0	0	0	15003	464	16	0		0	SNX18	5	53834270	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	1487025	53834270	127080990	2283	70528											
ESM1	11082	broad.mit.edu	37	chr5	54277989	54277989	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacagtctggggacaaaggaAaggttggagaggacgctgct	17	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54277989	T	T	54277989	1	4	61	0	1	0	0	0	0	0	0	0	5294	29	1	5		5	ESM1	5	54277989	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	443719	54277989	126637271	2284	70529											
CDC20B	166979	broad.mit.edu	37	chr5	54410353	54410353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttttctccctcagtgctcTtgcccctgtatcagtgtcct	7	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54410353	A	A	54410353	1	1	61	0	1	0	0	0	0	0	0	0	3090	1624	56	5		5	CDC20B	5	54410353	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	132364	54410353	126504907	2285	70530											
CDC20B	166979	broad.mit.edu	37	chr5	54415560	54415561	+	Intron	DNP	GG	CT	CT													aggataaaatctttcattcaGggcttttccccccaacaaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	54415561	CT	CT	54415560	1	2	61	0	1	0	0	0	0	0	0	0	3090	1015	35	4		4	CDC20B	5	54415560	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	5207	54415560	126499700	2286	70531											
CDC20B	166979	broad.mit.edu	37	chr5	54415663	54415663	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctggacacagtgggacaGgtccacacagtcacatcatt	10	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54415663	T	T	54415663	2	4	61	1	0	0	0	0	0	0	0	1	3090	987	35	2		2	CDC20B	5	54415663	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	103	54415663	126499597	2287	70532											
SLC38A9	153129	broad.mit.edu	37	chr5	54965466	54965466	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactgaaaacacagagtaaTagcagtaaaaaaatggagtt	8	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54965466	C	C	54965466	1	2	61	0	1	0	0	0	0	0	0	0	14725	1421	49	5		5	SLC38A9	5	54965466	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	549803	54965466	125949794	2288	70533											
DDX4	54514	broad.mit.edu	37	chr5	55086696	55086696	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tatataattctcaagataatCgcagggaatagtgttttcta	7	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55086696	G	G	55086696	1	3	61	0	1	0	0	0	0	0	0	0	4393	899	31	4		4	DDX4	5	55086696	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	121230	55086696	125828564	2289	70534											
RAB3C	115827	broad.mit.edu	37	chr5	58120738	58120738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattaactctaaatgtcagGcatttggacatcgtgttttt	7	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58120738	T	T	58120738	1	4	61	0	1	0	0	0	0	0	0	0	13041	1218	42	3		3	RAB3C	5	58120738	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3034042	58120738	122794522	2290	70535											
PDE4D	5144	broad.mit.edu	37	chr5	58476383	58476383	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttggcagaaatggtttcttCctagacacatgaagaataag	9	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58476383	G	G	58476383	1	3	61	0	1	0	0	0	0	0	0	0	11736	870	30	4		4	PDE4D	5	58476383	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	355645	58476383	122438877	2291	70536											
PDE4D	5144	broad.mit.edu	37	chr5	59756474	59756474	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcccttcctcagcaagccTgcagaggccaatgtctcctc	7	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59756474	C	C	59756474	1	2	61	0	1	0	0	0	0	0	0	0	11736	1595	55	5		5	PDE4D	5	59756474	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1280091	59756474	121158786	2292	70537											
FLJ37543	285668	broad.mit.edu	37	chr5	60972376	60972376	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccccacctgccaaccagGggcgggtgcacccaccctca	10	20	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60972376	T	T	60972376	1	4	61	0	1	0	0	0	0	0	0	0	5986	1247	43	2		2	FLJ37543	5	60972376	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1215902	60972376	119942884	2293	70538											
ERBB2IP	55914	broad.mit.edu	37	chr5	65279548	65279548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatccagccgagtatacatGtgtgcctccaggcgacccca	9	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65279548	A	A	65279548	1	1	61	0	1	0	0	0	0	0	0	0	5249	1392	48	4		4	ERBB2IP	5	65279548	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4307172	65279548	115635712	2294	70539											
ERBB2IP	55914	broad.mit.edu	37	chr5	65342115	65342115	+	Intron	DEL	A	-	-													caaattgcttacaaatttttAtctgaacttttaaaatagat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65342115	-	-	65342115	6	5	61	0	1	1	0	1	0	0	0	0	5249	464	16	0		0	ERBB2IP	5	65342115	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	62567	65342115	115573145	2295	70540											
MAST4	375449	broad.mit.edu	37	chr5	66266326	66266326	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtccgtggggtcttggcaCagctgagtctctgcagcgcc	15	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66266326	T	T	66266326	1	4	61	0	1	0	0	0	0	0	0	0	9419	493	17	4		4	MAST4	5	66266326	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	924211	66266326	114648934	2296	70541											
BDP1	55814	broad.mit.edu	37	chr5	70785278	70785278	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataatgatccagatgagtctAtgagttctagaatttcagac	8	6	3	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70785278	G	G	70785278	3	3	61	1	0	0	0	0	1	0	0	0	1400	449	16	5	1299	5	BDP1	5	70785278	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4518952	70785278	110129982	2297	70542											
BDP1	55814	broad.mit.edu	37	chr5	70797398	70797398	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaattcacagaaccacgtgGaaaaagataaaatgaataca	6	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70797398	T	T	70797398	4	4	61	1	0	0	0	0	0	1	0	0	1400	1175	41	3	2020	3	BDP1	5	70797398	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12120	70797398	110117862	2298	70543											
MCCC2	64087	broad.mit.edu	37	chr5	70908768	70908768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagtcaaggcagcagcgGggctgtgcttccaggggaca	16	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70908768	T	T	70908768	1	4	61	0	1	0	0	0	0	0	0	0	9468	1247	43	2		2	MCCC2	5	70908768	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	111370	70908768	110006492	2299	70544											
ANKRA2	57763	broad.mit.edu	37	chr5	72848696	72848696	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactagaacagataggtaatCaagattacagcacagtgact	8	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72848696	A	A	72848696	1	1	61	0	1	0	0	0	0	0	0	0	636	841	29	3		3	ANKRA2	5	72848696	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1939928	72848696	108066564	2300	70545											
ENC1	8507	broad.mit.edu	37	chr5	73931166	73931166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcttcagttcagcagagCcatggccaaacctggccacc	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73931166	A	A	73931166	3	1	61	1	0	0	0	0	1	0	0	0	5155	739	26	3	628	3	ENC1	5	73931166	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1082470	73931166	106984094	2301	70546											
FAM169A	26049	broad.mit.edu	37	chr5	74178344	74178344	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttgttactttcttgcccAggctggccttgaactgctgg	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74178344	T	T	74178344	1	4	61	0	1	0	0	0	0	0	0	0	5532	203	7	5		5	FAM169A	5	74178344	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	247178	74178344	106736916	2302	70547											
GCNT4	51301	broad.mit.edu	37	chr5	74325437	74325437	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctttcaaccataattgcAtctttgtggacaaccaaaga	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74325437	G	G	74325437	2	3	61	1	0	0	0	0	0	0	0	1	6365	214	8	5		5	GCNT4	5	74325437	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	147093	74325437	106589823	2303	70548											
SV2C	22987	broad.mit.edu	37	chr5	75490644	75490644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaggaaattttcctcatGcaaaatgctggaatgtattt	7	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75490644	T	T	75490644	1	4	61	0	1	0	0	0	0	0	0	0	15537	1334	46	3		3	SV2C	5	75490644	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1165207	75490644	105424616	2304	70549											
IQGAP2	10788	broad.mit.edu	37	chr5	75923342	75923342	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatgtaagccctcacctccTttgctcttgaaacttgcctt	5	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75923342	G	G	75923342	1	3	61	0	1	0	0	0	0	0	0	0	7885	1624	56	5		5	IQGAP2	5	75923342	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	432698	75923342	104991918	2305	70550											
IQGAP2	10788	broad.mit.edu	37	chr5	75932931	75932931	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctattacaacactgattcaaAagagagttcctgggtcacac	7	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75932931	C	C	75932931	3	2	61	1	0	0	0	0	1	0	0	0	7885	14	1	5	1915	5	IQGAP2	5	75932931	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9589	75932931	104982329	2306	70551											
CMYA5	202333	broad.mit.edu	37	chr5	79028116	79028116	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattcagttttacctgattcAgtccctgcaatcaagaaaga	6	10	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79028116	T	T	79028116	2	4	61	1	0	0	0	0	0	0	0	1	3622	175	7	5		5	CMYA5	5	79028116	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3095185	79028116	101887144	2307	70552											
CMYA5	202333	broad.mit.edu	37	chr5	79058792	79058792	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaaaattgaaaacagaAtcatgccgaagccgtggaag	11	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79058792	G	G	79058792	1	3	61	0	1	0	0	0	0	0	0	0	3622	116	4	5		5	CMYA5	5	79058792	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	30676	79058792	101856468	2308	70553											
SPZ1	84654	broad.mit.edu	37	chr5	79616340	79616340	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttttgaggaaaccaatatTactgaggatgtgtcagccca	9	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79616340	A	A	79616340	2	1	61	1	0	0	0	0	0	0	0	1	15245	1742	61	5		5	SPZ1	5	79616340	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	557548	79616340	101298920	2309	70554											
MSH3	4437	broad.mit.edu	37	chr5	80109363	80109363	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggatattatcaaaaacTtttctggtacaataagtgaa	7	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80109363	C	C	80109363	1	2	61	0	1	0	0	0	0	0	0	0	9965	1624	56	5		5	MSH3	5	80109363	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	493023	80109363	100805897	2310	70555											
RASGRF2	5924	broad.mit.edu	37	chr5	80338837	80338837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtgtagtacttgattGtctgggtcctgcattggggt	13	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80338837	T	T	80338837	1	4	61	0	1	0	0	0	0	0	0	0	13181	1392	48	3		3	RASGRF2	5	80338837	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	229474	80338837	100576423	2311	70556											
RASGRF2	5924	broad.mit.edu	37	chr5	80369088	80369088	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtgcaggattacatttgttCtcctcatgctgaaagtatga	9	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80369088	A	A	80369088	3	1	61	1	0	0	0	0	1	0	0	0	13181	913	32	3	722	3	RASGRF2	5	80369088	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30251	80369088	100546172	2312	70557											
RASGRF2	5924	broad.mit.edu	37	chr5	80409194	80409194	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtgtctgtgcttctttgGcaggtggagggtatacatgt	14	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80409194	T	T	80409194	1	4	61	0	1	0	0	0	0	0	0	0	13181	1218	42	3		3	RASGRF2	5	80409194	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40106	80409194	100506066	2313	70558											
ACOT12	134526	broad.mit.edu	37	chr5	80639814	80639814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggatatcagtggaacaaCgtggaagaactatttccata	9	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80639814	A	A	80639814	1	1	61	0	1	0	0	0	0	0	0	0	150	551	19	3		3	ACOT12	5	80639814	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	230620	80639814	100275446	2314	70559											
VCAN	1462	broad.mit.edu	37	chr5	82849088	82849088	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacttcagggacattgcacaGatactggcttgggtatccta	10	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82849088	A	A	82849088	1	1	61	0	1	0	0	0	0	0	0	0	17265	957	33	4		4	VCAN	5	82849088	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2209274	82849088	98066172	2315	70560											
EDIL3	10085	broad.mit.edu	37	chr5	83259139	83259139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatctttagctccttgtGtaatgatgccagtcactttg	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83259139	T	T	83259139	3	4	61	1	0	0	0	0	1	0	0	0	4955	1377	48	3	272	3	EDIL3	5	83259139	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	410051	83259139	97656121	2316	70561											
TMEM161B	153396	broad.mit.edu	37	chr5	87521702	87521702	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctataaaaatcagacaagTgacacaaaaaacaagttacc	4	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87521702	G	G	87521702	1	3	61	0	1	0	0	0	0	0	0	0	16200	1711	59	5		5	TMEM161B	5	87521702	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4262563	87521702	93393558	2317	70562											
GPR98	84059	broad.mit.edu	37	chr5	89953810	89953810	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggtcctatgagcggaaActgacgcttgaagaaattta	12	6	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89953810	C	C	89953810	3	2	61	1	0	0	0	0	1	0	0	0	6787	40	2	5	4549	5	GPR98	5	89953810	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2432108	89953810	90961450	2318	70563											
GPR98	84059	broad.mit.edu	37	chr5	90020682	90020682	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttttccgtatttcaaaGttttttggatgaatcagctt	8	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90020682	A	A	90020682	3	1	61	1	0	0	0	0	1	0	0	0	6787	1029	36	4	9964	4	GPR98	5	90020682	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66872	90020682	90894578	2319	70564											
GPR98	84059	broad.mit.edu	37	chr5	90055423	90055423	+	Intron	DEL	G	-	-													actgtaagttaaacatatcaGgggaaagccttgtttcaggc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90055423	-	-	90055423	6	5	61	0	1	1	0	1	0	0	0	0	6787	1015	35	0		0	GPR98	5	90055423	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	34741	90055423	90859837	2320	70565											
GPR98	84059	broad.mit.edu	37	chr5	90327058	90327058	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttccttcaaggggctcctCaggttgctgttgaatgtgtt	13	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90327058	T	T	90327058	1	4	61	0	1	0	0	0	0	0	0	0	6787	841	29	4		4	GPR98	5	90327058	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	271635	90327058	90588202	2321	70566											
ANKRD32	84250	broad.mit.edu	37	chr5	94031053	94031053	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggattgactttctaaatctGttcagtttgcattggtactt	8	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94031053	C	C	94031053	1	2	61	0	1	0	0	0	0	0	0	0	660	1392	48	4		4	ANKRD32	5	94031053	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3703995	94031053	86884207	2322	70567											
MCTP1	79772	broad.mit.edu	37	chr5	94046621	94046621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttaagaatgggacagtcCagttgaaagtactgaatgga	12	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94046621	A	A	94046621	3	1	61	1	0	0	0	0	1	0	0	0	9493	595	21	2	279	2	MCTP1	5	94046621	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15568	94046621	86868639	2323	70568											
MCTP1	79772	broad.mit.edu	37	chr5	94230546	94230546	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtcgacctggcacctagaGacaaatgttttgaatcagca	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94230546	A	A	94230546	1	1	61	0	1	0	0	0	0	0	0	0	9493	957	33	4		4	MCTP1	5	94230546	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	183925	94230546	86684714	2324	70569											
RIOK2	55781	broad.mit.edu	37	chr5	96503604	96503604	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtttcaatatttttatcatCtggacctaatggatgaagca	7	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96503604	A	A	96503604	3	1	61	1	0	0	0	0	1	0	0	0	13489	913	32	3	734	3	RIOK2	5	96503604	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2273058	96503604	84411656	2325	70570											
RIOK2	55781	broad.mit.edu	37	chr5	96513554	96513554	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccgatagccctggacagcTagacaaaaatcaaagcataa	7	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96513554	A	A	96513554	5	1	61	1	0	0	0	0	0	0	1	0	13489	1536	53	5	1514	5	RIOK2	5	96513554	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9950	96513554	84401706	2326	70571											
CHD1	1105	broad.mit.edu	37	chr5	98193850	98193850	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataaggagaaaaacatgcaTaagcaaaatttctaaagtga	8	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98193850	A	A	98193850	1	1	61	0	1	0	0	0	0	0	0	0	3354	1421	49	5		5	CHD1	5	98193850	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1680296	98193850	82721410	2327	70572											
SLCO4C1	353189	broad.mit.edu	37	chr5	101606329	101606329	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttagagagtaaacttaccTatatagagagaagacttgtg	10	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101606329	A	A	101606329	2	1	61	1	0	0	0	0	0	0	0	1	14844	1536	53	5		5	SLCO4C1	5	101606329	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3412479	101606329	79308931	2328	70573											
SLCO4C1	353189	broad.mit.edu	37	chr5	101606574	101606574	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatttaaatttctatcataTaaattacacttgcctaatat	1	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101606574	C	C	101606574	1	2	61	0	1	0	0	0	0	0	0	0	14844	1421	49	5		5	SLCO4C1	5	101606574	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	245	101606574	79308686	2329	70574											
SLCO6A1	133482	broad.mit.edu	37	chr5	101724433	101724433	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatttttgtcttgttatatAtccaacaacgtcctgtgtgt	6	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101724433	T	T	101724433	3	4	61	1	0	0	0	0	1	0	0	0	14846	449	16	5	191	5	SLCO6A1	5	101724433	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	117859	101724433	79190827	2330	70575											
SLCO6A1	133482	broad.mit.edu	37	chr5	101794272	101794272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaacctacatacacaccCtaataaattcaattaatcct	0	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101794272	A	A	101794272	1	1	61	0	1	0	0	0	0	0	0	0	14846	696	24	2		2	SLCO6A1	5	101794272	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	69839	101794272	79120988	2331	70576											
FBXL17	64839	broad.mit.edu	37	chr5	107276234	107276234	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatggaaatactttagtggGgaaggatatggtctcttctc	11	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107276234	A	A	107276234	1	1	61	0	1	0	0	0	0	0	0	0	5770	1247	43	4		4	FBXL17	5	107276234	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5481962	107276234	73639026	2332	70577											
FER	2241	broad.mit.edu	37	chr5	108290505	108290505	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtgcaattcccagaataGaagctcaagaactgttaaaa	8	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108290505	T	T	108290505	4	4	61	1	0	0	0	0	0	1	0	0	5870	943	33	3	1443	3	FER	5	108290505	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1014271	108290505	72624755	2333	70578											
FER	2241	broad.mit.edu	37	chr5	108521754	108521754	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggaattttttagctccatTatactgggaccactgtcata	7	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108521754	C	C	108521754	1	2	61	0	1	0	0	0	0	0	0	0	5870	1769	61	5		5	FER	5	108521754	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	231249	108521754	72393506	2334	70579											
CAMK4	814	broad.mit.edu	37	chr5	110733684	110733684	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatctatatgcgagtaacaGaatgcatatatcaggaagag	9	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110733684	C	C	110733684	1	2	61	0	1	0	0	0	0	0	0	0	2631	957	33	4		4	CAMK4	5	110733684	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2211930	110733684	70181576	2335	70580											
CAMK4	814	broad.mit.edu	37	chr5	110819971	110819971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaggtgcagatataaatgCtgaagaggcccccaaaatgg	11	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110819971	A	A	110819971	3	1	61	1	0	0	0	0	1	0	0	0	2631	797	28	3	1271	3	CAMK4	5	110819971	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	86287	110819971	70095289	2336	70581											
C5orf13	9315	broad.mit.edu	37	chr5	111312052	111312052	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caattttgatgtttgtttccTggaacattcctctttgccat	6	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111312052	A	A	111312052	1	1	61	0	1	0	0	0	0	0	0	0	2305	1595	55	5		5	C5orf13	5	111312052	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	492081	111312052	69603208	2337	70582											
EPB41L4A	64097	broad.mit.edu	37	chr5	111570404	111570404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacattctgatcaggccgGggaagctgaatagaaagatc	12	8	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111570404	T	T	111570404	2	4	61	1	0	0	0	0	0	0	0	1	5197	1219	43	2		2	EPB41L4A	5	111570404	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	258352	111570404	69344856	2338	70583											
EPB41L4A	64097	broad.mit.edu	37	chr5	111601918	111601918	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaggcaaatatgcttaAgtggcacctacactggatgg	11	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111601918	C	C	111601918	1	2	61	0	1	0	0	0	0	0	0	0	5197	87	3	5		5	EPB41L4A	5	111601918	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	31514	111601918	69313342	2339	70584											
REEP5	7905	broad.mit.edu	37	chr5	112228886	112228886	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggctgaggtgggtggatCacttgaggtcaggagtttga	19	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112228886	A	A	112228886	1	1	61	0	1	0	0	0	0	0	0	0	13316	841	29	3		3	REEP5	5	112228886	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	626968	112228886	68686374	2340	70585											
YTHDC2	64848	broad.mit.edu	37	chr5	112877995	112877995	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgatggccattgtggcCatcttatgttctttgcaagc	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112877995	T	T	112877995	1	4	61	0	1	0	0	0	0	0	0	0	17624	609	21	4		4	YTHDC2	5	112877995	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	649109	112877995	68037265	2341	70586											
KCNN2	3781	broad.mit.edu	37	chr5	113829163	113829163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaacactttggtggacttGgcaaaggtaagcctgaggtg	14	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113829163	T	T	113829163	3	4	61	1	0	0	0	0	1	0	0	0	8149	1339	47	2	1472	2	KCNN2	5	113829163	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	951168	113829163	67086097	2342	70587											
PGGT1B	5229	broad.mit.edu	37	chr5	114577198	114577198	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttattaaaatatccctaCatcccttctacttccttctg	1	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114577198	T	T	114577198	1	4	61	0	1	0	0	0	0	0	0	0	11884	493	17	4		4	PGGT1B	5	114577198	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	748035	114577198	66338062	2343	70588											
AP3S1	1176	broad.mit.edu	37	chr5	115205762	115205762	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatagacattatgcaacGttatattttgtcttctgtgt	6	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115205762	T	T	115205762	2	4	61	1	0	0	0	0	0	0	0	1	751	1132	40	3		3	AP3S1	5	115205762	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	628564	115205762	65709498	2344	70589											
AP3S1	1176	broad.mit.edu	37	chr5	115238581	115238581	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattcttttattccctttaGgttcacaatattcttgcaga	4	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115238581	T	T	115238581	5	4	61	1	0	0	0	0	0	0	1	0	751	1014	35	2	363	2	AP3S1	5	115238581	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32819	115238581	65676679	2345	70590											
AQPEP	206338	broad.mit.edu	37	chr5	115327725	115327725	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaatattcccttgaattTtttggtaattttatgatttc	4	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115327725	G	G	115327725	1	3	61	0	1	0	0	0	0	0	0	0	836	1856	64	5		5	AQPEP	5	115327725	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	89144	115327725	65587535	2346	70591											
AQPEP	206338	broad.mit.edu	37	chr5	115346608	115346608	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtaatttcattctttcTtatgtagtttttaaataaat	4	3	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115346608	G	G	115346608	1	3	61	0	1	0	0	0	0	0	0	0	836	1624	56	5		5	AQPEP	5	115346608	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18883	115346608	65568652	2347	70592											
AQPEP	206338	broad.mit.edu	37	chr5	115350326	115350326	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgagtgttttgctttcacTtggttaggcgctctctccta	9	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115350326	G	G	115350326	1	3	61	0	1	0	0	0	0	0	0	0	836	1624	56	5		5	AQPEP	5	115350326	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3718	115350326	65564934	2348	70593											
COMMD10	51397	broad.mit.edu	37	chr5	115617619	115617619	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactacttttttttggtcccAtgtgatctgggaaaatacct	7	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115617619	G	G	115617619	1	3	61	0	1	0	0	0	0	0	0	0	3747	232	8	5		5	COMMD10	5	115617619	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	267293	115617619	65297641	2349	70594											
SEMA6A	57556	broad.mit.edu	37	chr5	115814542	115814542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatatatgcatataaatAatgttctcaagtggttctgg	7	4	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115814542	G	G	115814542	1	3	61	0	1	0	0	0	0	0	0	0	14152	377	13	5		5	SEMA6A	5	115814542	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	196923	115814542	65100718	2350	70595											
DMXL1	1657	broad.mit.edu	37	chr5	118469760	118469760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagggttgacccagttgGgccattgtctttttctggag	15	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118469760	T	T	118469760	3	4	61	1	0	0	0	0	1	0	0	0	4634	1232	43	2	2187	2	DMXL1	5	118469760	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2655218	118469760	62445500	2351	70596											
HSD17B4	3295	broad.mit.edu	37	chr5	118811495	118811495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatatactttcctccttttaCcctatacaacattgattttt	1	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118811495	T	T	118811495	1	4	61	0	1	0	0	0	0	0	0	0	7453	522	18	4		4	HSD17B4	5	118811495	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	341735	118811495	62103765	2352	70597											
FAM170A	340069	broad.mit.edu	37	chr5	118968652	118968652	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattgggcatgaaaatatttGagtgtggggctctgtgggca	15	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118968652	C	C	118968652	1	2	61	0	1	0	0	0	0	0	0	0	5534	1305	45	4		4	FAM170A	5	118968652	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	157157	118968652	61946608	2353	70598											
FAM170A	340069	broad.mit.edu	37	chr5	118969680	118969680	+	Frame_Shift_Del	DEL	C	-	-													cagagaatacatcgagacagCccccagcctcaatcacccct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118969680	-	-	118969680	7	5	61	1	0	1	0	1	0	0	0	0	5534	738	26	0	247	0	FAM170A	5	118969680	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	1028	118969680	61945580	2354	70599											
FAM170A	340069	broad.mit.edu	37	chr5	118970330	118970330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaagagaaaccagaagCaaaggaggaggaggggcagc	19	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118970330	A	A	118970330	3	1	61	1	0	0	0	0	1	0	0	0	5534	710	25	3	897	3	FAM170A	5	118970330	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	650	118970330	61944930	2355	70600											
PRR16	51334	broad.mit.edu	37	chr5	120021572	120021572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttccatagcagatttcccCtagacaaaaataaattgttt	5	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120021572	T	T	120021572	1	4	61	0	1	0	0	0	0	0	0	0	12695	696	24	4		4	PRR16	5	120021572	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1051242	120021572	60893688	2356	70601											
PRR16	51334	broad.mit.edu	37	chr5	120022351	120022351	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caactgtgcctcctcccactGcaccaaaaccacagaagacg	6	17	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120022351	C	C	120022351	3	2	61	1	0	0	0	0	1	0	0	0	12695	1319	46	4	799	4	PRR16	5	120022351	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	779	120022351	60892909	2357	70602											
GRAMD3	65983	broad.mit.edu	37	chr5	125824489	125824489	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttttctcttttttcttacAgacaggcagcaccatctggc	6	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125824489	T	T	125824489	5	4	61	1	0	0	0	0	0	0	1	0	6817	202	7	5	1426	5	GRAMD3	5	125824489	Splice_Site	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5802138	125824489	55090771	2358	70603											
MEGF10	84466	broad.mit.edu	37	chr5	126770382	126770382	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcccttctgttttcagtctGctcccctggtttttatgggc	8	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126770382	C	C	126770382	3	2	61	1	0	0	0	0	1	0	0	0	9553	1319	46	4	1898	4	MEGF10	5	126770382	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	945893	126770382	54144878	2359	70604											
SLC12A2	6558	broad.mit.edu	37	chr5	127466944	127466944	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtttaccaaatctttattgAgggattatatgccgatcacc	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127466944	T	T	127466944	1	4	61	0	1	0	0	0	0	0	0	0	14496	319	11	5		5	SLC12A2	5	127466944	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	696562	127466944	53448316	2360	70605											
FBN2	2201	broad.mit.edu	37	chr5	127610317	127610317	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttacaggtaaaccccccCagggtgttgacacagaggaa	10	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127610317	A	A	127610317	2	1	61	1	0	0	0	0	0	0	0	1	5760	581	21	2		2	FBN2	5	127610317	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	143373	127610317	53304943	2361	70606											
FBN2	2201	broad.mit.edu	37	chr5	127610515	127610515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcttcgtagatttccatAggcatatggcaaacagtttc	9	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127610515	T	T	127610515	1	4	61	0	1	0	0	0	0	0	0	0	5760	435	15	5		5	FBN2	5	127610515	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	198	127610515	53304745	2362	70607											
FBN2	2201	broad.mit.edu	37	chr5	127614200	127614200	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacacacatcaaatataAatatcaaggtataaacattt	3	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127614200	G	G	127614200	1	3	61	0	1	0	0	0	0	0	0	0	5760	29	1	5		5	FBN2	5	127614200	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3685	127614200	53301060	2363	70608											
FBN2	2201	broad.mit.edu	37	chr5	127623237	127623237	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcaatagaatagtagaacTtacacatctggtacgcagaa	8	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127623237	G	G	127623237	1	3	61	0	1	0	0	0	0	0	0	0	5760	1624	56	5		5	FBN2	5	127623237	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9037	127623237	53292023	2364	70609											
FBN2	2201	broad.mit.edu	37	chr5	127625045	127625045	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcactttgggaggccgagGtgggtggatcacctgaggtc	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127625045	A	A	127625045	1	1	61	0	1	0	0	0	0	0	0	0	5760	1276	44	4		4	FBN2	5	127625045	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1808	127625045	53290215	2365	70610											
FBN2	2201	broad.mit.edu	37	chr5	127625533	127625533	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtaaaataatacgtgtgTattaaataagaatataggaa	7	1	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127625533	A	A	127625533	1	1	61	0	1	0	0	0	0	0	0	0	5760	1653	57	5		5	FBN2	5	127625533	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	488	127625533	53289727	2366	70611											
FBN2	2201	broad.mit.edu	37	chr5	127626604	127626604	+	Intron	DEL	G	-	-													aaaaagcaaacattacagatGgaattattttgtaacactgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127626604	-	-	127626604	6	5	61	0	1	1	0	1	0	0	0	0	5760	1363	47	0		0	FBN2	5	127626604	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	1071	127626604	53288656	2367	70612											
FBN2	2201	broad.mit.edu	37	chr5	127647128	127647128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcaatgtctacaaaaagGgagacagtgcacttaaaaca	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127647128	T	T	127647128	1	4	61	0	1	0	0	0	0	0	0	0	5760	1247	43	2		2	FBN2	5	127647128	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20524	127647128	53268132	2368	70613											
FBN2	2201	broad.mit.edu	37	chr5	127666391	127666391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacattcgtccagatctgCagaacacagcaataaagttc	7	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127666391	A	A	127666391	1	1	61	0	1	0	0	0	0	0	0	0	5760	725	25	3		3	FBN2	5	127666391	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19263	127666391	53248869	2369	70614											
FBN2	2201	broad.mit.edu	37	chr5	127667057	127667057	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatattccttgcagagggacGagtgcatggtaagacaccaa	12	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127667057	T	T	127667057	1	4	61	0	1	0	0	0	0	0	0	0	5760	1073	37	3		3	FBN2	5	127667057	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	666	127667057	53248203	2370	70615											
FBN2	2201	broad.mit.edu	37	chr5	127668325	127668325	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagattggaagaacatactAgtcatttttcatcatacagc	6	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127668325	T	T	127668325	1	4	61	0	1	0	0	0	0	0	0	0	5760	435	15	5		5	FBN2	5	127668325	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1268	127668325	53246935	2371	70616											
FBN2	2201	broad.mit.edu	37	chr5	127693085	127693085	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgctttcacattcatttaTatctacaatccagaaggaaa	5	8	3	1	rs148598779		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127693085	A	A	127693085	3	1	61	1	0	0	0	0	1	0	0	0	5760	1406	49	5	6365	5	FBN2	5	127693085	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	24760	127693085	53222175	2372	70617											
FBN2	2201	broad.mit.edu	37	chr5	127744489	127744489	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgatgctgcactcatcaAtgtctaatcaagggaagaag	10	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127744489	T	T	127744489	3	4	61	1	0	0	0	0	1	0	0	0	5760	101	4	5	8014	5	FBN2	5	127744489	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	51404	127744489	53170771	2373	70618											
FBN2	2201	broad.mit.edu	37	chr5	127762076	127762076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcaaaagttaaacttttGcctgtagacttaggacgata	8	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127762076	T	T	127762076	1	4	61	0	1	0	0	0	0	0	0	0	5760	1334	46	3		3	FBN2	5	127762076	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17587	127762076	53153184	2374	70619											
SLC27A6	28965	broad.mit.edu	37	chr5	128320926	128320926	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggtgtaatttcactcaaAgaaaaactgagcacctcacc	6	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128320926	C	C	128320926	3	2	61	1	0	0	0	0	1	0	0	0	14644	69	3	5	588	5	SLC27A6	5	128320926	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	558850	128320926	52594334	2375	70620											
SLC27A6	28965	broad.mit.edu	37	chr5	128351927	128351927	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccctgtctctactaaaaaTacaaaaacaaaattagacgg	4	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128351927	C	C	128351927	1	2	61	0	1	0	0	0	0	0	0	0	14644	1421	49	5		5	SLC27A6	5	128351927	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31001	128351927	52563333	2376	70621											
ADAMTS19	171019	broad.mit.edu	37	chr5	128920765	128920765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgggttgcaaagacagtGggaaaagcgtagcatttggg	16	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128920765	T	T	128920765	1	4	61	0	1	0	0	0	0	0	0	0	264	1363	47	2		2	ADAMTS19	5	128920765	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	568838	128920765	51994495	2377	70622											
ADAMTS19	171019	broad.mit.edu	37	chr5	129001264	129001264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaaaagccggcacataGctatttaggtaacctgtgtt	12	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129001264	T	T	129001264	3	4	61	1	0	0	0	0	1	0	0	0	264	971	34	3	2542	3	ADAMTS19	5	129001264	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	80499	129001264	51913996	2378	70623											
ADAMTS19	171019	broad.mit.edu	37	chr5	129030496	129030496	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagaaatgcaaatacttaAccaagccagagccacagatt	7	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129030496	C	C	129030496	3	2	61	1	0	0	0	0	1	0	0	0	264	43	2	5	2958	5	ADAMTS19	5	129030496	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29232	129030496	51884764	2379	70624											
CHSY3	337876	broad.mit.edu	37	chr5	129476986	129476986	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaccattcctatcaagcaGacatagacctcattacctac	3	16	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129476986	C	C	129476986	1	2	61	0	1	0	0	0	0	0	0	0	3444	957	33	4		4	CHSY3	5	129476986	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	446490	129476986	51438274	2380	70625											
P4HA2	8974	broad.mit.edu	37	chr5	131539500	131539500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgcatccgacgatttaCtcgggccacaacagggtcat	10	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131539500	A	A	131539500	3	1	61	1	0	0	0	0	1	0	0	0	11451	565	20	3	503	3	P4HA2	5	131539500	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2062514	131539500	49375760	2381	70626											
P4HA2	8974	broad.mit.edu	37	chr5	131553104	131553104	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggtcttgacctgtgacaAttttcctagtgagaattccc	8	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131553104	C	C	131553104	1	2	61	0	1	0	0	0	0	0	0	0	11451	116	4	5		5	P4HA2	5	131553104	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	13604	131553104	49362156	2382	70627											
PDLIM4	8572	broad.mit.edu	37	chr5	131606652	131606652	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccctcaggcaccgggacTgggccagaagatggcagacc	15	14	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131606652	C	C	131606652	2	2	61	1	0	0	0	0	0	0	0	1	11776	1567	55	5		5	PDLIM4	5	131606652	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	53548	131606652	49308608	2383	70628											
CATSPER3	347732	broad.mit.edu	37	chr5	134332105	134332105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttaccctatgccctccGccagctcatgggcaaacagt	8	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134332105	T	T	134332105	3	4	61	1	0	0	0	0	1	0	0	0	2715	1087	38	3	405	3	CATSPER3	5	134332105	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2725453	134332105	46583155	2384	70629											
LOC153328	153328	broad.mit.edu	37	chr5	135186227	135186227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgatgcctgcctgggcCcccacaggctggggaccagg	17	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135186227	A	A	135186227	1	1	61	0	1	0	0	0	0	0	0	0	8949	638	22	2		2	LOC153328	5	135186227	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	854122	135186227	45729033	2385	70630											
LECT2	3950	broad.mit.edu	37	chr5	135288647	135288647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatatattagcccatggcCctgccagtgctaaaaaggag	9	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135288647	A	A	135288647	3	1	61	1	0	0	0	0	1	0	0	0	8785	623	22	2	411	2	LECT2	5	135288647	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	102420	135288647	45626613	2386	70631											
TGFBI	7045	broad.mit.edu	37	chr5	135387900	135387900	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccctgccctgccccctaaAgtagcacttggataagcaaa	8	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135387900	C	C	135387900	1	2	61	0	1	0	0	0	0	0	0	0	15943	87	3	5		5	TGFBI	5	135387900	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	99253	135387900	45527360	2387	70632											
SPOCK1	6695	broad.mit.edu	37	chr5	136372212	136372212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaggaagctgagggcagGgatggcatgtccagcactga	15	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136372212	A	A	136372212	1	1	61	0	1	0	0	0	0	0	0	0	15197	1247	43	4		4	SPOCK1	5	136372212	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	984312	136372212	44543048	2388	70633											
SPOCK1	6695	broad.mit.edu	37	chr5	136476226	136476226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcagatctgccagctgCagaatgcctcccagccccca	7	19	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136476226	A	A	136476226	1	1	61	0	1	0	0	0	0	0	0	0	15197	725	25	3		3	SPOCK1	5	136476226	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104014	136476226	44439034	2389	70634											
WNT8A	7478	broad.mit.edu	37	chr5	137423338	137423339	+	Intron	INS	-	AA	AA													ctggtgacagagcgagtctcINSaaaaaaaaaaaaaaaaaaaa					rs66902804		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	137423339	AA	AA	137423338	6	5	61	0	1	1	1	0	0	0	0	0	17523	841	29	0		0	WNT8A	5	137423338	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	947112	137423338	43491922	2390	70635											
CTNNA1	1495	broad.mit.edu	37	chr5	138266022	138266022	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaaaatgagagaaatAgcccttcaggcgaaatgaaa	9	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138266022	T	T	138266022	1	4	61	0	1	0	0	0	0	0	0	0	4046	435	15	5		5	CTNNA1	5	138266022	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	842684	138266022	42649238	2391	70636											
SIL1	64374	broad.mit.edu	37	chr5	138282915	138282915	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagcacctggtactcagccTgcaggctggccagtgtcctg	12	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138282915	A	A	138282915	3	1	61	1	0	0	0	0	1	0	0	0	14434	1580	55	5	112	5	SIL1	5	138282915	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16893	138282915	42632345	2392	70637											
SLC23A1	9963	broad.mit.edu	37	chr5	138718386	138718386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcaggcagcccaagtggCttgtcagcaactgagagcgg	13	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138718386	A	A	138718386	1	1	61	0	1	0	0	0	0	0	0	0	14576	812	28	3		3	SLC23A1	5	138718386	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	435471	138718386	42196874	2393	70638											
NRG2	9542	broad.mit.edu	37	chr5	139248302	139248302	+	Intron	DEL	G	-	-													catgtgtgctgccctcacccGggggagggggtggatgaagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139248302	-	-	139248302	6	5	61	0	1	1	0	1	0	0	0	0	10743	1131	39	0		0	NRG2	5	139248302	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	529916	139248302	41666958	2394	70639											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139907771	139907771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttcccttagggGtggcacagaatcaacaagat	8	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139907771	T	T	139907771	3	4	61	1	0	0	0	0	1	0	0	0	629	1261	44	3	5354	3	ANKHD1-EIF4EBP3	5	139907771	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	659469	139907771	41007489	2395	70640											
PCDHA1	56147	broad.mit.edu	37	chr5	140166187	140166187	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggagcgcggagtgcagcatCcacctggagttgatcgccga	15	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140166187	G	G	140166187	3	3	61	1	0	0	0	0	1	0	0	0	11613	845	30	4	314	4	PCDHA1	5	140166187	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	258416	140166187	40749073	2396	70641											
PCDHA1	56147	broad.mit.edu	37	chr5	140167097	140167097	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagaattactactcgttgGtgttggacagcgccctggat	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140167097	A	A	140167097	3	1	61	1	0	0	0	0	1	0	0	0	11613	1261	44	4	1224	4	PCDHA1	5	140167097	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	910	140167097	40748163	2397	70642											
PCDHA5	56143	broad.mit.edu	37	chr5	140203776	140203776	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaatattaaatgtcacattCacccactttttttgtattta	2	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140203776	A	A	140203776	1	1	61	0	1	0	0	0	0	0	0	0	11621	826	29	3		3	PCDHA5	5	140203776	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36679	140203776	40711484	2398	70643											
PCDHA6	56142	broad.mit.edu	37	chr5	140208439	140208439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaagaatattcgaaaatGcagacaacggaacaacagtt	8	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140208439	T	T	140208439	3	4	61	1	0	0	0	0	1	0	0	0	11622	1319	46	3	765	3	PCDHA6	5	140208439	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4663	140208439	40706821	2399	70644											
PCDHA7	56141	broad.mit.edu	37	chr5	140214162	140214162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgccgcgcctgttccGggcggtgtgcaaattccgtg	16	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140214162	T	T	140214162	3	4	61	1	0	0	0	0	1	0	0	0	11623	1116	39	1	196	1	PCDHA7	5	140214162	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5723	140214162	40701098	2400	70645											
PCDHA8	56140	broad.mit.edu	37	chr5	140222248	140222248	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtggaggtggccgacGtgaacgacaatgctccggcg	16	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140222248	C	C	140222248	3	2	61	1	0	0	0	0	1	0	0	0	11624	1145	40	4	1344	4	PCDHA8	5	140222248	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8086	140222248	40693012	2401	70646											
PCDHA11	56138	broad.mit.edu	37	chr5	140250468	140250468	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccacgtggtggcgaaggtgCgcgcagtggatgcggactca	18	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140250468	G	G	140250468	3	3	61	1	0	0	0	0	1	0	0	0	11615	768	27	4	1782	4	PCDHA11	5	140250468	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28220	140250468	40664792	2402	70647											
PCDHA13	56136	broad.mit.edu	37	chr5	140263698	140263698	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaattgcagctggcggcGgtcggcgcgcgcatcccgtt	15	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140263698	T	T	140263698	2	4	61	1	0	0	0	0	0	0	0	1	11617	1103	39	1		1	PCDHA13	5	140263698	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13230	140263698	40651562	2403	70648											
PCDHAC2	56134	broad.mit.edu	37	chr5	140348981	140348981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacatcccccaatatcctGtgatttggctttattgagtc	6	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140348981	T	T	140348981	1	4	61	0	1	0	0	0	0	0	0	0	11627	1377	48	3		3	PCDHAC2	5	140348981	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	85283	140348981	40566279	2404	70649											
PCDHB3	56132	broad.mit.edu	37	chr5	140481763	140481763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccatcaacgcggacaaCggccacctgtttgccctcag	9	16	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481763	A	A	140481763	3	1	61	1	0	0	0	0	1	0	0	0	11637	535	19	3	1532	3	PCDHB3	5	140481763	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	132782	140481763	40433497	2405	70650											
PCDHB4	56131	broad.mit.edu	37	chr5	140502962	140502962	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacaccctgttcgtccgcgAgaacaacagccccgccctgc	8	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140502962	C	C	140502962	3	2	61	1	0	0	0	0	1	0	0	0	11638	304	11	5	1384	5	PCDHB4	5	140502962	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	21199	140502962	40412298	2406	70651											
PCDHB5	26167	broad.mit.edu	37	chr5	140515358	140515358	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcttactagaaaatccagtGcagttttttcaaactgatct	5	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140515358	C	C	140515358	2	2	61	1	0	0	0	0	0	0	0	1	11639	1306	46	4		4	PCDHB5	5	140515358	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12396	140515358	40399902	2407	70652											
PCDHB7	56129	broad.mit.edu	37	chr5	140552404	140552404	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaagtcattttgaaagactGatccaaagaagaatggaggc	11	5	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140552404	T	T	140552404	1	4	61	0	1	0	0	0	0	0	0	0	11641	1305	45	3		3	PCDHB7	5	140552404	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37046	140552404	40362856	2408	70653											
PCDHB7	56129	broad.mit.edu	37	chr5	140552680	140552680	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgatctacttctaaatgaGaaattggaccgagaggaact	11	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140552680	A	A	140552680	2	1	61	1	0	0	0	0	0	0	0	1	11641	933	33	4		4	PCDHB7	5	140552680	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	276	140552680	40362580	2409	70654											
PCDHB8	56128	broad.mit.edu	37	chr5	140559229	140559229	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcgcttcagaccgcggCtccccggctttgagcagcga	15	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559229	A	A	140559229	2	1	61	1	0	0	0	0	0	0	0	1	11642	784	28	3		3	PCDHB8	5	140559229	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6549	140559229	40356031	2410	70655											
PCDHB14	56122	broad.mit.edu	37	chr5	140603050	140603050	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacggctgagcttcagttTttccacaagagattgcctaa	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140603050	G	G	140603050	1	3	61	0	1	0	0	0	0	0	0	0	11633	1856	64	5		5	PCDHB14	5	140603050	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	43821	140603050	40312210	2411	70656											
PCDHB14	56122	broad.mit.edu	37	chr5	140605066	140605066	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctgcacgtgctcctggtGgacggcttctcccagcccta	11	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605066	T	T	140605066	2	4	61	1	0	0	0	0	0	0	0	1	11633	1335	47	2		2	PCDHB14	5	140605066	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2016	140605066	40310194	2412	70657											
PCDHB15	56121	broad.mit.edu	37	chr5	140626793	140626793	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgaggcgctggtgcgagtGctggtgctggacgccaacga	18	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140626793	C	C	140626793	2	2	61	1	0	0	0	0	0	0	0	1	11634	1306	46	4		4	PCDHB15	5	140626793	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21727	140626793	40288467	2413	70658											
TAF7	6879	broad.mit.edu	37	chr5	140698996	140698996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatggccctgcctgtgacCagacattcctggagaagaga	12	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140698996	A	A	140698996	3	1	61	1	0	0	0	0	1	0	0	0	15651	594	21	2	437	2	TAF7	5	140698996	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	72203	140698996	40216264	2414	70659											
TAF7	6879	broad.mit.edu	37	chr5	140699320	140699320	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagagatcaccatcaactgTggatacaagcatctgacaga	8	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140699320	C	C	140699320	3	2	61	1	0	0	0	0	1	0	0	0	15651	1696	59	5	761	5	TAF7	5	140699320	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	324	140699320	40215940	2415	70660											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719148	140719148	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcgctctctggaccgcgagGaagaggctgttcaccacctc	12	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140719148	C	C	140719148	3	2	61	1	0	0	0	0	1	0	0	0	11648	1175	41	4	612	4	PCDHGA2	5	140719148	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19828	140719148	40196112	2416	70661											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725438	140725438	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctgctcaaggccagcgAgccgggactcttctcggtgg	14	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140725438	G	G	140725438	3	3	61	1	0	0	0	0	1	0	0	0	11649	304	11	5	1840	5	PCDHGA3	5	140725438	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6290	140725438	40189822	2417	70662											
PCDHGB2	56103	broad.mit.edu	37	chr5	140739827	140739827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaattccagaggagctggCcaaaaactcggtcgtaggaa	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140739827	A	A	140739827	3	1	61	1	0	0	0	0	1	0	0	0	11657	739	26	3	127	3	PCDHGB2	5	140739827	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14389	140739827	40175433	2418	70663											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740768	140740768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttcagtatctactcccCtaccggaggattcgccacca	7	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140740768	A	A	140740768	3	1	61	1	0	0	0	0	1	0	0	0	11657	680	24	2	1068	2	PCDHGB2	5	140740768	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	941	140740768	40174492	2419	70664											
PCDHGA6	56109	broad.mit.edu	37	chr5	140754020	140754020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccgtggaagtggaaataGtggacattaatgacaataca	10	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140754020	T	T	140754020	3	4	61	1	0	0	0	0	1	0	0	0	11652	1029	36	3	372	3	PCDHGA6	5	140754020	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13252	140754020	40161240	2420	70665											
PCDHGA6	56109	broad.mit.edu	37	chr5	140755818	140755818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcgctggcacaagtcacGcctgctgcaggcttcgggag	15	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140755818	T	T	140755818	3	4	61	1	0	0	0	0	1	0	0	0	11652	1087	38	3	2170	3	PCDHGA6	5	140755818	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1798	140755818	40159442	2421	70666											
PCDHGB6	56100	broad.mit.edu	37	chr5	140787978	140787978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcaagctgcgagtgagcgCggagaagctgcacttcagcg	15	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140787978	A	A	140787978	3	1	61	1	0	0	0	0	1	0	0	0	11661	768	27	3	211	3	PCDHGB6	5	140787978	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32160	140787978	40127282	2422	70667											
PCDHGA12	26025	broad.mit.edu	37	chr5	140811613	140811613	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgccactgaccggggaacCccgcccctatccacggaaac	9	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140811613	T	T	140811613	2	4	61	1	0	0	0	0	0	0	0	1	11647	610	22	4		4	PCDHGA12	5	140811613	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	23635	140811613	40103647	2423	70668											
PCDHGA10	56106	broad.mit.edu	37	chr5	140864677	140864678	+	Intron	INS	-	G	G													tgtctccagctgctgtggctINSgtttggggcgggtcggcttc					rs145099347	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140864678	G	G	140864677	6	5	61	0	1	1	1	0	0	0	0	0	11645	1595	55	0		0	PCDHGA10	5	140864677	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	53064	140864677	40050583	2424	70669											
ARAP3	64411	broad.mit.edu	37	chr5	141044448	141044448	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accccctcatcacccccaccCcccacccccattggctcagt	3	25	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141044448	G	G	141044448	1	3	61	0	1	0	0	0	0	0	0	0	842	638	22	4		4	ARAP3	5	141044448	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	179771	141044448	39870812	2425	70670											
PCDH12	51294	broad.mit.edu	37	chr5	141325203	141325203	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcctcgtgcctgttgGgctcagctctggtgcctctg	14	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141325203	A	A	141325203	3	1	61	1	0	0	0	0	1	0	0	0	11604	1232	43	4	260	4	PCDH12	5	141325203	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	280755	141325203	39590057	2426	70671											
RNF14	9604	broad.mit.edu	37	chr5	141354434	141354434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctttctgcctccacttGtgctgaactttgaactgcca	7	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141354434	T	T	141354434	3	4	61	1	0	0	0	0	1	0	0	0	13554	1377	48	3	226	3	RNF14	5	141354434	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29231	141354434	39560826	2427	70672											
KCTD16	57528	broad.mit.edu	37	chr5	143838822	143838822	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattctccatcctcactcctAgaagtcactatcatctcttg	3	15	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143838822	G	G	143838822	1	3	61	0	1	0	0	0	0	0	0	0	8173	435	15	5		5	KCTD16	5	143838822	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2484388	143838822	37076438	2428	70673											
SH3RF2	153769	broad.mit.edu	37	chr5	145433857	145433857	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcacaccttggtctataaaGagtcattcaaaaaggggact	9	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145433857	T	T	145433857	1	4	61	0	1	0	0	0	0	0	0	0	14372	957	33	3		3	SH3RF2	5	145433857	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1595035	145433857	35481403	2429	70674											
SH3RF2	153769	broad.mit.edu	37	chr5	145446321	145446321	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatacttagaggaatttattCctttgtggaacattccagag	8	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145446321	T	T	145446321	1	4	61	0	1	0	0	0	0	0	0	0	14372	870	30	4		4	SH3RF2	5	145446321	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12464	145446321	35468939	2430	70675											
PPP2R2B	5521	broad.mit.edu	37	chr5	146006248	146006248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttggcctaaaatgtcccAaggccagagccatctataac	8	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146006248	T	T	146006248	1	4	61	0	1	0	0	0	0	0	0	0	12486	145	5	5		5	PPP2R2B	5	146006248	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	559927	146006248	34909012	2431	70676											
PPP2R2B	5521	broad.mit.edu	37	chr5	146137074	146137074	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggtggaaggcgagagatGgaagccccatttgaggtgac	17	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146137074	A	A	146137074	1	1	61	0	1	0	0	0	0	0	0	0	12486	1363	47	4		4	PPP2R2B	5	146137074	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	130826	146137074	34778186	2432	70677											
DPYSL3	1809	broad.mit.edu	37	chr5	146792222	146792222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgagcaatggcccccagCtctcccaggcaggtgaagat	11	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146792222	A	A	146792222	3	1	61	1	0	0	0	0	1	0	0	0	4788	796	28	3	1178	3	DPYSL3	5	146792222	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	655148	146792222	34123038	2433	70678											
JAKMIP2	9832	broad.mit.edu	37	chr5	147008224	147008224	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtattcacacacagtcatgTgcagagggaatgtccttcac	10	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147008224	C	C	147008224	1	2	61	0	1	0	0	0	0	0	0	0	8011	1711	59	5		5	JAKMIP2	5	147008224	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	216002	147008224	33907036	2434	70679											
JAKMIP2	9832	broad.mit.edu	37	chr5	147053079	147053079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggagtgtgtccctggGggaagggggcagggagaggt	21	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147053079	T	T	147053079	1	4	61	0	1	0	0	0	0	0	0	0	8011	1247	43	2		2	JAKMIP2	5	147053079	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44855	147053079	33862181	2435	70680											
SPINK5	11005	broad.mit.edu	37	chr5	147486521	147486521	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttttactttttactctacGttacatattcctcataatag	3	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147486521	C	C	147486521	1	2	61	0	1	0	0	0	0	0	0	0	15180	1160	40	4		4	SPINK5	5	147486521	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	433442	147486521	33428739	2436	70681											
SPINK5	11005	broad.mit.edu	37	chr5	147491469	147491469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccttcttgtgagtgggcGgcagccactgctgctactga	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147491469	T	T	147491469	1	4	61	0	1	0	0	0	0	0	0	0	15180	1131	39	1		1	SPINK5	5	147491469	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4948	147491469	33423791	2437	70682											
HTR4	3360	broad.mit.edu	37	chr5	147929925	147929925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagaaaggtaacttcacCatcagctgatgacacatata	6	10	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147929925	A	A	147929925	1	1	61	0	1	0	0	0	0	0	0	0	7519	609	21	2		2	HTR4	5	147929925	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	438456	147929925	32985335	2438	70683											
SH3TC2	79628	broad.mit.edu	37	chr5	148168655	148168655	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccttcattctctcagagcTggtgtccacacagatctcca	6	14	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148168655	A	A	148168655	1	1	61	0	1	0	0	0	0	0	0	0	14375	1595	55	5		5	SH3TC2	5	148168655	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	238730	148168655	32746605	2439	70684											
SH3TC2	79628	broad.mit.edu	37	chr5	148406949	148406949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgccctagcaccaaggcCtggctcaggtagtggatggc	14	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148406949	A	A	148406949	3	1	61	1	0	0	0	0	1	0	0	0	14375	680	24	2	1548	2	SH3TC2	5	148406949	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	238294	148406949	32508311	2440	70685											
SH3TC2	79628	broad.mit.edu	37	chr5	148407710	148407710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggaggaagcagagacGggcatgggcccaggtcatgt	17	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148407710	T	T	148407710	3	4	61	1	0	0	0	0	1	0	0	0	14375	1116	39	1	2309	1	SH3TC2	5	148407710	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	761	148407710	32507550	2441	70686											
AFAP1L1	134265	broad.mit.edu	37	chr5	148679973	148679973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccctctttccctgtgtatGcagaagggtcccccgactgg	10	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148679973	T	T	148679973	1	4	61	0	1	0	0	0	0	0	0	0	354	1334	46	3		3	AFAP1L1	5	148679973	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	272263	148679973	32235287	2442	70687											
PDE6A	5145	broad.mit.edu	37	chr5	149324063	149324063	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagatcaaagatgatttcGctctcctccatgctgctcgg	10	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149324063	A	A	149324063	2	1	61	1	0	0	0	0	0	0	0	1	11739	1078	38	4		4	PDE6A	5	149324063	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	644090	149324063	31591197	2443	70688											
CSF1R	1436	broad.mit.edu	37	chr5	149456850	149456850	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgcttacctaccacccggAagaacatggaggtggagtgc	13	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149456850	C	C	149456850	3	2	61	1	0	0	0	0	1	0	0	0	3966	246	9	5	2108	5	CSF1R	5	149456850	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	132787	149456850	31458410	2444	70689											
PDGFRB	5159	broad.mit.edu	37	chr5	149515317	149515317	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccaccggagctgaaccCgagcaggtcagaacgaaggt	12	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149515317	A	A	149515317	2	1	61	1	0	0	0	0	0	0	0	1	11756	639	23	1		1	PDGFRB	5	149515317	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	58467	149515317	31399943	2445	70690											
CDX1	1044	broad.mit.edu	37	chr5	149563052	149563052	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtgaagatctggttcCaaaaccggcgggcaaaggag	14	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149563052	T	T	149563052	4	4	61	1	0	0	0	0	0	1	0	0	3212	595	21	4	617	4	CDX1	5	149563052	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47735	149563052	31352208	2446	70691											
ARSI	340075	broad.mit.edu	37	chr5	149677043	149677043	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgcggaccacatcagGccgctggccagccaggtcct	14	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149677043	A	A	149677043	3	1	61	1	0	0	0	0	1	0	0	0	998	1203	42	4	269	4	ARSI	5	149677043	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	113991	149677043	31238217	2447	70692											
TCOF1	6949	broad.mit.edu	37	chr5	149743600	149743600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaagagctggaaggatgcgGgaaggtctgtctagtcaatt	14	5	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149743600	A	A	149743600	1	1	61	0	1	0	0	0	0	0	0	0	15830	1247	43	4		4	TCOF1	5	149743600	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66557	149743600	31171660	2448	70693											
SYNPO	11346	broad.mit.edu	37	chr5	150028819	150028819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgagaccttgtccacaGcccctctggcttcctgggtg	10	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150028819	T	T	150028819	3	4	61	1	0	0	0	0	1	0	0	0	15575	971	34	3	1720	3	SYNPO	5	150028819	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	285219	150028819	30886441	2449	70694											
GM2A	2760	broad.mit.edu	37	chr5	150632942	150632942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgagatatgggggtgGccactccgttctctagaatt	13	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150632942	T	T	150632942	1	4	61	0	1	0	0	0	0	0	0	0	6548	1218	42	3		3	GM2A	5	150632942	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	604123	150632942	30282318	2450	70695											
GM2A	2760	broad.mit.edu	37	chr5	150760219	150760219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcacatcgtcaacccagcCctagtcaaagatcagttggt	8	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150760219	A	A	150760219	1	1	61	0	1	0	0	0	0	0	0	0	6548	638	22	2		2	GM2A	5	150760219	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	127277	150760219	30155041	2451	70696											
GM2A	2760	broad.mit.edu	37	chr5	150760836	150760836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgccagccttctcctcaGcccctgagcccatgcacccc	7	21	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150760836	T	T	150760836	1	4	61	0	1	0	0	0	0	0	0	0	6548	986	34	3		3	GM2A	5	150760836	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	617	150760836	30154424	2452	70697											
SLC36A1	206358	broad.mit.edu	37	chr5	150847148	150847148	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatggctcactggccacaGattctaaaaggccttgttca	9	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150847148	A	A	150847148	1	1	61	0	1	0	0	0	0	0	0	0	14707	957	33	4		4	SLC36A1	5	150847148	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	86312	150847148	30068112	2453	70698											
FAT2	2196	broad.mit.edu	37	chr5	150931214	150931214	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaacctcagtgatttagGcagcatagcataagataggc	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150931214	A	A	150931214	1	1	61	0	1	0	0	0	0	0	0	0	5747	1218	42	4		4	FAT2	5	150931214	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	84066	150931214	29984046	2454	70699											
FAT2	2196	broad.mit.edu	37	chr5	150934205	150934205	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctggaggtggacttcagTgagggttccccattgtccag	13	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150934205	C	C	150934205	2	2	61	1	0	0	0	0	0	0	0	1	5747	1683	59	5		5	FAT2	5	150934205	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2991	150934205	29981055	2455	70700											
FAT2	2196	broad.mit.edu	37	chr5	150942866	150942866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagagatccctgttcacCcagctttttggatccttacc	7	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150942866	A	A	150942866	1	1	61	0	1	0	0	0	0	0	0	0	5747	638	22	2		2	FAT2	5	150942866	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8661	150942866	29972394	2456	70701											
SPARC	6678	broad.mit.edu	37	chr5	151046005	151046005	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttcttctcgaagtcccgGgccagcagctccacggggtg	13	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151046005	T	T	151046005	2	4	61	1	0	0	0	0	0	0	0	1	15111	1219	43	2		2	SPARC	5	151046005	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	103139	151046005	29869255	2457	70702											
SPARC	6678	broad.mit.edu	37	chr5	151049241	151049241	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacatttgcaaggcccgatGtagtccaggtggagcttgtg	13	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151049241	A	A	151049241	2	1	61	1	0	0	0	0	0	0	0	1	15111	1372	48	4		4	SPARC	5	151049241	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3236	151049241	29866019	2458	70703											
GLRA1	2741	broad.mit.edu	37	chr5	151230872	151230872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaataattcctttgctcccCatgttttaggcagagcaagg	9	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151230872	A	A	151230872	1	1	61	0	1	0	0	0	0	0	0	0	6518	609	21	2		2	GLRA1	5	151230872	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	181631	151230872	29684388	2459	70704											
GLRA1	2741	broad.mit.edu	37	chr5	151271938	151271938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattagcttatccaggaaatCcgagggtgacataggcttgg	12	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151271938	A	A	151271938	3	1	61	1	0	0	0	0	1	0	0	0	6518	855	30	3	1287	3	GLRA1	5	151271938	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41066	151271938	29643322	2460	70705											
NMUR2	56923	broad.mit.edu	37	chr5	151784152	151784152	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgggcagggagaagagcaCggagaagccccagacgatgc	17	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151784152	G	G	151784152	3	3	61	1	0	0	0	0	1	0	0	0	10602	536	19	4	740	4	NMUR2	5	151784152	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	512214	151784152	29131108	2461	70706											
NMUR2	56923	broad.mit.edu	37	chr5	151784488	151784488	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccaggcacaccaggacatTgccaatgacccccaccacaa	6	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151784488	A	A	151784488	3	1	61	1	0	0	0	0	1	0	0	0	10602	1812	63	5	1076	5	NMUR2	5	151784488	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	336	151784488	29130772	2462	70707											
GRIA1	2890	broad.mit.edu	37	chr5	152873380	152873380	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaccactcaaggctacagCtagtgagtttggcatgggga	12	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152873380	G	G	152873380	1	3	61	0	1	0	0	0	0	0	0	0	6833	812	28	4		4	GRIA1	5	152873380	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1088892	152873380	28041880	2463	70708											
GRIA1	2890	broad.mit.edu	37	chr5	153054124	153054124	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatgtgacaggtttccagcTggtgaactacacagacacta	9	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153054124	A	A	153054124	3	1	61	1	0	0	0	0	1	0	0	0	6833	1580	55	5	786	5	GRIA1	5	153054124	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	180744	153054124	27861136	2464	70709											
GRIA1	2890	broad.mit.edu	37	chr5	153174303	153174303	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgattccaaggtcagccCcagtaagaaaaaaaaaaacc	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153174303	G	G	153174303	1	3	61	0	1	0	0	0	0	0	0	0	6833	638	22	4		4	GRIA1	5	153174303	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	120179	153174303	27740957	2465	70710											
FAM114A2	10827	broad.mit.edu	37	chr5	153405995	153405995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcttcacaaaattctgCtagagaaaatgtttctttga	5	8	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153405995	A	A	153405995	3	1	61	1	0	0	0	0	1	0	0	0	5450	797	28	3	668	3	FAM114A2	5	153405995	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	231692	153405995	27509265	2466	70711											
FAM114A2	10827	broad.mit.edu	37	chr5	153413765	153413765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaagaagaattttaacCaagtcatatgcaatgcagat	9	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153413765	A	A	153413765	1	1	61	0	1	0	0	0	0	0	0	0	5450	609	21	2		2	FAM114A2	5	153413765	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7770	153413765	27501495	2467	70712											
FAM114A2	10827	broad.mit.edu	37	chr5	153414481	153414481	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgggggctgcttcagttagCagtggagtctcaatatcatc	12	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153414481	G	G	153414481	2	3	61	1	0	0	0	0	0	0	0	1	5450	697	25	4		4	FAM114A2	5	153414481	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	716	153414481	27500779	2468	70713											
MFAP3	4238	broad.mit.edu	37	chr5	153432624	153432624	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcttcacctcgggagacaTgagtgtctattacatgattg	9	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153432624	C	C	153432624	3	2	61	1	0	0	0	0	1	0	0	0	9608	1464	51	5	446	5	MFAP3	5	153432624	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18143	153432624	27482636	2469	70714											
LARP1	23367	broad.mit.edu	37	chr5	154185566	154185566	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcacacaacacgtctaccAtaagtatcgtaggcgctgcc	7	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154185566	G	G	154185566	3	3	61	1	0	0	0	0	1	0	0	0	8700	217	8	5	2499	5	LARP1	5	154185566	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	752942	154185566	26729694	2470	70715											
KIF4B	285643	broad.mit.edu	37	chr5	154393686	154393686	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggtcctggcctatgggcaGactggctctggaaaaaccta	12	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154393686	T	T	154393686	3	4	61	1	0	0	0	0	1	0	0	0	8374	933	33	3	269	3	KIF4B	5	154393686	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	208120	154393686	26521574	2471	70716											
SGCD	6444	broad.mit.edu	37	chr5	155978094	155978094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgttgccacactcgcCctgtcagctctttagccctt	7	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155978094	A	A	155978094	1	1	61	0	1	0	0	0	0	0	0	0	14314	638	22	2		2	SGCD	5	155978094	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1584408	155978094	24937166	2472	70717											
SGCD	6444	broad.mit.edu	37	chr5	156186448	156186448	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcataaaggccttttttGgctttagacactggctgcca	10	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156186448	T	T	156186448	1	4	61	0	1	0	0	0	0	0	0	0	14314	1363	47	2		2	SGCD	5	156186448	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	208354	156186448	24728812	2473	70718											
TIMD4	91937	broad.mit.edu	37	chr5	156353250	156353250	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactatttaagtgatatactGcaaatacttcacagattttt	4	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156353250	C	C	156353250	1	2	61	0	1	0	0	0	0	0	0	0	16026	1334	46	4		4	TIMD4	5	156353250	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	166802	156353250	24562010	2474	70719											
TIMD4	91937	broad.mit.edu	37	chr5	156378688	156378688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagatcgggtgtggtcaCgactgttgttggaagtgcag	17	5	1	1	rs55920848	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156378688	A	A	156378688	3	1	61	1	0	0	0	0	1	0	0	0	16026	536	19	3	650	3	TIMD4	5	156378688	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	25438	156378688	24536572	2475	70720											
FAM71B	153745	broad.mit.edu	37	chr5	156589529	156589529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgccactgatcatctccaGctcctggccaccctgggctt	9	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156589529	T	T	156589529	3	4	61	1	0	0	0	0	1	0	0	0	5659	962	34	3	74	3	FAM71B	5	156589529	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	210841	156589529	24325731	2476	70721											
ITK	3702	broad.mit.edu	37	chr5	156667246	156667246	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggacccgggccgcccagcagGaggtgagcagcaggtgagca	18	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156667246	T	T	156667246	1	4	61	0	1	0	0	0	0	0	0	0	7979	1189	41	3		3	ITK	5	156667246	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	77717	156667246	24248014	2477	70722											
ADAM19	8728	broad.mit.edu	37	chr5	156851969	156851969	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaacatccctgtctgacAgctttgaagagagcagtggt	10	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156851969	T	T	156851969	1	4	61	0	1	0	0	0	0	0	0	0	240	203	7	5		5	ADAM19	5	156851969	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	184723	156851969	24063291	2478	70723											
ADAM19	8728	broad.mit.edu	37	chr5	156889933	156889933	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgcaaagaaagcccctaActagcgtaagcactcactga	7	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156889933	C	C	156889933	1	2	61	0	1	0	0	0	0	0	0	0	240	58	2	5		5	ADAM19	5	156889933	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	37964	156889933	24025327	2479	70724											
NIPAL4	348938	broad.mit.edu	37	chr5	156900019	156900019	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgatggtacagcctgccctCccaatttcaaaaccacctgg	7	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156900019	A	A	156900019	1	1	61	0	1	0	0	0	0	0	0	0	10522	870	30	3		3	NIPAL4	5	156900019	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10086	156900019	24015241	2480	70725											
ADAM19	8728	broad.mit.edu	37	chr5	156917449	156917449	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccaacactccagctacCacaggacccacaccttccag	5	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156917449	A	A	156917449	2	1	61	1	0	0	0	0	0	0	0	1	240	581	21	2		2	ADAM19	5	156917449	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17430	156917449	23997811	2481	70726											
SOX30	11063	broad.mit.edu	37	chr5	157073743	157073743	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggatttgtagagatgataTtctgtgtggtaccagaaaat	11	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157073743	A	A	157073743	3	1	61	1	0	0	0	0	1	0	0	0	15066	1493	52	5	984	5	SOX30	5	157073743	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	156294	157073743	23841517	2482	70727											
SOX30	11063	broad.mit.edu	37	chr5	157077943	157077943	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaatcttgaaggcattcgTgtattttactgctatatgta	9	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157077943	C	C	157077943	1	2	61	0	1	0	0	0	0	0	0	0	15066	1711	59	5		5	SOX30	5	157077943	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4200	157077943	23837317	2483	70728											
EBF1	1879	broad.mit.edu	37	chr5	158522598	158522598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaattttgtgacatagagCcccccgtggcccaaaatcaa	8	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158522598	A	A	158522598	1	1	61	0	1	0	0	0	0	0	0	0	4920	754	26	3		3	EBF1	5	158522598	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1444655	158522598	22392662	2484	70729											
IL12B	3593	broad.mit.edu	37	chr5	158753577	158753577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcattgcattttcccagaGtgatggctttctctagagga	11	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158753577	T	T	158753577	1	4	61	0	1	0	0	0	0	0	0	0	7695	1044	36	3		3	IL12B	5	158753577	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	230979	158753577	22161683	2485	70730											
GABRB2	2561	broad.mit.edu	37	chr5	160721512	160721512	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actaggcaaggcactatgatCggcacttaagggatttatag	11	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160721512	A	A	160721512	1	1	61	0	1	0	0	0	0	0	0	0	6227	899	31	3		3	GABRB2	5	160721512	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1967935	160721512	20193748	2486	70731											
GABRA1	2554	broad.mit.edu	37	chr5	161302486	161302486	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgttaatatatttgctacAgttaataacattccacttgt	4	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161302486	G	G	161302486	1	3	61	0	1	0	0	0	0	0	0	0	6220	203	7	5		5	GABRA1	5	161302486	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	580974	161302486	19612774	2487	70732											
GABRA1	2554	broad.mit.edu	37	chr5	161302770	161302770	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaacagcaatataccacAtggactttccataagtagtg	6	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161302770	G	G	161302770	1	3	61	0	1	0	0	0	0	0	0	0	6220	232	8	5		5	GABRA1	5	161302770	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	284	161302770	19612490	2488	70733											
GABRA1	2554	broad.mit.edu	37	chr5	161317894	161317894	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatctttcttgtgtgtttTacttctcaggagaatatgtt	7	7	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161317894	C	C	161317894	1	2	61	0	1	0	0	0	0	0	0	0	6220	1769	61	5		5	GABRA1	5	161317894	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15124	161317894	19597366	2489	70734											
MAT2B	27430	broad.mit.edu	37	chr5	162945153	162945153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaagccctcaaaatataGcctttcacttacttttgatt	3	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162945153	T	T	162945153	1	4	61	0	1	0	0	0	0	0	0	0	9423	986	34	3		3	MAT2B	5	162945153	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1627259	162945153	17970107	2490	70735											
ODZ2	57451	broad.mit.edu	37	chr5	167066407	167066407	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagcctaaatcaggtcatgtCattccctgcttaaagaactc	6	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167066407	A	A	167066407	1	1	61	0	1	0	0	0	0	0	0	0	10930	841	29	3		3	ODZ2	5	167066407	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4121254	167066407	13848853	2491	70736											
ODZ2	57451	broad.mit.edu	37	chr5	167407296	167407296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgttgactgttctcaGctgtaaccttggacaaggta	11	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167407296	T	T	167407296	1	4	61	0	1	0	0	0	0	0	0	0	10930	986	34	3		3	ODZ2	5	167407296	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	340889	167407296	13507964	2492	70737											
ODZ2	57451	broad.mit.edu	37	chr5	167463264	167463264	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgccacaacagtctgcAgtgctgttgccggttgacag	12	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167463264	C	C	167463264	1	2	61	0	1	0	0	0	0	0	0	0	10930	203	7	5		5	ODZ2	5	167463264	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	55968	167463264	13451996	2493	70738											
ODZ2	57451	broad.mit.edu	37	chr5	167489293	167489293	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaccatgtttgatgtaatCaagcatttaaaaaaatatat	5	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167489293	T	T	167489293	1	4	61	0	1	0	0	0	0	0	0	0	10930	841	29	4		4	ODZ2	5	167489293	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26029	167489293	13425967	2494	70739											
ODZ2	57451	broad.mit.edu	37	chr5	167529121	167529121	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaattttgcttttgttgccCaggctggagtgtaatggtgc	13	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167529121	A	A	167529121	1	1	61	0	1	0	0	0	0	0	0	0	10930	609	21	2		2	ODZ2	5	167529121	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	39828	167529121	13386139	2495	70740											
ODZ2	57451	broad.mit.edu	37	chr5	167631330	167631330	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttggccaatacacatgtcTtccccagagggcttcagtaa	9	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167631330	G	G	167631330	1	3	61	0	1	0	0	0	0	0	0	0	10930	1624	56	5		5	ODZ2	5	167631330	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	102209	167631330	13283930	2496	70741											
ODZ2	57451	broad.mit.edu	37	chr5	167641925	167641925	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttagattctttccagttcaCtaaagtggaaagacactaga	8	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167641925	G	G	167641925	1	3	61	0	1	0	0	0	0	0	0	0	10930	580	20	4		4	ODZ2	5	167641925	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10595	167641925	13273335	2497	70742											
ODZ2	57451	broad.mit.edu	37	chr5	167643788	167643788	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggtattgcagtagacaAgaatgggctcatgtactttg	11	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167643788	C	C	167643788	3	2	61	1	0	0	0	0	1	0	0	0	10930	72	3	5	4153	5	ODZ2	5	167643788	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1863	167643788	13271472	2498	70743											
ODZ2	57451	broad.mit.edu	37	chr5	167671430	167671430	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgttttcctaggtccaTggaagaaatctcttgtccat	9	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167671430	C	C	167671430	2	2	61	1	0	0	0	0	0	0	0	1	10930	1461	51	5		5	ODZ2	5	167671430	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27642	167671430	13243830	2499	70744											
ODZ2	57451	broad.mit.edu	37	chr5	167674989	167674989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agattacctcactgtactacGacctccagggccacctcttt	6	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167674989	T	T	167674989	3	4	61	1	0	0	0	0	1	0	0	0	10930	1058	37	3	7124	3	ODZ2	5	167674989	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3559	167674989	13240271	2500	70745											
SLIT3	6586	broad.mit.edu	37	chr5	168112530	168112530	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagagctggtcaggagttaTctatagaactctctggatga	12	7	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168112530	C	C	168112530	1	2	61	0	1	0	0	0	0	0	0	0	14855	1450	50	5		5	SLIT3	5	168112530	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	437541	168112530	12802730	2501	70746											
DOCK2	1794	broad.mit.edu	37	chr5	169108836	169108836	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatcagcttgttccatgcaCatgaggaagcaactgataaa	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169108836	T	T	169108836	3	4	61	1	0	0	0	0	1	0	0	0	4727	478	17	4	585	4	DOCK2	5	169108836	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	996306	169108836	11806424	2502	70747											
DOCK2	1794	broad.mit.edu	37	chr5	169126557	169126557	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcctgaaccctgggatacTtagctttccttccagacaga	7	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169126557	G	G	169126557	1	3	61	0	1	0	0	0	0	0	0	0	4727	1624	56	5		5	DOCK2	5	169126557	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17721	169126557	11788703	2503	70748											
DOCK2	1794	broad.mit.edu	37	chr5	169135313	169135313	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacacatgtctagttcttaCcatgaaccaggcactgtttt	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169135313	T	T	169135313	1	4	61	0	1	0	0	0	0	0	0	0	4727	522	18	4		4	DOCK2	5	169135313	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8756	169135313	11779947	2504	70749											
DOCK2	1794	broad.mit.edu	37	chr5	169141280	169141280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtgtgtgtacatgtgtGtatgtgcttgcagacccaag	13	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169141280	T	T	169141280	1	4	61	0	1	0	0	0	0	0	0	0	4727	1392	48	3		3	DOCK2	5	169141280	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5967	169141280	11773980	2505	70750											
DOCK2	1794	broad.mit.edu	37	chr5	169141688	169141688	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaacaatggttatgctcAatctctggaaatagatgagc	9	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169141688	C	C	169141688	1	2	61	0	1	0	0	0	0	0	0	0	4727	145	5	5		5	DOCK2	5	169141688	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	408	169141688	11773572	2506	70751											
DOCK2	1794	broad.mit.edu	37	chr5	169157525	169157525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggatttaactaaaaacGcttgtatggcaggtagcacg	13	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169157525	T	T	169157525	1	4	61	0	1	0	0	0	0	0	0	0	4727	1102	38	3		3	DOCK2	5	169157525	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15837	169157525	11757735	2507	70752											
DOCK2	1794	broad.mit.edu	37	chr5	169172900	169172900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgagctgtgtaaaagcCggggtgggggtgagttagca	20	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169172900	A	A	169172900	1	1	61	0	1	0	0	0	0	0	0	0	4727	667	23	1		1	DOCK2	5	169172900	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15375	169172900	11742360	2508	70753											
DOCK2	1794	broad.mit.edu	37	chr5	169402164	169402164	+	Intron	SNP	C	A	A													taatcatttagcaagaaatgCttgctgaagagtgacaacca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169402164	A	A	169402164	1	1	61	0	1	0	0	0	0	0	0	0	4727	812	28	3		3	DOCK2	5	169402164	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	229264	169402164	11513096	2509	70754	325	2									
DOCK2	1794	broad.mit.edu	37	chr5	169402166	169402166	+	Intron	SNP	T	A	A													atcatttagcaagaaatgctTgctgaagagtgacaaccatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169402166	A	A	169402166	1	1	61	0	1	0	0	0	0	0	0	0	4727	1827	63	5		5	DOCK2	5	169402166	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2	169402166	11513094	2510	70755	325	2									
DOCK2	1794	broad.mit.edu	37	chr5	169504618	169504618	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctccactcagccccacaActctgccctgcctaggtgga	8	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169504618	C	C	169504618	1	2	61	0	1	0	0	0	0	0	0	0	4727	58	2	5		5	DOCK2	5	169504618	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	102452	169504618	11410642	2511	70756											
KCNIP1	30820	broad.mit.edu	37	chr5	169780877	169780877	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcctggctcccctccgcCaccatgagcggctgctccaa	10	18	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169780877	A	A	169780877	1	1	61	0	1	0	0	0	0	0	0	0	8109	609	21	2		2	KCNIP1	5	169780877	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	276259	169780877	11134383	2512	70757											
KCNMB1	3779	broad.mit.edu	37	chr5	169810651	169810651	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacacctgacagggataaAgggatgtgtccccatccctc	9	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169810651	C	C	169810651	1	2	61	0	1	0	0	0	0	0	0	0	8144	87	3	5		5	KCNMB1	5	169810651	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29774	169810651	11104609	2513	70758											
KCNIP1	30820	broad.mit.edu	37	chr5	170081054	170081054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctttccaacctctgcaccAgtgcccaagtctgtcactcc	6	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170081054	T	T	170081054	1	4	61	0	1	0	0	0	0	0	0	0	8109	203	7	5		5	KCNIP1	5	170081054	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	270403	170081054	10834206	2514	70759											
KCNIP1	30820	broad.mit.edu	37	chr5	170123279	170123279	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtatttgtttattgtgtcAttcctgctgaacagaggatg	10	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170123279	G	G	170123279	1	3	61	0	1	0	0	0	0	0	0	0	8109	232	8	5		5	KCNIP1	5	170123279	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	42225	170123279	10791981	2515	70760											
RANBP17	64901	broad.mit.edu	37	chr5	170668068	170668068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttggcgtcttcaagttGtatggggacaaccattttga	11	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170668068	T	T	170668068	3	4	61	1	0	0	0	0	1	0	0	0	13135	1368	48	3	2649	3	RANBP17	5	170668068	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	544789	170668068	10247192	2516	70761											
FGF18	8817	broad.mit.edu	37	chr5	170867409	170867409	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccagcagcaaggtctctGccccagtgagggaggagggc	15	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170867409	A	A	170867409	1	1	61	0	1	0	0	0	0	0	0	0	5903	1334	46	4		4	FGF18	5	170867409	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	199341	170867409	10047851	2517	70762											
UBTD2	92181	broad.mit.edu	37	chr5	171681485	171681485	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtttgattccagtatgttttCctaaatgtctttttagttca	6	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171681485	A	A	171681485	1	1	61	0	1	0	0	0	0	0	0	0	17034	870	30	3		3	UBTD2	5	171681485	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	814076	171681485	9233775	2518	70763											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171766420	171766420	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggatgtgtttggctggcatCatcggcaaaatcacgcccgg	14	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171766420	T	T	171766420	3	4	61	1	0	0	0	0	1	0	0	0	14370	826	29	4	1050	4	SH3PXD2B	5	171766420	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	84935	171766420	9148840	2519	70764											
ERGIC1	57222	broad.mit.edu	37	chr5	172341675	172341675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcccccatcctcccgcGtctctgggtttgtgactgtt	11	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172341675	T	T	172341675	1	4	61	0	1	0	0	0	0	0	0	0	5265	1160	40	3		3	ERGIC1	5	172341675	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	575255	172341675	8573585	2520	70765											
STC2	8614	broad.mit.edu	37	chr5	172744768	172744768	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgtgtgacatcccccctcTctaatggtaaatgttttgga	9	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172744768	C	C	172744768	1	2	61	0	1	0	0	0	0	0	0	0	15394	1566	54	5		5	STC2	5	172744768	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	403093	172744768	8170492	2521	70766											
HMP19	51617	broad.mit.edu	37	chr5	173496091	173496091	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctatggaggtgatcctGgtgctgtggagggtgctgat	19	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173496091	C	C	173496091	1	2	61	0	1	0	0	0	0	0	0	0	7312	1363	47	4		4	HMP19	5	173496091	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	751323	173496091	7419169	2522	70767											
HMP19	51617	broad.mit.edu	37	chr5	173531368	173531368	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggttgagtagtcccaggTcactatcaaattcagttaga	11	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173531368	G	G	173531368	1	3	61	0	1	0	0	0	0	0	0	0	7312	1682	58	5		5	HMP19	5	173531368	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	35277	173531368	7383892	2523	70768											
SFXN1	94081	broad.mit.edu	37	chr5	174943588	174943588	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaattggcattaaataaaGatttaagtggatctatcttt	7	3	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174943588	T	T	174943588	1	4	61	0	1	0	0	0	0	0	0	0	14307	957	33	3		3	SFXN1	5	174943588	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1412220	174943588	5971672	2524	70769											
HRH2	3274	broad.mit.edu	37	chr5	175111181	175111181	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccgcaactcccacaaaacTtctctgaggtccaacgcctc	5	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175111181	G	G	175111181	2	3	61	1	0	0	0	0	0	0	0	1	7423	1596	56	5		5	HRH2	5	175111181	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	167593	175111181	5804079	2525	70770											
CPLX2	10814	broad.mit.edu	37	chr5	175306055	175306055	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcgcatggaggcggagcGggagaaggtccggcagcaga	20	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175306055	A	A	175306055	3	1	61	1	0	0	0	0	1	0	0	0	3837	1116	39	4	182	4	CPLX2	5	175306055	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	194874	175306055	5609205	2526	70771											
C5orf25	375484	broad.mit.edu	37	chr5	175717056	175717056	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcttcttggcaagtctaCagctgtcttcagatgttagc	9	10	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175717056	T	T	175717056	4	4	61	1	0	0	0	0	0	1	0	0	2311	493	17	4		4	C5orf25	5	175717056	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	411001	175717056	5198204	2527	70772											
NOP16	51491	broad.mit.edu	37	chr5	175811206	175811206	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtccgggggacgcctcagCctggggcagctgtgatgtaa	17	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175811206	G	G	175811206	3	3	61	1	0	0	0	0	1	0	0	0	10632	754	26	4		4	NOP16	5	175811206	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	94150	175811206	5104054	2528	70773											
CDHR2	54825	broad.mit.edu	37	chr5	176002107	176002107	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccctagcactggggacaGcgagcatctcttccggatcc	10	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176002107	A	A	176002107	3	1	61	1	0	0	0	0	1	0	0	0	3149	971	34	4	544	4	CDHR2	5	176002107	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	190901	176002107	4913153	2529	70774											
CDHR2	54825	broad.mit.edu	37	chr5	176016154	176016154	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcgatcttcacctcctcCgaggccgacgtgttcgctgg	10	15	3	0	rs116761490	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176016154	A	A	176016154	2	1	61	1	0	0	0	0	0	0	0	1	3149	639	23	1		1	CDHR2	5	176016154	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14047	176016154	4899106	2530	70775											
GPRIN1	114787	broad.mit.edu	37	chr5	176026278	176026278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttcccaagatttcaggCtctgcctttcctgtaaacat	5	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176026278	A	A	176026278	3	1	61	1	0	0	0	0	1	0	0	0	6795	796	28	3	2472	3	GPRIN1	5	176026278	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10124	176026278	4888982	2531	70776											
UNC5A	90249	broad.mit.edu	37	chr5	176258747	176258747	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctgcttcctgactgaagtCctcatctgtctgctctcaac	7	15	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176258747	A	A	176258747	1	1	61	0	1	0	0	0	0	0	0	0	17117	870	30	3		3	UNC5A	5	176258747	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	232469	176258747	4656513	2532	70777											
ZNF346	23567	broad.mit.edu	37	chr5	176468840	176468840	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatggaatggagacattaaAgggggaaacgaagaagctag	14	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176468840	T	T	176468840	3	4	61	1	0	0	0	0	1	0	0	0	17986	72	3	5	351	5	ZNF346	5	176468840	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	210093	176468840	4446420	2533	70778											
DBN1	1627	broad.mit.edu	37	chr5	176893512	176893512	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggagggggagcctggtcaGtgagggtctgggtctagatg	22	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176893512	A	A	176893512	1	1	61	0	1	0	0	0	0	0	0	0	4285	1044	36	4		4	DBN1	5	176893512	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	424672	176893512	4021748	2534	70779											
DBN1	1627	broad.mit.edu	37	chr5	176894570	176894570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgttagagagccgctgcCcgatggcacccgcgtctatg	13	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176894570	A	A	176894570	3	1	61	1	0	0	0	0	1	0	0	0	4285	623	22	2	1600	2	DBN1	5	176894570	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1058	176894570	4020690	2535	70780											
DDX41	51428	broad.mit.edu	37	chr5	176938993	176938993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgccctggacttcgggcCccccgttaggcaccctcggt	11	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176938993	A	A	176938993	1	1	61	0	1	0	0	0	0	0	0	0	4394	638	22	2		2	DDX41	5	176938993	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44423	176938993	3976267	2536	70781											
DDX41	51428	broad.mit.edu	37	chr5	176940670	176940670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtgcagggtgccctggcCgggcgggggcggcaccttga	21	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176940670	A	A	176940670	1	1	61	0	1	0	0	0	0	0	0	0	4394	667	23	1		1	DDX41	5	176940670	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1677	176940670	3974590	2537	70782											
TMED9	54732	broad.mit.edu	37	chr5	177020500	177020500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacacaagcatatggcAacagctgctgagcagctttg	9	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177020500	G	G	177020500	1	3	61	0	1	0	0	0	0	0	0	0	16135	145	5	5		5	TMED9	5	177020500	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	79830	177020500	3894760	2538	70783											
FAM153A	285596	broad.mit.edu	37	chr5	177164146	177164146	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgctataagcacatgagcTccactgagtgaatccctcag	9	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177164146	A	A	177164146	1	1	61	0	1	0	0	0	0	0	0	0	5506	1566	54	5		5	FAM153A	5	177164146	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	143646	177164146	3751114	2539	70784											
HNRNPAB	3182	broad.mit.edu	37	chr5	177633023	177633023	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggagaaggtaagctgggtActggatttcagcagtctcag	15	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177633023	G	G	177633023	1	3	61	0	1	0	0	0	0	0	0	0	7328	406	14	5		5	HNRNPAB	5	177633023	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	468877	177633023	3282237	2540	70785											
ADAMTS2	9509	broad.mit.edu	37	chr5	178541398	178541398	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcccccacagggtgcagcTtgctggaggaggcatatgga	15	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178541398	G	G	178541398	1	3	61	0	1	0	0	0	0	0	0	0	265	1624	56	5		5	ADAMTS2	5	178541398	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	908375	178541398	2373862	2541	70786											
ADAMTS2	9509	broad.mit.edu	37	chr5	178554939	178554939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcatgtcacccaggtccCcagcttcgagaccccctcac	6	21	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178554939	A	A	178554939	1	1	61	0	1	0	0	0	0	0	0	0	265	638	22	2		2	ADAMTS2	5	178554939	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13541	178554939	2360321	2542	70787											
ADAMTS2	9509	broad.mit.edu	37	chr5	178585742	178585742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgcatgccggaaggccCaaagtcctgccgtgtgagga	13	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178585742	A	A	178585742	3	1	61	1	0	0	0	0	1	0	0	0	265	594	21	2	2664	2	ADAMTS2	5	178585742	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30803	178585742	2329518	2543	70788											
TBC1D9B	23061	broad.mit.edu	37	chr5	179320615	179320615	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtctgggctgtgtcacgCcctccatgtggagggaccag	14	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179320615	T	T	179320615	1	4	61	0	1	0	0	0	0	0	0	0	15750	754	26	4		4	TBC1D9B	5	179320615	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	734873	179320615	1594645	2544	70789											
OR2Y1	134083	broad.mit.edu	37	chr5	180166886	180166886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagagaaagaagtacataGgtgtgtgcagccgaaggtct	15	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180166886	T	T	180166886	3	4	61	1	0	0	0	0	1	0	0	0	11129	1000	35	2	766	2	OR2Y1	5	180166886	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	846271	180166886	748374	2545	70790											
BTNL3	10917	broad.mit.edu	37	chr5	180430646	180430646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatcccagctgttgtccCtctccttagcatgcaccttc	6	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180430646	A	A	180430646	1	1	61	0	1	0	0	0	0	0	0	0	1576	696	24	2		2	BTNL3	5	180430646	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	263760	180430646	484614	2546	70791											
PRPF4B	8899	broad.mit.edu	37	chr6	4056595	4056595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaagctttgcgattttgGgtcggcttcacatgttgcgg	12	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4056595	T	T	4056595	3	4	61	1	0	0	0	0	1	0	0	0	12679	1232	43	2	2553	2	PRPF4B	6	4056595	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08		4056595	167058472	2547	70792											
NRN1	51299	broad.mit.edu	37	chr6	5999554	5999554	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaacttcccggggtgtccCctccctaccttctcttcacc	6	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5999554	T	T	5999554	1	4	61	0	1	0	0	0	0	0	0	0	10753	638	22	4		4	NRN1	6	5999554	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1942959	5999554	165115513	2548	70793											
RREB1	6239	broad.mit.edu	37	chr6	7231129	7231129	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccctatgactgctccatgGagcccatcgacctgtccatc	7	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7231129	T	T	7231129	4	4	61	1	0	0	0	0	0	1	0	0	13790	1175	41	3	2823	3	RREB1	6	7231129	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1231575	7231129	163883938	2549	70794											
DSP	1832	broad.mit.edu	37	chr6	7556093	7556093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgcttctcccaaagccttGgccacacccgactgtcctct	6	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7556093	T	T	7556093	1	4	61	0	1	0	0	0	0	0	0	0	4821	1363	47	2		2	DSP	6	7556093	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	324964	7556093	163558974	2550	70795											
SNRNP48	154007	broad.mit.edu	37	chr6	7601747	7601747	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagacttggctgccaaAatcaatcaaggtttgagatg	10	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7601747	T	T	7601747	3	4	61	1	0	0	0	0	1	0	0	0	14971	11	1	5	603	5	SNRNP48	6	7601747	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	45654	7601747	163513320	2551	70796											
BMP6	654	broad.mit.edu	37	chr6	7791716	7791716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatgttagtgtttttcaGgcactgtccttggccctctc	8	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7791716	T	T	7791716	1	4	61	0	1	0	0	0	0	0	0	0	1470	1015	35	2		2	BMP6	6	7791716	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	189969	7791716	163323351	2552	70797											
TXNDC5	81567	broad.mit.edu	37	chr6	7905125	7905125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctcccctgctcccatcCctccagagtcactgccctgt	5	21	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7905125	A	A	7905125	1	1	61	0	1	0	0	0	0	0	0	0	16925	638	22	2		2	TXNDC5	6	7905125	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	113409	7905125	163209942	2553	70798											
SLC35B3	51000	broad.mit.edu	37	chr6	8435681	8435681	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgccatcacctcctcttcCtcctcctcctcgcccactcc	3	24	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8435681	A	A	8435681	1	1	61	1	0	0	0	0	0	0	0	0	14691	696	24	2		2	SLC35B3	6	8435681	Translation_Start_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	530556	8435681	162679386	2554	70799											
ERVFRDE1	405754	broad.mit.edu	37	chr6	11105476	11105476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagctttttccaataacGggaaatcaggatggcggtag	13	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11105476	T	T	11105476	3	4	61	1	0	0	0	0	1	0	0	0	5288	1116	39	1	1552	1	ERVFRDE1	6	11105476	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2669795	11105476	160009591	2555	70800											
NEDD9	4739	broad.mit.edu	37	chr6	11192453	11192453	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaagactacattttccCcttttgggtttgcctttctt	5	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11192453	T	T	11192453	1	4	61	0	1	0	0	0	0	0	0	0	10408	638	22	4		4	NEDD9	6	11192453	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	86977	11192453	159922614	2556	70801											
C6orf105	84830	broad.mit.edu	37	chr6	11759245	11759245	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgcagagaatatgattgAggccaatattcctttaggca	10	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11759245	T	T	11759245	1	4	61	0	1	0	0	0	0	0	0	0	2341	319	11	5		5	C6orf105	6	11759245	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	566792	11759245	159355822	2557	70802											
C6orf105	84830	broad.mit.edu	37	chr6	11779697	11779697	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcataggcatttctgtgccCtgggagggaagaagcagcac	14	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11779697	A	A	11779697	1	1	61	0	1	0	0	0	0	0	0	0	2341	696	24	2		2	C6orf105	6	11779697	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20452	11779697	159335370	2558	70803											
HIVEP1	3096	broad.mit.edu	37	chr6	12120865	12120865	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcaaggggcaatgcagtcAgcttctcatttgtatcatca	10	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12120865	T	T	12120865	2	4	61	1	0	0	0	0	0	0	0	1	7253	175	7	5		5	HIVEP1	6	12120865	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	341168	12120865	158994202	2559	70804											
PHACTR1	221692	broad.mit.edu	37	chr6	12718972	12718972	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaactctgtgtttggaacatCaaggatggattatcccaaaa	8	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12718972	T	T	12718972	1	4	61	0	1	0	0	0	0	0	0	0	11904	841	29	4		4	PHACTR1	6	12718972	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	598107	12718972	158396095	2560	70805											
PHACTR1	221692	broad.mit.edu	37	chr6	12803770	12803770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttacactatacttcttGcactcttagagtgtaaaatg	5	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12803770	T	T	12803770	1	4	61	0	1	0	0	0	0	0	0	0	11904	1334	46	3		3	PHACTR1	6	12803770	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	84798	12803770	158311297	2561	70806											
CCDC90A	63933	broad.mit.edu	37	chr6	13792272	13792272	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagaccacagcacgtcccctCtgctcaccatcctatagctc	5	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13792272	T	T	13792272	1	4	61	0	1	0	0	0	0	0	0	0	2896	928	32	4		4	CCDC90A	6	13792272	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	988502	13792272	157322795	2562	70807											
RNF182	221687	broad.mit.edu	37	chr6	13949788	13949788	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttctgcagtaaaacccAgagtgaactcttagataaaa	8	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13949788	T	T	13949788	1	4	61	0	1	0	0	0	0	0	0	0	13577	203	7	5		5	RNF182	6	13949788	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	157516	13949788	157165279	2563	70808											
RNF182	221687	broad.mit.edu	37	chr6	13977560	13977560	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcctttctgcaggtttgaGacgtgcctgccagatgatga	12	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13977560	T	T	13977560	3	4	61	1	0	0	0	0	1	0	0	0	13577	933	33	3	212	3	RNF182	6	13977560	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	27772	13977560	157137507	2564	70809											
CD83	9308	broad.mit.edu	37	chr6	14134055	14134055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaatccaagtatctcttGcagatagtgcgaatcattta	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14134055	T	T	14134055	1	4	61	0	1	0	0	0	0	0	0	0	3071	1334	46	3		3	CD83	6	14134055	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	156495	14134055	156981012	2565	70810											
JARID2	3720	broad.mit.edu	37	chr6	15319083	15319083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaggcgagaaagggggtGgtggttattgggaagagggc	23	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15319083	T	T	15319083	1	4	61	0	1	0	0	0	0	0	0	0	8015	1363	47	2		2	JARID2	6	15319083	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1185028	15319083	155795984	2566	70811											
JARID2	3720	broad.mit.edu	37	chr6	15487634	15487634	+	Frame_Shift_Del	DEL	A	-	-													aaaggagaagcacagcgatcAccgggctgacagccgccggg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15487634	-	-	15487634	7	5	61	1	0	1	0	1	0	0	0	0	8015	159	6	0	789	0	JARID2	6	15487634	Frame_Shift_Del	DEL	A	TCGA-17-Z031-01A-01W-0746-08	168551	15487634	155627433	2567	70812											
CDKAL1	54901	broad.mit.edu	37	chr6	20584823	20584823	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcacaattgagaactgaCtggtgagtccttggtgagtt	12	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20584823	T	T	20584823	1	4	61	0	1	0	0	0	0	0	0	0	3182	580	20	4		4	CDKAL1	6	20584823	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5097189	20584823	150530244	2568	70813											
CDKAL1	54901	broad.mit.edu	37	chr6	21038864	21038864	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacagctttgaatgcaGcccaaaacaaatttgtaaac	7	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21038864	A	A	21038864	1	1	61	0	1	0	0	0	0	0	0	0	3182	986	34	4		4	CDKAL1	6	21038864	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	454041	21038864	150076203	2569	70814											
PRL	5617	broad.mit.edu	37	chr6	22287778	22287778	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctgcagggatggaagtccCgaccagacagggtagatctc	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22287778	G	G	22287778	2	3	61	1	0	0	0	0	0	0	0	1	12634	639	23	4		4	PRL	6	22287778	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1248914	22287778	148827289	2570	70815											
FAM65B	9750	broad.mit.edu	37	chr6	24848321	24848321	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtacatggacattctcctctGaagggctgctgccttgttcc	10	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24848321	T	T	24848321	3	4	61	1	0	0	0	0	1	0	0	0	5651	1299	45	3	2255	3	FAM65B	6	24848321	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2560543	24848321	146266746	2571	70816											
LRRC16A	55604	broad.mit.edu	37	chr6	25610328	25610328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgcccttcttccacctGtcctgaaaaaagttccttca	5	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25610328	T	T	25610328	3	4	61	1	0	0	0	0	1	0	0	0	9058	1377	48	3	4040	3	LRRC16A	6	25610328	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	762007	25610328	145504739	2572	70817											
SCGN	10590	broad.mit.edu	37	chr6	25689550	25689550	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttgccctactttttaacTtatttagaaaacagacaagg	5	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25689550	A	A	25689550	1	1	61	0	1	0	0	0	0	0	0	0	14016	1624	56	5		5	SCGN	6	25689550	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	79222	25689550	145425517	2573	70818											
SLC17A4	10050	broad.mit.edu	37	chr6	25778297	25778297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaacctatagaggcatgGttttttcacatatgcacggc	9	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25778297	T	T	25778297	1	4	61	0	1	0	0	0	0	0	0	0	14532	1276	44	3		3	SLC17A4	6	25778297	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	88747	25778297	145336770	2574	70819											
SLC17A1	6568	broad.mit.edu	37	chr6	25830723	25830723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttaagaaaaagaacacCtgtttaatggaacagaataa	6	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25830723	A	A	25830723	1	1	61	0	1	0	0	0	0	0	0	0	14529	696	24	2		2	SLC17A1	6	25830723	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	52426	25830723	145284344	2575	70820											
SLC17A2	10246	broad.mit.edu	37	chr6	25917152	25917152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagatccacaccctgccCtagagacctctgcatgggcc	11	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25917152	A	A	25917152	1	1	61	0	1	0	0	0	0	0	0	0	14530	696	24	2		2	SLC17A2	6	25917152	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	86429	25917152	145197915	2576	70821											
SLC17A2	10246	broad.mit.edu	37	chr6	25918611	25918611	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttttatcatcttccatttGataaaggacattttctttca	3	7	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25918611	T	T	25918611	1	4	61	0	1	0	0	0	0	0	0	0	14530	1305	45	3		3	SLC17A2	6	25918611	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1459	25918611	145196456	2577	70822											
HIST1H3A	8350	broad.mit.edu	37	chr6	26020720	26020720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgctgtttttccgtcatGgctcgcactaagcaaactgc	9	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26020720	T	T	26020720	3	4	61	1	0	0	0	0	1	0	0	0	7222	1348	47	2	5	2	HIST1H3A	6	26020720	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	102109	26020720	145094347	2578	70823											
HIST1H3B	8358	broad.mit.edu	37	chr6	26031923	26031923	+	Frame_Shift_Del	DEL	G	-	-													cgagcgagctggatgtctttGggcataatagtcactcgctt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26031923	-	-	26031923	7	5	61	1	0	1	0	1	0	0	0	0	7223	1335	47	0	48	0	HIST1H3B	6	26031923	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	11203	26031923	145083144	2579	70824											
HIST1H2AC	8334	broad.mit.edu	37	chr6	26124324	26124324	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctatctgactagcatttGctaccgaccaatcaaaaagt	7	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26124324	T	T	26124324	1	4	61	0	1	0	0	0	0	0	0	0	7197	1334	46	3		3	HIST1H2AC	6	26124324	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	92401	26124324	144990743	2580	70825											
BTN3A1	11119	broad.mit.edu	37	chr6	26411915	26411915	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggggaagaaaagctcccaTgactaggagaatttggggta	14	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26411915	C	C	26411915	1	2	61	0	1	0	0	0	0	0	0	0	1572	1479	51	5		5	BTN3A1	6	26411915	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	287591	26411915	144703152	2581	70826											
BTN3A3	10384	broad.mit.edu	37	chr6	26444084	26444084	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttaggattgtgttcccctCtaggttctctgtatctcgcc	9	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26444084	T	T	26444084	1	4	61	0	1	0	0	0	0	0	0	0	1574	928	32	4		4	BTN3A3	6	26444084	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32169	26444084	144670983	2582	70827											
HIST1H2BJ	8970	broad.mit.edu	37	chr6	27100573	27100573	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacgaaaaggaaaaacagcGtgagcagggtatgacaaggc	13	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27100573	A	A	27100573	1	1	61	1	0	0	0	0	0	0	0	0	7216	1160	40	4		4	HIST1H2BJ	6	27100573	Translation_Start_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	656489	27100573	144014494	2583	70828											
HIST1H3I	8354	broad.mit.edu	37	chr6	27840163	27840163	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccggtatttatagctgcCctcgcgttctgattggacag	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27840163	T	T	27840163	1	4	61	0	1	0	0	0	0	0	0	0	7230	638	22	4		4	HIST1H3I	6	27840163	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	739590	27840163	143274904	2584	70829											
NKAPL	222698	broad.mit.edu	37	chr6	28228315	28228316	+	Frame_Shift_Del	DEL	GA	-	-													taagattttagccagtttccGagagatggtgcacaaaaaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28228316	-	-	28228315	7	5	61	1	0	1	0	1	0	0	0	0	10535	1058	37	0	1168	0	NKAPL	6	28228315	Frame_Shift_Del	DEL	GA	TCGA-17-Z031-01A-01W-0746-08	388152	28228315	142886752	2585	70830											
OR2W1	26692	broad.mit.edu	37	chr6	29012534	29012534	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgataatcatctttagacatAgatgtgggttcatgactaca	8	6	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29012534	T	T	29012534	3	4	61	1	0	0	0	0	1	0	0	0	11126	420	15	5	547	5	OR2W1	6	29012534	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	784219	29012534	142102533	2586	70831											
OR2B3	442184	broad.mit.edu	37	chr6	29054325	29054325	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcccaaatgctttttgcCgtccttctgctgacctgatt	7	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29054325	A	A	29054325	3	1	61	1	0	0	0	0	1	0	0	0	11084	652	23	1	244	1	OR2B3	6	29054325	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41791	29054325	142060742	2587	70832											
OR2J3	442186	broad.mit.edu	37	chr6	29080006	29080006	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttctcgcactgggaaccacAgagtgtgtcctactggtggt	13	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29080006	T	T	29080006	2	4	61	1	0	0	0	0	0	0	0	1	11098	175	7	5		5	OR2J3	6	29080006	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	25681	29080006	142035061	2588	70833											
MAS1L	116511	broad.mit.edu	37	chr6	29454895	29454895	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatctgcaccaccgcatagAccctggtggccttttgctgc	10	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29454895	C	C	29454895	3	2	61	1	0	0	0	0	1	0	0	0	9413	275	10	5	353	5	MAS1L	6	29454895	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	374889	29454895	141660172	2589	70834											
MAS1L	116511	broad.mit.edu	37	chr6	29455665	29455665	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctggctgaaccagcaaatTttcccccagaccatggggtg	10	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29455665	G	G	29455665	3	3	61	1	0	0	0	0	1	0	0	0	9413	1838	64	5	1123	5	MAS1L	6	29455665	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	770	29455665	141659402	2590	70835											
GABBR1	2550	broad.mit.edu	37	chr6	29541493	29541493	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccactagacaatgtttgatCagaaggaacaggggatgaga	12	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29541493	G	G	29541493	1	3	61	0	1	0	0	0	0	0	0	0	6215	841	29	4		4	GABBR1	6	29541493	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85828	29541493	141573574	2591	70836											
GABBR1	2550	broad.mit.edu	37	chr6	29599210	29599210	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatatctgtccaggagccGttggccaggcacttgcggac	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599210	A	A	29599210	2	1	61	1	0	0	0	0	0	0	0	1	6215	1136	40	4		4	GABBR1	6	29599210	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	57717	29599210	141515857	2592	70837											
ZFP57	346171	broad.mit.edu	37	chr6	29643738	29643738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttagattcttaaaggtttcCgacataacatcctggtaaag	8	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29643738	T	T	29643738	2	4	61	1	0	0	0	0	0	0	0	1	17777	639	23	4		4	ZFP57	6	29643738	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44528	29643738	141471329	2593	70838											
TRIM31	11074	broad.mit.edu	37	chr6	30071127	30071127	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattcgtccattccttctcCaactctcttcaccaccaccc	2	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30071127	T	T	30071127	1	4	61	0	1	0	0	0	0	0	0	0	16629	609	21	4		4	TRIM31	6	30071127	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	427389	30071127	141043940	2594	70839											
TRIM40	135644	broad.mit.edu	37	chr6	30115104	30115104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgatatgtggtgacttGtggtagatgtggcttgttcc	15	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30115104	T	T	30115104	1	4	61	0	1	0	0	0	0	0	0	0	16639	1392	48	3		3	TRIM40	6	30115104	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43977	30115104	140999963	2595	70840											
TRIM10	10107	broad.mit.edu	37	chr6	30128459	30128459	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggacggaagggttctttgcaGagtgggcaagtaggggactc	18	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30128459	T	T	30128459	2	4	61	1	0	0	0	0	0	0	0	1	16610	929	33	3		3	TRIM10	6	30128459	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13355	30128459	140986608	2596	70841											
ABCF1	23	broad.mit.edu	37	chr6	30553991	30553991	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaggaatcccaggaggcCcctgagctcctgaagcgccc	13	14	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30553991	T	T	30553991	2	4	61	1	0	0	0	0	0	0	0	1	65	610	22	4		4	ABCF1	6	30553991	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	425532	30553991	140561076	2597	70842											
MDC1	9656	broad.mit.edu	37	chr6	30679651	30679651	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaaggccagcacttacCaccatagttgtcttcagagt	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30679651	G	G	30679651	3	3	61	1	0	0	0	0	1	0	0	0	9496	608	21	4	4245	4	MDC1	6	30679651	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	125660	30679651	140435416	2598	70843											
PSORS1C2	170680	broad.mit.edu	37	chr6	31106829	31106829	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtactggcccccaaagctgGggtgggctgagtctgggtgc	17	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31106829	C	C	31106829	1	2	61	0	1	0	0	0	0	0	0	0	12821	1247	43	4		4	PSORS1C2	6	31106829	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	427178	31106829	140008238	2599	70844											
TCF19	6941	broad.mit.edu	37	chr6	31130328	31130328	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagttgggggcggggagcCctgtgcagctccttgttgct	17	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31130328	G	G	31130328	3	3	61	1	0	0	0	0	1	0	0	0	15811	623	22	4	882	4	TCF19	6	31130328	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	23499	31130328	139984739	2600	70845											
HLA-C	3107	broad.mit.edu	37	chr6	31238994	31238994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccgcggtgtccgcggCggtccaggagcgcaggtcct	17	14	0	1	rs41562518		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31238994	A	A	31238994	3	1	61	1	0	0	0	0	1	0	0	0	7264	768	27	3	649	3	HLA-C	6	31238994	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	108666	31238994	139876073	2601	70846											
HLA-B	3106	broad.mit.edu	37	chr6	31324088	31324088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccgccgtgtccgcggCggtccaggagcgcaggtcct	16	15	0	1	rs41540612		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324088	A	A	31324088	3	1	61	1	0	0	0	0	1	0	0	0	7263	768	27	3	633	3	HLA-B	6	31324088	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85094	31324088	139790979	2602	70847											
BAT1	7919	broad.mit.edu	37	chr6	31498927	31498927	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccaaataggttggtagccAcaagaattcgtcgttgaaaa	11	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31498927	G	G	31498927	3	3	61	1	0	0	0	0	1	0	0	0	1323	159	6	5	273	5	BAT1	6	31498927	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	174839	31498927	139616140	2603	70848											
BAT1	7919	broad.mit.edu	37	chr6	31499075	31499075	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcccatcttcagctcacctCtcctcctggggcatcccacg	6	19	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31499075	A	A	31499075	3	1	61	1	0	0	0	0	1	0	0	0	1323	912	32	3	327	3	BAT1	6	31499075	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	148	31499075	139615992	2604	70849											
LTB	4050	broad.mit.edu	37	chr6	31549182	31549182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaagaagaaactacactGcggggacgagcgtaagagtg	16	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31549182	T	T	31549182	1	4	61	0	1	0	0	0	0	0	0	0	9157	1334	46	3		3	LTB	6	31549182	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	50107	31549182	139565885	2605	70850											
BAT2	7916	broad.mit.edu	37	chr6	31600616	31600616	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggagcttctcaagtcagcGgccaggcatggaacggcaga	14	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31600616	A	A	31600616	3	1	61	1	0	0	0	0	1	0	0	0	1324	1116	39	4	4224	4	BAT2	6	31600616	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	51434	31600616	139514451	2606	70851											
LY6G6C	80740	broad.mit.edu	37	chr6	31686681	31686681	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcctggaaggaagtgggAagggacccagaaaaaggaga	17	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31686681	G	G	31686681	1	3	61	0	1	0	0	0	0	0	0	0	9182	261	9	5		5	LY6G6C	6	31686681	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	86065	31686681	139428386	2607	70852											
VARS	7407	broad.mit.edu	37	chr6	31759427	31759427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatggcgttggtgagtgcatGgcccaggtgcagggagcctg	19	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31759427	C	C	31759427	3	2	61	1	0	0	0	0	1	0	0	0	17250	1348	47	4	2826	4	VARS	6	31759427	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	72746	31759427	139355640	2608	70853											
CFB	629	broad.mit.edu	37	chr6	31910936	31910936	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagcccgccagaggcccGtgttgggaacctggacacag	16	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31910936	T	T	31910936	1	4	61	0	1	0	0	0	0	0	0	0	3308	1160	40	3		3	CFB	6	31910936	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	151509	31910936	139204131	2609	70854											
STK19	8859	broad.mit.edu	37	chr6	31948164	31948164	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttgtgtaaacattaatggAtgaggaggagagatggttct	13	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31948164	T	T	31948164	1	4	61	0	1	0	0	0	0	0	0	0	15410	348	12	5		5	STK19	6	31948164	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	37228	31948164	139166903	2610	70855											
TNXB	7148	broad.mit.edu	37	chr6	32052312	32052312	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgagcgctggggtccttccAcgggcaccacctggggctgc	15	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32052312	T	T	32052312	3	4	61	1	0	0	0	0	1	0	0	0	16469	159	6	5	11538	5	TNXB	6	32052312	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	104148	32052312	139062755	2611	70856											
TNXB	7148	broad.mit.edu	37	chr6	32065179	32065179	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaacaggtgcagcggctcaGatcaaacacaccatggagac	12	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32065179	T	T	32065179	3	4	61	1	0	0	0	0	1	0	0	0	16469	933	33	3	14430	3	TNXB	6	32065179	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12867	32065179	139049888	2612	70857											
FKBPL	63943	broad.mit.edu	37	chr6	32096983	32096983	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagtctcggccttgagtgAaggatgccagtgtgagcctg	16	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32096983	C	C	32096983	3	2	61	1	0	0	0	0	1	0	0	0	5973	246	9	5	478	5	FKBPL	6	32096983	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	31804	32096983	139018084	2613	70858											
PPT2	9374	broad.mit.edu	37	chr6	32123280	32123280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcagtcacttatatgatGtgtgaccttttggcacaggg	12	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32123280	T	T	32123280	1	4	61	0	1	0	0	0	0	0	0	0	12513	1392	48	3		3	PPT2	6	32123280	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26297	32123280	138991787	2614	70859											
COL11A2	1302	broad.mit.edu	37	chr6	33153417	33153417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggaggaaggtgtcctaGgagatgattgctgggggtgc	21	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33153417	T	T	33153417	1	4	61	0	1	0	0	0	0	0	0	0	3700	1015	35	2		2	COL11A2	6	33153417	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1030137	33153417	137961650	2615	70860											
SYNGAP1	8831	broad.mit.edu	37	chr6	33407668	33407668	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagtagagtgtatgtagtAgagtagagggatgtatgttg	15	0	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33407668	G	G	33407668	1	3	61	0	1	0	0	0	0	0	0	0	15566	435	15	5		5	SYNGAP1	6	33407668	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	254251	33407668	137707399	2616	70861											
GRM4	2914	broad.mit.edu	37	chr6	34003480	34003480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggtgccaaagaagatggGgatgaaggccagccagacga	16	8	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34003480	T	T	34003480	3	4	61	1	0	0	0	0	1	0	0	0	6865	1232	43	2	343	2	GRM4	6	34003480	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	595812	34003480	137111587	2617	70862											
GRM4	2914	broad.mit.edu	37	chr6	34026759	34026759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccagccttacctcgtacgGacatcctcttggggaggatc	11	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34026759	T	T	34026759	3	4	61	1	0	0	0	0	1	0	0	0	6865	1174	41	3	1747	3	GRM4	6	34026759	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23279	34026759	137088308	2618	70863											
GRM4	2914	broad.mit.edu	37	chr6	34029639	34029639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacacctgcatggctccCggtgcccaccctgctgccac	9	21	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34029639	A	A	34029639	1	1	61	0	1	0	0	0	0	0	0	0	6865	667	23	1		1	GRM4	6	34029639	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2880	34029639	137085428	2619	70864											
GRM4	2914	broad.mit.edu	37	chr6	34066173	34066173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccaggcctccagctctgCcccaccctccttgctgactc	6	22	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34066173	A	A	34066173	1	1	61	0	1	0	0	0	0	0	0	0	6865	754	26	3		3	GRM4	6	34066173	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36534	34066173	137048894	2620	70865											
GRM4	2914	broad.mit.edu	37	chr6	34100732	34100732	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgttgggggaagagcacctcAggggaccaaccaaggcactg	15	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34100732	T	T	34100732	1	4	61	0	1	0	0	0	0	0	0	0	6865	203	7	5		5	GRM4	6	34100732	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	34559	34100732	137014335	2621	70866											
GRM4	2914	broad.mit.edu	37	chr6	34100864	34100864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgggtgggccgccactgCcacagcggacctctgtgcca	14	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34100864	A	A	34100864	3	1	61	1	0	0	0	0	1	0	0	0	6865	739	26	3	2368	3	GRM4	6	34100864	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	132	34100864	137014203	2622	70867											
SCUBE3	222663	broad.mit.edu	37	chr6	35200627	35200627	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccctttcttctcttttagAaggaatgaattgcatgaaca	6	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35200627	G	G	35200627	3	3	61	1	0	0	0	0	1	0	0	0	14059	260	9	5	488	5	SCUBE3	6	35200627	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1099763	35200627	135914440	2623	70868											
SCUBE3	222663	broad.mit.edu	37	chr6	35201813	35201813	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatccctcttcctgaattcTtaggccttatctcacatatt	5	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35201813	G	G	35201813	1	3	61	0	1	0	0	0	0	0	0	0	14059	1624	56	5		5	SCUBE3	6	35201813	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1186	35201813	135913254	2624	70869											
FANCE	2178	broad.mit.edu	37	chr6	35423757	35423757	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccactgtctgaaagatgccAgagacagctccaaagtctat	8	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35423757	G	G	35423757	3	3	61	1	0	0	0	0	1	0	0	0	5723	188	7	5	488	5	FANCE	6	35423757	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	221944	35423757	135691310	2625	70870											
TEAD3	7005	broad.mit.edu	37	chr6	35444602	35444602	+	Intron	DEL	T	-	-													tagctgtgtattggctatggTttttttgtttttctgagatg					rs35575806		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35444602	-	-	35444602	6	5	61	0	1	1	0	1	0	0	0	0	15862	1740	60	0		0	TEAD3	6	35444602	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	20845	35444602	135670465	2626	70871											
TULP1	7287	broad.mit.edu	37	chr6	35477800	35477800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctatagtccccagggaGgctgaaagcttgacaggggc	14	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35477800	T	T	35477800	1	4	61	0	1	0	0	0	0	0	0	0	16899	1015	35	2		2	TULP1	6	35477800	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33198	35477800	135637267	2627	70872											
TULP1	7287	broad.mit.edu	37	chr6	35480576	35480576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaggtgccacgaactggGggccttccagacctgtcaga	13	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35480576	T	T	35480576	1	4	61	0	1	0	0	0	0	0	0	0	16899	1247	43	2		2	TULP1	6	35480576	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2776	35480576	135634491	2628	70873											
C6orf81	221481	broad.mit.edu	37	chr6	35705695	35705695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatggcgagaaggcttctcCgaaaaggcaaggcagccttg	13	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35705695	A	A	35705695	1	1	61	0	1	0	0	0	0	0	0	0	2396	667	23	1		1	C6orf81	6	35705695	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	225119	35705695	135409372	2629	70874											
MAPK13	5603	broad.mit.edu	37	chr6	36107183	36107183	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catggcaccgccggccagacActgcccaaggaccagtattt	10	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36107183	T	T	36107183	1	4	61	0	1	0	0	0	0	0	0	0	9367	174	6	5		5	MAPK13	6	36107183	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	401488	36107183	135007884	2630	70875											
CPNE5	57699	broad.mit.edu	37	chr6	36711568	36711568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagtgtcatggggcggGgtgagattaacggtggaccc	20	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36711568	T	T	36711568	1	4	61	0	1	0	0	0	0	0	0	0	3847	1247	43	2		2	CPNE5	6	36711568	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	604385	36711568	134403499	2631	70876											
FGD2	221472	broad.mit.edu	37	chr6	36975291	36975291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcatgctgtgctctgcCcaggcaataaccctggcagg	11	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36975291	A	A	36975291	1	1	61	0	1	0	0	0	0	0	0	0	5890	638	22	2		2	FGD2	6	36975291	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	263723	36975291	134139776	2632	70877											
RNF8	9025	broad.mit.edu	37	chr6	37336267	37336267	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactttccccagagtctaaAtggtgtttggctgaacagag	10	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37336267	T	T	37336267	3	4	61	1	0	0	0	0	1	0	0	0	13611	101	4	5	258	5	RNF8	6	37336267	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	360976	37336267	133778800	2633	70878											
MDGA1	266727	broad.mit.edu	37	chr6	37638567	37638567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcctcagttctgcgaagCagaaagggaaagtcatattt	10	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37638567	A	A	37638567	1	1	61	0	1	0	0	0	0	0	0	0	9499	725	25	3		3	MDGA1	6	37638567	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	302300	37638567	133476500	2634	70879											
ZFAND3	60685	broad.mit.edu	37	chr6	38064696	38064696	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcattagcggttagatttgtCattgtgctcttctgttttct	8	7	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38064696	G	G	38064696	1	3	61	0	1	0	0	0	0	0	0	0	17755	841	29	4		4	ZFAND3	6	38064696	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	426129	38064696	133050371	2635	70880											
ZFAND3	60685	broad.mit.edu	37	chr6	38084608	38084608	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctgaagtctttcgttcttCttctgagtactgtaagtttg	10	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38084608	T	T	38084608	1	4	61	0	1	0	0	0	0	0	0	0	17755	928	32	4		4	ZFAND3	6	38084608	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19912	38084608	133030459	2636	70881											
BTBD9	114781	broad.mit.edu	37	chr6	38255915	38255915	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccttccttcggctcccactCctttcttgatacttagagca	5	16	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38255915	A	A	38255915	1	1	61	0	1	0	0	0	0	0	0	0	1558	870	30	3		3	BTBD9	6	38255915	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	171307	38255915	132859152	2637	70882											
DNAH8	1769	broad.mit.edu	37	chr6	38891042	38891042	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatttccatgtgttcatctCtgaatcccatcatctatgac	4	13	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38891042	G	G	38891042	1	3	61	0	1	0	0	0	0	0	0	0	4647	928	32	4		4	DNAH8	6	38891042	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	635127	38891042	132224025	2638	70883											
DNAH8	1769	broad.mit.edu	37	chr6	38954419	38954419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtatctaaaattggagtttTagcagcagagactaagatgt	10	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38954419	C	C	38954419	1	2	61	0	1	0	0	0	0	0	0	0	4647	1769	61	5		5	DNAH8	6	38954419	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	63377	38954419	132160648	2639	70884											
DNAH8	1769	broad.mit.edu	37	chr6	38998255	38998255	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgtgtgtcttttctccCcagtaattccttaattactc	6	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38998255	A	A	38998255	1	1	61	0	1	0	0	0	0	0	0	0	4647	638	22	2		2	DNAH8	6	38998255	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	43836	38998255	132116812	2640	70885											
GLP1R	2740	broad.mit.edu	37	chr6	39041341	39041341	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtggtatcaagagaggcaGagggcagagctgttgtcccc	16	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39041341	T	T	39041341	1	4	61	0	1	0	0	0	0	0	0	0	6516	957	33	3		3	GLP1R	6	39041341	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43086	39041341	132073726	2641	70886											
KIF6	221458	broad.mit.edu	37	chr6	39465501	39465501	+	Intron	DEL	C	-	-													ttcactctcctatcatccctCcccccatcacgaagtactca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39465501	-	-	39465501	6	5	61	0	1	1	0	1	0	0	0	0	8378	870	30	0		0	KIF6	6	39465501	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	424160	39465501	131649566	2642	70887											
DAAM2	23500	broad.mit.edu	37	chr6	39811616	39811616	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgggatggggagatggGgaagagatgggaagtgcacc	21	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39811616	T	T	39811616	1	4	61	0	1	0	0	0	0	0	0	0	4249	1247	43	2		2	DAAM2	6	39811616	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	346115	39811616	131303451	2643	70888											
LRFN2	57497	broad.mit.edu	37	chr6	40364538	40364538	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtgacttaaggagagCcagagccagctaactcaaaa	12	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40364538	T	T	40364538	1	4	61	0	1	0	0	0	0	0	0	0	9025	754	26	4		4	LRFN2	6	40364538	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	552922	40364538	130750529	2644	70889											
LRFN2	57497	broad.mit.edu	37	chr6	40371470	40371470	+	Intron	DEL	C	-	-													gtgtccttccttgctcccatCccccagcctcttctctgcaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40371470	-	-	40371470	6	5	61	0	1	1	0	1	0	0	0	0	9025	870	30	0		0	LRFN2	6	40371470	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	6932	40371470	130743597	2645	70890											
LRFN2	57497	broad.mit.edu	37	chr6	40439901	40439901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacccctgcactgtcccCtccctctgtctctgctcctc	5	21	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40439901	A	A	40439901	1	1	61	0	1	0	0	0	0	0	0	0	9025	696	24	2		2	LRFN2	6	40439901	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	68431	40439901	130675166	2646	70891											
LRFN2	57497	broad.mit.edu	37	chr6	40456861	40456861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacatacacctcacagcaCaccaggaaaaagcaggcaca	6	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40456861	A	A	40456861	1	1	61	0	1	0	0	0	0	0	0	0	9025	493	17	3		3	LRFN2	6	40456861	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16960	40456861	130658206	2647	70892											
LRFN2	57497	broad.mit.edu	37	chr6	40485949	40485949	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttactgtatgctatgaacTtggccctgtactaagcattt	7	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40485949	G	G	40485949	1	3	61	0	1	0	0	0	0	0	0	0	9025	1624	56	5		5	LRFN2	6	40485949	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29088	40485949	130629118	2648	70893											
LRFN2	57497	broad.mit.edu	37	chr6	40529147	40529147	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatggccggttggggacTgatctgggaatagaatccat	15	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40529147	C	C	40529147	1	2	61	0	1	0	0	0	0	0	0	0	9025	1595	55	5		5	LRFN2	6	40529147	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	43198	40529147	130585920	2649	70894											
UNC5CL	222643	broad.mit.edu	37	chr6	41001558	41001558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggcagacagagaaagtgGgcaggaaagacagtcctcag	14	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41001558	T	T	41001558	1	4	61	0	1	0	0	0	0	0	0	0	17120	1247	43	2		2	UNC5CL	6	41001558	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	472411	41001558	130113509	2650	70895											
TREML1	340205	broad.mit.edu	37	chr6	41117732	41117732	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggaagcccaggaccacActagatctatctcttgaatc	10	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41117732	G	G	41117732	1	3	61	0	1	0	0	0	0	0	0	0	16596	174	6	5		5	TREML1	6	41117732	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	116174	41117732	129997335	2651	70896											
TREML2	79865	broad.mit.edu	37	chr6	41159921	41159921	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaaaccactggtcacatttCctcgggactttctccctgat	7	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41159921	A	A	41159921	1	1	61	0	1	0	0	0	0	0	0	0	16597	870	30	3		3	TREML2	6	41159921	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42189	41159921	129955146	2652	70897											
TREML2	79865	broad.mit.edu	37	chr6	41165996	41165996	+	Frame_Shift_Del	DEL	C	-	-													catcgtcctgcagcaagtagCggggccctttcacccagact							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41165996	-	-	41165996	7	5	61	1	0	1	0	1	0	0	0	0	16597	768	27	0	754	0	TREML2	6	41165996	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	6075	41165996	129949071	2653	70898											
MDFI	4188	broad.mit.edu	37	chr6	41614042	41614042	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacgtccccacagaagctgtGacatgtgagtcctagggggc	14	11	0	3	rs1134905		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41614042	A	A	41614042	2	1	61	1	0	0	0	0	0	0	0	1	9497	1277	45	4		4	MDFI	6	41614042	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	448046	41614042	129501025	2654	70899											
TRERF1	55809	broad.mit.edu	37	chr6	42283959	42283959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccccaagcatgcacctcCtcctccccgcattgctaatc	4	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42283959	A	A	42283959	1	1	61	0	1	0	0	0	0	0	0	0	16599	696	24	2		2	TRERF1	6	42283959	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	669917	42283959	128831108	2655	70900											
UBR2	23304	broad.mit.edu	37	chr6	42541760	42541760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaattttctttctaggaGgctcttgttttatttgacct	6	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42541760	T	T	42541760	1	4	61	0	1	0	0	0	0	0	0	0	17028	1015	35	2		2	UBR2	6	42541760	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	257801	42541760	128573307	2656	70901											
PTCRA	171558	broad.mit.edu	37	chr6	42883813	42883813	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccgagtgggccatggcCggtacatggctgctacttct	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42883813	A	A	42883813	2	1	61	1	0	0	0	0	0	0	0	1	12841	639	23	1		1	PTCRA	6	42883813	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	342053	42883813	128231254	2657	70902											
CUL9	23113	broad.mit.edu	37	chr6	43164002	43164002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgatgctgaatactgagGggtcagggcattaccttccc	11	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43164002	T	T	43164002	3	4	61	1	0	0	0	0	1	0	0	0	4094	1246	43	2	2618	2	CUL9	6	43164002	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	280189	43164002	127951065	2658	70903											
CUL9	23113	broad.mit.edu	37	chr6	43168743	43168743	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgctgagtatagacatccCctcactcccagagtctggtg	9	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43168743	T	T	43168743	1	4	61	0	1	0	0	0	0	0	0	0	4094	638	22	4		4	CUL9	6	43168743	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4741	43168743	127946324	2659	70904											
TTBK1	84630	broad.mit.edu	37	chr6	43220497	43220497	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaagatcgggggcggGggctttggtgagatctacga	17	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43220497	T	T	43220497	2	4	61	1	0	0	0	0	0	0	0	1	16802	1219	43	2		2	TTBK1	6	43220497	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	51754	43220497	127894570	2660	70905											
TTBK1	84630	broad.mit.edu	37	chr6	43251477	43251477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggctctgccctgtctgGggccccccgggaaaccccct	13	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43251477	T	T	43251477	3	4	61	1	0	0	0	0	1	0	0	0	16802	1232	43	2	3049	2	TTBK1	6	43251477	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30980	43251477	127863590	2661	70906											
SLC22A7	10864	broad.mit.edu	37	chr6	43267865	43267865	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaaagatgagattaatcaGagcctgagatttgaggatag	13	3	1	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43267865	T	T	43267865	1	4	61	0	1	0	0	0	0	0	0	0	14573	957	33	3		3	SLC22A7	6	43267865	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16388	43267865	127847202	2662	70907											
CRIP3	401262	broad.mit.edu	37	chr6	43274275	43274275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttaaaggggaagaggccCtggctatgtctgaggtggag	16	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43274275	A	A	43274275	1	1	61	0	1	0	0	0	0	0	0	0	3908	696	24	2		2	CRIP3	6	43274275	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6410	43274275	127840792	2663	70908											
ZNF318	24149	broad.mit.edu	37	chr6	43296108	43296108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgtcagcagggcctatgGtggttccatgtgtgttaaat	12	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43296108	T	T	43296108	1	4	61	0	1	0	0	0	0	0	0	0	17962	1276	44	3		3	ZNF318	6	43296108	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21833	43296108	127818959	2664	70909											
ZNF318	24149	broad.mit.edu	37	chr6	43308232	43308232	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatataatgggttttcatcCacatatttctgggaagaaaa	7	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43308232	A	A	43308232	2	1	61	1	0	0	0	0	0	0	0	1	17962	581	21	2		2	ZNF318	6	43308232	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12124	43308232	127806835	2665	70910											
POLH	5429	broad.mit.edu	37	chr6	43572524	43572525	+	Intron	DNP	GG	AT	AT													cctcttttaaaggggtcagtGggtaggttttggtagctgtg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43572525	AT	AT	43572524	1	1	61	0	1	0	0	0	0	0	0	0	12297	1363	47	4		4	POLH	6	43572524	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	264292	43572524	127542543	2666	70911											
MRPS18A	55168	broad.mit.edu	37	chr6	43652016	43652016	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccagagaccaaggtccctCttggagaggatctgtaaaaa	11	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43652016	A	A	43652016	1	1	61	0	1	0	0	0	0	0	0	0	9922	928	32	3		3	MRPS18A	6	43652016	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79492	43652016	127463051	2667	70912											
VEGFA	7422	broad.mit.edu	37	chr6	43749660	43749660	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctctctgctgatgctctAgcttagatgtctttcctttt	6	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43749660	T	T	43749660	1	4	61	0	1	0	0	0	0	0	0	0	17277	435	15	5		5	VEGFA	6	43749660	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	97644	43749660	127365407	2668	70913											
TCTE1	202500	broad.mit.edu	37	chr6	44254321	44254321	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacagtgttgggggacacctCaacatgatgcctcaggctgg	13	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44254321	A	A	44254321	1	1	61	0	1	0	0	0	0	0	0	0	15839	841	29	3		3	TCTE1	6	44254321	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	504661	44254321	126860746	2669	70914											
AARS2	57505	broad.mit.edu	37	chr6	44270607	44270607	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagctggcggtccccgaTgataaccaggtcccctacag	12	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44270607	A	A	44270607	3	1	61	1	0	0	0	0	1	0	0	0	20	1464	51	5	685	5	AARS2	6	44270607	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16286	44270607	126844460	2670	70915											
SPATS1	221409	broad.mit.edu	37	chr6	44336083	44336083	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggatcatcttcagcccTtgtatgattttgttttcaaa	7	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44336083	C	C	44336083	1	2	61	0	1	0	0	0	0	0	0	0	15134	1624	56	5		5	SPATS1	6	44336083	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	65476	44336083	126778984	2671	70916											
RUNX2	860	broad.mit.edu	37	chr6	45464774	45464774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggataaggtggagtgGggctggggagctcagagaag	22	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45464774	T	T	45464774	1	4	61	0	1	0	0	0	0	0	0	0	13859	1247	43	2		2	RUNX2	6	45464774	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1128691	45464774	125650293	2672	70917											
MEP1A	4224	broad.mit.edu	37	chr6	46777373	46777373	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaatgtatcattcttttgTctttgcgtcctcataactta	4	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46777373	G	G	46777373	1	3	61	0	1	0	0	0	0	0	0	0	9568	1682	58	5		5	MEP1A	6	46777373	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1312599	46777373	124337694	2673	70918											
MEP1A	4224	broad.mit.edu	37	chr6	46802995	46802995	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcctgaagatatcacccAcctcagccagactgaagttc	6	13	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46802995	G	G	46802995	3	3	61	1	0	0	0	0	1	0	0	0	9568	159	6	5	1843	5	MEP1A	6	46802995	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	25622	46802995	124312072	2674	70919											
GPR116	221395	broad.mit.edu	37	chr6	46845899	46845899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctacttggccaagaggCaaaaacctatttgcaaaagg	8	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46845899	A	A	46845899	1	1	61	0	1	0	0	0	0	0	0	0	6698	725	25	3		3	GPR116	6	46845899	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42904	46845899	124269168	2675	70920											
OPN5	221391	broad.mit.edu	37	chr6	47779386	47779386	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatatgtagatattaaattGcatttttcttctcctatatc	4	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47779386	A	A	47779386	1	1	61	0	1	0	0	0	0	0	0	0	10977	1334	46	4		4	OPN5	6	47779386	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	933487	47779386	123335681	2676	70921											
C6orf138	442213	broad.mit.edu	37	chr6	47846647	47846647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccatgaagacaaaggaggGgttgaacacgatgaatcgga	14	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47846647	T	T	47846647	3	4	61	1	0	0	0	0	1	0	0	0	2355	1232	43	2	611	2	C6orf138	6	47846647	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67261	47846647	123268420	2677	70922											
C6orf138	442213	broad.mit.edu	37	chr6	47976478	47976478	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatactgtgagcacccccaGgaggcccaggaagggcttac	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47976478	A	A	47976478	2	1	61	1	0	0	0	0	0	0	0	1	2355	991	35	4		4	C6orf138	6	47976478	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	129831	47976478	123138589	2678	70923											
C6orf138	442213	broad.mit.edu	37	chr6	47989349	47989349	+	Intron	DEL	T	-	-													gctaagtgaaagctagcttaTtttttttttcttggattata							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47989349	-	-	47989349	6	5	61	0	1	1	0	1	0	0	0	0	2355	1508	52	0		0	C6orf138	6	47989349	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	12871	47989349	123125718	2679	70924											
MUT	4594	broad.mit.edu	37	chr6	49403324	49403324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacagcctgctgggccaCttcacgaggagtctaaacag	10	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49403324	A	A	49403324	3	1	61	1	0	0	0	0	1	0	0	0	10085	565	20	3	291	3	MUT	6	49403324	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1413975	49403324	121711743	2680	70925											
RHAG	6005	broad.mit.edu	37	chr6	49580094	49580094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcagagtttgactcagaaCatctgctgtacttacagtca	7	9	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49580094	T	T	49580094	1	4	61	0	1	0	0	0	0	0	0	0	13424	493	17	4		4	RHAG	6	49580094	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	176770	49580094	121534973	2681	70926											
CRISP2	7180	broad.mit.edu	37	chr6	49677086	49677086	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggtactagtagaatcataAtgaggccaaccttgtctttg	9	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49677086	T	T	49677086	1	4	61	0	1	0	0	0	0	0	0	0	3912	116	4	5		5	CRISP2	6	49677086	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	96992	49677086	121437981	2682	70927											
CRISP3	10321	broad.mit.edu	37	chr6	49704449	49704449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaactaaaatctcctctgaGgccacaaataccaatttctg	4	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49704449	T	T	49704449	1	4	61	0	1	0	0	0	0	0	0	0	3913	1015	35	2		2	CRISP3	6	49704449	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	27363	49704449	121410618	2683	70928											
CRISP1	167	broad.mit.edu	37	chr6	49803073	49803073	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaagtggctttacagaataGgatagttgttgagtggttgc	13	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49803073	C	C	49803073	3	2	61	1	0	0	0	0	1	0	0	0	3911	991	35	4	47	4	CRISP1	6	49803073	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98624	49803073	121311994	2684	70929											
DEFB110	245913	broad.mit.edu	37	chr6	49989677	49989677	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcttaaaaaaagggggcAacagacctcctttttcaagt	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49989677	G	G	49989677	1	3	61	0	1	0	0	0	0	0	0	0	4439	145	5	5		5	DEFB110	6	49989677	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	186604	49989677	121125390	2685	70930											
TFAP2B	7021	broad.mit.edu	37	chr6	50803497	50803497	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccagcacagtccaaactcTgggttgtttgatttcttgat	8	10	2	2	rs138665670	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50803497	A	A	50803497	1	1	61	0	1	0	0	0	0	0	0	0	15911	1595	55	5		5	TFAP2B	6	50803497	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	813820	50803497	120311570	2686	70931											
TFAP2B	7021	broad.mit.edu	37	chr6	50810975	50810975	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccgcgctcacggccctgcAgaactatctcaccgaggcgc	11	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50810975	T	T	50810975	3	4	61	1	0	0	0	0	1	0	0	0	15911	188	7	5	1279	5	TFAP2B	6	50810975	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	7478	50810975	120304092	2687	70932											
PKHD1	5314	broad.mit.edu	37	chr6	51483871	51483871	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggccaaatgcccccaacTtccctgatcacagttgctcc	6	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51483871	C	C	51483871	1	2	61	0	1	0	0	0	0	0	0	0	12066	1624	56	5		5	PKHD1	6	51483871	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	672896	51483871	119631196	2688	70933											
PKHD1	5314	broad.mit.edu	37	chr6	51799150	51799150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggaaaattgtcagtccCtgggaggataaggcttaccg	13	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51799150	A	A	51799150	1	1	61	0	1	0	0	0	0	0	0	0	12066	696	24	2		2	PKHD1	6	51799150	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	315279	51799150	119315917	2689	70934											
IL17F	112744	broad.mit.edu	37	chr6	52111473	52111473	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatcacagggctatataaGggaatggctgcccctatcat	10	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52111473	T	T	52111473	1	4	61	0	1	0	0	0	0	0	0	0	7708	1015	35	2		2	IL17F	6	52111473	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	312323	52111473	119003594	2690	70935											
MCM3	4172	broad.mit.edu	37	chr6	52138095	52138095	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgggtgtcctgctgatcttCctggctaaagttgggatcat	12	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52138095	G	G	52138095	3	3	61	1	0	0	0	0	1	0	0	0	9480	864	30	4	845	4	MCM3	6	52138095	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26622	52138095	118976972	2691	70936											
GSTA2	2939	broad.mit.edu	37	chr6	52616080	52616081	+	Intron	DNP	GG	CT	CT													aggacatcacagagaactcaGgaacagaaaccacactgaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	52616081	CT	CT	52616080	1	2	61	0	1	0	0	0	0	0	0	0	6897	1015	35	4		4	GSTA2	6	52616080	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	477985	52616080	118498987	2692	70937											
GSTA1	2938	broad.mit.edu	37	chr6	52660976	52660976	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaacagaaaatataccGtacagggctctctcctttat	8	9	1	2	rs9367496	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52660976	T	T	52660976	1	4	61	0	1	0	0	0	0	0	0	0	6896	1160	40	3		3	GSTA1	6	52660976	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44896	52660976	118454091	2693	70938											
GSTA5	221357	broad.mit.edu	37	chr6	52713628	52713628	+	5'Flank	DEL	T	-	-													aggcctggtgaacattggggTcaaaacatactcagtcccag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52713628	-	-	52713628	6	5	61	0	1	1	0	1	0	0	0	0	6900	1682	58	0		0	GSTA5	6	52713628	5'Flank	DEL	T	TCGA-17-Z031-01A-01W-0746-08	52652	52713628	118401439	2694	70939											
C6orf142	90523	broad.mit.edu	37	chr6	53974388	53974388	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaaatacttgctattccatCccaccttcatagtttccctt	3	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53974388	T	T	53974388	1	4	61	0	1	0	0	0	0	0	0	0	2356	870	30	4		4	C6orf142	6	53974388	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1260760	53974388	117140679	2695	70940											
C6orf142	90523	broad.mit.edu	37	chr6	53980876	53980876	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atagcatacaggaatggaggGatgatacagagcctagggtt	14	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53980876	A	A	53980876	1	1	61	0	1	0	0	0	0	0	0	0	2356	1189	41	4		4	C6orf142	6	53980876	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6488	53980876	117134191	2696	70941											
TINAG	27283	broad.mit.edu	37	chr6	54216086	54216086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacacttaacattgtacaCcaatcaatgggtttagtatg	6	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54216086	A	A	54216086	1	1	61	0	1	0	0	0	0	0	0	0	16044	522	18	3		3	TINAG	6	54216086	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	235210	54216086	116898981	2697	70942											
TINAG	27283	broad.mit.edu	37	chr6	54219198	54219198	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgaatcacacagccccttCttagattcatctccttgcaa	5	14	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54219198	G	G	54219198	1	3	61	0	1	0	0	0	0	0	0	0	16044	928	32	4		4	TINAG	6	54219198	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3112	54219198	116895869	2698	70943											
FAM83B	222584	broad.mit.edu	37	chr6	54791410	54791410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgtaaggcatcttaagGtagatgaatataaaactgaa	8	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54791410	T	T	54791410	1	4	61	0	1	0	0	0	0	0	0	0	5687	1276	44	3		3	FAM83B	6	54791410	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	572212	54791410	116323657	2699	70944											
FAM83B	222584	broad.mit.edu	37	chr6	54804952	54804952	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttatgctggggaacagccaGaaacagtgccatacctcctg	11	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54804952	C	C	54804952	3	2	61	1	0	0	0	0	1	0	0	0	5687	943	33	4	1197	4	FAM83B	6	54804952	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13542	54804952	116310115	2700	70945											
HCRTR2	3062	broad.mit.edu	37	chr6	55081104	55081104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatttatgtccttatcatAtgcaaataccttcattccat	2	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55081104	T	T	55081104	1	4	61	0	1	0	0	0	0	0	0	0	7069	464	16	5		5	HCRTR2	6	55081104	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	276152	55081104	116033963	2701	70946											
HCRTR2	3062	broad.mit.edu	37	chr6	55113465	55113465	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgtggaagaaccaccaCatgaggacggtaaccaacta	11	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55113465	T	T	55113465	2	4	61	1	0	0	0	0	0	0	0	1	7069	477	17	4		4	HCRTR2	6	55113465	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32361	55113465	116001602	2702	70947											
GFRAL	389400	broad.mit.edu	37	chr6	55206145	55206145	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagaggaacgatcagacaAcaacatttgctgttcagcaa	8	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55206145	T	T	55206145	1	4	61	0	1	0	0	0	0	0	0	0	6415	58	2	5		5	GFRAL	6	55206145	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	92680	55206145	115908922	2703	70948											
GFRAL	389400	broad.mit.edu	37	chr6	55264237	55264237	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttggttatggtcaagctTaggtaactgaatataaatta	9	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55264237	C	C	55264237	2	2	61	1	0	0	0	0	0	0	0	1	6415	1741	61	5		5	GFRAL	6	55264237	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	58092	55264237	115850830	2704	70949											
BMP5	653	broad.mit.edu	37	chr6	55659147	55659147	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcacccaatgattgctggtCacagtgatatcaaagacaag	8	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55659147	A	A	55659147	2	1	61	1	0	0	0	0	0	0	0	1	1469	813	29	3		3	BMP5	6	55659147	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	394910	55659147	115455920	2705	70950											
BMP5	653	broad.mit.edu	37	chr6	55739649	55739649	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatacccttaagtaaaaaTacagtcagatgcatttttgt	5	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55739649	C	C	55739649	2	2	61	1	0	0	0	0	0	0	0	1	1469	1393	49	5		5	BMP5	6	55739649	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	80502	55739649	115375418	2706	70951											
COL21A1	81578	broad.mit.edu	37	chr6	55924148	55924148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaatgtcttttaaaaaCcagcttgccatctatttttt	4	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55924148	A	A	55924148	1	1	61	0	1	0	0	0	0	0	0	0	3712	522	18	3		3	COL21A1	6	55924148	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	184499	55924148	115190919	2707	70952											
COL21A1	81578	broad.mit.edu	37	chr6	56021648	56021648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactttgacactgtaatccCagatataccggagatgacta	7	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56021648	A	A	56021648	1	1	61	0	1	0	0	0	0	0	0	0	3712	609	21	2		2	COL21A1	6	56021648	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	97500	56021648	115093419	2708	70953											
COL21A1	81578	broad.mit.edu	37	chr6	56044485	56044485	+	Frame_Shift_Del	DEL	G	-	-													ttggcaatagctctaagttcGgcatcttctgtttctgaacc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56044485	-	-	56044485	7	5	61	1	0	1	0	1	0	0	0	0	3712	1103	39	0	2454	0	COL21A1	6	56044485	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	22837	56044485	115070582	2709	70954											
COL21A1	81578	broad.mit.edu	37	chr6	56079884	56079885	+	Intron	DEL	TG	-	-													gtggcaggcaatttcaaaacTgagaaatttgacacttaaag					rs142467983		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56079885	-	-	56079884	6	5	61	0	1	1	0	1	0	0	0	0	3712	1595	55	0		0	COL21A1	6	56079884	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	35399	56079884	115035183	2710	70955											
COL21A1	81578	broad.mit.edu	37	chr6	56178021	56178021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatatacactgcacaaaaCagtcctcccttatttgtgag	5	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56178021	A	A	56178021	1	1	61	0	1	0	0	0	0	0	0	0	3712	493	17	3		3	COL21A1	6	56178021	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	98137	56178021	114937046	2711	70956											
COL21A1	81578	broad.mit.edu	37	chr6	56259084	56259084	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgctgctagtggaacccTgcggatgtgaggcctgcctt	14	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56259084	A	A	56259084	1	1	61	0	1	0	0	0	0	0	0	0	3712	1595	55	5		5	COL21A1	6	56259084	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	81063	56259084	114855983	2712	70957											
DST	667	broad.mit.edu	37	chr6	56335963	56335963	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcccatcctggtctttaTcaattctcctgaagaagtcc	5	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56335963	A	A	56335963	3	1	61	1	0	0	0	0	1	0	0	0	4823	1435	50	5	1158	5	DST	6	56335963	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	76879	56335963	114779104	2713	70958											
DST	667	broad.mit.edu	37	chr6	56433135	56433135	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgtgcttacagatgcCatgtttcttgtcactttcac	7	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56433135	T	T	56433135	1	4	61	0	1	0	0	0	0	0	0	0	4823	609	21	4		4	DST	6	56433135	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	97172	56433135	114681932	2714	70959											
DST	667	broad.mit.edu	37	chr6	56444790	56444790	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactactgaaggccaagggcTgaagacaattccaccgttcg	11	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56444790	A	A	56444790	1	1	61	0	1	0	0	0	0	0	0	0	4823	1595	55	5		5	DST	6	56444790	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	11655	56444790	114670277	2715	70960											
DST	667	broad.mit.edu	37	chr6	56462535	56462535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatatgtttataacaacaCaccttaactttctgatattg	3	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56462535	A	A	56462535	1	1	61	0	1	0	0	0	0	0	0	0	4823	493	17	3		3	DST	6	56462535	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17745	56462535	114652532	2716	70961											
DST	667	broad.mit.edu	37	chr6	56495287	56495287	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacataacatgttcttcaccTtggaacactgatacatttac	5	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56495287	A	A	56495287	1	1	61	0	1	0	0	0	0	0	0	0	4823	1624	56	5		5	DST	6	56495287	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	32752	56495287	114619780	2717	70962											
DST	667	broad.mit.edu	37	chr6	56765077	56765077	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctattccttgctgaaactCatatgagtacgctgccactt	6	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56765077	G	G	56765077	1	3	61	0	1	0	0	0	0	0	0	0	4823	841	29	4		4	DST	6	56765077	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	269790	56765077	114349990	2718	70963											
PRIM2	5558	broad.mit.edu	37	chr6	57327689	57327690	+	Intron	INS	-	A	A													gtagagtctttaacaaatacINSaaaaaaggaagcttccagtt					rs142591900	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57327690	A	A	57327689	6	5	61	0	1	1	1	0	0	0	0	0	12597	493	17	0		0	PRIM2	6	57327689	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	562612	57327689	113787378	2719	70964											
PRIM2	5558	broad.mit.edu	37	chr6	57334082	57334082	+	Intron	DEL	G	-	-													aatgccatgcaaggtgaactGttggtattttcacagcaggc					rs11320788		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57334082	-	-	57334082	6	5	61	0	1	1	0	1	0	0	0	0	12597	1392	48	0		0	PRIM2	6	57334082	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	6393	57334082	113780985	2720	70965											
PRIM2	5558	broad.mit.edu	37	chr6	57347387	57347388	+	Intron	DEL	TG	-	-													aatacatttagggattttttTgttttttttaaacacaggag					rs66682655		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57347388	-	-	57347387	6	5	61	0	1	1	0	1	0	0	0	0	12597	1827	63	0		0	PRIM2	6	57347387	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	13305	57347387	113767680	2721	70966											
PRIM2	5558	broad.mit.edu	37	chr6	57373874	57373874	+	Intron	DEL	C	-	-													tcaagcaccaatagtgttttCctttatggttttgaaaaatt					rs113195192		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57373874	-	-	57373874	6	5	61	0	1	1	0	1	0	0	0	0	12597	870	30	0		0	PRIM2	6	57373874	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	26487	57373874	113741193	2722	70967											
PRIM2	5558	broad.mit.edu	37	chr6	57384649	57384649	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtcctgaggcgacgtcctCctcagctgacaggattaaga	13	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57384649	A	A	57384649	1	1	61	0	1	0	0	0	0	0	0	0	12597	870	30	3		3	PRIM2	6	57384649	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10775	57384649	113730418	2723	70968											
PRIM2	5558	broad.mit.edu	37	chr6	57388617	57388617	+	Intron	DEL	G	-	-													ccatcttctgctaacaatcaGtgccacagcatgaaaagatt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57388617	-	-	57388617	6	5	61	0	1	1	0	1	0	0	0	0	12597	1044	36	0		0	PRIM2	6	57388617	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	3968	57388617	113726450	2724	70969											
PRIM2	5558	broad.mit.edu	37	chr6	57394592	57394595	+	Intron	DEL	AATA	-	-													agagggacaacataataaatAataaatgagcaatataatgt					rs66604840		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57394595	-	-	57394592	6	5	61	0	1	1	0	1	0	0	0	0	12597	377	13	0		0	PRIM2	6	57394592	Intron	DEL	AATA	TCGA-17-Z031-01A-01W-0746-08	5975	57394592	113720475	2725	70970											
PRIM2	5558	broad.mit.edu	37	chr6	57398118	57398119	+	Intron	INS	-	T	T													cttaacttaaaactctactgINSttttttcttgtagctttcta					rs147643173		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398119	T	T	57398118	6	5	61	0	1	1	1	0	0	0	0	0	12597	1392	48	0		0	PRIM2	6	57398118	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	3526	57398118	113716949	2726	70971											
PRIM2	5558	broad.mit.edu	37	chr6	57420440	57420440	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgctgtttgtaagttaAgtgtatgtaataatctaaat	8	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57420440	C	C	57420440	1	2	61	0	1	0	0	0	0	0	0	0	12597	87	3	5		5	PRIM2	6	57420440	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	22322	57420440	113694627	2727	70972											
PRIM2	5558	broad.mit.edu	37	chr6	57430122	57430122	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgtctccaagcaattctCctgtgtcagcctcccgagta	7	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57430122	A	A	57430122	1	1	61	0	1	0	0	0	0	0	0	0	12597	870	30	3		3	PRIM2	6	57430122	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9682	57430122	113684945	2728	70973											
PRIM2	5558	broad.mit.edu	37	chr6	57456621	57456621	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaactgttaaagaaaaataaGagataatagttaaaatggta	7	1	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57456621	C	C	57456621	1	2	61	0	1	0	0	0	0	0	0	0	12597	957	33	4		4	PRIM2	6	57456621	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26499	57456621	113658446	2729	70974											
PRIM2	5558	broad.mit.edu	37	chr6	57457703	57457704	+	Intron	INS	-	G	G													gaccctgatgctgagcttgaINSattctgttagtacttatgat					rs146176331		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57457704	G	G	57457703	6	5	61	0	1	1	1	0	0	0	0	0	12597	261	9	0		0	PRIM2	6	57457703	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1082	57457703	113657364	2730	70975											
PRIM2	5558	broad.mit.edu	37	chr6	57477782	57477782	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgctctgtaaaagacagcTttaagagaacaagataagcc	8	7	1	3	rs141045626	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57477782	G	G	57477782	1	3	61	0	1	0	0	0	0	0	0	0	12597	1624	56	5		5	PRIM2	6	57477782	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	20079	57477782	113637285	2731	70976											
PRIM2	5558	broad.mit.edu	37	chr6	57500553	57500553	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcacgagaaacacgcaaccTagatcccttgcatgcggggt	10	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57500553	C	C	57500553	1	2	61	0	1	0	0	0	0	0	0	0	12597	1537	53	5		5	PRIM2	6	57500553	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	22771	57500553	113614514	2732	70977											
PRIM2	5558	broad.mit.edu	37	chr6	57507457	57507457	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctatacaccactaatagAcagagacccaaatcatgagt	5	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57507457	T	T	57507457	1	4	61	0	1	0	0	0	0	0	0	0	12597	290	10	5		5	PRIM2	6	57507457	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6904	57507457	113607610	2733	70978											
PRIM2	5558	broad.mit.edu	37	chr6	57507952	57507952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggccccagaaataatgcCacagatctataaccttctga	7	11	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57507952	A	A	57507952	1	1	61	0	1	0	0	0	0	0	0	0	12597	609	21	2		2	PRIM2	6	57507952	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	495	57507952	113607115	2734	70979											
PRIM2	5558	broad.mit.edu	37	chr6	57509429	57509429	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actatacccataatacagcaTcagcaatttccagtttggat	5	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57509429	C	C	57509429	1	2	61	0	1	0	0	0	0	0	0	0	12597	1450	50	5		5	PRIM2	6	57509429	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1477	57509429	113605638	2735	70980											
PRIM2	5558	broad.mit.edu	37	chr6	57512353	57512353	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattaagcgttagaatgcaaAcagctagaatccatgtttca	8	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57512353	G	G	57512353	1	3	61	0	1	0	0	0	0	0	0	0	12597	58	2	5		5	PRIM2	6	57512353	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2924	57512353	113602714	2736	70981											
KHDRBS2	202559	broad.mit.edu	37	chr6	62390939	62390939	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggtggtgccttcaagctagAgcgggttgtggcccattctt	14	10	2	1	rs111625311		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62390939	G	G	62390939	3	3	61	1	0	0	0	0	1	0	0	0	8217	304	11	5	74	5	KHDRBS2	6	62390939	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4878586	62390939	108724128	2737	70982											
KHDRBS2	202559	broad.mit.edu	37	chr6	62442462	62442462	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagcaacttgataattcAgaaagataatggagaaaaaa	9	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62442462	T	T	62442462	1	4	61	0	1	0	0	0	0	0	0	0	8217	203	7	5		5	KHDRBS2	6	62442462	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	51523	62442462	108672605	2738	70983											
PHF3	23469	broad.mit.edu	37	chr6	64422495	64422495	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcagaaagcaaagatggaGatagttgccggaatggagaa	13	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64422495	A	A	64422495	3	1	61	1	0	0	0	0	1	0	0	0	11931	942	33	4	5069	4	PHF3	6	64422495	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1980033	64422495	106692572	2739	70984											
EYS	346007	broad.mit.edu	37	chr6	65750171	65750171	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagttgattccttctgacaActatgagagagaatctcttc	7	8	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65750171	G	G	65750171	1	3	61	0	1	0	0	0	0	0	0	0	5375	58	2	5		5	EYS	6	65750171	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1327676	65750171	105364896	2740	70985											
EYS	346007	broad.mit.edu	37	chr6	66013921	66013921	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtctcaacatgaggccactCcaggggcaaggttgctactg	12	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66013921	A	A	66013921	1	1	61	0	1	0	0	0	0	0	0	0	5375	870	30	3		3	EYS	6	66013921	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	263750	66013921	105101146	2741	70986											
BAI3	577	broad.mit.edu	37	chr6	69349325	69349325	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagcgaccacccaaagaagGtaagtgccaaagagagggga	13	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69349325	C	C	69349325	5	2	61	1	0	0	0	0	0	0	1	0	1305	1275	44	4	760	4	BAI3	6	69349325	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3335404	69349325	101765742	2742	70987											
BAI3	577	broad.mit.edu	37	chr6	69483649	69483649	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctccatgggaagagatGtataagctaagactagaaat	10	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69483649	T	T	69483649	1	4	61	0	1	0	0	0	0	0	0	0	1305	1392	48	3		3	BAI3	6	69483649	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	134324	69483649	101631418	2743	70988											
BAI3	577	broad.mit.edu	37	chr6	69511372	69511372	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcagatcacttgaggtcagGagtttcagaccagcctggtc	13	10	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69511372	A	A	69511372	1	1	61	0	1	0	0	0	0	0	0	0	1305	1189	41	4		4	BAI3	6	69511372	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	27723	69511372	101603695	2744	70989											
BAI3	577	broad.mit.edu	37	chr6	69666448	69666448	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtagtagattaacaaaaaTggaaggggtagtaacattct	10	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69666448	A	A	69666448	1	1	61	0	1	0	0	0	0	0	0	0	1305	1479	51	5		5	BAI3	6	69666448	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	155076	69666448	101448619	2745	70990											
LMBRD1	55788	broad.mit.edu	37	chr6	70389912	70389912	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattaatatcatgactactCtgtgcatgcccattattttt	4	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70389912	T	T	70389912	1	4	61	0	1	0	0	0	0	0	0	0	8916	928	32	4		4	LMBRD1	6	70389912	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	723464	70389912	100725155	2746	70991											
COL19A1	1310	broad.mit.edu	37	chr6	70745795	70745795	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttctttaatctattttaGggagatacaggacccccagg	8	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70745795	A	A	70745795	5	1	61	1	0	0	0	0	0	0	1	0	3708	1014	35	4	1184	4	COL19A1	6	70745795	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	355883	70745795	100369272	2747	70992											
COL19A1	1310	broad.mit.edu	37	chr6	70778423	70778423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttaggggatacttatttGggaacactaatgaaaatgaa	9	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70778423	T	T	70778423	1	4	61	0	1	0	0	0	0	0	0	0	3708	1363	47	2		2	COL19A1	6	70778423	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32628	70778423	100336644	2748	70993											
COL19A1	1310	broad.mit.edu	37	chr6	70847823	70847823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacatgtatttacacacttAatccataaaaagtttccata	2	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70847823	G	G	70847823	1	3	61	0	1	0	0	0	0	0	0	0	3708	377	13	5		5	COL19A1	6	70847823	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	69400	70847823	100267244	2749	70994											
COL19A1	1310	broad.mit.edu	37	chr6	70861423	70861424	+	Intron	DNP	GG	TT	TT													attgagtcaattgcttagctGgaactaaaattcaattttta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	70861424	TT	TT	70861423	1	4	61	0	1	0	0	0	0	0	0	0	3708	1363	47	2		2	COL19A1	6	70861423	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	13600	70861423	100253644	2750	70995											
COL19A1	1310	broad.mit.edu	37	chr6	70866215	70866215	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtcttctagggtgataTagggccacggggtcctccag	13	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70866215	A	A	70866215	3	1	61	1	0	0	0	0	1	0	0	0	3708	1406	49	5	2318	5	COL19A1	6	70866215	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4792	70866215	100248852	2751	70996											
COL19A1	1310	broad.mit.edu	37	chr6	70886533	70886533	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacctgtggccagggatcaAgacaggcaggagagcatacc	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70886533	C	C	70886533	1	2	61	0	1	0	0	0	0	0	0	0	3708	87	3	5		5	COL19A1	6	70886533	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	20318	70886533	100228534	2752	70997											
COL19A1	1310	broad.mit.edu	37	chr6	70897851	70897851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccttacaggcatgaagGgggccatcggtcctatgggt	15	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70897851	T	T	70897851	3	4	61	1	0	0	0	0	1	0	0	0	3708	1232	43	2	3111	2	COL19A1	6	70897851	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11318	70897851	100217216	2753	70998											
COL9A1	1297	broad.mit.edu	37	chr6	70935491	70935491	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattctttactaaagctggtCttgaaaaatctatgctagcc	6	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70935491	T	T	70935491	1	4	61	0	1	0	0	0	0	0	0	0	3739	928	32	4		4	COL9A1	6	70935491	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37640	70935491	100179576	2754	70999											
COL9A1	1297	broad.mit.edu	37	chr6	70949038	70949038	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaatgtattcacatttgaTaatttcctgaaaacacttta	3	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70949038	C	C	70949038	1	2	61	0	1	0	0	0	0	0	0	0	3739	1421	49	5		5	COL9A1	6	70949038	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13547	70949038	100166029	2755	71000											
COL9A1	1297	broad.mit.edu	37	chr6	70965173	70965173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattagaaagtatcatccaCgtcaccaaactattagtctt	4	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70965173	A	A	70965173	1	1	61	0	1	0	0	0	0	0	0	0	3739	551	19	3		3	COL9A1	6	70965173	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16135	70965173	100149894	2756	71001											
COL9A1	1297	broad.mit.edu	37	chr6	71004046	71004046	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccactgggaatcaaacaaggAggacaaattcgaaaaggctg	11	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71004046	T	T	71004046	3	4	61	1	0	0	0	0	1	0	0	0	3739	304	11	5	2457	5	COL9A1	6	71004046	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	38873	71004046	100111021	2757	71002											
OGFRL1	79627	broad.mit.edu	37	chr6	72011638	72011638	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaacagttactactccCacagaaaaaaaggagagtgt	9	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72011638	A	A	72011638	2	1	61	1	0	0	0	0	0	0	0	1	10939	581	21	2		2	OGFRL1	6	72011638	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1007592	72011638	99103429	2758	71003											
RIMS1	22999	broad.mit.edu	37	chr6	72806711	72806711	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaaataggggaagaagCgcggcgttaccagggcgagc	17	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72806711	T	T	72806711	3	4	61	1	0	0	0	0	1	0	0	0	13478	768	27	4	315	4	RIMS1	6	72806711	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	795073	72806711	98308356	2759	71004											
RIMS1	22999	broad.mit.edu	37	chr6	72806843	72806843	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcgcgctgcggaggccGcgtgtctctacggtcaaaca	14	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72806843	A	A	72806843	3	1	61	1	0	0	0	0	1	0	0	0	13478	1087	38	4	447	4	RIMS1	6	72806843	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132	72806843	98308224	2760	71005											
RIMS1	22999	broad.mit.edu	37	chr6	72809704	72809704	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtggttagaatccatacTttcttttctatcatttgtta	5	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72809704	G	G	72809704	1	3	61	0	1	0	0	0	0	0	0	0	13478	1624	56	5		5	RIMS1	6	72809704	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2861	72809704	98305363	2761	71006											
RIMS1	22999	broad.mit.edu	37	chr6	72961112	72961112	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccacaaagtaattatgcTgtaatgatctaattagtgat	7	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72961112	C	C	72961112	1	2	61	0	1	0	0	0	0	0	0	0	13478	1595	55	5		5	RIMS1	6	72961112	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	151408	72961112	98153955	2762	71007											
KCNQ5	56479	broad.mit.edu	37	chr6	73696833	73696833	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagttgaggctccggaaTacatccatccccaaaggaga	9	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73696833	C	C	73696833	1	2	61	0	1	0	0	0	0	0	0	0	8156	1421	49	5		5	KCNQ5	6	73696833	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	735721	73696833	97418234	2763	71008											
KCNQ5	56479	broad.mit.edu	37	chr6	73696963	73696963	+	Intron	DEL	G	-	-													agaacaagaggaaagagagtGgggcagcaagagacccttgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73696963	-	-	73696963	6	5	61	0	1	1	0	1	0	0	0	0	8156	1363	47	0		0	KCNQ5	6	73696963	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	130	73696963	97418104	2764	71009											
KCNQ5	56479	broad.mit.edu	37	chr6	73843774	73843774	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaacacagtaaggaggatGatcatttctggtcaacaatg	10	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73843774	T	T	73843774	1	4	61	0	1	0	0	0	0	0	0	0	8156	1305	45	3		3	KCNQ5	6	73843774	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	146811	73843774	97271293	2765	71010											
KCNQ5	56479	broad.mit.edu	37	chr6	73867233	73867233	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactccccggtgaccagacTgaagaactaacagaactgac	8	13	0	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73867233	A	A	73867233	1	1	61	0	1	0	0	0	0	0	0	0	8156	1595	55	5		5	KCNQ5	6	73867233	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23459	73867233	97247834	2766	71011											
KHDC1	80759	broad.mit.edu	37	chr6	73952133	73952133	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcaaaggccactcaccgaaGatgagctcctcctggtcctc	10	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73952133	A	A	73952133	2	1	61	1	0	0	0	0	0	0	0	1	8214	932	33	4		4	KHDC1	6	73952133	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	84900	73952133	97162934	2767	71012											
DPPA5	340168	broad.mit.edu	37	chr6	74063590	74063590	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcacctcgctcctggcgcTggcggtgccactcagccatg	11	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74063590	A	A	74063590	3	1	61	1	0	0	0	0	1	0	0	0	4777	1580	55	5	80	5	DPPA5	6	74063590	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	111457	74063590	97051477	2768	71013											
EEF1A1	1915	broad.mit.edu	37	chr6	74228007	74228007	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttggaaaaaagatttgcaTtcagtgcaaatccaaagtct	7	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74228007	A	A	74228007	1	1	61	0	1	0	0	0	0	0	0	0	4963	1508	52	5		5	EEF1A1	6	74228007	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	164417	74228007	96887060	2769	71014											
CD109	135228	broad.mit.edu	37	chr6	74476802	74476802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattcacttttaagttctGgggtacatgtgcaggtttgt	10	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74476802	T	T	74476802	1	4	61	0	1	0	0	0	0	0	0	0	2993	1363	47	2		2	CD109	6	74476802	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	248795	74476802	96638265	2770	71015											
CD109	135228	broad.mit.edu	37	chr6	74512893	74512893	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcataattagaaactttcatCcattgcaagttaatgattac	4	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74512893	A	A	74512893	1	1	61	0	1	0	0	0	0	0	0	0	2993	870	30	3		3	CD109	6	74512893	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36091	74512893	96602174	2771	71016											
CD109	135228	broad.mit.edu	37	chr6	74520922	74520922	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtagacaattctttatgcTggaatactgctttatttgta	8	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74520922	A	A	74520922	1	1	61	0	1	0	0	0	0	0	0	0	2993	1595	55	5		5	CD109	6	74520922	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	8029	74520922	96594145	2772	71017											
COL12A1	1303	broad.mit.edu	37	chr6	75798880	75798880	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacccctttcacctttctcTcctggcaaacctaaggaggg	8	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75798880	A	A	75798880	2	1	61	1	0	0	0	0	0	0	0	1	3701	1538	54	5		5	COL12A1	6	75798880	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1277958	75798880	95316187	2773	71018											
COL12A1	1303	broad.mit.edu	37	chr6	75804746	75804746	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcagagataacctaaatAtaacaaagctttgcagttct	6	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75804746	G	G	75804746	1	3	61	0	1	0	0	0	0	0	0	0	3701	464	16	5		5	COL12A1	6	75804746	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5866	75804746	95310321	2774	71019											
COL12A1	1303	broad.mit.edu	37	chr6	75840942	75840942	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagttatctccgtttatgtTtgttataaagattctcaaat	5	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75840942	A	A	75840942	1	1	61	0	1	0	0	0	0	0	0	0	3701	1856	64	5		5	COL12A1	6	75840942	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36196	75840942	95274125	2775	71020											
COL12A1	1303	broad.mit.edu	37	chr6	75843928	75843928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcttagagcacctttcTatcctagaaagtaacatctt	6	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75843928	A	A	75843928	1	1	61	0	1	0	0	0	0	0	0	0	3701	1537	53	5		5	COL12A1	6	75843928	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2986	75843928	95271139	2776	71021											
COL12A1	1303	broad.mit.edu	37	chr6	75856113	75856113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatataatccttcccattgcCccaaaaaatccaatttacat	1	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75856113	A	A	75856113	1	1	61	0	1	0	0	0	0	0	0	0	3701	638	22	2		2	COL12A1	6	75856113	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12185	75856113	95258954	2777	71022											
COL12A1	1303	broad.mit.edu	37	chr6	75898087	75898087	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctactcaccttcttctcCactaaccaattcaccaagtt	2	15	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75898087	T	T	75898087	3	4	61	1	0	0	0	0	1	0	0	0	3701	603	21	4	8439	4	COL12A1	6	75898087	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41974	75898087	95216980	2778	71023											
FILIP1	27145	broad.mit.edu	37	chr6	76124487	76124487	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagggatttcttagtttTtcgttcacattctccagatg	7	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76124487	A	A	76124487	4	1	61	1	0	0	0	0	0	1	0	0	5951	1850	64	5	3459	5	FILIP1	6	76124487	Nonsense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	226400	76124487	94990580	2779	71024											
MYO6	4646	broad.mit.edu	37	chr6	76624644	76624644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgggaacgctgtggagGcatccagtaccttcagaatg	12	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76624644	T	T	76624644	3	4	61	1	0	0	0	0	1	0	0	0	10175	1203	42	3	3907	3	MYO6	6	76624644	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	500157	76624644	94490423	2780	71025											
IMPG1	3617	broad.mit.edu	37	chr6	76660737	76660737	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgatcagtcagagagaagaTgcttgatgccataaagaaag	11	5	2	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76660737	A	A	76660737	3	1	61	1	0	0	0	0	1	0	0	0	7798	1464	51	5	1047	5	IMPG1	6	76660737	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36093	76660737	94454330	2781	71026											
IMPG1	3617	broad.mit.edu	37	chr6	76713660	76713660	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaggctggcagtgatccAgcaatttctatgggtaaaaa	10	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76713660	T	T	76713660	2	4	61	1	0	0	0	0	0	0	0	1	7798	175	7	5		5	IMPG1	6	76713660	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	52923	76713660	94401407	2782	71027											
HTR1B	3351	broad.mit.edu	37	chr6	78172293	78172293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccggattcgctgggcacGtcgggaacccgcgagttaat	14	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78172293	T	T	78172293	3	4	61	1	0	0	0	0	1	0	0	0	7507	1136	40	3	348	3	HTR1B	6	78172293	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1458633	78172293	92942774	2783	71028											
IRAK1BP1	134728	broad.mit.edu	37	chr6	79607447	79607447	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgttacatactataaaatGacctcatagtctggctatac	5	9	3	1	rs112867856		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79607447	T	T	79607447	1	4	61	0	1	0	0	0	0	0	0	0	7892	1305	45	3		3	IRAK1BP1	6	79607447	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1435154	79607447	91507620	2784	71029											
ELOVL4	6785	broad.mit.edu	37	chr6	80626596	80626596	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaatggtcacatggaatTgaatctgaaaaacagaaatg	9	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80626596	C	C	80626596	3	2	61	1	0	0	0	0	1	0	0	0	5118	1812	63	5	274	5	ELOVL4	6	80626596	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1019149	80626596	90488471	2785	71030											
TPBG	7162	broad.mit.edu	37	chr6	83075627	83075627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaacagaggtagtgcagGgcaaagaccggctcacctgt	14	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83075627	T	T	83075627	3	4	61	1	0	0	0	0	1	0	0	0	16518	1232	43	2	951	2	TPBG	6	83075627	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2449031	83075627	88039440	2786	71031											
SNAP91	9892	broad.mit.edu	37	chr6	84417451	84417451	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatggaccaagagcgcaggCcgcaccaccagcatcccagg	11	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84417451	G	G	84417451	1	3	61	0	1	0	0	0	0	0	0	0	14947	754	26	4		4	SNAP91	6	84417451	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1341824	84417451	86697616	2787	71032											
SNAP91	9892	broad.mit.edu	37	chr6	84417717	84417717	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggtccggctttaatccgcaGaccctaccctccaagcaccc	7	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84417717	T	T	84417717	1	4	61	0	1	0	0	0	0	0	0	0	14947	957	33	3		3	SNAP91	6	84417717	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	266	84417717	86697350	2788	71033											
TBX18	9096	broad.mit.edu	37	chr6	85399305	85399305	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttcctgagacttttgtTtcagttaggtgtgtgtgtgt	11	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85399305	C	C	85399305	1	2	61	0	1	0	0	0	0	0	0	0	15775	1856	64	5		5	TBX18	6	85399305	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	981588	85399305	85715762	2789	71034											
TBX18	9096	broad.mit.edu	37	chr6	85422391	85422391	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtcatggactgcatctgGggctccaattgaagaaccat	10	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85422391	T	T	85422391	1	4	61	0	1	0	0	0	0	0	0	0	15775	1247	43	2		2	TBX18	6	85422391	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23086	85422391	85692676	2790	71035											
TBX18	9096	broad.mit.edu	37	chr6	85466389	85466389	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtggctgtgccatctacaGatgcattagagaggccatct	11	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85466389	A	A	85466389	1	1	61	0	1	0	0	0	0	0	0	0	15775	957	33	4		4	TBX18	6	85466389	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43998	85466389	85648678	2791	71036											
TBX18	9096	broad.mit.edu	37	chr6	85472135	85472135	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accacggtctggggcctggtCccgtttgaccgaaaatgcta	12	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85472135	A	A	85472135	1	1	61	0	1	0	0	0	0	0	0	0	15775	870	30	3		3	TBX18	6	85472135	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5746	85472135	85642932	2792	71037											
SNX14	57231	broad.mit.edu	37	chr6	86223583	86223583	+	Missense_Mutation	SNP	C	A	A													tttgcttatcttggagagagCgaggttcagtgttttcacag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86223583	A	A	86223583	3	1	61	1	0	0	0	0	1	0	0	0	14999	768	27	3	268	3	SNX14	6	86223583	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	751448	86223583	84891484	2793	71038	326	2									
SNX14	57231	broad.mit.edu	37	chr6	86223586	86223586	+	Missense_Mutation	SNP	G	T	T													gcttatcttggagagagcgaGgttcagtgttttcacagaat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86223586	T	T	86223586	3	4	61	1	0	0	0	0	1	0	0	0	14999	1000	35	2	271	2	SNX14	6	86223586	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3	86223586	84891481	2794	71039	326	2									
HTR1E	3354	broad.mit.edu	37	chr6	87725089	87725089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccacagaggccagcatgGctataagacccaagaccatc	9	13	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87725089	T	T	87725089	3	4	61	1	0	0	0	0	1	0	0	0	7509	1203	42	3	39	3	HTR1E	6	87725089	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1501503	87725089	83389978	2795	71040											
GJB7	375519	broad.mit.edu	37	chr6	88009055	88009055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaataaatttggaagaaaGggtgtcctcacagtaaagga	11	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88009055	T	T	88009055	1	4	61	0	1	0	0	0	0	0	0	0	6477	1015	35	2		2	GJB7	6	88009055	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	283966	88009055	83106012	2796	71041											
C6orf162	57150	broad.mit.edu	37	chr6	88049910	88049910	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttatctacatgcaatacAagagaataaaaaggacctct	7	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88049910	T	T	88049910	3	4	61	1	0	0	0	0	1	0	0	0	2363	130	5	5	218	5	C6orf162	6	88049910	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	40855	88049910	83065157	2797	71042											
C6orf165	154313	broad.mit.edu	37	chr6	88136356	88136356	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatagcggtcccaacatcacAagtctttgtaagtatttgtc	8	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88136356	T	T	88136356	3	4	61	1	0	0	0	0	1	0	0	0	2364	130	5	5	979	5	C6orf165	6	88136356	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	86446	88136356	82978711	2798	71043											
SPACA1	81833	broad.mit.edu	37	chr6	88775996	88775997	+	Nonsense_Mutation	DNP	CC	AT	AT													aaagattcaacttctcttgaCcaattaccaacagaaatgcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	88775997	AT	AT	88775996	4	1	61	1	0	0	0	0	0	1	0	0	15086	506	18	3	854	3	SPACA1	6	88775996	Nonsense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	639640	88775996	82339071	2799	71044											
MDN1	23195	broad.mit.edu	37	chr6	90434913	90434913	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctatggcaacagcaaatCttacctgagtgaatctgtta	7	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90434913	A	A	90434913	1	1	61	0	1	0	0	0	0	0	0	0	9508	928	32	3		3	MDN1	6	90434913	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1658917	90434913	80680154	2800	71045											
MDN1	23195	broad.mit.edu	37	chr6	90503327	90503327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatatcaggggaaaagcCcaagatgaatttctttttaa	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90503327	A	A	90503327	1	1	61	0	1	0	0	0	0	0	0	0	9508	638	22	2		2	MDN1	6	90503327	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	68414	90503327	80611740	2801	71046											
CASP8AP2	9994	broad.mit.edu	37	chr6	90577112	90577112	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctagtttcaggggtggcttCtccatgtcctaaaatgatta	10	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90577112	T	T	90577112	3	4	61	1	0	0	0	0	1	0	0	0	2704	913	32	4	4129	4	CASP8AP2	6	90577112	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	73785	90577112	80537955	2802	71047											
GJA10	84694	broad.mit.edu	37	chr6	90605020	90605020	+	Frame_Shift_Del	DEL	A	-	-													gatttgctcttcattgcctgAaagaatctctccacttcaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90605020	-	-	90605020	7	5	61	1	0	1	0	1	0	0	0	0	6465	246	9	0	835	0	GJA10	6	90605020	Frame_Shift_Del	DEL	A	TCGA-17-Z031-01A-01W-0746-08	27908	90605020	80510047	2803	71048											
BACH2	60468	broad.mit.edu	37	chr6	90661200	90661200	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctgtgggcacgtcaggctCgggcagcagggcttcttcct	15	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90661200	A	A	90661200	4	1	61	1	0	0	0	0	0	1	0	0	1289	893	31	3	1912	3	BACH2	6	90661200	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	56180	90661200	80453867	2804	71049											
BACH2	60468	broad.mit.edu	37	chr6	90704634	90704634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgttctcatggctcttcGtatgtacacaccacttgcac	6	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90704634	T	T	90704634	1	4	61	0	1	0	0	0	0	0	0	0	1289	1160	40	3		3	BACH2	6	90704634	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43434	90704634	80410433	2805	71050											
BACH2	60468	broad.mit.edu	37	chr6	90778720	90778720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctttgattattttgcCttccttccttctttgcttcc	3	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90778720	A	A	90778720	1	1	61	0	1	0	0	0	0	0	0	0	1289	696	24	2		2	BACH2	6	90778720	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	74086	90778720	80336347	2806	71051											
EPHA7	2045	broad.mit.edu	37	chr6	93965499	93965500	+	Intron	DEL	AA	-	-													aggtcctgctttcgtggtagAaaaatcttaagaatatgaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93965500	-	-	93965499	6	5	61	0	1	1	0	1	0	0	0	0	5214	261	9	0		0	EPHA7	6	93965499	Intron	DEL	AA	TCGA-17-Z031-01A-01W-0746-08	3186779	93965499	77149568	2807	71052											
EPHA7	2045	broad.mit.edu	37	chr6	94120810	94120810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccgcagccagttgttttGgttgggctccatgacttggc	13	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94120810	T	T	94120810	3	4	61	1	0	0	0	0	1	0	0	0	5214	1357	47	2	2815	2	EPHA7	6	94120810	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	155311	94120810	76994257	2808	71053											
MANEA	79694	broad.mit.edu	37	chr6	96034506	96034506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattttgatttccaaaagaGtgacagaatcaacagtgaaa	7	5	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96034506	T	T	96034506	3	4	61	1	0	0	0	0	1	0	0	0	9313	1029	36	3	193	3	MANEA	6	96034506	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1913696	96034506	75080561	2809	71054											
FUT9	10690	broad.mit.edu	37	chr6	96651472	96651472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactccccaaaagagtggCattgagcacttgtttaacct	7	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96651472	A	A	96651472	2	1	61	1	0	0	0	0	0	0	0	1	6171	697	25	3		3	FUT9	6	96651472	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	616966	96651472	74463595	2810	71055											
KIAA0776	23376	broad.mit.edu	37	chr6	96999910	96999910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaatatgtacctaatgtGtctaatatatctaaatggct	7	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96999910	T	T	96999910	1	4	61	0	1	0	0	0	0	0	0	0	8263	1392	48	3		3	KIAA0776	6	96999910	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	348438	96999910	74115157	2811	71056											
POU3F2	5454	broad.mit.edu	37	chr6	99284136	99284136	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctccccttcggtccttgGccctttcccggccctcttgt	7	21	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99284136	T	T	99284136	1	4	61	0	1	0	0	0	0	0	0	0	12371	1218	42	3		3	POU3F2	6	99284136	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2284226	99284136	71830931	2812	71057											
C6orf168	84553	broad.mit.edu	37	chr6	99727531	99727531	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctctgccccatatttcccTggaaaatgtcctaagtcaaa	5	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99727531	A	A	99727531	1	1	61	0	1	0	0	0	0	0	0	0	2366	1595	55	5		5	C6orf168	6	99727531	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	443395	99727531	71387536	2813	71058											
C6orf168	84553	broad.mit.edu	37	chr6	99736994	99736994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtctctcatctacataccCagcctgctcagttgggcata	8	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99736994	A	A	99736994	1	1	61	0	1	0	0	0	0	0	0	0	2366	609	21	2		2	C6orf168	6	99736994	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9463	99736994	71378073	2814	71059											
MCHR2	84539	broad.mit.edu	37	chr6	100382457	100382457	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattacattaattggattagGaattggcttttgcagtttcc	8	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100382457	T	T	100382457	1	4	61	0	1	0	0	0	0	0	0	0	9476	1189	41	3		3	MCHR2	6	100382457	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	645463	100382457	70732610	2815	71060											
ASCC3	10973	broad.mit.edu	37	chr6	101090599	101090599	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatagggattgtaaatacCagtagttgggcttctttact	9	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101090599	A	A	101090599	2	1	61	1	0	0	0	0	0	0	0	1	1037	581	21	2		2	ASCC3	6	101090599	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	708142	101090599	70024468	2816	71061											
ASCC3	10973	broad.mit.edu	37	chr6	101215276	101215276	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaatgtgaaggacccataCaaatcattatgtgttaacat	6	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101215276	A	A	101215276	1	1	61	0	1	0	0	0	0	0	0	0	1037	493	17	3		3	ASCC3	6	101215276	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	124677	101215276	69899791	2817	71062											
GRIK2	2898	broad.mit.edu	37	chr6	102134198	102134198	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaggcacctccgaaaccCgattcaggtttgctggatgg	12	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102134198	A	A	102134198	2	1	61	1	0	0	0	0	0	0	0	1	6840	639	23	1		1	GRIK2	6	102134198	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	918922	102134198	68980869	2818	71063											
GRIK2	2898	broad.mit.edu	37	chr6	102180895	102180895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaagtccctaactctaCatactaccacattgggaaat	4	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102180895	A	A	102180895	1	1	61	0	1	0	0	0	0	0	0	0	6840	493	17	3		3	GRIK2	6	102180895	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	46697	102180895	68934172	2819	71064											
GRIK2	2898	broad.mit.edu	37	chr6	102247694	102247694	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagaagaacatctgccttGtctcttttgttgtcaagctg	10	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102247694	A	A	102247694	1	1	61	0	1	0	0	0	0	0	0	0	6840	1392	48	4		4	GRIK2	6	102247694	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66799	102247694	68867373	2820	71065											
GRIK2	2898	broad.mit.edu	37	chr6	102250160	102250160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgaaaaaatgtttattcCatctttcttcacttatttat	3	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102250160	A	A	102250160	1	1	61	0	1	0	0	0	0	0	0	0	6840	609	21	2		2	GRIK2	6	102250160	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2466	102250160	68864907	2821	71066											
HACE1	57531	broad.mit.edu	37	chr6	105239240	105239240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagttgagaggagaaaggTgtgcctaattttgaaagtga	14	3	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105239240	A	A	105239240	1	1	61	0	1	0	0	0	0	0	0	0	7006	1711	59	5		5	HACE1	6	105239240	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2989080	105239240	65875827	2822	71067											
POPDC3	64208	broad.mit.edu	37	chr6	105606629	105606629	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcagtgagggttacctAaaaaacacaagaccacacat	7	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105606629	G	G	105606629	1	3	61	0	1	0	0	0	0	0	0	0	12351	377	13	5		5	POPDC3	6	105606629	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	367389	105606629	65508438	2823	71068											
ATG5	9474	broad.mit.edu	37	chr6	106634247	106634247	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagaggtgatgcaaagtaaGaccagcccagttgccttatc	11	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106634247	T	T	106634247	1	4	61	0	1	0	0	0	0	0	0	0	1104	957	33	3		3	ATG5	6	106634247	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1027618	106634247	64480820	2824	71069											
SOBP	55084	broad.mit.edu	37	chr6	107955743	107955743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagaacttcattccgaaCgcccctggcgactccgcggc	13	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107955743	A	A	107955743	3	1	61	1	0	0	0	0	1	0	0	0	15026	535	19	3	1717	3	SOBP	6	107955743	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1321496	107955743	63159324	2825	71070											
SCML4	256380	broad.mit.edu	37	chr6	108066084	108066084	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctacaatggctccctccatAgtggaagggcagagacacct	11	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108066084	G	G	108066084	1	3	61	0	1	0	0	0	0	0	0	0	14024	435	15	5		5	SCML4	6	108066084	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	110341	108066084	63048983	2826	71071											
OSTM1	28962	broad.mit.edu	37	chr6	108372344	108372344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagttttgtatgcttcaCggcagtttttgcatacttct	8	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108372344	A	A	108372344	3	1	61	1	0	0	0	0	1	0	0	0	11392	536	19	3	342	3	OSTM1	6	108372344	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	306260	108372344	62742723	2827	71072											
LACE1	246269	broad.mit.edu	37	chr6	108843473	108843473	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatttgtgatagctttAttttaatttctttgttttat	4	3	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108843473	G	G	108843473	1	3	61	0	1	0	0	0	0	0	0	0	8667	464	16	5		5	LACE1	6	108843473	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	471129	108843473	62271594	2828	71073											
SESN1	27244	broad.mit.edu	37	chr6	109319696	109319696	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattagttttatgacaatcTcatgacaaataatacttaca	4	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109319696	G	G	109319696	1	3	61	0	1	0	0	0	0	0	0	0	14237	1566	54	5		5	SESN1	6	109319696	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	476223	109319696	61795371	2829	71074											
MICAL1	64780	broad.mit.edu	37	chr6	109771521	109771521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctccaccaggcagtccccCaccagtcccagcagcaggcg	9	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109771521	A	A	109771521	2	1	61	1	0	0	0	0	0	0	0	1	9662	581	21	2		2	MICAL1	6	109771521	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	451825	109771521	61343546	2830	71075											
AKD1	221264	broad.mit.edu	37	chr6	109819103	109819103	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtcttttggggatcatGtcagcagatgggagtggatg	16	5	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109819103	A	A	109819103	2	1	61	1	0	0	0	0	0	0	0	1	460	1368	48	4		4	AKD1	6	109819103	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47582	109819103	61295964	2831	71076											
AKD1	221264	broad.mit.edu	37	chr6	109954560	109954560	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atactacattaaaaatatggGcataaattttgctgaaatta	5	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109954560	C	C	109954560	1	2	61	0	1	0	0	0	0	0	0	0	460	1218	42	4		4	AKD1	6	109954560	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	135457	109954560	61160507	2832	71077											
GPR6	2830	broad.mit.edu	37	chr6	110300597	110300597	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaacgcgctggtggtGgcgctcatcgcgtccactcc	14	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110300597	T	T	110300597	2	4	61	1	0	0	0	0	0	0	0	1	6766	1335	47	2		2	GPR6	6	110300597	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	346037	110300597	60814470	2833	71078											
SLC16A10	117247	broad.mit.edu	37	chr6	111458827	111458827	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttgatgatatcaaaggcAcccctcccgaggaaatctca	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111458827	C	C	111458827	1	2	61	0	1	0	0	0	0	0	0	0	14516	174	6	5		5	SLC16A10	6	111458827	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1158230	111458827	59656240	2834	71079											
SLC16A10	117247	broad.mit.edu	37	chr6	111543326	111543326	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatagtaagaagcaaagagAgatcagtaaaaccactggaa	9	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111543326	T	T	111543326	3	4	61	1	0	0	0	0	1	0	0	0	14516	304	11	5	1458	5	SLC16A10	6	111543326	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	84499	111543326	59571741	2835	71080											
FYN	2534	broad.mit.edu	37	chr6	112185764	112185765	+	Intron	INS	-	GAT	GAT													acgaatcaggctatgatgagINSgatgatgatgaggtggtaat					rs139971631	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAT	112185765	GAT	GAT	112185764	6	5	61	0	1	1	1	0	0	0	0	0	6186	1015	35	0		0	FYN	6	112185764	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	642438	112185764	58929303	2836	71081											
WISP3	8838	broad.mit.edu	37	chr6	112386072	112386072	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggccattggatgcacacCtctgttcataccaaagctgg	11	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112386072	T	T	112386072	3	4	61	1	0	0	0	0	1	0	0	0	17501	681	24	4	525	4	WISP3	6	112386072	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	200308	112386072	58728995	2837	71082											
WISP3	8838	broad.mit.edu	37	chr6	112390860	112390860	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaagttagtcaatcctgtCatataataaaaaaattagtg	6	4	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112390860	A	A	112390860	1	1	61	0	1	0	0	0	0	0	0	0	17501	841	29	3		3	WISP3	6	112390860	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4788	112390860	58724207	2838	71083											
LAMA4	3910	broad.mit.edu	37	chr6	112460575	112460575	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccttttaacccattcttcTaacatcttctgtggacctta	4	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112460575	C	C	112460575	1	2	61	0	1	0	0	0	0	0	0	0	8680	1537	53	5		5	LAMA4	6	112460575	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	69715	112460575	58654492	2839	71084											
RWDD1	51389	broad.mit.edu	37	chr6	116892648	116892648	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggactctgcgcctgcgccCgcctggccgccgcccgctct	14	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116892648	T	T	116892648	1	4	61	0	1	0	0	0	0	0	0	0	13865	667	23	4		4	RWDD1	6	116892648	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4432073	116892648	54222419	2840	71085											
ZUFSP	221302	broad.mit.edu	37	chr6	116966866	116966866	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttcacatataaatattTagatacttacaagtttctcc	2	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116966866	A	A	116966866	1	1	61	0	1	0	0	0	0	0	0	0	18375	1769	61	5		5	ZUFSP	6	116966866	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	74218	116966866	54148201	2841	71086											
GPRC6A	222545	broad.mit.edu	37	chr6	117127867	117127867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagaaaggaatggaaagagGatatattccctcttctaaag	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117127867	T	T	117127867	3	4	61	1	0	0	0	0	1	0	0	0	6794	1174	41	3	1795	3	GPRC6A	6	117127867	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	161001	117127867	53987200	2842	71087											
RFX6	222546	broad.mit.edu	37	chr6	117243091	117243091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacatttatctgtctttcCctttcatgctatcaaagtat	3	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117243091	T	T	117243091	1	4	61	0	1	0	0	0	0	0	0	0	13375	638	22	4		4	RFX6	6	117243091	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	115224	117243091	53871976	2843	71088											
RFX6	222546	broad.mit.edu	37	chr6	117243247	117243247	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactgaaggatctccttaAgaagaatgccactgtggagg	12	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117243247	C	C	117243247	3	2	61	1	0	0	0	0	1	0	0	0	13375	72	3	5	1420	5	RFX6	6	117243247	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	156	117243247	53871820	2844	71089											
ROS1	6098	broad.mit.edu	37	chr6	117609876	117609876	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattctgtagcaagtaccaTatagtttaacccttctcggt	6	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117609876	A	A	117609876	3	1	61	1	0	0	0	0	1	0	0	0	13642	1406	49	5	224	5	ROS1	6	117609876	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	366629	117609876	53505191	2845	71090											
DCBLD1	285761	broad.mit.edu	37	chr6	117860647	117860647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattaataaaagacagtgaGgccaagcatggtggttcatg	11	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117860647	A	A	117860647	1	1	61	0	1	0	0	0	0	0	0	0	4313	1015	35	4		4	DCBLD1	6	117860647	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	250771	117860647	53254420	2846	71091											
DCBLD1	285761	broad.mit.edu	37	chr6	117890661	117890661	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactactttagaaacttcgtAgggaagtatacagtgttcaa	8	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117890661	T	T	117890661	1	4	61	0	1	0	0	0	0	0	0	0	4313	435	15	5		5	DCBLD1	6	117890661	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	30014	117890661	53224406	2847	71092											
SLC35F1	222553	broad.mit.edu	37	chr6	118292375	118292375	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtgcaagtccgaaatccAatagggcagtcattaaacct	8	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118292375	T	T	118292375	1	4	61	0	1	0	0	0	0	0	0	0	14702	145	5	5		5	SLC35F1	6	118292375	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	401714	118292375	52822692	2848	71093											
SLC35F1	222553	broad.mit.edu	37	chr6	118320325	118320325	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcaggccaacaatgccaAggccatgagtgcacgtgccg	13	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118320325	T	T	118320325	1	4	61	0	1	0	0	0	0	0	0	0	14702	87	3	5		5	SLC35F1	6	118320325	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	27950	118320325	52794742	2849	71094											
SLC35F1	222553	broad.mit.edu	37	chr6	118326696	118326696	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcccaattttagtctcatCttctccatgctgaaaccaca	4	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118326696	A	A	118326696	1	1	61	0	1	0	0	0	0	0	0	0	14702	928	32	3		3	SLC35F1	6	118326696	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6371	118326696	52788371	2850	71095											
SLC35F1	222553	broad.mit.edu	37	chr6	118421863	118421863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcacgtgagcctcagtGtccagagtttttattaatgt	9	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118421863	T	T	118421863	1	4	61	0	1	0	0	0	0	0	0	0	14702	1392	48	3		3	SLC35F1	6	118421863	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	95167	118421863	52693204	2851	71096											
SLC35F1	222553	broad.mit.edu	37	chr6	118453548	118453548	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgcatggtttcttgtcaaGaattcaagtgctggaattag	11	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118453548	T	T	118453548	1	4	61	0	1	0	0	0	0	0	0	0	14702	957	33	3		3	SLC35F1	6	118453548	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31685	118453548	52661519	2852	71097											
SLC35F1	222553	broad.mit.edu	37	chr6	118462773	118462773	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccactgtatcctcacatggcAgaaagagggcaagagagttc	11	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118462773	T	T	118462773	1	4	61	0	1	0	0	0	0	0	0	0	14702	203	7	5		5	SLC35F1	6	118462773	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9225	118462773	52652294	2853	71098											
C6orf204	387119	broad.mit.edu	37	chr6	118898050	118898052	+	Intron	DEL	CAT	-	-													ctggaatagattaaatattcCatctgcacgctaaacaaaag					rs57886944		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118898052	-	-	118898050	6	5	61	0	1	1	0	1	0	0	0	0	2376	609	21	0		0	C6orf204	6	118898050	Intron	DEL	CAT	TCGA-17-Z031-01A-01W-0746-08	435277	118898050	52217017	2854	71099											
C6orf204	387119	broad.mit.edu	37	chr6	118965648	118965648	+	Intron	DEL	C	-	-													gctccagcatttatacccaaCttcatattcaacatctcacc					rs34474283		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118965648	-	-	118965648	6	5	61	0	1	1	0	1	0	0	0	0	2376	580	20	0		0	C6orf204	6	118965648	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	67598	118965648	52149419	2855	71100											
FAM184A	79632	broad.mit.edu	37	chr6	119327527	119327527	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatactaattatatacaatgTgctgtttaaatagctctagg	6	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119327527	A	A	119327527	1	1	61	0	1	0	0	0	0	0	0	0	5557	1711	59	5		5	FAM184A	6	119327527	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	361879	119327527	51787540	2856	71101											
C6orf170	221322	broad.mit.edu	37	chr6	121530726	121530726	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtggtattatgtggtattTgtccttcctgtgtctggctt	11	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121530726	A	A	121530726	1	1	61	0	1	0	0	0	0	0	0	0	2367	1827	63	5		5	C6orf170	6	121530726	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2203199	121530726	49584341	2857	71102											
C6orf170	221322	broad.mit.edu	37	chr6	121642648	121642648	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtgaaagggtgtcatgatCtgactcattgttttaaagaa	12	4	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121642648	A	A	121642648	1	1	61	0	1	0	0	0	0	0	0	0	2367	928	32	3		3	C6orf170	6	121642648	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	111922	121642648	49472419	2858	71103											
GJA1	2697	broad.mit.edu	37	chr6	121768887	121768887	+	Frame_Shift_Del	DEL	C	-	-													gacagaaacaattcttcttgCcgcaattacaacaagcaagc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121768887	-	-	121768887	7	5	61	1	0	1	0	1	0	0	0	0	6464	747	26	0	896	0	GJA1	6	121768887	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	126239	121768887	49346180	2859	71104											
HSF2	3298	broad.mit.edu	37	chr6	122720843	122720843	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgccgccgctaccaccgcGttcgggtgtagaatttggaa	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122720843	T	T	122720843	1	4	61	0	1	0	0	0	0	0	0	0	7463	1160	40	3		3	HSF2	6	122720843	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	951956	122720843	48394224	2860	71105											
SERINC1	57515	broad.mit.edu	37	chr6	122776544	122776544	+	Intron	DEL	A	-	-													ggctagaatataaagcaggcAaaaaaaaaaagtgaaaagac					rs147850835		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122776544	-	-	122776544	6	5	61	0	1	1	0	1	0	0	0	0	14192	145	5	0		0	SERINC1	6	122776544	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	55701	122776544	48338523	2861	71106											
CLVS2	134829	broad.mit.edu	37	chr6	123384699	123384699	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatccacaattcataaatTtcttgatatagaggaaggga	7	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123384699	G	G	123384699	1	3	61	0	1	0	0	0	0	0	0	0	3604	1856	64	5		5	CLVS2	6	123384699	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	608155	123384699	47730368	2862	71107											
TRDN	10345	broad.mit.edu	37	chr6	123539850	123539850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatccatagccattgtaccCatccaagtagacacactgga	6	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123539850	A	A	123539850	3	1	61	1	0	0	0	0	1	0	0	0	16592	594	21	2	107	2	TRDN	6	123539850	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	155151	123539850	47575217	2863	71108											
TRDN	10345	broad.mit.edu	37	chr6	123545305	123545305	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaaaaggcacatagaaTcacagtcaatttttcagttt	6	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123545305	C	C	123545305	1	2	61	0	1	0	0	0	0	0	0	0	16592	1450	50	5		5	TRDN	6	123545305	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5455	123545305	47569762	2864	71109											
TRDN	10345	broad.mit.edu	37	chr6	123714767	123714767	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaagtgttttattgcttAccttgtgctgcaatttttac	6	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123714767	G	G	123714767	5	3	61	1	0	0	0	0	0	0	1	0	16592	405	14	5	1198	5	TRDN	6	123714767	Splice_Site	SNP	A	TCGA-17-Z031-01A-01W-0746-08	169462	123714767	47400300	2865	71110											
NKAIN2	154215	broad.mit.edu	37	chr6	124215813	124215813	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttgggggactttccaggaGatgaaaccgagaatcttgga	13	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124215813	T	T	124215813	1	4	61	0	1	0	0	0	0	0	0	0	10531	957	33	3		3	NKAIN2	6	124215813	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	501046	124215813	46899254	2866	71111											
NKAIN2	154215	broad.mit.edu	37	chr6	124777112	124777112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacttcccacaggagtcaCtatttttttcagtgaagtgc	9	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124777112	A	A	124777112	1	1	61	0	1	0	0	0	0	0	0	0	10531	580	20	3		3	NKAIN2	6	124777112	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	561299	124777112	46337955	2867	71112											
NKAIN2	154215	broad.mit.edu	37	chr6	124855399	124855399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgccttccaggctcaagCtttgcttatgcctcagcctc	7	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124855399	A	A	124855399	1	1	61	0	1	0	0	0	0	0	0	0	10531	812	28	3		3	NKAIN2	6	124855399	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	78287	124855399	46259668	2868	71113											
NKAIN2	154215	broad.mit.edu	37	chr6	125112599	125112599	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcaaagcatctcctttacTgcctcctacttagccttcct	4	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125112599	A	A	125112599	1	1	61	0	1	0	0	0	0	0	0	0	10531	1595	55	5		5	NKAIN2	6	125112599	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	257200	125112599	46002468	2869	71114											
NKAIN2	154215	broad.mit.edu	37	chr6	125117250	125117250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccaggggatgacagcaaCcctcagagcagagatcccaa	10	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125117250	A	A	125117250	1	1	61	0	1	0	0	0	0	0	0	0	10531	522	18	3		3	NKAIN2	6	125117250	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4651	125117250	45997817	2870	71115											
HEY2	23493	broad.mit.edu	37	chr6	126080920	126080920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaataaaccttaccgacCctgggggacagaagttggag	11	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126080920	A	A	126080920	3	1	61	1	0	0	0	0	1	0	0	0	7146	623	22	2	1004	2	HEY2	6	126080920	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	963670	126080920	45034147	2871	71116											
C6orf58	352999	broad.mit.edu	37	chr6	127898552	127898552	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatcagacagccaggtaTtttgcaaaatttgcaccaga	8	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127898552	G	G	127898552	4	3	61	1	0	0	0	0	0	1	0	0	2391	1500	52	5	224	5	C6orf58	6	127898552	Nonsense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1817632	127898552	43216515	2872	71117											
PTPRK	5796	broad.mit.edu	37	chr6	128327087	128327087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgaaatgtcaccaaaaTtgcaagcattctgttttgtt	6	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128327087	C	C	128327087	1	2	61	0	1	0	0	0	0	0	0	0	12913	1508	52	5		5	PTPRK	6	128327087	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	428535	128327087	42787980	2873	71118											
PTPRK	5796	broad.mit.edu	37	chr6	128329214	128329214	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtttctaatgcagatgtgTcttctccaacatatatatct	5	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128329214	A	A	128329214	1	1	61	0	1	0	0	0	0	0	0	0	12913	1682	58	5		5	PTPRK	6	128329214	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2127	128329214	42785853	2874	71119											
PTPRK	5796	broad.mit.edu	37	chr6	128330150	128330150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagactcaggtgctgacaaCattgttaaaattaaaatttt	6	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128330150	A	A	128330150	1	1	61	0	1	0	0	0	0	0	0	0	12913	493	17	3		3	PTPRK	6	128330150	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	936	128330150	42784917	2875	71120											
PTPRK	5796	broad.mit.edu	37	chr6	128643579	128643579	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagactgttttccagaacAcagccacagaaatacatcaa	5	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128643579	C	C	128643579	1	2	61	0	1	0	0	0	0	0	0	0	12913	174	6	5		5	PTPRK	6	128643579	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	313429	128643579	42471488	2876	71121											
LAMA2	3908	broad.mit.edu	37	chr6	129601214	129601214	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatcaacatagctttagccCaacgtgccatttagaccgga	7	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129601214	G	G	129601214	3	3	61	1	0	0	0	0	1	0	0	0	8678	594	21	4	2529	4	LAMA2	6	129601214	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	957635	129601214	41513853	2877	71122											
LAMA2	3908	broad.mit.edu	37	chr6	129618940	129618940	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacaatgttggtgccaaccTggagtcacagggaagaaatg	14	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129618940	C	C	129618940	2	2	61	1	0	0	0	0	0	0	0	1	8678	1567	55	5		5	LAMA2	6	129618940	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17726	129618940	41496127	2878	71123											
LAMA2	3908	broad.mit.edu	37	chr6	129649588	129649588	+	Intron	DEL	C	-	-													gagccttccttgaacaaggtCcatgtgctcattcctcttta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129649588	-	-	129649588	6	5	61	0	1	1	0	1	0	0	0	0	8678	870	30	0		0	LAMA2	6	129649588	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	30648	129649588	41465479	2879	71124											
LAMA2	3908	broad.mit.edu	37	chr6	129687532	129687532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgcagtcacaagcaagGgccagggacaaggtgacaga	15	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129687532	T	T	129687532	1	4	61	0	1	0	0	0	0	0	0	0	8678	1247	43	2		2	LAMA2	6	129687532	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37944	129687532	41427535	2880	71125											
LAMA2	3908	broad.mit.edu	37	chr6	129802528	129802528	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagtccggcatcattcttTtgggaagtggagggacacca	13	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129802528	C	C	129802528	2	2	61	1	0	0	0	0	0	0	0	1	8678	1838	64	5		5	LAMA2	6	129802528	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	114996	129802528	41312539	2881	71126											
LAMA2	3908	broad.mit.edu	37	chr6	129835579	129835579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctatgatgctggggttcCagggcatttgtgtgatggac	15	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129835579	A	A	129835579	3	1	61	1	0	0	0	0	1	0	0	0	8678	594	21	2	9304	2	LAMA2	6	129835579	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33051	129835579	41279488	2882	71127											
C6orf191	253582	broad.mit.edu	37	chr6	130154670	130154670	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcccaaacccattcttccAcaactggaacaaaaaacaat	2	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130154670	G	G	130154670	3	3	61	1	0	0	0	0	1	0	0	0	2371	159	6	5	140	5	C6orf191	6	130154670	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	319091	130154670	40960397	2883	71128											
C6orf191	253582	broad.mit.edu	37	chr6	130182488	130182488	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattggattacgcaaaacgaGacagatgccatctgtgagcc	11	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130182488	C	C	130182488	1	2	61	0	1	0	0	0	0	0	0	0	2371	957	33	4		4	C6orf191	6	130182488	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	27818	130182488	40932579	2884	71129											
L3MBTL3	84456	broad.mit.edu	37	chr6	130425506	130425506	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtatcctgtcattttaattgGaagaagtatggcctaatgga	10	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130425506	T	T	130425506	1	4	61	0	1	0	0	0	0	0	0	0	8665	1189	41	3		3	L3MBTL3	6	130425506	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	243018	130425506	40689561	2885	71130											
L3MBTL3	84456	broad.mit.edu	37	chr6	130454809	130454809	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgacaccagatacaggatTactggcttaagaggtgtgga	12	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130454809	A	A	130454809	1	1	61	0	1	0	0	0	0	0	0	0	8665	1769	61	5		5	L3MBTL3	6	130454809	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29303	130454809	40660258	2886	71131											
SAMD3	154075	broad.mit.edu	37	chr6	130467437	130467437	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgctggtttacactaaGtactcaatattttagaagtt	7	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130467437	C	C	130467437	1	2	61	0	1	0	0	0	0	0	0	0	13931	1044	36	4		4	SAMD3	6	130467437	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12628	130467437	40647630	2887	71132											
SAMD3	154075	broad.mit.edu	37	chr6	130505333	130505333	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctgggtgctggggtacCtgttcaccaaaacaaggagg	14	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130505333	A	A	130505333	5	1	61	1	0	0	0	0	0	0	1	0	13931	695	24	2	1033	2	SAMD3	6	130505333	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37896	130505333	40609734	2888	71133											
SAMD3	154075	broad.mit.edu	37	chr6	130535713	130535713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttctacatgactttccgGcaaaacacaggcattctgaa	7	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130535713	T	T	130535713	1	4	61	0	1	0	0	0	0	0	0	0	13931	1218	42	3		3	SAMD3	6	130535713	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30380	130535713	40579354	2889	71134											
TMEM200A	114801	broad.mit.edu	37	chr6	130724992	130724992	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcaacctcaagtaggccCcagtgtgtgttgttcctctc	8	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130724992	A	A	130724992	1	1	61	0	1	0	0	0	0	0	0	0	16246	638	22	2		2	TMEM200A	6	130724992	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	189279	130724992	40390075	2890	71135											
TMEM200A	114801	broad.mit.edu	37	chr6	130734868	130734868	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatatctgcatatcagaTtgtgtcacaatccagcttaa	7	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130734868	C	C	130734868	1	2	61	0	1	0	0	0	0	0	0	0	16246	1508	52	5		5	TMEM200A	6	130734868	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9876	130734868	40380199	2891	71136											
EPB41L2	2037	broad.mit.edu	37	chr6	131277553	131277553	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctacttctttaggtttttCcttggttgcatctgttccta	7	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131277553	T	T	131277553	3	4	61	1	0	0	0	0	1	0	0	0	5195	864	30	4	3016	4	EPB41L2	6	131277553	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	542685	131277553	39837514	2892	71137											
ENPP3	5169	broad.mit.edu	37	chr6	131996593	131996593	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatctcttgcctgtattaActgcagttgcctctttactc	6	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131996593	T	T	131996593	1	4	61	0	1	0	0	0	0	0	0	0	5173	58	2	5		5	ENPP3	6	131996593	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	719040	131996593	39118474	2893	71138											
ENPP3	5169	broad.mit.edu	37	chr6	131998973	131998973	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtatgtttatagcaaaTtgataatatatttctgtttc	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131998973	C	C	131998973	1	2	61	0	1	0	0	0	0	0	0	0	5173	1508	52	5		5	ENPP3	6	131998973	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2380	131998973	39116094	2894	71139											
ENPP1	5167	broad.mit.edu	37	chr6	132181434	132181434	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attataattccatgtagcttCagttatcggtttctttttga	6	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132181434	A	A	132181434	1	1	61	0	1	0	0	0	0	0	0	0	5171	841	29	3		3	ENPP1	6	132181434	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	182461	132181434	38933633	2895	71140											
MOXD1	26002	broad.mit.edu	37	chr6	132694056	132694056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgcaaactcttggtgccCctattggagtcatggtactt	9	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132694056	A	A	132694056	3	1	61	1	0	0	0	0	1	0	0	0	9814	622	22	2	1389	2	MOXD1	6	132694056	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	512622	132694056	38421011	2896	71141											
MOXD1	26002	broad.mit.edu	37	chr6	132695680	132695680	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatattagaaaaaagacTatatgacttgtttctcttat	4	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132695680	C	C	132695680	1	2	61	0	1	0	0	0	0	0	0	0	9814	1537	53	5		5	MOXD1	6	132695680	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1624	132695680	38419387	2897	71142											
TAAR8	83551	broad.mit.edu	37	chr6	132873854	132873854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagcaatttttcccaacCtgttgtgcagctttgctatg	8	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132873854	A	A	132873854	3	1	61	1	0	0	0	0	1	0	0	0	15612	681	24	2	25	2	TAAR8	6	132873854	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	178174	132873854	38241213	2898	71143											
EYA4	2070	broad.mit.edu	37	chr6	133703378	133703378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggataataatgaaataCactatttagtactgtatgct	7	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133703378	A	A	133703378	1	1	61	0	1	0	0	0	0	0	0	0	5374	493	17	3		3	EYA4	6	133703378	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	829524	133703378	37411689	2899	71144											
EYA4	2070	broad.mit.edu	37	chr6	133744192	133744192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttttggagggtgagtgGctagatatgggcgatgggga	18	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133744192	T	T	133744192	1	4	61	0	1	0	0	0	0	0	0	0	5374	1218	42	3		3	EYA4	6	133744192	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40814	133744192	37370875	2900	71145											
EYA4	2070	broad.mit.edu	37	chr6	133802754	133802754	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtatgcctactcattcTtaaagattgtagtgtgatgc	11	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133802754	G	G	133802754	1	3	61	0	1	0	0	0	0	0	0	0	5374	1624	56	5		5	EYA4	6	133802754	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	58562	133802754	37312313	2901	71146											
EYA4	2070	broad.mit.edu	37	chr6	133810842	133810842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaaatactttcccagaCaaacaaaaactgagtgattt	7	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133810842	A	A	133810842	1	1	61	0	1	0	0	0	0	0	0	0	5374	493	17	3		3	EYA4	6	133810842	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8088	133810842	37304225	2902	71147											
EYA4	2070	broad.mit.edu	37	chr6	133821516	133821516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactataaccctacttttcCataacgcctctctatccttt	1	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133821516	A	A	133821516	1	1	61	0	1	0	0	0	0	0	0	0	5374	609	21	2		2	EYA4	6	133821516	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10674	133821516	37293551	2903	71148											
EYA4	2070	broad.mit.edu	37	chr6	133850080	133850080	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaataaaaattccagaatGaagaattcagattgctgaat	8	4	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133850080	T	T	133850080	1	4	61	0	1	0	0	0	0	0	0	0	5374	1305	45	3		3	EYA4	6	133850080	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	28564	133850080	37264987	2904	71149											
TCF21	6943	broad.mit.edu	37	chr6	134210962	134210962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacgacaaatacgagaacGggtacattcacccggtcaac	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134210962	T	T	134210962	3	4	61	1	0	0	0	0	1	0	0	0	15813	1116	39	1	429	1	TCF21	6	134210962	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	360882	134210962	36904105	2905	71150											
SGK1	6446	broad.mit.edu	37	chr6	134494448	134494448	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgctttcttctgtaaaacTttgactgcatagaacacttc	5	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134494448	G	G	134494448	3	3	61	1	0	0	0	0	1	0	0	0	14320	1606	56	5	946	5	SGK1	6	134494448	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	283486	134494448	36620619	2906	71151											
SGK1	6446	broad.mit.edu	37	chr6	134495124	134495124	+	Intron	DEL	G	-	-													acagttctccacagatgcacGgcacatacaaaaacttactg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134495124	-	-	134495124	6	5	61	0	1	1	0	1	0	0	0	0	14320	1131	39	0		0	SGK1	6	134495124	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	676	134495124	36619943	2907	71152											
MYB	4602	broad.mit.edu	37	chr6	135520132	135520132	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcattggtcacaaattgacTgttacaacaccatttcatag	5	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135520132	A	A	135520132	2	1	61	1	0	0	0	0	0	0	0	1	10101	1567	55	5		5	MYB	6	135520132	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1025008	135520132	35594935	2908	71153											
PDE7B	27115	broad.mit.edu	37	chr6	136291585	136291586	+	Intron	INS	-	TCC	TCC													tggggcaaaattatgtggggINStctaggccagtgcttctgaa					rs111762075		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCC	136291586	TCC	TCC	136291585	6	5	61	0	1	1	1	0	0	0	0	0	11746	1276	44	0		0	PDE7B	6	136291585	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	771453	136291585	34823482	2909	71154											
PDE7B	27115	broad.mit.edu	37	chr6	136409615	136409615	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcctagaaggagaaaaaGcagggacacattaaaagtct	11	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136409615	C	C	136409615	1	2	61	0	1	0	0	0	0	0	0	0	11746	986	34	4		4	PDE7B	6	136409615	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	118030	136409615	34705452	2910	71155											
PDE7B	27115	broad.mit.edu	37	chr6	136429780	136429780	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatttttctcctgacatcTggggttggtttcattgagga	10	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136429780	A	A	136429780	1	1	61	0	1	0	0	0	0	0	0	0	11746	1595	55	5		5	PDE7B	6	136429780	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	20165	136429780	34685287	2911	71156											
KIAA1244	57221	broad.mit.edu	37	chr6	138540690	138540690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaggaaggggccacctgGgctgaatgcagaaaggtgtg	17	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138540690	T	T	138540690	1	4	61	0	1	0	0	0	0	0	0	0	8287	1247	43	2		2	KIAA1244	6	138540690	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2110910	138540690	32574377	2912	71157											
KIAA1244	57221	broad.mit.edu	37	chr6	138611183	138611183	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggctgtggcaggtggagaGgggtggccttaagagcctgc	20	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138611183	C	C	138611183	1	2	61	0	1	0	0	0	0	0	0	0	8287	1015	35	4		4	KIAA1244	6	138611183	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	70493	138611183	32503884	2913	71158											
HIVEP2	3097	broad.mit.edu	37	chr6	143091672	143091672	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccaaatggggtacttctCcaagcccgcatgctgcccca	8	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143091672	A	A	143091672	4	1	61	1	0	0	0	0	0	1	0	0	7254	864	30	3	3160	3	HIVEP2	6	143091672	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4480489	143091672	28023395	2914	71159											
AIG1	51390	broad.mit.edu	37	chr6	143486448	143486448	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttggaaggttataatgggaGattaaaattagagaatactg	11	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143486448	T	T	143486448	1	4	61	0	1	0	0	0	0	0	0	0	429	957	33	3		3	AIG1	6	143486448	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	394776	143486448	27628619	2915	71160											
AIG1	51390	broad.mit.edu	37	chr6	143654272	143654272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagcaaccaagtttccaGtagctcctgagtatcagaag	8	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143654272	T	T	143654272	1	4	61	0	1	0	0	0	0	0	0	0	429	1044	36	3		3	AIG1	6	143654272	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	167824	143654272	27460795	2916	71161											
LTV1	84946	broad.mit.edu	37	chr6	144164468	144164468	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattggtccgtttccacggcCggctgggtgacgttatcgcc	14	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144164468	T	T	144164468	1	4	61	0	1	0	0	0	0	0	0	0	9168	667	23	4		4	LTV1	6	144164468	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	510196	144164468	26950599	2917	71162											
UTRN	7402	broad.mit.edu	37	chr6	144806607	144806607	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggaagagcggatgaagagCacagaggtcctgcctgagaa	15	7	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144806607	T	T	144806607	2	4	61	1	0	0	0	0	0	0	0	1	17230	709	25	4		4	UTRN	6	144806607	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	642139	144806607	26308460	2918	71163											
UTRN	7402	broad.mit.edu	37	chr6	144852162	144852162	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggaaaatttggaaacctAttttattttgtgtattgtcc	7	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144852162	T	T	144852162	1	4	61	0	1	0	0	0	0	0	0	0	17230	464	16	5		5	UTRN	6	144852162	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	45555	144852162	26262905	2919	71164											
UTRN	7402	broad.mit.edu	37	chr6	144871969	144871969	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatgcactcattttctgcCacgttgctgatgcttcacta	6	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144871969	T	T	144871969	1	4	61	0	1	0	0	0	0	0	0	0	17230	609	21	4		4	UTRN	6	144871969	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19807	144871969	26243098	2920	71165											
GRM1	2911	broad.mit.edu	37	chr6	146480564	146480564	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatcgcccattctgacaaaAtctacagcaacgctggggag	10	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146480564	C	C	146480564	3	2	61	1	0	0	0	0	1	0	0	0	6862	101	4	5	787	5	GRM1	6	146480564	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1608595	146480564	24634503	2921	71166											
GRM1	2911	broad.mit.edu	37	chr6	146720932	146720933	+	Intron	DNP	CT	TA	TA													tctctgtctctcatatcttcCtctagttttctgagttgtct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	146720933	TA	TA	146720932	1	4	61	0	1	0	0	0	0	0	0	0	6862	696	24	4		4	GRM1	6	146720932	Intron	DNP	CT	TCGA-17-Z031-01A-01W-0746-08	240368	146720932	24394135	2922	71167											
SASH1	23328	broad.mit.edu	37	chr6	148795358	148795359	+	Splice_Site	DNP	GG	TT	TT													attgaggaagcacttgctagGgtaagcatgcagatacctgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	148795359	TT	TT	148795358	5	4	61	1	0	0	0	0	0	0	1	0	13960	1246	43	2	653	2	SASH1	6	148795358	Splice_Site	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	2074426	148795358	22319709	2923	71168											
LATS1	9113	broad.mit.edu	37	chr6	150018289	150018289	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaatggcttagtaagacTaatgggtgaacaggctactg	13	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150018289	A	A	150018289	1	1	61	0	1	0	0	0	0	0	0	0	8718	1537	53	5		5	LATS1	6	150018289	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1222931	150018289	21096778	2924	71169											
NUP43	348995	broad.mit.edu	37	chr6	150064774	150064774	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaactaaagttctttacCtggttatttggatggtgaag	9	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150064774	G	G	150064774	3	3	61	1	0	0	0	0	1	0	0	0	10860	695	24	4	845	4	NUP43	6	150064774	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	46485	150064774	21050293	2925	71170											
ZBTB2	57621	broad.mit.edu	37	chr6	151688152	151688152	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctatccttgatttttagtaAgtttcatgaaaatgggatga	8	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151688152	C	C	151688152	1	2	61	0	1	0	0	0	0	0	0	0	17654	87	3	5		5	ZBTB2	6	151688152	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1623378	151688152	19426915	2926	71171											
C6orf97	80129	broad.mit.edu	37	chr6	151939225	151939225	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttacctgtgcctgcctcaaAgatgtgactactgggcaaga	11	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151939225	T	T	151939225	3	4	61	1	0	0	0	0	1	0	0	0	2399	69	3	5	2133	5	C6orf97	6	151939225	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	251073	151939225	19175842	2927	71172											
ESR1	2099	broad.mit.edu	37	chr6	152045322	152045322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggactgaaagcagaattgGtgtaaagtctttaaaaggag	13	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152045322	T	T	152045322	1	4	61	0	1	0	0	0	0	0	0	0	5298	1276	44	3		3	ESR1	6	152045322	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	106097	152045322	19069745	2928	71173											
ESR1	2099	broad.mit.edu	37	chr6	152372717	152372717	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctttctcttaggctgtcttCccccatctctcctctccctc	3	19	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152372717	A	A	152372717	1	1	61	0	1	0	0	0	0	0	0	0	5298	870	30	3		3	ESR1	6	152372717	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	327395	152372717	18742350	2929	71174											
SYNE1	23345	broad.mit.edu	37	chr6	152690363	152690363	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcaacactggcaggcagtCcgtgtaccctggaggcttta	11	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152690363	A	A	152690363	1	1	61	0	1	0	0	0	0	0	0	0	15564	870	30	3		3	SYNE1	6	152690363	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	317646	152690363	18424704	2930	71175											
SYNE1	23345	broad.mit.edu	37	chr6	152706953	152706953	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgatctttcacaatctcTtccactttcctcattttttc	2	12	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152706953	A	A	152706953	3	1	61	1	0	0	0	0	1	0	0	0	15564	1606	56	5	18326	5	SYNE1	6	152706953	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16590	152706953	18408114	2931	71176											
SYNE1	23345	broad.mit.edu	37	chr6	152765658	152765658	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaattcttcgagagaatttTtgactatttctttgtactgg	7	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152765658	G	G	152765658	3	3	61	1	0	0	0	0	1	0	0	0	15564	1841	64	5	23209	5	SYNE1	6	152765658	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	58705	152765658	18349409	2932	71177											
SYNE1	23345	broad.mit.edu	37	chr6	152771934	152771934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgtaaccttttctcaCagagatgatgaggacctttg	10	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152771934	A	A	152771934	3	1	61	1	0	0	0	0	1	0	0	0	15564	478	17	3	23725	3	SYNE1	6	152771934	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6276	152771934	18343133	2933	71178											
SYNE1	23345	broad.mit.edu	37	chr6	152782765	152782765	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctttgagctttgacatggtCgcaaacatttcttttccttc	6	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152782765	G	G	152782765	2	3	61	1	0	0	0	0	0	0	0	1	15564	871	31	4		4	SYNE1	6	152782765	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10831	152782765	18332302	2934	71179											
SYNE1	23345	broad.mit.edu	37	chr6	152784418	152784418	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctctaaaaatagcattctCtctaaacagactacttatca	3	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152784418	A	A	152784418	1	1	61	0	1	0	0	0	0	0	0	0	15564	928	32	3		3	SYNE1	6	152784418	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1653	152784418	18330649	2935	71180											
OPRM1	4988	broad.mit.edu	37	chr6	154412236	154412236	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcgcctcaagagtgtcCgcatgctctctggctccaaa	9	14	3	1	rs17174822	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154412236	T	T	154412236	3	4	61	1	0	0	0	0	1	0	0	0	10981	652	23	4	1137	4	OPRM1	6	154412236	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1627818	154412236	16702831	2936	71181											
OPRM1	4988	broad.mit.edu	37	chr6	154439662	154439662	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcataatgtctgaagagattGattaatgtcttgacatttaa	7	4	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154439662	T	T	154439662	1	4	61	0	1	0	0	0	0	0	0	0	10981	1305	45	3		3	OPRM1	6	154439662	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	27426	154439662	16675405	2937	71182											
IPCEF1	26034	broad.mit.edu	37	chr6	154489289	154489289	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcagtaacaataaacccaGtgaaaaatcaaggagagaac	8	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154489289	A	A	154489289	1	1	61	0	1	0	0	0	0	0	0	0	7861	1044	36	4		4	IPCEF1	6	154489289	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49627	154489289	16625778	2938	71183											
CNKSR3	154043	broad.mit.edu	37	chr6	154763079	154763079	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaggaatcctaaaatctaCcactgatcgaggactcctta	6	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154763079	G	G	154763079	1	3	61	0	1	0	0	0	0	0	0	0	3640	522	18	4		4	CNKSR3	6	154763079	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	273790	154763079	16351988	2939	71184											
RBM16	22828	broad.mit.edu	37	chr6	155153580	155153580	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acggggaatcccacccccatCggtacttgattcagctcttc	8	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155153580	T	T	155153580	3	4	61	1	0	0	0	0	1	0	0	0	13226	893	31	4	2945	4	RBM16	6	155153580	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	390501	155153580	15961487	2940	71185											
NOX3	50508	broad.mit.edu	37	chr6	155730720	155730720	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaatacctcttccatcTgtcccttctgttcttgtcat	3	14	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155730720	A	A	155730720	1	1	61	0	1	0	0	0	0	0	0	0	10652	1595	55	5		5	NOX3	6	155730720	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	577140	155730720	15384347	2941	71186											
NOX3	50508	broad.mit.edu	37	chr6	155764331	155764331	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttattaaaagcttttcaaTatagcgttcctgattagagg	7	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155764331	C	C	155764331	1	2	61	0	1	0	0	0	0	0	0	0	10652	1421	49	5		5	NOX3	6	155764331	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	33611	155764331	15350736	2942	71187											
C6orf35	729515	broad.mit.edu	37	chr6	157721107	157721107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggacaggaaattcgctcCtgccgagctcactctccggc	11	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157721107	A	A	157721107	1	1	61	0	1	0	0	0	0	0	0	0	2386	696	24	2		2	C6orf35	6	157721107	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1956776	157721107	13393960	2943	71188											
SYNJ2	8871	broad.mit.edu	37	chr6	158438832	158438832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggggaggtcaaggtgaGtgttgcctggttgtcacctg	18	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158438832	T	T	158438832	1	4	61	0	1	0	0	0	0	0	0	0	15572	1044	36	3		3	SYNJ2	6	158438832	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	717725	158438832	12676235	2944	71189											
SYNJ2	8871	broad.mit.edu	37	chr6	158497793	158497793	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgctgtggtggaggaagAaacatccctttgataaaaca	13	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158497793	G	G	158497793	3	3	61	1	0	0	0	0	1	0	0	0	15572	247	9	5	2494	5	SYNJ2	6	158497793	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	58961	158497793	12617274	2945	71190											
TULP4	56995	broad.mit.edu	37	chr6	158873181	158873181	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatggtccggcagcatAtcccatcccagtgcagaaca	10	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158873181	G	G	158873181	3	3	61	1	0	0	0	0	1	0	0	0	16902	449	16	5	758	5	TULP4	6	158873181	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	375388	158873181	12241886	2946	71191											
TULP4	56995	broad.mit.edu	37	chr6	158882789	158882789	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttctctggaaacaagtacAttttcagcagtatactagtg	8	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158882789	G	G	158882789	1	3	61	0	1	0	0	0	0	0	0	0	16902	232	8	5		5	TULP4	6	158882789	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9608	158882789	12232278	2947	71192											
RSPH3	83861	broad.mit.edu	37	chr6	159403567	159403567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagtcgttgaacttcagCacgttcactattccgtagtt	7	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159403567	A	A	159403567	3	1	61	1	0	0	0	0	1	0	0	0	13816	710	25	3	626	3	RSPH3	6	159403567	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	520778	159403567	11711500	2948	71193											
TAGAP	117289	broad.mit.edu	37	chr6	159457474	159457474	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcttgcgatttcccagaGcccgcgctgaggtttttggt	12	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159457474	T	T	159457474	2	4	61	1	0	0	0	0	0	0	0	1	15656	958	34	3		3	TAGAP	6	159457474	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	53907	159457474	11657593	2949	71194											
TAGAP	117289	broad.mit.edu	37	chr6	159459194	159459194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagaagtgatactggaatGcactggaatgttctccccaa	9	9	2	2	rs112913154	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159459194	T	T	159459194	3	4	61	1	0	0	0	0	1	0	0	0	15656	1319	46	3	1353	3	TAGAP	6	159459194	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1720	159459194	11655873	2950	71195											
FNDC1	84624	broad.mit.edu	37	chr6	159642550	159642550	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggggaggaggaatgcagAacccccgctccagccccagg	15	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159642550	T	T	159642550	1	4	61	0	1	0	0	0	0	0	0	0	6026	261	9	5		5	FNDC1	6	159642550	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	183356	159642550	11472517	2951	71196											
FNDC1	84624	broad.mit.edu	37	chr6	159647539	159647546	+	Frame_Shift_Del	DEL	GCCAGTCA	-	-													cctgaaaacttgaacgtctgGccagtcaatggcaaacctac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159647546	-	-	159647539	7	5	61	1	0	1	0	1	0	0	0	0	6026	1212	42	0	1141	0	FNDC1	6	159647539	Frame_Shift_Del	DEL	GCCAGTCA	TCGA-17-Z031-01A-01W-0746-08	4989	159647539	11467528	2952	71197											
FNDC1	84624	broad.mit.edu	37	chr6	159652896	159652896	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttctttgacaggcaattCtttaaaatctgttgcagcca	6	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159652896	G	G	159652896	1	3	61	0	1	0	0	0	0	0	0	0	6026	928	32	4		4	FNDC1	6	159652896	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5357	159652896	11462171	2953	71198											
WTAP	9589	broad.mit.edu	37	chr6	160157395	160157395	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggcttttttaagcactttAaaaaaaaatagacttgaagg	9	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160157395	T	T	160157395	1	4	61	0	1	0	0	0	0	0	0	0	17536	377	13	5		5	WTAP	6	160157395	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	504499	160157395	10957672	2954	71199											
WTAP	9589	broad.mit.edu	37	chr6	160176694	160176694	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttaatttgggagaggataCtgtccagaaaattaatgcat	9	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160176694	G	G	160176694	1	3	61	0	1	0	0	0	0	0	0	0	17536	580	20	4		4	WTAP	6	160176694	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19299	160176694	10938373	2955	71200											
SLC22A1	6580	broad.mit.edu	37	chr6	160557545	160557545	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctctgctcatgacagcgtGagtgtggctgatgctctccc	13	12	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160557545	C	C	160557545	1	2	61	0	1	0	0	0	0	0	0	0	14553	1305	45	4		4	SLC22A1	6	160557545	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	380851	160557545	10557522	2956	71201											
SLC22A2	6582	broad.mit.edu	37	chr6	160645597	160645597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttactaatttttttgatGctttcaagtctttgatttag	5	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160645597	T	T	160645597	1	4	61	0	1	0	0	0	0	0	0	0	14564	1334	46	3		3	SLC22A2	6	160645597	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	88052	160645597	10469470	2957	71202											
SLC22A2	6582	broad.mit.edu	37	chr6	160662577	160662577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatggcgtgatgatgccaCcaatgtcacacattgaggaa	12	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160662577	A	A	160662577	3	1	61	1	0	0	0	0	1	0	0	0	14564	507	18	3	249	3	SLC22A2	6	160662577	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16980	160662577	10452490	2958	71203											
SLC22A2	6582	broad.mit.edu	37	chr6	160663500	160663500	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcttcagacagtgctccaGagtgggactgtaaggacaaa	11	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160663500	T	T	160663500	1	4	61	0	1	0	0	0	0	0	0	0	14564	957	33	3		3	SLC22A2	6	160663500	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	923	160663500	10451567	2959	71204											
LPA	4018	broad.mit.edu	37	chr6	160961173	160961173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcgaggttcacttcttgGtgtgcacccaggatgacctt	11	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160961173	T	T	160961173	3	4	61	1	0	0	0	0	1	0	0	0	8990	1252	44	3	501	3	LPA	6	160961173	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	297673	160961173	10153894	2960	71205											
LPA	4018	broad.mit.edu	37	chr6	160998291	160998291	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactccgtccatcaccatggTagcaatcctggaccacaggg	9	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160998291	C	C	160998291	3	2	61	1	0	0	0	0	1	0	0	0	8990	1638	57	5	1662	5	LPA	6	160998291	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	37118	160998291	10116776	2961	71206											
LPA	4018	broad.mit.edu	37	chr6	161007396	161007396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcgacttcctgtgcagcaTggaagttttctgcatcacaa	8	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161007396	C	C	161007396	1	2	61	0	1	0	0	0	0	0	0	0	8990	1479	51	5		5	LPA	6	161007396	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9105	161007396	10107671	2962	71207											
LPA	4018	broad.mit.edu	37	chr6	161027647	161027647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtataacaataaggggCtgccacaggatctggattcc	10	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161027647	A	A	161027647	3	1	61	1	0	0	0	0	1	0	0	0	8990	797	28	3	3567	3	LPA	6	161027647	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20251	161027647	10087420	2963	71208											
LPA	4018	broad.mit.edu	37	chr6	161055976	161055976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaagcccacccaagttgCaccagaaatcactccgctgg	8	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161055976	A	A	161055976	1	1	61	0	1	0	0	0	0	0	0	0	8990	725	25	3		3	LPA	6	161055976	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28329	161055976	10059091	2964	71209											
LPA	4018	broad.mit.edu	37	chr6	161087187	161087187	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acttgaattcgctactttggGactcaagtctaagggactga	10	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161087187	C	C	161087187	1	2	61	0	1	0	0	0	0	0	0	0	8990	1189	41	4		4	LPA	6	161087187	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31211	161087187	10027880	2965	71210											
LPA	4018	broad.mit.edu	37	chr6	161087224	161087224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagactgagacaggagagCacaagactaactttggtctc	11	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161087224	A	A	161087224	1	1	61	0	1	0	0	0	0	0	0	0	8990	725	25	3		3	LPA	6	161087224	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37	161087224	10027843	2966	71211											
PLG	5340	broad.mit.edu	37	chr6	161159709	161159710	+	Intron	DNP	CC	AA	AA													ttttctgtccttcttttcctCctttcctcctttcctttctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	161159710	AA	AA	161159709	1	1	61	0	1	0	0	0	0	0	0	0	12181	870	30	3		3	PLG	6	161159709	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	72485	161159709	9955358	2967	71212											
PLG	5340	broad.mit.edu	37	chr6	161162463	161162463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaaggtgagataaattcCattgcccacataacgaattg	7	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161162463	A	A	161162463	1	1	61	0	1	0	0	0	0	0	0	0	12181	609	21	2		2	PLG	6	161162463	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2754	161162463	9952604	2968	71213											
AGPAT4	56895	broad.mit.edu	37	chr6	161557463	161557463	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggtcgtgacttccgcCgtgcccagcaggggctcacc	15	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161557463	T	T	161557463	1	4	61	0	1	0	0	0	0	0	0	0	389	667	23	4		4	AGPAT4	6	161557463	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	395000	161557463	9557604	2969	71214											
PARK2	5071	broad.mit.edu	37	chr6	161832921	161832921	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcattcattccttccTcattcattcctccactcact	0	17	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161832921	A	A	161832921	1	1	61	0	1	0	0	0	0	0	0	0	11543	1566	54	5		5	PARK2	6	161832921	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	275458	161832921	9282146	2970	71215											
PARK2	5071	broad.mit.edu	37	chr6	161970054	161970054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgcaaaacccaaaaagcAgattgagctttcaaactgac	6	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161970054	T	T	161970054	1	4	61	0	1	0	0	0	0	0	0	0	11543	203	7	5		5	PARK2	6	161970054	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	137133	161970054	9145013	2971	71216											
PARK2	5071	broad.mit.edu	37	chr6	161973491	161973491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcagctctgttcacctcCgcctatgactgtgaatgatc	7	15	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161973491	A	A	161973491	1	1	61	0	1	0	0	0	0	0	0	0	11543	667	23	1		1	PARK2	6	161973491	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3437	161973491	9141576	2972	71217											
PARK2	5071	broad.mit.edu	37	chr6	162030744	162030744	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaccctaagaaaacacTgcaagtgaagatctactaac	5	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162030744	A	A	162030744	1	1	61	0	1	0	0	0	0	0	0	0	11543	1595	55	5		5	PARK2	6	162030744	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	57253	162030744	9084323	2973	71218											
PARK2	5071	broad.mit.edu	37	chr6	162037323	162037323	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctccctgcaaggggaggGgccggactcatcccatccct	12	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162037323	A	A	162037323	1	1	61	0	1	0	0	0	0	0	0	0	11543	1247	43	4		4	PARK2	6	162037323	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6579	162037323	9077744	2974	71219											
PARK2	5071	broad.mit.edu	37	chr6	162223764	162223764	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctttgtctccataacatCaatcacttcctatagtagat	4	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162223764	T	T	162223764	1	4	61	0	1	0	0	0	0	0	0	0	11543	841	29	4		4	PARK2	6	162223764	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	186441	162223764	8891303	2975	71220											
PARK2	5071	broad.mit.edu	37	chr6	162869168	162869168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagggtttcctaagctccGtgggatgttcggctccacct	13	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162869168	T	T	162869168	1	4	61	0	1	0	0	0	0	0	0	0	11543	1160	40	3		3	PARK2	6	162869168	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	645404	162869168	8245899	2976	71221											
PARK2	5071	broad.mit.edu	37	chr6	162990916	162990916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagtttactgcctggggaCcaccttgcccatgccttcag	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162990916	A	A	162990916	1	1	61	0	1	0	0	0	0	0	0	0	11543	522	18	3		3	PARK2	6	162990916	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	121748	162990916	8124151	2977	71222											
PACRG	135138	broad.mit.edu	37	chr6	163695257	163695257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgtgatgttctctgccCtgtgtccaaatgttctcatt	10	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163695257	A	A	163695257	1	1	61	0	1	0	0	0	0	0	0	0	11464	696	24	2		2	PACRG	6	163695257	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	704341	163695257	7419810	2978	71223											
QKI	9444	broad.mit.edu	37	chr6	163987676	163987676	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacatttgaaatccattttGataaacctgctgttaatgtt	6	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163987676	T	T	163987676	1	4	61	0	1	0	0	0	0	0	0	0	12981	1305	45	3		3	QKI	6	163987676	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	292419	163987676	7127391	2979	71224											
PDE10A	10846	broad.mit.edu	37	chr6	165842072	165842072	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtggatgaataagtttAaatgttatgccatatattag	9	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165842072	T	T	165842072	1	4	61	0	1	0	0	0	0	0	0	0	11724	377	13	5		5	PDE10A	6	165842072	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1854396	165842072	5272995	2980	71225											
RPS6KA2	6196	broad.mit.edu	37	chr6	166923932	166923932	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatactagatataattccCgccaacttttcattaaaaaa	3	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166923932	G	G	166923932	1	3	61	0	1	0	0	0	0	0	0	0	13762	667	23	4		4	RPS6KA2	6	166923932	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1081860	166923932	4191135	2981	71226											
TTLL2	83887	broad.mit.edu	37	chr6	167753560	167753560	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaggttatggtcttgaccaCtctcctaacctttctcaatg	6	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167753560	G	G	167753560	1	3	61	0	1	0	0	0	0	0	0	0	16853	580	20	4		4	TTLL2	6	167753560	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	829628	167753560	3361507	2982	71227											
TCP10	6953	broad.mit.edu	37	chr6	167794545	167794545	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccagcaacaaagcccacatCtttacggggacgctatattt	7	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167794545	A	A	167794545	1	1	61	0	1	0	0	0	0	0	0	0	15832	928	32	3		3	TCP10	6	167794545	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40985	167794545	3320522	2983	71228											
FAM120B	84498	broad.mit.edu	37	chr6	170686388	170686388	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacacgcgtccctaatccCagatgcccgggagaacacag	10	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170686388	G	G	170686388	1	3	61	0	1	0	0	0	0	0	0	0	5463	609	21	4		4	FAM120B	6	170686388	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2891843	170686388	428679	2984	71229											
PRKAR1B	5575	broad.mit.edu	37	chr7	645927	645927	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtacatccagacatacaAgttacagtttctcttgcaaa	5	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	645927	C	C	645927	1	2	61	0	1	0	0	0	0	0	0	0	12610	87	3	5		5	PRKAR1B	7	645927	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08		645927	158492736	2985	71230											
SNX8	29886	broad.mit.edu	37	chr7	2303908	2303908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcccaccgcgcgtgcccCtgcagaagctgaaaggtcac	11	17	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2303908	A	A	2303908	1	1	61	0	1	0	0	0	0	0	0	0	15022	696	24	2		2	SNX8	7	2303908	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1657981	2303908	156834755	2986	71231											
EIF3B	8662	broad.mit.edu	37	chr7	2403421	2403421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgctgctgctgggggcGgggactcacctctcctgtat	13	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2403421	T	T	2403421	1	4	61	0	1	0	0	0	0	0	0	0	5053	1131	39	1		1	EIF3B	7	2403421	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	99513	2403421	156735242	2987	71232											
CARD11	84433	broad.mit.edu	37	chr7	2972090	2972090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgcaggattgttcgttaCagtgggagaaacagatggac	13	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2972090	A	A	2972090	1	1	61	0	1	0	0	0	0	0	0	0	2671	493	17	3		3	CARD11	7	2972090	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	568669	2972090	156166573	2988	71233											
CARD11	84433	broad.mit.edu	37	chr7	2976629	2976629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcagtgggcaccagggcCcacctggcttcaggcgtggg	15	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2976629	A	A	2976629	1	1	61	0	1	0	0	0	0	0	0	0	2671	638	22	2		2	CARD11	7	2976629	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4539	2976629	156162034	2989	71234											
SDK1	221935	broad.mit.edu	37	chr7	4198048	4198048	+	Intron	DEL	C	-	-													ggcaggacagggtggcagggCcccggcagtcacggtctctt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4198048	-	-	4198048	6	5	61	0	1	1	0	1	0	0	0	0	14081	754	26	0		0	SDK1	7	4198048	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	1221419	4198048	154940615	2990	71235											
RBAK	57786	broad.mit.edu	37	chr7	5104121	5104121	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattcaggagagaaaccctAcgaatgtagcgaatgtggga	12	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5104121	T	T	5104121	3	4	61	1	0	0	0	0	1	0	0	0	13208	391	14	5	1048	5	RBAK	7	5104121	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	906073	5104121	154034542	2991	71236											
FBXL18	80028	broad.mit.edu	37	chr7	5540452	5540452	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcgaggtgttccaggaagGgcaggttcttcagcagagac	15	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5540452	A	A	5540452	3	1	61	1	0	0	0	0	1	0	0	0	5771	1232	43	4	720	4	FBXL18	7	5540452	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	436331	5540452	153598211	2992	71237											
OCM	654231	broad.mit.edu	37	chr7	5923802	5923802	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggatgcaaatgatgtgtGtaaaaaccctggcataatgc	10	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5923802	A	A	5923802	1	1	61	0	1	0	0	0	0	0	0	0	10916	1392	48	4		4	OCM	7	5923802	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	383350	5923802	153214861	2993	71238											
DAGLB	221955	broad.mit.edu	37	chr7	6474681	6474681	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagagaggaaaaggctcggTgactgcgggccccagcccag	16	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6474681	C	C	6474681	1	2	61	0	1	0	0	0	0	0	0	0	4260	1711	59	5		5	DAGLB	7	6474681	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	550879	6474681	152663982	2994	71239											
DAGLB	221955	broad.mit.edu	37	chr7	6476347	6476347	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagtgagaaaatgaggatgGgaaacgtgacaagaagtcct	13	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6476347	C	C	6476347	1	2	61	0	1	0	0	0	0	0	0	0	4260	1247	43	4		4	DAGLB	7	6476347	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1666	6476347	152662316	2995	71240											
COL28A1	340267	broad.mit.edu	37	chr7	7476218	7476218	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatctcagaccttgagataGtatattcttcaaacatattt	4	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7476218	C	C	7476218	1	2	61	0	1	0	0	0	0	0	0	0	3718	1044	36	4		4	COL28A1	7	7476218	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	999871	7476218	151662445	2996	71241											
COL28A1	340267	broad.mit.edu	37	chr7	7491812	7491812	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttttgcagtagtagtagcCgcacttaaaaagtaaaagga	10	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7491812	G	G	7491812	1	3	61	0	1	0	0	0	0	0	0	0	3718	667	23	4		4	COL28A1	7	7491812	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15594	7491812	151646851	2997	71242											
COL28A1	340267	broad.mit.edu	37	chr7	7572451	7572451	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttgtccggatactgttTgactcgtaaacgctgacaaa	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7572451	C	C	7572451	3	2	61	1	0	0	0	0	1	0	0	0	3718	1812	63	5	3457	5	COL28A1	7	7572451	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	80639	7572451	151566212	2998	71243											
NXPH1	30010	broad.mit.edu	37	chr7	8472666	8472666	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggagatgcaatgggcaaGgttggggaagagataccctc	15	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8472666	T	T	8472666	1	4	61	0	1	0	0	0	0	0	0	0	10885	1015	35	2		2	NXPH1	7	8472666	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	900215	8472666	150665997	2999	71244											
PHF14	9678	broad.mit.edu	37	chr7	11022816	11022816	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaatttttatatctgtctGtctggggaaaagggaattct	9	7	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11022816	T	T	11022816	1	4	61	0	1	0	0	0	0	0	0	0	11920	1392	48	3		3	PHF14	7	11022816	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2550150	11022816	148115847	3000	71245											
PHF14	9678	broad.mit.edu	37	chr7	11045893	11045893	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcaccttattaagaatgaAgtttggcatcttgtggccat	8	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11045893	T	T	11045893	1	4	61	0	1	0	0	0	0	0	0	0	11920	87	3	5		5	PHF14	7	11045893	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	23077	11045893	148092770	3001	71246											
THSD7A	221981	broad.mit.edu	37	chr7	11457254	11457254	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaagaacataaacatattCtagaaaatatacatacattc	3	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11457254	G	G	11457254	1	3	61	0	1	0	0	0	0	0	0	0	16002	928	32	4		4	THSD7A	7	11457254	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	411361	11457254	147681409	3002	71247											
THSD7A	221981	broad.mit.edu	37	chr7	11485945	11485945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatttttccttctttttaCtttttcctgtggaagagaaa	5	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11485945	A	A	11485945	3	1	61	1	0	0	0	0	1	0	0	0	16002	565	20	3	2226	3	THSD7A	7	11485945	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28691	11485945	147652718	3003	71248											
THSD7A	221981	broad.mit.edu	37	chr7	11676453	11676453	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcaaactttgaaacaattcTgctggttattgggtctctcg	9	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11676453	G	G	11676453	3	3	61	1	0	0	0	0	1	0	0	0	16002	1580	55	5	4751	5	THSD7A	7	11676453	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	190508	11676453	147462210	3004	71249											
ETV1	2115	broad.mit.edu	37	chr7	13940278	13940278	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaactcgcttcagcaaTgcaatgatatgtggcgttta	9	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13940278	A	A	13940278	1	1	61	0	1	0	0	0	0	0	0	0	5319	1479	51	5		5	ETV1	7	13940278	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2263825	13940278	145198385	3005	71250											
DGKB	1607	broad.mit.edu	37	chr7	14378218	14378218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttctctattcgtcgatGgcttcgtcttttcttagact	6	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14378218	T	T	14378218	3	4	61	1	0	0	0	0	1	0	0	0	4506	1348	47	2	398	2	DGKB	7	14378218	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	437940	14378218	144760445	3006	71251											
DGKB	1607	broad.mit.edu	37	chr7	14453374	14453374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatggaagtcattggcacCcagggcaagagtgatgaatg	15	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14453374	A	A	14453374	1	1	61	0	1	0	0	0	0	0	0	0	4506	638	22	2		2	DGKB	7	14453374	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	75156	14453374	144685289	3007	71252											
DGKB	1607	broad.mit.edu	37	chr7	14620456	14620456	+	Intron	DEL	G	-	-													ggaaaggggtgttgtgtactGtttctgcttttgttgttgca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14620456	-	-	14620456	6	5	61	0	1	1	0	1	0	0	0	0	4506	1392	48	0		0	DGKB	7	14620456	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	167082	14620456	144518207	3008	71253											
DGKB	1607	broad.mit.edu	37	chr7	14722442	14722442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgctcgagccacacagCgctcatggactgtgtacttg	13	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14722442	A	A	14722442	3	1	61	1	0	0	0	0	1	0	0	0	4506	768	27	3	1639	3	DGKB	7	14722442	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	101986	14722442	144416221	3009	71254											
DGKB	1607	broad.mit.edu	37	chr7	14733684	14733684	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccaccaggccaccctcctCtgtggaaatgcttacatttt	6	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14733684	A	A	14733684	1	1	61	0	1	0	0	0	0	0	0	0	4506	928	32	3		3	DGKB	7	14733684	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11242	14733684	144404979	3010	71255											
TMEM195	392636	broad.mit.edu	37	chr7	15426933	15426933	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgactgggggaacatctttTtacagatttgcatgaaaaca	9	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15426933	G	G	15426933	1	3	61	0	1	0	0	0	0	0	0	0	16240	1856	64	5		5	TMEM195	7	15426933	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	693249	15426933	143711730	3011	71256											
TMEM195	392636	broad.mit.edu	37	chr7	15433805	15433805	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaaggttattgatgacCtgtttaaaacagaaggaata	10	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15433805	A	A	15433805	5	1	61	1	0	0	0	0	0	0	1	0	16240	695	24	2	760	2	TMEM195	7	15433805	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6872	15433805	143704858	3012	71257											
MEOX2	4223	broad.mit.edu	37	chr7	15666612	15666612	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgcaatcatattattcacAgttattgaattactactttt	3	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15666612	T	T	15666612	1	4	61	0	1	0	0	0	0	0	0	0	9567	203	7	5		5	MEOX2	7	15666612	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	232807	15666612	143472051	3013	71258											
BZW2	28969	broad.mit.edu	37	chr7	16705174	16705174	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaagttgtaaccaaaaTataagattggagaagaatct	8	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16705174	C	C	16705174	1	2	61	0	1	0	0	0	0	0	0	0	1589	1421	49	5		5	BZW2	7	16705174	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1038562	16705174	142433489	3014	71259											
BZW2	28969	broad.mit.edu	37	chr7	16721015	16721015	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagatcatgaaaccatcCgaaactatgctcaggtagag	9	8	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16721015	A	A	16721015	2	1	61	1	0	0	0	0	0	0	0	1	1589	644	23	1		1	BZW2	7	16721015	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15841	16721015	142417648	3015	71260											
AHR	196	broad.mit.edu	37	chr7	17379180	17379180	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttcagagacattgacttAacggatgaaatcctgacgta	9	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17379180	T	T	17379180	3	4	61	1	0	0	0	0	1	0	0	0	416	359	13	5	1769	5	AHR	7	17379180	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	658165	17379180	141759483	3016	71261											
SNX13	23161	broad.mit.edu	37	chr7	17890414	17890414	+	Intron	DEL	A	-	-													tgaagataaaataatacttcAaaaaaatatatcttaaatta					rs3839705		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17890414	-	-	17890414	6	5	61	0	1	1	0	1	0	0	0	0	14998	145	5	0		0	SNX13	7	17890414	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	511234	17890414	141248249	3017	71262											
HDAC9	9734	broad.mit.edu	37	chr7	18466985	18466985	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgtattctgggttctctaGacgtaaacatttgaatgtta	9	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18466985	C	C	18466985	1	2	61	0	1	0	0	0	0	0	0	0	7081	957	33	4		4	HDAC9	7	18466985	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	576571	18466985	140671678	3018	71263											
HDAC9	9734	broad.mit.edu	37	chr7	18669096	18669096	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcaagaagcgaatgtttgAggtgacaggtaattgaggac	13	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18669096	G	G	18669096	3	3	61	1	0	0	0	0	1	0	0	0	7081	304	11	5	810	5	HDAC9	7	18669096	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	202111	18669096	140469567	3019	71264											
HDAC9	9734	broad.mit.edu	37	chr7	18747935	18747935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggaggaaggggacttgGgacacagagattgcccagct	17	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18747935	T	T	18747935	1	4	61	0	1	0	0	0	0	0	0	0	7081	1247	43	2		2	HDAC9	7	18747935	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	78839	18747935	140390728	3020	71265											
HDAC9	9734	broad.mit.edu	37	chr7	19035744	19035744	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgtgtatccccccaccCcagtaccctcagacatgtct	5	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19035744	A	A	19035744	1	1	61	0	1	0	0	0	0	0	0	0	7081	638	22	2		2	HDAC9	7	19035744	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	287809	19035744	140102919	3021	71266											
HDAC9	9734	broad.mit.edu	37	chr7	19035812	19035812	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaacataaacactgggCacaaaattctgaacagcagc	8	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19035812	A	A	19035812	1	1	61	0	1	0	0	0	0	0	0	0	7081	725	25	3		3	HDAC9	7	19035812	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	68	19035812	140102851	3022	71267											
FERD3L	222894	broad.mit.edu	37	chr7	19184523	19184523	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcacagctctccaagagctCggtcatgaaggagatataga	10	10	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19184523	G	G	19184523	3	3	61	1	0	0	0	0	1	0	0	0	5873	893	31	4	41	4	FERD3L	7	19184523	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	148711	19184523	139954140	3023	71268											
FERD3L	222894	broad.mit.edu	37	chr7	19187255	19187255	+	5'Flank	DEL	A	-	-													actcctttatgattttagccAaggcaatgtacctttcttgc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19187255	-	-	19187255	6	5	61	0	1	1	0	1	0	0	0	0	5873	145	5	0		0	FERD3L	7	19187255	5'Flank	DEL	A	TCGA-17-Z031-01A-01W-0746-08	2732	19187255	139951408	3024	71269											
ABCB5	340273	broad.mit.edu	37	chr7	20691042	20691042	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcattctttggattggcaGatcatggtggatgagaatga	13	4	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20691042	T	T	20691042	5	4	61	1	0	0	0	0	0	0	1	0	44	956	33	3	1378	3	ABCB5	7	20691042	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1503787	20691042	138447621	3025	71270											
ABCB5	340273	broad.mit.edu	37	chr7	20706408	20706408	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatacaacaaagacgtattGataatctaccacactatcta	3	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20706408	C	C	20706408	1	2	61	0	1	0	0	0	0	0	0	0	44	1305	45	4		4	ABCB5	7	20706408	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15366	20706408	138432255	3026	71271											
SP4	6671	broad.mit.edu	37	chr7	21469849	21469849	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcacatcagccagtagttctGaacgcaccattgaagaatct	8	11	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21469849	T	T	21469849	4	4	61	1	0	0	0	0	0	1	0	0	15080	1291	45	3	1076	3	SP4	7	21469849	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	763441	21469849	137668814	3027	71272											
DNAH11	8701	broad.mit.edu	37	chr7	21599337	21599337	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgtttgttgaatggtcTtcacttgtctcctcaagcag	10	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21599337	G	G	21599337	3	3	61	1	0	0	0	0	1	0	0	0	4639	1609	56	5	823	5	DNAH11	7	21599337	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	129488	21599337	137539326	3028	71273											
DNAH11	8701	broad.mit.edu	37	chr7	21631259	21631259	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcagagaagagcaaaaaTctttaacctaataatgtggg	9	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21631259	C	C	21631259	1	2	61	0	1	0	0	0	0	0	0	0	4639	1450	50	5		5	DNAH11	7	21631259	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31922	21631259	137507404	3029	71274											
DNAH11	8701	broad.mit.edu	37	chr7	21698649	21698650	+	Splice_Site	DNP	GG	CT	CT													aaggatttccataaaaaacaGgtattacatagatttgtgat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	21698650	CT	CT	21698649	5	2	61	1	0	0	0	0	0	0	1	0	4639	1014	35	4	5461	4	DNAH11	7	21698649	Splice_Site	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	67390	21698649	137440014	3030	71275											
DNAH11	8701	broad.mit.edu	37	chr7	21723605	21723605	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagataggaaaaacaacccaAaaaagtcccctagtgtgaga	8	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21723605	C	C	21723605	1	2	61	0	1	0	0	0	0	0	0	0	4639	29	1	5		5	DNAH11	7	21723605	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	24956	21723605	137415058	3031	71276											
DNAH11	8701	broad.mit.edu	37	chr7	21760405	21760405	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaccttctgacagcccaaaAgaagtttatgaagtctattt	7	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21760405	G	G	21760405	2	3	61	1	0	0	0	0	0	0	0	1	4639	69	3	5		5	DNAH11	7	21760405	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	36800	21760405	137378258	3032	71277											
DNAH11	8701	broad.mit.edu	37	chr7	21760504	21760504	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatagtttacaggaccagTttccagttttgtgtgggaca	11	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21760504	G	G	21760504	1	3	61	0	1	0	0	0	0	0	0	0	4639	1740	60	5		5	DNAH11	7	21760504	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	99	21760504	137378159	3033	71278											
DNAH11	8701	broad.mit.edu	37	chr7	21760641	21760641	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtagtcccatccctgatGgttctaaccccagctgacaa	9	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21760641	A	A	21760641	1	1	61	0	1	0	0	0	0	0	0	0	4639	1363	47	4		4	DNAH11	7	21760641	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	137	21760641	137378022	3034	71279											
DNAH11	8701	broad.mit.edu	37	chr7	21781538	21781538	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactcttatatttgcttttcTtttcagagacatttcacagt	4	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21781538	G	G	21781538	1	3	61	0	1	0	0	0	0	0	0	0	4639	1624	56	5		5	DNAH11	7	21781538	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	20897	21781538	137357125	3035	71280											
DNAH11	8701	broad.mit.edu	37	chr7	21826206	21826206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccagacttccgctaatcCtgtctgtgtacgtgtttctg	8	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21826206	A	A	21826206	1	1	61	0	1	0	0	0	0	0	0	0	4639	696	24	2		2	DNAH11	7	21826206	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44668	21826206	137312457	3036	71281											
DNAH11	8701	broad.mit.edu	37	chr7	21826313	21826313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttactgcagccgtgatGgtccttctggctcctcgggg	13	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21826313	T	T	21826313	3	4	61	1	0	0	0	0	1	0	0	0	4639	1348	47	2	9925	2	DNAH11	7	21826313	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	107	21826313	137312350	3037	71282											
DNAH11	8701	broad.mit.edu	37	chr7	21858139	21858139	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagactttcagactatttaTttgatggatttagatttgtt	7	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21858139	A	A	21858139	1	1	61	0	1	0	0	0	0	0	0	0	4639	1508	52	5		5	DNAH11	7	21858139	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31826	21858139	137280524	3038	71283											
C7orf46	340277	broad.mit.edu	37	chr7	23724320	23724320	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttattgcaaagttttttgAtaattagaaaataaaaagct	5	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23724320	G	G	23724320	1	3	61	0	1	0	0	0	0	0	0	0	2421	348	12	5		5	C7orf46	7	23724320	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1866181	23724320	135414343	3039	71284											
STK31	56164	broad.mit.edu	37	chr7	23826576	23826576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactatttatttccatggatGtattaaatgagaaaataaca	5	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23826576	T	T	23826576	1	4	61	0	1	0	0	0	0	0	0	0	15414	1392	48	3		3	STK31	7	23826576	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	102256	23826576	135312087	3040	71285											
NPY	4852	broad.mit.edu	37	chr7	24329296	24329296	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggaggcaccaccaggcTtctagactaggggagatttc	15	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24329296	G	G	24329296	1	3	61	0	1	0	0	0	0	0	0	0	10702	1624	56	5		5	NPY	7	24329296	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	502720	24329296	134809367	3041	71286											
OSBPL3	26031	broad.mit.edu	37	chr7	24911691	24911691	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccacttcccagctgtcctGttccaacaaaagagttcatg	6	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24911691	C	C	24911691	1	2	61	0	1	0	0	0	0	0	0	0	11373	1392	48	4		4	OSBPL3	7	24911691	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	582395	24911691	134226972	3042	71287											
C7orf31	136895	broad.mit.edu	37	chr7	25219018	25219018	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaaacacattttacacTgctaaattgttcaacctgac	5	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25219018	C	C	25219018	1	2	61	0	1	0	0	0	0	0	0	0	2412	1595	55	5		5	C7orf31	7	25219018	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	307327	25219018	133919645	3043	71288											
HOXA2	3199	broad.mit.edu	37	chr7	27141938	27141938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggcgagggtgactgccgGggttcaggctgggaatggtc	20	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27141938	T	T	27141938	3	4	61	1	0	0	0	0	1	0	0	0	7359	1232	43	2	956	2	HOXA2	7	27141938	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1922920	27141938	131996725	3044	71289											
HOXA3	3200	broad.mit.edu	37	chr7	27149695	27149695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagcttggggaccaggagCcaggccagaggaccctcttc	14	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27149695	A	A	27149695	1	1	61	0	1	0	0	0	0	0	0	0	7360	754	26	3		3	HOXA3	7	27149695	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7757	27149695	131988968	3045	71290											
HOXA6	3203	broad.mit.edu	37	chr7	27187378	27187378	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggaactcatttgcgcgccCctctgcaggactgtgatttg	11	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27187378	T	T	27187378	1	4	61	0	1	0	0	0	0	0	0	0	7363	638	22	4		4	HOXA6	7	27187378	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37683	27187378	131951285	3046	71291											
TAX1BP1	8887	broad.mit.edu	37	chr7	27809349	27809349	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgttaaagttaattgccGttctggaaaaagaaacagca	8	6	1	1	rs34347226	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27809349	A	A	27809349	3	1	61	1	0	0	0	0	1	0	0	0	15713	1145	40	4	522	4	TAX1BP1	7	27809349	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	621971	27809349	131329314	3047	71292											
JAZF1	221895	broad.mit.edu	37	chr7	27880661	27880661	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcccttacaaccctggaAgcaggagccctgcgttccca	8	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27880661	C	C	27880661	1	2	61	0	1	0	0	0	0	0	0	0	8016	87	3	5		5	JAZF1	7	27880661	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	71312	27880661	131258002	3048	71293											
JAZF1	221895	broad.mit.edu	37	chr7	28111291	28111291	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctatccagtgacggcacTtacagctgattaaagggttt	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28111291	C	C	28111291	1	2	61	0	1	0	0	0	0	0	0	0	8016	1624	56	5		5	JAZF1	7	28111291	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	230630	28111291	131027372	3049	71294											
CREB5	9586	broad.mit.edu	37	chr7	28731184	28731184	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaggatgttttgtagactgGagagaaagggacttccaagg	14	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28731184	A	A	28731184	1	1	61	0	1	0	0	0	0	0	0	0	3892	1189	41	4		4	CREB5	7	28731184	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	619893	28731184	130407479	3050	71295											
CPVL	54504	broad.mit.edu	37	chr7	29111658	29111658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggataattacatgcacaCacacatatacaccccacaac	4	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29111658	A	A	29111658	1	1	61	0	1	0	0	0	0	0	0	0	3867	493	17	3		3	CPVL	7	29111658	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	380474	29111658	130027005	3051	71296											
CPVL	54504	broad.mit.edu	37	chr7	29111968	29111968	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaattccgttcaggttgatCttcacctctctcacagggtt	8	12	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29111968	T	T	29111968	2	4	61	1	0	0	0	0	0	0	0	1	3867	912	32	4		4	CPVL	7	29111968	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	310	29111968	130026695	3052	71297											
SCRN1	9805	broad.mit.edu	37	chr7	29983488	29983488	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcccacacagagaggaccTgcaacggcacgtctttcttc	9	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29983488	A	A	29983488	1	1	61	0	1	0	0	0	0	0	0	0	14051	1595	55	5		5	SCRN1	7	29983488	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	871520	29983488	129155175	3053	71298											
PLEKHA8	84725	broad.mit.edu	37	chr7	30085801	30085801	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagggctcttctgagtctcTgatctccctctgtcttgctc	8	14	6	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30085801	C	C	30085801	1	2	61	0	1	0	0	0	0	0	0	0	12157	1595	55	5		5	PLEKHA8	7	30085801	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	102313	30085801	129052862	3054	71299											
PLEKHA8	84725	broad.mit.edu	37	chr7	30118307	30118307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtattgggatgcagagGgacctcagcctttacctccc	10	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30118307	C	C	30118307	3	2	61	1	0	0	0	0	1	0	0	0	12157	1247	43	4		4	PLEKHA8	7	30118307	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32506	30118307	129020356	3055	71300											
NOD1	10392	broad.mit.edu	37	chr7	30490947	30490947	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtgatgcaggacgaaggAgagggcgctgcagtcggccg	19	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30490947	G	G	30490947	3	3	61	1	0	0	0	0	1	0	0	0	10611	304	11	5	811	5	NOD1	7	30490947	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	372640	30490947	128647716	3056	71301											
INMT	11185	broad.mit.edu	37	chr7	30768967	30768967	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggagggcagaagagtggGactgcaagcagggcattcgg	20	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30768967	T	T	30768967	1	4	61	0	1	0	0	0	0	0	0	0	7815	1189	41	3		3	INMT	7	30768967	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	278020	30768967	128369696	3057	71302											
GHRHR	2692	broad.mit.edu	37	chr7	31013563	31013563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggatggggctccagtgggTgtcccagctctgaagcaccc	15	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31013563	A	A	31013563	1	1	61	0	1	0	0	0	0	0	0	0	6437	1711	59	5		5	GHRHR	7	31013563	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	244596	31013563	128125100	3058	71303											
GHRHR	2692	broad.mit.edu	37	chr7	31014725	31014725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactactgacgggctgtgcaCagcaggaaatgcaactccag	11	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31014725	A	A	31014725	1	1	61	0	1	0	0	0	0	0	0	0	6437	493	17	3		3	GHRHR	7	31014725	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1162	31014725	128123938	3059	71304											
GHRHR	2692	broad.mit.edu	37	chr7	31015438	31015438	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatccgcatcctggtgaggaAactggagccagctcagggca	13	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31015438	T	T	31015438	3	4	61	1	0	0	0	0	1	0	0	0	6437	14	1	5	967	5	GHRHR	7	31015438	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	713	31015438	128123225	3060	71305											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31132262	31132262	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttttgctccttaggttaActttgtgctttttattggca	7	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31132262	C	C	31132262	3	2	61	1	0	0	0	0	1	0	0	0	303	43	2	5	1005	5	ADCYAP1R1	7	31132262	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	116824	31132262	128006401	3061	71306											
CCDC129	223075	broad.mit.edu	37	chr7	31614412	31614412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaatgagtgggcaggtGggccacagtgtaggcgagga	20	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31614412	T	T	31614412	1	4	61	0	1	0	0	0	0	0	0	0	2790	1363	47	2		2	CCDC129	7	31614412	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	482150	31614412	127524251	3062	71307											
C7orf16	10842	broad.mit.edu	37	chr7	31734972	31734972	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataaacacttttccttttcAggccaaatcacctctgtcct	3	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31734972	T	T	31734972	1	4	61	0	1	0	0	0	0	0	0	0	2403	203	7	5		5	C7orf16	7	31734972	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	120560	31734972	127403691	3063	71308											
C7orf16	10842	broad.mit.edu	37	chr7	31736880	31736880	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagccacactcagtgcTaccttttaggtttatctcta	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31736880	G	G	31736880	1	3	61	0	1	0	0	0	0	0	0	0	2403	1537	53	5		5	C7orf16	7	31736880	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1908	31736880	127401783	3064	71309											
PDE1C	5137	broad.mit.edu	37	chr7	31793148	31793148	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagcagggcgtttaaaatgAcgcaaaggaggcttgatgac	13	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31793148	T	T	31793148	2	4	61	1	0	0	0	0	0	0	0	1	11729	290	10	5		5	PDE1C	7	31793148	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	56268	31793148	127345515	3065	71310											
PDE1C	5137	broad.mit.edu	37	chr7	31862978	31862978	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttattgctgtgaaatatCtggatcctgaggtttataat	9	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31862978	G	G	31862978	1	3	61	0	1	0	0	0	0	0	0	0	11729	928	32	4		4	PDE1C	7	31862978	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	69830	31862978	127275685	3066	71311											
PDE1C	5137	broad.mit.edu	37	chr7	31864539	31864539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcgattaatggactcaCaatcttctcggtcatgtccg	7	11	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31864539	A	A	31864539	3	1	61	1	0	0	0	0	1	0	0	0	11729	478	17	3	576	3	PDE1C	7	31864539	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1561	31864539	127274124	3067	71312											
PDE1C	5137	broad.mit.edu	37	chr7	32037859	32037859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggatggtctcgatctcCtgacctcgtgattctcccgc	10	15	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32037859	A	A	32037859	1	1	61	0	1	0	0	0	0	0	0	0	11729	696	24	2		2	PDE1C	7	32037859	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	173320	32037859	127100804	3068	71313											
PDE1C	5137	broad.mit.edu	37	chr7	32252192	32252192	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcatttcccagagcatactCcagcactcggtcacatgcgc	7	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32252192	A	A	32252192	1	1	61	0	1	0	0	0	0	0	0	0	11729	870	30	3		3	PDE1C	7	32252192	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	214333	32252192	126886471	3069	71314											
BMPER	168667	broad.mit.edu	37	chr7	34014328	34014328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggctgtgtgtttgagGgtgtgcagtatcaagaaggg	16	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34014328	T	T	34014328	3	4	61	1	0	0	0	0	1	0	0	0	1474	1232	43	2	530	2	BMPER	7	34014328	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1762136	34014328	125124335	3070	71315											
NPSR1	387129	broad.mit.edu	37	chr7	34739815	34739815	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataaggcggatgtaacgagAgcaccagaacaacagagctg	12	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34739815	T	T	34739815	1	4	61	0	1	0	0	0	0	0	0	0	10695	319	11	5		5	NPSR1	7	34739815	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	725487	34739815	124398848	3071	71316											
NPSR1	387129	broad.mit.edu	37	chr7	34884607	34884607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcttggtaagcaatgtcCctccttgagctgtaaagtgg	10	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34884607	A	A	34884607	1	1	61	0	1	0	0	0	0	0	0	0	10695	638	22	2		2	NPSR1	7	34884607	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	144792	34884607	124254056	3072	71317											
NPSR1	387129	broad.mit.edu	37	chr7	34885045	34885045	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtccttccaccctcctgtCttctgccctttccttttcct	3	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34885045	G	G	34885045	1	3	61	0	1	0	0	0	0	0	0	0	10695	928	32	4		4	NPSR1	7	34885045	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	438	34885045	124253618	3073	71318											
EEPD1	80820	broad.mit.edu	37	chr7	36327311	36327312	+	Missense_Mutation	DNP	GA	TT	TT													ccctgaccctcctggggagcGagaatcccagcaagaatcac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36327312	TT	TT	36327311	3	4	61	1	0	0	0	0	1	0	0	0	4972	1059	37	3	1258	3	EEPD1	7	36327311	Missense_Mutation	DNP	GA	TCGA-17-Z031-01A-01W-0746-08	1442266	36327311	122811352	3074	71319											
KIAA0895	23366	broad.mit.edu	37	chr7	36423521	36423521	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccactgccttatgattaggtCttggccttttctctccctgt	7	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36423521	G	G	36423521	3	3	61	1	0	0	0	0	1	0	0	0	8267	913	32	4	1490	4	KIAA0895	7	36423521	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	96210	36423521	122715142	3075	71320											
AOAH	313	broad.mit.edu	37	chr7	36677629	36677629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaataaatgaaccactcCataaatttgtaataaaataa	2	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36677629	A	A	36677629	1	1	61	0	1	0	0	0	0	0	0	0	728	609	21	2		2	AOAH	7	36677629	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	254108	36677629	122461034	3076	71321											
AOAH	313	broad.mit.edu	37	chr7	36698634	36698634	+	Intron	DEL	G	-	-													gcaggaatattatttcttgcGgggtaattgaaaatgtcatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36698634	-	-	36698634	6	5	61	0	1	1	0	1	0	0	0	0	728	1131	39	0		0	AOAH	7	36698634	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	21005	36698634	122440029	3077	71322											
AOAH	313	broad.mit.edu	37	chr7	36734496	36734496	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatggtttcaaagaggatAgacagatgatggatggaatg	14	2	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36734496	C	C	36734496	1	2	61	0	1	0	0	0	0	0	0	0	728	435	15	5		5	AOAH	7	36734496	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	35862	36734496	122404167	3078	71323											
ELMO1	9844	broad.mit.edu	37	chr7	36901124	36901124	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttgtcaagaggtttctaTtctcctccaagtcagcaaga	8	9	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36901124	A	A	36901124	1	1	61	0	1	0	0	0	0	0	0	0	5107	1508	52	5		5	ELMO1	7	36901124	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	166628	36901124	122237539	3079	71324											
ELMO1	9844	broad.mit.edu	37	chr7	37307001	37307001	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagatacataacaggttcctAgtttttgatcactaaaaaca	5	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37307001	T	T	37307001	1	4	61	0	1	0	0	0	0	0	0	0	5107	435	15	5		5	ELMO1	7	37307001	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	405877	37307001	121831662	3080	71325											
ELMO1	9844	broad.mit.edu	37	chr7	37355347	37355347	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acactttctgctctttgaggActaatggtgaattctgttgg	10	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37355347	T	T	37355347	1	4	61	0	1	0	0	0	0	0	0	0	5107	290	10	5		5	ELMO1	7	37355347	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	48346	37355347	121783316	3081	71326											
ELMO1	9844	broad.mit.edu	37	chr7	37382418	37382418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcactcagtgcagatgcaGggtgaattttgcttcatcac	10	9	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37382418	T	T	37382418	1	4	61	0	1	0	0	0	0	0	0	0	5107	1015	35	2		2	ELMO1	7	37382418	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	27071	37382418	121756245	3082	71327											
TXNDC3	51314	broad.mit.edu	37	chr7	37916347	37916347	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttttattaaacttctagtaAtttctgaacatatcagattt	4	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37916347	T	T	37916347	1	4	61	0	1	0	0	0	0	0	0	0	16924	116	4	5		5	TXNDC3	7	37916347	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	533929	37916347	121222316	3083	71328											
TXNDC3	51314	broad.mit.edu	37	chr7	37924709	37924709	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattagctactgagctacActtcttattacctcttcttt	3	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37924709	C	C	37924709	1	2	61	0	1	0	0	0	0	0	0	0	16924	174	6	5		5	TXNDC3	7	37924709	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8362	37924709	121213954	3084	71329											
AMPH	273	broad.mit.edu	37	chr7	38424287	38424287	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacacatgctccattgaTacatcttcccaaggtttgtc	6	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38424287	C	C	38424287	1	2	61	0	1	0	0	0	0	0	0	0	588	1421	49	5		5	AMPH	7	38424287	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	499578	38424287	120714376	3085	71330											
AMPH	273	broad.mit.edu	37	chr7	38485542	38485543	+	Intron	INS	-	CT	CT													aagtgtgttacacctccctcINSctctctctcttcctcctgct					rs143683786	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	38485543	CT	CT	38485542	6	5	61	0	1	1	1	0	0	0	0	0	588	870	30	0		0	AMPH	7	38485542	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	61255	38485542	120653121	3086	71331											
C7orf10	79783	broad.mit.edu	37	chr7	40868735	40868735	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgccatggcaacaacccAgaagtttccttatatggttc	7	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40868735	G	G	40868735	1	3	61	0	1	0	0	0	0	0	0	0	2401	203	7	5		5	C7orf10	7	40868735	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2383193	40868735	118269928	3087	71332											
INHBA	3624	broad.mit.edu	37	chr7	41740049	41740049	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcacgcgcaggtttttttGtgtgtgtggatttttttatt	10	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41740049	A	A	41740049	1	1	61	0	1	0	0	0	0	0	0	0	7811	1392	48	4		4	INHBA	7	41740049	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	871314	41740049	117398614	3088	71333											
GLI3	2737	broad.mit.edu	37	chr7	42065784	42065784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacggccgggtgcatcgaCctgtccctctcacctgtgag	12	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42065784	T	T	42065784	1	4	61	0	1	0	0	0	0	0	0	0	6503	522	18	4		4	GLI3	7	42065784	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	325735	42065784	117072879	3089	71334											
GLI3	2737	broad.mit.edu	37	chr7	42224356	42224356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctggggcagccctcaccCccaggaattattagatcaat	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42224356	A	A	42224356	1	1	61	0	1	0	0	0	0	0	0	0	6503	638	22	2		2	GLI3	7	42224356	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	158572	42224356	116914307	3090	71335											
GLI3	2737	broad.mit.edu	37	chr7	42262847	42262847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagctgtgggactgggcCtccatgatgtcttctcatta	13	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42262847	A	A	42262847	3	1	61	1	0	0	0	0	1	0	0	0	6503	680	24	2	4792	2	GLI3	7	42262847	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38491	42262847	116875816	3091	71336											
HECW1	23072	broad.mit.edu	37	chr7	43484518	43484518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagcgcggcagaggaggagGacggcgcggaggaggagtcc	22	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43484518	T	T	43484518	3	4	61	1	0	0	0	0	1	0	0	0	7109	1174	41	3	1781	3	HECW1	7	43484518	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1221671	43484518	115654145	3092	71337											
HECW1	23072	broad.mit.edu	37	chr7	43594353	43594353	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgggcttcggcgcttctGcatagagaaatgggggaaaa	14	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43594353	A	A	43594353	3	1	61	1	0	0	0	0	1	0	0	0	7109	1319	46	4	4779	4	HECW1	7	43594353	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	109835	43594353	115544310	3093	71338											
STK17A	9263	broad.mit.edu	37	chr7	43647820	43647820	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtgttcgccatttcttatGagttatatattactttaatt	5	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43647820	A	A	43647820	1	1	61	0	1	0	0	0	0	0	0	0	15408	1305	45	4		4	STK17A	7	43647820	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	53467	43647820	115490843	3094	71339											
BLVRA	644	broad.mit.edu	37	chr7	43830765	43830765	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctggcagcagatcaccagGacctgtcgggaggaggggag	17	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43830765	T	T	43830765	1	4	61	0	1	0	0	0	0	0	0	0	1457	1189	41	3		3	BLVRA	7	43830765	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	182945	43830765	115307898	3095	71340											
URGCP	55665	broad.mit.edu	37	chr7	43958420	43958420	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatggaggagttcgctacTgagggcactgaccacaagga	13	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43958420	A	A	43958420	1	1	61	0	1	0	0	0	0	0	0	0	17152	1595	55	5		5	URGCP	7	43958420	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	127655	43958420	115180243	3096	71341											
AEBP1	165	broad.mit.edu	37	chr7	44153188	44153188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccggatcgttctccctcCgcagccagtggtggtgatta	12	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44153188	A	A	44153188	1	1	61	0	1	0	0	0	0	0	0	0	349	667	23	1		1	AEBP1	7	44153188	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	194768	44153188	114985475	3097	71342											
MYL7	58498	broad.mit.edu	37	chr7	44179969	44179969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagacggtgaagttgatgGggcccttgccctcttgcagc	15	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44179969	T	T	44179969	3	4	61	1	0	0	0	0	1	0	0	0	10147	1232	43	2	292	2	MYL7	7	44179969	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26781	44179969	114958694	3098	71343											
MYL7	58498	broad.mit.edu	37	chr7	44180797	44180797	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggatcctcttcctctcccTggggaccaccctcaacccaa	6	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44180797	A	A	44180797	1	1	61	0	1	0	0	0	0	0	0	0	10147	1595	55	5		5	MYL7	7	44180797	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	828	44180797	114957866	3099	71344											
GCK	2645	broad.mit.edu	37	chr7	44192957	44192957	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcttcacactggcctcttCatgggtctccagcctcaggc	8	16	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44192957	G	G	44192957	3	3	61	1	0	0	0	0	1	0	0	0	6355	835	29	4	1282	4	GCK	7	44192957	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12160	44192957	114945706	3100	71345											
CAMK2B	816	broad.mit.edu	37	chr7	44294082	44294082	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcagcaggagtgggtgaagGagggatggtgagggtataaa	20	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44294082	C	C	44294082	1	2	61	0	1	0	0	0	0	0	0	0	2626	1189	41	4		4	CAMK2B	7	44294082	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	101125	44294082	114844581	3101	71346											
NPC1L1	29881	broad.mit.edu	37	chr7	44560418	44560418	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctgtatgctgccaggcCgctgcaagaaggtcagggca	16	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44560418	T	T	44560418	3	4	61	1	0	0	0	0	1	0	0	0	10666	666	23	4	1025	4	NPC1L1	7	44560418	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	266336	44560418	114578245	3102	71347											
PPIA	5478	broad.mit.edu	37	chr7	44840805	44840805	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaaaaaaaaaaaagctAcctttctcgtcttggttcat	4	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44840805	C	C	44840805	1	2	61	0	1	0	0	0	0	0	0	0	12412	406	14	5		5	PPIA	7	44840805	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	280387	44840805	114297858	3103	71348											
MYO1G	64005	broad.mit.edu	37	chr7	45016164	45016164	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcccattgccactcaccTctccacctcagccctctggc	6	21	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45016164	C	C	45016164	3	2	61	1	0	0	0	0	1	0	0	0	10168	1565	54	5	2739	5	MYO1G	7	45016164	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	175359	45016164	114122499	3104	71349											
TBRG4	9238	broad.mit.edu	37	chr7	45144103	45144103	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatctgcagggccagcgctCccctctctccaccgttctgt	9	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45144103	A	A	45144103	1	1	61	0	1	0	0	0	0	0	0	0	15771	870	30	3		3	TBRG4	7	45144103	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	127939	45144103	113994560	3105	71350											
IGFBP1	3484	broad.mit.edu	37	chr7	45928285	45928285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgctcgcgtctggctgGtactgctcctgctgactgtc	12	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45928285	T	T	45928285	3	4	61	1	0	0	0	0	1	0	0	0	7648	1261	44	3	36	3	IGFBP1	7	45928285	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	784182	45928285	113210378	3106	71351											
TNS3	64759	broad.mit.edu	37	chr7	47336694	47336694	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttacctttcttgttcagcTgcaggactgaaggtgggggc	13	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47336694	A	A	47336694	3	1	61	1	0	0	0	0	1	0	0	0	16467	1580	55	5	707	5	TNS3	7	47336694	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1408409	47336694	111801969	3107	71352											
PKD1L1	168507	broad.mit.edu	37	chr7	47840434	47840434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccacatagagagcagaaatCggtgcaggtgggagagggcg	17	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47840434	A	A	47840434	3	1	61	1	0	0	0	0	1	0	0	0	12059	884	31	3	559	3	PKD1L1	7	47840434	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	503740	47840434	111298229	3108	71353											
PKD1L1	168507	broad.mit.edu	37	chr7	47879177	47879177	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctccttcaccatcacgTggctgatgaaccagcctggg	11	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47879177	C	C	47879177	3	2	61	1	0	0	0	0	1	0	0	0	12059	1696	59	5	3001	5	PKD1L1	7	47879177	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	38743	47879177	111259486	3109	71354											
PKD1L1	168507	broad.mit.edu	37	chr7	47942155	47942155	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaatttatgttgatgaaCgtcaggctttcattcactct	6	8	4	2	rs75294716	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47942155	A	A	47942155	1	1	61	0	1	0	0	0	0	0	0	0	12059	551	19	3		3	PKD1L1	7	47942155	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	62978	47942155	111196508	3110	71355											
PKD1L1	168507	broad.mit.edu	37	chr7	47968929	47968929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagaagccatatgaacaCggaatcccagatttggaggt	10	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47968929	A	A	47968929	3	1	61	1	0	0	0	0	1	0	0	0	12059	536	19	3	7821	3	PKD1L1	7	47968929	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26774	47968929	111169734	3111	71356											
SUN3	256979	broad.mit.edu	37	chr7	48045447	48045448	+	Intron	INS	-	C	C													ttatctaaattgattaatttINScccccccccaagttaccaga					rs142156983	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48045448	C	C	48045447	6	5	61	0	1	1	1	0	0	0	0	0	15511	1798	62	0		0	SUN3	7	48045447	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	76518	48045447	111093216	3112	71357											
SUN3	256979	broad.mit.edu	37	chr7	48065474	48065474	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattacttaggaagacttacCtacaagaagaaaagtcagtg	8	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48065474	G	G	48065474	3	3	61	1	0	0	0	0	1	0	0	0	15511	695	24	4	925	4	SUN3	7	48065474	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20027	48065474	111073189	3113	71358											
ABCA13	154664	broad.mit.edu	37	chr7	48285074	48285074	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtcaagcttacttaccTtaggtgaataataatcaatt	5	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48285074	G	G	48285074	1	3	61	0	1	0	0	0	0	0	0	0	31	1624	56	5		5	ABCA13	7	48285074	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	219600	48285074	110853589	3114	71359											
ABCA13	154664	broad.mit.edu	37	chr7	48288997	48288997	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggatgctttccccttttAgtgaggtgacataatttcct	11	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48288997	G	G	48288997	1	3	61	0	1	0	0	0	0	0	0	0	31	435	15	5		5	ABCA13	7	48288997	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3923	48288997	110849666	3115	71360											
ABCA13	154664	broad.mit.edu	37	chr7	48311973	48311973	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctataataactagtctccatGaatttggatttttggagcag	8	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48311973	T	T	48311973	4	4	61	1	0	0	0	0	0	1	0	0	31	1291	45	3	2605	3	ABCA13	7	48311973	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22976	48311973	110826690	3116	71361											
ABCA13	154664	broad.mit.edu	37	chr7	48352833	48352833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggactttcaacaggtgtGtgtttcatctttgtccctag	9	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48352833	T	T	48352833	1	4	61	0	1	0	0	0	0	0	0	0	31	1392	48	3		3	ABCA13	7	48352833	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40860	48352833	110785830	3117	71362											
ABCA13	154664	broad.mit.edu	37	chr7	48545803	48545803	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccatttttttctgctaattGaccagggcctgggcaaagca	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48545803	T	T	48545803	1	4	61	0	1	0	0	0	0	0	0	0	31	1305	45	3		3	ABCA13	7	48545803	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	192970	48545803	110592860	3118	71363											
ABCA13	154664	broad.mit.edu	37	chr7	48596924	48596925	+	Intron	INS	-	A	A													atttcttattgctcatgaacINSaaccttttctttcagattga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48596925	A	A	48596924	6	5	61	0	1	1	1	0	0	0	0	0	31	493	17	0		0	ABCA13	7	48596924	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	51121	48596924	110541739	3119	71364											
ZPBP	11055	broad.mit.edu	37	chr7	49977221	49977221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagggctgcagatcactGtgaaaaaagagtaagttaat	10	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49977221	T	T	49977221	1	4	61	0	1	0	0	0	0	0	0	0	18348	1392	48	3		3	ZPBP	7	49977221	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1380297	49977221	109161442	3120	71365											
ZPBP	11055	broad.mit.edu	37	chr7	49983061	49983061	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttatatcacagacctcTtgccaacatttagatagcca	5	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49983061	C	C	49983061	1	2	61	0	1	0	0	0	0	0	0	0	18348	1624	56	5		5	ZPBP	7	49983061	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5840	49983061	109155602	3121	71366											
ZPBP	11055	broad.mit.edu	37	chr7	49983902	49983903	+	Intron	DNP	CT	AA	AA													tgttcttgtatttcttttgcCtgtacatattcaggcctgag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	49983903	AA	AA	49983902	1	1	61	0	1	0	0	0	0	0	0	0	18348	696	24	2		2	ZPBP	7	49983902	Intron	DNP	CT	TCGA-17-Z031-01A-01W-0746-08	841	49983902	109154761	3122	71367											
ZPBP	11055	broad.mit.edu	37	chr7	49983941	49983941	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactgtggcctggtccctcAtgttttgacctcctgcttcc	9	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49983941	T	T	49983941	1	4	61	0	1	0	0	0	0	0	0	0	18348	232	8	5		5	ZPBP	7	49983941	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	39	49983941	109154722	3123	71368											
IKZF1	10320	broad.mit.edu	37	chr7	50435967	50435967	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagttgtgcggtgtcctggGagcatggcagtggagtaaca	17	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50435967	T	T	50435967	1	4	61	0	1	0	0	0	0	0	0	0	7684	1189	41	3		3	IKZF1	7	50435967	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	452026	50435967	108702696	3124	71369											
IKZF1	10320	broad.mit.edu	37	chr7	50466154	50466154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaactttccttcttgttGtccccaacactgggacacaa	6	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50466154	T	T	50466154	1	4	61	0	1	0	0	0	0	0	0	0	7684	1392	48	3		3	IKZF1	7	50466154	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30187	50466154	108672509	3125	71370											
IKZF1	10320	broad.mit.edu	37	chr7	50467526	50467526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccgtgttccccttcccCtccccggttgtagatttcag	9	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50467526	A	A	50467526	1	1	61	0	1	0	0	0	0	0	0	0	7684	696	24	2		2	IKZF1	7	50467526	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1372	50467526	108671137	3126	71371											
IKZF1	10320	broad.mit.edu	37	chr7	50467763	50467763	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgcccgctggtgcagaCgcccccgggcggttccgagg	16	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50467763	T	T	50467763	3	4	61	1	0	0	0	0	1	0	0	0	7684	536	19	4	1024	4	IKZF1	7	50467763	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	237	50467763	108670900	3127	71372											
DDC	1644	broad.mit.edu	37	chr7	50531141	50531141	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttggaaccctggagggattGaaagagaggaactgtgctca	15	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50531141	C	C	50531141	1	2	61	0	1	0	0	0	0	0	0	0	4358	1305	45	4		4	DDC	7	50531141	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	63378	50531141	108607522	3128	71373											
COBL	23242	broad.mit.edu	37	chr7	51095861	51095861	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctgggaagactgaaccaGtgagaaacaggagcttctgt	12	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51095861	C	C	51095861	3	2	61	1	0	0	0	0	1	0	0	0	3685	1020	36	4	869	4	COBL	7	51095861	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	564720	51095861	108042802	3129	71374											
POM121L12	285877	broad.mit.edu	37	chr7	53103125	53103125	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagagggagcgggagggGgagcagagagaaaggggaga	25	2	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103125	A	A	53103125	1	1	61	0	1	0	0	0	0	0	0	0	12336	1247	43	4		4	POM121L12	7	53103125	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2007264	53103125	106035538	3130	71375											
POM121L12	285877	broad.mit.edu	37	chr7	53104205	53104205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcggcagctgcagtaggGtctccttcgccctcgaggtc	13	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104205	T	T	53104205	3	4	61	1	0	0	0	0	1	0	0	0	12336	1261	44	3	843	3	POM121L12	7	53104205	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1080	53104205	106034458	3131	71376											
SEPT14	346288	broad.mit.edu	37	chr7	55878806	55878806	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtcaggggtgtttgaataGctcccgcggtgatatccagg	14	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55878806	C	C	55878806	1	2	61	0	1	0	0	0	0	0	0	0	14176	986	34	4		4	SEPT14	7	55878806	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2774601	55878806	103259857	3132	71377											
CCT6A	908	broad.mit.edu	37	chr7	56128690	56128690	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagctgatcaaacctttctGataatgtaggatttattcat	6	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56128690	T	T	56128690	1	4	61	0	1	0	0	0	0	0	0	0	2987	1305	45	3		3	CCT6A	7	56128690	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	249884	56128690	103009973	3133	71378											
ZNF716	441234	broad.mit.edu	37	chr7	57522109	57522109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctgcctatggcaacatGgtaactgtttgtgtgttcat	9	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57522109	T	T	57522109	1	4	61	0	1	0	0	0	0	0	0	0	18247	1363	47	2		2	ZNF716	7	57522109	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1393419	57522109	101616554	3134	71379											
ZNF107	51427	broad.mit.edu	37	chr7	64168335	64168335	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatactggagagaaaccCtacaaatgtgaagaacatgg	9	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64168335	A	A	64168335	2	1	61	1	0	0	0	0	0	0	0	1	17841	668	24	2		2	ZNF107	7	64168335	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6646226	64168335	94970328	3135	71380											
ZNF117	51351	broad.mit.edu	37	chr7	64438324	64438324	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttatgtgtagaaagggttGaagattggttaaaagctttg	12	1	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64438324	A	A	64438324	1	1	61	0	1	0	0	0	0	0	0	0	17843	1305	45	4		4	ZNF117	7	64438324	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	269989	64438324	94700339	3136	71381											
ZNF117	51351	broad.mit.edu	37	chr7	64453398	64453398	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagtagcatgttcatacCcagcatggacagaaaaggct	11	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64453398	A	A	64453398	1	1	61	0	1	0	0	0	0	0	0	0	17843	623	22	2		2	ZNF117	7	64453398	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15074	64453398	94685265	3137	71382											
RABGEF1	27342	broad.mit.edu	37	chr7	66264294	66264294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggagctcttgtttactGtctctctctctttagagccc	7	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66264294	T	T	66264294	1	4	61	0	1	0	0	0	0	0	0	0	13074	1392	48	3		3	RABGEF1	7	66264294	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1810896	66264294	92874369	3138	71383											
TYW1	55253	broad.mit.edu	37	chr7	66520749	66520749	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaatttttgcTaaattttaaagtcacttttt	2	3	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66520749	C	C	66520749	1	2	61	0	1	0	0	0	0	0	0	0	16944	1537	53	5		5	TYW1	7	66520749	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	256455	66520749	92617914	3139	71384											
STAG3L4	64940	broad.mit.edu	37	chr7	66785020	66785020	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatggatgtgtgctctacGggttcttagaatagcaatga	13	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66785020	A	A	66785020	1	1	61	0	1	0	0	0	0	0	0	0	15365	1131	39	4		4	STAG3L4	7	66785020	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	264271	66785020	92353643	3140	71385											
AUTS2	26053	broad.mit.edu	37	chr7	69840994	69840994	+	Intron	DEL	T	-	-													gagaacggaggagtagtttgTtttttgtcgttaaaaaaaaa					rs149649407		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69840994	-	-	69840994	6	5	61	0	1	1	0	1	0	0	0	0	1230	1740	60	0		0	AUTS2	7	69840994	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	3055974	69840994	89297669	3141	71386											
AUTS2	26053	broad.mit.edu	37	chr7	69871192	69871192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctttctgacctgccacCcccttccttccttctgtccc	4	21	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69871192	T	T	69871192	1	4	61	0	1	0	0	0	0	0	0	0	1230	638	22	4		4	AUTS2	7	69871192	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30198	69871192	89267471	3142	71387											
AUTS2	26053	broad.mit.edu	37	chr7	70107689	70107689	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcaggtcaactttttgTgcatctgagtatctccttcc	7	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70107689	G	G	70107689	1	3	61	0	1	0	0	0	0	0	0	0	1230	1711	59	5		5	AUTS2	7	70107689	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	236497	70107689	89030974	3143	71388											
WBSCR17	64409	broad.mit.edu	37	chr7	70648184	70648185	+	Intron	DEL	GG	-	-													agtaatcgagcctagtgcttGggggcacattcactgtctag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70648185	-	-	70648184	6	5	61	0	1	1	0	1	0	0	0	0	17391	1363	47	0		0	WBSCR17	7	70648184	Intron	DEL	GG	TCGA-17-Z031-01A-01W-0746-08	540495	70648184	88490479	3144	71389											
WBSCR17	64409	broad.mit.edu	37	chr7	70846959	70846959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgggaaagaaaggcagaGggacaggagaactgtggggt	19	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70846959	T	T	70846959	1	4	61	0	1	0	0	0	0	0	0	0	17391	1015	35	2		2	WBSCR17	7	70846959	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	198775	70846959	88291704	3145	71390											
WBSCR17	64409	broad.mit.edu	37	chr7	70885875	70885875	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagaagagaggtttcatgtCtatttctctatgtttcaggg	11	5	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70885875	T	T	70885875	1	4	61	0	1	0	0	0	0	0	0	0	17391	928	32	4		4	WBSCR17	7	70885875	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38916	70885875	88252788	3146	71391											
WBSCR17	64409	broad.mit.edu	37	chr7	70961529	70961529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacatagaaatgatctccGccttcctttccacctgccct	6	15	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70961529	T	T	70961529	1	4	61	0	1	0	0	0	0	0	0	0	17391	1102	38	3		3	WBSCR17	7	70961529	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	75654	70961529	88177134	3147	71392											
WBSCR17	64409	broad.mit.edu	37	chr7	70964294	70964294	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacatttccaaatcccatcActttgagaggctgagatggg	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70964294	T	T	70964294	1	4	61	0	1	0	0	0	0	0	0	0	17391	174	6	5		5	WBSCR17	7	70964294	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2765	70964294	88174369	3148	71393											
WBSCR17	64409	broad.mit.edu	37	chr7	71036498	71036498	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctgatgaatgacagattCatttactccaccttgttcct	6	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71036498	A	A	71036498	1	1	61	0	1	0	0	0	0	0	0	0	17391	841	29	3		3	WBSCR17	7	71036498	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	72204	71036498	88102165	3149	71394											
CALN1	83698	broad.mit.edu	37	chr7	71488712	71488712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagacaccagtttggggCcaagaatggtcatgaattca	11	8	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71488712	A	A	71488712	3	1	61	1	0	0	0	0	1	0	0	0	2617	739	26	3	366	3	CALN1	7	71488712	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	452214	71488712	87649951	3150	71395											
TYW1B	441250	broad.mit.edu	37	chr7	72242666	72242666	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcataggggctcacgCctgtaatcccagcattttag	12	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72242666	A	A	72242666	1	1	61	0	1	0	0	0	0	0	0	0	16945	754	26	3		3	TYW1B	7	72242666	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	753954	72242666	86895997	3151	71396											
POM121	9883	broad.mit.edu	37	chr7	72397654	72397654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaggaatctaataacaaGggttttaatgctgctctttt	9	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72397654	T	T	72397654	1	4	61	0	1	0	0	0	0	0	0	0	12334	1015	35	2		2	POM121	7	72397654	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	154988	72397654	86741009	3152	71397											
TRIM50	135892	broad.mit.edu	37	chr7	72730668	72730668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgcgccttctaagggcCgggcctgcggcatctctgct	13	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72730668	A	A	72730668	3	1	61	1	0	0	0	0	1	0	0	0	16651	652	23	1	701	1	TRIM50	7	72730668	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	333014	72730668	86407995	3153	71398											
FKBP6	8468	broad.mit.edu	37	chr7	72743543	72743543	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaagactgctcagagcgcAggttctttgagttggctttg	15	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72743543	T	T	72743543	1	4	61	0	1	0	0	0	0	0	0	0	5969	203	7	5		5	FKBP6	7	72743543	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12875	72743543	86395120	3154	71399											
FZD9	8326	broad.mit.edu	37	chr7	72850102	72850102	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccctctttggagaaccccAcacacctctagccacacagg	6	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72850102	T	T	72850102	3	4	61	1	0	0	0	0	1	0	0	0	6197	159	6	5	1767	5	FZD9	7	72850102	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	106559	72850102	86288561	3155	71400											
CLIP2	7461	broad.mit.edu	37	chr7	73811555	73811555	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggcctgcgtgaaaagctgAccgggctggtatgtggggta	19	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73811555	T	T	73811555	3	4	61	1	0	0	0	0	1	0	0	0	3565	275	10	5	2922	5	CLIP2	7	73811555	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	961453	73811555	85327108	3156	71401											
GTF2I	2969	broad.mit.edu	37	chr7	74113371	74113371	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcggatgagtgtagatgctGtagaaattgaaacactcaga	11	5	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74113371	C	C	74113371	3	2	61	1	0	0	0	0	1	0	0	0	6932	1377	48	4	329	4	GTF2I	7	74113371	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	301816	74113371	85025292	3157	71402											
SPDYE5	442590	broad.mit.edu	37	chr7	75125945	75125945	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggttttgggttgggctcTagtgtgatcaactgcagaag	16	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75125945	A	A	75125945	1	1	61	0	1	0	0	0	0	0	0	0	15150	1537	53	5		5	SPDYE5	7	75125945	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1012574	75125945	84012718	3158	71403											
POR	5447	broad.mit.edu	37	chr7	75552101	75552101	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagcaaagaaaaatccCtttggctccagaaaatctcc	8	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75552101	T	T	75552101	1	4	61	0	1	0	0	0	0	0	0	0	12352	696	24	4		4	POR	7	75552101	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	426156	75552101	83586562	3159	71404											
SRCRB4D	136853	broad.mit.edu	37	chr7	76024714	76024714	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctggtcagccatgggctgTcaggggaggataggagggtc	18	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76024714	C	C	76024714	1	2	61	0	1	0	0	0	0	0	0	0	15255	1682	58	5		5	SRCRB4D	7	76024714	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	472613	76024714	83113949	3160	71405											
PION	54103	broad.mit.edu	37	chr7	77012025	77012025	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaagtatttccaaagtTgtgtttgatgactgtactat	8	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77012025	A	A	77012025	1	1	61	0	1	0	0	0	0	0	0	0	12029	1827	63	5		5	PION	7	77012025	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	987311	77012025	82126638	3161	71406											
PHTF2	57157	broad.mit.edu	37	chr7	77469443	77469443	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgtcatacaccccttgctCtgcaagtaaccagagtgcta	7	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77469443	T	T	77469443	1	4	61	0	1	0	0	0	0	0	0	0	11958	928	32	4		4	PHTF2	7	77469443	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	457418	77469443	81669220	3162	71407											
PHTF2	57157	broad.mit.edu	37	chr7	77578943	77578943	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtttatttcttttgaaaaGaaattgtttgaatcacattg	6	3	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77578943	T	T	77578943	1	4	61	0	1	0	0	0	0	0	0	0	11958	957	33	3		3	PHTF2	7	77578943	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	109500	77578943	81559720	3163	71408											
MAGI2	9863	broad.mit.edu	37	chr7	77649214	77649214	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgatggagagaatggagcGaggccgtcgtccagggagac	18	7	0	3	rs140932089	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77649214	A	A	77649214	2	1	61	1	0	0	0	0	0	0	0	1	9283	1045	37	4		4	MAGI2	7	77649214	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	70271	77649214	81489449	3164	71409											
MAGI2	9863	broad.mit.edu	37	chr7	77830555	77830555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactttgaaaatattaccgaCtgccacttatgggtggcacg	9	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77830555	A	A	77830555	1	1	61	0	1	0	0	0	0	0	0	0	9283	580	20	3		3	MAGI2	7	77830555	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	181341	77830555	81308108	3165	71410											
MAGI2	9863	broad.mit.edu	37	chr7	77830661	77830662	+	Intron	DNP	GG	TT	TT													ggctgtatcgttttcttcaaGgagctcaaaatcaaataatt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	77830662	TT	TT	77830661	1	4	61	0	1	0	0	0	0	0	0	0	9283	1015	35	2		2	MAGI2	7	77830661	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	106	77830661	81308002	3166	71411											
MAGI2	9863	broad.mit.edu	37	chr7	77973089	77973089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttctaaaccatgaaggaCcttacctgtttccatttttc	4	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77973089	A	A	77973089	1	1	61	0	1	0	0	0	0	0	0	0	9283	522	18	3		3	MAGI2	7	77973089	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	142428	77973089	81165574	3167	71412											
MAGI2	9863	broad.mit.edu	37	chr7	78190956	78190956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcctgatctgacatcaGggttgtggggtttgagagaa	15	6	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78190956	T	T	78190956	1	4	61	0	1	0	0	0	0	0	0	0	9283	1015	35	2		2	MAGI2	7	78190956	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	217867	78190956	80947707	3168	71413											
CD36	948	broad.mit.edu	37	chr7	80118075	80118075	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaactaagttgcttgaataAaattacagtatatattcatt	4	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80118075	C	C	80118075	1	2	61	0	1	0	0	0	0	0	0	0	3037	29	1	5		5	CD36	7	80118075	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1927119	80118075	79020588	3169	71414											
CD36	948	broad.mit.edu	37	chr7	80165959	80165959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accataactcagacctattcTatatctgaagaaggaagtta	6	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80165959	C	C	80165959	1	2	61	0	1	0	0	0	0	0	0	0	3037	1537	53	5		5	CD36	7	80165959	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	47884	80165959	78972704	3170	71415											
CD36	948	broad.mit.edu	37	chr7	80166532	80166532	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcccatttgcagcccttctCtgtgtaattctgccactgtc	7	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80166532	T	T	80166532	1	4	61	0	1	0	0	0	0	0	0	0	3037	928	32	4		4	CD36	7	80166532	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	573	80166532	78972131	3171	71416											
CD36	948	broad.mit.edu	37	chr7	80193074	80193074	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggatggggtgctgaccacCtgcgtgggaggatcccctgt	17	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80193074	G	G	80193074	1	3	61	0	1	0	0	0	0	0	0	0	3037	696	24	4		4	CD36	7	80193074	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26542	80193074	78945589	3172	71417											
CD36	948	broad.mit.edu	37	chr7	80299343	80299343	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctgatatttgcaggtaaGacagatactgaagtataagt	9	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80299343	A	A	80299343	1	1	61	0	1	0	0	0	0	0	0	0	3037	957	33	4		4	CD36	7	80299343	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	106269	80299343	78839320	3173	71418											
SEMA3C	10512	broad.mit.edu	37	chr7	80456808	80456808	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctggccagaaaacctgcTcagaaagaaaaataaaggtt	9	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80456808	A	A	80456808	1	1	61	0	1	0	0	0	0	0	0	0	14139	1566	54	5		5	SEMA3C	7	80456808	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	157465	80456808	78681855	3174	71419											
HGF	3082	broad.mit.edu	37	chr7	81388208	81388208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcatcttgtccatgggCatatggacaatatagaaaca	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81388208	A	A	81388208	1	1	61	0	1	0	0	0	0	0	0	0	7152	725	25	3		3	HGF	7	81388208	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	931400	81388208	77750455	3175	71420											
CACNA2D1	781	broad.mit.edu	37	chr7	81624234	81624234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttttctccactttcccCatcaatcatcttatttcgaa	2	12	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81624234	A	A	81624234	3	1	61	1	0	0	0	0	1	0	0	0	2574	594	21	2	1671	2	CACNA2D1	7	81624234	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	236026	81624234	77514429	3176	71421											
CACNA2D1	781	broad.mit.edu	37	chr7	81997678	81997678	+	Intron	DEL	C	-	-													tttaacattatatggctttgCcaattgctaaaattactttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81997678	-	-	81997678	6	5	61	0	1	1	0	1	0	0	0	0	2574	754	26	0		0	CACNA2D1	7	81997678	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	373444	81997678	77140985	3177	71422											
PCLO	27445	broad.mit.edu	37	chr7	82389931	82389931	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaatgagaagtttcaaatAtgaactacataatacagagc	7	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82389931	T	T	82389931	1	4	61	0	1	0	0	0	0	0	0	0	11677	464	16	5		5	PCLO	7	82389931	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	392253	82389931	76748732	3178	71423											
PCLO	27445	broad.mit.edu	37	chr7	82456010	82456010	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagaaatctaattaaacctAtctttccatcatacattttc	1	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456010	T	T	82456010	1	4	61	0	1	0	0	0	0	0	0	0	11677	464	16	5		5	PCLO	7	82456010	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	66079	82456010	76682653	3179	71424											
PCLO	27445	broad.mit.edu	37	chr7	82579666	82579666	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggactttagctccagaacttCtctttttgggttgtttttcc	8	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82579666	A	A	82579666	3	1	61	1	0	0	0	0	1	0	0	0	11677	913	32	3	5287	3	PCLO	7	82579666	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	123656	82579666	76558997	3180	71425											
PCLO	27445	broad.mit.edu	37	chr7	82584629	82584629	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatttataaactttttgTacttctattattttttccgg	5	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82584629	A	A	82584629	2	1	61	1	0	0	0	0	0	0	0	1	11677	1625	57	5		5	PCLO	7	82584629	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4963	82584629	76554034	3181	71426											
PCLO	27445	broad.mit.edu	37	chr7	82584925	82584925	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctttaataattcttcttCctctctcaattcttcttcct	0	14	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82584925	A	A	82584925	4	1	61	1	0	0	0	0	0	1	0	0	11677	864	30	3	10185	3	PCLO	7	82584925	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	296	82584925	76553738	3182	71427											
SEMA3E	9723	broad.mit.edu	37	chr7	83035185	83035185	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatacacagaaagcaagtttCtatgtgtcctagggataaag	9	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83035185	A	A	83035185	1	1	61	0	1	0	0	0	0	0	0	0	14141	928	32	3		3	SEMA3E	7	83035185	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	450260	83035185	76103478	3183	71428											
SEMA3E	9723	broad.mit.edu	37	chr7	83277771	83277771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaggcgtaaccgggggtGggtagtatcagctgtatgac	16	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83277771	T	T	83277771	3	4	61	1	0	0	0	0	1	0	0	0	14141	1348	47	2	2307	2	SEMA3E	7	83277771	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	242586	83277771	75860892	3184	71429											
SEMA3D	223117	broad.mit.edu	37	chr7	84628729	84628729	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtttttataggtaaggaAttcttttctttaaattaagt	6	2	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84628729	T	T	84628729	1	4	61	0	1	0	0	0	0	0	0	0	14140	116	4	5		5	SEMA3D	7	84628729	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1350958	84628729	74509934	3185	71430											
SEMA3D	223117	broad.mit.edu	37	chr7	84636208	84636208	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattccagaaaggttgagttAaattcaatgccaaaaatcac	6	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84636208	G	G	84636208	2	3	61	1	0	0	0	0	0	0	0	1	14140	359	13	5		5	SEMA3D	7	84636208	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	7479	84636208	74502455	3186	71431											
SEMA3D	223117	broad.mit.edu	37	chr7	84642094	84642094	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcatatcagagctgtacTtactgtcttcgatgtcccag	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84642094	G	G	84642094	1	3	61	0	1	0	0	0	0	0	0	0	14140	1624	56	5		5	SEMA3D	7	84642094	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5886	84642094	74496569	3187	71432											
SEMA3D	223117	broad.mit.edu	37	chr7	84666379	84666379	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcatcatcattcaatcAttcactgatgaattcaataa	3	8	6	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84666379	T	T	84666379	1	4	61	0	1	0	0	0	0	0	0	0	14140	232	8	5		5	SEMA3D	7	84666379	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	24285	84666379	74472284	3188	71433											
KIAA1324L	222223	broad.mit.edu	37	chr7	86522172	86522172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattggatataatgatcaAgtctagaattttcacaacaa	5	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86522172	G	G	86522172	1	3	61	0	1	0	0	0	0	0	0	0	8294	87	3	5		5	KIAA1324L	7	86522172	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1855793	86522172	72616491	3189	71434											
KIAA1324L	222223	broad.mit.edu	37	chr7	86526709	86526709	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaatgcctaccaatgtaAcattaagttaaatacaagct	4	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86526709	T	T	86526709	1	4	61	0	1	0	0	0	0	0	0	0	8294	58	2	5		5	KIAA1324L	7	86526709	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4537	86526709	72611954	3190	71435											
KIAA1324L	222223	broad.mit.edu	37	chr7	86547761	86547761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccgtccacttaccacCatgaagtacaaaacacagtc	6	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86547761	A	A	86547761	3	1	61	1	0	0	0	0	1	0	0	0	8294	594	21	2	1543	2	KIAA1324L	7	86547761	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21052	86547761	72590902	3191	71436											
ABCB4	5244	broad.mit.edu	37	chr7	87069063	87069063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagcagaaggatcttggGgttgcgaaccagggcacgtg	15	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87069063	T	T	87069063	3	4	61	1	0	0	0	0	1	0	0	0	43	1232	43	2	2269	2	ABCB4	7	87069063	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	521302	87069063	72069600	3192	71437											
ABCB4	5244	broad.mit.edu	37	chr7	87074148	87074148	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatacaagctcaaagacttCttttggcactaaaataataa	4	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87074148	T	T	87074148	1	4	61	0	1	0	0	0	0	0	0	0	43	928	32	4		4	ABCB4	7	87074148	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5085	87074148	72064515	3193	71438											
ABCB4	5244	broad.mit.edu	37	chr7	87076410	87076410	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtggatccataccagaaGgccagtgcatatgatgcata	11	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87076410	T	T	87076410	2	4	61	1	0	0	0	0	0	0	0	1	43	987	35	2		2	ABCB4	7	87076410	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2262	87076410	72062253	3194	71439											
ABCB4	5244	broad.mit.edu	37	chr7	87104814	87104814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaccacagcctcagaacCaagtacaccctctccggcgg	8	16	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87104814	A	A	87104814	1	1	61	0	1	0	0	0	0	0	0	0	43	609	21	2		2	ABCB4	7	87104814	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28404	87104814	72033849	3195	71440											
ABCB1	5243	broad.mit.edu	37	chr7	87144768	87144768	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgagaagaataacagtaAatttgaatgctgcaatactg	8	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87144768	C	C	87144768	1	2	61	0	1	0	0	0	0	0	0	0	40	29	1	5		5	ABCB1	7	87144768	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	39954	87144768	71993895	3196	71441											
ABCB1	5243	broad.mit.edu	37	chr7	87146093	87146093	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggtcttcctgtgttgCccaggctggagtgcagtagt	17	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87146093	T	T	87146093	1	4	61	0	1	0	0	0	0	0	0	0	40	754	26	4		4	ABCB1	7	87146093	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1325	87146093	71992570	3197	71442											
ABCB1	5243	broad.mit.edu	37	chr7	87148758	87148758	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggaaaatgtaattccaaaGatgtgtgctttcctcaaaga	8	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87148758	A	A	87148758	2	1	61	1	0	0	0	0	0	0	0	1	40	932	33	4		4	ABCB1	7	87148758	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2665	87148758	71989905	3198	71443											
ABCB1	5243	broad.mit.edu	37	chr7	87150937	87150937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagatccaaataccaagcGctcaagggactttgggtttg	12	8	1	1	rs17131983	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87150937	T	T	87150937	1	4	61	0	1	0	0	0	0	0	0	0	40	1102	38	3		3	ABCB1	7	87150937	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2179	87150937	71987726	3199	71444											
ABCB1	5243	broad.mit.edu	37	chr7	87170520	87170520	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagccagaggaggcaaacatCttttttcactatgtcagaaa	9	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87170520	A	A	87170520	1	1	61	0	1	0	0	0	0	0	0	0	40	928	32	3		3	ABCB1	7	87170520	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19583	87170520	71968143	3200	71445											
ABCB1	5243	broad.mit.edu	37	chr7	87170602	87170602	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggccaattacactgatGtttataaatccccccagttg	6	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87170602	A	A	87170602	1	1	61	0	1	0	0	0	0	0	0	0	40	1392	48	4		4	ABCB1	7	87170602	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	82	87170602	71968061	3201	71446											
ADAM22	53616	broad.mit.edu	37	chr7	87737491	87737491	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctttatttctgttttcagGgaggagagcactgttactac	9	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87737491	A	A	87737491	3	1	61	1	0	0	0	0	1	0	0	0	244	1246	43	4	409	4	ADAM22	7	87737491	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	566889	87737491	71401172	3202	71447											
ZNF804B	219578	broad.mit.edu	37	chr7	88709204	88709204	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcccatgtggccagtacActatgaagagtattaggaga	13	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88709204	G	G	88709204	1	3	61	0	1	0	0	0	0	0	0	0	18300	174	6	5		5	ZNF804B	7	88709204	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	971713	88709204	70429459	3203	71448											
C7orf63	79846	broad.mit.edu	37	chr7	89900878	89900878	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catcatacaagattcaaatgGctgaagttggaggattagca	10	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89900878	C	C	89900878	3	2	61	1	0	0	0	0	1	0	0	0	2434	1203	42	4	597	4	C7orf63	7	89900878	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1191674	89900878	69237785	3204	71449											
C7orf63	79846	broad.mit.edu	37	chr7	89939357	89939357	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattgtgtaaatggacttttAgatatttaccttttgccttt	6	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89939357	T	T	89939357	1	4	61	0	1	0	0	0	0	0	0	0	2434	435	15	5		5	C7orf63	7	89939357	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	38479	89939357	69199306	3205	71450											
AKAP9	10142	broad.mit.edu	37	chr7	91645288	91645288	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatagatttagacttgttTcttttgcagattgataaggg	11	3	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91645288	A	A	91645288	1	1	61	0	1	0	0	0	0	0	0	0	459	1798	62	5		5	AKAP9	7	91645288	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1705931	91645288	67493375	3206	71451											
AKAP9	10142	broad.mit.edu	37	chr7	91647754	91647757	+	Intron	DEL	ACAG	-	-													acacacacacacacacacacAcagagaaatattcaaaacta					rs66773601	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	91647757	-	-	91647754	6	5	61	0	1	1	0	1	0	0	0	0	459	174	6	0		0	AKAP9	7	91647754	Intron	DEL	ACAG	TCGA-17-Z031-01A-01W-0746-08	2466	91647754	67490909	3207	71452											
ANKIB1	54467	broad.mit.edu	37	chr7	91972513	91972513	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcacctccccagatgaaatCagcttatctcctggggattt	8	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91972513	A	A	91972513	2	1	61	1	0	0	0	0	0	0	0	1	630	816	29	3		3	ANKIB1	7	91972513	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	324759	91972513	67166150	3208	71453											
CDK6	1021	broad.mit.edu	37	chr7	92403901	92403901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatttttttaactatatacCgaattctaaaagttgtaatt	4	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92403901	T	T	92403901	1	4	61	0	1	0	0	0	0	0	0	0	3178	667	23	4		4	CDK6	7	92403901	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	431388	92403901	66734762	3209	71454											
CDK6	1021	broad.mit.edu	37	chr7	92423854	92423854	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttttgtgctgtgcctcaAcaccagctgttactgctgcc	9	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92423854	C	C	92423854	1	2	61	0	1	0	0	0	0	0	0	0	3178	58	2	5		5	CDK6	7	92423854	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19953	92423854	66714809	3210	71455											
SAMD9L	219285	broad.mit.edu	37	chr7	92765029	92765029	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attatctaattgtcccggatCatgattgtcactttcagggg	9	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92765029	A	A	92765029	3	1	61	1	0	0	0	0	1	0	0	0	13938	826	29	3	4502	3	SAMD9L	7	92765029	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	341175	92765029	66373634	3211	71456											
SAMD9L	219285	broad.mit.edu	37	chr7	92767318	92767318	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcatgcaaccactgagcCtagcagcttccacttgcctt	8	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92767318	A	A	92767318	1	1	61	0	1	0	0	0	0	0	0	0	13938	696	24	2		2	SAMD9L	7	92767318	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2289	92767318	66371345	3212	71457											
CCDC132	55610	broad.mit.edu	37	chr7	92938261	92938261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgtgaaaaggtgattGttcttaaattgtgtggtatt	12	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92938261	A	A	92938261	1	1	61	0	1	0	0	0	0	0	0	0	2793	1392	48	4		4	CCDC132	7	92938261	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	170943	92938261	66200402	3213	71458											
CALCR	799	broad.mit.edu	37	chr7	93063363	93063363	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaggaaattaactgcctgtCtgaatcatatttgccattgt	7	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93063363	G	G	93063363	1	3	61	0	1	0	0	0	0	0	0	0	2605	928	32	4		4	CALCR	7	93063363	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	125102	93063363	66075300	3214	71459											
CALCR	799	broad.mit.edu	37	chr7	93090015	93090015	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaaaactcgacggtagaAgtaaatatgattacacatgt	8	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93090015	C	C	93090015	1	2	61	0	1	0	0	0	0	0	0	0	2605	87	3	5		5	CALCR	7	93090015	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	26652	93090015	66048648	3215	71460											
PON1	5444	broad.mit.edu	37	chr7	95024020	95024020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctcgagaggcattcacCctttctctgtagaagataaa	7	10	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95024020	A	A	95024020	3	1	61	1	0	0	0	0	1	0	0	0	12343	622	22	2		2	PON1	7	95024020	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1934005	95024020	64114643	3216	71461											
ASB4	51666	broad.mit.edu	37	chr7	95143524	95143524	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgtcatttctttctctactCagtctgggcttccttgttga	7	11	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95143524	T	T	95143524	1	4	61	0	1	0	0	0	0	0	0	0	1029	841	29	4		4	ASB4	7	95143524	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	119504	95143524	63995139	3217	71462											
DYNC1I1	1780	broad.mit.edu	37	chr7	95457225	95457225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtttgatagtcactggGggtggaggggatggaagggg	20	3	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95457225	T	T	95457225	1	4	61	0	1	0	0	0	0	0	0	0	4882	1247	43	2		2	DYNC1I1	7	95457225	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	313701	95457225	63681438	3218	71463											
DYNC1I1	1780	broad.mit.edu	37	chr7	95616619	95616619	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtttcagtttcaattcTctactcagttatttgtattt	6	6	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95616619	A	A	95616619	1	1	61	0	1	0	0	0	0	0	0	0	4882	1566	54	5		5	DYNC1I1	7	95616619	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	159394	95616619	63522044	3219	71464											
TAC1	6863	broad.mit.edu	37	chr7	97362112	97362112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggagctgtcaccttcccaCgcaacagcaccctagttaac	8	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97362112	A	A	97362112	1	1	61	0	1	0	0	0	0	0	0	0	15617	551	19	3		3	TAC1	7	97362112	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1745493	97362112	61776551	3220	71465											
TAC1	6863	broad.mit.edu	37	chr7	97369110	97369110	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtttaaaataaattactaTatgccctgaactttagttgt	6	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97369110	A	A	97369110	1	1	61	0	1	0	0	0	0	0	0	0	15617	1421	49	5		5	TAC1	7	97369110	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6998	97369110	61769553	3221	71466											
ASNS	440	broad.mit.edu	37	chr7	97481701	97481701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcgttcaaagacttgaCggtagtaatatccttctttg	9	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97481701	A	A	97481701	3	1	61	1	0	0	0	0	1	0	0	0	1052	536	19	3	133	3	ASNS	7	97481701	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	112591	97481701	61656962	3222	71467											
OCM2	4951	broad.mit.edu	37	chr7	97614248	97614248	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgattatccctttctctcTtttctccagagactggggct	9	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97614248	G	G	97614248	1	3	61	0	1	0	0	0	0	0	0	0	10917	1624	56	5		5	OCM2	7	97614248	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	132547	97614248	61524415	3223	71468											
LMTK2	22853	broad.mit.edu	37	chr7	97821251	97821251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgacgagcgcagccggGgccacctggacgaaggcttg	15	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97821251	T	T	97821251	3	4	61	1	0	0	0	0	1	0	0	0	8933	1232	43	2	1516	2	LMTK2	7	97821251	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	207003	97821251	61317412	3224	71469											
TRRAP	8295	broad.mit.edu	37	chr7	98556869	98556869	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtgaagatctgagacaGgtgtaagggccagggcacag	17	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98556869	T	T	98556869	1	4	61	0	1	0	0	0	0	0	0	0	16726	1015	35	2		2	TRRAP	7	98556869	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	735618	98556869	60581794	3225	71470											
TRRAP	8295	broad.mit.edu	37	chr7	98558800	98558800	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaataattaatccagtgctAgattttgccagactcttgtt	6	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98558800	G	G	98558800	1	3	61	0	1	0	0	0	0	0	0	0	16726	435	15	5		5	TRRAP	7	98558800	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1931	98558800	60579863	3226	71471											
CYP3A5	1577	broad.mit.edu	37	chr7	99261766	99261766	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatcattgaaaatgcaaaCtttacctggagcaattataa	6	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99261766	G	G	99261766	1	3	61	0	1	0	0	0	0	0	0	0	4213	580	20	4		4	CYP3A5	7	99261766	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	702966	99261766	59876897	3227	71472											
CYP3A5	1577	broad.mit.edu	37	chr7	99277430	99277430	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaggaaacaaagagaggAgtttggacagttactcacag	11	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99277430	C	C	99277430	1	2	61	0	1	0	0	0	0	0	0	0	4213	319	11	5		5	CYP3A5	7	99277430	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	15664	99277430	59861233	3228	71473											
GAL3ST4	79690	broad.mit.edu	37	chr7	99758406	99758406	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttgcgagcgtagtggtcCccacgggccccaggcctgta	14	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99758406	A	A	99758406	2	1	61	1	0	0	0	0	0	0	0	1	6262	610	22	2		2	GAL3ST4	7	99758406	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	480976	99758406	59380257	3229	71474											
PILRB	29990	broad.mit.edu	37	chr7	99951101	99951101	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacccccgacagggggccGtcctggtgggcatcactccc	12	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99951101	A	A	99951101	1	1	61	0	1	0	0	0	0	0	0	0	12021	1160	40	4		4	PILRB	7	99951101	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	192695	99951101	59187562	3230	71475											
ZCWPW1	55063	broad.mit.edu	37	chr7	99999350	99999350	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaggaatcattctgtttcTatagtgtgtgctgggtgcag	12	6	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99999350	A	A	99999350	1	1	61	0	1	0	0	0	0	0	0	0	17723	1537	53	5		5	ZCWPW1	7	99999350	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	48249	99999350	59139313	3231	71476											
FBXO24	26261	broad.mit.edu	37	chr7	100187837	100187837	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcccagtcagagaccttgTtgccctcggccagacctgcc	9	18	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100187837	C	C	100187837	3	2	61	1	0	0	0	0	1	0	0	0	5792	1725	60	5	346	5	FBXO24	7	100187837	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	188487	100187837	58950826	3232	71477											
EPO	2056	broad.mit.edu	37	chr7	100319630	100319630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgagaatatcactgtcCcagacaccaaagttaatttc	6	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100319630	A	A	100319630	3	1	61	1	0	0	0	0	1	0	0	0	5230	623	22	2	215	2	EPO	7	100319630	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	131793	100319630	58819033	3233	71478											
ZAN	7455	broad.mit.edu	37	chr7	100352835	100352836	+	Intron	INS	-	G	G													atgaaagcatgacagaggctINSgttttccccttagagcgctg					rs145118358	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100352836	G	G	100352835	6	5	61	0	1	1	1	0	0	0	0	0	17640	1595	55	0		0	ZAN	7	100352835	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	33205	100352835	58785828	3234	71479											
ZAN	7455	broad.mit.edu	37	chr7	100388864	100388864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagataggcctggatcctcCcaattccgtcattccctctc	7	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100388864	A	A	100388864	1	1	61	0	1	0	0	0	0	0	0	0	17640	638	22	2		2	ZAN	7	100388864	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36029	100388864	58749799	3235	71480											
ZAN	7455	broad.mit.edu	37	chr7	100389700	100389700	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacagcacccaggcctgtAgggtgctggcagacccccag	13	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100389700	G	G	100389700	3	3	61	1	0	0	0	0	1	0	0	0	17640	411	15	5	7799	5	ZAN	7	100389700	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	836	100389700	58748963	3236	71481											
ZAN	7455	broad.mit.edu	37	chr7	100391854	100391854	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggaggtctgcaccctggGgaaccacacccaaggctgct	15	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100391854	C	C	100391854	3	2	61	1	0	0	0	0	1	0	0	0	17640	1232	43	4	8333	4	ZAN	7	100391854	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2154	100391854	58746809	3237	71482											
SRRT	51593	broad.mit.edu	37	chr7	100484696	100484696	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagctcctcctttacctgcGcatcgtgcattccttggatt	7	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100484696	C	C	100484696	3	2	61	1	0	0	0	0	1	0	0	0	15290	1087	38	4	1904	4	SRRT	7	100484696	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	92842	100484696	58653967	3238	71483											
MUC17	140453	broad.mit.edu	37	chr7	100678788	100678788	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaacaactcctgttgacaAcagcacacctgtgaccactt	5	14	1	2	rs145039008		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100678788	G	G	100678788	3	3	61	1	0	0	0	0	1	0	0	0	10068	43	2	5	4101	5	MUC17	7	100678788	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	194092	100678788	58459875	3239	71484											
MUC17	140453	broad.mit.edu	37	chr7	100680177	100680177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaattctgaggctagcaCcctttcaacaactcctgttg	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100680177	A	A	100680177	3	1	61	1	0	0	0	0	1	0	0	0	10068	507	18	3	5490	3	MUC17	7	100680177	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1389	100680177	58458486	3240	71485											
MUC17	140453	broad.mit.edu	37	chr7	100684661	100684661	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attctcaagccagttcatctCctccaattgctgacggtact	6	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100684661	T	T	100684661	3	4	61	1	0	0	0	0	1	0	0	0	10068	855	30	4	9974	4	MUC17	7	100684661	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4484	100684661	58454002	3241	71486											
PLOD3	8985	broad.mit.edu	37	chr7	100856047	100856047	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagcgatgcccccaccgcCccccagtccgctgtccttgt	10	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100856047	T	T	100856047	1	4	61	0	1	0	0	0	0	0	0	0	12198	638	22	4		4	PLOD3	7	100856047	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	171386	100856047	58282616	3242	71487											
MYL10	93408	broad.mit.edu	37	chr7	101257133	101257133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggggctgaccctgccagCccccccgatggccaagtagc	12	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101257133	A	A	101257133	1	1	61	0	1	0	0	0	0	0	0	0	10138	754	26	3		3	MYL10	7	101257133	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	401086	101257133	57881530	3243	71488											
MYL10	93408	broad.mit.edu	37	chr7	101259405	101259405	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggccccccagctcctggcTtctgggagaggagactgggc	16	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101259405	G	G	101259405	1	3	61	0	1	0	0	0	0	0	0	0	10138	1624	56	5		5	MYL10	7	101259405	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2272	101259405	57879258	3244	71489											
SLC26A5	375611	broad.mit.edu	37	chr7	103033314	103033314	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattacaggcgtgagccagaCattggtgattgtactgctat	12	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103033314	T	T	103033314	1	4	61	0	1	0	0	0	0	0	0	0	14634	493	17	4		4	SLC26A5	7	103033314	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1773909	103033314	56105349	3245	71490											
RELN	5649	broad.mit.edu	37	chr7	103113385	103113385	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaaacaggatagaggcaggGaaggaaaggaaaaagagcat	14	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103113385	A	A	103113385	1	1	61	0	1	0	0	0	0	0	0	0	13328	1189	41	4		4	RELN	7	103113385	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	80071	103113385	56025278	3246	71491											
RELN	5649	broad.mit.edu	37	chr7	103130997	103130997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagggaagatgggagaGggcaccagggctgcatgtaa	18	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103130997	T	T	103130997	1	4	61	0	1	0	0	0	0	0	0	0	13328	1015	35	2		2	RELN	7	103130997	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17612	103130997	56007666	3247	71492											
RELN	5649	broad.mit.edu	37	chr7	103141204	103141204	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccttaccttcagagtgtgGgtcaagtagcagtttggccc	11	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103141204	T	T	103141204	2	4	61	1	0	0	0	0	0	0	0	1	13328	1219	43	2		2	RELN	7	103141204	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10207	103141204	55997459	3248	71493											
RELN	5649	broad.mit.edu	37	chr7	103197708	103197708	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgcataagagaacttaTgtttacatggaagctttata	7	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103197708	C	C	103197708	1	2	61	0	1	0	0	0	0	0	0	0	13328	1479	51	5		5	RELN	7	103197708	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	56504	103197708	55940955	3249	71494											
RELN	5649	broad.mit.edu	37	chr7	103206998	103206998	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtgcaaggtgggtatggaTacttcatgacctaaaagcta	11	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103206998	A	A	103206998	1	1	61	0	1	0	0	0	0	0	0	0	13328	1421	49	5		5	RELN	7	103206998	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9290	103206998	55931665	3250	71495											
RELN	5649	broad.mit.edu	37	chr7	103234239	103234239	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtggcagcacagaaggTttcatttttaaccattcctt	9	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103234239	A	A	103234239	3	1	61	1	0	0	0	0	1	0	0	0	13328	1725	60	5	6736	5	RELN	7	103234239	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27241	103234239	55904424	3251	71496											
RELN	5649	broad.mit.edu	37	chr7	103322550	103322550	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatacacagcatgggagatAgcaattacttaccctgtagg	9	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103322550	C	C	103322550	1	2	61	0	1	0	0	0	0	0	0	0	13328	435	15	5		5	RELN	7	103322550	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	88311	103322550	55816113	3252	71497											
RELN	5649	broad.mit.edu	37	chr7	103338364	103338364	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtcgagactatcttctAaaacgacttgtctgtgagct	10	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103338364	G	G	103338364	3	3	61	1	0	0	0	0	1	0	0	0	13328	372	13	5	9527	5	RELN	7	103338364	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	15814	103338364	55800299	3253	71498											
RELN	5649	broad.mit.edu	37	chr7	103529819	103529819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaggacagaaggtcagCcacccttatttctcttttgg	9	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103529819	A	A	103529819	1	1	61	0	1	0	0	0	0	0	0	0	13328	754	26	3		3	RELN	7	103529819	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	191455	103529819	55608844	3254	71499											
LHFPL3	375612	broad.mit.edu	37	chr7	104294216	104294216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactttttcatgatgttcaCctgcaaaaattcatccctcc	5	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104294216	A	A	104294216	1	1	61	0	1	0	0	0	0	0	0	0	8838	522	18	3		3	LHFPL3	7	104294216	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	764397	104294216	54844447	3255	71500											
PUS7	54517	broad.mit.edu	37	chr7	105099703	105099703	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatcatcatatgcaacgacTtcccttcaaaacatatgaat	5	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105099703	G	G	105099703	3	3	61	1	0	0	0	0	1	0	0	0	12941	1606	56	5	232	5	PUS7	7	105099703	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	805487	105099703	54038960	3256	71501											
ATXN7L1	222255	broad.mit.edu	37	chr7	105447456	105447456	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagccttcttttcccttttGccatcttcacctggcctcct	5	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105447456	A	A	105447456	1	1	61	0	1	0	0	0	0	0	0	0	1220	1334	46	4		4	ATXN7L1	7	105447456	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	347753	105447456	53691207	3257	71502											
PIK3CG	5294	broad.mit.edu	37	chr7	106509636	106509636	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccggaaggggaccgggttCgagcagaaatgcccaaccag	14	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106509636	A	A	106509636	2	1	61	1	0	0	0	0	0	0	0	1	12011	876	31	3		3	PIK3CG	7	106509636	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1062180	106509636	52629027	3258	71503											
PIK3CG	5294	broad.mit.edu	37	chr7	106521523	106521524	+	Intron	DNP	GG	TT	TT													gcctttccttctctgggccaGgcactagcccacaatctcca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	106521524	TT	TT	106521523	1	4	61	0	1	0	0	0	0	0	0	0	12011	1015	35	2		2	PIK3CG	7	106521523	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	11887	106521523	52617140	3259	71504											
PRKAR2B	5577	broad.mit.edu	37	chr7	106800054	106800054	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatggagcaagacctgtaGtgacaaaattacacagtagt	10	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106800054	A	A	106800054	1	1	61	0	1	0	0	0	0	0	0	0	12612	1044	36	4		4	PRKAR2B	7	106800054	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	278531	106800054	52338609	3260	71505											
SLC26A4	5172	broad.mit.edu	37	chr7	107315473	107315473	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcacaacagctgctgcCttccaagtgctggtctcaca	9	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107315473	A	A	107315473	2	1	61	1	0	0	0	0	0	0	0	1	14633	668	24	2		2	SLC26A4	7	107315473	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	515419	107315473	51823190	3261	71506											
SLC26A3	1811	broad.mit.edu	37	chr7	107415236	107415236	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttactggtgtcacttgtaGcaagccttgcttctgcagtt	9	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107415236	C	C	107415236	3	2	61	1	0	0	0	0	1	0	0	0	14632	962	34	4	559	4	SLC26A3	7	107415236	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	99763	107415236	51723427	3262	71507											
SLC26A3	1811	broad.mit.edu	37	chr7	107416863	107416863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccagaattcagtaagattAcaaggaaaaaaattaaataa	5	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107416863	T	T	107416863	1	4	61	0	1	0	0	0	0	0	0	0	14632	406	14	5		5	SLC26A3	7	107416863	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1627	107416863	51721800	3263	71508											
LAMB1	3912	broad.mit.edu	37	chr7	107600081	107600081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagcaatggaaccctgcCacaatggctgagttaatctg	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107600081	A	A	107600081	1	1	61	0	1	0	0	0	0	0	0	0	8682	609	21	2		2	LAMB1	7	107600081	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	183218	107600081	51538582	3264	71509											
LAMB4	22798	broad.mit.edu	37	chr7	107692774	107692774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggtgaaaaaaatgccacCaaaattgccctcattgttag	7	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107692774	A	A	107692774	1	1	61	0	1	0	0	0	0	0	0	0	8685	609	21	2		2	LAMB4	7	107692774	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	92693	107692774	51445889	3265	71510											
LAMB4	22798	broad.mit.edu	37	chr7	107738772	107738772	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgacagagcgagactcCatctcaaaaacagacaaacc	9	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107738772	T	T	107738772	1	4	61	0	1	0	0	0	0	0	0	0	8685	609	21	4		4	LAMB4	7	107738772	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	45998	107738772	51399891	3266	71511											
LAMB4	22798	broad.mit.edu	37	chr7	107746934	107746934	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaaagctgatatgaaAaatataaaggaattcatacc	5	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107746934	T	T	107746934	1	4	61	0	1	0	0	0	0	0	0	0	8685	29	1	5		5	LAMB4	7	107746934	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8162	107746934	51391729	3267	71512											
C7orf66	154907	broad.mit.edu	37	chr7	108524515	108524516	+	Missense_Mutation	DNP	CC	AA	AA													attgcaaggcaactgaggctCcaaagtctctgatgagtgag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	108524516	AA	AA	108524515	3	1	61	1	0	0	0	0	1	0	0	0	2437	856	30	3	280	3	C7orf66	7	108524515	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	777581	108524515	50614148	3268	71513											
IMMP2L	83943	broad.mit.edu	37	chr7	110303875	110303875	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttaatccaggtttaacatCccagggagaagtgatgatga	10	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110303875	T	T	110303875	1	4	61	0	1	0	0	0	0	0	0	0	7787	870	30	4		4	IMMP2L	7	110303875	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1779360	110303875	48834788	3269	71514											
LRRN3	54674	broad.mit.edu	37	chr7	110763476	110763476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttatcaatcttcgcagCctggttatagctggtataaa	7	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763476	A	A	110763476	3	1	61	1	0	0	0	0	1	0	0	0	9123	738	26	3	650	3	LRRN3	7	110763476	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	459601	110763476	48375187	3270	71515											
IMMP2L	83943	broad.mit.edu	37	chr7	111051643	111051643	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcaacaggctgatttagacAtcgaggacttcactatggat	9	8	2	2	rs139249055	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111051643	T	T	111051643	1	4	61	0	1	0	0	0	0	0	0	0	7787	232	8	5		5	IMMP2L	7	111051643	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	288167	111051643	48087020	3271	71516											
DOCK4	9732	broad.mit.edu	37	chr7	111424283	111424283	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaaaatatacaagcatctCacagctcaaagacatttttt	3	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111424283	T	T	111424283	1	4	61	0	1	0	0	0	0	0	0	0	4729	841	29	4		4	DOCK4	7	111424283	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	372640	111424283	47714380	3272	71517											
DOCK4	9732	broad.mit.edu	37	chr7	111575871	111575871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaagaatgtccgtatctgGtaatgcctgaccacctacct	8	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111575871	T	T	111575871	1	4	61	0	1	0	0	0	0	0	0	0	4729	1276	44	3		3	DOCK4	7	111575871	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	151588	111575871	47562792	3273	71518											
TMEM168	64418	broad.mit.edu	37	chr7	112407239	112407239	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgcttattaatatcccgcTttggggtccaaattaagatt	8	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112407239	A	A	112407239	1	1	61	0	1	0	0	0	0	0	0	0	16206	1624	56	5		5	TMEM168	7	112407239	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	831368	112407239	46731424	3274	71519											
GPR85	54329	broad.mit.edu	37	chr7	112724050	112724050	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttccaaatcctgctagccAattggcagctgcctggccac	8	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112724050	G	G	112724050	3	3	61	1	0	0	0	0	1	0	0	0	6780	130	5	5	389	5	GPR85	7	112724050	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	316811	112724050	46414613	3275	71520											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518804	113518804	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagggtataatgtgaatcAtcatttctcccttcatgtgg	8	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113518804	T	T	113518804	3	4	61	1	0	0	0	0	1	0	0	0	12472	214	8	5	1029	5	PPP1R3A	7	113518804	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	794754	113518804	45619859	3276	71521											
FOXP2	93986	broad.mit.edu	37	chr7	114019590	114019590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgagattttctcgggagGggtgccttcgacatcattaa	12	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114019590	T	T	114019590	1	4	61	0	1	0	0	0	0	0	0	0	6087	1247	43	2		2	FOXP2	7	114019590	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	500786	114019590	45119073	3277	71522											
FOXP2	93986	broad.mit.edu	37	chr7	114268649	114268649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcacccctcagcaaatgCagcagatccttcagcaacaa	6	14	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114268649	A	A	114268649	3	1	61	1	0	0	0	0	1	0	0	0	6087	711	25	3	402	3	FOXP2	7	114268649	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	249059	114268649	44870014	3278	71523											
FOXP2	93986	broad.mit.edu	37	chr7	114298122	114298122	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttgggcctttgcagcTaaatctggtgtctagtgtca	10	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114298122	G	G	114298122	3	3	61	1	0	0	0	0	1	0	0	0	6087	1536	53	5	1473	5	FOXP2	7	114298122	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29473	114298122	44840541	3279	71524											
FOXP2	93986	broad.mit.edu	37	chr7	114299793	114299793	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagatagcacaaggaacaTttatttacatgacataagca	6	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114299793	G	G	114299793	1	3	61	0	1	0	0	0	0	0	0	0	6087	1508	52	5		5	FOXP2	7	114299793	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1671	114299793	44838870	3280	71525											
TFEC	22797	broad.mit.edu	37	chr7	115580862	115580863	+	Nonsense_Mutation	DNP	GG	TT	TT													ctgagacacagtcagttgttGgcaatagtctactgaattct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	115580863	TT	TT	115580862	4	4	61	1	0	0	0	0	0	1	0	0	15925	1357	47	2	260	2	TFEC	7	115580862	Nonsense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	1281069	115580862	43557801	3281	71526											
TFEC	22797	broad.mit.edu	37	chr7	115624568	115624568	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccaggtgtgctgggacCtacaagatcaaaattaaaca	8	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115624568	A	A	115624568	5	1	61	1	0	0	0	0	0	0	1	0	15925	695	24	2		2	TFEC	7	115624568	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	43706	115624568	43514095	3282	71527											
TFEC	22797	broad.mit.edu	37	chr7	115725165	115725165	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagcagggcagaaggaacAgcatatgcaaagtcttatta	11	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115725165	T	T	115725165	1	4	61	0	1	0	0	0	0	0	0	0	15925	203	7	5		5	TFEC	7	115725165	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	100597	115725165	43413498	3283	71528											
CAV1	857	broad.mit.edu	37	chr7	116091080	116091080	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcctaaatgtagctctcAgattcccaaagcactggcca	6	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116091080	G	G	116091080	1	3	61	0	1	0	0	0	0	0	0	0	2719	203	7	5		5	CAV1	7	116091080	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	365915	116091080	43047583	3284	71529											
ST7	7982	broad.mit.edu	37	chr7	116830760	116830760	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcactcagaggttccatgcAgtagaagtttggagagctca	12	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116830760	T	T	116830760	1	4	61	0	1	0	0	0	0	0	0	0	15347	203	7	5		5	ST7	7	116830760	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	739680	116830760	42307903	3285	71530											
WNT2	7472	broad.mit.edu	37	chr7	116955360	116955360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgatggcaaatacaactCcagctgaggagatggcataa	12	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116955360	A	A	116955360	3	1	61	1	0	0	0	0	1	0	0	0	17513	855	30	3	741	3	WNT2	7	116955360	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	124600	116955360	42183303	3286	71531											
ASZ1	136991	broad.mit.edu	37	chr7	117024926	117024926	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttaaagcctgtaagtaggGggaaaagaagattgtttaaa	12	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117024926	A	A	117024926	1	1	61	0	1	0	0	0	0	0	0	0	1073	1247	43	4		4	ASZ1	7	117024926	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69566	117024926	42113737	3287	71532											
CFTR	1080	broad.mit.edu	37	chr7	117175518	117175518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaattatgttttcaaaaaGcccactttagtaaaaccagg	5	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117175518	T	T	117175518	1	4	61	0	1	0	0	0	0	0	0	0	3324	986	34	3		3	CFTR	7	117175518	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	150592	117175518	41963145	3288	71533											
ANKRD7	56311	broad.mit.edu	37	chr7	117874591	117874591	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagtgaaaacaaatccccaTtgattaaggtatgccatagt	7	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117874591	A	A	117874591	3	1	61	1	0	0	0	0	1	0	0	0	686	1490	52	5	292	5	ANKRD7	7	117874591	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	699073	117874591	41264072	3289	71534											
ING3	54556	broad.mit.edu	37	chr7	120607820	120607821	+	Intron	DNP	GG	TT	TT													cctggttaaagtatacatatGgagaaagaagaaaaaggaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	120607821	TT	TT	120607820	1	4	61	0	1	0	0	0	0	0	0	0	7807	1363	47	2		2	ING3	7	120607820	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	2733229	120607820	38530843	3290	71535											
C7orf58	79974	broad.mit.edu	37	chr7	120737676	120737676	+	Intron	DEL	C	-	-													atgtaccctgcagtttaataCagcatactctattttcaaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120737676	-	-	120737676	6	5	61	0	1	1	0	1	0	0	0	0	2430	493	17	0		0	C7orf58	7	120737676	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	129856	120737676	38400987	3291	71536											
C7orf58	79974	broad.mit.edu	37	chr7	120797604	120797604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagtcttgtgttccaatGtcacactgaactttggagtt	11	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120797604	T	T	120797604	1	4	61	0	1	0	0	0	0	0	0	0	2430	1392	48	3		3	C7orf58	7	120797604	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59928	120797604	38341059	3292	71537											
C7orf58	79974	broad.mit.edu	37	chr7	120797635	120797635	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttggagttaggaggatctTtgacatctaacacctcaccc	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120797635	G	G	120797635	1	3	61	0	1	0	0	0	0	0	0	0	2430	1856	64	5		5	C7orf58	7	120797635	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31	120797635	38341028	3293	71538											
C7orf58	79974	broad.mit.edu	37	chr7	120841958	120841958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatattccaccactgatGgcaattttttaatgttagat	5	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120841958	T	T	120841958	1	4	61	0	1	0	0	0	0	0	0	0	2430	1363	47	2		2	C7orf58	7	120841958	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44323	120841958	38296705	3294	71539											
C7orf58	79974	broad.mit.edu	37	chr7	120884572	120884572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatagcctgaacaattccCgctccaaatgttcagttttc	6	11	1	2	rs139350642	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120884572	A	A	120884572	1	1	61	0	1	0	0	0	0	0	0	0	2430	667	23	1		1	C7orf58	7	120884572	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42614	120884572	38254091	3295	71540											
C7orf58	79974	broad.mit.edu	37	chr7	120887602	120887602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggaggaggctggtaaccCtgtccagggtacccaaacac	14	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120887602	A	A	120887602	1	1	61	0	1	0	0	0	0	0	0	0	2430	696	24	2		2	C7orf58	7	120887602	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3030	120887602	38251061	3296	71541											
C7orf58	79974	broad.mit.edu	37	chr7	120906837	120906837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttaattccaatcacctgCaaattattcacaaagttttg	5	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120906837	A	A	120906837	3	1	61	1	0	0	0	0	1	0	0	0	2430	711	25	3	2728	3	C7orf58	7	120906837	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19235	120906837	38231826	3297	71542											
C7orf58	79974	broad.mit.edu	37	chr7	120935783	120935783	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctaggagccaagcgctgCacatcgcacacatttgggat	12	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120935783	A	A	120935783	1	1	61	0	1	0	0	0	0	0	0	0	2430	725	25	3		3	C7orf58	7	120935783	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28946	120935783	38202880	3298	71543											
FEZF1	389549	broad.mit.edu	37	chr7	121944462	121944462	+	Frame_Shift_Del	DEL	G	-	-													ggagcagtcgctaacattttGgtagtcgcgttgtggcagct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121944462	-	-	121944462	7	5	61	1	0	1	0	1	0	0	0	0	5882	1335	47	0	1413	0	FEZF1	7	121944462	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	1008679	121944462	37194201	3299	71544											
TAS2R16	50833	broad.mit.edu	37	chr7	122635622	122635622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaattaggctgctctgcaCaataattgtcaaggactcaa	7	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122635622	A	A	122635622	3	1	61	1	0	0	0	0	1	0	0	0	15688	478	17	3	812	3	TAS2R16	7	122635622	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	691160	122635622	36503041	3300	71545											
SLC13A1	6561	broad.mit.edu	37	chr7	122757708	122757708	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagtaaaattttgagggtaGacacgaaacataaaaaaaaa	7	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122757708	C	C	122757708	1	2	61	0	1	0	0	0	0	0	0	0	14504	957	33	4		4	SLC13A1	7	122757708	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	122086	122757708	36380955	3301	71546											
SLC13A1	6561	broad.mit.edu	37	chr7	122765856	122765856	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtggtgtaggttatttatCctcaataatctgccctaaaa	8	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122765856	A	A	122765856	1	1	61	0	1	0	0	0	0	0	0	0	14504	870	30	3		3	SLC13A1	7	122765856	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8148	122765856	36372807	3302	71547											
LMOD2	442721	broad.mit.edu	37	chr7	123303145	123303145	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aataaaaaattctctgaggtCagtgcaagagaagaaaatgg	10	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123303145	G	G	123303145	4	3	61	1	0	0	0	0	0	1	0	0	8931	838	29	4	1511	4	LMOD2	7	123303145	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	537289	123303145	35835518	3303	71548											
HYAL4	23553	broad.mit.edu	37	chr7	123517226	123517226	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgagataattgagtttaaaGggaattgtgtggcctctagc	13	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123517226	C	C	123517226	1	2	61	0	1	0	0	0	0	0	0	0	7536	1015	35	4		4	HYAL4	7	123517226	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	214081	123517226	35621437	3304	71549											
GPR37	2861	broad.mit.edu	37	chr7	124386859	124386859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgtctgctgtgaaaccCctgtagccatgtaggcagta	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124386859	A	A	124386859	3	1	61	1	0	0	0	0	1	0	0	0	6756	623	22	2	283	2	GPR37	7	124386859	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	869633	124386859	34751804	3305	71550											
GRM8	2918	broad.mit.edu	37	chr7	126086472	126086472	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgttggtaagcctaacagTaggagataaagcaaataaca	9	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126086472	A	A	126086472	1	1	61	0	1	0	0	0	0	0	0	0	6869	1653	57	5		5	GRM8	7	126086472	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1699613	126086472	33052191	3306	71551											
GRM8	2918	broad.mit.edu	37	chr7	126141604	126141604	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatagaagaaaagggagaagGctgacaggtcagcaacagtg	14	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126141604	A	A	126141604	1	1	61	0	1	0	0	0	0	0	0	0	6869	1218	42	4		4	GRM8	7	126141604	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	55132	126141604	32997059	3307	71552											
GRM8	2918	broad.mit.edu	37	chr7	126303192	126303192	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagcagaccaatatcaagttCcaaagttgaatcagtaatac	7	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126303192	G	G	126303192	1	3	61	0	1	0	0	0	0	0	0	0	6869	870	30	4		4	GRM8	7	126303192	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	161588	126303192	32835471	3308	71553											
GRM8	2918	broad.mit.edu	37	chr7	126358582	126358582	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttgctgctgtgtggtGgaggccaggacttttcaggg	16	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126358582	T	T	126358582	1	4	61	0	1	0	0	0	0	0	0	0	6869	1363	47	2		2	GRM8	7	126358582	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	55390	126358582	32780081	3309	71554											
GRM8	2918	broad.mit.edu	37	chr7	126539893	126539893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactttctttctctcaaaaCttcttgaaacagcatccttt	2	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126539893	A	A	126539893	1	1	61	0	1	0	0	0	0	0	0	0	6869	580	20	3		3	GRM8	7	126539893	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	181311	126539893	32598770	3310	71555											
PAX4	5078	broad.mit.edu	37	chr7	127253789	127253789	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgaggactctctgaccctCcatctgtcccagcccagcac	7	18	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127253789	A	A	127253789	1	1	61	0	1	0	0	0	0	0	0	0	11575	870	30	3		3	PAX4	7	127253789	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	713896	127253789	31884874	3311	71556											
PAX4	5078	broad.mit.edu	37	chr7	127255363	127255363	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaagtcccagaagccctcaGagcctgcaacagccccaggc	9	18	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127255363	T	T	127255363	1	4	61	0	1	0	0	0	0	0	0	0	11575	957	33	3		3	PAX4	7	127255363	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1574	127255363	31883300	3312	71557											
LRRC4	64101	broad.mit.edu	37	chr7	127669175	127669175	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtggtgtctgtcgcggGtactgccacctgcttgggca	15	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127669175	C	C	127669175	3	2	61	1	0	0	0	0	1	0	0	0	9084	1261	44	4	446	4	LRRC4	7	127669175	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	413812	127669175	31469488	3313	71558											
LEP	3952	broad.mit.edu	37	chr7	127894641	127894641	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccgggatcttcttcacgTgctggccttctctaagagct	9	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127894641	G	G	127894641	3	3	61	1	0	0	0	0	1	0	0	0	8799	1696	59	5	335	5	LEP	7	127894641	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	225466	127894641	31244022	3314	71559											
RBM28	55131	broad.mit.edu	37	chr7	127953116	127953116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctaaaaagctaccgtcCtacacagaagtctttctttt	4	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127953116	A	A	127953116	1	1	61	0	1	0	0	0	0	0	0	0	13236	696	24	2		2	RBM28	7	127953116	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	58475	127953116	31185547	3315	71560											
CCDC136	64753	broad.mit.edu	37	chr7	128455530	128455530	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcaggggattggctcacAgtcccagagcaccgggccac	13	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128455530	T	T	128455530	1	4	61	0	1	0	0	0	0	0	0	0	2796	203	7	5		5	CCDC136	7	128455530	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	502414	128455530	30683133	3316	71561											
FLNC	2318	broad.mit.edu	37	chr7	128477410	128477410	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggagactggggctgctgGgaaaagagggcgccatgtga	21	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128477410	C	C	128477410	1	2	61	0	1	0	0	0	0	0	0	0	5993	1247	43	4		4	FLNC	7	128477410	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21880	128477410	30661253	3317	71562											
FLNC	2318	broad.mit.edu	37	chr7	128481269	128481269	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaagatcgaatgtgacgAcaagggggatggctcctgcg	15	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128481269	G	G	128481269	3	3	61	1	0	0	0	0	1	0	0	0	5993	275	10	5	1905	5	FLNC	7	128481269	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3859	128481269	30657394	3318	71563											
FLNC	2318	broad.mit.edu	37	chr7	128488457	128488457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccccacccccagacatGgaatgtcatcggcttctggg	11	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128488457	T	T	128488457	1	4	61	0	1	0	0	0	0	0	0	0	5993	1363	47	2		2	FLNC	7	128488457	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7188	128488457	30650206	3319	71564											
FLNC	2318	broad.mit.edu	37	chr7	128497047	128497047	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagtctggtgctgctttgctCcagaggtaggggccctgctt	14	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128497047	A	A	128497047	1	1	61	0	1	0	0	0	0	0	0	0	5993	870	30	3		3	FLNC	7	128497047	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8590	128497047	30641616	3320	71565											
TSPAN33	340348	broad.mit.edu	37	chr7	128806761	128806761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaggtgagccagcatcCtgcctcatttcctcctaggc	9	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128806761	A	A	128806761	1	1	61	0	1	0	0	0	0	0	0	0	16773	696	24	2		2	TSPAN33	7	128806761	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	309714	128806761	30331902	3321	71566											
ZC3HC1	51530	broad.mit.edu	37	chr7	129691050	129691050	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgccggacccagggttaactCgtgaactcacgcgtccacgc	11	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129691050	A	A	129691050	1	1	61	0	1	0	0	0	0	0	0	0	17703	899	31	3		3	ZC3HC1	7	129691050	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	884289	129691050	29447613	3322	71567											
KLHDC10	23008	broad.mit.edu	37	chr7	129770407	129770407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacattcatggaggagtgGtgaacatccatgaaaacaaa	10	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129770407	T	T	129770407	3	4	61	1	0	0	0	0	1	0	0	0	8426	1261	44	3	1188	3	KLHDC10	7	129770407	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	79357	129770407	29368256	3323	71568											
TMEM209	84928	broad.mit.edu	37	chr7	129810366	129810366	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaatgaaaaagattcaatCtggtaggtaaatacatatct	6	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129810366	A	A	129810366	1	1	61	0	1	0	0	0	0	0	0	0	16257	928	32	3		3	TMEM209	7	129810366	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	39959	129810366	29328297	3324	71569											
CPA5	93979	broad.mit.edu	37	chr7	129986523	129986523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggaggtggctgccctgCtggtgcctgatcaaggcgga	17	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129986523	A	A	129986523	1	1	61	0	1	0	0	0	0	0	0	0	3825	812	28	3		3	CPA5	7	129986523	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	176157	129986523	29152140	3325	71570											
CPA5	93979	broad.mit.edu	37	chr7	130007797	130007797	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgtataaggtccatgggatCgagtacatttttggcagcat	11	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130007797	A	A	130007797	2	1	61	1	0	0	0	0	0	0	0	1	3825	874	31	3		3	CPA5	7	130007797	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21274	130007797	29130866	3326	71571											
CPA1	1357	broad.mit.edu	37	chr7	130021212	130021212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctgggcaaggggccggGcccctttccagttcctccct	12	17	0	0	rs34470117		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130021212	T	T	130021212	1	4	61	0	1	0	0	0	0	0	0	0	3821	1218	42	3		3	CPA1	7	130021212	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13415	130021212	29117451	3327	71572											
COPG2	26958	broad.mit.edu	37	chr7	130295855	130295855	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttagtaagcgactggCaattcggatcagcatgcagt	10	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130295855	G	G	130295855	3	3	61	1	0	0	0	0	1	0	0	0	3764	710	25	4	520	4	COPG2	7	130295855	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	274643	130295855	28842808	3328	71573											
TSGA13	114960	broad.mit.edu	37	chr7	130356694	130356694	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcatggaactattcacttTattttattttattttatttt	2	4	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130356694	C	C	130356694	1	2	61	0	1	0	0	0	0	0	0	0	16744	1769	61	5		5	TSGA13	7	130356694	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	60839	130356694	28781969	3329	71574											
PLXNA4	91584	broad.mit.edu	37	chr7	131832783	131832783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaaaagcttctcagggCctaggcacagcagctctgcc	12	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131832783	A	A	131832783	1	1	61	0	1	0	0	0	0	0	0	0	12217	754	26	3		3	PLXNA4	7	131832783	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1476089	131832783	27305880	3330	71575											
PLXNA4	91584	broad.mit.edu	37	chr7	131850022	131850022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagcagctggtcagagcCcgtgggctgggaagggcaag	18	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131850022	A	A	131850022	1	1	61	0	1	0	0	0	0	0	0	0	12217	638	22	2		2	PLXNA4	7	131850022	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17239	131850022	27288641	3331	71576											
PLXNA4	91584	broad.mit.edu	37	chr7	131864788	131864788	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcaggatgacggaaaggaGaccaatcactggtgtcaaaa	14	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131864788	T	T	131864788	1	4	61	0	1	0	0	0	0	0	0	0	12217	957	33	3		3	PLXNA4	7	131864788	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14766	131864788	27273875	3332	71577											
PLXNA4	91584	broad.mit.edu	37	chr7	131887591	131887591	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctccacacttgtagagGtgaactgcagaggggaaggg	16	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131887591	T	T	131887591	3	4	61	1	0	0	0	0	1	0	0	0	12217	1252	44	3	3368	3	PLXNA4	7	131887591	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22803	131887591	27251072	3333	71578											
PLXNA4	91584	broad.mit.edu	37	chr7	132192245	132192245	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcccaaccatcccagcgcGcagccctccctgtactcacc	5	22	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132192245	A	A	132192245	1	1	61	0	1	0	0	0	0	0	0	0	12217	1102	38	4		4	PLXNA4	7	132192245	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	304654	132192245	26946418	3334	71579											
PLXNA4	91584	broad.mit.edu	37	chr7	132193253	132193253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtaaatccgattgacgGcccccaagtaaatgtgtcct	9	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132193253	T	T	132193253	3	4	61	1	0	0	0	0	1	0	0	0	12217	1203	42	3	5922	3	PLXNA4	7	132193253	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1008	132193253	26945410	3335	71580											
CHCHD3	54927	broad.mit.edu	37	chr7	132493216	132493216	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttgtgactgaaatggatttCgagtctcttcaccagtcagt	9	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132493216	A	A	132493216	1	1	61	0	1	0	0	0	0	0	0	0	3348	899	31	3		3	CHCHD3	7	132493216	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	299963	132493216	26645447	3336	71581											
SLC35B4	84912	broad.mit.edu	37	chr7	133989530	133989530	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagggtatcatttccataCacaaaatacagaagtgtatt	6	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133989530	T	T	133989530	1	4	61	0	1	0	0	0	0	0	0	0	14692	493	17	4		4	SLC35B4	7	133989530	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1496314	133989530	25149133	3337	71582											
AKR1B1	231	broad.mit.edu	37	chr7	134131868	134131868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaggcccaaggcctgcCcctgcacacggctccactgg	12	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134131868	A	A	134131868	1	1	61	0	1	0	0	0	0	0	0	0	466	638	22	2		2	AKR1B1	7	134131868	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	142338	134131868	25006795	3338	71583											
CNOT4	4850	broad.mit.edu	37	chr7	135047791	135047791	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctctgtgcagcgggatcTgtgtgctgaagggggcgctg	19	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135047791	C	C	135047791	3	2	61	1	0	0	0	0	1	0	0	0	3653	1580	55	5	157	5	CNOT4	7	135047791	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	915923	135047791	24090872	3339	71584											
NUP205	23165	broad.mit.edu	37	chr7	135307617	135307617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattattgaaagttatggcGccgccctcatggaagtggtc	11	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135307617	T	T	135307617	3	4	61	1	0	0	0	0	1	0	0	0	10854	1087	38	3	4545	3	NUP205	7	135307617	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	259826	135307617	23831046	3340	71585											
SLC13A4	26266	broad.mit.edu	37	chr7	135369118	135369118	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgctggctaaccttagcagGacactatgtggaggggtagt	15	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135369118	T	T	135369118	1	4	61	0	1	0	0	0	0	0	0	0	14507	1189	41	3		3	SLC13A4	7	135369118	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	61501	135369118	23769545	3341	71586											
SLC13A4	26266	broad.mit.edu	37	chr7	135380325	135380325	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatgctccctaaaacatAcagctgggctaagtggggag	11	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135380325	T	T	135380325	1	4	61	0	1	0	0	0	0	0	0	0	14507	406	14	5		5	SLC13A4	7	135380325	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11207	135380325	23758338	3342	71587											
SLC13A4	26266	broad.mit.edu	37	chr7	135387756	135387756	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggattccagttttctagtctCcagagaagactaatctctcc	7	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135387756	G	G	135387756	1	3	61	0	1	0	0	0	0	0	0	0	14507	870	30	4		4	SLC13A4	7	135387756	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7431	135387756	23750907	3343	71588											
CHRM2	1129	broad.mit.edu	37	chr7	136662861	136662861	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaactacccattgggtaCtatagggtcactacttgggt	11	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136662861	G	G	136662861	1	3	61	0	1	0	0	0	0	0	0	0	3408	580	20	4		4	CHRM2	7	136662861	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1275105	136662861	22475802	3344	71589											
CHRM2	1129	broad.mit.edu	37	chr7	136700640	136700640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtaccccaactaataccaCcgtggaggtagtggggtctt	11	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136700640	A	A	136700640	3	1	61	1	0	0	0	0	1	0	0	0	3408	507	18	3	1030	3	CHRM2	7	136700640	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37779	136700640	22438023	3345	71590											
DGKI	9162	broad.mit.edu	37	chr7	137170043	137170043	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaagatgtgaactctaaatCaaaataagacattaattgaa	7	4	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137170043	A	A	137170043	1	1	61	0	1	0	0	0	0	0	0	0	4511	841	29	3		3	DGKI	7	137170043	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	469403	137170043	21968620	3346	71591											
DGKI	9162	broad.mit.edu	37	chr7	137198676	137198676	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaagatgaggcagaggtcCaagtaaaccgctagcttgtt	12	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137198676	T	T	137198676	1	4	61	0	1	0	0	0	0	0	0	0	4511	609	21	4		4	DGKI	7	137198676	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28633	137198676	21939987	3347	71592											
DGKI	9162	broad.mit.edu	37	chr7	137266580	137266580	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctccctgggagatggaaatGggacgttgtcctcacctctg	12	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137266580	C	C	137266580	1	2	61	0	1	0	0	0	0	0	0	0	4511	1363	47	4		4	DGKI	7	137266580	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67904	137266580	21872083	3348	71593											
DGKI	9162	broad.mit.edu	37	chr7	137330148	137330148	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggatttggggacaggacTcatctacctcagttgcttgc	11	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137330148	G	G	137330148	1	3	61	0	1	0	0	0	0	0	0	0	4511	1566	54	5		5	DGKI	7	137330148	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	63568	137330148	21808515	3349	71594											
DGKI	9162	broad.mit.edu	37	chr7	137374814	137374814	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagaatctcatacagagcTcaaaatttcccatggggtag	8	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137374814	A	A	137374814	1	1	61	0	1	0	0	0	0	0	0	0	4511	1566	54	5		5	DGKI	7	137374814	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	44666	137374814	21763849	3350	71595											
DGKI	9162	broad.mit.edu	37	chr7	137406805	137406805	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaaggctgatgctggtGgcaaggtgaaaaagggtaac	15	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137406805	A	A	137406805	1	1	61	0	1	0	0	0	0	0	0	0	4511	1363	47	4		4	DGKI	7	137406805	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31991	137406805	21731858	3351	71596											
SVOPL	136306	broad.mit.edu	37	chr7	138287463	138287463	+	Intron	DEL	A	-	-													gcccttgcataggcaccctcAaccccatttccacccctaac					rs35640638		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138287463	-	-	138287463	6	5	61	0	1	1	0	1	0	0	0	0	15542	145	5	0		0	SVOPL	7	138287463	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	880658	138287463	20851200	3352	71597											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138453945	138453945	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctccagtgattcacaccTtctgacttcattcacaaatt	3	13	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138453945	A	A	138453945	3	1	61	1	0	0	0	0	1	0	0	0	1174	1608	56	5	2429	5	ATP6V0A4	7	138453945	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	166482	138453945	20684718	3353	71598											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138456103	138456103	+	Intron	DEL	G	-	-													agttaaattaaaatctaacaGggaaaaaaaatccattagga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138456103	-	-	138456103	6	5	61	0	1	1	0	1	0	0	0	0	1174	1015	35	0		0	ATP6V0A4	7	138456103	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	2158	138456103	20682560	3354	71599											
KIAA1549	57670	broad.mit.edu	37	chr7	138603939	138603939	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccacctctttactcgtcaCtgacacgtaagttgccacaa	7	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138603939	G	G	138603939	3	3	61	1	0	0	0	0	1	0	0	0	8314	565	20	4	5495	4	KIAA1549	7	138603939	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	147836	138603939	20534724	3355	71600											
TTC26	79989	broad.mit.edu	37	chr7	138849886	138849886	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtatctctaggttgttttCcgaggaggtgaaggggcttt	14	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138849886	T	T	138849886	2	4	61	1	0	0	0	0	0	0	0	1	16820	854	30	4		4	TTC26	7	138849886	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	245947	138849886	20288777	3356	71601											
TTC26	79989	broad.mit.edu	37	chr7	138872393	138872393	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacatgattataatgatgTtttagaatgatgaaaaaaag	7	2	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138872393	C	C	138872393	1	2	61	0	1	0	0	0	0	0	0	0	16820	1740	60	5		5	TTC26	7	138872393	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	22507	138872393	20266270	3357	71602											
TBXAS1	6916	broad.mit.edu	37	chr7	139578828	139578828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgtatatttattatctGgttgtcaccctagcaattca	6	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139578828	T	T	139578828	1	4	61	0	1	0	0	0	0	0	0	0	15786	1363	47	2		2	TBXAS1	7	139578828	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	706435	139578828	19559835	3358	71603											
SLC37A3	84255	broad.mit.edu	37	chr7	140051857	140051857	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatagaaggggcggcttctcCtcaccaatttcttctggtga	10	10	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140051857	T	T	140051857	1	4	61	0	1	0	0	0	0	0	0	0	14713	696	24	4		4	SLC37A3	7	140051857	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	473029	140051857	19086806	3359	71604											
DENND2A	27147	broad.mit.edu	37	chr7	140285649	140285649	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgccatccatgcgcccctCctgttggcagcagtctctga	9	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140285649	T	T	140285649	1	4	61	0	1	0	0	0	0	0	0	0	4469	870	30	4		4	DENND2A	7	140285649	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	233792	140285649	18853014	3360	71605											
ADCK2	90956	broad.mit.edu	37	chr7	140379229	140379229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatgtgttggcctcggCgggaggcagtgttggagtga	20	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140379229	A	A	140379229	1	1	61	0	1	0	0	0	0	0	0	0	289	783	27	3		3	ADCK2	7	140379229	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	93580	140379229	18759434	3361	71606											
KIAA1147	57189	broad.mit.edu	37	chr7	141366214	141366214	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgagacatgcagccagcTgggtgtgtgatctgaaaaaa	12	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141366214	A	A	141366214	2	1	61	1	0	0	0	0	0	0	0	1	8280	1567	55	5		5	KIAA1147	7	141366214	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	986985	141366214	17772449	3362	71607											
SSBP1	6742	broad.mit.edu	37	chr7	141442037	141442037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttgaaagatgtaagtaGctaatttccaagtttaaaat	7	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141442037	T	T	141442037	1	4	61	0	1	0	0	0	0	0	0	0	15297	986	34	3		3	SSBP1	7	141442037	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	75823	141442037	17696626	3363	71608											
CLEC5A	23601	broad.mit.edu	37	chr7	141633911	141633911	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgacatttggcatggtcatGaacctgacatatgccatgct	10	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141633911	T	T	141633911	1	4	61	0	1	0	0	0	0	0	0	0	3551	1305	45	3		3	CLEC5A	7	141633911	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	191874	141633911	17504752	3364	71609											
MGAM	8972	broad.mit.edu	37	chr7	141719105	141719105	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtagagggcaaccttgTcaacacaaatgcaggtaagc	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141719105	G	G	141719105	3	3	61	1	0	0	0	0	1	0	0	0	9634	1667	58	5	444	5	MGAM	7	141719105	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	85194	141719105	17419558	3365	71610											
MGAM	8972	broad.mit.edu	37	chr7	141727372	141727372	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaatttttattaaaaacaGagtatttgctaattttcact	3	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141727372	T	T	141727372	1	4	61	0	1	0	0	0	0	0	0	0	9634	957	33	3		3	MGAM	7	141727372	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8267	141727372	17411291	3366	71611											
MGAM	8972	broad.mit.edu	37	chr7	141730529	141730529	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagatatgggtgaatagttCagatggagtgactccactca	12	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141730529	G	G	141730529	4	3	61	1	0	0	0	0	0	1	0	0	9634	838	29	4	1484	4	MGAM	7	141730529	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3157	141730529	17408134	3367	71612											
MGAM	8972	broad.mit.edu	37	chr7	141740853	141740853	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctctgtctgccttggccAcactgcatccatgtttcttt	6	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141740853	C	C	141740853	1	2	61	0	1	0	0	0	0	0	0	0	9634	174	6	5		5	MGAM	7	141740853	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10324	141740853	17397810	3368	71613											
MGAM	8972	broad.mit.edu	37	chr7	141755635	141755635	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatcacattctgcttttAggcaagtgggccaattctca	9	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141755635	G	G	141755635	1	3	61	0	1	0	0	0	0	0	0	0	9634	435	15	5		5	MGAM	7	141755635	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	14782	141755635	17383028	3369	71614											
MGAM	8972	broad.mit.edu	37	chr7	141785666	141785666	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacatcgactacatggagCggcagctggacttcaccctc	10	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141785666	A	A	141785666	1	1	61	0	1	0	0	0	0	0	0	0	9634	783	27	3		3	MGAM	7	141785666	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30031	141785666	17352997	3370	71615											
MGAM	8972	broad.mit.edu	37	chr7	141796001	141796001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctgatgaagctaggcCtaggaaaaaggcaaggatgg	14	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141796001	A	A	141796001	1	1	61	0	1	0	0	0	0	0	0	0	9634	696	24	2		2	MGAM	7	141796001	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10335	141796001	17342662	3371	71616											
TRYX3	136541	broad.mit.edu	37	chr7	141952058	141952058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcagttattttggattaCattttcaatccagggtatat	7	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141952058	A	A	141952058	3	1	61	1	0	0	0	0	1	0	0	0	16729	478	17	3	20	3	TRYX3	7	141952058	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	156057	141952058	17186605	3372	71617											
PRSS1	5644	broad.mit.edu	37	chr7	142460644	142460644	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagctggctggaaaggggtCttttaaggttcagagtaaat	14	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142460644	G	G	142460644	1	3	61	0	1	0	0	0	0	0	0	0	12720	928	32	4		4	PRSS1	7	142460644	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	508586	142460644	16678019	3373	71618											
PRSS1	5644	broad.mit.edu	37	chr7	142460763	142460763	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaatggacagctccaaggAgttgtctcctggggtgatgg	15	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142460763	C	C	142460763	2	2	61	1	0	0	0	0	0	0	0	1	12720	291	11	5		5	PRSS1	7	142460763	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	119	142460763	16677900	3374	71619											
TRPV5	56302	broad.mit.edu	37	chr7	142611969	142611969	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaagaggcccccatagttCtaccagctccattctacctc	5	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142611969	A	A	142611969	1	1	61	0	1	0	0	0	0	0	0	0	16724	928	32	3		3	TRPV5	7	142611969	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	151206	142611969	16526694	3375	71620											
TRPV5	56302	broad.mit.edu	37	chr7	142627252	142627252	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcatagagggctgctatgtGcagcgccgtctcccccaggg	14	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142627252	C	C	142627252	3	2	61	1	0	0	0	0	1	0	0	0	16724	1319	46	4	1991	4	TRPV5	7	142627252	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15283	142627252	16511411	3376	71621											
C7orf34	135927	broad.mit.edu	37	chr7	142637627	142637627	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcaggagggccattgAggcggacattcccaaatatc	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142637627	T	T	142637627	3	4	61	1	0	0	0	0	1	0	0	0	2414	295	11	5	403	5	C7orf34	7	142637627	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10375	142637627	16501036	3377	71622											
KEL	3792	broad.mit.edu	37	chr7	142638226	142638226	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacaagcggaagccaagtgCcagcttttatttttggaaca	10	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142638226	T	T	142638226	1	4	61	0	1	0	0	0	0	0	0	0	8212	754	26	4		4	KEL	7	142638226	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	599	142638226	16500437	3378	71623											
KEL	3792	broad.mit.edu	37	chr7	142655127	142655127	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcccccattgtctggatcgGctcttacacagctgctactg	8	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142655127	C	C	142655127	1	2	61	0	1	0	0	0	0	0	0	0	8212	1218	42	4		4	KEL	7	142655127	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16901	142655127	16483536	3379	71624											
CASP2	835	broad.mit.edu	37	chr7	142991517	142991517	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacatttcctttctgccttAttagtcagaaagttgttact	6	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142991517	G	G	142991517	1	3	61	0	1	0	0	0	0	0	0	0	2697	464	16	5		5	CASP2	7	142991517	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	336390	142991517	16147146	3380	71625											
TAS2R60	338398	broad.mit.edu	37	chr7	143141421	143141421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgtgtgcagcagttcaCcccatcattctgctcttcag	7	13	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143141421	A	A	143141421	3	1	61	1	0	0	0	0	1	0	0	0	15704	506	18	3	878	3	TAS2R60	7	143141421	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	149904	143141421	15997242	3381	71626											
OR2F2	135948	broad.mit.edu	37	chr7	143633045	143633045	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagaaagccttccacacGtgtgcctctcacctcacggt	8	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143633045	T	T	143633045	2	4	61	1	0	0	0	0	0	0	0	1	11091	1132	40	3		3	OR2F2	7	143633045	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	491624	143633045	15505618	3382	71627											
OR2F1	26211	broad.mit.edu	37	chr7	143657384	143657385	+	Missense_Mutation	DNP	GG	TT	TT													ttatttttctccctggccttGggtgggattgagtttgttct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	143657385	TT	TT	143657384	3	4	61	1	0	0	0	0	1	0	0	0	11090	1339	47	2	323	2	OR2F1	7	143657384	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	24339	143657384	15481279	3383	71628											
NOBOX	135935	broad.mit.edu	37	chr7	144098930	144098930	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caattctgagacggcgttagCtcatggtatctcctaatttg	9	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144098930	T	T	144098930	1	4	61	0	1	0	0	0	0	0	0	0	10607	812	28	4		4	NOBOX	7	144098930	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	441546	144098930	15039733	3384	71629											
TPK1	27010	broad.mit.edu	37	chr7	144288742	144288742	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacagaatattggtgtttaAgttttaaaataatacattaa	5	2	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144288742	C	C	144288742	1	2	61	0	1	0	0	0	0	0	0	0	16528	87	3	5		5	TPK1	7	144288742	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	189812	144288742	14849921	3385	71630											
CNTNAP2	26047	broad.mit.edu	37	chr7	145944603	145944603	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggactgaggggacaggtggGagggaaagaaggaagatttg	21	2	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145944603	T	T	145944603	1	4	61	0	1	0	0	0	0	0	0	0	3679	1189	41	3		3	CNTNAP2	7	145944603	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1655861	145944603	13194060	3386	71631											
CNTNAP2	26047	broad.mit.edu	37	chr7	146288187	146288187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgctttctgatggtgCaatgtatacaagctttgttt	9	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146288187	A	A	146288187	1	1	61	0	1	0	0	0	0	0	0	0	3679	725	25	3		3	CNTNAP2	7	146288187	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	343584	146288187	12850476	3387	71632											
CNTNAP2	26047	broad.mit.edu	37	chr7	146805468	146805468	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctgactgtcagttctattCtttccgttatggatgttccc	7	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146805468	A	A	146805468	1	1	61	0	1	0	0	0	0	0	0	0	3679	928	32	3		3	CNTNAP2	7	146805468	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	517281	146805468	12333195	3388	71633											
CNTNAP2	26047	broad.mit.edu	37	chr7	146864426	146864426	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatggtgctattataacactGactgtttctgccgaaagaag	10	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146864426	T	T	146864426	1	4	61	0	1	0	0	0	0	0	0	0	3679	1305	45	3		3	CNTNAP2	7	146864426	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	58958	146864426	12274237	3389	71634											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259199	147259199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagccatttgttctgtgctGtgcttatgtaggatattttg	12	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147259199	A	A	147259199	1	1	61	0	1	0	0	0	0	0	0	0	3679	1392	48	4		4	CNTNAP2	7	147259199	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	394773	147259199	11879464	3390	71635											
CNTNAP2	26047	broad.mit.edu	37	chr7	147336298	147336298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacacagctcgtttacagCgcctccatggaccagataag	10	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147336298	A	A	147336298	3	1	61	1	0	0	0	0	1	0	0	0	3679	767	27	3	2048	3	CNTNAP2	7	147336298	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	77099	147336298	11802365	3391	71636											
CNTNAP2	26047	broad.mit.edu	37	chr7	147384392	147384392	+	Intron	DEL	C	-	-													gtatacaaatgggtgcattgCcttgtatacaagtaaggata							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147384392	-	-	147384392	6	5	61	0	1	1	0	1	0	0	0	0	3679	754	26	0		0	CNTNAP2	7	147384392	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	48094	147384392	11754271	3392	71637											
CNTNAP2	26047	broad.mit.edu	37	chr7	147482453	147482453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaagggggagctgagtgTtgctgagaggcccaataaga	18	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147482453	C	C	147482453	1	2	61	0	1	0	0	0	0	0	0	0	3679	1740	60	5		5	CNTNAP2	7	147482453	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	98061	147482453	11656210	3393	71638											
CNTNAP2	26047	broad.mit.edu	37	chr7	147600746	147600746	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggaatccagaaatgtgccTgcggcatcgaacgcaactgc	11	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147600746	C	C	147600746	3	2	61	1	0	0	0	0	1	0	0	0	3679	1580	55	5	2242	5	CNTNAP2	7	147600746	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	118293	147600746	11537917	3394	71639											
CNTNAP2	26047	broad.mit.edu	37	chr7	147930398	147930398	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctttctctcttcccaaCcacattgcacaagggatcta	4	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147930398	A	A	147930398	1	1	61	0	1	0	0	0	0	0	0	0	3679	522	18	3		3	CNTNAP2	7	147930398	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	329652	147930398	11208265	3395	71640											
CNTNAP2	26047	broad.mit.edu	37	chr7	147942361	147942361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactatgtgtcctctagacaCagtaacttaatctctgtgcc	6	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147942361	A	A	147942361	1	1	61	0	1	0	0	0	0	0	0	0	3679	493	17	3		3	CNTNAP2	7	147942361	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11963	147942361	11196302	3396	71641											
SSPO	23145	broad.mit.edu	37	chr7	149529851	149529851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttcacccgctccctctcGcccaggagccatacctgcag	8	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149529851	T	T	149529851	1	4	61	0	1	0	0	0	0	0	0	0	15307	1102	38	3		3	SSPO	7	149529851	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1587490	149529851	9608812	3397	71642											
GIMAP2	26157	broad.mit.edu	37	chr7	150389579	150389579	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaagtcagggaagctggGgaaatagagagattgtcatt	14	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150389579	T	T	150389579	4	4	61	1	0	0	0	0	0	1	0	0	6444	1233	43	2	211	2	GIMAP2	7	150389579	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	859728	150389579	8749084	3398	71643											
GIMAP2	26157	broad.mit.edu	37	chr7	150389661	150389661	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctctgtacaaagaggtgcAgaggtgctacttgctgtctg	13	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150389661	G	G	150389661	3	3	61	1	0	0	0	0	1	0	0	0	6444	188	7	5	293	5	GIMAP2	7	150389661	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	82	150389661	8749002	3399	71644											
GIMAP1	170575	broad.mit.edu	37	chr7	150417295	150417295	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaccagggcctgcaccaCgggcagccgcaggtgggaca	16	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150417295	T	T	150417295	3	4	61	1	0	0	0	0	1	0	0	0	6443	536	19	4	209	4	GIMAP1	7	150417295	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	27634	150417295	8721368	3400	71645											
ATG9B	285973	broad.mit.edu	37	chr7	150720433	150720433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgggctgctcgggaaagCatgggatggaagcagctggc	17	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150720433	A	A	150720433	1	1	61	0	1	0	0	0	0	0	0	0	1107	725	25	3		3	ATG9B	7	150720433	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	303138	150720433	8418230	3401	71646											
ABCB8	11194	broad.mit.edu	37	chr7	150737525	150737525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagccatggccactccctGgagatgctgttgtcacccct	10	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150737525	T	T	150737525	1	4	61	0	1	0	0	0	0	0	0	0	47	1363	47	2		2	ABCB8	7	150737525	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17092	150737525	8401138	3402	71647											
ABCB8	11194	broad.mit.edu	37	chr7	150741097	150741097	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgggggccagaagcagcGcctggccatcgcccgagccc	15	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150741097	A	A	150741097	3	1	61	1	0	0	0	0	1	0	0	0	47	1087	38	4	1863	4	ABCB8	7	150741097	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3572	150741097	8397566	3403	71648											
ASB10	136371	broad.mit.edu	37	chr7	150883752	150883752	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagagaccagagtcctaggGaggggagacgtgggcctcag	17	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150883752	C	C	150883752	1	2	61	0	1	0	0	0	0	0	0	0	1018	1189	41	4		4	ASB10	7	150883752	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	142655	150883752	8254911	3404	71649											
ABCF2	10061	broad.mit.edu	37	chr7	150912582	150912582	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtcaaatggaggagactCtggtttggacagcttccaaa	13	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912582	A	A	150912582	1	1	61	0	1	0	0	0	0	0	0	0	66	928	32	3		3	ABCF2	7	150912582	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28830	150912582	8226081	3405	71650											
ABCF2	10061	broad.mit.edu	37	chr7	150920972	150920972	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatgaggctcctgggggcCtttctgggaggacgcccacc	15	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150920972	G	G	150920972	1	3	61	0	1	0	0	0	0	0	0	0	66	696	24	4		4	ABCF2	7	150920972	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8390	150920972	8217691	3406	71651											
ABCF2	10061	broad.mit.edu	37	chr7	150921000	150921000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggacgcccacccctatgcCcaggtctggagccctaccat	10	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150921000	A	A	150921000	1	1	61	0	1	0	0	0	0	0	0	0	66	638	22	2		2	ABCF2	7	150921000	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28	150921000	8217663	3407	71652											
GALNTL5	168391	broad.mit.edu	37	chr7	151700101	151700101	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catacgtgtattgagacccaGggggaaaaagcctccagaga	12	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151700101	A	A	151700101	1	1	61	0	1	0	0	0	0	0	0	0	6286	1015	35	4		4	GALNTL5	7	151700101	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	779101	151700101	7438562	3408	71653											
MLL3	58508	broad.mit.edu	37	chr7	151845739	151845739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcaagtggacccacagatCcaagtcaaggttgagtagcc	11	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151845739	A	A	151845739	3	1	61	1	0	0	0	0	1	0	0	0	9715	855	30	3	1494	3	MLL3	7	151845739	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	145638	151845739	7292924	3409	71654											
DPP6	1804	broad.mit.edu	37	chr7	153639633	153639633	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcagtaatggggaggagAgagggcaggaagggaggcag	22	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153639633	G	G	153639633	1	3	61	0	1	0	0	0	0	0	0	0	4770	319	11	5		5	DPP6	7	153639633	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1793894	153639633	5499030	3410	71655											
DPP6	1804	broad.mit.edu	37	chr7	153653489	153653489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagacagcgaaactcagGgctggggataggagatggac	16	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153653489	T	T	153653489	1	4	61	0	1	0	0	0	0	0	0	0	4770	1247	43	2		2	DPP6	7	153653489	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13856	153653489	5485174	3411	71656											
DPP6	1804	broad.mit.edu	37	chr7	153654667	153654667	+	Intron	DEL	G	-	-													tgagggcgagaaggaggcctGggcaagagaaaggacttgct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153654667	-	-	153654667	6	5	61	0	1	1	0	1	0	0	0	0	4770	1363	47	0		0	DPP6	7	153654667	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	1178	153654667	5483996	3412	71657											
DPP6	1804	broad.mit.edu	37	chr7	154384372	154384372	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatggaagcagtggcccaGcagacgcaggacaaggtcct	15	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154384372	A	A	154384372	1	1	61	0	1	0	0	0	0	0	0	0	4770	986	34	4		4	DPP6	7	154384372	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	729705	154384372	4754291	3413	71658											
DPP6	1804	broad.mit.edu	37	chr7	154595515	154595515	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacagttggaggatgaagAgccatgctggggccgggaca	16	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154595515	C	C	154595515	1	2	61	0	1	0	0	0	0	0	0	0	4770	319	11	5		5	DPP6	7	154595515	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	211143	154595515	4543148	3414	71659											
DPP6	1804	broad.mit.edu	37	chr7	154684299	154684299	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggcggggcggggccggGtgttccatagcatgtgtgtc	21	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154684299	T	T	154684299	1	4	61	0	1	0	0	0	0	0	0	0	4770	1276	44	3		3	DPP6	7	154684299	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	88784	154684299	4454364	3415	71660											
LMBR1	64327	broad.mit.edu	37	chr7	156553265	156553266	+	Intron	INS	-	AAC	AAC													gaagaccaaacaaacaaacaINSaacaacaacaaatgtaggaa					rs150542312	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAC	156553266	AAC	AAC	156553265	6	5	61	0	1	1	1	0	0	0	0	0	8914	145	5	0		0	LMBR1	7	156553265	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1868966	156553265	2585398	3416	71661											
UBE3C	9690	broad.mit.edu	37	chr7	156976595	156976595	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctctctgaggaagggctgCtggtgtatttgcgggtgctg	16	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156976595	G	G	156976595	3	3	61	1	0	0	0	0	1	0	0	0	17007	796	28	4	1049	4	UBE3C	7	156976595	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	423330	156976595	2162068	3417	71662											
UBE3C	9690	broad.mit.edu	37	chr7	157023956	157023956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtaccccaacccggctGctcagatgcttgtgggagat	11	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157023956	T	T	157023956	3	4	61	1	0	0	0	0	1	0	0	0	17007	1319	46	3	2486	3	UBE3C	7	157023956	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47361	157023956	2114707	3418	71663											
PTPRN2	5799	broad.mit.edu	37	chr7	157341636	157341636	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccggaggagagactgacaGtaccttcgtctggaccatgc	12	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157341636	A	A	157341636	1	1	61	0	1	0	0	0	0	0	0	0	12916	1044	36	4		4	PTPRN2	7	157341636	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	317680	157341636	1797027	3419	71664											
PTPRN2	5799	broad.mit.edu	37	chr7	157848557	157848558	+	Intron	INS	-	TG	TG													agttgtccccagggcccagcINStcttttatctttttgtcttg					rs34708688		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	157848558	TG	TG	157848557	6	5	61	0	1	1	1	0	0	0	0	0	12916	812	28	0		0	PTPRN2	7	157848557	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	506921	157848557	1290106	3420	71665											
PTPRN2	5799	broad.mit.edu	37	chr7	157874037	157874037	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacgttttggacattggcgCtcactttgaaggtcactgct	10	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157874037	G	G	157874037	3	3	61	1	0	0	0	0	1	0	0	0	12916	797	28	4	1423	4	PTPRN2	7	157874037	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	25480	157874037	1264626	3421	71666											
PTPRN2	5799	broad.mit.edu	37	chr7	158039939	158039939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggctctgagacgccccCtggccaagaggggtggagga	18	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158039939	A	A	158039939	1	1	61	0	1	0	0	0	0	0	0	0	12916	696	24	2		2	PTPRN2	7	158039939	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	165902	158039939	1098724	3422	71667											
NCAPG2	54892	broad.mit.edu	37	chr7	158441557	158441557	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcaaatggactacaaccaCggcaaatggactataaccac	8	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158441557	T	T	158441557	1	4	61	0	1	0	0	0	0	0	0	0	10303	551	19	4		4	NCAPG2	7	158441557	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	401618	158441557	697106	3423	71668											
NCAPG2	54892	broad.mit.edu	37	chr7	158444822	158444822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatgggggactcccacaCggactccatctctctcagtg	9	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158444822	A	A	158444822	1	1	61	0	1	0	0	0	0	0	0	0	10303	551	19	3		3	NCAPG2	7	158444822	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3265	158444822	693841	3424	71669											
NCAPG2	54892	broad.mit.edu	37	chr7	158449451	158449451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaacggagactccccaaCtttgtcaaaaggtgaggaaa	9	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158449451	A	A	158449451	1	1	61	0	1	0	0	0	0	0	0	0	10303	580	20	3		3	NCAPG2	7	158449451	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4629	158449451	689212	3425	71670											
ESYT2	57488	broad.mit.edu	37	chr7	158528138	158528138	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctaaacactgcactgcaggTaaatgttcaattttacaaac	5	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158528138	A	A	158528138	1	1	61	0	1	0	0	0	0	0	0	0	5307	1653	57	5		5	ESYT2	7	158528138	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	78687	158528138	610525	3426	71671											
ESYT2	57488	broad.mit.edu	37	chr7	158557340	158557340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggctcagcccaccacccCagcaacacagcagacacgac	8	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158557340	A	A	158557340	1	1	61	0	1	0	0	0	0	0	0	0	5307	609	21	2		2	ESYT2	7	158557340	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	29202	158557340	581323	3427	71672											
ESYT2	57488	broad.mit.edu	37	chr7	158580985	158580985	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttatttttgaatacagctTagagaactttagaaaactgt	6	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158580985	A	A	158580985	1	1	61	0	1	0	0	0	0	0	0	0	5307	1769	61	5		5	ESYT2	7	158580985	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23645	158580985	557678	3428	71673											
VIPR2	7434	broad.mit.edu	37	chr7	158829634	158829634	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggaaagcatgacctcatCcggtaacagcagctaccagc	10	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158829634	A	A	158829634	1	1	61	0	1	0	0	0	0	0	0	0	17297	870	30	3		3	VIPR2	7	158829634	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	248649	158829634	309029	3429	71674											
VIPR2	7434	broad.mit.edu	37	chr7	158935105	158935105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccgggtgagaatgtcaCgggagttcttactcaccaag	11	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158935105	A	A	158935105	1	1	61	0	1	0	0	0	0	0	0	0	17297	551	19	3		3	VIPR2	7	158935105	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	105471	158935105	203558	3430	71675											
C8orf42	157695	broad.mit.edu	37	chr8	442737	442737	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caactcttcttttaatcgtaAgttagttctataggagatga	7	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	442737	C	C	442737	3	2	61	1	0	0	0	0	1	0	0	0	2454	69	3	5	341	5	C8orf42	8	442737	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08		442737	145921285	3431	71676											
CSMD1	64478	broad.mit.edu	37	chr8	2855626	2855626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagcccgtgttgcaggtgaAattcacgacatcattcaggt	10	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2855626	T	T	2855626	3	4	61	1	0	0	0	0	1	0	0	0	3978	14	1	5	2478	5	CSMD1	8	2855626	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2412889	2855626	143508396	3432	71677											
CSMD1	64478	broad.mit.edu	37	chr8	2876216	2876216	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacatcaattcagttatgcaGattactcctgtgctccaaac	5	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2876216	T	T	2876216	1	4	61	0	1	0	0	0	0	0	0	0	3978	957	33	3		3	CSMD1	8	2876216	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20590	2876216	143487806	3433	71678											
CSMD1	64478	broad.mit.edu	37	chr8	3045484	3045485	+	Missense_Mutation	DNP	GG	TT	TT													cgtggcaaaactgatcacttGgatctaccaaaccatgacat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	3045485	TT	TT	3045484	3	4	61	1	0	0	0	0	1	0	0	0	3978	1357	47	2	5307	2	CSMD1	8	3045484	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	169268	3045484	143318538	3434	71679											
CSMD1	64478	broad.mit.edu	37	chr8	3046426	3046426	+	Nonsense_Mutation	SNP	C	A	A													cacctgaattcccgagccctCcgtaactatgatcttccata							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3046426	A	A	3046426	4	1	61	1	0	0	0	0	0	1	0	0	3978	864	30	3	5332	3	CSMD1	8	3046426	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	942	3046426	143317596	3435	71680	327	2									
CSMD1	64478	broad.mit.edu	37	chr8	3046430	3046430	+	Silent	SNP	A	T	T													tgaattcccgagccctccgtAactatgatcttccatataca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3046430	T	T	3046430	2	4	61	1	0	0	0	0	0	0	0	1	3978	349	13	5		5	CSMD1	8	3046430	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4	3046430	143317592	3436	71681	327	2									
CSMD1	64478	broad.mit.edu	37	chr8	3165098	3165098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttagctacagctttacCttttcttctttagttcagaa	4	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3165098	A	A	3165098	1	1	61	0	1	0	0	0	0	0	0	0	3978	696	24	2		2	CSMD1	8	3165098	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	118668	3165098	143198924	3437	71682											
CSMD1	64478	broad.mit.edu	37	chr8	4757713	4757713	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcaagtcccaaagtgacaGgggtatgaagacacgggttg	13	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4757713	A	A	4757713	1	1	61	0	1	0	0	0	0	0	0	0	3978	1015	35	4		4	CSMD1	8	4757713	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1592615	4757713	141606309	3438	71683											
MCPH1	79648	broad.mit.edu	37	chr8	6302908	6302908	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaagaaatgaaagaagcGgttggtctgaaaagcacaca	11	6	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6302908	T	T	6302908	2	4	61	1	0	0	0	0	0	0	0	1	9491	1103	39	1		1	MCPH1	8	6302908	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1545195	6302908	140061114	3439	71684											
PRSS55	203074	broad.mit.edu	37	chr8	10396302	10396302	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttcagagctattttgtactGataataaaatagaggctatt	8	4	1	3	rs112308687		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10396302	C	C	10396302	4	2	61	1	0	0	0	0	0	0	0	0	12740	1285	45	4	1076	4	PRSS55	8	10396302	Nonstop_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4093394	10396302	135967720	3440	71685											
RP1L1	94137	broad.mit.edu	37	chr8	10479344	10479344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatcatagtggcttccaGcagaggtagtagcttcctgc	10	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10479344	T	T	10479344	1	4	61	0	1	0	0	0	0	0	0	0	13644	986	34	3		3	RP1L1	8	10479344	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	83042	10479344	135884678	3441	71686											
C8orf74	203076	broad.mit.edu	37	chr8	10557834	10557834	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatccagaacacattcgcCatcttggacctgaagcttca	7	13	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10557834	A	A	10557834	2	1	61	1	0	0	0	0	0	0	0	1	2462	581	21	2		2	C8orf74	8	10557834	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	78490	10557834	135806188	3442	71687											
XKR6	286046	broad.mit.edu	37	chr8	10756712	10756712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggctgagaggtggggcCacgtctgccatgggcagccc	19	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10756712	A	A	10756712	1	1	61	0	1	0	0	0	0	0	0	0	17562	609	21	2		2	XKR6	8	10756712	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	198878	10756712	135607310	3443	71688											
AMAC1L2	83650	broad.mit.edu	37	chr8	11188962	11188962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcaacgtcctcagcattgGatgtgcctacagtgcagttc	10	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11188962	T	T	11188962	3	4	61	1	0	0	0	0	1	0	0	0	560	1174	41	3	349	3	AMAC1L2	8	11188962	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	432250	11188962	135175060	3444	71689											
AMAC1L2	83650	broad.mit.edu	37	chr8	11188988	11188988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacagtgcagttcaggtgGtgcccgctggcaacgctgcc	13	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11188988	T	T	11188988	3	4	61	1	0	0	0	0	1	0	0	0	560	1261	44	3	375	3	AMAC1L2	8	11188988	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26	11188988	135175034	3445	71690											
GATA4	2626	broad.mit.edu	37	chr8	11607661	11607661	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctcctgtgccaactgccaGaccaccaccaccacgctgtg	7	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11607661	T	T	11607661	3	4	61	1	0	0	0	0	1	0	0	0	6318	933	33	3	835	3	GATA4	8	11607661	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	418673	11607661	134756361	3446	71691											
DLC1	10395	broad.mit.edu	37	chr8	13357088	13357088	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtttcaccagctattcCccaggagttagaagaaactt	7	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13357088	T	T	13357088	3	4	61	1	0	0	0	0	1	0	0	0	4590	632	22	4	4246	4	DLC1	8	13357088	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1749427	13357088	133006934	3447	71692											
SGCZ	137868	broad.mit.edu	37	chr8	14721324	14721324	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcatgtgaagactgggttGtaaatgctggaaatacacta	10	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14721324	A	A	14721324	1	1	61	0	1	0	0	0	0	0	0	0	14317	1392	48	4		4	SGCZ	8	14721324	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1364236	14721324	131642698	3448	71693											
MSR1	4481	broad.mit.edu	37	chr8	15998348	15998348	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaaacagcaccagggaccAggagagaaggccatgtggaa	13	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15998348	G	G	15998348	1	3	61	0	1	0	0	0	0	0	0	0	9980	203	7	5		5	MSR1	8	15998348	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1277024	15998348	130365674	3449	71694											
MTMR7	9108	broad.mit.edu	37	chr8	17199118	17199118	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcactgatagtccacctcGgcttatgaaaacgtgataca	8	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17199118	C	C	17199118	1	2	61	0	1	0	0	0	0	0	0	0	10042	1131	39	4		4	MTMR7	8	17199118	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1200770	17199118	129164904	3450	71695											
PCM1	5108	broad.mit.edu	37	chr8	17871617	17871617	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagctaaaaaaaaaaaaAaaacacacacagaaaacact	2	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17871617	C	C	17871617	1	2	61	0	1	0	0	0	0	0	0	0	11678	29	1	5		5	PCM1	8	17871617	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	672499	17871617	128492405	3451	71696											
PSD3	23362	broad.mit.edu	37	chr8	18583460	18583460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcttcatgtcccgcccaCttccacacccactgagagtg	7	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18583460	A	A	18583460	1	1	61	0	1	0	0	0	0	0	0	0	12754	580	20	3		3	PSD3	8	18583460	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	711843	18583460	127780562	3452	71697											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19315715	19315715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgaaaacccagtccttcCtgcttttcacttctgaaggt	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19315715	A	A	19315715	1	1	61	0	1	0	0	0	0	0	0	0	3972	696	24	2		2	CSGALNACT1	8	19315715	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	732255	19315715	127048307	3453	71698											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19328723	19328723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcctccaatgggcatgCgtatcactcactaaacgcac	8	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19328723	A	A	19328723	1	1	61	0	1	0	0	0	0	0	0	0	3972	783	27	3		3	CSGALNACT1	8	19328723	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13008	19328723	127035299	3454	71699											
LPL	4023	broad.mit.edu	37	chr8	19809404	19809404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcattacccagtgtccgCgggctacaccaaactggtgg	13	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19809404	A	A	19809404	3	1	61	1	0	0	0	0	1	0	0	0	9008	768	27	3	384	3	LPL	8	19809404	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	480681	19809404	126554618	3455	71700											
SLC18A1	6570	broad.mit.edu	37	chr8	20028889	20028889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgacctgggctgtcacCtgctggaggctctgatggtg	14	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20028889	A	A	20028889	1	1	61	0	1	0	0	0	0	0	0	0	14538	696	24	2		2	SLC18A1	8	20028889	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	219485	20028889	126335133	3456	71701											
HR	55806	broad.mit.edu	37	chr8	21977319	21977319	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggacgcagggcaaggccCggtgggaggtaggaagccag	20	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21977319	T	T	21977319	2	4	61	1	0	0	0	0	0	0	0	1	7414	639	23	4		4	HR	8	21977319	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1948430	21977319	124386703	3457	71702											
PPP3CC	5533	broad.mit.edu	37	chr8	22355572	22355572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaacattgtttctgcttcGgggaaatcatgaatgcaggc	10	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22355572	T	T	22355572	3	4	61	1	0	0	0	0	1	0	0	0	12500	1116	39	1	445	1	PPP3CC	8	22355572	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	378253	22355572	124008450	3458	71703											
SORBS3	10174	broad.mit.edu	37	chr8	22429847	22429847	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttgccatgatacgcttcTcgcaggtaccgggcgatgta	13	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22429847	G	G	22429847	1	3	61	0	1	0	0	0	0	0	0	0	15043	1566	54	5		5	SORBS3	8	22429847	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	74275	22429847	123934175	3459	71704											
PEBP4	157310	broad.mit.edu	37	chr8	22578409	22578409	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttacagcacccaaaacaGcgccaagtatacactaggca	6	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22578409	A	A	22578409	1	1	61	0	1	0	0	0	0	0	0	0	11808	986	34	4		4	PEBP4	8	22578409	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	148562	22578409	123785613	3460	71705											
PEBP4	157310	broad.mit.edu	37	chr8	22767193	22767193	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcagtactgtggagtggTtaggggcaggagctttggag	19	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22767193	G	G	22767193	1	3	61	0	1	0	0	0	0	0	0	0	11808	1740	60	5		5	PEBP4	8	22767193	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	188784	22767193	123596829	3461	71706											
PEBP4	157310	broad.mit.edu	37	chr8	22770927	22770927	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcaatgtccgtgacatcatCattccccacgctctgcccca	6	17	3	1	rs145097197	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22770927	G	G	22770927	1	3	61	0	1	0	0	0	0	0	0	0	11808	841	29	4		4	PEBP4	8	22770927	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3734	22770927	123593095	3462	71707											
NEFL	4747	broad.mit.edu	37	chr8	24810479	24810479	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcagctttaacataaaaAgaaaatgtacaaaatgcaaa	6	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24810479	C	C	24810479	1	2	61	0	1	0	0	0	0	0	0	0	10410	87	3	5		5	NEFL	8	24810479	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2039552	24810479	121553543	3463	71708											
PPP2R2A	5520	broad.mit.edu	37	chr8	25441265	25441265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgactttgctacccaagtaGgatatcttggcttgaactat	8	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25441265	T	T	25441265	1	4	61	0	1	0	0	0	0	0	0	0	12485	1015	35	2		2	PPP2R2A	8	25441265	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	630786	25441265	120922757	3464	71709											
PNMA2	10687	broad.mit.edu	37	chr8	26366261	26366261	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccagtcctctaacagtGccagcgccattgtcctaaga	8	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26366261	A	A	26366261	3	1	61	1	0	0	0	0	1	0	0	0	12249	1319	46	4	1087	4	PNMA2	8	26366261	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	924996	26366261	119997761	3465	71710											
PTK2B	2185	broad.mit.edu	37	chr8	27260458	27260458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaccttatgtcactcctaGgttgtgagagcaagactggg	11	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27260458	T	T	27260458	1	4	61	0	1	0	0	0	0	0	0	0	12869	1015	35	2		2	PTK2B	8	27260458	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	894197	27260458	119103564	3466	71711											
EPHX2	2053	broad.mit.edu	37	chr8	27373193	27373193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggcctgggtccactgggCctggtgcttggtcgctgccc	17	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27373193	T	T	27373193	1	4	61	0	1	0	0	0	0	0	0	0	5222	754	26	4		4	EPHX2	8	27373193	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	112735	27373193	118990829	3467	71712											
KIF13B	23303	broad.mit.edu	37	chr8	28981541	28981541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctatttgtttttcctacCacgtttactgacaagctttt	4	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28981541	A	A	28981541	3	1	61	1	0	0	0	0	1	0	0	0	8345	608	21	2	2184	2	KIF13B	8	28981541	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1608348	28981541	117382481	3468	71713											
UNC5D	137970	broad.mit.edu	37	chr8	35541222	35541222	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtggctaagaggagaagccTgtcggccactgttgtggtct	15	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35541222	C	C	35541222	3	2	61	1	0	0	0	0	1	0	0	0	17121	1580	55	5	746	5	UNC5D	8	35541222	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6559681	35541222	110822800	3469	71714											
KCNU1	157855	broad.mit.edu	37	chr8	36645026	36645026	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatcaattgattccctAggtaaacaactgacgttcct	5	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36645026	T	T	36645026	1	4	61	0	1	0	0	0	0	0	0	0	8163	435	15	5		5	KCNU1	8	36645026	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1103804	36645026	109718996	3470	71715											
BRF2	55290	broad.mit.edu	37	chr8	37704706	37704707	+	Intron	INS	-	A	A													cggagacctaggaaaaacccINSacggcaagagttagaggggt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37704707	A	A	37704706	6	5	61	0	1	1	1	0	0	0	0	0	1520	609	21	0		0	BRF2	8	37704706	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1059680	37704706	108659316	3471	71716											
WHSC1L1	54904	broad.mit.edu	37	chr8	38184143	38184143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttttaaatataatttaCttttgataactaagagtttc	4	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38184143	A	A	38184143	1	1	61	0	1	0	0	0	0	0	0	0	17490	580	20	3		3	WHSC1L1	8	38184143	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	479437	38184143	108179879	3472	71717											
WHSC1L1	54904	broad.mit.edu	37	chr8	38204962	38204962	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaaaagatctcttgaacTtccagtaaatgtgaaatata	5	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38204962	C	C	38204962	1	2	61	0	1	0	0	0	0	0	0	0	17490	1624	56	5		5	WHSC1L1	8	38204962	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	20819	38204962	108159060	3473	71718											
TACC1	6867	broad.mit.edu	37	chr8	38681544	38681544	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttctctgttttctgttGtaagtactcctgctgtttct	6	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38681544	T	T	38681544	1	4	61	0	1	0	0	0	0	0	0	0	15620	1392	48	3		3	TACC1	8	38681544	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	476582	38681544	107682478	3474	71719											
TM2D2	83877	broad.mit.edu	37	chr8	38848892	38848892	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccatcacttggcatcaGccctccagtaattagcaaaa	7	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38848892	A	A	38848892	2	1	61	1	0	0	0	0	0	0	0	1	16087	962	34	4		4	TM2D2	8	38848892	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	167348	38848892	107515130	3475	71720											
ADAM32	203102	broad.mit.edu	37	chr8	39016089	39016089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttgtatcccaggaaagcTgtgaggtggaccagtttaga	13	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39016089	A	A	39016089	1	1	61	0	1	0	0	0	0	0	0	0	249	1595	55	5		5	ADAM32	8	39016089	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	167197	39016089	107347933	3476	71721											
ADAM18	8749	broad.mit.edu	37	chr8	39508586	39508586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaaaacatgtgaacaaaTgtctctgcatcataaacaag	7	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39508586	C	C	39508586	1	2	61	0	1	0	0	0	0	0	0	0	239	1479	51	5		5	ADAM18	8	39508586	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	492497	39508586	106855436	3477	71722											
ADAM2	2515	broad.mit.edu	37	chr8	39602147	39602147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacatcacacaccagaacCtgtcgggggttgggaggcaa	14	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39602147	A	A	39602147	1	1	61	0	1	0	0	0	0	0	0	0	241	696	24	2		2	ADAM2	8	39602147	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	93561	39602147	106761875	3478	71723											
ZMAT4	79698	broad.mit.edu	37	chr8	40532236	40532236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttacctctcagttccccCatatccagggttgtccccag	6	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40532236	A	A	40532236	3	1	61	1	0	0	0	0	1	0	0	0	17820	594	21	2	137	2	ZMAT4	8	40532236	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	930089	40532236	105831786	3479	71724											
ZMAT4	79698	broad.mit.edu	37	chr8	40695510	40695510	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccatcttgtgaggggcaAacggagcagatggccctgac	14	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40695510	C	C	40695510	1	2	61	0	1	0	0	0	0	0	0	0	17820	29	1	5		5	ZMAT4	8	40695510	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	163274	40695510	105668512	3480	71725											
ZMAT4	79698	broad.mit.edu	37	chr8	40723463	40723463	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagagctacgatgcaagcgActggattcgacaaagcctcg	12	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40723463	T	T	40723463	1	4	61	0	1	0	0	0	0	0	0	0	17820	290	10	5		5	ZMAT4	8	40723463	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	27953	40723463	105640559	3481	71726											
SFRP1	6422	broad.mit.edu	37	chr8	41164414	41164414	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggtgagggattctttccTctcttcttcaggcaacccgt	11	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41164414	A	A	41164414	1	1	61	0	1	0	0	0	0	0	0	0	14274	1566	54	5		5	SFRP1	8	41164414	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	440951	41164414	105199608	3482	71727											
ANK1	286	broad.mit.edu	37	chr8	41513328	41513328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaaagtgcaacgtccagCaaaaaccccacacacagagt	7	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41513328	A	A	41513328	1	1	61	0	1	0	0	0	0	0	0	0	620	725	25	3		3	ANK1	8	41513328	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	348914	41513328	104850694	3483	71728											
ANK1	286	broad.mit.edu	37	chr8	41519214	41519214	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaagagagactggagagaGagctcataaagaggtgagtg	17	3	1	7			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41519214	T	T	41519214	1	4	61	0	1	0	0	0	0	0	0	0	620	957	33	3		3	ANK1	8	41519214	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5886	41519214	104844808	3484	71729											
ANK1	286	broad.mit.edu	37	chr8	41591283	41591283	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttagatacgtaacctagTgatgaggataaaggcccact	9	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41591283	A	A	41591283	1	1	61	0	1	0	0	0	0	0	0	0	620	1711	59	5		5	ANK1	8	41591283	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	72069	41591283	104772739	3485	71730											
ANK1	286	broad.mit.edu	37	chr8	41665477	41665477	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggaagaggaggaggggaaGaggaggaggggaggaggagg	28	0	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41665477	T	T	41665477	1	4	61	0	1	0	0	0	0	0	0	0	620	957	33	3		3	ANK1	8	41665477	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	74194	41665477	104698545	3486	71731											
AP3M2	10947	broad.mit.edu	37	chr8	42027723	42027723	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatcgagggtgtggttgatCcttgaagctgcttggtaaag	14	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42027723	T	T	42027723	1	4	61	0	1	0	0	0	0	0	0	0	750	870	30	4		4	AP3M2	8	42027723	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	362246	42027723	104336299	3487	71732											
POLB	5423	broad.mit.edu	37	chr8	42207682	42207682	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcaaaacctgtacttcacCacctctgtaccttagccata	3	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42207682	G	G	42207682	1	3	61	0	1	0	0	0	0	0	0	0	12284	609	21	4		4	POLB	8	42207682	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	179959	42207682	104156340	3488	71733											
POTEA	340441	broad.mit.edu	37	chr8	43211974	43211974	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actagaactcaaaaatagccActatgagcaacttacagtag	6	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43211974	G	G	43211974	3	3	61	1	0	0	0	0	1	0	0	0	12356	159	6	5	1479	5	POTEA	8	43211974	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1004292	43211974	103152048	3489	71734											
KIAA0146	23514	broad.mit.edu	37	chr8	48353143	48353143	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccagcagtcaccaactgtGagtcagcctcgtaagaaaag	9	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48353143	T	T	48353143	1	4	61	0	1	0	0	0	0	0	0	0	8227	1305	45	3		3	KIAA0146	8	48353143	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5141169	48353143	98010879	3490	71735											
KIAA0146	23514	broad.mit.edu	37	chr8	48376976	48376976	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcaccaaggaaccgggaaGacctggtgcattcctaacag	11	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48376976	C	C	48376976	1	2	61	0	1	0	0	0	0	0	0	0	8227	957	33	4		4	KIAA0146	8	48376976	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23833	48376976	97987046	3491	71736											
PRKDC	5591	broad.mit.edu	37	chr8	48743158	48743158	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagaaaacgcagcggcaaAaactgacctgggccacggcc	11	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48743158	T	T	48743158	1	4	61	0	1	0	0	0	0	0	0	0	12627	29	1	5		5	PRKDC	8	48743158	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	366182	48743158	97620864	3492	71737											
SNTG1	54212	broad.mit.edu	37	chr8	51415438	51415438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccattgaatgaagattgtgCatgtaagcatttataaagaa	8	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51415438	A	A	51415438	3	1	61	1	0	0	0	0	1	0	0	0	14988	710	25	3	490	3	SNTG1	8	51415438	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2672280	51415438	94948584	3493	71738											
SNTG1	54212	broad.mit.edu	37	chr8	51571295	51571295	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgggctcataagcagCtcatgaaaacaaatcattca	7	11	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51571295	G	G	51571295	1	3	61	0	1	0	0	0	0	0	0	0	14988	812	28	4		4	SNTG1	8	51571295	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	155857	51571295	94792727	3494	71739											
PXDNL	137902	broad.mit.edu	37	chr8	52323922	52323922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacaatcagtgggtcacgCgggtaatgaaattgagccag	12	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52323922	A	A	52323922	2	1	61	1	0	0	0	0	0	0	0	1	12956	755	27	3		3	PXDNL	8	52323922	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	752627	52323922	94040100	3495	71740											
PXDNL	137902	broad.mit.edu	37	chr8	52567337	52567337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctgggaacataaaaagGtgaagaacgattataatatg	10	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52567337	T	T	52567337	1	4	61	0	1	0	0	0	0	0	0	0	12956	1276	44	3		3	PXDNL	8	52567337	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	243415	52567337	93796685	3496	71741											
RB1CC1	9821	broad.mit.edu	37	chr8	53573763	53573763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaattttgactctttctaaCagctctattacgaggcggag	8	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53573763	A	A	53573763	2	1	61	1	0	0	0	0	0	0	0	1	13207	465	17	3		3	RB1CC1	8	53573763	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1006426	53573763	92790259	3497	71742											
XKR4	114786	broad.mit.edu	37	chr8	56254038	56254038	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggcagagacatgtctcaGggtacctgtgccaggaaggc	14	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56254038	A	A	56254038	1	1	61	0	1	0	0	0	0	0	0	0	17560	1015	35	4		4	XKR4	8	56254038	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2680275	56254038	90109984	3498	71743											
PLAG1	5324	broad.mit.edu	37	chr8	57078967	57078967	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaagaatgtgcttcttcCtgggaatagctcattccaag	9	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57078967	T	T	57078967	2	4	61	1	0	0	0	0	0	0	0	1	12113	680	24	4		4	PLAG1	8	57078967	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	824929	57078967	89285055	3499	71744											
NSMAF	8439	broad.mit.edu	37	chr8	59501306	59501306	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttttggcacgaccattgttCcttcttttctttgtcatctt	5	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59501306	G	G	59501306	1	3	61	0	1	0	0	0	0	0	0	0	10769	870	30	4		4	NSMAF	8	59501306	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2422339	59501306	86862716	3500	71745											
CHD7	55636	broad.mit.edu	37	chr8	61749598	61749598	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaagaaagtcctgatgcCtttaaaaaggaagtcattct	8	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61749598	T	T	61749598	1	4	61	0	1	0	0	0	0	0	0	0	3361	696	24	4		4	CHD7	8	61749598	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2248292	61749598	84614424	3501	71746											
ASPH	444	broad.mit.edu	37	chr8	62430001	62430001	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttcagctacaaaagaagaTaagtaatccaaaggaacaca	6	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62430001	C	C	62430001	1	2	61	0	1	0	0	0	0	0	0	0	1057	1421	49	5		5	ASPH	8	62430001	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	680403	62430001	83934021	3502	71747											
ASPH	444	broad.mit.edu	37	chr8	62559278	62559278	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagtcattgattatatttTatcctaaaacttgaaaaaaa	4	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62559278	G	G	62559278	1	3	61	0	1	0	0	0	0	0	0	0	1057	1769	61	5		5	ASPH	8	62559278	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	129277	62559278	83804744	3503	71748											
ASPH	444	broad.mit.edu	37	chr8	62602342	62602342	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggttttaggcacactgCatgcacttgcctaccagagc	11	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62602342	T	T	62602342	1	4	61	0	1	0	0	0	0	0	0	0	1057	725	25	4		4	ASPH	8	62602342	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	43064	62602342	83761680	3504	71749											
NKAIN3	286183	broad.mit.edu	37	chr8	63396264	63396264	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggacaataagcccttgCcgagtcaataaattagcttc	8	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63396264	A	A	63396264	1	1	61	0	1	0	0	0	0	0	0	0	10532	754	26	3		3	NKAIN3	8	63396264	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	793922	63396264	82967758	3505	71750											
GGH	8836	broad.mit.edu	37	chr8	63948275	63948275	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacataggacgcagcaataTagtatcttccatagtttttc	6	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63948275	C	C	63948275	3	2	61	1	0	0	0	0	1	0	0	0	6421	1406	49	5	824	5	GGH	8	63948275	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	552011	63948275	82415747	3506	71751											
DNAJC5B	85479	broad.mit.edu	37	chr8	66963826	66963826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacagcggactctgtcaaCaacaggagaagctctatacg	10	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66963826	A	A	66963826	3	1	61	1	0	0	0	0	1	0	0	0	4691	478	17	3	46	3	DNAJC5B	8	66963826	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3015551	66963826	79400196	3507	71752											
DNAJC5B	85479	broad.mit.edu	37	chr8	66992566	66992566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatgggttctcccctcaCcccatcacccctcatcctca	3	20	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66992566	A	A	66992566	1	1	61	0	1	0	0	0	0	0	0	0	4691	522	18	3		3	DNAJC5B	8	66992566	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28740	66992566	79371456	3508	71753											
ADHFE1	137872	broad.mit.edu	37	chr8	67356585	67356585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatactccctacacctaaacCtttttatttttttcagatgg	3	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67356585	A	A	67356585	1	1	61	0	1	0	0	0	0	0	0	0	314	696	24	2		2	ADHFE1	8	67356585	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	364019	67356585	79007437	3509	71754											
ARFGEF1	10565	broad.mit.edu	37	chr8	68138279	68138279	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtctatcagacacataTtttgcacaatggcgaataag	9	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68138279	C	C	68138279	2	2	61	1	0	0	0	0	0	0	0	1	854	1490	52	5		5	ARFGEF1	8	68138279	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	781694	68138279	78225743	3510	71755											
ARFGEF1	10565	broad.mit.edu	37	chr8	68226679	68226679	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaagctcccagggccttTctgctgcttcctctacccct	7	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68226679	C	C	68226679	1	2	61	0	1	0	0	0	0	0	0	0	854	1798	62	5		5	ARFGEF1	8	68226679	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	88400	68226679	78137343	3511	71756											
CPA6	57094	broad.mit.edu	37	chr8	68397076	68397076	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attggtccccaaaagaggaaAaaagagtgtgagatatcctt	10	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68397076	C	C	68397076	1	2	61	0	1	0	0	0	0	0	0	0	3826	29	1	5		5	CPA6	8	68397076	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	170397	68397076	77966946	3512	71757											
PREX2	80243	broad.mit.edu	37	chr8	68939376	68939376	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacatatgctttcactagtTtttagcattttatggtggaa	8	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68939376	G	G	68939376	1	3	61	0	1	0	0	0	0	0	0	0	12583	1856	64	5		5	PREX2	8	68939376	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	542300	68939376	77424646	3513	71758											
PREX2	80243	broad.mit.edu	37	chr8	69046447	69046447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaagccagcaggaggtGgctggaccagatagcgaatg	17	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69046447	T	T	69046447	3	4	61	1	0	0	0	0	1	0	0	0	12583	1357	47	2	4275	2	PREX2	8	69046447	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	107071	69046447	77317575	3514	71759											
PREX2	80243	broad.mit.edu	37	chr8	69136980	69136980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgtactgattgtaattaCggagattgcccttgaaacac	9	8	0	3	rs143449178	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69136980	A	A	69136980	1	1	61	0	1	0	0	0	0	0	0	0	12583	551	19	3		3	PREX2	8	69136980	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	90533	69136980	77227042	3515	71760											
SLCO5A1	81796	broad.mit.edu	37	chr8	70650550	70650550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccattcagcaacatttgcCaccaaggaataaaaatagaa	6	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70650550	A	A	70650550	1	1	61	0	1	0	0	0	0	0	0	0	14845	609	21	2		2	SLCO5A1	8	70650550	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1513570	70650550	75713472	3516	71761											
EYA1	2138	broad.mit.edu	37	chr8	72238864	72238864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaaggcaggcctgttcctGggagagctggggctcctctg	15	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72238864	T	T	72238864	1	4	61	0	1	0	0	0	0	0	0	0	5371	1363	47	2		2	EYA1	8	72238864	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1588314	72238864	74125158	3517	71762											
TRPA1	8989	broad.mit.edu	37	chr8	72950138	72950138	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttattatgacataatatctCaagtaatagcttatcaatta	3	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72950138	A	A	72950138	1	1	61	0	1	0	0	0	0	0	0	0	16702	841	29	3		3	TRPA1	8	72950138	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	711274	72950138	73413884	3518	71763											
TRPA1	8989	broad.mit.edu	37	chr8	72959357	72959357	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attataacaaaataaatttcAgataatgatgataaaataaa	3	2	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72959357	C	C	72959357	1	2	61	0	1	0	0	0	0	0	0	0	16702	203	7	5		5	TRPA1	8	72959357	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9219	72959357	73404665	3519	71764											
TRPA1	8989	broad.mit.edu	37	chr8	72974025	72974025	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttttaatgctagaatcaaTgtttaaatctcaatgaaaga	7	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72974025	A	A	72974025	1	1	61	0	1	0	0	0	0	0	0	0	16702	1479	51	5		5	TRPA1	8	72974025	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	14668	72974025	73389997	3520	71765											
KCNB2	9312	broad.mit.edu	37	chr8	73531265	73531265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctgttctgaagatgacCgtcgactttgaccctttcca	7	13	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73531265	A	A	73531265	1	1	61	0	1	0	0	0	0	0	0	0	8083	667	23	1		1	KCNB2	8	73531265	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	557240	73531265	72832757	3521	71766											
LY96	23643	broad.mit.edu	37	chr8	74922218	74922218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactatttgagggcctaatgGgattttttcttttaaaggga	10	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74922218	T	T	74922218	1	4	61	0	1	0	0	0	0	0	0	0	9190	1247	43	2		2	LY96	8	74922218	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1390953	74922218	71441804	3522	71767											
CRISPLD1	83690	broad.mit.edu	37	chr8	75929681	75929681	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagaaatggtattcaaacaAttgggtaagtaccaaaataa	7	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75929681	G	G	75929681	3	3	61	1	0	0	0	0	1	0	0	0	3914	101	4	5	1157	5	CRISPLD1	8	75929681	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1007463	75929681	70434341	3523	71768											
ZFHX4	79776	broad.mit.edu	37	chr8	77619997	77619997	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccctgaagaggaatggaGggcagtaattggagatatct	13	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77619997	A	A	77619997	3	1	61	1	0	0	0	0	1	0	0	0	17761	1000	35	4	2813	4	ZFHX4	8	77619997	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1690316	77619997	68744025	3524	71769											
ZFHX4	79776	broad.mit.edu	37	chr8	77761709	77761709	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtatcaaataagaaatgcAttaactaatagtggccatgt	7	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77761709	T	T	77761709	1	4	61	0	1	0	0	0	0	0	0	0	17761	232	8	5		5	ZFHX4	8	77761709	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	141712	77761709	68602313	3525	71770											
PEX2	5828	broad.mit.edu	37	chr8	77896573	77896573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagtctcaaatagtacagCgaataatcacttcttacttg	6	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77896573	A	A	77896573	1	1	61	0	1	0	0	0	0	0	0	0	11840	783	27	3		3	PEX2	8	77896573	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	134864	77896573	68467449	3526	71771											
PKIA	5569	broad.mit.edu	37	chr8	79483847	79483847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcctctaagggacttgtaAcagttccccccaagagtaac	7	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79483847	T	T	79483847	1	4	61	0	1	0	0	0	0	0	0	0	12068	58	2	5		5	PKIA	8	79483847	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1587274	79483847	66880175	3527	71772											
ZBTB10	65986	broad.mit.edu	37	chr8	81412348	81412348	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagggccaaatagaaaactAccaaatgaatgacagtagtt	9	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81412348	T	T	81412348	3	4	61	1	0	0	0	0	1	0	0	0	17649	391	14	5	1598	5	ZBTB10	8	81412348	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1928501	81412348	64951674	3528	71773											
ZNF704	619279	broad.mit.edu	37	chr8	81582715	81582715	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagcagatgggggctgcatCcctgaagagagagctgcctt	15	9	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81582715	T	T	81582715	1	4	61	0	1	0	0	0	0	0	0	0	18234	870	30	4		4	ZNF704	8	81582715	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	170367	81582715	64781307	3529	71774											
ZNF704	619279	broad.mit.edu	37	chr8	81751193	81751193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtcctgggacagaccagCagtagtgggagctgcctctt	14	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81751193	A	A	81751193	1	1	61	0	1	0	0	0	0	0	0	0	18234	725	25	3		3	ZNF704	8	81751193	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	168478	81751193	64612829	3530	71775											
PAG1	55824	broad.mit.edu	37	chr8	81888954	81888954	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgctgggcctccctgctGgtggaagtgtgctgtttgga	15	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81888954	A	A	81888954	3	1	61	1	0	0	0	0	1	0	0	0	11482	1348	47	4	178	4	PAG1	8	81888954	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	137761	81888954	64475068	3531	71776											
RALYL	138046	broad.mit.edu	37	chr8	85097200	85097200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaggatggcaccggccCtcgcacgctcaactcctgct	10	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85097200	A	A	85097200	1	1	61	0	1	0	0	0	0	0	0	0	13128	696	24	2		2	RALYL	8	85097200	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3208246	85097200	61266822	3532	71777											
RALYL	138046	broad.mit.edu	37	chr8	85208153	85208153	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttgcttttgctgactgtgGaagggacactaccaggacac	12	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85208153	T	T	85208153	1	4	61	0	1	0	0	0	0	0	0	0	13128	1189	41	3		3	RALYL	8	85208153	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	110953	85208153	61155869	3533	71778											
RALYL	138046	broad.mit.edu	37	chr8	85441629	85441629	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatcaactcccgtgttttcAtcggcaatctaaatacggca	6	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85441629	T	T	85441629	3	4	61	1	0	0	0	0	1	0	0	0	13128	217	8	5	118	5	RALYL	8	85441629	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	233476	85441629	60922393	3534	71779											
RALYL	138046	broad.mit.edu	37	chr8	85508575	85508575	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttttttctcagcaactgcCatatttgaaaaccatatccc	4	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85508575	T	T	85508575	1	4	61	0	1	0	0	0	0	0	0	0	13128	609	21	4		4	RALYL	8	85508575	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66946	85508575	60855447	3535	71780											
RALYL	138046	broad.mit.edu	37	chr8	85591932	85591932	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagaactaattcatcagttgGatggctttgaccctcaaggc	10	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85591932	A	A	85591932	1	1	61	0	1	0	0	0	0	0	0	0	13128	1189	41	4		4	RALYL	8	85591932	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	83357	85591932	60772090	3536	71781											
RALYL	138046	broad.mit.edu	37	chr8	85799977	85799977	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagatgacagatgggatagAggaggacttcgatgaagatg	16	3	0	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85799977	T	T	85799977	3	4	61	1	0	0	0	0	1	0	0	0	13128	304	11	5	893	5	RALYL	8	85799977	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	208045	85799977	60564045	3537	71782											
CA2	760	broad.mit.edu	37	chr8	86393054	86393055	+	3'UTR	INS	-	C	C													gtatccaaataatgaatcttINScgggtgtttccctttagcta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86393055	C	C	86393054	6	5	61	0	1	1	1	0	0	0	0	0	2542	1798	62	0		0	CA2	8	86393054	3'UTR	INS	-	TCGA-17-Z031-01A-01W-0746-08	593077	86393054	59970968	3538	71783											
ATP6V0D2	245972	broad.mit.edu	37	chr8	87155213	87155213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccttgaattttgttatgCtaaataaggtgcttacatat	7	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87155213	A	A	87155213	1	1	61	0	1	0	0	0	0	0	0	0	1178	812	28	3		3	ATP6V0D2	8	87155213	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	762159	87155213	59208809	3539	71784											
CNGB3	54714	broad.mit.edu	37	chr8	87670413	87670413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccaggtgagccagacaCtgacagcctgacagctcacc	10	16	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87670413	A	A	87670413	1	1	61	0	1	0	0	0	0	0	0	0	3633	580	20	3		3	CNGB3	8	87670413	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	515200	87670413	58693609	3540	71785											
CNGB3	54714	broad.mit.edu	37	chr8	87674106	87674106	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtcagatttgggtcatcaCagtccacaaaccatattggt	8	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87674106	G	G	87674106	1	3	61	0	1	0	0	0	0	0	0	0	3633	493	17	4		4	CNGB3	8	87674106	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3693	87674106	58689916	3541	71786											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885654	88885654	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcacaggaccaggcatcaggGatctggaaactgcaaagcat	12	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88885654	A	A	88885654	2	1	61	1	0	0	0	0	0	0	0	1	4305	1164	41	4		4	DCAF4L2	8	88885654	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1211548	88885654	57478368	3542	71787											
MMP16	4325	broad.mit.edu	37	chr8	89179959	89179959	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaatgggtatctcctccAattcctggtccagggaagta	9	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89179959	G	G	89179959	2	3	61	1	0	0	0	0	0	0	0	1	9748	126	5	5		5	MMP16	8	89179959	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	294305	89179959	57184063	3543	71788											
NBN	4683	broad.mit.edu	37	chr8	90958406	90958406	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttttagttgaccataatCatcatttatgccagatggat	6	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90958406	A	A	90958406	3	1	61	1	0	0	0	0	1	0	0	0	10285	826	29	3	248	3	NBN	8	90958406	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1778447	90958406	55405616	3544	71789											
NBN	4683	broad.mit.edu	37	chr8	90993627	90993627	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttacttccaaacactccaAaagtaataccatcccccgac	2	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90993627	G	G	90993627	3	3	61	1	0	0	0	0	1	0	0	0	10285	14	1	5	2024	5	NBN	8	90993627	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	35221	90993627	55370395	3545	71790											
DECR1	1666	broad.mit.edu	37	chr8	91040322	91040322	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggggagtttatatgcagatGttacctcgtcctttgcacct	10	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91040322	C	C	91040322	1	2	61	0	1	0	0	0	0	0	0	0	4415	1392	48	4		4	DECR1	8	91040322	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46695	91040322	55323700	3546	71791											
SLC26A7	115111	broad.mit.edu	37	chr8	92352615	92352615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtttgatgacttcaatatGgtccttctttccacagaatt	6	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92352615	T	T	92352615	1	4	61	0	1	0	0	0	0	0	0	0	14636	1363	47	2		2	SLC26A7	8	92352615	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1312293	92352615	54011407	3547	71792											
SLC26A7	115111	broad.mit.edu	37	chr8	92355744	92355744	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgctgggccttcactcccAttctaggagagtgggaagag	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92355744	T	T	92355744	1	4	61	0	1	0	0	0	0	0	0	0	14636	232	8	5		5	SLC26A7	8	92355744	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3129	92355744	54008278	3548	71793											
RUNX1T1	862	broad.mit.edu	37	chr8	93017655	93017655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcaaatgcatgccatgGgctggaaccacaggcacaat	11	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93017655	T	T	93017655	1	4	61	0	1	0	0	0	0	0	0	0	13858	1247	43	2		2	RUNX1T1	8	93017655	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	661911	93017655	53346367	3549	71794											
RUNX1T1	862	broad.mit.edu	37	chr8	93097004	93097004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcttaggtgtccaaacGtgaagcaacccagggtttta	11	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93097004	T	T	93097004	1	4	61	0	1	0	0	0	0	0	0	0	13858	1160	40	3		3	RUNX1T1	8	93097004	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	79349	93097004	53267018	3550	71795											
CDH17	1015	broad.mit.edu	37	chr8	95186160	95186160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattctcactctggcctccCatgtccttcactgagatcac	6	15	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95186160	A	A	95186160	3	1	61	1	0	0	0	0	1	0	0	0	3132	594	21	2	1898	2	CDH17	8	95186160	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2089156	95186160	51177862	3551	71796											
ESRP1	54845	broad.mit.edu	37	chr8	95690554	95690554	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctccacagcgtactaccCagcaggcactcagctcttca	7	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95690554	T	T	95690554	3	4	61	1	0	0	0	0	1	0	0	0	5300	594	21	4	1825	4	ESRP1	8	95690554	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	504394	95690554	50673468	3552	71797											
INTS8	55656	broad.mit.edu	37	chr8	95841374	95841374	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttccaggaaactggatgtGgtgtggggggcggggggcga	21	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95841374	C	C	95841374	1	2	61	0	1	0	0	0	0	0	0	0	7854	1363	47	4		4	INTS8	8	95841374	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	150820	95841374	50522648	3553	71798											
UQCRB	7381	broad.mit.edu	37	chr8	97247848	97247848	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgttacgtcacatcgcgaaCagagaaaggccgcttgcgca	12	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97247848	G	G	97247848	1	3	61	0	1	0	0	0	0	0	0	0	17144	493	17	4		4	UQCRB	8	97247848	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1406474	97247848	49116174	3554	71799											
PTDSS1	9791	broad.mit.edu	37	chr8	97285519	97285519	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctcaatgttgtttttctAttttcagggatgactctgtt	8	6	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97285519	C	C	97285519	1	2	61	0	1	0	0	0	0	0	0	0	12842	464	16	5		5	PTDSS1	8	97285519	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	37671	97285519	49078503	3555	71800											
PGCP	10404	broad.mit.edu	37	chr8	97795191	97795191	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccatctgagacctcatcAgaattgcctgtactgtccat	6	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97795191	G	G	97795191	1	3	61	0	1	0	0	0	0	0	0	0	11881	203	7	5		5	PGCP	8	97795191	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	509672	97795191	48568831	3556	71801											
STK3	6788	broad.mit.edu	37	chr8	99917237	99917237	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtatcgcttatagtagtgGagtgctgcatatgcatcgtt	11	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99917237	T	T	99917237	1	4	61	0	1	0	0	0	0	0	0	0	15413	1189	41	3		3	STK3	8	99917237	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2122046	99917237	46446785	3557	71802											
STK3	6788	broad.mit.edu	37	chr8	99917354	99917354	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtctgccacacgacccgtAcgatctactgggcactcttt	8	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99917354	G	G	99917354	1	3	61	0	1	0	0	0	0	0	0	0	15413	406	14	5		5	STK3	8	99917354	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	117	99917354	46446668	3558	71803											
OSR2	116039	broad.mit.edu	37	chr8	99961477	99961477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctattccaccccaagcaGggggccattgcccacgtcct	8	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99961477	T	T	99961477	3	4	61	1	0	0	0	0	1	0	0	0	11388	991	35	2	299	2	OSR2	8	99961477	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44123	99961477	46402545	3559	71804											
VPS13B	157680	broad.mit.edu	37	chr8	100182249	100182249	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctgtgtgaacacttgcatCttttctttttgttttagata	7	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100182249	G	G	100182249	1	3	61	0	1	0	0	0	0	0	0	0	17317	928	32	4		4	VPS13B	8	100182249	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	220772	100182249	46181773	3560	71805											
VPS13B	157680	broad.mit.edu	37	chr8	100182286	100182286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatatttggtttccaggcagGactgacgtctttggattgca	12	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100182286	T	T	100182286	3	4	61	1	0	0	0	0	1	0	0	0	17317	1174	41	3	2328	3	VPS13B	8	100182286	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37	100182286	46181736	3561	71806											
VPS13B	157680	broad.mit.edu	37	chr8	100568576	100568576	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcagtaatccaaaggaAaaaaatggtattgacactat	6	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100568576	C	C	100568576	1	2	61	0	1	0	0	0	0	0	0	0	17317	29	1	5		5	VPS13B	8	100568576	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	386290	100568576	45795446	3562	71807											
VPS13B	157680	broad.mit.edu	37	chr8	100587926	100587926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcaattttgacccccGttttgacagatttttctgtc	9	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100587926	T	T	100587926	3	4	61	1	0	0	0	0	1	0	0	0	17317	1145	40	3	5381	3	VPS13B	8	100587926	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19350	100587926	45776096	3563	71808											
SNX31	169166	broad.mit.edu	37	chr8	101601191	101601191	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttctctggggcccatccGtatccagcagagttccctac	10	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101601191	A	A	101601191	3	1	61	1	0	0	0	0	1	0	0	0	15015	1145	40	4	343	4	SNX31	8	101601191	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1013265	101601191	44762831	3564	71809											
PABPC1	26986	broad.mit.edu	37	chr8	101730197	101730197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagagacaatctgttagcCatctaacctggatatttgtg	9	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101730197	A	A	101730197	1	1	61	0	1	0	0	0	0	0	0	0	11457	609	21	2		2	PABPC1	8	101730197	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	129006	101730197	44633825	3565	71810											
ZNF706	51123	broad.mit.edu	37	chr8	102212243	102212243	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaccttatgcctgaacaTcagctaattctggaggaagt	8	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102212243	C	C	102212243	3	2	61	1	0	0	0	0	1	0	0	0	18238	1435	50	5	16	5	ZNF706	8	102212243	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	482046	102212243	44151779	3566	71811											
ZNF706	51123	broad.mit.edu	37	chr8	102212294	102212294	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgcttgctctcaaagtgcTgcttgaaggtcttagggtct	12	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102212294	A	A	102212294	3	1	61	1	0	0	0	0	1	0	0	0	18238	1580	55	5	67	5	ZNF706	8	102212294	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	51	102212294	44151728	3567	71812											
ATP6V1C1	528	broad.mit.edu	37	chr8	104078760	104078760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatagacagaaaagggaGggtaagtatgaaacttaatc	12	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104078760	T	T	104078760	1	4	61	0	1	0	0	0	0	0	0	0	1184	1015	35	2		2	ATP6V1C1	8	104078760	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1866466	104078760	42285262	3568	71813											
RIMS2	9699	broad.mit.edu	37	chr8	104671575	104671575	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagaagtatggtaccagaaTagggaagaacacctgtgtac	12	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104671575	A	A	104671575	1	1	61	0	1	0	0	0	0	0	0	0	13479	1421	49	5		5	RIMS2	8	104671575	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	592815	104671575	41692447	3569	71814											
RIMS2	9699	broad.mit.edu	37	chr8	104672498	104672498	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgtggtgaggctgcttgcCgtgccctgcagtaccacaag	13	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104672498	T	T	104672498	1	4	61	0	1	0	0	0	0	0	0	0	13479	667	23	4		4	RIMS2	8	104672498	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	923	104672498	41691524	3570	71815											
RIMS2	9699	broad.mit.edu	37	chr8	104898178	104898178	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagaccagacttgaggcgtActgactcactacggaaacag	10	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104898178	T	T	104898178	3	4	61	1	0	0	0	0	1	0	0	0	13479	391	14	5	1491	5	RIMS2	8	104898178	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	225680	104898178	41465844	3571	71816											
DPYS	1807	broad.mit.edu	37	chr8	105393457	105393457	+	Frame_Shift_Del	DEL	G	-	-													cctgtttcctggtccctgctGtggcatcttcttttgtcact							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105393457	-	-	105393457	7	5	61	1	0	1	0	1	0	0	0	0	4786	1377	48	0	34	0	DPYS	8	105393457	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	495279	105393457	40970565	3572	71817											
ZFPM2	23414	broad.mit.edu	37	chr8	106365453	106365453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctgaagggatcccccCaccccatactctcatactgc	6	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106365453	A	A	106365453	1	1	61	0	1	0	0	0	0	0	0	0	17784	609	21	2		2	ZFPM2	8	106365453	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	971996	106365453	39998569	3573	71818											
ZFPM2	23414	broad.mit.edu	37	chr8	106659547	106659547	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagaaataaatgcatgcaatCaattcaccactaaagtgcaa	5	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106659547	T	T	106659547	1	4	61	0	1	0	0	0	0	0	0	0	17784	841	29	4		4	ZFPM2	8	106659547	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	294094	106659547	39704475	3574	71819											
OXR1	55074	broad.mit.edu	37	chr8	107754582	107754582	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatattttatttataaagaGttgacataacatactgccca	4	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107754582	T	T	107754582	1	4	61	0	1	0	0	0	0	0	0	0	11428	1044	36	3		3	OXR1	8	107754582	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1095035	107754582	38609440	3575	71820											
ANGPT1	284	broad.mit.edu	37	chr8	108367416	108367416	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggattataggcgtgagcCactgtgcctcgccctctgct	12	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108367416	A	A	108367416	1	1	61	0	1	0	0	0	0	0	0	0	610	609	21	2		2	ANGPT1	8	108367416	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	612834	108367416	37996606	3576	71821											
EIF3E	3646	broad.mit.edu	37	chr8	109240540	109240540	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataatattatcgcgacctttGgggtgattgaagaaaacaaa	9	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109240540	A	A	109240540	2	1	61	1	0	0	0	0	0	0	0	1	5057	1335	47	4		4	EIF3E	8	109240540	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	873124	109240540	37123482	3577	71822											
PKHD1L1	93035	broad.mit.edu	37	chr8	110456009	110456009	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaattcaaaaagattgCtatttgaggtttcaagttgt	7	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110456009	G	G	110456009	3	3	61	1	0	0	0	0	1	0	0	0	12067	796	28	4	4815	4	PKHD1L1	8	110456009	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1215469	110456009	35908013	3578	71823											
PKHD1L1	93035	broad.mit.edu	37	chr8	110466367	110466367	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaacaagatttttccttgtGatgtatttcaaaattgtatg	6	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110466367	T	T	110466367	1	4	61	0	1	0	0	0	0	0	0	0	12067	1305	45	3		3	PKHD1L1	8	110466367	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10358	110466367	35897655	3579	71824											
PKHD1L1	93035	broad.mit.edu	37	chr8	110508994	110508994	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagagtgaaccataaatggcAgagccataaaaatatttgat	8	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110508994	G	G	110508994	1	3	61	0	1	0	0	0	0	0	0	0	12067	203	7	5		5	PKHD1L1	8	110508994	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	42627	110508994	35855028	3580	71825											
PKHD1L1	93035	broad.mit.edu	37	chr8	110509228	110509228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatatgaaccaagatggcCttcctggatgttctcttata	7	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110509228	A	A	110509228	3	1	61	1	0	0	0	0	1	0	0	0	12067	681	24	2	10662	2	PKHD1L1	8	110509228	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	234	110509228	35854794	3581	71826											
PKHD1L1	93035	broad.mit.edu	37	chr8	110522855	110522855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaatagcttagctggcTgggtaacggtggatgggtaa	16	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110522855	A	A	110522855	1	1	61	0	1	0	0	0	0	0	0	0	12067	1595	55	5		5	PKHD1L1	8	110522855	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13627	110522855	35841167	3582	71827											
CSMD3	114788	broad.mit.edu	37	chr8	113293389	113293389	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attactgatttttaaatattGagaatatacttacttgtaca	4	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113293389	T	T	113293389	1	4	61	0	1	0	0	0	0	0	0	0	3980	1305	45	3		3	CSMD3	8	113293389	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2770534	113293389	33070633	3583	71828											
CSMD3	114788	broad.mit.edu	37	chr8	113323366	113323366	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgataatatatccatgagGtggggattctggtgtactac	11	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113323366	A	A	113323366	3	1	61	1	0	0	0	0	1	0	0	0	3980	1261	44	4	3485	4	CSMD3	8	113323366	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29977	113323366	33040656	3584	71829											
CSMD3	114788	broad.mit.edu	37	chr8	113326625	113326625	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagaacatttgtacttaattGatgaatatccaataaatata	4	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113326625	A	A	113326625	1	1	61	0	1	0	0	0	0	0	0	0	3980	1305	45	4		4	CSMD3	8	113326625	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3259	113326625	33037397	3585	71830											
CSMD3	114788	broad.mit.edu	37	chr8	113662443	113662443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttttttcgcatagaaggGgctcttcatgactcaacctg	10	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113662443	T	T	113662443	3	4	61	1	0	0	0	0	1	0	0	0	3980	1232	43	2	8195	2	CSMD3	8	113662443	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	335818	113662443	32701579	3586	71831											
CSMD3	114788	broad.mit.edu	37	chr8	113697652	113697652	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgttgtaagtgatgttaAagccacgtcctgacattgag	10	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113697652	G	G	113697652	3	3	61	1	0	0	0	0	1	0	0	0	3980	14	1	5	8886	5	CSMD3	8	113697652	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	35209	113697652	32666370	3587	71832											
CSMD3	114788	broad.mit.edu	37	chr8	114389030	114389030	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccaactccacattcaacCgggttgtgctgaagaggttg	11	10	1	2	rs34910338		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114389030	T	T	114389030	1	4	61	0	1	0	0	0	0	0	0	0	3980	667	23	4		4	CSMD3	8	114389030	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	691378	114389030	31974992	3588	71833											
CSMD3	114788	broad.mit.edu	37	chr8	114389069	114389069	+	Intron	SNP	C	G	G													tgtttatgagtcgcaacaacCggccacctctgcccctttcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114389069	G	G	114389069	1	3	61	0	1	0	0	0	0	0	0	0	3980	667	23	4		4	CSMD3	8	114389069	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	39	114389069	31974953	3589	71834	328	2									
CSMD3	114788	broad.mit.edu	37	chr8	114389078	114389078	+	Intron	SNP	C	A	A													gtcgcaacaaccggccacctCtgcccctttcccggatgatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114389078	A	A	114389078	1	1	61	0	1	0	0	0	0	0	0	0	3980	928	32	3		3	CSMD3	8	114389078	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9	114389078	31974944	3590	71835	328	2									
CSMD3	114788	broad.mit.edu	37	chr8	114389149	114389149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacagccgtggttgtgggGgccataacggatgacgtgcg	16	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114389149	T	T	114389149	1	4	61	0	1	0	0	0	0	0	0	0	3980	1247	43	2		2	CSMD3	8	114389149	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71	114389149	31974873	3591	71836											
EIF3H	8667	broad.mit.edu	37	chr8	117671153	117671153	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catagtatgtggactgatacCagcccacgtgaagatgatca	10	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117671153	G	G	117671153	3	3	61	1	0	0	0	0	1	0	0	0	5060	595	21	4	726	4	EIF3H	8	117671153	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3282004	117671153	28692869	3592	71837											
EIF3H	8667	broad.mit.edu	37	chr8	117768099	117768099	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcggaagtacaagtctcgCgtgacgtcactcgcaggccg	13	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117768099	A	A	117768099	1	1	61	0	1	0	0	0	0	0	0	0	5060	783	27	3		3	EIF3H	8	117768099	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	96946	117768099	28595923	3593	71838											
SLC30A8	169026	broad.mit.edu	37	chr8	118126099	118126099	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaaataattgtaattcatGatacaataatgtagatgcac	5	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118126099	T	T	118126099	1	4	61	0	1	0	0	0	0	0	0	0	14675	1305	45	3		3	SLC30A8	8	118126099	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	358000	118126099	28237923	3594	71839											
TAF2	6873	broad.mit.edu	37	chr8	120758784	120758784	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagttgccagtagcattttaTaattggcacagtactaatca	7	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120758784	A	A	120758784	1	1	61	0	1	0	0	0	0	0	0	0	15643	1421	49	5		5	TAF2	8	120758784	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2632685	120758784	25605238	3595	71840											
DEPDC6	64798	broad.mit.edu	37	chr8	120977584	120977584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggttcaggaaggtgagGccaccacgaggaaagaggca	17	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120977584	T	T	120977584	3	4	61	1	0	0	0	0	1	0	0	0	4483	1203	42	3	552	3	DEPDC6	8	120977584	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	218800	120977584	25386438	3596	71841											
COL14A1	7373	broad.mit.edu	37	chr8	121138171	121138171	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagctaggtagagctcgatGatggaggatggggacagtag	17	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121138171	A	A	121138171	1	1	61	0	1	0	0	0	0	0	0	0	3703	1305	45	4		4	COL14A1	8	121138171	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	160587	121138171	25225851	3597	71842											
COL14A1	7373	broad.mit.edu	37	chr8	121239508	121239508	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttattgaaggcctggagcCcggtacggagtatgaagttt	14	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121239508	G	G	121239508	3	3	61	1	0	0	0	0	1	0	0	0	3703	623	22	4	2116	4	COL14A1	8	121239508	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	101337	121239508	25124514	3598	71843											
COL14A1	7373	broad.mit.edu	37	chr8	121379503	121379503	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaggtaaatcttccttccTaacaagagactgcaaatgta	7	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121379503	A	A	121379503	1	1	61	0	1	0	0	0	0	0	0	0	3703	1537	53	5		5	COL14A1	8	121379503	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	139995	121379503	24984519	3599	71844											
MTBP	27085	broad.mit.edu	37	chr8	121476051	121476051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttgtttttatacttgcCatttaaggatgtgtaagaaa	8	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121476051	T	T	121476051	1	4	61	0	1	0	0	0	0	0	0	0	10006	609	21	4		4	MTBP	8	121476051	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	96548	121476051	24887971	3600	71845											
SNTB1	6641	broad.mit.edu	37	chr8	121650187	121650187	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcttcaatacgcttaacTtttatttcagccatcttgag	6	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121650187	G	G	121650187	1	3	61	0	1	0	0	0	0	0	0	0	14986	1624	56	5		5	SNTB1	8	121650187	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	174136	121650187	24713835	3601	71846											
SNTB1	6641	broad.mit.edu	37	chr8	121748452	121748452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccccatgattcaattacCcctaccttgcctctcccttg	4	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121748452	A	A	121748452	1	1	61	0	1	0	0	0	0	0	0	0	14986	638	22	2		2	SNTB1	8	121748452	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	98265	121748452	24615570	3602	71847											
SNTB1	6641	broad.mit.edu	37	chr8	121774697	121774697	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccatgaaaggctgtgcattAggacctgatccctgtgctgt	12	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121774697	G	G	121774697	1	3	61	0	1	0	0	0	0	0	0	0	14986	435	15	5		5	SNTB1	8	121774697	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	26245	121774697	24589325	3603	71848											
HAS2	3037	broad.mit.edu	37	chr8	122626320	122626320	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggaactaaggtgttgtgTgtgactgcaaacgtcaaaac	12	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122626320	A	A	122626320	1	1	61	0	1	0	0	0	0	0	0	0	7028	1711	59	5		5	HAS2	8	122626320	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	851623	122626320	23737702	3604	71849											
ZHX2	22882	broad.mit.edu	37	chr8	123847789	123847789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactgagaagatggcgactGggaagatggcagctgagaag	16	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123847789	T	T	123847789	1	4	61	0	1	0	0	0	0	0	0	0	17802	1363	47	2		2	ZHX2	8	123847789	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1221469	123847789	22516233	3605	71850											
FAM91A1	157769	broad.mit.edu	37	chr8	124798622	124798622	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttaattttgggcttgaatAtaagactgaattttgatgga	9	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124798622	G	G	124798622	1	3	61	0	1	0	0	0	0	0	0	0	5708	464	16	5		5	FAM91A1	8	124798622	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	950833	124798622	21565400	3606	71851											
FAM91A1	157769	broad.mit.edu	37	chr8	124820580	124820580	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catttgaaatggtcattgagGaagcaactatagattcagca	9	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124820580	A	A	124820580	3	1	61	1	0	0	0	0	1	0	0	0	5708	1175	41	4	2183	4	FAM91A1	8	124820580	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21958	124820580	21543442	3607	71852											
FER1L6	654463	broad.mit.edu	37	chr8	125130990	125130990	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgggataatcaaaatactttCtggaattctccaacttggta	7	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125130990	A	A	125130990	1	1	61	0	1	0	0	0	0	0	0	0	5872	928	32	3		3	FER1L6	8	125130990	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	310410	125130990	21233032	3608	71853											
ADCY8	114	broad.mit.edu	37	chr8	131902040	131902040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgaccttgtggtggaaCatggacacctaacataatct	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131902040	A	A	131902040	1	1	61	0	1	0	0	0	0	0	0	0	300	493	17	3		3	ADCY8	8	131902040	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6771050	131902040	14461982	3609	71854											
ADCY8	114	broad.mit.edu	37	chr8	131909166	131909166	+	Intron	DEL	G	-	-													tggagcctgtgtctgaggtaGggaaactgaatagggcaatg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131909166	-	-	131909166	6	5	61	0	1	1	0	1	0	0	0	0	300	1015	35	0		0	ADCY8	8	131909166	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	7126	131909166	14454856	3610	71855											
EFR3A	23167	broad.mit.edu	37	chr8	133014173	133014173	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaccaaagaaacttgttgGcttctatagacatgtatcat	6	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133014173	C	C	133014173	1	2	61	0	1	0	0	0	0	0	0	0	4998	1218	42	4		4	EFR3A	8	133014173	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1105007	133014173	13349849	3611	71856											
LRRC6	23639	broad.mit.edu	37	chr8	133623603	133623603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcgattaaagaggtatcCatataccttcaaaattaaac	4	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133623603	A	A	133623603	3	1	61	1	0	0	0	0	1	0	0	0	9103	594	21	2	435	2	LRRC6	8	133623603	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	609430	133623603	12740419	3612	71857											
TMEM71	137835	broad.mit.edu	37	chr8	133764277	133764277	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataacgcactttaaatctcTattcagtacatccagtccca	4	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133764277	C	C	133764277	1	2	61	0	1	0	0	0	0	0	0	0	16323	1537	53	5		5	TMEM71	8	133764277	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	140674	133764277	12599745	3613	71858											
TMEM71	137835	broad.mit.edu	37	chr8	133771050	133771050	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggagtctaatcgttcaAaagataattgcgtatcacag	8	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133771050	C	C	133771050	1	2	61	0	1	0	0	0	0	0	0	0	16323	29	1	5		5	TMEM71	8	133771050	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6773	133771050	12592972	3614	71859											
TG	7038	broad.mit.edu	37	chr8	133899126	133899126	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtcaatttttccagcaActtggtcttgcaagcttctt	6	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133899126	T	T	133899126	3	4	61	1	0	0	0	0	1	0	0	0	15936	40	2	5	1543	5	TG	8	133899126	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	128076	133899126	12464896	3615	71860											
TG	7038	broad.mit.edu	37	chr8	133925116	133925116	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgattcctgggtgaccctGaaccagttcatccccttctc	7	15	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133925116	T	T	133925116	1	4	61	0	1	0	0	0	0	0	0	0	15936	1305	45	3		3	TG	8	133925116	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25990	133925116	12438906	3616	71861											
TG	7038	broad.mit.edu	37	chr8	133974012	133974013	+	Intron	INS	-	A	A													tgctgggtgagaggcatgagINSaaaaagcctctgaccccata					rs140576956	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133974013	A	A	133974012	6	5	61	0	1	1	1	0	0	0	0	0	15936	957	33	0		0	TG	8	133974012	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	48896	133974012	12390010	3617	71862											
TG	7038	broad.mit.edu	37	chr8	133984821	133984822	+	Intron	INS	-	TT	TT													ttcctgattgtggttttttgINSttttttttttttccacccca					rs1554541		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	133984822	TT	TT	133984821	6	5	61	0	1	1	1	0	0	0	0	0	15936	1392	48	0		0	TG	8	133984821	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	10809	133984821	12379201	3618	71863											
TG	7038	broad.mit.edu	37	chr8	133985095	133985095	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagattaatgaagactcatTgggttcaagcaacagaaata	9	5	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133985095	A	A	133985095	1	1	61	0	1	0	0	0	0	0	0	0	15936	1827	63	5		5	TG	8	133985095	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	274	133985095	12378927	3619	71864											
ZFAT	57623	broad.mit.edu	37	chr8	135517933	135517933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggaggaagggagcctcGggtcaaggagtgcaggtggc	21	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135517933	A	A	135517933	1	1	61	0	1	0	0	0	0	0	0	0	17758	1131	39	4		4	ZFAT	8	135517933	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1532838	135517933	10846089	3620	71865											
ZFAT	57623	broad.mit.edu	37	chr8	135651148	135651149	+	Intron	DNP	CA	AG	AG													aatgccagtcatctgtctggCagaggagtggcacttcagca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	135651149	AG	AG	135651148	1	1	61	0	1	0	0	0	0	0	0	0	17758	725	25	3		3	ZFAT	8	135651148	Intron	DNP	CA	TCGA-17-Z031-01A-01W-0746-08	133215	135651148	10712874	3621	71866											
KHDRBS3	10656	broad.mit.edu	37	chr8	136554719	136554719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagggttttttattttacGtttagccccgttttatgtgg	9	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136554719	T	T	136554719	1	4	61	0	1	0	0	0	0	0	0	0	8218	1160	40	3		3	KHDRBS3	8	136554719	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	903571	136554719	9809303	3622	71867											
FAM135B	51059	broad.mit.edu	37	chr8	139158024	139158024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatttcttaccgtttcCtctccctcccgaaataaaac	2	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139158024	A	A	139158024	1	1	61	0	1	0	0	0	0	0	0	0	5495	696	24	2		2	FAM135B	8	139158024	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2603305	139158024	7205998	3623	71868											
FAM135B	51059	broad.mit.edu	37	chr8	139183308	139183308	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggttctgaggaattccaAcctggcctgagccacgctgc	11	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139183308	G	G	139183308	1	3	61	0	1	0	0	0	0	0	0	0	5495	58	2	5		5	FAM135B	8	139183308	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	25284	139183308	7180714	3624	71869											
FAM135B	51059	broad.mit.edu	37	chr8	139255306	139255306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcctcttcctggacgaGtaaaactaaacaaaagataa	8	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139255306	T	T	139255306	3	4	61	1	0	0	0	0	1	0	0	0	5495	1029	36	3	3728	3	FAM135B	8	139255306	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71998	139255306	7108716	3625	71870											
FAM135B	51059	broad.mit.edu	37	chr8	139484990	139484990	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaacgtgcatattgtttccActggcagcctgacagcctca	8	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139484990	T	T	139484990	1	4	61	0	1	0	0	0	0	0	0	0	5495	174	6	5		5	FAM135B	8	139484990	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	229684	139484990	6879032	3626	71871											
COL22A1	169044	broad.mit.edu	37	chr8	139629199	139629199	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctgtgtgtcccttgaaGccctagaaggaagagaatgg	13	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139629199	A	A	139629199	2	1	61	1	0	0	0	0	0	0	0	1	3713	958	34	4		4	COL22A1	8	139629199	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	144209	139629199	6734823	3627	71872											
COL22A1	169044	broad.mit.edu	37	chr8	139774752	139774752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaataaagaggttagtgacCacaggcagcagcccagcaca	11	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139774752	A	A	139774752	1	1	61	0	1	0	0	0	0	0	0	0	3713	609	21	2		2	COL22A1	8	139774752	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	145553	139774752	6589270	3628	71873											
COL22A1	169044	broad.mit.edu	37	chr8	139819870	139819870	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagactttatgacatttgcTcttatccatctaatttaaca	3	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139819870	A	A	139819870	1	1	61	0	1	0	0	0	0	0	0	0	3713	1566	54	5		5	COL22A1	8	139819870	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	45118	139819870	6544152	3629	71874											
COL22A1	169044	broad.mit.edu	37	chr8	139877741	139877741	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtatgcatgtgtatgtgTgtgtatgtttgtatgcctgt	12	3	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139877741	G	G	139877741	1	3	61	0	1	0	0	0	0	0	0	0	3713	1711	59	5		5	COL22A1	8	139877741	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	57871	139877741	6486281	3630	71875											
COL22A1	169044	broad.mit.edu	37	chr8	139885028	139885028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggaaacacatagccacCagcatcacggcagaccttag	8	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139885028	A	A	139885028	1	1	61	0	1	0	0	0	0	0	0	0	3713	609	21	2		2	COL22A1	8	139885028	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7287	139885028	6478994	3631	71876											
TRAPPC9	83696	broad.mit.edu	37	chr8	141033824	141033824	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcacggcgtgatatgtaaAgcccattcacttacgaccac	8	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141033824	T	T	141033824	1	4	61	0	1	0	0	0	0	0	0	0	16589	87	3	5		5	TRAPPC9	8	141033824	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1148796	141033824	5330198	3632	71877											
TRAPPC9	83696	broad.mit.edu	37	chr8	141359742	141359742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggagggagcggggaacAcggagtgggcaggagggcat	23	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141359742	T	T	141359742	1	4	61	0	1	0	0	0	0	0	0	0	16589	174	6	5		5	TRAPPC9	8	141359742	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	325918	141359742	5004280	3633	71878											
PTK2	5747	broad.mit.edu	37	chr8	141696760	141696760	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagacttccatcctccctgtCaatactgcctcgagagagtc	7	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141696760	A	A	141696760	3	1	61	1	0	0	0	0	1	0	0	0	12868	826	29	3	649	3	PTK2	8	141696760	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	337018	141696760	4667262	3634	71879											
DENND3	22898	broad.mit.edu	37	chr8	142162069	142162069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagaggtcacgggtaccGtgagaagtggctgttcactc	15	9	2	2	rs77041703	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142162069	T	T	142162069	1	4	61	0	1	0	0	0	0	0	0	0	4472	1160	40	3		3	DENND3	8	142162069	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	465309	142162069	4201953	3635	71880											
SLC45A4	57210	broad.mit.edu	37	chr8	142221580	142221580	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccccggaccagcctcctcCcagctttggtgtgcggtcgc	11	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142221580	G	G	142221580	3	3	61	1	0	0	0	0	1	0	0	0	14757	624	22	4	42	4	SLC45A4	8	142221580	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	59511	142221580	4142442	3636	71881											
TSNARE1	203062	broad.mit.edu	37	chr8	143412205	143412205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaccacactcccgcccCtgccccccaatgtgcaccac	8	21	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143412205	A	A	143412205	1	1	61	0	1	0	0	0	0	0	0	0	16755	696	24	2		2	TSNARE1	8	143412205	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1190625	143412205	2951817	3637	71882											
BAI1	575	broad.mit.edu	37	chr8	143561119	143561119	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaggagaccccagcgggaGaggtggctgctgtccggtgt	19	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143561119	T	T	143561119	4	4	61	1	0	0	0	0	0	1	0	0	1303	943	33	3	1822	3	BAI1	8	143561119	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	148914	143561119	2802903	3638	71883											
LYPD2	137797	broad.mit.edu	37	chr8	143833820	143833821	+	Frame_Shift_Del	DEL	CC	-	-													cccacacctcacccagctctCcgcaggcagccagcaccagc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143833821	-	-	143833820	7	5	61	1	0	1	0	1	0	0	0	0	9198	855	30	0	339	0	LYPD2	8	143833820	Frame_Shift_Del	DEL	CC	TCGA-17-Z031-01A-01W-0746-08	272701	143833820	2530202	3639	71884											
LYNX1	66004	broad.mit.edu	37	chr8	143846158	143846158	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcggtgttgctgaggacCcctgagtgggcaggagagaa	16	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143846158	A	A	143846158	2	1	61	1	0	0	0	0	0	0	0	1	9196	637	22	2		2	LYNX1	8	143846158	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12338	143846158	2517864	3640	71885											
CYP11B1	1584	broad.mit.edu	37	chr8	143955642	143955642	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaaccctggtcctagagGccctcgggagttccatttgt	12	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143955642	T	T	143955642	1	4	61	0	1	0	0	0	0	0	0	0	4178	1218	42	3		3	CYP11B1	8	143955642	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	109484	143955642	2408380	3641	71886											
CYP11B2	1585	broad.mit.edu	37	chr8	143994156	143994157	+	Intron	DNP	CA	AG	AG													accaatgtctgcggacggtgCagagcagggatcagggaatg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	143994157	AG	AG	143994156	1	1	61	0	1	0	0	0	0	0	0	0	4179	725	25	3		3	CYP11B2	8	143994156	Intron	DNP	CA	TCGA-17-Z031-01A-01W-0746-08	38514	143994156	2369866	3642	71887											
CYP11B2	1585	broad.mit.edu	37	chr8	143995867	143995867	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggggacagccctcagatcTtggtgctgggaagcatcctt	13	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143995867	C	C	143995867	1	2	61	0	1	0	0	0	0	0	0	0	4179	1624	56	5		5	CYP11B2	8	143995867	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1711	143995867	2368155	3643	71888											
CYP11B2	1585	broad.mit.edu	37	chr8	143996514	143996514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtccagggtcaggctcccCcgggcgttctgcagcacctt	12	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143996514	A	A	143996514	2	1	61	1	0	0	0	0	0	0	0	1	4179	610	22	2		2	CYP11B2	8	143996514	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	647	143996514	2367508	3644	71889											
EPPK1	83481	broad.mit.edu	37	chr8	144942206	144942206	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgctccagaagctgcaggTacgtgaggttctcgtgcgtg	15	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144942206	C	C	144942206	3	2	61	1	0	0	0	0	1	0	0	0	5232	1638	57	5	2050	5	EPPK1	8	144942206	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	945692	144942206	1421816	3645	71890											
PLEC	5339	broad.mit.edu	37	chr8	144991466	144991466	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatctcctcccactcgcactCctgctcggacagctccaggt	8	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144991466	G	G	144991466	3	3	61	1	0	0	0	0	1	0	0	0	12147	864	30	4	1124	4	PLEC	8	144991466	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	49260	144991466	1372556	3646	71891											
RPL8	6132	broad.mit.edu	37	chr8	146017270	146017270	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaccaccttggcgaggggCgcgccgcggcccgggtcgtg	18	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146017270	A	A	146017270	2	1	61	1	0	0	0	0	0	0	0	1	13713	755	27	3		3	RPL8	8	146017270	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1025804	146017270	346752	3647	71892											
FOXD4	2298	broad.mit.edu	37	chr9	116941	116941	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgataccgcagcagcgcCgacgcggccgacaggtgccc	14	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116941	T	T	116941	2	4	61	1	0	0	0	0	0	0	0	1	6057	639	23	4		4	FOXD4	9	116941	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08		116941	141096490	3648	71893											
DOCK8	81704	broad.mit.edu	37	chr9	340350	340350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggctcgggctgggcgtGgtggcttacaccataatccc	13	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	340350	A	A	340350	1	1	61	0	1	0	0	0	0	0	0	0	4733	1363	47	4		4	DOCK8	9	340350	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	223409	340350	140873081	3649	71894											
DOCK8	81704	broad.mit.edu	37	chr9	420997	420997	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaagtcctgcagaagtcaAgggatgtcaaggcccggctg	13	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	420997	C	C	420997	2	2	61	1	0	0	0	0	0	0	0	1	4733	63	3	5		5	DOCK8	9	420997	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	80647	420997	140792434	3650	71895											
KANK1	23189	broad.mit.edu	37	chr9	625042	625042	+	Intron	DEL	T	-	-													atggaagatgaaattgtgccTtgttcgatgccctggggtct					rs112783531		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	625042	-	-	625042	6	5	61	0	1	1	0	1	0	0	0	0	8046	1624	56	0		0	KANK1	9	625042	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	204045	625042	140588389	3651	71896											
DMRT3	58524	broad.mit.edu	37	chr9	990458	990458	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttctgtccagccgatcctCagtcacgggagcagagcgaa	11	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	990458	T	T	990458	3	4	61	1	0	0	0	0	1	0	0	0	4627	838	29	4	878	4	DMRT3	9	990458	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	365416	990458	140222973	3652	71897											
DMRT2	10655	broad.mit.edu	37	chr9	1053646	1053646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtttctagaagatttaCggacatcccgtccttccccc	8	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1053646	A	A	1053646	1	1	61	0	1	0	0	0	0	0	0	0	4626	551	19	3		3	DMRT2	9	1053646	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	63188	1053646	140159785	3653	71898											
DMRT2	10655	broad.mit.edu	37	chr9	1056572	1056572	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttctaatgtcagcgtgGccacaacttatagacagtat	7	9	3	1	rs142906421		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1056572	A	A	1056572	3	1	61	1	0	0	0	0	1	0	0	0	4626	1203	42	4	1052	4	DMRT2	9	1056572	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2926	1056572	140156859	3654	71899											
DMRT2	10655	broad.mit.edu	37	chr9	1057311	1057311	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctggattttctgcagtcTtagagcattatagccatttg	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1057311	G	G	1057311	1	3	61	0	1	0	0	0	0	0	0	0	4626	1624	56	5		5	DMRT2	9	1057311	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	739	1057311	140156120	3655	71900											
SMARCA2	6595	broad.mit.edu	37	chr9	2086930	2086930	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cactatgtggcccccagaagGatcctcttgactgggacccc	10	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2086930	C	C	2086930	3	2	61	1	0	0	0	0	1	0	0	0	14883	1165	41	4	2694	4	SMARCA2	9	2086930	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1029619	2086930	139126501	3656	71901											
SMARCA2	6595	broad.mit.edu	37	chr9	2115747	2115747	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacccttccatatttccCtctggggtggggtccggttt	11	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2115747	T	T	2115747	1	4	61	0	1	0	0	0	0	0	0	0	14883	696	24	4		4	SMARCA2	9	2115747	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28817	2115747	139097684	3657	71902											
KIAA0020	9933	broad.mit.edu	37	chr9	2811297	2811297	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcttactgacaccccacatCgtccaaaaacgaagtttttg	5	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2811297	G	G	2811297	1	3	61	0	1	0	0	0	0	0	0	0	8222	899	31	4		4	KIAA0020	9	2811297	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	695550	2811297	138402134	3658	71903											
GLIS3	169792	broad.mit.edu	37	chr9	3829224	3829224	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcggtcatgtgcttggtcaCgtccagcccaggtcggtcac	13	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3829224	G	G	3829224	1	3	61	0	1	0	0	0	0	0	0	0	6511	551	19	4		4	GLIS3	9	3829224	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1017927	3829224	137384207	3659	71904											
GLIS3	169792	broad.mit.edu	37	chr9	3937124	3937124	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatacggcttctcgccTgtgtggctccgcaagtggat	11	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3937124	A	A	3937124	2	1	61	1	0	0	0	0	0	0	0	1	6511	1567	55	5		5	GLIS3	9	3937124	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	107900	3937124	137276307	3660	71905											
RCL1	10171	broad.mit.edu	37	chr9	4826753	4826753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcatttcgagcactcttGgatgcccttgtcaggctttc	10	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4826753	T	T	4826753	1	4	61	0	1	0	0	0	0	0	0	0	13286	1363	47	2		2	RCL1	9	4826753	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	889629	4826753	136386678	3661	71906											
JAK2	3717	broad.mit.edu	37	chr9	5085254	5085254	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggaccagtggctaacctGagattcacatcagctgatgt	10	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5085254	T	T	5085254	1	4	61	0	1	0	0	0	0	0	0	0	8008	1305	45	3		3	JAK2	9	5085254	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	258501	5085254	136128177	3662	71907											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5534897	5534897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgatacatccccacacCgtgaaagagccactttgctg	7	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5534897	A	A	5534897	3	1	61	1	0	0	0	0	1	0	0	0	11712	652	23	1	214	1	PDCD1LG2	9	5534897	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	449643	5534897	135678534	3663	71908											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5563067	5563067	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcttcgctatgtggatttAtttagatttactttttgtcc	9	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5563067	G	G	5563067	1	3	61	0	1	0	0	0	0	0	0	0	11712	464	16	5		5	PDCD1LG2	9	5563067	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	28170	5563067	135650364	3664	71909											
UHRF2	115426	broad.mit.edu	37	chr9	6460548	6460548	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtctttggtaatcataaGccatatggttttctctctcc	7	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6460548	T	T	6460548	1	4	61	0	1	0	0	0	0	0	0	0	17096	986	34	3		3	UHRF2	9	6460548	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	897481	6460548	134752883	3665	71910											
UHRF2	115426	broad.mit.edu	37	chr9	6504600	6504600	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatactgttctagaattttcTgaaaaaattggaacaatctt	6	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6504600	A	A	6504600	3	1	61	1	0	0	0	0	1	0	0	0	17096	1580	55	5	2229	5	UHRF2	9	6504600	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	44052	6504600	134708831	3666	71911											
GLDC	2731	broad.mit.edu	37	chr9	6609620	6609620	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcccttgaaacaccctcAcccccacccccagccacatc	3	24	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6609620	C	C	6609620	1	2	61	0	1	0	0	0	0	0	0	0	6497	174	6	5		5	GLDC	9	6609620	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	105020	6609620	134603811	3667	71912											
GLDC	2731	broad.mit.edu	37	chr9	6639509	6639509	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgacaatgatgtggccaaGggcaacaccctgattcggcc	11	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6639509	A	A	6639509	1	1	61	0	1	0	0	0	0	0	0	0	6497	1015	35	4		4	GLDC	9	6639509	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29889	6639509	134573922	3668	71913											
KDM4C	23081	broad.mit.edu	37	chr9	6834586	6834586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagcaccagggcatgatGgtgggcatgggtcggaagga	17	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6834586	T	T	6834586	1	4	61	0	1	0	0	0	0	0	0	0	8200	1363	47	2		2	KDM4C	9	6834586	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	195077	6834586	134378845	3669	71914											
KDM4C	23081	broad.mit.edu	37	chr9	6915872	6915872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatggaaggacctatgctGgggcatgagaagctcgcaaa	13	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6915872	T	T	6915872	1	4	61	0	1	0	0	0	0	0	0	0	8200	1363	47	2		2	KDM4C	9	6915872	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	81286	6915872	134297559	3670	71915											
KDM4C	23081	broad.mit.edu	37	chr9	6918306	6918306	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttaggttaattttcttagGataacggcctccacctgcat	7	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6918306	T	T	6918306	1	4	61	0	1	0	0	0	0	0	0	0	8200	1189	41	3		3	KDM4C	9	6918306	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2434	6918306	134295125	3671	71916											
PTPRD	5789	broad.mit.edu	37	chr9	8317934	8317934	+	Frame_Shift_Del	DEL	A	-	-													gcggcacgataggaaaactgAtattgatcctgcaggagaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8317934	-	-	8317934	7	5	61	1	0	1	0	1	0	0	0	0	12907	340	12	0	63	0	PTPRD	9	8317934	Frame_Shift_Del	DEL	A	TCGA-17-Z031-01A-01W-0746-08	1399628	8317934	132895497	3672	71917											
PTPRD	5789	broad.mit.edu	37	chr9	8337795	8337795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccttttctttatcaccaGgaatagttggtgagtttact	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8337795	T	T	8337795	1	4	61	0	1	0	0	0	0	0	0	0	12907	1015	35	2		2	PTPRD	9	8337795	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19861	8337795	132875636	3673	71918											
PTPRD	5789	broad.mit.edu	37	chr9	8340502	8340502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgaaaagaatgtgttaaAgtatttagagaacatgcaaa	9	2	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8340502	T	T	8340502	1	4	61	0	1	0	0	0	0	0	0	0	12907	87	3	5		5	PTPRD	9	8340502	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2707	8340502	132872929	3674	71919											
PTPRD	5789	broad.mit.edu	37	chr9	8346978	8346978	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatgaaaaaggcattaaaTtttgggtgaaatacatgaac	9	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8346978	G	G	8346978	1	3	61	0	1	0	0	0	0	0	0	0	12907	1508	52	5		5	PTPRD	9	8346978	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6476	8346978	132866453	3675	71920											
PTPRD	5789	broad.mit.edu	37	chr9	8370814	8370814	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgatttatagggccaTgcaacatggggaacataatg	11	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8370814	A	A	8370814	1	1	61	0	1	0	0	0	0	0	0	0	12907	1479	51	5		5	PTPRD	9	8370814	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23836	8370814	132842617	3676	71921											
PTPRD	5789	broad.mit.edu	37	chr9	8470875	8470875	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagcactgaaccatccaacCagctaggtatggagaagcca	9	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8470875	G	G	8470875	1	3	61	0	1	0	0	0	0	0	0	0	12907	609	21	4		4	PTPRD	9	8470875	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	100061	8470875	132742556	3677	71922											
PTPRD	5789	broad.mit.edu	37	chr9	8484156	8484156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtacttcaggcagttgcaCagtaatcatgccatccaagt	9	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8484156	A	A	8484156	3	1	61	1	0	0	0	0	1	0	0	0	12907	478	17	3	2495	3	PTPRD	9	8484156	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13281	8484156	132729275	3678	71923											
PTPRD	5789	broad.mit.edu	37	chr9	8485850	8485850	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacgtacttttacatcgtaTgtggtatctggttttaagcc	9	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8485850	C	C	8485850	2	2	61	1	0	0	0	0	0	0	0	1	12907	1451	51	5		5	PTPRD	9	8485850	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1694	8485850	132727581	3679	71924											
PTPRD	5789	broad.mit.edu	37	chr9	8494004	8494007	+	Intron	DEL	ACAG	-	-													acacagacacacacagacacAcagacacacacacacacaca					rs34072641		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8494007	-	-	8494004	6	5	61	0	1	1	0	1	0	0	0	0	12907	174	6	0		0	PTPRD	9	8494004	Intron	DEL	ACAG	TCGA-17-Z031-01A-01W-0746-08	8154	8494004	132719427	3680	71925											
PTPRD	5789	broad.mit.edu	37	chr9	8499814	8499814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgagttgacagcctctacctCgactttgcgaggaggaccac	11	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8499814	G	G	8499814	3	3	61	1	0	0	0	0	1	0	0	0	12907	893	31	4	3739	4	PTPRD	9	8499814	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5810	8499814	132713617	3681	71926											
PTPRD	5789	broad.mit.edu	37	chr9	8499918	8499918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttctgcattttctttaCttaggtttctctttcaaaaa	3	8	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8499918	A	A	8499918	1	1	61	0	1	0	0	0	0	0	0	0	12907	580	20	3		3	PTPRD	9	8499918	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104	8499918	132713513	3682	71927											
PTPRD	5789	broad.mit.edu	37	chr9	8500792	8500792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacacggacaagctctcaGggccagggccgacatctgta	11	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8500792	T	T	8500792	3	4	61	1	0	0	0	0	1	0	0	0	12907	1000	35	2	3808	2	PTPRD	9	8500792	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	874	8500792	132712639	3683	71928											
PTPRD	5789	broad.mit.edu	37	chr9	8636910	8636910	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagactattatcctactaccGctgctctccccaccatcctc	3	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8636910	C	C	8636910	1	2	61	0	1	0	0	0	0	0	0	0	12907	1102	38	4		4	PTPRD	9	8636910	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	136118	8636910	132576521	3684	71929											
PTPRD	5789	broad.mit.edu	37	chr9	8990542	8990542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctcctgtccctggccCctcattctgccccatggcaa	7	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8990542	A	A	8990542	1	1	61	0	1	0	0	0	0	0	0	0	12907	638	22	2		2	PTPRD	9	8990542	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	353632	8990542	132222889	3685	71930											
PTPRD	5789	broad.mit.edu	37	chr9	8998117	8998117	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgatgtacaagctgcagcAtgttagctggaagatttagc	12	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8998117	T	T	8998117	1	4	61	0	1	0	0	0	0	0	0	0	12907	232	8	5		5	PTPRD	9	8998117	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	7575	8998117	132215314	3686	71931											
PTPRD	5789	broad.mit.edu	37	chr9	9021412	9021412	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgcagtttttgccattaaAagtaatggcattagtacttg	8	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9021412	C	C	9021412	1	2	61	0	1	0	0	0	0	0	0	0	12907	29	1	5		5	PTPRD	9	9021412	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	23295	9021412	132192019	3687	71932											
PTPRD	5789	broad.mit.edu	37	chr9	9023191	9023191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaataacaccatcacaaCagtaagtgagacatcatagc	5	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9023191	A	A	9023191	1	1	61	0	1	0	0	0	0	0	0	0	12907	493	17	3		3	PTPRD	9	9023191	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1779	9023191	132190240	3688	71933											
PTPRD	5789	broad.mit.edu	37	chr9	9542256	9542256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttatgccaataaattggGtaatttaggtgacaaacagg	9	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9542256	T	T	9542256	1	4	61	0	1	0	0	0	0	0	0	0	12907	1276	44	3		3	PTPRD	9	9542256	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	519065	9542256	131671175	3689	71934											
PTPRD	5789	broad.mit.edu	37	chr9	10513897	10513897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagataccaggatgagcCatggtattctcagggttcca	11	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10513897	A	A	10513897	1	1	61	0	1	0	0	0	0	0	0	0	12907	609	21	2		2	PTPRD	9	10513897	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	971641	10513897	130699534	3690	71935											
MPDZ	8777	broad.mit.edu	37	chr9	13133860	13133860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcacatttttaaatgaaCtgaggtccacagctgcatca	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13133860	A	A	13133860	3	1	61	1	0	0	0	0	1	0	0	0	9816	565	20	3	1758	3	MPDZ	9	13133860	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2619963	13133860	128079571	3691	71936											
MPDZ	8777	broad.mit.edu	37	chr9	13175958	13175958	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaacatcacgcatgttctCtaattgattgtgctttattt	5	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13175958	G	G	13175958	1	3	61	0	1	0	0	0	0	0	0	0	9816	928	32	4		4	MPDZ	9	13175958	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42098	13175958	128037473	3692	71937											
NFIB	4781	broad.mit.edu	37	chr9	14088355	14088355	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagagaggcagcagggaggGaagaaaaaagaaaaaaatac	15	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14088355	T	T	14088355	1	4	61	0	1	0	0	0	0	0	0	0	10466	1189	41	3		3	NFIB	9	14088355	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	912397	14088355	127125076	3693	71938											
FREM1	158326	broad.mit.edu	37	chr9	14747130	14747130	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcacctcctttgggtcttcAtttgttgggaagcatttgtg	10	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14747130	T	T	14747130	1	4	61	0	1	0	0	0	0	0	0	0	6104	232	8	5		5	FREM1	9	14747130	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	658775	14747130	126466301	3694	71939											
FREM1	158326	broad.mit.edu	37	chr9	14775956	14775956	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgggtgaaattgtgttgaAgtagccctgtcccccacagg	13	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14775956	C	C	14775956	3	2	61	1	0	0	0	0	1	0	0	0	6104	72	3	5	1903	5	FREM1	9	14775956	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	28826	14775956	126437475	3695	71940											
FREM1	158326	broad.mit.edu	37	chr9	14812570	14812570	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaggtctgtgtggtagcGtcaggaacaaagcaagtaat	14	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14812570	A	A	14812570	1	1	61	0	1	0	0	0	0	0	0	0	6104	1160	40	4		4	FREM1	9	14812570	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36614	14812570	126400861	3696	71941											
FREM1	158326	broad.mit.edu	37	chr9	14842201	14842201	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttacttcagaaacttgatGttcaccttaggacaaactcg	6	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14842201	C	C	14842201	1	2	61	0	1	0	0	0	0	0	0	0	6104	1392	48	4		4	FREM1	9	14842201	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29631	14842201	126371230	3697	71942											
FREM1	158326	broad.mit.edu	37	chr9	14851810	14851810	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggttcttgtttaattgttCcaaaaaggggaccagaaaac	10	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14851810	A	A	14851810	1	1	61	0	1	0	0	0	0	0	0	0	6104	870	30	3		3	FREM1	9	14851810	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9609	14851810	126361621	3698	71943											
FREM1	158326	broad.mit.edu	37	chr9	14859441	14859441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggttccaggagatagaccCacaggataaaagtttctatg	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14859441	A	A	14859441	3	1	61	1	0	0	0	0	1	0	0	0	6104	595	21	2	6354	2	FREM1	9	14859441	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7631	14859441	126353990	3699	71944											
TTC39B	158219	broad.mit.edu	37	chr9	15185427	15185427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagaaccccagcccagcCccagagaaaggtcatggcaa	11	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15185427	A	A	15185427	1	1	61	0	1	0	0	0	0	0	0	0	16834	638	22	2		2	TTC39B	9	15185427	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	325986	15185427	126028004	3700	71945											
BNC2	54796	broad.mit.edu	37	chr9	16436590	16436590	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacccattgggggtcggccAgggcttgtgagtgccagatt	15	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16436590	T	T	16436590	2	4	61	1	0	0	0	0	0	0	0	1	1481	175	7	5		5	BNC2	9	16436590	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1251163	16436590	124776841	3701	71946											
BNC2	54796	broad.mit.edu	37	chr9	16451689	16451689	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaattaacctctccatgAaatgtttcctctcctatctt	3	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16451689	T	T	16451689	1	4	61	0	1	0	0	0	0	0	0	0	1481	261	9	5		5	BNC2	9	16451689	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	15099	16451689	124761742	3702	71947											
BNC2	54796	broad.mit.edu	37	chr9	16789457	16789457	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgatctggcccatatcTtaccctacacacttcaacaa	3	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16789457	G	G	16789457	1	3	61	0	1	0	0	0	0	0	0	0	1481	1624	56	5		5	BNC2	9	16789457	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	337768	16789457	124423974	3703	71948											
CNTLN	54875	broad.mit.edu	37	chr9	17463043	17463043	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatttctatccattgtattTggtgccacctagtggcaacc	8	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17463043	G	G	17463043	1	3	61	0	1	0	0	0	0	0	0	0	3671	1827	63	5		5	CNTLN	9	17463043	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	673586	17463043	123750388	3704	71949											
CNTLN	54875	broad.mit.edu	37	chr9	17493128	17493129	+	Intron	INS	-	A	A													aatttcagtttggaaagatgINSaaaaatcctagagatagagg					rs142848712	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17493129	A	A	17493128	6	5	61	0	1	1	1	0	0	0	0	0	3671	1305	45	0		0	CNTLN	9	17493128	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	30085	17493128	123720303	3705	71950											
SH3GL2	6456	broad.mit.edu	37	chr9	17791292	17791292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtaccacaagcaggcaGtccagatcctgcagcaagtc	11	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17791292	T	T	17791292	3	4	61	1	0	0	0	0	1	0	0	0	14364	1029	36	3	714	3	SH3GL2	9	17791292	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	298164	17791292	123422139	3706	71951											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18474374	18474375	+	Intron	DEL	TG	-	-													tgtgtgtgtgtatgtgtgttTgtgtgtgtgtgtgtgtcttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18474375	-	-	18474374	6	5	61	0	1	1	0	1	0	0	0	0	274	1827	63	0		0	ADAMTSL1	9	18474374	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	683082	18474374	122739057	3707	71952											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18657596	18657596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagggaccagaaagcaccGcactgtcacattacttctac	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18657596	T	T	18657596	1	4	61	0	1	0	0	0	0	0	0	0	274	1102	38	3		3	ADAMTSL1	9	18657596	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	183222	18657596	122555835	3708	71953											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18706942	18706942	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggggaaattcctgagttcaAcccagacgagacagatgggc	13	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18706942	G	G	18706942	3	3	61	1	0	0	0	0	1	0	0	0	274	43	2	5	1830	5	ADAMTSL1	9	18706942	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	49346	18706942	122506489	3709	71954											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18776831	18776831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatcgcggccgccaggaaGgtctacatacagactcgcag	11	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18776831	T	T	18776831	3	4	61	1	0	0	0	0	1	0	0	0	274	991	35	2	2682	2	ADAMTSL1	9	18776831	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69889	18776831	122436600	3710	71955											
FAM154A	158297	broad.mit.edu	37	chr9	19027263	19027263	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgtgattggattggtggAtgttgaaaagctaaagccag	13	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19027263	G	G	19027263	1	3	61	0	1	0	0	0	0	0	0	0	5509	348	12	5		5	FAM154A	9	19027263	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	250432	19027263	122186168	3711	71956											
HAUS6	54801	broad.mit.edu	37	chr9	19080548	19080548	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggtagtgaaggtctacCgtcaatcttgcttgatcagc	10	9	5	2	rs139689694	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19080548	A	A	19080548	2	1	61	1	0	0	0	0	0	0	0	1	7036	639	23	1		1	HAUS6	9	19080548	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53285	19080548	122132883	3712	71957											
ACER2	340485	broad.mit.edu	37	chr9	19424711	19424711	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctaggaattggatccgtCtacttccatgcaacccttag	7	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19424711	A	A	19424711	2	1	61	1	0	0	0	0	0	0	0	1	139	900	32	3		3	ACER2	9	19424711	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	344163	19424711	121788720	3713	71958											
SLC24A2	25769	broad.mit.edu	37	chr9	19612139	19612139	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgcaaagcacagtaccTggtacctagtaagtgctcaa	9	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19612139	G	G	19612139	1	3	61	0	1	0	0	0	0	0	0	0	14580	1595	55	5		5	SLC24A2	9	19612139	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	187428	19612139	121601292	3714	71959											
SLC24A2	25769	broad.mit.edu	37	chr9	19665312	19665312	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaagaaactgatgactttGagaggtgctgagaaggcaga	15	4	0	7			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19665312	T	T	19665312	1	4	61	0	1	0	0	0	0	0	0	0	14580	1305	45	3		3	SLC24A2	9	19665312	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	53173	19665312	121548119	3715	71960											
SLC24A2	25769	broad.mit.edu	37	chr9	19705702	19705702	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatgtacccagtagtcattCaggagcaggttgttcagttt	10	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19705702	A	A	19705702	1	1	61	0	1	0	0	0	0	0	0	0	14580	841	29	3		3	SLC24A2	9	19705702	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40390	19705702	121507729	3716	71961											
MLLT3	4300	broad.mit.edu	37	chr9	20543953	20543954	+	Intron	INS	-	AT	AT													gtgaagcacaataaaacaagINSattcccctacaacaggggaa					rs141404437	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	20543954	AT	AT	20543953	6	5	61	0	1	1	1	0	0	0	0	0	9721	957	33	0		0	MLLT3	9	20543953	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	838251	20543953	120669478	3717	71962											
KIAA1797	54914	broad.mit.edu	37	chr9	20762813	20762814	+	Intron	INS	-	CC	CC													aggaaaattttcagcccttgINScccctccttcccaccctctg					rs142699908	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	20762814	CC	CC	20762813	6	5	61	0	1	1	1	0	0	0	0	0	8328	1334	46	0		0	KIAA1797	9	20762813	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	218860	20762813	120450618	3718	71963											
KIAA1797	54914	broad.mit.edu	37	chr9	20912888	20912888	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactaggagagctggagttGcagttaaaacatggaaaaga	13	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20912888	A	A	20912888	2	1	61	1	0	0	0	0	0	0	0	1	8328	1310	46	4		4	KIAA1797	9	20912888	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	150075	20912888	120300543	3719	71964											
KIAA1797	54914	broad.mit.edu	37	chr9	20931704	20931704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtaattgcagcattttGggaggccaaggcgggcagat	14	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20931704	T	T	20931704	1	4	61	0	1	0	0	0	0	0	0	0	8328	1363	47	2		2	KIAA1797	9	20931704	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18816	20931704	120281727	3720	71965											
PTPLAD2	401494	broad.mit.edu	37	chr9	21020233	21020234	+	Intron	DEL	AC	-	-													gtgcaggagtgtttattatgAcacagagggaaggatgtata					rs139542870		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21020234	-	-	21020233	6	5	61	0	1	1	0	1	0	0	0	0	12882	290	10	0		0	PTPLAD2	9	21020233	Intron	DEL	AC	TCGA-17-Z031-01A-01W-0746-08	88529	21020233	120193198	3721	71966											
IFNA7	3444	broad.mit.edu	37	chr9	21202191	21202191	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgcaaatatcactaggctAcctgaggtgggtaacttgaa	10	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21202191	T	T	21202191	1	4	61	0	1	0	0	0	0	0	0	0	7612	406	14	5		5	IFNA7	9	21202191	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	181958	21202191	120011240	3722	71967											
ELAVL2	1993	broad.mit.edu	37	chr9	23762137	23762137	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcttgctgtcttctgtgttCccagagtcaactggtgacga	11	10	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23762137	A	A	23762137	2	1	61	1	0	0	0	0	0	0	0	1	5092	842	30	3		3	ELAVL2	9	23762137	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2559946	23762137	117451294	3723	71968											
IFT74	80173	broad.mit.edu	37	chr9	26990194	26990194	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttactgaaagacaagcGtaagtatagctaatttaaaa	6	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26990194	T	T	26990194	5	4	61	1	0	0	0	0	0	0	1	0	7633	1159	40	3	614	3	IFT74	9	26990194	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3228057	26990194	114223237	3724	71969											
IFT74	80173	broad.mit.edu	37	chr9	27055706	27055706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaaattaagcaaatgaCaactgatctggagatatata	7	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27055706	A	A	27055706	3	1	61	1	0	0	0	0	1	0	0	0	7633	478	17	3	1564	3	IFT74	9	27055706	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	65512	27055706	114157725	3725	71970											
TEK	7010	broad.mit.edu	37	chr9	27133513	27133513	+	Intron	DEL	C	-	-													ctcctttgttatgtcagtgaCcatatgatgcatccaacctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27133513	-	-	27133513	6	5	61	0	1	1	0	1	0	0	0	0	15873	522	18	0		0	TEK	9	27133513	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	77807	27133513	114079918	3726	71971											
TEK	7010	broad.mit.edu	37	chr9	27148053	27148055	+	Intron	DEL	TTA	-	-													agattgctatgaggattgagTtattatgtgttgacacactt					rs143616982		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27148055	-	-	27148053	6	5	61	0	1	1	0	1	0	0	0	0	15873	1740	60	0		0	TEK	9	27148053	Intron	DEL	TTA	TCGA-17-Z031-01A-01W-0746-08	14540	27148053	114065378	3727	71972											
TEK	7010	broad.mit.edu	37	chr9	27208971	27208971	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtcaatagtgccaaggcCgagaaactctactttagagt	10	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27208971	T	T	27208971	1	4	61	0	1	0	0	0	0	0	0	0	15873	667	23	4		4	TEK	9	27208971	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60918	27208971	114004460	3728	71973											
TEK	7010	broad.mit.edu	37	chr9	27220023	27220023	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcatgccagagaggacttAgagtggcactgtttgtcttc	11	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27220023	T	T	27220023	1	4	61	0	1	0	0	0	0	0	0	0	15873	435	15	5		5	TEK	9	27220023	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11052	27220023	113993408	3729	71974											
C9orf11	54586	broad.mit.edu	37	chr9	27286203	27286203	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgcagaggtctgcagacTtacctcagatgcctcagttt	10	11	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27286203	C	C	27286203	1	2	61	0	1	0	0	0	0	0	0	0	2474	1624	56	5		5	C9orf11	9	27286203	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	66180	27286203	113927228	3730	71975											
MOBKL2B	79817	broad.mit.edu	37	chr9	27378419	27378419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggaggcaaagctggccCtgatcccatctagttccctc	9	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27378419	A	A	27378419	1	1	61	0	1	0	0	0	0	0	0	0	9779	696	24	2		2	MOBKL2B	9	27378419	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	92216	27378419	113835012	3731	71976											
MOBKL2B	79817	broad.mit.edu	37	chr9	27455253	27455253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgagatcatcctgccacCgatactcatatttggggccc	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27455253	A	A	27455253	3	1	61	1	0	0	0	0	1	0	0	0	9779	652	23	1	366	1	MOBKL2B	9	27455253	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76834	27455253	113758178	3732	71977											
LINGO2	158038	broad.mit.edu	37	chr9	27950844	27950844	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttgggcataaacctgatgGacgaccctcttagtaacagg	10	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27950844	T	T	27950844	1	4	61	0	1	0	0	0	0	0	0	0	8888	1189	41	3		3	LINGO2	9	27950844	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	495591	27950844	113262587	3733	71978											
LINGO2	158038	broad.mit.edu	37	chr9	27982522	27982522	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttcacatgcattaactcAattcccttaataaccatata	1	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27982522	T	T	27982522	1	4	61	0	1	0	0	0	0	0	0	0	8888	145	5	5		5	LINGO2	9	27982522	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	31678	27982522	113230909	3734	71979											
LINGO2	158038	broad.mit.edu	37	chr9	27990784	27990784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatatactacatcatctctGcctagcaggcatcaagggct	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27990784	T	T	27990784	1	4	61	0	1	0	0	0	0	0	0	0	8888	1334	46	3		3	LINGO2	9	27990784	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8262	27990784	113222647	3735	71980											
LINGO2	158038	broad.mit.edu	37	chr9	27995784	27995784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatggggcaaaattgaaagCctttaaaggtttggaacaag	12	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27995784	A	A	27995784	1	1	61	0	1	0	0	0	0	0	0	0	8888	754	26	3		3	LINGO2	9	27995784	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5000	27995784	113217647	3736	71981											
LINGO2	158038	broad.mit.edu	37	chr9	27999869	27999869	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccattaaaagtaatggcaAaaaccacaatcacttttgca	5	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27999869	G	G	27999869	1	3	61	0	1	0	0	0	0	0	0	0	8888	29	1	5		5	LINGO2	9	27999869	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4085	27999869	113213562	3737	71982											
LINGO2	158038	broad.mit.edu	37	chr9	28149192	28149192	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagctgcttaggaggagAaagaagagatggtagggcag	18	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28149192	G	G	28149192	1	3	61	0	1	0	0	0	0	0	0	0	8888	261	9	5		5	LINGO2	9	28149192	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	149323	28149192	113064239	3738	71983											
LINGO2	158038	broad.mit.edu	37	chr9	28641461	28641461	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccccaagaaagtcactagTgaaaggaaacattcacatag	9	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28641461	C	C	28641461	1	2	61	0	1	0	0	0	0	0	0	0	8888	1711	59	5		5	LINGO2	9	28641461	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	492269	28641461	112571970	3739	71984											
DDX58	23586	broad.mit.edu	37	chr9	32481382	32481382	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggctttacaaatcctgcTctcttcatctttgtctggca	7	12	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32481382	A	A	32481382	3	1	61	1	0	0	0	0	1	0	0	0	4408	1551	54	5	1215	5	DDX58	9	32481382	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3839921	32481382	108732049	3740	71985											
DDX58	23586	broad.mit.edu	37	chr9	32492368	32492368	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgagtcctaagtagagctgtGaggagggtacagtgtcttac	14	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32492368	T	T	32492368	1	4	61	0	1	0	0	0	0	0	0	0	4408	1305	45	3		3	DDX58	9	32492368	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10986	32492368	108721063	3741	71986											
TAF1L	138474	broad.mit.edu	37	chr9	32631925	32631925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttctcatcttttgtaGtccgtatgcgcacataggca	8	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32631925	T	T	32631925	3	4	61	1	0	0	0	0	1	0	0	0	15642	1029	36	3	1831	3	TAF1L	9	32631925	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	139557	32631925	108581506	3742	71987											
B4GALT1	2683	broad.mit.edu	37	chr9	33135908	33135909	+	Intron	DEL	TA	-	-													agtgtgtgtgtgtgtgtgtgTatgtgtgtgtgtgtgtgtgt					rs34931533		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33135909	-	-	33135908	6	5	61	0	1	1	0	1	0	0	0	0	1275	1653	57	0		0	B4GALT1	9	33135908	Intron	DEL	TA	TCGA-17-Z031-01A-01W-0746-08	503983	33135908	108077523	3743	71988											
BAG1	573	broad.mit.edu	37	chr9	33257016	33257016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccatagccctggcaggcCaggccacatctcagatccac	8	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33257016	A	A	33257016	1	1	61	0	1	0	0	0	0	0	0	0	1291	609	21	2		2	BAG1	9	33257016	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	121108	33257016	107956415	3744	71989											
NFX1	4799	broad.mit.edu	37	chr9	33364822	33364822	+	Intron	DEL	A	-	-													tctctaaggccagcttgatgAaaaaaaaaaagcaatcaagt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33364822	-	-	33364822	6	5	61	0	1	1	0	1	0	0	0	0	10482	261	9	0		0	NFX1	9	33364822	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	107806	33364822	107848609	3745	71990											
AQP7	364	broad.mit.edu	37	chr9	33385507	33385507	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtactggcctggggaaatgtTgggactcactcctgctcccc	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33385507	A	A	33385507	1	1	61	0	1	0	0	0	0	0	0	0	833	1827	63	5		5	AQP7	9	33385507	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	20685	33385507	107827924	3746	71991											
KIF24	347240	broad.mit.edu	37	chr9	34310921	34310921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtactgggaatcatctgGtagcatgtgttctagcactt	11	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34310921	T	T	34310921	3	4	61	1	0	0	0	0	1	0	0	0	8362	1261	44	3	3730	3	KIF24	9	34310921	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	925414	34310921	106902510	3747	71992											
DNAI1	27019	broad.mit.edu	37	chr9	34483302	34483302	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggaggtgccgagagcaagcGagggctctgaggactgccag	19	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34483302	A	A	34483302	1	1	61	0	1	0	0	0	0	0	0	0	4649	1073	37	4		4	DNAI1	9	34483302	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	172381	34483302	106730129	3748	71993											
CNTFR	1271	broad.mit.edu	37	chr9	34556335	34556335	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggtcaggccaggtcgagGgggtctgccacgtcacctcc	15	14	3	0	rs145978650		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34556335	A	A	34556335	3	1	61	1	0	0	0	0	1	0	0	0	3670	1232	43	4	448	4	CNTFR	9	34556335	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	73033	34556335	106657096	3749	71994											
CNTFR	1271	broad.mit.edu	37	chr9	34580072	34580072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggagcccattctttccCcgaccactatccttctcttc	6	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34580072	A	A	34580072	1	1	61	0	1	0	0	0	0	0	0	0	3670	638	22	2		2	CNTFR	9	34580072	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	23737	34580072	106633359	3750	71995											
ARID3C	138715	broad.mit.edu	37	chr9	34627681	34627681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagggccggacattgaggGcataggtcctacctgcttga	14	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34627681	T	T	34627681	1	4	61	0	1	0	0	0	0	0	0	0	920	1218	42	3		3	ARID3C	9	34627681	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47609	34627681	106585750	3751	71996											
KIAA1045	23349	broad.mit.edu	37	chr9	34971162	34971162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgatccttaacatgtgctGtctccacccccaccatgttc	5	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34971162	T	T	34971162	1	4	61	0	1	0	0	0	0	0	0	0	8277	1392	48	3		3	KIAA1045	9	34971162	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	343481	34971162	106242269	3752	71997											
KIAA1045	23349	broad.mit.edu	37	chr9	34971409	34971409	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttccatccgacgcacaggTgagctgccagggtcccgccg	12	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34971409	A	A	34971409	2	1	61	1	0	0	0	0	0	0	0	1	8277	1683	59	5		5	KIAA1045	9	34971409	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	247	34971409	106242022	3753	71998											
KIAA1045	23349	broad.mit.edu	37	chr9	34971551	34971551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcggctccgagatgggCgcggcgtggagcctgaggag	22	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34971551	A	A	34971551	3	1	61	1	0	0	0	0	1	0	0	0	8277	768	27	3	258	3	KIAA1045	9	34971551	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	142	34971551	106241880	3754	71999											
KIAA1045	23349	broad.mit.edu	37	chr9	34977564	34977564	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atcagccatgtgggtcccatCgcagatagcagcccagccag	11	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34977564	G	G	34977564	3	3	61	1	0	0	0	0	1	0	0	0	8277	874	31	4	1054	4	KIAA1045	9	34977564	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6013	34977564	106235867	3755	72000											
FANCG	2189	broad.mit.edu	37	chr9	35076537	35076537	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtagtaattctacctcaAtgagaaactgcggggctttg	11	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35076537	G	G	35076537	3	3	61	1	0	0	0	0	1	0	0	0	5725	101	4	5	928	5	FANCG	9	35076537	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	98973	35076537	106136894	3756	72001											
KIAA1539	80256	broad.mit.edu	37	chr9	35105288	35105288	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagttcgtaggggagccctGtgtccagctccaggctccgg	15	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35105288	A	A	35105288	3	1	61	1	0	0	0	0	1	0	0	0	8312	1377	48	4	73	4	KIAA1539	9	35105288	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	28751	35105288	106108143	3757	72002											
UNC13B	10497	broad.mit.edu	37	chr9	35370197	35370197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccgtcctaaaagcacatGgtagaggtcagttcatcttc	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35370197	T	T	35370197	1	4	61	0	1	0	0	0	0	0	0	0	17111	1363	47	2		2	UNC13B	9	35370197	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	264909	35370197	105843234	3758	72003											
UNC13B	10497	broad.mit.edu	37	chr9	35381256	35381256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatcagaaagcagtgctgGgagaggcctttggccataag	16	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35381256	T	T	35381256	1	4	61	0	1	0	0	0	0	0	0	0	17111	1247	43	2		2	UNC13B	9	35381256	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11059	35381256	105832175	3759	72004											
UNC13B	10497	broad.mit.edu	37	chr9	35403605	35403606	+	Intron	INS	-	G	G													acattccacttgtaagttacINSgggggggacatacaggactc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35403606	G	G	35403605	6	5	61	0	1	1	1	0	0	0	0	0	17111	551	19	0		0	UNC13B	9	35403605	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	22349	35403605	105809826	3760	72005											
CA9	768	broad.mit.edu	37	chr9	35680958	35680958	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctttcctgttgtgtacacAcagaaggggaaccaaagggg	13	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35680958	G	G	35680958	1	3	61	0	1	0	0	0	0	0	0	0	2550	174	6	5		5	CA9	9	35680958	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	277353	35680958	105532473	3761	72006											
TPM2	7169	broad.mit.edu	37	chr9	35689309	35689309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccaggctgggagggggCccaggcccagaatggagacg	18	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35689309	A	A	35689309	1	1	61	0	1	0	0	0	0	0	0	0	16530	754	26	3		3	TPM2	9	35689309	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8351	35689309	105524122	3762	72007											
TLN1	7094	broad.mit.edu	37	chr9	35711511	35711511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggaagggagccaggagCaagtcaggactggtcactca	17	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35711511	A	A	35711511	1	1	61	0	1	0	0	0	0	0	0	0	16070	725	25	3		3	TLN1	9	35711511	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22202	35711511	105501920	3763	72008											
RECK	8434	broad.mit.edu	37	chr9	36120753	36120753	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtaaattgctttatattcaGatgctattgaaatcttattg	7	4	2	2	rs61695203		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36120753	T	T	36120753	1	4	61	0	1	0	0	0	0	0	0	0	13308	957	33	3		3	RECK	9	36120753	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	409242	36120753	105092678	3764	72009											
CLTA	1211	broad.mit.edu	37	chr9	36197460	36197460	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtagctcaaggttcatacAgcatatgatgctgtattcta	8	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36197460	T	T	36197460	1	4	61	0	1	0	0	0	0	0	0	0	3596	203	7	5		5	CLTA	9	36197460	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	76707	36197460	105015971	3765	72010											
ZCCHC7	84186	broad.mit.edu	37	chr9	37205284	37205284	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacagtacctattcccttgAtgtctgcagtatcacctttc	6	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37205284	G	G	37205284	1	3	61	0	1	0	0	0	0	0	0	0	17719	348	12	5		5	ZCCHC7	9	37205284	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1007824	37205284	104008147	3766	72011											
ZCCHC7	84186	broad.mit.edu	37	chr9	37346671	37346671	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacaaagcgagacgctgtctCaaagaaaaaacaaaattagg	9	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37346671	A	A	37346671	1	1	61	0	1	0	0	0	0	0	0	0	17719	841	29	3		3	ZCCHC7	9	37346671	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	141387	37346671	103866760	3767	72012											
GRHPR	9380	broad.mit.edu	37	chr9	37432265	37432265	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caaagggacacaccagggatCgtaaatgtttatgttgtcag	11	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37432265	G	G	37432265	1	3	61	0	1	0	0	0	0	0	0	0	6832	899	31	4		4	GRHPR	9	37432265	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85594	37432265	103781166	3768	72013											
FRMPD1	22844	broad.mit.edu	37	chr9	37691897	37691897	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggtgacagagcgagactCcatctcaaaaaagaaaagaa	10	8	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37691897	A	A	37691897	1	1	61	0	1	0	0	0	0	0	0	0	6117	870	30	3		3	FRMPD1	9	37691897	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	259632	37691897	103521534	3769	72014											
FRMPD1	22844	broad.mit.edu	37	chr9	37692668	37692668	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggagaccagtttattccaGacacggaaagcacatagaat	9	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37692668	T	T	37692668	3	4	61	1	0	0	0	0	1	0	0	0	6117	933	33	3	32	3	FRMPD1	9	37692668	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	771	37692668	103520763	3770	72015											
SHB	6461	broad.mit.edu	37	chr9	37974622	37974623	+	Missense_Mutation	DNP	CC	AG	AG													gggtcagggctccttacctgCcagggctgggatggtgaccc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	37974623	AG	AG	37974622	3	1	61	1	0	0	0	0	1	0	0	0	14381	739	26	3	494	3	SHB	9	37974622	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	281954	37974622	103238809	3771	72016											
CNTNAP3	79937	broad.mit.edu	37	chr9	39086799	39086799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaatcaaaggtaaatgCatcaggattttgatgtctat	7	4	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39086799	A	A	39086799	3	1	61	1	0	0	0	0	1	0	0	0	3680	710	25	3	618	3	CNTNAP3	9	39086799	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1112177	39086799	102126632	3772	72017											
CNTNAP3	79937	broad.mit.edu	37	chr9	39171285	39171285	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctagtgggggcatggagCatctcactgcctcactcact	10	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39171285	T	T	39171285	1	4	61	0	1	0	0	0	0	0	0	0	3680	725	25	4		4	CNTNAP3	9	39171285	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	84486	39171285	102042146	3773	72018											
CNTNAP3	79937	broad.mit.edu	37	chr9	39176063	39176063	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgcccgcgatcttccGggtgtcggaattcccccaaa	10	14	1	1	rs142785222	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39176063	T	T	39176063	2	4	61	1	0	0	0	0	0	0	0	1	3680	1103	39	1		1	CNTNAP3	9	39176063	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4778	39176063	102037368	3774	72019											
ZNF658	26149	broad.mit.edu	37	chr9	40784686	40784686	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacagaaaatatctttgagAgctactactaaaatgaatgg	7	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40784686	T	T	40784686	1	4	61	0	1	0	0	0	0	0	0	0	18196	319	11	5		5	ZNF658	9	40784686	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1608623	40784686	100428745	3775	72020											
FAM75A6	389730	broad.mit.edu	37	chr9	43625222	43625222	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctccaaagtggcttacTgaaggaggctgtttctttga	10	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43625222	C	C	43625222	2	2	61	1	0	0	0	0	0	0	0	1	5674	1567	55	5		5	FAM75A6	9	43625222	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2840536	43625222	97588209	3776	72021											
FAM75A6	389730	broad.mit.edu	37	chr9	43630319	43630319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatggactgagatcttgGgatggaaatcccagtacact	11	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43630319	T	T	43630319	1	4	61	0	1	0	0	0	0	0	0	0	5674	1247	43	2		2	FAM75A6	9	43630319	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5097	43630319	97583112	3777	72022											
FAM75A6	389730	broad.mit.edu	37	chr9	43630541	43630541	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggcgatggtgagggtGggtcatcacaatggaagtaa	15	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43630541	A	A	43630541	3	1	61	1	0	0	0	0	1	0	0	0	5674	1348	47	4	3886	4	FAM75A6	9	43630541	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	222	43630541	97582890	3778	72023											
FAM75A5	727905	broad.mit.edu	37	chr9	65507706	65507706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtccaaagccacatgacCccgacgttaatagcaaggca	9	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65507706	A	A	65507706	1	1	61	0	1	0	0	0	0	0	0	0	5673	638	22	2		2	FAM75A5	9	65507706	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21877165	65507706	75705725	3779	72024											
PGM5	5239	broad.mit.edu	37	chr9	71144473	71144473	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttcacagactttccttttCcttttgcaggcagtgctgag	9	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71144473	T	T	71144473	1	4	61	0	1	0	0	0	0	0	0	0	11896	870	30	4		4	PGM5	9	71144473	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5636767	71144473	70068958	3780	72025											
APBA1	320	broad.mit.edu	37	chr9	72046047	72046047	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggagtgcatacgaaacttCcctggtattgaaaaaaaaaa	9	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72046047	T	T	72046047	1	4	61	0	1	0	0	0	0	0	0	0	758	870	30	4		4	APBA1	9	72046047	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	901574	72046047	69167384	3781	72026											
PTAR1	375743	broad.mit.edu	37	chr9	72347217	72347217	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcccaagtttcctttggtCacaaaggaaggcaaggaggt	12	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72347217	G	G	72347217	2	3	61	1	0	0	0	0	0	0	0	1	12830	813	29	4		4	PTAR1	9	72347217	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	301170	72347217	68866214	3782	72027											
SMC5	23137	broad.mit.edu	37	chr9	72879434	72879434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaacatcaatttctacacCtcagttccttgggtatagca	6	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72879434	T	T	72879434	1	4	61	0	1	0	0	0	0	0	0	0	14900	696	24	4		4	SMC5	9	72879434	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	532217	72879434	68333997	3783	72028											
TRPM3	80036	broad.mit.edu	37	chr9	73478071	73478071	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacccctggtattagtcacTattgggatacacacttaagg	9	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73478071	A	A	73478071	1	1	61	0	1	0	0	0	0	0	0	0	16712	1537	53	5		5	TRPM3	9	73478071	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	598637	73478071	67735360	3784	72029											
TRPM3	80036	broad.mit.edu	37	chr9	74039979	74039979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcctgaaagaccttcCactcttggcctctgtaatat	5	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74039979	A	A	74039979	1	1	61	0	1	0	0	0	0	0	0	0	16712	609	21	2		2	TRPM3	9	74039979	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	561908	74039979	67173452	3785	72030											
TMEM2	23670	broad.mit.edu	37	chr9	74329881	74329881	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatgttcgaggcttctggtCtattcctccagtgcctacat	8	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74329881	G	G	74329881	3	3	61	1	0	0	0	0	1	0	0	0	16244	913	32	4	1631	4	TMEM2	9	74329881	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	289902	74329881	66883550	3786	72031											
TMEM2	23670	broad.mit.edu	37	chr9	74345683	74345683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgatgaatagacaggcCgtccacaaatgttgcatgtc	11	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74345683	A	A	74345683	3	1	61	1	0	0	0	0	1	0	0	0	16244	652	23	1	2508	1	TMEM2	9	74345683	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15802	74345683	66867748	3787	72032											
TMEM2	23670	broad.mit.edu	37	chr9	74365095	74365095	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctctgggcttgctgttcTtcaggtgagaatgcgaaggt	13	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74365095	C	C	74365095	2	2	61	1	0	0	0	0	0	0	0	1	16244	1606	56	5		5	TMEM2	9	74365095	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19412	74365095	66848336	3788	72033											
GDA	9615	broad.mit.edu	37	chr9	74845920	74845920	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgtgtcaacattagagccGatatattgggaagcacaatt	9	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74845920	T	T	74845920	1	4	61	0	1	0	0	0	0	0	0	0	6369	1073	37	3		3	GDA	9	74845920	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	480825	74845920	66367511	3789	72034											
GDA	9615	broad.mit.edu	37	chr9	74856030	74856030	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattattccatttatcctcAcaaggttactgttttggttt	6	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74856030	T	T	74856030	1	4	61	0	1	0	0	0	0	0	0	0	6369	174	6	5		5	GDA	9	74856030	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10110	74856030	66357401	3790	72035											
GDA	9615	broad.mit.edu	37	chr9	74862468	74862468	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtggatgataatttgcTttgattcattatttttttaa	6	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74862468	A	A	74862468	1	1	61	0	1	0	0	0	0	0	0	0	6369	1624	56	5		5	GDA	9	74862468	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6438	74862468	66350963	3791	72036											
TMC1	117531	broad.mit.edu	37	chr9	75445692	75445692	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttttctccattggatggtGagtggcattattgctgtgag	12	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75445692	T	T	75445692	1	4	61	0	1	0	0	0	0	0	0	0	16107	1305	45	3		3	TMC1	9	75445692	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	583224	75445692	65767739	3792	72037											
RORB	6096	broad.mit.edu	37	chr9	77300627	77300627	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaagaaaaatgtcactacTgcaacattaggaatgtcctg	7	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77300627	C	C	77300627	1	2	61	0	1	0	0	0	0	0	0	0	13640	1595	55	5		5	RORB	9	77300627	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1854935	77300627	63912804	3793	72038											
TRPM6	140803	broad.mit.edu	37	chr9	77386753	77386753	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttactgaggtagagttcTatagaaataagtatgaaaca	8	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77386753	A	A	77386753	5	1	61	1	0	0	0	0	0	0	1	0	16715	1536	53	5	2726	5	TRPM6	9	77386753	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	86126	77386753	63826678	3794	72039											
TRPM6	140803	broad.mit.edu	37	chr9	77391106	77391106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacattaccggcagttaccCaatacaaatactatccacgt	5	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77391106	A	A	77391106	1	1	61	0	1	0	0	0	0	0	0	0	16715	609	21	2		2	TRPM6	9	77391106	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4353	77391106	63822325	3795	72040											
C9orf41	138199	broad.mit.edu	37	chr9	77598671	77598671	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacttttttccaggtggtatCacttgagaccattattgtgg	9	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77598671	T	T	77598671	1	4	61	0	1	0	0	0	0	0	0	0	2508	841	29	4		4	C9orf41	9	77598671	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	207565	77598671	63614760	3796	72041											
PCSK5	5125	broad.mit.edu	37	chr9	78784490	78784490	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaaattggtgacatccAggatgcagaccagctctagt	10	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78784490	G	G	78784490	1	3	61	0	1	0	0	0	0	0	0	0	11697	203	7	5		5	PCSK5	9	78784490	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1185819	78784490	62428941	3797	72042											
PRUNE2	158471	broad.mit.edu	37	chr9	79323987	79323987	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctttccccgacgtcatccTccatggagatattcttacca	6	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79323987	C	C	79323987	3	2	61	1	0	0	0	0	1	0	0	0	12747	1551	54	5	6111	5	PRUNE2	9	79323987	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	539497	79323987	61889444	3798	72043											
PRUNE2	158471	broad.mit.edu	37	chr9	79328503	79328503	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcacagctccatgttttcTgagtacacagcaatctgtcg	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79328503	C	C	79328503	2	2	61	1	0	0	0	0	0	0	0	1	12747	1567	55	5		5	PRUNE2	9	79328503	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4516	79328503	61884928	3799	72044											
TLE4	7091	broad.mit.edu	37	chr9	82300184	82300184	+	Intron	DEL	G	-	-													tttgtatactgcaatagtttGtttgaaaacatgcccgttgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82300184	-	-	82300184	6	5	61	0	1	1	0	1	0	0	0	0	16064	1392	48	0		0	TLE4	9	82300184	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	2971681	82300184	58913247	3800	72045											
TLE4	7091	broad.mit.edu	37	chr9	82317180	82317180	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttccccctgtgaacagtagGaaactgtccttttaaaagag	8	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82317180	A	A	82317180	1	1	61	0	1	0	0	0	0	0	0	0	16064	1189	41	4		4	TLE4	9	82317180	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16996	82317180	58896251	3801	72046											
FLJ44082	389762	broad.mit.edu	37	chr9	84564667	84564667	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccaacaagctatctttgtCggccagaattatcctgcaat	7	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84564667	A	A	84564667	1	1	61	0	1	0	0	0	0	0	0	0	5988	899	31	3		3	FLJ44082	9	84564667	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2247487	84564667	56648764	3802	72047											
FLJ46321	389763	broad.mit.edu	37	chr9	84603914	84603914	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaaaaaataatgacatcCaaaaggtaaggaactgtggg	10	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84603914	T	T	84603914	4	4	61	1	0	0	0	0	0	1	0	0	5990	595	21	4	183	4	FLJ46321	9	84603914	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	39247	84603914	56609517	3803	72048											
FLJ46321	389763	broad.mit.edu	37	chr9	84607853	84607853	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggggtgagactaggtcAgaaacaacttgaaaatgccc	11	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84607853	G	G	84607853	3	3	61	1	0	0	0	0	1	0	0	0	5990	188	7	5	2482	5	FLJ46321	9	84607853	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3939	84607853	56605578	3804	72049											
HNRNPK	3190	broad.mit.edu	37	chr9	86584513	86584513	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacaaattaaagcaatgtTaagtgtcaagaaaaatgatg	7	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86584513	G	G	86584513	1	3	61	0	1	0	0	0	0	0	0	0	7336	1769	61	5		5	HNRNPK	9	86584513	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1976660	86584513	54628918	3805	72050											
NTRK2	4915	broad.mit.edu	37	chr9	87332946	87332946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcttcttcctcttcccCttcctcttcttcctcctctt	0	19	7	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87332946	A	A	87332946	1	1	61	0	1	0	0	0	0	0	0	0	10802	696	24	2		2	NTRK2	9	87332946	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	748433	87332946	53880485	3806	72051											
NTRK2	4915	broad.mit.edu	37	chr9	87563601	87563601	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggagcaggccttcagggttCaggagtggagggttcatggg	20	6	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87563601	A	A	87563601	1	1	61	0	1	0	0	0	0	0	0	0	10802	841	29	3		3	NTRK2	9	87563601	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	230655	87563601	53649830	3807	72052											
NTRK2	4915	broad.mit.edu	37	chr9	87635234	87635234	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcgtgttgtgggagatTttcacctatggcaaacagcc	14	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87635234	G	G	87635234	3	3	61	1	0	0	0	0	1	0	0	0	10802	1829	64	5	2427	5	NTRK2	9	87635234	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	71633	87635234	53578197	3808	72053											
GOLM1	51280	broad.mit.edu	37	chr9	88677396	88677396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacagagggaagggaggaCgggggaggagggaggaagag	25	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88677396	A	A	88677396	1	1	61	0	1	0	0	0	0	0	0	0	6631	551	19	3		3	GOLM1	9	88677396	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1042162	88677396	52536035	3809	72054											
FAM75C1	441452	broad.mit.edu	37	chr9	90535243	90535243	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccaggtgaggtgggcaaaAgaacacctgatggagcctcc	14	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90535243	C	C	90535243	2	2	61	1	0	0	0	0	0	0	0	1	5676	64	3	5		5	FAM75C1	9	90535243	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1857847	90535243	50678188	3810	72055											
SHC3	53358	broad.mit.edu	37	chr9	91721513	91721513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagttcctacgcacttccCcaaagggcccagcgcccaca	7	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91721513	A	A	91721513	1	1	61	0	1	0	0	0	0	0	0	0	14385	638	22	2		2	SHC3	9	91721513	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1186270	91721513	49491918	3811	72056											
SYK	6850	broad.mit.edu	37	chr9	93606678	93606678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggctacatgcaacacatGtgcctatgtgccctgtgtgc	10	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93606678	T	T	93606678	1	4	61	0	1	0	0	0	0	0	0	0	15557	1392	48	3		3	SYK	9	93606678	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1885165	93606678	47606753	3812	72057											
NOL8	55035	broad.mit.edu	37	chr9	95086546	95086546	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaaaatctaacaaaacaaCtacttcctctgaaccttctg	2	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95086546	T	T	95086546	1	4	61	0	1	0	0	0	0	0	0	0	10622	580	20	4		4	NOL8	9	95086546	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1479868	95086546	46126885	3813	72058											
ECM2	1842	broad.mit.edu	37	chr9	95276838	95276838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtgctgagattataggcgTgagccaccgtgcccagctgc	13	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95276838	C	C	95276838	1	2	61	0	1	0	0	0	0	0	0	0	4938	1711	59	5		5	ECM2	9	95276838	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	190292	95276838	45936593	3814	72059											
FGD3	89846	broad.mit.edu	37	chr9	95795119	95795119	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccgtgtctgcagagattgTttcctgacacagccagtggc	12	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95795119	C	C	95795119	2	2	61	1	0	0	0	0	0	0	0	1	5891	1731	60	5		5	FGD3	9	95795119	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	518281	95795119	45418312	3815	72060											
ZNF169	169841	broad.mit.edu	37	chr9	97062816	97062816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtcaggagtgtgggcgaGgctttcgccagaagatagcc	15	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97062816	T	T	97062816	3	4	61	1	0	0	0	0	1	0	0	0	17868	1000	35	2	990	2	ZNF169	9	97062816	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1267697	97062816	44150615	3816	72061											
FAM22F	54754	broad.mit.edu	37	chr9	97084624	97084624	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactgggctgtaaaccagtGcagtcagtcccagtctgtaa	11	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97084624	A	A	97084624	1	1	61	0	1	0	0	0	0	0	0	0	5592	1334	46	4		4	FAM22F	9	97084624	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21808	97084624	44128807	3817	72062											
FAM22F	54754	broad.mit.edu	37	chr9	97087698	97087698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccatgagccccttgtgGccatggcctagcgttccctg	10	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97087698	T	T	97087698	3	4	61	1	0	0	0	0	1	0	0	0	5592	1203	42	3	1759	3	FAM22F	9	97087698	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3074	97087698	44125733	3818	72063											
FAM22F	54754	broad.mit.edu	37	chr9	97088023	97088023	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggccccactcgggccgcgGccatcctgtcctgccactag	11	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97088023	C	C	97088023	2	2	61	1	0	0	0	0	0	0	0	1	5592	1190	42	4		4	FAM22F	9	97088023	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	325	97088023	44125408	3819	72064											
PTCH1	5727	broad.mit.edu	37	chr9	98241507	98241507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcaaatccccagccagCtcccccaactcactggctgc	6	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98241507	A	A	98241507	1	1	61	0	1	0	0	0	0	0	0	0	12836	812	28	3		3	PTCH1	9	98241507	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1153484	98241507	42971924	3820	72065											
SLC35D2	11046	broad.mit.edu	37	chr9	99083720	99083720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaatacacctgcttcatgCggagggaattattccaatat	7	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99083720	A	A	99083720	1	1	61	0	1	0	0	0	0	0	0	0	14696	783	27	3		3	SLC35D2	9	99083720	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	842213	99083720	42129711	3821	72066											
CTSL2	1515	broad.mit.edu	37	chr9	99799465	99799465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgttgtgccaccatctacCacagcaatgacaccaattcc	5	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99799465	A	A	99799465	1	1	61	0	1	0	0	0	0	0	0	0	4073	609	21	2		2	CTSL2	9	99799465	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	715745	99799465	41413966	3822	72067											
KIAA1529	57653	broad.mit.edu	37	chr9	100053576	100053576	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctggcgggaggagggtagAgggtggcctgcaaggagggg	24	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100053576	C	C	100053576	1	2	61	0	1	0	0	0	0	0	0	0	8310	319	11	5		5	KIAA1529	9	100053576	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	254111	100053576	41159855	3823	72068											
KIAA1529	57653	broad.mit.edu	37	chr9	100077235	100077235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagaagccatggtgagtGgttttcctgtgcagggatca	14	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100077235	T	T	100077235	1	4	61	0	1	0	0	0	0	0	0	0	8310	1363	47	2		2	KIAA1529	9	100077235	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23659	100077235	41136196	3824	72069											
KIAA1529	57653	broad.mit.edu	37	chr9	100136640	100136640	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatccatgaccccctgcccCtgtcaccaccccgagctgtg	7	21	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100136640	T	T	100136640	1	4	61	0	1	0	0	0	0	0	0	0	8310	696	24	4		4	KIAA1529	9	100136640	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	59405	100136640	41076791	3825	72070											
TSTD2	158427	broad.mit.edu	37	chr9	100365094	100365094	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataaacacatacattcacAcacacgtggacaggcattgc	6	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100365094	C	C	100365094	1	2	61	0	1	0	0	0	0	0	0	0	16801	174	6	5		5	TSTD2	9	100365094	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	228454	100365094	40848337	3826	72071											
NCBP1	4686	broad.mit.edu	37	chr9	100403202	100403202	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaggctgtgatgggtttaAgaatgtggttaactgtgctt	13	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100403202	C	C	100403202	1	2	61	0	1	0	0	0	0	0	0	0	10306	87	3	5		5	NCBP1	9	100403202	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	38108	100403202	40810229	3827	72072											
TBC1D2	55357	broad.mit.edu	37	chr9	100997387	100997387	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccagctactcgggaggctGaggcagagaatcgcttgaac	13	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100997387	A	A	100997387	1	1	61	0	1	0	0	0	0	0	0	0	15727	1305	45	4		4	TBC1D2	9	100997387	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	594185	100997387	40216044	3828	72073											
GABBR2	9568	broad.mit.edu	37	chr9	101056158	101056158	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggggattttgatcgaggtGattttttaaaatggcctttc	11	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101056158	C	C	101056158	3	2	61	1	0	0	0	0	1	0	0	0	6216	1290	45	4	264	4	GABBR2	9	101056158	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	58771	101056158	40157273	3829	72074											
GABBR2	9568	broad.mit.edu	37	chr9	101156562	101156562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagcaaaagacagtggcCagttagactgggatctgggt	17	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101156562	A	A	101156562	1	1	61	0	1	0	0	0	0	0	0	0	6216	609	21	2		2	GABBR2	9	101156562	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	100404	101156562	40056869	3830	72075											
GABBR2	9568	broad.mit.edu	37	chr9	101216083	101216083	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcattttcccaatgtgtctGagagcacacactgcccctgc	8	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101216083	C	C	101216083	1	2	61	0	1	0	0	0	0	0	0	0	6216	1305	45	4		4	GABBR2	9	101216083	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59521	101216083	39997348	3831	72076											
GABBR2	9568	broad.mit.edu	37	chr9	101377071	101377071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagatgctttggggagggaGggagggagagagacagacat	19	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101377071	T	T	101377071	1	4	61	0	1	0	0	0	0	0	0	0	6216	1015	35	2		2	GABBR2	9	101377071	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	160988	101377071	39836360	3832	72077											
ANKS6	203286	broad.mit.edu	37	chr9	101544820	101544820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgaagagtgacatcggccCcttggtttagcagatatttc	10	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101544820	A	A	101544820	3	1	61	1	0	0	0	0	1	0	0	0	692	623	22	2	1511	2	ANKS6	9	101544820	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	167749	101544820	39668611	3833	72078											
GALNT12	79695	broad.mit.edu	37	chr9	101599541	101599541	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatagagaataaattggGtgctcagatacgagtaaggg	13	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101599541	T	T	101599541	1	4	61	0	1	0	0	0	0	0	0	0	6272	1276	44	3		3	GALNT12	9	101599541	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54721	101599541	39613890	3834	72079											
COL15A1	1306	broad.mit.edu	37	chr9	101751637	101751637	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggtctgacctctttgTttccagacctgtgagcttaa	9	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101751637	A	A	101751637	1	1	61	0	1	0	0	0	0	0	0	0	3704	1740	60	5		5	COL15A1	9	101751637	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	152096	101751637	39461794	3835	72080											
COL15A1	1306	broad.mit.edu	37	chr9	101767101	101767101	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtgctttgaggggcccTggccttctgttccttaccac	12	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101767101	C	C	101767101	1	2	61	0	1	0	0	0	0	0	0	0	3704	1595	55	5		5	COL15A1	9	101767101	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15464	101767101	39446330	3836	72081											
COL15A1	1306	broad.mit.edu	37	chr9	101784856	101784856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctcctcctcctctcttGggcgatggcaccagcctcct	9	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101784856	T	T	101784856	1	4	61	0	1	0	0	0	0	0	0	0	3704	1363	47	2		2	COL15A1	9	101784856	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17755	101784856	39428575	3837	72082											
INVS	27130	broad.mit.edu	37	chr9	102888679	102888679	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttataggaaactctgctcttAaagacaaagaagatcagttt	7	6	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102888679	G	G	102888679	3	3	61	1	0	0	0	0	1	0	0	0	7857	363	13	5	127	5	INVS	9	102888679	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1103823	102888679	38324752	3838	72083											
TMEFF1	8577	broad.mit.edu	37	chr9	103300008	103300009	+	Intron	DEL	AT	-	-													atgactaaatgtttgtgcacAtgttttcacccacgcatagt					rs143129911		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103300009	-	-	103300008	6	5	61	0	1	1	0	1	0	0	0	0	16136	232	8	0		0	TMEFF1	9	103300008	Intron	DEL	AT	TCGA-17-Z031-01A-01W-0746-08	411329	103300008	37913423	3839	72084											
BAAT	570	broad.mit.edu	37	chr9	104125270	104125270	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtactccttgacatacagAgactaccccaacgcctgagc	7	15	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104125270	G	G	104125270	3	3	61	1	0	0	0	0	1	0	0	0	1285	304	11	5	563	5	BAAT	9	104125270	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	825262	104125270	37088161	3840	72085											
ALDOB	229	broad.mit.edu	37	chr9	104187073	104187073	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttctccgtgttggaaagtCaagccccaaatgtgaacatc	9	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104187073	A	A	104187073	1	1	61	0	1	0	0	0	0	0	0	0	508	841	29	3		3	ALDOB	9	104187073	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61803	104187073	37026358	3841	72086											
SMC2	10592	broad.mit.edu	37	chr9	106889393	106889393	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccaagttttcttctgtgtAtaaattgattagtcctttta	5	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106889393	T	T	106889393	1	4	61	0	1	0	0	0	0	0	0	0	14897	464	16	5		5	SMC2	9	106889393	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2702320	106889393	34324038	3842	72087											
OR13C2	392376	broad.mit.edu	37	chr9	107367580	107367580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccagaagcacacactctGttgtccccatggccaagccg	9	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107367580	T	T	107367580	3	4	61	1	0	0	0	0	1	0	0	0	11028	1377	48	3	630	3	OR13C2	9	107367580	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	478187	107367580	33845851	3843	72088											
ABCA1	19	broad.mit.edu	37	chr9	107594092	107594092	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgctatgggttctagcTtgttcaggttgacacactga	11	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107594092	A	A	107594092	3	1	61	1	0	0	0	0	1	0	0	0	28	1609	56	5	5411	5	ABCA1	9	107594092	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	226512	107594092	33619339	3844	72089											
SLC44A1	23446	broad.mit.edu	37	chr9	108089985	108089985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgctctgttcctgcgctGttcctaccccctttcatcca	6	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108089985	T	T	108089985	1	4	61	0	1	0	0	0	0	0	0	0	14749	1392	48	3		3	SLC44A1	9	108089985	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	495893	108089985	33123446	3845	72090											
SLC44A1	23446	broad.mit.edu	37	chr9	108145658	108145658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtaagtacttcaaatgcCgtttcctattttagggataa	8	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108145658	A	A	108145658	1	1	61	0	1	0	0	0	0	0	0	0	14749	667	23	1		1	SLC44A1	9	108145658	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	55673	108145658	33067773	3846	72091											
ZNF462	58499	broad.mit.edu	37	chr9	109688018	109688018	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaccatgtgtaattactccAccacaactctgaaagggcta	7	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109688018	T	T	109688018	3	4	61	1	0	0	0	0	1	0	0	0	18053	159	6	5	1831	5	ZNF462	9	109688018	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1542360	109688018	31525413	3847	72092											
ZNF462	58499	broad.mit.edu	37	chr9	109727606	109727606	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagctttactcttgagcaAtagggcacactcatatcata	7	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109727606	C	C	109727606	1	2	61	0	1	0	0	0	0	0	0	0	18053	116	4	5		5	ZNF462	9	109727606	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	39588	109727606	31485825	3848	72093											
RAD23B	5887	broad.mit.edu	37	chr9	110086365	110086365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgaaaaagtccatgaacGgtccttcccctcctcaaata	5	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110086365	T	T	110086365	1	4	61	0	1	0	0	0	0	0	0	0	13091	1131	39	1		1	RAD23B	9	110086365	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	358759	110086365	31127066	3849	72094											
RAD23B	5887	broad.mit.edu	37	chr9	110087176	110087176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccagttcaagaagctgGtggtcaaggaggaggaggtg	17	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110087176	T	T	110087176	3	4	61	1	0	0	0	0	1	0	0	0	13091	1261	44	3	1041	3	RAD23B	9	110087176	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	811	110087176	31126255	3850	72095											
EPB41L4B	54566	broad.mit.edu	37	chr9	111944832	111944832	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaatggttaattttatGtcaatgtcacatcaataaaa	4	4	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111944832	A	A	111944832	1	1	61	0	1	0	0	0	0	0	0	0	5198	1392	48	4		4	EPB41L4B	9	111944832	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1857656	111944832	29268599	3851	72096											
PTPN3	5774	broad.mit.edu	37	chr9	112160485	112160485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacttgaatcacttgaaCgtgggaggcagaggctgcag	13	8	2	3	rs140107725	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112160485	A	A	112160485	1	1	61	0	1	0	0	0	0	0	0	0	12897	551	19	3		3	PTPN3	9	112160485	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	215653	112160485	29052946	3852	72097											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112686274	112686274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaggggcagatgtgtgaGgaccaggggccatcctgaag	17	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112686274	T	T	112686274	1	4	61	0	1	0	0	0	0	0	0	0	11504	1015	35	2		2	PALM2-AKAP2	9	112686274	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	525789	112686274	28527157	3853	72098											
SVEP1	79987	broad.mit.edu	37	chr9	113168921	113168921	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccattggagaggcaccttcTtgatgaatttccatggagct	11	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113168921	G	G	113168921	2	3	61	1	0	0	0	0	0	0	0	1	15538	1617	56	5		5	SVEP1	9	113168921	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	482647	113168921	28044510	3854	72099											
SVEP1	79987	broad.mit.edu	37	chr9	113312282	113312282	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctccactcctgaatctcGcagtgacgctgcaattggtc	9	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113312282	T	T	113312282	2	4	61	1	0	0	0	0	0	0	0	1	15538	1095	38	3		3	SVEP1	9	113312282	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	143361	113312282	27901149	3855	72100											
SVEP1	79987	broad.mit.edu	37	chr9	113341784	113341784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgcccagcccgaaacgaGcgccagaccccagcaacaaa	10	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113341784	T	T	113341784	3	4	61	1	0	0	0	0	1	0	0	0	15538	971	34	3	10867	3	SVEP1	9	113341784	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29502	113341784	27871647	3856	72101											
PTGR1	22949	broad.mit.edu	37	chr9	114336950	114336950	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtcactggcctatggcaTatctgtgaattttctccttg	9	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114336950	C	C	114336950	1	2	61	0	1	0	0	0	0	0	0	0	12859	1421	49	5		5	PTGR1	9	114336950	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	995166	114336950	26876481	3857	72102											
POLE3	54107	broad.mit.edu	37	chr9	116171803	116171803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttactggacttaaagggaCccgcgctgagaaggctcagg	14	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116171803	A	A	116171803	1	1	61	0	1	0	0	0	0	0	0	0	12293	522	18	3		3	POLE3	9	116171803	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1834853	116171803	25041628	3858	72103											
ZNF618	114991	broad.mit.edu	37	chr9	116697589	116697589	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgcagcgggttcactAagaggagcatctcaccaagg	12	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116697589	T	T	116697589	1	4	61	0	1	0	0	0	0	0	0	0	18169	377	13	5		5	ZNF618	9	116697589	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	525786	116697589	24515842	3859	72104											
KIF12	113220	broad.mit.edu	37	chr9	116854636	116854636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagccctggtgatgtcttcGggggcctcacaggcagggga	17	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116854636	A	A	116854636	3	1	61	1	0	0	0	0	1	0	0	0	8343	1116	39	4	170	4	KIF12	9	116854636	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	157047	116854636	24358795	3860	72105											
AKNA	80709	broad.mit.edu	37	chr9	117129925	117129925	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccggaagccaccccagggtGggcatgctggtaagcgagga	16	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117129925	A	A	117129925	2	1	61	1	0	0	0	0	0	0	0	1	463	1335	47	4		4	AKNA	9	117129925	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	275289	117129925	24083506	3861	72106											
ASTN2	23245	broad.mit.edu	37	chr9	119526274	119526274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcactgagcatcccttgggGgccaaatattctgaacacat	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119526274	T	T	119526274	1	4	61	0	1	0	0	0	0	0	0	0	1069	1247	43	2		2	ASTN2	9	119526274	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2396349	119526274	21687157	3862	72107											
ASTN2	23245	broad.mit.edu	37	chr9	119737595	119737595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttttgctgacaggaagcCagaggccttggcccaagctg	13	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119737595	A	A	119737595	3	1	61	1	0	0	0	0	1	0	0	0	1069	595	21	2	2526	2	ASTN2	9	119737595	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	211321	119737595	21475836	3863	72108											
ASTN2	23245	broad.mit.edu	37	chr9	119748289	119748289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaacgggcatcttaaacCcaatttttaaaattgtcaca	5	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119748289	A	A	119748289	1	1	61	0	1	0	0	0	0	0	0	0	1069	638	22	2		2	ASTN2	9	119748289	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10694	119748289	21465142	3864	72109											
ASTN2	23245	broad.mit.edu	37	chr9	119837791	119837791	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagggggagggggaggagGaggagggggcaggctgattg	27	2	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119837791	T	T	119837791	1	4	61	0	1	0	0	0	0	0	0	0	1069	1189	41	3		3	ASTN2	9	119837791	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	89502	119837791	21375640	3865	72110											
ASTN2	23245	broad.mit.edu	37	chr9	119879671	119879671	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaaagaaaagaacgaaGaaagagaaaaaaaaaaaacg	7	2	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119879671	A	A	119879671	1	1	61	0	1	0	0	0	0	0	0	0	1069	957	33	4		4	ASTN2	9	119879671	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	41880	119879671	21333760	3866	72111											
ASTN2	23245	broad.mit.edu	37	chr9	119909770	119909770	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccaccgttctcttccccCacgcaaccacccaggacgtt	5	19	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119909770	A	A	119909770	1	1	61	0	1	0	0	0	0	0	0	0	1069	609	21	2		2	ASTN2	9	119909770	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30099	119909770	21303661	3867	72112											
ASTN2	23245	broad.mit.edu	37	chr9	120063985	120063985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcactcaggtgctctgcCtatccatttcatcatagtaa	7	11	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120063985	A	A	120063985	1	1	61	0	1	0	0	0	0	0	0	0	1069	696	24	2		2	ASTN2	9	120063985	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	154215	120063985	21149446	3868	72113											
ASTN2	23245	broad.mit.edu	37	chr9	120100667	120100667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttcttgaagcatataagCaccttcaatcctacagatcc	4	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120100667	A	A	120100667	1	1	61	0	1	0	0	0	0	0	0	0	1069	725	25	3		3	ASTN2	9	120100667	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36682	120100667	21112764	3869	72114											
ASTN2	23245	broad.mit.edu	37	chr9	120115357	120115357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtcatgaaaaagtgttGgaaatacatggtgttgatgg	15	2	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120115357	T	T	120115357	1	4	61	0	1	0	0	0	0	0	0	0	1069	1363	47	2		2	ASTN2	9	120115357	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14690	120115357	21098074	3870	72115											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123166239	123166239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagttgggaccagggaccCcccttttctgcaagttaaaa	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123166239	A	A	123166239	1	1	61	0	1	0	0	0	0	0	0	0	3176	638	22	2		2	CDK5RAP2	9	123166239	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3050882	123166239	18047192	3871	72116											
FBXW2	26190	broad.mit.edu	37	chr9	123550109	123550109	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggcactgtgtccaattaatGacgaggtttcaaaggcttca	10	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123550109	C	C	123550109	4	2	61	1	0	0	0	0	0	1	0	0	5823	1294	45	4	960	4	FBXW2	9	123550109	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	383870	123550109	17663322	3872	72117											
DAB2IP	153090	broad.mit.edu	37	chr9	124528955	124528955	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaccctgatgaccgcactgCccgcaccctcaccctcatcg	7	20	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124528955	T	T	124528955	3	4	61	1	0	0	0	0	1	0	0	0	4252	739	26	4	1593	4	DAB2IP	9	124528955	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	978846	124528955	16684476	3873	72118											
TTLL11	158135	broad.mit.edu	37	chr9	124745861	124745861	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagccagggaggtaggaggGaaactggagtgtatccttct	16	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124745861	C	C	124745861	1	2	61	0	1	0	0	0	0	0	0	0	16850	1189	41	4		4	TTLL11	9	124745861	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	216906	124745861	16467570	3874	72119											
MORN5	254956	broad.mit.edu	37	chr9	124929362	124929362	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttttttttttagtctcactCtgtcaccaggctggagtgca	8	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124929362	A	A	124929362	1	1	61	0	1	0	0	0	0	0	0	0	9805	928	32	3		3	MORN5	9	124929362	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	183501	124929362	16284069	3875	72120											
LHX6	26468	broad.mit.edu	37	chr9	124971944	124971944	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcggctttgaggtggacGgggggtgcggtgtaaggcag	20	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124971944	T	T	124971944	2	4	61	1	0	0	0	0	0	0	0	1	8847	1103	39	1		1	LHX6	9	124971944	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42582	124971944	16241487	3876	72121											
MRRF	92399	broad.mit.edu	37	chr9	125042807	125042807	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttggaagaggtgaatgaAgaaatgaagtctgtgataga	13	2	1	7			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125042807	T	T	125042807	3	4	61	1	0	0	0	0	1	0	0	0	9944	69	3	5	276	5	MRRF	9	125042807	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	70863	125042807	16170624	3877	72122											
PTGS1	5742	broad.mit.edu	37	chr9	125148998	125148998	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggatgccttctctcgccAgattgctggccgggtaagcc	14	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125148998	G	G	125148998	3	3	61	1	0	0	0	0	1	0	0	0	12861	188	7	5	1317	5	PTGS1	9	125148998	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	106191	125148998	16064433	3878	72123											
PTGS1	5742	broad.mit.edu	37	chr9	125154487	125154487	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagagaaggagatggcagcAgagttggaggaattgtatgg	19	2	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125154487	G	G	125154487	2	3	61	1	0	0	0	0	0	0	0	1	12861	175	7	5		5	PTGS1	9	125154487	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5489	125154487	16058944	3879	72124											
OR1N2	138882	broad.mit.edu	37	chr9	125316168	125316168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatgtccgcattttctgGgctgtgtttgtcatctcatc	8	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125316168	T	T	125316168	3	4	61	1	0	0	0	0	1	0	0	0	11064	1241	43	2	722	2	OR1N2	9	125316168	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	161681	125316168	15897263	3880	72125											
OR1B1	347169	broad.mit.edu	37	chr9	125391288	125391288	+	Frame_Shift_Del	DEL	C	-	-													agtgaggaaggttaacgttgCccccagcatccccagtccag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125391288	-	-	125391288	7	5	61	1	0	1	0	1	0	0	0	0	11045	739	26	0	432	0	OR1B1	9	125391288	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	75120	125391288	15822143	3881	72126											
OR1B1	347169	broad.mit.edu	37	chr9	125391866	125391866	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtcaaaaagaaagtcatGggtctgatgttagggatcat	11	4	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125391866	T	T	125391866	1	4	61	0	1	0	0	0	0	0	0	0	11045	1363	47	2		2	OR1B1	9	125391866	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	578	125391866	15821565	3882	72127											
OR1L6	392390	broad.mit.edu	37	chr9	125511845	125511845	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacaaaaaaattagccgGgcgtggtggcggatgcctgt	13	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125511845	T	T	125511845	1	4	61	0	1	0	0	0	0	0	0	0	11060	1247	43	2		2	OR1L6	9	125511845	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	119979	125511845	15701586	3883	72128											
RC3H2	54542	broad.mit.edu	37	chr9	125659558	125659558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaatcttgaatgcttacCtgggctccaactaactggag	9	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125659558	A	A	125659558	3	1	61	1	0	0	0	0	1	0	0	0	13275	695	24	2	3502	2	RC3H2	9	125659558	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	147713	125659558	15553873	3884	72129											
ZBTB26	57684	broad.mit.edu	37	chr9	125682054	125682054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcttaagaagggggaacCtgcagcaaacacaattttat	9	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125682054	A	A	125682054	3	1	61	1	0	0	0	0	1	0	0	0	17659	681	24	2	1169	2	ZBTB26	9	125682054	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22496	125682054	15531377	3885	72130											
DENND1A	57706	broad.mit.edu	37	chr9	126605807	126605807	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagttttgtaggagcataaCttgaagcactgccaatacca	8	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126605807	G	G	126605807	1	3	61	0	1	0	0	0	0	0	0	0	4466	580	20	4		4	DENND1A	9	126605807	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	923753	126605807	14607624	3886	72131											
OLFML2A	169611	broad.mit.edu	37	chr9	127572311	127572311	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acattgactttgccgtggacGagagcggcctgtgggtcatc	14	10	1	2	rs140626253	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127572311	A	A	127572311	3	1	61	1	0	0	0	0	1	0	0	0	10952	1059	37	4	1609	4	OLFML2A	9	127572311	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	966504	127572311	13641120	3887	72132											
SCAI	286205	broad.mit.edu	37	chr9	127781279	127781279	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatggccaagactaaatatCaatagagtaagctattcctt	7	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127781279	A	A	127781279	1	1	61	0	1	0	0	0	0	0	0	0	13981	841	29	3		3	SCAI	9	127781279	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	208968	127781279	13432152	3888	72133											
LMX1B	4010	broad.mit.edu	37	chr9	129458719	129458719	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actccatgcagagttcctacTtcgcctcctgagagccagcc	8	16	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129458719	G	G	129458719	3	3	61	1	0	0	0	0	1	0	0	0	8936	1609	56	5	1261	5	LMX1B	9	129458719	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1677440	129458719	11754712	3889	72134											
STXBP1	6812	broad.mit.edu	37	chr9	130420633	130420634	+	Intron	INS	-	T	T													tcatgttttcttattcactgINStgggttgttttgttgtctag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130420634	T	T	130420633	6	5	61	0	1	1	1	0	0	0	0	0	15470	1392	48	0		0	STXBP1	9	130420633	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	961914	130420633	10792798	3890	72135											
SH2D3C	10044	broad.mit.edu	37	chr9	130509559	130509559	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcgacgtactgtggagCagacaccatcatgggcaggg	16	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130509559	A	A	130509559	1	1	61	0	1	0	0	0	0	0	0	0	14347	725	25	3		3	SH2D3C	9	130509559	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	88926	130509559	10703872	3891	72136											
DNM1	1759	broad.mit.edu	37	chr9	130982360	130982360	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagctgctccccctgcGcagaggtaagcaggccatgc	12	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130982360	T	T	130982360	3	4	61	1	0	0	0	0	1	0	0	0	4710	1087	38	3	701	3	DNM1	9	130982360	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	472801	130982360	10231071	3892	72137											
SLC27A4	10999	broad.mit.edu	37	chr9	131105559	131105559	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtcttcatcaagaccatcAggcgcgatatcttgtgagta	11	9	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131105559	T	T	131105559	3	4	61	1	0	0	0	0	1	0	0	0	14642	179	7	5	150	5	SLC27A4	9	131105559	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	123199	131105559	10107872	3893	72138											
SPTAN1	6709	broad.mit.edu	37	chr9	131361170	131361170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgtgtttccaggtttGgccataataagtattcttga	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131361170	T	T	131361170	1	4	61	0	1	0	0	0	0	0	0	0	15235	1363	47	2		2	SPTAN1	9	131361170	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	255611	131361170	9852261	3894	72139											
CCBL1	883	broad.mit.edu	37	chr9	131596097	131596097	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggagacagggatggcCaccaagccctggggaggagg	18	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131596097	A	A	131596097	2	1	61	1	0	0	0	0	0	0	0	1	2758	581	21	2		2	CCBL1	9	131596097	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	234927	131596097	9617334	3895	72140											
ASS1	445	broad.mit.edu	37	chr9	133359187	133359187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcctcctccctctctccCtttcctcctccttcccctct	0	24	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133359187	A	A	133359187	1	1	61	0	1	0	0	0	0	0	0	0	1065	696	24	2		2	ASS1	9	133359187	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1763090	133359187	7854244	3896	72141											
FUBP3	8939	broad.mit.edu	37	chr9	133505897	133505897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaacttctctactgtcagGgcaagtgccgacgtgcacaa	10	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133505897	T	T	133505897	1	4	61	0	1	0	0	0	0	0	0	0	6153	1247	43	2		2	FUBP3	9	133505897	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	146710	133505897	7707534	3897	72142											
ABL1	25	broad.mit.edu	37	chr9	133738224	133738224	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcaacggtggccgacggGctcatcaccacgctccatta	9	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133738224	T	T	133738224	2	4	61	1	0	0	0	0	0	0	0	1	92	1190	42	3		3	ABL1	9	133738224	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	232327	133738224	7475207	3898	72143											
LAMC3	10319	broad.mit.edu	37	chr9	133928337	133928337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcctccgcgtcagtcccGgccccagccctgccggtcag	11	21	2	0	rs150699964	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133928337	T	T	133928337	3	4	61	1	0	0	0	0	1	0	0	0	8688	1116	39	1	1966	1	LAMC3	9	133928337	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	190113	133928337	7285094	3899	72144											
NTNG2	84628	broad.mit.edu	37	chr9	135083584	135083584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggaggggggctttgaaGgagaaacctgaagggggaac	19	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135083584	T	T	135083584	1	4	61	0	1	0	0	0	0	0	0	0	10800	1015	35	2		2	NTNG2	9	135083584	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1155247	135083584	6129847	3900	72145											
SETX	23064	broad.mit.edu	37	chr9	135206758	135206758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataggatccataagttgacCccagaccttagatccaaggc	8	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135206758	A	A	135206758	3	1	61	1	0	0	0	0	1	0	0	0	14254	623	22	2	7193	2	SETX	9	135206758	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	123174	135206758	6006673	3901	72146											
GFI1B	8328	broad.mit.edu	37	chr9	135862731	135862731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctattcccaaaccagtgcCtggactggaccaacctcaaa	6	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135862731	A	A	135862731	3	1	61	1	0	0	0	0	1	0	0	0	6404	680	24	2	169	2	GFI1B	9	135862731	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	655973	135862731	5350700	3902	72147											
OBP2B	29989	broad.mit.edu	37	chr9	136083606	136083606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctggaaaacaggagaCacgcgggcagcggctcccag	13	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136083606	A	A	136083606	1	1	61	0	1	0	0	0	0	0	0	0	10906	493	17	3		3	OBP2B	9	136083606	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	220875	136083606	5129825	3903	72148											
ADAMTS13	11093	broad.mit.edu	37	chr9	136298373	136298373	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgtgtgtttgggggtcGctgtgggtggggtccctgtg	20	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136298373	A	A	136298373	1	1	61	0	1	0	0	0	0	0	0	0	258	1102	38	4		4	ADAMTS13	9	136298373	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	214767	136298373	4915058	3904	72149											
SARDH	1757	broad.mit.edu	37	chr9	136573493	136573493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtagttcttggcgtaggaCtcatggcttcgctctcggat	13	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136573493	A	A	136573493	3	1	61	1	0	0	0	0	1	0	0	0	13953	564	20	3	1414	3	SARDH	9	136573493	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	275120	136573493	4639938	3905	72150											
VAV2	7410	broad.mit.edu	37	chr9	136661676	136661676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacagggcgatgggagagcCctccccgaggaaagcctgaa	15	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136661676	A	A	136661676	1	1	61	0	1	0	0	0	0	0	0	0	17259	638	22	2		2	VAV2	9	136661676	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	88183	136661676	4551755	3906	72151											
COL5A1	1289	broad.mit.edu	37	chr9	137704366	137704366	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggtaagtgtgcctgagacTccaaggccttgccgtactag	12	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137704366	C	C	137704366	1	2	61	0	1	0	0	0	0	0	0	0	3728	1566	54	5		5	COL5A1	9	137704366	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1042690	137704366	3509065	3907	72152											
LCN1	3933	broad.mit.edu	37	chr9	138416983	138416983	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttttcctgcagaaaccTgctctccagggagcgattag	9	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138416983	C	C	138416983	3	2	61	1	0	0	0	0	1	0	0	0	8752	1580	55	5	533	5	LCN1	9	138416983	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	712617	138416983	2796448	3908	72153											
KCNT1	57582	broad.mit.edu	37	chr9	138669216	138669216	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagctatgaagacgccaaGgcctacgggttcaagaacaa	10	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138669216	A	A	138669216	2	1	61	1	0	0	0	0	0	0	0	1	8161	991	35	4		4	KCNT1	9	138669216	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	252233	138669216	2544215	3909	72154											
UBAC1	10422	broad.mit.edu	37	chr9	138838168	138838168	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttcagcgctaacagcttcTgcgccacctcgatgagagac	11	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138838168	A	A	138838168	3	1	61	1	0	0	0	0	1	0	0	0	16960	1580	55	5	750	5	UBAC1	9	138838168	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	168952	138838168	2375263	3910	72155											
EHMT1	79813	broad.mit.edu	37	chr9	140637941	140637941	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacagaggacggtgattgaGatgtttaagagcataactca	11	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140637941	T	T	140637941	3	4	61	1	0	0	0	0	1	0	0	0	5023	933	33	3	960	3	EHMT1	9	140637941	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1799773	140637941	575490	3911	72156											
EHMT1	79813	broad.mit.edu	37	chr9	140682477	140682477	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccaggccctaggctccGggaagagggttgagggcctg	19	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140682477	A	A	140682477	1	1	61	0	1	0	0	0	0	0	0	0	5023	1131	39	4		4	EHMT1	9	140682477	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44536	140682477	530954	3912	72157											
CACNA1B	774	broad.mit.edu	37	chr9	140943792	140943792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacgttcgctctgctctgGctagggagagcccccagaat	12	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140943792	T	T	140943792	1	4	61	0	1	0	0	0	0	0	0	0	2565	1218	42	3		3	CACNA1B	9	140943792	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	261315	140943792	269639	3913	72158											
TUBB8	347688	broad.mit.edu	37	chr10	94595	94595	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagacctgcccgaagggCcccgagcgcacagagtccat	12	15	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94595	A	A	94595	2	1	61	1	0	0	0	0	0	0	0	1	16887	726	26	3		3	TUBB8	10	94595	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08		94595	135440152	3914	72159											
DIP2C	22982	broad.mit.edu	37	chr10	370974	370974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcactttaggaggcaaaGgaaggcggatcatgaggtca	14	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	370974	T	T	370974	1	4	61	0	1	0	0	0	0	0	0	0	4569	1015	35	2		2	DIP2C	10	370974	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	276379	370974	135163773	3915	72160											
GTPBP4	23560	broad.mit.edu	37	chr10	1055727	1055727	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggatcccttatgcccagGagtttgagaccaacctgggc	11	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1055727	T	T	1055727	1	4	61	0	1	0	0	0	0	0	0	0	6947	1189	41	3		3	GTPBP4	10	1055727	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	684753	1055727	134479020	3916	72161											
IDI2	91734	broad.mit.edu	37	chr10	1068748	1068748	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccatttgtgtgagtgcaTgcctggagtctgtacgattg	14	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1068748	G	G	1068748	1	3	61	0	1	0	0	0	0	0	0	0	7570	1479	51	5		5	IDI2	10	1068748	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13021	1068748	134465999	3917	72162											
ADARB2	105	broad.mit.edu	37	chr10	1622346	1622346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttcaggagtacatgtacGtgtttgttgcacaggtaaat	12	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1622346	T	T	1622346	1	4	61	0	1	0	0	0	0	0	0	0	283	1160	40	3		3	ADARB2	10	1622346	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	553598	1622346	133912401	3918	72163											
ADARB2	105	broad.mit.edu	37	chr10	1667989	1667989	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgacccctctcacccttcTcctgctgagctgtggccttc	7	20	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1667989	C	C	1667989	1	2	61	0	1	0	0	0	0	0	0	0	283	1566	54	5		5	ADARB2	10	1667989	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	45643	1667989	133866758	3919	72164											
PFKP	5214	broad.mit.edu	37	chr10	3141601	3141601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagactcttttatgtctaGtaaattcccagaacacttga	6	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3141601	T	T	3141601	1	4	61	0	1	0	0	0	0	0	0	0	11861	1044	36	3		3	PFKP	10	3141601	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1473612	3141601	132393146	3920	72165											
PITRM1	10531	broad.mit.edu	37	chr10	3212375	3212375	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcccggttactgttccatCgccacgctctgtggtgtgca	11	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3212375	T	T	3212375	1	4	61	0	1	0	0	0	0	0	0	0	12048	884	31	4		4	PITRM1	10	3212375	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	70774	3212375	132322372	3921	72166											
AKR1E2	83592	broad.mit.edu	37	chr10	4932286	4932286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaaaagaacctttttttTccctactaagggctaagagc	6	9	1	2	rs71499610		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4932286	C	C	4932286	1	2	61	0	1	0	0	0	0	0	0	0	474	1798	62	5		5	AKR1E2	10	4932286	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1719911	4932286	130602461	3922	72167											
UCN3	114131	broad.mit.edu	37	chr10	5412545	5412545	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtatatgcgtgtatatgTgtgtatatgtgtgtgtgtat	13	1	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5412545	C	C	5412545	1	2	61	0	1	0	0	0	0	0	0	0	17055	1711	59	5		5	UCN3	10	5412545	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	480259	5412545	130122202	3923	72168											
NET1	10276	broad.mit.edu	37	chr10	5496321	5496321	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaggatccaagagtccaaGacttcctccagcgatgtctc	8	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5496321	T	T	5496321	3	4	61	1	0	0	0	0	1	0	0	0	10433	942	33	3	993	3	NET1	10	5496321	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	83776	5496321	130038426	3924	72169											
ASB13	79754	broad.mit.edu	37	chr10	5690477	5690477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacccactcgggtaaacacCcacgcgggcaaacacctact	7	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5690477	A	A	5690477	1	1	61	0	1	0	0	0	0	0	0	0	1021	638	22	2		2	ASB13	10	5690477	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	194156	5690477	129844270	3925	72170											
C10orf18	54906	broad.mit.edu	37	chr10	5788150	5788150	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgtttcaggtaactggGgaagaagctaaacaagaatc	12	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5788150	T	T	5788150	2	4	61	1	0	0	0	0	0	0	0	1	1607	1219	43	2		2	C10orf18	10	5788150	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	97673	5788150	129746597	3926	72171											
IL2RA	3559	broad.mit.edu	37	chr10	6061223	6061223	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactaaccaactaacctccCaacctacgaaccaacttacc	1	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6061223	T	T	6061223	1	4	61	0	1	0	0	0	0	0	0	0	7756	609	21	4		4	IL2RA	10	6061223	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	273073	6061223	129473524	3927	72172											
PRKCQ	5588	broad.mit.edu	37	chr10	6498683	6498683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaggtattcgtcttggCatctcctaacatgttctcct	7	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6498683	A	A	6498683	3	1	61	1	0	0	0	0	1	0	0	0	12621	710	25	3	536	3	PRKCQ	10	6498683	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	437460	6498683	129036064	3928	72173											
ITIH5	80760	broad.mit.edu	37	chr10	7614297	7614297	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatttttattatagttccagGatgctggcaaaaggaaattt	8	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7614297	T	T	7614297	1	4	61	0	1	0	0	0	0	0	0	0	7977	1164	41	3		3	ITIH5	10	7614297	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1115614	7614297	127920450	3929	72174											
ITIH5	80760	broad.mit.edu	37	chr10	7618494	7618494	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgacatgccgtgggcctcctCcaggccatccatgcgtggga	13	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7618494	A	A	7618494	4	1	61	1	0	0	0	0	0	1	0	0	7977	864	30	3	1071	3	ITIH5	10	7618494	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4197	7618494	127916253	3930	72175											
ITIH5	80760	broad.mit.edu	37	chr10	7628109	7628110	+	Intron	DEL	CG	-	-													cctgttctagaaaccgccccCgccccccaggaaaaatgtca					rs3841465		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7628110	-	-	7628109	6	5	61	0	1	1	0	1	0	0	0	0	7977	667	23	0		0	ITIH5	10	7628109	Intron	DEL	CG	TCGA-17-Z031-01A-01W-0746-08	9615	7628109	127906638	3931	72176											
ITIH2	3698	broad.mit.edu	37	chr10	7745435	7745435	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcatctgcttctttcTttctgaagtatcaggcttcg	6	10	6	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7745435	G	G	7745435	3	3	61	1	0	0	0	0	1	0	0	0	7974	1609	56	5	40	5	ITIH2	10	7745435	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	117326	7745435	127789312	3932	72177											
ITIH2	3698	broad.mit.edu	37	chr10	7772360	7772360	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaaaggccttctgagcGtcatcaaagctccttgtagc	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7772360	A	A	7772360	1	1	61	0	1	0	0	0	0	0	0	0	7974	1160	40	4		4	ITIH2	10	7772360	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26925	7772360	127762387	3933	72178											
TAF3	83860	broad.mit.edu	37	chr10	8006869	8006869	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccgataactcatggacaAtggatgcctccattgatgag	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8006869	G	G	8006869	3	3	61	1	0	0	0	0	1	0	0	0	15644	101	4	5	1406	5	TAF3	10	8006869	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	234509	8006869	127527878	3934	72179											
GATA3	2625	broad.mit.edu	37	chr10	8100536	8100536	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacccatcgctgtccaccccAggctcggccggctcggcccg	12	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8100536	T	T	8100536	2	4	61	1	0	0	0	0	0	0	0	1	6317	175	7	5		5	GATA3	10	8100536	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	93667	8100536	127434211	3935	72180											
CELF2	10659	broad.mit.edu	37	chr10	11112293	11112294	+	Intron	DNP	GG	AT	AT													accagcggtggggcgaggctGgagaggatgcgggcacccat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	11112294	AT	AT	11112293	1	1	61	0	1	0	0	0	0	0	0	0	3246	1363	47	4		4	CELF2	10	11112293	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	3011757	11112293	124422454	3936	72181											
USP6NL	9712	broad.mit.edu	37	chr10	11531029	11531029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatgtaactcttgcaagCatctttggttttgttttaat	7	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11531029	A	A	11531029	1	1	61	0	1	0	0	0	0	0	0	0	17214	725	25	3		3	USP6NL	10	11531029	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	418736	11531029	124003718	3937	72182											
DHTKD1	55526	broad.mit.edu	37	chr10	12131232	12131232	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacaactcagcccagccggGggacagggtcatttgcttac	12	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12131232	A	A	12131232	3	1	61	1	0	0	0	0	1	0	0	0	4540	1232	43	4	983	4	DHTKD1	10	12131232	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	600203	12131232	123403515	3938	72183											
MCM10	55388	broad.mit.edu	37	chr10	13217350	13217350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgcttaaacccaggagatGgaggttgcagtgatcccaga	12	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13217350	T	T	13217350	1	4	61	0	1	0	0	0	0	0	0	0	9478	1363	47	2		2	MCM10	10	13217350	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1086118	13217350	122317397	3939	72184											
PRPF18	8559	broad.mit.edu	37	chr10	13628907	13628907	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggccaccacaggcgccccGggccactctcttccctcatc	8	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13628907	A	A	13628907	1	1	61	0	1	0	0	0	0	0	0	0	12669	1131	39	4		4	PRPF18	10	13628907	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	411557	13628907	121905840	3940	72185											
FRMD4A	55691	broad.mit.edu	37	chr10	13789644	13789644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtccaggctggcacgtgGgagctggtggagggagggta	20	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13789644	T	T	13789644	1	4	61	0	1	0	0	0	0	0	0	0	6111	1247	43	2		2	FRMD4A	10	13789644	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	160737	13789644	121745103	3941	72186											
FRMD4A	55691	broad.mit.edu	37	chr10	13994464	13994464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagctaagatggcaccactAcattccagcccaggtgacag	10	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13994464	G	G	13994464	1	3	61	0	1	0	0	0	0	0	0	0	6111	406	14	5		5	FRMD4A	10	13994464	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	204820	13994464	121540283	3942	72187											
FAM107B	83641	broad.mit.edu	37	chr10	14709796	14709796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattaatatgagatcaagacTtgaaaaacttaaaccacacc	4	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14709796	A	A	14709796	1	1	61	0	1	0	0	0	0	0	0	0	5436	1624	56	5		5	FAM107B	10	14709796	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	715332	14709796	120824951	3943	72188											
ACBD7	414149	broad.mit.edu	37	chr10	15060056	15060056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaggcccagtacctgcccCcggagtgcaaaagctccatt	10	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15060056	A	A	15060056	3	1	61	1	0	0	0	0	1	0	0	0	127	638	22	2		2	ACBD7	10	15060056	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	350260	15060056	120474691	3944	72189											
ACBD7	414149	broad.mit.edu	37	chr10	15082105	15082105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatggacttactctttgtcCccatgacaacttccagtcct	5	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15082105	A	A	15082105	1	1	61	0	1	0	0	0	0	0	0	0	127	638	22	2		2	ACBD7	10	15082105	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22049	15082105	120452642	3945	72190											
ITGA8	8516	broad.mit.edu	37	chr10	15561210	15561210	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcctccataattgtctttTaaaatccctaactgtatccc	3	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15561210	C	C	15561210	1	2	61	0	1	0	0	0	0	0	0	0	7952	1769	61	5		5	ITGA8	10	15561210	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	479105	15561210	119973537	3946	72191											
ITGA8	8516	broad.mit.edu	37	chr10	15614378	15614378	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattgtgcagctgtaaacaAgtgacatgttatctaatgac	8	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15614378	C	C	15614378	1	2	61	0	1	0	0	0	0	0	0	0	7952	87	3	5		5	ITGA8	10	15614378	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	53168	15614378	119920369	3947	72192											
ITGA8	8516	broad.mit.edu	37	chr10	15646154	15646154	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccttcttaacatttacTtgacttcaaaaatataccta	3	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15646154	G	G	15646154	1	3	61	0	1	0	0	0	0	0	0	0	7952	1624	56	5		5	ITGA8	10	15646154	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31776	15646154	119888593	3948	72193											
ITGA8	8516	broad.mit.edu	37	chr10	15725838	15725838	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacgcttttgacttgctgtCacatcaagacacctgtaagg	8	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15725838	A	A	15725838	1	1	61	0	1	0	0	0	0	0	0	0	7952	841	29	3		3	ITGA8	10	15725838	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79684	15725838	119808909	3949	72194											
PTER	9317	broad.mit.edu	37	chr10	16528617	16528617	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgtcacacctggatagGtaagtaggctgtcttacaaa	10	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16528617	T	T	16528617	5	4	61	1	0	0	0	0	0	0	1	0	12845	1275	44	3	705	3	PTER	10	16528617	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	802779	16528617	119006130	3950	72195											
CUBN	8029	broad.mit.edu	37	chr10	16932541	16932541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacacctagcacggacataCacagaactttaatgctcaag	6	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16932541	A	A	16932541	1	1	61	0	1	0	0	0	0	0	0	0	4084	493	17	3		3	CUBN	10	16932541	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	403924	16932541	118602206	3951	72196											
CUBN	8029	broad.mit.edu	37	chr10	16960652	16960652	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggccttgaatcccacatgTgtggggctgttgtcagatcg	13	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16960652	A	A	16960652	2	1	61	1	0	0	0	0	0	0	0	1	4084	1683	59	5		5	CUBN	10	16960652	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	28111	16960652	118574095	3952	72197											
CUBN	8029	broad.mit.edu	37	chr10	16970062	16970062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgacttgtcttgtgtcctGgtgcccaaaaacattatatt	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16970062	T	T	16970062	1	4	61	0	1	0	0	0	0	0	0	0	4084	1363	47	2		2	CUBN	10	16970062	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9410	16970062	118564685	3953	72198											
CUBN	8029	broad.mit.edu	37	chr10	16970399	16970399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagctcacacatttttctcAgaacatcaggactcgtagga	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16970399	T	T	16970399	1	4	61	0	1	0	0	0	0	0	0	0	4084	203	7	5		5	CUBN	10	16970399	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	337	16970399	118564348	3954	72199											
ST8SIA6	338596	broad.mit.edu	37	chr10	17368936	17368936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggtgaaaatatacaatGgatatctttacactatcccc	5	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17368936	T	T	17368936	1	4	61	0	1	0	0	0	0	0	0	0	15354	1363	47	2		2	ST8SIA6	10	17368936	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	398537	17368936	118165811	3955	72200											
ST8SIA6	338596	broad.mit.edu	37	chr10	17373409	17373409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaacctttactcaccaCtggaaacatatgaaaaatgt	5	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17373409	A	A	17373409	3	1	61	1	0	0	0	0	1	0	0	0	15354	565	20	3	692	3	ST8SIA6	10	17373409	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4473	17373409	118161338	3956	72201											
ST8SIA6	338596	broad.mit.edu	37	chr10	17437860	17437861	+	Intron	INS	-	A	A													cattacactccagcctgggcINSaacaagagcgaaacaaaaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17437861	A	A	17437860	6	5	61	0	1	1	1	0	0	0	0	0	15354	725	25	0		0	ST8SIA6	10	17437860	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	64451	17437860	118096887	3957	72202											
SLC39A12	221074	broad.mit.edu	37	chr10	18242350	18242350	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccggcagacctgctacagGttctctctgctggtgaccac	10	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18242350	A	A	18242350	3	1	61	1	0	0	0	0	1	0	0	0	14729	1261	44	4	147	4	SLC39A12	10	18242350	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	804490	18242350	117292397	3958	72203											
SLC39A12	221074	broad.mit.edu	37	chr10	18331665	18331665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactcatgttcaaacacaacGaccctggatgatgtttctcc	7	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18331665	T	T	18331665	3	4	61	1	0	0	0	0	1	0	0	0	14729	1058	37	3	2025	3	SLC39A12	10	18331665	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	89315	18331665	117203082	3959	72204											
CACNB2	783	broad.mit.edu	37	chr10	18569360	18569360	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatttgaacacgttgagcCtggtcctaaagtctactatt	8	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18569360	A	A	18569360	1	1	61	0	1	0	0	0	0	0	0	0	2579	696	24	2		2	CACNB2	10	18569360	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	237695	18569360	116965387	3960	72205											
CACNB2	783	broad.mit.edu	37	chr10	18795324	18795324	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaccataatgaattaTgtttactgaataatataaat	3	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18795324	C	C	18795324	1	2	61	0	1	0	0	0	0	0	0	0	2579	1479	51	5		5	CACNB2	10	18795324	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	225964	18795324	116739423	3961	72206											
CACNB2	783	broad.mit.edu	37	chr10	18807514	18807514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaactggtatacactgCttcgtcctttttctgttttg	7	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18807514	T	T	18807514	1	4	61	0	1	0	0	0	0	0	0	0	2579	812	28	4		4	CACNB2	10	18807514	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12190	18807514	116727233	3962	72207											
PLXDC2	84898	broad.mit.edu	37	chr10	20300194	20300194	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagatgcaggaggcctccgTtctcctggtggctcatggag	15	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20300194	G	G	20300194	1	3	61	0	1	0	0	0	0	0	0	0	12213	1740	60	5		5	PLXDC2	10	20300194	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1492680	20300194	115234553	3963	72208											
PLXDC2	84898	broad.mit.edu	37	chr10	20435239	20435240	+	Intron	INS	-	T	T													tactgtcttcttttgctctaINSttttttttgttttctcttct					rs142107824	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20435240	T	T	20435239	6	5	61	0	1	1	1	0	0	0	0	0	12213	464	16	0		0	PLXDC2	10	20435239	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	135045	20435239	115099508	3964	72209											
PLXDC2	84898	broad.mit.edu	37	chr10	20465878	20465878	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attattaaaatgctgttgttTtgtaagcgaggaaaggttaa	10	2	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20465878	G	G	20465878	1	3	61	0	1	0	0	0	0	0	0	0	12213	1856	64	5		5	PLXDC2	10	20465878	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	30639	20465878	115068869	3965	72210											
PLXDC2	84898	broad.mit.edu	37	chr10	20506404	20506404	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accagtggaaacttcttctcGaaccaccacaaccgtaggag	8	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20506404	C	C	20506404	3	2	61	1	0	0	0	0	1	0	0	0	12213	1058	37	4	1214	4	PLXDC2	10	20506404	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40526	20506404	115028343	3966	72211											
PLXDC2	84898	broad.mit.edu	37	chr10	20511930	20511930	+	Intron	DEL	G	-	-													gaggaggaagaagaggagaaGggacaggaaagagaaaggaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20511930	-	-	20511930	6	5	61	0	1	1	0	1	0	0	0	0	12213	1015	35	0		0	PLXDC2	10	20511930	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	5526	20511930	115022817	3967	72212											
NEBL	10529	broad.mit.edu	37	chr10	21101656	21101656	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctagagcaagcatgatcTtttcgaccacacacaccggc	8	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21101656	C	C	21101656	1	2	61	0	1	0	0	0	0	0	0	0	10398	1624	56	5		5	NEBL	10	21101656	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	589726	21101656	114433091	3968	72213											
MLLT10	8028	broad.mit.edu	37	chr10	21962540	21962540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagctttgaaaattcacctgGagatttgggtaattccagcc	9	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21962540	T	T	21962540	3	4	61	1	0	0	0	0	1	0	0	0	9719	1174	41	3	1351	3	MLLT10	10	21962540	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	860884	21962540	113572207	3969	72214											
DNAJC1	64215	broad.mit.edu	37	chr10	22209839	22209839	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttctcacccgcctgtagTagaatacaggctgtcgccaa	8	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22209839	C	C	22209839	3	2	61	1	0	0	0	0	1	0	0	0	4668	1638	57	5	1275	5	DNAJC1	10	22209839	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	247299	22209839	113324908	3970	72215											
SPAG6	9576	broad.mit.edu	37	chr10	22653940	22653940	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcttgtttattcattggcaGaacagaatgtaagaattaaa	8	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22653940	T	T	22653940	4	4	61	1	0	0	0	0	0	1	0	0	15098	943	33	3	290	3	SPAG6	10	22653940	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	444101	22653940	112880807	3971	72216											
SPAG6	9576	broad.mit.edu	37	chr10	22676834	22676834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgaagcagagatttttcCagttgtacttacctgtctga	9	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22676834	A	A	22676834	3	1	61	1	0	0	0	0	1	0	0	0	15098	594	21	2	783	2	SPAG6	10	22676834	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22894	22676834	112857913	3972	72217											
SPAG6	9576	broad.mit.edu	37	chr10	22690312	22690312	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaacacggggtcatggtTttactgcttaactctcacca	8	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22690312	A	A	22690312	1	1	61	0	1	0	0	0	0	0	0	0	15098	1856	64	5		5	SPAG6	10	22690312	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13478	22690312	112844435	3973	72218											
KIAA1217	56243	broad.mit.edu	37	chr10	24036445	24036445	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaccacacatgagcctcttGagtagggccaggacatgtca	11	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24036445	A	A	24036445	1	1	61	0	1	0	0	0	0	0	0	0	8286	1305	45	4		4	KIAA1217	10	24036445	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1346133	24036445	111498302	3974	72219											
KIAA1217	56243	broad.mit.edu	37	chr10	24763057	24763057	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgggcagctctacagGggtcaaaccgacagaataaa	11	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24763057	T	T	24763057	1	4	61	0	1	0	0	0	0	0	0	0	8286	1247	43	2		2	KIAA1217	10	24763057	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	726612	24763057	110771690	3975	72220											
KIAA1217	56243	broad.mit.edu	37	chr10	24821924	24821924	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgttctagacagtgagggAccatacgatctgtccctttt	10	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24821924	G	G	24821924	1	3	61	0	1	0	0	0	0	0	0	0	8286	290	10	5		5	KIAA1217	10	24821924	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	58867	24821924	110712823	3976	72221											
KIAA1217	56243	broad.mit.edu	37	chr10	24825837	24825837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggtaacgtggcaactGcacatttgccacacggttgg	12	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24825837	T	T	24825837	1	4	61	0	1	0	0	0	0	0	0	0	8286	1334	46	3		3	KIAA1217	10	24825837	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3913	24825837	110708910	3977	72222											
KIAA1217	56243	broad.mit.edu	37	chr10	24833666	24833666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaaacacgaggctgctgGgtcagccatgtgctgttgaa	15	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24833666	T	T	24833666	1	4	61	0	1	0	0	0	0	0	0	0	8286	1247	43	2		2	KIAA1217	10	24833666	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7829	24833666	110701081	3978	72223											
GPR158	57512	broad.mit.edu	37	chr10	25465275	25465275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagggccggggggcagggGggaaggcaaaagcgaagctt	23	6	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25465275	T	T	25465275	1	4	61	0	1	0	0	0	0	0	0	0	6728	1247	43	2		2	GPR158	10	25465275	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	631609	25465275	110069472	3979	72224											
GPR158	57512	broad.mit.edu	37	chr10	25770300	25770300	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagatgagtcaaatagagtCgagtatatgtcccaagaaga	11	5	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25770300	A	A	25770300	1	1	61	0	1	0	0	0	0	0	0	0	6728	899	31	3		3	GPR158	10	25770300	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	305025	25770300	109764447	3980	72225											
MYO3A	53904	broad.mit.edu	37	chr10	26455078	26455078	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccattttggaaaaagctggtCtcgataactgggctcttgga	11	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26455078	G	G	26455078	3	3	61	1	0	0	0	0	1	0	0	0	10170	913	32	4	3180	4	MYO3A	10	26455078	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	684778	26455078	109079669	3981	72226											
MYO3A	53904	broad.mit.edu	37	chr10	26471891	26471892	+	Intron	DEL	GT	-	-													taagcgagatgaccaggcagGtgtgtgtgtaatctaactcc					rs141478506		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26471892	-	-	26471891	6	5	61	0	1	1	0	1	0	0	0	0	10170	1276	44	0		0	MYO3A	10	26471891	Intron	DEL	GT	TCGA-17-Z031-01A-01W-0746-08	16813	26471891	109062856	3982	72227											
GAD2	2572	broad.mit.edu	37	chr10	26512780	26512780	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggcatttattttcactgGaggcaatcctgattctggta	10	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26512780	T	T	26512780	1	4	61	0	1	0	0	0	0	0	0	0	6240	1189	41	3		3	GAD2	10	26512780	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40889	26512780	109021967	3983	72228											
GAD2	2572	broad.mit.edu	37	chr10	26538675	26538675	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcggctcatcatgggaacAaggggcctgcctgaggacat	15	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26538675	C	C	26538675	1	2	61	0	1	0	0	0	0	0	0	0	6240	145	5	5		5	GAD2	10	26538675	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	25895	26538675	108996072	3984	72229											
APBB1IP	54518	broad.mit.edu	37	chr10	26781334	26781334	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttctgactcaggtaaacTtccctttttaactggcaaat	5	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26781334	G	G	26781334	1	3	61	0	1	0	0	0	0	0	0	0	762	1624	56	5		5	APBB1IP	10	26781334	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	242659	26781334	108753413	3985	72230											
APBB1IP	54518	broad.mit.edu	37	chr10	26848943	26848943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacataaatcacatatattGttagagattttttttaaatt	3	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26848943	T	T	26848943	1	4	61	0	1	0	0	0	0	0	0	0	762	1392	48	3		3	APBB1IP	10	26848943	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67609	26848943	108685804	3986	72231											
ANKRD26	22852	broad.mit.edu	37	chr10	27301833	27301833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcaagtagttctccatgCtattatttgaagcccgtgga	9	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27301833	A	A	27301833	3	1	61	1	0	0	0	0	1	0	0	0	654	797	28	3	213	3	ANKRD26	10	27301833	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	452890	27301833	108232914	3987	72232											
PTCHD3	374308	broad.mit.edu	37	chr10	27692304	27692304	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctgtaaatttggagggaAaaatcatggaatttgtggtg	12	3	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27692304	C	C	27692304	1	2	61	0	1	0	0	0	0	0	0	0	12840	29	1	5		5	PTCHD3	10	27692304	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	390471	27692304	107842443	3988	72233											
KIAA1462	57608	broad.mit.edu	37	chr10	30336463	30336463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcacagtgaaacttacccCgcctccgaggttctggaagc	10	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30336463	A	A	30336463	2	1	61	1	0	0	0	0	0	0	0	1	8304	639	23	1		1	KIAA1462	10	30336463	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2644159	30336463	105198284	3989	72234											
KIAA1462	57608	broad.mit.edu	37	chr10	30362576	30362577	+	Intron	INS	-	TCCT	TCCT													tggacaggatagcaagattgINStccttccttccttccttcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCCT	30362577	TCCT	TCCT	30362576	6	5	61	0	1	1	1	0	0	0	0	0	8304	1392	48	0		0	KIAA1462	10	30362576	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	26113	30362576	105172171	3990	72235											
MTPAP	55149	broad.mit.edu	37	chr10	30653420	30653420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgctgcccaagcctggGtactcctgggggtcccgcat	14	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30653420	T	T	30653420	1	4	61	0	1	0	0	0	0	0	0	0	10050	1276	44	3		3	MTPAP	10	30653420	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	290844	30653420	104881327	3991	72236											
MTPAP	55149	broad.mit.edu	37	chr10	30654300	30654300	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctccatggatccctgcaGggcctgatgagtctacccac	9	15	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30654300	T	T	30654300	1	4	61	1	0	0	0	0	0	0	0	0	10050	1015	35	2		2	MTPAP	10	30654300	Translation_Start_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	880	30654300	104880447	3992	72237											
MAP3K8	1326	broad.mit.edu	37	chr10	30736621	30736621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactgtgtatcagaatgctGctaaaataaccagcttccta	6	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30736621	T	T	30736621	1	4	61	0	1	0	0	0	0	0	0	0	9348	1334	46	3		3	MAP3K8	10	30736621	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	82321	30736621	104798126	3993	72238											
ZEB1	6935	broad.mit.edu	37	chr10	31812931	31812931	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgactctgattctacacCgcccaaaaagaaaatgcgga	8	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31812931	T	T	31812931	3	4	61	1	0	0	0	0	1	0	0	0	17749	652	23	4	2716	4	ZEB1	10	31812931	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1076310	31812931	103721816	3994	72239											
KIF5B	3799	broad.mit.edu	37	chr10	32337570	32337570	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcatataatatatttaatCctcaaaatagtatacctagt	2	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32337570	A	A	32337570	1	1	61	0	1	0	0	0	0	0	0	0	8376	870	30	3		3	KIF5B	10	32337570	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	524639	32337570	103197177	3995	72240											
CCDC7	221016	broad.mit.edu	37	chr10	32806872	32806872	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttttttggtttatttttcaGagctgtaaatgatcaagttt	7	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32806872	T	T	32806872	5	4	61	1	0	0	0	0	0	0	1	0	2870	956	33	3	910	3	CCDC7	10	32806872	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	469302	32806872	102727875	3996	72241											
ITGB1	3688	broad.mit.edu	37	chr10	33233908	33233908	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actaaagttccacaaagaagCcagaaagctgccattactcc	6	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33233908	T	T	33233908	1	4	61	0	1	0	0	0	0	0	0	0	7960	754	26	4		4	ITGB1	10	33233908	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	427036	33233908	102300839	3997	72242											
PARD3	56288	broad.mit.edu	37	chr10	34635247	34635247	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcactagctgaatttaGggatttttttggtttgagtt	11	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34635247	C	C	34635247	1	2	61	0	1	0	0	0	0	0	0	0	11537	1015	35	4		4	PARD3	10	34635247	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1401339	34635247	100899500	3998	72243											
CCNY	219771	broad.mit.edu	37	chr10	35842023	35842023	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcggattgttttaggggCgatcctgctggcctccaagg	15	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35842023	T	T	35842023	3	4	61	1	0	0	0	0	1	0	0	0	2966	768	27	4	686	4	CCNY	10	35842023	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1206776	35842023	99692724	3999	72244											
ANKRD30A	91074	broad.mit.edu	37	chr10	37414841	37414841	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctggggatcttagaaagatCcataaagctgcctcccgggg	12	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37414841	A	A	37414841	1	1	61	0	1	0	0	0	0	0	0	0	658	870	30	3		3	ANKRD30A	10	37414841	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1572818	37414841	98119906	4000	72245											
ANKRD30A	91074	broad.mit.edu	37	chr10	37422768	37422768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgttggtacatgtaaatGgttaattctacaatgacagg	10	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37422768	T	T	37422768	1	4	61	0	1	0	0	0	0	0	0	0	658	1363	47	2		2	ANKRD30A	10	37422768	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7927	37422768	98111979	4001	72246											
ANKRD30A	91074	broad.mit.edu	37	chr10	37423101	37423101	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaagctagactagttagaagGagtattgggtccaggattct	12	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37423101	C	C	37423101	1	2	61	0	1	0	0	0	0	0	0	0	658	1189	41	4		4	ANKRD30A	10	37423101	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	333	37423101	98111646	4002	72247											
ANKRD30A	91074	broad.mit.edu	37	chr10	37433998	37433998	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctcgggtattgtgtattaTtgatgttattctctaaaaat	7	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37433998	A	A	37433998	1	1	61	0	1	0	0	0	0	0	0	0	658	1508	52	5		5	ANKRD30A	10	37433998	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10897	37433998	98100749	4003	72248											
ANKRD30A	91074	broad.mit.edu	37	chr10	37451510	37451510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcagttaaatactatcacGgcattcatttgtggttggct	9	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37451510	T	T	37451510	1	4	61	0	1	0	0	0	0	0	0	0	658	1131	39	1		1	ANKRD30A	10	37451510	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17512	37451510	98083237	4004	72249											
ANKRD30A	91074	broad.mit.edu	37	chr10	37490217	37490217	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtacccaaggctacacatCaaaaagaaatggataaaata	7	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37490217	A	A	37490217	3	1	61	1	0	0	0	0	1	0	0	0	658	827	29	3	2787	3	ANKRD30A	10	37490217	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38707	37490217	98044530	4005	72250											
ZNF37A	7587	broad.mit.edu	37	chr10	38397688	38397689	+	Intron	INS	-	A	A													ggataaattcctggacacttINSacaccctctcaagtctaaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38397689	A	A	38397688	6	5	61	0	1	1	1	0	0	0	0	0	17998	1769	61	0		0	ZNF37A	10	38397688	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	907471	38397688	97137059	4006	72251											
BMS1	9790	broad.mit.edu	37	chr10	43293750	43293750	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttcatctgtggctgcCctgccctctcaatgcctaac	6	17	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43293750	T	T	43293750	1	4	61	0	1	0	0	0	0	0	0	0	1478	638	22	4		4	BMS1	10	43293750	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4896062	43293750	92240997	4007	72252											
ANUBL1	93550	broad.mit.edu	37	chr10	46159186	46159186	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatccattactttgactttTctagttcttctaaaatatgt	3	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46159186	C	C	46159186	1	2	61	0	1	0	0	0	0	0	0	0	713	1798	62	5		5	ANUBL1	10	46159186	5'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2865436	46159186	89375561	4008	72253											
FAM21C	253725	broad.mit.edu	37	chr10	46250568	46250568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccttctaaaacacgtatGtgttcctgcctccgtttcta	5	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46250568	T	T	46250568	1	4	61	0	1	0	0	0	0	0	0	0	5589	1392	48	3		3	FAM21C	10	46250568	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	91382	46250568	89284179	4009	72254											
ANXA8	653145	broad.mit.edu	37	chr10	47037056	47037056	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgttctacataccattaAtagatcaactcttctacagc	3	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47037056	C	C	47037056	1	2	61	0	1	0	0	0	0	0	0	0	724	116	4	5		5	ANXA8	10	47037056	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	786488	47037056	88497691	4010	72255											
PPYR1	5540	broad.mit.edu	37	chr10	47084533	47084533	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttccatctgcattcgtgctGgtcagcccctctgctctggg	11	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47084533	C	C	47084533	1	2	61	0	1	0	0	0	0	0	0	0	12517	1363	47	4		4	PPYR1	10	47084533	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47477	47084533	88450214	4011	72256											
ANXA8	653145	broad.mit.edu	37	chr10	47092609	47092609	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgggggttccacaaagcCtttagggttgcaggaccaca	12	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47092609	T	T	47092609	1	4	61	0	1	0	0	0	0	0	0	0	724	696	24	4		4	ANXA8	10	47092609	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8076	47092609	88442138	4012	72257											
ANXA8	653145	broad.mit.edu	37	chr10	47124583	47124584	+	Intron	DNP	GG	AA	AA													gatcagcacgtggacagcagGgccaactagggtccattgtt					rs147420428	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47124584	AA	AA	47124583	1	1	61	0	1	0	0	0	0	0	0	0	724	1247	43	4		4	ANXA8	10	47124583	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	31974	47124583	88410164	4013	72258											
C10orf71	118461	broad.mit.edu	37	chr10	50531556	50531556	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtcctcctgagcgcacagtCtctccctgccaggtccaggc	10	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50531556	A	A	50531556	2	1	61	1	0	0	0	0	0	0	0	1	1625	900	32	3		3	C10orf71	10	50531556	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3406973	50531556	85003191	4014	72259											
SLC18A3	6572	broad.mit.edu	37	chr10	50819662	50819662	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctagacccctacattgcCgtggtggccggcgcgctcac	12	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50819662	A	A	50819662	2	1	61	1	0	0	0	0	0	0	0	1	14540	639	23	1		1	SLC18A3	10	50819662	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	288106	50819662	84715085	4015	72260											
PCDH15	65217	broad.mit.edu	37	chr10	55581965	55581965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaacacctgttatacagaCacactctgtggacagaaatg	7	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55581965	A	A	55581965	3	1	61	1	0	0	0	0	1	0	0	0	11605	478	17	3	1956	3	PCDH15	10	55581965	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4762303	55581965	79952782	4016	72261											
PCDH15	65217	broad.mit.edu	37	chr10	55955422	55955422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgttacacaaacaagagCaaaatatgtatttaacttac	4	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55955422	A	A	55955422	1	1	61	0	1	0	0	0	0	0	0	0	11605	725	25	3		3	PCDH15	10	55955422	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	373457	55955422	79579325	4017	72262											
PCDH15	65217	broad.mit.edu	37	chr10	56129003	56129003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgttgatgcactggacCtgcaccacaatggagtgtat	10	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56129003	A	A	56129003	3	1	61	1	0	0	0	0	1	0	0	0	11605	680	24	2	7276	2	PCDH15	10	56129003	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	173581	56129003	79405744	4018	72263											
PCDH15	65217	broad.mit.edu	37	chr10	56269139	56269139	+	Intron	DEL	C	-	-													ctcattttctctcttgtctgCcaccatgaaagatgtgcttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56269139	-	-	56269139	6	5	61	0	1	1	0	1	0	0	0	0	11605	754	26	0		0	PCDH15	10	56269139	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	140136	56269139	79265608	4019	72264											
PCDH15	65217	broad.mit.edu	37	chr10	56359672	56359672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaagttgaggaaaagaGtgaggaagtggccactaagg	15	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56359672	T	T	56359672	1	4	61	0	1	0	0	0	0	0	0	0	11605	1044	36	3		3	PCDH15	10	56359672	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	90533	56359672	79175075	4020	72265											
PCDH15	65217	broad.mit.edu	37	chr10	56360684	56360684	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcactgttggaagggggtCactcagaaggggagatgtct	16	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56360684	G	G	56360684	1	3	61	0	1	0	0	0	0	0	0	0	11605	841	29	4		4	PCDH15	10	56360684	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1012	56360684	79174063	4021	72266											
PCDH15	65217	broad.mit.edu	37	chr10	56416325	56416326	+	Intron	INS	-	A	A													actagttgtgtacacatagtINSgggccactgctgtgcctgta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56416326	A	A	56416325	6	5	61	0	1	1	1	0	0	0	0	0	11605	1711	59	0		0	PCDH15	10	56416325	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	55641	56416325	79118422	4022	72267											
PCDH15	65217	broad.mit.edu	37	chr10	56416496	56416496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtgtgacctacccctgGggaatgggggtgcacagaca	14	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56416496	T	T	56416496	1	4	61	0	1	0	0	0	0	0	0	0	11605	1247	43	2		2	PCDH15	10	56416496	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	171	56416496	79118251	4023	72268											
IPMK	253430	broad.mit.edu	37	chr10	59956113	59956113	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactgtgatgcttttttgtAtatattttcctgtgacgcgc	9	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59956113	G	G	59956113	2	3	61	1	0	0	0	0	0	0	0	1	7862	456	16	5		5	IPMK	10	59956113	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3539617	59956113	75578634	4024	72269											
RTKN2	219790	broad.mit.edu	37	chr10	64005899	64005899	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcacaaatgtcaaaataTtaaaagcaaatgcatatccg	5	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64005899	C	C	64005899	1	2	61	0	1	0	0	0	0	0	0	0	13834	1508	52	5		5	RTKN2	10	64005899	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4049786	64005899	71528848	4025	72270											
ZNF365	22891	broad.mit.edu	37	chr10	64136068	64136068	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccataccagatttagaaGcttgtcatccttgagggccc	9	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64136068	A	A	64136068	3	1	61	1	0	0	0	0	1	0	0	0	17995	971	34	4	118	4	ZNF365	10	64136068	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	130169	64136068	71398679	4026	72271											
ZNF365	22891	broad.mit.edu	37	chr10	64158504	64158504	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttccttcagcttacAgacatctcctcaaataggaa	5	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64158504	T	T	64158504	2	4	61	1	0	0	0	0	0	0	0	1	17995	175	7	5		5	ZNF365	10	64158504	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	22436	64158504	71376243	4027	72272											
ZNF365	22891	broad.mit.edu	37	chr10	64260707	64260707	+	Intron	DEL	C	-	-													atccttttctgatcttcattCcccttcattaatatatctag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64260707	-	-	64260707	6	5	61	0	1	1	0	1	0	0	0	0	17995	870	30	0		0	ZNF365	10	64260707	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	102203	64260707	71274040	4028	72273											
ZNF365	22891	broad.mit.edu	37	chr10	64393475	64393475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctatgcctttgggtgatgGtggcagaaagtcagctggtg	15	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64393475	T	T	64393475	1	4	61	0	1	0	0	0	0	0	0	0	17995	1276	44	3		3	ZNF365	10	64393475	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132768	64393475	71141272	4029	72274											
NRBF2	29982	broad.mit.edu	37	chr10	64913808	64913808	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagttatggagcttgccaCcacatgcagaaactgctaca	9	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64913808	T	T	64913808	3	4	61	1	0	0	0	0	1	0	0	0	10736	507	18	4	708	4	NRBF2	10	64913808	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	520333	64913808	70620939	4030	72275											
LRRTM3	347731	broad.mit.edu	37	chr10	68686157	68686157	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgggatttatttgttcttgGagtgttctgcgtggctggca	14	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68686157	T	T	68686157	1	4	61	0	1	0	0	0	0	0	0	0	9128	1189	41	3		3	LRRTM3	10	68686157	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3772349	68686157	66848590	4031	72276											
CTNNA3	29119	broad.mit.edu	37	chr10	68979338	68979338	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgtattaggacatcagaTcacactttatctttctcccg	5	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68979338	G	G	68979338	1	3	61	0	1	0	0	0	0	0	0	0	4048	1450	50	5		5	CTNNA3	10	68979338	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	293181	68979338	66555409	4032	72277											
CTNNA3	29119	broad.mit.edu	37	chr10	69011415	69011415	+	Intron	DEL	G	-	-													ggaagtcaagatcaagggacGggggttggaaaactgctggt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69011415	-	-	69011415	6	5	61	0	1	1	0	1	0	0	0	0	4048	1131	39	0		0	CTNNA3	10	69011415	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	32077	69011415	66523332	4033	72278											
SIRT1	23411	broad.mit.edu	37	chr10	69666588	69666588	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccatctctctgtcacaaAttcatagccttgtcagataa	5	12	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69666588	G	G	69666588	2	3	61	1	0	0	0	0	0	0	0	1	14450	98	4	5		5	SIRT1	10	69666588	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	655173	69666588	65868159	4034	72279											
MYPN	84665	broad.mit.edu	37	chr10	69956992	69956992	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatagtccagcctcccctttCccccttcaaaaaaaaaaaat	2	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69956992	A	A	69956992	1	1	61	0	1	0	0	0	0	0	0	0	10192	870	30	3		3	MYPN	10	69956992	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	290404	69956992	65577755	4035	72280											
TET1	80312	broad.mit.edu	37	chr10	70332191	70332192	+	Nonsense_Mutation	DNP	GG	CT	CT													caactacgaaagacaaccaaGggagccaacaaaaatgtggc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	70332192	CT	CT	70332191	4	2	61	1	0	0	0	0	0	1	0	0	15891	991	35	4	98	4	TET1	10	70332191	Nonsense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	375199	70332191	65202556	4036	72281											
TET1	80312	broad.mit.edu	37	chr10	70381974	70381989	+	Intron	DEL	CCTTCCCTCCTTCCTC	-	-													ccttccttccttccttccttCcttccctccttcctcccttc					rs12777015	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70381989	-	-	70381974	6	5	61	0	1	1	0	1	0	0	0	0	15891	870	30	0		0	TET1	10	70381974	Intron	DEL	CCTTCCCTCCTTCCTC	TCGA-17-Z031-01A-01W-0746-08	49783	70381974	65152773	4037	72282											
DDX21	9188	broad.mit.edu	37	chr10	70726924	70726924	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatatgggatttgctgatcAagtggaagagattttaagtg	14	2	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70726924	T	T	70726924	3	4	61	1	0	0	0	0	1	0	0	0	4382	130	5	5	1077	5	DDX21	10	70726924	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	344950	70726924	64807823	4038	72283											
SUPV3L1	6832	broad.mit.edu	37	chr10	70958934	70958934	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttggttgctacagatgcaAttggcatgggacttaatttg	11	6	1	1	rs148715762		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70958934	T	T	70958934	3	4	61	1	0	0	0	0	1	0	0	0	15520	101	4	5	1317	5	SUPV3L1	10	70958934	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	232010	70958934	64575813	4039	72284											
TACR2	6865	broad.mit.edu	37	chr10	71164609	71164609	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacatgagttttggtgggGgcaagcaaaccatacccaaa	10	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71164609	T	T	71164609	2	4	61	1	0	0	0	0	0	0	0	1	15625	1219	43	2		2	TACR2	10	71164609	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	205675	71164609	64370138	4040	72285											
COL13A1	1305	broad.mit.edu	37	chr10	71654423	71654423	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taactctctcatctccgtctCtttgtagggaccccagggac	8	14	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71654423	A	A	71654423	1	1	61	0	1	0	0	0	0	0	0	0	3702	928	32	3		3	COL13A1	10	71654423	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	489814	71654423	63880324	4041	72286											
TYSND1	219743	broad.mit.edu	37	chr10	71899571	71899571	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggagatgagaggcagcCtgggcccctgcaggggctgg	21	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71899571	A	A	71899571	1	1	61	0	1	0	0	0	0	0	0	0	16943	696	24	2		2	TYSND1	10	71899571	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	245148	71899571	63635176	4042	72287											
KIAA1274	27143	broad.mit.edu	37	chr10	72289436	72289436	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagttgtctttccttttcCtacactttatgatacccttc	5	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72289436	G	G	72289436	1	3	61	0	1	0	0	0	0	0	0	0	8290	696	24	4		4	KIAA1274	10	72289436	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	389865	72289436	63245311	4043	72288											
C10orf27	219793	broad.mit.edu	37	chr10	72531449	72531449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatcaatgagatgcctactCtgtgcctctctgccaggcac	8	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72531449	T	T	72531449	1	4	61	0	1	0	0	0	0	0	0	0	1611	928	32	4		4	C10orf27	10	72531449	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	242013	72531449	63003298	4044	72289											
UNC5B	219699	broad.mit.edu	37	chr10	73048253	73048253	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtgtgttggcacattgctCtgttctgcacacataactat	8	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73048253	T	T	73048253	1	4	61	0	1	0	0	0	0	0	0	0	17118	928	32	4		4	UNC5B	10	73048253	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	516804	73048253	62486494	4045	72290											
SLC29A3	55315	broad.mit.edu	37	chr10	73121684	73121684	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatcccaagcaacctgcttGatggtggccctgtctcctcc	9	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73121684	T	T	73121684	1	4	61	0	1	0	0	0	0	0	0	0	14650	1305	45	3		3	SLC29A3	10	73121684	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	73431	73121684	62413063	4046	72291											
CDH23	64072	broad.mit.edu	37	chr10	73195484	73195484	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcctgaggatggtggaGgaagccacttggctgtgctg	19	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73195484	C	C	73195484	1	2	61	0	1	0	0	0	0	0	0	0	3138	1015	35	4		4	CDH23	10	73195484	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	73800	73195484	62339263	4047	72292											
CDH23	64072	broad.mit.edu	37	chr10	73485098	73485098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacttctgggcagggccGgtgttccagggggtctgtcc	18	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73485098	T	T	73485098	1	4	61	0	1	0	0	0	0	0	0	0	3138	1131	39	1		1	CDH23	10	73485098	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	289614	73485098	62049649	4048	72293											
CDH23	64072	broad.mit.edu	37	chr10	73544806	73544806	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcaatgcacgcctcacCttcaacatcactgcgggcaa	9	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73544806	T	T	73544806	2	4	61	1	0	0	0	0	0	0	0	1	3138	668	24	4		4	CDH23	10	73544806	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	59708	73544806	61989941	4049	72294											
SPOCK2	9806	broad.mit.edu	37	chr10	73830120	73830120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagacagaggcaagctgggCcatgtggcagggcttgcaga	17	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73830120	A	A	73830120	3	1	61	1	0	0	0	0	1	0	0	0	15198	739	26	3	878	3	SPOCK2	10	73830120	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	285314	73830120	61704627	4050	72295											
ADK	132	broad.mit.edu	37	chr10	76104249	76104249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctttcaggggattgtatcAgatgcatactcatttccagt	9	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76104249	T	T	76104249	1	4	61	0	1	0	0	0	0	0	0	0	320	203	7	5		5	ADK	10	76104249	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2274129	76104249	59430498	4051	72296											
ADK	132	broad.mit.edu	37	chr10	76187486	76187487	+	Intron	DEL	TG	-	-													tttttgtatatgtatatgtaTgtgtgtgtgtgtgtgtgtgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76187487	-	-	76187486	6	5	61	0	1	1	0	1	0	0	0	0	320	1479	51	0		0	ADK	10	76187486	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	83237	76187486	59347261	4052	72297											
MYST4	23522	broad.mit.edu	37	chr10	76788500	76788500	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accagccccagtcccatcagGattgaggaggaggtcaagga	13	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76788500	A	A	76788500	2	1	61	1	0	0	0	0	0	0	0	1	10199	1165	41	4		4	MYST4	10	76788500	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	601014	76788500	58746247	4053	72298											
KCNMA1	3778	broad.mit.edu	37	chr10	78708918	78708918	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggcaatatggacactttGgggaagttatgaagcgtctc	12	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78708918	T	T	78708918	2	4	61	1	0	0	0	0	0	0	0	1	8143	1335	47	2		2	KCNMA1	10	78708918	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1920418	78708918	56825829	4054	72299											
KCNMA1	3778	broad.mit.edu	37	chr10	78771905	78771905	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattaatgaaacacgccagCattaatttcctttaatcttt	3	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78771905	A	A	78771905	1	1	61	0	1	0	0	0	0	0	0	0	8143	725	25	3		3	KCNMA1	10	78771905	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	62987	78771905	56762842	4055	72300											
KCNMA1	3778	broad.mit.edu	37	chr10	78844340	78844340	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagatccaaaagggccGtgaacagccacagactgcca	11	12	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78844340	T	T	78844340	1	4	61	0	1	0	0	0	0	0	0	0	8143	1160	40	3		3	KCNMA1	10	78844340	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	72435	78844340	56690407	4056	72301											
KCNMA1	3778	broad.mit.edu	37	chr10	78880746	78880746	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaccttgttttaagaataTtcagaaactgcaaaatttct	4	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78880746	C	C	78880746	3	2	61	1	0	0	0	0	1	0	0	0	8143	1493	52	5	3105	5	KCNMA1	10	78880746	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36406	78880746	56654001	4057	72302											
SH2D4B	387694	broad.mit.edu	37	chr10	82331116	82331116	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaattgctcattgtttttaTttcaagttctattgttaggt	6	4	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82331116	A	A	82331116	1	1	61	0	1	0	0	0	0	0	0	0	14349	1508	52	5		5	SH2D4B	10	82331116	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3450370	82331116	53203631	4058	72303											
SH2D4B	387694	broad.mit.edu	37	chr10	82363319	82363319	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggatctgggctaacgtgctGtcttcctctttccagtgcgc	11	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82363319	C	C	82363319	1	2	61	0	1	0	0	0	0	0	0	0	14349	1392	48	4		4	SH2D4B	10	82363319	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32203	82363319	53171428	4059	72304											
NRG3	10718	broad.mit.edu	37	chr10	83835943	83835943	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagccctccttcacttctTtgctaagtcttcacagtgca	6	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83835943	C	C	83835943	1	2	61	0	1	0	0	0	0	0	0	0	10744	1856	64	5		5	NRG3	10	83835943	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1472624	83835943	51698804	4060	72305											
NRG3	10718	broad.mit.edu	37	chr10	84360909	84360909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatggctgtgtagtgttcCatggtacatatgtaccacat	9	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84360909	A	A	84360909	1	1	61	0	1	0	0	0	0	0	0	0	10744	609	21	2		2	NRG3	10	84360909	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	524966	84360909	51173838	4061	72306											
NRG3	10718	broad.mit.edu	37	chr10	84446982	84446982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcatgttgagttgaacCaagttctgtgcttttactca	9	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84446982	A	A	84446982	1	1	61	0	1	0	0	0	0	0	0	0	10744	609	21	2		2	NRG3	10	84446982	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	86073	84446982	51087765	4062	72307											
NRG3	10718	broad.mit.edu	37	chr10	84450739	84450739	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccttcctcctctttctcCttcttctcctcctctttctt	0	19	7	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84450739	T	T	84450739	1	4	61	0	1	0	0	0	0	0	0	0	10744	696	24	4		4	NRG3	10	84450739	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3757	84450739	51084008	4063	72308											
NRG3	10718	broad.mit.edu	37	chr10	84498528	84498528	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgaaagctgccaaggacAgaagctgatggcagatgttg	13	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84498528	T	T	84498528	1	4	61	0	1	0	0	0	0	0	0	0	10744	203	7	5		5	NRG3	10	84498528	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	47789	84498528	51036219	4064	72309											
NRG3	10718	broad.mit.edu	37	chr10	84618406	84618406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttgacagggatctgtggGtggaatctacagagtgacag	14	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84618406	T	T	84618406	1	4	61	0	1	0	0	0	0	0	0	0	10744	1276	44	3		3	NRG3	10	84618406	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	119878	84618406	50916341	4065	72310											
NRG3	10718	broad.mit.edu	37	chr10	84733509	84733509	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggccctccataatgtatcCttcgtctcaactctgtacgt	6	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84733509	T	T	84733509	1	4	61	0	1	0	0	0	0	0	0	0	10744	696	24	4		4	NRG3	10	84733509	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	115103	84733509	50801238	4066	72311											
NRG3	10718	broad.mit.edu	37	chr10	84744866	84744866	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttcaggtattcatccagTggtttaaaaacccaacgaaa	6	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84744866	G	G	84744866	3	3	61	1	0	0	0	0	1	0	0	0	10744	1693	59	5	1874	5	NRG3	10	84744866	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	11357	84744866	50789881	4067	72312											
RGR	5995	broad.mit.edu	37	chr10	86012781	86012781	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacaggtgaggtgggaggaGcagcttcgaggctcctatcc	17	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86012781	A	A	86012781	1	1	61	0	1	0	0	0	0	0	0	0	13400	986	34	4		4	RGR	10	86012781	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1267915	86012781	49521966	4068	72313											
GRID1	2894	broad.mit.edu	37	chr10	87614385	87614385	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtggccctgcagaagaggAgaaaaacccattggaaaatc	11	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87614385	C	C	87614385	1	2	61	0	1	0	0	0	0	0	0	0	6837	319	11	5		5	GRID1	10	87614385	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1601604	87614385	47920362	4069	72314											
GRID1	2894	broad.mit.edu	37	chr10	87676222	87676222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcactcctgcaccagccCagagcaagattagacgcttg	9	15	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87676222	A	A	87676222	1	1	61	0	1	0	0	0	0	0	0	0	6837	609	21	2		2	GRID1	10	87676222	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61837	87676222	47858525	4070	72315											
GRID1	2894	broad.mit.edu	37	chr10	87952561	87952561	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtgatgttcacaccgatAtatgtggtgattccacagaa	10	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87952561	G	G	87952561	1	3	61	0	1	0	0	0	0	0	0	0	6837	464	16	5		5	GRID1	10	87952561	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	276339	87952561	47582186	4071	72316											
GRID1	2894	broad.mit.edu	37	chr10	88084362	88084362	+	Intron	DEL	C	-	-													gagaaaactgctttaaggaaCaaaaacctggacaaagaaaa					rs74888721		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88084362	-	-	88084362	6	5	61	0	1	1	0	1	0	0	0	0	6837	493	17	0		0	GRID1	10	88084362	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	131801	88084362	47450385	4072	72317											
OPN4	94233	broad.mit.edu	37	chr10	88416013	88416013	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgatcttgctggtgggactCacggggatgctgggcaacct	16	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88416013	T	T	88416013	2	4	61	1	0	0	0	0	0	0	0	1	10976	813	29	4		4	OPN4	10	88416013	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	331651	88416013	47118734	4073	72318											
LDB3	11155	broad.mit.edu	37	chr10	88445410	88445410	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctctctctgaccaccctgTcttctttgcccttttcctcc	4	19	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88445410	A	A	88445410	1	1	61	0	1	0	0	0	0	0	0	0	8769	1682	58	5		5	LDB3	10	88445410	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29397	88445410	47089337	4074	72319											
PAPSS2	9060	broad.mit.edu	37	chr10	89469183	89469183	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttttatcattagaaggagGctgggagatgtagtagaaag	14	2	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89469183	A	A	89469183	1	1	61	0	1	0	0	0	0	0	0	0	11529	1218	42	4		4	PAPSS2	10	89469183	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1023773	89469183	46065564	4075	72320											
PTEN	5728	broad.mit.edu	37	chr10	89685269	89685269	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtttgttttgttttaaGgtttttggattcaaagcata	9	2	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89685269	T	T	89685269	5	4	61	1	0	0	0	0	0	0	1	0	12844	1014	35	2	174	2	PTEN	10	89685269	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	216086	89685269	45849478	4076	72321											
PTEN	5728	broad.mit.edu	37	chr10	89692790	89692790	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcacaatatccttttgaaGaccataacccaccacagcta	4	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89692790	T	T	89692790	3	4	61	1	0	0	0	0	1	0	0	0	12844	942	33	3	292	3	PTEN	10	89692790	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7521	89692790	45841957	4077	72322											
LIPJ	142910	broad.mit.edu	37	chr10	90350367	90350367	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacgtggtatcttttcacaAtgatgtattttatccgaatt	6	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90350367	T	T	90350367	1	4	61	0	1	0	0	0	0	0	0	0	8899	116	4	5		5	LIPJ	10	90350367	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	657577	90350367	45184380	4078	72323											
STAMBPL1	57559	broad.mit.edu	37	chr10	90676579	90676579	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaggatggatccatgtacGtttgaccttttgggtttcag	11	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90676579	C	C	90676579	1	2	61	0	1	0	0	0	0	0	0	0	15369	1160	40	4		4	STAMBPL1	10	90676579	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	326212	90676579	44858168	4079	72324											
FAS	355	broad.mit.edu	37	chr10	90774097	90774097	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgattaaagatctcaaaAaagccaatctttgtactctt	4	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90774097	G	G	90774097	3	3	61	1	0	0	0	0	1	0	0	0	5738	15	1	5	932	5	FAS	10	90774097	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	97518	90774097	44760650	4080	72325											
PANK1	53354	broad.mit.edu	37	chr10	91352363	91352363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagagttctactttataCaccttgtatttcagaaaagg	8	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91352363	A	A	91352363	1	1	61	0	1	0	0	0	0	0	0	0	11510	493	17	3		3	PANK1	10	91352363	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	578266	91352363	44182384	4081	72326											
KIF20B	9585	broad.mit.edu	37	chr10	91505770	91505770	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttctcttattcccctcgCagggcatgcgatgggggtat	12	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91505770	T	T	91505770	1	4	61	0	1	0	0	0	0	0	0	0	8357	725	25	4		4	KIF20B	10	91505770	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	153407	91505770	44028977	4082	72327											
KIF20B	9585	broad.mit.edu	37	chr10	91514305	91514305	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatataatgctgatagaAagaaatggttagaagaaaaa	9	1	0	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91514305	G	G	91514305	3	3	61	1	0	0	0	0	1	0	0	0	8357	15	1	5	4356	5	KIF20B	10	91514305	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8535	91514305	44020442	4083	72328											
TNKS2	80351	broad.mit.edu	37	chr10	93600486	93600486	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgccaatgattgttatgGactctcttccttacttttac	5	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93600486	T	T	93600486	1	4	61	0	1	0	0	0	0	0	0	0	16444	1189	41	3		3	TNKS2	10	93600486	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2086181	93600486	41934261	4084	72329											
BTAF1	9044	broad.mit.edu	37	chr10	93711234	93711234	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttggccttaatatgggaGaagcaattggaatgagtact	11	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93711234	T	T	93711234	4	4	61	1	0	0	0	0	0	1	0	0	1545	943	33	3	493	3	BTAF1	10	93711234	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	110748	93711234	41823513	4085	72330											
EXOC6	54536	broad.mit.edu	37	chr10	94757306	94757306	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgcagatgctactggacAgtgagttaaaacaaataagc	9	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94757306	T	T	94757306	3	4	61	1	0	0	0	0	1	0	0	0	5350	188	7	5	2193	5	EXOC6	10	94757306	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1046072	94757306	40777441	4086	72331											
MYOF	26509	broad.mit.edu	37	chr10	95216615	95216615	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagcttatctattaaaacaAagttgaaaaaacaatgaagt	5	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95216615	T	T	95216615	1	4	61	0	1	0	0	0	0	0	0	0	10183	29	1	5		5	MYOF	10	95216615	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	459309	95216615	40318132	4087	72332											
PDE6C	5146	broad.mit.edu	37	chr10	95422264	95422264	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcaggacaaatcagtctgTtttgttcatacatcttagaa	6	7	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95422264	C	C	95422264	1	2	61	0	1	0	0	0	0	0	0	0	11741	1740	60	5		5	PDE6C	10	95422264	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	205649	95422264	40112483	4088	72333											
PLCE1	51196	broad.mit.edu	37	chr10	95966751	95966751	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattggtaaatgctttaatAaaaggtcaaatttactttca	5	5	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95966751	G	G	95966751	1	3	61	0	1	0	0	0	0	0	0	0	12129	377	13	5		5	PLCE1	10	95966751	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	544487	95966751	39567996	4089	72334											
PLCE1	51196	broad.mit.edu	37	chr10	96018805	96018805	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggacctgaaggatctgtttGatgtctatgcagtgccctgc	12	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96018805	T	T	96018805	3	4	61	1	0	0	0	0	1	0	0	0	12129	1290	45	3	4044	3	PLCE1	10	96018805	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	52054	96018805	39515942	4090	72335											
CYP2C18	1562	broad.mit.edu	37	chr10	96447796	96447796	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagctcctgggacagaacTtgacctgtccacgtggctgc	12	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96447796	G	G	96447796	1	3	61	0	1	0	0	0	0	0	0	0	4198	1624	56	5		5	CYP2C18	10	96447796	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	428991	96447796	39086951	4091	72336											
C10orf129	142827	broad.mit.edu	37	chr10	96955475	96955475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccccttcctggccctccCcaccttcatcacccgctttg	6	21	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96955475	A	A	96955475	1	1	61	0	1	0	0	0	0	0	0	0	1604	638	22	2		2	C10orf129	10	96955475	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	507679	96955475	38579272	4092	72337											
BLNK	29760	broad.mit.edu	37	chr10	97967483	97967483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctacctgaggatttgaagCttctcttggactgcttgggc	13	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97967483	A	A	97967483	1	1	61	0	1	0	0	0	0	0	0	0	1453	812	28	3		3	BLNK	10	97967483	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1012008	97967483	37567264	4093	72338											
DNTT	1791	broad.mit.edu	37	chr10	98087245	98087245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttctgtattatgaagacCttgtcagctgtgtgaccagg	11	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98087245	A	A	98087245	3	1	61	1	0	0	0	0	1	0	0	0	4720	681	24	2	921	2	DNTT	10	98087245	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	119762	98087245	37447502	4094	72339											
TLL2	7093	broad.mit.edu	37	chr10	98129814	98129814	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggccccagcgtctccgGgacttaccccagagccacag	10	20	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98129814	A	A	98129814	1	1	61	0	1	0	0	0	0	0	0	0	16069	1247	43	4		4	TLL2	10	98129814	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42569	98129814	37404933	4095	72340											
PIK3AP1	118788	broad.mit.edu	37	chr10	98357076	98357076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccttccttccttccttcCttccttccttctttccttcc	0	20	1	0	rs66650606		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98357076	T	T	98357076	1	4	61	0	1	0	0	0	0	0	0	0	12003	696	24	4		4	PIK3AP1	10	98357076	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	227262	98357076	37177671	4096	72341											
ZDHHC16	84287	broad.mit.edu	37	chr10	99212640	99212640	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgtaacagagcctgtgtcCcttcctcacaggtgtgtgct	10	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99212640	T	T	99212640	1	4	61	0	1	0	0	0	0	0	0	0	17732	638	22	4		4	ZDHHC16	10	99212640	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	855564	99212640	36322107	4097	72342											
MMS19	64210	broad.mit.edu	37	chr10	99225839	99225839	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgcagctcctcagcgagcTtgggtacgaggtggctgctg	15	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99225839	A	A	99225839	3	1	61	1	0	0	0	0	1	0	0	0	9766	1609	56	5	1569	5	MMS19	10	99225839	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13199	99225839	36308908	4098	72343											
HPS1	3257	broad.mit.edu	37	chr10	100189543	100189543	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccacgaagtgcacagcaCacaccgtctctgcagagctc	8	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100189543	T	T	100189543	1	4	61	0	1	0	0	0	0	0	0	0	7406	493	17	4		4	HPS1	10	100189543	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	963704	100189543	35345204	4099	72344											
HPSE2	60495	broad.mit.edu	37	chr10	100249983	100249983	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagagagggagagggtcagCgagagaacacatgctcaggt	16	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100249983	T	T	100249983	1	4	61	0	1	0	0	0	0	0	0	0	7412	783	27	4		4	HPSE2	10	100249983	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60440	100249983	35284764	4100	72345											
HPSE2	60495	broad.mit.edu	37	chr10	100807966	100807966	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatctgcacggaggatctgAttcatgagatctatactatt	8	8	5	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100807966	C	C	100807966	1	2	61	0	1	0	0	0	0	0	0	0	7412	348	12	5		5	HPSE2	10	100807966	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	557983	100807966	34726781	4101	72346											
CNNM1	26507	broad.mit.edu	37	chr10	101136906	101136907	+	Nonsense_Mutation	DNP	CA	AG	AG													ggcagcaacacccagctgtaCagcagcagcaacaacctcta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	101136907	AG	AG	101136906	4	1	61	1	0	0	0	0	0	1	0	0	3644	489	17	3	2297	3	CNNM1	10	101136906	Nonsense_Mutation	DNP	CA	TCGA-17-Z031-01A-01W-0746-08	328940	101136906	34397841	4102	72347											
GOT1	2805	broad.mit.edu	37	chr10	101163821	101163821	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaacaagtgtaaccttttcCgtaaactttactttttaaaa	3	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101163821	G	G	101163821	1	3	61	0	1	0	0	0	0	0	0	0	6643	667	23	4		4	GOT1	10	101163821	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26915	101163821	34370926	4103	72348											
NKX2-3	159296	broad.mit.edu	37	chr10	101294877	101294877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtcttcgagctggaacGcaggttcaagcagcagcggt	14	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101294877	A	A	101294877	3	1	61	1	0	0	0	0	1	0	0	0	10546	1087	38	4	500	4	NKX2-3	10	101294877	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	131056	101294877	34239870	4104	72349											
SLC25A28	81894	broad.mit.edu	37	chr10	101373554	101373554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgtgggcaggccctgcgCctgttgctgtgacgttcagc	17	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101373554	A	A	101373554	3	1	61	1	0	0	0	0	1	0	0	0	14605	739	26	3	687	3	SLC25A28	10	101373554	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	78677	101373554	34161193	4105	72350											
CUTC	51076	broad.mit.edu	37	chr10	101502997	101502997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattttttgtattcagatcGtgaaattgaggtgatgaagg	12	2	1	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101502997	T	T	101502997	3	4	61	1	0	0	0	0	1	0	0	0	4096	1145	40	3	295	3	CUTC	10	101502997	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	129443	101502997	34031750	4106	72351											
CUTC	51076	broad.mit.edu	37	chr10	101515326	101515326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctataaaatgaagcggcaGtaggagggcccatttaataa	11	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101515326	T	T	101515326	1	4	61	0	1	0	0	0	0	0	0	0	4096	1044	36	3		3	CUTC	10	101515326	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12329	101515326	34019421	4107	72352											
ABCC2	1244	broad.mit.edu	37	chr10	101590300	101590300	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaacaccatggacactccaAgctcttcctttgtttctttg	5	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101590300	T	T	101590300	1	4	61	0	1	0	0	0	0	0	0	0	53	87	3	5		5	ABCC2	10	101590300	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	74974	101590300	33944447	4108	72353											
CPN1	1369	broad.mit.edu	37	chr10	101808580	101808580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatacccaggtgctgtggCactaacagtgtagatacctg	11	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101808580	A	A	101808580	3	1	61	1	0	0	0	0	1	0	0	0	3841	710	25	3	219	3	CPN1	10	101808580	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	218280	101808580	33726167	4109	72354											
SCD	6319	broad.mit.edu	37	chr10	102114138	102114138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgggattctcctaataGggtgtctatcctcaagcctt	8	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102114138	T	T	102114138	1	4	61	0	1	0	0	0	0	0	0	0	13998	1015	35	2		2	SCD	10	102114138	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	305558	102114138	33420609	4110	72355											
WNT8B	7479	broad.mit.edu	37	chr10	102242450	102242450	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtgtccagctgcaactgCaagttccactggtgctgcgc	11	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102242450	A	A	102242450	4	1	61	1	0	0	0	0	0	1	0	0	17524	718	25	3	955	3	WNT8B	10	102242450	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	128312	102242450	33292297	4111	72356											
PAX2	5076	broad.mit.edu	37	chr10	102526579	102526579	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaccgaatcatacaccaTcacccagatccagcatcatt	3	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102526579	C	C	102526579	1	2	61	0	1	0	0	0	0	0	0	0	11573	1450	50	5		5	PAX2	10	102526579	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	284129	102526579	33008168	4112	72357											
PAX2	5076	broad.mit.edu	37	chr10	102583282	102583282	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgaaaagaaagtgaacGggcccaggtatgcatagttc	12	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102583282	A	A	102583282	1	1	61	0	1	0	0	0	0	0	0	0	11573	1131	39	4		4	PAX2	10	102583282	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	56703	102583282	32951465	4113	72358											
LBX1	10660	broad.mit.edu	37	chr10	102987515	102987515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgccgcttcttaggggtctGccgctgcccaaagatggtca	12	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102987515	T	T	102987515	3	4	61	1	0	0	0	0	1	0	0	0	8725	1328	46	3	491	3	LBX1	10	102987515	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	404233	102987515	32547232	4114	72359											
BTRC	8945	broad.mit.edu	37	chr10	103294633	103294633	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtagactttgatgacaagtAcattgtttctgcatctgggg	11	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103294633	T	T	103294633	3	4	61	1	0	0	0	0	1	0	0	0	1579	391	14	5	1351	5	BTRC	10	103294633	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	307118	103294633	32240114	4115	72360											
DPCD	25911	broad.mit.edu	37	chr10	103348126	103348126	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctggttggagagtctgcgGacagcccagaagactgcgct	16	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103348126	T	T	103348126	2	4	61	1	0	0	0	0	0	0	0	1	4751	1161	41	3		3	DPCD	10	103348126	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	53493	103348126	32186621	4116	72361											
MGEA5	10724	broad.mit.edu	37	chr10	103569910	103569910	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctagtttcaagtacatagtCaggaaaaatgaataaaaagt	7	4	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103569910	A	A	103569910	1	1	61	0	1	0	0	0	0	0	0	0	9648	841	29	3		3	MGEA5	10	103569910	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	221784	103569910	31964837	4117	72362											
NFKB2	4791	broad.mit.edu	37	chr10	104158449	104158449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgggaagggcccctgaGgcatgacacaataactgggc	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104158449	T	T	104158449	1	4	61	0	1	0	0	0	0	0	0	0	10471	1015	35	2		2	NFKB2	10	104158449	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	588539	104158449	31376298	4118	72363											
CYP17A1	1586	broad.mit.edu	37	chr10	104592983	104592983	+	Intron	DEL	G	-	-													ctcctgggttgggtgaggttGggagacattaataaggaagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104592983	-	-	104592983	6	5	61	0	1	1	0	1	0	0	0	0	4180	1363	47	0		0	CYP17A1	10	104592983	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	434534	104592983	30941764	4119	72364											
AS3MT	57412	broad.mit.edu	37	chr10	104638361	104638361	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgaaggagtctcattgAgggatactttctgttatctg	10	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104638361	T	T	104638361	1	4	61	0	1	0	0	0	0	0	0	0	1009	319	11	5		5	AS3MT	10	104638361	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	45378	104638361	30896386	4120	72365											
CNNM2	54805	broad.mit.edu	37	chr10	104679104	104679104	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacccgatggagctgcgcatCgtgcagaactgcggcacgga	15	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104679104	T	T	104679104	2	4	61	1	0	0	0	0	0	0	0	1	3645	874	31	4		4	CNNM2	10	104679104	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40743	104679104	30855643	4121	72366											
PDCD11	22984	broad.mit.edu	37	chr10	105198552	105198552	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagggtccatccagccacacGgtgtgttctttcggtgagtg	13	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105198552	C	C	105198552	3	2	61	1	0	0	0	0	1	0	0	0	11711	1116	39	4	4114	4	PDCD11	10	105198552	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	519448	105198552	30336195	4122	72367											
CALHM2	51063	broad.mit.edu	37	chr10	105209246	105209246	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggatttcagtggcgtgGgctgatgggaagtgctcttc	16	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105209246	T	T	105209246	2	4	61	1	0	0	0	0	0	0	0	1	2609	1219	43	2		2	CALHM2	10	105209246	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10694	105209246	30325501	4123	72368											
NEURL	9148	broad.mit.edu	37	chr10	105331682	105331682	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaggcgtagggacccctcTctgactggtgccaaggggaa	14	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105331682	A	A	105331682	1	1	61	0	1	0	0	0	0	0	0	0	10440	1566	54	5		5	NEURL	10	105331682	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	122436	105331682	30203065	4124	72369											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105372657	105372657	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccacagctggagagcccTgggccagcctggagacagtc	15	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105372657	A	A	105372657	3	1	61	1	0	0	0	0	1	0	0	0	14369	1580	55	5	2206	5	SH3PXD2A	10	105372657	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	40975	105372657	30162090	4125	72370											
SLK	9748	broad.mit.edu	37	chr10	105777729	105777730	+	Intron	INS	-	T	T													aatattatgtattctaatgcINSttttttcttagactgaattg					rs145780598	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105777730	T	T	105777729	6	5	61	0	1	1	1	0	0	0	0	0	14862	812	28	0		0	SLK	10	105777729	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	405072	105777729	29757018	4126	72371											
COL17A1	1308	broad.mit.edu	37	chr10	105794590	105794590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagctgaattcccagcctGtgctcggggcgctgtgggcc	16	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105794590	A	A	105794590	1	1	61	0	1	0	0	0	0	0	0	0	3706	1392	48	4		4	COL17A1	10	105794590	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16861	105794590	29740157	4127	72372											
COL17A1	1308	broad.mit.edu	37	chr10	105799241	105799241	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgggggccaggtgggcctGgtggtccctgaaggttgagt	19	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105799241	C	C	105799241	3	2	61	1	0	0	0	0	1	0	0	0	3706	1348	47	4	1691	4	COL17A1	10	105799241	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4651	105799241	29735506	4128	72373											
CCDC147	159686	broad.mit.edu	37	chr10	106139908	106139908	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatgaggctcagaagcagaGaaagatcatctttcatctgg	12	7	5	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106139908	T	T	106139908	3	4	61	1	0	0	0	0	1	0	0	0	2807	942	33	3	1329	3	CCDC147	10	106139908	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	340667	106139908	29394839	4129	72374											
SORCS3	22986	broad.mit.edu	37	chr10	106565247	106565247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacattttttttaaaaggtGggttggagtcaatttcatga	10	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106565247	T	T	106565247	1	4	61	0	1	0	0	0	0	0	0	0	15046	1363	47	2		2	SORCS3	10	106565247	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	425339	106565247	28969500	4130	72375											
SORCS3	22986	broad.mit.edu	37	chr10	106602702	106602702	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagttgggaagtgtggactGgaaggagcagaagatagtcc	17	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106602702	A	A	106602702	1	1	61	0	1	0	0	0	0	0	0	0	15046	1363	47	4		4	SORCS3	10	106602702	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37455	106602702	28932045	4131	72376											
SORCS3	22986	broad.mit.edu	37	chr10	106602756	106602756	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatgttaatgctctgggtgGaactgatggcccccacctgt	11	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106602756	T	T	106602756	1	4	61	0	1	0	0	0	0	0	0	0	15046	1189	41	3		3	SORCS3	10	106602756	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54	106602756	28931991	4132	72377											
SORCS3	22986	broad.mit.edu	37	chr10	106630483	106630483	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgatacggtcattttcccaTgttgagcatgacctcgcagg	11	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106630483	A	A	106630483	1	1	61	0	1	0	0	0	0	0	0	0	15046	1479	51	5		5	SORCS3	10	106630483	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27727	106630483	28904264	4133	72378											
SORCS3	22986	broad.mit.edu	37	chr10	106675748	106675748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtagctgtgctgattagGgccagaggttaaggaaaaaa	15	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106675748	T	T	106675748	1	4	61	0	1	0	0	0	0	0	0	0	15046	1247	43	2		2	SORCS3	10	106675748	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45265	106675748	28858999	4134	72379											
SORCS3	22986	broad.mit.edu	37	chr10	106778189	106778189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatccagatctcaaggttgGggagagttttatgcaaatca	10	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106778189	T	T	106778189	1	4	61	0	1	0	0	0	0	0	0	0	15046	1247	43	2		2	SORCS3	10	106778189	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	102441	106778189	28756558	4135	72380											
SORCS3	22986	broad.mit.edu	37	chr10	106822576	106822576	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtcctccatggcctggatCatgcttgtgaggcactttca	10	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106822576	A	A	106822576	1	1	61	0	1	0	0	0	0	0	0	0	15046	841	29	3		3	SORCS3	10	106822576	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44387	106822576	28712171	4136	72381											
SORCS3	22986	broad.mit.edu	37	chr10	106833540	106833540	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcagaaaagaattactcgTgtcacagtttgttcccaggt	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106833540	A	A	106833540	1	1	61	0	1	0	0	0	0	0	0	0	15046	1711	59	5		5	SORCS3	10	106833540	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10964	106833540	28701207	4137	72382											
SORCS3	22986	broad.mit.edu	37	chr10	106849559	106849559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccggattggataaggaggCggacctggtgcacatggagg	19	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106849559	A	A	106849559	3	1	61	1	0	0	0	0	1	0	0	0	15046	768	27	3	1077	3	SORCS3	10	106849559	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16019	106849559	28685188	4138	72383											
SORCS3	22986	broad.mit.edu	37	chr10	107022242	107022242	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaagagctggacacgcgGgtcataggtacatgctcctg	13	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107022242	T	T	107022242	2	4	61	1	0	0	0	0	0	0	0	1	15046	1219	43	2		2	SORCS3	10	107022242	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	172683	107022242	28512505	4139	72384											
SORCS3	22986	broad.mit.edu	37	chr10	107022998	107022998	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggcttggtatttagcagtGaataaaactaagatccctgc	10	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107022998	T	T	107022998	1	4	61	0	1	0	0	0	0	0	0	0	15046	1305	45	3		3	SORCS3	10	107022998	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	756	107022998	28511749	4140	72385											
SORCS1	114815	broad.mit.edu	37	chr10	108357047	108357047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttttatgaggaaggaaGcacggactaggattcccttt	11	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108357047	T	T	108357047	1	4	61	0	1	0	0	0	0	0	0	0	15044	986	34	3		3	SORCS1	10	108357047	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1334049	108357047	27177700	4141	72386											
SORCS1	114815	broad.mit.edu	37	chr10	108371772	108371772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggacaagcgaagagacCggaattcctctggggatata	12	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108371772	A	A	108371772	3	1	61	1	0	0	0	0	1	0	0	0	15044	652	23	1	830	1	SORCS1	10	108371772	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14725	108371772	27162975	4142	72387											
ADD3	120	broad.mit.edu	37	chr10	111880292	111880292	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataatgccgcaataaacatAcgtgtgcatgtgtctttata	7	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111880292	C	C	111880292	1	2	61	0	1	0	0	0	0	0	0	0	306	406	14	5		5	ADD3	10	111880292	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3508520	111880292	23654455	4143	72388											
SMC3	9126	broad.mit.edu	37	chr10	112350109	112350109	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatggtgttgtgggctcattCcttaccaggagtgccattga	12	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112350109	T	T	112350109	1	4	61	0	1	0	0	0	0	0	0	0	14898	870	30	4		4	SMC3	10	112350109	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	469817	112350109	23184638	4144	72389											
PDCD4	27250	broad.mit.edu	37	chr10	112653952	112653952	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaccatgagcttgtatAtgaagtaagattaccttgcc	7	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112653952	T	T	112653952	3	4	61	1	0	0	0	0	1	0	0	0	11715	449	16	5	1138	5	PDCD4	10	112653952	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	303843	112653952	22880795	4145	72390											
ACSL5	51703	broad.mit.edu	37	chr10	114176519	114176519	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcattattcagcaatcCaattcatgactgtgagactg	6	10	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114176519	T	T	114176519	1	4	61	0	1	0	0	0	0	0	0	0	180	609	21	4		4	ACSL5	10	114176519	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1522567	114176519	21358228	4146	72391											
TCF7L2	6934	broad.mit.edu	37	chr10	114901238	114901238	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgttgaaaaggaagctcTttggggtggttgaggcctgg	19	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114901238	G	G	114901238	1	3	61	0	1	0	0	0	0	0	0	0	15820	1624	56	5		5	TCF7L2	10	114901238	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	724719	114901238	20633509	4147	72392											
NRAP	4892	broad.mit.edu	37	chr10	115365321	115365322	+	Intron	DNP	CC	AA	AA													cttcctgctagagacctttgCctgaatttagcttctgatta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	115365322	AA	AA	115365321	1	1	61	0	1	0	0	0	0	0	0	0	10733	754	26	3		3	NRAP	10	115365321	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	464083	115365321	20169426	4148	72393											
NRAP	4892	broad.mit.edu	37	chr10	115365556	115365556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaggcccgggcagcctGgaaggggagcgcttctattg	16	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115365556	T	T	115365556	3	4	61	1	0	0	0	0	1	0	0	0	10733	1357	47	2	1348	2	NRAP	10	115365556	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	235	115365556	20169191	4149	72394											
NRAP	4892	broad.mit.edu	37	chr10	115391738	115391738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaacctgacaaacaaaacCacaagtgaataggagttgct	7	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115391738	A	A	115391738	1	1	61	0	1	0	0	0	0	0	0	0	10733	609	21	2		2	NRAP	10	115391738	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26182	115391738	20143009	4150	72395											
CASP7	840	broad.mit.edu	37	chr10	115485261	115485261	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaggggggatagatgcaaaAcccttttagagaaacccaaa	10	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115485261	C	C	115485261	3	2	61	1	0	0	0	0	1	0	0	0	2702	43	2	5	634	5	CASP7	10	115485261	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	93523	115485261	20049486	4151	72396											
CASP7	840	broad.mit.edu	37	chr10	115489003	115489003	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagtgccatatactcattCtcattggtgagtggagcagc	11	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115489003	T	T	115489003	1	4	61	0	1	0	0	0	0	0	0	0	2702	928	32	4		4	CASP7	10	115489003	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3742	115489003	20045744	4152	72397											
C10orf81	79949	broad.mit.edu	37	chr10	115526456	115526456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttataaagaccatcatcaccGaggttccattgaaattgatc	6	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115526456	T	T	115526456	3	4	61	1	0	0	0	0	1	0	0	0	1630	1058	37	3	213	3	C10orf81	10	115526456	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37453	115526456	20008291	4153	72398											
TDRD1	56165	broad.mit.edu	37	chr10	115961127	115961127	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgtggactttgagaatgtCttgatcttcatctgaactat	9	6	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115961127	A	A	115961127	1	1	61	0	1	0	0	0	0	0	0	0	15852	928	32	3		3	TDRD1	10	115961127	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	434671	115961127	19573620	4154	72399											
ABLIM1	3983	broad.mit.edu	37	chr10	116203838	116203838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaacagagatgacctttccCggctctctttctccatctct	5	15	3	2	rs143955890	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116203838	A	A	116203838	3	1	61	1	0	0	0	0	1	0	0	0	94	652	23	1	477	1	ABLIM1	10	116203838	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	242711	116203838	19330909	4155	72400											
TRUB1	142940	broad.mit.edu	37	chr10	116735031	116735031	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctcttttcccagcagagTtggcacttaaaaaatcaaaa	5	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116735031	G	G	116735031	3	3	61	1	0	0	0	0	1	0	0	0	16727	1722	60	5	973	5	TRUB1	10	116735031	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	531193	116735031	18799716	4156	72401											
ATRNL1	26033	broad.mit.edu	37	chr10	116919961	116919961	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttttaactacagttctttTcaaatggtcctaaagtaagt	5	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116919961	C	C	116919961	2	2	61	1	0	0	0	0	0	0	0	1	1211	1780	62	5		5	ATRNL1	10	116919961	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	184930	116919961	18614786	4157	72402											
ATRNL1	26033	broad.mit.edu	37	chr10	117309038	117309038	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacttgttgggcttctcgaCggagagaggtatcagtaata	12	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117309038	A	A	117309038	2	1	61	1	0	0	0	0	0	0	0	1	1211	527	19	3		3	ATRNL1	10	117309038	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	389077	117309038	18225709	4158	72403											
C10orf96	374355	broad.mit.edu	37	chr10	118100281	118100281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaatccttcttcttacaGcttttgaaagctcatgaaaa	5	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118100281	T	T	118100281	3	4	61	1	0	0	0	0	1	0	0	0	1638	962	34	3	211	3	C10orf96	10	118100281	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	791243	118100281	17434466	4159	72404											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118231267	118231267	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctccctttccttcttgttTccttatatctaggttggagg	7	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118231267	C	C	118231267	1	2	61	0	1	0	0	0	0	0	0	0	12247	1798	62	5		5	PNLIPRP3	10	118231267	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	130986	118231267	17303480	4160	72405											
HSPA12A	259217	broad.mit.edu	37	chr10	118525649	118525649	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccaccttcagtgctgaGtgtgatcatgagtagctgcc	11	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118525649	C	C	118525649	1	2	61	0	1	0	0	0	0	0	0	0	7473	1044	36	4		4	HSPA12A	10	118525649	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	294382	118525649	17009098	4161	72406											
KIAA1598	57698	broad.mit.edu	37	chr10	118689514	118689514	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcttctaattctttgacCtataagttatttaaaaaaaa	3	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118689514	A	A	118689514	5	1	61	1	0	0	0	0	0	0	1	0	8316	695	24	2	1069	2	KIAA1598	10	118689514	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	163865	118689514	16845233	4162	72407											
KCNK18	338567	broad.mit.edu	37	chr10	118956999	118956999	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccctgcatgcttcagggacGatggaggtctcggggcaccc	15	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118956999	A	A	118956999	1	1	61	0	1	0	0	0	0	0	0	0	8135	1073	37	4		4	KCNK18	10	118956999	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	267485	118956999	16577748	4163	72408											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119805345	119805345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttccttctttgtttgtcCtcaaagatgtcattgagatt	7	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119805345	A	A	119805345	3	1	61	1	0	0	0	0	1	0	0	0	13002	680	24	2	1228	2	RAB11FIP2	10	119805345	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	848346	119805345	15729402	4164	72409											
PRLHR	2834	broad.mit.edu	37	chr10	120354228	120354228	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggccagcacagcgtaggCgctgaggcgcagcgagatgc	17	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120354228	G	G	120354228	3	3	61	1	0	0	0	0	1	0	0	0	12636	768	27	4	587	4	PRLHR	10	120354228	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	548883	120354228	15180519	4165	72410											
FAM45A	404636	broad.mit.edu	37	chr10	120895934	120895934	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattctagagactaaatattCaaatttcggatactaacatg	5	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120895934	G	G	120895934	1	3	61	0	1	0	0	0	0	0	0	0	5615	841	29	4		4	FAM45A	10	120895934	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	541706	120895934	14638813	4166	72411											
SEC23IP	11196	broad.mit.edu	37	chr10	121657782	121657782	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttctaagaagcaagttttCaaagaaaaaaagaaaaaact	5	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121657782	T	T	121657782	1	4	61	0	1	0	0	0	0	0	0	0	14106	841	29	4		4	SEC23IP	10	121657782	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	761848	121657782	13876965	4167	72412											
TACC2	10579	broad.mit.edu	37	chr10	123954854	123954854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagttttcttgaaaatgaaGggtgaacagatacactggat	11	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123954854	T	T	123954854	1	4	61	0	1	0	0	0	0	0	0	0	15621	1015	35	2		2	TACC2	10	123954854	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2297072	123954854	11579893	4168	72413											
BTBD16	118663	broad.mit.edu	37	chr10	124036380	124036380	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaacagcctttctctggGgacctgctctcactttccca	6	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124036380	T	T	124036380	2	4	61	1	0	0	0	0	0	0	0	1	1550	1219	43	2		2	BTBD16	10	124036380	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	81526	124036380	11498367	4169	72414											
BTBD16	118663	broad.mit.edu	37	chr10	124066899	124066899	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgctcataatatcacggggGaaaaccatcagtgatataat	8	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124066899	A	A	124066899	1	1	61	0	1	0	0	0	0	0	0	0	1550	1189	41	4		4	BTBD16	10	124066899	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30519	124066899	11467848	4170	72415											
PLEKHA1	59338	broad.mit.edu	37	chr10	124159762	124159762	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttactaaatgtgtatgattAttggggaatcatacatgtgg	10	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124159762	T	T	124159762	1	4	61	0	1	0	0	0	0	0	0	0	12150	464	16	5		5	PLEKHA1	10	124159762	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	92863	124159762	11374985	4171	72416											
HTRA1	5654	broad.mit.edu	37	chr10	124249229	124249229	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagctctctgattgcagctGattctcggggggcactgaag	14	9	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124249229	T	T	124249229	1	4	61	0	1	0	0	0	0	0	0	0	7523	1305	45	3		3	HTRA1	10	124249229	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	89467	124249229	11285518	4172	72417											
DMBT1	1755	broad.mit.edu	37	chr10	124389538	124389538	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggtcatctggtgaggGgtgagttcctctgcagcaca	14	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124389538	C	C	124389538	1	2	61	0	1	0	0	0	0	0	0	0	4617	1247	43	4		4	DMBT1	10	124389538	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	140309	124389538	11145209	4173	72418											
GPR26	2849	broad.mit.edu	37	chr10	125454055	125454057	+	3'UTR	DEL	AAT	-	-													gagaaggaagaaagaaaagaAataagaagagaagcaagaca					rs146175786		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125454057	-	-	125454055	6	5	61	0	1	1	0	1	0	0	0	0	6749	29	1	0		0	GPR26	10	125454055	3'UTR	DEL	AAT	TCGA-17-Z031-01A-01W-0746-08	1064517	125454055	10080692	4174	72419											
GPR26	2849	broad.mit.edu	37	chr10	125454196	125454196	+	3'UTR	DEL	G	-	-													aggaaaaaaggaaggagggaGgggaggaaggaaaagaaaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125454196	-	-	125454196	6	5	61	0	1	1	0	1	0	0	0	0	6749	1015	35	0		0	GPR26	10	125454196	3'UTR	DEL	G	TCGA-17-Z031-01A-01W-0746-08	141	125454196	10080551	4175	72420											
CPXM2	119587	broad.mit.edu	37	chr10	125554942	125554942	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagggaagaaggggacagaAcaaagagacgcagaagcaaa	15	5	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125554942	C	C	125554942	1	2	61	0	1	0	0	0	0	0	0	0	3870	58	2	5		5	CPXM2	10	125554942	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	100746	125554942	9979805	4176	72421											
CTBP2	1488	broad.mit.edu	37	chr10	126715712	126715712	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgaagacctggctgaggGggtaggcaggcacctccgcc	16	13	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126715712	A	A	126715712	1	1	61	0	1	0	0	0	0	0	0	0	4032	1232	43	4		4	CTBP2	10	126715712	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1160770	126715712	8819035	4177	72422											
C10orf137	26098	broad.mit.edu	37	chr10	127408457	127408457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctcagcctcctgtcccaGggagaatccgaggaatcttc	12	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127408457	T	T	127408457	3	4	61	1	0	0	0	0	1	0	0	0	1605	991	35	2	83	2	C10orf137	10	127408457	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	692745	127408457	8126290	4178	72423											
C10orf137	26098	broad.mit.edu	37	chr10	127438099	127438099	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaactgcttagagtacagcTagagagagtagcatttgctg	12	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127438099	C	C	127438099	3	2	61	1	0	0	0	0	1	0	0	0	1605	1522	53	5	3222	5	C10orf137	10	127438099	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29642	127438099	8096648	4179	72424											
C10orf90	118611	broad.mit.edu	37	chr10	128114359	128114359	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcccatgatgaagataatgCtaagtttaatggcttatcca	7	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128114359	G	G	128114359	1	3	61	0	1	0	0	0	0	0	0	0	1634	812	28	4		4	C10orf90	10	128114359	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	676260	128114359	7420388	4180	72425											
C10orf90	118611	broad.mit.edu	37	chr10	128326955	128326955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactctgtgtcctcttgctGcacccctgacactgcctctt	8	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128326955	T	T	128326955	1	4	61	0	1	0	0	0	0	0	0	0	1634	1334	46	3		3	C10orf90	10	128326955	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	212596	128326955	7207792	4181	72426											
PAOX	196743	broad.mit.edu	37	chr10	135202325	135202359	+	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	-	-													ggagagctgggctggacactGtcatcccggggctctctttc					rs144417516	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135202359	-	-	135202325	6	5	61	0	1	1	0	1	0	0	0	0	11517	1392	48	0		0	PAOX	10	135202325	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	TCGA-17-Z031-01A-01W-0746-08	6875370	135202325	332422	4182	72427											
FRG2B	441581	broad.mit.edu	37	chr10	135439016	135439016	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgtcccctatggtgggcatCacaggtctcctggatttcac	10	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135439016	A	A	135439016	3	1	61	1	0	0	0	0	1	0	0	0	6107	826	29	3	415	3	FRG2B	10	135439016	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	236691	135439016	95731	4183	72428											
FRG2B	441581	broad.mit.edu	37	chr10	135440180	135440180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagatctgttggaaagGgggctggtcagtggagcact	17	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135440180	T	T	135440180	3	4	61	1	0	0	0	0	1	0	0	0	6107	1232	43	2	784	2	FRG2B	10	135440180	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1164	135440180	94567	4184	72429											
CHID1	66005	broad.mit.edu	37	chr11	903072	903072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttgaggtccgtcacgaCcaaaccccggtcttgcaccg	10	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	903072	A	A	903072	3	1	61	1	0	0	0	0	1	0	0	0	3376	507	18	3	1074	3	CHID1	11	903072	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08		903072	134103444	4185	72430											
MUC6	4588	broad.mit.edu	37	chr11	1017147	1017147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgggtggaccctgtgGccttgatcgtggtcggtgga	18	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1017147	T	T	1017147	3	4	61	1	0	0	0	0	1	0	0	0	10074	1203	42	3	1677	3	MUC6	11	1017147	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	114075	1017147	133989369	4186	72431											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1605904	1605904	+	Frame_Shift_Del	DEL	T	-	-													gagccacaaccccccttggaTcccccacaagaaccgcagcc					rs113408385		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1605904	-	-	1605904	7	5	61	1	0	1	0	1	0	0	0	0	8630	1422	50	0	264	0	KRTAP5-1	11	1605904	Frame_Shift_Del	DEL	T	TCGA-17-Z031-01A-01W-0746-08	588757	1605904	133400612	4187	72432											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1605965	1605965	+	Frame_Shift_Del	DEL	C	-	-													agccacagccccccttggagCccccacaagaaccacaggcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1605965	-	-	1605965	7	5	61	1	0	1	0	1	0	0	0	0	8630	739	26	0	325	0	KRTAP5-1	11	1605965	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	61	1605965	133400551	4188	72433											
TNNT3	7140	broad.mit.edu	37	chr11	1953717	1953717	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agactcactgctcctaagatCccagaaggggagaaagtgga	12	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1953717	A	A	1953717	2	1	61	1	0	0	0	0	0	0	0	1	16455	845	30	3		3	TNNT3	11	1953717	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	347752	1953717	133052799	4189	72434											
SLC22A18	5002	broad.mit.edu	37	chr11	2940624	2940624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctcatgtccttcttcgGgctcctccagatggtgagtg	10	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2940624	T	T	2940624	3	4	61	1	0	0	0	0	1	0	0	0	14562	1232	43	2	877	2	SLC22A18	11	2940624	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	986907	2940624	132065892	4190	72435											
STIM1	6786	broad.mit.edu	37	chr11	4076871	4076871	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccatgccatgccaaggtcAggaggggactgggtttttct	15	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4076871	T	T	4076871	1	4	61	0	1	0	0	0	0	0	0	0	15401	203	7	5		5	STIM1	11	4076871	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1136247	4076871	130929645	4191	72436											
RRM1	6240	broad.mit.edu	37	chr11	4189401	4189401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacccaccactccctccaGcccctgtctaactctgcctc	5	21	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4189401	T	T	4189401	1	4	61	0	1	0	0	0	0	0	0	0	13792	986	34	3		3	RRM1	11	4189401	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	112530	4189401	130817115	4192	72437											
TRIM21	6737	broad.mit.edu	37	chr11	4411068	4411068	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttctcatgcatatctccTacgcctggggaatgaggttg	10	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4411068	C	C	4411068	1	2	61	0	1	0	0	0	0	0	0	0	16619	1537	53	5		5	TRIM21	11	4411068	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	221667	4411068	130595448	4193	72438											
OR52K1	390036	broad.mit.edu	37	chr11	4509980	4509980	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtctatgaaggctgctaGgttattttgtttaaagtcta	9	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4509980	A	A	4509980	1	1	61	0	1	0	0	0	0	0	0	0	11217	1015	35	4		4	OR52K1	11	4509980	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98912	4509980	130496536	4194	72439											
OR52K1	390036	broad.mit.edu	37	chr11	4510679	4510679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccattgctactgtgaacaCatggctgtggtaaggctggc	13	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4510679	A	A	4510679	3	1	61	1	0	0	0	0	1	0	0	0	11217	477	17	3	551	3	OR52K1	11	4510679	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	699	4510679	130495837	4195	72440											
OR51D1	390038	broad.mit.edu	37	chr11	4661117	4661117	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgggtatccctggcctgGggcctaccatacacttttgg	13	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4661117	A	A	4661117	3	1	61	1	0	0	0	0	1	0	0	0	11187	1232	43	4	99	4	OR51D1	11	4661117	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	150438	4661117	130345399	4196	72441											
OR51E1	143503	broad.mit.edu	37	chr11	4665870	4665870	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccacacggcaacacccCttgccttgtactctttaccc	6	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4665870	A	A	4665870	1	1	61	0	1	0	0	0	0	0	0	0	11188	696	24	2		2	OR51E1	11	4665870	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4753	4665870	130340646	4197	72442											
OR51G1	79324	broad.mit.edu	37	chr11	4945559	4945559	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggaggctgctattaagaAgaattgtcatagctttacaa	9	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4945559	C	C	4945559	3	2	61	1	0	0	0	0	1	0	0	0	11192	72	3	5	956	5	OR51G1	11	4945559	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	279689	4945559	130060957	4198	72443											
OR52A4	390053	broad.mit.edu	37	chr11	5142859	5142859	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaagctgtgattctctGtacttttatatattttatgc	6	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5142859	T	T	5142859	1	4	61	0	1	0	0	0	0	0	0	0	11203	1392	48	3		3	OR52A4	11	5142859	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	197300	5142859	129863657	4199	72444											
OR51V1	283111	broad.mit.edu	37	chr11	5221133	5221133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacggtgcaccattgtgagGctaatgatagggatgtagaa	13	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5221133	T	T	5221133	3	4	61	1	0	0	0	0	1	0	0	0	11201	1194	42	3	170	3	OR51V1	11	5221133	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	78274	5221133	129785383	4200	72445											
HBD	3045	broad.mit.edu	37	chr11	5254350	5254350	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggtaggcagatacatGcatatggttaacagagaaat	12	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5254350	C	C	5254350	1	2	61	0	1	0	0	0	0	0	0	0	7045	1334	46	4		4	HBD	11	5254350	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33217	5254350	129752166	4201	72446											
HBG2	3048	broad.mit.edu	37	chr11	5284955	5284955	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagattaaccaagaaaagaGgagagaagtgcaaataaact	9	5	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5284955	A	A	5284955	1	1	61	0	1	0	0	0	0	0	0	0	7049	1015	35	4		4	HBG2	11	5284955	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30605	5284955	129721561	4202	72447											
OR51B4	79339	broad.mit.edu	37	chr11	5322897	5322897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggattgggtgaaacaggCagcatgggcaatctccctct	13	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5322897	A	A	5322897	3	1	61	1	0	0	0	0	1	0	0	0	11184	710	25	3	655	3	OR51B4	11	5322897	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37942	5322897	129683619	4203	72448											
OR51B5	282763	broad.mit.edu	37	chr11	5409055	5409055	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttctctgactaccctaTataaaatgcatcactcttac	4	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5409055	C	C	5409055	1	2	61	0	1	0	0	0	0	0	0	0	11185	1421	49	5		5	OR51B5	11	5409055	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	86158	5409055	129597461	4204	72449											
OR51B5	282763	broad.mit.edu	37	chr11	5410549	5410549	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgatgaccatggtactgcTtgtgatgttgtgaatgttag	13	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5410549	G	G	5410549	1	3	61	0	1	0	0	0	0	0	0	0	11185	1624	56	5		5	OR51B5	11	5410549	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1494	5410549	129595967	4205	72450											
OR51B5	282763	broad.mit.edu	37	chr11	5474606	5474606	+	Intron	DEL	C	-	-													tcagtttccatttatgtcaaCatcatcgctttgtctcttat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5474606	-	-	5474606	6	5	61	0	1	1	0	1	0	0	0	0	11185	493	17	0		0	OR51B5	11	5474606	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	64057	5474606	129531910	4206	72451											
OR51I2	390064	broad.mit.edu	37	chr11	5474877	5474877	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctgtgcgagtggagccCagcctccatgagcccatgta	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5474877	A	A	5474877	2	1	61	1	0	0	0	0	0	0	0	1	11195	581	21	2		2	OR51I2	11	5474877	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	271	5474877	129531639	4207	72452											
UBQLN3	50613	broad.mit.edu	37	chr11	5530706	5530706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcctccttgtctttgggcGtcttcactgtcaccttgatg	8	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5530706	T	T	5530706	3	4	61	1	0	0	0	0	1	0	0	0	17024	1145	40	3	1888	3	UBQLN3	11	5530706	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	55829	5530706	129475810	4208	72453											
UBQLNL	143630	broad.mit.edu	37	chr11	5536215	5536215	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggcctgctcaatctgCaatattgcttggaatgcttt	11	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5536215	A	A	5536215	1	1	61	0	1	0	0	0	0	0	0	0	17026	725	25	3		3	UBQLNL	11	5536215	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5509	5536215	129470301	4209	72454											
OR52N2	390077	broad.mit.edu	37	chr11	5841866	5841866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgactttaacgcctgcctgGcccagatgttttttgtccat	8	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5841866	T	T	5841866	3	4	61	1	0	0	0	0	1	0	0	0	11222	1203	42	3	303	3	OR52N2	11	5841866	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	305651	5841866	129164650	4210	72455											
SMPD1	6609	broad.mit.edu	37	chr11	6412057	6412057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaggttacatcgcataGtgccccggctccgagatgtc	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6412057	T	T	6412057	3	4	61	1	0	0	0	0	1	0	0	0	14918	1029	36	3	231	3	SMPD1	11	6412057	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	570191	6412057	128594459	4211	72456											
APBB1	322	broad.mit.edu	37	chr11	6432455	6432455	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtcccacagctgtggcCtgcagcttggcgttgagcag	15	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6432455	G	G	6432455	3	3	61	1	0	0	0	0	1	0	0	0	761	680	24	4	2061	4	APBB1	11	6432455	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20398	6432455	128574061	4212	72457											
HPX	3263	broad.mit.edu	37	chr11	6453096	6453096	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcccagtctctacctcaAgcctctcccccaatacacac	3	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6453096	G	G	6453096	1	3	61	0	1	0	0	0	0	0	0	0	7413	87	3	5		5	HPX	11	6453096	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	20641	6453096	128553420	4213	72458											
TRIM3	10612	broad.mit.edu	37	chr11	6472743	6472743	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagacagaagggagtaggatCctgagggaggagaccccccc	15	11	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6472743	A	A	6472743	1	1	61	0	1	0	0	0	0	0	0	0	16628	870	30	3		3	TRIM3	11	6472743	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19647	6472743	128533773	4214	72459											
DNHD1	144132	broad.mit.edu	37	chr11	6592889	6592889	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatggtccaaatcccacGgttccagagagagggctgct	13	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6592889	T	T	6592889	2	4	61	1	0	0	0	0	0	0	0	1	4708	1103	39	1		1	DNHD1	11	6592889	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	120146	6592889	128413627	4215	72460											
DCHS1	8642	broad.mit.edu	37	chr11	6653761	6653761	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatcggggagccagcccAcgggttcccacatcctgtac	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6653761	T	T	6653761	2	4	61	1	0	0	0	0	0	0	0	1	4320	146	6	5		5	DCHS1	11	6653761	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	60872	6653761	128352755	4216	72461											
OR10A5	144124	broad.mit.edu	37	chr11	6867317	6867317	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcccttgcactacccagTcatcatgaaccaaaggacac	6	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6867317	G	G	6867317	3	3	61	1	0	0	0	0	1	0	0	0	10987	1667	58	5	406	5	OR10A5	11	6867317	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	213556	6867317	128139199	4217	72462											
OR10A2	341276	broad.mit.edu	37	chr11	6891839	6891839	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagaaataacgaggtgaAgaatgccctcagcaggacgg	13	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6891839	C	C	6891839	3	2	61	1	0	0	0	0	1	0	0	0	10984	72	3	5	856	5	OR10A2	11	6891839	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	24522	6891839	128114677	4218	72463											
ZNF214	7761	broad.mit.edu	37	chr11	7024026	7024026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaatttccactcctccCatgtaaaaataatagtcaca	4	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7024026	A	A	7024026	3	1	61	1	0	0	0	0	1	0	0	0	17896	595	21	2	1787	2	ZNF214	11	7024026	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	132187	7024026	127982490	4219	72464											
NLRP14	338323	broad.mit.edu	37	chr11	7063863	7063863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgttagattgggcagaGggcagtctctaccagcagag	14	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7063863	T	T	7063863	3	4	61	1	0	0	0	0	1	0	0	0	10571	991	35	2	616	2	NLRP14	11	7063863	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39837	7063863	127942653	4220	72465											
OVCH2	341277	broad.mit.edu	37	chr11	7721932	7721932	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcacttttcctcacattgTttctccagcctcgaccacag	5	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7721932	G	G	7721932	3	3	61	1	0	0	0	0	1	0	0	0	11418	1725	60	5	917	5	OVCH2	11	7721932	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	658069	7721932	127284584	4221	72466											
OVCH2	341277	broad.mit.edu	37	chr11	7722922	7722922	+	Frame_Shift_Del	DEL	C	-	-													cctgtgcaaagaaaggtcttCccactgatgggcctctttag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7722922	-	-	7722922	7	5	61	1	0	1	0	1	0	0	0	0	11418	842	30	0	1073	0	OVCH2	11	7722922	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	990	7722922	127283594	4222	72467											
IPO7	10527	broad.mit.edu	37	chr11	9435846	9435846	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccattggtagcagcaatgcAgcattttctgccagttctaa	8	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9435846	T	T	9435846	3	4	61	1	0	0	0	0	1	0	0	0	7867	188	7	5	542	5	IPO7	11	9435846	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1712924	9435846	125570670	4223	72468											
SWAP70	23075	broad.mit.edu	37	chr11	9769368	9769368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtcagggtggtgacctgGgcaggatttgatctggagct	18	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9769368	T	T	9769368	1	4	61	0	1	0	0	0	0	0	0	0	15543	1247	43	2		2	SWAP70	11	9769368	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	333522	9769368	125237148	4224	72469											
GALNTL4	374378	broad.mit.edu	37	chr11	11308040	11308040	+	Intron	DEL	T	-	-													ttgaaatactgttagatgacTtttttttttctccagtgagc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11308040	-	-	11308040	6	5	61	0	1	1	0	1	0	0	0	0	6285	1624	56	0		0	GALNTL4	11	11308040	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	1538672	11308040	123698476	4225	72470											
GALNTL4	374378	broad.mit.edu	37	chr11	11362513	11362513	+	Silent	SNP	G	A	A													tcaatgtgggcaatccgtgaGcagggcaggacctccacact							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11362513	A	A	11362513	2	1	61	1	0	0	0	0	0	0	0	1	6285	963	34	4		4	GALNTL4	11	11362513	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54473	11362513	123644003	4226	72471	329	2									
GALNTL4	374378	broad.mit.edu	37	chr11	11362515	11362515	+	Missense_Mutation	SNP	A	T	T													aatgtgggcaatccgtgagcAgggcaggacctccacactcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11362515	T	T	11362515	3	4	61	1	0	0	0	0	1	0	0	0	6285	188	7	5	714	5	GALNTL4	11	11362515	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2	11362515	123644001	4227	72472	329	2									
GALNTL4	374378	broad.mit.edu	37	chr11	11521277	11521277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtgctctacatggtgcCctagctatacctcttcctgg	8	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11521277	A	A	11521277	1	1	61	0	1	0	0	0	0	0	0	0	6285	638	22	2		2	GALNTL4	11	11521277	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	158762	11521277	123485239	4228	72473											
GALNTL4	374378	broad.mit.edu	37	chr11	11643002	11643002	+	Frame_Shift_Del	DEL	C	-	-													ctccagcttcttgtcgggcgCcggctcctgcccccgcacat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11643002	-	-	11643002	7	5	61	1	0	1	0	1	0	0	0	0	6285	739	26	0	1728	0	GALNTL4	11	11643002	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	121725	11643002	123363514	4229	72474											
DKK3	27122	broad.mit.edu	37	chr11	11989878	11989878	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgagaacgctggggccccTggctttctcccccaggtgcc	13	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11989878	A	A	11989878	1	1	61	0	1	0	0	0	0	0	0	0	4586	1595	55	5		5	DKK3	11	11989878	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	346876	11989878	123016638	4230	72475											
PDE3B	5140	broad.mit.edu	37	chr11	14810521	14810521	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgacagattttcagaatAaaatgtttcttttttctctg	5	5	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14810521	G	G	14810521	1	3	61	0	1	0	0	0	0	0	0	0	11732	377	13	5		5	PDE3B	11	14810521	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2820643	14810521	120195995	4231	72476											
PDE3B	5140	broad.mit.edu	37	chr11	14810622	14810622	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagcatattaaagagtgacAttttaaaccattgttaaatt	5	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14810622	G	G	14810622	1	3	61	0	1	0	0	0	0	0	0	0	11732	232	8	5		5	PDE3B	11	14810622	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	101	14810622	120195894	4232	72477											
PDE3B	5140	broad.mit.edu	37	chr11	14856571	14856571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgctacatgcagtttgGtatctgacaacacggccagt	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14856571	T	T	14856571	3	4	61	1	0	0	0	0	1	0	0	0	11732	1270	44	3	2292	3	PDE3B	11	14856571	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45949	14856571	120149945	4233	72478											
SOX6	55553	broad.mit.edu	37	chr11	16010602	16010602	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctgaaggatttttctcCtctcatcctttgcccaaacc	6	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16010602	T	T	16010602	3	4	61	1	0	0	0	0	1	0	0	0	15069	681	24	4	591	4	SOX6	11	16010602	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1154031	16010602	118995914	4234	72479											
SOX6	55553	broad.mit.edu	37	chr11	16371721	16371721	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatctggtatcagtctcaActggtgttcctcagtcttgc	8	11	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16371721	G	G	16371721	1	3	61	0	1	0	0	0	0	0	0	0	15069	58	2	5		5	SOX6	11	16371721	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	361119	16371721	118634795	4235	72480											
PLEKHA7	144100	broad.mit.edu	37	chr11	16834758	16834758	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacacagttatgaacaccaaGagtttccataactcgaggtt	7	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16834758	T	T	16834758	1	4	61	0	1	0	0	0	0	0	0	0	12156	957	33	3		3	PLEKHA7	11	16834758	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	463037	16834758	118171758	4236	72481											
ABCC8	6833	broad.mit.edu	37	chr11	17419841	17419841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgctcttgctctggcCccaccctcctatcagaggcc	9	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17419841	A	A	17419841	1	1	61	0	1	0	0	0	0	0	0	0	58	638	22	2		2	ABCC8	11	17419841	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	585083	17419841	117586675	4237	72482											
MYOD1	4654	broad.mit.edu	37	chr11	17741528	17741528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcactcgcacttccccGcggcggtgcacccggccccg	12	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17741528	T	T	17741528	3	4	61	1	0	0	0	0	1	0	0	0	10182	1087	38	3	201	3	MYOD1	11	17741528	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	321687	17741528	117264988	4238	72483											
MYOD1	4654	broad.mit.edu	37	chr11	17741777	17741777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgcccaaggtggagatcCtgcgcaacgccatccgctat	12	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17741777	A	A	17741777	3	1	61	1	0	0	0	0	1	0	0	0	10182	680	24	2	450	2	MYOD1	11	17741777	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	249	17741777	117264739	4239	72484											
KCNC1	3746	broad.mit.edu	37	chr11	17799374	17799374	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgattggtccatttctcttTtgactgactgcctctttgta	7	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17799374	C	C	17799374	1	2	61	0	1	0	0	0	0	0	0	0	8084	1856	64	5		5	KCNC1	11	17799374	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	57597	17799374	117207142	4240	72485											
SERGEF	26297	broad.mit.edu	37	chr11	17918689	17918689	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtaagggaccattgctggGtttgaagatgtggtgctaca	14	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17918689	A	A	17918689	1	1	61	0	1	0	0	0	0	0	0	0	14190	1276	44	4		4	SERGEF	11	17918689	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	119315	17918689	117087827	4241	72486											
MRGPRX3	117195	broad.mit.edu	37	chr11	18154412	18154412	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcaggaaaagacaggagAcatgaagcttcctttcagaa	10	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18154412	T	T	18154412	1	4	61	0	1	0	0	0	0	0	0	0	9862	290	10	5		5	MRGPRX3	11	18154412	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	235723	18154412	116852104	4242	72487											
HPS5	11234	broad.mit.edu	37	chr11	18303329	18303329	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagcatcttggtcatggcTgtgaatgaaatattacttta	8	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18303329	A	A	18303329	1	1	61	0	1	0	0	0	0	0	0	0	7409	1595	55	5		5	HPS5	11	18303329	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	148917	18303329	116703187	4243	72488											
SPTY2D1	144108	broad.mit.edu	37	chr11	18636397	18636397	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccactcactggtcgtcgaAgttcatgtggactgctcaca	10	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18636397	C	C	18636397	3	2	61	1	0	0	0	0	1	0	0	0	15244	72	3	5	649	5	SPTY2D1	11	18636397	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	333068	18636397	116370119	4244	72489											
E2F8	79733	broad.mit.edu	37	chr11	19261656	19261656	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgaagttataaagtacctTttcgttctccattctgtaaa	5	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19261656	C	C	19261656	3	2	61	1	0	0	0	0	1	0	0	0	4913	1850	64	5	2638	5	E2F8	11	19261656	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	625259	19261656	115744860	4245	72490											
NAV2	89797	broad.mit.edu	37	chr11	19394630	19394630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacagatcatctttccatGtgatgttcacattctctttc	5	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19394630	T	T	19394630	1	4	61	0	1	0	0	0	0	0	0	0	10278	1392	48	3		3	NAV2	11	19394630	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132974	19394630	115611886	4246	72491											
NAV2	89797	broad.mit.edu	37	chr11	19503040	19503040	+	Intron	DEL	G	-	-													tgctgaaggcagaaagacttGggttcaagtactgactcttc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19503040	-	-	19503040	6	5	61	0	1	1	0	1	0	0	0	0	10278	1363	47	0		0	NAV2	11	19503040	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	108410	19503040	115503476	4247	72492											
NAV2	89797	broad.mit.edu	37	chr11	20112282	20112282	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcttttggcattgtcaCccacaggaagcaccaggcag	12	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20112282	T	T	20112282	1	4	61	0	1	0	0	0	0	0	0	0	10278	522	18	4		4	NAV2	11	20112282	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	609242	20112282	114894234	4248	72493											
DBX1	120237	broad.mit.edu	37	chr11	20178296	20178296	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattgactccgcccccgcctCagctcgcggttccgtttgcc	9	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20178296	A	A	20178296	1	1	61	0	1	0	0	0	0	0	0	0	4292	841	29	3		3	DBX1	11	20178296	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66014	20178296	114828220	4249	72494											
NELL1	4745	broad.mit.edu	37	chr11	20760790	20760790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtggtggtttggcagcacCttccagggcccgttgacatt	13	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20760790	A	A	20760790	1	1	61	0	1	0	0	0	0	0	0	0	10428	696	24	2		2	NELL1	11	20760790	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	582494	20760790	114245726	4250	72495											
NELL1	4745	broad.mit.edu	37	chr11	20790938	20790938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtttgggaagttaccaaGggttcacttagtggtcaggc	13	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20790938	T	T	20790938	1	4	61	0	1	0	0	0	0	0	0	0	10428	1015	35	2		2	NELL1	11	20790938	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30148	20790938	114215578	4251	72496											
NELL1	4745	broad.mit.edu	37	chr11	20970958	20970958	+	Intron	DEL	G	-	-													atctgcagctggtatgttttGgaaatacctaaagattgagt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20970958	-	-	20970958	6	5	61	0	1	1	0	1	0	0	0	0	10428	1363	47	0		0	NELL1	11	20970958	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	180020	20970958	114035558	4252	72497											
NELL1	4745	broad.mit.edu	37	chr11	20981800	20981800	+	Intron	DEL	G	-	-													gggaaagcctcttacgccttGgacagcccaaagtttcctat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20981800	-	-	20981800	6	5	61	0	1	1	0	1	0	0	0	0	10428	1363	47	0		0	NELL1	11	20981800	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	10842	20981800	114024716	4253	72498											
NELL1	4745	broad.mit.edu	37	chr11	20996732	20996732	+	Intron	DEL	T	-	-													gcctggctaatttttgtttaTtttttttttagtagagatgg					rs5790152		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20996732	-	-	20996732	6	5	61	0	1	1	0	1	0	0	0	0	10428	1508	52	0		0	NELL1	11	20996732	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	14932	20996732	114009784	4254	72499											
NELL1	4745	broad.mit.edu	37	chr11	21114379	21114379	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgctgatgggaagtagttggGaggctttgggacctagaagg	18	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21114379	C	C	21114379	1	2	61	0	1	0	0	0	0	0	0	0	10428	1189	41	4		4	NELL1	11	21114379	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	117647	21114379	113892137	4255	72500											
NELL1	4745	broad.mit.edu	37	chr11	21176857	21176857	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctaatggaaatgtctaagGattgggtaaatggatgtgtc	12	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21176857	A	A	21176857	1	1	61	0	1	0	0	0	0	0	0	0	10428	1189	41	4		4	NELL1	11	21176857	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62478	21176857	113829659	4256	72501											
NELL1	4745	broad.mit.edu	37	chr11	21251132	21251132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctggtttatcaactggCaagggtactgtgcgtcaggg	14	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21251132	A	A	21251132	1	1	61	0	1	0	0	0	0	0	0	0	10428	725	25	3		3	NELL1	11	21251132	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	74275	21251132	113755384	4257	72502											
NELL1	4745	broad.mit.edu	37	chr11	21594969	21594969	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcaaggtaattggatgttCtgcggatattgaagccttga	12	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21594969	A	A	21594969	1	1	61	0	1	0	0	0	0	0	0	0	10428	928	32	3		3	NELL1	11	21594969	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	343837	21594969	113411547	4258	72503											
SLC17A6	57084	broad.mit.edu	37	chr11	22398157	22398157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaatgggcatttcgaatgGtgttggcacattgtcaggaa	12	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22398157	T	T	22398157	3	4	61	1	0	0	0	0	1	0	0	0	14534	1261	44	3	1394	3	SLC17A6	11	22398157	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	803188	22398157	112608359	4259	72504											
GAS2	2620	broad.mit.edu	37	chr11	22747641	22747641	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtactaaaaagaaaaggataTgtgcttgcaggaacagattt	10	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22747641	A	A	22747641	1	1	61	0	1	0	0	0	0	0	0	0	6307	1479	51	5		5	GAS2	11	22747641	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	349484	22747641	112258875	4260	72505											
ANO3	63982	broad.mit.edu	37	chr11	26510767	26510767	+	Intron	DEL	C	-	-													ccagtcatggctgaaaggggCcaacgtagagctcagactgt					rs76942738		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26510767	-	-	26510767	6	5	61	0	1	1	0	1	0	0	0	0	698	754	26	0		0	ANO3	11	26510767	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	3763126	26510767	108495749	4261	72506											
MUC15	143662	broad.mit.edu	37	chr11	26584732	26584732	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcctttttccacacaacaAgtagcccacaagagtaagca	5	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26584732	G	G	26584732	2	3	61	1	0	0	0	0	0	0	0	1	10066	69	3	5		5	MUC15	11	26584732	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	73965	26584732	108421784	4262	72507											
SLC5A12	159963	broad.mit.edu	37	chr11	26700107	26700107	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataataatgaagggtgccttTgtatgtcagcgttgagagag	13	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26700107	C	C	26700107	1	2	61	0	1	0	0	0	0	0	0	0	14778	1827	63	5		5	SLC5A12	11	26700107	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	115375	26700107	108306409	4263	72508											
SLC5A12	159963	broad.mit.edu	37	chr11	26730735	26730735	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaactgtgacagataagccGacatacttctgcttaatttt	7	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26730735	T	T	26730735	1	4	61	0	1	0	0	0	0	0	0	0	14778	1073	37	3		3	SLC5A12	11	26730735	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30628	26730735	108275781	4264	72509											
SLC5A12	159963	broad.mit.edu	37	chr11	26747702	26747709	+	5'Flank	DEL	TTCTTCCT	-	-													tcttttctctccttccttccTtcttccttccttccttcctt					rs4259786		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26747709	-	-	26747702	6	5	61	0	1	1	0	1	0	0	0	0	14778	1624	56	0		0	SLC5A12	11	26747702	5'Flank	DEL	TTCTTCCT	TCGA-17-Z031-01A-01W-0746-08	16967	26747702	108258814	4265	72510											
BBOX1	8424	broad.mit.edu	37	chr11	27114954	27114954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctgccatcacagataaGgtttgaaatagttcccaact	6	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27114954	T	T	27114954	1	4	61	0	1	0	0	0	0	0	0	0	1339	1015	35	2		2	BBOX1	11	27114954	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	367252	27114954	107891562	4266	72511											
METT5D1	196074	broad.mit.edu	37	chr11	28135265	28135265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagtatacagatgaatccCaacttttgatggttgatgcg	9	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28135265	A	A	28135265	1	1	61	0	1	0	0	0	0	0	0	0	9585	609	21	2		2	METT5D1	11	28135265	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1020311	28135265	106871251	4267	72512											
MPPED2	744	broad.mit.edu	37	chr11	30431470	30431470	+	Intron	DEL	A	-	-													tcactatcacaaacttgcccAaaataaatccacagccttaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30431470	-	-	30431470	6	5	61	0	1	1	0	1	0	0	0	0	9836	145	5	0		0	MPPED2	11	30431470	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	2296205	30431470	104575046	4268	72513											
MPPED2	744	broad.mit.edu	37	chr11	30510406	30510407	+	Intron	INS	-	AC	AC													gcagagtgcatatttgtttaINSacacacacacacacacacaa					rs149428709	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	30510407	AC	AC	30510406	6	5	61	0	1	1	1	0	0	0	0	0	9836	377	13	0		0	MPPED2	11	30510406	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	78936	30510406	104496110	4269	72514											
MPPED2	744	broad.mit.edu	37	chr11	30513756	30513756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatctgaattagtctgtttGttcgattgcttgagatgctg	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30513756	T	T	30513756	1	4	61	0	1	0	0	0	0	0	0	0	9836	1392	48	3		3	MPPED2	11	30513756	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3350	30513756	104492760	4270	72515											
DCDC1	341019	broad.mit.edu	37	chr11	31230285	31230285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaatgcaccactctgtcCtacaccagggcctttgcaat	6	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31230285	A	A	31230285	1	1	61	0	1	0	0	0	0	0	0	0	4317	696	24	2		2	DCDC1	11	31230285	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	716529	31230285	103776231	4271	72516											
DCDC1	341019	broad.mit.edu	37	chr11	31327937	31327937	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagagaactctgcaacccTgaagaaaaagaaaaacagaa	8	7	1	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31327937	A	A	31327937	5	1	61	1	0	0	0	0	0	0	1	0	4317	1594	55	5	651	5	DCDC1	11	31327937	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	97652	31327937	103678579	4272	72517											
RCN1	5954	broad.mit.edu	37	chr11	31976669	31976669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagagatttctgaggcaggCtgtgtggatctgaggcgaga	17	5	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31976669	A	A	31976669	1	1	61	0	1	0	0	0	0	0	0	0	13287	812	28	3		3	RCN1	11	31976669	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	648732	31976669	103029847	4273	72518											
QSER1	79832	broad.mit.edu	37	chr11	32996928	32996928	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttaaaaaaaatgtttttcaGaatgttaaggagactctagc	7	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32996928	C	C	32996928	1	2	61	0	1	0	0	0	0	0	0	0	12990	957	33	4		4	QSER1	11	32996928	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1020259	32996928	102009588	4274	72519											
C11orf41	25758	broad.mit.edu	37	chr11	33583363	33583363	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaggccattcattaataAgattggcacttttctttgct	7	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33583363	C	C	33583363	1	2	61	0	1	0	0	0	0	0	0	0	1652	87	3	5		5	C11orf41	11	33583363	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	586435	33583363	101423153	4275	72520											
C11orf41	25758	broad.mit.edu	37	chr11	33596337	33596337	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagcctttgttggggacCgcagctgccaagatcctgag	15	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33596337	A	A	33596337	2	1	61	1	0	0	0	0	0	0	0	1	1652	639	23	1		1	C11orf41	11	33596337	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12974	33596337	101410179	4276	72521											
LMO2	4005	broad.mit.edu	37	chr11	33881126	33881126	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgcccaaaaagcctggGgcaaaagaaagaaaagctaa	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33881126	A	A	33881126	1	1	61	0	1	0	0	0	0	0	0	0	8926	1247	43	4		4	LMO2	11	33881126	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	284789	33881126	101125390	4277	72522											
NAT10	55226	broad.mit.edu	37	chr11	34149018	34149018	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttccccatagtatatacaTcctgcagatgctgtgaagct	7	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34149018	C	C	34149018	2	2	61	1	0	0	0	0	0	0	0	1	10268	1432	50	5		5	NAT10	11	34149018	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	267892	34149018	100857498	4278	72523											
NAT10	55226	broad.mit.edu	37	chr11	34162954	34162955	+	Intron	INS	-	TC	TC													ttgctgcatctcatcacacaINStcacacacacacacacacac					rs141705432		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	34162955	TC	TC	34162954	6	5	61	0	1	1	1	0	0	0	0	0	10268	232	8	0		0	NAT10	11	34162954	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	13936	34162954	100843562	4279	72524											
PDHX	8050	broad.mit.edu	37	chr11	34988231	34988231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacaaacgggcaagattaCcgagtccagaccaactccag	9	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34988231	A	A	34988231	3	1	61	1	0	0	0	0	1	0	0	0	11761	507	18	3	827	3	PDHX	11	34988231	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	825277	34988231	100018285	4280	72525											
SLC1A2	6506	broad.mit.edu	37	chr11	35298615	35298615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattcacccttttataatgCaccaaccccactcatgaggg	6	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35298615	A	A	35298615	1	1	61	0	1	0	0	0	0	0	0	0	14545	725	25	3		3	SLC1A2	11	35298615	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	310384	35298615	99707901	4281	72526											
SLC1A2	6506	broad.mit.edu	37	chr11	35323249	35323249	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaaaaaatgtactttttctCcctcattctttaccattccc	1	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35323249	A	A	35323249	1	1	61	0	1	0	0	0	0	0	0	0	14545	870	30	3		3	SLC1A2	11	35323249	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24634	35323249	99683267	4282	72527											
PAMR1	25891	broad.mit.edu	37	chr11	35505539	35505539	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttattatctttcttctcTggccctatattgatttcttc	3	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35505539	C	C	35505539	1	2	61	0	1	0	0	0	0	0	0	0	11507	1595	55	5		5	PAMR1	11	35505539	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	182290	35505539	99500977	4283	72528											
TRIM44	54765	broad.mit.edu	37	chr11	35738647	35738647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtagagaagtacatcagcCaagagcaactgtgagactga	12	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35738647	T	T	35738647	1	4	61	0	1	0	0	0	0	0	0	0	16644	609	21	4		4	TRIM44	11	35738647	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	233108	35738647	99267869	4284	72529											
LDLRAD3	143458	broad.mit.edu	37	chr11	36006904	36006904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttttccttttagacaaGttaggaaatggagtagactc	10	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36006904	T	T	36006904	1	4	61	0	1	0	0	0	0	0	0	0	8779	1044	36	3		3	LDLRAD3	11	36006904	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	268257	36006904	98999612	4285	72530											
RAG1	5896	broad.mit.edu	37	chr11	36597979	36597979	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagccaagattcaatggAattttaagtagggcaaccac	10	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36597979	G	G	36597979	3	3	61	1	0	0	0	0	1	0	0	0	13111	246	9	5	3127	5	RAG1	11	36597979	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	591075	36597979	98408537	4286	72531											
LRRC4C	57689	broad.mit.edu	37	chr11	40137945	40137945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattctaagtgtctttctGgagtaatgtcggtgatatag	10	4	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40137945	T	T	40137945	1	4	61	0	1	0	0	0	0	0	0	0	9095	1363	47	2		2	LRRC4C	11	40137945	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3539966	40137945	94868571	4287	72532											
LRRC4C	57689	broad.mit.edu	37	chr11	40557500	40557500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgattaagcaaactaccaCtctgatgaaaatactctggt	6	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40557500	A	A	40557500	1	1	61	0	1	0	0	0	0	0	0	0	9095	580	20	3		3	LRRC4C	11	40557500	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	419555	40557500	94449016	4288	72533											
LRRC4C	57689	broad.mit.edu	37	chr11	40557524	40557524	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaaatactctggtcacTtcattttttacttaaggtaa	6	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40557524	C	C	40557524	1	2	61	0	1	0	0	0	0	0	0	0	9095	1624	56	5		5	LRRC4C	11	40557524	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	24	40557524	94448992	4289	72534											
LRRC4C	57689	broad.mit.edu	37	chr11	40634643	40634643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcttgctgactaatcaGgattgtggtggctgaaggtt	14	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40634643	T	T	40634643	1	4	61	0	1	0	0	0	0	0	0	0	9095	1015	35	2		2	LRRC4C	11	40634643	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	77119	40634643	94371873	4290	72535											
LRRC4C	57689	broad.mit.edu	37	chr11	40988387	40988387	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggccttgccttcactgaCtagagcatctcctagatacc	7	14	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40988387	T	T	40988387	1	4	61	0	1	0	0	0	0	0	0	0	9095	580	20	4		4	LRRC4C	11	40988387	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	353744	40988387	94018129	4291	72536											
LRRC4C	57689	broad.mit.edu	37	chr11	40988438	40988438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgaatgtgagtcatacCttgtcatgcttttcaaaatg	8	7	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40988438	A	A	40988438	1	1	61	0	1	0	0	0	0	0	0	0	9095	696	24	2		2	LRRC4C	11	40988438	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	51	40988438	94018078	4292	72537											
LRRC4C	57689	broad.mit.edu	37	chr11	41415677	41415677	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttatgcatctgactgtgGaggtttgatgtcaaagtcct	10	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41415677	T	T	41415677	1	4	61	0	1	0	0	0	0	0	0	0	9095	1189	41	3		3	LRRC4C	11	41415677	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	427239	41415677	93590839	4293	72538											
LRRC4C	57689	broad.mit.edu	37	chr11	41423740	41423740	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actcaaagaagagagttcatCtcattatttatccatggaat	6	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41423740	A	A	41423740	1	1	61	0	1	0	0	0	0	0	0	0	9095	928	32	3		3	LRRC4C	11	41423740	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8063	41423740	93582776	4294	72539											
HSD17B12	51144	broad.mit.edu	37	chr11	43772523	43772523	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaggtaggtgattttcaaGatctttccttttaatataaa	7	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43772523	T	T	43772523	1	4	61	0	1	0	0	0	0	0	0	0	7448	957	33	3		3	HSD17B12	11	43772523	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2348783	43772523	91233993	4295	72540											
HSD17B12	51144	broad.mit.edu	37	chr11	43876831	43876831	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattgtaacttggccagatGctccagcatatgcacgttca	9	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43876831	T	T	43876831	1	4	61	0	1	0	0	0	0	0	0	0	7448	1334	46	3		3	HSD17B12	11	43876831	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	104308	43876831	91129685	4296	72541											
ACCSL	390110	broad.mit.edu	37	chr11	44074273	44074273	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagctcccgcctgtatgcAaaggttgagttgattcctgt	10	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44074273	G	G	44074273	2	3	61	1	0	0	0	0	0	0	0	1	134	117	5	5		5	ACCSL	11	44074273	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	197442	44074273	90932243	4297	72542											
TSPAN18	90139	broad.mit.edu	37	chr11	44927878	44927878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggtggggctggctgcgGggaacccctggggaggggct	22	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44927878	T	T	44927878	1	4	61	0	1	0	0	0	0	0	0	0	16767	1247	43	2		2	TSPAN18	11	44927878	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	853605	44927878	90078638	4298	72543											
PRDM11	56981	broad.mit.edu	37	chr11	45124847	45124847	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctttggcgccatctgAtggtagacatatgaaactac	10	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45124847	C	C	45124847	1	2	61	0	1	0	0	0	0	0	0	0	12558	348	12	5		5	PRDM11	11	45124847	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	196969	45124847	89881669	4299	72544											
PRDM11	56981	broad.mit.edu	37	chr11	45143753	45143754	+	Intron	INS	-	AC	AC													acagacagacacacacacagINSacacacacacacacacacac					rs2021225		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	45143754	AC	AC	45143753	6	5	61	0	1	1	1	0	0	0	0	0	12558	957	33	0		0	PRDM11	11	45143753	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	18906	45143753	89862763	4300	72545											
AMBRA1	55626	broad.mit.edu	37	chr11	46534124	46534124	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttcacttacctgcaatacTtccccatcacctgaaccacc	3	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46534124	A	A	46534124	1	1	61	0	1	0	0	0	0	0	0	0	565	1624	56	5		5	AMBRA1	11	46534124	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1390371	46534124	88472392	4301	72546											
KIAA0652	9776	broad.mit.edu	37	chr11	46665838	46665838	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttagattcctataGgcaatggaaactgatctcaa	6	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46665838	A	A	46665838	1	1	61	0	1	0	0	0	0	0	0	0	8258	1015	35	4		4	KIAA0652	11	46665838	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	131714	46665838	88340678	4302	72547											
F2	2147	broad.mit.edu	37	chr11	46748468	46748468	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccctcaggccctgcctgcAggcctgggctttacagatga	11	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46748468	C	C	46748468	1	2	61	0	1	0	0	0	0	0	0	0	5385	203	7	5		5	F2	11	46748468	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	82630	46748468	88258048	4303	72548											
CKAP5	9793	broad.mit.edu	37	chr11	46829544	46829544	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaattcaaaggcctgatggCtgttacaataccagtactgc	9	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46829544	T	T	46829544	1	4	61	0	1	0	0	0	0	0	0	0	3476	812	28	4		4	CKAP5	11	46829544	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	81076	46829544	88176972	4304	72549											
LRP4	4038	broad.mit.edu	37	chr11	46924223	46924223	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaagcttgcaaaagaccaaCtctctgagtccgacacagtt	7	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46924223	G	G	46924223	1	3	61	0	1	0	0	0	0	0	0	0	9046	580	20	4		4	LRP4	11	46924223	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	94679	46924223	88082293	4305	72550											
LRP4	4038	broad.mit.edu	37	chr11	46924422	46924422	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtacactctccaagagcActcactgcacatgtgaagtg	9	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46924422	T	T	46924422	3	4	61	1	0	0	0	0	1	0	0	0	9046	156	6	5	5754	5	LRP4	11	46924422	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	199	46924422	88082094	4306	72551											
PACSIN3	29763	broad.mit.edu	37	chr11	47203976	47203976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccacggtccccctccaCtttcgggcccagtcagccaa	7	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47203976	A	A	47203976	3	1	61	1	0	0	0	0	1	0	0	0	11470	564	20	3	1117	3	PACSIN3	11	47203976	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	279554	47203976	87802540	4307	72552											
MYBPC3	4607	broad.mit.edu	37	chr11	47374199	47374199	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcttccccggctcaggcatCctgagagacgtcacaccagg	10	15	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47374199	G	G	47374199	1	3	61	0	1	0	0	0	0	0	0	0	10107	870	30	4		4	MYBPC3	11	47374199	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	170223	47374199	87632317	4308	72553											
SLC39A13	91252	broad.mit.edu	37	chr11	47381384	47381384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagtctcctgggggacgGggcaggcggtggcatgcacc	19	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47381384	T	T	47381384	1	4	61	0	1	0	0	0	0	0	0	0	14730	1247	43	2		2	SLC39A13	11	47381384	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7185	47381384	87625132	4309	72554											
AGBL2	79841	broad.mit.edu	37	chr11	47681650	47681650	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcagttcccagtcataCatctcccccattataaaatg	4	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47681650	T	T	47681650	1	4	61	0	1	0	0	0	0	0	0	0	376	493	17	4		4	AGBL2	11	47681650	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	300266	47681650	87324866	4310	72555											
AGBL2	79841	broad.mit.edu	37	chr11	47698822	47698822	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgttttttctttgttaCctggattcaatgtcagacaa	6	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47698822	A	A	47698822	5	1	61	1	0	0	0	0	0	0	1	0	376	521	18	3	584	3	AGBL2	11	47698822	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17172	47698822	87307694	4311	72556											
FNBP4	23360	broad.mit.edu	37	chr11	47774472	47774472	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggatcaagtttacctccTgccagtgaacactgagtatc	8	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47774472	A	A	47774472	2	1	61	1	0	0	0	0	0	0	0	1	6025	1567	55	5		5	FNBP4	11	47774472	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	75650	47774472	87232044	4312	72557											
PTPRJ	5795	broad.mit.edu	37	chr11	48161374	48161374	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttggcactgtgatcactcCtggagcggctgacccacagt	12	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48161374	T	T	48161374	1	4	61	0	1	0	0	0	0	0	0	0	12912	696	24	4		4	PTPRJ	11	48161374	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	386902	48161374	86845142	4313	72558											
OR4C3	256144	broad.mit.edu	37	chr11	48347428	48347428	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgttgaatccactcatttaTaccctgagaaatgaagaggt	8	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48347428	A	A	48347428	4	1	61	1	0	0	0	0	0	1	0	0	11144	1413	49	5	938	5	OR4C3	11	48347428	Nonsense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	186054	48347428	86659088	4314	72559											
OR4A47	403253	broad.mit.edu	37	chr11	48510568	48510568	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcatttattcttcatccaTttcccccagattgatttcag	3	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48510568	G	G	48510568	3	3	61	1	0	0	0	0	1	0	0	0	11136	1493	52	5	226	5	OR4A47	11	48510568	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	163140	48510568	86495948	4315	72560											
FOLH1	2346	broad.mit.edu	37	chr11	49207376	49207376	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtcggagtagagaatgactCctttggcccctgccagctgg	14	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49207376	G	G	49207376	3	3	61	1	0	0	0	0	1	0	0	0	6037	855	30	4	1637	4	FOLH1	11	49207376	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	696808	49207376	85799140	4316	72561											
OR4C12	283093	broad.mit.edu	37	chr11	50003201	50003201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagaccacgggatttaaCattgggaccaccatagtata	10	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50003201	A	A	50003201	3	1	61	1	0	0	0	0	1	0	0	0	11140	478	17	3	96	3	OR4C12	11	50003201	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	795825	50003201	85003315	4317	72562											
OR4C12	283093	broad.mit.edu	37	chr11	50003744	50003744	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtgttctgcataggcTtgagccatacacccattaaa	7	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50003744	C	C	50003744	2	2	61	1	0	0	0	0	0	0	0	1	11140	1606	56	5		5	OR4C12	11	50003744	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	543	50003744	85002772	4318	72563											
OR4C12	283093	broad.mit.edu	37	chr11	50003863	50003863	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaggtgggtcaggaagaAgtacatgggggagctcagag	18	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50003863	C	C	50003863	3	2	61	1	0	0	0	0	1	0	0	0	11140	72	3	5	758	5	OR4C12	11	50003863	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	119	50003863	85002653	4319	72564											
TRIM48	79097	broad.mit.edu	37	chr11	55032309	55032309	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaactatagctatcacttatCtccacatgttcagaagcttt	4	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55032309	A	A	55032309	1	1	61	0	1	0	0	0	0	0	0	0	16648	928	32	3		3	TRIM48	11	55032309	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5028446	55032309	79974207	4320	72565											
TRIM48	79097	broad.mit.edu	37	chr11	55032609	55032609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagatggcttcccttgCcagaaaagccagtctctggc	11	11	1	3	rs146290222	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55032609	A	A	55032609	3	1	61	1	0	0	0	0	1	0	0	0	16648	739	26	3	284	3	TRIM48	11	55032609	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	300	55032609	79973907	4321	72566											
TRIM48	79097	broad.mit.edu	37	chr11	55036730	55036730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcaggagtgagtccgtGctgctgcacatgccccagcc	12	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55036730	T	T	55036730	2	4	61	1	0	0	0	0	0	0	0	1	16648	1306	46	3		3	TRIM48	11	55036730	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4121	55036730	79969786	4322	72567											
OR4A15	81328	broad.mit.edu	37	chr11	55136147	55136147	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtttggaagggaaacgaaAagctttctacacctgtgcat	11	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55136147	T	T	55136147	3	4	61	1	0	0	0	0	1	0	0	0	11134	14	1	5	790	5	OR4A15	11	55136147	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	99417	55136147	79870369	4323	72568											
OR4A15	81328	broad.mit.edu	37	chr11	55136265	55136265	+	Silent	SNP	T	A	A													gataaatccatgactgtagtTctaacttttataactcccat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55136265	A	A	55136265	2	1	61	1	0	0	0	0	0	0	0	1	11134	1770	62	5		5	OR4A15	11	55136265	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	118	55136265	79870251	4324	72569	330	2									
OR4A15	81328	broad.mit.edu	37	chr11	55136271	55136271	+	Silent	SNP	T	G	G													tccatgactgtagttctaacTtttataactcccatgctgaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55136271	G	G	55136271	2	3	61	1	0	0	0	0	0	0	0	1	11134	1596	56	5		5	OR4A15	11	55136271	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6	55136271	79870245	4325	72570	330	2									
OR4C6	219432	broad.mit.edu	37	chr11	55432511	55432511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctagatggagaatacatGggtaaaaacaaagaacaaat	9	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55432511	T	T	55432511	1	4	61	0	1	0	0	0	0	0	0	0	11146	1363	47	2		2	OR4C6	11	55432511	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	296240	55432511	79574005	4326	72571											
OR5D13	390142	broad.mit.edu	37	chr11	55541412	55541412	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactcacatattttcttcttGacttatcgttttgtgaatct	4	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55541412	T	T	55541412	3	4	61	1	0	0	0	0	1	0	0	0	11248	1290	45	3	501	3	OR5D13	11	55541412	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	108901	55541412	79465104	4327	72572											
OR5D13	390142	broad.mit.edu	37	chr11	55541613	55541613	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaagatgcgatctgcaAgtgggcgccagaaaactttc	11	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55541613	C	C	55541613	3	2	61	1	0	0	0	0	1	0	0	0	11248	72	3	5	702	5	OR5D13	11	55541613	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	201	55541613	79464903	4328	72573											
OR5L1	219437	broad.mit.edu	37	chr11	55579717	55579717	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaacagtcctttccattTattgcaggcccagttcaggc	9	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55579717	C	C	55579717	3	2	61	1	0	0	0	0	1	0	0	0	11264	1754	61	5	777	5	OR5L1	11	55579717	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	38104	55579717	79426799	4329	72574											
OR5L2	26338	broad.mit.edu	37	chr11	55594667	55594667	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataagttttaggtttttttCtcctctaatcctgcataaat	4	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55594667	A	A	55594667	1	1	61	0	1	0	0	0	0	0	0	0	11265	928	32	3		3	OR5L2	11	55594667	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14950	55594667	79411849	4330	72575											
OR5D16	390144	broad.mit.edu	37	chr11	55606395	55606396	+	Frame_Shift_Ins	INS	-	T	T													tcatcaaaattaacccaaaaINSttgcatacccccatgtattt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55606396	T	T	55606395	7	5	61	1	0	1	1	0	0	0	0	0	11250	98	4	0	170	0	OR5D16	11	55606395	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	11728	55606395	79400121	4331	72576											
OR5D16	390144	broad.mit.edu	37	chr11	55606547	55606547	+	Frame_Shift_Del	DEL	G	-	-													ggtgcaattctttttcttttGcacctttgtagtgactgaat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55606547	-	-	55606547	7	5	61	1	0	1	0	1	0	0	0	0	11250	1319	46	0	322	0	OR5D16	11	55606547	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	152	55606547	79399969	4332	72577											
SPRYD5	84767	broad.mit.edu	37	chr11	55657435	55657435	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtatgagtctctgctgcTgcaagtgtctgagcctgtga	13	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55657435	A	A	55657435	3	1	61	1	0	0	0	0	1	0	0	0	15229	1580	55	5	797	5	SPRYD5	11	55657435	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	50888	55657435	79349081	4333	72578											
OR5W2	390148	broad.mit.edu	37	chr11	55681959	55681959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaattaatgatataaaCagccaagaatacagcaaata	6	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55681959	T	T	55681959	3	4	61	1	0	0	0	0	1	0	0	0	11279	478	17	4	834	4	OR5W2	11	55681959	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24524	55681959	79324557	4334	72579											
OR5I1	10798	broad.mit.edu	37	chr11	55703382	55703382	+	Frame_Shift_Del	DEL	G	-	-													tcacaatatttcagaataaaGgcaaaggatgtgtgaaccag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55703382	-	-	55703382	7	5	61	1	0	1	0	1	0	0	0	0	11258	987	35	0	452	0	OR5I1	11	55703382	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	21423	55703382	79303134	4335	72580											
OR5F1	338674	broad.mit.edu	37	chr11	55761807	55761807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaagaagtacatctgtaGgaagcagccagcaaaagaga	11	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55761807	T	T	55761807	3	4	61	1	0	0	0	0	1	0	0	0	11252	991	35	2	652	2	OR5F1	11	55761807	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	58425	55761807	79244709	4336	72581											
OR5AS1	219447	broad.mit.edu	37	chr11	55798329	55798329	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtctgtgtctgcttcatTgtgttggcatatttcagtgg	12	6	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55798329	C	C	55798329	2	2	61	1	0	0	0	0	0	0	0	1	11240	1800	63	5		5	OR5AS1	11	55798329	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36522	55798329	79208187	4337	72582											
OR5AS1	219447	broad.mit.edu	37	chr11	55798664	55798664	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctatggagcgctcctgtTtatgtacttacagcccacca	7	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55798664	G	G	55798664	3	3	61	1	0	0	0	0	1	0	0	0	11240	1841	64	5	772	5	OR5AS1	11	55798664	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	335	55798664	79207852	4338	72583											
OR8H2	390151	broad.mit.edu	37	chr11	55872411	55872411	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctcactgcaacctccgcCtcccgcgttcaagcaattct	7	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55872411	A	A	55872411	1	1	61	0	1	0	0	0	0	0	0	0	11332	696	24	2		2	OR8H2	11	55872411	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	73747	55872411	79134105	4339	72584											
OR5J2	282775	broad.mit.edu	37	chr11	55944611	55944611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttttgtaggctaaatgCtgtcagccacttcttctgtg	9	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944611	A	A	55944611	3	1	61	1	0	0	0	0	1	0	0	0	11259	797	28	3	520	3	OR5J2	11	55944611	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	72200	55944611	79061905	4340	72585											
OR5J2	282775	broad.mit.edu	37	chr11	55944894	55944894	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccaagctcccagtatttTgtggaacaagagaaagtggt	11	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944894	A	A	55944894	3	1	61	1	0	0	0	0	1	0	0	0	11259	1809	63	5	803	5	OR5J2	11	55944894	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	283	55944894	79061622	4341	72586											
OR5T2	219464	broad.mit.edu	37	chr11	56000231	56000231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgtggttccaaaactaCaagcaagaaacacctgtgct	7	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56000231	A	A	56000231	3	1	61	1	0	0	0	0	1	0	0	0	11276	478	17	3	647	3	OR5T2	11	56000231	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	55337	56000231	79006285	4342	72587											
OR5T3	390154	broad.mit.edu	37	chr11	56020091	56020091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttttgttacttttggaaCtacagaatgttttctcttgg	7	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020091	A	A	56020091	3	1	61	1	0	0	0	0	1	0	0	0	11277	565	20	3	418	3	OR5T3	11	56020091	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19860	56020091	78986425	4343	72588											
OR5T1	390155	broad.mit.edu	37	chr11	56043691	56043691	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaggcatgtcttttgtaatAtgcctcctctgcttgctatt	7	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56043691	G	G	56043691	3	3	61	1	0	0	0	0	1	0	0	0	11275	449	16	5	579	5	OR5T1	11	56043691	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	23600	56043691	78962825	4344	72589											
OR8K3	219473	broad.mit.edu	37	chr11	56086192	56086192	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctatacacagtaatcatgtCacgaagggtatgtcaggtgc	11	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56086192	A	A	56086192	4	1	61	1	0	0	0	0	0	1	0	0	11338	838	29	3	412	3	OR8K3	11	56086192	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42501	56086192	78920324	4345	72590											
OR5M9	390162	broad.mit.edu	37	chr11	56230560	56230560	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggatatagacctccacgtgGacaacggcaatgaaaaagta	10	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56230560	A	A	56230560	2	1	61	1	0	0	0	0	0	0	0	1	11271	1161	41	4		4	OR5M9	11	56230560	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	144368	56230560	78775956	4346	72591											
OR5M10	390167	broad.mit.edu	37	chr11	56344651	56344651	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaggccagcatgataagagGaggatcagcgcagtagaaat	14	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56344651	C	C	56344651	3	2	61	1	0	0	0	0	1	0	0	0	11267	1174	41	4	404	4	OR5M10	11	56344651	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	114091	56344651	78661865	4347	72592											
OR5AP2	338675	broad.mit.edu	37	chr11	56409188	56409188	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggcacaggtggagaagGctttgtgcctgccctctaac	13	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56409188	A	A	56409188	3	1	61	1	0	0	0	0	1	0	0	0	11238	1203	42	4	226	4	OR5AP2	11	56409188	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	64537	56409188	78597328	4348	72593											
OR9G9	504191	broad.mit.edu	37	chr11	56468742	56468742	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgatctacagcctaaggaaTaaggatgtgaaagaggctct	11	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56468742	C	C	56468742	2	2	61	1	0	0	0	0	0	0	0	1	11346	1403	49	5		5	OR9G9	11	56468742	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	59554	56468742	78537774	4349	72594											
OR9G4	283189	broad.mit.edu	37	chr11	56511219	56511219	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaagatgaattcagtcagGatggtgcaatttcccacttc	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56511219	T	T	56511219	2	4	61	1	0	0	0	0	0	0	0	1	11345	1164	41	3		3	OR9G4	11	56511219	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42477	56511219	78495297	4350	72595											
SLC43A3	29015	broad.mit.edu	37	chr11	57175483	57175483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagggaccagaagtctacCgagtttatattctacttttc	8	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57175483	A	A	57175483	1	1	61	0	1	0	0	0	0	0	0	0	14748	667	23	1		1	SLC43A3	11	57175483	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	664264	57175483	77831033	4351	72596											
SLC43A3	29015	broad.mit.edu	37	chr11	57193471	57193471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccttaccagcctgccCtgtggcattgccaatcggcc	9	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57193471	A	A	57193471	3	1	61	1	0	0	0	0	1	0	0	0	14748	681	24	2	1348	2	SLC43A3	11	57193471	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17988	57193471	77813045	4352	72597											
RTN4RL2	349667	broad.mit.edu	37	chr11	57231092	57231092	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccagctctgatactctgTgcatcttgccccagtctcca	6	15	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57231092	C	C	57231092	1	2	61	0	1	0	0	0	0	0	0	0	13843	1711	59	5		5	RTN4RL2	11	57231092	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	37621	57231092	77775424	4353	72598											
CTNND1	1500	broad.mit.edu	37	chr11	57578823	57578823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccattagagcataagatagGgtgaattcagtattctgtca	9	7	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57578823	T	T	57578823	1	4	61	0	1	0	0	0	0	0	0	0	4053	1247	43	2		2	CTNND1	11	57578823	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	347731	57578823	77427693	4354	72599											
OR9I1	219954	broad.mit.edu	37	chr11	57885982	57885982	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacttagatctacatgctcAgggacacctggagtctccta	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57885982	C	C	57885982	3	2	61	1	0	0	0	0	1	0	0	0	11347	188	7	5	13	5	OR9I1	11	57885982	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	307159	57885982	77120534	4355	72600											
OR9I1	219954	broad.mit.edu	37	chr11	57886033	57886033	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggcgtcttttacatctTtgtttcttaagctgtagatc	8	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57886033	G	G	57886033	3	3	61	1	0	0	0	0	1	0	0	0	11347	1841	64	5	64	5	OR9I1	11	57886033	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	51	57886033	77120483	4356	72601											
OR9I1	219954	broad.mit.edu	37	chr11	57886573	57886573	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcataggccatcactgccAgcagaaagcactctgtgcct	9	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57886573	T	T	57886573	3	4	61	1	0	0	0	0	1	0	0	0	11347	188	7	5	604	5	OR9I1	11	57886573	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	540	57886573	77119943	4357	72602											
OR9Q1	219956	broad.mit.edu	37	chr11	57934270	57934270	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccatattcttttcatgctCtgaggatcagtgaaggggac	10	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57934270	A	A	57934270	1	1	61	0	1	0	0	0	0	0	0	0	11349	928	32	3		3	OR9Q1	11	57934270	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47697	57934270	77072246	4358	72603											
OR9Q1	219956	broad.mit.edu	37	chr11	57946994	57946994	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcctgaatgggcactcccTctcttcctcttgtttttatt	5	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57946994	C	C	57946994	2	2	61	1	0	0	0	0	0	0	0	1	11349	1538	54	5		5	OR9Q1	11	57946994	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	12724	57946994	77059522	4359	72604											
OR9Q1	219956	broad.mit.edu	37	chr11	57947584	57947584	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctacctgtttatcatcgTggccatcatggggatccctg	10	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57947584	C	C	57947584	3	2	61	1	0	0	0	0	1	0	0	0	11349	1696	59	5	670	5	OR9Q1	11	57947584	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	590	57947584	77058932	4360	72605											
OR1S2	219958	broad.mit.edu	37	chr11	57970791	57970791	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaccacagtgaataggacaGcaccaatcttatcagtgtcc	7	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57970791	C	C	57970791	3	2	61	1	0	0	0	0	1	0	0	0	11067	971	34	4	117	4	OR1S2	11	57970791	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23207	57970791	77035725	4361	72606											
OR1S1	219959	broad.mit.edu	37	chr11	57982334	57982334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatgagcatcaaaacctcCtctttgtgcttttcttgggt	9	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57982334	T	T	57982334	3	4	61	1	0	0	0	0	1	0	0	0	11066	681	24	4	120	4	OR1S1	11	57982334	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11543	57982334	77024182	4362	72607											
OR5B21	219968	broad.mit.edu	37	chr11	58275240	58275240	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatcataggccatggaggcCaggaggtagcactcaacagt	13	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58275240	A	A	58275240	2	1	61	1	0	0	0	0	0	0	0	1	11245	581	21	2		2	OR5B21	11	58275240	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	292906	58275240	76731276	4363	72608											
GLYATL2	219970	broad.mit.edu	37	chr11	58602367	58602367	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattaccaaacactggaattTcaaaaaataaatataacacc	2	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58602367	A	A	58602367	1	1	61	0	1	0	0	0	0	0	0	0	6545	1798	62	5		5	GLYATL2	11	58602367	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	327127	58602367	76404149	4364	72609											
GLYATL2	219970	broad.mit.edu	37	chr11	58607118	58607118	+	5'UTR	DEL	A	-	-													ttcagcttctttccctcaagAagatgatctaaggaaataaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58607118	-	-	58607118	6	5	61	0	1	1	0	1	0	0	0	0	6545	261	9	0		0	GLYATL2	11	58607118	5'UTR	DEL	A	TCGA-17-Z031-01A-01W-0746-08	4751	58607118	76399398	4365	72610											
OSBP	5007	broad.mit.edu	37	chr11	59361863	59361863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggctctaatatttaaccCgcaaacaacccattctcctt	4	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59361863	A	A	59361863	1	1	61	0	1	0	0	0	0	0	0	0	11367	667	23	1		1	OSBP	11	59361863	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	754745	59361863	75644653	4366	72611											
OR10V1	390201	broad.mit.edu	37	chr11	59481231	59481232	+	Missense_Mutation	DNP	CC	AA	AA													cagatacatcatcaggaagaCcacaaaaatcagcatctgga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	59481232	AA	AA	59481231	3	1	61	1	0	0	0	0	1	0	0	0	11014	507	18	3	845	3	OR10V1	11	59481231	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	119368	59481231	75525285	4367	72612											
STX3	6809	broad.mit.edu	37	chr11	59562827	59562827	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgtttacttggtgtgatcAgagtctgttctttgcagggt	13	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59562827	G	G	59562827	1	3	61	0	1	0	0	0	0	0	0	0	15464	203	7	5		5	STX3	11	59562827	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	81596	59562827	75443689	4368	72613											
STX3	6809	broad.mit.edu	37	chr11	59564806	59564807	+	Frame_Shift_Ins	INS	-	T	T													tgttgctgggcattttagcaINSttgattattggactttccgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59564807	T	T	59564806	7	5	61	1	0	1	1	0	0	0	0	0	15464	204	8	0	875	0	STX3	11	59564806	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	1979	59564806	75441710	4369	72614											
TCN1	6947	broad.mit.edu	37	chr11	59620692	59620692	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaccttggctcagtggttcGcctccactcagaagttccca	8	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59620692	A	A	59620692	2	1	61	1	0	0	0	0	0	0	0	1	15828	1074	38	4		4	TCN1	11	59620692	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	55886	59620692	75385824	4370	72615											
PLAC1L	219990	broad.mit.edu	37	chr11	59812175	59812175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaactctcctttttcaaaCcgagctgtactttaccccaa	5	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59812175	A	A	59812175	3	1	61	1	0	0	0	0	1	0	0	0	12108	507	18	3	285	3	PLAC1L	11	59812175	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	191483	59812175	75194341	4371	72616											
MS4A3	932	broad.mit.edu	37	chr11	59834493	59834493	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggactgcttttctctcaCtaaatatagcagttaatatc	7	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59834493	G	G	59834493	3	3	61	1	0	0	0	0	1	0	0	0	9955	564	20	4	435	4	MS4A3	11	59834493	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22318	59834493	75172023	4372	72617											
MS4A2	2206	broad.mit.edu	37	chr11	59857104	59857104	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcccctttctgtctgtcgAgaatgttgcacagggagtta	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59857104	C	C	59857104	1	2	61	0	1	0	0	0	0	0	0	0	9954	319	11	5		5	MS4A2	11	59857104	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	22611	59857104	75149412	4373	72618											
MS4A2	2206	broad.mit.edu	37	chr11	59861086	59861086	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggtcctaatgtaagtaAgaagccctcttctcctgttc	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59861086	C	C	59861086	1	2	61	0	1	0	0	0	0	0	0	0	9954	87	3	5		5	MS4A2	11	59861086	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3982	59861086	75145430	4374	72619											
MS4A4A	51338	broad.mit.edu	37	chr11	60064813	60064813	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaatggtgagtagagtatcTtttgatataattgaagataa	10	1	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60064813	G	G	60064813	1	3	61	0	1	0	0	0	0	0	0	0	9956	1624	56	5		5	MS4A4A	11	60064813	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	203727	60064813	74941703	4375	72620											
MS4A6E	245802	broad.mit.edu	37	chr11	60102465	60102465	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacccgaacccaccaaccagGggcaggatagcctgaagaaa	10	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60102465	A	A	60102465	3	1	61	1	0	0	0	0	1	0	0	0	9959	1232	43	4	99	4	MS4A6E	11	60102465	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37652	60102465	74904051	4376	72621											
MS4A7	58475	broad.mit.edu	37	chr11	60156904	60156904	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgcagtgagttctgttacTgcaggagcaggcctcttcct	11	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60156904	C	C	60156904	2	2	61	1	0	0	0	0	0	0	0	1	9960	1567	55	5		5	MS4A7	11	60156904	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	54439	60156904	74849612	4377	72622											
MS4A1	931	broad.mit.edu	37	chr11	60231726	60231726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatctcctgtcttgcccacCccctctccatctcccccacc	2	24	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60231726	A	A	60231726	1	1	61	0	1	0	0	0	0	0	0	0	9948	638	22	2		2	MS4A1	11	60231726	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	74822	60231726	74774790	4378	72623											
MS4A12	54860	broad.mit.edu	37	chr11	60264992	60264992	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagcagtcaaccgggtcaAggaaatatacaaatgataaa	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60264992	C	C	60264992	3	2	61	1	0	0	0	0	1	0	0	0	9950	69	3	5	203	5	MS4A12	11	60264992	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	33266	60264992	74741524	4379	72624											
MS4A12	54860	broad.mit.edu	37	chr11	60265158	60265158	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catccaattgctaaaaagttCtgaacgttattctgaaatta	5	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60265158	T	T	60265158	1	4	61	0	1	0	0	0	0	0	0	0	9950	928	32	4		4	MS4A12	11	60265158	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	166	60265158	74741358	4380	72625											
MS4A15	219995	broad.mit.edu	37	chr11	60538719	60538719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcagggtctgccctgccCagggtcctggctgaggcctc	14	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60538719	A	A	60538719	1	1	61	0	1	0	0	0	0	0	0	0	9953	609	21	2		2	MS4A15	11	60538719	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	273561	60538719	74467797	4381	72626											
MS4A15	219995	broad.mit.edu	37	chr11	60542994	60542994	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaccagggcgctgttctcAgattacccacaagggggcac	12	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60542994	C	C	60542994	1	2	61	0	1	0	0	0	0	0	0	0	9953	203	7	5		5	MS4A15	11	60542994	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4275	60542994	74463522	4382	72627											
MS4A10	341116	broad.mit.edu	37	chr11	60563151	60563151	+	Intron	DEL	C	-	-													ctgcaaaggtaagacaagggCttgtcttcccaggaagacaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60563151	-	-	60563151	6	5	61	0	1	1	0	1	0	0	0	0	9949	812	28	0		0	MS4A10	11	60563151	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	20157	60563151	74443365	4383	72628											
ZP1	22917	broad.mit.edu	37	chr11	60635067	60635067	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagccacgacctggggttaCcctgtggccctgctactgct	11	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60635067	G	G	60635067	4	3	61	1	0	0	0	0	0	1	0	0	18344	518	18	4	35	4	ZP1	11	60635067	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	71916	60635067	74371449	4384	72629											
ZP1	22917	broad.mit.edu	37	chr11	60638374	60638374	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctgtcacccagccatccCgtctctgtgctggatggaca	11	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60638374	T	T	60638374	1	4	61	0	1	0	0	0	0	0	0	0	18344	667	23	4		4	ZP1	11	60638374	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3307	60638374	74368142	4385	72630											
ZP1	22917	broad.mit.edu	37	chr11	60638651	60638651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaggctggggcctggtcCcccaccagaaagcctcaccc	10	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60638651	A	A	60638651	1	1	61	0	1	0	0	0	0	0	0	0	18344	638	22	2		2	ZP1	11	60638651	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	277	60638651	74367865	4386	72631											
CD6	923	broad.mit.edu	37	chr11	60783032	60783032	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcctggacaacagagtgaGaccctgtcccagaaaagaaa	10	11	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60783032	T	T	60783032	1	4	61	0	1	0	0	0	0	0	0	0	3058	957	33	3		3	CD6	11	60783032	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	144381	60783032	74223484	4387	72632											
VWCE	220001	broad.mit.edu	37	chr11	61035004	61035004	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttatagaagattctgcctGtgtaggtgcagcctgccaga	12	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61035004	A	A	61035004	3	1	61	1	0	0	0	0	1	0	0	0	17372	1377	48	4	992	4	VWCE	11	61035004	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	251972	61035004	73971512	4388	72633											
DDB1	1642	broad.mit.edu	37	chr11	61088907	61088907	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctaaagtttactttTatactttcagatatgtttaa	3	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61088907	A	A	61088907	1	1	61	0	1	0	0	0	0	0	0	0	4356	1769	61	5		5	DDB1	11	61088907	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	53903	61088907	73917609	4389	72634											
DAK	26007	broad.mit.edu	37	chr11	61106796	61106796	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggcccgggagcaggcCcgggctgaaggcatcccggt	18	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61106796	A	A	61106796	2	1	61	1	0	0	0	0	0	0	0	1	4261	610	22	2		2	DAK	11	61106796	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17889	61106796	73899720	4390	72635											
TMEM138	51524	broad.mit.edu	37	chr11	61133627	61133627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattccataagttcaaagGgaccatcatcctgacagctg	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61133627	T	T	61133627	3	4	61	1	0	0	0	0	1	0	0	0	16176	1232	43	2	245	2	TMEM138	11	61133627	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26831	61133627	73872889	4391	72636											
SYT7	9066	broad.mit.edu	37	chr11	61300423	61300423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccctggcctcccagcCcagttccttggagcagcgca	10	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61300423	A	A	61300423	1	1	61	0	1	0	0	0	0	0	0	0	15598	638	22	2		2	SYT7	11	61300423	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	166796	61300423	73706093	4392	72637											
SCGB1D2	10647	broad.mit.edu	37	chr11	62009929	62009929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggggttaggatctgcaCaaaaccaaaattccaaacct	9	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62009929	A	A	62009929	1	1	61	0	1	0	0	0	0	0	0	0	14009	493	17	3		3	SCGB1D2	11	62009929	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	709506	62009929	72996587	4393	72638											
AHNAK	79026	broad.mit.edu	37	chr11	62289878	62289878	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagatgcaaatcaaagtcaGgcatggagatcttgggggct	13	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62289878	A	A	62289878	3	1	61	1	0	0	0	0	1	0	0	0	414	1000	35	4	5781	4	AHNAK	11	62289878	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	279949	62289878	72716638	4394	72639											
EML3	256364	broad.mit.edu	37	chr11	62375672	62375672	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccacatggactcctcaCcttgatctcagccagcttca	6	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62375672	A	A	62375672	5	1	61	1	0	0	0	0	0	0	1	0	5140	521	18	3	1535	3	EML3	11	62375672	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85794	62375672	72630844	4395	72640											
ZBTB3	79842	broad.mit.edu	37	chr11	62521620	62521620	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccaccaccgagcagccaCagggcgagctccgccccttc	9	21	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62521620	G	G	62521620	1	3	61	0	1	0	0	0	0	0	0	0	17660	493	17	4		4	ZBTB3	11	62521620	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	145948	62521620	72484896	4396	72641											
NXF1	10482	broad.mit.edu	37	chr11	62571028	62571028	+	Frame_Shift_Del	DEL	G	-	-													atcaccccgacggttaggtcGggtggtataggggttgctgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62571028	-	-	62571028	7	5	61	1	0	1	0	1	0	0	0	0	10877	1124	39	0	1758	0	NXF1	11	62571028	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	49408	62571028	72435488	4397	72642											
SLC3A2	6520	broad.mit.edu	37	chr11	62656036	62656036	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctgcctgccagcgccagCctgccagccaaggctgacct	11	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62656036	T	T	62656036	2	4	61	1	0	0	0	0	0	0	0	1	14741	738	26	4		4	SLC3A2	11	62656036	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85008	62656036	72350480	4398	72643											
SLC22A6	9356	broad.mit.edu	37	chr11	62747341	62747341	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtccacagcaccaaagaTcacctggattaggtagatgc	10	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62747341	G	G	62747341	3	3	61	1	0	0	0	0	1	0	0	0	14572	1435	50	5	590	5	SLC22A6	11	62747341	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	91305	62747341	72259175	4399	72644											
SLC22A25	387601	broad.mit.edu	37	chr11	62931929	62931929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcttggatttttttccCttgttaagtgtcaattggtt	8	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62931929	A	A	62931929	1	1	61	0	1	0	0	0	0	0	0	0	14568	696	24	2		2	SLC22A25	11	62931929	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	184588	62931929	72074587	4400	72645											
SLC22A10	387775	broad.mit.edu	37	chr11	63057575	63057575	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aataaaaggaaatattttctCcctttgaacttatctccgta	4	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63057575	T	T	63057575	1	4	61	0	1	0	0	0	0	0	0	0	14554	870	30	4		4	SLC22A10	11	63057575	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	125646	63057575	71948941	4401	72646											
SLC22A9	114571	broad.mit.edu	37	chr11	63138746	63138746	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacagctctctttaagggcAttttttatcaacttatgaaa	5	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63138746	G	G	63138746	1	3	61	0	1	0	0	0	0	0	0	0	14575	232	8	5		5	SLC22A9	11	63138746	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	81171	63138746	71867770	4402	72647											
MARK2	2011	broad.mit.edu	37	chr11	63670188	63670188	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcggaaagccagcagcacAgccaaggtgcctgccagccc	14	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63670188	T	T	63670188	2	4	61	1	0	0	0	0	0	0	0	1	9405	175	7	5		5	MARK2	11	63670188	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	531442	63670188	71336328	4403	72648											
STIP1	10963	broad.mit.edu	37	chr11	63970724	63970724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgcttctggcctccagGggccccccctgcctctttct	11	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63970724	T	T	63970724	1	4	61	0	1	0	0	0	0	0	0	0	15403	1247	43	2		2	STIP1	11	63970724	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	300536	63970724	71035792	4404	72649											
NRXN2	9379	broad.mit.edu	37	chr11	64390746	64390746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagccacagcccctagcCcagccaggtggggaccccag	12	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64390746	A	A	64390746	1	1	61	0	1	0	0	0	0	0	0	0	10761	638	22	2		2	NRXN2	11	64390746	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	420022	64390746	70615770	4405	72650											
NRXN2	9379	broad.mit.edu	37	chr11	64453051	64453051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacaagctcccggcagcCccctctcccaacccccattc	4	24	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64453051	A	A	64453051	1	1	61	0	1	0	0	0	0	0	0	0	10761	638	22	2		2	NRXN2	11	64453051	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	62305	64453051	70553465	4406	72651											
PYGM	5837	broad.mit.edu	37	chr11	64526051	64526051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaatcccccagtccccaCggcttgccccaccccacaca	7	21	0	0	rs149330285	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64526051	A	A	64526051	1	1	61	0	1	0	0	0	0	0	0	0	12970	551	19	3		3	PYGM	11	64526051	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	73000	64526051	70480465	4407	72652											
MRPL49	740	broad.mit.edu	37	chr11	64892873	64892873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccagctgggtgcactggCcctctgcagactgagagcaa	14	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64892873	A	A	64892873	1	1	61	0	1	0	0	0	0	0	0	0	9907	754	26	3		3	MRPL49	11	64892873	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	366822	64892873	70113643	4408	72653											
SPDYC	387778	broad.mit.edu	37	chr11	64938909	64938909	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcagccggcaaggtggGggcaatgggttcctccgttt	17	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64938909	T	T	64938909	2	4	61	1	0	0	0	0	0	0	0	1	15144	1219	43	2		2	SPDYC	11	64938909	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46036	64938909	70067607	4409	72654											
CAPN1	823	broad.mit.edu	37	chr11	64972339	64972339	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtctacgaggtcaggaggGtggatcaccggtggatctca	16	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64972339	C	C	64972339	1	2	61	0	1	0	0	0	0	0	0	0	2648	1276	44	4		4	CAPN1	11	64972339	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33430	64972339	70034177	4410	72655											
POLA2	23649	broad.mit.edu	37	chr11	65048481	65048481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcctgtcactctgctgGgccagattggctgtgatagc	14	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65048481	T	T	65048481	3	4	61	1	0	0	0	0	1	0	0	0	12283	1232	43	2	793	2	POLA2	11	65048481	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	76142	65048481	69958035	4411	72656											
POLA2	23649	broad.mit.edu	37	chr11	65064706	65064706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacggggcagagaggcagaGcccatgcattgctgtgcagg	18	9	0	2	rs7123885	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65064706	T	T	65064706	3	4	61	1	0	0	0	0	1	0	0	0	12283	971	34	3	1833	3	POLA2	11	65064706	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16225	65064706	69941810	4412	72657											
LTBP3	4054	broad.mit.edu	37	chr11	65311246	65311246	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagagcctccccagcctcCcccgccctctctccctgccc	5	24	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65311246	G	G	65311246	1	3	61	0	1	0	0	0	0	0	0	0	9162	638	22	4		4	LTBP3	11	65311246	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	246540	65311246	69695270	4413	72658											
PCNXL3	399909	broad.mit.edu	37	chr11	65387817	65387818	+	Frame_Shift_Ins	INS	-	C	C													accctgccccaggtgtgcggINScgttcctacacctttggcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65387818	C	C	65387817	7	5	61	1	0	1	1	0	0	0	0	0	11687	1190	42	0	2050	0	PCNXL3	11	65387817	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	76571	65387817	69618699	4414	72659											
RELA	5970	broad.mit.edu	37	chr11	65426170	65426170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgctcccaagagcccaccCctgcctcctgatgtatacct	6	18	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65426170	A	A	65426170	1	1	61	0	1	0	0	0	0	0	0	0	13324	638	22	2		2	RELA	11	65426170	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38353	65426170	69580346	4415	72660											
EFEMP2	30008	broad.mit.edu	37	chr11	65638652	65638652	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagctgtcctgatcgtcggGctcatagcctggtgggcagg	15	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65638652	C	C	65638652	3	2	61	1	0	0	0	0	1	0	0	0	4982	1203	42	4	1020	4	EFEMP2	11	65638652	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	212482	65638652	69367864	4416	72661											
FOSL1	8061	broad.mit.edu	37	chr11	65664377	65664377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtactgagggtaggtcagaGgcctggggtaactgctgggc	18	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65664377	T	T	65664377	3	4	61	1	0	0	0	0	1	0	0	0	6045	1000	35	2	627	2	FOSL1	11	65664377	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25725	65664377	69342139	4417	72662											
CATSPER1	117144	broad.mit.edu	37	chr11	65793318	65793318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggtccatgggggaggtagGacccaccatggtgggaagcc	18	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65793318	T	T	65793318	3	4	61	1	0	0	0	0	1	0	0	0	2713	1174	41	3	1857	3	CATSPER1	11	65793318	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	128941	65793318	69213198	4418	72663											
SF3B2	10992	broad.mit.edu	37	chr11	65819874	65819874	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatggcgacggagcatcccGagcctcccaaagcagaattg	12	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65819874	T	T	65819874	4	4	61	1	0	0	0	0	0	1	0	0	14264	1059	37	3	21	3	SF3B2	11	65819874	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26556	65819874	69186642	4419	72664											
SF3B2	10992	broad.mit.edu	37	chr11	65828208	65828208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgtactatgaggttcgGgagggggctgggagaggtca	19	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65828208	T	T	65828208	1	4	61	0	1	0	0	0	0	0	0	0	14264	1247	43	2		2	SF3B2	11	65828208	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8334	65828208	69178308	4420	72665											
PACS1	55690	broad.mit.edu	37	chr11	65998365	65998365	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccctaagtgagaggaccaAcagttccgacagcgagcgct	12	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65998365	G	G	65998365	3	3	61	1	0	0	0	0	1	0	0	0	11466	43	2	5	1630	5	PACS1	11	65998365	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	170157	65998365	69008151	4421	72666											
NPAS4	266743	broad.mit.edu	37	chr11	66188688	66188689	+	Missense_Mutation	DNP	GG	TT	TT													gggcgcctccaaggcgcgccGggaccagatcaacgccgaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	66188689	TT	TT	66188688	3	4	61	1	0	0	0	0	1	0	0	0	10660	1116	39	1	40	1	NPAS4	11	66188688	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	190323	66188688	68817828	4422	72667											
NPAS4	266743	broad.mit.edu	37	chr11	66190613	66190613	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcctaatctacctgggcTttgagcgcagtgaactgctt	11	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66190613	G	G	66190613	3	3	61	1	0	0	0	0	1	0	0	0	10660	1609	56	5	736	5	NPAS4	11	66190613	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1925	66190613	68815903	4423	72668											
DPP3	10072	broad.mit.edu	37	chr11	66262853	66262853	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagattcagagctggtatcgGagcggggagacctgggatag	17	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66262853	T	T	66262853	2	4	61	1	0	0	0	0	0	0	0	1	4768	1161	41	3		3	DPP3	11	66262853	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	72240	66262853	68743663	4424	72669											
ACTN3	89	broad.mit.edu	37	chr11	66321682	66321682	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtttgggaggtcgaggcggGcagaccacttgaaggatcgc	17	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66321682	C	C	66321682	1	2	61	0	1	0	0	0	0	0	0	0	206	1218	42	4		4	ACTN3	11	66321682	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	58829	66321682	68684834	4425	72670											
ACTN3	89	broad.mit.edu	37	chr11	66326838	66326838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcgtggagcacattgccGcgctggcccaggagctcaag	14	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66326838	T	T	66326838	3	4	61	1	0	0	0	0	1	0	0	0	206	1087	38	3	1454	3	ACTN3	11	66326838	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5156	66326838	68679678	4426	72671											
CCDC87	55231	broad.mit.edu	37	chr11	66358815	66358815	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcatcttcttagtattggActgtaaagtgtttgctctct	10	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66358815	G	G	66358815	3	3	61	1	0	0	0	0	1	0	0	0	2890	275	10	5	881	5	CCDC87	11	66358815	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	31977	66358815	68647701	4427	72672											
CCDC87	55231	broad.mit.edu	37	chr11	66359146	66359146	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagtttctatcagagacCcgtacggcagccgcctggac	11	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66359146	A	A	66359146	2	1	61	1	0	0	0	0	0	0	0	1	2890	610	22	2		2	CCDC87	11	66359146	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	331	66359146	68647370	4428	72673											
RBM4	5936	broad.mit.edu	37	chr11	66407690	66407690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggtaaagataacagctGttggctggctggtgatgaag	15	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66407690	T	T	66407690	1	4	61	0	1	0	0	0	0	0	0	0	13242	1392	48	3		3	RBM4	11	66407690	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	48544	66407690	68598826	4429	72674											
SPTBN2	6712	broad.mit.edu	37	chr11	66468181	66468181	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcctggtcccgggtcaccTcctcgcccagggctcgcagc	12	19	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66468181	G	G	66468181	3	3	61	1	0	0	0	0	1	0	0	0	15238	1551	54	5	3871	5	SPTBN2	11	66468181	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	60491	66468181	68538335	4430	72675											
C11orf80	79703	broad.mit.edu	37	chr11	66555568	66555568	+	Intron	DEL	C	-	-													caccagtttaataaacaaatCcagaaatcctggttcttatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66555568	-	-	66555568	6	5	61	0	1	1	0	1	0	0	0	0	1676	870	30	0		0	C11orf80	11	66555568	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	87387	66555568	68450948	4431	72676											
RPS6KB2	6199	broad.mit.edu	37	chr11	67200238	67200239	+	Missense_Mutation	DNP	GG	TT	TT													gctgagatcacgctggccctGggccatctccactcccaggg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	67200239	TT	TT	67200238	3	4	61	1	0	0	0	0	1	0	0	0	13768	1335	47	2	572	2	RPS6KB2	11	67200238	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	644670	67200238	67806278	4432	72677											
NDUFV1	4723	broad.mit.edu	37	chr11	67376216	67376216	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtgtgtgggggcggggcaGatgtggctgtgggagagacc	23	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67376216	A	A	67376216	1	1	61	0	1	0	0	0	0	0	0	0	10394	957	33	4		4	NDUFV1	11	67376216	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	175978	67376216	67630300	4433	72678											
TBX10	347853	broad.mit.edu	37	chr11	67399882	67399882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggccgtggggccacagGcctgaaagagcaagcgagaa	17	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67399882	T	T	67399882	3	4	61	1	0	0	0	0	1	0	0	0	15773	1217	42	3	390	3	TBX10	11	67399882	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23666	67399882	67606634	4434	72679											
ACY3	91703	broad.mit.edu	37	chr11	67410235	67410235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggtcagcgcgggcatgGcaggcacggtgaatgtgaac	18	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67410235	A	A	67410235	3	1	61	1	0	0	0	0	1	0	0	0	227	1203	42	4	43	4	ACY3	11	67410235	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10353	67410235	67596281	4435	72680											
CPT1A	1374	broad.mit.edu	37	chr11	68552485	68552485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggatggtgtctgagcCggccgcaggttggagacaca	17	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68552485	A	A	68552485	1	1	61	0	1	0	0	0	0	0	0	0	3863	667	23	1		1	CPT1A	11	68552485	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1142250	68552485	66454031	4436	72681											
IGHMBP2	3508	broad.mit.edu	37	chr11	68703791	68703791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggtcatctgtgactccCgtactgtcaacaaccatgca	9	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68703791	A	A	68703791	3	1	61	1	0	0	0	0	1	0	0	0	7661	652	23	1	1893	1	IGHMBP2	11	68703791	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	151306	68703791	66302725	4437	72682											
FGF19	9965	broad.mit.edu	37	chr11	69514322	69514322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctcctcctcgaaagcaCagtcttcctccgagtactga	8	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69514322	A	A	69514322	3	1	61	1	0	0	0	0	1	0	0	0	5904	478	17	3	295	3	FGF19	11	69514322	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	810531	69514322	65492194	4438	72683											
SHANK2	22941	broad.mit.edu	37	chr11	70332419	70332419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtcctcttcctgcagggCgttgtccagcttagtggcgt	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70332419	A	A	70332419	3	1	61	1	0	0	0	0	1	0	0	0	14378	768	27	3	1578	3	SHANK2	11	70332419	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	818097	70332419	64674097	4439	72684											
KRTAP5-10	387273	broad.mit.edu	37	chr11	71276782	71276782	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcccgtctgctgctgcaAgcccgtgtgctgctgtgtgc	14	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71276782	C	C	71276782	3	2	61	1	0	0	0	0	1	0	0	0	8631	72	3	5	151	5	KRTAP5-10	11	71276782	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	944363	71276782	63729734	4440	72685											
NUMA1	4926	broad.mit.edu	37	chr11	71740117	71740117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgcctttaggccccacCctggcttatgatgtcccaat	7	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71740117	A	A	71740117	1	1	61	0	1	0	0	0	0	0	0	0	10845	638	22	2		2	NUMA1	11	71740117	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	463335	71740117	63266399	4441	72686											
FOLR2	2350	broad.mit.edu	37	chr11	71927858	71927858	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcgcgttgtctaccctgTaccgaagacagaggctgtgg	14	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71927858	C	C	71927858	1	2	61	0	1	0	0	0	0	0	0	0	6040	1653	57	5		5	FOLR2	11	71927858	5'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	187741	71927858	63078658	4442	72687											
INPPL1	3636	broad.mit.edu	37	chr11	71948775	71948775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggactgccctcggactatGgccggcccctcagcttccct	12	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71948775	T	T	71948775	3	4	61	1	0	0	0	0	1	0	0	0	7831	1348	47	2	3589	2	INPPL1	11	71948775	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20917	71948775	63057741	4443	72688											
CLPB	81570	broad.mit.edu	37	chr11	72074248	72074248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagggaagggaagggagGggaggggacggagggaagga	26	1	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72074248	A	A	72074248	1	1	61	0	1	0	0	0	0	0	0	0	3583	1247	43	4		4	CLPB	11	72074248	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	125473	72074248	62932268	4444	72689											
PDE2A	5138	broad.mit.edu	37	chr11	72291877	72291877	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcaggctgggagaggatgaGactcccagacaccccatgga	13	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72291877	C	C	72291877	1	2	61	0	1	0	0	0	0	0	0	0	11730	957	33	4		4	PDE2A	11	72291877	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	217629	72291877	62714639	4445	72690											
PDE2A	5138	broad.mit.edu	37	chr11	72296672	72296672	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggagatcataggggggtcGgggtgtaggggtcaccctat	18	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72296672	A	A	72296672	1	1	61	0	1	0	0	0	0	0	0	0	11730	1131	39	4		4	PDE2A	11	72296672	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4795	72296672	62709844	4446	72691											
ARAP1	116985	broad.mit.edu	37	chr11	72398509	72398509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacagaaaggtagcgaacCactcccggagctccatctgt	9	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72398509	A	A	72398509	3	1	61	1	0	0	0	0	1	0	0	0	840	595	21	2	204	2	ARAP1	11	72398509	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	101837	72398509	62608007	4447	72692											
ARAP1	116985	broad.mit.edu	37	chr11	72418409	72418409	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccttctctagctctgagtCagcagagaagctggggacat	11	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72418409	G	G	72418409	3	3	61	1	0	0	0	0	1	0	0	0	840	826	29	4	2914	4	ARAP1	11	72418409	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19900	72418409	62588107	4448	72693											
PLEKHB1	58473	broad.mit.edu	37	chr11	73372606	73372606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgggagccgccactgggGcggcgctgggctcgctcatg	18	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73372606	T	T	73372606	3	4	61	1	0	0	0	0	1	0	0	0	12159	1203	42	3	721	3	PLEKHB1	11	73372606	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	954197	73372606	61633910	4449	72694											
P4HA3	283208	broad.mit.edu	37	chr11	74000119	74000119	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcttatcttttatccattaCgtactgtagagaagaaactc	7	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74000119	G	G	74000119	1	3	61	0	1	0	0	0	0	0	0	0	11452	551	19	4		4	P4HA3	11	74000119	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	627513	74000119	61006397	4450	72695											
XRRA1	143570	broad.mit.edu	37	chr11	74555423	74555423	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcagtctcacagcagctCtaggtaaaaggatttgagag	10	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74555423	A	A	74555423	1	1	61	0	1	0	0	0	0	0	0	0	17588	928	32	3		3	XRRA1	11	74555423	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	555304	74555423	60451093	4451	72696											
NEU3	10825	broad.mit.edu	37	chr11	74717042	74717042	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaccatggtgaaggctttcaGagactggccctgagtcgaca	13	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74717042	T	T	74717042	3	4	61	1	0	0	0	0	1	0	0	0	10438	933	33	3	901	3	NEU3	11	74717042	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	161619	74717042	60289474	4452	72697											
SLCO2B1	11309	broad.mit.edu	37	chr11	74842445	74842445	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgggggtggtatcagagcAggaggcctggaccacagcca	16	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74842445	T	T	74842445	1	4	61	0	1	0	0	0	0	0	0	0	14841	203	7	5		5	SLCO2B1	11	74842445	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	125403	74842445	60164071	4453	72698											
SERPINH1	871	broad.mit.edu	37	chr11	75277761	75277762	+	Frame_Shift_Del	DEL	GC	-	-													gctcactcagcaactccacgGcgcgcaacgtgacctggaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75277762	-	-	75277761	7	5	61	1	0	1	0	1	0	0	0	0	14230	1203	42	0	369	0	SERPINH1	11	75277761	Frame_Shift_Del	DEL	GC	TCGA-17-Z031-01A-01W-0746-08	435316	75277761	59728755	4454	72699											
MOGAT2	80168	broad.mit.edu	37	chr11	75431753	75431753	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcctaccctgaccctaacTctggcatgtggtatatcttt	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75431753	A	A	75431753	1	1	61	0	1	0	0	0	0	0	0	0	9789	1566	54	5		5	MOGAT2	11	75431753	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	153992	75431753	59574763	4455	72700											
UVRAG	7405	broad.mit.edu	37	chr11	75760867	75760867	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caactacaatacagtgtcaaAggtaccctgttagggattgt	9	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75760867	T	T	75760867	1	4	61	0	1	0	0	0	0	0	0	0	17235	87	3	5		5	UVRAG	11	75760867	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	329114	75760867	59245649	4456	72701											
WNT11	7481	broad.mit.edu	37	chr11	75907653	75907653	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaccaccgtgtgcatgaGctccaggttgctgcggcaca	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75907653	C	C	75907653	3	2	61	1	0	0	0	0	1	0	0	0	17511	971	34	4	887	4	WNT11	11	75907653	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	146786	75907653	59098863	4457	72702											
PRKRIR	5612	broad.mit.edu	37	chr11	76066548	76066548	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggacaaaattgagcacactCctacattcattctcaaggta	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76066548	A	A	76066548	1	1	61	0	1	0	0	0	0	0	0	0	12632	870	30	3		3	PRKRIR	11	76066548	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	158895	76066548	58939968	4458	72703											
LRRC32	2615	broad.mit.edu	37	chr11	76377176	76377176	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggaaatgggcctgcaGcccatcatagtaggcctctc	13	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76377176	A	A	76377176	1	1	61	0	1	0	0	0	0	0	0	0	9074	986	34	4		4	LRRC32	11	76377176	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	310628	76377176	58629340	4459	72704											
GDPD4	220032	broad.mit.edu	37	chr11	76969651	76969651	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttagctaccttggtagacAggctccccagacagtccttc	8	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76969651	T	T	76969651	1	4	61	0	1	0	0	0	0	0	0	0	6390	203	7	5		5	GDPD4	11	76969651	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	592475	76969651	58036865	4460	72705											
GDPD4	220032	broad.mit.edu	37	chr11	76979888	76979888	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactttttctctccaggggcTtccatggttctcttttcttc	6	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76979888	G	G	76979888	1	3	61	0	1	0	0	0	0	0	0	0	6390	1624	56	5		5	GDPD4	11	76979888	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10237	76979888	58026628	4461	72706											
PAK1	5058	broad.mit.edu	37	chr11	77070048	77070048	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactgcaggagtctcagaCacagccttcacattctgtgc	10	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77070048	A	A	77070048	2	1	61	1	0	0	0	0	0	0	0	1	11493	465	17	3		3	PAK1	11	77070048	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	90160	77070048	57936468	4462	72707											
RSF1	51773	broad.mit.edu	37	chr11	77402204	77402204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacacacatataaaaatacCttcgttcggcacgctctttc	4	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77402204	A	A	77402204	3	1	61	1	0	0	0	0	1	0	0	0	13810	695	24	2	1457	2	RSF1	11	77402204	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	332156	77402204	57604312	4463	72708											
INTS4	92105	broad.mit.edu	37	chr11	77635818	77635818	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatatggagtccctatcagTagggtacttggttaaatttt	9	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77635818	C	C	77635818	3	2	61	1	0	0	0	0	1	0	0	0	7850	1638	57	5	1447	5	INTS4	11	77635818	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	233614	77635818	57370698	4464	72709											
NARS2	79731	broad.mit.edu	37	chr11	78270776	78270776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagatgctgtatcaaatcCctccctaatcccctaaatat	4	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78270776	A	A	78270776	1	1	61	0	1	0	0	0	0	0	0	0	10265	638	22	2		2	NARS2	11	78270776	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	634958	78270776	56735740	4465	72710											
ODZ4	26011	broad.mit.edu	37	chr11	78369524	78369524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccactgaggcccaggatgGccaggtcaccttctgaaggt	12	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78369524	T	T	78369524	3	4	61	1	0	0	0	0	1	0	0	0	10932	1203	42	3	424	3	ODZ4	11	78369524	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98748	78369524	56636992	4466	72711											
ODZ4	26011	broad.mit.edu	37	chr11	78780983	78780983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggcttcctctccttcaCgtccatggcctccggcccgc	9	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78780983	A	A	78780983	3	1	61	1	0	0	0	0	1	0	0	0	10932	536	19	3	8422	3	ODZ4	11	78780983	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	411459	78780983	56225533	4467	72712											
ODZ4	26011	broad.mit.edu	37	chr11	78944460	78944460	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgaagaccagggaggaggCtgctgcaaaggtctagattg	15	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78944460	T	T	78944460	1	4	61	0	1	0	0	0	0	0	0	0	10932	812	28	4		4	ODZ4	11	78944460	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	163477	78944460	56062056	4468	72713											
ODZ4	26011	broad.mit.edu	37	chr11	79053528	79053528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggctgggagtacagcgGgccacacagaaataaggaac	15	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79053528	T	T	79053528	1	4	61	0	1	0	0	0	0	0	0	0	10932	1247	43	2		2	ODZ4	11	79053528	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	109068	79053528	55952988	4469	72714											
RAB30	27314	broad.mit.edu	37	chr11	82693360	82693360	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacattatcagattccttGgctgaggtctccagataata	7	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82693360	T	T	82693360	2	4	61	1	0	0	0	0	0	0	0	1	13027	1335	47	2		2	RAB30	11	82693360	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3639832	82693360	52313156	4470	72715											
RAB30	27314	broad.mit.edu	37	chr11	82708265	82708266	+	Splice_Site	DNP	CC	AA	AA													ttcccttacgagttcccttaCctgagtgaatcttcggacga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	82708266	AA	AA	82708265	5	1	61	1	0	0	0	0	0	0	1	0	13027	521	18	3	533	3	RAB30	11	82708265	Splice_Site	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	14905	82708265	52298251	4471	72716											
DLG2	1740	broad.mit.edu	37	chr11	83203845	83203845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatctccaccactactacCccagtccaagtcaccaccat	2	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83203845	A	A	83203845	1	1	61	0	1	0	0	0	0	0	0	0	4595	638	22	2		2	DLG2	11	83203845	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	495580	83203845	51802671	4472	72717											
DLG2	1740	broad.mit.edu	37	chr11	83361200	83361200	+	Intron	DEL	C	-	-													tgcagtaggctgaatgatggCccccaagtatatctatatcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83361200	-	-	83361200	6	5	61	0	1	1	0	1	0	0	0	0	4595	754	26	0		0	DLG2	11	83361200	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	157355	83361200	51645316	4473	72718											
DLG2	1740	broad.mit.edu	37	chr11	83601878	83601878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcgaaggaaggaaaataCggctagagctaagaatggaa	15	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83601878	A	A	83601878	1	1	61	0	1	0	0	0	0	0	0	0	4595	551	19	3		3	DLG2	11	83601878	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	240678	83601878	51404638	4474	72719											
DLG2	1740	broad.mit.edu	37	chr11	83929401	83929402	+	Intron	DEL	GC	-	-													gggaaggaaggaaagagagaGcgagagaaagggagaaaggg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83929402	-	-	83929401	6	5	61	0	1	1	0	1	0	0	0	0	4595	986	34	0		0	DLG2	11	83929401	Intron	DEL	GC	TCGA-17-Z031-01A-01W-0746-08	327523	83929401	51077115	4475	72720											
DLG2	1740	broad.mit.edu	37	chr11	84642381	84642381	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attttctgatatatgaaattGaatgtctttgtgtcattccc	6	6	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84642381	C	C	84642381	1	2	61	0	1	0	0	0	0	0	0	0	4595	1305	45	4		4	DLG2	11	84642381	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	712980	84642381	50364135	4476	72721											
DLG2	1740	broad.mit.edu	37	chr11	84726237	84726237	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtatctccctttgtaaCatgttttatttggtctttgg	8	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84726237	T	T	84726237	1	4	61	0	1	0	0	0	0	0	0	0	4595	493	17	4		4	DLG2	11	84726237	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83856	84726237	50280279	4477	72722											
DLG2	1740	broad.mit.edu	37	chr11	85296881	85296881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattctcctgcctcagcctcTggagtagctgggactacaga	10	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85296881	C	C	85296881	1	2	61	0	1	0	0	0	0	0	0	0	4595	1595	55	5		5	DLG2	11	85296881	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	570644	85296881	49709635	4478	72723											
SYTL2	54843	broad.mit.edu	37	chr11	85406172	85406173	+	3'UTR	INS	-	A	A													ggatatttgtccacctactcINSagattttcaagatcagattc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85406173	A	A	85406172	6	5	61	0	1	1	1	0	0	0	0	0	15602	841	29	0		0	SYTL2	11	85406172	3'UTR	INS	-	TCGA-17-Z031-01A-01W-0746-08	109291	85406172	49600344	4479	72724											
CCDC83	220047	broad.mit.edu	37	chr11	85613891	85613891	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgggtcatagtatacagcaTgggttatagcatgtttatag	11	4	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85613891	C	C	85613891	1	2	61	0	1	0	0	0	0	0	0	0	2885	1479	51	5		5	CCDC83	11	85613891	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	207719	85613891	49392625	4480	72725											
CCDC83	220047	broad.mit.edu	37	chr11	85623917	85623917	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggatcaactcagtctggTatatttgattttgttctgac	8	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85623917	A	A	85623917	1	1	61	0	1	0	0	0	0	0	0	0	2885	1653	57	5		5	CCDC83	11	85623917	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10026	85623917	49382599	4481	72726											
PICALM	8301	broad.mit.edu	37	chr11	85718543	85718543	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaatactcttcacaacttgTacacaacagatagtggattg	6	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85718543	A	A	85718543	1	1	61	0	1	0	0	0	0	0	0	0	11975	1653	57	5		5	PICALM	11	85718543	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	94626	85718543	49287973	4482	72727											
ME3	10873	broad.mit.edu	37	chr11	86176819	86176819	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcattaagacactgttatcTactaacatcttggtgaagtt	7	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86176819	C	C	86176819	1	2	61	0	1	0	0	0	0	0	0	0	9512	1537	53	5		5	ME3	11	86176819	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	458276	86176819	48829697	4483	72728											
PRSS23	11098	broad.mit.edu	37	chr11	86519020	86519020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcagtagtggagatgGggcccaacaccgagactcag	13	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86519020	T	T	86519020	3	4	61	1	0	0	0	0	1	0	0	0	12726	1232	43	2	337	2	PRSS23	11	86519020	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	342201	86519020	48487496	4484	72729											
FZD4	8322	broad.mit.edu	37	chr11	86662048	86662048	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcggggtgggaggcagTgggttgacgggggtcactta	23	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86662048	C	C	86662048	1	2	61	0	1	0	0	0	0	0	0	0	6192	1711	59	5		5	FZD4	11	86662048	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	143028	86662048	48344468	4485	72730											
TMEM135	65084	broad.mit.edu	37	chr11	86868446	86868446	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacaacattaagaaatggaGaagtaagatgagaattttga	9	3	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86868446	T	T	86868446	4	4	61	1	0	0	0	0	0	1	0	0	16174	943	33	3	478	3	TMEM135	11	86868446	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	206398	86868446	48138070	4486	72731											
TMEM135	65084	broad.mit.edu	37	chr11	86972003	86972003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctagttctggtcctcgtGtcacactctgaatagcagag	10	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86972003	T	T	86972003	1	4	61	0	1	0	0	0	0	0	0	0	16174	1392	48	3		3	TMEM135	11	86972003	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	103557	86972003	48034513	4487	72732											
TMEM135	65084	broad.mit.edu	37	chr11	87024442	87024442	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaaataaaataactgaaGtcattgtattttctccttaa	4	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87024442	T	T	87024442	1	4	61	0	1	0	0	0	0	0	0	0	16174	1044	36	3		3	TMEM135	11	87024442	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	52439	87024442	47982074	4488	72733											
GRM5	2915	broad.mit.edu	37	chr11	88386205	88386205	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacctgtttatcaccataagTggcaatatccactctactta	4	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88386205	A	A	88386205	1	1	61	0	1	0	0	0	0	0	0	0	6866	1711	59	5		5	GRM5	11	88386205	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1361763	88386205	46620311	4489	72734											
GRM5	2915	broad.mit.edu	37	chr11	88386306	88386306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggaaccttagccttatgCattttaaatgaaataataaa	5	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88386306	A	A	88386306	1	1	61	0	1	0	0	0	0	0	0	0	6866	725	25	3		3	GRM5	11	88386306	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	101	88386306	46620210	4490	72735											
GRM5	2915	broad.mit.edu	37	chr11	88582965	88582965	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttaagctctatttccacTgcacagattaagctttgaaa	5	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88582965	C	C	88582965	1	2	61	0	1	0	0	0	0	0	0	0	6866	1595	55	5		5	GRM5	11	88582965	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	196659	88582965	46423551	4491	72736											
TYR	7299	broad.mit.edu	37	chr11	88911944	88911944	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttctcctcttggcaggtaAgatatgctagatatacgatg	9	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88911944	T	T	88911944	1	4	61	0	1	0	0	0	0	0	0	0	16939	87	3	5		5	TYR	11	88911944	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	328979	88911944	46094572	4492	72737											
NOX4	50507	broad.mit.edu	37	chr11	89125255	89125255	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctccaataacctgctttacTacaattatccttttttctcc	1	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89125255	A	A	89125255	1	1	61	0	1	0	0	0	0	0	0	0	10653	1537	53	5		5	NOX4	11	89125255	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	213311	89125255	45881261	4493	72738											
NOX4	50507	broad.mit.edu	37	chr11	89190294	89190294	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgatgcacactagccaaccTgcagccttgacccactacag	7	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89190294	A	A	89190294	1	1	61	0	1	0	0	0	0	0	0	0	10653	1595	55	5		5	NOX4	11	89190294	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	65039	89190294	45816222	4494	72739											
FOLH1B	219595	broad.mit.edu	37	chr11	89403576	89403576	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaaaagtcaagatgcacatCcactctaccaatgaagtgac	7	10	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89403576	A	A	89403576	2	1	61	1	0	0	0	0	0	0	0	1	6038	845	30	3		3	FOLH1B	11	89403576	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	213282	89403576	45602940	4495	72740											
FOLH1B	219595	broad.mit.edu	37	chr11	89407164	89407164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccaaaccatcaatgaCttttttttttttccccaatc	1	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89407164	A	A	89407164	1	1	61	0	1	0	0	0	0	0	0	0	6038	580	20	3		3	FOLH1B	11	89407164	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3588	89407164	45599352	4496	72741											
UBTFL1	642623	broad.mit.edu	37	chr11	89819134	89819134	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaatggctttgcctagaaGccaaggccattggtccaaca	9	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89819134	A	A	89819134	3	1	61	1	0	0	0	0	1	0	0	0	17036	971	34	4	19	4	UBTFL1	11	89819134	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	411970	89819134	45187382	4497	72742											
NAALAD2	10003	broad.mit.edu	37	chr11	89867913	89867913	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaggcgccccaagctcgGtcctcaagaagccatggcgg	13	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89867913	T	T	89867913	1	4	61	0	1	0	0	0	0	0	0	0	10222	1276	44	3		3	NAALAD2	11	89867913	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	48779	89867913	45138603	4498	72743											
NAALAD2	10003	broad.mit.edu	37	chr11	89903401	89903401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtacttatttttaagctgGtgagagaacataatagaatc	9	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89903401	T	T	89903401	1	4	61	0	1	0	0	0	0	0	0	0	10222	1276	44	3		3	NAALAD2	11	89903401	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	35488	89903401	45103115	4499	72744											
FAT3	120114	broad.mit.edu	37	chr11	92085369	92085369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttttggccactgtctccCaggggctgccagggactgga	14	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92085369	A	A	92085369	3	1	61	1	0	0	0	0	1	0	0	0	5748	595	21	2	93	2	FAT3	11	92085369	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2181968	92085369	42921147	4500	72745											
FAT3	120114	broad.mit.edu	37	chr11	92088162	92088162	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcttggcttgagacccatGatccagatcttggactgggg	13	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92088162	C	C	92088162	3	2	61	1	0	0	0	0	1	0	0	0	5748	1290	45	4	2886	4	FAT3	11	92088162	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2793	92088162	42918354	4501	72746											
FAT3	120114	broad.mit.edu	37	chr11	92569898	92569898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaggacagtttccttccCatccacatccaccactttcc	4	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92569898	A	A	92569898	1	1	61	0	1	0	0	0	0	0	0	0	5748	609	21	2		2	FAT3	11	92569898	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	481736	92569898	42436618	4502	72747											
FAT3	120114	broad.mit.edu	37	chr11	92616192	92616192	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcccgcaacaacatcacGctagtgcaggacccggccac	8	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92616192	T	T	92616192	2	4	61	1	0	0	0	0	0	0	0	1	5748	1074	38	3		3	FAT3	11	92616192	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46294	92616192	42390324	4503	72748											
FAT3	120114	broad.mit.edu	37	chr11	92616245	92616245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaagagcaatggcatccCgttccggaacctgcgcggca	11	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92616245	A	A	92616245	3	1	61	1	0	0	0	0	1	0	0	0	5748	652	23	1	12713	1	FAT3	11	92616245	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53	92616245	42390271	4504	72749											
CCDC67	159989	broad.mit.edu	37	chr11	93088627	93088627	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggattgggaaagaaagatGcgggctttggagacacgatt	15	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93088627	A	A	93088627	3	1	61	1	0	0	0	0	1	0	0	0	2867	1319	46	4	126	4	CCDC67	11	93088627	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	472382	93088627	41917889	4505	72750											
HEPHL1	341208	broad.mit.edu	37	chr11	93803634	93803634	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcgctactttatagcagcTgaaaaaattctttgggatta	9	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93803634	A	A	93803634	2	1	61	1	0	0	0	0	0	0	0	1	7122	1567	55	5		5	HEPHL1	11	93803634	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	715007	93803634	41202882	4506	72751											
HEPHL1	341208	broad.mit.edu	37	chr11	93806538	93806538	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgccaacaaagccgacaaGgtctatagcattttacccca	6	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93806538	A	A	93806538	2	1	61	1	0	0	0	0	0	0	0	1	7122	991	35	4		4	HEPHL1	11	93806538	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2904	93806538	41199978	4507	72752											
HEPHL1	341208	broad.mit.edu	37	chr11	93808322	93808322	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgttttgaataattgTtttgtttatatcctcaggat	7	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93808322	G	G	93808322	1	3	61	0	1	0	0	0	0	0	0	0	7122	1740	60	5		5	HEPHL1	11	93808322	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1784	93808322	41198194	4508	72753											
PANX1	24145	broad.mit.edu	37	chr11	93912879	93912879	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacattagctgccgcctgctGacactcatcattatactgtt	6	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93912879	C	C	93912879	2	2	61	1	0	0	0	0	0	0	0	1	11514	1277	45	4		4	PANX1	11	93912879	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	104557	93912879	41093637	4509	72754											
FOLR4	390243	broad.mit.edu	37	chr11	94036135	94036135	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctggccggcctgatggttCtctgaaaggcagcctcactc	12	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94036135	A	A	94036135	1	1	61	0	1	0	0	0	0	0	0	0	6042	928	32	3		3	FOLR4	11	94036135	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	123256	94036135	40970381	4510	72755											
ENDOD1	23052	broad.mit.edu	37	chr11	94862456	94862456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggtgctcaaggtcgtgGccaaagtcatcagggctctc	14	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94862456	T	T	94862456	3	4	61	1	0	0	0	0	1	0	0	0	5156	1203	42	3	1222	3	ENDOD1	11	94862456	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	826321	94862456	40144060	4511	72756											
MAML2	84441	broad.mit.edu	37	chr11	95815972	95815972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagcacgaaggcagcagCagtggaggcagagacgtgga	16	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95815972	A	A	95815972	1	1	61	0	1	0	0	0	0	0	0	0	9298	725	25	3		3	MAML2	11	95815972	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	953516	95815972	39190544	4512	72757											
MAML2	84441	broad.mit.edu	37	chr11	95822777	95822777	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttatcagaatgtgtatacttCcctcctaaatgtgaatgctt	6	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95822777	A	A	95822777	1	1	61	0	1	0	0	0	0	0	0	0	9298	870	30	3		3	MAML2	11	95822777	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6805	95822777	39183739	4513	72758											
MAML2	84441	broad.mit.edu	37	chr11	95825224	95825224	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgTtgttgctgttgttgttgctg	14	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95825224	C	C	95825224	2	2	61	1	0	0	0	0	0	0	0	1	9298	1722	60	5		5	MAML2	11	95825224	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2447	95825224	39181292	4514	72759											
MAML2	84441	broad.mit.edu	37	chr11	95883070	95883070	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcctggctctgcctgtctCtctgtctttatttgatccac	7	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95883070	A	A	95883070	1	1	61	0	1	0	0	0	0	0	0	0	9298	928	32	3		3	MAML2	11	95883070	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	57846	95883070	39123446	4515	72760											
CNTN5	53942	broad.mit.edu	37	chr11	98942681	98942681	+	Intron	DEL	A	-	-													tattcactggtgaatacaatAaaaaaaaagaaggaagtaat					rs35059303		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98942681	-	-	98942681	6	5	61	0	1	1	0	1	0	0	0	0	3676	377	13	0		0	CNTN5	11	98942681	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	3059611	98942681	36063835	4516	72761											
CNTN5	53942	broad.mit.edu	37	chr11	99223662	99223662	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatgcatagagatggctgtCtgcctcactgaccaggcaag	11	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99223662	A	A	99223662	1	1	61	0	1	0	0	0	0	0	0	0	3676	928	32	3		3	CNTN5	11	99223662	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	280981	99223662	35782854	4517	72762											
CNTN5	53942	broad.mit.edu	37	chr11	99786983	99786983	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacatttcaggtgaaatgTgcatggttttcttgacatct	9	6	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99786983	A	A	99786983	1	1	61	0	1	0	0	0	0	0	0	0	3676	1711	59	5		5	CNTN5	11	99786983	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	563321	99786983	35219533	4518	72763											
CNTN5	53942	broad.mit.edu	37	chr11	99959983	99959983	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagacctttatcagataggcAgattgcaaaaatttcctccc	6	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99959983	T	T	99959983	1	4	61	0	1	0	0	0	0	0	0	0	3676	203	7	5		5	CNTN5	11	99959983	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	173000	99959983	35046533	4519	72764											
CNTN5	53942	broad.mit.edu	37	chr11	99993507	99993507	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaacatggagtggaaggaAaacttacaggttaggctaca	11	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99993507	C	C	99993507	1	2	61	0	1	0	0	0	0	0	0	0	3676	29	1	5		5	CNTN5	11	99993507	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	33524	99993507	35013009	4520	72765											
CNTN5	53942	broad.mit.edu	37	chr11	100114241	100114241	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaggtgctgcttctcatTtatggagccttgccctgagt	10	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100114241	C	C	100114241	1	2	61	0	1	0	0	0	0	0	0	0	3676	1856	64	5		5	CNTN5	11	100114241	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	120734	100114241	34892275	4521	72766											
TMEM133	83935	broad.mit.edu	37	chr11	100863141	100863141	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagaagttactttccccttGactaaaggtttccccttagg	7	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100863141	T	T	100863141	3	4	61	1	0	0	0	0	1	0	0	0	16172	1281	45	3	104	3	TMEM133	11	100863141	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	748900	100863141	34143375	4522	72767											
PGR	5241	broad.mit.edu	37	chr11	100962660	100962660	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatctaagattcactggaAattctatgcagtgacaactg	7	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100962660	C	C	100962660	1	2	61	0	1	0	0	0	0	0	0	0	11900	29	1	5		5	PGR	11	100962660	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	99519	100962660	34043856	4523	72768											
TRPC6	7225	broad.mit.edu	37	chr11	101374793	101374793	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attggccagaactgccagttCattgctaagttctaaagccg	9	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101374793	A	A	101374793	4	1	61	1	0	0	0	0	0	1	0	0	16708	835	29	3	1936	3	TRPC6	11	101374793	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	412133	101374793	33631723	4524	72769											
TRPC6	7225	broad.mit.edu	37	chr11	101374826	101374827	+	Missense_Mutation	DNP	CT	AA	AA													taaagccgtcatgactggatCttcactagacaatgacaggt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	101374827	AA	AA	101374826	3	1	61	1	0	0	0	0	1	0	0	0	16708	913	32	3	1969	3	TRPC6	11	101374826	Missense_Mutation	DNP	CT	TCGA-17-Z031-01A-01W-0746-08	33	101374826	33631690	4525	72770											
ANGPTL5	253935	broad.mit.edu	37	chr11	101762169	101762169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttgctagaccacactcGttaaaccaccagccggtctt	7	13	1	2	rs139900371	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101762169	T	T	101762169	3	4	61	1	0	0	0	0	1	0	0	0	617	1136	40	3	162	3	ANGPTL5	11	101762169	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	387343	101762169	33244347	4526	72771											
C11orf70	85016	broad.mit.edu	37	chr11	101953855	101953855	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcatgaacagacattttcTtactttattgtggatcctat	5	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101953855	G	G	101953855	2	3	61	1	0	0	0	0	0	0	0	1	1671	1596	56	5		5	C11orf70	11	101953855	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	191686	101953855	33052661	4527	72772											
MMP27	64066	broad.mit.edu	37	chr11	102565841	102565841	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggtgcctgtgttaaacaAaaaacactttacacatgcag	7	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102565841	C	C	102565841	1	2	61	0	1	0	0	0	0	0	0	0	9758	29	1	5		5	MMP27	11	102565841	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	611986	102565841	32440675	4528	72773											
MMP27	64066	broad.mit.edu	37	chr11	102573687	102573687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatagctttgctctctGttgaaaaccttacctcgagt	6	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102573687	T	T	102573687	1	4	61	0	1	0	0	0	0	0	0	0	9758	1392	48	3		3	MMP27	11	102573687	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7846	102573687	32432829	4529	72774											
MMP8	4317	broad.mit.edu	37	chr11	102595616	102595616	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaactctacccctcctgGctttctttctgtccctctgg	5	16	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102595616	T	T	102595616	1	4	61	0	1	0	0	0	0	0	0	0	9762	1218	42	3		3	MMP8	11	102595616	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21929	102595616	32410900	4530	72775											
DYNC2H1	79659	broad.mit.edu	37	chr11	103023009	103023009	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcaccaacttatgattaaaGaccaggttagaatcttttaa	6	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103023009	C	C	103023009	3	2	61	1	0	0	0	0	1	0	0	0	4886	942	33	4	3173	4	DYNC2H1	11	103023009	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	427393	103023009	31983507	4531	72776											
PDGFD	80310	broad.mit.edu	37	chr11	103780540	103780540	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtggccaggctcaaacTgtaatacctaggacaagaag	11	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103780540	A	A	103780540	3	1	61	1	0	0	0	0	1	0	0	0	11754	1580	55	5	121	5	PDGFD	11	103780540	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	757531	103780540	31225976	4532	72777											
PDGFD	80310	broad.mit.edu	37	chr11	103780824	103780827	+	Intron	DEL	ATTA	-	-													atgtgtcttagcaggtatttAttaatagctttctaagggcc					rs147588016		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103780827	-	-	103780824	6	5	61	0	1	1	0	1	0	0	0	0	11754	464	16	0		0	PDGFD	11	103780824	Intron	DEL	ATTA	TCGA-17-Z031-01A-01W-0746-08	284	103780824	31225692	4533	72778											
CASP5	838	broad.mit.edu	37	chr11	104879789	104879789	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagacaaagctctgtaatgTgaaacacccttgaaaataca	6	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104879789	C	C	104879789	1	2	61	0	1	0	0	0	0	0	0	0	2700	1711	59	5		5	CASP5	11	104879789	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1098965	104879789	30126727	4534	72779											
CASP1	834	broad.mit.edu	37	chr11	104963856	104963856	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatgactcataacaaaaagAgccctttgcaggatgtctcc	7	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104963856	T	T	104963856	1	4	61	0	1	0	0	0	0	0	0	0	2694	319	11	5		5	CASP1	11	104963856	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	84067	104963856	30042660	4535	72780											
GRIA4	2893	broad.mit.edu	37	chr11	105624095	105624095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttttatcttgactctggGgaaaaatttctaattaaacg	6	5	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105624095	A	A	105624095	1	1	61	0	1	0	0	0	0	0	0	0	6836	1247	43	4		4	GRIA4	11	105624095	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	660239	105624095	29382421	4536	72781											
GRIA4	2893	broad.mit.edu	37	chr11	105836837	105836837	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacagtatgtaaagtaataGgtgcatctgctgggagactt	11	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105836837	A	A	105836837	1	1	61	0	1	0	0	0	0	0	0	0	6836	1015	35	4		4	GRIA4	11	105836837	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	212742	105836837	29169679	4537	72782											
AASDHPPT	60496	broad.mit.edu	37	chr11	105962339	105962339	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctgaaagtgaaatcaGggctactatgagagcatgta	11	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105962339	C	C	105962339	1	2	61	0	1	0	0	0	0	0	0	0	23	1015	35	4		4	AASDHPPT	11	105962339	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	125502	105962339	29044177	4538	72783											
GUCY1A2	2977	broad.mit.edu	37	chr11	106766303	106766303	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacatgctctcttgccagcTgccatgtaagacataccttt	7	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106766303	A	A	106766303	1	1	61	0	1	0	0	0	0	0	0	0	6958	1595	55	5		5	GUCY1A2	11	106766303	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	803964	106766303	28240213	4539	72784											
CWF19L2	143884	broad.mit.edu	37	chr11	107274415	107274415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcaggaatgatgctgcCctgactgcactcggcttgct	10	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107274415	A	A	107274415	1	1	61	0	1	0	0	0	0	0	0	0	4105	638	22	2		2	CWF19L2	11	107274415	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	508112	107274415	27732101	4540	72785											
CWF19L2	143884	broad.mit.edu	37	chr11	107288935	107288935	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttaccatattccccatcatCtctgctttgataatcttggc	4	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107288935	A	A	107288935	3	1	61	1	0	0	0	0	1	0	0	0	4105	912	32	3	1212	3	CWF19L2	11	107288935	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14520	107288935	27717581	4541	72786											
ELMOD1	55531	broad.mit.edu	37	chr11	107463302	107463302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtagttacagcagacttaGtcattccctcccccagaagt	7	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107463302	T	T	107463302	1	4	61	0	1	0	0	0	0	0	0	0	5110	1044	36	3		3	ELMOD1	11	107463302	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	174367	107463302	27543214	4542	72787											
ELMOD1	55531	broad.mit.edu	37	chr11	107501118	107501118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccagagttctattggaaGggtgctgtgttttgtttttc	11	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107501118	T	T	107501118	1	4	61	0	1	0	0	0	0	0	0	0	5110	1015	35	2		2	ELMOD1	11	107501118	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37816	107501118	27505398	4543	72788											
ATM	472	broad.mit.edu	37	chr11	108098693	108098693	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgatattacttttgtgtGtaagtcttaacatttatctt	6	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108098693	C	C	108098693	1	2	61	0	1	0	0	0	0	0	0	0	1113	1392	48	4		4	ATM	11	108098693	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	597575	108098693	26907823	4544	72789											
EXPH5	23086	broad.mit.edu	37	chr11	108381673	108381673	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatctgactgagtctcctCaccaagctgtagtttatgca	7	11	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108381673	A	A	108381673	4	1	61	1	0	0	0	0	0	1	0	0	5365	835	29	3	1412	3	EXPH5	11	108381673	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	282980	108381673	26624843	4545	72790											
DDX10	1662	broad.mit.edu	37	chr11	108752962	108752962	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctataccataaaacctAcatgaaatggtgtttgttca	5	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108752962	T	T	108752962	1	4	61	0	1	0	0	0	0	0	0	0	4375	406	14	5		5	DDX10	11	108752962	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	371289	108752962	26253554	4546	72791											
RDX	5962	broad.mit.edu	37	chr11	110108528	110108528	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atacctctttgttttcttgaGacagggtctcgctctgttgc	9	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110108528	A	A	110108528	1	1	61	0	1	0	0	0	0	0	0	0	13306	957	33	4		4	RDX	11	110108528	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1355566	110108528	24897988	4547	72792											
FDX1	2230	broad.mit.edu	37	chr11	110327530	110327530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgagccactgtgcccgGcctcacttatgtattctaat	10	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110327530	T	T	110327530	1	4	61	0	1	0	0	0	0	0	0	0	5861	1218	42	3		3	FDX1	11	110327530	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	219002	110327530	24678986	4548	72793											
ARHGAP20	57569	broad.mit.edu	37	chr11	110451883	110451883	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcactgcatggtgcatcaAcatcctcatttagctcattt	6	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110451883	C	C	110451883	3	2	61	1	0	0	0	0	1	0	0	0	872	43	2	5	1792	5	ARHGAP20	11	110451883	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	124353	110451883	24554633	4549	72794											
ARHGAP20	57569	broad.mit.edu	37	chr11	110462454	110462454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgtgaattctgtctgcaGggcaaattctgctttatctg	9	7	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110462454	T	T	110462454	1	4	61	0	1	0	0	0	0	0	0	0	872	1015	35	2		2	ARHGAP20	11	110462454	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10571	110462454	24544062	4550	72795											
ARHGAP20	57569	broad.mit.edu	37	chr11	110505892	110505892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatactaaaagtatgaggacCataccctatcctaatagctc	5	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110505892	A	A	110505892	1	1	61	0	1	0	0	0	0	0	0	0	872	609	21	2		2	ARHGAP20	11	110505892	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	43438	110505892	24500624	4551	72796											
C11orf53	341032	broad.mit.edu	37	chr11	111154754	111154754	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaaccgaggccttgacCgccctgggaggaattttctg	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111154754	G	G	111154754	1	3	61	0	1	0	0	0	0	0	0	0	1660	667	23	4		4	C11orf53	11	111154754	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	648862	111154754	23851762	4552	72797											
POU2AF1	5450	broad.mit.edu	37	chr11	111225781	111225781	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagacacaaagacagtccGggctccacacaacagctttg	8	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111225781	A	A	111225781	1	1	61	0	1	0	0	0	0	0	0	0	12366	1131	39	4		4	POU2AF1	11	111225781	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71027	111225781	23780735	4553	72798											
POU2AF1	5450	broad.mit.edu	37	chr11	111226040	111226040	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaagtgttagagtccttctCctgaatgctctgcgagtcat	9	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111226040	T	T	111226040	1	4	61	0	1	0	0	0	0	0	0	0	12366	870	30	4		4	POU2AF1	11	111226040	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	259	111226040	23780476	4554	72799											
BTG4	54766	broad.mit.edu	37	chr11	111368797	111368797	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgagaaaaatctacattActttccacacatgccctttc	5	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111368797	T	T	111368797	3	4	61	1	0	0	0	0	1	0	0	0	1566	388	14	5	450	5	BTG4	11	111368797	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	142757	111368797	23637719	4555	72800											
LAYN	143903	broad.mit.edu	37	chr11	111428588	111428588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgctttactgtctgtacGtggaagattttaaaacaact	7	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111428588	T	T	111428588	1	4	61	0	1	0	0	0	0	0	0	0	8721	1160	40	3		3	LAYN	11	111428588	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59791	111428588	23577928	4556	72801											
TEX12	56158	broad.mit.edu	37	chr11	112039957	112039957	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttgtacctaaatctggcAttgttctaagctttgtagct	8	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112039957	C	C	112039957	1	2	61	0	1	0	0	0	0	0	0	0	15897	232	8	5		5	TEX12	11	112039957	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	611369	112039957	22966559	4557	72802											
NCAM1	4684	broad.mit.edu	37	chr11	113105836	113105836	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggcggcgctcaatggcaAagggctgggtgagatcagcg	18	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113105836	T	T	113105836	3	4	61	1	0	0	0	0	1	0	0	0	10297	14	1	5	1830	5	NCAM1	11	113105836	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1065879	113105836	21900680	4558	72803											
ANKK1	255239	broad.mit.edu	37	chr11	113270007	113270007	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcactttgcagcccagaatgGggatgacggcactgcgcgcc	14	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113270007	A	A	113270007	3	1	61	1	0	0	0	0	1	0	0	0	631	1232	43	4	1346	4	ANKK1	11	113270007	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	164171	113270007	21736509	4559	72804											
HTR3B	9177	broad.mit.edu	37	chr11	113775602	113775602	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaggagaaattgagcgGcattccatctggtaggcaag	13	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113775602	A	A	113775602	1	1	61	0	1	0	0	0	0	0	0	0	7515	1218	42	4		4	HTR3B	11	113775602	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	505595	113775602	21230914	4560	72805											
ZBTB16	7704	broad.mit.edu	37	chr11	114018944	114018944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatggccccagggaatgcCattgtccttcctcatatttt	8	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114018944	T	T	114018944	1	4	61	0	1	0	0	0	0	0	0	0	17652	609	21	4		4	ZBTB16	11	114018944	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	243342	114018944	20987572	4561	72806											
ZBTB16	7704	broad.mit.edu	37	chr11	114099620	114099620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctggtgtgaatgcagGcctggcgggcgccctggtgt	16	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114099620	T	T	114099620	1	4	61	0	1	0	0	0	0	0	0	0	17652	1218	42	3		3	ZBTB16	11	114099620	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	80676	114099620	20906896	4562	72807											
APOA4	337	broad.mit.edu	37	chr11	116691565	116691565	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtccacgagggtggggcCagtgcaccaggggcagctca	18	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116691565	G	G	116691565	1	3	61	0	1	0	0	0	0	0	0	0	785	609	21	4		4	APOA4	11	116691565	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2591945	116691565	18314951	4563	72808											
APOC3	345	broad.mit.edu	37	chr11	116703474	116703474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttgcttcccctgactgAtttaggggctgggtgaccga	13	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116703474	G	G	116703474	1	3	61	0	1	0	0	0	0	0	0	0	801	348	12	5		5	APOC3	11	116703474	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11909	116703474	18303042	4564	72809											
CEP164	22897	broad.mit.edu	37	chr11	117265080	117265080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaggagaggaagcagcgGgctgagcttctggggcacct	17	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117265080	T	T	117265080	2	4	61	1	0	0	0	0	0	0	0	1	3279	1219	43	2		2	CEP164	11	117265080	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	561606	117265080	17741436	4565	72810											
CEP164	22897	broad.mit.edu	37	chr11	117278678	117278678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatgaagtcggccatgcGgaaaggccacaacctgctga	13	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117278678	T	T	117278678	3	4	61	1	0	0	0	0	1	0	0	0	3279	1116	39	1	3641	1	CEP164	11	117278678	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13598	117278678	17727838	4566	72811											
DSCAML1	57453	broad.mit.edu	37	chr11	117310621	117310621	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatccaaggtgttgtcacGgtgcccccaaaggagatgat	11	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117310621	T	T	117310621	2	4	61	1	0	0	0	0	0	0	0	1	4809	1103	39	1		1	DSCAML1	11	117310621	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31943	117310621	17695895	4567	72812											
DSCAML1	57453	broad.mit.edu	37	chr11	117376665	117376665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccactgtctctgttcagGgccttgactggcctggatta	11	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117376665	T	T	117376665	1	4	61	0	1	0	0	0	0	0	0	0	4809	1247	43	2		2	DSCAML1	11	117376665	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66044	117376665	17629851	4568	72813											
TMPRSS4	56649	broad.mit.edu	37	chr11	117979715	117979715	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggactccaagtttcattCtgccttggtctacagccctt	8	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117979715	G	G	117979715	1	3	61	0	1	0	0	0	0	0	0	0	16372	928	32	4		4	TMPRSS4	11	117979715	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	603050	117979715	17026801	4569	72814											
SCN2B	6327	broad.mit.edu	37	chr11	118042474	118042474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctccccctccccaccctGcagcggggccctgcagaagg	13	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118042474	T	T	118042474	1	4	61	0	1	0	0	0	0	0	0	0	14030	1334	46	3		3	SCN2B	11	118042474	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62759	118042474	16964042	4570	72815											
AMICA1	120425	broad.mit.edu	37	chr11	118076486	118076486	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaggtccagttctgataAgcaccaaagcccaggctctt	10	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118076486	C	C	118076486	1	2	61	0	1	0	0	0	0	0	0	0	574	87	3	5		5	AMICA1	11	118076486	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	34012	118076486	16930030	4571	72816											
UBE4A	9354	broad.mit.edu	37	chr11	118239210	118239210	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttaacttccctgacttgaGatgttcactaattagatgat	6	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118239210	A	A	118239210	1	1	61	0	1	0	0	0	0	0	0	0	17008	957	33	4		4	UBE4A	11	118239210	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	162724	118239210	16767306	4572	72817											
IFT46	56912	broad.mit.edu	37	chr11	118428453	118428453	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgacattataacctacCtttctgtgcttctggctctc	5	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118428453	G	G	118428453	1	3	61	0	1	0	0	0	0	0	0	0	7630	695	24	4		4	IFT46	11	118428453	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	189243	118428453	16578063	4573	72818											
CXCR5	643	broad.mit.edu	37	chr11	118764713	118764713	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctacctggccattgtccacGccgtccatgcctaccgccac	8	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118764713	A	A	118764713	3	1	61	1	0	0	0	0	1	0	0	0	4127	1087	38	4	466	4	CXCR5	11	118764713	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	336260	118764713	16241803	4574	72819											
HINFP	25988	broad.mit.edu	37	chr11	119002426	119002426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagagctgggacagaaagGgataggggtcctacaggggc	18	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119002426	A	A	119002426	1	1	61	0	1	0	0	0	0	0	0	0	7177	1247	43	4		4	HINFP	11	119002426	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	237713	119002426	16004090	4575	72820											
HINFP	25988	broad.mit.edu	37	chr11	119003699	119003699	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctatcaagtcccattaccGcaaagtacatgaagtgagtg	8	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119003699	A	A	119003699	3	1	61	1	0	0	0	0	1	0	0	0	7177	1087	38	4	1027	4	HINFP	11	119003699	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1273	119003699	16002817	4576	72821											
TRIM29	23650	broad.mit.edu	37	chr11	119983252	119983252	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctagctagacccaccctAccctaacctgcctcaggagg	8	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119983252	C	C	119983252	1	2	61	0	1	0	0	0	0	0	0	0	16627	406	14	5		5	TRIM29	11	119983252	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	979553	119983252	15023264	4577	72822											
TRIM29	23650	broad.mit.edu	37	chr11	119986053	119986053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacttcccttaccagcataGtctgcttgccagatttccaa	6	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119986053	T	T	119986053	3	4	61	1	0	0	0	0	1	0	0	0	16627	1029	36	3	77	3	TRIM29	11	119986053	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2801	119986053	15020463	4578	72823											
POU2F3	25833	broad.mit.edu	37	chr11	120131852	120131852	+	Intron	DEL	T	-	-													ctttggggttggagacatggTttttttttttgttgttttgt					rs11306771		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120131852	-	-	120131852	6	5	61	0	1	1	0	1	0	0	0	0	12369	1740	60	0		0	POU2F3	11	120131852	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	145799	120131852	14874664	4579	72824											
POU2F3	25833	broad.mit.edu	37	chr11	120188339	120188339	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccttactttgagggtggaAatttccaaacactcatgtca	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120188339	T	T	120188339	1	4	61	0	1	0	0	0	0	0	0	0	12369	29	1	5		5	POU2F3	11	120188339	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	56487	120188339	14818177	4580	72825											
TMEM136	219902	broad.mit.edu	37	chr11	120198204	120198204	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtgtggctggctctcGctctatatttctttctgcca	9	12	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120198204	T	T	120198204	2	4	61	1	0	0	0	0	0	0	0	1	16175	1074	38	3		3	TMEM136	11	120198204	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9865	120198204	14808312	4581	72826											
ARHGEF12	23365	broad.mit.edu	37	chr11	120298878	120298878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcagtcattggacatatGtctcccatcatgacatctcc	6	14	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120298878	T	T	120298878	3	4	61	1	0	0	0	0	1	0	0	0	899	1377	48	3	537	3	ARHGEF12	11	120298878	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	100674	120298878	14707638	4582	72827											
GRIK4	2900	broad.mit.edu	37	chr11	120461157	120461157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggtggcctgggtctgcaGccctagatgagtcctatcga	13	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120461157	A	A	120461157	1	1	61	0	1	0	0	0	0	0	0	0	6842	986	34	4		4	GRIK4	11	120461157	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	162279	120461157	14545359	4583	72828											
GRIK4	2900	broad.mit.edu	37	chr11	120591451	120591451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaggtagatttaagagttTagctatattttaagaagtta	11	1	0	3	rs118046113	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120591451	A	A	120591451	1	1	61	0	1	0	0	0	0	0	0	0	6842	1769	61	5		5	GRIK4	11	120591451	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	130294	120591451	14415065	4584	72829											
GRIK4	2900	broad.mit.edu	37	chr11	120648759	120648759	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttgccgctcaggtgacaAggaccggagaccagtactaa	12	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120648759	G	G	120648759	1	3	61	0	1	0	0	0	0	0	0	0	6842	87	3	5		5	GRIK4	11	120648759	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	57308	120648759	14357757	4585	72830											
GRIK4	2900	broad.mit.edu	37	chr11	120685645	120685645	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcgccctccttcataccccCgcctgcctgcctgccttcct	5	23	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120685645	G	G	120685645	1	3	61	0	1	0	0	0	0	0	0	0	6842	667	23	4		4	GRIK4	11	120685645	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36886	120685645	14320871	4586	72831											
GRIK4	2900	broad.mit.edu	37	chr11	120690225	120690225	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccacggtgcattcatccGggtctctggacaaatagttt	10	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120690225	A	A	120690225	1	1	61	0	1	0	0	0	0	0	0	0	6842	1131	39	4		4	GRIK4	11	120690225	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4580	120690225	14316291	4587	72832											
GRIK4	2900	broad.mit.edu	37	chr11	120827420	120827420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaggtgagaccagccaGgagagcctgcctgtgtccct	13	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120827420	T	T	120827420	1	4	61	0	1	0	0	0	0	0	0	0	6842	1015	35	2		2	GRIK4	11	120827420	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	137195	120827420	14179096	4588	72833											
GRIK4	2900	broad.mit.edu	37	chr11	120831681	120831681	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagccttcctgaccgtGcagcgcatggatgtgcccat	12	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120831681	T	T	120831681	2	4	61	1	0	0	0	0	0	0	0	1	6842	1306	46	3		3	GRIK4	11	120831681	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4261	120831681	14174835	4589	72834											
TECTA	7007	broad.mit.edu	37	chr11	121000422	121000422	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatcgaaacaaaaacagtAcgacagtggagtccaagggc	10	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121000422	G	G	121000422	3	3	61	1	0	0	0	0	1	0	0	0	15869	391	14	5	2477	5	TECTA	11	121000422	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	168741	121000422	14006094	4590	72835											
TECTA	7007	broad.mit.edu	37	chr11	121035956	121035956	+	Intron	SNP	A	T	T													gtgtgaaaatgaagttgtgcAtgtttctgtgtgtttttctt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121035956	T	T	121035956	1	4	61	0	1	0	0	0	0	0	0	0	15869	232	8	5		5	TECTA	11	121035956	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	35534	121035956	13970560	4591	72836	331	2									
TECTA	7007	broad.mit.edu	37	chr11	121035958	121035958	+	Intron	SNP	G	T	T													gtgaaaatgaagttgtgcatGtttctgtgtgtttttctttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121035958	T	T	121035958	1	4	61	0	1	0	0	0	0	0	0	0	15869	1392	48	3		3	TECTA	11	121035958	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2	121035958	13970558	4592	72837	331	2									
SORL1	6653	broad.mit.edu	37	chr11	121341048	121341048	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagatccatgcaatgtgtgAttacctttgggaagtaatag	10	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121341048	T	T	121341048	1	4	61	0	1	0	0	0	0	0	0	0	15048	348	12	5		5	SORL1	11	121341048	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	305090	121341048	13665468	4593	72838											
SORL1	6653	broad.mit.edu	37	chr11	121348762	121348762	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaaagatctttctgccagttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121348762	-	-	121348762	6	5	61	0	1	1	0	1	0	0	0	0	15048	957	33	0		0	SORL1	11	121348762	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	7714	121348762	13657754	4594	72839											
SORL1	6653	broad.mit.edu	37	chr11	121351887	121351888	+	Intron	DNP	GG	TT	TT													gtagtgcacagatacctataGgcaggctccatctcctcctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	121351888	TT	TT	121351887	1	4	61	0	1	0	0	0	0	0	0	0	15048	1015	35	2		2	SORL1	11	121351887	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	3125	121351887	13654629	4595	72840											
SORL1	6653	broad.mit.edu	37	chr11	121427961	121427961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgagtagccatctttgGcaatgggggtctttaaggag	14	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121427961	T	T	121427961	1	4	61	0	1	0	0	0	0	0	0	0	15048	1218	42	3		3	SORL1	11	121427961	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	76074	121427961	13578555	4596	72841											
SORL1	6653	broad.mit.edu	37	chr11	121459798	121459798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatggattaattaacaaaGtgtgtgctctgtttagatta	10	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121459798	T	T	121459798	1	4	61	0	1	0	0	0	0	0	0	0	15048	1044	36	3		3	SORL1	11	121459798	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31837	121459798	13546718	4597	72842											
SORL1	6653	broad.mit.edu	37	chr11	121460164	121460164	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtgatgcctgcagttacAgggacactcaccggcaaccc	10	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121460164	T	T	121460164	1	4	61	0	1	0	0	0	0	0	0	0	15048	203	7	5		5	SORL1	11	121460164	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	366	121460164	13546352	4598	72843											
SORL1	6653	broad.mit.edu	37	chr11	121491932	121491932	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgagcaaagattccagcAtaaaaattaccacaggtaag	7	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121491932	G	G	121491932	3	3	61	1	0	0	0	0	1	0	0	0	15048	217	8	5	6223	5	SORL1	11	121491932	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	31768	121491932	13514584	4599	72844											
CRTAM	56253	broad.mit.edu	37	chr11	122720757	122720757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccccggcctgatcatcccCatttctcttcctccacagag	5	19	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122720757	T	T	122720757	1	4	61	0	1	0	0	0	0	0	0	0	3929	609	21	4		4	CRTAM	11	122720757	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1228825	122720757	12285759	4600	72845											
GRAMD1B	57476	broad.mit.edu	37	chr11	123464956	123464956	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgcttctctctagagGcctcaagccaacccaggtaa	10	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123464956	C	C	123464956	1	2	61	0	1	0	0	0	0	0	0	0	6814	1218	42	4		4	GRAMD1B	11	123464956	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	744199	123464956	11541560	4601	72846											
GRAMD1B	57476	broad.mit.edu	37	chr11	123475956	123475956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatatggatggatagaaagGtctgagattcttagaatagt	12	2	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123475956	T	T	123475956	1	4	61	0	1	0	0	0	0	0	0	0	6814	1276	44	3		3	GRAMD1B	11	123475956	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11000	123475956	11530560	4602	72847											
GRAMD1B	57476	broad.mit.edu	37	chr11	123477487	123477487	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccactgagctcagtgactcTtccgacacacacgatgaagg	9	14	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123477487	G	G	123477487	2	3	61	1	0	0	0	0	0	0	0	1	6814	1596	56	5		5	GRAMD1B	11	123477487	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1531	123477487	11529029	4603	72848											
GRAMD1B	57476	broad.mit.edu	37	chr11	123485468	123485468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggttccacacagacgcGgcatatcccggaggacaccc	10	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123485468	T	T	123485468	3	4	61	1	0	0	0	0	1	0	0	0	6814	1116	39	1	1876	1	GRAMD1B	11	123485468	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7981	123485468	11521048	4604	72849											
GRAMD1B	57476	broad.mit.edu	37	chr11	123489193	123489193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgccttcatcccatgcccCtctccatggctctcccctgt	6	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123489193	T	T	123489193	1	4	61	0	1	0	0	0	0	0	0	0	6814	696	24	4		4	GRAMD1B	11	123489193	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3725	123489193	11517323	4605	72850											
OR4D5	219875	broad.mit.edu	37	chr11	123810906	123810906	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcacagatacctttgtcTtagagcttttaatggtgtct	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123810906	C	C	123810906	2	2	61	1	0	0	0	0	0	0	0	1	11151	1606	56	5		5	OR4D5	11	123810906	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	321713	123810906	11195610	4606	72851											
OR10S1	219873	broad.mit.edu	37	chr11	123848537	123848537	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagttcatcttacagttttgTtctgctctagtctagtgctt	7	8	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123848537	G	G	123848537	1	3	61	0	1	0	0	0	0	0	0	0	11012	1740	60	5		5	OR10S1	11	123848537	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	37631	123848537	11157979	4607	72852											
OR10G7	390265	broad.mit.edu	37	chr11	123909484	123909484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcagcattttgggcacCgtgacagtggagaaccacat	11	10	2	2	rs138227924		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123909484	A	A	123909484	2	1	61	1	0	0	0	0	0	0	0	1	10996	639	23	1		1	OR10G7	11	123909484	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60947	123909484	11097032	4608	72853											
VWA5A	4013	broad.mit.edu	37	chr11	124007022	124007022	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagttcccattcttatttgTtcctctagtcaaagagctac	6	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124007022	G	G	124007022	1	3	61	0	1	0	0	0	0	0	0	0	17369	1740	60	5		5	VWA5A	11	124007022	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	97538	124007022	10999494	4609	72854											
ESAM	90952	broad.mit.edu	37	chr11	124624379	124624379	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggctgttgagcaggaaAtgaccagtcactgaccaacc	13	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124624379	G	G	124624379	1	3	61	0	1	0	0	0	0	0	0	0	5289	116	4	5		5	ESAM	11	124624379	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	617357	124624379	10382137	4610	72855											
ROBO3	64221	broad.mit.edu	37	chr11	124740532	124740532	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccacagcctttggattgGgcatgtgagtgccgaagatg	14	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124740532	A	A	124740532	3	1	61	1	0	0	0	0	1	0	0	0	13626	1232	43	4	963	4	ROBO3	11	124740532	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	116153	124740532	10265984	4611	72856											
ROBO3	64221	broad.mit.edu	37	chr11	124744193	124744193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcataaagcaaccctctcCcccaaaaccatgacaccacg	3	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124744193	A	A	124744193	1	1	61	0	1	0	0	0	0	0	0	0	13626	638	22	2		2	ROBO3	11	124744193	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3661	124744193	10262323	4612	72857											
ROBO4	54538	broad.mit.edu	37	chr11	124767670	124767670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacccctgccccccaggaGgctgtctcctccagagccca	10	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124767670	T	T	124767670	3	4	61	1	0	0	0	0	1	0	0	0	13627	1000	35	2	3073	2	ROBO4	11	124767670	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23477	124767670	10238846	4613	72858											
PKNOX2	63876	broad.mit.edu	37	chr11	125216747	125216747	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggaaggaggggaggaggtCaggggccagaagacaggcag	22	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125216747	A	A	125216747	1	1	61	0	1	0	0	0	0	0	0	0	12078	841	29	3		3	PKNOX2	11	125216747	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	449077	125216747	9789769	4614	72859											
PKNOX2	63876	broad.mit.edu	37	chr11	125299719	125299719	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcacccagggccctcctcCttgctgggcttttacatccg	9	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125299719	T	T	125299719	1	4	61	0	1	0	0	0	0	0	0	0	12078	696	24	4		4	PKNOX2	11	125299719	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	82972	125299719	9706797	4615	72860											
PKNOX2	63876	broad.mit.edu	37	chr11	125302146	125302147	+	3'UTR	INS	-	T	T													ctttaacaacaggacaatggINSttttttaccctagatgttcc					rs142631527	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125302147	T	T	125302146	6	5	61	0	1	1	1	0	0	0	0	0	12078	1276	44	0		0	PKNOX2	11	125302146	3'UTR	INS	-	TCGA-17-Z031-01A-01W-0746-08	2427	125302146	9704370	4616	72861											
PATE2	399967	broad.mit.edu	37	chr11	125648606	125648606	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccagcttcccctctgtctCcaggacttaccccaatatgg	6	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125648606	A	A	125648606	1	1	61	0	1	0	0	0	0	0	0	0	11568	870	30	3		3	PATE2	11	125648606	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	346460	125648606	9357910	4617	72862											
DDX25	29118	broad.mit.edu	37	chr11	125780320	125780320	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccgtgtggttgagcagaTgggaaaattctgtgtggatg	17	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125780320	A	A	125780320	3	1	61	1	0	0	0	0	1	0	0	0	4385	1464	51	5	595	5	DDX25	11	125780320	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	131714	125780320	9226196	4618	72863											
CDON	50937	broad.mit.edu	37	chr11	125871775	125871775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataaacatatacagtaaCataagcatatatgtatgtaa	4	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125871775	A	A	125871775	1	1	61	0	1	0	0	0	0	0	0	0	3200	493	17	3		3	CDON	11	125871775	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	91455	125871775	9134741	4619	72864											
FOXRED1	55572	broad.mit.edu	37	chr11	126143046	126143046	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtggggagcagcccagcTagcaaggtagccagagagca	16	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126143046	C	C	126143046	1	2	61	0	1	0	0	0	0	0	0	0	6093	1537	53	5		5	FOXRED1	11	126143046	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	271271	126143046	8863470	4620	72865											
KIRREL3	84623	broad.mit.edu	37	chr11	126367227	126367227	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtaagacagagagagagaGactcccttttccccaaaatg	10	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126367227	T	T	126367227	1	4	61	0	1	0	0	0	0	0	0	0	8397	957	33	3		3	KIRREL3	11	126367227	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	224181	126367227	8639289	4621	72866											
ETS1	2113	broad.mit.edu	37	chr11	128355042	128355042	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttttcaccatctacagggCcctatgatgtgggacaagct	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128355042	T	T	128355042	1	4	61	0	1	0	0	0	0	0	0	0	5317	754	26	4		4	ETS1	11	128355042	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1987815	128355042	6651474	4622	72867											
ETS1	2113	broad.mit.edu	37	chr11	128460126	128460127	+	5'Flank	DEL	AC	-	-													atgaaattccaatacatgctAcagtatgatgaaccttgagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128460127	-	-	128460126	6	5	61	0	1	1	0	1	0	0	0	0	5317	406	14	0		0	ETS1	11	128460126	5'Flank	DEL	AC	TCGA-17-Z031-01A-01W-0746-08	105084	128460126	6546390	4623	72868											
KCNJ5	3762	broad.mit.edu	37	chr11	128773475	128773475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctagttagtggtcttGtttctactgcgggggccgtt	15	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128773475	T	T	128773475	1	4	61	0	1	0	0	0	0	0	0	0	8124	1392	48	3		3	KCNJ5	11	128773475	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	313349	128773475	6233041	4624	72869											
TP53AIP1	63970	broad.mit.edu	37	chr11	128807720	128807720	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggaagatcccatccagggGaggccctgtctgcagaaagc	14	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128807720	T	T	128807720	1	4	61	0	1	0	0	0	0	0	0	0	16506	1189	41	3		3	TP53AIP1	11	128807720	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34245	128807720	6198796	4625	72870											
ARHGAP32	9743	broad.mit.edu	37	chr11	128932360	128932360	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtaaagtactattcatGctctggccagtaatttccaa	7	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128932360	A	A	128932360	1	1	61	0	1	0	0	0	0	0	0	0	883	1334	46	4		4	ARHGAP32	11	128932360	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	124640	128932360	6074156	4626	72871											
ARHGAP32	9743	broad.mit.edu	37	chr11	128947484	128947484	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcataatcccccttagatcAtaactccaatggcctgagaa	6	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128947484	G	G	128947484	1	3	61	0	1	0	0	0	0	0	0	0	883	232	8	5		5	ARHGAP32	11	128947484	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	15124	128947484	6059032	4627	72872											
ARHGAP32	9743	broad.mit.edu	37	chr11	128994765	128994766	+	Missense_Mutation	DNP	TC	AA	AA													aagagtaagatctccaggaaTctctggaacatctgcgcctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	128994766	AA	AA	128994765	3	1	61	1	0	0	0	0	1	0	0	0	883	1435	50	5	6093	5	ARHGAP32	11	128994765	Missense_Mutation	DNP	TC	TCGA-17-Z031-01A-01W-0746-08	47281	128994765	6011751	4628	72873											
APLP2	334	broad.mit.edu	37	chr11	129996650	129996650	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatttcgagacctctgcAgatgataatgagcatgctcg	11	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129996650	T	T	129996650	2	4	61	1	0	0	0	0	0	0	0	1	781	175	7	5		5	APLP2	11	129996650	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1001885	129996650	5009866	4629	72874											
ADAMTS15	170689	broad.mit.edu	37	chr11	130319699	130319699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttagagatcgtgactcCgggcccaaggtcaccggcaa	11	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130319699	A	A	130319699	2	1	61	1	0	0	0	0	0	0	0	1	260	639	23	1		1	ADAMTS15	11	130319699	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	323049	130319699	4686817	4630	72875											
ADAMTS15	170689	broad.mit.edu	37	chr11	130341207	130341208	+	Missense_Mutation	DNP	CG	TT	TT													ctgggctccaagaagagattCgacaagtgtggggtgtgtgg					rs139750111	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	130341208	TT	TT	130341207	3	4	61	1	0	0	0	0	1	0	0	0	260	883	31	4	2033	4	ADAMTS15	11	130341207	Missense_Mutation	DNP	CG	TCGA-17-Z031-01A-01W-0746-08	21508	130341207	4665309	4631	72876											
SNX19	399979	broad.mit.edu	37	chr11	130750307	130750307	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcagctgtagagttcctttCcattcccttggcatcagctg	9	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130750307	A	A	130750307	1	1	61	0	1	0	0	0	0	0	0	0	15004	870	30	3		3	SNX19	11	130750307	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	409100	130750307	4256209	4632	72877											
SNX19	399979	broad.mit.edu	37	chr11	130773244	130773244	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttagtagcaagaggagcaGatccagggctgtgtcagcta	14	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130773244	C	C	130773244	3	2	61	1	0	0	0	0	1	0	0	0	15004	933	33	4	515	4	SNX19	11	130773244	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22937	130773244	4233272	4633	72878											
NTM	50863	broad.mit.edu	37	chr11	131315470	131315470	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtcagagatggcttgtGgtaatcagtcccagagtgtg	15	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131315470	C	C	131315470	1	2	61	0	1	0	0	0	0	0	0	0	10794	1363	47	4		4	NTM	11	131315470	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	542226	131315470	3691046	4634	72879											
NTM	50863	broad.mit.edu	37	chr11	131409381	131409381	+	Intron	DEL	G	-	-													aattggggcccatcatgtttGgggcactcttgtaggcctgt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131409381	-	-	131409381	6	5	61	0	1	1	0	1	0	0	0	0	10794	1363	47	0		0	NTM	11	131409381	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	93911	131409381	3597135	4635	72880											
NTM	50863	broad.mit.edu	37	chr11	131550479	131550479	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggcatgtgtgcctctgtGtctgtgtgtgagatcatgcc	14	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131550479	A	A	131550479	1	1	61	0	1	0	0	0	0	0	0	0	10794	1392	48	4		4	NTM	11	131550479	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	141098	131550479	3456037	4636	72881											
NTM	50863	broad.mit.edu	37	chr11	131550498	131550498	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgtgtgtgagatcatgCctgtgtctgtgtctgtgagt	14	6	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131550498	G	G	131550498	1	3	61	0	1	0	0	0	0	0	0	0	10794	754	26	4		4	NTM	11	131550498	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19	131550498	3456018	4637	72882											
NTM	50863	broad.mit.edu	37	chr11	131682211	131682211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaatatatgagggtacgGggaattgaggtatcctttca	12	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131682211	A	A	131682211	1	1	61	0	1	0	0	0	0	0	0	0	10794	1247	43	4		4	NTM	11	131682211	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	131713	131682211	3324305	4638	72883											
NTM	50863	broad.mit.edu	37	chr11	131692936	131692936	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttatctttaatgatgacaGgcaggagacaaatgcacttg	9	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131692936	A	A	131692936	1	1	61	0	1	0	0	0	0	0	0	0	10794	1015	35	4		4	NTM	11	131692936	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10725	131692936	3313580	4639	72884											
NTM	50863	broad.mit.edu	37	chr11	131701325	131701325	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagatgatatacccatgtccTcatggctggaaaatggcaga	10	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131701325	A	A	131701325	1	1	61	0	1	0	0	0	0	0	0	0	10794	1566	54	5		5	NTM	11	131701325	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	8389	131701325	3305191	4640	72885											
NTM	50863	broad.mit.edu	37	chr11	131720753	131720753	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacccataggatttcttgagGagaagaagaggcagcaggtt	14	6	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131720753	T	T	131720753	1	4	61	0	1	0	0	0	0	0	0	0	10794	1189	41	3		3	NTM	11	131720753	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19428	131720753	3285763	4641	72886											
NTM	50863	broad.mit.edu	37	chr11	131722415	131722415	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaactttgagagaagaggTaggctagcaggtggaatgtc	15	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131722415	C	C	131722415	1	2	61	0	1	0	0	0	0	0	0	0	10794	1653	57	5		5	NTM	11	131722415	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1662	131722415	3284101	4642	72887											
NTM	50863	broad.mit.edu	37	chr11	131724908	131724908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaagatgcggatgtgtgGgaccggtgctgatgggaaca	17	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131724908	T	T	131724908	1	4	61	0	1	0	0	0	0	0	0	0	10794	1247	43	2		2	NTM	11	131724908	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2493	131724908	3281608	4643	72888											
NTM	50863	broad.mit.edu	37	chr11	131737912	131737912	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagtcttgcttcttcacTacgaagccagtattgttttg	9	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131737912	A	A	131737912	1	1	61	0	1	0	0	0	0	0	0	0	10794	1537	53	5		5	NTM	11	131737912	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	13004	131737912	3268604	4644	72889											
NTM	50863	broad.mit.edu	37	chr11	131808708	131808708	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacgtgatgctggaatttgTgatgagagagtggaaaaaat	15	2	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131808708	C	C	131808708	1	2	61	0	1	0	0	0	0	0	0	0	10794	1711	59	5		5	NTM	11	131808708	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	70796	131808708	3197808	4645	72890											
NTM	50863	broad.mit.edu	37	chr11	131852369	131852369	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagggtcatggaacagacAcagctgctcctgaaagttca	12	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131852369	G	G	131852369	1	3	61	0	1	0	0	0	0	0	0	0	10794	174	6	5		5	NTM	11	131852369	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	43661	131852369	3154147	4646	72891											
NTM	50863	broad.mit.edu	37	chr11	131864956	131864956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgagccagactgcctgCcttagatccccctgtcctct	8	15	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131864956	A	A	131864956	1	1	61	0	1	0	0	0	0	0	0	0	10794	754	26	3		3	NTM	11	131864956	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12587	131864956	3141560	4647	72892											
NTM	50863	broad.mit.edu	37	chr11	132001231	132001231	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgcagtgtgccttcacttCaagcaactgatatttactga	8	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132001231	A	A	132001231	1	1	61	0	1	0	0	0	0	0	0	0	10794	841	29	3		3	NTM	11	132001231	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	136275	132001231	3005285	4648	72893											
NTM	50863	broad.mit.edu	37	chr11	132016219	132016219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggtggcctggctaaacCgcagcaccatcctctatgct	10	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132016219	A	A	132016219	3	1	61	1	0	0	0	0	1	0	0	0	10794	652	23	1	303	1	NTM	11	132016219	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14988	132016219	2990297	4649	72894											
NTM	50863	broad.mit.edu	37	chr11	132027857	132027857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctcttctgccctctccCaagctgctgttacctttgtc	6	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132027857	A	A	132027857	1	1	61	0	1	0	0	0	0	0	0	0	10794	609	21	2		2	NTM	11	132027857	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11638	132027857	2978659	4650	72895											
NTM	50863	broad.mit.edu	37	chr11	132032552	132032552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatgtgtgtgtttgtggGgcttgtgtgagtgtgtgtgt	20	2	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132032552	T	T	132032552	1	4	61	0	1	0	0	0	0	0	0	0	10794	1247	43	2		2	NTM	11	132032552	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4695	132032552	2973964	4651	72896											
NTM	50863	broad.mit.edu	37	chr11	132084355	132084355	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcccccacttctcctgcAtgcgtctcctttttgtcctg	5	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132084355	G	G	132084355	1	3	61	0	1	0	0	0	0	0	0	0	10794	232	8	5		5	NTM	11	132084355	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	51803	132084355	2922161	4652	72897											
NTM	50863	broad.mit.edu	37	chr11	132098040	132098040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggagtggaagtgcaggGgcaacccaacgccacagaaa	15	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132098040	T	T	132098040	1	4	61	0	1	0	0	0	0	0	0	0	10794	1247	43	2		2	NTM	11	132098040	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13685	132098040	2908476	4653	72898											
NTM	50863	broad.mit.edu	37	chr11	132102250	132102250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctgacaactgatctccCgcattcatgaaaggaactgg	10	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132102250	T	T	132102250	1	4	61	0	1	0	0	0	0	0	0	0	10794	667	23	4		4	NTM	11	132102250	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4210	132102250	2904266	4654	72899											
NTM	50863	broad.mit.edu	37	chr11	132163485	132163485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagatgactggagatttaCgcgtctacaggagaggtcag	13	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132163485	A	A	132163485	1	1	61	0	1	0	0	0	0	0	0	0	10794	551	19	3		3	NTM	11	132163485	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61235	132163485	2843031	4655	72900											
OPCML	4978	broad.mit.edu	37	chr11	132302966	132302966	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaagtgtgtgccaacagGgtgaagtgagatagggtggg	18	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132302966	A	A	132302966	1	1	61	0	1	0	0	0	0	0	0	0	10968	1247	43	4		4	OPCML	11	132302966	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	139481	132302966	2703550	4656	72901											
OPCML	4978	broad.mit.edu	37	chr11	132305854	132305854	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagggagaagtatgtcttaTctacaggtggtgggttgagt	16	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132305854	A	A	132305854	1	1	61	0	1	0	0	0	0	0	0	0	10968	1450	50	5		5	OPCML	11	132305854	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2888	132305854	2700662	4657	72902											
OPCML	4978	broad.mit.edu	37	chr11	132305933	132305933	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctcctgagtccctcaagCttccccatgtggctgagccc	8	18	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132305933	T	T	132305933	1	4	61	0	1	0	0	0	0	0	0	0	10968	812	28	4		4	OPCML	11	132305933	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79	132305933	2700583	4658	72903											
OPCML	4978	broad.mit.edu	37	chr11	132410897	132410897	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagttcttctggccacacacAcacttaggatcacagggttt	9	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132410897	G	G	132410897	1	3	61	0	1	0	0	0	0	0	0	0	10968	174	6	5		5	OPCML	11	132410897	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	104964	132410897	2595619	4659	72904											
OPCML	4978	broad.mit.edu	37	chr11	132470018	132470018	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcttggtccatgtgctcctAcagcaaactctaggcatctt	8	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132470018	T	T	132470018	1	4	61	0	1	0	0	0	0	0	0	0	10968	406	14	5		5	OPCML	11	132470018	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	59121	132470018	2536498	4660	72905											
OPCML	4978	broad.mit.edu	37	chr11	132691644	132691644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtatcttcccccctctttcCatcttccagccttcttcctt	3	18	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132691644	T	T	132691644	1	4	61	0	1	0	0	0	0	0	0	0	10968	609	21	4		4	OPCML	11	132691644	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	221626	132691644	2314872	4661	72906											
OPCML	4978	broad.mit.edu	37	chr11	132693339	132693339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaccttttcctgcaccctAgattccaaccctcttgcctg	5	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132693339	G	G	132693339	1	3	61	0	1	0	0	0	0	0	0	0	10968	435	15	5		5	OPCML	11	132693339	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1695	132693339	2313177	4662	72907											
OPCML	4978	broad.mit.edu	37	chr11	132812753	132812753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatggagccttctgcccCctcttccctcctctccccag	5	23	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132812753	A	A	132812753	1	1	61	0	1	0	0	0	0	0	0	0	10968	638	22	2		2	OPCML	11	132812753	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	119414	132812753	2193763	4663	72908											
OPCML	4978	broad.mit.edu	37	chr11	132830484	132830484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttccaccatctccctcCccctctccatctgtctgtct	2	19	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132830484	A	A	132830484	1	1	61	0	1	0	0	0	0	0	0	0	10968	638	22	2		2	OPCML	11	132830484	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17731	132830484	2176032	4664	72909											
OPCML	4978	broad.mit.edu	37	chr11	133052830	133052830	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcatctggctaatctgtaGttctaacctgaaaaccacca	5	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133052830	C	C	133052830	1	2	61	0	1	0	0	0	0	0	0	0	10968	1044	36	4		4	OPCML	11	133052830	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	222346	133052830	1953686	4665	72910											
OPCML	4978	broad.mit.edu	37	chr11	133160013	133160013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcatgcttctgaatgGggccctacatgcaaggaaca	12	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133160013	T	T	133160013	1	4	61	0	1	0	0	0	0	0	0	0	10968	1247	43	2		2	OPCML	11	133160013	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	107183	133160013	1846503	4666	72911											
IQSEC3	440073	broad.mit.edu	37	chr12	208282	208282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacccagcctgcctcaggCgctctgatctccctctgctc	10	18	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208282	A	A	208282	1	1	61	0	1	0	0	0	0	0	0	0	7889	783	27	3		3	IQSEC3	12	208282	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08		208282	133643613	4667	72912											
SLC6A12	6539	broad.mit.edu	37	chr12	304297	304297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacacagaaaccaggggaCcagagaacggcctcccccag	11	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	304297	A	A	304297	1	1	61	0	1	0	0	0	0	0	0	0	14789	522	18	3		3	SLC6A12	12	304297	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	96015	304297	133547598	4668	72913											
SLC6A13	6540	broad.mit.edu	37	chr12	333264	333264	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgagggtacatgtccaccAgcgctgtcaccaggctttct	11	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	333264	T	T	333264	3	4	61	1	0	0	0	0	1	0	0	0	14790	188	7	5	623	5	SLC6A13	12	333264	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	28967	333264	133518631	4669	72914											
KDM5A	5927	broad.mit.edu	37	chr12	404814	404814	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccatatgtgttgagtctcGtccagagatacttccaggag	11	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	404814	A	A	404814	2	1	61	1	0	0	0	0	0	0	0	1	8203	1136	40	4		4	KDM5A	12	404814	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71550	404814	133447081	4670	72915											
KDM5A	5927	broad.mit.edu	37	chr12	443549	443558	+	Frame_Shift_Del	DEL	CAGGCATGTT	-	-													aagaacagactgttccaggaCaggcatgttattcaaattcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	443558	-	-	443549	7	5	61	1	0	1	0	1	0	0	0	0	8203	478	17	0	3796	0	KDM5A	12	443549	Frame_Shift_Del	DEL	CAGGCATGTT	TCGA-17-Z031-01A-01W-0746-08	38735	443549	133408346	4671	72916											
NINJ2	4815	broad.mit.edu	37	chr12	675315	675315	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaatggttcaggttgatGggctggctcctggggtcgga	18	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	675315	T	T	675315	2	4	61	1	0	0	0	0	0	0	0	1	10514	1335	47	2		2	NINJ2	12	675315	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	231766	675315	133176580	4672	72917											
NINJ2	4815	broad.mit.edu	37	chr12	695710	695710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaaggggtgggagctgCttctccctgggcagcgcacg	19	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	695710	A	A	695710	1	1	61	0	1	0	0	0	0	0	0	0	10514	812	28	3		3	NINJ2	12	695710	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20395	695710	133156185	4673	72918											
WNK1	65125	broad.mit.edu	37	chr12	936338	936338	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgatcttaaatgtgacaacAtctttatcaccggccctact	6	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	936338	G	G	936338	3	3	61	1	0	0	0	0	1	0	0	0	17504	217	8	5	1073	5	WNK1	12	936338	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	240628	936338	132915557	4674	72919											
WNK1	65125	broad.mit.edu	37	chr12	990989	990989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattctccttccttgactgGtaaataagacggtatgaaac	8	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	990989	T	T	990989	1	4	61	0	1	0	0	0	0	0	0	0	17504	1276	44	3		3	WNK1	12	990989	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54651	990989	132860906	4675	72920											
ERC1	23085	broad.mit.edu	37	chr12	1137381	1137381	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgccttacggtgttcggatGactgctatgggtagtagccc	13	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1137381	T	T	1137381	3	4	61	1	0	0	0	0	1	0	0	0	5252	1290	45	3	314	3	ERC1	12	1137381	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	146392	1137381	132714514	4676	72921											
WNT5B	81029	broad.mit.edu	37	chr12	1748995	1748995	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccccgggactggctgtgGggcggctgtggggacaacgt	19	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1748995	C	C	1748995	3	2	61	1	0	0	0	0	1	0	0	0	17519	1241	43	4	484	4	WNT5B	12	1748995	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	611614	1748995	132102900	4677	72922											
WNT5B	81029	broad.mit.edu	37	chr12	1755323	1755323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacaaccagttcaagagcGtgcaggtggagcgctgccac	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1755323	T	T	1755323	3	4	61	1	0	0	0	0	1	0	0	0	17519	1145	40	3	999	3	WNT5B	12	1755323	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6328	1755323	132096572	4678	72923											
CACNA2D4	93589	broad.mit.edu	37	chr12	1950072	1950072	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttcttggaataggagatggGaataaaagcaggcgaaggca	14	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1950072	C	C	1950072	1	2	61	0	1	0	0	0	0	0	0	0	2577	1189	41	4		4	CACNA2D4	12	1950072	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	194749	1950072	131901823	4679	72924											
CACNA2D4	93589	broad.mit.edu	37	chr12	1963309	1963309	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagatgtgcttcctgaAcgtgtctatgggacatgtaa	13	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1963309	T	T	1963309	1	4	61	0	1	0	0	0	0	0	0	0	2577	58	2	5		5	CACNA2D4	12	1963309	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	13237	1963309	131888586	4680	72925											
CACNA2D4	93589	broad.mit.edu	37	chr12	1983750	1983750	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttcctaggccatgccctGgctgtttctagctccttacc	8	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1983750	A	A	1983750	1	1	61	0	1	0	0	0	0	0	0	0	2577	1363	47	4		4	CACNA2D4	12	1983750	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20441	1983750	131868145	4681	72926											
DCP1B	196513	broad.mit.edu	37	chr12	2064388	2064388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagagattagcacagaatgTggtatatgccaaaagtaaaa	9	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2064388	C	C	2064388	1	2	61	0	1	0	0	0	0	0	0	0	4332	1711	59	5		5	DCP1B	12	2064388	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	80638	2064388	131787507	4682	72927											
CACNA1C	775	broad.mit.edu	37	chr12	2332197	2332197	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtcacaatctttacatActggaatggacacgcacata	6	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2332197	T	T	2332197	1	4	61	0	1	0	0	0	0	0	0	0	2566	406	14	5		5	CACNA1C	12	2332197	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	267809	2332197	131519698	4683	72928											
CACNA1C	775	broad.mit.edu	37	chr12	2387058	2387058	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcaagcagagcagagggtCctgagcatgcggcattagat	15	8	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2387058	T	T	2387058	1	4	61	0	1	0	0	0	0	0	0	0	2566	870	30	4		4	CACNA1C	12	2387058	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	54861	2387058	131464837	4684	72929											
CACNA1C	775	broad.mit.edu	37	chr12	2482751	2482751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatggggcaggagtttggCgtggattcaggggccgcagc	19	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2482751	A	A	2482751	1	1	61	0	1	0	0	0	0	0	0	0	2566	783	27	3		3	CACNA1C	12	2482751	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	95693	2482751	131369144	4685	72930											
CACNA1C	775	broad.mit.edu	37	chr12	2566635	2566635	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggctggagacgcctgCgcaatctgcttttccgggct	13	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2566635	G	G	2566635	1	3	61	0	1	0	0	0	0	0	0	0	2566	783	27	4		4	CACNA1C	12	2566635	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83884	2566635	131285260	4686	72931											
CACNA1C	775	broad.mit.edu	37	chr12	2656655	2656655	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttgatcagaagaaagggaAgtttgcttggtttagtcact	12	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2656655	G	G	2656655	1	3	61	0	1	0	0	0	0	0	0	0	2566	87	3	5		5	CACNA1C	12	2656655	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	90020	2656655	131195240	4687	72932											
CACNA1C	775	broad.mit.edu	37	chr12	2659199	2659199	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaactgcggggccaggctggCgtgagtaggcacggcgagcc	18	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2659199	G	G	2659199	3	3	61	1	0	0	0	0	1	0	0	0	2566	782	27	4	1627	4	CACNA1C	12	2659199	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2544	2659199	131192696	4688	72933											
CACNA1C	775	broad.mit.edu	37	chr12	2675717	2675717	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accattgcctctgagcactaCaaccagcccaactggctcac	6	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2675717	T	T	2675717	2	4	61	1	0	0	0	0	0	0	0	1	2566	489	17	4		4	CACNA1C	12	2675717	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16518	2675717	131176178	4689	72934											
CACNA1C	775	broad.mit.edu	37	chr12	2711898	2711898	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctaagagctttccaggtGactcccctgtacagccaagc	9	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2711898	T	T	2711898	1	4	61	0	1	0	0	0	0	0	0	0	2566	1305	45	3		3	CACNA1C	12	2711898	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36181	2711898	131139997	4690	72935											
CACNA1C	775	broad.mit.edu	37	chr12	2721178	2721178	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcattgccttcaaacccaAggtaggcctctgagaaagac	9	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2721178	C	C	2721178	3	2	61	1	0	0	0	0	1	0	0	0	2566	86	3	5	4113	5	CACNA1C	12	2721178	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9280	2721178	131130717	4691	72936											
CACNA1C	775	broad.mit.edu	37	chr12	2727481	2727481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctttcccacccaggccaGggtgtcagtctggatggtaa	11	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2727481	T	T	2727481	1	4	61	0	1	0	0	0	0	0	0	0	2566	1015	35	2		2	CACNA1C	12	2727481	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6303	2727481	131124414	4692	72937											
ITFG2	55846	broad.mit.edu	37	chr12	2933173	2933173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcatgctgcaggagctgGgcgtgggtgagtcccagaaa	16	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2933173	T	T	2933173	1	4	61	0	1	0	0	0	0	0	0	0	7940	1247	43	2		2	ITFG2	12	2933173	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	205692	2933173	130918722	4693	72938											
PRMT8	56341	broad.mit.edu	37	chr12	3667375	3667375	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctcatcatcctgctctgTctcacaccatagggctctcc	5	19	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3667375	G	G	3667375	1	3	61	0	1	0	0	0	0	0	0	0	12648	1682	58	5		5	PRMT8	12	3667375	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	734202	3667375	130184520	4694	72939											
PRMT8	56341	broad.mit.edu	37	chr12	3692094	3692094	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggtggggagcctgggaaatCaccccaagaataaagatatc	12	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3692094	G	G	3692094	1	3	61	0	1	0	0	0	0	0	0	0	12648	841	29	4		4	PRMT8	12	3692094	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24719	3692094	130159801	4695	72940											
PARP11	57097	broad.mit.edu	37	chr12	3938052	3938052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaatatactaaaaacacaCaactattagggaaaaaaaca	3	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3938052	T	T	3938052	1	4	61	0	1	0	0	0	0	0	0	0	11550	493	17	4		4	PARP11	12	3938052	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	245958	3938052	129913843	4696	72941											
PARP11	57097	broad.mit.edu	37	chr12	3938965	3938965	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttaagctttgacttcaAgttctatatttatactcatt	3	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3938965	C	C	3938965	1	2	61	0	1	0	0	0	0	0	0	0	11550	87	3	5		5	PARP11	12	3938965	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	913	3938965	129912930	4697	72942											
CCND2	894	broad.mit.edu	37	chr12	4387871	4387871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccccagccccctacacCaggtcagcctgtggaattta	7	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4387871	A	A	4387871	1	1	61	0	1	0	0	0	0	0	0	0	2947	609	21	2		2	CCND2	12	4387871	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	448906	4387871	129464024	4698	72943											
RAD51AP1	10635	broad.mit.edu	37	chr12	4658143	4658143	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagaacagttcaattcagtGatagcatttggggaaaaagt	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4658143	T	T	4658143	1	4	61	0	1	0	0	0	0	0	0	0	13094	1305	45	3		3	RAD51AP1	12	4658143	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	270272	4658143	129193752	4699	72944											
AKAP3	10566	broad.mit.edu	37	chr12	4735925	4735925	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggctggtaagcactcatAtaaactatctgggaaggccg	11	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4735925	C	C	4735925	3	2	61	1	0	0	0	0	1	0	0	0	452	449	16	5	426	5	AKAP3	12	4735925	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	77782	4735925	129115970	4700	72945											
AKAP3	10566	broad.mit.edu	37	chr12	4737038	4737038	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcatgagggtccctgtgaCgctgtggagattcctcaaga	13	9	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4737038	T	T	4737038	3	4	61	1	0	0	0	0	1	0	0	0	452	536	19	4	1539	4	AKAP3	12	4737038	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1113	4737038	129114857	4701	72946											
NDUFA9	4704	broad.mit.edu	37	chr12	4768355	4768355	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaataaggtaagtaacaaAttgatctgggaagtggttca	11	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4768355	C	C	4768355	1	2	61	0	1	0	0	0	0	0	0	0	10367	116	4	5		5	NDUFA9	12	4768355	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	31317	4768355	129083540	4702	72947											
KCNA5	3741	broad.mit.edu	37	chr12	5153858	5153858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctactactaccagtccgGgggccgcctgcggaggccgg	14	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5153858	T	T	5153858	3	4	61	1	0	0	0	0	1	0	0	0	8076	1232	43	2	547	2	KCNA5	12	5153858	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	385503	5153858	128698037	4703	72948											
NTF3	4908	broad.mit.edu	37	chr12	5593450	5593450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggatgccagtttctggCaccctgggcttcacagggac	13	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5593450	A	A	5593450	1	1	61	0	1	0	0	0	0	0	0	0	10791	725	25	3		3	NTF3	12	5593450	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	439592	5593450	128258445	4704	72949											
ANO2	57101	broad.mit.edu	37	chr12	5685159	5685159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaggcgggggataaagtcgGaggtgatcgcaatgacaaaa	15	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5685159	T	T	5685159	3	4	61	1	0	0	0	0	1	0	0	0	697	1174	41	3	546	3	ANO2	12	5685159	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	91709	5685159	128166736	4705	72950											
ANO2	57101	broad.mit.edu	37	chr12	5747267	5747267	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcccaagaggcaacaatgtGattgatccaaggtctggagg	13	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5747267	T	T	5747267	1	4	61	0	1	0	0	0	0	0	0	0	697	1305	45	3		3	ANO2	12	5747267	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62108	5747267	128104628	4706	72951											
ANO2	57101	broad.mit.edu	37	chr12	5801778	5801778	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagaatctaagttcaggtcCtggcggcaattcacagtgcc	10	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5801778	T	T	5801778	1	4	61	0	1	0	0	0	0	0	0	0	697	696	24	4		4	ANO2	12	5801778	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	54511	5801778	128050117	4707	72952											
VWF	7450	broad.mit.edu	37	chr12	6103847	6103847	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttagggaagttaccgagAgttcctgcacattcatcaca	8	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6103847	G	G	6103847	1	3	61	0	1	0	0	0	0	0	0	0	17373	319	11	5		5	VWF	12	6103847	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	302069	6103847	127748048	4708	72953											
VWF	7450	broad.mit.edu	37	chr12	6122739	6122739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccacgttggagtcgcctGctgggcctgccaagatccgt	12	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6122739	T	T	6122739	3	4	61	1	0	0	0	0	1	0	0	0	17373	1319	46	3	2997	3	VWF	12	6122739	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18892	6122739	127729156	4709	72954											
CD4	920	broad.mit.edu	37	chr12	6926530	6926530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaggcctctgcctcctGggctgcgggaccttcctgtg	12	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6926530	T	T	6926530	1	4	61	0	1	0	0	0	0	0	0	0	3044	1363	47	2		2	CD4	12	6926530	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	803791	6926530	126925365	4710	72955											
GPR162	27239	broad.mit.edu	37	chr12	6936304	6936304	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgacggggggtgaagaaAgtgcaagggcttggggagga	20	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6936304	C	C	6936304	3	2	61	1	0	0	0	0	1	0	0	0	6731	72	3	5	1735	5	GPR162	12	6936304	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9774	6936304	126915591	4711	72956											
LEPREL2	10536	broad.mit.edu	37	chr12	6946733	6946733	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgtgccgcagcgccatAgaaggtacgacagggacccc	14	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6946733	G	G	6946733	3	3	61	1	0	0	0	0	1	0	0	0	8803	410	15	5	1748	5	LEPREL2	12	6946733	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10429	6946733	126905162	4712	72957											
USP5	8078	broad.mit.edu	37	chr12	6965537	6965537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaggaggtgcaggcatgGgatggggaagtacggcaggt	20	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6965537	T	T	6965537	3	4	61	1	0	0	0	0	1	0	0	0	17208	1241	43	2	525	2	USP5	12	6965537	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18804	6965537	126886358	4713	72958											
USP5	8078	broad.mit.edu	37	chr12	6967481	6967481	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgagcctgtaattccaCaaattctaggccacagttga	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6967481	G	G	6967481	1	3	61	0	1	0	0	0	0	0	0	0	17208	493	17	4		4	USP5	12	6967481	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1944	6967481	126884414	4714	72959											
LRRC23	10233	broad.mit.edu	37	chr12	7014888	7014888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagacagaggagggggagGactacagaaaagagggggaa	20	3	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7014888	T	T	7014888	3	4	61	1	0	0	0	0	1	0	0	0	9065	1174	41	3	93	3	LRRC23	12	7014888	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47407	7014888	126837007	4715	72960											
ATN1	1822	broad.mit.edu	37	chr12	7050065	7050065	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgcctcggtgcaccctctCattgaccccctggcctcagg	9	18	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7050065	G	G	7050065	2	3	61	1	0	0	0	0	0	0	0	1	1115	813	29	4		4	ATN1	12	7050065	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	35177	7050065	126801830	4716	72961											
PTPN6	5777	broad.mit.edu	37	chr12	7065802	7065802	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaagtcgaagagcagtcaGatgccagggcagaaagggat	14	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7065802	A	A	7065802	1	1	61	0	1	0	0	0	0	0	0	0	12900	957	33	4		4	PTPN6	12	7065802	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15737	7065802	126786093	4717	72962											
CLSTN3	9746	broad.mit.edu	37	chr12	7284340	7284341	+	Intron	INS	-	GCCTCCTA	GCCTCCTA													gcatctctgacctcagcctcINSgcctcctagcctcctgccac					rs139362595	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GCCTCCTA	7284341	GCCTCCTA	GCCTCCTA	7284340	6	5	61	0	1	1	1	0	0	0	0	0	3595	899	31	0		0	CLSTN3	12	7284340	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	218538	7284340	126567555	4718	72963											
CLSTN3	9746	broad.mit.edu	37	chr12	7301414	7301414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaactgctgtgggggttgGgatgcagaggcatgaccccc	15	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7301414	T	T	7301414	1	4	61	0	1	0	0	0	0	0	0	0	3595	1247	43	2		2	CLSTN3	12	7301414	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17074	7301414	126550481	4719	72964											
ACSM4	341392	broad.mit.edu	37	chr12	7476108	7476108	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaagaaggggaaattgcCctcagactcaaacctacacg	10	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7476108	A	A	7476108	2	1	61	1	0	0	0	0	0	0	0	1	186	610	22	2		2	ACSM4	12	7476108	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	174694	7476108	126375787	4720	72965											
CD163L1	283316	broad.mit.edu	37	chr12	7531839	7531839	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctggacattcacctcaacTtttccagcacacctgctgct	5	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7531839	G	G	7531839	3	3	61	1	0	0	0	0	1	0	0	0	2998	1606	56	5	2299	5	CD163L1	12	7531839	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	55731	7531839	126320056	4721	72966											
CD163L1	283316	broad.mit.edu	37	chr12	7551765	7551765	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccttccttctttccttccTtccgccctccctcttttctt	1	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7551765	A	A	7551765	1	1	61	0	1	0	0	0	0	0	0	0	2998	1624	56	5		5	CD163L1	12	7551765	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19926	7551765	126300130	4722	72967											
DPPA3	359787	broad.mit.edu	37	chr12	7869550	7869550	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccaattaatccatttcatCattttttttcagaaggaatc	3	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7869550	G	G	7869550	1	3	61	0	1	0	0	0	0	0	0	0	4775	841	29	4		4	DPPA3	12	7869550	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	317785	7869550	125982345	4723	72968											
SLC2A3	6515	broad.mit.edu	37	chr12	8073983	8073983	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtggctttcccatgccGggagggaggtggaaggaggc	20	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8073983	A	A	8073983	1	1	61	0	1	0	0	0	0	0	0	0	14659	1131	39	4		4	SLC2A3	12	8073983	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	204433	8073983	125777912	4724	72969											
FOXJ2	55810	broad.mit.edu	37	chr12	8196499	8196499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaccatgggtcttgggaGgatattgcgcctctgcttat	13	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8196499	T	T	8196499	1	4	61	0	1	0	0	0	0	0	0	0	6072	1015	35	2		2	FOXJ2	12	8196499	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	122516	8196499	125655396	4725	72970											
FAM90A1	55138	broad.mit.edu	37	chr12	8374535	8374535	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctctgagacatgagggctCtgagcgaggaaggctcccgg	15	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8374535	G	G	8374535	3	3	61	1	0	0	0	0	1	0	0	0	5703	912	32	4	120	4	FAM90A1	12	8374535	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	178036	8374535	125477360	4726	72971											
CLEC6A	93978	broad.mit.edu	37	chr12	8628802	8628802	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaataataattggcaaTggattgataagacaccttat	8	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8628802	C	C	8628802	3	2	61	1	0	0	0	0	1	0	0	0	3552	1464	51	5	469	5	CLEC6A	12	8628802	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	254267	8628802	125223093	4727	72972											
A2ML1	144568	broad.mit.edu	37	chr12	8975980	8975980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaagcacagactcagccCtcactcgaatcccttacttg	6	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8975980	A	A	8975980	1	1	61	0	1	0	0	0	0	0	0	0	5	696	24	2		2	A2ML1	12	8975980	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	347178	8975980	124875915	4728	72973											
A2ML1	144568	broad.mit.edu	37	chr12	8990976	8990976	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacctgtggacatggccacCtttgacctcattggatatgc	10	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8990976	A	A	8990976	2	1	61	1	0	0	0	0	0	0	0	1	5	668	24	2		2	A2ML1	12	8990976	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14996	8990976	124860919	4729	72974											
A2ML1	144568	broad.mit.edu	37	chr12	9002792	9002792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcttttgagtcatcaaCtcctttacatcaagcagagg	9	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9002792	A	A	9002792	3	1	61	1	0	0	0	0	1	0	0	0	5	565	20	3	2226	3	A2ML1	12	9002792	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11816	9002792	124849103	4730	72975											
KLRG1	10219	broad.mit.edu	37	chr12	9147751	9147751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgccagctgtcctagctGcccagaccgctggatgaaat	11	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9147751	T	T	9147751	3	4	61	1	0	0	0	0	1	0	0	0	8492	1319	46	3	234	3	KLRG1	12	9147751	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	144959	9147751	124704144	4731	72976											
A2M	2	broad.mit.edu	37	chr12	9222545	9222545	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtaaggaaatatataaTgtaatacaattaaaaatgaa	5	1	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9222545	A	A	9222545	1	1	61	0	1	0	0	0	0	0	0	0	4	1479	51	5		5	A2M	12	9222545	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	74794	9222545	124629350	4732	72977											
PZP	5858	broad.mit.edu	37	chr12	9310997	9310997	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtgtgtcaggctcagaAgtttgtggaacagttcacct	12	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9310997	C	C	9310997	1	2	61	0	1	0	0	0	0	0	0	0	12977	87	3	5		5	PZP	12	9310997	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	88452	9310997	124540898	4733	72978											
PZP	5858	broad.mit.edu	37	chr12	9315314	9315314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagaaccacatggattccTttctttgatgggtagggttt	11	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9315314	A	A	9315314	1	1	61	0	1	0	0	0	0	0	0	0	12977	1624	56	5		5	PZP	12	9315314	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4317	9315314	124536581	4734	72979											
PZP	5858	broad.mit.edu	37	chr12	9344805	9344805	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactgtctcctgactccacAggcagagtgtgggttccaga	11	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9344805	T	T	9344805	2	4	61	1	0	0	0	0	0	0	0	1	12977	175	7	5		5	PZP	12	9344805	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	29491	9344805	124507090	4735	72980											
CLEC12A	160364	broad.mit.edu	37	chr12	10133380	10133380	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggatagagaggggtgtggcAtgttggagaagacttcaatc	17	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10133380	T	T	10133380	1	4	61	0	1	0	0	0	0	0	0	0	3529	232	8	5		5	CLEC12A	12	10133380	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	788575	10133380	123718515	4736	72981											
CLEC9A	283420	broad.mit.edu	37	chr12	10217499	10217499	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaagttagaaacatgaggGaattcaaaagtttatttcac	8	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10217499	T	T	10217499	1	4	61	0	1	0	0	0	0	0	0	0	3554	1189	41	3		3	CLEC9A	12	10217499	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	84119	10217499	123634396	4737	72982											
OLR1	4973	broad.mit.edu	37	chr12	10312443	10312443	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaaattccagaataaaactCaaagacttttttcttttctt	2	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10312443	A	A	10312443	1	1	61	0	1	0	0	0	0	0	0	0	10957	841	29	3		3	OLR1	12	10312443	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	94944	10312443	123539452	4738	72983											
STYK1	55359	broad.mit.edu	37	chr12	10786320	10786320	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaggcactcatatagtcaaAgttttgatagtccaacagga	8	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10786320	C	C	10786320	1	2	61	0	1	0	0	0	0	0	0	0	15477	87	3	5		5	STYK1	12	10786320	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	473877	10786320	123065575	4739	72984											
PRB4	5545	broad.mit.edu	37	chr12	11201907	11201907	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccttaataacactggttgTgattcccttaatatccagac	6	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11201907	G	G	11201907	1	3	61	0	1	0	0	0	0	0	0	0	12551	1711	59	5		5	PRB4	12	11201907	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	415587	11201907	122649988	4740	72985											
PRB4	5545	broad.mit.edu	37	chr12	11462214	11462214	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cattaatcaattcctgaaagGaaagtgttgataagaagaca	8	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11462214	C	C	11462214	1	2	61	0	1	0	0	0	0	0	0	0	12551	1189	41	4		4	PRB4	12	11462214	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	260307	11462214	122389681	4741	72986											
PRB2	653247	broad.mit.edu	37	chr12	11548599	11548599	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacctcagagactggcttcTgctttgctcactgcaggtca	9	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11548599	G	G	11548599	1	3	61	0	1	0	0	0	0	0	0	0	12549	1595	55	5		5	PRB2	12	11548599	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	86385	11548599	122303296	4742	72987											
ETV6	2120	broad.mit.edu	37	chr12	12106274	12106274	+	Intron	DEL	A	-	-													gagtggagttacagaaggtgAagggccacagaggagaatgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12106274	-	-	12106274	6	5	61	0	1	1	0	1	0	0	0	0	5325	261	9	0		0	ETV6	12	12106274	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	557675	12106274	121745621	4743	72988											
PTPRO	5800	broad.mit.edu	37	chr12	15585407	15585407	+	Intron	DEL	T	-	-													gcaatgaatatatatgtgcaTgtgtcttcatgatagaacaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15585407	-	-	15585407	6	5	61	0	1	1	0	1	0	0	0	0	12917	1479	51	0		0	PTPRO	12	15585407	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	3479133	15585407	118266488	4744	72989											
PTPRO	5800	broad.mit.edu	37	chr12	15668395	15668395	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaacattctgaaatcccAgctctaaataaatcttattg	5	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15668395	T	T	15668395	1	4	61	0	1	0	0	0	0	0	0	0	12917	203	7	5		5	PTPRO	12	15668395	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	82988	15668395	118183500	4745	72990											
STRAP	11171	broad.mit.edu	37	chr12	16053067	16053067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcattaattttatttcagGgttcctgttttctataaatt	4	5	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16053067	T	T	16053067	1	4	61	0	1	0	0	0	0	0	0	0	15444	1247	43	2		2	STRAP	12	16053067	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	384672	16053067	117798828	4746	72991											
PIK3C2G	5288	broad.mit.edu	37	chr12	18587589	18587590	+	Intron	DEL	TA	-	-													aggaaagtggtccatgtatgTatatatacagaagcaaaatg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18587590	-	-	18587589	6	5	61	0	1	1	0	1	0	0	0	0	12006	1653	57	0		0	PIK3C2G	12	18587589	Intron	DEL	TA	TCGA-17-Z031-01A-01W-0746-08	2534522	18587589	115264306	4747	72992											
PIK3C2G	5288	broad.mit.edu	37	chr12	18701280	18701280	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaacaattatagtgctgtAgcttactattagtccctcct	6	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18701280	T	T	18701280	1	4	61	0	1	0	0	0	0	0	0	0	12006	435	15	5		5	PIK3C2G	12	18701280	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	113691	18701280	115150615	4748	72993											
PLCZ1	89869	broad.mit.edu	37	chr12	18889838	18889839	+	Intron	INS	-	A	A													acactcaagacagtaccatcINSaaaaagcatcagaaatacca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18889839	A	A	18889838	6	5	61	0	1	1	1	0	0	0	0	0	12139	841	29	0		0	PLCZ1	12	18889838	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	188558	18889838	114962057	4749	72994											
CAPZA3	93661	broad.mit.edu	37	chr12	18891236	18891236	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgagcaggaaggacaagGaaagagtaattcgcagactg	14	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18891236	T	T	18891236	4	4	61	1	0	0	0	0	0	1	0	0	2668	1175	41	3	36	3	CAPZA3	12	18891236	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1398	18891236	114960659	4750	72995											
PDE3A	5139	broad.mit.edu	37	chr12	20705545	20705545	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcccgagcagggccgggtCcccgcgccggacatccaaga	15	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20705545	A	A	20705545	1	1	61	0	1	0	0	0	0	0	0	0	11731	870	30	3		3	PDE3A	12	20705545	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1814309	20705545	113146350	4751	72996											
SLCO1C1	53919	broad.mit.edu	37	chr12	20876217	20876217	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctgcctttcatgctttctCagagggactgtcttagaggt	10	9	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20876217	A	A	20876217	1	1	61	0	1	0	0	0	0	0	0	0	14839	841	29	3		3	SLCO1C1	12	20876217	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	170672	20876217	112975678	4752	72997											
SLCO1C1	53919	broad.mit.edu	37	chr12	20890330	20890330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttacctctgcctggtcctTttttgtagaaaaagaaaatg	7	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20890330	A	A	20890330	1	1	61	0	1	0	0	0	0	0	0	0	14839	1856	64	5		5	SLCO1C1	12	20890330	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	14113	20890330	112961565	4753	72998											
SLCO1C1	53919	broad.mit.edu	37	chr12	20903534	20903534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaattagattaaagtaaGtggtttcagataatcgttca	8	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20903534	T	T	20903534	1	4	61	0	1	0	0	0	0	0	0	0	14839	1044	36	3		3	SLCO1C1	12	20903534	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13204	20903534	112948361	4754	72999											
LST-3TM12	338821	broad.mit.edu	37	chr12	21207570	21207570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattccgtgctggtgattaGgtaagtatgatgttttaaaa	10	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21207570	T	T	21207570	3	4	61	1	0	0	0	0	1	0	0	0	9153	1014	35	2	1579	2	LST-3TM12	12	21207570	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	304036	21207570	112644325	4755	73000											
SLCO1A2	6579	broad.mit.edu	37	chr12	21468332	21468332	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcccatctgatggacagatCcttgaagagtgtggaataaa	12	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21468332	A	A	21468332	1	1	61	0	1	0	0	0	0	0	0	0	14836	870	30	3		3	SLCO1A2	12	21468332	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	260762	21468332	112383563	4756	73001											
SLCO1A2	6579	broad.mit.edu	37	chr12	21472160	21472160	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctgataacttaaacatgtCttcagagctacaatgatatc	6	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21472160	A	A	21472160	1	1	61	0	1	0	0	0	0	0	0	0	14836	928	32	3		3	SLCO1A2	12	21472160	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3828	21472160	112379735	4757	73002											
ABCC9	10060	broad.mit.edu	37	chr12	21957992	21957992	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaataacaccctgcagttAgttccctcatctcagccctt	5	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21957992	G	G	21957992	1	3	61	0	1	0	0	0	0	0	0	0	59	435	15	5		5	ABCC9	12	21957992	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	485832	21957992	111893903	4758	73003											
ABCC9	10060	broad.mit.edu	37	chr12	21965128	21965128	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagttacacacacatagtaAaatcacaagtaaaataatat	4	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21965128	G	G	21965128	1	3	61	0	1	0	0	0	0	0	0	0	59	29	1	5		5	ABCC9	12	21965128	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	7136	21965128	111886767	4759	73004											
ETNK1	55500	broad.mit.edu	37	chr12	22797062	22797062	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagcaactatttggttaacTtagaaactttctttagctag	7	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22797062	A	A	22797062	1	1	61	0	1	0	0	0	0	0	0	0	5315	1624	56	5		5	ETNK1	12	22797062	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	831934	22797062	111054833	4760	73005											
SOX5	6660	broad.mit.edu	37	chr12	24049026	24049026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaatgccgtcattgtgtgGttaggggccattgtaacaga	12	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24049026	T	T	24049026	1	4	61	0	1	0	0	0	0	0	0	0	15068	1276	44	3		3	SOX5	12	24049026	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1251964	24049026	109802869	4761	73006											
SOX5	6660	broad.mit.edu	37	chr12	24365348	24365348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtataatgaaaactgaaaaaGccactggtagttgttctaca	8	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24365348	T	T	24365348	1	4	61	0	1	0	0	0	0	0	0	0	15068	986	34	3		3	SOX5	12	24365348	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	316322	24365348	109486547	4762	73007											
SOX5	6660	broad.mit.edu	37	chr12	24590909	24590909	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattctactataaagacacAtgcacacgtatgtttactgc	5	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24590909	T	T	24590909	1	4	61	0	1	0	0	0	0	0	0	0	15068	232	8	5		5	SOX5	12	24590909	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	225561	24590909	109260986	4763	73008											
LRMP	4033	broad.mit.edu	37	chr12	25232316	25232316	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacattccaaaacatgtttGctatctttttggcagggaat	8	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25232316	C	C	25232316	1	2	61	0	1	0	0	0	0	0	0	0	9037	1334	46	4		4	LRMP	12	25232316	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	641407	25232316	108619579	4764	73009											
CASC1	55259	broad.mit.edu	37	chr12	25315929	25315929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaagaggacccacagacCctgtgaagggagcgatctgc	12	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25315929	A	A	25315929	1	1	61	0	1	0	0	0	0	0	0	0	2686	638	22	2		2	CASC1	12	25315929	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83613	25315929	108535966	4765	73010											
IFLTD1	160492	broad.mit.edu	37	chr12	25679653	25679653	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagactgtcagtgtcaacaAgtttgtcctgtacaattcta	7	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25679653	C	C	25679653	1	2	61	0	1	0	0	0	0	0	0	0	7600	87	3	5		5	IFLTD1	12	25679653	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	363724	25679653	108172242	4766	73011											
ITPR2	3709	broad.mit.edu	37	chr12	26660789	26660792	+	Intron	DEL	TCTG	-	-													tatctctctactcttctctcTctgtctctgtgtgtgtgtgt					rs149217237		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26660792	-	-	26660789	6	5	61	0	1	1	0	1	0	0	0	0	7991	1566	54	0		0	ITPR2	12	26660789	Intron	DEL	TCTG	TCGA-17-Z031-01A-01W-0746-08	981136	26660789	107191106	4767	73012											
PPFIBP1	8496	broad.mit.edu	37	chr12	27827253	27827253	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaactttcagaacctctAgaacattatgctaaatgaag	5	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27827253	T	T	27827253	1	4	61	0	1	0	0	0	0	0	0	0	12409	435	15	5		5	PPFIBP1	12	27827253	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1166464	27827253	106024642	4768	73013											
OVCH1	341350	broad.mit.edu	37	chr12	29583673	29583673	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccaggctacccacctccCagctgcgaaatcaagtatgg	9	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29583673	T	T	29583673	1	4	61	0	1	0	0	0	0	0	0	0	11417	609	21	4		4	OVCH1	12	29583673	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1756420	29583673	104268222	4769	73014											
OVCH1	341350	broad.mit.edu	37	chr12	29625924	29625924	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctagttaatgaagaaacAagattaaacagatagtaata	6	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29625924	T	T	29625924	1	4	61	0	1	0	0	0	0	0	0	0	11417	145	5	5		5	OVCH1	12	29625924	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	42251	29625924	104225971	4770	73015											
OVCH1	341350	broad.mit.edu	37	chr12	29630261	29630261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcaaggaattaaatacCtgaaacactcacctgcttct	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29630261	A	A	29630261	1	1	61	0	1	0	0	0	0	0	0	0	11417	696	24	2		2	OVCH1	12	29630261	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4337	29630261	104221634	4771	73016											
OVCH1	341350	broad.mit.edu	37	chr12	29649067	29649067	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacaaatctgccagtcgcAtagccaggaatcaaggcctg	10	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29649067	G	G	29649067	1	3	61	0	1	0	0	0	0	0	0	0	11417	232	8	5		5	OVCH1	12	29649067	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	18806	29649067	104202828	4772	73017											
CAPRIN2	65981	broad.mit.edu	37	chr12	30863016	30863016	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggctgataccaagacctcTtcattcttcatgaggttgac	8	10	4	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30863016	A	A	30863016	3	1	61	1	0	0	0	0	1	0	0	0	2662	1606	56	5	183	5	CAPRIN2	12	30863016	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1213949	30863016	102988879	4773	73018											
DENND5B	160518	broad.mit.edu	37	chr12	31566440	31566441	+	Silent	DNP	TT	GA	GA													cttcttttctagagacagtcTtatccacgcccgagctcgtc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	31566441	GA	GA	31566440	2	3	61	1	0	0	0	0	0	0	0	1	4477	1617	56	5		5	DENND5B	12	31566440	Silent	DNP	TT	TCGA-17-Z031-01A-01W-0746-08	703424	31566440	102285455	4774	73019											
BICD1	636	broad.mit.edu	37	chr12	32458750	32458750	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgagcaccaactggaagaAgccctcgagactttaaaaaa	9	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32458750	T	T	32458750	3	4	61	1	0	0	0	0	1	0	0	0	1434	69	3	5	713	5	BICD1	12	32458750	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	892310	32458750	101393145	4775	73020											
CPNE8	144402	broad.mit.edu	37	chr12	39266773	39266774	+	Intron	DNP	CC	GA	GA													aacttactgtatcttcaagcCcagtgatttttttaaaaaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	39266774	GA	GA	39266773	1	3	61	0	1	0	0	0	0	0	0	0	3850	638	22	4		4	CPNE8	12	39266773	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	6808023	39266773	94585122	4776	73021											
KIF21A	55605	broad.mit.edu	37	chr12	39735795	39735795	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaaccaagaacaaccaaaCctggtgactaaaactgacaa	5	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39735795	T	T	39735795	1	4	61	0	1	0	0	0	0	0	0	0	8358	522	18	4		4	KIF21A	12	39735795	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	469022	39735795	94116100	4777	73022											
C12orf40	283461	broad.mit.edu	37	chr12	40040149	40040149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaactgtgagaaaaccaaCccatgtgaacatgaatagag	9	7	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40040149	A	A	40040149	3	1	61	1	0	0	0	0	1	0	0	0	1699	507	18	3	235	3	C12orf40	12	40040149	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	304354	40040149	93811746	4778	73023											
C12orf40	283461	broad.mit.edu	37	chr12	40066087	40066087	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgatggtgcatgggtgtaGgctgtagtgaacagggcagg	18	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40066087	A	A	40066087	1	1	61	0	1	0	0	0	0	0	0	0	1699	1015	35	4		4	C12orf40	12	40066087	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25938	40066087	93785808	4779	73024											
LRRK2	120892	broad.mit.edu	37	chr12	40651201	40651201	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatatagattcattaacttGtacagaatatatcatattgg	5	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40651201	C	C	40651201	1	2	61	0	1	0	0	0	0	0	0	0	9120	1392	48	4		4	LRRK2	12	40651201	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	585114	40651201	93200694	4780	73025											
LRRK2	120892	broad.mit.edu	37	chr12	40734977	40734977	+	Intron	DEL	G	-	-													aagtaaatcatttaggggttGgcatttgtttggagtgtggg					rs35237109		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40734977	-	-	40734977	6	5	61	0	1	1	0	1	0	0	0	0	9120	1363	47	0		0	LRRK2	12	40734977	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	83776	40734977	93116918	4781	73026											
LRRK2	120892	broad.mit.edu	37	chr12	40758836	40758836	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaattcggtcagagtcatGatgacagcacagctaggcaa	11	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40758836	A	A	40758836	3	1	61	1	0	0	0	0	1	0	0	0	9120	1290	45	4	7568	4	LRRK2	12	40758836	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23859	40758836	93093059	4782	73027											
CNTN1	1272	broad.mit.edu	37	chr12	41199120	41199120	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taccatctgatattgttccaGagtccttggaagctctgcac	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41199120	A	A	41199120	1	1	61	0	1	0	0	0	0	0	0	0	3672	957	33	4		4	CNTN1	12	41199120	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	440284	41199120	92652775	4783	73028											
CNTN1	1272	broad.mit.edu	37	chr12	41323558	41323558	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaattatgtaacaactttggGagaagcacttaatatttaga	7	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41323558	T	T	41323558	1	4	61	0	1	0	0	0	0	0	0	0	3672	1189	41	3		3	CNTN1	12	41323558	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	124438	41323558	92528337	4784	73029											
CNTN1	1272	broad.mit.edu	37	chr12	41323682	41323682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtgtctcagacaaatgGcaatctctacattgcaaatg	7	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41323682	T	T	41323682	3	4	61	1	0	0	0	0	1	0	0	0	3672	1203	42	3	603	3	CNTN1	12	41323682	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	124	41323682	92528213	4785	73030											
CNTN1	1272	broad.mit.edu	37	chr12	41410621	41410621	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccataaagatgaaaccatGagcccttccactgcatttca	6	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41410621	A	A	41410621	3	1	61	1	0	0	0	0	1	0	0	0	3672	1290	45	4	2392	4	CNTN1	12	41410621	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	86939	41410621	92441274	4786	73031											
CNTN1	1272	broad.mit.edu	37	chr12	41422924	41422924	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcaactcacaaacactcCatagaagtcccaatccccag	3	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41422924	A	A	41422924	2	1	61	1	0	0	0	0	0	0	0	1	3672	581	21	2		2	CNTN1	12	41422924	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12303	41422924	92428971	4787	73032											
CNTN1	1272	broad.mit.edu	37	chr12	41441374	41441374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggaatcataccatcaccCtctcccacccatttcccctt	2	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41441374	A	A	41441374	1	1	61	0	1	0	0	0	0	0	0	0	3672	696	24	2		2	CNTN1	12	41441374	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18450	41441374	92410521	4788	73033											
CNTN1	1272	broad.mit.edu	37	chr12	41463718	41463719	+	Intron	DEL	TG	-	-													ctaaatgagcaatagtgacaTgtatcaatgaaataatatgc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41463719	-	-	41463718	6	5	61	0	1	1	0	1	0	0	0	0	3672	1479	51	0		0	CNTN1	12	41463718	Intron	DEL	TG	TCGA-17-Z031-01A-01W-0746-08	22344	41463718	92388177	4789	73034											
ADAMTS20	80070	broad.mit.edu	37	chr12	43769737	43769737	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtttaggtcctaacatgtCtacctgctcctacattattt	5	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43769737	A	A	43769737	1	1	61	0	1	0	0	0	0	0	0	0	266	928	32	3		3	ADAMTS20	12	43769737	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2306019	43769737	90082158	4790	73035											
ADAMTS20	80070	broad.mit.edu	37	chr12	43826341	43826341	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaattatacttcagagTaacataaatacgtaattaga	4	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43826341	A	A	43826341	1	1	61	0	1	0	0	0	0	0	0	0	266	1653	57	5		5	ADAMTS20	12	43826341	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	56604	43826341	90025554	4791	73036											
ADAMTS20	80070	broad.mit.edu	37	chr12	43856708	43856708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacctaccattccaggaCcgcagtctgttccatctgct	7	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43856708	A	A	43856708	3	1	61	1	0	0	0	0	1	0	0	0	266	507	18	3	4243	3	ADAMTS20	12	43856708	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30367	43856708	89995187	4792	73037											
ADAMTS20	80070	broad.mit.edu	37	chr12	43862300	43862300	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attacactaataacattttaTgaagaaacaaaggtactaat	4	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43862300	C	C	43862300	1	2	61	0	1	0	0	0	0	0	0	0	266	1479	51	5		5	ADAMTS20	12	43862300	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5592	43862300	89989595	4793	73038											
ADAMTS20	80070	broad.mit.edu	37	chr12	43884264	43884264	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataaaagatttattttgaaGcatttttggaaaatattttt	5	1	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43884264	C	C	43884264	1	2	61	0	1	0	0	0	0	0	0	0	266	986	34	4		4	ADAMTS20	12	43884264	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21964	43884264	89967631	4794	73039											
PUS7L	83448	broad.mit.edu	37	chr12	44136171	44136171	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgtttacatgcatttaTatgctagagttaagaaagca	9	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44136171	A	A	44136171	1	1	61	0	1	0	0	0	0	0	0	0	12942	1421	49	5		5	PUS7L	12	44136171	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	251907	44136171	89715724	4795	73040											
IRAK4	51135	broad.mit.edu	37	chr12	44180237	44180237	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaattgaagatgaagaaaaGacaattgaagattatattga	9	1	0	8			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44180237	T	T	44180237	3	4	61	1	0	0	0	0	1	0	0	0	7895	933	33	3	1262	3	IRAK4	12	44180237	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44066	44180237	89671658	4796	73041											
TWF1	5756	broad.mit.edu	37	chr12	44196110	44196110	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagaatgatctggagaccaTgcaatgaatatccattcata	8	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44196110	A	A	44196110	2	1	61	1	0	0	0	0	0	0	0	1	16907	1451	51	5		5	TWF1	12	44196110	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15873	44196110	89655785	4797	73042											
TMEM117	84216	broad.mit.edu	37	chr12	44403889	44403889	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagacccattagtctcccAcatagcccccatctgggggt	8	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44403889	G	G	44403889	1	3	61	0	1	0	0	0	0	0	0	0	16154	174	6	5		5	TMEM117	12	44403889	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	207779	44403889	89448006	4798	73043											
TMEM117	84216	broad.mit.edu	37	chr12	44537325	44537325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgtgtgtttgtttccaCagagcatatatcattacaga	8	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44537325	A	A	44537325	1	1	61	0	1	0	0	0	0	0	0	0	16154	493	17	3		3	TMEM117	12	44537325	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	133436	44537325	89314570	4799	73044											
TMEM117	84216	broad.mit.edu	37	chr12	44642420	44642420	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcccactcctcccgtgagaAgtcctccaatgctgcctgcc	8	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44642420	C	C	44642420	1	2	61	0	1	0	0	0	0	0	0	0	16154	87	3	5		5	TMEM117	12	44642420	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	105095	44642420	89209475	4800	73045											
NELL2	4753	broad.mit.edu	37	chr12	45042401	45042401	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgaagaggtaaaaacttAcagagaatgagatagtatca	9	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45042401	G	G	45042401	1	3	61	0	1	0	0	0	0	0	0	0	10429	406	14	5		5	NELL2	12	45042401	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	399981	45042401	88809494	4801	73046											
NELL2	4753	broad.mit.edu	37	chr12	45170741	45170741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtataagaagagcctcgaagGtgaaaatctatggttataaa	10	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45170741	T	T	45170741	1	4	61	0	1	0	0	0	0	0	0	0	10429	1276	44	3		3	NELL2	12	45170741	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	128340	45170741	88681154	4802	73047											
NELL2	4753	broad.mit.edu	37	chr12	45171087	45171087	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacaagtaattggacatctTgcattataccctgtgtgtga	9	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45171087	A	A	45171087	3	1	61	1	0	0	0	0	1	0	0	0	10429	1812	63	5	1893	5	NELL2	12	45171087	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	346	45171087	88680808	4803	73048											
NELL2	4753	broad.mit.edu	37	chr12	45182080	45182080	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggaccctctgaaggaagcaGattgctcctgcaggacaccg	12	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45182080	T	T	45182080	1	4	61	0	1	0	0	0	0	0	0	0	10429	957	33	3		3	NELL2	12	45182080	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10993	45182080	88669815	4804	73049											
ANO6	196527	broad.mit.edu	37	chr12	45663410	45663410	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaatgtaatgttcatattAcagtcaaccatgcaaatcaa	7	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45663410	G	G	45663410	1	3	61	0	1	0	0	0	0	0	0	0	701	406	14	5		5	ANO6	12	45663410	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	481330	45663410	88188485	4805	73050											
ANO6	196527	broad.mit.edu	37	chr12	45667478	45667479	+	Intron	DNP	GG	TT	TT													ggttctttgctgtgagccttGgtctgcttcctatttacgcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	45667479	TT	TT	45667478	1	4	61	0	1	0	0	0	0	0	0	0	701	1363	47	2		2	ANO6	12	45667478	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	4068	45667478	88184417	4806	73051											
SLC38A1	81539	broad.mit.edu	37	chr12	46622958	46622958	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagtaggattccagtgtTtgccagggcaaaggcgagtc	13	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46622958	A	A	46622958	3	1	61	1	0	0	0	0	1	0	0	0	14715	1841	64	5	1223	5	SLC38A1	12	46622958	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	955480	46622958	87228937	4807	73052											
RPAP3	79657	broad.mit.edu	37	chr12	48057387	48057387	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcaactgaaaaagaaaaAgaaattctccattttaatct	5	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48057387	G	G	48057387	1	3	61	0	1	0	0	0	0	0	0	0	13654	87	3	5		5	RPAP3	12	48057387	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1434429	48057387	85794508	4808	73053											
COL2A1	1280	broad.mit.edu	37	chr12	48370314	48370314	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactctagggccagaaggacCagcaggaccagaagcacctt	11	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48370314	G	G	48370314	3	3	61	1	0	0	0	0	1	0	0	0	3719	594	21	4	1015	4	COL2A1	12	48370314	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	312927	48370314	85481581	4809	73054											
COL2A1	1280	broad.mit.edu	37	chr12	48375878	48375878	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccagcagtccagcagcccGcattcacttactcgtccacc	7	19	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48375878	A	A	48375878	1	1	61	0	1	0	0	0	0	0	0	0	3719	1102	38	4		4	COL2A1	12	48375878	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5564	48375878	85476017	4810	73055											
COL2A1	1280	broad.mit.edu	37	chr12	48391620	48391620	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttgggggacctgggaagtCcaccagggtcaagcagcatt	14	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48391620	A	A	48391620	1	1	61	0	1	0	0	0	0	0	0	0	3719	870	30	3		3	COL2A1	12	48391620	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15742	48391620	85460275	4811	73056											
PFKM	5213	broad.mit.edu	37	chr12	48522805	48522805	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgttcctaatatgaaacAcacatatgggacacctgctg	7	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48522805	T	T	48522805	1	4	61	0	1	0	0	0	0	0	0	0	11860	174	6	5		5	PFKM	12	48522805	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	131185	48522805	85329090	4812	73057											
PFKM	5213	broad.mit.edu	37	chr12	48538854	48538854	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgataggaattttgccactaAgatgggcgccaaggctatga	12	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48538854	C	C	48538854	3	2	61	1	0	0	0	0	1	0	0	0	11860	72	3	5	2332	5	PFKM	12	48538854	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	16049	48538854	85313041	4813	73058											
H1FNT	341567	broad.mit.edu	37	chr12	48723814	48723814	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagagaagcaggagcccaAgaagcccgcacagcggacca	14	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48723814	C	C	48723814	3	2	61	1	0	0	0	0	1	0	0	0	6986	72	3	5	742	5	H1FNT	12	48723814	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	184960	48723814	85128081	4814	73059											
ADCY6	112	broad.mit.edu	37	chr12	49166296	49166296	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccctcacttaccagtcCagcccatcaaaggtctcatt	7	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49166296	A	A	49166296	2	1	61	1	0	0	0	0	0	0	0	1	298	581	21	2		2	ADCY6	12	49166296	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	442482	49166296	84685599	4815	73060											
DDX23	9416	broad.mit.edu	37	chr12	49231390	49231390	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcctcatttccattggtctCccgttccatcctctccctgc	4	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49231390	A	A	49231390	4	1	61	1	0	0	0	0	0	1	0	0	4383	864	30	3	1836	3	DDX23	12	49231390	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	65094	49231390	84620505	4816	73061											
WNT10B	7480	broad.mit.edu	37	chr12	49362188	49362188	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaataaacagcccccctCcaactccagaaattcctaac	3	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49362188	A	A	49362188	1	1	61	0	1	0	0	0	0	0	0	0	17510	870	30	3		3	WNT10B	12	49362188	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	130798	49362188	84489707	4817	73062											
MLL2	8085	broad.mit.edu	37	chr12	49420124	49420124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcgcgtggcctcgtagcCcacgggatagagggcagtgg	18	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49420124	A	A	49420124	3	1	61	1	0	0	0	0	1	0	0	0	9714	623	22	2	1016	2	MLL2	12	49420124	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	57936	49420124	84431771	4818	73063											
TUBA1C	84790	broad.mit.edu	37	chr12	49666756	49666756	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccactgtggtgcctggcGgagacctggccaaggtacag	14	13	0	1	rs146417733		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49666756	T	T	49666756	4	4	61	1	0	0	0	0	0	1	0	0	16871	1117	39	1	1110	1	TUBA1C	12	49666756	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	246632	49666756	84185139	4819	73064											
KCNH3	23416	broad.mit.edu	37	chr12	49948152	49948152	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatcggctgtgagctgcccCggcgggagcaggtggtaaag	18	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49948152	G	G	49948152	3	3	61	1	0	0	0	0	1	0	0	0	8103	643	23	4	1993	4	KCNH3	12	49948152	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	281396	49948152	83903743	4820	73065											
KCNH3	23416	broad.mit.edu	37	chr12	49948284	49948284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccccgcgcttcagtcgtGgcctccgaggggagctcagc	14	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49948284	T	T	49948284	3	4	61	1	0	0	0	0	1	0	0	0	8103	1348	47	2	2125	2	KCNH3	12	49948284	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132	49948284	83903611	4821	73066											
FAIM2	23017	broad.mit.edu	37	chr12	50279933	50279934	+	Intron	DNP	CC	AA	AA													ccattgtcaataaatgttgaCcttgaatgcctttccgagag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50279934	AA	AA	50279933	1	1	61	0	1	0	0	0	0	0	0	0	5422	522	18	3		3	FAIM2	12	50279933	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	331649	50279933	83571962	4822	73067											
FAIM2	23017	broad.mit.edu	37	chr12	50284484	50284484	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaagacggtcaggagaatCaggttccaggggaaatgcct	13	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50284484	A	A	50284484	2	1	61	1	0	0	0	0	0	0	0	1	5422	813	29	3		3	FAIM2	12	50284484	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4551	50284484	83567411	4823	73068											
AQP6	363	broad.mit.edu	37	chr12	50367074	50367074	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacggggctgtatgtgttcTttggcgtgggctcagtcatg	15	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50367074	C	C	50367074	3	2	61	1	0	0	0	0	1	0	0	0	832	1609	56	5	120	5	AQP6	12	50367074	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	82590	50367074	83484821	4824	73069											
TMPRSS12	283471	broad.mit.edu	37	chr12	51252735	51252735	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaagcagtgaggtataAtgactatattcagcctattt	7	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51252735	T	T	51252735	3	4	61	1	0	0	0	0	1	0	0	0	16367	101	4	5	561	5	TMPRSS12	12	51252735	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	885661	51252735	82599160	4825	73070											
TMPRSS12	283471	broad.mit.edu	37	chr12	51281356	51281356	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccctttctatgttctataTaatgaacatcatttattctt	3	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51281356	A	A	51281356	1	1	61	0	1	0	0	0	0	0	0	0	16367	1421	49	5		5	TMPRSS12	12	51281356	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	28621	51281356	82570539	4826	73071											
SLC11A2	4891	broad.mit.edu	37	chr12	51384438	51384438	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggattcaagcaatcctcCcgcctcagcctcccaaagta	6	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51384438	T	T	51384438	1	4	61	0	1	0	0	0	0	0	0	0	14494	638	22	4		4	SLC11A2	12	51384438	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	103082	51384438	82467457	4827	73072											
SLC11A2	4891	broad.mit.edu	37	chr12	51393097	51393097	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacatgacagagagcagctCctttgaccctcccattcccg	7	17	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51393097	A	A	51393097	1	1	61	0	1	0	0	0	0	0	0	0	14494	870	30	3		3	SLC11A2	12	51393097	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8659	51393097	82458798	4828	73073											
BIN2	51411	broad.mit.edu	37	chr12	51717924	51717924	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgccgccctggccccgcGccctgtggttttctgaggcc	14	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51717924	A	A	51717924	1	1	61	0	1	0	0	0	0	0	0	0	1439	1102	38	4		4	BIN2	12	51717924	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	324827	51717924	82133971	4829	73074											
CELA1	1990	broad.mit.edu	37	chr12	51723338	51723338	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccgtggaaggaagggaaGggagtaaacacatgaatgtg	15	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51723338	A	A	51723338	1	1	61	0	1	0	0	0	0	0	0	0	3240	1015	35	4		4	CELA1	12	51723338	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5414	51723338	82128557	4830	73075											
SLC4A8	9498	broad.mit.edu	37	chr12	51851020	51851020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaattgcacctcaatgacCctagtggagctgcttccccc	8	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51851020	A	A	51851020	1	1	61	0	1	0	0	0	0	0	0	0	14773	638	22	2		2	SLC4A8	12	51851020	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	127682	51851020	82000875	4831	73076											
KRT80	144501	broad.mit.edu	37	chr12	52565868	52565868	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgactaagccaagacttaaaCccaggcctggtaggctcact	9	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52565868	G	G	52565868	1	3	61	0	1	0	0	0	0	0	0	0	8565	522	18	4		4	KRT80	12	52565868	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	714848	52565868	81286027	4832	73077											
KRT81	3887	broad.mit.edu	37	chr12	52681806	52681806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggcctcggcccggctgcGggtgacaatgtcgtcatact	13	14	1	1	rs144716678	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52681806	T	T	52681806	3	4	61	1	0	0	0	0	1	0	0	0	8566	1116	39	1	675	1	KRT81	12	52681806	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	115938	52681806	81170089	4833	73078											
KRT75	9119	broad.mit.edu	37	chr12	52826763	52826763	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctttgcacctctctggtCctcacacaaaggagccttca	6	16	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52826763	T	T	52826763	1	4	61	0	1	0	0	0	0	0	0	0	8559	870	30	4		4	KRT75	12	52826763	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	144957	52826763	81025132	4834	73079											
KRT6B	3854	broad.mit.edu	37	chr12	52844334	52844334	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggttctgcctcacagtcTtggtgccctgctcctgcagc	10	16	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52844334	G	G	52844334	3	3	61	1	0	0	0	0	1	0	0	0	8552	1609	56	5	1115	5	KRT6B	12	52844334	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17571	52844334	81007561	4835	73080											
KRT6B	3854	broad.mit.edu	37	chr12	52845504	52845504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagggcccccaaagccaCcagcaaggccggctccacca	10	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52845504	A	A	52845504	3	1	61	1	0	0	0	0	1	0	0	0	8552	507	18	3	1371	3	KRT6B	12	52845504	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1170	52845504	81006391	4836	73081											
KRT6A	3853	broad.mit.edu	37	chr12	52886967	52886967	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatggtggtggatgtgctGgccatggttccaggagatga	17	6	0	3	rs11540285		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52886967	T	T	52886967	2	4	61	1	0	0	0	0	0	0	0	1	8551	1335	47	2		2	KRT6A	12	52886967	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	41463	52886967	80964928	4837	73082											
KRT5	3852	broad.mit.edu	37	chr12	52910866	52910866	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagaactcaggccccttccTtgccctctttcaatctcacc	4	17	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52910866	G	G	52910866	1	3	61	0	1	0	0	0	0	0	0	0	8550	1624	56	5		5	KRT5	12	52910866	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23899	52910866	80941029	4838	73083											
KRT5	3852	broad.mit.edu	37	chr12	52913793	52913793	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccggcaccacctccaaaGccatagccgcctccagcacc	6	21	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52913793	T	T	52913793	2	4	61	1	0	0	0	0	0	0	0	1	8550	958	34	3		3	KRT5	12	52913793	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2927	52913793	80938102	4839	73084											
KRT71	112802	broad.mit.edu	37	chr12	52939552	52939552	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagaagttttggagactacCcccaaatctttggggtaacc	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52939552	G	G	52939552	1	3	61	0	1	0	0	0	0	0	0	0	8555	638	22	4		4	KRT71	12	52939552	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	25759	52939552	80912343	4840	73085											
KRT71	112802	broad.mit.edu	37	chr12	52943834	52943834	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcttgtagtcctccactAcgtcccgcacattcctcagc	5	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52943834	G	G	52943834	3	3	61	1	0	0	0	0	1	0	0	0	8555	391	14	5	968	5	KRT71	12	52943834	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4282	52943834	80908061	4841	73086											
KRT71	112802	broad.mit.edu	37	chr12	52944080	52944080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagtaatagtcacacgtGtctctcacagggcattgtgt	10	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52944080	T	T	52944080	1	4	61	0	1	0	0	0	0	0	0	0	8555	1392	48	3		3	KRT71	12	52944080	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	246	52944080	80907815	4842	73087											
KRT72	140807	broad.mit.edu	37	chr12	52986522	52986523	+	Intron	DNP	GG	TT	TT													acagcatgcatcccaggcaaGggacttggagggaggggctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	52986523	TT	TT	52986522	1	4	61	0	1	0	0	0	0	0	0	0	8556	1015	35	2		2	KRT72	12	52986522	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	42442	52986522	80865373	4843	73088											
KRT72	140807	broad.mit.edu	37	chr12	52986695	52986695	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttgagcaccacaaacTcattctcagcagctgtgcgt	7	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52986695	G	G	52986695	3	3	61	1	0	0	0	0	1	0	0	0	8556	1551	54	5	880	5	KRT72	12	52986695	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	173	52986695	80865200	4844	73089											
KRT1	3848	broad.mit.edu	37	chr12	53070045	53070045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaggttcgactcccagCgtcccttcctcacctgcttt	8	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53070045	A	A	53070045	1	1	61	0	1	0	0	0	0	0	0	0	8518	783	27	3		3	KRT1	12	53070045	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83350	53070045	80781850	4845	73090											
KRT1	3848	broad.mit.edu	37	chr12	53070112	53070112	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcaatctccagatccagGgccagctttgtgttcatcag	11	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53070112	T	T	53070112	2	4	61	1	0	0	0	0	0	0	0	1	8518	1219	43	2		2	KRT1	12	53070112	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67	53070112	80781783	4846	73091											
KRT77	374454	broad.mit.edu	37	chr12	53086372	53086372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgccacgcatcctggagGgcctgctcgcctctctcctc	9	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53086372	T	T	53086372	2	4	61	1	0	0	0	0	0	0	0	1	8561	1219	43	2		2	KRT77	12	53086372	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16260	53086372	80765523	4847	73092											
KRT77	374454	broad.mit.edu	37	chr12	53090317	53090317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattccccaaacatttgctGtcctgggttcagagaaccct	8	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53090317	T	T	53090317	1	4	61	0	1	0	0	0	0	0	0	0	8561	1392	48	3		3	KRT77	12	53090317	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3945	53090317	80761578	4848	73093											
KRT76	51350	broad.mit.edu	37	chr12	53162368	53162368	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaaccaggagttcagcTtcttctccagggaacttgag	12	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53162368	G	G	53162368	1	3	61	0	1	0	0	0	0	0	0	0	8560	1624	56	5		5	KRT76	12	53162368	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	72051	53162368	80689527	4849	73094											
KRT76	51350	broad.mit.edu	37	chr12	53165751	53165751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcaggtcatccccatgCctgccagctgtggtctgcag	10	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53165751	A	A	53165751	3	1	61	1	0	0	0	0	1	0	0	0	8560	738	26	3	765	3	KRT76	12	53165751	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3383	53165751	80686144	4850	73095											
KRT3	3850	broad.mit.edu	37	chr12	53184974	53184974	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagggggtgtgggaagacGggactggaggctcacctgta	19	8	1	1	rs78656321	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53184974	A	A	53184974	1	1	61	0	1	0	0	0	0	0	0	0	8537	1131	39	4		4	KRT3	12	53184974	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19223	53184974	80666921	4851	73096											
KRT79	338785	broad.mit.edu	37	chr12	53217599	53217599	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggagaagagcaggcctagCccctcggggtgacaatgaga	15	10	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53217599	G	G	53217599	1	3	61	0	1	0	0	0	0	0	0	0	8563	754	26	4		4	KRT79	12	53217599	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32625	53217599	80634296	4852	73097											
KRT78	196374	broad.mit.edu	37	chr12	53240158	53240158	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggaattctgttcatgcActgctcaacacccatccacc	5	16	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53240158	T	T	53240158	1	4	61	0	1	0	0	0	0	0	0	0	8562	174	6	5		5	KRT78	12	53240158	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	22559	53240158	80611737	4853	73098											
IGFBP6	3489	broad.mit.edu	37	chr12	53494814	53494814	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggttctaagctgcctactctCccttccccagggcccatgcc	8	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53494814	T	T	53494814	1	4	61	0	1	0	0	0	0	0	0	0	7653	870	30	4		4	IGFBP6	12	53494814	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	254656	53494814	80357081	4854	73099											
PFDN5	5204	broad.mit.edu	37	chr12	53693169	53693169	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagggacaccctttgggCgtggcttcctggtgatggga	17	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53693169	T	T	53693169	1	4	61	0	1	0	0	0	0	0	0	0	11853	783	27	4		4	PFDN5	12	53693169	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	198355	53693169	80158726	4855	73100											
SP7	121340	broad.mit.edu	37	chr12	53722395	53722395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctcccagccgctctagCtcctggcaattagggcagtc	11	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53722395	A	A	53722395	3	1	61	1	0	0	0	0	1	0	0	0	15083	796	28	3	468	3	SP7	12	53722395	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	29226	53722395	80129500	4856	73101											
SP1	6667	broad.mit.edu	37	chr12	53800476	53800476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagatgcccaaccccaaGccggtcggaggacccggcgg	14	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53800476	T	T	53800476	3	4	61	1	0	0	0	0	1	0	0	0	15073	971	34	3	1797	3	SP1	12	53800476	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	78081	53800476	80051419	4857	73102											
HOXC4	3221	broad.mit.edu	37	chr12	54428018	54428018	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggacgggggaacgctgcaAgctattcaccccttcctggc	14	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54428018	C	C	54428018	1	2	61	0	1	0	0	0	0	0	0	0	7380	87	3	5		5	HOXC4	12	54428018	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	627542	54428018	79423877	4858	73103											
SMUG1	23583	broad.mit.edu	37	chr12	54575278	54575278	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcatagagaggtttattaaTttgtcaatcaaaaagttcca	8	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54575278	C	C	54575278	1	2	61	0	1	0	0	0	0	0	0	0	14932	1508	52	5		5	SMUG1	12	54575278	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	147260	54575278	79276617	4859	73104											
HNRNPA1	3178	broad.mit.edu	37	chr12	54676198	54676198	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaaataccatactgtgAatggccacaactgtgaagtt	8	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54676198	G	G	54676198	3	3	61	1	0	0	0	0	1	0	0	0	7324	246	9	5	529	5	HNRNPA1	12	54676198	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	100920	54676198	79175697	4860	73105											
NFE2	4778	broad.mit.edu	37	chr12	54687297	54687297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaagttgccacaaatcaCgggaagcttcctgcaaagtt	8	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54687297	A	A	54687297	1	1	61	0	1	0	0	0	0	0	0	0	10461	551	19	3		3	NFE2	12	54687297	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11099	54687297	79164598	4861	73106											
ITGA5	3678	broad.mit.edu	37	chr12	54793518	54793518	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgagctcacagcgcagccTgaaacactcagcctccgggc	10	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54793518	A	A	54793518	3	1	61	1	0	0	0	0	1	0	0	0	7949	1579	55	5	413	5	ITGA5	12	54793518	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	106221	54793518	79058377	4862	73107											
ITGA5	3678	broad.mit.edu	37	chr12	54805517	54805517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagaggtcacgtggccgGggttccagcaggctccaccc	15	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54805517	T	T	54805517	1	4	61	0	1	0	0	0	0	0	0	0	7949	1247	43	2		2	ITGA5	12	54805517	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11999	54805517	79046378	4863	73108											
NCKAP1L	3071	broad.mit.edu	37	chr12	54912788	54912788	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcctgttaaagattctcatCctcagattcttcctccccca	3	15	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54912788	T	T	54912788	1	4	61	0	1	0	0	0	0	0	0	0	10317	870	30	4		4	NCKAP1L	12	54912788	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	107271	54912788	78939107	4864	73109											
PDE1B	5153	broad.mit.edu	37	chr12	54943610	54943610	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcggctggggctgaagctgAgccgaggtgctgtctcctcc	15	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54943610	C	C	54943610	1	2	61	0	1	0	0	0	0	0	0	0	11728	319	11	5		5	PDE1B	12	54943610	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	30822	54943610	78908285	4865	73110											
PDE1B	5153	broad.mit.edu	37	chr12	54967079	54967079	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggggccaagaggaggtGgggaggttgccggagtccct	21	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54967079	A	A	54967079	1	1	61	0	1	0	0	0	0	0	0	0	11728	1363	47	4		4	PDE1B	12	54967079	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23469	54967079	78884816	4866	73111											
PDE1B	5153	broad.mit.edu	37	chr12	54969156	54969156	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaccccattatcctaaaAgcctaacaatagttgcattt	3	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54969156	C	C	54969156	1	2	61	0	1	0	0	0	0	0	0	0	11728	87	3	5		5	PDE1B	12	54969156	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2077	54969156	78882739	4867	73112											
PPP1R1A	5502	broad.mit.edu	37	chr12	54974907	54974907	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggagggaactgcttctccTcactgcacccataccccagt	10	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54974907	G	G	54974907	1	3	61	0	1	0	0	0	0	0	0	0	12468	1566	54	5		5	PPP1R1A	12	54974907	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5751	54974907	78876988	4868	73113											
PPP1R1A	5502	broad.mit.edu	37	chr12	54976577	54976577	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggagacattgccaaagtGgactgtgaagggcacagagc	15	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54976577	A	A	54976577	2	1	61	1	0	0	0	0	0	0	0	1	12468	1335	47	4		4	PPP1R1A	12	54976577	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1670	54976577	78875318	4869	73114											
LACRT	90070	broad.mit.edu	37	chr12	55031438	55031438	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcgcatctgtacctggaCtgctgatccataacaactgt	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55031438	A	A	55031438	1	1	61	0	1	0	0	0	0	0	0	0	8668	580	20	3		3	LACRT	12	55031438	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	54861	55031438	78820457	4870	73115											
DCD	117159	broad.mit.edu	37	chr12	55038903	55038903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcagtttcagatctcatgCaaggggtggagactgaggct	15	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55038903	T	T	55038903	1	4	61	0	1	0	0	0	0	0	0	0	4316	725	25	4		4	DCD	12	55038903	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7465	55038903	78812992	4871	73116											
KIAA0748	9840	broad.mit.edu	37	chr12	55359857	55359857	+	Frame_Shift_Del	DEL	C	-	-													cttgaactagtcttgttggtCcccccagtcatgctgctgga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55359857	-	-	55359857	7	5	61	1	0	1	0	1	0	0	0	0	8260	842	30	0	1155	0	KIAA0748	12	55359857	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	320954	55359857	78492038	4872	73117											
KIAA0748	9840	broad.mit.edu	37	chr12	55359894	55359894	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaagccaaactacagccaAgatcaagtagctggcaaggc	11	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55359894	C	C	55359894	3	2	61	1	0	0	0	0	1	0	0	0	8260	72	3	5	1192	5	KIAA0748	12	55359894	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	37	55359894	78492001	4873	73118											
NEUROD4	58158	broad.mit.edu	37	chr12	55420142	55420142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacttggacaagataattaCatataaaaaactttagtttc	5	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55420142	A	A	55420142	1	1	61	0	1	0	0	0	0	0	0	0	10445	493	17	3		3	NEUROD4	12	55420142	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60248	55420142	78431753	4874	73119											
OR9K2	441639	broad.mit.edu	37	chr12	55524038	55524038	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctactctgttcaaatgtcCacacgtctgtgtactcagtt	6	12	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55524038	A	A	55524038	2	1	61	1	0	0	0	0	0	0	0	1	11348	581	21	2		2	OR9K2	12	55524038	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	103896	55524038	78327857	4875	73120											
OR6C1	390321	broad.mit.edu	37	chr12	55715252	55715252	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacccctttatttacagccTaagaaatcagcaagtcaagc	6	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55715252	A	A	55715252	3	1	61	1	0	0	0	0	1	0	0	0	11284	1522	53	5	871	5	OR6C1	12	55715252	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	191214	55715252	78136643	4876	73121											
OR6C3	254786	broad.mit.edu	37	chr12	55725587	55725587	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttatcacgtatatattaAgtgttactggaaacctgact	6	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55725587	C	C	55725587	3	2	61	1	0	0	0	0	1	0	0	0	11286	72	3	5	105	5	OR6C3	12	55725587	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10335	55725587	78126308	4877	73122											
OR6C3	254786	broad.mit.edu	37	chr12	55725638	55725638	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacctttgtggactcccatCtgcagacacctatgtatttc	6	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55725638	T	T	55725638	2	4	61	1	0	0	0	0	0	0	0	1	11286	912	32	4		4	OR6C3	12	55725638	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	51	55725638	78126257	4878	73123											
OR6C75	390323	broad.mit.edu	37	chr12	55759174	55759174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaccatttcttataatGggtgtgtggctcagctattt	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55759174	T	T	55759174	3	4	61	1	0	0	0	0	1	0	0	0	11293	1348	47	2	282	2	OR6C75	12	55759174	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33536	55759174	78092721	4879	73124											
OR6C76	390326	broad.mit.edu	37	chr12	55820397	55820397	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctatgtcctatgattgctaTgtggctatatgtaagcctct	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55820397	C	C	55820397	2	2	61	1	0	0	0	0	0	0	0	1	11294	1471	51	5		5	OR6C76	12	55820397	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	61223	55820397	78031498	4880	73125											
OR6C68	403284	broad.mit.edu	37	chr12	55886799	55886799	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcactcttgtatgtgtagTtctgtcctacacatatatca	5	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55886799	G	G	55886799	3	3	61	1	0	0	0	0	1	0	0	0	11290	1725	60	5	655	5	OR6C68	12	55886799	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	66402	55886799	77965096	4881	73126											
OR6C68	403284	broad.mit.edu	37	chr12	55887043	55887043	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatactcttaggaatgagcaAgttaaacaagcctttcatga	7	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55887043	C	C	55887043	3	2	61	1	0	0	0	0	1	0	0	0	11290	69	3	5	899	5	OR6C68	12	55887043	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	244	55887043	77964852	4882	73127											
OR10P1	121130	broad.mit.edu	37	chr12	56030657	56030657	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctcttcttggctgtgcctCagcttctggcctggagtgat	11	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56030657	T	T	56030657	1	4	61	0	1	0	0	0	0	0	0	0	11009	841	29	4		4	OR10P1	12	56030657	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	143614	56030657	77821238	4883	73128											
MMP19	4327	broad.mit.edu	37	chr12	56233400	56233401	+	Missense_Mutation	DNP	GG	AT	AT													gtgcccaagccccagagcatGgcccacttcatgggctgcaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	56233401	AT	AT	56233400	3	1	61	1	0	0	0	0	1	0	0	0	9750	1348	47	4	900	4	MMP19	12	56233400	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	202743	56233400	77618495	4884	73129											
DGKA	1606	broad.mit.edu	37	chr12	56333546	56333546	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtgcttcagatggtgcAtgcacatactataaaatgca	8	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56333546	G	G	56333546	1	3	61	0	1	0	0	0	0	0	0	0	4505	232	8	5		5	DGKA	12	56333546	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	100146	56333546	77518349	4885	73130											
SUOX	6821	broad.mit.edu	37	chr12	56398063	56398063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacgctgggctggggcacGgctctgtgatgtgttagccc	16	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56398063	T	T	56398063	3	4	61	1	0	0	0	0	1	0	0	0	15513	1116	39	1	900	1	SUOX	12	56398063	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	64517	56398063	77453832	4886	73131											
ZC3H10	84872	broad.mit.edu	37	chr12	56514389	56514389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacggtaccgggagcagcGgtggaggccctggaggtggt	19	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56514389	T	T	56514389	3	4	61	1	0	0	0	0	1	0	0	0	17685	1116	39	1	45	1	ZC3H10	12	56514389	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	116326	56514389	77337506	4887	73132											
ESYT1	23344	broad.mit.edu	37	chr12	56531639	56531639	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcgtcacatcagttccaggCcaagagctagaggttgaagt	11	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56531639	G	G	56531639	2	3	61	1	0	0	0	0	0	0	0	1	5306	726	26	4		4	ESYT1	12	56531639	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17250	56531639	77320256	4888	73133											
PAN2	9924	broad.mit.edu	37	chr12	56717783	56717783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccctgatattacaggacAttttggggagccttcccaac	8	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56717783	G	G	56717783	1	3	61	0	1	0	0	0	0	0	0	0	11508	232	8	5		5	PAN2	12	56717783	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	186144	56717783	77134112	4889	73134											
PTGES3	10728	broad.mit.edu	37	chr12	57066595	57066595	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcacttcctccgagacaacTgtataaaataataaagaaag	5	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57066595	A	A	57066595	5	1	61	1	0	0	0	0	0	0	1	0	12854	1594	55	5	391	5	PTGES3	12	57066595	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	348812	57066595	76785300	4890	73135											
MYO1A	4640	broad.mit.edu	37	chr12	57423917	57423917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggggtgacaatcctgccaGgtgattctaaggcacgctca	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57423917	A	A	57423917	1	1	61	0	1	0	0	0	0	0	0	0	10162	1015	35	4		4	MYO1A	12	57423917	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	357322	57423917	76427978	4891	73136											
LRP1	4035	broad.mit.edu	37	chr12	57581012	57581012	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgcaggctgccctctgGgccctcctgacaaatcgctg	11	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57581012	C	C	57581012	1	2	61	0	1	0	0	0	0	0	0	0	9038	1247	43	4		4	LRP1	12	57581012	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	157095	57581012	76270883	4892	73137											
INHBE	83729	broad.mit.edu	37	chr12	57849344	57849344	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctccctgatgtccagctcTggctggtgctgctgtgggca	15	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57849344	C	C	57849344	3	2	61	1	0	0	0	0	1	0	0	0	7814	1580	55	5	27	5	INHBE	12	57849344	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	268332	57849344	76002551	4893	73138											
MARS	4141	broad.mit.edu	37	chr12	57881753	57881753	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaatagtctactttccgGtagcggtgccagggcagtgg	15	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57881753	T	T	57881753	1	4	61	0	1	0	0	0	0	0	0	0	9408	1276	44	3		3	MARS	12	57881753	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32409	57881753	75970142	4894	73139											
MARS	4141	broad.mit.edu	37	chr12	57894022	57894022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttgtcactgagtttgGgtccctggttggagtggcag	14	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57894022	T	T	57894022	1	4	61	0	1	0	0	0	0	0	0	0	9408	1247	43	2		2	MARS	12	57894022	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12269	57894022	75957873	4895	73140											
KIF5A	3798	broad.mit.edu	37	chr12	57963210	57963210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcagggtccccagagGgatccctggtacccagcttc	13	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57963210	T	T	57963210	1	4	61	0	1	0	0	0	0	0	0	0	8375	1247	43	2		2	KIF5A	12	57963210	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69188	57963210	75888685	4896	73141											
GEFT	115557	broad.mit.edu	37	chr12	58010136	58010136	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggggcggccaagagggcCtggagtggggagccctggaa	20	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58010136	G	G	58010136	3	3	61	1	0	0	0	0	1	0	0	0	6392	681	24	4	1766	4	GEFT	12	58010136	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	46926	58010136	75841759	4897	73142											
SLC26A10	65012	broad.mit.edu	37	chr12	58018523	58018523	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagggtgtagtgcctggcaCttggacaggctgaggggaca	17	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58018523	G	G	58018523	1	3	61	0	1	0	0	0	0	0	0	0	14629	580	20	4		4	SLC26A10	12	58018523	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8387	58018523	75833372	4898	73143											
SLC26A10	65012	broad.mit.edu	37	chr12	58018915	58018915	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttacttataggagacttcaAagccagatggcccaatggtt	9	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58018915	T	T	58018915	4	4	61	1	0	0	0	0	0	1	0	0	14629	15	1	5	1396	5	SLC26A10	12	58018915	Nonsense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	392	58018915	75832980	4899	73144											
AGAP2	116986	broad.mit.edu	37	chr12	58126860	58126860	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgggccctcaggctgggtCcactggggatggggtgtgag	19	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58126860	A	A	58126860	1	1	61	0	1	0	0	0	0	0	0	0	368	870	30	3		3	AGAP2	12	58126860	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	107945	58126860	75725035	4900	73145											
FAM19A2	338811	broad.mit.edu	37	chr12	62273285	62273285	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggccagcggtattggaggGatcactgctgtcatggtcaa	16	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62273285	T	T	62273285	1	4	61	0	1	0	0	0	0	0	0	0	5579	1189	41	3		3	FAM19A2	12	62273285	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4146425	62273285	71578610	4901	73146											
FAM19A2	338811	broad.mit.edu	37	chr12	62522432	62522433	+	Intron	DNP	GG	AT	AT													tctctttccatagctgtgcaGgatggcaaggactattcata							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	62522433	AT	AT	62522432	1	1	61	0	1	0	0	0	0	0	0	0	5579	1015	35	4		4	FAM19A2	12	62522432	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	249147	62522432	71329463	4902	73147											
SRGAP1	57522	broad.mit.edu	37	chr12	64378088	64378088	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacttatgggcatcagtttAtcattttaaactagtgtaat	6	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64378088	T	T	64378088	1	4	61	0	1	0	0	0	0	0	0	0	15263	464	16	5		5	SRGAP1	12	64378088	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1855656	64378088	69473807	4903	73148											
SRGAP1	57522	broad.mit.edu	37	chr12	64480761	64480761	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctttcagtttacttacttTaaatttttttcctgcaggtc	4	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64480761	C	C	64480761	1	2	61	0	1	0	0	0	0	0	0	0	15263	1769	61	5		5	SRGAP1	12	64480761	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	102673	64480761	69371134	4904	73149											
SRGAP1	57522	broad.mit.edu	37	chr12	64536284	64536284	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcgacgtagcacgagctcCtccagtgacacaatgagtac	9	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64536284	T	T	64536284	2	4	61	1	0	0	0	0	0	0	0	1	15263	668	24	4		4	SRGAP1	12	64536284	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	55523	64536284	69315611	4905	73150											
MSRB3	253827	broad.mit.edu	37	chr12	65744216	65744216	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaccagctaacatcataatGacaggatcaaattcacacgt	5	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65744216	T	T	65744216	1	4	61	0	1	0	0	0	0	0	0	0	9983	1305	45	3		3	MSRB3	12	65744216	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1207932	65744216	68107679	4906	73151											
MSRB3	253827	broad.mit.edu	37	chr12	65821896	65821896	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtcttcctctctggggttCcctgtgaagaataatggttt	11	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65821896	A	A	65821896	1	1	61	0	1	0	0	0	0	0	0	0	9983	870	30	3		3	MSRB3	12	65821896	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	77680	65821896	68029999	4907	73152											
GRIP1	23426	broad.mit.edu	37	chr12	66800025	66800025	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttggtgacagatgggcagTtcgaaaaatcagttttaact	10	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66800025	A	A	66800025	1	1	61	0	1	0	0	0	0	0	0	0	6853	1740	60	5		5	GRIP1	12	66800025	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	978129	66800025	67051870	4908	73153											
IFNG	3458	broad.mit.edu	37	chr12	68553297	68553297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacaaaatatttcttaagGttttctgcttcttttacata	3	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68553297	T	T	68553297	3	4	61	1	0	0	0	0	1	0	0	0	7618	1252	44	3	417	3	IFNG	12	68553297	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1753272	68553297	65298598	4909	73154											
CPM	1368	broad.mit.edu	37	chr12	69349285	69349285	+	Intron	DEL	G	-	-													tggtgagtgtgtgtgggggtGgggggggcatgtttcagccc					rs66949427		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69349285	-	-	69349285	6	5	61	0	1	1	0	1	0	0	0	0	3840	1363	47	0		0	CPM	12	69349285	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	795988	69349285	64502610	4910	73155											
CNOT2	4848	broad.mit.edu	37	chr12	70723271	70723271	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaatcgcagcttatcacaaGgcactcagttaccgagccac	7	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70723271	A	A	70723271	3	1	61	1	0	0	0	0	1	0	0	0	3651	1000	35	4	321	4	CNOT2	12	70723271	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1373986	70723271	63128624	4911	73156											
PTPRB	5787	broad.mit.edu	37	chr12	70931886	70931887	+	Intron	INS	-	A	A													gtggcatctccagtgtagccINSacccaccaaagcctcatcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70931887	A	A	70931886	6	5	61	0	1	1	1	0	0	0	0	0	12904	609	21	0		0	PTPRB	12	70931886	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	208615	70931886	62920009	4912	73157											
PTPRR	5801	broad.mit.edu	37	chr12	71105971	71105971	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaagtatcatcagtcttcaGgtggaaggaaggaaggcgcc	13	7	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71105971	C	C	71105971	1	2	61	0	1	0	0	0	0	0	0	0	12918	1015	35	4		4	PTPRR	12	71105971	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	174085	71105971	62745924	4913	73158											
TRHDE	29953	broad.mit.edu	37	chr12	72674336	72674336	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagaggagcctggtcaccaGaaaaaaaagaaggaaaagaa	12	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72674336	A	A	72674336	1	1	61	0	1	0	0	0	0	0	0	0	16603	957	33	4		4	TRHDE	12	72674336	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1568365	72674336	61177559	4914	73159											
TRHDE	29953	broad.mit.edu	37	chr12	72704945	72704945	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttatgtctctttgtggtCagtcccttaccccagctcca	6	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72704945	A	A	72704945	1	1	61	0	1	0	0	0	0	0	0	0	16603	841	29	3		3	TRHDE	12	72704945	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30609	72704945	61146950	4915	73160											
TRHDE	29953	broad.mit.edu	37	chr12	72774459	72774459	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgggtggatgacagatcatGgaccgccagcaggctgcagc	15	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72774459	C	C	72774459	1	2	61	0	1	0	0	0	0	0	0	0	16603	1363	47	4		4	TRHDE	12	72774459	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69514	72774459	61077436	4916	73161											
TRHDE	29953	broad.mit.edu	37	chr12	72774742	72774742	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttaagcagaggcattgtaGaatctgattaatgttgtaaa	9	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72774742	T	T	72774742	1	4	61	0	1	0	0	0	0	0	0	0	16603	957	33	3		3	TRHDE	12	72774742	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	283	72774742	61077153	4917	73162											
TRHDE	29953	broad.mit.edu	37	chr12	72947332	72947332	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccattccatgaactgcccatCaggggtcttgtcatctcagt	8	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72947332	A	A	72947332	1	1	61	0	1	0	0	0	0	0	0	0	16603	841	29	3		3	TRHDE	12	72947332	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	172590	72947332	60904563	4918	73163											
CAPS2	84698	broad.mit.edu	37	chr12	75784752	75784752	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccctcctccttacccCctcctccctcctttgttttt	1	22	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75784752	A	A	75784752	1	1	61	0	1	0	0	0	0	0	0	0	2664	638	22	2		2	CAPS2	12	75784752	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2837420	75784752	58067143	4919	73164											
BBS10	79738	broad.mit.edu	37	chr12	76740920	76740920	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaattgagatgtctgaaacTgtgcttctgaatttagaata	8	4	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76740920	A	A	76740920	3	1	61	1	0	0	0	0	1	0	0	0	1341	1580	55	5	1330	5	BBS10	12	76740920	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	956168	76740920	57110975	4920	73165											
E2F7	144455	broad.mit.edu	37	chr12	77421834	77421834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcagcagggagttggcCattcacatgaatgtctttga	11	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77421834	A	A	77421834	3	1	61	1	0	0	0	0	1	0	0	0	4912	594	21	2	778	2	E2F7	12	77421834	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	680914	77421834	56430061	4921	73166											
NAV3	89795	broad.mit.edu	37	chr12	78362554	78362554	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtttttaacaaattattGtccatgagtttgaaaaacgt	6	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78362554	A	A	78362554	1	1	61	0	1	0	0	0	0	0	0	0	10279	1392	48	4		4	NAV3	12	78362554	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	940720	78362554	55489341	4922	73167											
NAV3	89795	broad.mit.edu	37	chr12	78400870	78400870	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacaacagcagctaagaagGaaagcttaattccgtcttcc	8	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78400870	A	A	78400870	3	1	61	1	0	0	0	0	1	0	0	0	10279	1175	41	4	1582	4	NAV3	12	78400870	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38316	78400870	55451025	4923	73168											
NAV3	89795	broad.mit.edu	37	chr12	78513494	78513494	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcaagtctgctggggCcaccacctcgaaactgagag	12	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78513494	T	T	78513494	3	4	61	1	0	0	0	0	1	0	0	0	10279	739	26	4	3576	4	NAV3	12	78513494	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	112624	78513494	55338401	4924	73169											
NAV3	89795	broad.mit.edu	37	chr12	78574592	78574592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactctgataaaagacttgGtgctattttctcaatcaaac	5	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78574592	T	T	78574592	1	4	61	0	1	0	0	0	0	0	0	0	10279	1276	44	3		3	NAV3	12	78574592	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	61098	78574592	55277303	4925	73170											
PPFIA2	8499	broad.mit.edu	37	chr12	81789700	81789700	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagcatcagccctctggccCctcttccagtctaatacatt	5	15	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81789700	G	G	81789700	1	3	61	0	1	0	0	0	0	0	0	0	12406	638	22	4		4	PPFIA2	12	81789700	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3215108	81789700	52062195	4926	73171											
PPFIA2	8499	broad.mit.edu	37	chr12	81953859	81953859	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggtttgaattgacgtataCctgtgatcctgaataataca	9	6	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81953859	G	G	81953859	1	3	61	0	1	0	0	0	0	0	0	0	12406	522	18	4		4	PPFIA2	12	81953859	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	164159	81953859	51898036	4927	73172											
PPFIA2	8499	broad.mit.edu	37	chr12	82147948	82147948	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccactgctttgggaccccCtttggctcattggggtgtcc	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82147948	T	T	82147948	3	4	61	1	0	0	0	0	1	0	0	0	12406	681	24	4	3840	4	PPFIA2	12	82147948	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	194089	82147948	51703947	4928	73173											
C12orf26	84190	broad.mit.edu	37	chr12	82824651	82824651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattttatttaaataatccGtatttttcccccatctgcag	4	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82824651	T	T	82824651	1	4	61	0	1	0	0	0	0	0	0	0	1692	1160	40	3		3	C12orf26	12	82824651	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	676703	82824651	51027244	4929	73174											
SLC6A15	55117	broad.mit.edu	37	chr12	85266819	85266819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaataaaagtataaataaCaagataaaaactaagaaaaa	3	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85266819	A	A	85266819	1	1	61	0	1	0	0	0	0	0	0	0	14792	493	17	3		3	SLC6A15	12	85266819	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2442168	85266819	48585076	4930	73175											
LRRIQ1	84125	broad.mit.edu	37	chr12	85638758	85638758	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaacctaatgccaacaagCattctttttcagataggggg	10	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85638758	T	T	85638758	1	4	61	0	1	0	0	0	0	0	0	0	9116	725	25	4		4	LRRIQ1	12	85638758	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	371939	85638758	48213137	4931	73176											
MGAT4C	25834	broad.mit.edu	37	chr12	87199232	87199232	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagctcccatttatgagtgAaacatgtggtatttggtttt	9	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87199232	T	T	87199232	1	4	61	0	1	0	0	0	0	0	0	0	9640	261	9	5		5	MGAT4C	12	87199232	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1560474	87199232	46652663	4932	73177											
C12orf50	160419	broad.mit.edu	37	chr12	88390524	88390524	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatactgttctcatggataGattacttttttatatttcta	4	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88390524	C	C	88390524	1	2	61	0	1	0	0	0	0	0	0	0	1708	957	33	4		4	C12orf50	12	88390524	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1191292	88390524	45461371	4933	73178											
EPYC	1833	broad.mit.edu	37	chr12	91372093	91372093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaacttctcagtcactctGtgtggcagtgacacaaattt	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91372093	T	T	91372093	1	4	61	0	1	0	0	0	0	0	0	0	5243	1392	48	3		3	EPYC	12	91372093	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2981569	91372093	42479802	4934	73179											
CRADD	8738	broad.mit.edu	37	chr12	94157148	94157149	+	Intron	INS	-	A	A													aaactaacttcctctctattINSaaaaaaaaatctgctcaaag					rs145672453	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94157149	A	A	94157148	6	5	61	0	1	1	1	0	0	0	0	0	3877	1769	61	0		0	CRADD	12	94157148	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	2785055	94157148	39694747	4935	73180											
CCDC38	120935	broad.mit.edu	37	chr12	96282315	96282315	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaggtgaggccatgccGttggtgatggtggagtgaaa	17	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96282315	C	C	96282315	1	2	61	0	1	0	0	0	0	0	0	0	2837	1160	40	4		4	CCDC38	12	96282315	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2125167	96282315	37569580	4936	73181											
LTA4H	4048	broad.mit.edu	37	chr12	96408740	96408740	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctgtcagatcaaccacaAgtttggtgaaaggatgtgtc	10	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96408740	C	C	96408740	3	2	61	1	0	0	0	0	1	0	0	0	9156	72	3	5	770	5	LTA4H	12	96408740	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	126425	96408740	37443155	4937	73182											
C12orf63	374467	broad.mit.edu	37	chr12	97112455	97112455	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agccagaggtggagtttactCctcatgagaaaagtagatgt	12	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97112455	G	G	97112455	1	3	61	0	1	0	0	0	0	0	0	0	1719	870	30	4		4	C12orf63	12	97112455	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	703715	97112455	36739440	4938	73183											
NEDD1	121441	broad.mit.edu	37	chr12	97338413	97338413	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattatttattttaaatatAaagttagcaaagttggtcac	5	4	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97338413	G	G	97338413	1	3	61	0	1	0	0	0	0	0	0	0	10404	377	13	5		5	NEDD1	12	97338413	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	225958	97338413	36513482	4939	73184											
ANKS1B	56899	broad.mit.edu	37	chr12	99166695	99166695	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctagcaaacaaatacacTtggtatgtatcttaataccg	6	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99166695	G	G	99166695	1	3	61	0	1	0	0	0	0	0	0	0	689	1624	56	5		5	ANKS1B	12	99166695	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1828282	99166695	34685200	4940	73185											
ANKS1B	56899	broad.mit.edu	37	chr12	99194797	99194797	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctttgtaatcacacgacTggaagataagcttttctggg	10	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99194797	A	A	99194797	3	1	61	1	0	0	0	0	1	0	0	0	689	1580	55	5	716	5	ANKS1B	12	99194797	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	28102	99194797	34657098	4941	73186											
ANKS1B	56899	broad.mit.edu	37	chr12	100169283	100169283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttcacaactgtacataCaagtctagtatagattccag	5	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100169283	A	A	100169283	1	1	61	0	1	0	0	0	0	0	0	0	689	493	17	3		3	ANKS1B	12	100169283	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	974486	100169283	33682612	4942	73187											
ANKS1B	56899	broad.mit.edu	37	chr12	100200223	100200223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccagcagcacctgcaCgactgctttgtggccattgc	10	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100200223	A	A	100200223	3	1	61	1	0	0	0	0	1	0	0	0	689	536	19	3	3498	3	ANKS1B	12	100200223	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30940	100200223	33651672	4943	73188											
SLC17A8	246213	broad.mit.edu	37	chr12	100796091	100796091	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaaatgagaccatataAcccagccttttcttttttaa	5	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100796091	C	C	100796091	1	2	61	0	1	0	0	0	0	0	0	0	14536	58	2	5		5	SLC17A8	12	100796091	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	595868	100796091	33055804	4944	73189											
SLC17A8	246213	broad.mit.edu	37	chr12	100811813	100811813	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcttcactgtaggttttaAtgtcaaccacctggacattg	9	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100811813	C	C	100811813	3	2	61	1	0	0	0	0	1	0	0	0	14536	101	4	5	1346	5	SLC17A8	12	100811813	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	15722	100811813	33040082	4945	73190											
MYBPC1	4604	broad.mit.edu	37	chr12	102045178	102045178	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gttcacaagggaaggtaagcGagccaggtgacccgcaagtg	15	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102045178	C	C	102045178	1	2	61	0	1	0	0	0	0	0	0	0	10105	1073	37	4		4	MYBPC1	12	102045178	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1233365	102045178	31806717	4946	73191											
MYBPC1	4604	broad.mit.edu	37	chr12	102078204	102078204	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtataatatcatctaaggTaagctttcatatggttttgg	8	4	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102078204	A	A	102078204	5	1	61	1	0	0	0	0	0	0	1	0	10105	1652	57	5		5	MYBPC1	12	102078204	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	33026	102078204	31773691	4947	73192											
IGF1	3479	broad.mit.edu	37	chr12	102802887	102802887	+	Intron	DEL	A	-	-													gtaaaatgaaagtgtggggtAagagcacctacatcacagtg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102802887	-	-	102802887	6	5	61	0	1	1	0	1	0	0	0	0	7640	377	13	0		0	IGF1	12	102802887	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	724683	102802887	31049008	4948	73193											
IGF1	3479	broad.mit.edu	37	chr12	102809307	102809307	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttaactagaaagtcttttTgttcttccttccctttcctt	3	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102809307	C	C	102809307	1	2	61	0	1	0	0	0	0	0	0	0	7640	1827	63	5		5	IGF1	12	102809307	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6420	102809307	31042588	4949	73194											
C12orf42	374470	broad.mit.edu	37	chr12	103699929	103699929	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtgctcctctggctctctCctcagtttctcctctggcag	10	15	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103699929	A	A	103699929	4	1	61	1	0	0	0	0	0	1	0	0	1701	864	30	3	636	3	C12orf42	12	103699929	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	890622	103699929	30151966	4950	73195											
STAB2	55576	broad.mit.edu	37	chr12	104012345	104012345	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgagctgtggcacaggaaAgcttatggcaaaggtcttat	12	6	1	1	rs144540181	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104012345	T	T	104012345	1	4	61	0	1	0	0	0	0	0	0	0	15356	87	3	5		5	STAB2	12	104012345	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	312416	104012345	29839550	4951	73196											
STAB2	55576	broad.mit.edu	37	chr12	104142701	104142701	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgaagccctagttccacaGaaggtggtaagttgagccct	11	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104142701	A	A	104142701	1	1	61	0	1	0	0	0	0	0	0	0	15356	957	33	4		4	STAB2	12	104142701	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	130356	104142701	29709194	4952	73197											
CHST11	50515	broad.mit.edu	37	chr12	104900457	104900457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttgggattctggtgtcCgacagagatggaaacttcgc	12	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104900457	A	A	104900457	1	1	61	0	1	0	0	0	0	0	0	0	3430	667	23	1		1	CHST11	12	104900457	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	757756	104900457	28951438	4953	73198											
CHST11	50515	broad.mit.edu	37	chr12	104918395	104918395	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctactcttctacccatccaCtcatccatccgtccgtccat	2	20	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104918395	G	G	104918395	1	3	61	0	1	0	0	0	0	0	0	0	3430	580	20	4		4	CHST11	12	104918395	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17938	104918395	28933500	4954	73199											
CHST11	50515	broad.mit.edu	37	chr12	105151495	105151495	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttccagaacatcagctcaGagcaccaaacgcagctgtac	7	14	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105151495	T	T	105151495	4	4	61	1	0	0	0	0	0	1	0	0	3430	943	33	3	983	3	CHST11	12	105151495	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	233100	105151495	28700400	4955	73200											
KIAA1033	23325	broad.mit.edu	37	chr12	105516089	105516089	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcagaattatagtaggacActtttataatatactgttga	7	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105516089	G	G	105516089	1	3	61	0	1	0	0	0	0	0	0	0	8276	174	6	5		5	KIAA1033	12	105516089	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	364594	105516089	28335806	4956	73201											
NUAK1	9891	broad.mit.edu	37	chr12	106500286	106500286	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttaattttgtccttacgAatggattttatagcaaccta	5	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106500286	T	T	106500286	2	4	61	1	0	0	0	0	0	0	0	1	10807	242	9	5		5	NUAK1	12	106500286	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	984197	106500286	27351609	4957	73202											
RFX4	5992	broad.mit.edu	37	chr12	107080945	107080946	+	Intron	INS	-	TC	TC													tctctctctctctgtctctaINStctctctctctctctcacac					rs57545359		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	107080946	TC	TC	107080945	6	5	61	0	1	1	1	0	0	0	0	0	13373	464	16	0		0	RFX4	12	107080945	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	580659	107080945	26770950	4958	73203											
RFX4	5992	broad.mit.edu	37	chr12	107083232	107083232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcctgctaggtgccagGcctggcatctggaagccctt	13	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107083232	T	T	107083232	1	4	61	0	1	0	0	0	0	0	0	0	13373	1218	42	3		3	RFX4	12	107083232	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2287	107083232	26768663	4959	73204											
RFX4	5992	broad.mit.edu	37	chr12	107106552	107106552	+	Intron	DEL	T	-	-													gattcaggaaagaaggtgaaTattggcctaacaaagaaaca					rs59951084		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107106552	-	-	107106552	6	5	61	0	1	1	0	1	0	0	0	0	13373	1421	49	0		0	RFX4	12	107106552	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	23320	107106552	26745343	4960	73205											
RFX4	5992	broad.mit.edu	37	chr12	107144273	107144273	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaaaaaaaaaaaaaaaacaGatgaaagaaagaaaaatggg	7	2	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107144273	T	T	107144273	1	4	61	0	1	0	0	0	0	0	0	0	13373	957	33	3		3	RFX4	12	107144273	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37721	107144273	26707622	4961	73206											
BTBD11	121551	broad.mit.edu	37	chr12	107713182	107713182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcctgagcctgcgcttcgcCaagtgcaccaagtacgagat	11	14	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107713182	A	A	107713182	2	1	61	1	0	0	0	0	0	0	0	1	1548	581	21	2		2	BTBD11	12	107713182	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	568909	107713182	26138713	4962	73207											
BTBD11	121551	broad.mit.edu	37	chr12	107886968	107886968	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactggggggcctccccactCagggtccttgcagggaagca	14	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107886968	A	A	107886968	1	1	61	0	1	0	0	0	0	0	0	0	1548	841	29	3		3	BTBD11	12	107886968	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	173786	107886968	25964927	4963	73208											
BTBD11	121551	broad.mit.edu	37	chr12	108004204	108004204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctggcaagacagagacaGccggtgaatcccctctgcag	11	15	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108004204	T	T	108004204	1	4	61	0	1	0	0	0	0	0	0	0	1548	986	34	3		3	BTBD11	12	108004204	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	117236	108004204	25847691	4964	73209											
BTBD11	121551	broad.mit.edu	37	chr12	108011113	108011113	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagtttgctgttggagcgtGgtgccgatcccctgatagga	14	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108011113	A	A	108011113	3	1	61	1	0	0	0	0	1	0	0	0	1548	1348	47	4	2270	4	BTBD11	12	108011113	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6909	108011113	25840782	4965	73210											
CMKLR1	1240	broad.mit.edu	37	chr12	108686013	108686013	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgctgcagtttgcacacgaTggtgaggtagcaagctgtga	15	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108686013	C	C	108686013	3	2	61	1	0	0	0	0	1	0	0	0	3611	1464	51	5	398	5	CMKLR1	12	108686013	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	674900	108686013	25165882	4966	73211											
MYO1H	283446	broad.mit.edu	37	chr12	109841715	109841715	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggactagcttttgcatctTcagagaggaatagacatgct	10	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109841715	A	A	109841715	1	1	61	0	1	0	0	0	0	0	0	0	10169	1798	62	5		5	MYO1H	12	109841715	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1155702	109841715	24010180	4967	73212											
MVK	4598	broad.mit.edu	37	chr12	110034265	110034265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtggaggccacgaagcaGgccctgaccagctgtggctt	15	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110034265	T	T	110034265	3	4	61	1	0	0	0	0	1	0	0	0	10089	991	35	2	1112	2	MVK	12	110034265	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	192550	110034265	23817630	4968	73213											
IFT81	28981	broad.mit.edu	37	chr12	110655869	110655869	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttcgggaaaaacaaaaAgttatacgagaaagtcatgg	9	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110655869	C	C	110655869	3	2	61	1	0	0	0	0	1	0	0	0	7635	69	3	5	2051	5	IFT81	12	110655869	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	621604	110655869	23196026	4969	73214											
HVCN1	84329	broad.mit.edu	37	chr12	111099189	111099189	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagtcgtctcccacgaccGtgaagtgccttaagaacttg	11	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111099189	A	A	111099189	3	1	61	1	0	0	0	0	1	0	0	0	7532	1145	40	4	755	4	HVCN1	12	111099189	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	443320	111099189	22752706	4970	73215											
PPP1CC	5501	broad.mit.edu	37	chr12	111162369	111162369	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaaaggagagtgttctgtCagagaaagtcatcccaatga	10	7	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111162369	T	T	111162369	1	4	61	0	1	0	0	0	0	0	0	0	12452	841	29	4		4	PPP1CC	12	111162369	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	63180	111162369	22689526	4971	73216											
CUX2	23316	broad.mit.edu	37	chr12	111655648	111655648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcaggggccacgggggcGtcccacctggcactgtagtg	16	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111655648	T	T	111655648	1	4	61	0	1	0	0	0	0	0	0	0	4098	1160	40	3		3	CUX2	12	111655648	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	493279	111655648	22196247	4972	73217											
OAS2	4939	broad.mit.edu	37	chr12	113432481	113432481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgatccgcctgcctcagActcccaaagtgctgggatta	11	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113432481	T	T	113432481	1	4	61	0	1	0	0	0	0	0	0	0	10895	290	10	5		5	OAS2	12	113432481	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1776833	113432481	20419414	4973	73218											
TPCN1	53373	broad.mit.edu	37	chr12	113698027	113698027	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgctaattcttgccattatCagtacacagcatggaggttg	10	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113698027	A	A	113698027	1	1	61	0	1	0	0	0	0	0	0	0	16519	841	29	3		3	TPCN1	12	113698027	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	265546	113698027	20153868	4974	73219											
SDSL	113675	broad.mit.edu	37	chr12	113873131	113873131	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctctcaccccccctcccCaggaaaggccacgccagcct	6	23	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113873131	T	T	113873131	1	4	61	0	1	0	0	0	0	0	0	0	14089	609	21	4		4	SDSL	12	113873131	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	175104	113873131	19978764	4975	73220											
TBX5	6910	broad.mit.edu	37	chr12	114793495	114793495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggcccacactgcctgaCcacaggctggtgggccacgg	14	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114793495	A	A	114793495	3	1	61	1	0	0	0	0	1	0	0	0	15783	507	18	3	161	3	TBX5	12	114793495	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	920364	114793495	19058400	4976	73221											
TBX5	6910	broad.mit.edu	37	chr12	114793508	114793508	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgaccacaggctggtgGgccacggaggtctggtgctg	17	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114793508	T	T	114793508	2	4	61	1	0	0	0	0	0	0	0	1	15783	1219	43	2		2	TBX5	12	114793508	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13	114793508	19058387	4977	73222											
TBX3	6926	broad.mit.edu	37	chr12	115121006	115121006	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctctcatggagaggctcatCcactccaggcggggcgctgg	14	13	3	1	rs144772866		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115121006	A	A	115121006	1	1	61	0	1	0	0	0	0	0	0	0	15781	870	30	3		3	TBX3	12	115121006	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	327498	115121006	18730889	4978	73223											
RNFT2	84900	broad.mit.edu	37	chr12	117290545	117290545	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacagtctgctgggagtcaGacctggaattctgattccaa	11	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117290545	T	T	117290545	1	4	61	0	1	0	0	0	0	0	0	0	13613	957	33	3		3	RNFT2	12	117290545	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2169539	117290545	16561350	4979	73224											
NOS1	4842	broad.mit.edu	37	chr12	117660409	117660409	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtacagagcaacttcaTagagggaaaatcaggaagct	11	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117660409	C	C	117660409	1	2	61	0	1	0	0	0	0	0	0	0	10636	1421	49	5		5	NOS1	12	117660409	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	369864	117660409	16191486	4980	73225											
CCDC60	160777	broad.mit.edu	37	chr12	119893743	119893746	+	Intron	DEL	AGAG	-	-													gaggaaagaaagaaagagaaAgagagagaaaggaaggaagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119893746	-	-	119893743	6	5	61	0	1	1	0	1	0	0	0	0	2859	87	3	0		0	CCDC60	12	119893743	Intron	DEL	AGAG	TCGA-17-Z031-01A-01W-0746-08	2233334	119893743	13958152	4981	73226											
CCDC60	160777	broad.mit.edu	37	chr12	119966691	119966691	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattggccatcaacaggatcCcccaccccccagaaacacta	5	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119966691	T	T	119966691	1	4	61	0	1	0	0	0	0	0	0	0	2859	638	22	4		4	CCDC60	12	119966691	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	72948	119966691	13885204	4982	73227											
CIT	11113	broad.mit.edu	37	chr12	120214606	120214606	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagatcctcttccaactgaTtcatcatcaacctcatttct	2	14	6	2	rs149250142	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120214606	A	A	120214606	3	1	61	1	0	0	0	0	1	0	0	0	3469	1493	52	5	4513	5	CIT	12	120214606	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	247915	120214606	13637289	4983	73228											
CCDC64	92558	broad.mit.edu	37	chr12	120502555	120502555	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agatcaagatgctgtcagatCggaaacgggagctggagcat	14	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120502555	T	T	120502555	3	4	61	1	0	0	0	0	1	0	0	0	2863	875	31	4	795	4	CCDC64	12	120502555	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	287949	120502555	13349340	4984	73229											
SIRT4	23409	broad.mit.edu	37	chr12	120741790	120741790	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctgtactggttggtgacCcaaaatgtggatgctttgca	12	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120741790	T	T	120741790	2	4	61	1	0	0	0	0	0	0	0	1	14453	610	22	4		4	SIRT4	12	120741790	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	239235	120741790	13110105	4985	73230											
COQ5	84274	broad.mit.edu	37	chr12	120960118	120960118	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggataccaagactcatcataTcattcatcacatcatacttc	3	12	6	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120960118	C	C	120960118	3	2	61	1	0	0	0	0	1	0	0	0	3780	1435	50	5	756	5	COQ5	12	120960118	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	218328	120960118	12891777	4986	73231											
CABP1	9478	broad.mit.edu	37	chr12	121093820	121093820	+	Intron	DEL	C	-	-													ccctcttgcggaaagcccctCccgggaccaggagccaggct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121093820	-	-	121093820	6	5	61	0	1	1	0	1	0	0	0	0	2557	870	30	0		0	CABP1	12	121093820	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	133702	121093820	12758075	4987	73232											
CAMKK2	10645	broad.mit.edu	37	chr12	121691374	121691374	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacacaggcatggcaccccTctgatgccttgtctcccaca	8	16	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121691374	A	A	121691374	1	1	61	0	1	0	0	0	0	0	0	0	2633	1566	54	5		5	CAMKK2	12	121691374	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	597554	121691374	12160521	4988	73233											
KDM2B	84678	broad.mit.edu	37	chr12	121972260	121972260	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagactccatctcaaaaaaAaaaaaaaagagtaatcctta	4	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121972260	C	C	121972260	1	2	61	0	1	0	0	0	0	0	0	0	8195	29	1	5		5	KDM2B	12	121972260	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	280886	121972260	11879635	4989	73234											
KDM2B	84678	broad.mit.edu	37	chr12	122018107	122018107	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacaaagttttgcaccaacActtaggcagatccgtttgca	7	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122018107	T	T	122018107	1	4	61	0	1	0	0	0	0	0	0	0	8195	174	6	5		5	KDM2B	12	122018107	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	45847	122018107	11833788	4990	73235											
VPS33A	65082	broad.mit.edu	37	chr12	122717273	122717273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagtgctttactattttaCaaagcaactgtacaatacct	4	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122717273	A	A	122717273	1	1	61	0	1	0	0	0	0	0	0	0	17328	493	17	3		3	VPS33A	12	122717273	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	699166	122717273	11134622	4991	73236											
CLIP1	6249	broad.mit.edu	37	chr12	122763534	122763534	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgagggtttgaacgaaagGaggccgcgtgaaagctcgtg	17	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122763534	T	T	122763534	1	4	61	0	1	0	0	0	0	0	0	0	3564	1189	41	3		3	CLIP1	12	122763534	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46261	122763534	11088361	4992	73237											
ZCCHC8	55596	broad.mit.edu	37	chr12	122968060	122968060	+	Frame_Shift_Del	DEL	C	-	-													ttttcatttagaagcggttgCcccaatttatcaaggcaaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122968060	-	-	122968060	7	5	61	1	0	1	0	1	0	0	0	0	17720	726	26	0	1607	0	ZCCHC8	12	122968060	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	204526	122968060	10883835	4993	73238											
RSRC2	65117	broad.mit.edu	37	chr12	122992897	122992897	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaagctttagcttgcagGgctgccatctgagctgccat	11	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122992897	A	A	122992897	2	1	61	1	0	0	0	0	0	0	0	1	13826	1219	43	4		4	RSRC2	12	122992897	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	24837	122992897	10858998	4994	73239											
ABCB9	23457	broad.mit.edu	37	chr12	123414455	123414455	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggagaagcaggggccccCcatcaggccttgtgactgcc	14	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123414455	A	A	123414455	1	1	61	0	1	0	0	0	0	0	0	0	48	638	22	2		2	ABCB9	12	123414455	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	421558	123414455	10437440	4995	73240											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123694650	123694650	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatgatatgaacgtcttctCtaaagtttcaggcaaagagt	8	7	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123694650	A	A	123694650	4	1	61	1	0	0	0	0	0	1	0	0	9822	922	32	3	2472	3	MPHOSPH9	12	123694650	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	280195	123694650	10157245	4996	73241											
SBNO1	55206	broad.mit.edu	37	chr12	123782558	123782558	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatcttccgttcttagccGcacgatctgcatcttcacgt	6	16	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123782558	A	A	123782558	3	1	61	1	0	0	0	0	1	0	0	0	13974	1086	38	4	183	4	SBNO1	12	123782558	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	87908	123782558	10069337	4997	73242											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124209428	124209428	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggctgtgtattttgctattAgttcatatagatatgttgct	9	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124209428	G	G	124209428	1	3	61	0	1	0	0	0	0	0	0	0	1173	435	15	5		5	ATP6V0A2	12	124209428	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	426870	124209428	9642467	4998	73243											
DNAH10	196385	broad.mit.edu	37	chr12	124418218	124418218	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgtctctgcactgcccAtgtcttaacacctctgaggg	9	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124418218	T	T	124418218	1	4	61	0	1	0	0	0	0	0	0	0	4638	232	8	5		5	DNAH10	12	124418218	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	208790	124418218	9433677	4999	73244											
ZNF664	144348	broad.mit.edu	37	chr12	124482574	124482574	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggaatgctggagccaaagAgtgttccctgttccagaaag	13	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124482574	T	T	124482574	1	4	61	0	1	0	0	0	0	0	0	0	18199	319	11	5		5	ZNF664	12	124482574	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	64356	124482574	9369321	5000	73245											
NCOR2	9612	broad.mit.edu	37	chr12	124993064	124993064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccggaacacaagggccCaggcaggcaccacgccgagg	14	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124993064	A	A	124993064	1	1	61	0	1	0	0	0	0	0	0	0	10331	609	21	2		2	NCOR2	12	124993064	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	510490	124993064	8858831	5001	73246											
UBC	7316	broad.mit.edu	37	chr12	125398153	125398153	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatgttgtagtcagacagGgtgcgcccatcttccagctg	13	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125398153	A	A	125398153	2	1	61	1	0	0	0	0	0	0	0	1	16968	1219	43	4		4	UBC	12	125398153	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	405089	125398153	8453742	5002	73247											
DHX37	57647	broad.mit.edu	37	chr12	125432557	125432557	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagccagggctgaccgtgCacaaagcacaaagcccctgc	10	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125432557	T	T	125432557	1	4	61	0	1	0	0	0	0	0	0	0	4550	725	25	4		4	DHX37	12	125432557	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34404	125432557	8419338	5003	73248											
TMEM132B	114795	broad.mit.edu	37	chr12	126128773	126128773	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagattgagatctcagAcaccgagctgagccagatca	10	12	2	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126128773	T	T	126128773	3	4	61	1	0	0	0	0	1	0	0	0	16169	275	10	5	1596	5	TMEM132B	12	126128773	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	696216	126128773	7723122	5004	73249											
TMEM132B	114795	broad.mit.edu	37	chr12	126135490	126135490	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgggagccgggaataacCacggtgcaggtacacgccgc	16	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126135490	A	A	126135490	2	1	61	1	0	0	0	0	0	0	0	1	16169	581	21	2		2	TMEM132B	12	126135490	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6717	126135490	7716405	5005	73250											
TMEM132D	121256	broad.mit.edu	37	chr12	129558885	129558885	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaacctgtttgtgtctGtattttaatgcaaaggtcac	10	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129558885	T	T	129558885	4	4	61	1	0	0	0	0	0	1	0	0	16170	1372	48	3	468	3	TMEM132D	12	129558885	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3423395	129558885	4293010	5006	73251											
TMEM132D	121256	broad.mit.edu	37	chr12	129566496	129566496	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaaactgcgtcaggacccgCaccatggcgtgctggtactg	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129566496	G	G	129566496	2	3	61	1	0	0	0	0	0	0	0	1	16170	697	25	4		4	TMEM132D	12	129566496	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7611	129566496	4285399	5007	73252											
TMEM132D	121256	broad.mit.edu	37	chr12	129784960	129784960	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtgacgatgaatatcaCtgagcacccacctaacttag	7	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129784960	G	G	129784960	1	3	61	0	1	0	0	0	0	0	0	0	16170	580	20	4		4	TMEM132D	12	129784960	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	218464	129784960	4066935	5008	73253											
TMEM132D	121256	broad.mit.edu	37	chr12	129785507	129785507	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagttaccccactcctgtctCcctcttatacaaggactcct	4	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129785507	A	A	129785507	1	1	61	0	1	0	0	0	0	0	0	0	16170	870	30	3		3	TMEM132D	12	129785507	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	547	129785507	4066388	5009	73254											
TMEM132D	121256	broad.mit.edu	37	chr12	130231722	130231723	+	Intron	INS	-	CTCCTTCTCCCTCCTCCCG	CTCCTTCTCCCTCCTCCCG													ccgtcgcttgtccaatagctINSctccttctccctcctccctc					rs149346895	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTCCTTCTCCCTCCTCCCG	130231723	CTCCTTCTCCCTCCTCCCG	CTCCTTCTCCCTCCTCCCG	130231722	6	5	61	0	1	1	1	0	0	0	0	0	16170	1566	54	0		0	TMEM132D	12	130231722	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	446215	130231722	3620173	5010	73255											
PIWIL1	9271	broad.mit.edu	37	chr12	130831604	130831604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctataatattattttcaGgaggtatgtgttttatttca	7	3	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130831604	T	T	130831604	3	4	61	1	0	0	0	0	1	0	0	0	12052	1000	35	2	668	2	PIWIL1	12	130831604	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	599882	130831604	3020291	5011	73256											
RIMBP2	23504	broad.mit.edu	37	chr12	130934721	130934721	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccactcacaggggctcggTggacgccgaggggccgcact	15	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130934721	A	A	130934721	1	1	61	0	1	0	0	0	0	0	0	0	13472	1711	59	5		5	RIMBP2	12	130934721	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	103117	130934721	2917174	5012	73257											
RIMBP2	23504	broad.mit.edu	37	chr12	130935730	130935730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccggcagcccctgcgggaCgggactcacgtctgactcag	13	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130935730	T	T	130935730	1	4	61	0	1	0	0	0	0	0	0	0	13472	551	19	4		4	RIMBP2	12	130935730	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1009	130935730	2916165	5013	73258											
RIMBP2	23504	broad.mit.edu	37	chr12	130941022	130941022	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaccacagccaaggcGgaaggtccaggcgcttacct	10	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130941022	A	A	130941022	1	1	61	0	1	0	0	0	0	0	0	0	13472	1131	39	4		4	RIMBP2	12	130941022	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5292	130941022	2910873	5014	73259											
GPR133	283383	broad.mit.edu	37	chr12	131476638	131476638	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcgccactgcactccagCctgggcaacagagcaagact	10	14	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131476638	T	T	131476638	1	4	61	0	1	0	0	0	0	0	0	0	6708	754	26	4		4	GPR133	12	131476638	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	535616	131476638	2375257	5015	73260											
GPR133	283383	broad.mit.edu	37	chr12	131500254	131500254	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcccttcctctctgcatGtgaccagccgtgagcctgtt	9	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131500254	C	C	131500254	1	2	61	0	1	0	0	0	0	0	0	0	6708	1392	48	4		4	GPR133	12	131500254	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23616	131500254	2351641	5016	73261											
EP400	57634	broad.mit.edu	37	chr12	132448040	132448040	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttgagcagttgtaaaaaTtatgttgcctttttttctca	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132448040	G	G	132448040	1	3	61	0	1	0	0	0	0	0	0	0	5191	1508	52	5		5	EP400	12	132448040	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	947786	132448040	1403855	5017	73262											
EP400	57634	broad.mit.edu	37	chr12	132502647	132502647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtggccgttagaggggGcgcgtctggatgcccacgtt	17	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132502647	T	T	132502647	1	4	61	0	1	0	0	0	0	0	0	0	5191	1218	42	3		3	EP400	12	132502647	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54607	132502647	1349248	5018	73263											
EP400	57634	broad.mit.edu	37	chr12	132529576	132529576	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgtcagccactttctgctGtctgcctgtctgctgtctgc	9	14	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132529576	C	C	132529576	1	2	61	0	1	0	0	0	0	0	0	0	5191	1392	48	4		4	EP400	12	132529576	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26929	132529576	1322319	5019	73264											
PXMP2	5827	broad.mit.edu	37	chr12	133277869	133277870	+	Frame_Shift_Ins	INS	-	G	G													agccttcgccgccaagatgaINSgggggggcttctggccggcg					rs141115887	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133277870	G	G	133277869	7	5	61	1	0	1	1	0	0	0	0	0	12958	295	11	0	447	0	PXMP2	12	133277869	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	748293	133277869	574026	5020	73265											
ZNF10	7556	broad.mit.edu	37	chr12	133732556	133732556	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaatcctacaaatgccctGataatgacaactctcttact	3	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133732556	C	C	133732556	3	2	61	1	0	0	0	0	1	0	0	0	17838	1290	45	4	738	4	ZNF10	12	133732556	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	454687	133732556	119339	5021	73266											
TPTE2	93492	broad.mit.edu	37	chr13	19997208	19997208	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatcattggaagtcatttCtcgccaaaaagtatctccac	5	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19997208	A	A	19997208	3	1	61	1	0	0	0	0	1	0	0	0	16555	912	32	3	9	3	TPTE2	13	19997208	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08		19997208	95172670	5022	73267											
TPTE2	93492	broad.mit.edu	37	chr13	20039207	20039207	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgcaactgagtagtccTgaattgagaagacatgcaga	11	7	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20039207	A	A	20039207	1	1	61	0	1	0	0	0	0	0	0	0	16555	1595	55	5		5	TPTE2	13	20039207	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	41999	20039207	95130671	5023	73268											
XPO4	64328	broad.mit.edu	37	chr13	21416970	21416970	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcagaggtgaaagactccGagctgtaattaagtcaccta	10	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21416970	A	A	21416970	1	1	61	0	1	0	0	0	0	0	0	0	17573	1073	37	4		4	XPO4	13	21416970	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1377763	21416970	93752908	5024	73269											
SGCG	6445	broad.mit.edu	37	chr13	23808855	23808855	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatacactccagagtggtaAgaaaatgttaagacaaataa	7	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23808855	C	C	23808855	1	2	61	0	1	0	0	0	0	0	0	0	14316	87	3	5		5	SGCG	13	23808855	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2391885	23808855	91361023	5025	73270											
SACS	26278	broad.mit.edu	37	chr13	23907231	23907231	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaacaactgctgctgagaaAgtatgtattttagtccaata	8	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23907231	C	C	23907231	3	2	61	1	0	0	0	0	1	0	0	0	13915	72	3	5	2959	5	SACS	13	23907231	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	98376	23907231	91262647	5026	73271											
SACS	26278	broad.mit.edu	37	chr13	23908500	23908500	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgatatgttgttagaaacTtgggtcgttttgcatcaaaa	9	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23908500	C	C	23908500	3	2	61	1	0	0	0	0	1	0	0	0	13915	1609	56	5	4228	5	SACS	13	23908500	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1269	23908500	91261378	5027	73272											
C1QTNF9B	387911	broad.mit.edu	37	chr13	24468217	24468217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatggaggacttgtccatGgtaatattgttaaatagtcg	11	5	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24468217	T	T	24468217	1	4	61	0	1	0	0	0	0	0	0	0	1991	1363	47	2		2	C1QTNF9B	13	24468217	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	559717	24468217	90701661	5028	73273											
C1QTNF9	338872	broad.mit.edu	37	chr13	24895697	24895697	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctccagaaatgttcaggtgTctttggtcaaaaatggagta	10	6	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24895697	A	A	24895697	3	1	61	1	0	0	0	0	1	0	0	0	1990	1667	58	5	803	5	C1QTNF9	13	24895697	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	427480	24895697	90274181	5029	73274											
RNF17	56163	broad.mit.edu	37	chr13	25376760	25376760	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagattatagctataaatGagagtagcagattttgcctt	9	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25376760	T	T	25376760	1	4	61	0	1	0	0	0	0	0	0	0	13572	1305	45	3		3	RNF17	13	25376760	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	481063	25376760	89793118	5030	73275											
ATP8A2	51761	broad.mit.edu	37	chr13	26411085	26411085	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggctaatcagataatgtatGatgtttttagtgttcagtgt	10	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26411085	T	T	26411085	1	4	61	0	1	0	0	0	0	0	0	0	1197	1305	45	3		3	ATP8A2	13	26411085	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1034325	26411085	88758793	5031	73276											
ATP8A2	51761	broad.mit.edu	37	chr13	26417366	26417366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgcaggtgcacaggaCctgagctgctgaggccatag	14	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26417366	A	A	26417366	1	1	61	0	1	0	0	0	0	0	0	0	1197	522	18	3		3	ATP8A2	13	26417366	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6281	26417366	88752512	5032	73277											
ATP8A2	51761	broad.mit.edu	37	chr13	26424474	26424474	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttatttatagagacttttTtggagcctatacatttgacc	6	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26424474	G	G	26424474	1	3	61	0	1	0	0	0	0	0	0	0	1197	1856	64	5		5	ATP8A2	13	26424474	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	7108	26424474	88745404	5033	73278											
ATP8A2	51761	broad.mit.edu	37	chr13	26477559	26477559	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactaaccccacctggtctcCcatcctccatcctgtcccct	3	22	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26477559	T	T	26477559	1	4	61	0	1	0	0	0	0	0	0	0	1197	638	22	4		4	ATP8A2	13	26477559	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53085	26477559	88692319	5034	73279											
WASF3	10810	broad.mit.edu	37	chr13	27219000	27219000	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacatgagcgagaccgcaaGgcccacaaggtggaggcagc	15	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27219000	C	C	27219000	1	2	61	0	1	0	0	0	0	0	0	0	17381	1015	35	4		4	WASF3	13	27219000	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	741441	27219000	87950878	5035	73280											
WASF3	10810	broad.mit.edu	37	chr13	27256784	27256784	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtattacaacccatccGgaccacctcctccgccacct	5	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27256784	T	T	27256784	4	4	61	1	0	0	0	0	0	1	0	0	17381	1117	39	1	1050	1	WASF3	13	27256784	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37784	27256784	87913094	5036	73281											
GPR12	2835	broad.mit.edu	37	chr13	27332968	27332968	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgcaagggtgctacacatCactgggcgagcgcgctctct	14	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27332968	A	A	27332968	3	1	61	1	0	0	0	0	1	0	0	0	6700	826	29	3	11	3	GPR12	13	27332968	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76184	27332968	87836910	5037	73282											
FLT3	2322	broad.mit.edu	37	chr13	28601168	28601168	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgaagtgtgtttgaacagCacactttgcctacgttctat	8	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28601168	G	G	28601168	1	3	61	0	1	0	0	0	0	0	0	0	6000	725	25	4		4	FLT3	13	28601168	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1268200	28601168	86568710	5038	73283											
FLT1	2321	broad.mit.edu	37	chr13	28874755	28874755	+	3'UTR	DEL	A	-	-													taatcaatttaaatgaggctAgcgagtatctgtttgatgtt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28874755	-	-	28874755	6	5	61	0	1	1	0	1	0	0	0	0	5999	435	15	0		0	FLT1	13	28874755	3'UTR	DEL	A	TCGA-17-Z031-01A-01W-0746-08	273587	28874755	86295123	5039	73284											
FLT1	2321	broad.mit.edu	37	chr13	29004175	29004175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaactgttatggaaataaGgatggtcctaccatacaact	7	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29004175	T	T	29004175	1	4	61	0	1	0	0	0	0	0	0	0	5999	1015	35	2		2	FLT1	13	29004175	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	129420	29004175	86165703	5040	73285											
C13orf33	84935	broad.mit.edu	37	chr13	31498618	31498618	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgcactccaggcctgtgCtagactataggctgggggga	14	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31498618	A	A	31498618	1	1	61	0	1	0	0	0	0	0	0	0	1740	812	28	3		3	C13orf33	13	31498618	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2494443	31498618	83671260	5041	73286											
C13orf26	122046	broad.mit.edu	37	chr13	31513948	31513948	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgttggattgatatacaTgttttaatttgttgacttgt	9	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31513948	A	A	31513948	1	1	61	0	1	0	0	0	0	0	0	0	1735	1479	51	5		5	C13orf26	13	31513948	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15330	31513948	83655930	5042	73287											
B3GALTL	145173	broad.mit.edu	37	chr13	31843330	31843330	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttttggttaaaaaaaatCaaattgtctctattttctag	4	5	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31843330	G	G	31843330	1	3	61	0	1	0	0	0	0	0	0	0	1257	841	29	4		4	B3GALTL	13	31843330	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	329382	31843330	83326548	5043	73288											
FRY	10129	broad.mit.edu	37	chr13	32761879	32761879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgtgtaagcattgttcaCaatacctcttcacacatcag	6	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32761879	T	T	32761879	1	4	61	0	1	0	0	0	0	0	0	0	6123	493	17	4		4	FRY	13	32761879	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	918549	32761879	82407999	5044	73289											
FRY	10129	broad.mit.edu	37	chr13	32811610	32811610	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccgggaaccaccagcggcAacaccgcaactgccgaacgg	11	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32811610	T	T	32811610	3	4	61	1	0	0	0	0	1	0	0	0	6123	130	5	5	6079	5	FRY	13	32811610	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	49731	32811610	82358268	5045	73290											
FRY	10129	broad.mit.edu	37	chr13	32818135	32818135	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacgggtccttccatacggAgatctggtgtgtgactgact	12	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32818135	T	T	32818135	1	4	61	0	1	0	0	0	0	0	0	0	6123	319	11	5		5	FRY	13	32818135	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6525	32818135	82351743	5046	73291											
N4BP2L2	10443	broad.mit.edu	37	chr13	33016677	33016677	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcccatcttttcagctttCtatcaaacctttcatttaaa	1	12	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33016677	G	G	33016677	3	3	61	1	0	0	0	0	1	0	0	0	10206	913	32	4	273	4	N4BP2L2	13	33016677	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	198542	33016677	82153201	5047	73292											
KL	9365	broad.mit.edu	37	chr13	33628454	33628454	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcatttcctgccaaaatcTtctggaaaaaaatctctaag	4	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33628454	G	G	33628454	1	3	61	0	1	0	0	0	0	0	0	0	8402	1624	56	5		5	KL	13	33628454	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	611777	33628454	81541424	5048	73293											
RFC3	5983	broad.mit.edu	37	chr13	34404010	34404010	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgacaaactcaccaaagaTgctcagcatgccttgcgaag	9	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34404010	C	C	34404010	2	2	61	1	0	0	0	0	0	0	0	1	13354	1461	51	5		5	RFC3	13	34404010	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	775556	34404010	80765868	5049	73294											
MAB21L1	4081	broad.mit.edu	37	chr13	36049420	36049420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcccagtccgactctcgggGatgcttttcacactcgtagg	11	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36049420	T	T	36049420	3	4	61	1	0	0	0	0	1	0	0	0	9229	1174	41	3	227	3	MAB21L1	13	36049420	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1645410	36049420	79120458	5050	73295											
DCLK1	9201	broad.mit.edu	37	chr13	36443353	36443353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggggagttttccatgCagcaattccaggatcactct	9	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36443353	A	A	36443353	1	1	61	0	1	0	0	0	0	0	0	0	4324	725	25	3		3	DCLK1	13	36443353	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	393933	36443353	78726525	5051	73296											
SMAD9	4093	broad.mit.edu	37	chr13	37439960	37439960	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggctgtgtagttcatgattCcaccaggaaacttagttaat	10	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37439960	G	G	37439960	1	3	61	0	1	0	0	0	0	0	0	0	14878	870	30	4		4	SMAD9	13	37439960	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	996607	37439960	77729918	5052	73297											
POSTN	10631	broad.mit.edu	37	chr13	38160149	38160149	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttttggaagacatagtacAtctcagaataaaaatttttc	5	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38160149	G	G	38160149	1	3	61	0	1	0	0	0	0	0	0	0	12354	232	8	5		5	POSTN	13	38160149	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	720189	38160149	77009729	5053	73298											
TRPC4	7223	broad.mit.edu	37	chr13	38229207	38229207	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaacattgaattaaaaTaaagctggtcaacttacagc	8	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38229207	C	C	38229207	1	2	61	0	1	0	0	0	0	0	0	0	16705	1421	49	5		5	TRPC4	13	38229207	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	69058	38229207	76940671	5054	73299											
FREM2	341640	broad.mit.edu	37	chr13	39453257	39453257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacattgaataagatatgGcaaataaactacataaccct	6	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39453257	T	T	39453257	1	4	61	0	1	0	0	0	0	0	0	0	6105	1218	42	3		3	FREM2	13	39453257	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1224050	39453257	75716621	5055	73300											
LHFP	10186	broad.mit.edu	37	chr13	40073088	40073088	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcactgcaacctccacctCccaggttcgactgattctcc	6	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40073088	A	A	40073088	1	1	61	0	1	0	0	0	0	0	0	0	8835	870	30	3		3	LHFP	13	40073088	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	619831	40073088	75096790	5056	73301											
LHFP	10186	broad.mit.edu	37	chr13	40077327	40077328	+	Intron	INS	-	A	A													ctacctgacccggcaccctcINSaaccactggacacatcgctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40077328	A	A	40077327	6	5	61	0	1	1	1	0	0	0	0	0	8835	841	29	0		0	LHFP	13	40077327	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	4239	40077327	75092551	5057	73302											
COG6	57511	broad.mit.edu	37	chr13	40342257	40342258	+	Intron	DEL	AT	-	-													tttcttgcagtttaacacacAtgtctgtctatctctttcac					rs142546274		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40342258	-	-	40342257	6	5	61	0	1	1	0	1	0	0	0	0	3694	232	8	0		0	COG6	13	40342257	Intron	DEL	AT	TCGA-17-Z031-01A-01W-0746-08	264930	40342257	74827621	5058	73303											
NAA16	79612	broad.mit.edu	37	chr13	41894718	41894718	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatcccaggcaaaataccAtttccttaatgtaactttta	3	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41894718	G	G	41894718	1	3	61	0	1	0	0	0	0	0	0	0	10213	232	8	5		5	NAA16	13	41894718	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1552461	41894718	73275160	5059	73304											
NAA16	79612	broad.mit.edu	37	chr13	41895016	41895016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagacaaaatttaagagcGtgtcatttcagaatgaggtg	11	4	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41895016	T	T	41895016	1	4	61	0	1	0	0	0	0	0	0	0	10213	1160	40	3		3	NAA16	13	41895016	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	298	41895016	73274862	5060	73305											
NAA16	79612	broad.mit.edu	37	chr13	41929322	41929322	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactaattatgaagcctctCttaaaacgtgtgactttttt	5	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41929322	A	A	41929322	3	1	61	1	0	0	0	0	1	0	0	0	10213	913	32	3	1095	3	NAA16	13	41929322	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34306	41929322	73240556	5061	73306											
EPSTI1	94240	broad.mit.edu	37	chr13	43500443	43500443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctctataaaatgtgccaGgcagcaccctgcaaagtaat	7	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43500443	A	A	43500443	1	1	61	0	1	0	0	0	0	0	0	0	5240	1015	35	4		4	EPSTI1	13	43500443	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1571121	43500443	71669435	5062	73307											
ENOX1	55068	broad.mit.edu	37	chr13	43865871	43865871	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccgaaacaggctcctgttCaagatgtcagaggcaatgta	10	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43865871	G	G	43865871	1	3	61	0	1	0	0	0	0	0	0	0	5168	841	29	4		4	ENOX1	13	43865871	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	365428	43865871	71304007	5063	73308											
KIAA1704	55425	broad.mit.edu	37	chr13	45580263	45580263	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actagatttaatgcttttttAaaaaaaattaaaatgtgctt	4	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45580263	T	T	45580263	1	4	61	0	1	0	0	0	0	0	0	0	8322	377	13	5		5	KIAA1704	13	45580263	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1714392	45580263	69589615	5064	73309											
SLC25A30	253512	broad.mit.edu	37	chr13	45973025	45973025	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatttagttacttcttagatCaaaaaaatatataattcaca	2	5	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45973025	A	A	45973025	1	1	61	0	1	0	0	0	0	0	0	0	14608	841	29	3		3	SLC25A30	13	45973025	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	392762	45973025	69196853	5065	73310											
C13orf18	80183	broad.mit.edu	37	chr13	46942721	46942721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggaacccttcttagcttaGtgtttctggcagtctccatc	8	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46942721	T	T	46942721	1	4	61	0	1	0	0	0	0	0	0	0	1733	1044	36	3		3	C13orf18	13	46942721	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	969696	46942721	68227157	5066	73311											
RB1	5925	broad.mit.edu	37	chr13	48941739	48941739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagactgattctatagacaGgtattgcacatggtatattt	8	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48941739	T	T	48941739	3	4	61	1	0	0	0	0	1	0	0	0	13206	1014	35	2	1087	2	RB1	13	48941739	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1999018	48941739	66228139	5067	73312											
CAB39L	81617	broad.mit.edu	37	chr13	49913921	49913921	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagtgtaaaagcagcagtGgattctccgtattaggctgg	13	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49913921	A	A	49913921	1	1	61	0	1	0	0	0	0	0	0	0	2552	1363	47	4		4	CAB39L	13	49913921	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	972182	49913921	65255957	5068	73313											
INTS6	26512	broad.mit.edu	37	chr13	51957643	51957672	+	Intron	DEL	TTACATAAACCATTGATTCAATTCAGCTTT	-	-													ttaataacctttaaagaatgTtacataaaccattgattcaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51957672	-	-	51957643	6	5	61	0	1	1	0	1	0	0	0	0	7852	1740	60	0		0	INTS6	13	51957643	Intron	DEL	TTACATAAACCATTGATTCAATTCAGCTTT	TCGA-17-Z031-01A-01W-0746-08	2043722	51957643	63212235	5069	73314											
WDFY2	115825	broad.mit.edu	37	chr13	52234889	52234889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaagtagagaagactgaGgttgggattctcattataat	10	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52234889	T	T	52234889	1	4	61	0	1	0	0	0	0	0	0	0	17396	1015	35	2		2	WDFY2	13	52234889	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	277246	52234889	62934989	5070	73315											
ATP7B	540	broad.mit.edu	37	chr13	52548913	52548913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggtcatgccctccaccCggagcttgaccacagcctcc	10	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52548913	A	A	52548913	3	1	61	1	0	0	0	0	1	0	0	0	1195	652	23	1	4034	1	ATP7B	13	52548913	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	314024	52548913	62620965	5071	73316											
THSD1	55901	broad.mit.edu	37	chr13	52960439	52960439	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagcccgtgagttaaagCgttcccagagatgaagaaag	12	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52960439	G	G	52960439	1	3	61	0	1	0	0	0	0	0	0	0	16000	783	27	4		4	THSD1	13	52960439	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	411526	52960439	62209439	5072	73317											
PCDH8	5100	broad.mit.edu	37	chr13	53422150	53422150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccctcggacacctctaccGggatctgggccctggggaag	13	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53422150	T	T	53422150	3	4	61	1	0	0	0	0	1	0	0	0	11611	1116	39	1	2802	1	PCDH8	13	53422150	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	461711	53422150	61747728	5073	73318											
PCDH17	27253	broad.mit.edu	37	chr13	58207066	58207066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggacatcaacgacaacgCgccctccttctcctcggacc	7	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58207066	A	A	58207066	3	1	61	1	0	0	0	0	1	0	0	0	11606	768	27	3	388	3	PCDH17	13	58207066	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4784916	58207066	56962812	5074	73319											
PCDH17	27253	broad.mit.edu	37	chr13	58207348	58207348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacggtggcgagcctccacGttccgccaccgtacagatca	12	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207348	T	T	58207348	3	4	61	1	0	0	0	0	1	0	0	0	11606	1145	40	3	670	3	PCDH17	13	58207348	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	282	58207348	56962530	5075	73320											
PCDH17	27253	broad.mit.edu	37	chr13	58207777	58207777	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctgagcgaggccgcccCtcccggcaccgtcatcgccc	13	20	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207777	T	T	58207777	3	4	61	1	0	0	0	0	1	0	0	0	11606	681	24	4	1099	4	PCDH17	13	58207777	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	429	58207777	56962101	5076	73321											
PCDH17	27253	broad.mit.edu	37	chr13	58298838	58298838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttccctgcagccaatcagGctgaaaatgcagattaccgc	9	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58298838	T	T	58298838	3	4	61	1	0	0	0	0	1	0	0	0	11606	1203	42	3	2904	3	PCDH17	13	58298838	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	91061	58298838	56871040	5077	73322											
TDRD3	81550	broad.mit.edu	37	chr13	61103100	61103100	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagaatccagttcgaagtAatagtttcattggtgttcca	8	7	2	1	rs151029002		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61103100	T	T	61103100	3	4	61	1	0	0	0	0	1	0	0	0	15854	362	13	5	1783	5	TDRD3	13	61103100	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2804262	61103100	54066778	5078	73323											
PCDH20	64881	broad.mit.edu	37	chr13	61987879	61987879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgggaggccaggctgaagGagagaggggggttccactca	18	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61987879	T	T	61987879	3	4	61	1	0	0	0	0	1	0	0	0	11609	1174	41	3	2506	3	PCDH20	13	61987879	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	884779	61987879	53181999	5079	73324											
PCDH9	5101	broad.mit.edu	37	chr13	67205351	67205351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggactcaccagagttggGatcagagttgccatctgctt	13	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67205351	T	T	67205351	3	4	61	1	0	0	0	0	1	0	0	0	11612	1174	41	3	390	3	PCDH9	13	67205351	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5217472	67205351	47964527	5080	73325											
KLHL1	57626	broad.mit.edu	37	chr13	70353527	70353527	+	Intron	DEL	C	-	-													cccctctcctcccctgtcctCccctcttccctcctttcctt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70353527	-	-	70353527	6	5	61	0	1	1	0	1	0	0	0	0	8436	870	30	0		0	KLHL1	13	70353527	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	3148176	70353527	44816351	5081	73326											
KLHL1	57626	broad.mit.edu	37	chr13	70445412	70445412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaagtggcacagggaaGtggtgctctgagcctgtccc	13	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70445412	T	T	70445412	1	4	61	0	1	0	0	0	0	0	0	0	8436	1044	36	3		3	KLHL1	13	70445412	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	91885	70445412	44724466	5082	73327											
KLHL1	57626	broad.mit.edu	37	chr13	70469365	70469365	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accagttgcagtttgctggcAgcatctggtccctttgtttt	10	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70469365	T	T	70469365	1	4	61	0	1	0	0	0	0	0	0	0	8436	203	7	5		5	KLHL1	13	70469365	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	23953	70469365	44700513	5083	73328											
KLHL1	57626	broad.mit.edu	37	chr13	70514419	70514419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttaaaaacatgaaataaTatgtatcataacactacaca	2	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70514419	C	C	70514419	1	2	61	0	1	0	0	0	0	0	0	0	8436	1421	49	5		5	KLHL1	13	70514419	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	45054	70514419	44655459	5084	73329											
DACH1	1602	broad.mit.edu	37	chr13	72049785	72049785	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaacacatgcctaaactgtCctttaagcattaaaaatgac	4	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72049785	A	A	72049785	1	1	61	0	1	0	0	0	0	0	0	0	4253	870	30	3		3	DACH1	13	72049785	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1535366	72049785	43120093	5085	73330											
DIS3	22894	broad.mit.edu	37	chr13	73334092	73334092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctcatcctccccttcccCactgccagcttcaaatttaa	2	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73334092	A	A	73334092	1	1	61	0	1	0	0	0	0	0	0	0	4575	609	21	2		2	DIS3	13	73334092	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1284307	73334092	41835786	5086	73331											
DIS3	22894	broad.mit.edu	37	chr13	73347171	73347171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactttgtaagggtccagCtcttacattctaaagcatct	7	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73347171	A	A	73347171	1	1	61	0	1	0	0	0	0	0	0	0	4575	812	28	3		3	DIS3	13	73347171	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13079	73347171	41822707	5087	73332											
KLF12	11278	broad.mit.edu	37	chr13	74326052	74326052	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attggctgaaacttacagggTcctttgtaccctgaggacac	10	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74326052	C	C	74326052	1	2	61	0	1	0	0	0	0	0	0	0	8411	1682	58	5		5	KLF12	13	74326052	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	978881	74326052	40843826	5088	73333											
TBC1D4	9882	broad.mit.edu	37	chr13	75989424	75989424	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacatccagttgtagacaTtcaccagtgctggtggctgt	11	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75989424	A	A	75989424	1	1	61	0	1	0	0	0	0	0	0	0	15744	1508	52	5		5	TBC1D4	13	75989424	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1663372	75989424	39180454	5089	73334											
LMO7	4008	broad.mit.edu	37	chr13	76393660	76393660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagacgtttaaggaaatGctgcaggacaggtaataatg	11	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76393660	T	T	76393660	3	4	61	1	0	0	0	0	1	0	0	0	8929	1319	46	3	2406	3	LMO7	13	76393660	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	404236	76393660	38776218	5090	73335											
CLN5	1203	broad.mit.edu	37	chr13	77565586	77565587	+	5'Flank	DEL	GG	-	-													gtgaggggagcggtaggggaGggggtagattcggcagcact					rs67752342		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77565587	-	-	77565586	6	5	61	0	1	1	0	1	0	0	0	0	3576	1015	35	0		0	CLN5	13	77565586	5'Flank	DEL	GG	TCGA-17-Z031-01A-01W-0746-08	1171926	77565586	37604292	5091	73336											
MYCBP2	23077	broad.mit.edu	37	chr13	77664259	77664259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagtgtctccactgttaaCtcttcttctaggaatagctt	6	11	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77664259	A	A	77664259	3	1	61	1	0	0	0	0	1	0	0	0	10112	565	20	3	3625	3	MYCBP2	13	77664259	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	98673	77664259	37505619	5092	73337											
MYCBP2	23077	broad.mit.edu	37	chr13	77752145	77752145	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatacctttaacaaaaccatCcaaaggtttctaagaagtct	4	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77752145	A	A	77752145	1	1	61	0	1	0	0	0	0	0	0	0	10112	870	30	3		3	MYCBP2	13	77752145	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	87886	77752145	37417733	5093	73338											
MYCBP2	23077	broad.mit.edu	37	chr13	77835589	77835589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgaggaaaaaaaaggaCatcaatattttattgaaaaa	6	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77835589	A	A	77835589	1	1	61	0	1	0	0	0	0	0	0	0	10112	493	17	3		3	MYCBP2	13	77835589	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83444	77835589	37334289	5094	73339											
RBM26	64062	broad.mit.edu	37	chr13	79896441	79896441	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacattttatataaaagctaTgaacgattaagggtaaaaat	6	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79896441	C	C	79896441	1	2	61	0	1	0	0	0	0	0	0	0	13234	1479	51	5		5	RBM26	13	79896441	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2060852	79896441	35273437	5095	73340											
SLITRK1	114798	broad.mit.edu	37	chr13	84455387	84455387	+	Missense_Mutation	SNP	T	C	C													attgttttccatgtgcaaacTaaccgcattataaaagttag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84455387	C	C	84455387	3	2	61	1	0	0	0	0	1	0	0	0	14856	1522	53	5	1838	5	SLITRK1	13	84455387	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4558946	84455387	30714491	5096	73341	332	2									
SLITRK1	114798	broad.mit.edu	37	chr13	84455389	84455389	+	Missense_Mutation	SNP	A	G	G													tgttttccatgtgcaaactaAccgcattataaaagttagcg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84455389	G	G	84455389	3	3	61	1	0	0	0	0	1	0	0	0	14856	43	2	5	1840	5	SLITRK1	13	84455389	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2	84455389	30714489	5097	73342	332	2									
SLITRK5	26050	broad.mit.edu	37	chr13	88329046	88329046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctacctgaatggcaacaGgatcgagaggctgagcccgg	13	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88329046	T	T	88329046	3	4	61	1	0	0	0	0	1	0	0	0	14860	1000	35	2	1405	2	SLITRK5	13	88329046	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3873657	88329046	26840832	5098	73343											
GPC5	2262	broad.mit.edu	37	chr13	92216116	92216117	+	Intron	INS	-	C	C													catttccttcctcaatgttgINSctgccagcctcctcccggag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92216117	C	C	92216116	6	5	61	0	1	1	1	0	0	0	0	0	6666	1334	46	0		0	GPC5	13	92216116	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	3887070	92216116	22953762	5099	73344											
GPC5	2262	broad.mit.edu	37	chr13	92345499	92345499	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagtatacttttttgcagTacctacaggaacatggcctt	7	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92345499	G	G	92345499	3	3	61	1	0	0	0	0	1	0	0	0	6666	1635	57	5	394	5	GPC5	13	92345499	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	129383	92345499	22824379	5100	73345											
GPC5	2262	broad.mit.edu	37	chr13	92346038	92346038	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actctcggatgcaatgcatgGaacatacgacattggacacg	10	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92346038	C	C	92346038	3	2	61	1	0	0	0	0	1	0	0	0	6666	1174	41	4	933	4	GPC5	13	92346038	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	539	92346038	22823840	5101	73346											
GPC5	2262	broad.mit.edu	37	chr13	92408470	92408470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattatatcctaaacattatGtataacaatacatatcattt	1	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92408470	T	T	92408470	1	4	61	0	1	0	0	0	0	0	0	0	6666	1392	48	3		3	GPC5	13	92408470	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62432	92408470	22761408	5102	73347											
GPC5	2262	broad.mit.edu	37	chr13	92482344	92482344	+	Intron	DEL	G	-	-													ctgggagtgctatgggagatGggggtctatttcacccctac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92482344	-	-	92482344	6	5	61	0	1	1	0	1	0	0	0	0	6666	1363	47	0		0	GPC5	13	92482344	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	73874	92482344	22687534	5103	73348											
GPC5	2262	broad.mit.edu	37	chr13	92635597	92635598	+	Intron	INS	-	A	A													gacagagccagaccctgtctINScaaaaaaaaaaggacccaag					rs138322966	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92635598	A	A	92635597	6	5	61	0	1	1	1	0	0	0	0	0	6666	1566	54	0		0	GPC5	13	92635597	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	153253	92635597	22534281	5104	73349											
GPC5	2262	broad.mit.edu	37	chr13	93419881	93419881	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcacagaaagtgaaacttCacctcctgcagtctctgtta	6	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93419881	A	A	93419881	1	1	61	0	1	0	0	0	0	0	0	0	6666	841	29	3		3	GPC5	13	93419881	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	784284	93419881	21749997	5105	73350											
GPC5	2262	broad.mit.edu	37	chr13	93518665	93518665	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acattcactctgataagtgtGgtgatgttacttcccgggat	10	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93518665	A	A	93518665	2	1	61	1	0	0	0	0	0	0	0	1	6666	1335	47	4		4	GPC5	13	93518665	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98784	93518665	21651213	5106	73351											
ABCC4	10257	broad.mit.edu	37	chr13	95723836	95723836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtatcactgatccccttcaCacatccacaaggaagacaac	5	15	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95723836	A	A	95723836	1	1	61	0	1	0	0	0	0	0	0	0	55	493	17	3		3	ABCC4	13	95723836	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2205171	95723836	19446042	5107	73352											
ABCC4	10257	broad.mit.edu	37	chr13	95830321	95830321	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctcctatcacagtcagatCaccatcctccaacagctgta	4	15	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95830321	A	A	95830321	3	1	61	1	0	0	0	0	1	0	0	0	55	826	29	3	2536	3	ABCC4	13	95830321	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	106485	95830321	19339557	5108	73353											
DZIP1	22873	broad.mit.edu	37	chr13	96237243	96237243	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattttattggttagactgAgcatctaacactgaaccata	6	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96237243	T	T	96237243	1	4	61	0	1	0	0	0	0	0	0	0	4903	319	11	5		5	DZIP1	13	96237243	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	406922	96237243	18932635	5109	73354											
HS6ST3	266722	broad.mit.edu	37	chr13	96884614	96884614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtaataaggaaaaggaGgtgttggggatagtagagtc	16	1	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96884614	T	T	96884614	1	4	61	0	1	0	0	0	0	0	0	0	7439	1015	35	2		2	HS6ST3	13	96884614	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	647371	96884614	18285264	5110	73355											
HS6ST3	266722	broad.mit.edu	37	chr13	96887614	96887614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaactagtcagagcaggCagtcaactgatgtttgaagg	12	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96887614	A	A	96887614	1	1	61	0	1	0	0	0	0	0	0	0	7439	725	25	3		3	HS6ST3	13	96887614	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3000	96887614	18282264	5111	73356											
HS6ST3	266722	broad.mit.edu	37	chr13	97132181	97132181	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaattggggtgagcttttcaCcttagcccagaattgaccca	10	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97132181	G	G	97132181	1	3	61	0	1	0	0	0	0	0	0	0	7439	522	18	4		4	HS6ST3	13	97132181	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	244567	97132181	18037697	5112	73357											
HS6ST3	266722	broad.mit.edu	37	chr13	97152062	97152062	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaagtgtgggtgggagggTgcattgcatcatactgggcc	16	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97152062	A	A	97152062	1	1	61	0	1	0	0	0	0	0	0	0	7439	1711	59	5		5	HS6ST3	13	97152062	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19881	97152062	18017816	5113	73358											
HS6ST3	266722	broad.mit.edu	37	chr13	97226003	97226003	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtccacagccgtccccagCcctaggtcaggacctcttca	9	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97226003	G	G	97226003	1	3	61	0	1	0	0	0	0	0	0	0	7439	754	26	4		4	HS6ST3	13	97226003	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	73941	97226003	17943875	5114	73359											
HS6ST3	266722	broad.mit.edu	37	chr13	97343878	97343882	+	Intron	DEL	CTTCC	-	-													tttcttttccccttacttttCttcccttcccttcccttccc					rs71658960		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97343882	-	-	97343878	6	5	61	0	1	1	0	1	0	0	0	0	7439	928	32	0		0	HS6ST3	13	97343878	Intron	DEL	CTTCC	TCGA-17-Z031-01A-01W-0746-08	117875	97343878	17826000	5115	73360											
IPO5	3843	broad.mit.edu	37	chr13	98666227	98666227	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgcctagcactccttttAgtgcattgaaccctttaaca	6	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98666227	G	G	98666227	1	3	61	0	1	0	0	0	0	0	0	0	7866	435	15	5		5	IPO5	13	98666227	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1322349	98666227	16503651	5116	73361											
FARP1	10160	broad.mit.edu	37	chr13	98829544	98829544	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcacccttgcgtcgcccTtgcgtcgctgcacgtggggc	14	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98829544	G	G	98829544	1	3	61	0	1	0	0	0	0	0	0	0	5733	1624	56	5		5	FARP1	13	98829544	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	163317	98829544	16340334	5117	73362											
FARP1	10160	broad.mit.edu	37	chr13	99042189	99042189	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggtaatggaaaaaaccaCcgttgtattttcccttttta	7	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99042189	T	T	99042189	1	4	61	0	1	0	0	0	0	0	0	0	5733	522	18	4		4	FARP1	13	99042189	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	212645	99042189	16127689	5118	73363											
STK24	8428	broad.mit.edu	37	chr13	99164625	99164625	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caactcttacctgaggtccaTaaatagaacagagagaaaga	8	8	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99164625	G	G	99164625	1	3	61	0	1	0	0	0	0	0	0	0	15411	1421	49	5		5	STK24	13	99164625	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	122436	99164625	16005253	5119	73364											
GPR18	2841	broad.mit.edu	37	chr13	99907330	99907330	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtggtaaaggctccccagGgattgtaactgttctccccc	11	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99907330	A	A	99907330	3	1	61	1	0	0	0	0	1	0	0	0	6740	1232	43	4	202	4	GPR18	13	99907330	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	742705	99907330	15262548	5120	73365											
TM9SF2	9375	broad.mit.edu	37	chr13	100188942	100188942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcctggatttcctattgGctgttacattacagataaag	7	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100188942	T	T	100188942	3	4	61	1	0	0	0	0	1	0	0	0	16101	1203	42	3	560	3	TM9SF2	13	100188942	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	281612	100188942	14980936	5121	73366											
ZIC2	7546	broad.mit.edu	37	chr13	100637555	100637555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtcccctctggtccccCctcccggcttttgtcttgca	7	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100637555	A	A	100637555	1	1	61	0	1	0	0	0	0	0	0	0	17805	638	22	2		2	ZIC2	13	100637555	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	448613	100637555	14532323	5122	73367											
PCCA	5095	broad.mit.edu	37	chr13	101070550	101070550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaagggcacagttaacatGcgtctgctggtcagggccag	13	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101070550	T	T	101070550	1	4	61	0	1	0	0	0	0	0	0	0	11598	1334	46	3		3	PCCA	13	101070550	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	432995	101070550	14099328	5123	73368											
PCCA	5095	broad.mit.edu	37	chr13	101126695	101126696	+	Intron	DEL	TC	-	-													aattttatgtatttactgttTctctctctctctctctctct					rs144096116		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101126696	-	-	101126695	6	5	61	0	1	1	0	1	0	0	0	0	11598	1798	62	0		0	PCCA	13	101126695	Intron	DEL	TC	TCGA-17-Z031-01A-01W-0746-08	56145	101126695	14043183	5124	73369											
TMTC4	84899	broad.mit.edu	37	chr13	101287161	101287161	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcagcgtgttgatgaataaGattcccagcacgacagcggc	11	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101287161	A	A	101287161	2	1	61	1	0	0	0	0	0	0	0	1	16386	932	33	4		4	TMTC4	13	101287161	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	160466	101287161	13882717	5125	73370											
TMTC4	84899	broad.mit.edu	37	chr13	101321050	101321050	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattatgctggttaggaatcTgcaggaaaaacaacactgta	9	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101321050	C	C	101321050	5	2	61	1	0	0	0	0	0	0	1	0	16386	1594	55	5	2348	5	TMTC4	13	101321050	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	33889	101321050	13848828	5126	73371											
NALCN	259232	broad.mit.edu	37	chr13	101710324	101710324	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcccaaatttcctctGgggtttccctgcgtcggctg	10	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101710324	A	A	101710324	4	1	61	1	0	0	0	0	0	1	0	0	10242	1357	47	4	234	4	NALCN	13	101710324	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	389274	101710324	13459554	5127	73372											
NALCN	259232	broad.mit.edu	37	chr13	102051600	102051600	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccacatatatctacttatTtgtaaggcatatatgtgttc	5	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102051600	G	G	102051600	1	3	61	0	1	0	0	0	0	0	0	0	10242	1856	64	5		5	NALCN	13	102051600	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	341276	102051600	13118278	5128	73373											
ITGBL1	9358	broad.mit.edu	37	chr13	102220220	102220220	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagtataccctgtgaaaaTtgttaagtggaataatcaaa	8	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102220220	G	G	102220220	1	3	61	0	1	0	0	0	0	0	0	0	7972	1508	52	5		5	ITGBL1	13	102220220	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	168620	102220220	12949658	5129	73374											
ITGBL1	9358	broad.mit.edu	37	chr13	102235457	102235457	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatttttgtctgaatatatGtgtttttttcaaacacaaag	5	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102235457	A	A	102235457	1	1	61	0	1	0	0	0	0	0	0	0	7972	1392	48	4		4	ITGBL1	13	102235457	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15237	102235457	12934421	5130	73375											
ITGBL1	9358	broad.mit.edu	37	chr13	102357657	102357658	+	Intron	INS	-	AC	AC													aaagcaaaaaaaaaaaaaaaINSaacaacaacaacaaaaaaaa					rs112395725		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	102357658	AC	AC	102357657	6	5	61	0	1	1	1	0	0	0	0	0	7972	29	1	0		0	ITGBL1	13	102357657	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	122200	102357657	12812221	5131	73376											
ITGBL1	9358	broad.mit.edu	37	chr13	102367884	102367884	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcacattttgatcataaTcatgatacctatatgtattt	5	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102367884	G	G	102367884	1	3	61	0	1	0	0	0	0	0	0	0	7972	1450	50	5		5	ITGBL1	13	102367884	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10227	102367884	12801994	5132	73377											
FGF14	2259	broad.mit.edu	37	chr13	102430526	102430526	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggttataatgttattttAcccagttggaactgtctgcc	9	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102430526	T	T	102430526	1	4	61	0	1	0	0	0	0	0	0	0	5900	406	14	5		5	FGF14	13	102430526	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	62642	102430526	12739352	5133	73378											
FGF14	2259	broad.mit.edu	37	chr13	102654895	102654895	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgagagctctgaatgctGtccaacccaaatggaatgtg	11	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102654895	T	T	102654895	1	4	61	0	1	0	0	0	0	0	0	0	5900	1392	48	3		3	FGF14	13	102654895	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	224369	102654895	12514983	5134	73379											
FGF14	2259	broad.mit.edu	37	chr13	102818770	102818770	+	Intron	DEL	G	-	-													acagacaagtgcagcatagaGgaaaatgccagtcgtctagc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102818770	-	-	102818770	6	5	61	0	1	1	0	1	0	0	0	0	5900	1015	35	0		0	FGF14	13	102818770	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	163875	102818770	12351108	5135	73380											
FGF14	2259	broad.mit.edu	37	chr13	102979028	102979028	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaagggaggggaagggaaGggaagggaagggaagggaag	26	0	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102979028	A	A	102979028	1	1	61	0	1	0	0	0	0	0	0	0	5900	1015	35	4		4	FGF14	13	102979028	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	160258	102979028	12190850	5136	73381											
KDELC1	79070	broad.mit.edu	37	chr13	103441303	103441303	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaggtacaatacatttcaAaaggacccatgatattggga	8	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103441303	C	C	103441303	1	2	61	0	1	0	0	0	0	0	0	0	8187	29	1	5		5	KDELC1	13	103441303	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	462275	103441303	11728575	5137	73382											
ERCC5	2073	broad.mit.edu	37	chr13	103528302	103528302	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttatgacagccatttgtaatGaatttgtcgcaaagacgtaa	8	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103528302	T	T	103528302	1	4	61	0	1	0	0	0	0	0	0	0	5258	1305	45	3		3	ERCC5	13	103528302	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	86999	103528302	11641576	5138	73383											
SLC10A2	6555	broad.mit.edu	37	chr13	103710780	103710780	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccacctgtggtgttctaggGaagatgctgttttattttta	10	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103710780	A	A	103710780	1	1	61	0	1	0	0	0	0	0	0	0	14487	1189	41	4		4	SLC10A2	13	103710780	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	182478	103710780	11459098	5139	73384											
FAM155A	728215	broad.mit.edu	37	chr13	108099407	108099407	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccgtattgggatttgcatTtgaaaaagtgtttgttcagc	10	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108099407	A	A	108099407	1	1	61	0	1	0	0	0	0	0	0	0	5511	1856	64	5		5	FAM155A	13	108099407	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4388627	108099407	7070471	5140	73385											
FAM155A	728215	broad.mit.edu	37	chr13	108105734	108105734	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcacacccacagggctaAcaccacatggaagccatcaa	7	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108105734	C	C	108105734	1	2	61	0	1	0	0	0	0	0	0	0	5511	58	2	5		5	FAM155A	13	108105734	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6327	108105734	7064144	5141	73386											
FAM155A	728215	broad.mit.edu	37	chr13	108261149	108261149	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagaggtgaacggcatcCtttgaagcaggatcagaccc	13	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108261149	T	T	108261149	1	4	61	0	1	0	0	0	0	0	0	0	5511	696	24	4		4	FAM155A	13	108261149	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	155415	108261149	6908729	5142	73387											
MYO16	23026	broad.mit.edu	37	chr13	109472791	109472791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatccttggaccattgagCaggtactgttttcttccttt	8	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109472791	A	A	109472791	1	1	61	0	1	0	0	0	0	0	0	0	10158	725	25	3		3	MYO16	13	109472791	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1211642	109472791	5697087	5143	73388											
MYO16	23026	broad.mit.edu	37	chr13	109475610	109475610	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcattcacgatcttcccGtactgtcgagtaagctgtaa	8	10	3	1	rs405397	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109475610	T	T	109475610	3	4	61	1	0	0	0	0	1	0	0	0	10158	1145	40	3	1045	3	MYO16	13	109475610	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2819	109475610	5694268	5144	73389											
MYO16	23026	broad.mit.edu	37	chr13	109507876	109507876	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgctctatgagattcagaAgcgctttgggaacaatcaga	10	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109507876	T	T	109507876	3	4	61	1	0	0	0	0	1	0	0	0	10158	72	3	5	1306	5	MYO16	13	109507876	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	32266	109507876	5662002	5145	73390											
MYO16	23026	broad.mit.edu	37	chr13	109550584	109550584	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtatgaatcaatgctgGgagagaaaacctattcttca	9	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109550584	A	A	109550584	1	1	61	0	1	0	0	0	0	0	0	0	10158	1247	43	4		4	MYO16	13	109550584	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42708	109550584	5619294	5146	73391											
MYO16	23026	broad.mit.edu	37	chr13	109817472	109817472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtatcaactttctgggaGgaatggatttaaaatatgaa	10	4	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109817472	T	T	109817472	1	4	61	0	1	0	0	0	0	0	0	0	10158	1015	35	2		2	MYO16	13	109817472	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	266888	109817472	5352406	5147	73392											
COL4A1	1282	broad.mit.edu	37	chr13	110807605	110807605	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggggctcttcccgggaaAtatggcgtctccccagacac	12	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110807605	C	C	110807605	1	2	61	0	1	0	0	0	0	0	0	0	3721	116	4	5		5	COL4A1	13	110807605	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	990133	110807605	4362273	5148	73393											
COL4A1	1282	broad.mit.edu	37	chr13	110822021	110822021	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgggccctgggacaccGggtgctcctggccagcctgg	15	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110822021	T	T	110822021	2	4	61	1	0	0	0	0	0	0	0	1	3721	1103	39	1		1	COL4A1	13	110822021	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14416	110822021	4347857	5149	73394											
COL4A1	1282	broad.mit.edu	37	chr13	110838702	110838702	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacctccgtttacaacttcAtgctgcatcacgagtttctc	5	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110838702	G	G	110838702	1	3	61	0	1	0	0	0	0	0	0	0	3721	232	8	5		5	COL4A1	13	110838702	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	16681	110838702	4331176	5150	73395											
COL4A2	1284	broad.mit.edu	37	chr13	111008128	111008128	+	Intron	DEL	T	-	-													agctcacctgtgtgtgggggTggagggctgtacagctcacc					rs67063831		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111008128	-	-	111008128	6	5	61	0	1	1	0	1	0	0	0	0	3722	1711	59	0		0	COL4A2	13	111008128	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	169426	111008128	4161750	5151	73396											
COL4A2	1284	broad.mit.edu	37	chr13	111143618	111143618	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagagaagggaacagaaggtGacatcggcttccctgggata	15	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111143618	T	T	111143618	3	4	61	1	0	0	0	0	1	0	0	0	3722	1290	45	3	3527	3	COL4A2	13	111143618	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	135490	111143618	4026260	5152	73397											
CARKD	55739	broad.mit.edu	37	chr13	111289371	111289371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcctcaggctgctcctGgagggtgtggctctgcctgc	16	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111289371	T	T	111289371	1	4	61	0	1	0	0	0	0	0	0	0	2680	1363	47	2		2	CARKD	13	111289371	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	145753	111289371	3880507	5153	73398											
ATP11A	23250	broad.mit.edu	37	chr13	113526215	113526215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattataactctgtactgaGgctggaagccactctccacc	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113526215	T	T	113526215	1	4	61	0	1	0	0	0	0	0	0	0	1123	1015	35	2		2	ATP11A	13	113526215	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2236844	113526215	1643663	5154	73399											
ATP11A	23250	broad.mit.edu	37	chr13	113527471	113527471	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggctttgtcttcctgaGtggtgtgaggtgtggctttg	17	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113527471	A	A	113527471	1	1	61	0	1	0	0	0	0	0	0	0	1123	1044	36	4		4	ATP11A	13	113527471	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1256	113527471	1642407	5155	73400											
LAMP1	3916	broad.mit.edu	37	chr13	113960865	113960865	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacgggaccgcgtgcataAtggccaacttctctgctgcc	11	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113960865	G	G	113960865	3	3	61	1	0	0	0	0	1	0	0	0	8689	101	4	5	133	5	LAMP1	13	113960865	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	433394	113960865	1209013	5156	73401											
LAMP1	3916	broad.mit.edu	37	chr13	113975666	113975666	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaatctactggggttaaaGatcatctttctatgaatctg	9	6	5	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113975666	A	A	113975666	1	1	61	0	1	0	0	0	0	0	0	0	8689	957	33	4		4	LAMP1	13	113975666	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14801	113975666	1194212	5157	73402											
TFDP1	7027	broad.mit.edu	37	chr13	114294377	114294377	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccacaagccctgaggcGgggggaggctgggtgggccg	20	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114294377	C	C	114294377	1	2	61	0	1	0	0	0	0	0	0	0	15920	1131	39	4		4	TFDP1	13	114294377	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	318711	114294377	875501	5158	73403											
RASA3	22821	broad.mit.edu	37	chr13	114786936	114786936	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgggatccttagttctccCaggaattcatctccaaactt	6	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114786936	A	A	114786936	2	1	61	1	0	0	0	0	0	0	0	1	13170	581	21	2		2	RASA3	13	114786936	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	492559	114786936	382942	5159	73404											
RASA3	22821	broad.mit.edu	37	chr13	114839306	114839306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagagggaaggtttttgGcttcacctaaaaagtaaaag	12	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114839306	T	T	114839306	3	4	61	1	0	0	0	0	1	0	0	0	13170	1203	42	3	2534	3	RASA3	13	114839306	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	52370	114839306	330572	5160	73405											
CDC16	8881	broad.mit.edu	37	chr13	115016178	115016178	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcaaactcatcaaactccAtgaagggatgtttttcctaa	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115016178	T	T	115016178	1	4	61	0	1	0	0	0	0	0	0	0	3088	232	8	5		5	CDC16	13	115016178	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	176872	115016178	153700	5161	73406											
POTEG	404785	broad.mit.edu	37	chr14	19563531	19563531	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagagtatgctgtttctagtCatcataatgtgtaagtgttt	10	4	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19563531	A	A	19563531	3	1	61	1	0	0	0	0	1	0	0	0	12362	826	29	3	1063	3	POTEG	14	19563531	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08		19563531	87786009	5162	73407											
POTEG	404785	broad.mit.edu	37	chr14	19566127	19566127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaggttagttttccccaaCctttttggcaccagggaccg	9	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19566127	A	A	19566127	1	1	61	0	1	0	0	0	0	0	0	0	12362	522	18	3		3	POTEG	14	19566127	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2596	19566127	87783413	5163	73408											
OR4Q3	441669	broad.mit.edu	37	chr14	20212664	20212664	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagaaagaagagagaccaGctgcttagctgtacacaagt	10	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20212664	T	T	20212664	1	4	61	0	1	0	0	0	0	0	0	0	11175	986	34	3		3	OR4Q3	14	20212664	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	646537	20212664	87136876	5164	73409											
OR4Q3	441669	broad.mit.edu	37	chr14	20214152	20214152	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggcttgagtcccaaatctCtctctcactggcttatcttg	8	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20214152	G	G	20214152	1	3	61	0	1	0	0	0	0	0	0	0	11175	928	32	4		4	OR4Q3	14	20214152	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1488	20214152	87135388	5165	73410											
OR4Q3	441669	broad.mit.edu	37	chr14	20216351	20216351	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgatcttcgtgccatgCgtattcatctatttgaggcc	9	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20216351	T	T	20216351	2	4	61	1	0	0	0	0	0	0	0	1	11175	776	27	4		4	OR4Q3	14	20216351	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2199	20216351	87133189	5166	73411											
OR4M1	441670	broad.mit.edu	37	chr14	20248317	20248317	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttctctttcttggtttatCaaatataaaatgggcaacca	5	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20248317	G	G	20248317	1	3	61	0	1	0	0	0	0	0	0	0	11169	841	29	4		4	OR4M1	14	20248317	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31966	20248317	87101223	5167	73412											
OR4M1	441670	broad.mit.edu	37	chr14	20248670	20248670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctatgtatttcctgttGgctaatctggccctccttga	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20248670	T	T	20248670	3	4	61	1	0	0	0	0	1	0	0	0	11169	1339	47	2	191	2	OR4M1	14	20248670	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	353	20248670	87100870	5168	73413											
OR4M1	441670	broad.mit.edu	37	chr14	20248915	20248915	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtctctgctgtatcctggTggctctctcctggatggggg	14	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20248915	G	G	20248915	3	3	61	1	0	0	0	0	1	0	0	0	11169	1696	59	5	436	5	OR4M1	14	20248915	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	245	20248915	87100625	5169	73414											
OR4M1	441670	broad.mit.edu	37	chr14	20249016	20249016	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgagttagacagttacttcTgtgacatcacacaggttgtc	9	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20249016	A	A	20249016	3	1	61	1	0	0	0	0	1	0	0	0	11169	1580	55	5	537	5	OR4M1	14	20249016	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	101	20249016	87100524	5170	73415											
OR4N2	390429	broad.mit.edu	37	chr14	20295925	20295925	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctctttttcttgcacttCcttggaggaggggagggatt	13	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20295925	T	T	20295925	2	4	61	1	0	0	0	0	0	0	0	1	11171	854	30	4		4	OR4N2	14	20295925	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	46909	20295925	87053615	5171	73416											
OR4K5	79317	broad.mit.edu	37	chr14	20387707	20387707	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacatacgatgcaaattTttagatattttcaagagcat	5	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20387707	G	G	20387707	1	3	61	0	1	0	0	0	0	0	0	0	11167	1856	64	5		5	OR4K5	14	20387707	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	91782	20387707	86961833	5172	73417											
OR4K5	79317	broad.mit.edu	37	chr14	20389640	20389640	+	Frame_Shift_Del	DEL	G	-	-													tatttatacactaaggaataGggatatgaaggctgccgtaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20389640	-	-	20389640	7	5	61	1	0	1	0	1	0	0	0	0	11167	1000	35	0	877	0	OR4K5	14	20389640	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	1933	20389640	86959900	5173	73418											
OR4K15	81127	broad.mit.edu	37	chr14	20444296	20444296	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttttttctgtgaccttcctCtagtgaccaagttagcctgc	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20444296	A	A	20444296	3	1	61	1	0	0	0	0	1	0	0	0	11164	912	32	3	621	3	OR4K15	14	20444296	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	54656	20444296	86905244	5174	73419											
OR4K17	390436	broad.mit.edu	37	chr14	20585586	20585586	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggctctttatttttcactCatactccatggtatgagtga	7	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20585586	T	T	20585586	2	4	61	1	0	0	0	0	0	0	0	1	11165	813	29	4		4	OR4K17	14	20585586	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	141290	20585586	86763954	5175	73420											
OR4N5	390437	broad.mit.edu	37	chr14	20611880	20611880	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttgccctattttattctGcagagtgagaaattatggaa	8	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20611880	A	A	20611880	1	1	61	0	1	0	0	0	0	0	0	0	11173	1334	46	4		4	OR4N5	14	20611880	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26294	20611880	86737660	5176	73421											
OR4N5	390437	broad.mit.edu	37	chr14	20612013	20612013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctaccttatcatcctccCtggaaatttcctcatcattt	2	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612013	A	A	20612013	3	1	61	1	0	0	0	0	1	0	0	0	11173	681	24	2	121	2	OR4N5	14	20612013	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	133	20612013	86737527	5177	73422											
OR11G2	390439	broad.mit.edu	37	chr14	20665805	20665805	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacatcctgctcgccaactTctccttcttggagatatgtt	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20665805	G	G	20665805	3	3	61	1	0	0	0	0	1	0	0	0	11019	1783	62	5	313	5	OR11G2	14	20665805	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	53792	20665805	86683735	5178	73423											
OR11H6	122748	broad.mit.edu	37	chr14	20691979	20691979	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcctgggtttccatggTcaaagggagatgcagagctg	14	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20691979	C	C	20691979	2	2	61	1	0	0	0	0	0	0	0	1	11023	1654	58	5		5	OR11H6	14	20691979	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	26174	20691979	86657561	5179	73424											
TEP1	7011	broad.mit.edu	37	chr14	20872975	20872975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatctcagtcactcctccCgtagctttctgccctgaaat	6	14	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20872975	A	A	20872975	1	1	61	0	1	0	0	0	0	0	0	0	15881	667	23	1		1	TEP1	14	20872975	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	180996	20872975	86476565	5180	73425											
TMEM55B	90809	broad.mit.edu	37	chr14	20926799	20926799	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaacacagcacagccaacagGatgacaaatgcccaggctgc	9	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20926799	A	A	20926799	2	1	61	1	0	0	0	0	0	0	0	1	16305	1164	41	4		4	TMEM55B	14	20926799	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	53824	20926799	86422741	5181	73426											
TMEM55B	90809	broad.mit.edu	37	chr14	20929045	20929045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctgggatcacttacacCcccactgatgctccacggtg	11	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20929045	T	T	20929045	1	4	61	0	1	0	0	0	0	0	0	0	16305	638	22	4		4	TMEM55B	14	20929045	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2246	20929045	86420495	5182	73427											
RNASE10	338879	broad.mit.edu	37	chr14	20978700	20978700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcctggggatgggcctgGggttgggacttcatatggct	19	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20978700	T	T	20978700	3	4	61	1	0	0	0	0	1	0	0	0	13511	1232	43	2	72	2	RNASE10	14	20978700	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49655	20978700	86370840	5183	73428											
RNASE9	390443	broad.mit.edu	37	chr14	21025342	21025342	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctgttctgggctctaAgattttggaccatttttaaa	9	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21025342	C	C	21025342	1	2	61	0	1	0	0	0	0	0	0	0	13521	87	3	5		5	RNASE9	14	21025342	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	46642	21025342	86324198	5184	73429											
METT11D1	64745	broad.mit.edu	37	chr14	21462040	21462041	+	Intron	INS	-	G	G													cataacactctcttttcccaINSggggtggggttgggtgtaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21462041	G	G	21462040	6	5	61	0	1	1	1	0	0	0	0	0	9584	203	7	0		0	METT11D1	14	21462040	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	436698	21462040	85887500	5185	73430											
SLC39A2	29986	broad.mit.edu	37	chr14	21467673	21467673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctcactctgggctgtgGccttactcccatctgcttca	9	15	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21467673	T	T	21467673	3	4	61	1	0	0	0	0	1	0	0	0	14732	1203	42	3	70	3	SLC39A2	14	21467673	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5633	21467673	85881867	5186	73431											
TPPP2	122664	broad.mit.edu	37	chr14	21498370	21498372	+	5'UTR	DEL	CTC	-	-													cttccctctcctccctctgtCtcctcattgccacagccaac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21498372	-	-	21498370	6	5	61	0	1	1	0	1	0	0	0	0	16538	928	32	0		0	TPPP2	14	21498370	5'UTR	DEL	CTC	TCGA-17-Z031-01A-01W-0746-08	30697	21498370	85851170	5187	73432											
NDRG2	57447	broad.mit.edu	37	chr14	21510765	21510765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagtgatgttggggatGgaggcaaaaaatgaaaaaga	17	1	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21510765	T	T	21510765	1	4	61	0	1	0	0	0	0	0	0	0	10347	1363	47	2		2	NDRG2	14	21510765	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12395	21510765	85838775	5188	73433											
NDRG2	57447	broad.mit.edu	37	chr14	21510991	21510991	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggatgtggacacacagaAgaagaggcagagatgagaca	15	5	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21510991	C	C	21510991	1	2	61	0	1	0	0	0	0	0	0	0	10347	87	3	5		5	NDRG2	14	21510991	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	226	21510991	85838549	5189	73434											
FLJ10357	55701	broad.mit.edu	37	chr14	21546993	21546993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggcacggaaggacagaatTgaggggctcaacaagggaaa	16	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21546993	A	A	21546993	1	1	61	0	1	0	0	0	0	0	0	0	5983	1827	63	5		5	FLJ10357	14	21546993	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	36002	21546993	85802547	5190	73435											
TOX4	9878	broad.mit.edu	37	chr14	21945287	21945287	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccaaactccagggggcgAtagcccagcgcctgactctc	10	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21945287	G	G	21945287	1	3	61	0	1	0	0	0	0	0	0	0	16504	348	12	5		5	TOX4	14	21945287	5'Flank	SNP	A	TCGA-17-Z031-01A-01W-0746-08	398294	21945287	85404253	5191	73436											
OR10G2	26534	broad.mit.edu	37	chr14	22102412	22102412	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagctcattgacagttgtgTcagcacaggccagtctcaat	9	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22102412	C	C	22102412	3	2	61	1	0	0	0	0	1	0	0	0	10993	1667	58	5	348	5	OR10G2	14	22102412	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	157125	22102412	85247128	5192	73437											
OR4E2	26686	broad.mit.edu	37	chr14	22134197	22134197	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaaagtgccatgaagcagCtcaggcagagacaagttttt	10	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22134197	G	G	22134197	3	3	61	1	0	0	0	0	1	0	0	0	11154	797	28	4	903	4	OR4E2	14	22134197	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31785	22134197	85215343	5193	73438											
HOMEZ	57594	broad.mit.edu	37	chr14	23746319	23746319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggaggcagatgagccCcgctggtgaactactgagac	16	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23746319	A	A	23746319	3	1	61	1	0	0	0	0	1	0	0	0	7348	623	22	2	1538	2	HOMEZ	14	23746319	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1612122	23746319	83603221	5194	73439											
CMTM5	116173	broad.mit.edu	37	chr14	23847948	23847948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactcagcaaaggtccagcCccagccctggcctggcttga	10	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847948	A	A	23847948	3	1	61	1	0	0	0	0	1	0	0	0	3618	638	22	2		2	CMTM5	14	23847948	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	101629	23847948	83501592	5195	73440											
MYH6	4624	broad.mit.edu	37	chr14	23851757	23851757	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaacttggacaggttggtGttggcttgctcctcctgtgg	15	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23851757	A	A	23851757	2	1	61	1	0	0	0	0	0	0	0	1	10132	1368	48	4		4	MYH6	14	23851757	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3809	23851757	83497783	5196	73441											
MYH6	4624	broad.mit.edu	37	chr14	23858206	23858206	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcctcgtactgctccCgcagcaggtcgcagtcatgc	9	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23858206	G	G	23858206	3	3	61	1	0	0	0	0	1	0	0	0	10132	652	23	4	1826	4	MYH6	14	23858206	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6449	23858206	83491334	5197	73442											
MYH6	4624	broad.mit.edu	37	chr14	23872387	23872387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcgagaggagacgcagGtggtcttgggagggaagcga	22	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23872387	T	T	23872387	1	4	61	0	1	0	0	0	0	0	0	0	10132	1276	44	3		3	MYH6	14	23872387	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14181	23872387	83477153	5198	73443											
MYH6	4624	broad.mit.edu	37	chr14	23876119	23876119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcatgtcctggcatcccCactggccttggcttttctcc	10	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23876119	A	A	23876119	1	1	61	0	1	0	0	0	0	0	0	0	10132	609	21	2		2	MYH6	14	23876119	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3732	23876119	83473421	5199	73444											
LRRC16B	90668	broad.mit.edu	37	chr14	24528179	24528179	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgtttttgggcaagaacTtcaatgtcaaggccaagtga	10	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24528179	G	G	24528179	3	3	61	1	0	0	0	0	1	0	0	0	9059	1609	56	5	1629	5	LRRC16B	14	24528179	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	652060	24528179	82821361	5200	73445											
LRRC16B	90668	broad.mit.edu	37	chr14	24528928	24528928	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggcttcctggacatcgcaAgggccctggagaggtgagta	16	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24528928	C	C	24528928	2	2	61	1	0	0	0	0	0	0	0	1	9059	63	3	5		5	LRRC16B	14	24528928	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	749	24528928	82820612	5201	73446											
RABGGTA	5875	broad.mit.edu	37	chr14	24738528	24738528	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagttttatcttccccatCagacacttaagcttccttca	4	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24738528	T	T	24738528	1	4	61	0	1	0	0	0	0	0	0	0	13075	841	29	4		4	RABGGTA	14	24738528	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	209600	24738528	82611012	5202	73447											
ADCY4	196883	broad.mit.edu	37	chr14	24791135	24791135	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctaagatgttgtgaaaaCaaagacgcttgacaagcaca	8	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24791135	T	T	24791135	1	4	61	0	1	0	0	0	0	0	0	0	296	493	17	4		4	ADCY4	14	24791135	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	52607	24791135	82558405	5203	73448											
ADCY4	196883	broad.mit.edu	37	chr14	24791486	24791486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggggaagcccagctcCtgagtgttcagccccaactc	12	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24791486	A	A	24791486	1	1	61	0	1	0	0	0	0	0	0	0	296	696	24	2		2	ADCY4	14	24791486	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	351	24791486	82558054	5204	73449											
ADCY4	196883	broad.mit.edu	37	chr14	24794888	24794888	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacagagtgactttcctttaGagagaggcacaagctcctca	9	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24794888	C	C	24794888	1	2	61	0	1	0	0	0	0	0	0	0	296	957	33	4		4	ADCY4	14	24794888	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3402	24794888	82554652	5205	73450											
ADCY4	196883	broad.mit.edu	37	chr14	24798698	24798698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctccacagcataagccCctgccagcagggccagggta	11	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24798698	A	A	24798698	3	1	61	1	0	0	0	0	1	0	0	0	296	623	22	2	2042	2	ADCY4	14	24798698	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3810	24798698	82550842	5206	73451											
NFATC4	4776	broad.mit.edu	37	chr14	24842929	24842929	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcgcgggaatcctgaagcttCggaattcagacattgagctt	12	9	1	3	rs140124494		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24842929	G	G	24842929	3	3	61	1	0	0	0	0	1	0	0	0	10460	875	31	4	1799	4	NFATC4	14	24842929	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44231	24842929	82506611	5207	73452											
NFATC4	4776	broad.mit.edu	37	chr14	24846974	24846974	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagccctgccccctttccctCcttcctggagtggtggctac	9	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24846974	T	T	24846974	1	4	61	0	1	0	0	0	0	0	0	0	10460	870	30	4		4	NFATC4	14	24846974	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4045	24846974	82502566	5208	73453											
NYNRIN	57523	broad.mit.edu	37	chr14	24878083	24878083	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgggccattgtggccGggggctattgctgcaacctt	14	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24878083	T	T	24878083	2	4	61	1	0	0	0	0	0	0	0	1	10891	1103	39	1		1	NYNRIN	14	24878083	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31109	24878083	82471457	5209	73454											
NYNRIN	57523	broad.mit.edu	37	chr14	24879320	24879320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccagaggtaccacgagGccctgaatacacccttcgag	10	14	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24879320	T	T	24879320	3	4	61	1	0	0	0	0	1	0	0	0	10891	1203	42	3	2330	3	NYNRIN	14	24879320	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1237	24879320	82470220	5210	73455											
NYNRIN	57523	broad.mit.edu	37	chr14	24880095	24880095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacacacacacatgcacgcGcacacacacagagtttctgg	7	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24880095	T	T	24880095	1	4	61	0	1	0	0	0	0	0	0	0	10891	1102	38	3		3	NYNRIN	14	24880095	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	775	24880095	82469445	5211	73456											
FOXG1	2290	broad.mit.edu	37	chr14	29237250	29237250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgggcaagggcaactactgGatgctggacccgtcgagcga	15	12	0	0	rs121913678		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29237250	T	T	29237250	3	4	61	1	0	0	0	0	1	0	0	0	6067	1183	41	3	767	3	FOXG1	14	29237250	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4357155	29237250	78112290	5212	73457											
FOXG1	2290	broad.mit.edu	37	chr14	29237821	29237821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctcctccacgtcgccgCaggccccctcgaccctgccc	8	24	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237821	A	A	29237821	3	1	61	1	0	0	0	0	1	0	0	0	6067	711	25	3	1338	3	FOXG1	14	29237821	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	571	29237821	78111719	5213	73458											
FOXG1	2290	broad.mit.edu	37	chr14	29237837	29237837	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgcaggccccctcgacccTgccctgtgagtctttaagac	10	17	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237837	A	A	29237837	3	1	61	1	0	0	0	0	1	0	0	0	6067	1580	55	5	1354	5	FOXG1	14	29237837	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16	29237837	78111703	5214	73459											
PRKD1	5587	broad.mit.edu	37	chr14	30324440	30324440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacactcaatgtcggcCcatgaaaacagccaggaggg	10	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30324440	A	A	30324440	1	1	61	0	1	0	0	0	0	0	0	0	12624	638	22	2		2	PRKD1	14	30324440	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1086603	30324440	77025100	5215	73460											
PRKD1	5587	broad.mit.edu	37	chr14	30346066	30346066	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggaaatggaaattaaaaCcacaaggagagtcgagcatg	12	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30346066	A	A	30346066	1	1	61	0	1	0	0	0	0	0	0	0	12624	522	18	3		3	PRKD1	14	30346066	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21626	30346066	77003474	5216	73461											
STRN3	29966	broad.mit.edu	37	chr14	31405897	31405897	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctaatatttctttctggttCccattttaaatcaattctta	2	8	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31405897	G	G	31405897	1	3	61	0	1	0	0	0	0	0	0	0	15448	870	30	4		4	STRN3	14	31405897	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1059831	31405897	75943643	5217	73462											
AKAP6	9472	broad.mit.edu	37	chr14	32834587	32834588	+	Intron	INS	-	AC	AC													tttgtacagcattggcaggaINSacttgccatccaaggtgtct					rs140800805	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	32834588	AC	AC	32834587	6	5	61	0	1	1	1	0	0	0	0	0	455	261	9	0		0	AKAP6	14	32834587	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1428690	32834587	74514953	5218	73463											
NPAS3	64067	broad.mit.edu	37	chr14	33971833	33971834	+	Intron	INS	-	G	G													ctgcttacccctgttatgaaINSgtagtatttttgtttttctt					rs142821776	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33971834	G	G	33971833	6	5	61	0	1	1	1	0	0	0	0	0	10659	87	3	0		0	NPAS3	14	33971833	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1137246	33971833	73377707	5219	73464											
NPAS3	64067	broad.mit.edu	37	chr14	34177013	34177013	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaaaggcagccccataGgtcagggtgtcgggagaagc	18	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34177013	A	A	34177013	1	1	61	0	1	0	0	0	0	0	0	0	10659	1015	35	4		4	NPAS3	14	34177013	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	205180	34177013	73172527	5220	73465											
NPAS3	64067	broad.mit.edu	37	chr14	34179760	34179760	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcccttacccttttggctgGaaaacgaatggctcagtctc	9	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34179760	A	A	34179760	1	1	61	0	1	0	0	0	0	0	0	0	10659	1189	41	4		4	NPAS3	14	34179760	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2747	34179760	73169780	5221	73466											
RALGAPA1	253959	broad.mit.edu	37	chr14	36169457	36169457	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagcacttttagcactgCgtatataggccgatggcaga	12	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36169457	T	T	36169457	1	4	61	0	1	0	0	0	0	0	0	0	13121	783	27	4		4	RALGAPA1	14	36169457	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1989697	36169457	71180083	5222	73467											
BRMS1L	84312	broad.mit.edu	37	chr14	36334993	36334993	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatttagtctgagttgggaAatattctctttggagacttg	10	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36334993	G	G	36334993	1	3	61	0	1	0	0	0	0	0	0	0	1526	29	1	5		5	BRMS1L	14	36334993	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	165536	36334993	71014547	5223	73468											
SLC25A21	89874	broad.mit.edu	37	chr14	37473668	37473668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtttgaggacacctgggCcaaggttatgtgttaagtca	13	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37473668	A	A	37473668	1	1	61	0	1	0	0	0	0	0	0	0	14598	754	26	3		3	SLC25A21	14	37473668	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1138675	37473668	69875872	5224	73469											
SLC25A21	89874	broad.mit.edu	37	chr14	37641526	37641526	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgccgagaagcctcgcgCactaagctgacttcaggctt	10	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37641526	T	T	37641526	2	4	61	1	0	0	0	0	0	0	0	1	14598	697	25	4		4	SLC25A21	14	37641526	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	167858	37641526	69708014	5225	73470											
MIPOL1	145282	broad.mit.edu	37	chr14	37738133	37738133	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagctttatgtttttgccatAccttgccatcagggtatggt	9	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37738133	T	T	37738133	1	4	61	0	1	0	0	0	0	0	0	0	9686	406	14	5		5	MIPOL1	14	37738133	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	96607	37738133	69611407	5226	73471											
FOXA1	3169	broad.mit.edu	37	chr14	38064152	38064152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtcgctggtttcatgcCcttccatcttcacagttcct	6	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38064152	A	A	38064152	3	1	61	1	0	0	0	0	1	0	0	0	6047	623	22	2	1400	2	FOXA1	14	38064152	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	326019	38064152	69285388	5227	73472											
SEC23A	10484	broad.mit.edu	37	chr14	39514286	39514286	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatatttagtaactatatGcatttttttagttattttca	3	4	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39514286	A	A	39514286	1	1	61	0	1	0	0	0	0	0	0	0	14104	1334	46	4		4	SEC23A	14	39514286	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1450134	39514286	67835254	5228	73473											
SIP1	8487	broad.mit.edu	37	chr14	39583497	39583497	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtacgcctgcgctgtgacCtagaatgggcgcatgcgccg	14	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39583497	A	A	39583497	1	1	61	0	1	0	0	0	0	0	0	0	14440	696	24	2		2	SIP1	14	39583497	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	69211	39583497	67766043	5229	73474											
TRAPPC6B	122553	broad.mit.edu	37	chr14	39626613	39626613	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagcagaggctattggcccGggctgaaaagaaagctgcag	14	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39626613	A	A	39626613	1	1	61	0	1	0	0	0	0	0	0	0	16588	1131	39	4		4	TRAPPC6B	14	39626613	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43116	39626613	67722927	5230	73475											
CTAGE5	4253	broad.mit.edu	37	chr14	39784077	39784077	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaacaattctgatttctttGaattgatgcaggaatataat	6	4	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39784077	T	T	39784077	1	4	61	0	1	0	0	0	0	0	0	0	4028	1305	45	3		3	CTAGE5	14	39784077	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	157464	39784077	67565463	5231	73476											
FAM179B	23116	broad.mit.edu	37	chr14	45475266	45475266	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacctgccttggtgagatcGccatcttcccgacgaggtct	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45475266	A	A	45475266	2	1	61	1	0	0	0	0	0	0	0	1	5551	1074	38	4		4	FAM179B	14	45475266	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5691189	45475266	61874274	5232	73477											
FAM179B	23116	broad.mit.edu	37	chr14	45489148	45489148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggaggggtgacttcagtGtcatcaacatcagagcatgg	14	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45489148	T	T	45489148	1	4	61	0	1	0	0	0	0	0	0	0	5551	1392	48	3		3	FAM179B	14	45489148	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13882	45489148	61860392	5233	73478											
FAM179B	23116	broad.mit.edu	37	chr14	45542447	45542447	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctttttatttagcagagcTtgggcttatttattaagaaa	8	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45542447	G	G	45542447	1	3	61	0	1	0	0	0	0	0	0	0	5551	1624	56	5		5	FAM179B	14	45542447	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	53299	45542447	61807093	5234	73479											
RPL10L	140801	broad.mit.edu	37	chr14	47120603	47120603	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcacctcgcatacctgTctggagcctgtcagccccag	10	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47120603	C	C	47120603	3	2	61	1	0	0	0	0	1	0	0	0	13667	1667	58	5	311	5	RPL10L	14	47120603	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1578156	47120603	60228937	5235	73480											
MDGA2	161357	broad.mit.edu	37	chr14	47311278	47311278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaataataagcattccacGtagctactaacacaaccttg	5	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47311278	T	T	47311278	1	4	61	0	1	0	0	0	0	0	0	0	9500	1160	40	3		3	MDGA2	14	47311278	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	190675	47311278	60038262	5236	73481											
MDGA2	161357	broad.mit.edu	37	chr14	47426535	47426535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtctaagatctcttggtctAataaaacaaaatgtataaaa	6	5	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47426535	T	T	47426535	1	4	61	0	1	0	0	0	0	0	0	0	9500	377	13	5		5	MDGA2	14	47426535	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	115257	47426535	59923005	5237	73482											
MDGA2	161357	broad.mit.edu	37	chr14	47530529	47530529	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatgctacacatgtgtacGtcccaaaatccgtgaatttt	8	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47530529	A	A	47530529	3	1	61	1	0	0	0	0	1	0	0	0	9500	1145	40	4	1673	4	MDGA2	14	47530529	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	103994	47530529	59819011	5238	73483											
MDGA2	161357	broad.mit.edu	37	chr14	47566402	47566402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacagcatgcattatattGgttcattcaaaaaattaaaa	4	6	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47566402	T	T	47566402	1	4	61	0	1	0	0	0	0	0	0	0	9500	1363	47	2		2	MDGA2	14	47566402	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	35873	47566402	59783138	5239	73484											
MDGA2	161357	broad.mit.edu	37	chr14	47571764	47571765	+	Intron	INS	-	T	T													attgaagaagcagaaaagggINScaaaacaaggaaggaagaaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47571765	T	T	47571764	6	5	61	0	1	1	1	0	0	0	0	0	9500	1218	42	0		0	MDGA2	14	47571764	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	5362	47571764	59777776	5240	73485											
MDGA2	161357	broad.mit.edu	37	chr14	47573890	47573891	+	Intron	DNP	CC	AA	AA													gacgtgcatgaaatttggtgCcgtgactcagatcgggggac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47573891	AA	AA	47573890	1	1	61	0	1	0	0	0	0	0	0	0	9500	754	26	3		3	MDGA2	14	47573890	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	2126	47573890	59775650	5241	73486											
MDGA2	161357	broad.mit.edu	37	chr14	47600949	47600949	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtctaaacgacaccatcTtatcaggaatattacataca	4	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47600949	C	C	47600949	3	2	61	1	0	0	0	0	1	0	0	0	9500	1609	56	5	2236	5	MDGA2	14	47600949	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27059	47600949	59748591	5242	73487											
KLHDC1	122773	broad.mit.edu	37	chr14	50177066	50177066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcaaccacctacaccacGtgataaactttcctgctggg	9	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50177066	T	T	50177066	3	4	61	1	0	0	0	0	1	0	0	0	8425	1145	40	3	385	3	KLHDC1	14	50177066	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2576117	50177066	57172474	5243	73488											
SDCCAG1	9147	broad.mit.edu	37	chr14	50319395	50319395	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactccccacacgagcctcgTcacttagggtactgtaccta	7	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50319395	C	C	50319395	1	2	61	0	1	0	0	0	0	0	0	0	14070	1682	58	5		5	SDCCAG1	14	50319395	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	142329	50319395	57030145	5244	73489											
C14orf182	283551	broad.mit.edu	37	chr14	50459177	50459177	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagttttgatcgtgaggaGggaagaggcctaggagttgg	18	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50459177	A	A	50459177	1	1	61	0	1	0	0	0	0	0	0	0	1778	1015	35	4		4	C14orf182	14	50459177	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	139782	50459177	56890363	5245	73490											
L2HGDH	79944	broad.mit.edu	37	chr14	50735895	50735895	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctaccggataaatatttcCttttacaagataacattttt	3	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50735895	A	A	50735895	4	1	61	1	0	0	0	0	0	1	0	0	8662	690	24	2	515	2	L2HGDH	14	50735895	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	276718	50735895	56613645	5246	73491											
CDKL1	8814	broad.mit.edu	37	chr14	50845129	50845129	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcttgaaggggctgggccGtgatagtagtaaaatgtaag	15	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50845129	A	A	50845129	3	1	61	1	0	0	0	0	1	0	0	0	3183	1160	40	4		4	CDKL1	14	50845129	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	109234	50845129	56504411	5247	73492											
ABHD12B	145447	broad.mit.edu	37	chr14	51355443	51355443	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacaaataattttgatgcaCgtagctcatgtacaagatct	6	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51355443	G	G	51355443	1	3	61	0	1	0	0	0	0	0	0	0	77	551	19	4		4	ABHD12B	14	51355443	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	510314	51355443	55994097	5248	73493											
PYGL	5836	broad.mit.edu	37	chr14	51382319	51382319	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctttggtgtactcaataTaaacttcactaccacaggga	6	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51382319	A	A	51382319	1	1	61	0	1	0	0	0	0	0	0	0	12969	1421	49	5		5	PYGL	14	51382319	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	26876	51382319	55967221	5249	73494											
TRIM9	114088	broad.mit.edu	37	chr14	51561429	51561429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccccgtaggagccatagcCgctgtccgcctcgctgtata	10	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51561429	A	A	51561429	3	1	61	1	0	0	0	0	1	0	0	0	16674	652	23	1	1993	1	TRIM9	14	51561429	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	179110	51561429	55788111	5250	73495											
GNG2	54331	broad.mit.edu	37	chr14	52418705	52418705	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccaattaccgaaccacacCcaaaccaattaaattagaat	3	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52418705	G	G	52418705	1	3	61	0	1	0	0	0	0	0	0	0	6591	638	22	4		4	GNG2	14	52418705	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	857276	52418705	54930835	5251	73496											
C14orf166	51637	broad.mit.edu	37	chr14	52458077	52458077	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcgtttggcttgaagaccAgaaaatcaggcactacaaga	9	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52458077	G	G	52458077	3	3	61	1	0	0	0	0	1	0	0	0	1769	188	7	5	110	5	C14orf166	14	52458077	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	39372	52458077	54891463	5252	73497											
NID2	22795	broad.mit.edu	37	chr14	52486851	52486851	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaccaggagtattgtagCaggtagctgcagggtgacat	15	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52486851	T	T	52486851	3	4	61	1	0	0	0	0	1	0	0	0	10510	710	25	4	1447	4	NID2	14	52486851	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28774	52486851	54862689	5253	73498											
NID2	22795	broad.mit.edu	37	chr14	52495615	52495615	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcttaattcaagggtccCagaagtggagggtctaaaaa	11	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52495615	T	T	52495615	1	4	61	0	1	0	0	0	0	0	0	0	10510	609	21	4		4	NID2	14	52495615	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8764	52495615	54853925	5254	73499											
NID2	22795	broad.mit.edu	37	chr14	52520549	52520549	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctctggtggagctgggcTtctggtctctctctcatccc	10	14	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52520549	G	G	52520549	3	3	61	1	0	0	0	0	1	0	0	0	10510	1609	56	5	3022	5	NID2	14	52520549	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	24934	52520549	54828991	5255	73500											
GCH1	2643	broad.mit.edu	37	chr14	55310842	55310842	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcattttctgtacacctcGcattaccatacacatgtgtc	5	12	2	0	rs41298440		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55310842	C	C	55310842	3	2	61	1	0	0	0	0	1	0	0	0	6353	1095	38	4	210	4	GCH1	14	55310842	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2790293	55310842	52038698	5256	73501											
ARID4A	5926	broad.mit.edu	37	chr14	58817917	58817917	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgatgactatgaaactgcaGagaaaaaagaaaatgagcta	9	4	0	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58817917	T	T	58817917	4	4	61	1	0	0	0	0	0	1	0	0	921	943	33	3	1589	3	ARID4A	14	58817917	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3507075	58817917	48531623	5257	73502											
KIAA0586	9786	broad.mit.edu	37	chr14	58939067	58939067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggttgttgactatctttGgactatcaatattatgttac	7	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58939067	T	T	58939067	1	4	61	0	1	0	0	0	0	0	0	0	8256	1363	47	2		2	KIAA0586	14	58939067	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	121150	58939067	48410473	5258	73503											
C14orf149	112849	broad.mit.edu	37	chr14	59939672	59939672	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaagaaagcccttaaaatCatggaagaagtcacttgaga	8	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59939672	G	G	59939672	1	3	61	0	1	0	0	0	0	0	0	0	1765	841	29	4		4	C14orf149	14	59939672	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1000605	59939672	47409868	5259	73504											
RTN1	6252	broad.mit.edu	37	chr14	60072317	60072317	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctaagcgttcctactctcActctgagggtgagagcagga	12	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60072317	T	T	60072317	1	4	61	0	1	0	0	0	0	0	0	0	13836	174	6	5		5	RTN1	14	60072317	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	132645	60072317	47277223	5260	73505											
DHRS7	51635	broad.mit.edu	37	chr14	60619815	60619815	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctaagtagttaagctctaTtagctttctgtagacatcca	6	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60619815	C	C	60619815	3	2	61	1	0	0	0	0	1	0	0	0	4535	1493	52	5	560	5	DHRS7	14	60619815	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	547498	60619815	46729725	5261	73506											
SLC38A6	145389	broad.mit.edu	37	chr14	61512086	61512086	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttatgccttaccaaccaTggctttttcatttctctgcc	5	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61512086	G	G	61512086	3	3	61	1	0	0	0	0	1	0	0	0	14722	1464	51	5	809	5	SLC38A6	14	61512086	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	892271	61512086	45837454	5262	73507											
SLC38A6	145389	broad.mit.edu	37	chr14	61518588	61518588	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgatcactctagcactcaaTattatcatcgttttacttgc	4	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61518588	A	A	61518588	3	1	61	1	0	0	0	0	1	0	0	0	14722	1403	49	5	1188	5	SLC38A6	14	61518588	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6502	61518588	45830952	5263	73508											
SNAPC1	6617	broad.mit.edu	37	chr14	62229216	62229216	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagaccgactgcgaggCgctgctcagccgcttccagg	13	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62229216	T	T	62229216	3	4	61	1	0	0	0	0	1	0	0	0	14948	768	27	4	40	4	SNAPC1	14	62229216	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	710628	62229216	45120324	5264	73509											
SYT16	83851	broad.mit.edu	37	chr14	62463151	62463151	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagttaccacatgtgctttcTtctattgcggaggaagagca	10	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62463151	G	G	62463151	2	3	61	1	0	0	0	0	0	0	0	1	15591	1596	56	5		5	SYT16	14	62463151	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	233935	62463151	44886389	5265	73510											
KCNH5	27133	broad.mit.edu	37	chr14	63246267	63246267	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatctttactcatagaaataGggtttttttccttaaaaagt	5	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63246267	C	C	63246267	1	2	61	0	1	0	0	0	0	0	0	0	8105	1015	35	4		4	KCNH5	14	63246267	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	783116	63246267	44103273	5266	73511											
KCNH5	27133	broad.mit.edu	37	chr14	63403950	63403950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaccctcatgttttgctGgtcttaccgtatgtctggaa	8	10	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63403950	T	T	63403950	1	4	61	0	1	0	0	0	0	0	0	0	8105	1363	47	2		2	KCNH5	14	63403950	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	157683	63403950	43945590	5267	73512											
KCNH5	27133	broad.mit.edu	37	chr14	63416862	63416862	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatacttacagccaaccatcAtcatagccaccgaaaacatc	3	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63416862	T	T	63416862	3	4	61	1	0	0	0	0	1	0	0	0	8105	217	8	5	1662	5	KCNH5	14	63416862	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12912	63416862	43932678	5268	73513											
KCNH5	27133	broad.mit.edu	37	chr14	63483528	63483528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatttcagaaaagattaCttagctattctgttacctac	4	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63483528	A	A	63483528	1	1	61	0	1	0	0	0	0	0	0	0	8105	580	20	3		3	KCNH5	14	63483528	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66666	63483528	43866012	5269	73514											
RHOJ	57381	broad.mit.edu	37	chr14	63671892	63671892	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggcagtaaccagggagcTtagcgtagcatacaacccag	11	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63671892	A	A	63671892	1	1	61	0	1	0	0	0	0	0	0	0	13450	1624	56	5		5	RHOJ	14	63671892	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	188364	63671892	43677648	5270	73515											
SYNE2	23224	broad.mit.edu	37	chr14	64476712	64476712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgggagagttttggagCtcttaaaacaatatcagaat	10	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64476712	A	A	64476712	3	1	61	1	0	0	0	0	1	0	0	0	15565	797	28	3	4728	3	SYNE2	14	64476712	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	804820	64476712	42872828	5271	73516											
ESR2	2100	broad.mit.edu	37	chr14	64727411	64727411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcacagtgcagctgctcGtcggcacttctctgtctccg	11	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64727411	T	T	64727411	3	4	61	1	0	0	0	0	1	0	0	0	5299	1136	40	3	990	3	ESR2	14	64727411	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	250699	64727411	42622129	5272	73517											
PLEKHG3	26030	broad.mit.edu	37	chr14	65197269	65197269	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaacaggggacagaggGtgctctgggggccaggggcc	21	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65197269	C	C	65197269	1	2	61	0	1	0	0	0	0	0	0	0	12165	1276	44	4		4	PLEKHG3	14	65197269	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	469858	65197269	42152271	5273	73518											
FAM71D	161142	broad.mit.edu	37	chr14	67666466	67666466	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtggtatcatcattggggtCtgggcttcctccaccaggca	12	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67666466	A	A	67666466	1	1	61	0	1	0	0	0	0	0	0	0	5661	928	32	3		3	FAM71D	14	67666466	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2469197	67666466	39683074	5274	73519											
PLEK2	26499	broad.mit.edu	37	chr14	67862071	67862071	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcccctgcccacccaAcacaggcaggagaggctgcc	12	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67862071	C	C	67862071	1	2	61	0	1	0	0	0	0	0	0	0	12149	58	2	5		5	PLEK2	14	67862071	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	195605	67862071	39487469	5275	73520											
PLEKHH1	57475	broad.mit.edu	37	chr14	68046582	68046582	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggagcactgcctgcagGgaagtgtcaaggtgacagcc	14	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68046582	A	A	68046582	3	1	61	1	0	0	0	0	1	0	0	0	12171	1233	43	4	3254	4	PLEKHH1	14	68046582	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	184511	68046582	39302958	5276	73521											
ZFYVE26	23503	broad.mit.edu	37	chr14	68272117	68272117	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgcattcagcctaagcccGaagccccacgtctctcactt	6	17	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68272117	A	A	68272117	1	1	61	0	1	0	0	0	0	0	0	0	17794	1073	37	4		4	ZFYVE26	14	68272117	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	225535	68272117	39077423	5277	73522											
RAD51L1	5890	broad.mit.edu	37	chr14	68934973	68934973	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctggttcttcaaggtaagAtccttggattaagccatttc	9	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68934973	T	T	68934973	1	4	61	0	1	0	0	0	0	0	0	0	13097	348	12	5		5	RAD51L1	14	68934973	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	662856	68934973	38414567	5278	73523											
ACTN1	87	broad.mit.edu	37	chr14	69376405	69376405	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagagccctgggctgggaCttcctggacaatttccttgg	12	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69376405	T	T	69376405	1	4	61	0	1	0	0	0	0	0	0	0	204	580	20	4		4	ACTN1	14	69376405	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	441432	69376405	37973135	5279	73524											
GALNTL1	57452	broad.mit.edu	37	chr14	69813668	69813668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggagacctcggcgctccCagagctgataggatgctgac	13	13	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69813668	A	A	69813668	1	1	61	0	1	0	0	0	0	0	0	0	6283	609	21	2		2	GALNTL1	14	69813668	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	437263	69813668	37535872	5280	73525											
SFRS5	6430	broad.mit.edu	37	chr14	70198852	70198852	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatccatccatccatccaTccatccatccatccatccac	0	21	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70198852	C	C	70198852	1	2	61	0	1	0	0	0	0	0	0	0	14293	1450	50	5		5	SFRS5	14	70198852	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	385184	70198852	37150688	5281	73526											
SLC8A3	6547	broad.mit.edu	37	chr14	70515901	70515901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagctggtgggggccagGgccagcgtgccagaaaatag	19	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70515901	T	T	70515901	1	4	61	0	1	0	0	0	0	0	0	0	14822	1247	43	2		2	SLC8A3	14	70515901	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	317049	70515901	36833639	5282	73527											
SLC8A3	6547	broad.mit.edu	37	chr14	70532530	70532530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaactcaataagtacaGgtggtgacccaaggggtggt	15	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70532530	T	T	70532530	1	4	61	0	1	0	0	0	0	0	0	0	14822	1015	35	2		2	SLC8A3	14	70532530	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16629	70532530	36817010	5283	73528											
SLC8A3	6547	broad.mit.edu	37	chr14	70542194	70542194	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaactgtgctctggaaaGgtggtgtccagttttctctg	12	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70542194	A	A	70542194	1	1	61	0	1	0	0	0	0	0	0	0	14822	1015	35	4		4	SLC8A3	14	70542194	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9664	70542194	36807346	5284	73529											
SIPA1L1	26037	broad.mit.edu	37	chr14	72165840	72165840	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggcagaagtccatgcccGaagggtagttatgcgtttgt	13	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72165840	T	T	72165840	4	4	61	1	0	0	0	0	0	1	0	0	14442	1059	37	3	3555	3	SIPA1L1	14	72165840	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1623646	72165840	35183700	5285	73530											
SIPA1L1	26037	broad.mit.edu	37	chr14	72171842	72171842	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcagagtttgctggtcaGtgaactgaaagatgcaatgg	13	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72171842	A	A	72171842	1	1	61	0	1	0	0	0	0	0	0	0	14442	1044	36	4		4	SIPA1L1	14	72171842	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6002	72171842	35177698	5286	73531											
SIPA1L1	26037	broad.mit.edu	37	chr14	72201797	72201797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacaaatgtttcttaaagGgaaattacatggctacaatc	6	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72201797	T	T	72201797	1	4	61	0	1	0	0	0	0	0	0	0	14442	1247	43	2		2	SIPA1L1	14	72201797	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29955	72201797	35147743	5287	73532											
RGS6	9628	broad.mit.edu	37	chr14	72510212	72510212	+	Intron	DEL	T	-	-													ttttcttcacttttgaaggaTaactttgctgaatatagaaa					rs11361663		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72510212	-	-	72510212	6	5	61	0	1	1	0	1	0	0	0	0	13418	1421	49	0		0	RGS6	14	72510212	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	308415	72510212	34839328	5288	73533											
RGS6	9628	broad.mit.edu	37	chr14	72831466	72831466	+	Intron	DEL	G	-	-													aaacagcaagtgatttcaatGgaagaaggcaagaagatgga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72831466	-	-	72831466	6	5	61	0	1	1	0	1	0	0	0	0	13418	1363	47	0		0	RGS6	14	72831466	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	321254	72831466	34518074	5289	73534											
DPF3	8110	broad.mit.edu	37	chr14	73353392	73353392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttacacaccagctcctGtgtagactctgatgagttct	8	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73353392	T	T	73353392	1	4	61	0	1	0	0	0	0	0	0	0	4758	1392	48	3		3	DPF3	14	73353392	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	521926	73353392	33996148	5290	73535											
ZFYVE1	53349	broad.mit.edu	37	chr14	73448514	73448514	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacccacagctgaggcacaaGgaggagcaggtgaaatactc	12	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73448514	A	A	73448514	2	1	61	1	0	0	0	0	0	0	0	1	17789	987	35	4		4	ZFYVE1	14	73448514	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	95122	73448514	33901026	5291	73536											
NUMB	8650	broad.mit.edu	37	chr14	73822214	73822214	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaattctatcattgaagcaGaatgtgaagggatttgtttt	9	3	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73822214	T	T	73822214	1	4	61	0	1	0	0	0	0	0	0	0	10846	957	33	3		3	NUMB	14	73822214	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	373700	73822214	33527326	5292	73537											
C14orf43	91748	broad.mit.edu	37	chr14	74204052	74204052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtaagtcatagccaggCgcagtggctcacgcctataa	11	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74204052	A	A	74204052	1	1	61	0	1	0	0	0	0	0	0	0	1787	783	27	3		3	C14orf43	14	74204052	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	381838	74204052	33145488	5293	73538											
COQ6	51004	broad.mit.edu	37	chr14	74422031	74422031	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtactaacatcaaacaagAtagaagtggagagtattatt	9	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74422031	G	G	74422031	1	3	61	0	1	0	0	0	0	0	0	0	3781	348	12	5		5	COQ6	14	74422031	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	217979	74422031	32927509	5294	73539											
C14orf45	80127	broad.mit.edu	37	chr14	74523820	74523820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtgtagagttgttgacGgttctgttattttgtcatta	11	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74523820	T	T	74523820	1	4	61	0	1	0	0	0	0	0	0	0	1788	1131	39	1		1	C14orf45	14	74523820	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	101789	74523820	32825720	5295	73540											
ABCD4	5826	broad.mit.edu	37	chr14	74760070	74760070	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattcaaatgatcttggtctCaggatctgtctactggtagc	9	9	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74760070	A	A	74760070	1	1	61	0	1	0	0	0	0	0	0	0	63	841	29	3		3	ABCD4	14	74760070	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	236250	74760070	32589470	5296	73541											
LTBP2	4053	broad.mit.edu	37	chr14	74969991	74969991	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctggcagcagcattccgTgtaggtggtgcggtgcccac	15	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74969991	G	G	74969991	3	3	61	1	0	0	0	0	1	0	0	0	9161	1696	59	5	662	5	LTBP2	14	74969991	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	209921	74969991	32379549	5297	73542											
KIAA0317	9870	broad.mit.edu	37	chr14	75130730	75130730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgaagtagccgagccaaCtcctcctgggtcagactgga	11	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75130730	A	A	75130730	3	1	61	1	0	0	0	0	1	0	0	0	8237	564	20	3	238	3	KIAA0317	14	75130730	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	160739	75130730	32218810	5298	73543											
PROX2	283571	broad.mit.edu	37	chr14	75329253	75329253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaccaaagagaaaggcaGtgcctccatgacagcatgca	12	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75329253	T	T	75329253	3	4	61	1	0	0	0	0	1	0	0	0	12667	1020	36	3	509	3	PROX2	14	75329253	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	198523	75329253	32020287	5299	73544											
NEK9	91754	broad.mit.edu	37	chr14	75551441	75551441	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacagtgccacctagtcacaGaagtagttcagtactatatt	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75551441	A	A	75551441	1	1	61	0	1	0	0	0	0	0	0	0	10426	957	33	4		4	NEK9	14	75551441	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	222188	75551441	31798099	5300	73545											
TMED10	10972	broad.mit.edu	37	chr14	75618688	75618688	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactgtattaaggagcattaGagttggagaagattcttaat	11	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75618688	C	C	75618688	1	2	61	0	1	0	0	0	0	0	0	0	16126	957	33	4		4	TMED10	14	75618688	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67247	75618688	31730852	5301	73546											
TTLL5	23093	broad.mit.edu	37	chr14	76329864	76329864	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagctacggtttagtgggggAgtgagataatatcacacaag	14	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76329864	T	T	76329864	1	4	61	0	1	0	0	0	0	0	0	0	16856	319	11	5		5	TTLL5	14	76329864	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	711176	76329864	31019676	5302	73547											
ESRRB	2103	broad.mit.edu	37	chr14	76929261	76929261	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggccccagtgggcctggcActctgggaaggccctccttt	14	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76929261	C	C	76929261	1	2	61	0	1	0	0	0	0	0	0	0	5303	174	6	5		5	ESRRB	14	76929261	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	599397	76929261	30420279	5303	73548											
ESRRB	2103	broad.mit.edu	37	chr14	76949017	76949017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccctggtatgcctgaGggggacatcaaggccctgac	12	15	1	2	rs79273904	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76949017	T	T	76949017	3	4	61	1	0	0	0	0	1	0	0	0	5303	991	35	2	716	2	ESRRB	14	76949017	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19756	76949017	30400523	5304	73549											
ZDHHC22	283576	broad.mit.edu	37	chr14	77605928	77605928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaggaataggaagagcgCcccgtggagcagggcgggcg	20	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77605928	A	A	77605928	3	1	61	1	0	0	0	0	1	0	0	0	17739	739	26	3	645	3	ZDHHC22	14	77605928	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	656911	77605928	29743612	5305	73550											
POMT2	29954	broad.mit.edu	37	chr14	77744999	77744999	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtcaaggagcagagtcactCccagcactgctgcccaacag	10	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77744999	A	A	77744999	1	1	61	0	1	0	0	0	0	0	0	0	12341	870	30	3		3	POMT2	14	77744999	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	139071	77744999	29604541	5306	73551											
C14orf148	122945	broad.mit.edu	37	chr14	77888906	77888906	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccacagccaggggaccctGgtatagattttcctgtcctt	9	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77888906	A	A	77888906	1	1	61	0	1	0	0	0	0	0	0	0	1764	1363	47	4		4	C14orf148	14	77888906	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	143907	77888906	29460634	5307	73552											
NRXN3	9369	broad.mit.edu	37	chr14	78997374	78997374	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccctactttcatttattttCtaatctttgatgcctttcct	3	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78997374	G	G	78997374	1	3	61	0	1	0	0	0	0	0	0	0	10762	928	32	4		4	NRXN3	14	78997374	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1108468	78997374	28352166	5308	73553											
NRXN3	9369	broad.mit.edu	37	chr14	79158858	79158858	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggactctttcatgaaaaatCataacagcaagtggttgaat	9	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79158858	A	A	79158858	1	1	61	0	1	0	0	0	0	0	0	0	10762	841	29	3		3	NRXN3	14	79158858	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	161484	79158858	28190682	5309	73554											
NRXN3	9369	broad.mit.edu	37	chr14	79374331	79374331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgttctttttttatgGctgcatagtattccatggtg	9	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79374331	T	T	79374331	1	4	61	0	1	0	0	0	0	0	0	0	10762	1218	42	3		3	NRXN3	14	79374331	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	215473	79374331	27975209	5310	73555											
NRXN3	9369	broad.mit.edu	37	chr14	79454625	79454625	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaacttgggaaataaatGactagtgctcttatgagaag	10	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79454625	T	T	79454625	1	4	61	0	1	0	0	0	0	0	0	0	10762	1305	45	3		3	NRXN3	14	79454625	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	80294	79454625	27894915	5311	73556											
DIO2	1734	broad.mit.edu	37	chr14	80669222	80669222	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgtccatgcggtcagccAcaactcggcactggggcggc	13	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80669222	T	T	80669222	3	4	61	1	0	0	0	0	1	0	0	0	4565	159	6	5	193	5	DIO2	14	80669222	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1214597	80669222	26680318	5312	73557											
DIO2	1734	broad.mit.edu	37	chr14	80677838	80677838	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctgcctcctgagtcagtTcccttgtgcgctctggttcc	9	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80677838	A	A	80677838	1	1	61	0	1	0	0	0	0	0	0	0	4565	1798	62	5		5	DIO2	14	80677838	5'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	8616	80677838	26671702	5313	73558											
TSHR	7253	broad.mit.edu	37	chr14	81594323	81594324	+	Intron	INS	-	A	A													tggtagaatgctgactcaccINSaacttacaggatacggcaat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81594324	A	A	81594323	6	5	61	0	1	1	1	0	0	0	0	0	16747	609	21	0		0	TSHR	14	81594323	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	916485	81594323	25755217	5314	73559											
TSHR	7253	broad.mit.edu	37	chr14	81606050	81606051	+	Missense_Mutation	DNP	CC	AG	AG													tctcaaaccagtgtcactgcCcttccatccaaaggcctgga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	81606051	AG	AG	81606050	3	1	61	1	0	0	0	0	1	0	0	0	16747	610	22	2	891	2	TSHR	14	81606050	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	11727	81606050	25743490	5315	73560											
STON2	85439	broad.mit.edu	37	chr14	81881489	81881489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatgacctgcctcctacCacccctgccctggacccaag	7	21	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81881489	A	A	81881489	1	1	61	0	1	0	0	0	0	0	0	0	15436	609	21	2		2	STON2	14	81881489	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	275439	81881489	25468051	5316	73561											
FLRT2	23768	broad.mit.edu	37	chr14	86088361	86088361	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaattgttgtttttgtctaAgaatcacctgagcagtgtgc	9	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86088361	G	G	86088361	3	3	61	1	0	0	0	0	1	0	0	0	5997	72	3	5	505	5	FLRT2	14	86088361	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4206872	86088361	21261179	5317	73562											
GALC	2581	broad.mit.edu	37	chr14	88322889	88322889	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaacataaagtggcctgccTgacactctcagttacagatt	7	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88322889	A	A	88322889	1	1	61	0	1	0	0	0	0	0	0	0	6263	1595	55	5		5	GALC	14	88322889	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2234528	88322889	19026651	5318	73563											
GALC	2581	broad.mit.edu	37	chr14	88324840	88324840	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaggagaacaacaaaccacGgctcaacgaaaaaaaaagag	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88324840	C	C	88324840	1	2	61	0	1	0	0	0	0	0	0	0	6263	1131	39	4		4	GALC	14	88324840	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1951	88324840	19024700	5319	73564											
GPR65	8477	broad.mit.edu	37	chr14	88478017	88478017	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaatgtatagaatcacgGttgcattaacaagtttaaat	6	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88478017	A	A	88478017	3	1	61	1	0	0	0	0	1	0	0	0	6771	1261	44	4	828	4	GPR65	14	88478017	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	153177	88478017	18871523	5320	73565											
KCNK10	54207	broad.mit.edu	37	chr14	88729606	88729606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcccgcaggaattccgcCttctccaaggcgatggtatt	10	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88729606	A	A	88729606	3	1	61	1	0	0	0	0	1	0	0	0	8129	680	24	2	1313	2	KCNK10	14	88729606	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	251589	88729606	18619934	5321	73566											
KCNK10	54207	broad.mit.edu	37	chr14	88739547	88739547	+	Intron	DEL	G	-	-													aacatttaagggacagcaaaGggagggggatgcatgacaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88739547	-	-	88739547	6	5	61	0	1	1	0	1	0	0	0	0	8129	1015	35	0		0	KCNK10	14	88739547	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	9941	88739547	18609993	5322	73567											
KCNK10	54207	broad.mit.edu	37	chr14	88792682	88792682	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctccctcccaagaaaacTtagccctttgggctactgca	7	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88792682	G	G	88792682	1	3	61	0	1	0	0	0	0	0	0	0	8129	1624	56	5		5	KCNK10	14	88792682	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	53135	88792682	18556858	5323	73568											
SPATA7	55812	broad.mit.edu	37	chr14	88883135	88883135	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaattaactaaaactgcaAtgcgagccaattataaaaat	4	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88883135	G	G	88883135	3	3	61	1	0	0	0	0	1	0	0	0	15130	101	4	5	337	5	SPATA7	14	88883135	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	90453	88883135	18466405	5324	73569											
ZC3H14	79882	broad.mit.edu	37	chr14	89074628	89074628	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcaccctgcaagtgaatAccatcccccatctcaccctg	4	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89074628	G	G	89074628	1	3	61	0	1	0	0	0	0	0	0	0	17692	406	14	5		5	ZC3H14	14	89074628	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	191493	89074628	18274912	5325	73570											
TTC8	123016	broad.mit.edu	37	chr14	89343612	89343613	+	Intron	DNP	TG	AT	AT													ttttttctgatctcattccaTggtcttattcttgtattttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	89343613	AT	AT	89343612	1	1	61	0	1	0	0	0	0	0	0	0	16840	1479	51	5		5	TTC8	14	89343612	Intron	DNP	TG	TCGA-17-Z031-01A-01W-0746-08	268984	89343612	18005928	5326	73571											
FOXN3	1112	broad.mit.edu	37	chr14	90027283	90027283	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaggtagcaattgccAcactcattcctggaccaatt	6	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90027283	T	T	90027283	1	4	61	0	1	0	0	0	0	0	0	0	6081	174	6	5		5	FOXN3	14	90027283	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	683671	90027283	17322257	5327	73572											
CCDC88C	440193	broad.mit.edu	37	chr14	91804492	91804492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagcagaccgggcgtctgCcgctagctggatgttctgca	14	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91804492	A	A	91804492	3	1	61	1	0	0	0	0	1	0	0	0	2893	739	26	3	5263	3	CCDC88C	14	91804492	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1777209	91804492	15545048	5328	73573											
SMEK1	55671	broad.mit.edu	37	chr14	91948454	91948454	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggcaattctaagcctggCgatgacatatcatcaaaacg	9	9	3	1	rs61757451	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91948454	A	A	91948454	2	1	61	1	0	0	0	0	0	0	0	1	14907	755	27	3		3	SMEK1	14	91948454	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	143962	91948454	15401086	5329	73574											
CATSPERB	79820	broad.mit.edu	37	chr14	92139240	92139240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggtaaactccagtacCacgctcttggtcaacaagaa	9	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92139240	A	A	92139240	3	1	61	1	0	0	0	0	1	0	0	0	2717	594	21	2	2311	2	CATSPERB	14	92139240	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	190786	92139240	15210300	5330	73575											
CPSF2	53981	broad.mit.edu	37	chr14	92625723	92625723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccccttctaaaactaagtGggtctgtggaaccttttata	7	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92625723	T	T	92625723	1	4	61	0	1	0	0	0	0	0	0	0	3857	1363	47	2		2	CPSF2	14	92625723	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	486483	92625723	14723817	5331	73576											
SLC24A4	123041	broad.mit.edu	37	chr14	92905839	92905839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaaggccagggctggcGtggggagcatgctggtggca	19	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92905839	T	T	92905839	1	4	61	0	1	0	0	0	0	0	0	0	14582	1160	40	3		3	SLC24A4	14	92905839	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	280116	92905839	14443701	5332	73577											
SLC24A4	123041	broad.mit.edu	37	chr14	92915394	92915394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctttccattgccctgaCctcctgcctcccctcgcttc	4	21	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92915394	A	A	92915394	1	1	61	0	1	0	0	0	0	0	0	0	14582	522	18	3		3	SLC24A4	14	92915394	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9555	92915394	14434146	5333	73578											
RIN3	79890	broad.mit.edu	37	chr14	93106664	93106664	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcgggggctgcctgtgTgtttgctgggagatgcctga	16	8	1	2	rs113820452		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93106664	C	C	93106664	1	2	61	0	1	0	0	0	0	0	0	0	13484	1711	59	5		5	RIN3	14	93106664	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	191270	93106664	14242876	5334	73579											
GOLGA5	9950	broad.mit.edu	37	chr14	93263812	93263812	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgttgatcttgctggaaaGgcagaagatcttttaaaccg	10	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93263812	A	A	93263812	2	1	61	1	0	0	0	0	0	0	0	1	6620	991	35	4		4	GOLGA5	14	93263812	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	157148	93263812	14085728	5335	73580											
GOLGA5	9950	broad.mit.edu	37	chr14	93264439	93264439	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgtctccactggtgtaaGggcagactctctgcaaatgt	10	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93264439	A	A	93264439	1	1	61	0	1	0	0	0	0	0	0	0	6620	1015	35	4		4	GOLGA5	14	93264439	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	627	93264439	14085101	5336	73581											
GOLGA5	9950	broad.mit.edu	37	chr14	93299644	93299644	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaactccgcctctggaagtAgtagtaatgggtcttcgatt	11	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93299644	G	G	93299644	3	3	61	1	0	0	0	0	1	0	0	0	6620	420	15	5	1931	5	GOLGA5	14	93299644	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	35205	93299644	14049896	5337	73582											
GOLGA5	9950	broad.mit.edu	37	chr14	93305735	93305735	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcacctctgggtcatgAttgttctgttgacttacaca	8	10	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93305735	G	G	93305735	3	3	61	1	0	0	0	0	1	0	0	0	6620	333	12	5	2186	5	GOLGA5	14	93305735	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6091	93305735	14043805	5338	73583											
COX8C	341947	broad.mit.edu	37	chr14	93813686	93813686	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctgctcggcctgcagccCgctccccgcttcgcccactc	9	23	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93813686	G	G	93813686	2	3	61	1	0	0	0	0	0	0	0	1	3818	639	23	4		4	COX8C	14	93813686	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	507951	93813686	13535854	5339	73584											
KIAA1409	57578	broad.mit.edu	37	chr14	94039286	94039286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccatgtttgccaagaaaGtgtatctcctatgcatagat	7	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94039286	T	T	94039286	1	4	61	0	1	0	0	0	0	0	0	0	8300	1044	36	3		3	KIAA1409	14	94039286	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	225600	94039286	13310254	5340	73585											
KIAA1409	57578	broad.mit.edu	37	chr14	94041695	94041695	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttaagtgcattaaatagtCacatttgtttggtatagttt	7	3	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94041695	A	A	94041695	1	1	61	0	1	0	0	0	0	0	0	0	8300	841	29	3		3	KIAA1409	14	94041695	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2409	94041695	13307845	5341	73586											
KIAA1409	57578	broad.mit.edu	37	chr14	94088850	94088850	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagtcgtttgctctcccCgagatgtcgctggatgatca	11	11	2	3	rs7160631	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94088850	A	A	94088850	2	1	61	1	0	0	0	0	0	0	0	1	8300	639	23	1		1	KIAA1409	14	94088850	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47155	94088850	13260690	5342	73587											
KIAA1409	57578	broad.mit.edu	37	chr14	94120360	94120360	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctccatcgcagctctcagtCagctcctagaggtgggtttc	11	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120360	A	A	94120360	3	1	61	1	0	0	0	0	1	0	0	0	8300	827	29	3	5995	3	KIAA1409	14	94120360	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31510	94120360	13229180	5343	73588											
KIAA1409	57578	broad.mit.edu	37	chr14	94120394	94120394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttcctttaatgacaccCtaagccccagccgaaactct	7	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120394	A	A	94120394	1	1	61	0	1	0	0	0	0	0	0	0	8300	696	24	2		2	KIAA1409	14	94120394	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34	94120394	13229146	5344	73589											
IFI27L1	122509	broad.mit.edu	37	chr14	94567914	94567914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggggaacagaggcccagGgagggccagtgagccctcaa	16	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94567914	T	T	94567914	1	4	61	0	1	0	0	0	0	0	0	0	7583	1247	43	2		2	IFI27L1	14	94567914	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	447520	94567914	12781626	5345	73590											
PPP4R4	57718	broad.mit.edu	37	chr14	94710940	94710940	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtatctgtctagtactctCaaatctgagagactttattg	7	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94710940	A	A	94710940	1	1	61	0	1	0	0	0	0	0	0	0	12506	841	29	3		3	PPP4R4	14	94710940	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	143026	94710940	12638600	5346	73591											
SERPINA11	256394	broad.mit.edu	37	chr14	94913161	94913161	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgattttgttccatttcagAggaacttagcttctaacaag	7	8	2	1	rs116169304	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94913161	T	T	94913161	1	4	61	0	1	0	0	0	0	0	0	0	14201	319	11	5		5	SERPINA11	14	94913161	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	202221	94913161	12436379	5347	73592											
SERPINA9	327657	broad.mit.edu	37	chr14	94938246	94938246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttcccttggtccaaaCcctccttatctctcccctgg	5	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94938246	A	A	94938246	1	1	61	0	1	0	0	0	0	0	0	0	14208	522	18	3		3	SERPINA9	14	94938246	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	25085	94938246	12411294	5348	73593											
SERPINA9	327657	broad.mit.edu	37	chr14	94940039	94940039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttccctgtgacaagctGgggtctactgtgttaacttg	12	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94940039	T	T	94940039	1	4	61	0	1	0	0	0	0	0	0	0	14208	1363	47	2		2	SERPINA9	14	94940039	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1793	94940039	12409501	5349	73594											
SERPINA12	145264	broad.mit.edu	37	chr14	94956299	94956299	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cataagctctctgaaccgtgTccctgcctcccagcacacct	6	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94956299	G	G	94956299	1	3	61	0	1	0	0	0	0	0	0	0	14202	1682	58	5		5	SERPINA12	14	94956299	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16260	94956299	12393241	5350	73595											
SERPINA3	12	broad.mit.edu	37	chr14	95089889	95089889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttagtggcacacaggcaGgtcgctgaactcctgcgcat	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95089889	T	T	95089889	1	4	61	0	1	0	0	0	0	0	0	0	14203	1015	35	2		2	SERPINA3	14	95089889	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	133590	95089889	12259651	5351	73596											
C14orf49	161176	broad.mit.edu	37	chr14	95909453	95909453	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttggatgacaggggccggCtctctgtcaaagcacaggcc	14	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95909453	T	T	95909453	1	4	61	0	1	0	0	0	0	0	0	0	1789	812	28	4		4	C14orf49	14	95909453	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	819564	95909453	11440087	5352	73597											
TCL1A	8115	broad.mit.edu	37	chr14	96180146	96180146	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctattcatcctccagagcccGgctcaaagtggcttcatctg	8	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96180146	C	C	96180146	1	2	61	0	1	0	0	0	0	0	0	0	15826	1131	39	4		4	TCL1A	14	96180146	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	270693	96180146	11169394	5353	73598											
TCL1A	8115	broad.mit.edu	37	chr14	96180276	96180276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgccatccgctccaaagctGgctgtacctcgatggttaag	10	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96180276	T	T	96180276	1	4	61	0	1	0	0	0	0	0	0	0	15826	1363	47	2		2	TCL1A	14	96180276	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	130	96180276	11169264	5354	73599											
ATG2B	55102	broad.mit.edu	37	chr14	96758240	96758240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacattaaaaacaattaaatTtaaaaaccttgcacttcatt	1	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96758240	A	A	96758240	1	1	61	0	1	0	0	0	0	0	0	0	1098	1856	64	5		5	ATG2B	14	96758240	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	577964	96758240	10591300	5355	73600											
PAPOLA	10914	broad.mit.edu	37	chr14	96998700	96998700	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgatgaaattttacatctaGtaccaaacattgacaacttc	4	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96998700	C	C	96998700	3	2	61	1	0	0	0	0	1	0	0	0	11523	1029	36	4	670	4	PAPOLA	14	96998700	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	240460	96998700	10350840	5356	73601											
C14orf177	283598	broad.mit.edu	37	chr14	99175155	99175158	+	5'Flank	DEL	CTTC	-	-													tttcccttcttcctttctttCttccttccttccttcctttt					rs34060029		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99175158	-	-	99175155	6	5	61	0	1	1	0	1	0	0	0	0	1773	928	32	0		0	C14orf177	14	99175155	5'Flank	DEL	CTTC	TCGA-17-Z031-01A-01W-0746-08	2176455	99175155	8174385	5357	73602											
BCL11B	64919	broad.mit.edu	37	chr14	99708627	99708627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgcatgatcttgtccccCtgcttccctaccttttctcg	6	16	2	1	rs76492138		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99708627	A	A	99708627	1	1	61	0	1	0	0	0	0	0	0	0	1369	696	24	2		2	BCL11B	14	99708627	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	533472	99708627	7640913	5358	73603											
SETD3	84193	broad.mit.edu	37	chr14	99870535	99870535	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaaagaaaaaagtcaaCatctcttttttcctgaaatg	4	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99870535	G	G	99870535	1	3	61	0	1	0	0	0	0	0	0	0	14245	493	17	4		4	SETD3	14	99870535	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	161908	99870535	7479005	5359	73604											
HHIPL1	84439	broad.mit.edu	37	chr14	100123115	100123118	+	Intron	DEL	AAAG	-	-													gagcaacactctgtctgcaaAaagaaaagaaaagaaagaaa					rs35577018		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100123118	-	-	100123115	6	5	61	0	1	1	0	1	0	0	0	0	7160	29	1	0		0	HHIPL1	14	100123115	Intron	DEL	AAAG	TCGA-17-Z031-01A-01W-0746-08	252580	100123115	7226425	5360	73605											
CYP46A1	10858	broad.mit.edu	37	chr14	100166295	100166295	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgaccccaagcccatcaAgcagtcgctccccacccccc	5	21	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100166295	C	C	100166295	1	2	61	0	1	0	0	0	0	0	0	0	4215	87	3	5		5	CYP46A1	14	100166295	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	43180	100166295	7183245	5361	73606											
EML1	2009	broad.mit.edu	37	chr14	100406459	100406459	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcatttagtacccaccgAgagctgtggggagcagcatg	14	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100406459	T	T	100406459	1	4	61	0	1	0	0	0	0	0	0	0	5138	319	11	5		5	EML1	14	100406459	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	240164	100406459	6943081	5362	73607											
DIO3	1735	broad.mit.edu	37	chr14	102028809	102028809	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgagccttcgaagcccacGtgcaagcgcctcaaaccaag	9	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102028809	T	T	102028809	1	4	61	0	1	0	0	0	0	0	0	0	4566	1160	40	3		3	DIO3	14	102028809	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1622350	102028809	5320731	5363	73608											
C14orf73	91828	broad.mit.edu	37	chr14	103574772	103574772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaccaagccatccagtgcGtggctgagatcctgggcgag	15	11	0	1	rs142666277	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103574772	T	T	103574772	3	4	61	1	0	0	0	0	1	0	0	0	1792	1145	40	3	1932	3	C14orf73	14	103574772	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1545963	103574772	3774768	5364	73609											
MARK3	4140	broad.mit.edu	37	chr14	103878747	103878747	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctatgccgaggattcgtgGgatttgctttatcagagact	12	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103878747	T	T	103878747	1	4	61	0	1	0	0	0	0	0	0	0	9406	1247	43	2		2	MARK3	14	103878747	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	303975	103878747	3470793	5365	73610											
MARK3	4140	broad.mit.edu	37	chr14	103923657	103923657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttataaggcctgttggatgGcaggggttggccattcaatt	13	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103923657	T	T	103923657	1	4	61	0	1	0	0	0	0	0	0	0	9406	1218	42	3		3	MARK3	14	103923657	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44910	103923657	3425883	5366	73611											
AHNAK2	113146	broad.mit.edu	37	chr14	105412494	105412494	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacctccacgtcgggggcCgtcacgtccgtcttcgggcc	13	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105412494	A	A	105412494	2	1	61	1	0	0	0	0	0	0	0	1	415	639	23	1		1	AHNAK2	14	105412494	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1488837	105412494	1937046	5367	73612											
AHNAK2	113146	broad.mit.edu	37	chr14	105414042	105414042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacatctagctgggggccCttgaggtccatttcaggcat	12	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105414042	A	A	105414042	3	1	61	1	0	0	0	0	1	0	0	0	415	680	24	2	9645	2	AHNAK2	14	105414042	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1548	105414042	1935498	5368	73613											
OR4N4	283694	broad.mit.edu	37	chr15	22310762	22310762	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatcatcattacagtcttaGaatattctggatatgacttt	5	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22310762	C	C	22310762	1	2	61	0	1	0	0	0	0	0	0	0	11172	957	33	4		4	OR4N4	15	22310762	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08		22310762	80220630	5369	73614											
OR4N4	283694	broad.mit.edu	37	chr15	22319260	22319260	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcttcaatgggacgggatCacaaataaaatggttgataa	9	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22319260	G	G	22319260	1	3	61	0	1	0	0	0	0	0	0	0	11172	841	29	4		4	OR4N4	15	22319260	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8498	22319260	80212132	5370	73615											
OR4N4	283694	broad.mit.edu	37	chr15	22328605	22328605	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccacatagcttctgacAagcaaagatgtaggtttctc	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22328605	C	C	22328605	1	2	61	0	1	0	0	0	0	0	0	0	11172	145	5	5		5	OR4N4	15	22328605	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9345	22328605	80202787	5371	73616											
OR4N4	283694	broad.mit.edu	37	chr15	22335695	22335695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttgaatatcctgaagtaCaggaaactgcccgagagtag	10	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22335695	A	A	22335695	1	1	61	0	1	0	0	0	0	0	0	0	11172	493	17	3		3	OR4N4	15	22335695	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7090	22335695	80195697	5372	73617											
OR4N4	283694	broad.mit.edu	37	chr15	22340354	22340354	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactattgcacgaaaagtttTccatgagatagaacttgctg	8	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22340354	G	G	22340354	1	3	61	0	1	0	0	0	0	0	0	0	11172	1798	62	5		5	OR4N4	15	22340354	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4659	22340354	80191038	5373	73618											
OR4N4	283694	broad.mit.edu	37	chr15	22350516	22350516	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgtattagtccgttcTcacactgctaataaagacat	7	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22350516	C	C	22350516	1	2	61	0	1	0	0	0	0	0	0	0	11172	1566	54	5		5	OR4N4	15	22350516	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10162	22350516	80180876	5374	73619											
OR4N4	283694	broad.mit.edu	37	chr15	22351031	22351031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttccatatacctgttggCcatttgtgtatcttctttgg	7	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22351031	A	A	22351031	1	1	61	0	1	0	0	0	0	0	0	0	11172	754	26	3		3	OR4N4	15	22351031	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	515	22351031	80180361	5375	73620											
OR4N4	283694	broad.mit.edu	37	chr15	22363110	22363110	+	Intron	SNP	G	C	C													ttgcactaatgaggcacactGaggcagaggtaagtgagttg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22363110	C	C	22363110	1	2	61	0	1	0	0	0	0	0	0	0	11172	1305	45	4		4	OR4N4	15	22363110	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12079	22363110	80168282	5376	73621	333	2									
OR4N4	283694	broad.mit.edu	37	chr15	22363112	22363112	+	Intron	SNP	G	A	A													gcactaatgaggcacactgaGgcagaggtaagtgagttgcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363112	A	A	22363112	1	1	61	0	1	0	0	0	0	0	0	0	11172	1015	35	4		4	OR4N4	15	22363112	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2	22363112	80168280	5377	73622	333	2									
OR4N4	283694	broad.mit.edu	37	chr15	22364389	22364389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaagtgttgtatatatcCacaatggtgatgatatcact	7	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22364389	A	A	22364389	1	1	61	0	1	0	0	0	0	0	0	0	11172	609	21	2		2	OR4N4	15	22364389	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1277	22364389	80167003	5378	73623											
OR4N4	283694	broad.mit.edu	37	chr15	22376532	22376532	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggctctacctctctatcttCccttacaattttttccattt	2	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22376532	T	T	22376532	1	4	61	0	1	0	0	0	0	0	0	0	11172	870	30	4		4	OR4N4	15	22376532	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12143	22376532	80154860	5379	73624											
OR4N4	283694	broad.mit.edu	37	chr15	22383138	22383138	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttcctatgcagtcatcctCtgccatgttcgtagggcagc	10	13	2	0	rs145480212	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22383138	A	A	22383138	2	1	61	1	0	0	0	0	0	0	0	1	11172	900	32	3		3	OR4N4	15	22383138	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6606	22383138	80148254	5380	73625											
CYFIP1	23191	broad.mit.edu	37	chr15	22963965	22963965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagatgcactcatcgggcGtggcctataccaagcctctt	10	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22963965	T	T	22963965	1	4	61	0	1	0	0	0	0	0	0	0	4170	1160	40	3		3	CYFIP1	15	22963965	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	580827	22963965	79567427	5381	73626											
MKRN3	7681	broad.mit.edu	37	chr15	23812484	23812484	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcatgtggtctagtctgcTgaggttctgtcgtctgctat	13	8	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23812484	A	A	23812484	1	1	61	0	1	0	0	0	0	0	0	0	9701	1595	55	5		5	MKRN3	15	23812484	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	848519	23812484	78718908	5382	73627											
C15orf2	23742	broad.mit.edu	37	chr15	24921603	24921603	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtcccagggcacccagggaGacgtggcctccttcagatgc	14	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24921603	T	T	24921603	3	4	61	1	0	0	0	0	1	0	0	0	1797	942	33	3	591	3	C15orf2	15	24921603	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1109119	24921603	77609789	5383	73628											
SNRPN	6638	broad.mit.edu	37	chr15	25154871	25154871	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgtatcaccaagcgtttCcgagtatcgtaatcagtttt	7	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25154871	A	A	25154871	1	1	61	0	1	0	0	0	0	0	0	0	14984	870	30	3		3	SNRPN	15	25154871	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	233268	25154871	77376521	5384	73629											
SNRPN	6638	broad.mit.edu	37	chr15	25223785	25223785	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgagatcttaagttacTgtggatgagggtgatgccta	13	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25223785	C	C	25223785	1	2	61	0	1	0	0	0	0	0	0	0	14984	1595	55	5		5	SNRPN	15	25223785	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	68914	25223785	77307607	5385	73630											
UBE3A	7337	broad.mit.edu	37	chr15	25601070	25601071	+	Missense_Mutation	DNP	TC	AT	AT													catttgtaattggaattttaTcaccattttcctttagatca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	25601071	AT	AT	25601070	3	1	61	1	0	0	0	0	1	0	0	0	17005	1435	50	5	545	5	UBE3A	15	25601070	Missense_Mutation	DNP	TC	TCGA-17-Z031-01A-01W-0746-08	377285	25601070	76930322	5386	73631											
ATP10A	57194	broad.mit.edu	37	chr15	25932590	25932590	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttctcactctgcagccatCagtggacttgctagtgttat	8	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25932590	T	T	25932590	1	4	61	0	1	0	0	0	0	0	0	0	1120	841	29	4		4	ATP10A	15	25932590	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	331520	25932590	76598802	5387	73632											
GABRB3	2562	broad.mit.edu	37	chr15	26793083	26793083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagacctcctccgtagatGggtcttcttgtgcgggaggc	14	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26793083	T	T	26793083	3	4	61	1	0	0	0	0	1	0	0	0	6228	1348	47	2	146	2	GABRB3	15	26793083	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	860493	26793083	75738309	5388	73633											
GABRB3	2562	broad.mit.edu	37	chr15	26866646	26866647	+	Missense_Mutation	DNP	CC	GA	GA													taggcgagccttttatctctCcaatattgttgaaaatacat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	26866647	GA	GA	26866646	3	3	61	1	0	0	0	0	1	0	0	0	6228	856	30	4	1169	4	GABRB3	15	26866646	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	73563	26866646	75664746	5389	73634											
GABRB3	2562	broad.mit.edu	37	chr15	27182192	27182192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccctggtccaaccaccCtatgcattttttaggtcatg	7	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182192	A	A	27182192	1	1	61	0	1	0	0	0	0	0	0	0	6228	696	24	2		2	GABRB3	15	27182192	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	315546	27182192	75349200	5390	73635											
GABRG3	2567	broad.mit.edu	37	chr15	27254228	27254228	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcagactctgctcacgGtgccgtctggaagacactgc	12	13	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27254228	T	T	27254228	1	4	61	0	1	0	0	0	0	0	0	0	6233	1276	44	3		3	GABRG3	15	27254228	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	72036	27254228	75277164	5391	73636											
GABRG3	2567	broad.mit.edu	37	chr15	27357101	27357102	+	Intron	DEL	AC	-	-													ggttctatgaatgttttacaAcagttacactccccattcct					rs142228451		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27357102	-	-	27357101	6	5	61	0	1	1	0	1	0	0	0	0	6233	58	2	0		0	GABRG3	15	27357101	Intron	DEL	AC	TCGA-17-Z031-01A-01W-0746-08	102873	27357101	75174291	5392	73637											
GABRG3	2567	broad.mit.edu	37	chr15	27597265	27597265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtatgtatggtgtgtgTgtatgtatgatgtgtgtatt	15	0	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27597265	A	A	27597265	1	1	61	0	1	0	0	0	0	0	0	0	6233	1711	59	5		5	GABRG3	15	27597265	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	240164	27597265	74934127	5393	73638											
GABRG3	2567	broad.mit.edu	37	chr15	27598293	27598293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctcttgcccctacctgGgcacctacacactgttctca	5	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27598293	T	T	27598293	1	4	61	0	1	0	0	0	0	0	0	0	6233	1247	43	2		2	GABRG3	15	27598293	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1028	27598293	74933099	5394	73639											
OCA2	4948	broad.mit.edu	37	chr15	28074595	28074595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactttctagacttccttgCacctaaagcagaatacatgg	6	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28074595	A	A	28074595	1	1	61	0	1	0	0	0	0	0	0	0	10910	725	25	3		3	OCA2	15	28074595	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	476302	28074595	74456797	5395	73640											
OCA2	4948	broad.mit.edu	37	chr15	28211920	28211920	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcagaccaggagaacaaGgcaaatcccaatgaacatgt	9	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28211920	A	A	28211920	3	1	61	1	0	0	0	0	1	0	0	0	10910	1000	35	4	1004	4	OCA2	15	28211920	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	137325	28211920	74319472	5396	73641											
HERC2	8924	broad.mit.edu	37	chr15	28457364	28457364	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacggagaagagggtgtgagCcatggggttcttcaagtgtg	17	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28457364	T	T	28457364	1	4	61	0	1	0	0	0	0	0	0	0	7125	754	26	4		4	HERC2	15	28457364	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	245444	28457364	74074028	5397	73642											
HERC2	8924	broad.mit.edu	37	chr15	28520107	28520107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacagcgccgctcgggatCccactctggcgagcccctcc	11	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28520107	A	A	28520107	3	1	61	1	0	0	0	0	1	0	0	0	7125	855	30	3	14269	3	HERC2	15	28520107	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	62743	28520107	74011285	5398	73643											
APBA2	321	broad.mit.edu	37	chr15	29368378	29368378	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttagtttgggcattcaccTgcaaagcttgtttacaaagc	8	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29368378	A	A	29368378	1	1	61	0	1	0	0	0	0	0	0	0	759	1595	55	5		5	APBA2	15	29368378	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	848271	29368378	73163014	5399	73644											
TJP1	7082	broad.mit.edu	37	chr15	30024753	30024753	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagagaaattcacatgaAaaacagcatattttatacct	6	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30024753	G	G	30024753	1	3	61	0	1	0	0	0	0	0	0	0	16052	29	1	5		5	TJP1	15	30024753	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	656375	30024753	72506639	5400	73645											
TRPM1	4308	broad.mit.edu	37	chr15	31342759	31342759	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccgtggctttgctgtcCgtcgggggtgccaggcttcc	14	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31342759	T	T	31342759	2	4	61	1	0	0	0	0	0	0	0	1	16710	639	23	4		4	TRPM1	15	31342759	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1318006	31342759	71188633	5401	73646											
FMN1	342184	broad.mit.edu	37	chr15	33170755	33170755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaggactagctgtcagaCatgagagcacaaaaggaatc	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33170755	A	A	33170755	1	1	61	0	1	0	0	0	0	0	0	0	6007	493	17	3		3	FMN1	15	33170755	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1827996	33170755	69360637	5402	73647											
FMN1	342184	broad.mit.edu	37	chr15	33243669	33243669	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacatccacgcacaCacaaataggggaaatggatt	7	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33243669	T	T	33243669	1	4	61	0	1	0	0	0	0	0	0	0	6007	493	17	4		4	FMN1	15	33243669	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	72914	33243669	69287723	5403	73648											
RYR3	6263	broad.mit.edu	37	chr15	33785351	33785351	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcccctctcccctcaatcTtcaccccatctctctgtttc	1	21	7	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33785351	G	G	33785351	1	3	61	0	1	0	0	0	0	0	0	0	13881	1624	56	5		5	RYR3	15	33785351	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	541682	33785351	68746041	5404	73649											
RYR3	6263	broad.mit.edu	37	chr15	33814038	33814038	+	Intron	DEL	G	-	-													cattgcagcctttgacatttGgtcctgtctttttagtaagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33814038	-	-	33814038	6	5	61	0	1	1	0	1	0	0	0	0	13881	1363	47	0		0	RYR3	15	33814038	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	28687	33814038	68717354	5405	73650											
RYR3	6263	broad.mit.edu	37	chr15	33814586	33814586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggacctgtactgctctGgctgagttggtccaggccca	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33814586	T	T	33814586	1	4	61	0	1	0	0	0	0	0	0	0	13881	1363	47	2		2	RYR3	15	33814586	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	548	33814586	68716806	5406	73651											
RYR3	6263	broad.mit.edu	37	chr15	33895184	33895184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcttttagagatccctcCcatcttttgagcaatatgaa	7	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33895184	A	A	33895184	1	1	61	0	1	0	0	0	0	0	0	0	13881	638	22	2		2	RYR3	15	33895184	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	80598	33895184	68636208	5407	73652											
RYR3	6263	broad.mit.edu	37	chr15	33954739	33954739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggttcaggttctccaccCcttgctttgttgtgactggt	11	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33954739	A	A	33954739	3	1	61	1	0	0	0	0	1	0	0	0	13881	623	22	2	5146	2	RYR3	15	33954739	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	59555	33954739	68576653	5408	73653											
RYR3	6263	broad.mit.edu	37	chr15	34115369	34115369	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatactggcctaccatAgaattcttgagagaggaagc	9	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34115369	G	G	34115369	1	3	61	0	1	0	0	0	0	0	0	0	13881	435	15	5		5	RYR3	15	34115369	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	160630	34115369	68416023	5409	73654											
RYR3	6263	broad.mit.edu	37	chr15	34123242	34123242	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagcacaatttttccaaaGctctggcagtcaccaagcag	8	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34123242	A	A	34123242	3	1	61	1	0	0	0	0	1	0	0	0	13881	971	34	4	11755	4	RYR3	15	34123242	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7873	34123242	68408150	5410	73655											
SLC12A6	9990	broad.mit.edu	37	chr15	34542575	34542575	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctaccatattgagagtcaAggaaactgttgtttaccctc	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34542575	C	C	34542575	1	2	61	0	1	0	0	0	0	0	0	0	14500	87	3	5		5	SLC12A6	15	34542575	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	419333	34542575	67988817	5411	73656											
C15orf55	256646	broad.mit.edu	37	chr15	34640339	34640339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccagacaaccctctgatGctctctgctttccccagctc	5	18	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34640339	A	A	34640339	3	1	61	1	0	0	0	0	1	0	0	0	1816	1319	46	4	192	4	C15orf55	15	34640339	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	97764	34640339	67891053	5412	73657											
ACTC1	70	broad.mit.edu	37	chr15	35082644	35082644	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcggtggacaatggatgggCctgcctcatcgtactcttgc	13	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35082644	T	T	35082644	3	4	61	1	0	0	0	0	1	0	0	0	195	739	26	4	34	4	ACTC1	15	35082644	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	442305	35082644	67448748	5413	73658											
MEIS2	4212	broad.mit.edu	37	chr15	37395912	37395912	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgaattacaggcgtgagccAtcgcacccggccgatttcta	10	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37395912	T	T	37395912	1	4	61	0	1	0	0	0	0	0	0	0	9561	232	8	5		5	MEIS2	15	37395912	5'Flank	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2313268	37395912	65135480	5414	73659											
TMCO5A	145942	broad.mit.edu	37	chr15	38237529	38237529	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctattgtgaacagtgctgcAatgatatttgtgtgcatgtg	12	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38237529	G	G	38237529	1	3	61	0	1	0	0	0	0	0	0	0	16122	145	5	5		5	TMCO5A	15	38237529	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	841617	38237529	64293863	5415	73660											
SPRED1	161742	broad.mit.edu	37	chr15	38543021	38543021	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcagaacaacaatcctgcGattcctggagagggatggta	11	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38543021	T	T	38543021	1	4	61	0	1	0	0	0	0	0	0	0	15210	1073	37	3		3	SPRED1	15	38543021	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	305492	38543021	63988371	5416	73661											
FAM98B	283742	broad.mit.edu	37	chr15	38751104	38751104	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtggaagatgtaagaagcaGacaagttgtccaggatgagg	16	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38751104	A	A	38751104	1	1	61	0	1	0	0	0	0	0	0	0	5714	957	33	4		4	FAM98B	15	38751104	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	208083	38751104	63780288	5417	73662											
EIF2AK4	440275	broad.mit.edu	37	chr15	40231674	40231674	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgattggctctacagctttGaaaaaaattttttttgtttt	6	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40231674	A	A	40231674	1	1	61	0	1	0	0	0	0	0	0	0	5039	1305	45	4		4	EIF2AK4	15	40231674	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1480570	40231674	62299718	5418	73663											
BUB1B	701	broad.mit.edu	37	chr15	40512981	40512981	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaggcaatcaagtctcacAgattgctgcctcagagcaat	9	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40512981	T	T	40512981	1	4	61	0	1	0	0	0	0	0	0	0	1581	203	7	5		5	BUB1B	15	40512981	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	281307	40512981	62018411	5419	73664											
PLCB2	5330	broad.mit.edu	37	chr15	40589233	40589233	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcctctcactactgcttAtcatccccattctcactgag	4	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40589233	T	T	40589233	1	4	61	0	1	0	0	0	0	0	0	0	12123	464	16	5		5	PLCB2	15	40589233	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	76252	40589233	61942159	5420	73665											
PLCB2	5330	broad.mit.edu	37	chr15	40591413	40591414	+	Missense_Mutation	DNP	GG	TT	TT													caggttctgggaagtcctcaGgattgatggcgtcattctag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	40591414	TT	TT	40591413	3	4	61	1	0	0	0	0	1	0	0	0	12123	1000	35	2	3058	2	PLCB2	15	40591413	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	2180	40591413	61939979	5421	73666											
C15orf52	388115	broad.mit.edu	37	chr15	40630806	40630806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacgccctccaggtgacCcctctatgccttggttcctt	7	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40630806	A	A	40630806	3	1	61	1	0	0	0	0	1	0	0	0	1813	623	22	2	1057	2	C15orf52	15	40630806	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	39393	40630806	61900586	5422	73667											
DISP2	85455	broad.mit.edu	37	chr15	40657944	40657944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgagctggtgggggagGtgccaggggtttggggggaa	24	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40657944	T	T	40657944	1	4	61	0	1	0	0	0	0	0	0	0	4580	1276	44	3		3	DISP2	15	40657944	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	27138	40657944	61873448	5423	73668											
IVD	3712	broad.mit.edu	37	chr15	40699843	40699843	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctctcctattagcttcgtCagaccatggctaagttcctt	6	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40699843	A	A	40699843	3	1	61	1	0	0	0	0	1	0	0	0	7998	827	29	3	166	3	IVD	15	40699843	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41899	40699843	61831549	5424	73669											
BAHD1	22893	broad.mit.edu	37	chr15	40757559	40757559	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagaatgaagtgtttgcatCgcgacatcaggaccagaaca	11	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40757559	G	G	40757559	3	3	61	1	0	0	0	0	1	0	0	0	1302	893	31	4	2096	4	BAHD1	15	40757559	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	57716	40757559	61773833	5425	73670											
CASC5	57082	broad.mit.edu	37	chr15	40954257	40954258	+	Intron	INS	-	T	T													aaaaagaaaattgattaaccINStttgttctttccagccaaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40954258	T	T	40954257	6	5	61	0	1	1	1	0	0	0	0	0	2689	696	24	0		0	CASC5	15	40954257	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	196698	40954257	61577135	5426	73671											
RAD51	5888	broad.mit.edu	37	chr15	41023425	41023425	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttaagtgctgcagcctaatGagagtgcactgctccctggg	12	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41023425	T	T	41023425	1	4	61	0	1	0	0	0	0	0	0	0	13093	1305	45	3		3	RAD51	15	41023425	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69168	41023425	61507967	5427	73672											
ZFYVE19	84936	broad.mit.edu	37	chr15	41102329	41102329	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccctaaaggatgaacgtcAgggttccatcccttccaccc	8	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41102329	C	C	41102329	3	2	61	1	0	0	0	0	1	0	0	0	17791	188	7	5	650	5	ZFYVE19	15	41102329	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	78904	41102329	61429063	5428	73673											
NUSAP1	51203	broad.mit.edu	37	chr15	41657777	41657777	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctatctctgcagctaaaAcgggtgtcaggtaaagaaat	10	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41657777	G	G	41657777	3	3	61	1	0	0	0	0	1	0	0	0	10873	43	2	5	864	5	NUSAP1	15	41657777	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	555448	41657777	60873615	5429	73674											
SPTBN5	51332	broad.mit.edu	37	chr15	42155795	42155795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccaagtacccagctgaaCaggagaggccagtgaggggg	15	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42155795	A	A	42155795	1	1	61	0	1	0	0	0	0	0	0	0	15240	493	17	3		3	SPTBN5	15	42155795	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	498018	42155795	60375597	5430	73675											
UBR1	197131	broad.mit.edu	37	chr15	43351858	43351858	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgtggctataaaacacaTagtattttatcagaaacaag	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43351858	C	C	43351858	1	2	61	0	1	0	0	0	0	0	0	0	17027	1421	49	5		5	UBR1	15	43351858	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1196063	43351858	59179534	5431	73676											
TMEM62	80021	broad.mit.edu	37	chr15	43441153	43441154	+	Intron	DNP	GG	AT	AT													gttacctattctgcttttctGgcaagacatttttattagtt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43441154	AT	AT	43441153	1	1	61	0	1	0	0	0	0	0	0	0	16312	1363	47	4		4	TMEM62	15	43441153	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	89295	43441153	59090239	5432	73677											
TGM5	9333	broad.mit.edu	37	chr15	43533162	43533162	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcgaagttggtgatcacacGggtagggatccccagacacc	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43533162	C	C	43533162	3	2	61	1	0	0	0	0	1	0	0	0	15956	1116	39	4	1301	4	TGM5	15	43533162	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	92009	43533162	58998230	5433	73678											
TGM5	9333	broad.mit.edu	37	chr15	43558982	43558982	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccccttgacttcctacaGtctctctctgtccttcttat	3	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43558982	A	A	43558982	1	1	61	0	1	0	0	0	0	0	0	0	15956	1044	36	4		4	TGM5	15	43558982	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	25820	43558982	58972410	5434	73679											
SLC28A2	9153	broad.mit.edu	37	chr15	45545372	45545372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaatgaccaatctttcaGgcttggccctgaatttgttt	8	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45545372	T	T	45545372	1	4	61	0	1	0	0	0	0	0	0	0	14646	1015	35	2		2	SLC28A2	15	45545372	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1986390	45545372	56986020	5435	73680											
SLC28A2	9153	broad.mit.edu	37	chr15	45557693	45557693	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctacactgtatgagatacCcttggaatgctaagagctta	8	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45557693	G	G	45557693	1	3	61	0	1	0	0	0	0	0	0	0	14646	638	22	4		4	SLC28A2	15	45557693	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12321	45557693	56973699	5436	73681											
PLDN	26258	broad.mit.edu	37	chr15	45897586	45897586	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attcattttgatattttagtCtattttaacttgacttttca	3	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45897586	G	G	45897586	1	3	61	0	1	0	0	0	0	0	0	0	12146	928	32	4		4	PLDN	15	45897586	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	339893	45897586	56633806	5437	73682											
PLDN	26258	broad.mit.edu	37	chr15	45897601	45897601	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtctattttaacttgacTtttcatttatttttccatgt	3	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45897601	G	G	45897601	1	3	61	0	1	0	0	0	0	0	0	0	12146	1624	56	5		5	PLDN	15	45897601	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15	45897601	56633791	5438	73683											
SEMA6D	80031	broad.mit.edu	37	chr15	48056736	48056736	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactcactctccttcctcaCttgacctcttctctgagaat	3	16	6	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48056736	T	T	48056736	1	4	61	0	1	0	0	0	0	0	0	0	14155	580	20	4		4	SEMA6D	15	48056736	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2159135	48056736	54474656	5439	73684											
SEMA6D	80031	broad.mit.edu	37	chr15	48058162	48058162	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgttctctagctgcattatCcgcatccccctcagtcgctg	8	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48058162	T	T	48058162	2	4	61	1	0	0	0	0	0	0	0	1	14155	845	30	4		4	SEMA6D	15	48058162	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1426	48058162	54473230	5440	73685											
SLC12A1	6557	broad.mit.edu	37	chr15	48544096	48544096	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggatattaataatatcgtgCaatataatagtaacaatagt	6	3	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48544096	G	G	48544096	1	3	61	0	1	0	0	0	0	0	0	0	14495	725	25	4		4	SLC12A1	15	48544096	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	485934	48544096	53987296	5441	73686											
SECISBP2L	9728	broad.mit.edu	37	chr15	49320347	49320347	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaacaagtacctgcacAcatagatgattccacatgct	6	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49320347	C	C	49320347	3	2	61	1	0	0	0	0	1	0	0	0	14120	159	6	5	2305	5	SECISBP2L	15	49320347	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	776251	49320347	53211045	5442	73687											
GALK2	2585	broad.mit.edu	37	chr15	49574349	49574349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttacatggagaagaagGccctgagagccccaggatgc	12	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49574349	T	T	49574349	1	4	61	0	1	0	0	0	0	0	0	0	6266	1218	42	3		3	GALK2	15	49574349	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	254002	49574349	52957043	5443	73688											
C15orf33	196951	broad.mit.edu	37	chr15	49650396	49650396	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacagggatgccctcctcaCcactcctattcaacatagtg	7	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49650396	T	T	49650396	1	4	61	0	1	0	0	0	0	0	0	0	1804	522	18	4		4	C15orf33	15	49650396	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76047	49650396	52880996	5444	73689											
ATP8B4	79895	broad.mit.edu	37	chr15	50154462	50154462	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcactcagggttgggtAtaaatccaccttcaaaaatc	7	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50154462	G	G	50154462	3	3	61	1	0	0	0	0	1	0	0	0	1201	449	16	5	309	5	ATP8B4	15	50154462	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	504066	50154462	52376930	5445	73690											
ATP8B4	79895	broad.mit.edu	37	chr15	50399200	50399200	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaggtctcaacaggtgGcctacctaagaaaaagaagt	9	10	2	2	rs148895992	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50399200	T	T	50399200	1	4	61	0	1	0	0	0	0	0	0	0	1201	1218	42	3		3	ATP8B4	15	50399200	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	244738	50399200	52132192	5446	73691											
AP4E1	23431	broad.mit.edu	37	chr15	51237100	51237100	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catccaaagaacctggctacTgtcctttctggggcgtgtga	11	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51237100	A	A	51237100	1	1	61	0	1	0	0	0	0	0	0	0	754	1595	55	5		5	AP4E1	15	51237100	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	837900	51237100	51294292	5447	73692											
AP4E1	23431	broad.mit.edu	37	chr15	51240291	51240291	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaatgcttgaatatttAcatcagagcaaagaagagta	8	5	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51240291	T	T	51240291	3	4	61	1	0	0	0	0	1	0	0	0	754	388	14	5	1293	5	AP4E1	15	51240291	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3191	51240291	51291101	5448	73693											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51396950	51396950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccttgtgttcctggaaccCacatcctcttagctttgcct	7	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51396950	A	A	51396950	1	1	61	0	1	0	0	0	0	0	0	0	16402	609	21	2		2	TNFAIP8L3	15	51396950	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	156659	51396950	51134442	5449	73694											
CYP19A1	1588	broad.mit.edu	37	chr15	51539284	51539284	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacccatttggccattccTccttcttgtatctgttctcc	6	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51539284	C	C	51539284	1	2	61	0	1	0	0	0	0	0	0	0	4181	1566	54	5		5	CYP19A1	15	51539284	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	142334	51539284	50992108	5450	73695											
CYP19A1	1588	broad.mit.edu	37	chr15	51555471	51555471	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taactgtataaagggctgctGagtggtcaagtcagatgcag	13	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51555471	T	T	51555471	1	4	61	0	1	0	0	0	0	0	0	0	4181	1305	45	3		3	CYP19A1	15	51555471	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16187	51555471	50975921	5451	73696											
CYP19A1	1588	broad.mit.edu	37	chr15	51605091	51605091	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagggctttaactcaagcaGacttggggatggatgggact	15	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51605091	T	T	51605091	1	4	61	0	1	0	0	0	0	0	0	0	4181	957	33	3		3	CYP19A1	15	51605091	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49620	51605091	50926301	5452	73697											
DMXL2	23312	broad.mit.edu	37	chr15	51830521	51830521	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttatcagaaagttttcGtaattgatgcataaatactt	6	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51830521	A	A	51830521	4	1	61	1	0	0	0	0	0	1	0	0	4635	1153	40	4	8015	4	DMXL2	15	51830521	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	225430	51830521	50700871	5453	73698											
DMXL2	23312	broad.mit.edu	37	chr15	51839695	51839695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttttaaaaattaagttaCatctaaaaactaatatgtga	4	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51839695	A	A	51839695	1	1	61	0	1	0	0	0	0	0	0	0	4635	493	17	3		3	DMXL2	15	51839695	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9174	51839695	50691697	5454	73699											
TMOD3	29766	broad.mit.edu	37	chr15	52181289	52181289	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatttgataacgaatacaaAgttctgtaatataatgggaa	7	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52181289	T	T	52181289	3	4	61	1	0	0	0	0	1	0	0	0	16358	72	3	5	457	5	TMOD3	15	52181289	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	341594	52181289	50350103	5455	73700											
UNC13C	440279	broad.mit.edu	37	chr15	54342713	54342713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaccttctccaattgtaaCtaatgctgttgcttcatcat	4	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54342713	A	A	54342713	1	1	61	0	1	0	0	0	0	0	0	0	17112	580	20	3		3	UNC13C	15	54342713	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2161424	54342713	48188679	5456	73701											
UNC13C	440279	broad.mit.edu	37	chr15	54542315	54542315	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcagtgatccaggggctctCtcaaaataccattttcagag	8	10	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54542315	A	A	54542315	1	1	61	0	1	0	0	0	0	0	0	0	17112	928	32	3		3	UNC13C	15	54542315	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	199602	54542315	47989077	5457	73702											
UNC13C	440279	broad.mit.edu	37	chr15	54704570	54704570	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaggagagaggcaagaGcacaggagggaactgccaaa	17	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54704570	A	A	54704570	1	1	61	0	1	0	0	0	0	0	0	0	17112	986	34	4		4	UNC13C	15	54704570	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	162255	54704570	47826822	5458	73703											
UNC13C	440279	broad.mit.edu	37	chr15	54792901	54792901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattaatgattttaaagtgGgtaagcattttattactggg	10	2	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54792901	T	T	54792901	1	4	61	0	1	0	0	0	0	0	0	0	17112	1247	43	2		2	UNC13C	15	54792901	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	88331	54792901	47738491	5459	73704											
NEDD4	4734	broad.mit.edu	37	chr15	56207664	56207664	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctcctcccaatgaaatacTtcttcgtaaaataccatggt	5	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56207664	G	G	56207664	3	3	61	1	0	0	0	0	1	0	0	0	10405	1609	56	5	2693	5	NEDD4	15	56207664	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1414763	56207664	46323728	5460	73705											
RFX7	64864	broad.mit.edu	37	chr15	56481093	56481093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctggaatgcagtggtgCgatctcggctcactgcaacc	13	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56481093	A	A	56481093	1	1	61	0	1	0	0	0	0	0	0	0	13376	783	27	3		3	RFX7	15	56481093	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	273429	56481093	46050299	5461	73706											
TEX9	374618	broad.mit.edu	37	chr15	56680651	56680651	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctattattaatgtataatGtttatttttggcctgtagag	7	3	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56680651	A	A	56680651	1	1	61	0	1	0	0	0	0	0	0	0	15907	1392	48	4		4	TEX9	15	56680651	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	199558	56680651	45850741	5462	73707											
ZNF280D	54816	broad.mit.edu	37	chr15	56958410	56958410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttacaattttagtccCataatttctagttactatgc	3	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56958410	A	A	56958410	1	1	61	0	1	0	0	0	0	0	0	0	17943	609	21	2		2	ZNF280D	15	56958410	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	277759	56958410	45572982	5463	73708											
CGNL1	84952	broad.mit.edu	37	chr15	57767589	57767589	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggactttgctttgcaatcCtgacctgcaagaaaggacag	11	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57767589	T	T	57767589	1	4	61	0	1	0	0	0	0	0	0	0	3334	696	24	4		4	CGNL1	15	57767589	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	809179	57767589	44763803	5464	73709											
ALDH1A2	8854	broad.mit.edu	37	chr15	58302865	58302865	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctacaggaatggtcatccCatgaattttatcagcccagc	7	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58302865	G	G	58302865	3	3	61	1	0	0	0	0	1	0	0	0	491	594	21	4	1121	4	ALDH1A2	15	58302865	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	535276	58302865	44228527	5465	73710											
MYO1E	4643	broad.mit.edu	37	chr15	59430210	59430210	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggagggaatataaataagGgggcagagctgaaagaagca	16	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59430210	A	A	59430210	1	1	61	0	1	0	0	0	0	0	0	0	10166	1247	43	4		4	MYO1E	15	59430210	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1127345	59430210	43101182	5466	73711											
MYO1E	4643	broad.mit.edu	37	chr15	59494582	59494582	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcagcctgcagattttcCggaaataaagactttatgaa	8	7	1	3	rs142116200	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59494582	G	G	59494582	2	3	61	1	0	0	0	0	0	0	0	1	10166	639	23	4		4	MYO1E	15	59494582	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	64372	59494582	43036810	5467	73712											
FOXB1	27023	broad.mit.edu	37	chr15	60297527	60297527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctggcgcccagcaagcCagccgacgcggcgcagtacc	12	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60297527	A	A	60297527	3	1	61	1	0	0	0	0	1	0	0	0	6050	594	21	2	367	2	FOXB1	15	60297527	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	802945	60297527	42233865	5468	73713											
VPS13C	54832	broad.mit.edu	37	chr15	62333625	62333625	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaagccaacccaaaaatcActtttgtgtgatcatttaaa	5	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62333625	G	G	62333625	1	3	61	0	1	0	0	0	0	0	0	0	17318	174	6	5		5	VPS13C	15	62333625	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2036098	62333625	40197767	5469	73714											
VPS13C	54832	broad.mit.edu	37	chr15	62336370	62336370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtttctaagaacttacCaaattaagtgagttattagc	7	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62336370	A	A	62336370	1	1	61	0	1	0	0	0	0	0	0	0	17318	609	21	2		2	VPS13C	15	62336370	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2745	62336370	40195022	5470	73715											
TLN2	83660	broad.mit.edu	37	chr15	62949836	62949836	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcatccactgtgtcctGcacatgtcaccgtgggttgg	12	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62949836	A	A	62949836	1	1	61	0	1	0	0	0	0	0	0	0	16071	1334	46	4		4	TLN2	15	62949836	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	613466	62949836	39581556	5471	73716											
TLN2	83660	broad.mit.edu	37	chr15	62993236	62993236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgctggtgtgattttatgGcggggcttctccggtctcct	13	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62993236	T	T	62993236	1	4	61	0	1	0	0	0	0	0	0	0	16071	1218	42	3		3	TLN2	15	62993236	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43400	62993236	39538156	5472	73717											
TLN2	83660	broad.mit.edu	37	chr15	63032754	63032754	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgcatgtcaggatgcTgctcctagctctctgaatgc	10	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63032754	A	A	63032754	1	1	61	0	1	0	0	0	0	0	0	0	16071	1595	55	5		5	TLN2	15	63032754	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	39518	63032754	39498638	5473	73718											
TLN2	83660	broad.mit.edu	37	chr15	63055787	63055787	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcccctggacagagggagTgtgattactccatcgatggc	14	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63055787	C	C	63055787	3	2	61	1	0	0	0	0	1	0	0	0	16071	1696	59	5	5133	5	TLN2	15	63055787	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	23033	63055787	39475605	5474	73719											
TLN2	83660	broad.mit.edu	37	chr15	63128063	63128063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggaggtttgggccttgGgtcacttctccgttgactgt	15	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63128063	T	T	63128063	1	4	61	0	1	0	0	0	0	0	0	0	16071	1247	43	2		2	TLN2	15	63128063	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	72276	63128063	39403329	5475	73720											
HERC1	8925	broad.mit.edu	37	chr15	63970559	63970559	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcatctgcatatcacaaatTttcacctatataaaagtaaa	3	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63970559	G	G	63970559	3	3	61	1	0	0	0	0	1	0	0	0	7124	1838	64	5	8198	5	HERC1	15	63970559	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	842496	63970559	38560833	5476	73721											
HERC1	8925	broad.mit.edu	37	chr15	64067665	64067665	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcctttgaggcataaaactTgttggggcaaaggtactact	11	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64067665	A	A	64067665	3	1	61	1	0	0	0	0	1	0	0	0	7124	1812	63	5	14735	5	HERC1	15	64067665	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	97106	64067665	38463727	5477	73722											
RBPMS2	348093	broad.mit.edu	37	chr15	65042643	65042643	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgttgtgctagcccagcgcTgccacctcatcagcccccgc	9	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65042643	A	A	65042643	1	1	61	0	1	0	0	0	0	0	0	0	13272	1595	55	5		5	RBPMS2	15	65042643	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	974978	65042643	37488749	5478	73723											
ANKDD1A	348094	broad.mit.edu	37	chr15	65212125	65212125	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccaaattcccgcctgtttCtaaagcaaagcagtgcaact	6	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65212125	T	T	65212125	1	4	61	0	1	0	0	0	0	0	0	0	624	928	32	4		4	ANKDD1A	15	65212125	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	169482	65212125	37319267	5479	73724											
IGDCC3	9543	broad.mit.edu	37	chr15	65623870	65623870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgcacattgcggggagGcccggggagcccctcagccc	15	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65623870	T	T	65623870	3	4	61	1	0	0	0	0	1	0	0	0	7638	1203	42	3	1196	3	IGDCC3	15	65623870	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	411745	65623870	36907522	5480	73725											
C15orf44	81556	broad.mit.edu	37	chr15	65899626	65899626	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatcgttaaaccatgggcTgctaggtgcttacgctggta	12	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65899626	A	A	65899626	2	1	61	1	0	0	0	0	0	0	0	1	1811	1567	55	5		5	C15orf44	15	65899626	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	275756	65899626	36631766	5481	73726											
DENND4A	10260	broad.mit.edu	37	chr15	65998502	65998502	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttacaaaaacagtgtgttCacttttgaaagattcatcca	6	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65998502	T	T	65998502	3	4	61	1	0	0	0	0	1	0	0	0	4473	835	29	4	3782	4	DENND4A	15	65998502	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	98876	65998502	36532890	5482	73727											
DENND4A	10260	broad.mit.edu	37	chr15	66044686	66044686	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgctcttttcatcagtggTtaatgttaccagtgcaagta	8	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66044686	G	G	66044686	1	3	61	0	1	0	0	0	0	0	0	0	4473	1740	60	5		5	DENND4A	15	66044686	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	46184	66044686	36486706	5483	73728											
RAB11A	8766	broad.mit.edu	37	chr15	66180198	66180198	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcatttctcttctcccctAgaaggctgtgtatagtccat	8	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66180198	G	G	66180198	1	3	61	0	1	0	0	0	0	0	0	0	12999	435	15	5		5	RAB11A	15	66180198	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	135512	66180198	36351194	5484	73729											
MEGF11	84465	broad.mit.edu	37	chr15	66293698	66293698	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggcacttagaaactgaGgaaaaatagacacttcccca	8	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66293698	A	A	66293698	1	1	61	0	1	0	0	0	0	0	0	0	9554	1015	35	4		4	MEGF11	15	66293698	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	113500	66293698	36237694	5485	73730											
RPL4	6124	broad.mit.edu	37	chr15	66794968	66794968	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctttagacatgaccagtgCtggtagggctgaggcagcca	13	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66794968	G	G	66794968	3	3	61	1	0	0	0	0	1	0	0	0	13706	797	28	4	908	4	RPL4	15	66794968	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	501270	66794968	35736424	5486	73731											
LCTL	197021	broad.mit.edu	37	chr15	66857252	66857252	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggactctgggctgtgcctCccaggcctcagggactgccc	13	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66857252	A	A	66857252	1	1	61	0	1	0	0	0	0	0	0	0	8766	870	30	3		3	LCTL	15	66857252	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	62284	66857252	35674140	5487	73732											
ITGA11	22801	broad.mit.edu	37	chr15	68606130	68606130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccacctggtgaagaggaCgtcagcctcgtatttgaggt	14	10	1	3	rs141749560	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68606130	A	A	68606130	3	1	61	1	0	0	0	0	1	0	0	0	7944	536	19	3	729	3	ITGA11	15	68606130	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1748878	68606130	33925262	5488	73733											
ITGA11	22801	broad.mit.edu	37	chr15	68620721	68620721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccactggagggggtgagGtggaggatggagggggcgag	24	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68620721	T	T	68620721	1	4	61	0	1	0	0	0	0	0	0	0	7944	1276	44	3		3	ITGA11	15	68620721	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14591	68620721	33910671	5489	73734											
ITGA11	22801	broad.mit.edu	37	chr15	68657189	68657189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctgcccgccctctgcCcagagcctgctgctggtctg	10	20	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68657189	A	A	68657189	1	1	61	0	1	0	0	0	0	0	0	0	7944	638	22	2		2	ITGA11	15	68657189	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36468	68657189	33874203	5490	73735											
ITGA11	22801	broad.mit.edu	37	chr15	68695101	68695101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatagtcaggagcagagccTgtgcagtctctgacctgctg	12	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68695101	A	A	68695101	1	1	61	0	1	0	0	0	0	0	0	0	7944	1595	55	5		5	ITGA11	15	68695101	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	37912	68695101	33836291	5491	73736											
CORO2B	10391	broad.mit.edu	37	chr15	68976816	68976816	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccacaggagaggagcttGtatggcacgtacatatgtgt	14	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68976816	T	T	68976816	1	4	61	0	1	0	0	0	0	0	0	0	3789	1392	48	3		3	CORO2B	15	68976816	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	281715	68976816	33554576	5492	73737											
NOX5	79400	broad.mit.edu	37	chr15	69347677	69347677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccctgcccaacaggccGcttcctggagctgcatatgt	10	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69347677	T	T	69347677	3	4	61	1	0	0	0	0	1	0	0	0	10654	1087	38	3	2094	3	NOX5	15	69347677	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	370861	69347677	33183715	5493	73738											
KIF23	9493	broad.mit.edu	37	chr15	69737187	69737187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccgacacagacgatcacGctctgcaggagacagatggg	12	12	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69737187	T	T	69737187	3	4	61	1	0	0	0	0	1	0	0	0	8361	1087	38	3	2512	3	KIF23	15	69737187	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	389510	69737187	32794205	5494	73739											
UACA	55075	broad.mit.edu	37	chr15	70968984	70968984	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtgcttggaattggatTaaaaatgtgttttagaaaac	9	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70968984	A	A	70968984	1	1	61	0	1	0	0	0	0	0	0	0	16950	1769	61	5		5	UACA	15	70968984	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1231797	70968984	31562408	5495	73740											
LARP6	55323	broad.mit.edu	37	chr15	71128756	71128757	+	Missense_Mutation	DNP	CC	TT	TT													gtagaattcgatctgatccaCcagtttcttgatcaactcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	71128757	TT	TT	71128756	3	4	61	1	0	0	0	0	1	0	0	0	8704	507	18	4	1194	4	LARP6	15	71128756	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	159772	71128756	31402636	5496	73741											
THSD4	79875	broad.mit.edu	37	chr15	71457473	71457473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccgaaggaggcctcttgGgtgcattgggatccttgaac	15	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71457473	T	T	71457473	1	4	61	0	1	0	0	0	0	0	0	0	16001	1247	43	2		2	THSD4	15	71457473	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	328717	71457473	31073919	5497	73742											
MYO9A	4649	broad.mit.edu	37	chr15	72146615	72146615	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaagaatgcattcttcTggctgctaagtaaaggattg	10	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72146615	G	G	72146615	1	3	61	0	1	0	0	0	0	0	0	0	10178	1595	55	5		5	MYO9A	15	72146615	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	689142	72146615	30384777	5498	73743											
C15orf60	283677	broad.mit.edu	37	chr15	73766187	73766187	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaggtttttgattccaaTgaagaatctggatatcttgt	8	5	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73766187	A	A	73766187	3	1	61	1	0	0	0	0	1	0	0	0	1821	1461	51	5	180	5	C15orf60	15	73766187	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1619572	73766187	28765205	5499	73744											
C15orf59	388135	broad.mit.edu	37	chr15	74032670	74032670	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcactggaggagtctGgggtctccactcgtggccca	12	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74032670	A	A	74032670	3	1	61	1	0	0	0	0	1	0	0	0	1820	1348	47	4	415	4	C15orf59	15	74032670	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	266483	74032670	28498722	5500	73745											
C15orf59	388135	broad.mit.edu	37	chr15	74043310	74043310	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtccctcctcacccctcActtacctccctcagctcctt	3	22	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74043310	C	C	74043310	1	2	61	0	1	0	0	0	0	0	0	0	1820	174	6	5		5	C15orf59	15	74043310	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	10640	74043310	28488082	5501	73746											
TBC1D21	161514	broad.mit.edu	37	chr15	74181384	74181384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacagaccaatgtctgtGcacctcccacctgcctcctc	8	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74181384	T	T	74181384	1	4	61	0	1	0	0	0	0	0	0	0	15729	1334	46	3		3	TBC1D21	15	74181384	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	138074	74181384	28350008	5502	73747											
PML	5371	broad.mit.edu	37	chr15	74290568	74290568	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgcagcggcgcctgtcggTgtaccggcagattgtggatg	16	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74290568	A	A	74290568	3	1	61	1	0	0	0	0	1	0	0	0	12230	1696	59	5	359	5	PML	15	74290568	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	109184	74290568	28240824	5503	73748											
ISLR2	57611	broad.mit.edu	37	chr15	74425025	74425025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggaggcacagcttgataGgggaggtaagctggggttca	18	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74425025	T	T	74425025	1	4	61	0	1	0	0	0	0	0	0	0	7929	1015	35	2		2	ISLR2	15	74425025	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	134457	74425025	28106367	5504	73749											
ISLR	3671	broad.mit.edu	37	chr15	74467667	74467667	+	Frame_Shift_Del	DEL	C	-	-													tcgctgcaactcaaccacaaCcgcttgcacacattggccga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74467667	-	-	74467667	7	5	61	1	0	1	0	1	0	0	0	0	7928	506	18	0	470	0	ISLR	15	74467667	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	42642	74467667	28063725	5505	73750											
STRA6	64220	broad.mit.edu	37	chr15	74485975	74485975	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggcccagtccagctttTgcctagggagggaggactaa	14	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74485975	C	C	74485975	1	2	61	0	1	0	0	0	0	0	0	0	15440	1827	63	5		5	STRA6	15	74485975	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18308	74485975	28045417	5506	73751											
SEMA7A	8482	broad.mit.edu	37	chr15	74704250	74704250	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagcatccagcgacatggtCtggatggcagccgcgcggcg	15	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74704250	A	A	74704250	3	1	61	1	0	0	0	0	1	0	0	0	14156	912	32	3	618	3	SEMA7A	15	74704250	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	218275	74704250	27827142	5507	73752											
CYP1A1	1543	broad.mit.edu	37	chr15	75013378	75013378	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtaaaagcctttcaaacTtgtgtctcttgttgtgctag	9	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75013378	G	G	75013378	3	3	61	1	0	0	0	0	1	0	0	0	4182	1609	56	5	363	5	CYP1A1	15	75013378	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	309128	75013378	27518014	5508	73753											
LMAN1L	79748	broad.mit.edu	37	chr15	75112520	75112521	+	Intron	DNP	CC	AA	AA													tcatggtgccctcagacctgCcattccagcccttacctcca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	75112521	AA	AA	75112520	1	1	61	0	1	0	0	0	0	0	0	0	8911	754	26	3		3	LMAN1L	15	75112520	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	99142	75112520	27418872	5509	73754											
LMAN1L	79748	broad.mit.edu	37	chr15	75116745	75116745	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccccaagggcctcctcGtgcctgcagcctggcatctt	10	18	1	0	rs145391326		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75116745	T	T	75116745	2	4	61	1	0	0	0	0	0	0	0	1	8911	1132	40	3		3	LMAN1L	15	75116745	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4225	75116745	27414647	5510	73755											
GOLGA6C	653641	broad.mit.edu	37	chr15	75562399	75562399	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgctcagacccccgcctCcctctctccgaagattttta	6	17	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75562399	A	A	75562399	1	1	61	0	1	0	0	0	0	0	0	0	6623	870	30	3		3	GOLGA6C	15	75562399	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	445654	75562399	26968993	5511	73756											
MAN2C1	4123	broad.mit.edu	37	chr15	75651571	75651571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaccccaaccccagccCcgcctcaccacttgctccag	4	24	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75651571	A	A	75651571	1	1	61	0	1	0	0	0	0	0	0	0	9310	638	22	2		2	MAN2C1	15	75651571	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	89172	75651571	26879821	5512	73757											
SIN3A	25942	broad.mit.edu	37	chr15	75684893	75684893	+	Frame_Shift_Del	DEL	G	-	-													tgcttcttaactgcccctgtGgcttcatctacatccatctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75684893	-	-	75684893	7	5	61	1	0	1	0	1	0	0	0	0	14438	1335	47	0	1308	0	SIN3A	15	75684893	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	33322	75684893	26846499	5513	73758											
CSPG4	1464	broad.mit.edu	37	chr15	75983079	75983079	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtcagcaccacagtgtgGgggatggagtcactcagcag	14	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75983079	A	A	75983079	2	1	61	1	0	0	0	0	0	0	0	1	3994	1219	43	4		4	CSPG4	15	75983079	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	298186	75983079	26548313	5514	73759											
ODF3L1	161753	broad.mit.edu	37	chr15	76019289	76019289	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgtccctgccctgctgctGaggtggtcagcctgaggtca	14	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76019289	T	T	76019289	1	4	61	0	1	0	0	0	0	0	0	0	10926	1305	45	3		3	ODF3L1	15	76019289	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36210	76019289	26512103	5515	73760											
NRG4	145957	broad.mit.edu	37	chr15	76254329	76254329	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgcacctacagaataaaaTtttagataaagaattgcatt	5	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76254329	G	G	76254329	1	3	61	0	1	0	0	0	0	0	0	0	10745	1508	52	5		5	NRG4	15	76254329	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	235040	76254329	26277063	5516	73761											
IDH3A	3419	broad.mit.edu	37	chr15	78461200	78461200	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatctcactgagggctttaAaatctccttggtttagttta	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78461200	T	T	78461200	1	4	61	0	1	0	0	0	0	0	0	0	7566	29	1	5		5	IDH3A	15	78461200	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2206871	78461200	24070192	5517	73762											
WDR61	80349	broad.mit.edu	37	chr15	78587210	78587210	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaaaactgcatgtctggtCagcatgacaaaagtcttaaa	8	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78587210	A	A	78587210	1	1	61	0	1	0	0	0	0	0	0	0	17439	841	29	3		3	WDR61	15	78587210	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	126010	78587210	23944182	5518	73763											
AGPHD1	123688	broad.mit.edu	37	chr15	78825798	78825798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgacagctgtagagaaggGtgctttgtttttacttgtat	11	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78825798	T	T	78825798	3	4	61	1	0	0	0	0	1	0	0	0	393	1261	44	3	922	3	AGPHD1	15	78825798	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	238588	78825798	23705594	5519	73764											
CHRNB4	1143	broad.mit.edu	37	chr15	78917398	78917398	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatttacttagggcctcatCagccacaacccagaaagaag	7	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78917398	A	A	78917398	1	1	61	0	1	0	0	0	0	0	0	0	3424	841	29	3		3	CHRNB4	15	78917398	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	91600	78917398	23613994	5520	73765											
TMED3	23423	broad.mit.edu	37	chr15	79614151	79614151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaacctctctgagcttcaAttaggcttgttgtgaggatt	9	8	2	2	rs112628527		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79614151	G	G	79614151	1	3	61	0	1	0	0	0	0	0	0	0	16128	116	4	5		5	TMED3	15	79614151	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	696753	79614151	22917241	5521	73766											
C15orf26	161502	broad.mit.edu	37	chr15	81440257	81440257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggggactggcagcccaccGgcatcttttcttaaggtatt	11	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81440257	T	T	81440257	3	4	61	1	0	0	0	0	1	0	0	0	1800	1116	39	1	717	1	C15orf26	15	81440257	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1826106	81440257	21091135	5522	73767											
IL16	3603	broad.mit.edu	37	chr15	81592114	81592114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgatcctgccttgtccaCccagccagcacctgcttcca	6	20	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81592114	A	A	81592114	3	1	61	1	0	0	0	0	1	0	0	0	7703	507	18	3	2497	3	IL16	15	81592114	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	151857	81592114	20939278	5523	73768											
BNC1	646	broad.mit.edu	37	chr15	83931885	83931885	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgctaatgcatgctgaccCacgtgctccagttctttaga	8	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83931885	G	G	83931885	2	3	61	1	0	0	0	0	0	0	0	1	1480	581	21	4		4	BNC1	15	83931885	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2339771	83931885	18599507	5524	73769											
SH3GL3	6457	broad.mit.edu	37	chr15	84257444	84257444	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatccagtgtccccagacgAgaatacaagccaaggcctgt	10	13	0	2	rs140124071		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84257444	T	T	84257444	2	4	61	1	0	0	0	0	0	0	0	1	14365	291	11	5		5	SH3GL3	15	84257444	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	325559	84257444	18273948	5525	73770											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84359097	84359097	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatgcctacctctccaacTtctcttctcccaacttcccc	1	22	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84359097	G	G	84359097	1	3	61	0	1	0	0	0	0	0	0	0	276	1624	56	5		5	ADAMTSL3	15	84359097	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	101653	84359097	18172295	5526	73771											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84373112	84373112	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggtccttactggagccttAtttgtgaccaaatgatcttg	11	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84373112	T	T	84373112	1	4	61	0	1	0	0	0	0	0	0	0	276	464	16	5		5	ADAMTSL3	15	84373112	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	14015	84373112	18158280	5527	73772											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84408942	84408942	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacagggctttagggtttcTtgattttccacagataatac	9	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84408942	G	G	84408942	1	3	61	0	1	0	0	0	0	0	0	0	276	1624	56	5		5	ADAMTSL3	15	84408942	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	35830	84408942	18122450	5528	73773											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84657463	84657463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataattttggatggaactgGgaagatacagatacagaatc	10	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84657463	T	T	84657463	3	4	61	1	0	0	0	0	1	0	0	0	276	1232	43	2	3819	2	ADAMTSL3	15	84657463	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	248521	84657463	17873929	5529	73774											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84660025	84660025	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtaagtgtggccatcccAgtgttgccaggaaacaccag	13	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84660025	G	G	84660025	1	3	61	0	1	0	0	0	0	0	0	0	276	203	7	5		5	ADAMTSL3	15	84660025	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2562	84660025	17871367	5530	73775											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84676632	84676632	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagccatccctaaattcCctgccctggactccacttcc	5	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84676632	T	T	84676632	1	4	61	0	1	0	0	0	0	0	0	0	276	638	22	4		4	ADAMTSL3	15	84676632	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16607	84676632	17854760	5531	73776											
ZNF592	9640	broad.mit.edu	37	chr15	85342601	85342601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcagaaatcaggggcagGtcaaaaatcagcttccagaa	10	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85342601	T	T	85342601	1	4	61	0	1	0	0	0	0	0	0	0	18149	1276	44	3		3	ZNF592	15	85342601	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	665969	85342601	17188791	5532	73777											
ALPK3	57538	broad.mit.edu	37	chr15	85366383	85366383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggtttcagatacattgGtgtccggtggtcaggccagt	13	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85366383	T	T	85366383	1	4	61	0	1	0	0	0	0	0	0	0	546	1276	44	3		3	ALPK3	15	85366383	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23782	85366383	17165009	5533	73778											
SLC28A1	9154	broad.mit.edu	37	chr15	85456037	85456037	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaaattttgcgcgcgcGcacacacacacacacacaca	7	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85456037	A	A	85456037	1	1	61	0	1	0	0	0	0	0	0	0	14645	1102	38	4		4	SLC28A1	15	85456037	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	89654	85456037	17075355	5534	73779											
SLC28A1	9154	broad.mit.edu	37	chr15	85461989	85461989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcccctgttcccagtgcCtccaccttcccagaatcccc	6	20	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85461989	A	A	85461989	1	1	61	0	1	0	0	0	0	0	0	0	14645	696	24	2		2	SLC28A1	15	85461989	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5952	85461989	17069403	5535	73780											
SLC28A1	9154	broad.mit.edu	37	chr15	85484003	85484003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttgcaacatcaacaacGgataggctgggatgttctcc	9	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85484003	T	T	85484003	1	4	61	0	1	0	0	0	0	0	0	0	14645	1131	39	1		1	SLC28A1	15	85484003	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22014	85484003	17047389	5536	73781											
PDE8A	5151	broad.mit.edu	37	chr15	85626803	85626803	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagaggtatgtagaaaaccCcaacatcatggcctgctaca	9	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85626803	T	T	85626803	3	4	61	1	0	0	0	0	1	0	0	0	11747	623	22	4	585	4	PDE8A	15	85626803	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	142800	85626803	16904589	5537	73782											
AKAP13	11214	broad.mit.edu	37	chr15	86050257	86050260	+	Intron	DEL	TGGG	-	-													ttcataaattttactttctcTgggtagcctttgtagtctcc					rs71813519		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86050260	-	-	86050257	6	5	61	0	1	1	0	1	0	0	0	0	449	1595	55	0		0	AKAP13	15	86050257	Intron	DEL	TGGG	TCGA-17-Z031-01A-01W-0746-08	423454	86050257	16481135	5538	73783											
AGBL1	123624	broad.mit.edu	37	chr15	86697684	86697684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagattggacggaaggccCtagaattggaagcacttgat	12	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86697684	A	A	86697684	3	1	61	1	0	0	0	0	1	0	0	0	375	680	24	2	154	2	AGBL1	15	86697684	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	647427	86697684	15833708	5539	73784											
AGBL1	123624	broad.mit.edu	37	chr15	86725559	86725559	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctttgtcatcttaggtttTttgcatgctagggaaattcc	8	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86725559	A	A	86725559	1	1	61	0	1	0	0	0	0	0	0	0	375	1856	64	5		5	AGBL1	15	86725559	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27875	86725559	15805833	5540	73785											
AGBL1	123624	broad.mit.edu	37	chr15	86807601	86807601	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattgctacagcaaggaccAaagctcctgtgggcaagaaa	11	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86807601	T	T	86807601	3	4	61	1	0	0	0	0	1	0	0	0	375	130	5	5	1095	5	AGBL1	15	86807601	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	82042	86807601	15723791	5541	73786											
AGBL1	123624	broad.mit.edu	37	chr15	86823292	86823292	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggacatgggggcatttcTtaagagactctgtctttaaa	11	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86823292	G	G	86823292	1	3	61	0	1	0	0	0	0	0	0	0	375	1624	56	5		5	AGBL1	15	86823292	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15691	86823292	15708100	5542	73787											
AGBL1	123624	broad.mit.edu	37	chr15	87097715	87097715	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagagagatgggggtgtccAgaagctacaccatggaaagc	16	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87097715	G	G	87097715	3	3	61	1	0	0	0	0	1	0	0	0	375	180	7	5	2877	5	AGBL1	15	87097715	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	274423	87097715	15433677	5543	73788											
AGBL1	123624	broad.mit.edu	37	chr15	87135801	87135801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcacttgggaggggccGtgtgtgcagtgtgtttactg	17	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87135801	T	T	87135801	1	4	61	0	1	0	0	0	0	0	0	0	375	1160	40	3		3	AGBL1	15	87135801	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38086	87135801	15395591	5544	73789											
AGBL1	123624	broad.mit.edu	37	chr15	87182480	87182480	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatagagatcactgagggTcatcttggaagtctgcctac	12	8	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87182480	A	A	87182480	1	1	61	0	1	0	0	0	0	0	0	0	375	1682	58	5		5	AGBL1	15	87182480	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	46679	87182480	15348912	5545	73790											
AGBL1	123624	broad.mit.edu	37	chr15	87235392	87235392	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcactccagcctgggtgacaCagcaagactccatctcaaaa	8	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87235392	T	T	87235392	1	4	61	0	1	0	0	0	0	0	0	0	375	493	17	4		4	AGBL1	15	87235392	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	52912	87235392	15296000	5546	73791											
AGBL1	123624	broad.mit.edu	37	chr15	87437826	87437826	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagaatggggaattatctgGaatgagcaaacagttaataa	11	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87437826	T	T	87437826	1	4	61	0	1	0	0	0	0	0	0	0	375	1189	41	3		3	AGBL1	15	87437826	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	202434	87437826	15093566	5547	73792											
AGBL1	123624	broad.mit.edu	37	chr15	87572167	87572167	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaaaccttcaagatgttGtacatgtcttatggaaaatg	8	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87572167	A	A	87572167	1	1	61	0	1	0	0	0	0	0	0	0	375	1392	48	4		4	AGBL1	15	87572167	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	134341	87572167	14959225	5548	73793											
NTRK3	4916	broad.mit.edu	37	chr15	88474545	88474545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaaggacaaagtgaggGctatcccgaatattgagaaa	10	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88474545	T	T	88474545	1	4	61	0	1	0	0	0	0	0	0	0	10803	1218	42	3		3	NTRK3	15	88474545	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	902378	88474545	14056847	5549	73794											
NTRK3	4916	broad.mit.edu	37	chr15	88483801	88483801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcctcttccttccctcCctgggccctcagccagccct	9	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88483801	A	A	88483801	1	1	61	0	1	0	0	0	0	0	0	0	10803	638	22	2		2	NTRK3	15	88483801	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9256	88483801	14047591	5550	73795											
NTRK3	4916	broad.mit.edu	37	chr15	88501990	88501990	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctcacctgggcaggggtCtcccaaactgagcttccatt	9	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88501990	A	A	88501990	1	1	61	0	1	0	0	0	0	0	0	0	10803	928	32	3		3	NTRK3	15	88501990	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18189	88501990	14029402	5551	73796											
NTRK3	4916	broad.mit.edu	37	chr15	88548702	88548702	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaaagtctgtccgccctaAaacacactgttctgcatgga	7	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88548702	G	G	88548702	1	3	61	0	1	0	0	0	0	0	0	0	10803	29	1	5		5	NTRK3	15	88548702	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	46712	88548702	13982690	5552	73797											
NTRK3	4916	broad.mit.edu	37	chr15	88576293	88576293	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacctgcacacaccaagagAgacgcaggacctggtgacgt	13	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88576293	G	G	88576293	1	3	61	0	1	0	0	0	0	0	0	0	10803	319	11	5		5	NTRK3	15	88576293	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	27591	88576293	13955099	5553	73798											
NTRK3	4916	broad.mit.edu	37	chr15	88693349	88693349	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtagccagaaagctcagActtattgagccctgaagaac	10	9	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88693349	T	T	88693349	1	4	61	0	1	0	0	0	0	0	0	0	10803	290	10	5		5	NTRK3	15	88693349	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	117056	88693349	13838043	5554	73799											
NTRK3	4916	broad.mit.edu	37	chr15	88724463	88724463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcatgggcaggttcaatGgtatccttgggtcctcctcc	11	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88724463	T	T	88724463	1	4	61	0	1	0	0	0	0	0	0	0	10803	1363	47	2		2	NTRK3	15	88724463	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31114	88724463	13806929	5555	73800											
DET1	55070	broad.mit.edu	37	chr15	89073702	89073702	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatacatatgaccagagaAaaatggagctgattttaagt	8	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89073702	C	C	89073702	1	2	61	0	1	0	0	0	0	0	0	0	4490	29	1	5		5	DET1	15	89073702	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	349239	89073702	13457690	5556	73801											
ACAN	176	broad.mit.edu	37	chr15	89386934	89386934	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccactaaaatggggtcctaGagggaagaggggatcttgga	16	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89386934	T	T	89386934	1	4	61	0	1	0	0	0	0	0	0	0	117	957	33	3		3	ACAN	15	89386934	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	313232	89386934	13144458	5557	73802											
ACAN	176	broad.mit.edu	37	chr15	89401263	89401263	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaggagtccctgacctggTttctggtaccacgagtggca	12	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89401263	A	A	89401263	3	1	61	1	0	0	0	0	1	0	0	0	117	1725	60	5	5489	5	ACAN	15	89401263	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	14329	89401263	13130129	5558	73803											
MFGE8	4240	broad.mit.edu	37	chr15	89444229	89444229	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacattcacacacaCacattcacacacacacacac	0	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89444229	T	T	89444229	1	4	61	0	1	0	0	0	0	0	0	0	9613	493	17	4		4	MFGE8	15	89444229	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42966	89444229	13087163	5559	73804											
FANCI	55215	broad.mit.edu	37	chr15	89828253	89828253	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaagttttttcgaccaagaAcataggctcatttagctcct	6	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89828253	G	G	89828253	1	3	61	0	1	0	0	0	0	0	0	0	5726	58	2	5		5	FANCI	15	89828253	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	384024	89828253	12703139	5560	73805											
KIF7	374654	broad.mit.edu	37	chr15	90190721	90190721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgactctacacccctaccCcgcagtaccctaccctaact	3	21	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90190721	A	A	90190721	1	1	61	0	1	0	0	0	0	0	0	0	8379	638	22	2		2	KIF7	15	90190721	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	362468	90190721	12340671	5561	73806											
PLIN1	5346	broad.mit.edu	37	chr15	90210328	90210328	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgcaggtgcccatgtcaCagccgagatggtggtctgga	15	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90210328	G	G	90210328	3	3	61	1	0	0	0	0	1	0	0	0	12184	478	17	4	528	4	PLIN1	15	90210328	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19607	90210328	12321064	5562	73807											
PLIN1	5346	broad.mit.edu	37	chr15	90210688	90210688	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggaagtccctcgccagctGggcatttgggggtggggtga	18	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90210688	C	C	90210688	1	2	61	0	1	0	0	0	0	0	0	0	12184	1363	47	4		4	PLIN1	15	90210688	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	360	90210688	12320704	5563	73808											
FURIN	5045	broad.mit.edu	37	chr15	91419749	91419749	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaaacgggacgtgtaccagGagcccacagaccccaagttt	10	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91419749	T	T	91419749	4	4	61	1	0	0	0	0	0	1	0	0	6159	1175	41	3	344	3	FURIN	15	91419749	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1209061	91419749	11111643	5564	73809											
SLCO3A1	28232	broad.mit.edu	37	chr15	92583285	92583285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggccagttggaggcttgGgggcaaggggagggagagca	22	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92583285	T	T	92583285	1	4	61	0	1	0	0	0	0	0	0	0	14842	1247	43	2		2	SLCO3A1	15	92583285	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1163536	92583285	9948107	5565	73810											
ST8SIA2	8128	broad.mit.edu	37	chr15	93011194	93011194	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccaagtggatcatctgtGtccccttcccccacaatccc	6	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93011194	T	T	93011194	1	4	61	0	1	0	0	0	0	0	0	0	15350	1392	48	3		3	ST8SIA2	15	93011194	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	427909	93011194	9520198	5566	73811											
ARRDC4	91947	broad.mit.edu	37	chr15	98497441	98497442	+	Intron	INS	-	A	A													tttccttcaaactttccttcINSaagtaaaaaagctctgttat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98497442	A	A	98497441	6	5	61	0	1	1	1	0	0	0	0	0	989	841	29	0		0	ARRDC4	15	98497441	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	5486247	98497441	4033951	5567	73812											
IGF1R	3480	broad.mit.edu	37	chr15	99459972	99459972	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacagagaaccccaagactGaggtgtgtggtggggagaaa	15	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99459972	T	T	99459972	4	4	61	1	0	0	0	0	0	1	0	0	7641	1291	45	3	2106	3	IGF1R	15	99459972	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	962531	99459972	3071420	5568	73813											
IGF1R	3480	broad.mit.edu	37	chr15	99491630	99491630	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaacattagcagcaacagAgggaggatgatatcccgcac	13	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99491630	T	T	99491630	1	4	61	0	1	0	0	0	0	0	0	0	7641	319	11	5		5	IGF1R	15	99491630	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	31658	99491630	3039762	5569	73814											
MEF2A	4205	broad.mit.edu	37	chr15	100230591	100230591	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaggaaaccagatcttcgAgttgtcatccccccttcaag	8	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100230591	T	T	100230591	2	4	61	1	0	0	0	0	0	0	0	1	9548	291	11	5		5	MEF2A	15	100230591	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	738961	100230591	2300801	5570	73815											
ADAMTS17	170691	broad.mit.edu	37	chr15	100537704	100537704	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcgtagcgacgtgtgtgccGttctgcagctggtacacgca	14	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100537704	C	C	100537704	3	2	61	1	0	0	0	0	1	0	0	0	262	1136	40	4	621	4	ADAMTS17	15	100537704	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	307113	100537704	1993688	5571	73816											
ADAMTS17	170691	broad.mit.edu	37	chr15	100673391	100673391	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaagatgtggagctgcctgTtgggggcagtgggaagtcag	19	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100673391	A	A	100673391	1	1	61	0	1	0	0	0	0	0	0	0	262	1740	60	5		5	ADAMTS17	15	100673391	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	135687	100673391	1858001	5572	73817											
ADAMTS17	170691	broad.mit.edu	37	chr15	100871001	100871001	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatataggggaaggtaagtTctcactcatgtggcttcagt	11	6	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100871001	C	C	100871001	1	2	61	0	1	0	0	0	0	0	0	0	262	1798	62	5		5	ADAMTS17	15	100871001	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	197610	100871001	1660391	5573	73818											
LRRK1	79705	broad.mit.edu	37	chr15	101598268	101598268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatgtatgaactgtgctGtgggaagcagacagccttct	11	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101598268	T	T	101598268	3	4	61	1	0	0	0	0	1	0	0	0	9119	1377	48	3	4711	3	LRRK1	15	101598268	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	727267	101598268	933124	5574	73819											
LRRK1	79705	broad.mit.edu	37	chr15	101608788	101608788	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcccttagccagctccGccttcctcagaaggcacagg	9	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101608788	A	A	101608788	1	1	61	0	1	0	0	0	0	0	0	0	9119	1102	38	4		4	LRRK1	15	101608788	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10520	101608788	922604	5575	73820											
PDIA2	64714	broad.mit.edu	37	chr16	332393	332393	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagagccggggcaatggGcggaggggatgggggtgggg	27	4	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	332393	C	C	332393	1	2	61	0	1	0	0	0	0	0	0	0	11762	1218	42	4		4	PDIA2	16	332393	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08		332393	90022360	5576	73821											
RAB11FIP3	9727	broad.mit.edu	37	chr16	502650	502650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccatgttagccaggatGgtctcgatctcctgacctcg	9	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	502650	T	T	502650	1	4	61	0	1	0	0	0	0	0	0	0	13003	1363	47	2		2	RAB11FIP3	16	502650	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	170257	502650	89852103	5577	73822											
CACNA1H	8912	broad.mit.edu	37	chr16	1245994	1245994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaccgtgcgggtgctgcGgcccctccgcgccatcaacc	13	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1245994	T	T	1245994	3	4	61	1	0	0	0	0	1	0	0	0	2571	1116	39	1	628	1	CACNA1H	16	1245994	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	743344	1245994	89108759	5578	73823											
BAIAP3	8938	broad.mit.edu	37	chr16	1394694	1394694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgtgtacgccagcctcttCcacaggtgggcctggcccct	12	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1394694	A	A	1394694	3	1	61	1	0	0	0	0	1	0	0	0	1309	854	30	3	1931	3	BAIAP3	16	1394694	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	148700	1394694	88960059	5579	73824											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1812742	1812742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggcagttgtaagctggGggcccctgggggatgtgggc	19	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1812742	T	T	1812742	1	4	61	0	1	0	0	0	0	0	0	0	9378	1247	43	2		2	MAPK8IP3	16	1812742	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	418048	1812742	88542011	5580	73825											
TBL3	10607	broad.mit.edu	37	chr16	2026110	2026110	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctctttgccagctgtGccaaggtgaggcaccctgag	15	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2026110	A	A	2026110	3	1	61	1	0	0	0	0	1	0	0	0	15765	1319	46	4	1229	4	TBL3	16	2026110	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	213368	2026110	88328643	5581	73826											
CASKIN1	57524	broad.mit.edu	37	chr16	2237394	2237394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgtctttccgcagagcGcagcctcgtgcagggccgtg	13	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2237394	T	T	2237394	3	4	61	1	0	0	0	0	1	0	0	0	2692	1087	38	3	3665	3	CASKIN1	16	2237394	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	211284	2237394	88117359	5582	73827											
C16orf79	283870	broad.mit.edu	37	chr16	2259431	2259431	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagcagatgtcgatgcagaGataaatcagccgctgtctcc	11	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2259431	C	C	2259431	3	2	61	1	0	0	0	0	1	0	0	0	1850	942	33	4	71	4	C16orf79	16	2259431	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22037	2259431	88095322	5583	73828											
PDPK1	5170	broad.mit.edu	37	chr16	2607912	2607912	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcagcctcggaagaagcGgcctgaggacttcaagtttg	14	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2607912	A	A	2607912	3	1	61	1	0	0	0	0	1	0	0	0	11781	1116	39	4	239	4	PDPK1	16	2607912	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	348481	2607912	87746841	5584	73829											
CLDN9	9080	broad.mit.edu	37	chr16	3063874	3063874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacctgggctgggcggcgGctgcactgcttatgctgggc	16	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3063874	T	T	3063874	3	4	61	1	0	0	0	0	1	0	0	0	3524	1203	42	3	513	3	CLDN9	16	3063874	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	455962	3063874	87290879	5585	73830											
THOC6	79228	broad.mit.edu	37	chr16	3076322	3076322	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtggatagagggtgcatcAgggtgaagccacttcctcac	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3076322	G	G	3076322	1	3	61	0	1	0	0	0	0	0	0	0	15992	203	7	5		5	THOC6	16	3076322	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12448	3076322	87278431	5586	73831											
ZNF174	7727	broad.mit.edu	37	chr16	3458302	3458302	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtgcagaaaatgaagcAttttctttctaattatagag	7	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3458302	G	G	3458302	1	3	61	0	1	0	0	0	0	0	0	0	17870	232	8	5		5	ZNF174	16	3458302	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	381980	3458302	86896451	5587	73832											
CREBBP	1387	broad.mit.edu	37	chr16	3860403	3860403	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaagagcggctgaatcatCctcacctatctctcctgttg	10	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3860403	A	A	3860403	1	1	61	0	1	0	0	0	0	0	0	0	3893	870	30	3		3	CREBBP	16	3860403	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	402101	3860403	86494350	5588	73833											
A2BP1	54715	broad.mit.edu	37	chr16	6417314	6417314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtctcacaccgttgccTgggctggagtgcaatggtgt	14	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6417314	A	A	6417314	1	1	61	0	1	0	0	0	0	0	0	0	3	1595	55	5		5	A2BP1	16	6417314	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2556911	6417314	83937439	5589	73834											
A2BP1	54715	broad.mit.edu	37	chr16	6484277	6484277	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggtaacacattcagagGttctggagatgaggacatgg	14	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6484277	C	C	6484277	1	2	61	0	1	0	0	0	0	0	0	0	3	1276	44	4		4	A2BP1	16	6484277	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66963	6484277	83870476	5590	73835											
A2BP1	54715	broad.mit.edu	37	chr16	6569959	6569959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgagcaggtgctttggGtcagtaggcatggtattaaa	14	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6569959	T	T	6569959	1	4	61	0	1	0	0	0	0	0	0	0	3	1276	44	3		3	A2BP1	16	6569959	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	85682	6569959	83784794	5591	73836											
A2BP1	54715	broad.mit.edu	37	chr16	7138735	7138735	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagccaataaagagcatgtGtgaatttcttatgccagtaa	8	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7138735	A	A	7138735	1	1	61	0	1	0	0	0	0	0	0	0	3	1392	48	4		4	A2BP1	16	7138735	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	568776	7138735	83216018	5592	73837											
A2BP1	54715	broad.mit.edu	37	chr16	7176392	7176392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacaagatcaattcctgaCtactttactgtgaactgtgc	6	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7176392	A	A	7176392	1	1	61	0	1	0	0	0	0	0	0	0	3	580	20	3		3	A2BP1	16	7176392	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37657	7176392	83178361	5593	73838											
A2BP1	54715	broad.mit.edu	37	chr16	7208726	7208729	+	Intron	DEL	TGTT	-	-													tgcatatgtgtgcatgcatcTgtttggtgtgtgttgtttct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7208729	-	-	7208726	6	5	61	0	1	1	0	1	0	0	0	0	3	1595	55	0		0	A2BP1	16	7208726	Intron	DEL	TGTT	TCGA-17-Z031-01A-01W-0746-08	32334	7208726	83146027	5594	73839											
TMEM186	25880	broad.mit.edu	37	chr16	8890542	8890542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatactctaaggcttctgCcaatcctgcaaggtaaccgt	7	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8890542	A	A	8890542	1	1	61	0	1	0	0	0	0	0	0	0	16231	754	26	3		3	TMEM186	16	8890542	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1681816	8890542	81464211	5595	73840											
EMP2	2013	broad.mit.edu	37	chr16	10626928	10626930	+	In_Frame_Del	DEL	GCC	-	-													gcctgtctgtataaatggagGccgcaatcatgacacacaga					rs147528512		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10626930	-	-	10626928	7	5	61	1	0	1	0	1	0	0	0	0	5144	1203	42	0	169	0	EMP2	16	10626928	In_Frame_Del	DEL	GCC	TCGA-17-Z031-01A-01W-0746-08	1736386	10626928	79727825	5596	73841											
FAM18A	780776	broad.mit.edu	37	chr16	10867350	10867350	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagtggaaatggttgcaaaCgagcgtgctcacattttcat	10	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10867350	G	G	10867350	1	3	61	0	1	0	0	0	0	0	0	0	5565	551	19	4		4	FAM18A	16	10867350	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	240422	10867350	79487403	5597	73842											
CLEC16A	23274	broad.mit.edu	37	chr16	11056252	11056252	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtgaatgaaaccagatAataatttctgtttccacatg	7	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11056252	G	G	11056252	1	3	61	0	1	0	0	0	0	0	0	0	3532	377	13	5		5	CLEC16A	16	11056252	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	188902	11056252	79298501	5598	73843											
TXNDC11	51061	broad.mit.edu	37	chr16	11782228	11782228	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attaaatgctgagacgggaaCtgggcagagccacttccaat	11	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11782228	G	G	11782228	3	3	61	1	0	0	0	0	1	0	0	0	16918	564	20	4	918	4	TXNDC11	16	11782228	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	725976	11782228	78572525	5599	73844											
SNX29	92017	broad.mit.edu	37	chr16	12497316	12497316	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggttagatcaaaccgggCgctgatcaacgtctggatcc	11	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12497316	T	T	12497316	3	4	61	1	0	0	0	0	1	0	0	0	15012	768	27	4	850	4	SNX29	16	12497316	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	715088	12497316	77857437	5600	73845											
SNX29	92017	broad.mit.edu	37	chr16	12648243	12648244	+	Intron	INS	-	T	T													tgaaggtgtttctgtgccccINSgtgcatgggtgtgcatcgtc					rs72530767	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12648244	T	T	12648243	6	5	61	0	1	1	1	0	0	0	0	0	15012	667	23	0		0	SNX29	16	12648243	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	150927	12648243	77706510	5601	73846											
ERCC4	2072	broad.mit.edu	37	chr16	14038813	14038813	+	Intron	DEL	G	-	-													aaaaatgggggttgggccaaGgagaggatgtgtacttccct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14038813	-	-	14038813	6	5	61	0	1	1	0	1	0	0	0	0	5257	1015	35	0		0	ERCC4	16	14038813	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	1390570	14038813	76315940	5602	73847											
MKL2	57496	broad.mit.edu	37	chr16	14327908	14327908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgcttcttttctagtgGgcttaaaaaccaggtcattc	7	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14327908	T	T	14327908	1	4	61	0	1	0	0	0	0	0	0	0	9695	1247	43	2		2	MKL2	16	14327908	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	289095	14327908	76026845	5603	73848											
MKL2	57496	broad.mit.edu	37	chr16	14334351	14334351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccattcaagtacggcggGgcccatgctatcctcaacgc	10	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14334351	T	T	14334351	1	4	61	0	1	0	0	0	0	0	0	0	9695	1247	43	2		2	MKL2	16	14334351	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6443	14334351	76020402	5604	73849											
PARN	5073	broad.mit.edu	37	chr16	14576590	14576590	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagctatcttcagtccaCtttcttttgatctgcttctc	4	13	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14576590	T	T	14576590	2	4	61	1	0	0	0	0	0	0	0	1	11547	564	20	4		4	PARN	16	14576590	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	242239	14576590	75778163	5605	73850											
MYH11	4629	broad.mit.edu	37	chr16	15813705	15813705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcccattgcacgagcatgGctctcagttccaggtggctg	12	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15813705	T	T	15813705	1	4	61	0	1	0	0	0	0	0	0	0	10125	1218	42	3		3	MYH11	16	15813705	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1237115	15813705	74541048	5606	73851											
IQCK	124152	broad.mit.edu	37	chr16	19729520	19729520	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctccacgtgagagccagctCcgccgtgacccggaagtcca	11	17	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19729520	A	A	19729520	1	1	61	0	1	0	0	0	0	0	0	0	7883	870	30	3		3	IQCK	16	19729520	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3915815	19729520	70625233	5607	73852											
GP2	2813	broad.mit.edu	37	chr16	20335513	20335513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacagacatgagcctctgGggtgccaggagctccgcagt	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20335513	T	T	20335513	3	4	61	1	0	0	0	0	1	0	0	0	6647	1232	43	2	1493	2	GP2	16	20335513	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	605993	20335513	70019240	5608	73853											
UMOD	7369	broad.mit.edu	37	chr16	20357559	20357559	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtcactcaggtacatgaaGaccttgtcgaagcccagact	9	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20357559	T	T	20357559	2	4	61	1	0	0	0	0	0	0	0	1	17105	929	33	3		3	UMOD	16	20357559	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22046	20357559	69997194	5609	73854											
UMOD	7369	broad.mit.edu	37	chr16	20362075	20362075	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcctttctgctcttccCgctacttcaggtctagatag	6	15	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20362075	A	A	20362075	1	1	61	0	1	0	0	0	0	0	0	0	17105	667	23	1		1	UMOD	16	20362075	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4516	20362075	69992678	5610	73855											
ACSM5	54988	broad.mit.edu	37	chr16	20422935	20422935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacctgggaagccatcagCctgggaaggcagctggtgcc	15	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20422935	A	A	20422935	3	1	61	1	0	0	0	0	1	0	0	0	187	738	26	3	131	3	ACSM5	16	20422935	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60860	20422935	69931818	5611	73856											
ACSM2B	348158	broad.mit.edu	37	chr16	20559516	20559516	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaacttgtaactgaagaaGagaaataaatgtttgccctc	10	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20559516	T	T	20559516	1	4	61	0	1	0	0	0	0	0	0	0	184	957	33	3		3	ACSM2B	16	20559516	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	136581	20559516	69795237	5612	73857											
ANKS4B	257629	broad.mit.edu	37	chr16	21261872	21261872	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaacggcctcaaagatgatCtgccgtgggatgacgatgaa	12	8	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21261872	A	A	21261872	3	1	61	1	0	0	0	0	1	0	0	0	691	912	32	3	991	3	ANKS4B	16	21261872	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	702356	21261872	69092881	5613	73858											
VWA3A	146177	broad.mit.edu	37	chr16	22144347	22144347	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccgctatgccagtcacactGacacagccgccgcctacaag	8	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22144347	C	C	22144347	3	2	61	1	0	0	0	0	1	0	0	0	17367	1290	45	4	2077	4	VWA3A	16	22144347	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	882475	22144347	68210406	5614	73859											
VWA3A	146177	broad.mit.edu	37	chr16	22158801	22158801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcctggagggtttctggGgcatcaggaggagggaggaa	22	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22158801	A	A	22158801	1	1	61	0	1	0	0	0	0	0	0	0	17367	1247	43	4		4	VWA3A	16	22158801	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14454	22158801	68195952	5615	73860											
VWA3A	146177	broad.mit.edu	37	chr16	22167328	22167328	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaataataactttggttAaaaaataatgattcctctaa	5	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22167328	T	T	22167328	1	4	61	0	1	0	0	0	0	0	0	0	17367	377	13	5		5	VWA3A	16	22167328	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	8527	22167328	68187425	5616	73861											
EEF2K	29904	broad.mit.edu	37	chr16	22284810	22284810	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctctggagtcaagtgcccCctcctatctcacttctatag	7	15	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22284810	T	T	22284810	1	4	61	0	1	0	0	0	0	0	0	0	4970	638	22	4		4	EEF2K	16	22284810	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	117482	22284810	68069943	5617	73862											
USP31	57478	broad.mit.edu	37	chr16	23099057	23099057	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaaacctgaatgcaaacCgtgggcctcaagaaatactt	7	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23099057	A	A	23099057	2	1	61	1	0	0	0	0	0	0	0	1	17189	639	23	1		1	USP31	16	23099057	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	814247	23099057	67255696	5618	73863											
SCNN1G	6340	broad.mit.edu	37	chr16	23226313	23226313	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagcctgtgcagggtcGgggctgacccgtggctccct	14	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23226313	T	T	23226313	1	4	61	0	1	0	0	0	0	0	0	0	14043	1131	39	1		1	SCNN1G	16	23226313	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	127256	23226313	67128440	5619	73864											
GGA2	23062	broad.mit.edu	37	chr16	23504791	23504791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcacctgcacagacaCaggacccccaggagaaggtg	11	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23504791	A	A	23504791	1	1	61	0	1	0	0	0	0	0	0	0	6417	493	17	3		3	GGA2	16	23504791	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	278478	23504791	66849962	5620	73865											
UBFD1	56061	broad.mit.edu	37	chr16	23570949	23570949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagatgctgcgcagcaGgatgcaaaggccgaagagaa	13	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23570949	T	T	23570949	3	4	61	1	0	0	0	0	1	0	0	0	17010	991	35	2	526	2	UBFD1	16	23570949	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66158	23570949	66783804	5621	73866											
PRKCB	5579	broad.mit.edu	37	chr16	23876366	23876366	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctccagctgcatccatgTtgctgcaaaggacacaatcc	9	14	0	0	rs117930376	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23876366	C	C	23876366	1	2	61	0	1	0	0	0	0	0	0	0	12614	1740	60	5		5	PRKCB	16	23876366	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	305417	23876366	66478387	5622	73867											
PRKCB	5579	broad.mit.edu	37	chr16	24046662	24046662	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaaacaggaagggctcagCggtcttgggtggggcagatg	20	6	2	1	rs112842992		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24046662	G	G	24046662	1	3	61	0	1	0	0	0	0	0	0	0	12614	783	27	4		4	PRKCB	16	24046662	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	170296	24046662	66308091	5623	73868											
PRKCB	5579	broad.mit.edu	37	chr16	24180633	24180633	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatggtgctgggctgttgGtacacagcggtaaacaaatt	14	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24180633	A	A	24180633	1	1	61	0	1	0	0	0	0	0	0	0	12614	1276	44	4		4	PRKCB	16	24180633	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	133971	24180633	66174120	5624	73869											
PRKCB	5579	broad.mit.edu	37	chr16	24196450	24196450	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agataattgcttatcagcccTatgggaagtccgtggattgg	12	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24196450	A	A	24196450	3	1	61	1	0	0	0	0	1	0	0	0	12614	1522	53	5	1606	5	PRKCB	16	24196450	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	15817	24196450	66158303	5625	73870											
RBBP6	5930	broad.mit.edu	37	chr16	24572855	24572855	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgtaactgaacaaatgtgGaccatccttttaattcattt	5	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24572855	T	T	24572855	1	4	61	0	1	0	0	0	0	0	0	0	13211	1189	41	3		3	RBBP6	16	24572855	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	376405	24572855	65781898	5626	73871											
TNRC6A	27327	broad.mit.edu	37	chr16	24741476	24741476	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctcccccatccggccCcggcgcgagcctctgccgca	9	24	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24741476	T	T	24741476	1	4	61	0	1	0	0	0	0	0	0	0	16463	638	22	4		4	TNRC6A	16	24741476	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	168621	24741476	65613277	5627	73872											
SLC5A11	115584	broad.mit.edu	37	chr16	24918337	24918337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcccatgacctcccttcCgcccccagggctccgtgggc	12	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24918337	A	A	24918337	1	1	61	0	1	0	0	0	0	0	0	0	14777	667	23	1		1	SLC5A11	16	24918337	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	176861	24918337	65436416	5628	73873											
SLC5A11	115584	broad.mit.edu	37	chr16	24919528	24919528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataggatgggaggggaggGtgttggagggagacacaggc	23	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24919528	T	T	24919528	1	4	61	0	1	0	0	0	0	0	0	0	14777	1276	44	3		3	SLC5A11	16	24919528	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1191	24919528	65435225	5629	73874											
SLC5A11	115584	broad.mit.edu	37	chr16	24922713	24922713	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggctctgtggaatacaggaGaagggcaaggaagagctccc	15	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24922713	C	C	24922713	3	2	61	1	0	0	0	0	1	0	0	0	14777	933	33	4	1945	4	SLC5A11	16	24922713	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3185	24922713	65432040	5630	73875											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25251549	25251549	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccacactctccgcatctgTagggtttctctcctgtgtgg	9	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25251549	A	A	25251549	3	1	61	1	0	0	0	0	1	0	0	0	17813	1638	57	5	415	5	ZKSCAN2	16	25251549	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	328836	25251549	65103204	5631	73876											
HS3ST4	9951	broad.mit.edu	37	chr16	25867911	25867911	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggccacaatggaagaAgaagaattgtcttgggccat	12	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25867911	C	C	25867911	1	2	61	0	1	0	0	0	0	0	0	0	7434	87	3	5		5	HS3ST4	16	25867911	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	616362	25867911	64486842	5632	73877											
HS3ST4	9951	broad.mit.edu	37	chr16	25908539	25908539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcccagcactttggaagGccaaggcaggagctcacttg	11	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25908539	T	T	25908539	1	4	61	0	1	0	0	0	0	0	0	0	7434	1218	42	3		3	HS3ST4	16	25908539	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40628	25908539	64446214	5633	73878											
IL21R	50615	broad.mit.edu	37	chr16	27445835	27445835	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgctcagtgattccccCaggaggacactgtgcactga	11	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27445835	G	G	27445835	1	3	61	0	1	0	0	0	0	0	0	0	7741	609	21	4		4	IL21R	16	27445835	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1537296	27445835	62908918	5634	73879											
GSG1L	146395	broad.mit.edu	37	chr16	27839073	27839073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccagccagccttctgcCtgtctgtccttccactcata	5	17	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27839073	A	A	27839073	1	1	61	0	1	0	0	0	0	0	0	0	6887	696	24	2		2	GSG1L	16	27839073	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	393238	27839073	62515680	5635	73880											
GSG1L	146395	broad.mit.edu	37	chr16	28064809	28064809	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggactggagggcagagtcAgatgagggagggtctggtct	21	5	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28064809	G	G	28064809	1	3	61	0	1	0	0	0	0	0	0	0	6887	203	7	5		5	GSG1L	16	28064809	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	225736	28064809	62289944	5636	73881											
SBK1	388228	broad.mit.edu	37	chr16	28314417	28314417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacttgcccccagacagggGgctggcatgttcagggaaca	15	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28314417	T	T	28314417	1	4	61	0	1	0	0	0	0	0	0	0	13972	1247	43	2		2	SBK1	16	28314417	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	249608	28314417	62040336	5637	73882											
APOB48R	55911	broad.mit.edu	37	chr16	28508886	28508886	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaccttggggagggcgggtaGaggccgaggaatctgcaggc	20	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28508886	T	T	28508886	4	4	61	1	0	0	0	0	0	1	0	0	788	943	33	3	2507	3	APOB48R	16	28508886	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	194469	28508886	61845867	5638	73883											
NFATC2IP	84901	broad.mit.edu	37	chr16	28975070	28975070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccactatgaggaggccatGggactgtcgggacggaagct	15	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28975070	T	T	28975070	3	4	61	1	0	0	0	0	1	0	0	0	10458	1348	47	2	1176	2	NFATC2IP	16	28975070	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	466184	28975070	61379683	5639	73884											
SPNS1	83985	broad.mit.edu	37	chr16	28993708	28993708	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactcatcacctgcctgaccGgagtcctgggtgtgggcctg	14	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28993708	A	A	28993708	3	1	61	1	0	0	0	0	1	0	0	0	15192	1117	39	4	1027	4	SPNS1	16	28993708	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18638	28993708	61361045	5640	73885											
ITGAL	3683	broad.mit.edu	37	chr16	30494999	30494999	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaaagaggtttagaggTgactgctgcaggcttggaat	15	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30494999	G	G	30494999	1	3	61	0	1	0	0	0	0	0	0	0	7956	1711	59	5		5	ITGAL	16	30494999	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1501291	30494999	59859754	5641	73886											
FBRS	64319	broad.mit.edu	37	chr16	30679659	30679660	+	Intron	INS	-	G	G													ctgttttatcatcttcaagtINSgggcatgatcctaaccacct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30679660	G	G	30679659	6	5	61	0	1	1	1	0	0	0	0	0	5764	1711	59	0		0	FBRS	16	30679659	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	184660	30679659	59675094	5642	73887											
RNF40	9810	broad.mit.edu	37	chr16	30777684	30777684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttgctgatcccatttgGgcatccctgccccaggtggc	11	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30777684	T	T	30777684	1	4	61	0	1	0	0	0	0	0	0	0	13604	1247	43	2		2	RNF40	16	30777684	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98025	30777684	59577069	5643	73888											
PRSS36	146547	broad.mit.edu	37	chr16	31155228	31155229	+	Intron	DNP	TT	AA	AA													aaaaggtcctgcacctccttTtggcccaacatacaccacct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31155229	AA	AA	31155228	1	1	61	0	1	0	0	0	0	0	0	0	12731	1856	64	5		5	PRSS36	16	31155228	Intron	DNP	TT	TCGA-17-Z031-01A-01W-0746-08	377544	31155228	59199525	5644	73889											
ITGAM	3684	broad.mit.edu	37	chr16	31288416	31288416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaaggggtgaggatttGgcataagtcaactagcatag	13	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31288416	T	T	31288416	1	4	61	0	1	0	0	0	0	0	0	0	7957	1363	47	2		2	ITGAM	16	31288416	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	133188	31288416	59066337	5645	73890											
ITGAX	3687	broad.mit.edu	37	chr16	31372528	31372528	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggagaagatctttgccAttgagggtgagtctgaaggg	16	4	2	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31372528	T	T	31372528	3	4	61	1	0	0	0	0	1	0	0	0	7959	217	8	5	1040	5	ITGAX	16	31372528	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	84112	31372528	58982225	5646	73891											
ITGAX	3687	broad.mit.edu	37	chr16	31372909	31372909	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacggacacctggccccctcGggtctgcttgtagacctgtg	12	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31372909	C	C	31372909	1	2	61	0	1	0	0	0	0	0	0	0	7959	1131	39	4		4	ITGAX	16	31372909	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	381	31372909	58981844	5647	73892											
ITGAD	3681	broad.mit.edu	37	chr16	31404754	31404754	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggagaagcttggaggagttCtgaggggactccatctggga	18	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31404754	A	A	31404754	1	1	61	0	1	0	0	0	0	0	0	0	7954	928	32	3		3	ITGAD	16	31404754	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31845	31404754	58949999	5648	73893											
ITGAD	3681	broad.mit.edu	37	chr16	31422424	31422424	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctacttcggggcctccctcTgctctgtggatgtggacagc	12	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422424	A	A	31422424	3	1	61	1	0	0	0	0	1	0	0	0	7954	1580	55	5	1434	5	ITGAD	16	31422424	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17670	31422424	58932329	5649	73894											
ITGAD	3681	broad.mit.edu	37	chr16	31424696	31424696	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacctgtgccagaaacCtggctcattctctcccctct	5	18	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31424696	A	A	31424696	1	1	61	0	1	0	0	0	0	0	0	0	7954	696	24	2		2	ITGAD	16	31424696	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2272	31424696	58930057	5650	73895											
ITGAD	3681	broad.mit.edu	37	chr16	31435184	31435184	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggactgctccattgctgacTgcctgcagttccgctgtgac	11	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31435184	A	A	31435184	3	1	61	1	0	0	0	0	1	0	0	0	7954	1580	55	5	3170	5	ITGAD	16	31435184	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	10488	31435184	58919569	5651	73896											
TGFB1I1	7041	broad.mit.edu	37	chr16	31484939	31484939	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctcggcctggtctatgggGatctcagcctcagtggggca	16	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31484939	T	T	31484939	1	4	61	0	1	0	0	0	0	0	0	0	15940	1189	41	3		3	TGFB1I1	16	31484939	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49755	31484939	58869814	5652	73897											
AHSP	51327	broad.mit.edu	37	chr16	31539908	31539908	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgagacaaggctctgcagGagcttcggcaagagctgaac	14	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31539908	A	A	31539908	3	1	61	1	0	0	0	0	1	0	0	0	421	1175	41	4	211	4	AHSP	16	31539908	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54969	31539908	58814845	5653	73898											
ITFG1	81533	broad.mit.edu	37	chr16	47294485	47294486	+	Missense_Mutation	DNP	CC	AG	AG													aatgtcaaagaaggtggcaaCcatggcatccttaatttgat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	47294486	AG	AG	47294485	3	1	61	1	0	0	0	0	1	0	0	0	7939	507	18	3	678	3	ITFG1	16	47294485	Missense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	15754577	47294485	43060268	5654	73899											
ABCC12	94160	broad.mit.edu	37	chr16	48117462	48117462	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccaagtggggtgacatGgactgagtatggcagtgggg	17	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48117462	T	T	48117462	1	4	61	0	1	0	0	0	0	0	0	0	52	1363	47	2		2	ABCC12	16	48117462	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	822977	48117462	42237291	5655	73900											
ABCC12	94160	broad.mit.edu	37	chr16	48138318	48138318	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaaacagagtcgagatgCgtgcttagtaaaccctgctg	11	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48138318	A	A	48138318	1	1	61	0	1	0	0	0	0	0	0	0	52	783	27	3		3	ABCC12	16	48138318	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20856	48138318	42216435	5656	73901											
ABCC11	85320	broad.mit.edu	37	chr16	48201679	48201679	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttcctctccaggtctccAtttctttagctgggaaatgg	8	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48201679	G	G	48201679	1	3	61	0	1	0	0	0	0	0	0	0	51	232	8	5		5	ABCC11	16	48201679	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	63361	48201679	42153074	5657	73902											
ABCC11	85320	broad.mit.edu	37	chr16	48212534	48212534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactgcagtatcctctctaCagccgtgaactgtgcctctg	9	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48212534	A	A	48212534	3	1	61	1	0	0	0	0	1	0	0	0	51	478	17	3	854	3	ABCC11	16	48212534	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10855	48212534	42142219	5658	73903											
HEATR3	55027	broad.mit.edu	37	chr16	50128684	50128684	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcccttttgcaaacaatgGcctccaagaacatttcccag	8	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50128684	C	C	50128684	3	2	61	1	0	0	0	0	1	0	0	0	7096	1203	42	4	1625	4	HEATR3	16	50128684	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1916150	50128684	40226069	5659	73904											
ADCY7	113	broad.mit.edu	37	chr16	50324504	50324504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctgctcacctgggcctGcttggtggcgctgggctatg	17	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50324504	T	T	50324504	3	4	61	1	0	0	0	0	1	0	0	0	299	1319	46	3	314	3	ADCY7	16	50324504	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	195820	50324504	40030249	5660	73905											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53670419	53670419	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcagaagctgacatgtcctCttcaactgtttaaaaaataa	6	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53670419	A	A	53670419	4	1	61	1	0	0	0	0	0	1	0	0	13661	922	32	3	745	3	RPGRIP1L	16	53670419	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3345915	53670419	36684334	5661	73906											
IRX6	79190	broad.mit.edu	37	chr16	55359060	55359060	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcccaggtaagaggcgcCtctatgggggataggggaca	16	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55359060	T	T	55359060	1	4	61	0	1	0	0	0	0	0	0	0	7918	696	24	4		4	IRX6	16	55359060	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1688641	55359060	34995693	5662	73907											
MMP2	4313	broad.mit.edu	37	chr16	55521758	55521758	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagtaaaagggacctgaagGcaccacctccctctccctcc	7	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55521758	A	A	55521758	1	1	61	0	1	0	0	0	0	0	0	0	9751	1218	42	4		4	MMP2	16	55521758	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	162698	55521758	34832995	5663	73908											
MMP2	4313	broad.mit.edu	37	chr16	55524265	55524265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccccagagccctctctccCccatcagtcagcaccatctg	6	21	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55524265	A	A	55524265	1	1	61	0	1	0	0	0	0	0	0	0	9751	638	22	2		2	MMP2	16	55524265	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2507	55524265	34830488	5664	73909											
LPCAT2	54947	broad.mit.edu	37	chr16	55590693	55590693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaattactgtgacaccaGttctgtcttttgatgattga	8	6	2	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55590693	T	T	55590693	1	4	61	0	1	0	0	0	0	0	0	0	8998	1044	36	3		3	LPCAT2	16	55590693	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66428	55590693	34764060	5665	73910											
CAPNS2	84290	broad.mit.edu	37	chr16	55601073	55601073	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtcatggacagtgacacGactggtaagctgggctttga	13	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55601073	A	A	55601073	2	1	61	1	0	0	0	0	0	0	0	1	2660	1045	37	4		4	CAPNS2	16	55601073	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10380	55601073	34753680	5666	73911											
SLC6A2	6530	broad.mit.edu	37	chr16	55725950	55725950	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcacatcgacttctaccgcTtgaaagaggccacggtcagt	10	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55725950	A	A	55725950	3	1	61	1	0	0	0	0	1	0	0	0	14797	1606	56	5	1013	5	SLC6A2	16	55725950	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	124877	55725950	34628803	5667	73912											
SLC6A2	6530	broad.mit.edu	37	chr16	55732624	55732624	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattgggaacaaatctcaatCctcggctcatctttggatga	8	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55732624	T	T	55732624	1	4	61	0	1	0	0	0	0	0	0	0	14797	870	30	4		4	SLC6A2	16	55732624	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6674	55732624	34622129	5668	73913											
CES1	1066	broad.mit.edu	37	chr16	55856682	55856682	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggctgggaaggaagcatgtCacagaggctgagtggccatc	17	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55856682	T	T	55856682	1	4	61	0	1	0	0	0	0	0	0	0	3299	841	29	4		4	CES1	16	55856682	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	124058	55856682	34498071	5669	73914											
CES1	1066	broad.mit.edu	37	chr16	55862837	55862837	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagctgacgaacttccccagCactttgccatgcacggtgtc	9	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55862837	G	G	55862837	2	3	61	1	0	0	0	0	0	0	0	1	3299	697	25	4		4	CES1	16	55862837	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6155	55862837	34491916	5670	73915											
CES1	1066	broad.mit.edu	37	chr16	55864685	55864686	+	Intron	INS	-	GAAG	GAAG													gaaagaaggaaggaaggaaaINSgaaggaaggaaggaaggaag					rs71898769		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAAG	55864686	GAAG	GAAG	55864685	6	5	61	0	1	1	1	0	0	0	0	0	3299	87	3	0		0	CES1	16	55864685	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1848	55864685	34490068	5671	73916											
CES7	221223	broad.mit.edu	37	chr16	55890240	55890240	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtgtgacctagggctatcTgttaagtgcatgtgtctctg	13	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55890240	C	C	55890240	1	2	61	0	1	0	0	0	0	0	0	0	3302	1595	55	5		5	CES7	16	55890240	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	25555	55890240	34464513	5672	73917											
CES7	221223	broad.mit.edu	37	chr16	55890296	55890296	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagctactcaccaggatgTtttgtatcagatggagggca	11	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55890296	G	G	55890296	3	3	61	1	0	0	0	0	1	0	0	0	3302	1725	60	5	629	5	CES7	16	55890296	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	56	55890296	34464457	5673	73918											
AMFR	267	broad.mit.edu	37	chr16	56417038	56417038	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcagctcccactcatttcAatctaccataatctactgtc	2	15	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56417038	T	T	56417038	1	4	61	0	1	0	0	0	0	0	0	0	571	145	5	5		5	AMFR	16	56417038	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	526742	56417038	33937715	5674	73919											
MT1G	4495	broad.mit.edu	37	chr16	56702013	56702013	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcggctgtttttatagtcagGagacggggccgggcgcagac	17	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56702013	T	T	56702013	1	4	61	0	1	0	0	0	0	0	0	0	9995	1189	41	3		3	MT1G	16	56702013	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	284975	56702013	33652740	5675	73920											
NUP93	9688	broad.mit.edu	37	chr16	56871538	56871538	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaatgctgacaaggtactgGagctgatgaacaaactgctg	12	7	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56871538	T	T	56871538	4	4	61	1	0	0	0	0	0	1	0	0	10867	1175	41	3	1984	3	NUP93	16	56871538	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	169525	56871538	33483215	5676	73921											
HERPUD1	9709	broad.mit.edu	37	chr16	56976829	56976829	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggagcagtcaaaactatgAcaacatcaacacagttgtgc	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56976829	T	T	56976829	1	4	61	0	1	0	0	0	0	0	0	0	7130	290	10	5		5	HERPUD1	16	56976829	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	105291	56976829	33377924	5677	73922											
CETP	1071	broad.mit.edu	37	chr16	57003747	57003748	+	Intron	DNP	CT	AA	AA													ggaccccagagctggccaagCtcttgactggcctgggcagc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	57003748	AA	AA	57003747	1	1	61	0	1	0	0	0	0	0	0	0	3307	812	28	3		3	CETP	16	57003747	Intron	DNP	CT	TCGA-17-Z031-01A-01W-0746-08	26918	57003747	33351006	5678	73923											
CPNE2	221184	broad.mit.edu	37	chr16	57149361	57149361	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttcccccgcttcctcactGagcgccctttctcctctctc	5	21	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57149361	T	T	57149361	1	4	61	0	1	0	0	0	0	0	0	0	3844	1305	45	3		3	CPNE2	16	57149361	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	145614	57149361	33205392	5679	73924											
CIAPIN1	57019	broad.mit.edu	37	chr16	57464047	57464047	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccccattactacctacgttCgtgtgctcacgcattcgtct	6	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57464047	G	G	57464047	1	3	61	0	1	0	0	0	0	0	0	0	3450	899	31	4		4	CIAPIN1	16	57464047	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	314686	57464047	32890706	5680	73925											
POLR2C	5432	broad.mit.edu	37	chr16	57504192	57504192	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacctgtgtttgacctcagGccaaagagtgagtactcgga	12	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57504192	C	C	57504192	3	2	61	1	0	0	0	0	1	0	0	0	12311	1217	42	4	639	4	POLR2C	16	57504192	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40145	57504192	32850561	5681	73926											
GPR114	221188	broad.mit.edu	37	chr16	57596926	57596927	+	Intron	DNP	CC	AA	AA													ggtggggaggccctgccctcCcaggctgtctacagccccct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	57596927	AA	AA	57596926	1	1	61	0	1	0	0	0	0	0	0	0	6696	638	22	2		2	GPR114	16	57596926	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	92734	57596926	32757827	5682	73927											
GPR97	222487	broad.mit.edu	37	chr16	57714563	57714563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctccccaccatgtctcccTcccgccctcaagggaggcag	8	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57714563	A	A	57714563	1	1	61	0	1	0	0	0	0	0	0	0	6786	1566	54	5		5	GPR97	16	57714563	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	117637	57714563	32640190	5683	73928											
KIFC3	3801	broad.mit.edu	37	chr16	57794777	57794777	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagccgacagcgacttgTtgatgtgctgcgcctcccgc	12	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57794777	G	G	57794777	3	3	61	1	0	0	0	0	1	0	0	0	8384	1725	60	5	433	5	KIFC3	16	57794777	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	80214	57794777	32559976	5684	73929											
CNGB1	1258	broad.mit.edu	37	chr16	57953129	57953129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcagcgggctttgtgtctgGagctggctctggggctttct	15	9	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57953129	T	T	57953129	3	4	61	1	0	0	0	0	1	0	0	0	3632	1174	41	3	1980	3	CNGB1	16	57953129	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	158352	57953129	32401624	5685	73930											
CCDC113	29070	broad.mit.edu	37	chr16	58287845	58287845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattctgatgcctatcttGggctggttcattaccaattc	7	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58287845	T	T	58287845	1	4	61	0	1	0	0	0	0	0	0	0	2776	1363	47	2		2	CCDC113	16	58287845	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	334716	58287845	32066908	5686	73931											
SLC38A7	55238	broad.mit.edu	37	chr16	58710084	58710084	+	Intron	DEL	C	-	-													gaggcccctgttccatccttCcccccaggatttcctccatt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58710084	-	-	58710084	6	5	61	0	1	1	0	1	0	0	0	0	14723	870	30	0		0	SLC38A7	16	58710084	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	422239	58710084	31644669	5687	73932											
CDH8	1006	broad.mit.edu	37	chr16	61687535	61687535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttctttgtcactttcacCaacagagtagagttcgccca	7	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61687535	A	A	61687535	3	1	61	1	0	0	0	0	1	0	0	0	3146	594	21	2	26	2	CDH8	16	61687535	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2977451	61687535	28667218	5688	73933											
CDH8	1006	broad.mit.edu	37	chr16	61687698	61687698	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatggagtcatatggcggGgccgtgggatcattatctgc	15	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61687698	T	T	61687698	2	4	61	1	0	0	0	0	0	0	0	1	3146	1219	43	2		2	CDH8	16	61687698	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	163	61687698	28667055	5689	73934											
CDH8	1006	broad.mit.edu	37	chr16	61761241	61761241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaggatgttttcaacatGgtgattatagagtctgacca	9	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61761241	T	T	61761241	1	4	61	0	1	0	0	0	0	0	0	0	3146	1363	47	2		2	CDH8	16	61761241	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	73543	61761241	28593512	5690	73935											
CDH8	1006	broad.mit.edu	37	chr16	61793359	61793359	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tagtaggaggaggaagagggGatggagaaggggaggatggg	24	0	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61793359	C	C	61793359	1	2	61	0	1	0	0	0	0	0	0	0	3146	1189	41	4		4	CDH8	16	61793359	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32118	61793359	28561394	5691	73936											
CDH8	1006	broad.mit.edu	37	chr16	61854963	61854963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatcattggccttcaccCttcctattgcagtgccaaga	7	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61854963	A	A	61854963	3	1	61	1	0	0	0	0	1	0	0	0	3146	681	24	2	1537	2	CDH8	16	61854963	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	61604	61854963	28499790	5692	73937											
CDH11	1009	broad.mit.edu	37	chr16	65006665	65006665	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtactcctagaaagataaCcgaaaacacattttaaagac	5	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65006665	G	G	65006665	1	3	61	0	1	0	0	0	0	0	0	0	3127	522	18	4		4	CDH11	16	65006665	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3151702	65006665	25348088	5693	73938											
CDH11	1009	broad.mit.edu	37	chr16	65020306	65020306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacgtgtgagttccatggGggtgatttaaatgtttcagg	15	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65020306	T	T	65020306	1	4	61	0	1	0	0	0	0	0	0	0	3127	1247	43	2		2	CDH11	16	65020306	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13641	65020306	25334447	5694	73939											
CDH11	1009	broad.mit.edu	37	chr16	65038540	65038540	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggattgagggaaggcagcCttaccctgcccacaagcacg	12	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65038540	T	T	65038540	1	4	61	0	1	0	0	0	0	0	0	0	3127	696	24	4		4	CDH11	16	65038540	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18234	65038540	25316213	5695	73940											
CDH11	1009	broad.mit.edu	37	chr16	65101831	65101831	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggaagggaaggagggaggGagggagaaatgaacggaggg	23	1	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65101831	T	T	65101831	1	4	61	0	1	0	0	0	0	0	0	0	3127	1189	41	3		3	CDH11	16	65101831	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	63291	65101831	25252922	5696	73941											
CDH11	1009	broad.mit.edu	37	chr16	65109524	65109524	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattcacaggacagccaaaGcatatttcaggagactctat	8	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65109524	A	A	65109524	1	1	61	0	1	0	0	0	0	0	0	0	3127	986	34	4		4	CDH11	16	65109524	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7693	65109524	25245229	5697	73942											
CDH5	1003	broad.mit.edu	37	chr16	66424286	66424286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaacccaaagccctttgGggtgctctgtttgcatcagc	9	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66424286	T	T	66424286	1	4	61	0	1	0	0	0	0	0	0	0	3143	1247	43	2		2	CDH5	16	66424286	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1314762	66424286	23930467	5698	73943											
CDH5	1003	broad.mit.edu	37	chr16	66424346	66424346	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaagacacccgtgtgggCacctctgtgggctctctgtt	12	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66424346	A	A	66424346	2	1	61	1	0	0	0	0	0	0	0	1	3143	697	25	3		3	CDH5	16	66424346	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60	66424346	23930407	5699	73944											
CKLF	51192	broad.mit.edu	37	chr16	66586477	66586477	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgtgcgcatgcgcgcaagAgagcgggaagccgagctggg	19	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66586477	G	G	66586477	1	3	61	0	1	0	0	0	0	0	0	0	3478	319	11	5		5	CKLF	16	66586477	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	162131	66586477	23768276	5700	73945											
CMTM1	113540	broad.mit.edu	37	chr16	66612743	66612743	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatctgacagtccctgtgtCtcacagcggtaatcgtgtgt	11	10	2	1	rs150823211		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66612743	G	G	66612743	3	3	61	1	0	0	0	0	1	0	0	0	3614	913	32	4	714	4	CMTM1	16	66612743	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	26266	66612743	23742010	5701	73946											
NAE1	8883	broad.mit.edu	37	chr16	66847648	66847648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggcgttttactttgacCcaaagttttagcagcaatgt	9	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66847648	A	A	66847648	1	1	61	0	1	0	0	0	0	0	0	0	10233	638	22	2		2	NAE1	16	66847648	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	234905	66847648	23507105	5702	73947											
PDP2	57546	broad.mit.edu	37	chr16	66918447	66918447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagataaatgaagtgcttcGagctggcgagacaacccaca	11	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66918447	A	A	66918447	3	1	61	1	0	0	0	0	1	0	0	0	11780	1058	37	4	262	4	PDP2	16	66918447	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	70799	66918447	23436306	5703	73948											
ACD	65057	broad.mit.edu	37	chr16	67692248	67692248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcggatgacatgtggcCgggtaaggccggggttcctg	16	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67692248	A	A	67692248	3	1	61	1	0	0	0	0	1	0	0	0	135	652	23	1	541	1	ACD	16	67692248	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	773801	67692248	22662505	5704	73949											
DPEP3	64180	broad.mit.edu	37	chr16	68011701	68011701	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataggacaaatctatcatcAtgcccaggcggttcaactcc	7	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68011701	C	C	68011701	3	2	61	1	0	0	0	0	1	0	0	0	4755	217	8	5	698	5	DPEP3	16	68011701	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	319453	68011701	22343052	5705	73950											
DPEP2	64174	broad.mit.edu	37	chr16	68023168	68023168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtgatggctatggtgacCgtgaaggccccactgctgta	14	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68023168	A	A	68023168	1	1	61	0	1	0	0	0	0	0	0	0	4754	667	23	1		1	DPEP2	16	68023168	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11467	68023168	22331585	5706	73951											
NFATC3	4775	broad.mit.edu	37	chr16	68156649	68156649	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgttatgctgggtccctttCaccccatcactcacctgttc	6	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68156649	T	T	68156649	3	4	61	1	0	0	0	0	1	0	0	0	10459	838	29	4	869	4	NFATC3	16	68156649	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	133481	68156649	22198104	5707	73952											
NFATC3	4775	broad.mit.edu	37	chr16	68225225	68225225	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgcaatcaatgggatatCattgttcaaatacaggacaa	7	7	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68225225	G	G	68225225	3	3	61	1	0	0	0	0	1	0	0	0	10459	826	29	4	2687	4	NFATC3	16	68225225	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	68576	68225225	22129528	5708	73953											
PRMT7	54496	broad.mit.edu	37	chr16	68349919	68349919	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcgggccaatccgaccacgGggtctgtggagtggctggag	18	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68349919	C	C	68349919	3	2	61	1	0	0	0	0	1	0	0	0	12647	1232	43	4	39	4	PRMT7	16	68349919	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	124694	68349919	22004834	5709	73954											
ZFP90	146198	broad.mit.edu	37	chr16	68597847	68597847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccttgtccaacatgagaGgactcatactggagagaaac	9	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68597847	T	T	68597847	3	4	61	1	0	0	0	0	1	0	0	0	17780	1000	35	2	1171	2	ZFP90	16	68597847	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	247928	68597847	21756906	5710	73955											
CDH3	1001	broad.mit.edu	37	chr16	68713832	68713832	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcatgttcaccattcaccgGagcacaggcaccatcagcgt	8	15	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68713832	T	T	68713832	2	4	61	1	0	0	0	0	0	0	0	1	3141	1161	41	3		3	CDH3	16	68713832	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	115985	68713832	21640921	5711	73956											
TMCO7	79613	broad.mit.edu	37	chr16	68877497	68877497	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggcgcctgagcgggtcgCgagcgtggtgttacactcca	16	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68877497	A	A	68877497	1	1	61	0	1	0	0	0	0	0	0	0	16124	783	27	3		3	TMCO7	16	68877497	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	163665	68877497	21477256	5712	73957											
NOB1	28987	broad.mit.edu	37	chr16	69790379	69790379	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttccagggtagaattctGgctggtccaaaaagggtcct	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69790379	T	T	69790379	1	4	61	0	1	0	0	0	0	0	0	0	10606	1363	47	2		2	NOB1	16	69790379	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	912882	69790379	20564374	5713	73958											
WWP2	11060	broad.mit.edu	37	chr16	69878421	69878421	+	Intron	DEL	G	-	-													attcagctattaacaagtttGgatctaaattcttgacctat					rs3842520		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69878421	-	-	69878421	6	5	61	0	1	1	0	1	0	0	0	0	17543	1363	47	0		0	WWP2	16	69878421	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	88042	69878421	20476332	5714	73959											
CLEC18C	283971	broad.mit.edu	37	chr16	70013124	70013124	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgggtctaaacattgtacAgaggttaaaaacaacactcc	7	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70013124	G	G	70013124	1	3	61	0	1	0	0	0	0	0	0	0	3536	203	7	5		5	CLEC18C	16	70013124	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	134703	70013124	20341629	5715	73960											
CLEC18C	283971	broad.mit.edu	37	chr16	70013160	70013160	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actccaatgggcgtttcccaGgagggtggggttcagtttct	14	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70013160	A	A	70013160	1	1	61	0	1	0	0	0	0	0	0	0	3536	1015	35	4		4	CLEC18C	16	70013160	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36	70013160	20341593	5716	73961											
FUK	197258	broad.mit.edu	37	chr16	70499966	70499966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactggatggctttctgcCtgcacagctgatgaggtggc	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70499966	A	A	70499966	1	1	61	0	1	0	0	0	0	0	0	0	6156	696	24	2		2	FUK	16	70499966	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	486806	70499966	19854787	5717	73962											
VAC14	55697	broad.mit.edu	37	chr16	70721913	70721913	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcttgttctggaccttcTcaaagtgctgcagcagctct	11	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70721913	C	C	70721913	3	2	61	1	0	0	0	0	1	0	0	0	17238	1551	54	5	85	5	VAC14	16	70721913	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	221947	70721913	19632840	5718	73963											
VAC14	55697	broad.mit.edu	37	chr16	70796985	70796985	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaccatagccctctcccaTggagtcatggcaccaccctg	7	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70796985	C	C	70796985	1	2	61	0	1	0	0	0	0	0	0	0	17238	1479	51	5		5	VAC14	16	70796985	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	75072	70796985	19557768	5719	73964											
HYDIN	54768	broad.mit.edu	37	chr16	70942679	70942679	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggccatgtgacgcttgTctttctgaatctcgaagact	9	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70942679	A	A	70942679	3	1	61	1	0	0	0	0	1	0	0	0	7537	1667	58	5	7431	5	HYDIN	16	70942679	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	145694	70942679	19412074	5720	73965											
HYDIN	54768	broad.mit.edu	37	chr16	71054035	71054035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttatcacaccccgccCcaccccagacagcttgccag	5	20	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71054035	A	A	71054035	1	1	61	0	1	0	0	0	0	0	0	0	7537	638	22	2		2	HYDIN	16	71054035	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	111356	71054035	19300718	5721	73966											
CALB2	794	broad.mit.edu	37	chr16	71423612	71423612	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctccttgcgtcgggaccaTcccctgaacctgctcttacc	9	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71423612	A	A	71423612	1	1	61	0	1	0	0	0	0	0	0	0	2600	1450	50	5		5	CALB2	16	71423612	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	369577	71423612	18931141	5722	73967											
TAT	6898	broad.mit.edu	37	chr16	71604270	71604270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacagggtcccaaaatgcGctgactcagcttcaccagcc	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71604270	T	T	71604270	3	4	61	1	0	0	0	0	1	0	0	0	15709	1087	38	3	437	3	TAT	16	71604270	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	180658	71604270	18750483	5723	73968											
TAT	6898	broad.mit.edu	37	chr16	71609938	71609938	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtagggtcccctttttatGggaggaaaacacaaaaggag	12	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71609938	A	A	71609938	1	1	61	0	1	0	0	0	0	0	0	0	15709	1363	47	4		4	TAT	16	71609938	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	5668	71609938	18744815	5724	73969											
HP	3240	broad.mit.edu	37	chr16	72092984	72092984	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctagacttgacttctccTttggctcacttcttgccttt	7	12	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72092984	A	A	72092984	1	1	61	0	1	0	0	0	0	0	0	0	7394	1624	56	5		5	HP	16	72092984	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	483046	72092984	18261769	5725	73970											
HPR	3250	broad.mit.edu	37	chr16	72110641	72110641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaactttaaacttactgaCcatctgaagtatgtcatgct	6	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72110641	A	A	72110641	3	1	61	1	0	0	0	0	1	0	0	0	7404	506	18	3	726	3	HPR	16	72110641	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17657	72110641	18244112	5726	73971											
CLEC18B	497190	broad.mit.edu	37	chr16	74444941	74444942	+	Intron	DNP	CC	AA	AA													cccgcctttcctctgtaaccCcaccctgggtcacacaggca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74444942	AA	AA	74444941	1	1	61	0	1	0	0	0	0	0	0	0	3535	638	22	2		2	CLEC18B	16	74444941	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	2334300	74444941	15909812	5727	73972											
WDR59	79726	broad.mit.edu	37	chr16	74943649	74943649	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacaaaaccagaaaacccaTgattttagggagaaagaaat	8	6	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74943649	A	A	74943649	1	1	61	0	1	0	0	0	0	0	0	0	17435	1479	51	5		5	WDR59	16	74943649	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	498708	74943649	15411104	5728	73973											
BCAR1	9564	broad.mit.edu	37	chr16	75263684	75263684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgacgaacttgctgtgcgCcacaaagatcttgggcggct	13	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75263684	A	A	75263684	3	1	61	1	0	0	0	0	1	0	0	0	1353	739	26	3	278	3	BCAR1	16	75263684	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	320035	75263684	15091069	5729	73974											
CHST6	4166	broad.mit.edu	37	chr16	75512678	75512678	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagctgcagcgcaccaGcgcacagttcctgcacgcgg	12	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75512678	A	A	75512678	3	1	61	1	0	0	0	0	1	0	0	0	3439	971	34	4	142	4	CHST6	16	75512678	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	248994	75512678	14842075	5730	73975											
TMEM231	79583	broad.mit.edu	37	chr16	75579318	75579318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctcaggtctccgttcaCgtataactgggatcccggga	11	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75579318	A	A	75579318	3	1	61	1	0	0	0	0	1	0	0	0	16272	536	19	3	452	3	TMEM231	16	75579318	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66640	75579318	14775435	5731	73976											
CNTNAP4	85445	broad.mit.edu	37	chr16	76382501	76382501	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttttgtggaagctaagtgAgcaaagtctatttgggcatt	12	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76382501	T	T	76382501	1	4	61	0	1	0	0	0	0	0	0	0	3681	319	11	5		5	CNTNAP4	16	76382501	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	803183	76382501	13972252	5732	73977											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555866	76555866	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacgctgtagtgtgttcctAagtatattggagactcggca	11	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76555866	T	T	76555866	1	4	61	0	1	0	0	0	0	0	0	0	3681	377	13	5		5	CNTNAP4	16	76555866	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	173365	76555866	13798887	5733	73978											
MON1B	22879	broad.mit.edu	37	chr16	77232114	77232114	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagaaagaggaggaccGgctcttcattcgttacccac	12	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77232114	C	C	77232114	3	2	61	1	0	0	0	0	1	0	0	0	9793	1116	39	4	1571	4	MON1B	16	77232114	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	676248	77232114	13122639	5734	73979											
ADAMTS18	170692	broad.mit.edu	37	chr16	77356277	77356277	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcatttttgtttggggagcAgggagttccatctttcactt	10	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77356277	T	T	77356277	3	4	61	1	0	0	0	0	1	0	0	0	263	188	7	5	1586	5	ADAMTS18	16	77356277	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	124163	77356277	12998476	5735	73980											
VAT1L	57687	broad.mit.edu	37	chr16	78005633	78005633	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacctcttagccactaaacTtgagccgcagcgccctctgg	8	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78005633	G	G	78005633	1	3	61	0	1	0	0	0	0	0	0	0	17257	1624	56	5		5	VAT1L	16	78005633	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	649356	78005633	12349120	5736	73981											
VAT1L	57687	broad.mit.edu	37	chr16	78005651	78005651	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgagccgcagcgccctcTggtggtcacttgacagtttg	12	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78005651	C	C	78005651	1	2	61	0	1	0	0	0	0	0	0	0	17257	1595	55	5		5	VAT1L	16	78005651	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18	78005651	12349102	5737	73982											
WWOX	51741	broad.mit.edu	37	chr16	78567503	78567503	+	Intron	DEL	C	-	-													ggagagatcacaaggtacaaCtagaaaatcctgggctggcc					rs2667623	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78567503	-	-	78567503	6	5	61	0	1	1	0	1	0	0	0	0	17541	580	20	0		0	WWOX	16	78567503	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	561852	78567503	11787250	5738	73983											
WWOX	51741	broad.mit.edu	37	chr16	78791223	78791230	+	Intron	DEL	ACCCCAGC	-	-													ttgttactttcttaccacctAccccagcaccccagcacccc					rs112499853		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78791230	-	-	78791223	6	5	61	0	1	1	0	1	0	0	0	0	17541	406	14	0		0	WWOX	16	78791223	Intron	DEL	ACCCCAGC	TCGA-17-Z031-01A-01W-0746-08	223720	78791223	11563530	5739	73984											
MAF	4094	broad.mit.edu	37	chr16	79628399	79628399	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtacacgatgctggggcttCcaaaatgtggcgtatcccac	11	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79628399	A	A	79628399	1	1	61	0	1	0	0	0	0	0	0	0	9243	856	30	3		3	MAF	16	79628399	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	837176	79628399	10726354	5740	73985											
CDYL2	124359	broad.mit.edu	37	chr16	80758153	80758153	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagaggaagaagatgaggaGaaagaggaagaggaggagga	19	0	0	7			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80758153	A	A	80758153	1	1	61	0	1	0	0	0	0	0	0	0	3216	957	33	4		4	CDYL2	16	80758153	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1129754	80758153	9596600	5741	73986											
PKD1L2	114780	broad.mit.edu	37	chr16	81146042	81146042	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttcagccagaactcatcTggatgcaagactggatttat	9	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81146042	C	C	81146042	1	2	61	0	1	0	0	0	0	0	0	0	12060	1595	55	5		5	PKD1L2	16	81146042	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	387889	81146042	9208711	5742	73987											
PKD1L2	114780	broad.mit.edu	37	chr16	81167419	81167419	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgggctctgcgttcctcttCcttgggagtcgtttcccaac	10	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81167419	T	T	81167419	1	4	61	0	1	0	0	0	0	0	0	0	12060	870	30	4		4	PKD1L2	16	81167419	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	21377	81167419	9187334	5743	73988											
PKD1L2	114780	broad.mit.edu	37	chr16	81171045	81171045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccgaggcacattacctgGgcccaacagatgtcctggca	10	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81171045	T	T	81171045	3	4	61	1	0	0	0	0	1	0	0	0	12060	1232	43	2	1706	2	PKD1L2	16	81171045	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3626	81171045	9183708	5744	73989											
PKD1L2	114780	broad.mit.edu	37	chr16	81204694	81204694	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgaccttggcacgggggaGaaaggcagggagaggaaatg	18	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81204694	T	T	81204694	1	4	61	0	1	0	0	0	0	0	0	0	12060	957	33	3		3	PKD1L2	16	81204694	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33649	81204694	9150059	5745	73990											
PLCG2	5336	broad.mit.edu	37	chr16	81942046	81942046	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accccctacagaactacattTtggggagaaatggttccaca	8	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81942046	A	A	81942046	3	1	61	1	0	0	0	0	1	0	0	0	12131	1841	64	5	1645	5	PLCG2	16	81942046	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	737352	81942046	8412707	5746	73991											
CDH13	1012	broad.mit.edu	37	chr16	82732878	82732878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgattacctgaggttgccCtgccaaggacagctgcttgt	12	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82732878	A	A	82732878	1	1	61	0	1	0	0	0	0	0	0	0	3129	696	24	2		2	CDH13	16	82732878	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	790832	82732878	7621875	5747	73992											
CDH13	1012	broad.mit.edu	37	chr16	82813117	82813117	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttgtgcaaaaaagagggtCtgggaatgaaccaagaggga	15	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82813117	G	G	82813117	1	3	61	0	1	0	0	0	0	0	0	0	3129	928	32	4		4	CDH13	16	82813117	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	80239	82813117	7541636	5748	73993											
CDH13	1012	broad.mit.edu	37	chr16	83151461	83151461	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgttctttggggcgagtGttgtggtgcttccagacagc	15	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83151461	T	T	83151461	1	4	61	0	1	0	0	0	0	0	0	0	3129	1392	48	3		3	CDH13	16	83151461	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	338344	83151461	7203292	5749	73994											
CDH13	1012	broad.mit.edu	37	chr16	83597571	83597571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcttgtgtcttcacagcCtgcctgtatgactgggataa	10	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83597571	A	A	83597571	1	1	61	0	1	0	0	0	0	0	0	0	3129	696	24	2		2	CDH13	16	83597571	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	446110	83597571	6757182	5750	73995											
CDH13	1012	broad.mit.edu	37	chr16	83598683	83598683	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctctccctgcatcacttcCctgccctacacctgccaggt	6	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83598683	T	T	83598683	1	4	61	0	1	0	0	0	0	0	0	0	3129	638	22	4		4	CDH13	16	83598683	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1112	83598683	6756070	5751	73996											
NECAB2	54550	broad.mit.edu	37	chr16	84035996	84035996	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccaccagccccttcttcTtgtgaaggaaatcccgtttt	7	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84035996	G	G	84035996	1	3	61	0	1	0	0	0	0	0	0	0	10400	1624	56	5		5	NECAB2	16	84035996	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	437313	84035996	6318757	5752	73997											
WFDC1	58189	broad.mit.edu	37	chr16	84360443	84360443	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccacggggggcattagagcAggaatagatacatctacccc	12	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84360443	T	T	84360443	1	4	61	0	1	0	0	0	0	0	0	0	17473	203	7	5		5	WFDC1	16	84360443	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	324447	84360443	5994310	5753	73998											
IRF8	3394	broad.mit.edu	37	chr16	85954926	85954926	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccccgtctgcgtcctgCatccatctccctgttacagt	6	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85954926	A	A	85954926	1	1	61	0	1	0	0	0	0	0	0	0	7906	725	25	3		3	IRF8	16	85954926	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1594483	85954926	4399827	5754	73999											
FOXF1	2294	broad.mit.edu	37	chr16	86546403	86546403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggagagcggggaggcgGccgtgctctggagccaggct	22	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86546403	T	T	86546403	1	4	61	0	1	0	0	0	0	0	0	0	6065	1218	42	3		3	FOXF1	16	86546403	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	591477	86546403	3808350	5755	74000											
MTHFSD	64779	broad.mit.edu	37	chr16	86575623	86575623	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgccacacagcatggttcaGaagcagatgagtctccttcc	9	13	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86575623	A	A	86575623	1	1	61	0	1	0	0	0	0	0	0	0	10027	957	33	4		4	MTHFSD	16	86575623	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29220	86575623	3779130	5756	74001											
ACSF3	197322	broad.mit.edu	37	chr16	89212441	89212441	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcactgtcccacagggagCtcaaagagtgggccaggtag	13	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89212441	T	T	89212441	3	4	61	1	0	0	0	0	1	0	0	0	176	797	28	4	1627	4	ACSF3	16	89212441	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2636818	89212441	1142312	5757	74002											
DEF8	54849	broad.mit.edu	37	chr16	90028048	90028048	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacatgttcccatgtctcccCgagggctgtggtccatggga	13	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90028048	T	T	90028048	1	4	61	0	1	0	0	0	0	0	0	0	4420	667	23	4		4	DEF8	16	90028048	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	815607	90028048	326705	5758	74003											
DEF8	54849	broad.mit.edu	37	chr16	90028216	90028216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagccactgccactggaacGacctggctgtgatccctgca	11	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90028216	T	T	90028216	3	4	61	1	0	0	0	0	1	0	0	0	4420	1058	37	3	1040	3	DEF8	16	90028216	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	168	90028216	326537	5759	74004											
DEF8	54849	broad.mit.edu	37	chr16	90028277	90028277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgagcctcgaaaggtggGggttggaaggtgggggcatc	19	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90028277	T	T	90028277	1	4	61	0	1	0	0	0	0	0	0	0	4420	1247	43	2		2	DEF8	16	90028277	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	61	90028277	326476	5760	74005											
PRDM7	11105	broad.mit.edu	37	chr16	90124313	90124313	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaatgaggaggactgacTtccggctaaagccccgctca	13	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90124313	G	G	90124313	1	3	61	0	1	0	0	0	0	0	0	0	12567	1624	56	5		5	PRDM7	16	90124313	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	96036	90124313	230440	5761	74006											
RTN4RL1	146760	broad.mit.edu	37	chr17	1840809	1840809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcgccgaggtccagctcctCcaggtgcacgaagccctcga	12	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1840809	T	T	1840809	3	4	61	1	0	0	0	0	1	0	0	0	13842	864	30	4	1022	4	RTN4RL1	17	1840809	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08		1840809	79354401	5762	74007											
OR1A1	8383	broad.mit.edu	37	chr17	3119443	3119443	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaccaggaagtggccaacTtctactgtgacattaccccc	8	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3119443	G	G	3119443	3	3	61	1	0	0	0	0	1	0	0	0	11043	1609	56	5	531	5	OR1A1	17	3119443	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1278634	3119443	78075767	5763	74008											
OR1E2	8388	broad.mit.edu	37	chr17	3336584	3336584	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatatcacagaaaaagtgGgggatcacattgtctgcaca	10	8	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3336584	T	T	3336584	2	4	61	1	0	0	0	0	0	0	0	1	11049	1219	43	2		2	OR1E2	17	3336584	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	217141	3336584	77858626	5764	74009											
SPATA22	84690	broad.mit.edu	37	chr17	3343456	3343456	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actacttaagtttcattcatCacattaatataatactgcat	2	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3343456	T	T	3343456	2	4	61	1	0	0	0	0	0	0	0	1	15124	813	29	4		4	SPATA22	17	3343456	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6872	3343456	77851754	5765	74010											
TRPV1	7442	broad.mit.edu	37	chr17	3470119	3470119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgacgtcctcacttctccCcggaagcggcaggactcttg	11	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3470119	A	A	3470119	3	1	61	1	0	0	0	0	1	0	0	0	16720	623	22	2	13	2	TRPV1	17	3470119	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	126663	3470119	77725091	5766	74011											
TRPV1	7442	broad.mit.edu	37	chr17	3483704	3483704	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcaagtgagaactgattGcggtcacctggggactggac	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3483704	A	A	3483704	1	1	61	0	1	0	0	0	0	0	0	0	16720	1334	46	4		4	TRPV1	17	3483704	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13585	3483704	77711506	5767	74012											
TRPV1	7442	broad.mit.edu	37	chr17	3483929	3483929	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatggggtggtcgaatgtgtGaaagcacagattgtgaaaag	16	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3483929	A	A	3483929	1	1	61	0	1	0	0	0	0	0	0	0	16720	1305	45	4		4	TRPV1	17	3483929	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	225	3483929	77711281	5768	74013											
SHPK	23729	broad.mit.edu	37	chr17	3526621	3526621	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaacagcctgcaaggaTgtgatactcacgtctctacg	12	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3526621	A	A	3526621	1	1	61	0	1	0	0	0	0	0	0	0	14403	1479	51	5		5	SHPK	17	3526621	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	42692	3526621	77668589	5769	74014											
GSG2	83903	broad.mit.edu	37	chr17	3627904	3627904	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcccaggaggaagcgacAggaggagccaaggacaccag	15	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3627904	T	T	3627904	2	4	61	1	0	0	0	0	0	0	0	1	6888	175	7	5		5	GSG2	17	3627904	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	101283	3627904	77567306	5770	74015											
ATP2A3	489	broad.mit.edu	37	chr17	3850917	3850917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagacagcgccacgcagcCaggagccaccgtgggccggg	16	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3850917	A	A	3850917	3	1	61	1	0	0	0	0	1	0	0	0	1142	595	21	2	2403	2	ATP2A3	17	3850917	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	223013	3850917	77344293	5771	74016											
UBE2G1	7326	broad.mit.edu	37	chr17	4205574	4205588	+	Intron	DEL	CACGGGGAAGAACAG	-	-													tttgggctcccagtggatgaCacggggaagaacagcatctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4205588	-	-	4205574	6	5	61	0	1	1	0	1	0	0	0	0	16982	493	17	0		0	UBE2G1	17	4205574	Intron	DEL	CACGGGGAAGAACAG	TCGA-17-Z031-01A-01W-0746-08	354657	4205574	76989636	5772	74017											
SPNS3	201305	broad.mit.edu	37	chr17	4352683	4352683	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcagcaaccccgacagGtgagggcatccgggggccct	15	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4352683	T	T	4352683	5	4	61	1	0	0	0	0	0	0	1	0	15194	1275	44	3	950	3	SPNS3	17	4352683	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	147109	4352683	76842527	5773	74018											
SPNS2	124976	broad.mit.edu	37	chr17	4428322	4428323	+	Intron	INS	-	C	C													ccggggcgcagggacctgggINSccccccctcaagctctcctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4428323	C	C	4428322	6	5	61	0	1	1	1	0	0	0	0	0	15193	1218	42	0		0	SPNS2	17	4428322	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	75639	4428322	76766888	5774	74019											
NLRP1	22861	broad.mit.edu	37	chr17	5462876	5462876	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttttccgatgagctcagcGagactcaccaccttggactg	9	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5462876	C	C	5462876	2	2	61	1	0	0	0	0	0	0	0	1	10566	1045	37	4		4	NLRP1	17	5462876	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1034554	5462876	75732334	5775	74020											
NLRP1	22861	broad.mit.edu	37	chr17	5485025	5485025	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacagtgccttggaccagTggagaggctccaagggtggg	17	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5485025	G	G	5485025	1	3	61	0	1	0	0	0	0	0	0	0	10566	1711	59	5		5	NLRP1	17	5485025	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	22149	5485025	75710185	5776	74021											
WSCD1	23302	broad.mit.edu	37	chr17	5993787	5993787	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtggaccggctctccgTgtaccgtgtggacgagctgc	16	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5993787	C	C	5993787	3	2	61	1	0	0	0	0	1	0	0	0	17533	1696	59	5	699	5	WSCD1	17	5993787	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	508762	5993787	75201423	5777	74022											
WSCD1	23302	broad.mit.edu	37	chr17	6014021	6014021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttcatcagttcctctaaGggagtttagtggtgaattgg	12	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6014021	T	T	6014021	1	4	61	0	1	0	0	0	0	0	0	0	17533	1015	35	2		2	WSCD1	17	6014021	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20234	6014021	75181189	5778	74023											
WSCD1	23302	broad.mit.edu	37	chr17	6023521	6023521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggttgactctaggcagtGgacagtggaaaaccctgccc	12	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6023521	T	T	6023521	1	4	61	0	1	0	0	0	0	0	0	0	17533	1363	47	2		2	WSCD1	17	6023521	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9500	6023521	75171689	5779	74024											
PITPNM3	83394	broad.mit.edu	37	chr17	6367111	6367111	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcccatgatagacacgctGgccgcgaaggacccatcaat	9	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6367111	A	A	6367111	2	1	61	1	0	0	0	0	0	0	0	1	12047	1335	47	4		4	PITPNM3	17	6367111	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	343590	6367111	74828099	5780	74025											
ALOX12	239	broad.mit.edu	37	chr17	6913862	6913862	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatttcctcccccagttaaAccccctacattagtatccca	2	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6913862	C	C	6913862	1	2	61	0	1	0	0	0	0	0	0	0	536	58	2	5		5	ALOX12	17	6913862	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	546751	6913862	74281348	5781	74026											
DLG4	1742	broad.mit.edu	37	chr17	7107081	7107081	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatggatgggtcgtcacCgatgtgtgggttgtcagtgc	16	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7107081	T	T	7107081	3	4	61	1	0	0	0	0	1	0	0	0	4597	652	23	4	1973	4	DLG4	17	7107081	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	193219	7107081	74088129	5782	74027											
NEURL4	84461	broad.mit.edu	37	chr17	7224854	7224854	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccactcccaacccctcccCtgtccctggagccagccact	5	23	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7224854	T	T	7224854	1	4	61	0	1	0	0	0	0	0	0	0	10442	696	24	4		4	NEURL4	17	7224854	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	117773	7224854	73970356	5783	74028											
C17orf74	201243	broad.mit.edu	37	chr17	7330130	7330130	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtggggcaatgtggaggctGagcagtgggcctcgtctcca	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7330130	C	C	7330130	3	2	61	1	0	0	0	0	1	0	0	0	1896	1291	45	4	830	4	C17orf74	17	7330130	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	105276	7330130	73865080	5784	74029											
TNFSF12	8742	broad.mit.edu	37	chr17	7460715	7460715	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggctgccggctcccctcgAcagctctctgggcacccggt	12	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7460715	G	G	7460715	1	3	61	0	1	0	0	0	0	0	0	0	16426	290	10	5		5	TNFSF12	17	7460715	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	130585	7460715	73734495	5785	74030											
EIF4A1	1973	broad.mit.edu	37	chr17	7476069	7476069	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgccggcaggcggggccGgggcggccaaaccaatgcga	19	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7476069	T	T	7476069	1	4	61	0	1	0	0	0	0	0	0	0	5066	1131	39	1		1	EIF4A1	17	7476069	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15354	7476069	73719141	5786	74031											
SHBG	6462	broad.mit.edu	37	chr17	7536237	7536237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccctccttaacctctgGgccaagcctcaagggcgtct	9	17	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7536237	T	T	7536237	3	4	61	1	0	0	0	0	1	0	0	0	14382	1241	43	2	1046	2	SHBG	17	7536237	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	60168	7536237	73658973	5787	74032											
TP53	7157	broad.mit.edu	37	chr17	7577156	7577156	+	Splice_Site	DEL	C	-	-													tccgtcccagtagattaccaCtactcaggataggaaaagag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7577156	-	-	7577156	8	5	61	1	0	1	0	1	0	0	1	0	16505	579	20	0	504	0	TP53	17	7577156	Splice_Site	DEL	C	TCGA-17-Z031-01A-01W-0746-08	40919	7577156	73618054	5788	74033											
TP53	7157	broad.mit.edu	37	chr17	7579375	7579375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacggaaaccgtagctgccCtggtaggttttctgggaagg	15	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579375	A	A	7579375	3	1	61	1	0	0	0	0	1	0	0	0	16505	680	24	2	990	2	TP53	17	7579375	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2219	7579375	73615835	5789	74034											
DNAH2	146754	broad.mit.edu	37	chr17	7704685	7704685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagatccacacctcgaaaGtgtagaaccaggtttttctg	10	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7704685	T	T	7704685	1	4	61	0	1	0	0	0	0	0	0	0	4642	1044	36	3		3	DNAH2	17	7704685	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	125310	7704685	73490525	5790	74035											
ALOX12B	242	broad.mit.edu	37	chr17	7979126	7979126	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccagggtgccctgacctcAgttggccccagagctgcccc	11	19	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7979126	G	G	7979126	1	3	61	0	1	0	0	0	0	0	0	0	537	203	7	5		5	ALOX12B	17	7979126	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	274441	7979126	73216084	5791	74036											
PER1	5187	broad.mit.edu	37	chr17	8045938	8045938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaatcactgccctaccCtgggagatgctggaggcggg	13	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8045938	A	A	8045938	1	1	61	0	1	0	0	0	0	0	0	0	11823	696	24	2		2	PER1	17	8045938	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66812	8045938	73149272	5792	74037											
AURKB	9212	broad.mit.edu	37	chr17	8110582	8110582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaggaccttgagcgCcacgatgaaatggcttttct	11	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8110582	A	A	8110582	3	1	61	1	0	0	0	0	1	0	0	0	1228	739	26	3	744	3	AURKB	17	8110582	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	64644	8110582	73084628	5793	74038											
ARHGEF15	22899	broad.mit.edu	37	chr17	8216578	8216578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaatccaaacaggtgcaGggcctgggggagtggacctc	16	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8216578	T	T	8216578	1	4	61	0	1	0	0	0	0	0	0	0	900	1015	35	2		2	ARHGEF15	17	8216578	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	105996	8216578	72978632	5794	74039											
RCVRN	5957	broad.mit.edu	37	chr17	9808315	9808315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggcgtaggccttgggGtcggtgtcggggaagaactt	19	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9808315	T	T	9808315	3	4	61	1	0	0	0	0	1	0	0	0	13294	1252	44	3	431	3	RCVRN	17	9808315	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1591737	9808315	71386895	5795	74040											
GAS7	8522	broad.mit.edu	37	chr17	9885213	9885213	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtggtctctggtgaaagaAgagcaaagaaaatcactttg	12	5	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9885213	C	C	9885213	1	2	61	0	1	0	0	0	0	0	0	0	6312	87	3	5		5	GAS7	17	9885213	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	76898	9885213	71309997	5796	74041											
MYH13	8735	broad.mit.edu	37	chr17	10233701	10233701	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggaggtgagggtctgtgtCacctcctctccatcatcttc	11	12	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10233701	T	T	10233701	1	4	61	0	1	0	0	0	0	0	0	0	10126	841	29	4		4	MYH13	17	10233701	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	348488	10233701	70961509	5797	74042											
MYH13	8735	broad.mit.edu	37	chr17	10263629	10263629	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttgccattaaccactggTatgatttgggcatgtctaat	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10263629	C	C	10263629	1	2	61	0	1	0	0	0	0	0	0	0	10126	1653	57	5		5	MYH13	17	10263629	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	29928	10263629	70931581	5798	74043											
MYH8	4626	broad.mit.edu	37	chr17	10298676	10298676	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcatccttttctgcgAtttttctatcaacttcagac	3	12	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10298676	T	T	10298676	3	4	61	1	0	0	0	0	1	0	0	0	10135	333	12	5	1105	5	MYH8	17	10298676	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	35047	10298676	70896534	5799	74044											
MYH8	4626	broad.mit.edu	37	chr17	10302183	10302183	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactaaagcatctttctcatCtaattgtcgagaatattcac	5	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10302183	A	A	10302183	3	1	61	1	0	0	0	0	1	0	0	0	10135	913	32	3	1978	3	MYH8	17	10302183	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3507	10302183	70893027	5800	74045											
MYH4	4622	broad.mit.edu	37	chr17	10352218	10352218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttatcgagagctatgCaggcagcattagatcgttcc	10	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10352218	A	A	10352218	3	1	61	1	0	0	0	0	1	0	0	0	10131	710	25	3	1531	3	MYH4	17	10352218	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	50035	10352218	70842992	5801	74046											
MYH1	4619	broad.mit.edu	37	chr17	10399761	10399761	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggtttctcttcatctggtCaatttcctcatctttttcag	6	10	7	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10399761	A	A	10399761	3	1	61	1	0	0	0	0	1	0	0	0	10123	826	29	3	1085	3	MYH1	17	10399761	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47543	10399761	70795449	5802	74047											
MYH1	4619	broad.mit.edu	37	chr17	10399966	10399966	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaaccttatttataaataGatttctaagtagtagtaaga	6	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10399966	T	T	10399966	1	4	61	0	1	0	0	0	0	0	0	0	10123	957	33	3		3	MYH1	17	10399966	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	205	10399966	70795244	5803	74048											
MYH1	4619	broad.mit.edu	37	chr17	10405263	10405263	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatgaatatggttcttagAatggtagcaccttttgtccc	8	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10405263	C	C	10405263	1	2	61	0	1	0	0	0	0	0	0	0	10123	261	9	5		5	MYH1	17	10405263	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5297	10405263	70789947	5804	74049											
MYH1	4619	broad.mit.edu	37	chr17	10411093	10411093	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactaccagctgaactatctCgttgagtcacatcagttcta	6	12	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10411093	T	T	10411093	1	4	61	0	1	0	0	0	0	0	0	0	10123	899	31	4		4	MYH1	17	10411093	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5830	10411093	70784117	5805	74050											
MYH2	4620	broad.mit.edu	37	chr17	10428033	10428033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgttctcagggttgcagGcaccccaatagtcctgggac	11	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10428033	T	T	10428033	1	4	61	0	1	0	0	0	0	0	0	0	10129	1218	42	3		3	MYH2	17	10428033	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16940	10428033	70767177	5806	74051											
MYH2	4620	broad.mit.edu	37	chr17	10432993	10432993	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcctcctggagagccttcTtctccttggtcagcttagca	11	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10432993	G	G	10432993	3	3	61	1	0	0	0	0	1	0	0	0	10129	1609	56	5	2888	5	MYH2	17	10432993	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4960	10432993	70762217	5807	74052											
MYH3	4621	broad.mit.edu	37	chr17	10539076	10539076	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctcttcctccagctgcctCttgagctcttctgtttgctg	7	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10539076	A	A	10539076	3	1	61	1	0	0	0	0	1	0	0	0	10130	912	32	3	1923	3	MYH3	17	10539076	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	106083	10539076	70656134	5808	74053											
DNAH9	1770	broad.mit.edu	37	chr17	11511758	11511758	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatctcctcgttctgcacAcaagcctactgtctgctctg	6	16	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11511758	T	T	11511758	1	4	61	0	1	0	0	0	0	0	0	0	4648	174	6	5		5	DNAH9	17	11511758	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	972682	11511758	69683452	5809	74054											
DNAH9	1770	broad.mit.edu	37	chr17	11550653	11550653	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggctggagtgcagtggcgcGatctcagctcactacaaccc	12	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11550653	C	C	11550653	1	2	61	0	1	0	0	0	0	0	0	0	4648	1073	37	4		4	DNAH9	17	11550653	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38895	11550653	69644557	5810	74055											
DNAH9	1770	broad.mit.edu	37	chr17	11647993	11647993	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctaagtcatcccttcccAcgtctctgtccaggcttcag	6	15	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11647993	T	T	11647993	1	4	61	0	1	0	0	0	0	0	0	0	4648	174	6	5		5	DNAH9	17	11647993	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	97340	11647993	69547217	5811	74056											
DNAH9	1770	broad.mit.edu	37	chr17	11684290	11684290	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtactggcatctgagatttGagccgccttccctcaccgac	9	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11684290	T	T	11684290	1	4	61	0	1	0	0	0	0	0	0	0	4648	1305	45	3		3	DNAH9	17	11684290	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36297	11684290	69510920	5812	74057											
DNAH9	1770	broad.mit.edu	37	chr17	11725498	11725498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaggtggtgagtgtgcgGcacccttctcagcctgagca	15	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11725498	T	T	11725498	1	4	61	0	1	0	0	0	0	0	0	0	4648	1218	42	3		3	DNAH9	17	11725498	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	41208	11725498	69469712	5813	74058											
MYOCD	93649	broad.mit.edu	37	chr17	12666919	12666919	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctggatgtcactgatctCaatttgaattcttccatgga	7	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12666919	A	A	12666919	2	1	61	1	0	0	0	0	0	0	0	1	10181	813	29	3		3	MYOCD	17	12666919	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	941421	12666919	68528291	5814	74059											
HS3ST3A1	9955	broad.mit.edu	37	chr17	13399540	13399540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccagccaaagtcgtgccCggtcatctggtagaacttga	10	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13399540	A	A	13399540	3	1	61	1	0	0	0	0	1	0	0	0	7432	652	23	1	29	1	HS3ST3A1	17	13399540	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	732621	13399540	67795670	5815	74060											
CDRT4	284040	broad.mit.edu	37	chr17	15353681	15353681	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactatgaatgaggcatctgTattcctgtcaaagaacacct	7	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15353681	C	C	15353681	1	2	61	0	1	0	0	0	0	0	0	0	3206	1653	57	5		5	CDRT4	17	15353681	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1954141	15353681	65841529	5816	74061											
TRPV2	51393	broad.mit.edu	37	chr17	16338250	16338250	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagcagacgctgcctacgCtgtgtgaggacccgtcaggg	17	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16338250	T	T	16338250	2	4	61	1	0	0	0	0	0	0	0	1	16721	796	28	4		4	TRPV2	17	16338250	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	984569	16338250	64856960	5817	74062											
MPRIP	23164	broad.mit.edu	37	chr17	17076055	17076055	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccgggaggaaatggagcgGgagctggagaagagccagcg	19	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17076055	C	C	17076055	2	2	61	1	0	0	0	0	0	0	0	1	9837	1219	43	4		4	MPRIP	17	17076055	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	737805	17076055	64119155	5818	74063											
LRRC48	83450	broad.mit.edu	37	chr17	17907825	17907825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtaaggctgggccctgGgcacaagtgccagaatctgg	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17907825	T	T	17907825	1	4	61	0	1	0	0	0	0	0	0	0	9092	1247	43	2		2	LRRC48	17	17907825	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	831770	17907825	63287385	5819	74064											
C17orf39	79018	broad.mit.edu	37	chr17	17965141	17965141	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgctatctgttactgaccCtcttcatctgtgtgcaggaa	8	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17965141	T	T	17965141	1	4	61	0	1	0	0	0	0	0	0	0	1871	696	24	4		4	C17orf39	17	17965141	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	57316	17965141	63230069	5820	74065											
TRIM16L	147166	broad.mit.edu	37	chr17	18610144	18610144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaagagttgagctctggCtgaaggcttcaccacattct	10	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18610144	A	A	18610144	1	1	61	0	1	0	0	0	0	0	0	0	16616	812	28	3		3	TRIM16L	17	18610144	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	645003	18610144	62585066	5821	74066											
TRIM16L	147166	broad.mit.edu	37	chr17	18631109	18631109	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaagcatcccacagctgCcccatgaagcaccctctctt	7	17	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18631109	T	T	18631109	1	4	61	0	1	0	0	0	0	0	0	0	16616	754	26	4		4	TRIM16L	17	18631109	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20965	18631109	62564101	5822	74067											
B9D1	27077	broad.mit.edu	37	chr17	19250477	19250477	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctcagtgggtggagcaGcttgcagatctgaggaggcg	17	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19250477	A	A	19250477	1	1	61	0	1	0	0	0	0	0	0	0	1282	986	34	4		4	B9D1	17	19250477	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	619368	19250477	61944733	5823	74068											
ULK2	9706	broad.mit.edu	37	chr17	19746608	19746608	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcacatattaattaactgGtaaaggtgacacttctaaca	6	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19746608	A	A	19746608	1	1	61	0	1	0	0	0	0	0	0	0	17102	1276	44	4		4	ULK2	17	19746608	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	496131	19746608	61448602	5824	74069											
CYTSB	92521	broad.mit.edu	37	chr17	20108291	20108291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacatggaaatgcattacGgacatcaggctcctcaagta	8	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20108291	T	T	20108291	3	4	61	1	0	0	0	0	1	0	0	0	4243	1116	39	1	983	1	CYTSB	17	20108291	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	361683	20108291	61086919	5825	74070											
USP22	23326	broad.mit.edu	37	chr17	20908310	20908310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctctctttgctgtaaCagacaacggcaggattcagc	9	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20908310	A	A	20908310	1	1	61	0	1	0	0	0	0	0	0	0	17180	493	17	3		3	USP22	17	20908310	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	800019	20908310	60286900	5826	74071											
DHRS7B	25979	broad.mit.edu	37	chr17	21075495	21075495	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgatcacaggcgccacctCagggctgggcaaaggtgggt	17	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21075495	G	G	21075495	4	3	61	1	0	0	0	0	0	1	0	0	4536	838	29	4	191	4	DHRS7B	17	21075495	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	167185	21075495	60119715	5827	74072											
MAP2K3	5606	broad.mit.edu	37	chr17	21207553	21207553	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgactctcagctggcccgGcacctcttgcagcctcagtt	9	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21207553	T	T	21207553	1	4	61	0	1	0	0	0	0	0	0	0	9330	1218	42	3		3	MAP2K3	17	21207553	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132058	21207553	59987657	5828	74073											
MAP2K3	5606	broad.mit.edu	37	chr17	21208110	21208110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccacctctgcggaggacaCtggtgggctgtgcaggtccc	15	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21208110	A	A	21208110	1	1	61	0	1	0	0	0	0	0	0	0	9330	580	20	3		3	MAP2K3	17	21208110	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	557	21208110	59987100	5829	74074											
MAP2K3	5606	broad.mit.edu	37	chr17	21210905	21210906	+	Intron	DEL	AG	-	-													aagagaagtgtctggtgggtAgagagttgacgcaggtgttg					rs35933478		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21210906	-	-	21210905	6	5	61	0	1	1	0	1	0	0	0	0	9330	435	15	0		0	MAP2K3	17	21210905	Intron	DEL	AG	TCGA-17-Z031-01A-01W-0746-08	2795	21210905	59984305	5830	74075											
KCNJ12	3768	broad.mit.edu	37	chr17	21319123	21319124	+	Frame_Shift_Ins	INS	-	T	T													tgtgacggaggagtgcccggINStggccgtcttcatggtggtg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21319124	T	T	21319123	7	5	61	1	0	1	1	0	0	0	0	0	8116	1261	44	0	471	0	KCNJ12	17	21319123	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	108218	21319123	59876087	5831	74076											
KCNJ12	3768	broad.mit.edu	37	chr17	21319339	21319339	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acattgtggaggcccatgtgCgcgcgcagctcatcaagccg	13	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21319339	G	G	21319339	3	3	61	1	0	0	0	0	1	0	0	0	8116	768	27	4	687	4	KCNJ12	17	21319339	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	216	21319339	59875871	5832	74077											
KSR1	8844	broad.mit.edu	37	chr17	25917824	25917824	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcaaacatgtgcctgtgtCcgccctctgcaggttctcca	10	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25917824	T	T	25917824	1	4	61	0	1	0	0	0	0	0	0	0	8653	870	30	4		4	KSR1	17	25917824	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4598485	25917824	55277386	5833	74078											
NOS2	4843	broad.mit.edu	37	chr17	26094792	26094792	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtggtgcgggtcccaggtCacattggaggtgtagagctt	16	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26094792	A	A	26094792	2	1	61	1	0	0	0	0	0	0	0	1	10638	813	29	3		3	NOS2	17	26094792	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	176968	26094792	55100418	5834	74079											
NOS2	4843	broad.mit.edu	37	chr17	26096665	26096665	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatgaataaaaacactgtTttttcctttcttctggaaac	6	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26096665	A	A	26096665	1	1	61	0	1	0	0	0	0	0	0	0	10638	1856	64	5		5	NOS2	17	26096665	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1873	26096665	55098545	5835	74080											
KIAA0100	9703	broad.mit.edu	37	chr17	26942571	26942571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccactcacttcatgcacCtgccccttcccaaggatatt	5	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26942571	A	A	26942571	1	1	61	0	1	0	0	0	0	0	0	0	8224	696	24	2		2	KIAA0100	17	26942571	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	845906	26942571	54252639	5836	74081											
SUPT6H	6830	broad.mit.edu	37	chr17	27024728	27024728	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaatcacaagtattatcagGactgcagcggtggggaccgc	13	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27024728	A	A	27024728	3	1	61	1	0	0	0	0	1	0	0	0	15518	1174	41	4	4418	4	SUPT6H	17	27024728	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	82157	27024728	54170482	5837	74082											
NEK8	284086	broad.mit.edu	37	chr17	27068291	27068291	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgggggcagacagtgccatGagcagtggggggtgggggtt	23	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27068291	T	T	27068291	1	4	61	0	1	0	0	0	0	0	0	0	10425	1305	45	3		3	NEK8	17	27068291	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43563	27068291	54126919	5838	74083											
MYO18A	399687	broad.mit.edu	37	chr17	27409160	27409161	+	Intron	DNP	CC	AA	AA													aaaaaataagggcgacgcagCcctggctaagaagaaacttc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	27409161	AA	AA	27409160	1	1	61	0	1	0	0	0	0	0	0	0	10159	754	26	3		3	MYO18A	17	27409160	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	340869	27409160	53786050	5839	74084											
NUFIP2	57532	broad.mit.edu	37	chr17	27613887	27613887	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagatgaagttggtgaCacagaagagttctgtatagt	13	3	1	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27613887	A	A	27613887	2	1	61	1	0	0	0	0	0	0	0	1	10844	465	17	3		3	NUFIP2	17	27613887	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	204727	27613887	53581323	5840	74085											
CORO6	84940	broad.mit.edu	37	chr17	27946258	27946258	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaatgaggagccaccctgtCcctccactccttccctacct	7	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27946258	T	T	27946258	1	4	61	0	1	0	0	0	0	0	0	0	3790	870	30	4		4	CORO6	17	27946258	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	332371	27946258	53248952	5841	74086											
SSH2	85464	broad.mit.edu	37	chr17	27958698	27958698	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctgtagtgctgctctgctCtgtgaagccctccaggtgaa	11	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27958698	A	A	27958698	4	1	61	1	0	0	0	0	0	1	0	0	15303	922	32	3	842	3	SSH2	17	27958698	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12440	27958698	53236512	5842	74087											
SLC6A4	6532	broad.mit.edu	37	chr17	28544986	28544986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttgaggtagagtttccCagctccaaattctgctactc	8	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28544986	A	A	28544986	1	1	61	0	1	0	0	0	0	0	0	0	14800	609	21	2		2	SLC6A4	17	28544986	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	586288	28544986	52650224	5843	74088											
SLC6A4	6532	broad.mit.edu	37	chr17	28548791	28548791	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtggtggtcgctgggatAgagtgccgtgtgtcatctcc	17	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28548791	G	G	28548791	2	3	61	1	0	0	0	0	0	0	0	1	14800	407	15	5		5	SLC6A4	17	28548791	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3805	28548791	52646419	5844	74089											
TBC1D29	26083	broad.mit.edu	37	chr17	28886893	28886893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgggttccccatgggctGggagttgggtttcctttcca	14	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28886893	T	T	28886893	1	4	61	0	1	0	0	0	0	0	0	0	15737	1363	47	2		2	TBC1D29	17	28886893	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	338102	28886893	52308317	5845	74090											
RAB11FIP4	84440	broad.mit.edu	37	chr17	29759037	29759037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcccagagcccaggatgGgccagaagtcggttctgcct	15	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29759037	T	T	29759037	1	4	61	0	1	0	0	0	0	0	0	0	13004	1247	43	2		2	RAB11FIP4	17	29759037	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	872144	29759037	51436173	5846	74091											
LRRC37B	114659	broad.mit.edu	37	chr17	30374810	30374810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctgtagggaatccagaagGagcgttcatgaagatgttac	12	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30374810	T	T	30374810	3	4	61	1	0	0	0	0	1	0	0	0	9081	1174	41	3	2307	3	LRRC37B	17	30374810	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	615773	30374810	50820400	5847	74092											
RHOT1	55288	broad.mit.edu	37	chr17	30527940	30527940	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccataaatattcgtttagGaacttttcacattttaaact	3	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30527940	T	T	30527940	1	4	61	0	1	0	0	0	0	0	0	0	13452	1189	41	3		3	RHOT1	17	30527940	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	153130	30527940	50667270	5848	74093											
RHBDL3	162494	broad.mit.edu	37	chr17	30643396	30643396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagttcctgcccttcacggGcttatggtcaagaaaaaaaa	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30643396	T	T	30643396	1	4	61	0	1	0	0	0	0	0	0	0	13432	1218	42	3		3	RHBDL3	17	30643396	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	115456	30643396	50551814	5849	74094											
MYO1D	4642	broad.mit.edu	37	chr17	31048086	31048086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggaaggcaaatcctgccCgacgcactctcacattttcc	9	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31048086	A	A	31048086	3	1	61	1	0	0	0	0	1	0	0	0	10165	652	23	1	1184	1	MYO1D	17	31048086	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	404690	31048086	50147124	5850	74095											
MYO1D	4642	broad.mit.edu	37	chr17	31087344	31087344	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcccgctggtattcctcTtgttcttgcttcagaaccag	7	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31087344	C	C	31087344	2	2	61	1	0	0	0	0	0	0	0	1	10165	1606	56	5		5	MYO1D	17	31087344	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	39258	31087344	50107866	5851	74096											
MYO1D	4642	broad.mit.edu	37	chr17	31099943	31099943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttcttagggaactgtcaGgcctctgagcccaagcctgc	10	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31099943	A	A	31099943	1	1	61	0	1	0	0	0	0	0	0	0	10165	1015	35	4		4	MYO1D	17	31099943	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12599	31099943	50095267	5852	74097											
MYO1D	4642	broad.mit.edu	37	chr17	31158923	31158923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacataagggcaaggcatcTtttaccatctcctaactttt	5	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31158923	C	C	31158923	1	2	61	0	1	0	0	0	0	0	0	0	10165	1624	56	5		5	MYO1D	17	31158923	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	58980	31158923	50036287	5853	74098											
SPACA3	124912	broad.mit.edu	37	chr17	31318187	31318187	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactactgtccctgcacaccCaccactgtgcctgggcacct	7	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31318187	G	G	31318187	1	3	61	0	1	0	0	0	0	0	0	0	15087	609	21	4		4	SPACA3	17	31318187	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	159264	31318187	49877023	5854	74099											
ACCN1	40	broad.mit.edu	37	chr17	31351763	31351763	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccccacccttgatatctgAtcaccctggcctgcctttgc	6	18	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31351763	T	T	31351763	1	4	61	0	1	0	0	0	0	0	0	0	128	348	12	5		5	ACCN1	17	31351763	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	33576	31351763	49843447	5855	74100											
ACCN1	40	broad.mit.edu	37	chr17	31352338	31352338	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcctagttttccagctgggGaaccagcagaggtcttctaa	10	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31352338	T	T	31352338	1	4	61	0	1	0	0	0	0	0	0	0	128	1189	41	3		3	ACCN1	17	31352338	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	575	31352338	49842872	5856	74101											
ACCN1	40	broad.mit.edu	37	chr17	31421189	31421189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcttgatggactctgttGccctctggcttgggatcagt	12	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31421189	T	T	31421189	1	4	61	0	1	0	0	0	0	0	0	0	128	1334	46	3		3	ACCN1	17	31421189	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	68851	31421189	49774021	5857	74102											
ACCN1	40	broad.mit.edu	37	chr17	31565680	31565680	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagggcctttgcgtttgCtgttccctctgcctggaatg	11	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31565680	T	T	31565680	1	4	61	0	1	0	0	0	0	0	0	0	128	812	28	4		4	ACCN1	17	31565680	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	144491	31565680	49629530	5858	74103											
ACCN1	40	broad.mit.edu	37	chr17	31585619	31585619	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgaggtggtagtagaggtGagtttgttgcctagaatgtt	15	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31585619	A	A	31585619	1	1	61	0	1	0	0	0	0	0	0	0	128	1305	45	4		4	ACCN1	17	31585619	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19939	31585619	49609591	5859	74104											
ACCN1	40	broad.mit.edu	37	chr17	31618338	31618338	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacactgcaagaggcctgggGacagccccgagggggcggaa	17	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31618338	C	C	31618338	1	2	61	0	1	0	0	0	0	0	0	0	128	1189	41	4		4	ACCN1	17	31618338	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32719	31618338	49576872	5860	74105											
ACCN1	40	broad.mit.edu	37	chr17	31618817	31618817	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagccagtagagcaagcggTtcgaggaccaggacagcagc	15	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31618817	G	G	31618817	1	3	61	0	1	0	0	0	0	0	0	0	128	1725	60	5		5	ACCN1	17	31618817	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	479	31618817	49576393	5861	74106											
ACCN1	40	broad.mit.edu	37	chr17	31652781	31652781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaggatgtggtggagtGgattgaaggaggggcagtgg	21	2	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31652781	T	T	31652781	1	4	61	0	1	0	0	0	0	0	0	0	128	1363	47	2		2	ACCN1	17	31652781	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33964	31652781	49542429	5862	74107											
ACCN1	40	broad.mit.edu	37	chr17	31705454	31705454	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggccctcccatgaatgaTgggtttgtctgcaggcccag	13	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31705454	C	C	31705454	1	2	61	0	1	0	0	0	0	0	0	0	128	1479	51	5		5	ACCN1	17	31705454	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	52673	31705454	49489756	5863	74108											
ACCN1	40	broad.mit.edu	37	chr17	31827363	31827363	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggatcacaccctgagagtCtcagtccagtttccagagac	10	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31827363	A	A	31827363	1	1	61	0	1	0	0	0	0	0	0	0	128	928	32	3		3	ACCN1	17	31827363	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	121909	31827363	49367847	5864	74109											
ACCN1	40	broad.mit.edu	37	chr17	31881791	31881791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatctatgcctgaggctgGccggggactgagctggggga	19	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31881791	T	T	31881791	1	4	61	0	1	0	0	0	0	0	0	0	128	1218	42	3		3	ACCN1	17	31881791	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54428	31881791	49313419	5865	74110											
ACCN1	40	broad.mit.edu	37	chr17	32102602	32102602	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctacagcagggtcccatAgtgtgcatctgtgtgtggtg	13	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32102602	G	G	32102602	1	3	61	0	1	0	0	0	0	0	0	0	128	435	15	5		5	ACCN1	17	32102602	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	220811	32102602	49092608	5866	74111											
ACCN1	40	broad.mit.edu	37	chr17	32102721	32102721	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagtgtccctggcagaggGaactgagtctgtatgatgct	14	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32102721	T	T	32102721	1	4	61	0	1	0	0	0	0	0	0	0	128	1189	41	3		3	ACCN1	17	32102721	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	119	32102721	49092489	5867	74112											
CCL13	6357	broad.mit.edu	37	chr17	32683575	32683575	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagtgcttctgtgcctGctgctcatgacagcagcttt	10	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32683575	T	T	32683575	2	4	61	1	0	0	0	0	0	0	0	1	2912	1306	46	3		3	CCL13	17	32683575	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	580854	32683575	48511635	5868	74113											
CCT6B	10693	broad.mit.edu	37	chr17	33281507	33281507	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatgatgttctagctacatCtaagaggatttttcttttca	6	6	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33281507	A	A	33281507	3	1	61	1	0	0	0	0	1	0	0	0	2988	913	32	3	1188	3	CCT6B	17	33281507	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	597932	33281507	47913703	5869	74114											
RAD51L3	5892	broad.mit.edu	37	chr17	33442259	33442259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgaactgccttttagcCattctttcagtcatccattc	4	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33442259	A	A	33442259	1	1	61	0	1	0	0	0	0	0	0	0	13098	609	21	2		2	RAD51L3	17	33442259	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	160752	33442259	47752951	5870	74115											
NLE1	54475	broad.mit.edu	37	chr17	33463022	33463022	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacgaaataaaatgatctcTagcacattagtattttagga	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33463022	C	C	33463022	1	2	61	0	1	0	0	0	0	0	0	0	10555	1537	53	5		5	NLE1	17	33463022	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	20763	33463022	47732188	5871	74116											
UNC45B	146862	broad.mit.edu	37	chr17	33475970	33475970	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacattaaccgagtctcCttctccttcccctttcctca	3	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33475970	T	T	33475970	1	4	61	0	1	0	0	0	0	0	0	0	17115	696	24	4		4	UNC45B	17	33475970	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12948	33475970	47719240	5872	74117											
UNC45B	146862	broad.mit.edu	37	chr17	33501191	33501191	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaattcagaaatgcaccaTctttggttccaataccgatt	6	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33501191	C	C	33501191	1	2	61	0	1	0	0	0	0	0	0	0	17115	1450	50	5		5	UNC45B	17	33501191	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	25221	33501191	47694019	5873	74118											
SLFN12L	342615	broad.mit.edu	37	chr17	33849224	33849224	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaccacttaattttcaagGgacaaggtgacttagcagag	9	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33849224	A	A	33849224	1	1	61	0	1	0	0	0	0	0	0	0	14849	1247	43	4		4	SLFN12L	17	33849224	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	348033	33849224	47345986	5874	74119											
AP2B1	163	broad.mit.edu	37	chr17	33977324	33977324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttttgccacgttgcccaGgctgatctcaaactcttggg	11	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33977324	T	T	33977324	1	4	61	0	1	0	0	0	0	0	0	0	743	1015	35	2		2	AP2B1	17	33977324	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	128100	33977324	47217886	5875	74120											
AP2B1	163	broad.mit.edu	37	chr17	33997831	33997831	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcatctagtatttagctaAatgaactctacctctctctc	6	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33997831	G	G	33997831	1	3	61	0	1	0	0	0	0	0	0	0	743	29	1	5		5	AP2B1	17	33997831	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	20507	33997831	47197379	5876	74121											
GAS2L2	246176	broad.mit.edu	37	chr17	34072633	34072633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccactgcgagggatgaccCcagaccttgtgccctgcgga	12	16	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34072633	A	A	34072633	3	1	61	1	0	0	0	0	1	0	0	0	6309	623	22	2	763	2	GAS2L2	17	34072633	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	74802	34072633	47122577	5877	74122											
C17orf66	256957	broad.mit.edu	37	chr17	34185940	34185940	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaggcactgcaacaagaaCtcttggaccatgttgctgca	9	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34185940	G	G	34185940	3	3	61	1	0	0	0	0	1	0	0	0	1890	564	20	4	849	4	C17orf66	17	34185940	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	113307	34185940	47009270	5878	74123											
C17orf66	256957	broad.mit.edu	37	chr17	34191159	34191159	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggatctgacccgccatcctAgcaccccggggagcctcgtc	11	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34191159	T	T	34191159	1	4	61	0	1	0	0	0	0	0	0	0	1890	435	15	5		5	C17orf66	17	34191159	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5219	34191159	47004051	5879	74124											
CCL5	6352	broad.mit.edu	37	chr17	34207333	34207333	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgtgggagaggctgtgcGaggtccacgtgctgtcttga	16	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34207333	A	A	34207333	1	1	61	0	1	0	0	0	0	0	0	0	2935	1073	37	4		4	CCL5	17	34207333	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16174	34207333	46987877	5880	74125											
CCL23	6368	broad.mit.edu	37	chr17	34344969	34344969	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcagggctggccgaggactCctgggctcactgcttcctgg	16	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34344969	T	T	34344969	1	4	61	0	1	0	0	0	0	0	0	0	2923	870	30	4		4	CCL23	17	34344969	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	137636	34344969	46850241	5881	74126											
CCL3	6348	broad.mit.edu	37	chr17	34416174	34416174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatcctgggcccaccatgGccccaccattctgctctctg	9	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34416174	T	T	34416174	1	4	61	0	1	0	0	0	0	0	0	0	2929	1218	42	3		3	CCL3	17	34416174	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	71205	34416174	46779036	5882	74127											
TBC1D3C	414060	broad.mit.edu	37	chr17	34644933	34644933	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccggcctattttcctactCcttgcagtgcccacctcccc	5	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34644933	A	A	34644933	1	1	61	0	1	0	0	0	0	0	0	0	15741	870	30	3		3	TBC1D3C	17	34644933	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	228759	34644933	46550277	5883	74128											
SYNRG	11276	broad.mit.edu	37	chr17	35898474	35898474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaattacttctgtgcaaaCagaactactactgattccat	5	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35898474	A	A	35898474	3	1	61	1	0	0	0	0	1	0	0	0	15579	478	17	3	568	3	SYNRG	17	35898474	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1253541	35898474	45296736	5884	74129											
TBC1D3	729873	broad.mit.edu	37	chr17	36351998	36351998	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattcctttcttaaagtccTgagaaaacacaatttttaaa	3	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36351998	C	C	36351998	5	2	61	1	0	0	0	0	0	0	1	0	15739	1595	55	5		5	TBC1D3	17	36351998	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	453524	36351998	44843212	5885	74130											
FBXL20	84961	broad.mit.edu	37	chr17	37424976	37424976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctgcaatgctgtcaggCactacagtatcctacactag	8	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37424976	A	A	37424976	1	1	61	0	1	0	0	0	0	0	0	0	5774	725	25	3		3	FBXL20	17	37424976	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1072978	37424976	43770234	5886	74131											
MED1	5469	broad.mit.edu	37	chr17	37607108	37607109	+	Intron	DNP	CC	AA	AA													aagttgagagtccccatcgcCctaaagtcgaagctctataa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	37607109	AA	AA	37607108	1	1	61	0	1	0	0	0	0	0	0	0	9518	638	22	2		2	MED1	17	37607108	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	182132	37607108	43588102	5887	74132											
IKZF3	22806	broad.mit.edu	37	chr17	37988523	37988523	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagcagaattcctctttcaGagcaagattactctttctct	5	11	4	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37988523	A	A	37988523	1	1	61	0	1	0	0	0	0	0	0	0	7686	957	33	4		4	IKZF3	17	37988523	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	381415	37988523	43206687	5888	74133											
GSDMA	284110	broad.mit.edu	37	chr17	38126822	38126822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaggtggtggagacggtGcaggaggtcacactggagcg	20	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38126822	T	T	38126822	2	4	61	1	0	0	0	0	0	0	0	1	6882	1306	46	3		3	GSDMA	17	38126822	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	138299	38126822	43068388	5889	74134											
GSDMA	284110	broad.mit.edu	37	chr17	38127456	38127456	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagccagggcttggatGgaagctctagggtgatgtac	17	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38127456	A	A	38127456	1	1	61	0	1	0	0	0	0	0	0	0	6882	1363	47	4		4	GSDMA	17	38127456	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	634	38127456	43067754	5890	74135											
PSMD3	5709	broad.mit.edu	37	chr17	38146289	38146289	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catttggcaccctggcttgtCggtggggagttggatgaccc	15	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38146289	A	A	38146289	1	1	61	0	1	0	0	0	0	0	0	0	12805	899	31	3		3	PSMD3	17	38146289	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18833	38146289	43048921	5891	74136											
THRA	7067	broad.mit.edu	37	chr17	38240706	38240706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggattaatcatgatccggGttgtgctgcccaactgctag	13	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38240706	T	T	38240706	1	4	61	0	1	0	0	0	0	0	0	0	15996	1276	44	3		3	THRA	17	38240706	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	94417	38240706	42954504	5892	74137											
CCR7	1236	broad.mit.edu	37	chr17	38721638	38721638	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgttccttctcacatgaAgaggctcactcacccaggtc	7	14	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38721638	C	C	38721638	1	2	61	0	1	0	0	0	0	0	0	0	2976	87	3	5		5	CCR7	17	38721638	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	480932	38721638	42473572	5893	74138											
KRT222	125113	broad.mit.edu	37	chr17	38821221	38821221	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagacatggactgtctccttAttctggaaggtgcctgtctg	11	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38821221	G	G	38821221	1	3	61	0	1	0	0	0	0	0	0	0	8530	464	16	5		5	KRT222	17	38821221	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	99583	38821221	42373989	5894	74139											
KRT39	390792	broad.mit.edu	37	chr17	39116593	39116593	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcacattccagccgggacTtgacgtccagcaggatctcg	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39116593	G	G	39116593	3	3	61	1	0	0	0	0	1	0	0	0	8547	1609	56	5	326	5	KRT39	17	39116593	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	295372	39116593	42078617	5895	74140											
KRT39	390792	broad.mit.edu	37	chr17	39118342	39118342	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagacacagtttgggaaAtactgcagcacacaggtgta	11	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39118342	C	C	39118342	1	2	61	0	1	0	0	0	0	0	0	0	8547	116	4	5		5	KRT39	17	39118342	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1749	39118342	42076868	5896	74141											
KRT40	125115	broad.mit.edu	37	chr17	39135359	39135359	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaattcctgcttacccTtttctagctatgtgaccact	4	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39135359	G	G	39135359	1	3	61	0	1	0	0	0	0	0	0	0	8549	1624	56	5		5	KRT40	17	39135359	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17017	39135359	42059851	5897	74142											
KRTAP3-1	83896	broad.mit.edu	37	chr17	39165437	39165437	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctgggcgtcagcctattActgagggtttttcccccatg	10	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39165437	G	G	39165437	1	3	61	0	1	0	0	0	0	0	0	0	8617	406	14	5		5	KRTAP3-1	17	39165437	5'Flank	SNP	A	TCGA-17-Z031-01A-01W-0746-08	30078	39165437	42029773	5898	74143											
KRTAP1-5	83895	broad.mit.edu	37	chr17	39183048	39183048	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctccacacgactgtctggGcggcaccacctgatacgggt	11	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39183048	T	T	39183048	2	4	61	1	0	0	0	0	0	0	0	1	8575	1190	42	3		3	KRTAP1-5	17	39183048	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17611	39183048	42012162	5899	74144											
KRTAP4-3	85290	broad.mit.edu	37	chr17	39324162	39324162	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagctgggtttgcagcagCtggagatacagcaggaaggc	16	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39324162	G	G	39324162	3	3	61	1	0	0	0	0	1	0	0	0	8624	797	28	4	328	4	KRTAP4-3	17	39324162	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	141114	39324162	41871048	5900	74145											
KRTAP4-3	85290	broad.mit.edu	37	chr17	39324252	39324252	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagctgggtttgcagcagCtggagatacagcaggaaggc	16	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39324252	G	G	39324252	3	3	61	1	0	0	0	0	1	0	0	0	8624	797	28	4	418	4	KRTAP4-3	17	39324252	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	90	39324252	41870958	5901	74146											
KRTAP4-2	85291	broad.mit.edu	37	chr17	39334236	39334236	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcagcagctggggctgcAgcaggtgggctggcagcaca	18	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39334236	G	G	39334236	3	3	61	1	0	0	0	0	1	0	0	0	8623	188	7	5	233	5	KRTAP4-2	17	39334236	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	9984	39334236	41860974	5902	74147											
KRTAP4-2	85291	broad.mit.edu	37	chr17	39334404	39334404	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcacacagagccacaacAggagttgaccatggtgtcag	12	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39334404	T	T	39334404	3	4	61	1	0	0	0	0	1	0	0	0	8623	188	7	5	401	5	KRTAP4-2	17	39334404	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	168	39334404	41860806	5903	74148											
KRTAP9-2	83899	broad.mit.edu	37	chr17	39383132	39383132	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgtgtgaccagctgcTgccagccttcctgctgcagc	10	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39383132	A	A	39383132	3	1	61	1	0	0	0	0	1	0	0	0	8645	1580	55	5	228	5	KRTAP9-2	17	39383132	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	48728	39383132	41812078	5904	74149											
KRT38	8687	broad.mit.edu	37	chr17	39595188	39595188	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacagcaccaggaccccgcCcctggcaagcagtaggaggg	14	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39595188	T	T	39595188	1	4	61	0	1	0	0	0	0	0	0	0	8546	638	22	4		4	KRT38	17	39595188	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	212056	39595188	41600022	5905	74150											
KRT38	8687	broad.mit.edu	37	chr17	39597007	39597007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggagtggaccccacaCggactcggttggcatgtgcc	15	13	0	0	rs113218990		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39597007	A	A	39597007	3	1	61	1	0	0	0	0	1	0	0	0	8546	536	19	3	1231	3	KRT38	17	39597007	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1819	39597007	41598203	5906	74151											
KRT32	3882	broad.mit.edu	37	chr17	39619273	39619273	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagctgtagcgggcctcactCtccgtcagcgtgttttccag	12	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39619273	G	G	39619273	3	3	61	1	0	0	0	0	1	0	0	0	8539	912	32	4	328	4	KRT32	17	39619273	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22266	39619273	41575937	5907	74152											
KRT9	3857	broad.mit.edu	37	chr17	39725917	39725917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattctccctctggtccccCcagggtacaaaaaggggaca	10	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39725917	A	A	39725917	1	1	61	0	1	0	0	0	0	0	0	0	8572	638	22	2		2	KRT9	17	39725917	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	106644	39725917	41469293	5908	74153											
KRT9	3857	broad.mit.edu	37	chr17	39728292	39728292	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagtgataggagtgctaCcggctcccaagtgcagggta	14	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39728292	A	A	39728292	1	1	61	0	1	0	0	0	0	0	0	0	8572	522	18	3		3	KRT9	17	39728292	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2375	39728292	41466918	5909	74154											
JUP	3728	broad.mit.edu	37	chr17	39778020	39778020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctcctatggaaaaaggGgatgtggatgtgcgcatctg	13	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39778020	T	T	39778020	1	4	61	0	1	0	0	0	0	0	0	0	8042	1247	43	2		2	JUP	17	39778020	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49728	39778020	41417190	5910	74155											
JUP	3728	broad.mit.edu	37	chr17	39778486	39778486	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgcagacagggaagccctCtaaggtgactaatcccggtg	12	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39778486	A	A	39778486	1	1	61	0	1	0	0	0	0	0	0	0	8042	928	32	3		3	JUP	17	39778486	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	466	39778486	41416724	5911	74156											
JUP	3728	broad.mit.edu	37	chr17	39803932	39803932	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggggccaccagggaagcTgcaggggctagaacccaggg	17	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39803932	G	G	39803932	1	3	61	0	1	0	0	0	0	0	0	0	8042	1595	55	5		5	JUP	17	39803932	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	25446	39803932	41391278	5912	74157											
HAP1	9001	broad.mit.edu	37	chr17	39883692	39883692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtcctgcagctgggaaCccacccacacgctctgctgg	12	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39883692	A	A	39883692	3	1	61	1	0	0	0	0	1	0	0	0	7019	522	18	3		3	HAP1	17	39883692	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79760	39883692	41311518	5913	74158											
SC65	10609	broad.mit.edu	37	chr17	39965809	39965809	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactcccagggtgccttccCcatattcccaccacccctag	6	19	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39965809	A	A	39965809	1	1	61	0	1	0	0	0	0	0	0	0	13979	638	22	2		2	SC65	17	39965809	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	82117	39965809	41229401	5914	74159											
DNAJC7	7266	broad.mit.edu	37	chr17	40152439	40152439	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccaccaggacttggcagCtacttttaataatatttggc	9	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40152439	G	G	40152439	1	3	61	0	1	0	0	0	0	0	0	0	4694	812	28	4		4	DNAJC7	17	40152439	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	186630	40152439	41042771	5915	74160											
RAB5C	5878	broad.mit.edu	37	chr17	40280746	40280746	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctgtgataccgctccTgtccagctgtgtcccagatc	10	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40280746	A	A	40280746	3	1	61	1	0	0	0	0	1	0	0	0	13058	1580	55	5	427	5	RAB5C	17	40280746	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	128307	40280746	40914464	5916	74161											
STAT5B	6777	broad.mit.edu	37	chr17	40369475	40369475	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgttcaagatctcgccacTgtaatcactgcaaatcagag	8	10	4	2	rs67333182		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40369475	A	A	40369475	3	1	61	1	0	0	0	0	1	0	0	0	15387	1580	55	5	1226	5	STAT5B	17	40369475	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	88729	40369475	40825735	5917	74162											
ATP6V0A1	535	broad.mit.edu	37	chr17	40673156	40673156	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtccctgtgagggccgtGtgccccatgctaccctcccc	11	17	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40673156	T	T	40673156	1	4	61	0	1	0	0	0	0	0	0	0	1172	1392	48	3		3	ATP6V0A1	17	40673156	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	303681	40673156	40522054	5918	74163											
NAGLU	4669	broad.mit.edu	37	chr17	40685979	40685979	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagtgttaaattccaaacAgctgctttacttaagatgcg	10	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40685979	G	G	40685979	1	3	61	0	1	0	0	0	0	0	0	0	10237	203	7	5		5	NAGLU	17	40685979	5'Flank	SNP	A	TCGA-17-Z031-01A-01W-0746-08	12823	40685979	40509231	5919	74164											
WNK4	65266	broad.mit.edu	37	chr17	40933114	40933114	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcccggactctgcagtggGcccggggtccagggagccgc	17	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40933114	A	A	40933114	3	1	61	1	0	0	0	0	1	0	0	0	17507	1203	42	4	400	4	WNK4	17	40933114	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	247135	40933114	40262096	5920	74165											
WNK4	65266	broad.mit.edu	37	chr17	40937188	40937188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgaaggctgcatccgcaCggataagaacgagaggtggg	15	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40937188	A	A	40937188	3	1	61	1	0	0	0	0	1	0	0	0	17507	536	19	3	1262	3	WNK4	17	40937188	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4074	40937188	40258022	5921	74166											
WNK4	65266	broad.mit.edu	37	chr17	40939379	40939379	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgctgccatccagcgaaaGcgtgagaagctgcgtaaagc	13	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40939379	A	A	40939379	2	1	61	1	0	0	0	0	0	0	0	1	17507	962	34	4		4	WNK4	17	40939379	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2191	40939379	40255831	5922	74167											
CNTD1	124817	broad.mit.edu	37	chr17	40956051	40956051	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttagagatgggctTttgccatgttgcccagggtg	12	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40956051	A	A	40956051	1	1	61	0	1	0	0	0	0	0	0	0	3667	1856	64	5		5	CNTD1	17	40956051	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16672	40956051	40239159	5923	74168											
AARSD1	80755	broad.mit.edu	37	chr17	41107743	41107743	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggattacagatgtgggCcaccacgcctggccgcactt	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41107743	A	A	41107743	1	1	61	0	1	0	0	0	0	0	0	0	21	754	26	3		3	AARSD1	17	41107743	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	151692	41107743	40087467	5924	74169											
ETV4	2118	broad.mit.edu	37	chr17	41606388	41606388	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatttcttgtctctctgactGattcattatctgatcctaca	4	10	5	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41606388	T	T	41606388	1	4	61	0	1	0	0	0	0	0	0	0	5323	1305	45	3		3	ETV4	17	41606388	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	498645	41606388	39588822	5925	74170											
MPP3	4356	broad.mit.edu	37	chr17	41888031	41888031	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacaaggctttcatttgattCtcaaaggaagacccaaagaa	7	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41888031	A	A	41888031	1	1	61	0	1	0	0	0	0	0	0	0	9829	928	32	3		3	MPP3	17	41888031	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	281643	41888031	39307179	5926	74171											
HDAC5	10014	broad.mit.edu	37	chr17	42194944	42194944	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgggagggggtggagctgCggtgatgtcaagagagacag	21	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42194944	T	T	42194944	1	4	61	0	1	0	0	0	0	0	0	0	7077	783	27	4		4	HDAC5	17	42194944	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	306913	42194944	39000266	5927	74172											
SLC25A39	51629	broad.mit.edu	37	chr17	42398532	42398533	+	Missense_Mutation	DNP	CG	AT	AT													caggcacccagctcccggtaCgacacatgctgagcctgcag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	42398533	AT	AT	42398532	3	1	61	1	0	0	0	0	1	0	0	0	14617	523	19	3	514	3	SLC25A39	17	42398532	Missense_Mutation	DNP	CG	TCGA-17-Z031-01A-01W-0746-08	203588	42398532	38796678	5928	74173											
SLC25A39	51629	broad.mit.edu	37	chr17	42398992	42398992	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttttaaagcatcacctgCcccacctagccattcaacag	4	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42398992	T	T	42398992	1	4	61	0	1	0	0	0	0	0	0	0	14617	754	26	4		4	SLC25A39	17	42398992	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	460	42398992	38796218	5929	74174											
GRN	2896	broad.mit.edu	37	chr17	42429341	42429341	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctcggcactgcgccccaCatagtggctacctacaacgc	11	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42429341	T	T	42429341	1	4	61	0	1	0	0	0	0	0	0	0	6870	493	17	4		4	GRN	17	42429341	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30349	42429341	38765869	5930	74175											
ITGA2B	3674	broad.mit.edu	37	chr17	42458450	42458450	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggaaggagtaacagaaagGaagtggctgattgttattca	13	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42458450	A	A	42458450	1	1	61	0	1	0	0	0	0	0	0	0	7946	1189	41	4		4	ITGA2B	17	42458450	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29109	42458450	38736760	5931	74176											
GPATCH8	23131	broad.mit.edu	37	chr17	42512405	42512405	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagtgagcacctccccatCtcccaatgaatagctttgtt	6	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42512405	G	G	42512405	1	3	61	0	1	0	0	0	0	0	0	0	6659	928	32	4		4	GPATCH8	17	42512405	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53955	42512405	38682805	5932	74177											
GJC1	10052	broad.mit.edu	37	chr17	42883060	42883060	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctcatcgtaatagatGgattctcctcctacagctgt	7	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42883060	A	A	42883060	2	1	61	1	0	0	0	0	0	0	0	1	6478	1335	47	4		4	GJC1	17	42883060	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	370655	42883060	38312150	5933	74178											
ACBD4	79777	broad.mit.edu	37	chr17	43214816	43214816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggaaccggcacccccaaGcccaggttagtgcttgagca	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43214816	T	T	43214816	3	4	61	1	0	0	0	0	1	0	0	0	124	971	34	3	515	3	ACBD4	17	43214816	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	331756	43214816	37980394	5934	74179											
HEXIM2	124790	broad.mit.edu	37	chr17	43246830	43246830	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacccaggttccagtggggAgagtgaggccggggacagtg	18	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43246830	G	G	43246830	3	3	61	1	0	0	0	0	1	0	0	0	7144	304	11	5	521	5	HEXIM2	17	43246830	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	32014	43246830	37948380	5935	74180											
MAP3K14	9020	broad.mit.edu	37	chr17	43350986	43350986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgtcagctgccaggccgCcccggggaggaagaggaaca	16	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43350986	A	A	43350986	1	1	61	0	1	0	0	0	0	0	0	0	9340	754	26	3		3	MAP3K14	17	43350986	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104156	43350986	37844224	5936	74181											
PLEKHM1	9842	broad.mit.edu	37	chr17	43551825	43551825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacacatctgtctgtcccCacctgtccaccacctcctgc	4	21	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43551825	A	A	43551825	1	1	61	0	1	0	0	0	0	0	0	0	12175	609	21	2		2	PLEKHM1	17	43551825	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	200839	43551825	37643385	5937	74182											
CRHR1	1394	broad.mit.edu	37	chr17	43907345	43907345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacttggccagtcagccCcaccctgtgcctcagtttcc	9	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43907345	A	A	43907345	1	1	61	0	1	0	0	0	0	0	0	0	3903	638	22	2		2	CRHR1	17	43907345	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	355520	43907345	37287865	5938	74183											
MAPT	4137	broad.mit.edu	37	chr17	44039746	44039746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaagtgatggaagatcacGctgggacgtacgggttgggg	18	6	1	2	rs143210139		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44039746	T	T	44039746	3	4	61	1	0	0	0	0	1	0	0	0	9389	1087	38	3	45	3	MAPT	17	44039746	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	132401	44039746	37155464	5939	74184											
MAPT	4137	broad.mit.edu	37	chr17	44073970	44073970	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcccatgccagacctgaaGaatgtcaagtccaagatcgg	11	11	1	4	rs141636979		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44073970	T	T	44073970	3	4	61	1	0	0	0	0	1	0	0	0	9389	933	33	3	1805	3	MAPT	17	44073970	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34224	44073970	37121240	5940	74185											
STH	246744	broad.mit.edu	37	chr17	44076767	44076767	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgtgagtggatgattcAggttgccagagacagaaccc	13	8	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44076767	T	T	44076767	3	4	61	1	0	0	0	0	1	0	0	0	15399	188	7	5	124	5	STH	17	44076767	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2797	44076767	37118443	5941	74186											
STH	246744	broad.mit.edu	37	chr17	44077011	44077011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgaggggtgagagtcaGgcgacctcatgccaagtgta	14	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44077011	T	T	44077011	3	4	61	1	0	0	0	0	1	0	0	0	15399	991	35	2	368	2	STH	17	44077011	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	244	44077011	37118199	5942	74187											
KIAA1267	284058	broad.mit.edu	37	chr17	44213857	44213857	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgctaaggagtaaaatgatCcagaaaaagtagaaatttgg	10	3	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44213857	A	A	44213857	1	1	61	0	1	0	0	0	0	0	0	0	8289	870	30	3		3	KIAA1267	17	44213857	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	136846	44213857	36981353	5943	74188											
WNT9B	7484	broad.mit.edu	37	chr17	44949909	44949909	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcgggaagtcctgacgcCcttcccaggattgggcactg	15	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44949909	T	T	44949909	3	4	61	1	0	0	0	0	1	0	0	0	17526	623	22	4	110	4	WNT9B	17	44949909	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	736052	44949909	36245301	5944	74189											
ITGB3	3690	broad.mit.edu	37	chr17	45361784	45361784	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgggagaagaagataaAaactaacatctttctgcctt	9	6	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45361784	G	G	45361784	1	3	61	0	1	0	0	0	0	0	0	0	7965	29	1	5		5	ITGB3	17	45361784	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	411875	45361784	35833426	5945	74190											
ITGB3	3690	broad.mit.edu	37	chr17	45368617	45368617	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaagttagatgtaatggatCcaccaatcttttcctctgag	7	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45368617	A	A	45368617	1	1	61	0	1	0	0	0	0	0	0	0	7965	870	30	3		3	ITGB3	17	45368617	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6833	45368617	35826593	5946	74191											
ITGB3	3690	broad.mit.edu	37	chr17	45380390	45380390	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggaaggccatggtgggtgGatcgtctggggtcaggagtt	19	5	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45380390	T	T	45380390	1	4	61	0	1	0	0	0	0	0	0	0	7965	1189	41	3		3	ITGB3	17	45380390	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11773	45380390	35814820	5947	74192											
NPEPPS	9520	broad.mit.edu	37	chr17	45668161	45668161	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtagaccactgcttcccaGagtatgatatttggactcag	10	9	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45668161	T	T	45668161	4	4	61	1	0	0	0	0	0	1	0	0	10670	943	33	3	1212	3	NPEPPS	17	45668161	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	287771	45668161	35527049	5948	74193											
KPNB1	3837	broad.mit.edu	37	chr17	45752019	45752019	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagaatgttcttcggaaaGtgcaacatcaagatgctttg	9	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45752019	C	C	45752019	3	2	61	1	0	0	0	0	1	0	0	0	8506	1029	36	4	1841	4	KPNB1	17	45752019	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	83858	45752019	35443191	5949	74194											
HOXB1	3211	broad.mit.edu	37	chr17	46607311	46607311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcttccctcctcccgggGctggctctggacctccattt	9	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46607311	T	T	46607311	1	4	61	0	1	0	0	0	0	0	0	0	7366	1218	42	3		3	HOXB1	17	46607311	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	855292	46607311	34587899	5950	74195											
HOXB3	3213	broad.mit.edu	37	chr17	46654478	46654478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcgtttccctccctccCtctcccgccacctcttcttc	3	23	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46654478	A	A	46654478	1	1	61	0	1	0	0	0	0	0	0	0	7369	696	24	2		2	HOXB3	17	46654478	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47167	46654478	34540732	5951	74196											
HOXB13	10481	broad.mit.edu	37	chr17	46804345	46804345	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgccccttgctgtacggaAtgcgtttcttgcggccgcga	12	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46804345	T	T	46804345	3	4	61	1	0	0	0	0	1	0	0	0	7367	101	4	5	196	5	HOXB13	17	46804345	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	149867	46804345	34390865	5952	74197											
TTLL6	284076	broad.mit.edu	37	chr17	46847394	46847394	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtcacagccagggttggCggagactttggggagattga	18	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46847394	T	T	46847394	2	4	61	1	0	0	0	0	0	0	0	1	16857	755	27	4		4	TTLL6	17	46847394	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	43049	46847394	34347816	5953	74198											
TTLL6	284076	broad.mit.edu	37	chr17	46862326	46862326	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgcagaggcagacttggCctccttgatgctgaagttgg	13	10	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46862326	G	G	46862326	3	3	61	1	0	0	0	0	1	0	0	0	16857	739	26	4	688	4	TTLL6	17	46862326	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14932	46862326	34332884	5954	74199											
TTLL6	284076	broad.mit.edu	37	chr17	46878869	46878869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacacttaaaccaaggacCatcactagcccaaatacctg	6	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46878869	A	A	46878869	1	1	61	0	1	0	0	0	0	0	0	0	16857	609	21	2		2	TTLL6	17	46878869	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16543	46878869	34316341	5955	74200											
SNF8	11267	broad.mit.edu	37	chr17	47014474	47014474	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcccagcatctcagaccaaAatccttttccagctacaaga	5	15	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47014474	C	C	47014474	3	2	61	1	0	0	0	0	1	0	0	0	14960	14	1	5	539	5	SNF8	17	47014474	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	135605	47014474	34180736	5956	74201											
B4GALNT2	124872	broad.mit.edu	37	chr17	47236186	47236186	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagaaatgggtcctttcatCcttggggccctaggacttgg	12	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47236186	A	A	47236186	1	1	61	0	1	0	0	0	0	0	0	0	1272	870	30	3		3	B4GALNT2	17	47236186	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	221712	47236186	33959024	5957	74202											
B4GALNT2	124872	broad.mit.edu	37	chr17	47237781	47237781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgccagagactctatGgggtccttgatctcatccca	9	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47237781	T	T	47237781	1	4	61	0	1	0	0	0	0	0	0	0	1272	1363	47	2		2	B4GALNT2	17	47237781	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1595	47237781	33957429	5958	74203											
B4GALNT2	124872	broad.mit.edu	37	chr17	47247031	47247031	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggtccaacaccctcaccCgggtccagttcaagctggcc	9	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47247031	A	A	47247031	2	1	61	1	0	0	0	0	0	0	0	1	1272	643	23	1		1	B4GALNT2	17	47247031	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9250	47247031	33948179	5959	74204											
B4GALNT2	124872	broad.mit.edu	37	chr17	47247044	47247044	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcacccgggtccagttcaAgctggccctccactacttca	7	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47247044	C	C	47247044	3	2	61	1	0	0	0	0	1	0	0	0	1272	72	3	5	1715	5	B4GALNT2	17	47247044	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	13	47247044	33948166	5960	74205											
ZNF652	22834	broad.mit.edu	37	chr17	47389454	47389454	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaaatccaccaaaaagctCaaactaaaaaggcatcctac	3	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47389454	A	A	47389454	1	1	61	0	1	0	0	0	0	0	0	0	18192	841	29	3		3	ZNF652	17	47389454	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	142410	47389454	33805756	5961	74206											
ZNF652	22834	broad.mit.edu	37	chr17	47390085	47390085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtttccgcacatgagcCatggtatagaatttcttctc	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47390085	A	A	47390085	3	1	61	1	0	0	0	0	1	0	0	0	18192	594	21	2	813	2	ZNF652	17	47390085	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	631	47390085	33805125	5962	74207											
FAM117A	81558	broad.mit.edu	37	chr17	47797089	47797089	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccaagtgaggcacggacTgtgggtgcactcagggtgca	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47797089	C	C	47797089	1	2	61	0	1	0	0	0	0	0	0	0	5455	1595	55	5		5	FAM117A	17	47797089	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	407004	47797089	33398121	5963	74208											
MYST2	11143	broad.mit.edu	37	chr17	47895246	47895246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattaaaacaattgcttttgGccgctatgagcttgatacct	8	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47895246	T	T	47895246	3	4	61	1	0	0	0	0	1	0	0	0	10197	1203	42	3	1062	3	MYST2	17	47895246	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	98157	47895246	33299964	5964	74209											
RSAD1	55316	broad.mit.edu	37	chr17	48559270	48559270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagacactacataaaggtGcttggcacatagcgaccctt	8	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48559270	T	T	48559270	1	4	61	0	1	0	0	0	0	0	0	0	13805	1334	46	3		3	RSAD1	17	48559270	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	664024	48559270	32635940	5965	74210											
MYCBPAP	84073	broad.mit.edu	37	chr17	48599494	48599494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctccctcaggggtgcagCcctgaggtgactggcagtta	14	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48599494	A	A	48599494	1	1	61	0	1	0	0	0	0	0	0	0	10113	754	26	3		3	MYCBPAP	17	48599494	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40224	48599494	32595716	5966	74211											
CACNA1G	8913	broad.mit.edu	37	chr17	48703714	48703714	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccacgggacctgaagaagTgctacagcgtggaggcccag	14	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48703714	A	A	48703714	3	1	61	1	0	0	0	0	1	0	0	0	2570	1696	59	5	7153	5	CACNA1G	17	48703714	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	104220	48703714	32491496	5967	74212											
ABCC3	8714	broad.mit.edu	37	chr17	48734622	48734622	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggttcaaagtcactgctgGgtcccaggtccctccctcga	11	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48734622	C	C	48734622	1	2	61	0	1	0	0	0	0	0	0	0	54	1247	43	4		4	ABCC3	17	48734622	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30908	48734622	32460588	5968	74213											
ABCC3	8714	broad.mit.edu	37	chr17	48753029	48753029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagatggggagggacagGgtcggcctgtaccccggagg	18	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48753029	T	T	48753029	3	4	61	1	0	0	0	0	1	0	0	0	54	1232	43	2	2918	2	ABCC3	17	48753029	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18407	48753029	32442181	5969	74214											
WFIKKN2	124857	broad.mit.edu	37	chr17	48918082	48918082	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgaccgaggagcctgactCgggccgcgccctggtgactg	16	14	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48918082	A	A	48918082	4	1	61	1	0	0	0	0	0	1	0	0	17486	893	31	3	1439	3	WFIKKN2	17	48918082	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	165053	48918082	32277128	5970	74215											
SPAG9	9043	broad.mit.edu	37	chr17	49133866	49133866	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaattaagatacatacactTgatcaaaacaaaataagaaa	4	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49133866	C	C	49133866	1	2	61	0	1	0	0	0	0	0	0	0	15101	1827	63	5		5	SPAG9	17	49133866	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	215784	49133866	32061344	5971	74216											
CA10	56934	broad.mit.edu	37	chr17	49726546	49726546	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattgaaccaaacttactttTatatgttattcttgtgatag	5	5	1	2	rs71713990		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49726546	C	C	49726546	3	2	61	1	0	0	0	0	1	0	0	0	2537	1763	61	5	371	5	CA10	17	49726546	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	592680	49726546	31468664	5972	74217											
CA10	56934	broad.mit.edu	37	chr17	50145427	50145427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcagagacatgaggattGggagggacccaaagtggtac	15	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50145427	T	T	50145427	1	4	61	0	1	0	0	0	0	0	0	0	2537	1363	47	2		2	CA10	17	50145427	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	418881	50145427	31049783	5973	74218											
TOM1L1	10040	broad.mit.edu	37	chr17	52978094	52978094	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgccccgcagcggcagcgcAgaacgcaccgcctctgccag	13	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52978094	G	G	52978094	1	3	61	0	1	0	0	0	0	0	0	0	16475	203	7	5		5	TOM1L1	17	52978094	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2832667	52978094	28217116	5974	74219											
TOM1L1	10040	broad.mit.edu	37	chr17	52978152	52978152	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgaagaggaggagccaagGgtaccgagcgggtggagtcg	21	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52978152	T	T	52978152	1	4	61	0	1	0	0	0	0	0	0	0	16475	1247	43	2		2	TOM1L1	17	52978152	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	58	52978152	28217058	5975	74220											
TOM1L1	10040	broad.mit.edu	37	chr17	52993034	52993034	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttttcatccagcaaatgtCccatgggggcaggaaacaag	10	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52993034	T	T	52993034	1	4	61	0	1	0	0	0	0	0	0	0	16475	870	30	4		4	TOM1L1	17	52993034	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14882	52993034	28202176	5976	74221											
TRIM25	7706	broad.mit.edu	37	chr17	54978620	54978620	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcaggatgaagcagacTccccaccagcctccagacag	9	14	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54978620	A	A	54978620	1	1	61	0	1	0	0	0	0	0	0	0	16623	1566	54	5		5	TRIM25	17	54978620	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1985586	54978620	26216590	5977	74222											
COIL	8161	broad.mit.edu	37	chr17	55038405	55038405	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttggtgctcaacggaagccGagagataccacggggccacc	13	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55038405	T	T	55038405	1	4	61	0	1	0	0	0	0	0	0	0	3697	1073	37	3		3	COIL	17	55038405	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59785	55038405	26156805	5978	74223											
CUEDC1	404093	broad.mit.edu	37	chr17	55945054	55945054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctctgctatcctaggccCtgtttgagaagcatgaatag	10	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55945054	A	A	55945054	1	1	61	0	1	0	0	0	0	0	0	0	4085	696	24	2		2	CUEDC1	17	55945054	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	906649	55945054	25250156	5979	74224											
OR4D2	124538	broad.mit.edu	37	chr17	56247355	56247355	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgggaggtgccatggtcttCttcctctcagtgatggcctt	12	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56247355	T	T	56247355	2	4	61	1	0	0	0	0	0	0	0	1	11150	912	32	4		4	OR4D2	17	56247355	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	302301	56247355	24947855	5980	74225											
EPX	8288	broad.mit.edu	37	chr17	56270120	56270120	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgagaggtcggctggggGtcctcaaagtgagaggggag	20	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56270120	T	T	56270120	1	4	61	0	1	0	0	0	0	0	0	0	5242	1276	44	3		3	EPX	17	56270120	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22765	56270120	24925090	5981	74226											
EPX	8288	broad.mit.edu	37	chr17	56270341	56270341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggaaggggaagcacttGggtcttggagggggtcttgt	18	4	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56270341	T	T	56270341	1	4	61	0	1	0	0	0	0	0	0	0	5242	1363	47	2		2	EPX	17	56270341	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	221	56270341	24924869	5982	74227											
MKS1	54903	broad.mit.edu	37	chr17	56284417	56284417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaccataagttctcagCgtgaagtcactccaaagaca	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56284417	A	A	56284417	1	1	61	0	1	0	0	0	0	0	0	0	9702	783	27	3		3	MKS1	17	56284417	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14076	56284417	24910793	5983	74228											
HSF5	124535	broad.mit.edu	37	chr17	56565664	56565664	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggccggggcctcgcccccCgagcctagctctcccacacc	11	22	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56565664	A	A	56565664	1	1	61	0	1	0	0	0	0	0	0	0	7466	667	23	1		1	HSF5	17	56565664	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	281247	56565664	24629546	5984	74229											
MTMR4	9110	broad.mit.edu	37	chr17	56582511	56582511	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtagggaagacaggacCtacagcagataaaagcatct	12	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56582511	T	T	56582511	1	4	61	0	1	0	0	0	0	0	0	0	10040	696	24	4		4	MTMR4	17	56582511	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16847	56582511	24612699	5985	74230											
C17orf47	284083	broad.mit.edu	37	chr17	56620460	56620460	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctctggagtaacaaacatgGatgacttgtgggagccctca	12	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56620460	A	A	56620460	3	1	61	1	0	0	0	0	1	0	0	0	1874	1174	41	4	632	4	C17orf47	17	56620460	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37949	56620460	24574750	5986	74231											
TEX14	56155	broad.mit.edu	37	chr17	56650685	56650685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatctaaagaattaagagCacacagtaatgatgagaaga	9	4	1	6			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56650685	A	A	56650685	1	1	61	0	1	0	0	0	0	0	0	0	15900	725	25	3		3	TEX14	17	56650685	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30225	56650685	24544525	5987	74232											
TEX14	56155	broad.mit.edu	37	chr17	56694845	56694845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggtgggagatggggccCgatgattctccagttagtcc	14	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56694845	A	A	56694845	1	1	61	0	1	0	0	0	0	0	0	0	15900	667	23	1		1	TEX14	17	56694845	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44160	56694845	24500365	5988	74233											
TRIM37	4591	broad.mit.edu	37	chr17	57128626	57128626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtctgtgcagcttccaaCtgagtaatgtaccaatgctg	9	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57128626	A	A	57128626	3	1	61	1	0	0	0	0	1	0	0	0	16635	564	20	3	1683	3	TRIM37	17	57128626	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	433781	57128626	24066584	5989	74234											
PRR11	55771	broad.mit.edu	37	chr17	57256024	57256024	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaggtgaggtggatgggaaAgaggagaatgactttcactg	16	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57256024	T	T	57256024	1	4	61	0	1	0	0	0	0	0	0	0	12689	87	3	5		5	PRR11	17	57256024	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	127398	57256024	23939186	5990	74235											
PRR11	55771	broad.mit.edu	37	chr17	57257096	57257096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcttgagcccacacagcGtctccgccacccaggtctcc	7	19	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57257096	T	T	57257096	1	4	61	0	1	0	0	0	0	0	0	0	12689	1160	40	3		3	PRR11	17	57257096	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1072	57257096	23938114	5991	74236											
HEATR6	63897	broad.mit.edu	37	chr17	58150535	58150535	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccacatacctgagacataAgtttgccatacaatgtactg	7	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58150535	C	C	58150535	3	2	61	1	0	0	0	0	1	0	0	0	7100	69	3	5	3039	5	HEATR6	17	58150535	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	893439	58150535	23044675	5992	74237											
APPBP2	10513	broad.mit.edu	37	chr17	58529351	58529351	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggctacttcataatcttctTgaccaagaagttgttcttta	7	8	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58529351	A	A	58529351	3	1	61	1	0	0	0	0	1	0	0	0	818	1812	63	5	371	5	APPBP2	17	58529351	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	378816	58529351	22665859	5993	74238											
BCAS3	54828	broad.mit.edu	37	chr17	58757070	58757070	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaagaattggagagttaAgttgacgtattcagcacatt	10	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58757070	C	C	58757070	1	2	61	0	1	0	0	0	0	0	0	0	1357	87	3	5		5	BCAS3	17	58757070	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	227719	58757070	22438140	5994	74239											
MED13	9969	broad.mit.edu	37	chr17	60059767	60059767	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgctccaaagggtgaaaaTaaattagtgcactgatcttg	10	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60059767	C	C	60059767	2	2	61	1	0	0	0	0	0	0	0	1	9523	1403	49	5		5	MED13	17	60059767	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1302697	60059767	21135443	5995	74240											
TLK2	11011	broad.mit.edu	37	chr17	60679594	60679594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagatgtggctctgctatGctgaagtgttgataatgaat	12	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60679594	T	T	60679594	1	4	61	0	1	0	0	0	0	0	0	0	16067	1334	46	3		3	TLK2	17	60679594	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	619827	60679594	20515616	5996	74241											
TLK2	11011	broad.mit.edu	37	chr17	60683536	60683536	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgggaaagaaccaccaaaGatctcaaataaagttgatgt	9	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60683536	A	A	60683536	2	1	61	1	0	0	0	0	0	0	0	1	16067	933	33	4		4	TLK2	17	60683536	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3942	60683536	20511674	5997	74242											
MRC2	9902	broad.mit.edu	37	chr17	60758522	60758522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggcagcagatgtggaaGggggctggctgtccacacac	17	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60758522	T	T	60758522	1	4	61	0	1	0	0	0	0	0	0	0	9852	1015	35	2		2	MRC2	17	60758522	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	74986	60758522	20436688	5998	74243											
TANC2	26115	broad.mit.edu	37	chr17	61497616	61497616	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatgttgaaaatgtttccAttggcctccagacagaggcc	11	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61497616	G	G	61497616	3	3	61	1	0	0	0	0	1	0	0	0	15664	217	8	5	4371	5	TANC2	17	61497616	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	739094	61497616	19697594	5999	74244											
KCNH6	81033	broad.mit.edu	37	chr17	61615426	61615426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctccgccccgcccccagCcctgatgtacgccagcatct	7	21	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61615426	A	A	61615426	3	1	61	1	0	0	0	0	1	0	0	0	8106	753	26	3	1528	3	KCNH6	17	61615426	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	117810	61615426	19579784	6000	74245											
FTSJ3	117246	broad.mit.edu	37	chr17	61897779	61897779	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccactccggaagctccccctCatcctcattaaatgtgtacc	5	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61897779	A	A	61897779	4	1	61	1	0	0	0	0	0	1	0	0	6149	835	29	3	463	3	FTSJ3	17	61897779	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	282353	61897779	19297431	6001	74246											
GH2	2689	broad.mit.edu	37	chr17	61958341	61958341	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtgctgcccgggggctctGaccacaggtctaccccatcc	11	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958341	T	T	61958341	1	4	61	0	1	0	0	0	0	0	0	0	6432	1305	45	3		3	GH2	17	61958341	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	60562	61958341	19236869	6002	74247											
GH2	2689	broad.mit.edu	37	chr17	61958487	61958487	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggaatgaatacttctgctCcttcaggatataggcttctt	8	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61958487	A	A	61958487	4	1	61	1	0	0	0	0	0	1	0	0	6432	864	30	3	809	3	GH2	17	61958487	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	146	61958487	19236723	6003	74248											
CD79B	974	broad.mit.edu	37	chr17	62007104	62007104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctcctctgcggtccccCaaggcttcccccgtcccctg	9	21	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62007104	A	A	62007104	1	1	61	0	1	0	0	0	0	0	0	0	3067	609	21	2		2	CD79B	17	62007104	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	48617	62007104	19188106	6004	74249											
SCN4A	6329	broad.mit.edu	37	chr17	62020584	62020584	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagatgacagagagagagaGagagagagagagaaaggagg	19	1	0	8			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62020584	C	C	62020584	1	2	61	0	1	0	0	0	0	0	0	0	14033	957	33	4		4	SCN4A	17	62020584	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13480	62020584	19174626	6005	74250											
SCN4A	6329	broad.mit.edu	37	chr17	62026918	62026918	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacagggtcacatgacatcTgggtccctgagagaccccct	10	15	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62026918	A	A	62026918	1	1	61	0	1	0	0	0	0	0	0	0	14033	1595	55	5		5	SCN4A	17	62026918	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6334	62026918	19168292	6006	74251											
SCN4A	6329	broad.mit.edu	37	chr17	62034576	62034576	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggtgaggcacatggcttgGccggccacctccatgcagtc	13	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62034576	A	A	62034576	2	1	61	1	0	0	0	0	0	0	0	1	14033	1190	42	4		4	SCN4A	17	62034576	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7658	62034576	19160634	6007	74252											
SCN4A	6329	broad.mit.edu	37	chr17	62036874	62036874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctcccacccaactcccaCctcctggcagaggctgcggg	10	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62036874	A	A	62036874	1	1	61	0	1	0	0	0	0	0	0	0	14033	522	18	3		3	SCN4A	17	62036874	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2298	62036874	19158336	6008	74253											
ICAM2	3384	broad.mit.edu	37	chr17	62081157	62081157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcctcctgcggagcagGggctgccttcccgaaggtct	15	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62081157	T	T	62081157	3	4	61	1	0	0	0	0	1	0	0	0	7550	1232	43	2	339	2	ICAM2	17	62081157	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44283	62081157	19114053	6009	74254											
ERN1	2081	broad.mit.edu	37	chr17	62122776	62122776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttcaccacggctctccCgcctctctctaactgcttca	4	19	6	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62122776	A	A	62122776	3	1	61	1	0	0	0	0	1	0	0	0	5279	652	23	1	349	1	ERN1	17	62122776	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41619	62122776	19072434	6010	74255											
POLG2	11232	broad.mit.edu	37	chr17	62492735	62492735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccctgaacaccaccaCcgaggtccaccattctgcgg	8	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62492735	A	A	62492735	3	1	61	1	0	0	0	0	1	0	0	0	12296	507	18	3	1137	3	POLG2	17	62492735	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	369959	62492735	18702475	6011	74256											
RGS9	8787	broad.mit.edu	37	chr17	63157068	63157068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggttgttataattgagtGgaagatagttttgagctgta	13	1	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63157068	T	T	63157068	1	4	61	0	1	0	0	0	0	0	0	0	13422	1363	47	2		2	RGS9	17	63157068	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	664333	63157068	18038142	6012	74257											
RGS9	8787	broad.mit.edu	37	chr17	63206851	63206851	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagggtagggtcagagtctaGaaggttccattccccatttg	12	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63206851	T	T	63206851	1	4	61	0	1	0	0	0	0	0	0	0	13422	957	33	3		3	RGS9	17	63206851	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	49783	63206851	17988359	6013	74258											
RGS9	8787	broad.mit.edu	37	chr17	63221338	63221339	+	Nonsense_Mutation	DNP	CA	AC	AC													ttggagcagaaaggggagtgCagcgggtccatggccccccg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	63221339	AC	AC	63221338	4	1	61	1	0	0	0	0	0	1	0	0	13422	718	25	3	1751	3	RGS9	17	63221338	Nonsense_Mutation	DNP	CA	TCGA-17-Z031-01A-01W-0746-08	14487	63221338	17973872	6014	74259											
AXIN2	8313	broad.mit.edu	37	chr17	63545568	63545568	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccagctgaggatgacagacGattctggctaagtgctcagg	14	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63545568	T	T	63545568	1	4	61	0	1	0	0	0	0	0	0	0	1242	1073	37	3		3	AXIN2	17	63545568	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	324230	63545568	17649642	6015	74260											
CCDC46	201134	broad.mit.edu	37	chr17	63997027	63997027	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatgcagctatctggcatGggctgatcgtcctgcgctgt	13	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63997027	A	A	63997027	1	1	61	0	1	0	0	0	0	0	0	0	2845	1363	47	4		4	CCDC46	17	63997027	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	451459	63997027	17198183	6016	74261											
CACNG5	27091	broad.mit.edu	37	chr17	64880797	64880797	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaaagcccgtcaccctaAgtatggataggctgggcctg	13	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64880797	C	C	64880797	1	2	61	0	1	0	0	0	0	0	0	0	2586	72	3	5		5	CACNG5	17	64880797	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	883770	64880797	16314413	6017	74262											
HELZ	9931	broad.mit.edu	37	chr17	65162584	65162584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttaataagatatcgcCtttttgtacctgttaggact	6	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65162584	A	A	65162584	1	1	61	0	1	0	0	0	0	0	0	0	7116	696	24	2		2	HELZ	17	65162584	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	281787	65162584	16032626	6018	74263											
ARSG	22901	broad.mit.edu	37	chr17	66303864	66303864	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaatgaggtgagtcttgaGatgccaggccagcctttctt	14	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66303864	T	T	66303864	1	4	61	0	1	0	0	0	0	0	0	0	996	957	33	3		3	ARSG	17	66303864	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1141280	66303864	14891346	6019	74264											
ABCA8	10351	broad.mit.edu	37	chr17	66878643	66878643	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcaattacctactaaaaTagtgatcctcatttgtaagg	7	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66878643	C	C	66878643	1	2	61	0	1	0	0	0	0	0	0	0	38	1421	49	5		5	ABCA8	17	66878643	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	574779	66878643	14316567	6020	74265											
ABCA8	10351	broad.mit.edu	37	chr17	66883268	66883268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaataaccaacagcacatgGgatctaaaatcaacaggaat	8	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66883268	T	T	66883268	3	4	61	1	0	0	0	0	1	0	0	0	38	1232	43	2	1606	2	ABCA8	17	66883268	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4625	66883268	14311942	6021	74266											
ABCA8	10351	broad.mit.edu	37	chr17	66902052	66902052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcaatgttgacagggatGcgtttcatttttacacaagc	9	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66902052	T	T	66902052	1	4	61	0	1	0	0	0	0	0	0	0	38	1334	46	3		3	ABCA8	17	66902052	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18784	66902052	14293158	6022	74267											
ABCA9	10350	broad.mit.edu	37	chr17	67004494	67004494	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttagaaatattatcctgAtttagcaaatgataccacca	4	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67004494	G	G	67004494	1	3	61	0	1	0	0	0	0	0	0	0	39	348	12	5		5	ABCA9	17	67004494	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	102442	67004494	14190716	6023	74268											
ABCA9	10350	broad.mit.edu	37	chr17	67022356	67022356	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgtctataatctcatatatCctgcattctagctaaaaaag	4	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67022356	A	A	67022356	1	1	61	0	1	0	0	0	0	0	0	0	39	870	30	3		3	ABCA9	17	67022356	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17862	67022356	14172854	6024	74269											
ABCA6	23460	broad.mit.edu	37	chr17	67080687	67080687	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaatatctggtcaagacaaGgtttttggaaaatccaagca	9	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67080687	C	C	67080687	1	2	61	0	1	0	0	0	0	0	0	0	36	1015	35	4		4	ABCA6	17	67080687	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	58331	67080687	14114523	6025	74270											
ABCA6	23460	broad.mit.edu	37	chr17	67081858	67081858	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcaatcccaaaatttcacCtgaaagaaagaatcagacta	5	9	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67081858	A	A	67081858	5	1	61	1	0	0	0	0	0	0	1	0	36	695	24	2	952	2	ABCA6	17	67081858	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1171	67081858	14113352	6026	74271											
ABCA6	23460	broad.mit.edu	37	chr17	67098978	67098978	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaaggcaaacatacctTttgtttaccagaaactatga	6	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67098978	A	A	67098978	4	1	61	1	0	0	0	0	0	1	0	0	36	1850	64	5	2057	5	ABCA6	17	67098978	Nonsense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17120	67098978	14096232	6027	74272											
ABCA6	23460	broad.mit.edu	37	chr17	67130984	67130984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatctagaggagactctacCagtaaacttttttggtggtg	10	7	2	2	rs71357714		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67130984	A	A	67130984	1	1	61	0	1	0	0	0	0	0	0	0	36	609	21	2		2	ABCA6	17	67130984	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32006	67130984	14064226	6028	74273											
ABCA5	23461	broad.mit.edu	37	chr17	67247941	67247941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagacagcctctgcctcCtccatatagtgagtggtcag	9	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67247941	A	A	67247941	3	1	61	1	0	0	0	0	1	0	0	0	35	680	24	2	466	2	ABCA5	17	67247941	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	116957	67247941	13947269	6029	74274											
MAP2K6	5608	broad.mit.edu	37	chr17	67456129	67456129	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccttccaccttccctccctCcctccctccctttcttcttt	1	23	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67456129	T	T	67456129	1	4	61	0	1	0	0	0	0	0	0	0	9333	870	30	4		4	MAP2K6	17	67456129	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	208188	67456129	13739081	6030	74275											
MAP2K6	5608	broad.mit.edu	37	chr17	67487409	67487409	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctcctgcctcagcctccTgagtagctgggattacaggc	10	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67487409	A	A	67487409	1	1	61	0	1	0	0	0	0	0	0	0	9333	1595	55	5		5	MAP2K6	17	67487409	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31280	67487409	13707801	6031	74276											
KCNJ2	3759	broad.mit.edu	37	chr17	68171862	68171862	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttggtggaagctcatgttCgagcacagctcctcaaatcc	9	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68171862	A	A	68171862	2	1	61	1	0	0	0	0	0	0	0	1	8121	876	31	3		3	KCNJ2	17	68171862	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	684453	68171862	13023348	6032	74277											
SLC39A11	201266	broad.mit.edu	37	chr17	70824409	70824409	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggattatctggaggatcccaCtgtaatcataagggtcctta	10	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70824409	G	G	70824409	1	3	61	0	1	0	0	0	0	0	0	0	14728	580	20	4		4	SLC39A11	17	70824409	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2652547	70824409	10370801	6033	74278											
SLC39A11	201266	broad.mit.edu	37	chr17	70913587	70913587	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactagagggaagaagtgagGggggatttgggaacacctgg	18	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70913587	A	A	70913587	1	1	61	0	1	0	0	0	0	0	0	0	14728	1247	43	4		4	SLC39A11	17	70913587	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	89178	70913587	10281623	6034	74279											
C17orf80	55028	broad.mit.edu	37	chr17	71238241	71238241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgactttcaacacttagctGcagtccaatgcagaaatctt	6	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71238241	A	A	71238241	1	1	61	0	1	0	0	0	0	0	0	0	1902	1334	46	4		4	C17orf80	17	71238241	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	324654	71238241	9956969	6035	74280											
SDK2	54549	broad.mit.edu	37	chr17	71410867	71410867	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtggaattggtggcttcCgcgtgcacattgcccggagg	16	10	0	0	rs139471859		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71410867	T	T	71410867	2	4	61	1	0	0	0	0	0	0	0	1	14082	639	23	4		4	SDK2	17	71410867	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	172626	71410867	9784343	6036	74281											
SDK2	54549	broad.mit.edu	37	chr17	71443715	71443715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accattgctaagatttaatgGcccgctccaagatcggtccc	8	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71443715	T	T	71443715	1	4	61	0	1	0	0	0	0	0	0	0	14082	1218	42	3		3	SDK2	17	71443715	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32848	71443715	9751495	6037	74282											
SDK2	54549	broad.mit.edu	37	chr17	71591372	71591372	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggaggagggaggaaaggGaggtctgagagatggggaga	24	1	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71591372	T	T	71591372	1	4	61	0	1	0	0	0	0	0	0	0	14082	1189	41	3		3	SDK2	17	71591372	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	147657	71591372	9603838	6038	74283											
TTYH2	94015	broad.mit.edu	37	chr17	72233660	72233660	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggagtactacaggtgaagGaccggtgggaggcagaggga	20	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72233660	T	T	72233660	1	4	61	0	1	0	0	0	0	0	0	0	16866	1189	41	3		3	TTYH2	17	72233660	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	642288	72233660	8961550	6039	74284											
TTYH2	94015	broad.mit.edu	37	chr17	72248390	72248390	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggattatctggacgctctTgctggcatctgctacgacgg	12	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72248390	A	A	72248390	2	1	61	1	0	0	0	0	0	0	0	1	16866	1799	63	5		5	TTYH2	17	72248390	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	14730	72248390	8946820	6040	74285											
CD300LB	124599	broad.mit.edu	37	chr17	72522097	72522097	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgcatgtatcccagcGcacccctcggcaccaccact	7	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72522097	A	A	72522097	3	1	61	1	0	0	0	0	1	0	0	0	3029	1087	38	4	457	4	CD300LB	17	72522097	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	273707	72522097	8673113	6041	74286											
TMEM104	54868	broad.mit.edu	37	chr17	72784942	72784942	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagcttcgtgaccaccaCctttgtgatagaggccatgg	10	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72784942	T	T	72784942	3	4	61	1	0	0	0	0	1	0	0	0	16141	507	18	4	192	4	TMEM104	17	72784942	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	262845	72784942	8410268	6042	74287											
C17orf28	283987	broad.mit.edu	37	chr17	72954413	72954413	+	Intron	DEL	C	-	-													cctgggcccggccgcacgagCcccctcaccacaatgagcag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72954413	-	-	72954413	6	5	61	0	1	1	0	1	0	0	0	0	1869	754	26	0		0	C17orf28	17	72954413	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	169471	72954413	8240797	6043	74288											
NUP85	79902	broad.mit.edu	37	chr17	73230881	73230881	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccccttttggaacagaaaCaggtgaaggttgcagcagca	12	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73230881	T	T	73230881	4	4	61	1	0	0	0	0	0	1	0	0	10865	479	17	4	1831	4	NUP85	17	73230881	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	276468	73230881	7964329	6044	74289											
SAP30BP	29115	broad.mit.edu	37	chr17	73699460	73699460	+	Intron	DEL	G	-	-													aactacccaaaggtgcgtctGgcacacggggctggagggtg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73699460	-	-	73699460	6	5	61	0	1	1	0	1	0	0	0	0	13946	1363	47	0		0	SAP30BP	17	73699460	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	468579	73699460	7495750	6045	74290											
UNC13D	201294	broad.mit.edu	37	chr17	73832211	73832211	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagagacagaggtgggcTgggcagggctgccagaggca	19	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73832211	A	A	73832211	1	1	61	0	1	0	0	0	0	0	0	0	17113	1595	55	5		5	UNC13D	17	73832211	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	132751	73832211	7362999	6046	74291											
UNC13D	201294	broad.mit.edu	37	chr17	73839092	73839092	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggaccctggccccaggtTacctcaagctccctgacccg	12	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73839092	A	A	73839092	1	1	61	0	1	0	0	0	0	0	0	0	17113	1769	61	5		5	UNC13D	17	73839092	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6881	73839092	7356118	6047	74292											
CDK3	1018	broad.mit.edu	37	chr17	74001319	74001319	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatctgggacctgggagggGaatttctcaccccaccctgg	13	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74001319	T	T	74001319	1	4	61	0	1	0	0	0	0	0	0	0	3170	1189	41	3		3	CDK3	17	74001319	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	162227	74001319	7193891	6048	74293											
SRP68	6730	broad.mit.edu	37	chr17	74036610	74036610	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttataatagcacactaatCacaaatgaggcctatcacac	4	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74036610	A	A	74036610	1	1	61	0	1	0	0	0	0	0	0	0	15274	841	29	3		3	SRP68	17	74036610	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	35291	74036610	7158600	6049	74294											
RNF157	114804	broad.mit.edu	37	chr17	74152229	74152229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccttcccggaagaagcaCcaggacactgtgggctgggt	14	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74152229	A	A	74152229	1	1	61	0	1	0	0	0	0	0	0	0	13565	522	18	3		3	RNF157	17	74152229	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	115619	74152229	7042981	6050	74295											
RNF157	114804	broad.mit.edu	37	chr17	74155306	74155306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcagctctgggaacagcCcagagggttactctgcccta	11	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74155306	A	A	74155306	1	1	61	0	1	0	0	0	0	0	0	0	13565	638	22	2		2	RNF157	17	74155306	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3077	74155306	7039904	6051	74296											
SPHK1	8877	broad.mit.edu	37	chr17	74383160	74383160	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctacctccctgtaggAagagtgggttccaagacacc	11	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74383160	T	T	74383160	2	4	61	1	0	0	0	0	0	0	0	1	15164	233	9	5		5	SPHK1	17	74383160	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	227854	74383160	6812050	6052	74297											
RHBDF2	79651	broad.mit.edu	37	chr17	74475137	74475137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccattagggtccccaccCctgcctcctttccccatgga	8	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74475137	A	A	74475137	1	1	61	0	1	0	0	0	0	0	0	0	13429	638	22	2		2	RHBDF2	17	74475137	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	91977	74475137	6720073	6053	74298											
MFSD11	79157	broad.mit.edu	37	chr17	74774218	74774218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctaggggctaactgtgGctcagtgtggcccccggtgc	18	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74774218	A	A	74774218	1	1	61	0	1	0	0	0	0	0	0	0	9622	1218	42	4		4	MFSD11	17	74774218	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	299081	74774218	6420992	6054	74299											
MGAT5B	146664	broad.mit.edu	37	chr17	74899322	74899322	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagctgcctcccgcacgcAggcctccctccctgggctcc	11	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74899322	T	T	74899322	1	4	61	0	1	0	0	0	0	0	0	0	9642	203	7	5		5	MGAT5B	17	74899322	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	125104	74899322	6295888	6055	74300											
MGAT5B	146664	broad.mit.edu	37	chr17	74934143	74934143	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtactacgagagccagcGgccccccgaggtgccagcct	13	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74934143	A	A	74934143	3	1	61	1	0	0	0	0	1	0	0	0	9642	1116	39	4	1643	4	MGAT5B	17	74934143	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34821	74934143	6261067	6056	74301											
MGAT5B	146664	broad.mit.edu	37	chr17	74944047	74944047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggcctggccccccgcgCacgccctgcgggcctggctg	16	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74944047	A	A	74944047	3	1	61	1	0	0	0	0	1	0	0	0	9642	710	25	3	2216	3	MGAT5B	17	74944047	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9904	74944047	6251163	6057	74302											
SEPT9	10801	broad.mit.edu	37	chr17	75398825	75398825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttggatgctgtggtaatGgggggcctggttgctggctt	18	6	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75398825	T	T	75398825	1	4	61	0	1	0	0	0	0	0	0	0	14184	1363	47	2		2	SEPT9	17	75398825	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	454778	75398825	5796385	6058	74303											
TMC6	11322	broad.mit.edu	37	chr17	76115372	76115372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggaggcaagcagaggacCctcaccaggtcagagtctgc	14	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76115372	A	A	76115372	1	1	61	0	1	0	0	0	0	0	0	0	16112	638	22	2		2	TMC6	17	76115372	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	716547	76115372	5079838	6059	74304											
BIRC5	332	broad.mit.edu	37	chr17	76210464	76210464	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaccgcatctctacattcAagaactggcccttcttggag	7	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76210464	G	G	76210464	3	3	61	1	0	0	0	0	1	0	0	0	1443	131	5	5	69	5	BIRC5	17	76210464	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	95092	76210464	4984746	6060	74305											
DNAH17	8632	broad.mit.edu	37	chr17	76558088	76558088	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacaaaggagaagggggcctCttcaccacagtctcctcccc	10	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76558088	A	A	76558088	1	1	61	0	1	0	0	0	0	0	0	0	4641	928	32	3		3	DNAH17	17	76558088	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	347624	76558088	4637122	6061	74306											
LGALS3BP	3959	broad.mit.edu	37	chr17	76968425	76968425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgggaggcacgctcccCccagctccaggtgtccacgg	12	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76968425	A	A	76968425	3	1	61	1	0	0	0	0	1	0	0	0	8816	623	22	2	770	2	LGALS3BP	17	76968425	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	410337	76968425	4226785	6062	74307											
CCDC40	55036	broad.mit.edu	37	chr17	78073265	78073265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatctgagtttgtgggggGccagcaggtgtctttcttct	15	7	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78073265	T	T	78073265	1	4	61	0	1	0	0	0	0	0	0	0	2839	1218	42	3		3	CCDC40	17	78073265	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1104840	78073265	3121945	6063	74308											
EIF4A3	9775	broad.mit.edu	37	chr17	78113719	78113720	+	Intron	DNP	CC	TA	TA													tgcaaaagtctaccgtgcggCctaccaaatcgaaagctgtc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	78113720	TA	TA	78113719	1	4	61	0	1	0	0	0	0	0	0	0	5068	754	26	4		4	EIF4A3	17	78113719	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	40454	78113719	3081491	6064	74309											
CARD14	79092	broad.mit.edu	37	chr17	78156517	78156517	+	Frame_Shift_Del	DEL	A	-	-													tcgccttcctggagagcctgAagttccacaaccctgacgtc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78156517	-	-	78156517	7	5	61	1	0	1	0	1	0	0	0	0	2672	247	9	0	283	0	CARD14	17	78156517	Frame_Shift_Del	DEL	A	TCGA-17-Z031-01A-01W-0746-08	42798	78156517	3038693	6065	74310											
RNF213	57674	broad.mit.edu	37	chr17	78317028	78317028	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattcgactgatcgaccctcAggtggatgagagccgagtcc	12	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78317028	T	T	78317028	3	4	61	1	0	0	0	0	1	0	0	0	13588	188	7	5	6507	5	RNF213	17	78317028	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	160511	78317028	2878182	6066	74311											
RNF213	57674	broad.mit.edu	37	chr17	78350800	78350800	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatgaccccacactcctttGagcttcaaagggtgtccaga	9	12	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78350800	C	C	78350800	1	2	61	0	1	0	0	0	0	0	0	0	13588	1305	45	4		4	RNF213	17	78350800	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33772	78350800	2844410	6067	74312											
RNF213	57674	broad.mit.edu	37	chr17	78359421	78359421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatcgcttgagacgaacGgttagtatcctgtcccctgt	12	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78359421	T	T	78359421	3	4	61	1	0	0	0	0	1	0	0	0	13588	1130	39	1	15096	1	RNF213	17	78359421	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8621	78359421	2835789	6068	74313											
NPTX1	4884	broad.mit.edu	37	chr17	78446958	78446958	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacatgagctggggccctgGggcctcgccctgccgccctg	14	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78446958	A	A	78446958	1	1	61	0	1	0	0	0	0	0	0	0	10697	1247	43	4		4	NPTX1	17	78446958	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	87537	78446958	2748252	6069	74314											
COLEC12	81035	broad.mit.edu	37	chr18	460317	460317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttatggactttgtgtcaCcttttgaatcccccatcccc	6	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	460317	A	A	460317	1	1	61	0	1	0	0	0	0	0	0	0	3744	522	18	3		3	COLEC12	18	460317	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08		460317	77616931	6070	74315											
CLUL1	27098	broad.mit.edu	37	chr18	619382	619382	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacagtcattgaaaataatGtctgttcttacacagatctg	7	7	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	619382	A	A	619382	1	1	61	0	1	0	0	0	0	0	0	0	3602	1392	48	4		4	CLUL1	18	619382	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	159065	619382	77457866	6071	74316											
SMCHD1	23347	broad.mit.edu	37	chr18	2688415	2688415	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattcaggatatgttcgtcCagtaccagtgccacgcagtt	9	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2688415	T	T	2688415	3	4	61	1	0	0	0	0	1	0	0	0	14902	594	21	4	684	4	SMCHD1	18	2688415	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2069033	2688415	75388833	6072	74317											
DLGAP1	9229	broad.mit.edu	37	chr18	3847434	3847434	+	Intron	DEL	C	-	-													ttcagcaagaaaacaaatctCcaaatctgcaagagtaagag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3847434	-	-	3847434	6	5	61	0	1	1	0	1	0	0	0	0	4599	870	30	0		0	DLGAP1	18	3847434	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	1159019	3847434	74229814	6073	74318											
DLGAP1	9229	broad.mit.edu	37	chr18	4175828	4175828	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctgttttggttactgtAaccttgtagtataatttgaa	9	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4175828	T	T	4175828	1	4	61	0	1	0	0	0	0	0	0	0	4599	377	13	5		5	DLGAP1	18	4175828	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	328394	4175828	73901420	6074	74319											
DLGAP1	9229	broad.mit.edu	37	chr18	4260258	4260258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgggctggggactctGctgagggaacacaaaggcaa	16	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4260258	T	T	4260258	1	4	61	0	1	0	0	0	0	0	0	0	4599	1334	46	3		3	DLGAP1	18	4260258	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	84430	4260258	73816990	6075	74320											
EPB41L3	23136	broad.mit.edu	37	chr18	5397212	5397212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagccccctccgtcaaggCagagccctctttccctttaa	6	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5397212	A	A	5397212	3	1	61	1	0	0	0	0	1	0	0	0	5196	710	25	3	597	3	EPB41L3	18	5397212	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1136954	5397212	72680036	6076	74321											
L3MBTL4	91133	broad.mit.edu	37	chr18	6241424	6241424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccttcaagtaatccatcCaaacaaatttatcttttcta	3	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6241424	A	A	6241424	3	1	61	1	0	0	0	0	1	0	0	0	8666	595	21	2	1438	2	L3MBTL4	18	6241424	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	844212	6241424	71835824	6077	74322											
L3MBTL4	91133	broad.mit.edu	37	chr18	6243170	6243170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactactctttatggaacaCaatttcattttggaaatcaa	4	7	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6243170	A	A	6243170	1	1	61	0	1	0	0	0	0	0	0	0	8666	493	17	3		3	L3MBTL4	18	6243170	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1746	6243170	71834078	6078	74323											
LAMA1	284217	broad.mit.edu	37	chr18	6958477	6958477	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagagcaggtacacttactCcaaattgaagatcaggtttt	9	7	1	3	rs73390524	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6958477	A	A	6958477	4	1	61	1	0	0	0	0	0	1	0	0	8677	869	30	3	1300	3	LAMA1	18	6958477	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	715307	6958477	71118771	6079	74324											
LAMA1	284217	broad.mit.edu	37	chr18	6965194	6965194	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gactatcattcaatacccagGaaactactgtggaaaaaaag	7	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6965194	A	A	6965194	1	1	61	0	1	0	0	0	0	0	0	0	8677	1189	41	4		4	LAMA1	18	6965194	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6717	6965194	71112054	6080	74325											
LAMA1	284217	broad.mit.edu	37	chr18	6976128	6976128	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatttagtgacacacaccgGcagctcaccagcagctcaac	7	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6976128	A	A	6976128	1	1	61	0	1	0	0	0	0	0	0	0	8677	1218	42	4		4	LAMA1	18	6976128	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10934	6976128	71101120	6081	74326											
LAMA1	284217	broad.mit.edu	37	chr18	7050581	7050581	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcaaggccactttaaataGagctagatagttatattaaa	6	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7050581	T	T	7050581	1	4	61	0	1	0	0	0	0	0	0	0	8677	957	33	3		3	LAMA1	18	7050581	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	74453	7050581	71026667	6082	74327											
PPP4R1	9989	broad.mit.edu	37	chr18	9547750	9547750	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcccactgaacctcggctCtcatggaagcaggaaagaca	10	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9547750	A	A	9547750	1	1	61	0	1	0	0	0	0	0	0	0	12504	928	32	3		3	PPP4R1	18	9547750	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2497169	9547750	68529498	6083	74328											
CEP192	55125	broad.mit.edu	37	chr18	13042501	13042501	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctttttaagtttttgtggCgatataatatacacacagat	6	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13042501	T	T	13042501	1	4	61	0	1	0	0	0	0	0	0	0	3281	783	27	4		4	CEP192	18	13042501	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3494751	13042501	65034747	6084	74329											
ESCO1	114799	broad.mit.edu	37	chr18	19116137	19116137	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtcaaccatctctctaaTctcgtcaacctgccaaataa	3	13	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19116137	C	C	19116137	3	2	61	1	0	0	0	0	1	0	0	0	5290	1435	50	5	481	5	ESCO1	18	19116137	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6073636	19116137	58961111	6085	74330											
C18orf45	85019	broad.mit.edu	37	chr18	20896907	20896907	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctgcttggccccatttcTacagatgaagaaactgaagc	10	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20896907	A	A	20896907	1	1	61	0	1	0	0	0	0	0	0	0	1921	1537	53	5		5	C18orf45	18	20896907	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1780770	20896907	57180341	6086	74331											
LAMA3	3909	broad.mit.edu	37	chr18	21437854	21437854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgaccgatgtgcttccGggttttaccgctttcctgag	12	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21437854	T	T	21437854	3	4	61	1	0	0	0	0	1	0	0	0	8679	1116	39	1	4313	1	LAMA3	18	21437854	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	540947	21437854	56639394	6087	74332											
LAMA3	3909	broad.mit.edu	37	chr18	21474271	21474271	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgattttagactgcataaAccaagaacccaaagatagca	6	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21474271	G	G	21474271	3	3	61	1	0	0	0	0	1	0	0	0	8679	43	2	5	5765	5	LAMA3	18	21474271	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	36417	21474271	56602977	6088	74333											
LAMA3	3909	broad.mit.edu	37	chr18	21530186	21530186	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttcaatgtctggaggccAcagcgggtcaggtttgtagt	14	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21530186	G	G	21530186	1	3	61	0	1	0	0	0	0	0	0	0	8679	174	6	5		5	LAMA3	18	21530186	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	55915	21530186	56547062	6089	74334											
ZNF521	25925	broad.mit.edu	37	chr18	22642526	22642526	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgcaaaagttcaaacacatGaacatccaacagtttgataa	6	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22642526	T	T	22642526	1	4	61	0	1	0	0	0	0	0	0	0	18092	1305	45	3		3	ZNF521	18	22642526	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1112340	22642526	55434722	6090	74335											
ZNF521	25925	broad.mit.edu	37	chr18	22693140	22693140	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatctggctctaccctatCatccccaaggtgattgagtt	7	12	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22693140	A	A	22693140	1	1	61	0	1	0	0	0	0	0	0	0	18092	841	29	3		3	ZNF521	18	22693140	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	50614	22693140	55384108	6091	74336											
ZNF521	25925	broad.mit.edu	37	chr18	22805578	22805578	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttgtgtttcacatggagCtgcaagtcagtttcgttgcg	13	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805578	T	T	22805578	2	4	61	1	0	0	0	0	0	0	0	1	18092	796	28	4		4	ZNF521	18	22805578	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	112438	22805578	55271670	6092	74337											
ZNF521	25925	broad.mit.edu	37	chr18	22807491	22807491	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatggtgctttaggtagcTgaggcggctaaacgacttgt	13	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22807491	C	C	22807491	3	2	61	1	0	0	0	0	1	0	0	0	18092	1580	55	5	3564	5	ZNF521	18	22807491	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1913	22807491	55269757	6093	74338											
ZNF521	25925	broad.mit.edu	37	chr18	22824247	22824250	+	Intron	DEL	CACA	-	-													acaagctgtgtatgcatgtgCacacacacacacacacacac					rs150932854		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22824250	-	-	22824247	6	5	61	0	1	1	0	1	0	0	0	0	18092	725	25	0		0	ZNF521	18	22824247	Intron	DEL	CACA	TCGA-17-Z031-01A-01W-0746-08	16756	22824247	55253001	6094	74339											
PSMA8	143471	broad.mit.edu	37	chr18	23751236	23751236	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacacagcgacgatgcagttTagcgaaccaaccatgacagc	10	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23751236	C	C	23751236	1	2	61	0	1	0	0	0	0	0	0	0	12779	1769	61	5		5	PSMA8	18	23751236	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	926989	23751236	54326012	6095	74340											
TAF4B	6875	broad.mit.edu	37	chr18	23845381	23845381	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaaaataatgtaagacatGattctattcagctttttagg	6	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23845381	T	T	23845381	1	4	61	0	1	0	0	0	0	0	0	0	15646	1305	45	3		3	TAF4B	18	23845381	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	94145	23845381	54231867	6096	74341											
TAF4B	6875	broad.mit.edu	37	chr18	23875235	23875235	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttctgtcatctcttggttgGatgaagttcatctgctggta	11	7	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23875235	A	A	23875235	1	1	61	0	1	0	0	0	0	0	0	0	15646	1189	41	4		4	TAF4B	18	23875235	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29854	23875235	54202013	6097	74342											
TAF4B	6875	broad.mit.edu	37	chr18	23908143	23908143	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtattttgaggccgggcacAgtggctcatgcctgtaatcc	12	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23908143	G	G	23908143	1	3	61	0	1	0	0	0	0	0	0	0	15646	203	7	5		5	TAF4B	18	23908143	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	32908	23908143	54169105	6098	74343											
KCTD1	284252	broad.mit.edu	37	chr18	24173391	24173393	+	Intron	DEL	GAG	-	-													aggaggagaaggaagaagatGaggaggaggaggaagacaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24173393	-	-	24173391	6	5	61	0	1	1	0	1	0	0	0	0	8166	1305	45	0		0	KCTD1	18	24173391	Intron	DEL	GAG	TCGA-17-Z031-01A-01W-0746-08	265248	24173391	53903857	6099	74344											
KCTD1	284252	broad.mit.edu	37	chr18	24180066	24180066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatccggcttccctgcaGgctgcttcttgtggggaagg	14	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24180066	T	T	24180066	1	4	61	0	1	0	0	0	0	0	0	0	8166	1015	35	2		2	KCTD1	18	24180066	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6675	24180066	53897182	6100	74345											
KCTD1	284252	broad.mit.edu	37	chr18	24180788	24180788	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctcagggcaccagaggacTcactcactggttgctgtgat	11	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24180788	A	A	24180788	1	1	61	0	1	0	0	0	0	0	0	0	8166	1566	54	5		5	KCTD1	18	24180788	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	722	24180788	53896460	6101	74346											
KCTD1	284252	broad.mit.edu	37	chr18	24186956	24186957	+	Intron	DEL	AA	-	-													tcaaatataatcttaactggAaaagtttcttgtccctacct					rs10529759		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24186957	-	-	24186956	6	5	61	0	1	1	0	1	0	0	0	0	8166	261	9	0		0	KCTD1	18	24186956	Intron	DEL	AA	TCGA-17-Z031-01A-01W-0746-08	6168	24186956	53890292	6102	74347											
CDH2	1000	broad.mit.edu	37	chr18	25532211	25532211	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgctcaccaccactacttGaggaattaagggagctcaag	9	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25532211	T	T	25532211	4	4	61	1	0	0	0	0	0	1	0	0	3135	1294	45	3	97	3	CDH2	18	25532211	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1345255	25532211	52545037	6103	74348											
CDH2	1000	broad.mit.edu	37	chr18	25543473	25543473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggctgctgcagctggcTcaagtcatagtcctgcaaaa	11	11	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25543473	A	A	25543473	3	1	61	1	0	0	0	0	1	0	0	0	3135	1551	54	5	366	5	CDH2	18	25543473	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	11262	25543473	52533775	6104	74349											
CDH2	1000	broad.mit.edu	37	chr18	25555616	25555616	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcagacagcagtgtgttatCagctcagtgggccatttgcc	12	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25555616	A	A	25555616	1	1	61	0	1	0	0	0	0	0	0	0	3135	841	29	3		3	CDH2	18	25555616	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12143	25555616	52521632	6105	74350											
CDH2	1000	broad.mit.edu	37	chr18	25591687	25591688	+	Intron	DEL	TA	-	-													cactacagaaattctatcttTatagaaaaacacttttagta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25591688	-	-	25591687	6	5	61	0	1	1	0	1	0	0	0	0	3135	1769	61	0		0	CDH2	18	25591687	Intron	DEL	TA	TCGA-17-Z031-01A-01W-0746-08	36071	25591687	52485561	6106	74351											
DSC3	1825	broad.mit.edu	37	chr18	28574419	28574419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaatttatttttatttaCcttttatgtttaatttttaa	1	2	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28574419	A	A	28574419	1	1	61	0	1	0	0	0	0	0	0	0	4807	521	18	3		3	DSC3	18	28574419	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2982732	28574419	49502829	6107	74352											
DSC3	1825	broad.mit.edu	37	chr18	28598167	28598167	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattaaatccttatcttctAtaggtattcgtaagatttcc	4	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28598167	G	G	28598167	3	3	61	1	0	0	0	0	1	0	0	0	4807	449	16	5	1620	5	DSC3	18	28598167	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	23748	28598167	49479081	6108	74353											
DSC2	1824	broad.mit.edu	37	chr18	28672253	28672253	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcagctgtaaagcactcTttcaggttaactgtagaaaa	8	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28672253	G	G	28672253	3	3	61	1	0	0	0	0	1	0	0	0	4806	1606	56	5	2636	5	DSC2	18	28672253	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	74086	28672253	49404995	6109	74354											
DSG1	1828	broad.mit.edu	37	chr18	28910039	28910039	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatcactcctaacagccAggcacctaactggagactaa	6	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28910039	T	T	28910039	1	4	61	0	1	0	0	0	0	0	0	0	4816	203	7	5		5	DSG1	18	28910039	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	237786	28910039	49167209	6110	74355											
DSG1	1828	broad.mit.edu	37	chr18	28934679	28934679	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcactgtgaccgagtcTtacaccacctctgacactct	6	14	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28934679	G	G	28934679	2	3	61	1	0	0	0	0	0	0	0	1	4816	1596	56	5		5	DSG1	18	28934679	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	24640	28934679	49142569	6111	74356											
DSG4	147409	broad.mit.edu	37	chr18	28968492	28968492	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccacttttcttggtaagtCatagccatatgttttgattt	6	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28968492	A	A	28968492	1	1	61	0	1	0	0	0	0	0	0	0	4819	841	29	3		3	DSG4	18	28968492	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33813	28968492	49108756	6112	74357											
DSG4	147409	broad.mit.edu	37	chr18	28980940	28980940	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgataagaagtcaaaataTattatcaatgggatatacac	6	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28980940	A	A	28980940	4	1	61	1	0	0	0	0	0	1	0	0	4819	1413	49	5	1412	5	DSG4	18	28980940	Nonsense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	12448	28980940	49096308	6113	74358											
DSG4	147409	broad.mit.edu	37	chr18	28986360	28986360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtactcaattaaatccttcTtttcaatagttcttcaaaat	2	8	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28986360	A	A	28986360	1	1	61	0	1	0	0	0	0	0	0	0	4819	1624	56	5		5	DSG4	18	28986360	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5420	28986360	49090888	6114	74359											
FAM59A	64762	broad.mit.edu	37	chr18	29972987	29972987	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcattttcccgcagcccttCtacgcactctcctaggaaat	6	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29972987	A	A	29972987	4	1	61	1	0	0	0	0	0	1	0	0	5643	922	32	3	2514	3	FAM59A	18	29972987	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	986627	29972987	48104261	6115	74360											
ASXL3	80816	broad.mit.edu	37	chr18	31230326	31230326	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaggggaatataggtcActtattccatttccaggccc	10	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31230326	T	T	31230326	1	4	61	0	1	0	0	0	0	0	0	0	1072	174	6	5		5	ASXL3	18	31230326	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1257339	31230326	46846922	6116	74361											
ASXL3	80816	broad.mit.edu	37	chr18	31305439	31305439	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taacaggatctactttacctCctcattcctgttacattagt	4	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31305439	G	G	31305439	1	3	61	0	1	0	0	0	0	0	0	0	1072	870	30	4		4	ASXL3	18	31305439	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	75113	31305439	46771809	6117	74362											
ASXL3	80816	broad.mit.edu	37	chr18	31306801	31306801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcagtctgtatagtgGgtgacaaggcccagtgtgat	15	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31306801	T	T	31306801	1	4	61	0	1	0	0	0	0	0	0	0	1072	1247	43	2		2	ASXL3	18	31306801	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1362	31306801	46770447	6118	74363											
ASXL3	80816	broad.mit.edu	37	chr18	31306911	31306911	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagggcctttgcatttaTattctcttcgcttggctgtt	9	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31306911	C	C	31306911	1	2	61	0	1	0	0	0	0	0	0	0	1072	1421	49	5		5	ASXL3	18	31306911	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	110	31306911	46770337	6119	74364											
DTNA	1837	broad.mit.edu	37	chr18	32428261	32428261	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgctttgttcttaatagcAtgcttgagagttcaaaccgg	9	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32428261	G	G	32428261	3	3	61	1	0	0	0	0	1	0	0	0	4828	231	8	5	1352	5	DTNA	18	32428261	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1121350	32428261	45648987	6120	74365											
MOCOS	55034	broad.mit.edu	37	chr18	33836781	33836781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgagagatatgcaccatGcttaggacatttttattatt	7	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33836781	T	T	33836781	1	4	61	0	1	0	0	0	0	0	0	0	9783	1334	46	3		3	MOCOS	18	33836781	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1408520	33836781	44240467	6121	74366											
FHOD3	80206	broad.mit.edu	37	chr18	33964878	33964878	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gataccaccaccaccaccacCaccaccaccacaaagttttg	3	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33964878	T	T	33964878	1	4	61	0	1	0	0	0	0	0	0	0	5940	609	21	4		4	FHOD3	18	33964878	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	128097	33964878	44112370	6122	74367											
FHOD3	80206	broad.mit.edu	37	chr18	34103106	34103106	+	Intron	DEL	A	-	-													gccccagcgttccttgaaacAactgctggggctgatgttcc					rs35453592		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34103106	-	-	34103106	6	5	61	0	1	1	0	1	0	0	0	0	5940	145	5	0		0	FHOD3	18	34103106	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	138228	34103106	43974142	6123	74368											
KIAA1328	57536	broad.mit.edu	37	chr18	34513788	34513788	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagagggctgtcagtcaggaGagcctacagaacagatgaac	14	8	2	5	rs147466932	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34513788	T	T	34513788	1	4	61	0	1	0	0	0	0	0	0	0	8295	957	33	3		3	KIAA1328	18	34513788	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	410682	34513788	43563460	6124	74369											
CELF4	56853	broad.mit.edu	37	chr18	34853144	34853144	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagctggggcagagggagtgGaaaaaatatcacgtgcttcc	14	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34853144	A	A	34853144	1	1	61	0	1	0	0	0	0	0	0	0	3248	1189	41	4		4	CELF4	18	34853144	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	339356	34853144	43224104	6125	74370											
CELF4	56853	broad.mit.edu	37	chr18	34887079	34887079	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtaggtggctgtgatggcaGaagggggcttgtactccact	17	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34887079	T	T	34887079	1	4	61	0	1	0	0	0	0	0	0	0	3248	957	33	3		3	CELF4	18	34887079	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	33935	34887079	43190169	6126	74371											
CELF4	56853	broad.mit.edu	37	chr18	35047119	35047119	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggggtatcagaaagctactCtggttaaaacattctccctg	9	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35047119	A	A	35047119	1	1	61	0	1	0	0	0	0	0	0	0	3248	928	32	3		3	CELF4	18	35047119	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	160040	35047119	43030129	6127	74372											
CELF4	56853	broad.mit.edu	37	chr18	35060240	35060240	+	Intron	DEL	G	-	-													gggaagatgcaggtgctgatGggacccagactcactgttca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35060240	-	-	35060240	6	5	61	0	1	1	0	1	0	0	0	0	3248	1363	47	0		0	CELF4	18	35060240	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	13121	35060240	43017008	6128	74373											
CELF4	56853	broad.mit.edu	37	chr18	35062483	35062483	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccactggtccagggatgactCcatcagccatcagagggccc	11	15	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35062483	G	G	35062483	1	3	61	0	1	0	0	0	0	0	0	0	3248	870	30	4		4	CELF4	18	35062483	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2243	35062483	43014765	6129	74374											
CELF4	56853	broad.mit.edu	37	chr18	35064496	35064496	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaatacaatacaaaggcTgtcttaatggaaggaaggcc	9	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35064496	C	C	35064496	1	2	61	0	1	0	0	0	0	0	0	0	3248	1595	55	5		5	CELF4	18	35064496	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2013	35064496	43012752	6130	74375											
CELF4	56853	broad.mit.edu	37	chr18	35141987	35141987	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttttcttcctttctctctCtgcctagcacccagataccc	3	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35141987	A	A	35141987	1	1	61	0	1	0	0	0	0	0	0	0	3248	928	32	3		3	CELF4	18	35141987	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	77491	35141987	42935261	6131	74376											
RIT2	6014	broad.mit.edu	37	chr18	40495290	40495290	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttagatagggtaataaagaAtttaaaaaactttactcact	5	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40495290	T	T	40495290	1	4	61	0	1	0	0	0	0	0	0	0	13498	116	4	5		5	RIT2	18	40495290	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	5353303	40495290	37581958	6132	74377											
RIT2	6014	broad.mit.edu	37	chr18	40554063	40554063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagtgtccaagatgtcCaagtaagctggctcattgtc	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40554063	A	A	40554063	3	1	61	1	0	0	0	0	1	0	0	0	13498	593	21	2	455	2	RIT2	18	40554063	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	58773	40554063	37523185	6133	74378											
RIT2	6014	broad.mit.edu	37	chr18	40570052	40570052	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatggaggctaaatcctcaGatctgcagccaacatgctgg	10	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40570052	A	A	40570052	1	1	61	0	1	0	0	0	0	0	0	0	13498	957	33	4		4	RIT2	18	40570052	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15989	40570052	37507196	6134	74379											
RIT2	6014	broad.mit.edu	37	chr18	40573451	40573451	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actccacattaccttcttttCaagggcctgtttcccttgcc	5	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40573451	G	G	40573451	1	3	61	0	1	0	0	0	0	0	0	0	13498	841	29	4		4	RIT2	18	40573451	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3399	40573451	37503797	6135	74380											
RIT2	6014	broad.mit.edu	37	chr18	40693740	40693740	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctcctaaaagcaaataccTaaccagcaaacaaaagcaat	4	11	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40693740	A	A	40693740	1	1	61	0	1	0	0	0	0	0	0	0	13498	1537	53	5		5	RIT2	18	40693740	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	120289	40693740	37383508	6136	74381											
SETBP1	26040	broad.mit.edu	37	chr18	42284729	42284729	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaatttacttatttgtatGaatgagaaatatgtgatcag	8	3	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42284729	A	A	42284729	1	1	61	0	1	0	0	0	0	0	0	0	14242	1305	45	4		4	SETBP1	18	42284729	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1590989	42284729	35792519	6137	74382											
SETBP1	26040	broad.mit.edu	37	chr18	42331108	42331108	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtttgtttgtttttaTggaatgtgtagacagtgaaa	10	1	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42331108	A	A	42331108	1	1	61	0	1	0	0	0	0	0	0	0	14242	1479	51	5		5	SETBP1	18	42331108	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	46379	42331108	35746140	6138	74383											
SETBP1	26040	broad.mit.edu	37	chr18	42539702	42539702	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctggaaatactcttcatAgcagtcaccatgtaagatgg	9	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42539702	T	T	42539702	1	4	61	0	1	0	0	0	0	0	0	0	14242	435	15	5		5	SETBP1	18	42539702	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	208594	42539702	35537546	6139	74384											
SLC14A2	8170	broad.mit.edu	37	chr18	42789022	42789022	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacaacaacaactgtggCcgagcacggtggctcacgtc	10	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42789022	G	G	42789022	1	3	61	0	1	0	0	0	0	0	0	0	14510	754	26	4		4	SLC14A2	18	42789022	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	249320	42789022	35288226	6140	74385											
SLC14A2	8170	broad.mit.edu	37	chr18	42939374	42939374	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcctctctgcatcagccAgttaatgtctaaccctgtgg	8	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42939374	G	G	42939374	1	3	61	0	1	0	0	0	0	0	0	0	14510	203	7	5		5	SLC14A2	18	42939374	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	150352	42939374	35137874	6141	74386											
SLC14A2	8170	broad.mit.edu	37	chr18	43174253	43174253	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaggaaatgcactatagcAatgggatgtttaagtgtaag	11	3	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43174253	T	T	43174253	1	4	61	0	1	0	0	0	0	0	0	0	14510	145	5	5		5	SLC14A2	18	43174253	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	234879	43174253	34902995	6142	74387											
SLC14A2	8170	broad.mit.edu	37	chr18	43203080	43203080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggaagggaagacaggtGgttgtgggagctgaagggct	22	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43203080	T	T	43203080	1	4	61	0	1	0	0	0	0	0	0	0	14510	1363	47	2		2	SLC14A2	18	43203080	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	28827	43203080	34874168	6143	74388											
SLC14A2	8170	broad.mit.edu	37	chr18	43247082	43247082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattctatgagaacaacaCtgaccctgaccctaaaaact	4	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43247082	A	A	43247082	1	1	61	0	1	0	0	0	0	0	0	0	14510	580	20	3		3	SLC14A2	18	43247082	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44002	43247082	34830166	6144	74389											
SIGLEC15	284266	broad.mit.edu	37	chr18	43405708	43405708	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacagcatggaaaagtccatCtggctgctggcctgcttggc	12	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43405708	T	T	43405708	2	4	61	1	0	0	0	0	0	0	0	1	14423	903	32	4		4	SIGLEC15	18	43405708	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	158626	43405708	34671540	6145	74390											
KIAA1632	57724	broad.mit.edu	37	chr18	43458880	43458880	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatatttctactttctctCcttgacactcaatataaatc	1	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43458880	A	A	43458880	1	1	61	0	1	0	0	0	0	0	0	0	8319	870	30	3		3	KIAA1632	18	43458880	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53172	43458880	34618368	6146	74391											
KIAA1632	57724	broad.mit.edu	37	chr18	43550088	43550088	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcagtcaaggatttcatgtCccagccagacaactgactga	9	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43550088	A	A	43550088	1	1	61	0	1	0	0	0	0	0	0	0	8319	870	30	3		3	KIAA1632	18	43550088	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	91208	43550088	34527160	6147	74392											
ZBTB7C	201501	broad.mit.edu	37	chr18	45636701	45636702	+	Intron	INS	-	A	A													tctggccctgccctacccccINSccacctggttcaaagagccg					rs36055075		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45636702	A	A	45636701	6	5	61	0	1	1	1	0	0	0	0	0	17681	638	22	0		0	ZBTB7C	18	45636701	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	2086613	45636701	32440547	6148	74393											
ZBTB7C	201501	broad.mit.edu	37	chr18	45703577	45703577	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggccagctggagggtggctTccaccagcaaagtggtcccc	15	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45703577	A	A	45703577	1	1	61	0	1	0	0	0	0	0	0	0	17681	1798	62	5		5	ZBTB7C	18	45703577	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	66876	45703577	32373671	6149	74394											
ZBTB7C	201501	broad.mit.edu	37	chr18	45706377	45706377	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttccttccttacaaggaaGatatttccccttccttcctt	3	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45706377	A	A	45706377	1	1	61	0	1	0	0	0	0	0	0	0	17681	957	33	4		4	ZBTB7C	18	45706377	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2800	45706377	32370871	6150	74395											
SMAD7	4092	broad.mit.edu	37	chr18	46453681	46453682	+	Intron	INS	-	T	T													gctgacctgagaacactggaINSttttttttttttcatgcttt					rs142024392		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46453682	T	T	46453681	6	5	61	0	1	1	1	0	0	0	0	0	14877	348	12	0		0	SMAD7	18	46453681	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	747304	46453681	31623567	6151	74396											
MYO5B	4645	broad.mit.edu	37	chr18	47501149	47501150	+	Intron	INS	-	CA	CA													gccagcccagcagtctctctINScacacacacacacacacaga					rs146410387	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	47501150	CA	CA	47501149	6	5	61	0	1	1	1	0	0	0	0	0	10173	1566	54	0		0	MYO5B	18	47501149	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1047468	47501149	30576099	6152	74397											
CCDC11	220136	broad.mit.edu	37	chr18	47777800	47777800	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacaggcctgcaaactgTactacacccatggcgttgat	9	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47777800	C	C	47777800	1	2	61	0	1	0	0	0	0	0	0	0	2772	1653	57	5		5	CCDC11	18	47777800	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	276651	47777800	30299448	6153	74398											
ELAC1	55520	broad.mit.edu	37	chr18	48513120	48513120	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaatctgcatattgggtGactgctctggggttgtgggt	15	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48513120	T	T	48513120	3	4	61	1	0	0	0	0	1	0	0	0	5088	1290	45	3	767	3	ELAC1	18	48513120	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	735320	48513120	29564128	6154	74399											
MEX3C	51320	broad.mit.edu	37	chr18	48703429	48703429	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggattggaggagagccaCgcagagccaagagtgccacc	14	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48703429	A	A	48703429	2	1	61	1	0	0	0	0	0	0	0	1	9604	523	19	3		3	MEX3C	18	48703429	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	190309	48703429	29373819	6155	74400											
DCC	1630	broad.mit.edu	37	chr18	49913910	49913910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaagatctttccaatgcAagggagggcaaagccaggct	11	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49913910	T	T	49913910	1	4	61	0	1	0	0	0	0	0	0	0	4315	145	5	5		5	DCC	18	49913910	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1210481	49913910	28163338	6156	74401											
DCC	1630	broad.mit.edu	37	chr18	49954300	49954300	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acactcaaagtattatctcaCgcagctgatctggagccaaa	7	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49954300	G	G	49954300	1	3	61	0	1	0	0	0	0	0	0	0	4315	551	19	4		4	DCC	18	49954300	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	40390	49954300	28122948	6157	74402											
DCC	1630	broad.mit.edu	37	chr18	50197688	50197688	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgtgactgattctaaaAgtgacacatttggcattagc	10	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50197688	C	C	50197688	1	2	61	0	1	0	0	0	0	0	0	0	4315	87	3	5		5	DCC	18	50197688	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	243388	50197688	27879560	6158	74403											
DCC	1630	broad.mit.edu	37	chr18	50432543	50432543	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaccaacaagacctgaCtccaatcccaggtgactccc	7	15	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50432543	T	T	50432543	3	4	61	1	0	0	0	0	1	0	0	0	4315	565	20	4	552	4	DCC	18	50432543	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	234855	50432543	27644705	6159	74404											
DCC	1630	broad.mit.edu	37	chr18	50705443	50705443	+	Frame_Shift_Del	DEL	G	-	-													gcttacaatgaatggggaccGggagagagttctcaacccat					rs151271207		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50705443	-	-	50705443	7	5	61	1	0	1	0	1	0	0	0	0	4315	1103	39	0	1564	0	DCC	18	50705443	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	272900	50705443	27371805	6160	74405											
DCC	1630	broad.mit.edu	37	chr18	50742046	50742046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcactcacccaactgctGtcttgagtacaggatagtgg	9	12	3	1	rs139122378	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50742046	A	A	50742046	1	1	61	0	1	0	0	0	0	0	0	0	4315	1392	48	4		4	DCC	18	50742046	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36603	50742046	27335202	6161	74406											
STARD6	147323	broad.mit.edu	37	chr18	51858163	51858163	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgatgtacactaagtcgaTaaagtctcgaggggaaatgg	12	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51858163	A	A	51858163	3	1	61	1	0	0	0	0	1	0	0	0	15379	1406	49	5	339	5	STARD6	18	51858163	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1116117	51858163	26219085	6162	74407											
RAB27B	5874	broad.mit.edu	37	chr18	52544718	52544718	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttttaaccctgaaaattAaatttatgtcatattttgat	3	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52544718	T	T	52544718	1	4	61	0	1	0	0	0	0	0	0	0	13023	377	13	5		5	RAB27B	18	52544718	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	686555	52544718	25532530	6163	74408											
RAB27B	5874	broad.mit.edu	37	chr18	52552215	52552215	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacttttaaaaaggggttcAaatgtgaggaaaccatgtaa	9	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52552215	T	T	52552215	1	4	61	0	1	0	0	0	0	0	0	0	13023	145	5	5		5	RAB27B	18	52552215	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	7497	52552215	25525033	6164	74409											
TCF4	6925	broad.mit.edu	37	chr18	52937331	52937331	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaatagccaagaatatatCttgtttagatctgacagctt	6	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52937331	A	A	52937331	1	1	61	0	1	0	0	0	0	0	0	0	15817	928	32	3		3	TCF4	18	52937331	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	385116	52937331	25139917	6165	74410											
TCF4	6925	broad.mit.edu	37	chr18	53303467	53303467	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaccagcctgctctgccCagagaagcacattttctgag	8	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53303467	A	A	53303467	1	1	61	0	1	0	0	0	0	0	0	0	15817	609	21	2		2	TCF4	18	53303467	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	366136	53303467	24773781	6166	74411											
WDR7	23335	broad.mit.edu	37	chr18	54446481	54446481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcaccaattacatgatttAgggatgaaatacgtttagta	9	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54446481	T	T	54446481	1	4	61	0	1	0	0	0	0	0	0	0	17447	435	15	5		5	WDR7	18	54446481	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1143014	54446481	23630767	6167	74412											
WDR7	23335	broad.mit.edu	37	chr18	54668684	54668684	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgagccttttgcatgttcAtttctcagtggatccaggca	10	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54668684	G	G	54668684	1	3	61	0	1	0	0	0	0	0	0	0	17447	232	8	5		5	WDR7	18	54668684	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	222203	54668684	23408564	6168	74413											
ONECUT2	9480	broad.mit.edu	37	chr18	55104035	55104035	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgcagagggtgctgtgcCggtctcaggggactctctcc	15	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55104035	T	T	55104035	3	4	61	1	0	0	0	0	1	0	0	0	10963	643	23	4	1089	4	ONECUT2	18	55104035	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	435351	55104035	22973213	6169	74414											
CDH20	28316	broad.mit.edu	37	chr18	59059275	59059275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctagccgaatcttttgccCctcacttaaaaattgtaata	5	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59059275	A	A	59059275	1	1	61	0	1	0	0	0	0	0	0	0	3136	638	22	2		2	CDH20	18	59059275	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3955240	59059275	19017973	6170	74415											
RNF152	220441	broad.mit.edu	37	chr18	59496932	59496932	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcggtccaaacctttcCcctcctcttccaatccaaag	6	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59496932	A	A	59496932	1	1	61	0	1	0	0	0	0	0	0	0	13564	638	22	2		2	RNF152	18	59496932	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	437657	59496932	18580316	6171	74416											
KIAA1468	57614	broad.mit.edu	37	chr18	59933944	59933944	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttgcttaggtaaaacctcAgttccaggagattttaagac	10	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59933944	T	T	59933944	3	4	61	1	0	0	0	0	1	0	0	0	8306	188	7	5	2716	5	KIAA1468	18	59933944	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	437012	59933944	18143304	6172	74417											
KIAA1468	57614	broad.mit.edu	37	chr18	59954861	59954861	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactccactccttcttctagCcatctcataattttaaaaga	2	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59954861	T	T	59954861	1	4	61	0	1	0	0	0	0	0	0	0	8306	754	26	4		4	KIAA1468	18	59954861	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20917	59954861	18122387	6173	74418											
ZCCHC2	54877	broad.mit.edu	37	chr18	60224182	60224183	+	Intron	DNP	GG	TT	TT													aggcctcactgtgaccttccGggagcttccttctgctccct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	60224183	TT	TT	60224182	1	4	61	0	1	0	0	0	0	0	0	0	17713	1131	39	1		1	ZCCHC2	18	60224182	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	269321	60224182	17853066	6174	74419											
SERPINB12	89777	broad.mit.edu	37	chr18	61231353	61231353	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctttctgtctaaatgcGgtagtgtatcagaactcatg	9	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61231353	T	T	61231353	2	4	61	1	0	0	0	0	0	0	0	1	14212	1130	39	1		1	SERPINB12	18	61231353	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1007171	61231353	16845895	6175	74420											
SERPINB13	5275	broad.mit.edu	37	chr18	61260372	61260372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgagataggttttgcagGgttggaagggcaagcccagg	16	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61260372	T	T	61260372	1	4	61	0	1	0	0	0	0	0	0	0	14213	1247	43	2		2	SERPINB13	18	61260372	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29019	61260372	16816876	6176	74421											
SERPINB13	5275	broad.mit.edu	37	chr18	61264337	61264337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggctgccatggggatgGgcgatgccttcagtgagcac	15	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61264337	A	A	61264337	3	1	61	1	0	0	0	0	1	0	0	0	14213	1232	43	4	942	4	SERPINB13	18	61264337	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3965	61264337	16812911	6177	74422											
SERPINB4	6318	broad.mit.edu	37	chr18	61306602	61306602	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaatgtgtccaacaaaTaacacgtgaaacacaagaca	5	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61306602	A	A	61306602	1	1	61	0	1	0	0	0	0	0	0	0	14216	1421	49	5		5	SERPINB4	18	61306602	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	42265	61306602	16770646	6178	74423											
SERPINB4	6318	broad.mit.edu	37	chr18	61308221	61308221	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcttgatggcatctaaaTattcctttgagatatgaagg	8	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61308221	C	C	61308221	3	2	61	1	0	0	0	0	1	0	0	0	14216	1406	49	5	832	5	SERPINB4	18	61308221	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1619	61308221	16769027	6179	74424											
SERPINB4	6318	broad.mit.edu	37	chr18	61310995	61310995	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatctttctacaatgtgcaTatattaaatatattaatgtc	3	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61310995	C	C	61310995	1	2	61	0	1	0	0	0	0	0	0	0	14216	1421	49	5		5	SERPINB4	18	61310995	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2774	61310995	16766253	6180	74425											
SERPINB11	89778	broad.mit.edu	37	chr18	61379924	61379924	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaagacgatggcatttcaTcaggtaagtccatttggaag	10	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61379924	C	C	61379924	2	2	61	1	0	0	0	0	0	0	0	1	14211	1432	50	5		5	SERPINB11	18	61379924	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	68929	61379924	16697324	6181	74426											
SERPINB11	89778	broad.mit.edu	37	chr18	61380053	61380053	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagattgactttgtgctaacTtacagtttcagtgaaatgga	10	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61380053	A	A	61380053	1	1	61	0	1	0	0	0	0	0	0	0	14211	1624	56	5		5	SERPINB11	18	61380053	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	129	61380053	16697195	6182	74427											
SERPINB10	5273	broad.mit.edu	37	chr18	61600227	61600227	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagaattaaggagttggtgGaatacttcttcaatgacctt	10	5	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61600227	A	A	61600227	1	1	61	0	1	0	0	0	0	0	0	0	14210	1189	41	4		4	SERPINB10	18	61600227	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	220174	61600227	16477021	6183	74428											
CDH7	1005	broad.mit.edu	37	chr18	63476886	63476886	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattatttttacatatctcCatatcactgactctcttgta	3	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63476886	T	T	63476886	1	4	61	0	1	0	0	0	0	0	0	0	3145	609	21	4		4	CDH7	18	63476886	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1876659	63476886	14600362	6184	74429											
CDH7	1005	broad.mit.edu	37	chr18	63489524	63489524	+	Intron	DEL	C	-	-													gacacaagtgcaataactttCcctgaaagtctataaaatac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63489524	-	-	63489524	6	5	61	0	1	1	0	1	0	0	0	0	3145	870	30	0		0	CDH7	18	63489524	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	12638	63489524	14587724	6185	74430											
CDH7	1005	broad.mit.edu	37	chr18	63526210	63526210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccatcactatacttgaCatcaatgataacgcccctga	7	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63526210	A	A	63526210	3	1	61	1	0	0	0	0	1	0	0	0	3145	477	17	3	1452	3	CDH7	18	63526210	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36686	63526210	14551038	6186	74431											
CCDC102B	79839	broad.mit.edu	37	chr18	66564821	66564821	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttgcccactaggatgtaAaataacgttcatgcatctga	7	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66564821	G	G	66564821	1	3	61	0	1	0	0	0	0	0	0	0	2763	29	1	5		5	CCDC102B	18	66564821	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3038611	66564821	11512427	6187	74432											
DOK6	220164	broad.mit.edu	37	chr18	67085034	67085034	+	Intron	DEL	C	-	-													tgtggtttctatttgcatttCccaaatgattagtgatgttg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67085034	-	-	67085034	6	5	61	0	1	1	0	1	0	0	0	0	4741	870	30	0		0	DOK6	18	67085034	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	520213	67085034	10992214	6188	74433											
CD226	10666	broad.mit.edu	37	chr18	67592967	67592967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcactccagtctcgctcCcatatgaacgacagtccacg	6	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67592967	A	A	67592967	1	1	61	0	1	0	0	0	0	0	0	0	3016	638	22	2		2	CD226	18	67592967	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	507933	67592967	10484281	6189	74434											
RTTN	25914	broad.mit.edu	37	chr18	67697404	67697404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccaagtaagttataacCacatataccaatcagattct	3	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67697404	A	A	67697404	1	1	61	0	1	0	0	0	0	0	0	0	13848	609	21	2		2	RTTN	18	67697404	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104437	67697404	10379844	6190	74435											
NETO1	81832	broad.mit.edu	37	chr18	70450810	70450810	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaacatattagagaataGcctgctgtgctcactgtgtg	9	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70450810	A	A	70450810	1	1	61	0	1	0	0	0	0	0	0	0	10434	986	34	4		4	NETO1	18	70450810	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2753406	70450810	7626438	6191	74436											
NETO1	81832	broad.mit.edu	37	chr18	70498486	70498486	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactaacacatctgattccaCagaccacatcttctaacaat	3	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70498486	G	G	70498486	1	3	61	0	1	0	0	0	0	0	0	0	10434	493	17	4		4	NETO1	18	70498486	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	47676	70498486	7578762	6192	74437											
FBXO15	201456	broad.mit.edu	37	chr18	71741089	71741089	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaaaatccagaatactatCattggtttttcatggcctac	5	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71741089	A	A	71741089	1	1	61	0	1	0	0	0	0	0	0	0	5785	841	29	3		3	FBXO15	18	71741089	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1242603	71741089	6336159	6193	74438											
CNDP1	84735	broad.mit.edu	37	chr18	72226588	72226588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgggtggccatcgagagcGactctgtccagcctgtgcct	14	12	1	1	rs142534952		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72226588	T	T	72226588	3	4	61	1	0	0	0	0	1	0	0	0	3625	1058	37	3	194	3	CNDP1	18	72226588	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	485499	72226588	5850660	6194	74439											
CNDP1	84735	broad.mit.edu	37	chr18	72226763	72226763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctagacgtcagtcatgCcttcccgggggtggcaaggg	14	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72226763	A	A	72226763	1	1	61	0	1	0	0	0	0	0	0	0	3625	754	26	3		3	CNDP1	18	72226763	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	175	72226763	5850485	6195	74440											
ZNF407	55628	broad.mit.edu	37	chr18	72338181	72338181	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgatatcaagtgttggtgaGggtgtgggccaaacagaatt	14	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72338181	C	C	72338181	1	2	61	0	1	0	0	0	0	0	0	0	18014	1015	35	4		4	ZNF407	18	72338181	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	111418	72338181	5739067	6196	74441											
ZNF407	55628	broad.mit.edu	37	chr18	72345693	72345693	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaagaaacataaaggacgGgtagaaatagaagcaagtgg	12	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72345693	T	T	72345693	2	4	61	1	0	0	0	0	0	0	0	1	18014	1219	43	2		2	ZNF407	18	72345693	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7512	72345693	5731555	6197	74442											
ZNF516	9658	broad.mit.edu	37	chr18	74154036	74154036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggccggcgacgatcacCtcctcctggaccacgttgtt	10	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74154036	A	A	74154036	3	1	61	1	0	0	0	0	1	0	0	0	18087	680	24	2	2537	2	ZNF516	18	74154036	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1808343	74154036	3923212	6198	74443											
ZNF236	7776	broad.mit.edu	37	chr18	74585794	74585794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctcctgtccccacgtagGcagtgctgtgactgggccac	11	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74585794	T	T	74585794	1	4	61	0	1	0	0	0	0	0	0	0	17915	1218	42	3		3	ZNF236	18	74585794	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	431758	74585794	3491454	6199	74444											
ZNF236	7776	broad.mit.edu	37	chr18	74597644	74597644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatacctgtgtcttaggcttGgctgtaatctgcttgataaa	10	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74597644	T	T	74597644	1	4	61	0	1	0	0	0	0	0	0	0	17915	1363	47	2		2	ZNF236	18	74597644	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11850	74597644	3479604	6200	74445											
ATP9B	374868	broad.mit.edu	37	chr18	76906392	76906392	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagccggcggtgtggagagtGactgaaggtgcaggctgcat	19	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76906392	T	T	76906392	1	4	61	0	1	0	0	0	0	0	0	0	1203	1305	45	3		3	ATP9B	18	76906392	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2308748	76906392	1170856	6201	74446											
PPAP2C	8612	broad.mit.edu	37	chr19	282141	282141	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttagaagctcacagtgaggGcagccaccagtgccccctgc	12	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	282141	A	A	282141	3	1	61	1	0	0	0	0	1	0	0	0	12388	1203	42	4	164	4	PPAP2C	19	282141	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08		282141	58846842	6202	74447											
PCSK4	54760	broad.mit.edu	37	chr19	1486857	1486857	+	Frame_Shift_Del	DEL	G	-	-													ggcggctgcactcacgatctGggggtcggtggccacgccgc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1486857	-	-	1486857	7	5	61	1	0	1	0	1	0	0	0	0	11696	1357	47	0	1236	0	PCSK4	19	1486857	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	1204716	1486857	57642126	6203	74448											
SCAMP4	113178	broad.mit.edu	37	chr19	1917810	1917810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgaagaggatctaccGgctgtggatgtgtgagtgcg	17	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1917810	T	T	1917810	3	4	61	1	0	0	0	0	1	0	0	0	13985	1116	39	1	131	1	SCAMP4	19	1917810	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	430953	1917810	57211173	6204	74449											
AP3D1	8943	broad.mit.edu	37	chr19	2115419	2115419	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatctgacataggcagcccTgcgggccggcagcgggcagc	16	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2115419	A	A	2115419	5	1	61	1	0	0	0	0	0	0	1	0	748	1594	55	5	1515	5	AP3D1	19	2115419	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	197609	2115419	57013564	6205	74450											
TMPRSS9	360200	broad.mit.edu	37	chr19	2408556	2408556	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagcccgtgtgcctcccgGctgccacacacatcttccca	7	20	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2408556	A	A	2408556	3	1	61	1	0	0	0	0	1	0	0	0	16376	1203	42	4	969	4	TMPRSS9	19	2408556	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	293137	2408556	56720427	6206	74451											
GNG7	2788	broad.mit.edu	37	chr19	2560117	2560117	+	Intron	DEL	T	-	-													acgtccatgactctaatttcTtgtctctctctgcgtgtcca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2560117	-	-	2560117	6	5	61	0	1	1	0	1	0	0	0	0	6595	1624	56	0		0	GNG7	19	2560117	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	151561	2560117	56568866	6207	74452											
ZNF556	80032	broad.mit.edu	37	chr19	2877559	2877559	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaactcacagtggagagaaAccctatgcctgtcaatcttg	8	10	3	1	rs144140574		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2877559	C	C	2877559	3	2	61	1	0	0	0	0	1	0	0	0	18114	40	2	5	617	5	ZNF556	19	2877559	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	317442	2877559	56251424	6208	74453											
CCDC94	55702	broad.mit.edu	37	chr19	4251212	4251212	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggtccctctcccccagcacAcctcagatcagggcgggccc	10	20	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4251212	T	T	4251212	1	4	61	0	1	0	0	0	0	0	0	0	2901	174	6	5		5	CCDC94	19	4251212	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1373653	4251212	54877771	6209	74454											
SHD	56961	broad.mit.edu	37	chr19	4283231	4283231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaccacatctccagggCgtttgcaggtgcttctcaga	11	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4283231	A	A	4283231	3	1	61	1	0	0	0	0	1	0	0	0	14388	768	27	3	594	3	SHD	19	4283231	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	32019	4283231	54845752	6210	74455											
TMIGD2	126259	broad.mit.edu	37	chr19	4297889	4297889	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtttgatatgaagaattTagagttttttgtttctagga	9	1	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4297889	C	C	4297889	1	2	61	0	1	0	0	0	0	0	0	0	16354	1769	61	5		5	TMIGD2	19	4297889	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	14658	4297889	54831094	6211	74456											
STAP2	55620	broad.mit.edu	37	chr19	4331980	4331980	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggctttttgaggagatctgGagaatgggagagagggcgca	18	4	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4331980	C	C	4331980	1	2	61	0	1	0	0	0	0	0	0	0	15371	1189	41	4		4	STAP2	19	4331980	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34091	4331980	54797003	6212	74457											
KDM4B	23030	broad.mit.edu	37	chr19	5071113	5071113	+	Intron	DEL	G	-	-													ccagggacctgggaccaggtGggaggggcctgtgggtgggg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5071113	-	-	5071113	6	5	61	0	1	1	0	1	0	0	0	0	8199	1363	47	0		0	KDM4B	19	5071113	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	739133	5071113	54057870	6213	74458											
PTPRS	5802	broad.mit.edu	37	chr19	5207892	5207892	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcttaggggcagtcgggGcgtgaggccaggctgcctcc	19	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5207892	C	C	5207892	1	2	61	0	1	0	0	0	0	0	0	0	12919	1218	42	4		4	PTPRS	19	5207892	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	136779	5207892	53921091	6214	74459											
PTPRS	5802	broad.mit.edu	37	chr19	5239041	5239041	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcttcaggtcctccaccaCgtaggaagtcgtcgggtcga	14	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5239041	T	T	5239041	3	4	61	1	0	0	0	0	1	0	0	0	12919	536	19	4	4212	4	PTPRS	19	5239041	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31149	5239041	53889942	6215	74460											
FUT6	2528	broad.mit.edu	37	chr19	5831811	5831811	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgttcctccacagcttctcGgtgatgtagtcggggtgcaa	13	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5831811	A	A	5831811	2	1	61	1	0	0	0	0	0	0	0	1	6168	1103	39	4		4	FUT6	19	5831811	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	592770	5831811	53297172	6216	74461											
FUT6	2528	broad.mit.edu	37	chr19	5832192	5832192	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctgaaccagatccatcgCtgcccctgccgcctcgggga	11	16	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5832192	T	T	5832192	2	4	61	1	0	0	0	0	0	0	0	1	6168	796	28	4		4	FUT6	19	5832192	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	381	5832192	53296791	6217	74462											
RFX2	5990	broad.mit.edu	37	chr19	6026250	6026250	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcaatcgccatttcaagcTaaagaaaatgtgtgcagaaa	7	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6026250	A	A	6026250	5	1	61	1	0	0	0	0	0	0	1	0	13371	1536	53	5	1702	5	RFX2	19	6026250	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	194058	6026250	53102733	6218	74463											
ACSBG2	81616	broad.mit.edu	37	chr19	6187495	6187495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttgggttccctggcccCaccccagggtcaagaggatg	14	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6187495	T	T	6187495	1	4	61	0	1	0	0	0	0	0	0	0	174	609	21	4		4	ACSBG2	19	6187495	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	161245	6187495	52941488	6219	74464											
CD70	970	broad.mit.edu	37	chr19	6591093	6591093	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggaaggaaggaaactgCagccccctcccggggctcct	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6591093	T	T	6591093	1	4	61	0	1	0	0	0	0	0	0	0	3063	725	25	4		4	CD70	19	6591093	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	403598	6591093	52537890	6220	74465											
VAV1	7409	broad.mit.edu	37	chr19	6793016	6793016	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggttccagtcacagctgtGggatcttgggcaagttatca	12	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6793016	C	C	6793016	1	2	61	0	1	0	0	0	0	0	0	0	17258	1363	47	4		4	VAV1	19	6793016	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	201923	6793016	52335967	6221	74466											
EMR1	2015	broad.mit.edu	37	chr19	6894707	6894707	+	Intron	DEL	G	-	-													tataggcaaggggtggaggtGggagatcaaatgtgcattca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6894707	-	-	6894707	6	5	61	0	1	1	0	1	0	0	0	0	5146	1363	47	0		0	EMR1	19	6894707	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	101691	6894707	52234276	6222	74467											
EMR1	2015	broad.mit.edu	37	chr19	6898657	6898657	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgactgtgtcaactccaTgggaagctacaattgcagct	9	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6898657	C	C	6898657	1	2	61	0	1	0	0	0	0	0	0	0	5146	1479	51	5		5	EMR1	19	6898657	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3950	6898657	52230326	6223	74468											
C19orf59	199675	broad.mit.edu	37	chr19	7743311	7743311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggagggtctgagggagacCcgtggggtcatggtgggggt	23	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7743311	A	A	7743311	1	1	61	0	1	0	0	0	0	0	0	0	1959	638	22	2		2	C19orf59	19	7743311	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	844654	7743311	51385672	6224	74469											
CD209	30835	broad.mit.edu	37	chr19	7809108	7809109	+	Intron	DNP	GG	CT	CT													ctgcagctgtaggaagttctGgagggtacaggaggagtcag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	7809109	CT	CT	7809108	1	2	61	0	1	0	0	0	0	0	0	0	3014	1363	47	4		4	CD209	19	7809108	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	65797	7809108	51319875	6225	74470											
LASS4	79603	broad.mit.edu	37	chr19	8321918	8321918	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacctgctgcgcattggctCtctggtgctgctgttacacg	11	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8321918	G	G	8321918	3	3	61	1	0	0	0	0	1	0	0	0	8713	913	32	4	724	4	LASS4	19	8321918	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	512810	8321918	50807065	6226	74471											
MARCH2	51257	broad.mit.edu	37	chr19	8503531	8503531	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacacttccacttcaacagtTcccgcacggcctgaacgctt	6	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8503531	G	G	8503531	1	3	61	0	1	0	0	0	0	0	0	0	9393	1798	62	5		5	MARCH2	19	8503531	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	181613	8503531	50625452	6227	74472											
HNRNPM	4670	broad.mit.edu	37	chr19	8551153	8551153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctggccatgggtggcgGtggcggtgccagctttgacc	19	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8551153	T	T	8551153	3	4	61	1	0	0	0	0	1	0	0	0	7338	1261	44	3	1895	3	HNRNPM	19	8551153	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	47622	8551153	50577830	6228	74473											
MYO1F	4542	broad.mit.edu	37	chr19	8594953	8594953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatatgggccaggtgaggGtgtacctgtgatggaacaga	16	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8594953	T	T	8594953	1	4	61	0	1	0	0	0	0	0	0	0	10167	1276	44	3		3	MYO1F	19	8594953	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43800	8594953	50534030	6229	74474											
ADAMTS10	81794	broad.mit.edu	37	chr19	8654053	8654053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttagtgatctcagctactGcactgggatcagttccacct	9	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8654053	T	T	8654053	1	4	61	0	1	0	0	0	0	0	0	0	256	1334	46	3		3	ADAMTS10	19	8654053	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	59100	8654053	50474930	6230	74475											
ADAMTS10	81794	broad.mit.edu	37	chr19	8668562	8668562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagacactgctgcctcaaGggaaagatactgtgtagccc	10	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8668562	T	T	8668562	1	4	61	0	1	0	0	0	0	0	0	0	256	1015	35	2		2	ADAMTS10	19	8668562	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14509	8668562	50460421	6231	74476											
MUC16	94025	broad.mit.edu	37	chr19	8966620	8966620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaagtgggagcttccaCctcagtcccaatgacccagg	12	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8966620	A	A	8966620	1	1	61	0	1	0	0	0	0	0	0	0	10067	522	18	3		3	MUC16	19	8966620	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	298058	8966620	50162363	6232	74477											
MUC16	94025	broad.mit.edu	37	chr19	8992982	8992982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggtgtataattggggctActggagcatcggttgaatac	13	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8992982	G	G	8992982	1	3	61	0	1	0	0	0	0	0	0	0	10067	406	14	5		5	MUC16	19	8992982	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	26362	8992982	50136001	6233	74478											
MUC16	94025	broad.mit.edu	37	chr19	9002505	9002505	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcaaagttgctcaccattGacatagagactgtgcctgtc	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9002505	T	T	9002505	2	4	61	1	0	0	0	0	0	0	0	1	10067	1277	45	3		3	MUC16	19	9002505	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9523	9002505	50126478	6234	74479											
MUC16	94025	broad.mit.edu	37	chr19	9007032	9007032	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttaacaccaccttcattTtcaacatcaccatgattgtc	3	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9007032	G	G	9007032	1	3	61	0	1	0	0	0	0	0	0	0	10067	1856	64	5		5	MUC16	19	9007032	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4527	9007032	50121951	6235	74480											
MUC16	94025	broad.mit.edu	37	chr19	9021495	9021495	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaccaccatgataatccccAtcatgaccaccacaaacatc	2	17	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9021495	T	T	9021495	1	4	61	0	1	0	0	0	0	0	0	0	10067	232	8	5		5	MUC16	19	9021495	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	14463	9021495	50107488	6236	74481											
MUC16	94025	broad.mit.edu	37	chr19	9064622	9064622	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcaggacagaggaggcAgaaatcctggggatggttcc	15	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9064622	T	T	9064622	2	4	61	1	0	0	0	0	0	0	0	1	10067	175	7	5		5	MUC16	19	9064622	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	43127	9064622	50064361	6237	74482											
MUC16	94025	broad.mit.edu	37	chr19	9069244	9069244	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaggggatgttgagtctcTgtcaacatttttagtctcag	11	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9069244	C	C	9069244	3	2	61	1	0	0	0	0	1	0	0	0	10067	1588	55	5	25649	5	MUC16	19	9069244	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	4622	9069244	50059739	6238	74483											
MUC16	94025	broad.mit.edu	37	chr19	9070919	9070919	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagcacctgtgggcacataAgaaaaggcagtatttgtctc	10	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9070919	C	C	9070919	2	2	61	1	0	0	0	0	0	0	0	1	10067	59	3	5		5	MUC16	19	9070919	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1675	9070919	50058064	6239	74484											
OR7G2	390882	broad.mit.edu	37	chr19	9213144	9213144	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaccacagaactaatgTacacccccaaacctgcccca	4	17	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9213144	A	A	9213144	3	1	61	1	0	0	0	0	1	0	0	0	11317	1638	57	5	200	5	OR7G2	19	9213144	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	142225	9213144	49915839	6240	74485											
COL5A3	50509	broad.mit.edu	37	chr19	10071663	10071664	+	Intron	INS	-	C	C													atccactggcagacaagccaINSccccccccatgtcaccatct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10071664	C	C	10071663	6	5	61	0	1	1	1	0	0	0	0	0	3730	174	6	0		0	COL5A3	19	10071663	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	858519	10071663	49057320	6241	74486											
COL5A3	50509	broad.mit.edu	37	chr19	10084199	10084199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagatgcccaggggtcaGgggttccctgagttgggtgc	16	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10084199	T	T	10084199	1	4	61	0	1	0	0	0	0	0	0	0	3730	1015	35	2		2	COL5A3	19	10084199	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	12536	10084199	49044784	6242	74487											
COL5A3	50509	broad.mit.edu	37	chr19	10087928	10087928	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctcctttatcgcctttacTccccttgtgtccgggggcac	9	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10087928	A	A	10087928	3	1	61	1	0	0	0	0	1	0	0	0	3730	1551	54	5	2068	5	COL5A3	19	10087928	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3729	10087928	49041055	6243	74488											
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10218214	10218214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgctgaaggactgcgtgGcagtggctgggcccctcggg	17	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10218214	T	T	10218214	3	4	61	1	0	0	0	0	1	0	0	0	12385	1203	42	3	233	3	PPAN-P2RY11	19	10218214	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	130286	10218214	48910769	6244	74489											
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10218681	10218681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctcactgcgccggcaCcgcatgcacgagcagcagtt	11	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10218681	A	A	10218681	3	1	61	1	0	0	0	0	1	0	0	0	12385	506	18	3	402	3	PPAN-P2RY11	19	10218681	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	467	10218681	48910302	6245	74490											
PDE4A	5141	broad.mit.edu	37	chr19	10559756	10559756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccgctccccatcccagGtgctggccagcctccggagc	11	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10559756	T	T	10559756	3	4	61	1	0	0	0	0	1	0	0	0	11733	1275	44	3	951	3	PDE4A	19	10559756	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	341075	10559756	48569227	6246	74491											
SLC44A2	57153	broad.mit.edu	37	chr19	10753919	10753919	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcccctgcccgtgggctcCcctcatgcctcctgctctgg	11	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10753919	T	T	10753919	1	4	61	0	1	0	0	0	0	0	0	0	14750	638	22	4		4	SLC44A2	19	10753919	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	194163	10753919	48375064	6247	74492											
C19orf52	90580	broad.mit.edu	37	chr19	11040235	11040235	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaccaacgagcggctcttcGatgagaagtacaagcctgtc	11	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11040235	C	C	11040235	3	2	61	1	0	0	0	0	1	0	0	0	1953	1058	37	4	646	4	C19orf52	19	11040235	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	286316	11040235	48088748	6248	74493											
EPOR	2057	broad.mit.edu	37	chr19	11493829	11493829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccagcgctcgccgcttcCtcccagaaacacaccaagtc	6	20	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11493829	A	A	11493829	3	1	61	1	0	0	0	0	1	0	0	0	5231	680	24	2	1359	2	EPOR	19	11493829	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	453594	11493829	47635154	6249	74494											
CCDC151	115948	broad.mit.edu	37	chr19	11541569	11541569	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccacttccattcgcgaaTcactgcctggaccactttct	5	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11541569	A	A	11541569	3	1	61	1	0	0	0	0	1	0	0	0	2812	1435	50	5	1437	5	CCDC151	19	11541569	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	47740	11541569	47587414	6250	74495											
CNN1	1264	broad.mit.edu	37	chr19	11657608	11657608	+	Intron	DEL	C	-	-													cccgcaagcccctcagacctCccctccccacccagtgacca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11657608	-	-	11657608	6	5	61	0	1	1	0	1	0	0	0	0	3641	870	30	0		0	CNN1	19	11657608	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	116039	11657608	47471375	6251	74496											
ZNF69	7620	broad.mit.edu	37	chr19	12015049	12015049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaccacatatcaacaacaGcaaaaaattagctgggcatt	7	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12015049	T	T	12015049	1	4	61	0	1	0	0	0	0	0	0	0	18222	986	34	3		3	ZNF69	19	12015049	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	357441	12015049	47113934	6252	74497											
NFIX	4784	broad.mit.edu	37	chr19	13139658	13139658	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggccgagctggcctagaaCcgctgctagactatctccaa	10	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13139658	T	T	13139658	1	4	61	0	1	0	0	0	0	0	0	0	10469	522	18	4		4	NFIX	19	13139658	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1124609	13139658	45989325	6253	74498											
CACNA1A	773	broad.mit.edu	37	chr19	13373748	13373748	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaccctaccctcccaggCctagaagtctggggtgagct	13	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13373748	A	A	13373748	1	1	61	0	1	0	0	0	0	0	0	0	2564	754	26	3		3	CACNA1A	19	13373748	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	234090	13373748	45755235	6254	74499											
CACNA1A	773	broad.mit.edu	37	chr19	13419011	13419011	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacaacaggctgatgatGgacttcatggagttgaggag	14	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13419011	T	T	13419011	2	4	61	1	0	0	0	0	0	0	0	1	2564	1335	47	2		2	CACNA1A	19	13419011	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45263	13419011	45709972	6255	74500											
CACNA1A	773	broad.mit.edu	37	chr19	13603864	13603864	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggaaggagagagaagggGaggccgccgcagttttcatt	18	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13603864	T	T	13603864	1	4	61	0	1	0	0	0	0	0	0	0	2564	1189	41	3		3	CACNA1A	19	13603864	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	184853	13603864	45525119	6256	74501											
CACNA1A	773	broad.mit.edu	37	chr19	13606628	13606628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcatccatatttttacccCtcaatccagtctagtcatct	3	13	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13606628	A	A	13606628	1	1	61	0	1	0	0	0	0	0	0	0	2564	696	24	2		2	CACNA1A	19	13606628	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2764	13606628	45522355	6257	74502											
CC2D1A	54862	broad.mit.edu	37	chr19	14034455	14034455	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccagacacttgcacccCcagccacccatccccagggc	8	20	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14034455	T	T	14034455	1	4	61	0	1	0	0	0	0	0	0	0	2752	638	22	4		4	CC2D1A	19	14034455	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	427827	14034455	45094528	6258	74503											
CD97	976	broad.mit.edu	37	chr19	14515372	14515372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttatggctcattatgacgtgGaggtaagtagctggaggcat	14	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14515372	A	A	14515372	3	1	61	1	0	0	0	0	1	0	0	0	3079	1175	41	4	1677	4	CD97	19	14515372	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	480917	14515372	44613611	6259	74504											
CLEC17A	388512	broad.mit.edu	37	chr19	14707557	14707557	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctccctaaccctctcttgCtgacttcatctgctgaaaca	4	16	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14707557	G	G	14707557	1	3	61	0	1	0	0	0	0	0	0	0	3533	812	28	4		4	CLEC17A	19	14707557	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	192185	14707557	44421426	6260	74505											
OR7C1	26664	broad.mit.edu	37	chr19	14910548	14910548	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagctgggggttcatgatgAccgtatagtgcagggggtga	18	5	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14910548	C	C	14910548	3	2	61	1	0	0	0	0	1	0	0	0	11311	275	10	5	563	5	OR7C1	19	14910548	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	202991	14910548	44218435	6261	74506											
OR7A5	26659	broad.mit.edu	37	chr19	14938364	14938364	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttgtacttcccctgagcTgatgagattgcatgtatgga	11	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14938364	C	C	14938364	2	2	61	1	0	0	0	0	0	0	0	1	11310	1567	55	5		5	OR7A5	19	14938364	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	27816	14938364	44190619	6262	74507											
OR7C2	26658	broad.mit.edu	37	chr19	15052238	15052238	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtcattctggggaatgcTtatttggagtaaattttgtg	12	4	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15052238	G	G	15052238	1	3	61	0	1	0	0	0	0	0	0	0	11312	1624	56	5		5	OR7C2	19	15052238	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	113874	15052238	44076745	6263	74508											
SLC1A6	6511	broad.mit.edu	37	chr19	15073180	15073180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatagagagagattgcgcCcagattcaattcagcggatg	12	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15073180	A	A	15073180	1	1	61	0	1	0	0	0	0	0	0	0	14549	638	22	2		2	SLC1A6	19	15073180	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20942	15073180	44055803	6264	74509											
CCDC105	126402	broad.mit.edu	37	chr19	15131385	15131385	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagcaggccagacgccactCatgggtgaacctctcccgag	13	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15131385	A	A	15131385	4	1	61	1	0	0	0	0	0	1	0	0	2766	838	29	3	798	3	CCDC105	19	15131385	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	58205	15131385	43997598	6265	74510											
OR1I1	126370	broad.mit.edu	37	chr19	15198808	15198808	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcggcaaagtggccgtccCctgtcctaggccagaacagt	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15198808	T	T	15198808	3	4	61	1	0	0	0	0	1	0	0	0	11052	623	22	4	934	4	OR1I1	19	15198808	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	67423	15198808	43930175	6266	74511											
NOTCH3	4854	broad.mit.edu	37	chr19	15300051	15300051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctctcccctctttccCagcccattcacagacgatgg	5	20	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15300051	A	A	15300051	1	1	61	0	1	0	0	0	0	0	0	0	10645	609	21	2		2	NOTCH3	19	15300051	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	101243	15300051	43828932	6267	74512											
BRD4	23476	broad.mit.edu	37	chr19	15383965	15383965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaaggaagagaagagcCcccgtgagatatcagtcagc	11	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15383965	A	A	15383965	1	1	61	0	1	0	0	0	0	0	0	0	1513	638	22	2		2	BRD4	19	15383965	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83914	15383965	43745018	6268	74513											
WIZ	58525	broad.mit.edu	37	chr19	15559178	15559178	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcggggcattgtgggCctggggatagagagaaggaa	19	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15559178	T	T	15559178	1	4	61	0	1	0	0	0	0	0	0	0	17502	753	26	4		4	WIZ	19	15559178	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	175213	15559178	43569805	6269	74514											
CYP4F22	126410	broad.mit.edu	37	chr19	15640433	15640433	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagcactattgggcttgttTtgagactacaggaggtggca	14	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15640433	G	G	15640433	1	3	61	0	1	0	0	0	0	0	0	0	4222	1856	64	5		5	CYP4F22	19	15640433	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	81255	15640433	43488550	6270	74515											
CYP4F8	11283	broad.mit.edu	37	chr19	15726377	15726377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtcctggagctccccagCccctttcctaggcctcagga	10	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15726377	A	A	15726377	1	1	61	0	1	0	0	0	0	0	0	0	4224	754	26	3		3	CYP4F8	19	15726377	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85944	15726377	43402606	6271	74516											
CYP4F3	4051	broad.mit.edu	37	chr19	15760797	15760797	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacaccagcagatcctccTgtacatagacttcctgtatt	6	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15760797	A	A	15760797	3	1	61	1	0	0	0	0	1	0	0	0	4223	1580	55	5	744	5	CYP4F3	19	15760797	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	34420	15760797	43368186	6272	74517											
CYP4F3	4051	broad.mit.edu	37	chr19	15764686	15764686	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagatggtagcaggggcTggctgtggaagccttgggga	20	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15764686	A	A	15764686	1	1	61	0	1	0	0	0	0	0	0	0	4223	1595	55	5		5	CYP4F3	19	15764686	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3889	15764686	43364297	6273	74518											
OR10H2	26538	broad.mit.edu	37	chr19	15839235	15839235	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgctacgtggccatctgcCaccccctgcgctacaacgtg	9	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15839235	G	G	15839235	3	3	61	1	0	0	0	0	1	0	0	0	11000	594	21	4	384	4	OR10H2	19	15839235	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	74549	15839235	43289748	6274	74519											
OR10H5	284433	broad.mit.edu	37	chr19	15905496	15905496	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccctgctgggctgttttcTcctcatcctcctctcctatg	8	16	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15905496	G	G	15905496	3	3	61	1	0	0	0	0	1	0	0	0	11003	1551	54	5	640	5	OR10H5	19	15905496	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	66261	15905496	43223487	6275	74520											
CYP4F2	8529	broad.mit.edu	37	chr19	15995803	15995807	+	Intron	DEL	CCAGC	-	-													tttccccaaggcttccacagCcagcccctgctaccatctcc					rs75726977	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15995807	-	-	15995803	6	5	61	0	1	1	0	1	0	0	0	0	4221	754	26	0		0	CYP4F2	19	15995803	Intron	DEL	CCAGC	TCGA-17-Z031-01A-01W-0746-08	90307	15995803	43133180	6276	74521											
CYP4F11	57834	broad.mit.edu	37	chr19	16025117	16025117	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacaggccatccttacctGggccctgccgagaagggaat	12	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16025117	A	A	16025117	2	1	61	1	0	0	0	0	0	0	0	1	4219	1335	47	4		4	CYP4F11	19	16025117	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	29314	16025117	43103866	6277	74522											
OR10H4	126541	broad.mit.edu	37	chr19	16059890	16059890	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccttcccccagcacctcCtgcccatcttgttcctgctg	6	20	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16059890	T	T	16059890	2	4	61	1	0	0	0	0	0	0	0	1	11002	680	24	4		4	OR10H4	19	16059890	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34773	16059890	43069093	6278	74523											
TPM4	7171	broad.mit.edu	37	chr19	16204635	16204635	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacatccacggacagttgggGaatgtttgtggaggggctgg	17	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16204635	A	A	16204635	1	1	61	0	1	0	0	0	0	0	0	0	16532	1189	41	4		4	TPM4	19	16204635	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	144745	16204635	42924348	6279	74524											
HSH2D	84941	broad.mit.edu	37	chr19	16263858	16263858	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgtctccgcagagcccAaagcagctgctgccatttca	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16263858	G	G	16263858	3	3	61	1	0	0	0	0	1	0	0	0	7469	130	5	5	231	5	HSH2D	19	16263858	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	59223	16263858	42865125	6280	74525											
CHERP	10523	broad.mit.edu	37	chr19	16648022	16648022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagctgaggacaccctcaCtcaactcagccccccgggcc	10	19	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16648022	A	A	16648022	1	1	61	0	1	0	0	0	0	0	0	0	3367	580	20	3		3	CHERP	19	16648022	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	384164	16648022	42480961	6281	74526											
NWD1	284434	broad.mit.edu	37	chr19	16899933	16899933	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggctcaaaaaatcccgctGaacctcagatctggaacctt	8	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16899933	A	A	16899933	3	1	61	1	0	0	0	0	1	0	0	0	10876	1291	45	4	2501	4	NWD1	19	16899933	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	251911	16899933	42229050	6282	74527											
SIN3B	23309	broad.mit.edu	37	chr19	16980267	16980267	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatggccgcccttccccccAcagcaccaggagcagcactc	8	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16980267	G	G	16980267	1	3	61	0	1	0	0	0	0	0	0	0	14439	174	6	5		5	SIN3B	19	16980267	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	80334	16980267	42148716	6283	74528											
CPAMD8	27151	broad.mit.edu	37	chr19	17039981	17039981	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcacagccacatcaaagCgggtgaggcgcagtggccgc	14	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17039981	T	T	17039981	3	4	61	1	0	0	0	0	1	0	0	0	3827	768	27	4	2818	4	CPAMD8	19	17039981	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	59714	17039981	42089002	6284	74529											
CPAMD8	27151	broad.mit.edu	37	chr19	17057974	17057974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacatcttcttggtcaCatggcgtttgccaggatgcc	9	13	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17057974	A	A	17057974	3	1	61	1	0	0	0	0	1	0	0	0	3827	478	17	3	3173	3	CPAMD8	19	17057974	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17993	17057974	42071009	6285	74530											
MYO9B	4650	broad.mit.edu	37	chr19	17311040	17311040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtgtccagtcacagggaGgctgggcctcacgtccattt	12	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17311040	T	T	17311040	1	4	61	0	1	0	0	0	0	0	0	0	10179	1015	35	2		2	MYO9B	19	17311040	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	253066	17311040	41817943	6286	74531											
UNC13A	23025	broad.mit.edu	37	chr19	17750387	17750387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaggcgtggggaggatGggagactgcttttcaggggg	21	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17750387	T	T	17750387	1	4	61	0	1	0	0	0	0	0	0	0	17110	1363	47	2		2	UNC13A	19	17750387	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	439347	17750387	41378596	6287	74532											
UNC13A	23025	broad.mit.edu	37	chr19	17750470	17750470	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctcgaagcaactggggatCtgcttggatgcaccaagcac	11	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17750470	T	T	17750470	1	4	61	0	1	0	0	0	0	0	0	0	17110	928	32	4		4	UNC13A	19	17750470	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	83	17750470	41378513	6288	74533											
UNC13A	23025	broad.mit.edu	37	chr19	17756509	17756509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaccacacgtccatctcgCcgctgagcgtccgcacctca	8	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17756509	A	A	17756509	3	1	61	1	0	0	0	0	1	0	0	0	17110	739	26	3	2881	3	UNC13A	19	17756509	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6039	17756509	41372474	6289	74534											
RPL18A	6142	broad.mit.edu	37	chr19	17972898	17972898	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccctgtggcctctccttGgcaggtgtttgagaagtccc	11	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17972898	A	A	17972898	1	1	61	0	1	0	0	0	0	0	0	0	13676	1363	47	4		4	RPL18A	19	17972898	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	216389	17972898	41156085	6290	74535											
SLC5A5	6528	broad.mit.edu	37	chr19	17988772	17988772	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctgcctcttcccccaGggccctgctcatcaaccagg	10	17	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17988772	T	T	17988772	5	4	61	1	0	0	0	0	0	0	1	0	14782	1014	35	2	865	2	SLC5A5	19	17988772	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15874	17988772	41140211	6291	74536											
MAST3	23031	broad.mit.edu	37	chr19	18254702	18254703	+	Missense_Mutation	DNP	GG	TT	TT													aagtttgccttctcatcagaGgatgagggggtaggcccagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	18254703	TT	TT	18254702	3	4	61	1	0	0	0	0	1	0	0	0	9418	991	35	2	2464	2	MAST3	19	18254702	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	265930	18254702	40874281	6292	74537											
MAST3	23031	broad.mit.edu	37	chr19	18255377	18255377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccggggccgccgccttGggggcccaagagacccagcc	16	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18255377	T	T	18255377	3	4	61	1	0	0	0	0	1	0	0	0	9418	1348	47	2	2685	2	MAST3	19	18255377	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	675	18255377	40873606	6293	74538											
GDF15	9518	broad.mit.edu	37	chr19	18497006	18497006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctgcacagccatgcccGggcaagaactcaggacggtg	12	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18497006	T	T	18497006	3	4	61	1	0	0	0	0	1	0	0	0	6377	1116	39	1	9	1	GDF15	19	18497006	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	241629	18497006	40631977	6294	74539											
HOMER3	9454	broad.mit.edu	37	chr19	19030220	19030220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccggaagcaagacacgggCacgctaggaaatgtagttta	13	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19030220	A	A	19030220	1	1	61	0	1	0	0	0	0	0	0	0	7347	725	25	3		3	HOMER3	19	19030220	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	533214	19030220	40098763	6295	74540											
TMEM161A	54929	broad.mit.edu	37	chr19	19243349	19243349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgctcagccctggggcCcagctcgctcccctcctaat	8	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19243349	A	A	19243349	1	1	61	0	1	0	0	0	0	0	0	0	16199	638	22	2		2	TMEM161A	19	19243349	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	213129	19243349	39885634	6296	74541											
MEF2B	100271849	broad.mit.edu	37	chr19	19257687	19257687	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagagggtgcaccaggcctGgggaagaggagaccccagag	18	9	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19257687	A	A	19257687	1	1	61	0	1	0	0	0	0	0	0	0	9549	1363	47	4		4	MEF2B	19	19257687	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14338	19257687	39871296	6297	74542											
LOC729991-MEF2B	4207	broad.mit.edu	37	chr19	19299571	19299571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattttacctgaggtgccCctcgctcagcctcctcacca	7	17	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19299571	A	A	19299571	1	1	61	0	1	0	0	0	0	0	0	0	8976	638	22	2		2	LOC729991-MEF2B	19	19299571	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	41884	19299571	39829412	6298	74543											
NCAN	1463	broad.mit.edu	37	chr19	19339016	19339016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaccttgagccctcagGtggccctggatacaagcatt	10	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19339016	T	T	19339016	3	4	61	1	0	0	0	0	1	0	0	0	10299	1261	44	3	2613	3	NCAN	19	19339016	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39445	19339016	39789967	6299	74544											
HAPLN4	404037	broad.mit.edu	37	chr19	19371794	19371794	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgaatgcccggtgctgGgggcctagtgccacgaagac	15	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19371794	T	T	19371794	2	4	61	1	0	0	0	0	0	0	0	1	7023	1219	43	2		2	HAPLN4	19	19371794	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	32778	19371794	39757189	6300	74545											
TM6SF2	53345	broad.mit.edu	37	chr19	19381037	19381037	+	Frame_Shift_Del	DEL	C	-	-													gaggtagtgaacagtgccatCccagtagcagatgaagactc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19381037	-	-	19381037	7	5	61	1	0	1	0	1	0	0	0	0	16096	855	30	0	815	0	TM6SF2	19	19381037	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	9243	19381037	39747946	6301	74546											
PBX4	80714	broad.mit.edu	37	chr19	19680275	19680275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgggagatggtgaggcCgcccttcctggccagctctt	13	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19680275	A	A	19680275	3	1	61	1	0	0	0	0	1	0	0	0	11589	652	23	1	389	1	PBX4	19	19680275	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	299238	19680275	39448708	6302	74547											
ATP13A1	57130	broad.mit.edu	37	chr19	19756677	19756677	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtttgggcagggcccaggCcttactttgtaattgatggc	13	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19756677	T	T	19756677	1	4	61	0	1	0	0	0	0	0	0	0	1127	754	26	4		4	ATP13A1	19	19756677	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76402	19756677	39372306	6303	74548											
ATP13A1	57130	broad.mit.edu	37	chr19	19770477	19770477	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggaagcctctgttgctctGatagtatgagaaggcgtttc	12	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19770477	A	A	19770477	4	1	61	1	0	0	0	0	0	1	0	0	1127	1299	45	4	3100	4	ATP13A1	19	19770477	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13800	19770477	39358506	6304	74549											
ATP13A1	57130	broad.mit.edu	37	chr19	19770519	19770519	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaggaaaggccacggggaGaaactgcttcttctccaggg	13	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19770519	C	C	19770519	3	2	61	1	0	0	0	0	1	0	0	0	1127	942	33	4	3142	4	ATP13A1	19	19770519	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42	19770519	39358464	6305	74550											
ATP13A1	57130	broad.mit.edu	37	chr19	19770556	19770556	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggcatcgtaggaatacttGatcttctggaattcgaagga	12	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19770556	C	C	19770556	3	2	61	1	0	0	0	0	1	0	0	0	1127	1280	45	4	3179	4	ATP13A1	19	19770556	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37	19770556	39358427	6306	74551											
ZNF101	94039	broad.mit.edu	37	chr19	19789937	19789937	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttaagacatgtcaattagTagaaaagcattaataaacca	5	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19789937	A	A	19789937	1	1	61	0	1	0	0	0	0	0	0	0	17840	1653	57	5		5	ZNF101	19	19789937	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19381	19789937	39339046	6307	74552											
ZNF101	94039	broad.mit.edu	37	chr19	19790269	19790269	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcccccagtagtggtgcAcggcgcacagtaacaccaac	9	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19790269	C	C	19790269	2	2	61	1	0	0	0	0	0	0	0	1	17840	146	6	5		5	ZNF101	19	19790269	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	332	19790269	39338714	6308	74553											
ZNF14	7561	broad.mit.edu	37	chr19	19824950	19824950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaatgtcctggtcttcCcacttttttcctaaaatgca	4	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19824950	A	A	19824950	3	1	61	1	0	0	0	0	1	0	0	0	17854	624	22	2	1795	2	ZNF14	19	19824950	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34681	19824950	39304033	6309	74554											
ZNF90	7643	broad.mit.edu	37	chr19	20228554	20228554	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtatttatcagaatctaGcaattgaagtaatgtgttct	7	6	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20228554	A	A	20228554	1	1	61	0	1	0	0	0	0	0	0	0	18328	986	34	4		4	ZNF90	19	20228554	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	403604	20228554	38900429	6310	74555											
ZNF430	80264	broad.mit.edu	37	chr19	21239530	21239530	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaagatatggaaaatgtgGacatgaagatttacagttaa	11	2	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21239530	C	C	21239530	3	2	61	1	0	0	0	0	1	0	0	0	18031	1174	41	4	434	4	ZNF430	19	21239530	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1010976	21239530	37889453	6311	74556											
ZNF708	7562	broad.mit.edu	37	chr19	21492212	21492212	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccaacctagtaattttctCagtaaagagaatgtaggcca	7	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21492212	A	A	21492212	1	1	61	0	1	0	0	0	0	0	0	0	18240	841	29	3		3	ZNF708	19	21492212	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	252682	21492212	37636771	6312	74557											
ZNF208	7757	broad.mit.edu	37	chr19	22155237	22155237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccatttataggctttgcCacattcttcacatttgtagg	9	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22155237	A	A	22155237	3	1	61	1	0	0	0	0	1	0	0	0	17892	594	21	2	1247	2	ZNF208	19	22155237	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	663025	22155237	36973746	6313	74558											
ZNF208	7757	broad.mit.edu	37	chr19	22156942	22156942	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccttatgtgtagtaagagtCgagaccttactaaaggcttt	10	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22156942	G	G	22156942	2	3	61	1	0	0	0	0	0	0	0	1	17892	871	31	4		4	ZNF208	19	22156942	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1705	22156942	36972041	6314	74559											
ZNF676	163223	broad.mit.edu	37	chr19	22362542	22362542	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattctcttatgttccacaAggtttgaggaccggttgaag	11	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22362542	G	G	22362542	1	3	61	0	1	0	0	0	0	0	0	0	18210	87	3	5		5	ZNF676	19	22362542	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	205600	22362542	36766441	6315	74560											
ZNF98	148198	broad.mit.edu	37	chr19	22575654	22575654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccttacactcatccatgCttttacagtattttcttaac	3	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22575654	A	A	22575654	3	1	61	1	0	0	0	0	1	0	0	0	18332	797	28	3	1339	3	ZNF98	19	22575654	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	213112	22575654	36553329	6316	74561											
ZNF492	57615	broad.mit.edu	37	chr19	22817463	22817463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcgctggcagccggacCcccgggcgtcctgtctcttc	14	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22817463	A	A	22817463	1	1	61	0	1	0	0	0	0	0	0	0	18070	638	22	2		2	ZNF492	19	22817463	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	241809	22817463	36311520	6317	74562											
ZNF492	57615	broad.mit.edu	37	chr19	22847837	22847837	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaatatgaagaatgtggcAaagcttttaaccagtcctca	7	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22847837	T	T	22847837	4	4	61	1	0	0	0	0	0	1	0	0	18070	131	5	5	1376	5	ZNF492	19	22847837	Nonsense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	30374	22847837	36281146	6318	74563											
ZNF99	7652	broad.mit.edu	37	chr19	22939747	22939747	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttaaaagctttaccacattCttcacatttgtatggtttct	4	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22939747	A	A	22939747	4	1	61	1	0	0	0	0	0	1	0	0	18333	922	32	3	536	3	ZNF99	19	22939747	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	91910	22939747	36189236	6319	74564											
ZNF99	7652	broad.mit.edu	37	chr19	22940021	22940021	+	Frame_Shift_Del	DEL	C	-	-													tcacatttgtatggtttcttCccagtataaattatcttatg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22940021	-	-	22940021	7	5	61	1	0	1	0	1	0	0	0	0	18333	842	30	0	810	0	ZNF99	19	22940021	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	274	22940021	36188962	6320	74565											
ZNF99	7652	broad.mit.edu	37	chr19	22940569	22940569	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaagagttgaggactggctAaaagctttgccacattcttc	9	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22940569	G	G	22940569	2	3	61	1	0	0	0	0	0	0	0	1	18333	359	13	5		5	ZNF99	19	22940569	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	548	22940569	36188414	6321	74566											
ZNF99	7652	broad.mit.edu	37	chr19	22941809	22941809	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgaattgctttatgtctaGtaaggtgtgaggattgctta	11	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22941809	A	A	22941809	3	1	61	1	0	0	0	0	1	0	0	0	18333	1029	36	4	2495	4	ZNF99	19	22941809	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1240	22941809	36187174	6322	74567											
ZNF91	7644	broad.mit.edu	37	chr19	23527640	23527640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgcgtcagcaagagagCggaagcaggaacagttggca	16	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23527640	A	A	23527640	1	1	61	0	1	0	0	0	0	0	0	0	18329	783	27	3		3	ZNF91	19	23527640	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	585831	23527640	35601343	6323	74568											
ZNF91	7644	broad.mit.edu	37	chr19	23545398	23545398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccttacactcatccacaCttttacaaccttttcttaac	1	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23545398	A	A	23545398	3	1	61	1	0	0	0	0	1	0	0	0	18329	565	20	3	3196	3	ZNF91	19	23545398	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	17758	23545398	35583585	6324	74569											
ZNF675	171392	broad.mit.edu	37	chr19	23836621	23836621	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttaaaagctttgccgcattCctcacatttgtagggttgct	9	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23836621	A	A	23836621	4	1	61	1	0	0	0	0	0	1	0	0	18209	864	30	3	596	3	ZNF675	19	23836621	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	291223	23836621	35292362	6325	74570											
C19orf2	8725	broad.mit.edu	37	chr19	30441308	30441308	+	Intron	DEL	A	-	-													tatctccagagtgatgtctcAatctttttagtctgtcatat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30441308	-	-	30441308	6	5	61	0	1	1	0	1	0	0	0	0	1930	145	5	0		0	C19orf2	19	30441308	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	6604687	30441308	28687675	6326	74571											
C19orf2	8725	broad.mit.edu	37	chr19	30447653	30447653	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcccagtgtaacacccttGatcatgttctgtacatgact	7	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30447653	T	T	30447653	1	4	61	0	1	0	0	0	0	0	0	0	1930	1305	45	3		3	C19orf2	19	30447653	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6345	30447653	28681330	6327	74572											
ZNF536	9745	broad.mit.edu	37	chr19	30935452	30935452	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcacacatcacggccgagtCggcccagggccagggcccca	14	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935452	T	T	30935452	3	4	61	1	0	0	0	0	1	0	0	0	18101	893	31	4	985	4	ZNF536	19	30935452	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	487799	30935452	28193531	6328	74573											
ZNF536	9745	broad.mit.edu	37	chr19	30967572	30967572	+	Intron	DEL	T	-	-													tggctcacggccgcttaggcTtggaggcagggaagctgctg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30967572	-	-	30967572	6	5	61	0	1	1	0	1	0	0	0	0	18101	1624	56	0		0	ZNF536	19	30967572	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	32120	30967572	28161411	6329	74574											
TSHZ3	57616	broad.mit.edu	37	chr19	31768309	31768309	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggagcagcctttgtcaCtcttcccttttgtcaagtct	7	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768309	A	A	31768309	3	1	61	1	0	0	0	0	1	0	0	0	16750	565	20	3	859	3	TSHZ3	19	31768309	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	800737	31768309	27360674	6330	74575											
TSHZ3	57616	broad.mit.edu	37	chr19	31787938	31787938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagtgggagcgggaggtGggaggctggaagggtgttgg	23	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31787938	T	T	31787938	1	4	61	0	1	0	0	0	0	0	0	0	16750	1363	47	2		2	TSHZ3	19	31787938	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19629	31787938	27341045	6331	74576											
DPY19L3	147991	broad.mit.edu	37	chr19	32945898	32945898	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgggaaacttttgttacaTttatttatggttttatgttt	7	3	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32945898	G	G	32945898	3	3	61	1	0	0	0	0	1	0	0	0	4782	1490	52	5	1075	5	DPY19L3	19	32945898	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1157960	32945898	26183085	6332	74577											
DPY19L3	147991	broad.mit.edu	37	chr19	32971438	32971438	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggggctgccgactccgggAcctgctggacattgccaacg	14	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32971438	G	G	32971438	3	3	61	1	0	0	0	0	1	0	0	0	4782	275	10	5	2030	5	DPY19L3	19	32971438	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	25540	32971438	26157545	6333	74578											
SLC7A9	11136	broad.mit.edu	37	chr19	33324293	33324293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttttcatgataaaaaacCgatttttataaaaagagtat	4	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33324293	A	A	33324293	1	1	61	0	1	0	0	0	0	0	0	0	14819	667	23	1		1	SLC7A9	19	33324293	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	352855	33324293	25804690	6334	74579											
RHPN2	85415	broad.mit.edu	37	chr19	33493842	33493842	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttgacgagcacgctgagCatggcagggctcatgtcgta	13	9	1	2	rs137892450		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33493842	T	T	33493842	3	4	61	1	0	0	0	0	1	0	0	0	13460	710	25	4	1267	4	RHPN2	19	33493842	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	169549	33493842	25635141	6335	74580											
WDR88	126248	broad.mit.edu	37	chr19	33628604	33628604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatttaaaattctgagtGggcacgagcacgctgtgagc	11	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33628604	T	T	33628604	3	4	61	1	0	0	0	0	1	0	0	0	17462	1348	47	2	304	2	WDR88	19	33628604	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	134762	33628604	25500379	6336	74581											
WDR88	126248	broad.mit.edu	37	chr19	33666482	33666482	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcaaggatgactgacagCcacaggcccctttgagtgac	12	11	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33666482	A	A	33666482	1	1	61	0	1	0	0	0	0	0	0	0	17462	754	26	3		3	WDR88	19	33666482	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37878	33666482	25462501	6337	74582											
LSM14A	26065	broad.mit.edu	37	chr19	34706522	34706522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtacacaaagtttcaaGgccagaaaatgagcaactca	8	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34706522	T	T	34706522	3	4	61	1	0	0	0	0	1	0	0	0	9141	1000	35	2	759	2	LSM14A	19	34706522	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1040040	34706522	24422461	6338	74583											
KIAA0355	9710	broad.mit.edu	37	chr19	34787415	34787415	+	Intron	DEL	G	-	-													atcttgggcttaacctccttGggctttacgagggccttgat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34787415	-	-	34787415	6	5	61	0	1	1	0	1	0	0	0	0	8240	1363	47	0		0	KIAA0355	19	34787415	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	80893	34787415	24341568	6339	74584											
KIAA0355	9710	broad.mit.edu	37	chr19	34832328	34832328	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaatttctgtttaaataggGagcaagctttaccctgcata	7	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34832328	T	T	34832328	4	4	61	1	0	0	0	0	0	1	0	0	8240	1188	41	3	1523	3	KIAA0355	19	34832328	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	44913	34832328	24296655	6340	74585											
GPI	2821	broad.mit.edu	37	chr19	34868636	34868636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgatgctatgtctccccGcagggacccctcatggtgac	10	15	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34868636	T	T	34868636	1	4	61	0	1	0	0	0	0	0	0	0	6676	1102	38	3		3	GPI	19	34868636	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	36308	34868636	24260347	6341	74586											
UBA2	10054	broad.mit.edu	37	chr19	34934950	34934950	+	Intron	DEL	T	-	-													taacatgtgttttttttttgTtttttttttttttttttttt					rs34669674		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34934950	-	-	34934950	6	5	61	0	1	1	0	1	0	0	0	0	16954	1740	60	0		0	UBA2	19	34934950	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	66314	34934950	24194033	6342	74587											
FXYD5	53827	broad.mit.edu	37	chr19	35657248	35657248	+	Intron	DEL	G	-	-													agtgagaactggggttgggtGggaaggacaccaagaccagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35657248	-	-	35657248	6	5	61	0	1	1	0	1	0	0	0	0	6181	1363	47	0		0	FXYD5	19	35657248	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	722298	35657248	23471735	6343	74588											
MAG	4099	broad.mit.edu	37	chr19	35791398	35791398	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggcgagcatgggctgggtCccgaggggaccggccataaa	18	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35791398	A	A	35791398	1	1	61	0	1	0	0	0	0	0	0	0	9250	870	30	3		3	MAG	19	35791398	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	134150	35791398	23337585	6344	74589											
CD22	933	broad.mit.edu	37	chr19	35832179	35832179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtcagggccaaggggaGgggaggcctggggacagcaa	21	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35832179	T	T	35832179	1	4	61	0	1	0	0	0	0	0	0	0	3015	1015	35	2		2	CD22	19	35832179	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	40781	35832179	23296804	6345	74590											
KRTDAP	388533	broad.mit.edu	37	chr19	35981352	35981352	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgggatcttcatggcgtcaAgtttggggtgctctgaggcg	16	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35981352	G	G	35981352	1	3	61	0	1	0	0	0	0	0	0	0	8652	87	3	5		5	KRTDAP	19	35981352	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	149173	35981352	23147631	6346	74591											
DMKN	93099	broad.mit.edu	37	chr19	35991573	35991573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttctccctcaccccaccCctttccacgtgctacctata	3	19	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35991573	A	A	35991573	1	1	61	0	1	0	0	0	0	0	0	0	4622	638	22	2		2	DMKN	19	35991573	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10221	35991573	23137410	6347	74592											
SBSN	374897	broad.mit.edu	37	chr19	36018907	36018907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggcaaccttgtccatgcCgtggttgagcccctggacgc	13	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36018907	A	A	36018907	3	1	61	1	0	0	0	0	1	0	0	0	13976	652	23	1	1511	1	SBSN	19	36018907	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	27334	36018907	23110076	6348	74593											
ATP4A	495	broad.mit.edu	37	chr19	36053977	36053977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttttctgcctccctcCctctctctatttctccatat	1	17	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36053977	A	A	36053977	1	1	61	0	1	0	0	0	0	0	0	0	1149	638	22	2		2	ATP4A	19	36053977	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	35070	36053977	23075006	6349	74594											
HAUS5	23354	broad.mit.edu	37	chr19	36108873	36108873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccttgatcaaaacttagGgtgccaggacctaactcttg	9	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36108873	T	T	36108873	1	4	61	0	1	0	0	0	0	0	0	0	7035	1247	43	2		2	HAUS5	19	36108873	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	54896	36108873	23020110	6350	74595											
RBM42	79171	broad.mit.edu	37	chr19	36120381	36120381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccacagttccaaaattgGtacgaggtcctgagcgctga	10	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36120381	T	T	36120381	1	4	61	0	1	0	0	0	0	0	0	0	13244	1276	44	3		3	RBM42	19	36120381	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11508	36120381	23008602	6351	74596											
ARHGAP33	115703	broad.mit.edu	37	chr19	36269543	36269543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccctgcctcatgagtgtGtcctcatccacagtgtgaaa	9	13	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36269543	T	T	36269543	1	4	61	0	1	0	0	0	0	0	0	0	884	1392	48	3		3	ARHGAP33	19	36269543	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	149162	36269543	22859440	6352	74597											
ARHGAP33	115703	broad.mit.edu	37	chr19	36271419	36271419	+	Intron	DEL	G	-	-													aggtgagtccagctgggcgcGgacaggtggggctggggtac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36271419	-	-	36271419	6	5	61	0	1	1	0	1	0	0	0	0	884	1131	39	0		0	ARHGAP33	19	36271419	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	1876	36271419	22857564	6353	74598											
ARHGAP33	115703	broad.mit.edu	37	chr19	36276318	36276318	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctctcctgcaggcagcagAcccgacaccgtcacactgag	9	18	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36276318	C	C	36276318	3	2	61	1	0	0	0	0	1	0	0	0	884	272	10	5	1949	5	ARHGAP33	19	36276318	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4899	36276318	22852665	6354	74599											
ARHGAP33	115703	broad.mit.edu	37	chr19	36276429	36276429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctacctgtgcccatgtGgagccgggaggaattggggc	18	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36276429	T	T	36276429	1	4	61	0	1	0	0	0	0	0	0	0	884	1363	47	2		2	ARHGAP33	19	36276429	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	111	36276429	22852554	6355	74600											
NPHS1	4868	broad.mit.edu	37	chr19	36333144	36333144	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgtctccagctgcagccaCcttagttaggggagtggggt	15	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36333144	G	G	36333144	3	3	61	1	0	0	0	0	1	0	0	0	10677	507	18	4	1224	4	NPHS1	19	36333144	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	56715	36333144	22795839	6356	74601											
NPHS1	4868	broad.mit.edu	37	chr19	36340063	36340063	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccattctggagacagggaCaggcctgggccagctcagga	16	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36340063	G	G	36340063	1	3	61	0	1	0	0	0	0	0	0	0	10677	493	17	4		4	NPHS1	19	36340063	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	6919	36340063	22788920	6357	74602											
KIRREL2	84063	broad.mit.edu	37	chr19	36353436	36353436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtggccggagtggccgctGccaccacaactctccttatg	11	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36353436	T	T	36353436	3	4	61	1	0	0	0	0	1	0	0	0	8396	1319	46	3	1598	3	KIRREL2	19	36353436	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13373	36353436	22775547	6358	74603											
CLIP3	25999	broad.mit.edu	37	chr19	36508196	36508196	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtccccaattaaataccAgagactgtcaccagtatata	6	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36508196	T	T	36508196	1	4	61	0	1	0	0	0	0	0	0	0	3566	203	7	5		5	CLIP3	19	36508196	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	154760	36508196	22620787	6359	74604											
WDR62	284403	broad.mit.edu	37	chr19	36590381	36590381	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggccgctgggcagagcgGgccggccaagagcccctcaa	15	16	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36590381	T	T	36590381	2	4	61	1	0	0	0	0	0	0	0	1	17440	1219	43	2		2	WDR62	19	36590381	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	82185	36590381	22538602	6360	74605											
TBCB	1155	broad.mit.edu	37	chr19	36611741	36611741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtcgaggggtgcgtggGggccagagggagtatgtgca	23	6	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36611741	T	T	36611741	1	4	61	0	1	0	0	0	0	0	0	0	15752	1247	43	2		2	TBCB	19	36611741	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	21360	36611741	22517242	6361	74606											
ZNF568	374900	broad.mit.edu	37	chr19	37482137	37482137	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggagtgggaatgcttgcaCtctgctcagaaggatttgta	13	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37482137	T	T	37482137	2	4	61	1	0	0	0	0	0	0	0	1	18126	580	20	4		4	ZNF568	19	37482137	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	870396	37482137	21646846	6362	74607											
ZNF527	84503	broad.mit.edu	37	chr19	37880419	37880419	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaacttaatcgacatcatAgaattcacactggagagaga	7	9	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37880419	G	G	37880419	3	3	61	1	0	0	0	0	1	0	0	0	18095	412	15	5	1482	5	ZNF527	19	37880419	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	398282	37880419	21248564	6363	74608											
ZFP30	22835	broad.mit.edu	37	chr19	38126701	38126701	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaactctaaaggctttcccAcattctttacattcatacgg	4	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38126701	G	G	38126701	2	3	61	1	0	0	0	0	0	0	0	1	17770	157	6	5		5	ZFP30	19	38126701	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	246282	38126701	21002282	6364	74609											
SIPA1L3	23094	broad.mit.edu	37	chr19	38621028	38621028	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacccgggaaggtattaatAgatgggagttggcaggtttt	14	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38621028	G	G	38621028	1	3	61	0	1	0	0	0	0	0	0	0	14444	435	15	5		5	SIPA1L3	19	38621028	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	494327	38621028	20507955	6365	74610											
CATSPERG	57828	broad.mit.edu	37	chr19	38857880	38857880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacacgctggaatacagcCgcctgaagaacaaacactac	7	14	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38857880	A	A	38857880	3	1	61	1	0	0	0	0	1	0	0	0	2718	652	23	1	2784	1	CATSPERG	19	38857880	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	236852	38857880	20271103	6366	74611											
GGN	199720	broad.mit.edu	37	chr19	38877024	38877024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcggctccaggaggcaggGgcccttgcttcaggacctcg	16	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38877024	T	T	38877024	3	4	61	1	0	0	0	0	1	0	0	0	6422	1232	43	2	1088	2	GGN	19	38877024	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19144	38877024	20251959	6367	74612											
SPRED3	399473	broad.mit.edu	37	chr19	38884946	38884946	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagatgttcctcaggtttggCgagctgattagatcaggaga	13	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38884946	T	T	38884946	1	4	61	0	1	0	0	0	0	0	0	0	15212	783	27	4		4	SPRED3	19	38884946	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7922	38884946	20244037	6368	74613											
RYR1	6261	broad.mit.edu	37	chr19	38960104	38960104	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcaccacctggttcagcaAaggcctgccccagtttgagc	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38960104	C	C	38960104	3	2	61	1	0	0	0	0	1	0	0	0	13879	14	1	5	3822	5	RYR1	19	38960104	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	75158	38960104	20168879	6369	74614											
RYR1	6261	broad.mit.edu	37	chr19	38980058	38980058	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagggctgctccagatgaAgttgccagagtctgtgaagt	15	7	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38980058	G	G	38980058	3	3	61	1	0	0	0	0	1	0	0	0	13879	72	3	5	5927	5	RYR1	19	38980058	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	19954	38980058	20148925	6370	74615											
RYR1	6261	broad.mit.edu	37	chr19	39018332	39018332	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagatggctctgtaccggGgcgtcccgggtcgcgaggag	19	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39018332	A	A	39018332	3	1	61	1	0	0	0	0	1	0	0	0	13879	1232	43	4	11022	4	RYR1	19	39018332	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38274	39018332	20110651	6371	74616											
RYR1	6261	broad.mit.edu	37	chr19	39019542	39019542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggacatgggggcagtgacAggaggggactctagaaaccc	17	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39019542	G	G	39019542	1	3	61	0	1	0	0	0	0	0	0	0	13879	203	7	5		5	RYR1	19	39019542	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1210	39019542	20109441	6372	74617											
RYR1	6261	broad.mit.edu	37	chr19	39034164	39034164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctcacaccctacccgccCccaccaggaatccatcagcg	5	23	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39034164	T	T	39034164	1	4	61	0	1	0	0	0	0	0	0	0	13879	638	22	4		4	RYR1	19	39034164	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14622	39034164	20094819	6373	74618											
PAPL	390928	broad.mit.edu	37	chr19	39600867	39600867	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggccctgactcccctgcCctccagaggccccatgtagg	12	17	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39600867	T	T	39600867	1	4	61	0	1	0	0	0	0	0	0	0	11521	638	22	4		4	PAPL	19	39600867	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	566703	39600867	19528116	6374	74619											
LRFN1	57622	broad.mit.edu	37	chr19	39805629	39805629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgtccaggtgcagggcCcggagggcacgcaggtcggc	18	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39805629	A	A	39805629	2	1	61	1	0	0	0	0	0	0	0	1	9024	610	22	2		2	LRFN1	19	39805629	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	204762	39805629	19323354	6375	74620											
GMFG	9535	broad.mit.edu	37	chr19	39825865	39825865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggttctcccagtctcaccCtgtacctcccagtcccaatc	5	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39825865	A	A	39825865	1	1	61	0	1	0	0	0	0	0	0	0	6554	696	24	2		2	GMFG	19	39825865	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	20236	39825865	19303118	6376	74621											
PLEKHG2	64857	broad.mit.edu	37	chr19	39914598	39914598	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacccttttgcctgagcaagGaggttcccggcatgtccagg	12	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39914598	A	A	39914598	3	1	61	1	0	0	0	0	1	0	0	0	12164	1174	41	4	2895	4	PLEKHG2	19	39914598	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	88733	39914598	19214385	6377	74622											
SUPT5H	6829	broad.mit.edu	37	chr19	39949295	39949295	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgacaagaagcaggatgctGagtaggacagagtaggggat	16	4	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39949295	T	T	39949295	1	4	61	0	1	0	0	0	0	0	0	0	15517	1305	45	3		3	SUPT5H	19	39949295	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34697	39949295	19179688	6378	74623											
SUPT5H	6829	broad.mit.edu	37	chr19	39962317	39962317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagaaactggtggagaacGggggcatgtttgtctgcaag	16	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39962317	T	T	39962317	3	4	61	1	0	0	0	0	1	0	0	0	15517	1116	39	1	1971	1	SUPT5H	19	39962317	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13022	39962317	19166666	6379	74624											
TIMM50	92609	broad.mit.edu	37	chr19	39973720	39973720	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagattccttttctgtatgtGatggggttctgcctctgaca	11	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39973720	T	T	39973720	1	4	61	0	1	0	0	0	0	0	0	0	16036	1305	45	3		3	TIMM50	19	39973720	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11403	39973720	19155263	6380	74625											
LOC400696	400696	broad.mit.edu	37	chr19	40171444	40171444	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggtactggggctgtgcTgccagcaaggtgtccccttc	14	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40171444	A	A	40171444	1	1	61	0	1	0	0	0	0	0	0	0	8959	1595	55	5		5	LOC400696	19	40171444	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	197724	40171444	18957539	6381	74626											
SPTBN4	57731	broad.mit.edu	37	chr19	41040047	41040047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccgtgcggaagaagctgGgcgagatccgccagtgctgg	16	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41040047	T	T	41040047	3	4	61	1	0	0	0	0	1	0	0	0	15239	1232	43	2	4230	2	SPTBN4	19	41040047	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	868603	41040047	18088936	6382	74627											
SPTBN4	57731	broad.mit.edu	37	chr19	41071434	41071434	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccaggagctggggcgatcTctgctgctcaacaaaagtgc	13	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41071434	A	A	41071434	2	1	61	1	0	0	0	0	0	0	0	1	15239	1538	54	5		5	SPTBN4	19	41071434	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31387	41071434	18057549	6383	74628											
SHKBP1	92799	broad.mit.edu	37	chr19	41089452	41089452	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgggagaggggaagggaggGagagaggctggggcacttgg	24	4	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41089452	T	T	41089452	1	4	61	0	1	0	0	0	0	0	0	0	14397	1189	41	3		3	SHKBP1	19	41089452	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	18018	41089452	18039531	6384	74629											
CYP2A6	1548	broad.mit.edu	37	chr19	41356192	41356192	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgctctgtgttcagctgcAggtagtttccaatgaagggc	12	9	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41356192	G	G	41356192	3	3	61	1	0	0	0	0	1	0	0	0	4195	188	7	5	1380	5	CYP2A6	19	41356192	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	266740	41356192	17772791	6385	74630											
CYP2A7	1549	broad.mit.edu	37	chr19	41387381	41387381	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatggggagataagaccaGaccgggggttctgccatagc	16	8	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41387381	T	T	41387381	1	4	61	0	1	0	0	0	0	0	0	0	4196	957	33	3		3	CYP2A7	19	41387381	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31189	41387381	17741602	6386	74631											
CYP2A7	1549	broad.mit.edu	37	chr19	41456995	41456995	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttagcgctattcttgaagtgGaaccactctaaattcagcct	7	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41456995	A	A	41456995	1	1	61	0	1	0	0	0	0	0	0	0	4196	1189	41	4		4	CYP2A7	19	41456995	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	69614	41456995	17671988	6387	74632											
CYP2A7	1549	broad.mit.edu	37	chr19	41482807	41482808	+	Intron	DNP	CC	TT	TT													aggtccagttctgtggattcCcctcaaggtccagagcttgc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	41482808	TT	TT	41482807	1	4	61	0	1	0	0	0	0	0	0	0	4196	638	22	4		4	CYP2A7	19	41482807	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	25812	41482807	17646176	6388	74633											
CYP2A7	1549	broad.mit.edu	37	chr19	41521167	41521167	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggagggcgtgatgagagggAgataataagcctcaggctgt	18	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41521167	T	T	41521167	1	4	61	0	1	0	0	0	0	0	0	0	4196	319	11	5		5	CYP2A7	19	41521167	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	38360	41521167	17607816	6389	74634											
CYP2A7	1549	broad.mit.edu	37	chr19	41521197	41521197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaggctgttgtgaaaaaTgttaggtcacacaaagagtt	10	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41521197	C	C	41521197	1	2	61	0	1	0	0	0	0	0	0	0	4196	1479	51	5		5	CYP2A7	19	41521197	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	30	41521197	17607786	6390	74635											
CYP2F1	1572	broad.mit.edu	37	chr19	42014979	42014979	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccccctcccgtgtacacccCcggcgatatggggagtaata	10	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42014979	G	G	42014979	1	3	61	0	1	0	0	0	0	0	0	0	4204	638	22	4		4	CYP2F1	19	42014979	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	493782	42014979	17114004	6391	74636											
CEACAM5	1048	broad.mit.edu	37	chr19	42222341	42222341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagcaatatgttctggagCggaatctgtctggttttcag	12	6	4	0	rs79835792	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42222341	A	A	42222341	1	1	61	0	1	0	0	0	0	0	0	0	3225	783	27	3		3	CEACAM5	19	42222341	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	207362	42222341	16906642	6392	74637											
ATP1A3	478	broad.mit.edu	37	chr19	42489950	42489950	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgagtgtgagggaggaGgggctgggcctgagctcctg	19	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42489950	A	A	42489950	1	1	61	0	1	0	0	0	0	0	0	0	1134	1015	35	4		4	ATP1A3	19	42489950	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	267609	42489950	16639033	6393	74638											
MEGF8	1954	broad.mit.edu	37	chr19	42860558	42860559	+	Frame_Shift_Ins	INS	-	T	T													ccgatgccaccttgtggatgINStttgggggcctgggcctgcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42860559	T	T	42860558	7	5	61	1	0	1	1	0	0	0	0	0	9556	1377	48	0	4472	0	MEGF8	19	42860558	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	370608	42860558	16268425	6394	74639											
PSG3	5671	broad.mit.edu	37	chr19	43242948	43242948	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttacgatgtgtaaggtgtAggatcctgcgtcctcccggg	13	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43242948	G	G	43242948	3	3	61	1	0	0	0	0	1	0	0	0	12762	420	15	5	948	5	PSG3	19	43242948	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	382390	43242948	15886035	6395	74640											
PSG3	5671	broad.mit.edu	37	chr19	43244430	43244430	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagaccccatccagtcactCtgcttcctcctcctgtcctc	6	19	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43244430	T	T	43244430	1	4	61	0	1	0	0	0	0	0	0	0	12762	928	32	4		4	PSG3	19	43244430	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1482	43244430	15884553	6396	74641											
PSG8	440533	broad.mit.edu	37	chr19	43266869	43266869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaagatctgagggggaggCctggacatgttttttccact	13	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43266869	A	A	43266869	1	1	61	0	1	0	0	0	0	0	0	0	12767	754	26	3		3	PSG8	19	43266869	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22439	43266869	15862114	6397	74642											
PSG8	440533	broad.mit.edu	37	chr19	43268390	43268390	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttggctgggcttcaatcgtGacttgggcagtcgtgggtgg	18	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43268390	C	C	43268390	2	2	61	1	0	0	0	0	0	0	0	1	12767	1277	45	4		4	PSG8	19	43268390	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1521	43268390	15860593	6398	74643											
PSG8	440533	broad.mit.edu	37	chr19	43330780	43330780	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcgtgtcctggtgacatctGagttacctggggcgtgcaca	13	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43330780	T	T	43330780	1	4	61	0	1	0	0	0	0	0	0	0	12767	1305	45	3		3	PSG8	19	43330780	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62390	43330780	15798203	6399	74644											
PSG1	5669	broad.mit.edu	37	chr19	43375199	43375199	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagggcaggtggctcttcCctgatagctagatagacttc	12	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43375199	G	G	43375199	1	3	61	0	1	0	0	0	0	0	0	0	12759	638	22	4		4	PSG1	19	43375199	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44419	43375199	15753784	6400	74645											
PSG1	5669	broad.mit.edu	37	chr19	43380594	43380595	+	Intron	DNP	GG	TT	TT													gtcagcctctgaaggacaagGgacaggtgtggctagaacct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43380595	TT	TT	43380594	1	4	61	0	1	0	0	0	0	0	0	0	12759	1247	43	2		2	PSG1	19	43380594	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	5395	43380594	15748389	6401	74646											
PSG7	5676	broad.mit.edu	37	chr19	43433783	43433783	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccacaggtagcttgcatctgGagtctcaggatcacaggtta	11	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43433783	C	C	43433783	3	2	61	1	0	0	0	0	1	0	0	0	12766	1174	41	4	755	4	PSG7	19	43433783	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	53189	43433783	15695200	6402	74647											
PSG2	5670	broad.mit.edu	37	chr19	43575865	43575865	+	Silent	SNP	T	C	C													cacttaccagagactttgacTgtcaacgatgtggagctttc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43575865	C	C	43575865	2	2	61	1	0	0	0	0	0	0	0	1	12761	1567	55	5		5	PSG2	19	43575865	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	142082	43575865	15553118	6403	74648	334	2									
PSG2	5670	broad.mit.edu	37	chr19	43575872	43575872	+	Missense_Mutation	SNP	G	C	C													cagagactttgactgtcaacGatgtggagctttcctcgcca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43575872	C	C	43575872	3	2	61	1	0	0	0	0	1	0	0	0	12761	1059	37	4	71	4	PSG2	19	43575872	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7	43575872	15553111	6404	74649	334	2									
PSG6	5675	broad.mit.edu	37	chr19	43594170	43594170	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgttcccagaagtatagtTtattgaactgctataagcta	7	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43594170	A	A	43594170	1	1	61	0	1	0	0	0	0	0	0	0	12765	1856	64	5		5	PSG6	19	43594170	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18298	43594170	15534813	6405	74650											
PSG9	5678	broad.mit.edu	37	chr19	43762557	43762557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggacaagtcgaggttttctCctgaacggtaataggtgaat	12	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43762557	T	T	43762557	3	4	61	1	0	0	0	0	1	0	0	0	12768	855	30	4	248	4	PSG9	19	43762557	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	168387	43762557	15366426	6406	74651											
PSG9	5678	broad.mit.edu	37	chr19	43762590	43762590	+	Missense_Mutation	SNP	C	T	T													aggtgaatgaagggtaaattCtggggaggtctggaccatct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43762590	T	T	43762590	3	4	61	1	0	0	0	0	1	0	0	0	12768	913	32	4	281	4	PSG9	19	43762590	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33	43762590	15366393	6407	74652	335	2									
PSG9	5678	broad.mit.edu	37	chr19	43762592	43762592	+	Silent	SNP	G	T	T													gtgaatgaagggtaaattctGgggaggtctggaccatctgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43762592	T	T	43762592	2	4	61	1	0	0	0	0	0	0	0	1	12768	1335	47	2		2	PSG9	19	43762592	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2	43762592	15366391	6408	74653	335	2									
PSG9	5678	broad.mit.edu	37	chr19	43770735	43770735	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggggttaagatctgaggggGaggcctggacatattttttg	17	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43770735	C	C	43770735	1	2	61	0	1	0	0	0	0	0	0	0	12768	1189	41	4		4	PSG9	19	43770735	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8143	43770735	15358248	6409	74654											
CD177	57126	broad.mit.edu	37	chr19	43865899	43865899	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggcctggactcctggtcTgagggaggaggcgctggggg	23	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43865899	C	C	43865899	1	2	61	0	1	0	0	0	0	0	0	0	3001	1595	55	5		5	CD177	19	43865899	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	95164	43865899	15263084	6410	74655											
TEX101	83639	broad.mit.edu	37	chr19	43910683	43910683	+	Intron	DEL	T	-	-													gcgaggcaggtacatgggccTtgcgggctgtgggtgaaatt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43910683	-	-	43910683	6	5	61	0	1	1	0	1	0	0	0	0	15895	1624	56	0		0	TEX101	19	43910683	Intron	DEL	T	TCGA-17-Z031-01A-01W-0746-08	44784	43910683	15218300	6411	74656											
ETHE1	23474	broad.mit.edu	37	chr19	44010876	44010876	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtagaagtcagactcacgTtaaaaaaagttttatttagg	9	4	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44010876	C	C	44010876	1	2	61	0	1	0	0	0	0	0	0	0	5314	1740	60	5		5	ETHE1	19	44010876	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	100193	44010876	15118107	6412	74657											
ZNF428	126299	broad.mit.edu	37	chr19	44111923	44111923	+	Frame_Shift_Del	DEL	G	-	-													ggccctccccagcccgaggtGgttcctcctcttcctccccg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44111923	-	-	44111923	7	5	61	1	0	1	0	1	0	0	0	0	18028	1348	47	0	157	0	ZNF428	19	44111923	Frame_Shift_Del	DEL	G	TCGA-17-Z031-01A-01W-0746-08	101047	44111923	15017060	6413	74658											
PLAUR	5329	broad.mit.edu	37	chr19	44174298	44174298	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcagctcctgtgcgcgGggtccctgcacgtcttctct	14	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44174298	T	T	44174298	1	4	61	0	1	0	0	0	0	0	0	0	12118	1247	43	2		2	PLAUR	19	44174298	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	62375	44174298	14954685	6414	74659											
ZNF230	7773	broad.mit.edu	37	chr19	44511326	44511326	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttttctctgtcttgggaaGactcaaggaggaaatgggca	12	6	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44511326	T	T	44511326	1	4	61	0	1	0	0	0	0	0	0	0	17910	957	33	3		3	ZNF230	19	44511326	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	337028	44511326	14617657	6415	74660											
ZFP112	7771	broad.mit.edu	37	chr19	44901057	44901058	+	Intron	DEL	AA	-	-													cggcaacaccaaatttccgtAaaagtttctgaacttactct					rs112158433		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44901058	-	-	44901057	6	5	61	0	1	1	0	1	0	0	0	0	17764	377	13	0		0	ZFP112	19	44901057	Intron	DEL	AA	TCGA-17-Z031-01A-01W-0746-08	389731	44901057	14227926	6416	74661											
CEACAM20	125931	broad.mit.edu	37	chr19	45024771	45024771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgaaggcacgacttgaGgcatggtcagtgtttctgga	15	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45024771	T	T	45024771	3	4	61	1	0	0	0	0	1	0	0	0	3221	1000	35	2	1056	2	CEACAM20	19	45024771	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	123714	45024771	14104212	6417	74662											
CEACAM19	56971	broad.mit.edu	37	chr19	45175829	45175829	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgccatggtccctggcaAcacccctgatctcagccctt	8	17	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45175829	G	G	45175829	1	3	61	0	1	0	0	0	0	0	0	0	3220	58	2	5		5	CEACAM19	19	45175829	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	151058	45175829	13953154	6418	74663											
APOE	348	broad.mit.edu	37	chr19	45409792	45409792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacctggggtgaggccggGttggggccgggctgggggtg	23	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45409792	T	T	45409792	1	4	61	0	1	0	0	0	0	0	0	0	804	1276	44	3		3	APOE	19	45409792	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	233963	45409792	13719191	6419	74664											
APOE	348	broad.mit.edu	37	chr19	45412583	45412583	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcctgcagcgggagaccCtgtccccgccccagccgtcc	12	20	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45412583	T	T	45412583	1	4	61	0	1	0	0	0	0	0	0	0	804	696	24	4		4	APOE	19	45412583	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2791	45412583	13716400	6420	74665											
APOC2	344	broad.mit.edu	37	chr19	45452237	45452237	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtccaggcctcagcccctcCtccctcagacccaggagtcc	8	20	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45452237	T	T	45452237	1	4	61	0	1	0	0	0	0	0	0	0	800	696	24	4		4	APOC2	19	45452237	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	39654	45452237	13676746	6421	74666											
NOVA2	4858	broad.mit.edu	37	chr19	46465299	46465299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggtccttaacttttacCccaagtgagatggagccatg	11	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46465299	A	A	46465299	1	1	61	0	1	0	0	0	0	0	0	0	10650	638	22	2		2	NOVA2	19	46465299	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1013062	46465299	12663684	6422	74667											
PNMAL1	55228	broad.mit.edu	37	chr19	46973479	46973479	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcacccacctcaggatcctCcaagttagctgtgctgttgg	9	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46973479	T	T	46973479	3	4	61	1	0	0	0	0	1	0	0	0	12252	864	30	4	535	4	PNMAL1	19	46973479	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	508180	46973479	12155504	6423	74668											
PTGIR	5739	broad.mit.edu	37	chr19	47127354	47127354	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaaggccgaggggcgcgcCggtcgccgtgcgctcaggat	19	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47127354	T	T	47127354	2	4	61	1	0	0	0	0	0	0	0	1	12857	639	23	4		4	PTGIR	19	47127354	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	153875	47127354	12001629	6424	74669											
ZC3H4	23211	broad.mit.edu	37	chr19	47575029	47575029	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagccacacctggagtcccGcatacctgcatcccccagga	9	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47575029	A	A	47575029	1	1	61	0	1	0	0	0	0	0	0	0	17696	1102	38	4		4	ZC3H4	19	47575029	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	447675	47575029	11553954	6425	74670											
CCDC9	26093	broad.mit.edu	37	chr19	47761465	47761465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaggagggagagtgaggGctacaattctcttggggtac	16	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47761465	T	T	47761465	1	4	61	0	1	0	0	0	0	0	0	0	2895	1218	42	3		3	CCDC9	19	47761465	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	186436	47761465	11367518	6426	74671											
DHX34	9704	broad.mit.edu	37	chr19	47879292	47879292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagctggtgctgggccggGgcctgtacccacagctggcc	16	13	0	1	rs144080741		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47879292	T	T	47879292	3	4	61	1	0	0	0	0	1	0	0	0	4547	1232	43	2	2457	2	DHX34	19	47879292	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	117827	47879292	11249691	6427	74672											
NAPA	8775	broad.mit.edu	37	chr19	48003848	48003848	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagggtgctaggatggCgctccggacagccagcccgt	15	12	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48003848	G	G	48003848	1	3	61	0	1	0	0	0	0	0	0	0	10255	783	27	4		4	NAPA	19	48003848	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	124556	48003848	11125135	6428	74673											
ELSPBP1	64100	broad.mit.edu	37	chr19	48523048	48523048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataatgtggtctctgattGcatggaggatgaaagcaaca	11	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48523048	T	T	48523048	3	4	61	1	0	0	0	0	1	0	0	0	5125	1319	46	3	442	3	ELSPBP1	19	48523048	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	519200	48523048	10605935	6429	74674											
TMEM143	55260	broad.mit.edu	37	chr19	48867322	48867322	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcaactacgcatgcgttGcctgcctttctccaccgccg	7	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48867322	A	A	48867322	1	1	61	0	1	0	0	0	0	0	0	0	16180	1334	46	4		4	TMEM143	19	48867322	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	344274	48867322	10261661	6430	74675											
SYNGR4	23546	broad.mit.edu	37	chr19	48877123	48877123	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctagccggcctccacccTgactgtcctcccagtaggag	9	18	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48877123	A	A	48877123	1	1	61	0	1	0	0	0	0	0	0	0	15570	1595	55	5		5	SYNGR4	19	48877123	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	9801	48877123	10251860	6431	74676											
GRIN2D	2906	broad.mit.edu	37	chr19	48922324	48922324	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttccttttttttttttgtAgagacagggagttcaaggcc	9	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48922324	T	T	48922324	1	4	61	0	1	0	0	0	0	0	0	0	6848	435	15	5		5	GRIN2D	19	48922324	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	45201	48922324	10206659	6432	74677											
LMTK3	114783	broad.mit.edu	37	chr19	49001621	49001621	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgggtccctgttcaggCccgggactttctctctgttc	11	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49001621	G	G	49001621	3	3	61	1	0	0	0	0	1	0	0	0	8934	739	26	4	1697	4	LMTK3	19	49001621	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79297	49001621	10127362	6433	74678											
HSD17B14	51171	broad.mit.edu	37	chr19	49335861	49335861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggagtggggaaactgaCgtgcaggaaacagagttggg	19	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49335861	A	A	49335861	1	1	61	0	1	0	0	0	0	0	0	0	7450	551	19	3		3	HSD17B14	19	49335861	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	334240	49335861	9793122	6434	74679											
PPP1R15A	23645	broad.mit.edu	37	chr19	49378904	49378904	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggtcactgtccatttcCtggctgtctgggcagggccg	14	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49378904	T	T	49378904	2	4	61	1	0	0	0	0	0	0	0	1	12464	680	24	4		4	PPP1R15A	19	49378904	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	43043	49378904	9750079	6435	74680											
TULP2	7288	broad.mit.edu	37	chr19	49391110	49391110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcgtgagccactgtgccCagccccaggctggtcttgac	13	14	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49391110	A	A	49391110	1	1	61	0	1	0	0	0	0	0	0	0	16900	609	21	2		2	TULP2	19	49391110	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12206	49391110	9737873	6436	74681											
TULP2	7288	broad.mit.edu	37	chr19	49399614	49399614	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaaggctccaccccttcatCcactaggccccgcccacaga	6	20	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49399614	A	A	49399614	1	1	61	0	1	0	0	0	0	0	0	0	16900	870	30	3		3	TULP2	19	49399614	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8504	49399614	9729369	6437	74682											
PPFIA3	8541	broad.mit.edu	37	chr19	49649311	49649311	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcactaaccttctttgGgggtgggggcggggaccgag	20	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49649311	A	A	49649311	1	1	61	0	1	0	0	0	0	0	0	0	12407	1247	43	4		4	PPFIA3	19	49649311	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	249697	49649311	9479672	6438	74683											
TRPM4	54795	broad.mit.edu	37	chr19	49691751	49691751	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgactttcagtttcttccaGatccatctccaaacattact	3	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49691751	T	T	49691751	1	4	61	0	1	0	0	0	0	0	0	0	16713	957	33	3		3	TRPM4	19	49691751	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42440	49691751	9437232	6439	74684											
TEAD2	8463	broad.mit.edu	37	chr19	49854528	49854528	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtcgaagagagagaggggaGacaagggagggtggagcgca	22	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49854528	C	C	49854528	1	2	61	0	1	0	0	0	0	0	0	0	15861	957	33	4		4	TEAD2	19	49854528	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	162777	49854528	9274455	6440	74685											
ALDH16A1	126133	broad.mit.edu	37	chr19	49967889	49967889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaccgtccctctcacagGggctgtatgagtatctgcgg	12	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49967889	T	T	49967889	3	4	61	1	0	0	0	0	1	0	0	0	488	1246	43	2	1484	2	ALDH16A1	19	49967889	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	113361	49967889	9161094	6441	74686											
TSKS	60385	broad.mit.edu	37	chr19	50245113	50245113	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccaacagaaaagtaaagtGggacatggtggcccatattc	10	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50245113	C	C	50245113	1	2	61	0	1	0	0	0	0	0	0	0	16751	1363	47	4		4	TSKS	19	50245113	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	277224	50245113	8883870	6442	74687											
ZNF473	25888	broad.mit.edu	37	chr19	50549719	50549719	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcacgctggagagaatccCtttaaatgtagtaagtgtga	10	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50549719	T	T	50549719	2	4	61	1	0	0	0	0	0	0	0	1	18058	668	24	4		4	ZNF473	19	50549719	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	304606	50549719	8579264	6443	74688											
MYH14	79784	broad.mit.edu	37	chr19	50812515	50812515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacgcgaggccgtgccagGggcaacaacagggggaaatg	19	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50812515	T	T	50812515	1	4	61	0	1	0	0	0	0	0	0	0	10127	1247	43	2		2	MYH14	19	50812515	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	262796	50812515	8316468	6444	74689											
NAPSA	9476	broad.mit.edu	37	chr19	50865066	50865066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtcagaaaggtgtcatGggggagggaatctccccagt	16	7	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50865066	A	A	50865066	1	1	61	0	1	0	0	0	0	0	0	0	10260	1363	47	4		4	NAPSA	19	50865066	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	52551	50865066	8263917	6445	74690											
POLD1	5424	broad.mit.edu	37	chr19	50902078	50902078	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaggtgtctccggtcagaAcctccaccaagctccaactt	8	14	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50902078	T	T	50902078	1	4	61	0	1	0	0	0	0	0	0	0	12285	58	2	5		5	POLD1	19	50902078	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	37012	50902078	8226905	6446	74691											
LRRC4B	94030	broad.mit.edu	37	chr19	51021166	51021166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttgtggagctggtgctGcttgcgcagcttgtagaagg	17	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51021166	T	T	51021166	3	4	61	1	0	0	0	0	1	0	0	0	9094	1328	46	3	341	3	LRRC4B	19	51021166	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	119088	51021166	8107817	6447	74692											
LRRC4B	94030	broad.mit.edu	37	chr19	51022252	51022252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcggatcaggtccagccGgttgcccgacagctccagct	14	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51022252	T	T	51022252	2	4	61	1	0	0	0	0	0	0	0	1	9094	1115	39	1		1	LRRC4B	19	51022252	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1086	51022252	8106731	6448	74693											
SYT3	84258	broad.mit.edu	37	chr19	51133443	51133443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtacctgtagggggttggGgggagaccaaggtgaggtca	21	5	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51133443	T	T	51133443	1	4	61	0	1	0	0	0	0	0	0	0	15594	1247	43	2		2	SYT3	19	51133443	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	111191	51133443	7995540	6449	74694											
SHANK1	50944	broad.mit.edu	37	chr19	51200303	51200303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacacgccccccaggcacCccgtccttcccctcctgacc	5	24	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51200303	A	A	51200303	1	1	61	0	1	0	0	0	0	0	0	0	14377	638	22	2		2	SHANK1	19	51200303	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	66860	51200303	7928680	6450	74695											
SHANK1	50944	broad.mit.edu	37	chr19	51219698	51219698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcacctgctgcttggccGtccagatggtggcatcgggg	16	11	0	2	rs143340442		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51219698	T	T	51219698	3	4	61	1	0	0	0	0	1	0	0	0	14377	1145	40	3	6280	3	SHANK1	19	51219698	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	19395	51219698	7909285	6451	74696											
GPR32	2854	broad.mit.edu	37	chr19	51274757	51274757	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgctcatcctccaggcTagctttgccttgggctgtgt	11	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51274757	A	A	51274757	2	1	61	1	0	0	0	0	0	0	0	1	6753	1509	53	5		5	GPR32	19	51274757	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	55059	51274757	7854226	6452	74697											
KLK15	55554	broad.mit.edu	37	chr19	51330043	51330043	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagtggacttggagcagatCcataaattccggcccttgtc	10	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51330043	T	T	51330043	1	4	61	0	1	0	0	0	0	0	0	0	8474	870	30	4		4	KLK15	19	51330043	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	55286	51330043	7798940	6453	74698											
KLK3	354	broad.mit.edu	37	chr19	51362901	51362901	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtcctggaaggtggcctcTgtgaggagccacggggacag	17	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51362901	A	A	51362901	1	1	61	0	1	0	0	0	0	0	0	0	8476	1595	55	5		5	KLK3	19	51362901	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	32858	51362901	7766082	6454	74699											
KLK3	354	broad.mit.edu	37	chr19	51363384	51363384	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcgtggccaacccctgaGcacccctatcaaccccctat	5	20	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51363384	T	T	51363384	1	4	61	0	1	0	0	0	0	0	0	0	8476	986	34	3		3	KLK3	19	51363384	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	483	51363384	7765599	6455	74700											
KLK2	3817	broad.mit.edu	37	chr19	51381282	51381282	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatggctccccaatgcccTggagaggggacatctagtca	11	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51381282	G	G	51381282	1	3	61	0	1	0	0	0	0	0	0	0	8475	1595	55	5		5	KLK2	19	51381282	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	17898	51381282	7747701	6456	74701											
KLK4	9622	broad.mit.edu	37	chr19	51412525	51412525	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttctggaaacagtgtgcGgctgacagcacccactgcgg	12	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51412525	T	T	51412525	2	4	61	1	0	0	0	0	0	0	0	1	8477	1103	39	1		1	KLK4	19	51412525	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	31243	51412525	7716458	6457	74702											
KLK5	25818	broad.mit.edu	37	chr19	51451939	51451939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaccggcgcagaacatgGtgtcatctatctgtctcggg	12	11	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51451939	T	T	51451939	3	4	61	1	0	0	0	0	1	0	0	0	8478	1261	44	3	206	3	KLK5	19	51451939	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	39414	51451939	7677044	6458	74703											
SIGLEC7	27036	broad.mit.edu	37	chr19	51647734	51647734	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttccagaatctgacctgcTctgtgccctgggcctgtgag	12	13	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51647734	A	A	51647734	3	1	61	1	0	0	0	0	1	0	0	0	14426	1551	54	5	511	5	SIGLEC7	19	51647734	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	195795	51647734	7481249	6459	74704											
CD33	945	broad.mit.edu	37	chr19	51728727	51728727	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcctccttggggatcccagTaggaacaactgctccctgag	11	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51728727	C	C	51728727	2	2	61	1	0	0	0	0	0	0	0	1	3035	1635	57	5		5	CD33	19	51728727	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	80993	51728727	7400256	6460	74705											
SIGLEC8	27181	broad.mit.edu	37	chr19	51961552	51961552	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgtcaccagctcctgcacTtgcagcaagtaaccatcccc	6	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51961552	G	G	51961552	3	3	61	1	0	0	0	0	1	0	0	0	14427	1606	56	5	1437	5	SIGLEC8	19	51961552	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	232825	51961552	7167431	6461	74706											
CEACAM18	729767	broad.mit.edu	37	chr19	51979989	51979989	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatttgaaaagccctaatAaaaacaaaaatttaatgata	3	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51979989	T	T	51979989	1	4	61	0	1	0	0	0	0	0	0	0	3219	377	13	5		5	CEACAM18	19	51979989	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	18437	51979989	7148994	6462	74707											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002708	52002708	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacaggatatgttgagtcgGacagccctggtcatggtcac	12	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52002708	T	T	52002708	2	4	61	1	0	0	0	0	0	0	0	1	14421	1161	41	3		3	SIGLEC12	19	52002708	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22719	52002708	7126275	6463	74708											
HAS1	3036	broad.mit.edu	37	chr19	52222630	52222630	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgataggctccggcgcccacCgcgcccgccgccgcgggttc	14	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52222630	T	T	52222630	2	4	61	1	0	0	0	0	0	0	0	1	7027	639	23	4		4	HAS1	19	52222630	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	219922	52222630	6906353	6464	74709											
FPR3	2359	broad.mit.edu	37	chr19	52327466	52327466	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctggattttcaccatagtCcttaccttaccaaatttcat	3	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52327466	A	A	52327466	2	1	61	1	0	0	0	0	0	0	0	1	6100	842	30	3		3	FPR3	19	52327466	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	104836	52327466	6801517	6465	74710											
ZNF880	400713	broad.mit.edu	37	chr19	52876622	52876622	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgttgactcagaaatgaAaacctccataatgctttata	5	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52876622	G	G	52876622	1	3	61	0	1	0	0	0	0	0	0	0	18326	29	1	5		5	ZNF880	19	52876622	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	549156	52876622	6252361	6466	74711											
ZNF611	81856	broad.mit.edu	37	chr19	53210019	53210019	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagcaaaaatctccaatgtGatgactttcatgtctttgca	7	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53210019	C	C	53210019	3	2	61	1	0	0	0	0	1	0	0	0	18164	1290	45	4	1832	4	ZNF611	19	53210019	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	333397	53210019	5918964	6467	74712											
ZNF331	55422	broad.mit.edu	37	chr19	54080202	54080202	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagacatcataaggagaatTcctttgaatgtaaggactgt	10	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54080202	G	G	54080202	3	3	61	1	0	0	0	0	1	0	0	0	17975	1783	62	5	398	5	ZNF331	19	54080202	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	870183	54080202	5048781	6468	74713											
NLRP12	91662	broad.mit.edu	37	chr19	54301492	54301492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccccgtcactccccgatgCtcaccacagtttctggagtc	7	18	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54301492	A	A	54301492	1	1	61	0	1	0	0	0	0	0	0	0	10569	812	28	3		3	NLRP12	19	54301492	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	221290	54301492	4827491	6469	74714											
NLRP12	91662	broad.mit.edu	37	chr19	54313028	54313028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctggaagtggctcagggCctgctggataaactcctcct	11	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54313028	A	A	54313028	3	1	61	1	0	0	0	0	1	0	0	0	10569	739	26	3	1428	3	NLRP12	19	54313028	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11536	54313028	4815955	6470	74715											
OSCAR	126014	broad.mit.edu	37	chr19	54603181	54603181	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtgatctcagctcactGcaacctctgcctcccaggtt	9	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54603181	A	A	54603181	1	1	61	0	1	0	0	0	0	0	0	0	11379	1334	46	4		4	OSCAR	19	54603181	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	290153	54603181	4525802	6471	74716											
OSCAR	126014	broad.mit.edu	37	chr19	54606023	54606023	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggctccgaaagcgggccgtCgcacagagggaccacaactc	13	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54606023	T	T	54606023	1	4	61	0	1	0	0	0	0	0	0	0	11379	899	31	4		4	OSCAR	19	54606023	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2842	54606023	4522960	6472	74717											
CNOT3	4849	broad.mit.edu	37	chr19	54649193	54649193	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagagggtgggtggaccccAtactgccccaccccgaaggg	14	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54649193	T	T	54649193	1	4	61	0	1	0	0	0	0	0	0	0	3652	232	8	5		5	CNOT3	19	54649193	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	43170	54649193	4479790	6473	74718											
TSEN34	79042	broad.mit.edu	37	chr19	54697322	54697322	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctcctacctttctccgcGgttagtttttgattccaggt	7	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54697322	T	T	54697322	1	4	61	0	1	0	0	0	0	0	0	0	16738	1131	39	1		1	TSEN34	19	54697322	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	48129	54697322	4431661	6474	74719											
LILRB5	10990	broad.mit.edu	37	chr19	54760388	54760388	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggggtcactgggctctgAccagcctgcaggggtctcat	15	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54760388	C	C	54760388	3	2	61	1	0	0	0	0	1	0	0	0	8866	275	10	5	1500	5	LILRB5	19	54760388	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	63066	54760388	4368595	6475	74720											
LILRA3	11026	broad.mit.edu	37	chr19	54802622	54802622	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggagagcccagcctgGggctgccggccagggcgctg	19	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54802622	T	T	54802622	2	4	61	1	0	0	0	0	0	0	0	1	8858	1219	43	2		2	LILRA3	19	54802622	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	42234	54802622	4326361	6476	74721											
LILRA5	353514	broad.mit.edu	37	chr19	54823092	54823092	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagagccgacccccttcctGagggcagagcctggagctgg	15	13	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54823092	T	T	54823092	1	4	61	0	1	0	0	0	0	0	0	0	8860	1305	45	3		3	LILRA5	19	54823092	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	20470	54823092	4305891	6477	74722											
TTYH1	57348	broad.mit.edu	37	chr19	54940550	54940550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggcctggaggcagccaCggccgtggtgagtgccaggg	19	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54940550	A	A	54940550	3	1	61	1	0	0	0	0	1	0	0	0	16865	536	19	3	822	3	TTYH1	19	54940550	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	117458	54940550	4188433	6478	74723											
LAIR2	3904	broad.mit.edu	37	chr19	55020234	55020234	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctaaatccttctcctgccCctgtttacagaaagctctgg	6	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55020234	G	G	55020234	1	3	61	0	1	0	0	0	0	0	0	0	8675	638	22	4		4	LAIR2	19	55020234	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	79684	55020234	4108749	6479	74724											
LILRA2	11027	broad.mit.edu	37	chr19	55087107	55087107	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatggccggaatgagggTtgggggtcccaagggaggga	22	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55087107	G	G	55087107	1	3	61	0	1	0	0	0	0	0	0	0	8857	1740	60	5		5	LILRA2	19	55087107	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	66873	55087107	4041876	6480	74725											
LILRA1	11024	broad.mit.edu	37	chr19	55106535	55106535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgggaggtgtgagcccCatttaacatggtgcctcctt	13	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55106535	A	A	55106535	1	1	61	0	1	0	0	0	0	0	0	0	8856	609	21	2		2	LILRA1	19	55106535	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	19428	55106535	4022448	6481	74726											
LILRB4	11006	broad.mit.edu	37	chr19	55176499	55176499	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtgagggggtcaaggCtgaaggagatgttgcgggga	23	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55176499	T	T	55176499	1	4	61	0	1	0	0	0	0	0	0	0	8865	812	28	4		4	LILRB4	19	55176499	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	69964	55176499	3952484	6482	74727											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272157	55272157	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcaaactcgagtgaccCactgcttgtttctgtcacag	10	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55272157	T	T	55272157	1	4	61	0	1	0	0	0	0	0	0	0	8388	609	21	4		4	KIR2DL3	19	55272157	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	95658	55272157	3856826	6483	74728											
KIR2DL1	3802	broad.mit.edu	37	chr19	55286890	55286890	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcaaagtcaagtgaccCactgcttgtttctgtcacag	10	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55286890	T	T	55286890	3	4	61	1	0	0	0	0	1	0	0	0	8387	594	21	4	658	4	KIR2DL1	19	55286890	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	14733	55286890	3842093	6484	74729											
KIR3DL1	3811	broad.mit.edu	37	chr19	55330069	55330069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaggtcagaggctttccGtctgggcttctcactgtccc	10	14	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55330069	T	T	55330069	1	4	61	0	1	0	0	0	0	0	0	0	8391	1160	40	3		3	KIR3DL1	19	55330069	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	43179	55330069	3798914	6485	74730											
KIR3DL1	3811	broad.mit.edu	37	chr19	55346435	55346435	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagtttcccttcggcccAggaaggggctggctatcaag	15	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55346435	T	T	55346435	1	4	61	0	1	0	0	0	0	0	0	0	8391	203	7	5		5	KIR3DL1	19	55346435	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	16366	55346435	3782548	6486	74731											
KIR3DL1	3811	broad.mit.edu	37	chr19	55350801	55350801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcattaggccatagagcagGggagtgagttctcaggtcag	15	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55350801	A	A	55350801	1	1	61	0	1	0	0	0	0	0	0	0	8391	1247	43	4		4	KIR3DL1	19	55350801	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4366	55350801	3778182	6487	74732											
GP6	51206	broad.mit.edu	37	chr19	55526377	55526377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgggaggggcgggaggGgcggaagcggcctctgcaca	21	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55526377	T	T	55526377	3	4	61	1	0	0	0	0	1	0	0	0	6649	1232	43	2	930	2	GP6	19	55526377	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	175576	55526377	3602606	6488	74733											
PTPRH	5794	broad.mit.edu	37	chr19	55698887	55698887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccgagactcacagggcaGcacatttctgtagcggttct	10	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55698887	T	T	55698887	3	4	61	1	0	0	0	0	1	0	0	0	12911	962	34	3	815	3	PTPRH	19	55698887	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	172510	55698887	3430096	6489	74734											
ZNF628	89887	broad.mit.edu	37	chr19	55994074	55994074	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catccaccagcgggtgcacaCgggcctgcgggccttcacct	12	17	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55994074	T	T	55994074	3	4	61	1	0	0	0	0	1	0	0	0	18179	536	19	4	1504	4	ZNF628	19	55994074	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	295187	55994074	3134909	6490	74735											
NLRP11	204801	broad.mit.edu	37	chr19	56316487	56316487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaagttgtcctagagtcCcaccaccaccaccggccctc	7	17	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56316487	A	A	56316487	1	1	61	0	1	0	0	0	0	0	0	0	10568	638	22	2		2	NLRP11	19	56316487	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	322413	56316487	2812496	6491	74736											
NLRP4	147945	broad.mit.edu	37	chr19	56369394	56369394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagagagtggcctgaccCcgctgctcctataacagaga	10	13	0	3	rs147162207	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56369394	A	A	56369394	3	1	61	1	0	0	0	0	1	0	0	0	10574	623	22	2	641	2	NLRP4	19	56369394	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	52907	56369394	2759589	6492	74737											
NLRP4	147945	broad.mit.edu	37	chr19	56382065	56382065	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaggtgttttcagataatCcagaacttcatctcagctgg	10	8	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56382065	A	A	56382065	1	1	61	0	1	0	0	0	0	0	0	0	10574	870	30	3		3	NLRP4	19	56382065	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12671	56382065	2746918	6493	74738											
NLRP13	126204	broad.mit.edu	37	chr19	56410347	56410347	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggggaaagtaattgcgtcCcgaagctgtgctgtgtttac	15	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56410347	G	G	56410347	1	3	61	0	1	0	0	0	0	0	0	0	10570	638	22	4		4	NLRP13	19	56410347	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	28282	56410347	2718636	6494	74739											
NLRP13	126204	broad.mit.edu	37	chr19	56413425	56413425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgcaggttaccatctGggcgacccaaggcctcacac	11	15	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56413425	T	T	56413425	3	4	61	1	0	0	0	0	1	0	0	0	10570	1348	47	2	376	2	NLRP13	19	56413425	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3078	56413425	2715558	6495	74740											
NLRP13	126204	broad.mit.edu	37	chr19	56424480	56424480	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcccaacccctgccctccCcaccaagactatcgtctggg	6	20	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56424480	G	G	56424480	3	3	61	1	0	0	0	0	1	0	0	0	10570	623	22	4	2454	4	NLRP13	19	56424480	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11055	56424480	2704503	6496	74741											
NLRP8	126205	broad.mit.edu	37	chr19	56477721	56477721	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgcagggtgctgagatccCcccggtgccgtctgcagtgt	14	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56477721	T	T	56477721	3	4	61	1	0	0	0	0	1	0	0	0	10578	623	22	4	2374	4	NLRP8	19	56477721	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	53241	56477721	2651262	6497	74742											
NLRP5	126206	broad.mit.edu	37	chr19	56572978	56572978	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcaagctatgcacctgggAgttccttctcaaagatggag	12	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56572978	C	C	56572978	1	2	61	0	1	0	0	0	0	0	0	0	10575	319	11	5		5	NLRP5	19	56572978	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	95257	56572978	2556005	6498	74743											
ZNF582	147948	broad.mit.edu	37	chr19	56895530	56895530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacattcatatggcttttcaCctgtatgaattctgtaatgt	6	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56895530	A	A	56895530	3	1	61	1	0	0	0	0	1	0	0	0	18141	507	18	3	301	3	ZNF582	19	56895530	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	322552	56895530	2233453	6499	74744											
ZNF667	63934	broad.mit.edu	37	chr19	56953401	56953401	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctctaaatggtgacttctTtgctgtagactctgacttaa	7	8	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56953401	A	A	56953401	3	1	61	1	0	0	0	0	1	0	0	0	18201	1838	64	5	873	5	ZNF667	19	56953401	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	57871	56953401	2175582	6500	74745											
PEG3	5178	broad.mit.edu	37	chr19	57327366	57327366	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagcacgaactctctgaTggttgatagcatcgaagctc	9	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57327366	C	C	57327366	3	2	61	1	0	0	0	0	1	0	0	0	11814	1464	51	5	2326	5	PEG3	19	57327366	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	373965	57327366	1801617	6501	74746											
ZNF17	7565	broad.mit.edu	37	chr19	57929296	57929296	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggattatatggtttttgAggacgtggccatacatttct	11	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57929296	G	G	57929296	3	3	61	1	0	0	0	0	1	0	0	0	17869	304	11	5	38	5	ZNF17	19	57929296	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	601930	57929296	1199687	6502	74747											
ZNF549	256051	broad.mit.edu	37	chr19	58042541	58042541	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agccatgggtctggcccacaGatgcaggtaacaataatgtc	11	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58042541	C	C	58042541	1	2	61	0	1	0	0	0	0	0	0	0	18108	957	33	4		4	ZNF549	19	58042541	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	113245	58042541	1086442	6503	74748											
ZNF549	256051	broad.mit.edu	37	chr19	58048848	58048848	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggacagtggagagaaacAcatcagaaaggaggagagca	14	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58048848	G	G	58048848	3	3	61	1	0	0	0	0	1	0	0	0	18108	159	6	5	447	5	ZNF549	19	58048848	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	6307	58048848	1080135	6504	74749											
ZNF417	147687	broad.mit.edu	37	chr19	58419053	58419053	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaactgtggctacagtGtcgacattcatgcaagtggg	12	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58419053	C	C	58419053	1	2	61	0	1	0	0	0	0	0	0	0	18021	1392	48	4		4	ZNF417	19	58419053	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	370205	58419053	709930	6505	74750											
ZNF606	80095	broad.mit.edu	37	chr19	58491795	58491795	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcagagaaagatcataaTagggaaaagaatagtgaaaa	9	3	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58491795	C	C	58491795	1	2	61	0	1	0	0	0	0	0	0	0	18159	1421	49	5		5	ZNF606	19	58491795	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	72742	58491795	637188	6506	74751											
ZSCAN1	284312	broad.mit.edu	37	chr19	58558264	58558264	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaatcagagacttccataAtcaagtaaactgtaattttc	4	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58558264	G	G	58558264	1	3	61	0	1	0	0	0	0	0	0	0	18355	116	4	5		5	ZSCAN1	19	58558264	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	66469	58558264	570719	6507	74752											
C20orf96	140680	broad.mit.edu	37	chr20	270053	270053	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtggcataaatgagataTaaacttctatatcaatactt	5	6	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	270053	C	C	270053	1	2	61	0	1	0	0	0	0	0	0	0	2144	1421	49	5		5	C20orf96	20	270053	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08		270053	62755467	6508	74753											
C20orf54	113278	broad.mit.edu	37	chr20	746024	746024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtagtaggtgggcagcCggctcatgaacggcaggaag	18	7	1	2	rs142157418		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	746024	T	T	746024	3	4	61	1	0	0	0	0	1	0	0	0	2136	652	23	4	1030	4	C20orf54	20	746024	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	475971	746024	62279496	6509	74754											
SNPH	9751	broad.mit.edu	37	chr20	1256035	1256035	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgattgcttttctgacCctctaagtcccgactcttgt	7	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1256035	T	T	1256035	1	4	61	0	1	0	0	0	0	0	0	0	14964	638	22	4		4	SNPH	20	1256035	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	510011	1256035	61769485	6510	74755											
SDCBP2	27111	broad.mit.edu	37	chr20	1301287	1301287	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcatctccagcctcactgTcaacttttaatcttggccac	4	15	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1301287	G	G	1301287	1	3	61	0	1	0	0	0	0	0	0	0	14069	1682	58	5		5	SDCBP2	20	1301287	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	45252	1301287	61724233	6511	74756											
SIRPA	140885	broad.mit.edu	37	chr20	1902267	1902267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgctgacccgcgaggaCgttcactctcaagtcatctg	12	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1902267	A	A	1902267	3	1	61	1	0	0	0	0	1	0	0	0	14445	535	19	3	673	3	SIRPA	20	1902267	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	600980	1902267	61123253	6512	74757											
SIRPA	140885	broad.mit.edu	37	chr20	1915565	1915565	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgtgcatattccttctctCtactgcagccaagagtggct	8	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1915565	T	T	1915565	1	4	61	0	1	0	0	0	0	0	0	0	14445	928	32	4		4	SIRPA	20	1915565	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	13298	1915565	61109955	6513	74758											
PDYN	5173	broad.mit.edu	37	chr20	1961358	1961358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctgagcttctcctccaGgctcttgctcagagtgttct	8	15	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1961358	T	T	1961358	3	4	61	1	0	0	0	0	1	0	0	0	11793	991	35	2	392	2	PDYN	20	1961358	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	45793	1961358	61064162	6514	74759											
TGM3	7053	broad.mit.edu	37	chr20	2309023	2309023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccagaaggtaggagggacGctggcggggcagtgccgcga	19	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2309023	A	A	2309023	1	1	61	0	1	0	0	0	0	0	0	0	15954	1102	38	4		4	TGM3	20	2309023	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	347665	2309023	60716497	6515	74760											
CPXM1	56265	broad.mit.edu	37	chr20	2778897	2778897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgtcctgctcctcagcaCaccaggctccatcatataga	8	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2778897	A	A	2778897	3	1	61	1	0	0	0	0	1	0	0	0	3869	478	17	3	1757	3	CPXM1	20	2778897	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	469874	2778897	60246623	6516	74761											
AVP	551	broad.mit.edu	37	chr20	3065349	3065349	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaggtggaccccgtatgCagcactgcttggtggctctg	13	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3065349	A	A	3065349	1	1	61	0	1	0	0	0	0	0	0	0	1234	725	25	3		3	AVP	20	3065349	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	286452	3065349	59960171	6517	74762											
C20orf194	25943	broad.mit.edu	37	chr20	3305421	3305421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattctccttcacacatcCcattattttactgaaacatt	2	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3305421	A	A	3305421	1	1	61	0	1	0	0	0	0	0	0	0	2121	638	22	2		2	C20orf194	20	3305421	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	240072	3305421	59720099	6518	74763											
SMOX	54498	broad.mit.edu	37	chr20	4162573	4162573	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaatgaccctgacgacCcagaggctaccaagcgcctg	11	14	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4162573	T	T	4162573	3	4	61	1	0	0	0	0	1	0	0	0	14917	623	22	4	569	4	SMOX	20	4162573	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	857152	4162573	58862947	6519	74764											
RASSF2	9770	broad.mit.edu	37	chr20	4768388	4768388	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgggtaatcggtggccttcAgcttctgtttctctgcaacc	11	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4768388	C	C	4768388	3	2	61	1	0	0	0	0	1	0	0	0	13194	188	7	5	288	5	RASSF2	20	4768388	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	605815	4768388	58257132	6520	74765											
PLCB4	5332	broad.mit.edu	37	chr20	9263139	9263139	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgcaagtttctaattgcttCctctccctgcctttttattt	4	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9263139	A	A	9263139	1	1	61	0	1	0	0	0	0	0	0	0	12125	870	30	3		3	PLCB4	20	9263139	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4494751	9263139	53762381	6521	74766											
PLCB4	5332	broad.mit.edu	37	chr20	9368094	9368094	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagtttcaatattgtaacTtcactatatccctagatgtg	5	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9368094	C	C	9368094	1	2	61	0	1	0	0	0	0	0	0	0	12125	1624	56	5		5	PLCB4	20	9368094	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	104955	9368094	53657426	6522	74767											
TASP1	55617	broad.mit.edu	37	chr20	13415754	13415754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctgcatgaacggaggaCaatcactccgccaagcacgc	9	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13415754	A	A	13415754	3	1	61	1	0	0	0	0	1	0	0	0	15708	478	17	3	241	3	TASP1	20	13415754	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4047660	13415754	49609766	6523	74768											
SEL1L2	80343	broad.mit.edu	37	chr20	13858203	13858203	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcatttgcactcccggccTttgctgcctttaagaagtag	10	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13858203	A	A	13858203	3	1	61	1	0	0	0	0	1	0	0	0	14124	1609	56	5	1117	5	SEL1L2	20	13858203	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	442449	13858203	49167317	6524	74769											
MACROD2	140733	broad.mit.edu	37	chr20	14738448	14738448	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatccagtatctccgtgatTaccttcatctgcccccggag	8	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14738448	A	A	14738448	1	1	61	0	1	0	0	0	0	0	0	0	9234	1769	61	5		5	MACROD2	20	14738448	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	880245	14738448	48287072	6525	74770											
MACROD2	140733	broad.mit.edu	37	chr20	15450266	15450266	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagaccgactgagcaagaatCcagtccacaagaaaggggcc	12	11	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15450266	G	G	15450266	1	3	61	0	1	0	0	0	0	0	0	0	9234	870	30	4		4	MACROD2	20	15450266	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	711818	15450266	47575254	6526	74771											
KIF16B	55614	broad.mit.edu	37	chr20	16304322	16304322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatttatgaacatctcttcTgaccctagaccagagtctgc	6	11	3	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16304322	A	A	16304322	1	1	61	0	1	0	0	0	0	0	0	0	8348	1595	55	5		5	KIF16B	20	16304322	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	854056	16304322	46721198	6527	74772											
OTOR	56914	broad.mit.edu	37	chr20	16729505	16729505	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatcatttaaattttttttCttccagatactatttctctg	2	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16729505	G	G	16729505	1	3	61	0	1	0	0	0	0	0	0	0	11402	928	32	4		4	OTOR	20	16729505	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	425183	16729505	46296015	6528	74773											
CSRP2BP	57325	broad.mit.edu	37	chr20	18143407	18143407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgaaacgcaaactgattGtcagacaagcgaaaagggat	11	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18143407	T	T	18143407	3	4	61	1	0	0	0	0	1	0	0	0	4002	1377	48	3	1511	3	CSRP2BP	20	18143407	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1413902	18143407	44882113	6529	74774											
CSRP2BP	57325	broad.mit.edu	37	chr20	18168094	18168094	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacgcattctttctgaggctCcggcgctgatgcgaatacag	11	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18168094	A	A	18168094	2	1	61	1	0	0	0	0	0	0	0	1	4002	842	30	3		3	CSRP2BP	20	18168094	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	24687	18168094	44857426	6530	74775											
RIN2	54453	broad.mit.edu	37	chr20	19955660	19955660	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctggccaggactgaaaccCagacgagcatgccagaaaca	12	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19955660	T	T	19955660	4	4	61	1	0	0	0	0	0	1	0	0	13483	595	21	4	1017	4	RIN2	20	19955660	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1787566	19955660	43069860	6531	74776											
PLK1S1	55857	broad.mit.edu	37	chr20	21143196	21143196	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatttttctgggtggtagtGatcttatgtaaggacaaaat	11	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21143196	T	T	21143196	1	4	61	0	1	0	0	0	0	0	0	0	12190	1305	45	3		3	PLK1S1	20	21143196	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1187536	21143196	41882324	6532	74777											
PLK1S1	55857	broad.mit.edu	37	chr20	21143844	21143844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactgttctgtttttaattGtagacatttctagagaccat	6	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21143844	T	T	21143844	1	4	61	0	1	0	0	0	0	0	0	0	12190	1392	48	3		3	PLK1S1	20	21143844	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	648	21143844	41881676	6533	74778											
XRN2	22803	broad.mit.edu	37	chr20	21326914	21326914	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttagaaatagttaaatgaAtctgtgttagcatgactgtt	8	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21326914	T	T	21326914	1	4	61	0	1	0	0	0	0	0	0	0	17587	116	4	5		5	XRN2	20	21326914	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	183070	21326914	41698606	6534	74779											
CST11	140880	broad.mit.edu	37	chr20	23433449	23433449	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccagggctcagccatcatCcttcagctgcagaggaacag	11	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23433449	A	A	23433449	1	1	61	0	1	0	0	0	0	0	0	0	4005	870	30	3		3	CST11	20	23433449	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2106535	23433449	39592071	6535	74780											
CST8	10047	broad.mit.edu	37	chr20	23472165	23472165	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtcttgaatccagctgGgctgacgctaacaggaggca	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23472165	T	T	23472165	1	4	61	0	1	0	0	0	0	0	0	0	4012	1247	43	2		2	CST8	20	23472165	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	38716	23472165	39553355	6536	74781											
CST9L	128821	broad.mit.edu	37	chr20	23548945	23548946	+	Missense_Mutation	DNP	GG	TT	TT													cagcaaactccactgtggcaGggaggtaacgagccatgaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	23548946	TT	TT	23548945	3	4	61	1	0	0	0	0	1	0	0	0	4014	1000	35	2	312	2	CST9L	20	23548945	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	76780	23548945	39476575	6537	74782											
CST9	128822	broad.mit.edu	37	chr20	23584119	23584119	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccactaaggcacaagcaGggcagcctggtacagcctgc	11	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23584119	T	T	23584119	1	4	61	0	1	0	0	0	0	0	0	0	4013	1015	35	2		2	CST9	20	23584119	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	35174	23584119	39441401	6538	74783											
CST4	1472	broad.mit.edu	37	chr20	23669238	23669238	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcttaggcatgaagggcatCagcggagagtcagagaaagc	15	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23669238	A	A	23669238	1	1	61	0	1	0	0	0	0	0	0	0	4008	841	29	3		3	CST4	20	23669238	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	85119	23669238	39356282	6539	74784											
VSX1	30813	broad.mit.edu	37	chr20	25062171	25062171	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccgcgaatgcccctcccgcGacggggcctcgctctgggct	13	18	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25062171	T	T	25062171	1	4	61	0	1	0	0	0	0	0	0	0	17358	1073	37	3		3	VSX1	20	25062171	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1392933	25062171	37963349	6540	74785											
DEFB115	245929	broad.mit.edu	37	chr20	29847318	29847318	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgcaggaaatcatgcaaAgaaattgagaggaagaaaga	12	3	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29847318	C	C	29847318	3	2	61	1	0	0	0	0	1	0	0	0	4443	69	3	5	156	5	DEFB115	20	29847318	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4785147	29847318	33178202	6541	74786											
DEFB118	117285	broad.mit.edu	37	chr20	29956750	29956750	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgccgcctaagaaactagGggaaagctcggctcacatct	11	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29956750	A	A	29956750	1	1	61	0	1	0	0	0	0	0	0	0	4445	1247	43	4		4	DEFB118	20	29956750	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	109432	29956750	33068770	6542	74787											
REM1	28954	broad.mit.edu	37	chr20	30070222	30070222	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcggcgcacacatcaggcaGaccatgtgcccatcatcctc	9	16	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30070222	T	T	30070222	3	4	61	1	0	0	0	0	1	0	0	0	13330	942	33	3	566	3	REM1	20	30070222	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	113472	30070222	32955298	6543	74788											
FOXS1	2307	broad.mit.edu	37	chr20	30432902	30432902	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaatgagcactgcctgccGgtcgtggcgttggggactcc	17	11	0	1	rs142730499	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30432902	T	T	30432902	2	4	61	1	0	0	0	0	0	0	0	1	6095	1103	39	1		1	FOXS1	20	30432902	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	362680	30432902	32592618	6544	74789											
DUSP15	128853	broad.mit.edu	37	chr20	30436419	30436419	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctctccatttcccgcctcgGatgttcccatgggaagtcac	8	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30436419	T	T	30436419	1	4	61	0	1	0	0	0	0	0	0	0	4855	1189	41	3		3	DUSP15	20	30436419	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3517	30436419	32589101	6545	74790											
HCK	3055	broad.mit.edu	37	chr20	30662476	30662476	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccacccggaaggagggctAcatcccaagcaactatgtcg	12	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30662476	T	T	30662476	3	4	61	1	0	0	0	0	1	0	0	0	7060	391	14	5	404	5	HCK	20	30662476	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	226057	30662476	32363044	6546	74791											
HCK	3055	broad.mit.edu	37	chr20	30689371	30689371	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaggtggtggctgcaaGgtggctccagcaccatccgc	14	14	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30689371	A	A	30689371	1	1	61	0	1	0	0	0	0	0	0	0	7060	1015	35	4		4	HCK	20	30689371	3'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	26895	30689371	32336149	6547	74792											
TM9SF4	9777	broad.mit.edu	37	chr20	30752939	30752939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagatgaagcagagctgtGcccatgaaccctgcctgccg	11	14	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30752939	T	T	30752939	1	4	61	0	1	0	0	0	0	0	0	0	16103	1334	46	3		3	TM9SF4	20	30752939	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	63568	30752939	32272581	6548	74793											
KIF3B	9371	broad.mit.edu	37	chr20	30898858	30898858	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactggagattgagaagcgGgccattgtagaggatcacag	14	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30898858	T	T	30898858	2	4	61	1	0	0	0	0	0	0	0	1	8371	1219	43	2		2	KIF3B	20	30898858	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	145919	30898858	32126662	6549	74794											
SUN5	140732	broad.mit.edu	37	chr20	31584082	31584082	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccccagattctggctataGctctgctttttaggtaataa	7	10	2	1	rs144900840	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31584082	A	A	31584082	1	1	61	0	1	0	0	0	0	0	0	0	15512	986	34	4		4	SUN5	20	31584082	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	685224	31584082	31441438	6550	74795											
BPIL1	80341	broad.mit.edu	37	chr20	31608083	31608084	+	Intron	INS	-	C	C													gggaggctgggtggctggtgINScccccctcatggctctgtgc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31608084	C	C	31608083	6	5	61	0	1	1	1	0	0	0	0	0	1500	1334	46	0		0	BPIL1	20	31608083	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	24001	31608083	31417437	6551	74796											
BPIL3	128859	broad.mit.edu	37	chr20	31624177	31624177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggccaggtgcaggtagcaGctggctggtgccagcttctc	16	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31624177	T	T	31624177	1	4	61	0	1	0	0	0	0	0	0	0	1502	986	34	3		3	BPIL3	20	31624177	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16094	31624177	31401343	6552	74797											
BPIL3	128859	broad.mit.edu	37	chr20	31627895	31627895	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcctgggctggcgctacAgggagatggctgggttcagt	18	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31627895	T	T	31627895	1	4	61	0	1	0	0	0	0	0	0	0	1502	203	7	5		5	BPIL3	20	31627895	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	3718	31627895	31397625	6553	74798											
C20orf185	359710	broad.mit.edu	37	chr20	31643444	31643444	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctgctttaagagcagataAgagcaggttgtgattctcag	11	6	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31643444	T	T	31643444	1	4	61	0	1	0	0	0	0	0	0	0	2119	87	3	5		5	C20orf185	20	31643444	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	15549	31643444	31382076	6554	74799											
C20orf186	149954	broad.mit.edu	37	chr20	31680473	31680473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaatggcatggtgagtcaCagccccaccagggggaggtg	15	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31680473	T	T	31680473	1	4	61	0	1	0	0	0	0	0	0	0	2120	493	17	4		4	C20orf186	20	31680473	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	37029	31680473	31345047	6555	74800											
C20orf186	149954	broad.mit.edu	37	chr20	31685514	31685514	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagaaggacaaagcgcTggtgaaggtgttggccactg	16	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31685514	A	A	31685514	3	1	61	1	0	0	0	0	1	0	0	0	2120	1580	55	5	1532	5	C20orf186	20	31685514	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	5041	31685514	31340006	6556	74801											
C20orf70	140683	broad.mit.edu	37	chr20	31763078	31763078	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcatagaggatatggacCatgttgatattacctgggcc	10	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31763078	T	T	31763078	1	4	61	0	1	0	0	0	0	0	0	0	2138	609	21	4		4	C20orf70	20	31763078	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	77564	31763078	31262442	6557	74802											
C20orf114	92747	broad.mit.edu	37	chr20	31879819	31879819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaatcagggcctctctgGcctgtgggcattgcgccccc	14	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31879819	T	T	31879819	1	4	61	0	1	0	0	0	0	0	0	0	2104	1218	42	3		3	C20orf114	20	31879819	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	116741	31879819	31145701	6558	74803											
C20orf114	92747	broad.mit.edu	37	chr20	31879849	31879849	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcgccccctgtggggctTgggtggaactgcaagttggt	16	9	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31879849	G	G	31879849	1	3	61	0	1	0	0	0	0	0	0	0	2104	1827	63	5		5	C20orf114	20	31879849	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	30	31879849	31145671	6559	74804											
C20orf114	92747	broad.mit.edu	37	chr20	31887530	31887530	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctggcacttagtggatgctCgataaatgtcactgtcatca	9	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31887530	A	A	31887530	1	1	61	0	1	0	0	0	0	0	0	0	2104	899	31	3		3	C20orf114	20	31887530	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7681	31887530	31137990	6560	74805											
C20orf114	92747	broad.mit.edu	37	chr20	31891579	31891579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgtcatctgttaaatgGggagtggaggcaagtactat	13	5	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31891579	T	T	31891579	1	4	61	0	1	0	0	0	0	0	0	0	2104	1247	43	2		2	C20orf114	20	31891579	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4049	31891579	31133941	6561	74806											
ZNF341	84905	broad.mit.edu	37	chr20	32336593	32336593	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccacgtctgtgggattccaGaacctggatcttttgtgcca	10	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32336593	T	T	32336593	1	4	61	0	1	0	0	0	0	0	0	0	17983	957	33	3		3	ZNF341	20	32336593	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	445014	32336593	30688927	6562	74807											
ZNF341	84905	broad.mit.edu	37	chr20	32344884	32344884	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcaatcagggaggcagggaGagtgcccctggctgggagct	18	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32344884	T	T	32344884	1	4	61	0	1	0	0	0	0	0	0	0	17983	957	33	3		3	ZNF341	20	32344884	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	8291	32344884	30680636	6563	74808											
ITCH	83737	broad.mit.edu	37	chr20	33001510	33001510	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatgccttaactgggaaaAaagtgaccattttttctgta	8	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33001510	C	C	33001510	1	2	61	0	1	0	0	0	0	0	0	0	7938	29	1	5		5	ITCH	20	33001510	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	656626	33001510	30024010	6564	74809											
ACSS2	55902	broad.mit.edu	37	chr20	33464093	33464093	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgggcccacctcctctcCtgtcccgcctggccccgccc	8	24	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33464093	A	A	33464093	1	1	61	0	1	0	0	0	0	0	0	0	189	696	24	2		2	ACSS2	20	33464093	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	462583	33464093	29561427	6565	74810											
ACSS2	55902	broad.mit.edu	37	chr20	33513944	33513944	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagaggtggagtcagcacTtgtggaacatgaggctgttg	16	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33513944	C	C	33513944	3	2	61	1	0	0	0	0	1	0	0	0	189	1609	56	5	1868	5	ACSS2	20	33513944	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	49851	33513944	29511576	6566	74811											
TRPC4AP	26133	broad.mit.edu	37	chr20	33603840	33603840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacagttctggttgtgacCatggaggacaagggcagatg	15	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33603840	A	A	33603840	3	1	61	1	0	0	0	0	1	0	0	0	16706	594	21	2	1112	2	TRPC4AP	20	33603840	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	89896	33603840	29421680	6567	74812											
EDEM2	55741	broad.mit.edu	37	chr20	33722428	33722428	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtcctgagcccaaatccTggaccactcccaaggtcacc	9	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33722428	A	A	33722428	1	1	61	0	1	0	0	0	0	0	0	0	4952	1595	55	5		5	EDEM2	20	33722428	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	118588	33722428	29303092	6568	74813											
FAM83C	128876	broad.mit.edu	37	chr20	33874655	33874655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccctcaccacggaatgGgccgaactttgtgatgaggt	13	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33874655	T	T	33874655	3	4	61	1	0	0	0	0	1	0	0	0	5688	1232	43	2	320	2	FAM83C	20	33874655	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	152227	33874655	29150865	6569	74814											
FAM83C	128876	broad.mit.edu	37	chr20	33874994	33874995	+	Frame_Shift_Ins	INS	-	G	G													ggccgaagggggcctgagttINSgggggtaaccccagagtcag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33874995	G	G	33874994	7	5	61	1	0	1	1	0	0	0	0	0	5688	1812	63	0	659	0	FAM83C	20	33874994	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	339	33874994	29150526	6570	74815											
FAM83C	128876	broad.mit.edu	37	chr20	33875651	33875651	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcgggtcctcaccgccacAgaagccctccacaggctgcg	11	18	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33875651	G	G	33875651	3	3	61	1	0	0	0	0	1	0	0	0	5688	188	7	5	1316	5	FAM83C	20	33875651	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	657	33875651	29149869	6571	74816											
CEP250	11190	broad.mit.edu	37	chr20	34091361	34091361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaagtaaagcacagcgcGggagcctagagcacatgaag	13	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34091361	T	T	34091361	3	4	61	1	0	0	0	0	1	0	0	0	3282	1116	39	1	5270	1	CEP250	20	34091361	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	215710	34091361	28934159	6572	74817											
PHF20	51230	broad.mit.edu	37	chr20	34501842	34501842	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctctttttggttgaattgtCcctgagcctttgtgctgctt	9	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34501842	T	T	34501842	1	4	61	0	1	0	0	0	0	0	0	0	11926	870	30	4		4	PHF20	20	34501842	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	410481	34501842	28523678	6573	74818											
C20orf152	140894	broad.mit.edu	37	chr20	34572863	34572863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctctctctgcagactcctActatcccttcgggtctcagc	6	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34572863	T	T	34572863	1	4	61	0	1	0	0	0	0	0	0	0	2114	406	14	5		5	C20orf152	20	34572863	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	71021	34572863	28452657	6574	74819											
EPB41L1	2036	broad.mit.edu	37	chr20	34761755	34761755	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagctcaggaggaggcccCgcagcagcccgaggctgctg	16	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34761755	T	T	34761755	3	4	61	1	0	0	0	0	1	0	0	0	5194	652	23	4	58	4	EPB41L1	20	34761755	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	188892	34761755	28263765	6575	74820											
C20orf24	55969	broad.mit.edu	37	chr20	35238010	35238010	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgttgctccagattctgCctgatcaatgcaggagtcct	9	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35238010	T	T	35238010	2	4	61	1	0	0	0	0	0	0	0	1	2127	747	26	4		4	C20orf24	20	35238010	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	476255	35238010	27787510	6576	74821											
C20orf117	140710	broad.mit.edu	37	chr20	35437112	35437112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctgcagctcaaactccCgcctcaggagcgccctctgc	9	18	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35437112	A	A	35437112	3	1	61	1	0	0	0	0	1	0	0	0	2105	652	23	1	2461	1	C20orf117	20	35437112	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	199102	35437112	27588408	6577	74822											
C20orf132	140699	broad.mit.edu	37	chr20	35788620	35788621	+	Intron	DNP	CC	AA	AA													cttgagagttgagaaagtacCcattcattaggccagtgacg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	35788621	AA	AA	35788620	1	1	61	0	1	0	0	0	0	0	0	0	2108	638	22	2		2	C20orf132	20	35788620	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	351508	35788620	27236900	6578	74823											
RPN2	6185	broad.mit.edu	37	chr20	35867230	35867230	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcattaaatgacggtccCatggcaaatcctggcacacc	7	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35867230	T	T	35867230	1	4	61	0	1	0	0	0	0	0	0	0	13719	609	21	4		4	RPN2	20	35867230	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	78610	35867230	27158290	6579	74824											
SRC	6714	broad.mit.edu	37	chr20	35987996	35987996	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggagaccccgaggcagggGagagcctggagtgctggtgg	22	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35987996	T	T	35987996	1	4	61	0	1	0	0	0	0	0	0	0	15252	1189	41	3		3	SRC	20	35987996	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	120766	35987996	27037524	6580	74825											
SRC	6714	broad.mit.edu	37	chr20	36024453	36024453	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagggtgggcctggggccCcgcctgggcctcccttccct	15	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36024453	T	T	36024453	1	4	61	0	1	0	0	0	0	0	0	0	15252	638	22	4		4	SRC	20	36024453	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	36457	36024453	27001067	6581	74826											
BLCAP	10904	broad.mit.edu	37	chr20	36147141	36147141	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactttacaataaaagcacCggtcagtgccattattcaca	7	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36147141	A	A	36147141	1	1	61	0	1	0	0	0	0	0	0	0	1448	667	23	1		1	BLCAP	20	36147141	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	122688	36147141	26878379	6582	74827											
CTNNBL1	56259	broad.mit.edu	37	chr20	36390243	36390243	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaccagccattcaaaatGatcaagagcaggatgggaaa	10	7	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36390243	T	T	36390243	1	4	61	0	1	0	0	0	0	0	0	0	4052	1305	45	3		3	CTNNBL1	20	36390243	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	243102	36390243	26635277	6583	74828											
CTNNBL1	56259	broad.mit.edu	37	chr20	36396332	36396332	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaagttgtcctcccaaatGactggtgtctgtctcccttc	7	13	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36396332	T	T	36396332	1	4	61	0	1	0	0	0	0	0	0	0	4052	1305	45	3		3	CTNNBL1	20	36396332	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6089	36396332	26629188	6584	74829											
CTNNBL1	56259	broad.mit.edu	37	chr20	36476650	36476650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcagcctcaaactcctGggctcaagtaatcctcctgc	7	16	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36476650	T	T	36476650	1	4	61	0	1	0	0	0	0	0	0	0	4052	1363	47	2		2	CTNNBL1	20	36476650	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	80318	36476650	26548870	6585	74830											
KIAA0406	9675	broad.mit.edu	37	chr20	36640859	36640859	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggagaagcattcagatcatCagagttccaacgccgttcct	9	11	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36640859	A	A	36640859	3	1	61	1	0	0	0	0	1	0	0	0	8243	826	29	3	1937	3	KIAA0406	20	36640859	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	164209	36640859	26384661	6586	74831											
KIAA1755	85449	broad.mit.edu	37	chr20	36870209	36870209	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcctcctggggctccacTtggaggtagaagtcaccctg	12	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36870209	G	G	36870209	3	3	61	1	0	0	0	0	1	0	0	0	8327	1606	56	5	3326	5	KIAA1755	20	36870209	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	229350	36870209	26155311	6587	74832											
BPI	671	broad.mit.edu	37	chr20	36954950	36954950	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaacctggactgtgtcactCcggagcctgaggcttgagtc	12	12	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36954950	A	A	36954950	1	1	61	0	1	0	0	0	0	0	0	0	1499	870	30	3		3	BPI	20	36954950	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	84741	36954950	26070570	6588	74833											
RALGAPB	57148	broad.mit.edu	37	chr20	37137925	37137925	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaatcatgctgtaagtctCttgtttgaattcagaaggtg	11	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37137925	G	G	37137925	1	3	61	0	1	0	0	0	0	0	0	0	13123	928	32	4		4	RALGAPB	20	37137925	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	182975	37137925	25887595	6589	74834											
PPP1R16B	26051	broad.mit.edu	37	chr20	37535753	37535753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttatcaatgttttgatGggtagagggagaaatagata	13	2	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37535753	T	T	37535753	1	4	61	0	1	0	0	0	0	0	0	0	12467	1363	47	2		2	PPP1R16B	20	37535753	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	397828	37535753	25489767	6590	74835											
PPP1R16B	26051	broad.mit.edu	37	chr20	37546646	37546646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacggaaattcatagattGggggttccccaaaggaaaac	11	7	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37546646	T	T	37546646	1	4	61	0	1	0	0	0	0	0	0	0	12467	1363	47	2		2	PPP1R16B	20	37546646	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10893	37546646	25478874	6591	74836											
PLCG1	5335	broad.mit.edu	37	chr20	39790522	39790522	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttctttcctggagccaggCcctgtctagccccaggaggt	12	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39790522	T	T	39790522	1	4	61	0	1	0	0	0	0	0	0	0	12130	754	26	4		4	PLCG1	20	39790522	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2243876	39790522	23234998	6592	74837											
PLCG1	5335	broad.mit.edu	37	chr20	39797825	39797825	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggagagggaggtaagaccaGaaccacctgagtaacagcat	13	9	0	4	rs35010470		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39797825	C	C	39797825	1	2	61	0	1	0	0	0	0	0	0	0	12130	957	33	4		4	PLCG1	20	39797825	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7303	39797825	23227695	6593	74838											
LPIN3	64900	broad.mit.edu	37	chr20	39980941	39980942	+	Intron	INS	-	G	G													gcagggaagactgtgagggtINSggggcagtagaggtgagagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39980942	G	G	39980941	6	5	61	0	1	1	1	0	0	0	0	0	9007	1711	59	0		0	LPIN3	20	39980941	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	183116	39980941	23044579	6594	74839											
EMILIN3	90187	broad.mit.edu	37	chr20	39991417	39991417	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctagaagctgcaccttGgtctgaagagtgttgctcac	11	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39991417	C	C	39991417	2	2	61	1	0	0	0	0	0	0	0	1	5137	1335	47	4		4	EMILIN3	20	39991417	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10476	39991417	23034103	6595	74840											
CHD6	84181	broad.mit.edu	37	chr20	40033947	40033947	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgttctgaagtcctacCaggtccatcccagcaatcag	7	14	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40033947	T	T	40033947	2	4	61	1	0	0	0	0	0	0	0	1	3360	581	21	4		4	CHD6	20	40033947	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42530	40033947	22991573	6596	74841											
CHD6	84181	broad.mit.edu	37	chr20	40049655	40049655	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catggctaagttttcctcctCgttttcctcctcttcttcct	4	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40049655	A	A	40049655	4	1	61	1	0	0	0	0	0	1	0	0	3360	893	31	3	2555	3	CHD6	20	40049655	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	15708	40049655	22975865	6597	74842											
CHD6	84181	broad.mit.edu	37	chr20	40102043	40102043	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattgatccccaggcctccCgctctggtgcacagaagaaa	10	13	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40102043	A	A	40102043	2	1	61	1	0	0	0	0	0	0	0	1	3360	639	23	1		1	CHD6	20	40102043	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	52388	40102043	22923477	6598	74843											
PTPRT	11122	broad.mit.edu	37	chr20	40727285	40727285	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgaggccagaggctccagAgcctgccaaatagattatac	10	11	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40727285	C	C	40727285	1	2	61	0	1	0	0	0	0	0	0	0	12920	319	11	5		5	PTPRT	20	40727285	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	625242	40727285	22298235	6599	74844											
PTPRT	11122	broad.mit.edu	37	chr20	40743803	40743803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaacaagctggctctcatGgtggaccggctgcccacagc	11	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40743803	T	T	40743803	1	4	61	0	1	0	0	0	0	0	0	0	12920	1363	47	2		2	PTPRT	20	40743803	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	16518	40743803	22281717	6600	74845											
PTPRT	11122	broad.mit.edu	37	chr20	40766323	40766323	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctagacttaaaagtctGtgacttaaggggccacacaa	8	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40766323	A	A	40766323	1	1	61	0	1	0	0	0	0	0	0	0	12920	1392	48	4		4	PTPRT	20	40766323	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	22520	40766323	22259197	6601	74846											
PTPRT	11122	broad.mit.edu	37	chr20	40789862	40789862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatggggcctgagatgttGcatttcctacacgctcccag	13	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40789862	T	T	40789862	1	4	61	0	1	0	0	0	0	0	0	0	12920	1334	46	3		3	PTPRT	20	40789862	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23539	40789862	22235658	6602	74847											
PTPRT	11122	broad.mit.edu	37	chr20	40789875	40789875	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgttgcatttcctacacGctcccaggtgatactgaggc	10	11	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40789875	C	C	40789875	1	2	61	0	1	0	0	0	0	0	0	0	12920	1102	38	4		4	PTPRT	20	40789875	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13	40789875	22235645	6603	74848											
PTPRT	11122	broad.mit.edu	37	chr20	40935011	40935011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgagtgggtaagccccaggAgatggagtccactgaggact	16	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40935011	T	T	40935011	1	4	61	0	1	0	0	0	0	0	0	0	12920	319	11	5		5	PTPRT	20	40935011	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	145136	40935011	22090509	6604	74849											
PTPRT	11122	broad.mit.edu	37	chr20	40938718	40938718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaaaagacagatgtagGtaaaatgcaccctgaattaa	9	5	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40938718	T	T	40938718	1	4	61	0	1	0	0	0	0	0	0	0	12920	1276	44	3		3	PTPRT	20	40938718	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3707	40938718	22086802	6605	74850											
PTPRT	11122	broad.mit.edu	37	chr20	41371091	41371091	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttactggatgaggagaggtGgtgctgtactccacatagtc	14	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41371091	C	C	41371091	1	2	61	0	1	0	0	0	0	0	0	0	12920	1363	47	4		4	PTPRT	20	41371091	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	432373	41371091	21654429	6606	74851											
L3MBTL	26013	broad.mit.edu	37	chr20	42143549	42143549	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggaggccatccgatgcgGagatggaccgaggcggaggc	20	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42143549	T	T	42143549	1	4	61	0	1	0	0	0	0	0	0	0	8663	1189	41	3		3	L3MBTL	20	42143549	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	772458	42143549	20881971	6607	74852											
L3MBTL	26013	broad.mit.edu	37	chr20	42157866	42157866	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actaggcaaggataaggctgGatggaagctgggtcctctcc	14	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42157866	T	T	42157866	1	4	61	0	1	0	0	0	0	0	0	0	8663	1189	41	3		3	L3MBTL	20	42157866	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14317	42157866	20867654	6608	74853											
IFT52	51098	broad.mit.edu	37	chr20	42232298	42232298	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttatatgtaaatgccttataGatttgaaatatgtatttttc	5	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42232298	T	T	42232298	1	4	61	0	1	0	0	0	0	0	0	0	7631	957	33	3		3	IFT52	20	42232298	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	74432	42232298	20793222	6609	74854											
HNF4A	3172	broad.mit.edu	37	chr20	43057955	43057955	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttccagacctcataaaacTtaggctttatgatctgggac	7	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43057955	G	G	43057955	1	3	61	0	1	0	0	0	0	0	0	0	7320	1624	56	5		5	HNF4A	20	43057955	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	825657	43057955	19967565	6610	74855											
HNF4A	3172	broad.mit.edu	37	chr20	43058003	43058003	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttgagcaataaaagaccTtagggattatctggtttaat	10	4	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43058003	G	G	43058003	1	3	61	0	1	0	0	0	0	0	0	0	7320	1624	56	5		5	HNF4A	20	43058003	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	48	43058003	19967517	6611	74856											
PKIG	11142	broad.mit.edu	37	chr20	43240161	43240162	+	Intron	INS	-	T	T													ttctctccttctatatcaacINSttttttttttttttttgaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43240162	T	T	43240161	6	5	61	0	1	1	1	0	0	0	0	0	12070	580	20	0		0	PKIG	20	43240161	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	182158	43240161	19785359	6612	74857											
PKIG	11142	broad.mit.edu	37	chr20	43243376	43243376	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaggtccttggcactaCtgcatgccagaggccctctg	11	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43243376	T	T	43243376	1	4	61	0	1	0	0	0	0	0	0	0	12070	580	20	4		4	PKIG	20	43243376	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3215	43243376	19782144	6613	74858											
ADA	100	broad.mit.edu	37	chr20	43255112	43255112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactcagcctggttccagGggattggctccactttggag	12	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43255112	T	T	43255112	3	4	61	1	0	0	0	0	1	0	0	0	230	1232	43	2	780	2	ADA	20	43255112	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	11736	43255112	19770408	6614	74859											
PABPC1L	80336	broad.mit.edu	37	chr20	43541271	43541271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaaaattccctaaacttGctaatttctctcctcttcct	2	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43541271	T	T	43541271	1	4	61	0	1	0	0	0	0	0	0	0	11458	1334	46	3		3	PABPC1L	20	43541271	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	286159	43541271	19484249	6615	74860											
PABPC1L	80336	broad.mit.edu	37	chr20	43558917	43558917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatcacagcttgctaaacGggggtgcacactacatccct	8	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43558917	A	A	43558917	1	1	61	0	1	0	0	0	0	0	0	0	11458	1131	39	4		4	PABPC1L	20	43558917	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	17646	43558917	19466603	6616	74861											
WFDC5	149708	broad.mit.edu	37	chr20	43743821	43743821	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagaggaaagagaggggGtgtggagtgacaccgtgcct	19	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43743821	T	T	43743821	1	4	61	0	1	0	0	0	0	0	0	0	17481	1276	44	3		3	WFDC5	20	43743821	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	184904	43743821	19281699	6617	74862											
WFDC12	128488	broad.mit.edu	37	chr20	43752871	43752871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcggacttgaagcagcgtaCgttgtcagctgggcaaaccc	12	11	1	1	rs148261601	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43752871	A	A	43752871	3	1	61	1	0	0	0	0	1	0	0	0	17477	536	19	3	228	3	WFDC12	20	43752871	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9050	43752871	19272649	6618	74863											
WFDC8	90199	broad.mit.edu	37	chr20	44207955	44207955	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggctcctccctcatctgctCccctgcctggacactctgct	7	19	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44207955	A	A	44207955	1	1	61	0	1	0	0	0	0	0	0	0	17483	870	30	3		3	WFDC8	20	44207955	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	455084	44207955	18817565	6619	74864											
SLC12A5	57468	broad.mit.edu	37	chr20	44665475	44665475	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggagggaggatggctgggTggaaggagggatagtgccct	23	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44665475	A	A	44665475	1	1	61	0	1	0	0	0	0	0	0	0	14499	1711	59	5		5	SLC12A5	20	44665475	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	457520	44665475	18360045	6620	74865											
NCOA5	57727	broad.mit.edu	37	chr20	44695640	44695640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggtgctaaacaggagcCtgaatttctctgactcttct	9	9	3	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44695640	A	A	44695640	1	1	61	0	1	0	0	0	0	0	0	0	10327	696	24	2		2	NCOA5	20	44695640	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	30165	44695640	18329880	6621	74866											
CD40	958	broad.mit.edu	37	chr20	44751503	44751503	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagaggcagaggaagcagaGgctccaacctatgtcggtat	13	10	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44751503	A	A	44751503	1	1	61	0	1	0	0	0	0	0	0	0	3045	1015	35	4		4	CD40	20	44751503	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	55863	44751503	18274017	6622	74867											
CDH22	64405	broad.mit.edu	37	chr20	44815306	44815306	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaagcggtgcccgccttgGggctcgtctctgtccaccac	12	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44815306	T	T	44815306	2	4	61	1	0	0	0	0	0	0	0	1	3137	1219	43	2		2	CDH22	20	44815306	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	63803	44815306	18210214	6623	74868											
CDH22	64405	broad.mit.edu	37	chr20	44815719	44815719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttaaccaagctggtacaaGgaccagaactgggaacattt	11	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44815719	T	T	44815719	1	4	61	0	1	0	0	0	0	0	0	0	3137	1015	35	2		2	CDH22	20	44815719	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	413	44815719	18209801	6624	74869											
CDH22	64405	broad.mit.edu	37	chr20	44846967	44846967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgactcccctgggcaacCagtcccacttttggggcctc	11	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44846967	A	A	44846967	1	1	61	0	1	0	0	0	0	0	0	0	3137	609	21	2		2	CDH22	20	44846967	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31248	44846967	18178553	6625	74870											
CDH22	64405	broad.mit.edu	37	chr20	44850045	44850045	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccggaggagcagctgacTggaaggtccaagatggctca	14	9	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44850045	A	A	44850045	1	1	61	0	1	0	0	0	0	0	0	0	3137	1595	55	5		5	CDH22	20	44850045	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3078	44850045	18175475	6626	74871											
CDH22	64405	broad.mit.edu	37	chr20	44852722	44852722	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctggtgtcaaactcctggCctcaagtgatccacccgctt	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44852722	G	G	44852722	1	3	61	0	1	0	0	0	0	0	0	0	3137	754	26	4		4	CDH22	20	44852722	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2677	44852722	18172798	6627	74872											
CDH22	64405	broad.mit.edu	37	chr20	44884198	44884198	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagggtggagccctggccctCccatcctcacctctccctcc	9	20	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44884198	G	G	44884198	1	3	61	0	1	0	0	0	0	0	0	0	3137	870	30	4		4	CDH22	20	44884198	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	31476	44884198	18141322	6628	74873											
CDH22	64405	broad.mit.edu	37	chr20	44889375	44889375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatttctcaatgctctggCaacatcactgccaaggctgt	8	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44889375	A	A	44889375	1	1	61	0	1	0	0	0	0	0	0	0	3137	725	25	3		3	CDH22	20	44889375	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5177	44889375	18136145	6629	74874											
CDH22	64405	broad.mit.edu	37	chr20	44938568	44938568	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctcttggtttatttcCcttcattgatctcttccagc	4	13	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44938568	A	A	44938568	1	1	61	0	1	0	0	0	0	0	0	0	3137	638	22	2		2	CDH22	20	44938568	5'Flank	SNP	C	TCGA-17-Z031-01A-01W-0746-08	49193	44938568	18086952	6630	74875											
SLC35C2	51006	broad.mit.edu	37	chr20	44983661	44983661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccctgccctgcctccgcCctgcctgtgccggggttcct	12	20	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44983661	A	A	44983661	1	1	61	0	1	0	0	0	0	0	0	0	14694	638	22	2		2	SLC35C2	20	44983661	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	45093	44983661	18041859	6631	74876											
ELMO2	63916	broad.mit.edu	37	chr20	45003281	45003281	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctggattgatgtggttcTagagaaataaagacacccaa	11	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45003281	C	C	45003281	5	2	61	1	0	0	0	0	0	0	1	0	5108	1536	53	5	1134	5	ELMO2	20	45003281	Splice_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	19620	45003281	18022239	6632	74877											
EYA2	2139	broad.mit.edu	37	chr20	45645127	45645127	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtggggagagactaacgaTaaagtcggcaaataagccag	13	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45645127	A	A	45645127	1	1	61	0	1	0	0	0	0	0	0	0	5372	1421	49	5		5	EYA2	20	45645127	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	641846	45645127	17380393	6633	74878											
ZMYND8	23613	broad.mit.edu	37	chr20	45878004	45878004	+	Intron	DEL	A	-	-													gataacaatgatactgctggAaaaaaaaaacaaaaccaaag							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45878004	-	-	45878004	6	5	61	0	1	1	0	1	0	0	0	0	17837	261	9	0		0	ZMYND8	20	45878004	Intron	DEL	A	TCGA-17-Z031-01A-01W-0746-08	232877	45878004	17147516	6634	74879											
SULF2	55959	broad.mit.edu	37	chr20	46307626	46307626	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggggggtggggagcggtAggtgggcagcagtttgtggg	25	4	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46307626	G	G	46307626	1	3	61	0	1	0	0	0	0	0	0	0	15489	435	15	5		5	SULF2	20	46307626	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	429622	46307626	16717894	6635	74880											
SULF2	55959	broad.mit.edu	37	chr20	46359014	46359014	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttagaacatgatgcagaAgggcagagggcccgccacca	12	10	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46359014	G	G	46359014	1	3	61	0	1	0	0	0	0	0	0	0	15489	87	3	5		5	SULF2	20	46359014	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	51388	46359014	16666506	6636	74881											
PREX1	57580	broad.mit.edu	37	chr20	47244251	47244251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccagaagcccaaggaccCagaagctaagatccttgctc	10	14	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47244251	A	A	47244251	1	1	61	0	1	0	0	0	0	0	0	0	12582	609	21	2		2	PREX1	20	47244251	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	885237	47244251	15781269	6637	74882											
PREX1	57580	broad.mit.edu	37	chr20	47256470	47256470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgagggccagggaagggaCggaggtagtgttggagaacg	20	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47256470	A	A	47256470	1	1	61	0	1	0	0	0	0	0	0	0	12582	551	19	3		3	PREX1	20	47256470	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	12219	47256470	15769050	6638	74883											
PREX1	57580	broad.mit.edu	37	chr20	47258696	47258696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcaccttggactggctAtcccctcaccttgtaagctg	9	14	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47258696	G	G	47258696	1	3	61	0	1	0	0	0	0	0	0	0	12582	464	16	5		5	PREX1	20	47258696	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2226	47258696	15766824	6639	74884											
PREX1	57580	broad.mit.edu	37	chr20	47266655	47266656	+	Missense_Mutation	DNP	GG	AA	AA													aggttgatgtggcaattggtGgggcagaagtccaggccaca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47266656	AA	AA	47266655	3	1	61	1	0	0	0	0	1	0	0	0	12582	1335	47	4	2140	4	PREX1	20	47266655	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	7959	47266655	15758865	6640	74885											
PREX1	57580	broad.mit.edu	37	chr20	47274840	47274840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccccaccgtggcccccaCaggaccatgacctcgtccca	8	21	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47274840	A	A	47274840	1	1	61	0	1	0	0	0	0	0	0	0	12582	493	17	3		3	PREX1	20	47274840	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8185	47274840	15750680	6641	74886											
PREX1	57580	broad.mit.edu	37	chr20	47309257	47309257	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccatgacttcagtgttgattCgacccctgaagatgtagagg	11	9	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47309257	G	G	47309257	3	3	61	1	0	0	0	0	1	0	0	0	12582	884	31	4	4122	4	PREX1	20	47309257	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34417	47309257	15716263	6642	74887											
PREX1	57580	broad.mit.edu	37	chr20	47315661	47315661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatccattactcatccagTggtaaggtttctcaccacac	6	13	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47315661	A	A	47315661	1	1	61	0	1	0	0	0	0	0	0	0	12582	1711	59	5		5	PREX1	20	47315661	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	6404	47315661	15709859	6643	74888											
STAU1	6780	broad.mit.edu	37	chr20	47751591	47751591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatctccagagccctgggCagcattttccagcaagatgt	10	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47751591	A	A	47751591	1	1	61	0	1	0	0	0	0	0	0	0	15390	725	25	3		3	STAU1	20	47751591	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	435930	47751591	15273929	6644	74889											
KCNB1	3745	broad.mit.edu	37	chr20	48098276	48098276	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagatggagtgaccagtgCcacatgggaaaagtctgagg	14	6	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48098276	G	G	48098276	1	3	61	0	1	0	0	0	0	0	0	0	8082	754	26	4		4	KCNB1	20	48098276	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	346685	48098276	14927244	6645	74890											
PTGIS	5740	broad.mit.edu	37	chr20	48129564	48129564	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatctggctcatcccaaagTcactgattgttctcccacag	7	13	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48129564	A	A	48129564	1	1	61	0	1	0	0	0	0	0	0	0	12858	1682	58	5		5	PTGIS	20	48129564	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	31288	48129564	14895956	6646	74891											
ADNP	23394	broad.mit.edu	37	chr20	49510781	49510781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttgctctacactgtcaGcctgcttaggtttaaggcca	9	12	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49510781	T	T	49510781	3	4	61	1	0	0	0	0	1	0	0	0	323	971	34	3	2842	3	ADNP	20	49510781	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1381217	49510781	13514739	6647	74892											
MOCS3	27304	broad.mit.edu	37	chr20	49576693	49576693	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagagttagaccctttaacAgttcgggatgttgtgggggg	15	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49576693	G	G	49576693	2	3	61	1	0	0	0	0	0	0	0	1	9786	175	7	5		5	MOCS3	20	49576693	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	65912	49576693	13448827	6648	74893											
ATP9A	10079	broad.mit.edu	37	chr20	50346334	50346334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaatgcatgtatttgtgaTggaaaaaagaaaagagcacg	10	5	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50346334	C	C	50346334	1	2	61	0	1	0	0	0	0	0	0	0	1202	1479	51	5		5	ATP9A	20	50346334	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	769641	50346334	12679186	6649	74894											
SALL4	57167	broad.mit.edu	37	chr20	50406738	50406738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccatcagcgaggatgagtCgttggtcaagccatcgctct	11	12	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50406738	A	A	50406738	3	1	61	1	0	0	0	0	1	0	0	0	13924	884	31	3	889	3	SALL4	20	50406738	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	60404	50406738	12618782	6650	74895											
TSHZ2	128553	broad.mit.edu	37	chr20	51601111	51601111	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggtggccggagcagacgggGagggtgagcagggagggtaa	24	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51601111	C	C	51601111	1	2	61	0	1	0	0	0	0	0	0	0	16749	1189	41	4		4	TSHZ2	20	51601111	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1194373	51601111	11424409	6651	74896											
TSHZ2	128553	broad.mit.edu	37	chr20	51623735	51623735	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagttgaccaggctgaAgtggcctggtggagtaagga	18	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51623735	T	T	51623735	1	4	61	0	1	0	0	0	0	0	0	0	16749	87	3	5		5	TSHZ2	20	51623735	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	22624	51623735	11401785	6652	74897											
TSHZ2	128553	broad.mit.edu	37	chr20	51682490	51682490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaatctgggggtcataCgtggttctcagttatcacct	10	10	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51682490	T	T	51682490	1	4	61	0	1	0	0	0	0	0	0	0	16749	551	19	4		4	TSHZ2	20	51682490	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	58755	51682490	11343030	6653	74898											
TSHZ2	128553	broad.mit.edu	37	chr20	51882709	51882709	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgggggtcaagggtggagGaggacacagggagtccggga	22	5	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51882709	T	T	51882709	1	4	61	0	1	0	0	0	0	0	0	0	16749	1189	41	3		3	TSHZ2	20	51882709	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	200219	51882709	11142811	6654	74899											
TSHZ2	128553	broad.mit.edu	37	chr20	51892585	51892585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaaaataagaaatgtacCgtctcatccaaggagagagt	9	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51892585	A	A	51892585	1	1	61	0	1	0	0	0	0	0	0	0	16749	667	23	1		1	TSHZ2	20	51892585	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	9876	51892585	11132935	6655	74900											
BCAS1	8537	broad.mit.edu	37	chr20	52570011	52570011	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggactgctgccgcttcTcaggtctcttttggagcttg	12	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52570011	C	C	52570011	3	2	61	1	0	0	0	0	1	0	0	0	1355	1551	54	5	122	5	BCAS1	20	52570011	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	677426	52570011	10455509	6656	74901											
DOK5	55816	broad.mit.edu	37	chr20	53208123	53208123	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgatgttttattcctgggGattttagactaaccttttgt	8	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53208123	T	T	53208123	1	4	61	0	1	0	0	0	0	0	0	0	4740	1189	41	3		3	DOK5	20	53208123	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	638112	53208123	9817397	6657	74902											
CBLN4	140689	broad.mit.edu	37	chr20	54573438	54573438	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatatactgaaacagacacAcacaaataatctgtgaaatt	4	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54573438	G	G	54573438	1	3	61	0	1	0	0	0	0	0	0	0	2733	174	6	5		5	CBLN4	20	54573438	3'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1365315	54573438	8452082	6658	74903											
CSTF1	1477	broad.mit.edu	37	chr20	54974030	54974030	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcccaacaggaagctgAaatgttacgttccatctctt	7	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54974030	G	G	54974030	3	3	61	1	0	0	0	0	1	0	0	0	4017	246	9	5	667	5	CSTF1	20	54974030	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	400592	54974030	8051490	6659	74904											
CASS4	57091	broad.mit.edu	37	chr20	55012178	55012178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtagcagtcactggccaCggtgctaactgcaaattctc	11	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55012178	A	A	55012178	1	1	61	0	1	0	0	0	0	0	0	0	2709	551	19	3		3	CASS4	20	55012178	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	38148	55012178	8013342	6660	74905											
CASS4	57091	broad.mit.edu	37	chr20	55027392	55027392	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcatggttctccagacGgacaacttccccatctcctg	6	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55027392	T	T	55027392	3	4	61	1	0	0	0	0	1	0	0	0	2709	1116	39	1	1178	1	CASS4	20	55027392	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15214	55027392	7998128	6661	74906											
BMP7	655	broad.mit.edu	37	chr20	55748466	55748466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacgccaggctcacgacCcaaggtggaagcctcagacc	10	17	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55748466	A	A	55748466	1	1	61	0	1	0	0	0	0	0	0	0	1471	638	22	2		2	BMP7	20	55748466	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	721074	55748466	7277054	6662	74907											
ZBP1	81030	broad.mit.edu	37	chr20	56179863	56179863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggatcagcttcatgggcaCgtggcctgggcatttccaca	14	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56179863	A	A	56179863	1	1	61	0	1	0	0	0	0	0	0	0	17647	551	19	3		3	ZBP1	20	56179863	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	431397	56179863	6845657	6663	74908											
ZBP1	81030	broad.mit.edu	37	chr20	56191317	56191317	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccagggctggacaaggccAgctctgcaggaccctcgcct	12	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56191317	T	T	56191317	3	4	61	1	0	0	0	0	1	0	0	0	17647	188	7	5	1152	5	ZBP1	20	56191317	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	11454	56191317	6834203	6664	74909											
GNAS	2778	broad.mit.edu	37	chr20	57474928	57474928	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaaacagcttctgtggccGgggaggggaggggcaaagat	18	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57474928	C	C	57474928	1	2	61	0	1	0	0	0	0	0	0	0	6574	1131	39	4		4	GNAS	20	57474928	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1283611	57474928	5550592	6665	74910											
TUBB1	81027	broad.mit.edu	37	chr20	57594367	57594367	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccaaaagcatgacaggcaGaaagcagagaagggccagga	13	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57594367	A	A	57594367	1	1	61	0	1	0	0	0	0	0	0	0	16879	957	33	4		4	TUBB1	20	57594367	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	119439	57594367	5431153	6666	74911											
ZNF831	128611	broad.mit.edu	37	chr20	57766770	57766770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagggcaggggcgagagCaggtgccaggggatgcacga	20	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57766770	A	A	57766770	3	1	61	1	0	0	0	0	1	0	0	0	18314	709	25	3	698	3	ZNF831	20	57766770	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	172403	57766770	5258750	6667	74912											
ZNF831	128611	broad.mit.edu	37	chr20	57767137	57767137	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcgctccgacagcgcggagCagccgcatgcgccctgcagc	14	18	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57767137	G	G	57767137	3	3	61	1	0	0	0	0	1	0	0	0	18314	711	25	4	1065	4	ZNF831	20	57767137	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	367	57767137	5258383	6668	74913											
ZNF831	128611	broad.mit.edu	37	chr20	57769045	57769045	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggacccctctttctcccAgcccagcctcaggcccctcc	8	21	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57769045	G	G	57769045	3	3	61	1	0	0	0	0	1	0	0	0	18314	188	7	5	2973	5	ZNF831	20	57769045	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1908	57769045	5256475	6669	74914											
ZNF831	128611	broad.mit.edu	37	chr20	57828336	57828336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagaaagcccattaagaCaaacaaataactcaaaacat	4	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57828336	A	A	57828336	1	1	61	0	1	0	0	0	0	0	0	0	18314	493	17	3		3	ZNF831	20	57828336	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	59291	57828336	5197184	6670	74915											
EDN3	1908	broad.mit.edu	37	chr20	57876461	57876461	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccctcaatctgccttctGcaggattcgtgccttgctcc	8	16	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57876461	T	T	57876461	1	4	61	0	1	0	0	0	0	0	0	0	4958	1334	46	3		3	EDN3	20	57876461	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	48125	57876461	5149059	6671	74916											
PHACTR3	116154	broad.mit.edu	37	chr20	58260786	58260786	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtcagcccattatccttcGggcctcaggttgaatgtcac	10	13	3	1	rs140626570	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58260786	C	C	58260786	1	2	61	0	1	0	0	0	0	0	0	0	11906	1131	39	4		4	PHACTR3	20	58260786	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	384325	58260786	4764734	6672	74917											
PHACTR3	116154	broad.mit.edu	37	chr20	58318056	58318056	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggggtccaggctttggGgggatcactggtgacccctt	15	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58318056	A	A	58318056	1	1	61	0	1	0	0	0	0	0	0	0	11906	1247	43	4		4	PHACTR3	20	58318056	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	57270	58318056	4707464	6673	74918											
PHACTR3	116154	broad.mit.edu	37	chr20	58381038	58381038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgacaagccagccctcCgctaagacctgtctcctttg	7	16	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58381038	A	A	58381038	1	1	61	0	1	0	0	0	0	0	0	0	11906	667	23	1		1	PHACTR3	20	58381038	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	62982	58381038	4644482	6674	74919											
SYCP2	10388	broad.mit.edu	37	chr20	58443526	58443526	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttttttgggaagcaagttTgctctcctttctcctttctc	7	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58443526	A	A	58443526	2	1	61	1	0	0	0	0	0	0	0	1	15551	1799	63	5		5	SYCP2	20	58443526	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	62488	58443526	4581994	6675	74920											
CDH4	1002	broad.mit.edu	37	chr20	60416915	60416915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattggcactgacccccatgGcgcctttatgatggaaacag	10	11	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60416915	T	T	60416915	1	4	61	0	1	0	0	0	0	0	0	0	3142	1218	42	3		3	CDH4	20	60416915	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1973389	60416915	2608605	6676	74921											
LAMA5	3911	broad.mit.edu	37	chr20	60889747	60889747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggtgcgcagctgcaccCctgagcgcccgttgaacttc	14	14	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60889747	A	A	60889747	3	1	61	1	0	0	0	0	1	0	0	0	8681	623	22	2	2936	2	LAMA5	20	60889747	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	472832	60889747	2135773	6677	74922											
COL9A3	1299	broad.mit.edu	37	chr20	61468494	61468494	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggcacccgggtccattggtCggcccggtccagctggcccc	14	17	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61468494	G	G	61468494	3	3	61	1	0	0	0	0	1	0	0	0	3741	875	31	4	1781	4	COL9A3	20	61468494	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	578747	61468494	1557026	6678	74923											
GMEB2	26205	broad.mit.edu	37	chr20	62224195	62224195	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccacagtgccaaaatctagCaggtcagcctcagagcgccc	9	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62224195	G	G	62224195	1	3	61	0	1	0	0	0	0	0	0	0	6552	725	25	4		4	GMEB2	20	62224195	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	755701	62224195	801325	6679	74924											
ZGPAT	84619	broad.mit.edu	37	chr20	62366088	62366088	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgtggactctgggacCtgcagctctgcctttgctgg	14	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62366088	A	A	62366088	2	1	61	1	0	0	0	0	0	0	0	1	17800	668	24	2		2	ZGPAT	20	62366088	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	141893	62366088	659432	6680	74925											
TPD52L2	7165	broad.mit.edu	37	chr20	62514230	62514230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggagtgaggtgaggtGttggaggtgctacaggaagc	20	5	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62514230	T	T	62514230	1	4	61	0	1	0	0	0	0	0	0	0	16523	1392	48	3		3	TPD52L2	20	62514230	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	148142	62514230	511290	6681	74926											
TPTE	7179	broad.mit.edu	37	chr21	10919357	10919357	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgtgactggcgccagcTgaaatactgttgcagcaatg	12	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10919357	A	A	10919357	1	1	61	0	1	0	0	0	0	0	0	0	16554	1595	55	5		5	TPTE	21	10919357	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08		10919357	37210538	6682	74927											
TPTE	7179	broad.mit.edu	37	chr21	10952930	10952930	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacccaaatgcaaaggatgaTacaattgaatgcacaatttt	6	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10952930	C	C	10952930	2	2	61	1	0	0	0	0	0	0	0	1	16554	1393	49	5		5	TPTE	21	10952930	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	33573	10952930	37176965	6683	74928											
BAGE2	85319	broad.mit.edu	37	chr21	11047607	11047607	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccgattgtctaaaaagtaaGatagcattaatgatggctta	8	6	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11047607	T	T	11047607	1	4	61	0	1	0	0	0	0	0	0	0	1297	957	33	3		3	BAGE2	21	11047607	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	94677	11047607	37082288	6684	74929											
BAGE2	85319	broad.mit.edu	37	chr21	11050982	11050982	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccattttttgaaggtttggtCaatcctatcaatttctctct	5	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11050982	T	T	11050982	1	4	61	0	1	0	0	0	0	0	0	0	1297	841	29	4		4	BAGE2	21	11050982	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3375	11050982	37078913	6685	74930											
BAGE2	85319	broad.mit.edu	37	chr21	11067160	11067160	+	Intron	SNP	T	C	C													ctctggggagttaggaatagTaaccaacaggaggcttgaat							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11067160	C	C	11067160	1	2	61	0	1	0	0	0	0	0	0	0	1297	1653	57	5		5	BAGE2	21	11067160	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	16178	11067160	37062735	6686	74931	336	2									
BAGE2	85319	broad.mit.edu	37	chr21	11067162	11067162	+	Intron	SNP	A	G	G													ctggggagttaggaatagtaAccaacaggaggcttgaatgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11067162	G	G	11067162	1	3	61	0	1	0	0	0	0	0	0	0	1297	58	2	5		5	BAGE2	21	11067162	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2	11067162	37062733	6687	74932	336	2									
BAGE2	85319	broad.mit.edu	37	chr21	11094575	11094575	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaggaacatccttgctctCtcaccctcacttgtacctag	6	14	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11094575	G	G	11094575	1	3	61	0	1	0	0	0	0	0	0	0	1297	928	32	4		4	BAGE2	21	11094575	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	27413	11094575	37035320	6688	74933											
SAMSN1	64092	broad.mit.edu	37	chr21	15918462	15918462	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgtatgtgttcaaacacAcatatgtgtttattttctat	5	6	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15918462	G	G	15918462	1	3	61	0	1	0	0	0	0	0	0	0	13941	174	6	5		5	SAMSN1	21	15918462	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4823887	15918462	32211433	6689	74934											
NRIP1	8204	broad.mit.edu	37	chr21	16340033	16340033	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatgactgagggcatatcCttgctccttgaggctctgcc	10	12	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16340033	T	T	16340033	3	4	61	1	0	0	0	0	1	0	0	0	10747	690	24	4	2999	4	NRIP1	21	16340033	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	421571	16340033	31789862	6690	74935											
USP25	29761	broad.mit.edu	37	chr21	17135192	17135192	+	Intron	SNP	G	T	T													ttgagaatataatgattttgGgtttttcctccctctagcac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17135192	T	T	17135192	1	4	61	0	1	0	0	0	0	0	0	0	17182	1247	43	2		2	USP25	21	17135192	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	795159	17135192	30994703	6691	74936	337	2									
USP25	29761	broad.mit.edu	37	chr21	17135194	17135194	+	Intron	SNP	T	G	G													gagaatataatgattttgggTttttcctccctctagcacca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17135194	G	G	17135194	1	3	61	0	1	0	0	0	0	0	0	0	17182	1740	60	5		5	USP25	21	17135194	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2	17135194	30994701	6692	74937	337	2									
CHODL	140578	broad.mit.edu	37	chr21	19629135	19629135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagcaattcccagtaccGgtgagtatggatcttgagca	12	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19629135	T	T	19629135	3	4	61	1	0	0	0	0	1	0	0	0	3395	1130	39	1	395	1	CHODL	21	19629135	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2493941	19629135	28500760	6693	74938											
NCAM2	4685	broad.mit.edu	37	chr21	22664427	22664427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctttctttccagatcGgttcgctatgttagcaaaca	7	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22664427	T	T	22664427	3	4	61	1	0	0	0	0	1	0	0	0	10298	1116	39	1	503	1	NCAM2	21	22664427	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3035292	22664427	25465468	6694	74939											
APP	351	broad.mit.edu	37	chr21	27254076	27254076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctggggtgacagcggCgtcaacctgaaaaacaagag	12	11	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27254076	A	A	27254076	3	1	61	1	0	0	0	0	1	0	0	0	817	768	27	3	98	3	APP	21	27254076	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4589649	27254076	20875819	6695	74940											
APP	351	broad.mit.edu	37	chr21	27425354	27425354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagggggtacacgggaaCtctattttctgttcgatttt	12	7	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27425354	A	A	27425354	1	1	61	0	1	0	0	0	0	0	0	0	817	580	20	3		3	APP	21	27425354	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	171278	27425354	20704541	6696	74941											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296937	28296937	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccacgtcagtgtaacccTtactggaagtaggaatgttc	9	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28296937	A	A	28296937	3	1	61	1	0	0	0	0	1	0	0	0	269	1609	56	5	568	5	ADAMTS5	21	28296937	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	871583	28296937	19832958	6697	74942											
BACH1	571	broad.mit.edu	37	chr21	30701774	30701774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgactataattataaaatacAgcaataattagtaatattta	3	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30701774	T	T	30701774	1	4	61	0	1	0	0	0	0	0	0	0	1288	203	7	5		5	BACH1	21	30701774	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	2404837	30701774	17428121	6698	74943											
GRIK1	2897	broad.mit.edu	37	chr21	30959695	30959695	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaacttaccttgcaatcAcaaagagtacacagctgact	5	12	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30959695	G	G	30959695	3	3	61	1	0	0	0	0	1	0	0	0	6839	159	6	5	1156	5	GRIK1	21	30959695	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	257921	30959695	17170200	6699	74944											
GRIK1	2897	broad.mit.edu	37	chr21	31204399	31204399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaacccagcaagggagtGgttaaatcttaaagctccaa	8	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31204399	T	T	31204399	1	4	61	0	1	0	0	0	0	0	0	0	6839	1363	47	2		2	GRIK1	21	31204399	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	244704	31204399	16925496	6700	74945											
CLDN17	26285	broad.mit.edu	37	chr21	31538609	31538609	+	Silent	SNP	G	A	A													gctttggccctctcgttagaGcctgtgcactggacctgctt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31538609	A	A	31538609	2	1	61	1	0	0	0	0	0	0	0	1	3509	958	34	4		4	CLDN17	21	31538609	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	334210	31538609	16591286	6701	74946	338	2									
CLDN17	26285	broad.mit.edu	37	chr21	31538616	31538616	+	Missense_Mutation	SNP	C	A	A													ccctctcgttagagcctgtgCactggacctgcttcatgcca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31538616	A	A	31538616	3	1	61	1	0	0	0	0	1	0	0	0	3509	710	25	3	358	3	CLDN17	21	31538616	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7	31538616	16591279	6702	74947	338	2									
CLDN17	26285	broad.mit.edu	37	chr21	31538712	31538712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggctgtttccagggcaGgcgggagagccaacaaggag	17	11	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31538712	T	T	31538712	3	4	61	1	0	0	0	0	1	0	0	0	3509	1000	35	2	454	2	CLDN17	21	31538712	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	96	31538712	16591183	6703	74948											
CLDN8	9073	broad.mit.edu	37	chr21	31588216	31588216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaccaccaagaaacagccCagcgatttctaaggcatggg	9	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31588216	A	A	31588216	3	1	61	1	0	0	0	0	1	0	0	0	3523	594	21	2	653	2	CLDN8	21	31588216	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	49504	31588216	16541679	6704	74949											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654970	31654970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgatggggagttgcagGgcacagaggagtttgacggg	19	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31654970	T	T	31654970	3	4	61	1	0	0	0	0	1	0	0	0	8614	1232	43	2	487	2	KRTAP24-1	21	31654970	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	66754	31654970	16474925	6705	74950											
KRTAP13-1	140258	broad.mit.edu	37	chr21	31768257	31768257	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agattactaagttgcttataTgaaatgtgggagcttaaatg	10	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768257	A	A	31768257	1	1	61	0	1	0	0	0	0	0	0	0	8593	1479	51	5		5	KRTAP13-1	21	31768257	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	113287	31768257	16361638	6706	74951											
KRTAP19-1	337882	broad.mit.edu	37	chr21	31852692	31852693	+	5'Flank	DNP	CC	AG	AG													caagatcctgagtgtgaatgCcagcatgtataggaggttta							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	31852693	AG	AG	31852692	1	1	61	0	1	0	0	0	0	0	0	0	8599	754	26	3		3	KRTAP19-1	21	31852692	5'Flank	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	84435	31852692	16277203	6707	74952											
KRTAP19-2	337969	broad.mit.edu	37	chr21	31859778	31859778	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggcaaggtcctgagtGtgaatatagcatgtttaggg	13	7	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31859778	T	T	31859778	1	4	61	0	1	0	0	0	0	0	0	0	8600	1392	48	3		3	KRTAP19-2	21	31859778	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7086	31859778	16270117	6708	74953											
KRTAP6-2	337967	broad.mit.edu	37	chr21	31971052	31971052	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagccacagccacagaagaAgcgggagccgtagccatgac	12	12	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31971052	C	C	31971052	3	2	61	1	0	0	0	0	1	0	0	0	8642	72	3	5	49	5	KRTAP6-2	21	31971052	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	111274	31971052	16158843	6709	74954											
KRTAP8-1	337879	broad.mit.edu	37	chr21	32185351	32185351	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggggatttcagccaatcagTagagagcaaatggcgagtat	13	7	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32185351	A	A	32185351	3	1	61	1	0	0	0	0	1	0	0	0	8644	1638	57	5	7	5	KRTAP8-1	21	32185351	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	214299	32185351	15944544	6710	74955											
TIAM1	7074	broad.mit.edu	37	chr21	32617896	32617897	+	Nonsense_Mutation	DNP	CC	AA	AA													cgcctgcacaatgctgttctCcacccagacggcgtgtttgg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32617897	AA	AA	32617896	4	1	61	1	0	0	0	0	0	1	0	0	16013	864	30	3	3375	3	TIAM1	21	32617896	Nonsense_Mutation	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	432545	32617896	15511999	6711	74956											
TIAM1	7074	broad.mit.edu	37	chr21	32617977	32617977	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaaaatagcgtgcatcCtgaggaaacagaacaggggt	13	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32617977	A	A	32617977	5	1	61	1	0	0	0	0	0	0	1	0	16013	695	24	2	3456	2	TIAM1	21	32617977	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	81	32617977	15511918	6712	74957											
SYNJ1	8867	broad.mit.edu	37	chr21	34003353	34003353	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaagccttagaggccaaggtCgtgaaaggatctactggagg	15	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34003353	G	G	34003353	2	3	61	1	0	0	0	0	0	0	0	1	15571	871	31	4		4	SYNJ1	21	34003353	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1385376	34003353	14126542	6713	74958											
SLC5A3	6526	broad.mit.edu	37	chr21	35467934	35467934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggtggatctgtattcggGtgccctttttatccaggagt	12	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35467934	T	T	35467934	3	4	61	1	0	0	0	0	1	0	0	0	14780	1261	44	3	439	3	SLC5A3	21	35467934	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1464581	35467934	12661961	6714	74959											
RUNX1	861	broad.mit.edu	37	chr21	36231898	36231898	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggggacacgatagagaacAaaacagaatgaggttggtgg	16	4	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36231898	G	G	36231898	1	3	61	0	1	0	0	0	0	0	0	0	13857	145	5	5		5	RUNX1	21	36231898	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	763964	36231898	11897997	6715	74960											
RUNX1	861	broad.mit.edu	37	chr21	36623902	36623902	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgtggagctgcatagggtCaggaacatcagcctaatcct	12	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36623902	A	A	36623902	1	1	61	0	1	0	0	0	0	0	0	0	13857	841	29	3		3	RUNX1	21	36623902	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	392004	36623902	11505993	6716	74961											
RUNX1	861	broad.mit.edu	37	chr21	36936757	36936757	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggcaataagacattaaaAcccaaggactctgtttgcct	7	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36936757	C	C	36936757	1	2	61	0	1	0	0	0	0	0	0	0	13857	58	2	5		5	RUNX1	21	36936757	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	312855	36936757	11193138	6717	74962											
MORC3	23515	broad.mit.edu	37	chr21	37710217	37710217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagcggagcatgttgttGttccaatagtggcattcaac	10	7	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37710217	T	T	37710217	3	4	61	1	0	0	0	0	1	0	0	0	9797	1377	48	3	447	3	MORC3	21	37710217	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	773460	37710217	10419678	6718	74963											
KCNJ6	3763	broad.mit.edu	37	chr21	39213084	39213084	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatctaattgccatttacAgctatatctctcttccttct	3	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39213084	T	T	39213084	1	4	61	0	1	0	0	0	0	0	0	0	8125	203	7	5		5	KCNJ6	21	39213084	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1502867	39213084	8916811	6719	74964											
KCNJ6	3763	broad.mit.edu	37	chr21	39213179	39213179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagttatattatcagtcaGtcactgaaaagagattttta	7	5	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39213179	A	A	39213179	1	1	61	0	1	0	0	0	0	0	0	0	8125	1044	36	4		4	KCNJ6	21	39213179	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	95	39213179	8916716	6720	74965											
ERG	2078	broad.mit.edu	37	chr21	39795437	39795437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaacggtgtctgggctgcCcaccatcttcccgcctttgg	10	17	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39795437	A	A	39795437	3	1	61	1	0	0	0	0	1	0	0	0	5264	623	22	2	1188	2	ERG	21	39795437	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	582258	39795437	8334458	6721	74966											
WRB	7485	broad.mit.edu	37	chr21	40765318	40765318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgtccatttagtgagcgGggttttgtgtctcagcctca	11	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40765318	T	T	40765318	1	4	61	0	1	0	0	0	0	0	0	0	17528	1247	43	2		2	WRB	21	40765318	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	969881	40765318	7364577	6722	74967											
B3GALT5	10317	broad.mit.edu	37	chr21	41033394	41033394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggctctagagaattcccGgggggaagattgtccgcctg	15	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41033394	A	A	41033394	3	1	61	1	0	0	0	0	1	0	0	0	1255	1116	39	4	910	4	B3GALT5	21	41033394	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	268076	41033394	7096501	6723	74968											
IGSF5	150084	broad.mit.edu	37	chr21	41137349	41137349	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaaagacacagtctgagtCactggatggacaacctgggg	12	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41137349	G	G	41137349	1	3	61	0	1	0	0	0	0	0	0	0	7672	841	29	4		4	IGSF5	21	41137349	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	103955	41137349	6992546	6724	74969											
DSCAM	1826	broad.mit.edu	37	chr21	41451740	41451740	+	Intron	DEL	G	-	-													tgataggaaggtgggagcaaGggtggctaagggagaagggc					rs5843997		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41451740	-	-	41451740	6	5	61	0	1	1	0	1	0	0	0	0	4808	1015	35	0		0	DSCAM	21	41451740	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	314391	41451740	6678155	6725	74970											
DSCAM	1826	broad.mit.edu	37	chr21	41550754	41550754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcatcaaagacctccgcCtagcacgggcaaaggtctgc	10	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41550754	A	A	41550754	1	1	61	0	1	0	0	0	0	0	0	0	4808	696	24	2		2	DSCAM	21	41550754	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	99014	41550754	6579141	6726	74971											
DSCAM	1826	broad.mit.edu	37	chr21	41555291	41555291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggcaacctgtgtaattgCcacctatgggagaagaagaa	11	8	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41555291	A	A	41555291	1	1	61	0	1	0	0	0	0	0	0	0	4808	754	26	3		3	DSCAM	21	41555291	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4537	41555291	6574604	6727	74972											
FAM3B	54097	broad.mit.edu	37	chr21	42720533	42720533	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagactgaataacgatgCcaagaatgccatagaagcac	9	10	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42720533	T	T	42720533	3	4	61	1	0	0	0	0	1	0	0	0	5608	739	26	4	526	4	FAM3B	21	42720533	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1165242	42720533	5409362	6728	74973											
UMODL1	89766	broad.mit.edu	37	chr21	43529799	43529799	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accccctcccgcgcaggccgGgcctgtgagggtacgtgtcg	15	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43529799	C	C	43529799	2	2	61	1	0	0	0	0	0	0	0	1	17106	1219	43	4		4	UMODL1	21	43529799	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	809266	43529799	4600096	6729	74974											
TFF2	7032	broad.mit.edu	37	chr21	43771095	43771095	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctgcaccccagggtggcTtgcagaatgcatggtgtcca	13	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43771095	A	A	43771095	1	1	61	1	0	0	0	0	0	0	0	0	15927	1624	56	5		5	TFF2	21	43771095	Translation_Start_Site	SNP	T	TCGA-17-Z031-01A-01W-0746-08	241296	43771095	4358800	6730	74975											
HSF2BP	11077	broad.mit.edu	37	chr21	45033781	45033781	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggtgtccaagagcacccGgcttgaattaaccaagaatt	9	9	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45033781	T	T	45033781	2	4	61	1	0	0	0	0	0	0	0	1	7464	1115	39	1		1	HSF2BP	21	45033781	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1262686	45033781	3096114	6731	74976											
DNMT3L	29947	broad.mit.edu	37	chr21	45671573	45671573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagatcgaagggtccccaCtcctccacctgcaggacaga	9	15	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45671573	A	A	45671573	3	1	61	1	0	0	0	0	1	0	0	0	4718	564	20	3	477	3	DNMT3L	21	45671573	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	637792	45671573	2458322	6732	74977											
TRPM2	7226	broad.mit.edu	37	chr21	45774530	45774530	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgctgtctttaccttcaGcaagaaagcctcagttcgtg	10	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45774530	T	T	45774530	5	4	61	1	0	0	0	0	0	0	1	0	16711	985	34	3	171	3	TRPM2	21	45774530	Splice_Site	SNP	G	TCGA-17-Z031-01A-01W-0746-08	102957	45774530	2355365	6733	74978											
TRPM2	7226	broad.mit.edu	37	chr21	45838357	45838357	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgctatcctgggagatctAcctgaaggagaactacctcc	9	13	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45838357	T	T	45838357	3	4	61	1	0	0	0	0	1	0	0	0	16711	391	14	5	3466	5	TRPM2	21	45838357	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	63827	45838357	2291538	6734	74979											
KRTAP10-7	386675	broad.mit.edu	37	chr21	46021344	46021344	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggctgctgcgtgcccgtcTgctgtaagcctgtgtgctgt	15	11	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46021344	G	G	46021344	3	3	61	1	0	0	0	0	1	0	0	0	8585	1580	55	5	814	5	KRTAP10-7	21	46021344	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	182987	46021344	2108551	6735	74980											
KRTAP10-11	386678	broad.mit.edu	37	chr21	46066914	46066914	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagccagcttgctgcaCctcctcctcctaccagcagg	8	19	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066914	T	T	46066914	3	4	61	1	0	0	0	0	1	0	0	0	8578	507	18	4	541	4	KRTAP10-11	21	46066914	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	45570	46066914	2062981	6736	74981											
ITGB2	3689	broad.mit.edu	37	chr21	46310029	46310029	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagacacagtcccccagcccTgagcagatgatggagttgtt	11	12	0	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46310029	A	A	46310029	2	1	61	1	0	0	0	0	0	0	0	1	7964	1567	55	5		5	ITGB2	21	46310029	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	243115	46310029	1819866	6737	74982											
ADARB1	104	broad.mit.edu	37	chr21	46591511	46591511	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacactaaatgctattttcTtactgtctttcagacagaaa	5	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46591511	G	G	46591511	1	3	61	0	1	0	0	0	0	0	0	0	282	1624	56	5		5	ADARB1	21	46591511	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	281482	46591511	1538384	6738	74983											
PRMT2	3275	broad.mit.edu	37	chr21	48063640	48063640	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagacgtcacaccaaagttAaatgaagaggtattcagatg	10	7	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48063640	T	T	48063640	1	4	61	0	1	0	0	0	0	0	0	0	12643	377	13	5		5	PRMT2	21	48063640	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1472129	48063640	66255	6739	74984											
MICAL3	57553	broad.mit.edu	37	chr22	18301350	18301350	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taggatttgagggacactggCctgaaggcaggcgtggggaa	18	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18301350	G	G	18301350	3	3	61	1	0	0	0	0	1	0	0	0	9664	738	26	4	1959	4	MICAL3	22	18301350	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08		18301350	33003216	6740	74985											
MICAL3	57553	broad.mit.edu	37	chr22	18445022	18445023	+	Intron	INS	-	ACA	ACA													aaagcgaacaagcaaacatgINStcctcaactgggcaggcagg					rs142722202	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACA	18445023	ACA	ACA	18445022	6	5	61	0	1	1	1	0	0	0	0	0	9664	1392	48	0		0	MICAL3	22	18445022	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	143672	18445022	32859544	6741	74986											
MICAL3	57553	broad.mit.edu	37	chr22	18462872	18462872	+	Intron	DEL	G	-	-													cccaaagtgctaggattacaGgggtgaaccaccgcacctgg					rs35209994		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18462872	-	-	18462872	6	5	61	0	1	1	0	1	0	0	0	0	9664	1015	35	0		0	MICAL3	22	18462872	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	17850	18462872	32841694	6742	74987											
TBX1	6899	broad.mit.edu	37	chr22	19751551	19751551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagctcccagcacatgcgGcagcagagggttcaatctca	10	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751551	T	T	19751551	1	4	61	0	1	0	0	0	0	0	0	0	15772	1218	42	3		3	TBX1	22	19751551	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1288679	19751551	31553015	6743	74988											
PI4KA	5297	broad.mit.edu	37	chr22	21087998	21087998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcgccgtccctggacgCtgcacagcacatcttggggg	15	14	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21087998	A	A	21087998	1	1	61	0	1	0	0	0	0	0	0	0	11968	812	28	3		3	PI4KA	22	21087998	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1336447	21087998	30216568	6744	74989											
SERPIND1	3053	broad.mit.edu	37	chr22	21134267	21134267	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacactgcggtcagtcaatGacctttatatccagaagcag	8	11	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21134267	T	T	21134267	3	4	61	1	0	0	0	0	1	0	0	0	14223	1290	45	3	669	3	SERPIND1	22	21134267	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	46269	21134267	30170299	6745	74990											
ZNF280B	140883	broad.mit.edu	37	chr22	22842728	22842728	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagctgtcgttcctctgcttCtcaaattccaaatgatgctt	6	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22842728	T	T	22842728	2	4	61	1	0	0	0	0	0	0	0	1	17941	912	32	4		4	ZNF280B	22	22842728	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1708461	22842728	28461838	6746	74991											
CABIN1	23523	broad.mit.edu	37	chr22	24451651	24451651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccctgaatttggcttccGgggagaccccgttcactgag	12	14	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24451651	T	T	24451651	1	4	61	0	1	0	0	0	0	0	0	0	2554	1131	39	1		1	CABIN1	22	24451651	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1608923	24451651	26852915	6747	74992											
GGT1	2678	broad.mit.edu	37	chr22	25010652	25010652	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaatggacttctcttccAtcctcctttgggcaggtggg	11	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25010652	G	G	25010652	1	3	61	0	1	0	0	0	0	0	0	0	6425	232	8	5		5	GGT1	22	25010652	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	559001	25010652	26293914	6748	74993											
SGSM1	129049	broad.mit.edu	37	chr22	25227206	25227206	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcaacaccaggaggtggaGcgaagcaagcaggagaggca	16	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25227206	A	A	25227206	1	1	61	0	1	0	0	0	0	0	0	0	14335	986	34	4		4	SGSM1	22	25227206	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	216554	25227206	26077360	6749	74994											
ADRBK2	157	broad.mit.edu	37	chr22	26074939	26074939	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttgtttgtttcatagcagGatgatttattatttttcctt	6	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26074939	T	T	26074939	1	4	61	0	1	0	0	0	0	0	0	0	344	1189	41	3		3	ADRBK2	22	26074939	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	847733	26074939	25229627	6750	74995											
MYO18B	84700	broad.mit.edu	37	chr22	26273910	26273910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaatggtttctgttcatGtgtttgtttttgtaggagga	13	3	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26273910	T	T	26273910	1	4	61	0	1	0	0	0	0	0	0	0	10160	1392	48	3		3	MYO18B	22	26273910	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	198971	26273910	25030656	6751	74996											
MYO18B	84700	broad.mit.edu	37	chr22	26304476	26304476	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccctcttccttagagcgagGagtaggacagggtctgggat	14	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26304476	T	T	26304476	1	4	61	0	1	0	0	0	0	0	0	0	10160	1189	41	3		3	MYO18B	22	26304476	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	30566	26304476	25000090	6752	74997											
MYO18B	84700	broad.mit.edu	37	chr22	26306919	26306919	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgtatccacagcttcatCagctggaaatgcagctggag	11	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26306919	A	A	26306919	3	1	61	1	0	0	0	0	1	0	0	0	10160	827	29	3	5392	3	MYO18B	22	26306919	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2443	26306919	24997647	6753	74998											
MN1	4330	broad.mit.edu	37	chr22	28194147	28194147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttactggccgaggtgcgCtggctgggctggaaatcagg	16	8	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28194147	A	A	28194147	3	1	61	1	0	0	0	0	1	0	0	0	9767	796	28	3	1585	3	MN1	22	28194147	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1887228	28194147	23110419	6754	74999											
EWSR1	2130	broad.mit.edu	37	chr22	29683136	29683136	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagcagagtgagttgctaaGagagaaaaccaaataagaat	11	5	0	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29683136	C	C	29683136	1	2	61	0	1	0	0	0	0	0	0	0	5338	957	33	4		4	EWSR1	22	29683136	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1488989	29683136	21621430	6755	75000											
AP1B1	162	broad.mit.edu	37	chr22	29727688	29727688	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctgcagctaagagcatgaCtccgcagacacgaccttcta	8	13	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29727688	G	G	29727688	1	3	61	0	1	0	0	0	0	0	0	0	733	580	20	4		4	AP1B1	22	29727688	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	44552	29727688	21576878	6756	75001											
AP1B1	162	broad.mit.edu	37	chr22	29735199	29735199	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaatgagtagagccacCtggctctttagaagacactg	12	9	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29735199	T	T	29735199	1	4	61	0	1	0	0	0	0	0	0	0	733	696	24	4		4	AP1B1	22	29735199	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7511	29735199	21569367	6757	75002											
NIPSNAP1	8508	broad.mit.edu	37	chr22	29956606	29956606	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgactttacatctaagataGtgtctcctgctagaacatta	7	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29956606	C	C	29956606	1	2	61	0	1	0	0	0	0	0	0	0	10524	1044	36	4		4	NIPSNAP1	22	29956606	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	221407	29956606	21347960	6758	75003											
NF2	4771	broad.mit.edu	37	chr22	30032943	30032943	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagcaggcgcctagctcatCactggggcgctgtagctgta	14	11	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30032943	T	T	30032943	1	4	61	0	1	0	0	0	0	0	0	0	10452	841	29	4		4	NF2	22	30032943	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	76337	30032943	21271623	6759	75004											
NF2	4771	broad.mit.edu	37	chr22	30051570	30051570	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggttttttattttgctcTattttttggtaggtaataaa	8	2	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30051570	C	C	30051570	1	2	61	0	1	0	0	0	0	0	0	0	10452	1537	53	5		5	NF2	22	30051570	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	18627	30051570	21252996	6760	75005											
TBC1D10A	83874	broad.mit.edu	37	chr22	30688856	30688856	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacctgcaggggcagtgaCacaggcaagtggacaccaag	13	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30688856	A	A	30688856	1	1	61	0	1	0	0	0	0	0	0	0	15717	493	17	3		3	TBC1D10A	22	30688856	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	637286	30688856	20615710	6761	75006											
SEC14L4	284904	broad.mit.edu	37	chr22	30899719	30899719	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcagtatgggcagcagGtcctggaggttctcccggaa	16	9	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30899719	C	C	30899719	3	2	61	1	0	0	0	0	1	0	0	0	14097	1252	44	4	1195	4	SEC14L4	22	30899719	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	210863	30899719	20404847	6762	75007											
LIMK2	3985	broad.mit.edu	37	chr22	31668724	31668724	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctggaggggacacccgcaGagggaggacagatgctgccc	16	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31668724	T	T	31668724	1	4	61	0	1	0	0	0	0	0	0	0	8874	957	33	3		3	LIMK2	22	31668724	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	769005	31668724	19635842	6763	75008											
SYN3	8224	broad.mit.edu	37	chr22	32999523	32999523	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactccgtctcaaaaaaaaaGaaaaaaaaaaaaaagaaaga	5	5	1	3	rs113282685		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32999523	A	A	32999523	1	1	61	0	1	0	0	0	0	0	0	0	15561	957	33	4		4	SYN3	22	32999523	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1330799	32999523	18305043	6764	75009											
LARGE	9215	broad.mit.edu	37	chr22	33716295	33716295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccctctcggggatgccCtccctcacttcactccactc	5	20	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33716295	A	A	33716295	1	1	61	0	1	0	0	0	0	0	0	0	8699	696	24	2		2	LARGE	22	33716295	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	716772	33716295	17588271	6765	75010											
MB	4151	broad.mit.edu	37	chr22	36007193	36007193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagtcggcatgggaggtgCggtgtgaggtctgggggcag	23	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36007193	T	T	36007193	1	4	61	0	1	0	0	0	0	0	0	0	9433	783	27	4		4	MB	22	36007193	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2290898	36007193	15297373	6766	75011											
CACNG2	10369	broad.mit.edu	37	chr22	36976258	36976258	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagctggatttgaagccccGagtgtgccaaagcctgcctc	12	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36976258	T	T	36976258	1	4	61	0	1	0	0	0	0	0	0	0	2583	1073	37	3		3	CACNG2	22	36976258	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	969065	36976258	14328308	6767	75012											
C22orf33	339669	broad.mit.edu	37	chr22	37387169	37387169	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggactcggacctgagcctttCcttattgttagcactttatt	8	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37387169	G	G	37387169	1	3	61	0	1	0	0	0	0	0	0	0	2167	870	30	4		4	C22orf33	22	37387169	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	410911	37387169	13917397	6768	75013											
TMPRSS6	164656	broad.mit.edu	37	chr22	37494471	37494471	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaccatcttctgggctttGgcggtttcactgcggaaggc	12	12	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37494471	T	T	37494471	2	4	61	1	0	0	0	0	0	0	0	1	16374	1335	47	2		2	TMPRSS6	22	37494471	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	107302	37494471	13810095	6769	75014											
CYTH4	27128	broad.mit.edu	37	chr22	37690552	37690552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctgtccatggagggtccCtcagactggggactcaggac	14	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37690552	A	A	37690552	1	1	61	0	1	0	0	0	0	0	0	0	4239	696	24	2		2	CYTH4	22	37690552	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	196081	37690552	13614014	6770	75015											
CYTH4	27128	broad.mit.edu	37	chr22	37695347	37695348	+	Splice_Site	DNP	GG	TT	TT													caacctcgtccaggccctcaGgtgagtagtcctggggcagg							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	37695348	TT	TT	37695347	5	4	61	1	0	0	0	0	0	0	1	0	4239	1014	35	2	456	2	CYTH4	22	37695347	Splice_Site	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	4795	37695347	13609219	6771	75016											
TRIOBP	11078	broad.mit.edu	37	chr22	38155174	38155175	+	Missense_Mutation	DNP	GG	TT	TT													ctcgtaggttcaggctcttcGggcccagctggaggcgtggc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38155175	TT	TT	38155174	3	4	61	1	0	0	0	0	1	0	0	0	16678	1116	39	1	6472	1	TRIOBP	22	38155174	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	459827	38155174	13149392	6772	75017											
GCAT	23464	broad.mit.edu	37	chr22	38211699	38211699	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgacagggcctgggcccctgGtgtccctgctgcggcagcgc	16	16	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38211699	C	C	38211699	3	2	61	1	0	0	0	0	1	0	0	0	6346	1261	44	4	948	4	GCAT	22	38211699	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	56525	38211699	13092867	6773	75018											
EIF3L	51386	broad.mit.edu	37	chr22	38245948	38245948	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccttagctctctgcttggCatctagactctaggatgagc	9	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38245948	T	T	38245948	1	4	61	0	1	0	0	0	0	0	0	0	5064	725	25	4		4	EIF3L	22	38245948	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	34249	38245948	13058618	6774	75019											
MICALL1	85377	broad.mit.edu	37	chr22	38333729	38333729	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgagccaccacgcccagCttaactgctgctgcttattt	9	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38333729	T	T	38333729	1	4	61	0	1	0	0	0	0	0	0	0	9666	812	28	4		4	MICALL1	22	38333729	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	87781	38333729	12970837	6775	75020											
KCNJ4	3761	broad.mit.edu	37	chr22	38824152	38824152	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcatgtcctgaagccggcGtggtcacctgggaagacgca	15	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38824152	T	T	38824152	1	4	61	0	1	0	0	0	0	0	0	0	8123	1160	40	3		3	KCNJ4	22	38824152	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	490423	38824152	12480414	6776	75021											
FAM83F	113828	broad.mit.edu	37	chr22	40417319	40417319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggagttcctcccatgtgGacagaaacctcctcctgctc	8	16	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40417319	T	T	40417319	3	4	61	1	0	0	0	0	1	0	0	0	5691	1174	41	3	819	3	FAM83F	22	40417319	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1593167	40417319	10887247	6777	75022											
MEI1	150365	broad.mit.edu	37	chr22	42125699	42125699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagagatgaaaccctgcagGtggccagtgctcactgtata	11	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42125699	T	T	42125699	3	4	61	1	0	0	0	0	1	0	0	0	9558	1261	44	3	925	3	MEI1	22	42125699	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1708380	42125699	9178867	6778	75023											
WBP2NL	164684	broad.mit.edu	37	chr22	42415925	42415925	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccctactttgtcaggtaGtgcttcccttggtgtttgtg	11	10	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42415925	C	C	42415925	1	2	61	0	1	0	0	0	0	0	0	0	17387	1044	36	4		4	WBP2NL	22	42415925	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	290226	42415925	8888641	6779	75024											
SCUBE1	80274	broad.mit.edu	37	chr22	43614196	43614196	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgcgtgcccaccactgtTtaccccggctcatgtgcaag	9	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43614196	A	A	43614196	1	1	61	0	1	0	0	0	0	0	0	0	14057	1856	64	5		5	SCUBE1	22	43614196	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1198271	43614196	7690370	6780	75025											
MPPED1	758	broad.mit.edu	37	chr22	43834266	43834266	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacccgttccaggcagaGgacgcggaggctgcaggggc	18	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43834266	T	T	43834266	1	4	61	0	1	0	0	0	0	0	0	0	9835	1015	35	2		2	MPPED1	22	43834266	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	220070	43834266	7470300	6781	75026											
EFCAB6	64800	broad.mit.edu	37	chr22	44151498	44151498	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagctttcgcactggcttgTtatcagaagatctatttagt	8	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44151498	C	C	44151498	1	2	61	0	1	0	0	0	0	0	0	0	4979	1740	60	5		5	EFCAB6	22	44151498	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	317232	44151498	7153068	6782	75027											
PARVB	29780	broad.mit.edu	37	chr22	44535804	44535804	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtgcaaacattaataattCacacaagcacctctcgttta	4	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44535804	G	G	44535804	1	3	61	0	1	0	0	0	0	0	0	0	11563	841	29	4		4	PARVB	22	44535804	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	384306	44535804	6768762	6783	75028											
GRAMD4	23151	broad.mit.edu	37	chr22	47054064	47054065	+	Intron	DNP	GG	CT	CT													gacatgagcgatggtcacctGgccgttctctcccccataga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	47054065	CT	CT	47054064	1	2	61	0	1	0	0	0	0	0	0	0	6818	1363	47	4		4	GRAMD4	22	47054064	Intron	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	2518260	47054064	4250502	6784	75029											
GRAMD4	23151	broad.mit.edu	37	chr22	47069562	47069562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgacgctgtttgccgttGgcagctgcagacgacctcgt	12	14	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47069562	T	T	47069562	1	4	61	0	1	0	0	0	0	0	0	0	6818	1363	47	2		2	GRAMD4	22	47069562	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15498	47069562	4235004	6785	75030											
SAPS2	9701	broad.mit.edu	37	chr22	50876562	50876562	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagcggctcctgtctcccCcagaccctctggaaactcac	9	17	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50876562	G	G	50876562	1	3	61	0	1	0	0	0	0	0	0	0	13949	638	22	4		4	SAPS2	22	50876562	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3807000	50876562	428004	6786	75031											
SBF1	6305	broad.mit.edu	37	chr22	50906182	50906182	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acggcccaaggatgcagcttCattcatgctgtacccagagg	11	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50906182	A	A	50906182	1	1	61	0	1	0	0	0	0	0	0	0	13970	841	29	3		3	SBF1	22	50906182	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	29620	50906182	398384	6787	75032											
ASMTL	8623	broad.mit.edu	37	chrX	1554611	1554611	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagcatcctgtaggcgtccTgcttgtccaccggcttctcc	9	16	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1554611	A	A	1554611	3	1	61	1	0	0	0	0	1	0	0	0	1050	1580	55	5	1591	5	ASMTL	23	1554611	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08		1554611	153715949	6788	75033											
SFRS17A	8227	broad.mit.edu	37	chrX	1720179	1720179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccgggccaccggagacGggcttgctgaccggcacaag	18	13	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1720179	T	T	1720179	3	4	61	1	0	0	0	0	1	0	0	0	14286	1116	39	1	1794	1	SFRS17A	23	1720179	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	165568	1720179	153550381	6789	75034											
ASMT	438	broad.mit.edu	37	chrX	1743181	1743181	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttctatcgaaacacagaGctgtccagcgactacctgac	8	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1743181	A	A	1743181	2	1	61	1	0	0	0	0	0	0	0	1	1049	962	34	4		4	ASMT	23	1743181	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	23002	1743181	153527379	6790	75035											
ASMT	438	broad.mit.edu	37	chrX	1746597	1746597	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctctctcttttcttagaGaaggaaggaaccagtacctg	8	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1746597	A	A	1746597	3	1	61	1	0	0	0	0	1	0	0	0	1049	956	33	4	390	4	ASMT	23	1746597	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3416	1746597	153523963	6791	75036											
ARSF	416	broad.mit.edu	37	chrX	3002284	3002284	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtgtgtttggttttagGcaaatggcaccaaggcttga	13	5	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3002284	C	C	3002284	3	2	61	1	0	0	0	0	1	0	0	0	995	1217	42	4	425	4	ARSF	23	3002284	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1255687	3002284	152268276	6792	75037											
MXRA5	25878	broad.mit.edu	37	chrX	3241144	3241144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttctagccccatgctgGctgaggaaatggtacccaaa	11	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3241144	T	T	3241144	3	4	61	1	0	0	0	0	1	0	0	0	10097	1203	42	3	5916	3	MXRA5	23	3241144	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	238860	3241144	152029416	6793	75038											
NLGN4X	57502	broad.mit.edu	37	chrX	5811483	5811484	+	Frame_Shift_Ins	INS	-	T	T													tggaggaacctttgtggttgINSttgaaacatactggaatatc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5811484	T	T	5811483	7	5	61	1	0	1	1	0	0	0	0	0	10559	1377	48	0	628	0	NLGN4X	23	5811483	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	2570339	5811483	149459077	6794	75039											
NLGN4X	57502	broad.mit.edu	37	chrX	5821360	5821360	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggtcggcggtggccacGgcgggggccacccactggtg	19	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5821360	T	T	5821360	2	4	61	1	0	0	0	0	0	0	0	1	10559	1103	39	1		1	NLGN4X	23	5821360	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	9877	5821360	149449200	6795	75040											
NLGN4X	57502	broad.mit.edu	37	chrX	5827247	5827247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccaggagcccatagttgCcttttgctgcctggtcaccg	11	13	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827247	A	A	5827247	3	1	61	1	0	0	0	0	1	0	0	0	10559	739	26	3	1803	3	NLGN4X	23	5827247	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5887	5827247	149443313	6796	75041											
NLGN4X	57502	broad.mit.edu	37	chrX	6069310	6069310	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactgctccactggacccaaGatctcattgggtaacggtgt	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6069310	T	T	6069310	2	4	61	1	0	0	0	0	0	0	0	1	10559	932	33	3		3	NLGN4X	23	6069310	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	242063	6069310	149201250	6797	75042											
WWC3	55841	broad.mit.edu	37	chrX	10066580	10066580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaaacaagacttgtagaccGagtcagacttaattggcaat	8	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10066580	T	T	10066580	3	4	61	1	0	0	0	0	1	0	0	0	17540	1058	37	3	718	3	WWC3	23	10066580	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3997270	10066580	145203980	6798	75043											
WWC3	55841	broad.mit.edu	37	chrX	10085242	10085242	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgtgggtctctggcctcCagccggggctccctgagctc	14	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10085242	T	T	10085242	2	4	61	1	0	0	0	0	0	0	0	1	17540	581	21	4		4	WWC3	23	10085242	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	18662	10085242	145185318	6799	75044											
MID1	4281	broad.mit.edu	37	chrX	10422852	10422852	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtatgggttgactctctaAgtacagaatgagatgtgcct	11	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10422852	G	G	10422852	1	3	61	0	1	0	0	0	0	0	0	0	9669	87	3	5		5	MID1	23	10422852	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	337610	10422852	144847708	6800	75045											
ARHGAP6	395	broad.mit.edu	37	chrX	11316437	11316437	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttattccctgaaaatattaGgcatgcattaaaattcccat	4	9	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11316437	C	C	11316437	1	2	61	0	1	0	0	0	0	0	0	0	889	1015	35	4		4	ARHGAP6	23	11316437	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	893585	11316437	143954123	6801	75046											
FRMPD4	9758	broad.mit.edu	37	chrX	12738731	12738731	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaagctgatcccatccTgctaccatcaaacattcact	4	15	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12738731	A	A	12738731	1	1	61	0	1	0	0	0	0	0	0	0	6119	1595	55	5		5	FRMPD4	23	12738731	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1422294	12738731	142531829	6802	75047											
PRPS2	5634	broad.mit.edu	37	chrX	12817486	12817486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcccgtgtttcccatacGcccgacaagataaaaaggac	8	12	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12817486	T	T	12817486	3	4	61	1	0	0	0	0	1	0	0	0	12686	1087	38	3	289	3	PRPS2	23	12817486	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	78755	12817486	142453074	6803	75048											
TLR8	51311	broad.mit.edu	37	chrX	12924764	12924764	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctcggccacctcctgCatagagggtaccattctgcg	9	15	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12924764	A	A	12924764	1	1	61	0	1	0	0	0	0	0	0	0	16080	725	25	3		3	TLR8	23	12924764	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	107278	12924764	142345796	6804	75049											
FAM9C	171484	broad.mit.edu	37	chrX	13057814	13057814	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccatgagtccactaatgggCgaccctctctgggctcatgc	10	14	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13057814	G	G	13057814	1	3	61	0	1	0	0	0	0	0	0	0	5718	783	27	4		4	FAM9C	23	13057814	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	133050	13057814	142212746	6805	75050											
FAM9C	171484	broad.mit.edu	37	chrX	13061982	13061982	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcgacctctgaacctggtGagtgcaaagacacactaagg	12	10	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13061982	T	T	13061982	1	4	61	0	1	0	0	0	0	0	0	0	5718	1305	45	3		3	FAM9C	23	13061982	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	4168	13061982	142208578	6806	75051											
EGFL6	25975	broad.mit.edu	37	chrX	13596328	13596329	+	Intron	INS	-	T	T													tgcaacagaatacttcaaaaINStttagtggcttacaatgaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13596329	T	T	13596328	6	5	61	0	1	1	1	0	0	0	0	0	5003	116	4	0		0	EGFL6	23	13596328	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	534346	13596328	141674232	6807	75052											
EGFL6	25975	broad.mit.edu	37	chrX	13645250	13645250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttgctctttgattaccGgctggccggagacaaagtcg	12	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645250	T	T	13645250	3	4	61	1	0	0	0	0	1	0	0	0	5003	1116	39	1	1451	1	EGFL6	23	13645250	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	48922	13645250	141625310	6808	75053											
OFD1	8481	broad.mit.edu	37	chrX	13764409	13764409	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgacgatgtttctatgTcctaatttgatgtgttattt	7	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13764409	C	C	13764409	1	2	61	0	1	0	0	0	0	0	0	0	10933	1682	58	5		5	OFD1	23	13764409	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	119159	13764409	141506151	6809	75054											
OFD1	8481	broad.mit.edu	37	chrX	13778751	13778751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggcagtgcagcctcgagGctccgcgggggcacttcctc	14	15	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13778751	T	T	13778751	3	4	61	1	0	0	0	0	1	0	0	0	10933	1194	42	3	2234	3	OFD1	23	13778751	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14342	13778751	141491809	6810	75055											
GRPR	2925	broad.mit.edu	37	chrX	16141979	16141979	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattaaagaaggcaaagagCccggcatagatcttatcttc	8	8	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16141979	T	T	16141979	1	4	61	0	1	0	0	0	0	0	0	0	6874	754	26	4		4	GRPR	23	16141979	5'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2363228	16141979	139128581	6811	75056											
PHKA2	5256	broad.mit.edu	37	chrX	18959947	18959947	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcccctgctggccaacaCtgtatatccagccaatgatt	8	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18959947	G	G	18959947	1	3	61	0	1	0	0	0	0	0	0	0	11939	580	20	4		4	PHKA2	23	18959947	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2817968	18959947	136310613	6812	75057											
GPR64	10149	broad.mit.edu	37	chrX	19027766	19027766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatttgcagggtcttggGccacaaaggtagttgtgttg	15	5	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19027766	T	T	19027766	3	4	61	1	0	0	0	0	1	0	0	0	6770	1203	42	3	1701	3	GPR64	23	19027766	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	67819	19027766	136242794	6813	75058											
MAP3K15	389840	broad.mit.edu	37	chrX	19380748	19380748	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgattgagaagtagtctaGaatctactggagtcctggat	11	5	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19380748	T	T	19380748	1	4	61	0	1	0	0	0	0	0	0	0	9341	957	33	3		3	MAP3K15	23	19380748	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	352982	19380748	135889812	6814	75059											
SH3KBP1	30011	broad.mit.edu	37	chrX	19817533	19817533	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaaagaatccacttctatCacagacaagggcttagtgaa	8	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19817533	A	A	19817533	1	1	61	0	1	0	0	0	0	0	0	0	14368	841	29	3		3	SH3KBP1	23	19817533	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	436785	19817533	135453027	6815	75060											
MAP7D2	256714	broad.mit.edu	37	chrX	20030679	20030692	+	Intron	DEL	TGTTAATCATAAAA	-	-													cgagaacacaaagtcccttgTgttaatcataaaatgtctaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20030692	-	-	20030679	6	5	61	0	1	1	0	1	0	0	0	0	9360	1711	59	0		0	MAP7D2	23	20030679	Intron	DEL	TGTTAATCATAAAA	TCGA-17-Z031-01A-01W-0746-08	213146	20030679	135239881	6816	75061											
CNKSR2	22866	broad.mit.edu	37	chrX	21666912	21666913	+	Intron	INS	-	T	T													tctctctctctctctctttcINStttttttttttttttttttt					rs5901679		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21666913	T	T	21666912	6	5	61	0	1	1	1	0	0	0	0	0	3639	928	32	0		0	CNKSR2	23	21666912	Intron	INS	-	TCGA-17-Z031-01A-01W-0746-08	1636233	21666912	133603648	6817	75062											
SMPX	23676	broad.mit.edu	37	chrX	21772556	21772556	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctttcagtctcagtttccAaagttacgaagacactctcc	5	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21772556	T	T	21772556	1	4	61	0	1	0	0	0	0	0	0	0	14924	145	5	5		5	SMPX	23	21772556	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	105644	21772556	133498004	6818	75063											
PDK3	5165	broad.mit.edu	37	chrX	24546235	24546235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccacttcgaaaaatagatCgtctttttaactacatgtat	4	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24546235	A	A	24546235	3	1	61	1	0	0	0	0	1	0	0	0	11771	884	31	3	929	3	PDK3	23	24546235	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2773679	24546235	130724325	6819	75064											
PCYT1B	9468	broad.mit.edu	37	chrX	24580058	24580058	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgagggaacagccgctgCcacaggtggtttacttggtg	16	8	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24580058	A	A	24580058	1	1	61	0	1	0	0	0	0	0	0	0	11705	754	26	3		3	PCYT1B	23	24580058	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33823	24580058	130690502	6820	75065											
PCYT1B	9468	broad.mit.edu	37	chrX	24580306	24580306	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagggtctctctgctgagcTgcagctcctgtgactattac	10	12	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24580306	A	A	24580306	1	1	61	0	1	0	0	0	0	0	0	0	11705	1595	55	5		5	PCYT1B	23	24580306	3'UTR	SNP	T	TCGA-17-Z031-01A-01W-0746-08	248	24580306	130690254	6821	75066											
MAGEB18	286514	broad.mit.edu	37	chrX	26157432	26157432	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagatcctttaaacaagaaAgtagtgtcgctggtgcattt	10	6	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26157432	C	C	26157432	3	2	61	1	0	0	0	0	1	0	0	0	9267	69	3	5	332	5	MAGEB18	23	26157432	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1577126	26157432	129113128	6822	75067											
DCAF8L2	347442	broad.mit.edu	37	chrX	27766465	27766465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccccaggagtgagtttGtagtgagcggtagtgattgc	16	6	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27766465	T	T	27766465	3	4	61	1	0	0	0	0	1	0	0	0	4311	1377	48	3	1455	3	DCAF8L2	23	27766465	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1609033	27766465	127504095	6823	75068											
DCAF8L2	347442	broad.mit.edu	37	chrX	27766653	27766653	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacccacagctaaagctgcCactgagcttactgggttaaa	8	12	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27766653	A	A	27766653	2	1	61	1	0	0	0	0	0	0	0	1	4311	581	21	2		2	DCAF8L2	23	27766653	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	188	27766653	127503907	6824	75069											
MAGEB10	139422	broad.mit.edu	37	chrX	27840245	27840245	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccacgctatcaattcctAtggggcccaagagcccatgc	8	16	1	1	rs140221361		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27840245	C	C	27840245	2	2	61	1	0	0	0	0	0	0	0	1	9265	436	16	5		5	MAGEB10	23	27840245	Silent	SNP	A	TCGA-17-Z031-01A-01W-0746-08	73592	27840245	127430315	6825	75070											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29686466	29686466	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaagtgaaaaatatttgGgaaaatagactgtattctat	8	2	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29686466	C	C	29686466	1	2	61	0	1	0	0	0	0	0	0	0	7731	1247	43	4		4	IL1RAPL1	23	29686466	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1846221	29686466	125584094	6826	75071											
MAGEB4	4115	broad.mit.edu	37	chrX	30261047	30261047	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgcccaacagtgatccCccacgctatcaattcctgtg	8	15	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30261047	A	A	30261047	2	1	61	1	0	0	0	0	0	0	0	1	9270	610	22	2		2	MAGEB4	23	30261047	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	574581	30261047	125009513	6827	75072											
DMD	1756	broad.mit.edu	37	chrX	31224699	31224699	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattaatatacacgacttacAtctgtacttgtcttccaaat	3	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31224699	T	T	31224699	3	4	61	1	0	0	0	0	1	0	0	0	4620	231	8	5	1554	5	DMD	23	31224699	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	963652	31224699	124045861	6828	75073											
DMD	1756	broad.mit.edu	37	chrX	31986449	31986449	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcattcctattagatctgtcGccctacctcttttttctgtc	4	13	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31986449	C	C	31986449	1	2	61	0	1	0	0	0	0	0	0	0	4620	1102	38	4		4	DMD	23	31986449	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	761750	31986449	123284111	6829	75074											
DMD	1756	broad.mit.edu	37	chrX	32466604	32466604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatttcccattcagcctaGtgcagagccactggtagttg	10	11	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32466604	T	T	32466604	3	4	61	1	0	0	0	0	1	0	0	0	4620	1029	36	3	7757	3	DMD	23	32466604	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	480155	32466604	122803956	6830	75075											
DMD	1756	broad.mit.edu	37	chrX	32536046	32536046	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcattaatctatcaactagTagaatcacagataacaaagc	5	9	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32536046	A	A	32536046	1	1	61	0	1	0	0	0	0	0	0	0	4620	1653	57	5		5	DMD	23	32536046	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	69442	32536046	122734514	6831	75076											
FAM47C	442444	broad.mit.edu	37	chrX	37029517	37029517	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggacttatgactctgttAagactcctattcaacgtgca	8	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37029517	G	G	37029517	3	3	61	1	0	0	0	0	1	0	0	0	5622	363	13	5	3036	5	FAM47C	23	37029517	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	4493471	37029517	118241043	6832	75077											
PRRG1	5638	broad.mit.edu	37	chrX	37265373	37265373	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgaaatgaaatgctcacaTtgaccacatcagctgtactg	7	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37265373	G	G	37265373	1	3	61	0	1	0	0	0	0	0	0	0	12711	1508	52	5		5	PRRG1	23	37265373	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	235856	37265373	118005187	6833	75078											
BCOR	54880	broad.mit.edu	37	chrX	39932963	39932963	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcggtgccgcccatgcGcgggcatgatgaactccgct	13	14	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39932963	A	A	39932963	3	1	61	1	0	0	0	0	1	0	0	0	1391	1087	38	4	3679	4	BCOR	23	39932963	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2667590	39932963	115337597	6834	75079											
BCOR	54880	broad.mit.edu	37	chrX	39934292	39934293	+	Frame_Shift_Ins	INS	-	A	A													agagtgcttgtggcagcctcINSccgacctttctctgagccca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39934293	A	A	39934292	7	5	61	1	0	1	1	0	0	0	0	0	1391	864	30	0	5008	0	BCOR	23	39934292	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08	1329	39934292	115336268	6835	75080											
MED14	9282	broad.mit.edu	37	chrX	40539396	40539396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacagtacctataaggaaCaaacacagtgagagcagcca	8	10	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40539396	A	A	40539396	1	1	61	0	1	0	0	0	0	0	0	0	9525	493	17	3		3	MED14	23	40539396	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	605104	40539396	114731164	6836	75081											
CASK	8573	broad.mit.edu	37	chrX	41604855	41604855	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatctgctccatccataCtgtaaaaaaatgtgaaaaag	6	8	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41604855	A	A	41604855	5	1	61	1	0	0	0	0	0	0	1	0	2691	579	20	3	2598	3	CASK	23	41604855	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1065459	41604855	113665705	6837	75082											
ZNF41	7592	broad.mit.edu	37	chrX	47306910	47306910	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatctgtcagtaaaggccttCtgacattctgtacaagcata	8	9	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47306910	A	A	47306910	3	1	61	1	0	0	0	0	1	0	0	0	18016	912	32	3	84	3	ZNF41	23	47306910	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	5702055	47306910	107963650	6838	75083											
SYN1	6853	broad.mit.edu	37	chrX	47432343	47432343	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtcctggctaaggctggGcctgggcggggctggctctg	18	12	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47432343	C	C	47432343	3	2	61	1	0	0	0	0	1	0	0	0	15559	1203	42	4	83	4	SYN1	23	47432343	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	125433	47432343	107838217	6839	75084											
TIMP1	7076	broad.mit.edu	37	chrX	47445945	47445945	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctgtttatccatcccctGcaaactgcagagtggcactc	7	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47445945	A	A	47445945	3	1	61	1	0	0	0	0	1	0	0	0	16040	1319	46	4	497	4	TIMP1	23	47445945	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	13602	47445945	107824615	6840	75085											
UXT	8409	broad.mit.edu	37	chrX	47517012	47517012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagcccaaatccacctgCatatataactccgagtgctt	5	13	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47517012	A	A	47517012	3	1	61	1	0	0	0	0	1	0	0	0	17237	710	25	3	282	3	UXT	23	47517012	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	71067	47517012	107753548	6841	75086											
UXT	8409	broad.mit.edu	37	chrX	47517120	47517121	+	Intron	DNP	CC	AA	AA													ttgggtctggagtctctcttCccatttccctcccttgccca							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47517121	AA	AA	47517120	1	1	61	0	1	0	0	0	0	0	0	0	17237	870	30	3		3	UXT	23	47517120	Intron	DNP	CC	TCGA-17-Z031-01A-01W-0746-08	108	47517120	107753440	6842	75087											
SSX5	6758	broad.mit.edu	37	chrX	48047126	48047126	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcaccagttgctttctctCacgcactctgtgggtccagg	9	13	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48047126	A	A	48047126	4	1	61	1	0	0	0	0	0	1	0	0	15326	835	29	3	62	3	SSX5	23	48047126	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	530006	48047126	107223434	6843	75088											
SSX5	6758	broad.mit.edu	37	chrX	48054818	48054818	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgggagcactctgtcctaCaagagaaacagtctgagtct	10	11	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48054818	G	G	48054818	1	3	61	0	1	0	0	0	0	0	0	0	15326	493	17	4		4	SSX5	23	48054818	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	7692	48054818	107215742	6844	75089											
SSX3	10214	broad.mit.edu	37	chrX	48206501	48206501	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagagaaggaaagtaagtGgcagtgagttcccaccacgt	13	7	0	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48206501	C	C	48206501	1	2	61	0	1	0	0	0	0	0	0	0	15323	1363	47	4		4	SSX3	23	48206501	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	151683	48206501	107064059	6845	75090											
EBP	10682	broad.mit.edu	37	chrX	48385768	48385768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggtgggatctctcaacGgtgcccttccaggggtaagt	15	9	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48385768	T	T	48385768	1	4	61	0	1	0	0	0	0	0	0	0	4926	1131	39	1		1	EBP	23	48385768	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	179267	48385768	106884792	6846	75091											
HDAC6	10013	broad.mit.edu	37	chrX	48676754	48676754	+	Frame_Shift_Del	DEL	C	-	-													tcaacgtggcatggaacgggCcccgcatgggtgatgctgac							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48676754	-	-	48676754	7	5	61	1	0	1	0	1	0	0	0	0	7078	739	26	0	2204	0	HDAC6	23	48676754	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	290986	48676754	106593806	6847	75092											
PIM2	11040	broad.mit.edu	37	chrX	48772672	48772672	+	Intron	DEL	G	-	-													gcatgtgactgagtctgactGggggcacaggtggggtggga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48772672	-	-	48772672	6	5	61	0	1	1	0	1	0	0	0	0	12023	1363	47	0		0	PIM2	23	48772672	Intron	DEL	G	TCGA-17-Z031-01A-01W-0746-08	95918	48772672	106497888	6848	75093											
PRICKLE3	4007	broad.mit.edu	37	chrX	49034420	49034420	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgggggcggctctgacGcatgacatagcgctgccctc	15	13	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49034420	A	A	49034420	3	1	61	1	0	0	0	0	1	0	0	0	12594	1087	38	4	982	4	PRICKLE3	23	49034420	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	261748	49034420	106236140	6849	75094											
CACNA1F	778	broad.mit.edu	37	chrX	49068471	49068471	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacacatcaaggctgtGtcagtggggtgaacccatgc	14	9	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49068471	C	C	49068471	1	2	61	0	1	0	0	0	0	0	0	0	2569	1392	48	4		4	CACNA1F	23	49068471	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34051	49068471	106202089	6850	75095											
GAGE12J	729396	broad.mit.edu	37	chrX	49217133	49217133	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccccagcggtgtggagtgCggagcgcccgagtgagaagc	17	13	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49217133	T	T	49217133	1	4	61	0	1	0	0	0	0	0	0	0	6249	783	27	4		4	GAGE12J	23	49217133	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	148662	49217133	106053427	6851	75096											
AKAP4	8852	broad.mit.edu	37	chrX	49961636	49961636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccttctgagctggaactaGcagcatcctatggaattaaa	9	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49961636	A	A	49961636	3	1	61	1	0	0	0	0	1	0	0	0	453	971	34	4	2394	4	AKAP4	23	49961636	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	744503	49961636	105308924	6852	75097											
DGKK	139189	broad.mit.edu	37	chrX	50133271	50133271	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctctgggttttgccaaTtatttcactgagtaataaag	7	7	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50133271	C	C	50133271	1	2	61	0	1	0	0	0	0	0	0	0	4512	1508	52	5		5	DGKK	23	50133271	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	171635	50133271	105137289	6853	75098											
DGKK	139189	broad.mit.edu	37	chrX	50167246	50167246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaatatgctatacattacCgcgggatggtgtgcaaagta	11	7	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50167246	A	A	50167246	2	1	61	1	0	0	0	0	0	0	0	1	4512	666	23	1		1	DGKK	23	50167246	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	33975	50167246	105103314	6854	75099											
KDM5C	8242	broad.mit.edu	37	chrX	53222185	53222185	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcggctgctgtgggcagggCagatgcagccggggagtcag	21	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53222185	G	G	53222185	2	3	61	1	0	0	0	0	0	0	0	1	8205	697	25	4		4	KDM5C	23	53222185	Silent	SNP	C	TCGA-17-Z031-01A-01W-0746-08	3054939	53222185	102048375	6855	75100											
FGD1	2245	broad.mit.edu	37	chrX	54476880	54476880	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatatgaccttgggcaagtCacataatctgcctgggttta	9	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54476880	A	A	54476880	1	1	61	0	1	0	0	0	0	0	0	0	5889	841	29	3		3	FGD1	23	54476880	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1254695	54476880	100793680	6856	75101											
ITIH5L	347365	broad.mit.edu	37	chrX	54780086	54780086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcttggggctcttacctGcctttgggtcctctatgagc	11	11	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54780086	A	A	54780086	3	1	61	1	0	0	0	0	1	0	0	0	7978	1319	46	4	603	4	ITIH5L	23	54780086	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	303206	54780086	100490474	6857	75102											
ITIH5L	347365	broad.mit.edu	37	chrX	54817493	54817493	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccaggctggtggagatGcggaacttctctgattcccg	14	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54817493	T	T	54817493	2	4	61	1	0	0	0	0	0	0	0	1	7978	1306	46	3		3	ITIH5L	23	54817493	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	37407	54817493	100453067	6858	75103											
PFKFB1	5207	broad.mit.edu	37	chrX	54960388	54960388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttccctgaggtatcaccTcccctcccccatcaccagcc	5	21	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54960388	C	C	54960388	1	2	61	0	1	0	0	0	0	0	0	0	11855	1566	54	5		5	PFKFB1	23	54960388	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	142895	54960388	100310172	6859	75104											
PFKFB1	5207	broad.mit.edu	37	chrX	54982667	54982667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttccagaaccttttccCggtcacagtctatataatca	5	12	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54982667	A	A	54982667	3	1	61	1	0	0	0	0	1	0	0	0	11855	652	23	1	890	1	PFKFB1	23	54982667	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	22279	54982667	100287893	6860	75105											
ALAS2	212	broad.mit.edu	37	chrX	55041505	55041505	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatcagtcccagagcaacAggatcatgtgccagataaca	8	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55041505	T	T	55041505	1	4	61	0	1	0	0	0	0	0	0	0	485	203	7	5		5	ALAS2	23	55041505	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	58838	55041505	100229055	6861	75106											
PAGE5	90737	broad.mit.edu	37	chrX	55247767	55247767	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcatatatatagctaagTtcttacacactttttccaaa	3	8	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55247767	G	G	55247767	1	3	61	0	1	0	0	0	0	0	0	0	11487	1740	60	5		5	PAGE5	23	55247767	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	206262	55247767	100022793	6862	75107											
PAGE5	90737	broad.mit.edu	37	chrX	55248301	55248301	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgaaggagcacctgcTgttcaaggtgaagggagagt	14	5	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55248301	A	A	55248301	2	1	61	1	0	0	0	0	0	0	0	1	11487	1567	55	5		5	PAGE5	23	55248301	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	534	55248301	100022259	6863	75108											
KLF8	11279	broad.mit.edu	37	chrX	56291790	56291790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgccccaagtggaaccaGttgacctctcctttcacaag	8	15	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56291790	T	T	56291790	3	4	61	1	0	0	0	0	1	0	0	0	8423	1029	36	3	269	3	KLF8	23	56291790	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1043489	56291790	98978770	6864	75109											
MTMR8	55613	broad.mit.edu	37	chrX	63444594	63444594	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctactggggccccaggagaGggaggaagatggagttttct	16	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63444594	A	A	63444594	1	1	61	0	1	0	0	0	0	0	0	0	10043	1015	35	4		4	MTMR8	23	63444594	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	7152804	63444594	91825966	6865	75110											
MTMR8	55613	broad.mit.edu	37	chrX	63565051	63565051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctcggttggccatggCattcaactgcaatagcagag	12	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63565051	A	A	63565051	3	1	61	1	0	0	0	0	1	0	0	0	10043	710	25	3	1407	3	MTMR8	23	63565051	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	120457	63565051	91705509	6866	75111											
MSN	4478	broad.mit.edu	37	chrX	64956699	64956699	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaagcgtgaaatggcagaGaaggagaaagagaagattga	15	2	0	7	rs113359990		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64956699	A	A	64956699	2	1	61	1	0	0	0	0	0	0	0	1	9979	933	33	4		4	MSN	23	64956699	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1391648	64956699	90313861	6867	75112											
MSN	4478	broad.mit.edu	37	chrX	64956952	64956952	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactttctgccagctttgtcTtggggtggatcatttccagg	11	9	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64956952	C	C	64956952	1	2	61	0	1	0	0	0	0	0	0	0	9979	1624	56	5		5	MSN	23	64956952	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	253	64956952	90313608	6868	75113											
HEPH	9843	broad.mit.edu	37	chrX	65486408	65486408	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacccttctgctcgttgttcTggctcttggtggagtggttt	12	10	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65486408	A	A	65486408	3	1	61	1	0	0	0	0	1	0	0	0	7121	1580	55	5	3615	5	HEPH	23	65486408	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	529456	65486408	89784152	6869	75114											
OPHN1	4983	broad.mit.edu	37	chrX	67283936	67283936	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttccccactcctctgaaTaggtagtttggggtgttgtg	12	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67283936	A	A	67283936	3	1	61	1	0	0	0	0	1	0	0	0	10969	1406	49	5	506	5	OPHN1	23	67283936	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1797528	67283936	87986624	6870	75115											
AWAT2	158835	broad.mit.edu	37	chrX	69264267	69264267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagtgacaggccagtatGgtgtgaacaccaccaggtag	13	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69264267	T	T	69264267	3	4	61	1	0	0	0	0	1	0	0	0	1240	1348	47	2	894	2	AWAT2	23	69264267	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1980331	69264267	86006293	6871	75116											
AWAT1	158833	broad.mit.edu	37	chrX	69454624	69454624	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagctaccttgccatctgtGagtattgacccaagagtgca	10	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69454624	A	A	69454624	1	1	61	0	1	0	0	0	0	0	0	0	1239	1305	45	4		4	AWAT1	23	69454624	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	190357	69454624	85815936	6872	75117											
KIF4A	24137	broad.mit.edu	37	chrX	69640090	69640090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcttcttctctggctgctCccctatcgaagaagaggccc	9	15	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69640090	T	T	69640090	3	4	61	1	0	0	0	0	1	0	0	0	8373	855	30	4	3792	4	KIF4A	23	69640090	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	185466	69640090	85630470	6873	75118											
DLG3	1741	broad.mit.edu	37	chrX	69698879	69698879	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcaaagcaaagactgagtGggctggctctggctgctttt	12	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69698879	A	A	69698879	1	1	61	0	1	0	0	0	0	0	0	0	4596	1363	47	4		4	DLG3	23	69698879	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	58789	69698879	85571681	6874	75119											
MED12	9968	broad.mit.edu	37	chrX	70354970	70354970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggagcgccagtcagacaGtctggaaaaggttcgccagc	16	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70354970	T	T	70354970	3	4	61	1	0	0	0	0	1	0	0	0	9521	1029	36	3	5034	3	MED12	23	70354970	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	656091	70354970	84915590	6875	75120											
NLGN3	54413	broad.mit.edu	37	chrX	70389250	70389250	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggtccgagatcattaccGggccactaaggtggcctttt	12	10	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70389250	A	A	70389250	3	1	61	1	0	0	0	0	1	0	0	0	10558	1116	39	4	1876	4	NLGN3	23	70389250	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	34280	70389250	84881310	6876	75121											
NAP1L2	4674	broad.mit.edu	37	chrX	72433664	72433666	+	In_Frame_Del	DEL	TCC	-	-													ctccagtagcctcaatgtcgTcctcctcctcctcctcctcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72433666	-	-	72433664	7	5	61	1	0	1	0	1	0	0	0	0	10251	1667	58	0	721	0	NAP1L2	23	72433664	In_Frame_Del	DEL	TCC	TCGA-17-Z031-01A-01W-0746-08	2044414	72433664	82836896	6877	75122											
NAP1L2	4674	broad.mit.edu	37	chrX	72434417	72434417	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactcaccgaaatatcagaAgcggcggtggtcggacctag	13	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72434417	C	C	72434417	1	2	61	0	1	0	0	0	0	0	0	0	10251	87	3	5		5	NAP1L2	23	72434417	5'UTR	SNP	A	TCGA-17-Z031-01A-01W-0746-08	753	72434417	82836143	6878	75123											
CDX4	1046	broad.mit.edu	37	chrX	72673314	72673314	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaaaacaatctccaagaaGcagaaaaagattaaatgcaa	5	7	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72673314	A	A	72673314	1	1	61	0	1	0	0	0	0	0	0	0	3214	986	34	4		4	CDX4	23	72673314	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	238897	72673314	82597246	6879	75124											
ZCCHC13	389874	broad.mit.edu	37	chrX	73524209	73524209	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccatggcagaggttcTcaatgtggttccaccaccct	12	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73524209	C	C	73524209	2	2	61	1	0	0	0	0	0	0	0	1	17708	1538	54	5		5	ZCCHC13	23	73524209	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	850895	73524209	81746351	6880	75125											
KIAA2022	340533	broad.mit.edu	37	chrX	73962657	73962657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaagggtgccagcttggCatatttgttgagctgattct	11	7	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73962657	A	A	73962657	3	1	61	1	0	0	0	0	1	0	0	0	8339	710	25	3	2823	3	KIAA2022	23	73962657	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	438448	73962657	81307903	6881	75126											
MAGEE1	57692	broad.mit.edu	37	chrX	75648955	75648955	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtgagggaccaggcacctCcgtgccgctcgccgccactg	14	16	0	1	rs141421631		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75648955	T	T	75648955	3	4	61	1	0	0	0	0	1	0	0	0	9277	855	30	4	634	4	MAGEE1	23	75648955	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1686298	75648955	79621605	6882	75127											
TBX22	50945	broad.mit.edu	37	chrX	79286130	79286131	+	Missense_Mutation	DNP	GG	TT	TT													cttggaatgccctgtccagaGgcatacctgcccaatgtcaa							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	79286131	TT	TT	79286130	3	4	61	1	0	0	0	0	1	0	0	0	15780	991	35	2	1113	2	TBX22	23	79286130	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	3637175	79286130	75984430	6883	75128											
HDX	139324	broad.mit.edu	37	chrX	83599427	83599427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtggaacttcaatcccCattaaacgatatttccttct	7	10	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83599427	A	A	83599427	3	1	61	1	0	0	0	0	1	0	0	0	7093	594	21	2	601	2	HDX	23	83599427	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	4313297	83599427	71671133	6884	75129											
DACH2	117154	broad.mit.edu	37	chrX	85559581	85559581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgataaccaggctggatatcCtatgtccttctctgaccatc	7	13	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85559581	T	T	85559581	1	4	61	0	1	0	0	0	0	0	0	0	4254	696	24	4		4	DACH2	23	85559581	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1960154	85559581	69710979	6885	75130											
DACH2	117154	broad.mit.edu	37	chrX	85769279	85769279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatttgtctgtttttcaaCagttcaagacccggcaggcc	8	10	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85769279	A	A	85769279	1	1	61	0	1	0	0	0	0	0	0	0	4254	493	17	3		3	DACH2	23	85769279	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	209698	85769279	69501281	6886	75131											
KLHL4	56062	broad.mit.edu	37	chrX	86877246	86877246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaataaaaaaccaagaattCctcctgcttccagctaatga	5	10	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86877246	A	A	86877246	3	1	61	1	0	0	0	0	1	0	0	0	8462	854	30	3	978	3	KLHL4	23	86877246	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1107967	86877246	68393314	6887	75132											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177571	89177571	+	Frame_Shift_Del	DEL	C	-	-													gcctgcccctgtggcccttgCcaaagggccagatgtcaaga							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89177571	-	-	89177571	7	5	61	1	0	1	0	1	0	0	0	0	15950	739	26	0	489	0	TGIF2LX	23	89177571	Frame_Shift_Del	DEL	C	TCGA-17-Z031-01A-01W-0746-08	2300325	89177571	66092989	6888	75133											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177587	89177587	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgccaaagggccagatgtCaagagagaagcaaccagatc	11	10	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177587	A	A	89177587	4	1	61	1	0	0	0	0	0	1	0	0	15950	838	29	3	505	3	TGIF2LX	23	89177587	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	16	89177587	66092973	6889	75134											
PCDH11X	27328	broad.mit.edu	37	chrX	91090765	91090765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgagatcttcactactGgcgctcgcattgatcgtgag	12	10	2	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91090765	T	T	91090765	3	4	61	1	0	0	0	0	1	0	0	0	11602	1348	47	2	264	2	PCDH11X	23	91090765	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1913178	91090765	64179795	6890	75135											
PCDH11X	27328	broad.mit.edu	37	chrX	91133250	91133250	+	Missense_Mutation	SNP	C	A	A													ttgatgtcaatgacaacaaaCcagttttcattgtccctcct							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91133250	A	A	91133250	3	1	61	1	0	0	0	0	1	0	0	0	11602	507	18	3	2017	3	PCDH11X	23	91133250	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	42485	91133250	64137310	6891	75136	339	2									
PCDH11X	27328	broad.mit.edu	37	chrX	91133253	91133253	+	Missense_Mutation	SNP	G	A	A													atgtcaatgacaacaaaccaGttttcattgtccctccttcc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91133253	A	A	91133253	3	1	61	1	0	0	0	0	1	0	0	0	11602	1029	36	4	2020	4	PCDH11X	23	91133253	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3	91133253	64137307	6892	75137	339	2									
PCDH11X	27328	broad.mit.edu	37	chrX	91873626	91873626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacaggcctcagccctctGctacagccctcctttagcac	7	18	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873626	A	A	91873626	3	1	61	1	0	0	0	0	1	0	0	0	11602	1319	46	4	3879	4	PCDH11X	23	91873626	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	740373	91873626	63396934	6893	75138											
NAP1L3	4675	broad.mit.edu	37	chrX	92927797	92927797	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatcactgctgaactcCtcatcctctgaattccattc	3	16	4	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92927797	G	G	92927797	3	3	61	1	0	0	0	0	1	0	0	0	10252	680	24	4	1017	4	NAP1L3	23	92927797	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1054171	92927797	62342763	6894	75139											
PCDH19	57526	broad.mit.edu	37	chrX	99551726	99551726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataagcctcgacatcagcaGcagtagcttcaatagacagc	8	12	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99551726	T	T	99551726	3	4	61	1	0	0	0	0	1	0	0	0	11608	971	34	3	454	3	PCDH19	23	99551726	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	6623929	99551726	55718834	6895	75140											
TRMT2B	79979	broad.mit.edu	37	chrX	100278330	100278330	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctcatccctaacccctctCcccaattgacacaaatattc	1	18	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100278330	G	G	100278330	1	3	61	0	1	0	0	0	0	0	0	0	16691	870	30	4		4	TRMT2B	23	100278330	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	726604	100278330	54992230	6896	75141											
TAF7L	54457	broad.mit.edu	37	chrX	100530248	100530248	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctgtaactcaagctgctCcagcacagactgaaaatgat	7	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100530248	A	A	100530248	4	1	61	1	0	0	0	0	0	1	0	0	15652	864	30	3	90	3	TAF7L	23	100530248	Nonsense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	251918	100530248	54740312	6897	75142											
NXF5	55998	broad.mit.edu	37	chrX	101092727	101092727	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcacactcctttaccctGcccaatcttctccatcacac	2	19	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101092727	T	T	101092727	1	4	61	0	1	0	0	0	0	0	0	0	10881	1334	46	3		3	NXF5	23	101092727	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	562479	101092727	54177833	6898	75143											
ARMCX5	64860	broad.mit.edu	37	chrX	101858468	101858468	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaaatcacgccaatacaAgagaattgatcagtgccaaa	6	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101858468	G	G	101858468	3	3	61	1	0	0	0	0	1	0	0	0	966	64	3	5	1401	5	ARMCX5	23	101858468	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	765741	101858468	53412092	6899	75144											
GPRASP2	114928	broad.mit.edu	37	chrX	101972045	101972045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttgtctgaaaatcctGctgtggcaaaaaaactattc	7	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101972045	T	T	101972045	3	4	61	1	0	0	0	0	1	0	0	0	6789	1319	46	3	2250	3	GPRASP2	23	101972045	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	113577	101972045	53298515	6900	75145											
RAB40AL	282808	broad.mit.edu	37	chrX	102192661	102192661	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaagaggcaggtgcccaggGagcaggcccaggcctacgcc	15	14	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102192661	T	T	102192661	4	4	61	1	0	0	0	0	0	1	0	0	13048	1175	41	3	417	3	RAB40AL	23	102192661	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	220616	102192661	53077899	6901	75146											
MORF4L2	9643	broad.mit.edu	37	chrX	102931491	102931491	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactcctccagaattgcatcTacatttttcttggcagggag	8	10	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102931491	A	A	102931491	2	1	61	1	0	0	0	0	0	0	0	1	9801	1509	53	5		5	MORF4L2	23	102931491	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	738830	102931491	52339069	6902	75147											
MCART6	401612	broad.mit.edu	37	chrX	103348942	103348942	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtattaggcaacctagCcaaagaagtaagctatatag	10	7	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103348942	A	A	103348942	1	1	61	0	1	0	0	0	0	0	0	0	9464	754	26	3		3	MCART6	23	103348942	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	417451	103348942	51921618	6903	75148											
NRK	203447	broad.mit.edu	37	chrX	105190460	105190460	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccctgccaaagaatgtaAgataacaccttcagattcct	6	11	1	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105190460	G	G	105190460	1	3	61	0	1	0	0	0	0	0	0	0	10750	87	3	5		5	NRK	23	105190460	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	1841518	105190460	50080100	6904	75149											
MUM1L1	139221	broad.mit.edu	37	chrX	105450166	105450166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctttgtcatcagatatGctcattatgcccaaagcttt	5	11	4	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105450166	T	T	105450166	3	4	61	1	0	0	0	0	1	0	0	0	10080	1319	46	3	743	3	MUM1L1	23	105450166	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	259706	105450166	49820394	6905	75150											
CXorf57	55086	broad.mit.edu	37	chrX	105921297	105921297	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattaacagcttatgtgatActaaagtcaagtaaatattt	5	4	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105921297	G	G	105921297	1	3	61	0	1	0	0	0	0	0	0	0	4146	406	14	5		5	CXorf57	23	105921297	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	471131	105921297	49349263	6906	75151											
RNF128	79589	broad.mit.edu	37	chrX	105937175	105937175	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggacgtgagtggacaatggtGactgatagttggaaatatca	14	4	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105937175	A	A	105937175	1	1	61	0	1	0	0	0	0	0	0	0	13547	1305	45	4		4	RNF128	23	105937175	5'UTR	SNP	G	TCGA-17-Z031-01A-01W-0746-08	15878	105937175	49333385	6907	75152											
TBC1D8B	54885	broad.mit.edu	37	chrX	106046140	106046140	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgaagctgtggctgatGgaaaggtccaacgactactt	13	9	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106046140	A	A	106046140	3	1	61	1	0	0	0	0	1	0	0	0	15748	1348	47	4	59	4	TBC1D8B	23	106046140	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	108965	106046140	49224420	6908	75153											
VSIG1	340547	broad.mit.edu	37	chrX	107316255	107316255	+	Intron	DEL	C	-	-													tgattgtgttctggtctactCcccaaattctaaaagccagc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107316255	-	-	107316255	6	5	61	0	1	1	0	1	0	0	0	0	17349	870	30	0		0	VSIG1	23	107316255	Intron	DEL	C	TCGA-17-Z031-01A-01W-0746-08	1270115	107316255	47954305	6909	75154											
COL4A6	1288	broad.mit.edu	37	chrX	107408244	107408244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatggcccagggggacctGggggtccagcggggcctggg	22	10	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107408244	T	T	107408244	3	4	61	1	0	0	0	0	1	0	0	0	3727	1348	47	2	1267	2	COL4A6	23	107408244	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	91989	107408244	47862316	6910	75155											
COL4A6	1288	broad.mit.edu	37	chrX	107479355	107479355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcccctatgaagcctgcCacggccaacagtagcaacac	8	15	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107479355	A	A	107479355	1	1	61	0	1	0	0	0	0	0	0	0	3727	609	21	2		2	COL4A6	23	107479355	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	71111	107479355	47791205	6911	75156											
COL4A5	1287	broad.mit.edu	37	chrX	107863584	107863584	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagtccagggatccccGgagcacctggtcctatagga	14	12	0	0	rs104886189		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107863584	A	A	107863584	3	1	61	1	0	0	0	0	1	0	0	0	3726	1117	39	4	2727	4	COL4A5	23	107863584	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	384229	107863584	47406976	6912	75157											
GUCY2F	2986	broad.mit.edu	37	chrX	108673499	108673499	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttggagaacagatttatTttagtgggaatttacataaa	8	3	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108673499	G	G	108673499	1	3	61	0	1	0	0	0	0	0	0	0	6963	1856	64	5		5	GUCY2F	23	108673499	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	809915	108673499	46597061	6913	75158											
CAPN6	827	broad.mit.edu	37	chrX	110494645	110494645	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatttcatctgcggctgggtCacagaccccgtgcctgacaa	10	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110494645	A	A	110494645	1	1	61	0	1	0	0	0	0	0	0	0	2656	841	29	3		3	CAPN6	23	110494645	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1821146	110494645	44775915	6914	75159											
LRCH2	57631	broad.mit.edu	37	chrX	114400181	114400181	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaggaactgctacatcTtctgtgttggggtcaacaaa	10	8	4	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114400181	G	G	114400181	3	3	61	1	0	0	0	0	1	0	0	0	9020	1606	56	5	1113	5	LRCH2	23	114400181	Missense_Mutation	SNP	T	TCGA-17-Z031-01A-01W-0746-08	3905536	114400181	40870379	6915	75160											
PLS3	5358	broad.mit.edu	37	chrX	114863488	114863488	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaattaattgtgaatcaAcaaaattactttaattaata	3	3	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114863488	G	G	114863488	1	3	61	0	1	0	0	0	0	0	0	0	12203	58	2	5		5	PLS3	23	114863488	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	463307	114863488	40407072	6916	75161											
KLHL13	90293	broad.mit.edu	37	chrX	117079539	117079539	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcctcttccacgagagatCtgaaagtttttttacataag	6	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117079539	A	A	117079539	5	1	61	1	0	0	0	0	0	0	1	0	8440	927	32	3	1893	3	KLHL13	23	117079539	Splice_Site	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2216051	117079539	38191021	6917	75162											
DOCK11	139818	broad.mit.edu	37	chrX	117810668	117810668	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggtgaaaagtttggtacgGagaatgtcaaaataattcag	11	3	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117810668	T	T	117810668	4	4	61	1	0	0	0	0	0	1	0	0	4726	1175	41	3	5618	3	DOCK11	23	117810668	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	731129	117810668	37459892	6918	75163											
NKAP	79576	broad.mit.edu	37	chrX	119068556	119068556	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattacaattaagaaaaaaaTtttttaactctaaaaccgta	2	6	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119068556	C	C	119068556	1	2	61	0	1	0	0	0	0	0	0	0	10534	1508	52	5		5	NKAP	23	119068556	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	1257888	119068556	36202004	6919	75164											
ATP1B4	23439	broad.mit.edu	37	chrX	119504440	119504440	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgaaatctgaataagcaagGacatactgaatctgaggaat	10	5	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119504440	A	A	119504440	1	1	61	0	1	0	0	0	0	0	0	0	1139	1189	41	4		4	ATP1B4	23	119504440	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	435884	119504440	35766120	6920	75165											
GRIA3	2892	broad.mit.edu	37	chrX	122488701	122488701	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttctagccaccccactgaTtgtgcaattgaaaatgtcct	7	11	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122488701	C	C	122488701	1	2	61	0	1	0	0	0	0	0	0	0	6835	1508	52	5		5	GRIA3	23	122488701	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	2984261	122488701	32781859	6921	75166											
THOC2	57187	broad.mit.edu	37	chrX	122745370	122745370	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttatcatgcctggactcctAtaagaaatagtagaattagc	7	7	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122745370	T	T	122745370	1	4	61	0	1	0	0	0	0	0	0	0	15988	464	16	5		5	THOC2	23	122745370	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	256669	122745370	32525190	6922	75167											
ODZ1	10178	broad.mit.edu	37	chrX	123517708	123517708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caataatgacctgaaagtcaGggtaagtgtcatgatagata	10	5	2	4			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123517708	T	T	123517708	3	4	61	1	0	0	0	0	1	0	0	0	10929	1000	35	2	1137	2	ODZ1	23	123517708	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	772338	123517708	31752852	6923	75168											
ODZ1	10178	broad.mit.edu	37	chrX	123525850	123525850	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggacaattagggccattttCgatagtctcattcagaaact	8	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123525850	A	A	123525850	1	1	61	0	1	0	0	0	0	0	0	0	10929	899	31	3		3	ODZ1	23	123525850	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	8142	123525850	31744710	6924	75169											
ACTRT1	139741	broad.mit.edu	37	chrX	127186093	127186093	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggagctgatgacatggcgGggtccaatctctccagacag	13	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127186093	T	T	127186093	2	4	61	1	0	0	0	0	0	0	0	1	218	1219	43	2		2	ACTRT1	23	127186093	Silent	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3660243	127186093	28084467	6925	75170											
XPNPEP2	7512	broad.mit.edu	37	chrX	128896628	128896628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagcctgggcttgggcCctctcccagcttaatgccac	11	15	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128896628	A	A	128896628	1	1	61	0	1	0	0	0	0	0	0	0	17570	638	22	2		2	XPNPEP2	23	128896628	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1710535	128896628	26373932	6926	75171											
GPR119	139760	broad.mit.edu	37	chrX	129519479	129519479	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctctccagctgaaattcTcatgggccaggggcagagga	12	10	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129519479	G	G	129519479	1	3	61	0	1	0	0	0	0	0	0	0	6699	1566	54	5		5	GPR119	23	129519479	5'Flank	SNP	T	TCGA-17-Z031-01A-01W-0746-08	622851	129519479	25751081	6927	75172											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217303	130217303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggtggcgtccactgtcCcaggggacactctcctcagc	12	15	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130217303	A	A	130217303	1	1	61	0	1	0	0	0	0	0	0	0	885	638	22	2		2	ARHGAP36	23	130217303	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	697824	130217303	25053257	6928	75173											
IGSF1	3547	broad.mit.edu	37	chrX	130407652	130407652	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatcccctttacccagctCaggtgattagagaccaagga	9	11	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130407652	A	A	130407652	1	1	61	0	1	0	0	0	0	0	0	0	7666	841	29	3		3	IGSF1	23	130407652	3'UTR	SNP	C	TCGA-17-Z031-01A-01W-0746-08	190349	130407652	24862908	6929	75174											
IGSF1	3547	broad.mit.edu	37	chrX	130419516	130419516	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagaggagagctctaCtttaattgaggtttccctgt	11	8	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130419516	T	T	130419516	1	4	61	0	1	0	0	0	0	0	0	0	7666	580	20	4		4	IGSF1	23	130419516	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	11864	130419516	24851044	6930	75175											
IGSF1	3547	broad.mit.edu	37	chrX	130543833	130543833	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtattcaaaggcttctctCtattttcactgttccatctt	4	11	5	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130543833	A	A	130543833	1	1	61	0	1	0	0	0	0	0	0	0	7666	928	32	3		3	IGSF1	23	130543833	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	124317	130543833	24726727	6931	75176											
PHF6	84295	broad.mit.edu	37	chrX	133549266	133549266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtagttcgtatgttaaaGcaaagtatatatttgactta	7	3	0	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133549266	A	A	133549266	1	1	61	0	1	0	0	0	0	0	0	0	11933	986	34	4		4	PHF6	23	133549266	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	3005433	133549266	21721294	6932	75177											
SAGE1	55511	broad.mit.edu	37	chrX	134994548	134994548	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtcaagagacaatttgttGaatttaccatcaaggaagca	8	6	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134994548	T	T	134994548	4	4	61	1	0	0	0	0	0	1	0	0	13920	1291	45	3	2660	3	SAGE1	23	134994548	Nonsense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	1445282	134994548	20276012	6933	75178											
SAGE1	55511	broad.mit.edu	37	chrX	134994598	134994598	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaaaaaggaactgtgctAttgttttaagcacttgcgcc	10	8	0	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134994598	G	G	134994598	1	3	61	0	1	0	0	0	0	0	0	0	13920	464	16	5		5	SAGE1	23	134994598	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	50	134994598	20275962	6934	75179											
GPR112	139378	broad.mit.edu	37	chrX	135428676	135428676	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaattttaaccacacctaTgtagcacattggacttcaga	5	9	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135428676	C	C	135428676	2	2	61	1	0	0	0	0	0	0	0	1	6694	1471	51	5		5	GPR112	23	135428676	Silent	SNP	T	TCGA-17-Z031-01A-01W-0746-08	434078	135428676	19841884	6935	75180											
HTATSF1	27336	broad.mit.edu	37	chrX	135582721	135582721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacatacatttagaaaatcaAcattgcattcacctaagtta	3	8	2	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135582721	T	T	135582721	1	4	61	0	1	0	0	0	0	0	0	0	7503	58	2	5		5	HTATSF1	23	135582721	Intron	SNP	A	TCGA-17-Z031-01A-01W-0746-08	154045	135582721	19687839	6936	75181											
HTATSF1	27336	broad.mit.edu	37	chrX	135593311	135593311	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaaaaagaatctgaagaGggctgccccaaaagagggtt	12	8	1	5			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135593311	T	T	135593311	3	4	61	1	0	0	0	0	1	0	0	0	7503	991	35	2	1441	2	HTATSF1	23	135593311	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	10590	135593311	19677249	6937	75182											
VGLL1	51442	broad.mit.edu	37	chrX	135618477	135618477	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgatgtacttgacacacTtggacacttatatgtttgct	7	8	0	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135618477	A	A	135618477	1	1	61	0	1	0	0	0	0	0	0	0	17285	1624	56	5		5	VGLL1	23	135618477	Intron	SNP	T	TCGA-17-Z031-01A-01W-0746-08	25166	135618477	19652083	6938	75183											
FGF13	2258	broad.mit.edu	37	chrX	138193047	138193047	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcgtcctgaaatctagCgttccagtggtggcttccca	10	12	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138193047	T	T	138193047	1	4	61	0	1	0	0	0	0	0	0	0	5899	783	27	4		4	FGF13	23	138193047	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	2574570	138193047	17077513	6939	75184											
CXorf66	347487	broad.mit.edu	37	chrX	139038576	139038576	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctagcttacataatttttCtaggctgcctttcttatgtg	7	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139038576	T	T	139038576	3	4	61	1	0	0	0	0	1	0	0	0	4151	922	32	4	524	4	CXorf66	23	139038576	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	845529	139038576	16231984	6940	75185											
MAGEC3	139081	broad.mit.edu	37	chrX	140968993	140968993	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcctcatcctctaCtctgattcttggtgctcatg	5	16	5	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140968993	T	T	140968993	1	4	61	0	1	0	0	0	0	0	0	0	9274	580	20	4		4	MAGEC3	23	140968993	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	1930417	140968993	14301567	6941	75186											
MAGEC3	139081	broad.mit.edu	37	chrX	140983193	140983193	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagacctggccaatcctcaaGgtaagggccctaagggagaa	12	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140983193	A	A	140983193	3	1	61	1	0	0	0	0	1	0	0	0	9274	1014	35	4	1066	4	MAGEC3	23	140983193	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	14200	140983193	14287367	6942	75187											
MAGEC1	9947	broad.mit.edu	37	chrX	140993473	140993473	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggcgacgacacccagtctCctctccagaattctcagagt	9	14	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140993473	T	T	140993473	3	4	61	1	0	0	0	0	1	0	0	0	9272	855	30	4	289	4	MAGEC1	23	140993473	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	10280	140993473	14277087	6943	75188											
SLITRK4	139065	broad.mit.edu	37	chrX	142717182	142717183	+	Missense_Mutation	DNP	GG	CT	CT													gacggcttatttaaaagtttGggacataagatttcattttt							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	142717183	CT	CT	142717182	3	2	61	1	0	0	0	0	1	0	0	0	14859	1335	47	4	774	4	SLITRK4	23	142717182	Missense_Mutation	DNP	GG	TCGA-17-Z031-01A-01W-0746-08	1723709	142717182	12553378	6944	75189											
SPANXN2	494119	broad.mit.edu	37	chrX	142803690	142803690	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctaacaatcttacctcatCattttttttgttattggatt	3	8	3	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142803690	A	A	142803690	3	1	61	1	0	0	0	0	1	0	0	0	15107	826	29	3	477	3	SPANXN2	23	142803690	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	86508	142803690	12466870	6945	75190											
SLITRK2	84631	broad.mit.edu	37	chrX	144905636	144905636	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaatctcctgctaagcatGcaggggagatactaaaattt	10	8	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144905636	T	T	144905636	3	4	61	1	0	0	0	0	1	0	0	0	14857	1319	46	3	1695	3	SLITRK2	23	144905636	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2101946	144905636	10364924	6946	75191											
SLITRK2	84631	broad.mit.edu	37	chrX	144905726	144905726	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgtcttgtcaatgaatcacAatacagacacacctcggtcg	7	13	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144905726	T	T	144905726	3	4	61	1	0	0	0	0	1	0	0	0	14857	130	5	5	1785	5	SLITRK2	23	144905726	Missense_Mutation	SNP	A	TCGA-17-Z031-01A-01W-0746-08	90	144905726	10364834	6947	75192											
FMR1	2332	broad.mit.edu	37	chrX	147024765	147024765	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaaaaaagctatgtgactGatgatggtcaaggaatgggt	14	3	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147024765	T	T	147024765	3	4	61	1	0	0	0	0	1	0	0	0	6018	1290	45	3	1444	3	FMR1	23	147024765	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2119039	147024765	8245795	6948	75193											
AFF2	2334	broad.mit.edu	37	chrX	147919381	147919381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatctagactctcttgcCcctcagaatagcaatataaa	4	10	3	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147919381	A	A	147919381	1	1	61	0	1	0	0	0	0	0	0	0	357	638	22	2		2	AFF2	23	147919381	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	894616	147919381	7351179	6949	75194											
TMEM185A	84548	broad.mit.edu	37	chrX	148690401	148690401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggcatgaagaccaggagCcagaaatggcttcctctctc	11	12	1	3			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148690401	A	A	148690401	3	1	61	1	0	0	0	0	1	0	0	0	16230	740	26	3	736	3	TMEM185A	23	148690401	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	771020	148690401	6580159	6950	75195											
CXorf40B	541578	broad.mit.edu	37	chrX	149101815	149101815	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagccctaggcgttgtctGcgcatttggtacattgtcac	11	11	2	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149101815	C	C	149101815	1	2	61	0	1	0	0	0	0	0	0	0	4142	1334	46	4		4	CXorf40B	23	149101815	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	411414	149101815	6168745	6951	75196											
CXorf40B	541578	broad.mit.edu	37	chrX	149101928	149101928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagtctctccaccagcagCtcccgacaggcatcgccttc	8	19	1	0			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149101928	A	A	149101928	3	1	61	1	0	0	0	0	1	0	0	0	4142	796	28	3	319	3	CXorf40B	23	149101928	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	113	149101928	6168632	6952	75197											
GABRE	2564	broad.mit.edu	37	chrX	151127947	151127947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagactggattggttctgGgtatggagaactcacacgag	13	8	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151127947	A	A	151127947	1	1	61	0	1	0	0	0	0	0	0	0	6230	1247	43	4		4	GABRE	23	151127947	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	2026019	151127947	4142613	6953	75198											
GABRA3	2556	broad.mit.edu	37	chrX	151535868	151535868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacacataatcatgacacGtgctcaggccattataatat	6	9	2	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151535868	T	T	151535868	1	4	61	0	1	0	0	0	0	0	0	0	6222	1160	40	3		3	GABRA3	23	151535868	Intron	SNP	G	TCGA-17-Z031-01A-01W-0746-08	407921	151535868	3734692	6954	75199											
GABRQ	55879	broad.mit.edu	37	chrX	151821226	151821226	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccacctcagagcaggccCggcacagctatggtgttcgc	11	16	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151821226	T	T	151821226	3	4	61	1	0	0	0	0	1	0	0	0	6235	643	23	4	1415	4	GABRQ	23	151821226	Missense_Mutation	SNP	C	TCGA-17-Z031-01A-01W-0746-08	285358	151821226	3449334	6955	75200											
MAGEA1	4100	broad.mit.edu	37	chrX	152488336	152488336	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccaaatttgattgtcacGttggcagccacaggtaagac	10	10	1	2			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152488336	T	T	152488336	1	4	61	0	1	0	0	0	0	0	0	0	9251	1160	40	3		3	MAGEA1	23	152488336	5'Flank	SNP	G	TCGA-17-Z031-01A-01W-0746-08	667110	152488336	2782224	6956	75201											
ATP2B3	492	broad.mit.edu	37	chrX	152825187	152825187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgactgcctcctctccatagGactctcctctcaaagccgtg	7	16	3	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152825187	T	T	152825187	3	4	61	1	0	0	0	0	1	0	0	0	1145	1188	41	3	2688	3	ATP2B3	23	152825187	Missense_Mutation	SNP	G	TCGA-17-Z031-01A-01W-0746-08	336851	152825187	2445373	6957	75202											
HCFC1	3054	broad.mit.edu	37	chrX	153224764	153224764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggaaatcccacccgccCcagtgaccactcctcaccgt	6	19	1	1			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153224764	A	A	153224764	1	1	61	0	1	0	0	0	0	0	0	0	7057	638	22	2		2	HCFC1	23	153224764	Intron	SNP	C	TCGA-17-Z031-01A-01W-0746-08	399577	153224764	2045796	6958	75203											
NLGN4Y	22829	broad.mit.edu	37	chrY	16952514	16952515	+	Frame_Shift_Ins	INS	-	A	A													gagatattccagtatgtttcINSaacaaccacaaaggttcctc							TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16952515	A	A	16952514	7	5	61	1	0	1	1	0	0	0	0	0	10560	838	29	0	1995	0	NLGN4Y	24	16952514	Frame_Shift_Ins	INS	-	TCGA-17-Z031-01A-01W-0746-08		16952514	42421052	6959	75204											
MMEL1	79258	broad.mit.edu	37	chr1	2537095	2537095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgtgaccctgggcaagGggcccggggtccccgcagcc	17	14	0	1	rs78506337	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2537095	A	A	2537095	1	1	62	0	1	0	0	0	0	0	0	0	9739	1247	43	4		4	MMEL1	1	2537095	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08		2537095	246713526	1	75205											
CCDC27	148870	broad.mit.edu	37	chr1	3677865	3677865	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcactgcctgtctgagctGgagatacaggttcagaagaa	12	8	3	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3677865	T	T	3677865	2	4	62	1	0	0	0	0	0	0	0	1	2828	1335	47	2		2	CCDC27	1	3677865	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1140770	3677865	245572756	2	75206											
PER3	8863	broad.mit.edu	37	chr1	7898122	7898123	+	Intron	INS	-	GT	GT													tcaaaaaagacaaataattcINSgtgtgtgtgtgtgtgtaaaa					rs146980483	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	7898123	GT	GT	7898122	6	5	62	0	1	1	1	0	0	0	0	0	11825	899	31	0		0	PER3	1	7898122	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	4220257	7898122	241352499	3	75207											
MTOR	2475	broad.mit.edu	37	chr1	11288885	11288885	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgactggtctcggaagatcCgcatcagggccaccatggac	13	12	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11288885	T	T	11288885	3	4	62	1	0	0	0	0	1	0	0	0	10048	652	23	4	4939	4	MTOR	1	11288885	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3390763	11288885	237961736	4	75208											
PTCHD2	57540	broad.mit.edu	37	chr1	11591085	11591085	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtggggcccagtgcctgcCttcaggtgcgtggggtgtgg	21	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11591085	T	T	11591085	3	4	62	1	0	0	0	0	1	0	0	0	12839	681	24	4	3282	4	PTCHD2	1	11591085	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	302200	11591085	237659536	5	75209											
NBPF1	55672	broad.mit.edu	37	chr1	16901504	16901504	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaacatgacagctgccgcAccctgtgtctaagctgggtt	11	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16901504	T	T	16901504	1	4	62	0	1	0	0	0	0	0	0	0	10286	174	6	5		5	NBPF1	1	16901504	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	5310419	16901504	232349117	6	75210											
PLA2G2E	30814	broad.mit.edu	37	chr1	20252338	20252338	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgaggtttaaagatggaGtgttggtaggacttgttctt	14	2	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20252338	T	T	20252338	1	4	62	0	1	0	0	0	0	0	0	0	12093	1044	36	3		3	PLA2G2E	1	20252338	5'Flank	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3350834	20252338	228998283	7	75211											
HP1BP3	50809	broad.mit.edu	37	chr1	21073736	21073736	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacaacacaggttggcaacGcattagcccactttatatgt	8	10	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21073736	A	A	21073736	1	1	62	0	1	0	0	0	0	0	0	0	7395	1102	38	4		4	HP1BP3	1	21073736	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	821398	21073736	228176885	8	75212											
EIF4G3	8672	broad.mit.edu	37	chr1	21226345	21226345	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttcactttttttaggtcaGaggggtctctttcaggatga	10	7	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21226345	C	C	21226345	3	2	62	1	0	0	0	0	1	0	0	0	5080	942	33	4	3169	4	EIF4G3	1	21226345	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	152609	21226345	228024276	9	75213											
NBPF3	84224	broad.mit.edu	37	chr1	21806353	21806353	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtatgtgtAtgtctttctctttcatcctt	10	6	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21806353	G	G	21806353	1	3	62	0	1	0	0	0	0	0	0	0	10292	464	16	5		5	NBPF3	1	21806353	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	580008	21806353	227444268	10	75214											
EYA3	2140	broad.mit.edu	37	chr1	28345094	28345094	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccattgagaacagggcaGgagaacaaatgcaatagaaa	10	7	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28345094	A	A	28345094	1	1	62	0	1	0	0	0	0	0	0	0	5373	1015	35	4		4	EYA3	1	28345094	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6538741	28345094	220905527	11	75215											
EPB41	2035	broad.mit.edu	37	chr1	29319783	29319783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attattataggtaaaagcatAtacagcatgttttgtgaaat	7	3	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29319783	G	G	29319783	1	3	62	0	1	0	0	0	0	0	0	0	5193	464	16	5		5	EPB41	1	29319783	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	974689	29319783	219930838	12	75216											
PTPRU	10076	broad.mit.edu	37	chr1	29598339	29598339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatgctgcaggaggactAggaagcagaatgcttctgcc	13	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29598339	G	G	29598339	1	3	62	0	1	0	0	0	0	0	0	0	12921	435	15	5		5	PTPRU	1	29598339	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	278556	29598339	219652282	13	75217											
CSMD2	114784	broad.mit.edu	37	chr1	34138411	34138411	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgcagttcaccaatatcTgctgttctgcagccaccgct	7	13	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34138411	C	C	34138411	1	2	62	0	1	0	0	0	0	0	0	0	3979	1595	55	5		5	CSMD2	1	34138411	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4540072	34138411	215112210	14	75218											
C1orf94	84970	broad.mit.edu	37	chr1	34636608	34636608	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcttgccctattcaatGcatcttcctctctgccacca	4	17	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34636608	A	A	34636608	1	1	62	0	1	0	0	0	0	0	0	0	2093	1334	46	4		4	C1orf94	1	34636608	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	498197	34636608	214614013	15	75219											
ST3GAL3	6487	broad.mit.edu	37	chr1	44232980	44232980	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatggcatgagtgaaaaccAggggaagatggatgtggctg	17	5	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44232980	G	G	44232980	1	3	62	0	1	0	0	0	0	0	0	0	15334	203	7	5		5	ST3GAL3	1	44232980	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	9596372	44232980	205017641	16	75220											
AGBL4	84871	broad.mit.edu	37	chr1	49289670	49289670	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtatatgtgcaCatgtcattaggatagtttcc	11	5	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49289670	G	G	49289670	1	3	62	0	1	0	0	0	0	0	0	0	377	493	17	4		4	AGBL4	1	49289670	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5056690	49289670	199960951	17	75221											
AGBL4	84871	broad.mit.edu	37	chr1	50207739	50207739	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagggcaattaggcaggagAaggaaataaaaggcattcaa	12	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50207739	G	G	50207739	1	3	62	0	1	0	0	0	0	0	0	0	377	261	9	5		5	AGBL4	1	50207739	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	918069	50207739	199042882	18	75222											
AGBL4	84871	broad.mit.edu	37	chr1	50223160	50223160	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggatcttcctagagacttGtagggctcagaagacagtaa	11	7	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50223160	C	C	50223160	1	2	62	0	1	0	0	0	0	0	0	0	377	1392	48	4		4	AGBL4	1	50223160	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	15421	50223160	199027461	19	75223											
EPS15	2060	broad.mit.edu	37	chr1	51944029	51944029	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctatgtgtgtctctgcacAtgagatgggtctcctgaata	11	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51944029	G	G	51944029	1	3	62	0	1	0	0	0	0	0	0	0	5234	232	8	5		5	EPS15	1	51944029	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1720869	51944029	197306592	20	75224											
RAB3B	5865	broad.mit.edu	37	chr1	52431995	52431995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaacactttcttcatccCtttattacatcgcttttatc	1	12	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52431995	A	A	52431995	1	1	62	0	1	0	0	0	0	0	0	0	13040	696	24	2		2	RAB3B	1	52431995	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	487966	52431995	196818626	21	75225											
GLIS1	148979	broad.mit.edu	37	chr1	54129267	54129267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctcattgcccttcacGgctgtgtgccacagctccct	8	18	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54129267	T	T	54129267	1	4	62	0	1	0	0	0	0	0	0	0	6509	1131	39	1		1	GLIS1	1	54129267	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1697272	54129267	195121354	22	75226											
DOCK7	85440	broad.mit.edu	37	chr1	62958218	62958218	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcctcccgtcttagcctctCaaagtgctgagattacaggc	8	13	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62958218	G	G	62958218	1	3	62	0	1	0	0	0	0	0	0	0	4732	841	29	4		4	DOCK7	1	62958218	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8828951	62958218	186292403	23	75227											
DOCK7	85440	broad.mit.edu	37	chr1	63056273	63056273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaaataatgataataatgTagtatgataaatgctgtgaa	8	2	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63056273	A	A	63056273	1	1	62	0	1	0	0	0	0	0	0	0	4732	1653	57	5		5	DOCK7	1	63056273	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	98055	63056273	186194348	24	75228											
CACHD1	57685	broad.mit.edu	37	chr1	65027384	65027384	+	Intron	DEL	C	-	-													ccattgtctacaatttttttCtttttaattagctaggagtg					rs55655337		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65027384	-	-	65027384	6	5	62	0	1	1	0	1	0	0	0	0	2563	928	32	0		0	CACHD1	1	65027384	Intron	DEL	C	TCGA-17-Z032-01A-01W-0746-08	1971111	65027384	184223237	25	75229											
DNAJC6	9829	broad.mit.edu	37	chr1	65749731	65749731	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggtcccggggtccccTttttacctcagaatcgcttt	10	14	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65749731	C	C	65749731	1	2	62	0	1	0	0	0	0	0	0	0	4693	1624	56	5		5	DNAJC6	1	65749731	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	722347	65749731	183500890	26	75230											
SGIP1	84251	broad.mit.edu	37	chr1	67101257	67101257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaacttttcctacttagGttagaaatacaaacattttt	4	7	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67101257	T	T	67101257	1	4	62	0	1	0	0	0	0	0	0	0	14319	1276	44	3		3	SGIP1	1	67101257	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1351526	67101257	182149364	27	75231											
NEGR1	257194	broad.mit.edu	37	chr1	72176038	72176038	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattgagctaccatatgatGcagcaatcccactgctgggc	9	11	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72176038	A	A	72176038	1	1	62	0	1	0	0	0	0	0	0	0	10412	1334	46	4		4	NEGR1	1	72176038	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5074781	72176038	177074583	28	75232											
TNNI3K	51086	broad.mit.edu	37	chr1	74898583	74898583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctggctctacctcttccCagctatgatacaggacactg	7	14	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74898583	A	A	74898583	1	1	62	0	1	0	0	0	0	0	0	0	16452	609	21	2		2	TNNI3K	1	74898583	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2722545	74898583	174352038	29	75233											
SLC44A5	204962	broad.mit.edu	37	chr1	76069438	76069439	+	Intron	INS	-	TT	TT													atgtggagcattttttcatgINStttttttttttttttttgct					rs57844833		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	76069439	TT	TT	76069438	6	5	62	0	1	1	1	0	0	0	0	0	14753	1392	48	0		0	SLC44A5	1	76069438	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	1170855	76069438	173181183	30	75234											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77452269	77452269	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgtaaattagttcaacCattgtggaagacagtgtggt	13	4	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77452269	T	T	77452269	1	4	62	0	1	0	0	0	0	0	0	0	15345	609	21	4		4	ST6GALNAC5	1	77452269	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1382831	77452269	171798352	31	75235											
COL24A1	255631	broad.mit.edu	37	chr1	86469797	86469797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaagttccatttgtcagCaaaaaaagaccaacaaagtc	6	9	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86469797	A	A	86469797	1	1	62	0	1	0	0	0	0	0	0	0	3715	725	25	3		3	COL24A1	1	86469797	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	9017528	86469797	162780824	32	75236											
COL24A1	255631	broad.mit.edu	37	chr1	86559760	86559760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccattgcggaagacagtGtggcaattcctcaaagacct	9	12	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86559760	T	T	86559760	1	4	62	0	1	0	0	0	0	0	0	0	3715	1392	48	3		3	COL24A1	1	86559760	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	89963	86559760	162690861	33	75237											
CLCA2	9635	broad.mit.edu	37	chr1	86916226	86916227	+	Intron	DNP	TG	GT	GT													ataataacaagtgttgacacTgtgttttttatatatacagg							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	86916227	GT	GT	86916226	1	3	62	0	1	0	0	0	0	0	0	0	3489	1595	55	5		5	CLCA2	1	86916226	Intron	DNP	TG	TCGA-17-Z032-01A-01W-0746-08	356466	86916226	162334395	34	75238											
EVI5	7813	broad.mit.edu	37	chr1	93011524	93011524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatacacgatttaggcagccCcatgatcagagattttctga	8	9	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93011524	T	T	93011524	1	4	62	0	1	0	0	0	0	0	0	0	5331	638	22	4		4	EVI5	1	93011524	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	6095298	93011524	156239097	35	75239											
LPPR5	163404	broad.mit.edu	37	chr1	99380258	99380258	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtaaatcaacataaactgTgtggacatgctccagatata	7	7	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99380258	A	A	99380258	1	1	62	0	1	0	0	0	0	0	0	0	9015	1711	59	5		5	LPPR5	1	99380258	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	6368734	99380258	149870363	36	75240											
OLFM3	118427	broad.mit.edu	37	chr1	102414782	102414782	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttccctccctacctcacTgcaagctcctcttcaacctt	3	18	3	0	rs112556690	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102414782	C	C	102414782	1	2	62	0	1	0	0	0	0	0	0	0	10949	1595	55	5		5	OLFM3	1	102414782	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3034524	102414782	146835839	37	75241											
NTNG1	22854	broad.mit.edu	37	chr1	107810787	107810787	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatctgactgtacttcatatCcccttctagacattgccaca	4	13	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107810787	A	A	107810787	1	1	62	0	1	0	0	0	0	0	0	0	10799	870	30	3		3	NTNG1	1	107810787	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5396005	107810787	141439834	38	75242											
VAV3	10451	broad.mit.edu	37	chr1	108389573	108389573	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctacagaactctccacccTataatcaacagaatatataa	2	11	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108389573	C	C	108389573	1	2	62	0	1	0	0	0	0	0	0	0	17260	1537	53	5		5	VAV3	1	108389573	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	578786	108389573	140861048	39	75243											
KCND3	3752	broad.mit.edu	37	chr1	112385055	112385055	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcagtgccactctccctgGagaggtccagtgaggctctg	13	12	2	2	rs139674325	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112385055	T	T	112385055	1	4	62	0	1	0	0	0	0	0	0	0	8090	1189	41	3		3	KCND3	1	112385055	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3995482	112385055	136865566	40	75244											
KCND3	3752	broad.mit.edu	37	chr1	112462231	112462231	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctctgggattttattctaAgtacctcaatttgtccctta	7	9	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112462231	T	T	112462231	1	4	62	0	1	0	0	0	0	0	0	0	8090	87	3	5		5	KCND3	1	112462231	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	77176	112462231	136788390	41	75245											
LRIG2	9860	broad.mit.edu	37	chr1	113642778	113642778	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttataggtaaatgtttaatGaatttaattttgtttagtgg	8	0	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113642778	C	C	113642778	1	2	62	0	1	0	0	0	0	0	0	0	9032	1305	45	4		4	LRIG2	1	113642778	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1180547	113642778	135607843	42	75246											
ATP1A1	476	broad.mit.edu	37	chr1	116931663	116931663	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggccatttttgggcacttTgagcatggcgtggtatttct	12	7	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116931663	C	C	116931663	1	2	62	0	1	0	0	0	0	0	0	0	1132	1827	63	5		5	ATP1A1	1	116931663	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3288885	116931663	132318958	43	75247											
TRIM45	80263	broad.mit.edu	37	chr1	117664367	117664367	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccgggacgcccgcgggctCtggcccctcctcacaccaat	11	20	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117664367	T	T	117664367	1	4	62	0	1	0	0	0	0	0	0	0	16645	928	32	4		4	TRIM45	1	117664367	5'UTR	SNP	C	TCGA-17-Z032-01A-01W-0746-08	732704	117664367	131586254	44	75248											
SPAG17	200162	broad.mit.edu	37	chr1	118660472	118660472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcttgactctctaaatgcCactttctttctgtgcgtctc	7	12	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118660472	A	A	118660472	1	1	62	0	1	0	0	0	0	0	0	0	15095	609	21	2		2	SPAG17	1	118660472	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	996105	118660472	130590149	45	75249											
PDE4DIP	9659	broad.mit.edu	37	chr1	144915663	144915663	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcagaaaggacactgtaaGcttctggaggaaagaaatgc	12	6	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144915663	C	C	144915663	1	2	62	0	1	0	0	0	0	0	0	0	11737	986	34	4		4	PDE4DIP	1	144915663	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	26255191	144915663	104334958	46	75250											
NBPF9	400818	broad.mit.edu	37	chr1	145122707	145122707	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccagcagcatgtcaaaaaCgaatccaccacaatcaagca	6	14	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145122707	T	T	145122707	1	4	62	0	1	0	0	0	0	0	0	0	10294	551	19	4		4	NBPF9	1	145122707	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	207044	145122707	104127914	47	75251											
NBPF9	400818	broad.mit.edu	37	chr1	145207595	145207595	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttctttaacattgtctcAgattcattccttctgaaatc	4	9	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145207595	G	G	145207595	1	3	62	0	1	0	0	0	0	0	0	0	10294	203	7	5		5	NBPF9	1	145207595	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	84888	145207595	104043026	48	75252											
CHD1L	9557	broad.mit.edu	37	chr1	146765545	146765545	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagaagtgatcaccccacCgtcttgtagtcatatagccc	7	14	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146765545	T	T	146765545	1	4	62	0	1	0	0	0	0	0	0	0	3355	667	23	4		4	CHD1L	1	146765545	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1557950	146765545	102485076	49	75253											
GPR89B	51463	broad.mit.edu	37	chr1	147410750	147410750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcaaaataagttttctgCcttgtaaccagaaggaggtt	8	8	2	1	rs147317355	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147410750	A	A	147410750	1	1	62	0	1	0	0	0	0	0	0	0	6784	754	26	3		3	GPR89B	1	147410750	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	645205	147410750	101839871	50	75254											
LOC200030	200030	broad.mit.edu	37	chr1	148244097	148244097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtatttctagtagagacGgggtttcaccgtgttagcca	11	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148244097	T	T	148244097	1	4	62	0	1	0	0	0	0	0	0	0	8950	1131	39	1		1	LOC200030	1	148244097	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	833347	148244097	101006524	51	75255											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149783681	149783681	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctcgaagatgtcgttgacGaaggagttcatgatgcccat	12	9	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149783681	A	A	149783681	2	1	62	1	0	0	0	0	0	0	0	1	7247	1049	37	4		4	HIST2H2BF	1	149783681	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1539584	149783681	99466940	52	75256											
CTSK	1513	broad.mit.edu	37	chr1	150778253	150778253	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgccctcttttcctggtgCcctttcacctcaagaacaaa	5	15	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150778253	G	G	150778253	1	3	62	0	1	0	0	0	0	0	0	0	4071	754	26	4		4	CTSK	1	150778253	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	994572	150778253	98472368	53	75257											
HRNR	388697	broad.mit.edu	37	chr1	152192046	152192046	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacccatgtgggccattgcTtgaagaccaaccggagccag	12	12	0	3	rs149618092		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152192046	G	G	152192046	3	3	62	1	0	0	0	0	1	0	0	0	7426	1609	56	5	6497	5	HRNR	1	152192046	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1413793	152192046	97058575	54	75258											
FLG	2312	broad.mit.edu	37	chr1	152287978	152287978	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaagaaatgaaaatgcaCttttttatacatcttttttt	4	4	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152287978	T	T	152287978	1	4	62	0	1	0	0	0	0	0	0	0	5979	580	20	4		4	FLG	1	152287978	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	95932	152287978	96962643	55	75259											
S100A5	6276	broad.mit.edu	37	chr1	153512506	153512506	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtactcagactttggggtgGaggatgagggaacaatcacc	14	7	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153512506	C	C	153512506	1	2	62	0	1	0	0	0	0	0	0	0	13892	1189	41	4		4	S100A5	1	153512506	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1224528	153512506	95738115	56	75260											
ASH1L	55870	broad.mit.edu	37	chr1	155451020	155451020	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctttctcctactgcactGaatggggatttagcggtaga	11	8	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155451020	C	C	155451020	3	2	62	1	0	0	0	0	1	0	0	0	1045	1281	45	4	7357	4	ASH1L	1	155451020	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1938514	155451020	93799601	57	75261											
TTC24	164118	broad.mit.edu	37	chr1	156554994	156554994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggtcggcaaacgttcCggtgagggctgggccgggaa	20	8	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156554994	T	T	156554994	3	4	62	1	0	0	0	0	1	0	0	0	16818	652	23	4	1453	4	TTC24	1	156554994	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1103974	156554994	92695627	58	75262											
ARHGEF11	9826	broad.mit.edu	37	chr1	156937639	156937639	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttactatttgctctctaTgtaagtgactgtctcaaagt	6	8	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156937639	C	C	156937639	1	2	62	0	1	0	0	0	0	0	0	0	898	1479	51	5		5	ARHGEF11	1	156937639	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	382645	156937639	92312982	59	75263											
MNDA	4332	broad.mit.edu	37	chr1	158809340	158809340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatttccatcaatgctcCaagtcatgtgaagcagttac	6	12	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158809340	A	A	158809340	1	1	62	0	1	0	0	0	0	0	0	0	9770	609	21	2		2	MNDA	1	158809340	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1871701	158809340	90441281	60	75264											
COPA	1314	broad.mit.edu	37	chr1	160260037	160260037	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaacaaaggaacaagttaGagatttgtaagattgagaac	9	4	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160260037	C	C	160260037	1	2	62	0	1	0	0	0	0	0	0	0	3759	957	33	4		4	COPA	1	160260037	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1450697	160260037	88990584	61	75265											
CD84	8832	broad.mit.edu	37	chr1	160541189	160541189	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagtctcaaggaggagatTgccactgatgtctaatgatt	11	6	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160541189	A	A	160541189	1	1	62	0	1	0	0	0	0	0	0	0	3072	1827	63	5		5	CD84	1	160541189	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	281152	160541189	88709432	62	75266											
FCGR2C	9103	broad.mit.edu	37	chr1	161561512	161561512	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcgtaagaactgaggtttGcctttattcttctcatggct	8	8	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161561512	C	C	161561512	1	2	62	0	1	0	0	0	0	0	0	0	5840	1334	46	4		4	FCGR2C	1	161561512	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1020323	161561512	87689109	63	75267											
FAM78B	149297	broad.mit.edu	37	chr1	166039446	166039446	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactgcatgtctcagaggcgTgtgatccacacacagtcagg	11	12	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166039446	A	A	166039446	1	1	62	0	1	0	0	0	0	0	0	0	5680	1711	59	5		5	FAM78B	1	166039446	3'UTR	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4477934	166039446	83211175	64	75268											
FAM78B	149297	broad.mit.edu	37	chr1	166066795	166066798	+	Intron	DEL	ACCA	-	-													ccagccctttggggactgagAccaaccagccctttgggttg							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	166066798	-	-	166066795	6	5	62	0	1	1	0	1	0	0	0	0	5680	290	10	0		0	FAM78B	1	166066795	Intron	DEL	ACCA	TCGA-17-Z032-01A-01W-0746-08	27349	166066795	83183826	65	75269											
RCSD1	92241	broad.mit.edu	37	chr1	167666482	167666482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatggggatgaagtgttGccatccaagagcaaggcccc	15	9	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167666482	T	T	167666482	3	4	62	1	0	0	0	0	1	0	0	0	13293	1310	46	3	643	3	RCSD1	1	167666482	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1599687	167666482	81584139	66	75270											
MPZL1	9019	broad.mit.edu	37	chr1	167750378	167750379	+	Intron	DEL	AT	-	-													aattgaaaggagaaattgacAtattcacaatcatagttgga							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167750379	-	-	167750378	6	5	62	0	1	1	0	1	0	0	0	0	9843	232	8	0		0	MPZL1	1	167750378	Intron	DEL	AT	TCGA-17-Z032-01A-01W-0746-08	83896	167750378	81500243	67	75271											
SELP	6403	broad.mit.edu	37	chr1	169582862	169582862	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catagaatccagggtaacagGagcaggtgtagttcccgatg	13	8	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169582862	A	A	169582862	3	1	62	1	0	0	0	0	1	0	0	0	14132	1174	41	4	1993	4	SELP	1	169582862	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1832484	169582862	79667759	68	75272											
METTL13	51603	broad.mit.edu	37	chr1	171758143	171758143	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagattgttgggtttctgccCtattgtttggtcactgtggc	12	7	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171758143	T	T	171758143	1	4	62	0	1	0	0	0	0	0	0	0	9590	696	24	4		4	METTL13	1	171758143	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2175281	171758143	77492478	69	75273											
RABGAP1L	9910	broad.mit.edu	37	chr1	174200395	174200395	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcttccccacgtaatgaAgtagaggctttacgggcaat	10	9	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174200395	G	G	174200395	2	3	62	1	0	0	0	0	0	0	0	1	13073	69	3	5		5	RABGAP1L	1	174200395	Silent	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2442252	174200395	75050226	70	75274											
TNR	7143	broad.mit.edu	37	chr1	175393054	175393054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggggtctggatgtgaGtgtgccagccaaaagctatg	14	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175393054	T	T	175393054	1	4	62	0	1	0	0	0	0	0	0	0	16461	1044	36	3		3	TNR	1	175393054	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1192659	175393054	73857567	71	75275											
RFWD2	64326	broad.mit.edu	37	chr1	176075462	176075462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgtgggccactgtgccCagccaatttacaggttacag	12	11	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176075462	A	A	176075462	1	1	62	0	1	0	0	0	0	0	0	0	13368	609	21	2		2	RFWD2	1	176075462	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	682408	176075462	73175159	72	75276											
PAPPA2	60676	broad.mit.edu	37	chr1	176434251	176434251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttgcattctgacatgtGgatgtgccatgatatatttt	9	5	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176434251	T	T	176434251	1	4	62	0	1	0	0	0	0	0	0	0	11527	1363	47	2		2	PAPPA2	1	176434251	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	358789	176434251	72816370	73	75277											
PAPPA2	60676	broad.mit.edu	37	chr1	176490967	176490967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacttctagaaagatttGgggggactttgatgagactg	13	4	1	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176490967	T	T	176490967	1	4	62	0	1	0	0	0	0	0	0	0	11527	1363	47	2		2	PAPPA2	1	176490967	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	56716	176490967	72759654	74	75278											
PAPPA2	60676	broad.mit.edu	37	chr1	176638024	176638024	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatactgtcatctggaaggGtaatttatgcgtggagagaa	12	4	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176638024	A	A	176638024	1	1	62	0	1	0	0	0	0	0	0	0	11527	1276	44	4		4	PAPPA2	1	176638024	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	147057	176638024	72612597	75	75279											
ASTN1	460	broad.mit.edu	37	chr1	176914828	176914828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttccagtccctgcctgGgcaaagtaaaatctcattta	6	11	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176914828	T	T	176914828	1	4	62	0	1	0	0	0	0	0	0	0	1068	1247	43	2		2	ASTN1	1	176914828	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	276804	176914828	72335793	76	75280											
ASTN1	460	broad.mit.edu	37	chr1	177123382	177123382	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catggaatgttctgcaacagTcagaatcaatggataagatt	9	6	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177123382	C	C	177123382	1	2	62	0	1	0	0	0	0	0	0	0	1068	1682	58	5		5	ASTN1	1	177123382	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	208554	177123382	72127239	77	75281											
FAM5B	57795	broad.mit.edu	37	chr1	177245133	177245133	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcccatctgcattttcaGatcctcccccatctgtcact	3	16	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177245133	A	A	177245133	1	1	62	0	1	0	0	0	0	0	0	0	5644	957	33	4		4	FAM5B	1	177245133	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	121751	177245133	72005488	78	75282											
C1orf49	84066	broad.mit.edu	37	chr1	178489648	178489648	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttggatccctttggggtTcagaggacacccagactctt	11	10	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178489648	A	A	178489648	1	1	62	0	1	0	0	0	0	0	0	0	2063	1798	62	5		5	C1orf49	1	178489648	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1244515	178489648	70760973	79	75283											
ACBD6	84320	broad.mit.edu	37	chr1	180291717	180291717	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatggttcaatcttggTaggttgtatgtgtctacaaa	9	6	5	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180291717	C	C	180291717	1	2	62	0	1	0	0	0	0	0	0	0	126	1653	57	5		5	ACBD6	1	180291717	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1802069	180291717	68958904	80	75284											
FAM129A	116496	broad.mit.edu	37	chr1	184824719	184824719	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgttgcctgacctctcccCcttcaaccccagcactcctg	5	19	2	1	rs147601972	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184824719	G	G	184824719	1	3	62	0	1	0	0	0	0	0	0	0	5482	638	22	4		4	FAM129A	1	184824719	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4533002	184824719	64425902	81	75285											
HMCN1	83872	broad.mit.edu	37	chr1	185897592	185897592	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttacattgttcttttgaatGaaccttcaaaagaaatagtt	5	5	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185897592	A	A	185897592	1	1	62	0	1	0	0	0	0	0	0	0	7287	1305	45	4		4	HMCN1	1	185897592	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1072873	185897592	63353029	82	75286											
OCLM	10896	broad.mit.edu	37	chr1	186369986	186369986	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttacatgcaacaattggattGagagttttgggagggcagta	13	4	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186369986	A	A	186369986	1	1	62	0	1	0	0	0	0	0	0	0	10914	1305	45	4		4	OCLM	1	186369986	5'UTR	SNP	G	TCGA-17-Z032-01A-01W-0746-08	472394	186369986	62880635	83	75287											
PLA2G4A	5321	broad.mit.edu	37	chr1	186933391	186933391	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagctgtatggcattttatCcagttcaattcaaaccagtt	6	9	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186933391	T	T	186933391	1	4	62	0	1	0	0	0	0	0	0	0	12096	870	30	4		4	PLA2G4A	1	186933391	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	563405	186933391	62317230	84	75288											
DENND1B	163486	broad.mit.edu	37	chr1	197566946	197566946	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactatgctggccaataaggTagctatcagtcatatacaca	7	9	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197566946	C	C	197566946	1	2	62	0	1	0	0	0	0	0	0	0	4467	1653	57	5		5	DENND1B	1	197566946	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	10633555	197566946	51683675	85	75289											
TMEM9	252839	broad.mit.edu	37	chr1	201120816	201120816	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcatgcttatcctccaggGtccaagaactctagtaaaca	8	11	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201120816	A	A	201120816	1	1	62	0	1	0	0	0	0	0	0	0	16340	1276	44	4		4	TMEM9	1	201120816	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3553870	201120816	48129805	86	75290											
PPP1R12B	4660	broad.mit.edu	37	chr1	202541852	202541852	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccccttcctttcctaggTccttgcatgagagggaccca	8	15	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202541852	G	G	202541852	1	3	62	0	1	0	0	0	0	0	0	0	12456	1682	58	5		5	PPP1R12B	1	202541852	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1421036	202541852	46708769	87	75291											
PIK3C2B	5287	broad.mit.edu	37	chr1	204394943	204394943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaccattcctgtgatcaCactctgatccagactctcat	4	16	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204394943	A	A	204394943	1	1	62	0	1	0	0	0	0	0	0	0	12005	493	17	3		3	PIK3C2B	1	204394943	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1853091	204394943	44855678	88	75292											
MFSD4	148808	broad.mit.edu	37	chr1	205548732	205548732	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaacttgcccacagctaaTaagtgagcagcttcttcctc	7	13	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205548732	C	C	205548732	1	2	62	0	1	0	0	0	0	0	0	0	9626	1421	49	5		5	MFSD4	1	205548732	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1153789	205548732	43701889	89	75293											
PIGR	5284	broad.mit.edu	37	chr1	207110868	207110868	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcctgagttggttgatgAcaacgctgaacagtaactgg	13	7	0	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207110868	G	G	207110868	3	3	62	1	0	0	0	0	1	0	0	0	11992	275	10	5	1709	5	PIGR	1	207110868	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1562136	207110868	42139753	90	75294											
CD55	1604	broad.mit.edu	37	chr1	207510813	207510813	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgctatggtggaaataTgaacttgaccaagattgcag	11	5	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207510813	C	C	207510813	1	2	62	0	1	0	0	0	0	0	0	0	3054	1479	51	5		5	CD55	1	207510813	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	399945	207510813	41739808	91	75295											
LAMB3	3914	broad.mit.edu	37	chr1	209798711	209798711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacaggcagcactgggcaCttaaaagaacgctgggcttg	12	12	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209798711	A	A	209798711	1	1	62	0	1	0	0	0	0	0	0	0	8684	580	20	3		3	LAMB3	1	209798711	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2287898	209798711	39451910	92	75296											
KCNH1	3756	broad.mit.edu	37	chr1	211002080	211002080	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctttctaaaaatgtgttttGgggtgctactcctgtatgga	10	7	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211002080	C	C	211002080	1	2	62	0	1	0	0	0	0	0	0	0	8101	1363	47	4		4	KCNH1	1	211002080	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1203369	211002080	38248541	93	75297											
KCNH1	3756	broad.mit.edu	37	chr1	211183218	211183218	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcagcctcccaaagtgcTgggattacaggcatgagcca	11	13	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211183218	A	A	211183218	1	1	62	0	1	0	0	0	0	0	0	0	8101	1595	55	5		5	KCNH1	1	211183218	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	181138	211183218	38067403	94	75298											
BATF3	55509	broad.mit.edu	37	chr1	212861096	212861096	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaacacagtgggacccCatctctaaaaaaatttgttt	8	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212861096	T	T	212861096	1	4	62	0	1	0	0	0	0	0	0	0	1332	609	21	4		4	BATF3	1	212861096	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1677878	212861096	36389525	95	75299											
RPS6KC1	26750	broad.mit.edu	37	chr1	213314603	213314603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttgtccagggccttctGtttggtaggtttttaattac	9	7	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213314603	T	T	213314603	1	4	62	0	1	0	0	0	0	0	0	0	13769	1392	48	3		3	RPS6KC1	1	213314603	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	453507	213314603	35936018	96	75300											
CENPF	1063	broad.mit.edu	37	chr1	214826278	214826278	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtctagtaaagaagagctCaataattcattgaaagctac	7	6	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214826278	T	T	214826278	2	4	62	1	0	0	0	0	0	0	0	1	3261	813	29	4		4	CENPF	1	214826278	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1511675	214826278	34424343	97	75301											
USH2A	7399	broad.mit.edu	37	chr1	215925409	215925409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcattaaagaagaaatGtctctctctctctgtctctc	5	10	5	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215925409	T	T	215925409	1	4	62	0	1	0	0	0	0	0	0	0	17162	1392	48	3		3	USH2A	1	215925409	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1099131	215925409	33325212	98	75302											
USH2A	7399	broad.mit.edu	37	chr1	216400367	216400367	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggatcaaataagaccttcTcactggactcaagtggaaag	10	8	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216400367	A	A	216400367	1	1	62	0	1	0	0	0	0	0	0	0	17162	1566	54	5		5	USH2A	1	216400367	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	474958	216400367	32850254	99	75303											
USH2A	7399	broad.mit.edu	37	chr1	216556552	216556552	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcacaaacgaaagggtaTaagaaaaaaaaatccatcat	6	7	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216556552	C	C	216556552	1	2	62	0	1	0	0	0	0	0	0	0	17162	1421	49	5		5	USH2A	1	216556552	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	156185	216556552	32694069	100	75304											
IARS2	55699	broad.mit.edu	37	chr1	220317348	220317348	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgtgttttcatcttgcTtcttcatggtccatgatgcc	8	11	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220317348	C	C	220317348	1	2	62	0	1	0	0	0	0	0	0	0	7544	1624	56	5		5	IARS2	1	220317348	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3760796	220317348	28933273	101	75305											
HLX	3142	broad.mit.edu	37	chr1	221057861	221057861	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagtggtgggagcagcGgcggcggcggcaatagtttc	20	8	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221057861	A	A	221057861	3	1	62	1	0	0	0	0	1	0	0	0	7283	1116	39	4	1296	4	HLX	1	221057861	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	740513	221057861	28192760	102	75306											
SUSD4	55061	broad.mit.edu	37	chr1	223490122	223490122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaagttagtaggtcacaGggcaggatccaaatgcaggt	12	10	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223490122	T	T	223490122	1	4	62	0	1	0	0	0	0	0	0	0	15528	1015	35	2		2	SUSD4	1	223490122	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2432261	223490122	25760499	103	75307											
LBR	3930	broad.mit.edu	37	chr1	225613905	225613905	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagccaacaacatgatgtgcAcccccactttacacaagatc	5	14	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225613905	G	G	225613905	1	3	62	0	1	0	0	0	0	0	0	0	8724	174	6	5		5	LBR	1	225613905	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2123783	225613905	23636716	104	75308											
FMN2	56776	broad.mit.edu	37	chr1	240384084	240384084	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcaggtttgttacatagGtatacacgtgccatggtggt	12	7	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240384084	A	A	240384084	1	1	62	0	1	0	0	0	0	0	0	0	6008	1276	44	4		4	FMN2	1	240384084	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	14770179	240384084	8866537	105	75309											
KMO	8564	broad.mit.edu	37	chr1	241727322	241727322	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attggactgcactgtaaggtCaagagttatgcacgtactca	10	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241727322	G	G	241727322	1	3	62	0	1	0	0	0	0	0	0	0	8495	841	29	4		4	KMO	1	241727322	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1343238	241727322	7523299	106	75310											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242162047	242162048	+	Intron	INS	-	C	C													atcggaaccccacccccacgINSccccccagcggaagtccagt							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242162048	C	C	242162047	6	5	62	0	1	1	1	0	0	0	0	0	9325	1102	38	0		0	MAP1LC3C	1	242162047	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	434725	242162047	7088574	107	75311											
PLD5	200150	broad.mit.edu	37	chr1	242425755	242425755	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttattgcatgcatgataTtcctcaggcatcctcacacc	5	13	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242425755	C	C	242425755	1	2	62	0	1	0	0	0	0	0	0	0	12144	1508	52	5		5	PLD5	1	242425755	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	263708	242425755	6824866	108	75312											
C1orf101	257044	broad.mit.edu	37	chr1	244691458	244691458	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatatgttgttcccactcaCcccaccatgtgtccatgtgt	7	14	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244691458	T	T	244691458	1	4	62	0	1	0	0	0	0	0	0	0	1996	522	18	4		4	C1orf101	1	244691458	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2265703	244691458	4559163	109	75313											
C1orf101	257044	broad.mit.edu	37	chr1	244751740	244751740	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaatattttagatcatatGaatcagaactgctgaactca	6	6	3	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244751740	A	A	244751740	1	1	62	0	1	0	0	0	0	0	0	0	1996	1305	45	4		4	C1orf101	1	244751740	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	60282	244751740	4498881	110	75314											
SMYD3	64754	broad.mit.edu	37	chr1	246219640	246219640	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaaagaaaaaaacggaggGagtgcgggcagggggacatt	17	4	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246219640	T	T	246219640	1	4	62	0	1	0	0	0	0	0	0	0	14937	1189	41	3		3	SMYD3	1	246219640	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1467900	246219640	3030981	111	75315											
OR6F1	343169	broad.mit.edu	37	chr1	247875704	247875704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagacagcggtcataagcCatggctgccaggaggaagta	14	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875704	A	A	247875704	3	1	62	1	0	0	0	0	1	0	0	0	11295	594	21	2	576	2	OR6F1	1	247875704	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1656064	247875704	1374917	112	75316											
TRIM58	25893	broad.mit.edu	37	chr1	248039301	248039301	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accatggagggatgtccccaAcaaccctgagcgatttgaca	10	12	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248039301	T	T	248039301	3	4	62	1	0	0	0	0	1	0	0	0	16656	43	2	5	993	5	TRIM58	1	248039301	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	163597	248039301	1211320	113	75317											
OR2W3	343171	broad.mit.edu	37	chr1	248059181	248059181	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcagctacatgggctgtgCcatccagctcttcctgttcc	8	15	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248059181	G	G	248059181	3	3	62	1	0	0	0	0	1	0	0	0	11127	739	26	4	295	4	OR2W3	1	248059181	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	19880	248059181	1191440	114	75318											
OR2AK2	391191	broad.mit.edu	37	chr1	248129382	248129382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcaggaaaaggacaggCaaaagctgtttccacttgtt	11	8	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248129382	A	A	248129382	3	1	62	1	0	0	0	0	1	0	0	0	11080	710	25	3	751	3	OR2AK2	1	248129382	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	70201	248129382	1121239	115	75319											
OR2L13	284521	broad.mit.edu	37	chr1	248185449	248185449	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgcttagtcagctctcccTcattgacctaaattacatct	4	14	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248185449	A	A	248185449	1	1	62	0	1	0	0	0	0	0	0	0	11100	1566	54	5		5	OR2L13	1	248185449	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	56067	248185449	1065172	116	75320											
OR2L3	391192	broad.mit.edu	37	chr1	248224035	248224035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttattaggattcttcCcaccatcaagaattggcctt	5	11	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224035	A	A	248224035	3	1	62	1	0	0	0	0	1	0	0	0	11102	623	22	2	54	2	OR2L3	1	248224035	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	38586	248224035	1026586	117	75321											
SNTG2	54221	broad.mit.edu	37	chr2	1354334	1354334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccggatgctgtttctgCacatgtgctttgaaatataa	9	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1354334	A	A	1354334	1	1	62	0	1	0	0	0	0	0	0	0	14989	725	25	3		3	SNTG2	2	1354334	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		1354334	241845039	118	75322											
TPO	7173	broad.mit.edu	37	chr2	1380297	1380297	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacccgtggtgattacacgGggcattcgcgggagcaccag	14	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1380297	A	A	1380297	1	1	62	0	1	0	0	0	0	0	0	0	16534	1247	43	4		4	TPO	2	1380297	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	25963	1380297	241819076	119	75323											
MYT1L	23040	broad.mit.edu	37	chr2	2128321	2128321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtaatgcacctgcctcgGcctcccaaagtgctgggatt	11	13	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2128321	A	A	2128321	1	1	62	0	1	0	0	0	0	0	0	0	10201	1218	42	4		4	MYT1L	2	2128321	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	748024	2128321	241071052	120	75324											
SOX11	6664	broad.mit.edu	37	chr2	5836624	5836625	+	3'UTR	DNP	CG	TT	TT													cctctgtgcgatccgagtcgCggtctccggggtgcctggga							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	5836625	TT	TT	5836624	1	4	62	0	1	0	0	0	0	0	0	0	15056	783	27	4		4	SOX11	2	5836624	3'UTR	DNP	CG	TCGA-17-Z032-01A-01W-0746-08	3708303	5836624	237362749	121	75325											
ADAM17	6868	broad.mit.edu	37	chr2	9683351	9683351	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtagatctctttttcttaccGaatgctgctggatattagat	8	7	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9683351	A	A	9683351	3	1	62	1	0	0	0	0	1	0	0	0	238	1059	37	4	2385	4	ADAM17	2	9683351	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3846727	9683351	233516022	122	75326											
ROCK2	9475	broad.mit.edu	37	chr2	11375869	11375869	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccaaaatctgctaattttaGatgtccatgtttatccaaga	6	8	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11375869	A	A	11375869	2	1	62	1	0	0	0	0	0	0	0	1	13629	933	33	4		4	ROCK2	2	11375869	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1692518	11375869	231823504	123	75327											
ROCK2	9475	broad.mit.edu	37	chr2	11458425	11458425	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgactttttaatgataGccattctaactggtgtgaga	8	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11458425	A	A	11458425	1	1	62	0	1	0	0	0	0	0	0	0	13629	986	34	4		4	ROCK2	2	11458425	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	82556	11458425	231740948	124	75328											
NBAS	51594	broad.mit.edu	37	chr2	15550089	15550089	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcacaggtcacagaggcgTattaattgaaagcacaaatt	8	7	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15550089	G	G	15550089	1	3	62	0	1	0	0	0	0	0	0	0	10280	1653	57	5		5	NBAS	2	15550089	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4091664	15550089	227649284	125	75329											
TTC27	55622	broad.mit.edu	37	chr2	33036964	33036964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggcacagctaatctgtgGgattcttagccattctctcc	8	13	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33036964	T	T	33036964	1	4	62	0	1	0	0	0	0	0	0	0	16821	1247	43	2		2	TTC27	2	33036964	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	17486875	33036964	210162409	126	75330											
CRIM1	51232	broad.mit.edu	37	chr2	36623951	36623951	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagcattaatttttgttaAccatccagtcgtaagcctta	6	8	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36623951	G	G	36623951	1	3	62	0	1	0	0	0	0	0	0	0	3905	58	2	5		5	CRIM1	2	36623951	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	3586987	36623951	206575422	127	75331											
VIT	5212	broad.mit.edu	37	chr2	37005830	37005830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagtccttgtgtgatgcGctaccagcatggcgacaccc	12	12	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37005830	T	T	37005830	1	4	62	0	1	0	0	0	0	0	0	0	17298	1102	38	3		3	VIT	2	37005830	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	381879	37005830	206193543	128	75332											
C2orf34	79823	broad.mit.edu	37	chr2	44953755	44953755	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgatatacagaagctctttCgtgtaatcaggtcacacgtg	9	8	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44953755	A	A	44953755	1	1	62	0	1	0	0	0	0	0	0	0	2185	899	31	3		3	C2orf34	2	44953755	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	7947925	44953755	198245618	129	75333											
SRBD1	55133	broad.mit.edu	37	chr2	45691492	45691492	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtatgcaagatagctctctCctatcctattaggtttcaag	8	9	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45691492	A	A	45691492	1	1	62	0	1	0	0	0	0	0	0	0	15251	870	30	3		3	SRBD1	2	45691492	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	737737	45691492	197507881	130	75334											
FSHR	2492	broad.mit.edu	37	chr2	49350209	49350209	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacattttggtttgagatgaGaaacatccaaggcataaaga	9	6	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49350209	T	T	49350209	1	4	62	0	1	0	0	0	0	0	0	0	6133	957	33	3		3	FSHR	2	49350209	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3658717	49350209	193849164	131	75335											
NRXN1	9378	broad.mit.edu	37	chr2	51128406	51128406	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgaggctgggcacggtgGctcacacctgtaatcccagc	13	12	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51128406	A	A	51128406	1	1	62	0	1	0	0	0	0	0	0	0	10760	1218	42	4		4	NRXN1	2	51128406	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1778197	51128406	192070967	132	75336											
NRXN1	9378	broad.mit.edu	37	chr2	51129343	51129343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaatattctttaaccagGgcaagacaaagaaaatgcat	7	6	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51129343	T	T	51129343	1	4	62	0	1	0	0	0	0	0	0	0	10760	1247	43	2		2	NRXN1	2	51129343	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	937	51129343	192070030	133	75337											
VRK2	7444	broad.mit.edu	37	chr2	58161528	58161528	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggaaagtatttttttccaAcatgttgaatgtattattcc	7	5	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58161528	G	G	58161528	1	3	62	0	1	0	0	0	0	0	0	0	17347	58	2	5		5	VRK2	2	58161528	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	7032185	58161528	185037845	134	75338											
FANCL	55120	broad.mit.edu	37	chr2	58387257	58387257	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttaccttactacaatatgGacattcaccaaatatgatgt	5	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58387257	C	C	58387257	3	2	62	1	0	0	0	0	1	0	0	0	5727	1174	41	4	57	4	FANCL	2	58387257	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	225729	58387257	184812116	135	75339											
KIAA1841	84542	broad.mit.edu	37	chr2	61361278	61361278	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttttttacagacagacAaactgagacccagagacggc	9	11	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61361278	G	G	61361278	3	3	62	1	0	0	0	0	1	0	0	0	8331	131	5	5	2246	5	KIAA1841	2	61361278	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2974021	61361278	181838095	136	75340											
AHSA2	130872	broad.mit.edu	37	chr2	61407604	61407604	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaccgagccctaaggcctGaggaaccttgtgggccttgt	13	12	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61407604	C	C	61407604	1	2	62	0	1	0	0	0	0	0	0	0	419	1305	45	4		4	AHSA2	2	61407604	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	46326	61407604	181791769	137	75341											
C2orf86	51057	broad.mit.edu	37	chr2	63696521	63696521	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatagttctatcataaagaCacatgcatgcatatattcat	4	7	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63696521	A	A	63696521	1	1	62	0	1	0	0	0	0	0	0	0	2223	493	17	3		3	C2orf86	2	63696521	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2288917	63696521	179502852	138	75342											
MEIS1	4211	broad.mit.edu	37	chr2	66709152	66709152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaccaccacacaccacaCccagctaatttttgtgtttt	4	15	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66709152	A	A	66709152	1	1	62	0	1	0	0	0	0	0	0	0	9560	522	18	3		3	MEIS1	2	66709152	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3012631	66709152	176490221	139	75343											
APLF	200558	broad.mit.edu	37	chr2	68753795	68753795	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaccagaacctcttgttcctCctgtcccaaaagaccatcct	4	16	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68753795	G	G	68753795	1	3	62	0	1	0	0	0	0	0	0	0	778	870	30	4		4	APLF	2	68753795	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2044643	68753795	174445578	140	75344											
ALMS1	7840	broad.mit.edu	37	chr2	73646508	73646508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagttttgcggggactgCaagtcttgtaactttcccct	10	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73646508	A	A	73646508	1	1	62	0	1	0	0	0	0	0	0	0	535	725	25	3		3	ALMS1	2	73646508	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4892713	73646508	169552865	141	75345											
HK2	3099	broad.mit.edu	37	chr2	75110618	75110618	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcaagtgacagaaagagcTgggccagcgcagaagagcct	15	9	0	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75110618	C	C	75110618	1	2	62	0	1	0	0	0	0	0	0	0	7258	1595	55	5		5	HK2	2	75110618	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1464110	75110618	168088755	142	75346											
TACR1	6869	broad.mit.edu	37	chr2	75313643	75313643	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactgactgactgaatgaatGaaccaggttggggagtctca	13	7	1	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75313643	C	C	75313643	1	2	62	0	1	0	0	0	0	0	0	0	15624	1305	45	4		4	TACR1	2	75313643	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	203025	75313643	167885730	143	75347											
LRRTM4	80059	broad.mit.edu	37	chr2	77397513	77397513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagatctaaatcctacaaCcataaggaactagattctgc	6	10	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77397513	A	A	77397513	1	1	62	0	1	0	0	0	0	0	0	0	9129	522	18	3		3	LRRTM4	2	77397513	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2083870	77397513	165801860	144	75348											
LRRTM4	80059	broad.mit.edu	37	chr2	77748748	77748748	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgactgaggataggaagccAagaggatcagctttgctcag	13	8	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77748748	G	G	77748748	1	3	62	0	1	0	0	0	0	0	0	0	9129	145	5	5		5	LRRTM4	2	77748748	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	351235	77748748	165450625	145	75349											
CTNNA2	1496	broad.mit.edu	37	chr2	80225334	80225334	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagccaagatgaatagtagCaataaattgtggattcattt	8	5	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80225334	T	T	80225334	1	4	62	0	1	0	0	0	0	0	0	0	4047	725	25	4		4	CTNNA2	2	80225334	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2476586	80225334	162974039	146	75350											
CTNNA2	1496	broad.mit.edu	37	chr2	80400879	80400879	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcctagggtgcatggcGtctgcatcaggaggtctgca	16	9	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80400879	A	A	80400879	1	1	62	0	1	0	0	0	0	0	0	0	4047	1160	40	4		4	CTNNA2	2	80400879	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	175545	80400879	162798494	147	75351											
CTNNA2	1496	broad.mit.edu	37	chr2	80602461	80602461	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggaagagagggggaaggGaggtatacagtttggttctt	18	2	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80602461	T	T	80602461	1	4	62	0	1	0	0	0	0	0	0	0	4047	1189	41	3		3	CTNNA2	2	80602461	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	201582	80602461	162596912	148	75352											
DNAH6	1768	broad.mit.edu	37	chr2	84931175	84931175	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaggccacttaagcagtcAtgtttcaatggttaggtccg	11	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84931175	T	T	84931175	1	4	62	0	1	0	0	0	0	0	0	0	4645	232	8	5		5	DNAH6	2	84931175	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4328714	84931175	158268198	149	75353											
TMSB10	9168	broad.mit.edu	37	chr2	85133174	85133174	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagacatgggggaaatcgcCagcttcgataaggccaagct	12	11	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85133174	G	G	85133174	2	3	62	1	0	0	0	0	0	0	0	1	16377	581	21	4		4	TMSB10	2	85133174	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	201999	85133174	158066199	150	75354											
RMND5A	64795	broad.mit.edu	37	chr2	87566280	87566280	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagcgtctctgctctattTggacattttgcagttctaaa	7	8	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87566280	C	C	87566280	1	2	62	0	1	0	0	0	0	0	0	0	13508	1827	63	5		5	RMND5A	2	87566280	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2433106	87566280	155633093	151	75355											
TSGA10	80705	broad.mit.edu	37	chr2	99622284	99622284	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatatggaaccaaaaaagaGcccgcattgccaaggcaatc	8	11	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99622284	C	C	99622284	1	2	62	0	1	0	0	0	0	0	0	0	16742	986	34	4		4	TSGA10	2	99622284	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	12056004	99622284	143577089	152	75356											
AFF3	3899	broad.mit.edu	37	chr2	100652479	100652479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagatttctcctctgtccCttgaatcctttaatctacct	3	15	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100652479	A	A	100652479	1	1	62	0	1	0	0	0	0	0	0	0	358	696	24	2		2	AFF3	2	100652479	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1030195	100652479	142546894	153	75357											
MAP4K4	9448	broad.mit.edu	37	chr2	102493427	102493427	+	Intron	DEL	C	-	-													acctggggatttgccaagcaCagcataaaattgaggccttt							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102493427	-	-	102493427	6	5	62	0	1	1	0	1	0	0	0	0	9354	493	17	0		0	MAP4K4	2	102493427	Intron	DEL	C	TCGA-17-Z032-01A-01W-0746-08	1840948	102493427	140705946	154	75358											
NCK2	8440	broad.mit.edu	37	chr2	106464572	106464572	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatgactgggcattacgtgGacattagcagagcaataatg	12	6	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106464572	T	T	106464572	1	4	62	0	1	0	0	0	0	0	0	0	10315	1189	41	3		3	NCK2	2	106464572	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3971145	106464572	136734801	155	75359											
SULT1C2	6819	broad.mit.edu	37	chr2	108914244	108914244	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtcaagccccgactcCacagtatctctctcctgtag	6	14	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108914244	T	T	108914244	1	4	62	0	1	0	0	0	0	0	0	0	15495	609	21	4		4	SULT1C2	2	108914244	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2449672	108914244	134285129	156	75360											
LIMS1	3987	broad.mit.edu	37	chr2	109224164	109224164	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcccttaacttttctcgtcTtcctttgagtgggctcctag	7	12	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109224164	C	C	109224164	1	2	62	0	1	0	0	0	0	0	0	0	8875	1624	56	5		5	LIMS1	2	109224164	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	309920	109224164	133975209	157	75361											
ACOXL	55289	broad.mit.edu	37	chr2	111847850	111847850	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattccatatagagaagtgGctccagacacaatgactctt	7	9	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111847850	A	A	111847850	1	1	62	0	1	0	0	0	0	0	0	0	161	1218	42	4		4	ACOXL	2	111847850	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2623686	111847850	131351523	158	75362											
DPP10	57628	broad.mit.edu	37	chr2	115649123	115649123	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagacttgcagaagtattgtCttcaaagatgtggaatgagc	11	6	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115649123	T	T	115649123	1	4	62	0	1	0	0	0	0	0	0	0	4767	928	32	4		4	DPP10	2	115649123	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3801273	115649123	127550250	159	75363											
DPP10	57628	broad.mit.edu	37	chr2	116534940	116534940	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatgccatcttttctaatAgaattatgttttgcttacca	4	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116534940	T	T	116534940	1	4	62	0	1	0	0	0	0	0	0	0	4767	435	15	5		5	DPP10	2	116534940	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	885817	116534940	126664433	160	75364											
DPP10	57628	broad.mit.edu	37	chr2	116598276	116598276	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaataatatgaaaaagttCtcatacaagcagtgtgtttc	6	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116598276	T	T	116598276	1	4	62	0	1	0	0	0	0	0	0	0	4767	928	32	4		4	DPP10	2	116598276	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	63336	116598276	126601097	161	75365											
CCDC93	54520	broad.mit.edu	37	chr2	118705599	118705599	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttttaaactgcactggatagGatgccacaacaggacaacgg	10	9	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118705599	C	C	118705599	1	2	62	0	1	0	0	0	0	0	0	0	2900	1189	41	4		4	CCDC93	2	118705599	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2107323	118705599	124493774	162	75366											
GLI2	2736	broad.mit.edu	37	chr2	121746948	121746948	+	Frame_Shift_Del	DEL	C	-	-													gaatgaggtgagctccggcaCcgtagacgccctggccagcc							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121746948	-	-	121746948	7	5	62	1	0	1	0	1	0	0	0	0	6502	507	18	0	3508	0	GLI2	2	121746948	Frame_Shift_Del	DEL	C	TCGA-17-Z032-01A-01W-0746-08	3041349	121746948	121452425	163	75367											
CLASP1	23332	broad.mit.edu	37	chr2	122208675	122208675	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacatggagctgggagcctCtgtgccaaggctggtcagtt	14	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122208675	A	A	122208675	1	1	62	0	1	0	0	0	0	0	0	0	3485	928	32	3		3	CLASP1	2	122208675	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	461727	122208675	120990698	164	75368											
CLASP1	23332	broad.mit.edu	37	chr2	122211728	122211728	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaattttatctccctgcccAcccccccctccaaaattaat	2	18	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122211728	C	C	122211728	1	2	62	0	1	0	0	0	0	0	0	0	3485	174	6	5		5	CLASP1	2	122211728	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	3053	122211728	120987645	165	75369											
CNTNAP5	129684	broad.mit.edu	37	chr2	125294297	125294297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggccagggagggggctaCagaggaagcagcacttcctg	18	10	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125294297	A	A	125294297	1	1	62	0	1	0	0	0	0	0	0	0	3682	493	17	3		3	CNTNAP5	2	125294297	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3082569	125294297	117905076	166	75370											
CNTNAP5	129684	broad.mit.edu	37	chr2	125300142	125300142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctcttgtctggagctccCttcccagtttcttttgccca	6	14	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125300142	A	A	125300142	1	1	62	0	1	0	0	0	0	0	0	0	3682	696	24	2		2	CNTNAP5	2	125300142	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5845	125300142	117899231	167	75371											
CNTNAP5	129684	broad.mit.edu	37	chr2	125624314	125624314	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatagacagagtccagatCatcccctttaaaatcatgac	6	10	2	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125624314	A	A	125624314	1	1	62	0	1	0	0	0	0	0	0	0	3682	841	29	3		3	CNTNAP5	2	125624314	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	324172	125624314	117575059	168	75372											
POTEF	728378	broad.mit.edu	37	chr2	130832621	130832621	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccttagggttcagggtGgcctcggtcagcaggacggg	18	9	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832621	T	T	130832621	2	4	62	1	0	0	0	0	0	0	0	1	12361	1335	47	2		2	POTEF	2	130832621	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5208307	130832621	112366752	169	75373											
PLEKHB2	55041	broad.mit.edu	37	chr2	132093204	132093204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcacatcgatgaagttGtttattcgtgccctgtggag	12	7	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132093204	T	T	132093204	1	4	62	0	1	0	0	0	0	0	0	0	12160	1392	48	3		3	PLEKHB2	2	132093204	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1260583	132093204	111106169	170	75374											
NCKAP5	344148	broad.mit.edu	37	chr2	133664353	133664353	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttattacagttgaggttgaaGaaagatcagaggagcactga	12	4	1	6			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133664353	C	C	133664353	1	2	62	0	1	0	0	0	0	0	0	0	10318	957	33	4		4	NCKAP5	2	133664353	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1571149	133664353	109535020	171	75375											
NCKAP5	344148	broad.mit.edu	37	chr2	134049056	134049056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaacccagggtccaggtgAcagatctcccctattggtaa	10	12	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134049056	G	G	134049056	1	3	62	0	1	0	0	0	0	0	0	0	10318	290	10	5		5	NCKAP5	2	134049056	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	384703	134049056	109150317	172	75376											
THSD7B	80731	broad.mit.edu	37	chr2	138357495	138357495	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgctctaccaaggcctcctCcttgtaagattcagaaatcc	6	13	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138357495	A	A	138357495	1	1	62	0	1	0	0	0	0	0	0	0	16003	870	30	3		3	THSD7B	2	138357495	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4308439	138357495	104841878	173	75377											
LRP1B	53353	broad.mit.edu	37	chr2	142574324	142574324	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaatactcacatgtatataGagatatacacaaatccatca	3	9	3	1	rs114160597	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142574324	C	C	142574324	1	2	62	0	1	0	0	0	0	0	0	0	9042	957	33	4		4	LRP1B	2	142574324	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4216829	142574324	100625049	174	75378											
LRP1B	53353	broad.mit.edu	37	chr2	142818599	142818599	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatttaggtgaatgaaagcAgggctactatcaaaggggag	15	4	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142818599	T	T	142818599	1	4	62	0	1	0	0	0	0	0	0	0	9042	203	7	5		5	LRP1B	2	142818599	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	244275	142818599	100380774	175	75379											
GPD2	2820	broad.mit.edu	37	chr2	157448565	157448565	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttctttagagtcaccatatCctgctgggcgactctaatct	8	11	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157448565	A	A	157448565	1	1	62	0	1	0	0	0	0	0	0	0	6671	870	30	3		3	GPD2	2	157448565	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	14629966	157448565	85750808	176	75380											
CCDC148	130940	broad.mit.edu	37	chr2	159103165	159103165	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgggacctgtgctcacgGgagctggaatcaagctactt	12	10	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159103165	A	A	159103165	1	1	62	0	1	0	0	0	0	0	0	0	2808	1247	43	4		4	CCDC148	2	159103165	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1654600	159103165	84096208	177	75381											
RBMS1	5937	broad.mit.edu	37	chr2	161172395	161172395	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taacttaggtacatgttattCtaatgtttccttcagcttaa	5	7	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161172395	A	A	161172395	1	1	62	0	1	0	0	0	0	0	0	0	13256	928	32	3		3	RBMS1	2	161172395	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2069230	161172395	82026978	178	75382											
IFIH1	64135	broad.mit.edu	37	chr2	163174589	163174589	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagggcctccacgaattcccGagtccaaccaaggtgccaga	11	14	0	1	rs147278787	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163174589	C	C	163174589	3	2	62	1	0	0	0	0	1	0	0	0	7590	1057	37	4	2912	4	IFIH1	2	163174589	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2002194	163174589	80024784	179	75383											
SCN3A	6328	broad.mit.edu	37	chr2	166061776	166061776	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatctaagttcaggattgtgTacatatatagagaaagcaga	10	4	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166061776	A	A	166061776	1	1	62	0	1	0	0	0	0	0	0	0	14031	1653	57	5		5	SCN3A	2	166061776	5'Flank	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2887187	166061776	77137597	180	75384											
MYO3B	140469	broad.mit.edu	37	chr2	171374428	171374428	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgaaattctaacaggtGgtggctatttttctttattt	7	4	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171374428	C	C	171374428	1	2	62	0	1	0	0	0	0	0	0	0	10171	1363	47	4		4	MYO3B	2	171374428	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5312652	171374428	71824945	181	75385											
MYO3B	140469	broad.mit.edu	37	chr2	171453214	171453214	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaaacctcccgctgccccCccagggcctagagaaggccc	10	18	0	2	rs116143516	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171453214	T	T	171453214	1	4	62	0	1	0	0	0	0	0	0	0	10171	638	22	4		4	MYO3B	2	171453214	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	78786	171453214	71746159	182	75386											
MYO3B	140469	broad.mit.edu	37	chr2	171476129	171476129	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggactctttacaggactgCgttaccatgtggcagctgtc	12	10	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171476129	T	T	171476129	1	4	62	0	1	0	0	0	0	0	0	0	10171	783	27	4		4	MYO3B	2	171476129	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	22915	171476129	71723244	183	75387											
ATF2	1386	broad.mit.edu	37	chr2	175941174	175941174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcagatggtacatatgcaGgtatgttacatgggtatatt	10	4	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175941174	T	T	175941174	1	4	62	0	1	0	0	0	0	0	0	0	1084	1015	35	2		2	ATF2	2	175941174	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4465045	175941174	67258199	184	75388											
PDE11A	50940	broad.mit.edu	37	chr2	178577212	178577212	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattcatacagataataaggCagtgcatgtcatggacacca	8	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178577212	G	G	178577212	1	3	62	0	1	0	0	0	0	0	0	0	11725	725	25	4		4	PDE11A	2	178577212	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2636038	178577212	64622161	185	75389											
PDE11A	50940	broad.mit.edu	37	chr2	178859750	178859750	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaacagtcaattcagtaTcaaacttgagagagtaaagt	10	5	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178859750	C	C	178859750	1	2	62	0	1	0	0	0	0	0	0	0	11725	1450	50	5		5	PDE11A	2	178859750	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	282538	178859750	64339623	186	75390											
CERKL	375298	broad.mit.edu	37	chr2	182528452	182528452	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaaagatcagatagttgTagatatgcggcgttatttct	10	5	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182528452	C	C	182528452	1	2	62	0	1	0	0	0	0	0	0	0	3298	1653	57	5		5	CERKL	2	182528452	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3668702	182528452	60670921	187	75391											
CDK15	65061	broad.mit.edu	37	chr2	202695237	202695237	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggatgaattttgtatttcaGaggacaaacagttccataca	9	6	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202695237	A	A	202695237	1	1	62	0	1	0	0	0	0	0	0	0	3161	957	33	4		4	CDK15	2	202695237	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	20166785	202695237	40504136	188	75392											
CD28	940	broad.mit.edu	37	chr2	204602250	204602250	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgaatcacacttgagatgTttcttactcactctgcacag	7	10	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204602250	C	C	204602250	1	2	62	0	1	0	0	0	0	0	0	0	3023	1740	60	5		5	CD28	2	204602250	3'UTR	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1907013	204602250	38597123	189	75393											
PARD3B	117583	broad.mit.edu	37	chr2	206467323	206467323	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttcctgattcagtcttggGagggttatgtgtccaggaat	12	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206467323	T	T	206467323	1	4	62	0	1	0	0	0	0	0	0	0	11538	1189	41	3		3	PARD3B	2	206467323	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1865073	206467323	36732050	190	75394											
MAP2	4133	broad.mit.edu	37	chr2	210356700	210356700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctgataacaaaacctGgcagagacacaactaaacaa	5	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210356700	T	T	210356700	1	4	62	0	1	0	0	0	0	0	0	0	9327	1363	47	2		2	MAP2	2	210356700	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3889377	210356700	32842673	191	75395											
ERBB4	2066	broad.mit.edu	37	chr2	212972179	212972179	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatgcctgtatccccattgTatctaggaagtaactaactt	6	10	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212972179	A	A	212972179	1	1	62	0	1	0	0	0	0	0	0	0	5251	1653	57	5		5	ERBB4	2	212972179	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2615479	212972179	30227194	192	75396											
ATIC	471	broad.mit.edu	37	chr2	216191769	216191769	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtttctctgtattgcatCtgatgtggttcacattcaga	9	7	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216191769	T	T	216191769	1	4	62	0	1	0	0	0	0	0	0	0	1109	928	32	4		4	ATIC	2	216191769	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3219590	216191769	27007604	193	75397											
XRCC5	7520	broad.mit.edu	37	chr2	217052548	217052548	+	Intron	SNP	T	A	A													acacacacacacacacactcTctctctctctctctctctct							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217052548	A	A	217052548	1	1	62	0	1	0	0	0	0	0	0	0	17583	1566	54	5		5	XRCC5	2	217052548	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	860779	217052548	26146825	194	75398	340	2									
XRCC5	7520	broad.mit.edu	37	chr2	217052550	217052550	+	Intron	SNP	T	A	A													acacacacacacacactctcTctctctctctctctctctct							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217052550	A	A	217052550	1	1	62	0	1	0	0	0	0	0	0	0	17583	1566	54	5		5	XRCC5	2	217052550	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2	217052550	26146823	195	75399	340	2									
TTLL4	9654	broad.mit.edu	37	chr2	219600550	219600550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattacaggcaccctcctcCgtgcatggctaatttttgta	9	11	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219600550	A	A	219600550	1	1	62	0	1	0	0	0	0	0	0	0	16855	667	23	1		1	TTLL4	2	219600550	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2548000	219600550	23598823	196	75400											
SGPP2	130367	broad.mit.edu	37	chr2	223369154	223369154	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattgctgacaatttcgaagGagttgtcatcttcacagttc	8	9	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223369154	T	T	223369154	1	4	62	0	1	0	0	0	0	0	0	0	14333	1189	41	3		3	SGPP2	2	223369154	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3768604	223369154	19830219	197	75401											
COL4A4	1286	broad.mit.edu	37	chr2	227924919	227924919	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatgcccatctgaaccactCagcccaggggcaccttgggg	11	14	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227924919	T	T	227924919	2	4	62	1	0	0	0	0	0	0	0	1	3725	813	29	4		4	COL4A4	2	227924919	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4555765	227924919	15274454	198	75402											
PID1	55022	broad.mit.edu	37	chr2	230047217	230047217	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaggtcacttgtccacagCtccattttaagcatctaact	6	11	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230047217	T	T	230047217	1	4	62	0	1	0	0	0	0	0	0	0	11977	812	28	4		4	PID1	2	230047217	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2122298	230047217	13152156	199	75403											
SP110	3431	broad.mit.edu	37	chr2	231067109	231067109	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgaacacgtctgtttctTccacaaaacttttcagatgc	6	11	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231067109	C	C	231067109	1	2	62	0	1	0	0	0	0	0	0	0	15075	1798	62	5		5	SP110	2	231067109	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1019892	231067109	12132264	200	75404											
ITM2C	81618	broad.mit.edu	37	chr2	231740344	231740344	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccttgctcagctggcccgaGataacttcttccgctgtggt	11	13	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231740344	C	C	231740344	3	2	62	1	0	0	0	0	1	0	0	0	7984	942	33	4	281	4	ITM2C	2	231740344	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	673235	231740344	11459029	201	75405											
DIS3L2	129563	broad.mit.edu	37	chr2	233077784	233077784	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtataaacaagctaaatagAtgcagtccgtggaactatat	8	6	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233077784	G	G	233077784	1	3	62	0	1	0	0	0	0	0	0	0	4577	348	12	5		5	DIS3L2	2	233077784	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1337440	233077784	10121589	202	75406											
GIGYF2	26058	broad.mit.edu	37	chr2	233658629	233658629	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatttggcaactttgtgtcActgcttatctttgagagagg	11	6	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233658629	G	G	233658629	1	3	62	0	1	0	0	0	0	0	0	0	6442	174	6	5		5	GIGYF2	2	233658629	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	580845	233658629	9540744	203	75407											
GIGYF2	26058	broad.mit.edu	37	chr2	233695412	233695412	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcagaatatcgtattagCtgggcacagtggctaacact	9	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233695412	T	T	233695412	1	4	62	0	1	0	0	0	0	0	0	0	6442	812	28	4		4	GIGYF2	2	233695412	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	36783	233695412	9503961	204	75408											
IQCA1	79781	broad.mit.edu	37	chr2	237249380	237249380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgccctttctgaggcaGgagatgacactgttaccttt	9	12	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237249380	T	T	237249380	1	4	62	0	1	0	0	0	0	0	0	0	7872	1015	35	2		2	IQCA1	2	237249380	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3553968	237249380	5949993	205	75409											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239234519	239234519	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatggtgtcgggagagccaCtgttggccaaaccagcccga	13	11	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239234519	T	T	239234519	2	4	62	1	0	0	0	0	0	0	0	1	16564	564	20	4		4	TRAF3IP1	2	239234519	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1985139	239234519	3964854	206	75410											
SUMF1	285362	broad.mit.edu	37	chr3	4246807	4246807	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaagtgaaaatagccttaActgatgacattccaccattg	7	9	0	4	rs143729014	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4246807	G	G	4246807	1	3	62	0	1	0	0	0	0	0	0	0	15503	58	2	5		5	SUMF1	3	4246807	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08		4246807	193775623	207	75411											
C3orf32	51066	broad.mit.edu	37	chr3	8669568	8669568	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccagcctggtgaccttccTccccctgggccttagcccct	8	20	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8669568	C	C	8669568	1	2	62	0	1	0	0	0	0	0	0	0	2244	1566	54	5		5	C3orf32	3	8669568	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4422761	8669568	189352862	208	75412											
CRELD1	78987	broad.mit.edu	37	chr3	9979890	9979890	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgtgaactcaggctactCagataaacttctctggacct	8	11	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9979890	A	A	9979890	1	1	62	0	1	0	0	0	0	0	0	0	3898	841	29	3		3	CRELD1	3	9979890	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1310322	9979890	188042540	209	75413											
EAF1	85403	broad.mit.edu	37	chr3	15473879	15473879	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacaaaatatgtaaatatGtgctcagagtaaaatatgtc	7	5	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15473879	A	A	15473879	1	1	62	0	1	0	0	0	0	0	0	0	4915	1392	48	4		4	EAF1	3	15473879	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5493989	15473879	182548551	210	75414											
KCNH8	131096	broad.mit.edu	37	chr3	19329954	19329954	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgttcaattcccacctaTgagtgagaacatatggtgtt	8	8	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19329954	C	C	19329954	1	2	62	0	1	0	0	0	0	0	0	0	8108	1479	51	5		5	KCNH8	3	19329954	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3856075	19329954	178692476	211	75415											
KCNH8	131096	broad.mit.edu	37	chr3	19339730	19339730	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taacatcttgtctcataggaGaaaggtgttatgatcaatta	8	5	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19339730	T	T	19339730	1	4	62	0	1	0	0	0	0	0	0	0	8108	957	33	3		3	KCNH8	3	19339730	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	9776	19339730	178682700	212	75416											
KCNH8	131096	broad.mit.edu	37	chr3	19415948	19415948	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctttttttgttttccattTgcttggtagatcttcctcca	6	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19415948	G	G	19415948	1	3	62	0	1	0	0	0	0	0	0	0	8108	1827	63	5		5	KCNH8	3	19415948	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	76218	19415948	178606482	213	75417											
KCNH8	131096	broad.mit.edu	37	chr3	19415971	19415971	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtagatcttcctccatcAttttattttgagcctagtct	6	9	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19415971	C	C	19415971	1	2	62	0	1	0	0	0	0	0	0	0	8108	232	8	5		5	KCNH8	3	19415971	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	23	19415971	178606459	214	75418											
KCNH8	131096	broad.mit.edu	37	chr3	19574962	19574962	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagcttctggaaaacgttCtgtcacctcagcagccatca	7	14	5	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19574962	T	T	19574962	2	4	62	1	0	0	0	0	0	0	0	1	8108	912	32	4		4	KCNH8	3	19574962	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	158991	19574962	178447468	215	75419											
EFHB	151651	broad.mit.edu	37	chr3	19926243	19926243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgacccctccactgacCcaacacccaactgtggaaga	8	16	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19926243	A	A	19926243	1	1	62	0	1	0	0	0	0	0	0	0	4985	638	22	2		2	EFHB	3	19926243	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	351281	19926243	178096187	216	75420											
GOLGA4	2803	broad.mit.edu	37	chr3	37341680	37341680	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctttggtagtttggagtTggagcagcagctaaagctac	12	7	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37341680	C	C	37341680	1	2	62	0	1	0	0	0	0	0	0	0	6619	1827	63	5		5	GOLGA4	3	37341680	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	17415437	37341680	160680750	217	75421											
GOLGA4	2803	broad.mit.edu	37	chr3	37365369	37365369	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagacaaagagattatcttCcaggcccacatagaagaaat	7	8	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37365369	T	T	37365369	2	4	62	1	0	0	0	0	0	0	0	1	6619	854	30	4		4	GOLGA4	3	37365369	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	23689	37365369	160657061	218	75422											
MYRIP	25924	broad.mit.edu	37	chr3	40033690	40033690	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctatcccctacagtgccTccaggacccatttatcaagc	6	16	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40033690	C	C	40033690	1	2	62	0	1	0	0	0	0	0	0	0	10194	1566	54	5		5	MYRIP	3	40033690	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2668321	40033690	157988740	219	75423											
CTNNB1	1499	broad.mit.edu	37	chr3	41266113	41266113	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggactctggaatccattCtggtgccactaccacagctc	8	15	2	0	rs121913403		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41266113	T	T	41266113	3	4	62	1	0	0	0	0	1	0	0	0	4050	913	32	4	116	4	CTNNB1	3	41266113	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1232423	41266113	156756317	220	75424											
ULK4	54986	broad.mit.edu	37	chr3	41319450	41319450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcacatgggtgcagccCatggagagtgcgccgaagca	16	10	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41319450	A	A	41319450	1	1	62	0	1	0	0	0	0	0	0	0	17104	609	21	2		2	ULK4	3	41319450	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	53337	41319450	156702980	221	75425											
HIGD1A	25994	broad.mit.edu	37	chr3	42841673	42841673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaaaaatacaaaaattaGctgggcatagtggtgtgcat	9	5	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42841673	T	T	42841673	1	4	62	0	1	0	0	0	0	0	0	0	7173	986	34	3		3	HIGD1A	3	42841673	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1522223	42841673	155180757	222	75426											
CCR3	1232	broad.mit.edu	37	chr3	46218633	46218633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgggcttccccttgtggGtaaccagacctttctctctg	10	12	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46218633	T	T	46218633	1	4	62	0	1	0	0	0	0	0	0	0	2972	1276	44	3		3	CCR3	3	46218633	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3376960	46218633	151803797	223	75427											
SPINK8	646424	broad.mit.edu	37	chr3	48361353	48361353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattaagataaaaataccgGccgggcgcggtggctcatgc	12	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48361353	A	A	48361353	1	1	62	0	1	0	0	0	0	0	0	0	15183	1218	42	4		4	SPINK8	3	48361353	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2142720	48361353	149661077	224	75428											
IQCF1	132141	broad.mit.edu	37	chr3	51885678	51885678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattcctcggtcctccttGcgttttgggaggaaaactag	10	9	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51885678	T	T	51885678	1	4	62	0	1	0	0	0	0	0	0	0	7877	1334	46	3		3	IQCF1	3	51885678	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3524325	51885678	146136752	225	75429											
ASB14	142686	broad.mit.edu	37	chr3	57319495	57319495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttaccatagaaaatgaGgatttaactttttttcctcc	4	9	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57319495	T	T	57319495	1	4	62	0	1	0	0	0	0	0	0	0	1022	1015	35	2		2	ASB14	3	57319495	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5433817	57319495	140702935	226	75430											
PTPRG	5793	broad.mit.edu	37	chr3	61601133	61601133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcggagtggtgctctgggCctttcaatcctatcaggtga	13	10	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61601133	A	A	61601133	1	1	62	0	1	0	0	0	0	0	0	0	12910	754	26	3		3	PTPRG	3	61601133	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4281638	61601133	136421297	227	75431											
CADPS	8618	broad.mit.edu	37	chr3	62681555	62681555	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgtttttggccatgctctGagcccatattatttctgcaa	7	11	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62681555	T	T	62681555	1	4	62	0	1	0	0	0	0	0	0	0	2596	1305	45	3		3	CADPS	3	62681555	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1080422	62681555	135340875	228	75432											
MAGI1	9223	broad.mit.edu	37	chr3	65593111	65593111	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcatcctcactcccatcaTgaccattacacatcacagca	2	17	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65593111	A	A	65593111	1	1	62	0	1	0	0	0	0	0	0	0	9282	1479	51	5		5	MAGI1	3	65593111	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2911556	65593111	132429319	229	75433											
MAGI1	9223	broad.mit.edu	37	chr3	65903228	65903228	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagtcatccttcagtaaatGaatggataaaagaactatgg	8	6	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65903228	T	T	65903228	1	4	62	0	1	0	0	0	0	0	0	0	9282	1305	45	3		3	MAGI1	3	65903228	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	310117	65903228	132119202	230	75434											
SUCLG2	8801	broad.mit.edu	37	chr3	67443687	67443687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcagggagttccctttcCtagtcaaagaaaggggtgac	14	8	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67443687	A	A	67443687	1	1	62	0	1	0	0	0	0	0	0	0	15483	696	24	2		2	SUCLG2	3	67443687	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1540459	67443687	130578743	231	75435											
FAM19A1	407738	broad.mit.edu	37	chr3	68481336	68481336	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttataaactagggaaaagggGaggttggggagaagctggga	18	2	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68481336	C	C	68481336	1	2	62	0	1	0	0	0	0	0	0	0	5578	1189	41	4		4	FAM19A1	3	68481336	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1037649	68481336	129541094	232	75436											
RYBP	23429	broad.mit.edu	37	chr3	72424604	72424604	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaggtaagctctgtgtgCgcgcacacgcacgagtgtga	14	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72424604	A	A	72424604	1	1	62	0	1	0	0	0	0	0	0	0	13877	783	27	3		3	RYBP	3	72424604	3'UTR	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3943268	72424604	125597826	233	75437											
CNTN3	5067	broad.mit.edu	37	chr3	74334529	74334529	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgtaagcccggacagcCgtgtaataggccaggttgct	13	10	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74334529	G	G	74334529	2	3	62	1	0	0	0	0	0	0	0	1	3674	639	23	4		4	CNTN3	3	74334529	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1909925	74334529	123687901	234	75438											
ROBO1	6091	broad.mit.edu	37	chr3	78725312	78725312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaaaggacatccacaccAaaaacccatctatacatcac	3	14	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78725312	G	G	78725312	1	3	62	0	1	0	0	0	0	0	0	0	13624	145	5	5		5	ROBO1	3	78725312	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4390783	78725312	119297118	235	75439											
CADM2	253559	broad.mit.edu	37	chr3	85702136	85702136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttcaccatgttggtcagGctggtctccaactcctgacc	10	13	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85702136	T	T	85702136	1	4	62	0	1	0	0	0	0	0	0	0	2593	1218	42	3		3	CADM2	3	85702136	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6976824	85702136	112320294	236	75440											
ABI3BP	25890	broad.mit.edu	37	chr3	100560912	100560912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaagtaatatcaaaagCaatgctgaagagcaccatct	7	8	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100560912	A	A	100560912	1	1	62	0	1	0	0	0	0	0	0	0	91	725	25	3		3	ABI3BP	3	100560912	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	14858776	100560912	97461518	237	75441											
HHLA2	11148	broad.mit.edu	37	chr3	108077387	108077387	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggaagttacaatcggggtCctgaagaatgctgggaaatc	13	6	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108077387	A	A	108077387	1	1	62	0	1	0	0	0	0	0	0	0	7162	870	30	3		3	HHLA2	3	108077387	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	7516475	108077387	89945043	238	75442											
CD96	10225	broad.mit.edu	37	chr3	111342558	111342558	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcacagttaaacatacgaaTgtaaatacatataataattt	5	5	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111342558	C	C	111342558	1	2	62	0	1	0	0	0	0	0	0	0	3078	1479	51	5		5	CD96	3	111342558	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3265171	111342558	86679872	239	75443											
LSAMP	4045	broad.mit.edu	37	chr3	115584676	115584676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaagggagttaggttaacCccagacacagaagccatctt	9	10	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115584676	A	A	115584676	1	1	62	0	1	0	0	0	0	0	0	0	9135	638	22	2		2	LSAMP	3	115584676	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4242118	115584676	82437754	240	75444											
LSAMP	4045	broad.mit.edu	37	chr3	115624917	115624917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggaaccttatggaaagCaattagagcttccatccaga	9	9	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115624917	A	A	115624917	1	1	62	0	1	0	0	0	0	0	0	0	9135	725	25	3		3	LSAMP	3	115624917	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	40241	115624917	82397513	241	75445											
LSAMP	4045	broad.mit.edu	37	chr3	115774404	115774404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacactgccctgcctcacaCaaaaatgaaaatgactacat	5	12	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115774404	A	A	115774404	1	1	62	0	1	0	0	0	0	0	0	0	9135	493	17	3		3	LSAMP	3	115774404	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	149487	115774404	82248026	242	75446											
UROC1	131669	broad.mit.edu	37	chr3	126217049	126217049	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctcctcaccctgggcccGctggcttgttgggggagggg	17	13	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126217049	A	A	126217049	1	1	62	0	1	0	0	0	0	0	0	0	17154	1102	38	4		4	UROC1	3	126217049	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	10442645	126217049	71805381	243	75447											
CHCHD6	84303	broad.mit.edu	37	chr3	126497141	126497141	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatactttgcaatggaatgGttggatcaaatagtaactct	8	5	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126497141	A	A	126497141	1	1	62	0	1	0	0	0	0	0	0	0	3351	1276	44	4		4	CHCHD6	3	126497141	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	280092	126497141	71525289	244	75448											
MGLL	11343	broad.mit.edu	37	chr3	127440706	127440709	+	Intron	DEL	TGTC	-	-													gtcagccaaccagcctgcttTgtctgtaggtagatttggcc					rs138910019		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127440709	-	-	127440706	6	5	62	0	1	1	0	1	0	0	0	0	9649	1827	63	0		0	MGLL	3	127440706	Intron	DEL	TGTC	TCGA-17-Z032-01A-01W-0746-08	943565	127440706	70581724	245	75449											
KIAA1257	57501	broad.mit.edu	37	chr3	128680014	128680014	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcactttaaatttttcCatcctgcaagatctaaataa	4	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128680014	A	A	128680014	1	1	62	0	1	0	0	0	0	0	0	0	8288	609	21	2		2	KIAA1257	3	128680014	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1239308	128680014	69342416	246	75450											
TMEM108	66000	broad.mit.edu	37	chr3	132961136	132961136	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatactgctattctgcataGagttattaatatatgacaca	6	6	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132961136	C	C	132961136	1	2	62	0	1	0	0	0	0	0	0	0	16147	957	33	4		4	TMEM108	3	132961136	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4281122	132961136	65061294	247	75451											
EPHB1	2047	broad.mit.edu	37	chr3	134594256	134594256	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgtgggcagtatgagaGgtctcagtccctgtgtcccc	14	11	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134594256	A	A	134594256	1	1	62	0	1	0	0	0	0	0	0	0	5216	1015	35	4		4	EPHB1	3	134594256	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1633120	134594256	63428174	248	75452											
CLSTN2	64084	broad.mit.edu	37	chr3	139660076	139660076	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggaggcctgagctggggaAgagcactgagctgaagatcc	18	8	0	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139660076	G	G	139660076	1	3	62	0	1	0	0	0	0	0	0	0	3594	87	3	5		5	CLSTN2	3	139660076	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	5065820	139660076	58362354	249	75453											
SLC9A9	285195	broad.mit.edu	37	chr3	142995427	142995427	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcatattaccaaggaatagGagaaacatgatctaggtaga	10	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142995427	A	A	142995427	1	1	62	0	1	0	0	0	0	0	0	0	14835	1189	41	4		4	SLC9A9	3	142995427	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3335351	142995427	55027003	250	75454											
SLC9A9	285195	broad.mit.edu	37	chr3	143200487	143200487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttctcaaacttccatgtGcacatgaattacctagggat	7	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143200487	T	T	143200487	1	4	62	0	1	0	0	0	0	0	0	0	14835	1334	46	3		3	SLC9A9	3	143200487	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	205060	143200487	54821943	251	75455											
SLC9A9	285195	broad.mit.edu	37	chr3	143452139	143452139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagttttcaagtcctctcaCactcaggctcaagtccagat	6	13	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143452139	A	A	143452139	1	1	62	0	1	0	0	0	0	0	0	0	14835	493	17	3		3	SLC9A9	3	143452139	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	251652	143452139	54570291	252	75456											
CP	1356	broad.mit.edu	37	chr3	148894025	148894025	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcttctagaattactacCtggatattcaccttcatttt	5	9	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148894025	G	G	148894025	1	3	62	0	1	0	0	0	0	0	0	0	3819	696	24	4		4	CP	3	148894025	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5441886	148894025	49128405	253	75457											
MED12L	116931	broad.mit.edu	37	chr3	150910380	150910380	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcattgactcaggaaccaCtaacatttttgatgaagtag	10	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150910380	G	G	150910380	1	3	62	0	1	0	0	0	0	0	0	0	9522	580	20	4		4	MED12L	3	150910380	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2016355	150910380	47112050	254	75458											
RSRC1	51319	broad.mit.edu	37	chr3	157862452	157862452	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatacccagtaatgggattgCtgggtcaaatggtatttcta	10	6	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157862452	T	T	157862452	1	4	62	0	1	0	0	0	0	0	0	0	13825	812	28	4		4	RSRC1	3	157862452	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	6952072	157862452	40159978	255	75459											
SCHIP1	29970	broad.mit.edu	37	chr3	159167096	159167096	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagccatttgcaaggcaGcaaaatcaagaaggagacat	9	8	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159167096	A	A	159167096	1	1	62	0	1	0	0	0	0	0	0	0	14017	986	34	4		4	SCHIP1	3	159167096	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1304644	159167096	38855334	256	75460											
PPM1L	151742	broad.mit.edu	37	chr3	160602070	160602070	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaagaaaggctttgtggagGagctggcatttaggtgtgta	15	4	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160602070	A	A	160602070	1	1	62	0	1	0	0	0	0	0	0	0	12445	1189	41	4		4	PPM1L	3	160602070	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1434974	160602070	37420360	257	75461											
FNDC3B	64778	broad.mit.edu	37	chr3	172050677	172050677	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaggagaaattacagtgtGatggagataaatttttattt	9	4	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172050677	T	T	172050677	1	4	62	0	1	0	0	0	0	0	0	0	6028	1305	45	3		3	FNDC3B	3	172050677	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	11448607	172050677	25971753	258	75462											
ZMAT3	64393	broad.mit.edu	37	chr3	178764156	178764156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtatgcaaatttgcaGggaaaatagcagacaggagg	13	4	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178764156	T	T	178764156	1	4	62	0	1	0	0	0	0	0	0	0	17819	1015	35	2		2	ZMAT3	3	178764156	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6713479	178764156	19258274	259	75463											
LPP	4026	broad.mit.edu	37	chr3	188277253	188277253	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaatacaatttgatttttAtgagttaaagatgatggtac	8	2	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	188277253	G	G	188277253	1	3	62	0	1	0	0	0	0	0	0	0	9010	464	16	5		5	LPP	3	188277253	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	9513097	188277253	9745177	260	75464											
FGF12	2257	broad.mit.edu	37	chr3	192325107	192325107	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgagcaaagaagagaggAgcacagagagaaggtgcttc	15	6	0	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192325107	G	G	192325107	1	3	62	0	1	0	0	0	0	0	0	0	5898	319	11	5		5	FGF12	3	192325107	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4047854	192325107	5697323	261	75465											
GRK4	2868	broad.mit.edu	37	chr4	3030843	3030843	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccatgttgtcacacacgttGaatgtatactgtgttactgg	9	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3030843	C	C	3030843	1	2	62	0	1	0	0	0	0	0	0	0	6857	1305	45	4		4	GRK4	4	3030843	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08		3030843	188123433	262	75466											
STK32B	55351	broad.mit.edu	37	chr4	5417494	5417494	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctgagattagagggtggTatgttaaactgctggtgctt	14	4	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5417494	C	C	5417494	1	2	62	0	1	0	0	0	0	0	0	0	15416	1653	57	5		5	STK32B	4	5417494	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2386651	5417494	185736782	263	75467											
EVC	2121	broad.mit.edu	37	chr4	5720978	5720978	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaccttcgggttttagaaaGacgacactcaaaatctgctc	8	10	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5720978	C	C	5720978	3	2	62	1	0	0	0	0	1	0	0	0	5327	942	33	4	184	4	EVC	4	5720978	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	303484	5720978	185433298	264	75468											
JAKMIP1	152789	broad.mit.edu	37	chr4	6066770	6066770	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtatgatgttagcaacgaCtgaggattgccagagtctac	11	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6066770	A	A	6066770	1	1	62	0	1	0	0	0	0	0	0	0	8010	580	20	3		3	JAKMIP1	4	6066770	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	345792	6066770	185087506	265	75469											
PROM1	8842	broad.mit.edu	37	chr4	16027302	16027302	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatgtgtgtacacacccTcctgtgtgaacatatgcatg	10	9	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16027302	A	A	16027302	1	1	62	0	1	0	0	0	0	0	0	0	12661	1566	54	5		5	PROM1	4	16027302	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	9960532	16027302	175126974	266	75470											
LDB2	9079	broad.mit.edu	37	chr4	16674495	16674495	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcctccctccctctcttTcttccttccttccttttttt	0	18	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16674495	C	C	16674495	1	2	62	0	1	0	0	0	0	0	0	0	8768	1798	62	5		5	LDB2	4	16674495	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	647193	16674495	174479781	267	75471											
KCNIP4	80333	broad.mit.edu	37	chr4	21937080	21937080	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcaccacctatgccatcCaaactgctgtccctacacat	5	16	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21937080	T	T	21937080	1	4	62	0	1	0	0	0	0	0	0	0	8112	609	21	4		4	KCNIP4	4	21937080	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5262585	21937080	169217196	268	75472											
ARAP2	116984	broad.mit.edu	37	chr4	36072140	36072140	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctgaaacagagtctgtctCtcccagtggcagacagagca	10	11	3	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36072140	A	A	36072140	1	1	62	0	1	0	0	0	0	0	0	0	841	928	32	3		3	ARAP2	4	36072140	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	14135060	36072140	155082136	269	75473											
RFC1	5981	broad.mit.edu	37	chr4	39311570	39311570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaagacagttatcgattaCaaaggaaaaaatagtcactt	7	7	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39311570	A	A	39311570	1	1	62	0	1	0	0	0	0	0	0	0	13352	493	17	3		3	RFC1	4	39311570	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3239430	39311570	151842706	270	75474											
LIMCH1	22998	broad.mit.edu	37	chr4	41571179	41571179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaataatgctgcgtgacctGttaccccacttgagagatgc	9	10	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41571179	A	A	41571179	1	1	62	0	1	0	0	0	0	0	0	0	8869	1392	48	4		4	LIMCH1	4	41571179	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2259609	41571179	149583097	271	75475											
KCTD8	386617	broad.mit.edu	37	chr4	44248586	44248586	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctattctgaaaattaaaaacTtttctttggctcggattcac	5	8	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44248586	A	A	44248586	1	1	62	0	1	0	0	0	0	0	0	0	8185	1624	56	5		5	KCTD8	4	44248586	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2677407	44248586	146905690	272	75476											
GABRB1	2560	broad.mit.edu	37	chr4	47033839	47033839	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtctgctggatcatgtatCttgttgtttgggggtaggtg	16	4	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47033839	G	G	47033839	1	3	62	0	1	0	0	0	0	0	0	0	6226	928	32	4		4	GABRB1	4	47033839	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2785253	47033839	144120437	273	75477											
EPHA5	2044	broad.mit.edu	37	chr4	66189735	66189735	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctaaggtttagaaatcaCtgttttcccttttccccctt	4	11	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66189735	T	T	66189735	1	4	62	0	1	0	0	0	0	0	0	0	5212	580	20	4		4	EPHA5	4	66189735	3'UTR	SNP	C	TCGA-17-Z032-01A-01W-0746-08	19155896	66189735	124964541	274	75478											
C4orf40	401137	broad.mit.edu	37	chr4	71019977	71019977	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttcctagacagactaaAaaagccatgtattctttcgt	7	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71019977	C	C	71019977	1	2	62	0	1	0	0	0	0	0	0	0	2292	29	1	5		5	C4orf40	4	71019977	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4830242	71019977	120134299	275	75479											
ART3	419	broad.mit.edu	37	chr4	77022301	77022301	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccttagcttactggttTggtatattagagactctcct	7	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77022301	A	A	77022301	1	1	62	0	1	0	0	0	0	0	0	0	1002	1827	63	5		5	ART3	4	77022301	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	6002324	77022301	114131975	276	75480											
MRPL1	65008	broad.mit.edu	37	chr4	78783681	78783681	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgttaaaattgtcgctcTgagtacacttgcaggatcaa	9	9	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78783681	A	A	78783681	1	1	62	0	1	0	0	0	0	0	0	0	9868	1595	55	5		5	MRPL1	4	78783681	5'Flank	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1761380	78783681	112370595	277	75481											
FRAS1	80144	broad.mit.edu	37	chr4	79207526	79207526	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcagctaatcaaatggttCctttctctttcttcaacatt	3	10	5	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79207526	T	T	79207526	1	4	62	0	1	0	0	0	0	0	0	0	6102	870	30	4		4	FRAS1	4	79207526	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	423845	79207526	111946750	278	75482											
ARHGAP24	83478	broad.mit.edu	37	chr4	86552240	86552240	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagagagagtaagtgtatgGttgagtttatagagttgaaa	13	0	0	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86552240	A	A	86552240	1	1	62	0	1	0	0	0	0	0	0	0	875	1276	44	4		4	ARHGAP24	4	86552240	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7344714	86552240	104602036	279	75483											
SLC10A6	345274	broad.mit.edu	37	chr4	87746489	87746489	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcacaggggcagcacatgCaagtttggattgaaaaaaaa	10	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87746489	T	T	87746489	1	4	62	0	1	0	0	0	0	0	0	0	14491	725	25	4		4	SLC10A6	4	87746489	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1194249	87746489	103407787	280	75484											
PPM1K	152926	broad.mit.edu	37	chr4	89189558	89189558	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaaggagggcagatcacgAggtcaggagatcgagaccat	15	9	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89189558	G	G	89189558	1	3	62	0	1	0	0	0	0	0	0	0	12444	319	11	5		5	PPM1K	4	89189558	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1443069	89189558	101964718	281	75485											
HERC3	8916	broad.mit.edu	37	chr4	89600007	89600007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taataagtagcatcagtcgtAtcaatctgcctggttgttct	8	8	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89600007	G	G	89600007	1	3	62	0	1	0	0	0	0	0	0	0	7126	464	16	5		5	HERC3	4	89600007	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	410449	89600007	101554269	282	75486											
SNCA	6622	broad.mit.edu	37	chr4	90743802	90743802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacgatcaggaatgtaaagCcatgagtgatttggatttgg	12	4	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90743802	A	A	90743802	1	1	62	0	1	0	0	0	0	0	0	0	14954	754	26	3		3	SNCA	4	90743802	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1143795	90743802	100410474	283	75487											
FAM190A	401145	broad.mit.edu	37	chr4	91858281	91858281	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatttcacaccgtattaaggGcataaaggagataaacagaa	8	6	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91858281	C	C	91858281	1	2	62	0	1	0	0	0	0	0	0	0	5568	1218	42	4		4	FAM190A	4	91858281	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1114479	91858281	99295995	284	75488											
GRID2	2895	broad.mit.edu	37	chr4	93239729	93239729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggagtgcagtggcacGctcatggcttactgcagtct	14	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93239729	T	T	93239729	1	4	62	0	1	0	0	0	0	0	0	0	6838	1102	38	3		3	GRID2	4	93239729	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1381448	93239729	97914547	285	75489											
GRID2	2895	broad.mit.edu	37	chr4	94506329	94506329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagcaatttctttgattgaGtttattttcaggatcatact	7	5	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94506329	T	T	94506329	1	4	62	0	1	0	0	0	0	0	0	0	6838	1044	36	3		3	GRID2	4	94506329	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1266600	94506329	96647947	286	75490											
BMPR1B	658	broad.mit.edu	37	chr4	95804145	95804145	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtatgtgtgtgtgtgtgtGtgtgtgtgtgtgtttccttc	16	3	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95804145	C	C	95804145	1	2	62	0	1	0	0	0	0	0	0	0	1476	1392	48	4		4	BMPR1B	4	95804145	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1297816	95804145	95350131	287	75491											
BANK1	55024	broad.mit.edu	37	chr4	102429413	102429414	+	Intron	DNP	TG	CT	CT													tacctctgagggctctgttcTgttccattgatctatatctc							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	102429414	CT	CT	102429413	1	2	62	0	1	0	0	0	0	0	0	0	1314	1595	55	5		5	BANK1	4	102429413	Intron	DNP	TG	TCGA-17-Z032-01A-01W-0746-08	6625268	102429413	88724863	288	75492											
SLC39A8	64116	broad.mit.edu	37	chr4	103198160	103198160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatctcacaataataagaaCtatttatgacaaacccacag	3	9	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103198160	A	A	103198160	1	1	62	0	1	0	0	0	0	0	0	0	14738	580	20	3		3	SLC39A8	4	103198160	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	768747	103198160	87956116	289	75493											
HADH	3033	broad.mit.edu	37	chr4	108953460	108953460	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagggaaaagcacattgatCcttgtcgtagtctactcaac	8	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108953460	T	T	108953460	1	4	62	0	1	0	0	0	0	0	0	0	7008	870	30	4		4	HADH	4	108953460	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5755300	108953460	82200816	290	75494											
GYPA	2993	broad.mit.edu	37	chr4	144995010	144995010	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtcaaaactcatcatgtgGtctacataacataaacatca	4	9	5	0	rs113195453	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144995010	A	A	144995010	1	1	62	0	1	0	0	0	0	0	0	0	6973	1276	44	4		4	GYPA	4	144995010	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	36041550	144995010	46159266	291	75495											
LRBA	987	broad.mit.edu	37	chr4	151370520	151370520	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtggatgccatgaggGgtagaggcaagaacactgag	15	7	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151370520	A	A	151370520	1	1	62	0	1	0	0	0	0	0	0	0	9018	1247	43	4		4	LRBA	4	151370520	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6375510	151370520	39783756	292	75496											
PLRG1	5356	broad.mit.edu	37	chr4	155467586	155467586	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttgatcacagcccacaTggtattaaagcagcccagaa	8	10	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155467586	A	A	155467586	1	1	62	0	1	0	0	0	0	0	0	0	12201	1479	51	5		5	PLRG1	4	155467586	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4097066	155467586	35686690	293	75497											
FSTL5	56884	broad.mit.edu	37	chr4	162513653	162513653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctattgttcaactcctaCttatgagtgagaacatgtag	8	7	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162513653	A	A	162513653	1	1	62	0	1	0	0	0	0	0	0	0	6140	580	20	3		3	FSTL5	4	162513653	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	7046067	162513653	28640623	294	75498											
MARCH1	55016	broad.mit.edu	37	chr4	164481693	164481693	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtttaaaattattttgGcaatttattttaaaaattca	4	2	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164481693	C	C	164481693	1	2	62	0	1	0	0	0	0	0	0	0	9390	1218	42	4		4	MARCH1	4	164481693	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1968040	164481693	26672583	295	75499											
MARCH1	55016	broad.mit.edu	37	chr4	164490114	164490114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccagcactcaaaagactGtctgtagcagttggggccaa	10	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164490114	T	T	164490114	1	4	62	0	1	0	0	0	0	0	0	0	9390	1392	48	3		3	MARCH1	4	164490114	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	8421	164490114	26664162	296	75500											
SPOCK3	50859	broad.mit.edu	37	chr4	167878073	167878073	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catacacagtgagcagcatcCcaactcttcccttgcactct	5	16	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167878073	T	T	167878073	1	4	62	0	1	0	0	0	0	0	0	0	15199	638	22	4		4	SPOCK3	4	167878073	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3387959	167878073	23276203	297	75501											
SPOCK3	50859	broad.mit.edu	37	chr4	167944923	167944923	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtatgtttcccacgtggaGaaatgggctagagaaaggac	13	6	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167944923	T	T	167944923	1	4	62	0	1	0	0	0	0	0	0	0	15199	957	33	3		3	SPOCK3	4	167944923	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	66850	167944923	23209353	298	75502											
DDX60L	91351	broad.mit.edu	37	chr4	169342711	169342711	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctactcatgaggctgaggCgggagaatcacttgaacacg	13	9	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169342711	T	T	169342711	1	4	62	0	1	0	0	0	0	0	0	0	4412	783	27	4		4	DDX60L	4	169342711	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1397788	169342711	21811565	299	75503											
PALLD	23022	broad.mit.edu	37	chr4	169438231	169438231	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacagggaatgcgccacagGaaaacatggcagcaggaagc	14	10	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169438231	T	T	169438231	1	4	62	0	1	0	0	0	0	0	0	0	11501	1189	41	3		3	PALLD	4	169438231	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	95520	169438231	21716045	300	75504											
GALNTL6	442117	broad.mit.edu	37	chr4	172828873	172828873	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaacaaagccagaggcaTcacactacctgacttcaaac	6	12	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172828873	C	C	172828873	1	2	62	0	1	0	0	0	0	0	0	0	6287	1450	50	5		5	GALNTL6	4	172828873	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3390642	172828873	18325403	301	75505											
SCRG1	11341	broad.mit.edu	37	chr4	174325126	174325126	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgataatgttaatgataaTagcaatgatactagtaataa	7	2	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174325126	C	C	174325126	1	2	62	0	1	0	0	0	0	0	0	0	14049	1421	49	5		5	SCRG1	4	174325126	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1496253	174325126	16829150	302	75506											
HPGD	3248	broad.mit.edu	37	chr4	175437051	175437051	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctcaatatcactaatcatCagagaaatgcaaatcagaac	5	9	5	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175437051	A	A	175437051	1	1	62	0	1	0	0	0	0	0	0	0	7401	841	29	3		3	HPGD	4	175437051	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1111925	175437051	15717225	303	75507											
NEIL3	55247	broad.mit.edu	37	chr4	178269257	178269257	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaaggaaaccctaagaGcagtgcctctcaaactttag	8	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178269257	C	C	178269257	1	2	62	0	1	0	0	0	0	0	0	0	10415	986	34	4		4	NEIL3	4	178269257	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2832206	178269257	12885019	304	75508											
IRF2	3660	broad.mit.edu	37	chr4	185320347	185320347	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgccaggctcccatcaccatCtgtcccctgccatggggctg	10	18	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185320347	T	T	185320347	1	4	62	0	1	0	0	0	0	0	0	0	7898	928	32	4		4	IRF2	4	185320347	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	7051090	185320347	5833929	305	75509											
CCDC110	256309	broad.mit.edu	37	chr4	186379522	186379522	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaagtattttgtcttcaGtaagtctactgatgctgttt	7	6	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186379522	A	A	186379522	3	1	62	1	0	0	0	0	1	0	0	0	2773	1029	36	4	290	4	CCDC110	4	186379522	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1059175	186379522	4774754	306	75510											
CYP4V2	285440	broad.mit.edu	37	chr4	187129782	187129782	+	Intron	SNP	T	C	C													cctgccttggtccacgtgttTttctttgaagggtatttgat							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187129782	C	C	187129782	1	2	62	0	1	0	0	0	0	0	0	0	4225	1856	64	5		5	CYP4V2	4	187129782	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	750260	187129782	4024494	307	75511	341	2									
CYP4V2	285440	broad.mit.edu	37	chr4	187129791	187129791	+	Intron	SNP	A	T	T													gtccacgtgtttttctttgaAgggtatttgatgggtattta							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187129791	T	T	187129791	1	4	62	0	1	0	0	0	0	0	0	0	4225	87	3	5		5	CYP4V2	4	187129791	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	9	187129791	4024485	308	75512	341	2									
KLKB1	3818	broad.mit.edu	37	chr4	187167555	187167555	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagagactagggagggaccAatgtgtaaaagaatgcctgg	14	6	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187167555	C	C	187167555	1	2	62	0	1	0	0	0	0	0	0	0	8483	145	5	5		5	KLKB1	4	187167555	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	37764	187167555	3986721	309	75513											
FRG1	2483	broad.mit.edu	37	chr4	190875128	190875128	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataggcagtgagttcttacTcttcatatgtatcttgtata	7	6	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190875128	A	A	190875128	1	1	62	0	1	0	0	0	0	0	0	0	6106	1566	54	5		5	FRG1	4	190875128	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3707573	190875128	279148	310	75514											
PDCD6	10016	broad.mit.edu	37	chr5	290475	290475	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcctccgcctccctccgCaggtctcttggggaccggaa	11	17	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	290475	T	T	290475	1	4	62	0	1	0	0	0	0	0	0	0	11717	725	25	4		4	PDCD6	5	290475	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		290475	180624785	311	75515											
BRD9	65980	broad.mit.edu	37	chr5	876252	876252	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgtcctagagtggtctccGcctgtgatctggtccaggag	14	11	2	2	rs143034112		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	876252	A	A	876252	2	1	62	1	0	0	0	0	0	0	0	1	1516	1074	38	4		4	BRD9	5	876252	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	585777	876252	180039008	312	75516											
SLC6A19	340024	broad.mit.edu	37	chr5	1222065	1222065	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactggtgtcagggaaggaGgaaccagcaagacctgtggg	16	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1222065	A	A	1222065	1	1	62	0	1	0	0	0	0	0	0	0	14796	1015	35	4		4	SLC6A19	5	1222065	3'UTR	SNP	G	TCGA-17-Z032-01A-01W-0746-08	345813	1222065	179693195	313	75517											
ADAMTS16	170690	broad.mit.edu	37	chr5	5268149	5268149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggtgtggccttggggaaGtggctgcacctctttatgcc	15	10	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5268149	T	T	5268149	1	4	62	0	1	0	0	0	0	0	0	0	261	1044	36	3		3	ADAMTS16	5	5268149	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4046084	5268149	175647111	314	75518											
SEMA5A	9037	broad.mit.edu	37	chr5	9080651	9080652	+	Intron	INS	-	A	A													tatcccagaactcttaaattINSaaaaaaaaaaaaaactgaat					rs79051988		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9080652	A	A	9080651	6	5	62	0	1	1	1	0	0	0	0	0	14150	1769	61	0		0	SEMA5A	5	9080651	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	3812502	9080651	171834609	315	75519											
CTNND2	1501	broad.mit.edu	37	chr5	11107961	11107963	+	Intron	DEL	GAT	-	-													gtctcaccaggaaagaaacaGatgagtctgggaaaagtcac					rs61754615		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11107963	-	-	11107961	6	5	62	0	1	1	0	1	0	0	0	0	4054	957	33	0		0	CTNND2	5	11107961	Intron	DEL	GAT	TCGA-17-Z032-01A-01W-0746-08	2027310	11107961	169807299	316	75520											
DNAH5	1767	broad.mit.edu	37	chr5	13845203	13845203	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggagaagattgtgtgacTtgtgacaatctgattttcct	12	5	1	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13845203	C	C	13845203	1	2	62	0	1	0	0	0	0	0	0	0	4644	1624	56	5		5	DNAH5	5	13845203	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2737242	13845203	167070057	317	75521											
DNAH5	1767	broad.mit.edu	37	chr5	13908679	13908679	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtggaatcttcatactcGtcttcacattagttttgggg	10	7	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13908679	A	A	13908679	1	1	62	0	1	0	0	0	0	0	0	0	4644	1160	40	4		4	DNAH5	5	13908679	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	63476	13908679	167006581	318	75522											
FBXL7	23194	broad.mit.edu	37	chr5	15894404	15894404	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaacaaacaaacaaacaAaaaagaatatcagtcccagt	3	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15894404	G	G	15894404	1	3	62	0	1	0	0	0	0	0	0	0	5781	29	1	5		5	FBXL7	5	15894404	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1985725	15894404	165020856	319	75523											
FAM134B	54463	broad.mit.edu	37	chr5	16519699	16519700	+	Intron	INS	-	T	T													agtgttttcctcaaagctccINStttcagcccaaaataaccag							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16519700	T	T	16519699	6	5	62	0	1	1	1	0	0	0	0	0	5492	696	24	0		0	FAM134B	5	16519699	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	625295	16519699	164395561	320	75524											
CDH18	1016	broad.mit.edu	37	chr5	19550725	19550725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattttttatggctgcataGtattccatggagtatatgtg	9	5	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19550725	T	T	19550725	1	4	62	0	1	0	0	0	0	0	0	0	3133	1044	36	3		3	CDH18	5	19550725	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3031026	19550725	161364535	321	75525											
CDH18	1016	broad.mit.edu	37	chr5	19690928	19690928	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagagaaaatcccaggaccTaaaggtttcactgctgactt	9	9	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19690928	C	C	19690928	1	2	62	0	1	0	0	0	0	0	0	0	3133	1537	53	5		5	CDH18	5	19690928	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	140203	19690928	161224332	322	75526											
CDH12	1010	broad.mit.edu	37	chr5	21961824	21961824	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccatctaaaagccacggaGagatgtctagaacagattct	9	9	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21961824	T	T	21961824	1	4	62	0	1	0	0	0	0	0	0	0	3128	957	33	3		3	CDH12	5	21961824	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2270896	21961824	158953436	323	75527											
RNASEN	29102	broad.mit.edu	37	chr5	31431632	31431632	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaattttatgtgctctccaGactgtttagacatgcaagaa	7	7	1	3	rs57320855		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31431632	C	C	31431632	1	2	62	0	1	0	0	0	0	0	0	0	13528	957	33	4		4	RNASEN	5	31431632	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	9469808	31431632	149483628	324	75528											
ADAMTS12	81792	broad.mit.edu	37	chr5	33863206	33863206	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcatactgaatgggcaaAagctggaagcattccctttg	9	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33863206	C	C	33863206	1	2	62	0	1	0	0	0	0	0	0	0	257	29	1	5		5	ADAMTS12	5	33863206	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2431574	33863206	147052054	325	75529											
ADAMTS12	81792	broad.mit.edu	37	chr5	33865831	33865831	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaaccctaaagactccttCaaaagactcctagatttgat	5	10	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33865831	A	A	33865831	1	1	62	0	1	0	0	0	0	0	0	0	257	841	29	3		3	ADAMTS12	5	33865831	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2625	33865831	147049429	326	75530											
SLC45A2	51151	broad.mit.edu	37	chr5	33984667	33984667	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatagatgtggcggccagCctgcccactgttgctaccca	10	13	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33984667	T	T	33984667	3	4	62	1	0	0	0	0	1	0	0	0	14755	739	26	4	1613	4	SLC45A2	5	33984667	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	118836	33984667	146930593	327	75531											
UGT3A2	167127	broad.mit.edu	37	chr5	36069019	36069022	+	5'Flank	DEL	AGGG	-	-													agggaggaaggaagggaggaAgggagggagggagggaggga							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36069022	-	-	36069019	6	5	62	0	1	1	0	1	0	0	0	0	17090	87	3	0		0	UGT3A2	5	36069019	5'Flank	DEL	AGGG	TCGA-17-Z032-01A-01W-0746-08	2084352	36069019	144846241	328	75532											
WDR70	55100	broad.mit.edu	37	chr5	37705840	37705840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattttgtgttggaaatacCacactccaaggtagtaagga	9	6	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37705840	A	A	37705840	1	1	62	0	1	0	0	0	0	0	0	0	17448	609	21	2		2	WDR70	5	37705840	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1636821	37705840	143209420	329	75533											
RICTOR	253260	broad.mit.edu	37	chr5	38967494	38967494	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcagctgccacaaagccatCtgaaagcctccaactgtctt	6	15	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38967494	T	T	38967494	3	4	62	1	0	0	0	0	1	0	0	0	13467	913	32	4	4134	4	RICTOR	5	38967494	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1261654	38967494	141947766	330	75534											
RICTOR	253260	broad.mit.edu	37	chr5	38978759	38978759	+	Intron	DEL	A	-	-													ggtgctaaaattctctatttAaaaaaaaaaaggaagaaaag							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38978759	-	-	38978759	6	5	62	0	1	1	0	1	0	0	0	0	13467	377	13	0		0	RICTOR	5	38978759	Intron	DEL	A	TCGA-17-Z032-01A-01W-0746-08	11265	38978759	141936501	331	75535											
C5orf51	285636	broad.mit.edu	37	chr5	41907766	41907766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcatttcatcttcataCataatgtgttttttgtttaa	4	6	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41907766	A	A	41907766	1	1	62	0	1	0	0	0	0	0	0	0	2331	493	17	3		3	C5orf51	5	41907766	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2929007	41907766	139007494	332	75536											
GHR	2690	broad.mit.edu	37	chr5	42476463	42476463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccgagtagctgggattacAggcacgcgccaccatgcccg	12	15	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42476463	G	G	42476463	1	3	62	0	1	0	0	0	0	0	0	0	6435	203	7	5		5	GHR	5	42476463	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	568697	42476463	138438797	333	75537											
PARP8	79668	broad.mit.edu	37	chr5	49982019	49982019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagatgcattgcggatacaGgcgttgaatagatgcagtca	12	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49982019	T	T	49982019	1	4	62	0	1	0	0	0	0	0	0	0	11559	1015	35	2		2	PARP8	5	49982019	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7505556	49982019	130933241	334	75538											
CDC20B	166979	broad.mit.edu	37	chr5	54409984	54409984	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaaccccatggagaagaCatagccaacatcatcatctt	5	11	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54409984	T	T	54409984	1	4	62	0	1	0	0	0	0	0	0	0	3090	493	17	4		4	CDC20B	5	54409984	3'UTR	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4427965	54409984	126505276	335	75539											
ANKRD55	79722	broad.mit.edu	37	chr5	55483002	55483002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaacatattgaaagacaGgaccagctggatgtcctagg	12	7	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55483002	T	T	55483002	1	4	62	0	1	0	0	0	0	0	0	0	681	1015	35	2		2	ANKRD55	5	55483002	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1073018	55483002	125432258	336	75540											
ANKRD55	79722	broad.mit.edu	37	chr5	55515801	55515801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttagttctggcactgtggGgttagtgagtagagatgaca	14	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55515801	A	A	55515801	1	1	62	0	1	0	0	0	0	0	0	0	681	1247	43	4		4	ANKRD55	5	55515801	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	32799	55515801	125399459	337	75541											
RAB3C	115827	broad.mit.edu	37	chr5	57905339	57905339	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtaaagcacatagagcaTgtaagacccgtgctgctgtt	10	9	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57905339	G	G	57905339	1	3	62	0	1	0	0	0	0	0	0	0	13041	1479	51	5		5	RAB3C	5	57905339	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2389538	57905339	123009921	338	75542											
PDE4D	5144	broad.mit.edu	37	chr5	58596657	58596657	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcacaagtgtgggcctctgGagcttctaaccggccacctc	11	14	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58596657	T	T	58596657	1	4	62	0	1	0	0	0	0	0	0	0	11736	1189	41	3		3	PDE4D	5	58596657	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	691318	58596657	122318603	339	75543											
PDE4D	5144	broad.mit.edu	37	chr5	58987088	58987088	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcatgctgctataagacaCatgcacatgtatgtttattg	7	7	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58987088	T	T	58987088	1	4	62	0	1	0	0	0	0	0	0	0	11736	493	17	4		4	PDE4D	5	58987088	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	390431	58987088	121928172	340	75544											
CWC27	10283	broad.mit.edu	37	chr5	64118873	64118873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttaggttctgatgccaGcattgtttgctagaaatgag	10	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64118873	T	T	64118873	1	4	62	0	1	0	0	0	0	0	0	0	4103	986	34	3		3	CWC27	5	64118873	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5131785	64118873	116796387	341	75545											
CARTPT	9607	broad.mit.edu	37	chr5	71014529	71014529	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacacagattccatcatAgaacccatcacgtggagggc	9	12	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71014529	G	G	71014529	1	3	62	0	1	0	0	0	0	0	0	0	2685	435	15	5		5	CARTPT	5	71014529	5'Flank	SNP	A	TCGA-17-Z032-01A-01W-0746-08	6895656	71014529	109900731	342	75546											
COL4A3BP	10087	broad.mit.edu	37	chr5	74770847	74770847	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactagctatatctagtaccTaacatacatggtatgatact	5	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74770847	C	C	74770847	1	2	62	0	1	0	0	0	0	0	0	0	3724	1537	53	5		5	COL4A3BP	5	74770847	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3756318	74770847	106144413	343	75547											
PDE8B	8622	broad.mit.edu	37	chr5	76707611	76707611	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctgtccccgctgttgCgattattgttctgggaggtg	14	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76707611	T	T	76707611	1	4	62	0	1	0	0	0	0	0	0	0	11748	783	27	4		4	PDE8B	5	76707611	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1936764	76707611	104207649	344	75548											
EDIL3	10085	broad.mit.edu	37	chr5	83571879	83571879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatctctcttacagtcCtgagtcttgcaaagccaccc	8	14	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83571879	T	T	83571879	1	4	62	0	1	0	0	0	0	0	0	0	4955	696	24	4		4	EDIL3	5	83571879	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	6864268	83571879	97343381	345	75549											
GPR98	84059	broad.mit.edu	37	chr5	90146041	90146041	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcatcccagatcagtgctAgggtgtgacttgaggtaaag	12	7	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90146041	G	G	90146041	1	3	62	0	1	0	0	0	0	0	0	0	6787	435	15	5		5	GPR98	5	90146041	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	6574162	90146041	90769219	346	75550											
FAM172A	83989	broad.mit.edu	37	chr5	93164825	93164825	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaggccgtttgtaaagttCagactcctcagtgtgacatt	9	9	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93164825	G	G	93164825	1	3	62	0	1	0	0	0	0	0	0	0	5537	841	29	4		4	FAM172A	5	93164825	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3018784	93164825	87750435	347	75551											
FEM1C	56929	broad.mit.edu	37	chr5	114879228	114879228	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgtgctttatttatctttCaaagcagagctccagtttaa	7	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114879228	T	T	114879228	1	4	62	0	1	0	0	0	0	0	0	0	5868	841	29	4		4	FEM1C	5	114879228	5'UTR	SNP	C	TCGA-17-Z032-01A-01W-0746-08	21714403	114879228	66036032	348	75552											
COMMD10	51397	broad.mit.edu	37	chr5	115610742	115610742	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaattcccaacctctatttCatccccaagattacttccct	2	15	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115610742	A	A	115610742	1	1	62	0	1	0	0	0	0	0	0	0	3747	841	29	3		3	COMMD10	5	115610742	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	731514	115610742	65304518	349	75553											
MEGF10	84466	broad.mit.edu	37	chr5	126713885	126713885	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgatgtttctgtgcctcCctttcctcatgctttgaaca	7	12	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126713885	G	G	126713885	1	3	62	0	1	0	0	0	0	0	0	0	9553	638	22	4		4	MEGF10	5	126713885	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	11103143	126713885	54201375	350	75554											
MEGF10	84466	broad.mit.edu	37	chr5	126738350	126738350	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccacaggccaatgtcattGcagtccaggatacacagggg	12	11	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126738350	A	A	126738350	3	1	62	1	0	0	0	0	1	0	0	0	9553	1319	46	4	919	4	MEGF10	5	126738350	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	24465	126738350	54176910	351	75555											
IL9	3578	broad.mit.edu	37	chr5	135229175	135229175	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcatggtggcacgcaCctgtaatgccagctactcgg	13	13	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135229175	T	T	135229175	1	4	62	0	1	0	0	0	0	0	0	0	7777	522	18	4		4	IL9	5	135229175	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8490825	135229175	45686085	352	75556											
KLHL3	26249	broad.mit.edu	37	chr5	137065104	137065104	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcatcagatatcgtcagcTggttcagcctcaggtcagat	9	10	6	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137065104	C	C	137065104	1	2	62	0	1	0	0	0	0	0	0	0	8454	1595	55	5		5	KLHL3	5	137065104	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1835929	137065104	43850156	353	75557											
PCDHA11	56138	broad.mit.edu	37	chr5	140249780	140249780	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacgagaggacgctcagccCagcacggtcattgccctgat	12	13	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140249780	T	T	140249780	2	4	62	1	0	0	0	0	0	0	0	1	11615	581	21	4		4	PCDHA11	5	140249780	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3184676	140249780	40665480	354	75558											
PPARGC1B	133522	broad.mit.edu	37	chr5	149212595	149212595	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaggcctgcagcaacccctCccagcaggtcagatcccggc	10	18	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149212595	T	T	149212595	3	4	62	1	0	0	0	0	1	0	0	0	12397	855	30	4	984	4	PPARGC1B	5	149212595	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8962815	149212595	31702665	355	75559											
GM2A	2760	broad.mit.edu	37	chr5	151023494	151023494	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgtatgcacccagaagtgGaattgcaggatcatatggta	12	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151023494	T	T	151023494	1	4	62	0	1	0	0	0	0	0	0	0	6548	1189	41	3		3	GM2A	5	151023494	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1810899	151023494	29891766	356	75560											
G3BP1	10146	broad.mit.edu	37	chr5	151166101	151166101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttggtttcagctaaatgaTtcggtcttttcccctgtgtt	9	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151166101	A	A	151166101	1	1	62	0	1	0	0	0	0	0	0	0	6201	1508	52	5		5	G3BP1	5	151166101	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	142607	151166101	29749159	357	75561											
GRIA1	2890	broad.mit.edu	37	chr5	152915860	152915860	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagacttttaatcgtccctcAgggccaagtttagatctaat	7	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152915860	G	G	152915860	1	3	62	0	1	0	0	0	0	0	0	0	6833	203	7	5		5	GRIA1	5	152915860	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1749759	152915860	27999400	358	75562											
SGCD	6444	broad.mit.edu	37	chr5	155383808	155383809	+	Intron	DEL	CC	-	-													cctttttgttggactcagggCccccccccccggttaatcca							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155383809	-	-	155383808	6	5	62	0	1	1	0	1	0	0	0	0	14314	754	26	0		0	SGCD	5	155383808	Intron	DEL	CC	TCGA-17-Z032-01A-01W-0746-08	2467948	155383808	25531452	359	75563											
SGCD	6444	broad.mit.edu	37	chr5	155459513	155459513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggcaggcagatcacaaGgtcaggagattgaaaccatc	12	10	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155459513	T	T	155459513	1	4	62	0	1	0	0	0	0	0	0	0	14314	1015	35	2		2	SGCD	5	155459513	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	75705	155459513	25455747	360	75564											
SGCD	6444	broad.mit.edu	37	chr5	156167261	156167261	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acattgatacagaccaggctCttcaatatggctgttggttc	9	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156167261	G	G	156167261	1	3	62	0	1	0	0	0	0	0	0	0	14314	928	32	4		4	SGCD	5	156167261	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	707748	156167261	24747999	361	75565											
GABRB2	2561	broad.mit.edu	37	chr5	160974618	160974618	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagaaaggcaatgctgtctCtccaggtttcggtctgattc	11	10	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160974618	G	G	160974618	1	3	62	0	1	0	0	0	0	0	0	0	6227	928	32	4		4	GABRB2	5	160974618	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4807357	160974618	19940642	362	75566											
NUDCD2	134492	broad.mit.edu	37	chr5	162883926	162883926	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacatactcatacacttcatCtgacttacttctttttggaa	3	11	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162883926	G	G	162883926	1	3	62	0	1	0	0	0	0	0	0	0	10818	928	32	4		4	NUDCD2	5	162883926	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1909308	162883926	18031334	363	75567											
ODZ2	57451	broad.mit.edu	37	chr5	167045701	167045701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctgggaggccatcaacCttctttgcaataaatttcct	8	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167045701	A	A	167045701	1	1	62	0	1	0	0	0	0	0	0	0	10930	696	24	2		2	ODZ2	5	167045701	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4161775	167045701	13869559	364	75568											
ODZ2	57451	broad.mit.edu	37	chr5	167625260	167625260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaggctggagtacagtgGcgcaatctcggcccactgca	12	14	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167625260	T	T	167625260	1	4	62	0	1	0	0	0	0	0	0	0	10930	1218	42	3		3	ODZ2	5	167625260	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	579559	167625260	13290000	365	75569											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171765474	171765474	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccactgctgttcttctcccGgacttcaaacactgtccctt	6	16	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171765474	A	A	171765474	3	1	62	1	0	0	0	0	1	0	0	0	14370	1115	39	4	104	4	SH3PXD2B	5	171765474	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4140214	171765474	9149786	366	75570											
FGFR4	2264	broad.mit.edu	37	chr5	176518580	176518580	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatgttctcagggcctagaGagcttgacaagagccctgtg	13	9	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176518580	A	A	176518580	1	1	62	0	1	0	0	0	0	0	0	0	5925	957	33	4		4	FGFR4	5	176518580	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4753106	176518580	4396680	367	75571											
MXD3	83463	broad.mit.edu	37	chr5	176740930	176740930	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgacctaattggtgaggccAgagaaggctttactggggaa	14	6	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176740930	G	G	176740930	1	3	62	0	1	0	0	0	0	0	0	0	10094	203	7	5		5	MXD3	5	176740930	5'Flank	SNP	A	TCGA-17-Z032-01A-01W-0746-08	222350	176740930	4174330	368	75572											
GRM6	2916	broad.mit.edu	37	chr5	178418427	178418427	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgtgccactgtcccacctGatgtcatcctcattggcaaa	7	13	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178418427	A	A	178418427	2	1	62	1	0	0	0	0	0	0	0	1	6867	1280	45	4		4	GRM6	5	178418427	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1677497	178418427	2496833	369	75573											
EXOC2	55770	broad.mit.edu	37	chr6	668506	668506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcccacctgcttcttaGccaactaacttccaccattc	2	19	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	668506	T	T	668506	1	4	62	0	1	0	0	0	0	0	0	0	5344	986	34	3		3	EXOC2	6	668506	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08		668506	170446561	370	75574											
WRNIP1	56897	broad.mit.edu	37	chr6	2784472	2784472	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtcaccaagtgtacaagcAgtggtggtctgtggtcgcct	14	9	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2784472	C	C	2784472	1	2	62	0	1	0	0	0	0	0	0	0	17530	203	7	5		5	WRNIP1	6	2784472	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2115966	2784472	168330595	371	75575											
SLC22A23	63027	broad.mit.edu	37	chr6	3432473	3432473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggatcttcactgagagcCtgcggcaggaaagctctgtt	12	11	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3432473	A	A	3432473	1	1	62	0	1	0	0	0	0	0	0	0	14566	696	24	2		2	SLC22A23	6	3432473	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	648001	3432473	167682594	372	75576											
CDYL	9425	broad.mit.edu	37	chr6	4850578	4850578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatacctttcaccgttgctGtgtattttatctttaaatgt	5	7	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4850578	T	T	4850578	1	4	62	0	1	0	0	0	0	0	0	0	3215	1392	48	3		3	CDYL	6	4850578	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1418105	4850578	166264489	373	75577											
FARS2	10667	broad.mit.edu	37	chr6	5535077	5535077	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgcacacacacgcacgcaTacacacttgcacgcgcacac	6	19	0	0	rs144943953	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5535077	C	C	5535077	1	2	62	0	1	0	0	0	0	0	0	0	5735	1421	49	5		5	FARS2	6	5535077	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	684499	5535077	165579990	374	75578											
F13A1	2162	broad.mit.edu	37	chr6	6318523	6318523	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgagaggcagaaagacaAagcaacttctctgaggttac	11	7	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6318523	C	C	6318523	1	2	62	0	1	0	0	0	0	0	0	0	5383	29	1	5		5	F13A1	6	6318523	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	783446	6318523	164796544	375	75579											
LY86	9450	broad.mit.edu	37	chr6	6653697	6653697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattcgtgtctacaaacaCatcaccgctccgtggctgct	8	14	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6653697	A	A	6653697	1	1	62	0	1	0	0	0	0	0	0	0	9188	493	17	3		3	LY86	6	6653697	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	335174	6653697	164461370	376	75580											
BMP6	654	broad.mit.edu	37	chr6	7859219	7859219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaacaacgcaaattcatgGggccccagagtgactcggta	11	11	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7859219	A	A	7859219	1	1	62	0	1	0	0	0	0	0	0	0	1470	1247	43	4		4	BMP6	6	7859219	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1205522	7859219	163255848	377	75581											
EDN1	1906	broad.mit.edu	37	chr6	12289331	12289331	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctttctttattaaggcatGatgtcacctgtacagtaact	7	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12289331	C	C	12289331	1	2	62	0	1	0	0	0	0	0	0	0	4956	1305	45	4		4	EDN1	6	12289331	5'Flank	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4430112	12289331	158825736	378	75582											
PHACTR1	221692	broad.mit.edu	37	chr6	13045379	13045379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattcttgcaaataggcatGtcttaattaaaagcatgtgt	7	6	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13045379	T	T	13045379	1	4	62	0	1	0	0	0	0	0	0	0	11904	1392	48	3		3	PHACTR1	6	13045379	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	756048	13045379	158069688	379	75583											
SLC17A3	10786	broad.mit.edu	37	chr6	25847043	25847043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagacggggtttcaccatGttggccaggatggtcttgat	14	7	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25847043	T	T	25847043	1	4	62	0	1	0	0	0	0	0	0	0	14531	1392	48	3		3	SLC17A3	6	25847043	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	12801664	25847043	145268024	380	75584											
HIST1H3G	8355	broad.mit.edu	37	chr6	26271336	26271336	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcgcaggcctcctgcaGggccatcaccgcggaactct	12	17	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26271336	C	C	26271336	3	2	62	1	0	0	0	0	1	0	0	0	7228	991	35	4	137	4	HIST1H3G	6	26271336	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	424293	26271336	144843731	381	75585											
HIST1H2BM	8342	broad.mit.edu	37	chr6	27782028	27782028	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaacatcatgagtgtactGtgtagtggtgaagcagctga	13	6	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27782028	T	T	27782028	1	4	62	0	1	0	0	0	0	0	0	0	7219	1392	48	3		3	HIST1H2BM	6	27782028	5'Flank	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1510692	27782028	143333039	382	75586											
PGBD1	84547	broad.mit.edu	37	chr6	28265639	28265639	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcaaaattcacataacaGatgacatttaaatcattaat	2	6	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28265639	A	A	28265639	1	1	62	0	1	0	0	0	0	0	0	0	11875	957	33	4		4	PGBD1	6	28265639	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	483611	28265639	142849428	383	75587											
MICB	4277	broad.mit.edu	37	chr6	31467635	31467635	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctggggccctcagcaAgttctcatctttcagtggga	12	12	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31467635	C	C	31467635	1	2	62	0	1	0	0	0	0	0	0	0	9668	87	3	5		5	MICB	6	31467635	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	3201996	31467635	139647432	384	75588											
TNXB	7148	broad.mit.edu	37	chr6	31978876	31978876	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggcggctggagggtgggcaGagtgcaggggggagaggaaa	25	4	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31978876	C	C	31978876	1	2	62	0	1	0	0	0	0	0	0	0	16469	957	33	4		4	TNXB	6	31978876	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	511241	31978876	139136191	385	75589											
HLA-DQB1	3119	broad.mit.edu	37	chr6	32632627	32632627	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtagttgtgtctgcacacCgtgtccaactccgcccgggt	11	14	1	0	rs1130389		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32632627	T	T	32632627	2	4	62	1	0	0	0	0	0	0	0	1	7273	639	23	4		4	HLA-DQB1	6	32632627	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	653751	32632627	138482440	386	75590											
SLC26A8	116369	broad.mit.edu	37	chr6	35944890	35944890	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accatggtccaagtggctctTcagttaaaaaagactcctgc	8	11	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35944890	C	C	35944890	1	2	62	0	1	0	0	0	0	0	0	0	14637	1798	62	5		5	SLC26A8	6	35944890	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3312263	35944890	135170177	387	75591											
TRERF1	55809	broad.mit.edu	37	chr6	42365391	42365391	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagcatttattttccaatAaaaaccccactctattaaac	2	11	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42365391	G	G	42365391	1	3	62	0	1	0	0	0	0	0	0	0	16599	377	13	5		5	TRERF1	6	42365391	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	6420501	42365391	128749676	388	75592											
TMEM63B	55362	broad.mit.edu	37	chr6	44116412	44116412	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaacaggtgtcagggcagGctttccagggcctgggatgg	17	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44116412	A	A	44116412	1	1	62	0	1	0	0	0	0	0	0	0	16314	1218	42	4		4	TMEM63B	6	44116412	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1751021	44116412	126998655	389	75593											
SUPT3H	8464	broad.mit.edu	37	chr6	45251529	45251529	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaatatacattcttttcAgcaccacaccacacctatcc	2	15	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45251529	G	G	45251529	1	3	62	0	1	0	0	0	0	0	0	0	15515	203	7	5		5	SUPT3H	6	45251529	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1135117	45251529	125863538	390	75594											
RCAN2	10231	broad.mit.edu	37	chr6	46263803	46263804	+	Intron	INS	-	GT	GT													gattacagtccaatagcttcINSgtgtgtgtgtgtgtgtgtgt					rs60947209		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	46263804	GT	GT	46263803	6	5	62	0	1	1	1	0	0	0	0	0	13277	899	31	0		0	RCAN2	6	46263803	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	1012274	46263803	124851264	391	75595											
CYP39A1	51302	broad.mit.edu	37	chr6	46619887	46619887	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacttaacttcgatgaagtAaaaatacgaaaagttaatct	6	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46619887	G	G	46619887	1	3	62	0	1	0	0	0	0	0	0	0	4210	377	13	5		5	CYP39A1	6	46619887	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	356084	46619887	124495180	392	75596											
CRISP2	7180	broad.mit.edu	37	chr6	49667525	49667525	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatttacatactggttttgCggtcctctggatcactatgt	8	8	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49667525	T	T	49667525	3	4	62	1	0	0	0	0	1	0	0	0	3912	768	27	4	488	4	CRISP2	6	49667525	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3047638	49667525	121447542	393	75597											
CRISP3	10321	broad.mit.edu	37	chr6	49705488	49705488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaactgtgtttattactGggatactactgcattagccc	7	10	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49705488	T	T	49705488	1	4	62	0	1	0	0	0	0	0	0	0	3913	1363	47	2		2	CRISP3	6	49705488	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	37963	49705488	121409579	394	75598											
PKHD1	5314	broad.mit.edu	37	chr6	51555128	51555128	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattatttttaaatgtacaTggaaccaaaaaagagatcga	6	4	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51555128	C	C	51555128	1	2	62	0	1	0	0	0	0	0	0	0	12066	1479	51	5		5	PKHD1	6	51555128	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1849640	51555128	119559939	395	75599											
PAQR8	85315	broad.mit.edu	37	chr6	52263706	52263706	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatctttgcaaccctctcaTtcctgagaggtaaggaatca	8	10	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52263706	A	A	52263706	1	1	62	0	1	0	0	0	0	0	0	0	11535	1508	52	5		5	PAQR8	6	52263706	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	708578	52263706	118851361	396	75600											
GSTA4	2941	broad.mit.edu	37	chr6	52858451	52858451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcatagagctgatgattGctgaagtcgggtgatgagta	14	4	0	6			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52858451	T	T	52858451	1	4	62	0	1	0	0	0	0	0	0	0	6899	1334	46	3		3	GSTA4	6	52858451	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	594745	52858451	118256616	397	75601											
C6orf142	90523	broad.mit.edu	37	chr6	54095182	54095182	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaagatgttcctaaccccAgcccacttcttttggatgga	8	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54095182	G	G	54095182	1	3	62	0	1	0	0	0	0	0	0	0	2356	203	7	5		5	C6orf142	6	54095182	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1236731	54095182	117019885	398	75602											
HMGCLL1	54511	broad.mit.edu	37	chr6	55348913	55348913	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagataggtagtcatgtaCctcttcttggagtattaaag	9	5	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55348913	G	G	55348913	1	3	62	0	1	0	0	0	0	0	0	0	7297	522	18	4		4	HMGCLL1	6	55348913	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1253731	55348913	115766154	399	75603											
PRIM2	5558	broad.mit.edu	37	chr6	57378096	57378096	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttatggttatatatcacTgcattttctagggtgaatta	7	5	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57378096	G	G	57378096	1	3	62	0	1	0	0	0	0	0	0	0	12597	1595	55	5		5	PRIM2	6	57378096	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2029183	57378096	113736971	400	75604											
PRIM2	5558	broad.mit.edu	37	chr6	57420035	57420035	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagtcacacaatttgctttCccagtgcatataaaactcaa	5	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57420035	T	T	57420035	1	4	62	0	1	0	0	0	0	0	0	0	12597	870	30	4		4	PRIM2	6	57420035	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	41939	57420035	113695032	401	75605											
EYS	346007	broad.mit.edu	37	chr6	65348783	65348783	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accacttgatgtgtttaacaGttccttggttgctttagtaa	8	7	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65348783	A	A	65348783	1	1	62	0	1	0	0	0	0	0	0	0	5375	1044	36	4		4	EYS	6	65348783	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7928748	65348783	105766284	402	75606											
BAI3	577	broad.mit.edu	37	chr6	69908639	69908639	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggagaggttagattttaTtttgactgtactaggaatcc	10	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69908639	C	C	69908639	1	2	62	0	1	0	0	0	0	0	0	0	1305	1508	52	5		5	BAI3	6	69908639	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4559856	69908639	101206428	403	75607											
SMAP1	60682	broad.mit.edu	37	chr6	71436602	71436602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtagaaa	19	0	0	1	rs71788683		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71436602	T	T	71436602	1	4	62	0	1	0	0	0	0	0	0	0	14880	1392	48	3		3	SMAP1	6	71436602	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1527963	71436602	99678465	404	75608											
ANKRD6	22881	broad.mit.edu	37	chr6	90322046	90322046	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccactcccagagcacgcGcgtcctcctgctggccgggt	12	18	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90322046	A	A	90322046	3	1	62	1	0	0	0	0	1	0	0	0	685	1087	38	4	491	4	ANKRD6	6	90322046	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	18885444	90322046	80793021	405	75609											
FUT9	10690	broad.mit.edu	37	chr6	96522189	96522189	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagcatttacaagcagagcTagaagaatagggtcttgcaa	10	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96522189	A	A	96522189	1	1	62	0	1	0	0	0	0	0	0	0	6171	1537	53	5		5	FUT9	6	96522189	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	6200143	96522189	74592878	406	75610											
GPR63	81491	broad.mit.edu	37	chr6	97267386	97267386	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaacatcacacactggggCctgtcggggtgcagggggac	18	10	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97267386	T	T	97267386	1	4	62	0	1	0	0	0	0	0	0	0	6769	754	26	4		4	GPR63	6	97267386	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	745197	97267386	73847681	407	75611											
C6orf167	253714	broad.mit.edu	37	chr6	97720972	97720972	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agacaatgttaatcatagttCaaataattatcatgggcagt	7	5	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97720972	T	T	97720972	1	4	62	0	1	0	0	0	0	0	0	0	2365	841	29	4		4	C6orf167	6	97720972	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	453586	97720972	73394095	408	75612											
ASCC3	10973	broad.mit.edu	37	chr6	101017081	101017081	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctgcatatgggctagCgagtttattgaatagggagt	12	5	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101017081	T	T	101017081	1	4	62	0	1	0	0	0	0	0	0	0	1037	783	27	4		4	ASCC3	6	101017081	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3296109	101017081	70097986	409	75613											
ASCC3	10973	broad.mit.edu	37	chr6	101326276	101326276	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatattcagaatattccccCccaaagttgtgttaatttta	4	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101326276	T	T	101326276	1	4	62	0	1	0	0	0	0	0	0	0	1037	638	22	4		4	ASCC3	6	101326276	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	309195	101326276	69788791	410	75614											
GRIK2	2898	broad.mit.edu	37	chr6	101994062	101994062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggaataacaataaacaCaagaaaattcttttctggac	6	7	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101994062	A	A	101994062	1	1	62	0	1	0	0	0	0	0	0	0	6840	493	17	3		3	GRIK2	6	101994062	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	667786	101994062	69121005	411	75615											
SMPD2	6610	broad.mit.edu	37	chr6	109763106	109763106	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atagctgatcagagctggaaGacaagggaggggaagaaggc	17	5	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109763106	C	C	109763106	1	2	62	0	1	0	0	0	0	0	0	0	14919	957	33	4		4	SMPD2	6	109763106	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7769044	109763106	61351961	412	75616											
AKD1	221264	broad.mit.edu	37	chr6	109859732	109859732	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatgggtctcctgaatacAgcacactgatgggtcttgac	12	9	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109859732	T	T	109859732	1	4	62	0	1	0	0	0	0	0	0	0	460	203	7	5		5	AKD1	6	109859732	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	96626	109859732	61255335	413	75617											
HEY2	23493	broad.mit.edu	37	chr6	126075725	126075725	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcatttttttttttttttGccttttttacctttctcttt	1	8	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126075725	A	A	126075725	1	1	62	0	1	0	0	0	0	0	0	0	7146	1334	46	4		4	HEY2	6	126075725	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	16215993	126075725	45039342	414	75618											
THEMIS	387357	broad.mit.edu	37	chr6	128129113	128129113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccttctgcctttttcaGccctcactctaattctggtg	5	14	5	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128129113	T	T	128129113	1	4	62	0	1	0	0	0	0	0	0	0	15983	986	34	3		3	THEMIS	6	128129113	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2053388	128129113	42985954	415	75619											
LAMA2	3908	broad.mit.edu	37	chr6	129637259	129637259	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacttcttggatatactatAtgatattcattacattctta	4	6	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129637259	G	G	129637259	3	3	62	1	0	0	0	0	1	0	0	0	8678	449	16	5	4107	5	LAMA2	6	129637259	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1508146	129637259	41477808	416	75620											
C6orf191	253582	broad.mit.edu	37	chr6	130161755	130161755	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactaaagagcttctgcacAgcaaaagaaactatcatcag	6	9	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130161755	C	C	130161755	1	2	62	0	1	0	0	0	0	0	0	0	2371	203	7	5		5	C6orf191	6	130161755	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	524496	130161755	40953312	417	75621											
L3MBTL3	84456	broad.mit.edu	37	chr6	130422825	130422825	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcagcctcctcctgtgcAgatcgttttgagggagtgtg	13	11	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130422825	G	G	130422825	1	3	62	0	1	0	0	0	0	0	0	0	8665	203	7	5		5	L3MBTL3	6	130422825	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	261070	130422825	40692242	418	75622											
ENPP3	5169	broad.mit.edu	37	chr6	131985271	131985271	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtttttcaggaggtatttCagaagaaggtactgttatca	11	4	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131985271	T	T	131985271	1	4	62	0	1	0	0	0	0	0	0	0	5173	841	29	4		4	ENPP3	6	131985271	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1562446	131985271	39129796	419	75623											
EYA4	2070	broad.mit.edu	37	chr6	133783355	133783355	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttcctatattgttaaaaTtatattgtggataaagagga	7	2	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133783355	A	A	133783355	1	1	62	0	1	0	0	0	0	0	0	0	5374	1508	52	5		5	EYA4	6	133783355	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1798084	133783355	37331712	420	75624											
AIG1	51390	broad.mit.edu	37	chr6	143501952	143501952	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccacccctcttcacacttGatttgtcagttgttcttgtt	5	14	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143501952	T	T	143501952	1	4	62	0	1	0	0	0	0	0	0	0	429	1305	45	3		3	AIG1	6	143501952	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	9718597	143501952	27613115	421	75625											
UTRN	7402	broad.mit.edu	37	chr6	144953945	144953945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctcactgcaacctccgCctcccgggttcaagcgattc	9	16	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144953945	A	A	144953945	1	1	62	0	1	0	0	0	0	0	0	0	17230	754	26	3		3	UTRN	6	144953945	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1451993	144953945	26161122	422	75626											
SYNE1	23345	broad.mit.edu	37	chr6	152887762	152887762	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaggcttagtgggattatCaacagagtgtggatgccaaa	12	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152887762	A	A	152887762	1	1	62	0	1	0	0	0	0	0	0	0	15564	841	29	3		3	SYNE1	6	152887762	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	7933817	152887762	18227305	423	75627											
OPRM1	4988	broad.mit.edu	37	chr6	154406799	154406799	+	Intron	DEL	G	-	-													tacaaagcagtaggcatggaGtaaggaaaaaggcttgtgtt							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154406799	-	-	154406799	6	5	62	0	1	1	0	1	0	0	0	0	10981	1044	36	0		0	OPRM1	6	154406799	Intron	DEL	G	TCGA-17-Z032-01A-01W-0746-08	1519037	154406799	16708268	424	75628											
IPCEF1	26034	broad.mit.edu	37	chr6	154579503	154579503	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagccaagaatgggaccCagccagtcagactcctaagc	10	13	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154579503	T	T	154579503	1	4	62	0	1	0	0	0	0	0	0	0	7861	609	21	4		4	IPCEF1	6	154579503	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	172704	154579503	16535564	425	75629											
SNX9	51429	broad.mit.edu	37	chr6	158347907	158347907	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacatggctgaattggttcAttctttaaagatttggtccc	9	7	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158347907	T	T	158347907	1	4	62	0	1	0	0	0	0	0	0	0	15023	232	8	5		5	SNX9	6	158347907	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	3768404	158347907	12767160	426	75630											
TMEM181	57583	broad.mit.edu	37	chr6	158988729	158988729	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catagaattgaagctctggaGttggatgcgcgggtttcagt	14	6	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158988729	C	C	158988729	1	2	62	0	1	0	0	0	0	0	0	0	16223	1044	36	4		4	TMEM181	6	158988729	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	640822	158988729	12126338	427	75631											
LPA	4018	broad.mit.edu	37	chr6	160978349	160978349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagcatggaaggcttctGcatcagtcagattttccatc	10	9	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160978349	T	T	160978349	1	4	62	0	1	0	0	0	0	0	0	0	8990	1334	46	3		3	LPA	6	160978349	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1989620	160978349	10136718	428	75632											
PACRG	135138	broad.mit.edu	37	chr6	163213821	163213821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgatgaccgactgtgaGcagcaggggcacagtgcaat	13	10	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163213821	T	T	163213821	1	4	62	0	1	0	0	0	0	0	0	0	11464	986	34	3		3	PACRG	6	163213821	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2235472	163213821	7901246	429	75633											
PDE10A	10846	broad.mit.edu	37	chr6	165754527	165754527	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacttttgcacaaattctaAaaggtaatggcaaggaattc	7	6	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165754527	G	G	165754527	1	3	62	0	1	0	0	0	0	0	0	0	11724	29	1	5		5	PDE10A	6	165754527	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2540706	165754527	5360540	430	75634											
UNC93A	54346	broad.mit.edu	37	chr6	167705029	167705029	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcctttgggttcctgcttCtctttacagcctatggaggt	9	10	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167705029	T	T	167705029	3	4	62	1	0	0	0	0	1	0	0	0	17122	913	32	4	54	4	UNC93A	6	167705029	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1950502	167705029	3410038	431	75635											
FAM120B	84498	broad.mit.edu	37	chr6	170686414	170686414	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgggagaacacaggctcaCgctgctcggtgctgtgcaca	13	14	1	1	rs151022433	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170686414	G	G	170686414	1	3	62	0	1	0	0	0	0	0	0	0	5463	551	19	4		4	FAM120B	6	170686414	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2981385	170686414	428653	432	75636											
CYTH3	9265	broad.mit.edu	37	chr7	6263836	6263836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcttcttaaacaaagaCaaagatgacctgaatgctat	6	8	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6263836	A	A	6263836	1	1	62	0	1	0	0	0	0	0	0	0	4238	493	17	3		3	CYTH3	7	6263836	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		6263836	152874827	433	75637											
TMEM195	392636	broad.mit.edu	37	chr7	15270342	15270342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagaaatctcaaagacaCttttccccactctgactcgg	7	12	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15270342	A	A	15270342	1	1	62	0	1	0	0	0	0	0	0	0	16240	580	20	3		3	TMEM195	7	15270342	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	9006506	15270342	143868321	434	75638											
HDAC9	9734	broad.mit.edu	37	chr7	18705897	18705897	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccttgaggaagcagaggAagagcttcagggggaccagg	16	8	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18705897	G	G	18705897	3	3	62	1	0	0	0	0	1	0	0	0	7081	246	9	5	1571	5	HDAC9	7	18705897	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	3435555	18705897	140432766	435	75639											
NPVF	64111	broad.mit.edu	37	chr7	25270203	25270203	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caccattgcactccagcctgGatgacagagcgagactctgt	10	13	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25270203	T	T	25270203	1	4	62	0	1	0	0	0	0	0	0	0	10700	1189	41	3		3	NPVF	7	25270203	5'Flank	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6564306	25270203	133868460	436	75640											
BBS9	27241	broad.mit.edu	37	chr7	33420040	33420040	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actattggcagagttccaagCctggaaggaattacctacct	9	10	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33420040	T	T	33420040	1	4	62	0	1	0	0	0	0	0	0	0	1347	754	26	4		4	BBS9	7	33420040	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8149837	33420040	125718623	437	75641											
DPY19L1	23333	broad.mit.edu	37	chr7	35013802	35013802	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaacctttctgaaaagctCactttggacataattaagca	5	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35013802	A	A	35013802	1	1	62	0	1	0	0	0	0	0	0	0	4780	841	29	3		3	DPY19L1	7	35013802	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1593762	35013802	124124861	438	75642											
ELMO1	9844	broad.mit.edu	37	chr7	37257366	37257366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctctctacatcaacctaaCggcgtcatcgccaccacaga	6	16	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37257366	A	A	37257366	1	1	62	0	1	0	0	0	0	0	0	0	5107	551	19	3		3	ELMO1	7	37257366	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2243564	37257366	121881297	439	75643											
POU6F2	11281	broad.mit.edu	37	chr7	39420324	39420324	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaaagtatgaaaagctgccGaagtgctgctcctgcctttt	10	10	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39420324	T	T	39420324	1	4	62	0	1	0	0	0	0	0	0	0	12381	1073	37	3		3	POU6F2	7	39420324	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2162958	39420324	119718339	440	75644											
C7orf10	79783	broad.mit.edu	37	chr7	40848231	40848231	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactggttggtggtaaggaaGaacattcctccaagggcctt	12	8	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40848231	T	T	40848231	1	4	62	0	1	0	0	0	0	0	0	0	2401	957	33	3		3	C7orf10	7	40848231	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1427907	40848231	118290432	441	75645											
GLI3	2737	broad.mit.edu	37	chr7	42224164	42224164	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaacagtgactgattttaGgaaaagcacaataaatgtga	9	4	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42224164	A	A	42224164	1	1	62	0	1	0	0	0	0	0	0	0	6503	1015	35	4		4	GLI3	7	42224164	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1375933	42224164	116914499	442	75646											
EGFR	1956	broad.mit.edu	37	chr7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-													aaaattcccgtcgctatcaaGgaattaagagaagcaacatc					rs121913421		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242479	-	-	55242465	7	5	62	1	0	1	0	1	0	0	0	0	5007	991	35	0	2573	0	EGFR	7	55242465	In_Frame_Del	DEL	GGAATTAAGAGAAGC	TCGA-17-Z032-01A-01W-0746-08	13018301	55242465	103896198	443	75647											
STAG3L4	64940	broad.mit.edu	37	chr7	66774772	66774772	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttctgccacagaccccctTatcaggccctgggcagtctt	8	16	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66774772	A	A	66774772	1	1	62	0	1	0	0	0	0	0	0	0	15365	1769	61	5		5	STAG3L4	7	66774772	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	11532307	66774772	92363891	444	75648											
CALN1	83698	broad.mit.edu	37	chr7	71428547	71428547	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgatccgcccaccttggcctCccaaagtgctgggattacag	10	14	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71428547	A	A	71428547	1	1	62	0	1	0	0	0	0	0	0	0	2617	870	30	3		3	CALN1	7	71428547	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4653775	71428547	87710116	445	75649											
RFC2	5982	broad.mit.edu	37	chr7	73266543	73266543	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccctccctccctcccttCcctgcttccctccttcccgc	2	26	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73266543	T	T	73266543	1	4	62	0	1	0	0	0	0	0	0	0	13353	870	30	4		4	RFC2	7	73266543	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1837996	73266543	85872120	446	75650											
MAGI2	9863	broad.mit.edu	37	chr7	77651404	77651404	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacacctcaggtatccttGgttaccttaaggaatagtct	8	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77651404	T	T	77651404	1	4	62	0	1	0	0	0	0	0	0	0	9283	1363	47	2		2	MAGI2	7	77651404	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4384861	77651404	81487259	447	75651											
KIAA1324L	222223	broad.mit.edu	37	chr7	86570977	86570977	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacaggcacatttgtaaaCttagaaactcaaatgttttg	7	6	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86570977	T	T	86570977	1	4	62	0	1	0	0	0	0	0	0	0	8294	580	20	4		4	KIAA1324L	7	86570977	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8919573	86570977	72567686	448	75652											
STEAP4	79689	broad.mit.edu	37	chr7	87930199	87930199	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaggctcctaagttctttAggaaaacagaatccttgtgg	9	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87930199	G	G	87930199	1	3	62	0	1	0	0	0	0	0	0	0	15398	435	15	5		5	STEAP4	7	87930199	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1359222	87930199	71208464	449	75653											
ZNF804B	219578	broad.mit.edu	37	chr7	88604713	88604713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttacattttcaccaacaGtgtactagggttcccttttt	6	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88604713	T	T	88604713	1	4	62	0	1	0	0	0	0	0	0	0	18300	1044	36	3		3	ZNF804B	7	88604713	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	674514	88604713	70533950	450	75654											
CDK14	5218	broad.mit.edu	37	chr7	90599885	90599885	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccctggattcaggagatGcagtttctgattctgctacc	10	10	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90599885	A	A	90599885	1	1	62	0	1	0	0	0	0	0	0	0	3160	1334	46	4		4	CDK14	7	90599885	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1995172	90599885	68538778	451	75655											
PPP1R9A	55607	broad.mit.edu	37	chr7	94805470	94805470	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatccatggctgagagacccAtagatggttcacatcacagg	10	10	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94805470	T	T	94805470	1	4	62	0	1	0	0	0	0	0	0	0	12479	232	8	5		5	PPP1R9A	7	94805470	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4205585	94805470	64333193	452	75656											
DYNC1I1	1780	broad.mit.edu	37	chr7	95510393	95510393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgaagaaatcaaagtaCtgaagataatgttaatgacc	8	5	2	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95510393	A	A	95510393	1	1	62	0	1	0	0	0	0	0	0	0	4882	580	20	3		3	DYNC1I1	7	95510393	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	704923	95510393	63628270	453	75657											
SLC25A13	10165	broad.mit.edu	37	chr7	95894781	95894781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctctagtagaagactagCtcaactagcaattcaaaaca	5	10	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95894781	A	A	95894781	1	1	62	0	1	0	0	0	0	0	0	0	14589	812	28	3		3	SLC25A13	7	95894781	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	384388	95894781	63243882	454	75658											
RELN	5649	broad.mit.edu	37	chr7	103418071	103418071	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgcccttccttcggtcaAcatcttgttgtttgctgggc	11	12	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103418071	G	G	103418071	1	3	62	0	1	0	0	0	0	0	0	0	13328	58	2	5		5	RELN	7	103418071	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	7523290	103418071	55720592	455	75659											
HBP1	26959	broad.mit.edu	37	chr7	106826354	106826354	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccttccctcatcaccaTtggaaggaggaaacaccagt	8	14	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106826354	C	C	106826354	2	2	62	1	0	0	0	0	0	0	0	1	7051	1490	52	5		5	HBP1	7	106826354	Silent	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3408283	106826354	52312309	456	75660											
LAMB1	3912	broad.mit.edu	37	chr7	107643342	107643342	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccccatgccggctccctGcagccacggggacgcggcag	14	17	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107643342	A	A	107643342	1	1	62	0	1	0	0	0	0	0	0	0	8682	1334	46	4		4	LAMB1	7	107643342	5'UTR	SNP	G	TCGA-17-Z032-01A-01W-0746-08	816988	107643342	51495321	457	75661											
IMMP2L	83943	broad.mit.edu	37	chr7	110466855	110466855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacatatgtaacaaacctgCacattgtgcacatgtaccct	5	11	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110466855	A	A	110466855	1	1	62	0	1	0	0	0	0	0	0	0	7787	725	25	3		3	IMMP2L	7	110466855	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2823513	110466855	48671808	458	75662											
KCND2	3751	broad.mit.edu	37	chr7	120373017	120373017	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttggttctatctgttcgctGagtggggtcttggtcattgc	13	7	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120373017	C	C	120373017	2	2	62	1	0	0	0	0	0	0	0	1	8089	1277	45	4		4	KCND2	7	120373017	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	9906162	120373017	38765646	459	75663											
C7orf58	79974	broad.mit.edu	37	chr7	120654797	120654797	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtaatttagattcccaAttgtgttttttaccaagtcc	6	8	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120654797	T	T	120654797	1	4	62	0	1	0	0	0	0	0	0	0	2430	116	4	5		5	C7orf58	7	120654797	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	281780	120654797	38483866	460	75664											
C7orf58	79974	broad.mit.edu	37	chr7	120710436	120710436	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgtggattctgtgggctCcttaatgcttctgtcattcc	9	11	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120710436	T	T	120710436	1	4	62	0	1	0	0	0	0	0	0	0	2430	870	30	4		4	C7orf58	7	120710436	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	55639	120710436	38428227	461	75665											
POT1	25913	broad.mit.edu	37	chr7	124511045	124511045	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttccactaaagagcaggcAagttagttttacatttgtct	8	7	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124511045	T	T	124511045	3	4	62	1	0	0	0	0	1	0	0	0	12355	130	5	5	1781	5	POT1	7	124511045	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	3800609	124511045	34627618	462	75666											
GRM8	2918	broad.mit.edu	37	chr7	126652244	126652244	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagcacctgcaactcctcAaatccacctgaagccaatcc	4	18	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126652244	C	C	126652244	1	2	62	0	1	0	0	0	0	0	0	0	6869	145	5	5		5	GRM8	7	126652244	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2141199	126652244	32486419	463	75667											
AKR1B1	231	broad.mit.edu	37	chr7	134133038	134133038	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctcaggggaagttttgcaGatcacccccagaaacatctt	10	11	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134133038	T	T	134133038	1	4	62	0	1	0	0	0	0	0	0	0	466	957	33	3		3	AKR1B1	7	134133038	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7480794	134133038	25005625	464	75668											
CHRM2	1129	broad.mit.edu	37	chr7	136551561	136551561	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tataatcacccagtgatggtGggatgtaagtatggaggttg	14	4	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136551561	A	A	136551561	1	1	62	0	1	0	0	0	0	0	0	0	3408	1363	47	4		4	CHRM2	7	136551561	5'Flank	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2418523	136551561	22587102	465	75669											
TBXAS1	6916	broad.mit.edu	37	chr7	139565518	139565518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaagaggaGgaggaggaggaagaggagga	25	0	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139565518	A	A	139565518	1	1	62	0	1	0	0	0	0	0	0	0	15786	1015	35	4		4	TBXAS1	7	139565518	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3013957	139565518	19573145	466	75670											
TRPV5	56302	broad.mit.edu	37	chr7	142622848	142622848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcgagcctggcatggaaGtagagtgaaacttggggtga	17	5	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142622848	T	T	142622848	1	4	62	0	1	0	0	0	0	0	0	0	16724	1044	36	3		3	TRPV5	7	142622848	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3057330	142622848	16515815	467	75671											
KEL	3792	broad.mit.edu	37	chr7	142641630	142641631	+	Intron	INS	-	G	G													tccctacttagcatgtgcctINSgggggggcctttggcatttg							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142641631	G	G	142641630	6	5	62	0	1	1	1	0	0	0	0	0	8212	1595	55	0		0	KEL	7	142641630	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	18782	142641630	16497033	468	75672											
OR2A12	346525	broad.mit.edu	37	chr7	143792758	143792758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatgtccgtattcaaattGgcctgtgctgacactaggct	9	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143792758	T	T	143792758	3	4	62	1	0	0	0	0	1	0	0	0	11069	1339	47	2	560	2	OR2A12	7	143792758	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1151128	143792758	15345905	469	75673											
CNTNAP2	26047	broad.mit.edu	37	chr7	146864812	146864812	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgggatgctgaaggagatGagtgggcttcggagtgaatg	19	3	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146864812	C	C	146864812	1	2	62	0	1	0	0	0	0	0	0	0	3679	1305	45	4		4	CNTNAP2	7	146864812	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3072054	146864812	12273851	470	75674											
CNTNAP2	26047	broad.mit.edu	37	chr7	147022351	147022351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgagccgagatcgcgcCactacactccagtctgggat	12	13	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147022351	A	A	147022351	1	1	62	0	1	0	0	0	0	0	0	0	3679	609	21	2		2	CNTNAP2	7	147022351	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	157539	147022351	12116312	471	75675											
CNTNAP2	26047	broad.mit.edu	37	chr7	147924959	147924959	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaatgttaggatgcctaAataaggaagagcacagcgtg	13	5	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147924959	C	C	147924959	1	2	62	0	1	0	0	0	0	0	0	0	3679	29	1	5		5	CNTNAP2	7	147924959	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	902608	147924959	11213704	472	75676											
CNTNAP2	26047	broad.mit.edu	37	chr7	148018295	148018295	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaggcagtggagagatgttGaatttttttttcaaacagtg	12	3	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148018295	T	T	148018295	1	4	62	0	1	0	0	0	0	0	0	0	3679	1305	45	3		3	CNTNAP2	7	148018295	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	93336	148018295	11120368	473	75677											
GIMAP5	55340	broad.mit.edu	37	chr7	150439289	150439289	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtagatcagaagataactTgtctgcaacaccaccggcat	9	10	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150439289	A	A	150439289	4	1	62	1	0	0	0	0	0	1	0	0	6446	1821	63	5	68	5	GIMAP5	7	150439289	Nonsense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2420994	150439289	8699374	474	75678											
MLL3	58508	broad.mit.edu	37	chr7	151954208	151954208	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataccaaagcacaggccaTtggttgagtaacccatagca	8	10	0	1	rs113276859		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151954208	C	C	151954208	1	2	62	0	1	0	0	0	0	0	0	0	9715	1508	52	5		5	MLL3	7	151954208	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1514919	151954208	7184455	475	75679											
MLL3	58508	broad.mit.edu	37	chr7	151954278	151954278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaggagaatgagatcTcttgaacttgcctaacttgc	8	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151954278	C	C	151954278	1	2	62	0	1	0	0	0	0	0	0	0	9715	1566	54	5		5	MLL3	7	151954278	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	70	151954278	7184385	476	75680											
DPP6	1804	broad.mit.edu	37	chr7	153584867	153584867	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtcggggggacccaccgtGaggagcgatgctgggggagg	23	8	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153584867	A	A	153584867	1	1	62	0	1	0	0	0	0	0	0	0	4770	1305	45	4		4	DPP6	7	153584867	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1630589	153584867	5553796	477	75681											
PAXIP1	22976	broad.mit.edu	37	chr7	154791282	154791282	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaaggaggaagatgtgaGagaatcggcaagccttggtg	16	5	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154791282	T	T	154791282	1	4	62	0	1	0	0	0	0	0	0	0	11581	957	33	3		3	PAXIP1	7	154791282	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1206415	154791282	4347381	478	75682											
RBM33	155435	broad.mit.edu	37	chr7	155458216	155458216	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtacagtaatgatactgacTttgtggacacccagaaccat	8	9	0	3	rs149331162	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155458216	C	C	155458216	1	2	62	0	1	0	0	0	0	0	0	0	13238	1624	56	5		5	RBM33	7	155458216	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	666934	155458216	3680447	479	75683											
UBE3C	9690	broad.mit.edu	37	chr7	156956491	156956494	+	Intron	DEL	TGTT	-	-													accttacctccttttttctcTgtttgggtgtaggaggaaaa							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156956494	-	-	156956491	6	5	62	0	1	1	0	1	0	0	0	0	17007	1595	55	0		0	UBE3C	7	156956491	Intron	DEL	TGTT	TCGA-17-Z032-01A-01W-0746-08	1498275	156956491	2182172	480	75684											
CSMD1	64478	broad.mit.edu	37	chr8	3263487	3263487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtttgttggtttgtgtGtgtgcctgaagatagatgtg	14	4	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3263487	T	T	3263487	1	4	62	0	1	0	0	0	0	0	0	0	3978	1392	48	3		3	CSMD1	8	3263487	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08		3263487	143100535	481	75685											
CSMD1	64478	broad.mit.edu	37	chr8	3266830	3266830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagtaaatgtggcacccCgagccattctgaaagctgcc	9	13	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3266830	A	A	3266830	1	1	62	0	1	0	0	0	0	0	0	0	3978	667	23	1		1	CSMD1	8	3266830	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3343	3266830	143097192	482	75686											
CSMD1	64478	broad.mit.edu	37	chr8	3488010	3488010	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcatgaaagatgcttagatGagaaggtccaatttatatgt	10	4	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3488010	T	T	3488010	1	4	62	0	1	0	0	0	0	0	0	0	3978	1305	45	3		3	CSMD1	8	3488010	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	221180	3488010	142876012	483	75687											
CSMD1	64478	broad.mit.edu	37	chr8	4232321	4232321	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctctaggatggcccaggaGaggatggcaggaaaacggcc	16	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4232321	T	T	4232321	1	4	62	0	1	0	0	0	0	0	0	0	3978	957	33	3		3	CSMD1	8	4232321	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	744311	4232321	142131701	484	75688											
SGCZ	137868	broad.mit.edu	37	chr8	14661143	14661143	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgagatcaaactgcaaggTggcagtgaggctgggggagg	18	6	2	2	rs113544407		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14661143	C	C	14661143	1	2	62	0	1	0	0	0	0	0	0	0	14317	1711	59	5		5	SGCZ	8	14661143	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	10428822	14661143	131702879	485	75689											
SGCZ	137868	broad.mit.edu	37	chr8	14719205	14719205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaattttctcctgcttgaaCaagtggtcttgcattttcat	7	9	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14719205	A	A	14719205	1	1	62	0	1	0	0	0	0	0	0	0	14317	493	17	3		3	SGCZ	8	14719205	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	58062	14719205	131644817	486	75690											
SGCZ	137868	broad.mit.edu	37	chr8	14725739	14725739	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaaaaacacagccacagAtgttgccctcatgcaactcg	8	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14725739	T	T	14725739	1	4	62	0	1	0	0	0	0	0	0	0	14317	348	12	5		5	SGCZ	8	14725739	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	6534	14725739	131638283	487	75691											
SGCZ	137868	broad.mit.edu	37	chr8	14909414	14909414	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaactggaaggagatagCacaatttgggcgcgccaaaa	12	7	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14909414	G	G	14909414	1	3	62	0	1	0	0	0	0	0	0	0	14317	725	25	4		4	SGCZ	8	14909414	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	183675	14909414	131454608	488	75692											
SCARA3	51435	broad.mit.edu	37	chr8	27507174	27507174	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaggggctgctggagAggcctgggatggctttgggt	18	5	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27507174	T	T	27507174	1	4	62	0	1	0	0	0	0	0	0	0	13991	319	11	5		5	SCARA3	8	27507174	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	12597760	27507174	118856848	489	75693											
ADAM2	2515	broad.mit.edu	37	chr8	39610878	39610878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagaagaaatttctaaGcagcaaagcattcaagagga	10	7	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39610878	T	T	39610878	1	4	62	0	1	0	0	0	0	0	0	0	241	986	34	3		3	ADAM2	8	39610878	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	12103704	39610878	106753144	490	75694											
IKBKB	3551	broad.mit.edu	37	chr8	42174363	42174363	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaccaggagctgctgcagGaagcgggcctggcgttgatc	17	10	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42174363	T	T	42174363	4	4	62	1	0	0	0	0	0	1	0	0	7681	1175	41	3	1104	3	IKBKB	8	42174363	Nonsense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2563485	42174363	104189659	491	75695											
SNTG1	54212	broad.mit.edu	37	chr8	50892481	50892481	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaattctatcctggtgaaaGagcttgctgttgaaaaacag	9	6	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50892481	C	C	50892481	1	2	62	0	1	0	0	0	0	0	0	0	14988	957	33	4		4	SNTG1	8	50892481	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	8718118	50892481	95471541	492	75696											
FAM110B	90362	broad.mit.edu	37	chr8	58978995	58978995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagctggggccagggctGctgcccatggcctttggagc	18	11	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58978995	T	T	58978995	1	4	62	0	1	0	0	0	0	0	0	0	5443	1334	46	3		3	FAM110B	8	58978995	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	8086514	58978995	87385027	493	75697											
FAM110B	90362	broad.mit.edu	37	chr8	58982054	58982054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtatgtatcacaggatttGgcttctagaagtagtttggc	11	6	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58982054	T	T	58982054	1	4	62	0	1	0	0	0	0	0	0	0	5443	1363	47	2		2	FAM110B	8	58982054	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3059	58982054	87381968	494	75698											
TOX	9760	broad.mit.edu	37	chr8	59811232	59811232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttgagtccaagttgtcCgttttcttcccaacccagtt	7	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59811232	A	A	59811232	1	1	62	0	1	0	0	0	0	0	0	0	16501	667	23	1		1	TOX	8	59811232	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	829178	59811232	86552790	495	75699											
TOX	9760	broad.mit.edu	37	chr8	59944690	59944690	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagcaggaatatcagaaatgGagaggaagagatggacccaa	14	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59944690	C	C	59944690	1	2	62	0	1	0	0	0	0	0	0	0	16501	1189	41	4		4	TOX	8	59944690	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	133458	59944690	86419332	496	75700											
ASPH	444	broad.mit.edu	37	chr8	62605678	62605678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctcagggaagtcttctaCaccccaagtccagccgtaac	8	14	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62605678	A	A	62605678	1	1	62	0	1	0	0	0	0	0	0	0	1057	493	17	3		3	ASPH	8	62605678	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2660988	62605678	83758344	497	75701											
NKAIN3	286183	broad.mit.edu	37	chr8	63890606	63890606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtatcaccagcagaggctGcagaacagcaaagattgctg	13	9	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63890606	T	T	63890606	1	4	62	0	1	0	0	0	0	0	0	0	10532	1334	46	3		3	NKAIN3	8	63890606	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1284928	63890606	82473416	498	75702											
PDE7A	5150	broad.mit.edu	37	chr8	66696463	66696463	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaggggcgaggggaatGgactagcaccatgggatatt	15	5	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66696463	A	A	66696463	1	1	62	0	1	0	0	0	0	0	0	0	11745	1363	47	4		4	PDE7A	8	66696463	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2805857	66696463	79667559	499	75703											
PREX2	80243	broad.mit.edu	37	chr8	69016105	69016105	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtaaagctccaggactcagGactccatcttctccttttct	7	13	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69016105	T	T	69016105	1	4	62	0	1	0	0	0	0	0	0	0	12583	1189	41	3		3	PREX2	8	69016105	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2319642	69016105	77347917	500	75704											
PREX2	80243	broad.mit.edu	37	chr8	69136603	69136603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaataaagacaaagcaaCataacagcacatttttatta	5	6	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69136603	A	A	69136603	1	1	62	0	1	0	0	0	0	0	0	0	12583	493	17	3		3	PREX2	8	69136603	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	120498	69136603	77227419	501	75705											
PRDM14	63978	broad.mit.edu	37	chr8	70978723	70978723	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatctataaagtggctcaaAtgaccatcttcaaagatcta	5	10	5	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70978723	T	T	70978723	3	4	62	1	0	0	0	0	1	0	0	0	12561	98	4	5	801	5	PRDM14	8	70978723	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1842120	70978723	75385299	502	75706											
KCNB2	9312	broad.mit.edu	37	chr8	73484734	73484734	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatttcctcattaatctgTagccaccacttcctccctcc	2	17	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73484734	C	C	73484734	1	2	62	0	1	0	0	0	0	0	0	0	8083	1653	57	5		5	KCNB2	8	73484734	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2506011	73484734	72879288	503	75707											
STAU2	27067	broad.mit.edu	37	chr8	74531656	74531656	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcctaaaaaatgtttgTttccaagcaaaaagaagtcc	6	9	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74531656	C	C	74531656	1	2	62	0	1	0	0	0	0	0	0	0	15391	1740	60	5		5	STAU2	8	74531656	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1046922	74531656	71832366	504	75708											
RALYL	138046	broad.mit.edu	37	chr8	85280766	85280766	+	Intron	DEL	G	-	-													agactggccaatttacaaaaGaaagaggtttaatggactca							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85280766	-	-	85280766	6	5	62	0	1	1	0	1	0	0	0	0	13128	957	33	0		0	RALYL	8	85280766	Intron	DEL	G	TCGA-17-Z032-01A-01W-0746-08	10749110	85280766	61083256	505	75709											
SLC26A7	115111	broad.mit.edu	37	chr8	92314871	92314871	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacagatgtatatattcatGaacccatcatcaagacaata	5	8	3	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92314871	C	C	92314871	1	2	62	0	1	0	0	0	0	0	0	0	14636	1305	45	4		4	SLC26A7	8	92314871	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7034105	92314871	54049151	506	75710											
INTS8	55656	broad.mit.edu	37	chr8	95856798	95856798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtgatccacccactttaGcctcccaaagtcctgggatt	7	14	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95856798	T	T	95856798	1	4	62	0	1	0	0	0	0	0	0	0	7854	986	34	3		3	INTS8	8	95856798	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3541927	95856798	50507224	507	75711											
PGCP	10404	broad.mit.edu	37	chr8	97721537	97721537	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgtatgcctttgcatacCtacagcttagctcccactta	6	13	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97721537	T	T	97721537	1	4	62	0	1	0	0	0	0	0	0	0	11881	696	24	4		4	PGCP	8	97721537	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1864739	97721537	48642485	508	75712											
PGCP	10404	broad.mit.edu	37	chr8	98073916	98073916	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctggctcgtaggaaacatCacagaaatgctgcctagcat	10	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98073916	T	T	98073916	1	4	62	0	1	0	0	0	0	0	0	0	11881	841	29	4		4	PGCP	8	98073916	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	352379	98073916	48290106	509	75713											
NIPAL2	79815	broad.mit.edu	37	chr8	99266175	99266175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacaaagacaaaagtgcCcaatgcccatgagagtcata	8	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99266175	A	A	99266175	1	1	62	0	1	0	0	0	0	0	0	0	10520	638	22	2		2	NIPAL2	8	99266175	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1192259	99266175	47097847	510	75714											
ZFPM2	23414	broad.mit.edu	37	chr8	106365650	106365650	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcaactgaaataagaacaCtacacaggcaaggatttttg	7	8	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106365650	G	G	106365650	1	3	62	0	1	0	0	0	0	0	0	0	17784	580	20	4		4	ZFPM2	8	106365650	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	7099475	106365650	39998372	511	75715											
ZFPM2	23414	broad.mit.edu	37	chr8	106814178	106814178	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaatccacttcttcaaaCatcttgcatcaattcttcca	3	12	5	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106814178	T	T	106814178	3	4	62	1	0	0	0	0	1	0	0	0	17784	478	17	4	1898	4	ZFPM2	8	106814178	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	448528	106814178	39549844	512	75716											
CSMD3	114788	broad.mit.edu	37	chr8	113256648	113256648	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caaatgggaacttttccagtCcaggtgttatcggatctaca	9	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113256648	G	G	113256648	3	3	62	1	0	0	0	0	1	0	0	0	3980	856	30	4	774	4	CSMD3	8	113256648	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	6442470	113256648	33107374	513	75717											
CSMD3	114788	broad.mit.edu	37	chr8	113259903	113259903	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagggtatagtaattaggaGaatatctaggacaatggctt	11	3	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113259903	A	A	113259903	1	1	62	0	1	0	0	0	0	0	0	0	3980	957	33	4		4	CSMD3	8	113259903	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3255	113259903	33104119	514	75718											
CSMD3	114788	broad.mit.edu	37	chr8	113358405	113358405	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaacccaggactgaggatCacaccactgaagtctgacat	10	11	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113358405	A	A	113358405	2	1	62	1	0	0	0	0	0	0	0	1	3980	813	29	3		3	CSMD3	8	113358405	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	98502	113358405	33005617	515	75719											
CSMD3	114788	broad.mit.edu	37	chr8	113521639	113521639	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctagatgtctttatatggtCctttctacctctcattctct	4	11	5	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113521639	T	T	113521639	1	4	62	0	1	0	0	0	0	0	0	0	3980	870	30	4		4	CSMD3	8	113521639	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	163234	113521639	32842383	516	75720											
CSMD3	114788	broad.mit.edu	37	chr8	114355163	114355163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaatagaaaaatgcaaccCatagttgaagaagataatta	6	5	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114355163	A	A	114355163	1	1	62	0	1	0	0	0	0	0	0	0	3980	609	21	2		2	CSMD3	8	114355163	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	833524	114355163	32008859	517	75721											
TRPS1	7227	broad.mit.edu	37	chr8	116599202	116599202	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcccttcaaaacaaatgaAttatttaaaaatgaaaccat	3	7	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116599202	C	C	116599202	1	2	62	0	1	0	0	0	0	0	0	0	16718	116	4	5		5	TRPS1	8	116599202	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2244039	116599202	29764820	518	75722											
EIF3H	8667	broad.mit.edu	37	chr8	117768021	117768022	+	Nonsense_Mutation	DNP	CC	AT	AT													ggcagtagagccggtaccttCcttgcgggacgccatctttc							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	117768022	AT	AT	117768021	4	1	62	1	0	0	0	0	0	1	0	0	5060	864	30	3	1074	3	EIF3H	8	117768021	Nonsense_Mutation	DNP	CC	TCGA-17-Z032-01A-01W-0746-08	1168819	117768021	28596001	519	75723											
MTBP	27085	broad.mit.edu	37	chr8	121471615	121471615	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtgtttaatttttttgtgtGatcattcatgtgtatttttg	8	3	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121471615	A	A	121471615	1	1	62	0	1	0	0	0	0	0	0	0	10006	1305	45	4		4	MTBP	8	121471615	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3703594	121471615	24892407	520	75724											
ADCY8	114	broad.mit.edu	37	chr8	131972549	131972549	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggactgggaaagaaaaatGacccaagcatgtactgctta	10	8	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131972549	C	C	131972549	1	2	62	0	1	0	0	0	0	0	0	0	300	1305	45	4		4	ADCY8	8	131972549	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	10500934	131972549	14391473	521	75725											
KCNQ3	3786	broad.mit.edu	37	chr8	133260299	133260299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgccaggaagtggcagaGctaggattcaaacccaggtg	14	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133260299	T	T	133260299	1	4	62	0	1	0	0	0	0	0	0	0	8154	986	34	3		3	KCNQ3	8	133260299	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1287750	133260299	13103723	522	75726											
TG	7038	broad.mit.edu	37	chr8	134029752	134029752	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctggtaaagggtcctgGgcctggatccatgtatagaa	15	7	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134029752	T	T	134029752	1	4	62	0	1	0	0	0	0	0	0	0	15936	1247	43	2		2	TG	8	134029752	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	769453	134029752	12334270	523	75727											
ZFAT	57623	broad.mit.edu	37	chr8	135660211	135660211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggaatctaaggtaaagCatgatgactataactaacaa	8	7	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135660211	A	A	135660211	1	1	62	0	1	0	0	0	0	0	0	0	17758	725	25	3		3	ZFAT	8	135660211	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1630459	135660211	10703811	524	75728											
DOCK8	81704	broad.mit.edu	37	chr9	348137	348137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgaccttagacatctGgcatttttttggaaggtgta	10	7	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348137	T	T	348137	1	4	62	0	1	0	0	0	0	0	0	0	4733	1363	47	2		2	DOCK8	9	348137	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08		348137	140865294	525	75729											
DMRT1	1761	broad.mit.edu	37	chr9	925065	925065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggcctacctcagggaGgtcacacttactcatgtaag	11	12	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	925065	T	T	925065	1	4	62	0	1	0	0	0	0	0	0	0	4625	1015	35	2		2	DMRT1	9	925065	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	576928	925065	140288366	526	75730											
PTPRD	5789	broad.mit.edu	37	chr9	9030872	9030872	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttccatacttaaatctaaGatccttgaggaccttagatt	5	8	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9030872	T	T	9030872	1	4	62	0	1	0	0	0	0	0	0	0	12907	957	33	3		3	PTPRD	9	9030872	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	8105807	9030872	132182559	527	75731											
PTPRD	5789	broad.mit.edu	37	chr9	9111979	9111979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaaatgggggtccaggcCattgccatggggagtccagg	16	9	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9111979	A	A	9111979	1	1	62	0	1	0	0	0	0	0	0	0	12907	609	21	2		2	PTPRD	9	9111979	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	81107	9111979	132101452	528	75732											
FREM1	158326	broad.mit.edu	37	chr9	14859371	14859371	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcgcttgggacaagccattGaattcaggcacctccagcac	9	13	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14859371	A	A	14859371	2	1	62	1	0	0	0	0	0	0	0	1	6104	1281	45	4		4	FREM1	9	14859371	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5747392	14859371	126354060	529	75733											
LINGO2	158038	broad.mit.edu	37	chr9	27963561	27963561	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttagcctggaaattctAtgattaatttagttctctga	7	6	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27963561	G	G	27963561	1	3	62	0	1	0	0	0	0	0	0	0	8888	464	16	5		5	LINGO2	9	27963561	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	13104190	27963561	113249870	530	75734											
ZNF658	26149	broad.mit.edu	37	chr9	40796310	40796310	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagacagaatcttgctctgtCgcccaggctggagtgcagtg	14	10	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40796310	T	T	40796310	1	4	62	0	1	0	0	0	0	0	0	0	18196	899	31	4		4	ZNF658	9	40796310	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	12832749	40796310	100417121	531	75735											
PIP5K1B	8395	broad.mit.edu	37	chr9	71493765	71493765	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgtggttttaaccatgccTtaaaaactacgagggatttt	9	6	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71493765	A	A	71493765	1	1	62	0	1	0	0	0	0	0	0	0	12035	1624	56	5		5	PIP5K1B	9	71493765	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	30697455	71493765	69719666	532	75736											
TRPM3	80036	broad.mit.edu	37	chr9	73915848	73915848	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgccttaagtagcaccttGaaatttgattcagtgtgatt	8	6	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73915848	C	C	73915848	1	2	62	0	1	0	0	0	0	0	0	0	16712	1305	45	4		4	TRPM3	9	73915848	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2422083	73915848	67297583	533	75737											
TMC1	117531	broad.mit.edu	37	chr9	75279748	75279748	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaacctgggtaccaagaGggcactgagctggttaacac	12	10	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75279748	A	A	75279748	1	1	62	0	1	0	0	0	0	0	0	0	16107	1015	35	4		4	TMC1	9	75279748	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1363900	75279748	65933683	534	75738											
C9orf41	138199	broad.mit.edu	37	chr9	77598775	77598775	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatgttgacaatacagattCtttttccacctgcaatgcaa	5	9	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77598775	A	A	77598775	4	1	62	1	0	0	0	0	0	1	0	0	2508	922	32	3	95	3	C9orf41	9	77598775	Nonsense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2319027	77598775	63614656	535	75739											
PRUNE2	158471	broad.mit.edu	37	chr9	79508829	79508829	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatgatcagtcacagggcCacgaaaattgctttgcttca	8	11	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79508829	T	T	79508829	1	4	62	0	1	0	0	0	0	0	0	0	12747	609	21	4		4	PRUNE2	9	79508829	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1910054	79508829	61704602	536	75740											
FLJ46321	389763	broad.mit.edu	37	chr9	84609298	84609298	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacccaaaggaggagagcttGatggaggggatgcagggctg	19	6	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84609298	T	T	84609298	3	4	62	1	0	0	0	0	1	0	0	0	5990	1290	45	3	3927	3	FLJ46321	9	84609298	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5100469	84609298	56604133	537	75741											
NAA35	60560	broad.mit.edu	37	chr9	88608840	88608840	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaagctgtcctcccatctCagcctccccagtagccagga	7	18	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88608840	G	G	88608840	1	3	62	0	1	0	0	0	0	0	0	0	10217	841	29	4		4	NAA35	9	88608840	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3999542	88608840	52604591	538	75742											
ROR2	4920	broad.mit.edu	37	chr9	94544782	94544782	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaggggtgtccaatctTttggcttccctgggccacac	10	12	2	0	rs74483489	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94544782	G	G	94544782	1	3	62	0	1	0	0	0	0	0	0	0	13638	1856	64	5		5	ROR2	9	94544782	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	5935942	94544782	46668649	539	75743											
ASPN	54829	broad.mit.edu	37	chr9	95229653	95229653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacccaaactgggaatgtcCtaggcaaactgggacatgtt	11	9	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95229653	A	A	95229653	1	1	62	0	1	0	0	0	0	0	0	0	1061	696	24	2		2	ASPN	9	95229653	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	684871	95229653	45983778	540	75744											
TMEFF1	8577	broad.mit.edu	37	chr9	103274779	103274779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggtatcctctcccctGgcaagtgctagataaagcat	9	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103274779	T	T	103274779	1	4	62	0	1	0	0	0	0	0	0	0	16136	1363	47	2		2	TMEFF1	9	103274779	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	8045126	103274779	37938652	541	75745											
SLC44A1	23446	broad.mit.edu	37	chr9	108169174	108169174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaatcaagagaacaatGttttacctaatagaagacat	6	5	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108169174	T	T	108169174	1	4	62	0	1	0	0	0	0	0	0	0	14749	1392	48	3		3	SLC44A1	9	108169174	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4894395	108169174	33044257	542	75746											
AKNA	80709	broad.mit.edu	37	chr9	117131053	117131053	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcatgccttttcatttactCttaatggcagtcctgaaagg	8	9	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117131053	G	G	117131053	1	3	62	0	1	0	0	0	0	0	0	0	463	928	32	4		4	AKNA	9	117131053	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8961879	117131053	24082378	543	75747											
PAPPA	5069	broad.mit.edu	37	chr9	119086489	119086489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatggttaagaatgtgggCtaaacttgtgcctggatttc	11	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119086489	A	A	119086489	1	1	62	0	1	0	0	0	0	0	0	0	11526	812	28	3		3	PAPPA	9	119086489	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1955436	119086489	22126942	544	75748											
ASTN2	23245	broad.mit.edu	37	chr9	119294713	119294713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagatatgaggtccttgCccatgcctatgtcctgaatg	9	9	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119294713	A	A	119294713	1	1	62	0	1	0	0	0	0	0	0	0	1069	754	26	3		3	ASTN2	9	119294713	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	208224	119294713	21918718	545	75749											
ASTN2	23245	broad.mit.edu	37	chr9	119988953	119988953	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttctaacttcattaacaGatgacaaaagtgagcctttc	5	9	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119988953	T	T	119988953	1	4	62	0	1	0	0	0	0	0	0	0	1069	957	33	3		3	ASTN2	9	119988953	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	694240	119988953	21224478	546	75750											
DBC1	1620	broad.mit.edu	37	chr9	121994743	121994743	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgcatctagagtaaaatctGatataaagtttttgccatgt	7	5	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121994743	A	A	121994743	1	1	62	0	1	0	0	0	0	0	0	0	4280	1305	45	4		4	DBC1	9	121994743	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2005790	121994743	19218688	547	75751											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123167373	123167373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggctgactgcactccaGcatttcccaggggtgtgcta	14	11	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123167373	T	T	123167373	1	4	62	0	1	0	0	0	0	0	0	0	3176	986	34	3		3	CDK5RAP2	9	123167373	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1172630	123167373	18046058	548	75752											
DENND1A	57706	broad.mit.edu	37	chr9	126380663	126380663	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagccaggctccaaatcaggGaggaatgaggaatgtgtcac	13	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126380663	T	T	126380663	1	4	62	0	1	0	0	0	0	0	0	0	4466	1189	41	3		3	DENND1A	9	126380663	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3213290	126380663	14832768	549	75753											
MAPKAP1	79109	broad.mit.edu	37	chr9	128391334	128391335	+	Intron	DEL	AC	-	-													ttaggatggtcactgtcaaaAcacacacacacacacacaca							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128391335	-	-	128391334	6	5	62	0	1	1	0	1	0	0	0	0	9380	58	2	0		0	MAPKAP1	9	128391334	Intron	DEL	AC	TCGA-17-Z032-01A-01W-0746-08	2010671	128391334	12822097	550	75754											
OBP2A	29991	broad.mit.edu	37	chr9	138440414	138440414	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatctcttctgtccccagCcccacccctgagctctgatc	6	20	3	2	rs114220148	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138440414	T	T	138440414	1	4	62	0	1	0	0	0	0	0	0	0	10905	754	26	4		4	OBP2A	9	138440414	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	10049080	138440414	2773017	551	75755											
NET1	10276	broad.mit.edu	37	chr10	5475343	5475343	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtaaacactgcagtatcTgggctgagcagttgtgacag	12	8	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5475343	C	C	5475343	1	2	62	0	1	0	0	0	0	0	0	0	10433	1595	55	5		5	NET1	10	5475343	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08		5475343	130059404	552	75756											
SFMBT2	57713	broad.mit.edu	37	chr10	7366638	7366638	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagaaaagcatagactggGtgtcttaaacagaaacgtat	9	6	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7366638	A	A	7366638	1	1	62	0	1	0	0	0	0	0	0	0	14271	1276	44	4		4	SFMBT2	10	7366638	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1891295	7366638	128168109	553	75757											
TAF3	83860	broad.mit.edu	37	chr10	7988406	7988406	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatttaagaaggtggtggGccaggcaccatggctcatgc	13	9	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7988406	A	A	7988406	1	1	62	0	1	0	0	0	0	0	0	0	15644	1218	42	4		4	TAF3	10	7988406	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	621768	7988406	127546341	554	75758											
USP6NL	9712	broad.mit.edu	37	chr10	11588726	11588726	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttcagttggctttctgttCttctacaaatctaagcacat	5	11	5	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11588726	T	T	11588726	1	4	62	0	1	0	0	0	0	0	0	0	17214	928	32	4		4	USP6NL	10	11588726	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3600320	11588726	123946021	555	75759											
DHTKD1	55526	broad.mit.edu	37	chr10	12136103	12136103	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctgtgccatcatccatgtCaatggagacagcccagagga	12	11	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12136103	T	T	12136103	2	4	62	1	0	0	0	0	0	0	0	1	4540	813	29	4		4	DHTKD1	10	12136103	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	547377	12136103	123398644	556	75760											
CAMK1D	57118	broad.mit.edu	37	chr10	12747241	12747241	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctgaggcaggcagatcaCctgaggtcaggagtttgaga	16	7	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12747241	G	G	12747241	1	3	62	0	1	0	0	0	0	0	0	0	2623	522	18	4		4	CAMK1D	10	12747241	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	611138	12747241	122787506	557	75761											
FAM107B	83641	broad.mit.edu	37	chr10	14634607	14634607	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatatataattgaggcataaCttgcataaagtgcatgcatt	7	5	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14634607	G	G	14634607	1	3	62	0	1	0	0	0	0	0	0	0	5436	580	20	4		4	FAM107B	10	14634607	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1887366	14634607	120900140	558	75762											
NEBL	10529	broad.mit.edu	37	chr10	21450355	21450355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaagaactcaccatgcCcccaacaaagctagatgggc	8	14	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21450355	A	A	21450355	1	1	62	0	1	0	0	0	0	0	0	0	10398	638	22	2		2	NEBL	10	21450355	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	6815748	21450355	114084392	559	75763											
SPAG6	9576	broad.mit.edu	37	chr10	22675916	22675916	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataaggttgaaaaatacAtcagccttcttataatgtaa	5	5	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22675916	G	G	22675916	1	3	62	0	1	0	0	0	0	0	0	0	15098	232	8	5		5	SPAG6	10	22675916	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1225561	22675916	112858831	560	75764											
KIAA1217	56243	broad.mit.edu	37	chr10	24139801	24139801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagaaaaggaagaagagaGtgaaggggaatgtgctacac	15	4	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24139801	A	A	24139801	1	1	62	0	1	0	0	0	0	0	0	0	8286	1044	36	4		4	KIAA1217	10	24139801	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1463885	24139801	111394946	561	75765											
ARHGAP21	57584	broad.mit.edu	37	chr10	24886990	24886990	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaaacataaataagtgatCcttacttttttgaggctttc	5	7	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24886990	A	A	24886990	1	1	62	0	1	0	0	0	0	0	0	0	873	870	30	3		3	ARHGAP21	10	24886990	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	747189	24886990	110647757	562	75766											
ARHGAP12	94134	broad.mit.edu	37	chr10	32185034	32185034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggggtggggggagcggGgagggatagcattaggagat	23	2	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32185034	T	T	32185034	1	4	62	0	1	0	0	0	0	0	0	0	867	1247	43	2		2	ARHGAP12	10	32185034	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7298044	32185034	103349713	563	75767											
C10orf71	118461	broad.mit.edu	37	chr10	50532115	50532115	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcaaggacgtgcggaagCgtgttaagagcacatacagt	12	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50532115	T	T	50532115	3	4	62	1	0	0	0	0	1	0	0	0	1625	768	27	4	1527	4	C10orf71	10	50532115	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	18347081	50532115	85002632	564	75768											
PCDH15	65217	broad.mit.edu	37	chr10	56287656	56287656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctaaagagagaaaataacCaaaagtaataattgactgca	6	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56287656	A	A	56287656	1	1	62	0	1	0	0	0	0	0	0	0	11605	609	21	2		2	PCDH15	10	56287656	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5755541	56287656	79247091	565	75769											
PCDH15	65217	broad.mit.edu	37	chr10	57165962	57165962	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaagcatacgatcctgTatgcatgagaggactgtagc	10	7	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57165962	G	G	57165962	1	3	62	0	1	0	0	0	0	0	0	0	11605	1653	57	5		5	PCDH15	10	57165962	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	878306	57165962	78368785	566	75770											
IPMK	253430	broad.mit.edu	37	chr10	59984912	59984912	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatttttcctctcttcactCagcttcctcacttcatcctc	1	17	5	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59984912	A	A	59984912	1	1	62	0	1	0	0	0	0	0	0	0	7862	841	29	3		3	IPMK	10	59984912	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2818950	59984912	75549835	567	75771											
ZNF365	22891	broad.mit.edu	37	chr10	64174676	64174676	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgcttcagtttgaataTtttctattgaccattcttct	5	8	5	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64174676	A	A	64174676	1	1	62	0	1	0	0	0	0	0	0	0	17995	1508	52	5		5	ZNF365	10	64174676	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4189764	64174676	71360071	568	75772											
CTNNA3	29119	broad.mit.edu	37	chr10	68537553	68537553	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacAcatgcacacacacacacaca	1	19	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68537553	G	G	68537553	1	3	62	0	1	0	0	0	0	0	0	0	4048	174	6	5		5	CTNNA3	10	68537553	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4362877	68537553	66997194	569	75773											
CTNNA3	29119	broad.mit.edu	37	chr10	68803262	68803262	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagctcttccaatttcttCtagtatagggtttatttcaa	5	7	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68803262	A	A	68803262	1	1	62	0	1	0	0	0	0	0	0	0	4048	928	32	3		3	CTNNA3	10	68803262	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	265709	68803262	66731485	570	75774											
TET1	80312	broad.mit.edu	37	chr10	70446350	70446350	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagggctgcgatgatgacaGaggttcttgcacataagata	13	6	1	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70446350	A	A	70446350	3	1	62	1	0	0	0	0	1	0	0	0	15891	943	33	4	5328	4	TET1	10	70446350	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1643088	70446350	65088397	571	75775											
COL13A1	1305	broad.mit.edu	37	chr10	71570318	71570318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaagcagcaggctttttGctgttgttttccaaaaacaa	10	8	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71570318	T	T	71570318	1	4	62	0	1	0	0	0	0	0	0	0	3702	1334	46	3		3	COL13A1	10	71570318	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1123968	71570318	63964429	572	75776											
C10orf11	83938	broad.mit.edu	37	chr10	78110941	78110941	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagagcatgtaggaaatGcagaatgaaggatgcagctc	14	6	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78110941	A	A	78110941	1	1	62	0	1	0	0	0	0	0	0	0	1593	1334	46	4		4	C10orf11	10	78110941	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6540623	78110941	57423806	573	75777											
C10orf11	83938	broad.mit.edu	37	chr10	78191798	78191798	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcaggtatgtctttatcaGcagtgtgaaaatggactaat	9	6	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78191798	A	A	78191798	1	1	62	0	1	0	0	0	0	0	0	0	1593	986	34	4		4	C10orf11	10	78191798	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	80857	78191798	57342949	574	75778											
DLG5	9231	broad.mit.edu	37	chr10	79572163	79572163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtcaaaagtttcggggaCtcagggtcaaacaaaagggt	12	6	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79572163	A	A	79572163	1	1	62	0	1	0	0	0	0	0	0	0	4598	580	20	3		3	DLG5	10	79572163	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1380365	79572163	55962584	575	75779											
PTEN	5728	broad.mit.edu	37	chr10	89711906	89711906	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccagtcagaggcgctatgTgtattattatagctacctgt	9	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89711906	A	A	89711906	3	1	62	1	0	0	0	0	1	0	0	0	12844	1696	59	5	546	5	PTEN	10	89711906	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	10139743	89711906	45822841	576	75780											
ACTA2	59	broad.mit.edu	37	chr10	90746436	90746436	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatacaggaaggaagtagtGcaggaaggaagtagtgcagg	16	3	0	0	rs111675393		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90746436	A	A	90746436	1	1	62	0	1	0	0	0	0	0	0	0	192	1334	46	4		4	ACTA2	10	90746436	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1034530	90746436	44788311	577	75781											
CYP2C18	1562	broad.mit.edu	37	chr10	96457411	96457411	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaccttaaatgtaaatgggTtaaatgctccaattaaaaga	6	5	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96457411	C	C	96457411	1	2	62	0	1	0	0	0	0	0	0	0	4198	1740	60	5		5	CYP2C18	10	96457411	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	5710975	96457411	39077336	578	75782											
CYP2C19	1557	broad.mit.edu	37	chr10	96556872	96556872	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcccattcagtatgatAttggctgtgcatttgtcata	8	7	2	1	rs144109353		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96556872	T	T	96556872	1	4	62	0	1	0	0	0	0	0	0	0	4199	464	16	5		5	CYP2C19	10	96556872	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	99461	96556872	38977875	579	75783											
CYP2C19	1557	broad.mit.edu	37	chr10	96602692	96602692	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acacagatgctgtggtgcacGaggtccagagatacatcgac	12	10	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96602692	A	A	96602692	3	1	62	1	0	0	0	0	1	0	0	0	4199	1059	37	4	1086	4	CYP2C19	10	96602692	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	45820	96602692	38932055	580	75784											
ENTPD1	953	broad.mit.edu	37	chr10	97562321	97562321	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttgctgcacccatcaactCatcattcacattaggtattt	5	11	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97562321	A	A	97562321	1	1	62	0	1	0	0	0	0	0	0	0	5180	841	29	3		3	ENTPD1	10	97562321	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	959629	97562321	37972426	581	75785											
TM9SF3	56889	broad.mit.edu	37	chr10	98311207	98311207	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagagagagaaaagcaaatCattcagaatcaaactaaaac	6	6	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98311207	A	A	98311207	1	1	62	0	1	0	0	0	0	0	0	0	16102	841	29	3		3	TM9SF3	10	98311207	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	748886	98311207	37223540	582	75786											
C10orf28	27291	broad.mit.edu	37	chr10	99955150	99955150	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catacaacaatatgcatataGttaaaatactgtgctataca	4	7	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99955150	C	C	99955150	1	2	62	0	1	0	0	0	0	0	0	0	1612	1044	36	4		4	C10orf28	10	99955150	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1643943	99955150	35579597	583	75787											
C10orf79	80217	broad.mit.edu	37	chr10	105970796	105970796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacctcgtgatccacccGtctcggcctcccaaaggaaa	8	17	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105970796	T	T	105970796	1	4	62	0	1	0	0	0	0	0	0	0	1629	1160	40	3		3	C10orf79	10	105970796	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6015646	105970796	29563951	584	75788											
TCF7L2	6934	broad.mit.edu	37	chr10	114894246	114894246	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttggggacaggggggttaCcttaactgactgttcaccac	13	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114894246	G	G	114894246	1	3	62	0	1	0	0	0	0	0	0	0	15820	522	18	4		4	TCF7L2	10	114894246	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8923450	114894246	20640501	585	75789											
CASP7	840	broad.mit.edu	37	chr10	115438691	115438691	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgggaatccgtgtgtgtGtgtgtttggtcagggtgaac	17	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115438691	T	T	115438691	1	4	62	0	1	0	0	0	0	0	0	0	2702	1392	48	3		3	CASP7	10	115438691	5'Flank	SNP	G	TCGA-17-Z032-01A-01W-0746-08	544445	115438691	20096056	586	75790											
NHLRC2	374354	broad.mit.edu	37	chr10	115638021	115638021	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaatctcatgtaaccacaGaactctcccttttttttcag	3	13	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115638021	T	T	115638021	1	4	62	0	1	0	0	0	0	0	0	0	10501	957	33	3		3	NHLRC2	10	115638021	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	199330	115638021	19896726	587	75791											
SLC18A2	6571	broad.mit.edu	37	chr10	119016493	119016493	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccagacagcccgactggGgaagggagttgagagccaag	15	10	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119016493	A	A	119016493	1	1	62	0	1	0	0	0	0	0	0	0	14539	1247	43	4		4	SLC18A2	10	119016493	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3378472	119016493	16518254	588	75792											
ACADSB	36	broad.mit.edu	37	chr10	124793961	124793961	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagctctactcaatatAacaaataatggaatacactt	4	8	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124793961	T	T	124793961	2	4	62	1	0	0	0	0	0	0	0	1	115	352	13	5		5	ACADSB	10	124793961	Silent	SNP	A	TCGA-17-Z032-01A-01W-0746-08	5777468	124793961	10740786	589	75793											
FAM53B	9679	broad.mit.edu	37	chr10	126393875	126393876	+	Intron	INS	-	GAAGGC	GAAGGC													ggggctagaggggcaggaggINSgaaggcggaggcggagccag					rs146131325	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAAGGC	126393876	GAAGGC	GAAGGC	126393875	6	5	62	0	1	1	1	0	0	0	0	0	5631	1247	43	0		0	FAM53B	10	126393875	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	1599914	126393875	9140872	590	75794											
ADAM12	8038	broad.mit.edu	37	chr10	127934273	127934273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagcaccaggaaaaagttaTcatgggagtcagggcagggg	17	6	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127934273	A	A	127934273	1	1	62	0	1	0	0	0	0	0	0	0	236	1450	50	5		5	ADAM12	10	127934273	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1540398	127934273	7600474	591	75795											
DOCK1	1793	broad.mit.edu	37	chr10	128799497	128799497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttttttgtatgaacagCtatggaagacattctttccc	8	7	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128799497	A	A	128799497	1	1	62	0	1	0	0	0	0	0	0	0	4724	812	28	3		3	DOCK1	10	128799497	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	865224	128799497	6735250	592	75796											
GPR123	84435	broad.mit.edu	37	chr10	134896057	134896057	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaataccctccacaagcCttcagcaaaaccaaggttcg	5	14	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134896057	T	T	134896057	2	4	62	1	0	0	0	0	0	0	0	1	6702	696	24	4		4	GPR123	10	134896057	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	6096560	134896057	638690	593	75797											
ATHL1	80162	broad.mit.edu	37	chr11	294091	294091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgtcagctgcccttgcCcctgcaggtgtggacggaga	15	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	294091	T	T	294091	1	4	62	0	1	0	0	0	0	0	0	0	1108	638	22	4		4	ATHL1	11	294091	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		294091	134712425	594	75798											
STIM1	6786	broad.mit.edu	37	chr11	4068552	4068552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccccatctctacaacaaGtaaaagaatttgaccaggca	6	11	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4068552	T	T	4068552	1	4	62	0	1	0	0	0	0	0	0	0	15401	1044	36	3		3	STIM1	11	4068552	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3774461	4068552	130937964	595	75799											
STIM1	6786	broad.mit.edu	37	chr11	4081770	4081770	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttgccacctttttttTgggggagtggagggttctag	13	7	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4081770	G	G	4081770	1	3	62	0	1	0	0	0	0	0	0	0	15401	1827	63	5		5	STIM1	11	4081770	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	13218	4081770	130924746	596	75800											
OR51L1	119682	broad.mit.edu	37	chr11	5020850	5020850	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccacactaggtgtggattCaatcttcatacttctttctt	6	10	5	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5020850	G	G	5020850	4	3	62	1	0	0	0	0	0	1	0	0	11196	838	29	4	640	4	OR51L1	11	5020850	Nonsense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	939080	5020850	129985666	597	75801											
OR52E4	390081	broad.mit.edu	37	chr11	5906390	5906391	+	Missense_Mutation	DNP	CC	AA	AA													ttgtcccacctgcccttaacCctgtcatttatggagtcagg							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	5906391	AA	AA	5906390	3	1	62	1	0	0	0	0	1	0	0	0	11210	623	22	2	870	2	OR52E4	11	5906390	Missense_Mutation	DNP	CC	TCGA-17-Z032-01A-01W-0746-08	885540	5906390	129100126	598	75802											
TAF10	6881	broad.mit.edu	37	chr11	6632286	6632286	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aactgagcacaggaatcccgGacttcaatcccagatgggtg	11	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6632286	A	A	6632286	1	1	62	0	1	0	0	0	0	0	0	0	15633	1189	41	4		4	TAF10	11	6632286	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	725896	6632286	128374230	599	75803											
ZNF215	7762	broad.mit.edu	37	chr11	6960952	6960952	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatgacggtaaaacttcaaGaaggggaggtcagcagggaa	14	6	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6960952	T	T	6960952	1	4	62	0	1	0	0	0	0	0	0	0	17897	957	33	3		3	ZNF215	11	6960952	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	328666	6960952	128045564	600	75804											
NLRP10	338322	broad.mit.edu	37	chr11	7983535	7983536	+	Intron	INS	-	A	A													tacacaagagctggttgtttINSaaagagcctggcacctcctc					rs144515578	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7983536	A	A	7983535	6	5	62	0	1	1	1	0	0	0	0	0	10567	1769	61	0		0	NLRP10	11	7983535	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	1022583	7983535	127022981	601	75805											
TUB	7275	broad.mit.edu	37	chr11	8066125	8066125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtttctttccacaccaaCaaccaatttggcaactctct	5	13	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8066125	A	A	8066125	1	1	62	0	1	0	0	0	0	0	0	0	16868	493	17	3		3	TUB	11	8066125	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	82590	8066125	126940391	602	75806											
ST5	6764	broad.mit.edu	37	chr11	8861441	8861441	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggactaagagaacccaGgggaagggaatttcaggaga	14	5	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8861441	A	A	8861441	1	1	62	0	1	0	0	0	0	0	0	0	15338	1015	35	4		4	ST5	11	8861441	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	795316	8861441	126145075	603	75807											
RRAS2	22800	broad.mit.edu	37	chr11	14322777	14322777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttgtaggttctctggaCttttgtatatatttgacagt	10	4	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14322777	A	A	14322777	1	1	62	0	1	0	0	0	0	0	0	0	13788	580	20	3		3	RRAS2	11	14322777	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5461336	14322777	120683739	604	75808											
PDE3B	5140	broad.mit.edu	37	chr11	14793570	14793570	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgatgaatatctaaatAatatctgtgatcactaaata	5	5	4	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14793570	T	T	14793570	1	4	62	0	1	0	0	0	0	0	0	0	11732	377	13	5		5	PDE3B	11	14793570	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	470793	14793570	120212946	605	75809											
ABCC8	6833	broad.mit.edu	37	chr11	17453721	17453721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctccccctccaccctacCcccaagagatggagaaagga	8	18	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17453721	T	T	17453721	1	4	62	0	1	0	0	0	0	0	0	0	58	638	22	4		4	ABCC8	11	17453721	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2660151	17453721	117552795	606	75810											
TPH1	7166	broad.mit.edu	37	chr11	18042606	18042606	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgagatcatgctgcagctCattcatggcactggttatgc	10	10	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18042606	A	A	18042606	4	1	62	1	0	0	0	0	0	1	0	0	16525	835	29	3	71	3	TPH1	11	18042606	Nonsense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	588885	18042606	116963910	607	75811											
NELL1	4745	broad.mit.edu	37	chr11	21273130	21273130	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgcagaccactttcatggGacagggcagcactagatcca	11	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21273130	T	T	21273130	1	4	62	0	1	0	0	0	0	0	0	0	10428	1189	41	3		3	NELL1	11	21273130	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3230524	21273130	113733386	608	75812											
NELL1	4745	broad.mit.edu	37	chr11	21297131	21297131	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgataccaaagcctggcaGagacacaacaaaaaaagaga	8	10	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21297131	T	T	21297131	1	4	62	0	1	0	0	0	0	0	0	0	10428	957	33	3		3	NELL1	11	21297131	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	24001	21297131	113709385	609	75813											
LUZP2	338645	broad.mit.edu	37	chr11	24686042	24686042	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgacaaggggggaaaatGtctccagggcatgtcagaga	14	8	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24686042	A	A	24686042	1	1	62	0	1	0	0	0	0	0	0	0	9174	1392	48	4		4	LUZP2	11	24686042	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3388911	24686042	110320474	610	75814											
ANO3	63982	broad.mit.edu	37	chr11	26416417	26416417	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaggcttgagccatagcgaCtggccctgaatgcacacaaa	10	12	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26416417	G	G	26416417	1	3	62	0	1	0	0	0	0	0	0	0	698	580	20	4		4	ANO3	11	26416417	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1730375	26416417	108590099	611	75815											
ELP4	26610	broad.mit.edu	37	chr11	31642239	31642239	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccttgtttacatcagtaAttaaaggaagtcagagtgat	8	5	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31642239	G	G	31642239	1	3	62	0	1	0	0	0	0	0	0	0	5124	116	4	5		5	ELP4	11	31642239	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	5225822	31642239	103364277	612	75816											
CCDC73	493860	broad.mit.edu	37	chr11	32768881	32768881	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaggggcacctgcctatatGaggtgtctgttggtccctac	14	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32768881	T	T	32768881	1	4	62	0	1	0	0	0	0	0	0	0	2874	1305	45	3		3	CCDC73	11	32768881	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1126642	32768881	102237635	613	75817											
CSTF3	1479	broad.mit.edu	37	chr11	33127080	33127080	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaaattaaaatggcttggTttataataaacaactactct	5	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33127080	C	C	33127080	1	2	62	0	1	0	0	0	0	0	0	0	4020	1740	60	5		5	CSTF3	11	33127080	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	358199	33127080	101879436	614	75818											
LMO2	4005	broad.mit.edu	37	chr11	33911648	33911648	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctaaataatgtgaacacaTggcattagggtatggaataa	10	4	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33911648	A	A	33911648	1	1	62	0	1	0	0	0	0	0	0	0	8926	1479	51	5		5	LMO2	11	33911648	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	784568	33911648	101094868	615	75819											
LDLRAD3	143458	broad.mit.edu	37	chr11	36067001	36067001	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctagatgtctaaggcaaggtGtcggcccggccgtggtttct	14	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36067001	C	C	36067001	1	2	62	0	1	0	0	0	0	0	0	0	8779	1392	48	4		4	LDLRAD3	11	36067001	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2155353	36067001	98939515	616	75820											
ACCSL	390110	broad.mit.edu	37	chr11	44072648	44072648	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgatccacccgccttggcctCccaaagtgctgggattacag	10	14	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44072648	T	T	44072648	1	4	62	0	1	0	0	0	0	0	0	0	134	870	30	4		4	ACCSL	11	44072648	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8005647	44072648	90933868	617	75821											
ALX4	60529	broad.mit.edu	37	chr11	44296990	44296990	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctggaagaccttctccaGctcctccagctggtagctgg	10	14	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44296990	A	A	44296990	2	1	62	1	0	0	0	0	0	0	0	1	558	962	34	4		4	ALX4	11	44296990	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	224342	44296990	90709526	618	75822											
PRDM11	56981	broad.mit.edu	37	chr11	45193091	45193091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttaagggagaggggtGgctggtgatgagatgctgtg	21	3	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45193091	T	T	45193091	1	4	62	0	1	0	0	0	0	0	0	0	12558	1363	47	2		2	PRDM11	11	45193091	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	896101	45193091	89813425	619	75823											
F2	2147	broad.mit.edu	37	chr11	46744885	46744885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgagaacagggagcaagCgtacctcaagcccaacagcc	12	13	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46744885	T	T	46744885	1	4	62	0	1	0	0	0	0	0	0	0	5385	783	27	4		4	F2	11	46744885	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1551794	46744885	88261631	620	75824											
OR10AG1	282770	broad.mit.edu	37	chr11	55735807	55735807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacatgggagtctggagagCggggtgaatttttattagta	14	3	1	2	rs139897319	byFrequency	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55735807	A	A	55735807	3	1	62	1	0	0	0	0	1	0	0	0	10991	768	27	3	775	3	OR10AG1	11	55735807	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8990922	55735807	79270709	621	75825											
OR8H2	390151	broad.mit.edu	37	chr11	55872499	55872500	+	5'Flank	DNP	GC	TT	TT													gtatcagctttgatttctcaGcagtttagagcaggtgaaca							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55872500	TT	TT	55872499	1	4	62	0	1	0	0	0	0	0	0	0	11332	986	34	3		3	OR8H2	11	55872499	5'Flank	DNP	GC	TCGA-17-Z032-01A-01W-0746-08	136692	55872499	79134017	622	75826											
OR1S2	219958	broad.mit.edu	37	chr11	57970918	57970919	+	Nonsense_Mutation	DNP	CC	AT	AT													ggagaaggctttccactttcCctgtgtggatgatactccca							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	57970919	AT	AT	57970918	4	1	62	1	0	0	0	0	0	1	0	0	11067	632	22	2	244	2	OR1S2	11	57970918	Nonsense_Mutation	DNP	CC	TCGA-17-Z032-01A-01W-0746-08	2098419	57970918	77035598	623	75827											
OR1S1	219959	broad.mit.edu	37	chr11	57983165	57983165	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaggtgccctgagaaagCtcatcaatagaaaaatttct	8	7	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57983165	T	T	57983165	3	4	62	1	0	0	0	0	1	0	0	0	11066	797	28	4	951	4	OR1S1	11	57983165	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	12247	57983165	77023351	624	75828											
OR4D10	390197	broad.mit.edu	37	chr11	59245666	59245666	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcatttcgtgccctgcaTctatgtctatgcccggccct	8	16	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59245666	G	G	59245666	3	3	62	1	0	0	0	0	1	0	0	0	11148	1435	50	5	766	5	OR4D10	11	59245666	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1262501	59245666	75760850	625	75829											
STX3	6809	broad.mit.edu	37	chr11	59553428	59553428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcacctatgaagcggggaGctgaggctgcagtcaaagct	16	9	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59553428	T	T	59553428	1	4	62	0	1	0	0	0	0	0	0	0	15464	986	34	3		3	STX3	11	59553428	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	307762	59553428	75453088	626	75830											
C11orf9	745	broad.mit.edu	37	chr11	61539137	61539137	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggcctccccagggtccGctctccccgggccctggttc	11	21	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61539137	A	A	61539137	2	1	62	1	0	0	0	0	0	0	0	1	1683	1074	38	4		4	C11orf9	11	61539137	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1985709	61539137	73467379	627	75831											
FADS2	9415	broad.mit.edu	37	chr11	61608169	61608169	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccaagtggaaccaccttgTccacaaattcgtcattggcc	7	14	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61608169	C	C	61608169	3	2	62	1	0	0	0	0	1	0	0	0	5412	1667	58	5	604	5	FADS2	11	61608169	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	69032	61608169	73398347	628	75832											
RARRES3	5920	broad.mit.edu	37	chr11	63306060	63306060	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggctgtcacccactgaggAcagggacagagagggtgaaa	16	8	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63306060	T	T	63306060	1	4	62	0	1	0	0	0	0	0	0	0	13165	290	10	5		5	RARRES3	11	63306060	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1697891	63306060	71700456	629	75833											
POLA2	23649	broad.mit.edu	37	chr11	65036032	65036032	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgtgttagccaggatggtCtctgtctcctgatctcgtga	11	10	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65036032	T	T	65036032	1	4	62	0	1	0	0	0	0	0	0	0	12283	928	32	4		4	POLA2	11	65036032	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1729972	65036032	69970484	630	75834											
EHBP1L1	254102	broad.mit.edu	37	chr11	65357336	65357336	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagttcaggctgctcacaAagcctggactggggacttcc	11	13	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65357336	G	G	65357336	1	3	62	0	1	0	0	0	0	0	0	0	5016	29	1	5		5	EHBP1L1	11	65357336	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	321304	65357336	69649180	631	75835											
SHANK2	22941	broad.mit.edu	37	chr11	70336362	70336362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggcaacttctgtgggGgagtgccacacttcttacct	12	12	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70336362	T	T	70336362	1	4	62	0	1	0	0	0	0	0	0	0	14378	1247	43	2		2	SHANK2	11	70336362	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4979026	70336362	64670154	632	75836											
PDE2A	5138	broad.mit.edu	37	chr11	72359231	72359231	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataccaggatctagcccttGcccctatctttgggcctggt	9	13	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72359231	C	C	72359231	1	2	62	0	1	0	0	0	0	0	0	0	11730	1334	46	4		4	PDE2A	11	72359231	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2022869	72359231	62647285	633	75837											
DLG2	1740	broad.mit.edu	37	chr11	84641508	84641508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacactgcctgataatcCtaccctgttctttgaacaac	4	14	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84641508	A	A	84641508	1	1	62	0	1	0	0	0	0	0	0	0	4595	696	24	2		2	DLG2	11	84641508	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	12282277	84641508	50365008	634	75838											
FAT3	120114	broad.mit.edu	37	chr11	92159621	92159621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaagtctttgcccatgcCtatgtcctgaaaggtattgc	9	10	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92159621	A	A	92159621	1	1	62	0	1	0	0	0	0	0	0	0	5748	696	24	2		2	FAT3	11	92159621	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	7518113	92159621	42846895	635	75839											
AMOTL1	154810	broad.mit.edu	37	chr11	94536188	94536188	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacaaccacatagactcttgGactagaaagagacgcctctg	8	11	2	3	rs138121742	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94536188	A	A	94536188	1	1	62	0	1	0	0	0	0	0	0	0	583	1189	41	4		4	AMOTL1	11	94536188	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2376567	94536188	40470328	636	75840											
CNTN5	53942	broad.mit.edu	37	chr11	99386774	99386774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttaccctacactaaaaCagtggttcacatatgattat	5	11	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99386774	A	A	99386774	1	1	62	0	1	0	0	0	0	0	0	0	3676	493	17	3		3	CNTN5	11	99386774	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4850586	99386774	35619742	637	75841											
CNTN5	53942	broad.mit.edu	37	chr11	99673837	99673837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatagtgcccccctgcaCcatgatctgtgtccagaaag	9	13	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99673837	A	A	99673837	1	1	62	0	1	0	0	0	0	0	0	0	3676	522	18	3		3	CNTN5	11	99673837	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	287063	99673837	35332679	638	75842											
CNTN5	53942	broad.mit.edu	37	chr11	100044846	100044846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatagaaaaatggatttgaCagcatagttaaaggcaacgg	12	4	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100044846	A	A	100044846	1	1	62	0	1	0	0	0	0	0	0	0	3676	493	17	3		3	CNTN5	11	100044846	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	371009	100044846	34961670	639	75843											
CNTN5	53942	broad.mit.edu	37	chr11	100170119	100170120	+	Missense_Mutation	DNP	GC	AA	AA													aaattgtggtcatctgttcaGctgaaggaggtcagtttttt							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	100170120	AA	AA	100170119	3	1	62	1	0	0	0	0	1	0	0	0	3676	971	34	4	2681	4	CNTN5	11	100170119	Missense_Mutation	DNP	GC	TCGA-17-Z032-01A-01W-0746-08	125273	100170119	34836397	640	75844											
PGR	5241	broad.mit.edu	37	chr11	100979859	100979859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaattggcattctgtcCttgtctctttcttcatgatt	5	12	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100979859	A	A	100979859	1	1	62	0	1	0	0	0	0	0	0	0	11900	696	24	2		2	PGR	11	100979859	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	809740	100979859	34026657	641	75845											
GUCY1A2	2977	broad.mit.edu	37	chr11	106635536	106635536	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttcctatactgaaaaaaAgcaaagcttttttctttttt	4	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106635536	G	G	106635536	1	3	62	0	1	0	0	0	0	0	0	0	6958	87	3	5		5	GUCY1A2	11	106635536	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	5655677	106635536	28370980	642	75846											
NCAM1	4684	broad.mit.edu	37	chr11	112864035	112864035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaggagcaagtgacagagAgttgggggtggggaggtgcc	21	4	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112864035	G	G	112864035	1	3	62	0	1	0	0	0	0	0	0	0	10297	319	11	5		5	NCAM1	11	112864035	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	6228499	112864035	22142481	643	75847											
FAM55A	120400	broad.mit.edu	37	chr11	114425109	114425109	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctagcttagaccacagagGtgatgacaatattccagaac	9	10	0	5	rs145714112	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114425109	A	A	114425109	1	1	62	0	1	0	0	0	0	0	0	0	5635	1276	44	4		4	FAM55A	11	114425109	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1561074	114425109	20581407	644	75848											
PAFAH1B2	5049	broad.mit.edu	37	chr11	117038616	117038616	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaggagaaaaattagccaAggaagattgttgtttaaatt	10	3	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117038616	T	T	117038616	1	4	62	0	1	0	0	0	0	0	0	0	11479	87	3	5		5	PAFAH1B2	11	117038616	3'UTR	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2613507	117038616	17967900	645	75849											
GRIK4	2900	broad.mit.edu	37	chr11	120789914	120789914	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaggtctgaaatgtaTgccaagtttaaggaacatga	13	4	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120789914	C	C	120789914	1	2	62	0	1	0	0	0	0	0	0	0	6842	1479	51	5		5	GRIK4	11	120789914	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3751298	120789914	14216602	646	75850											
OR4D5	219875	broad.mit.edu	37	chr11	123810832	123810832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccagctgccattctgtgGgcctgacaagctggacaact	10	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123810832	T	T	123810832	3	4	62	1	0	0	0	0	1	0	0	0	11151	1232	43	2	511	2	OR4D5	11	123810832	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3020918	123810832	11195684	647	75851											
ETS1	2113	broad.mit.edu	37	chr11	128376329	128376329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccgcctaagtacagaagCaatagctatatgctcacaac	6	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128376329	A	A	128376329	1	1	62	0	1	0	0	0	0	0	0	0	5317	725	25	3		3	ETS1	11	128376329	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4565497	128376329	6630187	648	75852											
ZBTB44	29068	broad.mit.edu	37	chr11	130172339	130172339	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtaaataaaaataattctCttggaagaatgggttagttt	8	3	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130172339	T	T	130172339	1	4	62	0	1	0	0	0	0	0	0	0	17671	928	32	4		4	ZBTB44	11	130172339	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1796010	130172339	4834177	649	75853											
OPCML	4978	broad.mit.edu	37	chr11	132307873	132307873	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatagatgctcaataagcatTggccaacacaaatgtgatag	8	7	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132307873	A	A	132307873	1	1	62	0	1	0	0	0	0	0	0	0	10968	1827	63	5		5	OPCML	11	132307873	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2135534	132307873	2698643	650	75854											
OPCML	4978	broad.mit.edu	37	chr11	132641388	132641388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaataggtgagaatgCaagacaagcaattaatccta	9	5	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132641388	A	A	132641388	1	1	62	0	1	0	0	0	0	0	0	0	10968	725	25	3		3	OPCML	11	132641388	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	333515	132641388	2365128	651	75855											
GLB1L2	89944	broad.mit.edu	37	chr11	134239454	134239454	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactgcacaagcgatcctcCtgccttggcctcccaaagtg	8	17	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134239454	T	T	134239454	1	4	62	0	1	0	0	0	0	0	0	0	6493	696	24	4		4	GLB1L2	11	134239454	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1598066	134239454	767062	652	75856											
CACNA1C	775	broad.mit.edu	37	chr12	2386459	2386459	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttctagcaactcatgtccTggaaatgtctggtttaattc	8	8	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2386459	A	A	2386459	1	1	62	0	1	0	0	0	0	0	0	0	2566	1595	55	5		5	CACNA1C	12	2386459	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08		2386459	131465436	653	75857											
TSPAN9	10867	broad.mit.edu	37	chr12	3336574	3336574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgacagctctagggcaGcccatcatggcctgtgcttc	10	14	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3336574	T	T	3336574	1	4	62	0	1	0	0	0	0	0	0	0	16779	986	34	3		3	TSPAN9	12	3336574	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	950115	3336574	130515321	654	75858											
PRMT8	56341	broad.mit.edu	37	chr12	3662920	3662920	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttctcctggatggagggGacgggaagctcacactttct	13	9	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3662920	T	T	3662920	1	4	62	0	1	0	0	0	0	0	0	0	12648	1189	41	3		3	PRMT8	12	3662920	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	326346	3662920	130188975	655	75859											
GALNT8	26290	broad.mit.edu	37	chr12	4835378	4835378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgatgtaagtggttctcaGgcctcattctgaaaaacatt	8	8	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4835378	T	T	4835378	1	4	62	0	1	0	0	0	0	0	0	0	6281	1015	35	2		2	GALNT8	12	4835378	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1172458	4835378	129016517	656	75860											
ANO2	57101	broad.mit.edu	37	chr12	5961448	5961448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggagtgagaggactgaaaCtaggagacaaaaaacgcagc	13	6	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5961448	A	A	5961448	1	1	62	0	1	0	0	0	0	0	0	0	697	580	20	3		3	ANO2	12	5961448	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1126070	5961448	127890447	657	75861											
LRP6	4040	broad.mit.edu	37	chr12	12339962	12339962	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacttgttgcaagccaaaaTggagtgtgtgctccagtcag	11	8	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12339962	C	C	12339962	3	2	62	1	0	0	0	0	1	0	0	0	9049	1464	51	5	4182	5	LRP6	12	12339962	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	6378514	12339962	121511933	658	75862											
PIK3C2G	5288	broad.mit.edu	37	chr12	18621532	18621532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattatttataaagctacaGggaataactagttactgtga	7	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18621532	T	T	18621532	1	4	62	0	1	0	0	0	0	0	0	0	12006	1015	35	2		2	PIK3C2G	12	18621532	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6281570	18621532	115230363	659	75863											
PLEKHA5	54477	broad.mit.edu	37	chr12	19318836	19318836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagtaggttcttagaaaCttcaactttaagcaaaagga	8	6	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19318836	A	A	19318836	1	1	62	0	1	0	0	0	0	0	0	0	12154	580	20	3		3	PLEKHA5	12	19318836	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	697304	19318836	114533059	660	75864											
DDX11	1663	broad.mit.edu	37	chr12	31236920	31236920	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgcaggcaccccgagGcctgctggagaaccggcctg	17	14	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31236920	A	A	31236920	2	1	62	1	0	0	0	0	0	0	0	1	4376	1194	42	4		4	DDX11	12	31236920	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	11918084	31236920	102614975	661	75865											
PDZRN4	29951	broad.mit.edu	37	chr12	41793626	41793626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccccttatatttcttcCttaattgttcaatgggtttt	4	9	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41793626	A	A	41793626	1	1	62	0	1	0	0	0	0	0	0	0	11804	696	24	2		2	PDZRN4	12	41793626	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	10556706	41793626	92058269	662	75866											
TMEM117	84216	broad.mit.edu	37	chr12	44661616	44661616	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaaagaaggaaatgctgtGatttttgataacatggatga	10	2	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44661616	C	C	44661616	1	2	62	0	1	0	0	0	0	0	0	0	16154	1305	45	4		4	TMEM117	12	44661616	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2867990	44661616	89190279	663	75867											
ANO6	196527	broad.mit.edu	37	chr12	45708606	45708606	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctttacagcaacaccttGattagtatttgactgcataa	5	9	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45708606	T	T	45708606	1	4	62	0	1	0	0	0	0	0	0	0	701	1305	45	3		3	ANO6	12	45708606	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1046990	45708606	88143289	664	75868											
ARID2	196528	broad.mit.edu	37	chr12	46274805	46274805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccaaagcctgctcctagGttgaacttccagctcatggc	9	13	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46274805	T	T	46274805	1	4	62	0	1	0	0	0	0	0	0	0	917	1276	44	3		3	ARID2	12	46274805	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	566199	46274805	87577090	665	75869											
VDR	7421	broad.mit.edu	37	chr12	48287509	48287509	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttctggtcaacaaggtcaCttgctcattgccaggaattg	10	9	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48287509	T	T	48287509	1	4	62	0	1	0	0	0	0	0	0	0	17276	580	20	4		4	VDR	12	48287509	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2012704	48287509	85564386	666	75870											
PFKM	5213	broad.mit.edu	37	chr12	48531094	48531094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcaggtgatccgcctgCcttggcctccaaaaatgctg	10	14	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48531094	A	A	48531094	1	1	62	0	1	0	0	0	0	0	0	0	11860	754	26	3		3	PFKM	12	48531094	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	243585	48531094	85320801	667	75871											
ACVR1B	91	broad.mit.edu	37	chr12	52377796	52377796	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgcagataatggcacctgGacacagctgtggcttgtttc	11	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52377796	A	A	52377796	4	1	62	1	0	0	0	0	0	1	0	0	221	1183	41	4	970	4	ACVR1B	12	52377796	Nonsense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3846702	52377796	81474099	668	75872											
KRT86	3892	broad.mit.edu	37	chr12	52698625	52698625	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagacactggggactcctttCcccaggcttcatggaatggg	13	11	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52698625	G	G	52698625	1	3	62	0	1	0	0	0	0	0	0	0	8571	870	30	4		4	KRT86	12	52698625	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	320829	52698625	81153270	669	75873											
GPR182	11318	broad.mit.edu	37	chr12	57390347	57390347	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaaaatactgaggtgtggaGagagagacaggatcaggagc	15	4	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57390347	A	A	57390347	1	1	62	0	1	0	0	0	0	0	0	0	6742	957	33	4		4	GPR182	12	57390347	3'UTR	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4691722	57390347	76461548	670	75874											
FAM19A2	338811	broad.mit.edu	37	chr12	62225642	62225642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctcccctcccgctaccCcacgacaggccccggtgtgt	8	22	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62225642	A	A	62225642	1	1	62	0	1	0	0	0	0	0	0	0	5579	638	22	2		2	FAM19A2	12	62225642	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4835295	62225642	71626253	671	75875											
SRGAP1	57522	broad.mit.edu	37	chr12	64539861	64539861	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagtggatttggggatagaGagaaaggtgtacttagtaca	16	2	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64539861	A	A	64539861	1	1	62	0	1	0	0	0	0	0	0	0	15263	957	33	4		4	SRGAP1	12	64539861	3'UTR	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2314219	64539861	69312034	672	75876											
PTPRR	5801	broad.mit.edu	37	chr12	71252816	71252816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaccaaaggcttgagcatTggtttcttaagcaccagttc	10	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71252816	C	C	71252816	1	2	62	0	1	0	0	0	0	0	0	0	12918	1827	63	5		5	PTPRR	12	71252816	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	6712955	71252816	62599079	673	75877											
DCN	1634	broad.mit.edu	37	chr12	91572168	91572168	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcattgacagcggaagggGcacactgggcctagggaggg	19	8	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91572168	A	A	91572168	2	1	62	1	0	0	0	0	0	0	0	1	4330	1195	42	4		4	DCN	12	91572168	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	20319352	91572168	42279727	674	75878											
BTG1	694	broad.mit.edu	37	chr12	92494798	92494798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaagatcccaaactagggCagtgggaaatggaagaaatg	13	6	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92494798	T	T	92494798	1	4	62	0	1	0	0	0	0	0	0	0	1563	725	25	4		4	BTG1	12	92494798	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	922630	92494798	41357097	675	75879											
PLXNC1	10154	broad.mit.edu	37	chr12	94563370	94563370	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctggtccctaccccaaccCtgactcaccttcccaagaca	5	19	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94563370	G	G	94563370	1	3	62	0	1	0	0	0	0	0	0	0	12221	696	24	4		4	PLXNC1	12	94563370	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2068572	94563370	39288525	676	75880											
FGD6	55785	broad.mit.edu	37	chr12	95479779	95479779	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctgaaagcaataactgTaatgatagaatgtttcagaa	10	4	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95479779	C	C	95479779	1	2	62	0	1	0	0	0	0	0	0	0	5894	1653	57	5		5	FGD6	12	95479779	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	916409	95479779	38372116	677	75881											
PPTC7	160760	broad.mit.edu	37	chr12	110995680	110995680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcttcacatggcagcaGgagagagaagtgctgagcaa	12	9	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110995680	T	T	110995680	1	4	62	0	1	0	0	0	0	0	0	0	12514	1015	35	2		2	PPTC7	12	110995680	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	15515901	110995680	22856215	678	75882											
TPCN1	53373	broad.mit.edu	37	chr12	113659662	113659662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggcgaccctcacgtgggCtcccagccaggggctgggag	17	13	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113659662	A	A	113659662	1	1	62	0	1	0	0	0	0	0	0	0	16519	812	28	3		3	TPCN1	12	113659662	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2663982	113659662	20192233	679	75883											
MED13L	23389	broad.mit.edu	37	chr12	116617338	116617338	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctgaggccggagaagcaCgtgaaccgagaaaataggga	16	7	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116617338	G	G	116617338	1	3	62	0	1	0	0	0	0	0	0	0	9524	551	19	4		4	MED13L	12	116617338	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2957676	116617338	17234557	680	75884											
MLEC	9761	broad.mit.edu	37	chr12	121131964	121131964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatcctgtatcaaactgaGcggtacaatgaggagacctt	10	9	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121131964	T	T	121131964	3	4	62	1	0	0	0	0	1	0	0	0	9706	962	34	3	312	3	MLEC	12	121131964	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4514626	121131964	12719931	681	75885											
DNAH10	196385	broad.mit.edu	37	chr12	124362659	124362659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcattgaaacaggcaaaacCaagagaagcagaagtgggga	13	6	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124362659	A	A	124362659	1	1	62	0	1	0	0	0	0	0	0	0	4638	609	21	2		2	DNAH10	12	124362659	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3230695	124362659	9489236	682	75886											
MTUS2	23281	broad.mit.edu	37	chr13	29675567	29675567	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttaaataaatgatgttaaaAgtagcaaagcactgccaagc	8	6	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29675567	T	T	29675567	1	4	62	0	1	0	0	0	0	0	0	0	10060	87	3	5		5	MTUS2	13	29675567	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08		29675567	85494311	683	75887											
STARD13	90627	broad.mit.edu	37	chr13	33897252	33897252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcagcacaggttgtaatGtgacgaggcccctaccaggg	15	10	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33897252	T	T	33897252	1	4	62	0	1	0	0	0	0	0	0	0	15374	1392	48	3		3	STARD13	13	33897252	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4221685	33897252	81272626	684	75888											
ENOX1	55068	broad.mit.edu	37	chr13	44013451	44013451	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcttggctcactgcaacCtctgcctcccaggttcaagt	8	14	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44013451	T	T	44013451	1	4	62	0	1	0	0	0	0	0	0	0	5168	696	24	4		4	ENOX1	13	44013451	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	10116199	44013451	71156427	685	75889											
ESD	2098	broad.mit.edu	37	chr13	47355862	47355862	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaaatcatagtcttacaaTggtttgaactagtaacaatg	7	7	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47355862	C	C	47355862	1	2	62	0	1	0	0	0	0	0	0	0	5292	1479	51	5		5	ESD	13	47355862	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3342411	47355862	67814016	686	75890											
PCDH9	5101	broad.mit.edu	37	chr13	67718020	67718020	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagacgatgaaagggaaacTgaagagtgcatccctacaga	12	7	0	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67718020	A	A	67718020	1	1	62	0	1	0	0	0	0	0	0	0	11612	1595	55	5		5	PCDH9	13	67718020	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	20362158	67718020	47451858	687	75891											
C13orf34	79866	broad.mit.edu	37	chr13	73327077	73327077	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcattatacaggtaaatgGagcgttgtgcagtgaacaga	12	6	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73327077	A	A	73327077	1	1	62	0	1	0	0	0	0	0	0	0	1741	1189	41	4		4	C13orf34	13	73327077	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5609057	73327077	41842801	688	75892											
HS6ST3	266722	broad.mit.edu	37	chr13	97361978	97361978	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtagcctttataactatgaGaaataaatgttgttgcttca	7	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97361978	C	C	97361978	1	2	62	0	1	0	0	0	0	0	0	0	7439	957	33	4		4	HS6ST3	13	97361978	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	24034901	97361978	17807900	689	75893											
UBAC2	337867	broad.mit.edu	37	chr13	99948489	99948489	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattactcattagttttaaAaaagtttaaataatgtatca	4	3	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99948489	G	G	99948489	1	3	62	0	1	0	0	0	0	0	0	0	16961	29	1	5		5	UBAC2	13	99948489	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2586511	99948489	15221389	690	75894											
NALCN	259232	broad.mit.edu	37	chr13	101757044	101757044	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaaacataaaggttccagGaaaggcttctaagagttaga	11	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101757044	T	T	101757044	1	4	62	0	1	0	0	0	0	0	0	0	10242	1189	41	3		3	NALCN	13	101757044	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1808555	101757044	13412834	691	75895											
ITGBL1	9358	broad.mit.edu	37	chr13	102351609	102351609	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacacaaatactgagtcttcAggttgtcattccagggttgg	11	8	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102351609	G	G	102351609	1	3	62	0	1	0	0	0	0	0	0	0	7972	203	7	5		5	ITGBL1	13	102351609	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	594565	102351609	12818269	692	75896											
MYO16	23026	broad.mit.edu	37	chr13	109475652	109475652	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttcctgcttattctctTttgccatcttctctacctgc	4	14	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109475652	A	A	109475652	1	1	62	0	1	0	0	0	0	0	0	0	10158	1856	64	5		5	MYO16	13	109475652	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	7124043	109475652	5694226	693	75897											
DCUN1D2	55208	broad.mit.edu	37	chr13	114128538	114128538	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctgctccagtcttggcaGaagagcctttagcttctcca	8	14	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114128538	A	A	114128538	2	1	62	1	0	0	0	0	0	0	0	1	4347	933	33	4		4	DCUN1D2	13	114128538	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4652886	114128538	1041340	694	75898											
TFDP1	7027	broad.mit.edu	37	chr13	114268358	114268358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgcgtttgtgagttgtGtgtgagatgtgtgttgtgtg	18	2	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114268358	T	T	114268358	1	4	62	0	1	0	0	0	0	0	0	0	15920	1392	48	3		3	TFDP1	13	114268358	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	139820	114268358	901520	695	75899											
MYH7	4625	broad.mit.edu	37	chr14	23900920	23900920	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaggaggcaggtgagagctCttctccctccctttctgcgg	13	12	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23900920	T	T	23900920	1	4	62	0	1	0	0	0	0	0	0	0	10133	928	32	4		4	MYH7	14	23900920	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		23900920	83448620	696	75900											
AP1G2	8906	broad.mit.edu	37	chr14	24032623	24032623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagggcattgtagaggCggcgcacagagtaggcatgt	16	9	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24032623	T	T	24032623	3	4	62	1	0	0	0	0	1	0	0	0	735	768	27	4	1017	4	AP1G2	14	24032623	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	131703	24032623	83316917	697	75901											
PSME1	5720	broad.mit.edu	37	chr14	24608169	24608169	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatatagttataccactGcccatcagcccaagtctctt	4	12	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24608169	T	T	24608169	1	4	62	0	1	0	0	0	0	0	0	0	12812	1334	46	3		3	PSME1	14	24608169	3'UTR	SNP	G	TCGA-17-Z032-01A-01W-0746-08	575546	24608169	82741371	698	75902											
NYNRIN	57523	broad.mit.edu	37	chr14	24876171	24876171	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagccagagttcttccttctCtttagctattgtgtgtatgt	8	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24876171	G	G	24876171	1	3	62	0	1	0	0	0	0	0	0	0	10891	928	32	4		4	NYNRIN	14	24876171	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	268002	24876171	82473369	699	75903											
FOXG1	2290	broad.mit.edu	37	chr14	29237817	29237817	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcgtcctcctccacgtcGccgcaggccccctcgaccct	9	23	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237817	A	A	29237817	2	1	62	1	0	0	0	0	0	0	0	1	6067	1074	38	4		4	FOXG1	14	29237817	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4361646	29237817	78111723	700	75904											
NUBPL	80224	broad.mit.edu	37	chr14	32108177	32108177	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctctctattggttattcTagttatacatttgtctaaat	4	7	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32108177	C	C	32108177	1	2	62	0	1	0	0	0	0	0	0	0	10812	1537	53	5		5	NUBPL	14	32108177	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2870360	32108177	75241363	701	75905											
AKAP6	9472	broad.mit.edu	37	chr14	32832920	32832920	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagatggtgcccacccaaaCtgagggtgggtctgcctctc	12	12	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32832920	G	G	32832920	1	3	62	0	1	0	0	0	0	0	0	0	455	580	20	4		4	AKAP6	14	32832920	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	724743	32832920	74516620	702	75906											
NPAS3	64067	broad.mit.edu	37	chr14	34180749	34180749	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacttcaaagaatcttttgAtggagaaaaatgttttcatt	6	4	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34180749	T	T	34180749	1	4	62	0	1	0	0	0	0	0	0	0	10659	348	12	5		5	NPAS3	14	34180749	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1347829	34180749	73168791	703	75907											
MDGA2	161357	broad.mit.edu	37	chr14	48065365	48065365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgtcaaaactcatgggcCtacaaacttaaaataagtgc	6	8	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48065365	T	T	48065365	1	4	62	0	1	0	0	0	0	0	0	0	9500	696	24	4		4	MDGA2	14	48065365	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	13884616	48065365	59284175	704	75908											
C14orf104	55172	broad.mit.edu	37	chr14	50101405	50101405	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaagccctcgtgccgccGggccagcgcaagcgcgtctg	16	16	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50101405	T	T	50101405	2	4	62	1	0	0	0	0	0	0	0	1	1749	1115	39	1		1	C14orf104	14	50101405	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2036040	50101405	57248135	705	75909											
DAAM1	23002	broad.mit.edu	37	chr14	59797409	59797409	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccatgagctcagcagggtGaggtcttccgctcagctcac	11	14	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59797409	A	A	59797409	1	1	62	0	1	0	0	0	0	0	0	0	4248	1305	45	4		4	DAAM1	14	59797409	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	9696004	59797409	47552131	706	75910											
MNAT1	4331	broad.mit.edu	37	chr14	61379374	61379374	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgaatattggcccccactGtcttctggcttgtagagttt	10	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61379374	C	C	61379374	1	2	62	0	1	0	0	0	0	0	0	0	9768	1392	48	4		4	MNAT1	14	61379374	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1581965	61379374	45970166	707	75911											
RHOJ	57381	broad.mit.edu	37	chr14	63703077	63703077	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacatacttgagaccaggTaatttacaaaagaaagaggt	9	5	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63703077	A	A	63703077	1	1	62	0	1	0	0	0	0	0	0	0	13450	1653	57	5		5	RHOJ	14	63703077	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2323703	63703077	43646463	708	75912											
RHOJ	57381	broad.mit.edu	37	chr14	63708843	63708843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaaatgaagcgtatataCtttctttctggaatagccta	8	6	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63708843	A	A	63708843	1	1	62	0	1	0	0	0	0	0	0	0	13450	580	20	3		3	RHOJ	14	63708843	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5766	63708843	43640697	709	75913											
SYNE2	23224	broad.mit.edu	37	chr14	64518664	64518664	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctccaggctaccaagcatgGattttctgttttaaaggggc	10	10	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64518664	C	C	64518664	3	2	62	1	0	0	0	0	1	0	0	0	15565	1174	41	4	8219	4	SYNE2	14	64518664	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	809821	64518664	42830876	710	75914											
GPHN	10243	broad.mit.edu	37	chr14	67644150	67644150	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaatttgattgcactgtgAtctgagagacagtttgttgt	10	5	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67644150	G	G	67644150	1	3	62	0	1	0	0	0	0	0	0	0	6675	348	12	5		5	GPHN	14	67644150	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	3125486	67644150	39705390	711	75915											
RGS6	9628	broad.mit.edu	37	chr14	72913659	72913659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagcttcacttgctcaccCgccactcacctcctgttgtg	7	16	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72913659	A	A	72913659	1	1	62	0	1	0	0	0	0	0	0	0	13418	667	23	1		1	RGS6	14	72913659	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5269509	72913659	34435881	712	75916											
SNW1	22938	broad.mit.edu	37	chr14	78221206	78221206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccagaatttctatcacaCtgacattcataatcagaggt	5	9	4	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78221206	A	A	78221206	1	1	62	0	1	0	0	0	0	0	0	0	14993	580	20	3		3	SNW1	14	78221206	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5307547	78221206	29128334	713	75917											
NRXN3	9369	broad.mit.edu	37	chr14	79912241	79912241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatttgagaattgtgagcgGgagagtggtagggaccaatg	16	5	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79912241	A	A	79912241	1	1	62	0	1	0	0	0	0	0	0	0	10762	1247	43	4		4	NRXN3	14	79912241	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1691035	79912241	27437299	714	75918											
GALC	2581	broad.mit.edu	37	chr14	88399585	88399585	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaacaaagaaaactaacCtatagtgatagaattcctat	6	7	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88399585	A	A	88399585	1	1	62	0	1	0	0	0	0	0	0	0	6263	696	24	2		2	GALC	14	88399585	3'UTR	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8487344	88399585	18949955	715	75919											
KCNK10	54207	broad.mit.edu	37	chr14	88739935	88739935	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgtgtgtgctgagctggtCagagcagcccaggcatatcc	13	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88739935	G	G	88739935	1	3	62	0	1	0	0	0	0	0	0	0	8129	841	29	4		4	KCNK10	14	88739935	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	340350	88739935	18609605	716	75920											
ZC3H14	79882	broad.mit.edu	37	chr14	89053511	89053512	+	Intron	INS	-	T	T													gatatgtatccttcaattccINStttttttttttggaggtaga					rs34911850		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89053512	T	T	89053511	6	5	62	0	1	1	1	0	0	0	0	0	17692	696	24	0		0	ZC3H14	14	89053511	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	313576	89053511	18296029	717	75921											
TRIP11	9321	broad.mit.edu	37	chr14	92470887	92470887	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccactactttcaaatctagTggacaattttttattttcat	4	8	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92470887	A	A	92470887	3	1	62	1	0	0	0	0	1	0	0	0	16680	1696	59	5	2550	5	TRIP11	14	92470887	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3417376	92470887	14878653	718	75922											
KIAA1409	57578	broad.mit.edu	37	chr14	94158442	94158442	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttataagctggatgttctgCttgcataagcattttgatta	8	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94158442	T	T	94158442	1	4	62	0	1	0	0	0	0	0	0	0	8300	812	28	4		4	KIAA1409	14	94158442	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1687555	94158442	13191098	719	75923											
SETD3	84193	broad.mit.edu	37	chr14	99880133	99880133	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaggtcacttctcactgaAgcccttccctcccttccagg	7	17	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99880133	C	C	99880133	1	2	62	0	1	0	0	0	0	0	0	0	14245	87	3	5		5	SETD3	14	99880133	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	5721691	99880133	7469407	720	75924											
EML1	2009	broad.mit.edu	37	chr14	100353381	100353381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggtgtgagcctcccagCtcagactgcactgctgtctg	12	12	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100353381	A	A	100353381	1	1	62	0	1	0	0	0	0	0	0	0	5138	812	28	3		3	EML1	14	100353381	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	473248	100353381	6996159	721	75925											
OR4N4	283694	broad.mit.edu	37	chr15	22364138	22364138	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagatcagcccttctcttaTcctaatggtttcttcttgcc	6	12	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22364138	C	C	22364138	1	2	62	0	1	0	0	0	0	0	0	0	11172	1450	50	5		5	OR4N4	15	22364138	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08		22364138	80167254	722	75926											
SNRPN	6638	broad.mit.edu	37	chr15	25154061	25154061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtatctgaaaaatcatcatAgaaaattgtttggtttagct	7	4	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25154061	T	T	25154061	1	4	62	0	1	0	0	0	0	0	0	0	14984	435	15	5		5	SNRPN	15	25154061	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2789923	25154061	77377331	723	75927											
GABRG3	2567	broad.mit.edu	37	chr15	27568918	27568918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacctgcacaccccagaacCctttccctccttccccactc	3	23	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27568918	A	A	27568918	1	1	62	0	1	0	0	0	0	0	0	0	6233	638	22	2		2	GABRG3	15	27568918	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2414857	27568918	74962474	724	75928											
GABRG3	2567	broad.mit.edu	37	chr15	27617966	27617966	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcacttccctcctggtgccTctgtctctctcccagtccca	5	20	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27617966	A	A	27617966	1	1	62	0	1	0	0	0	0	0	0	0	6233	1566	54	5		5	GABRG3	15	27617966	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	49048	27617966	74913426	725	75929											
FAM189A1	23359	broad.mit.edu	37	chr15	29572365	29572365	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacaatgttcagttctattaGatcattaaaagacgtatctc	5	7	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29572365	C	C	29572365	1	2	62	0	1	0	0	0	0	0	0	0	5562	957	33	4		4	FAM189A1	15	29572365	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1954399	29572365	72959027	726	75930											
FAM189A1	23359	broad.mit.edu	37	chr15	29627122	29627122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctggccagccctggctGctctgtctatcccagccagg	12	15	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29627122	T	T	29627122	1	4	62	0	1	0	0	0	0	0	0	0	5562	1334	46	3		3	FAM189A1	15	29627122	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	54757	29627122	72904270	727	75931											
TRPM1	4308	broad.mit.edu	37	chr15	31363186	31363186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccattgggccataaccCgccccagcatcagggatctt	10	15	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31363186	A	A	31363186	1	1	62	0	1	0	0	0	0	0	0	0	16710	667	23	1		1	TRPM1	15	31363186	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1736064	31363186	71168206	728	75932											
RYR3	6263	broad.mit.edu	37	chr15	33873391	33873391	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacttcacaccagactgaaAgcaggtttttgtgaaactca	7	11	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33873391	G	G	33873391	1	3	62	0	1	0	0	0	0	0	0	0	13881	87	3	5		5	RYR3	15	33873391	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2510205	33873391	68658001	729	75933											
RYR3	6263	broad.mit.edu	37	chr15	33878260	33878260	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagccttaaatctgatagcGgagggccacatcaagtcgat	11	9	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33878260	A	A	33878260	2	1	62	1	0	0	0	0	0	0	0	1	13881	1103	39	4		4	RYR3	15	33878260	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4869	33878260	68653132	730	75934											
ATPBD4	89978	broad.mit.edu	37	chr15	35776490	35776490	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgcacaagaaactacgCtaaaatgtgttagcttaaaa	7	7	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35776490	G	G	35776490	1	3	62	0	1	0	0	0	0	0	0	0	1206	812	28	4		4	ATPBD4	15	35776490	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1898230	35776490	66754902	731	75935											
MGA	23269	broad.mit.edu	37	chr15	42052641	42052641	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgagcggcggcggcgtggtGaaatgagggatctctttgag	18	6	1	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42052641	T	T	42052641	4	4	62	1	0	0	0	0	0	1	0	0	9633	1291	45	3	7386	3	MGA	15	42052641	Nonsense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6276151	42052641	60478751	732	75936											
MAPKBP1	23005	broad.mit.edu	37	chr15	42099009	42099009	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agattgatacaaactgtgccCcgcactcctctccccagctg	7	16	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42099009	T	T	42099009	1	4	62	0	1	0	0	0	0	0	0	0	9384	638	22	4		4	MAPKBP1	15	42099009	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	46368	42099009	60432383	733	75937											
PLA2G4E	123745	broad.mit.edu	37	chr15	42300619	42300619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacccccatctccatatgGcttaatgcctccactgcatc	6	16	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42300619	T	T	42300619	1	4	62	0	1	0	0	0	0	0	0	0	12100	1218	42	3		3	PLA2G4E	15	42300619	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	201610	42300619	60230773	734	75938											
SHF	90525	broad.mit.edu	37	chr15	45464514	45464514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctccggtccttcaaactGggctgtggggaacatatcaa	10	11	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45464514	T	T	45464514	3	4	62	1	0	0	0	0	1	0	0	0	14390	1357	47	2	487	2	SHF	15	45464514	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3163895	45464514	57066878	735	75939											
FBN1	2200	broad.mit.edu	37	chr15	48914627	48914627	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtttcccggttgctaaGgggagtcactagttttattt	11	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48914627	C	C	48914627	1	2	62	0	1	0	0	0	0	0	0	0	5759	1015	35	4		4	FBN1	15	48914627	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3450113	48914627	53616765	736	75940											
C15orf33	196951	broad.mit.edu	37	chr15	49638527	49638527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgattttctatacatatgTcctacaaaatgctatgaagc	5	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49638527	C	C	49638527	1	2	62	0	1	0	0	0	0	0	0	0	1804	1682	58	5		5	C15orf33	15	49638527	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	723900	49638527	52892865	737	75941											
WDR72	256764	broad.mit.edu	37	chr15	54015037	54015037	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaatgtagggctgtttagaGaagtcccttgctcttgccaa	10	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54015037	C	C	54015037	3	2	62	1	0	0	0	0	1	0	0	0	17449	933	33	4	3158	4	WDR72	15	54015037	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4376510	54015037	48516355	738	75942											
TLN2	83660	broad.mit.edu	37	chr15	63004466	63004466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgaatgaaatgcttcagGgaagtggtactgactcagcc	11	8	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63004466	T	T	63004466	1	4	62	0	1	0	0	0	0	0	0	0	16071	1247	43	2		2	TLN2	15	63004466	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	8989429	63004466	39526926	739	75943											
TLN2	83660	broad.mit.edu	37	chr15	63106234	63106234	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttggccaggctggtccccTaacctcaggtgatctgccca	11	14	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63106234	A	A	63106234	1	1	62	0	1	0	0	0	0	0	0	0	16071	1537	53	5		5	TLN2	15	63106234	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	101768	63106234	39425158	740	75944											
AAGAB	79719	broad.mit.edu	37	chr15	67514316	67514316	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcaacttcatgcatcacCtatttttccaagtccctctc	2	15	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67514316	T	T	67514316	1	4	62	0	1	0	0	0	0	0	0	0	15	696	24	4		4	AAGAB	15	67514316	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4408082	67514316	35017076	741	75945											
NOX5	79400	broad.mit.edu	37	chr15	69325682	69325682	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccgaggtgggctcctcctaGacagagcgacccacagagga	14	13	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69325682	T	T	69325682	1	4	62	0	1	0	0	0	0	0	0	0	10654	957	33	3		3	NOX5	15	69325682	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1811366	69325682	33205710	742	75946											
GLCE	26035	broad.mit.edu	37	chr15	69466741	69466741	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcagatcacctgaggtcagGagtttgagaccaacctggcc	13	11	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69466741	T	T	69466741	1	4	62	0	1	0	0	0	0	0	0	0	6496	1189	41	3		3	GLCE	15	69466741	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	141059	69466741	33064651	743	75947											
LRRC49	54839	broad.mit.edu	37	chr15	71317807	71317807	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactacatcaacaagtctgcAaaataaccagctagcatcat	4	11	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71317807	T	T	71317807	1	4	62	0	1	0	0	0	0	0	0	0	9093	145	5	5		5	LRRC49	15	71317807	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1851066	71317807	31213585	744	75948											
NRG4	145957	broad.mit.edu	37	chr15	76291942	76291942	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttgatctttggcttcccAgccttcagaactgtcagaaa	8	12	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76291942	G	G	76291942	1	3	62	0	1	0	0	0	0	0	0	0	10745	203	7	5		5	NRG4	15	76291942	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4974135	76291942	26239450	745	75949											
IDH3A	3419	broad.mit.edu	37	chr15	78457721	78457721	+	Intron	SNP	T	C	C													tttttgtattttagtagagaTggggtttcaccatgttggcc							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78457721	C	C	78457721	1	2	62	0	1	0	0	0	0	0	0	0	7566	1479	51	5		5	IDH3A	15	78457721	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2165779	78457721	24073671	746	75950	342	2									
IDH3A	3419	broad.mit.edu	37	chr15	78457723	78457723	+	Intron	SNP	G	A	A													tttgtattttagtagagatgGggtttcaccatgttggccag							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78457723	A	A	78457723	1	1	62	0	1	0	0	0	0	0	0	0	7566	1247	43	4		4	IDH3A	15	78457723	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2	78457723	24073669	747	75951	342	2									
RASGRF1	5923	broad.mit.edu	37	chr15	79343871	79343871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttcggcttcttctcacCtctgtgccaggatgctttct	7	14	4	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79343871	A	A	79343871	1	1	62	0	1	0	0	0	0	0	0	0	13180	696	24	2		2	RASGRF1	15	79343871	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	886148	79343871	23187521	748	75952											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84355263	84355263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggaatcaaatgatttaGttgttcagtttcattgtggg	10	5	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84355263	T	T	84355263	1	4	62	0	1	0	0	0	0	0	0	0	276	1044	36	3		3	ADAMTSL3	15	84355263	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5011392	84355263	18176129	749	75953											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84367251	84367251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcagcttctctcctagGcctggctcagtgccctggga	12	13	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84367251	T	T	84367251	1	4	62	0	1	0	0	0	0	0	0	0	276	1218	42	3		3	ADAMTSL3	15	84367251	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	11988	84367251	18164141	750	75954											
AKAP13	11214	broad.mit.edu	37	chr15	86270342	86270342	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaagaagctgattgtgagaGaagtggcacatgaggagaaa	14	3	0	6			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86270342	C	C	86270342	3	2	62	1	0	0	0	0	1	0	0	0	449	943	33	4	7044	4	AKAP13	15	86270342	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1903091	86270342	16261050	751	75955											
AGBL1	123624	broad.mit.edu	37	chr15	87288682	87288682	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgccacaggaaaagttgtCagtaaatggtctaaaaagga	10	5	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87288682	A	A	87288682	1	1	62	0	1	0	0	0	0	0	0	0	375	841	29	3		3	AGBL1	15	87288682	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1018340	87288682	15242710	752	75956											
KIF7	374654	broad.mit.edu	37	chr15	90188652	90188652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactccctgggcgtgccccCgccctctgactgcagttgct	11	17	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90188652	A	A	90188652	2	1	62	1	0	0	0	0	0	0	0	1	8379	639	23	1		1	KIF7	15	90188652	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2899970	90188652	12342740	753	75957											
E4F1	1877	broad.mit.edu	37	chr16	2278466	2278466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcagaaggcctgccagcGggcccctccggaggccctgc	14	16	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2278466	T	T	2278466	3	4	62	1	0	0	0	0	1	0	0	0	4914	1116	39	1	257	1	E4F1	16	2278466	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08		2278466	88076287	754	75958											
A2BP1	54715	broad.mit.edu	37	chr16	6560489	6560489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagaggagaccaggtgaGggacagcaggcacagatgac	15	9	1	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6560489	T	T	6560489	1	4	62	0	1	0	0	0	0	0	0	0	3	1015	35	2		2	A2BP1	16	6560489	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	4282023	6560489	83794264	755	75959											
A2BP1	54715	broad.mit.edu	37	chr16	7222650	7222650	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggaacacacatcatgccAagttgtagcaacagaggcag	11	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7222650	T	T	7222650	1	4	62	0	1	0	0	0	0	0	0	0	3	145	5	5		5	A2BP1	16	7222650	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	662161	7222650	83132103	756	75960											
A2BP1	54715	broad.mit.edu	37	chr16	7296591	7296591	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatgaacctagggcttttTgttgttgcacatctatttat	7	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7296591	G	G	7296591	1	3	62	0	1	0	0	0	0	0	0	0	3	1827	63	5		5	A2BP1	16	7296591	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	73941	7296591	83058162	757	75961											
A2BP1	54715	broad.mit.edu	37	chr16	7402472	7402472	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcatctgaagacgtggGgtgggtaagaatctgtcacc	13	7	4	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7402472	A	A	7402472	1	1	62	0	1	0	0	0	0	0	0	0	3	1247	43	4		4	A2BP1	16	7402472	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	105881	7402472	82952281	758	75962											
GRIN2A	2903	broad.mit.edu	37	chr16	9915212	9915212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacatccaggacacactcCgtgcttcctacgagaatgat	7	13	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9915212	A	A	9915212	1	1	62	0	1	0	0	0	0	0	0	0	6845	667	23	1		1	GRIN2A	16	9915212	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2512740	9915212	80439541	759	75963											
ZC3H7A	29066	broad.mit.edu	37	chr16	11867982	11867982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactttcaaggttaaaaaaaCccccaaattcagcctatatg	4	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11867982	A	A	11867982	1	1	62	0	1	0	0	0	0	0	0	0	17698	522	18	3		3	ZC3H7A	16	11867982	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1952770	11867982	78486771	760	75964											
HS3ST4	9951	broad.mit.edu	37	chr16	25931794	25931794	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaatgaatacactggtcTccttgctgtttctcaaacac	7	10	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25931794	C	C	25931794	1	2	62	0	1	0	0	0	0	0	0	0	7434	1566	54	5		5	HS3ST4	16	25931794	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	14063812	25931794	64422959	761	75965											
ITGAD	3681	broad.mit.edu	37	chr16	31435742	31435742	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttgcggaacctgggaggCatctgggatggcatgaggcc	18	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31435742	T	T	31435742	1	4	62	0	1	0	0	0	0	0	0	0	7954	725	25	4		4	ITGAD	16	31435742	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5503948	31435742	58919011	762	75966											
PHKB	5257	broad.mit.edu	37	chr16	47715199	47715199	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagatgtctattaggtccActtggtgcagagctgagttc	12	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47715199	G	G	47715199	1	3	62	0	1	0	0	0	0	0	0	0	11940	174	6	5		5	PHKB	16	47715199	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	16279457	47715199	42639554	763	75967											
MT1E	4493	broad.mit.edu	37	chr16	56659760	56659760	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccagcatcccctttgctCgaaatggaccccaactgctc	7	17	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56659760	T	T	56659760	1	4	62	0	1	0	0	0	0	0	0	0	9993	899	31	4		4	MT1E	16	56659760	5'UTR	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8944561	56659760	33694993	764	75968											
CCDC135	84229	broad.mit.edu	37	chr16	57741439	57741439	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcctgggtccttgtgctatCggggaagcgcgaggtgcctg	16	11	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57741439	G	G	57741439	3	3	62	1	0	0	0	0	1	0	0	0	2795	893	31	4	948	4	CCDC135	16	57741439	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1081679	57741439	32613314	765	75969											
CDH16	1014	broad.mit.edu	37	chr16	66948486	66948486	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgagcctccaacaaggaCatgacagtttgcaaagccac	9	11	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66948486	T	T	66948486	1	4	62	0	1	0	0	0	0	0	0	0	3131	493	17	4		4	CDH16	16	66948486	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	9207047	66948486	23406267	766	75970											
AGRP	181	broad.mit.edu	37	chr16	67517006	67517006	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcagtggggcccgcagGcccaggcctggggcagagga	17	12	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67517006	C	C	67517006	2	2	62	1	0	0	0	0	0	0	0	1	398	1190	42	4		4	AGRP	16	67517006	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	568520	67517006	22837747	767	75971											
WWOX	51741	broad.mit.edu	37	chr16	78224301	78224301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaataaatcccgctttgtGctggagcaagttttggctga	10	8	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78224301	T	T	78224301	1	4	62	0	1	0	0	0	0	0	0	0	17541	1334	46	3		3	WWOX	16	78224301	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	10707295	78224301	12130452	768	75972											
ANKRD11	29123	broad.mit.edu	37	chr16	89341375	89341375	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atcagcttctcctgaaggagGagaggagtagagtgagctgg	16	6	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89341375	C	C	89341375	1	2	62	0	1	0	0	0	0	0	0	0	639	1189	41	4		4	ANKRD11	16	89341375	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	11117074	89341375	1013378	769	75973											
RPH3AL	9501	broad.mit.edu	37	chr17	200987	200987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctgggtggctgggttgCttgtccttggctatggccct	15	10	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200987	T	T	200987	1	4	62	0	1	0	0	0	0	0	0	0	13663	812	28	4		4	RPH3AL	17	200987	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		200987	80994223	770	75974											
RTN4RL1	146760	broad.mit.edu	37	chr17	1923360	1923360	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcataaggacccggagcTttgaggagcgcagcagccca	14	12	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1923360	G	G	1923360	1	3	62	0	1	0	0	0	0	0	0	0	13842	1624	56	5		5	RTN4RL1	17	1923360	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	1722373	1923360	79271850	771	75975											
TRPV3	162514	broad.mit.edu	37	chr17	3446988	3446988	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcaatctctccttttcccCgccagagctgcctacggggc	9	17	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3446988	T	T	3446988	1	4	62	0	1	0	0	0	0	0	0	0	16722	667	23	4		4	TRPV3	17	3446988	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1523628	3446988	77748222	772	75976											
MYH1	4619	broad.mit.edu	37	chr17	10417174	10417174	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattcctcacggtcttggcGttgccaaaggcctccagtag	10	13	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10417174	A	A	10417174	2	1	62	1	0	0	0	0	0	0	0	1	10123	1136	40	4		4	MYH1	17	10417174	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6970186	10417174	70778036	773	75977											
MYH3	4621	broad.mit.edu	37	chr17	10542452	10542452	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctccttccaatttcctttTgttcctttccaggtctactc	4	14	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10542452	A	A	10542452	4	1	62	1	0	0	0	0	0	1	0	0	10130	1821	63	5	2733	5	MYH3	17	10542452	Nonsense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	125278	10542452	70652758	774	75978											
DNAH9	1770	broad.mit.edu	37	chr17	11737947	11737947	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgataagtcccgtgcttctcCaatgcaggtggatgatctga	11	9	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11737947	T	T	11737947	1	4	62	0	1	0	0	0	0	0	0	0	4648	609	21	4		4	DNAH9	17	11737947	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1195495	11737947	69457263	775	75979											
SUPT6H	6830	broad.mit.edu	37	chr17	27000402	27000402	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccctagttatcttcaggcaGagtgagaagctgcagcaatg	11	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27000402	T	T	27000402	1	4	62	0	1	0	0	0	0	0	0	0	15518	957	33	3		3	SUPT6H	17	27000402	5'UTR	SNP	G	TCGA-17-Z032-01A-01W-0746-08	15262455	27000402	54194808	776	75980											
SSH2	85464	broad.mit.edu	37	chr17	27998795	27998795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggcaacagcaagaataGgattcttcatatgtggcaga	11	7	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27998795	A	A	27998795	1	1	62	0	1	0	0	0	0	0	0	0	15303	1015	35	4		4	SSH2	17	27998795	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	998393	27998795	53196415	777	75981											
SLC6A4	6532	broad.mit.edu	37	chr17	28537490	28537490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgtagcgttctgctgCcctaggggaggccaactcaa	11	13	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28537490	T	T	28537490	1	4	62	0	1	0	0	0	0	0	0	0	14800	754	26	4		4	SLC6A4	17	28537490	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	538695	28537490	52657720	778	75982											
BLMH	642	broad.mit.edu	37	chr17	28599790	28599790	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatggaggcagcaaccatcTttttcaggaagtcaatgggc	12	8	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28599790	A	A	28599790	3	1	62	1	0	0	0	0	1	0	0	0	1452	1609	56	5	458	5	BLMH	17	28599790	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	62300	28599790	52595420	779	75983											
ACCN1	40	broad.mit.edu	37	chr17	32334953	32334953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacataggaaggctcccccaCcccctccaacacacaaacat	4	18	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32334953	A	A	32334953	1	1	62	0	1	0	0	0	0	0	0	0	128	522	18	3		3	ACCN1	17	32334953	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3735163	32334953	48860257	780	75984											
MYO19	80179	broad.mit.edu	37	chr17	34871604	34871605	+	Intron	DNP	CC	AT	AT													cactcatcctccacccccacCcaagagagggtctcaaagca							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	34871605	AT	AT	34871604	1	1	62	0	1	0	0	0	0	0	0	0	10161	638	22	2		2	MYO19	17	34871604	Intron	DNP	CC	TCGA-17-Z032-01A-01W-0746-08	2536651	34871604	46323606	781	75985											
ZPBP2	124626	broad.mit.edu	37	chr17	38032838	38032838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtactgaaatggtatgatatTaaaggcagatttatattgtt	9	2	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38032838	C	C	38032838	1	2	62	0	1	0	0	0	0	0	0	0	18349	1769	61	5		5	ZPBP2	17	38032838	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3161234	38032838	43162372	782	75986											
DHX8	1659	broad.mit.edu	37	chr17	41572467	41572467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggattacaggcgtgagCcactgtgcccagcctattgt	13	11	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41572467	T	T	41572467	1	4	62	0	1	0	0	0	0	0	0	0	4555	754	26	4		4	DHX8	17	41572467	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3539629	41572467	39622743	783	75987											
EFTUD2	9343	broad.mit.edu	37	chr17	42945326	42945326	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcactatcactgatcccaagAggcattgtctaagtgctgaa	9	10	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42945326	C	C	42945326	1	2	62	0	1	0	0	0	0	0	0	0	5001	319	11	5		5	EFTUD2	17	42945326	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1372859	42945326	38249884	784	75988											
WNT9B	7484	broad.mit.edu	37	chr17	44950115	44950115	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggaactgtagcctggagGgcaggatgggcctgctcaag	17	9	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44950115	A	A	44950115	3	1	62	1	0	0	0	0	1	0	0	0	17526	1232	43	4	316	4	WNT9B	17	44950115	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2004789	44950115	36245095	785	75989											
TMEM49	81671	broad.mit.edu	37	chr17	57917037	57917038	+	Intron	INS	-	T	T													aattctttaggttttgtaagINSttacacacttcaagcattat							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57917038	T	T	57917037	6	5	62	0	1	1	1	0	0	0	0	0	16296	1044	36	0		0	TMEM49	17	57917037	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	12966922	57917037	23278173	786	75990											
DCAF7	10238	broad.mit.edu	37	chr17	61645450	61645450	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtgcagtggcgtgatctCagctcaccataacctccacc	10	14	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61645450	A	A	61645450	1	1	62	0	1	0	0	0	0	0	0	0	4308	841	29	3		3	DCAF7	17	61645450	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3728413	61645450	19549760	787	75991											
CCDC46	201134	broad.mit.edu	37	chr17	64010008	64010008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcagtgttggcatagcaGtggatttctggctggggtgg	19	5	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64010008	T	T	64010008	1	4	62	0	1	0	0	0	0	0	0	0	2845	1044	36	3		3	CCDC46	17	64010008	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2364558	64010008	17185202	788	75992											
WIPI1	55062	broad.mit.edu	37	chr17	66423293	66423293	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctggcaccgtggaggctGaagatgcacttggtctggct	14	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66423293	A	A	66423293	3	1	62	1	0	0	0	0	1	0	0	0	17497	1294	45	4	177	4	WIPI1	17	66423293	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2413285	66423293	14771917	789	75993											
ABCA9	10350	broad.mit.edu	37	chr17	66996112	66996112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcccactttttgatgggGttgtttgttttttctcgtaa	9	7	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66996112	T	T	66996112	1	4	62	0	1	0	0	0	0	0	0	0	39	1276	44	3		3	ABCA9	17	66996112	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	572819	66996112	14199098	790	75994											
ABCA10	10349	broad.mit.edu	37	chr17	67197867	67197867	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataccacaccaataaaaaggGacatctgtcctttacttgat	5	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67197867	A	A	67197867	1	1	62	0	1	0	0	0	0	0	0	0	29	1189	41	4		4	ABCA10	17	67197867	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	201755	67197867	13997343	791	75995											
TTYH2	94015	broad.mit.edu	37	chr17	72256305	72256305	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccacctacctgtctgtggCggatgagcacctgaggcact	12	13	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72256305	T	T	72256305	3	4	62	1	0	0	0	0	1	0	0	0	16866	768	27	4	1616	4	TTYH2	17	72256305	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	5058438	72256305	8938905	792	75996											
DNAI2	64446	broad.mit.edu	37	chr17	72281229	72281229	+	Frame_Shift_Del	DEL	G	-	-													cggggagttaaccatgtcgaGgggggctggcccaaggacgt					rs35985071	byFrequency	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72281229	-	-	72281229	7	5	62	1	0	1	0	1	0	0	0	0	4650	991	35	0	240	0	DNAI2	17	72281229	Frame_Shift_Del	DEL	G	TCGA-17-Z032-01A-01W-0746-08	24924	72281229	8913981	793	75997											
QRICH2	84074	broad.mit.edu	37	chr17	74276688	74276688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctcaaagaacagtcagCgagaccgccctgggacacag	11	13	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74276688	A	A	74276688	1	1	62	0	1	0	0	0	0	0	0	0	12988	783	27	3		3	QRICH2	17	74276688	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1995459	74276688	6918522	794	75998											
ENPP7	339221	broad.mit.edu	37	chr17	77707189	77707189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgccccaggcccactccCcacccagcacacagggaaac	7	22	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77707189	A	A	77707189	1	1	62	0	1	0	0	0	0	0	0	0	5177	638	22	2		2	ENPP7	17	77707189	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3430501	77707189	3488021	795	75999											
RPTOR	57521	broad.mit.edu	37	chr17	78539373	78539373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccccagggctgggaggCggagggaggcgtgcactgct	20	10	0	1	rs111466042		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78539373	T	T	78539373	1	4	62	0	1	0	0	0	0	0	0	0	13776	783	27	4		4	RPTOR	17	78539373	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	832184	78539373	2655837	796	76000											
MYOM1	8736	broad.mit.edu	37	chr18	3158693	3158693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatcatagttcccggtggCtttgacctcccaggctcaag	10	13	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3158693	A	A	3158693	1	1	62	0	1	0	0	0	0	0	0	0	10185	812	28	3		3	MYOM1	18	3158693	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		3158693	74918555	797	76001											
FAM38B	63895	broad.mit.edu	37	chr18	10857273	10857273	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctatccagccagcagattaTagagcttctaattcatgggt	8	10	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10857273	C	C	10857273	1	2	62	0	1	0	0	0	0	0	0	0	5606	1421	49	5		5	FAM38B	18	10857273	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	7698580	10857273	67219975	798	76002											
C18orf1	753	broad.mit.edu	37	chr18	13592278	13592278	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcataacccaatataaataCacacgtattgtaatgacaac	3	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13592278	G	G	13592278	1	3	62	0	1	0	0	0	0	0	0	0	1912	493	17	4		4	C18orf1	18	13592278	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2735005	13592278	64484970	799	76003											
LAMA3	3909	broad.mit.edu	37	chr18	21461809	21461809	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaagtcagaggacttgaGttgtagtcatgtgactaagt	12	5	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21461809	A	A	21461809	1	1	62	0	1	0	0	0	0	0	0	0	8679	1044	36	4		4	LAMA3	18	21461809	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	7869531	21461809	56615439	800	76004											
ZNF521	25925	broad.mit.edu	37	chr18	22847698	22847698	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagaaaagaaacagcatcaGtatcaacaaacaggatgtcc	7	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22847698	C	C	22847698	1	2	62	0	1	0	0	0	0	0	0	0	18092	1044	36	4		4	ZNF521	18	22847698	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1385889	22847698	55229550	801	76005											
DTNA	1837	broad.mit.edu	37	chr18	32364443	32364443	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatccttccctccttatcccCatctatgcactttctgctgt	3	16	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32364443	T	T	32364443	1	4	62	0	1	0	0	0	0	0	0	0	4828	609	21	4		4	DTNA	18	32364443	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	9516745	32364443	45712805	802	76006											
GALNT1	2589	broad.mit.edu	37	chr18	33187431	33187431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttccttgcatgcatgctGtagcataggattgggtgttg	15	6	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33187431	T	T	33187431	1	4	62	0	1	0	0	0	0	0	0	0	6269	1392	48	3		3	GALNT1	18	33187431	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	822988	33187431	44889817	803	76007											
KIAA1328	57536	broad.mit.edu	37	chr18	34599117	34599117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttctttaccttttcctgCcccctcctccccacccccct	1	22	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34599117	A	A	34599117	1	1	62	0	1	0	0	0	0	0	0	0	8295	754	26	3		3	KIAA1328	18	34599117	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1411686	34599117	43478131	804	76008											
MYO5B	4645	broad.mit.edu	37	chr18	47468105	47468105	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaggaagaatcaatatcgtGaaaatggccatactgcccaa	9	8	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47468105	T	T	47468105	1	4	62	0	1	0	0	0	0	0	0	0	10173	1305	45	3		3	MYO5B	18	47468105	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	12868988	47468105	30609143	805	76009											
MBD1	4152	broad.mit.edu	37	chr18	47803524	47803524	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgagatcacacgcagggCccaggtatcgagtcagctca	14	11	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47803524	T	T	47803524	3	4	62	1	0	0	0	0	1	0	0	0	9434	739	26	4	1906	4	MBD1	18	47803524	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	335419	47803524	30273724	806	76010											
PIGN	23556	broad.mit.edu	37	chr18	59714605	59714605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccacctccatgaagcaGtaatgaggtccctccccctc	6	17	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59714605	T	T	59714605	1	4	62	0	1	0	0	0	0	0	0	0	11988	1044	36	3		3	PIGN	18	59714605	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	11911081	59714605	18362643	807	76011											
PHLPP1	23239	broad.mit.edu	37	chr18	60645538	60645538	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtccacgcgcatcctggGctacaccttcctccatccca	7	18	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60645538	A	A	60645538	3	1	62	1	0	0	0	0	1	0	0	0	11949	1203	42	4	4094	4	PHLPP1	18	60645538	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	930933	60645538	17431710	808	76012											
SERPINB10	5273	broad.mit.edu	37	chr18	61600405	61600405	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacctcagcctgcttataCtactgccagaagacattaat	7	11	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61600405	T	T	61600405	2	4	62	1	0	0	0	0	0	0	0	1	14210	564	20	4		4	SERPINB10	18	61600405	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	954867	61600405	16476843	809	76013											
CCDC102B	79839	broad.mit.edu	37	chr18	66480510	66480510	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgccatgattgtacgcttCctgaggcctccccagtcatg	9	14	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66480510	A	A	66480510	1	1	62	0	1	0	0	0	0	0	0	0	2763	870	30	3		3	CCDC102B	18	66480510	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4880105	66480510	11596738	810	76014											
ZNF407	55628	broad.mit.edu	37	chr18	72343705	72343705	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatgggccacagaaggtcTtttcctgtgatctttgtggt	11	9	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72343705	G	G	72343705	3	3	62	1	0	0	0	0	1	0	0	0	18014	1609	56	5	732	5	ZNF407	18	72343705	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	5863195	72343705	5733543	811	76015											
ZNF407	55628	broad.mit.edu	37	chr18	72755389	72755389	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agatatttggaggctgttttCctgtccttatttccacccct	7	11	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72755389	T	T	72755389	1	4	62	0	1	0	0	0	0	0	0	0	18014	870	30	4		4	ZNF407	18	72755389	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	411684	72755389	5321859	812	76016											
DOT1L	84444	broad.mit.edu	37	chr19	2210653	2210653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagagaaggcgggagcaGccaccgtgaagaagccgtct	16	9	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2210653	T	T	2210653	3	4	62	1	0	0	0	0	1	0	0	0	4749	971	34	3	1204	3	DOT1L	19	2210653	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08		2210653	56918330	813	76017											
SAFB	6294	broad.mit.edu	37	chr19	5667041	5667041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcttttttttcccttctgGctctgtgatgtccagcatta	7	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5667041	T	T	5667041	1	4	62	0	1	0	0	0	0	0	0	0	13917	1218	42	3		3	SAFB	19	5667041	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3456388	5667041	53461942	814	76018											
FBXL12	54850	broad.mit.edu	37	chr19	9931160	9931160	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaatgtgctgccccccctAttaatactcaccaataaatt	3	14	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9931160	C	C	9931160	1	2	62	0	1	0	0	0	0	0	0	0	5765	464	16	5		5	FBXL12	19	9931160	5'Flank	SNP	A	TCGA-17-Z032-01A-01W-0746-08	4264119	9931160	49197823	815	76019											
MAST1	22983	broad.mit.edu	37	chr19	12978183	12978183	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattgggcggagccaggcctCggagggtggagtgcgttttg	19	7	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12978183	A	A	12978183	1	1	62	0	1	0	0	0	0	0	0	0	9416	899	31	3		3	MAST1	19	12978183	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3047023	12978183	46150800	816	76020											
NFIX	4784	broad.mit.edu	37	chr19	13126348	13126348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtatcccagtgggtgcCcattctccctttgggaaccc	10	14	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13126348	A	A	13126348	1	1	62	0	1	0	0	0	0	0	0	0	10469	638	22	2		2	NFIX	19	13126348	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	148165	13126348	46002635	817	76021											
CACNA1A	773	broad.mit.edu	37	chr19	13325397	13325397	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctccttccgcagctcagcGtccatctgctgtttgtcggc	9	15	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13325397	A	A	13325397	2	1	62	1	0	0	0	0	0	0	0	1	2564	1136	40	4		4	CACNA1A	19	13325397	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	199049	13325397	45803586	818	76022											
CACNA1A	773	broad.mit.edu	37	chr19	13339481	13339481	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaagccacactcattccaTggatgctagcaggttttagt	8	12	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13339481	C	C	13339481	1	2	62	0	1	0	0	0	0	0	0	0	2564	1479	51	5		5	CACNA1A	19	13339481	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	14084	13339481	45789502	819	76023											
RASAL3	64926	broad.mit.edu	37	chr19	15572099	15572099	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacttcccacccggggcctTcgaggaccctgttctcccgc	10	19	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15572099	C	C	15572099	2	2	62	1	0	0	0	0	0	0	0	1	13173	1770	62	5		5	RASAL3	19	15572099	Silent	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2232618	15572099	43556884	820	76024											
BST2	684	broad.mit.edu	37	chr19	17515102	17515102	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccttaccccaacctccagCcctggtctccctgcccccac	4	25	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17515102	T	T	17515102	1	4	62	0	1	0	0	0	0	0	0	0	1543	754	26	4		4	BST2	19	17515102	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1943003	17515102	41613881	821	76025											
ZNF14	7561	broad.mit.edu	37	chr19	19822504	19822504	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcttacactcaaaaggcTtatttccagtgtgaattttt	6	7	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19822504	A	A	19822504	3	1	62	1	0	0	0	0	1	0	0	0	17854	1609	56	5	346	5	ZNF14	19	19822504	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2307402	19822504	39306479	822	76026											
ZNF257	113835	broad.mit.edu	37	chr19	22271775	22271775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgatgaatattgcaaagCttttaactggtcctcagctc	8	8	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22271775	A	A	22271775	3	1	62	1	0	0	0	0	1	0	0	0	17926	797	28	3	1237	3	ZNF257	19	22271775	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2449271	22271775	36857208	823	76027											
ZNF98	148198	broad.mit.edu	37	chr19	22574562	22574562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctttgccacattcttcaCatttgtagggcttctctcca	6	12	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22574562	A	A	22574562	3	1	62	1	0	0	0	0	1	0	0	0	18332	478	17	3	247	3	ZNF98	19	22574562	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	302787	22574562	36554421	824	76028											
TSHZ3	57616	broad.mit.edu	37	chr19	31770628	31770628	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaccttcgtccaccaggGcagcagcctttaactcttcg	7	15	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31770628	A	A	31770628	3	1	62	1	0	0	0	0	1	0	0	0	16750	1203	42	4	3178	4	TSHZ3	19	31770628	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	9196066	31770628	27358355	825	76029											
UBA2	10054	broad.mit.edu	37	chr19	34925867	34925867	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggacaagtaactactatCaaaaaggtaaagaaaagttt	7	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34925867	G	G	34925867	3	3	62	1	0	0	0	0	1	0	0	0	16954	816	29	4	471	4	UBA2	19	34925867	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3155239	34925867	24203116	826	76030											
ZNF461	92283	broad.mit.edu	37	chr19	37129906	37129906	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaacactgtctaaaagtcttCccacattccttacactcata	3	13	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37129906	T	T	37129906	2	4	62	1	0	0	0	0	0	0	0	1	18052	842	30	4		4	ZNF461	19	37129906	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2204039	37129906	21999077	827	76031											
ZNF567	163081	broad.mit.edu	37	chr19	37210537	37210537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcatcagagaactcacaCaggagagaaaccctttgttt	8	9	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37210537	T	T	37210537	3	4	62	1	0	0	0	0	1	0	0	0	18125	478	17	4	828	4	ZNF567	19	37210537	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	80631	37210537	21918446	828	76032											
PSG8	440533	broad.mit.edu	37	chr19	43258352	43258352	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagacaaatttggagggtttAggaggagaatttgggatttg	15	1	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43258352	T	T	43258352	1	4	62	0	1	0	0	0	0	0	0	0	12767	435	15	5		5	PSG8	19	43258352	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	6047815	43258352	15870631	829	76033											
PSG6	5675	broad.mit.edu	37	chr19	43528319	43528319	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagccctggctggtgaacAgctccaggagacacagtcct	12	13	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43528319	G	G	43528319	1	3	62	0	1	0	0	0	0	0	0	0	12765	203	7	5		5	PSG6	19	43528319	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	269967	43528319	15600664	830	76034											
PSG6	5675	broad.mit.edu	37	chr19	43532011	43532011	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggagcaggggtgggcatTtagggagcagtgacagaaag	19	4	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43532011	C	C	43532011	1	2	62	0	1	0	0	0	0	0	0	0	12765	1856	64	5		5	PSG6	19	43532011	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3692	43532011	15596972	831	76035											
MEIS3	56917	broad.mit.edu	37	chr19	47910197	47910197	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggtatagcccccgatgggCtggccctctgggctgaaggc	15	13	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47910197	T	T	47910197	2	4	62	1	0	0	0	0	0	0	0	1	9562	796	28	4		4	MEIS3	19	47910197	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4378186	47910197	11218786	832	76036											
TMEM143	55260	broad.mit.edu	37	chr19	48842295	48842295	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcgcagattcgaggggaAggattgtgtccagtgaggct	18	6	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48842295	G	G	48842295	1	3	62	0	1	0	0	0	0	0	0	0	16180	87	3	5		5	TMEM143	19	48842295	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	932098	48842295	10286688	833	76037											
PPFIA3	8541	broad.mit.edu	37	chr19	49637507	49637507	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccccaggcctttccctcaGatctgttatcggaggcctcc	10	16	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49637507	C	C	49637507	1	2	62	0	1	0	0	0	0	0	0	0	12407	957	33	4		4	PPFIA3	19	49637507	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	795212	49637507	9491476	834	76038											
PPP2R1A	5518	broad.mit.edu	37	chr19	52723581	52723581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctggggctgtggcgggCagtggaggaggctagagtca	21	6	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52723581	A	A	52723581	1	1	62	0	1	0	0	0	0	0	0	0	12483	725	25	3		3	PPP2R1A	19	52723581	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3086074	52723581	6405402	835	76039											
ZNF320	162967	broad.mit.edu	37	chr19	53396151	53396151	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctccctcactctgatgagActccctctttgctgtccctc	5	18	4	2	rs112591593	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53396151	C	C	53396151	1	2	62	0	1	0	0	0	0	0	0	0	17965	290	10	5		5	ZNF320	19	53396151	5'Flank	SNP	A	TCGA-17-Z032-01A-01W-0746-08	672570	53396151	5732832	836	76040											
CACNG8	59283	broad.mit.edu	37	chr19	54466466	54466466	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggggtgcaggtgctgctgAcgacggtgggcgccttcgcc	19	11	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54466466	T	T	54466466	3	4	62	1	0	0	0	0	1	0	0	0	2589	275	10	5	72	5	CACNG8	19	54466466	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1070315	54466466	4662517	837	76041											
LILRB1	10859	broad.mit.edu	37	chr19	55144077	55144077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctggcgcacagccccaggCtgggctctcccaggccaact	12	18	1	0	rs61737881		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55144077	A	A	55144077	3	1	62	1	0	0	0	0	1	0	0	0	8862	797	28	3	842	3	LILRB1	19	55144077	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	677611	55144077	3984906	838	76042											
ZIM2	23619	broad.mit.edu	37	chr19	57286907	57286907	+	Intron	SNP	C	T	T													atgagactctcctgcagagaCaatgccagaagttacctacc							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57286907	T	T	57286907	1	4	62	0	1	0	0	0	0	0	0	0	17810	493	17	4		4	ZIM2	19	57286907	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2142830	57286907	1842076	839	76043	343	2									
ZIM2	23619	broad.mit.edu	37	chr19	57286909	57286909	+	Intron	SNP	A	T	T													gagactctcctgcagagacaAtgccagaagttacctaccgc							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57286909	T	T	57286909	1	4	62	0	1	0	0	0	0	0	0	0	17810	116	4	5		5	ZIM2	19	57286909	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2	57286909	1842074	840	76044	343	2									
ZNF419	79744	broad.mit.edu	37	chr19	58002982	58002983	+	Intron	DNP	CC	AA	AA													ctgggtaaggttctcacaccCcaccccagcatcctgagctg							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	58002983	AA	AA	58002982	1	1	62	0	1	0	0	0	0	0	0	0	18023	638	22	2		2	ZNF419	19	58002982	Intron	DNP	CC	TCGA-17-Z032-01A-01W-0746-08	716073	58002982	1126001	841	76045											
ZNF154	7710	broad.mit.edu	37	chr19	58213862	58213862	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctgtagtgagggttctcTgctgctgaacaagtgtgtgt	13	6	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58213862	A	A	58213862	3	1	62	1	0	0	0	0	1	0	0	0	17861	1580	55	5	862	5	ZNF154	19	58213862	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	210880	58213862	915121	842	76046											
ZSCAN18	65982	broad.mit.edu	37	chr19	58601464	58601464	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggcccggcagcctcctgGtagacaaattcccggaaacg	13	13	0	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58601464	A	A	58601464	2	1	62	1	0	0	0	0	0	0	0	1	18359	1256	44	4		4	ZSCAN18	19	58601464	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08	387602	58601464	527519	843	76047											
MCM8	84515	broad.mit.edu	37	chr20	5967729	5967729	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatcctcccacctcagccTcccaaagtgctgggtttata	8	14	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5967729	C	C	5967729	1	2	62	0	1	0	0	0	0	0	0	0	9486	1566	54	5		5	MCM8	20	5967729	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08		5967729	57057791	844	76048											
HAO1	54363	broad.mit.edu	37	chr20	7876484	7876484	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggcagatcacgaggtcaGgagttcaagactagcctgac	14	10	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7876484	A	A	7876484	1	1	62	0	1	0	0	0	0	0	0	0	7017	1015	35	4		4	HAO1	20	7876484	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1908755	7876484	55149036	845	76049											
MACROD2	140733	broad.mit.edu	37	chr20	14643149	14643149	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatgtgagctaattaaacTaaaggccttctgtacagcaa	7	8	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14643149	C	C	14643149	1	2	62	0	1	0	0	0	0	0	0	0	9234	1537	53	5		5	MACROD2	20	14643149	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	6766665	14643149	48382371	846	76050											
MACROD2	140733	broad.mit.edu	37	chr20	14898304	14898304	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaacagcaataacattgAgaataggaagctcatcatgg	8	7	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14898304	T	T	14898304	1	4	62	0	1	0	0	0	0	0	0	0	9234	319	11	5		5	MACROD2	20	14898304	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	255155	14898304	48127216	847	76051											
MACROD2	140733	broad.mit.edu	37	chr20	15260132	15260132	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaattcattgtccacacatCaattaataatgcaataccag	4	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15260132	T	T	15260132	1	4	62	0	1	0	0	0	0	0	0	0	9234	841	29	4		4	MACROD2	20	15260132	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	361828	15260132	47765388	848	76052											
MACROD2	140733	broad.mit.edu	37	chr20	15586125	15586125	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtatcagtgttgg	19	1	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15586125	A	A	15586125	1	1	62	0	1	0	0	0	0	0	0	0	9234	1392	48	4		4	MACROD2	20	15586125	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	325993	15586125	47439395	849	76053											
VSTM2L	128434	broad.mit.edu	37	chr20	36569853	36569853	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgttgacgaaagagcccTccccagggcagattggtaag	15	9	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36569853	C	C	36569853	1	2	62	0	1	0	0	0	0	0	0	0	17357	1566	54	5		5	VSTM2L	20	36569853	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	20983728	36569853	26455667	850	76054											
PTPRT	11122	broad.mit.edu	37	chr20	41050220	41050220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgggggaggagagcagaCagtgctcatggataagacga	17	5	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41050220	A	A	41050220	1	1	62	0	1	0	0	0	0	0	0	0	12920	493	17	3		3	PTPRT	20	41050220	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4480367	41050220	21975300	851	76055											
L3MBTL	26013	broad.mit.edu	37	chr20	42157229	42157229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggtagagcttggtcaGgggaagccgaagaaagtcat	16	5	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42157229	T	T	42157229	1	4	62	0	1	0	0	0	0	0	0	0	8663	1015	35	2		2	L3MBTL	20	42157229	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1107009	42157229	20868291	852	76056											
ELMO2	63916	broad.mit.edu	37	chr20	45017995	45017995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacacagcttaggagttgCtaaataaatgtttgtggaat	9	5	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45017995	A	A	45017995	1	1	62	0	1	0	0	0	0	0	0	0	5108	812	28	3		3	ELMO2	20	45017995	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2860766	45017995	18007525	853	76057											
SULF2	55959	broad.mit.edu	37	chr20	46360235	46360235	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcagtcaccgtgcctggCctgtttagggagcaaaaaat	11	10	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46360235	T	T	46360235	1	4	62	0	1	0	0	0	0	0	0	0	15489	754	26	4		4	SULF2	20	46360235	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1342240	46360235	16665285	854	76058											
PREX1	57580	broad.mit.edu	37	chr20	47292842	47292842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcacagtgagcagggcagGgcggggaggacagaggtggg	23	7	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47292842	T	T	47292842	1	4	62	0	1	0	0	0	0	0	0	0	12582	1247	43	2		2	PREX1	20	47292842	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	932607	47292842	15732678	855	76059											
ARFGEF2	10564	broad.mit.edu	37	chr20	47606011	47606011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagcaagcatgtggctaagCctgattctgaagctggccag	12	9	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47606011	T	T	47606011	1	4	62	0	1	0	0	0	0	0	0	0	855	754	26	4		4	ARFGEF2	20	47606011	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	313169	47606011	15419509	856	76060											
DOK5	55816	broad.mit.edu	37	chr20	53171696	53171696	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagcaatatcttttccaagGacaaaacacccctaaaataa	3	11	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53171696	T	T	53171696	1	4	62	0	1	0	0	0	0	0	0	0	4740	1189	41	3		3	DOK5	20	53171696	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5565685	53171696	9853824	857	76061											
BMP7	655	broad.mit.edu	37	chr20	55800333	55800333	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatttgcaagctcagggctTtgttcctactggaagattgc	11	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55800333	G	G	55800333	1	3	62	0	1	0	0	0	0	0	0	0	1471	1856	64	5		5	BMP7	20	55800333	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2628637	55800333	7225187	858	76062											
PHACTR3	116154	broad.mit.edu	37	chr20	58261807	58261807	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtggtgatgatggtgatgAtgatggtgatgatgatggtg	19	0	0	8			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58261807	G	G	58261807	1	3	62	0	1	0	0	0	0	0	0	0	11906	348	12	5		5	PHACTR3	20	58261807	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	2461474	58261807	4763713	859	76063											
CDH4	1002	broad.mit.edu	37	chr20	59871327	59871336	+	Intron	DEL	GTGTGCGTGG	-	-													gtgcatgtgtgcgtgtgtgtGtgtgcgtgggtgcgtgtgtg					rs147618869	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59871336	-	-	59871327	6	5	62	0	1	1	0	1	0	0	0	0	3142	1392	48	0		0	CDH4	20	59871327	Intron	DEL	GTGTGCGTGG	TCGA-17-Z032-01A-01W-0746-08	1609520	59871327	3154193	860	76064											
TPTE	7179	broad.mit.edu	37	chr21	10937633	10937633	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatcagatccacagcccTggtggcatgggctcacaagg	13	11	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10937633	A	A	10937633	1	1	62	0	1	0	0	0	0	0	0	0	16554	1595	55	5		5	TPTE	21	10937633	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08		10937633	37192262	861	76065											
BAGE2	85319	broad.mit.edu	37	chr21	11064649	11064649	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacactgttgctatctttGaagataaaaagagccaggag	9	6	1	3	rs76731709		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11064649	C	C	11064649	1	2	62	0	1	0	0	0	0	0	0	0	1297	1305	45	4		4	BAGE2	21	11064649	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	127016	11064649	37065246	862	76066											
DSCAM	1826	broad.mit.edu	37	chr21	42055246	42055246	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgatcttgaagtagtgaAtttcagtagattgtaacagg	13	3	2	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42055246	T	T	42055246	1	4	62	0	1	0	0	0	0	0	0	0	4808	116	4	5		5	DSCAM	21	42055246	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	30990597	42055246	6074649	863	76067											
UBASH3A	53347	broad.mit.edu	37	chr21	43858263	43858263	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttgtctgggaagagGgataagatctcggtccccag	12	10	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43858263	A	A	43858263	1	1	62	0	1	0	0	0	0	0	0	0	16965	1247	43	4		4	UBASH3A	21	43858263	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1803017	43858263	4271632	864	76068											
MICAL3	57553	broad.mit.edu	37	chr22	18387316	18387316	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtggcatatgaattcctCagctaatctgcctgtctctt	9	10	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18387316	T	T	18387316	1	4	62	0	1	0	0	0	0	0	0	0	9664	841	29	4		4	MICAL3	22	18387316	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08		18387316	32917250	865	76069											
DGCR2	9993	broad.mit.edu	37	chr22	19044613	19044613	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctgggcacagaacacgtTgtcgttctcagacatggccg	12	11	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19044613	A	A	19044613	3	1	62	1	0	0	0	0	1	0	0	0	4501	1812	63	5	984	5	DGCR2	22	19044613	Missense_Mutation	SNP	T	TCGA-17-Z032-01A-01W-0746-08	657297	19044613	32259953	866	76070											
TOM1	10043	broad.mit.edu	37	chr22	35719897	35719897	+	Frame_Shift_Del	DEL	C	-	-													tgacacgcccatagcaccaaCcccggaacaggtaaacgagc							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35719897	-	-	35719897	7	5	62	1	0	1	0	1	0	0	0	0	16474	507	18	0	660	0	TOM1	22	35719897	Frame_Shift_Del	DEL	C	TCGA-17-Z032-01A-01W-0746-08	16675284	35719897	15584669	867	76071											
EFCAB6	64800	broad.mit.edu	37	chr22	44075091	44075091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtctctagatatttgCctttttctggatatttcatg	6	7	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44075091	T	T	44075091	1	4	62	0	1	0	0	0	0	0	0	0	4979	754	26	4		4	EFCAB6	22	44075091	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	8355194	44075091	7229475	868	76072											
SMC1B	27127	broad.mit.edu	37	chr22	45758654	45758654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaagtatttcttaaatctGtccccaaccccttcactaac	2	13	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45758654	T	T	45758654	1	4	62	0	1	0	0	0	0	0	0	0	14896	1392	48	3		3	SMC1B	22	45758654	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1683563	45758654	5545912	869	76073											
TBC1D22A	25771	broad.mit.edu	37	chr22	47466058	47466058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggttggagcagggctgacCtgacggtcctggctgttccc	15	11	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47466058	A	A	47466058	1	1	62	0	1	0	0	0	0	0	0	0	15730	696	24	2		2	TBC1D22A	22	47466058	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	1707404	47466058	3838508	870	76074											
TUBGCP6	85378	broad.mit.edu	37	chr22	50660228	50660228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgttccagccatcccaggCaggcgagtgttgctctgcag	12	14	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50660228	A	A	50660228	3	1	62	1	0	0	0	0	1	0	0	0	16896	710	25	3	2939	3	TUBGCP6	22	50660228	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3194170	50660228	644338	871	76075											
ZBED1	9189	broad.mit.edu	37	chrX	2407351	2407351	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtccaggaaggtggccacGttgagaaacatgtcgatctc	14	9	1	1	rs141520513		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2407351	A	A	2407351	2	1	62	1	0	0	0	0	0	0	0	1	17644	1136	40	4		4	ZBED1	23	2407351	Silent	SNP	G	TCGA-17-Z032-01A-01W-0746-08		2407351	152863209	872	76076											
NLGN4X	57502	broad.mit.edu	37	chrX	5811257	5811257	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgttgaggaagaggagCgacgccccgacggcaatggt	16	8	0	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5811257	A	A	5811257	2	1	62	1	0	0	0	0	0	0	0	1	10559	755	27	3		3	NLGN4X	23	5811257	Silent	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3403906	5811257	149459303	873	76077											
NLGN4X	57502	broad.mit.edu	37	chrX	5811550	5811550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttccaaccagaaagccaCtttcgttgcccggtagtgat	10	11	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5811550	A	A	5811550	3	1	62	1	0	0	0	0	1	0	0	0	10559	565	20	3	695	3	NLGN4X	23	5811550	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	293	5811550	149459010	874	76078											
FRMPD4	9758	broad.mit.edu	37	chrX	12708488	12708488	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgaggctgcaggttagAgcagaggttgcccagtccaa	15	8	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12708488	G	G	12708488	1	3	62	0	1	0	0	0	0	0	0	0	6119	319	11	5		5	FRMPD4	23	12708488	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	6896938	12708488	142562072	875	76079											
MOSPD2	158747	broad.mit.edu	37	chrX	14930347	14930347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttaatatatgctaaataGttatcctttttttttgtctt	4	4	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14930347	T	T	14930347	1	4	62	0	1	0	0	0	0	0	0	0	9810	1044	36	3		3	MOSPD2	23	14930347	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2221859	14930347	140340213	876	76080											
PIR	8544	broad.mit.edu	37	chrX	15456853	15456853	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctagccgactgtcaagtTctgacatcgtcttgattgtc	9	11	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15456853	C	C	15456853	1	2	62	0	1	0	0	0	0	0	0	0	12039	1798	62	5		5	PIR	23	15456853	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	526506	15456853	139813707	877	76081											
NHS	4810	broad.mit.edu	37	chrX	17720801	17720801	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtgacagagtgagactgTctcaaaacgaaaacaaaaac	9	7	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17720801	C	C	17720801	1	2	62	0	1	0	0	0	0	0	0	0	10506	1682	58	5		5	NHS	23	17720801	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2263948	17720801	137549759	878	76082											
MAP7D2	256714	broad.mit.edu	37	chrX	20034541	20034542	+	Intron	INS	-	AC	AC													gaataatgctccacatggtaINSacacacacacatacctttca							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	20034542	AC	AC	20034541	6	5	62	0	1	1	1	0	0	0	0	0	9360	377	13	0		0	MAP7D2	23	20034541	Intron	INS	-	TCGA-17-Z032-01A-01W-0746-08	2313740	20034541	135236019	879	76083											
PHEX	5251	broad.mit.edu	37	chrX	22155801	22155801	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcattagagatgcaaatttTcacatccccacctgctgagc	6	13	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22155801	C	C	22155801	1	2	62	0	1	0	0	0	0	0	0	0	11914	1798	62	5		5	PHEX	23	22155801	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	2121260	22155801	133114759	880	76084											
POLA1	5422	broad.mit.edu	37	chrX	24781395	24781395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaagtatcagtaaaactGggtggtatattggatgtggg	14	2	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24781395	T	T	24781395	1	4	62	0	1	0	0	0	0	0	0	0	12282	1363	47	2		2	POLA1	23	24781395	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2625594	24781395	130489165	881	76085											
DMD	1756	broad.mit.edu	37	chrX	32475359	32475359	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgaattcactgatgacccTgacaaaatctgctttaatag	6	9	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32475359	C	C	32475359	1	2	62	0	1	0	0	0	0	0	0	0	4620	1595	55	5		5	DMD	23	32475359	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	7693964	32475359	122795201	882	76086											
FAM47B	170062	broad.mit.edu	37	chrX	34961804	34961804	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcgtcccatctctgcccgGagcctcccgagactcgcgta	11	17	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961804	T	T	34961804	4	4	62	1	0	0	0	0	0	1	0	0	5621	1175	41	3	858	3	FAM47B	23	34961804	Nonsense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2486445	34961804	120308756	883	76087											
CXorf22	170063	broad.mit.edu	37	chrX	35993678	35993678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataattaaagtattacgtGctaagaattgtggatgttaa	8	3	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35993678	T	T	35993678	1	4	62	0	1	0	0	0	0	0	0	0	4135	1334	46	3		3	CXorf22	23	35993678	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1031874	35993678	119276882	884	76088											
TSPAN7	7102	broad.mit.edu	37	chrX	38515467	38515467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggatttattccttccCcacatgactcttaaaatctt	5	10	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38515467	T	T	38515467	1	4	62	0	1	0	0	0	0	0	0	0	16777	638	22	4		4	TSPAN7	23	38515467	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2521789	38515467	116755093	885	76089											
EFHC2	80258	broad.mit.edu	37	chrX	44182879	44182879	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagccttaaatagcaaaatcAgacacttaaacaacatctta	4	9	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44182879	C	C	44182879	1	2	62	0	1	0	0	0	0	0	0	0	4987	203	7	5		5	EFHC2	23	44182879	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	5667412	44182879	111087681	886	76090											
SLC9A7	84679	broad.mit.edu	37	chrX	46506027	46506027	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtagtctgtccgctggcCtttacctcttttctttatcc	6	12	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46506027	T	T	46506027	1	4	62	0	1	0	0	0	0	0	0	0	14833	696	24	4		4	SLC9A7	23	46506027	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2323148	46506027	108764533	887	76091											
GATA1	2623	broad.mit.edu	37	chrX	48650256	48650256	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctgcccccaacagtctttCaggtgtacccattgctcaac	6	16	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48650256	G	G	48650256	3	3	62	1	0	0	0	0	1	0	0	0	6315	827	29	4	232	4	GATA1	23	48650256	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2144229	48650256	106620304	888	76092											
GAGE12J	729396	broad.mit.edu	37	chrX	49201171	49201171	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttattaatgctgaattgtCtcgataaagtttcaggtatt	8	4	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49201171	T	T	49201171	1	4	62	0	1	0	0	0	0	0	0	0	6249	928	32	4		4	GAGE12J	23	49201171	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	550915	49201171	106069389	889	76093											
GAGE12J	729396	broad.mit.edu	37	chrX	49239303	49239303	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtctcgataaagtttcaggGattatggtcctttaccctat	8	8	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49239303	T	T	49239303	1	4	62	0	1	0	0	0	0	0	0	0	6249	1189	41	3		3	GAGE12J	23	49239303	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	38132	49239303	106031257	890	76094											
MTMR8	55613	broad.mit.edu	37	chrX	63545808	63545808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtcagacccttgcacaCtggaaaatcaatatataagt	7	8	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63545808	A	A	63545808	1	1	62	0	1	0	0	0	0	0	0	0	10043	580	20	3		3	MTMR8	23	63545808	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	14306505	63545808	91724752	891	76095											
MTMR8	55613	broad.mit.edu	37	chrX	63584429	63584429	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaggaaaagtaacaaacAgaaaggaatagcatcatcat	8	5	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63584429	G	G	63584429	1	3	62	0	1	0	0	0	0	0	0	0	10043	203	7	5		5	MTMR8	23	63584429	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	38621	63584429	91686131	892	76096											
AR	367	broad.mit.edu	37	chrX	66808258	66808258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaaggaaatatgacaagCgctgaggccatgcaggccag	13	8	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66808258	A	A	66808258	1	1	62	0	1	0	0	0	0	0	0	0	838	783	27	3		3	AR	23	66808258	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3223829	66808258	88462302	893	76097											
TEX11	56159	broad.mit.edu	37	chrX	70058636	70058636	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatcgggtcactcccacccTaatactgcgcttttccaacg	6	15	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70058636	A	A	70058636	1	1	62	0	1	0	0	0	0	0	0	0	15896	1537	53	5		5	TEX11	23	70058636	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	3250378	70058636	85211924	894	76098											
NHSL2	340527	broad.mit.edu	37	chrX	71162834	71162834	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctctgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	16	5	2	0	rs112640366		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71162834	C	C	71162834	1	2	62	0	1	0	0	0	0	0	0	0	10507	1392	48	4		4	NHSL2	23	71162834	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1104198	71162834	84107726	895	76099											
PHKA1	5255	broad.mit.edu	37	chrX	71925130	71925130	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaagacagttataaacAtccctagatacaggaacact	6	9	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71925130	T	T	71925130	1	4	62	0	1	0	0	0	0	0	0	0	11938	232	8	5		5	PHKA1	23	71925130	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	762296	71925130	83345430	896	76100											
ATRX	546	broad.mit.edu	37	chrX	76851139	76851139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaatgaaaatcaaagctgCtagtctcaagactagcatct	6	8	3	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76851139	A	A	76851139	1	1	62	0	1	0	0	0	0	0	0	0	1212	812	28	3		3	ATRX	23	76851139	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4926009	76851139	78419421	897	76101											
POF1B	79983	broad.mit.edu	37	chrX	84534535	84534535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaattggtatgtataaaAccaaaggacatgtattgcac	7	5	0	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84534535	T	T	84534535	1	4	62	0	1	0	0	0	0	0	0	0	12277	58	2	5		5	POF1B	23	84534535	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	7683396	84534535	70736025	898	76102											
POF1B	79983	broad.mit.edu	37	chrX	84560745	84560745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaagccatcattatcttGctagaaagtttgtgctgacc	8	9	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84560745	T	T	84560745	1	4	62	0	1	0	0	0	0	0	0	0	12277	1334	46	3		3	POF1B	23	84560745	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	26210	84560745	70709815	899	76103											
CHM	1121	broad.mit.edu	37	chrX	85121467	85121467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggggtagagccctcatGgagaacctctgctagggcag	15	10	2	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85121467	T	T	85121467	1	4	62	0	1	0	0	0	0	0	0	0	3381	1363	47	2		2	CHM	23	85121467	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	560722	85121467	70149093	900	76104											
KLHL4	56062	broad.mit.edu	37	chrX	86887308	86887308	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttggagtcgcagttattGataataagctctatgtcgtg	10	5	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86887308	C	C	86887308	3	2	62	1	0	0	0	0	1	0	0	0	8462	1290	45	4	1449	4	KLHL4	23	86887308	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1765841	86887308	68383252	901	76105											
KLHL4	56062	broad.mit.edu	37	chrX	86887478	86887478	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaagaatgtatagtaagTagagtttttaaaaattaaat	6	1	1	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86887478	C	C	86887478	1	2	62	0	1	0	0	0	0	0	0	0	8462	1653	57	5		5	KLHL4	23	86887478	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	170	86887478	68383082	902	76106											
FAM133A	286499	broad.mit.edu	37	chrX	92964563	92964563	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaagtaaagaaacaattaGaaaataaaaaaacaggttca	6	3	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92964563	C	C	92964563	3	2	62	1	0	0	0	0	1	0	0	0	5489	943	33	4	147	4	FAM133A	23	92964563	Missense_Mutation	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6077085	92964563	62305997	903	76107											
RAB9B	51209	broad.mit.edu	37	chrX	103084149	103084149	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctctttcttccatatttGagaatgccttgttcctcaac	4	11	3	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103084149	A	A	103084149	1	1	62	0	1	0	0	0	0	0	0	0	13067	1305	45	4		4	RAB9B	23	103084149	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	10119586	103084149	52186411	904	76108											
IL1RAPL2	26280	broad.mit.edu	37	chrX	103824963	103824963	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccactatgtcaccttctaTatagacatctgtgttctgtc	5	12	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103824963	C	C	103824963	1	2	62	0	1	0	0	0	0	0	0	0	7732	1421	49	5		5	IL1RAPL2	23	103824963	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	740814	103824963	51445597	905	76109											
VSIG1	340547	broad.mit.edu	37	chrX	107320239	107320239	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaatttcaaagttagcatCtccctaacttgttcttttct	4	9	4	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107320239	G	G	107320239	1	3	62	0	1	0	0	0	0	0	0	0	17349	928	32	4		4	VSIG1	23	107320239	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3495276	107320239	47950321	906	76110											
HTR2C	3358	broad.mit.edu	37	chrX	113887261	113887261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggagagaagaaatataaGgagaatgcacaagtgatcgc	13	4	0	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113887261	A	A	113887261	1	1	62	0	1	0	0	0	0	0	0	0	7513	1015	35	4		4	HTR2C	23	113887261	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	6567022	113887261	41383299	907	76111											
LRCH2	57631	broad.mit.edu	37	chrX	114447512	114447512	+	Intron	SNP	A	C	C													ccactgcactccagcctgggAgacagagcaagaccttgtct							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114447512	C	C	114447512	1	2	62	0	1	0	0	0	0	0	0	0	9020	319	11	5		5	LRCH2	23	114447512	Intron	SNP	A	TCGA-17-Z032-01A-01W-0746-08	560251	114447512	40823048	908	76112	344	2									
LRCH2	57631	broad.mit.edu	37	chrX	114447517	114447517	+	Intron	SNP	G	A	A													gcactccagcctgggagacaGagcaagaccttgtctcataa							TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114447517	A	A	114447517	1	1	62	0	1	0	0	0	0	0	0	0	9020	957	33	4		4	LRCH2	23	114447517	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	5	114447517	40823043	909	76113	344	2									
KLHL13	90293	broad.mit.edu	37	chrX	117098433	117098433	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agataaaaaataatcactttGaatgatcacaaggactatgc	6	6	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117098433	T	T	117098433	1	4	62	0	1	0	0	0	0	0	0	0	8440	1305	45	3		3	KLHL13	23	117098433	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	2650916	117098433	38172127	910	76114											
RHOXF1	158800	broad.mit.edu	37	chrX	119249292	119249292	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccccagtggctttttcctCatgattgggtggggcaaggg	14	10	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119249292	A	A	119249292	1	1	62	0	1	0	0	0	0	0	0	0	13456	841	29	3		3	RHOXF1	23	119249292	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	2150859	119249292	36021268	911	76115											
XIAP	331	broad.mit.edu	37	chrX	123020085	123020085	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtgctggactctactaCacaggtattggtgaccaagt	11	9	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123020085	A	A	123020085	4	1	62	1	0	0	0	0	0	1	0	0	17555	489	17	3	575	3	XIAP	23	123020085	Nonsense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	3770793	123020085	32250475	912	76116											
ODZ1	10178	broad.mit.edu	37	chrX	123805640	123805640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccatttgcatacagctctCcttcaactggttgcaactgc	6	14	2	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123805640	A	A	123805640	3	1	62	1	0	0	0	0	1	0	0	0	10929	855	30	3	7245	3	ODZ1	23	123805640	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	785555	123805640	31464920	913	76117											
ODZ1	10178	broad.mit.edu	37	chrX	123889999	123889999	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagacgtagatttggtcttTtcacatagtcccatatttct	6	9	4	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123889999	G	G	123889999	1	3	62	0	1	0	0	0	0	0	0	0	10929	1856	64	5		5	ODZ1	23	123889999	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	84359	123889999	31380561	914	76118											
XPNPEP2	7512	broad.mit.edu	37	chrX	128880532	128880532	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagagcctggggctggcccTgaaggtgacctctgcattgc	16	11	1	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128880532	A	A	128880532	1	1	62	0	1	0	0	0	0	0	0	0	17570	1595	55	5		5	XPNPEP2	23	128880532	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	4990533	128880532	26390028	915	76119											
ENOX2	10495	broad.mit.edu	37	chrX	129779736	129779736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtggcgccggcttctgCggaagaggtgggttctcgtc	18	9	2	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129779736	A	A	129779736	1	1	62	0	1	0	0	0	0	0	0	0	5169	783	27	3		3	ENOX2	23	129779736	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	899204	129779736	25490824	916	76120											
ZNF75D	7626	broad.mit.edu	37	chrX	134392326	134392326	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaatcgccacactgtctcCcacaatggttgaaccaattt	7	12	1	1			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134392326	T	T	134392326	1	4	62	0	1	0	0	0	0	0	0	0	18263	638	22	4		4	ZNF75D	23	134392326	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	4612590	134392326	20878234	917	76121											
ZNF75D	7626	broad.mit.edu	37	chrX	134424657	134424657	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgccattgatgtgcatgcTtttatgttttttagagaagg	10	4	0	2			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134424657	C	C	134424657	1	2	62	0	1	0	0	0	0	0	0	0	18263	1624	56	5		5	ZNF75D	23	134424657	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	32331	134424657	20845903	918	76122											
FMR1	2332	broad.mit.edu	37	chrX	147010237	147010237	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaaattgtcacaattgaaCgtctaagatctgttaatccc	6	8	3	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147010237	T	T	147010237	3	4	62	1	0	0	0	0	1	0	0	0	6018	536	19	4	349	4	FMR1	23	147010237	Missense_Mutation	SNP	C	TCGA-17-Z032-01A-01W-0746-08	12585580	147010237	8260323	919	76123											
HSFX2	100130086	broad.mit.edu	37	chrX	148831830	148831830	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcagaggtgacagaaacaGagtatctgccacccatcact	9	12	3	4			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148831830	T	T	148831830	1	4	62	0	1	0	0	0	0	0	0	0	7468	957	33	3		3	HSFX2	23	148831830	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	1821593	148831830	6438730	920	76124											
CSAG1	158511	broad.mit.edu	37	chrX	151904269	151904269	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacccattctgttatctgccGtctaggcaggctacaaacct	7	13	3	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151904269	A	A	151904269	1	1	62	0	1	0	0	0	0	0	0	0	3958	1160	40	4		4	CSAG1	23	151904269	Intron	SNP	G	TCGA-17-Z032-01A-01W-0746-08	3072439	151904269	3366291	921	76125											
RPL10	6134	broad.mit.edu	37	chrX	153628150	153628150	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctccctacctagccctggAggctgcccgaatttgtgcca	9	15	1	0			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153628150	C	C	153628150	3	2	62	1	0	0	0	0	1	0	0	0	13665	304	11	5	211	5	RPL10	23	153628150	Missense_Mutation	SNP	A	TCGA-17-Z032-01A-01W-0746-08	1723881	153628150	1642410	922	76126											
F8	2157	broad.mit.edu	37	chrX	154129464	154129464	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcccaggtaagaaatgaTggtgacctgagttaagatgg	13	5	0	5			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154129464	A	A	154129464	1	1	62	0	1	0	0	0	0	0	0	0	5393	1479	51	5		5	F8	23	154129464	Intron	SNP	T	TCGA-17-Z032-01A-01W-0746-08	501314	154129464	1141096	923	76127											
TMLHE	55217	broad.mit.edu	37	chrX	154806625	154806625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtgaaagatttcataaCgaagatatcaaaagcaattg	7	7	2	3			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154806625	A	A	154806625	1	1	62	0	1	0	0	0	0	0	0	0	16355	551	19	3		3	TMLHE	23	154806625	Intron	SNP	C	TCGA-17-Z032-01A-01W-0746-08	677161	154806625	463935	924	76128											
ERRFI1	54206	broad.mit.edu	37	chr1	8075586	8075586	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcgactgctccagtaggTcttcctcatattccccatgg	8	14	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8075586	G	G	8075586	3	3	63	1	0	0	0	0	1	0	0	0	5286	1667	58	5	1306	5	ERRFI1	1	8075586	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08		8075586	241175035	1	76129											
KIF1B	23095	broad.mit.edu	37	chr1	10412590	10412590	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatgacccttccagctcctGaacttacacagagatttaaa	5	11	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10412590	A	A	10412590	1	1	63	0	1	0	0	0	0	0	0	0	8354	1305	45	4		4	KIF1B	1	10412590	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2337004	10412590	238838031	2	76130											
PGD	5226	broad.mit.edu	37	chr1	10467955	10467955	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggaggctgcagtgagctGagatcacaccactgcattcc	12	11	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10467955	A	A	10467955	1	1	63	0	1	0	0	0	0	0	0	0	11882	1305	45	4		4	PGD	1	10467955	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	55365	10467955	238782666	3	76131											
SRM	6723	broad.mit.edu	37	chr1	11115026	11115026	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggccacccaccttgcggGcaaactcgggcagcacaaag	12	15	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11115026	A	A	11115026	3	1	63	1	0	0	0	0	1	0	0	0	15269	1203	42	4	35	4	SRM	1	11115026	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	647071	11115026	238135595	4	76132											
NBPF1	55672	broad.mit.edu	37	chr1	16936039	16936040	+	Intron	INS	-	TTCA	TTCA													ttgaatatggtattagtatgINSttcattcattcattcattta					rs147837394		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTCA	16936040	TTCA	TTCA	16936039	6	5	63	0	1	1	1	0	0	0	0	0	10286	1392	48	0		0	NBPF1	1	16936039	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	5821013	16936039	232314582	5	76133											
NBPF3	84224	broad.mit.edu	37	chr1	21806533	21806533	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttattctttacttttccTacttttccaggctcagcagg	7	11	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21806533	C	C	21806533	1	2	63	0	1	0	0	0	0	0	0	0	10292	1537	53	5		5	NBPF3	1	21806533	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	4870494	21806533	227444088	6	76134											
TCEA3	6920	broad.mit.edu	37	chr1	23719087	23719087	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actccacacatcatacacacAcactccacacatcatacaca	0	18	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23719087	C	C	23719087	1	2	63	0	1	0	0	0	0	0	0	0	15791	174	6	5		5	TCEA3	1	23719087	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	1912554	23719087	225531534	7	76135											
PHC2	1912	broad.mit.edu	37	chr1	33799659	33799659	+	Intron	DEL	A	-	-													gacacatccaaaatatacttAaaaaaaaaaggggaaaagaa							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33799659	-	-	33799659	6	5	63	0	1	1	0	1	0	0	0	0	11912	377	13	0		0	PHC2	1	33799659	Intron	DEL	A	TCGA-17-Z033-01A-01W-0746-08	10080572	33799659	215450962	8	76136											
DLGAP3	58512	broad.mit.edu	37	chr1	35370101	35370101	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaagctcaagtcccggtagGacccatctggaccctccagg	11	14	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35370101	A	A	35370101	3	1	63	1	0	0	0	0	1	0	0	0	4601	1174	41	4	2095	4	DLGAP3	1	35370101	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1570442	35370101	213880520	9	76137											
SFPQ	6421	broad.mit.edu	37	chr1	35653772	35653772	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaacctagcagttgacCtaagaactaggttagcacta	9	8	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35653772	G	G	35653772	1	3	63	0	1	0	0	0	0	0	0	0	14273	696	24	4		4	SFPQ	1	35653772	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	283671	35653772	213596849	10	76138											
UTP11L	51118	broad.mit.edu	37	chr1	38482219	38482219	+	Intron	SNP	G	T	T													ataaaatggccaaagctctgGcagcctgtcagataattttt							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38482219	T	T	38482219	1	4	63	0	1	0	0	0	0	0	0	0	17221	1218	42	3		3	UTP11L	1	38482219	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2828447	38482219	210768402	11	76139	345	2									
UTP11L	51118	broad.mit.edu	37	chr1	38482228	38482228	+	Intron	SNP	C	G	G													ccaaagctctggcagcctgtCagataattttttctgtgatc							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38482228	G	G	38482228	1	3	63	0	1	0	0	0	0	0	0	0	17221	841	29	4		4	UTP11L	1	38482228	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	9	38482228	210768393	12	76140	345	2									
KIAA0467	23334	broad.mit.edu	37	chr1	43885762	43885762	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcatagccccttccccCtacagatctgtcagttggca	7	15	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43885762	G	G	43885762	1	3	63	0	1	0	0	0	0	0	0	0	8248	696	24	4		4	KIAA0467	1	43885762	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	5403534	43885762	205364859	13	76141											
CYP4B1	1580	broad.mit.edu	37	chr1	47283797	47283797	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttaagcaaggcctgtccCttcaggtctttgactctctg	9	11	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47283797	T	T	47283797	1	4	63	0	1	0	0	0	0	0	0	0	4218	696	24	4		4	CYP4B1	1	47283797	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3398035	47283797	201966824	14	76142											
AGBL4	84871	broad.mit.edu	37	chr1	49023607	49023608	+	Intron	DEL	AG	-	-													attgtgagctctttgagaacAgagactacctcttctccatc					rs144686908		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49023608	-	-	49023607	6	5	63	0	1	1	0	1	0	0	0	0	377	203	7	0		0	AGBL4	1	49023607	Intron	DEL	AG	TCGA-17-Z033-01A-01W-0746-08	1739810	49023607	200227014	15	76143											
EPS15	2060	broad.mit.edu	37	chr1	51869047	51869047	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcacctcctcctgtccttCcacccttacaagtccccaat	2	19	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51869047	A	A	51869047	1	1	63	0	1	0	0	0	0	0	0	0	5234	870	30	3		3	EPS15	1	51869047	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2845440	51869047	197381574	16	76144											
C1orf173	127254	broad.mit.edu	37	chr1	75115078	75115078	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattctttactgtttccccaAatagtgcataatcattcact	3	10	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75115078	T	T	75115078	1	4	63	0	1	0	0	0	0	0	0	0	2034	29	1	5		5	C1orf173	1	75115078	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	23246031	75115078	174135543	17	76145											
LPAR3	23566	broad.mit.edu	37	chr1	85331432	85331432	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgacatgtgcctctccacGgcgataaccagcaagttggt	10	11	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85331432	A	A	85331432	2	1	63	1	0	0	0	0	0	0	0	1	8993	1103	39	4		4	LPAR3	1	85331432	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	10216354	85331432	163919189	18	76146											
GBP4	115361	broad.mit.edu	37	chr1	89652625	89652625	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatctttcagtgtgatcagCaagaaggcattgcaggaaac	10	7	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89652625	T	T	89652625	1	4	63	0	1	0	0	0	0	0	0	0	6338	725	25	4		4	GBP4	1	89652625	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4321193	89652625	159597996	19	76147											
C1orf59	113802	broad.mit.edu	37	chr1	109193697	109193697	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcaaatttatgatctgaaTctcttaaggtcactgatgga	7	7	4	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109193697	A	A	109193697	3	1	63	1	0	0	0	0	1	0	0	0	2073	1435	50	5	660	5	C1orf59	1	109193697	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	19541072	109193697	140056924	20	76148											
NOTCH2	4853	broad.mit.edu	37	chr1	120546766	120546766	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaataaaggcaagaaaacGtattcagaaactatttcaga	8	5	2	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120546766	A	A	120546766	1	1	63	0	1	0	0	0	0	0	0	0	10643	1160	40	4		4	NOTCH2	1	120546766	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	11353069	120546766	128703855	21	76149											
NBPF10	100132406	broad.mit.edu	37	chr1	145311563	145311563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctgtgtgtgtgtgtgtgTgtgtgtgtgtgtgtgtgtgt	19	2	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145311563	A	A	145311563	1	1	63	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145311563	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	24764797	145311563	103939058	22	76150											
NBPF10	100132406	broad.mit.edu	37	chr1	145577956	145577956	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgaagcatcatctttcccatCagtgctggagagaaaggcac	10	11	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145577956	G	G	145577956	1	3	63	0	1	0	0	0	0	0	0	0	10287	841	29	4		4	NBPF10	1	145577956	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	266393	145577956	103672665	23	76151											
NUP210L	91181	broad.mit.edu	37	chr1	154108533	154108533	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgatcataaaggaatgatCaggaagcagacataaaataa	8	5	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154108533	G	G	154108533	1	3	63	0	1	0	0	0	0	0	0	0	10856	841	29	4		4	NUP210L	1	154108533	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	8530577	154108533	95142088	24	76152											
DCST1	149095	broad.mit.edu	37	chr1	155006927	155006927	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagcggtgcagaggctcctGacctgggggctgccagtctc	15	12	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155006927	T	T	155006927	2	4	63	1	0	0	0	0	0	0	0	1	4335	1277	45	3		3	DCST1	1	155006927	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	898394	155006927	94243694	25	76153											
MEF2D	4209	broad.mit.edu	37	chr1	156450589	156450590	+	Intron	INS	-	G	G													ctggggggaaggggccggaaINSgggggggccaacagagacag							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156450590	G	G	156450589	6	5	63	0	1	1	1	0	0	0	0	0	9551	87	3	0		0	MEF2D	1	156450589	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	1443662	156450589	92800032	26	76154											
C1orf92	149499	broad.mit.edu	37	chr1	156899299	156899299	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtacagaggtggtggaGggaagaaggccacatgggcc	17	7	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156899299	A	A	156899299	1	1	63	0	1	0	0	0	0	0	0	0	2091	1015	35	4		4	C1orf92	1	156899299	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	448710	156899299	92351322	27	76155											
FCRL3	115352	broad.mit.edu	37	chr1	157665171	157665171	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcccccaggccattgtcTgcatcacaggagtagtttcc	11	13	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157665171	A	A	157665171	2	1	63	1	0	0	0	0	0	0	0	1	5853	1567	55	5		5	FCRL3	1	157665171	Silent	SNP	T	TCGA-17-Z033-01A-01W-0746-08	765872	157665171	91585450	28	76156											
DARC	2532	broad.mit.edu	37	chr1	159174851	159174851	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgcccctcagtctttatatCtcttccttttcctcctcatc	2	16	4	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159174851	G	G	159174851	1	3	63	0	1	0	0	0	0	0	0	0	4273	928	32	4		4	DARC	1	159174851	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1509680	159174851	90075770	29	76157											
TBX19	9095	broad.mit.edu	37	chr1	168250551	168250551	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtttatctgccgcccCgcgtgggctggcagggcttg	17	11	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168250551	T	T	168250551	1	4	63	0	1	0	0	0	0	0	0	0	15776	667	23	4		4	TBX19	1	168250551	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	9075700	168250551	81000070	30	76158											
PAPPA2	60676	broad.mit.edu	37	chr1	176668227	176668228	+	Intron	INS	-	C	C													atgtatctttctgctaatctINSccccccagggcctcctgatg							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176668228	C	C	176668227	6	5	63	0	1	1	1	0	0	0	0	0	11527	1566	54	0		0	PAPPA2	1	176668227	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	8417676	176668227	72582394	31	76159											
C1orf14	81626	broad.mit.edu	37	chr1	182920510	182920510	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatatttcacaaagaatacActgggattagtcttccagac	6	9	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182920510	G	G	182920510	2	3	63	1	0	0	0	0	0	0	0	1	2020	156	6	5		5	C1orf14	1	182920510	Silent	SNP	A	TCGA-17-Z033-01A-01W-0746-08	6252283	182920510	66330111	32	76160											
FAM129A	116496	broad.mit.edu	37	chr1	184764489	184764489	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccccaggggctcctcggtGagccctccactggctggcgg	16	16	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184764489	A	A	184764489	2	1	63	1	0	0	0	0	0	0	0	1	5482	1277	45	4		4	FAM129A	1	184764489	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1843979	184764489	64486132	33	76161											
TPR	7175	broad.mit.edu	37	chr1	186324934	186324934	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagactaataaaatgctttgTtggctttcataaatcagctt	6	6	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186324934	C	C	186324934	1	2	63	0	1	0	0	0	0	0	0	0	16540	1740	60	5		5	TPR	1	186324934	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	1560445	186324934	62925687	34	76162											
CDC73	79577	broad.mit.edu	37	chr1	193117052	193117052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaaagccagagaagaagGgcgtgcacctgaacagcgac	13	9	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193117052	T	T	193117052	3	4	63	1	0	0	0	0	1	0	0	0	3115	1232	43	2	815	2	CDC73	1	193117052	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	6792118	193117052	56133569	35	76163											
KCNT2	343450	broad.mit.edu	37	chr1	196250087	196250087	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gataaagtctggcataagttCtgatccataagtcatctgca	8	8	4	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196250087	G	G	196250087	3	3	63	1	0	0	0	0	1	0	0	0	8162	913	32	4	610	4	KCNT2	1	196250087	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3133035	196250087	53000534	36	76164											
CFH	3075	broad.mit.edu	37	chr1	196695702	196695702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtggtggaatattattGcaatcctagatttctaatga	9	4	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196695702	T	T	196695702	3	4	63	1	0	0	0	0	1	0	0	0	3313	1319	46	3	2044	3	CFH	1	196695702	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	445615	196695702	52554919	37	76165											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200722836	200722836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgcaccctatcttttgGctttcttccctctttcgtac	6	14	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200722836	T	T	200722836	1	4	63	0	1	0	0	0	0	0	0	0	2638	1218	42	3		3	CAMSAP1L1	1	200722836	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4027134	200722836	48527785	38	76166											
CSRP1	1465	broad.mit.edu	37	chr1	201465415	201465415	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaccccacatttcttgcctCctccccagttcggcattctg	5	18	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201465415	T	T	201465415	3	4	63	1	0	0	0	0	1	0	0	0	4000	855	30	4	600	4	CSRP1	1	201465415	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	742579	201465415	47785206	39	76167											
NAV1	89796	broad.mit.edu	37	chr1	201751666	201751666	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaccgcagcctgccccggCcagccaagtcaagttctatg	10	15	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201751666	G	G	201751666	3	3	63	1	0	0	0	0	1	0	0	0	10277	739	26	4	2105	4	NAV1	1	201751666	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	286251	201751666	47498955	40	76168											
KISS1	3814	broad.mit.edu	37	chr1	204165610	204165610	+	5'UTR	DEL	A	-	-													gcagctgggctcccggtctcAagagttctccccagctccct					rs34468807		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	204165610	-	-	204165610	6	5	63	0	1	1	0	1	0	0	0	0	8398	145	5	0		0	KISS1	1	204165610	5'UTR	DEL	A	TCGA-17-Z033-01A-01W-0746-08	2413944	204165610	45085011	41	76169											
CD34	947	broad.mit.edu	37	chr1	208072455	208072455	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtctctggagttgaaaCgttggctggggtggtgaaca	17	5	1	2	rs146237257	byFrequency	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208072455	T	T	208072455	3	4	63	1	0	0	0	0	1	0	0	0	3036	536	19	4	821	4	CD34	1	208072455	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3906845	208072455	41178166	42	76170											
ESRRG	2104	broad.mit.edu	37	chr1	216680263	216680263	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaacatgaaggatgggaaGgcccagggagcttttagtca	13	7	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216680263	A	A	216680263	1	1	63	0	1	0	0	0	0	0	0	0	5304	1015	35	4		4	ESRRG	1	216680263	3'UTR	SNP	G	TCGA-17-Z033-01A-01W-0746-08	8607808	216680263	32570358	43	76171											
DUSP10	11221	broad.mit.edu	37	chr1	221876030	221876030	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcttcctctgaaaaaagGgagaaagacaagagatgaag	12	5	1	6			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221876030	A	A	221876030	1	1	63	0	1	0	0	0	0	0	0	0	4850	1247	43	4		4	DUSP10	1	221876030	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5195767	221876030	27374591	44	76172											
ARID4B	51742	broad.mit.edu	37	chr1	235338529	235338529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccatttgtaaactttggGtaatcgattactgggttcct	8	8	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235338529	T	T	235338529	3	4	63	1	0	0	0	0	1	0	0	0	922	1261	44	3	316	3	ARID4B	1	235338529	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	13462499	235338529	13912092	45	76173											
GNG4	2786	broad.mit.edu	37	chr1	235715362	235715362	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcatgcatggtctctacaGgggactttgaaggtcagaaa	13	7	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235715362	C	C	235715362	1	2	63	0	1	0	0	0	0	0	0	0	6593	1015	35	4		4	GNG4	1	235715362	3'UTR	SNP	G	TCGA-17-Z033-01A-01W-0746-08	376833	235715362	13535259	46	76174											
RYR2	6262	broad.mit.edu	37	chr1	237608767	237608767	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagatcccagcatgaagaaTcacgcacagcccgagttatc	9	13	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237608767	G	G	237608767	3	3	63	1	0	0	0	0	1	0	0	0	13880	1435	50	5	1291	5	RYR2	1	237608767	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	1893405	237608767	11641854	47	76175											
RYR2	6262	broad.mit.edu	37	chr1	237659764	237659764	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgtaaatgaaaacaatgaAaggtttttttggactttcct	8	4	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237659764	T	T	237659764	1	4	63	0	1	0	0	0	0	0	0	0	13880	29	1	5		5	RYR2	1	237659764	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	50997	237659764	11590857	48	76176											
RGS7	6000	broad.mit.edu	37	chr1	240969390	240969390	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatgaatacatctaacgCtcaacttctcggaagcacgt	6	10	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240969390	T	T	240969390	1	4	63	0	1	0	0	0	0	0	0	0	13419	812	28	4		4	RGS7	1	240969390	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3309626	240969390	8281231	49	76177											
OR2B11	127623	broad.mit.edu	37	chr1	247615096	247615096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgactgaggaagatgtaCatggggctgtggagttgagg	19	3	0	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247615096	A	A	247615096	3	1	63	1	0	0	0	0	1	0	0	0	11082	478	17	3	767	3	OR2B11	1	247615096	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	6645706	247615096	1635525	50	76178											
OR2AK2	391191	broad.mit.edu	37	chr1	248129009	248129010	+	Missense_Mutation	DNP	GA	TT	TT													tcttggcccttggtggaactGaagcccttctccttggtttt							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	248129010	TT	TT	248129009	3	4	63	1	0	0	0	0	1	0	0	0	11080	1291	45	3	378	3	OR2AK2	1	248129009	Missense_Mutation	DNP	GA	TCGA-17-Z033-01A-01W-0746-08	513913	248129009	1121612	51	76179											
OR2M2	391194	broad.mit.edu	37	chr1	248343745	248343745	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttctcctggatcctgggctCtacagatggaatcattgatg	10	10	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248343745	G	G	248343745	3	3	63	1	0	0	0	0	1	0	0	0	11104	913	32	4	460	4	OR2M2	1	248343745	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	214736	248343745	906876	52	76180											
CPSF3	51692	broad.mit.edu	37	chr2	9607821	9607821	+	Intron	DEL	T	-	-													gaaactgaactctctgtcgcTtttttttttcccaggtgcag							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9607821	-	-	9607821	6	5	63	0	1	1	0	1	0	0	0	0	3858	1624	56	0		0	CPSF3	2	9607821	Intron	DEL	T	TCGA-17-Z033-01A-01W-0746-08		9607821	233591552	53	76181											
NCOA1	8648	broad.mit.edu	37	chr2	24930338	24930338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaggcacttccaactctGcctctgctaactcttcagga	7	15	4	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24930338	T	T	24930338	3	4	63	1	0	0	0	0	1	0	0	0	10323	1319	46	3	2033	3	NCOA1	2	24930338	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	15322517	24930338	218269035	54	76182											
NLRC4	58484	broad.mit.edu	37	chr2	32476460	32476460	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggctctgaagagcctgcAggaggccattcagggtcagc	16	10	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32476460	T	T	32476460	3	4	63	1	0	0	0	0	1	0	0	0	10564	188	7	5	2625	5	NLRC4	2	32476460	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	7546122	32476460	210722913	55	76183											
BIRC6	57448	broad.mit.edu	37	chr2	32673994	32673994	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatttatcagatgtcctttCaggtagtgatttcttttatt	7	5	3	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32673994	T	T	32673994	3	4	63	1	0	0	0	0	1	0	0	0	1444	838	29	4	4702	4	BIRC6	2	32673994	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	197534	32673994	210525379	56	76184											
LTBP1	4052	broad.mit.edu	37	chr2	33614460	33614460	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtaatggcaacttgttagCaatgcagcatttctggtccc	9	9	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33614460	T	T	33614460	1	4	63	0	1	0	0	0	0	0	0	0	9160	725	25	4		4	LTBP1	2	33614460	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	940466	33614460	209584913	57	76185											
CRIM1	51232	broad.mit.edu	37	chr2	36665729	36665729	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagtgggctagatggattCtctgagactcctgtttgacc	12	8	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36665729	T	T	36665729	1	4	63	0	1	0	0	0	0	0	0	0	3905	928	32	4		4	CRIM1	2	36665729	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3051269	36665729	206533644	58	76186											
DHX57	90957	broad.mit.edu	37	chr2	39088728	39088728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatactccagttctaacCcaatggtccagactctgttc	6	13	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39088728	A	A	39088728	3	1	63	1	0	0	0	0	1	0	0	0	4553	623	22	2	3416	2	DHX57	2	39088728	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2422999	39088728	204110645	59	76187											
PRKCE	5581	broad.mit.edu	37	chr2	46314105	46314105	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgtccacacacacatgcacGcgcacactgattttccatga	6	15	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46314105	C	C	46314105	1	2	63	0	1	0	0	0	0	0	0	0	12617	1102	38	4		4	PRKCE	2	46314105	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	7225377	46314105	196885268	60	76188											
ANXA4	307	broad.mit.edu	37	chr2	70031598	70031598	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtaactccaatgtccaCagaggaacctgctttctcat	8	11	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70031598	T	T	70031598	1	4	63	0	1	0	0	0	0	0	0	0	720	493	17	4		4	ANXA4	2	70031598	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	23717493	70031598	173167775	61	76189											
TGFA	7039	broad.mit.edu	37	chr2	70692618	70692618	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtccctcagccccactgttCcaatcctctgacacatctgg	6	17	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70692618	T	T	70692618	1	4	63	0	1	0	0	0	0	0	0	0	15938	870	30	4		4	TGFA	2	70692618	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	661020	70692618	172506755	62	76190											
ZNF638	27332	broad.mit.edu	37	chr2	71576193	71576193	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttatgaggcctggatctAtgggtctcccaagattttac	9	9	2	2	rs139959335		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71576193	G	G	71576193	3	3	63	1	0	0	0	0	1	0	0	0	18182	449	16	5	111	5	ZNF638	2	71576193	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	883575	71576193	171623180	63	76191											
C2orf65	130951	broad.mit.edu	37	chr2	74788360	74788365	+	Intron	DEL	AGGAGG	-	-													ggagaaggaggaggaggagaAggaggaggaggaggaggagg							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74788365	-	-	74788360	6	5	63	0	1	1	0	1	0	0	0	0	2206	87	3	0		0	C2orf65	2	74788360	Intron	DEL	AGGAGG	TCGA-17-Z033-01A-01W-0746-08	3212167	74788360	168411013	64	76192											
HK2	3099	broad.mit.edu	37	chr2	75094768	75094768	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttctctgcagaacacGgagagttcctggctctggat	10	11	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75094768	T	T	75094768	4	4	63	1	0	0	0	0	0	1	0	0	7258	1117	39	1	242	1	HK2	2	75094768	Nonsense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	306408	75094768	168104605	65	76193											
LRRTM4	80059	broad.mit.edu	37	chr2	77745944	77745944	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgtttccactgcatcacTaaccttttcaccctggatgt	5	12	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77745944	C	C	77745944	3	2	63	1	0	0	0	0	1	0	0	0	9129	1522	53	5	735	5	LRRTM4	2	77745944	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	2651176	77745944	165453429	66	76194											
VWA3B	200403	broad.mit.edu	37	chr2	98797496	98797496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtcagaaacaacctctGttgagattgcatcgaatcca	8	10	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98797496	T	T	98797496	3	4	63	1	0	0	0	0	1	0	0	0	17368	1377	48	3	1162	3	VWA3B	2	98797496	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	21051552	98797496	144401877	67	76195											
EIF5B	9669	broad.mit.edu	37	chr2	100015424	100015424	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaacagggaatcactcttCttgggtcacctgtacctgta	9	11	4	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100015424	G	G	100015424	1	3	63	0	1	0	0	0	0	0	0	0	5086	928	32	4		4	EIF5B	2	100015424	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1217928	100015424	143183949	68	76196											
SLC5A7	60482	broad.mit.edu	37	chr2	108609657	108609657	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atacacaaccttactttcctCagccttggcttctgaggaca	6	13	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108609657	A	A	108609657	1	1	63	0	1	0	0	0	0	0	0	0	14784	841	29	3		3	SLC5A7	2	108609657	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	8594233	108609657	134589716	69	76197											
SLC35F5	80255	broad.mit.edu	37	chr2	114492258	114492258	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggtaaaaagtcctatgagGagaaaagaatttaaaaatgg	10	2	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114492258	A	A	114492258	1	1	63	0	1	0	0	0	0	0	0	0	14706	1189	41	4		4	SLC35F5	2	114492258	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5882601	114492258	128707115	70	76198											
DPP10	57628	broad.mit.edu	37	chr2	116538412	116538412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattcaagtgcctagaataGtagcatttctataataactt	5	7	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116538412	T	T	116538412	1	4	63	0	1	0	0	0	0	0	0	0	4767	1044	36	3		3	DPP10	2	116538412	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2046154	116538412	126660961	71	76199											
TSN	7247	broad.mit.edu	37	chr2	122522531	122522531	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttacttggcagaactggtctCattttcagtgggattctttt	9	7	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122522531	G	G	122522531	1	3	63	0	1	0	0	0	0	0	0	0	16754	841	29	4		4	TSN	2	122522531	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	5984119	122522531	120676842	72	76200											
MCM6	4175	broad.mit.edu	37	chr2	136620149	136620149	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactatgtacactttttccTgcaacactgtatcaggcaaa	6	10	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136620149	A	A	136620149	1	1	63	0	1	0	0	0	0	0	0	0	9484	1595	55	5		5	MCM6	2	136620149	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	14097618	136620149	106579224	73	76201											
PKP4	8502	broad.mit.edu	37	chr2	159517892	159517892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggaagcaaatgcggtcctGcgaggggctggtagactcac	15	10	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159517892	T	T	159517892	3	4	63	1	0	0	0	0	1	0	0	0	12082	1319	46	3	2187	3	PKP4	2	159517892	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	22897743	159517892	83681481	74	76202											
ABCB11	8647	broad.mit.edu	37	chr2	169787280	169787280	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgtctgccctggactaatCgacactgagagaccattcag	10	11	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169787280	A	A	169787280	2	1	63	1	0	0	0	0	0	0	0	1	42	871	31	3		3	ABCB11	2	169787280	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	10269388	169787280	73412093	75	76203											
MYO3B	140469	broad.mit.edu	37	chr2	171264122	171264122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagctatgtaaagatgaGttctatatagaggttgatta	10	2	1	5			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171264122	T	T	171264122	1	4	63	0	1	0	0	0	0	0	0	0	10171	1044	36	3		3	MYO3B	2	171264122	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1476842	171264122	71935251	76	76204											
NFE2L2	4780	broad.mit.edu	37	chr2	178098968	178098968	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactccaagatctatatctTgcctccaaagtatgtcaatc	4	11	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178098968	C	C	178098968	3	2	63	1	0	0	0	0	1	0	0	0	10463	1812	63	5	1756	5	NFE2L2	2	178098968	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	6834846	178098968	65100405	77	76205											
CCDC141	285025	broad.mit.edu	37	chr2	179702494	179702494	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaaaaagaaaagccaaatCatccttattcattcattttt	3	7	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179702494	A	A	179702494	1	1	63	0	1	0	0	0	0	0	0	0	2801	841	29	3		3	CCDC141	2	179702494	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1603526	179702494	63496879	78	76206											
NRP2	8828	broad.mit.edu	37	chr2	206648725	206648726	+	Intron	INS	-	AC	AC													ctagagtgcatctctctctgINSacacacacacacacacacac					rs139928312	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	206648726	AC	AC	206648725	6	5	63	0	1	1	1	0	0	0	0	0	10756	1305	45	0		0	NRP2	2	206648725	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	26946231	206648725	36550648	79	76207											
C2orf80	389073	broad.mit.edu	37	chr2	209036949	209036949	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacacactgtccacagtccaTtgatggggcacgtgaagtat	11	10	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209036949	C	C	209036949	1	2	63	0	1	0	0	0	0	0	0	0	2219	1508	52	5		5	C2orf80	2	209036949	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	2388224	209036949	34162424	80	76208											
MARCH4	57574	broad.mit.edu	37	chr2	217209809	217209809	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatggcaacttcatgtgaatGagaaaagttgggaacagctg	13	5	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	217209809	C	C	217209809	1	2	63	0	1	0	0	0	0	0	0	0	9395	1305	45	4		4	MARCH4	2	217209809	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	8172860	217209809	25989564	81	76209											
C2orf62	375307	broad.mit.edu	37	chr2	219231792	219231792	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctccccagggtgctgcatCatcaccaagatgcccatctt	9	15	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219231792	T	T	219231792	2	4	63	1	0	0	0	0	0	0	0	1	2203	816	29	4		4	C2orf62	2	219231792	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2021983	219231792	23967581	82	76210											
ZNF142	7701	broad.mit.edu	37	chr2	219503289	219503289	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcggtcggtgtgggtgaGggcatgatggcgcaggccag	22	7	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219503289	A	A	219503289	3	1	63	1	0	0	0	0	1	0	0	0	17857	1000	35	4	230	4	ZNF142	2	219503289	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	271497	219503289	23696084	83	76211											
SPEG	10290	broad.mit.edu	37	chr2	220355303	220355303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgaggcctacatcaccCctcggtacctcgtgctcatt	8	16	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220355303	A	A	220355303	3	1	63	1	0	0	0	0	1	0	0	0	15154	623	22	2	9252	2	SPEG	2	220355303	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	852014	220355303	22844070	84	76212											
INPP5D	3635	broad.mit.edu	37	chr2	234104166	234104167	+	Intron	INS	-	G	G													gtgggcgtggggtgggtgttINSggggggggtggatatcaggg							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234104167	G	G	234104166	6	5	63	0	1	1	1	0	0	0	0	0	7826	1827	63	0		0	INPP5D	2	234104166	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	13748863	234104166	9095207	85	76213											
PRLH	51052	broad.mit.edu	37	chr2	238474911	238474912	+	5'Flank	INS	-	AT	AT													ctacacacatacacacacacINSctgcacacatacacacatct					rs148646552	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	238474912	AT	AT	238474911	6	5	63	0	1	1	1	0	0	0	0	0	12635	522	18	0		0	PRLH	2	238474911	5'Flank	INS	-	TCGA-17-Z033-01A-01W-0746-08	4370745	238474911	4724462	86	76214											
NDUFA10	4705	broad.mit.edu	37	chr2	240928437	240928437	+	Intron	DEL	T	-	-													cacacgtgtacaaggacagaTaagggagaaacagcacgcgc					rs4149564		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	240928437	-	-	240928437	6	5	63	0	1	1	0	1	0	0	0	0	10355	1421	49	0		0	NDUFA10	2	240928437	Intron	DEL	T	TCGA-17-Z033-01A-01W-0746-08	2453526	240928437	2270936	87	76215											
AGXT	189	broad.mit.edu	37	chr2	241813334	241813334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagctaggcaggcatccCgctggactggcctgccctga	12	14	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241813334	A	A	241813334	1	1	63	0	1	0	0	0	0	0	0	0	404	667	23	1		1	AGXT	2	241813334	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	884897	241813334	1386039	88	76216											
KCNH8	131096	broad.mit.edu	37	chr3	19491848	19491848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaagcacatattctaagGtaaacgcaagatgttctaat	7	7	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19491848	T	T	19491848	1	4	63	0	1	0	0	0	0	0	0	0	8108	1276	44	3		3	KCNH8	3	19491848	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08		19491848	178530582	89	76217											
CNOT10	25904	broad.mit.edu	37	chr3	32778870	32778870	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaattatttatttgttgctCttcataattaagactcttac	3	6	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32778870	T	T	32778870	1	4	63	0	1	0	0	0	0	0	0	0	3650	928	32	4		4	CNOT10	3	32778870	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	13287022	32778870	165243560	90	76218											
SCN5A	6331	broad.mit.edu	37	chr3	38639328	38639328	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagtgatggtgaggtcagtAaacgggtccatgaccaccaa	12	8	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38639328	G	G	38639328	2	3	63	1	0	0	0	0	0	0	0	1	14035	359	13	5		5	SCN5A	3	38639328	Silent	SNP	A	TCGA-17-Z033-01A-01W-0746-08	5860458	38639328	159383102	91	76219											
TRAK1	22906	broad.mit.edu	37	chr3	42242258	42242258	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catttttggagggttaaactCcagggttgtgcccgcatttg	12	8	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42242258	T	T	42242258	1	4	63	0	1	0	0	0	0	0	0	0	16573	870	30	4		4	TRAK1	3	42242258	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3602930	42242258	155780172	92	76220											
MYL3	4634	broad.mit.edu	37	chr3	46904771	46904771	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgatcttggaagcatcaAactcgacctccttagggcgc	9	13	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46904771	C	C	46904771	3	2	63	1	0	0	0	0	1	0	0	0	10142	14	1	5	501	5	MYL3	3	46904771	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	4662513	46904771	151117659	93	76221											
IMPDH2	3615	broad.mit.edu	37	chr3	49065198	49065198	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaaatcaatgtccctggagGagatgatgcccaccaagcgg	12	10	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49065198	A	A	49065198	3	1	63	1	0	0	0	0	1	0	0	0	7797	1174	41	4	1108	4	IMPDH2	3	49065198	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2160427	49065198	148957232	94	76222											
RBM5	10181	broad.mit.edu	37	chr3	50148145	50148145	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccacttaccagtatgatgAatcttcaggatattactatg	7	8	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50148145	T	T	50148145	3	4	63	1	0	0	0	0	1	0	0	0	13251	246	9	5	1459	5	RBM5	3	50148145	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	1082947	50148145	147874285	95	76223											
ITIH1	3697	broad.mit.edu	37	chr3	52821583	52821583	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtgggtgacactgtcttcGataatatgtccttgtcttct	9	10	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52821583	T	T	52821583	1	4	63	0	1	0	0	0	0	0	0	0	7973	1073	37	3		3	ITIH1	3	52821583	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2673438	52821583	145200847	96	76224											
CACNA2D3	55799	broad.mit.edu	37	chr3	54604068	54604068	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggactccgtctgactatcgcGaagcaaacagtctcatccat	8	13	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54604068	A	A	54604068	2	1	63	1	0	0	0	0	0	0	0	1	2576	1045	37	4		4	CACNA2D3	3	54604068	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1782485	54604068	143418362	97	76225											
CADM2	253559	broad.mit.edu	37	chr3	86063019	86063019	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttccaaaatgaaagttgttGcttctagacttttagaaaaa	6	6	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86063019	C	C	86063019	1	2	63	0	1	0	0	0	0	0	0	0	2593	1334	46	4		4	CADM2	3	86063019	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	31458951	86063019	111959411	98	76226											
CGGBP1	8545	broad.mit.edu	37	chr3	88144991	88144991	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaagtattgtgctcctcaGaaaagcctttccacttcagc	6	14	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88144991	C	C	88144991	1	2	63	0	1	0	0	0	0	0	0	0	3332	957	33	4		4	CGGBP1	3	88144991	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2081972	88144991	109877439	99	76227											
PHLDB2	90102	broad.mit.edu	37	chr3	111664227	111664227	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctatgattttacatgtcGctttatgttgccttagaaat	7	6	0	2	rs139768531	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111664227	A	A	111664227	1	1	63	0	1	0	0	0	0	0	0	0	11947	1102	38	4		4	PHLDB2	3	111664227	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	23519236	111664227	86358203	100	76228											
SIAH2	6478	broad.mit.edu	37	chr3	150459978	150459978	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattccaaggttcccattatCtgcaaaaagatgtgctatgg	9	8	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150459978	T	T	150459978	3	4	63	1	0	0	0	0	1	0	0	0	14413	913	32	4	53	4	SIAH2	3	150459978	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	38795751	150459978	47562452	101	76229											
IGSF10	285313	broad.mit.edu	37	chr3	151164577	151164577	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccctgggaagacaggaCagacatgtcacattgagcac	10	12	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151164577	A	A	151164577	2	1	63	1	0	0	0	0	0	0	0	1	7667	465	17	3		3	IGSF10	3	151164577	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	704599	151164577	46857853	102	76230											
KCNAB1	7881	broad.mit.edu	37	chr3	155893908	155893908	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacacacctctctttggggGcaaatggccagacatcccag	9	13	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155893908	A	A	155893908	1	1	63	0	1	0	0	0	0	0	0	0	8079	1218	42	4		4	KCNAB1	3	155893908	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4729331	155893908	42128522	103	76231											
MECOM	2122	broad.mit.edu	37	chr3	168833844	168833844	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatttctctttatcactttCaatgtcactttccagatcag	3	10	5	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168833844	T	T	168833844	3	4	63	1	0	0	0	0	1	0	0	0	9515	835	29	4	1943	4	MECOM	3	168833844	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	12939936	168833844	29188586	104	76232											
PSMD2	5708	broad.mit.edu	37	chr3	184026219	184026219	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttgtctcttaactttttgtCctgtctgcttccctcagtta	5	11	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184026219	G	G	184026219	1	3	63	0	1	0	0	0	0	0	0	0	12804	870	30	4		4	PSMD2	3	184026219	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	15192375	184026219	13996211	105	76233											
TPRG1	285386	broad.mit.edu	37	chr3	188896002	188896002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgggtttttattgagGtggaggaaagataacagaag	15	1	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188896002	T	T	188896002	1	4	63	0	1	0	0	0	0	0	0	0	16542	1276	44	3		3	TPRG1	3	188896002	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4869783	188896002	9126428	106	76234											
CCDC50	152137	broad.mit.edu	37	chr3	191107310	191107310	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacctatcatgacagatGgtgaagatgcggattacact	9	10	1	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191107310	A	A	191107310	3	1	63	1	0	0	0	0	1	0	0	0	2848	1348	47	4	1390	4	CCDC50	3	191107310	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2211308	191107310	6915120	107	76235											
FYTTD1	84248	broad.mit.edu	37	chr3	197501003	197501003	+	Intron	DEL	T	-	-													ctttctgtggtacctactgcTttttttttcccttcaggtgc							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197501003	-	-	197501003	6	5	63	0	1	1	0	1	0	0	0	0	6187	1624	56	0		0	FYTTD1	3	197501003	Intron	DEL	T	TCGA-17-Z033-01A-01W-0746-08	6393693	197501003	521427	108	76236											
LRCH3	84859	broad.mit.edu	37	chr3	197577740	197577740	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgagcagttccacgaGtgttcttaaagtgaacacga	11	9	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197577740	A	A	197577740	1	1	63	0	1	0	0	0	0	0	0	0	9021	1044	36	4		4	LRCH3	3	197577740	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	76737	197577740	444690	109	76237											
ZNF718	255403	broad.mit.edu	37	chr4	106242	106242	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcctgggaagagcacagaCcagcagcacagaccactgtg	11	12	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106242	T	T	106242	1	4	63	0	1	0	0	0	0	0	0	0	18248	522	18	4		4	ZNF718	4	106242	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08		106242	191048034	110	76238											
C4orf44	345222	broad.mit.edu	37	chr4	3254982	3254982	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccgccccgcccgactggccCtattacctagccattgatgg	9	17	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3254982	G	G	3254982	2	3	63	1	0	0	0	0	0	0	0	1	2295	668	24	4		4	C4orf44	4	3254982	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3148740	3254982	187899294	111	76239											
CPZ	8532	broad.mit.edu	37	chr4	8607717	8607717	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctgtatttgcccccagtGgagcccgaggtgaagctcat	11	12	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8607717	A	A	8607717	3	1	63	1	0	0	0	0	1	0	0	0	3871	1362	47	4	729	4	CPZ	4	8607717	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5352735	8607717	182546559	112	76240											
ATP10D	57205	broad.mit.edu	37	chr4	47548645	47548645	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctttttatcccacagccagGaggttggagtcctatcagga	11	10	1	0	rs139734817		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47548645	C	C	47548645	3	2	63	1	0	0	0	0	1	0	0	0	1122	1165	41	4	1435	4	ATP10D	4	47548645	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	38940928	47548645	143605631	113	76241											
SPATA18	132671	broad.mit.edu	37	chr4	52938291	52938291	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaggaggagatagctgttCtgtctgctgagaaaagtgca	14	5	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52938291	T	T	52938291	2	4	63	1	0	0	0	0	0	0	0	1	15119	912	32	4		4	SPATA18	4	52938291	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	5389646	52938291	138215985	114	76242											
FRAS1	80144	broad.mit.edu	37	chr4	79290857	79290857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgttgatcacaggggagGgctatgagccataatgaaat	12	5	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79290857	T	T	79290857	1	4	63	0	1	0	0	0	0	0	0	0	6102	1247	43	2		2	FRAS1	4	79290857	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	26352566	79290857	111863419	115	76243											
FRAS1	80144	broad.mit.edu	37	chr4	79458084	79458084	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtttaacccctttcaaCccttgacatttgtttttctt	4	11	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79458084	A	A	79458084	1	1	63	0	1	0	0	0	0	0	0	0	6102	522	18	3		3	FRAS1	4	79458084	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	167227	79458084	111696192	116	76244											
GRID2	2895	broad.mit.edu	37	chr4	94436475	94436475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatccttttgagagggaCagcatgtattcccaaatgtg	10	8	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94436475	A	A	94436475	3	1	63	1	0	0	0	0	1	0	0	0	6838	477	17	3	2156	3	GRID2	4	94436475	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	14978391	94436475	96717801	117	76245											
GRID2	2895	broad.mit.edu	37	chr4	94693218	94693218	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccttattttctttttcttCatctccaggatgacaaggaa	5	9	4	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94693218	T	T	94693218	1	4	63	0	1	0	0	0	0	0	0	0	6838	841	29	4		4	GRID2	4	94693218	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	256743	94693218	96461058	118	76246											
TACR3	6870	broad.mit.edu	37	chr4	104640714	104640715	+	Missense_Mutation	DNP	CC	AA	AA													ggtccagcagttgcagccacCcagtctcaactgcccccgtg							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	104640715	AA	AA	104640714	3	1	63	1	0	0	0	0	1	0	0	0	15626	623	22	2	1298	2	TACR3	4	104640714	Missense_Mutation	DNP	CC	TCGA-17-Z033-01A-01W-0746-08	9947496	104640714	86513562	119	76247											
RWDD4A	201965	broad.mit.edu	37	chr4	184572586	184572586	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccaatactcatgctcagatCagaaatgtaatattttgaaa	5	7	3	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184572586	A	A	184572586	1	1	63	0	1	0	0	0	0	0	0	0	13869	841	29	3		3	RWDD4A	4	184572586	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	79931872	184572586	6581690	120	76248											
ENPP6	133121	broad.mit.edu	37	chr4	185018489	185018489	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccttcccgcctgccggtGctgttcatccaaaacggaag	9	15	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185018489	A	A	185018489	2	1	63	1	0	0	0	0	0	0	0	1	5176	1310	46	4		4	ENPP6	4	185018489	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	445903	185018489	6135787	121	76249											
ZDHHC11	79844	broad.mit.edu	37	chr5	816844	816844	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttagacctcatctaaggaGaagaccatctttctcgtggc	8	10	4	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	816844	A	A	816844	1	1	63	0	1	0	0	0	0	0	0	0	17727	957	33	4		4	ZDHHC11	5	816844	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08		816844	180098416	122	76250											
IL7R	3575	broad.mit.edu	37	chr5	35874618	35874618	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgtcgctctgttggtcatCttggcctgtgtgttatggaa	12	8	4	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35874618	A	A	35874618	2	1	63	1	0	0	0	0	0	0	0	1	7775	903	32	3		3	IL7R	5	35874618	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	35057774	35874618	145040642	123	76251											
CSNK1G3	1456	broad.mit.edu	37	chr5	122941149	122941149	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttttgaaaacaaaactctCaacacagtgattataattgg	5	7	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122941149	G	G	122941149	1	3	63	0	1	0	0	0	0	0	0	0	3990	841	29	4		4	CSNK1G3	5	122941149	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	87066531	122941149	57974111	124	76252											
FSTL4	23105	broad.mit.edu	37	chr5	132556372	132556372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcaaatggcatgcctgGttaaagatagacttttagga	10	5	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132556372	T	T	132556372	1	4	63	0	1	0	0	0	0	0	0	0	6139	1276	44	3		3	FSTL4	5	132556372	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	9615223	132556372	48358888	125	76253											
ANKHD1	54882	broad.mit.edu	37	chr5	139852008	139852008	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtgacaaaggaaatcctCttcaattgaaaaagattatg	9	5	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139852008	T	T	139852008	1	4	63	0	1	0	0	0	0	0	0	0	628	928	32	4		4	ANKHD1	5	139852008	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	7295636	139852008	41063252	126	76254											
APBB3	10307	broad.mit.edu	37	chr5	139941222	139941222	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatggccttggcagggacatCacagcaaaacacatggcact	10	11	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139941222	T	T	139941222	3	4	63	1	0	0	0	0	1	0	0	0	764	826	29	4	787	4	APBB3	5	139941222	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	89214	139941222	40974038	127	76255											
HARS	3035	broad.mit.edu	37	chr5	140054474	140054474	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcagggacagagggtgtcCaagctggcaccctgttctta	12	12	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140054474	G	G	140054474	1	3	63	0	1	0	0	0	0	0	0	0	7025	609	21	4		4	HARS	5	140054474	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	113252	140054474	40860786	128	76256											
PCDHA5	56143	broad.mit.edu	37	chr5	140203707	140203707	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcagggtcccacctctacaGacaacgtgagttttctaata	7	12	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140203707	T	T	140203707	3	4	63	1	0	0	0	0	1	0	0	0	11621	942	33	3	2349	3	PCDHA5	5	140203707	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	149233	140203707	40711553	129	76257											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725412	140725412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggccagaacgcctggctGtcctaccgcctgctcaaggc	12	16	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140725412	T	T	140725412	2	4	63	1	0	0	0	0	0	0	0	1	11649	1364	48	3		3	PCDHGA3	5	140725412	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	521705	140725412	40189848	130	76258											
ARHGAP26	23092	broad.mit.edu	37	chr5	142541849	142541850	+	Intron	INS	-	ACAC	ACAC													ctactcccaaacacacacatINSacacacacacacacacacac					rs140126135	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACAC	142541850	ACAC	ACAC	142541849	6	5	63	0	1	1	1	0	0	0	0	0	877	1421	49	0		0	ARHGAP26	5	142541849	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	1816437	142541849	38373411	131	76259											
LARS	51520	broad.mit.edu	37	chr5	145509752	145509752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaattatttaccatttccCtcaccttctttaaaataaaa	1	9	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145509752	A	A	145509752	1	1	63	0	1	0	0	0	0	0	0	0	8706	696	24	2		2	LARS	5	145509752	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2967903	145509752	35405508	132	76260											
SLC36A2	153201	broad.mit.edu	37	chr5	150715165	150715165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagtcttctaacctcatgGttgactcagtgccttgcccc	8	13	4	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150715165	T	T	150715165	1	4	63	0	1	0	0	0	0	0	0	0	14708	1276	44	3		3	SLC36A2	5	150715165	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5205413	150715165	30200095	133	76261											
SLC36A1	206358	broad.mit.edu	37	chr5	150867731	150867731	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcttcgtgggctttgtGgtggggacctatgaggctct	17	8	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150867731	T	T	150867731	2	4	63	1	0	0	0	0	0	0	0	1	14707	1335	47	2		2	SLC36A1	5	150867731	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	152566	150867731	30047529	134	76262											
ATP10B	23120	broad.mit.edu	37	chr5	160097613	160097613	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaatctcattgcatttcaTttggatgaagtctcccacgc	7	11	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160097613	C	C	160097613	3	2	63	1	0	0	0	0	1	0	0	0	1121	1493	52	5	3933	5	ATP10B	5	160097613	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	9229882	160097613	20817647	135	76263											
ATP10B	23120	broad.mit.edu	37	chr5	160114740	160114740	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgagattgcacgactatactCcagcctggggaacagaatga	11	10	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160114740	A	A	160114740	1	1	63	0	1	0	0	0	0	0	0	0	1121	870	30	3		3	ATP10B	5	160114740	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	17127	160114740	20800520	136	76264											
SLIT3	6586	broad.mit.edu	37	chr5	168110989	168110989	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtacactgtggttggaGgggaactcaggctgtcatag	14	8	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168110989	A	A	168110989	3	1	63	1	0	0	0	0	1	0	0	0	14855	1000	35	4	923	4	SLIT3	5	168110989	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	7996249	168110989	12804271	137	76265											
CDHR2	54825	broad.mit.edu	37	chr5	176015963	176015963	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccaggccacccttgcctctGatccctgctggggtggaggg	14	15	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176015963	A	A	176015963	1	1	63	0	1	0	0	0	0	0	0	0	3149	1305	45	4		4	CDHR2	5	176015963	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	7904974	176015963	4899297	138	76266											
OR2V2	285659	broad.mit.edu	37	chr5	180582495	180582495	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgtgagatgctatccTtgttgaagctggcctgtgta	11	8	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180582495	C	C	180582495	2	2	63	1	0	0	0	0	0	0	0	1	11125	1606	56	5		5	OR2V2	5	180582495	Silent	SNP	T	TCGA-17-Z033-01A-01W-0746-08	4566532	180582495	332765	139	76267											
MBOAT1	154141	broad.mit.edu	37	chr6	20113209	20113209	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgaaggttagcaccgtGgggtaccatggaacccgctg	15	9	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20113209	A	A	20113209	2	1	63	1	0	0	0	0	0	0	0	1	9449	1335	47	4		4	MBOAT1	6	20113209	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08		20113209	151001858	140	76268											
HIST1H2AB	8335	broad.mit.edu	37	chr6	26033628	26033628	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatctcggcggtcaggtactCaagcaccgccgcgagataca	12	13	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26033628	T	T	26033628	3	4	63	1	0	0	0	0	1	0	0	0	7196	835	29	4	227	4	HIST1H2AB	6	26033628	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	5920419	26033628	145081439	141	76269											
CPNE5	57699	broad.mit.edu	37	chr6	36730131	36730131	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcaaatacatgctcacacAcacacacacacatgcagaca	4	15	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36730131	G	G	36730131	1	3	63	0	1	0	0	0	0	0	0	0	3847	174	6	5		5	CPNE5	6	36730131	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	10696503	36730131	134384936	142	76270											
MUT	4594	broad.mit.edu	37	chr6	49412493	49412493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaagtcaaggaaagggaCaatttacatgaagagagaat	11	3	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49412493	A	A	49412493	1	1	63	0	1	0	0	0	0	0	0	0	10085	493	17	3		3	MUT	6	49412493	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	12682362	49412493	121702574	143	76271											
PRIM2	5558	broad.mit.edu	37	chr6	57461782	57461782	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatctctcatggattaagaGctcagtctcacaagactgtg	9	9	4	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57461782	A	A	57461782	1	1	63	0	1	0	0	0	0	0	0	0	12597	986	34	4		4	PRIM2	6	57461782	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	8049289	57461782	113653285	144	76272											
EYS	346007	broad.mit.edu	37	chr6	66085816	66085816	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtcccttaaagtcatGgggagaatggaagcaagttg	15	6	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66085816	C	C	66085816	1	2	63	0	1	0	0	0	0	0	0	0	5375	1363	47	4		4	EYS	6	66085816	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	8624034	66085816	105029251	145	76273											
ORC3L	23595	broad.mit.edu	37	chr6	88299900	88299900	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagaccatggctacgtcctCgatgtctaaggtatgtggtg	12	8	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88299900	T	T	88299900	3	4	63	1	0	0	0	0	1	0	0	0	11357	893	31	4	16	4	ORC3L	6	88299900	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	22214084	88299900	82815167	146	76274											
MAP7	9053	broad.mit.edu	37	chr6	136687027	136687027	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctccactttgacttccctCttgacagggcggatgttgcc	11	13	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136687027	G	G	136687027	3	3	63	1	0	0	0	0	1	0	0	0	9358	912	32	4	1166	4	MAP7	6	136687027	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	48387127	136687027	34428040	147	76275											
GRM1	2911	broad.mit.edu	37	chr6	146350825	146350825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcagtccatcaccagcctCcggccgagaaagtgcccgag	10	16	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146350825	A	A	146350825	3	1	63	1	0	0	0	0	1	0	0	0	6862	855	30	3	174	3	GRM1	6	146350825	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	9663798	146350825	24764242	148	76276											
IGF2R	3482	broad.mit.edu	37	chr6	160506118	160506118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaccacaactggtgacGtccaggtcctgggactcgtt	13	11	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160506118	T	T	160506118	3	4	63	1	0	0	0	0	1	0	0	0	7646	1145	40	3	6322	3	IGF2R	6	160506118	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	14155293	160506118	10608949	149	76277											
PDE10A	10846	broad.mit.edu	37	chr6	165848759	165848759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctactagcagtgttttcctgGacttggccacataagcagag	10	10	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165848759	T	T	165848759	3	4	63	1	0	0	0	0	1	0	0	0	11724	1174	41	3	1934	3	PDE10A	6	165848759	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5342641	165848759	5266308	150	76278											
MAD1L1	8379	broad.mit.edu	37	chr7	2210440	2210440	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggaaaggcgacacaggctGagaagggaaagtcggggcgt	18	7	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2210440	A	A	2210440	1	1	63	0	1	0	0	0	0	0	0	0	9235	1305	45	4		4	MAD1L1	7	2210440	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08		2210440	156928223	151	76279											
SDK1	221935	broad.mit.edu	37	chr7	4201510	4201510	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagagcgcggggaatcacgCgcgttttgtcaaatgtgttc	13	8	2	1	rs142068935	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4201510	T	T	4201510	1	4	63	0	1	0	0	0	0	0	0	0	14081	783	27	4		4	SDK1	7	4201510	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1991070	4201510	154937153	152	76280											
FSCN1	6624	broad.mit.edu	37	chr7	5644976	5644976	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcgacactcctgtggacttCttcttcgagttctgcgacta	10	12	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5644976	A	A	5644976	3	1	63	1	0	0	0	0	1	0	0	0	6127	912	32	3	1371	3	FSCN1	7	5644976	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1443466	5644976	153493687	153	76281											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26236846	26236846	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaataagagaaaaaatcttGagttaaaactaaattcagaa	5	3	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26236846	C	C	26236846	1	2	63	0	1	0	0	0	0	0	0	0	7326	1305	45	4		4	HNRNPA2B1	7	26236846	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	20591870	26236846	132901817	154	76282											
C7orf10	79783	broad.mit.edu	37	chr7	40314311	40314311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactgtgtctgggttataCcttttcagatcaaattctat	6	7	4	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40314311	A	A	40314311	1	1	63	0	1	0	0	0	0	0	0	0	2401	522	18	3		3	C7orf10	7	40314311	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	14077465	40314311	118824352	155	76283											
IKZF1	10320	broad.mit.edu	37	chr7	50358700	50358700	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatgtcccaagtttcaggtGagaccttatgagatagctgt	10	8	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50358700	A	A	50358700	1	1	63	0	1	0	0	0	0	0	0	0	7684	1305	45	4		4	IKZF1	7	50358700	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	10044389	50358700	108779963	156	76284											
GRB10	2887	broad.mit.edu	37	chr7	50660834	50660834	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttgccaggttagaggctgCcacctcagggaacagaacgg	13	11	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50660834	G	G	50660834	1	3	63	0	1	0	0	0	0	0	0	0	6822	754	26	4		4	GRB10	7	50660834	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	302134	50660834	108477829	157	76285											
TPST1	8460	broad.mit.edu	37	chr7	65705395	65705395	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaatatctgtttaataaCaagataaccacatcaagatg	5	7	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65705395	T	T	65705395	1	4	63	0	1	0	0	0	0	0	0	0	16551	493	17	4		4	TPST1	7	65705395	5'UTR	SNP	C	TCGA-17-Z033-01A-01W-0746-08	15044561	65705395	93433268	158	76286											
MAGI2	9863	broad.mit.edu	37	chr7	77649105	77649105	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggccgcaggctgaaagctCctttggtttcctaacgtcgt	11	12	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77649105	T	T	77649105	3	4	63	1	0	0	0	0	1	0	0	0	9283	864	30	4	476	4	MAGI2	7	77649105	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	11943710	77649105	81489558	159	76287											
PCLO	27445	broad.mit.edu	37	chr7	82582321	82582321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgctgtgacaggggtagCagaaaatgtctgtaaagctc	15	6	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82582321	A	A	82582321	3	1	63	1	0	0	0	0	1	0	0	0	11677	710	25	3	7581	3	PCLO	7	82582321	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4933216	82582321	76556342	160	76288											
PPP1R9A	55607	broad.mit.edu	37	chr7	94540638	94540638	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtgactataatgtgtatAgggtgagatccaggtataat	11	4	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94540638	T	T	94540638	3	4	63	1	0	0	0	0	1	0	0	0	12479	411	15	5	1215	5	PPP1R9A	7	94540638	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	11958317	94540638	64598025	161	76289											
PDAP1	11333	broad.mit.edu	37	chr7	98995504	98995504	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctttcctttcctcttccttCttccgggcagcctcctcccg	5	20	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98995504	G	G	98995504	3	3	63	1	0	0	0	0	1	0	0	0	11707	912	32	4	85	4	PDAP1	7	98995504	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4454866	98995504	60143159	162	76290											
LRRN3	54674	broad.mit.edu	37	chr7	110763928	110763928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggaaatcagcatacacaGtaaccccatcaggtgtgact	8	11	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110763928	T	T	110763928	3	4	63	1	0	0	0	0	1	0	0	0	9123	1029	36	3	1102	3	LRRN3	7	110763928	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	11768424	110763928	48374735	163	76291											
C7orf53	286006	broad.mit.edu	37	chr7	112124917	112124917	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttcttgtggcattcaggaaGatggaaagctttatgtggtg	14	4	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112124917	C	C	112124917	3	2	63	1	0	0	0	0	1	0	0	0	2427	942	33	4	48	4	C7orf53	7	112124917	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1360989	112124917	47013746	164	76292											
FLNC	2318	broad.mit.edu	37	chr7	128491451	128491451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgcaggctggggtggagacTcaccaggggcaggggtgagg	21	8	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128491451	A	A	128491451	1	1	63	0	1	0	0	0	0	0	0	0	5993	1566	54	5		5	FLNC	7	128491451	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	16366534	128491451	30647212	165	76293											
EXOC4	60412	broad.mit.edu	37	chr7	133602209	133602209	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtatcatggactccaacttaGataatggattatgttcaaag	8	6	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133602209	C	C	133602209	1	2	63	0	1	0	0	0	0	0	0	0	5348	957	33	4		4	EXOC4	7	133602209	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5110758	133602209	25536454	166	76294											
ZDHHC2	51201	broad.mit.edu	37	chr8	17055906	17055906	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttagatgtattttgaagatgGatcatcattgtccatggtga	10	4	2	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17055906	C	C	17055906	3	2	63	1	0	0	0	0	1	0	0	0	17736	1174	41	4	482	4	ZDHHC2	8	17055906	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08		17055906	129308116	167	76295											
POLR3D	661	broad.mit.edu	37	chr8	22104797	22104797	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaagtagctaggccttctGaatacttgccccttatttac	7	10	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22104797	A	A	22104797	1	1	63	0	1	0	0	0	0	0	0	0	12326	1305	45	4		4	POLR3D	8	22104797	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5048891	22104797	124259225	168	76296											
ST18	9705	broad.mit.edu	37	chr8	53055541	53055541	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagcttgggtttagggcttGgtatagaggcctctccagga	15	7	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53055541	C	C	53055541	3	2	63	1	0	0	0	0	1	0	0	0	15330	1348	47	4	1066	4	ST18	8	53055541	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	30950744	53055541	93308481	169	76297											
SULF1	23213	broad.mit.edu	37	chr8	70428622	70428622	+	Intron	DEL	A	-	-													gggagaagtgctacacacttAaaaaaaaaaaacagatcttg					rs35356580		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70428622	-	-	70428622	6	5	63	0	1	1	0	1	0	0	0	0	15488	377	13	0		0	SULF1	8	70428622	Intron	DEL	A	TCGA-17-Z033-01A-01W-0746-08	17373081	70428622	75935400	170	76298											
RBM12B	389677	broad.mit.edu	37	chr8	94747019	94747019	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatccctctggggatgcttGaagttatccagttgcctcaa	9	10	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94747019	A	A	94747019	2	1	63	1	0	0	0	0	0	0	0	1	13222	1281	45	4		4	RBM12B	8	94747019	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	24318397	94747019	51617003	171	76299											
RIMS2	9699	broad.mit.edu	37	chr8	105257096	105257097	+	Intron	DNP	CA	TT	TT													ccttcgctgatatttcttacCacatagtgattacaaagctg							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	105257097	TT	TT	105257096	1	4	63	0	1	0	0	0	0	0	0	0	13479	609	21	4		4	RIMS2	8	105257096	Intron	DNP	CA	TCGA-17-Z033-01A-01W-0746-08	10510077	105257096	41106926	172	76300											
CSMD3	114788	broad.mit.edu	37	chr8	113420536	113420536	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtgtttctagactacaGggtcacttaccttggtaaac	9	8	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113420536	A	A	113420536	1	1	63	0	1	0	0	0	0	0	0	0	3980	1015	35	4		4	CSMD3	8	113420536	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	8163440	113420536	32943486	173	76301											
FER1L6	654463	broad.mit.edu	37	chr8	125103885	125103885	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaaaatcctgattctagtGatatttttggctatgggaca	9	5	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125103885	T	T	125103885	1	4	63	0	1	0	0	0	0	0	0	0	5872	1305	45	3		3	FER1L6	8	125103885	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	11683349	125103885	21260137	174	76302											
TG	7038	broad.mit.edu	37	chr8	133898735	133898735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaaaggcagcaggccttgtCcagactctactttgggacct	11	12	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133898735	A	A	133898735	3	1	63	1	0	0	0	0	1	0	0	0	15936	855	30	3	1152	3	TG	8	133898735	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	8794850	133898735	12465287	175	76303											
FAM135B	51059	broad.mit.edu	37	chr8	139180013	139180013	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattactttgtttcctctctAtgaactgacataatccttca	3	11	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139180013	G	G	139180013	1	3	63	0	1	0	0	0	0	0	0	0	5495	464	16	5		5	FAM135B	8	139180013	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	5281278	139180013	7184009	176	76304											
COL22A1	169044	broad.mit.edu	37	chr8	139882566	139882566	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtatggtgtgtgtatataGaatgtgtgttatatatgtgt	13	0	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139882566	C	C	139882566	1	2	63	0	1	0	0	0	0	0	0	0	3713	957	33	4		4	COL22A1	8	139882566	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	702553	139882566	6481456	177	76305											
TSNARE1	203062	broad.mit.edu	37	chr8	143407867	143407867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgaggaaccagcaccagCgaaggggagggccccggaga	17	10	0	3	rs112390155		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143407867	T	T	143407867	1	4	63	0	1	0	0	0	0	0	0	0	16755	783	27	4		4	TSNARE1	8	143407867	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3525301	143407867	2956155	178	76306											
PTPRD	5789	broad.mit.edu	37	chr9	9209992	9209992	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggcccagatagatgattatCacgcagtagatttgtgtcct	11	8	1	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9209992	A	A	9209992	1	1	63	0	1	0	0	0	0	0	0	0	12907	841	29	3		3	PTPRD	9	9209992	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08		9209992	132003439	179	76307											
ACO1	48	broad.mit.edu	37	chr9	32434696	32434696	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctcgctacttaactaacaGagggtaagtatgaatgaggc	11	7	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32434696	A	A	32434696	3	1	63	1	0	0	0	0	1	0	0	0	146	942	33	4	2158	4	ACO1	9	32434696	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	23224704	32434696	108778735	180	76308											
PAX5	5079	broad.mit.edu	37	chr9	36846921	36846921	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagggactcccggaaaactCactccctgtgtatggtgggt	13	10	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36846921	A	A	36846921	4	1	63	1	0	0	0	0	0	1	0	0	11576	835	29	3	165	3	PAX5	9	36846921	Nonsense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4412225	36846921	104366510	181	76309											
FAM75A6	389730	broad.mit.edu	37	chr9	43629154	43629154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacccggggttctgatttcCttcctaggagcccccacctc	10	16	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43629154	T	T	43629154	1	4	63	0	1	0	0	0	0	0	0	0	5674	696	24	4		4	FAM75A6	9	43629154	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	6782233	43629154	97584277	182	76310											
TRPM3	80036	broad.mit.edu	37	chr9	73151377	73151377	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtattctgctgtttttAcaggcaccccaaagttggca	9	9	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73151377	T	T	73151377	3	4	63	1	0	0	0	0	1	0	0	0	16712	391	14	5	511	5	TRPM3	9	73151377	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	29522223	73151377	68062054	183	76311											
TMEFF1	8577	broad.mit.edu	37	chr9	103338824	103338824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaaaacaatagaggacGtcgacagaagcaaaacctag	8	11	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103338824	T	T	103338824	3	4	63	1	0	0	0	0	1	0	0	0	16136	1145	40	3	1123	3	TMEFF1	9	103338824	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	30187447	103338824	37874607	184	76312											
FAM129B	64855	broad.mit.edu	37	chr9	130270748	130270748	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggacttgcacagctcctCcttggtgggccccttcccca	10	16	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130270748	A	A	130270748	4	1	63	1	0	0	0	0	0	1	0	0	5483	864	30	3	869	3	FAM129B	9	130270748	Nonsense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	26931924	130270748	10942683	185	76313											
GOLGA2	2801	broad.mit.edu	37	chr9	131019381	131019381	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcacctcatcattctcgtCagcccggtaaaaaaaaggaa	6	12	5	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131019381	T	T	131019381	3	4	63	1	0	0	0	0	1	0	0	0	6616	826	29	4	38	4	GOLGA2	9	131019381	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	748633	131019381	10194050	186	76314											
C9orf106	414318	broad.mit.edu	37	chr9	132084838	132084838	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctataggaggcactgccCagagctcctaactggggtgg	14	11	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132084838	T	T	132084838	1	4	63	0	1	0	0	0	0	0	0	0	2473	609	21	4		4	C9orf106	9	132084838	3'UTR	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1065457	132084838	9128593	187	76315											
MRPS2	51116	broad.mit.edu	37	chr9	138395821	138395821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgacgactctccgctgGctgtgcacctctactgcagg	11	14	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138395821	T	T	138395821	3	4	63	1	0	0	0	0	1	0	0	0	9925	1203	42	3	747	3	MRPS2	9	138395821	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	6310983	138395821	2817610	188	76316											
MAN1B1	11253	broad.mit.edu	37	chr9	139996357	139996357	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacattcacactgttgcagGcgtgcaggtcggtggtgtta	13	9	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139996357	A	A	139996357	1	1	63	0	1	0	0	0	0	0	0	0	9304	1218	42	4		4	MAN1B1	9	139996357	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1600536	139996357	1217074	189	76317											
SLC39A12	221074	broad.mit.edu	37	chr10	18266683	18266683	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caatggaaggcattttcgtgGgtggaaatgtccattctgtc	12	7	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18266683	C	C	18266683	1	2	63	0	1	0	0	0	0	0	0	0	14729	1247	43	4		4	SLC39A12	10	18266683	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08		18266683	117268064	190	76318											
ACBD5	91452	broad.mit.edu	37	chr10	27486312	27486312	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accacaatccagttcattctGaggtcatccagttccagtag	7	12	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27486312	A	A	27486312	1	1	63	0	1	0	0	0	0	0	0	0	125	1305	45	4		4	ACBD5	10	27486312	3'UTR	SNP	G	TCGA-17-Z033-01A-01W-0746-08	9219629	27486312	108048435	191	76319											
PCDH15	65217	broad.mit.edu	37	chr10	55913103	55913103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgggtctcaacttttcacCaccatgtcgttttttccccc	5	15	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55913103	A	A	55913103	1	1	63	0	1	0	0	0	0	0	0	0	11605	609	21	2		2	PCDH15	10	55913103	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	28426791	55913103	79621644	192	76320											
HKDC1	80201	broad.mit.edu	37	chr10	71000488	71000488	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctatgacgacccctactgCgaagttggtgtcatcatcgg	11	12	2	1	rs144034774		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71000488	A	A	71000488	4	1	63	1	0	0	0	0	0	1	0	0	7260	776	27	3	694	3	HKDC1	10	71000488	Nonsense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	15087385	71000488	64534259	193	76321											
PRF1	5551	broad.mit.edu	37	chr10	72358889	72358889	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggggcaggtccccgagGgccctcttgaagtcagggtg	18	10	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72358889	A	A	72358889	2	1	63	1	0	0	0	0	0	0	0	1	12584	1219	43	4		4	PRF1	10	72358889	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1358401	72358889	63175858	194	76322											
SGPL1	8879	broad.mit.edu	37	chr10	72611005	72611005	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtcattttttcccctcttGataatcatacctctttcttt	2	11	5	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72611005	C	C	72611005	1	2	63	0	1	0	0	0	0	0	0	0	14331	1305	45	4		4	SGPL1	10	72611005	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	252116	72611005	62923742	195	76323											
OIT3	170392	broad.mit.edu	37	chr10	74677435	74677435	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagagatcttgaatagcctCttggtcagtcatccggaagc	10	11	4	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74677435	A	A	74677435	1	1	63	0	1	0	0	0	0	0	0	0	10944	928	32	3		3	OIT3	10	74677435	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2066430	74677435	60857312	196	76324											
SEC24C	9632	broad.mit.edu	37	chr10	75526299	75526300	+	Splice_Site	DNP	GG	TT	TT													gtctcgggcagttatcaccaGgtaagagccagattgtggag							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	75526300	TT	TT	75526299	5	4	63	1	0	0	0	0	0	0	1	0	14109	1014	35	2	1841	2	SEC24C	10	75526299	Splice_Site	DNP	GG	TCGA-17-Z033-01A-01W-0746-08	848864	75526299	60008448	197	76325											
KCNMA1	3778	broad.mit.edu	37	chr10	78669850	78669850	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaactgaacattagtatcGttcactagaaaaagcataaa	5	6	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78669850	A	A	78669850	2	1	63	1	0	0	0	0	0	0	0	1	8143	1136	40	4		4	KCNMA1	10	78669850	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3143551	78669850	56864897	198	76326											
PYROXD2	84795	broad.mit.edu	37	chr10	100143506	100143506	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctgatccaatggagcacTtggaattcaggggtggagtc	14	7	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100143506	C	C	100143506	1	2	63	0	1	0	0	0	0	0	0	0	12975	1624	56	5		5	PYROXD2	10	100143506	3'UTR	SNP	T	TCGA-17-Z033-01A-01W-0746-08	21473656	100143506	35391241	199	76327											
SLC25A28	81894	broad.mit.edu	37	chr10	101372268	101372268	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaatacaggtgcagctGcccacagagtgataggttga	12	7	0	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101372268	A	A	101372268	1	1	63	0	1	0	0	0	0	0	0	0	14605	1334	46	4		4	SLC25A28	10	101372268	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1228762	101372268	34162479	200	76328											
PKD2L1	9033	broad.mit.edu	37	chr10	102056665	102056665	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctccaaaaggaagaacCtggagcccctattagggtgg	14	9	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102056665	T	T	102056665	1	4	63	0	1	0	0	0	0	0	0	0	12062	696	24	4		4	PKD2L1	10	102056665	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	684397	102056665	33478082	201	76329											
NRAP	4892	broad.mit.edu	37	chr10	115409788	115409788	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtcaggagatcattttaTcacatacctggccatattgg	9	9	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115409788	A	A	115409788	1	1	63	0	1	0	0	0	0	0	0	0	10733	1450	50	5		5	NRAP	10	115409788	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	13353123	115409788	20124959	202	76330											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122273571	122273571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccttaattagatgatcaCatttaagaaatctcagttac	5	7	2	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122273571	A	A	122273571	1	1	63	0	1	0	0	0	0	0	0	0	12389	493	17	3		3	PPAPDC1A	10	122273571	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	6863783	122273571	13261176	203	76331											
CPXM2	119587	broad.mit.edu	37	chr10	125673495	125673495	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaccagagtgagcaccagaGtcaggccattgccaaccgca	12	13	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125673495	A	A	125673495	1	1	63	0	1	0	0	0	0	0	0	0	3870	1044	36	4		4	CPXM2	10	125673495	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3399924	125673495	9861252	204	76332											
MUC5B	727897	broad.mit.edu	37	chr11	1213092	1213092	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccagccctgttcccacCaccagcacaacctctgctcc	4	22	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1213092	T	T	1213092	1	4	63	0	1	0	0	0	0	0	0	0	10073	609	21	4		4	MUC5B	11	1213092	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08		1213092	133793424	205	76333											
OR51G2	81282	broad.mit.edu	37	chr11	4936450	4936450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagagagaccaggccaatCctgccaatgactgtgttggt	11	12	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4936450	A	A	4936450	3	1	63	1	0	0	0	0	1	0	0	0	11193	854	30	3	504	3	OR51G2	11	4936450	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3723358	4936450	130070066	206	76334											
OR52E8	390079	broad.mit.edu	37	chr11	5878153	5878153	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcaagaatgaaaaaaaTgctggtgtaaaaaaggctaa	10	3	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5878153	A	A	5878153	2	1	63	1	0	0	0	0	0	0	0	1	11212	1451	51	5		5	OR52E8	11	5878153	Silent	SNP	T	TCGA-17-Z033-01A-01W-0746-08	941703	5878153	129128363	207	76335											
OR56A5	390084	broad.mit.edu	37	chr11	5989572	5989572	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaggcttccagatagatGgtgatcagaagggtggcatt	15	5	1	5			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5989572	T	T	5989572	2	4	63	1	0	0	0	0	0	0	0	1	11230	1335	47	2		2	OR56A5	11	5989572	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	111419	5989572	129016944	208	76336											
GALNTL4	374378	broad.mit.edu	37	chr11	11363516	11363517	+	Intron	DEL	TT	-	-													ctgtctctaaaacattaaaaTttttttttttttaaaaagac					rs142980770		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11363517	-	-	11363516	6	5	63	0	1	1	0	1	0	0	0	0	6285	1508	52	0		0	GALNTL4	11	11363516	Intron	DEL	TT	TCGA-17-Z033-01A-01W-0746-08	5373944	11363516	123643000	209	76337											
PLEKHA7	144100	broad.mit.edu	37	chr11	16812637	16812637	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccgcttgaggccccgcacaGatgtgtgccggatgatggtg	16	11	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16812637	A	A	16812637	3	1	63	1	0	0	0	0	1	0	0	0	12156	942	33	4	526	4	PLEKHA7	11	16812637	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5449121	16812637	118193879	210	76338											
SLC1A2	6506	broad.mit.edu	37	chr11	35314560	35314560	+	Intron	SNP	G	A	A													gagagagagagagagaacaaGgaaatcatctgagccaaaat							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35314560	A	A	35314560	1	1	63	0	1	0	0	0	0	0	0	0	14545	1015	35	4		4	SLC1A2	11	35314560	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	18501923	35314560	99691956	211	76339	346	2									
SLC1A2	6506	broad.mit.edu	37	chr11	35314568	35314568	+	Intron	SNP	T	C	C													gagagagaacaaggaaatcaTctgagccaaaatgtacattt							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35314568	C	C	35314568	1	2	63	0	1	0	0	0	0	0	0	0	14545	1450	50	5		5	SLC1A2	11	35314568	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	8	35314568	99691948	212	76340	346	2									
OR4C12	283093	broad.mit.edu	37	chr11	50003113	50003113	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcaatggtcttatttaatCattatctgaagtcacttttt	5	7	5	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50003113	A	A	50003113	3	1	63	1	0	0	0	0	1	0	0	0	11140	826	29	3	8	3	OR4C12	11	50003113	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	14688545	50003113	85003403	213	76341											
OR4A15	81328	broad.mit.edu	37	chr11	55135511	55135511	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcacacagaaccctgaggGgcaaaaggttttatttgtca	10	9	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135511	A	A	55135511	3	1	63	1	0	0	0	0	1	0	0	0	11134	1232	43	4	154	4	OR4A15	11	55135511	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5132398	55135511	79871005	214	76342											
OR4D10	390197	broad.mit.edu	37	chr11	59245601	59245601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcaggcaggagagggcagGaggaaagccatctccacctg	14	11	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59245601	T	T	59245601	3	4	63	1	0	0	0	0	1	0	0	0	11148	1165	41	3	701	3	OR4D10	11	59245601	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4110090	59245601	75760915	215	76343											
OR4D9	390199	broad.mit.edu	37	chr11	59282609	59282609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttgacatctgcttttcctCcatcacagctcctaaggtcc	5	15	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59282609	A	A	59282609	3	1	63	1	0	0	0	0	1	0	0	0	11153	855	30	3	226	3	OR4D9	11	59282609	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	37008	59282609	75723907	216	76344											
PATL1	219988	broad.mit.edu	37	chr11	59420507	59420507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgactgaaaaacatacacCacattcattccatgtgggca	7	11	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59420507	A	A	59420507	1	1	63	0	1	0	0	0	0	0	0	0	11569	609	21	2		2	PATL1	11	59420507	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	137898	59420507	75586009	217	76345											
DAK	26007	broad.mit.edu	37	chr11	61113297	61113297	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccctcggttgcagggcccGtgctcagccccctttccttc	9	19	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61113297	A	A	61113297	1	1	63	0	1	0	0	0	0	0	0	0	4261	1160	40	4		4	DAK	11	61113297	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1692790	61113297	73893219	218	76346											
BBS1	582	broad.mit.edu	37	chr11	66298585	66298585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagagccccgccaggtcaGggtcagagcgtgcgggtggc	17	13	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66298585	T	T	66298585	1	4	63	0	1	0	0	0	0	0	0	0	1340	1015	35	2		2	BBS1	11	66298585	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5185288	66298585	68707931	219	76347											
RPS6KB2	6199	broad.mit.edu	37	chr11	67201615	67201616	+	Intron	INS	-	G	G													ccagggcagagggagtgaccINSggggggcaagcagggtgagc					rs56326725	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67201616	G	G	67201615	6	5	63	0	1	1	1	0	0	0	0	0	13768	667	23	0		0	RPS6KB2	11	67201615	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	903030	67201615	67804901	220	76348											
ODZ4	26011	broad.mit.edu	37	chr11	78433851	78433851	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgccgtcagcaaggccgTtgcagctggggcaggagatg	17	9	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78433851	G	G	78433851	3	3	63	1	0	0	0	0	1	0	0	0	10932	1725	60	5	4691	5	ODZ4	11	78433851	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	11232236	78433851	56572665	221	76349											
TRPC6	7225	broad.mit.edu	37	chr11	101341849	101341849	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttctctttaaagggatgTggcatagtggttacagtagt	12	5	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101341849	C	C	101341849	1	2	63	0	1	0	0	0	0	0	0	0	16708	1711	59	5		5	TRPC6	11	101341849	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	22907998	101341849	33664667	222	76350											
MMP1	4312	broad.mit.edu	37	chr11	102667843	102667843	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagttggaaggctttctcaAtggcatggtccacatctgct	11	9	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102667843	G	G	102667843	3	3	63	1	0	0	0	0	1	0	0	0	9741	101	4	5	1040	5	MMP1	11	102667843	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	1325994	102667843	32338673	223	76351											
C11orf87	399947	broad.mit.edu	37	chr11	109294724	109294724	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgacctggcaggcaggCcccaacccacgcaaaggaaa	11	17	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109294724	T	T	109294724	3	4	63	1	0	0	0	0	1	0	0	0	1681	739	26	4	367	4	C11orf87	11	109294724	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	6626881	109294724	25711792	224	76352											
NCAM1	4684	broad.mit.edu	37	chr11	112907048	112907048	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttttccttttccaggctgGacgcagcagccctctccagc	8	17	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112907048	T	T	112907048	1	4	63	0	1	0	0	0	0	0	0	0	10297	1189	41	3		3	NCAM1	11	112907048	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3612324	112907048	22099468	225	76353											
THY1	7070	broad.mit.edu	37	chr11	119290907	119290907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctggtgaagttggttcggGagcggtatgtgtgctcaggc	18	6	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119290907	T	T	119290907	3	4	63	1	0	0	0	0	1	0	0	0	16008	1174	41	3	266	3	THY1	11	119290907	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	6383859	119290907	15715609	226	76354											
SORL1	6653	broad.mit.edu	37	chr11	121448005	121448005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaaatgcaccagtgccGgagtgacgagtacaactgca	12	10	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121448005	T	T	121448005	3	4	63	1	0	0	0	0	1	0	0	0	15048	1116	39	1	3574	1	SORL1	11	121448005	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2157098	121448005	13558511	227	76355											
STT3A	3703	broad.mit.edu	37	chr11	125483103	125483103	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaggggtgggaattgtggGttaggggcaaaggggaagac	23	2	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125483103	C	C	125483103	1	2	63	0	1	0	0	0	0	0	0	0	15451	1276	44	4		4	STT3A	11	125483103	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4035098	125483103	9523413	228	76356											
OPCML	4978	broad.mit.edu	37	chr11	132642908	132642908	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaattcgagccacagaaaTaaaactctgaggagtgaaag	10	7	1	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132642908	C	C	132642908	1	2	63	0	1	0	0	0	0	0	0	0	10968	1421	49	5		5	OPCML	11	132642908	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	7159805	132642908	2363608	229	76357											
CACNA1C	775	broad.mit.edu	37	chr12	2757704	2757704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcccgaccatgctcccgGcttccgtgtccccctctaac	6	22	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2757704	T	T	2757704	1	4	63	0	1	0	0	0	0	0	0	0	2566	1218	42	3		3	CACNA1C	12	2757704	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08		2757704	131094191	230	76358											
GAPDH	2597	broad.mit.edu	37	chr12	6646512	6646512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactgcttagcacccctgGccaaggtcatccatgacaac	7	16	1	1	rs77154254		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6646512	T	T	6646512	3	4	63	1	0	0	0	0	1	0	0	0	6298	1203	42	3	503	3	GAPDH	12	6646512	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3888808	6646512	127205383	231	76359											
ACRBP	84519	broad.mit.edu	37	chr12	6754460	6754460	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcttctatctccttgagaGtgttaggtgagagaatagag	12	5	2	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6754460	A	A	6754460	3	1	63	1	0	0	0	0	1	0	0	0	170	1029	36	4	1258	4	ACRBP	12	6754460	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	107948	6754460	127097435	232	76360											
MFAP5	8076	broad.mit.edu	37	chr12	8808248	8808248	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagatgctggcatctaaggtGacaacagaactctgcatgag	12	8	2	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8808248	A	A	8808248	1	1	63	0	1	0	0	0	0	0	0	0	9611	1305	45	4		4	MFAP5	12	8808248	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2053788	8808248	125043647	233	76361											
SLCO1A2	6579	broad.mit.edu	37	chr12	21453282	21453282	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttagaatatgtatatttgcCtttagtgattccatattttt	5	4	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21453282	G	G	21453282	3	3	63	1	0	0	0	0	1	0	0	0	14836	695	24	4	1134	4	SLCO1A2	12	21453282	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	12645034	21453282	112398613	234	76362											
PYROXD1	79912	broad.mit.edu	37	chr12	21621465	21621465	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgctgggaaaatacaatgCacagggcttaggttcagatc	11	8	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21621465	T	T	21621465	3	4	63	1	0	0	0	0	1	0	0	0	12974	710	25	4	1326	4	PYROXD1	12	21621465	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	168183	21621465	112230430	235	76363											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	63	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3776819	25398284	108453611	236	76364											
GXYLT1	283464	broad.mit.edu	37	chr12	42499724	42499724	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagcgattataccatcCtattcgaggttcctcatgtt	7	10	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42499724	T	T	42499724	3	4	63	1	0	0	0	0	1	0	0	0	6968	690	24	4	578	4	GXYLT1	12	42499724	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	17101440	42499724	91352171	237	76365											
COL2A1	1280	broad.mit.edu	37	chr12	48369122	48369122	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttccactcagggtggcaGagtttcaggtctctgcaggt	12	11	4	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48369122	A	A	48369122	2	1	63	1	0	0	0	0	0	0	0	1	3719	929	33	4		4	COL2A1	12	48369122	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5869398	48369122	85482773	238	76366											
LARP4	113251	broad.mit.edu	37	chr12	50869442	50869442	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaagacaatggagctcCtgagaactccgttgagaaac	10	8	0	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50869442	T	T	50869442	3	4	63	1	0	0	0	0	1	0	0	0	8702	681	24	4	2036	4	LARP4	12	50869442	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2500320	50869442	82982453	239	76367											
ZBTB39	9880	broad.mit.edu	37	chr12	57398384	57398384	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctccatacccagacgctcAgctacctcgtagatgacccc	6	18	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57398384	G	G	57398384	2	3	63	1	0	0	0	0	0	0	0	1	17666	175	7	5		5	ZBTB39	12	57398384	Silent	SNP	A	TCGA-17-Z033-01A-01W-0746-08	6528942	57398384	76453511	240	76368											
ANKS1B	56899	broad.mit.edu	37	chr12	100042596	100042596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagagactagatggggcCtggatgctttgggggagagc	18	6	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100042596	A	A	100042596	1	1	63	0	1	0	0	0	0	0	0	0	689	696	24	2		2	ANKS1B	12	100042596	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	42644212	100042596	33809299	241	76369											
SLC17A8	246213	broad.mit.edu	37	chr12	100774659	100774659	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcctttgggatccggtgCaatcttggagttgccattgt	11	8	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100774659	A	A	100774659	4	1	63	1	0	0	0	0	0	1	0	0	14536	718	25	3	288	3	SLC17A8	12	100774659	Nonsense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	732063	100774659	33077236	242	76370											
ACACB	32	broad.mit.edu	37	chr12	109665277	109665277	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattccagttcatgctgccGtcctcccacccaaaccggta	7	16	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109665277	T	T	109665277	2	4	63	1	0	0	0	0	0	0	0	1	107	1132	40	3		3	ACACB	12	109665277	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	8890618	109665277	24186618	243	76371											
OAS3	4940	broad.mit.edu	37	chr12	113385773	113385773	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtgatcctggacccagctGaccccacatgggacctgggg	13	14	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113385773	C	C	113385773	3	2	63	1	0	0	0	0	1	0	0	0	10896	1290	45	4	916	4	OAS3	12	113385773	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3720496	113385773	20466122	244	76372											
TBX5	6910	broad.mit.edu	37	chr12	114837299	114837299	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctctctccccgctccacCtgccaccccagtgcctacca	4	22	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114837299	T	T	114837299	1	4	63	0	1	0	0	0	0	0	0	0	15783	696	24	4		4	TBX5	12	114837299	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1451526	114837299	19014596	245	76373											
MSI1	4440	broad.mit.edu	37	chr12	120800882	120800882	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatattgcttcacgtcctcCaccgtggtgttcaccgacag	8	13	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120800882	A	A	120800882	2	1	63	1	0	0	0	0	0	0	0	1	9969	581	21	2		2	MSI1	12	120800882	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	5963583	120800882	13051013	246	76374											
SLC25A30	253512	broad.mit.edu	37	chr13	45970003	45970003	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatctgttgctcacatcccAgaatctgtgatgagccaagc	8	12	4	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45970003	C	C	45970003	1	2	63	0	1	0	0	0	0	0	0	0	14608	203	7	5		5	SLC25A30	13	45970003	3'UTR	SNP	A	TCGA-17-Z033-01A-01W-0746-08		45970003	69199875	247	76375											
ZC3H13	23091	broad.mit.edu	37	chr13	46543636	46543636	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttcttcatcagaaatatCagaatcacctttggattttt	5	8	5	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46543636	T	T	46543636	3	4	63	1	0	0	0	0	1	0	0	0	17691	826	29	4	1667	4	ZC3H13	13	46543636	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	573633	46543636	68626242	248	76376											
KLHL1	57626	broad.mit.edu	37	chr13	70370862	70370862	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtaatatcaataaagtaaGatcttacctagaccatgtct	5	7	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70370862	T	T	70370862	1	4	63	0	1	0	0	0	0	0	0	0	8436	957	33	3		3	KLHL1	13	70370862	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	23827226	70370862	44799016	249	76377											
SLITRK1	114798	broad.mit.edu	37	chr13	84455171	84455171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtcatttaaaatgagcaCctccagcttgttcaagtcct	6	10	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84455171	A	A	84455171	3	1	63	1	0	0	0	0	1	0	0	0	14856	507	18	3	1622	3	SLITRK1	13	84455171	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	14084309	84455171	30714707	250	76378											
FARP1	10160	broad.mit.edu	37	chr13	99012722	99012723	+	Intron	INS	-	AC	AC													ccttaaaagaggccacttggINSacagacactggaaatgctcg					rs141598244	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	99012723	AC	AC	99012722	6	5	63	0	1	1	1	0	0	0	0	0	5733	1189	41	0		0	FARP1	13	99012722	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	14557551	99012722	16157156	251	76379											
TEP1	7011	broad.mit.edu	37	chr14	20852690	20852690	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcaaatcaagcacaacCaggtcagagcaggcccggct	13	12	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20852690	T	T	20852690	1	4	63	0	1	0	0	0	0	0	0	0	15881	609	21	4		4	TEP1	14	20852690	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08		20852690	86496850	252	76380											
CHD8	57680	broad.mit.edu	37	chr14	21864052	21864052	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctttatcaaagtcaaccCtaaaattatggagaggcaca	6	8	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21864052	T	T	21864052	5	4	63	1	0	0	0	0	0	0	1	0	3362	695	24	4	2738	4	CHD8	14	21864052	Splice_Site	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1011362	21864052	85485488	253	76381											
PSME2	5721	broad.mit.edu	37	chr14	24615758	24615758	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacctgtttgcgggcttcCccgctcaggcgcaccccaca	9	17	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24615758	A	A	24615758	2	1	63	1	0	0	0	0	0	0	0	1	12813	610	22	2		2	PSME2	14	24615758	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2751706	24615758	82733782	254	76382											
SSTR1	6751	broad.mit.edu	37	chr14	38679765	38679765	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacgtcccggatcacgacgCtctgagcccgggccacgcag	13	17	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38679765	T	T	38679765	3	4	63	1	0	0	0	0	1	0	0	0	15315	797	28	4	1173	4	SSTR1	14	38679765	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	14064007	38679765	68669775	255	76383											
C14orf138	79609	broad.mit.edu	37	chr14	50582945	50582945	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcacaggggggaaagcctgTaatccggatttccccagcaa	13	11	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50582945	C	C	50582945	1	2	63	0	1	0	0	0	0	0	0	0	1759	1653	57	5		5	C14orf138	14	50582945	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	11903180	50582945	56766595	256	76384											
PRKCH	5583	broad.mit.edu	37	chr14	61917509	61917509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattacagtttttacaaaGgacattggtatgacatttta	6	6	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61917509	T	T	61917509	1	4	63	0	1	0	0	0	0	0	0	0	12619	1015	35	2		2	PRKCH	14	61917509	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	11334564	61917509	45432031	257	76385											
PPP2R5E	5529	broad.mit.edu	37	chr14	63920452	63920452	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgtcaaacagcctctGcttattgtaatgtagtccac	7	11	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63920452	A	A	63920452	2	1	63	1	0	0	0	0	0	0	0	1	12497	1310	46	4		4	PPP2R5E	14	63920452	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2002943	63920452	43429088	258	76386											
PNMA1	9240	broad.mit.edu	37	chr14	74179051	74179057	+	3'UTR	DEL	TGGCATT	-	-													tgtccaaccaaccctttaccTggcattttagccagcaagac					rs1305033		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74179057	-	-	74179051	6	5	63	0	1	1	0	1	0	0	0	0	12248	1595	55	0		0	PNMA1	14	74179051	3'UTR	DEL	TGGCATT	TCGA-17-Z033-01A-01W-0746-08	10258599	74179051	33170489	259	76387											
TTLL5	23093	broad.mit.edu	37	chr14	76330023	76330023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaggagcctgcagacaGggggatttgcctgggaagga	16	8	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76330023	T	T	76330023	3	4	63	1	0	0	0	0	1	0	0	0	16856	1000	35	2	3450	2	TTLL5	14	76330023	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2150972	76330023	31019517	260	76388											
TTC7B	145567	broad.mit.edu	37	chr14	91155922	91155922	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggctctccgagtgagagtGtaggtttttgtgtttgctcc	14	8	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91155922	T	T	91155922	4	4	63	1	0	0	0	0	0	1	0	0	16839	1372	48	3	1675	3	TTC7B	14	91155922	Nonsense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	14825899	91155922	16193618	261	76389											
INF2	64423	broad.mit.edu	37	chr14	105170209	105170209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgaaatggggaaggcgGggagtggcctccgaaccctc	17	9	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105170209	T	T	105170209	1	4	63	0	1	0	0	0	0	0	0	0	7804	1247	43	2		2	INF2	14	105170209	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	14014287	105170209	2179331	262	76390											
GABRB3	2562	broad.mit.edu	37	chr15	26825498	26825498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacattcctcgagaccagaCggtgctccacgatggagaac	10	13	0	3	rs121913125		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26825498	A	A	26825498	3	1	63	1	0	0	0	0	1	0	0	0	6228	536	19	3	787	3	GABRB3	15	26825498	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08		26825498	75705894	263	76391											
OCA2	4948	broad.mit.edu	37	chr15	28000612	28000612	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacacaaccatcattgggaaGcccagcctgaaatacaaaga	8	11	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28000612	C	C	28000612	2	2	63	1	0	0	0	0	0	0	0	1	10910	958	34	4		4	OCA2	15	28000612	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1175114	28000612	74530780	264	76392											
TRPM1	4308	broad.mit.edu	37	chr15	31332302	31332302	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgtcaccctggcccgcctCgcagcacgttgcacgcacct	9	19	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31332302	A	A	31332302	1	1	63	0	1	0	0	0	0	0	0	0	16710	899	31	3		3	TRPM1	15	31332302	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3331690	31332302	71199090	265	76393											
TRPM1	4308	broad.mit.edu	37	chr15	31340014	31340014	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggaataataatacattttGaaaatttaaaacttgctctt	4	5	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31340014	T	T	31340014	1	4	63	0	1	0	0	0	0	0	0	0	16710	1305	45	3		3	TRPM1	15	31340014	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	7712	31340014	71191378	266	76394											
RYR3	6263	broad.mit.edu	37	chr15	33955863	33955863	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagttccgctacaatgagctCatgcaggccctgaacatgtc	9	12	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33955863	A	A	33955863	2	1	63	1	0	0	0	0	0	0	0	1	13881	813	29	3		3	RYR3	15	33955863	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2615849	33955863	68575529	267	76395											
C15orf55	256646	broad.mit.edu	37	chr15	34647923	34647923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgggcaggagcaagccCtagatagccccagagggatg	16	9	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34647923	A	A	34647923	3	1	63	1	0	0	0	0	1	0	0	0	1816	680	24	2	1656	2	C15orf55	15	34647923	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	692060	34647923	67883469	268	76396											
C15orf41	84529	broad.mit.edu	37	chr15	36911044	36911044	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagacaactataccagtttCtcctccaagtactacaaagc	4	14	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36911044	G	G	36911044	1	3	63	0	1	0	0	0	0	0	0	0	1808	928	32	4		4	C15orf41	15	36911044	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2263121	36911044	65620348	269	76397											
EIF2AK4	440275	broad.mit.edu	37	chr15	40259689	40259689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattagtggggtctctcttGctgcacacctgagccactca	9	13	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40259689	T	T	40259689	3	4	63	1	0	0	0	0	1	0	0	0	5039	1319	46	3	1196	3	EIF2AK4	15	40259689	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3348645	40259689	62271703	270	76398											
TTBK2	146057	broad.mit.edu	37	chr15	43086859	43086859	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacccaattgcagcaggggtCaagcgagtgtgcaactgagg	14	9	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43086859	T	T	43086859	2	4	63	1	0	0	0	0	0	0	0	1	16803	825	29	4		4	TTBK2	15	43086859	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2827170	43086859	59444533	271	76399											
FRMD5	84978	broad.mit.edu	37	chr15	44211933	44211933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccaccctccccaggggtGtggcttgagtcttttcatgg	12	13	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44211933	T	T	44211933	1	4	63	0	1	0	0	0	0	0	0	0	6113	1392	48	3		3	FRMD5	15	44211933	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1125074	44211933	58319459	272	76400											
MYO1E	4643	broad.mit.edu	37	chr15	59553679	59553679	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcatctgcttgaaagggttGactgagattaatacagatcc	11	7	1	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59553679	A	A	59553679	2	1	63	1	0	0	0	0	0	0	0	1	10166	1277	45	4		4	MYO1E	15	59553679	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	15341746	59553679	42977713	273	76401											
MAP2K1	5604	broad.mit.edu	37	chr15	66736990	66736990	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttttacattccctttcctCtaggtaataaaaggcctgac	5	11	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66736990	G	G	66736990	1	3	63	0	1	0	0	0	0	0	0	0	9328	928	32	4		4	MAP2K1	15	66736990	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	7183311	66736990	35794402	274	76402											
FANCI	55215	broad.mit.edu	37	chr15	89816700	89816700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacaaagatttcaggaccaGgtatttttttaaaatgccat	6	6	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89816700	T	T	89816700	3	4	63	1	0	0	0	0	1	0	0	0	5726	1014	35	2	1013	2	FANCI	15	89816700	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	23079710	89816700	12714692	275	76403											
ANPEP	290	broad.mit.edu	37	chr15	90348600	90348600	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtccttggggtggataaGcgtgatgttgaactcggcct	15	8	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90348600	A	A	90348600	3	1	63	1	0	0	0	0	1	0	0	0	710	971	34	4	2270	4	ANPEP	15	90348600	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	531900	90348600	12182792	276	76404											
ST8SIA2	8128	broad.mit.edu	37	chr15	92981563	92981563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctggagaatttcctcaCgcatgtttggttttcacagg	9	11	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92981563	A	A	92981563	1	1	63	0	1	0	0	0	0	0	0	0	15350	551	19	3		3	ST8SIA2	15	92981563	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2632963	92981563	9549829	277	76405											
ZSCAN10	84891	broad.mit.edu	37	chr16	3142081	3142081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcctggaatgtcttctgGggccccgggctcagcggctg	17	12	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3142081	T	T	3142081	2	4	63	1	0	0	0	0	0	0	0	1	18356	1219	43	2		2	ZSCAN10	16	3142081	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08		3142081	87212672	278	76406											
GRIN2A	2903	broad.mit.edu	37	chr16	10006438	10006438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttaagagtccttgctttGtatctcagtattgctagtta	8	7	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10006438	T	T	10006438	1	4	63	0	1	0	0	0	0	0	0	0	6845	1392	48	3		3	GRIN2A	16	10006438	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	6864357	10006438	80348315	279	76407											
BFAR	51283	broad.mit.edu	37	chr16	14738555	14738555	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttttttaacagagatggCgtctcgctatgttgcccagg	10	8	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14738555	T	T	14738555	1	4	63	0	1	0	0	0	0	0	0	0	1420	783	27	4		4	BFAR	16	14738555	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4732117	14738555	75616198	280	76408											
PRKCB	5579	broad.mit.edu	37	chr16	24135199	24135199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtcccggaagaaaagaCgaccaacactgtctccaaat	8	12	1	2	rs139055681	byFrequency;by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24135199	T	T	24135199	3	4	63	1	0	0	0	0	1	0	0	0	12614	536	19	4	996	4	PRKCB	16	24135199	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	9396644	24135199	66219554	281	76409											
SLC5A11	115584	broad.mit.edu	37	chr16	24909207	24909207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaacatgtgggaattatgGgagctacaattcaagatgag	11	6	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24909207	T	T	24909207	1	4	63	0	1	0	0	0	0	0	0	0	14777	1247	43	2		2	SLC5A11	16	24909207	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	774008	24909207	65445546	282	76410											
SPNS1	83985	broad.mit.edu	37	chr16	28994105	28994105	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattaaattagttaatagatGagctgggaacatggtcaact	10	4	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28994105	T	T	28994105	1	4	63	0	1	0	0	0	0	0	0	0	15192	1305	45	3		3	SPNS1	16	28994105	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4084898	28994105	61360648	283	76411											
CDH11	1009	broad.mit.edu	37	chr16	65005562	65005562	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaatcttggtccattggccGtgtcatccttgtcatctgca	8	11	4	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65005562	A	A	65005562	3	1	63	1	0	0	0	0	1	0	0	0	3127	1145	40	4	840	4	CDH11	16	65005562	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	36011457	65005562	25349191	284	76412											
FHOD1	29109	broad.mit.edu	37	chr16	67266053	67266053	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgatggcgttgctgcgcttGgggtccagcactgtggtcat	15	9	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67266053	C	C	67266053	2	2	63	1	0	0	0	0	0	0	0	1	5939	1335	47	4		4	FHOD1	16	67266053	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2260491	67266053	23088700	285	76413											
KCTD19	146212	broad.mit.edu	37	chr16	67338266	67338266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggaagccacttctgttagGgtgaggagagggaaagttgg	17	4	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67338266	A	A	67338266	1	1	63	0	1	0	0	0	0	0	0	0	8176	1247	43	4		4	KCTD19	16	67338266	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	72213	67338266	23016487	286	76414											
PDPR	55066	broad.mit.edu	37	chr16	70182490	70182499	+	Intron	DEL	CTTCCCTTCC	-	-													cttcccttcccttcccttcaCttcccttcccttcccttccc					rs71399995		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70182499	-	-	70182490	6	5	63	0	1	1	0	1	0	0	0	0	11783	580	20	0		0	PDPR	16	70182490	Intron	DEL	CTTCCCTTCC	TCGA-17-Z033-01A-01W-0746-08	2844224	70182490	20172263	287	76415											
CNTNAP4	85445	broad.mit.edu	37	chr16	76501344	76501344	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctatcagcggcaaagtggtaGatctgatttcagttcagcag	11	8	4	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76501344	T	T	76501344	3	4	63	1	0	0	0	0	1	0	0	0	3681	942	33	3	1630	3	CNTNAP4	16	76501344	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	6318854	76501344	13853409	288	76416											
ADAMTS18	170692	broad.mit.edu	37	chr16	77389870	77389870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagatactggcggctgcagGaagaccatgaaaacactcca	11	10	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77389870	T	T	77389870	3	4	63	1	0	0	0	0	1	0	0	0	263	1174	41	3	2298	3	ADAMTS18	16	77389870	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	888526	77389870	12964883	289	76417											
CDH13	1012	broad.mit.edu	37	chr16	83704557	83704557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccctcaaaccaacgaaGggatgctttctgttgtcaaa	7	12	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83704557	T	T	83704557	3	4	63	1	0	0	0	0	1	0	0	0	3129	1000	35	2	1298	2	CDH13	16	83704557	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	6314687	83704557	6650196	290	76418											
ATP2C2	9914	broad.mit.edu	37	chr16	84476176	84476176	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgtgatggggcagcccaccGagggtgcattgatggccctg	16	12	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84476176	A	A	84476176	3	1	63	1	0	0	0	0	1	0	0	0	1148	1059	37	4	1430	4	ATP2C2	16	84476176	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	771619	84476176	5878577	291	76419											
INPP5K	51763	broad.mit.edu	37	chr17	1399297	1399297	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccaggcctgggcctcaggGagccagtgatgagctcaagc	14	13	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1399297	A	A	1399297	1	1	63	0	1	0	0	0	0	0	0	0	7830	1189	41	4		4	INPP5K	17	1399297	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08		1399297	79795913	292	76420											
OR1E1	8387	broad.mit.edu	37	chr17	3300975	3300975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgacaccacagacaggtGggagccacaagtagagaagg	14	9	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3300975	T	T	3300975	3	4	63	1	0	0	0	0	1	0	0	0	11048	1348	47	2	218	2	OR1E1	17	3300975	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1901678	3300975	77894235	293	76421											
CHD3	1107	broad.mit.edu	37	chr17	7803982	7803982	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctgcggagactcaaggcaGatgtctttaagaacatgcca	11	9	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7803982	A	A	7803982	3	1	63	1	0	0	0	0	1	0	0	0	3357	942	33	4	3262	4	CHD3	17	7803982	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4503007	7803982	73391228	294	76422											
CHD3	1107	broad.mit.edu	37	chr17	7804438	7804438	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggccacggactgggtgtctGagaacaggaggaattgggaa	17	6	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7804438	C	C	7804438	1	2	63	0	1	0	0	0	0	0	0	0	3357	1305	45	4		4	CHD3	17	7804438	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	456	7804438	73390772	295	76423											
PFAS	5198	broad.mit.edu	37	chr17	8167643	8167643	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcgaatgggtgctgggcaaGatgcctcggaaggtatgtgg	17	7	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8167643	C	C	8167643	3	2	63	1	0	0	0	0	1	0	0	0	11849	933	33	4	1963	4	PFAS	17	8167643	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	363205	8167643	73027567	296	76424											
PIK3R5	23533	broad.mit.edu	37	chr17	8789713	8789713	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctcctccagcatagaccTgctggctctcccggggcagg	13	15	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8789713	A	A	8789713	1	1	63	0	1	0	0	0	0	0	0	0	12017	1595	55	5		5	PIK3R5	17	8789713	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	622070	8789713	72405497	297	76425											
MYH13	8735	broad.mit.edu	37	chr17	10222425	10222425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttccctggccagatctgaGcgctgcttctcaatcttggc	10	13	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10222425	T	T	10222425	2	4	63	1	0	0	0	0	0	0	0	1	10126	958	34	3		3	MYH13	17	10222425	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1432712	10222425	70972785	298	76426											
DNAH9	1770	broad.mit.edu	37	chr17	11584180	11584180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacagcagcaattctgggaGcaattccacaaagaagcccc	9	12	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11584180	T	T	11584180	3	4	63	1	0	0	0	0	1	0	0	0	4648	962	34	3	3791	3	DNAH9	17	11584180	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1361755	11584180	69611030	299	76427											
EPN2	22905	broad.mit.edu	37	chr17	19186825	19186825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtcaaagcaactggtGgctctcctcaaggacgagga	13	9	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19186825	T	T	19186825	2	4	63	1	0	0	0	0	0	0	0	1	5228	1335	47	2		2	EPN2	17	19186825	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	7602645	19186825	62008385	300	76428											
CYTSB	92521	broad.mit.edu	37	chr17	20210262	20210263	+	Intron	INS	-	AT	AT													taccaaaagactatttaaacINSatgaaagagataaaaggagg					rs151048199	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	20210263	AT	AT	20210262	6	5	63	0	1	1	1	0	0	0	0	0	4243	493	17	0		0	CYTSB	17	20210262	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	1023437	20210262	60984948	301	76429											
EFCAB5	374786	broad.mit.edu	37	chr17	28383151	28383151	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaacaggcaaacttaaTctatggtaactccaggttca	9	8	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28383151	A	A	28383151	3	1	63	1	0	0	0	0	1	0	0	0	4978	1435	50	5	2388	5	EFCAB5	17	28383151	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	8172889	28383151	52812059	302	76430											
RHBDL3	162494	broad.mit.edu	37	chr17	30643270	30643270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactggtcaggcatgaagtGccagttcaagctgctgcgga	14	9	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30643270	T	T	30643270	3	4	63	1	0	0	0	0	1	0	0	0	13432	1319	46	3	932	3	RHBDL3	17	30643270	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2260119	30643270	50551940	303	76431											
ACCN1	40	broad.mit.edu	37	chr17	31344547	31344547	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggcaccgccttccctctActatgattctgaacctgggg	10	13	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31344547	T	T	31344547	1	4	63	0	1	0	0	0	0	0	0	0	128	406	14	5		5	ACCN1	17	31344547	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	701277	31344547	49850663	304	76432											
SLFN13	146857	broad.mit.edu	37	chr17	33772525	33772525	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttccatctgaatcactcCtcctcctgagtttaataaag	4	12	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33772525	T	T	33772525	3	4	63	1	0	0	0	0	1	0	0	0	14850	690	24	4	2534	4	SLFN13	17	33772525	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2427978	33772525	47422685	305	76433											
MLLT6	4302	broad.mit.edu	37	chr17	36873842	36873842	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagcaccctcccctcctcTtctgcttctatctccaccac	2	22	4	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36873842	G	G	36873842	2	3	63	1	0	0	0	0	0	0	0	1	9723	1596	56	5		5	MLLT6	17	36873842	Silent	SNP	T	TCGA-17-Z033-01A-01W-0746-08	3101317	36873842	44321368	306	76434											
ITGA2B	3674	broad.mit.edu	37	chr17	42457539	42457539	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctggcagggcaagcagaAgagtcaggacctccctggcc	16	12	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42457539	G	G	42457539	1	3	63	0	1	0	0	0	0	0	0	0	7946	87	3	5		5	ITGA2B	17	42457539	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	5583697	42457539	38737671	307	76435											
GFAP	2670	broad.mit.edu	37	chr17	42991741	42991742	+	Intron	INS	-	CC	CC													cactcactgttgcacacacaINScacacacacacgcacatgtc					rs139158115	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	42991742	CC	CC	42991741	6	5	63	0	1	1	1	0	0	0	0	0	6401	174	6	0		0	GFAP	17	42991741	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	534202	42991741	38203469	308	76436											
CBX1	10951	broad.mit.edu	37	chr17	46152343	46152343	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagaagaaaaaaaacaacCacacagagccactggccgac	10	11	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46152343	T	T	46152343	1	4	63	0	1	0	0	0	0	0	0	0	2743	609	21	4		4	CBX1	17	46152343	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3160602	46152343	35042867	309	76437											
PCTP	58488	broad.mit.edu	37	chr17	53852237	53852237	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggtgagatcccaggaggTggggcggggggagggatggg	24	5	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53852237	G	G	53852237	1	3	63	0	1	0	0	0	0	0	0	0	11701	1711	59	5		5	PCTP	17	53852237	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	7699894	53852237	27342973	310	76438											
TMEM49	81671	broad.mit.edu	37	chr17	57915824	57915827	+	Intron	DEL	CTCA	-	-													ctgaaattacattcacagctCtcactcacatttttaggcaa							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57915827	-	-	57915824	6	5	63	0	1	1	0	1	0	0	0	0	16296	928	32	0		0	TMEM49	17	57915824	Intron	DEL	CTCA	TCGA-17-Z033-01A-01W-0746-08	4063587	57915824	23279386	311	76439											
SCN4A	6329	broad.mit.edu	37	chr17	62049174	62049174	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcgggccagtatcttgatGagggactcaaaggtgtagat	13	8	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62049174	C	C	62049174	2	2	63	1	0	0	0	0	0	0	0	1	14033	1277	45	4		4	SCN4A	17	62049174	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4133350	62049174	19146036	312	76440											
RGS9	8787	broad.mit.edu	37	chr17	63186286	63186286	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttctaacaactgtgtctCttccagatcatgtattacca	4	12	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63186286	T	T	63186286	1	4	63	0	1	0	0	0	0	0	0	0	13422	928	32	4		4	RGS9	17	63186286	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1137112	63186286	18008924	313	76441											
HN1	51155	broad.mit.edu	37	chr17	73142706	73142706	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgatttaaatcaagattcaGatctgtcctaaaaccatgga	6	7	3	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73142706	T	T	73142706	1	4	63	0	1	0	0	0	0	0	0	0	7316	957	33	3		3	HN1	17	73142706	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	9956420	73142706	8052504	314	76442											
RPTOR	57521	broad.mit.edu	37	chr17	78919633	78919633	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctgaccgacagccccagcGatgccctgttctcccccgat	10	18	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78919633	A	A	78919633	1	1	63	0	1	0	0	0	0	0	0	0	13776	1073	37	4		4	RPTOR	17	78919633	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	5776927	78919633	2275577	315	76443											
LAMA3	3909	broad.mit.edu	37	chr18	21474312	21474312	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctgcagaagaatgtgatGgtgagaaaagaaagcccctc	12	9	0	5			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21474312	C	C	21474312	3	2	63	1	0	0	0	0	1	0	0	0	8679	1362	47	4	5806	4	LAMA3	18	21474312	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08		21474312	56602936	316	76444											
CHST9	83539	broad.mit.edu	37	chr18	24532551	24532551	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccataggctctaacgtGtgaaataatttcttggatgt	9	6	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24532551	C	C	24532551	1	2	63	0	1	0	0	0	0	0	0	0	3442	1392	48	4		4	CHST9	18	24532551	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3058239	24532551	53544697	317	76445											
B4GALT6	9331	broad.mit.edu	37	chr18	29246141	29246141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctttaacaggaagttaCctgaaggcaaaacagactgt	8	8	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29246141	A	A	29246141	1	1	63	0	1	0	0	0	0	0	0	0	1280	522	18	3		3	B4GALT6	18	29246141	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4713590	29246141	48831107	318	76446											
KIAA0427	9811	broad.mit.edu	37	chr18	46284307	46284308	+	Frame_Shift_Ins	INS	-	G	G													aggcggcagcagagacctccINSggggggcaacaagccccaac					rs111264927		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46284308	G	G	46284307	7	5	63	1	0	1	1	0	0	0	0	0	8246	652	23	0	628	0	KIAA0427	18	46284307	Frame_Shift_Ins	INS	-	TCGA-17-Z033-01A-01W-0746-08	17038166	46284307	31792941	319	76447											
MALT1	10892	broad.mit.edu	37	chr18	56390406	56390406	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggacttcaaagtggtttCactgttggatcttactgaat	10	7	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56390406	T	T	56390406	3	4	63	1	0	0	0	0	1	0	0	0	9294	838	29	4	1183	4	MALT1	18	56390406	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	10106099	56390406	21686842	320	76448											
ATP9B	374868	broad.mit.edu	37	chr18	77097342	77097342	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaaggtggccgcggtagtcGagagcctggagagggagatg	19	7	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77097342	A	A	77097342	3	1	63	1	0	0	0	0	1	0	0	0	1203	1059	37	4	2250	4	ATP9B	18	77097342	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	20706936	77097342	979906	321	76449											
MUC16	94025	broad.mit.edu	37	chr19	8971891	8971891	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtcatcggttgctgtcttTaaagagcaaaagatctagag	12	6	3	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8971891	C	C	8971891	1	2	63	0	1	0	0	0	0	0	0	0	10067	1769	61	5		5	MUC16	19	8971891	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08		8971891	50157092	322	76450											
MUC16	94025	broad.mit.edu	37	chr19	9019961	9019961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agactctagaaggaaaagacTccaaccacatcacagctgct	7	12	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9019961	A	A	9019961	1	1	63	0	1	0	0	0	0	0	0	0	10067	1566	54	5		5	MUC16	19	9019961	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	48070	9019961	50109022	323	76451											
MUC16	94025	broad.mit.edu	37	chr19	9059040	9059040	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtggccttcatcatgataGaggtgaaaagagaagtgaca	12	6	2	5			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9059040	C	C	9059040	3	2	63	1	0	0	0	0	1	0	0	0	10067	942	33	4	15445	4	MUC16	19	9059040	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	39079	9059040	50069943	324	76452											
MUC16	94025	broad.mit.edu	37	chr19	9073841	9073841	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattggtcactgctttgttTatggaaggatgaatagtctc	10	5	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9073841	C	C	9073841	3	2	63	1	0	0	0	0	1	0	0	0	10067	1744	61	5	30246	5	MUC16	19	9073841	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	14801	9073841	50055142	325	76453											
RDH8	50700	broad.mit.edu	37	chr19	10131494	10131494	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgtgaggcgggcacgtGggcagagggggcttggagcc	20	8	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10131494	T	T	10131494	1	4	63	0	1	0	0	0	0	0	0	0	13304	1363	47	2		2	RDH8	19	10131494	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1057653	10131494	48997489	326	76454											
RAB3D	9545	broad.mit.edu	37	chr19	11446278	11446279	+	Intron	INS	-	G	G													ccagtggtgagccatgagccINSgggggggttaggggtcagag							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11446279	G	G	11446278	6	5	63	0	1	1	1	0	0	0	0	0	13042	667	23	0		0	RAB3D	19	11446278	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	1314784	11446278	47682705	327	76455											
RGL3	57139	broad.mit.edu	37	chr19	11515990	11515990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggggaacaggtcccgccCcagctcaccggctcactgcc	12	18	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11515990	A	A	11515990	1	1	63	0	1	0	0	0	0	0	0	0	13386	638	22	2		2	RGL3	19	11515990	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	69712	11515990	47612993	328	76456											
OR10H4	126541	broad.mit.edu	37	chr19	16059790	16059790	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccactgtcacttaattttGtttctgatctcaccagatac	4	11	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16059790	A	A	16059790	1	1	63	0	1	0	0	0	0	0	0	0	11002	1392	48	4		4	OR10H4	19	16059790	5'Flank	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4543800	16059790	43069193	329	76457											
HAUS8	93323	broad.mit.edu	37	chr19	17170423	17170423	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggtttctttgatattgTttttgctaactgtggcgtct	9	7	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17170423	C	C	17170423	3	2	63	1	0	0	0	0	1	0	0	0	7038	1725	60	5	892	5	HAUS8	19	17170423	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	1110633	17170423	41958560	330	76458											
ANO8	57719	broad.mit.edu	37	chr19	17438490	17438490	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctcggatctcttggcttCcccccacctgccactggccg	9	19	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17438490	T	T	17438490	1	4	63	0	1	0	0	0	0	0	0	0	703	870	30	4		4	ANO8	19	17438490	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	268067	17438490	41690493	331	76459											
UNC13A	23025	broad.mit.edu	37	chr19	17720637	17720637	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacctagaatgtggcccCtcccattcccgggcccagat	8	19	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17720637	T	T	17720637	1	4	63	0	1	0	0	0	0	0	0	0	17110	696	24	4		4	UNC13A	19	17720637	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	282147	17720637	41408346	332	76460											
RPL18A	6142	broad.mit.edu	37	chr19	17973709	17973709	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcaacaccgtcaccctggCcccgctcctttccacagacc	7	20	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17973709	G	G	17973709	1	3	63	0	1	0	0	0	0	0	0	0	13676	754	26	4		4	RPL18A	19	17973709	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	253072	17973709	41155274	333	76461											
ZNF708	7562	broad.mit.edu	37	chr19	21476864	21476864	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagggtttctctccagtatGaattttcttgtgattagtaa	9	5	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21476864	C	C	21476864	3	2	63	1	0	0	0	0	1	0	0	0	18240	1290	45	4	791	4	ZNF708	19	21476864	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3503155	21476864	37652119	334	76462											
ZNF100	163227	broad.mit.edu	37	chr19	21909553	21909553	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttagggactggttaaagtCtttaccacattcttcccatt	7	10	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21909553	T	T	21909553	3	4	63	1	0	0	0	0	1	0	0	0	17839	913	32	4	71	4	ZNF100	19	21909553	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	432689	21909553	37219430	335	76463											
ZNF100	163227	broad.mit.edu	37	chr19	21909994	21909994	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgccacattcttcacattTgtaaggtttctctccagcat	5	11	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21909994	G	G	21909994	3	3	63	1	0	0	0	0	1	0	0	0	17839	1821	63	5	512	5	ZNF100	19	21909994	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	441	21909994	37218989	336	76464											
ZNF536	9745	broad.mit.edu	37	chr19	30934457	30934457	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacggatctgaactctgccTctcttttcagggatggaaga	11	10	4	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30934457	A	A	30934457	1	1	63	0	1	0	0	0	0	0	0	0	18101	1566	54	5		5	ZNF536	19	30934457	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	9024463	30934457	28194526	337	76465											
ZNF536	9745	broad.mit.edu	37	chr19	30936718	30936718	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggttctgctcccaggcctCcagtcagttccaaggccagt	10	15	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30936718	A	A	30936718	1	1	63	0	1	0	0	0	0	0	0	0	18101	870	30	3		3	ZNF536	19	30936718	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	2261	30936718	28192265	338	76466											
ZNF383	163087	broad.mit.edu	37	chr19	37726372	37726372	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatataatgactcattttgtAttaccccacaatacaagcat	3	9	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37726372	T	T	37726372	1	4	63	0	1	0	0	0	0	0	0	0	18000	464	16	5		5	ZNF383	19	37726372	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	6789654	37726372	21402611	339	76467											
EGLN2	112398	broad.mit.edu	37	chr19	41292915	41292915	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggctttagggaggcagggCggcctcttgggcatggggga	22	7	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41292915	T	T	41292915	1	4	63	0	1	0	0	0	0	0	0	0	5009	783	27	4		4	EGLN2	19	41292915	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	3566543	41292915	17836068	340	76468											
CEACAM7	1087	broad.mit.edu	37	chr19	42187792	42187792	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacattcatagggtcctatGtcattctttgtggcgctgag	10	9	4	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42187792	A	A	42187792	2	1	63	1	0	0	0	0	0	0	0	1	3227	1368	48	4		4	CEACAM7	19	42187792	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	894877	42187792	16941191	341	76469											
NANOS2	339345	broad.mit.edu	37	chr19	46417902	46417902	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatcagcgcccacaccaccTggctcaggttgaagtagtcc	10	15	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46417902	A	A	46417902	3	1	63	1	0	0	0	0	1	0	0	0	10246	1580	55	5	370	5	NANOS2	19	46417902	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	4230110	46417902	12711081	342	76470											
NUCB1	4924	broad.mit.edu	37	chr19	49414515	49414516	+	Intron	DNP	GG	TT	TT													ctgctgatccagacggtaatGggagtgggtccggaggcaga							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	49414516	TT	TT	49414515	1	4	63	0	1	0	0	0	0	0	0	0	10813	1363	47	2		2	NUCB1	19	49414515	Intron	DNP	GG	TCGA-17-Z033-01A-01W-0746-08	2996613	49414515	9714468	343	76471											
KCNC3	3748	broad.mit.edu	37	chr19	50826952	50826952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgaagatgcgcaggatgcGgacgaagcggaccacccgca	14	12	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50826952	A	A	50826952	3	1	63	1	0	0	0	0	1	0	0	0	8086	1116	39	4	1027	4	KCNC3	19	50826952	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1412437	50826952	8302031	344	76472											
FPR1	2357	broad.mit.edu	37	chr19	52249646	52249646	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatgaaccggatgatgcctCtcaccgtcaacatggcaacg	10	12	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52249646	T	T	52249646	3	4	63	1	0	0	0	0	1	0	0	0	6098	913	32	4	454	4	FPR1	19	52249646	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1422694	52249646	6879337	345	76473											
ZNF160	90338	broad.mit.edu	37	chr19	53577369	53577369	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctagttaatgagtggccttCtctctgcccatctgagctct	8	12	5	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53577369	A	A	53577369	1	1	63	0	1	0	0	0	0	0	0	0	17865	928	32	3		3	ZNF160	19	53577369	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1327723	53577369	5551614	346	76474											
ZNF415	55786	broad.mit.edu	37	chr19	53611628	53611628	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgactgaagaccttgccaTattaatttcttttataaggt	6	6	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53611628	C	C	53611628	1	2	63	0	1	0	0	0	0	0	0	0	18019	1421	49	5		5	ZNF415	19	53611628	3'UTR	SNP	T	TCGA-17-Z033-01A-01W-0746-08	34259	53611628	5517355	347	76475											
LILRA2	11027	broad.mit.edu	37	chr19	55087024	55087025	+	Intron	DNP	GG	AT	AT													gacatcctgatcacaggtgaGgagcccagcgggttcagtca							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	55087025	AT	AT	55087024	1	1	63	0	1	0	0	0	0	0	0	0	8857	1015	35	4		4	LILRA2	19	55087024	Intron	DNP	GG	TCGA-17-Z033-01A-01W-0746-08	1475396	55087024	4041959	348	76476											
FIZ1	84922	broad.mit.edu	37	chr19	56109421	56109422	+	Intron	DEL	CT	-	-													tgttctttaaaatcctcctaCtctcttagaaacccttctct							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56109422	-	-	56109421	6	5	63	0	1	1	0	1	0	0	0	0	5957	580	20	0		0	FIZ1	19	56109421	Intron	DEL	CT	TCGA-17-Z033-01A-01W-0746-08	1022397	56109421	3019562	349	76477											
U2AF2	11338	broad.mit.edu	37	chr19	56171027	56171028	+	Intron	INS	-	T	T													ttgttctctgtctctgactcINStgagggcctgttccttcttt					rs140547487	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56171028	T	T	56171027	6	5	63	0	1	1	1	0	0	0	0	0	16949	928	32	0		0	U2AF2	19	56171027	Intron	INS	-	TCGA-17-Z033-01A-01W-0746-08	61606	56171027	2957956	350	76478											
ZNF71	58491	broad.mit.edu	37	chr19	57133886	57133886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccggggagaagccctacGtgtgcggcgagtgcggcaag	17	11	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57133886	T	T	57133886	3	4	63	1	0	0	0	0	1	0	0	0	18242	1145	40	3	1233	3	ZNF71	19	57133886	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	962859	57133886	1995097	351	76479											
ZNF548	147694	broad.mit.edu	37	chr19	57905546	57905546	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caatttctcacggcctttctCttccctcagggtcccctggc	7	17	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57905546	G	G	57905546	1	3	63	0	1	0	0	0	0	0	0	0	18107	928	32	4		4	ZNF548	19	57905546	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	771660	57905546	1223437	352	76480											
CSNK2A1	1457	broad.mit.edu	37	chr20	470561	470561	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactgttattatctgtgaAtcctcaggcttgtcacttca	6	11	5	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	470561	C	C	470561	1	2	63	0	1	0	0	0	0	0	0	0	3991	116	4	5		5	CSNK2A1	20	470561	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08		470561	62554959	353	76481											
SNPH	9751	broad.mit.edu	37	chr20	1258326	1258326	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtccgtgtgtgtccAtgtgtgtgcctgtgtgtctg	16	7	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1258326	G	G	1258326	1	3	63	0	1	0	0	0	0	0	0	0	14964	232	8	5		5	SNPH	20	1258326	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	787765	1258326	61767194	354	76482											
PDYN	5173	broad.mit.edu	37	chr20	1961230	1961230	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcgtttgacctgctccttGgggtcctcctcagcgagata	11	12	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1961230	T	T	1961230	2	4	63	1	0	0	0	0	0	0	0	1	11793	1335	47	2		2	PDYN	20	1961230	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	702904	1961230	61064290	355	76483											
TMC2	117532	broad.mit.edu	37	chr20	2616585	2616585	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcagcttggccatttacTacctgaactcagtttccaaa	6	12	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2616585	A	A	2616585	3	1	63	1	0	0	0	0	1	0	0	0	16108	1522	53	5	2390	5	TMC2	20	2616585	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	655355	2616585	60408935	356	76484											
C20orf196	149840	broad.mit.edu	37	chr20	5753463	5753463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaatgaaggatcctgctAtgtggtgccttttgtactga	10	9	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5753463	G	G	5753463	1	3	63	0	1	0	0	0	0	0	0	0	2123	464	16	5		5	C20orf196	20	5753463	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	3136878	5753463	57272057	357	76485											
MACROD2	140733	broad.mit.edu	37	chr20	14108533	14108533	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttcccaactagatcttTgaattggttgcatcataaat	6	7	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14108533	C	C	14108533	1	2	63	0	1	0	0	0	0	0	0	0	9234	1827	63	5		5	MACROD2	20	14108533	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	8355070	14108533	48916987	358	76486											
PPP1R16B	26051	broad.mit.edu	37	chr20	37531189	37531189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatctatgggcatgtctGcatgcccgcttgactggcat	11	10	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37531189	T	T	37531189	1	4	63	0	1	0	0	0	0	0	0	0	12467	1334	46	3		3	PPP1R16B	20	37531189	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	23422656	37531189	25494331	359	76487											
PTPRT	11122	broad.mit.edu	37	chr20	41515516	41515516	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgaacagggctttgaaGgatgggagcatctccatggg	16	6	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41515516	A	A	41515516	1	1	63	0	1	0	0	0	0	0	0	0	12920	1015	35	4		4	PTPRT	20	41515516	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3984327	41515516	21510004	360	76488											
R3HDML	140902	broad.mit.edu	37	chr20	42972002	42972002	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcacccagcttcttccgtgtCccccgcctccccaggtaccg	7	21	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42972002	T	T	42972002	1	4	63	0	1	0	0	0	0	0	0	0	12997	870	30	4		4	R3HDML	20	42972002	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1456486	42972002	20053518	361	76489											
SYS1	90196	broad.mit.edu	37	chr20	43995536	43995536	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccctgggcttgctgtacttCatccggcgaggaaagcagtg	14	11	1	0	rs142015382		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43995536	T	T	43995536	2	4	63	1	0	0	0	0	0	0	0	1	15583	825	29	4		4	SYS1	20	43995536	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1023534	43995536	19029984	362	76490											
PLTP	5360	broad.mit.edu	37	chr20	44536190	44536190	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcccagacagaaatgagcActtcacccaaaatcgcacaa	6	13	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44536190	T	T	44536190	1	4	63	0	1	0	0	0	0	0	0	0	12209	174	6	5		5	PLTP	20	44536190	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	540654	44536190	18489330	363	76491											
CYP24A1	1591	broad.mit.edu	37	chr20	52788041	52788041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttttcctttgttctttgTagctgtgacttgaagctcca	7	9	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52788041	C	C	52788041	1	2	63	0	1	0	0	0	0	0	0	0	4187	1653	57	5		5	CYP24A1	20	52788041	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	8251851	52788041	10237479	364	76492											
VAPB	9217	broad.mit.edu	37	chr20	57019366	57019366	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaatttatcataaccatGtgtaaaaagaaattaatgta	4	3	1	1	rs138521885	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57019366	T	T	57019366	1	4	63	0	1	0	0	0	0	0	0	0	17249	1392	48	3		3	VAPB	20	57019366	3'UTR	SNP	G	TCGA-17-Z033-01A-01W-0746-08	4231325	57019366	6006154	365	76493											
RBM11	54033	broad.mit.edu	37	chr21	15599378	15599378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacctttatcagatgacaGctccacttcctaatagtgca	6	12	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15599378	T	T	15599378	3	4	63	1	0	0	0	0	1	0	0	0	13220	971	34	3	628	3	RBM11	21	15599378	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08		15599378	32530517	366	76494											
PIGP	51227	broad.mit.edu	37	chr21	38437987	38437987	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctcctcttggtatttcttCtgctgttgattttttgcata	7	9	3	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38437987	A	A	38437987	3	1	63	1	0	0	0	0	1	0	0	0	11990	912	32	3	108	3	PIGP	21	38437987	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	22838609	38437987	9691908	367	76495											
PCBP3	54039	broad.mit.edu	37	chr21	47217813	47217813	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatgcatggatggatgaGtgcatggatccatagagaga	15	4	0	4	rs139090313	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47217813	A	A	47217813	1	1	63	0	1	0	0	0	0	0	0	0	11596	1044	36	4		4	PCBP3	21	47217813	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	8779826	47217813	912082	368	76496											
PCBP3	54039	broad.mit.edu	37	chr21	47217824	47217824	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggatgagtgcatggatcCatagagagagtgaatggatg	16	3	0	4	rs149941368	by1000genomes	TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47217824	T	T	47217824	1	4	63	0	1	0	0	0	0	0	0	0	11596	609	21	4		4	PCBP3	21	47217824	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	11	47217824	912071	369	76497											
RNF215	200312	broad.mit.edu	37	chr22	30776225	30776225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacgggcacagtcttgcaGgtccaagggctgagggtgct	17	9	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30776225	T	T	30776225	1	4	63	0	1	0	0	0	0	0	0	0	13590	1015	35	2		2	RNF215	22	30776225	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08		30776225	20528341	370	76498											
LARGE	9215	broad.mit.edu	37	chr22	33960658	33960658	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaagtttctgttttactcTattatttttcaaatccaagc	3	8	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33960658	C	C	33960658	1	2	63	0	1	0	0	0	0	0	0	0	8699	1537	53	5		5	LARGE	22	33960658	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	3184433	33960658	17343908	371	76499											
EP300	2033	broad.mit.edu	37	chr22	41572157	41572157	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcttgagcccaggaggcaGaggttgtagtgagccaagat	15	7	0	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41572157	C	C	41572157	1	2	63	0	1	0	0	0	0	0	0	0	5190	957	33	4		4	EP300	22	41572157	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	7611499	41572157	9732409	372	76500											
EP300	2033	broad.mit.edu	37	chr22	41572505	41572505	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatgcaagcaccatgtggaGacacgctggcactgtactgt	12	10	0	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41572505	A	A	41572505	2	1	63	1	0	0	0	0	0	0	0	1	5190	933	33	4		4	EP300	22	41572505	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	348	41572505	9732061	373	76501											
SULT4A1	25830	broad.mit.edu	37	chr22	44234824	44234824	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgcagagagcggtggaacTgataataagacaccaccaga	11	10	0	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44234824	A	A	44234824	3	1	63	1	0	0	0	0	1	0	0	0	15501	1580	55	5	439	5	SULT4A1	22	44234824	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	2662319	44234824	7069742	374	76502											
FRMPD4	9758	broad.mit.edu	37	chrX	12632857	12632857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcttgggataggttgcTaatggtcttctcacctgtgc	14	8	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12632857	C	C	12632857	1	2	63	0	1	0	0	0	0	0	0	0	6119	1537	53	5		5	FRMPD4	23	12632857	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08		12632857	142637703	375	76503											
EGFL6	25975	broad.mit.edu	37	chrX	13645150	13645150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattggcttctatatggcaGttccggccttggcaggtcac	11	11	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645150	T	T	13645150	3	4	63	1	0	0	0	0	1	0	0	0	5003	1029	36	3	1351	3	EGFL6	23	13645150	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1012293	13645150	141625410	376	76504											
CNKSR2	22866	broad.mit.edu	37	chrX	21393226	21393226	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggcgggggtcctccaggActggcaggggcctggggtcc	21	12	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21393226	C	C	21393226	1	2	63	0	1	0	0	0	0	0	0	0	3639	290	10	5		5	CNKSR2	23	21393226	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	7748076	21393226	133877334	377	76505											
CNKSR2	22866	broad.mit.edu	37	chrX	21627328	21627328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcccattcgcaagacagCcagtcagcgccgctcctggc	10	17	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21627328	A	A	21627328	3	1	63	1	0	0	0	0	1	0	0	0	3639	739	26	3	2363	3	CNKSR2	23	21627328	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	234102	21627328	133643232	378	76506											
PHEX	5251	broad.mit.edu	37	chrX	22117197	22117197	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgaaagacatcagcccctCcgagaatgtggtggtccgcg	12	12	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22117197	T	T	22117197	3	4	63	1	0	0	0	0	1	0	0	0	11914	855	30	4	1041	4	PHEX	23	22117197	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	489869	22117197	133153363	379	76507											
FAM47B	170062	broad.mit.edu	37	chrX	34961740	34961740	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctctgcccagagcctccCaagactctggtgtccagtgt	9	15	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34961740	A	A	34961740	2	1	63	1	0	0	0	0	0	0	0	1	5621	581	21	2		2	FAM47B	23	34961740	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	12844543	34961740	120308820	380	76508											
TSPAN7	7102	broad.mit.edu	37	chrX	38540557	38540557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtagcctacataattGtgcagaacctggtctaacct	8	12	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38540557	T	T	38540557	1	4	63	0	1	0	0	0	0	0	0	0	16777	1392	48	3		3	TSPAN7	23	38540557	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3578817	38540557	116730003	381	76509											
ZNF673	55634	broad.mit.edu	37	chrX	46316286	46316286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgcaggatggtatgtaaTgagttgagtcggaatccaat	13	4	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46316286	C	C	46316286	1	2	63	0	1	0	0	0	0	0	0	0	18207	1479	51	5		5	ZNF673	23	46316286	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	7775729	46316286	108954274	382	76510											
SYN1	6853	broad.mit.edu	37	chrX	47466579	47466579	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttctccatggatctttttCcctttgaagtattttgccct	5	10	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47466579	T	T	47466579	2	4	63	1	0	0	0	0	0	0	0	1	15559	842	30	4		4	SYN1	23	47466579	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1150293	47466579	107803981	383	76511											
AKAP4	8852	broad.mit.edu	37	chrX	49955866	49955866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacccctaacctcctcacccAcacccaccaccttcccgccc	1	26	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49955866	G	G	49955866	1	3	63	0	1	0	0	0	0	0	0	0	453	174	6	5		5	AKAP4	23	49955866	Intron	SNP	A	TCGA-17-Z033-01A-01W-0746-08	2489287	49955866	105314694	384	76512											
SHROOM4	57477	broad.mit.edu	37	chrX	50378103	50378103	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccactgaggcaacagaaccTattagggttccttgcgggta	11	11	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50378103	C	C	50378103	3	2	63	1	0	0	0	0	1	0	0	0	14409	1521	53	5	3535	5	SHROOM4	23	50378103	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	422237	50378103	104892457	385	76513											
SMC1A	8243	broad.mit.edu	37	chrX	53438899	53438899	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggatgaccaagtcagcagaTgtcagcccagggatctcctc	12	12	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53438899	A	A	53438899	1	1	63	0	1	0	0	0	0	0	0	0	14895	1479	51	5		5	SMC1A	23	53438899	Intron	SNP	T	TCGA-17-Z033-01A-01W-0746-08	3060796	53438899	101831661	386	76514											
TRO	7216	broad.mit.edu	37	chrX	54957787	54957787	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatggaaaaatctgtttGctgttcctgctttattgttt	9	5	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54957787	T	T	54957787	1	4	63	0	1	0	0	0	0	0	0	0	16699	1334	46	3		3	TRO	23	54957787	3'UTR	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1518888	54957787	100312773	387	76515											
FAM104B	90736	broad.mit.edu	37	chrX	55187515	55187515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaagcaaagcgtgatgaCcgtggggaccagagctcgga	16	8	0	4			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55187515	A	A	55187515	1	1	63	0	1	0	0	0	0	0	0	0	5432	522	18	3		3	FAM104B	23	55187515	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	229728	55187515	100083045	388	76516											
SPIN3	169981	broad.mit.edu	37	chrX	57020599	57020599	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttggcaaatttcaagatGacctctaagatgtttttacc	6	7	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57020599	A	A	57020599	1	1	63	0	1	0	0	0	0	0	0	0	15173	1305	45	4		4	SPIN3	23	57020599	3'UTR	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1833084	57020599	98249961	389	76517											
ZXDA	7789	broad.mit.edu	37	chrX	57934639	57934639	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagacactgttttcacaaAgggtgctcgaaggagtcaga	12	8	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57934639	T	T	57934639	3	4	63	1	0	0	0	0	1	0	0	0	18379	72	3	5	187	5	ZXDA	23	57934639	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	914040	57934639	97335921	390	76518											
FAM123B	139285	broad.mit.edu	37	chrX	63412038	63412038	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcttcctcctcgtcatcatCatctggcaaggccatctcct	5	16	6	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63412038	T	T	63412038	3	4	63	1	0	0	0	0	1	0	0	0	5469	826	29	4	2282	4	FAM123B	23	63412038	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	5477399	63412038	91858522	391	76519											
STARD8	9754	broad.mit.edu	37	chrX	67932897	67932897	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcatctgttagatggggCaagtcagattctctttccaa	8	8	4	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67932897	T	T	67932897	1	4	63	0	1	0	0	0	0	0	0	0	15381	725	25	4		4	STARD8	23	67932897	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4520859	67932897	87337663	392	76520											
KIF4A	24137	broad.mit.edu	37	chrX	69595967	69595967	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatgatgaaaaaccagcgGgtacagttaatgcgtcaaat	10	6	1	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69595967	T	T	69595967	2	4	63	1	0	0	0	0	0	0	0	1	8373	1219	43	2		2	KIF4A	23	69595967	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1663070	69595967	85674593	393	76521											
TAF1	6872	broad.mit.edu	37	chrX	70602999	70602999	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacctttgctaaagcacatCaaaaaaaaggccaaggtata	6	9	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70602999	G	G	70602999	3	3	63	1	0	0	0	0	1	0	0	0	15632	816	29	4	2038	4	TAF1	23	70602999	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1007032	70602999	84667561	394	76522											
SLC16A2	6567	broad.mit.edu	37	chrX	73740727	73740727	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgcagaccaatgcaatGccccctgtgaaaggccagag	11	12	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73740727	C	C	73740727	1	2	63	0	1	0	0	0	0	0	0	0	14521	1334	46	4		4	SLC16A2	23	73740727	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3137728	73740727	81529833	395	76523											
UPRT	139596	broad.mit.edu	37	chrX	74513312	74513312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatctttttttaggacagCcagtagaggtgacttcatgt	9	6	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74513312	A	A	74513312	3	1	63	1	0	0	0	0	1	0	0	0	17140	739	26	3	398	3	UPRT	23	74513312	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	772585	74513312	80757248	396	76524											
ZNF711	7552	broad.mit.edu	37	chrX	84526774	84526774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaattctgcaagaagggattCcgaagaccatcagaaaaaaa	9	7	2	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84526774	A	A	84526774	3	1	63	1	0	0	0	0	1	0	0	0	18244	854	30	3	2252	3	ZNF711	23	84526774	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	10013462	84526774	70743786	397	76525											
PCDH11X	27328	broad.mit.edu	37	chrX	91238016	91238016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttgctctgggtcactcCggactttgcagtctcaaaat	9	10	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91238016	A	A	91238016	1	1	63	0	1	0	0	0	0	0	0	0	11602	667	23	1		1	PCDH11X	23	91238016	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	6711242	91238016	64032544	398	76526											
DRP2	1821	broad.mit.edu	37	chrX	100496609	100496609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtctctttctttgagCtgaccctgcctggttggcct	9	12	3	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100496609	A	A	100496609	1	1	63	0	1	0	0	0	0	0	0	0	4804	812	28	3		3	DRP2	23	100496609	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	9258593	100496609	54773951	399	76527											
NXF3	56000	broad.mit.edu	37	chrX	102332439	102332439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcgcccgcctcggcctccCaaagtgctgggattacaggc	11	15	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102332439	A	A	102332439	1	1	63	0	1	0	0	0	0	0	0	0	10880	609	21	2		2	NXF3	23	102332439	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	1835830	102332439	52938121	400	76528											
NXF3	56000	broad.mit.edu	37	chrX	102335100	102335100	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggttggtaacctcttgtgGgcttcagtaccacataaagt	10	9	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102335100	A	A	102335100	2	1	63	1	0	0	0	0	0	0	0	1	10880	1219	43	4		4	NXF3	23	102335100	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	2661	102335100	52935460	401	76529											
GLRA4	441509	broad.mit.edu	37	chrX	102962325	102962325	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcccttagaagaggggctgGaggttggggactataaatgc	15	6	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102962325	A	A	102962325	3	1	63	1	0	0	0	0	1	0	0	0	6521	1174	41	4	55	4	GLRA4	23	102962325	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	627225	102962325	52308235	402	76530											
RNF128	79589	broad.mit.edu	37	chrX	106034546	106034546	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtactcttgctttttagcGtttgttccattcagccatta	6	9	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106034546	C	C	106034546	1	2	63	0	1	0	0	0	0	0	0	0	13547	1160	40	4		4	RNF128	23	106034546	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3072221	106034546	49236014	403	76531											
COL4A5	1287	broad.mit.edu	37	chrX	107911647	107911647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtttccctggtgtgcagGgtcccccaggccctcctggt	13	15	0	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107911647	T	T	107911647	3	4	63	1	0	0	0	0	1	0	0	0	3726	1232	43	2	3865	2	COL4A5	23	107911647	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1877101	107911647	47358913	404	76532											
AMMECR1	9949	broad.mit.edu	37	chrX	109444355	109444355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaatacaaaatgactttGtagaggtcagctatcactgt	7	6	2	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109444355	T	T	109444355	1	4	63	0	1	0	0	0	0	0	0	0	578	1392	48	3		3	AMMECR1	23	109444355	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1532708	109444355	45826205	405	76533											
ALG13	79868	broad.mit.edu	37	chrX	110988105	110988105	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacctccaccttattcctgtGatccaagcggcagtgatttg	8	13	0	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110988105	C	C	110988105	3	2	63	1	0	0	0	0	1	0	0	0	515	1290	45	4	3141	4	ALG13	23	110988105	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1543750	110988105	44282455	406	76534											
TRPC5	7224	broad.mit.edu	37	chrX	111095552	111095552	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataggccacaatcttcagggAaatagttgccaggtagaggg	13	7	2	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111095552	T	T	111095552	3	4	63	1	0	0	0	0	1	0	0	0	16707	246	9	5	1598	5	TRPC5	23	111095552	Missense_Mutation	SNP	A	TCGA-17-Z033-01A-01W-0746-08	107447	111095552	44175008	407	76535											
SLC6A14	11254	broad.mit.edu	37	chrX	115565696	115565697	+	5'Flank	INS	-	ATT	ATT													aaggcactgaggtgagaaacINSatgtctgtgacatacacact					rs147517599		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATT	115565697	ATT	ATT	115565696	6	5	63	0	1	1	1	0	0	0	0	0	14791	493	17	0		0	SLC6A14	23	115565696	5'Flank	INS	-	TCGA-17-Z033-01A-01W-0746-08	4470144	115565696	39704864	408	76536											
GLUD2	2747	broad.mit.edu	37	chrX	120182570	120182570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatccagatggtattgaCccaaaggaactggaagactt	11	7	0	3			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120182570	A	A	120182570	3	1	63	1	0	0	0	0	1	0	0	0	6541	506	18	3	1034	3	GLUD2	23	120182570	Missense_Mutation	SNP	C	TCGA-17-Z033-01A-01W-0746-08	4616874	120182570	35087990	409	76537											
ODZ1	10178	broad.mit.edu	37	chrX	123519489	123519489	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatgtcataagaaaatagtGatgttgttgtacacaccacc	7	7	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123519489	T	T	123519489	1	4	63	0	1	0	0	0	0	0	0	0	10929	1305	45	3		3	ODZ1	23	123519489	Intron	SNP	G	TCGA-17-Z033-01A-01W-0746-08	3336919	123519489	31751071	410	76538											
ODZ1	10178	broad.mit.edu	37	chrX	123519887	123519887	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcaaagatgtaacgccGctggctgtgtaggagaagca	12	8	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123519887	T	T	123519887	2	4	63	1	0	0	0	0	0	0	0	1	10929	1086	38	3		3	ODZ1	23	123519887	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	398	123519887	31750673	411	76539											
ARHGAP36	158763	broad.mit.edu	37	chrX	130199016	130199017	+	Intron	DEL	TG	-	-													caaggaagtgtgtgtgtgttTgtgtgtgtgtgtgtgtgtgt					rs140823879		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130199017	-	-	130199016	6	5	63	0	1	1	0	1	0	0	0	0	885	1827	63	0		0	ARHGAP36	23	130199016	Intron	DEL	TG	TCGA-17-Z033-01A-01W-0746-08	6679129	130199016	25071544	412	76540											
SAGE1	55511	broad.mit.edu	37	chrX	134990727	134990727	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatgttctatccgggctTattaatatggcaggagctag	10	7	2	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134990727	A	A	134990727	2	1	63	1	0	0	0	0	0	0	0	1	13920	1741	61	5		5	SAGE1	23	134990727	Silent	SNP	T	TCGA-17-Z033-01A-01W-0746-08	4791711	134990727	20279833	413	76541											
SPANXN4	441525	broad.mit.edu	37	chrX	142113847	142113848	+	Missense_Mutation	DNP	CC	AG	AG													cgagaataaaatgaagagccCctgtgaatctaacaaaagaa							TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	142113848	AG	AG	142113847	3	1	63	1	0	0	0	0	1	0	0	0	15109	623	22	2	49	2	SPANXN4	23	142113847	Missense_Mutation	DNP	CC	TCGA-17-Z033-01A-01W-0746-08	7123120	142113847	13156713	414	76542											
UBE2NL	389898	broad.mit.edu	37	chrX	142967318	142967318	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgttattttcatgtggtcaTtgctggggaatcaaaggatt	11	6	3	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142967318	A	A	142967318	3	1	63	1	0	0	0	0	1	0	0	0	16993	1493	52	5	118	5	UBE2NL	23	142967318	Missense_Mutation	SNP	T	TCGA-17-Z033-01A-01W-0746-08	853471	142967318	12303242	415	76543											
MAGEA4	4103	broad.mit.edu	37	chrX	151092880	151092880	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccaggaaactgctcacCcaagattgggtgcaggaaaa	12	10	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151092880	A	A	151092880	2	1	63	1	0	0	0	0	0	0	0	1	9258	610	22	2		2	MAGEA4	23	151092880	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	8125562	151092880	4177680	416	76544											
PNCK	139728	broad.mit.edu	37	chrX	152937446	152937446	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggagccgcgctccatgatGcggtcaaacagctcgccacc	11	15	1	1			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152937446	T	T	152937446	2	4	63	1	0	0	0	0	0	0	0	1	12240	1306	46	3		3	PNCK	23	152937446	Silent	SNP	G	TCGA-17-Z033-01A-01W-0746-08	1844566	152937446	2333114	417	76545											
HCFC1	3054	broad.mit.edu	37	chrX	153230086	153230086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaccatcccaccaaacacCaggaggcgagtcccgtcaca	7	18	1	0			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153230086	A	A	153230086	2	1	63	1	0	0	0	0	0	0	0	1	7057	581	21	2		2	HCFC1	23	153230086	Silent	SNP	C	TCGA-17-Z033-01A-01W-0746-08	292640	153230086	2040474	418	76546											
TKTL1	8277	broad.mit.edu	37	chrX	153537912	153537912	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgaagggccagtccccatCacatcccgtggtgacccctc	9	18	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153537912	G	G	153537912	1	3	63	0	1	0	0	0	0	0	0	0	16058	841	29	4		4	TKTL1	23	153537912	Intron	SNP	C	TCGA-17-Z033-01A-01W-0746-08	307826	153537912	1732648	419	76547											
GAB3	139716	broad.mit.edu	37	chrX	153925479	153925479	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttctcaggtccagaggaGgtggccgtgctacaagacag	15	9	1	2			TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153925479	A	A	153925479	3	1	63	1	0	0	0	0	1	0	0	0	6210	1000	35	4	424	4	GAB3	23	153925479	Missense_Mutation	SNP	G	TCGA-17-Z033-01A-01W-0746-08	387567	153925479	1345081	420	76548											
RAP1GAP	5909	broad.mit.edu	37	chr1	21940126	21940126	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcggagacctcacctttgCcatctggacaacattaggga	11	11	2	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21940126	G	G	21940126	3	3	64	1	0	0	0	0	1	0	0	0	13145	739	26	4	1668	4	RAP1GAP	1	21940126	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08		21940126	227310495	1	76549											
MECR	51102	broad.mit.edu	37	chr1	29543028	29543028	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcatttcacacccacacctGaggaggaatgaaaatgaggt	11	9	1	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29543028	A	A	29543028	1	1	64	0	1	0	0	0	0	0	0	0	9517	1305	45	4		4	MECR	1	29543028	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	7602902	29543028	219707593	2	76550											
CSMD2	114784	broad.mit.edu	37	chr1	34049155	34049155	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttctggcaagccctgatAggaaaactgcagcacagact	10	11	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34049155	G	G	34049155	1	3	64	0	1	0	0	0	0	0	0	0	3979	435	15	5		5	CSMD2	1	34049155	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08	4506127	34049155	215201466	3	76551											
ZNF684	127396	broad.mit.edu	37	chr1	41007376	41007376	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcgaatccacacgagagcTctccaggtgagtgagagaaa	13	9	1	4			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41007376	G	G	41007376	3	3	64	1	0	0	0	0	1	0	0	0	18218	1551	54	5	242	5	ZNF684	1	41007376	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08	6958221	41007376	208243245	4	76552											
FOXJ3	22887	broad.mit.edu	37	chr1	42664850	42664850	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgagagactgttgttaaGgctactgcgtgggctatcac	13	8	2	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42664850	A	A	42664850	3	1	64	1	0	0	0	0	1	0	0	0	6073	1000	35	4	1214	4	FOXJ3	1	42664850	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	1657474	42664850	206585771	5	76553											
NEXN	91624	broad.mit.edu	37	chr1	78383759	78383759	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaatagtaaattaaattGcaaaatagaaacataaccaa	5	4	0	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78383759	A	A	78383759	1	1	64	0	1	0	0	0	0	0	0	0	10450	1334	46	4		4	NEXN	1	78383759	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	35718909	78383759	170866862	6	76554											
NTNG1	22854	broad.mit.edu	37	chr1	107866881	107866881	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaccagtgttttgatgcacGctcttttgttcttcttccat	6	10	3	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107866881	A	A	107866881	1	1	64	0	1	0	0	0	0	0	0	0	10799	1102	38	4		4	NTNG1	1	107866881	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	29483122	107866881	141383740	7	76555											
NBPF9	400818	broad.mit.edu	37	chr1	144617401	144617401	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacacacaaatatttatcagAgaacaaggataataataagt	6	5	1	1	rs111786263		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144617401	T	T	144617401	1	4	64	0	1	0	0	0	0	0	0	0	10294	319	11	5		5	NBPF9	1	144617401	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08	36750520	144617401	104633220	8	76556											
PDE4DIP	9659	broad.mit.edu	37	chr1	144996854	144996855	+	5'Flank	INS	-	T	T													atggctttaaaaattggtgaINSttttttttttttttgagaca					rs5777506		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144996855	T	T	144996854	6	5	64	0	1	1	1	0	0	0	0	0	11737	348	12	0		0	PDE4DIP	1	144996854	5'Flank	INS	-	TCGA-17-Z035-01A-01W-0746-08	379453	144996854	104253767	9	76557											
NBPF9	400818	broad.mit.edu	37	chr1	145205810	145205810	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcactgctccccagtttataTagatatatatgttcctcatt	5	10	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145205810	C	C	145205810	1	2	64	0	1	0	0	0	0	0	0	0	10294	1421	49	5		5	NBPF9	1	145205810	Intron	SNP	T	TCGA-17-Z035-01A-01W-0746-08	208956	145205810	104044811	10	76558											
NBPF10	100132406	broad.mit.edu	37	chr1	145246574	145246574	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acctttagggacatttagttCgctctcagcttggtacaggt	10	9	1	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145246574	T	T	145246574	1	4	64	0	1	0	0	0	0	0	0	0	10287	899	31	4		4	NBPF10	1	145246574	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	40764	145246574	104004047	11	76559											
NBPF10	100132406	broad.mit.edu	37	chr1	146397560	146397560	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacgaagctgggccagggAaagggcagaaattgccatgg	16	7	0	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146397560	G	G	146397560	1	3	64	0	1	0	0	0	0	0	0	0	10287	261	9	5		5	NBPF10	1	146397560	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08	1150986	146397560	102853061	12	76560											
CD1A	909	broad.mit.edu	37	chr1	158225714	158225714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaccctgcacacttccccCttctgcttctataatctttg	3	16	3	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158225714	T	T	158225714	1	4	64	0	1	0	0	0	0	0	0	0	3004	696	24	4		4	CD1A	1	158225714	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	11828154	158225714	91024907	13	76561											
SLAMF1	6504	broad.mit.edu	37	chr1	160607946	160607946	+	Intron	DEL	A	-	-													gctgagccaacaacaaggttAaaaaaaaaaataccaagagc					rs11344567		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160607946	-	-	160607946	6	5	64	0	1	1	0	1	0	0	0	0	14480	377	13	0		0	SLAMF1	1	160607946	Intron	DEL	A	TCGA-17-Z035-01A-01W-0746-08	2382232	160607946	88642675	14	76562											
LY9	4063	broad.mit.edu	37	chr1	160783377	160783377	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttcttctctcagcgctttCctgctggcaaaaggatctga	8	13	4	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160783377	T	T	160783377	1	4	64	0	1	0	0	0	0	0	0	0	9189	870	30	4		4	LY9	1	160783377	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	175431	160783377	88467244	15	76563											
ASPM	259266	broad.mit.edu	37	chr1	197070923	197070923	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctgaaagtagcctgaatGagaactgcagccctttgcat	9	10	0	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197070923	A	A	197070923	2	1	64	1	0	0	0	0	0	0	0	1	1060	1277	45	4		4	ASPM	1	197070923	Silent	SNP	G	TCGA-17-Z035-01A-01W-0746-08	36287546	197070923	52179698	16	76564											
MOSC1	64757	broad.mit.edu	37	chr1	220986562	220986562	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcggaggccctgtgtgggAtggaagccacgtgctggttg	19	8	0	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220986562	T	T	220986562	1	4	64	0	1	0	0	0	0	0	0	0	9807	348	12	5		5	MOSC1	1	220986562	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08	23915639	220986562	28264059	17	76565											
RYR2	6262	broad.mit.edu	37	chr1	237730043	237730043	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggatcaggagcttggctcaGatgaacgtgcctttgccttt	12	10	2	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237730043	T	T	237730043	3	4	64	1	0	0	0	0	1	0	0	0	13880	942	33	3	3501	3	RYR2	1	237730043	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	16743481	237730043	11520578	18	76566											
RYR2	6262	broad.mit.edu	37	chr1	237947546	237947546	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatatttgacgtggtcaaCgaaggcggagagaaagagaa	13	5	2	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947546	T	T	237947546	2	4	64	1	0	0	0	0	0	0	0	1	13880	535	19	4		4	RYR2	1	237947546	Silent	SNP	C	TCGA-17-Z035-01A-01W-0746-08	217503	237947546	11303075	19	76567											
KHK	3795	broad.mit.edu	37	chr2	27319769	27319769	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcatgaagtaccttagagAtaaatgaacccaaccccctc	5	12	1	3	rs138109784	by1000genomes	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27319769	C	C	27319769	1	2	64	0	1	0	0	0	0	0	0	0	8219	348	12	5		5	KHK	2	27319769	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08		27319769	215879604	20	76568											
PLEK	5341	broad.mit.edu	37	chr2	68608069	68608069	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttacttctctttacccatTccttctgaaagacacaaaca	3	12	2	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68608069	C	C	68608069	1	2	64	0	1	0	0	0	0	0	0	0	12148	1798	62	5		5	PLEK	2	68608069	Intron	SNP	T	TCGA-17-Z035-01A-01W-0746-08	41288300	68608069	174591304	21	76569											
RGPD1	400966	broad.mit.edu	37	chr2	87211866	87211866	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttctttcttttctttttTttttttttagttgcaactac	3	6	3	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87211866	G	G	87211866	1	3	64	0	1	0	0	0	0	0	0	0	13393	1856	64	5		5	RGPD1	2	87211866	Intron	SNP	T	TCGA-17-Z035-01A-01W-0746-08	18603797	87211866	155987507	22	76570											
CNTNAP5	129684	broad.mit.edu	37	chr2	125464493	125464493	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagaaggaggaggaggagGagaagaagaagaagaagaag	19	0	0	8			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125464493	A	A	125464493	1	1	64	0	1	0	0	0	0	0	0	0	3682	1189	41	4		4	CNTNAP5	2	125464493	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	38252627	125464493	117734880	23	76571											
TTN	7273	broad.mit.edu	37	chr2	179547565	179547565	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcatattcttcttcccGttgtactgaaacagcttctt	4	12	4	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179547565	A	A	179547565	3	1	64	1	0	0	0	0	1	0	0	0	16861	1144	40	4	71488	4	TTN	2	179547565	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	54083072	179547565	63651808	24	76572											
KIAA1486	57624	broad.mit.edu	37	chr2	226378339	226378339	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcacctcatcagagacagtCagcagcactgcagccagtaa	9	13	3	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226378339	T	T	226378339	2	4	64	1	0	0	0	0	0	0	0	1	8307	813	29	4		4	KIAA1486	2	226378339	Silent	SNP	C	TCGA-17-Z035-01A-01W-0746-08	46830774	226378339	16821034	25	76573											
CACNA1D	776	broad.mit.edu	37	chr3	53837671	53837671	+	Intron	DEL	G	-	-													tcggcccactccggaagccaGggccaccggcagctgcactt							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53837671	-	-	53837671	6	5	64	0	1	1	0	1	0	0	0	0	2567	1015	35	0		0	CACNA1D	3	53837671	Intron	DEL	G	TCGA-17-Z035-01A-01W-0746-08		53837671	144184759	26	76574											
ALCAM	214	broad.mit.edu	37	chr3	105243204	105243204	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtgtgcagtacgacgaTgtaccagaatacaaagacag	10	7	0	2	rs150607806	byFrequency	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105243204	C	C	105243204	2	2	64	1	0	0	0	0	0	0	0	1	487	1461	51	5		5	ALCAM	3	105243204	Silent	SNP	T	TCGA-17-Z035-01A-01W-0746-08	51405533	105243204	92779226	27	76575											
KCNIP4	80333	broad.mit.edu	37	chr4	21779100	21779100	+	Intron	DEL	A	-	-													aatagaattaaaaatgggacAtttttataccagatgtaata					rs5856668		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21779100	-	-	21779100	6	5	64	0	1	1	0	1	0	0	0	0	8112	232	8	0		0	KCNIP4	4	21779100	Intron	DEL	A	TCGA-17-Z035-01A-01W-0746-08		21779100	169375176	28	76576											
GABRA2	2555	broad.mit.edu	37	chr4	46252257	46252257	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattagcagttattagtcaGactgtacatagcaaaacaaa	6	6	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46252257	C	C	46252257	1	2	64	0	1	0	0	0	0	0	0	0	6221	957	33	4		4	GABRA2	4	46252257	3'UTR	SNP	G	TCGA-17-Z035-01A-01W-0746-08	24473157	46252257	144902019	29	76577											
WDFY3	23001	broad.mit.edu	37	chr4	85639798	85639798	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgttagactactacggcaTccctagagctaagcatatta	7	9	0	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85639798	G	G	85639798	1	3	64	0	1	0	0	0	0	0	0	0	17397	1450	50	5		5	WDFY3	4	85639798	Intron	SNP	T	TCGA-17-Z035-01A-01W-0746-08	39387541	85639798	105514478	30	76578											
GRID2	2895	broad.mit.edu	37	chr4	94600895	94600895	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaacgagaacaaagacacAacataccagaatctctggga	7	11	1	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94600895	C	C	94600895	1	2	64	0	1	0	0	0	0	0	0	0	6838	145	5	5		5	GRID2	4	94600895	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08	8961097	94600895	96553381	31	76579											
ANK2	287	broad.mit.edu	37	chr4	114179205	114179205	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttgattgtcttttgcacaGaatggttttactccactgca	7	9	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114179205	C	C	114179205	5	2	64	1	0	0	0	0	0	0	1	0	621	956	33	4	1259	4	ANK2	4	114179205	Splice_Site	SNP	G	TCGA-17-Z035-01A-01W-0746-08	19578310	114179205	76975071	32	76580											
KIAA0947	23379	broad.mit.edu	37	chr5	5462469	5462474	+	In_Frame_Del	DEL	GTGACT	-	-													agatgcttccagccacagaaGtgactgtgtcaggagggttt							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5462474	-	-	5462469	7	5	64	1	0	1	0	1	0	0	0	0	8272	1029	36	0	3072	0	KIAA0947	5	5462469	In_Frame_Del	DEL	GTGACT	TCGA-17-Z035-01A-01W-0746-08		5462469	175452791	33	76581											
PRDM9	56979	broad.mit.edu	37	chr5	23521181	23521181	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctagtttgaaagaattgtCaagaacagcaaatttactga	7	5	2	4			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23521181	A	A	23521181	4	1	64	1	0	0	0	0	0	1	0	0	12569	838	29	3	419	3	PRDM9	5	23521181	Nonsense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	18058712	23521181	157394079	34	76582											
PRDM9	56979	broad.mit.edu	37	chr5	23524611	23524611	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcaagtggggcagcaagtgGaagaaagagctcatggcagg	16	6	2	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23524611	A	A	23524611	4	1	64	1	0	0	0	0	0	1	0	0	12569	1183	41	4	1153	4	PRDM9	5	23524611	Nonsense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	3430	23524611	157390649	35	76583											
ADAMTS12	81792	broad.mit.edu	37	chr5	33684038	33684038	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcatctttgtgtcggccaCcaccagtgtctccacccatc	6	16	3	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33684038	T	T	33684038	3	4	64	1	0	0	0	0	1	0	0	0	257	507	18	4	4111	4	ADAMTS12	5	33684038	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	10159427	33684038	147231222	36	76584											
CARD6	84674	broad.mit.edu	37	chr5	40852576	40852576	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccttgacgtgctttgtgCcaccatgctgtgttcagata	9	12	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40852576	T	T	40852576	3	4	64	1	0	0	0	0	1	0	0	0	2676	739	26	4	1152	4	CARD6	5	40852576	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	7168538	40852576	140062684	37	76585											
GRIA1	2890	broad.mit.edu	37	chr5	153190618	153190618	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccacagcaatccatcaacGaagccatacggacatcgacc	6	16	1	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153190618	T	T	153190618	4	4	64	1	0	0	0	0	0	1	0	0	6833	1059	37	3	2735	3	GRIA1	5	153190618	Nonsense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	112338042	153190618	27724642	38	76586											
ATP10B	23120	broad.mit.edu	37	chr5	160047777	160047777	+	Missense_Mutation	SNP	C	T	T													tccactgcacacagatgcatCatctctctcatccgagtctg							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160047777	T	T	160047777	3	4	64	1	0	0	0	0	1	0	0	0	1121	826	29	4	2440	4	ATP10B	5	160047777	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	6857159	160047777	20867483	39	76587	347	2									
ATP10B	23120	broad.mit.edu	37	chr5	160047784	160047784	+	Silent	SNP	C	T	T													cacacagatgcatcatctctCtcatccgagtctgtggtggc							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160047784	T	T	160047784	2	4	64	1	0	0	0	0	0	0	0	1	1121	912	32	4		4	ATP10B	5	160047784	Silent	SNP	C	TCGA-17-Z035-01A-01W-0746-08	7	160047784	20867476	40	76588	347	2									
EIF4E1B	253314	broad.mit.edu	37	chr5	176072396	176072396	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgctgtgtctgatcgggGagagctttgaggaacacagc	15	8	1	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176072396	T	T	176072396	4	4	64	1	0	0	0	0	0	1	0	0	5071	1175	41	3	515	3	EIF4E1B	5	176072396	Nonsense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	16024612	176072396	4842864	41	76589											
DOK3	79930	broad.mit.edu	37	chr5	176935091	176935091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattttctccatggcacgcaCggccctctgagagtcattat	8	13	3	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176935091	T	T	176935091	1	4	64	0	1	0	0	0	0	0	0	0	4738	551	19	4		4	DOK3	5	176935091	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	862695	176935091	3980169	42	76590											
ATXN1	6310	broad.mit.edu	37	chr6	16326626	16326626	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccctggctaacgttaccTgggctcggtgctccccgacg	11	17	0	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16326626	C	C	16326626	3	2	64	1	0	0	0	0	1	0	0	0	1213	1594	55	5	539	5	ATXN1	6	16326626	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08		16326626	154788441	43	76591											
ZNF165	7718	broad.mit.edu	37	chr6	28056794	28056794	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaaacttgctaaacatgCagcagttttcagtggagata	8	9	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28056794	T	T	28056794	3	4	64	1	0	0	0	0	1	0	0	0	17866	710	25	4	1014	4	ZNF165	6	28056794	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	11730168	28056794	143058273	44	76592											
C6orf138	442213	broad.mit.edu	37	chr6	47846567	47846567	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaaaagtcaggattaaCaccaggagaacaccaaagcc	9	9	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47846567	T	T	47846567	2	4	64	1	0	0	0	0	0	0	0	1	2355	465	17	4		4	C6orf138	6	47846567	Silent	SNP	C	TCGA-17-Z035-01A-01W-0746-08	19789773	47846567	123268500	45	76593											
PKHD1	5314	broad.mit.edu	37	chr6	51854745	51854745	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaggaaagaaggaaggaaGaaaggaaggaaagaaggaag	18	0	0	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51854745	T	T	51854745	1	4	64	0	1	0	0	0	0	0	0	0	12066	957	33	3		3	PKHD1	6	51854745	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	4008178	51854745	119260322	46	76594											
PAQR8	85315	broad.mit.edu	37	chr6	52269098	52269098	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcaagtggggcaacgtGtggaggaagcccctcataat	15	9	1	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52269098	A	A	52269098	1	1	64	0	1	0	0	0	0	0	0	0	11535	1392	48	4		4	PAQR8	6	52269098	3'UTR	SNP	G	TCGA-17-Z035-01A-01W-0746-08	414353	52269098	118845969	47	76595											
COL21A1	81578	broad.mit.edu	37	chr6	55924943	55924943	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtggcccaggaataccCggggagccatgttgggacag	16	11	0	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55924943	T	T	55924943	2	4	64	1	0	0	0	0	0	0	0	1	3712	639	23	4		4	COL21A1	6	55924943	Silent	SNP	C	TCGA-17-Z035-01A-01W-0746-08	3655845	55924943	115190124	48	76596											
KLHL32	114792	broad.mit.edu	37	chr6	97533208	97533208	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctccctgagtgaagagcaGatctggcaggtaagggcgct	14	10	1	4	rs142854913	byFrequency	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97533208	A	A	97533208	2	1	64	1	0	0	0	0	0	0	0	1	8457	933	33	4		4	KLHL32	6	97533208	Silent	SNP	G	TCGA-17-Z035-01A-01W-0746-08	41608265	97533208	73581859	49	76597											
ROS1	6098	broad.mit.edu	37	chr6	117679207	117679207	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaacacagccaagaagagAgtggttatttttttatttga	10	4	0	4			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117679207	T	T	117679207	1	4	64	0	1	0	0	0	0	0	0	0	13642	319	11	5		5	ROS1	6	117679207	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08	20145999	117679207	53435860	50	76598											
ECT2L	345930	broad.mit.edu	37	chr6	139203925	139203925	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctcactgtgtgggagaaAtagtcacgaagtttggaagc	13	7	2	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139203925	C	C	139203925	3	2	64	1	0	0	0	0	1	0	0	0	4942	101	4	5	1999	5	ECT2L	6	139203925	Missense_Mutation	SNP	A	TCGA-17-Z035-01A-01W-0746-08	21524718	139203925	31911142	51	76599											
PARK2	5071	broad.mit.edu	37	chr6	162189110	162189110	+	Intron	DEL	T	-	-													tcaaatctagtctaattaagTtttttttttttctgcagcgt					rs11366170		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	162189110	-	-	162189110	6	5	64	0	1	1	0	1	0	0	0	0	11543	1740	60	0		0	PARK2	6	162189110	Intron	DEL	T	TCGA-17-Z035-01A-01W-0746-08	22985185	162189110	8925957	52	76600											
EIF2AK1	27102	broad.mit.edu	37	chr7	6094284	6094284	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caactgcaaaagggaaggttGgctgttgtaggggttctttt	14	5	1	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6094284	A	A	6094284	3	1	64	1	0	0	0	0	1	0	0	0	5036	1348	47	4	1778	4	EIF2AK1	7	6094284	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08		6094284	153044379	53	76601											
DNAH11	8701	broad.mit.edu	37	chr7	21905998	21905998	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actatccagcacagttttttTacataagattagatacattc	4	8	0	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21905998	A	A	21905998	1	1	64	0	1	0	0	0	0	0	0	0	4639	1769	61	5		5	DNAH11	7	21905998	Intron	SNP	T	TCGA-17-Z035-01A-01W-0746-08	15811714	21905998	137232665	54	76602											
EGFR	1956	broad.mit.edu	37	chr7	55259524	55259524	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattttgggctggccaaacTgctgggtgcggaagagaaag	16	6	0	2	rs121913444		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259524	G	G	55259524	3	3	64	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2928	5	EGFR	7	55259524	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08	33353526	55259524	103879139	55	76603											
DMTF1	9988	broad.mit.edu	37	chr7	86822727	86822727	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatagaccaggattagttgaTaaggaccaaaatagaaggta	10	4	0	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86822727	A	A	86822727	1	1	64	0	1	0	0	0	0	0	0	0	4632	1421	49	5		5	DMTF1	7	86822727	Intron	SNP	T	TCGA-17-Z035-01A-01W-0746-08	31563203	86822727	72315936	56	76604											
ABCB4	5244	broad.mit.edu	37	chr7	87073039	87073039	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaactccaaattccctttGatgctgtctggtttgtgtcc	8	10	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87073039	C	C	87073039	3	2	64	1	0	0	0	0	1	0	0	0	43	1280	45	4	2762	4	ABCB4	7	87073039	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	250312	87073039	72065624	57	76605											
COL1A2	1278	broad.mit.edu	37	chr7	94040249	94040249	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgatggcagagctggcGtcatggtaagctgtctatca	14	8	3	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94040249	A	A	94040249	3	1	64	1	0	0	0	0	1	0	0	0	3710	1145	40	4	1332	4	COL1A2	7	94040249	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	6967210	94040249	65098414	58	76606											
TMEM176B	28959	broad.mit.edu	37	chr7	150491187	150491187	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaggatgagaaaccagaccCcttcccgtgagtccacatgc	9	14	0	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150491187	G	G	150491187	1	3	64	0	1	0	0	0	0	0	0	0	16216	638	22	4		4	TMEM176B	7	150491187	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	56450938	150491187	8647476	59	76607											
PXDNL	137902	broad.mit.edu	37	chr8	52366163	52366163	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgaccatgatcccgttgtgTgatgttctgtaagtaaagtc	10	8	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52366163	G	G	52366163	3	3	64	1	0	0	0	0	1	0	0	0	12956	1696	59	5	3282	5	PXDNL	8	52366163	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08		52366163	93997859	60	76608											
RUNX1T1	862	broad.mit.edu	37	chr8	93099625	93099626	+	Intron	INS	-	G	G													caccccaatactcctccaaaINSgtcttttccacatctaggct					rs142586565	by1000genomes	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93099626	G	G	93099625	6	5	64	0	1	1	1	0	0	0	0	0	13858	87	3	0		0	RUNX1T1	8	93099625	Intron	INS	-	TCGA-17-Z035-01A-01W-0746-08	40733462	93099625	53264397	61	76609											
MATN2	4147	broad.mit.edu	37	chr8	99019450	99019450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacgaggacctcaagacctGctcccgtgagtccctccgcg	10	17	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99019450	T	T	99019450	3	4	64	1	0	0	0	0	1	0	0	0	9426	1319	46	3	1475	3	MATN2	8	99019450	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	5919825	99019450	47344572	62	76610											
PHF20L1	51105	broad.mit.edu	37	chr8	133855031	133855048	+	In_Frame_Del	DEL	GTTAGTAGTTTGGAAGAA	-	-													ggagctcagatgatgatgatGttagtagtttggaagaagaa							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133855048	-	-	133855031	7	5	64	1	0	1	0	1	0	0	0	0	11927	1377	48	0	2825	0	PHF20L1	8	133855031	In_Frame_Del	DEL	GTTAGTAGTTTGGAAGAA	TCGA-17-Z035-01A-01W-0746-08	34835581	133855031	12508991	63	76611											
KIAA2026	158358	broad.mit.edu	37	chr9	5920905	5920905	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacttgatgagcaaagtctAtttgacaaaataggcataat	8	5	1	4			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5920905	G	G	5920905	2	3	64	1	0	0	0	0	0	0	0	1	8340	446	16	5		5	KIAA2026	9	5920905	Silent	SNP	A	TCGA-17-Z035-01A-01W-0746-08		5920905	135292526	64	76612											
GABBR2	9568	broad.mit.edu	37	chr9	101235628	101235628	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacatgttctcctcgtatgCctgtaaaagatggagtgact	9	8	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101235628	T	T	101235628	3	4	64	1	0	0	0	0	1	0	0	0	6216	753	26	4	2082	4	GABBR2	9	101235628	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	95314723	101235628	39977803	65	76613											
ZNF462	58499	broad.mit.edu	37	chr9	109688044	109688044	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actctgaaagggctaagagtCcatcagcagcataaacattc	8	10	2	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109688044	T	T	109688044	2	4	64	1	0	0	0	0	0	0	0	1	18053	842	30	4		4	ZNF462	9	109688044	Silent	SNP	C	TCGA-17-Z035-01A-01W-0746-08	8452416	109688044	31525387	66	76614											
ECHDC3	79746	broad.mit.edu	37	chr10	11791541	11791541	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgacttaaaggagctgacaGaggagcaaggccgtgattac	13	7	0	4			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11791541	T	T	11791541	4	4	64	1	0	0	0	0	0	1	0	0	4935	943	33	3	350	3	ECHDC3	10	11791541	Nonsense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08		11791541	123743206	67	76615											
ANXA8	653145	broad.mit.edu	37	chr10	47082674	47082674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgagttttcactcacaCcctggatgcccatctccttc	5	17	3	1	rs113148350	by1000genomes	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47082674	T	T	47082674	1	4	64	0	1	0	0	0	0	0	0	0	724	522	18	4		4	ANXA8	10	47082674	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	35291133	47082674	88452073	68	76616											
PANK1	53354	broad.mit.edu	37	chr10	91352984	91352984	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcacatccgagcaatggaGccaatgttgttggtgatggt	14	8	0	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91352984	A	A	91352984	2	1	64	1	0	0	0	0	0	0	0	1	11510	958	34	4		4	PANK1	10	91352984	Silent	SNP	G	TCGA-17-Z035-01A-01W-0746-08	44270310	91352984	44181763	69	76617											
HABP2	3026	broad.mit.edu	37	chr10	115334304	115334305	+	Intron	INS	-	T	T													aagaaattatttggactggcINSttttttttctgttagattca							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115334305	T	T	115334304	6	5	64	0	1	1	1	0	0	0	0	0	7004	812	28	0		0	HABP2	10	115334304	Intron	INS	-	TCGA-17-Z035-01A-01W-0746-08	23981320	115334304	20200443	70	76618											
SBF2	81846	broad.mit.edu	37	chr11	10197503	10197503	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaaataaagatgttctttGaaaccaacgagaacaaagac	7	7	1	5			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10197503	C	C	10197503	1	2	64	0	1	0	0	0	0	0	0	0	13971	1305	45	4		4	SBF2	11	10197503	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08		10197503	124809013	71	76619											
SPTBN2	6712	broad.mit.edu	37	chr11	66461838	66461838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcccattccagcatctgCaaaccgccaggaggaaggac	9	14	2	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66461838	A	A	66461838	1	1	64	0	1	0	0	0	0	0	0	0	15238	725	25	3		3	SPTBN2	11	66461838	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	56264335	66461838	68544678	72	76620											
RNF169	254225	broad.mit.edu	37	chr11	74546742	74546742	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccctgcataagccagagcGttctgtcagccctgagagca	10	13	2	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74546742	A	A	74546742	3	1	64	1	0	0	0	0	1	0	0	0	13571	1145	40	4	1116	4	RNF169	11	74546742	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	8084904	74546742	60459774	73	76621											
DLG2	1740	broad.mit.edu	37	chr11	83302830	83302830	+	Intron	DEL	A	-	-													ttaagctggtaagcaacttcAgcaaagtctcaggatacaaa							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83302830	-	-	83302830	6	5	64	0	1	1	0	1	0	0	0	0	4595	203	7	0		0	DLG2	11	83302830	Intron	DEL	A	TCGA-17-Z035-01A-01W-0746-08	8756088	83302830	51703686	74	76622											
CWF19L2	143884	broad.mit.edu	37	chr11	107274471	107274471	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctttcctcctgctttttgCcggtctgttcctctgcctgt	7	16	2	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107274471	T	T	107274471	1	4	64	0	1	0	0	0	0	0	0	0	4105	754	26	4		4	CWF19L2	11	107274471	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	23971641	107274471	27732045	75	76623											
NPAT	4863	broad.mit.edu	37	chr11	108044206	108044206	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggtatatcaggctgatcaGgctgtaactgagattcactc	10	8	3	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108044206	C	C	108044206	3	2	64	1	0	0	0	0	1	0	0	0	10661	1000	35	4	2802	4	NPAT	11	108044206	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	769735	108044206	26962310	76	76624											
C11orf52	91894	broad.mit.edu	37	chr11	111795048	111795048	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatctgtttttcctattacAggagctgcccatcaactttc	6	11	2	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111795048	G	G	111795048	5	3	64	1	0	0	0	0	0	0	1	0	1659	202	7	5	37	5	C11orf52	11	111795048	Splice_Site	SNP	A	TCGA-17-Z035-01A-01W-0746-08	3750842	111795048	23211468	77	76625											
ZBTB16	7704	broad.mit.edu	37	chr11	114013485	114013485	+	Intron	DEL	G	-	-													ggagcatggggccttggggaGggggagctggggggattgtg							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114013485	-	-	114013485	6	5	64	0	1	1	0	1	0	0	0	0	17652	1015	35	0		0	ZBTB16	11	114013485	Intron	DEL	G	TCGA-17-Z035-01A-01W-0746-08	2218437	114013485	20993031	78	76626											
CHD4	1108	broad.mit.edu	37	chr12	6701270	6701270	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagacttgagagcctttcaAtgactaataatgcagtgcca	8	8	1	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6701270	G	G	6701270	1	3	64	0	1	0	0	0	0	0	0	0	3358	116	4	5		5	CHD4	12	6701270	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08		6701270	127150625	79	76627											
DENND5B	160518	broad.mit.edu	37	chr12	31579340	31579340	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggttttttcctaaacttcGtgcctcttgcatatatttct	5	10	2	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31579340	A	A	31579340	4	1	64	1	0	0	0	0	0	1	0	0	4477	1153	40	4	1751	4	DENND5B	12	31579340	Nonsense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	24878070	31579340	102272555	80	76628											
ADAMTS20	80070	broad.mit.edu	37	chr12	43837404	43837404	+	Intron	DEL	T	-	-													ttgttcagaatttcattaagTtttttttttttaagtaatac							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43837404	-	-	43837404	6	5	64	0	1	1	0	1	0	0	0	0	266	1740	60	0		0	ADAMTS20	12	43837404	Intron	DEL	T	TCGA-17-Z035-01A-01W-0746-08	12258064	43837404	90014491	81	76629											
MLL2	8085	broad.mit.edu	37	chr12	49446558	49446559	+	Intron	INS	-	G	G													caaatcctagagagcacactINSggggggaggcacgaatgctg							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49446559	G	G	49446558	6	5	64	0	1	1	1	0	0	0	0	0	9714	1595	55	0		0	MLL2	12	49446558	Intron	INS	-	TCGA-17-Z035-01A-01W-0746-08	5609154	49446558	84405337	82	76630											
KRT85	3891	broad.mit.edu	37	chr12	52758819	52758819	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccgctgtcggcctccaCgcactcggcctcccgccgca	9	23	0	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52758819	T	T	52758819	3	4	64	1	0	0	0	0	1	0	0	0	8570	536	19	4	999	4	KRT85	12	52758819	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	3312261	52758819	81093076	83	76631											
CNOT2	4848	broad.mit.edu	37	chr12	70732672	70732672	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagtttttaatatcatgtCatcaaattatctcacctact	2	10	4	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70732672	G	G	70732672	1	3	64	0	1	0	0	0	0	0	0	0	3651	841	29	4		4	CNOT2	12	70732672	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	17973853	70732672	63119223	84	76632											
POC1B	282809	broad.mit.edu	37	chr12	89890841	89890841	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcagcatgccttttatgtGactgagaataacagtgcagg	13	7	0	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89890841	A	A	89890841	1	1	64	0	1	0	0	0	0	0	0	0	12271	1305	45	4		4	POC1B	12	89890841	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	19158169	89890841	43961054	85	76633											
HAL	3034	broad.mit.edu	37	chr12	96374754	96374754	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgtacaaatgtggggtGgagggaaagagacaagtctt	15	4	2	1	rs151224680	by1000genomes	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96374754	A	A	96374754	1	1	64	0	1	0	0	0	0	0	0	0	7013	1363	47	4		4	HAL	12	96374754	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	6483913	96374754	37477141	86	76634											
EP400	57634	broad.mit.edu	37	chr12	132554025	132554025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctgcggccctaatttcGcagtctctccccagatcacc	7	17	3	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132554025	T	T	132554025	1	4	64	0	1	0	0	0	0	0	0	0	5191	1102	38	3		3	EP400	12	132554025	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	36179271	132554025	1297870	87	76635											
SPATA13	221178	broad.mit.edu	37	chr13	24696580	24696580	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcttcttaccagtcttcatCgtctccatcttcaccagcct	3	16	7	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24696580	T	T	24696580	1	4	64	0	1	0	0	0	0	0	0	0	15116	899	31	4		4	SPATA13	13	24696580	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08		24696580	90473298	88	76636											
DCLK1	9201	broad.mit.edu	37	chr13	36396979	36396979	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctctctcggtgtatttgtTagtggaagtaatggcatcaa	11	6	3	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36396979	C	C	36396979	3	2	64	1	0	0	0	0	1	0	0	0	4324	1754	61	5	780	5	DCLK1	13	36396979	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08	11700399	36396979	78772899	89	76637											
RB1	5925	broad.mit.edu	37	chr13	48892643	48892643	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccctggccctgcgtcatgCgagtgtcgccgggccccttg	13	16	1	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48892643	T	T	48892643	1	4	64	0	1	0	0	0	0	0	0	0	13206	783	27	4		4	RB1	13	48892643	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	12495664	48892643	66277235	90	76638											
NEK5	341676	broad.mit.edu	37	chr13	52676357	52676357	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatggagctcacgagaaaaCcccggagatattggggcaaa	13	8	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52676357	G	G	52676357	2	3	64	1	0	0	0	0	0	0	0	1	10422	494	18	4		4	NEK5	13	52676357	Silent	SNP	C	TCGA-17-Z035-01A-01W-0746-08	3783714	52676357	62493521	91	76639											
GZMB	3002	broad.mit.edu	37	chr14	25100277	25100277	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttagtttgcttcctgtagTtagtagcgtttcatggtttt	10	6	1	0	rs148812799		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25100277	C	C	25100277	2	2	64	1	0	0	0	0	0	0	0	1	6981	1732	60	5		5	GZMB	14	25100277	Silent	SNP	T	TCGA-17-Z035-01A-01W-0746-08		25100277	82249263	92	76640											
C14orf156	81892	broad.mit.edu	37	chr14	78183397	78183397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattacaggcgtgagccacAgcgcctggccagcagtctgc	14	13	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78183397	T	T	78183397	1	4	64	0	1	0	0	0	0	0	0	0	1767	203	7	5		5	C14orf156	14	78183397	Intron	SNP	A	TCGA-17-Z035-01A-01W-0746-08	53083120	78183397	29166143	93	76641											
IL16	3603	broad.mit.edu	37	chr15	81591732	81591732	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgtagtgacccaaacaTccccgataaaacacccactg	6	15	0	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81591732	G	G	81591732	3	3	64	1	0	0	0	0	1	0	0	0	7703	1435	50	5	2115	5	IL16	15	81591732	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08		81591732	20939660	94	76642											
ITGAL	3683	broad.mit.edu	37	chr16	30515576	30515576	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagggacaccgagggaCcaaagggcggtaagaagaga	18	6	0	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30515576	G	G	30515576	3	3	64	1	0	0	0	0	1	0	0	0	7956	506	18	4	2296	4	ITGAL	16	30515576	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08		30515576	59839177	95	76643											
SLC9A5	6553	broad.mit.edu	37	chr16	67304767	67304767	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcggaaaccaccaagaTtgtgcctgtggacatgcaga	11	11	0	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67304767	C	C	67304767	3	2	64	1	0	0	0	0	1	0	0	0	14831	1493	52	5	2407	5	SLC9A5	16	67304767	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08	36789191	67304767	23049986	96	76644											
PMFBP1	83449	broad.mit.edu	37	chr16	72174174	72174175	+	Intron	INS	-	G	G													tggagaatatgaacaaagttINSggggggcaagtatatatcag							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72174175	G	G	72174174	6	5	64	0	1	1	1	0	0	0	0	0	12229	1827	63	0		0	PMFBP1	16	72174174	Intron	INS	-	TCGA-17-Z035-01A-01W-0746-08	4869407	72174174	18180579	97	76645											
TP53	7157	broad.mit.edu	37	chr17	7578400	7578400	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcagcgctcatggtggGggcagcgcctcacaacctcc	13	15	2	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578400	C	C	7578400	3	2	64	1	0	0	0	0	1	0	0	0	16505	1232	43	4	768	4	TP53	17	7578400	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08		7578400	73616810	98	76646											
CCDC55	84081	broad.mit.edu	37	chr17	28512801	28512801	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtagtttggagggcattttTaaatttattttcaaaatttt	7	2	1	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28512801	A	A	28512801	1	1	64	0	1	0	0	0	0	0	0	0	2853	1769	61	5		5	CCDC55	17	28512801	3'UTR	SNP	T	TCGA-17-Z035-01A-01W-0746-08	20934401	28512801	52682409	99	76647											
HEATR6	63897	broad.mit.edu	37	chr17	58147229	58147230	+	Intron	DEL	AC	-	-													tctaataatgatgaataaggAcacacacacacacacgaaac							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58147230	-	-	58147229	6	5	64	0	1	1	0	1	0	0	0	0	7100	290	10	0		0	HEATR6	17	58147229	Intron	DEL	AC	TCGA-17-Z035-01A-01W-0746-08	29634428	58147229	23047981	100	76648											
SDK2	54549	broad.mit.edu	37	chr17	71354414	71354414	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagcccgtcaccctgggctCgaggaggaacactgggtgac	14	14	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71354414	T	T	71354414	1	4	64	0	1	0	0	0	0	0	0	0	14082	899	31	4		4	SDK2	17	71354414	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	13207185	71354414	9840796	101	76649											
FAM38B	63895	broad.mit.edu	37	chr18	10689470	10689470	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacatctggatgctattgaCgactatgacggcagtaagtc	10	8	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10689470	T	T	10689470	1	4	64	0	1	0	0	0	0	0	0	0	5606	551	19	4		4	FAM38B	18	10689470	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08		10689470	67387778	102	76650											
MAPRE2	10982	broad.mit.edu	37	chr18	32605521	32605521	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcgtggctgaatgttcCcaactctatgtgctcttcac	8	12	3	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32605521	A	A	32605521	1	1	64	0	1	0	0	0	0	0	0	0	9387	638	22	2		2	MAPRE2	18	32605521	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	21916051	32605521	45471727	103	76651											
CASP14	23581	broad.mit.edu	37	chr19	15166224	15166224	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaagctcccccgaacccacCtctctggaattcccaggata	7	16	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15166224	G	G	15166224	1	3	64	0	1	0	0	0	0	0	0	0	2696	696	24	4		4	CASP14	19	15166224	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08		15166224	43962759	104	76652											
ZNF93	81931	broad.mit.edu	37	chr19	20026321	20026321	+	Intron	DEL	G	-	-													ctttgcataaaggagtttcaGatccattttttccagaaaat							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20026321	-	-	20026321	6	5	64	0	1	1	0	1	0	0	0	0	18331	957	33	0		0	ZNF93	19	20026321	Intron	DEL	G	TCGA-17-Z035-01A-01W-0746-08	4860097	20026321	39102662	105	76653											
ZNF208	7757	broad.mit.edu	37	chr19	22156286	22156286	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttctctccagtatgaattCtcttatgttccataaggttt	6	8	2	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22156286	T	T	22156286	1	4	64	0	1	0	0	0	0	0	0	0	17892	913	32	4		4	ZNF208	19	22156286	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	2129965	22156286	36972697	106	76654											
ZNF98	148198	broad.mit.edu	37	chr19	22574640	22574640	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttaaaagctttgccacatTcttcacatttgtagggtttc	8	8	2	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22574640	A	A	22574640	3	1	64	1	0	0	0	0	1	0	0	0	18332	1783	62	5	325	5	ZNF98	19	22574640	Missense_Mutation	SNP	T	TCGA-17-Z035-01A-01W-0746-08	418354	22574640	36554343	107	76655											
CYP2A7	1549	broad.mit.edu	37	chr19	41533151	41533151	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgaatggtgaacacggGgccatagcgctcactgatct	13	10	2	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41533151	A	A	41533151	1	1	64	0	1	0	0	0	0	0	0	0	4196	1247	43	4		4	CYP2A7	19	41533151	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	18958511	41533151	17595832	108	76656											
KLK8	11202	broad.mit.edu	37	chr19	51501191	51501191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagcagccctttgcctcCatccctgtctggatctaacc	8	15	2	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51501191	A	A	51501191	1	1	64	0	1	0	0	0	0	0	0	0	8481	609	21	2		2	KLK8	19	51501191	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08	9968040	51501191	7627792	109	76657											
ISM1	140862	broad.mit.edu	37	chr20	13238738	13238740	+	Intron	DEL	GCT	-	-													ctggaacgggtggtattataGctgctatttctcccaagcat							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13238740	-	-	13238738	6	5	64	0	1	1	0	1	0	0	0	0	7930	986	34	0		0	ISM1	20	13238738	Intron	DEL	GCT	TCGA-17-Z035-01A-01W-0746-08		13238738	49786782	110	76658											
CTSA	5476	broad.mit.edu	37	chr20	44525548	44525548	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagagaaggtctgatctgttGactacttttcgccccgacct	10	11	2	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44525548	T	T	44525548	1	4	64	0	1	0	0	0	0	0	0	0	4063	1305	45	3		3	CTSA	20	44525548	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	31286810	44525548	18499972	111	76659											
MORC3	23515	broad.mit.edu	37	chr21	37709283	37709283	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaatggtatgacttctgAtaaattacataaaatgctaa	8	4	1	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37709283	G	G	37709283	3	3	64	1	0	0	0	0	1	0	0	0	9797	333	12	5	234	5	MORC3	21	37709283	Missense_Mutation	SNP	A	TCGA-17-Z035-01A-01W-0746-08		37709283	10420612	112	76660											
DYRK1A	1859	broad.mit.edu	37	chr21	38877681	38877681	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggggagtcaggtcatacGgtcgctgactacttgaagtt	14	8	2	2			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38877681	A	A	38877681	2	1	64	1	0	0	0	0	0	0	0	1	4894	1103	39	4		4	DYRK1A	21	38877681	Silent	SNP	G	TCGA-17-Z035-01A-01W-0746-08	1168398	38877681	9252214	113	76661											
DEPDC5	9681	broad.mit.edu	37	chr22	32229787	32229787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatactcagcacagaatttgCacttggtttacatttttatt	5	7	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32229787	A	A	32229787	1	1	64	0	1	0	0	0	0	0	0	0	4482	725	25	3		3	DEPDC5	22	32229787	Intron	SNP	C	TCGA-17-Z035-01A-01W-0746-08		32229787	19074779	114	76662											
EFCAB6	64800	broad.mit.edu	37	chr22	44131803	44131803	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccttcttagctcctgcggtCgaaccagtccagtcttgtta	8	14	2	0	rs146629974	byFrequency;by1000genomes	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44131803	T	T	44131803	3	4	64	1	0	0	0	0	1	0	0	0	4979	884	31	4	4031	4	EFCAB6	22	44131803	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	11902016	44131803	7172763	115	76663											
ARHGAP6	395	broad.mit.edu	37	chrX	11206878	11206878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgaggagccggttccggGgtgtttggggacgttgactc	18	10	0	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11206878	T	T	11206878	2	4	64	1	0	0	0	0	0	0	0	1	889	1219	43	2		2	ARHGAP6	23	11206878	Silent	SNP	G	TCGA-17-Z035-01A-01W-0746-08		11206878	144063682	116	76664											
BMX	660	broad.mit.edu	37	chrX	15544346	15544346	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttacatgggtaaactcacGtaatgttctgggtcatttat	8	6	3	0			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15544346	A	A	15544346	1	1	64	0	1	0	0	0	0	0	0	0	1479	1160	40	4		4	BMX	23	15544346	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	4337468	15544346	139726214	117	76665											
GPR64	10149	broad.mit.edu	37	chrX	19017411	19017412	+	Intron	INS	-	G	G													cagcagctggagtttgtggaINSgggggggaaacaggggaaaa					rs142903941	by1000genomes	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19017412	G	G	19017411	6	5	64	0	1	1	1	0	0	0	0	0	6770	319	11	0		0	GPR64	23	19017411	Intron	INS	-	TCGA-17-Z035-01A-01W-0746-08	3473065	19017411	136253149	118	76666											
CNKSR2	22866	broad.mit.edu	37	chrX	21613296	21613296	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttttgtgggcagaaaattGaactttttactgatttctgt	9	4	1	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21613296	A	A	21613296	1	1	64	0	1	0	0	0	0	0	0	0	3639	1305	45	4		4	CNKSR2	23	21613296	Intron	SNP	G	TCGA-17-Z035-01A-01W-0746-08	2595885	21613296	133657264	119	76667											
CNKSR2	22866	broad.mit.edu	37	chrX	21613488	21613488	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaagcttttattttgctGctgaacatcttgatgatatg	7	6	2	3			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21613488	A	A	21613488	3	1	64	1	0	0	0	0	1	0	0	0	3639	1319	46	4	2017	4	CNKSR2	23	21613488	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	192	21613488	133657072	120	76668											
FAM47A	158724	broad.mit.edu	37	chrX	34150189	34150189	+	Silent	SNP	G	A	A													aactcgtcacggcgacaaacGagagtatcttcgggagacgg							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34150189	A	A	34150189	2	1	64	1	0	0	0	0	0	0	0	1	5620	1045	37	4		4	FAM47A	23	34150189	Silent	SNP	G	TCGA-17-Z035-01A-01W-0746-08	12536701	34150189	121120371	121	76669	348	2									
FAM47A	158724	broad.mit.edu	37	chrX	34150191	34150191	+	Missense_Mutation	SNP	G	C	C													ctcgtcacggcgacaaacgaGagtatcttcgggagacggac							TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34150191	C	C	34150191	3	2	64	1	0	0	0	0	1	0	0	0	5620	942	33	4	2174	4	FAM47A	23	34150191	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	2	34150191	121120369	122	76670	348	2									
BMP15	9210	broad.mit.edu	37	chrX	50659489	50659489	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaccagagtgtcccccGgccctcctgtgtcccgtata	12	15	0	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50659489	A	A	50659489	3	1	64	1	0	0	0	0	1	0	0	0	1464	1116	39	4	1067	4	BMP15	23	50659489	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	16509298	50659489	104611071	123	76671											
AR	367	broad.mit.edu	37	chrX	66863125	66863125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccagggaccatgttttGcccattgactattactttcc	7	12	0	1	rs139524801	byFrequency	TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66863125	T	T	66863125	3	4	64	1	0	0	0	0	1	0	0	0	838	1310	46	3	1674	3	AR	23	66863125	Missense_Mutation	SNP	G	TCGA-17-Z035-01A-01W-0746-08	16203636	66863125	88407435	124	76672											
HS6ST2	90161	broad.mit.edu	37	chrX	132091282	132091282	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcacacgtattggaggacGatcacggcaaataggaagag	15	7	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132091282	A	A	132091282	2	1	64	1	0	0	0	0	0	0	0	1	7438	1048	37	4		4	HS6ST2	23	132091282	Silent	SNP	G	TCGA-17-Z035-01A-01W-0746-08	65228157	132091282	23179278	125	76673											
MAGEC2	51438	broad.mit.edu	37	chrX	141291764	141291764	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggaatggaacgcctggaaCgggaggcatgacgacttctt	15	9	1	1			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291764	T	T	141291764	3	4	64	1	0	0	0	0	1	0	0	0	9273	536	19	4	1115	4	MAGEC2	23	141291764	Missense_Mutation	SNP	C	TCGA-17-Z035-01A-01W-0746-08	9200482	141291764	13978796	126	76674											
CROCC	9696	broad.mit.edu	37	chr1	17197882	17197882	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cataaagcttctctgcaaccGaaagaggcctgaagctccag	9	12	1	2	rs142070846	by1000genomes	TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17197882	T	T	17197882	1	4	65	0	1	0	0	0	0	0	0	0	3925	1073	37	3		3	CROCC	1	17197882	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08		17197882	232052739	1	76675											
HDAC1	3065	broad.mit.edu	37	chr1	32793141	32793141	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccttctgatcctaggtatCaccagagggtgctgtacatt	9	12	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32793141	T	T	32793141	3	4	65	1	0	0	0	0	1	0	0	0	7071	826	29	4	521	4	HDAC1	1	32793141	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	15595259	32793141	216457480	2	76676											
DMAP1	55929	broad.mit.edu	37	chr1	44684806	44684806	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgggagaaacgcagccagGacctgcagaagctgatcaca	13	11	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44684806	A	A	44684806	3	1	65	1	0	0	0	0	1	0	0	0	4616	1174	41	4	821	4	DMAP1	1	44684806	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	11891665	44684806	204565815	3	76677											
KANK4	163782	broad.mit.edu	37	chr1	62739507	62739507	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatcacacgactccctggtCaagagtccatggacagggtc	10	12	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739507	T	T	62739507	2	4	65	1	0	0	0	0	0	0	0	1	8049	825	29	4		4	KANK4	1	62739507	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	18054701	62739507	186511114	4	76678											
ROR1	4919	broad.mit.edu	37	chr1	64594589	64594589	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttttacttagcatgacaaGggaagcctttaggaagattg	11	5	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64594589	A	A	64594589	1	1	65	0	1	0	0	0	0	0	0	0	13637	1015	35	4		4	ROR1	1	64594589	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	1855082	64594589	184656032	5	76679											
MCOLN2	255231	broad.mit.edu	37	chr1	85396997	85396997	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtattttcctataatctatAtagaatttgcagtgattttt	6	4	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85396997	G	G	85396997	1	3	65	0	1	0	0	0	0	0	0	0	9489	464	16	5		5	MCOLN2	1	85396997	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	20802408	85396997	163853624	6	76680											
DPYD	1806	broad.mit.edu	37	chr1	98015052	98015052	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgctcttatagatgagtatCaaaaataaatgaagcactta	6	5	2	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98015052	A	A	98015052	1	1	65	0	1	0	0	0	0	0	0	0	4785	841	29	3		3	DPYD	1	98015052	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	12618055	98015052	151235569	7	76681											
MAGI3	260425	broad.mit.edu	37	chr1	113993352	113993352	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggatatggtagcagaaggttCgaaaaacagcagaaaagggc	14	5	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113993352	T	T	113993352	1	4	65	0	1	0	0	0	0	0	0	0	9284	899	31	4		4	MAGI3	1	113993352	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	15978300	113993352	135257269	8	76682											
C1orf161	126868	broad.mit.edu	37	chr1	116660179	116660179	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcacctcaactcttacctTtggagggctaagaggtggtg	12	9	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116660179	G	G	116660179	1	3	65	0	1	0	0	0	0	0	0	0	2029	1856	64	5		5	C1orf161	1	116660179	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	2666827	116660179	132590442	9	76683											
TRIM45	80263	broad.mit.edu	37	chr1	117654991	117654991	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacctgtccatgtgcattcaGatttctcattaaattttcca	4	11	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117654991	T	T	117654991	3	4	65	1	0	0	0	0	1	0	0	0	16645	942	33	3	67	3	TRIM45	1	117654991	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	994812	117654991	131595630	10	76684											
NBPF9	400818	broad.mit.edu	37	chr1	145189893	145189893	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcccatgtcagtaagcacAtggacattcatcaaagtcca	6	11	3	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145189893	G	G	145189893	1	3	65	0	1	0	0	0	0	0	0	0	10294	232	8	5		5	NBPF9	1	145189893	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	27534902	145189893	104060728	11	76685											
GJA8	2703	broad.mit.edu	37	chr1	147380358	147380358	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaccccgtccctgatgtaCgtggggcacgcggtgcacta	12	15	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147380358	G	G	147380358	4	3	65	1	0	0	0	0	0	1	0	0	6469	547	19	4	278	4	GJA8	1	147380358	Nonsense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2190465	147380358	101870263	12	76686											
LCE3D	84648	broad.mit.edu	37	chr1	152551921	152551921	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcactgccaatccttcaCaggtacaggggtaagggaac	11	11	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152551921	A	A	152551921	1	1	65	0	1	0	0	0	0	0	0	0	8744	493	17	3		3	LCE3D	1	152551921	3'UTR	SNP	C	TCGA-17-Z036-01A-01W-0746-08	5171563	152551921	96698700	13	76687											
FCRL2	79368	broad.mit.edu	37	chr1	157736756	157736756	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggtctcttctatagccatCaggtcctgaggaaagaaagc	11	9	3	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157736756	T	T	157736756	3	4	65	1	0	0	0	0	1	0	0	0	5852	826	29	4	382	4	FCRL2	1	157736756	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	5184835	157736756	91513865	14	76688											
CADM3	57863	broad.mit.edu	37	chr1	159159558	159159558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatggagattctctcccCaggctactggcaggagcagg	13	11	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159159558	A	A	159159558	1	1	65	0	1	0	0	0	0	0	0	0	2594	609	21	2		2	CADM3	1	159159558	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	1422802	159159558	90091063	15	76689											
DDR2	4921	broad.mit.edu	37	chr1	162619265	162619265	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgatcttgggtaagtcattGaatgtctctgagcctcagtt	11	7	4	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162619265	C	C	162619265	1	2	65	0	1	0	0	0	0	0	0	0	4370	1305	45	4		4	DDR2	1	162619265	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	3459707	162619265	86631356	16	76690											
DCAF6	55827	broad.mit.edu	37	chr1	167973205	167973205	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgcacaaagcaatagaggAcgaggaagatctcgacccag	12	9	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167973205	T	T	167973205	2	4	65	1	0	0	0	0	0	0	0	1	4307	262	10	5		5	DCAF6	1	167973205	Silent	SNP	A	TCGA-17-Z036-01A-01W-0746-08	5353940	167973205	81277416	17	76691											
PAPPA2	60676	broad.mit.edu	37	chr1	176763931	176763931	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggcatgctggatgtgagaGatgtaagggtttgaagtttt	16	2	0	3	rs147718722	by1000genomes	TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176763931	T	T	176763931	1	4	65	0	1	0	0	0	0	0	0	0	11527	957	33	3		3	PAPPA2	1	176763931	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	8790726	176763931	72486690	18	76692											
CACNA1S	779	broad.mit.edu	37	chr1	201020362	201020362	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcagggtgtggacagaTgagcaaactggggctgttgt	18	6	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201020362	A	A	201020362	1	1	65	0	1	0	0	0	0	0	0	0	2573	1479	51	5		5	CACNA1S	1	201020362	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	24256431	201020362	48230259	19	76693											
IGFN1	91156	broad.mit.edu	37	chr1	201197474	201197474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatgcagggtggggtggCtgcccctctgaaccaactgg	15	11	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201197474	A	A	201197474	1	1	65	0	1	0	0	0	0	0	0	0	7660	812	28	3		3	IGFN1	1	201197474	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	177112	201197474	48053147	20	76694											
PPP1R12B	4660	broad.mit.edu	37	chr1	202407851	202407851	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccaggtggttaccgtgcAttttgcagacgtcgtgagag	16	8	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202407851	G	G	202407851	1	3	65	0	1	0	0	0	0	0	0	0	12456	232	8	5		5	PPP1R12B	1	202407851	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	1210377	202407851	46842770	21	76695											
CD46	4179	broad.mit.edu	37	chr1	207946168	207946168	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtattttgttgaggattttTgcatcgatgttcatcaggga	11	4	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207946168	G	G	207946168	1	3	65	0	1	0	0	0	0	0	0	0	3048	1827	63	5		5	CD46	1	207946168	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	5538317	207946168	41304453	22	76696											
LPGAT1	9926	broad.mit.edu	37	chr1	212002507	212002507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccagcactcgaaggggCtgaagtataattacatagca	10	9	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212002507	A	A	212002507	3	1	65	1	0	0	0	0	1	0	0	0	9001	796	28	3	1008	3	LPGAT1	1	212002507	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	4056339	212002507	37248114	23	76697											
TP53BP2	7159	broad.mit.edu	37	chr1	223998127	223998127	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtatggataaaaacaacaActtacaccgttctcctttct	4	11	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223998127	G	G	223998127	1	3	65	0	1	0	0	0	0	0	0	0	16508	58	2	5		5	TP53BP2	1	223998127	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	11995620	223998127	25252494	24	76698											
EPHX1	2052	broad.mit.edu	37	chr1	226027757	226027757	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtgagtgtgctcaggggtCctcgcccactgccggctcca	14	14	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226027757	T	T	226027757	1	4	65	0	1	0	0	0	0	0	0	0	5221	870	30	4		4	EPHX1	1	226027757	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2029630	226027757	23222864	25	76699											
PLD5	200150	broad.mit.edu	37	chr1	242319856	242319856	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaggcaggcctggtggtgaTaaaatctctcagcatttgct	11	8	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242319856	C	C	242319856	1	2	65	0	1	0	0	0	0	0	0	0	12144	1421	49	5		5	PLD5	1	242319856	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	16292099	242319856	6930765	26	76700											
OR2M3	127062	broad.mit.edu	37	chr1	248367126	248367126	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtgggaatgtactatGgagcagctttgttcatgtac	14	5	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248367126	A	A	248367126	3	1	65	1	0	0	0	0	1	0	0	0	11105	1349	47	4	759	4	OR2M3	1	248367126	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	6047270	248367126	883495	27	76701											
ALK	238	broad.mit.edu	37	chr2	29541192	29541192	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacatggagagctcttgatcGgtgcaggaaacgtagcactg	13	9	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29541192	C	C	29541192	3	2	65	1	0	0	0	0	1	0	0	0	525	1116	39	4	3325	4	ALK	2	29541192	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08		29541192	213658181	28	76702											
SOS1	6654	broad.mit.edu	37	chr2	39214707	39214707	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcagtgcctttggttaaActtatagatgatacagaagc	8	7	2	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39214707	G	G	39214707	2	3	65	1	0	0	0	0	0	0	0	1	15050	40	2	5		5	SOS1	2	39214707	Silent	SNP	A	TCGA-17-Z036-01A-01W-0746-08	9673515	39214707	203984666	29	76703											
PLEKHH2	130271	broad.mit.edu	37	chr2	43984326	43984326	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttaccaatcagtgcaaagtGaatcaaactctaaagcaagt	7	8	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43984326	A	A	43984326	2	1	65	1	0	0	0	0	0	0	0	1	12172	1277	45	4		4	PLEKHH2	2	43984326	Silent	SNP	G	TCGA-17-Z036-01A-01W-0746-08	4769619	43984326	199215047	30	76704											
FSHR	2492	broad.mit.edu	37	chr2	49197174	49197174	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatatacttgagtaagaagAgtcttttaatgttggcattc	10	4	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49197174	T	T	49197174	1	4	65	0	1	0	0	0	0	0	0	0	6133	319	11	5		5	FSHR	2	49197174	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	5212848	49197174	194002199	31	76705											
LRRTM1	347730	broad.mit.edu	37	chr2	80529445	80529445	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcgttgatgatcaccagGgctccctcaatgtggttcgg	11	11	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80529445	T	T	80529445	2	4	65	1	0	0	0	0	0	0	0	1	9126	1219	43	2		2	LRRTM1	2	80529445	Silent	SNP	G	TCGA-17-Z036-01A-01W-0746-08	31332271	80529445	162669928	32	76706											
CTNNA2	1496	broad.mit.edu	37	chr2	80600419	80600419	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatttcttcactccctttaGtcaacatgtaggttgttttc	6	9	3	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80600419	A	A	80600419	1	1	65	0	1	0	0	0	0	0	0	0	4047	1044	36	4		4	CTNNA2	2	80600419	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	70974	80600419	162598954	33	76707											
CNGA3	1261	broad.mit.edu	37	chr2	98999936	98999936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacccagcagagccctccCcaagcccggtgccctccacc	7	23	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98999936	A	A	98999936	1	1	65	0	1	0	0	0	0	0	0	0	3630	638	22	2		2	CNGA3	2	98999936	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	18399517	98999936	144199437	34	76708											
ACTR3	10096	broad.mit.edu	37	chr2	114691790	114691790	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactagttttttttttttcgAttaactctttgtttttttgt	4	4	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114691790	T	T	114691790	1	4	65	0	1	0	0	0	0	0	0	0	212	348	12	5		5	ACTR3	2	114691790	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	15691854	114691790	128507583	35	76709											
THSD7B	80731	broad.mit.edu	37	chr2	138024670	138024670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaacatctctcaatgtttGtagcccattcgtgtgctttc	6	10	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138024670	T	T	138024670	1	4	65	0	1	0	0	0	0	0	0	0	16003	1392	48	3		3	THSD7B	2	138024670	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	23332880	138024670	105174703	36	76710											
LRP1B	53353	broad.mit.edu	37	chr2	141245284	141245284	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcttctctgtaatcaaagtCtatagcaataacattgttta	4	7	4	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141245284	A	A	141245284	3	1	65	1	0	0	0	0	1	0	0	0	9042	913	32	3	4790	3	LRP1B	2	141245284	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	3220614	141245284	101954089	37	76711											
LRP1B	53353	broad.mit.edu	37	chr2	142030132	142030132	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatcagactatatgccatCtacaagagacatacttgaga	7	9	2	4			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142030132	G	G	142030132	1	3	65	0	1	0	0	0	0	0	0	0	9042	928	32	4		4	LRP1B	2	142030132	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	784848	142030132	101169241	38	76712											
FIGN	55137	broad.mit.edu	37	chr2	164469428	164469428	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaggagtacaagtagataAtgagatggtctgggtaattc	13	3	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164469428	C	C	164469428	1	2	65	0	1	0	0	0	0	0	0	0	5948	116	4	5		5	FIGN	2	164469428	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	22439296	164469428	78729945	39	76713											
XIRP2	129446	broad.mit.edu	37	chr2	168097310	168097310	+	Intron	DEL	G	-	-													tgatgtgtttgattttgaatGgatgacttccaaagcacagt							TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	168097310	-	-	168097310	6	5	65	0	1	1	0	1	0	0	0	0	17557	1363	47	0		0	XIRP2	2	168097310	Intron	DEL	G	TCGA-17-Z036-01A-01W-0746-08	3627882	168097310	75102063	40	76714											
DYNC1I2	1781	broad.mit.edu	37	chr2	172584782	172584782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttttgctttttggtacaAtaatccctgaaaactttttt	5	6	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172584782	G	G	172584782	1	3	65	0	1	0	0	0	0	0	0	0	4883	116	4	5		5	DYNC1I2	2	172584782	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	4487472	172584782	70614591	41	76715											
TTN	7273	broad.mit.edu	37	chr2	179634724	179634724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttaaaaagtagatgaaaCcaaacaaatagatacatggg	8	4	0	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179634724	A	A	179634724	1	1	65	0	1	0	0	0	0	0	0	0	16861	522	18	3		3	TTN	2	179634724	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	7049942	179634724	63564649	42	76716											
PLCL1	5334	broad.mit.edu	37	chr2	198968574	198968574	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagttccatgaagaacttCataatttgggggcaaaagaa	11	5	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198968574	T	T	198968574	3	4	65	1	0	0	0	0	1	0	0	0	12134	826	29	4	3037	4	PLCL1	2	198968574	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	19333850	198968574	44230799	43	76717											
PARD3B	117583	broad.mit.edu	37	chr2	206417844	206417844	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgacagtgacccttttttGaaagaagtgactttgttgtt	9	5	0	5			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206417844	T	T	206417844	1	4	65	0	1	0	0	0	0	0	0	0	11538	1305	45	3		3	PARD3B	2	206417844	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	7449270	206417844	36781529	44	76718											
PTH2R	5746	broad.mit.edu	37	chr2	209324459	209324459	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatacccgttacacttttTccccccactggcttgggtgt	7	14	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209324459	C	C	209324459	1	2	65	0	1	0	0	0	0	0	0	0	12866	1798	62	5		5	PTH2R	2	209324459	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	2906615	209324459	33874914	45	76719											
SMARCAL1	50485	broad.mit.edu	37	chr2	217285167	217285167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcaaagggcgatgcatGctcatctccagggcctactt	10	11	3	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217285167	T	T	217285167	3	4	65	1	0	0	0	0	1	0	0	0	14887	1319	46	3	1018	3	SMARCAL1	2	217285167	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	7960708	217285167	25914206	46	76720											
SPEG	10290	broad.mit.edu	37	chr2	220345388	220345388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctatcactctccttttccCacaggcctgtgggtgttgtt	8	13	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220345388	A	A	220345388	1	1	65	0	1	0	0	0	0	0	0	0	15154	609	21	2		2	SPEG	2	220345388	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	3060221	220345388	22853985	47	76721											
GMPPA	29926	broad.mit.edu	37	chr2	220371144	220371144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgctatcaccatcctgGgtatggcttcctgggggcca	12	13	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220371144	T	T	220371144	3	4	65	1	0	0	0	0	1	0	0	0	6558	1246	43	2	1204	2	GMPPA	2	220371144	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	25756	220371144	22828229	48	76722											
RAB17	64284	broad.mit.edu	37	chr2	238486012	238486012	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcagccactgctgagccTtgaggaaggaatcctagaaa	10	11	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238486012	C	C	238486012	3	2	65	1	0	0	0	0	1	0	0	0	13010	1609	56	5	327	5	RAB17	2	238486012	Missense_Mutation	SNP	T	TCGA-17-Z036-01A-01W-0746-08	18114868	238486012	4713361	49	76723											
C3orf20	84077	broad.mit.edu	37	chr3	14756966	14756966	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgagcaccactgtcacagGgagggtctgggcatcctgcc	14	12	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14756966	A	A	14756966	1	1	65	0	1	0	0	0	0	0	0	0	2235	1247	43	4		4	C3orf20	3	14756966	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08		14756966	183265464	50	76724											
UBE2E1	7324	broad.mit.edu	37	chr3	23904905	23904905	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccctttctccctctgtgCccttccctacccactacata	2	20	3	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23904905	G	G	23904905	1	3	65	0	1	0	0	0	0	0	0	0	16978	754	26	4		4	UBE2E1	3	23904905	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	9147939	23904905	174117525	51	76725											
EPHA6	285220	broad.mit.edu	37	chr3	96585677	96585677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaattccagttgtgttgCttgatacaacaactgtactg	7	7	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96585677	A	A	96585677	3	1	65	1	0	0	0	0	1	0	0	0	5213	797	28	3	400	3	EPHA6	3	96585677	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	72680772	96585677	101436753	52	76726											
SENP7	57337	broad.mit.edu	37	chr3	101176113	101176113	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcattcttggaagcctcaTcaaaattctccacaagatca	4	13	6	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101176113	A	A	101176113	1	1	65	0	1	0	0	0	0	0	0	0	14164	1450	50	5		5	SENP7	3	101176113	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	4590436	101176113	96846317	53	76727											
ZBTB20	26137	broad.mit.edu	37	chr3	114570970	114570970	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgcttcctatatggttTttggtcccattagagtttta	7	6	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114570970	G	G	114570970	1	3	65	0	1	0	0	0	0	0	0	0	17655	1856	64	5		5	ZBTB20	3	114570970	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	13394857	114570970	83451460	54	76728											
SLC12A8	84561	broad.mit.edu	37	chr3	124909323	124909323	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacaggctcccacatgaAcagctgggtcttccaccagg	10	15	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124909323	G	G	124909323	3	3	65	1	0	0	0	0	1	0	0	0	14502	43	2	5	2098	5	SLC12A8	3	124909323	Missense_Mutation	SNP	A	TCGA-17-Z036-01A-01W-0746-08	10338353	124909323	73113107	55	76729											
RHO	6010	broad.mit.edu	37	chr3	129251219	129251219	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatccccatgattatcaTctttttctgctatgggcagc	6	13	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129251219	C	C	129251219	3	2	65	1	0	0	0	0	1	0	0	0	13439	1435	50	5	666	5	RHO	3	129251219	Missense_Mutation	SNP	T	TCGA-17-Z036-01A-01W-0746-08	4341896	129251219	68771211	56	76730											
DZIP1L	199221	broad.mit.edu	37	chr3	137787060	137787060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggggcgtggagcgggggCggacacctgggtcaggctgg	22	10	1	0	rs138745459		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137787060	A	A	137787060	3	1	65	1	0	0	0	0	1	0	0	0	4904	768	27	3	554	3	DZIP1L	3	137787060	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	8535841	137787060	60235370	57	76731											
CPB1	1360	broad.mit.edu	37	chr3	148577707	148577707	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatggctttctccttccagAatcccagatccgggctacct	7	14	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148577707	T	T	148577707	3	4	65	1	0	0	0	0	1	0	0	0	3828	246	9	5	1214	5	CPB1	3	148577707	Missense_Mutation	SNP	A	TCGA-17-Z036-01A-01W-0746-08	10790647	148577707	49444723	58	76732											
RNF13	11342	broad.mit.edu	37	chr3	149617365	149617365	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagaacactgaaggtgaaAggtgagcaaaagtgccaaca	13	6	0	4			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149617365	T	T	149617365	1	4	65	0	1	0	0	0	0	0	0	0	13548	87	3	5		5	RNF13	3	149617365	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	1039658	149617365	48405065	59	76733											
ABCC5	10057	broad.mit.edu	37	chr3	183682984	183682984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctgtacctccgtcaggtCgctgctgggaagaatggcca	14	12	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183682984	A	A	183682984	3	1	65	1	0	0	0	0	1	0	0	0	56	884	31	3	2361	3	ABCC5	3	183682984	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	34065619	183682984	14339446	60	76734											
ABCF3	55324	broad.mit.edu	37	chr3	183909039	183909039	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatctcgagtctcgcatctGtgtggtaaggctgctgtttc	12	9	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183909039	A	A	183909039	3	1	65	1	0	0	0	0	1	0	0	0	67	1377	48	4	1627	4	ABCF3	3	183909039	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	226055	183909039	14113391	61	76735											
RTP1	132112	broad.mit.edu	37	chr3	186917762	186917762	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgcaggaccagacgggctcAggctggaacttctgctctat	12	12	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186917762	T	T	186917762	2	4	65	1	0	0	0	0	0	0	0	1	13844	175	7	5		5	RTP1	3	186917762	Silent	SNP	A	TCGA-17-Z036-01A-01W-0746-08	3008723	186917762	11104668	62	76736											
TPRG1	285386	broad.mit.edu	37	chr3	188986439	188986439	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctataatagtttgtatctcTgaatgacaagaaagctcatc	6	7	3	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	188986439	C	C	188986439	1	2	65	0	1	0	0	0	0	0	0	0	16542	1595	55	5		5	TPRG1	3	188986439	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	2068677	188986439	9035991	63	76737											
OPA1	4976	broad.mit.edu	37	chr3	193336773	193336773	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtagtcttgaaagattttTtaaagtttttacttctttgg	8	3	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193336773	C	C	193336773	1	2	65	0	1	0	0	0	0	0	0	0	10965	1856	64	5		5	OPA1	3	193336773	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	4350334	193336773	4685657	64	76738											
C4orf50	389197	broad.mit.edu	37	chr4	5961120	5961120	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattacatttctaactccagCggtgatttatggacctggga	9	8	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5961120	G	G	5961120	2	3	65	1	0	0	0	0	0	0	0	1	2299	755	27	4		4	C4orf50	4	5961120	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08		5961120	185193156	65	76739											
STIM2	57620	broad.mit.edu	37	chr4	27009159	27009159	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttccttcttctaggttcGcatggctctgaaaaaggccg	9	12	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27009159	A	A	27009159	3	1	65	1	0	0	0	0	1	0	0	0	15402	1087	38	4	1016	4	STIM2	4	27009159	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	21048039	27009159	164145117	66	76740											
CORIN	10699	broad.mit.edu	37	chr4	47602165	47602165	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggccatacgtaataatgAgtttataggaatccactgaa	9	6	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47602165	T	T	47602165	1	4	65	0	1	0	0	0	0	0	0	0	3784	319	11	5		5	CORIN	4	47602165	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	20593006	47602165	143552111	67	76741											
FRYL	285527	broad.mit.edu	37	chr4	48715418	48715418	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtgcagagacacacatagGctcaaaataaagggatggag	12	7	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48715418	A	A	48715418	1	1	65	0	1	0	0	0	0	0	0	0	6124	1218	42	4		4	FRYL	4	48715418	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	1113253	48715418	142438858	68	76742											
FRYL	285527	broad.mit.edu	37	chr4	48715438	48715438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcaaaataaagggatggaGgaagatctaccaagcaaatg	11	6	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48715438	A	A	48715438	1	1	65	0	1	0	0	0	0	0	0	0	6124	1015	35	4		4	FRYL	4	48715438	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	20	48715438	142438838	69	76743											
UGT2A1	10941	broad.mit.edu	37	chr4	70505119	70505119	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaaacaggtatcacttcAaaattcacaggagaatcggg	10	7	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70505119	G	G	70505119	1	3	65	0	1	0	0	0	0	0	0	0	17079	127	5	5		5	UGT2A1	4	70505119	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	21789681	70505119	120649157	70	76744											
ANK2	287	broad.mit.edu	37	chr4	114288770	114288770	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgcacagcacaagcagaAagaggagcaagctgtttcta	10	10	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114288770	C	C	114288770	3	2	65	1	0	0	0	0	1	0	0	0	621	14	1	5	11312	5	ANK2	4	114288770	Missense_Mutation	SNP	A	TCGA-17-Z036-01A-01W-0746-08	43783651	114288770	76865506	71	76745											
FSTL5	56884	broad.mit.edu	37	chr4	162794636	162794636	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataaaattatttccttagttCcttccttccttccttccttc	1	13	0	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162794636	A	A	162794636	1	1	65	0	1	0	0	0	0	0	0	0	6140	870	30	3		3	FSTL5	4	162794636	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	48505866	162794636	28359640	72	76746											
SORBS2	8470	broad.mit.edu	37	chr4	186567769	186567769	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaattcaggtttattgggGagccctgggagcccagcgag	15	8	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186567769	A	A	186567769	1	1	65	0	1	0	0	0	0	0	0	0	15042	1189	41	4		4	SORBS2	4	186567769	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	23773133	186567769	4586507	73	76747											
SUB1	10923	broad.mit.edu	37	chr5	32591531	32591531	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagttttgttgttgagtgAaacttgcttatgtatatatt	8	3	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32591531	C	C	32591531	1	2	65	0	1	0	0	0	0	0	0	0	15480	261	9	5		5	SUB1	5	32591531	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08		32591531	148323729	74	76748											
LMBRD2	92255	broad.mit.edu	37	chr5	36136536	36136536	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagtatgatcgaggaatttCcaccaagccataccccaaca	6	14	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36136536	A	A	36136536	4	1	65	1	0	0	0	0	0	1	0	0	8917	864	30	3	1517	3	LMBRD2	5	36136536	Nonsense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	3545005	36136536	144778724	75	76749											
COL4A3BP	10087	broad.mit.edu	37	chr5	74680417	74680417	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttagagaatctatatgtctGagtttgaactacattgaaat	7	4	2	4			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74680417	A	A	74680417	1	1	65	0	1	0	0	0	0	0	0	0	3724	1305	45	4		4	COL4A3BP	5	74680417	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	38543881	74680417	106234843	76	76750											
APC	324	broad.mit.edu	37	chr5	112103015	112103015	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtcctgttcctatgggttCatttccaagaagagggtttg	11	8	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112103015	T	T	112103015	3	4	65	1	0	0	0	0	1	0	0	0	765	838	29	4	360	4	APC	5	112103015	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	37422598	112103015	68812245	77	76751											
APC	324	broad.mit.edu	37	chr5	112175753	112175771	+	Frame_Shift_Del	DEL	TTATTACATTTTGCCACGG	-	-													ttcttccagatgctgatactTtattacattttgccacggaa					rs41115	byFrequency;by1000genomes	TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112175771	-	-	112175753	7	5	65	1	0	1	0	1	0	0	0	0	765	1838	64	0	4520	0	APC	5	112175753	Frame_Shift_Del	DEL	TTATTACATTTTGCCACGG	TCGA-17-Z036-01A-01W-0746-08	72738	112175753	68739507	78	76752											
MYOT	9499	broad.mit.edu	37	chr5	137213289	137213289	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttcaagctcaggatgaCagtggtgcacaagactcgca	12	9	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137213289	G	G	137213289	3	3	65	1	0	0	0	0	1	0	0	0	10188	477	17	4	622	4	MYOT	5	137213289	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	25037536	137213289	43701971	79	76753											
ARHGEF37	389337	broad.mit.edu	37	chr5	148977891	148977891	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcttcttcttcttcttTcttcctcttcctcttcctct	0	16	10	0	rs56280149		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148977891	C	C	148977891	1	2	65	0	1	0	0	0	0	0	0	0	908	1798	62	5		5	ARHGEF37	5	148977891	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	11764602	148977891	31937369	80	76754											
SGCD	6444	broad.mit.edu	37	chr5	155798689	155798689	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgatactgacaaacttactGtagtttcagggcagcttgat	10	7	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155798689	C	C	155798689	1	2	65	0	1	0	0	0	0	0	0	0	14314	1392	48	4		4	SGCD	5	155798689	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	6820798	155798689	25116571	81	76755											
DOCK2	1794	broad.mit.edu	37	chr5	169484670	169484670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtggtgcacatgtcgcaGgtgagtctgggacattcgtg	17	7	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169484670	T	T	169484670	3	4	65	1	0	0	0	0	1	0	0	0	4727	1014	35	2	4641	2	DOCK2	5	169484670	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	13685981	169484670	11430590	82	76756											
COL23A1	91522	broad.mit.edu	37	chr5	177677124	177677124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctggaagggaagagatgGcaagaggggttatgccttcc	16	8	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177677124	T	T	177677124	1	4	65	0	1	0	0	0	0	0	0	0	3714	1218	42	3		3	COL23A1	5	177677124	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	8192454	177677124	3238136	83	76757											
ADAMTS2	9509	broad.mit.edu	37	chr5	178548768	178548768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctagagggaggagagaGgggctgcggccgcagggcac	19	9	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178548768	T	T	178548768	1	4	65	0	1	0	0	0	0	0	0	0	265	1015	35	2		2	ADAMTS2	5	178548768	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	871644	178548768	2366492	84	76758											
KIAA0319	9856	broad.mit.edu	37	chr6	24564671	24564671	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccatctttttaacacaggCgtgactttaagagggaggct	10	9	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24564671	T	T	24564671	1	4	65	0	1	0	0	0	0	0	0	0	8238	783	27	4		4	KIAA0319	6	24564671	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08		24564671	146550396	85	76759											
HLA-G	3135	broad.mit.edu	37	chr6	29797816	29797816	+	Intron	SNP	C	A	A													actgggaagcaccatccacaCtcatgggcctacccagcctg							TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29797816	A	A	29797816	1	1	65	0	1	0	0	0	0	0	0	0	7279	580	20	3		3	HLA-G	6	29797816	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	5233145	29797816	141317251	86	76760	349	2									
HLA-G	3135	broad.mit.edu	37	chr6	29797818	29797818	+	Intron	SNP	C	T	T													tgggaagcaccatccacactCatgggcctacccagcctggg					rs142070733	by1000genomes	TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29797818	T	T	29797818	1	4	65	0	1	0	0	0	0	0	0	0	7279	841	29	4		4	HLA-G	6	29797818	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2	29797818	141317249	87	76761	349	2									
TNXB	7148	broad.mit.edu	37	chr6	32015798	32015798	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtgtctggggctggaaaaGacagtgaggtgcatggagag	19	4	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32015798	T	T	32015798	1	4	65	0	1	0	0	0	0	0	0	0	16469	957	33	3		3	TNXB	6	32015798	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	2217980	32015798	139099269	88	76762											
KIAA0240	23506	broad.mit.edu	37	chr6	42825013	42825013	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaggcaccactctgataccAggaaaccctccatggacacc	7	15	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42825013	T	T	42825013	1	4	65	0	1	0	0	0	0	0	0	0	8234	203	7	5		5	KIAA0240	6	42825013	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	10809215	42825013	128290054	89	76763											
TBX18	9096	broad.mit.edu	37	chr6	85430904	85430904	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgcaccctctgccttccaGattcaaccaattttcctgcc	4	17	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85430904	T	T	85430904	1	4	65	0	1	0	0	0	0	0	0	0	15775	957	33	3		3	TBX18	6	85430904	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	42605891	85430904	85684163	90	76764											
SNX14	57231	broad.mit.edu	37	chr6	86292850	86292851	+	Intron	DNP	CA	TG	TG													tcaataaacataatccatcaCataaacagaaccaatcacaa							TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	86292851	TG	TG	86292850	1	4	65	0	1	0	0	0	0	0	0	0	14999	493	17	4		4	SNX14	6	86292850	Intron	DNP	CA	TCGA-17-Z036-01A-01W-0746-08	861946	86292850	84822217	91	76765											
EPB41L2	2037	broad.mit.edu	37	chr6	131197409	131197409	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatcttacaagtgaaaactCaaaaggtttccatatgtaat	5	6	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131197409	A	A	131197409	1	1	65	0	1	0	0	0	0	0	0	0	5195	841	29	3		3	EPB41L2	6	131197409	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	44904559	131197409	39917658	92	76766											
SDK1	221935	broad.mit.edu	37	chr7	3493810	3493810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcattctataaaaatttGgaggcaccatacagtaagaa	6	7	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3493810	T	T	3493810	1	4	65	0	1	0	0	0	0	0	0	0	14081	1363	47	2		2	SDK1	7	3493810	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08		3493810	155644853	93	76767											
DNAH11	8701	broad.mit.edu	37	chr7	21642431	21642431	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgctaaaatatgcctcaTgatccctcatttaaacaatt	3	9	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21642431	C	C	21642431	1	2	65	0	1	0	0	0	0	0	0	0	4639	1479	51	5		5	DNAH11	7	21642431	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	18148621	21642431	137496232	94	76768											
CREB5	9586	broad.mit.edu	37	chr7	28859057	28859057	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgttgtcttttatacTtagttatataagaaaaaagg	8	2	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28859057	A	A	28859057	1	1	65	0	1	0	0	0	0	0	0	0	3892	1624	56	5		5	CREB5	7	28859057	3'UTR	SNP	T	TCGA-17-Z036-01A-01W-0746-08	7216626	28859057	130279606	95	76769											
BBS9	27241	broad.mit.edu	37	chr7	33545232	33545232	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggaagcggcatttctgcCgctacaagaagacactcaag	10	11	3	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33545232	T	T	33545232	3	4	65	1	0	0	0	0	1	0	0	0	1347	652	23	4	2347	4	BBS9	7	33545232	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	4686175	33545232	125593431	96	76770											
DYNC1I1	1780	broad.mit.edu	37	chr7	95614100	95614100	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttcttccctaacaatctCttttacaaaaaaataaataa	0	8	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95614100	G	G	95614100	1	3	65	0	1	0	0	0	0	0	0	0	4882	928	32	4		4	DYNC1I1	7	95614100	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	62068868	95614100	63524563	97	76771											
LMTK2	22853	broad.mit.edu	37	chr7	97820037	97820037	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccattttctttttccaaCaggtctctgggtgtgacact	8	11	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97820037	T	T	97820037	1	4	65	0	1	0	0	0	0	0	0	0	8933	493	17	4		4	LMTK2	7	97820037	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2205937	97820037	61318626	98	76772											
RELN	5649	broad.mit.edu	37	chr7	103390040	103390040	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacatgctgtatttatgaaGaataatgtatcctaaaacta	5	6	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103390040	T	T	103390040	1	4	65	0	1	0	0	0	0	0	0	0	13328	957	33	3		3	RELN	7	103390040	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	5570003	103390040	55748623	99	76773											
LHFPL3	375612	broad.mit.edu	37	chr7	104308874	104308874	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggagacaagtatcgagatCgttatgattcagaccggtat	11	6	1	4			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104308874	T	T	104308874	1	4	65	0	1	0	0	0	0	0	0	0	8838	899	31	4		4	LHFPL3	7	104308874	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	918834	104308874	54829789	100	76774											
SRPK2	6733	broad.mit.edu	37	chr7	104895311	104895312	+	Intron	INS	-	T	T													acacccagctaatttttgtaINStttttagtagagatggggtt							TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104895312	T	T	104895311	6	5	65	0	1	1	1	0	0	0	0	0	15278	464	16	0		0	SRPK2	7	104895311	Intron	INS	-	TCGA-17-Z036-01A-01W-0746-08	586437	104895311	54243352	101	76775											
IMMP2L	83943	broad.mit.edu	37	chr7	110483920	110483920	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagtggtccgtgtgtcGgcatgggaggcagagagggt	20	5	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110483920	A	A	110483920	1	1	65	0	1	0	0	0	0	0	0	0	7787	1131	39	4		4	IMMP2L	7	110483920	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	5588609	110483920	48654743	102	76776											
NDUFA5	4698	broad.mit.edu	37	chr7	123197004	123197004	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatagaagggacaagaagaAtaaaaaaattttgtgggttt	10	1	0	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123197004	G	G	123197004	1	3	65	0	1	0	0	0	0	0	0	0	10363	116	4	5		5	NDUFA5	7	123197004	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	12713084	123197004	35941659	103	76777											
BPGM	669	broad.mit.edu	37	chr7	134346797	134346797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctcccgaagtattacgtGgcaaaaccattctgatatct	7	10	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134346797	T	T	134346797	3	4	65	1	0	0	0	0	1	0	0	0	1497	1348	47	2	540	2	BPGM	7	134346797	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	11149793	134346797	24791866	104	76778											
AKR1D1	6718	broad.mit.edu	37	chr7	137776536	137776536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggctacaaatcatgtccCagagatggtccgcccaaccc	9	14	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137776536	A	A	137776536	3	1	65	1	0	0	0	0	1	0	0	0	473	594	21	2	294	2	AKR1D1	7	137776536	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	3429739	137776536	21362127	105	76779											
MGAM	8972	broad.mit.edu	37	chr7	141794207	141794207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaggggtcgtcatcaccCgctccacatttccctcttct	8	16	4	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141794207	A	A	141794207	1	1	65	0	1	0	0	0	0	0	0	0	9634	667	23	1		1	MGAM	7	141794207	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	4017671	141794207	17344456	106	76780											
OR2A5	393046	broad.mit.edu	37	chr7	143748072	143748072	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggcctgtgctgacacctGgctcaaccaggtggtcatct	12	12	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143748072	C	C	143748072	3	2	65	1	0	0	0	0	1	0	0	0	11075	1357	47	4	580	4	OR2A5	7	143748072	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	1953865	143748072	15390591	107	76781											
SSPO	23145	broad.mit.edu	37	chr7	149489172	149489172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagccttgccctcaggacgGctgccccaatgccacttgct	10	16	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149489172	T	T	149489172	3	4	65	1	0	0	0	0	1	0	0	0	15307	1203	42	3	5555	3	SSPO	7	149489172	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	5741100	149489172	9649491	108	76782											
CSMD1	64478	broad.mit.edu	37	chr8	4797710	4797710	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatattgactgacctatttcCtctttaagaagatcctggcc	7	10	1	4			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4797710	G	G	4797710	1	3	65	0	1	0	0	0	0	0	0	0	3978	696	24	4		4	CSMD1	8	4797710	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08		4797710	141566312	109	76783											
SLC7A2	6542	broad.mit.edu	37	chr8	17412585	17412585	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacgttgactgcaggggtcAtttctggtaagctttacaaa	10	9	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17412585	G	G	17412585	1	3	65	0	1	0	0	0	0	0	0	0	14811	217	8	5		5	SLC7A2	8	17412585	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	12614875	17412585	128951437	110	76784											
PIWIL2	55124	broad.mit.edu	37	chr8	22138725	22138725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgcttccatcaggtatGtggaaaactaacttgagaaa	9	6	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22138725	T	T	22138725	1	4	65	0	1	0	0	0	0	0	0	0	12053	1392	48	3		3	PIWIL2	8	22138725	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	4726140	22138725	124225297	111	76785											
WHSC1L1	54904	broad.mit.edu	37	chr8	38133995	38133995	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagcattttttgccttctcTtcatttgttgacgcacatgc	6	10	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38133995	G	G	38133995	3	3	65	1	0	0	0	0	1	0	0	0	17490	1606	56	5	430	5	WHSC1L1	8	38133995	Missense_Mutation	SNP	T	TCGA-17-Z036-01A-01W-0746-08	15995270	38133995	108230027	112	76786											
ZMAT4	79698	broad.mit.edu	37	chr8	40454957	40454957	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgggcttgctgcttccccTgtctgatcctggatctgtgt	11	13	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40454957	A	A	40454957	1	1	65	0	1	0	0	0	0	0	0	0	17820	1595	55	5		5	ZMAT4	8	40454957	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	2320962	40454957	105909065	113	76787											
POTEA	340441	broad.mit.edu	37	chr8	43197475	43197475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatggattttaacggtaGgaccattgcataagtagaag	10	5	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43197475	T	T	43197475	1	4	65	0	1	0	0	0	0	0	0	0	12356	1015	35	2		2	POTEA	8	43197475	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	2742518	43197475	103166547	114	76788											
PENK	5179	broad.mit.edu	37	chr8	57358431	57358431	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcacgtcgcgcaatcctGgctgcattcggcccgcacgg	13	16	0	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57358431	A	A	57358431	4	1	65	1	0	0	0	0	0	1	0	0	11821	1357	47	4	729	4	PENK	8	57358431	Nonsense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	14160956	57358431	89005591	115	76789											
MTFR1	9650	broad.mit.edu	37	chr8	66617169	66617169	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaatctcactgcaggtctGtaagtcctacatttgttagt	7	9	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66617169	C	C	66617169	1	2	65	0	1	0	0	0	0	0	0	0	10019	1392	48	4		4	MTFR1	8	66617169	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	9258738	66617169	79746853	116	76790											
PREX2	80243	broad.mit.edu	37	chr8	68885363	68885363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctttctccaggcctcccCtgcttcttctctgaagtagt	6	17	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68885363	A	A	68885363	1	1	65	0	1	0	0	0	0	0	0	0	12583	696	24	2		2	PREX2	8	68885363	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2268194	68885363	77478659	117	76791											
SNTB1	6641	broad.mit.edu	37	chr8	121597977	121597977	+	Intron	DEL	T	-	-													tgttactttagcaaatcctgTtttttttgctggtgtttttt					rs67108333		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121597977	-	-	121597977	6	5	65	0	1	1	0	1	0	0	0	0	14986	1740	60	0		0	SNTB1	8	121597977	Intron	DEL	T	TCGA-17-Z036-01A-01W-0746-08	52712614	121597977	24766045	118	76792											
ASAP1	50807	broad.mit.edu	37	chr8	131299575	131299575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatagggtaggtaaggttaCttcagattaggaagagcttg	14	3	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131299575	A	A	131299575	1	1	65	0	1	0	0	0	0	0	0	0	1014	580	20	3		3	ASAP1	8	131299575	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	9701598	131299575	15064447	119	76793											
PLEC	5339	broad.mit.edu	37	chr8	145008878	145008878	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctccatctccttaaacttCaggaactgagaccacaggat	7	12	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145008878	T	T	145008878	2	4	65	1	0	0	0	0	0	0	0	1	12147	813	29	4		4	PLEC	8	145008878	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	13709303	145008878	1355144	120	76794											
ERMP1	79956	broad.mit.edu	37	chr9	5805697	5805697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taataaacgccgagcaaagtCcttggtaagtgagggtaaca	11	7	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5805697	A	A	5805697	3	1	65	1	0	0	0	0	1	0	0	0	5278	855	30	3	1105	3	ERMP1	9	5805697	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08		5805697	135407734	121	76795											
CHMP5	51510	broad.mit.edu	37	chr9	33265939	33265939	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctctgtattccttccTctctacctgccccttctgga	4	17	4	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33265939	A	A	33265939	1	1	65	0	1	0	0	0	0	0	0	0	3390	1566	54	5		5	CHMP5	9	33265939	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	27460242	33265939	107947492	122	76796											
SUSD1	64420	broad.mit.edu	37	chr9	114820656	114820656	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttcaaacatttaaatGtcatacgaagaagaaaatac	5	5	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114820656	T	T	114820656	1	4	65	0	1	0	0	0	0	0	0	0	15525	1392	48	3		3	SUSD1	9	114820656	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	81554717	114820656	26392775	123	76797											
PAEP	5047	broad.mit.edu	37	chr9	138454841	138454841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggagtggggcctggcctGtccccactctctctgcttca	13	14	3	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138454841	T	T	138454841	1	4	65	0	1	0	0	0	0	0	0	0	11476	1392	48	3		3	PAEP	9	138454841	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	23634185	138454841	2758590	124	76798											
FRMD4A	55691	broad.mit.edu	37	chr10	13782587	13782587	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctgtcttcactgtaattaGaagaaaagaatgctgttgtt	8	6	3	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13782587	C	C	13782587	1	2	65	0	1	0	0	0	0	0	0	0	6111	957	33	4		4	FRMD4A	10	13782587	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08		13782587	121752160	125	76799											
ACBD7	414149	broad.mit.edu	37	chr10	15121154	15121154	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacttctgctgctctggttCtatcagaatcatcttaattt	6	9	6	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15121154	G	G	15121154	1	3	65	0	1	0	0	0	0	0	0	0	127	928	32	4		4	ACBD7	10	15121154	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	1338567	15121154	120413593	126	76800											
CAMK2G	818	broad.mit.edu	37	chr10	75601804	75601804	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctcaaaacaggatcctcActcgccctggtcaaggtgtg	9	15	3	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75601804	G	G	75601804	1	3	65	0	1	0	0	0	0	0	0	0	2628	174	6	5		5	CAMK2G	10	75601804	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	60480650	75601804	59932943	127	76801											
KCNMA1	3778	broad.mit.edu	37	chr10	79279738	79279738	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtatgcagtgtgaggGtgtgcagtgtgaggtctggc	20	5	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79279738	A	A	79279738	1	1	65	0	1	0	0	0	0	0	0	0	8143	1276	44	4		4	KCNMA1	10	79279738	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	3677934	79279738	56255009	128	76802											
COL17A1	1308	broad.mit.edu	37	chr10	105807838	105807838	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaccaacctcttgggcctTggtgtccgtctgggccagca	13	13	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105807838	A	A	105807838	3	1	65	1	0	0	0	0	1	0	0	0	3706	1812	63	5	2349	5	COL17A1	10	105807838	Missense_Mutation	SNP	T	TCGA-17-Z036-01A-01W-0746-08	26528100	105807838	29726909	129	76803											
CASP7	840	broad.mit.edu	37	chr10	115485118	115485118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttcgtattatttgcttgCagcttctgaagaggaccata	9	7	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115485118	A	A	115485118	1	1	65	0	1	0	0	0	0	0	0	0	2702	725	25	3		3	CASP7	10	115485118	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	9677280	115485118	20049629	130	76804											
GFRA1	2674	broad.mit.edu	37	chr10	117911748	117911748	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatgatgtaagatggaccaGagaggaagcaggagcaccag	15	6	0	4			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117911748	A	A	117911748	1	1	65	0	1	0	0	0	0	0	0	0	6411	957	33	4		4	GFRA1	10	117911748	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	2426630	117911748	17622999	131	76805											
CPXM2	119587	broad.mit.edu	37	chr10	125557785	125557785	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaaaaaaaaaaaaAgaaatgaatcaggcctggat	7	3	1	3	rs67995538		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125557785	G	G	125557785	1	3	65	0	1	0	0	0	0	0	0	0	3870	87	3	5		5	CPXM2	10	125557785	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	7646037	125557785	9976962	132	76806											
HBG2	3048	broad.mit.edu	37	chr11	5592720	5592720	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccgttatagccatccccActgccaccatatccaccagc	4	18	0	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5592720	C	C	5592720	1	2	65	0	1	0	0	0	0	0	0	0	7049	174	6	5		5	HBG2	11	5592720	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08		5592720	129413796	133	76807											
OR10A6	390093	broad.mit.edu	37	chr11	7949666	7949666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagttctaacactgctgGggtttcacaagatatatggt	10	7	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7949666	T	T	7949666	3	4	65	1	0	0	0	0	1	0	0	0	10988	1232	43	2	403	2	OR10A6	11	7949666	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	2356946	7949666	127056850	134	76808											
PLEKHA7	144100	broad.mit.edu	37	chr11	16838657	16838657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgtagagctgccacacgGtgccatcccggtgcgcccgg	13	16	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16838657	T	T	16838657	3	4	65	1	0	0	0	0	1	0	0	0	12156	1261	44	3	1861	3	PLEKHA7	11	16838657	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	8888991	16838657	118167859	135	76809											
WT1	7490	broad.mit.edu	37	chr11	32452007	32452007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagagagggagggagagAgagagagagagagagagaga	22	0	0	8			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32452007	G	G	32452007	1	3	65	0	1	0	0	0	0	0	0	0	17535	319	11	5		5	WT1	11	32452007	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	15613350	32452007	102554509	136	76810											
EIF3M	10480	broad.mit.edu	37	chr11	32610469	32610469	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatgaagttgttaacggtAcctgccacaggtttgtggtg	12	6	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32610469	C	C	32610469	1	2	65	0	1	0	0	0	0	0	0	0	5065	406	14	5		5	EIF3M	11	32610469	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	158462	32610469	102396047	137	76811											
SLC22A24	283238	broad.mit.edu	37	chr11	62898908	62898908	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttgttcctttccatgttTagtgcttccttcaggaactc	8	10	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62898908	A	A	62898908	1	1	65	0	1	0	0	0	0	0	0	0	14567	1769	61	5		5	SLC22A24	11	62898908	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	30288439	62898908	72107608	138	76812											
SLC22A10	387775	broad.mit.edu	37	chr11	63046988	63046988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctctctgtgagagcagCacatgatatctgcttctagt	8	11	4	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63046988	A	A	63046988	1	1	65	0	1	0	0	0	0	0	0	0	14554	725	25	3		3	SLC22A10	11	63046988	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	148080	63046988	71959528	139	76813											
PICALM	8301	broad.mit.edu	37	chr11	85670153	85670153	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgtattgtaggatgtcttCtcataaataaaaatgctttg	7	4	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85670153	T	T	85670153	1	4	65	0	1	0	0	0	0	0	0	0	11975	928	32	4		4	PICALM	11	85670153	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	22623165	85670153	49336363	140	76814											
MMP1	4312	broad.mit.edu	37	chr11	102661456	102661457	+	Missense_Mutation	DNP	AA	TT	TT													tctttcatgaaaactgcatcAactttgtggccaattccagg					rs147162223	by1000genomes	TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	102661457	TT	TT	102661456	3	4	65	1	0	0	0	0	1	0	0	0	9741	117	5	5	139	5	MMP1	11	102661456	Missense_Mutation	DNP	AA	TCGA-17-Z036-01A-01W-0746-08	16991303	102661456	32345060	141	76815											
OR8D4	338662	broad.mit.edu	37	chr11	123777693	123777693	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgacattgtccctcttatTaaactctcctgctccagcac	5	14	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123777693	G	G	123777693	3	3	65	1	0	0	0	0	1	0	0	0	11327	1742	61	5	557	5	OR8D4	11	123777693	Missense_Mutation	SNP	T	TCGA-17-Z036-01A-01W-0746-08	21116237	123777693	11228823	142	76816											
CACNA1C	775	broad.mit.edu	37	chr12	2602398	2602398	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccccttgtgcgctggaaaCgggccacgggcggcagtgcc	15	14	0	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2602398	T	T	2602398	3	4	65	1	0	0	0	0	1	0	0	0	2566	536	19	4	985	4	CACNA1C	12	2602398	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08		2602398	131249497	143	76817											
KCNA6	3742	broad.mit.edu	37	chr12	4920770	4920770	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccacatcgggcctatgcAgagaaaagaatgctcacgga	10	11	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4920770	T	T	4920770	2	4	65	1	0	0	0	0	0	0	0	1	8077	175	7	5		5	KCNA6	12	4920770	Silent	SNP	A	TCGA-17-Z036-01A-01W-0746-08	2318372	4920770	128931125	144	76818											
A2M	2	broad.mit.edu	37	chr12	9243996	9243996	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtgatggtgtcagggactGttactcctacctcagccaca	11	12	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9243996	A	A	9243996	3	1	65	1	0	0	0	0	1	0	0	0	4	1377	48	4	2226	4	A2M	12	9243996	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	4323226	9243996	124607899	145	76819											
C12orf59	120939	broad.mit.edu	37	chr12	10342395	10342395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaatgagtttggatacttGtaaaaaatgaagcgacagtt	10	4	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10342395	A	A	10342395	1	1	65	0	1	0	0	0	0	0	0	0	1715	1392	48	4		4	C12orf59	12	10342395	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	1098399	10342395	123509500	146	76820											
ATF7IP	55729	broad.mit.edu	37	chr12	14578413	14578413	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacgtgctctccaggttagCatataacttaaatgttaaag	7	7	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14578413	T	T	14578413	1	4	65	0	1	0	0	0	0	0	0	0	1091	725	25	4		4	ATF7IP	12	14578413	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	4236018	14578413	119273482	147	76821											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	65	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	10819872	25398285	108453610	148	76822											
IFLTD1	160492	broad.mit.edu	37	chr12	25679284	25679284	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactatatcatatacaatgTcaagctatgcaacaccaaac	4	10	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25679284	A	A	25679284	1	1	65	0	1	0	0	0	0	0	0	0	7600	1682	58	5		5	IFLTD1	12	25679284	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	280999	25679284	108172611	149	76823											
SLC4A8	9498	broad.mit.edu	37	chr12	51863350	51863350	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgctgtttacatgcttTtagggaagacggactgtgtt	13	5	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51863350	C	C	51863350	1	2	65	0	1	0	0	0	0	0	0	0	14773	1856	64	5		5	SLC4A8	12	51863350	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	26184066	51863350	81988545	150	76824											
ERBB3	2065	broad.mit.edu	37	chr12	56492212	56492212	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcaaaaaaaaaaaaaaaaGaatttgggacttggaaatcc	6	5	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56492212	A	A	56492212	1	1	65	0	1	0	0	0	0	0	0	0	5250	957	33	4		4	ERBB3	12	56492212	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	4628862	56492212	77359683	151	76825											
MBD6	114785	broad.mit.edu	37	chr12	57920532	57920532	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgagtggagctggcttccCtgggatgcttggggccttgc	16	10	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57920532	T	T	57920532	3	4	65	1	0	0	0	0	1	0	0	0	9441	681	24	4	1622	4	MBD6	12	57920532	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	1428320	57920532	75931363	152	76826											
NAV3	89795	broad.mit.edu	37	chr12	78582417	78582417	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attccgaattgatacatccaCtagccttggtctgagctctg	8	11	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78582417	T	T	78582417	3	4	65	1	0	0	0	0	1	0	0	0	10279	565	20	4	5975	4	NAV3	12	78582417	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	20661885	78582417	55269478	153	76827											
CEP290	80184	broad.mit.edu	37	chr12	88520238	88520238	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaataaacacaatagaatCtgttatgcaaaaggaaagtt	7	4	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88520238	A	A	88520238	1	1	65	0	1	0	0	0	0	0	0	0	3283	928	32	3		3	CEP290	12	88520238	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	9937821	88520238	45331657	154	76828											
CHPT1	56994	broad.mit.edu	37	chr12	102108270	102108270	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttaatgattcttaaacttTgtttctttcagtatttatgg	5	5	4	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102108270	C	C	102108270	1	2	65	0	1	0	0	0	0	0	0	0	3401	1827	63	5		5	CHPT1	12	102108270	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	13588032	102108270	31743625	155	76829											
STAB2	55576	broad.mit.edu	37	chr12	104006714	104006714	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctgcaggtctgttggaGtttgctggaggtccactcca	13	10	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104006714	A	A	104006714	1	1	65	0	1	0	0	0	0	0	0	0	15356	1044	36	4		4	STAB2	12	104006714	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	1898444	104006714	29845181	156	76830											
SDS	10993	broad.mit.edu	37	chr12	113831717	113831717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgaacttctcaatggcgGccacagcctcctggtccgag	10	16	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113831717	T	T	113831717	3	4	65	1	0	0	0	0	1	0	0	0	14088	1203	42	3	236	3	SDS	12	113831717	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	9825003	113831717	20020178	157	76831											
TBX5	6910	broad.mit.edu	37	chr12	114805044	114805044	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaagaaagaaagaaaaAagaaacaaaaaaggaaagaa	7	1	0	5			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114805044	G	G	114805044	1	3	65	0	1	0	0	0	0	0	0	0	15783	29	1	5		5	TBX5	12	114805044	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	973327	114805044	19046851	158	76832											
TMEM132B	114795	broad.mit.edu	37	chr12	126013471	126013471	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtgtgttacattaattGtgtactttatttctgttatt	7	4	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126013471	A	A	126013471	1	1	65	0	1	0	0	0	0	0	0	0	16169	1392	48	4		4	TMEM132B	12	126013471	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	11208427	126013471	7838424	159	76833											
SLC15A4	121260	broad.mit.edu	37	chr12	129299352	129299352	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctctccacttcgcttctgGgaacagcaggaatacgtcag	10	13	3	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129299352	A	A	129299352	2	1	65	1	0	0	0	0	0	0	0	1	14514	1219	43	4		4	SLC15A4	12	129299352	Silent	SNP	G	TCGA-17-Z036-01A-01W-0746-08	3285881	129299352	4552543	160	76834											
LATS2	26524	broad.mit.edu	37	chr13	21549230	21549230	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaggccttggtgctaccttCgctggcatcgttccaagggc	12	14	0	0	rs113238499		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21549230	T	T	21549230	3	4	65	1	0	0	0	0	1	0	0	0	8719	893	31	4	224	4	LATS2	13	21549230	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08		21549230	93620648	161	76835											
SPG20	23111	broad.mit.edu	37	chr13	36875958	36875958	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgtgtaccaggggacagtCaaggatgttttgagtgtact	13	5	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36875958	A	A	36875958	1	1	65	0	1	0	0	0	0	0	0	0	15160	841	29	3		3	SPG20	13	36875958	3'UTR	SNP	C	TCGA-17-Z036-01A-01W-0746-08	15326728	36875958	78293920	162	76836											
ARL11	115761	broad.mit.edu	37	chr13	50204487	50204487	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagtgctgggattacaggTgtgagccactgcaccaggat	13	10	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50204487	C	C	50204487	1	2	65	0	1	0	0	0	0	0	0	0	929	1711	59	5		5	ARL11	13	50204487	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	13328529	50204487	64965391	163	76837											
NALCN	259232	broad.mit.edu	37	chr13	101944670	101944670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctctgtacatgaggaacaCccagccttcctgtgaggcgg	12	12	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101944670	A	A	101944670	3	1	65	1	0	0	0	0	1	0	0	0	10242	507	18	3	4517	3	NALCN	13	101944670	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	51740183	101944670	13225208	164	76838											
FGF14	2259	broad.mit.edu	37	chr13	102486431	102486431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatcacctccaagtgagaCtacaatagagactgaaaaaa	7	9	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102486431	A	A	102486431	1	1	65	0	1	0	0	0	0	0	0	0	5900	580	20	3		3	FGF14	13	102486431	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	541761	102486431	12683447	165	76839											
FGF14	2259	broad.mit.edu	37	chr13	103003025	103003025	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacacaggaaggggatgaccAgtcagccgacaagcactgta	12	10	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103003025	T	T	103003025	1	4	65	0	1	0	0	0	0	0	0	0	5900	203	7	5		5	FGF14	13	103003025	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	516594	103003025	12166853	166	76840											
OR4N2	390429	broad.mit.edu	37	chr14	20295636	20295636	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgagaacagaacagtgataaGagaattcatcctccttggtc	9	9	1	4			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20295636	C	C	20295636	3	2	65	1	0	0	0	0	1	0	0	0	11171	942	33	4	31	4	OR4N2	14	20295636	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08		20295636	87053904	167	76841											
OXA1L	5018	broad.mit.edu	37	chr14	23239013	23239013	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttccaggtacagtctttgcCcgctgcctgatttttcctct	7	13	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23239013	G	G	23239013	2	3	65	1	0	0	0	0	0	0	0	1	11422	610	22	4		4	OXA1L	14	23239013	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2943377	23239013	84110527	168	76842											
OXA1L	5018	broad.mit.edu	37	chr14	23240004	23240004	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgacttttccaccccacttCttttggcagctaggtgctga	8	14	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23240004	A	A	23240004	1	1	65	0	1	0	0	0	0	0	0	0	11422	928	32	3		3	OXA1L	14	23240004	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	991	23240004	84109536	169	76843											
IRF9	10379	broad.mit.edu	37	chr14	24632300	24632300	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggttcctgagaggggccgCatggatgttgctgagcccta	16	9	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24632300	T	T	24632300	2	4	65	1	0	0	0	0	0	0	0	1	7907	697	25	4		4	IRF9	14	24632300	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	1392296	24632300	82717240	170	76844											
NPAS3	64067	broad.mit.edu	37	chr14	34227374	34227374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattccacaatccagcctGcttcacctcctccagcacct	4	19	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34227374	T	T	34227374	1	4	65	0	1	0	0	0	0	0	0	0	10659	1334	46	3		3	NPAS3	14	34227374	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	9595074	34227374	73122166	171	76845											
BAZ1A	11177	broad.mit.edu	37	chr14	35240624	35240624	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttttaagattatcaatttCattatgtcagccaataaagt	5	5	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35240624	T	T	35240624	1	4	65	0	1	0	0	0	0	0	0	0	1334	841	29	4		4	BAZ1A	14	35240624	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	1013250	35240624	72108916	172	76846											
KCNH5	27133	broad.mit.edu	37	chr14	63405823	63405823	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcccctcaactagccaatCaaacaagtcagataaagtca	4	13	5	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63405823	A	A	63405823	1	1	65	0	1	0	0	0	0	0	0	0	8105	841	29	3		3	KCNH5	14	63405823	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	28165199	63405823	43943717	173	76847											
PAPOLA	10914	broad.mit.edu	37	chr14	96993836	96993836	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactttttcacctcattctAtgataagttgaaattacagg	6	7	3	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96993836	G	G	96993836	3	3	65	1	0	0	0	0	1	0	0	0	11523	449	16	5	419	5	PAPOLA	14	96993836	Missense_Mutation	SNP	A	TCGA-17-Z036-01A-01W-0746-08	33588013	96993836	10355704	174	76848											
ATP10A	57194	broad.mit.edu	37	chr15	25959177	25959177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccgttgctggcgatggccGaggtgggctggcccagcctc	17	13	0	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25959177	A	A	25959177	3	1	65	1	0	0	0	0	1	0	0	0	1120	1059	37	4	2559	4	ATP10A	15	25959177	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08		25959177	76572215	175	76849											
HERC2	8924	broad.mit.edu	37	chr15	28370037	28370037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtgtggttaacatttaCtgagcctgaattattttcac	7	8	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28370037	A	A	28370037	1	1	65	0	1	0	0	0	0	0	0	0	7125	580	20	3		3	HERC2	15	28370037	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2410860	28370037	74161355	176	76850											
HERC2	8924	broad.mit.edu	37	chr15	28502159	28502159	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acataaaccttcttacaaatCcctaagacacttacaaaagg	3	11	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28502159	T	T	28502159	1	4	65	0	1	0	0	0	0	0	0	0	7125	870	30	4		4	HERC2	15	28502159	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	132122	28502159	74029233	177	76851											
RYR3	6263	broad.mit.edu	37	chr15	33920123	33920123	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgactgattagatgggggAgtagtgccaggggaaggata	17	4	0	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33920123	G	G	33920123	1	3	65	0	1	0	0	0	0	0	0	0	13881	319	11	5		5	RYR3	15	33920123	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	5417964	33920123	68611269	178	76852											
TGM7	116179	broad.mit.edu	37	chr15	43577065	43577065	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggcatttcggtcatagtaCgtatcgatggtcaagttcct	10	9	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43577065	A	A	43577065	2	1	65	1	0	0	0	0	0	0	0	1	15958	523	19	3		3	TGM7	15	43577065	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	9656942	43577065	58954327	179	76853											
TP53BP1	7158	broad.mit.edu	37	chr15	43701471	43701471	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggcccaagtaatttccaTagatgttctctctgcctcac	7	12	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43701471	C	C	43701471	1	2	65	0	1	0	0	0	0	0	0	0	16507	1421	49	5		5	TP53BP1	15	43701471	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	124406	43701471	58829921	180	76854											
UNC13C	440279	broad.mit.edu	37	chr15	54847733	54847733	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagattataatgctcctataTatacatcgagagaggccccc	8	10	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54847733	C	C	54847733	1	2	65	0	1	0	0	0	0	0	0	0	17112	1421	49	5		5	UNC13C	15	54847733	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	11146262	54847733	47683659	181	76855											
ALDH1A2	8854	broad.mit.edu	37	chr15	58272421	58272421	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagtatttgatgccaaTgtccaccccgctctgcggcc	9	15	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58272421	C	C	58272421	1	2	65	0	1	0	0	0	0	0	0	0	491	1479	51	5		5	ALDH1A2	15	58272421	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	3424688	58272421	44258971	182	76856											
MEGF11	84465	broad.mit.edu	37	chr15	66370300	66370300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggagatgagcacttcccGgcaggcaatagagagcaggg	15	9	0	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66370300	T	T	66370300	1	4	65	0	1	0	0	0	0	0	0	0	9554	1131	39	1		1	MEGF11	15	66370300	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	8097879	66370300	36161092	183	76857											
TMC3	342125	broad.mit.edu	37	chr15	81664999	81664999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgccatgagatctttctGgaactgtatattctggaaga	10	6	3	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81664999	T	T	81664999	3	4	65	1	0	0	0	0	1	0	0	0	16109	1357	47	2	3217	2	TMC3	15	81664999	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	15294699	81664999	20866393	184	76858											
C16orf62	57020	broad.mit.edu	37	chr16	19641074	19641074	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttaatgttaagatgttttCctttctctttgtaggactac	6	7	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19641074	T	T	19641074	1	4	65	0	1	0	0	0	0	0	0	0	1839	870	30	4		4	C16orf62	16	19641074	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08		19641074	70713679	185	76859											
ACSM5	54988	broad.mit.edu	37	chr16	20451873	20451873	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaaaggtgtgcagcttcCaaacggcatccccaggatca	10	12	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20451873	G	G	20451873	1	3	65	0	1	0	0	0	0	0	0	0	187	609	21	4		4	ACSM5	16	20451873	3'UTR	SNP	C	TCGA-17-Z036-01A-01W-0746-08	810799	20451873	69902880	186	76860											
N4BP1	9683	broad.mit.edu	37	chr16	48576829	48576829	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatcttcaatccaacaccaTggcagaaagcgcatttagat	6	11	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48576829	C	C	48576829	3	2	65	1	0	0	0	0	1	0	0	0	10203	1464	51	5	17	5	N4BP1	16	48576829	Missense_Mutation	SNP	T	TCGA-17-Z036-01A-01W-0746-08	28124956	48576829	41777924	187	76861											
THAP11	57215	broad.mit.edu	37	chr16	67876864	67876864	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagcagcagtcctcaccctCtgcctccactgcccagactg	8	19	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67876864	T	T	67876864	3	4	65	1	0	0	0	0	1	0	0	0	15966	913	32	4	409	4	THAP11	16	67876864	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	19300035	67876864	22477889	188	76862											
MTSS1L	92154	broad.mit.edu	37	chr16	70697927	70697927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagcctctttggggaggCcttggcgaggtccggtgcca	17	11	1	1	rs144544231	byFrequency	TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70697927	A	A	70697927	3	1	65	1	0	0	0	0	1	0	0	0	10057	739	26	3	350	3	MTSS1L	16	70697927	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	2821063	70697927	19656826	189	76863											
WRAP53	55135	broad.mit.edu	37	chr17	7606726	7606726	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtggtgtgggggggcgccAgactccagcatccctgatga	17	10	0	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7606726	T	T	7606726	2	4	65	1	0	0	0	0	0	0	0	1	17527	175	7	5		5	WRAP53	17	7606726	Silent	SNP	A	TCGA-17-Z036-01A-01W-0746-08		7606726	73588484	190	76864											
KRBA2	124751	broad.mit.edu	37	chr17	8273312	8273312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcatgcgtgtccgcccacCatgtccaatactgagatgtg	11	12	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8273312	A	A	8273312	3	1	65	1	0	0	0	0	1	0	0	0	8511	594	21	2	863	2	KRBA2	17	8273312	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	666586	8273312	72921898	191	76865											
CCDC42	146849	broad.mit.edu	37	chr17	8633556	8633556	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagcccagcgttaactcCgccccccagaggcctcccct	9	19	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8633556	A	A	8633556	1	1	65	0	1	0	0	0	0	0	0	0	2841	667	23	1		1	CCDC42	17	8633556	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	360244	8633556	72561654	192	76866											
MYH4	4622	broad.mit.edu	37	chr17	10362897	10362897	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctaaacaaagtagaattgAttctttgaatacttattttc	4	5	2	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10362897	T	T	10362897	1	4	65	0	1	0	0	0	0	0	0	0	10131	348	12	5		5	MYH4	17	10362897	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	1729341	10362897	70832313	193	76867											
TAOK1	57551	broad.mit.edu	37	chr17	27805322	27805322	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcaattacacatggtgctCttcagggattagcctactta	8	10	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27805322	T	T	27805322	3	4	65	1	0	0	0	0	1	0	0	0	15666	913	32	4	424	4	TAOK1	17	27805322	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	17442425	27805322	53389888	194	76868											
ARHGAP27	201176	broad.mit.edu	37	chr17	43474364	43474364	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtccactctgctgctctcGctctcctctgggggcagctc	10	16	4	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43474364	C	C	43474364	3	2	65	1	0	0	0	0	1	0	0	0	878	1078	38	4	828	4	ARHGAP27	17	43474364	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	15669042	43474364	37720846	195	76869											
GIP	2695	broad.mit.edu	37	chr17	47038345	47038345	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcgctggggttcttggctgGggagctgcaagggaacagtc	17	8	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47038345	C	C	47038345	3	2	65	1	0	0	0	0	1	0	0	0	6455	1232	43	4	114	4	GIP	17	47038345	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	3563981	47038345	34156865	196	76870											
SCPEP1	59342	broad.mit.edu	37	chr17	55058573	55058573	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaacttctcagaactgccCctggtcatgtggcttcaggt	10	11	3	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55058573	A	A	55058573	2	1	65	1	0	0	0	0	0	0	0	1	14048	610	22	2		2	SCPEP1	17	55058573	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	8020228	55058573	26136637	197	76871											
POLG2	11232	broad.mit.edu	37	chr17	62493021	62493021	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccccgcatctactcgaccCccaaacccagacaacaggca	6	19	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62493021	T	T	62493021	2	4	65	1	0	0	0	0	0	0	0	1	12296	610	22	4		4	POLG2	17	62493021	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	7434448	62493021	18702189	198	76872											
KIAA0195	9772	broad.mit.edu	37	chr17	73491564	73491564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagagaggtggtgggcaggCggtggaggggagggatgctg	25	3	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73491564	T	T	73491564	1	4	65	0	1	0	0	0	0	0	0	0	8230	783	27	4		4	KIAA0195	17	73491564	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	10998543	73491564	7703646	199	76873											
LLGL2	3993	broad.mit.edu	37	chr17	73567189	73567189	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctgaaggacagtgagtgGccagcctggggttggggggc	19	8	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73567189	A	A	73567189	1	1	65	0	1	0	0	0	0	0	0	0	8908	1218	42	4		4	LLGL2	17	73567189	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	75625	73567189	7628021	200	76874											
RPTOR	57521	broad.mit.edu	37	chr17	78704429	78704429	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcagcccgtcgatcttcGtctacgactgctccaatgct	10	14	2	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78704429	A	A	78704429	3	1	65	1	0	0	0	0	1	0	0	0	13776	1145	40	4	595	4	RPTOR	17	78704429	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	5137240	78704429	2490781	201	76875											
KCTD1	284252	broad.mit.edu	37	chr18	24179532	24179532	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgttgcagtctgcccAcaaagaatccagctttgaca	8	13	1	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24179532	T	T	24179532	1	4	65	0	1	0	0	0	0	0	0	0	8166	174	6	5		5	KCTD1	18	24179532	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08		24179532	53897716	202	76876											
ASXL3	80816	broad.mit.edu	37	chr18	31325198	31325198	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacagcaccagagagaaacGttgaaattccgcccagctct	8	12	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31325198	A	A	31325198	3	1	65	1	0	0	0	0	1	0	0	0	1072	1145	40	4	5432	4	ASXL3	18	31325198	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	7145666	31325198	46752050	203	76877											
SLC14A2	8170	broad.mit.edu	37	chr18	43026868	43026868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcattttcatgagccctcGgcttcctatctccttccctc	5	17	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43026868	T	T	43026868	1	4	65	0	1	0	0	0	0	0	0	0	14510	1131	39	1		1	SLC14A2	18	43026868	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	11701670	43026868	35050380	204	76878											
KATNAL2	83473	broad.mit.edu	37	chr18	44543313	44543313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggggaccccttccacgtcGccgagggcgtccggattgtt	14	13	0	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44543313	A	A	44543313	1	1	65	0	1	0	0	0	0	0	0	0	8056	1074	38	4		4	KATNAL2	18	44543313	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	1516445	44543313	33533935	205	76879											
ZNF407	55628	broad.mit.edu	37	chr18	72523303	72523303	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatctcacaccagttagaAtggcaatcattaaaaagtca	5	10	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72523303	G	G	72523303	1	3	65	0	1	0	0	0	0	0	0	0	18014	116	4	5		5	ZNF407	18	72523303	Intron	SNP	A	TCGA-17-Z036-01A-01W-0746-08	27979990	72523303	5553945	206	76880											
ZNF257	113835	broad.mit.edu	37	chr19	22235432	22235432	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggtcctcctggaagcctaGaaatggtgagagtgctgggt	15	8	0	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22235432	T	T	22235432	1	4	65	0	1	0	0	0	0	0	0	0	17926	957	33	3		3	ZNF257	19	22235432	5'UTR	SNP	G	TCGA-17-Z036-01A-01W-0746-08		22235432	36893551	207	76881											
ZNF536	9745	broad.mit.edu	37	chr19	30934468	30934468	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctgcctctcttttcagGgatggaagaagcgagcctgt	11	10	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934468	T	T	30934468	1	4	65	0	1	0	0	0	0	0	0	0	18101	1246	43	2		2	ZNF536	19	30934468	5'UTR	SNP	G	TCGA-17-Z036-01A-01W-0746-08	8699036	30934468	28194515	208	76882											
ZNF146	7705	broad.mit.edu	37	chr19	36724460	36724460	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttattgatcattatcggGcgtttctcggagagggggat	13	5	2	2			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36724460	A	A	36724460	1	1	65	0	1	0	0	0	0	0	0	0	17859	1218	42	4		4	ZNF146	19	36724460	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	5789992	36724460	22404523	209	76883											
ZNF146	7705	broad.mit.edu	37	chr19	36724504	36724504	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggacaatagggtaatagTggagagaaggtcagcaggaa	16	4	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36724504	C	C	36724504	1	2	65	0	1	0	0	0	0	0	0	0	17859	1711	59	5		5	ZNF146	19	36724504	Intron	SNP	T	TCGA-17-Z036-01A-01W-0746-08	44	36724504	22404479	210	76884											
ZNF567	163081	broad.mit.edu	37	chr19	37209889	37209889	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agactttttagtgaaattcaAggaacaccaagagaagtatt	8	5	1	3			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37209889	G	G	37209889	3	3	65	1	0	0	0	0	1	0	0	0	18125	72	3	5	180	5	ZNF567	19	37209889	Missense_Mutation	SNP	A	TCGA-17-Z036-01A-01W-0746-08	485385	37209889	21919094	211	76885											
RASGRP4	115727	broad.mit.edu	37	chr19	38912825	38912825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccaaggagtcatgggaGcaccttctttcggacagacc	11	14	2	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38912825	T	T	38912825	1	4	65	0	1	0	0	0	0	0	0	0	13185	986	34	3		3	RASGRP4	19	38912825	Intron	SNP	G	TCGA-17-Z036-01A-01W-0746-08	1702936	38912825	20216158	212	76886											
PPP1R13L	10848	broad.mit.edu	37	chr19	45899438	45899438	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcaccttgccggtgccCcccagtccatccaggctgct	8	20	1	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45899438	T	T	45899438	2	4	65	1	0	0	0	0	0	0	0	1	12459	610	22	4		4	PPP1R13L	19	45899438	Silent	SNP	C	TCGA-17-Z036-01A-01W-0746-08	6986613	45899438	13229545	213	76887											
RALGAPA2	57186	broad.mit.edu	37	chr20	20569944	20569944	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttctctcttcacatgtcCtttattctcttgaataggct	5	10	4	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20569944	G	G	20569944	3	3	65	1	0	0	0	0	1	0	0	0	13122	690	24	4	3302	4	RALGAPA2	20	20569944	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08		20569944	42455576	214	76888											
EPB41L1	2036	broad.mit.edu	37	chr20	34776563	34776563	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCagagagagagagagagagag	10	11	0	5	rs2425184		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34776563	G	G	34776563	1	3	65	0	1	0	0	0	0	0	0	0	5194	493	17	4		4	EPB41L1	20	34776563	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08	14206619	34776563	28248957	215	76889											
SLC12A5	57468	broad.mit.edu	37	chr20	44672539	44672539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctccgttgttctgtttgGggcctgcattgagggggtcg	16	9	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44672539	A	A	44672539	3	1	65	1	0	0	0	0	1	0	0	0	14499	1232	43	4	1528	4	SLC12A5	20	44672539	Missense_Mutation	SNP	G	TCGA-17-Z036-01A-01W-0746-08	9895976	44672539	18352981	216	76890											
DDX27	55661	broad.mit.edu	37	chr20	47835864	47835864	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggtcgaacggggagggCggcaggggctctggaacgga	21	7	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47835864	T	T	47835864	1	4	65	0	1	0	0	0	0	0	0	0	4387	783	27	4		4	DDX27	20	47835864	5'UTR	SNP	C	TCGA-17-Z036-01A-01W-0746-08	3163325	47835864	15189656	217	76891											
ZNF831	128611	broad.mit.edu	37	chr20	57769451	57769451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgggccccgacccgtgttCccccctccagcctggctcct	11	20	0	0			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57769451	A	A	57769451	3	1	65	1	0	0	0	0	1	0	0	0	18314	855	30	3	3379	3	ZNF831	20	57769451	Missense_Mutation	SNP	C	TCGA-17-Z036-01A-01W-0746-08	9933587	57769451	5256069	218	76892											
LARGE	9215	broad.mit.edu	37	chr22	33953958	33953958	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagcctcgccctttccCagctgaattccagcgccttc	8	18	0	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33953958	T	T	33953958	1	4	65	0	1	0	0	0	0	0	0	0	8699	609	21	4		4	LARGE	22	33953958	Intron	SNP	C	TCGA-17-Z036-01A-01W-0746-08		33953958	17350608	219	76893											
TNMD	64102	broad.mit.edu	37	chrX	99839984	99839984	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtctctcagtcctctcaaAgcaaggaaagagtactgtgt	10	9	3	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99839984	G	G	99839984	1	3	65	0	1	0	0	0	0	0	0	0	16445	87	3	5		5	TNMD	23	99839984	5'UTR	SNP	A	TCGA-17-Z036-01A-01W-0746-08		99839984	55430576	220	76894											
SLITRK2	84631	broad.mit.edu	37	chrX	144905148	144905148	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttagaatacagttctttggActtactgcacttaggaaaca	7	8	1	1			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144905148	T	T	144905148	3	4	65	1	0	0	0	0	1	0	0	0	14857	275	10	5	1207	5	SLITRK2	23	144905148	Missense_Mutation	SNP	A	TCGA-17-Z036-01A-01W-0746-08	45065164	144905148	10365412	221	76895											
MTOR	2475	broad.mit.edu	37	chr1	11167534	11167534	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtgatgggcacatctggGcctccagttaccagaaaggg	13	10	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11167534	T	T	11167534	1	4	66	0	1	0	0	0	0	0	0	0	10048	1218	42	3		3	MTOR	1	11167534	3'UTR	SNP	G	TCGA-17-Z037-01A-01W-0746-08		11167534	238083087	1	76896											
PRDM2	7799	broad.mit.edu	37	chr1	14105149	14105149	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaagaagatgatgatgatGatgagttggaagacgagggg	17	1	0	9			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14105149	A	A	14105149	3	1	66	1	0	0	0	0	1	0	0	0	12564	1290	45	4	885	4	PRDM2	1	14105149	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2937615	14105149	235145472	2	76897											
NBPF1	55672	broad.mit.edu	37	chr1	16894079	16894082	+	Intron	DEL	ACAG	-	-													acacacacacacacacacacAcagagtgagctcagtgaatt					rs71267862		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16894082	-	-	16894079	6	5	66	0	1	1	0	1	0	0	0	0	10286	174	6	0		0	NBPF1	1	16894079	Intron	DEL	ACAG	TCGA-17-Z037-01A-01W-0746-08	2788930	16894079	232356542	3	76898											
KDM1A	23028	broad.mit.edu	37	chr1	23408693	23408693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctcgtaatgacttttGctcctggtttttcttttagc	9	8	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23408693	T	T	23408693	1	4	66	0	1	0	0	0	0	0	0	0	8192	1334	46	3		3	KDM1A	1	23408693	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	6514614	23408693	225841928	4	76899											
LDLRAP1	26119	broad.mit.edu	37	chr1	25881403	25881403	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactctgaaggtgtcgccacGgggaattatcctgacagaca	12	10	1	3	rs139877665	byFrequency	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25881403	A	A	25881403	3	1	66	1	0	0	0	0	1	0	0	0	8780	1116	39	4	294	4	LDLRAP1	1	25881403	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2472710	25881403	223369218	5	76900											
SCMH1	22955	broad.mit.edu	37	chr1	41579129	41579129	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggcaaatgaaatgagGgttcttcctgtccacagctt	12	9	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41579129	A	A	41579129	3	1	66	1	0	0	0	0	1	0	0	0	14021	1232	43	4	1477	4	SCMH1	1	41579129	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	15697726	41579129	207671492	6	76901											
MAST2	23139	broad.mit.edu	37	chr1	46497165	46497165	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcccgccaccggctgctctCtggggactcaacagagaagc	13	15	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46497165	T	T	46497165	3	4	66	1	0	0	0	0	1	0	0	0	9417	913	32	4	3189	4	MAST2	1	46497165	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	4918036	46497165	202753456	7	76902											
CYB5RL	606495	broad.mit.edu	37	chr1	54661235	54661235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaagggttctgtgggccGtagctgcatccaggcttcct	14	11	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54661235	A	A	54661235	3	1	66	1	0	0	0	0	1	0	0	0	4163	1144	40	4	916	4	CYB5RL	1	54661235	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	8164070	54661235	194589386	8	76903											
LPHN2	23266	broad.mit.edu	37	chr1	82408983	82408983	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaattaagagtggcgaggCcataattaactatgccaact	9	7	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82408983	T	T	82408983	3	4	66	1	0	0	0	0	1	0	0	0	9003	739	26	4	742	4	LPHN2	1	82408983	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	27747748	82408983	166841638	9	76904											
ABCA4	24	broad.mit.edu	37	chr1	94544441	94544441	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccatctcccaacttccTgggctgacagaatctaattt	5	13	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94544441	C	C	94544441	1	2	66	0	1	0	0	0	0	0	0	0	34	1595	55	5		5	ABCA4	1	94544441	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	12135458	94544441	154706180	10	76905											
CELSR2	1952	broad.mit.edu	37	chr1	109807587	109807587	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgccccccatggctatacCtgcgagtgtcccccaaatta	8	15	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109807587	T	T	109807587	2	4	66	1	0	0	0	0	0	0	0	1	3252	668	24	4		4	CELSR2	1	109807587	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	15263146	109807587	139443034	11	76906											
DENND2C	163259	broad.mit.edu	37	chr1	115202403	115202406	+	Intron	DEL	TCCC	-	-													ctccgtcttccttccttcctTccctccctccctccctccct					rs112675821		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115202406	-	-	115202403	6	5	66	0	1	1	0	1	0	0	0	0	4470	1798	62	0		0	DENND2C	1	115202403	Intron	DEL	TCCC	TCGA-17-Z037-01A-01W-0746-08	5394816	115202403	134048218	12	76907											
TBX15	6913	broad.mit.edu	37	chr1	119467377	119467377	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatcagggtgtatataaacTcttgggggcacaggggaatc	14	6	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119467377	A	A	119467377	3	1	66	1	0	0	0	0	1	0	0	0	15774	1548	54	5	1243	5	TBX15	1	119467377	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	4264974	119467377	129783244	13	76908											
NOTCH2	4853	broad.mit.edu	37	chr1	120539849	120539849	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctcacatttctgccctgtGaagcctgtgaggcatttgca	10	11	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120539849	A	A	120539849	2	1	66	1	0	0	0	0	0	0	0	1	10643	1281	45	4		4	NOTCH2	1	120539849	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1072472	120539849	128710772	14	76909											
PEX11B	8799	broad.mit.edu	37	chr1	145522602	145522602	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagtcttctgcttgtagcCggcgactgaaaggttctgga	13	8	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145522602	T	T	145522602	3	4	66	1	0	0	0	0	1	0	0	0	11833	643	23	4	495	4	PEX11B	1	145522602	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	24982753	145522602	103728019	15	76910											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149398967	149398967	+	RNA	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctctcccgcgatgcgctcGaagatgtcgttgacgaagga	13	12	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149398967	T	T	149398967	1	4	66	0	1	0	0	0	0	0	0	0	7247	1049	37	3		3	HIST2H2BF	1	149398967	RNA	SNP	G	TCGA-17-Z037-01A-01W-0746-08	3876365	149398967	99851654	16	76911											
LINGO4	339398	broad.mit.edu	37	chr1	151774060	151774060	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgccaaagtccaggtggCggcggagccggagcagccag	16	12	0	0	rs143135535		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151774060	T	T	151774060	3	4	66	1	0	0	0	0	1	0	0	0	8890	768	27	4	664	4	LINGO4	1	151774060	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2375093	151774060	97476561	17	76912											
SH2D2A	9047	broad.mit.edu	37	chr1	156779567	156779567	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccaaagtttgattcttcGgtcctcagggaaagtcctgc	9	11	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156779567	A	A	156779567	2	1	66	1	0	0	0	0	0	0	0	1	14345	1103	39	4		4	SH2D2A	1	156779567	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	5005507	156779567	92471054	18	76913											
FCRL3	115352	broad.mit.edu	37	chr1	157650553	157650553	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatcgggttgctatctccAggatttactgtgagagaaga	11	6	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157650553	G	G	157650553	2	3	66	1	0	0	0	0	0	0	0	1	5853	175	7	5		5	FCRL3	1	157650553	Silent	SNP	A	TCGA-17-Z037-01A-01W-0746-08	870986	157650553	91600068	19	76914											
AIM2	9447	broad.mit.edu	37	chr1	159035745	159035745	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaattgttccaaggggctgAgtttgaagcgtgttgatctt	12	6	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159035745	G	G	159035745	2	3	66	1	0	0	0	0	0	0	0	1	432	291	11	5		5	AIM2	1	159035745	Silent	SNP	A	TCGA-17-Z037-01A-01W-0746-08	1385192	159035745	90214876	20	76915											
TPR	7175	broad.mit.edu	37	chr1	186307308	186307308	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatggtttccttttcagttcTtactttatttagatcttcct	5	8	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186307308	A	A	186307308	4	1	66	1	0	0	0	0	0	1	0	0	16540	1617	56	5	2956	5	TPR	1	186307308	Nonsense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	27271563	186307308	62943313	21	76916											
KCNT2	343450	broad.mit.edu	37	chr1	196227504	196227504	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcatgctttttctccGcagcaagggatggtccgact	10	13	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196227504	A	A	196227504	3	1	66	1	0	0	0	0	1	0	0	0	8162	1086	38	4	388	4	KCNT2	1	196227504	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	9920196	196227504	53023117	22	76917											
KCNT2	343450	broad.mit.edu	37	chr1	196288590	196288590	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggacactacactagttagTgtgccaaagattttgtcacc	8	10	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196288590	A	A	196288590	1	1	66	0	1	0	0	0	0	0	0	0	8162	1711	59	5		5	KCNT2	1	196288590	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	61086	196288590	52962031	23	76918											
KCNT2	343450	broad.mit.edu	37	chr1	196311383	196311383	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacaggcacacacacataCacacacacaaaaagaaaaca	3	13	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196311383	T	T	196311383	1	4	66	0	1	0	0	0	0	0	0	0	8162	493	17	4		4	KCNT2	1	196311383	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	22793	196311383	52939238	24	76919											
CFHR3	10878	broad.mit.edu	37	chr1	196759231	196759231	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaatggtgataccacctccTttctactaaaagtgtatgtg	8	9	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196759231	A	A	196759231	3	1	66	1	0	0	0	0	1	0	0	0	3316	1609	56	5	688	5	CFHR3	1	196759231	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	447848	196759231	52491390	25	76920											
PTPRC	5788	broad.mit.edu	37	chr1	198668831	198668831	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccaggcagcaatgctatctCaggtttgcgggtcctttaga	11	11	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198668831	A	A	198668831	4	1	66	1	0	0	0	0	0	1	0	0	12905	838	29	3	456	3	PTPRC	1	198668831	Nonsense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1909600	198668831	50581790	26	76921											
CACNA1S	779	broad.mit.edu	37	chr1	201038623	201038623	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttctcatggaatcagcccGgatggggtcttccgcagcca	11	12	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201038623	A	A	201038623	3	1	66	1	0	0	0	0	1	0	0	0	2573	1115	39	4	3262	4	CACNA1S	1	201038623	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2369792	201038623	48211998	27	76922											
USH2A	7399	broad.mit.edu	37	chr1	216108090	216108090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaggtttgtctcttctcCgctgtacatgacttttgtga	8	10	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216108090	T	T	216108090	3	4	66	1	0	0	0	0	1	0	0	0	17162	661	23	4	8580	4	USH2A	1	216108090	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	15069467	216108090	33142531	28	76923											
SPATA17	128153	broad.mit.edu	37	chr1	217915250	217915250	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcaaaaaaactgatttaTcatcagtgaaagaattaaaa	4	7	3	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217915250	G	G	217915250	1	3	66	0	1	0	0	0	0	0	0	0	15118	1450	50	5		5	SPATA17	1	217915250	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1807160	217915250	31335371	29	76924											
HEATR1	55127	broad.mit.edu	37	chr1	236715505	236715505	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaagctctaactttttaaaCattagttcacatgcgtttat	4	8	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236715505	G	G	236715505	1	3	66	0	1	0	0	0	0	0	0	0	7094	493	17	4		4	HEATR1	1	236715505	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	18800255	236715505	12535116	30	76925											
SDCCAG8	10806	broad.mit.edu	37	chr1	243589924	243589924	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtttggtttacacactgaaGgggaattgctgcggaataag	13	5	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243589924	C	C	243589924	1	2	66	0	1	0	0	0	0	0	0	0	14072	1015	35	4		4	SDCCAG8	1	243589924	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	6874419	243589924	5660697	31	76926											
OR2M7	391196	broad.mit.edu	37	chr1	248487030	248487030	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggattcagcatgggagtgaCgatggtgtagaatacagaca	14	5	1	3	rs143090101	byFrequency	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487030	T	T	248487030	3	4	66	1	0	0	0	0	1	0	0	0	11108	536	19	4	100	4	OR2M7	1	248487030	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	4897106	248487030	763591	32	76927											
OR2G6	391211	broad.mit.edu	37	chr1	248685778	248685778	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaagtttgtttctcttttCtataccatagtcaccccact	5	11	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248685778	G	G	248685778	3	3	66	1	0	0	0	0	1	0	0	0	11094	912	32	4	833	4	OR2G6	1	248685778	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	198748	248685778	564843	33	76928											
OR2T27	403239	broad.mit.edu	37	chr1	248813367	248813367	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtgtagaaggcagatacAgctttgtcctgctcaggggt	14	7	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248813367	G	G	248813367	2	3	66	1	0	0	0	0	0	0	0	1	11115	175	7	5		5	OR2T27	1	248813367	Silent	SNP	A	TCGA-17-Z037-01A-01W-0746-08	127589	248813367	437254	34	76929											
TTC15	51112	broad.mit.edu	37	chr2	3428399	3428399	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcagccagatctttattAcgagtactacccgcacgtgt	8	11	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3428399	C	C	3428399	3	2	66	1	0	0	0	0	1	0	0	0	16808	391	14	5	1396	5	TTC15	2	3428399	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08		3428399	239770974	35	76930											
OSR1	130497	broad.mit.edu	37	chr2	19552223	19552223	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgatgcaatgttataaAcagttgcccaagatcccctc	6	10	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19552223	G	G	19552223	1	3	66	0	1	0	0	0	0	0	0	0	11387	58	2	5		5	OSR1	2	19552223	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	16123824	19552223	223647150	36	76931											
KHK	3795	broad.mit.edu	37	chr2	27322629	27322629	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcgtgtgagagcaggtgcCggctcctcacacaccatgga	12	13	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27322629	T	T	27322629	1	4	66	0	1	0	0	0	0	0	0	0	8219	667	23	4		4	KHK	2	27322629	3'UTR	SNP	C	TCGA-17-Z037-01A-01W-0746-08	7770406	27322629	215876744	37	76932											
C2orf71	388939	broad.mit.edu	37	chr2	29296670	29296670	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggctctgtgtgcttgacGtgtgacattttgctgtcctt	12	8	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29296670	A	A	29296670	3	1	66	1	0	0	0	0	1	0	0	0	2213	1145	40	4	3416	4	C2orf71	2	29296670	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1974041	29296670	213902703	38	76933											
SLC8A1	6546	broad.mit.edu	37	chr2	40655812	40655812	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaaagtaaaaatgcctgCgtggtcatcatcaaaaatag	7	8	4	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40655812	T	T	40655812	3	4	66	1	0	0	0	0	1	0	0	0	14820	768	27	4	1460	4	SLC8A1	2	40655812	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	11359142	40655812	202543561	39	76934											
PUS10	150962	broad.mit.edu	37	chr2	61192522	61192522	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaaacagcattaacaaTtttacaccattgacgttgtt	4	9	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61192522	G	G	61192522	1	3	66	0	1	0	0	0	0	0	0	0	12939	1508	52	5		5	PUS10	2	61192522	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	20536710	61192522	182006851	40	76935											
ADD2	119	broad.mit.edu	37	chr2	70892716	70892716	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccataccaagctgctgGtcctggacctctcactgtca	8	16	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70892716	A	A	70892716	1	1	66	0	1	0	0	0	0	0	0	0	305	1276	44	4		4	ADD2	2	70892716	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	9700194	70892716	172306657	41	76936											
ALMS1	7840	broad.mit.edu	37	chr2	73799363	73799363	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctaattttttaagttcttTcaaaatctttttttctcctt	2	7	4	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73799363	C	C	73799363	1	2	66	0	1	0	0	0	0	0	0	0	535	1798	62	5		5	ALMS1	2	73799363	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	2906647	73799363	169400010	42	76937											
C2orf89	129293	broad.mit.edu	37	chr2	85058970	85058970	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggcccctgcagcccaaAgtgtccatcctgccaaccac	9	17	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85058970	C	C	85058970	1	2	66	0	1	0	0	0	0	0	0	0	2225	87	3	5		5	C2orf89	2	85058970	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	11259607	85058970	158140403	43	76938											
DPP10	57628	broad.mit.edu	37	chr2	116101372	116101372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataagataggcatctaacCtagaatttcctttattttag	6	7	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116101372	A	A	116101372	1	1	66	0	1	0	0	0	0	0	0	0	4767	696	24	2		2	DPP10	2	116101372	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	31042402	116101372	127098001	44	76939											
CNTNAP5	129684	broad.mit.edu	37	chr2	125505071	125505071	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattcaatacaaactggagCtcccccgatggtgacttttg	8	10	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125505071	G	G	125505071	1	3	66	0	1	0	0	0	0	0	0	0	3682	812	28	4		4	CNTNAP5	2	125505071	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	9403699	125505071	117694302	45	76940											
THSD7B	80731	broad.mit.edu	37	chr2	137988705	137988705	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaatggactgtgtgctgagCgagtggacggagtggtcatc	17	7	1	1	rs143921844	by1000genomes	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137988705	T	T	137988705	2	4	66	1	0	0	0	0	0	0	0	1	16003	767	27	4		4	THSD7B	2	137988705	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	12483634	137988705	105210668	46	76941											
SCN2A	6326	broad.mit.edu	37	chr2	166234059	166234059	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattattcaatttattttctAaaattataattttgggaaaa	3	2	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166234059	G	G	166234059	1	3	66	0	1	0	0	0	0	0	0	0	14029	377	13	5		5	SCN2A	2	166234059	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	28245354	166234059	76965314	47	76942											
GALNT3	2591	broad.mit.edu	37	chr2	166611208	166611208	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgattgttttctccaacatCcagacatagaggctgaccaa	7	10	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166611208	G	G	166611208	3	3	66	1	0	0	0	0	1	0	0	0	6276	855	30	4	358	4	GALNT3	2	166611208	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	377149	166611208	76588165	48	76943											
SCN9A	6335	broad.mit.edu	37	chr2	167168127	167168127	+	Frame_Shift_Del	DEL	G	-	-													ccaagtcactgcttggctttGgggcttcttcatcatcatct							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167168127	-	-	167168127	7	5	66	1	0	1	0	1	0	0	0	0	14038	1348	47	0	5897	0	SCN9A	2	167168127	Frame_Shift_Del	DEL	G	TCGA-17-Z037-01A-01W-0746-08	556919	167168127	76031246	49	76944											
XIRP2	129446	broad.mit.edu	37	chr2	168114342	168114342	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacagtaaatacgaactgcTaagtgttctttttctttttg	6	6	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168114342	A	A	168114342	1	1	66	0	1	0	0	0	0	0	0	0	17557	1537	53	5		5	XIRP2	2	168114342	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	946215	168114342	75085031	50	76945											
CPO	130749	broad.mit.edu	37	chr2	207814376	207814376	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacaagagattgtggacaAgtcagtgagtccatggagcc	13	8	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207814376	C	C	207814376	3	2	66	1	0	0	0	0	1	0	0	0	3852	72	3	5	110	5	CPO	2	207814376	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	39700034	207814376	35384997	51	76946											
MAP2	4133	broad.mit.edu	37	chr2	210517880	210517880	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcagttgcaggagaaataAcaaggcattgaagaatggca	11	5	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210517880	T	T	210517880	1	4	66	0	1	0	0	0	0	0	0	0	9327	58	2	5		5	MAP2	2	210517880	5'UTR	SNP	A	TCGA-17-Z037-01A-01W-0746-08	2703504	210517880	32681493	52	76947											
XRCC5	7520	broad.mit.edu	37	chr2	217001957	217001957	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cataactatgaggtaaaaccCaaagtcttaatgttattttt	5	6	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217001957	G	G	217001957	1	3	66	0	1	0	0	0	0	0	0	0	17583	609	21	4		4	XRCC5	2	217001957	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	6484077	217001957	26197416	53	76948											
PTPRN	5798	broad.mit.edu	37	chr2	220166981	220166981	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagccttggcaccctgGccctgctgggtgctggcaac	14	15	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220166981	A	A	220166981	3	1	66	1	0	0	0	0	1	0	0	0	12915	1203	42	4	2139	4	PTPRN	2	220166981	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	3165024	220166981	23032392	54	76949											
WDR69	164781	broad.mit.edu	37	chr2	228758628	228758628	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccatagcattcaacaatccTtacgggtgtgttcatccctt	7	12	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228758628	G	G	228758628	2	3	66	1	0	0	0	0	0	0	0	1	17446	1596	56	5		5	WDR69	2	228758628	Silent	SNP	T	TCGA-17-Z037-01A-01W-0746-08	8591647	228758628	14440745	55	76950											
TRIP12	9320	broad.mit.edu	37	chr2	230724133	230724133	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtttttttgcagagctagGagaattggtcctgttgtagt	13	4	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230724133	A	A	230724133	3	1	66	1	0	0	0	0	1	0	0	0	16681	1174	41	4	5878	4	TRIP12	2	230724133	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1965505	230724133	12475240	56	76951											
COLQ	8292	broad.mit.edu	37	chr3	15516331	15516331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggatggtggcttcagttGcagactaaagagagacctgg	15	6	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15516331	T	T	15516331	1	4	66	0	1	0	0	0	0	0	0	0	3745	1334	46	3		3	COLQ	3	15516331	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08		15516331	182506099	57	76952											
KCNH8	131096	broad.mit.edu	37	chr3	19491864	19491864	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaggtaaacgcaagatgttCtaatgcaggtatcagaagtg	11	5	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19491864	A	A	19491864	1	1	66	0	1	0	0	0	0	0	0	0	8108	928	32	3		3	KCNH8	3	19491864	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	3975533	19491864	178530566	58	76953											
CMC1	152100	broad.mit.edu	37	chr3	28361235	28361235	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttaattatggaaatattaaCtttatctgaaataaatattt	3	3	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28361235	G	G	28361235	1	3	66	0	1	0	0	0	0	0	0	0	3609	580	20	4		4	CMC1	3	28361235	3'UTR	SNP	C	TCGA-17-Z037-01A-01W-0746-08	8869371	28361235	169661195	59	76954											
CTDSPL	10217	broad.mit.edu	37	chr3	38022323	38022323	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgagccgggaggacgacGtgtacagcatgctgcacaga	15	11	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38022323	A	A	38022323	3	1	66	1	0	0	0	0	1	0	0	0	4039	1145	40	4	826	4	CTDSPL	3	38022323	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	9661088	38022323	160000107	60	76955											
SMARCC1	6599	broad.mit.edu	37	chr3	47755852	47755852	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacagagtgagacgccatctCaaaaaaaattttaaaaagat	7	6	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47755852	G	G	47755852	1	3	66	0	1	0	0	0	0	0	0	0	14889	841	29	4		4	SMARCC1	3	47755852	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	9733529	47755852	150266578	61	76956											
CDC25A	993	broad.mit.edu	37	chr3	48209267	48209267	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaccctggggagggagacAggctgagtgggattctaaat	15	8	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48209267	T	T	48209267	1	4	66	0	1	0	0	0	0	0	0	0	3092	203	7	5		5	CDC25A	3	48209267	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	453415	48209267	149813163	62	76957											
COL7A1	1294	broad.mit.edu	37	chr3	48617341	48617341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggggctccagggatccGcggaggtttcagagggacag	19	8	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48617341	A	A	48617341	1	1	66	0	1	0	0	0	0	0	0	0	3736	1102	38	4		4	COL7A1	3	48617341	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	408074	48617341	149405089	63	76958											
DOCK3	1795	broad.mit.edu	37	chr3	51370723	51370723	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcccctcttcccttgtcaGgatactctctctggcaaggg	9	15	4	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51370723	C	C	51370723	1	2	66	0	1	0	0	0	0	0	0	0	4728	1015	35	4		4	DOCK3	3	51370723	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2753382	51370723	146651707	64	76959											
ITIH3	3699	broad.mit.edu	37	chr3	52839959	52839959	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagctctccgggatgggcaGatggacaatgtgccctgagg	15	10	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52839959	A	A	52839959	1	1	66	0	1	0	0	0	0	0	0	0	7975	957	33	4		4	ITIH3	3	52839959	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1469236	52839959	145182471	65	76960											
MAGI1	9223	broad.mit.edu	37	chr3	65415696	65415696	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatcaaaaggcaatggatAacctcggcagagttcaaggt	12	7	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65415696	C	C	65415696	3	2	66	1	0	0	0	0	1	0	0	0	9282	362	13	5	3004	5	MAGI1	3	65415696	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	12575737	65415696	132606734	66	76961											
TMF1	7110	broad.mit.edu	37	chr3	69077365	69077365	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctaagagctgagtggtcacGaagagaaataccttttcttt	9	8	2	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69077365	A	A	69077365	1	1	66	0	1	0	0	0	0	0	0	0	16351	1073	37	4		4	TMF1	3	69077365	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	3661669	69077365	128945065	67	76962											
EPHA3	2042	broad.mit.edu	37	chr3	89499217	89499217	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactaaaaatgagaagttttCccacttacctttaaaataag	4	7	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89499217	T	T	89499217	1	4	66	0	1	0	0	0	0	0	0	0	5210	870	30	4		4	EPHA3	3	89499217	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	20421852	89499217	108523213	68	76963											
CBLB	868	broad.mit.edu	37	chr3	105456067	105456067	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcacataatccagttaaaTcaggattataactcctccca	4	11	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105456067	C	C	105456067	3	2	66	1	0	0	0	0	1	0	0	0	2727	1435	50	5	1977	5	CBLB	3	105456067	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	15956850	105456067	92566363	69	76964											
DZIP3	9666	broad.mit.edu	37	chr3	108393090	108393090	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttagcaagtgtctccacgGttgaatataatctgtgatgt	10	6	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108393090	C	C	108393090	1	2	66	0	1	0	0	0	0	0	0	0	4905	1276	44	4		4	DZIP3	3	108393090	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2937023	108393090	89629340	70	76965											
GRAMD1C	54762	broad.mit.edu	37	chr3	113634553	113634553	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtttttccagaaaatGttcctgagaaagatcttcat	6	7	3	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113634553	A	A	113634553	3	1	66	1	0	0	0	0	1	0	0	0	6815	1377	48	4	996	4	GRAMD1C	3	113634553	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	5241463	113634553	84387877	71	76966											
C3orf27	23434	broad.mit.edu	37	chr3	128292393	128292393	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aactcggtccccagacccccGagtgtctctggtgccagaga	11	15	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128292393	A	A	128292393	2	1	66	1	0	0	0	0	0	0	0	1	2241	1045	37	4		4	C3orf27	3	128292393	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	14657840	128292393	69730037	72	76967											
PIK3R4	30849	broad.mit.edu	37	chr3	130424394	130424394	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactacaactacttatcaacGgaacttttaccaggtggtgg	9	9	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130424394	C	C	130424394	1	2	66	0	1	0	0	0	0	0	0	0	12016	1131	39	4		4	PIK3R4	3	130424394	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2132001	130424394	67598036	73	76968											
NEK11	79858	broad.mit.edu	37	chr3	131068579	131068579	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttgaagagcagttgctgAtcacgatgggaaaagaacct	11	7	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131068579	T	T	131068579	3	4	66	1	0	0	0	0	1	0	0	0	10418	346	12	5	1977	5	NEK11	3	131068579	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	644185	131068579	66953851	74	76969											
RAB6B	51560	broad.mit.edu	37	chr3	133558368	133558368	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcttatcagccaggtccGtcttgttgcccaccagcatg	8	15	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133558368	A	A	133558368	3	1	66	1	0	0	0	0	1	0	0	0	13060	1145	40	4	259	4	RAB6B	3	133558368	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2489789	133558368	64464062	75	76970											
DZIP1L	199221	broad.mit.edu	37	chr3	137800545	137800545	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagagacaatagtcaagaCtgctacacactgccctgtgt	9	12	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137800545	G	G	137800545	1	3	66	0	1	0	0	0	0	0	0	0	4904	580	20	4		4	DZIP1L	3	137800545	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	4242177	137800545	60221885	76	76971											
CP	1356	broad.mit.edu	37	chr3	148925350	148925350	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtaccattttactctgTcttcagcacacatggagagt	8	9	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148925350	A	A	148925350	3	1	66	1	0	0	0	0	1	0	0	0	3819	1667	58	5	2421	5	CP	3	148925350	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	11124805	148925350	49097080	77	76972											
CCDC39	339829	broad.mit.edu	37	chr3	180377345	180377345	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaatcttacgaaaatcTtgtgctgctttatccaattc	5	8	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180377345	G	G	180377345	3	3	66	1	0	0	0	0	1	0	0	0	2838	1606	56	5	2252	5	CCDC39	3	180377345	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	31451995	180377345	17645085	78	76973											
ZNF595	152687	broad.mit.edu	37	chr4	59889	59889	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattctacttagcatagtAatagattggtcattggagta	8	4	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59889	G	G	59889	1	3	66	0	1	0	0	0	0	0	0	0	18152	377	13	5		5	ZNF595	4	59889	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08		59889	191094387	79	76974											
ZNF595	152687	broad.mit.edu	37	chr4	63577	63577	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagtagctgggattacaggCgcgcaccaccatgcctggct	13	13	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63577	T	T	63577	1	4	66	0	1	0	0	0	0	0	0	0	18152	783	27	4		4	ZNF595	4	63577	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	3688	63577	191090699	80	76975											
EVC2	132884	broad.mit.edu	37	chr4	5617376	5617376	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagtttctgcagctcccaGaactgcaaaactctgcctta	7	12	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5617376	T	T	5617376	1	4	66	0	1	0	0	0	0	0	0	0	5328	957	33	3		3	EVC2	4	5617376	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	5553799	5617376	185536900	81	76976											
ACOX3	8310	broad.mit.edu	37	chr4	8414842	8414842	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcatccatctgtggcccAtctcactgcacccctgcgcc	9	18	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8414842	G	G	8414842	1	3	66	0	1	0	0	0	0	0	0	0	160	232	8	5		5	ACOX3	4	8414842	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	2797466	8414842	182739434	82	76977											
SOD3	6649	broad.mit.edu	37	chr4	24801235	24801235	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcggagcccaactctgactCggcggagtggatccgagaca	15	12	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24801235	A	A	24801235	4	1	66	1	0	0	0	0	0	1	0	0	15036	893	31	3	94	3	SOD3	4	24801235	Nonsense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	16386393	24801235	166353041	83	76978											
PDGFRA	5156	broad.mit.edu	37	chr4	54953956	54953956	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccacaaagccctgtgctgGtctacagaccattcactgtt	7	14	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54953956	C	C	54953956	1	2	66	0	1	0	0	0	0	0	0	0	11755	1276	44	4		4	PDGFRA	4	54953956	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	30152721	54953956	136200320	84	76979											
CENPC1	1060	broad.mit.edu	37	chr4	68374581	68374581	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagtctgcctcatcactttCcaatggctcactcagcgaac	6	15	5	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68374581	A	A	68374581	4	1	66	1	0	0	0	0	0	1	0	0	3259	864	30	3	1016	3	CENPC1	4	68374581	Nonsense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	13420625	68374581	122779695	85	76980											
STAP1	26228	broad.mit.edu	37	chr4	68424375	68424375	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgtgtgtgtgtgtgtgCgtctgtgtgtgtgtgtgtcc	18	4	1	0	rs112784342		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68424375	T	T	68424375	1	4	66	0	1	0	0	0	0	0	0	0	15370	783	27	4		4	STAP1	4	68424375	5'Flank	SNP	C	TCGA-17-Z037-01A-01W-0746-08	49794	68424375	122729901	86	76981											
NHEDC1	150159	broad.mit.edu	37	chr4	103822564	103822568	+	Intron	DEL	TAAAA	-	-													tataatgtaaatggctctgtTaaaataaacaaaatctagta							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103822568	-	-	103822564	6	5	66	0	1	1	0	1	0	0	0	0	10495	1769	61	0		0	NHEDC1	4	103822564	Intron	DEL	TAAAA	TCGA-17-Z037-01A-01W-0746-08	35398189	103822564	87331712	87	76982											
ANK2	287	broad.mit.edu	37	chr4	114269605	114269605	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaattttacttaacctctCtaagcctctgttttctcatc	2	13	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114269605	G	G	114269605	1	3	66	0	1	0	0	0	0	0	0	0	621	928	32	4		4	ANK2	4	114269605	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	10447041	114269605	76884671	88	76983											
KIAA1109	84162	broad.mit.edu	37	chr4	123192465	123192465	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactgatattaaacttagcAgatatacagccggatctgct	8	8	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123192465	T	T	123192465	4	4	66	1	0	0	0	0	0	1	0	0	8278	180	7	5	7964	5	KIAA1109	4	123192465	Nonsense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	8922860	123192465	67961811	89	76984											
PRSS48	345062	broad.mit.edu	37	chr4	152198383	152198383	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggggatctcaggtgagcGccagggtggggttgagaagg	21	6	1	2	rs5023858		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152198383	A	A	152198383	1	1	66	0	1	0	0	0	0	0	0	0	12736	1102	38	4		4	PRSS48	4	152198383	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	29005918	152198383	38955893	90	76985											
FBXW7	55294	broad.mit.edu	37	chr4	153249384	153249384	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcatgaagatgcatacaaCgcacagtggaagtatgccca	9	9	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153249384	T	T	153249384	3	4	66	1	0	0	0	0	1	0	0	0	5826	536	19	4	745	4	FBXW7	4	153249384	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1051001	153249384	37904892	91	76986											
KIAA0922	23240	broad.mit.edu	37	chr4	154519861	154519861	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgatttaaggtgcccgagtCcacgctgatggactgccgta	12	12	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154519861	T	T	154519861	3	4	66	1	0	0	0	0	1	0	0	0	8271	855	30	4	2325	4	KIAA0922	4	154519861	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1270477	154519861	36634415	92	76987											
PLRG1	5356	broad.mit.edu	37	chr4	155461271	155461271	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatctcaagaagataactgGatcaattcaaggctgaaaat	7	6	3	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155461271	T	T	155461271	1	4	66	0	1	0	0	0	0	0	0	0	12201	1189	41	3		3	PLRG1	4	155461271	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	941410	155461271	35693005	93	76988											
PDGFC	56034	broad.mit.edu	37	chr4	157684170	157684170	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagattaaggatggagataaCgcatacgttctctaatagaa	10	5	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157684170	T	T	157684170	1	4	66	0	1	0	0	0	0	0	0	0	11753	551	19	4		4	PDGFC	4	157684170	3'UTR	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2222899	157684170	33470106	94	76989											
GRIA2	2891	broad.mit.edu	37	chr4	158282246	158282246	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggtggtacgacaaaggAgagtgcggcagcgggggagg	20	5	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158282246	G	G	158282246	2	3	66	1	0	0	0	0	0	0	0	1	6834	291	11	5		5	GRIA2	4	158282246	Silent	SNP	A	TCGA-17-Z037-01A-01W-0746-08	598076	158282246	32872030	95	76990											
NEIL3	55247	broad.mit.edu	37	chr4	178260967	178260967	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacagatgaacagatccatCacctcatgaaaatgatacgt	6	9	2	5			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178260967	T	T	178260967	3	4	66	1	0	0	0	0	1	0	0	0	10415	826	29	4	676	4	NEIL3	4	178260967	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	19978721	178260967	12893309	96	76991											
SDHA	6389	broad.mit.edu	37	chr5	236581	236581	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggatcagattgtgccCggcctgtacgcctgtgggga	16	11	1	1	rs144473374		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236581	T	T	236581	2	4	66	1	0	0	0	0	0	0	0	1	14076	639	23	4		4	SDHA	5	236581	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08		236581	180678679	97	76992											
SEMA5A	9037	broad.mit.edu	37	chr5	9388828	9388828	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaccatcctggctaacacAgtgaaaccccatctctacta	5	14	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9388828	G	G	9388828	1	3	66	0	1	0	0	0	0	0	0	0	14150	203	7	5		5	SEMA5A	5	9388828	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	9152247	9388828	171526432	98	76993											
MARCH11	441061	broad.mit.edu	37	chr5	16178006	16178006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccctaaaaagaaaacagCtcagtgtgaatatctgtgtc	7	9	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16178006	T	T	16178006	1	4	66	0	1	0	0	0	0	0	0	0	9392	812	28	4		4	MARCH11	5	16178006	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	6789178	16178006	164737254	99	76994											
MYO10	4651	broad.mit.edu	37	chr5	16699587	16699587	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagaaagctgtggaaataCggcagagtgacacagctgta	12	7	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16699587	T	T	16699587	2	4	66	1	0	0	0	0	0	0	0	1	10156	523	19	4		4	MYO10	5	16699587	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	521581	16699587	164215673	100	76995											
CDH10	1008	broad.mit.edu	37	chr5	24593560	24593560	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaatgtggcaggcataCccagaatagaaacagtagca	11	8	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24593560	G	G	24593560	3	3	66	1	0	0	0	0	1	0	0	0	3126	507	18	4	2370	4	CDH10	5	24593560	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	7893973	24593560	156321700	101	76996											
RXFP3	51289	broad.mit.edu	37	chr5	33937262	33937262	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccctgcccttctgggcGgtggagaacgctcttgactt	11	14	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33937262	A	A	33937262	2	1	66	1	0	0	0	0	0	0	0	1	13872	1103	39	4		4	RXFP3	5	33937262	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	9343702	33937262	146977998	102	76997											
BRIX1	55299	broad.mit.edu	37	chr5	34924964	34924964	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattaaagatcatagaagaaGatgctgctcttgtagaaata	8	4	2	5			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34924964	C	C	34924964	3	2	66	1	0	0	0	0	1	0	0	0	1524	942	33	4	710	4	BRIX1	5	34924964	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	987702	34924964	145990296	103	76998											
CARD6	84674	broad.mit.edu	37	chr5	40853691	40853691	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaaagcctcctgggttAtgggccgcccctttgggtca	12	13	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853691	T	T	40853691	3	4	66	1	0	0	0	0	1	0	0	0	2676	449	16	5	2267	5	CARD6	5	40853691	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	5928727	40853691	140061569	104	76999											
CMYA5	202333	broad.mit.edu	37	chr5	79086882	79086882	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagctttggtgagaggagaCggctgacggagtaagtagaa	16	5	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79086882	T	T	79086882	3	4	66	1	0	0	0	0	1	0	0	0	3622	527	19	4	11821	4	CMYA5	5	79086882	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	38233191	79086882	101828378	105	77000											
APC	324	broad.mit.edu	37	chr5	112175752	112175752	+	Frame_Shift_Del	DEL	T	-	-													gttcttccagatgctgatacTttattacattttgccacgga							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112175752	-	-	112175752	7	5	66	1	0	1	0	1	0	0	0	0	765	1596	56	0	4519	0	APC	5	112175752	Frame_Shift_Del	DEL	T	TCGA-17-Z037-01A-01W-0746-08	33088870	112175752	68739508	106	77001											
KCNN2	3781	broad.mit.edu	37	chr5	113740622	113740622	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaagtaagaaaaaaaaaaTtttagacttgagacgtgtag	8	4	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113740622	A	A	113740622	1	1	66	0	1	0	0	0	0	0	0	0	8149	1508	52	5		5	KCNN2	5	113740622	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1564870	113740622	67174638	107	77002											
PCDHB11	56125	broad.mit.edu	37	chr5	140581715	140581715	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgaagaaaactccacctttCgaaatagctttggatttaat	7	7	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140581715	T	T	140581715	4	4	66	1	0	0	0	0	0	1	0	0	11630	876	31	4	2370	4	PCDHB11	5	140581715	Nonsense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	26841093	140581715	40333545	108	77003											
FAT2	2196	broad.mit.edu	37	chr5	150905367	150905367	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattcctgagccctcctgcTtaggccctcagcagtcacca	7	18	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150905367	C	C	150905367	3	2	66	1	0	0	0	0	1	0	0	0	5747	1609	56	5	2609	5	FAT2	5	150905367	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	10323652	150905367	30009893	109	77004											
GLRA1	2741	broad.mit.edu	37	chr5	151228529	151228529	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgagaaagtccaggcCatgtatgtctggatcgatgg	15	7	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151228529	T	T	151228529	1	4	66	0	1	0	0	0	0	0	0	0	6518	609	21	4		4	GLRA1	5	151228529	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	323162	151228529	29686731	110	77005											
NMUR2	56923	broad.mit.edu	37	chr5	151784112	151784112	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattggggaagtagtggaacTtgatgccatggatgctggtg	16	5	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151784112	A	A	151784112	3	1	66	1	0	0	0	0	1	0	0	0	10602	1609	56	5	700	5	NMUR2	5	151784112	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	555583	151784112	29131148	111	77006											
LARP1	23367	broad.mit.edu	37	chr5	154185633	154185633	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagatgagcctctgggcccgTtatttagacccagagtataa	11	9	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154185633	G	G	154185633	1	3	66	0	1	0	0	0	0	0	0	0	8700	1740	60	5		5	LARP1	5	154185633	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	2401521	154185633	26729627	112	77007											
TIMD4	91937	broad.mit.edu	37	chr5	156378412	156378412	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctagcagactaatataCgcatgtgtacacgcacacac	8	12	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156378412	T	T	156378412	1	4	66	0	1	0	0	0	0	0	0	0	16026	551	19	4		4	TIMD4	5	156378412	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2192779	156378412	24536848	113	77008											
DOCK2	1794	broad.mit.edu	37	chr5	169396403	169396403	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttgcagtgagccgagatCacgccactgcactccagcct	10	14	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169396403	G	G	169396403	1	3	66	0	1	0	0	0	0	0	0	0	4727	841	29	4		4	DOCK2	5	169396403	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	13017991	169396403	11518857	114	77009											
DUSP22	56940	broad.mit.edu	37	chr6	350652	350652	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagctaaaacaatttgccaAtaaagtacatgtttttccta	4	8	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	350652	G	G	350652	1	3	66	0	1	0	0	0	0	0	0	0	4861	116	4	5		5	DUSP22	6	350652	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08		350652	170764415	115	77010											
PRPF4B	8899	broad.mit.edu	37	chr6	4058922	4058922	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattgttagtaggcctgtttCataatagttcaaaacccaag	7	7	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4058922	A	A	4058922	1	1	66	0	1	0	0	0	0	0	0	0	12679	841	29	3		3	PRPF4B	6	4058922	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	3708270	4058922	167056145	116	77011											
F13A1	2162	broad.mit.edu	37	chr6	6305708	6305708	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcatacttgtcagtgtgGtggtccaccttgttagtgtc	10	8	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6305708	A	A	6305708	2	1	66	1	0	0	0	0	0	0	0	1	5383	1252	44	4		4	F13A1	6	6305708	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2246786	6305708	164809359	117	77012											
DSP	1832	broad.mit.edu	37	chr6	7583731	7583731	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagctcgggacctcattgActtcgatgaccgtcagcaga	10	12	2	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7583731	C	C	7583731	3	2	66	1	0	0	0	0	1	0	0	0	4821	275	10	5	6330	5	DSP	6	7583731	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	1278023	7583731	163531336	118	77013											
ABT1	29777	broad.mit.edu	37	chr6	26598968	26598968	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgggcagacattttactGtgtttctcagaccaagtgtc	9	11	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26598968	T	T	26598968	1	4	66	0	1	0	0	0	0	0	0	0	101	1392	48	3		3	ABT1	6	26598968	3'UTR	SNP	G	TCGA-17-Z037-01A-01W-0746-08	19015237	26598968	144516099	119	77014											
C4A	720	broad.mit.edu	37	chr6	31997026	31997026	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccacgcagctgccatcaCggcctatgccctgacactga	9	17	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31997026	T	T	31997026	3	4	66	1	0	0	0	0	1	0	0	0	2270	536	19	4		4	C4A	6	31997026	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	5398058	31997026	139118041	120	77015											
PPT2	9374	broad.mit.edu	37	chr6	32130686	32130686	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacagcctggcactccaacCgtaccctttatgagacctgc	7	16	0	1	rs144778647	by1000genomes	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32130686	T	T	32130686	3	4	66	1	0	0	0	0	1	0	0	0	12513	652	23	4	920	4	PPT2	6	32130686	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	133660	32130686	138984381	121	77016											
XPO5	57510	broad.mit.edu	37	chr6	43506604	43506604	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtctgctgcacagagacTctggtgtgggtcttgacgag	16	8	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43506604	C	C	43506604	1	2	66	0	1	0	0	0	0	0	0	0	17574	1566	54	5		5	XPO5	6	43506604	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	11375918	43506604	127608463	122	77017											
GSTA3	2940	broad.mit.edu	37	chr6	52770442	52770442	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggatgcttttatttgaggCcaaaatattcacaggtcatc	10	7	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52770442	T	T	52770442	1	4	66	0	1	0	0	0	0	0	0	0	6898	754	26	4		4	GSTA3	6	52770442	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	9263838	52770442	118344625	123	77018											
MYO6	4646	broad.mit.edu	37	chr6	76527431	76527432	+	Intron	INS	-	T	T													atttctttcaaaaataggtgINSttttttttcacaagagtaag							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76527432	T	T	76527431	6	5	66	0	1	1	1	0	0	0	0	0	10175	1392	48	0		0	MYO6	6	76527431	Intron	INS	-	TCGA-17-Z037-01A-01W-0746-08	23756989	76527431	94587636	124	77019											
TTK	7272	broad.mit.edu	37	chr6	80750407	80750407	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattctcctaactccatttTgaaagctgctaaagtaagta	6	8	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80750407	G	G	80750407	3	3	66	1	0	0	0	0	1	0	0	0	16846	1821	63	5	2555	5	TTK	6	80750407	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	4222976	80750407	90364660	125	77020											
PRSS35	167681	broad.mit.edu	37	chr6	84233872	84233872	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagaaaaaaatctggcCggggtcagaggattgccgaa	14	6	2	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84233872	T	T	84233872	3	4	66	1	0	0	0	0	1	0	0	0	12730	643	23	4	714	4	PRSS35	6	84233872	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	3483465	84233872	86881195	126	77021											
MDN1	23195	broad.mit.edu	37	chr6	90455080	90455080	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcatgccctcagtccacaCgatatggccaaagttacact	7	15	1	0	rs114853466	by1000genomes	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90455080	T	T	90455080	3	4	66	1	0	0	0	0	1	0	0	0	9508	536	19	4	12996	4	MDN1	6	90455080	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	6221208	90455080	80659987	127	77022											
C6orf167	253714	broad.mit.edu	37	chr6	97634528	97634528	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacaaataggtccacattgTccctttgaagttcctgacac	7	11	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97634528	C	C	97634528	3	2	66	1	0	0	0	0	1	0	0	0	2365	1667	58	5	1697	5	C6orf167	6	97634528	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	7179448	97634528	73480539	128	77023											
SIM1	6492	broad.mit.edu	37	chr6	100841682	100841682	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggcggggtccagaagctgCggagaggccgtgtcggtcaa	18	10	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100841682	T	T	100841682	2	4	66	1	0	0	0	0	0	0	0	1	14436	755	27	4		4	SIM1	6	100841682	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	3207154	100841682	70273385	129	77024											
NKAIN2	154215	broad.mit.edu	37	chr6	124216351	124216351	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctcacacagacacacaCacacacacacaagaacacac	2	18	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124216351	T	T	124216351	1	4	66	0	1	0	0	0	0	0	0	0	10531	493	17	4		4	NKAIN2	6	124216351	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	23374669	124216351	46898716	130	77025											
ENPP3	5169	broad.mit.edu	37	chr6	132032331	132032331	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcacccacaggcctcacaGgcccatgttgtcccccacca	9	19	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132032331	A	A	132032331	1	1	66	0	1	0	0	0	0	0	0	0	5173	1015	35	4		4	ENPP3	6	132032331	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	7815980	132032331	39082736	131	77026											
MTHFD1L	25902	broad.mit.edu	37	chr6	151209072	151209072	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttccagagaaaagggtcCatgacaatgagcatccagtg	11	9	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151209072	T	T	151209072	2	4	66	1	0	0	0	0	0	0	0	1	10022	581	21	4		4	MTHFD1L	6	151209072	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	19176741	151209072	19905995	132	77027											
C6orf97	80129	broad.mit.edu	37	chr6	151859418	151859418	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaagaagaaagttgtagAgttaaatgaaaaattacagt	8	1	0	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151859418	G	G	151859418	3	3	66	1	0	0	0	0	1	0	0	0	2399	304	11	5	435	5	C6orf97	6	151859418	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	650346	151859418	19255649	133	77028											
SYNE1	23345	broad.mit.edu	37	chr6	152464947	152464947	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggacaaactatttgactTatttaaagcttgatattcaa	5	6	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152464947	C	C	152464947	1	2	66	0	1	0	0	0	0	0	0	0	15564	1769	61	5		5	SYNE1	6	152464947	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	605529	152464947	18650120	134	77029											
SYNE1	23345	broad.mit.edu	37	chr6	152718022	152718022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcttgaatgctactgaCaatttgtttagacaaatgtg	8	5	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152718022	A	A	152718022	3	1	66	1	0	0	0	0	1	0	0	0	15564	478	17	3	19410	3	SYNE1	6	152718022	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	253075	152718022	18397045	135	77030											
LPA	4018	broad.mit.edu	37	chr6	161055880	161055880	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaataaaaattttggctaaGacactgagatagcccatttt	6	7	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161055880	A	A	161055880	1	1	66	0	1	0	0	0	0	0	0	0	8990	957	33	4		4	LPA	6	161055880	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	8337858	161055880	10059187	136	77031											
PARK2	5071	broad.mit.edu	37	chr6	162535059	162535059	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagatcagatagttgtagAtatgtggcattatttctgag	10	4	2	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162535059	G	G	162535059	1	3	66	0	1	0	0	0	0	0	0	0	11543	348	12	5		5	PARK2	6	162535059	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	1479179	162535059	8580008	137	77032											
PDCD2	5134	broad.mit.edu	37	chr6	170892657	170892657	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgatgctccttgctgcaGtaatatgctttgtggcatct	10	9	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170892657	T	T	170892657	4	4	66	1	0	0	0	0	0	1	0	0	11713	1024	36	3	621	3	PDCD2	6	170892657	Nonsense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	8357598	170892657	222410	138	77033											
SDK1	221935	broad.mit.edu	37	chr7	4119228	4119228	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggcaggtacgtgtgtcGttagactgggagctggcatt	18	6	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4119228	A	A	4119228	1	1	66	0	1	0	0	0	0	0	0	0	14081	1160	40	4		4	SDK1	7	4119228	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08		4119228	155019435	139	77034											
DNAH11	8701	broad.mit.edu	37	chr7	21737769	21737769	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaggttttgtggatgcgCgtgcattagcccgaaagttc	13	8	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21737769	T	T	21737769	3	4	66	1	0	0	0	0	1	0	0	0	4639	768	27	4	6282	4	DNAH11	7	21737769	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	17618541	21737769	137400894	140	77035											
DNAH11	8701	broad.mit.edu	37	chr7	21882362	21882362	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggccagatttggagaaacTtaaggtaaaaatgtttacgt	10	4	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21882362	G	G	21882362	3	3	66	1	0	0	0	0	1	0	0	0	4639	1609	56	5	11176	5	DNAH11	7	21882362	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	144593	21882362	137256301	141	77036											
C7orf10	79783	broad.mit.edu	37	chr7	40193541	40193541	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctatgggagatgagttgCgtctgtgtacacctacaaca	11	9	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40193541	T	T	40193541	1	4	66	0	1	0	0	0	0	0	0	0	2401	783	27	4		4	C7orf10	7	40193541	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	18311179	40193541	118945122	142	77037											
GCK	2645	broad.mit.edu	37	chr7	44191860	44191860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccctgccccggcccctgCgctgctcaccatctcagcag	9	22	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44191860	T	T	44191860	1	4	66	0	1	0	0	0	0	0	0	0	6355	783	27	4		4	GCK	7	44191860	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	3998319	44191860	114946803	143	77038											
PCLO	27445	broad.mit.edu	37	chr7	82582407	82582407	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtcacaggaggaactacaGaaaacacaggttcaacagaa	9	9	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82582407	A	A	82582407	3	1	66	1	0	0	0	0	1	0	0	0	11677	942	33	4	7667	4	PCLO	7	82582407	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	38390547	82582407	76556256	144	77039											
SEMA3A	10371	broad.mit.edu	37	chr7	83640399	83640399	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctttaaagttcattaggaAtacatcctctgtttaaaaac	4	7	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83640399	G	G	83640399	3	3	66	1	0	0	0	0	1	0	0	0	14137	101	4	5	1417	5	SEMA3A	7	83640399	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	1057992	83640399	75498264	145	77040											
DLX5	1749	broad.mit.edu	37	chr7	96653608	96653608	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggtggcgcttgggacgcGgttgtaggcgccgccgtact	18	10	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96653608	A	A	96653608	3	1	66	1	0	0	0	0	1	0	0	0	4614	1116	39	4	553	4	DLX5	7	96653608	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	13013209	96653608	62485055	146	77041											
TRRAP	8295	broad.mit.edu	37	chr7	98508110	98508110	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagttttattcaagttaacTtaatatactttctcttttcc	3	7	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98508110	G	G	98508110	1	3	66	0	1	0	0	0	0	0	0	0	16726	1624	56	5		5	TRRAP	7	98508110	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1854502	98508110	60630553	147	77042											
SMURF1	57154	broad.mit.edu	37	chr7	98633052	98633052	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctagcacacatctcagAaaaacatcccagccaccttc	3	15	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98633052	G	G	98633052	1	3	66	0	1	0	0	0	0	0	0	0	14933	261	9	5		5	SMURF1	7	98633052	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	124942	98633052	60505611	148	77043											
ACHE	43	broad.mit.edu	37	chr7	100490136	100490136	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtgttcaaagacgtaggCgtagacccgggcaccctggg	15	11	1	2	rs148991713	byFrequency	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100490136	T	T	100490136	3	4	66	1	0	0	0	0	1	0	0	0	141	768	27	4	619	4	ACHE	7	100490136	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1857084	100490136	58648527	149	77044											
CDHR3	222256	broad.mit.edu	37	chr7	105656565	105656565	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaactcccttctggaggcctCgcatgctgttttgcacagtg	10	12	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105656565	T	T	105656565	1	4	66	0	1	0	0	0	0	0	0	0	3150	899	31	4		4	CDHR3	7	105656565	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	5166429	105656565	53482098	150	77045											
DLD	1738	broad.mit.edu	37	chr7	107557789	107557789	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggatgaaggcattatctGtgttgaaggaatggctggtg	16	3	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107557789	A	A	107557789	3	1	66	1	0	0	0	0	1	0	0	0	4591	1377	48	4	1160	4	DLD	7	107557789	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1901224	107557789	51580874	151	77046											
CHRM2	1129	broad.mit.edu	37	chr7	136700368	136700368	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaacatgcccagcagtgaCgatggcctggagcacaacaa	10	12	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700368	T	T	136700368	2	4	66	1	0	0	0	0	0	0	0	1	3408	535	19	4		4	CHRM2	7	136700368	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	29142579	136700368	22438295	152	77047											
MLL3	58508	broad.mit.edu	37	chr7	151970911	151970911	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtacatttctcttcacaGcatttgatagtggctccaag	9	9	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151970911	T	T	151970911	4	4	66	1	0	0	0	0	0	1	0	0	9715	963	34	3	14056	3	MLL3	7	151970911	Nonsense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	15270543	151970911	7167752	153	77048											
FDFT1	2222	broad.mit.edu	37	chr8	11667355	11667355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgctggaggacttccCaacggtgagtggggttacgc	16	10	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11667355	A	A	11667355	3	1	66	1	0	0	0	0	1	0	0	0	5859	594	21	2	387	2	FDFT1	8	11667355	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08		11667355	134696667	154	77049											
PSD3	23362	broad.mit.edu	37	chr8	18432628	18432628	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaatcaaataaaaaccaaCaaaacatactgagtttgaaa	3	7	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18432628	G	G	18432628	1	3	66	0	1	0	0	0	0	0	0	0	12754	493	17	4		4	PSD3	8	18432628	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	6765273	18432628	127931394	155	77050											
AGPAT6	137964	broad.mit.edu	37	chr8	41469812	41469812	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagagctctttccggtgCgttcttgaggcaagacttcc	12	10	2	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41469812	T	T	41469812	1	4	66	0	1	0	0	0	0	0	0	0	391	783	27	4		4	AGPAT6	8	41469812	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	23037184	41469812	104894210	156	77051											
PREX2	80243	broad.mit.edu	37	chr8	69129863	69129863	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacaggtgcaccctgagCgtgacgctggagcaagccat	13	14	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69129863	T	T	69129863	2	4	66	1	0	0	0	0	0	0	0	1	12583	767	27	4		4	PREX2	8	69129863	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	27660051	69129863	77234159	157	77052											
HEY1	23462	broad.mit.edu	37	chr8	80678712	80678712	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggggtggtgaattcactgGagaagattctatgtgcattc	13	6	2	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80678712	A	A	80678712	1	1	66	0	1	0	0	0	0	0	0	0	7145	1189	41	4		4	HEY1	8	80678712	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	11548849	80678712	65685310	158	77053			1	55		7	7	875	G		7.936357e-16
HEY1	23462	broad.mit.edu	37	chr8	80679078	80679078	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgtaaatcgtaaagcatgGactaaagcaaaatcagttgt	8	5	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679078	A	A	80679078	1	1	66	0	1	0	0	0	0	0	0	0	7145	1189	41	4		4	HEY1	8	80679078	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	366	80679078	65684944	159	77054			1	55		7	7	875	G		7.936357e-16
HEY1	23462	broad.mit.edu	37	chr8	80679205	80679205	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaagattcagaaggtgcaGatagctatgctgagagcttt	14	5	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679205	A	A	80679205	1	1	66	0	1	0	0	0	0	0	0	0	7145	957	33	4		4	HEY1	8	80679205	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	127	80679205	65684817	160	77055			1	55		7	7	875	G		7.936357e-16
HEY1	23462	broad.mit.edu	37	chr8	80679298	80679298	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctcagacaaactgttattGatccggtctcgtcggcgctt	10	11	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679298	A	A	80679298	2	1	66	1	0	0	0	0	0	0	0	1	7145	1280	45	4		4	HEY1	8	80679298	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	93	80679298	65684724	161	77056			1	55		7	7	875	G		7.936357e-16
HEY1	23462	broad.mit.edu	37	chr8	80679333	80679333	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgcttctcaattatctgcaGaaggcaagcaaaacaaagga	9	9	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679333	A	A	80679333	1	1	66	0	1	0	0	0	0	0	0	0	7145	957	33	4		4	HEY1	8	80679333	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	35	80679333	65684689	162	77057			1	55		7	7	875	G		7.936357e-16
HEY1	23462	broad.mit.edu	37	chr8	80679532	80679532	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagccgaactcaagtttctGaaaagagaaaaagaacaaac	8	7	2	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679532	A	A	80679532	1	1	66	0	1	0	0	0	0	0	0	0	7145	1305	45	4		4	HEY1	8	80679532	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	199	80679532	65684490	163	77058			1	55		7	7	875	G		7.936357e-16
HEY1	23462	broad.mit.edu	37	chr8	80679586	80679586	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccgttaaacgaggagaggtGatctgagaggtcgcccccac	14	11	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679586	A	A	80679586	1	1	66	0	1	0	0	0	0	0	0	0	7145	1305	45	4		4	HEY1	8	80679586	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	54	80679586	65684436	164	77059			1	55		7	7	875	G		7.936357e-16
RALYL	138046	broad.mit.edu	37	chr8	85591895	85591895	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctggaggtgacaatgaAgtacagagaaaaatgtgaga	15	3	0	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85591895	C	C	85591895	1	2	66	0	1	0	0	0	0	0	0	0	13128	87	3	5		5	RALYL	8	85591895	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	4912309	85591895	60772127	165	77060											
OXR1	55074	broad.mit.edu	37	chr8	107763109	107763109	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaacgtttgggaatcgTacactttctaagaaggaaga	10	5	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107763109	C	C	107763109	2	2	66	1	0	0	0	0	0	0	0	1	11428	1625	57	5		5	OXR1	8	107763109	Silent	SNP	T	TCGA-17-Z037-01A-01W-0746-08	22171214	107763109	38600913	166	77061											
TRHR	7201	broad.mit.edu	37	chr8	110099688	110099688	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcaataaaggtgggcgctgGaaagaagatgttttgagaag	15	3	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110099688	A	A	110099688	1	1	66	0	1	0	0	0	0	0	0	0	16604	1189	41	4		4	TRHR	8	110099688	5'Flank	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2336579	110099688	36264334	167	77062											
SNTB1	6641	broad.mit.edu	37	chr8	121551069	121551069	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgacatcacgttctcTggtggcattgcagcccttct	10	12	4	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121551069	A	A	121551069	1	1	66	0	1	0	0	0	0	0	0	0	14986	1595	55	5		5	SNTB1	8	121551069	3'UTR	SNP	T	TCGA-17-Z037-01A-01W-0746-08	11451381	121551069	24812953	168	77063											
FER1L6	654463	broad.mit.edu	37	chr8	124993145	124993145	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaaggtgttgtcagaaTatgtcttattccctctgaaa	8	8	3	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124993145	C	C	124993145	1	2	66	0	1	0	0	0	0	0	0	0	5872	1421	49	5		5	FER1L6	8	124993145	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	3442076	124993145	21370877	169	77064											
ADCY8	114	broad.mit.edu	37	chr8	131972382	131972382	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggagatggagaaacatggGcacatgggagggagacttgt	18	4	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131972382	A	A	131972382	1	1	66	0	1	0	0	0	0	0	0	0	300	1218	42	4		4	ADCY8	8	131972382	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	6979237	131972382	14391640	170	77065											
FREM1	158326	broad.mit.edu	37	chr9	14848754	14848754	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctttcaaagaagaagtcGtatacctccaattctacctg	5	12	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14848754	A	A	14848754	2	1	66	1	0	0	0	0	0	0	0	1	6104	1140	40	4		4	FREM1	9	14848754	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08		14848754	126364677	171	77066											
TEK	7010	broad.mit.edu	37	chr9	27229311	27229311	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgagaaaacatgcctctgCcaaaggatgtgatatataag	10	7	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27229311	T	T	27229311	1	4	66	0	1	0	0	0	0	0	0	0	15873	754	26	4		4	TEK	9	27229311	3'UTR	SNP	C	TCGA-17-Z037-01A-01W-0746-08	12380557	27229311	113984120	172	77067											
AQP7	364	broad.mit.edu	37	chr9	33395198	33395198	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagccacgggtggacctaaGacagtggcccgagcccatgg	16	12	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33395198	T	T	33395198	1	4	66	0	1	0	0	0	0	0	0	0	833	957	33	3		3	AQP7	9	33395198	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	6165887	33395198	107818233	173	77068											
FANCG	2189	broad.mit.edu	37	chr9	35076825	35076825	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accccaggctgatccctcttTcagggctgcaaccaagtaca	8	15	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35076825	A	A	35076825	4	1	66	1	0	0	0	0	0	1	0	0	5725	1792	62	5	1080	5	FANCG	9	35076825	Nonsense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1681627	35076825	106136606	174	77069											
FRMPD1	22844	broad.mit.edu	37	chr9	37746019	37746019	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggtggctcccaggataggGatggaccagtgcagctgtca	15	9	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37746019	A	A	37746019	2	1	66	1	0	0	0	0	0	0	0	1	6117	1161	41	4		4	FRMPD1	9	37746019	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2669194	37746019	103467412	175	77070											
DAPK1	1612	broad.mit.edu	37	chr9	90321154	90321154	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgtggagaccccacgggcGctgcaccactaccggggccg	14	17	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90321154	A	A	90321154	2	1	66	1	0	0	0	0	0	0	0	1	4268	1074	38	4		4	DAPK1	9	90321154	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	52575135	90321154	50892277	176	77071											
ZNF510	22869	broad.mit.edu	37	chr9	99522314	99522314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgtttaacacagttagcCttatcattaaaggcttttcc	5	8	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99522314	A	A	99522314	3	1	66	1	0	0	0	0	1	0	0	0	18081	680	24	2	1257	2	ZNF510	9	99522314	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	9201160	99522314	41691117	177	77072											
SMC2	10592	broad.mit.edu	37	chr9	106876287	106876287	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaaagcgcaggcagctgtCtcgtgatattggtagattga	14	6	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106876287	G	G	106876287	3	3	66	1	0	0	0	0	1	0	0	0	14897	913	32	4	1499	4	SMC2	9	106876287	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	7353973	106876287	34337144	178	77073											
KIAA0368	23392	broad.mit.edu	37	chr9	114124457	114124457	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgtttagattctgcatgAaaaaaaaaaaacaaaaacaa	4	6	1	2	rs3837272		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114124457	G	G	114124457	1	3	66	0	1	0	0	0	0	0	0	0	8241	261	9	5		5	KIAA0368	9	114124457	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	7248170	114124457	27088974	179	77074											
DNAJC25	548645	broad.mit.edu	37	chr9	114411887	114411887	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtccaaagaagaaattcGtgacgaggaggagaacatca	11	6	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114411887	A	A	114411887	3	1	66	1	0	0	0	0	1	0	0	0	4683	1145	40	4	654	4	DNAJC25	9	114411887	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	287430	114411887	26801544	180	77075											
ALAD	210	broad.mit.edu	37	chr9	116151291	116151291	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcatggcctccagtacGgcagccttgagatcaaatgc	11	12	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116151291	C	C	116151291	2	2	66	1	0	0	0	0	0	0	0	1	483	1103	39	4		4	ALAD	9	116151291	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1739404	116151291	25062140	181	77076											
MEGF9	1955	broad.mit.edu	37	chr9	123385114	123385114	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccccagaagggaaagaaAgcccagctcatgtaaatcat	8	11	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123385114	T	T	123385114	1	4	66	0	1	0	0	0	0	0	0	0	9557	87	3	5		5	MEGF9	9	123385114	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	7233823	123385114	17828317	182	77077											
ODF2	4957	broad.mit.edu	37	chr9	131258451	131258451	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttggtcccatctctgtcctCttcctaggacctgagacttt	7	14	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131258451	T	T	131258451	1	4	66	0	1	0	0	0	0	0	0	0	10922	928	32	4		4	ODF2	9	131258451	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	7873337	131258451	9954980	183	77078											
UCN3	114131	broad.mit.edu	37	chr10	5412280	5412280	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgtgtatatgcgtgtatGtgtgtgtatatgcgtgtgta	15	3	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5412280	A	A	5412280	1	1	66	0	1	0	0	0	0	0	0	0	17055	1392	48	4		4	UCN3	10	5412280	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08		5412280	130122467	184	77079											
C10orf68	79741	broad.mit.edu	37	chr10	33137496	33137496	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatagtcaagagtattcatgCactttttcttttaaaatttt	4	5	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33137496	T	T	33137496	1	4	66	0	1	0	0	0	0	0	0	0	1624	725	25	4		4	C10orf68	10	33137496	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	27725216	33137496	102397251	185	77080											
MYOF	26509	broad.mit.edu	37	chr10	95162103	95162103	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactttctcatgacagcatgGcctaaaatagagaaggagta	9	8	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95162103	A	A	95162103	2	1	66	1	0	0	0	0	0	0	0	1	10183	1217	42	4		4	MYOF	10	95162103	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	62024607	95162103	40372644	186	77081											
LOXL4	84171	broad.mit.edu	37	chr10	100013452	100013452	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatccgcagacttggagaGgcagttctcctcgtgggcac	14	11	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100013452	A	A	100013452	3	1	66	1	0	0	0	0	1	0	0	0	8989	1000	35	4	597	4	LOXL4	10	100013452	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	4851349	100013452	35521295	187	77082											
GBF1	8729	broad.mit.edu	37	chr10	104122221	104122221	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaagtccaattgatctgtTtactttccagaatgccttcc	5	11	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104122221	G	G	104122221	1	3	66	0	1	0	0	0	0	0	0	0	6333	1856	64	5		5	GBF1	10	104122221	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	4108769	104122221	31412526	188	77083											
PSD	5662	broad.mit.edu	37	chr10	104173681	104173681	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagctggtaccagaatcCggttcaagaggggcaagtgg	16	8	1	3	rs140240917		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104173681	T	T	104173681	2	4	66	1	0	0	0	0	0	0	0	1	12752	639	23	4		4	PSD	10	104173681	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	51460	104173681	31361066	189	77084											
C10orf119	79892	broad.mit.edu	37	chr10	121598010	121598010	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatctggctttagtgcgaagGaagtcagaaatggaagagaa	14	4	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121598010	A	A	121598010	1	1	66	0	1	0	0	0	0	0	0	0	1599	1189	41	4		4	C10orf119	10	121598010	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	17424329	121598010	13936737	190	77085											
IKZF5	64376	broad.mit.edu	37	chr10	124753876	124753876	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtttttgccatactttcaTaggagtcagtctggatattt	9	6	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124753876	C	C	124753876	3	2	66	1	0	0	0	0	1	0	0	0	7688	1406	49	5	583	5	IKZF5	10	124753876	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	3155866	124753876	10780871	191	77086											
CPXM2	119587	broad.mit.edu	37	chr10	125539747	125539747	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtggtcatctcgttcCggcggtgataataattatta	11	7	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125539747	T	T	125539747	3	4	66	1	0	0	0	0	1	0	0	0	3870	652	23	4	1388	4	CPXM2	10	125539747	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	785871	125539747	9995000	192	77087											
PTPRE	5791	broad.mit.edu	37	chr10	129861400	129861400	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatggtctgggagcaaaagTctgcgaccatcgtcatgtta	12	8	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129861400	C	C	129861400	3	2	66	1	0	0	0	0	1	0	0	0	12908	1667	58	5	748	5	PTPRE	10	129861400	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	4321653	129861400	5673347	193	77088											
TCERG1L	256536	broad.mit.edu	37	chr10	132891433	132891433	+	Frame_Shift_Del	DEL	T	-	-													tttttcacaaactcatctcaTtttccgcagccttagtctgt							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132891433	-	-	132891433	7	5	66	1	0	1	0	1	0	0	0	0	15808	1493	52	0	11	0	TCERG1L	10	132891433	Frame_Shift_Del	DEL	T	TCGA-17-Z037-01A-01W-0746-08	3030033	132891433	2643314	194	77089											
HBG2	3048	broad.mit.edu	37	chr11	5274642	5274642	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttcccaggagctgttgAgatgaaaggagacaataaag	11	6	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5274642	T	T	5274642	1	4	66	0	1	0	0	0	0	0	0	0	7049	319	11	5		5	HBG2	11	5274642	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08		5274642	129731874	195	77090											
OR51I2	390064	broad.mit.edu	37	chr11	5475386	5475386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctatgtgctcattctgcGttctgtcatggccactgctt	8	13	4	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5475386	A	A	5475386	3	1	66	1	0	0	0	0	1	0	0	0	11195	1145	40	4	670	4	OR51I2	11	5475386	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	200744	5475386	129531130	196	77091											
OR52B2	255725	broad.mit.edu	37	chr11	6191530	6191530	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggacaaaaactgcaggatgGaagatggtaacattggtgtg	14	4	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6191530	A	A	6191530	2	1	66	1	0	0	0	0	0	0	0	1	11205	1165	41	4		4	OR52B2	11	6191530	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	716144	6191530	128814986	197	77092											
TRIM3	10612	broad.mit.edu	37	chr11	6477334	6477334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgctgtctgctaccaCgatgcggccgctgctggctg	14	12	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6477334	T	T	6477334	3	4	66	1	0	0	0	0	1	0	0	0	16628	536	19	4	757	4	TRIM3	11	6477334	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	285804	6477334	128529182	198	77093											
ABCC8	6833	broad.mit.edu	37	chr11	17464266	17464266	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtgtggggtgaactcaCtggagatggaggtatagatg	18	4	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17464266	T	T	17464266	5	4	66	1	0	0	0	0	0	0	1	0	58	579	20	4	3234	4	ABCC8	11	17464266	Splice_Site	SNP	C	TCGA-17-Z037-01A-01W-0746-08	10986932	17464266	117542250	199	77094											
ANO5	203859	broad.mit.edu	37	chr11	22248895	22248895	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagatccatgccccttgGgaggtattagttacctatgc	10	10	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22248895	C	C	22248895	3	2	66	1	0	0	0	0	1	0	0	0	700	1241	43	4	437	4	ANO5	11	22248895	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	4784629	22248895	112757621	200	77095											
OR4C15	81309	broad.mit.edu	37	chr11	55322168	55322168	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgcgtgcttctcatctgTcatcaccccaaagatgattg	9	11	4	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55322168	C	C	55322168	3	2	66	1	0	0	0	0	1	0	0	0	11142	1667	58	5	388	5	OR4C15	11	55322168	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	33073273	55322168	79684348	201	77096											
P2RX3	5024	broad.mit.edu	37	chr11	57136813	57136813	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcacccctcggagcccGccctgcctctcctcctccag	9	22	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57136813	A	A	57136813	1	1	66	0	1	0	0	0	0	0	0	0	11435	1102	38	4		4	P2RX3	11	57136813	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1814645	57136813	77869703	202	77097											
GRM5	2915	broad.mit.edu	37	chr11	88781047	88781047	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagaaggaccattttaggAaaggagttcaagccaataaa	9	6	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88781047	T	T	88781047	1	4	66	0	1	0	0	0	0	0	0	0	6866	261	9	5		5	GRM5	11	88781047	5'UTR	SNP	A	TCGA-17-Z037-01A-01W-0746-08	31644234	88781047	46225469	203	77098											
NAALAD2	10003	broad.mit.edu	37	chr11	89896721	89896721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctggagacctagaagaaCtatcatttttgccagctggg	12	8	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89896721	A	A	89896721	3	1	66	1	0	0	0	0	1	0	0	0	10222	565	20	3	1256	3	NAALAD2	11	89896721	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1115674	89896721	45109795	204	77099											
FAT3	120114	broad.mit.edu	37	chr11	92534203	92534203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgaaaaatacagtgctttCgttctttgtcaaagcagtag	9	7	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92534203	T	T	92534203	3	4	66	1	0	0	0	0	1	0	0	0	5748	893	31	4	8058	4	FAT3	11	92534203	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2637482	92534203	42472313	205	77100											
DDI1	414301	broad.mit.edu	37	chr11	103907536	103907536	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctctgctagcccggcccGcccgggcccccgccatgctg	12	22	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103907536	T	T	103907536	1	4	66	0	1	0	0	0	0	0	0	0	4361	1102	38	3		3	DDI1	11	103907536	5'UTR	SNP	G	TCGA-17-Z037-01A-01W-0746-08	11373333	103907536	31098980	206	77101											
GRAMD1B	57476	broad.mit.edu	37	chr11	123483367	123483367	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaacttgtaaagtttagtaCaaatgtgaagcggatctggc	10	5	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123483367	G	G	123483367	1	3	66	0	1	0	0	0	0	0	0	0	6814	493	17	4		4	GRAMD1B	11	123483367	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	19575831	123483367	11523149	207	77102											
OR8B2	26595	broad.mit.edu	37	chr11	124266271	124266271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactaataaaaatttaaaGttcttcaatcgttttacatt	2	7	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124266271	T	T	124266271	1	4	66	0	1	0	0	0	0	0	0	0	11321	1044	36	3		3	OR8B2	11	124266271	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	782904	124266271	10740245	208	77103											
CCDC77	84318	broad.mit.edu	37	chr12	528818	528821	+	Intron	DEL	TGTG	-	-													gctccattacagtgctcttcTgtgtgtgtgtgctgggagtg					rs72187328		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	528821	-	-	528818	6	5	66	0	1	1	0	1	0	0	0	0	2879	1595	55	0		0	CCDC77	12	528818	Intron	DEL	TGTG	TCGA-17-Z037-01A-01W-0746-08		528818	133323077	209	77104											
ERC1	23085	broad.mit.edu	37	chr12	1577423	1577424	+	Intron	INS	-	AG	AG													ttagcactgtatgatacgacINSagaaaagctgcagggggaag					rs144666233	by1000genomes	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	1577424	AG	AG	1577423	6	5	66	0	1	1	1	0	0	0	0	0	5252	493	17	0		0	ERC1	12	1577423	Intron	INS	-	TCGA-17-Z037-01A-01W-0746-08	1048605	1577423	132274472	210	77105											
ERC1	23085	broad.mit.edu	37	chr12	1594905	1594906	+	Intron	DEL	TA	-	-													atgtatagctcttctgtctcTatacagacattttaaatttc					rs142113459		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1594906	-	-	1594905	6	5	66	0	1	1	0	1	0	0	0	0	5252	1537	53	0		0	ERC1	12	1594905	Intron	DEL	TA	TCGA-17-Z037-01A-01W-0746-08	17482	1594905	132256990	211	77106											
CACNA1C	775	broad.mit.edu	37	chr12	2488008	2488008	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctctttccttctttttttCtttccttttcttttctttcc	0	13	5	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2488008	A	A	2488008	1	1	66	0	1	0	0	0	0	0	0	0	2566	928	32	3		3	CACNA1C	12	2488008	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	893103	2488008	131363887	212	77107											
TSPAN9	10867	broad.mit.edu	37	chr12	3307516	3307517	+	Intron	DEL	GT	-	-													caccaccagcacagctcaccGtaccagcacaggccaccacc							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3307517	-	-	3307516	6	5	66	0	1	1	0	1	0	0	0	0	16779	1160	40	0		0	TSPAN9	12	3307516	Intron	DEL	GT	TCGA-17-Z037-01A-01W-0746-08	819508	3307516	130544379	213	77108											
PRMT8	56341	broad.mit.edu	37	chr12	3677561	3677562	+	Intron	INS	-	GTT	GTT													cctgtgcagttcaaagccagINSgttgttaagggtcagttgta					rs150216277	by1000genomes	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTT	3677562	GTT	GTT	3677561	6	5	66	0	1	1	1	0	0	0	0	0	12648	1015	35	0		0	PRMT8	12	3677561	Intron	INS	-	TCGA-17-Z037-01A-01W-0746-08	370045	3677561	130174334	214	77109											
PRMT8	56341	broad.mit.edu	37	chr12	3680788	3680789	+	Intron	INS	-	A	A													ttcataccttttggaaaaggINSaaaaaaaaaaatctgaaagt							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3680789	A	A	3680788	6	5	66	0	1	1	1	0	0	0	0	0	12648	1189	41	0		0	PRMT8	12	3680788	Intron	INS	-	TCGA-17-Z037-01A-01W-0746-08	3227	3680788	130171107	215	77110											
EFCAB4B	84766	broad.mit.edu	37	chr12	3775523	3775524	+	Intron	DEL	GT	-	-													gtgtgtgtgtgtgtgtgtgcGtgcgtgtgcgcgtgcgcgcg					rs66798123		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3775524	-	-	3775523	6	5	66	0	1	1	0	1	0	0	0	0	4977	1160	40	0		0	EFCAB4B	12	3775523	Intron	DEL	GT	TCGA-17-Z037-01A-01W-0746-08	94735	3775523	130076372	216	77111											
ANO2	57101	broad.mit.edu	37	chr12	5765643	5765643	+	Intron	DEL	C	-	-													acacactcacatttgatcagCcccagttgtcatggggtcta					rs66969064		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5765643	-	-	5765643	6	5	66	0	1	1	0	1	0	0	0	0	697	754	26	0		0	ANO2	12	5765643	Intron	DEL	C	TCGA-17-Z037-01A-01W-0746-08	1990120	5765643	128086252	217	77112											
VWF	7450	broad.mit.edu	37	chr12	6138254	6138254	+	Intron	DEL	A	-	-													ctaccaagcaaatggaaggcAaaaaaaaaaaagcaggggtt							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6138254	-	-	6138254	6	5	66	0	1	1	0	1	0	0	0	0	17373	145	5	0		0	VWF	12	6138254	Intron	DEL	A	TCGA-17-Z037-01A-01W-0746-08	372611	6138254	127713641	218	77113											
A2M	2	broad.mit.edu	37	chr12	9242693	9242693	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaactcaagatttagaaaTgttcaatgctctgtaaactt	5	8	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9242693	C	C	9242693	1	2	66	0	1	0	0	0	0	0	0	0	4	1479	51	5		5	A2M	12	9242693	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	3104439	9242693	124609202	219	77114											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25398284	G	G	25398284	3	3	66	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	16155591	25398284	108453611	220	77115											
CAPRIN2	65981	broad.mit.edu	37	chr12	30863357	30863357	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcaccactgttaaaggtttCgttgtctctttctgggctgc	10	10	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30863357	T	T	30863357	3	4	66	1	0	0	0	0	1	0	0	0	2662	893	31	4	524	4	CAPRIN2	12	30863357	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	5465073	30863357	102988538	221	77116											
SCN8A	6334	broad.mit.edu	37	chr12	52201020	52201020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaggcggggcttcatctGcaaaaagacaacttctaata	10	9	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52201020	T	T	52201020	3	4	66	1	0	0	0	0	1	0	0	0	14037	1319	46	3	5852	3	SCN8A	12	52201020	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	21337663	52201020	81650875	222	77117											
KRT6C	286887	broad.mit.edu	37	chr12	52865969	52865969	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgtactgctcgaacaaCggctccaggttctgcctcac	9	13	2	1	rs147574610		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52865969	T	T	52865969	2	4	66	1	0	0	0	0	0	0	0	1	8553	523	19	4		4	KRT6C	12	52865969	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	664949	52865969	80985926	223	77118											
KRT78	196374	broad.mit.edu	37	chr12	53233174	53233174	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctgccaagaaacgcaccGggtcagagcagggtcatcag	14	11	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53233174	A	A	53233174	1	1	66	0	1	0	0	0	0	0	0	0	8562	1131	39	4		4	KRT78	12	53233174	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	367205	53233174	80618721	224	77119											
ITGA7	3679	broad.mit.edu	37	chr12	56093778	56093778	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacaaaaagcaaccctgtGgggggtggggtgagacacca	15	9	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56093778	T	T	56093778	1	4	66	0	1	0	0	0	0	0	0	0	7951	1363	47	2		2	ITGA7	12	56093778	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2860604	56093778	77758117	225	77120											
LRP1	4035	broad.mit.edu	37	chr12	57593171	57593171	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgtcttccatgccctgCgccagccagacggtgagcag	12	14	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57593171	T	T	57593171	3	4	66	1	0	0	0	0	1	0	0	0	9038	768	27	4	10095	4	LRP1	12	57593171	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1499393	57593171	76258724	226	77121											
TCHP	84260	broad.mit.edu	37	chr12	110353431	110353431	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccctgggcctgctcatcGccccgcgccggggtctgctc	12	20	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110353431	A	A	110353431	1	1	66	0	1	0	0	0	0	0	0	0	15824	1102	38	4		4	TCHP	12	110353431	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	52760260	110353431	23498464	227	77122											
RFC3	5983	broad.mit.edu	37	chr13	34409732	34409732	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaccacttttaacagacctCttttctattcacatagaaac	2	11	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34409732	G	G	34409732	1	3	66	0	1	0	0	0	0	0	0	0	13354	928	32	4		4	RFC3	13	34409732	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08		34409732	80760146	228	77123											
KBTBD6	89890	broad.mit.edu	37	chr13	41705374	41705374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgccacatccatgccctcaCgacacagcaagcgatctgca	7	16	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41705374	T	T	41705374	3	4	66	1	0	0	0	0	1	0	0	0	8067	536	19	4	754	4	KBTBD6	13	41705374	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	7295642	41705374	73464504	229	77124											
SLITRK6	84189	broad.mit.edu	37	chr13	86370440	86370440	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgttatttaataagcttagTtggaaaggtcgtgatggtgg	13	4	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86370440	A	A	86370440	3	1	66	1	0	0	0	0	1	0	0	0	14861	1722	60	5	2325	5	SLITRK6	13	86370440	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	44665066	86370440	28799438	230	77125											
MYO16	23026	broad.mit.edu	37	chr13	109328666	109328666	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatttacattattaaggagCgctgagcaatatttttattc	6	5	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109328666	T	T	109328666	1	4	66	0	1	0	0	0	0	0	0	0	10158	783	27	4		4	MYO16	13	109328666	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	22958226	109328666	5841212	231	77126											
MYH7	4625	broad.mit.edu	37	chr14	23885173	23885173	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtatcaagacactactgcttCgccaggccacgtggaggcca	11	13	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23885173	T	T	23885173	1	4	66	0	1	0	0	0	0	0	0	0	10133	899	31	4		4	MYH7	14	23885173	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08		23885173	83464367	232	77127											
GPR65	8477	broad.mit.edu	37	chr14	88478143	88478143	+	Frame_Shift_Del	DEL	C	-	-													ggtgtaatacatcacaaagaCaaagaaaacgcatactttct							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88478143	-	-	88478143	7	5	66	1	0	1	0	1	0	0	0	0	6771	479	17	0	954	0	GPR65	14	88478143	Frame_Shift_Del	DEL	C	TCGA-17-Z037-01A-01W-0746-08	64592970	88478143	18871397	233	77128											
KIAA1409	57578	broad.mit.edu	37	chr14	94044289	94044289	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagtcctttgcgtagtccGtttcgtagccctttcaagaa	10	11	1	1	rs149686132		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94044289	A	A	94044289	2	1	66	1	0	0	0	0	0	0	0	1	8300	1132	40	4		4	KIAA1409	14	94044289	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	5566146	94044289	13305251	234	77129											
SERPINA10	51156	broad.mit.edu	37	chr14	94752629	94752629	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagatgatggtgaaatgtaGacaaagccctagtctgtgga	12	6	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94752629	C	C	94752629	1	2	66	0	1	0	0	0	0	0	0	0	14200	957	33	4		4	SERPINA10	14	94752629	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	708340	94752629	12596911	235	77130											
AK7	122481	broad.mit.edu	37	chr14	96917885	96917885	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacactatcctcaaggagtAcaagcaaagcagaggattga	9	9	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96917885	G	G	96917885	3	3	66	1	0	0	0	0	1	0	0	0	444	391	14	5	1114	5	AK7	14	96917885	Missense_Mutation	SNP	A	TCGA-17-Z037-01A-01W-0746-08	2165256	96917885	10431655	236	77131											
RYR3	6263	broad.mit.edu	37	chr15	33878412	33878412	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagagcatgttgattagtcTttcttgactttgataaaaat	8	4	2	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33878412	G	G	33878412	1	3	66	0	1	0	0	0	0	0	0	0	13881	1624	56	5		5	RYR3	15	33878412	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08		33878412	68652980	237	77132											
FBN1	2200	broad.mit.edu	37	chr15	48791196	48791196	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttaccactgcctgctgacGtcattcctggcccactgctg	8	17	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48791196	A	A	48791196	3	1	66	1	0	0	0	0	1	0	0	0	5759	1145	40	4	6658	4	FBN1	15	48791196	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	14912784	48791196	53740196	238	77133											
ZNF774	342132	broad.mit.edu	37	chr15	90904004	90904004	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagcaccaacgaacccacaCgggagaacggcccttcaaat	8	14	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90904004	T	T	90904004	3	4	66	1	0	0	0	0	1	0	0	0	18276	536	19	4	951	4	ZNF774	15	90904004	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	42112808	90904004	11627388	239	77134											
PDPK1	5170	broad.mit.edu	37	chr16	2645951	2645951	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcgtggaatccttccatctCttgattttcatcagacatca	7	11	4	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2645951	G	G	2645951	1	3	66	0	1	0	0	0	0	0	0	0	11781	928	32	4		4	PDPK1	16	2645951	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08		2645951	87708802	240	77135											
CPPED1	55313	broad.mit.edu	37	chr16	12758835	12758835	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggtgaacaattttctcggCggtgaccaccacgactcgga	11	12	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12758835	T	T	12758835	3	4	66	1	0	0	0	0	1	0	0	0	3854	768	27	4	95	4	CPPED1	16	12758835	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	10112884	12758835	77595918	241	77136											
BFAR	51283	broad.mit.edu	37	chr16	14761536	14761536	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatttctggaaagtatcaaCgcaggggctttttgtggcca	11	9	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14761536	T	T	14761536	3	4	66	1	0	0	0	0	1	0	0	0	1420	536	19	4	1231	4	BFAR	16	14761536	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2002701	14761536	75593217	242	77137											
SMG1	23049	broad.mit.edu	37	chr16	18896866	18896866	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggaatgaggaactcaccctAaaattagtgctgaaaatatg	9	7	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18896866	G	G	18896866	2	3	66	1	0	0	0	0	0	0	0	1	14909	359	13	5		5	SMG1	16	18896866	Silent	SNP	A	TCGA-17-Z037-01A-01W-0746-08	4135330	18896866	71457887	243	77138											
PDILT	204474	broad.mit.edu	37	chr16	20376941	20376941	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccccaccttgattggaaaCcactaaaggttttctcgtgt	7	12	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20376941	T	T	20376941	1	4	66	0	1	0	0	0	0	0	0	0	11768	522	18	4		4	PDILT	16	20376941	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1480075	20376941	69977812	244	77139											
ACSM1	116285	broad.mit.edu	37	chr16	20635597	20635597	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactccatagcttaaaaagtCaatgtttattgaatgagtgg	8	5	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20635597	T	T	20635597	1	4	66	0	1	0	0	0	0	0	0	0	182	841	29	4		4	ACSM1	16	20635597	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	258656	20635597	69719156	245	77140											
POLR3E	55718	broad.mit.edu	37	chr16	22334242	22334242	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaggtgctctgcaggggccGagacttcgttgtaagtacct	14	9	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22334242	A	A	22334242	3	1	66	1	0	0	0	0	1	0	0	0	12327	1058	37	4	1108	4	POLR3E	16	22334242	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1698645	22334242	68020511	246	77141											
ATP2A1	487	broad.mit.edu	37	chr16	28914913	28914913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccctgcgcctgcaggggCcacatctccggggcagcccc	12	20	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28914913	A	A	28914913	1	1	66	0	1	0	0	0	0	0	0	0	1140	754	26	3		3	ATP2A1	16	28914913	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	6580671	28914913	61439840	247	77142											
ABCC11	85320	broad.mit.edu	37	chr16	48209077	48209077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggcctggaaatcggggCattggtcaccagctcactat	13	10	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48209077	A	A	48209077	1	1	66	0	1	0	0	0	0	0	0	0	51	725	25	3		3	ABCC11	16	48209077	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	19294164	48209077	42145676	248	77143											
SLC6A2	6530	broad.mit.edu	37	chr16	55690765	55690765	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccccgcgacggcgacgcGcagccccgggagacctgggg	18	17	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55690765	A	A	55690765	2	1	66	1	0	0	0	0	0	0	0	1	14797	1074	38	4		4	SLC6A2	16	55690765	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	7481688	55690765	34663988	249	77144											
SLC7A6	9057	broad.mit.edu	37	chr16	68331093	68331093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcaggttagggctgtaGctagatgtttactaaaccct	10	7	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68331093	T	T	68331093	1	4	66	0	1	0	0	0	0	0	0	0	14815	986	34	3		3	SLC7A6	16	68331093	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	12640328	68331093	22023660	250	77145											
ADAMTS18	170692	broad.mit.edu	37	chr16	77327081	77327081	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactggtacactggctctcGgggagggtttctgcggcaga	16	9	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77327081	A	A	77327081	2	1	66	1	0	0	0	0	0	0	0	1	263	1103	39	4		4	ADAMTS18	16	77327081	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	8995988	77327081	13027672	251	77146											
SPATA22	84690	broad.mit.edu	37	chr17	3349724	3349724	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagacattaaaacctgtcctCcagagagtattactgaagta	7	9	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3349724	G	G	3349724	1	3	66	0	1	0	0	0	0	0	0	0	15124	870	30	4		4	SPATA22	17	3349724	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08		3349724	77845486	252	77147											
TP53	7157	broad.mit.edu	37	chr17	7577097	7577097	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcttcctctgtgcgccggtCtctcccaggacaggcacaaa	9	16	3	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577097	T	T	7577097	3	4	66	1	0	0	0	0	1	0	0	0	16505	913	32	4	445	4	TP53	17	7577097	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	4227373	7577097	73618113	253	77148											
ALOX15B	247	broad.mit.edu	37	chr17	7948375	7948375	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctcagtgccttcacaccCgtcccctactggagacagag	8	16	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7948375	T	T	7948375	1	4	66	0	1	0	0	0	0	0	0	0	539	667	23	4		4	ALOX15B	17	7948375	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	371278	7948375	73246835	254	77149											
DNAH9	1770	broad.mit.edu	37	chr17	11555940	11555940	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caactaggagggagaatattCtgacgataatgaagttacct	10	6	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11555940	G	G	11555940	1	3	66	0	1	0	0	0	0	0	0	0	4648	928	32	4		4	DNAH9	17	11555940	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	3607565	11555940	69639270	255	77150											
PIGL	9487	broad.mit.edu	37	chr17	16203255	16203255	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagagcacgtggccagagTcctccttcagcacatagaag	10	13	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16203255	G	G	16203255	3	3	66	1	0	0	0	0	1	0	0	0	11986	1667	58	5	399	5	PIGL	17	16203255	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	4647315	16203255	64991955	256	77151											
ACCN1	40	broad.mit.edu	37	chr17	31478199	31478199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaaaacacacacacacacGcacacacacacacacacacg	2	18	0	0	rs144539243	by1000genomes	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31478199	A	A	31478199	1	1	66	0	1	0	0	0	0	0	0	0	128	1102	38	4		4	ACCN1	17	31478199	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	15274944	31478199	49717011	257	77152											
SLFN11	91607	broad.mit.edu	37	chr17	33687335	33687335	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacactggtctgctaaggggAggcccactagatagactcag	12	10	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33687335	G	G	33687335	2	3	66	1	0	0	0	0	0	0	0	1	14847	291	11	5		5	SLFN11	17	33687335	Silent	SNP	A	TCGA-17-Z037-01A-01W-0746-08	2209136	33687335	47507875	258	77153											
ACACA	31	broad.mit.edu	37	chr17	35500734	35500734	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaggctttcctttagctcAatatgcagcagtatcctttt	6	10	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35500734	G	G	35500734	1	3	66	0	1	0	0	0	0	0	0	0	106	145	5	5		5	ACACA	17	35500734	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	1813399	35500734	45694476	259	77154											
ACACA	31	broad.mit.edu	37	chr17	35500745	35500745	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttagctcaatatgcagcaGtatccttttcgtatttttcc	5	10	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35500745	A	A	35500745	1	1	66	0	1	0	0	0	0	0	0	0	106	1044	36	4		4	ACACA	17	35500745	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	11	35500745	45694465	260	77155											
KRT34	3885	broad.mit.edu	37	chr17	39535236	39535236	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcactctccaggaggctccGgtacgtgttgatctcacact	9	14	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39535236	A	A	39535236	3	1	66	1	0	0	0	0	1	0	0	0	8542	1115	39	4	123	4	KRT34	17	39535236	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	4034491	39535236	41659974	261	77156											
KRT38	8687	broad.mit.edu	37	chr17	39594546	39594546	+	Missense_Mutation	SNP	G	A	A													ggtcctcggcttcacacaggGagttctgcagacagtccttc							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39594546	A	A	39594546	3	1	66	1	0	0	0	0	1	0	0	0	8546	1174	41	4	338	4	KRT38	17	39594546	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	59310	39594546	41600664	262	77157	350	2									
KRT38	8687	broad.mit.edu	37	chr17	39594556	39594556	+	Silent	SNP	G	A	A													ttcacacagggagttctgcaGacagtccttctgtagtggga							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39594556	A	A	39594556	2	1	66	1	0	0	0	0	0	0	0	1	8546	933	33	4		4	KRT38	17	39594556	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	10	39594556	41600654	263	77158	350	2									
KAT2A	2648	broad.mit.edu	37	chr17	40269436	40269436	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaggcgggcgatatactccTtaggcatgcgcggcagctgg	16	11	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40269436	A	A	40269436	3	1	66	1	0	0	0	0	1	0	0	0	8051	1609	56	5	942	5	KAT2A	17	40269436	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	674880	40269436	40925774	264	77159											
ETV4	2118	broad.mit.edu	37	chr17	41607103	41607103	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttggtcccccaagcaaccGcctcccacccgagggatttc	8	17	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41607103	A	A	41607103	1	1	66	0	1	0	0	0	0	0	0	0	5323	1102	38	4		4	ETV4	17	41607103	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1337667	41607103	39588107	265	77160											
GH1	2688	broad.mit.edu	37	chr17	61994900	61994900	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagagaaggagaggccaagCgcttgggtactgttccctcc	14	10	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61994900	T	T	61994900	1	4	66	0	1	0	0	0	0	0	0	0	6431	783	27	4		4	GH1	17	61994900	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	20387797	61994900	19200310	266	77161											
CCDC46	201134	broad.mit.edu	37	chr17	64125810	64125810	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagttcagatattatacacaTacaatatgattttgacacat	4	6	1	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64125810	A	A	64125810	1	1	66	0	1	0	0	0	0	0	0	0	2845	1421	49	5		5	CCDC46	17	64125810	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	2130910	64125810	17069400	267	77162											
CD300C	10871	broad.mit.edu	37	chr17	72540724	72540724	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctaggctcaggcaggcctgGtgctgagaaaaggaggggct	17	9	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72540724	C	C	72540724	1	2	66	0	1	0	0	0	0	0	0	0	3027	1276	44	4		4	CD300C	17	72540724	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	8414914	72540724	8654486	268	77163											
DNAH17	8632	broad.mit.edu	37	chr17	76471675	76471675	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccccacacaatgccactcGgatgtcgataatgcaaccgg	9	14	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76471675	A	A	76471675	1	1	66	0	1	0	0	0	0	0	0	0	4641	1131	39	4		4	DNAH17	17	76471675	5'Flank	SNP	G	TCGA-17-Z037-01A-01W-0746-08	3930951	76471675	4723535	269	77164											
CLUL1	27098	broad.mit.edu	37	chr18	619202	619203	+	Intron	DEL	AT	-	-													ctcaaagaaaaaattgccacAtgtcttttaggtttttctga							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	619203	-	-	619202	6	5	66	0	1	1	0	1	0	0	0	0	3602	232	8	0		0	CLUL1	18	619202	Intron	DEL	AT	TCGA-17-Z037-01A-01W-0746-08		619202	77458046	270	77165											
ATP5A1	498	broad.mit.edu	37	chr18	43666458	43666458	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaattctgtttccaagaaGatctataatgtaaggaaata	6	5	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43666458	T	T	43666458	2	4	66	1	0	0	0	0	0	0	0	1	1151	932	33	3		3	ATP5A1	18	43666458	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	43047256	43666458	34410790	271	77166											
CD226	10666	broad.mit.edu	37	chr18	67614224	67614224	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actccacctgtgttaagatgCccattgatggatacacacat	7	11	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67614224	G	G	67614224	3	3	66	1	0	0	0	0	1	0	0	0	3016	739	26	4	902	4	CD226	18	67614224	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	23947766	67614224	10463024	272	77167											
NETO1	81832	broad.mit.edu	37	chr18	70526282	70526282	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagagtacttttcatcaaagTaaagttcaatgcactgtctt	6	7	4	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70526282	G	G	70526282	3	3	66	1	0	0	0	0	1	0	0	0	10434	1638	57	5	1390	5	NETO1	18	70526282	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	2912058	70526282	7550966	273	77168											
FBXO15	201456	broad.mit.edu	37	chr18	71797596	71797596	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaactgcacatacgtcctaCgtacacgatactttgagctg	7	11	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71797596	T	T	71797596	1	4	66	0	1	0	0	0	0	0	0	0	5785	551	19	4		4	FBXO15	18	71797596	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1271314	71797596	6279652	274	77169											
TSHZ1	10194	broad.mit.edu	37	chr18	73000513	73000513	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacttttgcgagcaagcacGcagtcaaactgcaccttagt	10	11	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73000513	A	A	73000513	3	1	66	1	0	0	0	0	1	0	0	0	16748	1087	38	4	3018	4	TSHZ1	18	73000513	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1202917	73000513	5076735	275	77170											
MYO1F	4542	broad.mit.edu	37	chr19	8587292	8587292	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcaatgacctcgttcacGttgaagctcagctcgtccac	7	14	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8587292	A	A	8587292	2	1	66	1	0	0	0	0	0	0	0	1	10167	1136	40	4		4	MYO1F	19	8587292	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08		8587292	50541691	276	77171											
CDC37	11140	broad.mit.edu	37	chr19	10504047	10504047	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcgatgcgcagcttggcaCggccccgcacacgctccttg	11	17	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10504047	T	T	10504047	3	4	66	1	0	0	0	0	1	0	0	0	3098	536	19	4	351	4	CDC37	19	10504047	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1916755	10504047	48624936	277	77172											
LSR	51599	broad.mit.edu	37	chr19	35749727	35749727	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcatatgcatttgatcatcTgcagcctgcccagcccactg	8	14	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35749727	G	G	35749727	1	3	66	0	1	0	0	0	0	0	0	0	9151	1595	55	5		5	LSR	19	35749727	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	25245680	35749727	23379256	278	77173											
ZFP82	284406	broad.mit.edu	37	chr19	36884572	36884572	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccttacattcatagagttTttcaccagaatgaagtctct	5	9	3	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36884572	A	A	36884572	4	1	66	1	0	0	0	0	0	1	0	0	17779	1850	64	5	932	5	ZFP82	19	36884572	Nonsense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1134845	36884572	22244411	279	77174											
ZNF260	339324	broad.mit.edu	37	chr19	37005579	37005579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatttaaagggcttctttcCagtatggatgttctgatgtt	9	6	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37005579	T	T	37005579	3	4	66	1	0	0	0	0	1	0	0	0	17928	603	21	4	680	4	ZNF260	19	37005579	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	121007	37005579	22123404	280	77175											
ZNF607	84775	broad.mit.edu	37	chr19	38190762	38190762	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcctataaagctgcattttCccatcgctgattatttcaca	4	11	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38190762	T	T	38190762	2	4	66	1	0	0	0	0	0	0	0	1	18160	842	30	4		4	ZNF607	19	38190762	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1185183	38190762	20938221	281	77176											
ZNF607	84775	broad.mit.edu	37	chr19	38190779	38190779	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcccatcgctgattatttCacatcttgaatccaaatcta	3	11	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38190779	T	T	38190779	3	4	66	1	0	0	0	0	1	0	0	0	18160	835	29	4	1841	4	ZNF607	19	38190779	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	17	38190779	20938204	282	77177											
HNRNPL	3191	broad.mit.edu	37	chr19	39329017	39329017	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaggacccgactgcctgCgcagctccacggcacacacc	11	18	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39329017	T	T	39329017	1	4	66	0	1	0	0	0	0	0	0	0	7337	783	27	4		4	HNRNPL	19	39329017	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	1138238	39329017	19799966	283	77178											
AKT2	208	broad.mit.edu	37	chr19	40745948	40745948	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgggaaggggagggcaacTcacagtgaggaacgggtgcc	18	8	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40745948	G	G	40745948	1	3	66	0	1	0	0	0	0	0	0	0	480	1566	54	5		5	AKT2	19	40745948	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1416931	40745948	18383035	284	77179											
ZFP112	7771	broad.mit.edu	37	chr19	44901231	44901231	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaccacctgcctcacaaAgtcattatgagcagataaag	6	11	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44901231	T	T	44901231	1	4	66	0	1	0	0	0	0	0	0	0	17764	87	3	5		5	ZFP112	19	44901231	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	4155283	44901231	14227752	285	77180											
PNMAL1	55228	broad.mit.edu	37	chr19	46973245	46973245	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggcagacacccaggccaCggccttcttctttggtgggc	12	14	2	1	rs144904720	byFrequency	TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46973245	T	T	46973245	3	4	66	1	0	0	0	0	1	0	0	0	12252	536	19	4	301	4	PNMAL1	19	46973245	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2072014	46973245	12155738	286	77181											
FAM71E1	112703	broad.mit.edu	37	chr19	50979509	50979509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcagagggagaaagcgaGggggcgggactacgcgcact	20	8	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50979509	T	T	50979509	3	4	66	1	0	0	0	0	1	0	0	0	5662	1000	35	2	574	2	FAM71E1	19	50979509	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	4006264	50979509	8149474	287	77182											
KLK12	43849	broad.mit.edu	37	chr19	51532815	51532815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccttggggagggctccaaGtctggtcattagacaaaaga	14	8	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51532815	A	A	51532815	1	1	66	0	1	0	0	0	0	0	0	0	8471	1044	36	4		4	KLK12	19	51532815	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	553306	51532815	7596168	288	77183											
C19orf51	352909	broad.mit.edu	37	chr19	55678034	55678034	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtgggatgggaccacagCgagcaactgaccaatgagag	14	9	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55678034	A	A	55678034	1	1	66	0	1	0	0	0	0	0	0	0	1952	783	27	3		3	C19orf51	19	55678034	5'Flank	SNP	C	TCGA-17-Z037-01A-01W-0746-08	4145219	55678034	3450949	289	77184											
NLRP5	126206	broad.mit.edu	37	chr19	56538691	56538691	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgttcatcattgacggtttCgatgacctgggctctgtcct	10	10	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56538691	T	T	56538691	2	4	66	1	0	0	0	0	0	0	0	1	10575	883	31	4		4	NLRP5	19	56538691	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	860657	56538691	2590292	290	77185											
EDEM2	55741	broad.mit.edu	37	chr20	33725652	33725652	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcaggacctactggacttCgtctctgccccatctctgtg	9	14	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33725652	A	A	33725652	1	1	66	0	1	0	0	0	0	0	0	0	4952	899	31	3		3	EDEM2	20	33725652	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08		33725652	29299868	291	77186											
BPI	671	broad.mit.edu	37	chr20	36953265	36953265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgctttcctttagtgaGccccgggggttctgggagga	14	10	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36953265	T	T	36953265	1	4	66	0	1	0	0	0	0	0	0	0	1499	986	34	3		3	BPI	20	36953265	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	3227613	36953265	26072255	292	77187											
BAGE2	85319	broad.mit.edu	37	chr21	11084678	11084678	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcacgctaatgaattctgaGaatagtccctggtactacag	9	9	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11084678	C	C	11084678	1	2	66	0	1	0	0	0	0	0	0	0	1297	957	33	4		4	BAGE2	21	11084678	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08		11084678	37045217	293	77188											
ADAMTS5	11096	broad.mit.edu	37	chr21	28338433	28338433	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggaacctccggccgcccGcgtagacgaggtagcccacc	13	16	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28338433	A	A	28338433	3	1	66	1	0	0	0	0	1	0	0	0	269	1087	38	4	2546	4	ADAMTS5	21	28338433	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	17253755	28338433	19791462	294	77189											
TIAM1	7074	broad.mit.edu	37	chr21	32559430	32559430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacaaaaagacagaatggCagggctcacaccttctgaat	8	10	2	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32559430	A	A	32559430	1	1	66	0	1	0	0	0	0	0	0	0	16013	725	25	3		3	TIAM1	21	32559430	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	4220997	32559430	15570465	295	77190											
GART	2618	broad.mit.edu	37	chr21	34903822	34903822	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctccgtcaagaagttcTtcaatgacaattgtttctcc	5	11	6	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34903822	G	G	34903822	3	3	66	1	0	0	0	0	1	0	0	0	6305	1606	56	5	2534	5	GART	21	34903822	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	2344392	34903822	13226073	296	77191											
DSCAM	1826	broad.mit.edu	37	chr21	41711173	41711173	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccacgttcccctccgaCgtgatcatctggctgatgcg	10	15	2	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41711173	T	T	41711173	2	4	66	1	0	0	0	0	0	0	0	1	4808	523	19	4		4	DSCAM	21	41711173	Silent	SNP	C	TCGA-17-Z037-01A-01W-0746-08	6807351	41711173	6418722	297	77192											
UMODL1	89766	broad.mit.edu	37	chr21	43519072	43519072	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactacgtggtcctcaacgTcaccagtgacagttttcaag	9	11	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43519072	A	A	43519072	3	1	66	1	0	0	0	0	1	0	0	0	17106	1667	58	5	994	5	UMODL1	21	43519072	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1807899	43519072	4610823	298	77193											
ABCG1	9619	broad.mit.edu	37	chr21	43708163	43708163	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggtaaagcagacaaaaCgattaaaggggttgagaaag	13	3	0	3			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43708163	T	T	43708163	4	4	66	1	0	0	0	0	0	1	0	0	68	528	19	4	1340	4	ABCG1	21	43708163	Nonsense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	189091	43708163	4421732	299	77194											
XPNPEP3	63929	broad.mit.edu	37	chr22	41318271	41318271	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtttttctaatcaaacTtagtagcaaacttcttagaa	7	6	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41318271	G	G	41318271	1	3	66	0	1	0	0	0	0	0	0	0	17571	1624	56	5		5	XPNPEP3	22	41318271	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08		41318271	9986295	300	77195											
ASMT	438	broad.mit.edu	37	chrX	1752198	1752198	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggtgtgtttgtgtccGtggggaagcagagatgtgtc	18	4	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1752198	A	A	1752198	1	1	66	0	1	0	0	0	0	0	0	0	1049	1160	40	4		4	ASMT	23	1752198	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08		1752198	153518362	301	77196											
MXRA5	25878	broad.mit.edu	37	chrX	3241359	3241359	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagatttttcccacggacTttggctaaaatatcagccca	9	10	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3241359	G	G	3241359	3	3	66	1	0	0	0	0	1	0	0	0	10097	1606	56	5	6131	5	MXRA5	23	3241359	Missense_Mutation	SNP	T	TCGA-17-Z037-01A-01W-0746-08	1489161	3241359	152029201	302	77197											
GEMIN8	54960	broad.mit.edu	37	chrX	14038377	14038377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctgtaacgtggatgctGcccagatcttctgaaatgtg	11	9	2	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14038377	T	T	14038377	3	4	66	1	0	0	0	0	1	0	0	0	6398	1328	46	3	444	3	GEMIN8	23	14038377	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	10797018	14038377	141232183	303	77198											
CTPS2	56474	broad.mit.edu	37	chrX	16717205	16717205	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccaccatcatttaagaCgaagacttcacctaggatta	5	11	3	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16717205	T	T	16717205	3	4	66	1	0	0	0	0	1	0	0	0	4057	536	19	4	1646	4	CTPS2	23	16717205	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2678828	16717205	138553355	304	77199											
PDHA1	5160	broad.mit.edu	37	chrX	19375756	19375756	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaactaactaactgcctacCggttctgttttaggggccca	8	12	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19375756	T	T	19375756	1	4	66	0	1	0	0	0	0	0	0	0	11758	667	23	4		4	PDHA1	23	19375756	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2658551	19375756	135894804	305	77200											
PTCHD1	139411	broad.mit.edu	37	chrX	23412133	23412134	+	Missense_Mutation	DNP	TC	AA	AA													cttgtttttaatagcatttgTcaccttctttcactgctttg							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	23412134	AA	AA	23412133	3	1	66	1	0	0	0	0	1	0	0	0	12838	1667	58	5	2508	5	PTCHD1	23	23412133	Missense_Mutation	DNP	TC	TCGA-17-Z037-01A-01W-0746-08	4036377	23412133	131858427	306	77201											
DMD	1756	broad.mit.edu	37	chrX	33229458	33229458	+	5'UTR	DEL	A	-	-													gtgtatatcaaggcagcgatAaaaaaaacctggtaaaagtt							TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33229458	-	-	33229458	6	5	66	0	1	1	0	1	0	0	0	0	4620	377	13	0		0	DMD	23	33229458	5'UTR	DEL	A	TCGA-17-Z037-01A-01W-0746-08	9817325	33229458	122041102	307	77202											
ZNF157	7712	broad.mit.edu	37	chrX	47272631	47272631	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acacaggagagaaaccttacGaatgtaatgagtgtggtaat	11	5	0	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47272631	A	A	47272631	3	1	66	1	0	0	0	0	1	0	0	0	17863	1059	37	4	1173	4	ZNF157	23	47272631	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	14043173	47272631	107997929	308	77203											
PRICKLE3	4007	broad.mit.edu	37	chrX	49032614	49032614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctcctcagggcctgtaGctgttaagggggagacagag	17	8	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49032614	T	T	49032614	3	4	66	1	0	0	0	0	1	0	0	0	12594	985	34	3	595	3	PRICKLE3	23	49032614	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1759983	49032614	106237946	309	77204											
GAGE1	2543	broad.mit.edu	37	chrX	49354603	49354603	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcgagcccccccccaGcggtgtggagtgcggagcgc	17	16	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49354603	A	A	49354603	1	1	66	0	1	0	0	0	0	0	0	0	6246	986	34	4		4	GAGE1	23	49354603	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	321989	49354603	105915957	310	77205											
AKAP4	8852	broad.mit.edu	37	chrX	49962272	49962272	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaattagaagggtgaatttAgaaaaactctagagaaaggg	11	3	1	4			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49962272	G	G	49962272	1	3	66	0	1	0	0	0	0	0	0	0	453	435	15	5		5	AKAP4	23	49962272	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	607669	49962272	105308288	311	77206											
WNK3	65267	broad.mit.edu	37	chrX	54335697	54335697	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccctttaaaatttgcctGcaccagctccttaagacctt	4	14	0	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54335697	T	T	54335697	4	4	66	1	0	0	0	0	0	1	0	0	17506	1311	46	3	4724	3	WNK3	23	54335697	Nonsense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	4373425	54335697	100934863	312	77207											
ERCC6L	54821	broad.mit.edu	37	chrX	71425005	71425005	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagttcttttccacgcttTacaagagtctcatagtcatt	5	9	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71425005	C	C	71425005	2	2	66	1	0	0	0	0	0	0	0	1	5260	1741	61	5		5	ERCC6L	23	71425005	Silent	SNP	T	TCGA-17-Z037-01A-01W-0746-08	17089308	71425005	83845555	313	77208											
PGAM4	441531	broad.mit.edu	37	chrX	77225036	77225036	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcttcgcctcctcgtggcCcgccgggctcagatcggcgt	14	17	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77225036	T	T	77225036	3	4	66	1	0	0	0	0	1	0	0	0	11870	623	22	4	668	4	PGAM4	23	77225036	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	5800031	77225036	78045524	314	77209											
BRWD3	254065	broad.mit.edu	37	chrX	79999527	79999527	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctaaattttatcacttttcTtacctgtatggaagtaatag	6	6	2	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79999527	G	G	79999527	1	3	66	0	1	0	0	0	0	0	0	0	1535	1624	56	5		5	BRWD3	23	79999527	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	2774491	79999527	75271033	315	77210											
PCDH11X	27328	broad.mit.edu	37	chrX	91715185	91715185	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagacacagctggcgatgCgccagtctgtggagaacgac	14	10	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91715185	T	T	91715185	1	4	66	0	1	0	0	0	0	0	0	0	11602	783	27	4		4	PCDH11X	23	91715185	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	11715658	91715185	63555375	316	77211											
TAF7L	54457	broad.mit.edu	37	chrX	100537136	100537136	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacccgcctcggcctcccaaAgtgctgggattacaagcgtg	11	15	0	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100537136	T	T	100537136	1	4	66	0	1	0	0	0	0	0	0	0	15652	87	3	5		5	TAF7L	23	100537136	Intron	SNP	A	TCGA-17-Z037-01A-01W-0746-08	8821951	100537136	54733424	317	77212											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104961395	104961395	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccctgcaaagcattcttcGgattcagtggagagtctggg	12	10	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104961395	A	A	104961395	3	1	66	1	0	0	0	0	1	0	0	0	7732	1117	39	4	830	4	IL1RAPL2	23	104961395	Missense_Mutation	SNP	G	TCGA-17-Z037-01A-01W-0746-08	4424259	104961395	50309165	318	77213											
CT47B1	643311	broad.mit.edu	37	chrX	120009284	120009284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatatctgagtcctcctcggCgctcccgccctgggggactg	13	15	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120009284	T	T	120009284	3	4	66	1	0	0	0	0	1	0	0	0	4023	768	27	4	666	4	CT47B1	23	120009284	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	15047889	120009284	35261276	319	77214											
GPR112	139378	broad.mit.edu	37	chrX	135454928	135454928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagccagtgctcttattTaataattcctaaatgatata	4	8	1	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135454928	A	A	135454928	1	1	66	0	1	0	0	0	0	0	0	0	6694	1769	61	5		5	GPR112	23	135454928	Intron	SNP	T	TCGA-17-Z037-01A-01W-0746-08	15445644	135454928	19815632	320	77215											
ARHGEF6	9459	broad.mit.edu	37	chrX	135772779	135772779	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcccttacctccatatgcCgttctaactcttgcaagaga	5	14	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135772779	T	T	135772779	3	4	66	1	0	0	0	0	1	0	0	0	912	652	23	4	1207	4	ARHGEF6	23	135772779	Missense_Mutation	SNP	C	TCGA-17-Z037-01A-01W-0746-08	317851	135772779	19497781	321	77216											
FMR1	2332	broad.mit.edu	37	chrX	147019516	147019516	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttgaactaatctgtttaGaaatgggtttaaaagtcctg	9	4	1	2			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147019516	C	C	147019516	1	2	66	0	1	0	0	0	0	0	0	0	6018	957	33	4		4	FMR1	23	147019516	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	11246737	147019516	8251044	322	77217											
MAMLD1	10046	broad.mit.edu	37	chrX	149638793	149638793	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcagccagcaagcagggGtctgctacaaagcagcaagg	14	10	1	0			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149638793	A	A	149638793	2	1	66	1	0	0	0	0	0	0	0	1	9300	1248	44	4		4	MAMLD1	23	149638793	Silent	SNP	G	TCGA-17-Z037-01A-01W-0746-08	2619277	149638793	5631767	323	77218											
GABRA3	2556	broad.mit.edu	37	chrX	151393186	151393186	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatatgttaagtttcttttgGaagatcaggcaaaaaaaaaa	7	3	2	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151393186	T	T	151393186	1	4	66	0	1	0	0	0	0	0	0	0	6222	1189	41	3		3	GABRA3	23	151393186	Intron	SNP	G	TCGA-17-Z037-01A-01W-0746-08	1754393	151393186	3877374	324	77219											
TKTL1	8277	broad.mit.edu	37	chrX	153556149	153556149	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcatgttattctgagtctCtttcttgtaccaagctggtt	8	9	3	1			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153556149	A	A	153556149	1	1	66	0	1	0	0	0	0	0	0	0	16058	928	32	3		3	TKTL1	23	153556149	Intron	SNP	C	TCGA-17-Z037-01A-01W-0746-08	2162963	153556149	1714411	325	77220											
VPS13D	55187	broad.mit.edu	37	chr1	12568727	12568727	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccaagattgcgcctagGcgacagagactccgtctcaa	10	12	1	3			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12568727	A	A	12568727	1	1	67	0	1	0	0	0	0	0	0	0	17319	1218	42	4		4	VPS13D	1	12568727	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08		12568727	236681894	1	77221											
ACTL8	81569	broad.mit.edu	37	chr1	18098017	18098017	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagacagtcagatatttggCtcagaaagaggtgacttggt	13	5	2	5			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18098017	T	T	18098017	1	4	67	0	1	0	0	0	0	0	0	0	202	812	28	4		4	ACTL8	1	18098017	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	5529290	18098017	231152604	2	77222											
ALPL	249	broad.mit.edu	37	chr1	21902777	21902777	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggatgggtggatggatggaTgggtggatggatggatggat	22	0	0	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21902777	G	G	21902777	1	3	67	0	1	0	0	0	0	0	0	0	547	1479	51	5		5	ALPL	1	21902777	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08	3804760	21902777	227347844	3	77223											
TCEA3	6920	broad.mit.edu	37	chr1	23718872	23718872	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catacacacacactccacacAtcatacacaaaacacactcc	0	18	1	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23718872	G	G	23718872	1	3	67	0	1	0	0	0	0	0	0	0	15791	232	8	5		5	TCEA3	1	23718872	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08	1816095	23718872	225531749	4	77224											
PRKAA2	5563	broad.mit.edu	37	chr1	57142116	57142116	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatgagtcaatgaatgcaGgcagtctctacaagctggga	12	8	2	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57142116	A	A	57142116	1	1	67	0	1	0	0	0	0	0	0	0	12600	1015	35	4		4	PRKAA2	1	57142116	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	33423244	57142116	192108505	5	77225											
FGGY	55277	broad.mit.edu	37	chr1	59890143	59890143	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagaatcgcttgaaccCgagaggcagaggttgcagtg	16	8	0	4			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59890143	T	T	59890143	1	4	67	0	1	0	0	0	0	0	0	0	5928	667	23	4		4	FGGY	1	59890143	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	2748027	59890143	189360478	6	77226			1	56		2	2	17	C		3.307787e-05
FGGY	55277	broad.mit.edu	37	chr1	59890159	59890159	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccgagaggcagaggttgCagtgagccaaaatcgcgcca	13	11	0	3			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59890159	T	T	59890159	1	4	67	0	1	0	0	0	0	0	0	0	5928	725	25	4		4	FGGY	1	59890159	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	16	59890159	189360462	7	77227			1	56		2	2	17	C		3.307787e-05
IGSF3	3321	broad.mit.edu	37	chr1	117177815	117177815	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatgtctaggccccatctGtaacttacttcatgttccta	5	12	3	0	rs147729146	by1000genomes	TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117177815	C	C	117177815	1	2	67	0	1	0	0	0	0	0	0	0	7671	1392	48	4		4	IGSF3	1	117177815	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	57287656	117177815	132072806	8	77228											
KCNN3	3782	broad.mit.edu	37	chr1	154687080	154687080	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatggtgtgtgtgatgtgTggtgtgtggtgtgtgtgtgt	20	0	0	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154687080	G	G	154687080	1	3	67	0	1	0	0	0	0	0	0	0	8150	1711	59	5		5	KCNN3	1	154687080	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08	37509265	154687080	94563541	9	77229											
GLT25D2	23127	broad.mit.edu	37	chr1	183901493	183901493	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgctgtattaaactacacAgcacacgtagggaaagtgcg	10	9	0	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183901493	G	G	183901493	1	3	67	0	1	0	0	0	0	0	0	0	6531	203	7	5		5	GLT25D2	1	183901493	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08	29214413	183901493	65349128	10	77230											
LTBP1	4052	broad.mit.edu	37	chr2	33567133	33567133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggaaagaacggagaaGgaaattagtaaccgtaagaa	14	3	0	3			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33567133	T	T	33567133	1	4	67	0	1	0	0	0	0	0	0	0	9160	1015	35	2		2	LTBP1	2	33567133	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08		33567133	209632240	11	77231											
SOCS5	9655	broad.mit.edu	37	chr2	46953031	46953031	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgagttgacaattattttCtttcaaccctttaaaaatgt	4	7	3	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46953031	A	A	46953031	1	1	67	0	1	0	0	0	0	0	0	0	15031	928	32	3		3	SOCS5	2	46953031	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	13385898	46953031	196246342	12	77232											
NAB1	4664	broad.mit.edu	37	chr2	191529075	191529076	+	Intron	INS	-	T	T													gcctattacatctttatatcINSttttttttttttggagacag							TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191529076	T	T	191529075	6	5	67	0	1	1	1	0	0	0	0	0	10225	928	32	0		0	NAB1	2	191529075	Intron	INS	-	TCGA-17-Z038-01A-01W-0746-08	144576044	191529075	51670298	13	77233											
ERBB4	2066	broad.mit.edu	37	chr2	212630681	212630681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatctagatcaacatttttGtttaatgaagcacagaaagg	7	5	2	3			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212630681	T	T	212630681	1	4	67	0	1	0	0	0	0	0	0	0	5251	1392	48	3		3	ERBB4	2	212630681	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	21101606	212630681	30568692	14	77234											
SPAG16	79582	broad.mit.edu	37	chr2	214223022	214223022	+	Intron	SNP	T	C	C													tatttcctgaatttgaatgtTggcctgccttgctaggttgg							TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214223022	C	C	214223022	1	2	67	0	1	0	0	0	0	0	0	0	15094	1827	63	5		5	SPAG16	2	214223022	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08	1592341	214223022	28976351	15	77235	351	2									
SPAG16	79582	broad.mit.edu	37	chr2	214223024	214223024	+	Intron	SNP	G	C	C													tttcctgaatttgaatgttgGcctgccttgctaggttgggg							TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214223024	C	C	214223024	1	2	67	0	1	0	0	0	0	0	0	0	15094	1218	42	4		4	SPAG16	2	214223024	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	2	214223024	28976349	16	77236	351	2									
WDFY1	57590	broad.mit.edu	37	chr2	224783794	224783794	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcagggcctctgggcgcCaggcctctccatctcctgca	10	18	4	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224783794	A	A	224783794	1	1	67	0	1	0	0	0	0	0	0	0	17395	609	21	2		2	WDFY1	2	224783794	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	10560770	224783794	18415579	17	77237											
FHIT	2272	broad.mit.edu	37	chr3	60082206	60082206	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagttctcactctgggtcGcaggtttcatccaggaccag	11	12	3	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60082206	A	A	60082206	1	1	67	0	1	0	0	0	0	0	0	0	5934	1102	38	4		4	FHIT	3	60082206	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08		60082206	137940224	18	77238											
POPDC2	64091	broad.mit.edu	37	chr3	119380033	119380033	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctccctttggggagagcCagacagtgcttctgagtgag	15	9	1	4			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119380033	T	T	119380033	1	4	67	0	1	0	0	0	0	0	0	0	12350	609	21	4		4	POPDC2	3	119380033	5'Flank	SNP	C	TCGA-17-Z038-01A-01W-0746-08	59297827	119380033	78642397	19	77239											
HRG	3273	broad.mit.edu	37	chr3	186386599	186386599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgacgcaaaggtagagCatctgcaaagacagtgagag	12	7	1	4			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186386599	A	A	186386599	1	1	67	0	1	0	0	0	0	0	0	0	7421	725	25	3		3	HRG	3	186386599	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	67006566	186386599	11635831	20	77240											
LPP	4026	broad.mit.edu	37	chr3	188543054	188543054	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctctctctctctctctcTctctgtgtgtgtgtgtgtgt	8	11	6	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	188543054	G	G	188543054	1	3	67	0	1	0	0	0	0	0	0	0	9010	1566	54	5		5	LPP	3	188543054	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08	2156455	188543054	9479376	21	77241											
EVC	2121	broad.mit.edu	37	chr4	5740442	5740442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgggaccacaggcgcgCaccacctcgcccagacaatt	10	17	0	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5740442	A	A	5740442	1	1	67	0	1	0	0	0	0	0	0	0	5327	725	25	3		3	EVC	4	5740442	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08		5740442	185413834	22	77242											
BMPR1B	658	broad.mit.edu	37	chr4	96035766	96035766	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgttgcaataaaacaaatGatacacatcacttatttcct	3	9	1	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96035766	T	T	96035766	1	4	67	0	1	0	0	0	0	0	0	0	1476	1305	45	3		3	BMPR1B	4	96035766	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	90295324	96035766	95118510	23	77243											
C4orf27	54969	broad.mit.edu	37	chr4	170656134	170656134	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaaatacaaaaattagcTgggcatggtggtgggtgcct	12	6	0	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170656134	A	A	170656134	1	1	67	0	1	0	0	0	0	0	0	0	2281	1595	55	5		5	C4orf27	4	170656134	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08	74620368	170656134	20498142	24	77244											
GALNTL6	442117	broad.mit.edu	37	chr4	173232766	173232766	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttgttttctcctgctaggGaaaggtgaacatgggaaacc	11	7	1	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173232766	A	A	173232766	2	1	67	1	0	0	0	0	0	0	0	1	6287	1188	41	4		4	GALNTL6	4	173232766	Silent	SNP	G	TCGA-17-Z038-01A-01W-0746-08	2576632	173232766	17921510	25	77245											
ZDHHC11	79844	broad.mit.edu	37	chr5	808702	808702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgtcacccaggctggaGtgcagtggcacgatcttggt	13	11	3	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	808702	T	T	808702	1	4	67	0	1	0	0	0	0	0	0	0	17727	1044	36	3		3	ZDHHC11	5	808702	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08		808702	180106558	26	77246											
S100Z	170591	broad.mit.edu	37	chr5	76182983	76182983	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctggagtgcagtggcGcaatctcagctcactgcaac	12	13	2	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76182983	A	A	76182983	1	1	67	0	1	0	0	0	0	0	0	0	13903	1102	38	4		4	S100Z	5	76182983	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	75374281	76182983	104732277	27	77247			2	57		2	2	15	N	G_C	2.89432e-05
S100Z	170591	broad.mit.edu	37	chr5	76182997	76182997	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggcgcaatctcagctcaCtgcaacctctgcctccatgg	9	15	3	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76182997	T	T	76182997	1	4	67	0	1	0	0	0	0	0	0	0	13903	580	20	4		4	S100Z	5	76182997	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	14	76182997	104732263	28	77248			2	57		2	2	15	N	G_C	2.89432e-05
SLC12A2	6558	broad.mit.edu	37	chr5	127448478	127448478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaattttaaatgttaagCataattcatatttcttttta	2	3	2	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127448478	A	A	127448478	1	1	67	0	1	0	0	0	0	0	0	0	14496	725	25	3		3	SLC12A2	5	127448478	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	51265481	127448478	53466782	29	77249											
HTR4	3360	broad.mit.edu	37	chr5	147903697	147903697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcctgttggtgaacaacCtggagcttgcatgttgacaa	12	8	0	3			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147903697	A	A	147903697	1	1	67	0	1	0	0	0	0	0	0	0	7519	696	24	2		2	HTR4	5	147903697	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	20455219	147903697	33011563	30	77250											
ODZ2	57451	broad.mit.edu	37	chr5	167109099	167109099	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccttccttccttcctccAtccctccctccctccctccc	0	26	0	0	rs28468469		TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167109099	C	C	167109099	1	2	67	0	1	0	0	0	0	0	0	0	10930	232	8	5		5	ODZ2	5	167109099	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08	19205402	167109099	13806161	31	77251											
LRFN2	57497	broad.mit.edu	37	chr6	40527392	40527392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccagcctctgagactggCtaggaccagagtccctaaag	11	12	1	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40527392	A	A	40527392	1	1	67	0	1	0	0	0	0	0	0	0	9025	812	28	3		3	LRFN2	6	40527392	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08		40527392	130587675	32	77252											
TFAP2B	7021	broad.mit.edu	37	chr6	50811069	50811069	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggggaaggcccaggtagTaaaactggcgacaaggagga	16	7	1	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50811069	A	A	50811069	3	1	67	1	0	0	0	0	1	0	0	0	15911	1635	57	5	1373	5	TFAP2B	6	50811069	Missense_Mutation	SNP	T	TCGA-17-Z038-01A-01W-0746-08	10283677	50811069	120303998	33	77253											
EYS	346007	broad.mit.edu	37	chr6	64456656	64456656	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtatttctgtgggatcAgtggtgatatcccctttatc	10	7	2	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64456656	G	G	64456656	1	3	67	0	1	0	0	0	0	0	0	0	5375	203	7	5		5	EYS	6	64456656	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08	13645587	64456656	106658411	34	77254			3	58		2	2	30	N	C_A	5.995283e-05
EYS	346007	broad.mit.edu	37	chr6	64456685	64456685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccctttatcattttttaCtgtgtctatttgattcttct	3	9	4	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64456685	T	T	64456685	1	4	67	0	1	0	0	0	0	0	0	0	5375	580	20	4		4	EYS	6	64456685	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	29	64456685	106658382	35	77255			3	58		2	2	30	N	C_A	5.995283e-05
EYS	346007	broad.mit.edu	37	chr6	66196817	66196817	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctttcctaggtattttattCtctttgtagcaattgtgaat	6	6	2	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66196817	T	T	66196817	1	4	67	0	1	0	0	0	0	0	0	0	5375	928	32	4		4	EYS	6	66196817	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	1740132	66196817	104918250	36	77256			4	59	1740132	2	2	13	N	C_A	2.48085e-05
EYS	346007	broad.mit.edu	37	chr6	66196829	66196829	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttattctctttgtagcaAttgtgaatgggagttcactc	8	6	2	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66196829	G	G	66196829	1	3	67	0	1	0	0	0	0	0	0	0	5375	116	4	5		5	EYS	6	66196829	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08	12	66196829	104918238	37	77257			4	59	1740132	2	2	13	N	C_A	2.48085e-05
UTRN	7402	broad.mit.edu	37	chr6	144732063	144732063	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctataaacatgcatgtgcaAgcatctttttggtataatgg	9	6	1	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144732063	T	T	144732063	1	4	67	0	1	0	0	0	0	0	0	0	17230	87	3	5		5	UTRN	6	144732063	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08	78535234	144732063	26383004	38	77258											
MACC1	346389	broad.mit.edu	37	chr7	20253885	20253885	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccaaccttattccagcaTtatcatccaaaatcccctag	2	15	1	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20253885	C	C	20253885	1	2	67	0	1	0	0	0	0	0	0	0	9231	1508	52	5		5	MACC1	7	20253885	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08		20253885	138884778	39	77259											
AUTS2	26053	broad.mit.edu	37	chr7	69379360	69379360	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagacacacacacacacacaCacacacacacacacacacac	1	20	0	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69379360	G	G	69379360	1	3	67	0	1	0	0	0	0	0	0	0	1230	493	17	4		4	AUTS2	7	69379360	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	49125475	69379360	89759303	40	77260											
EPHB6	2051	broad.mit.edu	37	chr7	142567794	142567794	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacattctaggacctccattCtctactccgtttgtattcta	4	12	3	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142567794	A	A	142567794	1	1	67	0	1	0	0	0	0	0	0	0	5220	928	32	3		3	EPHB6	7	142567794	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	73188434	142567794	16570869	41	77261											
ADAM18	8749	broad.mit.edu	37	chr8	39440414	39440414	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcaccatgttggccaggCtggtctcgaactcctgacct	10	13	2	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39440414	A	A	39440414	1	1	67	0	1	0	0	0	0	0	0	0	239	812	28	3		3	ADAM18	8	39440414	5'Flank	SNP	C	TCGA-17-Z038-01A-01W-0746-08		39440414	106923608	42	77262											
HOOK3	84376	broad.mit.edu	37	chr8	42819280	42819280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatggcgtgaacccaggagGcggagctttcagtgagccga	16	9	1	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42819280	T	T	42819280	1	4	67	0	1	0	0	0	0	0	0	0	7351	1218	42	3		3	HOOK3	8	42819280	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	3378866	42819280	103544742	43	77263											
TG	7038	broad.mit.edu	37	chr8	133945571	133945571	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttgtgtgtgtctgtgtgtCtttaggtgtatatttgtgtg	13	2	2	0	rs73349624	by1000genomes	TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133945571	A	A	133945571	1	1	67	0	1	0	0	0	0	0	0	0	15936	928	32	3		3	TG	8	133945571	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	91126291	133945571	12418451	44	77264			5	60		3	2	27	N	G_C	5.375098e-05
TG	7038	broad.mit.edu	37	chr8	133945593	133945593	+	Intron	SNP	C	G	G													ttaggtgtatatttgtgtgtCtttgtgtgtttggaggtgtg					rs113674111	by1000genomes	TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133945593	G	G	133945593	1	3	67	0	1	0	0	0	0	0	0	0	15936	928	32	4		4	TG	8	133945593	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	22	133945593	12418429	45	77265	352	2	5	60		3	2	27	N	G_C	5.375098e-05
TG	7038	broad.mit.edu	37	chr8	133945597	133945597	+	Intron	SNP	G	T	T													gtgtatatttgtgtgtctttGtgtgtttggaggtgtgtgtg					rs111736580		TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133945597	T	T	133945597	1	4	67	0	1	0	0	0	0	0	0	0	15936	1392	48	3		3	TG	8	133945597	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	4	133945597	12418425	46	77266	352	2	5	60		3	2	27	N	G_C	5.375098e-05
TRPM3	80036	broad.mit.edu	37	chr9	73194904	73194904	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catttcaacgccccttccctGaatgctgatttcagctattt	5	13	2	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73194904	C	C	73194904	1	2	67	0	1	0	0	0	0	0	0	0	16712	1305	45	4		4	TRPM3	9	73194904	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08		73194904	68018527	47	77267											
SLC28A3	64078	broad.mit.edu	37	chr9	86901331	86901331	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcctccttcctcagcctcCtgaatagcatgtgtgccacc	7	16	1	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86901331	T	T	86901331	1	4	67	0	1	0	0	0	0	0	0	0	14647	696	24	4		4	SLC28A3	9	86901331	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	13706427	86901331	54312100	48	77268											
SPIN1	10927	broad.mit.edu	37	chr9	91047195	91047195	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcactgcaacctccacctCccgggctcaagcaattgtcc	7	18	2	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91047195	A	A	91047195	1	1	67	0	1	0	0	0	0	0	0	0	15170	870	30	3		3	SPIN1	9	91047195	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	4145864	91047195	50166236	49	77269											
C9orf3	84909	broad.mit.edu	37	chr9	97611201	97611201	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacgtagctgggattacaGgcatgcatcaccacacccag	9	15	1	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97611201	A	A	97611201	1	1	67	0	1	0	0	0	0	0	0	0	2503	1015	35	4		4	C9orf3	9	97611201	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	6564006	97611201	43602230	50	77270											
DEC1	50514	broad.mit.edu	37	chr9	117942160	117942160	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagcaggaggacaggggattGatctcccaagggaggtaccc	16	9	1	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117942160	C	C	117942160	1	2	67	0	1	0	0	0	0	0	0	0	4414	1305	45	4		4	DEC1	9	117942160	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	20330959	117942160	23271271	51	77271											
ASTN2	23245	broad.mit.edu	37	chr9	120112867	120112867	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagaaaagaaaagaaaAaagaaaagaaaagaaaaatc	7	1	0	7			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120112867	C	C	120112867	1	2	67	0	1	0	0	0	0	0	0	0	1069	29	1	5		5	ASTN2	9	120112867	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08	2170707	120112867	21100564	52	77272											
TAF3	83860	broad.mit.edu	37	chr10	8054122	8054123	+	Intron	INS	-	A	A													tgcactccagcctgggtgacINSagagtgaaaccctgtcttta							TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8054123	A	A	8054122	6	5	67	0	1	1	1	0	0	0	0	0	15644	493	17	0		0	TAF3	10	8054122	Intron	INS	-	TCGA-17-Z038-01A-01W-0746-08		8054122	127480625	53	77273											
BTRC	8945	broad.mit.edu	37	chr10	103308704	103308704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtaatcccaggtactcaGgagactgaggcaggagaatc	12	10	1	3			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103308704	T	T	103308704	1	4	67	0	1	0	0	0	0	0	0	0	1579	1015	35	2		2	BTRC	10	103308704	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08	95254582	103308704	32226043	54	77274											
AS3MT	57412	broad.mit.edu	37	chr10	104616031	104616031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatcatgtgtctgtgggcTgggcgcagtggctcatgcct	14	10	3	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104616031	C	C	104616031	1	2	67	0	1	0	0	0	0	0	0	0	1009	1595	55	5		5	AS3MT	10	104616031	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08	1307327	104616031	30918716	55	77275											
C10orf90	118611	broad.mit.edu	37	chr10	128190659	128190659	+	Intron	DEL	A	-	-													accacacacacacaccacacAaccacacacacaccacacac							TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128190659	-	-	128190659	6	5	67	0	1	1	0	1	0	0	0	0	1634	145	5	0		0	C10orf90	10	128190659	Intron	DEL	A	TCGA-17-Z038-01A-01W-0746-08	23574628	128190659	7344088	56	77276											
DLG2	1740	broad.mit.edu	37	chr11	83771198	83771198	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccccgtctctaccaaaaAtacaaaaattagctgggcat	5	11	1	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83771198	C	C	83771198	1	2	67	0	1	0	0	0	0	0	0	0	4595	116	4	5		5	DLG2	11	83771198	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08		83771198	51235318	57	77277											
TMPRSS5	80975	broad.mit.edu	37	chr11	113569957	113569957	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctctctctctctctctctCtctctctctctctctctctc	0	21	10	0			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113569957	G	G	113569957	1	3	67	0	1	0	0	0	0	0	0	0	16373	928	32	4		4	TMPRSS5	11	113569957	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	29798759	113569957	21436559	58	77278											
HECTD1	25831	broad.mit.edu	37	chr14	31571984	31571984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccttatcagtggatatgCattctggtaactgtgagaca	10	8	2	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31571984	A	A	31571984	1	1	67	0	1	0	0	0	0	0	0	0	7106	725	25	3		3	HECTD1	14	31571984	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08		31571984	75777556	59	77279											
AK7	122481	broad.mit.edu	37	chr14	96881049	96881049	+	Intron	DEL	C	-	-													ccctaaaacagcccaagaaaCaggccaagaagacggatgga							TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96881049	-	-	96881049	6	5	67	0	1	1	0	1	0	0	0	0	444	493	17	0		0	AK7	14	96881049	Intron	DEL	C	TCGA-17-Z038-01A-01W-0746-08	65309065	96881049	10468491	60	77280											
MYH11	4629	broad.mit.edu	37	chr16	15807871	15807871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtgagggctcctaggaGtactggttggcccggtagaa	15	7	0	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15807871	T	T	15807871	1	4	67	0	1	0	0	0	0	0	0	0	10125	1044	36	3		3	MYH11	16	15807871	Intron	SNP	G	TCGA-17-Z038-01A-01W-0746-08		15807871	74546882	61	77281											
RICH2	9912	broad.mit.edu	37	chr17	12736409	12736409	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcaaagctagggagaCtatcctagctagaacagctt	10	10	1	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12736409	T	T	12736409	1	4	67	0	1	0	0	0	0	0	0	0	13466	580	20	4		4	RICH2	17	12736409	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08		12736409	68458801	62	77282											
ALPK2	115701	broad.mit.edu	37	chr18	56268268	56268268	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggccgaggtgggcagatcAcctgaggtcaggagttcgag	18	8	2	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56268268	G	G	56268268	1	3	67	0	1	0	0	0	0	0	0	0	545	174	6	5		5	ALPK2	18	56268268	Intron	SNP	A	TCGA-17-Z038-01A-01W-0746-08		56268268	21808980	63	77283											
ZNF234	10780	broad.mit.edu	37	chr19	44662378	44662378	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaatttatttgatttgTaacgctccacatttccacct	4	10	0	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44662378	A	A	44662378	1	1	67	0	1	0	0	0	0	0	0	0	17913	1653	57	5		5	ZNF234	19	44662378	3'UTR	SNP	T	TCGA-17-Z038-01A-01W-0746-08		44662378	14466605	64	77284											
ZNF549	256051	broad.mit.edu	37	chr19	58046787	58046787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacataggcgttgtggttgCcaggcctgggttttttctgc	14	8	1	1			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58046787	A	A	58046787	1	1	67	0	1	0	0	0	0	0	0	0	18108	754	26	3		3	ZNF549	19	58046787	Intron	SNP	C	TCGA-17-Z038-01A-01W-0746-08	13384409	58046787	1082196	65	77285											
DDT	1652	broad.mit.edu	37	chr22	24249494	24249494	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctttgttaaacagatgcTtgaaggcagcatgctcgtta	11	7	0	2			TCGA-17-Z038-01A-01W-0746-08	TCGA-17-Z038-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24249494	C	C	24249494	1	2	67	0	1	0	0	0	0	0	0	0	4372	1624	56	5		5	DDT	22	24249494	Intron	SNP	T	TCGA-17-Z038-01A-01W-0746-08		24249494	27055072	66	77286											
DAB1	1600	broad.mit.edu	37	chr1	58504251	58504251	+	Intron	DEL	T	-	-													acctgggtttaataagctccTttttttaccaaatccaaagc					rs67264062		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58504251	-	-	58504251	6	5	68	0	1	1	0	1	0	0	0	0	4250	1624	56	0		0	DAB1	1	58504251	Intron	DEL	T	TCGA-17-Z039-01A-01W-0746-08		58504251	190746370	1	77287											
PTGFRN	5738	broad.mit.edu	37	chr1	117502588	117502588	+	Intron	DEL	A	-	-													tggggacagtaagactgtccAaaaaaaaaacaaaagaagaa							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117502588	-	-	117502588	6	5	68	0	1	1	0	1	0	0	0	0	12856	145	5	0		0	PTGFRN	1	117502588	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08	58998337	117502588	131748033	2	77288											
TARS2	80222	broad.mit.edu	37	chr1	150459693	150459693	+	5'Flank	DEL	A	-	-													aaacgccacgggtctgggggAatagcgagggtgtgttacat					rs3840449		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150459693	-	-	150459693	6	5	68	0	1	1	0	1	0	0	0	0	15679	261	9	0		0	TARS2	1	150459693	5'Flank	DEL	A	TCGA-17-Z039-01A-01W-0746-08	32957105	150459693	98790928	3	77289											
CCDC19	25790	broad.mit.edu	37	chr1	159895018	159895022	+	Intron	DEL	CTATG	-	-													gctccagacggacgccctgtCtatgcatgggctaacctcgc					rs5778138		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159895022	-	-	159895018	6	5	68	0	1	1	0	1	0	0	0	0	2822	928	32	0		0	CCDC19	1	159895018	Intron	DEL	CTATG	TCGA-17-Z039-01A-01W-0746-08	9435325	159895018	89355603	4	77290											
PBX1	5087	broad.mit.edu	37	chr1	164788050	164788050	+	Intron	DEL	A	-	-													aagtggtccttctatgggggAaaaaaagtcctctcttctgc					rs3835582		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164788050	-	-	164788050	6	5	68	0	1	1	0	1	0	0	0	0	11586	261	9	0		0	PBX1	1	164788050	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08	4893032	164788050	84462571	5	77291											
PBX1	5087	broad.mit.edu	37	chr1	164795150	164795150	+	Intron	DEL	A	-	-													agctgtgcatgtagcaacatAacattgttgtaactggattc					rs34668642		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164795150	-	-	164795150	6	5	68	0	1	1	0	1	0	0	0	0	11586	377	13	0		0	PBX1	1	164795150	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08	7100	164795150	84455471	6	77292											
LMX1A	4009	broad.mit.edu	37	chr1	165266718	165266719	+	Intron	DEL	AA	-	-													aagttgaaacagtctaaaacAaagtctctggctgtcctcag							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165266719	-	-	165266718	6	5	68	0	1	1	0	1	0	0	0	0	8935	145	5	0		0	LMX1A	1	165266718	Intron	DEL	AA	TCGA-17-Z039-01A-01W-0746-08	471568	165266718	83983903	7	77293											
RABGAP1L	9910	broad.mit.edu	37	chr1	174377868	174377868	+	Intron	DEL	T	-	-													agccttgtgagcatctgttgTttttttttgactttttagta					rs143176823		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	174377868	-	-	174377868	6	5	68	0	1	1	0	1	0	0	0	0	13073	1740	60	0		0	RABGAP1L	1	174377868	Intron	DEL	T	TCGA-17-Z039-01A-01W-0746-08	9111150	174377868	74872753	8	77294											
ASTN1	460	broad.mit.edu	37	chr1	177080573	177080573	+	Intron	DEL	C	-	-													ttcaccaggtctggggtggaCccttagattctgcatttcta					rs80140967		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	177080573	-	-	177080573	6	5	68	0	1	1	0	1	0	0	0	0	1068	522	18	0		0	ASTN1	1	177080573	Intron	DEL	C	TCGA-17-Z039-01A-01W-0746-08	2702705	177080573	72170048	9	77295											
ACBD6	84320	broad.mit.edu	37	chr1	180332822	180332833	+	Intron	DEL	AGCAGGAGCAGG	-	-													taaccttgccaatcagagtaAgcaggagcaggagcaggagc					rs71926788		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180332833	-	-	180332822	6	5	68	0	1	1	0	1	0	0	0	0	126	87	3	0		0	ACBD6	1	180332822	Intron	DEL	AGCAGGAGCAGG	TCGA-17-Z039-01A-01W-0746-08	3252249	180332822	68917799	10	77296											
IL19	29949	broad.mit.edu	37	chr1	206981846	206981849	+	Intron	DEL	GTGT	-	-													gaagggaattgtgtgtgtgcGtgtgtgtgtgtgtgtgtgtg					rs111662626		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	206981849	-	-	206981846	6	5	68	0	1	1	0	1	0	0	0	0	7719	1160	40	0		0	IL19	1	206981846	Intron	DEL	GTGT	TCGA-17-Z039-01A-01W-0746-08	26649024	206981846	42268775	11	77297											
PCNXL2	80003	broad.mit.edu	37	chr1	233135868	233135868	+	Intron	DEL	C	-	-													cctgccaggggaacacagcaCccagcctggcaccatgccct							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	233135868	-	-	233135868	6	5	68	0	1	1	0	1	0	0	0	0	11686	522	18	0		0	PCNXL2	1	233135868	Intron	DEL	C	TCGA-17-Z039-01A-01W-0746-08	26154022	233135868	16114753	12	77298											
NBAS	51594	broad.mit.edu	37	chr2	15559459	15559460	+	Intron	INS	-	TATG	TATG													ttcatattcatacatatataINStgtgtgtgtgtgtgtgtgtg					rs143392560	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TATG	15559460	TATG	TATG	15559459	6	5	68	0	1	1	1	0	0	0	0	0	10280	464	16	0		0	NBAS	2	15559459	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		15559459	227639914	13	77299											
IWS1	55677	broad.mit.edu	37	chr2	128255591	128255591	+	Intron	DEL	A	-	-													tgacaacaccgtaaatggagAaaaacaggaatagacccact					rs66528554		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128255591	-	-	128255591	6	5	68	0	1	1	0	1	0	0	0	0	8001	261	9	0		0	IWS1	2	128255591	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08	112696132	128255591	114943782	14	77300											
MED12L	116931	broad.mit.edu	37	chr3	151067041	151067042	+	Intron	INS	-	A	A													aatttctttcccacgtggggINSaaaaaaatggtgcttggatt					rs139597859	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151067042	A	A	151067041	6	5	68	0	1	1	1	0	0	0	0	0	9522	1189	41	0		0	MED12L	3	151067041	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		151067041	46955389	15	77301											
SLC10A7	84068	broad.mit.edu	37	chr4	147277828	147277829	+	Intron	INS	-	A	A													gatattatacttatttgcttINSttgtctatttacacaagtgt					rs146175473	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147277829	A	A	147277828	6	5	68	0	1	1	1	0	0	0	0	0	14492	1856	64	0		0	SLC10A7	4	147277828	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		147277828	43876448	16	77302											
PDCD6	10016	broad.mit.edu	37	chr5	286209	286210	+	Intron	INS	-	G	G													gccatgcagctgaggacccaINSggggggagctgatgttctcc					rs138284842	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	286210	G	G	286209	6	5	68	0	1	1	1	0	0	0	0	0	11717	203	7	0		0	PDCD6	5	286209	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		286209	180629051	17	77303											
CDK7	1022	broad.mit.edu	37	chr5	68559082	68559082	+	Intron	DEL	T	-	-													gggaatccttctgaagctagTttttttctctccatattctg							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68559082	-	-	68559082	6	5	68	0	1	1	0	1	0	0	0	0	3179	1740	60	0		0	CDK7	5	68559082	Intron	DEL	T	TCGA-17-Z039-01A-01W-0746-08	68272873	68559082	112356178	18	77304											
RGNEF	64283	broad.mit.edu	37	chr5	73093114	73093115	+	Intron	INS	-	AC	AC													agattttcaaagaacctgagINSagagaaggggacagcaagct					rs5868695		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	73093115	AC	AC	73093114	6	5	68	0	1	1	1	0	0	0	0	0	13391	957	33	0		0	RGNEF	5	73093114	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	4534032	73093114	107822146	19	77305											
YTHDC2	64848	broad.mit.edu	37	chr5	112910506	112910508	+	Intron	DEL	CTA	-	-													ggccagagtatgtaaaactcCtacgtttctgtgtgtgcctg					rs111839856		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112910508	-	-	112910506	6	5	68	0	1	1	0	1	0	0	0	0	17624	696	24	0		0	YTHDC2	5	112910506	Intron	DEL	CTA	TCGA-17-Z039-01A-01W-0746-08	39817392	112910506	68004754	20	77306											
NXPH1	30010	broad.mit.edu	37	chr7	8655912	8655913	+	Intron	INS	-	A	A													tttgatcttgttctctgcccINSaaacactttccccaggtacc					rs141216333	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8655913	A	A	8655912	6	5	68	0	1	1	1	0	0	0	0	0	10885	609	21	0		0	NXPH1	7	8655912	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		8655912	150482751	21	77307											
ELMO1	9844	broad.mit.edu	37	chr7	36945908	36945909	+	Intron	DEL	TA	-	-													tgatatatacaagaaaatatTatgttttcacccttttagca							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36945909	-	-	36945908	6	5	68	0	1	1	0	1	0	0	0	0	5107	1769	61	0		0	ELMO1	7	36945908	Intron	DEL	TA	TCGA-17-Z039-01A-01W-0746-08	28289996	36945908	122192755	22	77308											
TNS3	64759	broad.mit.edu	37	chr7	47514013	47514014	+	Intron	DEL	AC	-	-													ataagcaacacatacacaaaAcacaacacaaacaacacaca							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47514014	-	-	47514013	6	5	68	0	1	1	0	1	0	0	0	0	16467	58	2	0		0	TNS3	7	47514013	Intron	DEL	AC	TCGA-17-Z039-01A-01W-0746-08	10568105	47514013	111624650	23	77309											
LHFPL3	375612	broad.mit.edu	37	chr7	104455072	104455072	+	Intron	DEL	C	-	-													acccaggaacctgtctgcctCcctctgcctttcatgacatc					rs113443553		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104455072	-	-	104455072	6	5	68	0	1	1	0	1	0	0	0	0	8838	870	30	0		0	LHFPL3	7	104455072	Intron	DEL	C	TCGA-17-Z039-01A-01W-0746-08	56941059	104455072	54683591	24	77310											
CAV1	857	broad.mit.edu	37	chr7	116089304	116089305	+	Intron	INS	-	A	A													tagagaaaacatagaatcacINSaaaaaagaaagaactggaga					rs142304510	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116089305	A	A	116089304	6	5	68	0	1	1	1	0	0	0	0	0	2719	493	17	0		0	CAV1	7	116089304	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	11634232	116089304	43049359	25	77311											
PIWIL2	55124	broad.mit.edu	37	chr8	22172344	22172345	+	Intron	INS	-	TG	TG													gggtttgtggtgtgtgtgtaINStgtgtgtgtgtgtgtgttgt							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	22172345	TG	TG	22172344	6	5	68	0	1	1	1	0	0	0	0	0	12053	464	16	0		0	PIWIL2	8	22172344	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		22172344	124191678	26	77312											
KIAA1432	57589	broad.mit.edu	37	chr9	5766481	5766481	+	Intron	DEL	C	-	-													cactgcaccatatttgttgtCttttatccctcaccccctcc					rs2381370		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5766481	-	-	5766481	6	5	68	0	1	1	0	1	0	0	0	0	8303	928	32	0		0	KIAA1432	9	5766481	Intron	DEL	C	TCGA-17-Z039-01A-01W-0746-08		5766481	135446950	27	77313											
DENND1A	57706	broad.mit.edu	37	chr9	126552263	126552264	+	Intron	DEL	TG	-	-													aaactgggggagggggaattTgtgtgtgtgtgtgtgtgtgt					rs112415430		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126552264	-	-	126552263	6	5	68	0	1	1	0	1	0	0	0	0	4466	1827	63	0		0	DENND1A	9	126552263	Intron	DEL	TG	TCGA-17-Z039-01A-01W-0746-08	120785782	126552263	14661168	28	77314											
DIP2C	22982	broad.mit.edu	37	chr10	350697	350698	+	Intron	INS	-	CACT	CACT													atacttacacacacataaaaINScagtacactacactcacaca					rs71482858		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CACT	350698	CACT	CACT	350697	6	5	68	0	1	1	1	0	0	0	0	0	4569	58	2	0		0	DIP2C	10	350697	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		350697	135184050	29	77315											
ANXA8	653145	broad.mit.edu	37	chr10	47145533	47145534	+	Intron	DEL	AC	-	-													ttgtagtggaaataaataaaAcagggaatagaaaaaacact					rs76729045	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47145534	-	-	47145533	6	5	68	0	1	1	0	1	0	0	0	0	724	58	2	0		0	ANXA8	10	47145533	Intron	DEL	AC	TCGA-17-Z039-01A-01W-0746-08	46794836	47145533	88389214	30	77316											
RNLS	55328	broad.mit.edu	37	chr10	90217374	90217374	+	Intron	DEL	T	-	-													acaaggtaaaggatttagggTttatgaggtttctgttgttg							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90217374	-	-	90217374	6	5	68	0	1	1	0	1	0	0	0	0	13616	1740	60	0		0	RNLS	10	90217374	Intron	DEL	T	TCGA-17-Z039-01A-01W-0746-08	43071841	90217374	45317373	31	77317											
ANO5	203859	broad.mit.edu	37	chr11	22248679	22248680	+	Intron	DEL	TA	-	-													tatatacatgtttttgtaacTatatgttttgtgaattttgt					rs34515704		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22248680	-	-	22248679	6	5	68	0	1	1	0	1	0	0	0	0	700	1537	53	0		0	ANO5	11	22248679	Intron	DEL	TA	TCGA-17-Z039-01A-01W-0746-08		22248679	112757837	32	77318											
KIAA1377	57562	broad.mit.edu	37	chr11	101824751	101824752	+	Intron	INS	-	TTTG	TTTG													taattgaattattttcctttINStttgtttgtttgtttgtttg					rs147673134	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTTG	101824752	TTTG	TTTG	101824751	6	5	68	0	1	1	1	0	0	0	0	0	8297	1856	64	0		0	KIAA1377	11	101824751	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	79576072	101824751	33181765	33	77319											
RAP1B	5908	broad.mit.edu	37	chr12	69050761	69050762	+	Intron	INS	-	C	C													attttattctcattccttagINSctgaacaattctgggcatta					rs150615716	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69050762	C	C	69050761	6	5	68	0	1	1	1	0	0	0	0	0	13144	986	34	0		0	RAP1B	12	69050761	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		69050761	64801134	34	77320											
FAM155A	728215	broad.mit.edu	37	chr13	108312689	108312689	+	Intron	DEL	A	-	-													gccactcgggaggctgaggcAggagaattgcttgaacctgg							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108312689	-	-	108312689	6	5	68	0	1	1	0	1	0	0	0	0	5511	203	7	0		0	FAM155A	13	108312689	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08		108312689	6857189	35	77321											
SPTB	6710	broad.mit.edu	37	chr14	65232938	65232939	+	Intron	DEL	TG	-	-													gtggttgtgcgtgaggtgtcTgtatatatgggggtgtgtgg					rs66712620		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65232939	-	-	65232938	6	5	68	0	1	1	0	1	0	0	0	0	15236	1595	55	0		0	SPTB	14	65232938	Intron	DEL	TG	TCGA-17-Z039-01A-01W-0746-08		65232938	42116602	36	77322											
COX16	51241	broad.mit.edu	37	chr14	70806612	70806614	+	Intron	DEL	CTT	-	-													tacagaccttaaccatcctcCttcttttaacctcattccct					rs34869883		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70806614	-	-	70806612	6	5	68	0	1	1	0	1	0	0	0	0	3797	696	24	0		0	COX16	14	70806612	Intron	DEL	CTT	TCGA-17-Z039-01A-01W-0746-08	5573674	70806612	36542928	37	77323											
ZNF410	57862	broad.mit.edu	37	chr14	74379014	74379014	+	Intron	DEL	A	-	-													acccgagtagctggtattacAggcgcgtgccaccacgcccg					rs113148965		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74379014	-	-	74379014	6	5	68	0	1	1	0	1	0	0	0	0	18017	203	7	0		0	ZNF410	14	74379014	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08	3572402	74379014	32970526	38	77324											
C14orf145	145508	broad.mit.edu	37	chr14	81127543	81127544	+	Intron	INS	-	C	C													agtttaaaataaaacgtgctINScccccccacagaaaaatcaa					rs146756305	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81127544	C	C	81127543	6	5	68	0	1	1	1	0	0	0	0	0	1762	1566	54	0		0	C14orf145	14	81127543	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	6748529	81127543	26221997	39	77325											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84570589	84570590	+	Intron	DEL	GA	-	-													gaaaagggtttgaggcacttGagagagagagtgtgtagttg					rs146857820		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84570590	-	-	84570589	6	5	68	0	1	1	0	1	0	0	0	0	276	1305	45	0		0	ADAMTSL3	15	84570589	Intron	DEL	GA	TCGA-17-Z039-01A-01W-0746-08		84570589	17960803	40	77326											
POLG	5428	broad.mit.edu	37	chr15	89868503	89868508	+	Intron	DEL	GAGAGA	-	-													gagagagtgagtgagtgagtGagagagagagaaagagagag					rs71149293	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89868508	-	-	89868503	6	5	68	0	1	1	0	1	0	0	0	0	12295	1305	45	0		0	POLG	15	89868503	Intron	DEL	GAGAGA	TCGA-17-Z039-01A-01W-0746-08	5297914	89868503	12662889	41	77327											
GRIN2A	2903	broad.mit.edu	37	chr16	9852833	9852836	+	3'UTR	DEL	TTTC	-	-													tccacctactcaaacttcttTttctttgagtccaatcatgt							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9852836	-	-	9852833	6	5	68	0	1	1	0	1	0	0	0	0	6845	1856	64	0		0	GRIN2A	16	9852833	3'UTR	DEL	TTTC	TCGA-17-Z039-01A-01W-0746-08		9852833	80501920	42	77328											
ARSG	22901	broad.mit.edu	37	chr17	66370486	66370494	+	Intron	DEL	CAGAAGGTG	-	-													aagccccaaggctaaaagtcCagaaggtgcagaaggtgtgg					rs113323367		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66370494	-	-	66370486	6	5	68	0	1	1	0	1	0	0	0	0	996	609	21	0		0	ARSG	17	66370486	Intron	DEL	CAGAAGGTG	TCGA-17-Z039-01A-01W-0746-08		66370486	14824724	43	77329											
RASIP1	54922	broad.mit.edu	37	chr19	49232029	49232030	+	Intron	INS	-	CAAA	CAAA													ctccgtctcaaaaacaaaagINScaaacaaacaaacaaacaaa					rs147766034	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CAAA	49232030	CAAA	CAAA	49232029	6	5	68	0	1	1	1	0	0	0	0	0	13186	986	34	0		0	RASIP1	19	49232029	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		49232029	9896954	44	77330											
BCAS4	55653	broad.mit.edu	37	chr20	49492868	49492875	+	Intron	DEL	CGGCTTTG	-	-													ccttggtccctttgggtggcCggctttggctgtcacaggca					rs57778780		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49492875	-	-	49492868	6	5	68	0	1	1	0	1	0	0	0	0	1358	667	23	0		0	BCAS4	20	49492868	Intron	DEL	CGGCTTTG	TCGA-17-Z039-01A-01W-0746-08		49492868	13532652	45	77331											
ADNP	23394	broad.mit.edu	37	chr20	49511023	49511025	+	In_Frame_Del	DEL	GCA	-	-													gaggaaaatggacaagcgctGcagcagaaaggttttgtccg							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49511025	-	-	49511023	7	5	68	1	0	1	0	1	0	0	0	0	323	1311	46	0	3084	0	ADNP	20	49511023	In_Frame_Del	DEL	GCA	TCGA-17-Z039-01A-01W-0746-08	18155	49511023	13514497	46	77332											
NFATC2	4773	broad.mit.edu	37	chr20	50009093	50009094	+	Intron	INS	-	T	T													atgaggcatgctccctaaggINStatgtctacaccttcagttt					rs150072066	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50009094	T	T	50009093	6	5	68	0	1	1	1	0	0	0	0	0	10457	1276	44	0		0	NFATC2	20	50009093	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	498070	50009093	13016427	47	77333											
NFATC2	4773	broad.mit.edu	37	chr20	50011715	50011717	+	Intron	DEL	TAT	-	-													ccctatacagtgccagggacTattatttaattctcacactg							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50011717	-	-	50011715	6	5	68	0	1	1	0	1	0	0	0	0	10457	1537	53	0		0	NFATC2	20	50011715	Intron	DEL	TAT	TCGA-17-Z039-01A-01W-0746-08	2622	50011715	13013805	48	77334											
APCDD1L	164284	broad.mit.edu	37	chr20	57043557	57043558	+	Intron	INS	-	AG	AG													ggtggacggtggatgaagtcINSgggggaaaaatagcaggcac					rs113986879		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	57043558	AG	AG	57043557	6	5	68	0	1	1	1	0	0	0	0	0	768	899	31	0		0	APCDD1L	20	57043557	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	7031842	57043557	5981963	49	77335											
TAF4	6874	broad.mit.edu	37	chr20	60598203	60598204	+	Intron	INS	-	A	A													agattaaccaacacaactgtINSaaaaaaaggtcaggctggcc					rs150501170	by1000genomes	TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60598204	A	A	60598203	6	5	68	0	1	1	1	0	0	0	0	0	15645	1653	57	0		0	TAF4	20	60598203	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	3554646	60598203	2427317	50	77336											
PIR	8544	broad.mit.edu	37	chrX	15408516	15408517	+	Intron	INS	-	A	A													aaaaatattttctgtgcaacINSactcaatatagacatgttta					rs3833896		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15408517	A	A	15408516	6	5	68	0	1	1	1	0	0	0	0	0	12039	493	17	0		0	PIR	23	15408516	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08		15408516	139862044	51	77337											
POLA1	5422	broad.mit.edu	37	chrX	24792326	24792327	+	Intron	DEL	CT	-	-													taatccttgcccactctgccCtctctgcttcagtttctttc							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24792327	-	-	24792326	6	5	68	0	1	1	0	1	0	0	0	0	12282	696	24	0		0	POLA1	23	24792326	Intron	DEL	CT	TCGA-17-Z039-01A-01W-0746-08	9383810	24792326	130478234	52	77338											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29064150	29064152	+	Intron	DEL	CTC	-	-													tttttcttcttcctcttcttCtcctcctcctcctcctcctc							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29064152	-	-	29064150	6	5	68	0	1	1	0	1	0	0	0	0	7731	928	32	0		0	IL1RAPL1	23	29064150	Intron	DEL	CTC	TCGA-17-Z039-01A-01W-0746-08	4271824	29064150	126206410	53	77339											
PIN4	5303	broad.mit.edu	37	chrX	71407866	71407867	+	Intron	INS	-	AG	AG													tcaatgaacctatgccccacINSagagagagagagagatgaga					rs34336014		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	71407867	AG	AG	71407866	6	5	68	0	1	1	1	0	0	0	0	0	12026	493	17	0		0	PIN4	23	71407866	Intron	INS	-	TCGA-17-Z039-01A-01W-0746-08	42343716	71407866	83862694	54	77340											
TAF7L	54457	broad.mit.edu	37	chrX	100528576	100528576	+	Intron	DEL	A	-	-													gacagagcaagactccatttAaaaaaaaaaaagtttaaatt							TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100528576	-	-	100528576	6	5	68	0	1	1	0	1	0	0	0	0	15652	377	13	0		0	TAF7L	23	100528576	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08	29120710	100528576	54741984	55	77341											
COL4A6	1288	broad.mit.edu	37	chrX	107550341	107550341	+	Intron	DEL	A	-	-													gtttgatcaagtggcaggggAaaaaaaataccagggaagag					rs35142590		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107550341	-	-	107550341	6	5	68	0	1	1	0	1	0	0	0	0	3727	261	9	0		0	COL4A6	23	107550341	Intron	DEL	A	TCGA-17-Z039-01A-01W-0746-08	7021765	107550341	47720219	56	77342											
GABRQ	55879	broad.mit.edu	37	chrX	151812368	151812371	+	Intron	DEL	TCAC	-	-													acatgcacatatgcacgcgtTcactcaaactcaaacatgct					rs113769150		TCGA-17-Z039-01A-01W-0746-08	TCGA-17-Z039-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151812371	-	-	151812368	6	5	68	0	1	1	0	1	0	0	0	0	6235	1798	62	0		0	GABRQ	23	151812368	Intron	DEL	TCAC	TCGA-17-Z039-01A-01W-0746-08	44262027	151812368	3458192	57	77343											
CDK11B	984	broad.mit.edu	37	chr1	1588717	1588717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctcacctgcgacatttGgaagtacaaaagaacttcac	9	10	2	1	rs61774959	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1588717	A	A	1588717	1	1	69	0	1	0	0	0	0	0	0	0	3157	1363	47	4		4	CDK11B	1	1588717	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08		1588717	247661904	1	77344											
CAMTA1	23261	broad.mit.edu	37	chr1	7163371	7163374	+	Intron	DEL	GTCT	-	-													gatgggaggactgaggcaccGtctgtctgagaggcacatat					rs142544001		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7163374	-	-	7163371	6	5	69	0	1	1	0	1	0	0	0	0	2639	1160	40	0		0	CAMTA1	1	7163371	Intron	DEL	GTCT	TCGA-17-Z040-01A-01W-0746-08	5574654	7163371	242087250	2	77345											
EPHA8	2046	broad.mit.edu	37	chr1	22924648	22924648	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctactgcccgcccaggccgCctggcaatgattgtgactga	11	15	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22924648	T	T	22924648	2	4	69	1	0	0	0	0	0	0	0	1	5215	726	26	4		4	EPHA8	1	22924648	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	15761277	22924648	226325973	3	77346											
MECR	51102	broad.mit.edu	37	chr1	29520747	29520747	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggggcttggtgagaTgtggcacggggctgccctat	18	9	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29520747	C	C	29520747	1	2	69	0	1	0	0	0	0	0	0	0	9517	1479	51	5		5	MECR	1	29520747	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	6596099	29520747	219729874	4	77347											
HCRTR1	3061	broad.mit.edu	37	chr1	32086435	32086435	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaccgacgttgtgtccccGtggggcaggctgtgtccgtg	16	11	0	1	rs74679076		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32086435	A	A	32086435	1	1	69	0	1	0	0	0	0	0	0	0	7068	1160	40	4		4	HCRTR1	1	32086435	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2565688	32086435	217164186	5	77348											
HIVEP3	59269	broad.mit.edu	37	chr1	42104304	42104304	+	Intron	DEL	A	-	-													tgaacagggagggggctactAggggtagaggggcccatctg					rs5773747		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42104304	-	-	42104304	6	5	69	0	1	1	0	1	0	0	0	0	7255	435	15	0		0	HIVEP3	1	42104304	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	10017869	42104304	207146317	6	77349											
SLC5A9	200010	broad.mit.edu	37	chr1	48690581	48690581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccaaggcaaagacctcccCgttgtgtttcctgactctgg	10	13	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48690581	T	T	48690581	1	4	69	0	1	0	0	0	0	0	0	0	14786	667	23	4		4	SLC5A9	1	48690581	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	6586277	48690581	200560040	7	77350											
AGBL4	84871	broad.mit.edu	37	chr1	49020862	49020862	+	Intron	DEL	T	-	-													attgagggggtaagattgtcTtttttttttttcctgagata					rs137883446		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49020862	-	-	49020862	6	5	69	0	1	1	0	1	0	0	0	0	377	1624	56	0		0	AGBL4	1	49020862	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	330281	49020862	200229759	8	77351											
TXNDC12	51060	broad.mit.edu	37	chr1	52501485	52501485	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctgtgcataaactaaaCctacttgagactttacagac	6	9	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52501485	G	G	52501485	1	3	69	0	1	0	0	0	0	0	0	0	16919	522	18	4		4	TXNDC12	1	52501485	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3480623	52501485	196749136	9	77352											
ORC1L	4998	broad.mit.edu	37	chr1	52850896	52850896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttggaattcctgttccCgacagggaagagactcaggt	12	9	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52850896	T	T	52850896	3	4	69	1	0	0	0	0	1	0	0	0	11355	652	23	4	1097	4	ORC1L	1	52850896	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	349411	52850896	196399725	10	77353											
ZCCHC11	23318	broad.mit.edu	37	chr1	52926838	52926838	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcatagtatatcccaaatActgcactctaggatcaatag	5	9	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52926838	G	G	52926838	3	3	69	1	0	0	0	0	1	0	0	0	17706	391	14	5	1696	5	ZCCHC11	1	52926838	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	75942	52926838	196323783	11	77354											
JAK1	3716	broad.mit.edu	37	chr1	65337198	65337198	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctacttgaaatctccactTgtatgtttcacaggcatctc	5	12	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65337198	C	C	65337198	1	2	69	0	1	0	0	0	0	0	0	0	8007	1827	63	5		5	JAK1	1	65337198	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	12410360	65337198	183913423	12	77355											
DNAJC6	9829	broad.mit.edu	37	chr1	65830293	65830294	+	Intron	INS	-	TT	TT													gccatcaccatttttgtttgINStttgtttttttttttttttg							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	65830294	TT	TT	65830293	6	5	69	0	1	1	1	0	0	0	0	0	4693	1392	48	0		0	DNAJC6	1	65830293	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	493095	65830293	183420328	13	77356											
SLC44A5	204962	broad.mit.edu	37	chr1	76061886	76061887	+	Intron	DEL	TG	-	-													agttcaacatagtagacacaTgcacacacacacacacacac					rs71745575		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76061887	-	-	76061886	6	5	69	0	1	1	0	1	0	0	0	0	14753	1479	51	0		0	SLC44A5	1	76061886	Intron	DEL	TG	TCGA-17-Z040-01A-01W-0746-08	10231593	76061886	173188735	14	77357											
WDR63	126820	broad.mit.edu	37	chr1	85550564	85550565	+	Intron	INS	-	A	A													atgagttgaattttgtctccINSaaaaaatggtatgttgaact					rs138035028	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85550565	A	A	85550564	6	5	69	0	1	1	1	0	0	0	0	0	17441	609	21	0		0	WDR63	1	85550564	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	9488678	85550564	163700057	15	77358											
DDAH1	23576	broad.mit.edu	37	chr1	86004839	86004840	+	Intron	INS	-	C	C													tctttcttttcttttcttttINStttttttgaaacagagtttt					rs141586747		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86004840	C	C	86004839	6	5	69	0	1	1	1	0	0	0	0	0	4354	1856	64	0		0	DDAH1	1	86004839	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	454275	86004839	163245782	16	77359											
CLCA2	9635	broad.mit.edu	37	chr1	86898259	86898259	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttgcaggattccttctcttCccatgtttcaagtatttaaa	5	10	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86898259	G	G	86898259	1	3	69	0	1	0	0	0	0	0	0	0	3489	870	30	4		4	CLCA2	1	86898259	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	893420	86898259	162352362	17	77360											
HFM1	164045	broad.mit.edu	37	chr1	91813032	91813032	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcaatccagatgcaaaAcctgcatgtcatgaaaaagt	7	8	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91813032	C	C	91813032	2	2	69	1	0	0	0	0	0	0	0	1	7150	57	2	5		5	HFM1	1	91813032	Silent	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4914773	91813032	157437589	18	77361											
ALG14	199857	broad.mit.edu	37	chr1	95538226	95538226	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctgcatgcaacactccaaGaagtgctaagggtaccaggg	11	11	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95538226	A	A	95538226	1	1	69	0	1	0	0	0	0	0	0	0	516	957	33	4		4	ALG14	1	95538226	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3725194	95538226	153712395	19	77362											
RWDD3	25950	broad.mit.edu	37	chr1	95712434	95712434	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctggtaaaatgaaatggaaGacaggaatcttttagtaaaa	9	3	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95712434	A	A	95712434	1	1	69	0	1	0	0	0	0	0	0	0	13868	957	33	4		4	RWDD3	1	95712434	3'UTR	SNP	G	TCGA-17-Z040-01A-01W-0746-08	174208	95712434	153538187	20	77363											
LPPR4	9890	broad.mit.edu	37	chr1	99771802	99771802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatccagcctggcgctgtcCccggatgtaacaacagcatg	10	13	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771802	A	A	99771802	3	1	69	1	0	0	0	0	1	0	0	0	9014	623	22	2	1554	2	LPPR4	1	99771802	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	4059368	99771802	149478819	21	77364											
OLFM3	118427	broad.mit.edu	37	chr1	102312320	102312320	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaaaggcagaagcaaaatCttagcctttgcaatttacaa	7	7	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102312320	A	A	102312320	1	1	69	0	1	0	0	0	0	0	0	0	10949	928	32	3		3	OLFM3	1	102312320	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2540518	102312320	146938301	22	77365											
AMY2A	279	broad.mit.edu	37	chr1	104159888	104159888	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcatttagatgatttccatGagagactttttgatgttctt	8	5	2	5			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104159888	T	T	104159888	1	4	69	0	1	0	0	0	0	0	0	0	594	1305	45	3		3	AMY2A	1	104159888	5'Flank	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1847568	104159888	145090733	23	77366											
MAGI3	260425	broad.mit.edu	37	chr1	114006024	114006025	+	Intron	INS	-	A	A													gaaagatactgagagggtgcINSaaccagtgaggtagaaacct					rs142111604	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114006025	A	A	114006024	6	5	69	0	1	1	1	0	0	0	0	0	9284	725	25	0		0	MAGI3	1	114006024	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	9846136	114006024	135244597	24	77367											
MAN1A2	10905	broad.mit.edu	37	chr1	118003273	118003273	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattctttgtttgttataaaGagtcctttaagattggccca	7	6	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118003273	C	C	118003273	1	2	69	0	1	0	0	0	0	0	0	0	9303	957	33	4		4	MAN1A2	1	118003273	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3997249	118003273	131247348	25	77368											
NBPF9	400818	broad.mit.edu	37	chr1	144828309	144828309	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggccaattcactagctcaCtttctctctgtctctgtctc	5	15	6	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144828309	T	T	144828309	1	4	69	0	1	0	0	0	0	0	0	0	10294	580	20	4		4	NBPF9	1	144828309	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	26825036	144828309	104422312	26	77369											
PDE4DIP	9659	broad.mit.edu	37	chr1	145028445	145028445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttggcattgtccctaccCaagggaataaactgaaacgc	8	12	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145028445	A	A	145028445	1	1	69	0	1	0	0	0	0	0	0	0	11737	609	21	2		2	PDE4DIP	1	145028445	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	200136	145028445	104222176	27	77370											
NBPF9	400818	broad.mit.edu	37	chr1	145070205	145070205	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaaagaacctaacacaaTgaaaacaattttgaacaaga	4	7	1	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145070205	C	C	145070205	1	2	69	0	1	0	0	0	0	0	0	0	10294	1479	51	5		5	NBPF9	1	145070205	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	41760	145070205	104180416	28	77371											
NBPF9	400818	broad.mit.edu	37	chr1	145199961	145199961	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcaagaggttggatgccaCgatatagaagagcacaaaag	12	6	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145199961	T	T	145199961	1	4	69	0	1	0	0	0	0	0	0	0	10294	551	19	4		4	NBPF9	1	145199961	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	129756	145199961	104050660	29	77372											
NBPF10	100132406	broad.mit.edu	37	chr1	145248644	145248644	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgttggaagatagttttgGgatgggcttctgtgctagaa	14	3	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145248644	A	A	145248644	1	1	69	0	1	0	0	0	0	0	0	0	10287	1247	43	4		4	NBPF10	1	145248644	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	48683	145248644	104001977	30	77373											
NBPF10	100132406	broad.mit.edu	37	chr1	145269495	145269495	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtctgttgtacctcatatGtaagtattatcccatttaga	6	7	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145269495	A	A	145269495	1	1	69	0	1	0	0	0	0	0	0	0	10287	1392	48	4		4	NBPF10	1	145269495	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	20851	145269495	103981126	31	77374											
NBPF10	100132406	broad.mit.edu	37	chr1	145286466	145286466	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagcatagtgcctgtcatAaaatggtgccacaatgaaaa	8	10	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145286466	C	C	145286466	1	2	69	0	1	0	0	0	0	0	0	0	10287	377	13	5		5	NBPF10	1	145286466	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	16971	145286466	103964155	32	77375											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	69	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-17-Z040-01A-01W-0746-08	6456094	151742560	97508061	33	77376											
FCRL1	115350	broad.mit.edu	37	chr1	157789087	157789088	+	Intron	INS	-	A	A													gtcatcagggttgtgcatttINSaaaaaaaaatcccattcagc					rs145006489	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157789088	A	A	157789087	6	5	69	0	1	1	1	0	0	0	0	0	5851	1769	61	0		0	FCRL1	1	157789087	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	6046527	157789087	91461534	34	77377											
KCNJ10	3766	broad.mit.edu	37	chr1	160013060	160013061	+	Intron	DEL	AA	-	-													cttccaggccaatcccccttAaaacacacacacacacacac					rs5778148		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160013061	-	-	160013060	6	5	69	0	1	1	0	1	0	0	0	0	8114	377	13	0		0	KCNJ10	1	160013060	Intron	DEL	AA	TCGA-17-Z040-01A-01W-0746-08	2223973	160013060	89237561	35	77378											
NDUFS2	4720	broad.mit.edu	37	chr1	161183976	161183976	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgtatttggagaagtagAtcggtgagcaggggagcagc	16	4	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161183976	G	G	161183976	3	3	69	1	0	0	0	0	1	0	0	0	10387	333	12	5	1459	5	NDUFS2	1	161183976	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	1170916	161183976	88066645	36	77379											
RXRG	6258	broad.mit.edu	37	chr1	165372175	165372176	+	Intron	DEL	CT	-	-													cacatacatgcacatgcacaCtcttacacacacgtgcatgc					rs67617018		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165372176	-	-	165372175	6	5	69	0	1	1	0	1	0	0	0	0	13876	580	20	0		0	RXRG	1	165372175	Intron	DEL	CT	TCGA-17-Z040-01A-01W-0746-08	4188199	165372175	83878446	37	77380											
CFH	3075	broad.mit.edu	37	chr1	196670605	196670605	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgttatgtgtgtattattCcagccagaatgggaaatgct	10	5	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196670605	T	T	196670605	1	4	69	0	1	0	0	0	0	0	0	0	3313	870	30	4		4	CFH	1	196670605	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	31298430	196670605	52580016	38	77381											
NR5A2	2494	broad.mit.edu	37	chr1	200017162	200017162	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacatggttttttgggaaatCtttgtgggctattgtaacga	12	4	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200017162	G	G	200017162	1	3	69	0	1	0	0	0	0	0	0	0	10731	928	32	4		4	NR5A2	1	200017162	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3346557	200017162	49233459	39	77382											
NR5A2	2494	broad.mit.edu	37	chr1	200022695	200022696	+	Intron	INS	-	CG	CG													catcccccccagcatgcacaINScgcacacacacacacacaca							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CG	200022696	CG	CG	200022695	6	5	69	0	1	1	1	0	0	0	0	0	10731	174	6	0		0	NR5A2	1	200022695	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	5533	200022695	49227926	40	77383											
LGR6	59352	broad.mit.edu	37	chr1	202245609	202245609	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccgcatcagccacatcCccgactacgcgttccagaat	6	17	2	1	rs117583891	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202245609	T	T	202245609	3	4	69	1	0	0	0	0	1	0	0	0	8830	623	22	4	769	4	LGR6	1	202245609	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2222914	202245609	47005012	41	77384											
ADIPOR1	51094	broad.mit.edu	37	chr1	202917925	202917925	+	Intron	DEL	T	-	-													cattacattttctttctttcTttttttttttttgaaatgga					rs112598947		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	202917925	-	-	202917925	6	5	69	0	1	1	0	1	0	0	0	0	318	1624	56	0		0	ADIPOR1	1	202917925	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	672316	202917925	46332696	42	77385											
C4BPB	725	broad.mit.edu	37	chr1	207262997	207262997	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccttttgcggtgttttgagGaactctgtctagggctttaa	11	7	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207262997	C	C	207262997	1	2	69	0	1	0	0	0	0	0	0	0	2273	1189	41	4		4	C4BPB	1	207262997	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	4345072	207262997	41987624	43	77386											
HHAT	55733	broad.mit.edu	37	chr1	210570901	210570901	+	Intron	DEL	T	-	-													tggaacaaaatgcaacacaaTtttttttttttttgaaaagt					rs72083204		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	210570901	-	-	210570901	6	5	69	0	1	1	0	1	0	0	0	0	7156	1508	52	0		0	HHAT	1	210570901	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	3307904	210570901	38679720	44	77387											
PTPN14	5784	broad.mit.edu	37	chr1	214638116	214638116	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaggacgttgtagcgccGtgtccggcggagcttcagac	15	12	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214638116	T	T	214638116	2	4	69	1	0	0	0	0	0	0	0	1	12889	1144	40	3		3	PTPN14	1	214638116	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	4067215	214638116	34612505	45	77388											
HLX	3142	broad.mit.edu	37	chr1	221054495	221054495	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagcggagagtgtgagtgTgcccgagatgtaacctgcta	14	8	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	221054495	C	C	221054495	1	2	69	0	1	0	0	0	0	0	0	0	7283	1711	59	5		5	HLX	1	221054495	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	6416379	221054495	28196126	46	77389											
TTC13	79573	broad.mit.edu	37	chr1	231048321	231048321	+	Intron	SNP	A	C	C													cagaggttcaaaaaatttacAaaagaatcataggaagagca							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231048321	C	C	231048321	1	2	69	0	1	0	0	0	0	0	0	0	16806	145	5	5		5	TTC13	1	231048321	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	9993826	231048321	18202300	47	77390	353	2									
TTC13	79573	broad.mit.edu	37	chr1	231048323	231048323	+	Intron	SNP	A	T	T													gaggttcaaaaaatttacaaAagaatcataggaagagcaga							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231048323	T	T	231048323	1	4	69	0	1	0	0	0	0	0	0	0	16806	29	1	5		5	TTC13	1	231048323	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	2	231048323	18202298	48	77391	353	2									
EGLN1	54583	broad.mit.edu	37	chr1	231503297	231503297	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtaccaatatatcctgGccccaaatgacgtttacctg	6	12	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231503297	A	A	231503297	1	1	69	0	1	0	0	0	0	0	0	0	5008	1218	42	4		4	EGLN1	1	231503297	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	454974	231503297	17747324	49	77392											
RYR2	6262	broad.mit.edu	37	chr1	237954780	237954780	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgttagccttatttgtcGcatttgctatcaatttcatc	6	8	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237954780	A	A	237954780	3	1	69	1	0	0	0	0	1	0	0	0	13880	1087	38	4	13898	4	RYR2	1	237954780	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	6451483	237954780	11295841	50	77393											
ZP4	57829	broad.mit.edu	37	chr1	238051732	238051732	+	Frame_Shift_Del	DEL	G	-	-													gcccttcacagtctcctcgaGagatgggtgaaggtgcacat							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	238051732	-	-	238051732	7	5	69	1	0	1	0	1	0	0	0	0	18347	942	33	0	1179	0	ZP4	1	238051732	Frame_Shift_Del	DEL	G	TCGA-17-Z040-01A-01W-0746-08	96952	238051732	11198889	51	77394											
OR2L2	26246	broad.mit.edu	37	chr1	248202307	248202307	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagcacccacctcactgtAgtgtccttctactatgcacc	6	15	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248202307	G	G	248202307	2	3	69	1	0	0	0	0	0	0	0	1	11101	407	15	5		5	OR2L2	1	248202307	Silent	SNP	A	TCGA-17-Z040-01A-01W-0746-08	10150575	248202307	1048314	52	77395											
SNTG2	54221	broad.mit.edu	37	chr2	1285286	1285286	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtttatgtggtgtgtTgtgtggtgtgtgtgtttggt	18	0	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1285286	G	G	1285286	1	3	69	0	1	0	0	0	0	0	0	0	14989	1827	63	5		5	SNTG2	2	1285286	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08		1285286	241914087	53	77396											
MYT1L	23040	broad.mit.edu	37	chr2	2201651	2201652	+	Intron	INS	-	CA	CA													tacacacatatatacacatgINScacacacacacaacgaatgt					rs141470375	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	2201652	CA	CA	2201651	6	5	69	0	1	1	1	0	0	0	0	0	10201	1334	46	0		0	MYT1L	2	2201651	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	916365	2201651	240997722	54	77397											
CMPK2	129607	broad.mit.edu	37	chr2	7001250	7001259	+	Intron	DEL	CACACACACC	-	-													cacacgcacacacacacacaCacacacacccacacacttat					rs57039812		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7001259	-	-	7001250	6	5	69	0	1	1	0	1	0	0	0	0	3613	493	17	0		0	CMPK2	2	7001250	Intron	DEL	CACACACACC	TCGA-17-Z040-01A-01W-0746-08	4799599	7001250	236198123	55	77398											
RNF144A	9781	broad.mit.edu	37	chr2	7137027	7137027	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggtggggaggtctgaccttCcgtgcttctctcgtttcaga	14	10	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7137027	T	T	7137027	1	4	69	0	1	0	0	0	0	0	0	0	13556	870	30	4		4	RNF144A	2	7137027	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	135777	7137027	236062346	56	77399											
NBAS	51594	broad.mit.edu	37	chr2	15519843	15519843	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtagtggggtttccctTtatgggctataccagctgga	12	10	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15519843	A	A	15519843	3	1	69	1	0	0	0	0	1	0	0	0	10280	1841	64	5	3734	5	NBAS	2	15519843	Missense_Mutation	SNP	T	TCGA-17-Z040-01A-01W-0746-08	8382816	15519843	227679530	57	77400											
ADCY3	109	broad.mit.edu	37	chr2	25131485	25131485	+	Intron	DEL	A	-	-													agtttaaagcgcctctatatAattacccacccctcccccaa					rs67363228		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25131485	-	-	25131485	6	5	69	0	1	1	0	1	0	0	0	0	295	377	13	0		0	ADCY3	2	25131485	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	9611642	25131485	218067888	58	77401											
EPT1	85465	broad.mit.edu	37	chr2	26596288	26596288	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attctagcactcccttagggGagctttttgatcatggcctg	10	10	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26596288	T	T	26596288	4	4	69	1	0	0	0	0	0	1	0	0	5241	1175	41	3	382	3	EPT1	2	26596288	Nonsense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1464803	26596288	216603085	59	77402											
EMILIN1	11117	broad.mit.edu	37	chr2	27303000	27303000	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctttggtccttggacccaGagggggttgtacctacagga	13	9	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27303000	C	C	27303000	1	2	69	0	1	0	0	0	0	0	0	0	5135	957	33	4		4	EMILIN1	2	27303000	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	706712	27303000	215896373	60	77403											
IFT172	26160	broad.mit.edu	37	chr2	27668871	27668871	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgcctgcagcaaagaagaGttgcaaatgggagtgaacaa	12	7	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27668871	C	C	27668871	1	2	69	0	1	0	0	0	0	0	0	0	7627	1044	36	4		4	IFT172	2	27668871	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	365871	27668871	215530502	61	77404											
IFT172	26160	broad.mit.edu	37	chr2	27669295	27669295	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaccaatgatcctgtaagGcagccacagaactaaaaaac	7	11	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27669295	C	C	27669295	1	2	69	0	1	0	0	0	0	0	0	0	7627	1218	42	4		4	IFT172	2	27669295	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	424	27669295	215530078	62	77405											
LCLAT1	253558	broad.mit.edu	37	chr2	30723963	30723964	+	Intron	DEL	TA	-	-													tgtgtgtgtgtgtgtgtgtgTatgtgtgtgtgtgtgtgtgt					rs67154045		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30723964	-	-	30723963	6	5	69	0	1	1	0	1	0	0	0	0	8749	1653	57	0		0	LCLAT1	2	30723963	Intron	DEL	TA	TCGA-17-Z040-01A-01W-0746-08	3054668	30723963	212475410	63	77406											
LTBP1	4052	broad.mit.edu	37	chr2	33328694	33328695	+	Intron	DEL	GA	-	-													gtgtgtgtgtgtgtgtgtgtGagtgttatgctgccatgtgg					rs71871697		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33328695	-	-	33328694	6	5	69	0	1	1	0	1	0	0	0	0	9160	1305	45	0		0	LTBP1	2	33328694	Intron	DEL	GA	TCGA-17-Z040-01A-01W-0746-08	2604731	33328694	209870679	64	77407											
HEATR5B	54497	broad.mit.edu	37	chr2	37234479	37234480	+	Intron	DEL	AC	-	-													tcaaatcaattaaaaacattActtttttttttttttttttt					rs5830448		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37234480	-	-	37234479	6	5	69	0	1	1	0	1	0	0	0	0	7099	406	14	0		0	HEATR5B	2	37234479	Intron	DEL	AC	TCGA-17-Z040-01A-01W-0746-08	3905785	37234479	205964894	65	77408											
C2orf56	55471	broad.mit.edu	37	chr2	37475310	37475310	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatcaaatgagccatcagtGaggcagcagttacttcaagg	10	8	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37475310	C	C	37475310	2	2	69	1	0	0	0	0	0	0	0	1	2199	1277	45	4		4	C2orf56	2	37475310	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	240831	37475310	205724063	66	77409											
VRK2	7444	broad.mit.edu	37	chr2	58290995	58290995	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgccattaacagcattcAtgattcagggaaggagataa	10	6	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58290995	T	T	58290995	1	4	69	0	1	0	0	0	0	0	0	0	17347	232	8	5		5	VRK2	2	58290995	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	20815685	58290995	184908378	67	77410											
TET3	200424	broad.mit.edu	37	chr2	74320583	74320583	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catccctccttccaagacctGgcctccccaggtgcagaatc	7	18	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74320583	C	C	74320583	1	2	69	0	1	0	0	0	0	0	0	0	15893	1363	47	4		4	TET3	2	74320583	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	16029588	74320583	168878790	68	77411											
TACR1	6869	broad.mit.edu	37	chr2	75347863	75347863	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctgtggctgacagccGgggctggaggggatgtatga	21	6	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75347863	A	A	75347863	3	1	69	1	0	0	0	0	1	0	0	0	15624	1115	39	4	822	4	TACR1	2	75347863	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1027280	75347863	167851510	69	77412											
LRRTM4	80059	broad.mit.edu	37	chr2	77035949	77035950	+	Intron	INS	-	T	T													ctgagcattttctgctgaacINStttttttttcagttcaactc					rs145328965	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77035950	T	T	77035949	6	5	69	0	1	1	1	0	0	0	0	0	9129	580	20	0		0	LRRTM4	2	77035949	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1688086	77035949	166163424	70	77413											
REG3G	130120	broad.mit.edu	37	chr2	79253388	79253388	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcacgtgaggtaatgaCgtggtgtctaatgaaactgc	13	6	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79253388	T	T	79253388	1	4	69	0	1	0	0	0	0	0	0	0	13321	551	19	4		4	REG3G	2	79253388	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2217439	79253388	163945985	71	77414											
CTNNA2	1496	broad.mit.edu	37	chr2	80686890	80686890	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taccatcaaaatctgtcttgGagatgatgtgccgacatccc	8	11	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80686890	T	T	80686890	1	4	69	0	1	0	0	0	0	0	0	0	4047	1189	41	3		3	CTNNA2	2	80686890	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1433502	80686890	162512483	72	77415											
MRPL35	51318	broad.mit.edu	37	chr2	86437881	86437881	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagtacaaaacttgatgtaAattgtaccaatgaatacgta	6	5	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86437881	T	T	86437881	1	4	69	0	1	0	0	0	0	0	0	0	9892	29	1	5		5	MRPL35	2	86437881	3'UTR	SNP	A	TCGA-17-Z040-01A-01W-0746-08	5750991	86437881	156761492	73	77416											
KDM3A	55818	broad.mit.edu	37	chr2	86716548	86716548	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattcccaaaggacagtgtGagcaagaagaaggtagggtg	15	5	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86716548	T	T	86716548	4	4	69	1	0	0	0	0	0	1	0	0	8196	1291	45	3	3503	3	KDM3A	2	86716548	Nonsense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	278667	86716548	156482825	74	77417											
GPAT2	150763	broad.mit.edu	37	chr2	96697674	96697674	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacagaagcagaggcatgGggcagggaagagccaagctt	16	7	0	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96697674	A	A	96697674	1	1	69	0	1	0	0	0	0	0	0	0	6654	1247	43	4		4	GPAT2	2	96697674	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	9981126	96697674	146501699	75	77418											
SNRNP200	23020	broad.mit.edu	37	chr2	96964847	96964847	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaaaactctggaataTtgagttcagaagcacaccag	10	7	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96964847	C	C	96964847	1	2	69	0	1	0	0	0	0	0	0	0	14966	1508	52	5		5	SNRNP200	2	96964847	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	267173	96964847	146234526	76	77419											
FAM178B	51252	broad.mit.edu	37	chr2	97630085	97630085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttatcactcaacaggcCtttaaagagtgaatgcagaa	9	7	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97630085	T	T	97630085	1	4	69	0	1	0	0	0	0	0	0	0	5549	696	24	4		4	FAM178B	2	97630085	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	665238	97630085	145569288	77	77420											
MAP4K4	9448	broad.mit.edu	37	chr2	102447735	102447735	+	Intron	DEL	T	-	-													ttatttgattcagtactgtgTtttttttcaagaaaactttc					rs112415164		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102447735	-	-	102447735	6	5	69	0	1	1	0	1	0	0	0	0	9354	1740	60	0		0	MAP4K4	2	102447735	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	4817650	102447735	140751638	78	77421											
IL1RL1	9173	broad.mit.edu	37	chr2	102956715	102956715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctacaactggacagcaCctcttgagtggtttaaggta	9	10	2	1	rs141010284	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102956715	A	A	102956715	3	1	69	1	0	0	0	0	1	0	0	0	7733	507	18	3	440	3	IL1RL1	2	102956715	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	508980	102956715	140242658	79	77422											
CNTNAP5	129684	broad.mit.edu	37	chr2	124799031	124799031	+	Intron	DEL	G	-	-													tagaagaagccaaagacattGggtggtttcttcatgcatta					rs35052286		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124799031	-	-	124799031	6	5	69	0	1	1	0	1	0	0	0	0	3682	1363	47	0		0	CNTNAP5	2	124799031	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	21842316	124799031	118400342	80	77423											
ARHGEF4	50649	broad.mit.edu	37	chr2	131721957	131721957	+	Intron	DEL	C	-	-													tttccatctcctggtcccttCcttcccattgcttcgccctg							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131721957	-	-	131721957	6	5	69	0	1	1	0	1	0	0	0	0	910	870	30	0		0	ARHGEF4	2	131721957	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	6922926	131721957	111477416	81	77424											
LOC150786	150786	broad.mit.edu	37	chr2	132120587	132120588	+	Frame_Shift_Ins	INS	-	G	G													cgttattaatgaagggaaaaINSggttcaagccaatattcaca							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132120588	G	G	132120587	7	5	69	1	0	1	1	0	0	0	0	0	8948	72	3	0	61	0	LOC150786	2	132120587	Frame_Shift_Ins	INS	-	TCGA-17-Z040-01A-01W-0746-08	398630	132120587	111078786	82	77425											
LRP1B	53353	broad.mit.edu	37	chr2	141709575	141709575	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgcatgacataattcgtatCatctgataatgtgatcagaa	8	6	3	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141709575	T	T	141709575	1	4	69	0	1	0	0	0	0	0	0	0	9042	841	29	4		4	LRP1B	2	141709575	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	9588988	141709575	101489798	83	77426											
LRP1B	53353	broad.mit.edu	37	chr2	141806744	141806744	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtccattcctctaacaaTtcctgggcgtcctttcccat	5	15	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141806744	C	C	141806744	3	2	69	1	0	0	0	0	1	0	0	0	9042	1493	52	5	12523	5	LRP1B	2	141806744	Missense_Mutation	SNP	T	TCGA-17-Z040-01A-01W-0746-08	97169	141806744	101392629	84	77427											
ARHGAP15	55843	broad.mit.edu	37	chr2	144425850	144425850	+	Intron	DEL	T	-	-													actgccttgattctattttcTttttttttttttcttttttg					rs112282637		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144425850	-	-	144425850	6	5	69	0	1	1	0	1	0	0	0	0	868	1624	56	0		0	ARHGAP15	2	144425850	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	2619106	144425850	98773523	85	77428											
FMNL2	114793	broad.mit.edu	37	chr2	153415244	153415245	+	Intron	INS	-	C	C													aatgatttttttttttttttINSccccaacagatgggtcagag					rs142812536	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153415245	C	C	153415244	6	5	69	0	1	1	1	0	0	0	0	0	6010	1798	62	0		0	FMNL2	2	153415244	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	8989394	153415244	89784129	86	77429											
UPP2	151531	broad.mit.edu	37	chr2	158979866	158979867	+	Intron	INS	-	T	T													cttagcatcatcgaaacctcINStttttttttctcccagcacc					rs150371062	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158979867	T	T	158979866	6	5	69	0	1	1	1	0	0	0	0	0	17139	928	32	0		0	UPP2	2	158979866	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	5564622	158979866	84219507	87	77430											
PKP4	8502	broad.mit.edu	37	chr2	159432314	159432314	+	Intron	DEL	C	-	-													gaagtctataacaaaaaaaaCaaaatgatgctgtttaagag					rs3755410	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159432314	-	-	159432314	6	5	69	0	1	1	0	1	0	0	0	0	12082	493	17	0		0	PKP4	2	159432314	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	452448	159432314	83767059	88	77431											
SCN9A	6335	broad.mit.edu	37	chr2	167163587	167163587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaatactatgaaagtctGcaggaggaaaaagaaaggat	11	4	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167163587	T	T	167163587	1	4	69	0	1	0	0	0	0	0	0	0	14038	1334	46	3		3	SCN9A	2	167163587	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	7731273	167163587	76035786	89	77432											
XIRP2	129446	broad.mit.edu	37	chr2	168110726	168110726	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attccaggagctgcactctaTgtatagcctcatatctctag	7	11	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168110726	G	G	168110726	1	3	69	0	1	0	0	0	0	0	0	0	17557	1479	51	5		5	XIRP2	2	168110726	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	947139	168110726	75088647	90	77433											
ZNF385B	151126	broad.mit.edu	37	chr2	180554545	180554554	+	Intron	DEL	TGTGTGTGTT	-	-													tgtgtgtgtgtgtgtgtgtgTgtgtgtgtttatttgttttt					rs67964547		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180554554	-	-	180554545	6	5	69	0	1	1	0	1	0	0	0	0	18003	1711	59	0		0	ZNF385B	2	180554545	Intron	DEL	TGTGTGTGTT	TCGA-17-Z040-01A-01W-0746-08	12443819	180554545	62644828	91	77434											
ITGA4	3676	broad.mit.edu	37	chr2	182339856	182339856	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcctgggtgcagctttcaCatcatttggtctacttttat	7	9	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182339856	A	A	182339856	1	1	69	0	1	0	0	0	0	0	0	0	7948	493	17	3		3	ITGA4	2	182339856	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1785311	182339856	60859517	92	77435											
PLCL1	5334	broad.mit.edu	37	chr2	198968508	198968508	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attataagatgcccatttttCtgagatatatactcagattt	5	6	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198968508	A	A	198968508	1	1	69	0	1	0	0	0	0	0	0	0	12134	928	32	3		3	PLCL1	2	198968508	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	16628652	198968508	44230865	93	77436											
STRADB	55437	broad.mit.edu	37	chr2	202342454	202342454	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaggcatagggctgtgtatGatttcccacagttcagcaca	11	9	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202342454	C	C	202342454	3	2	69	1	0	0	0	0	1	0	0	0	15443	1290	45	4	687	4	STRADB	2	202342454	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3373946	202342454	40856919	94	77437											
STRADB	55437	broad.mit.edu	37	chr2	202342907	202342907	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctttccaggacatgcataGaactcaggtaagtgctgcta	10	10	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202342907	C	C	202342907	3	2	69	1	0	0	0	0	1	0	0	0	15443	942	33	4	848	4	STRADB	2	202342907	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	453	202342907	40856466	95	77438											
KLF7	8609	broad.mit.edu	37	chr2	207945807	207945808	+	3'UTR	INS	-	TG	TG													tgtgtgtgtgtgtgtgtgtgINStacagaggtttataagtgag					rs59847589		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	207945808	TG	TG	207945807	6	5	69	0	1	1	1	0	0	0	0	0	8422	1392	48	0		0	KLF7	2	207945807	3'UTR	INS	-	TCGA-17-Z040-01A-01W-0746-08	5602900	207945807	35253566	96	77439											
ABCA12	26154	broad.mit.edu	37	chr2	215843833	215843833	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgctccaggccctaatcaGagggtgaggtgatgagctct	14	9	2	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215843833	C	C	215843833	1	2	69	0	1	0	0	0	0	0	0	0	30	957	33	4		4	ABCA12	2	215843833	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	7898026	215843833	27355540	97	77440											
ACSL3	2181	broad.mit.edu	37	chr2	223743471	223743473	+	Intron	DEL	TTC	-	-													tgcgctcatatttgtgtctgTtcttcttgtattcctcgtta							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	223743473	-	-	223743471	6	5	69	0	1	1	0	1	0	0	0	0	178	1740	60	0		0	ACSL3	2	223743471	Intron	DEL	TTC	TCGA-17-Z040-01A-01W-0746-08	7899638	223743471	19455902	98	77441											
PID1	55022	broad.mit.edu	37	chr2	229933858	229933861	+	Intron	DEL	TTTG	-	-													tttctttaacgagaagggttTttgtgtgtgtgtgtgtgtgt					rs3083812		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	229933861	-	-	229933858	6	5	69	0	1	1	0	1	0	0	0	0	11977	1856	64	0		0	PID1	2	229933858	Intron	DEL	TTTG	TCGA-17-Z040-01A-01W-0746-08	6190387	229933858	13265515	99	77442											
UGT1A4	54657	broad.mit.edu	37	chr2	234628292	234628292	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgcccaacatggtcttcAttgggggcatcaactgtgcc	10	12	4	0	rs147342917	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234628292	C	C	234628292	3	2	69	1	0	0	0	0	1	0	0	0	17073	217	8	5	828	5	UGT1A4	2	234628292	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4694434	234628292	8571081	100	77443											
PRR21	643905	broad.mit.edu	37	chr2	240982045	240982045	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagggccgtgggtgaagagGcatggacgaagggccgtggg	22	6	0	2	rs142996407	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240982045	C	C	240982045	3	2	69	1	0	0	0	0	1	0	0	0	12698	1203	42	4	817	4	PRR21	2	240982045	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	6353753	240982045	2217328	101	77444											
CNTN4	152330	broad.mit.edu	37	chr3	2334812	2334813	+	Intron	INS	-	TT	TT													gcactgtggtttaacaagagINSttcttgaggactgttgattg					rs143931961	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2334813	TT	TT	2334812	6	5	69	0	1	1	1	0	0	0	0	0	3675	1044	36	0		0	CNTN4	3	2334812	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08		2334812	195687618	102	77445											
CRBN	51185	broad.mit.edu	37	chr3	3194092	3194092	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctggatttttctgcccaAttaaggtaaaaaaagaaaaa	6	6	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3194092	G	G	3194092	1	3	69	0	1	0	0	0	0	0	0	0	3883	116	4	5		5	CRBN	3	3194092	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	859280	3194092	194828338	103	77446											
SRGAP3	9901	broad.mit.edu	37	chr3	9132090	9132091	+	Intron	INS	-	A	A													taacccttatttctttgcacINSaaaaaaaaaaaatcaagtga					rs112456502		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9132091	A	A	9132090	6	5	69	0	1	1	1	0	0	0	0	0	15265	493	17	0		0	SRGAP3	3	9132090	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	5937998	9132090	188890340	104	77447											
CIDEC	63924	broad.mit.edu	37	chr3	10059657	10059657	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcccttggggggatgccCgtcctctgtggcatcgagga	15	12	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10059657	T	T	10059657	1	4	69	0	1	0	0	0	0	0	0	0	3458	667	23	4		4	CIDEC	3	10059657	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	927567	10059657	187962773	105	77448											
ATP2B2	491	broad.mit.edu	37	chr3	10683670	10683677	+	Intron	DEL	CATCCACC	-	-													cactcatccacccacacactCatccacccatccacccatcc					rs111581747		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10683677	-	-	10683670	6	5	69	0	1	1	0	1	0	0	0	0	1144	841	29	0		0	ATP2B2	3	10683670	Intron	DEL	CATCCACC	TCGA-17-Z040-01A-01W-0746-08	624013	10683670	187338760	106	77449											
OXNAD1	92106	broad.mit.edu	37	chr3	16343199	16343199	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctttgaccctcagcctgcgGatgcctctagaaacctcgtg	9	14	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16343199	C	C	16343199	3	2	69	1	0	0	0	0	1	0	0	0	11427	1174	41	4	517	4	OXNAD1	3	16343199	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	5659529	16343199	181679231	107	77450											
RARB	5915	broad.mit.edu	37	chr3	25326956	25326956	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagacatttaagggggctGttggtagtgacatgatcact	14	5	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25326956	C	C	25326956	1	2	69	0	1	0	0	0	0	0	0	0	13161	1392	48	4		4	RARB	3	25326956	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	8983757	25326956	172695474	108	77451											
PDCD6IP	10015	broad.mit.edu	37	chr3	33887132	33887132	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcttaagaaaaccacattCaagccattttatataatgaa	4	8	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33887132	A	A	33887132	1	1	69	0	1	0	0	0	0	0	0	0	11718	841	29	3		3	PDCD6IP	3	33887132	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	8560176	33887132	164135298	109	77452											
SCN11A	11280	broad.mit.edu	37	chr3	38991881	38991881	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggacagagacaagccaCagatcctcagaaaggcctca	9	13	3	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38991881	G	G	38991881	1	3	69	0	1	0	0	0	0	0	0	0	14026	493	17	4		4	SCN11A	3	38991881	5'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5104749	38991881	159030549	110	77453											
USP19	10869	broad.mit.edu	37	chr3	49154844	49154844	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgactacactggtatccctaCccaaccctgtactactagaa	5	15	0	1	rs138056152	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49154844	T	T	49154844	1	4	69	0	1	0	0	0	0	0	0	0	17176	522	18	4		4	USP19	3	49154844	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	10162963	49154844	148867586	111	77454											
ERC2	26059	broad.mit.edu	37	chr3	56145260	56145262	+	Intron	DEL	ACA	-	-													aagaccaattcgtagtttagAcaaaaacaagacaagcaatc					rs146650889		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56145262	-	-	56145260	6	5	69	0	1	1	0	1	0	0	0	0	5253	290	10	0		0	ERC2	3	56145260	Intron	DEL	ACA	TCGA-17-Z040-01A-01W-0746-08	6990416	56145260	141877170	112	77455											
IL17RD	54756	broad.mit.edu	37	chr3	57131837	57131837	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcaagggcaggccgggcctCcccgtcttggtccaggcccc	14	17	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57131837	G	G	57131837	3	3	69	1	0	0	0	0	1	0	0	0	7712	864	30	4	333	4	IL17RD	3	57131837	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	986577	57131837	140890593	113	77456											
FAM107A	11170	broad.mit.edu	37	chr3	58568199	58568199	+	Intron	DEL	T	-	-													agctccaggtaggatgcaggTtaacgcccctcaagtggact					rs10716599		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58568199	-	-	58568199	6	5	69	0	1	1	0	1	0	0	0	0	5435	1740	60	0		0	FAM107A	3	58568199	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	1436362	58568199	139454231	114	77457											
FHIT	2272	broad.mit.edu	37	chr3	60866411	60866413	+	Intron	DEL	AAC	-	-													tgaaactcatctcaaaaacaAacaacaacaacaacaacaac					rs148135383		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60866413	-	-	60866411	6	5	69	0	1	1	0	1	0	0	0	0	5934	29	1	0		0	FHIT	3	60866411	Intron	DEL	AAC	TCGA-17-Z040-01A-01W-0746-08	2298212	60866411	137156019	115	77458											
PTPRG	5793	broad.mit.edu	37	chr3	62005351	62005351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacacaaatggtaagtaCgggaggtgatggatgtgtta	13	5	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62005351	A	A	62005351	1	1	69	0	1	0	0	0	0	0	0	0	12910	551	19	3		3	PTPRG	3	62005351	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1138940	62005351	136017079	116	77459											
SYNPR	132204	broad.mit.edu	37	chr3	63340237	63340237	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcacatgagaagtatccttgGatcccttagtaggaagaact	10	8	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63340237	C	C	63340237	1	2	69	0	1	0	0	0	0	0	0	0	15578	1189	41	4		4	SYNPR	3	63340237	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1334886	63340237	134682193	117	77460											
FILIP1L	11259	broad.mit.edu	37	chr3	99709075	99709077	+	Intron	DEL	GAG	-	-													ggtagagagggtagtcaagaGaggagagagaggcaaagata							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99709077	-	-	99709075	6	5	69	0	1	1	0	1	0	0	0	0	5952	957	33	0		0	FILIP1L	3	99709075	Intron	DEL	GAG	TCGA-17-Z040-01A-01W-0746-08	36368838	99709075	98313355	118	77461											
ALCAM	214	broad.mit.edu	37	chr3	105191446	105191446	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatatacctgttttatgggtCtagaaactgaggagcaaata	9	5	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105191446	G	G	105191446	1	3	69	0	1	0	0	0	0	0	0	0	487	928	32	4		4	ALCAM	3	105191446	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5482371	105191446	92830984	119	77462											
MYH15	22989	broad.mit.edu	37	chr3	108205512	108205512	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaaatccatattttagacCcaaacttctacaatcaatgt	2	9	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108205512	G	G	108205512	1	3	69	0	1	0	0	0	0	0	0	0	10128	638	22	4		4	MYH15	3	108205512	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3014066	108205512	89816918	120	77463											
BOC	91653	broad.mit.edu	37	chr3	113005743	113005744	+	3'UTR	INS	-	T	T													cccagaaagactatatattgINSttttttttttaaaaaaaaaa					rs146459508	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113005744	T	T	113005743	6	5	69	0	1	1	1	0	0	0	0	0	1487	1392	48	0		0	BOC	3	113005743	3'UTR	INS	-	TCGA-17-Z040-01A-01W-0746-08	4800231	113005743	85016687	121	77464											
B4GALT4	8702	broad.mit.edu	37	chr3	118942545	118942545	+	Intron	DEL	C	-	-													ctaaggacaccagcctgttgCctcctagagggggagtcagg					rs78977010		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118942545	-	-	118942545	6	5	69	0	1	1	0	1	0	0	0	0	1278	754	26	0		0	B4GALT4	3	118942545	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	5936802	118942545	79079885	122	77465											
MYLK	4638	broad.mit.edu	37	chr3	123401893	123401897	+	Intron	DEL	GGCTG	-	-													caagcagggcgacatcacttGgctgggctgggctgggctgg					rs112444786		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123401897	-	-	123401893	6	5	69	0	1	1	0	1	0	0	0	0	10150	1363	47	0		0	MYLK	3	123401893	Intron	DEL	GGCTG	TCGA-17-Z040-01A-01W-0746-08	4459348	123401893	74620537	123	77466											
DNAJC13	23317	broad.mit.edu	37	chr3	132175372	132175372	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttgcagatgctgtattcaGgttcaatgctaatatttcat	7	7	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132175372	C	C	132175372	3	2	69	1	0	0	0	0	1	0	0	0	4672	1000	35	4	1165	4	DNAJC13	3	132175372	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	8773479	132175372	65847058	124	77467											
TF	7018	broad.mit.edu	37	chr3	133428411	133428411	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgatgtcacctggaactCtctttgaggcaagaagtcct	10	10	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133428411	A	A	133428411	1	1	69	0	1	0	0	0	0	0	0	0	15908	928	32	3		3	TF	3	133428411	5'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1253039	133428411	64594019	125	77468											
IL12A	3592	broad.mit.edu	37	chr3	159711626	159711626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcagttattgatgagctgAtgcaggtaagacttcattct	11	6	2	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159711626	T	T	159711626	3	4	69	1	0	0	0	0	1	0	0	0	7694	333	12	5	623	5	IL12A	3	159711626	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	26283215	159711626	38310804	126	77469											
PPM1L	151742	broad.mit.edu	37	chr3	160635668	160635669	+	Intron	INS	-	TTG	TTG													cattgtgattaatattccttINSttctttgttcgtaataaaat					rs145483333		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTG	160635669	TTG	TTG	160635668	6	5	69	0	1	1	1	0	0	0	0	0	12445	1856	64	0		0	PPM1L	3	160635668	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	924042	160635668	37386762	127	77470											
GOLIM4	27333	broad.mit.edu	37	chr3	167767247	167767248	+	Intron	INS	-	GAG	GAG													tttgaataggcaccgagggaINSgagaacagagtaaattaaaa					rs143367173	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAG	167767248	GAG	GAG	167767247	6	5	69	0	1	1	1	0	0	0	0	0	6630	319	11	0		0	GOLIM4	3	167767247	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	7131579	167767247	30255183	128	77471											
SPATA16	83893	broad.mit.edu	37	chr3	172674647	172674647	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaacccatttggcatcaAtaacaatatatgacttttta	3	8	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172674647	G	G	172674647	1	3	69	0	1	0	0	0	0	0	0	0	15117	116	4	5		5	SPATA16	3	172674647	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4907400	172674647	25347783	129	77472											
VPS8	23355	broad.mit.edu	37	chr3	184586748	184586748	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttagagagtggatcatctCctgaaacaagattgtcttac	8	7	3	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184586748	G	G	184586748	2	3	69	1	0	0	0	0	0	0	0	1	17345	842	30	4		4	VPS8	3	184586748	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	11912101	184586748	13435682	130	77473											
HRG	3273	broad.mit.edu	37	chr3	186393097	186393098	+	Intron	INS	-	GA	GA													gtgtgtgtgtgtgtgtgtgtINSgagagagagagagagagaga					rs59016663		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	186393098	GA	GA	186393097	6	5	69	0	1	1	1	0	0	0	0	0	7421	1711	59	0		0	HRG	3	186393097	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1806349	186393097	11629333	131	77474											
ST6GAL1	6480	broad.mit.edu	37	chr3	186753726	186753727	+	Intron	INS	-	A	A													ctaaagagcttttgtgcagcINSaaaagaaactatcaacagaa					rs138082077	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186753727	A	A	186753726	6	5	69	0	1	1	1	0	0	0	0	0	15339	725	25	0		0	ST6GAL1	3	186753726	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	360629	186753726	11268704	132	77475											
TP63	8626	broad.mit.edu	37	chr3	189448840	189448840	+	Intron	DEL	A	-	-													tttcttattggactatagatAaagacttagcaccaggcgct					rs145755961		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	189448840	-	-	189448840	6	5	69	0	1	1	0	1	0	0	0	0	16516	377	13	0		0	TP63	3	189448840	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	2695114	189448840	8573590	133	77476											
C3orf59	151963	broad.mit.edu	37	chr3	192587126	192587133	+	Intron	DEL	GGAAGGGA	-	-													ggagggaaaaagggaaggagGgaagggaggaagggaggaag					rs13098415		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	192587133	-	-	192587126	6	5	69	0	1	1	0	1	0	0	0	0	2259	1247	43	0		0	C3orf59	3	192587126	Intron	DEL	GGAAGGGA	TCGA-17-Z040-01A-01W-0746-08	3138286	192587126	5435304	134	77477											
ZNF595	152687	broad.mit.edu	37	chr4	59632	59632	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtttcatcattgcataaaCcatctcttttcttgagctaa	4	9	4	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59632	G	G	59632	1	3	69	0	1	0	0	0	0	0	0	0	18152	522	18	4		4	ZNF595	4	59632	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08		59632	191094644	135	77478											
SORCS2	57537	broad.mit.edu	37	chr4	7403584	7403585	+	Intron	INS	-	T	T													gacttggttgaatcctctccINStttttgttagggataggaag					rs146713776	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7403585	T	T	7403584	6	5	69	0	1	1	1	0	0	0	0	0	15045	696	24	0		0	SORCS2	4	7403584	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	7343952	7403584	183750692	136	77479											
CC2D2A	57545	broad.mit.edu	37	chr4	15482765	15482765	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgagggcacaactcatgAattggttggtgttgtcctct	11	8	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15482765	G	G	15482765	1	3	69	0	1	0	0	0	0	0	0	0	2754	261	9	5		5	CC2D2A	4	15482765	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	8079181	15482765	175671511	137	77480											
CCDC149	91050	broad.mit.edu	37	chr4	24840678	24840685	+	Intron	DEL	ACACACAG	-	-													acacacacacacacacacacAcacacagagagagagagaga					rs71187190		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24840685	-	-	24840678	6	5	69	0	1	1	0	1	0	0	0	0	2809	174	6	0		0	CCDC149	4	24840678	Intron	DEL	ACACACAG	TCGA-17-Z040-01A-01W-0746-08	9357913	24840678	166313598	138	77481											
LIMCH1	22998	broad.mit.edu	37	chr4	41672724	41672724	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttgttctgttctgccAtctgatctagagtcgcctgg	10	10	5	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41672724	G	G	41672724	1	3	69	0	1	0	0	0	0	0	0	0	8869	232	8	5		5	LIMCH1	4	41672724	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	16832046	41672724	149481552	139	77482											
DCAF4L1	285429	broad.mit.edu	37	chr4	41980940	41980941	+	5'Flank	INS	-	AA	AA													agcaagacacacacacacacINSaaaaaaaaacacaaaacaca					rs149526136	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	41980941	AA	AA	41980940	6	5	69	0	1	1	1	0	0	0	0	0	4304	493	17	0		0	DCAF4L1	4	41980940	5'Flank	INS	-	TCGA-17-Z040-01A-01W-0746-08	308216	41980940	149173336	140	77483											
GABRB1	2560	broad.mit.edu	37	chr4	47034104	47034104	+	Intron	DEL	G	-	-													aaatgtcaaaaaaaaaaaaaGaaaaggcatgtcattttcgt					rs67779259		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47034104	-	-	47034104	6	5	69	0	1	1	0	1	0	0	0	0	6226	957	33	0		0	GABRB1	4	47034104	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	5053164	47034104	144120172	141	77484											
PDGFRA	5156	broad.mit.edu	37	chr4	54384959	54384960	+	Intron	INS	-	G	G													accctggtggctgattatttINSggggggcaactgtaacatgg					rs139913013	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54384960	G	G	54384959	6	5	69	0	1	1	1	0	0	0	0	0	11755	1827	63	0		0	PDGFRA	4	54384959	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	7350855	54384959	136769317	142	77485											
KDR	3791	broad.mit.edu	37	chr4	55962393	55962393	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaaccacccacagttactCacctcctggcttggtacagg	7	15	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55962393	T	T	55962393	1	4	69	0	1	0	0	0	0	0	0	0	8209	841	29	4		4	KDR	4	55962393	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1577434	55962393	135191883	143	77486											
KIAA1211	57482	broad.mit.edu	37	chr4	57131567	57131568	+	Intron	DEL	GG	-	-													gtactcaggggtatagaggaGgggtgtgtgtgtgtgtgtgt					rs142231650	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57131568	-	-	57131567	6	5	69	0	1	1	0	1	0	0	0	0	8285	1015	35	0		0	KIAA1211	4	57131567	Intron	DEL	GG	TCGA-17-Z040-01A-01W-0746-08	1169174	57131567	134022709	144	77487											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68930200	68930200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgtgagccaccacaccCggccaccactgctccaattg	9	17	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68930200	A	A	68930200	1	1	69	0	1	0	0	0	0	0	0	0	16366	667	23	1		1	TMPRSS11F	4	68930200	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	11798633	68930200	122224076	145	77488											
COX18	285521	broad.mit.edu	37	chr4	73930892	73930893	+	Intron	INS	-	G	G													aattatgaaaagtatgctttINStttttttttttttttttttt					rs79402424		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73930893	G	G	73930892	6	5	69	0	1	1	1	0	0	0	0	0	3799	1856	64	0		0	COX18	4	73930892	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	5000692	73930892	117223384	146	77489											
ARHGAP24	83478	broad.mit.edu	37	chr4	86531706	86531706	+	Intron	DEL	C	-	-													gaatcaccaacagaaatagaCaaaatgcaaagggtctgaaa					rs67553148		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86531706	-	-	86531706	6	5	69	0	1	1	0	1	0	0	0	0	875	493	17	0		0	ARHGAP24	4	86531706	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	12600814	86531706	104622570	147	77490											
AFF1	4299	broad.mit.edu	37	chr4	88016956	88016957	+	Intron	INS	-	A	A													cttgatggtattgaactcttINSactactttactttcatatga					rs146564534	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88016957	A	A	88016956	6	5	69	0	1	1	1	0	0	0	0	0	356	1769	61	0		0	AFF1	4	88016956	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1485250	88016956	103137320	148	77491											
FAM190A	401145	broad.mit.edu	37	chr4	92284506	92284507	+	Intron	DEL	TT	-	-													tgaagcataggatggagataTtttgtgtgtgtgtgtgtgtg					rs72406328		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92284507	-	-	92284506	6	5	69	0	1	1	0	1	0	0	0	0	5568	1508	52	0		0	FAM190A	4	92284506	Intron	DEL	TT	TCGA-17-Z040-01A-01W-0746-08	4267550	92284506	98869770	149	77492											
GRID2	2895	broad.mit.edu	37	chr4	94411994	94411994	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagtggccaaagctatctGagaataagtatgtggtgtct	12	5	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94411994	A	A	94411994	1	1	69	0	1	0	0	0	0	0	0	0	6838	1305	45	4		4	GRID2	4	94411994	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2127488	94411994	96742282	150	77493											
GRID2	2895	broad.mit.edu	37	chr4	94570006	94570007	+	Intron	INS	-	T	T													attctcttttttttaccatgINSttttttggatttcatatgca					rs142108123	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94570007	T	T	94570006	6	5	69	0	1	1	1	0	0	0	0	0	6838	1392	48	0		0	GRID2	4	94570006	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	158012	94570006	96584270	151	77494											
PDLIM5	10611	broad.mit.edu	37	chr4	95543799	95543799	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctccctccttccctccctCtctccctccctccctccttc	0	28	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95543799	G	G	95543799	1	3	69	0	1	0	0	0	0	0	0	0	11777	928	32	4		4	PDLIM5	4	95543799	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	973793	95543799	95610477	152	77495											
SEC24D	9871	broad.mit.edu	37	chr4	119718977	119718977	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcatttcctgaaacattcAaaaggatacacttaaaactt	5	8	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119718977	C	C	119718977	1	2	69	0	1	0	0	0	0	0	0	0	14110	145	5	5		5	SEC24D	4	119718977	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	24175178	119718977	71435299	153	77496											
KIAA1109	84162	broad.mit.edu	37	chr4	123267610	123267610	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaagggaagtggtactAacagtgttagaatgtgctgt	12	4	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123267610	C	C	123267610	1	2	69	0	1	0	0	0	0	0	0	0	8278	377	13	5		5	KIAA1109	4	123267610	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	3548633	123267610	67886666	154	77497											
ANKRD50	57182	broad.mit.edu	37	chr4	125629847	125629848	+	Intron	DEL	AC	-	-													ttctaagattactaacacatAcacacacacacacacacaca					rs140529823		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125629848	-	-	125629847	6	5	69	0	1	1	0	1	0	0	0	0	677	406	14	0		0	ANKRD50	4	125629847	Intron	DEL	AC	TCGA-17-Z040-01A-01W-0746-08	2362237	125629847	65524429	155	77498											
MFSD8	256471	broad.mit.edu	37	chr4	128869054	128869055	+	Intron	DEL	CT	-	-													cacacacacacacacacacaCtctctctccaacctcataga					rs11942770	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128869055	-	-	128869054	6	5	69	0	1	1	0	1	0	0	0	0	9631	580	20	0		0	MFSD8	4	128869054	Intron	DEL	CT	TCGA-17-Z040-01A-01W-0746-08	3239207	128869054	62285222	156	77499											
MAML3	55534	broad.mit.edu	37	chr4	140963797	140963797	+	Intron	DEL	A	-	-													gattccatctcaaaaaaaagAaaaaaaaaatgtggcaaagt					rs66893477		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140963797	-	-	140963797	6	5	69	0	1	1	0	1	0	0	0	0	9299	261	9	0		0	MAML3	4	140963797	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	12094743	140963797	50190479	157	77500											
UCP1	7350	broad.mit.edu	37	chr4	141484372	141484372	+	Intron	DEL	A	-	-													attgggagtagtccctggggAaaaaaaaaaagaaaatgttt					rs111460010		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141484372	-	-	141484372	6	5	69	0	1	1	0	1	0	0	0	0	17056	261	9	0		0	UCP1	4	141484372	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	520575	141484372	49669904	158	77501											
GYPA	2993	broad.mit.edu	37	chr4	145008944	145008944	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggtccagtgtagttaaacGaggtaaggaaggtgcagcag	16	5	0	0	rs115291273	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145008944	A	A	145008944	1	1	69	0	1	0	0	0	0	0	0	0	6973	1073	37	4		4	GYPA	4	145008944	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3524572	145008944	46145332	159	77502											
OTUD4	54726	broad.mit.edu	37	chr4	146073745	146073745	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attctcagaatgaattccttGaacatctgcattcaaaaatt	4	8	3	3	rs138980387		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146073745	A	A	146073745	4	1	69	1	0	0	0	0	0	1	0	0	11408	1299	45	4	2472	4	OTUD4	4	146073745	Nonsense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1064801	146073745	45080531	160	77503											
DCHS2	54798	broad.mit.edu	37	chr4	155226048	155226048	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtactgacacagaacacaaaGacggtatgaattgtggcctt	10	8	0	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155226048	C	C	155226048	1	2	69	0	1	0	0	0	0	0	0	0	4321	957	33	4		4	DCHS2	4	155226048	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	9152303	155226048	35928228	161	77504											
DCHS2	54798	broad.mit.edu	37	chr4	155341386	155341387	+	Intron	INS	-	AGACAGAC	AGACAGAC													agagaaacagaaccgatgggINSagacagacagacagatagat					rs71600327		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGACAGAC	155341387	AGACAGAC	AGACAGAC	155341386	6	5	69	0	1	1	1	0	0	0	0	0	4321	1189	41	0		0	DCHS2	4	155341386	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	115338	155341386	35812890	162	77505											
PLRG1	5356	broad.mit.edu	37	chr4	155463960	155463960	+	Intron	DEL	T	-	-													aacaaatattgcgtgctctcTctcatatacgggagctaaaa					rs11303940		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155463960	-	-	155463960	6	5	69	0	1	1	0	1	0	0	0	0	12201	1566	54	0		0	PLRG1	4	155463960	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	122574	155463960	35690316	163	77506											
GALNTL6	442117	broad.mit.edu	37	chr4	173530780	173530780	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctctctctctctgtGtgtgtgtgtgtgtgtgtgtg	12	9	4	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173530780	C	C	173530780	1	2	69	0	1	0	0	0	0	0	0	0	6287	1392	48	4		4	GALNTL6	4	173530780	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	18066820	173530780	17623496	164	77507											
SPATA4	132851	broad.mit.edu	37	chr4	177113981	177113981	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgaaattcacaaagtcaTcctggatacttttaattctg	6	9	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177113981	A	A	177113981	3	1	69	1	0	0	0	0	1	0	0	0	15126	1435	50	5	444	5	SPATA4	4	177113981	Missense_Mutation	SNP	T	TCGA-17-Z040-01A-01W-0746-08	3583201	177113981	14040295	165	77508											
VEGFC	7424	broad.mit.edu	37	chr4	177619695	177619695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacactgtgaaatgattacCaaaatcaagctaattaacat	4	7	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177619695	A	A	177619695	1	1	69	0	1	0	0	0	0	0	0	0	17279	609	21	2		2	VEGFC	4	177619695	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	505714	177619695	13534581	166	77509											
CYP4V2	285440	broad.mit.edu	37	chr4	187118275	187118277	+	In_Frame_Del	DEL	ATC	-	-													tcactctttgtgccttagatAtcatctgtggtgagtctcat							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	187118277	-	-	187118275	7	5	69	1	0	1	0	1	0	0	0	0	4225	449	16	0	609	0	CYP4V2	4	187118275	In_Frame_Del	DEL	ATC	TCGA-17-Z040-01A-01W-0746-08	9498580	187118275	4036001	167	77510											
FRG1	2483	broad.mit.edu	37	chr4	190871390	190871390	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttttgaattgtggtatttGtctttttggagttctctata	9	3	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190871390	A	A	190871390	1	1	69	0	1	0	0	0	0	0	0	0	6106	1392	48	4		4	FRG1	4	190871390	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3753115	190871390	282886	168	77511											
LRRC14B	389257	broad.mit.edu	37	chr5	194830	194830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgtcctgcagccccctaCagaccccgctgcgagtactg	10	18	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194830	A	A	194830	3	1	69	1	0	0	0	0	1	0	0	0	9056	479	17	3	913	3	LRRC14B	5	194830	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08		194830	180720430	169	77512											
AHRR	57491	broad.mit.edu	37	chr5	428103	428103	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacccagagcagacaccgCagccaccgcggatgcaaagt	10	14	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	428103	T	T	428103	3	4	69	1	0	0	0	0	1	0	0	0	417	710	25	4	990	4	AHRR	5	428103	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	233273	428103	180487157	170	77513											
CTNND2	1501	broad.mit.edu	37	chr5	11163045	11163046	+	Intron	DEL	AT	-	-													atacagacacacacacacacAtgtcttgactgacggaagag					rs149920242		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11163046	-	-	11163045	6	5	69	0	1	1	0	1	0	0	0	0	4054	232	8	0		0	CTNND2	5	11163045	Intron	DEL	AT	TCGA-17-Z040-01A-01W-0746-08	10734942	11163045	169752215	171	77514											
CTNND2	1501	broad.mit.edu	37	chr5	11397125	11397125	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtccactgacaccatAcagcactgggtacctacctg	9	13	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11397125	G	G	11397125	1	3	69	0	1	0	0	0	0	0	0	0	4054	406	14	5		5	CTNND2	5	11397125	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	234080	11397125	169518135	172	77515											
TRIO	7204	broad.mit.edu	37	chr5	14348960	14348961	+	Intron	INS	-	TG	TG													tgtgtgtacgcacgtgagcaINStgtttttcctgtatatgtgt					rs145514589	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	14348961	TG	TG	14348960	6	5	69	0	1	1	1	0	0	0	0	0	16677	232	8	0		0	TRIO	5	14348960	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	2951835	14348960	166566300	173	77516											
CDH12	1010	broad.mit.edu	37	chr5	21880572	21880572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctttccttccttccttcCttctttccttccttccttcc	0	19	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21880572	T	T	21880572	1	4	69	0	1	0	0	0	0	0	0	0	3128	696	24	4		4	CDH12	5	21880572	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	7531612	21880572	159034688	174	77517											
CDH12	1010	broad.mit.edu	37	chr5	22202275	22202278	+	Intron	DEL	CCTC	-	-													ctttccttccttccttccttCctcccttccttccttccttc					rs72243697		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22202278	-	-	22202275	6	5	69	0	1	1	0	1	0	0	0	0	3128	870	30	0		0	CDH12	5	22202275	Intron	DEL	CCTC	TCGA-17-Z040-01A-01W-0746-08	321703	22202275	158712985	175	77518											
CDH6	1004	broad.mit.edu	37	chr5	31317548	31317548	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaccaattttcgttttccTtggcccctgaagcagccagt	8	13	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31317548	G	G	31317548	3	3	69	1	0	0	0	0	1	0	0	0	3144	1606	56	5	1613	5	CDH6	5	31317548	Missense_Mutation	SNP	T	TCGA-17-Z040-01A-01W-0746-08	9115273	31317548	149597712	176	77519											
AGXT2	64902	broad.mit.edu	37	chr5	35013906	35013906	+	Intron	DEL	G	-	-													tcaaaaaaaaaaaaaaaaaaGggctggctttcttccaactg					rs79432192		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35013906	-	-	35013906	6	5	69	0	1	1	0	1	0	0	0	0	405	1015	35	0		0	AGXT2	5	35013906	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	3696358	35013906	145901354	177	77520											
C5orf42	65250	broad.mit.edu	37	chr5	37173990	37173990	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttgtgaagcaacattgactCcatttgatatcagaagtgga	10	6	1	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37173990	G	G	37173990	3	3	69	1	0	0	0	0	1	0	0	0	2324	855	30	4	3639	4	C5orf42	5	37173990	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2160084	37173990	143741270	178	77521											
C5orf42	65250	broad.mit.edu	37	chr5	37176144	37176144	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatattctttgcattatctaAggtatgagtgatctatgctc	8	6	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37176144	T	T	37176144	1	4	69	0	1	0	0	0	0	0	0	0	2324	87	3	5		5	C5orf42	5	37176144	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	2154	37176144	143739116	179	77522											
IPO11	51194	broad.mit.edu	37	chr5	61772530	61772530	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagaagtataggtacagatAatgtgtgtagagatagactg	13	2	0	4	rs35107530	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61772530	G	G	61772530	3	3	69	1	0	0	0	0	1	0	0	0	7863	362	13	5	932	5	IPO11	5	61772530	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	24596386	61772530	119142730	180	77523											
RGMB	285704	broad.mit.edu	37	chr5	98128864	98128864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgacagatgacctgccgGccgcctttgtggatggcacc	13	13	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98128864	T	T	98128864	3	4	69	1	0	0	0	0	1	0	0	0	13389	1203	42	3	858	3	RGMB	5	98128864	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	36356334	98128864	82786396	181	77524											
SLCO4C1	353189	broad.mit.edu	37	chr5	101606534	101606534	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggaaaaaaaaattgtgaAtttatagaaattcagctaat	7	2	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101606534	G	G	101606534	1	3	69	0	1	0	0	0	0	0	0	0	14844	116	4	5		5	SLCO4C1	5	101606534	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	3477670	101606534	79308726	182	77525											
PAM	5066	broad.mit.edu	37	chr5	102360820	102360820	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagttgaatattgtgaactCttctttccctgaagaagccg	8	9	3	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102360820	A	A	102360820	1	1	69	0	1	0	0	0	0	0	0	0	11506	928	32	3		3	PAM	5	102360820	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	754286	102360820	78554440	183	77526											
CAMK4	814	broad.mit.edu	37	chr5	110714603	110714603	+	Intron	DEL	C	-	-													gatactcttgttcacatgttCccatgtcctcaagcaagagt					rs67546812		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110714603	-	-	110714603	6	5	69	0	1	1	0	1	0	0	0	0	2631	870	30	0		0	CAMK4	5	110714603	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	8353783	110714603	70200657	184	77527											
SLC12A2	6558	broad.mit.edu	37	chr5	127485706	127485706	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgaactgaatgttattGcaccaattatctcaaacttc	5	10	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127485706	A	A	127485706	3	1	69	1	0	0	0	0	1	0	0	0	14496	1319	46	4	2073	4	SLC12A2	5	127485706	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	16771103	127485706	53429554	185	77528											
SLC27A6	28965	broad.mit.edu	37	chr5	128329559	128329559	+	Intron	DEL	G	-	-													gcctgtaatcccagcactttGggaggccaaggtgggcagat							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128329559	-	-	128329559	6	5	69	0	1	1	0	1	0	0	0	0	14644	1363	47	0		0	SLC27A6	5	128329559	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	843853	128329559	52585701	186	77529											
FSTL4	23105	broad.mit.edu	37	chr5	132561628	132561628	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaagtaggtgactggagttCtgtgtttaaccaaattataa	9	6	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132561628	T	T	132561628	1	4	69	0	1	0	0	0	0	0	0	0	6139	928	32	4		4	FSTL4	5	132561628	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	4232069	132561628	48353632	187	77530											
WNT8A	7478	broad.mit.edu	37	chr5	137423338	137423339	+	Intron	INS	-	AA	AA													ctggtgacagagcgagtctcINSaaaaaaaaaaaaaaaaaaaa					rs66902804		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	137423339	AA	AA	137423338	6	5	69	0	1	1	1	0	0	0	0	0	17523	841	29	0		0	WNT8A	5	137423338	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	4861710	137423338	43491922	188	77531											
PCDHA11	56138	broad.mit.edu	37	chr5	140250227	140250227	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcggtgcacgcggagagCggcaaggtgtacgcgctgca	18	10	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140250227	G	G	140250227	3	3	69	1	0	0	0	0	1	0	0	0	11615	767	27	4	1541	4	PCDHA11	5	140250227	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2826889	140250227	40665033	189	77532											
ARHGAP26	23092	broad.mit.edu	37	chr5	142540040	142540041	+	Intron	INS	-	T	T													gaagttgttgcttttggtggINStttttttttctttctttttt					rs141312921	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142540041	T	T	142540040	6	5	69	0	1	1	1	0	0	0	0	0	877	1276	44	0		0	ARHGAP26	5	142540040	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	2289813	142540040	38375220	190	77533											
PPP2R2B	5521	broad.mit.edu	37	chr5	146085777	146085777	+	Intron	SNP	A	G	G													ctgccgcagctgttcacttgAgcaggaaatcagaggacacc							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146085777	G	G	146085777	1	3	69	0	1	0	0	0	0	0	0	0	12486	319	11	5		5	PPP2R2B	5	146085777	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	3545737	146085777	34829483	191	77534	354	2									
PPP2R2B	5521	broad.mit.edu	37	chr5	146085784	146085784	+	Intron	SNP	A	C	C													agctgttcacttgagcaggaAatcagaggacaccagcttcc							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146085784	C	C	146085784	1	2	69	0	1	0	0	0	0	0	0	0	12486	29	1	5		5	PPP2R2B	5	146085784	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	7	146085784	34829476	192	77535	354	2									
SCGB3A2	117156	broad.mit.edu	37	chr5	147256971	147256973	+	5'Flank	DEL	AAA	-	-													ttataaagtagcagaaagatAaagaaatgacagttacaaca							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147256973	-	-	147256971	6	5	69	0	1	1	0	1	0	0	0	0	14014	377	13	0		0	SCGB3A2	5	147256971	5'Flank	DEL	AAA	TCGA-17-Z040-01A-01W-0746-08	1171187	147256971	33658289	193	77536											
SLC36A1	206358	broad.mit.edu	37	chr5	150846882	150846882	+	Intron	DEL	C	-	-													aaagaaaaaaaaaaaaaaaaCcagagcgagaatggcaaaag					rs61191955	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150846882	-	-	150846882	6	5	69	0	1	1	0	1	0	0	0	0	14707	522	18	0		0	SLC36A1	5	150846882	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	3589911	150846882	30068378	194	77537											
SPARC	6678	broad.mit.edu	37	chr5	151053571	151053574	+	Intron	DEL	TTGT	-	-													gtgtgtgtgtgtgtgtgtgcTtgtttgtttgtttgtttttg							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151053574	-	-	151053571	6	5	69	0	1	1	0	1	0	0	0	0	15111	1624	56	0		0	SPARC	5	151053571	Intron	DEL	TTGT	TCGA-17-Z040-01A-01W-0746-08	206689	151053571	29861689	195	77538											
FAM71B	153745	broad.mit.edu	37	chr5	156592666	156592666	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtggcctcaggagatagaCaagtttttcccaatagcaaa	10	8	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156592666	T	T	156592666	3	4	69	1	0	0	0	0	1	0	0	0	5659	478	17	4	1311	4	FAM71B	5	156592666	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5539095	156592666	24322594	196	77539											
FAM71B	153745	broad.mit.edu	37	chr5	156593331	156593331	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtcctttgtgacctgtgCgcatctcacacccctttgtc	8	15	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156593331	T	T	156593331	1	4	69	0	1	0	0	0	0	0	0	0	5659	783	27	4		4	FAM71B	5	156593331	5'Flank	SNP	C	TCGA-17-Z040-01A-01W-0746-08	665	156593331	24321929	197	77540											
RNF145	153830	broad.mit.edu	37	chr5	158630641	158630641	+	5'UTR	DEL	C	-	-													gccatgttgtttttttttttCtttttttttttcttggagaa					rs74841177		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158630641	-	-	158630641	6	5	69	0	1	1	0	1	0	0	0	0	13558	912	32	0		0	RNF145	5	158630641	5'UTR	DEL	C	TCGA-17-Z040-01A-01W-0746-08	2037310	158630641	22284619	198	77541											
DOCK2	1794	broad.mit.edu	37	chr5	169140992	169140992	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgtggcattgggcatGgagccttggcttggggcagt	17	8	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169140992	A	A	169140992	1	1	69	0	1	0	0	0	0	0	0	0	4727	1363	47	4		4	DOCK2	5	169140992	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	10510351	169140992	11774268	199	77542											
LCP2	3937	broad.mit.edu	37	chr5	169683562	169683562	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggtggcagggaggcactcTgtggaaaactgctgttactg	15	7	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169683562	A	A	169683562	3	1	69	1	0	0	0	0	1	0	0	0	8764	1580	55	5	503	5	LCP2	5	169683562	Missense_Mutation	SNP	T	TCGA-17-Z040-01A-01W-0746-08	542570	169683562	11231698	200	77543											
KCNIP1	30820	broad.mit.edu	37	chr5	169990637	169990639	+	Intron	DEL	TTT	-	-													gctagttttaaggtgttttgTttttttttttgtttgtttgt					rs141440921		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169990639	-	-	169990637	6	5	69	0	1	1	0	1	0	0	0	0	8109	1740	60	0		0	KCNIP1	5	169990637	Intron	DEL	TTT	TCGA-17-Z040-01A-01W-0746-08	307075	169990637	10924623	201	77544											
NOP16	51491	broad.mit.edu	37	chr5	175812216	175812216	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcccacggggcctgagccGctcaccttatagtcctcccc	9	19	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175812216	A	A	175812216	1	1	69	0	1	0	0	0	0	0	0	0	10632	1102	38	4		4	NOP16	5	175812216	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	5821579	175812216	5103044	202	77545											
DUSP22	56940	broad.mit.edu	37	chr6	334412	334412	+	Intron	DEL	A	-	-													aaacagccatttttttttttAaataaatctcacatttagca					rs143312900		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	334412	-	-	334412	6	5	69	0	1	1	0	1	0	0	0	0	4861	377	13	0		0	DUSP22	6	334412	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08		334412	170780655	203	77546											
C6orf195	154386	broad.mit.edu	37	chr6	2632703	2632703	+	Intron	DEL	G	-	-													acagcaactctgcagcccccGaccccagccctggcgtccca					rs61324601		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2632703	-	-	2632703	6	5	69	0	1	1	0	1	0	0	0	0	2373	1073	37	0		0	C6orf195	6	2632703	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	2298291	2632703	168482364	204	77547											
NEDD9	4739	broad.mit.edu	37	chr6	11325003	11325004	+	Intron	INS	-	C	C													caagtgtgttttgtctatgaINStgagttagctggggaggggg					rs141817571	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11325004	C	C	11325003	6	5	69	0	1	1	1	0	0	0	0	0	10408	348	12	0		0	NEDD9	6	11325003	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	8692300	11325003	159790064	205	77548											
NUP153	9972	broad.mit.edu	37	chr6	17625940	17625940	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaaaaggcattcccacCattttgtgataacctgctat	6	11	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17625940	T	T	17625940	1	4	69	0	1	0	0	0	0	0	0	0	10850	609	21	4		4	NUP153	6	17625940	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	6300937	17625940	153489127	206	77549											
MBOAT1	154141	broad.mit.edu	37	chr6	20212354	20212354	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggggtcgctgcgctcccGgcctgcagttacctggtcca	14	15	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20212354	A	A	20212354	1	1	69	0	1	0	0	0	0	0	0	0	9449	1131	39	4		4	MBOAT1	6	20212354	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2586414	20212354	150902713	207	77550											
CDKAL1	54901	broad.mit.edu	37	chr6	20675030	20675031	+	Intron	DEL	AT	-	-													aacttatttagctctcacacAtgagtgagaagatgcagcat							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20675031	-	-	20675030	6	5	69	0	1	1	0	1	0	0	0	0	3182	232	8	0		0	CDKAL1	6	20675030	Intron	DEL	AT	TCGA-17-Z040-01A-01W-0746-08	462676	20675030	150440037	208	77551											
DCDC2	51473	broad.mit.edu	37	chr6	24185953	24185956	+	Intron	DEL	ACAT	-	-													acacacacacacacacacacAcatatacacacagataaaat					rs57262857		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24185956	-	-	24185953	6	5	69	0	1	1	0	1	0	0	0	0	4318	174	6	0		0	DCDC2	6	24185953	Intron	DEL	ACAT	TCGA-17-Z040-01A-01W-0746-08	3510923	24185953	146929114	209	77552											
HMGN4	10473	broad.mit.edu	37	chr6	26545565	26545565	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcccaggcctaaaaaggCctctgcaaagaagggagaga	13	9	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26545565	T	T	26545565	3	4	69	1	0	0	0	0	1	0	0	0	7304	739	26	4	133	4	HMGN4	6	26545565	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2359612	26545565	144569502	210	77553											
GABBR1	2550	broad.mit.edu	37	chr6	29589092	29589092	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatacagaggagaatggctGagtttttgtttgctcatttg	12	4	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29589092	A	A	29589092	1	1	69	0	1	0	0	0	0	0	0	0	6215	1305	45	4		4	GABBR1	6	29589092	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3043527	29589092	141525975	211	77554											
HLA-G	3135	broad.mit.edu	37	chr6	29798236	29798237	+	Intron	DNP	GG	TT	TT													atccttgggatcttgtgtttGggagcccatgggggagctca							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	29798237	TT	TT	29798236	1	4	69	0	1	0	0	0	0	0	0	0	7279	1363	47	2		2	HLA-G	6	29798236	Intron	DNP	GG	TCGA-17-Z040-01A-01W-0746-08	209144	29798236	141316831	212	77555											
TRIM10	10107	broad.mit.edu	37	chr6	30128213	30128213	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccctttcctaccctataGggagccgctgcatcctccag	7	17	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30128213	A	A	30128213	2	1	69	1	0	0	0	0	0	0	0	1	16610	987	35	4		4	TRIM10	6	30128213	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	329977	30128213	140986854	213	77556											
C6orf134	79969	broad.mit.edu	37	chr6	30608890	30608893	+	Intron	DEL	ACAT	-	-													attccccatcccatatacacAcatacacacacacacacaca					rs3130038		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30608893	-	-	30608890	6	5	69	0	1	1	0	1	0	0	0	0	2353	174	6	0		0	C6orf134	6	30608890	Intron	DEL	ACAT	TCGA-17-Z040-01A-01W-0746-08	480677	30608890	140506177	214	77557											
SFRS3	6428	broad.mit.edu	37	chr6	36564705	36564705	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttttgttgaatttgaagatCcccgagatgcagctgatgca	10	8	0	5			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36564705	T	T	36564705	3	4	69	1	0	0	0	0	1	0	0	0	14291	855	30	4	168	4	SFRS3	6	36564705	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5955815	36564705	134550362	215	77558											
ZFAND3	60685	broad.mit.edu	37	chr6	38005925	38005925	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattaatcagctggcccgagGcctctagtctttcacatctt	8	12	5	0	rs115718822	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38005925	A	A	38005925	1	1	69	0	1	0	0	0	0	0	0	0	17755	1218	42	4		4	ZFAND3	6	38005925	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1441220	38005925	133109142	216	77559											
DNAH8	1769	broad.mit.edu	37	chr6	38816444	38816444	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaatgctccatttaaaaAaaatatccagaattgggtgt	6	6	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38816444	C	C	38816444	3	2	69	1	0	0	0	0	1	0	0	0	4647	14	1	5	4545	5	DNAH8	6	38816444	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	810519	38816444	132298623	217	77560											
PKHD1	5314	broad.mit.edu	37	chr6	51790253	51790254	+	Intron	INS	-	TG	TG													ttcgtgtgtgtgtgtgtgtaINStgtgtgtgtgtgtgtgtgtg					rs1160482		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	51790254	TG	TG	51790253	6	5	69	0	1	1	1	0	0	0	0	0	12066	464	16	0		0	PKHD1	6	51790253	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	12973809	51790253	119324814	218	77561											
DST	667	broad.mit.edu	37	chr6	56736076	56736076	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgttcactttaagaacactCgtgaaactgcccaggacacc	8	12	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56736076	T	T	56736076	1	4	69	0	1	0	0	0	0	0	0	0	4823	899	31	4		4	DST	6	56736076	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	4945823	56736076	114378991	219	77562											
PRIM2	5558	broad.mit.edu	37	chr6	57398118	57398119	+	Intron	INS	-	T	T													cttaacttaaaactctactgINSttttttcttgtagctttcta					rs147643173		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398119	T	T	57398118	6	5	69	0	1	1	1	0	0	0	0	0	12597	1392	48	0		0	PRIM2	6	57398118	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	662042	57398118	113716949	220	77563											
PRIM2	5558	broad.mit.edu	37	chr6	57465739	57465739	+	Intron	DEL	G	-	-													gtctactatagcattaggaaGgctatcaacccattattctg					rs67106455		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57465739	-	-	57465739	6	5	69	0	1	1	0	1	0	0	0	0	12597	1015	35	0		0	PRIM2	6	57465739	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	67621	57465739	113649328	221	77564											
COL19A1	1310	broad.mit.edu	37	chr6	70637878	70637878	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgaagaaacgccaaaaaggAacggtggtttctgtggcagg	14	7	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70637878	T	T	70637878	3	4	69	1	0	0	0	0	1	0	0	0	3708	246	9	5	358	5	COL19A1	6	70637878	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	13172139	70637878	100477189	222	77565											
COL19A1	1310	broad.mit.edu	37	chr6	70840125	70840125	+	Intron	DEL	T	-	-													aaggagacaaggtaatcagaTtttttttttttagatggagt							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70840125	-	-	70840125	6	5	69	0	1	1	0	1	0	0	0	0	3708	1508	52	0		0	COL19A1	6	70840125	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	202247	70840125	100274942	223	77566											
TMEM30A	55754	broad.mit.edu	37	chr6	75970705	75970705	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagctatccctaaattactGattaagaattcaacacctat	4	9	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75970705	A	A	75970705	1	1	69	0	1	0	0	0	0	0	0	0	16276	1305	45	4		4	TMEM30A	6	75970705	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	5130580	75970705	95144362	224	77567											
KLHL32	114792	broad.mit.edu	37	chr6	97587157	97587157	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcacaggattggcaccatctGaaaagccaagccatcatgaa	8	11	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97587157	C	C	97587157	4	2	69	1	0	0	0	0	0	0	0	0	8457	1285	45	4	1900	4	KLHL32	6	97587157	Nonstop_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	21616452	97587157	73527910	225	77568											
SIM1	6492	broad.mit.edu	37	chr6	100838300	100838300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgctgggtctggttgcatCctcagatgggaagttacatc	13	8	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100838300	A	A	100838300	3	1	69	1	0	0	0	0	1	0	0	0	14436	854	30	3	66	3	SIM1	6	100838300	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3251143	100838300	70276767	226	77569											
LIN28B	389421	broad.mit.edu	37	chr6	105474353	105474353	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaagaaaaccaaagggaGataggtaatcatttttactt	8	4	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105474353	T	T	105474353	3	4	69	1	0	0	0	0	1	0	0	0	8879	942	33	3	389	3	LIN28B	6	105474353	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	4636053	105474353	65640714	227	77570											
KIAA1919	91749	broad.mit.edu	37	chr6	111583373	111583373	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccagaccctccgccccccTttttttttatagtggaagaa	6	14	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111583373	C	C	111583373	1	2	69	0	1	0	0	0	0	0	0	0	8332	1624	56	5		5	KIAA1919	6	111583373	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	6109020	111583373	59531694	228	77571											
DSE	29940	broad.mit.edu	37	chr6	116622339	116622339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagggagggagggagggagAgagagagagagagatccaga	22	2	0	6			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116622339	G	G	116622339	1	3	69	0	1	0	0	0	0	0	0	0	4814	319	11	5		5	DSE	6	116622339	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	5038966	116622339	54492728	229	77572											
TRDN	10345	broad.mit.edu	37	chr6	123957844	123957844	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgacagttaatgtggctgTcgatttgcatattttttttc	8	6	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123957844	G	G	123957844	1	3	69	0	1	0	0	0	0	0	0	0	16592	1682	58	5		5	TRDN	6	123957844	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	7335505	123957844	47157223	230	77573											
TAAR2	9287	broad.mit.edu	37	chr6	132939196	132939196	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgaatatggatcctgccAtaaatgaatacatagccact	7	8	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132939196	G	G	132939196	3	3	69	1	0	0	0	0	1	0	0	0	15609	217	8	5	910	5	TAAR2	6	132939196	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	8981352	132939196	38175871	231	77574											
AGR3	155465	broad.mit.edu	37	chr7	16901524	16901524	+	Intron	DEL	A	-	-													gacagagcgagactctgtctAaaaaaaaaaaaaaaaaagaa					rs71551762		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16901524	-	-	16901524	6	5	69	0	1	1	0	1	0	0	0	0	396	377	13	0		0	AGR3	7	16901524	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08		16901524	142237139	232	77575											
HDAC9	9734	broad.mit.edu	37	chr7	18462364	18462365	+	Intron	DEL	CG	-	-													ttagctttaagacacacacaCgcgcacacacacacacacac					rs10524785		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18462365	-	-	18462364	6	5	69	0	1	1	0	1	0	0	0	0	7081	551	19	0		0	HDAC9	7	18462364	Intron	DEL	CG	TCGA-17-Z040-01A-01W-0746-08	1560840	18462364	140676299	233	77576											
HDAC9	9734	broad.mit.edu	37	chr7	18818554	18818554	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgggagatggtttgtggtaGagcattaatgcacatggcat	14	6	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18818554	T	T	18818554	1	4	69	0	1	0	0	0	0	0	0	0	7081	957	33	3		3	HDAC9	7	18818554	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	356190	18818554	140320109	234	77577											
RAPGEF5	9771	broad.mit.edu	37	chr7	22305301	22305301	+	Intron	DEL	A	-	-													catagtggctgtactaatttAacattcccaccaacagttta					rs5882839		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22305301	-	-	22305301	6	5	69	0	1	1	0	1	0	0	0	0	13155	377	13	0		0	RAPGEF5	7	22305301	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	3486747	22305301	136833362	235	77578											
FAM126A	84668	broad.mit.edu	37	chr7	22980929	22980930	+	3'UTR	INS	-	AC	AC													gaggcaacacttgttgtataINSaagtactacatatggagaac					rs35708583		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	22980930	AC	AC	22980929	6	5	69	0	1	1	1	0	0	0	0	0	5475	377	13	0		0	FAM126A	7	22980929	3'UTR	INS	-	TCGA-17-Z040-01A-01W-0746-08	675628	22980929	136157734	236	77579											
C7orf30	115416	broad.mit.edu	37	chr7	23347398	23347398	+	Intron	DEL	C	-	-													gtaagaaagattaaaaaaaaCaaacaaacaaacaaaaaaaa					rs112007740		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23347398	-	-	23347398	6	5	69	0	1	1	0	1	0	0	0	0	2411	493	17	0		0	C7orf30	7	23347398	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	366469	23347398	135791265	237	77580											
OSBPL3	26031	broad.mit.edu	37	chr7	24846310	24846310	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttccacctttctcaggtgCctctggtggcctaaggattg	10	11	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24846310	T	T	24846310	1	4	69	0	1	0	0	0	0	0	0	0	11373	754	26	4		4	OSBPL3	7	24846310	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1498912	24846310	134292353	238	77581											
HOXA1	3198	broad.mit.edu	37	chr7	27134054	27134054	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgttgtctggggctggagCcgcctcagtgggaggtagtc	18	9	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27134054	T	T	27134054	1	4	69	0	1	0	0	0	0	0	0	0	7355	754	26	4		4	HOXA1	7	27134054	3'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2287744	27134054	132004609	239	77582											
FAM188B	84182	broad.mit.edu	37	chr7	30805809	30805810	+	Intron	DEL	TC	-	-													gtatggtgatggatatgattTctcacacacacacacacaca					rs146676127	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30805810	-	-	30805809	6	5	69	0	1	1	0	1	0	0	0	0	5561	1798	62	0		0	FAM188B	7	30805809	Intron	DEL	TC	TCGA-17-Z040-01A-01W-0746-08	3671755	30805809	128332854	240	77583											
PDE1C	5137	broad.mit.edu	37	chr7	32271568	32271569	+	Intron	DEL	TA	-	-													ttaaaacaaataaatatgtgTatacacacacacacacacac					rs112437285		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32271569	-	-	32271568	6	5	69	0	1	1	0	1	0	0	0	0	11729	1653	57	0		0	PDE1C	7	32271568	Intron	DEL	TA	TCGA-17-Z040-01A-01W-0746-08	1465759	32271568	126867095	241	77584											
FKBP9	11328	broad.mit.edu	37	chr7	33014332	33014332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaaacgagagacgtttcGtgaagattcccccaaagctt	10	10	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33014332	T	T	33014332	3	4	69	1	0	0	0	0	1	0	0	0	5972	1145	40	3	331	3	FKBP9	7	33014332	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	742764	33014332	126124331	242	77585											
BBS9	27241	broad.mit.edu	37	chr7	33606349	33606349	+	Intron	DEL	A	-	-													gcatttttgccaaaagttatAaaacacatatgttattaata					rs74366097		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33606349	-	-	33606349	6	5	69	0	1	1	0	1	0	0	0	0	1347	377	13	0		0	BBS9	7	33606349	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	592017	33606349	125532314	243	77586											
NPSR1	387129	broad.mit.edu	37	chr7	34698106	34698106	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttccccagtggcttgcactGaaacagtgacttttactgaa	8	11	0	3	rs145130538		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34698106	A	A	34698106	3	1	69	1	0	0	0	0	1	0	0	0	10695	1291	45	4	84	4	NPSR1	7	34698106	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1091757	34698106	124440557	244	77587											
AOAH	313	broad.mit.edu	37	chr7	36630695	36630696	+	Intron	DEL	AG	-	-													ttgcaactcagattccaaacAgagaatttccttttccatta					rs145058108		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36630696	-	-	36630695	6	5	69	0	1	1	0	1	0	0	0	0	728	203	7	0		0	AOAH	7	36630695	Intron	DEL	AG	TCGA-17-Z040-01A-01W-0746-08	1932589	36630695	122507968	245	77588											
TXNDC3	51314	broad.mit.edu	37	chr7	37887511	37887516	+	5'Flank	DEL	GAAGAA	-	-													aagaggaagaagaggaagagGaagaagaagaggaagaagaa							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37887516	-	-	37887511	6	5	69	0	1	1	0	1	0	0	0	0	16924	1189	41	0		0	TXNDC3	7	37887511	5'Flank	DEL	GAAGAA	TCGA-17-Z040-01A-01W-0746-08	1256816	37887511	121251152	246	77589											
RALA	5898	broad.mit.edu	37	chr7	39726463	39726463	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttttggtgctattttgtatgGattgtttgaatccttgaaat	9	3	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39726463	C	C	39726463	1	2	69	0	1	0	0	0	0	0	0	0	13118	1189	41	4		4	RALA	7	39726463	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1838952	39726463	119412200	247	77590											
HECW1	23072	broad.mit.edu	37	chr7	43179412	43179413	+	Intron	INS	-	G	G													ggctttcatctttggaaaaaINSgggcaaatttggggatcaga					rs149877578	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43179413	G	G	43179412	6	5	69	0	1	1	1	0	0	0	0	0	7109	87	3	0		0	HECW1	7	43179412	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	3452949	43179412	115959251	248	77591											
TYW1	55253	broad.mit.edu	37	chr7	66549512	66549513	+	Intron	INS	-	T	T													atgcttttttttctttcttcINSttttttttttttggaccaga					rs11445938		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66549513	T	T	66549512	6	5	69	0	1	1	1	0	0	0	0	0	16944	928	32	0		0	TYW1	7	66549512	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	23370100	66549512	92589151	249	77592											
STX1A	6804	broad.mit.edu	37	chr7	73114762	73114762	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgaagatgcccccaacagtgGaggcgatgacgatgcccagg	14	12	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73114762	C	C	73114762	3	2	69	1	0	0	0	0	1	0	0	0	15461	1174	41	4	28	4	STX1A	7	73114762	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	6565250	73114762	86023901	250	77593											
MAGI2	9863	broad.mit.edu	37	chr7	78470469	78470470	+	Intron	INS	-	A	A													ttgaaaaattacctacactcINSactgtctctagttccacatt					rs145221257	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78470470	A	A	78470469	6	5	69	0	1	1	1	0	0	0	0	0	9283	841	29	0		0	MAGI2	7	78470469	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	5355707	78470469	80668194	251	77594											
CROT	54677	broad.mit.edu	37	chr7	86990993	86990994	+	Intron	INS	-	G	G													tgaacacttcagttgtggctINSggtttttaaattttataatg					rs149947132	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86990994	G	G	86990993	6	5	69	0	1	1	1	0	0	0	0	0	3926	1595	55	0		0	CROT	7	86990993	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	8520524	86990993	72147670	252	77595											
DYNC1I1	1780	broad.mit.edu	37	chr7	95692442	95692445	+	Intron	DEL	TGTA	-	-													tgtgtgtgtgtgtgtgtgtgTgtatgtgtgtgttttctttc					rs112885345		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95692445	-	-	95692442	6	5	69	0	1	1	0	1	0	0	0	0	4882	1711	59	0		0	DYNC1I1	7	95692442	Intron	DEL	TGTA	TCGA-17-Z040-01A-01W-0746-08	8701449	95692442	63446221	253	77596											
PDAP1	11333	broad.mit.edu	37	chr7	98994205	98994205	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggggctcctggccatgaGgggctgttgcagcggcgcca	19	11	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98994205	T	T	98994205	1	4	69	0	1	0	0	0	0	0	0	0	11707	1015	35	2		2	PDAP1	7	98994205	3'UTR	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3301763	98994205	60144458	254	77597											
FBXL13	222235	broad.mit.edu	37	chr7	102713945	102713947	+	Intron	DEL	ATA	-	-													gtgtctcaataataatgatgAtaataataatatgtcttgga					rs10534393		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102713947	-	-	102713945	6	5	69	0	1	1	0	1	0	0	0	0	5766	348	12	0		0	FBXL13	7	102713945	Intron	DEL	ATA	TCGA-17-Z040-01A-01W-0746-08	3719740	102713945	56424718	255	77598											
MET	4233	broad.mit.edu	37	chr7	116412043	116412043	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accgagctacttttccagaaGgtatatttcagtttattgtt	7	7	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116412043	C	C	116412043	3	2	69	1	0	0	0	0	1	0	0	0	9578	1014	35	4	3132	4	MET	7	116412043	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	13698098	116412043	42726620	256	77599											
GRM8	2918	broad.mit.edu	37	chr7	126646351	126646353	+	Intron	DEL	TCC	-	-													ttttcccctcctttgctgctTcctcttcagttttcctctct					rs80337709		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126646353	-	-	126646351	6	5	69	0	1	1	0	1	0	0	0	0	6869	1798	62	0		0	GRM8	7	126646351	Intron	DEL	TCC	TCGA-17-Z040-01A-01W-0746-08	10234308	126646351	32492312	257	77600											
FLNC	2318	broad.mit.edu	37	chr7	128481584	128481584	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagttcaccattgatgctcGtgcagctggcaagggagacc	13	10	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128481584	A	A	128481584	3	1	69	1	0	0	0	0	1	0	0	0	5993	1145	40	4	2134	4	FLNC	7	128481584	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1835233	128481584	30657079	258	77601											
FLNC	2318	broad.mit.edu	37	chr7	128486640	128486640	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcaggggtgaggcaggagCagaccccctccaggacccca	13	15	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128486640	T	T	128486640	1	4	69	0	1	0	0	0	0	0	0	0	5993	725	25	4		4	FLNC	7	128486640	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5056	128486640	30652023	259	77602											
PLXNA4	91584	broad.mit.edu	37	chr7	131956190	131956191	+	Intron	INS	-	A	A													aggaactttagtcacttaggINSaaaaaaaaaaaaaaaagaaa					rs140262314		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131956191	A	A	131956190	6	5	69	0	1	1	1	0	0	0	0	0	12217	1189	41	0		0	PLXNA4	7	131956190	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	3469550	131956190	27182473	260	77603											
CHCHD3	54927	broad.mit.edu	37	chr7	132660978	132660979	+	Intron	INS	-	CT	CT													gcctttcaactgcagggctcINSctcacttctggaatgactcc					rs147435059	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	132660979	CT	CT	132660978	6	5	69	0	1	1	1	0	0	0	0	0	3348	870	30	0		0	CHCHD3	7	132660978	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	704788	132660978	26477685	261	77604											
PCM1	5108	broad.mit.edu	37	chr8	17818042	17818042	+	Intron	DEL	C	-	-													tcttttttgtttttgtttttCtttttttttgaggcagagtc					rs11984528		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17818042	-	-	17818042	6	5	69	0	1	1	0	1	0	0	0	0	11678	928	32	0		0	PCM1	8	17818042	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08		17818042	128545980	262	77605											
SORBS3	10174	broad.mit.edu	37	chr8	22415581	22415581	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcactagggaaagatttttgTggcttgaaattgggagggtg	15	3	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22415581	A	A	22415581	1	1	69	0	1	0	0	0	0	0	0	0	15043	1711	59	5		5	SORBS3	8	22415581	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	4597539	22415581	123948441	263	77606											
PEBP4	157310	broad.mit.edu	37	chr8	22662357	22662357	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctcttccatgctgcccCgtgaccaccctgctgcagcc	7	19	2	1	rs140831296	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22662357	T	T	22662357	1	4	69	0	1	0	0	0	0	0	0	0	11808	667	23	4		4	PEBP4	8	22662357	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	246776	22662357	123701665	264	77607											
PEBP4	157310	broad.mit.edu	37	chr8	22679497	22679498	+	Intron	INS	-	A	A													acagagcaagacctcgtctcINSaaaaaaaaaaaaaaagaggc					rs113380878		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22679498	A	A	22679497	6	5	69	0	1	1	1	0	0	0	0	0	11808	841	29	0		0	PEBP4	8	22679497	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	17140	22679497	123684525	265	77608											
ADAM7	8756	broad.mit.edu	37	chr8	24326255	24326255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtgttaactatacttcAactgaattttccctaacttt	4	8	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24326255	T	T	24326255	1	4	69	0	1	0	0	0	0	0	0	0	251	145	5	5		5	ADAM7	8	24326255	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	1646758	24326255	122037767	266	77609											
ADRA1A	148	broad.mit.edu	37	chr8	26620544	26620544	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatttctattccagttagtCaaaggaaaaggaaaaataag	7	5	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26620544	G	G	26620544	1	3	69	0	1	0	0	0	0	0	0	0	334	841	29	4		4	ADRA1A	8	26620544	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2294289	26620544	119743478	267	77610											
ADRA1A	148	broad.mit.edu	37	chr8	26641508	26641508	+	Intron	DEL	A	-	-													ctgaatgaacacagggacacAatggggggaacaacatacac					rs72405356		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26641508	-	-	26641508	6	5	69	0	1	1	0	1	0	0	0	0	334	145	5	0		0	ADRA1A	8	26641508	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	20964	26641508	119722514	268	77611											
TEX15	56154	broad.mit.edu	37	chr8	30705531	30705531	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcttttgtgacaggctctCaaaacttggagtaatttgcc	9	8	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30705531	G	G	30705531	3	3	69	1	0	0	0	0	1	0	0	0	15901	835	29	4	7382	4	TEX15	8	30705531	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	4064023	30705531	115658491	269	77612											
NRG1	3084	broad.mit.edu	37	chr8	32011082	32011082	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctgaaatccacttgatgAtagaaaattagtctatggcc	7	9	1	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32011082	G	G	32011082	1	3	69	0	1	0	0	0	0	0	0	0	10742	348	12	5		5	NRG1	8	32011082	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	1305551	32011082	114352940	270	77613											
LSM1	27257	broad.mit.edu	37	chr8	38027379	38027379	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaatccctcgaggaatatCaccgtattttttgcccacat	5	11	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38027379	G	G	38027379	3	3	69	1	0	0	0	0	1	0	0	0	9137	826	29	4	237	4	LSM1	8	38027379	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	6016297	38027379	108336643	271	77614											
TOX	9760	broad.mit.edu	37	chr8	59988579	59988579	+	Intron	DEL	G	-	-													catctcaaaaaaaaaaaaaaGggggtcaggaagggcctaca					rs112859401		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59988579	-	-	59988579	6	5	69	0	1	1	0	1	0	0	0	0	16501	1015	35	0		0	TOX	8	59988579	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	21961200	59988579	86375443	272	77615											
VCPIP1	80124	broad.mit.edu	37	chr8	67577170	67577170	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtccttgaacatctccaactCtttgggcgtgagcaccatct	8	13	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67577170	G	G	67577170	3	3	69	1	0	0	0	0	1	0	0	0	17268	913	32	4	1656	4	VCPIP1	8	67577170	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	7588591	67577170	78786852	273	77616											
TRPA1	8989	broad.mit.edu	37	chr8	72942274	72942274	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcatgtaaggtctgtcTtagtccattcagactgctgt	9	8	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72942274	G	G	72942274	1	3	69	0	1	0	0	0	0	0	0	0	16702	1624	56	5		5	TRPA1	8	72942274	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	5365104	72942274	73421748	274	77617											
KCNB2	9312	broad.mit.edu	37	chr8	73579109	73579110	+	Intron	INS	-	T	T													atttcttcaattcttatctgINStttttgttgcttttattttt					rs143218885	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73579110	T	T	73579109	6	5	69	0	1	1	1	0	0	0	0	0	8083	1392	48	0		0	KCNB2	8	73579109	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	636835	73579109	72784913	275	77618											
ZFHX4	79776	broad.mit.edu	37	chr8	77775484	77775484	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccttcatcctctctgtcAggacagcagaccgagcaaca	7	16	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77775484	G	G	77775484	2	3	69	1	0	0	0	0	0	0	0	1	17761	175	7	5		5	ZFHX4	8	77775484	Silent	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4196375	77775484	68588538	276	77619											
CNBD1	168975	broad.mit.edu	37	chr8	88218362	88218362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacctggttgaaaggcagCacaggtaatagactaatgtg	12	6	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88218362	A	A	88218362	3	1	69	1	0	0	0	0	1	0	0	0	3623	709	25	3	591	3	CNBD1	8	88218362	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	10442878	88218362	58145660	277	77620											
NIPAL2	79815	broad.mit.edu	37	chr8	99296647	99296648	+	Intron	DEL	CA	-	-													ttctctctctctctctctctCacacacacacacacacacac					rs67700958		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99296648	-	-	99296647	6	5	69	0	1	1	0	1	0	0	0	0	10520	841	29	0		0	NIPAL2	8	99296647	Intron	DEL	CA	TCGA-17-Z040-01A-01W-0746-08	11078285	99296647	47067375	278	77621											
UBR5	51366	broad.mit.edu	37	chr8	103297719	103297719	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaatagtggaatgggAaacttttcagtggtttcata	9	3	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103297719	C	C	103297719	1	2	69	0	1	0	0	0	0	0	0	0	17031	261	9	5		5	UBR5	8	103297719	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4001072	103297719	43066303	279	77622											
RIMS2	9699	broad.mit.edu	37	chr8	104536573	104536586	+	Intron	DEL	CATTTGAAATGAAG	-	-													ctcatgggatagtgctgataCatttgaaatgaagcatttga							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104536586	-	-	104536573	6	5	69	0	1	1	0	1	0	0	0	0	13479	493	17	0		0	RIMS2	8	104536573	Intron	DEL	CATTTGAAATGAAG	TCGA-17-Z040-01A-01W-0746-08	1238854	104536573	41827449	280	77623											
RIMS2	9699	broad.mit.edu	37	chr8	105022213	105022216	+	Intron	DEL	GATA	-	-													cattgtgaaagatatggatgGatagatggatggatggatgg					rs113548968		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105022216	-	-	105022213	6	5	69	0	1	1	0	1	0	0	0	0	13479	1189	41	0		0	RIMS2	8	105022213	Intron	DEL	GATA	TCGA-17-Z040-01A-01W-0746-08	485640	105022213	41341809	281	77624											
CSMD3	114788	broad.mit.edu	37	chr8	113243835	113243835	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaatccttgaaatacataAgtagctccatcaggctcagc	6	10	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113243835	C	C	113243835	2	2	69	1	0	0	0	0	0	0	0	1	3980	59	3	5		5	CSMD3	8	113243835	Silent	SNP	A	TCGA-17-Z040-01A-01W-0746-08	8221622	113243835	33120187	282	77625											
CSMD3	114788	broad.mit.edu	37	chr8	113516209	113516209	+	Intron	DEL	G	-	-													tttggttctatgctaaaactGaaaaaaaaaaggaaagaaca					rs111461827		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113516209	-	-	113516209	6	5	69	0	1	1	0	1	0	0	0	0	3980	1305	45	0		0	CSMD3	8	113516209	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	272374	113516209	32847813	283	77626											
CSMD3	114788	broad.mit.edu	37	chr8	114235990	114235991	+	Intron	DEL	TA	-	-													tgtgtgtgtttatgtgtgtgTatgtgtgtgtgtgtgtgtgt					rs5894132		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114235991	-	-	114235990	6	5	69	0	1	1	0	1	0	0	0	0	3980	1653	57	0		0	CSMD3	8	114235990	Intron	DEL	TA	TCGA-17-Z040-01A-01W-0746-08	719781	114235990	32128032	284	77627											
FER1L6	654463	broad.mit.edu	37	chr8	125083737	125083737	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttcaatgggttgcgttttGtggttccagggctccttctg	12	8	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125083737	A	A	125083737	1	1	69	0	1	0	0	0	0	0	0	0	5872	1392	48	4		4	FER1L6	8	125083737	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	10847747	125083737	21280285	285	77628											
ZNF572	137209	broad.mit.edu	37	chr8	125989598	125989598	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagttctgaatatgaggAaagtttgggtcagaactgca	12	4	2	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125989598	G	G	125989598	3	3	69	1	0	0	0	0	1	0	0	0	18131	246	9	5	1094	5	ZNF572	8	125989598	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	905861	125989598	20374424	286	77629											
ASAP1	50807	broad.mit.edu	37	chr8	131104252	131104252	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctttgtttgggggcccatGaggtagtgggctgggagggt	20	6	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131104252	A	A	131104252	3	1	69	1	0	0	0	0	1	0	0	0	1014	1290	45	4	874	4	ASAP1	8	131104252	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	5114654	131104252	15259770	287	77630											
NDRG1	10397	broad.mit.edu	37	chr8	134268931	134268931	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggtaaagagagagctcGtagctccagggatcccccag	14	10	0	2	rs145676204	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134268931	A	A	134268931	1	1	69	0	1	0	0	0	0	0	0	0	10346	1160	40	4		4	NDRG1	8	134268931	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3164679	134268931	12095091	288	77631											
COL22A1	169044	broad.mit.edu	37	chr8	139606336	139606336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccccatggggccggcCcggcctggaagcccatcttt	13	17	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139606336	A	A	139606336	2	1	69	1	0	0	0	0	0	0	0	1	3713	610	22	2		2	COL22A1	8	139606336	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5337405	139606336	6757686	289	77632											
COL22A1	169044	broad.mit.edu	37	chr8	139818070	139818073	+	Intron	DEL	TTTT	-	-													tatgtgtgatggtgtgtgtgTttttgatggtgtgtgtgtat							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139818073	-	-	139818070	6	5	69	0	1	1	0	1	0	0	0	0	3713	1740	60	0		0	COL22A1	8	139818070	Intron	DEL	TTTT	TCGA-17-Z040-01A-01W-0746-08	211734	139818070	6545952	290	77633											
TRAPPC9	83696	broad.mit.edu	37	chr8	141347009	141347010	+	Intron	INS	-	GTAA	GTAA													ggcgattaacaggatatgggINSgtaagacaatttaaggatga					rs148454702	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTAA	141347010	GTAA	GTAA	141347009	6	5	69	0	1	1	1	0	0	0	0	0	16589	1247	43	0		0	TRAPPC9	8	141347009	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1528939	141347009	5017013	291	77634											
PTK2	5747	broad.mit.edu	37	chr8	141856744	141856744	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaatttcctggtccacttGatcagctatctctaacatat	5	11	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141856744	C	C	141856744	3	2	69	1	0	0	0	0	1	0	0	0	12868	1299	45	4	2782	4	PTK2	8	141856744	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	509735	141856744	4507278	292	77635											
FLJ43860	389690	broad.mit.edu	37	chr8	142469191	142469191	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcatgtctaagtcagagtCtcctaaagagcccgaacagc	9	11	4	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142469191	T	T	142469191	1	4	69	0	1	0	0	0	0	0	0	0	5987	928	32	4		4	FLJ43860	8	142469191	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	612447	142469191	3894831	293	77636											
CYP11B2	1585	broad.mit.edu	37	chr8	143998597	143998597	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacatcctccggcagcatCacacacaccatgcgtggtcc	7	18	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143998597	A	A	143998597	2	1	69	1	0	0	0	0	0	0	0	1	4179	813	29	3		3	CYP11B2	8	143998597	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1529406	143998597	2365425	294	77637											
SH3GL2	6456	broad.mit.edu	37	chr9	17786356	17786356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacattgcctactctgaaaGcttgttctctcttcaccttc	4	14	5	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17786356	T	T	17786356	1	4	69	0	1	0	0	0	0	0	0	0	14364	986	34	3		3	SH3GL2	9	17786356	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08		17786356	123427075	295	77638											
DENND4C	55667	broad.mit.edu	37	chr9	19350853	19350853	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagcagcagtagtggagatGtaggaaaactgcattatcca	12	6	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19350853	A	A	19350853	3	1	69	1	0	0	0	0	1	0	0	0	4475	1377	48	4	3690	4	DENND4C	9	19350853	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1564497	19350853	121862578	296	77639											
B4GALT1	2683	broad.mit.edu	37	chr9	33135908	33135909	+	Intron	DEL	TA	-	-													agtgtgtgtgtgtgtgtgtgTatgtgtgtgtgtgtgtgtgt					rs34931533		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33135909	-	-	33135908	6	5	69	0	1	1	0	1	0	0	0	0	1275	1653	57	0		0	B4GALT1	9	33135908	Intron	DEL	TA	TCGA-17-Z040-01A-01W-0746-08	13785055	33135908	108077523	297	77640											
VPS13A	23230	broad.mit.edu	37	chr9	79890727	79890728	+	Intron	INS	-	T	T													ggtcactccccgccccccccINSttttttttttaaataagatt					rs7041795		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79890728	T	T	79890727	6	5	69	0	1	1	1	0	0	0	0	0	17316	696	24	0		0	VPS13A	9	79890727	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	46754819	79890727	61322704	298	77641											
ROR2	4920	broad.mit.edu	37	chr9	94457907	94457914	+	Intron	DEL	GTGTGAGT	-	-													gtgtgtgtggtgtgtgtgtgGtgtgagtgtgtgtgtgtgtg					rs28627308		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94457914	-	-	94457907	6	5	69	0	1	1	0	1	0	0	0	0	13638	1276	44	0		0	ROR2	9	94457907	Intron	DEL	GTGTGAGT	TCGA-17-Z040-01A-01W-0746-08	14567180	94457907	46755524	299	77642											
IKBKAP	8518	broad.mit.edu	37	chr9	111665947	111665947	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccatccaccgctgcagatGaactgacaaaaaaaaggaga	8	12	0	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111665947	A	A	111665947	3	1	69	1	0	0	0	0	1	0	0	0	7680	1294	45	4	2444	4	IKBKAP	9	111665947	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	17208040	111665947	29547484	300	77643											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112581971	112581972	+	Intron	INS	-	TG	TG													cgtaaataaaggcctaattaINStgtgtgtgtgtgtatgtgtg					rs144647153	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	112581972	TG	TG	112581971	6	5	69	0	1	1	1	0	0	0	0	0	11504	464	16	0		0	PALM2-AKAP2	9	112581971	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	916024	112581971	28631460	301	77644											
SNX30	401548	broad.mit.edu	37	chr9	115620036	115620039	+	Intron	DEL	GCAT	-	-													catggaaggagctcagtaacGcatgcatgcatgcatccatc					rs144243927		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115620039	-	-	115620036	6	5	69	0	1	1	0	1	0	0	0	0	15014	1102	38	0		0	SNX30	9	115620036	Intron	DEL	GCAT	TCGA-17-Z040-01A-01W-0746-08	3038065	115620036	25593395	302	77645											
ASTN2	23245	broad.mit.edu	37	chr9	119367335	119367336	+	Intron	DEL	AC	-	-													aaaagaagagagagagagagAcagagagccaccaagggaag					rs7874884	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119367336	-	-	119367335	6	5	69	0	1	1	0	1	0	0	0	0	1069	290	10	0		0	ASTN2	9	119367335	Intron	DEL	AC	TCGA-17-Z040-01A-01W-0746-08	3747299	119367335	21846096	303	77646											
ASTN2	23245	broad.mit.edu	37	chr9	119909741	119909744	+	Intron	DEL	CACC	-	-													cacacacacacacacacacaCacccccgttatccaccgttc					rs58379572		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119909744	-	-	119909741	6	5	69	0	1	1	0	1	0	0	0	0	1069	493	17	0		0	ASTN2	9	119909741	Intron	DEL	CACC	TCGA-17-Z040-01A-01W-0746-08	542406	119909741	21303690	304	77647											
DENND1A	57706	broad.mit.edu	37	chr9	126531831	126531831	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacaaaacttggtcaaagtCtgtagaacttcctgtggaga	9	7	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126531831	A	A	126531831	3	1	69	1	0	0	0	0	1	0	0	0	4466	912	32	3	3068	3	DENND1A	9	126531831	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	6622090	126531831	14681600	305	77648											
SPTAN1	6709	broad.mit.edu	37	chr9	131374230	131374230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagacactaaatggattatAgaagactttaggctgaatta	8	4	0	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131374230	G	G	131374230	1	3	69	0	1	0	0	0	0	0	0	0	15235	435	15	5		5	SPTAN1	9	131374230	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4842399	131374230	9839201	306	77649											
SH3GLB2	56904	broad.mit.edu	37	chr9	131777205	131777205	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaaacagagttgaagcGtgaggaagaaggtcaggctc	15	5	1	5	rs146144084	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131777205	A	A	131777205	1	1	69	0	1	0	0	0	0	0	0	0	14367	1160	40	4		4	SH3GLB2	9	131777205	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	402975	131777205	9436226	307	77650											
UBAC1	10422	broad.mit.edu	37	chr9	138830180	138830180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagctcctccggagagggCttccggtcccccagcagcca	11	18	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138830180	A	A	138830180	3	1	69	1	0	0	0	0	1	0	0	0	16960	796	28	3	235	3	UBAC1	9	138830180	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	7052975	138830180	2383251	308	77651											
MAN1B1	11253	broad.mit.edu	37	chr9	139997282	139997285	+	Intron	DEL	ACAC	-	-													gcgtgcaggtcggtggtgttAcacacattcacactgttgca					rs71835567		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139997285	-	-	139997282	6	5	69	0	1	1	0	1	0	0	0	0	9304	406	14	0		0	MAN1B1	9	139997282	Intron	DEL	ACAC	TCGA-17-Z040-01A-01W-0746-08	1167102	139997282	1216149	309	77652											
CAMK1D	57118	broad.mit.edu	37	chr10	12823535	12823535	+	Intron	DEL	T	-	-													atttaaacagcagtcccagcTcagatgagaatggtaattac					rs3837320		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12823535	-	-	12823535	6	5	69	0	1	1	0	1	0	0	0	0	2623	1566	54	0		0	CAMK1D	10	12823535	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08		12823535	122711212	310	77653											
FRMD4A	55691	broad.mit.edu	37	chr10	13712593	13712594	+	Intron	DEL	AC	-	-													gggcgtgtctgcttcctagaAcacacacacacgcacataca							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13712594	-	-	13712593	6	5	69	0	1	1	0	1	0	0	0	0	6111	58	2	0		0	FRMD4A	10	13712593	Intron	DEL	AC	TCGA-17-Z040-01A-01W-0746-08	889058	13712593	121822154	311	77654											
FRMD4A	55691	broad.mit.edu	37	chr10	14494456	14494456	+	Intron	DEL	C	-	-													gtggggatgcttaatgggtaCaaaaaaaaaatagaatcaat					rs34064874		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14494456	-	-	14494456	6	5	69	0	1	1	0	1	0	0	0	0	6111	493	17	0		0	FRMD4A	10	14494456	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	781863	14494456	121040291	312	77655											
APBB1IP	54518	broad.mit.edu	37	chr10	26824974	26824974	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctttatctttcgtgtgtGtcttatgtcgtcggaatctc	10	8	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26824974	A	A	26824974	1	1	69	0	1	0	0	0	0	0	0	0	762	1392	48	4		4	APBB1IP	10	26824974	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	12330518	26824974	108709773	313	77656											
MAP3K8	1326	broad.mit.edu	37	chr10	30748179	30748179	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctaagagagctggtttgttGatagatccacaagcaagcac	11	8	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30748179	A	A	30748179	1	1	69	0	1	0	0	0	0	0	0	0	9348	1305	45	4		4	MAP3K8	10	30748179	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3923205	30748179	104786568	314	77657											
C10orf68	79741	broad.mit.edu	37	chr10	32992009	32992009	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgttagctggttatttgctCgttagttgatgcagtttctt	10	5	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32992009	T	T	32992009	1	4	69	0	1	0	0	0	0	0	0	0	1624	899	31	4		4	C10orf68	10	32992009	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2243830	32992009	102542738	315	77658											
MARCH8	220972	broad.mit.edu	37	chr10	45953916	45953916	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catacactttacactgaacaTacataaaaagaagtcctccg	4	11	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45953916	C	C	45953916	3	2	69	1	0	0	0	0	1	0	0	0	9399	1406	49	5	232	5	MARCH8	10	45953916	Missense_Mutation	SNP	T	TCGA-17-Z040-01A-01W-0746-08	12961907	45953916	89580831	316	77659											
ANXA8	653145	broad.mit.edu	37	chr10	47059861	47059861	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacataccccacatgatataTcacataaacacacacacact	1	15	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47059861	G	G	47059861	1	3	69	0	1	0	0	0	0	0	0	0	724	1450	50	5		5	ANXA8	10	47059861	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	1105945	47059861	88474886	317	77660											
PCDH15	65217	broad.mit.edu	37	chr10	56457445	56457446	+	Intron	INS	-	AGGGAGGAAGGG	AGGGAGGAAGGG													gggggaaggggaagggaggaINSagggaggaagggaggaaggg					rs138038040	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGGGAGGAAGGG	56457446	AGGGAGGAAGGG	AGGGAGGAAGGG	56457445	6	5	69	0	1	1	1	0	0	0	0	0	11605	261	9	0		0	PCDH15	10	56457445	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	9397584	56457445	79077302	318	77661											
JMJD1C	221037	broad.mit.edu	37	chr10	64973556	64973556	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaagtaaatgagggtgatGaacagcatggtgtggaccac	16	5	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64973556	A	A	64973556	3	1	69	1	0	0	0	0	1	0	0	0	8020	1290	45	4	5327	4	JMJD1C	10	64973556	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	8516111	64973556	70561191	319	77662											
SIRT1	23411	broad.mit.edu	37	chr10	69651417	69651417	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcattgtttagtaaagtgaAtgctgctactgtggcggagt	12	5	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69651417	G	G	69651417	1	3	69	0	1	0	0	0	0	0	0	0	14450	116	4	5		5	SIRT1	10	69651417	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4677861	69651417	65883330	320	77663											
CDH23	64072	broad.mit.edu	37	chr10	73162502	73162503	+	Intron	INS	-	CA	CA													tgtgtgtgtgtgtgtgtgtgINScacgcgcgcgcgcgcacatg					rs150376431	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	73162503	CA	CA	73162502	6	5	69	0	1	1	1	0	0	0	0	0	3138	1334	46	0		0	CDH23	10	73162502	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	3511085	73162502	62372245	321	77664											
RNLS	55328	broad.mit.edu	37	chr10	89894308	89894309	+	Intron	INS	-	T	T													catcaccatcaccatcataaINStatgaccacctcaccaccac					rs74916537	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89894309	T	T	89894308	6	5	69	0	1	1	1	0	0	0	0	0	13616	116	4	0		0	RNLS	10	89894308	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	16731806	89894308	45640439	322	77665											
C10orf129	142827	broad.mit.edu	37	chr10	96970635	96970635	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggactaaagctaagaaagGagtttcttactcaagactgc	10	7	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96970635	C	C	96970635	1	2	69	0	1	0	0	0	0	0	0	0	1604	1189	41	4		4	C10orf129	10	96970635	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	7076327	96970635	38564112	323	77666											
ZFYVE27	118813	broad.mit.edu	37	chr10	99508143	99508143	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgacccctcctctcccGccaccaccctataggaattt	6	17	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99508143	A	A	99508143	1	1	69	0	1	0	0	0	0	0	0	0	17795	1102	38	4		4	ZFYVE27	10	99508143	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2537508	99508143	36026604	324	77667											
COL17A1	1308	broad.mit.edu	37	chr10	105832790	105832790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcaaaagctacccttcCcctcccgatagagccggtgg	9	15	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105832790	A	A	105832790	1	1	69	0	1	0	0	0	0	0	0	0	3706	638	22	2		2	COL17A1	10	105832790	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	6324647	105832790	29701957	325	77668											
TDRD1	56165	broad.mit.edu	37	chr10	115985847	115985847	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcagttgttctggggacatCagacactgatgtggaagtgc	14	7	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115985847	G	G	115985847	4	3	69	1	0	0	0	0	0	1	0	0	15852	838	29	4	3129	4	TDRD1	10	115985847	Nonsense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	10153057	115985847	19548900	326	77669											
GFRA1	2674	broad.mit.edu	37	chr10	117823906	117823906	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catattgtatttttttaatgCagctatgatgtttctgttaa	6	4	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117823906	A	A	117823906	1	1	69	0	1	0	0	0	0	0	0	0	6411	725	25	3		3	GFRA1	10	117823906	3'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1838059	117823906	17710841	327	77670											
EMX2	2018	broad.mit.edu	37	chr10	119303022	119303022	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcgcacccgcccaaccccGccgtgccagtgcacccggtg	10	21	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119303022	A	A	119303022	3	1	69	1	0	0	0	0	1	0	0	0	5150	1087	38	4	246	4	EMX2	10	119303022	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1479116	119303022	16231725	328	77671											
ADAM12	8038	broad.mit.edu	37	chr10	127759768	127759768	+	Intron	DEL	T	-	-													tcaaactcaaagctaaacacTtttttttattgtttttggcc					rs55918728		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127759768	-	-	127759768	6	5	69	0	1	1	0	1	0	0	0	0	236	1624	56	0		0	ADAM12	10	127759768	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	8456746	127759768	7774979	329	77672											
PAOX	196743	broad.mit.edu	37	chr10	135202325	135202359	+	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	-	-													ggagagctgggctggacactGtcatcccggggctctctttc					rs144417516	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135202359	-	-	135202325	6	5	69	0	1	1	0	1	0	0	0	0	11517	1392	48	0		0	PAOX	10	135202325	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	TCGA-17-Z040-01A-01W-0746-08	7442557	135202325	332422	330	77673											
OR52K1	390036	broad.mit.edu	37	chr11	4510300	4510300	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatccaggctgatgcagcccTccatgaacccatgtacctct	7	15	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4510300	G	G	4510300	3	3	69	1	0	0	0	0	1	0	0	0	11217	1551	54	5	172	5	OR52K1	11	4510300	Missense_Mutation	SNP	T	TCGA-17-Z040-01A-01W-0746-08		4510300	130496216	331	77674											
HBG2	3048	broad.mit.edu	37	chr11	5559122	5559123	+	Intron	INS	-	GG	GG													cttcattggttgtatttctaINSggtgtgtgtgtgtgtgtgtg					rs150877031	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	5559123	GG	GG	5559122	6	5	69	0	1	1	1	0	0	0	0	0	7049	435	15	0		0	HBG2	11	5559122	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1048822	5559122	129447394	332	77675											
OR6A2	8590	broad.mit.edu	37	chr11	6816142	6816142	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctgagagtgcctttggCcgagcatagatgaagatact	12	7	0	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6816142	A	A	6816142	2	1	69	1	0	0	0	0	0	0	0	1	11280	726	26	3		3	OR6A2	11	6816142	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1257020	6816142	128190374	333	77676											
TEAD1	7003	broad.mit.edu	37	chr11	12886261	12886261	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatatacaggtcttagcaaGaaagaaagttcgagaaattc	8	6	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12886261	A	A	12886261	1	1	69	0	1	0	0	0	0	0	0	0	15860	957	33	4		4	TEAD1	11	12886261	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	6070119	12886261	122120255	334	77677											
SOX6	55553	broad.mit.edu	37	chr11	16371303	16371303	+	Intron	SNP	A	G	G													aaggaaggaaggaaggaaggAagggaaggaagggaaagcaa							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16371303	G	G	16371303	1	3	69	0	1	0	0	0	0	0	0	0	15069	261	9	5		5	SOX6	11	16371303	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	3485042	16371303	118635213	335	77678	355	2									
SOX6	55553	broad.mit.edu	37	chr11	16371305	16371305	+	Intron	SNP	G	A	A													ggaaggaaggaaggaaggaaGggaaggaagggaaagcaagc					rs145904383	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16371305	A	A	16371305	1	1	69	0	1	0	0	0	0	0	0	0	15069	1015	35	4		4	SOX6	11	16371305	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2	16371305	118635211	336	77679	355	2									
TPH1	7166	broad.mit.edu	37	chr11	18047940	18047941	+	Intron	INS	-	A	A													ttatttaatcctcgcacaccINSaaaaaaaaaaaaaaaaaaaa					rs66864134		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18047941	A	A	18047940	6	5	69	0	1	1	1	0	0	0	0	0	16525	609	21	0		0	TPH1	11	18047940	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1676635	18047940	116958576	337	77680											
TMEM86A	144110	broad.mit.edu	37	chr11	18722635	18722635	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccttctggcccatggcctGggattcctgctggcccaccc	10	17	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18722635	A	A	18722635	2	1	69	1	0	0	0	0	0	0	0	1	16331	1335	47	4		4	TMEM86A	11	18722635	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	674695	18722635	116283881	338	77681											
PTPN5	84867	broad.mit.edu	37	chr11	18763946	18763946	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctcgatcttctcctccatCcactctgagtaggtgaagga	8	13	3	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18763946	T	T	18763946	4	4	69	1	0	0	0	0	0	1	0	0	12899	856	30	4	1145	4	PTPN5	11	18763946	Nonsense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	41311	18763946	116242570	339	77682											
NAT10	55226	broad.mit.edu	37	chr11	34162954	34162955	+	Intron	INS	-	TC	TC													ttgctgcatctcatcacacaINStcacacacacacacacacac					rs141705432		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	34162955	TC	TC	34162954	6	5	69	0	1	1	1	0	0	0	0	0	10268	232	8	0		0	NAT10	11	34162954	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	15399008	34162954	100843562	340	77683											
ARHGAP1	392	broad.mit.edu	37	chr11	46702019	46702019	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagacctggctggtgaggaGgcaggcccggcactcaccgt	17	12	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46702019	A	A	46702019	1	1	69	0	1	0	0	0	0	0	0	0	863	1015	35	4		4	ARHGAP1	11	46702019	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	12539065	46702019	88304497	341	77684											
PTPRJ	5795	broad.mit.edu	37	chr11	48180646	48180647	+	Intron	INS	-	GG	GG													gtgtgcgtgtgtgtgtatgtINSggggtgtgtgtgtgtgtgtg					rs145240834	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	48180647	GG	GG	48180646	6	5	69	0	1	1	1	0	0	0	0	0	12912	1711	59	0		0	PTPRJ	11	48180646	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1478627	48180646	86825870	342	77685											
OR5D18	219438	broad.mit.edu	37	chr11	55587675	55587675	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactactctccctttcttgCtctgatacttacatcaacca	2	15	5	1	rs141670558	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587675	T	T	55587675	2	4	69	1	0	0	0	0	0	0	0	1	11251	805	28	4		4	OR5D18	11	55587675	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	7407029	55587675	79418841	343	77686											
BBS1	582	broad.mit.edu	37	chr11	66291184	66291184	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctccacagacgctggctgTtccctgccaggggaagaagc	12	15	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66291184	G	G	66291184	1	3	69	0	1	0	0	0	0	0	0	0	1340	1740	60	5		5	BBS1	11	66291184	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	10703509	66291184	68715332	344	77687											
ALG8	79053	broad.mit.edu	37	chr11	77833913	77833913	+	Intron	DEL	A	-	-													aatgagaatgcgcaagggttAaagacattcccaagggactc					rs34360246		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77833913	-	-	77833913	6	5	69	0	1	1	0	1	0	0	0	0	523	377	13	0		0	ALG8	11	77833913	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	11542729	77833913	57172603	345	77688											
ME3	10873	broad.mit.edu	37	chr11	86245975	86245976	+	Intron	INS	-	C	C													gtagttttaaaatggagagtINSttgggccctactcctgacac					rs149727562	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86245976	C	C	86245975	6	5	69	0	1	1	1	0	0	0	0	0	9512	1740	60	0		0	ME3	11	86245975	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	8412062	86245975	48760541	346	77689											
HMBS	3145	broad.mit.edu	37	chr11	118958929	118958929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgttgaggaacactagaaAcagaggggactgtgacctgg	16	6	0	4			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118958929	G	G	118958929	1	3	69	0	1	0	0	0	0	0	0	0	7286	58	2	5		5	HMBS	11	118958929	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	32712954	118958929	16047587	347	77690											
NTM	50863	broad.mit.edu	37	chr11	131355947	131355947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacacaatttaaataccaaGcagaggaaccgccatttact	5	10	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131355947	T	T	131355947	1	4	69	0	1	0	0	0	0	0	0	0	10794	986	34	3		3	NTM	11	131355947	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	12397018	131355947	3650569	348	77691											
DCP1B	196513	broad.mit.edu	37	chr12	2064553	2064553	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgggtcaaagttctttaaGaattctagagacacactgaa	8	7	4	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2064553	A	A	2064553	1	1	69	0	1	0	0	0	0	0	0	0	4332	957	33	4		4	DCP1B	12	2064553	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08		2064553	131787342	349	77692											
CACNA1C	775	broad.mit.edu	37	chr12	2648865	2648865	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcagggtttaaggacttaAggagggtttcataaagatgc	14	4	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2648865	G	G	2648865	1	3	69	0	1	0	0	0	0	0	0	0	2566	87	3	5		5	CACNA1C	12	2648865	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	584312	2648865	131203030	350	77693											
ANO2	57101	broad.mit.edu	37	chr12	5750123	5750123	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcactattcacaacagcaAagacttggaaccaacccaaa	5	13	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5750123	G	G	5750123	1	3	69	0	1	0	0	0	0	0	0	0	697	29	1	5		5	ANO2	12	5750123	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	3101258	5750123	128101772	351	77694											
LPCAT3	10162	broad.mit.edu	37	chr12	7090771	7090771	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacctgatctttccctccGtcaaagtagtcaacagccaa	5	14	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7090771	A	A	7090771	2	1	69	1	0	0	0	0	0	0	0	1	8999	1136	40	4		4	LPCAT3	12	7090771	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1340648	7090771	126761124	352	77695											
TMTC1	83857	broad.mit.edu	37	chr12	29736521	29736521	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccatgctggaaaacagggTggaaggaacgggattacttt	14	7	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29736521	A	A	29736521	1	1	69	0	1	0	0	0	0	0	0	0	16383	1711	59	5		5	TMTC1	12	29736521	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	22645750	29736521	104115374	353	77696											
DNM1L	10059	broad.mit.edu	37	chr12	32860244	32860244	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgttgcctttttgaattcCtaaagataaaaagtagtttc	6	5	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32860244	T	T	32860244	1	4	69	0	1	0	0	0	0	0	0	0	4711	696	24	4		4	DNM1L	12	32860244	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3123723	32860244	100991651	354	77697											
DNM1L	10059	broad.mit.edu	37	chr12	32860353	32860353	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaccaaaaataaggtaatCacacatgcatataatgaaga	5	8	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32860353	T	T	32860353	1	4	69	0	1	0	0	0	0	0	0	0	4711	841	29	4		4	DNM1L	12	32860353	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	109	32860353	100991542	355	77698											
SYT10	341359	broad.mit.edu	37	chr12	33579267	33579267	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcagtctcaaaaacttcAgtaggagcacttgaaatgct	7	9	4	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33579267	C	C	33579267	2	2	69	1	0	0	0	0	0	0	0	1	15585	175	7	5		5	SYT10	12	33579267	Silent	SNP	A	TCGA-17-Z040-01A-01W-0746-08	718914	33579267	100272628	356	77699											
CPNE8	144402	broad.mit.edu	37	chr12	39226863	39226863	+	Intron	DEL	T	-	-													aactgttggtttttaagataTttttggctacaccaggagca					rs138057197		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39226863	-	-	39226863	6	5	69	0	1	1	0	1	0	0	0	0	3850	1508	52	0		0	CPNE8	12	39226863	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	5647596	39226863	94625032	357	77700											
PDZRN4	29951	broad.mit.edu	37	chr12	41967451	41967451	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttagggccaaagagcagcGccgtcgccgtgagttcatga	15	10	1	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41967451	A	A	41967451	3	1	69	1	0	0	0	0	1	0	0	0	11804	1087	38	4	2981	4	PDZRN4	12	41967451	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2740588	41967451	91884444	358	77701											
SLC38A4	55089	broad.mit.edu	37	chr12	47182210	47182210	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaacacagaatgtgctgatCaaggcttggaaaatttcagt	9	6	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47182210	T	T	47182210	1	4	69	0	1	0	0	0	0	0	0	0	14720	841	29	4		4	SLC38A4	12	47182210	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5214759	47182210	86669685	359	77702											
RPAP3	79657	broad.mit.edu	37	chr12	48080316	48080317	+	Intron	INS	-	ACACAT	ACACAT													taccacaggtacataaacacINSacacatacacatacacacac							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACACAT	48080317	ACACAT	ACACAT	48080316	6	5	69	0	1	1	1	0	0	0	0	0	13654	493	17	0		0	RPAP3	12	48080316	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	898106	48080316	85771579	360	77703											
C12orf54	121273	broad.mit.edu	37	chr12	48876635	48876635	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcattcactctacactatttCctgtccttgcctgaactcaa	4	14	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48876635	A	A	48876635	1	1	69	0	1	0	0	0	0	0	0	0	1712	870	30	3		3	C12orf54	12	48876635	5'Flank	SNP	C	TCGA-17-Z040-01A-01W-0746-08	796319	48876635	84975260	361	77704											
MLL2	8085	broad.mit.edu	37	chr12	49420852	49420852	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaccttcttcagggggcCgggcacggggcttgggtcgg	17	12	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49420852	A	A	49420852	3	1	69	1	0	0	0	0	1	0	0	0	9714	652	23	1	1744	1	MLL2	12	49420852	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	544217	49420852	84431043	362	77705											
KRT82	3888	broad.mit.edu	37	chr12	52797715	52797715	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcagccaagaatggaatatCaccaggcagcagagatcctg	11	10	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52797715	A	A	52797715	1	1	69	0	1	0	0	0	0	0	0	0	8567	841	29	3		3	KRT82	12	52797715	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3376863	52797715	81054180	363	77706											
STAT2	6773	broad.mit.edu	37	chr12	56750369	56750369	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgccatttgggctctgcgtCagaaggatgagggttcccaa	14	10	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56750369	A	A	56750369	1	1	69	0	1	0	0	0	0	0	0	0	15383	841	29	3		3	STAT2	12	56750369	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3952654	56750369	77101526	364	77707											
SLC26A10	65012	broad.mit.edu	37	chr12	58016722	58016722	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattgactccaaccaggtggGactctgactgtggaccccaa	10	12	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58016722	T	T	58016722	1	4	69	0	1	0	0	0	0	0	0	0	14629	1189	41	3		3	SLC26A10	12	58016722	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1266353	58016722	75835173	365	77708											
DPY19L2	283417	broad.mit.edu	37	chr12	64020321	64020321	+	Intron	DEL	C	-	-													gtcccactgtaaaaaaaaaaCaaaaaaaacagagaatacaa					rs7310030	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64020321	-	-	64020321	6	5	69	0	1	1	0	1	0	0	0	0	4781	493	17	0		0	DPY19L2	12	64020321	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	6003599	64020321	69831574	366	77709											
CAND1	55832	broad.mit.edu	37	chr12	67692710	67692710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcagctcttcaaggcaGcttttgtttttgtctttaga	8	7	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67692710	A	A	67692710	1	1	69	0	1	0	0	0	0	0	0	0	2641	986	34	4		4	CAND1	12	67692710	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3672389	67692710	66159185	367	77710											
CPM	1368	broad.mit.edu	37	chr12	69279514	69279514	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcatttatacagagctcaAgagaccctaggggaagcttc	10	9	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69279514	G	G	69279514	1	3	69	0	1	0	0	0	0	0	0	0	3840	87	3	5		5	CPM	12	69279514	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	1586804	69279514	64572381	368	77711											
KCNMB4	27345	broad.mit.edu	37	chr12	70778131	70778132	+	Intron	DEL	TG	-	-													ttactttaaaataaatgctcTgtgaaacacaagagactaaa					rs146983123		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70778132	-	-	70778131	6	5	69	0	1	1	0	1	0	0	0	0	8147	1595	55	0		0	KCNMB4	12	70778131	Intron	DEL	TG	TCGA-17-Z040-01A-01W-0746-08	1498617	70778131	63073764	369	77712											
TSPAN8	7103	broad.mit.edu	37	chr12	71732841	71732842	+	Intron	INS	-	C	C													tataaggaacttaaacaaatINSaacaagcaaaaaacaaataa					rs144408075	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71732842	C	C	71732841	6	5	69	0	1	1	1	0	0	0	0	0	16778	1421	49	0		0	TSPAN8	12	71732841	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	954710	71732841	62119054	370	77713											
PLEKHG7	440107	broad.mit.edu	37	chr12	93131207	93131207	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaaactcccgaccgatcaAttagacctgaaaaagcagca	6	13	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93131207	G	G	93131207	1	3	69	0	1	0	0	0	0	0	0	0	12170	116	4	5		5	PLEKHG7	12	93131207	5'UTR	SNP	A	TCGA-17-Z040-01A-01W-0746-08	21398366	93131207	40720688	371	77714											
ANKS1B	56899	broad.mit.edu	37	chr12	100289204	100289205	+	Intron	INS	-	GT	GT													aatccatcaacccccaacccINSgtgtgtgtgtgtgtgtcctt					rs112269284	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	100289205	GT	GT	100289204	6	5	69	0	1	1	1	0	0	0	0	0	689	667	23	0		0	ANKS1B	12	100289204	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	7157997	100289204	33562691	372	77715											
STAB2	55576	broad.mit.edu	37	chr12	104123886	104123886	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcttttttgtttttggttGatttcagagcacggtgtata	9	4	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104123886	T	T	104123886	1	4	69	0	1	0	0	0	0	0	0	0	15356	1305	45	3		3	STAB2	12	104123886	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3834682	104123886	29728009	373	77716											
ACACB	32	broad.mit.edu	37	chr12	109629548	109629548	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccgggtggttggactacCtcattgctgagaaagtgcag	13	9	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109629548	T	T	109629548	3	4	69	1	0	0	0	0	1	0	0	0	107	681	24	4	2325	4	ACACB	12	109629548	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5505662	109629548	24222347	374	77717											
SLC24A6	80024	broad.mit.edu	37	chr12	113748005	113748006	+	Intron	INS	-	C	C													tgggagacatcagcatccctINSccccccccatctcggagaac							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113748006	C	C	113748005	6	5	69	0	1	1	1	0	0	0	0	0	14584	1566	54	0		0	SLC24A6	12	113748005	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	4118457	113748005	20103890	375	77718											
SRRM4	84530	broad.mit.edu	37	chr12	119560050	119560057	+	Intron	DEL	AGGAAGGC	-	-													ggagaaggtgagcgggtgaaAggaaggcaggaaggcaggaa					rs71902941		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119560057	-	-	119560050	6	5	69	0	1	1	0	1	0	0	0	0	15289	87	3	0		0	SRRM4	12	119560050	Intron	DEL	AGGAAGGC	TCGA-17-Z040-01A-01W-0746-08	5812045	119560050	14291845	376	77719											
IL31	386653	broad.mit.edu	37	chr12	122658429	122658429	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgagagggactgtaattcctCgactattttctgtacatcat	8	9	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122658429	G	G	122658429	3	3	69	1	0	0	0	0	1	0	0	0	7760	893	31	4	375	4	IL31	12	122658429	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3098379	122658429	11193466	377	77720											
NCOR2	9612	broad.mit.edu	37	chr12	124907081	124907092	+	In_Frame_Del	DEL	TTCTTGGGATGC	-	-													atgatgcgatcaggccaaagTtcttgggatgctgcatgaac							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124907092	-	-	124907081	7	5	69	1	0	1	0	1	0	0	0	0	10331	1725	60	0	6363	0	NCOR2	12	124907081	In_Frame_Del	DEL	TTCTTGGGATGC	TCGA-17-Z040-01A-01W-0746-08	2248652	124907081	8944814	378	77721											
RIMBP2	23504	broad.mit.edu	37	chr12	130967288	130967288	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctcatcccaatacacccaTtgtgtgtgtacatgtgtcag	7	12	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130967288	C	C	130967288	1	2	69	0	1	0	0	0	0	0	0	0	13472	1508	52	5		5	RIMBP2	12	130967288	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	6060207	130967288	2884607	379	77722											
NUPL1	9818	broad.mit.edu	37	chr13	25883359	25883359	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcttcattgatgattaAattttatttctctttttgtc	4	6	4	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25883359	T	T	25883359	1	4	69	0	1	0	0	0	0	0	0	0	10869	29	1	5		5	NUPL1	13	25883359	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08		25883359	89286519	380	77723											
PDS5B	23047	broad.mit.edu	37	chr13	33315189	33315190	+	Intron	INS	-	T	T													ttacattttaaagtccctggINStttttttttttttctcgttt					rs2320470		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33315190	T	T	33315189	6	5	69	0	1	1	1	0	0	0	0	0	11786	1276	44	0		0	PDS5B	13	33315189	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	7431830	33315189	81854689	381	77724											
STARD13	90627	broad.mit.edu	37	chr13	33755407	33755408	+	Intron	DEL	AT	-	-													tgtctttcactcacacatacAtacacacacacacacacaca					rs144824984		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33755408	-	-	33755407	6	5	69	0	1	1	0	1	0	0	0	0	15374	232	8	0		0	STARD13	13	33755407	Intron	DEL	AT	TCGA-17-Z040-01A-01W-0746-08	440218	33755407	81414471	382	77725											
SLITRK6	84189	broad.mit.edu	37	chr13	86369977	86369978	+	In_Frame_Ins	INS	-	GCA	GCA													aactgcaataagtcacaattINSgcaggcccatttgttgtcct							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GCA	86369978	GCA	GCA	86369977	7	5	69	1	0	1	1	0	0	0	0	0	14861	1812	63	0	1862	0	SLITRK6	13	86369977	In_Frame_Ins	INS	-	TCGA-17-Z040-01A-01W-0746-08	52614570	86369977	28799901	383	77726											
TMTC4	84899	broad.mit.edu	37	chr13	101264493	101264493	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccccacaccgctgtctttGaagcaacttttccaggaaac	8	14	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101264493	A	A	101264493	1	1	69	0	1	0	0	0	0	0	0	0	16386	1305	45	4		4	TMTC4	13	101264493	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	14894516	101264493	13905385	384	77727											
ITGBL1	9358	broad.mit.edu	37	chr13	102220122	102220122	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcttgccagtacccaaCtaactgtgacttgacaaaga	9	10	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102220122	T	T	102220122	3	4	69	1	0	0	0	0	1	0	0	0	7972	565	20	4	399	4	ITGBL1	13	102220122	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	955629	102220122	12949756	385	77728											
NPAS3	64067	broad.mit.edu	37	chr14	33813074	33813075	+	Intron	INS	-	T	T													gacctaggtctgctctggcgINStcctcagtgcattgtctttt					rs143416806	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33813075	T	T	33813074	6	5	69	0	1	1	1	0	0	0	0	0	10659	1160	40	0		0	NPAS3	14	33813074	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08		33813074	73536466	386	77729											
LRFN5	145581	broad.mit.edu	37	chr14	42218410	42218410	+	Intron	DEL	G	-	-													attaaatttccaatacatgaGcgttgagagacgtatgcaaa							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42218410	-	-	42218410	6	5	69	0	1	1	0	1	0	0	0	0	9028	986	34	0		0	LRFN5	14	42218410	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	8405336	42218410	65131130	387	77730											
C14orf37	145407	broad.mit.edu	37	chr14	58727859	58727860	+	Intron	INS	-	T	T													ttcaaggaaagtaatttttcINSttttttttttttttacaaca							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58727860	T	T	58727859	6	5	69	0	1	1	1	0	0	0	0	0	1784	928	32	0		0	C14orf37	14	58727859	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	16509449	58727859	48621681	388	77731											
DACT1	51339	broad.mit.edu	37	chr14	59112172	59112172	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtccacttcatgctgtggcTgtgcagagcccaatgtttct	10	11	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59112172	A	A	59112172	2	1	69	1	0	0	0	0	0	0	0	1	4255	1567	55	5		5	DACT1	14	59112172	Silent	SNP	T	TCGA-17-Z040-01A-01W-0746-08	384313	59112172	48237368	389	77732											
DACT1	51339	broad.mit.edu	37	chr14	59112495	59112495	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagccccgggcggtgtctCacagggcaacagtgtgaacc	14	13	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59112495	T	T	59112495	3	4	69	1	0	0	0	0	1	0	0	0	4255	838	29	4	1168	4	DACT1	14	59112495	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	323	59112495	48237045	390	77733											
SYNE2	23224	broad.mit.edu	37	chr14	64685108	64685108	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtaacttaaaaactggctCattctagggaaagctactat	8	7	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64685108	T	T	64685108	1	4	69	0	1	0	0	0	0	0	0	0	15565	841	29	4		4	SYNE2	14	64685108	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5572613	64685108	42664432	391	77734											
RAD51L1	5890	broad.mit.edu	37	chr14	68568162	68568162	+	Intron	DEL	G	-	-													tagttactcctagatacagtGggggtacaggcattgggtaa							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68568162	-	-	68568162	6	5	69	0	1	1	0	1	0	0	0	0	13097	1363	47	0		0	RAD51L1	14	68568162	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	3883054	68568162	38781378	392	77735											
COX16	51241	broad.mit.edu	37	chr14	70806612	70806614	+	Intron	DEL	CTT	-	-													tacagaccttaaccatcctcCttcttttaacctcattccct					rs34869883		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70806614	-	-	70806612	6	5	69	0	1	1	0	1	0	0	0	0	3797	696	24	0		0	COX16	14	70806612	Intron	DEL	CTT	TCGA-17-Z040-01A-01W-0746-08	2238450	70806612	36542928	393	77736											
HEATR4	399671	broad.mit.edu	37	chr14	73985674	73985674	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtgggtaatgatgggaaGtagccacattcccgttatta	11	6	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73985674	T	T	73985674	1	4	69	0	1	0	0	0	0	0	0	0	7097	1044	36	3		3	HEATR4	14	73985674	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3179062	73985674	33363866	394	77737											
SERPINA12	145264	broad.mit.edu	37	chr14	94960014	94960014	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagacgccactgagagcagCttacacttggacttcacaag	10	12	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94960014	T	T	94960014	1	4	69	0	1	0	0	0	0	0	0	0	14202	812	28	4		4	SERPINA12	14	94960014	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	20974340	94960014	12389526	395	77738											
HHIPL1	84439	broad.mit.edu	37	chr14	100123122	100123123	+	Intron	DEL	AG	-	-													actctgtctgcaaaaagaaaAgaaaagaaagaaagaaagaa					rs72341366		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100123123	-	-	100123122	6	5	69	0	1	1	0	1	0	0	0	0	7160	87	3	0		0	HHIPL1	14	100123122	Intron	DEL	AG	TCGA-17-Z040-01A-01W-0746-08	5163108	100123122	7226418	396	77739											
OR4N4	283694	broad.mit.edu	37	chr15	22333592	22333594	+	Intron	DEL	ATG	-	-													gtagaatttactggccacaaAtgataacaagcattaattga					rs111877525		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22333594	-	-	22333592	6	5	69	0	1	1	0	1	0	0	0	0	11172	116	4	0		0	OR4N4	15	22333592	Intron	DEL	ATG	TCGA-17-Z040-01A-01W-0746-08		22333592	80197800	397	77740											
OR4N4	283694	broad.mit.edu	37	chr15	22352096	22352096	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctacataggatcatgccaTcttctaacagagacactaac	5	11	4	1	rs143554222	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22352096	C	C	22352096	1	2	69	0	1	0	0	0	0	0	0	0	11172	1450	50	5		5	OR4N4	15	22352096	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	18504	22352096	80179296	398	77741											
RYR3	6263	broad.mit.edu	37	chr15	34145914	34145914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaggagttcaaatccaaaGcagctaaaatagatagatct	7	7	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34145914	T	T	34145914	1	4	69	0	1	0	0	0	0	0	0	0	13881	986	34	3		3	RYR3	15	34145914	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	11793818	34145914	68385478	399	77742											
INO80	54617	broad.mit.edu	37	chr15	41371789	41371789	+	Intron	DEL	C	-	-													taccaaaaaaaaaaaaaaaaCaaaaaattgacagtgtcatt							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41371789	-	-	41371789	6	5	69	0	1	1	0	1	0	0	0	0	7816	493	17	0		0	INO80	15	41371789	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	7225875	41371789	61159603	400	77743											
GALK2	2585	broad.mit.edu	37	chr15	49574421	49574421	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattgtaggatattatttccCaactgcttgtaactcaaggc	7	8	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49574421	T	T	49574421	1	4	69	0	1	0	0	0	0	0	0	0	6266	609	21	4		4	GALK2	15	49574421	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	8202632	49574421	52956971	401	77744											
DMXL2	23312	broad.mit.edu	37	chr15	51749698	51749698	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgtgttactgtgaacattCccttttctcttaacacaaat	4	10	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51749698	T	T	51749698	1	4	69	0	1	0	0	0	0	0	0	0	4635	870	30	4		4	DMXL2	15	51749698	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2175277	51749698	50781694	402	77745											
HERC1	8925	broad.mit.edu	37	chr15	63901228	63901228	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagtatatcaacatcaaatCagaagtgagcattattgagg	8	5	3	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63901228	G	G	63901228	1	3	69	0	1	0	0	0	0	0	0	0	7124	841	29	4		4	HERC1	15	63901228	3'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	12151530	63901228	38630164	403	77746											
AKAP13	11214	broad.mit.edu	37	chr15	85933807	85933808	+	Intron	INS	-	A	A													tttgagcaaggcatgacaagINSgttgatttaggctttaaaaa					rs138374485	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85933808	A	A	85933807	6	5	69	0	1	1	1	0	0	0	0	0	449	1015	35	0		0	AKAP13	15	85933807	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	22032579	85933807	16597585	404	77747											
ZNF434	54925	broad.mit.edu	37	chr16	3432780	3432780	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaagtcagggactggctaGatctctccacagcagaagaa	11	10	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3432780	A	A	3432780	1	1	69	0	1	0	0	0	0	0	0	0	18035	957	33	4		4	ZNF434	16	3432780	3'UTR	SNP	G	TCGA-17-Z040-01A-01W-0746-08		3432780	86921973	405	77748											
GRIN2A	2903	broad.mit.edu	37	chr16	9915985	9915985	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaacaaaaactgccctcaActggggcccatctggaccac	7	14	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9915985	C	C	9915985	1	2	69	0	1	0	0	0	0	0	0	0	6845	58	2	5		5	GRIN2A	16	9915985	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	6483205	9915985	80438768	406	77749											
GRIN2A	2903	broad.mit.edu	37	chr16	10168361	10168361	+	Intron	DEL	A	-	-													atcctacaatcaatgaagggAtaaacaagatatgatatggc							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10168361	-	-	10168361	6	5	69	0	1	1	0	1	0	0	0	0	6845	348	12	0		0	GRIN2A	16	10168361	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	252376	10168361	80186392	407	77750											
OTOA	146183	broad.mit.edu	37	chr16	21725621	21725622	+	Intron	INS	-	CTTC	CTTC													tcctttctttcttttcctttINScttccttccttccttccttc					rs34598445		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTTC	21725622	CTTC	CTTC	21725621	6	5	69	0	1	1	1	0	0	0	0	0	11396	1798	62	0		0	OTOA	16	21725621	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	11557260	21725621	68629132	408	77751											
HS3ST4	9951	broad.mit.edu	37	chr16	25869220	25869221	+	Intron	INS	-	CTTC	CTTC													ttctttctttctttttctttINScttccttccttccttccttc					rs72453395		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTTC	25869221	CTTC	CTTC	25869220	6	5	69	0	1	1	1	0	0	0	0	0	7434	1798	62	0		0	HS3ST4	16	25869220	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	4143599	25869220	64485533	409	77752											
HS3ST4	9951	broad.mit.edu	37	chr16	25884642	25884645	+	Intron	DEL	TCCT	-	-													tccatccatccatccatccaTccttccttccttcctttcat					rs56296232	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25884645	-	-	25884642	6	5	69	0	1	1	0	1	0	0	0	0	7434	1450	50	0		0	HS3ST4	16	25884642	Intron	DEL	TCCT	TCGA-17-Z040-01A-01W-0746-08	15422	25884642	64470111	410	77753											
SPNS1	83985	broad.mit.edu	37	chr16	28990692	28990693	+	Intron	INS	-	G	G													ggggactggactgactggctINSgtcccccctttttcccctct					rs139343178	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28990693	G	G	28990692	6	5	69	0	1	1	1	0	0	0	0	0	15192	1595	55	0		0	SPNS1	16	28990692	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	3106050	28990692	61364061	411	77754											
SEZ6L2	26470	broad.mit.edu	37	chr16	29884929	29884930	+	Frame_Shift_Ins	INS	-	G	G													tgtagcaggtgagcatggctINSgccccctcgaggctgtaccc							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29884930	G	G	29884929	7	5	69	1	0	1	1	0	0	0	0	0	14257	1567	55	0	569	0	SEZ6L2	16	29884929	Frame_Shift_Ins	INS	-	TCGA-17-Z040-01A-01W-0746-08	894237	29884929	60469824	412	77755											
ITGAM	3684	broad.mit.edu	37	chr16	31282442	31282442	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttagggaagagcccacaCggggctggaagatacatggc	16	8	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31282442	T	T	31282442	1	4	69	0	1	0	0	0	0	0	0	0	7957	551	19	4		4	ITGAM	16	31282442	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1397513	31282442	59072311	413	77756											
C16orf78	123970	broad.mit.edu	37	chr16	49430501	49430501	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgacatggcttacgaaCgcaagctaaagagcctcatg	10	11	1	2	rs140378939	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49430501	T	T	49430501	3	4	69	1	0	0	0	0	1	0	0	0	1849	536	19	4	576	4	C16orf78	16	49430501	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	18148059	49430501	40924252	414	77757											
CHD9	80205	broad.mit.edu	37	chr16	53190555	53190555	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaacaaaacagaaataAtctcaacccagggcagaatt	5	11	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53190555	G	G	53190555	3	3	69	1	0	0	0	0	1	0	0	0	3363	101	4	5	556	5	CHD9	16	53190555	Missense_Mutation	SNP	A	TCGA-17-Z040-01A-01W-0746-08	3760054	53190555	37164198	415	77758											
NLRC5	84166	broad.mit.edu	37	chr16	57074370	57074370	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactaaggcagttcacataCagtctcccattgagaggctg	9	10	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57074370	T	T	57074370	1	4	69	0	1	0	0	0	0	0	0	0	10565	493	17	4		4	NLRC5	16	57074370	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	3883815	57074370	33280383	416	77759											
FHOD1	29109	broad.mit.edu	37	chr16	67264062	67264062	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatctccccggcctggccCgctgctcactgctactggga	11	17	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67264062	G	G	67264062	3	3	69	1	0	0	0	0	1	0	0	0	5939	652	23	4	385	4	FHOD1	16	67264062	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	10189692	67264062	23090691	417	77760											
CALB2	794	broad.mit.edu	37	chr16	71416027	71416028	+	Intron	INS	-	AAGGAAGGAAGGAAAG	AAGGAAGGAAGGAAAG													gaagggaagaaaggaagaaaINSaaggaaggaaggaaagaagg					rs67540929		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAGGAAGGAAGGAAAG	71416028	AAGGAAGGAAGGAAAG	AAGGAAGGAAGGAAAG	71416027	6	5	69	0	1	1	1	0	0	0	0	0	2600	29	1	0		0	CALB2	16	71416027	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	4151965	71416027	18938726	418	77761											
VAT1L	57687	broad.mit.edu	37	chr16	77953122	77953122	+	Intron	DEL	A	-	-													tctctgcaacctaggtgtccAggggaaaacagagagcccct					rs11288720		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77953122	-	-	77953122	6	5	69	0	1	1	0	1	0	0	0	0	17257	203	7	0		0	VAT1L	16	77953122	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	6537095	77953122	12401631	419	77762											
WWOX	51741	broad.mit.edu	37	chr16	78997973	78997973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaacctctttttcttcccGgtctcaggttatgtctttat	5	10	4	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78997973	T	T	78997973	1	4	69	0	1	0	0	0	0	0	0	0	17541	1131	39	1		1	WWOX	16	78997973	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1044851	78997973	11356780	420	77763											
PRDM7	11105	broad.mit.edu	37	chr16	90124775	90124775	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggatcagaatattgccgctCctgattctgatcccctgggc	10	12	2	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90124775	G	G	90124775	3	3	69	1	0	0	0	0	1	0	0	0	12567	855	30	4	81	4	PRDM7	16	90124775	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	11126802	90124775	229978	421	77764											
DNAH9	1770	broad.mit.edu	37	chr17	11805971	11805971	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatctggcccctcaatccCccaacacaatgcaaatgaca	4	17	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11805971	A	A	11805971	1	1	69	0	1	0	0	0	0	0	0	0	4648	638	22	2		2	DNAH9	17	11805971	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08		11805971	69389239	422	77765											
MPRIP	23164	broad.mit.edu	37	chr17	17083962	17083962	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggatacctgaaatgcaccCgcttcccggcccatgcagga	11	14	0	1	rs151057133	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17083962	T	T	17083962	1	4	69	0	1	0	0	0	0	0	0	0	9837	667	23	4		4	MPRIP	17	17083962	3'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5277991	17083962	64111248	423	77766											
CPD	1362	broad.mit.edu	37	chr17	28776721	28776721	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaactgcttttggctctggcAgaatttctctgcctgaacta	9	10	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28776721	T	T	28776721	2	4	69	1	0	0	0	0	0	0	0	1	3830	175	7	5		5	CPD	17	28776721	Silent	SNP	A	TCGA-17-Z040-01A-01W-0746-08	11692759	28776721	52418489	424	77767											
NF1	4763	broad.mit.edu	37	chr17	29587415	29587415	+	Frame_Shift_Del	DEL	C	-	-													ttgatatagcatctgattgtCctacaagtgatgcagtaaat							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29587415	-	-	29587415	7	5	69	1	0	1	0	1	0	0	0	0	10451	855	30	0	4654	0	NF1	17	29587415	Frame_Shift_Del	DEL	C	TCGA-17-Z040-01A-01W-0746-08	810694	29587415	51607795	425	77768											
TMEM98	26022	broad.mit.edu	37	chr17	31256250	31256251	+	Intron	DEL	CA	-	-													gcacactctgagaaacagctCacacacacagaaacagaaaa							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31256251	-	-	31256250	6	5	69	0	1	1	0	1	0	0	0	0	16348	841	29	0		0	TMEM98	17	31256250	Intron	DEL	CA	TCGA-17-Z040-01A-01W-0746-08	1668835	31256250	49938960	426	77769											
ACCN1	40	broad.mit.edu	37	chr17	31517849	31517850	+	Intron	INS	-	A	A													agactgaccatcccaagggtINScagggaagatgcagagcatt					rs149748137	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31517850	A	A	31517849	6	5	69	0	1	1	1	0	0	0	0	0	128	1682	58	0		0	ACCN1	17	31517849	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	261599	31517849	49677361	427	77770											
ACCN1	40	broad.mit.edu	37	chr17	31952144	31952145	+	Intron	INS	-	TCTG	TCTG													atcaaagacaatgtggcctcINStctgtctatctatctatcta					rs146689643	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCTG	31952145	TCTG	TCTG	31952144	6	5	69	0	1	1	1	0	0	0	0	0	128	928	32	0		0	ACCN1	17	31952144	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	434295	31952144	49243066	428	77771											
C17orf66	256957	broad.mit.edu	37	chr17	34193620	34193620	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacagttaatggcagccccAggggtaaatgtcagggttct	12	9	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34193620	C	C	34193620	1	2	69	0	1	0	0	0	0	0	0	0	1890	203	7	5		5	C17orf66	17	34193620	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	2241476	34193620	47001590	429	77772											
MLLT6	4302	broad.mit.edu	37	chr17	36872744	36872745	+	Frame_Shift_Ins	INS	-	C	C													cttctccctcagctcccgagINSccccccaaggctgacctttt							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36872745	C	C	36872744	7	5	69	1	0	1	1	0	0	0	0	0	9723	962	34	0	1199	0	MLLT6	17	36872744	Frame_Shift_Ins	INS	-	TCGA-17-Z040-01A-01W-0746-08	2679124	36872744	44322466	430	77773											
PSME3	10197	broad.mit.edu	37	chr17	40986625	40986625	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctattctttcctcaaattccCcaatttttttggccctggta	4	12	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40986625	T	T	40986625	1	4	69	0	1	0	0	0	0	0	0	0	12814	638	22	4		4	PSME3	17	40986625	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	4113881	40986625	40208585	431	77774											
G6PC	2538	broad.mit.edu	37	chr17	41061185	41061185	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaggcatctttggacttttGagtactggctttaatttaca	8	7	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41061185	A	A	41061185	1	1	69	0	1	0	0	0	0	0	0	0	6203	1305	45	4		4	G6PC	17	41061185	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	74560	41061185	40134025	432	77775											
ITGA3	3675	broad.mit.edu	37	chr17	48165215	48165215	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctgctgctggggctgatCatcctcctgctgtggaaggt	14	11	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48165215	T	T	48165215	2	4	69	1	0	0	0	0	0	0	0	1	7947	816	29	4		4	ITGA3	17	48165215	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	7104030	48165215	33029995	433	77776											
MSI2	124540	broad.mit.edu	37	chr17	55541352	55541355	+	Intron	DEL	GTGT	-	-													tttggttcagtttaatgaacGtgtgtgtgtgtgtgtgtgtg					rs71750982		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55541355	-	-	55541352	6	5	69	0	1	1	0	1	0	0	0	0	9970	1160	40	0		0	MSI2	17	55541352	Intron	DEL	GTGT	TCGA-17-Z040-01A-01W-0746-08	7376137	55541352	25653858	434	77777											
TANC2	26115	broad.mit.edu	37	chr17	61134449	61134449	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctccagcctcagcatcttGagtagctgggactacaggta	10	12	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61134449	A	A	61134449	1	1	69	0	1	0	0	0	0	0	0	0	15664	1305	45	4		4	TANC2	17	61134449	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	5593097	61134449	20060761	435	77778											
STRADA	92335	broad.mit.edu	37	chr17	61790607	61790607	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattaggctgagcagcattTcagcccaatccttagtgcca	8	11	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61790607	G	G	61790607	1	3	69	0	1	0	0	0	0	0	0	0	15442	1798	62	5		5	STRADA	17	61790607	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	656158	61790607	19404603	436	77779											
SMURF2	64750	broad.mit.edu	37	chr17	62602762	62602763	+	Intron	INS	-	A	A													ttttttgcacagagtactgtINSaaaaaaaaaaaacaaaaaat							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62602763	A	A	62602762	6	5	69	0	1	1	1	0	0	0	0	0	14934	1653	57	0		0	SMURF2	17	62602762	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	812155	62602762	18592448	437	77780											
PITPNC1	26207	broad.mit.edu	37	chr17	65688658	65688658	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctcttataaataactgcTcgtttttctttctgtttttc	3	10	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65688658	C	C	65688658	1	2	69	0	1	0	0	0	0	0	0	0	12044	1566	54	5		5	PITPNC1	17	65688658	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	3085896	65688658	15506552	438	77781											
ABCA5	23461	broad.mit.edu	37	chr17	67294448	67294451	+	Intron	DEL	AGAG	-	-													gggaggggaaagagaaagaaAgagagagagaggaaggaagg					rs72245536		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67294451	-	-	67294448	6	5	69	0	1	1	0	1	0	0	0	0	35	87	3	0		0	ABCA5	17	67294448	Intron	DEL	AGAG	TCGA-17-Z040-01A-01W-0746-08	1605790	67294448	13900762	439	77782											
TMEM104	54868	broad.mit.edu	37	chr17	72832070	72832070	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctctcgtttcccagctttCgccgtcatgattgtgctggc	9	14	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72832070	T	T	72832070	2	4	69	1	0	0	0	0	0	0	0	1	16141	883	31	4		4	TMEM104	17	72832070	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	5537622	72832070	8363140	440	77783											
KIAA0195	9772	broad.mit.edu	37	chr17	73494453	73494453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcctgcctcgcctcgaggCttcctccctccccaccccag	7	23	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73494453	A	A	73494453	1	1	69	0	1	0	0	0	0	0	0	0	8230	812	28	3		3	KIAA0195	17	73494453	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	662383	73494453	7700757	441	77784											
LAMA1	284217	broad.mit.edu	37	chr18	7026049	7026049	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccctcgggaaggctccccGtagaagccgggcaagcactg	14	14	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7026049	A	A	7026049	2	1	69	1	0	0	0	0	0	0	0	1	8677	1140	40	4		4	LAMA1	18	7026049	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08		7026049	71051199	442	77785											
ASXL3	80816	broad.mit.edu	37	chr18	31241861	31241862	+	Intron	INS	-	AA	AA													caataattttaatctgtgatINSaaaaaaaaactaggagaggc					rs146967011	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31241862	AA	AA	31241861	6	5	69	0	1	1	1	0	0	0	0	0	1072	1421	49	0		0	ASXL3	18	31241861	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	24215812	31241861	46835387	443	77786											
MOCOS	55034	broad.mit.edu	37	chr18	33838824	33838824	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaagtgttttggatcttcAccagcaactaccactaccta	5	11	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33838824	C	C	33838824	1	2	69	0	1	0	0	0	0	0	0	0	9783	174	6	5		5	MOCOS	18	33838824	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	2596963	33838824	44238424	444	77787											
DSEL	92126	broad.mit.edu	37	chr18	65180855	65180855	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaccaattataattggaatCtgctatacccacagttcttt	4	9	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65180855	G	G	65180855	3	3	69	1	0	0	0	0	1	0	0	0	4815	913	32	4	2651	4	DSEL	18	65180855	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	31342031	65180855	12896393	445	77788											
STAP2	55620	broad.mit.edu	37	chr19	4333894	4333894	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtagcagccaccttgacCacaccatctacattgtctgc	7	14	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4333894	A	A	4333894	1	1	69	0	1	0	0	0	0	0	0	0	15371	609	21	2		2	STAP2	19	4333894	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08		4333894	54795089	446	77789											
ADAMTS10	81794	broad.mit.edu	37	chr19	8656993	8656994	+	Intron	INS	-	G	G													cgtttgtagcaccactgggtINSggggggagacaggaaggagt					rs11882422	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8656994	G	G	8656993	6	5	69	0	1	1	1	0	0	0	0	0	256	1711	59	0		0	ADAMTS10	19	8656993	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	4323099	8656993	50471990	447	77790											
COL5A3	50509	broad.mit.edu	37	chr19	10108929	10108930	+	Intron	INS	-	AT	AT													acacacacacacacacacacINSacacggagtccaccctcaga					rs146616197	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	10108930	AT	AT	10108929	6	5	69	0	1	1	1	0	0	0	0	0	3730	493	17	0		0	COL5A3	19	10108929	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	1451936	10108929	49020054	448	77791											
EMR2	30817	broad.mit.edu	37	chr19	14857202	14857203	+	Intron	INS	-	C	C													atctctttttttttttttttINScagacagggtcttgctctgt					rs146686953	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14857203	C	C	14857202	6	5	69	0	1	1	1	0	0	0	0	0	5147	1798	62	0		0	EMR2	19	14857202	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	4748273	14857202	44271781	449	77792											
OR7A17	26333	broad.mit.edu	37	chr19	14991932	14991932	+	Frame_Shift_Del	DEL	G	-	-													ggatgttaatgagcatctttGggattgtagtggagatgaaa							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14991932	-	-	14991932	7	5	69	1	0	1	0	1	0	0	0	0	11309	1348	47	0	695	0	OR7A17	19	14991932	Frame_Shift_Del	DEL	G	TCGA-17-Z040-01A-01W-0746-08	134730	14991932	44137051	450	77793											
PGLYRP2	114770	broad.mit.edu	37	chr19	15587253	15587253	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatccaactctgtagcattGaggctccatgcccccagcag	10	14	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15587253	C	C	15587253	2	2	69	1	0	0	0	0	0	0	0	1	11889	1277	45	4		4	PGLYRP2	19	15587253	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	595321	15587253	43541730	451	77794											
OR10H3	26532	broad.mit.edu	37	chr19	15852739	15852739	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgtgatccaccattttctCtgtcatgtgctttccctctt	5	12	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15852739	T	T	15852739	2	4	69	1	0	0	0	0	0	0	0	1	11001	900	32	4		4	OR10H3	19	15852739	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	265486	15852739	43276244	452	77795											
ZNF493	284443	broad.mit.edu	37	chr19	21587910	21587911	+	Intron	INS	-	TG	TG													tgtgtgtgtgtgtgtgtgtgINStttgtgtgtgtttgtttcag					rs71176868		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	21587911	TG	TG	21587910	6	5	69	0	1	1	1	0	0	0	0	0	18071	1392	48	0		0	ZNF493	19	21587910	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	5735171	21587910	37541073	453	77796											
CCDC123	84902	broad.mit.edu	37	chr19	33457534	33457534	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgccatccccagtccccatCaggccagacaagtgcacaca	7	18	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33457534	G	G	33457534	1	3	69	0	1	0	0	0	0	0	0	0	2785	841	29	4		4	CCDC123	19	33457534	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	11869624	33457534	25671449	454	77797											
NFKBID	84807	broad.mit.edu	37	chr19	36381172	36381172	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactttcccctgcagatccCacacatcgtcccctccacgt	4	19	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36381172	T	T	36381172	1	4	69	0	1	0	0	0	0	0	0	0	10474	609	21	4		4	NFKBID	19	36381172	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2923638	36381172	22747811	455	77798											
ZNF780B	163131	broad.mit.edu	37	chr19	40539838	40539838	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttccacattctttacattCatacggttcataccagtatg	4	11	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40539838	T	T	40539838	1	4	69	0	1	0	0	0	0	0	0	0	18282	841	29	4		4	ZNF780B	19	40539838	3'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	4158666	40539838	18589145	456	77799											
LIPE	3991	broad.mit.edu	37	chr19	42910261	42910261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccccagcccgtccctgcaGgagtcagacatccatgcagt	10	16	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42910261	A	A	42910261	1	1	69	0	1	0	0	0	0	0	0	0	8894	1015	35	4		4	LIPE	19	42910261	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2370423	42910261	16218722	457	77800											
PSG1	5669	broad.mit.edu	37	chr19	43357785	43357785	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccaagccctactcagttatCcagggtctttctcagggtca	9	13	4	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43357785	G	G	43357785	1	3	69	0	1	0	0	0	0	0	0	0	12759	870	30	4		4	PSG1	19	43357785	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	447524	43357785	15771198	458	77801											
PSG1	5669	broad.mit.edu	37	chr19	43359589	43359589	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgatctcctgatccactcGcctcagcctcccaaagtgct	6	18	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43359589	A	A	43359589	1	1	69	0	1	0	0	0	0	0	0	0	12759	1102	38	4		4	PSG1	19	43359589	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1804	43359589	15769394	459	77802											
KCNN4	3783	broad.mit.edu	37	chr19	44281477	44281478	+	Intron	DEL	GG	-	-													gtgtgtgtgtgtgtgtgtgtGggtgtgtgtgtgtggtgtct					rs72282703		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44281478	-	-	44281477	6	5	69	0	1	1	0	1	0	0	0	0	8151	1363	47	0		0	KCNN4	19	44281477	Intron	DEL	GG	TCGA-17-Z040-01A-01W-0746-08	921888	44281477	14847506	460	77803											
SYMPK	8189	broad.mit.edu	37	chr19	46355635	46355635	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacttgtctgcttggaatgcGatgatctcctgccaatgtta	10	9	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46355635	A	A	46355635	2	1	69	1	0	0	0	0	0	0	0	1	15558	1048	37	4		4	SYMPK	19	46355635	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2074158	46355635	12773348	461	77804											
ELSPBP1	64100	broad.mit.edu	37	chr19	48519714	48519729	+	Intron	DEL	TTTCTTTCCTTCTTTC	-	-													tccctcccttttctctttctTttctttccttctttctttct					rs112170164	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48519729	-	-	48519714	6	5	69	0	1	1	0	1	0	0	0	0	5125	1856	64	0		0	ELSPBP1	19	48519714	Intron	DEL	TTTCTTTCCTTCTTTC	TCGA-17-Z040-01A-01W-0746-08	2164079	48519714	10609269	462	77805											
CCDC114	93233	broad.mit.edu	37	chr19	48800927	48800927	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacccggggggtcttctcTggggaggggaaggaaaattg	17	6	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48800927	A	A	48800927	5	1	69	1	0	0	0	0	0	0	1	0	2777	1594	55	5	630	5	CCDC114	19	48800927	Splice_Site	SNP	T	TCGA-17-Z040-01A-01W-0746-08	281213	48800927	10328056	463	77806											
TRPM4	54795	broad.mit.edu	37	chr19	49714608	49714608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctctcggcacctttccaGtgtccctgggtcactctctt	7	16	4	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49714608	T	T	49714608	1	4	69	0	1	0	0	0	0	0	0	0	16713	1044	36	3		3	TRPM4	19	49714608	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	913681	49714608	9414375	464	77807											
PRMT1	3276	broad.mit.edu	37	chr19	50191362	50191363	+	Intron	INS	-	C	C													gcatagcctgcctgcacccgINSccccccgccaccacctcctg							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50191363	C	C	50191362	6	5	69	0	1	1	1	0	0	0	0	0	12641	1102	38	0		0	PRMT1	19	50191362	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	476754	50191362	8937621	465	77808											
SHANK1	50944	broad.mit.edu	37	chr19	51166539	51166540	+	Intron	INS	-	AG	AG													atggaagggacaggggacacINSagagagagagagatgaagag					rs138730639	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	51166540	AG	AG	51166539	6	5	69	0	1	1	1	0	0	0	0	0	14377	493	17	0		0	SHANK1	19	51166539	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	975177	51166539	7962444	466	77809											
KLK1	3816	broad.mit.edu	37	chr19	51327601	51327601	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccaaagctactgttcctttCataataaaattttggggtac	6	9	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51327601	G	G	51327601	1	3	69	0	1	0	0	0	0	0	0	0	8468	841	29	4		4	KLK1	19	51327601	5'Flank	SNP	C	TCGA-17-Z040-01A-01W-0746-08	161062	51327601	7801382	467	77810											
DUXA	503835	broad.mit.edu	37	chr19	57671929	57671929	+	Intron	DEL	G	-	-													ctaccaagccctcagcacatGggtacatagtatgggctccg							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57671929	-	-	57671929	6	5	69	0	1	1	0	1	0	0	0	0	4874	1363	47	0		0	DUXA	19	57671929	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	6344328	57671929	1457054	468	77811											
PSMF1	9491	broad.mit.edu	37	chr20	1097421	1097421	+	Intron	DEL	A	-	-													tatgattaatgctttgcaggAaaaaaaaaaagccagagagg					rs75062426		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1097421	-	-	1097421	6	5	69	0	1	1	0	1	0	0	0	0	12816	261	9	0		0	PSMF1	20	1097421	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08		1097421	61928099	469	77812											
MAVS	57506	broad.mit.edu	37	chr20	3835496	3835496	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggctggctccttcctTcttcctcttgctgtgtcttg	10	14	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3835496	C	C	3835496	1	2	69	0	1	0	0	0	0	0	0	0	9430	1798	62	5		5	MAVS	20	3835496	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	2738075	3835496	59190024	470	77813											
PLCB1	23236	broad.mit.edu	37	chr20	8832360	8832360	+	Intron	DEL	T	-	-													atctccatttctttttttggTttttttttttttcatttttt					rs11479187		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8832360	-	-	8832360	6	5	69	0	1	1	0	1	0	0	0	0	12122	1740	60	0		0	PLCB1	20	8832360	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	4996864	8832360	54193160	471	77814											
C20orf103	24141	broad.mit.edu	37	chr20	9495457	9495457	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggattccctctctggcggCctctgcagcagcacagccgg	13	15	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9495457	A	A	9495457	1	1	69	0	1	0	0	0	0	0	0	0	2097	754	26	3		3	C20orf103	20	9495457	5'UTR	SNP	C	TCGA-17-Z040-01A-01W-0746-08	663097	9495457	53530063	472	77815											
PAK7	57144	broad.mit.edu	37	chr20	9600927	9600927	+	Intron	DEL	G	-	-													aatgttgtgtcctcagcactGggcttggtatttggctggca					rs151130831		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9600927	-	-	9600927	6	5	69	0	1	1	0	1	0	0	0	0	11499	1363	47	0		0	PAK7	20	9600927	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	105470	9600927	53424593	473	77816											
C20orf94	128710	broad.mit.edu	37	chr20	10468721	10468722	+	Intron	DEL	TC	-	-													atgcattgggagacctgggtTctctccccaggtcccaacag					rs66559463		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10468722	-	-	10468721	6	5	69	0	1	1	0	1	0	0	0	0	2143	1798	62	0		0	C20orf94	20	10468721	Intron	DEL	TC	TCGA-17-Z040-01A-01W-0746-08	867794	10468721	52556799	474	77817											
SLC24A3	57419	broad.mit.edu	37	chr20	19335259	19335268	+	Intron	DEL	TGTGTGTGTA	-	-													tgtgtgtgtgtgtgtgtgtgTgtgtgtgtatgtgtgtatga					rs148697764	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19335268	-	-	19335259	6	5	69	0	1	1	0	1	0	0	0	0	14581	1711	59	0		0	SLC24A3	20	19335259	Intron	DEL	TGTGTGTGTA	TCGA-17-Z040-01A-01W-0746-08	8866538	19335259	43690261	475	77818											
SLC24A3	57419	broad.mit.edu	37	chr20	19677646	19677662	+	Intron	DEL	GGAGGGAGAAGAGAAAG	-	-													ggagggagggaaggaaggcaGgagggagaagagaaagggag					rs33986665		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19677662	-	-	19677646	6	5	69	0	1	1	0	1	0	0	0	0	14581	1015	35	0		0	SLC24A3	20	19677646	Intron	DEL	GGAGGGAGAAGAGAAAG	TCGA-17-Z040-01A-01W-0746-08	342387	19677646	43347874	476	77819											
NAPB	63908	broad.mit.edu	37	chr20	23365764	23365764	+	Intron	DEL	C	-	-													agactctgtctcaaaacaaaCaaacaaaaaaaaacaagatc					rs34658304		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23365764	-	-	23365764	6	5	69	0	1	1	0	1	0	0	0	0	10256	493	17	0		0	NAPB	20	23365764	Intron	DEL	C	TCGA-17-Z040-01A-01W-0746-08	3688118	23365764	39659756	477	77820											
DEFB124	245937	broad.mit.edu	37	chr20	30053333	30053333	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatattcatgcttggggacCggtggaggtttcaatgcata	12	7	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30053333	T	T	30053333	2	4	69	1	0	0	0	0	0	0	0	1	4449	639	23	4		4	DEFB124	20	30053333	Silent	SNP	C	TCGA-17-Z040-01A-01W-0746-08	6687569	30053333	32972187	478	77821											
HM13	81502	broad.mit.edu	37	chr20	30142485	30142485	+	Intron	DEL	A	-	-													acagtgcgagactccgtctcAaaaaaaaaaaaaaatgtaaa							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30142485	-	-	30142485	6	5	69	0	1	1	0	1	0	0	0	0	7284	145	5	0		0	HM13	20	30142485	Intron	DEL	A	TCGA-17-Z040-01A-01W-0746-08	89152	30142485	32883035	479	77822											
HCK	3055	broad.mit.edu	37	chr20	30686798	30686798	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccgactctgctctgttcaAccctgcaggggccaagttcc	9	17	3	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30686798	G	G	30686798	1	3	69	0	1	0	0	0	0	0	0	0	7060	58	2	5		5	HCK	20	30686798	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	544313	30686798	32338722	480	77823											
CBFA2T2	9139	broad.mit.edu	37	chr20	32161960	32161960	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcacaatcctgactgtaccTgtgatgttgcattcatcttt	7	10	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32161960	G	G	32161960	1	3	69	0	1	0	0	0	0	0	0	0	2723	1595	55	5		5	CBFA2T2	20	32161960	5'UTR	SNP	T	TCGA-17-Z040-01A-01W-0746-08	1475162	32161960	30863560	481	77824											
EYA2	2139	broad.mit.edu	37	chr20	45731538	45731539	+	Intron	INS	-	ATAT	ATAT													actctgtttttttccagctgINSgtattaggcaaatgcaaggt					rs139181262	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATAT	45731539	ATAT	ATAT	45731538	6	5	69	0	1	1	1	0	0	0	0	0	5372	1363	47	0		0	EYA2	20	45731538	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	13569578	45731538	17293982	482	77825											
PTGIS	5740	broad.mit.edu	37	chr20	48130814	48130814	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgggagagtggtcgtctgcGagacaggctgctccgcttgc	17	10	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48130814	T	T	48130814	4	4	69	1	0	0	0	0	0	1	0	0	12858	1059	37	3	544	3	PTGIS	20	48130814	Nonsense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2399276	48130814	14894706	483	77826											
TSHZ2	128553	broad.mit.edu	37	chr20	52032362	52032363	+	Intron	DEL	CA	-	-													cacacacacacacacacacgCacacacaggcatgacagtgt					rs73625474		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52032363	-	-	52032362	6	5	69	0	1	1	0	1	0	0	0	0	16749	725	25	0		0	TSHZ2	20	52032362	Intron	DEL	CA	TCGA-17-Z040-01A-01W-0746-08	3901548	52032362	10993158	484	77827											
TPTE	7179	broad.mit.edu	37	chr21	10972723	10972723	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcctgagccaccgcaccCgaccttccaactacttttca	6	18	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10972723	T	T	10972723	1	4	69	0	1	0	0	0	0	0	0	0	16554	667	23	4		4	TPTE	21	10972723	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08		10972723	37157172	485	77828											
BAGE2	85319	broad.mit.edu	37	chr21	11026758	11026758	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccgattccacttttcaGctttgacctgcctcggccac	7	16	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11026758	T	T	11026758	1	4	69	0	1	0	0	0	0	0	0	0	1297	986	34	3		3	BAGE2	21	11026758	3'UTR	SNP	G	TCGA-17-Z040-01A-01W-0746-08	54035	11026758	37103137	486	77829											
BAGE2	85319	broad.mit.edu	37	chr21	11037063	11037063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaagtgaaggctgtttGctagataactaaaaccaaga	8	7	2	3	rs79808856		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11037063	T	T	11037063	1	4	69	0	1	0	0	0	0	0	0	0	1297	1334	46	3		3	BAGE2	21	11037063	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	10305	11037063	37092832	487	77830											
BAGE2	85319	broad.mit.edu	37	chr21	11046041	11046041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgattaaatgaaatgtaaGcataaattaacatacttcag	5	5	2	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11046041	A	A	11046041	1	1	69	0	1	0	0	0	0	0	0	0	1297	986	34	4		4	BAGE2	21	11046041	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	8978	11046041	37083854	488	77831											
BAGE2	85319	broad.mit.edu	37	chr21	11057675	11057675	+	Intron	DEL	T	-	-													tgaaaaggtgctagcagagaTttctatcacacctatcaggg					rs113590499		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11057675	-	-	11057675	6	5	69	0	1	1	0	1	0	0	0	0	1297	1508	52	0		0	BAGE2	21	11057675	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	11634	11057675	37072220	489	77832											
BAGE2	85319	broad.mit.edu	37	chr21	11061894	11061894	+	Intron	DEL	G	-	-													accaaaattctaaaggaaaaGttatgtatatatctaataat					rs56157850		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11061894	-	-	11061894	6	5	69	0	1	1	0	1	0	0	0	0	1297	1044	36	0		0	BAGE2	21	11061894	Intron	DEL	G	TCGA-17-Z040-01A-01W-0746-08	4219	11061894	37068001	490	77833											
BAGE2	85319	broad.mit.edu	37	chr21	11064649	11064649	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacactgttgctatctttGaagataaaaagagccaggag	9	6	1	3	rs76731709		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11064649	C	C	11064649	1	2	69	0	1	0	0	0	0	0	0	0	1297	1305	45	4		4	BAGE2	21	11064649	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2755	11064649	37065246	491	77834											
BAGE2	85319	broad.mit.edu	37	chr21	11078574	11078574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaatctcatgataaaacTtgcacagattaggagttgtt	8	7	1	2	rs76805569		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11078574	A	A	11078574	1	1	69	0	1	0	0	0	0	0	0	0	1297	1624	56	5		5	BAGE2	21	11078574	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	13925	11078574	37051321	492	77835											
CYYR1	116159	broad.mit.edu	37	chr21	27945074	27945074	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaggcagaagcgtctgcAaaggtccttctgcaaaggtc	12	9	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27945074	C	C	27945074	1	2	69	0	1	0	0	0	0	0	0	0	4244	145	5	5		5	CYYR1	21	27945074	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	16866500	27945074	20184821	493	77836											
C21orf59	56683	broad.mit.edu	37	chr21	33979852	33979852	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtggaggttgtggtgagccGagatcgcaccattgcactcc	15	10	0	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33979852	A	A	33979852	1	1	69	0	1	0	0	0	0	0	0	0	2152	1073	37	4		4	C21orf59	21	33979852	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	6034778	33979852	14150043	494	77837											
DYRK1A	1859	broad.mit.edu	37	chr21	38759001	38759002	+	Intron	INS	-	G	G													aactcacaattggaattccaINSgggacaggctcaggggctaa					rs141216442	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38759002	G	G	38759001	6	5	69	0	1	1	1	0	0	0	0	0	4894	203	7	0		0	DYRK1A	21	38759001	Intron	INS	-	TCGA-17-Z040-01A-01W-0746-08	4779149	38759001	9370894	495	77838											
DSCAM	1826	broad.mit.edu	37	chr21	41453251	41453251	+	Intron	DEL	T	-	-													attttaataaaaataaagcaTtttttttccctgcacactac					rs11366586		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41453251	-	-	41453251	6	5	69	0	1	1	0	1	0	0	0	0	4808	1508	52	0		0	DSCAM	21	41453251	Intron	DEL	T	TCGA-17-Z040-01A-01W-0746-08	2694250	41453251	6676644	496	77839											
ZNF295	49854	broad.mit.edu	37	chr21	43414130	43414130	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatcacacagctgtcctttGagacgctcctcattcagggc	8	14	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43414130	C	C	43414130	2	2	69	1	0	0	0	0	0	0	0	1	17953	1277	45	4		4	ZNF295	21	43414130	Silent	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1960879	43414130	4715765	497	77840											
BCL2L13	23786	broad.mit.edu	37	chr22	18166100	18166100	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaaggtctgtttattcTtatttttctagttaataagc	6	5	4	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18166100	G	G	18166100	1	3	69	0	1	0	0	0	0	0	0	0	1376	1624	56	5		5	BCL2L13	22	18166100	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08		18166100	33138466	498	77841											
CLTCL1	8218	broad.mit.edu	37	chr22	19222082	19222082	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcatagctgccctgtgCaaagagggtattgaattttc	10	8	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19222082	T	T	19222082	3	4	69	1	0	0	0	0	1	0	0	0	3599	710	25	4	3909	4	CLTCL1	22	19222082	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1055982	19222082	32082484	499	77842											
ZNF74	7625	broad.mit.edu	37	chr22	20748987	20748987	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgtagtcagtatgtctgtgGatttgcacttgaggatattg	12	4	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20748987	C	C	20748987	1	2	69	0	1	0	0	0	0	0	0	0	18256	1189	41	4		4	ZNF74	22	20748987	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	1526905	20748987	30555579	500	77843											
MYO18B	84700	broad.mit.edu	37	chr22	26185048	26185072	+	Intron	DEL	TCTTCCTCCTCCTTCTTCTTCCTCC	-	-													ctcctcctcctcctccttctTcttcctcctccttcttcttc					rs7511385		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26185072	-	-	26185048	6	5	69	0	1	1	0	1	0	0	0	0	10160	1798	62	0		0	MYO18B	22	26185048	Intron	DEL	TCTTCCTCCTCCTTCTTCTTCCTCC	TCGA-17-Z040-01A-01W-0746-08	5436061	26185048	25119518	501	77844											
MYO18B	84700	broad.mit.edu	37	chr22	26242334	26242334	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgagtcatgtgcctacatCatctctaacctccccagcaa	6	15	3	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26242334	G	G	26242334	1	3	69	0	1	0	0	0	0	0	0	0	10160	841	29	4		4	MYO18B	22	26242334	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	57286	26242334	25062232	502	77845											
LARGE	9215	broad.mit.edu	37	chr22	34109964	34109968	+	Intron	DEL	TAACG	-	-													aaaaagtaaataacgtaacaTaacgtaacataacataacat					rs71686476		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34109968	-	-	34109964	6	5	69	0	1	1	0	1	0	0	0	0	8699	1421	49	0		0	LARGE	22	34109964	Intron	DEL	TAACG	TCGA-17-Z040-01A-01W-0746-08	7867630	34109964	17194602	503	77846											
CRLF2	64109	broad.mit.edu	37	chrX	1325485	1325485	+	RNA	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcataggcctcatcacCgttgaatctgtggtttaaaa	9	9	4	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1325485	T	T	1325485	1	4	69	0	1	0	0	0	0	0	0	0	3919	652	23	4		4	CRLF2	23	1325485	RNA	SNP	C	TCGA-17-Z040-01A-01W-0746-08		1325485	153945075	504	77847											
MXRA5	25878	broad.mit.edu	37	chrX	3229296	3229296	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtagtctccttcctccctCatccccacttcgttaaagta	5	15	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3229296	A	A	3229296	3	1	69	1	0	0	0	0	1	0	0	0	10097	826	29	3	1542	3	MXRA5	23	3229296	Missense_Mutation	SNP	C	TCGA-17-Z040-01A-01W-0746-08	1903811	3229296	152041264	505	77848											
FRMPD4	9758	broad.mit.edu	37	chrX	12725070	12725070	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttgctttctctTggaagccacagcagctcatt	6	9	2	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12725070	G	G	12725070	1	3	69	0	1	0	0	0	0	0	0	0	6119	1827	63	5		5	FRMPD4	23	12725070	Intron	SNP	T	TCGA-17-Z040-01A-01W-0746-08	9495774	12725070	142545490	506	77849											
ASB11	140456	broad.mit.edu	37	chrX	15315613	15315613	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccttacccacagtgggtaAgccatctggaaggtaaacta	10	11	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15315613	G	G	15315613	1	3	69	0	1	0	0	0	0	0	0	0	1019	87	3	5		5	ASB11	23	15315613	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	2590543	15315613	139954947	507	77850											
MAP3K15	389840	broad.mit.edu	37	chrX	19431260	19431260	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacActcccccacccccacacctc	0	25	0	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19431260	T	T	19431260	1	4	69	0	1	0	0	0	0	0	0	0	9341	174	6	5		5	MAP3K15	23	19431260	Intron	SNP	A	TCGA-17-Z040-01A-01W-0746-08	4115647	19431260	135839300	508	77851											
PTCHD1	139411	broad.mit.edu	37	chrX	23412262	23412263	+	Frame_Shift_Del	DEL	TC	-	-													gtgtgtagaaatggtagataTcgatagtacccgtgtggttg							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23412263	-	-	23412262	7	5	69	1	0	1	0	1	0	0	0	0	12838	1435	50	0	2637	0	PTCHD1	23	23412262	Frame_Shift_Del	DEL	TC	TCGA-17-Z040-01A-01W-0746-08	3981002	23412262	131858298	509	77852											
PAGE2B	389860	broad.mit.edu	37	chrX	55102946	55102946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgattcgatgcacatatGcatttgtgtatttatattat	8	4	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55102946	T	T	55102946	1	4	69	0	1	0	0	0	0	0	0	0	11485	1334	46	3		3	PAGE2B	23	55102946	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	31690684	55102946	100167614	510	77853											
FAAH2	158584	broad.mit.edu	37	chrX	57361950	57361950	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaagagcagtattgctgCcagcatgtcccacctccagc	8	14	0	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57361950	T	T	57361950	1	4	69	0	1	0	0	0	0	0	0	0	5400	754	26	4		4	FAAH2	23	57361950	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	2259004	57361950	97908610	511	77854											
MSN	4478	broad.mit.edu	37	chrX	64951850	64951865	+	Intron	DEL	TATCTCAGATCTCTTT	-	-													tatgagcagaatgacaggtaTatctcagatctcttttagtt							TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64951865	-	-	64951850	6	5	69	0	1	1	0	1	0	0	0	0	9979	1421	49	0		0	MSN	23	64951850	Intron	DEL	TATCTCAGATCTCTTT	TCGA-17-Z040-01A-01W-0746-08	7589900	64951850	90318710	512	77855											
EDA	1896	broad.mit.edu	37	chrX	68840629	68840629	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtctttctccataatgcctGacacagtgctagttacagtt	7	10	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68840629	C	C	68840629	1	2	69	0	1	0	0	0	0	0	0	0	4943	1305	45	4		4	EDA	23	68840629	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	3888779	68840629	86429931	513	77856											
EDA	1896	broad.mit.edu	37	chrX	68840709	68840709	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactttggaggtgtttatgtGaaacaaagacattttctctt	9	5	1	2			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68840709	A	A	68840709	1	1	69	0	1	0	0	0	0	0	0	0	4943	1305	45	4		4	EDA	23	68840709	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	80	68840709	86429851	514	77857											
HDAC8	55869	broad.mit.edu	37	chrX	71708768	71708768	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatccacttattactggctaGtgttactgccatacctttca	5	11	1	0			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71708768	A	A	71708768	1	1	69	0	1	0	0	0	0	0	0	0	7080	1044	36	4		4	HDAC8	23	71708768	Intron	SNP	G	TCGA-17-Z040-01A-01W-0746-08	2868059	71708768	83561792	515	77858											
TEX13A	56157	broad.mit.edu	37	chrX	104463623	104463623	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcgagatatacatgcttcGgttctattttgcatttctgc	7	9	2	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104463623	A	A	104463623	1	1	69	0	1	0	0	0	0	0	0	0	15898	1131	39	4		4	TEX13A	23	104463623	3'UTR	SNP	G	TCGA-17-Z040-01A-01W-0746-08	32754855	104463623	50806937	516	77859											
UPF3B	65109	broad.mit.edu	37	chrX	118975572	118975572	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgagaccaagaaggcaaatCcttaaagagtaatggtggaa	12	5	0	3			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118975572	A	A	118975572	1	1	69	0	1	0	0	0	0	0	0	0	17132	870	30	3		3	UPF3B	23	118975572	Intron	SNP	C	TCGA-17-Z040-01A-01W-0746-08	14511949	118975572	36294988	517	77860											
DDX26B	203522	broad.mit.edu	37	chrX	134680353	134680353	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctattttaattaccatcacaGatggaaacaagttaacaagt	5	7	1	1			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134680353	C	C	134680353	3	2	69	1	0	0	0	0	1	0	0	0	4386	942	33	4	402	4	DDX26B	23	134680353	Missense_Mutation	SNP	G	TCGA-17-Z040-01A-01W-0746-08	15704781	134680353	20590207	518	77861											
C1orf159	54991	broad.mit.edu	37	chr1	1035022	1035022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattggagagagagaggttAaaatctctgactatgattgt	12	3	1	4	rs141736713	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1035022	G	G	1035022	1	3	70	0	1	0	0	0	0	0	0	0	2028	377	13	5		5	C1orf159	1	1035022	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08		1035022	248215599	1	77862											
NBPF1	55672	broad.mit.edu	37	chr1	16891791	16891791	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcatggttgtgaggacttTagacactgaaattagagtga	12	4	1	5	rs3868820		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16891791	C	C	16891791	1	2	70	0	1	0	0	0	0	0	0	0	10286	1769	61	5		5	NBPF1	1	16891791	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	15856769	16891791	232358830	2	77863											
NBPF1	55672	broad.mit.edu	37	chr1	16908347	16908347	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagttcgcatttcaaacctCattctttctcttaggagagg	7	10	4	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16908347	T	T	16908347	1	4	70	0	1	0	0	0	0	0	0	0	10286	841	29	4		4	NBPF1	1	16908347	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	16556	16908347	232342274	3	77864											
CAPZB	832	broad.mit.edu	37	chr1	19814717	19814718	+	5'Flank	INS	-	T	T													aatcaaggatgatgctaagaINSttttttttttcatatttaaa					rs143256092	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19814718	T	T	19814717	6	5	70	0	1	1	1	0	0	0	0	0	2669	348	12	0		0	CAPZB	1	19814717	5'Flank	INS	-	TCGA-17-Z041-01A-01W-0746-08	2906370	19814717	229435904	4	77865											
COL16A1	1307	broad.mit.edu	37	chr1	32162567	32162567	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcctgcccacccacctcGctgttttgaggctcctccag	8	18	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32162567	A	A	32162567	2	1	70	1	0	0	0	0	0	0	0	1	3705	1078	38	4		4	COL16A1	1	32162567	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	12347850	32162567	217088054	5	77866											
KIAA0467	23334	broad.mit.edu	37	chr1	43881758	43881758	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcactgcagttactaccctCgaactctagtgcaggtcagt	10	12	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43881758	A	A	43881758	4	1	70	1	0	0	0	0	0	1	0	0	8248	899	31	3		3	KIAA0467	1	43881758	Nonsense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	11719191	43881758	205368863	6	77867											
PTCH2	8643	broad.mit.edu	37	chr1	45298037	45298038	+	Intron	INS	-	G	G													cagagcaaacagagaaagctINSgggggggaaagggcctaggc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45298038	G	G	45298037	6	5	70	0	1	1	1	0	0	0	0	0	12837	1595	55	0		0	PTCH2	1	45298037	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1416279	45298037	203952584	7	77868											
NASP	4678	broad.mit.edu	37	chr1	46067805	46067805	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtaaataagtgtgttagCcaggccttgccagagtagtc	12	7	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46067805	G	G	46067805	1	3	70	0	1	0	0	0	0	0	0	0	10266	754	26	4		4	NASP	1	46067805	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	769768	46067805	203182816	8	77869											
GLIS1	148979	broad.mit.edu	37	chr1	54001460	54001460	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacgagctatctgaaaagaaGacttaagcccatagctctgt	8	10	2	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54001460	C	C	54001460	1	2	70	0	1	0	0	0	0	0	0	0	6509	957	33	4		4	GLIS1	1	54001460	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7933655	54001460	195249161	9	77870											
PDE4B	5142	broad.mit.edu	37	chr1	66736464	66736464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attagagggaattataagaaAaaagaaaaaggaaagaaaag	10	0	0	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66736464	G	G	66736464	1	3	70	0	1	0	0	0	0	0	0	0	11734	29	1	5		5	PDE4B	1	66736464	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	12735004	66736464	182514157	10	77871											
PDE4B	5142	broad.mit.edu	37	chr1	66736492	66736492	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaagaaaagagataaaAaagaatggaaaaagaaaaag	10	0	0	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66736492	T	T	66736492	1	4	70	0	1	0	0	0	0	0	0	0	11734	29	1	5		5	PDE4B	1	66736492	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	28	66736492	182514129	11	77872											
LRRC7	57554	broad.mit.edu	37	chr1	70161227	70161227	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagagagctttgcatgactAaaatggagccaagcactaat	9	8	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70161227	C	C	70161227	1	2	70	0	1	0	0	0	0	0	0	0	9107	377	13	5		5	LRRC7	1	70161227	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	3424735	70161227	179089394	12	77873											
SLC44A5	204962	broad.mit.edu	37	chr1	75757373	75757373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgatgggtactgaggaCagaaaggagaccagtgtggt	17	4	0	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75757373	A	A	75757373	1	1	70	0	1	0	0	0	0	0	0	0	14753	493	17	3		3	SLC44A5	1	75757373	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5596146	75757373	173493248	13	77874											
SLC44A5	204962	broad.mit.edu	37	chr1	76019569	76019571	+	Intron	DEL	AGG	-	-													gtaaggaatccttgtggagcAggaggaggaggaggaggagg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76019571	-	-	76019569	6	5	70	0	1	1	0	1	0	0	0	0	14753	203	7	0		0	SLC44A5	1	76019569	Intron	DEL	AGG	TCGA-17-Z041-01A-01W-0746-08	262196	76019569	173231052	14	77875											
GBP4	115361	broad.mit.edu	37	chr1	89649805	89649805	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatataaaaatcactcatcAtcactaatcactacagaaat	2	10	5	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89649805	T	T	89649805	1	4	70	0	1	0	0	0	0	0	0	0	6338	232	8	5		5	GBP4	1	89649805	3'UTR	SNP	A	TCGA-17-Z041-01A-01W-0746-08	13630236	89649805	159600816	15	77876											
GBP5	115362	broad.mit.edu	37	chr1	89729400	89729400	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagcaattctccacaaTaggtagaactagggatacct	7	12	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89729400	A	A	89729400	1	1	70	0	1	0	0	0	0	0	0	0	6339	1421	49	5		5	GBP5	1	89729400	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	79595	89729400	159521221	16	77877											
BCAR3	8412	broad.mit.edu	37	chr1	94242991	94242991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcttcctcctcCtcctcttcctcctcctcctc	0	25	2	0	rs111445690		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94242991	A	A	94242991	1	1	70	0	1	0	0	0	0	0	0	0	1354	696	24	2		2	BCAR3	1	94242991	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	4513591	94242991	155007630	17	77878											
ARHGAP29	9411	broad.mit.edu	37	chr1	94669513	94669513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgttagttctagttgcCtctgccaacttgaccatatt	6	11	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94669513	A	A	94669513	3	1	70	1	0	0	0	0	1	0	0	0	880	680	24	2	3114	2	ARHGAP29	1	94669513	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	426522	94669513	154581108	18	77879											
DPYD	1806	broad.mit.edu	37	chr1	98015413	98015413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgttccagggattcaaaCaactgtttttagtaaactat	6	6	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98015413	A	A	98015413	1	1	70	0	1	0	0	0	0	0	0	0	4785	493	17	3		3	DPYD	1	98015413	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3345900	98015413	151235208	19	77880											
AMY2A	279	broad.mit.edu	37	chr1	104160331	104160331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacattttacttcacagGtaagtattctaagtaaaaga	7	6	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104160331	T	T	104160331	1	4	70	0	1	0	0	0	0	0	0	0	594	1276	44	3		3	AMY2A	1	104160331	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	6144918	104160331	145090290	20	77881											
GSTM3	2947	broad.mit.edu	37	chr1	110280566	110280566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattacatgacaaaacaaacCaaaaaatataagttctgttt	3	6	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110280566	A	A	110280566	1	1	70	0	1	0	0	0	0	0	0	0	6905	609	21	2		2	GSTM3	1	110280566	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	6120235	110280566	138970055	21	77882											
NBPF9	400818	broad.mit.edu	37	chr1	145205769	145205769	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaacttctccaacacaCcaagacattcttccagtctt	2	15	5	1	rs74957786		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145205769	T	T	145205769	1	4	70	0	1	0	0	0	0	0	0	0	10294	522	18	4		4	NBPF9	1	145205769	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	34925203	145205769	104044852	22	77883											
NBPF10	100132406	broad.mit.edu	37	chr1	145300869	145300869	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacagagtcttgttgctaaAgaggaagaaagatcgcaccc	11	9	1	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145300869	G	G	145300869	1	3	70	0	1	0	0	0	0	0	0	0	10287	87	3	5		5	NBPF10	1	145300869	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	95100	145300869	103949752	23	77884											
NBPF10	100132406	broad.mit.edu	37	chr1	145313112	145313113	+	Intron	DEL	CT	-	-													ctcgctgagctcactttctcCtctctctctctctctctctc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145313113	-	-	145313112	6	5	70	0	1	1	0	1	0	0	0	0	10287	696	24	0		0	NBPF10	1	145313112	Intron	DEL	CT	TCGA-17-Z041-01A-01W-0746-08	12243	145313112	103937509	24	77885											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149783693	149783693	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgttgacgaaggagttcatGatgcccatggccttggacga	13	9	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149783693	T	T	149783693	2	4	70	1	0	0	0	0	0	0	0	1	7247	1280	45	3		3	HIST2H2BF	1	149783693	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4470581	149783693	99466928	25	77886											
C1orf54	79630	broad.mit.edu	37	chr1	150246364	150246365	+	Intron	DEL	GA	-	-													aaggagtatgactattggagGagagagagagagagagaaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150246365	-	-	150246364	6	5	70	0	1	1	0	1	0	0	0	0	2068	1189	41	0		0	C1orf54	1	150246364	Intron	DEL	GA	TCGA-17-Z041-01A-01W-0746-08	462671	150246364	99004257	26	77887											
PIP5K1A	8394	broad.mit.edu	37	chr1	151220894	151220895	+	3'UTR	DEL	AG	-	-													tttttctgaaaaaaggaaaaAgcacacagcacacaatttca					rs142834474		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151220895	-	-	151220894	6	5	70	0	1	1	0	1	0	0	0	0	12034	87	3	0		0	PIP5K1A	1	151220894	3'UTR	DEL	AG	TCGA-17-Z041-01A-01W-0746-08	974530	151220894	98029727	27	77888											
PGLYRP3	114771	broad.mit.edu	37	chr1	153285078	153285079	+	5'Flank	INS	-	ACACAC	ACACAC													atgaagacttctaaagaaatINSacacacacacacacacacac					rs144498805	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACACAC	153285079	ACACAC	ACACAC	153285078	6	5	70	0	1	1	1	0	0	0	0	0	11890	1421	49	0		0	PGLYRP3	1	153285078	5'Flank	INS	-	TCGA-17-Z041-01A-01W-0746-08	2064184	153285078	95965543	28	77889											
NPR1	4881	broad.mit.edu	37	chr1	153659434	153659434	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagtaggaccctgcacccTcctccaactcccagggggat	9	16	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153659434	C	C	153659434	1	2	70	0	1	0	0	0	0	0	0	0	10689	1566	54	5		5	NPR1	1	153659434	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	374356	153659434	95591187	29	77890											
DCST1	149095	broad.mit.edu	37	chr1	155020445	155020446	+	Intron	DEL	CA	-	-													tctccacccctacacacctgCacacacacacacacaccacc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155020446	-	-	155020445	6	5	70	0	1	1	0	1	0	0	0	0	4335	725	25	0		0	DCST1	1	155020445	Intron	DEL	CA	TCGA-17-Z041-01A-01W-0746-08	1361011	155020445	94230176	30	77891											
SMG5	23381	broad.mit.edu	37	chr1	156245518	156245519	+	Intron	INS	-	T	T													actaaccctttgaagtgatcINSttttttttaaagctgtggac					rs148217920	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156245519	T	T	156245518	6	5	70	0	1	1	1	0	0	0	0	0	14910	928	32	0		0	SMG5	1	156245518	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1225073	156245518	93005103	31	77892											
KIRREL	55243	broad.mit.edu	37	chr1	158025752	158025752	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctaccacctgaggacttcTggtttcttacccatgagcag	8	12	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158025752	C	C	158025752	1	2	70	0	1	0	0	0	0	0	0	0	8395	1595	55	5		5	KIRREL	1	158025752	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1780234	158025752	91224869	32	77893											
CADM3	57863	broad.mit.edu	37	chr1	159151878	159151879	+	Intron	INS	-	CA	CA													cacacacacacacacacacgINScacacacacatgccacctgt					rs148374819	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	159151879	CA	CA	159151878	6	5	70	0	1	1	1	0	0	0	0	0	2594	1102	38	0		0	CADM3	1	159151878	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1126126	159151878	90098743	33	77894											
CADM3	57863	broad.mit.edu	37	chr1	159159589	159159589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagcaggatttggagctGggaactctggctccactcga	14	10	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159159589	T	T	159159589	1	4	70	0	1	0	0	0	0	0	0	0	2594	1335	47	2		2	CADM3	1	159159589	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7711	159159589	90091032	34	77895											
FCRL6	343413	broad.mit.edu	37	chr1	159783447	159783447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctgtatctcaggaattGgagtgatctggggaaggaaa	14	6	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159783447	T	T	159783447	1	4	70	0	1	0	0	0	0	0	0	0	5856	1363	47	2		2	FCRL6	1	159783447	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	623858	159783447	89467174	35	77896											
CD48	962	broad.mit.edu	37	chr1	160657060	160657060	+	Intron	DEL	C	-	-													aacattgctgttatcttgttCttttttcaaggtgcccagat					rs71090319		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160657060	-	-	160657060	6	5	70	0	1	1	0	1	0	0	0	0	3050	928	32	0		0	CD48	1	160657060	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	873613	160657060	88593561	36	77897											
DUSP27	92235	broad.mit.edu	37	chr1	167068053	167068053	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggttactttgggctttctCtaagcatggtagctaaattc	10	7	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167068053	G	G	167068053	1	3	70	0	1	0	0	0	0	0	0	0	4864	928	32	4		4	DUSP27	1	167068053	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	6410993	167068053	82182568	37	77898											
CREG1	8804	broad.mit.edu	37	chr1	167517204	167517204	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgaatacgatggtgttctGaaaccatctcccttcctgta	8	10	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167517204	C	C	167517204	1	2	70	0	1	0	0	0	0	0	0	0	3896	1305	45	4		4	CREG1	1	167517204	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	449151	167517204	81733417	38	77899											
SELP	6403	broad.mit.edu	37	chr1	169566526	169566526	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttattaagcacctatattCcaggtattttgctaggcagc	7	8	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169566526	A	A	169566526	1	1	70	0	1	0	0	0	0	0	0	0	14132	870	30	3		3	SELP	1	169566526	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2049322	169566526	79684095	39	77900											
DNM3	26052	broad.mit.edu	37	chr1	171998477	171998477	+	Intron	DEL	G	-	-													tatcccaatagatgcagaaaGgcctacaaaattcaacatcc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171998477	-	-	171998477	6	5	70	0	1	1	0	1	0	0	0	0	4713	1015	35	0		0	DNM3	1	171998477	Intron	DEL	G	TCGA-17-Z041-01A-01W-0746-08	2431951	171998477	77252144	40	77901											
DNM3	26052	broad.mit.edu	37	chr1	172350212	172350213	+	Intron	DEL	CA	-	-													cacatgcacacacatatgcgCacacacacacacacacacac					rs5778732		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	172350213	-	-	172350212	6	5	70	0	1	1	0	1	0	0	0	0	4713	725	25	0		0	DNM3	1	172350212	Intron	DEL	CA	TCGA-17-Z041-01A-01W-0746-08	351735	172350212	76900409	41	77902											
TNR	7143	broad.mit.edu	37	chr1	175674185	175674185	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagtctccttcagctgggcTaagggcaggaaggtctcaaa	13	9	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175674185	A	A	175674185	1	1	70	0	1	0	0	0	0	0	0	0	16461	1537	53	5		5	TNR	1	175674185	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3323973	175674185	73576436	42	77903											
PAPPA2	60676	broad.mit.edu	37	chr1	176762884	176762884	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattattttttggagtaatTtcagaggctttcaaagcatc	8	6	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176762884	G	G	176762884	1	3	70	0	1	0	0	0	0	0	0	0	11527	1856	64	5		5	PAPPA2	1	176762884	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1088699	176762884	72487737	43	77904											
RALGPS2	55103	broad.mit.edu	37	chr1	178790727	178790728	+	Intron	INS	-	T	T													tttttcatccctctcccccaINSttttttttcaaatcttcaga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178790728	T	T	178790727	6	5	70	0	1	1	1	0	0	0	0	0	13126	232	8	0		0	RALGPS2	1	178790727	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	2027843	178790727	70459894	44	77905											
FAM163A	148753	broad.mit.edu	37	chr1	179739938	179739938	+	Intron	DEL	A	-	-													ccttctctgtgctcacctggAaacgcccccatcataggact					rs112241309		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179739938	-	-	179739938	6	5	70	0	1	1	0	1	0	0	0	0	5522	261	9	0		0	FAM163A	1	179739938	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	949211	179739938	69510683	45	77906											
LAMC2	3918	broad.mit.edu	37	chr1	183174937	183174938	+	Intron	INS	-	GT	GT													agaataaaaagagagtagggINSgtgtgtgtgtgtgtgtgtct					rs142609635	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	183174938	GT	GT	183174937	6	5	70	0	1	1	1	0	0	0	0	0	8687	1247	43	0		0	LAMC2	1	183174937	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3434999	183174937	66075684	46	77907											
NEK7	140609	broad.mit.edu	37	chr1	198248219	198248219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaatataatttcattcaGttactttgtgtatgtgtgat	6	5	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198248219	A	A	198248219	1	1	70	0	1	0	0	0	0	0	0	0	10424	1044	36	4		4	NEK7	1	198248219	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	15073282	198248219	51002402	47	77908											
PTPRC	5788	broad.mit.edu	37	chr1	198681524	198681524	+	Intron	DEL	T	-	-													acattttgggatcacagaaaTtttctttatcttgattgtgg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	198681524	-	-	198681524	6	5	70	0	1	1	0	1	0	0	0	0	12905	1508	52	0		0	PTPRC	1	198681524	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	433305	198681524	50569097	48	77909											
IGFN1	91156	broad.mit.edu	37	chr1	201197372	201197372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaagcttagagagcacgTggtggctccagatttgaacc	12	11	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201197372	C	C	201197372	1	2	70	0	1	0	0	0	0	0	0	0	7660	1711	59	5		5	IGFN1	1	201197372	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	2515848	201197372	48053249	49	77910											
ETNK2	55224	broad.mit.edu	37	chr1	204103819	204103819	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtggaagacacacagctagGaccctggaagagatgtggtg	15	7	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204103819	C	C	204103819	1	2	70	0	1	0	0	0	0	0	0	0	5316	1189	41	4		4	ETNK2	1	204103819	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2906447	204103819	45146802	50	77911											
FAM72A	729533	broad.mit.edu	37	chr1	206153919	206153919	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgttctgagttataacagtAgtaagcattaaagaatttta	8	3	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206153919	T	T	206153919	1	4	70	0	1	0	0	0	0	0	0	0	5665	435	15	5		5	FAM72A	1	206153919	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	2050100	206153919	43096702	51	77912											
FAIM3	9214	broad.mit.edu	37	chr1	207097707	207097708	+	5'Flank	INS	-	GT	GT													gagtgtgtgtgctctgtctaINSgtgtgtgtggtgtgtggtta							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	207097708	GT	GT	207097707	6	5	70	0	1	1	1	0	0	0	0	0	5423	435	15	0		0	FAIM3	1	207097707	5'Flank	INS	-	TCGA-17-Z041-01A-01W-0746-08	943788	207097707	42152914	52	77913											
CR1	1378	broad.mit.edu	37	chr1	207793079	207793079	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttaaatcataaggtttttgGaggaggaagattagtaacat	11	2	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207793079	A	A	207793079	1	1	70	0	1	0	0	0	0	0	0	0	3872	1189	41	4		4	CR1	1	207793079	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	695372	207793079	41457542	53	77914											
CD46	4179	broad.mit.edu	37	chr1	207943592	207943592	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgataaacttaaaaaatcaAtatcaaaattaaagtcataa	2	4	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207943592	G	G	207943592	1	3	70	0	1	0	0	0	0	0	0	0	3048	116	4	5		5	CD46	1	207943592	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	150513	207943592	41307029	54	77915											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209945394	209945394	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtggaggtgtgtgtgcAcatgtgaaggtgtgtgtata	17	3	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209945394	G	G	209945394	1	3	70	0	1	0	0	0	0	0	0	0	16566	174	6	5		5	TRAF3IP3	1	209945394	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	2001802	209945394	39305227	55	77916											
KCNH1	3756	broad.mit.edu	37	chr1	211017356	211017356	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgatgagaccacaaagaagGacttctgtcatggcccatgt	10	10	2	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211017356	T	T	211017356	1	4	70	0	1	0	0	0	0	0	0	0	8101	1189	41	3		3	KCNH1	1	211017356	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1071962	211017356	38233265	56	77917											
RPS6KC1	26750	broad.mit.edu	37	chr1	213369005	213369005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattatatcatacttatactGttgcgtcttcataacttagc	4	9	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213369005	T	T	213369005	1	4	70	0	1	0	0	0	0	0	0	0	13769	1392	48	3		3	RPS6KC1	1	213369005	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2351649	213369005	35881616	57	77918											
USH2A	7399	broad.mit.edu	37	chr1	216465755	216465755	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtaaagaaaataaagctgtGattttctttcattttattga	6	3	2	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216465755	T	T	216465755	1	4	70	0	1	0	0	0	0	0	0	0	17162	1305	45	3		3	USH2A	1	216465755	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3096750	216465755	32784866	58	77919											
EPRS	2058	broad.mit.edu	37	chr1	220145572	220145572	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacataagcacaatttaaTgaaaagacaacctgggagtg	8	7	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220145572	C	C	220145572	1	2	70	0	1	0	0	0	0	0	0	0	5233	1479	51	5		5	EPRS	1	220145572	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3679817	220145572	29105049	59	77920											
C1orf115	79762	broad.mit.edu	37	chr1	220869867	220869867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatctttatatatgtcgccGtgactcattttttttcatga	6	7	3	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220869867	T	T	220869867	1	4	70	0	1	0	0	0	0	0	0	0	2008	1160	40	3		3	C1orf115	1	220869867	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	724295	220869867	28380754	60	77921											
LBR	3930	broad.mit.edu	37	chr1	225596863	225596864	+	Intron	INS	-	AT	AT													acgtggaatttttaaagtcaINSatttgaagtgttatcaccac					rs148029475	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	225596864	AT	AT	225596863	6	5	70	0	1	1	1	0	0	0	0	0	8724	145	5	0		0	LBR	1	225596863	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	4726996	225596863	23653758	61	77922											
SRP9	6726	broad.mit.edu	37	chr1	225963591	225963592	+	5'Flank	DEL	GT	-	-													acacacacacacacacacacGtgtctcattaaatgaggatt					rs139640255		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	225963592	-	-	225963591	6	5	70	0	1	1	0	1	0	0	0	0	15276	1160	40	0		0	SRP9	1	225963591	5'Flank	DEL	GT	TCGA-17-Z041-01A-01W-0746-08	366728	225963591	23287030	62	77923											
COG2	22796	broad.mit.edu	37	chr1	230783953	230783953	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagggccatcacttaatttAaaacaaattgtaacccatct	5	9	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230783953	G	G	230783953	1	3	70	0	1	0	0	0	0	0	0	0	3690	377	13	5		5	COG2	1	230783953	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	4820362	230783953	18466668	63	77924											
PCNXL2	80003	broad.mit.edu	37	chr1	233224940	233224940	+	Intron	DEL	A	-	-													aaaatgtaaacaaattacggAaaaaaggattagggtttaaa					rs35772907		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	233224940	-	-	233224940	6	5	70	0	1	1	0	1	0	0	0	0	11686	261	9	0		0	PCNXL2	1	233224940	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	2440987	233224940	16025681	64	77925											
SLC35F3	148641	broad.mit.edu	37	chr1	234076116	234076117	+	Intron	DEL	AG	-	-													agacacacacacacacacacAgagagagagagagagagaga					rs146219117		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	234076117	-	-	234076116	6	5	70	0	1	1	0	1	0	0	0	0	14704	203	7	0		0	SLC35F3	1	234076116	Intron	DEL	AG	TCGA-17-Z041-01A-01W-0746-08	851176	234076116	15174505	65	77926											
ACTN2	88	broad.mit.edu	37	chr1	236894717	236894717	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttatagcgaagttacatcCgaagtactttggattcctaa	7	7	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236894717	T	T	236894717	1	4	70	0	1	0	0	0	0	0	0	0	205	667	23	4		4	ACTN2	1	236894717	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2818601	236894717	12355904	66	77927											
RYR2	6262	broad.mit.edu	37	chr1	237759120	237759120	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctagcaagccctcctcaTagctgtcccagccactgcac	6	20	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237759120	C	C	237759120	1	2	70	0	1	0	0	0	0	0	0	0	13880	1421	49	5		5	RYR2	1	237759120	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	864403	237759120	11491501	67	77928											
PLD5	200150	broad.mit.edu	37	chr1	242463754	242463769	+	Intron	DEL	AAGAAAGAAAGAAAGA	-	-													gggagaggaggaggaggaagAagaaagaaagaaagaaagaa					rs112718417		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	242463769	-	-	242463754	6	5	70	0	1	1	0	1	0	0	0	0	12144	261	9	0		0	PLD5	1	242463754	Intron	DEL	AAGAAAGAAAGAAAGA	TCGA-17-Z041-01A-01W-0746-08	4704634	242463754	6786867	68	77929											
CEP170	9859	broad.mit.edu	37	chr1	243362555	243362555	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacagaaaagaatacactttCgcagaatgctagaactgcct	7	9	0	4	rs147033751	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243362555	T	T	243362555	1	4	70	0	1	0	0	0	0	0	0	0	3280	899	31	4		4	CEP170	1	243362555	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	898801	243362555	5888066	69	77930											
SNTG2	54221	broad.mit.edu	37	chr2	1133358	1133358	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctgttctccaggtcagtAttgtacacgttaatccttaa	7	9	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1133358	G	G	1133358	1	3	70	0	1	0	0	0	0	0	0	0	14989	464	16	5		5	SNTG2	2	1133358	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08		1133358	242066015	70	77931											
SNTG2	54221	broad.mit.edu	37	chr2	1292418	1292421	+	Intron	DEL	ATAC	-	-													ggcacagcacacacatgaagAtacatacatacatttttgtg					rs80159878		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1292421	-	-	1292418	6	5	70	0	1	1	0	1	0	0	0	0	14989	348	12	0		0	SNTG2	2	1292418	Intron	DEL	ATAC	TCGA-17-Z041-01A-01W-0746-08	159060	1292418	241906955	71	77932											
VSNL1	7447	broad.mit.edu	37	chr2	17723473	17723474	+	Intron	DEL	TG	-	-													ttaaactgcctacgtgtgttTgtgtgtgtgtggtggggggg					rs34052744		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17723474	-	-	17723473	6	5	70	0	1	1	0	1	0	0	0	0	17354	1827	63	0		0	VSNL1	2	17723473	Intron	DEL	TG	TCGA-17-Z041-01A-01W-0746-08	16431055	17723473	225475900	72	77933											
GPR113	165082	broad.mit.edu	37	chr2	26535144	26535145	+	Intron	INS	-	G	G													agctgtttggccaaccacctINSggggcatcttcaaggatatg					rs143473765	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26535145	G	G	26535144	6	5	70	0	1	1	1	0	0	0	0	0	6695	1595	55	0		0	GPR113	2	26535144	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	8811671	26535144	216664229	73	77934											
OTOF	9381	broad.mit.edu	37	chr2	26695491	26695491	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagcccccattgcacaGcacacggcagcgccggagaa	14	14	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26695491	A	A	26695491	2	1	70	1	0	0	0	0	0	0	0	1	11397	962	34	4		4	OTOF	2	26695491	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	160347	26695491	216503882	74	77935											
ALK	238	broad.mit.edu	37	chr2	30067726	30067733	+	Intron	DEL	CACACACA	-	-													tcaccctgataacccccctgCacacacacacacacacacac							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30067733	-	-	30067726	6	5	70	0	1	1	0	1	0	0	0	0	525	725	25	0		0	ALK	2	30067726	Intron	DEL	CACACACA	TCGA-17-Z041-01A-01W-0746-08	3372235	30067726	213131647	75	77936											
LCLAT1	253558	broad.mit.edu	37	chr2	30723950	30723951	+	Intron	INS	-	TGTA	TGTA													tttgttttgttctgtgtgtgINStgtgtgtgtgtgtatgtgtg					rs143701990	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGTA	30723951	TGTA	TGTA	30723950	6	5	70	0	1	1	1	0	0	0	0	0	8749	1392	48	0		0	LCLAT1	2	30723950	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	656224	30723950	212475423	76	77937											
LTBP1	4052	broad.mit.edu	37	chr2	33568261	33568261	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagaattgcttgagaccagGagtttgagaccagcctgggt	15	7	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33568261	T	T	33568261	1	4	70	0	1	0	0	0	0	0	0	0	9160	1189	41	3		3	LTBP1	2	33568261	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2844311	33568261	209631112	77	77938											
CRIM1	51232	broad.mit.edu	37	chr2	36687349	36687350	+	Intron	INS	-	T	T													attgatcattatattaactcINStaaggattacattagaggct					rs148542839	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36687350	T	T	36687349	6	5	70	0	1	1	1	0	0	0	0	0	3905	928	32	0		0	CRIM1	2	36687349	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3119088	36687349	206512024	78	77939											
PSME4	23198	broad.mit.edu	37	chr2	54163869	54163870	+	Intron	INS	-	G	G													aaaagaaaaaaaaaactataINSggggggaagaaagggaaaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54163870	G	G	54163869	6	5	70	0	1	1	1	0	0	0	0	0	12815	435	15	0		0	PSME4	2	54163869	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	17476520	54163869	189035504	79	77940											
ACYP2	98	broad.mit.edu	37	chr2	54428012	54428013	+	Intron	INS	-	GT	GT													attttgcattcccactggcaINSgtgtatgagtgttctaattt					rs145654225	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	54428013	GT	GT	54428012	6	5	70	0	1	1	1	0	0	0	0	0	229	203	7	0		0	ACYP2	2	54428012	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	264143	54428012	188771361	80	77941											
FANCL	55120	broad.mit.edu	37	chr2	58431198	58431198	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctagcacttctttacattgaGagcattcacagagttcattt	6	9	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58431198	A	A	58431198	1	1	70	0	1	0	0	0	0	0	0	0	5727	957	33	4		4	FANCL	2	58431198	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4003186	58431198	184768175	81	77942											
KIAA1841	84542	broad.mit.edu	37	chr2	61361050	61361050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaccactggattgtacCatttaaatgggcgaattgta	8	6	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61361050	A	A	61361050	1	1	70	0	1	0	0	0	0	0	0	0	8331	609	21	2		2	KIAA1841	2	61361050	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2929852	61361050	181838323	82	77943											
C2orf86	51057	broad.mit.edu	37	chr2	63439152	63439152	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtatctgaaagtgacaggGagaatggaaccaacttggaa	13	5	1	3	rs141189776	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63439152	A	A	63439152	1	1	70	0	1	0	0	0	0	0	0	0	2223	1189	41	4		4	C2orf86	2	63439152	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2078102	63439152	179760221	83	77944											
ANTXR1	84168	broad.mit.edu	37	chr2	69411196	69411197	+	Intron	DEL	CA	-	-													tccatacacatacacacactCacacacacacacacacacag					rs66480718		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69411197	-	-	69411196	6	5	70	0	1	1	0	1	0	0	0	0	711	841	29	0		0	ANTXR1	2	69411196	Intron	DEL	CA	TCGA-17-Z041-01A-01W-0746-08	5972044	69411196	173788177	84	77945											
GMCL1	64395	broad.mit.edu	37	chr2	70105740	70105740	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgtaagtatttgatagaaAtttttgcaataatgaaaata	6	1	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70105740	G	G	70105740	1	3	70	0	1	0	0	0	0	0	0	0	6549	116	4	5		5	GMCL1	2	70105740	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	694544	70105740	173093633	85	77946											
TACR1	6869	broad.mit.edu	37	chr2	75405662	75405663	+	Intron	INS	-	A	A													tacaatacctttccccattgINSaaaaaaaaacaactccctta					rs147479589	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75405663	A	A	75405662	6	5	70	0	1	1	1	0	0	0	0	0	15624	1305	45	0		0	TACR1	2	75405662	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	5299922	75405662	167793711	86	77947											
CAPG	822	broad.mit.edu	37	chr2	85624828	85624831	+	Intron	DEL	AAAG	-	-													agagcaagattccttctcaaAaagaaagaaagaaagaaaga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85624831	-	-	85624828	6	5	70	0	1	1	0	1	0	0	0	0	2647	29	1	0		0	CAPG	2	85624828	Intron	DEL	AAAG	TCGA-17-Z041-01A-01W-0746-08	10219166	85624828	157574545	87	77948											
EIF2AK3	9451	broad.mit.edu	37	chr2	88882865	88882865	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttttatttttctagataTccacacattaaaaaaaaagt	3	5	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88882865	C	C	88882865	1	2	70	0	1	0	0	0	0	0	0	0	5038	1450	50	5		5	EIF2AK3	2	88882865	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3258037	88882865	154316508	88	77949											
CHST10	9486	broad.mit.edu	37	chr2	101015860	101015860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcgtaagccaccacgCccggccatatctatctctta	7	15	2	0	rs148544854	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101015860	A	A	101015860	1	1	70	0	1	0	0	0	0	0	0	0	3429	754	26	3		3	CHST10	2	101015860	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	12132995	101015860	142183513	89	77950											
DPP10	57628	broad.mit.edu	37	chr2	116510743	116510743	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacattttaattttgtttccAaactagagaatactatatca	3	6	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116510743	G	G	116510743	1	3	70	0	1	0	0	0	0	0	0	0	4767	145	5	5		5	DPP10	2	116510743	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	15494883	116510743	126688630	90	77951											
CNTNAP5	129684	broad.mit.edu	37	chr2	125282032	125282032	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagctactattttggaggtAaattctccagtctttaagag	8	6	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125282032	G	G	125282032	1	3	70	0	1	0	0	0	0	0	0	0	3682	377	13	5		5	CNTNAP5	2	125282032	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	8771289	125282032	117917341	91	77952											
CNTNAP5	129684	broad.mit.edu	37	chr2	125517969	125517969	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataagcttaccaagcagcaGttaaccaaaattcgttgatg	7	8	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125517969	A	A	125517969	1	1	70	0	1	0	0	0	0	0	0	0	3682	1044	36	4		4	CNTNAP5	2	125517969	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	235937	125517969	117681404	92	77953											
SMPD4	55627	broad.mit.edu	37	chr2	130913574	130913574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatatccacctgggggagcCagtggcatgtctgtgagagg	15	9	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130913574	A	A	130913574	1	1	70	0	1	0	0	0	0	0	0	0	14921	609	21	2		2	SMPD4	2	130913574	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5395605	130913574	112285799	93	77954											
POTEE	445582	broad.mit.edu	37	chr2	131976592	131976592	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggacctggctttctcgcctCcgcaggcctcacaccaccct	9	19	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131976592	A	A	131976592	1	1	70	0	1	0	0	0	0	0	0	0	12360	870	30	3		3	POTEE	2	131976592	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1063018	131976592	111222781	94	77955											
LRP1B	53353	broad.mit.edu	37	chr2	141819712	141819712	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctacccagtaaaccaattTgttgactaggtctagtgcca	7	10	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141819712	G	G	141819712	3	3	70	1	0	0	0	0	1	0	0	0	9042	1821	63	5	12991	5	LRP1B	2	141819712	Missense_Mutation	SNP	T	TCGA-17-Z041-01A-01W-0746-08	9843120	141819712	101379661	95	77956											
LRP1B	53353	broad.mit.edu	37	chr2	142238161	142238161	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctaaatggtaaaactgTtaagcacaagaaattactag	6	5	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142238161	C	C	142238161	1	2	70	0	1	0	0	0	0	0	0	0	9042	1740	60	5		5	LRP1B	2	142238161	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	418449	142238161	100961212	96	77957											
ITGB6	3694	broad.mit.edu	37	chr2	161052671	161052671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagacacattagcaaggtaGcagaattaccatatatgaca	7	8	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161052671	T	T	161052671	1	4	70	0	1	0	0	0	0	0	0	0	7969	986	34	3		3	ITGB6	2	161052671	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	18814510	161052671	82146702	97	77958											
TTN	7273	broad.mit.edu	37	chr2	179447952	179447952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcaggtctatcctgggagGgactggaaagaaataagata	12	6	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179447952	A	A	179447952	3	1	70	1	0	0	0	0	1	0	0	0	16861	1232	43	4	42601	4	TTN	2	179447952	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	18395281	179447952	63751421	98	77959											
STAT1	6772	broad.mit.edu	37	chr2	191843736	191843736	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatgatgcacctggatatCgaagagatggacggatgggc	14	9	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191843736	A	A	191843736	1	1	70	0	1	0	0	0	0	0	0	0	15382	899	31	3		3	STAT1	2	191843736	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	12395784	191843736	51355637	99	77960											
OBFC2A	64859	broad.mit.edu	37	chr2	192546676	192546676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttctctctaggtatGcatccatgtggaaaggatgt	9	7	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192546676	T	T	192546676	3	4	70	1	0	0	0	0	1	0	0	0	10903	1319	46	3	245	3	OBFC2A	2	192546676	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	702940	192546676	50652697	100	77961											
DNAH7	56171	broad.mit.edu	37	chr2	196611769	196611769	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaacccttcaaaaaatTaatgaatccaggagctggtt	6	7	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196611769	C	C	196611769	1	2	70	0	1	0	0	0	0	0	0	0	4646	1769	61	5		5	DNAH7	2	196611769	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	4065093	196611769	46587604	101	77962											
AOX1	316	broad.mit.edu	37	chr2	201515911	201515911	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttggccttggctcacGtgctgctggtcaggtgagtt	14	10	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201515911	A	A	201515911	3	1	70	1	0	0	0	0	1	0	0	0	731	1145	40	4	3164	4	AOX1	2	201515911	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4904142	201515911	41683462	102	77963											
SPEG	10290	broad.mit.edu	37	chr2	220336998	220336998	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaggtggtggctgtgacGgggaggatggtcacactcac	17	10	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220336998	T	T	220336998	2	4	70	1	0	0	0	0	0	0	0	1	15154	1103	39	1		1	SPEG	2	220336998	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	18821087	220336998	22862375	103	77964											
SUMF1	285362	broad.mit.edu	37	chr3	4338147	4338148	+	Intron	INS	-	A	A													aaaagaggtttaatggactcINSacagtttcacatggctgggg					rs141964700	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4338148	A	A	4338147	6	5	70	0	1	1	1	0	0	0	0	0	15503	841	29	0		0	SUMF1	3	4338147	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08		4338147	193684283	104	77965											
GRM7	2917	broad.mit.edu	37	chr3	6982717	6982717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcctgtggccacttaagCctccatcagtccctgcctct	8	18	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6982717	A	A	6982717	1	1	70	0	1	0	0	0	0	0	0	0	6868	754	26	3		3	GRM7	3	6982717	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2644570	6982717	191039713	105	77966											
SRGAP3	9901	broad.mit.edu	37	chr3	9181824	9181825	+	Intron	INS	-	AT	AT													atacacacacacacacacacINSacacacacacatacatacac					rs140660996	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	9181825	AT	AT	9181824	6	5	70	0	1	1	1	0	0	0	0	0	15265	493	17	0		0	SRGAP3	3	9181824	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	2199107	9181824	188840606	106	77967											
GALNTL2	117248	broad.mit.edu	37	chr3	16077196	16077196	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcctcctagcactccAggggagaggcagggctttct	11	12	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16077196	G	G	16077196	1	3	70	0	1	0	0	0	0	0	0	0	6284	203	7	5		5	GALNTL2	3	16077196	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	6895372	16077196	181945234	107	77968											
KCNH8	131096	broad.mit.edu	37	chr3	19554673	19554673	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggaacggtgccctttcActcgcctatcagagtctcca	9	15	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19554673	T	T	19554673	3	4	70	1	0	0	0	0	1	0	0	0	8108	159	6	5	2341	5	KCNH8	3	19554673	Missense_Mutation	SNP	A	TCGA-17-Z041-01A-01W-0746-08	3477477	19554673	178467757	108	77969											
ZNF385D	79750	broad.mit.edu	37	chr3	22019617	22019618	+	Intron	DEL	TG	-	-													acttttaccctgttctgtttTgtgtttttattaatcatctc					rs3830394		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22019618	-	-	22019617	6	5	70	0	1	1	0	1	0	0	0	0	18004	1827	63	0		0	ZNF385D	3	22019617	Intron	DEL	TG	TCGA-17-Z041-01A-01W-0746-08	2464944	22019617	176002813	109	77970											
UBE2E2	7325	broad.mit.edu	37	chr3	23339135	23339135	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttctgttccattggtctAtatctctgttttggtaccag	8	9	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23339135	G	G	23339135	1	3	70	0	1	0	0	0	0	0	0	0	16979	464	16	5		5	UBE2E2	3	23339135	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	1319518	23339135	174683295	110	77971											
THRB	7068	broad.mit.edu	37	chr3	24310879	24310882	+	Intron	DEL	CGCG	-	-													atagctcatcatagctcacaCgcgcgcgcgcgcgcgcacac					rs10575859		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24310882	-	-	24310879	6	5	70	0	1	1	0	1	0	0	0	0	15998	551	19	0		0	THRB	3	24310879	Intron	DEL	CGCG	TCGA-17-Z041-01A-01W-0746-08	971744	24310879	173711551	111	77972											
RARB	5915	broad.mit.edu	37	chr3	25586040	25586040	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgttgcttgtcagacactGatgtttagctgaacacacca	9	9	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25586040	T	T	25586040	1	4	70	0	1	0	0	0	0	0	0	0	13161	1305	45	3		3	RARB	3	25586040	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1275161	25586040	172436390	112	77973											
LRRFIP2	9209	broad.mit.edu	37	chr3	37134515	37134515	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattttttgtatttttagtaGagacggggtttcactatgtt	9	3	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37134515	T	T	37134515	1	4	70	0	1	0	0	0	0	0	0	0	9115	957	33	3		3	LRRFIP2	3	37134515	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	11548475	37134515	160887915	113	77974											
SCN5A	6331	broad.mit.edu	37	chr3	38596259	38596259	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgggcttcaaggcccaTccccagagctccatcttcca	7	17	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38596259	C	C	38596259	1	2	70	0	1	0	0	0	0	0	0	0	14035	1450	50	5		5	SCN5A	3	38596259	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1461744	38596259	159426171	114	77975											
ULK4	54986	broad.mit.edu	37	chr3	41858569	41858570	+	Intron	INS	-	GC	GC													tggggaaactgtgtgtgtgtINSgtgtgtgtgtgtgtactcac							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	41858570	GC	GC	41858569	6	5	70	0	1	1	1	0	0	0	0	0	17104	1711	59	0		0	ULK4	3	41858569	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3262310	41858569	156163861	115	77976											
LAMB2	3913	broad.mit.edu	37	chr3	49163968	49163968	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtgcagtgggtcatctaGgggccctgtacaaatcatct	12	10	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49163968	C	C	49163968	1	2	70	0	1	0	0	0	0	0	0	0	8683	1015	35	4		4	LAMB2	3	49163968	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7305399	49163968	148858462	116	77977											
DOCK3	1795	broad.mit.edu	37	chr3	50907148	50907149	+	Intron	INS	-	TT	TT													attttgggtttgatttgctcINSgctttgctagtcctttaaga					rs141808824	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50907149	TT	TT	50907148	6	5	70	0	1	1	1	0	0	0	0	0	4728	899	31	0		0	DOCK3	3	50907148	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1743180	50907148	147115282	117	77978											
PPM1M	132160	broad.mit.edu	37	chr3	52281236	52281236	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggcattggagagtgcctttCaggaatgtgtgagtgtgtgg	18	4	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52281236	A	A	52281236	3	1	70	1	0	0	0	0	1	0	0	0	12446	827	29	3	108	3	PPM1M	3	52281236	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1374088	52281236	145741194	118	77979											
CACNA2D3	55799	broad.mit.edu	37	chr3	54751774	54751776	+	Intron	DEL	GTG	-	-													tgtgtgtgtgcatgtgtggtGtggtgtgtgcaagcgtgtgt							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54751776	-	-	54751774	6	5	70	0	1	1	0	1	0	0	0	0	2576	1392	48	0		0	CACNA2D3	3	54751774	Intron	DEL	GTG	TCGA-17-Z041-01A-01W-0746-08	2470538	54751774	143270656	119	77980											
PXK	54899	broad.mit.edu	37	chr3	58402325	58402327	+	Intron	DEL	AGG	-	-													ggcctctgcagagtgagagcAggaggactctgagcctaggg					rs151217600		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58402327	-	-	58402325	6	5	70	0	1	1	0	1	0	0	0	0	12957	203	7	0		0	PXK	3	58402325	Intron	DEL	AGG	TCGA-17-Z041-01A-01W-0746-08	3650551	58402325	139620105	120	77981											
FHIT	2272	broad.mit.edu	37	chr3	59851393	59851393	+	Intron	DEL	T	-	-													ttttaccctttgcaatctacTttatggctcctctgcaaaga					rs34877048		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59851393	-	-	59851393	6	5	70	0	1	1	0	1	0	0	0	0	5934	1624	56	0		0	FHIT	3	59851393	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	1449068	59851393	138171037	121	77982											
SUCLG2	8801	broad.mit.edu	37	chr3	67611190	67611190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactccttcacacacagaaCatcacaccaggtcttccttt	3	15	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67611190	A	A	67611190	1	1	70	0	1	0	0	0	0	0	0	0	15483	493	17	3		3	SUCLG2	3	67611190	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	7759797	67611190	130411240	122	77983											
GBE1	2632	broad.mit.edu	37	chr3	81541828	81541829	+	Intron	INS	-	TTCTCCCT	TTCTCCCT													tcttccttccccttctcccaINSttctccctttctccctttct					rs149554537	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTCTCCCT	81541829	TTCTCCCT	TTCTCCCT	81541828	6	5	70	0	1	1	1	0	0	0	0	0	6332	232	8	0		0	GBE1	3	81541828	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	13930638	81541828	116480602	123	77984											
TBC1D23	55773	broad.mit.edu	37	chr3	100030628	100030629	+	Intron	INS	-	T	T													tttgttttaaagctgttgcaINSttttttttataatcattttg					rs143827885	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100030629	T	T	100030628	6	5	70	0	1	1	1	0	0	0	0	0	15732	232	8	0		0	TBC1D23	3	100030628	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	18488800	100030628	97991802	124	77985											
ALCAM	214	broad.mit.edu	37	chr3	105188012	105188012	+	Intron	DEL	G	-	-													attcccccaacaagtattgcGgggttttttgttgttgatac					rs78637040		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105188012	-	-	105188012	6	5	70	0	1	1	0	1	0	0	0	0	487	1131	39	0		0	ALCAM	3	105188012	Intron	DEL	G	TCGA-17-Z041-01A-01W-0746-08	5157384	105188012	92834418	125	77986											
GUCA1C	9626	broad.mit.edu	37	chr3	108634376	108634376	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacctctgaagaagaaaggTacctcctctgagctaaacag	8	11	2	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108634376	C	C	108634376	1	2	70	0	1	0	0	0	0	0	0	0	6955	1653	57	5		5	GUCA1C	3	108634376	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3446364	108634376	89388054	126	77987											
TMPRSS7	344805	broad.mit.edu	37	chr3	111774564	111774565	+	Intron	INS	-	TT	TT													aaaaagcagagttcacaatcINSagtaccaggcaacactgaaa					rs34141477		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	111774565	TT	TT	111774564	6	5	70	0	1	1	1	0	0	0	0	0	16375	841	29	0		0	TMPRSS7	3	111774564	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3140188	111774564	86247866	127	77988											
ALG1L	200810	broad.mit.edu	37	chr3	125651602	125651603	+	Intron	INS	-	T	T													ggaatttctgatagaatttcINStttttttttttcttctgaca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125651603	T	T	125651602	6	5	70	0	1	1	1	0	0	0	0	0	517	928	32	0		0	ALG1L	3	125651602	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	13877038	125651602	72370828	128	77989											
CPNE4	131034	broad.mit.edu	37	chr3	131788772	131788772	+	Intron	DEL	C	-	-													ggggctcagaatatgatacaCaaaaatatggcaccttgaca					rs35483905		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131788772	-	-	131788772	6	5	70	0	1	1	0	1	0	0	0	0	3846	493	17	0		0	CPNE4	3	131788772	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	6137170	131788772	66233658	129	77990											
MRPS22	56945	broad.mit.edu	37	chr3	139064280	139064281	+	Intron	INS	-	T	T													tatgttctctgccagtggtgINStttttttttttgtttttttt					rs76525911		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139064281	T	T	139064280	6	5	70	0	1	1	1	0	0	0	0	0	9927	1392	48	0		0	MRPS22	3	139064280	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	7275508	139064280	58958150	130	77991											
SLC9A9	285195	broad.mit.edu	37	chr3	143543281	143543281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcattaggactcagctcCgattcacctcagtgaggcct	8	13	4	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143543281	A	A	143543281	1	1	70	0	1	0	0	0	0	0	0	0	14835	667	23	1		1	SLC9A9	3	143543281	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	4479001	143543281	54479149	131	77992											
TSC22D2	9819	broad.mit.edu	37	chr3	150176593	150176593	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcctctctctgagatgtcAtgcagcgctgttgatgtcca	9	11	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150176593	G	G	150176593	1	3	70	0	1	0	0	0	0	0	0	0	16733	232	8	5		5	TSC22D2	3	150176593	3'UTR	SNP	A	TCGA-17-Z041-01A-01W-0746-08	6633312	150176593	47845837	132	77993											
VEPH1	79674	broad.mit.edu	37	chr3	157007825	157007840	+	Intron	DEL	ACACACACACACACAC	-	-													tccgttgttattatacacaaAcacacacacacacacacaca					rs72130183		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	157007840	-	-	157007825	6	5	70	0	1	1	0	1	0	0	0	0	17281	58	2	0		0	VEPH1	3	157007825	Intron	DEL	ACACACACACACACAC	TCGA-17-Z041-01A-01W-0746-08	6831232	157007825	41014605	133	77994											
RSRC1	51319	broad.mit.edu	37	chr3	158077663	158077663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaacaagatgaagagggGcttattgagcaatagaacag	14	4	0	6			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158077663	T	T	158077663	1	4	70	0	1	0	0	0	0	0	0	0	13825	1218	42	3		3	RSRC1	3	158077663	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1069838	158077663	39944767	134	77995											
SCHIP1	29970	broad.mit.edu	37	chr3	158969410	158969411	+	Intron	INS	-	AT	AT													tttcttgaaatttttattgcINSacacacacacacacacccct					rs149413911	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	158969411	AT	AT	158969410	6	5	70	0	1	1	1	0	0	0	0	0	14017	725	25	0		0	SCHIP1	3	158969410	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	891747	158969410	39053020	135	77996											
PPM1L	151742	broad.mit.edu	37	chr3	160716777	160716777	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaagccggtggtgaaaaGaaccatgttttctcagttaa	10	6	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160716777	C	C	160716777	1	2	70	0	1	0	0	0	0	0	0	0	12445	957	33	4		4	PPM1L	3	160716777	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1747367	160716777	37305653	136	77997											
BCHE	590	broad.mit.edu	37	chr3	165515095	165515099	+	Intron	DEL	CCCTT	-	-													tccttcctccctccctccccCccttccttccttccttcctt					rs142594104		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165515099	-	-	165515095	6	5	70	0	1	1	0	1	0	0	0	0	1363	638	22	0		0	BCHE	3	165515095	Intron	DEL	CCCTT	TCGA-17-Z041-01A-01W-0746-08	4798318	165515095	32507335	137	77998											
MECOM	2122	broad.mit.edu	37	chr3	169097308	169097309	+	Intron	INS	-	AG	AG													tttgccagtgtatatgtggaINSagacatttcactccaaggag					rs151139977	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	169097309	AG	AG	169097308	6	5	70	0	1	1	1	0	0	0	0	0	9515	261	9	0		0	MECOM	3	169097308	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3582213	169097308	28925122	138	77999											
SLC7A14	57709	broad.mit.edu	37	chr3	170292786	170292786	+	Intron	DEL	A	-	-													tattgaatgaagggtggaggAaaagtggttagagagaaagg					rs5854380		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170292786	-	-	170292786	6	5	70	0	1	1	0	1	0	0	0	0	14810	261	9	0		0	SLC7A14	3	170292786	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	1195478	170292786	27729644	139	78000											
NCEH1	57552	broad.mit.edu	37	chr3	172355678	172355679	+	Intron	INS	-	A	A													acagagcaagactccatctcINSaaaaaaaaaatagccgggca					rs113338933		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172355679	A	A	172355678	6	5	70	0	1	1	1	0	0	0	0	0	10310	841	29	0		0	NCEH1	3	172355678	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	2062892	172355678	25666752	140	78001											
NLGN1	22871	broad.mit.edu	37	chr3	173502795	173502798	+	Intron	DEL	ATAT	-	-													cacacattaacacaaaacaaAtatatagacagaggcagaaa					rs66612386		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	173502798	-	-	173502795	6	5	70	0	1	1	0	1	0	0	0	0	10556	116	4	0		0	NLGN1	3	173502795	Intron	DEL	ATAT	TCGA-17-Z041-01A-01W-0746-08	1147117	173502795	24519635	141	78002											
NLGN1	22871	broad.mit.edu	37	chr3	173653425	173653426	+	Intron	INS	-	TT	TT													acacacactctctctctctcINStctctctctctctctctgtc					rs149129049		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	173653426	TT	TT	173653425	6	5	70	0	1	1	1	0	0	0	0	0	10556	928	32	0		0	NLGN1	3	173653425	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	150630	173653425	24369005	142	78003											
KCNMB2	10242	broad.mit.edu	37	chr3	178419867	178419867	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagaaaatgtggcacatatAcaccatggaatactatgcag	8	7	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178419867	G	G	178419867	1	3	70	0	1	0	0	0	0	0	0	0	8145	406	14	5		5	KCNMB2	3	178419867	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	4766442	178419867	19602563	143	78004											
MCF2L2	23101	broad.mit.edu	37	chr3	182925220	182925220	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctatgccagccctggcccaTaagctctgaccctggagtca	9	16	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182925220	C	C	182925220	1	2	70	0	1	0	0	0	0	0	0	0	9473	1421	49	5		5	MCF2L2	3	182925220	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	4505353	182925220	15097210	144	78005											
KLHL24	54800	broad.mit.edu	37	chr3	183369446	183369446	+	Intron	DEL	A	-	-													cttggactgcctctacttatAaaaaaacaatttgctcctgg					rs77151438		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	183369446	-	-	183369446	6	5	70	0	1	1	0	1	0	0	0	0	8450	377	13	0		0	KLHL24	3	183369446	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	444226	183369446	14652984	145	78006											
DVL3	1857	broad.mit.edu	37	chr3	183885740	183885740	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggcttcacggaccggaGggaggcccgcaagtatgcca	16	11	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183885740	C	C	183885740	3	2	70	1	0	0	0	0	1	0	0	0	4877	1000	35	4	1435	4	DVL3	3	183885740	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	516294	183885740	14136690	146	78007											
TP63	8626	broad.mit.edu	37	chr3	189390411	189390414	+	Intron	DEL	AAGG	-	-													aaataaagatagaaagaaaaAaggaaggaaggaagggaggg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	189390414	-	-	189390411	6	5	70	0	1	1	0	1	0	0	0	0	16516	29	1	0		0	TP63	3	189390411	Intron	DEL	AAGG	TCGA-17-Z041-01A-01W-0746-08	5504671	189390411	8632019	147	78008											
ZNF595	152687	broad.mit.edu	37	chr4	68417	68417	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcacaaaggcaatgtgatCagcgtggtgttaagttcata	10	7	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68417	T	T	68417	1	4	70	0	1	0	0	0	0	0	0	0	18152	841	29	4		4	ZNF595	4	68417	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08		68417	191085859	148	78009											
LDB2	9079	broad.mit.edu	37	chr4	16582332	16582332	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactgtttcttgcattctgTtcagtgaatgcaaggaatgc	9	8	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16582332	C	C	16582332	1	2	70	0	1	0	0	0	0	0	0	0	8768	1740	60	5		5	LDB2	4	16582332	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	16513915	16582332	174571944	149	78010											
GBA3	57733	broad.mit.edu	37	chr4	22749503	22749503	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaggcttccagaattcactGaagaagagaagaaaatgatc	10	7	1	6			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22749503	C	C	22749503	3	2	70	1	0	0	0	0	1	0	0	0	6330	1291	45	4	881	4	GBA3	4	22749503	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	6167171	22749503	168404773	150	78011											
PDS5A	23244	broad.mit.edu	37	chr4	39953216	39953217	+	Intron	INS	-	A	A													ctcagcaacaacagttggagINScactcaaaagaattctacat					rs144429066	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39953217	A	A	39953216	6	5	70	0	1	1	1	0	0	0	0	0	11785	986	34	0		0	PDS5A	4	39953216	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	17203713	39953216	151201060	151	78012											
LIMCH1	22998	broad.mit.edu	37	chr4	41420437	41420437	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcacaggaatcttggtcaGccacatgcatgtacaggact	11	10	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41420437	A	A	41420437	1	1	70	0	1	0	0	0	0	0	0	0	8869	986	34	4		4	LIMCH1	4	41420437	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1467221	41420437	149733839	152	78013											
GABRB1	2560	broad.mit.edu	37	chr4	47213287	47213287	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggtctcctagtgagtggAgcccaatagtttgaagcaag	14	7	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47213287	C	C	47213287	1	2	70	0	1	0	0	0	0	0	0	0	6226	319	11	5		5	GABRB1	4	47213287	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	5792850	47213287	143940989	153	78014											
CORIN	10699	broad.mit.edu	37	chr4	47620349	47620350	+	Intron	INS	-	A	A													aacaggagtgaaactccatcINSaaaaaaaaaaaaggaaagga					rs144802326		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47620350	A	A	47620349	6	5	70	0	1	1	1	0	0	0	0	0	3784	841	29	0		0	CORIN	4	47620349	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	407062	47620349	143533927	154	78015											
PDCL2	132954	broad.mit.edu	37	chr4	56448421	56448421	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatcctacacaaaaagaaaaGaaaagaaaattaacatggtt	6	5	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56448421	C	C	56448421	1	2	70	0	1	0	0	0	0	0	0	0	11721	957	33	4		4	PDCL2	4	56448421	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	8828072	56448421	134705855	155	78016											
KIAA1211	57482	broad.mit.edu	37	chr4	57131568	57131573	+	Intron	DEL	GGGTGT	-	-													tactcaggggtatagaggagGggtgtgtgtgtgtgtgtgtg					rs73817456		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57131573	-	-	57131568	6	5	70	0	1	1	0	1	0	0	0	0	8285	1247	43	0		0	KIAA1211	4	57131568	Intron	DEL	GGGTGT	TCGA-17-Z041-01A-01W-0746-08	683147	57131568	134022708	156	78017											
TET2	54790	broad.mit.edu	37	chr4	106196707	106196707	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatccatacactttaccaGccaaggtttggaaatagcca	6	13	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106196707	A	A	106196707	2	1	70	1	0	0	0	0	0	0	0	1	15892	962	34	4		4	TET2	4	106196707	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	49065139	106196707	84957569	157	78018											
CFI	3426	broad.mit.edu	37	chr4	110697644	110697644	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgtgaaaagaacaaatctAcatctgattgatgtacctga	7	6	2	5			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110697644	G	G	110697644	1	3	70	0	1	0	0	0	0	0	0	0	3319	406	14	5		5	CFI	4	110697644	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	4500937	110697644	80456632	158	78019											
LARP7	51574	broad.mit.edu	37	chr4	113578472	113578472	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaaacatataagattttctGaatatgattgaaaaaaaaaa	5	2	1	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113578472	T	T	113578472	4	4	70	1	0	0	0	0	0	1	0	0	8705	1291	45	3	1784	3	LARP7	4	113578472	Nonsense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2880828	113578472	77575804	159	78020											
NDST3	9348	broad.mit.edu	37	chr4	118979750	118979750	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattgaagtcaggaaaaGtgtgtgtgtgtgtgtgtgtg	16	1	1	2	rs71593977		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118979750	C	C	118979750	1	2	70	0	1	0	0	0	0	0	0	0	10352	1044	36	4		4	NDST3	4	118979750	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5401278	118979750	72174526	160	78021											
PDE5A	8654	broad.mit.edu	37	chr4	120498726	120498727	+	Intron	DNP	AC	GA	GA													taatccagcatataaacagaAccaatgacaaaaaccatatg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	120498727	GA	GA	120498726	1	3	70	0	1	0	0	0	0	0	0	0	11738	58	2	5		5	PDE5A	4	120498726	Intron	DNP	AC	TCGA-17-Z041-01A-01W-0746-08	1518976	120498726	70655550	161	78022											
FAT4	79633	broad.mit.edu	37	chr4	126241042	126241042	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggaaattacaaatactcAtcagtttgacagggagtctc	10	7	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126241042	G	G	126241042	3	3	70	1	0	0	0	0	1	0	0	0	5749	217	8	5	3478	5	FAT4	4	126241042	Missense_Mutation	SNP	A	TCGA-17-Z041-01A-01W-0746-08	5742316	126241042	64913234	162	78023											
C4orf29	80167	broad.mit.edu	37	chr4	128910977	128910977	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaatctgttattgcaagGtaagaatttttttgttcaaa	7	3	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128910977	T	T	128910977	5	4	70	1	0	0	0	0	0	0	1	0	2282	1275	44	3	289	3	C4orf29	4	128910977	Splice_Site	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2669935	128910977	62243299	163	78024											
DCLK2	166614	broad.mit.edu	37	chr4	151061517	151061517	+	Intron	DEL	A	-	-													gtatgtaataggcctcccccAgcaagcatggaggctcctcc					rs60163183		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151061517	-	-	151061517	6	5	70	0	1	1	0	1	0	0	0	0	4325	203	7	0		0	DCLK2	4	151061517	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	22150540	151061517	40092759	164	78025											
SPOCK3	50859	broad.mit.edu	37	chr4	167877371	167877372	+	Intron	INS	-	AC	AC													taatattaaaccacacacatINSacacacacacacacacacaa					rs142378645	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	167877372	AC	AC	167877371	6	5	70	0	1	1	1	0	0	0	0	0	15199	1421	49	0		0	SPOCK3	4	167877371	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	16815854	167877371	23276905	165	78026											
CYP4V2	285440	broad.mit.edu	37	chr4	187129209	187129209	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcccctgccttgatccacGtgttcttctttgaagggtat	8	12	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187129209	A	A	187129209	1	1	70	0	1	0	0	0	0	0	0	0	4225	1160	40	4		4	CYP4V2	4	187129209	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	19251838	187129209	4025067	166	78027											
FAT1	2195	broad.mit.edu	37	chr4	187584467	187584467	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatacctgttttaggatgtAttgaaaagaatccttgtgga	9	5	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187584467	T	T	187584467	3	4	70	1	0	0	0	0	1	0	0	0	5746	449	16	5	10300	5	FAT1	4	187584467	Missense_Mutation	SNP	A	TCGA-17-Z041-01A-01W-0746-08	455258	187584467	3569809	167	78028											
IRX1	79192	broad.mit.edu	37	chr5	3599657	3599657	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catggggagcgcgcagcaagGaccaggaagatggagcgctc	17	10	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3599657	C	C	3599657	3	2	70	1	0	0	0	0	1	0	0	0	7913	1174	41	4	601	4	IRX1	5	3599657	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08		3599657	177315603	168	78029											
MARCH11	441061	broad.mit.edu	37	chr5	16095592	16095607	+	Intron	DEL	AGGGAGGGAGGGAGGG	-	-													gggaaggaaggaaggaaggaAgggagggagggagggaggga					rs60755515		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16095607	-	-	16095592	6	5	70	0	1	1	0	1	0	0	0	0	9392	87	3	0		0	MARCH11	5	16095592	Intron	DEL	AGGGAGGGAGGGAGGG	TCGA-17-Z041-01A-01W-0746-08	12495935	16095592	164819668	169	78030											
MGC42105	167359	broad.mit.edu	37	chr5	43213383	43213387	+	Intron	DEL	TTTCC	-	-													ttgtttctttttctttcttgTttcctttccttttcttttct					rs141778896	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43213387	-	-	43213383	6	5	70	0	1	1	0	1	0	0	0	0	9645	1740	60	0		0	MGC42105	5	43213383	Intron	DEL	TTTCC	TCGA-17-Z041-01A-01W-0746-08	27117791	43213383	137701877	170	78031											
ACOT12	134526	broad.mit.edu	37	chr5	80639604	80639604	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtaatgatgagacttTtatatgaagagctccaaatc	7	5	0	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80639604	C	C	80639604	1	2	70	0	1	0	0	0	0	0	0	0	150	1856	64	5		5	ACOT12	5	80639604	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	37426221	80639604	100275656	171	78032											
SLC27A6	28965	broad.mit.edu	37	chr5	128368846	128368846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactattgaagcatcagttGgtggaagatggatttaatcc	10	5	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128368846	T	T	128368846	3	4	70	1	0	0	0	0	1	0	0	0	14644	1339	47	2	1769	2	SLC27A6	5	128368846	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	47729242	128368846	52546414	172	78033											
WNT8A	7478	broad.mit.edu	37	chr5	137423338	137423339	+	Intron	INS	-	AA	AA													ctggtgacagagcgagtctcINSaaaaaaaaaaaaaaaaaaaa					rs66902804		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	137423339	AA	AA	137423338	6	5	70	0	1	1	1	0	0	0	0	0	17523	841	29	0		0	WNT8A	5	137423338	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	9054492	137423338	43491922	173	78034											
SIL1	64374	broad.mit.edu	37	chr5	138473752	138473752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcccttaaactcctatcaCtcaagcttcctagctataca	3	14	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138473752	A	A	138473752	1	1	70	0	1	0	0	0	0	0	0	0	14434	580	20	3		3	SIL1	5	138473752	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1050414	138473752	42441508	174	78035											
PPP2R2B	5521	broad.mit.edu	37	chr5	146182944	146182944	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttaactttagtacaatttaGacacttttaaagataaaggt	6	4	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146182944	T	T	146182944	1	4	70	0	1	0	0	0	0	0	0	0	12486	957	33	3		3	PPP2R2B	5	146182944	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7709192	146182944	34732316	175	78036											
SGCD	6444	broad.mit.edu	37	chr5	156087503	156087503	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagctgattttctcctggtGaaacacaagcaaaacctctc	7	11	2	2	rs140991540	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156087503	A	A	156087503	1	1	70	0	1	0	0	0	0	0	0	0	14314	1305	45	4		4	SGCD	5	156087503	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	9904559	156087503	24827757	176	78037											
HAVCR1	26762	broad.mit.edu	37	chr5	156476003	156476003	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaacaaagtcaatggttatCaaggtttgaatgatcccagg	9	7	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156476003	G	G	156476003	1	3	70	0	1	0	0	0	0	0	0	0	7039	841	29	4		4	HAVCR1	5	156476003	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	388500	156476003	24439257	177	78038											
ODZ2	57451	broad.mit.edu	37	chr5	167576354	167576354	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagaggagggcagaatcctCacaaaatccagcttcagcaa	11	10	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167576354	T	T	167576354	1	4	70	0	1	0	0	0	0	0	0	0	10930	841	29	4		4	ODZ2	5	167576354	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	11100351	167576354	13338906	178	78039											
N4BP3	23138	broad.mit.edu	37	chr5	177548655	177548655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggctgtgcgcagcctgCaggagcaggcccctcgggag	18	13	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177548655	A	A	177548655	3	1	70	1	0	0	0	0	1	0	0	0	10207	711	25	3	1302	3	N4BP3	5	177548655	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	9972301	177548655	3366605	179	78040											
TXNDC5	81567	broad.mit.edu	37	chr6	7927577	7927577	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaaagatactcctcgagaAaagcaaccccaagacacata	5	13	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7927577	C	C	7927577	1	2	70	0	1	0	0	0	0	0	0	0	16925	29	1	5		5	TXNDC5	6	7927577	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08		7927577	163187490	180	78041											
HIST1H2AG	8969	broad.mit.edu	37	chr6	27100766	27100766	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccctaaccaacaacacgtCttctttttcgcgcccaatag	5	15	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27100766	T	T	27100766	1	4	70	0	1	0	0	0	0	0	0	0	7200	928	32	4		4	HIST1H2AG	6	27100766	5'Flank	SNP	C	TCGA-17-Z041-01A-01W-0746-08	19173189	27100766	144014301	181	78042											
TRIM31	11074	broad.mit.edu	37	chr6	30072016	30072016	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaaaaacaaaaacaagcAccctgccatcatcaatcaga	3	11	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30072016	C	C	30072016	1	2	70	0	1	0	0	0	0	0	0	0	16629	174	6	5		5	TRIM31	6	30072016	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	2971250	30072016	141043051	182	78043											
C6orf134	79969	broad.mit.edu	37	chr6	30608890	30608893	+	Intron	DEL	ACAT	-	-													attccccatcccatatacacAcatacacacacacacacaca					rs3130038		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30608893	-	-	30608890	6	5	70	0	1	1	0	1	0	0	0	0	2353	174	6	0		0	C6orf134	6	30608890	Intron	DEL	ACAT	TCGA-17-Z041-01A-01W-0746-08	536874	30608890	140506177	183	78044											
LRFN2	57497	broad.mit.edu	37	chr6	40530567	40530570	+	Intron	DEL	CACT	-	-													tgagcgtgcttatgtgcgtgCactcactcacacacacacac					rs112751953		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40530570	-	-	40530567	6	5	70	0	1	1	0	1	0	0	0	0	9025	725	25	0		0	LRFN2	6	40530567	Intron	DEL	CACT	TCGA-17-Z041-01A-01W-0746-08	9921677	40530567	130584500	184	78045											
CAPN11	11131	broad.mit.edu	37	chr6	44147251	44147252	+	Intron	DEL	AC	-	-													cccttaatacccctccaacaAcacacacacacagacacaca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44147252	-	-	44147251	6	5	70	0	1	1	0	1	0	0	0	0	2650	58	2	0		0	CAPN11	6	44147251	Intron	DEL	AC	TCGA-17-Z041-01A-01W-0746-08	3616684	44147251	126967816	185	78046											
DST	667	broad.mit.edu	37	chr6	56346986	56346987	+	Intron	DEL	CA	-	-													aattcctctgcctaagagttCacacacacacacaccccaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56346987	-	-	56346986	6	5	70	0	1	1	0	1	0	0	0	0	4823	841	29	0		0	DST	6	56346986	Intron	DEL	CA	TCGA-17-Z041-01A-01W-0746-08	12199735	56346986	114768081	186	78047											
PRIM2	5558	broad.mit.edu	37	chr6	57271989	57271989	+	Intron	DEL	A	-	-													ataatgttcaatctttgaggAaaaaatgaatataccttttt					rs11352941		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57271989	-	-	57271989	6	5	70	0	1	1	0	1	0	0	0	0	12597	261	9	0		0	PRIM2	6	57271989	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	925003	57271989	113843078	187	78048											
PRIM2	5558	broad.mit.edu	37	chr6	57284785	57284786	+	Intron	INS	-	T	T													aaacagaatcttcatcgagcINSttttgtgtttggtggtggca					rs11442279		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57284786	T	T	57284785	6	5	70	0	1	1	1	0	0	0	0	0	12597	812	28	0		0	PRIM2	6	57284785	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	12796	57284785	113830282	188	78049											
PRIM2	5558	broad.mit.edu	37	chr6	57306787	57306788	+	Intron	INS	-	A	A													tctgatataagcaggaaaagINSaaaaaaaaataggacataat					rs146073138	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57306788	A	A	57306787	6	5	70	0	1	1	1	0	0	0	0	0	12597	957	33	0		0	PRIM2	6	57306787	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	22002	57306787	113808280	189	78050											
PRIM2	5558	broad.mit.edu	37	chr6	57398118	57398119	+	Intron	INS	-	T	T													cttaacttaaaactctactgINSttttttcttgtagctttcta					rs147643173		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398119	T	T	57398118	6	5	70	0	1	1	1	0	0	0	0	0	12597	1392	48	0		0	PRIM2	6	57398118	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	91331	57398118	113716949	190	78051											
PRIM2	5558	broad.mit.edu	37	chr6	57440798	57440799	+	Intron	INS	-	A	A													gccaaggacctgaacaactcINSacgatcagaaccttctaccc					rs146617443		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57440799	A	A	57440798	6	5	70	0	1	1	1	0	0	0	0	0	12597	841	29	0		0	PRIM2	6	57440798	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	42680	57440798	113674269	191	78052											
PRIM2	5558	broad.mit.edu	37	chr6	57454089	57454089	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcttgatttgacagtgTaattgatagatcctaggaag	10	4	1	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57454089	C	C	57454089	1	2	70	0	1	0	0	0	0	0	0	0	12597	1653	57	5		5	PRIM2	6	57454089	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	13291	57454089	113660978	192	78053											
PRIM2	5558	broad.mit.edu	37	chr6	57505054	57505054	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaatgctgagagattttGtcactactaggcctgcctta	9	9	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57505054	A	A	57505054	1	1	70	0	1	0	0	0	0	0	0	0	12597	1392	48	4		4	PRIM2	6	57505054	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	50965	57505054	113610013	193	78054											
EYS	346007	broad.mit.edu	37	chr6	64658386	64658386	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggctggtgacaaacaccAcaagggtgtatctccccaac	10	13	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64658386	T	T	64658386	1	4	70	0	1	0	0	0	0	0	0	0	5375	174	6	5		5	EYS	6	64658386	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	7153332	64658386	106456681	194	78055											
EYS	346007	broad.mit.edu	37	chr6	66104630	66104630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtgtggttcttttcccCcaagcagctctgtacacttc	7	14	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66104630	A	A	66104630	1	1	70	0	1	0	0	0	0	0	0	0	5375	638	22	2		2	EYS	6	66104630	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1446244	66104630	105010437	195	78056											
RIMS1	22999	broad.mit.edu	37	chr6	72710253	72710253	+	Intron	DEL	G	-	-													ttgcaaataaacaagtggatGagcctttccctaatgcatct							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72710253	-	-	72710253	6	5	70	0	1	1	0	1	0	0	0	0	13478	1305	45	0		0	RIMS1	6	72710253	Intron	DEL	G	TCGA-17-Z041-01A-01W-0746-08	6605623	72710253	98404814	196	78057											
KCNQ5	56479	broad.mit.edu	37	chr6	73557255	73557256	+	Intron	INS	-	T	T													agaagtggaagagtaaaggaINStttaattgagaattggcctt					rs149066572	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73557256	T	T	73557255	6	5	70	0	1	1	1	0	0	0	0	0	8156	348	12	0		0	KCNQ5	6	73557255	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	847002	73557255	97557812	197	78058											
HTR1B	3351	broad.mit.edu	37	chr6	78172846	78172846	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaagcaggtcggtgaccGccagagaggcgatcaggtag	15	10	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78172846	A	A	78172846	3	1	70	1	0	0	0	0	1	0	0	0	7507	1087	38	4	901	4	HTR1B	6	78172846	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4615591	78172846	92942221	198	78059											
RWDD2A	112611	broad.mit.edu	37	chr6	83905766	83905766	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtaccccaattggaagcaCatttcctgtaagcatgctga	9	10	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83905766	T	T	83905766	2	4	70	1	0	0	0	0	0	0	0	1	13866	477	17	4		4	RWDD2A	6	83905766	Silent	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5732920	83905766	87209301	199	78060											
MRAP2	112609	broad.mit.edu	37	chr6	84791539	84791540	+	Intron	INS	-	AATG	AATG													taacaagactccatcttaaaINSaatgaatgaatgaatgaatg					rs111440830		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AATG	84791540	AATG	AATG	84791539	6	5	70	0	1	1	1	0	0	0	0	0	9848	29	1	0		0	MRAP2	6	84791539	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	885773	84791539	86323528	200	78061											
ZNF292	23036	broad.mit.edu	37	chr6	87890157	87890157	+	Intron	DEL	C	-	-													atgtgccaagagcagacagaCccttgtctagctcacagccc					rs11329320		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87890157	-	-	87890157	6	5	70	0	1	1	0	1	0	0	0	0	17952	522	18	0		0	ZNF292	6	87890157	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	3098618	87890157	83224910	201	78062											
BACH2	60468	broad.mit.edu	37	chr6	90843945	90843945	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgactttttaatgatcGccattctaactggtgtgaga	8	8	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90843945	A	A	90843945	1	1	70	0	1	0	0	0	0	0	0	0	1289	1102	38	4		4	BACH2	6	90843945	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2953788	90843945	80271122	202	78063											
GRIK2	2898	broad.mit.edu	37	chr6	102498678	102498678	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagaaagggagggagggaGgacagaaggaaggaaggaag	23	1	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102498678	A	A	102498678	1	1	70	0	1	0	0	0	0	0	0	0	6840	1015	35	4		4	GRIK2	6	102498678	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	11654733	102498678	68616389	203	78064											
LIN28B	389421	broad.mit.edu	37	chr6	105501922	105501925	+	Intron	DEL	TGTT	-	-													agacactgcacccagcctacTgtttgtttgtttccttttaa					rs141591930		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105501925	-	-	105501922	6	5	70	0	1	1	0	1	0	0	0	0	8879	1595	55	0		0	LIN28B	6	105501922	Intron	DEL	TGTT	TCGA-17-Z041-01A-01W-0746-08	3003244	105501922	65613145	204	78065											
PREP	5550	broad.mit.edu	37	chr6	105829732	105829732	+	Intron	DEL	A	-	-													tgtgcacagaaaaatctgttAcaagggtagctgtcatgtga					rs60388324		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105829732	-	-	105829732	6	5	70	0	1	1	0	1	0	0	0	0	12580	406	14	0		0	PREP	6	105829732	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	327810	105829732	65285335	205	78066											
SOBP	55084	broad.mit.edu	37	chr6	107956788	107956788	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaccgtgtgtgttttatAttgcacacggtgtggtcacg	11	7	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107956788	G	G	107956788	1	3	70	0	1	0	0	0	0	0	0	0	15026	464	16	5		5	SOBP	6	107956788	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	2127056	107956788	63158279	206	78067											
SLC16A10	117247	broad.mit.edu	37	chr6	111529912	111529913	+	Intron	DEL	TC	-	-													tgaagtgtccagaataggaaTctctgtctctttccatagag							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111529913	-	-	111529912	6	5	70	0	1	1	0	1	0	0	0	0	14516	1450	50	0		0	SLC16A10	6	111529912	Intron	DEL	TC	TCGA-17-Z041-01A-01W-0746-08	3573124	111529912	59585155	207	78068											
PKIB	5570	broad.mit.edu	37	chr6	122999036	122999039	+	Intron	DEL	CTTT	-	-													cttccttccttccttccttcCtttctttctttctttcctct					rs7752574	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122999039	-	-	122999036	6	5	70	0	1	1	0	1	0	0	0	0	12069	696	24	0		0	PKIB	6	122999036	Intron	DEL	CTTT	TCGA-17-Z041-01A-01W-0746-08	11469124	122999036	48116031	208	78069											
TRDN	10345	broad.mit.edu	37	chr6	123715106	123715106	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actttgcatttgttgagcatCtgaatttgaaaatctcagaa	7	6	2	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123715106	A	A	123715106	1	1	70	0	1	0	0	0	0	0	0	0	16592	928	32	3		3	TRDN	6	123715106	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	716070	123715106	47399961	209	78070											
NKAIN2	154215	broad.mit.edu	37	chr6	124216344	124216345	+	Intron	DEL	AC	-	-													tctctgtctctctcacacagAcacacacacacacacacaag							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124216345	-	-	124216344	6	5	70	0	1	1	0	1	0	0	0	0	10531	290	10	0		0	NKAIN2	6	124216344	Intron	DEL	AC	TCGA-17-Z041-01A-01W-0746-08	501238	124216344	46898723	210	78071											
HEY2	23493	broad.mit.edu	37	chr6	126073183	126073183	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcgtcgggatcggataAataacagtttatctgagttg	12	5	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126073183	C	C	126073183	3	2	70	1	0	0	0	0	1	0	0	0	7146	14	1	5	203	5	HEY2	6	126073183	Missense_Mutation	SNP	A	TCGA-17-Z041-01A-01W-0746-08	1856839	126073183	45041884	211	78072											
LAMA2	3908	broad.mit.edu	37	chr6	129254376	129254377	+	Intron	DEL	TG	-	-													tccctctctccctctctttcTgtgtgtgtgtgtgtgtgtgt					rs67934141		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129254377	-	-	129254376	6	5	70	0	1	1	0	1	0	0	0	0	8678	1595	55	0		0	LAMA2	6	129254376	Intron	DEL	TG	TCGA-17-Z041-01A-01W-0746-08	3181193	129254376	41860691	212	78073											
LAMA2	3908	broad.mit.edu	37	chr6	129278747	129278748	+	Intron	INS	-	G	G													tgtgaggagtgctttttttaINSgggggggaaggggagaaaca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129278748	G	G	129278747	6	5	70	0	1	1	1	0	0	0	0	0	8678	435	15	0		0	LAMA2	6	129278747	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	24371	129278747	41836320	213	78074											
LAMA2	3908	broad.mit.edu	37	chr6	129374681	129374682	+	Intron	INS	-	AAGG	AAGG													gagttcaggtaaatggagtcINSaaggcaataaagggaaacag					rs150991457	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAGG	129374682	AAGG	AAGG	129374681	6	5	70	0	1	1	1	0	0	0	0	0	8678	841	29	0		0	LAMA2	6	129374681	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	95934	129374681	41740386	214	78075											
L3MBTL3	84456	broad.mit.edu	37	chr6	130389708	130389708	+	Intron	DEL	A	-	-													tcttatcttaattaaagtttAaaattagcttaaaatcttca					rs67334159		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130389708	-	-	130389708	6	5	70	0	1	1	0	1	0	0	0	0	8665	377	13	0		0	L3MBTL3	6	130389708	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	1015027	130389708	40725359	215	78076											
EPB41L2	2037	broad.mit.edu	37	chr6	131294686	131294687	+	Intron	INS	-	C	C													aaggaaaataaatcttgaggINScccccaagtcactaagctaa					rs145182996	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131294687	C	C	131294686	6	5	70	0	1	1	1	0	0	0	0	0	5195	1218	42	0		0	EPB41L2	6	131294686	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	904978	131294686	39820381	216	78077											
EPB41L2	2037	broad.mit.edu	37	chr6	131310231	131310234	+	Intron	DEL	AAAC	-	-													aaagtgagactctgtctcaaAaacaaacaaacaaacaaaga					rs112171986		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131310234	-	-	131310231	6	5	70	0	1	1	0	1	0	0	0	0	5195	29	1	0		0	EPB41L2	6	131310231	Intron	DEL	AAAC	TCGA-17-Z041-01A-01W-0746-08	15545	131310231	39804836	217	78078											
ENPP1	5167	broad.mit.edu	37	chr6	132172515	132172515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcatggctattggccaactAtattagctgaaaaaaataat	7	6	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132172515	G	G	132172515	1	3	70	0	1	0	0	0	0	0	0	0	5171	464	16	5		5	ENPP1	6	132172515	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	862284	132172515	38942552	218	78079											
HECA	51696	broad.mit.edu	37	chr6	139484840	139484840	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgtttttcagtaaattctGagttcatttcttaccaatct	4	8	5	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139484840	T	T	139484840	1	4	70	0	1	0	0	0	0	0	0	0	7105	1305	45	3		3	HECA	6	139484840	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7312325	139484840	31630227	219	78080											
C6orf72	116254	broad.mit.edu	37	chr6	149901549	149901549	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgctttagctccttataCgtgtcttagtttatagttct	6	8	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149901549	T	T	149901549	1	4	70	0	1	0	0	0	0	0	0	0	2395	551	19	4		4	C6orf72	6	149901549	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	10416709	149901549	21213518	220	78081											
MTHFD1L	25902	broad.mit.edu	37	chr6	151363066	151363066	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagatttcgcttctaaataTttacttttactttccatgtt	3	9	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151363066	G	G	151363066	1	3	70	0	1	0	0	0	0	0	0	0	10022	1508	52	5		5	MTHFD1L	6	151363066	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1461517	151363066	19752001	221	78082											
ESR1	2099	broad.mit.edu	37	chr6	152364594	152364594	+	Intron	DEL	C	-	-													gcagttcttttggagtgtagCgcacctccttgtgggtcaca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152364594	-	-	152364594	6	5	70	0	1	1	0	1	0	0	0	0	5298	783	27	0		0	ESR1	6	152364594	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	1001528	152364594	18750473	222	78083											
C6orf35	729515	broad.mit.edu	37	chr6	157735352	157735352	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcacctggcctcatcataGtgtcccagtgtgcactcacc	7	16	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157735352	C	C	157735352	1	2	70	0	1	0	0	0	0	0	0	0	2386	1044	36	4		4	C6orf35	6	157735352	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5370758	157735352	13379715	223	78084											
FAM120B	84498	broad.mit.edu	37	chr6	170627589	170627590	+	In_Frame_Ins	INS	-	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC													agttcccgtgtatacagattINSctgaacccaggcaagaagtt					rs137929046		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	170627590	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	170627589	7	5	70	1	0	1	1	0	0	0	0	0	5463	1783	62	0	1113	0	FAM120B	6	170627589	In_Frame_Ins	INS	-	TCGA-17-Z041-01A-01W-0746-08	12892237	170627589	487478	224	78085											
SDK1	221935	broad.mit.edu	37	chr7	3392813	3392814	+	Intron	INS	-	T	T													tagataggtaagtggtgtaaINSgtaatggcatggaaagatcc					rs145606589	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3392814	T	T	3392813	6	5	70	0	1	1	1	0	0	0	0	0	14081	87	3	0		0	SDK1	7	3392813	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08		3392813	155745850	225	78086											
C1GALT1	56913	broad.mit.edu	37	chr7	7278574	7278574	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtttagaaattttattActatgtcaatacttggactg	7	4	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7278574	T	T	7278574	1	4	70	0	1	0	0	0	0	0	0	0	1972	406	14	5		5	C1GALT1	7	7278574	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	3885761	7278574	151860089	226	78087											
PHF14	9678	broad.mit.edu	37	chr7	11022138	11022138	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaacaacttaaaaattcTgcagaggaagaagtactatc	8	6	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11022138	G	G	11022138	2	3	70	1	0	0	0	0	0	0	0	1	11920	1567	55	5		5	PHF14	7	11022138	Silent	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3743564	11022138	148116525	227	78088											
HDAC9	9734	broad.mit.edu	37	chr7	18217594	18217595	+	Intron	INS	-	T	T													catgaatcatatcccttttcINStttttgcttattcatttgtt					rs142064723	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18217595	T	T	18217594	6	5	70	0	1	1	1	0	0	0	0	0	7081	928	32	0		0	HDAC9	7	18217594	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	7195456	18217594	140921069	228	78089											
OSBPL3	26031	broad.mit.edu	37	chr7	24981905	24981905	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaaacataggtattctttTatacaactaatataatgaaa	3	5	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24981905	C	C	24981905	1	2	70	0	1	0	0	0	0	0	0	0	11373	1769	61	5		5	OSBPL3	7	24981905	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	6764311	24981905	134156758	229	78090											
CCDC129	223075	broad.mit.edu	37	chr7	31613984	31613985	+	Intron	DNP	GC	AA	AA													agcagtccctgagtgggggtGccagatagtcctttaagtaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31613985	AA	AA	31613984	1	1	70	0	1	0	0	0	0	0	0	0	2790	1334	46	4		4	CCDC129	7	31613984	Intron	DNP	GC	TCGA-17-Z041-01A-01W-0746-08	6632079	31613984	127524679	230	78091											
PDE1C	5137	broad.mit.edu	37	chr7	32063361	32063361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagagtaacagttgtcaaGgcttagggatggaggagagg	16	4	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32063361	T	T	32063361	1	4	70	0	1	0	0	0	0	0	0	0	11729	1015	35	2		2	PDE1C	7	32063361	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	449377	32063361	127075302	231	78092											
PDE1C	5137	broad.mit.edu	37	chr7	32099960	32099960	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttatcaaaactgactcctGgcagaaagcagctgctggtc	9	11	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32099960	A	A	32099960	1	1	70	0	1	0	0	0	0	0	0	0	11729	1363	47	4		4	PDE1C	7	32099960	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	36599	32099960	127038703	232	78093											
PDE1C	5137	broad.mit.edu	37	chr7	32288926	32288926	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtctgggagaactacttgGtggtgttttttccttaaggt	12	5	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32288926	C	C	32288926	1	2	70	0	1	0	0	0	0	0	0	0	11729	1276	44	4		4	PDE1C	7	32288926	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	188966	32288926	126849737	233	78094											
BMPER	168667	broad.mit.edu	37	chr7	33958671	33958671	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccatgggtgcacgtgtgTgggggggaattgttaaaaac	15	7	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33958671	G	G	33958671	1	3	70	0	1	0	0	0	0	0	0	0	1474	1711	59	5		5	BMPER	7	33958671	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1669745	33958671	125179992	234	78095											
NPSR1	387129	broad.mit.edu	37	chr7	34711109	34711109	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaatgaacccaagcaagcGaggcttgcatgacccagaga	11	10	0	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34711109	T	T	34711109	1	4	70	0	1	0	0	0	0	0	0	0	10695	1073	37	3		3	NPSR1	7	34711109	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	752438	34711109	124427554	235	78096											
NPSR1	387129	broad.mit.edu	37	chr7	34775047	34775049	+	Intron	DEL	CCT	-	-													ttatcctggagccctcttccCctcctctgttttgctgacct					rs75965647		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34775049	-	-	34775047	6	5	70	0	1	1	0	1	0	0	0	0	10695	638	22	0		0	NPSR1	7	34775047	Intron	DEL	CCT	TCGA-17-Z041-01A-01W-0746-08	63938	34775047	124363616	236	78097											
NPSR1	387129	broad.mit.edu	37	chr7	34899250	34899250	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagtgtaactcaaacatcAtcataactatctgacagact	5	9	4	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34899250	G	G	34899250	1	3	70	0	1	0	0	0	0	0	0	0	10695	232	8	5		5	NPSR1	7	34899250	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	124203	34899250	124239413	237	78098											
TXNDC3	51314	broad.mit.edu	37	chr7	37889102	37889102	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatacaatagtccttccatGacattagcttctctctcccc	4	15	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37889102	T	T	37889102	1	4	70	0	1	0	0	0	0	0	0	0	16924	1305	45	3		3	TXNDC3	7	37889102	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2989852	37889102	121249561	238	78099											
AMPH	273	broad.mit.edu	37	chr7	38588495	38588496	+	Intron	DEL	GT	-	-													ttgagttgtctacgtggccaGtgccatgttgtctgcttttt					rs57068643		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38588496	-	-	38588495	6	5	70	0	1	1	0	1	0	0	0	0	588	1044	36	0		0	AMPH	7	38588495	Intron	DEL	GT	TCGA-17-Z041-01A-01W-0746-08	699393	38588495	120550168	239	78100											
POU6F2	11281	broad.mit.edu	37	chr7	39364104	39364104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgactacaatgagctgaGccccctgatgatttaggaca	10	9	0	5			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39364104	T	T	39364104	1	4	70	0	1	0	0	0	0	0	0	0	12381	986	34	3		3	POU6F2	7	39364104	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	775609	39364104	119774559	240	78101											
C7orf10	79783	broad.mit.edu	37	chr7	40807151	40807151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcaggccaactggtgtgGgtcagagtggtggcagagga	20	6	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40807151	T	T	40807151	1	4	70	0	1	0	0	0	0	0	0	0	2401	1247	43	2		2	C7orf10	7	40807151	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1443047	40807151	118331512	241	78102											
SUN3	256979	broad.mit.edu	37	chr7	48034392	48034393	+	Intron	INS	-	GTG	GTG													ggatgatgatggtgaccattINSgtgatcattgtggtgatgat					rs141709193	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTG	48034393	GTG	GTG	48034392	6	5	70	0	1	1	1	0	0	0	0	0	15511	1827	63	0		0	SUN3	7	48034392	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	7227241	48034392	111104271	242	78103											
VSTM2A	222008	broad.mit.edu	37	chr7	54610544	54610544	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatacatttgcttgcgtgtGtgtgtgtttcctacactcaa	8	8	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54610544	A	A	54610544	1	1	70	0	1	0	0	0	0	0	0	0	17356	1392	48	4		4	VSTM2A	7	54610544	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	6576152	54610544	104528119	243	78104											
ZNF735	730291	broad.mit.edu	37	chr7	63667719	63667719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcctcgcagtcagctccGgagtctgaggacccaaatcc	9	15	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63667719	T	T	63667719	1	4	70	0	1	0	0	0	0	0	0	0	18253	1131	39	1		1	ZNF735	7	63667719	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	9057175	63667719	95470944	244	78105											
ABHD11	83451	broad.mit.edu	37	chr7	73152067	73152067	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcatccaccgtcagcaccTggggagtggggtgagacggg	18	10	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73152067	G	G	73152067	5	3	70	1	0	0	0	0	0	0	1	0	75	1594	55	5	676	5	ABHD11	7	73152067	Splice_Site	SNP	T	TCGA-17-Z041-01A-01W-0746-08	9484348	73152067	85986596	245	78106											
CD36	948	broad.mit.edu	37	chr7	80196740	80196740	+	Intron	DEL	T	-	-													tggacttgggctttagagtcTtttttatcacctgtatctac					rs71518993		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80196740	-	-	80196740	6	5	70	0	1	1	0	1	0	0	0	0	3037	1624	56	0		0	CD36	7	80196740	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	7044673	80196740	78941923	246	78107											
SEMA3E	9723	broad.mit.edu	37	chr7	83023519	83023519	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgtaataagttcatattTaagcacatgtactaatgttc	5	6	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83023519	C	C	83023519	1	2	70	0	1	0	0	0	0	0	0	0	14141	1769	61	5		5	SEMA3E	7	83023519	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	2826779	83023519	76115144	247	78108											
ABCB4	5244	broad.mit.edu	37	chr7	87079176	87079176	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgcttataatttatgcgaGaagggttaatattaggaaag	12	2	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87079176	T	T	87079176	1	4	70	0	1	0	0	0	0	0	0	0	43	957	33	3		3	ABCB4	7	87079176	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4055657	87079176	72059487	248	78109											
ABCB4	5244	broad.mit.edu	37	chr7	87081222	87081222	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcactgactgcaagccTctttcagagtcttagcctct	7	12	5	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87081222	C	C	87081222	1	2	70	0	1	0	0	0	0	0	0	0	43	1566	54	5		5	ABCB4	7	87081222	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	2046	87081222	72057441	249	78110											
ADAM22	53616	broad.mit.edu	37	chr7	87792441	87792441	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcttcctgtggcttctttCaactttagtacttgcttgag	8	9	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87792441	T	T	87792441	2	4	70	1	0	0	0	0	0	0	0	1	244	825	29	4		4	ADAM22	7	87792441	Silent	SNP	C	TCGA-17-Z041-01A-01W-0746-08	711219	87792441	71346222	250	78111											
ZNF804B	219578	broad.mit.edu	37	chr7	88419731	88419731	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagctatttaccctgatgctCtccctccccttgcacccctg	5	18	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88419731	A	A	88419731	1	1	70	0	1	0	0	0	0	0	0	0	18300	928	32	3		3	ZNF804B	7	88419731	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	627290	88419731	70718932	251	78112											
DYNC1I1	1780	broad.mit.edu	37	chr7	95591909	95591910	+	Intron	INS	-	A	A													acacgttatagccttttaccINSctgacaaagcagctctgtat					rs149038526	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95591910	A	A	95591909	6	5	70	0	1	1	1	0	0	0	0	0	4882	638	22	0		0	DYNC1I1	7	95591909	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	7172178	95591909	63546754	252	78113											
SLC25A13	10165	broad.mit.edu	37	chr7	95913129	95913129	+	Intron	DEL	T	-	-													gacttcatggcaaataggtgTttaaaaaaaaaaaaaaaaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95913129	-	-	95913129	6	5	70	0	1	1	0	1	0	0	0	0	14589	1740	60	0		0	SLC25A13	7	95913129	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	321220	95913129	63225534	253	78114											
ASNS	440	broad.mit.edu	37	chr7	97498484	97498484	+	5'UTR	DEL	T	-	-													cacatggtgcaatgaagctaTaagctttctatggagagaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97498484	-	-	97498484	6	5	70	0	1	1	0	1	0	0	0	0	1052	1421	49	0		0	ASNS	7	97498484	5'UTR	DEL	T	TCGA-17-Z041-01A-01W-0746-08	1585355	97498484	61640179	254	78115											
MYL10	93408	broad.mit.edu	37	chr7	101265345	101265346	+	Intron	INS	-	C	C													ccccctgccattccctgctgINScccctccaggactccaggag							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101265346	C	C	101265345	6	5	70	0	1	1	1	0	0	0	0	0	10138	1334	46	0		0	MYL10	7	101265345	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3766861	101265345	57873318	255	78116											
CUX1	1523	broad.mit.edu	37	chr7	101740611	101740611	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggggcctgtttgctggccGagtggggtgatggctgtttt	19	6	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101740611	T	T	101740611	1	4	70	0	1	0	0	0	0	0	0	0	4097	1073	37	3		3	CUX1	7	101740611	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	475266	101740611	57398052	256	78117											
DOCK4	9732	broad.mit.edu	37	chr7	111789636	111789638	+	Intron	DEL	AAG	-	-													ccttattttacagaaaataaAagaagactatcaaagaagag					rs72438942		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111789638	-	-	111789636	6	5	70	0	1	1	0	1	0	0	0	0	4729	29	1	0		0	DOCK4	7	111789636	Intron	DEL	AAG	TCGA-17-Z041-01A-01W-0746-08	10049025	111789636	47349027	257	78118											
TSPAN12	23554	broad.mit.edu	37	chr7	120433221	120433221	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaagttttccaaatatgTacacttaatcattctgctga	4	8	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120433221	C	C	120433221	1	2	70	0	1	0	0	0	0	0	0	0	16761	1653	57	5		5	TSPAN12	7	120433221	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	8643585	120433221	38705442	258	78119											
GRM8	2918	broad.mit.edu	37	chr7	126353856	126353856	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgggtggggatggatGtgttagtttaattgtggtaa	16	2	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126353856	C	C	126353856	1	2	70	0	1	0	0	0	0	0	0	0	6869	1392	48	4		4	GRM8	7	126353856	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5920635	126353856	32784807	259	78120											
GRM8	2918	broad.mit.edu	37	chr7	126690594	126690594	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagtgtcatcttttcaaggaGagagaaacagatgccctttg	11	7	3	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126690594	C	C	126690594	1	2	70	0	1	0	0	0	0	0	0	0	6869	957	33	4		4	GRM8	7	126690594	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	336738	126690594	32448069	260	78121											
COPG2	26958	broad.mit.edu	37	chr7	130292342	130292342	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgatatactgtaaagacTctagaactcatggagtttct	7	6	3	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130292342	C	C	130292342	1	2	70	0	1	0	0	0	0	0	0	0	3764	1566	54	5		5	COPG2	7	130292342	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3601748	130292342	28846321	261	78122											
PLXNA4	91584	broad.mit.edu	37	chr7	131895890	131895890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgtccactcgcagcaGctgggggcagtcctggggac	15	12	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131895890	T	T	131895890	3	4	70	1	0	0	0	0	1	0	0	0	12217	962	34	3	3666	3	PLXNA4	7	131895890	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1603548	131895890	27242773	262	78123											
EXOC4	60412	broad.mit.edu	37	chr7	133015235	133015235	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctggggtttggaaataaAaactgcagctagctcagtgt	11	8	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133015235	G	G	133015235	1	3	70	0	1	0	0	0	0	0	0	0	5348	29	1	5		5	EXOC4	7	133015235	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	1119345	133015235	26123428	263	78124											
EXOC4	60412	broad.mit.edu	37	chr7	133702329	133702329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccgtttctgaccatgccGcttttttctgatctcccttt	6	14	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133702329	T	T	133702329	1	4	70	0	1	0	0	0	0	0	0	0	5348	1102	38	3		3	EXOC4	7	133702329	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	687094	133702329	25436334	264	78125											
EXOC4	60412	broad.mit.edu	37	chr7	133704600	133704600	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttgggtgtctttcccccttGatttccactgagctctgatt	9	11	2	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133704600	T	T	133704600	1	4	70	0	1	0	0	0	0	0	0	0	5348	1305	45	3		3	EXOC4	7	133704600	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2271	133704600	25434063	265	78126											
DGKI	9162	broad.mit.edu	37	chr7	137472592	137472592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactattatgctatgaggaCacaaaagcataagaatgaca	7	7	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137472592	A	A	137472592	1	1	70	0	1	0	0	0	0	0	0	0	4511	493	17	3		3	DGKI	7	137472592	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3767992	137472592	21666071	266	78127											
MGAM	8972	broad.mit.edu	37	chr7	141796308	141796308	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgagctggtgggggtcctAagacatggtttcttattcta	12	8	2	2	rs139455340	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141796308	G	G	141796308	1	3	70	0	1	0	0	0	0	0	0	0	9634	377	13	5		5	MGAM	7	141796308	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	4323716	141796308	17342355	267	78128											
CNTNAP2	26047	broad.mit.edu	37	chr7	146237603	146237603	+	Intron	DEL	A	-	-													tcttcttcagaagatccaatAaaaaggctatgcaagactgc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	146237603	-	-	146237603	6	5	70	0	1	1	0	1	0	0	0	0	3679	377	13	0		0	CNTNAP2	7	146237603	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	4441295	146237603	12901060	268	78129											
CNTNAP2	26047	broad.mit.edu	37	chr7	147597043	147597043	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgtcagggtcttcctgctCtctgcttccattctttccac	6	14	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147597043	G	G	147597043	1	3	70	0	1	0	0	0	0	0	0	0	3679	928	32	4		4	CNTNAP2	7	147597043	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1359440	147597043	11541620	269	78130											
MLL3	58508	broad.mit.edu	37	chr7	151937557	151937557	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgagcctagatcctaaatGgtattatctacaatgagggc	9	8	1	3	rs111989827	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151937557	A	A	151937557	1	1	70	0	1	0	0	0	0	0	0	0	9715	1363	47	4		4	MLL3	7	151937557	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4340514	151937557	7201106	270	78131											
DPP6	1804	broad.mit.edu	37	chr7	153647681	153647681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggaaggaacgcctgaaGtggaaataaggaaagattgg	14	6	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153647681	T	T	153647681	1	4	70	0	1	0	0	0	0	0	0	0	4770	1044	36	3		3	DPP6	7	153647681	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1710124	153647681	5490982	271	78132											
DPP6	1804	broad.mit.edu	37	chr7	154426456	154426456	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgccatggccttgatAgggttattttaattgctctc	8	9	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154426456	G	G	154426456	1	3	70	0	1	0	0	0	0	0	0	0	4770	435	15	5		5	DPP6	7	154426456	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	778775	154426456	4712207	272	78133											
DPP6	1804	broad.mit.edu	37	chr7	154531383	154531384	+	Intron	INS	-	TCC	TCC													agagccatcagaaccattagINStcatcatctcttcaatgcga					rs79074380		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCC	154531384	TCC	TCC	154531383	6	5	70	0	1	1	1	0	0	0	0	0	4770	1044	36	0		0	DPP6	7	154531383	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	104927	154531383	4607280	273	78134											
PTPRN2	5799	broad.mit.edu	37	chr7	157834968	157834968	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagaccaggagctcatccGactgccccatcgtgcttgac	10	15	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157834968	A	A	157834968	1	1	70	0	1	0	0	0	0	0	0	0	12916	1073	37	4		4	PTPRN2	7	157834968	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3303585	157834968	1303695	274	78135											
CSMD1	64478	broad.mit.edu	37	chr8	2855761	2855761	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaacaggtcatcactttcCcttgggattattaataagaa	7	7	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2855761	T	T	2855761	1	4	70	0	1	0	0	0	0	0	0	0	3978	638	22	4		4	CSMD1	8	2855761	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08		2855761	143508261	275	78136											
CSMD1	64478	broad.mit.edu	37	chr8	3265259	3265259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatacatttgtttttaaGttttcaggataacactataa	6	4	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3265259	T	T	3265259	1	4	70	0	1	0	0	0	0	0	0	0	3978	1044	36	3		3	CSMD1	8	3265259	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	409498	3265259	143098763	276	78137											
CSMD1	64478	broad.mit.edu	37	chr8	4470320	4470320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaccagtaacaccagcCtctgtctcttcctggctttg	7	15	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4470320	A	A	4470320	1	1	70	0	1	0	0	0	0	0	0	0	3978	696	24	2		2	CSMD1	8	4470320	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1205061	4470320	141893702	277	78138											
TUSC3	7991	broad.mit.edu	37	chr8	15605968	15605968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagtaccacggctatcCttataggtaatatctttata	5	9	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15605968	A	A	15605968	3	1	70	1	0	0	0	0	1	0	0	0	16904	681	24	2	1056	2	TUSC3	8	15605968	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	11135648	15605968	130758054	278	78139											
PEBP4	157310	broad.mit.edu	37	chr8	22770891	22770891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcacctccctcctctgtGcacctttacttcttctgcaa	4	18	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22770891	T	T	22770891	1	4	70	0	1	0	0	0	0	0	0	0	11808	1334	46	3		3	PEBP4	8	22770891	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7164923	22770891	123593131	279	78140											
TNFRSF10A	8797	broad.mit.edu	37	chr8	23064826	23064826	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagagaagaaggcatatgttCgactggctcctgattaccat	11	8	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23064826	T	T	23064826	1	4	70	0	1	0	0	0	0	0	0	0	16403	899	31	4		4	TNFRSF10A	8	23064826	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	293935	23064826	123299196	280	78141											
HGSNAT	138050	broad.mit.edu	37	chr8	43050809	43050814	+	Intron	DEL	GAGGGT	-	-													aggaggggctggaggaggagGagggtgagggtgtggatgag							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43050814	-	-	43050809	6	5	70	0	1	1	0	1	0	0	0	0	7155	1189	41	0		0	HGSNAT	8	43050809	Intron	DEL	GAGGGT	TCGA-17-Z041-01A-01W-0746-08	19985983	43050809	103313213	281	78142											
ST18	9705	broad.mit.edu	37	chr8	53197332	53197332	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggactaggaaatgtgaaaActctcagggggactggagtg	15	5	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53197332	C	C	53197332	1	2	70	0	1	0	0	0	0	0	0	0	15330	58	2	5		5	ST18	8	53197332	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	10146523	53197332	93166690	282	78143											
RGS20	8601	broad.mit.edu	37	chr8	54764338	54764338	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attagtataacttttggagaAgtctccccacagattcagag	8	8	2	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54764338	T	T	54764338	1	4	70	0	1	0	0	0	0	0	0	0	13412	87	3	5		5	RGS20	8	54764338	5'Flank	SNP	A	TCGA-17-Z041-01A-01W-0746-08	1567006	54764338	91599684	283	78144											
TOX	9760	broad.mit.edu	37	chr8	59880191	59880191	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactctgagagtgcagggaaAtttcctattgtcccatggaa	10	8	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59880191	C	C	59880191	1	2	70	0	1	0	0	0	0	0	0	0	16501	116	4	5		5	TOX	8	59880191	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	5115853	59880191	86483831	284	78145											
ARFGEF1	10565	broad.mit.edu	37	chr8	68172248	68172248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacagtaaattttctaataGcacccagaaaatagtagctt	5	9	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68172248	A	A	68172248	1	1	70	0	1	0	0	0	0	0	0	0	854	986	34	4		4	ARFGEF1	8	68172248	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	8292057	68172248	78191774	285	78146											
ZFHX4	79776	broad.mit.edu	37	chr8	77767846	77767846	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgacccggatgacaacgccGaccgcagcgaaacgtccagc	11	15	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767846	A	A	77767846	3	1	70	1	0	0	0	0	1	0	0	0	17761	1058	37	4	8723	4	ZFHX4	8	77767846	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	9595598	77767846	68596176	286	78147											
FAM82B	51115	broad.mit.edu	37	chr8	87494045	87494045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttttttgtagagtagggCtttatttccaggaaacagtg	10	4	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87494045	T	T	87494045	1	4	70	0	1	0	0	0	0	0	0	0	5685	812	28	4		4	FAM82B	8	87494045	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	9726199	87494045	58869977	287	78148											
CNBD1	168975	broad.mit.edu	37	chr8	87892992	87892993	+	Intron	INS	-	A	A													aacctttatgaacagcaatgINSaaaaaatcctcaacaaaata					rs147588450	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87892993	A	A	87892992	6	5	70	0	1	1	1	0	0	0	0	0	3623	1305	45	0		0	CNBD1	8	87892992	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	398947	87892992	58471030	288	78149											
CNBD1	168975	broad.mit.edu	37	chr8	88085689	88085689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttgatctttgaggttgCtgacctttgaataaggtttt	9	5	1	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88085689	A	A	88085689	1	1	70	0	1	0	0	0	0	0	0	0	3623	812	28	3		3	CNBD1	8	88085689	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	192697	88085689	58278333	289	78150											
RIMS2	9699	broad.mit.edu	37	chr8	104558030	104558033	+	Intron	DEL	GATC	-	-													cataaatgaaggagaaataaGatcgatccttttttaacaag					rs143436675		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104558033	-	-	104558030	6	5	70	0	1	1	0	1	0	0	0	0	13479	957	33	0		0	RIMS2	8	104558030	Intron	DEL	GATC	TCGA-17-Z041-01A-01W-0746-08	16472341	104558030	41805992	290	78151											
CSMD3	114788	broad.mit.edu	37	chr8	113727789	113727789	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaaaggagagtctcctcCctaatgcattttttgaggcc	9	9	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113727789	G	G	113727789	1	3	70	0	1	0	0	0	0	0	0	0	3980	638	22	4		4	CSMD3	8	113727789	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	9169759	113727789	32636233	291	78152											
SAMD12	401474	broad.mit.edu	37	chr8	119512247	119512247	+	Intron	DEL	C	-	-													tagacagtgatctgtacggtCcccccacatacatgaagatg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119512247	-	-	119512247	6	5	70	0	1	1	0	1	0	0	0	0	13928	870	30	0		0	SAMD12	8	119512247	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	5784458	119512247	26851775	292	78153											
ZHX2	22882	broad.mit.edu	37	chr8	123921950	123921950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacattcactccagcctccGgagtgatcctgatcttctgc	7	16	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123921950	T	T	123921950	1	4	70	0	1	0	0	0	0	0	0	0	17802	1131	39	1		1	ZHX2	8	123921950	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4409703	123921950	22442072	293	78154											
KCNQ3	3786	broad.mit.edu	37	chr8	133469341	133469342	+	Intron	DEL	GG	-	-													gaagtttacagatcacagaaGggagtggtcctcaaacaagg					rs34549689		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133469342	-	-	133469341	6	5	70	0	1	1	0	1	0	0	0	0	8154	1015	35	0		0	KCNQ3	8	133469341	Intron	DEL	GG	TCGA-17-Z041-01A-01W-0746-08	9547391	133469341	12894681	294	78155											
FAM135B	51059	broad.mit.edu	37	chr8	139373748	139373748	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtcaaataagatcagatCtttactctgaagaagctcac	6	8	5	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139373748	A	A	139373748	1	1	70	0	1	0	0	0	0	0	0	0	5495	928	32	3		3	FAM135B	8	139373748	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5904407	139373748	6990274	295	78156											
COL22A1	169044	broad.mit.edu	37	chr8	139641249	139641249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgacctcaagtgttcctcCtgccttggcttcccaggatg	9	15	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139641249	T	T	139641249	1	4	70	0	1	0	0	0	0	0	0	0	3713	696	24	4		4	COL22A1	8	139641249	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	267501	139641249	6722773	296	78157											
BAI1	575	broad.mit.edu	37	chr8	143569692	143569692	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catctgtgactttccctcctCtctgtctctcccgcctttga	5	17	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143569692	A	A	143569692	1	1	70	0	1	0	0	0	0	0	0	0	1303	928	32	3		3	BAI1	8	143569692	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3928443	143569692	2794330	297	78158											
PLEC	5339	broad.mit.edu	37	chr8	144991968	144991968	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacccagtgacggcgcgctcGgccgacagcagcttgtcctt	12	15	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144991968	A	A	144991968	2	1	70	1	0	0	0	0	0	0	0	1	12147	1103	39	4		4	PLEC	8	144991968	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1422276	144991968	1372054	298	78159											
RCL1	10171	broad.mit.edu	37	chr9	4853794	4853794	+	Intron	DEL	T	-	-													aatctaaaataaaccgtgacTtttttttttctaactttagt					rs74993333		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4853794	-	-	4853794	6	5	70	0	1	1	0	1	0	0	0	0	13286	1624	56	0		0	RCL1	9	4853794	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08		4853794	136359637	299	78160											
KDM4C	23081	broad.mit.edu	37	chr9	7131083	7131083	+	Intron	DEL	G	-	-													ttggcctaataacttcttcaGgaaaaaaacaaaacaaaaac					rs79176449		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7131083	-	-	7131083	6	5	70	0	1	1	0	1	0	0	0	0	8200	1015	35	0		0	KDM4C	9	7131083	Intron	DEL	G	TCGA-17-Z041-01A-01W-0746-08	2277289	7131083	134082348	300	78161											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18904472	18904472	+	Intron	DEL	A	-	-													agactccatctgagaaaaagAaaaaaaaagttatttttaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18904472	-	-	18904472	6	5	70	0	1	1	0	1	0	0	0	0	274	261	9	0		0	ADAMTSL1	9	18904472	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	11773389	18904472	122308959	301	78162											
C9orf82	79886	broad.mit.edu	37	chr9	26886165	26886165	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcctggcatagtttttTaatttcttctattgaacagt	6	7	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26886165	A	A	26886165	4	1	70	1	0	0	0	0	0	1	0	0	2525	1763	61	5	575	5	C9orf82	9	26886165	Nonsense_Mutation	SNP	T	TCGA-17-Z041-01A-01W-0746-08	7981693	26886165	114327266	302	78163											
LINGO2	158038	broad.mit.edu	37	chr9	28004900	28004900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttccttccagaaatggGtttgtgtttttatcgatatg	11	5	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28004900	T	T	28004900	1	4	70	0	1	0	0	0	0	0	0	0	8888	1276	44	3		3	LINGO2	9	28004900	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1118735	28004900	113208531	303	78164											
C9orf25	203259	broad.mit.edu	37	chr9	34431505	34431505	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgctttgtttccctcaTagataccacagaaatctggc	6	13	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34431505	C	C	34431505	1	2	70	0	1	0	0	0	0	0	0	0	2502	1421	49	5		5	C9orf25	9	34431505	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	6426605	34431505	106781926	304	78165											
TLN1	7094	broad.mit.edu	37	chr9	35711745	35711745	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcccagcagcagcttcattCaaccggctctgagcttcttg	9	14	4	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35711745	G	G	35711745	3	3	70	1	0	0	0	0	1	0	0	0	16070	825	29	4	4015	4	TLN1	9	35711745	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1280240	35711745	105501686	305	78166											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69420582	69420582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcctcctgggttcaagCgattctcctgactcagtctc	8	15	5	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69420582	T	T	69420582	1	4	70	0	1	0	0	0	0	0	0	0	650	783	27	4		4	ANKRD20A4	9	69420582	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	33708837	69420582	71792849	306	78167											
RORB	6096	broad.mit.edu	37	chr9	77169179	77169179	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaatctgggcctcctgactCctagtgccatgtatttgcat	9	11	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77169179	T	T	77169179	1	4	70	0	1	0	0	0	0	0	0	0	13640	870	30	4		4	RORB	9	77169179	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	7748597	77169179	64044252	307	78168											
PCSK5	5125	broad.mit.edu	37	chr9	78799303	78799304	+	Intron	INS	-	A	A													gagagactaggaagaagaagINSaaaaaaaaaagacctataaa					rs141402962	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78799304	A	A	78799303	6	5	70	0	1	1	1	0	0	0	0	0	11697	957	33	0		0	PCSK5	9	78799303	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1630124	78799303	62414128	308	78169											
ROR2	4920	broad.mit.edu	37	chr9	94404807	94404807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtaactcacccagggtcGcaagtagttagtggcagcac	11	10	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94404807	T	T	94404807	1	4	70	0	1	0	0	0	0	0	0	0	13638	1102	38	3		3	ROR2	9	94404807	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	15605504	94404807	46808624	309	78170											
ECM2	1842	broad.mit.edu	37	chr9	95270025	95270025	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgcttttaaagcgtgCctggttttcctcagctgtcc	8	10	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95270025	T	T	95270025	1	4	70	0	1	0	0	0	0	0	0	0	4938	754	26	4		4	ECM2	9	95270025	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	865218	95270025	45943406	310	78171											
ORM1	5004	broad.mit.edu	37	chr9	117086459	117086459	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtagagccctggaggcttTgggcacagagaaataaccac	12	9	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117086459	C	C	117086459	1	2	70	0	1	0	0	0	0	0	0	0	11361	1827	63	5		5	ORM1	9	117086459	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	21816434	117086459	24126972	311	78172											
DFNB31	25861	broad.mit.edu	37	chr9	117187123	117187123	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacctagcagtcagtcacaGataagtgggctggggggtgg	17	7	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117187123	T	T	117187123	1	4	70	0	1	0	0	0	0	0	0	0	4495	957	33	3		3	DFNB31	9	117187123	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	100664	117187123	24026308	312	78173											
NAIF1	203245	broad.mit.edu	37	chr9	130829113	130829113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgcctcaccaccctccaCggcggcccggacctgggcaa	12	20	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130829113	A	A	130829113	3	1	70	1	0	0	0	0	1	0	0	0	10240	536	19	3	723	3	NAIF1	9	130829113	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	13641990	130829113	10384318	313	78174											
MAN1B1	11253	broad.mit.edu	37	chr9	139997282	139997285	+	Intron	DEL	ACAC	-	-													gcgtgcaggtcggtggtgttAcacacattcacactgttgca					rs71835567		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139997285	-	-	139997282	6	5	70	0	1	1	0	1	0	0	0	0	9304	406	14	0		0	MAN1B1	9	139997282	Intron	DEL	ACAC	TCGA-17-Z041-01A-01W-0746-08	9168169	139997282	1216149	314	78175											
ADARB2	105	broad.mit.edu	37	chr10	1572293	1572293	+	Intron	DEL	T	-	-													tggtacctgtccactgccccTgccaatgcgggcacccaccc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1572293	-	-	1572293	6	5	70	0	1	1	0	1	0	0	0	0	283	1595	55	0		0	ADARB2	10	1572293	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08		1572293	133962454	315	78176											
ADARB2	105	broad.mit.edu	37	chr10	1750446	1750446	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggagttttctatgttgcaGgagaggtgagaagatcaaag	16	3	2	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1750446	C	C	1750446	1	2	70	0	1	0	0	0	0	0	0	0	283	1015	35	4		4	ADARB2	10	1750446	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	178153	1750446	133784301	316	78177											
UCN3	114131	broad.mit.edu	37	chr10	5412172	5412172	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcgtgtgtatatgcgtgtGtatgtgtgtgtatgtgcgtg	16	3	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5412172	A	A	5412172	1	1	70	0	1	0	0	0	0	0	0	0	17055	1392	48	4		4	UCN3	10	5412172	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3661726	5412172	130122575	317	78178											
PRKCQ	5588	broad.mit.edu	37	chr10	6544045	6544045	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcctcaccagaaacttGgcaccacagttaaaggaatt	8	11	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6544045	A	A	6544045	1	1	70	0	1	0	0	0	0	0	0	0	12621	1363	47	4		4	PRKCQ	10	6544045	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1131873	6544045	128990702	318	78179											
CAMK1D	57118	broad.mit.edu	37	chr10	12547839	12547839	+	Intron	DEL	T	-	-													ctgatttaataaaccaatgaTtttcagacagctgtcatctt							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12547839	-	-	12547839	6	5	70	0	1	1	0	1	0	0	0	0	2623	1508	52	0		0	CAMK1D	10	12547839	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	6003794	12547839	122986908	319	78180											
FRMD4A	55691	broad.mit.edu	37	chr10	14416888	14416897	+	Intron	DEL	GAAAGGGAAA	-	-													ggaagggaagggaagggaagGaaagggaaaggagaaggcag					rs11277364	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14416897	-	-	14416888	6	5	70	0	1	1	0	1	0	0	0	0	6111	1189	41	0		0	FRMD4A	10	14416888	Intron	DEL	GAAAGGGAAA	TCGA-17-Z041-01A-01W-0746-08	1869049	14416888	121117859	320	78181											
CUBN	8029	broad.mit.edu	37	chr10	16970475	16970475	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatatcattctggctccAgcttgcaatggtgcttcctg	11	10	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16970475	G	G	16970475	1	3	70	0	1	0	0	0	0	0	0	0	4084	203	7	5		5	CUBN	10	16970475	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	2553587	16970475	118564272	321	78182											
PLXDC2	84898	broad.mit.edu	37	chr10	20394416	20394419	+	Intron	DEL	GTTC	-	-													gcattaaaaagcaaatatttGttcgttcttatttggctcca					rs145281920		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20394419	-	-	20394416	6	5	70	0	1	1	0	1	0	0	0	0	12213	1392	48	0		0	PLXDC2	10	20394416	Intron	DEL	GTTC	TCGA-17-Z041-01A-01W-0746-08	3423941	20394416	115140331	322	78183											
PIP4K2A	5305	broad.mit.edu	37	chr10	22898632	22898632	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataacagggatttgaacatgGctcagttcattgatctggaa	10	6	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22898632	C	C	22898632	3	2	70	1	0	0	0	0	1	0	0	0	12031	1194	42	4	1097	4	PIP4K2A	10	22898632	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2504216	22898632	112636115	323	78184											
PIP4K2A	5305	broad.mit.edu	37	chr10	22965036	22965037	+	Intron	INS	-	T	T													ttttcctgtcttttcatctcINStctgagcctccgtggagagc					rs144116934	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22965037	T	T	22965036	6	5	70	0	1	1	1	0	0	0	0	0	12031	928	32	0		0	PIP4K2A	10	22965036	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	66404	22965036	112569711	324	78185											
MYO3A	53904	broad.mit.edu	37	chr10	26453066	26453072	+	Intron	DEL	AGTGAAG	-	-													gagctgaagaagtgatgggaAgtgaagagtgaagagtgatg					rs11278135		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26453072	-	-	26453066	6	5	70	0	1	1	0	1	0	0	0	0	10170	87	3	0		0	MYO3A	10	26453066	Intron	DEL	AGTGAAG	TCGA-17-Z041-01A-01W-0746-08	3488030	26453066	109081681	325	78186											
MPP7	143098	broad.mit.edu	37	chr10	28430562	28430562	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catataaatatatgcatgccGgcacacacgcgtacacatca	6	12	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28430562	A	A	28430562	1	1	70	0	1	0	0	0	0	0	0	0	9833	1131	39	4		4	MPP7	10	28430562	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1977496	28430562	107104185	326	78187											
RET	5979	broad.mit.edu	37	chr10	43601824	43601824	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgccctctgcatcctgcagGacaccgtggtggccacgctg	12	16	1	0	rs36008607		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43601824	A	A	43601824	3	1	70	1	0	0	0	0	1	0	0	0	13343	1188	41	4	886	4	RET	10	43601824	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	15171262	43601824	91932923	327	78188											
CXCL12	6387	broad.mit.edu	37	chr10	44874018	44874018	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacgtctttgccctttcatCtctcacaaggttttagtttt	5	12	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44874018	T	T	44874018	1	4	70	0	1	0	0	0	0	0	0	0	4113	928	32	4		4	CXCL12	10	44874018	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1272194	44874018	90660729	328	78189											
RBP3	5949	broad.mit.edu	37	chr10	48389204	48389204	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accagtgtggcccagcccagCgactgcataaggaaggcgaa	13	12	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48389204	G	G	48389204	2	3	70	1	0	0	0	0	0	0	0	1	13265	755	27	4		4	RBP3	10	48389204	Silent	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3515186	48389204	87145543	329	78190											
ARHGAP22	58504	broad.mit.edu	37	chr10	49710693	49710693	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttcccacctggccacctgGcaaactcctactcattcatc	4	18	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49710693	A	A	49710693	1	1	70	0	1	0	0	0	0	0	0	0	874	1218	42	4		4	ARHGAP22	10	49710693	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1321489	49710693	85824054	330	78191											
SGMS1	259230	broad.mit.edu	37	chr10	52310443	52310443	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgacccctcctcgtcaacCtcctttgacaacttttacct	3	17	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52310443	T	T	52310443	1	4	70	0	1	0	0	0	0	0	0	0	14327	696	24	4		4	SGMS1	10	52310443	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2599750	52310443	83224304	331	78192											
TACR2	6865	broad.mit.edu	37	chr10	71174637	71174638	+	Intron	DEL	AC	-	-													ggatgcatgcacgcgtgtgtAcacacacacacacagactca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71174638	-	-	71174637	6	5	70	0	1	1	0	1	0	0	0	0	15625	406	14	0		0	TACR2	10	71174637	Intron	DEL	AC	TCGA-17-Z041-01A-01W-0746-08	18864194	71174637	64360110	332	78193											
NRG3	10718	broad.mit.edu	37	chr10	83666658	83666658	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatagtgtagagcagtgaGggtctagaggattagtcaga	15	3	2	5			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83666658	A	A	83666658	1	1	70	0	1	0	0	0	0	0	0	0	10744	1015	35	4		4	NRG3	10	83666658	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	12492021	83666658	51868089	333	78194											
LRIT1	26103	broad.mit.edu	37	chr10	86001143	86001144	+	Frame_Shift_Ins	INS	-	G	G													ggggcagaagccccgggcctINSgggggggccacgcaagggcc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86001144	G	G	86001143	7	5	70	1	0	1	1	0	0	0	0	0	9034	1580	55	0	1834	0	LRIT1	10	86001143	Frame_Shift_Ins	INS	-	TCGA-17-Z041-01A-01W-0746-08	2334485	86001143	49533604	334	78195											
GRID1	2894	broad.mit.edu	37	chr10	87753649	87753651	+	Intron	DEL	GAT	-	-													gtctctgatgatgttcagtaGatgatgtttccttgcatggc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87753651	-	-	87753649	6	5	70	0	1	1	0	1	0	0	0	0	6837	957	33	0		0	GRID1	10	87753649	Intron	DEL	GAT	TCGA-17-Z041-01A-01W-0746-08	1752506	87753649	47781098	335	78196											
RNLS	55328	broad.mit.edu	37	chr10	89894308	89894309	+	Intron	INS	-	T	T													catcaccatcaccatcataaINStatgaccacctcaccaccac					rs74916537	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89894309	T	T	89894308	6	5	70	0	1	1	1	0	0	0	0	0	13616	116	4	0		0	RNLS	10	89894308	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	2140659	89894308	45640439	336	78197											
PCGF5	84333	broad.mit.edu	37	chr10	92954745	92954745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactatggtgaaagcagacaGtatagggggagtagatgtgg	16	4	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92954745	T	T	92954745	1	4	70	0	1	0	0	0	0	0	0	0	11671	1044	36	3		3	PCGF5	10	92954745	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3060437	92954745	42580002	337	78198											
EXOC6	54536	broad.mit.edu	37	chr10	94757159	94757159	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgccaggtgtatgatTtttctgattctttatgatgt	9	4	2	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94757159	A	A	94757159	1	1	70	0	1	0	0	0	0	0	0	0	5350	1856	64	5		5	EXOC6	10	94757159	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1802414	94757159	40777588	338	78199											
PIK3AP1	118788	broad.mit.edu	37	chr10	98357050	98357050	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttccttccttcctTccttccttccttccttcctt	0	20	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98357050	C	C	98357050	1	2	70	0	1	0	0	0	0	0	0	0	12003	1798	62	5		5	PIK3AP1	10	98357050	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3599891	98357050	37177697	339	78200											
C10orf79	80217	broad.mit.edu	37	chr10	105942139	105942139	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaactgtgtgttcagaatcGgatcccaaatctacggaaac	8	10	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105942139	A	A	105942139	2	1	70	1	0	0	0	0	0	0	0	1	1629	1103	39	4		4	C10orf79	10	105942139	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7585089	105942139	29592608	340	78201											
SORCS3	22986	broad.mit.edu	37	chr10	106464719	106464719	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggttttcttctctcctcCtccaccacaagtctggttca	7	14	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106464719	G	G	106464719	1	3	70	0	1	0	0	0	0	0	0	0	15046	696	24	4		4	SORCS3	10	106464719	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	522580	106464719	29070028	341	78202											
SORCS3	22986	broad.mit.edu	37	chr10	106769859	106769859	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacccaggttcaggggtgtGgctcaagtgcacctctgctc	14	12	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106769859	A	A	106769859	1	1	70	0	1	0	0	0	0	0	0	0	15046	1363	47	4		4	SORCS3	10	106769859	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	305140	106769859	28764888	342	78203											
SORCS3	22986	broad.mit.edu	37	chr10	106897413	106897413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaagtgtggttcccagaCcagcagcattggcatcacct	9	12	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106897413	A	A	106897413	1	1	70	0	1	0	0	0	0	0	0	0	15046	522	18	3		3	SORCS3	10	106897413	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	127554	106897413	28637334	343	78204											
HTRA1	5654	broad.mit.edu	37	chr10	124271531	124271531	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccgggacttcccagacgtGatctcaggagcgtatataat	10	11	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124271531	C	C	124271531	2	2	70	1	0	0	0	0	0	0	0	1	7523	1277	45	4		4	HTRA1	10	124271531	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	17374118	124271531	11263216	344	78205											
ADAM12	8038	broad.mit.edu	37	chr10	127764647	127764647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagctcttgctcccctcCcatcctcccccatctaatag	3	19	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127764647	A	A	127764647	1	1	70	0	1	0	0	0	0	0	0	0	236	638	22	2		2	ADAM12	10	127764647	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3493116	127764647	7770100	345	78206											
ADAM12	8038	broad.mit.edu	37	chr10	127839102	127839102	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattgcccatccaatggccTaagtggaagggaaagtccca	10	10	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127839102	C	C	127839102	1	2	70	0	1	0	0	0	0	0	0	0	236	1537	53	5		5	ADAM12	10	127839102	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	74455	127839102	7695645	346	78207											
DOCK1	1793	broad.mit.edu	37	chr10	128850972	128850972	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaaagtgttgaagaactaCgtggacggtgctgagaagcc	13	7	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128850972	T	T	128850972	2	4	70	1	0	0	0	0	0	0	0	1	4724	547	19	4		4	DOCK1	10	128850972	Silent	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1011870	128850972	6683775	347	78208											
GLRX3	10539	broad.mit.edu	37	chr10	131958235	131958235	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaccttgtaataatcaAgcttgaattcttttatttta	5	5	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131958235	T	T	131958235	1	4	70	0	1	0	0	0	0	0	0	0	6525	87	3	5		5	GLRX3	10	131958235	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	3107263	131958235	3576512	348	78209											
SERGEF	26297	broad.mit.edu	37	chr11	17822437	17822437	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtgagccaagggagagGcaggccttaaaattgaaggg	15	7	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17822437	A	A	17822437	1	1	70	0	1	0	0	0	0	0	0	0	14190	1218	42	4		4	SERGEF	11	17822437	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08		17822437	117184079	349	78210											
NELL1	4745	broad.mit.edu	37	chr11	21373603	21373603	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctccatgaagcctttAtgctaagctattctctttgt	7	10	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21373603	T	T	21373603	1	4	70	0	1	0	0	0	0	0	0	0	10428	464	16	5		5	NELL1	11	21373603	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	3551166	21373603	113632913	350	78211											
ANO3	63982	broad.mit.edu	37	chr11	26328429	26328430	+	Intron	INS	-	T	T													ctttctagccaactgggtaaINStttgaggtttcttttgtaat					rs143176376	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26328430	T	T	26328429	6	5	70	0	1	1	1	0	0	0	0	0	698	116	4	0		0	ANO3	11	26328429	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	4954826	26328429	108678087	351	78212											
KIF18A	81930	broad.mit.edu	37	chr11	28113095	28113095	+	Intron	DEL	A	-	-													aactgctttagcattgatgtAaaaaaaaaaaatggtgatta							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28113095	-	-	28113095	6	5	70	0	1	1	0	1	0	0	0	0	8350	377	13	0		0	KIF18A	11	28113095	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	1784666	28113095	106893421	352	78213											
KIF18A	81930	broad.mit.edu	37	chr11	28122108	28122109	+	Intron	INS	-	G	G													agaaaaatggtgtgagtgaaINSgggggggggtggtgtcaaga					rs148793396	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28122109	G	G	28122108	6	5	70	0	1	1	1	0	0	0	0	0	8350	87	3	0		0	KIF18A	11	28122108	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	9013	28122108	106884408	353	78214											
METT5D1	196074	broad.mit.edu	37	chr11	28220529	28220530	+	Intron	INS	-	T	T													ttatgaactctttttagtgaINSttttttttttttttaatgtc					rs112213168		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28220530	T	T	28220529	6	5	70	0	1	1	1	0	0	0	0	0	9585	348	12	0		0	METT5D1	11	28220529	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	98421	28220529	106785987	354	78215											
RAG1	5896	broad.mit.edu	37	chr11	36611206	36611206	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcccatcaggctacctAaaatatttttatgtagtcct	4	11	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36611206	G	G	36611206	1	3	70	0	1	0	0	0	0	0	0	0	13111	377	13	5		5	RAG1	11	36611206	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	8390677	36611206	98395310	355	78216											
LRRC4C	57689	broad.mit.edu	37	chr11	41300373	41300374	+	Intron	INS	-	G	G													tctgttttattttgttttgtINSgtttttttcccccaactttt					rs112196494	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41300374	G	G	41300373	6	5	70	0	1	1	1	0	0	0	0	0	9095	1711	59	0		0	LRRC4C	11	41300373	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	4689167	41300373	93706143	356	78217											
C11orf49	79096	broad.mit.edu	37	chr11	47182780	47182780	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatactgcccccttgtggggGccagacgggtcggacacggc	16	13	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47182780	A	A	47182780	1	1	70	0	1	0	0	0	0	0	0	0	1657	1218	42	4		4	C11orf49	11	47182780	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5882407	47182780	87823736	357	78218											
AGBL2	79841	broad.mit.edu	37	chr11	47736333	47736334	+	5'Flank	INS	-	C	C													caagaggacaagtgaaaaaaINSctgccaatacctccccgggc					rs141943146	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47736334	C	C	47736333	6	5	70	0	1	1	1	0	0	0	0	0	376	58	2	0		0	AGBL2	11	47736333	5'Flank	INS	-	TCGA-17-Z041-01A-01W-0746-08	553553	47736333	87270183	358	78219											
FOLH1	2346	broad.mit.edu	37	chr11	49175441	49175441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcactgaacttggaagCaatttctgtaaaattcttta	5	8	4	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49175441	A	A	49175441	3	1	70	1	0	0	0	0	1	0	0	0	6037	710	25	3	337	3	FOLH1	11	49175441	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1439108	49175441	85831075	359	78220											
ORAOV1	220064	broad.mit.edu	37	chr11	69482169	69482169	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccacggccgaaccggaaCcctcaccctcccaatgaaca	6	20	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69482169	A	A	69482169	1	1	70	0	1	0	0	0	0	0	0	0	11354	522	18	3		3	ORAOV1	11	69482169	3'UTR	SNP	C	TCGA-17-Z041-01A-01W-0746-08	20306728	69482169	65524347	360	78221											
ARRB1	408	broad.mit.edu	37	chr11	74994399	74994399	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgcagccgcgtcagggGcttcttgtcctcgggggccg	15	14	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74994399	A	A	74994399	3	1	70	1	0	0	0	0	1	0	0	0	984	1203	42	4	1018	4	ARRB1	11	74994399	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5512230	74994399	60012117	361	78222											
NARS2	79731	broad.mit.edu	37	chr11	78154811	78154811	+	Intron	DEL	A	-	-													tcaacagcagcaacctaaggAaaaaaaaaaaattattagca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78154811	-	-	78154811	6	5	70	0	1	1	0	1	0	0	0	0	10265	261	9	0		0	NARS2	11	78154811	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	3160412	78154811	56851705	362	78223											
DLG2	1740	broad.mit.edu	37	chr11	84732670	84732670	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagttcatggagcgaggatCtgtcttgttggtaacgttgc	15	6	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84732670	G	G	84732670	1	3	70	0	1	0	0	0	0	0	0	0	4595	928	32	4		4	DLG2	11	84732670	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	6577859	84732670	50273846	363	78224											
TMEM126B	55863	broad.mit.edu	37	chr11	85345351	85345351	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaattcactaatgtataacGtagttatgtctaagtaaagt	6	4	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85345351	A	A	85345351	1	1	70	0	1	0	0	0	0	0	0	0	16162	1160	40	4		4	TMEM126B	11	85345351	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	612681	85345351	49661165	364	78225											
CCDC83	220047	broad.mit.edu	37	chr11	85626623	85626623	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacacttacctattgtgagcAggtgccccacatacaaaagc	7	12	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85626623	T	T	85626623	1	4	70	0	1	0	0	0	0	0	0	0	2885	203	7	5		5	CCDC83	11	85626623	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	281272	85626623	49379893	365	78226											
ME3	10873	broad.mit.edu	37	chr11	86218540	86218541	+	Intron	INS	-	A	A													ccctccccagctcaggtgccINSaaaaatgcccttaccaccca					rs145180078	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86218541	A	A	86218540	6	5	70	0	1	1	1	0	0	0	0	0	9512	609	21	0		0	ME3	11	86218540	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	591917	86218540	48787976	366	78227											
FAT3	120114	broad.mit.edu	37	chr11	92121513	92121513	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcagaggagatgcctccTgatctcccaactatcactga	7	13	4	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92121513	A	A	92121513	1	1	70	0	1	0	0	0	0	0	0	0	5748	1595	55	5		5	FAT3	11	92121513	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	5902973	92121513	42885003	367	78228											
PGR	5241	broad.mit.edu	37	chr11	100908564	100908564	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacagagagaaaatgtcaTtcaactctcagtcagcaaac	7	9	4	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100908564	C	C	100908564	1	2	70	0	1	0	0	0	0	0	0	0	11900	1508	52	5		5	PGR	11	100908564	3'UTR	SNP	T	TCGA-17-Z041-01A-01W-0746-08	8787051	100908564	34097952	368	78229											
PDGFD	80310	broad.mit.edu	37	chr11	103780566	103780566	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctaggacaagaagcacatCtcctgttagaaagcctttgg	9	10	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103780566	A	A	103780566	1	1	70	0	1	0	0	0	0	0	0	0	11754	928	32	3		3	PDGFD	11	103780566	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2872002	103780566	31225950	369	78230											
PDGFD	80310	broad.mit.edu	37	chr11	103784748	103784748	+	Intron	DEL	A	-	-													tatgtttggaagtaggggtcAgggggcaacttgcctctaat					rs35478021		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103784748	-	-	103784748	6	5	70	0	1	1	0	1	0	0	0	0	11754	203	7	0		0	PDGFD	11	103784748	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	4182	103784748	31221768	370	78231											
PDGFD	80310	broad.mit.edu	37	chr11	103961025	103961025	+	Intron	DEL	G	-	-													caaaaattcagcatatataaGatctcttttagtgcttggta					rs60729269		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103961025	-	-	103961025	6	5	70	0	1	1	0	1	0	0	0	0	11754	957	33	0		0	PDGFD	11	103961025	Intron	DEL	G	TCGA-17-Z041-01A-01W-0746-08	176277	103961025	31045491	371	78232											
DSCAML1	57453	broad.mit.edu	37	chr11	117680619	117680620	+	Intron	DEL	CA	-	-													cacacacacacccacacactCacacacacattcacacattc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117680620	-	-	117680619	6	5	70	0	1	1	0	1	0	0	0	0	4809	841	29	0		0	DSCAML1	11	117680619	Intron	DEL	CA	TCGA-17-Z041-01A-01W-0746-08	13719594	117680619	17325897	372	78233											
GRIK4	2900	broad.mit.edu	37	chr11	120479733	120479733	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgtaacaaattccaaGtgaagtttggattgcacaat	9	7	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120479733	C	C	120479733	1	2	70	0	1	0	0	0	0	0	0	0	6842	1044	36	4		4	GRIK4	11	120479733	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2799114	120479733	14526783	373	78234											
NTM	50863	broad.mit.edu	37	chr11	131847029	131847029	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacactgaggaacccatcccTtcagaaatgcatggattgat	8	11	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131847029	A	A	131847029	1	1	70	0	1	0	0	0	0	0	0	0	10794	1624	56	5		5	NTM	11	131847029	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	11367296	131847029	3159487	374	78235											
OPCML	4978	broad.mit.edu	37	chr11	132625533	132625533	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggattcatttctgtaataaGaatcatatatagtcaaagtc	6	5	4	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132625533	C	C	132625533	1	2	70	0	1	0	0	0	0	0	0	0	10968	957	33	4		4	OPCML	11	132625533	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	778504	132625533	2380983	375	78236											
CACNA1C	775	broad.mit.edu	37	chr12	2500189	2500189	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggcagggtcagagaggacaGaggaagaggcaaccctaaga	16	7	1	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2500189	C	C	2500189	1	2	70	0	1	0	0	0	0	0	0	0	2566	957	33	4		4	CACNA1C	12	2500189	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08		2500189	131351706	376	78237											
FAM90A1	55138	broad.mit.edu	37	chr12	8380429	8380429	+	5'Flank	DEL	C	-	-													ggctggagggccgaggactaCccccgcttctaggtgagagg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8380429	-	-	8380429	6	5	70	0	1	1	0	1	0	0	0	0	5703	522	18	0		0	FAM90A1	12	8380429	5'Flank	DEL	C	TCGA-17-Z041-01A-01W-0746-08	5880240	8380429	125471466	377	78238											
ATF7IP	55729	broad.mit.edu	37	chr12	14598327	14598328	+	Intron	INS	-	T	T													cttttctttttctttctttcINSttttttttttgagagagagt					rs111253633		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14598328	T	T	14598327	6	5	70	0	1	1	1	0	0	0	0	0	1091	928	32	0		0	ATF7IP	12	14598327	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	6217898	14598327	119253568	378	78239											
AEBP2	121536	broad.mit.edu	37	chr12	19646679	19646679	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatattcactcattgatattCttctcgtgccctacacagca	5	12	4	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19646679	T	T	19646679	1	4	70	0	1	0	0	0	0	0	0	0	350	928	32	4		4	AEBP2	12	19646679	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5048352	19646679	114205216	379	78240											
SLCO1B3	28234	broad.mit.edu	37	chr12	21168507	21168507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaactattttaattccacGtacctataaacattatatag	2	7	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21168507	T	T	21168507	1	4	70	0	1	0	0	0	0	0	0	0	14838	1160	40	3		3	SLCO1B3	12	21168507	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1521828	21168507	112683388	380	78241											
SLCO1B3	28234	broad.mit.edu	37	chr12	21235691	21235696	+	Intron	DEL	TGTGTG	-	-													ttggtagaactaaaaggaaaTgtgtgtgtgtgtgtgtgtgt							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21235696	-	-	21235691	6	5	70	0	1	1	0	1	0	0	0	0	14838	1479	51	0		0	SLCO1B3	12	21235691	Intron	DEL	TGTGTG	TCGA-17-Z041-01A-01W-0746-08	67184	21235691	112616204	381	78242											
ABCC9	10060	broad.mit.edu	37	chr12	22085879	22085879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcatgcatatgttcattgCagcactattcacaatagcaa	6	9	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22085879	T	T	22085879	1	4	70	0	1	0	0	0	0	0	0	0	59	725	25	4		4	ABCC9	12	22085879	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	850188	22085879	111766016	382	78243											
ITPR2	3709	broad.mit.edu	37	chr12	26877673	26877673	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgttccagttctgcagcGtgctataagatgattatcaa	8	7	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26877673	C	C	26877673	3	2	70	1	0	0	0	0	1	0	0	0	7991	1136	40	4	8039	4	ITPR2	12	26877673	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4791794	26877673	106974222	383	78244											
CAPRIN2	65981	broad.mit.edu	37	chr12	30864403	30864403	+	Intron	SNP	T	C	C													aacctcaacaagataaatgcTaaaaagcaatgtgctttgga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30864403	C	C	30864403	1	2	70	0	1	0	0	0	0	0	0	0	2662	1537	53	5		5	CAPRIN2	12	30864403	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3986730	30864403	102987492	384	78245	356	2									
CAPRIN2	65981	broad.mit.edu	37	chr12	30864410	30864410	+	Intron	SNP	C	G	G													acaagataaatgctaaaaagCaatgtgctttggaaagaact							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30864410	G	G	30864410	1	3	70	0	1	0	0	0	0	0	0	0	2662	725	25	4		4	CAPRIN2	12	30864410	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	7	30864410	102987485	385	78246	356	2									
BICD1	636	broad.mit.edu	37	chr12	32459005	32459005	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccctgtctctgacttattCagtgagctgaacatttcaga	7	10	3	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32459005	T	T	32459005	2	4	70	1	0	0	0	0	0	0	0	1	1434	825	29	4		4	BICD1	12	32459005	Silent	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1594595	32459005	101392890	386	78247											
CPNE8	144402	broad.mit.edu	37	chr12	39123979	39123979	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagattcttacatacactGatacttagttaacctttggc	5	9	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39123979	T	T	39123979	1	4	70	0	1	0	0	0	0	0	0	0	3850	1305	45	3		3	CPNE8	12	39123979	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	6664974	39123979	94727916	387	78248											
PDZRN4	29951	broad.mit.edu	37	chr12	41747939	41747939	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacgcaacaaatatataatTaggcgatagcaatatgagat	8	5	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41747939	A	A	41747939	1	1	70	0	1	0	0	0	0	0	0	0	11804	1769	61	5		5	PDZRN4	12	41747939	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	2623960	41747939	92103956	388	78249											
PPHLN1	51535	broad.mit.edu	37	chr12	42729668	42729669	+	Intron	INS	-	T	T													tagtataaaatccataattcINSttttttttttctttagtggc							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42729669	T	T	42729668	6	5	70	0	1	1	1	0	0	0	0	0	12411	928	32	0		0	PPHLN1	12	42729668	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	981729	42729668	91122227	389	78250											
KRT8	3856	broad.mit.edu	37	chr12	53312026	53312026	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaagaagaagaagaagAagaagaagaagaagaaacaa	12	1	0	12			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53312026	G	G	53312026	1	3	70	0	1	0	0	0	0	0	0	0	8564	261	9	5		5	KRT8	12	53312026	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	10582358	53312026	80539869	390	78251											
SPRYD3	84926	broad.mit.edu	37	chr12	53470826	53470826	+	Intron	DEL	A	-	-													tctctgaaaaaataaaagttAaaaaaaaaaaaccctttcct							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53470826	-	-	53470826	6	5	70	0	1	1	0	1	0	0	0	0	15227	377	13	0		0	SPRYD3	12	53470826	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	158800	53470826	80381069	391	78252											
TIMELESS	8914	broad.mit.edu	37	chr12	56815001	56815002	+	Intron	INS	-	C	C													cctcgttcctgaccaccgcaINScccccccgcgcctgctctct							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56815002	C	C	56815001	6	5	70	0	1	1	1	0	0	0	0	0	16027	174	6	0		0	TIMELESS	12	56815001	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3344175	56815001	77036894	392	78253											
KIF5A	3798	broad.mit.edu	37	chr12	57961445	57961445	+	Intron	DEL	T	-	-													gtgggtggaagccttggctcTttttttttttttttttgaga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57961445	-	-	57961445	6	5	70	0	1	1	0	1	0	0	0	0	8375	1624	56	0		0	KIF5A	12	57961445	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	1146444	57961445	75890450	393	78254											
FAM19A2	338811	broad.mit.edu	37	chr12	62305435	62305435	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttgttgtctggggcagagCaaaaacaaaaccaggtttgg	13	6	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62305435	G	G	62305435	1	3	70	0	1	0	0	0	0	0	0	0	5579	725	25	4		4	FAM19A2	12	62305435	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	4343990	62305435	71546460	394	78255											
FAM19A2	338811	broad.mit.edu	37	chr12	62623339	62623339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accattcttgtattcctgggCttcccatctaatcattatca	4	12	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62623339	A	A	62623339	1	1	70	0	1	0	0	0	0	0	0	0	5579	812	28	3		3	FAM19A2	12	62623339	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	317904	62623339	71228556	395	78256											
USP15	9958	broad.mit.edu	37	chr12	62734423	62734423	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcattttgttacttactcaGgagtcattcaggagcaggtt	9	7	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62734423	C	C	62734423	1	2	70	0	1	0	0	0	0	0	0	0	17172	1015	35	4		4	USP15	12	62734423	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	111084	62734423	71117472	396	78257											
PPM1H	57460	broad.mit.edu	37	chr12	63090594	63090595	+	Intron	INS	-	A	A													taagttactcctcccagaccINSaaaaaggtggagtggcctta					rs147956482	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63090595	A	A	63090594	6	5	70	0	1	1	1	0	0	0	0	0	12442	609	21	0		0	PPM1H	12	63090594	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	356171	63090594	70761301	397	78258											
DPY19L2	283417	broad.mit.edu	37	chr12	64020321	64020321	+	Intron	DEL	C	-	-													gtcccactgtaaaaaaaaaaCaaaaaaaacagagaatacaa					rs7310030	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64020321	-	-	64020321	6	5	70	0	1	1	0	1	0	0	0	0	4781	493	17	0		0	DPY19L2	12	64020321	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	929727	64020321	69831574	398	78259											
C12orf66	144577	broad.mit.edu	37	chr12	64591360	64591360	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctaacatcataatgacagGatcaaatgcacacataacaa	5	9	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64591360	C	C	64591360	1	2	70	0	1	0	0	0	0	0	0	0	1722	1189	41	4		4	C12orf66	12	64591360	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	571039	64591360	69260535	399	78260											
HMGA2	8091	broad.mit.edu	37	chr12	66357093	66357093	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggcgccaacgttcgatttCtacctcagcagcagttggat	12	11	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66357093	T	T	66357093	1	4	70	0	1	0	0	0	0	0	0	0	7291	928	32	4		4	HMGA2	12	66357093	3'UTR	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1765733	66357093	67494802	400	78261											
CPM	1368	broad.mit.edu	37	chr12	69280108	69280108	+	Intron	DEL	C	-	-													tacaaggaaagaaaaaaaaaCaacagcaataaaagtaactc					rs67261124		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69280108	-	-	69280108	6	5	70	0	1	1	0	1	0	0	0	0	3840	493	17	0		0	CPM	12	69280108	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	2923015	69280108	64571787	401	78262											
PTPRR	5801	broad.mit.edu	37	chr12	71090082	71090083	+	Intron	DEL	CT	-	-													cataattaccatttatatgaCtctcgtttctagtctgtgac							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71090083	-	-	71090082	6	5	70	0	1	1	0	1	0	0	0	0	12918	580	20	0		0	PTPRR	12	71090082	Intron	DEL	CT	TCGA-17-Z041-01A-01W-0746-08	1809974	71090082	62761813	402	78263											
TRHDE	29953	broad.mit.edu	37	chr12	72857899	72857899	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaaggaggcccagcacacTgggggcctatcaaatggcag	13	12	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72857899	G	G	72857899	1	3	70	0	1	0	0	0	0	0	0	0	16603	1595	55	5		5	TRHDE	12	72857899	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1767817	72857899	60993996	403	78264											
NAV3	89795	broad.mit.edu	37	chr12	78368454	78368454	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattggttatttcagagtcaAgcaagtatgggttggagtcc	12	5	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78368454	T	T	78368454	1	4	70	0	1	0	0	0	0	0	0	0	10279	87	3	5		5	NAV3	12	78368454	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	5510555	78368454	55483441	404	78265											
PAWR	5074	broad.mit.edu	37	chr12	80015077	80015077	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattgatagtattaaagaaaTatttgtgcattcagaaatta	6	2	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80015077	C	C	80015077	1	2	70	0	1	0	0	0	0	0	0	0	11571	1421	49	5		5	PAWR	12	80015077	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1646623	80015077	53836818	405	78266											
LIN7A	8825	broad.mit.edu	37	chr12	81274554	81274555	+	Intron	DEL	AT	-	-													acacacacacacacacacacAtacacacacacagacacaca					rs71094995		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81274555	-	-	81274554	6	5	70	0	1	1	0	1	0	0	0	0	8883	232	8	0		0	LIN7A	12	81274554	Intron	DEL	AT	TCGA-17-Z041-01A-01W-0746-08	1259477	81274554	52577341	406	78267											
PLEKHG7	440107	broad.mit.edu	37	chr12	93131534	93131535	+	Intron	INS	-	G	G													gggagggagggaggaaggaaINSggaaggaaggaagggaaaga					rs138893118		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93131535	G	G	93131534	6	5	70	0	1	1	1	0	0	0	0	0	12170	87	3	0		0	PLEKHG7	12	93131534	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	11856980	93131534	40720361	407	78268											
APAF1	317	broad.mit.edu	37	chr12	99126093	99126093	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattttcctcctgtttgcttGagttcggttggggggaggag	15	7	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99126093	T	T	99126093	1	4	70	0	1	0	0	0	0	0	0	0	757	1305	45	3		3	APAF1	12	99126093	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5994559	99126093	34725802	408	78269											
NUP37	79023	broad.mit.edu	37	chr12	102493234	102493235	+	Intron	DEL	AC	-	-													agtatgcatttcttacaaaaAcacacacacacacacatttt					rs3841628		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102493235	-	-	102493234	6	5	70	0	1	1	0	1	0	0	0	0	10859	58	2	0		0	NUP37	12	102493234	Intron	DEL	AC	TCGA-17-Z041-01A-01W-0746-08	3367141	102493234	31358661	409	78270											
OASL	8638	broad.mit.edu	37	chr12	121465643	121465644	+	Intron	DEL	AG	-	-													gttgaaagagatgggaagacAgagagagagagaccctaaga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121465644	-	-	121465643	6	5	70	0	1	1	0	1	0	0	0	0	10897	203	7	0		0	OASL	12	121465643	Intron	DEL	AG	TCGA-17-Z041-01A-01W-0746-08	18972409	121465643	12386252	410	78271											
TMEM132B	114795	broad.mit.edu	37	chr12	126005088	126005089	+	Intron	INS	-	G	G													gttgaatgtgtctctctgctINSggaacacactttccctacat					rs150855860	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126005089	G	G	126005088	6	5	70	0	1	1	1	0	0	0	0	0	16169	1595	55	0		0	TMEM132B	12	126005088	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	4539445	126005088	7846807	411	78272											
TMEM132D	121256	broad.mit.edu	37	chr12	129807792	129807792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttactcgtgtttttaCaatttaaaaaaaaagcgtaa	4	6	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129807792	A	A	129807792	1	1	70	0	1	0	0	0	0	0	0	0	16170	493	17	3		3	TMEM132D	12	129807792	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3802704	129807792	4044103	412	78273											
TMEM132D	121256	broad.mit.edu	37	chr12	129891199	129891199	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagatatgtacacatgggtaCacacatacacaccatgtact	6	10	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129891199	G	G	129891199	1	3	70	0	1	0	0	0	0	0	0	0	16170	493	17	4		4	TMEM132D	12	129891199	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	83407	129891199	3960696	413	78274											
TMEM132D	121256	broad.mit.edu	37	chr12	129950304	129950304	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggagctatctcagctcacTgtaacctctgcctcccaggt	9	14	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129950304	A	A	129950304	1	1	70	0	1	0	0	0	0	0	0	0	16170	1595	55	5		5	TMEM132D	12	129950304	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	59105	129950304	3901591	414	78275											
TMEM132D	121256	broad.mit.edu	37	chr12	130160648	130160649	+	Intron	DEL	CA	-	-													aggaagacaaggtccctgctCacacagagctcagaaggaga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130160649	-	-	130160648	6	5	70	0	1	1	0	1	0	0	0	0	16170	841	29	0		0	TMEM132D	12	130160648	Intron	DEL	CA	TCGA-17-Z041-01A-01W-0746-08	210344	130160648	3691247	415	78276											
POLE	5426	broad.mit.edu	37	chr12	133216124	133216125	+	Intron	INS	-	CCCTCAACACAA	CCCTCAACACAA													ttgttcaggcttcaccgcatINScccaaactctgtgtgttcta					rs146016322	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CCCTCAACACAA	133216125	CCCTCAACACAA	CCCTCAACACAA	133216124	6	5	70	0	1	1	1	0	0	0	0	0	12291	1450	50	0		0	POLE	12	133216124	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3055476	133216124	635771	416	78277											
GOLGA3	2802	broad.mit.edu	37	chr12	133361374	133361375	+	Intron	DEL	AT	-	-													accccacaccacacatgcacAtgtgctcacacctcacactg					rs138464460		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133361375	-	-	133361374	6	5	70	0	1	1	0	1	0	0	0	0	6618	232	8	0		0	GOLGA3	12	133361374	Intron	DEL	AT	TCGA-17-Z041-01A-01W-0746-08	145250	133361374	490521	417	78278											
C1QTNF9B	387911	broad.mit.edu	37	chr13	24471206	24471206	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggggccctggacacagCctccgttctgtgcagtggga	15	12	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24471206	A	A	24471206	1	1	70	0	1	0	0	0	0	0	0	0	1991	754	26	3		3	C1QTNF9B	13	24471206	5'Flank	SNP	C	TCGA-17-Z041-01A-01W-0746-08		24471206	90698672	418	78279											
WASF3	10810	broad.mit.edu	37	chr13	27157983	27157983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcggcagatagtaacaGgagtcagaagtgtggttgcc	15	7	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27157983	T	T	27157983	1	4	70	0	1	0	0	0	0	0	0	0	17381	1015	35	2		2	WASF3	13	27157983	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2686777	27157983	88011895	419	78280											
FRY	10129	broad.mit.edu	37	chr13	32776799	32776799	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattctagtttaattttagaGttatgaccaggcacgatgcc	8	7	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32776799	C	C	32776799	1	2	70	0	1	0	0	0	0	0	0	0	6123	1044	36	4		4	FRY	13	32776799	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5618816	32776799	82393079	420	78281											
VPS36	51028	broad.mit.edu	37	chr13	53007887	53007887	+	Intron	DEL	A	-	-													gcccttattcttcctggctgAaaaaaaaaagaggtagaaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53007887	-	-	53007887	6	5	70	0	1	1	0	1	0	0	0	0	17331	261	9	0		0	VPS36	13	53007887	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	20231088	53007887	62161991	421	78282											
PCDH9	5101	broad.mit.edu	37	chr13	66916066	66916066	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgggctgcaagctataaCagggcaagtgtccacctcac	10	11	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66916066	A	A	66916066	1	1	70	0	1	0	0	0	0	0	0	0	11612	493	17	3		3	PCDH9	13	66916066	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	13908179	66916066	48253812	422	78283											
KLF12	11278	broad.mit.edu	37	chr13	74476367	74476367	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgaagaacagttttagaaGggtaagagattcagaaactg	11	4	1	5			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74476367	C	C	74476367	1	2	70	0	1	0	0	0	0	0	0	0	8411	1015	35	4		4	KLF12	13	74476367	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	7560301	74476367	40693511	423	78284											
GPC5	2262	broad.mit.edu	37	chr13	93387795	93387795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgagagttgatgagaactGcatattctgaaatgctttta	9	5	1	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93387795	A	A	93387795	1	1	70	0	1	0	0	0	0	0	0	0	6666	1334	46	4		4	GPC5	13	93387795	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	18911428	93387795	21782083	424	78285											
FARP1	10160	broad.mit.edu	37	chr13	99091193	99091193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcaaggctcccaaggcCggacctcggccacccaagtg	12	16	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99091193	T	T	99091193	1	4	70	0	1	0	0	0	0	0	0	0	5733	667	23	4		4	FARP1	13	99091193	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5703398	99091193	16078685	425	78286											
ATP11A	23250	broad.mit.edu	37	chr13	113487073	113487074	+	Intron	INS	-	C	C													tgccttcgtggccgcggggaINSccccccccaccccgcttctt					rs145913126	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113487074	C	C	113487073	6	5	70	0	1	1	1	0	0	0	0	0	1123	290	10	0		0	ATP11A	13	113487073	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	14395880	113487073	1682805	426	78287											
SRP54	6729	broad.mit.edu	37	chr14	35470215	35470215	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcagcatgctgtatttaaaGaacttgtgaaggtaaaagta	9	4	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35470215	T	T	35470215	4	4	70	1	0	0	0	0	0	1	0	0	15273	943	33	3	254	3	SRP54	14	35470215	Nonsense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08		35470215	71879325	427	78288											
LRFN5	145581	broad.mit.edu	37	chr14	42288024	42288024	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtggtgaagtctggtcttTtagtgtatctatcacctgaa	10	6	4	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42288024	C	C	42288024	1	2	70	0	1	0	0	0	0	0	0	0	9028	1856	64	5		5	LRFN5	14	42288024	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	6817809	42288024	65061516	428	78289											
FAM179B	23116	broad.mit.edu	37	chr14	45489537	45489537	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccctctttctgcagttaGcaagtctaaagctcttcgat	6	13	4	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45489537	A	A	45489537	1	1	70	0	1	0	0	0	0	0	0	0	5551	986	34	4		4	FAM179B	14	45489537	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3201513	45489537	61860003	429	78290											
PYGL	5836	broad.mit.edu	37	chr14	51379667	51379667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaacagagcgagactctGtctcaaaaaataaacaaaaa	8	8	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51379667	A	A	51379667	1	1	70	0	1	0	0	0	0	0	0	0	12969	1392	48	4		4	PYGL	14	51379667	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5890130	51379667	55969873	430	78291											
FBXO34	55030	broad.mit.edu	37	chr14	55825342	55825343	+	Intron	DEL	CT	-	-													ccccttgatccttcaaactcCttgcccatgaagaggcgcag					rs33970553		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55825343	-	-	55825342	6	5	70	0	1	1	0	1	0	0	0	0	5801	696	24	0		0	FBXO34	14	55825342	Intron	DEL	CT	TCGA-17-Z041-01A-01W-0746-08	4445675	55825342	51524198	431	78292											
C14orf37	145407	broad.mit.edu	37	chr14	58729756	58729756	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgcccaggctggagtgcAgtggcgcggtctcagctcac	15	12	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58729756	T	T	58729756	1	4	70	0	1	0	0	0	0	0	0	0	1784	203	7	5		5	C14orf37	14	58729756	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	2904414	58729756	48619784	432	78293											
FNTB	2342	broad.mit.edu	37	chr14	65418458	65418458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagagcagagctgtcccCttgtaggaaaaactggggag	16	7	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65418458	A	A	65418458	1	1	70	0	1	0	0	0	0	0	0	0	6036	696	24	2		2	FNTB	14	65418458	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	6688702	65418458	41931082	433	78294											
GPHN	10243	broad.mit.edu	37	chr14	67243965	67243965	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggataaattcctcgacaAatacactctcccaagactaa	4	11	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67243965	C	C	67243965	1	2	70	0	1	0	0	0	0	0	0	0	6675	29	1	5		5	GPHN	14	67243965	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	1825507	67243965	40105575	434	78295											
C14orf145	145508	broad.mit.edu	37	chr14	81258990	81258990	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agacataaggattcgtctatCaaggacatattgattatatg	8	5	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81258990	A	A	81258990	1	1	70	0	1	0	0	0	0	0	0	0	1762	841	29	3		3	C14orf145	14	81258990	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	14015025	81258990	26090550	435	78296											
CCDC88C	440193	broad.mit.edu	37	chr14	91844358	91844359	+	Intron	INS	-	G	G													gtaaggaagaagaggagagtINSggtacagaattgggcagaaa					rs148160005	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91844359	G	G	91844358	6	5	70	0	1	1	1	0	0	0	0	0	2893	1711	59	0		0	CCDC88C	14	91844358	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	10585368	91844358	15505182	436	78297											
CLMN	79789	broad.mit.edu	37	chr14	95657820	95657820	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaactgtctgtagaagtgCcccacccagaacccaaaata	6	14	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95657820	A	A	95657820	1	1	70	0	1	0	0	0	0	0	0	0	3574	754	26	3		3	CLMN	14	95657820	3'UTR	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3813462	95657820	11691720	437	78298											
HHIPL1	84439	broad.mit.edu	37	chr14	100123140	100123141	+	Intron	INS	-	A	A													aagaaaagaaagaaagaaagINSaaagaaagaaagaaagaaag					rs34186861		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100123141	A	A	100123140	6	5	70	0	1	1	1	0	0	0	0	0	7160	957	33	0		0	HHIPL1	14	100123140	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	4465320	100123140	7226400	438	78299											
C15orf2	23742	broad.mit.edu	37	chr15	24924603	24924603	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagcacctgccatgtaccTctccagaactcaggttgtgc	8	15	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24924603	C	C	24924603	1	2	70	0	1	0	0	0	0	0	0	0	1797	1566	54	5		5	C15orf2	15	24924603	3'UTR	SNP	T	TCGA-17-Z041-01A-01W-0746-08		24924603	77606789	439	78300											
OTUD7A	161725	broad.mit.edu	37	chr15	31984889	31984890	+	Intron	INS	-	T	T													ggtccctttctttgttcacaINSttttttccctcaggaatttt					rs147337917	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31984890	T	T	31984889	6	5	70	0	1	1	1	0	0	0	0	0	11412	232	8	0		0	OTUD7A	15	31984889	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	7060286	31984889	70546503	440	78301											
OTUD7A	161725	broad.mit.edu	37	chr15	32145083	32145083	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattcattcaaggttatactGatgaatacccaaaaggtcac	6	8	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32145083	C	C	32145083	1	2	70	0	1	0	0	0	0	0	0	0	11412	1305	45	4		4	OTUD7A	15	32145083	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	160194	32145083	70386309	441	78302											
AQR	9716	broad.mit.edu	37	chr15	35234266	35234266	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagctgctgtacttgacttcGtatcaagtctacttcctgtt	7	10	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35234266	C	C	35234266	3	2	70	1	0	0	0	0	1	0	0	0	837	1153	40	4	4086	4	AQR	15	35234266	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3089183	35234266	67297126	442	78303											
LTK	4058	broad.mit.edu	37	chr15	41796728	41796728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgggcagcccctaggaGggtccatccggcctcctcca	12	18	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41796728	T	T	41796728	3	4	70	1	0	0	0	0	1	0	0	0	9167	1000	35	2	375	2	LTK	15	41796728	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	6562462	41796728	60734664	443	78304											
DUOX1	53905	broad.mit.edu	37	chr15	45445725	45445746	+	Intron	DEL	TGTGTGTGTGTGTGTGTGTGTA	-	-													tgtgtgtgtgtgtgtgtgtgTgtgtgtgtgtgtgtgtgtgt					rs72014295		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45445746	-	-	45445725	6	5	70	0	1	1	0	1	0	0	0	0	4840	1711	59	0		0	DUOX1	15	45445725	Intron	DEL	TGTGTGTGTGTGTGTGTGTGTA	TCGA-17-Z041-01A-01W-0746-08	3648997	45445725	57085667	444	78305											
TEX9	374618	broad.mit.edu	37	chr15	56685676	56685676	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgtttcctcaagataaattCcatgatggtaagggttgttt	10	5	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56685676	G	G	56685676	1	3	70	0	1	0	0	0	0	0	0	0	15907	870	30	4		4	TEX9	15	56685676	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	11239951	56685676	45845716	445	78306											
VPS13C	54832	broad.mit.edu	37	chr15	62312815	62312815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttacaataggcagcagaGggaaatgtgtttacaggtta	11	6	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62312815	A	A	62312815	1	1	70	0	1	0	0	0	0	0	0	0	17318	1015	35	4		4	VPS13C	15	62312815	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5627139	62312815	40218577	446	78307											
TIPIN	54962	broad.mit.edu	37	chr15	66644551	66644551	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccatttcctgactctggtGaaacaaaccacgattcagta	6	12	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66644551	A	A	66644551	1	1	70	0	1	0	0	0	0	0	0	0	16048	1305	45	4		4	TIPIN	15	66644551	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4331736	66644551	35886841	447	78308											
SMAD3	4088	broad.mit.edu	37	chr15	67397850	67397850	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgaggcagggctgagcttGggcagggtggctgagagaat	20	6	0	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67397850	A	A	67397850	1	1	70	0	1	0	0	0	0	0	0	0	14873	1363	47	4		4	SMAD3	15	67397850	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	753299	67397850	35133542	448	78309											
PAQR5	54852	broad.mit.edu	37	chr15	69676758	69676758	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagggtgagcgggccctcCgtgttcatggtggagggtga	20	7	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69676758	T	T	69676758	1	4	70	0	1	0	0	0	0	0	0	0	11532	667	23	4		4	PAQR5	15	69676758	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2278908	69676758	32854634	449	78310											
PAQR5	54852	broad.mit.edu	37	chr15	69692614	69692614	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtcaggatgtctgcaGcaggtgcattgttaggtagc	15	7	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69692614	C	C	69692614	1	2	70	0	1	0	0	0	0	0	0	0	11532	986	34	4		4	PAQR5	15	69692614	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	15856	69692614	32838778	450	78311											
FSD2	123722	broad.mit.edu	37	chr15	83434003	83434003	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtaagtccgtcttcagaaaTggtcagccagggatggcaag	13	9	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83434003	C	C	83434003	3	2	70	1	0	0	0	0	1	0	0	0	6131	1464	51	5	526	5	FSD2	15	83434003	Missense_Mutation	SNP	T	TCGA-17-Z041-01A-01W-0746-08	13741389	83434003	19097389	451	78312											
KLHL25	64410	broad.mit.edu	37	chr15	86312638	86312638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccaggaactcggcggcaGcatcccgcacatcgtggaac	11	15	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86312638	A	A	86312638	3	1	70	1	0	0	0	0	1	0	0	0	8451	971	34	4	1369	4	KLHL25	15	86312638	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2878635	86312638	16218754	452	78313											
AGBL1	123624	broad.mit.edu	37	chr15	86740841	86740841	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaattctagagaagaaaGaaattgacaaaggaattgtt	9	2	1	5			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86740841	T	T	86740841	1	4	70	0	1	0	0	0	0	0	0	0	375	957	33	3		3	AGBL1	15	86740841	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	428203	86740841	15790551	453	78314											
C15orf58	390637	broad.mit.edu	37	chr15	90784057	90784057	+	Intron	DEL	T	-	-													ctccatctcaaaaaaaaaaaTaaataaataaatacaatgac					rs113126276		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90784057	-	-	90784057	6	5	70	0	1	1	0	1	0	0	0	0	1819	1421	49	0		0	C15orf58	15	90784057	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	4043216	90784057	11747335	454	78315											
ST8SIA2	8128	broad.mit.edu	37	chr15	92979287	92979289	+	Intron	DEL	TCT	-	-													ccctctcctctgtgcttctaTcttcttctcttctgtctcct					rs113451001		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92979289	-	-	92979287	6	5	70	0	1	1	0	1	0	0	0	0	15350	1450	50	0		0	ST8SIA2	15	92979287	Intron	DEL	TCT	TCGA-17-Z041-01A-01W-0746-08	2195230	92979287	9552105	455	78316											
CLEC16A	23274	broad.mit.edu	37	chr16	11213184	11213184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctatttttataccagtaCcatgctgtgttggttattac	7	7	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11213184	A	A	11213184	1	1	70	0	1	0	0	0	0	0	0	0	3532	522	18	3		3	CLEC16A	16	11213184	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08		11213184	79141569	456	78317											
TMC5	79838	broad.mit.edu	37	chr16	19502034	19502053	+	Intron	DEL	TTCCTTCCTTCCTTCCTTCC	-	-													ccttgcataggtagttttctTtccttccttccttccttcct					rs71887982		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19502053	-	-	19502034	6	5	70	0	1	1	0	1	0	0	0	0	16111	1856	64	0		0	TMC5	16	19502034	Intron	DEL	TTCCTTCCTTCCTTCCTTCC	TCGA-17-Z041-01A-01W-0746-08	8288850	19502034	70852719	457	78318											
ZP2	7783	broad.mit.edu	37	chr16	21217055	21217055	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaatttgcttcataccttActgtcgtcagccaagccaga	6	11	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21217055	G	G	21217055	2	3	70	1	0	0	0	0	0	0	0	1	18345	388	14	5		5	ZP2	16	21217055	Silent	SNP	A	TCGA-17-Z041-01A-01W-0746-08	1715021	21217055	69137698	458	78319											
PRKCB	5579	broad.mit.edu	37	chr16	23945223	23945224	+	Intron	INS	-	CCAT	CCAT													cttgtttgtcaattttctacINSccatccatccatccatcctt							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CCAT	23945224	CCAT	CCAT	23945223	6	5	70	0	1	1	1	0	0	0	0	0	12614	522	18	0		0	PRKCB	16	23945223	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	2728168	23945223	66409530	459	78320											
CACNG3	10368	broad.mit.edu	37	chr16	24372930	24372930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccctacaggtatcgattcCggaggcggtcaagttctcgc	11	13	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24372930	T	T	24372930	3	4	70	1	0	0	0	0	1	0	0	0	2584	643	23	4	708	4	CACNG3	16	24372930	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	427707	24372930	65981823	460	78321											
HS3ST4	9951	broad.mit.edu	37	chr16	25730853	25730853	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgggatagattcagcaGtttatcggtataggaaggga	15	4	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25730853	C	C	25730853	1	2	70	0	1	0	0	0	0	0	0	0	7434	1044	36	4		4	HS3ST4	16	25730853	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1357923	25730853	64623900	461	78322											
HS3ST4	9951	broad.mit.edu	37	chr16	25869220	25869221	+	Intron	INS	-	CTTC	CTTC													ttctttctttctttttctttINScttccttccttccttccttc					rs72453395		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTTC	25869221	CTTC	CTTC	25869220	6	5	70	0	1	1	1	0	0	0	0	0	7434	1798	62	0		0	HS3ST4	16	25869220	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	138367	25869220	64485533	462	78323											
GSG1L	146395	broad.mit.edu	37	chr16	27871613	27871613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacacaggctcagccctgCcctcgtcctgaatcgggctt	9	17	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27871613	A	A	27871613	1	1	70	0	1	0	0	0	0	0	0	0	6887	754	26	3		3	GSG1L	16	27871613	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2002393	27871613	62483140	463	78324											
GSG1L	146395	broad.mit.edu	37	chr16	27874433	27874433	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgaggttctgccagcTattgcttgctataaagtttt	8	9	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27874433	A	A	27874433	1	1	70	0	1	0	0	0	0	0	0	0	6887	1537	53	5		5	GSG1L	16	27874433	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	2820	27874433	62480320	464	78325											
ZNF720	124411	broad.mit.edu	37	chr16	31742686	31742686	+	Intron	DEL	T	-	-													ctcttctctgggaagacaacTttcttcaggatcttgagcat					rs71375943		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31742686	-	-	31742686	6	5	70	0	1	1	0	1	0	0	0	0	18249	1624	56	0		0	ZNF720	16	31742686	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	3868253	31742686	58612067	465	78326											
AMFR	267	broad.mit.edu	37	chr16	56417022	56417022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtatggtctatttcttcAgctcccactcatttcaatct	5	12	6	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56417022	G	G	56417022	1	3	70	0	1	0	0	0	0	0	0	0	571	203	7	5		5	AMFR	16	56417022	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	24674336	56417022	33937731	466	78327											
NFAT5	10725	broad.mit.edu	37	chr16	69728984	69728984	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagatagcttctatttttaAtgtttctgcagactgtagtc	7	7	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69728984	G	G	69728984	1	3	70	0	1	0	0	0	0	0	0	0	10455	116	4	5		5	NFAT5	16	69728984	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	13311962	69728984	20625769	467	78328											
HPR	3250	broad.mit.edu	37	chr16	72100388	72100388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaacagcaatgcagcccaCtgagaaaacatgcaggacct	9	12	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72100388	A	A	72100388	1	1	70	0	1	0	0	0	0	0	0	0	7404	580	20	3		3	HPR	16	72100388	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2371404	72100388	18254365	468	78329											
ZFHX3	463	broad.mit.edu	37	chr16	72991911	72991911	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctcgcctcgtgccagccGggggtggggctgcccgcttt	16	15	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72991911	A	A	72991911	3	1	70	1	0	0	0	0	1	0	0	0	17760	1115	39	4	9013	4	ZFHX3	16	72991911	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	891523	72991911	17362842	469	78330											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555321	76555321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctgattcttttcattgcGcccctttgaaaaactcaata	4	11	4	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76555321	A	A	76555321	1	1	70	0	1	0	0	0	0	0	0	0	3681	1102	38	4		4	CNTNAP4	16	76555321	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3563410	76555321	13799432	470	78331											
WWOX	51741	broad.mit.edu	37	chr16	78751160	78751160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctaaattggaaaaccatGgaatatagagatccagtagt	9	5	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78751160	T	T	78751160	1	4	70	0	1	0	0	0	0	0	0	0	17541	1363	47	2		2	WWOX	16	78751160	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2195839	78751160	11603593	471	78332											
WWOX	51741	broad.mit.edu	37	chr16	79042788	79042789	+	Intron	DEL	GC	-	-													ccacgtgtgtataatgagcaGcgcacacacacaaaggcgag					rs149832665		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79042789	-	-	79042788	6	5	70	0	1	1	0	1	0	0	0	0	17541	986	34	0		0	WWOX	16	79042788	Intron	DEL	GC	TCGA-17-Z041-01A-01W-0746-08	291628	79042788	11311965	472	78333											
WFDC1	58189	broad.mit.edu	37	chr16	84348750	84348750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccctggcacctgtaccCacgtgtggggtccttcattg	11	15	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84348750	A	A	84348750	1	1	70	0	1	0	0	0	0	0	0	0	17473	609	21	2		2	WFDC1	16	84348750	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5305962	84348750	6006003	473	78334											
ANKRD11	29123	broad.mit.edu	37	chr16	89346349	89346349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcaggctcgagctctgCagggagccgggtggaggcct	19	11	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89346349	A	A	89346349	3	1	70	1	0	0	0	0	1	0	0	0	639	710	25	3	1410	3	ANKRD11	16	89346349	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	4997599	89346349	1008404	474	78335											
TRPV3	162514	broad.mit.edu	37	chr17	3424400	3424400	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacggcaccctgatcttccTgcttcccaccctctcccacc	4	22	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3424400	C	C	3424400	1	2	70	0	1	0	0	0	0	0	0	0	16722	1595	55	5		5	TRPV3	17	3424400	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08		3424400	77770810	475	78336											
NTN1	9423	broad.mit.edu	37	chr17	9046797	9046798	+	Intron	INS	-	T	T													gcatcctcactttgctgtgcINSccttttggtttttacattgc					rs142653551	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9046798	T	T	9046797	6	5	70	0	1	1	1	0	0	0	0	0	10795	754	26	0		0	NTN1	17	9046797	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	5622397	9046797	72148413	476	78337											
TOM1L2	146691	broad.mit.edu	37	chr17	17865547	17865547	+	Intron	DEL	A	-	-													aaagtaaaatggtagttgccAggggctggggggaggaggga					rs36095502		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17865547	-	-	17865547	6	5	70	0	1	1	0	1	0	0	0	0	16476	203	7	0		0	TOM1L2	17	17865547	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	8818750	17865547	63329663	477	78338											
ALDH3A2	224	broad.mit.edu	37	chr17	19576290	19576290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaacccgggaggtggagGttgcagtgagccaagatcat	15	8	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19576290	T	T	19576290	1	4	70	0	1	0	0	0	0	0	0	0	498	1276	44	3		3	ALDH3A2	17	19576290	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1710743	19576290	61618920	478	78339											
AKAP10	11216	broad.mit.edu	37	chr17	19868214	19868216	+	Intron	DEL	AAC	-	-													cgagaatctgtctcagaaaaAacaacaacaacaacaaaaaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19868216	-	-	19868214	6	5	70	0	1	1	0	1	0	0	0	0	446	29	1	0		0	AKAP10	17	19868214	Intron	DEL	AAC	TCGA-17-Z041-01A-01W-0746-08	291924	19868214	61326996	479	78340											
CCDC144NL	339184	broad.mit.edu	37	chr17	20768862	20768862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatgaagggaatatgGttcaattaatcatctcataa	6	4	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20768862	T	T	20768862	1	4	70	0	1	0	0	0	0	0	0	0	2805	1276	44	3		3	CCDC144NL	17	20768862	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	900648	20768862	60426348	480	78341											
NF1	4763	broad.mit.edu	37	chr17	29598388	29598389	+	Intron	INS	-	T	T													gacatattactattaacacaINSttcatgaaatatgttaatac					rs146852924	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29598389	T	T	29598388	6	5	70	0	1	1	1	0	0	0	0	0	10451	232	8	0		0	NF1	17	29598388	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	8829526	29598388	51596822	481	78342											
ACCN1	40	broad.mit.edu	37	chr17	31591356	31591356	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactatgtgcatggcatgacTgcaagtgctttgcatggatt	11	8	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31591356	C	C	31591356	1	2	70	0	1	0	0	0	0	0	0	0	128	1595	55	5		5	ACCN1	17	31591356	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1992968	31591356	49603854	482	78343											
ACCN1	40	broad.mit.edu	37	chr17	32126579	32126579	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaaacattttatttccTgcttttatttttctccaaaa	1	8	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32126579	C	C	32126579	1	2	70	0	1	0	0	0	0	0	0	0	128	1595	55	5		5	ACCN1	17	32126579	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	535223	32126579	49068631	483	78344											
SLFN12	55106	broad.mit.edu	37	chr17	33761419	33761419	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaggaaggaaggaaggaagGaaggaagggaaagaaagaaa	18	0	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33761419	A	A	33761419	1	1	70	0	1	0	0	0	0	0	0	0	14848	1189	41	4		4	SLFN12	17	33761419	5'Flank	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1634840	33761419	47433791	484	78345											
GAS2L2	246176	broad.mit.edu	37	chr17	34079395	34079396	+	Intron	INS	-	C	C													aatgaggatccaggctcctgINSccccccagagctagcctgtg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34079396	C	C	34079395	6	5	70	0	1	1	1	0	0	0	0	0	6309	1334	46	0		0	GAS2L2	17	34079395	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	317976	34079395	47115815	485	78346											
TBC1D3	729873	broad.mit.edu	37	chr17	36359092	36359092	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataggtttacattaataccAtagagcaaataccagccaaa	5	8	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36359092	G	G	36359092	1	3	70	0	1	0	0	0	0	0	0	0	15739	232	8	5		5	TBC1D3	17	36359092	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	2279697	36359092	44836118	486	78347											
SRCIN1	80725	broad.mit.edu	37	chr17	36723122	36723122	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccttccttccttccttcCttccttccttccttccttcc	0	20	0	0	rs71138633		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36723122	T	T	36723122	1	4	70	0	1	0	0	0	0	0	0	0	15254	696	24	4		4	SRCIN1	17	36723122	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	364030	36723122	44472088	487	78348											
FKBP10	60681	broad.mit.edu	37	chr17	39975858	39975858	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatggaccaggggctgcagGgtgcctgcatgggggaacgc	20	9	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39975858	C	C	39975858	3	2	70	1	0	0	0	0	1	0	0	0	5959	1232	43	4	1016	4	FKBP10	17	39975858	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3252736	39975858	41219352	488	78349											
KAT2A	2648	broad.mit.edu	37	chr17	40270103	40270104	+	Intron	INS	-	G	G													gagagagagaagtcagggacINSgggggctgaagctgaggaga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40270104	G	G	40270103	6	5	70	0	1	1	1	0	0	0	0	0	8051	551	19	0		0	KAT2A	17	40270103	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	294245	40270103	40925107	489	78350											
DHX8	1659	broad.mit.edu	37	chr17	41590953	41590953	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatggttatatatttcaaaCttgttttcaaagatgaactt	5	4	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41590953	G	G	41590953	1	3	70	0	1	0	0	0	0	0	0	0	4555	580	20	4		4	DHX8	17	41590953	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1320850	41590953	39604257	490	78351											
STXBP4	252983	broad.mit.edu	37	chr17	53108420	53108420	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttgggtgtttaatcctggtCgactgtttctggtattgatt	11	6	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53108420	G	G	53108420	1	3	70	0	1	0	0	0	0	0	0	0	15473	899	31	4		4	STXBP4	17	53108420	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	11517467	53108420	28086790	491	78352											
ANKFN1	162282	broad.mit.edu	37	chr17	54547144	54547145	+	Intron	INS	-	T	T													gtctcagaaaattttttttcINStttttatttttattttactt					rs147460402	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54547145	T	T	54547144	6	5	70	0	1	1	1	0	0	0	0	0	625	928	32	0		0	ANKFN1	17	54547144	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1438724	54547144	26648066	492	78353											
MSI2	124540	broad.mit.edu	37	chr17	55481290	55481291	+	Intron	INS	-	TG	TG													gttgaaggaaacagaatgaaINStgtgcacacacacacacaca					rs146179814	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	55481291	TG	TG	55481290	6	5	70	0	1	1	1	0	0	0	0	0	9970	116	4	0		0	MSI2	17	55481290	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	934146	55481290	25713920	493	78354											
RNFT1	51136	broad.mit.edu	37	chr17	58030552	58030552	+	Intron	DEL	T	-	-													gtagggaatgaaagggattcTtttttttttttttttgagat					rs111894176		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58030552	-	-	58030552	6	5	70	0	1	1	0	1	0	0	0	0	13612	1624	56	0		0	RNFT1	17	58030552	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	2549262	58030552	23164658	494	78355											
HEATR6	63897	broad.mit.edu	37	chr17	58147229	58147230	+	Intron	DEL	AC	-	-													tctaataatgatgaataaggAcacacacacacacacgaaac							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58147230	-	-	58147229	6	5	70	0	1	1	0	1	0	0	0	0	7100	290	10	0		0	HEATR6	17	58147229	Intron	DEL	AC	TCGA-17-Z041-01A-01W-0746-08	116677	58147229	23047981	495	78356											
MAP3K3	4215	broad.mit.edu	37	chr17	61710219	61710219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggaggggttttcaaatgGgaaatatacgaaaagccaag	14	4	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61710219	A	A	61710219	1	1	70	0	1	0	0	0	0	0	0	0	9343	1247	43	4		4	MAP3K3	17	61710219	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3562990	61710219	19484991	496	78357											
PSMD12	5718	broad.mit.edu	37	chr17	65338954	65338955	+	Intron	INS	-	G	G													ctagctacctaggaagctgaINSggggggagaattctttgaac					rs139621829	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65338955	G	G	65338954	6	5	70	0	1	1	1	0	0	0	0	0	12801	319	11	0		0	PSMD12	17	65338954	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3628735	65338954	15856256	497	78358											
ABCA9	10350	broad.mit.edu	37	chr17	67024796	67024796	+	Intron	DEL	T	-	-													aaacaccacacctggcatgaTtttaaaaaaaattacactca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67024796	-	-	67024796	6	5	70	0	1	1	0	1	0	0	0	0	39	1508	52	0		0	ABCA9	17	67024796	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	1685842	67024796	14170414	498	78359											
SLC39A11	201266	broad.mit.edu	37	chr17	70739381	70739383	+	Intron	DEL	CCC	-	-													cagtctctcattgtttcctgCccccaagtgtcctctgctgc					rs57242704		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70739383	-	-	70739381	6	5	70	0	1	1	0	1	0	0	0	0	14728	754	26	0		0	SLC39A11	17	70739381	Intron	DEL	CCC	TCGA-17-Z041-01A-01W-0746-08	3714585	70739381	10455829	499	78360											
RNF157	114804	broad.mit.edu	37	chr17	74221685	74221686	+	Intron	INS	-	TCTT	TCTT													cacctaatatactgtaggcaINStctatgtctgtatttatggc					rs148951821	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCTT	74221686	TCTT	TCTT	74221685	6	5	70	0	1	1	1	0	0	0	0	0	13565	232	8	0		0	RNF157	17	74221685	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	3482304	74221685	6973525	500	78361											
USP36	57602	broad.mit.edu	37	chr17	76799860	76799861	+	Frame_Shift_Ins	INS	-	G	G													cctcttctcagaggggctctINSgggggggctcactggcctct					rs3088040	byFrequency;by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76799861	G	G	76799860	7	5	70	1	0	1	1	0	0	0	0	0	17194	1580	55	0	974	0	USP36	17	76799860	Frame_Shift_Ins	INS	-	TCGA-17-Z041-01A-01W-0746-08	2578175	76799860	4395350	501	78362											
PTPRM	5797	broad.mit.edu	37	chr18	8215543	8215543	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctttctttctttcttttCtttttttttttttttttttt	0	5	5	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8215543	T	T	8215543	1	4	70	0	1	0	0	0	0	0	0	0	12914	928	32	4		4	PTPRM	18	8215543	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08		8215543	69861705	502	78363											
MC2R	4158	broad.mit.edu	37	chr18	13884822	13884822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgaagcacaaagggggcCcagcagaagatgaagacccc	12	11	0	5			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13884822	A	A	13884822	3	1	70	1	0	0	0	0	1	0	0	0	9457	624	22	2	201	2	MC2R	18	13884822	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	5669279	13884822	64192426	503	78364											
ESCO1	114799	broad.mit.edu	37	chr18	19153748	19153748	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcctgatttgtttccttctGatgaagtatttgtctttcaa	6	7	3	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19153748	C	C	19153748	3	2	70	1	0	0	0	0	1	0	0	0	5290	1299	45	4	1501	4	ESCO1	18	19153748	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	5268926	19153748	58923500	504	78365											
TTC39C	125488	broad.mit.edu	37	chr18	21624017	21624022	+	Intron	DEL	TGTGTG	-	-													aaagagcatttgtgtatgttTgtgtgtgtgtgtgtgtgtgt							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21624022	-	-	21624017	6	5	70	0	1	1	0	1	0	0	0	0	16835	1827	63	0		0	TTC39C	18	21624017	Intron	DEL	TGTGTG	TCGA-17-Z041-01A-01W-0746-08	2470269	21624017	56453231	505	78366											
PSMA8	143471	broad.mit.edu	37	chr18	23758994	23758994	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttattaaacacaaaatttGctgaaataattctaatagtg	5	4	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23758994	A	A	23758994	1	1	70	0	1	0	0	0	0	0	0	0	12779	1334	46	4		4	PSMA8	18	23758994	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2134977	23758994	54318254	506	78367											
SLC14A2	8170	broad.mit.edu	37	chr18	42923283	42923283	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttatttgggctgccttgtGcctgccagtatgtagtttca	10	8	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42923283	C	C	42923283	1	2	70	0	1	0	0	0	0	0	0	0	14510	1334	46	4		4	SLC14A2	18	42923283	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	19164289	42923283	35153965	507	78368											
SLC14A2	8170	broad.mit.edu	37	chr18	43206849	43206849	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattcctgtttgccttggtTgccatgccaaccagcagttc	8	13	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43206849	G	G	43206849	1	3	70	0	1	0	0	0	0	0	0	0	14510	1827	63	5		5	SLC14A2	18	43206849	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	283566	43206849	34870399	508	78369											
IER3IP1	51124	broad.mit.edu	37	chr18	44683710	44683710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaagagaaaaaaaattccCactacaaatggcatatatgg	6	6	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44683710	A	A	44683710	1	1	70	0	1	0	0	0	0	0	0	0	7577	609	21	2		2	IER3IP1	18	44683710	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1476861	44683710	33393538	509	78370											
DYM	54808	broad.mit.edu	37	chr18	46593515	46593515	+	Intron	DEL	G	-	-													agtgttatggaggttcagtaGgggaaggagtggggtgatgt							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46593515	-	-	46593515	6	5	70	0	1	1	0	1	0	0	0	0	4880	1015	35	0		0	DYM	18	46593515	Intron	DEL	G	TCGA-17-Z041-01A-01W-0746-08	1909805	46593515	31483733	510	78371											
DCC	1630	broad.mit.edu	37	chr18	50282741	50282741	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctggggctttatgccatAtaaagagagctttccgctgt	11	9	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50282741	G	G	50282741	1	3	70	0	1	0	0	0	0	0	0	0	4315	464	16	5		5	DCC	18	50282741	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	3689226	50282741	27794507	511	78372											
DCC	1630	broad.mit.edu	37	chr18	50854868	50854870	+	Intron	DEL	AAG	-	-													tttttctggttttgatacatAagaagatctcagactttgac					rs35156113		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50854870	-	-	50854868	6	5	70	0	1	1	0	1	0	0	0	0	4315	377	13	0		0	DCC	18	50854868	Intron	DEL	AAG	TCGA-17-Z041-01A-01W-0746-08	572127	50854868	27222380	512	78373											
RNF152	220441	broad.mit.edu	37	chr18	59506015	59506015	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcacctccacgttcagatCtatcaaagtcttcacccagc	4	15	6	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59506015	G	G	59506015	1	3	70	0	1	0	0	0	0	0	0	0	13564	928	32	4		4	RNF152	18	59506015	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	8651147	59506015	18571233	513	78374											
ZCCHC2	54877	broad.mit.edu	37	chr18	60212014	60212015	+	Intron	DEL	TG	-	-													tagggaataaccatataataTgtgtgttttttttaaatcag					rs150177822		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60212015	-	-	60212014	6	5	70	0	1	1	0	1	0	0	0	0	17713	1479	51	0		0	ZCCHC2	18	60212014	Intron	DEL	TG	TCGA-17-Z041-01A-01W-0746-08	705999	60212014	17865234	514	78375											
SERPINB8	5271	broad.mit.edu	37	chr18	61647383	61647383	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatcaatcccaatatgtcaAttctcctgcacgcagccctg	5	14	3	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61647383	C	C	61647383	1	2	70	0	1	0	0	0	0	0	0	0	14220	116	4	5		5	SERPINB8	18	61647383	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	1435369	61647383	16429865	515	78376											
PALM	5064	broad.mit.edu	37	chr19	726057	726057	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggttacccctaggggaagAggcagagctgggatttgaac	15	8	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	726057	G	G	726057	1	3	70	0	1	0	0	0	0	0	0	0	11502	319	11	5		5	PALM	19	726057	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08		726057	58402926	516	78377											
ARHGEF18	23370	broad.mit.edu	37	chr19	7531739	7531739	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagaagaagaagaagaAggcttgagtctagtcggatg	13	3	1	6			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7531739	G	G	7531739	1	3	70	0	1	0	0	0	0	0	0	0	903	87	3	5		5	ARHGEF18	19	7531739	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	6805682	7531739	51597244	517	78378											
FBN3	84467	broad.mit.edu	37	chr19	8183498	8183499	+	Intron	INS	-	AC	AC													aaacactcccccttgtacagINSacacacagtcacacaaatgc					rs141431028	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	8183499	AC	AC	8183498	6	5	70	0	1	1	1	0	0	0	0	0	5761	957	33	0		0	FBN3	19	8183498	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	651759	8183498	50945485	518	78379											
MUC16	94025	broad.mit.edu	37	chr19	9008843	9008844	+	Intron	INS	-	A	A													caagagtgaaactctgtctcINSaaaaaaaaaaaaaagtgcaa					rs112867664		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9008844	A	A	9008843	6	5	70	0	1	1	1	0	0	0	0	0	10067	841	29	0		0	MUC16	19	9008843	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	825345	9008843	50120140	519	78380											
COL5A3	50509	broad.mit.edu	37	chr19	10108929	10108930	+	Intron	INS	-	AT	AT													acacacacacacacacacacINSacacggagtccaccctcaga					rs146616197	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	10108930	AT	AT	10108929	6	5	70	0	1	1	1	0	0	0	0	0	3730	493	17	0		0	COL5A3	19	10108929	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1100086	10108929	49020054	520	78381											
CCDC130	81576	broad.mit.edu	37	chr19	13873418	13873418	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctagcctacgaggacaagCagaaactcaagcggaccgag	11	12	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13873418	G	G	13873418	3	3	70	1	0	0	0	0	1	0	0	0	2792	711	25	4	761	4	CCDC130	19	13873418	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3764489	13873418	45255565	521	78382											
C19orf53	28974	broad.mit.edu	37	chr19	13885425	13885425	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacttgggggcgaggtggaCccccggcttcccggcctcac	16	15	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13885425	T	T	13885425	1	4	70	0	1	0	0	0	0	0	0	0	1954	522	18	4		4	C19orf53	19	13885425	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	12007	13885425	45243558	522	78383											
EMR3	84658	broad.mit.edu	37	chr19	14788109	14788109	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaacaaacaaacaggCaaacaaacaaaaaaaccact	4	9	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14788109	T	T	14788109	1	4	70	0	1	0	0	0	0	0	0	0	5148	725	25	4		4	EMR3	19	14788109	5'Flank	SNP	C	TCGA-17-Z041-01A-01W-0746-08	902684	14788109	44340874	523	78384											
EPHX3	79852	broad.mit.edu	37	chr19	15338904	15338904	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggctgatgtggtgcagGgaatagtctggggtgggagg	20	4	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15338904	T	T	15338904	2	4	70	1	0	0	0	0	0	0	0	1	5223	1219	43	2		2	EPHX3	19	15338904	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	550795	15338904	43790079	524	78385											
MYO9B	4650	broad.mit.edu	37	chr19	17314016	17314016	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttagcatcccgcagtcgtgcGagcagtgcctctcctatatc	9	14	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17314016	A	A	17314016	3	1	70	1	0	0	0	0	1	0	0	0	10179	1059	37	4	5053	4	MYO9B	19	17314016	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1975112	17314016	41814967	525	78386											
USHBP1	83878	broad.mit.edu	37	chr19	17374917	17374917	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggagctcccactggctgCctcgacctcctctgaactct	8	17	2	1	rs150872948	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17374917	G	G	17374917	3	3	70	1	0	0	0	0	1	0	0	0	17163	739	26	4	2058	4	USHBP1	19	17374917	Missense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	60901	17374917	41754066	526	78387											
ZNF430	80264	broad.mit.edu	37	chr19	21240398	21240398	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcatactggagagaaaccCtacaaatgtgaacaatgtgg	9	7	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21240398	G	G	21240398	2	3	70	1	0	0	0	0	0	0	0	1	18031	668	24	4		4	ZNF430	19	21240398	Silent	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3865481	21240398	37888585	527	78388											
RYR1	6261	broad.mit.edu	37	chr19	38932943	38932943	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagggaatgttgctggggTgggggggtcttctgacccct	19	8	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38932943	G	G	38932943	1	3	70	0	1	0	0	0	0	0	0	0	13879	1711	59	5		5	RYR1	19	38932943	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	17692545	38932943	20196040	528	78389											
SPTBN4	57731	broad.mit.edu	37	chr19	41062903	41062903	+	Intron	DEL	C	-	-													cctttgctcactttgctgtaCccccccccccacttcctgat					rs34510741		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41062903	-	-	41062903	6	5	70	0	1	1	0	1	0	0	0	0	15239	522	18	0		0	SPTBN4	19	41062903	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	2129960	41062903	18066080	529	78390											
PSG8	440533	broad.mit.edu	37	chr19	43285277	43285277	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccctctcccaagcaaggCagtcagccctgcaggaaaca	8	15	2	0	rs148450853	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43285277	T	T	43285277	1	4	70	0	1	0	0	0	0	0	0	0	12767	725	25	4		4	PSG8	19	43285277	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2222374	43285277	15843706	530	78391											
CEACAM20	125931	broad.mit.edu	37	chr19	45035081	45035081	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttccgtcttgctcctgcTacaggcagtcacaaagtatc	8	13	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45035081	A	A	45035081	1	1	70	0	1	0	0	0	0	0	0	0	3221	1537	53	5		5	CEACAM20	19	45035081	5'Flank	SNP	T	TCGA-17-Z041-01A-01W-0746-08	1749804	45035081	14093902	531	78392											
ZNF296	162979	broad.mit.edu	37	chr19	45575762	45575762	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccgtggtcccactgggcGtgacgcagcagcttccaggc	14	14	0	1	rs140362077	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45575762	A	A	45575762	2	1	70	1	0	0	0	0	0	0	0	1	17954	1136	40	4		4	ZNF296	19	45575762	Silent	SNP	G	TCGA-17-Z041-01A-01W-0746-08	540681	45575762	13553221	532	78393											
CCDC8	83987	broad.mit.edu	37	chr19	46914333	46914333	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactttaacaagagaataaaGagggttgttaggtggagacg	13	3	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46914333	A	A	46914333	1	1	70	0	1	0	0	0	0	0	0	0	2881	957	33	4		4	CCDC8	19	46914333	3'UTR	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1338571	46914333	12214650	533	78394											
SAE1	10055	broad.mit.edu	37	chr19	47658155	47658155	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgtgctgagcaacttaCgctgctctgtttttcccaca	9	12	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47658155	T	T	47658155	1	4	70	0	1	0	0	0	0	0	0	0	13916	551	19	4		4	SAE1	19	47658155	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	743822	47658155	11470828	534	78395											
TMEM143	55260	broad.mit.edu	37	chr19	48845652	48845653	+	Intron	INS	-	GGAA	GGAA													gaaagaaaagaggaagaatgINSggaaggaaggaagggaggga							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGAA	48845653	GGAA	GGAA	48845652	6	5	70	0	1	1	1	0	0	0	0	0	16180	1363	47	0		0	TMEM143	19	48845652	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1187497	48845652	10283331	535	78396											
ZNF611	81856	broad.mit.edu	37	chr19	53219831	53219831	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacaggcaatgtggagaaGgggtagggtgagggttgggc	21	3	0	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53219831	A	A	53219831	1	1	70	0	1	0	0	0	0	0	0	0	18164	1015	35	4		4	ZNF611	19	53219831	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	4374179	53219831	5909152	536	78397											
ZNF347	84671	broad.mit.edu	37	chr19	53659548	53659548	+	Intron	DEL	A	-	-													tgtaatcccagctacttgggAggctgaggcaggcaggagaa					rs35550478		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53659548	-	-	53659548	6	5	70	0	1	1	0	1	0	0	0	0	17987	319	11	0		0	ZNF347	19	53659548	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	439717	53659548	5469435	537	78398											
LILRB4	11006	broad.mit.edu	37	chr19	55179557	55179557	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtagacatcactgaaccCcagccagcccagacccctga	7	18	1	4			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55179557	T	T	55179557	1	4	70	0	1	0	0	0	0	0	0	0	8865	638	22	4		4	LILRB4	19	55179557	3'UTR	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1520009	55179557	3949426	538	78399											
EPN1	29924	broad.mit.edu	37	chr19	56203183	56203184	+	Frame_Shift_Ins	INS	-	G	G													tgccccgaccacagacccctINSgggggggcccagcacccatg							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56203184	G	G	56203183	7	5	70	1	0	1	1	0	0	0	0	0	5227	1580	55	0	1189	0	EPN1	19	56203183	Frame_Shift_Ins	INS	-	TCGA-17-Z041-01A-01W-0746-08	1023626	56203183	2925800	539	78400											
SPEF1	25876	broad.mit.edu	37	chr20	3761598	3761599	+	Intron	INS	-	C	C													cctggagggagttagaggcaINSccccccccaacatgcacaca							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3761599	C	C	3761598	6	5	70	0	1	1	1	0	0	0	0	0	15152	174	6	0		0	SPEF1	20	3761598	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08		3761598	59263922	540	78401											
PAK7	57144	broad.mit.edu	37	chr20	9770729	9770729	+	Intron	DEL	C	-	-													ctaccccatttcccaaacagCttttccatgacagcccaaag							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9770729	-	-	9770729	6	5	70	0	1	1	0	1	0	0	0	0	11499	812	28	0		0	PAK7	20	9770729	Intron	DEL	C	TCGA-17-Z041-01A-01W-0746-08	6009131	9770729	53254791	541	78402											
TASP1	55617	broad.mit.edu	37	chr20	13468244	13468244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagaattcagcatgtccCatgctcaaagataatacatg	8	9	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13468244	A	A	13468244	1	1	70	0	1	0	0	0	0	0	0	0	15708	609	21	2		2	TASP1	20	13468244	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	3697515	13468244	49557276	542	78403											
MACROD2	140733	broad.mit.edu	37	chr20	15928088	15928088	+	Intron	DEL	A	-	-													caagcatacagcctgtaaacAttatgttaacaaggcatatt					rs11302561		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15928088	-	-	15928088	6	5	70	0	1	1	0	1	0	0	0	0	9234	232	8	0		0	MACROD2	20	15928088	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	2459844	15928088	47097432	543	78404											
NINL	22981	broad.mit.edu	37	chr20	25442010	25442010	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcactgggagcagcttcggtCctggcccggtaagcacctgg	15	13	0	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25442010	G	G	25442010	1	3	70	0	1	0	0	0	0	0	0	0	10515	870	30	4		4	NINL	20	25442010	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	9513922	25442010	37583510	544	78405											
BPIL1	80341	broad.mit.edu	37	chr20	31604934	31604934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgggagccaggggagggGgctggggcctctgggacccc	20	11	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31604934	T	T	31604934	1	4	70	0	1	0	0	0	0	0	0	0	1500	1247	43	2		2	BPIL1	20	31604934	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	6162924	31604934	31420586	545	78406											
PTPRT	11122	broad.mit.edu	37	chr20	40722998	40722998	+	Intron	DEL	T	-	-													gttttatgagaattcatttaTtttttatagttatctcagtt					rs5841447		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40722998	-	-	40722998	6	5	70	0	1	1	0	1	0	0	0	0	12920	1508	52	0		0	PTPRT	20	40722998	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	9118064	40722998	22302522	546	78407											
TOX2	84969	broad.mit.edu	37	chr20	42574443	42574443	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatttcaccttatacgaatGggatggggggtgggggtgct	16	7	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42574443	C	C	42574443	1	2	70	0	1	0	0	0	0	0	0	0	16502	1363	47	4		4	TOX2	20	42574443	5'Flank	SNP	G	TCGA-17-Z041-01A-01W-0746-08	1851445	42574443	20451077	547	78408											
PREX1	57580	broad.mit.edu	37	chr20	47293920	47293921	+	Intron	INS	-	G	G													ataagagctatcaggtcagaINSggacagaaaaatctgcagct					rs148772668	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47293921	G	G	47293920	6	5	70	0	1	1	1	0	0	0	0	0	12582	319	11	0		0	PREX1	20	47293920	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	4719477	47293920	15731600	548	78409											
TMEM189-UBE2V1	387522	broad.mit.edu	37	chr20	48747521	48747522	+	Intron	INS	-	C	C													agtgaagggacatccctgcaINScccccccaatcagaatcact							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48747522	C	C	48747521	6	5	70	0	1	1	1	0	0	0	0	0	16235	174	6	0		0	TMEM189-UBE2V1	20	48747521	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	1453601	48747521	14277999	549	78410											
GNAS	2778	broad.mit.edu	37	chr20	57430212	57430212	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtccccagcccaaagcctCgcgctctctcaaggtcaaga	9	16	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57430212	A	A	57430212	4	1	70	1	0	0	0	0	0	1	0	0	6574	893	31	3	2636	3	GNAS	20	57430212	Nonsense_Mutation	SNP	C	TCGA-17-Z041-01A-01W-0746-08	8682691	57430212	5595308	550	78411											
CDH4	1002	broad.mit.edu	37	chr20	60086855	60086855	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgtcctgggtgccttccCatatcttggtcctcagcatt	9	13	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60086855	T	T	60086855	1	4	70	0	1	0	0	0	0	0	0	0	3142	609	21	4		4	CDH4	20	60086855	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	2656643	60086855	2938665	551	78412											
CDH4	1002	broad.mit.edu	37	chr20	60326595	60326595	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttacaatctgatgagccttGtcaaatgcccagggtgcaga	10	9	2	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60326595	C	C	60326595	1	2	70	0	1	0	0	0	0	0	0	0	3142	1392	48	4		4	CDH4	20	60326595	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	239740	60326595	2698925	552	78413											
BAGE2	85319	broad.mit.edu	37	chr21	11021825	11021825	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgttctccctgcctcagCctcccaagtagctgggatta	9	14	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11021825	T	T	11021825	1	4	70	0	1	0	0	0	0	0	0	0	1297	754	26	4		4	BAGE2	21	11021825	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08		11021825	37108070	553	78414											
BAGE2	85319	broad.mit.edu	37	chr21	11025647	11025647	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgctgtctctattaaaaaTtttaaaaaagtagttgggtg	9	3	1	0	rs79830857		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11025647	A	A	11025647	1	1	70	0	1	0	0	0	0	0	0	0	1297	1508	52	5		5	BAGE2	21	11025647	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	3822	11025647	37104248	554	78415											
BAGE2	85319	broad.mit.edu	37	chr21	11030646	11030646	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattaggtaattcaatggTgcatgcataattttaccaat	7	5	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11030646	C	C	11030646	1	2	70	0	1	0	0	0	0	0	0	0	1297	1711	59	5		5	BAGE2	21	11030646	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	4999	11030646	37099249	555	78416											
BAGE2	85319	broad.mit.edu	37	chr21	11057368	11057368	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaacattaggtgactaagAggtgacataaaaaagactga	10	5	0	5			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11057368	T	T	11057368	1	4	70	0	1	0	0	0	0	0	0	0	1297	319	11	5		5	BAGE2	21	11057368	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	26722	11057368	37072527	556	78417											
NRIP1	8204	broad.mit.edu	37	chr21	16399106	16399106	+	Intron	DEL	A	-	-													tattgcccaggagtggaaatAaatgaactatacctacatac					rs67981570		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16399106	-	-	16399106	6	5	70	0	1	1	0	1	0	0	0	0	10747	377	13	0		0	NRIP1	21	16399106	Intron	DEL	A	TCGA-17-Z041-01A-01W-0746-08	5341738	16399106	31730789	557	78418											
NCAM2	4685	broad.mit.edu	37	chr21	22698651	22698651	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgatgttaagttatgcaGattcctcattagtcccatct	7	8	2	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22698651	C	C	22698651	1	2	70	0	1	0	0	0	0	0	0	0	10298	957	33	4		4	NCAM2	21	22698651	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	6299545	22698651	25431244	558	78419											
TIAM1	7074	broad.mit.edu	37	chr21	32526433	32526433	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaacattcagagtataggcAaaattccaggagaaaccaag	8	7	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32526433	G	G	32526433	1	3	70	0	1	0	0	0	0	0	0	0	16013	145	5	5		5	TIAM1	21	32526433	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	9827782	32526433	15603462	559	78420											
ATP5O	539	broad.mit.edu	37	chr21	35281302	35281302	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgccaacaggctcccaggtGatgctgatgccgcccacagt	11	15	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35281302	T	T	35281302	1	4	70	0	1	0	0	0	0	0	0	0	1166	1305	45	3		3	ATP5O	21	35281302	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2754869	35281302	12848593	560	78421											
DOPEY2	9980	broad.mit.edu	37	chr21	37586819	37586819	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcatacctgaagccttttcGcgtcctcatcagtctgcttg	8	13	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37586819	C	C	37586819	3	2	70	1	0	0	0	0	1	0	0	0	4748	1087	38	4	1124	4	DOPEY2	21	37586819	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2305517	37586819	10543076	561	78422											
CLDN14	23562	broad.mit.edu	37	chr21	37915266	37915266	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatttgcatactcagtttcAggtttaaatgcctgcgcata	7	9	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37915266	G	G	37915266	1	3	70	0	1	0	0	0	0	0	0	0	3506	203	7	5		5	CLDN14	21	37915266	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	328447	37915266	10214629	562	78423											
DSCAM	1826	broad.mit.edu	37	chr21	41516032	41516033	+	Intron	DEL	AT	-	-													aaaataggaaacaatgaaaaAtaaaataaattttaaaaaac					rs144684201		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41516033	-	-	41516032	6	5	70	0	1	1	0	1	0	0	0	0	4808	116	4	0		0	DSCAM	21	41516032	Intron	DEL	AT	TCGA-17-Z041-01A-01W-0746-08	3600766	41516032	6613863	563	78424											
PCBP3	54039	broad.mit.edu	37	chr21	47344951	47344951	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgaacaccgggaacagtcgAgtgggtagaaacagcacacg	14	10	0	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47344951	C	C	47344951	1	2	70	0	1	0	0	0	0	0	0	0	11596	319	11	5		5	PCBP3	21	47344951	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	5828919	47344951	784944	564	78425											
PCNT	5116	broad.mit.edu	37	chr21	47851553	47851553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggagctgcgtatcgaGcactcacgctgcgaggcctt	13	12	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47851553	T	T	47851553	3	4	70	1	0	0	0	0	1	0	0	0	11684	962	34	3	8325	3	PCNT	21	47851553	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	506602	47851553	278342	565	78426											
GAB4	128954	broad.mit.edu	37	chr22	17472550	17472550	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctgagaggtgacaggGcaaagtgcagagagctcagg	19	6	1	3			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17472550	A	A	17472550	1	1	70	0	1	0	0	0	0	0	0	0	6211	1218	42	4		4	GAB4	22	17472550	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08		17472550	33832016	566	78427											
SEZ6L	23544	broad.mit.edu	37	chr22	26612636	26612641	+	Intron	DEL	AAAAGA	-	-													catctcaaaaaagaaaaaggAaaagaaaaagaaaaagaaaa					rs78054692		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26612641	-	-	26612636	6	5	70	0	1	1	0	1	0	0	0	0	14256	261	9	0		0	SEZ6L	22	26612636	Intron	DEL	AAAAGA	TCGA-17-Z041-01A-01W-0746-08	9140086	26612636	24691930	567	78428											
SEZ6L	23544	broad.mit.edu	37	chr22	26709561	26709570	+	Intron	DEL	CACACACACG	-	-													cacacacacacacacacacaCacacacacgcacacacacac					rs150855077	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26709570	-	-	26709561	6	5	70	0	1	1	0	1	0	0	0	0	14256	493	17	0		0	SEZ6L	22	26709561	Intron	DEL	CACACACACG	TCGA-17-Z041-01A-01W-0746-08	96925	26709561	24595005	568	78429											
PATZ1	23598	broad.mit.edu	37	chr22	31731629	31731629	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacacccctaggcctcccatAcacgctcaggcccatcctct	6	20	2	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31731629	T	T	31731629	1	4	70	0	1	0	0	0	0	0	0	0	11570	406	14	5		5	PATZ1	22	31731629	Intron	SNP	A	TCGA-17-Z041-01A-01W-0746-08	5022068	31731629	19572937	569	78430											
PVALB	5816	broad.mit.edu	37	chr22	37212087	37212088	+	Intron	DEL	TT	-	-													gtacaatgttagatcatgtaTtttgtgtgtgtgtgtgtgtg					rs111360103		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37212088	-	-	37212087	6	5	70	0	1	1	0	1	0	0	0	0	12944	1508	52	0		0	PVALB	22	37212087	Intron	DEL	TT	TCGA-17-Z041-01A-01W-0746-08	5480458	37212087	14092479	570	78431											
TRIOBP	11078	broad.mit.edu	37	chr22	38111984	38111984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccatggtgatggcctggGgccccccagatagccatctc	11	15	1	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38111984	A	A	38111984	1	1	70	0	1	0	0	0	0	0	0	0	16678	1247	43	4		4	TRIOBP	22	38111984	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	899897	38111984	13192582	571	78432											
GRAP2	9402	broad.mit.edu	37	chr22	40343683	40343683	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggagacagcttgggaaagGcagccacagaggacatggct	16	8	0	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40343683	C	C	40343683	1	2	70	0	1	0	0	0	0	0	0	0	6820	1218	42	4		4	GRAP2	22	40343683	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	2231699	40343683	10960883	572	78433											
SULT4A1	25830	broad.mit.edu	37	chr22	44221565	44221566	+	3'UTR	INS	-	AATA	AATA													tgaaaagctctataaaatacINSaataatacggggttgaaaag					rs142895208	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AATA	44221566	AATA	AATA	44221565	6	5	70	0	1	1	1	0	0	0	0	0	15501	493	17	0		0	SULT4A1	22	44221565	3'UTR	INS	-	TCGA-17-Z041-01A-01W-0746-08	3877882	44221565	7083001	573	78434											
KIAA1644	85352	broad.mit.edu	37	chr22	44702278	44702278	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaactgagctcggggagctGtgatgacgatggcgtgtgca	18	7	0	3	rs75952948	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44702278	C	C	44702278	1	2	70	0	1	0	0	0	0	0	0	0	8320	1392	48	4		4	KIAA1644	22	44702278	Intron	SNP	G	TCGA-17-Z041-01A-01W-0746-08	480713	44702278	6602288	574	78435											
PPARA	5465	broad.mit.edu	37	chr22	46616085	46616085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgagctgtagcttaacaaCaactcctttcttcttgcttg	6	11	3	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46616085	T	T	46616085	1	4	70	0	1	0	0	0	0	0	0	0	12393	493	17	4		4	PPARA	22	46616085	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	1913807	46616085	4688481	575	78436											
TBC1D22A	25771	broad.mit.edu	37	chr22	47315631	47315632	+	Intron	INS	-	TC	TC													tcatcatctttcactcttttINSttttttttttgtagacttta					rs10694180		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	47315632	TC	TC	47315631	6	5	70	0	1	1	1	0	0	0	0	0	15730	1856	64	0		0	TBC1D22A	22	47315631	Intron	INS	-	TCGA-17-Z041-01A-01W-0746-08	699546	47315631	3988935	576	78437											
TUBGCP6	85378	broad.mit.edu	37	chr22	50660053	50660053	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagagggaccatgccaGtctgcacggacggctcagcc	14	14	2	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50660053	C	C	50660053	3	2	70	1	0	0	0	0	1	0	0	0	16896	1029	36	4	2764	4	TUBGCP6	22	50660053	Missense_Mutation	SNP	G	TCGA-17-Z041-01A-01W-0746-08	3344422	50660053	644513	577	78438											
GPR174	84636	broad.mit.edu	37	chrX	78426400	78426400	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggttattttatacttcGtatctccaacccactggcaa	7	10	1	0			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78426400	C	C	78426400	1	2	70	0	1	0	0	0	0	0	0	0	6737	1160	40	4		4	GPR174	23	78426400	5'Flank	SNP	G	TCGA-17-Z041-01A-01W-0746-08		78426400	76844160	578	78439											
CHM	1121	broad.mit.edu	37	chrX	85166403	85166403	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaaataaaggtaaaagTattttcttttaagtatttta	6	1	1	1			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85166403	C	C	85166403	1	2	70	0	1	0	0	0	0	0	0	0	3381	1653	57	5		5	CHM	23	85166403	Intron	SNP	T	TCGA-17-Z041-01A-01W-0746-08	6740003	85166403	70104157	579	78440											
ACSL4	2182	broad.mit.edu	37	chrX	108924111	108924111	+	Intron	DEL	T	-	-													gtttttaaagatttttgaacTtttttttttcagtcaaagaa							TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108924111	-	-	108924111	6	5	70	0	1	1	0	1	0	0	0	0	179	1624	56	0		0	ACSL4	23	108924111	Intron	DEL	T	TCGA-17-Z041-01A-01W-0746-08	23757708	108924111	46346449	580	78441											
AFF2	2334	broad.mit.edu	37	chrX	147891188	147891188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaaatcagtgacagaaCaaggagtcactttatttctg	8	7	3	2			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147891188	A	A	147891188	1	1	70	0	1	0	0	0	0	0	0	0	357	493	17	3		3	AFF2	23	147891188	Intron	SNP	C	TCGA-17-Z041-01A-01W-0746-08	38967077	147891188	7379372	581	78442											
GNB1	2782	broad.mit.edu	37	chr1	1721833	1721833	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacctccacccagactcaCgcaaatggcattgatgtcag	7	15	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1721833	G	G	1721833	5	3	71	1	0	0	0	0	0	0	1	0	6579	550	19	4	334	4	GNB1	1	1721833	Splice_Site	SNP	C	TCGA-17-Z042-01A-01W-0746-08		1721833	247528788	1	78443											
KCNAB2	8514	broad.mit.edu	37	chr1	6147572	6147572	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcttctggggcggaaaGtaggtgcaacagctggcgat	15	7	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6147572	T	T	6147572	5	4	71	1	0	0	0	0	0	0	1	0	8080	1043	36	3	398	3	KCNAB2	1	6147572	Splice_Site	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4425739	6147572	243103049	2	78444											
TAS1R1	80835	broad.mit.edu	37	chr1	6631383	6631383	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgcctgccccctggatctCttgggtggtcactgctcttt	11	14	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6631383	A	A	6631383	1	1	71	0	1	0	0	0	0	0	0	0	15681	928	32	3		3	TAS1R1	1	6631383	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	483811	6631383	242619238	3	78445											
AGTRAP	57085	broad.mit.edu	37	chr1	11807454	11807454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagggaggtgacctgcgGggtggtggcctcctgacggg	21	9	0	2	rs115781535	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11807454	T	T	11807454	1	4	71	0	1	0	0	0	0	0	0	0	403	1247	43	2		2	AGTRAP	1	11807454	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5176071	11807454	237443167	4	78446											
VPS13D	55187	broad.mit.edu	37	chr1	12302700	12302700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcttaaattgtttgagaGgtgaaaactgagagccctgg	13	5	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12302700	T	T	12302700	1	4	71	0	1	0	0	0	0	0	0	0	17319	1015	35	2		2	VPS13D	1	12302700	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	495246	12302700	236947921	5	78447											
PRAMEF12	390999	broad.mit.edu	37	chr1	12835857	12835857	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgatcctagacctttgcttCaagaatgggatgctggatga	12	7	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12835857	A	A	12835857	3	1	71	1	0	0	0	0	1	0	0	0	12529	825	29	3	465	3	PRAMEF12	1	12835857	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	533157	12835857	236414764	6	78448											
LOC649330	649330	broad.mit.edu	37	chr1	12907980	12907980	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctccttatcatattgaaCgaaggcaaagcccttatgaa	6	9	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12907980	T	T	12907980	3	4	71	1	0	0	0	0	1	0	0	0	8969	536	19	4	722	4	LOC649330	1	12907980	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	72123	12907980	236342641	7	78449											
PADI1	29943	broad.mit.edu	37	chr1	17563697	17563697	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgctctacgccccacgtttAaagcgttctttgagcaattc	7	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17563697	G	G	17563697	1	3	71	0	1	0	0	0	0	0	0	0	11471	377	13	5		5	PADI1	1	17563697	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	4655717	17563697	231686924	8	78450											
UBXN10	127733	broad.mit.edu	37	chr1	20517886	20517886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcactggaagatggggaaGggtggccctgagtccacagc	15	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20517886	T	T	20517886	3	4	71	1	0	0	0	0	1	0	0	0	17038	1000	35	2	834	2	UBXN10	1	20517886	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2954189	20517886	228732735	9	78451											
ZBTB40	9923	broad.mit.edu	37	chr1	22837825	22837825	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctgcagcctgtcatgcagGagttggcatacattggtaag	13	9	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22837825	T	T	22837825	4	4	71	1	0	0	0	0	0	1	0	0	17668	1175	41	3	2021	3	ZBTB40	1	22837825	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2319939	22837825	226412796	10	78452											
FGR	2268	broad.mit.edu	37	chr1	27939988	27939988	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgggaggccaaggcaggCggatcacttgaggtcaggag	17	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27939988	T	T	27939988	1	4	71	0	1	0	0	0	0	0	0	0	5931	783	27	4		4	FGR	1	27939988	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5102163	27939988	221310633	11	78453											
SNRNP40	9410	broad.mit.edu	37	chr1	31762255	31762255	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggttttatctgtggatgctGagaaaagcatactagaaagt	11	5	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31762255	C	C	31762255	4	2	71	1	0	0	0	0	0	1	0	0	14970	1294	45	4	724	4	SNRNP40	1	31762255	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3822267	31762255	217488366	12	78454											
GJB4	127534	broad.mit.edu	37	chr1	35226771	35226771	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccatctccaggttccccCaggcctcaaggctcccaagg	9	18	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35226771	A	A	35226771	1	1	71	0	1	0	0	0	0	0	0	0	6474	609	21	2		2	GJB4	1	35226771	5'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3464516	35226771	214023850	13	78455											
GJA4	2701	broad.mit.edu	37	chr1	35260337	35260337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctctatggccagtggCgcctgtacggctggaccatg	13	13	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35260337	A	A	35260337	3	1	71	1	0	0	0	0	1	0	0	0	6467	768	27	3	525	3	GJA4	1	35260337	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	33566	35260337	213990284	14	78456											
MACF1	23499	broad.mit.edu	37	chr1	39550144	39550144	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaggctggacgctgtGggtgtgagggaggaatgggc	20	8	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39550144	C	C	39550144	1	2	71	0	1	0	0	0	0	0	0	0	9232	1363	47	4		4	MACF1	1	39550144	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4289807	39550144	209700477	15	78457											
GUCA2B	2981	broad.mit.edu	37	chr1	42620603	42620603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccaggctcctccacctgGgttgtttctcttaagcaccc	8	17	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42620603	T	T	42620603	1	4	71	0	1	0	0	0	0	0	0	0	6957	1247	43	2		2	GUCA2B	1	42620603	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3070459	42620603	206630018	16	78458											
TIE1	7075	broad.mit.edu	37	chr1	43770805	43770805	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctggggcgcggcgcacGcgcgtcatctacgtgcacaa	16	13	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43770805	T	T	43770805	2	4	71	1	0	0	0	0	0	0	0	1	16016	1074	38	3		3	TIE1	1	43770805	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1150202	43770805	205479816	17	78459											
TIE1	7075	broad.mit.edu	37	chr1	43779623	43779623	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatcggagacgcaccttcaCctaccagtcaggctcggtca	10	15	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43779623	G	G	43779623	3	3	71	1	0	0	0	0	1	0	0	0	16016	507	18	4	2447	4	TIE1	1	43779623	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	8818	43779623	205470998	18	78460											
KIAA0467	23334	broad.mit.edu	37	chr1	43897569	43897569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttccctcacacaattcaaGgaggtaagttgccctccaaa	7	13	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43897569	T	T	43897569	3	4	71	1	0	0	0	0	1	0	0	0	8248	991	35	2	2648	2	KIAA0467	1	43897569	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	117946	43897569	205353052	19	78461											
MKNK1	8569	broad.mit.edu	37	chr1	47037778	47037778	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagcaacgtcccgcacCactcggctggcttctcgctc	10	18	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47037778	G	G	47037778	2	3	71	1	0	0	0	0	0	0	0	1	9697	581	21	4		4	MKNK1	1	47037778	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3140209	47037778	202212843	20	78462											
NRD1	4898	broad.mit.edu	37	chr1	52280193	52280193	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caaatataccaggactggctCctggcctcattccaggaagt	9	12	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52280193	G	G	52280193	1	3	71	0	1	0	0	0	0	0	0	0	10740	870	30	4		4	NRD1	1	52280193	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5242415	52280193	196970428	21	78463											
RAB3B	5865	broad.mit.edu	37	chr1	52426729	52426729	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttcagagacattacttatCacactgctggtaccatgtgt	9	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52426729	T	T	52426729	1	4	71	0	1	0	0	0	0	0	0	0	13040	841	29	4		4	RAB3B	1	52426729	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	146536	52426729	196823892	22	78464											
USP24	23358	broad.mit.edu	37	chr1	55567424	55567424	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggagaagaatgagcatttCtgccacagacacatttacac	9	9	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55567424	T	T	55567424	1	4	71	0	1	0	0	0	0	0	0	0	17181	928	32	4		4	USP24	1	55567424	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3140695	55567424	193683197	23	78465											
USP24	23358	broad.mit.edu	37	chr1	55642015	55642015	+	Intron	SNP	C	A	A													accctgcccccaccccgacaCacacaaaatatcacagcagc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55642015	A	A	55642015	1	1	71	0	1	0	0	0	0	0	0	0	17181	493	17	3		3	USP24	1	55642015	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	74591	55642015	193608606	24	78466	357	2									
USP24	23358	broad.mit.edu	37	chr1	55642017	55642017	+	Intron	SNP	C	A	A													cctgcccccaccccgacacaCacaaaatatcacagcagcac							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55642017	A	A	55642017	1	1	71	0	1	0	0	0	0	0	0	0	17181	493	17	3		3	USP24	1	55642017	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2	55642017	193608604	25	78467	357	2									
DAB1	1600	broad.mit.edu	37	chr1	57480832	57480832	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcactcgtgcctgggaCggtggcaaggggggtgaggg	22	7	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57480832	G	G	57480832	3	3	71	1	0	0	0	0	1	0	0	0	4250	536	19	4	511	4	DAB1	1	57480832	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1838815	57480832	191769789	26	78468											
LEPR	3953	broad.mit.edu	37	chr1	66085595	66085595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtataaatgagccttttacGtatttttctcctcagatcat	5	8	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66085595	T	T	66085595	1	4	71	0	1	0	0	0	0	0	0	0	8800	1160	40	3		3	LEPR	1	66085595	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8604763	66085595	183165026	27	78469											
SFRS11	9295	broad.mit.edu	37	chr1	70700421	70700421	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttgggggctcctactcttGatcctgcccttgctgcactt	9	14	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70700421	T	T	70700421	3	4	71	1	0	0	0	0	1	0	0	0	14279	1290	45	3	504	3	SFRS11	1	70700421	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4614826	70700421	178550200	28	78470											
SLC44A5	204962	broad.mit.edu	37	chr1	75707654	75707654	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtagcattttggtagatccTatgtttctaaggtaaaatag	9	4	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75707654	A	A	75707654	1	1	71	0	1	0	0	0	0	0	0	0	14753	1537	53	5		5	SLC44A5	1	75707654	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	5007233	75707654	173542967	29	78471											
SLC44A5	204962	broad.mit.edu	37	chr1	75805240	75805240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgtatgtttaaaaaagCatattccccaaaaaataatt	4	6	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75805240	A	A	75805240	1	1	71	0	1	0	0	0	0	0	0	0	14753	725	25	3		3	SLC44A5	1	75805240	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	97586	75805240	173445381	30	78472											
TTLL7	79739	broad.mit.edu	37	chr1	84373083	84373083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctctcatctgatcccCtttgcctgagtacagagctc	6	16	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84373083	A	A	84373083	1	1	71	0	1	0	0	0	0	0	0	0	16858	696	24	2		2	TTLL7	1	84373083	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	8567843	84373083	164877538	31	78473											
MCOLN2	255231	broad.mit.edu	37	chr1	85422092	85422092	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaagacgataaaggtacatCatgaaattatcactgcatta	7	6	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85422092	A	A	85422092	1	1	71	0	1	0	0	0	0	0	0	0	9489	841	29	3		3	MCOLN2	1	85422092	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1049009	85422092	163828529	32	78474											
COL24A1	255631	broad.mit.edu	37	chr1	86377088	86377088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaatgcttccagtcatcCcaacttctccaggtaagcca	6	16	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86377088	A	A	86377088	3	1	71	1	0	0	0	0	1	0	0	0	3715	623	22	2	2697	2	COL24A1	1	86377088	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	954996	86377088	162873533	33	78475											
HFM1	164045	broad.mit.edu	37	chr1	91818724	91818724	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatatctgtaatagaaataTatcagctgttactattaata	5	4	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91818724	C	C	91818724	1	2	71	0	1	0	0	0	0	0	0	0	7150	1421	49	5		5	HFM1	1	91818724	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	5441636	91818724	157431897	34	78476											
HFM1	164045	broad.mit.edu	37	chr1	91841053	91841053	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatgttaaaaactgaataTactaaaaaataagctatcaa	3	5	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91841053	C	C	91841053	1	2	71	0	1	0	0	0	0	0	0	0	7150	1421	49	5		5	HFM1	1	91841053	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	22329	91841053	157409568	35	78477											
HFM1	164045	broad.mit.edu	37	chr1	91851361	91851361	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgtcattagaataagcactCccatgtatattgtcagatat	6	7	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91851361	A	A	91851361	2	1	71	1	0	0	0	0	0	0	0	1	7150	842	30	3		3	HFM1	1	91851361	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10308	91851361	157399260	36	78478											
MTF2	22823	broad.mit.edu	37	chr1	93575764	93575764	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctacaagtaagtcttatgtAtggtcttttattctctaaac	5	7	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93575764	G	G	93575764	1	3	71	0	1	0	0	0	0	0	0	0	10017	464	16	5		5	MTF2	1	93575764	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1724403	93575764	155674857	37	78479											
ALG14	199857	broad.mit.edu	37	chr1	95530454	95530454	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctctatcagctcgatctaGttcaaaagaatttattttat	5	7	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95530454	C	C	95530454	3	2	71	1	0	0	0	0	1	0	0	0	516	1020	36	4	406	4	ALG14	1	95530454	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1954690	95530454	153720167	38	78480											
LPPR4	9890	broad.mit.edu	37	chr1	99753626	99753626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctatgaccggagtcttagcAtgccgtacattgaaccaacc	9	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99753626	T	T	99753626	3	4	71	1	0	0	0	0	1	0	0	0	9014	217	8	5	334	5	LPPR4	1	99753626	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	4223172	99753626	149496995	39	78481											
EXTL2	2135	broad.mit.edu	37	chr1	101354260	101354260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgataaattttgtgttaTacgtattttacaacagttaa	7	3	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101354260	A	A	101354260	1	1	71	0	1	0	0	0	0	0	0	0	5369	1421	49	5		5	EXTL2	1	101354260	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1600634	101354260	147896361	40	78482											
OLFM3	118427	broad.mit.edu	37	chr1	102270053	102270053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaaagattcccctgcaCttctcttggggtagccagtg	10	11	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102270053	A	A	102270053	3	1	71	1	0	0	0	0	1	0	0	0	10949	565	20	3	262	3	OLFM3	1	102270053	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	915793	102270053	146980568	41	78483											
AMY2A	279	broad.mit.edu	37	chr1	104162523	104162523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagacatttacataaaacaGtgttctttaacctcctcttc	4	10	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104162523	T	T	104162523	1	4	71	0	1	0	0	0	0	0	0	0	594	1044	36	3		3	AMY2A	1	104162523	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1892470	104162523	145088098	42	78484											
AMY1A	276	broad.mit.edu	37	chr1	104203099	104203099	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatacttaccttctgggaTgctaggtaaaaaaccaagtt	7	8	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104203099	G	G	104203099	3	3	71	1	0	0	0	0	1	0	0	0	591	1461	51	5	1018	5	AMY1A	1	104203099	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	40576	104203099	145047522	43	78485											
SARS	6301	broad.mit.edu	37	chr1	109766604	109766604	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattctttattcctaggtagAtttcgggcagacaacttgaa	9	7	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109766604	T	T	109766604	3	4	71	1	0	0	0	0	1	0	0	0	13956	330	12	5	147	5	SARS	1	109766604	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	5563505	109766604	139484017	44	78486											
KCND3	3752	broad.mit.edu	37	chr1	112524723	112524723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccttgctgcccgggaccGtgccgcacggcaccgtctcc	12	19	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112524723	T	T	112524723	3	4	71	1	0	0	0	0	1	0	0	0	8090	1145	40	3	1369	3	KCND3	1	112524723	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2758119	112524723	136725898	45	78487											
MOV10	4343	broad.mit.edu	37	chr1	113237067	113237067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcttaccacctctctctGcccaaagcctcctgagccgc	5	19	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113237067	T	T	113237067	1	4	71	0	1	0	0	0	0	0	0	0	9812	1334	46	3		3	MOV10	1	113237067	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	712344	113237067	136013554	46	78488											
CSDE1	7812	broad.mit.edu	37	chr1	115263355	115263355	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcctgtaaaacaggtacaAagtctaaaagctagtatttc	7	8	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115263355	C	C	115263355	1	2	71	0	1	0	0	0	0	0	0	0	3963	29	1	5		5	CSDE1	1	115263355	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2026288	115263355	133987266	47	78489											
CASQ2	845	broad.mit.edu	37	chr1	116268244	116268244	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcactgtggcagacacagcAgccacagcattatgaaatgt	9	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116268244	T	T	116268244	1	4	71	0	1	0	0	0	0	0	0	0	2707	203	7	5		5	CASQ2	1	116268244	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1004889	116268244	132982377	48	78490											
IGSF3	3321	broad.mit.edu	37	chr1	117120265	117120265	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccttttgaagacctcacctGacccagtggaagctcctcgg	9	14	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117120265	A	A	117120265	1	1	71	0	1	0	0	0	0	0	0	0	7671	1305	45	4		4	IGSF3	1	117120265	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	852021	117120265	132130356	49	78491											
PHGDH	26227	broad.mit.edu	37	chr1	120277957	120277957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgcccagtgcaagaaggGggtgcgtgtggtgaactgtg	17	7	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120277957	T	T	120277957	3	4	71	1	0	0	0	0	1	0	0	0	11936	1232	43	2	709	2	PHGDH	1	120277957	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3157692	120277957	128972664	50	78492											
PDE4DIP	9659	broad.mit.edu	37	chr1	145002425	145002426	+	Intron	INS	-	A	A													aaaatctgaattatacaaatINSaaaagtttaattcctggctg					rs147987741		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145002426	A	A	145002425	6	5	71	0	1	1	1	0	0	0	0	0	11737	1421	49	0		0	PDE4DIP	1	145002425	Intron	INS	-	TCGA-17-Z042-01A-01W-0746-08	24724468	145002425	104248196	51	78493											
NBPF10	100132406	broad.mit.edu	37	chr1	145366709	145366709	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaatagttcgttacctcatTaatggatctgtcctttttct	6	9	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145366709	A	A	145366709	1	1	71	0	1	0	0	0	0	0	0	0	10287	1769	61	5		5	NBPF10	1	145366709	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	364284	145366709	103883912	52	78494											
NBPF10	100132406	broad.mit.edu	37	chr1	145415248	145415248	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagcagaggtctgaggacCgtctcacaatcctctccctt	9	13	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145415248	T	T	145415248	1	4	71	0	1	0	0	0	0	0	0	0	10287	667	23	4		4	NBPF10	1	145415248	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	48539	145415248	103835373	53	78495											
BCL9	607	broad.mit.edu	37	chr1	147094086	147094086	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttaggtggccccccacctCctacagccagccagcctgcc	8	19	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147094086	G	G	147094086	3	3	71	1	0	0	0	0	1	0	0	0	1386	855	30	4	2939	4	BCL9	1	147094086	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1678838	147094086	102156535	54	78496											
FLG2	388698	broad.mit.edu	37	chr1	152325628	152325628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagtggtatctcctgtctgtCcatgagtaattctgtgtctg	10	8	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152325628	A	A	152325628	3	1	71	1	0	0	0	0	1	0	0	0	5980	855	30	3	2545	3	FLG2	1	152325628	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5231542	152325628	96924993	55	78497											
CRNN	49860	broad.mit.edu	37	chr1	152382377	152382377	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggtactgtctctcctgccTcagggttgctcacttgcatc	9	15	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152382377	C	C	152382377	3	2	71	1	0	0	0	0	1	0	0	0	3924	1551	54	5	310	5	CRNN	1	152382377	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	56749	152382377	96868244	56	78498											
LCE2A	353139	broad.mit.edu	37	chr1	152671551	152671551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggctccagctctgggggCtgctgcagctctgggggtgg	19	11	2	0	rs61812672		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152671551	A	A	152671551	2	1	71	1	0	0	0	0	0	0	0	1	8737	784	28	3		3	LCE2A	1	152671551	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	289174	152671551	96579070	57	78499											
SPRR2D	6703	broad.mit.edu	37	chr1	153012669	153012669	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcacaggaggatatttctGctggcactgctgaggtgggc	15	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153012669	A	A	153012669	4	1	71	1	0	0	0	0	0	1	0	0	15217	1328	46	4	68	4	SPRR2D	1	153012669	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	341118	153012669	96237952	58	78500											
HCN3	57657	broad.mit.edu	37	chr1	155253818	155253818	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggttcgcatcttcaacctCattgggatgatgctgctgct	11	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155253818	T	T	155253818	2	4	71	1	0	0	0	0	0	0	0	1	7064	813	29	4		4	HCN3	1	155253818	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2241149	155253818	93996803	59	78501											
ASH1L	55870	broad.mit.edu	37	chr1	155327184	155327184	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatattttcactgggttcCtcagagagatggcctctctg	10	9	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155327184	T	T	155327184	2	4	71	1	0	0	0	0	0	0	0	1	1045	680	24	4		4	ASH1L	1	155327184	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	73366	155327184	93923437	60	78502											
GON4L	54856	broad.mit.edu	37	chr1	155784289	155784289	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttatgcccctacctcattCcacaaagtctgaagtatctc	4	13	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155784289	A	A	155784289	1	1	71	0	1	0	0	0	0	0	0	0	6636	870	30	3		3	GON4L	1	155784289	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	457105	155784289	93466332	61	78503											
ETV3L	440695	broad.mit.edu	37	chr1	157068490	157068490	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagacaggggccacctccGctcttacctcactctgcaca	8	17	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157068490	A	A	157068490	1	1	71	0	1	0	0	0	0	0	0	0	5322	1102	38	4		4	ETV3L	1	157068490	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1284201	157068490	92182131	62	78504											
FCRL5	83416	broad.mit.edu	37	chr1	157512672	157512672	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactgagaggctcacagccTtactgggcttggcgccaagg	14	11	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157512672	A	A	157512672	3	1	71	1	0	0	0	0	1	0	0	0	5855	1609	56	5	1881	5	FCRL5	1	157512672	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	444182	157512672	91737949	63	78505											
FCRL3	115352	broad.mit.edu	37	chr1	157666024	157666024	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgacagtccctgaacccTgggctactgagcaaataagg	11	10	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157666024	A	A	157666024	3	1	71	1	0	0	0	0	1	0	0	0	5853	1580	55	5	1302	5	FCRL3	1	157666024	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	153352	157666024	91584597	64	78506											
KIRREL	55243	broad.mit.edu	37	chr1	158021120	158021120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctgactcccagatcctaCttctagttctatcatctata	3	14	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158021120	A	A	158021120	1	1	71	0	1	0	0	0	0	0	0	0	8395	580	20	3		3	KIRREL	1	158021120	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	355096	158021120	91229501	65	78507											
CD1E	913	broad.mit.edu	37	chr1	158323885	158323885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggtagggcaccagagggCtgagaggaagctctggggag	19	6	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158323885	A	A	158323885	1	1	71	0	1	0	0	0	0	0	0	0	3008	812	28	3		3	CD1E	1	158323885	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	302765	158323885	90926736	66	78508											
OR10R2	343406	broad.mit.edu	37	chr1	158450126	158450126	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaccctctgcattacccCactcttatgagctggcaggt	8	14	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158450126	G	G	158450126	2	3	71	1	0	0	0	0	0	0	0	1	11011	581	21	4		4	OR10R2	1	158450126	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	126241	158450126	90800495	67	78509											
OR10J3	441911	broad.mit.edu	37	chr1	159284105	159284105	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatatcccatgactgtgagCaggaagcagttgttgatgcc	11	9	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159284105	A	A	159284105	2	1	71	1	0	0	0	0	0	0	0	1	11005	697	25	3		3	OR10J3	1	159284105	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	833979	159284105	89966516	68	78510											
SLAMF6	114836	broad.mit.edu	37	chr1	160460196	160460196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttctctcaggatattagCaggtgcaagatcacacccag	8	11	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160460196	A	A	160460196	1	1	71	0	1	0	0	0	0	0	0	0	14481	725	25	3		3	SLAMF6	1	160460196	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1176091	160460196	88790425	69	78511											
LY9	4063	broad.mit.edu	37	chr1	160783797	160783797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtcagacacacaggggGtggggaagcaagaggacagg	18	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160783797	T	T	160783797	1	4	71	0	1	0	0	0	0	0	0	0	9189	1276	44	3		3	LY9	1	160783797	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	323601	160783797	88466824	70	78512											
CD244	51744	broad.mit.edu	37	chr1	160832283	160832283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtcagagctgtcaggaGctgctcggagtcaagttcca	13	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160832283	T	T	160832283	1	4	71	0	1	0	0	0	0	0	0	0	3017	986	34	3		3	CD244	1	160832283	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	48486	160832283	88418338	71	78513											
FCGR2C	9103	broad.mit.edu	37	chr1	161559647	161559647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtggacctgggagggCcaggatggatgaaatctgct	17	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161559647	A	A	161559647	1	1	71	0	1	0	0	0	0	0	0	0	5840	754	26	3		3	FCGR2C	1	161559647	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	727364	161559647	87690974	72	78514											
DDR2	4921	broad.mit.edu	37	chr1	162745633	162745633	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcgatgtacgcactgtcaGgtaaacaagccaggtcttcc	10	12	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162745633	C	C	162745633	3	2	71	1	0	0	0	0	1	0	0	0	4370	1014	35	4	2098	4	DDR2	1	162745633	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1185986	162745633	86504988	73	78515											
RGS4	5999	broad.mit.edu	37	chr1	163044230	163044230	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggagaaggattcctaccgCcgcttcctcaagtctcgatt	9	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163044230	G	G	163044230	2	3	71	1	0	0	0	0	0	0	0	1	13416	726	26	4		4	RGS4	1	163044230	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	298597	163044230	86206391	74	78516											
RXRG	6258	broad.mit.edu	37	chr1	165376126	165376126	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcgcagagtctccacCtcagaggggttggacaggcc	12	13	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165376126	G	G	165376126	3	3	71	1	0	0	0	0	1	0	0	0	13876	680	24	4	232	4	RXRG	1	165376126	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2331896	165376126	83874495	75	78517											
FAM78B	149297	broad.mit.edu	37	chr1	166138688	166138688	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaggaaagcatttcattGgggaatgtagttatgtttct	10	4	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166138688	T	T	166138688	1	4	71	0	1	0	0	0	0	0	0	0	5680	1363	47	2		2	FAM78B	1	166138688	5'Flank	SNP	G	TCGA-17-Z042-01A-01W-0746-08	762562	166138688	83111933	76	78518											
ILDR2	387597	broad.mit.edu	37	chr1	166904450	166904450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactattttccaaagacaCatcactgaactgactgttct	4	10	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166904450	A	A	166904450	1	1	71	0	1	0	0	0	0	0	0	0	7780	493	17	3		3	ILDR2	1	166904450	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	765762	166904450	82346171	77	78519											
MAEL	84944	broad.mit.edu	37	chr1	166973455	166973455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctatttcaaattttgaaCgtgggcataaccaagcaact	6	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166973455	A	A	166973455	3	1	71	1	0	0	0	0	1	0	0	0	9242	536	19	3	584	3	MAEL	1	166973455	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	69005	166973455	82277166	78	78520											
GPA33	10223	broad.mit.edu	37	chr1	167024389	167024389	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacttgccgagcttctaaGctagctccgggtctcctccc	9	16	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167024389	A	A	167024389	1	1	71	0	1	0	0	0	0	0	0	0	6651	986	34	4		4	GPA33	1	167024389	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	50934	167024389	82226232	79	78521											
GPA33	10223	broad.mit.edu	37	chr1	167059412	167059412	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaggctctgacagagcCtctccttcagccctaggtcc	11	14	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167059412	T	T	167059412	1	4	71	0	1	0	0	0	0	0	0	0	6651	696	24	4		4	GPA33	1	167059412	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	35023	167059412	82191209	80	78522											
BAT2L2	23215	broad.mit.edu	37	chr1	171509980	171509980	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagttaagactgtaaaCcaacagactatggcagcacc	8	12	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171509980	T	T	171509980	2	4	71	1	0	0	0	0	0	0	0	1	1326	506	18	4		4	BAT2L2	1	171509980	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4450568	171509980	77740641	81	78523											
RC3H1	149041	broad.mit.edu	37	chr1	173933262	173933262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcagatctgctggcccCcttggaggtatagaatgtgg	16	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173933262	A	A	173933262	3	1	71	1	0	0	0	0	1	0	0	0	13274	622	22	2	1761	2	RC3H1	1	173933262	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2423282	173933262	75317359	82	78524											
TNR	7143	broad.mit.edu	37	chr1	175360364	175360364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactccttgggcaattctGtggttcttttccaagtgacc	8	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175360364	T	T	175360364	1	4	71	0	1	0	0	0	0	0	0	0	16461	1392	48	3		3	TNR	1	175360364	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1427102	175360364	73890257	83	78525											
PAPPA2	60676	broad.mit.edu	37	chr1	176787750	176787750	+	Intron	DEL	T	-	-													catctgacccactgccccccTggtatgagccatcatcacct					rs76916298		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176787750	-	-	176787750	6	5	71	0	1	1	0	1	0	0	0	0	11527	1595	55	0		0	PAPPA2	1	176787750	Intron	DEL	T	TCGA-17-Z042-01A-01W-0746-08	1427386	176787750	72462871	84	78526											
C1orf49	84066	broad.mit.edu	37	chr1	178489804	178489804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccctggccctcctcccCcagtccccttagaagagcac	6	22	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178489804	A	A	178489804	1	1	71	0	1	0	0	0	0	0	0	0	2063	638	22	2		2	C1orf49	1	178489804	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1702054	178489804	70760817	85	78527											
C1orf125	126859	broad.mit.edu	37	chr1	179504097	179504097	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaaatctccaaagaaaGgtaaggattgcttcgtattt	7	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179504097	C	C	179504097	3	2	71	1	0	0	0	0	1	0	0	0	2013	1014	35	4	3125	4	C1orf125	1	179504097	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1014293	179504097	69746524	86	78528											
FAM163A	148753	broad.mit.edu	37	chr1	179731541	179731541	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtttgggagaggagaggtGttcacctggttgcgctccta	16	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179731541	T	T	179731541	1	4	71	0	1	0	0	0	0	0	0	0	5522	1392	48	3		3	FAM163A	1	179731541	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	227444	179731541	69519080	87	78529											
CEP350	9857	broad.mit.edu	37	chr1	180064598	180064598	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttactctgtctttttttAaaaaaaaatgatatgaggtc	5	5	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180064598	T	T	180064598	1	4	71	0	1	0	0	0	0	0	0	0	3284	377	13	5		5	CEP350	1	180064598	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	333057	180064598	69186023	88	78530											
CACNA1E	777	broad.mit.edu	37	chr1	181721500	181721500	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacacggatatcgaagTtcttttcatctgcctgagct	7	11	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181721500	G	G	181721500	1	3	71	0	1	0	0	0	0	0	0	0	2568	1740	60	5		5	CACNA1E	1	181721500	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1656902	181721500	67529121	89	78531											
HMCN1	83872	broad.mit.edu	37	chr1	186064378	186064378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttttctatgtagcacCaccaaatatggacaattcaa	6	8	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186064378	A	A	186064378	3	1	71	1	0	0	0	0	1	0	0	0	7287	594	21	2	10568	2	HMCN1	1	186064378	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4342878	186064378	63186243	90	78532											
FAM5C	339479	broad.mit.edu	37	chr1	190195351	190195352	+	Frame_Shift_Ins	INS	-	T	T													gacaccagcagtcattttccINSttgcagataaactctccctc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190195352	T	T	190195351	7	5	71	1	0	1	1	0	0	0	0	0	5645	680	24	0	1490	0	FAM5C	1	190195351	Frame_Shift_Ins	INS	-	TCGA-17-Z042-01A-01W-0746-08	4130973	190195351	59055270	91	78533											
KCNT2	343450	broad.mit.edu	37	chr1	196303157	196303157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggccacttgctgatctaCagcttgtatcttgcaagtct	9	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196303157	A	A	196303157	3	1	71	1	0	0	0	0	1	0	0	0	8162	478	17	3	1638	3	KCNT2	1	196303157	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6107806	196303157	52947464	92	78534											
CFH	3075	broad.mit.edu	37	chr1	196706795	196706795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcagtgtgaaggttaGgccaatatgaatactcaatt	8	9	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196706795	A	A	196706795	1	1	71	0	1	0	0	0	0	0	0	0	3313	1015	35	4		4	CFH	1	196706795	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	403638	196706795	52543826	93	78535											
ASPM	259266	broad.mit.edu	37	chr1	197093426	197093426	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttttagaaaggcaatttcTtcctttaattgatctaagtt	6	5	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197093426	A	A	197093426	3	1	71	1	0	0	0	0	1	0	0	0	1060	1606	56	5	7293	5	ASPM	1	197093426	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	386631	197093426	52157195	94	78536											
DENND1B	163486	broad.mit.edu	37	chr1	197704716	197704716	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaattctaaagggtattacTcgaaaatacaggttggggcc	11	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197704716	A	A	197704716	1	1	71	0	1	0	0	0	0	0	0	0	4467	1566	54	5		5	DENND1B	1	197704716	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	611290	197704716	51545905	95	78537											
CACNA1S	779	broad.mit.edu	37	chr1	201061308	201061308	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgccccagtggtctgaGgccctgtgtcctgtccatgc	11	16	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201061308	A	A	201061308	1	1	71	0	1	0	0	0	0	0	0	0	2573	1015	35	4		4	CACNA1S	1	201061308	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3356592	201061308	48189313	96	78538											
LEMD1	93273	broad.mit.edu	37	chr1	205389526	205389526	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catatgttccttctattgtaAgttgtttataaaccataaat	4	6	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205389526	G	G	205389526	1	3	71	0	1	0	0	0	0	0	0	0	8791	87	3	5		5	LEMD1	1	205389526	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	4328218	205389526	43861095	97	78539											
SLC41A1	254428	broad.mit.edu	37	chr1	205767264	205767264	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcctgaaaatgtcccaaCagatcaatagcaagactaca	6	11	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205767264	A	A	205767264	1	1	71	0	1	0	0	0	0	0	0	0	14743	493	17	3		3	SLC41A1	1	205767264	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	377738	205767264	43483357	98	78540											
CR2	1380	broad.mit.edu	37	chr1	207661795	207661795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggccaacatggtgaaacCccgtctctactaaaaataca	6	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207661795	A	A	207661795	1	1	71	0	1	0	0	0	0	0	0	0	3874	638	22	2		2	CR2	1	207661795	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1894531	207661795	41588826	99	78541											
PLXNA2	5362	broad.mit.edu	37	chr1	208212854	208212854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgggctcaccccagacCagcctcccatcctctttatt	5	18	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208212854	A	A	208212854	1	1	71	0	1	0	0	0	0	0	0	0	12215	609	21	2		2	PLXNA2	1	208212854	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	551059	208212854	41037767	100	78542											
CAMK1G	57172	broad.mit.edu	37	chr1	209773489	209773489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtgttgactggatcactaTgggatcacaacattttcttc	8	8	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209773489	A	A	209773489	1	1	71	0	1	0	0	0	0	0	0	0	2624	1479	51	5		5	CAMK1G	1	209773489	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1560635	209773489	39477132	101	78543											
LAMB3	3914	broad.mit.edu	37	chr1	209803758	209803758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagaagcaggctctagCtggggacagtgggaggatgt	17	7	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209803758	A	A	209803758	1	1	71	0	1	0	0	0	0	0	0	0	8684	812	28	3		3	LAMB3	1	209803758	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	30269	209803758	39446863	102	78544											
HSD11B1	3290	broad.mit.edu	37	chr1	209880254	209880254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgggaaaggtatcaaccCcagatgatttcttaatatag	9	6	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209880254	A	A	209880254	1	1	71	0	1	0	0	0	0	0	0	0	7442	638	22	2		2	HSD11B1	1	209880254	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	76496	209880254	39370367	103	78545											
KCNH1	3756	broad.mit.edu	37	chr1	211307359	211307359	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggaaactggcctcgggGcccgcacgcagtcccggctc	14	16	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211307359	T	T	211307359	1	4	71	0	1	0	0	0	0	0	0	0	8101	1218	42	3		3	KCNH1	1	211307359	5'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1427105	211307359	37943262	104	78546											
ATF3	467	broad.mit.edu	37	chr1	212788267	212788267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggacttttctctgagggtGgggctctggtgttggaggtc	18	6	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212788267	T	T	212788267	1	4	71	0	1	0	0	0	0	0	0	0	1085	1363	47	2		2	ATF3	1	212788267	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1480908	212788267	36462354	105	78547											
PTPN14	5784	broad.mit.edu	37	chr1	214560235	214560235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccacactggacgtgaaCgggaggcaggatgtacggct	14	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214560235	A	A	214560235	3	1	71	1	0	0	0	0	1	0	0	0	12889	536	19	3	2577	3	PTPN14	1	214560235	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1771968	214560235	34690386	106	78548											
PTPN14	5784	broad.mit.edu	37	chr1	214656672	214656672	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcttcactgtaggggcggTagaacttggagagccgcggc	15	9	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214656672	A	A	214656672	1	1	71	0	1	0	0	0	0	0	0	0	12889	1653	57	5		5	PTPN14	1	214656672	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	96437	214656672	34593949	107	78549											
KCNK2	3776	broad.mit.edu	37	chr1	215259901	215259901	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcatcggagccaccgtGttcaaagcattggagcagcc	11	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215259901	C	C	215259901	2	2	71	1	0	0	0	0	0	0	0	1	8136	1364	48	4		4	KCNK2	1	215259901	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	603229	215259901	33990720	108	78550											
USH2A	7399	broad.mit.edu	37	chr1	215987217	215987217	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagcgatgtccaggcttGgggttatagagcactccgtt	12	10	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215987217	T	T	215987217	2	4	71	1	0	0	0	0	0	0	0	1	17162	1335	47	2		2	USH2A	1	215987217	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	727316	215987217	33263404	109	78551											
USH2A	7399	broad.mit.edu	37	chr1	216595739	216595739	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaataatcaggcccacgCcacttgccagcaatactttg	6	12	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216595739	A	A	216595739	1	1	71	0	1	0	0	0	0	0	0	0	17162	754	26	3		3	USH2A	1	216595739	5'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	608522	216595739	32654882	110	78552											
EPRS	2058	broad.mit.edu	37	chr1	220154103	220154103	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aataactttttatacctcttCcgctgcctcttccatggtag	5	12	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220154103	T	T	220154103	3	4	71	1	0	0	0	0	1	0	0	0	5233	864	30	4	1020	4	EPRS	1	220154103	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3558364	220154103	29096518	111	78553											
HHIPL2	79802	broad.mit.edu	37	chr1	222717114	222717114	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctccaggcgactcccatCagggaggtagacccacacca	10	15	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222717114	A	A	222717114	3	1	71	1	0	0	0	0	1	0	0	0	7161	826	29	3	1467	3	HHIPL2	1	222717114	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2563011	222717114	26533507	112	78554											
HHIPL2	79802	broad.mit.edu	37	chr1	222717205	222717205	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accatggagacggggttcctCagcccgttggccacctcgct	12	15	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222717205	G	G	222717205	2	3	71	1	0	0	0	0	0	0	0	1	7161	813	29	4		4	HHIPL2	1	222717205	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	91	222717205	26533416	113	78555											
SUSD4	55061	broad.mit.edu	37	chr1	223396608	223396608	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccatctgcaatgtcgatgCctgggctggtggatgccacc	12	12	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223396608	T	T	223396608	3	4	71	1	0	0	0	0	1	0	0	0	15528	739	26	4	53	4	SUSD4	1	223396608	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	679403	223396608	25854013	114	78556											
LEFTY1	10637	broad.mit.edu	37	chr1	226108457	226108457	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagccccaagacaaacgcttCccaactagtacttcccaact	5	16	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226108457	A	A	226108457	1	1	71	0	1	0	0	0	0	0	0	0	8787	870	30	3		3	LEFTY1	1	226108457	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2711849	226108457	23142164	115	78557											
CDC42BPA	8476	broad.mit.edu	37	chr1	227192648	227192649	+	Intron	DNP	GG	AA	AA													gacaggaggggagggagctgGgggtcaccctgtctcagagg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	227192649	AA	AA	227192648	1	1	71	0	1	0	0	0	0	0	0	0	3102	1247	43	4		4	CDC42BPA	1	227192648	Intron	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	1084191	227192648	22057973	116	78558											
WNT3A	89780	broad.mit.edu	37	chr1	228247951	228247951	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaccagccacctcatccCcaaccccctgtaaggttcca	5	21	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228247951	A	A	228247951	1	1	71	0	1	0	0	0	0	0	0	0	17516	638	22	2		2	WNT3A	1	228247951	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1055303	228247951	21002670	117	78559											
OBSCN	84033	broad.mit.edu	37	chr1	228444664	228444664	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggagagtgactttgtgtgGaggtgatgatgagactggct	17	3	0	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228444664	T	T	228444664	1	4	71	0	1	0	0	0	0	0	0	0	10907	1189	41	3		3	OBSCN	1	228444664	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	196713	228444664	20805957	118	78560											
NUP133	55746	broad.mit.edu	37	chr1	229636557	229636557	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagaaagagccactaagtcGgcactccagtggaaatcact	9	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229636557	A	A	229636557	2	1	71	1	0	0	0	0	0	0	0	1	10849	1103	39	4		4	NUP133	1	229636557	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1191893	229636557	19614064	119	78561											
SIPA1L2	57568	broad.mit.edu	37	chr1	232564191	232564191	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccactaaggggctgtcaGgaagcatcaatttcagaaaa	9	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232564191	A	A	232564191	3	1	71	1	0	0	0	0	1	0	0	0	14443	1000	35	4	820	4	SIPA1L2	1	232564191	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2927634	232564191	16686430	120	78562											
NID1	4811	broad.mit.edu	37	chr1	236192968	236192968	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcaggtgcccatgctcatcGatgccgctgaaccgctgctt	11	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236192968	T	T	236192968	2	4	71	1	0	0	0	0	0	0	0	1	10509	1048	37	3		3	NID1	1	236192968	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3628777	236192968	13057653	121	78563											
NID1	4811	broad.mit.edu	37	chr1	236195567	236195567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaactacaggatgccctGtctacagacaaaaaggagca	9	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236195567	T	T	236195567	1	4	71	0	1	0	0	0	0	0	0	0	10509	1392	48	3		3	NID1	1	236195567	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2599	236195567	13055054	122	78564											
MTR	4548	broad.mit.edu	37	chr1	236990306	236990306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttccaaaatttgtatGttgaagttctaacccctact	5	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236990306	T	T	236990306	1	4	71	0	1	0	0	0	0	0	0	0	10052	1392	48	3		3	MTR	1	236990306	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	794739	236990306	12260315	123	78565											
RYR2	6262	broad.mit.edu	37	chr1	237777471	237777471	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgtgcagccatgtggaTgaacctcagctcctctatgc	10	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237777471	C	C	237777471	2	2	71	1	0	0	0	0	0	0	0	1	13880	1461	51	5		5	RYR2	1	237777471	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	787165	237777471	11473150	124	78566											
RYR2	6262	broad.mit.edu	37	chr1	237841363	237841363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagatggtggcagcagagGcaaaggagaacatttccctt	12	8	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237841363	T	T	237841363	3	4	71	1	0	0	0	0	1	0	0	0	13880	1203	42	3	9088	3	RYR2	1	237841363	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	63892	237841363	11409258	125	78567											
RYR2	6262	broad.mit.edu	37	chr1	237947190	237947190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccataagcactacacgCagtcagaaacggaatttctt	8	10	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237947190	A	A	237947190	3	1	71	1	0	0	0	0	1	0	0	0	13880	711	25	3	12536	3	RYR2	1	237947190	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	105827	237947190	11303431	126	78568											
SMYD3	64754	broad.mit.edu	37	chr1	246078796	246078796	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatcattgagattttgcCgtggaggtgtttcaatctgg	13	5	3	2	rs115624121	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246078796	A	A	246078796	1	1	71	0	1	0	0	0	0	0	0	0	14937	667	23	1		1	SMYD3	1	246078796	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	8131606	246078796	3171825	127	78569											
ZNF124	7678	broad.mit.edu	37	chr1	247319842	247319842	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtgactgttcatgtttttGacaaaaactgtagtgattaa	8	4	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247319842	C	C	247319842	1	2	71	0	1	0	0	0	0	0	0	0	17846	1305	45	4		4	ZNF124	1	247319842	3'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1241046	247319842	1930779	128	78570											
OR2B11	127623	broad.mit.edu	37	chr1	247615290	247615290	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcacttttcatgttgcGgcattttctggcacttgtgg	11	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247615290	C	C	247615290	1	2	71	0	1	0	0	0	0	0	0	0	11082	1131	39	4		4	OR2B11	1	247615290	5'Flank	SNP	G	TCGA-17-Z042-01A-01W-0746-08	295448	247615290	1635331	129	78571											
OR2B11	127623	broad.mit.edu	37	chr1	247618034	247618034	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcccaccacaatgttgcatCgttgcaggcacgcactgtct	8	14	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247618034	A	A	247618034	1	1	71	0	1	0	0	0	0	0	0	0	11082	899	31	3		3	OR2B11	1	247618034	5'Flank	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2744	247618034	1632587	130	78572											
OR2C3	81472	broad.mit.edu	37	chr1	247695823	247695823	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttccatcattgtatgctgGgggtggggcaaaaggccacc	13	9	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247695823	A	A	247695823	1	1	71	0	1	0	0	0	0	0	0	0	11087	1247	43	4		4	OR2C3	1	247695823	5'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	77789	247695823	1554798	131	78573											
TRIM58	25893	broad.mit.edu	37	chr1	248039404	248039404	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggagaaggagcagagtgGggtttaggggtctgtcaaga	20	3	2	3	rs142321693	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248039404	A	A	248039404	4	1	71	1	0	0	0	0	0	1	0	0	16656	1241	43	4	1096	4	TRIM58	1	248039404	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	343581	248039404	1211217	132	78574											
OR2L13	284521	broad.mit.edu	37	chr1	248138311	248138311	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttctgtttggaaacaagtCtatttccttcattgggtgtg	9	6	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248138311	A	A	248138311	1	1	71	0	1	0	0	0	0	0	0	0	11100	928	32	3		3	OR2L13	1	248138311	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	98907	248138311	1112310	133	78575											
OR2M5	127059	broad.mit.edu	37	chr1	248308513	248308513	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaatcttcaatcacagcCccacccacaccttcctcttc	4	18	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248308513	T	T	248308513	3	4	71	1	0	0	0	0	1	0	0	0	11107	623	22	4	66	4	OR2M5	1	248308513	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	170202	248308513	942108	134	78576											
OR2M3	127062	broad.mit.edu	37	chr1	248367276	248367276	+	Missense_Mutation	SNP	A	G	G													aggtgaccagagcattcatgAagatcttaggaaagggcaag							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248367276	G	G	248367276	3	3	71	1	0	0	0	0	1	0	0	0	11105	247	9	5	909	5	OR2M3	1	248367276	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	58763	248367276	883345	135	78577	358	2									
OR2M3	127062	broad.mit.edu	37	chr1	248367278	248367278	+	Missense_Mutation	SNP	G	T	T													gtgaccagagcattcatgaaGatcttaggaaagggcaagtc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248367278	T	T	248367278	3	4	71	1	0	0	0	0	1	0	0	0	11105	933	33	3	911	3	OR2M3	1	248367278	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2	248367278	883343	136	78578	358	2									
OR2T4	127074	broad.mit.edu	37	chr1	248525230	248525230	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccaagatgctcctggaCcaggtcatgggtgtgaataa	13	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248525230	G	G	248525230	3	3	71	1	0	0	0	0	1	0	0	0	11121	506	18	4	350	4	OR2T4	1	248525230	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	157952	248525230	725391	137	78579											
TPO	7173	broad.mit.edu	37	chr2	1488506	1488506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagccgccttccgcttcGgccatgccacgatccacccg	8	21	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1488506	T	T	1488506	3	4	71	1	0	0	0	0	1	0	0	0	16534	1116	39	1	1507	1	TPO	2	1488506	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08		1488506	241710867	138	78580											
NBAS	51594	broad.mit.edu	37	chr2	15432849	15432849	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttcgtgctcatgtcgagtCacatgcctggtgaccatctt	10	12	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15432849	A	A	15432849	2	1	71	1	0	0	0	0	0	0	0	1	10280	813	29	3		3	NBAS	2	15432849	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	13944343	15432849	227766524	139	78581											
NT5C1B	93034	broad.mit.edu	37	chr2	18768732	18768732	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccattatgctttctgctcCttaatttcctcacctctgct	3	14	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18768732	T	T	18768732	1	4	71	0	1	0	0	0	0	0	0	0	10781	696	24	4		4	NT5C1B	2	18768732	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3335883	18768732	224430641	140	78582											
DNMT3A	1788	broad.mit.edu	37	chr2	25463556	25463556	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatggagaggtcattgcagGgactgcccccaatcaccaga	12	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25463556	A	A	25463556	3	1	71	1	0	0	0	0	1	0	0	0	4716	1232	43	4	636	4	DNMT3A	2	25463556	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6694824	25463556	217735817	141	78583											
DPYSL5	56896	broad.mit.edu	37	chr2	27157803	27157803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatatggagtgagatcttcTgaagtataagagtgaagagc	13	3	2	6			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27157803	A	A	27157803	1	1	71	0	1	0	0	0	0	0	0	0	4790	1595	55	5		5	DPYSL5	2	27157803	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1694247	27157803	216041570	142	78584											
C2orf16	84226	broad.mit.edu	37	chr2	27804470	27804470	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagtccctcccagaggagCcatcgcggtccctcagagag	12	16	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27804470	T	T	27804470	2	4	71	1	0	0	0	0	0	0	0	1	2179	738	26	4		4	C2orf16	2	27804470	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	646667	27804470	215394903	143	78585											
SLC8A1	6546	broad.mit.edu	37	chr2	40366585	40366585	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaacacgactgcagtcacaGaatctttcaggccaatggtg	10	11	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40366585	C	C	40366585	3	2	71	1	0	0	0	0	1	0	0	0	14820	942	33	4	428	4	SLC8A1	2	40366585	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	12562115	40366585	202832788	144	78586											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44016839	44016839	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attggacttaatcagcatacCcatcacaggtgacaccttac	6	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44016839	G	G	44016839	3	3	71	1	0	0	0	0	1	0	0	0	4887	623	22	4	317	4	DYNC2LI1	2	44016839	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3650254	44016839	199182534	145	78587											
SLC3A1	6519	broad.mit.edu	37	chr2	44513056	44513056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgctgctctctgtagaaGgaaaactctcaggatttaca	8	10	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44513056	T	T	44513056	1	4	71	0	1	0	0	0	0	0	0	0	14740	1015	35	2		2	SLC3A1	2	44513056	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	496217	44513056	198686317	146	78588											
NRXN1	9378	broad.mit.edu	37	chr2	50758512	50758512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcctccgtatgcatgaCtacggggagctgaattttca	10	11	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50758512	A	A	50758512	3	1	71	1	0	0	0	0	1	0	0	0	10760	565	20	3	2638	3	NRXN1	2	50758512	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6245456	50758512	192440861	147	78589											
MTIF2	4528	broad.mit.edu	37	chr2	55481789	55481789	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatatacagttaagttttaCcttcttacagcatctttatt	4	7	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55481789	A	A	55481789	5	1	71	1	0	0	0	0	0	0	1	0	10028	521	18	3	1723	3	MTIF2	2	55481789	Splice_Site	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4723277	55481789	187717584	148	78590											
WDR92	116143	broad.mit.edu	37	chr2	68358622	68358622	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgcataaatcttagcttTcaccattttatttttataca	4	8	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68358622	C	C	68358622	1	2	71	0	1	0	0	0	0	0	0	0	17466	1798	62	5		5	WDR92	2	68358622	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	12876833	68358622	174840751	149	78591											
DYSF	8291	broad.mit.edu	37	chr2	71740791	71740791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctgggtcccaggggcaGgggcaggggcagggccagag	23	9	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71740791	T	T	71740791	1	4	71	0	1	0	0	0	0	0	0	0	4899	1015	35	2		2	DYSF	2	71740791	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3382169	71740791	171458582	150	78592											
DYSF	8291	broad.mit.edu	37	chr2	71747322	71747322	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagatggacgtgggcacCatttacagagagccccgtga	13	10	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71747322	A	A	71747322	2	1	71	1	0	0	0	0	0	0	0	1	4899	581	21	2		2	DYSF	2	71747322	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6531	71747322	171452051	151	78593											
CYP26B1	56603	broad.mit.edu	37	chr2	72359591	72359591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggtccggacaccgccaCcgaacgggaggtaatggaag	16	11	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72359591	A	A	72359591	3	1	71	1	0	0	0	0	1	0	0	0	4189	507	18	3	238	3	CYP26B1	2	72359591	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	612269	72359591	170839782	152	78594											
CCT7	10574	broad.mit.edu	37	chr2	73477352	73477352	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagagcagctgctgagtgtTgggggggctggcagtgagga	20	5	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73477352	G	G	73477352	1	3	71	0	1	0	0	0	0	0	0	0	2989	1827	63	5		5	CCT7	2	73477352	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1117761	73477352	169722021	153	78595											
AUP1	550	broad.mit.edu	37	chr2	74755625	74755625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggccaggaactagaagaGgaaggagaaagtaggatggg	17	3	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74755625	T	T	74755625	1	4	71	0	1	0	0	0	0	0	0	0	1225	1015	35	2		2	AUP1	2	74755625	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1278273	74755625	168443748	154	78596											
SEMA4F	10505	broad.mit.edu	37	chr2	74900622	74900622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgtgaaaaactacctgGggacggagccaattatcacc	9	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74900622	T	T	74900622	3	4	71	1	0	0	0	0	1	0	0	0	14148	1232	43	2	611	2	SEMA4F	2	74900622	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	144997	74900622	168298751	155	78597											
LRRTM4	80059	broad.mit.edu	37	chr2	77748824	77748824	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccaaaaacgtttccccCctctctcagctttcttctta	2	16	5	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77748824	A	A	77748824	1	1	71	0	1	0	0	0	0	0	0	0	9129	638	22	2		2	LRRTM4	2	77748824	5'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2848202	77748824	165450549	156	78598											
REG1A	5967	broad.mit.edu	37	chr2	79349191	79349191	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgcctttgtggcctcactGattaaggagagtggcactga	14	8	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79349191	A	A	79349191	2	1	71	1	0	0	0	0	0	0	0	1	13318	1277	45	4		4	REG1A	2	79349191	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1600367	79349191	163850182	157	78599											
REG3A	5068	broad.mit.edu	37	chr2	79386643	79386643	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccttctctagtcccctagGactaaagtgatcttggtcac	7	12	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79386643	T	T	79386643	1	4	71	0	1	0	0	0	0	0	0	0	13320	1189	41	3		3	REG3A	2	79386643	5'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	37452	79386643	163812730	158	78600											
SFTPB	6439	broad.mit.edu	37	chr2	85892392	85892392	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgtgctcctgggctctgTgaggccctggatgcctcacc	14	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85892392	C	C	85892392	1	2	71	0	1	0	0	0	0	0	0	0	14304	1711	59	5		5	SFTPB	2	85892392	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	6505749	85892392	157306981	159	78601											
MAL	4118	broad.mit.edu	37	chr2	95719286	95719286	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttttagaaaacagaaatGcccttgatggtggaaaaaag	9	5	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95719286	T	T	95719286	1	4	71	0	1	0	0	0	0	0	0	0	9291	1334	46	3		3	MAL	2	95719286	3'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9826894	95719286	147480087	160	78602											
VWA3B	200403	broad.mit.edu	37	chr2	98828373	98828373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggattcaagtgtgtccttGgtgtctcttttttccgtaga	11	7	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98828373	T	T	98828373	1	4	71	0	1	0	0	0	0	0	0	0	17368	1363	47	2		2	VWA3B	2	98828373	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3109087	98828373	144371000	161	78603											
MAP4K4	9448	broad.mit.edu	37	chr2	102501757	102501757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggcctttaaggtaacaaCatcaagtgaatttaaaagta	7	5	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102501757	A	A	102501757	1	1	71	0	1	0	0	0	0	0	0	0	9354	493	17	3		3	MAP4K4	2	102501757	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3673384	102501757	140697616	162	78604											
IL1R2	7850	broad.mit.edu	37	chr2	102636071	102636071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgtatattggtataatGtcaacttaaaaaaacatttt	6	3	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102636071	T	T	102636071	1	4	71	0	1	0	0	0	0	0	0	0	7729	1392	48	3		3	IL1R2	2	102636071	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	134314	102636071	140563302	163	78605											
IL18RAP	8807	broad.mit.edu	37	chr2	103061716	103061716	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaaaaagtcactcagcgtGatcttcgcaggaagtttgtt	11	7	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103061716	T	T	103061716	3	4	71	1	0	0	0	0	1	0	0	0	7718	1290	45	3	1014	3	IL18RAP	2	103061716	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	425645	103061716	140137657	164	78606											
RGPD4	285190	broad.mit.edu	37	chr2	108487652	108487652	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagttctgtattcacagggGgtaaaactatttagatttga	9	4	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108487652	T	T	108487652	2	4	71	1	0	0	0	0	0	0	0	1	13396	1219	43	2		2	RGPD4	2	108487652	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5425936	108487652	134711721	165	78607											
SLC5A7	60482	broad.mit.edu	37	chr2	108614427	108614427	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcgttcagctcttttgCatttttgtagggctggtaag	12	6	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108614427	A	A	108614427	4	1	71	1	0	0	0	0	0	1	0	0	14784	718	25	3	596	3	SLC5A7	2	108614427	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	126775	108614427	134584946	166	78608											
SULT1C3	442038	broad.mit.edu	37	chr2	108871922	108871922	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataactaatgtatctaatgcTataaacttataggatatggt	6	4	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108871922	C	C	108871922	1	2	71	0	1	0	0	0	0	0	0	0	15496	1537	53	5		5	SULT1C3	2	108871922	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	257495	108871922	134327451	167	78609											
EDAR	10913	broad.mit.edu	37	chr2	109524265	109524265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagttttagtcttgcggcTgtgagggagccacatctcac	12	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109524265	A	A	109524265	1	1	71	0	1	0	0	0	0	0	0	0	4945	1595	55	5		5	EDAR	2	109524265	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	652343	109524265	133675108	168	78610											
FBLN7	129804	broad.mit.edu	37	chr2	112933262	112933262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacctagaactcacatccGtatatttgaaaattatttat	4	7	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112933262	T	T	112933262	1	4	71	0	1	0	0	0	0	0	0	0	5758	1160	40	3		3	FBLN7	2	112933262	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3408997	112933262	130266111	169	78611											
SLC20A1	6574	broad.mit.edu	37	chr2	113417209	113417209	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagatgggtctaggtgacAgaaaaggaagtaatggctct	14	5	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113417209	G	G	113417209	3	3	71	1	0	0	0	0	1	0	0	0	14551	180	7	5	1503	5	SLC20A1	2	113417209	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	483947	113417209	129782164	170	78612											
IL1B	3553	broad.mit.edu	37	chr2	113596233	113596233	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgccaccttcctcagagCctgtctttcttccttccttc	4	17	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113596233	A	A	113596233	1	1	71	0	1	0	0	0	0	0	0	0	7721	754	26	3		3	IL1B	2	113596233	5'Flank	SNP	C	TCGA-17-Z042-01A-01W-0746-08	179024	113596233	129603140	171	78613											
STEAP3	55240	broad.mit.edu	37	chr2	120003651	120003651	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccagcatgctctttttgatAtgttatcataactaatcctg	6	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120003651	T	T	120003651	1	4	71	0	1	0	0	0	0	0	0	0	15397	464	16	5		5	STEAP3	2	120003651	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	6407418	120003651	123195722	172	78614											
SMPD4	55627	broad.mit.edu	37	chr2	130911008	130911008	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgagtgtgaactgcctgaGctgcgcttcgctgagctgcc	15	12	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130911008	A	A	130911008	3	1	71	1	0	0	0	0	1	0	0	0	14921	971	34	4	586	4	SMPD4	2	130911008	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	10907357	130911008	112288365	173	78615											
TUBA3E	112714	broad.mit.edu	37	chr2	130951699	130951699	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catcaaatcgcagggaggccGtgatggaggacacgatctgc	14	10	2	1	rs148691540		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130951699	C	C	130951699	3	2	71	1	0	0	0	0	1	0	0	0	16874	1145	40	4	644	4	TUBA3E	2	130951699	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	40691	130951699	112247674	174	78616											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110505	132110505	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatccttgggggaatgttgCcaagcacggggcttggggca	16	10	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132110505	T	T	132110505	1	4	71	0	1	0	0	0	0	0	0	0	12160	754	26	4		4	PLEKHB2	2	132110505	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1158806	132110505	111088868	175	78617											
THSD7B	80731	broad.mit.edu	37	chr2	138378217	138378217	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaatgagcattccctgCttggtggaatgcgtggtcaa	13	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138378217	A	A	138378217	4	1	71	1	0	0	0	0	0	1	0	0	16003	805	28	3	3706	3	THSD7B	2	138378217	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6267712	138378217	104821156	176	78618											
LRP1B	53353	broad.mit.edu	37	chr2	141283517	141283517	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattacatcttatgaaccctGtggttttcactccaagctta	5	10	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141283517	T	T	141283517	3	4	71	1	0	0	0	0	1	0	0	0	9042	1377	48	3	6049	3	LRP1B	2	141283517	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2905300	141283517	101915856	177	78619											
LRP1B	53353	broad.mit.edu	37	chr2	141291477	141291477	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agcatttaccaaagtgtgatCcatagatgttactaggtgtt	9	6	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141291477	G	G	141291477	1	3	71	0	1	0	0	0	0	0	0	0	9042	870	30	4		4	LRP1B	2	141291477	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7960	141291477	101907896	178	78620											
LRP1B	53353	broad.mit.edu	37	chr2	141625180	141625180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggctggcgactgggatGgtatatctgaaggtcaaatg	15	6	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141625180	T	T	141625180	3	4	71	1	0	0	0	0	1	0	0	0	9042	1348	47	2	9501	2	LRP1B	2	141625180	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	333703	141625180	101574193	179	78621											
LRP1B	53353	broad.mit.edu	37	chr2	141641525	141641525	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatatgtttcctgctatccAgtcgactgtcaggccttctg	9	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141641525	T	T	141641525	3	4	71	1	0	0	0	0	1	0	0	0	9042	188	7	5	10037	5	LRP1B	2	141641525	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	16345	141641525	101557848	180	78622											
LRP1B	53353	broad.mit.edu	37	chr2	141806485	141806485	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttaaagctagtctgacacAcactggatttatccttttaa	7	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141806485	T	T	141806485	1	4	71	0	1	0	0	0	0	0	0	0	9042	174	6	5		5	LRP1B	2	141806485	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	164960	141806485	101392888	181	78623											
LRP1B	53353	broad.mit.edu	37	chr2	141819716	141819716	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acccagtaaaccaatttgttGactaggtctagtgccagtgc	9	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141819716	T	T	141819716	2	4	71	1	0	0	0	0	0	0	0	1	9042	1277	45	3		3	LRP1B	2	141819716	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	13231	141819716	101379657	182	78624											
KYNU	8942	broad.mit.edu	37	chr2	143798074	143798074	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctggaatacctgatcaaGcataactatggcaaagataa	7	7	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143798074	A	A	143798074	2	1	71	1	0	0	0	0	0	0	0	1	8659	962	34	4		4	KYNU	2	143798074	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1978358	143798074	99401299	183	78625											
ZEB2	9839	broad.mit.edu	37	chr2	145268432	145268432	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttactgggagagacacaGcggatcagatatgaaaggca	13	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145268432	A	A	145268432	1	1	71	0	1	0	0	0	0	0	0	0	17750	986	34	4		4	ZEB2	2	145268432	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1470358	145268432	97930941	184	78626											
MMADHC	27249	broad.mit.edu	37	chr2	150426500	150426500	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttctgctaatttccactTaatttcttcataatatggct	3	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150426500	A	A	150426500	3	1	71	1	0	0	0	0	1	0	0	0	9735	1751	61	5	15	5	MMADHC	2	150426500	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	5158068	150426500	92772873	185	78627											
KCNJ3	3760	broad.mit.edu	37	chr2	155555855	155555855	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgtcccagcccaagaagCgcgccgagaccctcatgttc	10	15	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155555855	T	T	155555855	3	4	71	1	0	0	0	0	1	0	0	0	8122	768	27	4	570	4	KCNJ3	2	155555855	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5129355	155555855	87643518	186	78628											
PLA2R1	22925	broad.mit.edu	37	chr2	160833972	160833972	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttaatgatgatccccccaCaaagtttcaaaagatcaaaa	4	11	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160833972	G	G	160833972	1	3	71	0	1	0	0	0	0	0	0	0	12105	493	17	4		4	PLA2R1	2	160833972	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5278117	160833972	82365401	187	78629											
TANK	10010	broad.mit.edu	37	chr2	162087711	162087711	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttcttacatagcactccAgagagacccggcatccttag	7	13	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162087711	G	G	162087711	2	3	71	1	0	0	0	0	0	0	0	1	15665	175	7	5		5	TANK	2	162087711	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1253739	162087711	81111662	188	78630											
GRB14	2888	broad.mit.edu	37	chr2	165365355	165365355	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctgaaaaactgcaaatgcCgcggttccttaaaaaaaaaa	7	9	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165365355	G	G	165365355	3	3	71	1	0	0	0	0	1	0	0	0	6823	652	23	4	830	4	GRB14	2	165365355	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3277644	165365355	77834018	189	78631											
SCN9A	6335	broad.mit.edu	37	chr2	167168245	167168245	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacaaagctctgaggtcCtgggggaggcaacattgcca	14	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167168245	A	A	167168245	4	1	71	1	0	0	0	0	0	1	0	0	14038	690	24	2	6015	2	SCN9A	2	167168245	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1802890	167168245	76031128	190	78632											
SCN7A	6332	broad.mit.edu	37	chr2	167262666	167262666	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccatgacaacaacaatGtacatatttacaatgatcag	4	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167262666	T	T	167262666	4	4	71	1	0	0	0	0	0	1	0	0	14036	1372	48	3	579	3	SCN7A	2	167262666	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	94421	167262666	75936707	191	78633											
XIRP2	129446	broad.mit.edu	37	chr2	168102985	168102985	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatgactatctattgtcttCttcatgaaaatgatggtgac	7	7	4	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168102985	A	A	168102985	3	1	71	1	0	0	0	0	1	0	0	0	17557	913	32	3	5113	3	XIRP2	2	168102985	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	840319	168102985	75096388	192	78634											
LRP2	4036	broad.mit.edu	37	chr2	169995243	169995243	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaagtaaccaaaacagtgtCttgttatttaaaacaacaac	5	7	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169995243	A	A	169995243	1	1	71	0	1	0	0	0	0	0	0	0	9043	928	32	3		3	LRP2	2	169995243	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1892258	169995243	73204130	193	78635											
DCAF17	80067	broad.mit.edu	37	chr2	172309702	172309702	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctacctttttcacttgtaggGattctagagatcaacaaaaa	6	8	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172309702	T	T	172309702	2	4	71	1	0	0	0	0	0	0	0	1	4302	1161	41	3		3	DCAF17	2	172309702	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2314459	172309702	70889671	194	78636											
PDK1	5163	broad.mit.edu	37	chr2	173423610	173423610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtgtttgcaatttgatGgagttgtggactttattcaa	10	4	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173423610	T	T	173423610	1	4	71	0	1	0	0	0	0	0	0	0	11769	1363	47	2		2	PDK1	2	173423610	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1113908	173423610	69775763	195	78637											
ZAK	51776	broad.mit.edu	37	chr2	174086040	174086040	+	Intron	DEL	G	-	-													ccatgatgctgatgggctttGgggatatcttctcaatgaac							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	174086040	-	-	174086040	6	5	71	0	1	1	0	1	0	0	0	0	17639	1348	47	0		0	ZAK	2	174086040	Intron	DEL	G	TCGA-17-Z042-01A-01W-0746-08	662430	174086040	69113333	196	78638											
TTN	7273	broad.mit.edu	37	chr2	179575439	179575439	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtatattgtccagaatctCctttgtctactttgaggact	8	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179575439	T	T	179575439	3	4	71	1	0	0	0	0	1	0	0	0	16861	855	30	4	76204	4	TTN	2	179575439	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5489399	179575439	63623934	197	78639											
TTN	7273	broad.mit.edu	37	chr2	179581898	179581898	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgtactgcccggcatcGcctttgcctactttgagaac	10	13	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179581898	A	A	179581898	2	1	71	1	0	0	0	0	0	0	0	1	16861	1074	38	4		4	TTN	2	179581898	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6459	179581898	63617475	198	78640											
TTN	7273	broad.mit.edu	37	chr2	179596851	179596851	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcattttgggcctcacaCatatattcaccactgtcttc	5	14	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179596851	T	T	179596851	3	4	71	1	0	0	0	0	1	0	0	0	16861	478	17	4	87908	4	TTN	2	179596851	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	14953	179596851	63602522	199	78641											
GULP1	51454	broad.mit.edu	37	chr2	189447139	189447139	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctctttctggcgtagtaaTggtgattcatctccctgtct	8	11	5	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189447139	A	A	189447139	1	1	71	0	1	0	0	0	0	0	0	0	6966	1479	51	5		5	GULP1	2	189447139	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	9850288	189447139	53752234	200	78642											
COL3A1	1281	broad.mit.edu	37	chr2	189875505	189875505	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattgcatacatggatcaGgccagtggaaatgtaaagaa	11	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189875505	T	T	189875505	3	4	71	1	0	0	0	0	1	0	0	0	3720	991	35	2	4341	2	COL3A1	2	189875505	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	428366	189875505	53323868	201	78643											
SLC40A1	30061	broad.mit.edu	37	chr2	190430409	190430409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaatacaaagctgtaaaCcaagagtatagattcctaaa	5	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190430409	A	A	190430409	1	1	71	0	1	0	0	0	0	0	0	0	14742	522	18	3		3	SLC40A1	2	190430409	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	554904	190430409	52768964	202	78644											
RFTN2	130132	broad.mit.edu	37	chr2	198508925	198508925	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtcatttgtttgtgcctcaGaagttaggggacattcctca	10	9	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198508925	T	T	198508925	3	4	71	1	0	0	0	0	1	0	0	0	13367	942	33	3	1138	3	RFTN2	2	198508925	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8078516	198508925	44690448	203	78645											
AOX1	316	broad.mit.edu	37	chr2	201474149	201474149	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcaaaaggtaagtgacagCccctacttggagattattaa	8	7	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201474149	A	A	201474149	1	1	71	0	1	0	0	0	0	0	0	0	731	754	26	3		3	AOX1	2	201474149	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2965224	201474149	41725224	204	78646											
AOX1	316	broad.mit.edu	37	chr2	201499527	201499527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacaggtgaaatacatatGggaggtcaagaacattttta	10	4	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201499527	T	T	201499527	3	4	71	1	0	0	0	0	1	0	0	0	731	1348	47	2	2317	2	AOX1	2	201499527	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	25378	201499527	41699846	205	78647											
PARD3B	117583	broad.mit.edu	37	chr2	206265804	206265804	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactctgaaacatggtggcCtgagagaagaagagctggag	15	6	1	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206265804	T	T	206265804	2	4	71	1	0	0	0	0	0	0	0	1	11538	680	24	4		4	PARD3B	2	206265804	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4766277	206265804	36933569	206	78648											
CRYGC	1420	broad.mit.edu	37	chr2	208992953	208992953	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatccaccactctccgcaAagagcctgccttagcatcca	5	17	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208992953	T	T	208992953	3	4	71	1	0	0	0	0	1	0	0	0	3948	11	1	5	29	5	CRYGC	2	208992953	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2727149	208992953	34206420	207	78649											
PIKFYVE	200576	broad.mit.edu	37	chr2	209204748	209204748	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttagatgtgtttgatggGcatttgctgggatccacaga	12	5	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209204748	T	T	209204748	2	4	71	1	0	0	0	0	0	0	0	1	12019	1190	42	3		3	PIKFYVE	2	209204748	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	211795	209204748	33994625	208	78650											
MYL1	4632	broad.mit.edu	37	chr2	211179685	211179685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggtttggctggggcagGggcaggtgcaggtgccggtg	22	6	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211179685	T	T	211179685	3	4	71	1	0	0	0	0	1	0	0	0	10137	1232	43	2	562	2	MYL1	2	211179685	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1974937	211179685	32019688	209	78651											
CPS1	1373	broad.mit.edu	37	chr2	211464127	211464127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaactgttctgatgaaccCaaacattgcatcagtccaga	6	11	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211464127	A	A	211464127	3	1	71	1	0	0	0	0	1	0	0	0	3855	594	21	2	1467	2	CPS1	2	211464127	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	284442	211464127	31735246	210	78652											
ERBB4	2066	broad.mit.edu	37	chr2	212248320	212248320	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggtgtgtctctccacCtaaaaaaccacaactgagct	8	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212248320	A	A	212248320	1	1	71	0	1	0	0	0	0	0	0	0	5251	696	24	2		2	ERBB4	2	212248320	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	784193	212248320	30951053	211	78653											
SPAG16	79582	broad.mit.edu	37	chr2	214727368	214727368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtcagtgcacaggacCcctagaaatagcctaatctc	8	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214727368	A	A	214727368	1	1	71	0	1	0	0	0	0	0	0	0	15094	638	22	2		2	SPAG16	2	214727368	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2479048	214727368	28472005	212	78654											
TNS1	7145	broad.mit.edu	37	chr2	218673558	218673558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgttgacactggtgaCccaagcaatgtacagagaca	11	9	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218673558	A	A	218673558	1	1	71	0	1	0	0	0	0	0	0	0	16466	522	18	3		3	TNS1	2	218673558	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3946190	218673558	24525815	213	78655											
PLCD4	84812	broad.mit.edu	37	chr2	219487513	219487513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgactctgctggaatttttGgatttcctccaagaggagca	10	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219487513	T	T	219487513	3	4	71	1	0	0	0	0	1	0	0	0	12128	1339	47	2	702	2	PLCD4	2	219487513	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	813955	219487513	23711860	214	78656											
PRKAG3	53632	broad.mit.edu	37	chr2	219695018	219695018	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttggtggagtgcccacccCggcaggatcagcttgagcca	14	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219695018	G	G	219695018	3	3	71	1	0	0	0	0	1	0	0	0	12608	652	23	4	1193	4	PRKAG3	2	219695018	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	207505	219695018	23504355	215	78657											
SPHKAP	80309	broad.mit.edu	37	chr2	228881496	228881496	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaagcagagttggcccActgcacatcctgctcgcagc	10	14	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228881496	G	G	228881496	2	3	71	1	0	0	0	0	0	0	0	1	15166	156	6	5		5	SPHKAP	2	228881496	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	9186478	228881496	14317877	216	78658											
ITM2C	81618	broad.mit.edu	37	chr2	231742646	231742646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttcctggccctcctgtGgctcaggctgaggctggtgg	14	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231742646	T	T	231742646	1	4	71	0	1	0	0	0	0	0	0	0	7984	1363	47	2		2	ITM2C	2	231742646	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2861150	231742646	11456727	217	78659											
ECEL1	9427	broad.mit.edu	37	chr2	233345520	233345520	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccgcacccacttctgatAggcctggggacacagagagc	11	15	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233345520	T	T	233345520	3	4	71	1	0	0	0	0	1	0	0	0	4931	420	15	5	280	5	ECEL1	2	233345520	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1602874	233345520	9853853	218	78660											
HJURP	55355	broad.mit.edu	37	chr2	234750380	234750380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaattttaaacctgtcttaCggcaagaaacatctaatacg	5	10	2	1	rs34042006	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234750380	A	A	234750380	3	1	71	1	0	0	0	0	1	0	0	0	7256	536	19	3	1208	3	HJURP	2	234750380	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1404860	234750380	8448993	219	78661											
HJURP	55355	broad.mit.edu	37	chr2	234761203	234761203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggcaataaaatttgacaCtaaatacctggatctctcct	5	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234761203	A	A	234761203	1	1	71	0	1	0	0	0	0	0	0	0	7256	580	20	3		3	HJURP	2	234761203	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10823	234761203	8438170	220	78662											
TRPM8	79054	broad.mit.edu	37	chr2	234854450	234854450	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagaaaaatatcatcatgtAtcttgactgataatacaatc	4	6	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234854450	T	T	234854450	1	4	71	0	1	0	0	0	0	0	0	0	16717	464	16	5		5	TRPM8	2	234854450	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	93247	234854450	8344923	221	78663											
COL6A3	1293	broad.mit.edu	37	chr2	238303320	238303320	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagtttcctactatgtcatGaagtgaggtaaaattctcta	7	6	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238303320	T	T	238303320	3	4	71	1	0	0	0	0	1	0	0	0	3733	1290	45	3	9129	3	COL6A3	2	238303320	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3448870	238303320	4896053	222	78664											
SUMF1	285362	broad.mit.edu	37	chr3	4403778	4403778	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttctgagaaaagcccaatGtaggtcagacacgactgctc	10	10	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4403778	A	A	4403778	1	1	71	0	1	0	0	0	0	0	0	0	15503	1392	48	4		4	SUMF1	3	4403778	3'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08		4403778	193618652	223	78665											
ATP2B2	491	broad.mit.edu	37	chr3	10385773	10385773	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctctctcacctcctccttGcctcagcctcgctccccttg	4	21	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10385773	C	C	10385773	1	2	71	0	1	0	0	0	0	0	0	0	1144	1334	46	4		4	ATP2B2	3	10385773	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5981995	10385773	187636657	224	78666											
SYN2	6854	broad.mit.edu	37	chr3	12209921	12209921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagatgtttggcggcctGgacatctgtgctgtcaaagc	13	9	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12209921	T	T	12209921	2	4	71	1	0	0	0	0	0	0	0	1	15560	1335	47	2		2	SYN2	3	12209921	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1824148	12209921	185812509	225	78667											
SYN2	6854	broad.mit.edu	37	chr3	12231936	12231936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcacgtcaccgtccttccCtgccttgctgggaacaccac	7	19	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12231936	A	A	12231936	1	1	71	0	1	0	0	0	0	0	0	0	15560	696	24	2		2	SYN2	3	12231936	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	22015	12231936	185790494	226	78668											
FGD5	152273	broad.mit.edu	37	chr3	14905647	14905647	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacccagcgcctacacagaGccctacaaagtctgtcccat	7	16	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14905647	A	A	14905647	2	1	71	1	0	0	0	0	0	0	0	1	5893	962	34	4		4	FGD5	3	14905647	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2673711	14905647	183116783	227	78669											
CAPN7	23473	broad.mit.edu	37	chr3	15282982	15282982	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggatgctaagcaaggaCctgtgaaagatgcctatagc	12	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15282982	T	T	15282982	3	4	71	1	0	0	0	0	1	0	0	0	2657	507	18	4	1733	4	CAPN7	3	15282982	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	377335	15282982	182739448	228	78670											
TBC1D5	9779	broad.mit.edu	37	chr3	17413737	17413737	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagtcatcagtgtttctttCccctaaaaacagaaaaattg	7	8	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17413737	A	A	17413737	2	1	71	1	0	0	0	0	0	0	0	1	15745	842	30	3		3	TBC1D5	3	17413737	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2130755	17413737	180608693	229	78671											
NR1D2	9975	broad.mit.edu	37	chr3	24006669	24006669	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgaggtaggttttatttatCctgaatattgatgcaggcag	11	4	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24006669	G	G	24006669	1	3	71	0	1	0	0	0	0	0	0	0	10711	870	30	4		4	NR1D2	3	24006669	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6592932	24006669	174015761	230	78672											
DLEC1	9940	broad.mit.edu	37	chr3	38159274	38159274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaagatgcattccctgcCtcctacctctgtggctgccc	8	16	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38159274	A	A	38159274	1	1	71	0	1	0	0	0	0	0	0	0	4592	696	24	2		2	DLEC1	3	38159274	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	14152605	38159274	159863156	231	78673											
SLC22A13	9390	broad.mit.edu	37	chr3	38316907	38316907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctgacccgtgggaggatgGacgaggcgatacaactgatc	14	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38316907	T	T	38316907	3	4	71	1	0	0	0	0	1	0	0	0	14557	1174	41	3	871	3	SLC22A13	3	38316907	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	157633	38316907	159705523	232	78674											
NME6	10201	broad.mit.edu	37	chr3	48337625	48337625	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacctggccatgaactccaCcagcctctgatagaaaaaac	7	13	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48337625	T	T	48337625	3	4	71	1	0	0	0	0	1	0	0	0	10590	507	18	4	355	4	NME6	3	48337625	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10020718	48337625	149684805	233	78675											
GNAI2	2771	broad.mit.edu	37	chr3	50289130	50289130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatgcagggcatcttcctGccagctctgcccagggcacc	11	15	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50289130	T	T	50289130	1	4	71	0	1	0	0	0	0	0	0	0	6569	1334	46	3		3	GNAI2	3	50289130	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1951505	50289130	147733300	234	78676											
ITIH4	3700	broad.mit.edu	37	chr3	52854649	52854649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaaccccacacccaccgCcttccatgggcttctcagca	5	20	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52854649	A	A	52854649	3	1	71	1	0	0	0	0	1	0	0	0	7976	739	26	3	1008	3	ITIH4	3	52854649	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2565519	52854649	145167781	235	78677											
ACTR8	93973	broad.mit.edu	37	chr3	53911340	53911340	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaagagagcccccagggccTgggtgaatatttaactgacc	12	10	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53911340	A	A	53911340	2	1	71	1	0	0	0	0	0	0	0	1	217	1567	55	5		5	ACTR8	3	53911340	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1056691	53911340	144111090	236	78678											
IL17RD	54756	broad.mit.edu	37	chr3	57168633	57168633	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacaagaagctgcaggctgAccaggctaaggcccgcaggt	13	13	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57168633	T	T	57168633	1	4	71	0	1	0	0	0	0	0	0	0	7712	290	10	5		5	IL17RD	3	57168633	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	3257293	57168633	140853797	237	78679											
DNAH12	201625	broad.mit.edu	37	chr3	57494913	57494913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcttcaagcgatttaaCtggtggtttcacaagaacgc	8	9	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57494913	A	A	57494913	3	1	71	1	0	0	0	0	1	0	0	0	4640	565	20	3	9041	3	DNAH12	3	57494913	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	326280	57494913	140527517	238	78680											
FAM107A	11170	broad.mit.edu	37	chr3	58552961	58552961	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctctgctgccgtctcaGcagctcctgctcaaaggggc	11	16	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58552961	A	A	58552961	2	1	71	1	0	0	0	0	0	0	0	1	5435	962	34	4		4	FAM107A	3	58552961	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1058048	58552961	139469469	239	78681											
C3orf67	200844	broad.mit.edu	37	chr3	58899744	58899744	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtaaacttatctctgtttTggcttaaaaactgacttgat	7	6	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58899744	A	A	58899744	1	1	71	0	1	0	0	0	0	0	0	0	2263	1827	63	5		5	C3orf67	3	58899744	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	346783	58899744	139122686	240	78682											
FAM19A4	151647	broad.mit.edu	37	chr3	68782208	68782208	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaatcctagacaattttCtgcaaaggggccatgatggg	11	8	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68782208	A	A	68782208	1	1	71	0	1	0	0	0	0	0	0	0	5581	928	32	3		3	FAM19A4	3	68782208	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	9882464	68782208	129240222	241	78683											
ROBO1	6091	broad.mit.edu	37	chr3	79174566	79174566	+	Intron	SNP	T	A	A													ggttgatggaggtggaggcaTttcaggaggaagttagtatt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79174566	A	A	79174566	1	1	71	0	1	0	0	0	0	0	0	0	13624	1508	52	5		5	ROBO1	3	79174566	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	10392358	79174566	118847864	242	78684	359	2									
ROBO1	6091	broad.mit.edu	37	chr3	79174569	79174569	+	Intron	SNP	C	T	T													tgatggaggtggaggcatttCaggaggaagttagtatttgg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79174569	T	T	79174569	1	4	71	0	1	0	0	0	0	0	0	0	13624	841	29	4		4	ROBO1	3	79174569	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3	79174569	118847861	243	78685	359	2									
ROBO1	6091	broad.mit.edu	37	chr3	79638887	79638887	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagaaaatgaacaaacttGatttgcaacacacacaataa	4	8	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79638887	T	T	79638887	1	4	71	0	1	0	0	0	0	0	0	0	13624	1305	45	3		3	ROBO1	3	79638887	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	464318	79638887	118383543	244	78686											
CADM2	253559	broad.mit.edu	37	chr3	85984933	85984933	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctagatacaccatcagttaaGattataccatcgactccttt	4	11	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85984933	T	T	85984933	3	4	71	1	0	0	0	0	1	0	0	0	2593	933	33	3	783	3	CADM2	3	85984933	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6346046	85984933	112037497	245	78687											
OR5K1	26339	broad.mit.edu	37	chr3	98189145	98189145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagctttttctacctgtgCatcccactttttgtcagttt	5	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98189145	A	A	98189145	3	1	71	1	0	0	0	0	1	0	0	0	11260	710	25	3	727	3	OR5K1	3	98189145	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	12204212	98189145	99833285	246	78688											
TMEM45A	55076	broad.mit.edu	37	chr3	100287930	100287930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttatcatcccataagacaGggtagcatagcagaacatta	7	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100287930	T	T	100287930	1	4	71	0	1	0	0	0	0	0	0	0	16292	1015	35	2		2	TMEM45A	3	100287930	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2098785	100287930	97734500	247	78689											
MYH15	22989	broad.mit.edu	37	chr3	108112926	108112926	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcattttgacactcctgCaccacctcttcagcttcttt	4	15	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108112926	A	A	108112926	2	1	71	1	0	0	0	0	0	0	0	1	10128	697	25	3		3	MYH15	3	108112926	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7824996	108112926	89909504	248	78690											
ATG3	64422	broad.mit.edu	37	chr3	112255264	112255264	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaagattctcaagtaaTaaatccatgaaatatacaat	4	5	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112255264	C	C	112255264	1	2	71	0	1	0	0	0	0	0	0	0	1099	1421	49	5		5	ATG3	3	112255264	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4142338	112255264	85767166	249	78691											
CCDC80	151887	broad.mit.edu	37	chr3	112358551	112358551	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaggctgaaggtttggttCctccagagtggatctctcaa	13	8	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112358551	A	A	112358551	4	1	71	1	0	0	0	0	0	1	0	0	2882	864	30	3	2678	3	CCDC80	3	112358551	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	103287	112358551	85663879	250	78692											
BOC	91653	broad.mit.edu	37	chr3	112992161	112992161	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggttgggagcgcccatgccGtagtccagctgcggacctcc	14	14	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112992161	C	C	112992161	3	2	71	1	0	0	0	0	1	0	0	0	1487	1145	40	4	1229	4	BOC	3	112992161	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	633610	112992161	85030269	251	78693											
GRAMD1C	54762	broad.mit.edu	37	chr3	113658766	113658766	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttgttgaatgtgacactGtttctgaagctgtcaaagat	10	5	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113658766	A	A	113658766	2	1	71	1	0	0	0	0	0	0	0	1	6815	1364	48	4		4	GRAMD1C	3	113658766	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	666605	113658766	84363664	252	78694											
CD86	942	broad.mit.edu	37	chr3	121838342	121838342	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagcgtgtttttaaaagttcGaagacatcttcatgcgacaa	8	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121838342	C	C	121838342	2	2	71	1	0	0	0	0	0	0	0	1	3073	1045	37	4		4	CD86	3	121838342	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8179576	121838342	76184088	253	78695											
CASR	846	broad.mit.edu	37	chr3	122002778	122002778	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctcctcttctccctgctCtgctgcttctccagctccct	4	21	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122002778	T	T	122002778	2	4	71	1	0	0	0	0	0	0	0	1	2708	900	32	4		4	CASR	3	122002778	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	164436	122002778	76019652	254	78696											
SEMA5B	54437	broad.mit.edu	37	chr3	122711922	122711922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgctgctactgctcccaGggagaaaacaacatttccct	8	13	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122711922	T	T	122711922	1	4	71	0	1	0	0	0	0	0	0	0	14151	1015	35	2		2	SEMA5B	3	122711922	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	709144	122711922	75310508	255	78697											
ROPN1	54763	broad.mit.edu	37	chr3	123699418	123699418	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatcctggacaggaggtcaCccagcctctgtttgacactc	9	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123699418	T	T	123699418	1	4	71	1	0	0	0	0	0	0	0	0	13634	522	18	4		4	ROPN1	3	123699418	Translation_Start_Site	SNP	C	TCGA-17-Z042-01A-01W-0746-08	987496	123699418	74323012	256	78698											
KALRN	8997	broad.mit.edu	37	chr3	123870984	123870984	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatagatctcatgaatcagAtccttcctgcagatgatgca	7	9	2	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123870984	G	G	123870984	1	3	71	0	1	0	0	0	0	0	0	0	8045	348	12	5		5	KALRN	3	123870984	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	171566	123870984	74151446	257	78699											
RUVBL1	8607	broad.mit.edu	37	chr3	127820308	127820308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagcccctccccacacacCccacaccctctgaagaaagc	4	22	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127820308	A	A	127820308	1	1	71	0	1	0	0	0	0	0	0	0	13863	638	22	2		2	RUVBL1	3	127820308	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3949324	127820308	70202122	258	78700											
EPHB1	2047	broad.mit.edu	37	chr3	134851442	134851442	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccatttggggttgaggaagGagtgggaggcgagcgcactg	20	6	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134851442	T	T	134851442	1	4	71	0	1	0	0	0	0	0	0	0	5216	1189	41	3		3	EPHB1	3	134851442	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	7031134	134851442	63170988	259	78701											
A4GNT	51146	broad.mit.edu	37	chr3	137850093	137850093	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggagagctggagctccttCcgcatgtcctcttctctgtg	12	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137850093	T	T	137850093	2	4	71	1	0	0	0	0	0	0	0	1	7	842	30	4		4	A4GNT	3	137850093	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2998651	137850093	60172337	260	78702											
CLSTN2	64084	broad.mit.edu	37	chr3	140123276	140123276	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacactcagacaactgccaCaattggctgatggtttctcc	9	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140123276	A	A	140123276	1	1	71	0	1	0	0	0	0	0	0	0	3594	493	17	3		3	CLSTN2	3	140123276	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2273183	140123276	57899154	261	78703											
CLSTN2	64084	broad.mit.edu	37	chr3	140178244	140178245	+	Intron	DNP	GG	TA	TA													tcctaagtcacatagctcatGgttaggcacagacgtctctg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	140178245	TA	TA	140178244	1	4	71	0	1	0	0	0	0	0	0	0	3594	1363	47	2		2	CLSTN2	3	140178244	Intron	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	54968	140178244	57844186	262	78704											
SLC25A36	55186	broad.mit.edu	37	chr3	140678316	140678316	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcagggtgatcttggAaaaagaagggcctcgttcct	11	9	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140678316	G	G	140678316	3	3	71	1	0	0	0	0	1	0	0	0	14614	246	9	5	228	5	SLC25A36	3	140678316	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	500072	140678316	57344114	263	78705											
ACPL2	92370	broad.mit.edu	37	chr3	141011154	141011154	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcagctgctgagggatatcTatctaaagaaacacaaactc	8	9	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141011154	A	A	141011154	3	1	71	1	0	0	0	0	1	0	0	0	166	1522	53	5	568	5	ACPL2	3	141011154	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	332838	141011154	57011276	264	78706											
XRN1	54464	broad.mit.edu	37	chr3	142066056	142066056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcacacacaagtacacCtttctaatttaaaacttaca	3	11	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142066056	A	A	142066056	1	1	71	0	1	0	0	0	0	0	0	0	17586	696	24	2		2	XRN1	3	142066056	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1054902	142066056	55956374	265	78707											
XRN1	54464	broad.mit.edu	37	chr3	142090172	142090172	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actaaatagttctggagctcTggtcaaacaaacaaaaatat	6	7	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142090172	A	A	142090172	5	1	71	1	0	0	0	0	0	0	1	0	17586	1594	55	5	2211	5	XRN1	3	142090172	Splice_Site	SNP	T	TCGA-17-Z042-01A-01W-0746-08	24116	142090172	55932258	266	78708											
SLC9A9	285195	broad.mit.edu	37	chr3	143236997	143236997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggaagcgcatttcctcGgtgtgcagaacgctcggatc	12	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143236997	T	T	143236997	1	4	71	0	1	0	0	0	0	0	0	0	14835	1131	39	1		1	SLC9A9	3	143236997	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1146825	143236997	54785433	267	78709											
PPM1L	151742	broad.mit.edu	37	chr3	160474254	160474254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccatcgtgaagtccagccGggacgccgtgaagatggtga	15	10	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160474254	T	T	160474254	3	4	71	1	0	0	0	0	1	0	0	0	12445	1116	39	1	160	1	PPM1L	3	160474254	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	17237257	160474254	37548176	268	78710											
SI	6476	broad.mit.edu	37	chr3	164786840	164786840	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttagaatatatcatattgAatcattataacagaggactt	6	4	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164786840	T	T	164786840	1	4	71	0	1	0	0	0	0	0	0	0	14410	261	9	5		5	SI	3	164786840	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	4312586	164786840	33235590	269	78711											
CCDC39	339829	broad.mit.edu	37	chr3	180365949	180365949	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatattcataaaagtaacatCtacctggctgtacataattt	5	7	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180365949	G	G	180365949	1	3	71	0	1	0	0	0	0	0	0	0	2838	928	32	4		4	CCDC39	3	180365949	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	15579109	180365949	17656481	270	78712											
CCDC39	339829	broad.mit.edu	37	chr3	180366106	180366106	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaactcctgagctttcttAaacagcacaccttttatgag	6	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180366106	T	T	180366106	3	4	71	1	0	0	0	0	1	0	0	0	2838	359	13	5	1660	5	CCDC39	3	180366106	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	157	180366106	17656324	271	78713											
THPO	7066	broad.mit.edu	37	chr3	184094268	184094268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggtgaacagatgctgGggagggcttgagatgctgac	19	6	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184094268	T	T	184094268	1	4	71	0	1	0	0	0	0	0	0	0	15995	1247	43	2		2	THPO	3	184094268	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3728162	184094268	13928162	272	78714											
EPHB3	2049	broad.mit.edu	37	chr3	184295235	184295235	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acggagtcatcctggactacGagatgaagtactttgagaag	12	7	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184295235	T	T	184295235	4	4	71	1	0	0	0	0	0	1	0	0	5218	1059	37	3	1481	3	EPHB3	3	184295235	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	200967	184295235	13727195	273	78715											
EPHB3	2049	broad.mit.edu	37	chr3	184296303	184296303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctcccagccccctgcagGgctctcagacacccttctcc	7	21	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184296303	T	T	184296303	1	4	71	0	1	0	0	0	0	0	0	0	5218	1247	43	2		2	EPHB3	3	184296303	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1068	184296303	13726127	274	78716											
DGKG	1608	broad.mit.edu	37	chr3	186015676	186015676	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttattcctcttgctgagagGttcatcagggcttcccgtaa	9	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186015676	C	C	186015676	1	2	71	0	1	0	0	0	0	0	0	0	4509	1276	44	4		4	DGKG	3	186015676	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1719373	186015676	12006754	275	78717											
DGKG	1608	broad.mit.edu	37	chr3	186028967	186028967	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcttgaggaacccaggacAcagtataatttaaaagcttc	7	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186028967	T	T	186028967	1	4	71	0	1	0	0	0	0	0	0	0	4509	174	6	5		5	DGKG	3	186028967	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	13291	186028967	11993463	276	78718											
ADD1	118	broad.mit.edu	37	chr4	2883767	2883767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcagctccgcaaggagGgatggctgccttaaacatga	12	12	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2883767	T	T	2883767	3	4	71	1	0	0	0	0	1	0	0	0	304	1232	43	2	344	2	ADD1	4	2883767	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08		2883767	188270509	277	78719											
ADD1	118	broad.mit.edu	37	chr4	2895664	2895664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgttctgaacaaaccCgtgaatttgtagcctgaaag	9	9	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2895664	T	T	2895664	1	4	71	0	1	0	0	0	0	0	0	0	304	667	23	4		4	ADD1	4	2895664	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	11897	2895664	188258612	278	78720											
HTT	3064	broad.mit.edu	37	chr4	3215520	3215520	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggggaataggtgggtcagGactgaatgtaatggagccat	16	4	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3215520	T	T	3215520	1	4	71	0	1	0	0	0	0	0	0	0	7527	1189	41	3		3	HTT	4	3215520	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	319856	3215520	187938756	279	78721											
STX18	53407	broad.mit.edu	37	chr4	4508991	4508991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgtactataaagagtcCggcatctcccaggctcttct	8	12	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4508991	A	A	4508991	1	1	71	0	1	0	0	0	0	0	0	0	15459	667	23	1		1	STX18	4	4508991	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1293471	4508991	186645285	280	78722											
C4orf50	389197	broad.mit.edu	37	chr4	5975502	5975502	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcccatgtctgtgcagctCctgcagcaggtgggtgatca	13	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5975502	A	A	5975502	4	1	71	1	0	0	0	0	0	1	0	0	2299	864	30	3	554	3	C4orf50	4	5975502	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1466511	5975502	185178774	281	78723											
BOD1L	259282	broad.mit.edu	37	chr4	13603790	13603790	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtgcattcactggcttcTgcaccaacatgaagaggatt	9	10	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13603790	C	C	13603790	2	2	71	1	0	0	0	0	0	0	0	1	1489	1567	55	5		5	BOD1L	4	13603790	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	7628288	13603790	177550486	282	78724											
BOD1L	259282	broad.mit.edu	37	chr4	13616186	13616186	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttggggctgtttccagtcCttcacctccagagtcagctg	10	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13616186	G	G	13616186	3	3	71	1	0	0	0	0	1	0	0	0	1489	690	24	4	8439	4	BOD1L	4	13616186	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	12396	13616186	177538090	283	78725											
C1QTNF7	114905	broad.mit.edu	37	chr4	15444425	15444425	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaagatgatgaattgtgatCaggaccaagatccctgtggt	12	6	1	6			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15444425	A	A	15444425	1	1	71	0	1	0	0	0	0	0	0	0	1988	841	29	3		3	C1QTNF7	4	15444425	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1828239	15444425	175709851	284	78726											
SLIT2	9353	broad.mit.edu	37	chr4	20530698	20530698	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcaacaaaatcccggagcAcattccccagtacactgcag	7	15	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20530698	T	T	20530698	3	4	71	1	0	0	0	0	1	0	0	0	14854	159	6	5	1651	5	SLIT2	4	20530698	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	5086273	20530698	170623578	285	78727											
SLIT2	9353	broad.mit.edu	37	chr4	20619254	20619254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcagcagtggatacacGggggacagctgtgatcgagg	17	7	0	1	rs147958857		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20619254	T	T	20619254	2	4	71	1	0	0	0	0	0	0	0	1	14854	1103	39	1		1	SLIT2	4	20619254	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	88556	20619254	170535022	286	78728											
SEPSECS	51091	broad.mit.edu	37	chr4	25128906	25128906	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagatatgggattgtgaGgtgtatgcaacagtctttca	11	5	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25128906	A	A	25128906	3	1	71	1	0	0	0	0	1	0	0	0	14171	1000	35	4	417	4	SEPSECS	4	25128906	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4509652	25128906	166025370	287	78729											
PCDH7	5099	broad.mit.edu	37	chr4	30880087	30880087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaagattgaggacagcCaatggacctttccgaaactg	11	8	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30880087	A	A	30880087	1	1	71	0	1	0	0	0	0	0	0	0	11610	609	21	2		2	PCDH7	4	30880087	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5751181	30880087	160274189	288	78730											
ARAP2	116984	broad.mit.edu	37	chr4	36230755	36230755	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctaacagtctccaactgCggtgggctagatgtctgaac	10	10	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36230755	T	T	36230755	2	4	71	1	0	0	0	0	0	0	0	1	841	755	27	4		4	ARAP2	4	36230755	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5350668	36230755	154923521	289	78731											
TBC1D1	23216	broad.mit.edu	37	chr4	38091856	38091856	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgatagtctaatgtatacAtctatctatatctgtttact	4	8	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38091856	C	C	38091856	1	2	71	0	1	0	0	0	0	0	0	0	15716	232	8	5		5	TBC1D1	4	38091856	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1861101	38091856	153062420	290	78732											
KLF3	51274	broad.mit.edu	37	chr4	38698682	38698682	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacagaaaaaaaaaatagctCttttctttttccttttgcag	4	7	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38698682	G	G	38698682	1	3	71	0	1	0	0	0	0	0	0	0	8418	928	32	4		4	KLF3	4	38698682	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	606826	38698682	152455594	291	78733											
FAM114A1	92689	broad.mit.edu	37	chr4	38879976	38879976	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgactgaggatacacttgctGaatgtattgattccgtcagc	10	8	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38879976	T	T	38879976	4	4	71	1	0	0	0	0	0	1	0	0	5449	1291	45	3	279	3	FAM114A1	4	38879976	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	181294	38879976	152274300	292	78734											
WDR19	57728	broad.mit.edu	37	chr4	39279780	39279780	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttgaaagatgactggacGgtgtgtccacattgtgactt	12	6	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39279780	T	T	39279780	2	4	71	1	0	0	0	0	0	0	0	1	17406	1103	39	1		1	WDR19	4	39279780	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	399804	39279780	151874496	293	78735											
PDS5A	23244	broad.mit.edu	37	chr4	39839659	39839659	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagcattgccctgagattcaGacttgggtcgacgtcctctc	10	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39839659	C	C	39839659	3	2	71	1	0	0	0	0	1	0	0	0	11785	942	33	4	194	4	PDS5A	4	39839659	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	559879	39839659	151314617	294	78736											
RBM47	54502	broad.mit.edu	37	chr4	40440354	40440354	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatcttgtcggccgcgCtggcgtagacgatcacgtcc	11	14	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40440354	G	G	40440354	3	3	71	1	0	0	0	0	1	0	0	0	13249	797	28	4	1240	4	RBM47	4	40440354	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	600695	40440354	150713922	295	78737											
BEND4	389206	broad.mit.edu	37	chr4	42122223	42122223	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaggtatcgaaggagccgtCtcccatctttctttgaagaa	10	9	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42122223	T	T	42122223	3	4	71	1	0	0	0	0	1	0	0	0	1405	913	32	4	377	4	BEND4	4	42122223	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1681869	42122223	149032053	296	78738											
GRXCR1	389207	broad.mit.edu	37	chr4	42895294	42895294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgaccatgcttaaaaGggagatgaagccagaaagtg	15	5	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42895294	T	T	42895294	3	4	71	1	0	0	0	0	1	0	0	0	6878	1000	35	2	13	2	GRXCR1	4	42895294	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	773071	42895294	148258982	297	78739											
GABRA2	2555	broad.mit.edu	37	chr4	46252500	46252500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttcttgttgggttctGgcgtggttgcactcttggag	15	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46252500	A	A	46252500	3	1	71	1	0	0	0	0	1	0	0	0	6221	1348	47	4	178	4	GABRA2	4	46252500	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3357206	46252500	144901776	298	78740											
KDR	3791	broad.mit.edu	37	chr4	55972029	55972029	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagatcaccctctctcCtctcccgactttgttgaccg	8	15	3	2	rs55716939	byFrequency	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55972029	T	T	55972029	3	4	71	1	0	0	0	0	1	0	0	0	8209	690	24	4	2531	4	KDR	4	55972029	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	9719529	55972029	135182247	299	78741											
AASDH	132949	broad.mit.edu	37	chr4	57220230	57220230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaagttcaatgttaagaCgtttgccatgacgtttgatc	9	8	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57220230	A	A	57220230	3	1	71	1	0	0	0	0	1	0	0	0	22	536	19	3	1970	3	AASDH	4	57220230	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1248201	57220230	133934046	300	78742											
LPHN3	23284	broad.mit.edu	37	chr4	62598825	62598825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatagcaaatgccaattacCatgatacctccccttaccga	4	14	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62598825	A	A	62598825	3	1	71	1	0	0	0	0	1	0	0	0	9004	594	21	2	766	2	LPHN3	4	62598825	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5378595	62598825	128555451	301	78743											
UGT2B10	7365	broad.mit.edu	37	chr4	69693248	69693248	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgaatgcactgaagaCagtaattaatgatccttcgt	8	9	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69693248	G	G	69693248	3	3	71	1	0	0	0	0	1	0	0	0	17082	478	17	4	1307	4	UGT2B10	4	69693248	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7094423	69693248	121461028	302	78744											
ENAM	10117	broad.mit.edu	37	chr4	71510331	71510331	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgctttggctccaaattagCaaagcatcactcttccacca	5	13	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71510331	G	G	71510331	3	3	71	1	0	0	0	0	1	0	0	0	5154	710	25	4	3218	4	ENAM	4	71510331	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1817083	71510331	119643945	303	78745											
RASSF6	166824	broad.mit.edu	37	chr4	74451106	74451106	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaatagattataagctcAtatcattcagctgcctgtgt	8	7	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74451106	G	G	74451106	1	3	71	0	1	0	0	0	0	0	0	0	13198	232	8	5		5	RASSF6	4	74451106	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2940775	74451106	116703170	304	78746											
PPEF2	5470	broad.mit.edu	37	chr4	76805951	76805951	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaaagaatgaatgggaGgaaggaaataggaaatcagg	15	2	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76805951	A	A	76805951	1	1	71	0	1	0	0	0	0	0	0	0	12404	1015	35	4		4	PPEF2	4	76805951	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2354845	76805951	114348325	305	78747											
C4orf22	255119	broad.mit.edu	37	chr4	81586037	81586037	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacccaagggaatctctgttCtgtggattgcgaagaccttg	11	10	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81586037	G	G	81586037	1	3	71	0	1	0	0	0	0	0	0	0	2278	928	32	4		4	C4orf22	4	81586037	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4780086	81586037	109568239	306	78748											
HERC6	55008	broad.mit.edu	37	chr4	89318022	89318022	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatcacaccctggcatatGtgcacaccactggtcaggtg	10	12	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89318022	T	T	89318022	3	4	71	1	0	0	0	0	1	0	0	0	7129	1377	48	3	730	3	HERC6	4	89318022	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	7731985	89318022	101836254	307	78749											
MMRN1	22915	broad.mit.edu	37	chr4	90872775	90872775	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggagtattcaagctgtagTcggcatccgtgccaaaatgg	13	8	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90872775	A	A	90872775	3	1	71	1	0	0	0	0	1	0	0	0	9764	1664	58	5	3164	5	MMRN1	4	90872775	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1554753	90872775	100281501	308	78750											
ADH1B	125	broad.mit.edu	37	chr4	100237232	100237232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttccccctgcaggtgaaCctcctggtgccatcctgcag	11	16	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100237232	A	A	100237232	3	1	71	1	0	0	0	0	1	0	0	0	308	506	18	3	757	3	ADH1B	4	100237232	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	9364457	100237232	90917044	309	78751											
AGXT2L1	64850	broad.mit.edu	37	chr4	109663831	109663831	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatccagcctccacaggactGacttaacaagtccacacaca	5	15	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109663831	C	C	109663831	1	2	71	0	1	0	0	0	0	0	0	0	406	1305	45	4		4	AGXT2L1	4	109663831	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9426599	109663831	81490445	310	78752											
ALPK1	80216	broad.mit.edu	37	chr4	113345153	113345153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctaataagcaacaatggaGcaacgggtgagtactttcat	10	7	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113345153	T	T	113345153	3	4	71	1	0	0	0	0	1	0	0	0	544	971	34	3	543	3	ALPK1	4	113345153	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3681322	113345153	77809123	311	78753											
ALPK1	80216	broad.mit.edu	37	chr4	113351753	113351753	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgttactggaaaacaggaGcttcacagctttgtcaaagc	9	10	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113351753	A	A	113351753	2	1	71	1	0	0	0	0	0	0	0	1	544	962	34	4		4	ALPK1	4	113351753	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6600	113351753	77802523	312	78754											
ANK2	287	broad.mit.edu	37	chr4	113747715	113747715	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttgcccagccgggcccTgtcctttcacaaccagctgg	9	16	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113747715	A	A	113747715	1	1	71	0	1	0	0	0	0	0	0	0	621	1595	55	5		5	ANK2	4	113747715	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	395962	113747715	77406561	313	78755											
ANK2	287	broad.mit.edu	37	chr4	114238882	114238882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccttcgatccttcagttccGacaggtctcacactctgagc	8	15	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114238882	T	T	114238882	3	4	71	1	0	0	0	0	1	0	0	0	621	1058	37	3	2836	3	ANK2	4	114238882	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	491167	114238882	76915394	314	78756											
CAMK2D	817	broad.mit.edu	37	chr4	114458430	114458430	+	Intron	DEL	G	-	-													ttttattttcactaggaagtGggattaggagccagaattca							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114458430	-	-	114458430	6	5	71	0	1	1	0	1	0	0	0	0	2627	1363	47	0		0	CAMK2D	4	114458430	Intron	DEL	G	TCGA-17-Z042-01A-01W-0746-08	219548	114458430	76695846	315	78757											
KIAA1109	84162	broad.mit.edu	37	chr4	123230412	123230412	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttatttcttctttaatatAttttgcagtctaatcatact	2	7	5	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123230412	G	G	123230412	1	3	71	0	1	0	0	0	0	0	0	0	8278	464	16	5		5	KIAA1109	4	123230412	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	8771982	123230412	67923864	316	78758											
KIAA1109	84162	broad.mit.edu	37	chr4	123264574	123264575	+	Missense_Mutation	DNP	GA	TT	TT													gctcactgtaggttcatcggGattaggcagccctcttggcc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	123264575	TT	TT	123264574	3	4	71	1	0	0	0	0	1	0	0	0	8278	1174	41	3	12644	3	KIAA1109	4	123264574	Missense_Mutation	DNP	GA	TCGA-17-Z042-01A-01W-0746-08	34162	123264574	67889702	317	78759											
ANKRD50	57182	broad.mit.edu	37	chr4	125592488	125592488	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctccccatgctgctgctctCaaagctgttcggctatcagc	8	16	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125592488	A	A	125592488	3	1	71	1	0	0	0	0	1	0	0	0	677	825	29	3	2349	3	ANKRD50	4	125592488	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2327914	125592488	65561788	318	78760											
MFSD8	256471	broad.mit.edu	37	chr4	128865259	128865259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaataaaaacaattctaaCgtataagttttataacacta	2	5	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128865259	A	A	128865259	1	1	71	0	1	0	0	0	0	0	0	0	9631	551	19	3		3	MFSD8	4	128865259	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3272771	128865259	62289017	319	78761											
OTUD4	54726	broad.mit.edu	37	chr4	146071687	146071687	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgatctgtgaaggtgtccGgctaagatttttgtgctcac	11	7	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146071687	A	A	146071687	3	1	71	1	0	0	0	0	1	0	0	0	11408	1115	39	4	2143	4	OTUD4	4	146071687	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	17206428	146071687	45082589	320	78762											
POU4F2	5458	broad.mit.edu	37	chr4	147560954	147560954	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgagccctgggccggggCttccggagagagggcgtaca	18	11	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147560954	A	A	147560954	1	1	71	0	1	0	0	0	0	0	0	0	12375	812	28	3		3	POU4F2	4	147560954	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1489267	147560954	43593322	321	78763											
TTC29	83894	broad.mit.edu	37	chr4	147755028	147755028	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcatccaggtctgtggagaTtttacagtaagtgtcaagga	11	6	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147755028	A	A	147755028	3	1	71	1	0	0	0	0	1	0	0	0	16822	1493	52	5	540	5	TTC29	4	147755028	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	194074	147755028	43399248	322	78764											
FGG	2266	broad.mit.edu	37	chr4	155528068	155528068	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcatccccaccagcgaaGtaggcatatgttaggcggta	11	12	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155528068	A	A	155528068	2	1	71	1	0	0	0	0	0	0	0	1	5927	1024	36	4		4	FGG	4	155528068	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	7773040	155528068	35626208	323	78765											
MARCH1	55016	broad.mit.edu	37	chr4	164854388	164854388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaagaatgtgatgcagCagaaggggctgaaactaaat	14	4	0	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164854388	A	A	164854388	1	1	71	0	1	0	0	0	0	0	0	0	9390	725	25	3		3	MARCH1	4	164854388	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	9326320	164854388	26299888	324	78766											
MARCH1	55016	broad.mit.edu	37	chr4	165110521	165110521	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaattttaagagctaaaCatggatctgttctggtctac	8	8	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165110521	T	T	165110521	1	4	71	0	1	0	0	0	0	0	0	0	9390	493	17	4		4	MARCH1	4	165110521	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	256133	165110521	26043755	325	78767											
TLL1	7092	broad.mit.edu	37	chr4	167012460	167012460	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtttctgatgcatctgttCaaagaaaaggctttcaagct	8	7	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167012460	A	A	167012460	3	1	71	1	0	0	0	0	1	0	0	0	16068	827	29	3	2697	3	TLL1	4	167012460	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1901939	167012460	24141816	326	78768											
ODZ3	55714	broad.mit.edu	37	chr4	183659426	183659426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaattaaaaaataaactGctcataaataagtggaaata	4	4	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183659426	T	T	183659426	1	4	71	0	1	0	0	0	0	0	0	0	10931	1334	46	3		3	ODZ3	4	183659426	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	16646966	183659426	7494850	327	78769											
FAT1	2195	broad.mit.edu	37	chr4	187542290	187542290	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaatagcaaaatatgtgTgtacagatggttcaacaatg	8	5	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187542290	C	C	187542290	3	2	71	1	0	0	0	0	1	0	0	0	5746	1696	59	5	8388	5	FAT1	4	187542290	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	3882864	187542290	3611986	328	78770											
TRIML2	205860	broad.mit.edu	37	chr4	189026187	189026187	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtatatattttcttagcCtttaggttgaaggttcaacg	9	5	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189026187	T	T	189026187	1	4	71	0	1	0	0	0	0	0	0	0	16676	696	24	4		4	TRIML2	4	189026187	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1483897	189026187	2128089	329	78771											
CTNND2	1501	broad.mit.edu	37	chr5	11199628	11199628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccagtgctgggatgccaCcacagtttttcagggcaatt	10	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11199628	A	A	11199628	3	1	71	1	0	0	0	0	1	0	0	0	4054	507	18	3	1818	3	CTNND2	5	11199628	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08		11199628	169715632	330	78772											
FBXL7	23194	broad.mit.edu	37	chr5	15927940	15927940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaccagtgcttttgctgCctccctggggctctgctgag	12	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15927940	A	A	15927940	1	1	71	0	1	0	0	0	0	0	0	0	5781	754	26	3		3	FBXL7	5	15927940	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4728312	15927940	164987320	331	78773											
MARCH11	441061	broad.mit.edu	37	chr5	16090862	16090862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagcccaattgtgaccCgcagctaattcattaacagg	8	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16090862	A	A	16090862	1	1	71	0	1	0	0	0	0	0	0	0	9392	667	23	1		1	MARCH11	5	16090862	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	162922	16090862	164824398	332	78774											
CDH18	1016	broad.mit.edu	37	chr5	19473300	19473300	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtatatccacttactcagGaagcaaattccacaaggttg	7	9	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473300	T	T	19473300	1	4	71	0	1	0	0	0	0	0	0	0	3133	1189	41	3		3	CDH18	5	19473300	3'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3382438	19473300	161441960	333	78775											
CDH18	1016	broad.mit.edu	37	chr5	19916294	19916294	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcagcttaaaactatcaaGagccacacgtcctttatgcc	5	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19916294	C	C	19916294	1	2	71	0	1	0	0	0	0	0	0	0	3133	957	33	4		4	CDH18	5	19916294	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	442994	19916294	160998966	334	78776											
CDH12	1010	broad.mit.edu	37	chr5	21802410	21802410	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctcatctacgtccagcacGctgatcttcaccgtagctgt	9	14	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21802410	C	C	21802410	3	2	71	1	0	0	0	0	1	0	0	0	3128	1078	38	4	1286	4	CDH12	5	21802410	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1886116	21802410	159112850	335	78777											
PRDM9	56979	broad.mit.edu	37	chr5	23522335	23522335	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagatgccaatttgatggtAgatttcacattttcttatga	8	5	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23522335	T	T	23522335	1	4	71	0	1	0	0	0	0	0	0	0	12569	435	15	5		5	PRDM9	5	23522335	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1719925	23522335	157392925	336	78778											
PRDM9	56979	broad.mit.edu	37	chr5	23522908	23522908	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtatggaatgaggcatctGatctgccgctgggtctgcac	14	9	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23522908	T	T	23522908	3	4	71	1	0	0	0	0	1	0	0	0	12569	1290	45	3	822	3	PRDM9	5	23522908	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	573	23522908	157392352	337	78779											
CDH10	1008	broad.mit.edu	37	chr5	24491817	24491817	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacacactcgaatggtcaGtgtgcctgtgctgctctgaa	11	11	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24491817	A	A	24491817	2	1	71	1	0	0	0	0	0	0	0	1	3126	1020	36	4		4	CDH10	5	24491817	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	968909	24491817	156423443	338	78780											
CDH10	1008	broad.mit.edu	37	chr5	24492867	24492867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatattgcaatggttacaCtcgggaaatttcctgttaat	7	6	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24492867	A	A	24492867	1	1	71	0	1	0	0	0	0	0	0	0	3126	580	20	3		3	CDH10	5	24492867	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1050	24492867	156422393	339	78781											
CDH10	1008	broad.mit.edu	37	chr5	24535332	24535332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttggcctggatgaccaCttggtattgctctctgtttt	10	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24535332	A	A	24535332	3	1	71	1	0	0	0	0	1	0	0	0	3126	565	20	3	1695	3	CDH10	5	24535332	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	42465	24535332	156379928	340	78782											
CDH9	1007	broad.mit.edu	37	chr5	26906108	26906108	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgttgacatctgtcagCgtgatgttcactgtggtggt	13	6	3	2	rs141361996		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906108	A	A	26906108	2	1	71	1	0	0	0	0	0	0	0	1	3147	755	27	3		3	CDH9	5	26906108	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2370776	26906108	154009152	341	78783											
CDH6	1004	broad.mit.edu	37	chr5	31287326	31287326	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggagggagacaaggacCaaagacacaggcctacagga	14	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31287326	G	G	31287326	1	3	71	0	1	0	0	0	0	0	0	0	3144	609	21	4		4	CDH6	5	31287326	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4381218	31287326	149627934	342	78784											
CDH6	1004	broad.mit.edu	37	chr5	31299469	31299469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgacatctgcatagcatTttgcatattgtgggtgacag	10	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31299469	A	A	31299469	1	1	71	0	1	0	0	0	0	0	0	0	3144	1856	64	5		5	CDH6	5	31299469	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	12143	31299469	149615791	343	78785											
PDZD2	23037	broad.mit.edu	37	chr5	31677996	31677996	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggtaggacagcagcagagGaggaaggggggaggaccaag	20	5	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31677996	A	A	31677996	1	1	71	0	1	0	0	0	0	0	0	0	11795	1189	41	4		4	PDZD2	5	31677996	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	378527	31677996	149237264	344	78786											
ZFR	51663	broad.mit.edu	37	chr5	32403524	32403524	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaaacaaaagcacacttAtttgtcaggaaactcaaata	4	7	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32403524	G	G	32403524	1	3	71	0	1	0	0	0	0	0	0	0	17785	464	16	5		5	ZFR	5	32403524	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	725528	32403524	148511736	345	78787											
ADAMTS12	81792	broad.mit.edu	37	chr5	33630991	33630991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaactggccatctatgGgtcggcagtagagctcacaa	11	10	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33630991	T	T	33630991	3	4	71	1	0	0	0	0	1	0	0	0	257	1232	43	2	2916	2	ADAMTS12	5	33630991	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1227467	33630991	147284269	346	78788											
ADAMTS12	81792	broad.mit.edu	37	chr5	33661875	33661875	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctctactgatagggaagtCaggagttgactagatcaaag	11	7	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33661875	T	T	33661875	1	4	71	0	1	0	0	0	0	0	0	0	257	841	29	4		4	ADAMTS12	5	33661875	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	30884	33661875	147253385	347	78789											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881244	33881244	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtccatggcaggcactgaGggctgccgtcccaactctgg	13	14	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33881244	A	A	33881244	3	1	71	1	0	0	0	0	1	0	0	0	257	1000	35	4	4407	4	ADAMTS12	5	33881244	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	219369	33881244	147034016	348	78790											
AMACR	23600	broad.mit.edu	37	chr5	33989444	33989444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcatgatgaacaacctcCtcaaaagtcagaaccggagt	8	10	3	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33989444	A	A	33989444	3	1	71	1	0	0	0	0	1	0	0	0	562	680	24	2	307	2	AMACR	5	33989444	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	108200	33989444	146925816	349	78791											
CAPSL	133690	broad.mit.edu	37	chr5	35921095	35921095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggtcctacctgccaagtCctttgatcccagcagagccc	9	16	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35921095	A	A	35921095	3	1	71	1	0	0	0	0	1	0	0	0	2665	855	30	3	514	3	CAPSL	5	35921095	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1931651	35921095	144994165	350	78792											
SKP2	6502	broad.mit.edu	37	chr5	36184065	36184065	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacatgtcagagtaatctgTatttttgtatgtgatttcta	7	5	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36184065	C	C	36184065	2	2	71	1	0	0	0	0	0	0	0	1	14475	1644	57	5		5	SKP2	5	36184065	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	262970	36184065	144731195	351	78793											
WDR70	55100	broad.mit.edu	37	chr5	37682620	37682622	+	Intron	DEL	GTT	-	-													tcttttagttgtaatgttagGttgttaagttgagatctttc					rs34767080		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37682622	-	-	37682620	6	5	71	0	1	1	0	1	0	0	0	0	17448	1276	44	0		0	WDR70	5	37682620	Intron	DEL	GTT	TCGA-17-Z042-01A-01W-0746-08	1498555	37682620	143232640	352	78794											
EGFLAM	133584	broad.mit.edu	37	chr5	38418157	38418157	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtattcatgagtggtcatCtttcttaaagggccaataca	9	7	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38418157	A	A	38418157	1	1	71	0	1	0	0	0	0	0	0	0	5006	928	32	3		3	EGFLAM	5	38418157	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	735537	38418157	142497103	353	78795											
EGFLAM	133584	broad.mit.edu	37	chr5	38451444	38451444	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatcaagatcaaatgtgttCatgaggtttaaaacaactgc	9	6	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38451444	A	A	38451444	3	1	71	1	0	0	0	0	1	0	0	0	5006	825	29	3	2659	3	EGFLAM	5	38451444	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	33287	38451444	142463816	354	78796											
FYB	2533	broad.mit.edu	37	chr5	39134528	39134528	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaataaaatatcaattgCacatttgctctttaaacttt	4	6	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39134528	T	T	39134528	1	4	71	0	1	0	0	0	0	0	0	0	6184	725	25	4		4	FYB	5	39134528	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	683084	39134528	141780732	355	78797											
C9	735	broad.mit.edu	37	chr5	39316033	39316033	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtaaattttagagatatAgctgcattaaaatttgatgt	9	2	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39316033	C	C	39316033	2	2	71	1	0	0	0	0	0	0	0	1	2469	407	15	5		5	C9	5	39316033	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	181505	39316033	141599227	356	78798											
GHR	2690	broad.mit.edu	37	chr5	42468079	42468079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccctccttattctctgCctctttaacatgttttcttt	2	13	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42468079	A	A	42468079	1	1	71	0	1	0	0	0	0	0	0	0	6435	754	26	3		3	GHR	5	42468079	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3152046	42468079	138447181	357	78799											
HCN1	348980	broad.mit.edu	37	chr5	45353126	45353126	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttctttagagtaacgtgGactagaagattctccatgaa	8	6	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45353126	T	T	45353126	1	4	71	0	1	0	0	0	0	0	0	0	7062	1189	41	3		3	HCN1	5	45353126	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2885047	45353126	135562134	358	78800											
CDC20B	166979	broad.mit.edu	37	chr5	54420757	54420757	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagcctgccatccggtgaCcacttcagagcacacacagc	9	16	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54420757	G	G	54420757	3	3	71	1	0	0	0	0	1	0	0	0	3090	508	18	4	486	4	CDC20B	5	54420757	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	9067631	54420757	126494503	359	78801											
PDE4D	5144	broad.mit.edu	37	chr5	59093401	59093401	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttaactgtagagaatatgTcttctaaggcaccagagaca	8	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59093401	A	A	59093401	1	1	71	0	1	0	0	0	0	0	0	0	11736	1682	58	5		5	PDE4D	5	59093401	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4672644	59093401	121821859	360	78802											
SFRS12IP1	285672	broad.mit.edu	37	chr5	64020382	64020382	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaagtgtcctcttcagtGgaactggatgagtaagacct	11	7	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64020382	A	A	64020382	2	1	71	1	0	0	0	0	0	0	0	1	14281	1335	47	4		4	SFRS12IP1	5	64020382	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4926981	64020382	116894878	361	78803											
CENPK	64105	broad.mit.edu	37	chr5	64824356	64824356	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaggtactcaagagtttctCcttatattcttttatattaa	4	7	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64824356	A	A	64824356	4	1	71	1	0	0	0	0	0	1	0	0	3265	864	30	3	301	3	CENPK	5	64824356	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	803974	64824356	116090904	362	78804											
MAST4	375449	broad.mit.edu	37	chr5	66429410	66429410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctaaggtgggactaatgaGcatgactaccaacctttacg	9	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66429410	T	T	66429410	3	4	71	1	0	0	0	0	1	0	0	0	9419	971	34	3	2358	3	MAST4	5	66429410	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1605054	66429410	114485850	363	78805											
MAP1B	4131	broad.mit.edu	37	chr5	71492142	71492142	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctgatgcatacatcaGggagaagagggagtctgtgg	18	5	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71492142	A	A	71492142	3	1	71	1	0	0	0	0	1	0	0	0	9320	1000	35	4	2978	4	MAP1B	5	71492142	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5062732	71492142	109423118	364	78806											
SV2C	22987	broad.mit.edu	37	chr5	75609966	75609966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattgtcttccttatttaCtgccataactctaggtgaat	6	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75609966	A	A	75609966	1	1	71	0	1	0	0	0	0	0	0	0	15537	580	20	3		3	SV2C	5	75609966	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4117824	75609966	105305294	365	78807											
IQGAP2	10788	broad.mit.edu	37	chr5	75893525	75893525	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggaatagggatcggggatCtctaatttgtaccagtcctg	14	7	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75893525	T	T	75893525	1	4	71	0	1	0	0	0	0	0	0	0	7885	928	32	4		4	IQGAP2	5	75893525	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	283559	75893525	105021735	366	78808											
F2RL2	2151	broad.mit.edu	37	chr5	75914185	75914185	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaagaaaagcatccacAgggtcacagcattggccggg	12	11	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75914185	C	C	75914185	3	2	71	1	0	0	0	0	1	0	0	0	5388	188	7	5	781	5	F2RL2	5	75914185	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	20660	75914185	105001075	367	78809											
AP3B1	8546	broad.mit.edu	37	chr5	77412195	77412195	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaatgcaactgttagaagtCctggcattaaggctgattca	11	7	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77412195	A	A	77412195	1	1	71	0	1	0	0	0	0	0	0	0	746	870	30	3		3	AP3B1	5	77412195	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1498010	77412195	103503065	368	78810											
THBS4	7060	broad.mit.edu	37	chr5	79366218	79366218	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaactgccatgctctgcCaggaactgtaaaaaggtaag	11	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79366218	A	A	79366218	2	1	71	1	0	0	0	0	0	0	0	1	15979	581	21	2		2	THBS4	5	79366218	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1954023	79366218	101549042	369	78811											
EDIL3	10085	broad.mit.edu	37	chr5	83362384	83362384	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaatcctcttggctccttgGgtaatcacaccagtaactct	6	14	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83362384	C	C	83362384	2	2	71	1	0	0	0	0	0	0	0	1	4955	1219	43	4		4	EDIL3	5	83362384	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3996166	83362384	97552876	370	78812											
EDIL3	10085	broad.mit.edu	37	chr5	83525686	83525686	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttacctgctgaagttggTtcttcttcatctgatgctat	7	9	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83525686	A	A	83525686	3	1	71	1	0	0	0	0	1	0	0	0	4955	1722	60	5	1265	5	EDIL3	5	83525686	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	163302	83525686	97389574	371	78813											
FER	2241	broad.mit.edu	37	chr5	108380495	108380495	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatttttacaagaagccAagtgagttatttaaagtaat	6	3	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108380495	T	T	108380495	4	4	71	1	0	0	0	0	0	1	0	0	5870	144	5	5	1878	5	FER	5	108380495	Nonsense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	24854809	108380495	72534765	372	78814											
TRIM36	55521	broad.mit.edu	37	chr5	114513322	114513322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggctagtgctggggctgCggggcggggcaggatttgag	22	6	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114513322	A	A	114513322	1	1	71	0	1	0	0	0	0	0	0	0	16634	783	27	3		3	TRIM36	5	114513322	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6132827	114513322	66401938	373	78815											
PRR16	51334	broad.mit.edu	37	chr5	120022087	120022087	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagacagatgtccccaggcaGggcctcgagaacgagttcgg	14	11	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120022087	C	C	120022087	3	2	71	1	0	0	0	0	1	0	0	0	12695	1000	35	4	535	4	PRR16	5	120022087	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5508765	120022087	60893173	374	78816											
FBN2	2201	broad.mit.edu	37	chr5	127595074	127595074	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttcctctttaaaattaGtccttgacttttcaaatgct	3	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127595074	T	T	127595074	1	4	71	0	1	0	0	0	0	0	0	0	5760	1044	36	3		3	FBN2	5	127595074	3'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	7572987	127595074	53320186	375	78817											
KIF20A	10112	broad.mit.edu	37	chr5	137521276	137521276	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcagtggcccatcagcaaTcagggtctgaattggcccta	11	11	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137521276	G	G	137521276	3	3	71	1	0	0	0	0	1	0	0	0	8356	1435	50	5	2060	5	KIF20A	5	137521276	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	9926202	137521276	43393984	376	78818											
GFRA3	2676	broad.mit.edu	37	chr5	137589488	137589488	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggagaagaacccttccaGcatttcacactcctcctgca	8	14	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137589488	A	A	137589488	2	1	71	1	0	0	0	0	0	0	0	1	6413	962	34	4		4	GFRA3	5	137589488	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	68212	137589488	43325772	377	78819											
PCDHA7	56141	broad.mit.edu	37	chr5	140215843	140215843	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatcccgttccgcgtgggGctgtacactggtgagatcag	14	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140215843	T	T	140215843	2	4	71	1	0	0	0	0	0	0	0	1	11623	1190	42	3		3	PCDHA7	5	140215843	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2626355	140215843	40699417	378	78820											
PCDHB6	56130	broad.mit.edu	37	chr5	140530959	140530959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttcagatgcagactctgGacataaccaacaggttattt	8	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140530959	T	T	140530959	3	4	71	1	0	0	0	0	1	0	0	0	11640	1174	41	3	1123	3	PCDHB6	5	140530959	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	315116	140530959	40384301	379	78821											
PCDHB11	56125	broad.mit.edu	37	chr5	140581476	140581476	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtgctcctgttcgtggCggtgcggctgtgcaggagga	18	10	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140581476	T	T	140581476	3	4	71	1	0	0	0	0	1	0	0	0	11630	768	27	4	2131	4	PCDHB11	5	140581476	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	50517	140581476	40333784	380	78822											
PCDHGB5	56101	broad.mit.edu	37	chr5	140779113	140779113	+	Frame_Shift_Del	DEL	G	-	-													atcgcgcaagtctgcgcctcGgacctggacttggggttgaa							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140779113	-	-	140779113	7	5	71	1	0	1	0	1	0	0	0	0	11660	1103	39	0	1421	0	PCDHGB5	5	140779113	Frame_Shift_Del	DEL	G	TCGA-17-Z042-01A-01W-0746-08	197637	140779113	40136147	381	78823											
PCDHGA12	26025	broad.mit.edu	37	chr5	140810506	140810506	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagccccgggagctcgcGgagcgcggagtccgcatcat	16	14	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140810506	T	T	140810506	2	4	71	1	0	0	0	0	0	0	0	1	11647	1103	39	1		1	PCDHGA12	5	140810506	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	31393	140810506	40104754	382	78824											
SPINK5	11005	broad.mit.edu	37	chr5	147481425	147481425	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaccccatccagggcccaGatggaaaaatgcatggcaac	10	12	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147481425	A	A	147481425	3	1	71	1	0	0	0	0	1	0	0	0	15180	942	33	4	1442	4	SPINK5	5	147481425	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6670919	147481425	33433835	383	78825											
TNIP1	10318	broad.mit.edu	37	chr5	150416337	150416337	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctcccacctgatttcctCccggaagcctcacctgctgt	6	19	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150416337	T	T	150416337	1	4	71	0	1	0	0	0	0	0	0	0	16437	870	30	4		4	TNIP1	5	150416337	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2934912	150416337	30498923	384	78826											
GRIA1	2890	broad.mit.edu	37	chr5	153144084	153144084	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaatctggccgccttcctGaccgtggagaggatggtgtc	14	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153144084	T	T	153144084	2	4	71	1	0	0	0	0	0	0	0	1	6833	1277	45	3		3	GRIA1	5	153144084	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2727747	153144084	27771176	385	78827											
ADRA1B	147	broad.mit.edu	37	chr5	159344556	159344556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgggctccttctacatccCtctggcggtcattctagtca	8	14	6	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159344556	T	T	159344556	3	4	71	1	0	0	0	0	1	0	0	0	335	681	24	4	646	4	ADRA1B	5	159344556	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6200472	159344556	21570704	386	78828											
DOCK2	1794	broad.mit.edu	37	chr5	169150122	169150122	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgcatcctgccttctgctCttattacagacctgcttatt	5	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169150122	A	A	169150122	1	1	71	0	1	0	0	0	0	0	0	0	4727	928	32	3		3	DOCK2	5	169150122	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	9805566	169150122	11765138	387	78829											
KCNIP1	30820	broad.mit.edu	37	chr5	169896510	169896510	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgcctttggggtgtggccTcatgcctcccctctgggttg	13	13	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169896510	C	C	169896510	1	2	71	0	1	0	0	0	0	0	0	0	8109	1566	54	5		5	KCNIP1	5	169896510	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	746388	169896510	11018750	388	78830											
KCNIP1	30820	broad.mit.edu	37	chr5	170162877	170162877	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaccttaacaccctgatcTgcccttgttctgattttaca	4	14	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170162877	C	C	170162877	1	2	71	0	1	0	0	0	0	0	0	0	8109	1595	55	5		5	KCNIP1	5	170162877	3'UTR	SNP	T	TCGA-17-Z042-01A-01W-0746-08	266367	170162877	10752383	389	78831											
STK10	6793	broad.mit.edu	37	chr5	171520360	171520360	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaaccaaaatggagccAcagaacatcctgcaatggtc	8	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171520360	T	T	171520360	1	4	71	0	1	0	0	0	0	0	0	0	15404	174	6	5		5	STK10	5	171520360	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1357483	171520360	9394900	390	78832											
FAM193B	54540	broad.mit.edu	37	chr5	176966185	176966185	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacagggtttcccaggagggGaaaggctctccttcaaaata	11	9	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176966185	C	C	176966185	1	2	71	0	1	0	0	0	0	0	0	0	5572	1189	41	4		4	FAM193B	5	176966185	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5445825	176966185	3949075	391	78833											
ADAMTS2	9509	broad.mit.edu	37	chr5	178559693	178559693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcataagcccggacagcccCaggatgagtcaggccctcag	12	14	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178559693	A	A	178559693	1	1	71	0	1	0	0	0	0	0	0	0	265	609	21	2		2	ADAMTS2	5	178559693	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1593508	178559693	2355567	392	78834											
FLT4	2324	broad.mit.edu	37	chr5	180039731	180039731	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctgacacgtctcccacTcttgtccagctaccctcgtt	5	19	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180039731	A	A	180039731	1	1	71	0	1	0	0	0	0	0	0	0	6002	1566	54	5		5	FLT4	5	180039731	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1480038	180039731	875529	393	78835											
GMDS	2762	broad.mit.edu	37	chr6	1726733	1726733	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcccacttcattttcatTctttccttcccacctgtaag	3	15	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1726733	G	G	1726733	3	3	71	1	0	0	0	0	1	0	0	0	6550	1783	62	5	226	5	GMDS	6	1726733	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08		1726733	169388334	394	78836											
F13A1	2162	broad.mit.edu	37	chr6	6224818	6224818	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacccataaattctatagtGtcaacaggggctgctatgtc	8	10	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6224818	A	A	6224818	1	1	71	0	1	0	0	0	0	0	0	0	5383	1392	48	4		4	F13A1	6	6224818	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4498085	6224818	164890249	395	78837											
CAGE1	285782	broad.mit.edu	37	chr6	7374192	7374192	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcactttgctcccagtcaGgcatctcacagttctcccga	7	16	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7374192	A	A	7374192	3	1	71	1	0	0	0	0	1	0	0	0	2598	1000	35	4	1805	4	CAGE1	6	7374192	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1149374	7374192	163740875	396	78838											
HIST1H2AG	8969	broad.mit.edu	37	chr6	27100597	27100597	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagggtatgacaaggcgctTttatatagaatcgcttatgc	11	7	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27100597	A	A	27100597	1	1	71	0	1	0	0	0	0	0	0	0	7200	1856	64	5		5	HIST1H2AG	6	27100597	5'Flank	SNP	T	TCGA-17-Z042-01A-01W-0746-08	19726405	27100597	144014470	397	78839											
ZNF165	7718	broad.mit.edu	37	chr6	28053589	28053589	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttgcaggcctgggtacatGaacattacccagagagtgga	12	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28053589	T	T	28053589	4	4	71	1	0	0	0	0	0	1	0	0	17866	1291	45	3	333	3	ZNF165	6	28053589	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	952992	28053589	143061478	398	78840											
OR14J1	442191	broad.mit.edu	37	chr6	29274621	29274621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcattaccgtggaccgtcGtctccattcccccatgtatt	6	15	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29274621	A	A	29274621	3	1	71	1	0	0	0	0	1	0	0	0	11042	1145	40	4	157	4	OR14J1	6	29274621	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1221032	29274621	141840446	399	78841											
C6orf15	29113	broad.mit.edu	37	chr6	31080013	31080013	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgagctgaggcaagttggtCcccaagttttgggaaacttt	12	9	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31080013	A	A	31080013	2	1	71	1	0	0	0	0	0	0	0	1	2359	842	30	3		3	C6orf15	6	31080013	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1805392	31080013	140035054	400	78842											
CCHCR1	54535	broad.mit.edu	37	chr6	31118128	31118128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaggaaggagatctaagCaggttctggggcacattgac	13	8	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31118128	A	A	31118128	1	1	71	0	1	0	0	0	0	0	0	0	2905	725	25	3		3	CCHCR1	6	31118128	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	38115	31118128	139996939	401	78843											
SCUBE3	222663	broad.mit.edu	37	chr6	35208754	35208754	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgtacactacagtatttaTgtgcctataggcacactgtt	8	8	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35208754	C	C	35208754	1	2	71	0	1	0	0	0	0	0	0	0	14059	1479	51	5		5	SCUBE3	6	35208754	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4090626	35208754	135906313	402	78844											
TULP1	7287	broad.mit.edu	37	chr6	35477040	35477040	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcttctttatcaccgtAgctgcctcctcctcctcttc	4	17	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35477040	T	T	35477040	2	4	71	1	0	0	0	0	0	0	0	1	16899	407	15	5		5	TULP1	6	35477040	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	268286	35477040	135638027	403	78845											
DNAH8	1769	broad.mit.edu	37	chr6	38980530	38980530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtagcttgctgggtgctgCacatagccattcaaaggcga	13	10	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38980530	A	A	38980530	1	1	71	0	1	0	0	0	0	0	0	0	4647	725	25	3		3	DNAH8	6	38980530	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3503490	38980530	132134537	404	78846											
CYP39A1	51302	broad.mit.edu	37	chr6	46607308	46607308	+	Frame_Shift_Del	DEL	C	-	-													tgtaattcttcagtcagttgCccagtaaactgatggagatt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46607308	-	-	46607308	7	5	71	1	0	1	0	1	0	0	0	0	4210	726	26	0	1038	0	CYP39A1	6	46607308	Frame_Shift_Del	DEL	C	TCGA-17-Z042-01A-01W-0746-08	7626778	46607308	124507759	405	78847											
MEP1A	4224	broad.mit.edu	37	chr6	46794329	46794329	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttttgcctcagtcagaaTgttagttatcaaacttgaaa	7	6	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46794329	C	C	46794329	1	2	71	0	1	0	0	0	0	0	0	0	9568	1479	51	5		5	MEP1A	6	46794329	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	187021	46794329	124320738	406	78848											
ICK	22858	broad.mit.edu	37	chr6	52878805	52878805	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatgacaaataaggctttagGagaaaagtctagccaggaaa	10	5	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52878805	C	C	52878805	1	2	71	0	1	0	0	0	0	0	0	0	7554	1189	41	4		4	ICK	6	52878805	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6084476	52878805	118236262	407	78849											
GCM1	8521	broad.mit.edu	37	chr6	52996943	52996943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagcagaggaaaatgacCacacctggctgaaccatgtc	10	10	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52996943	A	A	52996943	1	1	71	0	1	0	0	0	0	0	0	0	6359	609	21	2		2	GCM1	6	52996943	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	118138	52996943	118118124	408	78850											
C6orf142	90523	broad.mit.edu	37	chr6	54034288	54034288	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctattattatttactttAttatttcagatgtataattg	4	3	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54034288	G	G	54034288	1	3	71	0	1	0	0	0	0	0	0	0	2356	464	16	5		5	C6orf142	6	54034288	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1037345	54034288	117080779	409	78851											
DST	667	broad.mit.edu	37	chr6	56391248	56391248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcgctcattgtcctcagCtaccattttctcaagtcctt	6	13	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56391248	A	A	56391248	3	1	71	1	0	0	0	0	1	0	0	0	4823	797	28	3	5484	3	DST	6	56391248	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2356960	56391248	114723819	410	78852											
DST	667	broad.mit.edu	37	chr6	56417961	56417961	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtccatttccttctgcagaGactttaacttggcaatagaa	8	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56417961	T	T	56417961	3	4	71	1	0	0	0	0	1	0	0	0	4823	942	33	3	7927	3	DST	6	56417961	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	26713	56417961	114697106	411	78853											
DST	667	broad.mit.edu	37	chr6	56418432	56418432	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagcttgcacaggccgacTgaaggtgctggacatgattc	14	9	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56418432	C	C	56418432	3	2	71	1	0	0	0	0	1	0	0	0	4823	1580	55	5	8398	5	DST	6	56418432	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	471	56418432	114696635	412	78854											
COL19A1	1310	broad.mit.edu	37	chr6	70916851	70916851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttttatgtcgttagCtctgggtttgccaggctcac	9	8	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70916851	A	A	70916851	3	1	71	1	0	0	0	0	1	0	0	0	3708	811	28	3	3500	3	COL19A1	6	70916851	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	14498419	70916851	100198216	413	78855											
SMAP1	60682	broad.mit.edu	37	chr6	71569798	71569798	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttttattccagtgcttgGactagttgtcacattaatga	8	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71569798	T	T	71569798	1	4	71	0	1	0	0	0	0	0	0	0	14880	1189	41	3		3	SMAP1	6	71569798	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	652947	71569798	99545269	414	78856											
FHL5	9457	broad.mit.edu	37	chr6	97052813	97052813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcctggtagggtctcaaGggggctcctgtctctaactg	13	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97052813	T	T	97052813	1	4	71	0	1	0	0	0	0	0	0	0	5938	1015	35	2		2	FHL5	6	97052813	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	25483015	97052813	74062254	415	78857											
MCHR2	84539	broad.mit.edu	37	chr6	100368931	100368931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaggatgtagagaaaaGggttaatgctgctgctggca	14	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100368931	T	T	100368931	3	4	71	1	0	0	0	0	1	0	0	0	9476	1000	35	2	118	2	MCHR2	6	100368931	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3316118	100368931	70746136	416	78858											
SLC22A16	85413	broad.mit.edu	37	chr6	110777820	110777820	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggatcagcattgcaagccAttttcggtcacagaccaggt	10	11	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110777820	T	T	110777820	3	4	71	1	0	0	0	0	1	0	0	0	14560	217	8	5	1307	5	SLC22A16	6	110777820	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	10408889	110777820	60337247	417	78859											
RPF2	84154	broad.mit.edu	37	chr6	111318525	111318525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcaatttgttagcagcagCgaattcatacgggtctgcag	11	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111318525	T	T	111318525	1	4	71	0	1	0	0	0	0	0	0	0	13658	783	27	4		4	RPF2	6	111318525	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	540705	111318525	59796542	418	78860											
LAMA4	3910	broad.mit.edu	37	chr6	112512973	112512973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcttcaaagatcaggttggGatctgaatttccactgcagt	9	8	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112512973	T	T	112512973	3	4	71	1	0	0	0	0	1	0	0	0	8680	1174	41	3	5024	3	LAMA4	6	112512973	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1194448	112512973	58602094	419	78861											
HS3ST5	222537	broad.mit.edu	37	chr6	114384122	114384122	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcagaggtggaagacagGtgataagtgacactgcacaa	13	6	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114384122	T	T	114384122	1	4	71	0	1	0	0	0	0	0	0	0	7435	1276	44	3		3	HS3ST5	6	114384122	5'Flank	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1871149	114384122	56730945	420	78862											
C6orf204	387119	broad.mit.edu	37	chr6	118845109	118845109	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaacatgtttacacaattaGtatactaaaatatttaaaga	4	4	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118845109	C	C	118845109	1	2	71	0	1	0	0	0	0	0	0	0	2376	1044	36	4		4	C6orf204	6	118845109	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4460987	118845109	52269958	421	78863											
LAMA2	3908	broad.mit.edu	37	chr6	129571130	129571130	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatcattcccactccgtactCcagtgatttctgcgtcttgc	6	14	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129571130	A	A	129571130	1	1	71	0	1	0	0	0	0	0	0	0	8678	870	30	3		3	LAMA2	6	129571130	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10726021	129571130	41543937	422	78864											
L3MBTL3	84456	broad.mit.edu	37	chr6	130460824	130460824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattatgagcattaaactgGgccctgctctcaaaattttc	6	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130460824	T	T	130460824	3	4	71	1	0	0	0	0	1	0	0	0	8665	1232	43	2	2351	2	L3MBTL3	6	130460824	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	889694	130460824	40654243	423	78865											
TMEM200A	114801	broad.mit.edu	37	chr6	130761629	130761629	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaaggcaagactctgccaGatcacagcagcatgtcaacc	9	12	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130761629	C	C	130761629	3	2	71	1	0	0	0	0	1	0	0	0	16246	942	33	4	64	4	TMEM200A	6	130761629	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	300805	130761629	40353438	424	78866											
PDE7B	27115	broad.mit.edu	37	chr6	136429774	136429774	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgggaaccatttttctcctGacatctggggttggtttcat	10	8	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136429774	A	A	136429774	1	1	71	0	1	0	0	0	0	0	0	0	11746	1305	45	4		4	PDE7B	6	136429774	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5668145	136429774	34685293	425	78867											
HEBP2	23593	broad.mit.edu	37	chr6	138724533	138724533	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcattgccaatggtcccGgctgcctcttctgttcacag	10	13	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138724533	T	T	138724533	1	4	71	0	1	0	0	0	0	0	0	0	7104	1131	39	1		1	HEBP2	6	138724533	5'Flank	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2294759	138724533	32390534	426	78868											
SHPRH	257218	broad.mit.edu	37	chr6	146264813	146264813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactgcgatttctcctggaCttataataataatagtaagg	7	6	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146264813	A	A	146264813	3	1	71	1	0	0	0	0	1	0	0	0	14404	564	20	3	3479	3	SHPRH	6	146264813	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7540280	146264813	24850254	427	78869											
UST	10090	broad.mit.edu	37	chr6	149208153	149208153	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttggatgaccatggaccAcctcctagtaaggtaagatc	9	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149208153	T	T	149208153	2	4	71	1	0	0	0	0	0	0	0	1	17220	146	6	5		5	UST	6	149208153	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2943340	149208153	21906914	428	78870											
PLG	5340	broad.mit.edu	37	chr6	161157864	161157864	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaatttgtctcgaattacaCcacaaaattgctaccttgtc	6	10	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161157864	T	T	161157864	1	4	71	0	1	0	0	0	0	0	0	0	12181	522	18	4		4	PLG	6	161157864	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	11949711	161157864	9957203	429	78871											
RPS6KA2	6196	broad.mit.edu	37	chr6	167241813	167241813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctttccccttcctcccCaactccacacccgccacctt	1	25	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167241813	A	A	167241813	1	1	71	0	1	0	0	0	0	0	0	0	13762	609	21	2		2	RPS6KA2	6	167241813	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6083949	167241813	3873254	430	78872											
TCP10	6953	broad.mit.edu	37	chr6	167791570	167791570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaatttttccaaaagcaGgttccaatgcctaaaagaca	7	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167791570	T	T	167791570	3	4	71	1	0	0	0	0	1	0	0	0	15832	1000	35	2	710	2	TCP10	6	167791570	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	549757	167791570	3323497	431	78873											
MLLT4	4301	broad.mit.edu	37	chr6	168271028	168271028	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctagttctatgaaataaccAtagcttattctttttttcat	4	7	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168271028	T	T	168271028	1	4	71	0	1	0	0	0	0	0	0	0	9722	232	8	5		5	MLLT4	6	168271028	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	479458	168271028	2844039	432	78874											
SDK1	221935	broad.mit.edu	37	chr7	4014040	4014040	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacgtggccctgactccatcGagcacgtctaggatcgtggt	12	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4014040	T	T	4014040	2	4	71	1	0	0	0	0	0	0	0	1	14081	1045	37	3		3	SDK1	7	4014040	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08		4014040	155124623	433	78875											
ICA1	3382	broad.mit.edu	37	chr7	8268292	8268292	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagacaggttctctgaatTgaatgaaacagctgtaataa	8	7	1	4	rs77256293	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8268292	A	A	8268292	2	1	71	1	0	0	0	0	0	0	0	1	7547	1799	63	5		5	ICA1	7	8268292	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4254252	8268292	150870371	434	78876											
HDAC9	9734	broad.mit.edu	37	chr7	18914095	18914095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccggttgcatttttactGtgcaggaccatcgtgaagcc	11	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18914095	T	T	18914095	1	4	71	0	1	0	0	0	0	0	0	0	7081	1392	48	3		3	HDAC9	7	18914095	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	10645803	18914095	140224568	435	78877											
DNAH11	8701	broad.mit.edu	37	chr7	21678642	21678642	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctatttcgtctcttctgctGatttacttgacattctctca	4	11	5	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21678642	T	T	21678642	3	4	71	1	0	0	0	0	1	0	0	0	4639	1290	45	3	5028	3	DNAH11	7	21678642	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2764547	21678642	137460021	436	78878											
DNAH11	8701	broad.mit.edu	37	chr7	21813389	21813389	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgtgttttcagccagtGcacaaagactctattagcct	8	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21813389	T	T	21813389	2	4	71	1	0	0	0	0	0	0	0	1	4639	1306	46	3		3	DNAH11	7	21813389	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	134747	21813389	137325274	437	78879											
C7orf30	115416	broad.mit.edu	37	chr7	23340607	23340607	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacttctacccgacacttaCatgccatggccttctacgtt	6	14	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23340607	T	T	23340607	3	4	71	1	0	0	0	0	1	0	0	0	2411	478	17	4	412	4	C7orf30	7	23340607	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1527218	23340607	135798056	438	78880											
SKAP2	8935	broad.mit.edu	37	chr7	26883590	26883590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctcataaaactaccacCcatatatatagcattgtttt	2	10	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26883590	A	A	26883590	1	1	71	0	1	0	0	0	0	0	0	0	14469	638	22	2		2	SKAP2	7	26883590	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3542983	26883590	132255073	439	78881											
HOXA2	3199	broad.mit.edu	37	chr7	27140754	27140754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccctctccagaagggccCcagagacgctaagggcttgc	11	15	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27140754	A	A	27140754	3	1	71	1	0	0	0	0	1	0	0	0	7359	623	22	2	412	2	HOXA2	7	27140754	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	257164	27140754	131997909	440	78882											
CREB5	9586	broad.mit.edu	37	chr7	28844191	28844191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattctccttcttaacagtGcaagctctaatgctggggtc	8	10	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28844191	T	T	28844191	1	4	71	0	1	0	0	0	0	0	0	0	3892	1334	46	3		3	CREB5	7	28844191	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1703437	28844191	130294472	441	78883											
GARS	2617	broad.mit.edu	37	chr7	30670943	30670943	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtcatgttttctggcaTtttggtaatgacgttatgct	9	6	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30670943	C	C	30670943	1	2	71	0	1	0	0	0	0	0	0	0	6304	1508	52	5		5	GARS	7	30670943	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1826752	30670943	128467720	442	78884											
C7orf16	10842	broad.mit.edu	37	chr7	31735162	31735162	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaatgtacaggccaccctGaatgttgagtcagaccaaaa	8	9	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31735162	A	A	31735162	2	1	71	1	0	0	0	0	0	0	0	1	2403	1277	45	4		4	C7orf16	7	31735162	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1064219	31735162	127403501	443	78885											
ELMO1	9844	broad.mit.edu	37	chr7	37296265	37296265	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggggagaggaggacaaaggGaagggagggagagaagggag	24	1	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37296265	A	A	37296265	1	1	71	0	1	0	0	0	0	0	0	0	5107	1189	41	4		4	ELMO1	7	37296265	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5561103	37296265	121842398	444	78886											
AMPH	273	broad.mit.edu	37	chr7	38530637	38530637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccttccctttatagacaCagagtaaaatacctttatgt	4	9	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38530637	A	A	38530637	1	1	71	0	1	0	0	0	0	0	0	0	588	493	17	3		3	AMPH	7	38530637	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1234372	38530637	120608026	445	78887											
H2AFV	94239	broad.mit.edu	37	chr7	44880488	44880488	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatatacaacagacattcCtgtacaaacctctgcagtga	6	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44880488	A	A	44880488	1	1	71	0	1	0	0	0	0	0	0	0	6992	696	24	2		2	H2AFV	7	44880488	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6349851	44880488	114258175	446	78888											
TNS3	64759	broad.mit.edu	37	chr7	47467858	47467858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacagccttcagccccatGcaggcccagcttttagcacc	8	17	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47467858	T	T	47467858	1	4	71	0	1	0	0	0	0	0	0	0	16467	1334	46	3		3	TNS3	7	47467858	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2587370	47467858	111670805	447	78889											
PSPH	5723	broad.mit.edu	37	chr7	56085062	56085062	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttcgctcctgtaggcgacTtaccagctccctgcaaaata	7	13	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56085062	A	A	56085062	3	1	71	1	0	0	0	0	1	0	0	0	12823	1609	56	5	403	5	PSPH	7	56085062	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	8617204	56085062	103053601	448	78890											
ZNF479	90827	broad.mit.edu	37	chr7	57188854	57188854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgggtgaaatgggaacGcgtaactgaaagacacaaaa	12	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188854	T	T	57188854	3	4	71	1	0	0	0	0	1	0	0	0	18060	1087	38	3	1310	3	ZNF479	7	57188854	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1103792	57188854	101949809	449	78891											
AUTS2	26053	broad.mit.edu	37	chr7	70255417	70255418	+	Missense_Mutation	DNP	GG	TT	TT													tttccactgggaccccatccGggaccccttgagggatcctt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	70255418	TT	TT	70255417	3	4	71	1	0	0	0	0	1	0	0	0	1230	1116	39	1	3434	1	AUTS2	7	70255417	Missense_Mutation	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	13066563	70255417	88883246	450	78892											
PCLO	27445	broad.mit.edu	37	chr7	82508748	82508748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtcccgggatttctttaCcacccacaattctaattcct	4	13	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82508748	A	A	82508748	3	1	71	1	0	0	0	0	1	0	0	0	11677	507	18	3	1950	3	PCLO	7	82508748	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	12253331	82508748	76629915	451	78893											
SEMA3A	10371	broad.mit.edu	37	chr7	83590815	83590815	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgccgacgttgttttcGgtcccttttccaaacttgtt	7	12	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83590815	T	T	83590815	2	4	71	1	0	0	0	0	0	0	0	1	14137	1124	39	1		1	SEMA3A	7	83590815	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1082067	83590815	75547848	452	78894											
C7orf63	79846	broad.mit.edu	37	chr7	89887465	89887465	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaactggtacagtgttaTcagaatggacttgtatcctt	9	6	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89887465	C	C	89887465	2	2	71	1	0	0	0	0	0	0	0	1	2434	1442	50	5		5	C7orf63	7	89887465	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	6296650	89887465	69251198	453	78895											
KRIT1	889	broad.mit.edu	37	chr7	91830661	91830661	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctcattttattttccatgCtatggatctgaaaacaagta	6	7	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91830661	G	G	91830661	3	3	71	1	0	0	0	0	1	0	0	0	8516	797	28	4	116	4	KRIT1	7	91830661	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1943196	91830661	67308002	454	78896											
SAMD9	54809	broad.mit.edu	37	chr7	92735075	92735075	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctttacccttttgtttTtgctttgaagtttctctacg	5	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92735075	C	C	92735075	2	2	71	1	0	0	0	0	0	0	0	1	13937	1838	64	5		5	SAMD9	7	92735075	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	904414	92735075	66403588	455	78897											
HEPACAM2	253012	broad.mit.edu	37	chr7	92848713	92848713	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagagggcctgacctctgAcgccatggacagtgtgtgat	15	9	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92848713	G	G	92848713	3	3	71	1	0	0	0	0	1	0	0	0	7120	275	10	5	1293	5	HEPACAM2	7	92848713	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	113638	92848713	66289950	456	78898											
COL1A2	1278	broad.mit.edu	37	chr7	94056818	94056818	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttatttatttatgtgaacttGattattttttactgatgaga	6	2	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94056818	T	T	94056818	1	4	71	0	1	0	0	0	0	0	0	0	3710	1305	45	3		3	COL1A2	7	94056818	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1208105	94056818	65081845	457	78899											
TMEM130	222865	broad.mit.edu	37	chr7	98449144	98449144	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggtccctgaaggtgtgGgtcaggttgtacgctgtgct	16	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98449144	T	T	98449144	2	4	71	1	0	0	0	0	0	0	0	1	16166	1219	43	2		2	TMEM130	7	98449144	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4392326	98449144	60689519	458	78900											
TFR2	7036	broad.mit.edu	37	chr7	100228509	100228509	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgatactggacacacagcaTacctggctctgagcggcctt	11	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100228509	A	A	100228509	1	1	71	0	1	0	0	0	0	0	0	0	15934	1421	49	5		5	TFR2	7	100228509	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1779365	100228509	58910154	459	78901											
ACTL6B	51412	broad.mit.edu	37	chr7	100253001	100253001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacccagattgtggggagcGggctccttttctgtcaggag	15	9	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100253001	T	T	100253001	1	4	71	0	1	0	0	0	0	0	0	0	199	1131	39	1		1	ACTL6B	7	100253001	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	24492	100253001	58885662	460	78902											
RELN	5649	broad.mit.edu	37	chr7	103270350	103270350	+	Intron	SNP	G	T	T													tcctcatgttctaattcctaGtgcaaattgtaacaataaca					rs6977502		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103270350	T	T	103270350	1	4	71	0	1	0	0	0	0	0	0	0	13328	1044	36	3		3	RELN	7	103270350	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3017349	103270350	55868313	461	78903	360	2									
RELN	5649	broad.mit.edu	37	chr7	103270352	103270352	+	Intron	SNP	G	T	T													ctcatgttctaattcctagtGcaaattgtaacaataacaat							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103270352	T	T	103270352	1	4	71	0	1	0	0	0	0	0	0	0	13328	1334	46	3		3	RELN	7	103270352	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2	103270352	55868311	462	78904	360	2									
GPR22	2845	broad.mit.edu	37	chr7	107115572	107115572	+	Missense_Mutation	SNP	C	A	A													attgtgttttttagtcatggCttatggaacaactatatttc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107115572	A	A	107115572	3	1	71	1	0	0	0	0	1	0	0	0	6747	797	28	3	1069	3	GPR22	7	107115572	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3845220	107115572	52023091	463	78905	361	2									
GPR22	2845	broad.mit.edu	37	chr7	107115574	107115574	+	Missense_Mutation	SNP	T	A	A													tgtgttttttagtcatggctTatggaacaactatatttcac							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107115574	A	A	107115574	3	1	71	1	0	0	0	0	1	0	0	0	6747	1754	61	5	1071	5	GPR22	7	107115574	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2	107115574	52023089	464	78906	361	2									
LAMB1	3912	broad.mit.edu	37	chr7	107601760	107601761	+	Missense_Mutation	DNP	GG	TT	TT													tctcaaagcacaccggccgaGgaaggacgacatatctgccc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107601761	TT	TT	107601760	3	4	71	1	0	0	0	0	1	0	0	0	8682	1000	35	2	3432	2	LAMB1	7	107601760	Missense_Mutation	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	486186	107601760	51536903	465	78907											
LRRN3	54674	broad.mit.edu	37	chr7	110763521	110763521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaataccagataacgcCttggttggactggaaaactt	9	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763521	A	A	110763521	2	1	71	1	0	0	0	0	0	0	0	1	9123	668	24	2		2	LRRN3	7	110763521	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3161761	110763521	48375142	466	78908											
GPR85	54329	broad.mit.edu	37	chr7	112724005	112724006	+	Missense_Mutation	DNP	CC	AA	AA													gtttgcattttgcctgatgcCcagcaaggtgggtggtgtgg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	112724006	AA	AA	112724005	3	1	71	1	0	0	0	0	1	0	0	0	6780	623	22	2	344	2	GPR85	7	112724005	Missense_Mutation	DNP	CC	TCGA-17-Z042-01A-01W-0746-08	1960484	112724005	46414658	467	78909											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432054	117432054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgttactgggaagtgggGgtgtgctactggttggatct	17	6	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117432054	T	T	117432054	3	4	71	1	0	0	0	0	1	0	0	0	4079	1232	43	2	3875	2	CTTNBP2	7	117432054	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4708049	117432054	41706609	468	78910											
C7orf58	79974	broad.mit.edu	37	chr7	120739999	120739999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgaaacgacagtccttGctccacatgaaacaatcttt	7	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120739999	T	T	120739999	3	4	71	1	0	0	0	0	1	0	0	0	2430	1319	46	3	791	3	C7orf58	7	120739999	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3307945	120739999	38398664	469	78911											
PTPRZ1	5803	broad.mit.edu	37	chr7	121657831	121657831	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggggtttcaccatgttGgccaggctggtcttgaactc	13	9	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121657831	A	A	121657831	1	1	71	0	1	0	0	0	0	0	0	0	12922	1363	47	4		4	PTPRZ1	7	121657831	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	917832	121657831	37480832	470	78912											
GRM8	2918	broad.mit.edu	37	chr7	126544734	126544734	+	Missense_Mutation	SNP	C	A	A													gtgactgagcaatgcaaacaCcacctatttaaaaaagaagg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126544734	A	A	126544734	3	1	71	1	0	0	0	0	1	0	0	0	6869	507	18	3	2077	3	GRM8	7	126544734	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4886903	126544734	32593929	471	78913	362	2									
GRM8	2918	broad.mit.edu	37	chr7	126544739	126544739	+	Splice_Site	SNP	T	G	G													tgagcaatgcaaacaccaccTatttaaaaaagaagggaggt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126544739	G	G	126544739	5	3	71	1	0	0	0	0	0	0	1	0	6869	1536	53	5	2082	5	GRM8	7	126544739	Splice_Site	SNP	T	TCGA-17-Z042-01A-01W-0746-08	5	126544739	32593924	472	78914	362	2									
FLNC	2318	broad.mit.edu	37	chr7	128490515	128490515	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctggtcatccccttcgcGgtgcagaaaggggagctcac	12	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128490515	T	T	128490515	2	4	71	1	0	0	0	0	0	0	0	1	5993	1103	39	1		1	FLNC	7	128490515	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1945776	128490515	30648148	473	78915											
CPA5	93979	broad.mit.edu	37	chr7	129987584	129987584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctccgcagcttcctcCgcccctccctgtgtttttct	5	19	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129987584	A	A	129987584	1	1	71	0	1	0	0	0	0	0	0	0	3825	667	23	1		1	CPA5	7	129987584	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1497069	129987584	29151079	474	78916											
TSGA13	114960	broad.mit.edu	37	chr7	130356376	130356376	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttaacttccatgctataGggaaaaatagtctccaggac	8	8	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130356376	T	T	130356376	1	4	71	0	1	0	0	0	0	0	0	0	16744	1015	35	2		2	TSGA13	7	130356376	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	368792	130356376	28782287	475	78917											
LRGUK	136332	broad.mit.edu	37	chr7	133859480	133859480	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcaagaagtacttttgAtaaaagaatatcaggaatgt	7	4	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133859480	T	T	133859480	1	4	71	0	1	0	0	0	0	0	0	0	9030	348	12	5		5	LRGUK	7	133859480	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	3503104	133859480	25279183	476	78918											
AKR1B10	57016	broad.mit.edu	37	chr7	134222842	134222842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtaattattagcgattGtacctgaagccacagtgagc	9	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134222842	T	T	134222842	1	4	71	0	1	0	0	0	0	0	0	0	467	1392	48	3		3	AKR1B10	7	134222842	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	363362	134222842	24915821	477	78919											
DGKI	9162	broad.mit.edu	37	chr7	137304455	137304456	+	Intron	DNP	GG	TT	TT													aagctaagcacagggccttgGggatgagtgaactgaggtca							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	137304456	TT	TT	137304455	1	4	71	0	1	0	0	0	0	0	0	0	4511	1247	43	2		2	DGKI	7	137304455	Intron	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	3081613	137304455	21834208	478	78920											
TRPV6	55503	broad.mit.edu	37	chr7	142572354	142572354	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggtaccacctccccgcTggcactgatgagccgcatca	10	16	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142572354	C	C	142572354	3	2	71	1	0	0	0	0	1	0	0	0	16725	1580	55	5	855	5	TRPV6	7	142572354	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	5267899	142572354	16566309	479	78921											
SSPO	23145	broad.mit.edu	37	chr7	149489266	149489266	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctctggccaggtcacgtgCccacctgattggccctgcgg	12	15	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149489266	G	G	149489266	3	3	71	1	0	0	0	0	1	0	0	0	15307	747	26	4	5649	4	SSPO	7	149489266	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6916912	149489266	9649397	480	78922											
GALNTL5	168391	broad.mit.edu	37	chr7	151700113	151700114	+	Intron	DNP	CT	TC	TC													gagacccagggggaaaaagcCtccagagattattctttcaa							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	151700114	TC	TC	151700113	1	4	71	0	1	0	0	0	0	0	0	0	6286	696	24	4		4	GALNTL5	7	151700113	Intron	DNP	CT	TCGA-17-Z042-01A-01W-0746-08	2210847	151700113	7438550	481	78923											
MLL3	58508	broad.mit.edu	37	chr7	151970872	151970872	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgccggctcctgcagcAcaaggataatgatacatctg	11	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151970872	T	T	151970872	4	4	71	1	0	0	0	0	0	1	0	0	9715	157	6	5	14017	5	MLL3	7	151970872	Nonsense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	270759	151970872	7167791	482	78924											
PTPRN2	5799	broad.mit.edu	37	chr7	157931198	157931198	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtccttcaggagggtatgaAtccgtgctcctaggggcaca	14	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157931198	T	T	157931198	3	4	71	1	0	0	0	0	1	0	0	0	12916	101	4	5	2195	5	PTPRN2	7	157931198	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	5960326	157931198	1207465	483	78925											
PTPRN2	5799	broad.mit.edu	37	chr7	158308793	158308793	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccggccgcctggccatctCttgcctcaaaggcctcctaa	8	19	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158308793	T	T	158308793	1	4	71	0	1	0	0	0	0	0	0	0	12916	928	32	4		4	PTPRN2	7	158308793	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	377595	158308793	829870	484	78926											
NCAPG2	54892	broad.mit.edu	37	chr7	158441188	158441189	+	Intron	INS	-	A	A													tcattaaagtcaaatggactINSaaaaaaaaaaaagaatggac					rs138968761		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158441189	A	A	158441188	6	5	71	0	1	1	1	0	0	0	0	0	10303	1537	53	0		0	NCAPG2	7	158441188	Intron	INS	-	TCGA-17-Z042-01A-01W-0746-08	132395	158441188	697475	485	78927											
MYOM2	9172	broad.mit.edu	37	chr8	2020395	2020395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgctctctgcccttcgGccctgaaagcctccatcgtt	8	15	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2020395	T	T	2020395	1	4	71	0	1	0	0	0	0	0	0	0	10186	1218	42	3		3	MYOM2	8	2020395	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08		2020395	144343627	486	78928											
MCPH1	79648	broad.mit.edu	37	chr8	6390035	6390035	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaacagtgttagaaggcaGtcattagtcaaatgaccgga	11	6	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6390035	A	A	6390035	1	1	71	0	1	0	0	0	0	0	0	0	9491	1044	36	4		4	MCPH1	8	6390035	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4369640	6390035	139973987	487	78929											
DEFB104A	140596	broad.mit.edu	37	chr8	7698445	7698445	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgggggtccaggaaaacctCtaccaccatgcactagcatt	9	12	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7698445	G	G	7698445	1	3	71	0	1	0	0	0	0	0	0	0	4430	928	32	4		4	DEFB104A	8	7698445	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1308410	7698445	138665577	488	78930											
RP1L1	94137	broad.mit.edu	37	chr8	10467120	10467120	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctctgcagccccctgGgtgggttgggcctgcgtgtg	15	14	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467120	T	T	10467120	2	4	71	1	0	0	0	0	0	0	0	1	13644	1219	43	2		2	RP1L1	8	10467120	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2768675	10467120	135896902	489	78931											
RP1L1	94137	broad.mit.edu	37	chr8	10480614	10480614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaggtgatcttcttgGctggcgtgaccttggtgacc	15	8	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10480614	T	T	10480614	3	4	71	1	0	0	0	0	1	0	0	0	13644	1203	42	3	7116	3	RP1L1	8	10480614	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	13494	10480614	135883408	490	78932											
SGCZ	137868	broad.mit.edu	37	chr8	13959885	13959885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaactttctgggactcacCtccccttctgtagattgcag	7	14	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13959885	A	A	13959885	3	1	71	1	0	0	0	0	1	0	0	0	14317	695	24	2	202	2	SGCZ	8	13959885	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3479271	13959885	132404137	491	78933											
MTUS1	57509	broad.mit.edu	37	chr8	17542025	17542025	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggctggatacataagcttcGaggattcttttgcctgctct	10	9	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17542025	A	A	17542025	4	1	71	1	0	0	0	0	0	1	0	0	10059	1066	37	4	1198	4	MTUS1	8	17542025	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3582140	17542025	128821997	492	78934											
NKX3-1	4824	broad.mit.edu	37	chr8	23538980	23538980	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggccaggtgggcccgTtcaggggccgacaggtactt	15	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23538980	C	C	23538980	2	2	71	1	0	0	0	0	0	0	0	1	10550	1722	60	5		5	NKX3-1	8	23538980	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	5996955	23538980	122825042	493	78935											
TEX15	56154	broad.mit.edu	37	chr8	30704309	30704309	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttagaataatgctgatcaCtattctcccttcctgtggtg	7	11	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30704309	G	G	30704309	3	3	71	1	0	0	0	0	1	0	0	0	15901	565	20	4	6160	4	TEX15	8	30704309	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7165329	30704309	115659713	494	78936											
WRN	7486	broad.mit.edu	37	chr8	30999160	30999160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgacttaattttgtttcCcactccacattaaaagatcc	4	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30999160	T	T	30999160	1	4	71	0	1	0	0	0	0	0	0	0	17529	638	22	4		4	WRN	8	30999160	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	294851	30999160	115364862	495	78937											
KCNU1	157855	broad.mit.edu	37	chr8	36691147	36691147	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgttcatttctggatctgcAatgaagtgggaggatctgag	13	6	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36691147	C	C	36691147	2	2	71	1	0	0	0	0	0	0	0	1	8163	117	5	5		5	KCNU1	8	36691147	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	5691987	36691147	109672875	496	78938											
KCNU1	157855	broad.mit.edu	37	chr8	36746757	36746757	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatggttgctctgctgaacTaccgtaaggatggtcagtat	12	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36746757	A	A	36746757	1	1	71	0	1	0	0	0	0	0	0	0	8163	1537	53	5		5	KCNU1	8	36746757	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	55610	36746757	109617265	497	78939											
KCNU1	157855	broad.mit.edu	37	chr8	36780061	36780061	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggtggactggaagggtccCtccaagaaacaaatctgcat	11	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36780061	T	T	36780061	3	4	71	1	0	0	0	0	1	0	0	0	8163	681	24	4	2744	4	KCNU1	8	36780061	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	33304	36780061	109583961	498	78940											
ANK1	286	broad.mit.edu	37	chr8	41525923	41525923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttacagacaccaggacCttctcgtactcctgagatcc	6	15	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41525923	A	A	41525923	3	1	71	1	0	0	0	0	1	0	0	0	620	680	24	2	731	2	ANK1	8	41525923	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4745862	41525923	104838099	499	78941											
PXDNL	137902	broad.mit.edu	37	chr8	52366079	52366079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccttctgctcccatacCttgtacaattatgtttgctg	6	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52366079	A	A	52366079	3	1	71	1	0	0	0	0	1	0	0	0	12956	695	24	2	3198	2	PXDNL	8	52366079	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10840156	52366079	93997943	500	78942											
CHD7	55636	broad.mit.edu	37	chr8	61655383	61655383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgtccatttataggcatGtcctcggcaccaagggaatt	9	11	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61655383	T	T	61655383	3	4	71	1	0	0	0	0	1	0	0	0	3361	1377	48	3	1394	3	CHD7	8	61655383	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9289304	61655383	84708639	501	78943											
MSC	9242	broad.mit.edu	37	chr8	72754983	72754983	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaccacgaatggccatgtCtgtaaatcaaaaagaacgtg	10	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72754983	A	A	72754983	1	1	71	0	1	0	0	0	0	0	0	0	9962	927	32	3		3	MSC	8	72754983	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	11099600	72754983	73609039	502	78944											
KCNB2	9312	broad.mit.edu	37	chr8	73480016	73480016	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaacaggaagacttcaaggtCgacactttcccttcctccag	7	13	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73480016	A	A	73480016	4	1	71	1	0	0	0	0	0	1	0	0	8083	893	31	3	49	3	KCNB2	8	73480016	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	725033	73480016	72884006	503	78945											
PI15	51050	broad.mit.edu	37	chr8	75737719	75737719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatcataatcaagttcggGgcaaagtgttcccaccggca	9	10	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75737719	T	T	75737719	3	4	71	1	0	0	0	0	1	0	0	0	11963	1232	43	2	237	2	PI15	8	75737719	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2257703	75737719	70626303	504	78946											
HNF4G	3174	broad.mit.edu	37	chr8	76472657	76472657	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccattaactggacaaactaTacttttaggtcccatgtcaa	5	11	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76472657	C	C	76472657	3	2	71	1	0	0	0	0	1	0	0	0	7321	1406	49	5	1206	5	HNF4G	8	76472657	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	734938	76472657	69891365	505	78947											
ZFHX4	79776	broad.mit.edu	37	chr8	77616393	77616393	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacatcaaagctatgtggaAcgacacaacttgataatgag	9	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77616393	G	G	77616393	3	3	71	1	0	0	0	0	1	0	0	0	17761	43	2	5	72	5	ZFHX4	8	77616393	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1143736	77616393	68747629	506	78948											
CA13	377677	broad.mit.edu	37	chr8	86335203	86335203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatttggcatgtttttgcaGtggctggtaccggttgttcc	12	8	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86335203	T	T	86335203	1	4	71	0	1	0	0	0	0	0	0	0	2540	1044	36	3		3	CA13	8	86335203	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8718810	86335203	60028819	507	78949											
CNGB3	54714	broad.mit.edu	37	chr8	87670276	87670276	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcctgcatgagctccataAagtggctctgcagcttctcc	8	14	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87670276	T	T	87670276	1	4	71	0	1	0	0	0	0	0	0	0	3633	29	1	5		5	CNGB3	8	87670276	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1335073	87670276	58693746	508	78950											
DCAF4L2	138009	broad.mit.edu	37	chr8	88886052	88886052	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctgcatgcagcttacacGcagctcgcgagctatacggc	10	15	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88886052	A	A	88886052	3	1	71	1	0	0	0	0	1	0	0	0	4305	1087	38	4	1043	4	DCAF4L2	8	88886052	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1215776	88886052	57477970	509	78951											
SLC26A7	115111	broad.mit.edu	37	chr8	92352396	92352396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatctgaattctctgggCgtaaatgccagttaaatgca	9	7	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92352396	A	A	92352396	1	1	71	0	1	0	0	0	0	0	0	0	14636	783	27	3		3	SLC26A7	8	92352396	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3466344	92352396	54011626	510	78952											
MTERFD1	51001	broad.mit.edu	37	chr8	97270803	97270803	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggctgagcagaaaagccaTgtaacagtgttcttgctggt	13	7	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97270803	C	C	97270803	3	2	71	1	0	0	0	0	1	0	0	0	10013	1464	51	5	1165	5	MTERFD1	8	97270803	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4918407	97270803	49093219	511	78953											
PGCP	10404	broad.mit.edu	37	chr8	98078430	98078430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caacttttggatccaagctgGagtgcctggtaagaccaaaa	10	9	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98078430	T	T	98078430	3	4	71	1	0	0	0	0	1	0	0	0	11881	1174	41	3	1269	3	PGCP	8	98078430	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	807627	98078430	48285592	512	78954											
GRHL2	79977	broad.mit.edu	37	chr8	102570665	102570665	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaactgccttggcaccagTgaagcccagagtaatttgag	11	9	0	4	rs140106332	byFrequency	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102570665	A	A	102570665	3	1	71	1	0	0	0	0	1	0	0	0	6830	1693	59	5	317	5	GRHL2	8	102570665	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4492235	102570665	43793357	513	78955											
RIMS2	9699	broad.mit.edu	37	chr8	104664363	104664363	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttggtgtccattttatatGaacacaaatttgtaaataga	6	4	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104664363	T	T	104664363	1	4	71	0	1	0	0	0	0	0	0	0	13479	1305	45	3		3	RIMS2	8	104664363	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2093698	104664363	41699659	514	78956											
RIMS2	9699	broad.mit.edu	37	chr8	105001565	105001565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggggcttcgagggacccGcactatgaccggacattata	12	11	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105001565	T	T	105001565	3	4	71	1	0	0	0	0	1	0	0	0	13479	1087	38	3	3152	3	RIMS2	8	105001565	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	337202	105001565	41362457	515	78957											
DPYS	1807	broad.mit.edu	37	chr8	105404795	105404795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaatctggaaatcccgaaCtgacctatcagtctgcaagg	8	12	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105404795	A	A	105404795	1	1	71	0	1	0	0	0	0	0	0	0	4786	580	20	3		3	DPYS	8	105404795	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	403230	105404795	40959227	516	78958											
DPYS	1807	broad.mit.edu	37	chr8	105440401	105440401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtatacagaatatgttaGgaggaaactgccataacctt	9	6	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105440401	T	T	105440401	1	4	71	0	1	0	0	0	0	0	0	0	4786	1015	35	2		2	DPYS	8	105440401	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	35606	105440401	40923621	517	78959											
PKHD1L1	93035	broad.mit.edu	37	chr8	110455413	110455413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtgatatttctggagcCggtagcagataactgggtct	13	6	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110455413	A	A	110455413	1	1	71	0	1	0	0	0	0	0	0	0	12067	667	23	1		1	PKHD1L1	8	110455413	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5015012	110455413	35908609	518	78960											
CSMD3	114788	broad.mit.edu	37	chr8	113418831	113418831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaattgctatggatccatGgagaatatatcctggattac	8	8	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113418831	T	T	113418831	3	4	71	1	0	0	0	0	1	0	0	0	3980	1348	47	2	5540	2	CSMD3	8	113418831	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2963418	113418831	32945191	519	78961											
CSMD3	114788	broad.mit.edu	37	chr8	113529289	113529289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactggtgggctgggctgcCagaagtaccgattttctacc	13	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113529289	A	A	113529289	3	1	71	1	0	0	0	0	1	0	0	0	3980	595	21	2	6569	2	CSMD3	8	113529289	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	110458	113529289	32834733	520	78962											
CSMD3	114788	broad.mit.edu	37	chr8	113841824	113841824	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcttctgctggtagtaGtgggagcgatcaatgtaaaa	12	6	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113841824	C	C	113841824	1	2	71	0	1	0	0	0	0	0	0	0	3980	1044	36	4		4	CSMD3	8	113841824	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	312535	113841824	32522198	521	78963											
FER1L6	654463	broad.mit.edu	37	chr8	125082612	125082612	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagattttcccaaggggcatAtatcaaggctggttttggag	12	7	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125082612	T	T	125082612	1	4	71	0	1	0	0	0	0	0	0	0	5872	464	16	5		5	FER1L6	8	125082612	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	11240788	125082612	21281410	522	78964											
TG	7038	broad.mit.edu	37	chr8	134128756	134128756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcaggggtgggttgggGgcccagggggccccttgctg	21	11	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134128756	T	T	134128756	1	4	71	0	1	0	0	0	0	0	0	0	15936	1247	43	2		2	TG	8	134128756	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9046144	134128756	12235266	523	78965											
ZFAT	57623	broad.mit.edu	37	chr8	135533236	135533236	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgcaaacaggacactTcaaaccacctgaaagcacag	7	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135533236	A	A	135533236	4	1	71	1	0	0	0	0	0	1	0	0	17758	1792	62	5	623	5	ZFAT	8	135533236	Nonsense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1404480	135533236	10830786	524	78966											
FAM135B	51059	broad.mit.edu	37	chr8	139163755	139163755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaacggaatgggtcacaGtggggcacacagtgcctgct	14	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139163755	T	T	139163755	3	4	71	1	0	0	0	0	1	0	0	0	5495	1029	36	3	1289	3	FAM135B	8	139163755	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3630519	139163755	7200267	525	78967											
FAM135B	51059	broad.mit.edu	37	chr8	139164945	139164945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctactaccactttgcttagCccagtcctgtctaatccata	4	15	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139164945	A	A	139164945	2	1	71	1	0	0	0	0	0	0	0	1	5495	726	26	3		3	FAM135B	8	139164945	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1190	139164945	7199077	526	78968											
COL22A1	169044	broad.mit.edu	37	chr8	139712386	139712386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggtgtgaacagggatGtctgaaaaggaaaccacaga	14	5	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139712386	A	A	139712386	3	1	71	1	0	0	0	0	1	0	0	0	3713	1391	48	4	2455	4	COL22A1	8	139712386	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	547441	139712386	6651636	527	78969											
FLJ43860	389690	broad.mit.edu	37	chr8	142469616	142469616	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagtggcaagaaaaggGgctttgcctttgtaaccttg	14	7	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142469616	T	T	142469616	1	4	71	0	1	0	0	0	0	0	0	0	5987	1247	43	2		2	FLJ43860	8	142469616	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2757230	142469616	3894406	528	78970											
RFX3	5991	broad.mit.edu	37	chr9	3270426	3270426	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaccaaagcctggtacatCccatggtcacagttacacat	6	14	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3270426	A	A	3270426	2	1	71	1	0	0	0	0	0	0	0	1	13372	842	30	3		3	RFX3	9	3270426	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08		3270426	137943005	529	78971											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5563037	5563037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccgaagtcccaggccacaGtgaacatttgggcttcgcta	10	12	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5563037	T	T	5563037	1	4	71	0	1	0	0	0	0	0	0	0	11712	1044	36	3		3	PDCD1LG2	9	5563037	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2292611	5563037	135650394	530	78972											
GLDC	2731	broad.mit.edu	37	chr9	6605162	6605162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctctctccacgagttccGtaaagtcttccaccttcccc	6	17	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6605162	T	T	6605162	3	4	71	1	0	0	0	0	1	0	0	0	6497	1145	40	3	2312	3	GLDC	9	6605162	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1042125	6605162	134608269	531	78973											
PTPRD	5789	broad.mit.edu	37	chr9	8500934	8500934	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttccccatccactgcagTgtacttgatggagtattcag	8	11	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8500934	G	G	8500934	3	3	71	1	0	0	0	0	1	0	0	0	12907	1696	59	5	3950	5	PTPRD	9	8500934	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1895772	8500934	132712497	532	78974											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18622307	18622307	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgtggggtctgcaacggaGatgggtccacctgccggctg	16	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18622307	A	A	18622307	3	1	71	1	0	0	0	0	1	0	0	0	274	942	33	4	559	4	ADAMTSL1	9	18622307	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	10121373	18622307	122591124	533	78975											
MLLT3	4300	broad.mit.edu	37	chr9	20413948	20413948	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcctctgagctactctttTtcctttttttggctgagagt	8	9	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20413948	C	C	20413948	3	2	71	1	0	0	0	0	1	0	0	0	9721	1841	64	5	838	5	MLLT3	9	20413948	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1791641	20413948	120799483	534	78976											
DDX58	23586	broad.mit.edu	37	chr9	32459565	32459565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtacaacatatatagcaAgaaacaggcacagatacgta	8	7	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32459565	G	G	32459565	1	3	71	0	1	0	0	0	0	0	0	0	4408	87	3	5		5	DDX58	9	32459565	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	12045617	32459565	108753866	535	78977											
OR2S2	56656	broad.mit.edu	37	chr9	35957691	35957691	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggcagccttgctcatgatCacggagtacctaagggggtt	13	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35957691	A	A	35957691	2	1	71	1	0	0	0	0	0	0	0	1	11109	813	29	3		3	OR2S2	9	35957691	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3498126	35957691	105255740	536	78978											
ALDH1A1	216	broad.mit.edu	37	chr9	75531803	75531803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatactttattcctgtgccCtgaaaatgctatcctttcta	6	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75531803	A	A	75531803	1	1	71	0	1	0	0	0	0	0	0	0	490	696	24	2		2	ALDH1A1	9	75531803	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	39574112	75531803	65681628	537	78979											
TRPM6	140803	broad.mit.edu	37	chr9	77353447	77353447	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccattgttgttgttatacttCcggaactcccctgtcatata	6	11	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77353447	A	A	77353447	2	1	71	1	0	0	0	0	0	0	0	1	16715	842	30	3		3	TRPM6	9	77353447	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1821644	77353447	63859984	538	78980											
TLE4	7091	broad.mit.edu	37	chr9	82337870	82337870	+	Intron	DEL	A	-	-													tttttcaaaaccctttacctAtaggcaaatggtttgtaagc					rs113916919	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82337870	-	-	82337870	6	5	71	0	1	1	0	1	0	0	0	0	16064	464	16	0		0	TLE4	9	82337870	Intron	DEL	A	TCGA-17-Z042-01A-01W-0746-08	4984423	82337870	58875561	539	78981											
C9orf79	286234	broad.mit.edu	37	chr9	90502493	90502493	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagtgggcaagggctgaaGatgccctgcaggcactgaaa	14	11	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90502493	A	A	90502493	3	1	71	1	0	0	0	0	1	0	0	0	2523	942	33	4	3105	4	C9orf79	9	90502493	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8164623	90502493	50710938	540	78982											
IARS	3376	broad.mit.edu	37	chr9	95007245	95007245	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacagaaaaatacctgaGcatctgagtgtgcttcaaat	9	7	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95007245	A	A	95007245	3	1	71	1	0	0	0	0	1	0	0	0	7543	971	34	4	920	4	IARS	9	95007245	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4504752	95007245	46206186	541	78983											
KIAA1529	57653	broad.mit.edu	37	chr9	100056399	100056399	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggagcagacatgggtaagtGaccagcacccacctggccac	13	13	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100056399	T	T	100056399	1	4	71	0	1	0	0	0	0	0	0	0	8310	1305	45	3		3	KIAA1529	9	100056399	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5049154	100056399	41157032	542	78984											
KIAA1529	57653	broad.mit.edu	37	chr9	100133167	100133167	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttggtatcttgcccaaagCaggcatgatcgtggttgggt	13	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100133167	T	T	100133167	1	4	71	0	1	0	0	0	0	0	0	0	8310	725	25	4		4	KIAA1529	9	100133167	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	76768	100133167	41080264	543	78985											
KIAA1529	57653	broad.mit.edu	37	chr9	100136836	100136836	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctctagggatggagcccCccaaacagaaattatcaatg	9	11	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100136836	T	T	100136836	3	4	71	1	0	0	0	0	1	0	0	0	8310	623	22	4	4721	4	KIAA1529	9	100136836	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3669	100136836	41076595	544	78986											
COL15A1	1306	broad.mit.edu	37	chr9	101767203	101767203	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagataatgaagagcgtttAgcagcaacagcagcagggga	13	8	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101767203	T	T	101767203	3	4	71	1	0	0	0	0	1	0	0	0	3704	417	15	5	1258	5	COL15A1	9	101767203	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1630367	101767203	39446228	545	78987											
COL15A1	1306	broad.mit.edu	37	chr9	101804358	101804358	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaaaaggtgacactggttTacctggctttccaggactaa	9	10	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101804358	A	A	101804358	4	1	71	1	0	0	0	0	0	1	0	0	3704	1764	61	5	2637	5	COL15A1	9	101804358	Nonsense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	37155	101804358	39409073	546	78988											
STX17	55014	broad.mit.edu	37	chr9	102691003	102691003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggatttttgtggtaatGggaaataaccctttagtgat	13	3	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102691003	T	T	102691003	1	4	71	0	1	0	0	0	0	0	0	0	15458	1363	47	2		2	STX17	9	102691003	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	886645	102691003	38522428	547	78989											
IKBKAP	8518	broad.mit.edu	37	chr9	111674800	111674800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaaatgaaaagaaggcCgttagaggctgggaagcaga	16	4	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111674800	A	A	111674800	1	1	71	0	1	0	0	0	0	0	0	0	7680	667	23	1		1	IKBKAP	9	111674800	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	8983797	111674800	29538631	548	78990											
ZFP37	7539	broad.mit.edu	37	chr9	115806359	115806359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtttcaaaatttttccaCatgactcaaatttaagaagc	4	8	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115806359	A	A	115806359	3	1	71	1	0	0	0	0	1	0	0	0	17774	478	17	3	1357	3	ZFP37	9	115806359	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4131559	115806359	25407072	549	78991											
ZNF618	114991	broad.mit.edu	37	chr9	116731397	116731397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgggtttcttttgcagGctgacggagccagtgcagcc	14	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116731397	T	T	116731397	3	4	71	1	0	0	0	0	1	0	0	0	18169	1217	42	3	40	3	ZNF618	9	116731397	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	925038	116731397	24482034	550	78992											
ORM1	5004	broad.mit.edu	37	chr9	117089991	117089991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgctcacctgggagaCccagaagaaggagacaacac	13	11	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117089991	A	A	117089991	1	1	71	0	1	0	0	0	0	0	0	0	11361	522	18	3		3	ORM1	9	117089991	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	358594	117089991	24123440	551	78993											
PAPPA	5069	broad.mit.edu	37	chr9	118982132	118982132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacttgggtgctgactcttGggccgccaggagccgtcatt	14	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118982132	T	T	118982132	1	4	71	0	1	0	0	0	0	0	0	0	11526	1363	47	2		2	PAPPA	9	118982132	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1892141	118982132	22231299	552	78994											
ASTN2	23245	broad.mit.edu	37	chr9	119722275	119722275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatggggccataagtcatGtctgctggtgctgcacagag	15	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119722275	T	T	119722275	1	4	71	0	1	0	0	0	0	0	0	0	1069	1392	48	3		3	ASTN2	9	119722275	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	740143	119722275	21491156	553	78995											
ASTN2	23245	broad.mit.edu	37	chr9	119976578	119976578	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaactgcccagcttctgcaCctcttcccatcttttcaaaa	3	17	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119976578	T	T	119976578	1	4	71	0	1	0	0	0	0	0	0	0	1069	522	18	4		4	ASTN2	9	119976578	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	254303	119976578	21236853	554	78996											
ENG	2022	broad.mit.edu	37	chr9	130587196	130587196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgaggtgtgtctgggaGcttgaagccacgaatgtttt	14	7	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130587196	T	T	130587196	3	4	71	1	0	0	0	0	1	0	0	0	5159	971	34	3	1164	3	ENG	9	130587196	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	10610618	130587196	10626235	555	78997											
SPTAN1	6709	broad.mit.edu	37	chr9	131374332	131374332	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttctcaaattgagctttagGagagggacgattcttcatag	11	6	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131374332	T	T	131374332	1	4	71	0	1	0	0	0	0	0	0	0	15235	1189	41	3		3	SPTAN1	9	131374332	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	787136	131374332	9839099	556	78998											
NUP214	8021	broad.mit.edu	37	chr9	134073366	134073366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcagaagcacagaagaGgccacttcatcagctttgcc	11	12	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134073366	T	T	134073366	3	4	71	1	0	0	0	0	1	0	0	0	10857	991	35	2	4599	2	NUP214	9	134073366	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2699034	134073366	7140065	557	78999											
VAV2	7410	broad.mit.edu	37	chr9	136637201	136637201	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggccccggcggtcaccgcGtgagggccacacggccccgg	16	18	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136637201	A	A	136637201	1	1	71	0	1	0	0	0	0	0	0	0	17259	1160	40	4		4	VAV2	9	136637201	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2563835	136637201	4576230	558	79000											
RXRA	6256	broad.mit.edu	37	chr9	137328357	137328357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggctctgcgctccatcgGgctcaaatgcctggaacatc	11	15	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137328357	T	T	137328357	3	4	71	1	0	0	0	0	1	0	0	0	13874	1232	43	2	1324	2	RXRA	9	137328357	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	691156	137328357	3885074	559	79001											
COL5A1	1289	broad.mit.edu	37	chr9	137622275	137622275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacagacccaggcgctgGggccgaaattcccaccagca	11	17	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137622275	T	T	137622275	3	4	71	1	0	0	0	0	1	0	0	0	3728	1232	43	2	1144	2	COL5A1	9	137622275	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	293918	137622275	3591156	560	79002											
LCN1	3933	broad.mit.edu	37	chr9	138417048	138417048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgagaaaatccagttctGgggctcagtggtgcttccag	12	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138417048	T	T	138417048	1	4	71	0	1	0	0	0	0	0	0	0	8752	1363	47	2		2	LCN1	9	138417048	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	794773	138417048	2796383	561	79003											
TUBB8	347688	broad.mit.edu	37	chr10	94670	94670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgtacctgccacctgcGtggggcgggagggcatgagc	18	12	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94670	T	T	94670	1	4	71	0	1	0	0	0	0	0	0	0	16887	1160	40	3		3	TUBB8	10	94670	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08		94670	135440077	562	79004											
ZMYND11	10771	broad.mit.edu	37	chr10	226021	226021	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catctttgggcagccattgaGattatacggaaccagaagca	10	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226021	T	T	226021	3	4	71	1	0	0	0	0	1	0	0	0	17832	933	33	3	71	3	ZMYND11	10	226021	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	131351	226021	135308726	563	79005											
IDI2	91734	broad.mit.edu	37	chr10	1070682	1070682	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atagctgctggctgtgacccGacctgaaatagatgcacaca	10	11	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1070682	A	A	1070682	1	1	71	0	1	0	0	0	0	0	0	0	7570	1073	37	4		4	IDI2	10	1070682	5'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	844661	1070682	134464065	564	79006											
SFMBT2	57713	broad.mit.edu	37	chr10	7212789	7212789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgagcagcgccgaagaaCcccctcgcaggtgtcacgag	13	15	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7212789	A	A	7212789	1	1	71	0	1	0	0	0	0	0	0	0	14271	522	18	3		3	SFMBT2	10	7212789	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6142107	7212789	128321958	565	79007											
USP6NL	9712	broad.mit.edu	37	chr10	11505366	11505366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccgcacctcggcaggacCtgggacggtaactgcgagcg	14	15	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11505366	A	A	11505366	3	1	71	1	0	0	0	0	1	0	0	0	17214	681	24	2	929	2	USP6NL	10	11505366	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4292577	11505366	124029381	566	79008											
ECHDC3	79746	broad.mit.edu	37	chr10	11797576	11797576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttctgttctacccctgGggttgccttggcaagagcag	12	12	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11797576	T	T	11797576	3	4	71	1	0	0	0	0	1	0	0	0	4935	1232	43	2	574	2	ECHDC3	10	11797576	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	292210	11797576	123737171	567	79009											
UPF2	26019	broad.mit.edu	37	chr10	11971905	11971905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctgcattaggtgctccCttcggatgttggtagcgagg	14	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11971905	A	A	11971905	3	1	71	1	0	0	0	0	1	0	0	0	17130	680	24	2	58	2	UPF2	10	11971905	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	174329	11971905	123562842	568	79010											
SEC61A2	55176	broad.mit.edu	37	chr10	12203072	12203077	+	In_Frame_Del	DEL	ATTCTT	-	-													ttcatgttggggtcatgtgcAttcttctctaagacatggat							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12203077	-	-	12203072	7	5	71	1	0	1	0	1	0	0	0	0	14114	204	8	0	1157	0	SEC61A2	10	12203072	In_Frame_Del	DEL	ATTCTT	TCGA-17-Z042-01A-01W-0746-08	231167	12203072	123331675	569	79011											
FAM171A1	221061	broad.mit.edu	37	chr10	15255757	15255757	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagcctgtagtctttctatCtcaagctgctgatcagccgg	9	12	5	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15255757	A	A	15255757	3	1	71	1	0	0	0	0	1	0	0	0	5535	912	32	3	846	3	FAM171A1	10	15255757	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3052685	15255757	120278990	570	79012											
ITGA8	8516	broad.mit.edu	37	chr10	15714633	15714633	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtcttaccaaggtaactGtcatcataggaagctggagc	12	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15714633	A	A	15714633	2	1	71	1	0	0	0	0	0	0	0	1	7952	1368	48	4		4	ITGA8	10	15714633	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	458876	15714633	119820114	571	79013											
CUBN	8029	broad.mit.edu	37	chr10	17024634	17024634	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatctctccactgggagccTggaaaatcccaccacaacct	7	15	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17024634	A	A	17024634	3	1	71	1	0	0	0	0	1	0	0	0	4084	1580	55	5	6475	5	CUBN	10	17024634	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1310001	17024634	118510113	572	79014											
NEBL	10529	broad.mit.edu	37	chr10	21147170	21147170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctagatgaaccacttacgCcgctgagcattttgctggct	10	12	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21147170	A	A	21147170	3	1	71	1	0	0	0	0	1	0	0	0	10398	753	26	3	2222	3	NEBL	10	21147170	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4122536	21147170	114387577	573	79015											
MLLT10	8028	broad.mit.edu	37	chr10	21959419	21959419	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactctatatctggatcattGaagcgcttggaagatactac	8	8	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21959419	A	A	21959419	2	1	71	1	0	0	0	0	0	0	0	1	9719	1281	45	4		4	MLLT10	10	21959419	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	812249	21959419	113575328	574	79016											
ENKUR	219670	broad.mit.edu	37	chr10	25279523	25279523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcttacatatgtattcagGtgtgacaccataatcctaaa	6	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25279523	T	T	25279523	3	4	71	1	0	0	0	0	1	0	0	0	5162	1261	44	3	319	3	ENKUR	10	25279523	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3320104	25279523	110255224	575	79017											
MYO3A	53904	broad.mit.edu	37	chr10	26457608	26457609	+	Intron	INS	-	A	A													ctgcttcacatctgtgtgccINSatggttctttgtattatatt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26457609	A	A	26457608	6	5	71	0	1	1	1	0	0	0	0	0	10170	609	21	0		0	MYO3A	10	26457608	Intron	INS	-	TCGA-17-Z042-01A-01W-0746-08	1178085	26457608	109077139	576	79018											
GAD2	2572	broad.mit.edu	37	chr10	26507949	26507950	+	Intron	DNP	GG	TT	TT													tcaaagtaaaattaaaatgtGgcattttaatttcattcttt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26507950	TT	TT	26507949	1	4	71	0	1	0	0	0	0	0	0	0	6240	1363	47	2		2	GAD2	10	26507949	Intron	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	50341	26507949	109026798	577	79019											
ZNF438	220929	broad.mit.edu	37	chr10	31134132	31134132	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccttggcttgttggttcCtgactggggtccttcatttt	10	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31134132	A	A	31134132	4	1	71	1	0	0	0	0	0	1	0	0	18037	690	24	2	245	2	ZNF438	10	31134132	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4626183	31134132	104400615	578	79020											
FXYD4	53828	broad.mit.edu	37	chr10	43871199	43871199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgagcctgaccctatGgtgccctcctccttcggggc	12	15	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43871199	T	T	43871199	1	4	71	0	1	0	0	0	0	0	0	0	6180	1363	47	2		2	FXYD4	10	43871199	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	12737067	43871199	91663548	579	79021											
MARCH8	220972	broad.mit.edu	37	chr10	45958759	45958759	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgtcctcaaagacatcgtCgtctcccatctcgtcagagc	8	15	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45958759	A	A	45958759	1	1	71	0	1	0	0	0	0	0	0	0	9399	899	31	3		3	MARCH8	10	45958759	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2087560	45958759	89575988	580	79022											
ANXA8	653145	broad.mit.edu	37	chr10	47059019	47059019	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatacacacacccccacacaAacacacaaccacacatatca	0	18	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47059019	C	C	47059019	1	2	71	0	1	0	0	0	0	0	0	0	724	29	1	5		5	ANXA8	10	47059019	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1100260	47059019	88475728	581	79023											
C10orf128	170371	broad.mit.edu	37	chr10	50373943	50373943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttggtcctctcactcacGgttgccctcgagagacccgg	10	16	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50373943	T	T	50373943	1	4	71	0	1	0	0	0	0	0	0	0	1603	1131	39	1		1	C10orf128	10	50373943	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3314924	50373943	85160804	582	79024											
CHAT	1103	broad.mit.edu	37	chr10	50859935	50859935	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcttcctcagaatagTaaagaaccttgacttcattg	5	9	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50859935	A	A	50859935	3	1	71	1	0	0	0	0	1	0	0	0	3344	1638	57	5	1603	5	CHAT	10	50859935	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	485992	50859935	84674812	583	79025											
PARG	8505	broad.mit.edu	37	chr10	51130443	51130443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaatgagctcccaccggCtccccgcagttcgctcacca	8	18	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51130443	A	A	51130443	3	1	71	1	0	0	0	0	1	0	0	0	11542	797	28	3	1381	3	PARG	10	51130443	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	270508	51130443	84404304	584	79026											
ZWINT	11130	broad.mit.edu	37	chr10	58119990	58119990	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgccagtgctgccctgtatCtcagtaagaggagccaggac	12	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58119990	G	G	58119990	1	3	71	0	1	0	0	0	0	0	0	0	18378	928	32	4		4	ZWINT	10	58119990	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6989547	58119990	77414757	585	79027											
BICC1	80114	broad.mit.edu	37	chr10	60461805	60461805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacaagtttttaattgaGtcaatatttctctcaatttt	3	5	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60461805	T	T	60461805	1	4	71	0	1	0	0	0	0	0	0	0	1433	1044	36	3		3	BICC1	10	60461805	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2341815	60461805	75072942	586	79028											
EGR2	1959	broad.mit.edu	37	chr10	64573954	64573954	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatggtgcacacacccagGggtcctgtggccagtgggtt	15	11	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64573954	A	A	64573954	2	1	71	1	0	0	0	0	0	0	0	1	5012	1219	43	4		4	EGR2	10	64573954	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4112149	64573954	70960793	587	79029											
CTNNA3	29119	broad.mit.edu	37	chr10	67680438	67680438	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgttaattattgccaagCgtgggcatggtggcatgtgc	13	6	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67680438	T	T	67680438	1	4	71	0	1	0	0	0	0	0	0	0	4048	783	27	4		4	CTNNA3	10	67680438	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3106484	67680438	67854309	588	79030											
SGPL1	8879	broad.mit.edu	37	chr10	72576471	72576471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgagccttcaaaggagGgagagaaccataacttggct	11	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72576471	T	T	72576471	1	4	71	0	1	0	0	0	0	0	0	0	14331	1247	43	2		2	SGPL1	10	72576471	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4896033	72576471	62958276	589	79031											
NDST2	8509	broad.mit.edu	37	chr10	75567205	75567205	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatgtcatcgatgtctacCaagatgtagcggtcaaggtc	11	8	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75567205	T	T	75567205	2	4	71	1	0	0	0	0	0	0	0	1	10351	593	21	4		4	NDST2	10	75567205	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2990734	75567205	59967542	590	79032											
IDE	3416	broad.mit.edu	37	chr10	94246967	94246967	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattaccttaataagagcagGgtatggtgtcgcctcttttt	9	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94246967	A	A	94246967	3	1	71	1	0	0	0	0	1	0	0	0	7563	1232	43	4	1469	4	IDE	10	94246967	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	18679762	94246967	41287780	591	79033											
DNTT	1791	broad.mit.edu	37	chr10	98087395	98087395	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcctcctctgcccgaaTacttcagtggctccctgact	7	16	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98087395	C	C	98087395	1	2	71	0	1	0	0	0	0	0	0	0	4720	1421	49	5		5	DNTT	10	98087395	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	3840428	98087395	37447352	592	79034											
TLL2	7093	broad.mit.edu	37	chr10	98144565	98144565	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcttcccagagtccctgtCcccaccccagacccccagca	7	21	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98144565	A	A	98144565	1	1	71	0	1	0	0	0	0	0	0	0	16069	870	30	3		3	TLL2	10	98144565	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	57170	98144565	37390182	593	79035											
TLL2	7093	broad.mit.edu	37	chr10	98188363	98188363	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccgactgattctgcagaGgtggcctcgctttcgtttac	10	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98188363	A	A	98188363	1	1	71	0	1	0	0	0	0	0	0	0	16069	1015	35	4		4	TLL2	10	98188363	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	43798	98188363	37346384	594	79036											
PIK3AP1	118788	broad.mit.edu	37	chr10	98469658	98469658	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggacctgccgactggaCaggaacagggtctgcaggta	15	11	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98469658	A	A	98469658	2	1	71	1	0	0	0	0	0	0	0	1	12003	465	17	3		3	PIK3AP1	10	98469658	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	281295	98469658	37065089	595	79037											
CUTC	51076	broad.mit.edu	37	chr10	101514311	101514311	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtataacagacagaaatctAcaaaggatccttgagggttc	10	7	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101514311	T	T	101514311	2	4	71	1	0	0	0	0	0	0	0	1	4096	378	14	5		5	CUTC	10	101514311	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	3044653	101514311	34020436	596	79038											
SLK	9748	broad.mit.edu	37	chr10	105767963	105767963	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgacaatatgaccaggaaaTtgagaatctagaaaaacagc	9	7	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105767963	G	G	105767963	3	3	71	1	0	0	0	0	1	0	0	0	14862	1493	52	5	2679	5	SLK	10	105767963	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4253652	105767963	29766784	597	79039											
SORCS3	22986	broad.mit.edu	37	chr10	106562360	106562360	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaagatactcagtttcAccactgtgtggttcaagagt	11	7	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106562360	T	T	106562360	1	4	71	0	1	0	0	0	0	0	0	0	15046	174	6	5		5	SORCS3	10	106562360	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	794397	106562360	28972387	598	79040											
SORCS3	22986	broad.mit.edu	37	chr10	106865402	106865402	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acactgtccctcctttgcttCagggacccagtcctctgggg	10	15	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106865402	A	A	106865402	1	1	71	0	1	0	0	0	0	0	0	0	15046	841	29	3		3	SORCS3	10	106865402	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	303042	106865402	28669345	599	79041											
SORCS1	114815	broad.mit.edu	37	chr10	108431188	108431188	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggactttctctgctccacatGagtgacatttagggagacat	10	9	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108431188	T	T	108431188	1	4	71	0	1	0	0	0	0	0	0	0	15044	1305	45	3		3	SORCS1	10	108431188	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1565786	108431188	27103559	600	79042											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118200839	118200839	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcctttttacactagcatGacaacagatgctcagacccc	5	14	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118200839	T	T	118200839	1	4	71	0	1	0	0	0	0	0	0	0	12247	1305	45	3		3	PNLIPRP3	10	118200839	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9769651	118200839	17333908	601	79043											
KNDC1	85442	broad.mit.edu	37	chr10	135027499	135027499	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctcttctgagtctctttCggccaaaacctgcagcttat	7	13	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135027499	A	A	135027499	4	1	71	1	0	0	0	0	0	1	0	0	8497	893	31	3	4652	3	KNDC1	10	135027499	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	16826660	135027499	507248	602	79044											
SCGB1C1	147199	broad.mit.edu	37	chr11	193923	193923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgctggtatgagggcgGcgggcaccccattttctaaa	13	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193923	T	T	193923	1	4	71	0	1	0	0	0	0	0	0	0	14007	1218	42	3		3	SCGB1C1	11	193923	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08		193923	134812593	603	79045											
OR52A1	23538	broad.mit.edu	37	chr11	5173456	5173456	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctcagatttgatgatgctCagaagcaaggaatttccaat	9	8	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5173456	T	T	5173456	2	4	71	1	0	0	0	0	0	0	0	1	11202	813	29	4		4	OR52A1	11	5173456	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4979533	5173456	129833060	604	79046											
OR56A3	390083	broad.mit.edu	37	chr11	5969402	5969402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagaaagtctcccctgatGtgccagtcttgctcaatgtt	9	10	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5969402	T	T	5969402	3	4	71	1	0	0	0	0	1	0	0	0	11228	1377	48	3	828	3	OR56A3	11	5969402	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	795946	5969402	129037114	605	79047											
OR56B4	196335	broad.mit.edu	37	chr11	6129094	6129094	+	Frame_Shift_Del	DEL	G	-	-													attaccaggcattcatgagtGgcagcactggctctccctgc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6129094	-	-	6129094	7	5	71	1	0	1	0	1	0	0	0	0	11232	1357	47	0	88	0	OR56B4	11	6129094	Frame_Shift_Del	DEL	G	TCGA-17-Z042-01A-01W-0746-08	159692	6129094	128877422	606	79048											
FAM160A2	84067	broad.mit.edu	37	chr11	6235882	6235882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccactgggcctgttccCagcccacccagggtcactcc	9	19	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6235882	A	A	6235882	1	1	71	0	1	0	0	0	0	0	0	0	5515	609	21	2		2	FAM160A2	11	6235882	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	106788	6235882	128770634	607	79049											
DCHS1	8642	broad.mit.edu	37	chr11	6646566	6646566	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacactgctcaaagtccaGgggccccgtgagggagacac	13	13	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6646566	A	A	6646566	2	1	71	1	0	0	0	0	0	0	0	1	4320	991	35	4		4	DCHS1	11	6646566	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	410684	6646566	128359950	608	79050											
OR2D2	120776	broad.mit.edu	37	chr11	6913634	6913634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagtgaccaggtagacaCccaataatacgataaatagc	8	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6913634	A	A	6913634	3	1	71	1	0	0	0	0	1	0	0	0	11088	507	18	3	831	3	OR2D2	11	6913634	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	267068	6913634	128092882	609	79051											
MICAL2	9645	broad.mit.edu	37	chr11	12246384	12246384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtgagtctggggcccaGgctggcccctggagacgagg	17	11	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12246384	T	T	12246384	1	4	71	0	1	0	0	0	0	0	0	0	9663	1015	35	2		2	MICAL2	11	12246384	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5332750	12246384	122760132	610	79052											
SOX6	55553	broad.mit.edu	37	chr11	16340026	16340026	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgagtcatttcctcaagcttCttctgtttcagtgtgtccac	7	12	5	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16340026	A	A	16340026	3	1	71	1	0	0	0	0	1	0	0	0	15069	912	32	3	2173	3	SOX6	11	16340026	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4093642	16340026	118666490	611	79053											
SLC6A5	9152	broad.mit.edu	37	chr11	20629090	20629090	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actacaatgtgattatttgcTatacacttttctacctgttt	4	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20629090	C	C	20629090	3	2	71	1	0	0	0	0	1	0	0	0	14801	1522	53	5	895	5	SLC6A5	11	20629090	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4289064	20629090	114377426	612	79054											
NELL1	4745	broad.mit.edu	37	chr11	21115756	21115756	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcagggcagtcaaatcTtaaaattccaaagtgatctc	6	9	5	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21115756	C	C	21115756	1	2	71	0	1	0	0	0	0	0	0	0	10428	1624	56	5		5	NELL1	11	21115756	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	486666	21115756	113890760	613	79055											
PAX6	5080	broad.mit.edu	37	chr11	31822128	31822129	+	Intron	DNP	CC	TT	TT													gccttcaaatgcagtctcacCcatgacattccccaagcatg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31822129	TT	TT	31822128	1	4	71	0	1	0	0	0	0	0	0	0	11577	638	22	4		4	PAX6	11	31822128	Intron	DNP	CC	TCGA-17-Z042-01A-01W-0746-08	10706372	31822128	103184388	614	79056											
NAT10	55226	broad.mit.edu	37	chr11	34160733	34160733	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagttaaacctctgtgttgCccagaatgacctgaccggag	10	12	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34160733	G	G	34160733	1	3	71	0	1	0	0	0	0	0	0	0	10268	754	26	4		4	NAT10	11	34160733	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2338605	34160733	100845783	615	79057											
PRDM11	56981	broad.mit.edu	37	chr11	45245683	45245683	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggatgtgtcaggtgaccTaacaggaggcctgctttgtt	15	7	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45245683	C	C	45245683	1	2	71	0	1	0	0	0	0	0	0	0	12558	1537	53	5		5	PRDM11	11	45245683	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	11084950	45245683	89760833	616	79058											
PRDM11	56981	broad.mit.edu	37	chr11	45246307	45246307	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcgggagctccaggcagaaTtagacatgcttaagtctggg	13	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45246307	A	A	45246307	3	1	71	1	0	0	0	0	1	0	0	0	12558	1490	52	5	1410	5	PRDM11	11	45246307	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	624	45246307	89760209	617	79059											
ZNF408	79797	broad.mit.edu	37	chr11	46722524	46722524	+	Translation_Start_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagaaaaaaatttggaAgtccgtgactgtttcctgga	10	7	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46722524	T	T	46722524	1	4	71	1	0	0	0	0	0	0	0	0	18015	87	3	5		5	ZNF408	11	46722524	Translation_Start_Site	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1476217	46722524	88283992	618	79060											
F2	2147	broad.mit.edu	37	chr11	46742103	46742103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaagtacacaggtgagCaccgggaaggatttgcccca	14	11	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46742103	A	A	46742103	1	1	71	0	1	0	0	0	0	0	0	0	5385	725	25	3		3	F2	11	46742103	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	19579	46742103	88264413	619	79061											
NR1H3	10062	broad.mit.edu	37	chr11	47281993	47281993	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcggaaaaaggggccagCccccaaaatgctggggaacg	14	10	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47281993	T	T	47281993	3	4	71	1	0	0	0	0	1	0	0	0	10713	739	26	4	276	4	NR1H3	11	47281993	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	539890	47281993	87724523	620	79062											
SLC39A13	91252	broad.mit.edu	37	chr11	47397159	47397159	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctgggctgggggatgGgggcgtggcaggccccgtac	21	11	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47397159	T	T	47397159	1	4	71	0	1	0	0	0	0	0	0	0	14730	1247	43	2		2	SLC39A13	11	47397159	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	115166	47397159	87609357	621	79063											
OR4C16	219428	broad.mit.edu	37	chr11	55340087	55340087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttcagatttttcttgccCtgagtttgccattctgtggc	9	9	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55340087	A	A	55340087	3	1	71	1	0	0	0	0	1	0	0	0	11143	680	24	2	486	2	OR4C16	11	55340087	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7942928	55340087	79666429	622	79064											
OR4C16	219428	broad.mit.edu	37	chr11	55340430	55340430	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctgtattttatacagttgGaacatcttttctcaaccctg	6	9	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55340430	C	C	55340430	3	2	71	1	0	0	0	0	1	0	0	0	11143	1174	41	4	829	4	OR4C16	11	55340430	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	343	55340430	79666086	623	79065											
OR4C11	219429	broad.mit.edu	37	chr11	55371098	55371098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtatatatgaatatacatGggccaaagaataagatgact	9	4	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55371098	T	T	55371098	3	4	71	1	0	0	0	0	1	0	0	0	11139	1348	47	2	182	2	OR4C11	11	55371098	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	30668	55371098	79635418	624	79066											
OR5D14	219436	broad.mit.edu	37	chr11	55563784	55563784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacctgacttctatcacCatcttccatgggaccatcct	4	17	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563784	A	A	55563784	2	1	71	1	0	0	0	0	0	0	0	1	11249	581	21	2		2	OR5D14	11	55563784	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	192686	55563784	79442732	625	79067											
OR5L1	219437	broad.mit.edu	37	chr11	55579086	55579086	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacctgggcatgattgcactGattcaggtcagctctcggct	11	11	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55579086	C	C	55579086	2	2	71	1	0	0	0	0	0	0	0	1	11264	1277	45	4		4	OR5L1	11	55579086	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	15302	55579086	79427430	626	79068											
OR5D16	390144	broad.mit.edu	37	chr11	55606690	55606690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtattgtatgcatggggaGtcgcatgttccctgacactc	11	9	0	1	rs143345816		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55606690	T	T	55606690	3	4	71	1	0	0	0	0	1	0	0	0	11250	1029	36	3	465	3	OR5D16	11	55606690	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	27604	55606690	79399826	627	79069											
SPRYD5	84767	broad.mit.edu	37	chr11	55653182	55653182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctctgaggagcaaatatGtgggatgcacagagagacaa	13	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55653182	T	T	55653182	3	4	71	1	0	0	0	0	1	0	0	0	15229	1377	48	3	280	3	SPRYD5	11	55653182	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	46492	55653182	79353334	628	79070											
OR5AS1	219447	broad.mit.edu	37	chr11	55797859	55797860	+	5'Flank	DNP	CT	AG	AG													ttaactcacatctgctgataCtacctaggtccagtgggaaa							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	55797860	AG	AG	55797859	1	1	71	0	1	0	0	0	0	0	0	0	11240	580	20	3		3	OR5AS1	11	55797859	5'Flank	DNP	CT	TCGA-17-Z042-01A-01W-0746-08	144677	55797859	79208657	629	79071											
OR5T2	219464	broad.mit.edu	37	chr11	55999935	55999935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaccagctcgatagagcCcacaaagtagaagagtagaa	11	8	0	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55999935	A	A	55999935	3	1	71	1	0	0	0	0	1	0	0	0	11276	623	22	2	351	2	OR5T2	11	55999935	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	202076	55999935	79006581	630	79072											
OR8J1	219477	broad.mit.edu	37	chr11	56127956	56127956	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaactctactgtcattgcCcctaaaatgctgattaactt	6	10	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56127956	A	A	56127956	2	1	71	1	0	0	0	0	0	0	0	1	11335	610	22	2		2	OR8J1	11	56127956	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	128021	56127956	78878560	631	79073											
TMX2	51075	broad.mit.edu	37	chr11	57505860	57505860	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaaccccccctatatatGggccctgagtatatcaagta	7	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57505860	C	C	57505860	3	2	71	1	0	0	0	0	1	0	0	0	16390	1348	47	4	413	4	TMX2	11	57505860	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1377904	57505860	77500656	632	79074											
GLYAT	10249	broad.mit.edu	37	chr11	58480216	58480216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtgagtcagcacacatcCcattcctcttacttactttg	5	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58480216	A	A	58480216	1	1	71	0	1	0	0	0	0	0	0	0	6543	638	22	2		2	GLYAT	11	58480216	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	974356	58480216	76526300	633	79075											
GIF	2694	broad.mit.edu	37	chr11	59599272	59599272	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcattgtggtttcaaatctAaaaaaaagtttatatatgat	6	3	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59599272	G	G	59599272	1	3	71	0	1	0	0	0	0	0	0	0	6440	377	13	5		5	GIF	11	59599272	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1119056	59599272	75407244	634	79076											
MS4A1	931	broad.mit.edu	37	chr11	60233577	60233577	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaaccagctaatccctctGagaaaaactccccatctacc	5	15	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60233577	T	T	60233577	4	4	71	1	0	0	0	0	0	1	0	0	9948	1291	45	3	534	3	MS4A1	11	60233577	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	634305	60233577	74772939	635	79077											
MS4A1	931	broad.mit.edu	37	chr11	60234637	60234637	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagttgttgaaactaggagcTtgatttaaaaaaaaaaattg	9	2	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60234637	C	C	60234637	1	2	71	0	1	0	0	0	0	0	0	0	9948	1624	56	5		5	MS4A1	11	60234637	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1060	60234637	74771879	636	79078											
C11orf9	745	broad.mit.edu	37	chr11	61544844	61544844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcatcaacacagaccggCcggatgaggcgctggttgtg	16	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61544844	A	A	61544844	3	1	71	1	0	0	0	0	1	0	0	0	1683	739	26	3	1768	3	C11orf9	11	61544844	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1310207	61544844	73461672	637	79079											
AHNAK	79026	broad.mit.edu	37	chr11	62287506	62287506	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccacatctggaccttctcCtttgaagccaggcatgctga	8	13	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62287506	T	T	62287506	3	4	71	1	0	0	0	0	1	0	0	0	414	690	24	4	3409	4	AHNAK	11	62287506	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	742662	62287506	72719010	638	79080											
ZBTB3	79842	broad.mit.edu	37	chr11	62520433	62520433	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaactgctgagatgccagaaGagaagtagtttgtaggaatg	13	4	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62520433	T	T	62520433	3	4	71	1	0	0	0	0	1	0	0	0	17660	942	33	3	874	3	ZBTB3	11	62520433	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	232927	62520433	72486083	639	79081											
STIP1	10963	broad.mit.edu	37	chr11	63970784	63970784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtccctgatttcttccCtgtcacctccatttctctct	3	16	5	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63970784	T	T	63970784	1	4	71	0	1	0	0	0	0	0	0	0	15403	696	24	4		4	STIP1	11	63970784	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1450351	63970784	71035732	640	79082											
NPAS4	266743	broad.mit.edu	37	chr11	66192520	66192520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcatggatctctctacccCagatcccagtgaggaatggg	10	12	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66192520	T	T	66192520	3	4	71	1	0	0	0	0	1	0	0	0	10660	594	21	4	2185	4	NPAS4	11	66192520	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2221736	66192520	68813996	641	79083											
ODZ4	26011	broad.mit.edu	37	chr11	78380201	78380201	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtagcctatgatgatctGaaagttggggttggtatcca	13	5	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78380201	C	C	78380201	3	2	71	1	0	0	0	0	1	0	0	0	10932	1299	45	4	1132	4	ODZ4	11	78380201	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	12187681	78380201	56626315	642	79084											
RAB30	27314	broad.mit.edu	37	chr11	82698677	82698677	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatattgttctatctcccGcagccactcaggaaggcaac	9	13	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82698677	A	A	82698677	3	1	71	1	0	0	0	0	1	0	0	0	13027	1086	38	4	306	4	RAB30	11	82698677	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4318476	82698677	52307839	643	79085											
NAALAD2	10003	broad.mit.edu	37	chr11	89882099	89882099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttaatctgaagtatataCttggaggcaaaatgaattat	8	4	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89882099	A	A	89882099	1	1	71	0	1	0	0	0	0	0	0	0	10222	580	20	3		3	NAALAD2	11	89882099	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7183422	89882099	45124417	644	79086											
FAT3	120114	broad.mit.edu	37	chr11	92577580	92577580	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtcctcacccagaagcagGacagcctgcgcatcatcagc	9	16	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92577580	A	A	92577580	3	1	71	1	0	0	0	0	1	0	0	0	5748	1174	41	4	11117	4	FAT3	11	92577580	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2695481	92577580	42428936	645	79087											
MTNR1B	4544	broad.mit.edu	37	chr11	92700501	92700501	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttccaccagcaacccactAcccataatcaccctcagagc	3	20	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92700501	T	T	92700501	1	4	71	0	1	0	0	0	0	0	0	0	10046	406	14	5		5	MTNR1B	11	92700501	5'Flank	SNP	A	TCGA-17-Z042-01A-01W-0746-08	122921	92700501	42306015	646	79088											
HEPHL1	341208	broad.mit.edu	37	chr11	93806163	93806163	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggatatgttgagaagtgtCctcaatcacattcctatgtc	9	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93806163	T	T	93806163	1	4	71	0	1	0	0	0	0	0	0	0	7122	870	30	4		4	HEPHL1	11	93806163	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1105662	93806163	41200353	647	79089											
HEPHL1	341208	broad.mit.edu	37	chr11	93839337	93839337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggaaagacgtttttgaaCtaacaaattcaatgtatttc	7	5	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93839337	A	A	93839337	1	1	71	0	1	0	0	0	0	0	0	0	7122	580	20	3		3	HEPHL1	11	93839337	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	33174	93839337	41167179	648	79090											
FOLR4	390243	broad.mit.edu	37	chr11	94040590	94040590	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctccatcccctgcagGgaagaaccgctgccccaaag	8	19	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94040590	A	A	94040590	3	1	71	1	0	0	0	0	1	0	0	0	6042	1246	43	4	478	4	FOLR4	11	94040590	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	201253	94040590	40965926	649	79091											
FUT4	2526	broad.mit.edu	37	chr11	94278601	94278601	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaacgcgttgctcgctggGgcggtgccggtggtgctggg	20	11	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94278601	A	A	94278601	2	1	71	1	0	0	0	0	0	0	0	1	6166	1219	43	4		4	FUT4	11	94278601	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	238011	94278601	40727915	650	79092											
CWC15	51503	broad.mit.edu	37	chr11	94704361	94704361	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactcacatccacagtgcctGggcaaataagcctttggtaa	8	11	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94704361	A	A	94704361	1	1	71	0	1	0	0	0	0	0	0	0	4100	1363	47	4		4	CWC15	11	94704361	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	425760	94704361	40302155	651	79093											
CNTN5	53942	broad.mit.edu	37	chr11	100095485	100095485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcatgctgggagatatgGctgcagggtacagaccacag	15	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100095485	T	T	100095485	3	4	71	1	0	0	0	0	1	0	0	0	3676	1203	42	3	2000	3	CNTN5	11	100095485	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5391124	100095485	34911031	652	79094											
MMP8	4317	broad.mit.edu	37	chr11	102586904	102586904	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggtgccccagaacctatAaaaaattccgatgagaagca	9	9	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102586904	G	G	102586904	1	3	71	0	1	0	0	0	0	0	0	0	9762	377	13	5		5	MMP8	11	102586904	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2491419	102586904	32419612	653	79095											
MMP13	4322	broad.mit.edu	37	chr11	102819851	102819851	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttcgttaaaaacagctcCgcatcaacctgctgaggatg	9	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102819851	A	A	102819851	2	1	71	1	0	0	0	0	0	0	0	1	9745	639	23	1		1	MMP13	11	102819851	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	232947	102819851	32186665	654	79096											
DYNC2H1	79659	broad.mit.edu	37	chr11	103018511	103018511	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catttttcagtgctgtcaagGtagattgtttaaatattaat	7	4	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103018511	C	C	103018511	3	2	71	1	0	0	0	0	1	0	0	0	4886	1261	44	4	2787	4	DYNC2H1	11	103018511	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	198660	103018511	31988005	655	79097											
GUCY1A2	2977	broad.mit.edu	37	chr11	106558195	106558195	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagcaatgaaagagacAcaatctctttccacccccca	4	14	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106558195	G	G	106558195	1	3	71	0	1	0	0	0	0	0	0	0	6958	174	6	5		5	GUCY1A2	11	106558195	3'UTR	SNP	A	TCGA-17-Z042-01A-01W-0746-08	3539684	106558195	28448321	656	79098											
CWF19L2	143884	broad.mit.edu	37	chr11	107263483	107263483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaattctgaattaataaaCaaagacatatgttaaacata	5	4	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107263483	A	A	107263483	1	1	71	0	1	0	0	0	0	0	0	0	4105	493	17	3		3	CWF19L2	11	107263483	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	705288	107263483	27743033	657	79099											
ELMOD1	55531	broad.mit.edu	37	chr11	107506376	107506376	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctaggctgggaatctctcTtcaggcttgccttctgcaaa	9	13	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107506376	A	A	107506376	3	1	71	1	0	0	0	0	1	0	0	0	5110	1609	56	5	323	5	ELMOD1	11	107506376	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	242893	107506376	27500140	658	79100											
EXPH5	23086	broad.mit.edu	37	chr11	108464276	108464276	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtcattttctttactgtGtgtgagttacacttaagctc	7	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108464276	A	A	108464276	1	1	71	0	1	0	0	0	0	0	0	0	5365	1392	48	4		4	EXPH5	11	108464276	5'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	957900	108464276	26542240	659	79101											
TRIM29	23650	broad.mit.edu	37	chr11	120008093	120008093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctcaaagtcccggatgGgctcgagcagctggtggtct	16	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120008093	T	T	120008093	3	4	71	1	0	0	0	0	1	0	0	0	16627	1232	43	2	1155	2	TRIM29	11	120008093	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	11543817	120008093	14998423	660	79102											
SORL1	6653	broad.mit.edu	37	chr11	121495780	121495780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttcctgagcaatctcttGtgtttgttttcagggctatg	10	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121495780	T	T	121495780	1	4	71	0	1	0	0	0	0	0	0	0	15048	1392	48	3		3	SORL1	11	121495780	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1487687	121495780	13510736	661	79103											
ASAM	79827	broad.mit.edu	37	chr11	122954456	122954456	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattcgctgccagtaatacAcaatgggctctgtgccagag	12	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122954456	T	T	122954456	3	4	71	1	0	0	0	0	1	0	0	0	1013	159	6	5	649	5	ASAM	11	122954456	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1458676	122954456	12052060	662	79104											
CCDC15	80071	broad.mit.edu	37	chr11	124857980	124857980	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgttctctccaacgacCagaatattctacccaaatgt	5	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124857980	G	G	124857980	3	3	71	1	0	0	0	0	1	0	0	0	2810	595	21	4	1884	4	CCDC15	11	124857980	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1903524	124857980	10148536	663	79105											
PKNOX2	63876	broad.mit.edu	37	chr11	125255525	125255525	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgagtgcatcacctcCgccagctttgatgtggacat	11	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125255525	T	T	125255525	2	4	71	1	0	0	0	0	0	0	0	1	12078	639	23	4		4	PKNOX2	11	125255525	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	397545	125255525	9750991	664	79106											
CACNA2D4	93589	broad.mit.edu	37	chr12	2024090	2024090	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgccgaaggtgtcagccCatagcttcactctgccaggc	10	17	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2024090	T	T	2024090	4	4	71	1	0	0	0	0	0	1	0	0	2577	595	21	4	3322	4	CACNA2D4	12	2024090	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08		2024090	131827805	665	79107											
PRMT8	56341	broad.mit.edu	37	chr12	3677720	3677720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagttttcaattatgttggtAtaaactagtttggtaaaggg	10	2	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3677720	T	T	3677720	1	4	71	0	1	0	0	0	0	0	0	0	12648	464	16	5		5	PRMT8	12	3677720	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1653630	3677720	130174175	666	79108											
GALNT8	26290	broad.mit.edu	37	chr12	4881555	4881555	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggagagcagggctagaagaGatgatgaattactgaggcat	16	4	0	6			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4881555	C	C	4881555	1	2	71	0	1	0	0	0	0	0	0	0	6281	957	33	4		4	GALNT8	12	4881555	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1203835	4881555	128970340	667	79109											
CD27	939	broad.mit.edu	37	chr12	6554539	6554540	+	Intron	DNP	GG	AA	AA													ggaggcaccaccttgaagagGgcagagaaccagcccttctc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6554540	AA	AA	6554539	1	1	71	0	1	0	0	0	0	0	0	0	3020	1247	43	4		4	CD27	12	6554539	Intron	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	1672984	6554539	127297356	668	79110											
CHD4	1108	broad.mit.edu	37	chr12	6702114	6702114	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctttttaaaggcctggcCaccaagggctgtcacataca	8	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6702114	T	T	6702114	1	4	71	0	1	0	0	0	0	0	0	0	3358	609	21	4		4	CHD4	12	6702114	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	147575	6702114	127149781	669	79111											
ZNF384	171017	broad.mit.edu	37	chr12	6788225	6788225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgtgtccatactgatgCctgagggcagggacactgag	13	10	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6788225	A	A	6788225	3	1	71	1	0	0	0	0	1	0	0	0	18001	739	26	3	1574	3	ZNF384	12	6788225	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	86111	6788225	127063670	670	79112											
LRRC23	10233	broad.mit.edu	37	chr12	7016370	7016370	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagctggccttcctcagtAtctaccctgctttgcgaatg	10	12	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7016370	G	G	7016370	1	3	71	0	1	0	0	0	0	0	0	0	9065	464	16	5		5	LRRC23	12	7016370	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	228145	7016370	126835525	671	79113											
A2M	2	broad.mit.edu	37	chr12	9264982	9264982	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcatacctgtctgccCtggtttgtagattgatttgt	8	9	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9264982	T	T	9264982	3	4	71	1	0	0	0	0	1	0	0	0	4	681	24	4	4139	4	A2M	12	9264982	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2248612	9264982	124586913	672	79114											
PZP	5858	broad.mit.edu	37	chr12	9349784	9349784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttccactaccactcctcCacagaactgtccctctttag	3	16	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9349784	A	A	9349784	1	1	71	0	1	0	0	0	0	0	0	0	12977	609	21	2		2	PZP	12	9349784	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	84802	9349784	124502111	673	79115											
CLEC12B	387837	broad.mit.edu	37	chr12	10161709	10161709	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaacggaacatggaggGgacagtaaggaaataaaagc	13	5	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10161709	T	T	10161709	1	4	71	0	1	0	0	0	0	0	0	0	3530	1247	43	2		2	CLEC12B	12	10161709	5'Flank	SNP	G	TCGA-17-Z042-01A-01W-0746-08	811925	10161709	123690186	674	79116											
CLEC9A	283420	broad.mit.edu	37	chr12	10218182	10218182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcgtctaactgcagcaCgtggaagtattttatctgtg	9	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10218182	A	A	10218182	3	1	71	1	0	0	0	0	1	0	0	0	3554	536	19	3	699	3	CLEC9A	12	10218182	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	56473	10218182	123633713	675	79117											
GRIN2B	2904	broad.mit.edu	37	chr12	14018831	14018831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgggcgatggcttcctgGtctgtgtcatcagcaaacac	11	11	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14018831	T	T	14018831	3	4	71	1	0	0	0	0	1	0	0	0	6846	1252	44	3	4190	3	GRIN2B	12	14018831	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3800649	14018831	119833064	676	79118											
LST-3TM12	338821	broad.mit.edu	37	chr12	21172210	21172211	+	Missense_Mutation	DNP	TT	AA	AA													tttgtgattgtatttgtaagTtactttggatctaaactaca							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21172211	AA	AA	21172210	3	1	71	1	0	0	0	0	1	0	0	0	9153	1722	60	5	120	5	LST-3TM12	12	21172210	Missense_Mutation	DNP	TT	TCGA-17-Z042-01A-01W-0746-08	7153379	21172210	112679685	677	79119											
ST8SIA1	6489	broad.mit.edu	37	chr12	22439579	22439579	+	Intron	DEL	C	-	-													taagcaaagcttgatttagaCcacttcaaaagtggtcaagt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22439579	-	-	22439579	6	5	71	0	1	1	0	1	0	0	0	0	15349	522	18	0		0	ST8SIA1	12	22439579	Intron	DEL	C	TCGA-17-Z042-01A-01W-0746-08	1267369	22439579	111412316	678	79120											
LRMP	4033	broad.mit.edu	37	chr12	25257420	25257420	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaagctcagtgtgtttaTtaacctgacatgaactgggg	13	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25257420	C	C	25257420	1	2	71	0	1	0	0	0	0	0	0	0	9037	1508	52	5		5	LRMP	12	25257420	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2817841	25257420	108594475	679	79121											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	71	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	140865	25398285	108453610	680	79122											
PTHLH	5744	broad.mit.edu	37	chr12	28116330	28116330	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcagacaggtggtcccCttctagcccactcccagtca	10	15	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28116330	T	T	28116330	3	4	71	1	0	0	0	0	1	0	0	0	12867	681	24	4	70	4	PTHLH	12	28116330	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2718045	28116330	105735565	681	79123											
OVCH1	341350	broad.mit.edu	37	chr12	29614890	29614890	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtgtgttcacagacctctCtttctaacacatgcacttga	6	11	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29614890	A	A	29614890	3	1	71	1	0	0	0	0	1	0	0	0	11417	913	32	3	1267	3	OVCH1	12	29614890	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1498560	29614890	104237005	682	79124											
BICD1	636	broad.mit.edu	37	chr12	32520692	32520692	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtcaggtaaattcagatGtcctttcccttccacccagc	6	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32520692	A	A	32520692	1	1	71	0	1	0	0	0	0	0	0	0	1434	1392	48	4		4	BICD1	12	32520692	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2905802	32520692	101331203	683	79125											
ADAMTS20	80070	broad.mit.edu	37	chr12	43860422	43860422	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaatcttataatcgaatAcatgttcaattatttaacat	2	6	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43860422	G	G	43860422	1	3	71	0	1	0	0	0	0	0	0	0	266	406	14	5		5	ADAMTS20	12	43860422	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	11339730	43860422	89991473	684	79126											
FAM186B	84070	broad.mit.edu	37	chr12	49994658	49994658	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtatttggtctccaggctCctgttctccttgtgttggag	11	10	2	0	rs74086906	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49994658	T	T	49994658	2	4	71	1	0	0	0	0	0	0	0	1	5558	854	30	4		4	FAM186B	12	49994658	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6134236	49994658	83857237	685	79127											
GALNT6	11226	broad.mit.edu	37	chr12	51752879	51752879	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtctgggggccgtacttctCttcatctaaacctctccgag	10	13	5	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51752879	T	T	51752879	1	4	71	0	1	0	0	0	0	0	0	0	6279	928	32	4		4	GALNT6	12	51752879	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1758221	51752879	82099016	686	79128											
KRT6A	3853	broad.mit.edu	37	chr12	52884506	52884506	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgagatgtgggtctgcatCtgggacagctcctgcagaac	13	10	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52884506	A	A	52884506	3	1	71	1	0	0	0	0	1	0	0	0	8551	912	32	3	790	3	KRT6A	12	52884506	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1131627	52884506	80967389	687	79129											
KRT72	140807	broad.mit.edu	37	chr12	52992565	52992565	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctagttccattctgtctgGatgttcctccctcccccggt	7	16	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52992565	C	C	52992565	1	2	71	0	1	0	0	0	0	0	0	0	8556	1189	41	4		4	KRT72	12	52992565	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	108059	52992565	80859330	688	79130											
KRT1	3848	broad.mit.edu	37	chr12	53071142	53071142	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcagctttgctcttctgGgctatatcctcgtactgggc	10	13	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53071142	T	T	53071142	2	4	71	1	0	0	0	0	0	0	0	1	8518	1219	43	2		2	KRT1	12	53071142	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	78577	53071142	80780753	689	79131											
HNRNPA1	3178	broad.mit.edu	37	chr12	54674565	54674565	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgccgccgaagaagcatcGttaaagtctctcttcaccct	8	14	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54674565	A	A	54674565	1	1	71	0	1	0	0	0	0	0	0	0	7324	1160	40	4		4	HNRNPA1	12	54674565	5'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1603423	54674565	79177330	690	79132											
OR6C6	283365	broad.mit.edu	37	chr12	55688318	55688318	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtacaggtggaaaatgctttGttcctttgctgtgcagaaga	12	6	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55688318	C	C	55688318	3	2	71	1	0	0	0	0	1	0	0	0	11288	1368	48	4	247	4	OR6C6	12	55688318	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1013753	55688318	78163577	691	79133											
BAZ2A	11176	broad.mit.edu	37	chr12	57005320	57005320	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagagttgtgcattaaacttGtcaaggtcaataaatgtagc	9	5	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57005320	C	C	57005320	1	2	71	0	1	0	0	0	0	0	0	0	1336	1392	48	4		4	BAZ2A	12	57005320	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1317002	57005320	76846575	692	79134											
TMEM194A	23306	broad.mit.edu	37	chr12	57458497	57458497	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaattcccacagtcatccCagtagagtagtagaaaattt	6	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57458497	T	T	57458497	3	4	71	1	0	0	0	0	1	0	0	0	16239	594	21	4	783	4	TMEM194A	12	57458497	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	453177	57458497	76393398	693	79135											
STAT6	6778	broad.mit.edu	37	chr12	57498342	57498342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacagactcagtgcccttccGctcacaccgcttgatcttct	7	16	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57498342	C	C	57498342	3	2	71	1	0	0	0	0	1	0	0	0	15388	1086	38	4	1474	4	STAT6	12	57498342	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	39845	57498342	76353553	694	79136											
AGAP2	116986	broad.mit.edu	37	chr12	58126272	58126272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagctgttgctgcttgcGcaaggtcaccaccttctggg	12	12	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58126272	T	T	58126272	3	4	71	1	0	0	0	0	1	0	0	0	368	1087	38	3	1922	3	AGAP2	12	58126272	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	627930	58126272	75725623	695	79137											
FAM19A2	338811	broad.mit.edu	37	chr12	62148788	62148788	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaccacctcacaagttcCcgttttaacatggtgagctg	8	13	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62148788	A	A	62148788	4	1	71	1	0	0	0	0	0	1	0	0	5579	632	22	2	283	2	FAM19A2	12	62148788	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4022516	62148788	71703107	696	79138											
FAM19A2	338811	broad.mit.edu	37	chr12	62273773	62273773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgatgagatcaacttcCtcaggcagctgcatgaagag	11	9	2	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62273773	A	A	62273773	1	1	71	0	1	0	0	0	0	0	0	0	5579	696	24	2		2	FAM19A2	12	62273773	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	124985	62273773	71578122	697	79139											
PTPRB	5787	broad.mit.edu	37	chr12	71029628	71029628	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcatagcaggtccatcGgggtgcctgggaacagcggt	15	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71029628	A	A	71029628	4	1	71	1	0	0	0	0	0	1	0	0	12904	1124	39	4	6563	4	PTPRB	12	71029628	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8755855	71029628	62822267	698	79140											
TRHDE	29953	broad.mit.edu	37	chr12	72712819	72712819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggagaggaagctggacGgtgtaccatggcttgggatt	17	5	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72712819	T	T	72712819	1	4	71	0	1	0	0	0	0	0	0	0	16603	1131	39	1		1	TRHDE	12	72712819	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1683191	72712819	61139076	699	79141											
NAV3	89795	broad.mit.edu	37	chr12	78362297	78362297	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatttttcatttcatacAgaaataagaaatggaaactt	5	4	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78362297	T	T	78362297	5	4	71	1	0	0	0	0	0	0	1	0	10279	202	7	5	504	5	NAV3	12	78362297	Splice_Site	SNP	A	TCGA-17-Z042-01A-01W-0746-08	5649478	78362297	55489598	700	79142											
C12orf26	84190	broad.mit.edu	37	chr12	82783762	82783762	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccactttttggtattattcAtatttcacctttttactgtc	4	9	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82783762	T	T	82783762	1	4	71	0	1	0	0	0	0	0	0	0	1692	232	8	5		5	C12orf26	12	82783762	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	4421465	82783762	51068133	701	79143											
SLC6A15	55117	broad.mit.edu	37	chr12	85279821	85279821	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatacctattaccataagtaGtattaaatatggtaaaagat	5	4	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85279821	C	C	85279821	3	2	71	1	0	0	0	0	1	0	0	0	14792	1020	36	4	2030	4	SLC6A15	12	85279821	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2496059	85279821	48572074	702	79144											
RASSF9	9182	broad.mit.edu	37	chr12	86198702	86198702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaagtgaattgaattcCttggccaggagttcatattc	10	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86198702	A	A	86198702	3	1	71	1	0	0	0	0	1	0	0	0	13201	680	24	2	225	2	RASSF9	12	86198702	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	918881	86198702	47653193	703	79145											
ANKS1B	56899	broad.mit.edu	37	chr12	99640282	99640282	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctccacaaatccccctGcgttcataacccactggtcc	4	19	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99640282	A	A	99640282	3	1	71	1	0	0	0	0	1	0	0	0	689	1319	46	4	1973	4	ANKS1B	12	99640282	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	13441580	99640282	34211613	704	79146											
ANKS1B	56899	broad.mit.edu	37	chr12	99776726	99776726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccaggagagtaagcagCctccctgccccctcccaccc	8	20	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99776726	A	A	99776726	1	1	71	0	1	0	0	0	0	0	0	0	689	754	26	3		3	ANKS1B	12	99776726	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	136444	99776726	34075169	705	79147											
ANO4	121601	broad.mit.edu	37	chr12	101504194	101504194	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttctagttcttcagtttgGattcacaactatctttgtgg	7	7	5	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101504194	A	A	101504194	3	1	71	1	0	0	0	0	1	0	0	0	699	1174	41	4	2139	4	ANO4	12	101504194	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1727468	101504194	32347701	706	79148											
SLC5A8	160728	broad.mit.edu	37	chr12	101577935	101577935	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcccactgtaagcacaGgccacaaaaagtccaggaag	9	11	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101577935	A	A	101577935	2	1	71	1	0	0	0	0	0	0	0	1	14785	987	35	4		4	SLC5A8	12	101577935	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	73741	101577935	32273960	707	79149											
BTBD11	121551	broad.mit.edu	37	chr12	108006518	108006518	+	Intron	DEL	G	-	-													cgattgaccacagccaccttGtaaacgttttccgttctctg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108006518	-	-	108006518	6	5	71	0	1	1	0	1	0	0	0	0	1548	1392	48	0		0	BTBD11	12	108006518	Intron	DEL	G	TCGA-17-Z042-01A-01W-0746-08	6428583	108006518	25845377	708	79150											
WSCD2	9671	broad.mit.edu	37	chr12	108618696	108618696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaccatgcagcagagctgcAggaaccacatgcttggctgg	13	11	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108618696	G	G	108618696	1	3	71	0	1	0	0	0	0	0	0	0	17534	203	7	5		5	WSCD2	12	108618696	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	612178	108618696	25233199	709	79151											
SART3	9733	broad.mit.edu	37	chr12	108929120	108929120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgcctccctccccacCccgagatcagttacctttcc	5	20	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108929120	A	A	108929120	1	1	71	0	1	0	0	0	0	0	0	0	13959	638	22	2		2	SART3	12	108929120	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	310424	108929120	24922775	710	79152											
MVK	4598	broad.mit.edu	37	chr12	110021523	110021523	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttacagtcccaccaacaGtgtaaaagtgttcctatttc	6	10	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110021523	A	A	110021523	1	1	71	0	1	0	0	0	0	0	0	0	10089	1044	36	4		4	MVK	12	110021523	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1092403	110021523	23830372	711	79153											
CLIP1	6249	broad.mit.edu	37	chr12	122864896	122864896	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccatataggataaggaaagGaaaagcgtaaagtattacca	9	5	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122864896	A	A	122864896	1	1	71	0	1	0	0	0	0	0	0	0	3564	1189	41	4		4	CLIP1	12	122864896	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	12843373	122864896	10986999	712	79154											
POLE	5426	broad.mit.edu	37	chr12	133250242	133250242	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctagcttggccttggcggcCgccttgagattatgactgcc	12	13	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133250242	T	T	133250242	2	4	71	1	0	0	0	0	0	0	0	1	12291	639	23	4		4	POLE	12	133250242	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10385346	133250242	601653	713	79155											
FLT1	2321	broad.mit.edu	37	chr13	29001515	29001515	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctaatgactttctcctgGgccacacatgaaggaccaca	8	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29001515	A	A	29001515	1	1	71	0	1	0	0	0	0	0	0	0	5999	1247	43	4		4	FLT1	13	29001515	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08		29001515	86168363	714	79156											
MTUS2	23281	broad.mit.edu	37	chr13	29855903	29855903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgccttctaaggacacaCccaagggggccggccgggtg	14	14	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29855903	A	A	29855903	3	1	71	1	0	0	0	0	1	0	0	0	10060	507	18	3	2751	3	MTUS2	13	29855903	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	854388	29855903	85313975	715	79157											
POSTN	10631	broad.mit.edu	37	chr13	38138608	38138608	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtttgatttctcttcatGtaacaaaagaggccatatac	6	7	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38138608	A	A	38138608	1	1	71	0	1	0	0	0	0	0	0	0	12354	1392	48	4		4	POSTN	13	38138608	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8282705	38138608	77031270	716	79158											
POSTN	10631	broad.mit.edu	37	chr13	38143960	38143960	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtattttatttcaggaccTatgagaaggacaatgaaaaa	9	4	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38143960	C	C	38143960	5	2	71	1	0	0	0	0	0	0	1	0	12354	1536	53	5	258	5	POSTN	13	38143960	Splice_Site	SNP	T	TCGA-17-Z042-01A-01W-0746-08	5352	38143960	77025918	717	79159											
ELF1	1997	broad.mit.edu	37	chr13	41507924	41507924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaacctgggcagggccCaagacaattgaaggaggaga	15	8	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41507924	G	G	41507924	3	3	71	1	0	0	0	0	1	0	0	0	5095	593	21	4	366	4	ELF1	13	41507924	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3363964	41507924	73661954	718	79160											
LCP1	3936	broad.mit.edu	37	chr13	46704920	46704920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagttgggtccttccctccCaatctgaggtttatttttat	7	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46704920	A	A	46704920	1	1	71	0	1	0	0	0	0	0	0	0	8763	609	21	2		2	LCP1	13	46704920	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5196996	46704920	68464958	719	79161											
RB1	5925	broad.mit.edu	37	chr13	49039354	49039354	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctagccccctaccttgtCaccaatacctcacattcctc	3	19	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49039354	G	G	49039354	4	3	71	1	0	0	0	0	0	1	0	0	13206	838	29	4	2429	4	RB1	13	49039354	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2334434	49039354	66130524	720	79162											
UTP14C	9724	broad.mit.edu	37	chr13	52603472	52603472	+	Frame_Shift_Del	DEL	A	-	-													aacatgcgctcagtggctggAaggcaagaactcccctggag							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52603472	-	-	52603472	7	5	71	1	0	1	0	1	0	0	0	0	17223	247	9	0	534	0	UTP14C	13	52603472	Frame_Shift_Del	DEL	A	TCGA-17-Z042-01A-01W-0746-08	3564118	52603472	62566406	721	79163											
NEK5	341676	broad.mit.edu	37	chr13	52676102	52676102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcatgtcgagaagctgGcgctcctgctctgcatataa	10	13	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52676102	T	T	52676102	3	4	71	1	0	0	0	0	1	0	0	0	10422	1203	42	3	1315	3	NEK5	13	52676102	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	72630	52676102	62493776	722	79164											
NEK3	4752	broad.mit.edu	37	chr13	52722418	52722418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactcagggcagatgactgCactggaaacatatacaaact	8	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52722418	A	A	52722418	1	1	71	0	1	0	0	0	0	0	0	0	10420	725	25	3		3	NEK3	13	52722418	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	46316	52722418	62447460	723	79165											
LECT1	11061	broad.mit.edu	37	chr13	53277868	53277868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttctggcagtgggtgtaGctccgcctacattctataca	9	11	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53277868	T	T	53277868	3	4	71	1	0	0	0	0	1	0	0	0	8784	962	34	3	141	3	LECT1	13	53277868	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	555450	53277868	61892010	724	79166											
LECT1	11061	broad.mit.edu	37	chr13	53282678	53282678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccggaacgcacatgataaGgattatcaggattgaaggct	11	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53282678	T	T	53282678	3	4	71	1	0	0	0	0	1	0	0	0	8784	1000	35	2	230	2	LECT1	13	53282678	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4810	53282678	61887200	725	79167											
PCDH17	27253	broad.mit.edu	37	chr13	58299106	58299106	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgcacctcaacaaaaggctCcctggatggctgtgaagcaa	10	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58299106	T	T	58299106	3	4	71	1	0	0	0	0	1	0	0	0	11606	855	30	4	3172	4	PCDH17	13	58299106	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5016428	58299106	56870772	726	79168											
LMO7	4008	broad.mit.edu	37	chr13	76414562	76414562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagtgccccgagtcgctgGgtgtgggatcaagaggagga	17	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76414562	T	T	76414562	3	4	71	1	0	0	0	0	1	0	0	0	8929	1241	43	2	3759	2	LMO7	13	76414562	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	18115456	76414562	38755316	727	79169											
EDNRB	1910	broad.mit.edu	37	chr13	78475144	78475144	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatcataattttcatattCataattataaattcaaccac	0	8	5	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78475144	G	G	78475144	1	3	71	0	1	0	0	0	0	0	0	0	4960	841	29	4		4	EDNRB	13	78475144	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2060582	78475144	36694734	728	79170											
SLITRK5	26050	broad.mit.edu	37	chr13	88328537	88328537	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgagatgaggccgcagacGcctttgagcaccacggggta	14	11	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88328537	A	A	88328537	2	1	71	1	0	0	0	0	0	0	0	1	14860	1074	38	4		4	SLITRK5	13	88328537	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9853393	88328537	26841341	729	79171											
SLC15A1	6564	broad.mit.edu	37	chr13	99379165	99379165	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagccattacaatagtttTtgctgtgtctaaactcagag	7	8	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99379165	C	C	99379165	1	2	71	0	1	0	0	0	0	0	0	0	14511	1856	64	5		5	SLC15A1	13	99379165	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	11050628	99379165	15790713	730	79172											
PCCA	5095	broad.mit.edu	37	chr13	100803131	100803131	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgcacccttaggaactggGcgttttcggccaccacggca	12	13	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100803131	C	C	100803131	1	2	71	0	1	0	0	0	0	0	0	0	11598	1218	42	4		4	PCCA	13	100803131	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1423966	100803131	14366747	731	79173											
TMTC4	84899	broad.mit.edu	37	chr13	101276134	101276134	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttcacagatgcacccactAttctcttgttggtgatggag	9	10	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101276134	T	T	101276134	1	4	71	0	1	0	0	0	0	0	0	0	16386	464	16	5		5	TMTC4	13	101276134	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	473003	101276134	13893744	732	79174											
TMTC4	84899	broad.mit.edu	37	chr13	101286899	101286899	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaattttaatgaatcttatCaaaatcattaaaaaaaacca	3	5	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101286899	A	A	101286899	1	1	71	0	1	0	0	0	0	0	0	0	16386	841	29	3		3	TMTC4	13	101286899	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10765	101286899	13882979	733	79175											
ITGBL1	9358	broad.mit.edu	37	chr13	102368050	102368050	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttattttttctgggccattAgaacagataaatgcgaagga	9	6	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102368050	T	T	102368050	1	4	71	0	1	0	0	0	0	0	0	0	7972	435	15	5		5	ITGBL1	13	102368050	3'UTR	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1081151	102368050	12801828	734	79176											
FGF14	2259	broad.mit.edu	37	chr13	102520913	102520913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataaactcatattactaaaCactggtgaataataaacagc	5	7	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102520913	A	A	102520913	1	1	71	0	1	0	0	0	0	0	0	0	5900	493	17	3		3	FGF14	13	102520913	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	152863	102520913	12648965	735	79177											
MYO16	23026	broad.mit.edu	37	chr13	109459159	109459159	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatatggccaggtagagTgatttgctgaattctttaaa	9	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109459159	G	G	109459159	1	3	71	0	1	0	0	0	0	0	0	0	10158	1711	59	5		5	MYO16	13	109459159	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	6938246	109459159	5710719	736	79178											
COL4A1	1282	broad.mit.edu	37	chr13	110839512	110839512	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttggggccaggaagaccCggatggccatctcttccagg	13	14	1	1	rs146480068	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110839512	A	A	110839512	2	1	71	1	0	0	0	0	0	0	0	1	3721	639	23	1		1	COL4A1	13	110839512	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1380353	110839512	4330366	737	79179											
COL4A1	1282	broad.mit.edu	37	chr13	110850855	110850855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcccaggggaaccaggaGgacccgggagcccatctctt	16	13	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110850855	T	T	110850855	3	4	71	1	0	0	0	0	1	0	0	0	3721	1000	35	2	3893	2	COL4A1	13	110850855	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	11343	110850855	4319023	738	79180											
COL4A1	1282	broad.mit.edu	37	chr13	110853257	110853257	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaagagaaagagagtgTtggatcaaacagaacagttc	11	5	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110853257	A	A	110853257	1	1	71	0	1	0	0	0	0	0	0	0	3721	1740	60	5		5	COL4A1	13	110853257	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2402	110853257	4316621	739	79181											
OR4K15	81127	broad.mit.edu	37	chr14	20444116	20444116	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccatggcctatgaccgtTatgttgctatatgcaaacct	7	10	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20444116	A	A	20444116	3	1	71	1	0	0	0	0	1	0	0	0	11164	1754	61	5	441	5	OR4K15	14	20444116	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08		20444116	86905424	740	79182											
OR4N5	390437	broad.mit.edu	37	chr14	20612688	20612688	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttgccccttccaggcttTcccagctgacaaggtagttt	8	14	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612688	A	A	20612688	3	1	71	1	0	0	0	0	1	0	0	0	11173	1783	62	5	796	5	OR4N5	14	20612688	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	168572	20612688	86736852	741	79183											
OXA1L	5018	broad.mit.edu	37	chr14	23239424	23239424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaaggcttcctcggagatGgcactttaccagaaaaaaca	8	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23239424	T	T	23239424	3	4	71	1	0	0	0	0	1	0	0	0	11422	1348	47	2	804	2	OXA1L	14	23239424	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2626736	23239424	84110116	742	79184											
CPNE6	9362	broad.mit.edu	37	chr14	24542767	24542767	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttctcccgggtgctggcCcttgagtatttttttgagga	12	9	2	2	rs143428110		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24542767	A	A	24542767	2	1	71	1	0	0	0	0	0	0	0	1	3848	610	22	2		2	CPNE6	14	24542767	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1303343	24542767	82806773	743	79185											
TM9SF1	10548	broad.mit.edu	37	chr14	24664328	24664328	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaactgaggtcccctggctCcacttgctcccattggcccc	9	18	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24664328	T	T	24664328	1	4	71	0	1	0	0	0	0	0	0	0	16100	870	30	4		4	TM9SF1	14	24664328	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	121561	24664328	82685212	744	79186											
GZMH	2999	broad.mit.edu	37	chr14	25078891	25078891	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaatgctggagggagaTgaaggagggatgggtacagt	17	3	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25078891	G	G	25078891	1	3	71	0	1	0	0	0	0	0	0	0	6982	1479	51	5		5	GZMH	14	25078891	5'Flank	SNP	T	TCGA-17-Z042-01A-01W-0746-08	414563	25078891	82270649	745	79187											
FOXG1	2290	broad.mit.edu	37	chr14	29237372	29237372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcgcctcacctccaccgGcctcaccttcatggaccgcg	9	20	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29237372	T	T	29237372	3	4	71	1	0	0	0	0	1	0	0	0	6067	1203	42	3	889	3	FOXG1	14	29237372	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4158481	29237372	78112168	746	79188											
HEATR5A	25938	broad.mit.edu	37	chr14	31762501	31762501	+	3'UTR	DEL	A	-	-													attaaggtgcttactattccAaaaaaaaaatcagaggaaac							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31762501	-	-	31762501	6	5	71	0	1	1	0	1	0	0	0	0	7098	145	5	0		0	HEATR5A	14	31762501	3'UTR	DEL	A	TCGA-17-Z042-01A-01W-0746-08	2525129	31762501	75587039	747	79189											
BRMS1L	84312	broad.mit.edu	37	chr14	36334116	36334116	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgtgatattcttacaGctaaattgaccttgactatt	6	7	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36334116	T	T	36334116	1	4	71	0	1	0	0	0	0	0	0	0	1526	986	34	3		3	BRMS1L	14	36334116	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4571615	36334116	71015424	748	79190											
LRFN5	145581	broad.mit.edu	37	chr14	42356412	42356412	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggaccttctcccatttgcAcaagatgactcggttagatg	11	10	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42356412	T	T	42356412	3	4	71	1	0	0	0	0	1	0	0	0	9028	159	6	5	586	5	LRFN5	14	42356412	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	6022296	42356412	64993128	749	79191											
FANCM	57697	broad.mit.edu	37	chr14	45605177	45605177	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggggatcggaaccgtagCggttgagctgctgctgctac	16	9	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45605177	A	A	45605177	1	1	71	0	1	0	0	0	0	0	0	0	5728	783	27	3		3	FANCM	14	45605177	5'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3248765	45605177	61744363	750	79192											
C14orf106	55320	broad.mit.edu	37	chr14	45704996	45704996	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacttcttaaaataacttaTcaataatgacagtcatttac	2	7	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45704996	A	A	45704996	1	1	71	0	1	0	0	0	0	0	0	0	1751	1450	50	5		5	C14orf106	14	45704996	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	99819	45704996	61644544	751	79193											
TXNDC16	57544	broad.mit.edu	37	chr14	53010265	53010265	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caactctaaagacattgaagCcggaaaacattatcagctgc	7	10	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53010265	G	G	53010265	3	3	71	1	0	0	0	0	1	0	0	0	16921	739	26	4	2542	4	TXNDC16	14	53010265	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7305269	53010265	54339275	752	79194											
DLGAP5	9787	broad.mit.edu	37	chr14	55621312	55621312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcagcaactgttaaactcTtattaacatgttaaagaaat	4	6	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55621312	C	C	55621312	1	2	71	0	1	0	0	0	0	0	0	0	4603	1624	56	5		5	DLGAP5	14	55621312	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2611047	55621312	51728228	753	79195											
SLC35F4	341880	broad.mit.edu	37	chr14	58063605	58063605	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggaagagatccaagagtAgttcatccatgacagacatt	10	7	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58063605	T	T	58063605	3	4	71	1	0	0	0	0	1	0	0	0	14705	420	15	5	1586	5	SLC35F4	14	58063605	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2442293	58063605	49285935	754	79196											
MAX	4149	broad.mit.edu	37	chr14	65551077	65551077	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaataaatagaatacaaaaTtactaacttttgtttactga	4	4	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65551077	C	C	65551077	1	2	71	0	1	0	0	0	0	0	0	0	9431	1508	52	5		5	MAX	14	65551077	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	7487472	65551077	41798463	755	79197											
PLEK2	26499	broad.mit.edu	37	chr14	67859275	67859275	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggatgaagtcgtcccccAagcccaaggtctcctcccat	8	16	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67859275	T	T	67859275	1	4	71	0	1	0	0	0	0	0	0	0	12149	145	5	5		5	PLEK2	14	67859275	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2308198	67859275	39490265	756	79198											
DPF3	8110	broad.mit.edu	37	chr14	73255285	73255285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggttccacttatcttaCcagaggaatctgccagttgc	10	10	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73255285	A	A	73255285	1	1	71	0	1	0	0	0	0	0	0	0	4758	522	18	3		3	DPF3	14	73255285	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5396010	73255285	34094255	757	79199											
C14orf115	55237	broad.mit.edu	37	chr14	74824464	74824464	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggacagcttccaccgGgggggcgtcgtgccacttca	14	14	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74824464	T	T	74824464	2	4	71	1	0	0	0	0	0	0	0	1	1753	1219	43	2		2	C14orf115	14	74824464	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1569179	74824464	32525076	758	79200											
LTBP2	4053	broad.mit.edu	37	chr14	75078141	75078141	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaccctccaaacttccctCtcccatgctcaccccgtgag	5	19	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75078141	A	A	75078141	1	1	71	0	1	0	0	0	0	0	0	0	9161	928	32	3		3	LTBP2	14	75078141	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	253677	75078141	32271399	759	79201											
FAM164C	79696	broad.mit.edu	37	chr14	75537689	75537689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagttggagtggaccgggCgttcccattgaaacccatgg	14	10	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75537689	A	A	75537689	3	1	71	1	0	0	0	0	1	0	0	0	5524	768	27	3	415	3	FAM164C	14	75537689	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	459548	75537689	31811851	760	79202											
ESRRB	2103	broad.mit.edu	37	chr14	76964383	76964383	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccctgggtttgagtcccAgctctgtcattagcttctgt	9	12	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76964383	T	T	76964383	1	4	71	0	1	0	0	0	0	0	0	0	5303	203	7	5		5	ESRRB	14	76964383	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1426694	76964383	30385157	761	79203											
VIPAR	63894	broad.mit.edu	37	chr14	77896160	77896160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggccaggcacactcaacaCattctaggttagtctatgtt	8	10	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77896160	T	T	77896160	1	4	71	0	1	0	0	0	0	0	0	0	17295	493	17	4		4	VIPAR	14	77896160	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	931777	77896160	29453380	762	79204											
VIPAR	63894	broad.mit.edu	37	chr14	77915816	77915816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggctcccaatgttaacttTatggccaaaagcagatctcc	8	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77915816	C	C	77915816	1	2	71	0	1	0	0	0	0	0	0	0	17295	1769	61	5		5	VIPAR	14	77915816	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	19656	77915816	29433724	763	79205											
TTC8	123016	broad.mit.edu	37	chr14	89338823	89338823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactggcagcggcatgctgGgcagtctgctttcttcagag	14	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89338823	T	T	89338823	1	4	71	0	1	0	0	0	0	0	0	0	16840	1247	43	2		2	TTC8	14	89338823	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	11423007	89338823	18010717	764	79206											
CATSPERB	79820	broad.mit.edu	37	chr14	92071603	92071603	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaggtgtaagtgaagagtCtttacagacggatgcgttgg	14	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92071603	A	A	92071603	1	1	71	0	1	0	0	0	0	0	0	0	2717	928	32	3		3	CATSPERB	14	92071603	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2732780	92071603	15277937	765	79207											
CATSPERB	79820	broad.mit.edu	37	chr14	92157944	92157944	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttgcttgcatatcagaaGgcctaacaaaacatagcaat	6	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92157944	A	A	92157944	1	1	71	0	1	0	0	0	0	0	0	0	2717	1015	35	4		4	CATSPERB	14	92157944	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	86341	92157944	15191596	766	79208											
KIAA1409	57578	broad.mit.edu	37	chr14	94007178	94007178	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattcggaatatggttcttaGtaagaaaaagaagttaacta	8	3	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94007178	C	C	94007178	5	2	71	1	0	0	0	0	0	0	1	0	8300	1043	36	4	1032	4	KIAA1409	14	94007178	Splice_Site	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1849234	94007178	13342362	767	79209											
VRK1	7443	broad.mit.edu	37	chr14	97304098	97304098	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattttacttttttaaacaGctgatatgaattcttcagag	5	5	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97304098	T	T	97304098	5	4	71	1	0	0	0	0	0	0	1	0	17346	985	34	3	166	3	VRK1	14	97304098	Splice_Site	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3296920	97304098	10045442	768	79210											
BCL11B	64919	broad.mit.edu	37	chr14	99723646	99723646	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcctgtctcctcctgaaggTcacctggatggtggaccctc	12	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99723646	A	A	99723646	1	1	71	0	1	0	0	0	0	0	0	0	1369	1682	58	5		5	BCL11B	14	99723646	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2419548	99723646	7625894	769	79211											
HHIPL1	84439	broad.mit.edu	37	chr14	100134402	100134402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcacttcctctttctgGggactggacagctagactga	10	12	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100134402	T	T	100134402	1	4	71	0	1	0	0	0	0	0	0	0	7160	1247	43	2		2	HHIPL1	14	100134402	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	410756	100134402	7215138	770	79212											
CYP46A1	10858	broad.mit.edu	37	chr14	100166397	100166397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcaactatgagcgctgGcacaagcagcggagagtcat	13	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100166397	T	T	100166397	3	4	71	1	0	0	0	0	1	0	0	0	4215	1212	42	3	420	3	CYP46A1	14	100166397	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	31995	100166397	7183143	771	79213											
MKRN3	7681	broad.mit.edu	37	chr15	23811385	23811385	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgcgcacatcgagcccccGactcaggaagtggcggaagc	14	14	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23811385	T	T	23811385	2	4	71	1	0	0	0	0	0	0	0	1	9701	1045	37	3		3	MKRN3	15	23811385	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08		23811385	78720007	772	79214											
NDN	4692	broad.mit.edu	37	chr15	23932081	23932081	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgcaccagctgcgccGgggctggcggtgccgggccc	16	17	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23932081	A	A	23932081	3	1	71	1	0	0	0	0	1	0	0	0	10342	1116	39	4	685	4	NDN	15	23932081	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	120696	23932081	78599311	773	79215											
GABRG3	2567	broad.mit.edu	37	chr15	27586124	27586124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcttttgttttggggtgtGttttggagggaaagaagggc	17	2	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27586124	T	T	27586124	1	4	71	0	1	0	0	0	0	0	0	0	6233	1392	48	3		3	GABRG3	15	27586124	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3654043	27586124	74945268	774	79216											
RYR3	6263	broad.mit.edu	37	chr15	33927798	33927798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccacaccctctgttcgcCtttcttctcacaatagctga	4	16	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33927798	A	A	33927798	1	1	71	0	1	0	0	0	0	0	0	0	13881	696	24	2		2	RYR3	15	33927798	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6341674	33927798	68603594	775	79217											
RYR3	6263	broad.mit.edu	37	chr15	33961598	33961598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgggagagaactgcccctGcccagaggagattcgggagg	16	10	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33961598	T	T	33961598	3	4	71	1	0	0	0	0	1	0	0	0	13881	1319	46	3	5809	3	RYR3	15	33961598	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	33800	33961598	68569794	776	79218											
CAPN3	825	broad.mit.edu	37	chr15	42652037	42652037	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagcgcatctgtggctccaAggacagcggctgagccccgg	14	13	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42652037	G	G	42652037	3	3	71	1	0	0	0	0	1	0	0	0	2654	63	3	5	88	5	CAPN3	15	42652037	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	8690439	42652037	59879355	777	79219											
PPIP5K1	9677	broad.mit.edu	37	chr15	43831727	43831727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgaatgaagagtacgtGgtggagaaaatgggttatct	16	2	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43831727	T	T	43831727	3	4	71	1	0	0	0	0	1	0	0	0	12433	1348	47	2	993	2	PPIP5K1	15	43831727	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1179690	43831727	58699665	778	79220											
CATSPER2	117155	broad.mit.edu	37	chr15	43939215	43939215	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagccggcgtgcccggccTcacttcctctttcatacaag	10	15	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43939215	A	A	43939215	1	1	71	0	1	0	0	0	0	0	0	0	2714	1566	54	5		5	CATSPER2	15	43939215	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	107488	43939215	58592177	779	79221											
CASC4	113201	broad.mit.edu	37	chr15	44620906	44620906	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacttgctgagcttcgtcagGaatttcttcgacaagaagac	9	9	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44620906	T	T	44620906	4	4	71	1	0	0	0	0	0	1	0	0	2688	1175	41	3	416	3	CASC4	15	44620906	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	681691	44620906	57910486	780	79222											
TEX9	374618	broad.mit.edu	37	chr15	56704371	56704372	+	Intron	INS	-	GT	GT													ttcagcctctacccccaagcINSgtgtgtgtgtgtgtgtgtgt					rs137938599	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	56704372	GT	GT	56704371	6	5	71	0	1	1	1	0	0	0	0	0	15907	783	27	0		0	TEX9	15	56704371	Intron	INS	-	TCGA-17-Z042-01A-01W-0746-08	12083465	56704371	45827021	781	79223											
SLTM	79811	broad.mit.edu	37	chr15	59179173	59179173	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcctcccgcagcacttaCctgtgatccacctcctcggt	7	18	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59179173	A	A	59179173	5	1	71	1	0	0	0	0	0	0	1	0	14868	521	18	3	280	3	SLTM	15	59179173	Splice_Site	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2474802	59179173	43352219	782	79224											
CCNB2	9133	broad.mit.edu	37	chr15	59409338	59409338	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaggataagtgagtcaagTgaattggagttcctaggcct	13	5	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59409338	A	A	59409338	1	1	71	0	1	0	0	0	0	0	0	0	2943	1711	59	5		5	CCNB2	15	59409338	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	230165	59409338	43122054	783	79225											
RASL12	51285	broad.mit.edu	37	chr15	65347321	65347321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgacttcacggtgaccagCttggcctgggccacagtggg	15	11	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65347321	A	A	65347321	3	1	71	1	0	0	0	0	1	0	0	0	13191	796	28	3	87	3	RASL12	15	65347321	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5937983	65347321	37184071	784	79226											
UACA	55075	broad.mit.edu	37	chr15	70979844	70979844	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttccatccctgtgtatcCagctggtatctgggagccat	9	13	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70979844	T	T	70979844	1	4	71	0	1	0	0	0	0	0	0	0	16950	609	21	4		4	UACA	15	70979844	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5632523	70979844	31551548	785	79227											
CYP1A1	1543	broad.mit.edu	37	chr15	75013626	75013627	+	Frame_Shift_Del	DEL	AG	-	-													tagggcagatgggatctgtcAgagagccggggccgccgtga							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75013627	-	-	75013626	7	5	71	1	0	1	0	1	0	0	0	0	4182	175	7	0	470	0	CYP1A1	15	75013626	Frame_Shift_Del	DEL	AG	TCGA-17-Z042-01A-01W-0746-08	4033782	75013626	27517766	786	79228											
SLC28A1	9154	broad.mit.edu	37	chr15	85467054	85467054	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttctgtagaggtaggcaAtgctgaggttcagagaagct	13	7	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85467054	G	G	85467054	1	3	71	0	1	0	0	0	0	0	0	0	14645	116	4	5		5	SLC28A1	15	85467054	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	10453428	85467054	17064338	787	79229											
C15orf58	390637	broad.mit.edu	37	chr15	90784186	90784186	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaacttcctatttgctgcctCccaacaatgaggactggggc	9	12	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90784186	T	T	90784186	3	4	71	1	0	0	0	0	1	0	0	0	1819	855	30	4	48	4	C15orf58	15	90784186	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5317132	90784186	11747206	788	79230											
IQGAP1	8826	broad.mit.edu	37	chr15	91035818	91035818	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccgacagaggagaaaggcCgaactagtgaaactgcaaca	11	9	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91035818	T	T	91035818	2	4	71	1	0	0	0	0	0	0	0	1	7884	639	23	4		4	IQGAP1	15	91035818	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	251632	91035818	11495574	789	79231											
LRRK1	79705	broad.mit.edu	37	chr15	101524123	101524123	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcaaacaccatatttcatAaagaatgtaattaacattgc	3	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101524123	G	G	101524123	1	3	71	0	1	0	0	0	0	0	0	0	9119	377	13	5		5	LRRK1	15	101524123	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	10488305	101524123	1007269	790	79232											
IFT140	9742	broad.mit.edu	37	chr16	1616396	1616396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtcaagagaaacacaccCagtgtcaccaagtccacagg	8	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1616396	A	A	1616396	1	1	71	0	1	0	0	0	0	0	0	0	7626	609	21	2		2	IFT140	16	1616396	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08		1616396	88738357	791	79233											
CRAMP1L	57585	broad.mit.edu	37	chr16	1720555	1720555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagtctggattggggccgGggccggggctagggcttggg	21	8	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1720555	T	T	1720555	1	4	71	0	1	0	0	0	0	0	0	0	3878	1247	43	2		2	CRAMP1L	16	1720555	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	104159	1720555	88634198	792	79234											
RPL3L	6123	broad.mit.edu	37	chr16	2002894	2002894	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtccttgtagaatcggcGccggcactcatcactgaggt	11	13	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2002894	A	A	2002894	3	1	71	1	0	0	0	0	1	0	0	0	13705	1087	38	4	909	4	RPL3L	16	2002894	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	282339	2002894	88351859	793	79235											
GLYR1	84656	broad.mit.edu	37	chr16	4867881	4867881	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcacatgggtcttctcttaTgccatggtctaaagctgtcc	9	11	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4867881	A	A	4867881	1	1	71	0	1	0	0	0	0	0	0	0	6547	1479	51	5		5	GLYR1	16	4867881	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2864987	4867881	85486872	794	79236											
A2BP1	54715	broad.mit.edu	37	chr16	6803733	6803735	+	Intron	DEL	AGC	-	-													tcttgtgtcagagttagcggAgcagcagctctggcctcctt					rs113991246	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6803735	-	-	6803733	6	5	71	0	1	1	0	1	0	0	0	0	3	319	11	0		0	A2BP1	16	6803733	Intron	DEL	AGC	TCGA-17-Z042-01A-01W-0746-08	1935852	6803733	83551020	795	79237											
RUNDC2A	84127	broad.mit.edu	37	chr16	12121416	12121416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgggacttggtggggtgGtgtatgggcacagaaatcca	18	6	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12121416	T	T	12121416	1	4	71	0	1	0	0	0	0	0	0	0	13854	1276	44	3		3	RUNDC2A	16	12121416	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5317683	12121416	78233337	796	79238											
KIAA0430	9665	broad.mit.edu	37	chr16	15697934	15697934	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctcgggtcccttccagctCtacacactctaatctagacc	5	17	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15697934	A	A	15697934	1	1	71	0	1	0	0	0	0	0	0	0	8247	928	32	3		3	KIAA0430	16	15697934	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3576518	15697934	74656819	797	79239											
ACSM2B	348158	broad.mit.edu	37	chr16	20551901	20551902	+	Intron	DNP	CC	AA	AA													aattagaaggctgtcctcctCctgaagaagataaatataac							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20551902	AA	AA	20551901	1	1	71	0	1	0	0	0	0	0	0	0	184	870	30	3		3	ACSM2B	16	20551901	Intron	DNP	CC	TCGA-17-Z042-01A-01W-0746-08	4853967	20551901	69802852	798	79240											
ACSM2B	348158	broad.mit.edu	37	chr16	20554515	20554515	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggaaatacccatcttcatCtttgattccccggtctccaa	5	14	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20554515	A	A	20554515	3	1	71	1	0	0	0	0	1	0	0	0	184	913	32	3	398	3	ACSM2B	16	20554515	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2614	20554515	69800238	799	79241											
UQCRC2	7385	broad.mit.edu	37	chr16	21974016	21974016	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattgagagcattacagctAtgtagaatctcaaatgttgg	9	6	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21974016	G	G	21974016	1	3	71	0	1	0	0	0	0	0	0	0	17146	464	16	5		5	UQCRC2	16	21974016	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1419501	21974016	68380737	800	79242											
USP31	57478	broad.mit.edu	37	chr16	23093964	23093964	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgccttagccagggcatggTgcaactcaaaatctctctgt	9	11	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23093964	C	C	23093964	1	2	71	0	1	0	0	0	0	0	0	0	17189	1711	59	5		5	USP31	16	23093964	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1119948	23093964	67260789	801	79243											
CACNG3	10368	broad.mit.edu	37	chr16	24372937	24372937	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtatcgattccggaggcGgtcaagttctcgctccaccg	12	13	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24372937	A	A	24372937	3	1	71	1	0	0	0	0	1	0	0	0	2584	1116	39	4	715	4	CACNG3	16	24372937	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1278973	24372937	65981816	802	79244											
IL21R	50615	broad.mit.edu	37	chr16	27456509	27456509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcccagagttaaaggaaGgctggaaccctcacctgctg	10	13	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27456509	T	T	27456509	3	4	71	1	0	0	0	0	1	0	0	0	7741	1000	35	2	719	2	IL21R	16	27456509	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3083572	27456509	62898244	803	79245											
SULT1A1	6817	broad.mit.edu	37	chr16	28619881	28619881	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacacttctccaggtcaccAccctggtagatcatgtccag	8	14	3	2	rs146871724		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28619881	G	G	28619881	2	3	71	1	0	0	0	0	0	0	0	1	15490	146	6	5		5	SULT1A1	16	28619881	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1163372	28619881	61734872	804	79246											
SRCAP	10847	broad.mit.edu	37	chr16	30747574	30747574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcagccacccaggccaaGgctgaacaggtggctgagct	14	13	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30747574	T	T	30747574	3	4	71	1	0	0	0	0	1	0	0	0	15253	991	35	2	6901	2	SRCAP	16	30747574	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2127693	30747574	59607179	805	79247											
STX1B	112755	broad.mit.edu	37	chr16	31004829	31004829	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgacgagggagagagctAcaatcacccttctccgccat	12	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31004829	G	G	31004829	1	3	71	0	1	0	0	0	0	0	0	0	15462	406	14	5		5	STX1B	16	31004829	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	257255	31004829	59349924	806	79248											
ITGAM	3684	broad.mit.edu	37	chr16	31289293	31289293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccccaccttcaggttatGctgccgccatcatcttacgg	8	16	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31289293	A	A	31289293	3	1	71	1	0	0	0	0	1	0	0	0	7957	1319	46	4	1265	4	ITGAM	16	31289293	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	284464	31289293	59065460	807	79249											
ITGAX	3687	broad.mit.edu	37	chr16	31372361	31372361	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgatttattatttttactGagttgatcttttctggggac	8	4	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31372361	A	A	31372361	1	1	71	0	1	0	0	0	0	0	0	0	7959	1305	45	4		4	ITGAX	16	31372361	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	83068	31372361	58982392	808	79250											
AKTIP	64400	broad.mit.edu	37	chr16	53534371	53534371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatctcggctcactgcaaCctccacctcctgggttcaag	9	15	3	1	rs140416148	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53534371	T	T	53534371	1	4	71	0	1	0	0	0	0	0	0	0	482	522	18	4		4	AKTIP	16	53534371	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	22162010	53534371	36820382	809	79251											
SLC6A2	6530	broad.mit.edu	37	chr16	55726005	55726005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccttgggccaggcttgtGggagggttttcaggagaagg	18	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55726005	T	T	55726005	1	4	71	0	1	0	0	0	0	0	0	0	14797	1363	47	2		2	SLC6A2	16	55726005	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2191634	55726005	34628748	810	79252											
MT1H	4496	broad.mit.edu	37	chr16	56704919	56704919	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtcgggacagccctgcTgtcagatgaaaacagaatga	12	8	1	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56704919	A	A	56704919	1	1	71	0	1	0	0	0	0	0	0	0	9996	1595	55	5		5	MT1H	16	56704919	3'UTR	SNP	T	TCGA-17-Z042-01A-01W-0746-08	978914	56704919	33649834	811	79253											
NLRC5	84166	broad.mit.edu	37	chr16	57093549	57093549	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggccctctcctcctttagAgagcagcttcaagctcactg	9	14	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57093549	G	G	57093549	1	3	71	0	1	0	0	0	0	0	0	0	10565	319	11	5		5	NLRC5	16	57093549	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	388630	57093549	33261204	812	79254											
GPR56	9289	broad.mit.edu	37	chr16	57693273	57693273	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggagatgtgggcacaCtcccctctctaccttcccac	9	16	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57693273	T	T	57693273	1	4	71	0	1	0	0	0	0	0	0	0	6765	580	20	4		4	GPR56	16	57693273	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	599724	57693273	32661480	813	79255											
CNGB1	1258	broad.mit.edu	37	chr16	57996551	57996551	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagaaaggcagtcagcagCgggagacctgccccagcccc	12	15	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57996551	T	T	57996551	1	4	71	0	1	0	0	0	0	0	0	0	3632	783	27	4		4	CNGB1	16	57996551	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	303278	57996551	32358202	814	79256											
CDH11	1009	broad.mit.edu	37	chr16	64982694	64982694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaagcttgggcaacctaGgaggggtgatcagagtcatt	13	7	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64982694	T	T	64982694	1	4	71	0	1	0	0	0	0	0	0	0	3127	1015	35	2		2	CDH11	16	64982694	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6986143	64982694	25372059	815	79257											
CDH11	1009	broad.mit.edu	37	chr16	65016088	65016088	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatcagcatcttctactgaGatcttgacggtcacagtgtc	8	11	6	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65016088	C	C	65016088	3	2	71	1	0	0	0	0	1	0	0	0	3127	932	33	4	1298	4	CDH11	16	65016088	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	33394	65016088	25338665	816	79258											
SLC7A6	9057	broad.mit.edu	37	chr16	68325349	68325349	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggatgaggtcatgagtcTaggccagagggtgggctgct	18	7	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68325349	C	C	68325349	1	2	71	0	1	0	0	0	0	0	0	0	14815	1537	53	5		5	SLC7A6	16	68325349	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	3309261	68325349	22029404	817	79259											
ST3GAL2	6483	broad.mit.edu	37	chr16	70415730	70415730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagtagtggtgccagttGccccggctgtcggccccgaa	13	15	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70415730	T	T	70415730	2	4	71	1	0	0	0	0	0	0	0	1	15333	1306	46	3		3	ST3GAL2	16	70415730	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2090381	70415730	19939023	818	79260											
HYDIN	54768	broad.mit.edu	37	chr16	71103347	71103347	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccagggatacgcagtttGtaagtcatggggatcaaaga	12	8	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71103347	A	A	71103347	2	1	71	1	0	0	0	0	0	0	0	1	7537	1372	48	4		4	HYDIN	16	71103347	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	687617	71103347	19251406	819	79261											
CALB2	794	broad.mit.edu	37	chr16	71406162	71406162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgtctccgattgtgtgGgattttcctgacctatgcct	10	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71406162	T	T	71406162	1	4	71	0	1	0	0	0	0	0	0	0	2600	1247	43	2		2	CALB2	16	71406162	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	302815	71406162	18948591	820	79262											
GLG1	2734	broad.mit.edu	37	chr16	74490446	74490446	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaggctggacagccacagcGaggagagtggcatggccttt	16	9	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74490446	A	A	74490446	1	1	71	0	1	0	0	0	0	0	0	0	6500	1073	37	4		4	GLG1	16	74490446	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3084284	74490446	15864307	821	79263											
GLG1	2734	broad.mit.edu	37	chr16	74530506	74530507	+	Nonsense_Mutation	DNP	CC	AA	AA													ttctttcaccaggcctttctCcaagcatgataccacctcac							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74530507	AA	AA	74530506	4	1	71	1	0	0	0	0	0	1	0	0	6500	864	30	3	2896	3	GLG1	16	74530506	Nonsense_Mutation	DNP	CC	TCGA-17-Z042-01A-01W-0746-08	40060	74530506	15824247	822	79264											
WDR59	79726	broad.mit.edu	37	chr16	74956075	74956075	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcttgagtttccaaacCtggaattcttcctaagtaaa	7	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74956075	T	T	74956075	1	4	71	0	1	0	0	0	0	0	0	0	17435	696	24	4		4	WDR59	16	74956075	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	425569	74956075	15398678	823	79265											
CNTNAP4	85445	broad.mit.edu	37	chr16	76311649	76311649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagctgggaattcctgtaaGtatacagcaaatgatttaaa	9	5	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76311649	A	A	76311649	1	1	71	0	1	0	0	0	0	0	0	0	3681	1044	36	4		4	CNTNAP4	16	76311649	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1355574	76311649	14043104	824	79266											
CNTNAP4	85445	broad.mit.edu	37	chr16	76572217	76572217	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttttacaaagaatacctttCtgtgatcattgccaaaaatg	5	8	2	2	rs35153994		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76572217	A	A	76572217	3	1	71	1	0	0	0	0	1	0	0	0	3681	913	32	3	3287	3	CNTNAP4	16	76572217	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	260568	76572217	13782536	825	79267											
ADAMTS18	170692	broad.mit.edu	37	chr16	77356279	77356279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttttgtttggggagcagGgagttccatctttcactttg	11	7	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77356279	T	T	77356279	3	4	71	1	0	0	0	0	1	0	0	0	263	1232	43	2	1588	2	ADAMTS18	16	77356279	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	784062	77356279	12998474	826	79268											
ADAMTS18	170692	broad.mit.edu	37	chr16	77369848	77369848	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgtcagagaccacctgggAaagcgcagggagttgccaac	13	13	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77369848	T	T	77369848	1	4	71	0	1	0	0	0	0	0	0	0	263	261	9	5		5	ADAMTS18	16	77369848	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	13569	77369848	12984905	827	79269											
VAT1L	57687	broad.mit.edu	37	chr16	77850897	77850897	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcccctggtgccaggatttGagtgttctgggattgttgaa	13	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77850897	T	T	77850897	4	4	71	1	0	0	0	0	0	1	0	0	17257	1291	45	3	319	3	VAT1L	16	77850897	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	481049	77850897	12503856	828	79270											
CDH13	1012	broad.mit.edu	37	chr16	83821265	83821265	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctctacaagcaatgcttgCagctaggtgcggtggctcac	12	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83821265	G	G	83821265	1	3	71	0	1	0	0	0	0	0	0	0	3129	725	25	4		4	CDH13	16	83821265	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5970368	83821265	6533488	829	79271											
ATP2C2	9914	broad.mit.edu	37	chr16	84456064	84456064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtagtaaaacagacagCcccttgacaggcggtgggga	13	10	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84456064	A	A	84456064	3	1	71	1	0	0	0	0	1	0	0	0	1148	738	26	3	723	3	ATP2C2	16	84456064	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	634799	84456064	5898689	830	79272											
RABEP1	9135	broad.mit.edu	37	chr17	5250110	5250110	+	Frame_Shift_Del	DEL	A	-	-													agaactgaatcattatctggAagctgagaaatcttgtagga							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5250110	-	-	5250110	7	5	71	1	0	1	0	1	0	0	0	0	13069	246	9	0	696	0	RABEP1	17	5250110	Frame_Shift_Del	DEL	A	TCGA-17-Z042-01A-01W-0746-08		5250110	75945100	831	79273											
TEKT1	83659	broad.mit.edu	37	chr17	6722663	6722663	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcttccagaactggacttCctcgagtctctgttctgaag	8	12	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6722663	A	A	6722663	4	1	71	1	0	0	0	0	0	1	0	0	15874	864	30	3	1075	3	TEKT1	17	6722663	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1472553	6722663	74472547	832	79274											
TP53	7157	broad.mit.edu	37	chr17	7578205	7578205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatagggcaccaccacaCtatgtcgaaaagtgtttctg	9	11	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578205	A	A	7578205	3	1	71	1	0	0	0	0	1	0	0	0	16505	565	20	3	650	3	TP53	17	7578205	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	855542	7578205	73617005	833	79275											
MYH4	4622	broad.mit.edu	37	chr17	10352228	10352228	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagctatgcaggcagcatTagatcgttccacatcaatca	9	10	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10352228	A	A	10352228	3	1	71	1	0	0	0	0	1	0	0	0	10131	1754	61	5	1541	5	MYH4	17	10352228	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2774023	10352228	70842982	834	79276											
SLC47A1	55244	broad.mit.edu	37	chr17	19458919	19458919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccagaggctctgcactgGcaaacttgatttcccagtac	8	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19458919	T	T	19458919	3	4	71	1	0	0	0	0	1	0	0	0	14761	1203	42	3	685	3	SLC47A1	17	19458919	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9106691	19458919	61736291	835	79277											
NOS2	4843	broad.mit.edu	37	chr17	26099385	26099385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtcccaggccagcgcCtctgattttcctgtctctgt	9	16	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26099385	A	A	26099385	3	1	71	1	0	0	0	0	1	0	0	0	10638	680	24	2	1864	2	NOS2	17	26099385	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	6640466	26099385	55095825	836	79278											
FOXN1	8456	broad.mit.edu	37	chr17	26864018	26864018	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgccaggctctgttcccaGcacatgtcaccctgacccct	8	17	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26864018	C	C	26864018	1	2	71	0	1	0	0	0	0	0	0	0	6079	986	34	4		4	FOXN1	17	26864018	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	764633	26864018	54331192	837	79279											
CORO6	84940	broad.mit.edu	37	chr17	27943986	27943986	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtagacgatgctggagtcGggatcgtaaaagggcaatag	16	5	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27943986	T	T	27943986	2	4	71	1	0	0	0	0	0	0	0	1	3790	1103	39	1		1	CORO6	17	27943986	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1079968	27943986	53251224	838	79280											
ACCN1	40	broad.mit.edu	37	chr17	31438993	31438993	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtccagcatgatctccagCccgttgcctgtccccccctt	7	18	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31438993	A	A	31438993	2	1	71	1	0	0	0	0	0	0	0	1	128	726	26	3		3	ACCN1	17	31438993	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3495007	31438993	49756217	839	79281											
ACCN1	40	broad.mit.edu	37	chr17	32478511	32478511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtcacccattcctggcGtggggagaggggctggcaca	16	10	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32478511	T	T	32478511	1	4	71	0	1	0	0	0	0	0	0	0	128	1160	40	3		3	ACCN1	17	32478511	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1039518	32478511	48716699	840	79282											
CCT6B	10693	broad.mit.edu	37	chr17	33259582	33259582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaaaagagagagagagaCagaaaagcaattcactattt	9	6	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33259582	A	A	33259582	1	1	71	0	1	0	0	0	0	0	0	0	2988	493	17	3		3	CCT6B	17	33259582	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	781071	33259582	47935628	841	79283											
RAD51L3	5892	broad.mit.edu	37	chr17	33433113	33433113	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtctctgtcagacaacctCtattacttgcagctaaaagt	6	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33433113	T	T	33433113	1	4	71	0	1	0	0	0	0	0	0	0	13098	928	32	4		4	RAD51L3	17	33433113	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	173531	33433113	47762097	842	79284											
FNDC8	54752	broad.mit.edu	37	chr17	33454109	33454109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctctgatgagaccagCatctctgccttctcatccac	7	15	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33454109	A	A	33454109	3	1	71	1	0	0	0	0	1	0	0	0	6032	709	25	3	264	3	FNDC8	17	33454109	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	20996	33454109	47741101	843	79285											
GGNBP2	79893	broad.mit.edu	37	chr17	34945877	34945877	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtctttcaatgaaacactCacgatgactactgcgccttc	6	13	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34945877	T	T	34945877	1	4	71	0	1	0	0	0	0	0	0	0	6423	841	29	4		4	GGNBP2	17	34945877	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1491768	34945877	46249333	844	79286											
SOCS7	30837	broad.mit.edu	37	chr17	36521316	36521316	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttagtttagaggcaagaCttgtaagagttgggagtaca	13	4	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36521316	G	G	36521316	1	3	71	0	1	0	0	0	0	0	0	0	15033	580	20	4		4	SOCS7	17	36521316	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1575439	36521316	44673894	845	79287											
CASC3	22794	broad.mit.edu	37	chr17	38319010	38319010	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcgaaagctatggaaggAtgagggtcgctgggagcatg	17	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38319010	C	C	38319010	3	2	71	1	0	0	0	0	1	0	0	0	2687	333	12	5	663	5	CASC3	17	38319010	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1797694	38319010	42876200	846	79288											
KRT33B	3884	broad.mit.edu	37	chr17	39521463	39521463	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagctcgatctccagggcAttgactgtgcgtctcagctc	11	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39521463	G	G	39521463	2	3	71	1	0	0	0	0	0	0	0	1	8541	214	8	5		5	KRT33B	17	39521463	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1202453	39521463	41673747	847	79289											
KRT34	3885	broad.mit.edu	37	chr17	39538334	39538334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgcatagtctccttctcGctgccattgaaggagccctc	8	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39538334	T	T	39538334	3	4	71	1	0	0	0	0	1	0	0	0	8542	1078	38	3	1047	3	KRT34	17	39538334	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	16871	39538334	41656876	848	79290											
KRT31	3881	broad.mit.edu	37	chr17	39550416	39550416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtggcacagggattgctgGgcagactggagacaaaagaa	15	7	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39550416	A	A	39550416	3	1	71	1	0	0	0	0	1	0	0	0	8538	1232	43	4	151	4	KRT31	17	39550416	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	12082	39550416	41644794	849	79291											
HAP1	9001	broad.mit.edu	37	chr17	39881414	39881414	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgaaaatcatacctgggcgGgagatagcgacatcttttga	12	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39881414	A	A	39881414	1	1	71	0	1	0	0	0	0	0	0	0	7019	1247	43	4		4	HAP1	17	39881414	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	330998	39881414	41313796	850	79292											
STAT3	6774	broad.mit.edu	37	chr17	40481576	40481576	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcctcccacataccaagTgtttgaattctgcagagagg	9	11	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40481576	C	C	40481576	3	2	71	1	0	0	0	0	1	0	0	0	15384	1696	59	5	1131	5	STAT3	17	40481576	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	600162	40481576	40713634	851	79293											
BRCA1	672	broad.mit.edu	37	chr17	41244214	41244214	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaactacttcttcatattCttgcttttttatttcaggat	4	8	4	1	rs80357903		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41244214	A	A	41244214	4	1	71	1	0	0	0	0	0	1	0	0	1507	922	32	3	2383	3	BRCA1	17	41244214	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	762638	41244214	39950996	852	79294											
C1QL1	10882	broad.mit.edu	37	chr17	43045078	43045078	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatggcgccgctgcccccCgcgcccggcagccccggagg	15	20	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43045078	A	A	43045078	2	1	71	1	0	0	0	0	0	0	0	1	1978	639	23	1		1	C1QL1	17	43045078	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1800864	43045078	38150132	853	79295											
CRHR1	1394	broad.mit.edu	37	chr17	43907806	43907806	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcaggttggtgacagcCgcctacaactacttccatgt	11	11	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43907806	A	A	43907806	2	1	71	1	0	0	0	0	0	0	0	1	3903	639	23	1		1	CRHR1	17	43907806	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	862728	43907806	37287404	854	79296											
IMP5	162540	broad.mit.edu	37	chr17	43922523	43922523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcccagctccgctcccCcagccagcggcccctccgcc	9	25	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43922523	A	A	43922523	3	1	71	1	0	0	0	0	1	0	0	0	7791	623	22	2	253	2	IMP5	17	43922523	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	14717	43922523	37272687	855	79297											
MAPT	4137	broad.mit.edu	37	chr17	44067401	44067401	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atacgtctcttctgtcacttCccgaactggcagttctggag	9	12	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44067401	T	T	44067401	3	4	71	1	0	0	0	0	1	0	0	0	9389	855	30	4	1366	4	MAPT	17	44067401	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	144878	44067401	37127809	856	79298											
FAM117A	81558	broad.mit.edu	37	chr17	47797530	47797530	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaacggcaagaagcccttCcaatatcacacagcaagacc	7	14	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47797530	A	A	47797530	1	1	71	0	1	0	0	0	0	0	0	0	5455	870	30	3		3	FAM117A	17	47797530	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3730129	47797530	33397680	857	79299											
ABCC3	8714	broad.mit.edu	37	chr17	48742558	48742558	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcgctttcatggtcttGctgattccactcaacggagc	11	11	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48742558	T	T	48742558	3	4	71	1	0	0	0	0	1	0	0	0	54	1310	46	3	1425	3	ABCC3	17	48742558	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	945028	48742558	32452652	858	79300											
ANKFN1	162282	broad.mit.edu	37	chr17	54526589	54526589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccatcaactgaggtctcGgtggcgccggtaattttagc	14	10	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54526589	T	T	54526589	1	4	71	0	1	0	0	0	0	0	0	0	625	1131	39	1		1	ANKFN1	17	54526589	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	5784031	54526589	26668621	859	79301											
MSI2	124540	broad.mit.edu	37	chr17	55752597	55752597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagaggagaggacagaGggtccccatcaacatcacac	14	11	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55752597	T	T	55752597	1	4	71	0	1	0	0	0	0	0	0	0	9970	1015	35	2		2	MSI2	17	55752597	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1226008	55752597	25442613	860	79302											
OR4D1	26689	broad.mit.edu	37	chr17	56232771	56232771	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagatgctggtggacttccTccatgagaccaagacgatct	10	10	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56232771	G	G	56232771	3	3	71	1	0	0	0	0	1	0	0	0	11147	1551	54	5	259	5	OR4D1	17	56232771	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	480174	56232771	24962439	861	79303											
EPX	8288	broad.mit.edu	37	chr17	56272478	56272478	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagagtggccttcactgcaGgcgttgactgtgagaggacc	14	11	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56272478	A	A	56272478	3	1	71	1	0	0	0	0	1	0	0	0	5242	1000	35	4	770	4	EPX	17	56272478	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	39707	56272478	24922732	862	79304											
MKS1	54903	broad.mit.edu	37	chr17	56291140	56291140	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcacctgtagggtcctttGaggcccgtgaagtcaggctt	12	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56291140	A	A	56291140	2	1	71	1	0	0	0	0	0	0	0	1	9702	1277	45	4		4	MKS1	17	56291140	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	18662	56291140	24904070	863	79305											
DHX40	79665	broad.mit.edu	37	chr17	57684554	57684554	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtgaaccctccaattcAggaagtgggaaaaggagcca	14	8	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57684554	C	C	57684554	1	2	71	0	1	0	0	0	0	0	0	0	4552	203	7	5		5	DHX40	17	57684554	3'UTR	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1393414	57684554	23510656	864	79306											
CSH2	1443	broad.mit.edu	37	chr17	61949776	61949776	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctccctccccttcagggTgtagagaagggcctggagga	13	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61949776	A	A	61949776	1	1	71	0	1	0	0	0	0	0	0	0	3975	1711	59	5		5	CSH2	17	61949776	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	4265222	61949776	19245434	865	79307											
CSHL1	1444	broad.mit.edu	37	chr17	61987959	61987959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgctggagaccagctccCactgttactcttctgggaac	9	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61987959	A	A	61987959	1	1	71	0	1	0	0	0	0	0	0	0	3976	609	21	2		2	CSHL1	17	61987959	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	38183	61987959	19207251	866	79308											
PRKCA	5578	broad.mit.edu	37	chr17	64683064	64683064	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctgccggtggtggcagcGggtagcttttctcatgtcga	14	10	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64683064	A	A	64683064	1	1	71	0	1	0	0	0	0	0	0	0	12613	1131	39	4		4	PRKCA	17	64683064	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2695105	64683064	16512146	867	79309											
DNAI2	64446	broad.mit.edu	37	chr17	72310378	72310378	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagccttcgactgcggcgCtatccctgtgtgccttcctt	10	15	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72310378	T	T	72310378	1	4	71	0	1	0	0	0	0	0	0	0	4650	812	28	4		4	DNAI2	17	72310378	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7627314	72310378	8884832	868	79310											
TYMS	7298	broad.mit.edu	37	chr18	669136	669136	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatcaaaaccaaccctgaCgacagaagaatcatcatgtg	6	12	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	669136	T	T	669136	2	4	71	1	0	0	0	0	0	0	0	1	16938	535	19	4		4	TYMS	18	669136	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08		669136	77408112	869	79311											
MYOM1	8736	broad.mit.edu	37	chr18	3168821	3168821	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaaagactcaccgtttcTgtaccactggatctctggct	8	11	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3168821	C	C	3168821	3	2	71	1	0	0	0	0	1	0	0	0	10185	1588	55	5	3844	5	MYOM1	18	3168821	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2499685	3168821	74908427	870	79312											
PSMA8	143471	broad.mit.edu	37	chr18	23750795	23750795	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttatatttctccaaatcAatttctggaaaaaacgtgtc	5	7	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23750795	T	T	23750795	1	4	71	0	1	0	0	0	0	0	0	0	12779	145	5	5		5	PSMA8	18	23750795	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	20581974	23750795	54326453	871	79313											
CDH2	1000	broad.mit.edu	37	chr18	25572712	25572712	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccactgattctgtacactgcGttccaggctggtgtatgggg	13	10	1	1	rs138990743		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25572712	C	C	25572712	3	2	71	1	0	0	0	0	1	0	0	0	3135	1136	40	4	1501	4	CDH2	18	25572712	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1821917	25572712	52504536	872	79314											
KLHL14	57565	broad.mit.edu	37	chr18	30322102	30322102	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaccatcaaagaatgttcCttgcttgcagatatctgttt	6	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30322102	T	T	30322102	1	4	71	0	1	0	0	0	0	0	0	0	8441	696	24	4		4	KLHL14	18	30322102	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4749390	30322102	47755146	873	79315											
C18orf34	374864	broad.mit.edu	37	chr18	30804956	30804956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacttaaacatttattgaGcctcttattcagtgacaggc	6	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30804956	T	T	30804956	1	4	71	0	1	0	0	0	0	0	0	0	1920	986	34	3		3	C18orf34	18	30804956	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	482854	30804956	47272292	874	79316											
INO80C	125476	broad.mit.edu	37	chr18	33060527	33060527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcttccatgctgatacCcttaaaacataataaaaata	4	9	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33060527	A	A	33060527	3	1	71	1	0	0	0	0	1	0	0	0	7818	637	22	2	437	2	INO80C	18	33060527	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2255571	33060527	45016721	875	79317											
PIK3C3	5289	broad.mit.edu	37	chr18	39609346	39609346	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcacaacagacatttgtaGatcggttggtgcatctaatg	10	8	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39609346	A	A	39609346	3	1	71	1	0	0	0	0	1	0	0	0	12007	942	33	4	1706	4	PIK3C3	18	39609346	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	6548819	39609346	38467902	876	79318											
RIT2	6014	broad.mit.edu	37	chr18	40695613	40695613	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggtaagaaccatcagcgtCgggctggctgctggtcctcc	14	12	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40695613	A	A	40695613	1	1	71	0	1	0	0	0	0	0	0	0	13498	899	31	3		3	RIT2	18	40695613	5'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1086267	40695613	37381635	877	79319											
SETBP1	26040	broad.mit.edu	37	chr18	42531910	42531910	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagacgatccccagcgacAgcggcattgggacagacaac	13	12	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42531910	T	T	42531910	3	4	71	1	0	0	0	0	1	0	0	0	14242	188	7	5	2808	5	SETBP1	18	42531910	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1836297	42531910	35545338	878	79320											
SLC14A1	6563	broad.mit.edu	37	chr18	43314234	43314234	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgctgtgtctcttgcccCacaggtcattaatagcatct	8	13	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43314234	T	T	43314234	1	4	71	0	1	0	0	0	0	0	0	0	14509	609	21	4		4	SLC14A1	18	43314234	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	782324	43314234	34763014	879	79321											
PIAS2	9063	broad.mit.edu	37	chr18	44416466	44416467	+	Missense_Mutation	DNP	CC	AA	AA													gcacggcatgggattgtcagCctcatttttcctaactacag							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44416467	AA	AA	44416466	3	1	71	1	0	0	0	0	1	0	0	0	11971	738	26	3	908	3	PIAS2	18	44416466	Missense_Mutation	DNP	CC	TCGA-17-Z042-01A-01W-0746-08	1102232	44416466	33660782	880	79322											
CXXC1	30827	broad.mit.edu	37	chr18	47810824	47810824	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcgcacacagccgggccCcaggcactggggcagtgacg	18	14	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47810824	T	T	47810824	3	4	71	1	0	0	0	0	1	0	0	0	4130	623	22	4	869	4	CXXC1	18	47810824	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3394358	47810824	30266424	881	79323											
CCDC68	80323	broad.mit.edu	37	chr18	52604064	52604064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagctgcatgtttggtacCtggagtaattgtttactgtc	10	7	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52604064	A	A	52604064	3	1	71	1	0	0	0	0	1	0	0	0	2868	695	24	2	564	2	CCDC68	18	52604064	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4793240	52604064	25473184	882	79324											
NEDD4L	23327	broad.mit.edu	37	chr18	56010129	56010129	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagttctaatcctcattgttAttctttagggtgccaaggac	9	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56010129	T	T	56010129	1	4	71	0	1	0	0	0	0	0	0	0	10406	464	16	5		5	NEDD4L	18	56010129	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	3406065	56010129	22067119	883	79325											
RAX	30062	broad.mit.edu	37	chr18	56936220	56936220	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccggggtcggatcccaagAcgttccccagtgcccctaga	12	16	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56936220	G	G	56936220	1	3	71	0	1	0	0	0	0	0	0	0	13204	290	10	5		5	RAX	18	56936220	3'UTR	SNP	A	TCGA-17-Z042-01A-01W-0746-08	926091	56936220	21141028	884	79326											
CDH20	28316	broad.mit.edu	37	chr18	59167789	59167789	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attccctgataatttataacTgctgctatgacagacccaac	5	11	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59167789	C	C	59167789	1	2	71	0	1	0	0	0	0	0	0	0	3136	1595	55	5		5	CDH20	18	59167789	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2231569	59167789	18909459	885	79327											
CDH20	28316	broad.mit.edu	37	chr18	59221602	59221602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggcgcaggcgggggccGcccccaagacgcggcaggac	20	14	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59221602	T	T	59221602	3	4	71	1	0	0	0	0	1	0	0	0	3136	1087	38	3	2122	3	CDH20	18	59221602	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	53813	59221602	18855646	886	79328											
SERPINB12	89777	broad.mit.edu	37	chr18	61226775	61226775	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttagctcttctgatagacAcagtgaaggtcacattttgt	9	7	3	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61226775	T	T	61226775	1	4	71	0	1	0	0	0	0	0	0	0	14212	174	6	5		5	SERPINB12	18	61226775	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2005173	61226775	16850473	887	79329											
SERPINB11	89778	broad.mit.edu	37	chr18	61377399	61377399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttctgagaattttttcCcttctgttctcaggcagtcg	9	9	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61377399	A	A	61377399	1	1	71	0	1	0	0	0	0	0	0	0	14211	638	22	2		2	SERPINB11	18	61377399	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	150624	61377399	16699849	888	79330											
SERPINB2	5055	broad.mit.edu	37	chr18	61558715	61558715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaacacactctttgccCtcaatttattcaagcatctg	5	12	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61558715	A	A	61558715	3	1	71	1	0	0	0	0	1	0	0	0	14214	681	24	2	39	2	SERPINB2	18	61558715	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	181316	61558715	16518533	889	79331											
RTTN	25914	broad.mit.edu	37	chr18	67732961	67732961	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataatggtctacaacttaTttcattaaaattttgttctt	3	6	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67732961	C	C	67732961	1	2	71	0	1	0	0	0	0	0	0	0	13848	1508	52	5		5	RTTN	18	67732961	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	6174246	67732961	10344287	890	79332											
CNDP1	84735	broad.mit.edu	37	chr18	72234677	72234677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatggtggaggtatccacAgagagcagtgcatggatgga	15	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72234677	G	G	72234677	1	3	71	0	1	0	0	0	0	0	0	0	3625	203	7	5		5	CNDP1	18	72234677	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	4501716	72234677	5842571	891	79333											
NFATC1	4772	broad.mit.edu	37	chr18	77170141	77170141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccctgggaaggacgttcGggggcttgtgctgctgttag	16	9	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77170141	T	T	77170141	1	4	71	0	1	0	0	0	0	0	0	0	10456	1131	39	1		1	NFATC1	18	77170141	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4935464	77170141	907107	892	79334											
VAV1	7409	broad.mit.edu	37	chr19	6853879	6853879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttatcctggagttactGtcctgagagcttgtgccccc	9	14	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6853879	T	T	6853879	1	4	71	0	1	0	0	0	0	0	0	0	17258	1392	48	3		3	VAV1	19	6853879	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08		6853879	52275104	893	79335											
FBN3	84467	broad.mit.edu	37	chr19	8173122	8173122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacagggttctgtactcaGctgtaaagggaaacaggctc	13	9	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8173122	T	T	8173122	3	4	71	1	0	0	0	0	1	0	0	0	5761	985	34	3	3922	3	FBN3	19	8173122	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1319243	8173122	50955861	894	79336											
MBD3L1	85509	broad.mit.edu	37	chr19	8953241	8953241	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctatccccagagggagagagGaaggatgaaagtccagaaca	13	8	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8953241	C	C	8953241	1	2	71	0	1	0	0	0	0	0	0	0	9437	1189	41	4		4	MBD3L1	19	8953241	5'Flank	SNP	G	TCGA-17-Z042-01A-01W-0746-08	780119	8953241	50175742	895	79337											
MUC16	94025	broad.mit.edu	37	chr19	9006659	9006659	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccagaccctgcagaacacTctccgtgatgttgaacttcc	7	14	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9006659	A	A	9006659	3	1	71	1	0	0	0	0	1	0	0	0	10067	1551	54	5	4098	5	MUC16	19	9006659	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	53418	9006659	50122324	896	79338											
MUC16	94025	broad.mit.edu	37	chr19	9016315	9016315	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacaacatcctcatgtccGtcatcatcattgtcagtaac	5	13	5	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9016315	A	A	9016315	1	1	71	0	1	0	0	0	0	0	0	0	10067	1160	40	4		4	MUC16	19	9016315	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9656	9016315	50112668	897	79339											
COL5A3	50509	broad.mit.edu	37	chr19	10116927	10116927	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagcagagagaagccgGgggtgtcaggcagaggtggg	20	7	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10116927	A	A	10116927	1	1	71	0	1	0	0	0	0	0	0	0	3730	1247	43	4		4	COL5A3	19	10116927	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1100612	10116927	49012056	898	79340											
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10221355	10221355	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgggcggctatgttgacCcccacgccctcctccagaaa	11	15	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10221355	T	T	10221355	1	4	71	0	1	0	0	0	0	0	0	0	12385	638	22	4		4	PPAN-P2RY11	19	10221355	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	104428	10221355	48907628	899	79341											
ELOF1	84337	broad.mit.edu	37	chr19	11664641	11664641	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatctgggccacttaggtCaagggcgatcattggcattg	13	9	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11664641	G	G	11664641	1	3	71	0	1	0	0	0	0	0	0	0	5114	841	29	4		4	ELOF1	19	11664641	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1443286	11664641	47464342	900	79342											
LPHN1	22859	broad.mit.edu	37	chr19	14296362	14296362	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgatcctcccacctcagtcTcccaaagtgctgggattaca	7	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14296362	C	C	14296362	1	2	71	0	1	0	0	0	0	0	0	0	9002	1566	54	5		5	LPHN1	19	14296362	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2631721	14296362	44832621	901	79343											
ZNF333	84449	broad.mit.edu	37	chr19	14827055	14827055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctggcctctgtgggtaaGgcagcttcatcttttctttc	9	11	4	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14827055	T	T	14827055	1	4	71	0	1	0	0	0	0	0	0	0	17976	1015	35	2		2	ZNF333	19	14827055	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	530693	14827055	44301928	902	79344											
CYP4F22	126410	broad.mit.edu	37	chr19	15658902	15658902	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggctcggcctctagttatAtctccattctccccagggac	9	14	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15658902	G	G	15658902	1	3	71	0	1	0	0	0	0	0	0	0	4222	464	16	5		5	CYP4F22	19	15658902	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	831847	15658902	43470081	903	79345											
BST2	684	broad.mit.edu	37	chr19	17514464	17514464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagctttcttctccctcCcggggccgccccctcctcac	6	24	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17514464	A	A	17514464	1	1	71	0	1	0	0	0	0	0	0	0	1543	638	22	2		2	BST2	19	17514464	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1855562	17514464	41614519	904	79346											
UNC13A	23025	broad.mit.edu	37	chr19	17728601	17728601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atagcgcaaggattgcaggtCcgggctcttctccaggaagg	14	10	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17728601	A	A	17728601	3	1	71	1	0	0	0	0	1	0	0	0	17110	855	30	3	659	3	UNC13A	19	17728601	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	214137	17728601	41400382	905	79347											
LPAR2	9170	broad.mit.edu	37	chr19	19737528	19737528	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagagcccagacggccaaaTaggagcggctgagcaggggt	16	10	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19737528	C	C	19737528	3	2	71	1	0	0	0	0	1	0	0	0	8992	1406	49	5	497	5	LPAR2	19	19737528	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2008927	19737528	39391455	906	79348											
ZNF430	80264	broad.mit.edu	37	chr19	21240857	21240857	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagcctctaacccgtcctGaattcttactaaacataaga	4	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21240857	T	T	21240857	1	4	71	0	1	0	0	0	0	0	0	0	18031	1305	45	3		3	ZNF430	19	21240857	3'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1503329	21240857	37888126	907	79349											
ZNF98	148198	broad.mit.edu	37	chr19	22574465	22574465	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagttgttaaaggctttGccgcattcttcacacttgta	10	8	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22574465	T	T	22574465	2	4	71	1	0	0	0	0	0	0	0	1	18332	1306	46	3		3	ZNF98	19	22574465	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1333608	22574465	36554518	908	79350											
CD22	933	broad.mit.edu	37	chr19	35822887	35822887	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgtggaagaagtaagcggCcagatggctcaaagacaaac	12	9	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35822887	T	T	35822887	1	4	71	0	1	0	0	0	0	0	0	0	3015	754	26	4		4	CD22	19	35822887	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	13248422	35822887	23306096	909	79351											
ARHGAP33	115703	broad.mit.edu	37	chr19	36272096	36272096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagttcattgaggcccacGgggtggtggatgggatctac	16	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36272096	T	T	36272096	3	4	71	1	0	0	0	0	1	0	0	0	884	1116	39	1	1073	1	ARHGAP33	19	36272096	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	449209	36272096	22856887	910	79352											
ZNF573	126231	broad.mit.edu	37	chr19	38283113	38283113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatggtgccaatgcccatgCctatgcccatgctatctgca	9	13	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38283113	A	A	38283113	1	1	71	0	1	0	0	0	0	0	0	0	18132	754	26	3		3	ZNF573	19	38283113	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2011017	38283113	20845870	911	79353											
RYR1	6261	broad.mit.edu	37	chr19	38993629	38993629	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgagggcaagcgctcttTagcatctcatttccaggccg	12	11	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38993629	C	C	38993629	1	2	71	0	1	0	0	0	0	0	0	0	13879	1769	61	5		5	RYR1	19	38993629	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	710516	38993629	20135354	912	79354											
RYR1	6261	broad.mit.edu	37	chr19	39058311	39058312	+	Intron	DNP	GG	TT	TT													acccagtaccatccaaacctGggccaggcacagggcgggcc							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39058312	TT	TT	39058311	1	4	71	0	1	0	0	0	0	0	0	0	13879	1363	47	2		2	RYR1	19	39058311	Intron	DNP	GG	TCGA-17-Z042-01A-01W-0746-08	64682	39058311	20070672	913	79355											
LGALS4	3960	broad.mit.edu	37	chr19	39294476	39294476	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctgagggaccccactaggGaggaagaccctcacctatca	12	13	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39294476	T	T	39294476	1	4	71	0	1	0	0	0	0	0	0	0	8817	1189	41	3		3	LGALS4	19	39294476	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	236165	39294476	19834507	914	79356											
SPTBN4	57731	broad.mit.edu	37	chr19	41012243	41012243	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacattgccgcccagagcgAgcgggtggaggctctcaatg	15	11	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41012243	T	T	41012243	3	4	71	1	0	0	0	0	1	0	0	0	15239	304	11	5	1812	5	SPTBN4	19	41012243	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1717767	41012243	18116740	915	79357											
AXL	558	broad.mit.edu	37	chr19	41745210	41745210	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccagtacccctggaggccTggcgcccaggtaagtccaaa	11	15	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41745210	C	C	41745210	3	2	71	1	0	0	0	0	1	0	0	0	1243	1580	55	5	1310	5	AXL	19	41745210	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	732967	41745210	17383773	916	79358											
POU2F2	5452	broad.mit.edu	37	chr19	42625874	42625874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggctgcttccggcctcccTgtcattctctcctgcattcc	7	18	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42625874	A	A	42625874	1	1	71	0	1	0	0	0	0	0	0	0	12368	1595	55	5		5	POU2F2	19	42625874	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	880664	42625874	16503109	917	79359											
ZNF283	284349	broad.mit.edu	37	chr19	44352078	44352078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggaaaggcctttagtcGtggctatcacctttctcaac	9	10	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44352078	T	T	44352078	3	4	71	1	0	0	0	0	1	0	0	0	17946	1145	40	3	1339	3	ZNF283	19	44352078	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1726204	44352078	14776905	918	79360											
CEACAM16	388551	broad.mit.edu	37	chr19	45202606	45202606	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagtactattgttttcccTattttacaaataaggaaact	6	6	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45202606	A	A	45202606	1	1	71	0	1	0	0	0	0	0	0	0	3218	1537	53	5		5	CEACAM16	19	45202606	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	850528	45202606	13926377	919	79361											
LIG1	3978	broad.mit.edu	37	chr19	48654613	48654613	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgacgatagacagaaCggtcagatggcaaaaaaatc	9	8	3	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48654613	T	T	48654613	1	4	71	0	1	0	0	0	0	0	0	0	8853	551	19	4		4	LIG1	19	48654613	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3452007	48654613	10474370	920	79362											
GRIN2D	2906	broad.mit.edu	37	chr19	48919120	48919120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttcgtccccctcctcaCccacctcgcaatccctcttg	3	22	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48919120	A	A	48919120	1	1	71	0	1	0	0	0	0	0	0	0	6848	522	18	3		3	GRIN2D	19	48919120	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	264507	48919120	10209863	921	79363											
NTN5	126147	broad.mit.edu	37	chr19	49166837	49166837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgcagtgggctcctggGgcctagaccacagccttctg	13	13	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49166837	T	T	49166837	1	4	71	0	1	0	0	0	0	0	0	0	10798	1247	43	2		2	NTN5	19	49166837	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	247717	49166837	9962146	922	79364											
RCN3	57333	broad.mit.edu	37	chr19	50040313	50040313	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagaatttcatgacgtggagGatgcagagacctacaaaaag	11	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50040313	C	C	50040313	3	2	71	1	0	0	0	0	1	0	0	0	13289	1174	41	4	479	4	RCN3	19	50040313	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	873476	50040313	9088670	923	79365											
NR1H2	7376	broad.mit.edu	37	chr19	50881606	50881606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctatgcctgccggggtGgcggaacctgccagatggac	17	12	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50881606	T	T	50881606	3	4	71	1	0	0	0	0	1	0	0	0	10712	1348	47	2	392	2	NR1H2	19	50881606	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	841293	50881606	8247377	924	79366											
KLK1	3816	broad.mit.edu	37	chr19	51327164	51327165	+	5'Flank	DEL	CC	-	-													gcctgggggctggacaattgCcccccccccctccgatcccc					rs35641597		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51327165	-	-	51327164	6	5	71	0	1	1	0	1	0	0	0	0	8468	754	26	0		0	KLK1	19	51327164	5'Flank	DEL	CC	TCGA-17-Z042-01A-01W-0746-08	445558	51327164	7801819	925	79367											
C19orf75	284369	broad.mit.edu	37	chr19	51770835	51770835	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcggaatactgataataagAcccacagggaaaggagcaca	10	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51770835	G	G	51770835	1	3	71	0	1	0	0	0	0	0	0	0	1969	290	10	5		5	C19orf75	19	51770835	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	443671	51770835	7358148	926	79368											
SIGLEC8	27181	broad.mit.edu	37	chr19	51961204	51961204	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacctgtcacaaacacagaCagctgcttagttttgtaatt	6	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51961204	G	G	51961204	2	3	71	1	0	0	0	0	0	0	0	1	14427	465	17	4		4	SIGLEC8	19	51961204	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	190369	51961204	7167779	927	79369											
ZNF577	84765	broad.mit.edu	37	chr19	52361469	52361469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctctcattatataaagccTacttcccacaatctccgtgc	3	16	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52361469	A	A	52361469	1	1	71	0	1	0	0	0	0	0	0	0	18136	1537	53	5		5	ZNF577	19	52361469	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	400265	52361469	6767514	928	79370											
ZNF841	284371	broad.mit.edu	37	chr19	52580094	52580094	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttatgaagctttttatttgtGaatcaacaaggcttcagtct	7	6	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52580094	A	A	52580094	1	1	71	0	1	0	0	0	0	0	0	0	18318	1305	45	4		4	ZNF841	19	52580094	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	218625	52580094	6548889	929	79371											
ZNF347	84671	broad.mit.edu	37	chr19	53652730	53652730	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagtgggccgatatccaagTtgtgatataataaaatatac	8	5	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53652730	A	A	53652730	1	1	71	0	1	0	0	0	0	0	0	0	17987	1740	60	5		5	ZNF347	19	53652730	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	1072636	53652730	5476253	930	79372											
ZNF761	388561	broad.mit.edu	37	chr19	53945337	53945337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgcctggccactgccctGcaaaagctggaagaagcggg	15	12	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53945337	T	T	53945337	1	4	71	0	1	0	0	0	0	0	0	0	18265	1334	46	3		3	ZNF761	19	53945337	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	292607	53945337	5183646	931	79373											
LILRA4	23547	broad.mit.edu	37	chr19	54850071	54850071	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgtcttcacccccagcTgcccaggggtggtcccttgt	11	16	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54850071	A	A	54850071	1	1	71	0	1	0	0	0	0	0	0	0	8859	1595	55	5		5	LILRA4	19	54850071	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	904734	54850071	4278912	932	79374											
KIR2DL3	3804	broad.mit.edu	37	chr19	55268299	55268299	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggctccacatcctcctctCtaaggcggtgcctccttctc	8	17	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55268299	A	A	55268299	1	1	71	0	1	0	0	0	0	0	0	0	8388	928	32	3		3	KIR2DL3	19	55268299	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	418228	55268299	3860684	933	79375											
KIR2DL1	3802	broad.mit.edu	37	chr19	55290155	55290155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccgcttttggaaccctgGggaggtgggaaccttggatt	14	8	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55290155	T	T	55290155	1	4	71	0	1	0	0	0	0	0	0	0	8387	1247	43	2		2	KIR2DL1	19	55290155	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	21856	55290155	3838828	934	79376											
FCAR	2204	broad.mit.edu	37	chr19	55385745	55385745	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggctgaggccgtgtcagcacGatggaccccaaacagaccac	12	14	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55385745	C	C	55385745	1	2	71	0	1	0	0	0	0	0	0	0	5830	1073	37	4		4	FCAR	19	55385745	5'UTR	SNP	G	TCGA-17-Z042-01A-01W-0746-08	95590	55385745	3743238	935	79377											
NLRP2	55655	broad.mit.edu	37	chr19	55493371	55493371	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtcaggctggtgttgaactCccaatgtcaggtgatctgcc	13	10	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55493371	A	A	55493371	1	1	71	0	1	0	0	0	0	0	0	0	10572	870	30	3		3	NLRP2	19	55493371	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	107626	55493371	3635612	936	79378											
PPP1R12C	54776	broad.mit.edu	37	chr19	55614842	55614842	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcgcctgtgcgggggtgCcgggcctctggcatggcgcc	20	13	1	0	rs144418099	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55614842	A	A	55614842	2	1	71	1	0	0	0	0	0	0	0	1	12457	726	26	3		3	PPP1R12C	19	55614842	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	121471	55614842	3514141	937	79379											
PTPRH	5794	broad.mit.edu	37	chr19	55715197	55715197	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctatttactccgtctttcTccacccacacagaacacgta	4	15	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55715197	C	C	55715197	3	2	71	1	0	0	0	0	1	0	0	0	12911	1551	54	5	2572	5	PTPRH	19	55715197	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	100355	55715197	3413786	938	79380											
NLRP4	147945	broad.mit.edu	37	chr19	56369278	56369278	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgatgatggcctggtcGgacaacaagatctttcggga	13	8	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56369278	T	T	56369278	2	4	71	1	0	0	0	0	0	0	0	1	10574	1103	39	1		1	NLRP4	19	56369278	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	654081	56369278	2759705	939	79381											
NLRP4	147945	broad.mit.edu	37	chr19	56370504	56370504	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctaactttcatattattgAcaacgtggacttggtggttt	9	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56370504	C	C	56370504	3	2	71	1	0	0	0	0	1	0	0	0	10574	275	10	5	1751	5	NLRP4	19	56370504	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1226	56370504	2758479	940	79382											
NLRP8	126205	broad.mit.edu	37	chr19	56485012	56485012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatctgtgtgcttctctcCcataggatagagaactgcaa	9	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56485012	A	A	56485012	1	1	71	0	1	0	0	0	0	0	0	0	10578	638	22	2		2	NLRP8	19	56485012	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	114508	56485012	2643971	941	79383											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56833165	56833165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttgattcctacccagtaGtaaggtaactgccaccactt	7	12	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56833165	T	T	56833165	1	4	71	0	1	0	0	0	0	0	0	0	18367	1044	36	3		3	ZSCAN5A	19	56833165	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	348153	56833165	2295818	942	79384											
PEG3	5178	broad.mit.edu	37	chr19	57328692	57328692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgaattaaacctaaagcctCccctaaatgcattcccttca	3	13	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57328692	A	A	57328692	3	1	71	1	0	0	0	0	1	0	0	0	11814	855	30	3	3652	3	PEG3	19	57328692	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	495527	57328692	1800291	943	79385											
ZNF814	730051	broad.mit.edu	37	chr19	58384768	58384768	+	Frame_Shift_Del	DEL	C	-	-													actaaaacatttcccacattCcccacacttaaaaggtcttt							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58384768	-	-	58384768	7	5	71	1	0	1	0	1	0	0	0	0	18305	864	30	0	581	0	ZNF814	19	58384768	Frame_Shift_Del	DEL	C	TCGA-17-Z042-01A-01W-0746-08	1056076	58384768	744215	944	79386											
ZNF135	7694	broad.mit.edu	37	chr19	58574983	58574983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttctccctctgcatctgcTctctaattcttcagagcaaa	5	13	6	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58574983	C	C	58574983	1	2	71	0	1	0	0	0	0	0	0	0	17851	1538	54	5		5	ZNF135	19	58574983	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	190215	58574983	554000	945	79387											
SIRPA	140885	broad.mit.edu	37	chr20	1917913	1917913	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgagtgagtgggccaGgggctatagaatgaccttct	14	7	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1917913	T	T	1917913	1	4	71	0	1	0	0	0	0	0	0	0	14445	1015	35	2		2	SIRPA	20	1917913	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08		1917913	61107607	946	79388											
TGM6	343641	broad.mit.edu	37	chr20	2411253	2411254	+	Intron	DNP	TC	AA	AA													tcatcaccatcaaggtgaccTcagcctgcatctaccatgct							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2411254	AA	AA	2411253	1	1	71	0	1	0	0	0	0	0	0	0	15957	1566	54	5		5	TGM6	20	2411253	Intron	DNP	TC	TCGA-17-Z042-01A-01W-0746-08	493340	2411253	60614267	947	79389											
IDH3B	3420	broad.mit.edu	37	chr20	2644634	2644634	+	Frame_Shift_Del	DEL	C	-	-													cctctccatgccccagggttCccggcggagaccagcgcctg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2644634	-	-	2644634	7	5	71	1	0	1	0	1	0	0	0	0	7567	842	30	0	1307	0	IDH3B	20	2644634	Frame_Shift_Del	DEL	C	TCGA-17-Z042-01A-01W-0746-08	233381	2644634	60380886	948	79390											
FAM113A	64773	broad.mit.edu	37	chr20	2819684	2819684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgttgtgcagctcgcccagCtggcccccagccaccagctg	11	19	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2819684	A	A	2819684	3	1	71	1	0	0	0	0	1	0	0	0	5447	796	28	3	1135	3	FAM113A	20	2819684	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	175050	2819684	60205836	949	79391											
ATRN	8455	broad.mit.edu	37	chr20	3553326	3553326	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaagtatagcatcCaattgttatctgagtctcta	5	6	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3553326	G	G	3553326	1	3	71	0	1	0	0	0	0	0	0	0	1210	609	21	4		4	ATRN	20	3553326	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	733642	3553326	59472194	950	79392											
ADAM33	80332	broad.mit.edu	37	chr20	3653164	3653164	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccccgaaaccctcacccTgaaccttccatgccctcacc	4	22	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3653164	A	A	3653164	1	1	71	0	1	0	0	0	0	0	0	0	250	1595	55	5		5	ADAM33	20	3653164	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	99838	3653164	59372356	951	79393											
SIGLEC1	6614	broad.mit.edu	37	chr20	3675261	3675261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgacacagcccaggactGggggactgcattccttcccc	11	14	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3675261	T	T	3675261	1	4	71	0	1	0	0	0	0	0	0	0	14418	1363	47	2		2	SIGLEC1	20	3675261	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	22097	3675261	59350259	952	79394											
CHGB	1114	broad.mit.edu	37	chr20	5904628	5904628	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggaccagctccttcactAcaggaagaagtcagctgagt	10	11	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5904628	G	G	5904628	3	3	71	1	0	0	0	0	1	0	0	0	3370	391	14	5	1852	5	CHGB	20	5904628	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2229367	5904628	57120892	953	79395											
PLCB1	23236	broad.mit.edu	37	chr20	8702923	8702923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatctgtaattgattttaGgtaaaatatgtgttacaaat	7	2	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8702923	T	T	8702923	1	4	71	0	1	0	0	0	0	0	0	0	12122	1015	35	2		2	PLCB1	20	8702923	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2798295	8702923	54322597	954	79396											
PLCB1	23236	broad.mit.edu	37	chr20	8769323	8769323	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatggataaaaagaggcagGagaagataacagaagctaaa	11	3	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8769323	T	T	8769323	4	4	71	1	0	0	0	0	0	1	0	0	12122	1175	41	3	3346	3	PLCB1	20	8769323	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	66400	8769323	54256197	955	79397											
SNAP25	6616	broad.mit.edu	37	chr20	10279989	10279989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcatcatcgggaacctcCgtcacatggccctggatatg	12	13	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10279989	A	A	10279989	3	1	71	1	0	0	0	0	1	0	0	0	14944	652	23	1	625	1	SNAP25	20	10279989	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1510666	10279989	52745531	956	79398											
SLC24A3	57419	broad.mit.edu	37	chr20	19496351	19496351	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggtccttcgagctctgtaGggggccatcaccaaatggag	15	10	2	0	rs148791836	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19496351	C	C	19496351	1	2	71	0	1	0	0	0	0	0	0	0	14581	1015	35	4		4	SLC24A3	20	19496351	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9216362	19496351	43529169	957	79399											
RALGAPA2	57186	broad.mit.edu	37	chr20	20563841	20563841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcctcattggtacagcCcagagttgtgtcactgttgg	11	11	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20563841	A	A	20563841	3	1	71	1	0	0	0	0	1	0	0	0	13122	623	22	2	3141	2	RALGAPA2	20	20563841	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1067490	20563841	42461679	958	79400											
XRN2	22803	broad.mit.edu	37	chr20	21367514	21367514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcctacagaggcgttgGggctgaacctctgctcccat	10	13	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21367514	T	T	21367514	3	4	71	1	0	0	0	0	1	0	0	0	17587	1232	43	2	2771	2	XRN2	20	21367514	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	803673	21367514	41658006	959	79401											
DEFB116	245930	broad.mit.edu	37	chr20	29891333	29891333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgatttaaaggaacacGccctaagactattaagggca	9	8	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29891333	T	T	29891333	1	4	71	0	1	0	0	0	0	0	0	0	4444	1102	38	3		3	DEFB116	20	29891333	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8523819	29891333	33134187	960	79402											
DEFB119	245932	broad.mit.edu	37	chr20	29978112	29978112	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatgatcctgggcaaacctCccgaagctgcaggagagaag	13	10	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29978112	A	A	29978112	1	1	71	0	1	0	0	0	0	0	0	0	4446	870	30	3		3	DEFB119	20	29978112	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	86779	29978112	33047408	961	79403											
MYLK2	85366	broad.mit.edu	37	chr20	30419045	30419045	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggtaaggtggtcccaccTcccctatccctcagtcaggg	10	15	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30419045	A	A	30419045	1	1	71	0	1	0	0	0	0	0	0	0	10151	1566	54	5		5	MYLK2	20	30419045	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	440933	30419045	32606475	962	79404											
ASIP	434	broad.mit.edu	37	chr20	32848270	32848270	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgccacctgaggagaagctCcgagatgacaggagcctgag	14	11	0	5			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32848270	A	A	32848270	2	1	71	1	0	0	0	0	0	0	0	1	1047	842	30	3		3	ASIP	20	32848270	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2429225	32848270	30177250	963	79405											
KIAA1755	85449	broad.mit.edu	37	chr20	36868037	36868037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcctctttctggggagCctgcagaagcttctggcaag	15	10	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36868037	A	A	36868037	3	1	71	1	0	0	0	0	1	0	0	0	8327	739	26	3	2006	3	KIAA1755	20	36868037	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4019767	36868037	26157483	964	79406											
DHX35	60625	broad.mit.edu	37	chr20	37639012	37639012	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcagctgaaagcactaGgaattgacaatgtcctcagg	10	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37639012	A	A	37639012	3	1	71	1	0	0	0	0	1	0	0	0	4548	1001	35	4	1362	4	DHX35	20	37639012	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	770975	37639012	25386508	965	79407											
PTPRT	11122	broad.mit.edu	37	chr20	40748375	40748375	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaacaatctcaaggacCtctggagagtcttcagccta	8	10	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40748375	T	T	40748375	1	4	71	0	1	0	0	0	0	0	0	0	12920	696	24	4		4	PTPRT	20	40748375	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3109363	40748375	22277145	966	79408											
PTPRT	11122	broad.mit.edu	37	chr20	40877394	40877394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggccagcgatcacgcCagccatcttcacggtgttgt	13	12	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40877394	A	A	40877394	3	1	71	1	0	0	0	0	1	0	0	0	12920	594	21	2	2152	2	PTPRT	20	40877394	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	129019	40877394	22148126	967	79409											
PTPRT	11122	broad.mit.edu	37	chr20	41409594	41409594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtctgtgtggatagcatGgccaacatccttgaactctc	9	10	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41409594	T	T	41409594	1	4	71	0	1	0	0	0	0	0	0	0	12920	1363	47	2		2	PTPRT	20	41409594	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	532200	41409594	21615926	968	79410											
L3MBTL	26013	broad.mit.edu	37	chr20	42158947	42158947	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctatcgcctacgcctGcactttgatgggtattctga	11	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42158947	T	T	42158947	2	4	71	1	0	0	0	0	0	0	0	1	8663	1306	46	3		3	L3MBTL	20	42158947	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	749353	42158947	20866573	969	79411											
GDAP1L1	78997	broad.mit.edu	37	chr20	42885907	42885907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacctgggcgaggaggtgCccgtcatcatccaccgcgac	12	15	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42885907	A	A	42885907	3	1	71	1	0	0	0	0	1	0	0	0	6371	739	26	3	301	3	GDAP1L1	20	42885907	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	726960	42885907	20139613	970	79412											
WFDC5	149708	broad.mit.edu	37	chr20	43743611	43743611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtagagacaatctggtcCccccagcagagggatttccc	11	12	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43743611	A	A	43743611	1	1	71	0	1	0	0	0	0	0	0	0	17481	638	22	2		2	WFDC5	20	43743611	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	857704	43743611	19281909	971	79413											
SLPI	6590	broad.mit.edu	37	chr20	43880953	43880953	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcctgctgtgtgccaagCctttccccaaaggaggatat	10	11	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43880953	A	A	43880953	1	1	71	0	1	0	0	0	0	0	0	0	14867	754	26	3		3	SLPI	20	43880953	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	137342	43880953	19144567	972	79414											
SLC12A5	57468	broad.mit.edu	37	chr20	44682365	44682365	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggtgagtccccaggagaCaccgctggggttccacctgg	15	12	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44682365	G	G	44682365	1	3	71	0	1	0	0	0	0	0	0	0	14499	493	17	4		4	SLC12A5	20	44682365	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	801412	44682365	18343155	973	79415											
DDX27	55661	broad.mit.edu	37	chr20	47853084	47853084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagtgcagaatggctcGgtgggcggggcaaggacaga	20	7	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47853084	T	T	47853084	1	4	71	0	1	0	0	0	0	0	0	0	4387	1131	39	1		1	DDX27	20	47853084	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3170719	47853084	15172436	974	79416											
KCNB1	3745	broad.mit.edu	37	chr20	47991190	47991190	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaaggatgcggagaattcGcatgatgcggaagatctgga	14	6	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47991190	A	A	47991190	4	1	71	1	0	0	0	0	0	1	0	0	8082	1095	38	4	1673	4	KCNB1	20	47991190	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	138106	47991190	15034330	975	79417											
PTGIS	5740	broad.mit.edu	37	chr20	48166809	48166809	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagagtgtgattttgaaTggagcagtcggggaggtaat	16	3	0	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48166809	A	A	48166809	1	1	71	0	1	0	0	0	0	0	0	0	12858	1479	51	5		5	PTGIS	20	48166809	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	175619	48166809	14858711	976	79418											
TSHZ2	128553	broad.mit.edu	37	chr20	51889330	51889330	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taactcttggaggaactgctGtgtgccaggctctgttctga	12	9	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51889330	A	A	51889330	1	1	71	0	1	0	0	0	0	0	0	0	16749	1392	48	4		4	TSHZ2	20	51889330	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3722521	51889330	11136190	977	79419											
MC3R	4159	broad.mit.edu	37	chr20	54824146	54824147	+	Frame_Shift_Ins	INS	-	C	C													tctctgcagcctggcggtggINSccgacatgctggtaagtgtg							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54824147	C	C	54824146	7	5	71	1	0	1	1	0	0	0	0	0	9458	1203	42	0	249	0	MC3R	20	54824146	Frame_Shift_Ins	INS	-	TCGA-17-Z042-01A-01W-0746-08	2934816	54824146	8201374	978	79420											
C20orf107	388799	broad.mit.edu	37	chr20	55108276	55108276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatcatcacaatggccaGggtggcctcagctcagggcc	12	12	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55108276	T	T	55108276	1	4	71	0	1	0	0	0	0	0	0	0	2099	1015	35	2		2	C20orf107	20	55108276	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	284130	55108276	7917244	979	79421											
PCK1	5105	broad.mit.edu	37	chr20	56138808	56138808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttagacccaactcttGgtaacgattggactcaagcg	8	11	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138808	T	T	56138808	1	4	71	0	1	0	0	0	0	0	0	0	11675	1363	47	2		2	PCK1	20	56138808	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1030532	56138808	6886712	980	79422											
PHACTR3	116154	broad.mit.edu	37	chr20	58318094	58318094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagggtgagaggtcatcaCcttgggcccccaggagtcac	13	12	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58318094	A	A	58318094	1	1	71	0	1	0	0	0	0	0	0	0	11906	522	18	3		3	PHACTR3	20	58318094	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2179286	58318094	4707426	981	79423											
CDH26	60437	broad.mit.edu	37	chr20	58557897	58557897	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagacagacgtaacacAtaattaggataacagttatt	10	5	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58557897	G	G	58557897	1	3	71	0	1	0	0	0	0	0	0	0	3140	232	8	5		5	CDH26	20	58557897	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	239803	58557897	4467623	982	79424											
CDH26	60437	broad.mit.edu	37	chr20	58559833	58559833	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcgccttagtggagaaatAcgactctctggctgcttaga	11	9	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58559833	G	G	58559833	3	3	71	1	0	0	0	0	1	0	0	0	3140	381	14	5	703	5	CDH26	20	58559833	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	1936	58559833	4465687	983	79425											
DIDO1	11083	broad.mit.edu	37	chr20	61528110	61528110	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtccggcctgcctggcagcTgaagcaccactcgatggggt	15	13	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61528110	A	A	61528110	2	1	71	1	0	0	0	0	0	0	0	1	4562	1567	55	5		5	DIDO1	20	61528110	Silent	SNP	T	TCGA-17-Z042-01A-01W-0746-08	2968277	61528110	1497410	984	79426											
TPTE	7179	broad.mit.edu	37	chr21	10908932	10908932	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcaaagtaaaactgataCcaagaactaatcattccaaa	3	8	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10908932	A	A	10908932	1	1	71	0	1	0	0	0	0	0	0	0	16554	522	18	3		3	TPTE	21	10908932	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08		10908932	37220963	985	79427											
TPTE	7179	broad.mit.edu	37	chr21	10909714	10909714	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgaagtgtgctgccctcctCtctctggaattaataaaaaa	8	10	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10909714	A	A	10909714	1	1	71	0	1	0	0	0	0	0	0	0	16554	928	32	3		3	TPTE	21	10909714	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	782	10909714	37220181	986	79428											
TPTE	7179	broad.mit.edu	37	chr21	10942868	10942868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcaacccttgtcaatggGtcccaaaacacaaaatattt	4	10	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10942868	T	T	10942868	1	4	71	0	1	0	0	0	0	0	0	0	16554	1276	44	3		3	TPTE	21	10942868	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	33154	10942868	37187027	987	79429											
BAGE2	85319	broad.mit.edu	37	chr21	11039062	11039062	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtccatcaatccagtAgaaagttcagaatcttcttt	6	9	5	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11039062	G	G	11039062	1	3	71	0	1	0	0	0	0	0	0	0	1297	435	15	5		5	BAGE2	21	11039062	3'UTR	SNP	A	TCGA-17-Z042-01A-01W-0746-08	96194	11039062	37090833	988	79430											
BAGE2	85319	broad.mit.edu	37	chr21	11071480	11071480	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagccatataccttttgcAaagacttaaaaggaggacat	7	9	0	1	rs209020		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11071480	C	C	11071480	1	2	71	0	1	0	0	0	0	0	0	0	1297	145	5	5		5	BAGE2	21	11071480	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	32418	11071480	37058415	989	79431											
ITSN1	6453	broad.mit.edu	37	chr21	35208738	35208738	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgctcacccagccctgtctCctgcagtgtgccaggtgatt	10	16	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35208738	A	A	35208738	1	1	71	0	1	0	0	0	0	0	0	0	7996	870	30	3		3	ITSN1	21	35208738	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	24137258	35208738	12921157	990	79432											
CHAF1B	8208	broad.mit.edu	37	chr21	37758399	37758399	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaagtagaacggtgCccgagaaacgtttttcccct	10	10	0	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37758399	A	A	37758399	1	1	71	0	1	0	0	0	0	0	0	0	3343	754	26	3		3	CHAF1B	21	37758399	5'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2549661	37758399	10371496	991	79433											
CLDN14	23562	broad.mit.edu	37	chr21	37833374	37833374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctggtaggcaggtgcgGtgtttgcagtggtcgtggtg	21	5	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37833374	T	T	37833374	3	4	71	1	0	0	0	0	1	0	0	0	3506	1261	44	3	103	3	CLDN14	21	37833374	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	74975	37833374	10296521	992	79434											
KRTAP12-1	353332	broad.mit.edu	37	chr21	46101811	46101811	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctggtgcaggaaggctgGcagcacccagaggactggca	16	11	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46101811	T	T	46101811	4	4	71	1	0	0	0	0	0	1	0	0	8589	1195	42	3	66	3	KRTAP12-1	21	46101811	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8268437	46101811	2028084	993	79435											
XKR3	150165	broad.mit.edu	37	chr22	17280990	17280990	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatatttgaaagtttatcagGagaggaactcttaattttga	8	3	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17280990	T	T	17280990	1	4	71	0	1	0	0	0	0	0	0	0	17559	1189	41	3		3	XKR3	22	17280990	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08		17280990	34023576	994	79436											
MYO18B	84700	broad.mit.edu	37	chr22	26224651	26224651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtaagaggtgagcttGgttttgaaaccagttctgct	12	7	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26224651	T	T	26224651	1	4	71	0	1	0	0	0	0	0	0	0	10160	1363	47	2		2	MYO18B	22	26224651	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8943661	26224651	25079915	995	79437											
HPS4	89781	broad.mit.edu	37	chr22	26868948	26868948	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaagcatcttccttctctTtgagtccaagcccagaatcc	6	14	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26868948	A	A	26868948	1	1	71	0	1	0	0	0	0	0	0	0	7408	1856	64	5		5	HPS4	22	26868948	Intron	SNP	T	TCGA-17-Z042-01A-01W-0746-08	644297	26868948	24435618	996	79438											
GAS2L1	10634	broad.mit.edu	37	chr22	29706404	29706404	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggacttgacctctgacCcctaccctctctctctggcc	8	17	3	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29706404	T	T	29706404	1	4	71	0	1	0	0	0	0	0	0	0	6308	638	22	4		4	GAS2L1	22	29706404	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2837456	29706404	21598162	997	79439											
AP1B1	162	broad.mit.edu	37	chr22	29735017	29735017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcctgacagggtgcccaCgccactggtcaggtcaaaga	12	12	2	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29735017	A	A	29735017	3	1	71	1	0	0	0	0	1	0	0	0	733	536	19	3	756	3	AP1B1	22	29735017	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	28613	29735017	21569549	998	79440											
HORMAD2	150280	broad.mit.edu	37	chr22	30501328	30501328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatggcagctgggcctggGcttgctcacattcttggtca	14	11	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30501328	T	T	30501328	1	4	71	0	1	0	0	0	0	0	0	0	7354	1218	42	3		3	HORMAD2	22	30501328	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	766311	30501328	20803238	999	79441											
BPIL2	254240	broad.mit.edu	37	chr22	32841968	32841968	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggagagaaacagatcagcCcctcctgtgtcttggctgtt	11	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32841968	A	A	32841968	2	1	71	1	0	0	0	0	0	0	0	1	1501	610	22	2		2	BPIL2	22	32841968	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2340640	32841968	18462598	1000	79442											
CACNA1I	8911	broad.mit.edu	37	chr22	39996496	39996496	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctctgcaacctcaccctgtCccttgcttccctcctcctgc	5	21	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39996496	A	A	39996496	1	1	71	0	1	0	0	0	0	0	0	0	2572	870	30	3		3	CACNA1I	22	39996496	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	7154528	39996496	11308070	1001	79443											
EFCAB6	64800	broad.mit.edu	37	chr22	44063260	44063260	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgacagtaagaaggtttccCatcctcggttcactagctgg	10	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44063260	G	G	44063260	1	3	71	0	1	0	0	0	0	0	0	0	4979	609	21	4		4	EFCAB6	22	44063260	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4066764	44063260	7241306	1002	79444											
YY2	404281	broad.mit.edu	37	chrX	21874864	21874864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagacacaagaggaagtgGtgggctattgcgactcagac	14	8	1	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21874864	T	T	21874864	3	4	71	1	0	0	0	0	1	0	0	0	17636	1261	44	3	264	3	YY2	23	21874864	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08		21874864	133395696	1003	79445											
MAGEB10	139422	broad.mit.edu	37	chrX	27840394	27840394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagagccagagttgcagCcaaggctcgcgttagtgcca	13	12	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27840394	A	A	27840394	3	1	71	1	0	0	0	0	1	0	0	0	9265	739	26	3	973	3	MAGEB10	23	27840394	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	5965530	27840394	127430166	1004	79446											
NR0B1	190	broad.mit.edu	37	chrX	30326995	30326995	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctggccgtgcctcgggCgctgccggagccacgtgcgt	15	18	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30326995	T	T	30326995	2	4	71	1	0	0	0	0	0	0	0	1	10708	755	27	4		4	NR0B1	23	30326995	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2486601	30326995	124943565	1005	79447											
DMD	1756	broad.mit.edu	37	chrX	32591900	32591900	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgccatttgagaaggatgtCttgtaaaagaacccagcggt	11	7	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32591900	T	T	32591900	3	4	71	1	0	0	0	0	1	0	0	0	4620	913	32	4	9898	4	DMD	23	32591900	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2264905	32591900	122678660	1006	79448											
TMEM47	83604	broad.mit.edu	37	chrX	34657371	34657371	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatctgtttacctgctgcAaaaagcatgaccgcaacagg	9	10	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34657371	T	T	34657371	3	4	71	1	0	0	0	0	1	0	0	0	16294	127	5	5	193	5	TMEM47	23	34657371	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2065471	34657371	120613189	1007	79449											
CXorf59	286464	broad.mit.edu	37	chrX	36103457	36103457	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atataaaatgcaattctactCatcaacctcgccaccccaaa	2	14	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36103457	G	G	36103457	4	3	71	1	0	0	0	0	0	1	0	0	4148	838	29	4	457	4	CXorf59	23	36103457	Nonsense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1446086	36103457	119167103	1008	79450											
RP2	6102	broad.mit.edu	37	chrX	46713306	46713306	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagatgcagggctaagtatCttcaacaatacatggagtaa	9	6	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46713306	A	A	46713306	2	1	71	1	0	0	0	0	0	0	0	1	13645	903	32	3		3	RP2	23	46713306	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	10609849	46713306	108557254	1009	79451											
PQBP1	10084	broad.mit.edu	37	chrX	48755810	48755810	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgccgctgcccgttgcGctgcagacccgcttggccaa	12	16	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48755810	T	T	48755810	2	4	71	1	0	0	0	0	0	0	0	1	12518	1074	38	3		3	PQBP1	23	48755810	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	2042504	48755810	106514750	1010	79452											
DGKK	139189	broad.mit.edu	37	chrX	50118108	50118108	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagacaaagacaggggagttGttggttagtaagcatgcagc	14	5	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50118108	C	C	50118108	1	2	71	0	1	0	0	0	0	0	0	0	4512	1392	48	4		4	DGKK	23	50118108	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1362298	50118108	105152452	1011	79453											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	71	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-17-Z042-01A-01W-0746-08	3534739	53652847	101617713	1012	79454											
FAAH2	158584	broad.mit.edu	37	chrX	57405247	57405247	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catttatttttatttccttgGactcttatcctgacattcat	3	9	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57405247	T	T	57405247	1	4	71	0	1	0	0	0	0	0	0	0	5400	1189	41	3		3	FAAH2	23	57405247	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3752400	57405247	97865313	1013	79455											
HEPH	9843	broad.mit.edu	37	chrX	65427076	65427076	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaacaaggatgggctcctGggttccagatacaagaaagc	12	9	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65427076	T	T	65427076	2	4	71	1	0	0	0	0	0	0	0	1	7121	1335	47	2		2	HEPH	23	65427076	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	8021829	65427076	89843484	1014	79456											
ARR3	407	broad.mit.edu	37	chrX	69497335	69497335	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaccatccgccgcttccttCtgtcagctcagcccctacaa	6	18	3	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69497335	A	A	69497335	3	1	71	1	0	0	0	0	1	0	0	0	983	912	32	3	595	3	ARR3	23	69497335	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4070259	69497335	85773225	1015	79457											
ABCB7	22	broad.mit.edu	37	chrX	74273171	74273171	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtgcaaatatgtagtcCaaaacaacaaaaaaagaaaa	5	6	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74273171	A	A	74273171	1	1	71	0	1	0	0	0	0	0	0	0	46	609	21	2		2	ABCB7	23	74273171	3'UTR	SNP	C	TCGA-17-Z042-01A-01W-0746-08	4775836	74273171	80997389	1016	79458											
P2RY10	27334	broad.mit.edu	37	chrX	78216603	78216603	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaatgcagttgcgttgGtcgggatgattacagttgct	13	5	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78216603	C	C	78216603	3	2	71	1	0	0	0	0	1	0	0	0	11441	1261	44	4	588	4	P2RY10	23	78216603	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3943432	78216603	77053957	1017	79459											
PABPC5	140886	broad.mit.edu	37	chrX	90691132	90691132	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcaaattcccagaagagCgggcggctgaggtcagaacc	13	10	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90691132	A	A	90691132	2	1	71	1	0	0	0	0	0	0	0	1	11461	759	27	3		3	PABPC5	23	90691132	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	12474529	90691132	64579428	1018	79460											
NXF3	56000	broad.mit.edu	37	chrX	102338037	102338037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttcagaggctctgaaGttgaggtggtgaagggggca	19	4	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102338037	T	T	102338037	1	4	71	0	1	0	0	0	0	0	0	0	10880	1044	36	3		3	NXF3	23	102338037	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	11646905	102338037	52932523	1019	79461											
NRK	203447	broad.mit.edu	37	chrX	105132415	105132415	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcggcaccaactttgggtAtgtttttaattacactgttc	8	9	0	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105132415	T	T	105132415	1	4	71	0	1	0	0	0	0	0	0	0	10750	464	16	5		5	NRK	23	105132415	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	2794378	105132415	50138145	1020	79462											
RNF128	79589	broad.mit.edu	37	chrX	106016175	106016175	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgcaatcatgatcggcAatctgaaaggcacaaaaatt	8	7	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106016175	C	C	106016175	3	2	71	1	0	0	0	0	1	0	0	0	13547	130	5	5	933	5	RNF128	23	106016175	Missense_Mutation	SNP	A	TCGA-17-Z042-01A-01W-0746-08	883760	106016175	49254385	1021	79463											
COL4A6	1288	broad.mit.edu	37	chrX	107404923	107404923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgggcctgggagcccaCtggggccatctttaccgggg	17	12	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107404923	A	A	107404923	3	1	71	1	0	0	0	0	1	0	0	0	3727	565	20	3	829	3	COL4A6	23	107404923	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	1388748	107404923	47865637	1022	79464											
COL4A6	1288	broad.mit.edu	37	chrX	107553847	107553847	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagttagcaaagctccttcCagctggtcctcatcactttg	7	12	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107553847	G	G	107553847	1	3	71	0	1	0	0	0	0	0	0	0	3727	609	21	4		4	COL4A6	23	107553847	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	148924	107553847	47716713	1023	79465											
COL4A5	1287	broad.mit.edu	37	chrX	107802318	107802318	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagagggtttccaggtttgGaaggacacccaggattgcct	14	8	0	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107802318	T	T	107802318	4	4	71	1	0	0	0	0	0	1	0	0	3726	1175	41	3	176	3	COL4A5	23	107802318	Nonsense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	248471	107802318	47468242	1024	79466											
GUCY2F	2986	broad.mit.edu	37	chrX	108647757	108647757	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttagcaactcatttaactAttttgtgcttttaacaccaa	3	8	1	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108647757	G	G	108647757	1	3	71	0	1	0	0	0	0	0	0	0	6963	464	16	5		5	GUCY2F	23	108647757	Intron	SNP	A	TCGA-17-Z042-01A-01W-0746-08	845439	108647757	46622803	1025	79467											
PAK3	5063	broad.mit.edu	37	chrX	110406155	110406155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacaagagtacaaaaacaGcatctgagcctccattggcc	8	12	2	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110406155	T	T	110406155	3	4	71	1	0	0	0	0	1	0	0	0	11496	971	34	3	615	3	PAK3	23	110406155	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1758398	110406155	44864405	1026	79468											
ZCCHC16	340595	broad.mit.edu	37	chrX	111624806	111624807	+	Intron	INS	-	A	A													ggtatggaacagctatttacINSaaaaaagtagagagattgag							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111624807	A	A	111624806	6	5	71	0	1	1	1	0	0	0	0	0	17710	493	17	0		0	ZCCHC16	23	111624806	Intron	INS	-	TCGA-17-Z042-01A-01W-0746-08	1218651	111624806	43645754	1027	79469											
PLS3	5358	broad.mit.edu	37	chrX	114879350	114879350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttaacaggagaaactcGtgaagaaagaaccttccgta	8	8	1	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114879350	T	T	114879350	3	4	71	1	0	0	0	0	1	0	0	0	12203	1145	40	3	1231	3	PLS3	23	114879350	Missense_Mutation	SNP	G	TCGA-17-Z042-01A-01W-0746-08	3254544	114879350	40391210	1028	79470											
SEPT6	23157	broad.mit.edu	37	chrX	118774740	118774740	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgccaatgacagcaaaCggcaggtgggcctgaaaccg	14	11	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118774740	A	A	118774740	2	1	71	1	0	0	0	0	0	0	0	1	14181	523	19	3		3	SEPT6	23	118774740	Silent	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3895390	118774740	36495820	1029	79471											
OCRL	4952	broad.mit.edu	37	chrX	128692016	128692016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatggtgatgtagattaaaGctgatgtcagacacattctc	9	6	2	4			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128692016	T	T	128692016	1	4	71	0	1	0	0	0	0	0	0	0	10918	986	34	3		3	OCRL	23	128692016	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9917276	128692016	26578544	1030	79472											
IGSF1	3547	broad.mit.edu	37	chrX	130410317	130410317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagacacaatatatgtttGttgttaaaaattagaaaata	6	2	0	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130410317	T	T	130410317	1	4	71	0	1	0	0	0	0	0	0	0	7666	1392	48	3		3	IGSF1	23	130410317	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1718301	130410317	24860243	1031	79473											
IGSF1	3547	broad.mit.edu	37	chrX	130419493	130419493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaggatagtactgtctaGggagcagcagaggagagctc	15	7	1	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130419493	T	T	130419493	1	4	71	0	1	0	0	0	0	0	0	0	7666	1015	35	2		2	IGSF1	23	130419493	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	9176	130419493	24851067	1032	79474											
FRMD7	90167	broad.mit.edu	37	chrX	131264182	131264182	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaactgcagcttcctggGgagcagtttcacttccacag	11	11	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131264182	T	T	131264182	1	4	71	0	1	0	0	0	0	0	0	0	6115	1247	43	2		2	FRMD7	23	131264182	5'Flank	SNP	G	TCGA-17-Z042-01A-01W-0746-08	844689	131264182	24006378	1033	79475											
GPR112	139378	broad.mit.edu	37	chrX	135427080	135427080	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacaacatctttattttcAactattgagtcaacatctat	3	8	4	2			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135427080	C	C	135427080	2	2	71	1	0	0	0	0	0	0	0	1	6694	117	5	5		5	GPR112	23	135427080	Silent	SNP	A	TCGA-17-Z042-01A-01W-0746-08	4162898	135427080	19843480	1034	79476											
ATP11C	286410	broad.mit.edu	37	chrX	138864752	138864752	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattcatgtttgtctcaaTatcatcgaaaactttttcca	3	8	3	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138864752	C	C	138864752	3	2	71	1	0	0	0	0	1	0	0	0	1125	1406	49	5	1598	5	ATP11C	23	138864752	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	3437672	138864752	16405808	1035	79477											
MAGEC2	51438	broad.mit.edu	37	chrX	141291494	141291494	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaggactctgggaaggacCctgtggaggaccctgtggag	17	9	1	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141291494	G	G	141291494	3	3	71	1	0	0	0	0	1	0	0	0	9273	623	22	4	845	4	MAGEC2	23	141291494	Missense_Mutation	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2426742	141291494	13979066	1036	79478											
SPANXN3	139067	broad.mit.edu	37	chrX	142596806	142596806	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccttcagataagtctacGccttcgtcctcctccttttg	6	14	2	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142596806	A	A	142596806	2	1	71	1	0	0	0	0	0	0	0	1	15108	1074	38	4		4	SPANXN3	23	142596806	Silent	SNP	G	TCGA-17-Z042-01A-01W-0746-08	1305312	142596806	12673754	1037	79479											
FMR1	2332	broad.mit.edu	37	chrX	147003435	147003435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcacaagttaatttaacGttttttcttacacaggcatt	5	8	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147003435	T	T	147003435	1	4	71	0	1	0	0	0	0	0	0	0	6018	1160	40	3		3	FMR1	23	147003435	Intron	SNP	G	TCGA-17-Z042-01A-01W-0746-08	4406629	147003435	8267125	1038	79480											
PASD1	139135	broad.mit.edu	37	chrX	150839315	150839315	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcaggctaaatgatctcCgtggtccatttcttatctag	8	9	4	1			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150839315	T	T	150839315	1	4	71	0	1	0	0	0	0	0	0	0	11565	667	23	4		4	PASD1	23	150839315	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	3835880	150839315	4431245	1039	79481											
L1CAM	3897	broad.mit.edu	37	chrX	153132753	153132753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacctctctaagccctcCcttcacagcccggagcccct	7	20	2	0			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153132753	A	A	153132753	1	1	71	0	1	0	0	0	0	0	0	0	8660	638	22	2		2	L1CAM	23	153132753	Intron	SNP	C	TCGA-17-Z042-01A-01W-0746-08	2293438	153132753	2137807	1040	79482											
TKTL1	8277	broad.mit.edu	37	chrX	153539221	153539221	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcatgagtgatggcgagTcctcagaaggctctgtctgg	14	10	4	3			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153539221	C	C	153539221	3	2	71	1	0	0	0	0	1	0	0	0	16058	1667	58	5	399	5	TKTL1	23	153539221	Missense_Mutation	SNP	T	TCGA-17-Z042-01A-01W-0746-08	406468	153539221	1731339	1041	79483											
USP9Y	8287	broad.mit.edu	37	chrY	14959240	14959240	+	Frame_Shift_Del	DEL	G	-	-													tttactgattgaggactcctGgcagactcacaggtgaatac							TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14959240	-	-	14959240	7	5	71	1	0	1	0	1	0	0	0	0	17218	1357	47	0	7210	0	USP9Y	24	14959240	Frame_Shift_Del	DEL	G	TCGA-17-Z042-01A-01W-0746-08		14959240	44414326	1042	79484											
CHD5	26038	broad.mit.edu	37	chr1	6196750	6196750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgggcggcccctcgccCcgggaagctctggggtctgg	17	15	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6196750	A	A	6196750	1	1	72	0	1	0	0	0	0	0	0	0	3359	638	22	2		2	CHD5	1	6196750	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		6196750	243053871	1	79485											
VPS13D	55187	broad.mit.edu	37	chr1	12566973	12566973	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaaagctgtttacttcctGaaaagtggagactacgtgga	10	8	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12566973	A	A	12566973	2	1	72	1	0	0	0	0	0	0	0	1	17319	1277	45	4		4	VPS13D	1	12566973	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6370223	12566973	236683648	2	79486											
VPS13D	55187	broad.mit.edu	37	chr1	12567176	12567176	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggctgttctcaggctcctGaggggcggggccagggcctc	17	13	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12567176	A	A	12567176	1	1	72	0	1	0	0	0	0	0	0	0	17319	1305	45	4		4	VPS13D	1	12567176	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	203	12567176	236683445	3	79487											
PRAMEF5	343068	broad.mit.edu	37	chr1	13051786	13051786	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcacacagctgtagtcctAgctactcaggaggctgaggt	12	11	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13051786	C	C	13051786	1	2	72	0	1	0	0	0	0	0	0	0	12542	435	15	5		5	PRAMEF5	1	13051786	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	484610	13051786	236198835	4	79488											
PADI3	51702	broad.mit.edu	37	chr1	17607145	17607145	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggcaaggtgtccccaactCtggccctcccctgcccccag	9	20	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17607145	T	T	17607145	1	4	72	0	1	0	0	0	0	0	0	0	11473	928	32	4		4	PADI3	1	17607145	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4555359	17607145	231643476	5	79489											
MRPS15	64960	broad.mit.edu	37	chr1	36921756	36921756	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatcccagtccctgagtgGggccaagcaaagccgcaatt	10	14	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36921756	A	A	36921756	1	1	72	0	1	0	0	0	0	0	0	0	9919	1247	43	4		4	MRPS15	1	36921756	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	19314611	36921756	212328865	6	79490											
GRIK3	2899	broad.mit.edu	37	chr1	37319244	37319244	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccatcctctttcaggctgAtgatgtccagatcaaaatcc	8	12	3	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37319244	T	T	37319244	3	4	72	1	0	0	0	0	1	0	0	0	6841	333	12	5	1611	5	GRIK3	1	37319244	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	397488	37319244	211931377	7	79491											
WDR65	149465	broad.mit.edu	37	chr1	43652305	43652305	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaaaactctgaaagcctaagg					rs1976284		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43652305	-	-	43652305	6	5	72	0	1	1	0	1	0	0	0	0	17443	957	33	0		0	WDR65	1	43652305	Intron	DEL	G	TCGA-17-Z043-01A-01W-0746-08	6333061	43652305	205598316	8	79492											
SLC5A9	200010	broad.mit.edu	37	chr1	48696360	48696360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcctgctggtggtgactgCcgtctacaccattgcaggta	12	11	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48696360	T	T	48696360	3	4	72	1	0	0	0	0	1	0	0	0	14786	739	26	4	690	4	SLC5A9	1	48696360	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5044055	48696360	200554261	9	79493											
USP24	23358	broad.mit.edu	37	chr1	55563844	55563844	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctaagcttgaacacagaaCtacatttttaatctgggagt	7	8	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55563844	G	G	55563844	1	3	72	0	1	0	0	0	0	0	0	0	17181	580	20	4		4	USP24	1	55563844	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6867484	55563844	193686777	10	79494											
ROR1	4919	broad.mit.edu	37	chr1	64515390	64515390	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgaccctcgatgaaccaaTgaataacatcaccacgtctc	5	15	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64515390	A	A	64515390	3	1	72	1	0	0	0	0	1	0	0	0	13637	1464	51	5	201	5	ROR1	1	64515390	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	8951546	64515390	184735231	11	79495											
C1orf141	400757	broad.mit.edu	37	chr1	67561035	67561035	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttactgacctatacttActtaattgataatttctgac	3	8	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67561035	T	T	67561035	3	4	72	1	0	0	0	0	1	0	0	0	2021	388	14	5	724	5	C1orf141	1	67561035	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3045645	67561035	181689586	12	79496											
LRRC7	57554	broad.mit.edu	37	chr1	70478656	70478656	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attttcttttgttacctacaGattggaagttgtaagaatgt	8	4	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70478656	C	C	70478656	5	2	72	1	0	0	0	0	0	0	1	0	9107	956	33	4	1062	4	LRRC7	1	70478656	Splice_Site	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2917621	70478656	178771965	13	79497											
C1orf173	127254	broad.mit.edu	37	chr1	75039299	75039299	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgatatcaagaggccatTgtattatatataaaacactt	6	5	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75039299	A	A	75039299	1	1	72	0	1	0	0	0	0	0	0	0	2034	1827	63	5		5	C1orf173	1	75039299	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4560643	75039299	174211322	14	79498											
C1orf173	127254	broad.mit.edu	37	chr1	75078310	75078310	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatttgtttccatacttgTagcaaggagatgatctctca	8	8	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75078310	C	C	75078310	3	2	72	1	0	0	0	0	1	0	0	0	2034	1638	57	5	3432	5	C1orf173	1	75078310	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	39011	75078310	174172311	15	79499											
LPHN2	23266	broad.mit.edu	37	chr1	82409459	82409459	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcctgcccaaggtaagCgtgtttacttgctaatgctt	9	10	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82409459	T	T	82409459	1	4	72	0	1	0	0	0	0	0	0	0	9003	783	27	4		4	LPHN2	1	82409459	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	7331149	82409459	166841162	16	79500											
PRKACB	5567	broad.mit.edu	37	chr1	84668410	84668410	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggcattaggagtgctaatCtatgaaatggcagctggcta	13	6	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84668410	G	G	84668410	3	3	72	1	0	0	0	0	1	0	0	0	12604	903	32	4	908	4	PRKACB	1	84668410	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2258951	84668410	164582211	17	79501											
DNASE2B	58511	broad.mit.edu	37	chr1	84880433	84880433	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaatcgctggacatgtattgGagacctaaatcggagtccac	10	9	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84880433	C	C	84880433	3	2	72	1	0	0	0	0	1	0	0	0	4705	1174	41	4	990	4	DNASE2B	1	84880433	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	212023	84880433	164370188	18	79502											
CYR61	3491	broad.mit.edu	37	chr1	86047826	86047826	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgaggagtgggtctgtgacGaggatagtatcaaggacccc	16	8	2	1	rs146738107		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86047826	A	A	86047826	3	1	72	1	0	0	0	0	1	0	0	0	4232	1059	37	4	503	4	CYR61	1	86047826	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1167393	86047826	163202795	19	79503											
AGL	178	broad.mit.edu	37	chr1	100349809	100349809	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacatattcaggtatttggGactctcatcttactactgtg	8	8	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100349809	T	T	100349809	1	4	72	0	1	0	0	0	0	0	0	0	384	1189	41	3		3	AGL	1	100349809	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	14301983	100349809	148900812	20	79504											
PRMT6	55170	broad.mit.edu	37	chr1	107600087	107600087	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggacgtgctggcccggccGcagcgctttgctcagctaga	15	13	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107600087	T	T	107600087	2	4	72	1	0	0	0	0	0	0	0	1	12646	1074	38	3		3	PRMT6	1	107600087	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	7250278	107600087	141650534	21	79505											
SLC16A4	9122	broad.mit.edu	37	chr1	110925346	110925346	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagcgttacatatcagtaaAtgaaccttaattttagaaac	5	7	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110925346	G	G	110925346	1	3	72	0	1	0	0	0	0	0	0	0	14523	116	4	5		5	SLC16A4	1	110925346	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3325259	110925346	138325275	22	79506											
DENND2C	163259	broad.mit.edu	37	chr1	115151428	115151428	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaattcaataagatcccgcTccaaggtctggtagtgagga	11	8	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115151428	A	A	115151428	3	1	72	1	0	0	0	0	1	0	0	0	4470	1551	54	5	1398	5	DENND2C	1	115151428	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4226082	115151428	134099193	23	79507											
SLC22A15	55356	broad.mit.edu	37	chr1	116563540	116563540	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgcagctctggactgggtGagcagctccagaaaatttta	11	9	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116563540	C	C	116563540	1	2	72	0	1	0	0	0	0	0	0	0	14559	1305	45	4		4	SLC22A15	1	116563540	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1412112	116563540	132687081	24	79508											
WDR3	10885	broad.mit.edu	37	chr1	118482023	118482023	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acattttactacggtgtaacAgacttttggaatgtcatatt	7	6	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118482023	T	T	118482023	1	4	72	0	1	0	0	0	0	0	0	0	17412	203	7	5		5	WDR3	1	118482023	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1918483	118482023	130768598	25	79509											
SPAG17	200162	broad.mit.edu	37	chr1	118693248	118693248	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacaagtgtatttatttcaTtaatctgtaagaaaattaaa	4	4	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118693248	C	C	118693248	3	2	72	1	0	0	0	0	1	0	0	0	15095	1493	52	5	6622	5	SPAG17	1	118693248	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	211225	118693248	130557373	26	79510											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857562	144857562	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaacaaaaggttgtttgcaTtaatcactttccatcatcag	5	9	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144857562	A	A	144857562	1	1	72	0	1	0	0	0	0	0	0	0	11737	1508	52	5		5	PDE4DIP	1	144857562	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	26164314	144857562	104393059	27	79511											
PDE4DIP	9659	broad.mit.edu	37	chr1	144916439	144916439	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaaatcccagtgaaagtCaatgacttgcccaggcacag	8	10	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144916439	T	T	144916439	1	4	72	0	1	0	0	0	0	0	0	0	11737	841	29	4		4	PDE4DIP	1	144916439	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	58877	144916439	104334182	28	79512											
PDE4DIP	9659	broad.mit.edu	37	chr1	145022584	145022584	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacggactcagtgactaatGttttaaagggggactgtcta	12	6	2	2	rs61811001		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145022584	A	A	145022584	1	1	72	0	1	0	0	0	0	0	0	0	11737	1392	48	4		4	PDE4DIP	1	145022584	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	106145	145022584	104228037	29	79513											
GPR89B	51463	broad.mit.edu	37	chr1	147400566	147400566	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacctgggagaaggcagAccgtgtgagggggcctgtgg	19	9	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147400566	G	G	147400566	1	3	72	0	1	0	0	0	0	0	0	0	6784	290	10	5		5	GPR89B	1	147400566	5'UTR	SNP	A	TCGA-17-Z043-01A-01W-0746-08	2377982	147400566	101850055	30	79514											
OTUD7B	56957	broad.mit.edu	37	chr1	149943154	149943154	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgttcaaaatcactgagGgcggcattcacatcccaatt	8	11	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149943154	A	A	149943154	2	1	72	1	0	0	0	0	0	0	0	1	11413	1219	43	4		4	OTUD7B	1	149943154	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2542588	149943154	99307467	31	79515											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150530998	150530998	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccggcaggttcgctgtgTtgggaacaatggtgatgaag	16	6	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150530998	C	C	150530998	3	2	72	1	0	0	0	0	1	0	0	0	277	1725	60	5	2482	5	ADAMTSL4	1	150530998	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	587844	150530998	98719623	32	79516											
LASS2	29956	broad.mit.edu	37	chr1	150938672	150938673	+	Frame_Shift_Ins	INS	-	A	A													ggatggggtggccattggctINSaggggccggctctttgctcc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150938673	A	A	150938672	7	5	72	1	0	1	1	0	0	0	0	0	8711	1509	53	0	51	0	LASS2	1	150938672	Frame_Shift_Ins	INS	-	TCGA-17-Z043-01A-01W-0746-08	407674	150938672	98311949	33	79517											
FLG	2312	broad.mit.edu	37	chr1	152283678	152283678	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgagtgcctggagccGtctcctgattgtttgtcctt	11	12	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152283678	A	A	152283678	2	1	72	1	0	0	0	0	0	0	0	1	5979	1136	40	4		4	FLG	1	152283678	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1345006	152283678	96966943	34	79518											
ASH1L	55870	broad.mit.edu	37	chr1	155308253	155308253	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaagggtaggaggcctcAagatggcttgagatcctgga	16	6	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155308253	G	G	155308253	1	3	72	0	1	0	0	0	0	0	0	0	1045	145	5	5		5	ASH1L	1	155308253	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3024575	155308253	93942368	35	79519											
FCRL1	115350	broad.mit.edu	37	chr1	157771907	157771907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctctcagggcctcacaGtgaagctccagcacatcctc	9	16	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157771907	T	T	157771907	3	4	72	1	0	0	0	0	1	0	0	0	5851	1020	36	3	699	3	FCRL1	1	157771907	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2463654	157771907	91478714	36	79520											
CD1D	912	broad.mit.edu	37	chr1	158146789	158146789	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taatcctttgaagtatacgaGaggtccttaggattcagatt	9	6	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158146789	T	T	158146789	1	4	72	0	1	0	0	0	0	0	0	0	3007	957	33	3		3	CD1D	1	158146789	5'Flank	SNP	G	TCGA-17-Z043-01A-01W-0746-08	374882	158146789	91103832	37	79521											
ATP1A4	480	broad.mit.edu	37	chr1	160143392	160143392	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatcatggtaacaggagatCatcccattacagctaaggcc	9	10	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160143392	A	A	160143392	3	1	72	1	0	0	0	0	1	0	0	0	1135	826	29	3	1926	3	ATP1A4	1	160143392	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1996603	160143392	89107229	38	79522											
NDUFS2	4720	broad.mit.edu	37	chr1	161182313	161182313	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggggtgttggaaagggGccagtggctggggaggagta	23	3	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161182313	C	C	161182313	1	2	72	0	1	0	0	0	0	0	0	0	10387	1218	42	4		4	NDUFS2	1	161182313	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1038921	161182313	88068308	39	79523											
HSD17B7	51478	broad.mit.edu	37	chr1	162773268	162773268	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtacagcattgaccaatttGacatatggaattctgcctcc	8	10	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162773268	T	T	162773268	3	4	72	1	0	0	0	0	1	0	0	0	7455	1281	45	3	712	3	HSD17B7	1	162773268	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1590955	162773268	86477353	40	79524											
RXRG	6258	broad.mit.edu	37	chr1	165398014	165398014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgcaagtgctcctgagGgtgggcccatggcagaggtg	18	10	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165398014	T	T	165398014	3	4	72	1	0	0	0	0	1	0	0	0	13876	1232	43	2	1188	2	RXRG	1	165398014	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2624746	165398014	83852607	41	79525											
CD247	919	broad.mit.edu	37	chr1	167489364	167489364	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgaaatccctcggagtAtccagttttaacagcaggcc	10	10	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167489364	T	T	167489364	1	4	72	0	1	0	0	0	0	0	0	0	3018	464	16	5		5	CD247	1	167489364	5'Flank	SNP	A	TCGA-17-Z043-01A-01W-0746-08	2091350	167489364	81761257	42	79526											
SELL	6402	broad.mit.edu	37	chr1	169677568	169677568	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactccctacctgtgtaacaGagggctgcctttagtttgtg	10	11	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169677568	C	C	169677568	2	2	72	1	0	0	0	0	0	0	0	1	14129	929	33	4		4	SELL	1	169677568	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2188204	169677568	79573053	43	79527											
SELL	6402	broad.mit.edu	37	chr1	169677935	169677935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtcggttccatgatgtGccaggaaatctgcaagacat	11	9	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169677935	T	T	169677935	3	4	72	1	0	0	0	0	1	0	0	0	14129	1319	46	3	1051	3	SELL	1	169677935	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	367	169677935	79572686	44	79528											
TNN	63923	broad.mit.edu	37	chr1	175104954	175104954	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatgtctgtttggagggtcaGagtgaagtattcatcttcct	11	6	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175104954	C	C	175104954	1	2	72	0	1	0	0	0	0	0	0	0	16446	957	33	4		4	TNN	1	175104954	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5427019	175104954	74145667	45	79529											
PAPPA2	60676	broad.mit.edu	37	chr1	176708998	176708998	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtctgggatcttgcctAcatcatacatctaggttttg	9	8	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176708998	G	G	176708998	1	3	72	0	1	0	0	0	0	0	0	0	11527	406	14	5		5	PAPPA2	1	176708998	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1604044	176708998	72541623	46	79530											
PAPPA2	60676	broad.mit.edu	37	chr1	176766050	176766050	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcccactcccttcctcccTctattttcttttcttccttt	0	19	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176766050	A	A	176766050	1	1	72	0	1	0	0	0	0	0	0	0	11527	1566	54	5		5	PAPPA2	1	176766050	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	57052	176766050	72484571	47	79531											
ASTN1	460	broad.mit.edu	37	chr1	176913186	176913186	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagaccttcatttctgagtGttcaggtgaacctgactcct	9	10	3	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176913186	A	A	176913186	1	1	72	0	1	0	0	0	0	0	0	0	1068	1392	48	4		4	ASTN1	1	176913186	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	147136	176913186	72337435	48	79532											
ASTN1	460	broad.mit.edu	37	chr1	176983779	176983779	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggaatggtataaatatgGaaaggcatagtgacattttt	10	3	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176983779	T	T	176983779	1	4	72	0	1	0	0	0	0	0	0	0	1068	1189	41	3		3	ASTN1	1	176983779	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	70593	176983779	72266842	49	79533											
FAM163A	148753	broad.mit.edu	37	chr1	179727440	179727440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattcctgatgccttgttaGttgaaaaggtcatatggggt	13	5	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179727440	T	T	179727440	1	4	72	0	1	0	0	0	0	0	0	0	5522	1044	36	3		3	FAM163A	1	179727440	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2743661	179727440	69523181	50	79534											
KIAA1614	57710	broad.mit.edu	37	chr1	180886045	180886045	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtctttgtccccaggaCggccctgctgggtgagcgct	16	12	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180886045	T	T	180886045	3	4	72	1	0	0	0	0	1	0	0	0	8318	536	19	4	812	4	KIAA1614	1	180886045	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1158605	180886045	68364576	51	79535											
CACNA1E	777	broad.mit.edu	37	chr1	181700418	181700418	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggttacgtgtgggcgtggGacaatgtgtcattgtccttg	16	6	1	0	rs111620668		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181700418	A	A	181700418	1	1	72	0	1	0	0	0	0	0	0	0	2568	1189	41	4		4	CACNA1E	1	181700418	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	814373	181700418	67550203	52	79536											
CACNA1E	777	broad.mit.edu	37	chr1	181721126	181721126	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttttcgcaggatgtcccTggagtcaaatctgactcagt	9	10	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181721126	A	A	181721126	1	1	72	0	1	0	0	0	0	0	0	0	2568	1595	55	5		5	CACNA1E	1	181721126	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	20708	181721126	67529495	53	79537											
NR5A2	2494	broad.mit.edu	37	chr1	200017310	200017310	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccaacagctgtaagggcCgaccgaatgcgtggaggaag	14	12	0	0	rs151039307		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200017310	T	T	200017310	2	4	72	1	0	0	0	0	0	0	0	1	10731	639	23	4		4	NR5A2	1	200017310	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	18296184	200017310	49233311	54	79538											
C1orf106	55765	broad.mit.edu	37	chr1	200880665	200880666	+	Missense_Mutation	DNP	GC	AA	AA													actcactacacggtgacagtGccagattcctgctttcccgc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	200880666	AA	AA	200880665	3	1	72	1	0	0	0	0	1	0	0	0	2000	1306	46	4	1333	4	C1orf106	1	200880665	Missense_Mutation	DNP	GC	TCGA-17-Z043-01A-01W-0746-08	863355	200880665	48369956	55	79539											
PPP1R12B	4660	broad.mit.edu	37	chr1	202509228	202509228	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcccagctttgtgtgaaGaatccagtggttgagtgtct	11	7	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202509228	T	T	202509228	1	4	72	0	1	0	0	0	0	0	0	0	12456	957	33	3		3	PPP1R12B	1	202509228	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1628563	202509228	46741393	56	79540											
PLEKHA6	22874	broad.mit.edu	37	chr1	204236792	204236792	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcctggccctagctgcggCtctgctgttaatgcacggca	11	14	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204236792	T	T	204236792	1	4	72	0	1	0	0	0	0	0	0	0	12155	812	28	4		4	PLEKHA6	1	204236792	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1727564	204236792	45013829	57	79541											
TAF1A	9015	broad.mit.edu	37	chr1	222742739	222742739	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtttatctcagtgtacTgtacattattgaaattttct	5	7	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	222742739	C	C	222742739	1	2	72	0	1	0	0	0	0	0	0	0	15638	1595	55	5		5	TAF1A	1	222742739	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	18505947	222742739	26507882	58	79542											
MIA3	375056	broad.mit.edu	37	chr1	222805568	222805568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcagaacttaatgtgcaGgttcctgaagaacccaccca	8	12	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222805568	T	T	222805568	3	4	72	1	0	0	0	0	1	0	0	0	9658	991	35	2	3249	2	MIA3	1	222805568	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	62829	222805568	26445053	59	79543											
DISP1	84976	broad.mit.edu	37	chr1	223156534	223156534	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattttctccgtattttgctGttcttttcactttcctcatt	3	10	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223156534	C	C	223156534	1	2	72	0	1	0	0	0	0	0	0	0	4579	1392	48	4		4	DISP1	1	223156534	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	350966	223156534	26094087	60	79544											
OBSCN	84033	broad.mit.edu	37	chr1	228509046	228509046	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctctgtgcccacaggTtggggccccagcagccccct	12	17	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228509046	C	C	228509046	3	2	72	1	0	0	0	0	1	0	0	0	10907	1739	60	5	14718	5	OBSCN	1	228509046	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	5352512	228509046	20741575	61	79545											
COG2	22796	broad.mit.edu	37	chr1	230825682	230825682	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgttaatagtatccttttggActtgagttctgggtaactta	9	6	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230825682	G	G	230825682	1	3	72	0	1	0	0	0	0	0	0	0	3690	290	10	5		5	COG2	1	230825682	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	2316636	230825682	18424939	62	79546											
KIAA1804	84451	broad.mit.edu	37	chr1	233498129	233498129	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaccaggaaagagataGggaagtaactttgtaaaaca	10	5	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233498129	A	A	233498129	1	1	72	0	1	0	0	0	0	0	0	0	8329	1015	35	4		4	KIAA1804	1	233498129	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2672447	233498129	15752492	63	79547											
RYR2	6262	broad.mit.edu	37	chr1	237837542	237837542	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtacacataccctaagTacacactcttttcacaagag	4	11	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237837542	A	A	237837542	1	1	72	0	1	0	0	0	0	0	0	0	13880	1653	57	5		5	RYR2	1	237837542	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4339413	237837542	11413079	64	79548											
RYR2	6262	broad.mit.edu	37	chr1	237947057	237947057	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacgtggagatgattctcaaAttttttgacatgttcttaaa	7	5	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947057	T	T	237947057	3	4	72	1	0	0	0	0	1	0	0	0	13880	98	4	5	12403	5	RYR2	1	237947057	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	109515	237947057	11303564	65	79549											
OPN3	23596	broad.mit.edu	37	chr1	241767797	241767797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaatggccctccaggccCaggaaaaattgatcactctg	10	11	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241767797	A	A	241767797	3	1	72	1	0	0	0	0	1	0	0	0	10975	595	21	2	762	2	OPN3	1	241767797	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3820740	241767797	7482824	66	79550											
OR11L1	391189	broad.mit.edu	37	chr1	248004584	248004585	+	Missense_Mutation	DNP	GG	TT	TT													aaaaaacaaatgcacagcacGgcaattgacaggatgaagat							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	248004585	TT	TT	248004584	3	4	72	1	0	0	0	0	1	0	0	0	11024	1103	39	1	357	1	OR11L1	1	248004584	Missense_Mutation	DNP	GG	TCGA-17-Z043-01A-01W-0746-08	6236787	248004584	1246037	67	79551											
OR2L13	284521	broad.mit.edu	37	chr1	248138043	248138044	+	Intron	DNP	CA	AT	AT													gaaggattgtaggaatgcccCatggaaaaatacaatcaaac							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	248138044	AT	AT	248138043	1	1	72	0	1	0	0	0	0	0	0	0	11100	609	21	2		2	OR2L13	1	248138043	Intron	DNP	CA	TCGA-17-Z043-01A-01W-0746-08	133459	248138043	1112578	68	79552											
SH3BP5L	80851	broad.mit.edu	37	chr1	249106452	249106452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtggggaggcagaccccCgcggcgccgtgcgtgaatct	19	12	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249106452	A	A	249106452	3	1	72	1	0	0	0	0	1	0	0	0	14361	652	23	1	356	1	SH3BP5L	1	249106452	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	968409	249106452	144169	69	79553											
TSSC1	7260	broad.mit.edu	37	chr2	3353478	3353478	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgctgtgagatggggacagGgagcatgctgggagatgggg	21	5	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3353478	A	A	3353478	1	1	72	0	1	0	0	0	0	0	0	0	16791	1247	43	4		4	TSSC1	2	3353478	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08		3353478	239845895	70	79554											
TRIM54	57159	broad.mit.edu	37	chr2	27521582	27521582	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctagtggagaacattatcGacatttacaagcaggagtca	10	7	1	1	rs140219939		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27521582	A	A	27521582	3	1	72	1	0	0	0	0	1	0	0	0	16653	1058	37	4	322	4	TRIM54	2	27521582	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	24168104	27521582	215677791	71	79555											
ALK	238	broad.mit.edu	37	chr2	29940451	29940452	+	Missense_Mutation	DNP	GC	AA	AA													aacatatacttaccatatcgGctgcgatgagacaggaaagg							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29940452	AA	AA	29940451	3	1	72	1	0	0	0	0	1	0	0	0	525	1194	42	4	4194	4	ALK	2	29940451	Missense_Mutation	DNP	GC	TCGA-17-Z043-01A-01W-0746-08	2418869	29940451	213258922	72	79556											
XDH	7498	broad.mit.edu	37	chr2	31628671	31628671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgctctttcctccacaCctcaaggccaccccaccagt	5	20	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31628671	A	A	31628671	1	1	72	0	1	0	0	0	0	0	0	0	17553	522	18	3		3	XDH	2	31628671	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1688220	31628671	211570702	73	79557											
PLEKHH2	130271	broad.mit.edu	37	chr2	43986227	43986227	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtacatagttgaccagAtttaccccagacttagtatc	7	9	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43986227	G	G	43986227	1	3	72	0	1	0	0	0	0	0	0	0	12172	348	12	5		5	PLEKHH2	2	43986227	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	12357556	43986227	199213146	74	79558											
PRKCE	5581	broad.mit.edu	37	chr2	46069896	46069896	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaactgcctccagatgttTgccaagcatcccctgtgtag	8	13	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46069896	C	C	46069896	1	2	72	0	1	0	0	0	0	0	0	0	12617	1827	63	5		5	PRKCE	2	46069896	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2083669	46069896	197129477	75	79559											
LHCGR	3973	broad.mit.edu	37	chr2	48915565	48915565	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttctagagtgatgacggtGagggtgtagacagaaagttc	14	5	1	6			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48915565	T	T	48915565	2	4	72	1	0	0	0	0	0	0	0	1	8834	1277	45	3		3	LHCGR	2	48915565	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2845669	48915565	194283808	76	79560											
NRXN1	9378	broad.mit.edu	37	chr2	50724388	50724388	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccttatgagccagtatgTtcttcttagtgtatattttt	6	8	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50724388	G	G	50724388	1	3	72	0	1	0	0	0	0	0	0	0	10760	1740	60	5		5	NRXN1	2	50724388	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1808823	50724388	192474985	77	79561											
NRXN1	9378	broad.mit.edu	37	chr2	50755671	50755671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcatgagttttataaaCacatttctcttgctctctct	5	10	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50755671	A	A	50755671	1	1	72	0	1	0	0	0	0	0	0	0	10760	493	17	3		3	NRXN1	2	50755671	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	31283	50755671	192443702	78	79562											
CLEC4F	165530	broad.mit.edu	37	chr2	71038391	71038391	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcacaattgtcttaaatGtcatacttccatacaccttc	4	11	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71038391	T	T	71038391	1	4	72	0	1	0	0	0	0	0	0	0	3548	1392	48	3		3	CLEC4F	2	71038391	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	20282720	71038391	172160982	79	79563											
DYSF	8291	broad.mit.edu	37	chr2	71766214	71766214	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgtgtaaccgaggccGcatacttcctgggtgggctg	15	9	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71766214	A	A	71766214	1	1	72	0	1	0	0	0	0	0	0	0	4899	1102	38	4		4	DYSF	2	71766214	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	727823	71766214	171433159	80	79564											
CCDC142	84865	broad.mit.edu	37	chr2	74708398	74708398	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctgggctctcgaagggcatCcaagagaggaggaaagagct	15	9	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74708398	G	G	74708398	3	3	72	1	0	0	0	0	1	0	0	0	2802	855	30	4	1049	4	CCDC142	2	74708398	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2942184	74708398	168490975	81	79565											
LRRTM4	80059	broad.mit.edu	37	chr2	77563483	77563483	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcacatttttgccacatcCtatgagaggcttgcactttt	9	10	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77563483	G	G	77563483	1	3	72	0	1	0	0	0	0	0	0	0	9129	696	24	4		4	LRRTM4	2	77563483	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2855085	77563483	165635890	82	79566											
CTNNA2	1496	broad.mit.edu	37	chr2	80364061	80364062	+	Intron	DNP	GG	CT	CT													cacaactgctgctgcatgaaGgtggcctcttcattgcctcc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	80364062	CT	CT	80364061	1	2	72	0	1	0	0	0	0	0	0	0	4047	1015	35	4		4	CTNNA2	2	80364061	Intron	DNP	GG	TCGA-17-Z043-01A-01W-0746-08	2800578	80364061	162835312	83	79567											
GGCX	2677	broad.mit.edu	37	chr2	85777682	85777682	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgttgtgaacttacctgcGgcgaaagacatagagctttc	10	8	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85777682	C	C	85777682	3	2	72	1	0	0	0	0	1	0	0	0	6420	1116	39	4	204	4	GGCX	2	85777682	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5413621	85777682	157421691	84	79568											
REEP1	65055	broad.mit.edu	37	chr2	86491201	86491201	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacacagctggtagaaaagGtccaggaaaaacactgccca	9	11	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86491201	C	C	86491201	1	2	72	0	1	0	0	0	0	0	0	0	13312	1276	44	4		4	REEP1	2	86491201	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	713519	86491201	156708172	85	79569											
RMND5A	64795	broad.mit.edu	37	chr2	87410244	87410244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattattgattggtaaaaaCggaaagaaataattctaaat	7	2	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87410244	A	A	87410244	1	1	72	0	1	0	0	0	0	0	0	0	13508	551	19	3		3	RMND5A	2	87410244	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	919043	87410244	155789129	86	79570											
TRIM43	129868	broad.mit.edu	37	chr2	96261979	96261979	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttttacgggcacagatgatCaggaatgagtataggaagct	13	5	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96261979	A	A	96261979	2	1	72	1	0	0	0	0	0	0	0	1	16642	816	29	3		3	TRIM43	2	96261979	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8851735	96261979	146937394	87	79571											
CNGA3	1261	broad.mit.edu	37	chr2	99008318	99008318	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatccatctcccacatggCttctttagggcctgtttcga	8	14	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99008318	T	T	99008318	1	4	72	0	1	0	0	0	0	0	0	0	3630	812	28	4		4	CNGA3	2	99008318	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2746339	99008318	144191055	88	79572											
AFF3	3899	broad.mit.edu	37	chr2	100182146	100182146	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttttaaatggcattgtCatgtagtttatacaccttat	5	5	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100182146	G	G	100182146	1	3	72	0	1	0	0	0	0	0	0	0	358	841	29	4		4	AFF3	2	100182146	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1173828	100182146	143017227	89	79573											
EDAR	10913	broad.mit.edu	37	chr2	109513583	109513583	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccgaagctctcggcgaggTggcgccacgttttcacaaca	13	13	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109513583	G	G	109513583	3	3	72	1	0	0	0	0	1	0	0	0	4945	1696	59	5	223	5	EDAR	2	109513583	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	9331437	109513583	133685790	90	79574											
TFCP2L1	29842	broad.mit.edu	37	chr2	121981887	121981887	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatccacagggctgggaGctggagacaggtatgaggtc	19	7	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121981887	T	T	121981887	1	4	72	0	1	0	0	0	0	0	0	0	15919	986	34	3		3	TFCP2L1	2	121981887	3'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	12468304	121981887	121217486	91	79575											
IWS1	55677	broad.mit.edu	37	chr2	128255738	128255738	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttcctctctttatgttatCatcagaatctgaatcttctg	4	9	6	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128255738	T	T	128255738	3	4	72	1	0	0	0	0	1	0	0	0	8001	826	29	4	952	4	IWS1	2	128255738	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6273851	128255738	114943635	92	79576											
HS6ST1	9394	broad.mit.edu	37	chr2	129026475	129026475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggggagaggaggtgagggCtgtgacgcagcatgaggggg	23	5	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129026475	A	A	129026475	1	1	72	0	1	0	0	0	0	0	0	0	7437	812	28	3		3	HS6ST1	2	129026475	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	770737	129026475	114172898	93	79577											
LRP1B	53353	broad.mit.edu	37	chr2	141202236	141202236	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgaaatcggcctggctgaCatctaaattcagctagggga	11	9	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141202236	T	T	141202236	3	4	72	1	0	0	0	0	1	0	0	0	9042	478	17	4	3841	4	LRP1B	2	141202236	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	12175761	141202236	101997137	94	79578											
ARHGAP15	55843	broad.mit.edu	37	chr2	144194614	144194614	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcacagaaaatctttaagtGagtattttctttgacttgct	7	6	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144194614	A	A	144194614	1	1	72	0	1	0	0	0	0	0	0	0	868	1305	45	4		4	ARHGAP15	2	144194614	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2992378	144194614	99004759	95	79579											
ARHGAP15	55843	broad.mit.edu	37	chr2	144315003	144315003	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaaaggaaaactagagAgagtaaaagatgagtggaag	15	1	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144315003	G	G	144315003	1	3	72	0	1	0	0	0	0	0	0	0	868	319	11	5		5	ARHGAP15	2	144315003	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	120389	144315003	98884370	96	79580											
RIF1	55183	broad.mit.edu	37	chr2	152320281	152320281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcagaaaacccttagacGgtcttcaaggcgacgttcag	9	10	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152320281	T	T	152320281	3	4	72	1	0	0	0	0	1	0	0	0	13468	1116	39	1	4361	1	RIF1	2	152320281	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	8005278	152320281	90879092	97	79581											
KCNJ3	3760	broad.mit.edu	37	chr2	155566162	155566162	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccccttgaccaacttgaActggatgtaggttttagtac	8	10	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155566162	T	T	155566162	3	4	72	1	0	0	0	0	1	0	0	0	8122	40	2	5	756	5	KCNJ3	2	155566162	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3245881	155566162	87633211	98	79582											
ACVR1	90	broad.mit.edu	37	chr2	158630717	158630717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctgtggtttaagacaagGgggaaaagaaacgattgagc	13	5	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158630717	A	A	158630717	1	1	72	0	1	0	0	0	0	0	0	0	220	1247	43	4		4	ACVR1	2	158630717	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	3064555	158630717	84568656	99	79583											
BAZ2B	29994	broad.mit.edu	37	chr2	160243034	160243034	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaactttaccaaagtttcGtaagaactgcaccaccatga	5	11	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160243034	A	A	160243034	4	1	72	1	0	0	0	0	0	1	0	0	1337	1153	40	4	3269	4	BAZ2B	2	160243034	Nonsense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1612317	160243034	82956339	100	79584											
KCNH7	90134	broad.mit.edu	37	chr2	163241032	163241032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaccacttgttttagaataGtgcaaacacttcatggatga	7	7	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163241032	A	A	163241032	1	1	72	0	1	0	0	0	0	0	0	0	8107	1044	36	4		4	KCNH7	2	163241032	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2997998	163241032	79958341	101	79585											
SCN9A	6335	broad.mit.edu	37	chr2	167208529	167208529	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatagacttccctattgtcTtcattctatggcgtttctta	5	9	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167208529	C	C	167208529	1	2	72	0	1	0	0	0	0	0	0	0	14038	1624	56	5		5	SCN9A	2	167208529	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	3967497	167208529	75990844	102	79586											
XIRP2	129446	broad.mit.edu	37	chr2	168103983	168103983	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccccaaaggcactgtaaaGattgtcatagatcgtgaaca	9	10	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168103983	T	T	168103983	3	4	72	1	0	0	0	0	1	0	0	0	17557	933	33	3	6111	3	XIRP2	2	168103983	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	895454	168103983	75095390	103	79587											
RAPGEF4	11069	broad.mit.edu	37	chr2	173662380	173662380	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaagtaggatttattttTtttaaagacttattatccct	5	4	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173662380	C	C	173662380	1	2	72	0	1	0	0	0	0	0	0	0	13154	1856	64	5		5	RAPGEF4	2	173662380	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	5558397	173662380	69536993	104	79588											
TTN	7273	broad.mit.edu	37	chr2	179409131	179409131	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatttccagaacatatcctAcaatgtcagtaccaccatcg	5	13	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179409131	G	G	179409131	3	3	72	1	0	0	0	0	1	0	0	0	16861	391	14	5	12226	5	TTN	2	179409131	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	5746751	179409131	63790242	105	79589											
TTN	7273	broad.mit.edu	37	chr2	179414451	179414451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcctcaattagtgcccaGgcaagtctgctggtttcccg	9	12	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179414451	T	T	179414451	2	4	72	1	0	0	0	0	0	0	0	1	16861	987	35	2		2	TTN	2	179414451	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5320	179414451	63784922	106	79590											
TTN	7273	broad.mit.edu	37	chr2	179658062	179658062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaacaacactcttcatgGtaaaggtgattatctgtgtt	9	6	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179658062	T	T	179658062	1	4	72	0	1	0	0	0	0	0	0	0	16861	1276	44	3		3	TTN	2	179658062	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	243611	179658062	63541311	107	79591											
ZNF385B	151126	broad.mit.edu	37	chr2	180679346	180679346	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accgtggactgtagggccctCaatggtggcgacctggtctt	14	11	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180679346	G	G	180679346	1	3	72	0	1	0	0	0	0	0	0	0	18003	841	29	4		4	ZNF385B	2	180679346	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1021284	180679346	62520027	108	79592											
NUP35	129401	broad.mit.edu	37	chr2	184022190	184022190	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtttcctcaagcatctgcTtcctacatattactacaatt	4	11	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184022190	G	G	184022190	2	3	72	1	0	0	0	0	0	0	0	1	10858	1596	56	5		5	NUP35	2	184022190	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	3342844	184022190	59177183	109	79593											
COL5A2	1290	broad.mit.edu	37	chr2	189933534	189933534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacctggagagccaactGgacctgggggcccagtttca	14	11	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189933534	T	T	189933534	3	4	72	1	0	0	0	0	1	0	0	0	3729	1348	47	2	3408	2	COL5A2	2	189933534	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5911344	189933534	53265839	110	79594											
SLC40A1	30061	broad.mit.edu	37	chr2	190428759	190428759	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagcccaggacagtcataTaaaggaaagcaagacccatg	9	10	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190428759	C	C	190428759	3	2	72	1	0	0	0	0	1	0	0	0	14742	1406	49	5	770	5	SLC40A1	2	190428759	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	495225	190428759	52770614	111	79595											
ORC2L	4999	broad.mit.edu	37	chr2	201800352	201800352	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattttgagagatgtggatcTcttagggtagcctatctttg	11	5	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201800352	G	G	201800352	1	3	72	0	1	0	0	0	0	0	0	0	11356	1566	54	5		5	ORC2L	2	201800352	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	11371593	201800352	41399021	112	79596											
NRP2	8828	broad.mit.edu	37	chr2	206590698	206590699	+	Missense_Mutation	DNP	TG	CT	CT													attgctaatgaacagatcagTgcctcatctacctactctga							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	206590699	CT	CT	206590698	3	2	72	1	0	0	0	0	1	0	0	0	10756	1693	59	5	904	5	NRP2	2	206590698	Missense_Mutation	DNP	TG	TCGA-17-Z043-01A-01W-0746-08	4790346	206590698	36608675	113	79597											
CPS1	1373	broad.mit.edu	37	chr2	211447412	211447412	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatccaaataaacagaatttGattgctgaggtttcaaccaa	7	7	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211447412	C	C	211447412	3	2	72	1	0	0	0	0	1	0	0	0	3855	1281	45	4	644	4	CPS1	2	211447412	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4856714	211447412	31751961	114	79598											
SPEG	10290	broad.mit.edu	37	chr2	220354245	220354245	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccaggccttgtcctcgctCaaggctgtgggtccaccacc	11	16	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220354245	G	G	220354245	2	3	72	1	0	0	0	0	0	0	0	1	15154	813	29	4		4	SPEG	2	220354245	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8906833	220354245	22845128	115	79599											
DOCK10	55619	broad.mit.edu	37	chr2	225709558	225709558	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatgtcactcccaccatgcTgcaaaataaagtttgtttac	5	10	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225709558	A	A	225709558	5	1	72	1	0	0	0	0	0	0	1	0	4725	1594	55	5	4220	5	DOCK10	2	225709558	Splice_Site	SNP	T	TCGA-17-Z043-01A-01W-0746-08	5355313	225709558	17489815	116	79600											
PID1	55022	broad.mit.edu	37	chr2	230020504	230020504	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttgaggctatctcaccaaGagaacccctgctggccacgt	9	14	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230020504	A	A	230020504	1	1	72	0	1	0	0	0	0	0	0	0	11977	957	33	4		4	PID1	2	230020504	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4310946	230020504	13178869	117	79601											
DIS3L2	129563	broad.mit.edu	37	chr2	233028203	233028203	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgggcaggctggtgaaAttgagcctgaaacagaagga	15	6	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233028203	T	T	233028203	3	4	72	1	0	0	0	0	1	0	0	0	4577	101	4	5	1015	5	DIS3L2	2	233028203	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3007699	233028203	10171170	118	79602											
ITPR1	3708	broad.mit.edu	37	chr3	4774739	4774739	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcggtgatgcattaaatgcAgaagctgattttattatcct	8	7	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4774739	G	G	4774739	1	3	72	0	1	0	0	0	0	0	0	0	7990	203	7	5		5	ITPR1	3	4774739	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08		4774739	193247691	119	79603											
PLCL2	23228	broad.mit.edu	37	chr3	17051510	17051510	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttccgtcatatatggagaGaattatgagtcactggattt	9	5	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17051510	C	C	17051510	3	2	72	1	0	0	0	0	1	0	0	0	12135	933	33	4	672	4	PLCL2	3	17051510	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	12276771	17051510	180970920	120	79604											
RBMS3	27303	broad.mit.edu	37	chr3	29938862	29938862	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatcttcctttttgttttctGtttgcagattttattcttca	4	7	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29938862	C	C	29938862	1	2	72	0	1	0	0	0	0	0	0	0	13258	1392	48	4		4	RBMS3	3	29938862	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	12887352	29938862	168083568	121	79605											
TGFBR2	7048	broad.mit.edu	37	chr3	30686295	30686295	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcaagtttccacaactgTgtaaattttgtgatgtgaga	9	6	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30686295	C	C	30686295	3	2	72	1	0	0	0	0	1	0	0	0	15945	1696	59	5	236	5	TGFBR2	3	30686295	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	747433	30686295	167336135	122	79606											
CCR8	1237	broad.mit.edu	37	chr3	39373778	39373778	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaaatgtttttaaggaGtgaatgtcttttatgtgtct	8	2	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39373778	T	T	39373778	1	4	72	0	1	0	0	0	0	0	0	0	2977	1044	36	3		3	CCR8	3	39373778	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	8687483	39373778	158648652	123	79607											
MYRIP	25924	broad.mit.edu	37	chr3	40204175	40204175	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcagggttcactgaagacCtttgataatcatattcattc	6	9	4	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40204175	G	G	40204175	1	3	72	0	1	0	0	0	0	0	0	0	10194	696	24	4		4	MYRIP	3	40204175	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	830397	40204175	157818255	124	79608											
COL7A1	1294	broad.mit.edu	37	chr3	48607596	48607596	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggggtccctcctggccggGgcggccatcttcaccctgga	14	16	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48607596	A	A	48607596	3	1	72	1	0	0	0	0	1	0	0	0	3736	1232	43	4	1462	4	COL7A1	3	48607596	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	8403421	48607596	149414834	125	79609											
PRKAR2A	5576	broad.mit.edu	37	chr3	48810501	48810501	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatattgaccaacagagcGggtttgattatcttttgtta	9	6	2	3	rs147886817		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48810501	A	A	48810501	3	1	72	1	0	0	0	0	1	0	0	0	12611	1116	39	4	655	4	PRKAR2A	3	48810501	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	202905	48810501	149211929	126	79610											
USP19	10869	broad.mit.edu	37	chr3	49153944	49153944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactcttgaggtgtccctgCagatctccttcacgtacacg	9	13	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49153944	A	A	49153944	3	1	72	1	0	0	0	0	1	0	0	0	17176	710	25	3	3116	3	USP19	3	49153944	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	343443	49153944	148868486	127	79611											
ADAMTS9	56999	broad.mit.edu	37	chr3	64617271	64617271	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtactccacagaatggttcActttctctaagtatggaata	7	8	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64617271	G	G	64617271	1	3	72	0	1	0	0	0	0	0	0	0	273	174	6	5		5	ADAMTS9	3	64617271	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	15463327	64617271	133405159	128	79612											
FAM19A1	407738	broad.mit.edu	37	chr3	68500976	68500976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatatgaaatgggtcattcCaaaatgagacagggagttag	12	4	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68500976	A	A	68500976	1	1	72	0	1	0	0	0	0	0	0	0	5578	609	21	2		2	FAM19A1	3	68500976	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3883705	68500976	129521454	129	79613											
EPHA6	285220	broad.mit.edu	37	chr3	97439124	97439124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggaaaaatccccataaGgtggacagccccagaagcca	12	11	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97439124	T	T	97439124	3	4	72	1	0	0	0	0	1	0	0	0	5213	1000	35	2	2979	2	EPHA6	3	97439124	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	28938148	97439124	100583306	130	79614											
DCBLD2	131566	broad.mit.edu	37	chr3	98518735	98518735	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttactagtaaagagatTgcataatttagggtggcagc	10	5	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98518735	G	G	98518735	1	3	72	0	1	0	0	0	0	0	0	0	4314	1827	63	5		5	DCBLD2	3	98518735	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1079611	98518735	99503695	131	79615											
LNP1	348801	broad.mit.edu	37	chr3	100174529	100174530	+	Intron	DNP	CA	TC	TC													gtggaagtctgctaaaccatCagggctttctccatgtctga							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	100174530	TC	TC	100174529	1	4	72	0	1	0	0	0	0	0	0	0	8937	841	29	4		4	LNP1	3	100174529	Intron	DNP	CA	TCGA-17-Z043-01A-01W-0746-08	1655794	100174529	97847901	132	79616											
DPPA4	55211	broad.mit.edu	37	chr3	109056280	109056280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagaaacacaaagacagaCagaaaacaaatccactaaaa	5	9	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109056280	A	A	109056280	1	1	72	0	1	0	0	0	0	0	0	0	4776	493	17	3		3	DPPA4	3	109056280	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8881751	109056280	88966150	133	79617											
CD200	4345	broad.mit.edu	37	chr3	112065092	112065092	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctcctccctgtctccttCcttcctttcctccctctctg	2	20	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112065092	A	A	112065092	1	1	72	0	1	0	0	0	0	0	0	0	3010	870	30	3		3	CD200	3	112065092	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3008812	112065092	85957338	134	79618											
GOLGB1	2804	broad.mit.edu	37	chr3	121388033	121388033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatttcatcacacttctccCagtctctcaccttctcttta	1	15	6	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121388033	A	A	121388033	1	1	72	0	1	0	0	0	0	0	0	0	6629	609	21	2		2	GOLGB1	3	121388033	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	9322941	121388033	76634397	135	79619											
CD86	942	broad.mit.edu	37	chr3	121828232	121828232	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggaagaagaagaagcGgcctcgcaactcttataaat	10	7	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121828232	A	A	121828232	3	1	72	1	0	0	0	0	1	0	0	0	3073	1116	39	4	842	4	CD86	3	121828232	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	440199	121828232	76194198	136	79620											
ITGB5	3693	broad.mit.edu	37	chr3	124527714	124527714	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagactctgaacacatcaTgcaaaacaggcttaggagac	9	10	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124527714	A	A	124527714	1	1	72	0	1	0	0	0	0	0	0	0	7968	1479	51	5		5	ITGB5	3	124527714	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2699482	124527714	73494716	137	79621											
CPNE4	131034	broad.mit.edu	37	chr3	131436557	131436557	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacaggctcttttctggcCccctcttttcagtttacata	7	12	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131436557	A	A	131436557	1	1	72	0	1	0	0	0	0	0	0	0	3846	638	22	2		2	CPNE4	3	131436557	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6908843	131436557	66585873	138	79622											
MRAS	22808	broad.mit.edu	37	chr3	138123436	138123436	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgagagagactagttaaGggttggtcttctgtatcctc	12	8	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138123436	T	T	138123436	1	4	72	0	1	0	0	0	0	0	0	0	9849	1015	35	2		2	MRAS	3	138123436	3'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6686879	138123436	59898994	139	79623											
RBP2	5948	broad.mit.edu	37	chr3	139180964	139180964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtcagtaccttaacatgcCggttatccaggctctttgtg	10	11	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139180964	T	T	139180964	3	4	72	1	0	0	0	0	1	0	0	0	13264	652	23	4	174	4	RBP2	3	139180964	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1057528	139180964	58841466	140	79624											
TRIM42	287015	broad.mit.edu	37	chr3	140406869	140406869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcagtcagccaagatcCtggtggaccagatcgaggac	12	12	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140406869	A	A	140406869	3	1	72	1	0	0	0	0	1	0	0	0	16641	680	24	2	1355	2	TRIM42	3	140406869	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1225905	140406869	57615561	141	79625											
ATR	545	broad.mit.edu	37	chr3	142176600	142176600	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttcaaaggtttctccctTagaaacaatacattttatta	3	8	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142176600	A	A	142176600	1	1	72	0	1	0	0	0	0	0	0	0	1208	1769	61	5		5	ATR	3	142176600	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1769731	142176600	55845830	142	79626											
ATR	545	broad.mit.edu	37	chr3	142281289	142281289	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtttttccagcagcatatTtaaatagacaggttcaatat	7	6	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142281289	A	A	142281289	3	1	72	1	0	0	0	0	1	0	0	0	1208	1841	64	5	7155	5	ATR	3	142281289	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	104689	142281289	55741141	143	79627											
GPR149	344758	broad.mit.edu	37	chr3	154145563	154145563	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacttctcaagccttttctCcacgcacgctgcctcagttc	6	16	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154145563	A	A	154145563	1	1	72	0	1	0	0	0	0	0	0	0	6719	870	30	3		3	GPR149	3	154145563	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	11864274	154145563	43876867	144	79628											
KCNAB1	7881	broad.mit.edu	37	chr3	156241788	156241788	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggacttctgctgagatcaTagttttctattgctgaccac	9	9	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156241788	A	A	156241788	1	1	72	0	1	0	0	0	0	0	0	0	8079	1421	49	5		5	KCNAB1	3	156241788	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2096225	156241788	41780642	145	79629											
LEKR1	389170	broad.mit.edu	37	chr3	156729134	156729134	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtaatatctcccgacccAggaactacaacttaggaatt	7	10	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156729134	G	G	156729134	1	3	72	0	1	0	0	0	0	0	0	0	8789	203	7	5		5	LEKR1	3	156729134	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	487346	156729134	41293296	146	79630											
SLITRK3	22865	broad.mit.edu	37	chr3	164907125	164907125	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggcatgaggctgaaggcTgcaggctggatttcccggat	16	8	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164907125	C	C	164907125	2	2	72	1	0	0	0	0	0	0	0	1	14858	1567	55	5		5	SLITRK3	3	164907125	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	8177991	164907125	33115305	147	79631											
ECT2	1894	broad.mit.edu	37	chr3	172538090	172538090	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactcaaataagaaactgActtaaatggtacttgtaatt	5	6	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172538090	C	C	172538090	1	2	72	0	1	0	0	0	0	0	0	0	4941	290	10	5		5	ECT2	3	172538090	3'UTR	SNP	A	TCGA-17-Z043-01A-01W-0746-08	7630965	172538090	25484340	148	79632											
NAALADL2	254827	broad.mit.edu	37	chr3	175520526	175520527	+	Intron	INS	-	T	T													tctttttctatcaaaactgcINSttttttttgtttcgtagtgt					rs147807605	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175520527	T	T	175520526	6	5	72	0	1	1	1	0	0	0	0	0	10224	812	28	0		0	NAALADL2	3	175520526	Intron	INS	-	TCGA-17-Z043-01A-01W-0746-08	2982436	175520526	22501904	149	79633											
LAMP3	27074	broad.mit.edu	37	chr3	182853786	182853786	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttccttccttccgaggggCtttctgggggttctgccacc	11	15	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182853786	T	T	182853786	1	4	72	0	1	0	0	0	0	0	0	0	8691	812	28	4		4	LAMP3	3	182853786	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	7333260	182853786	15168644	150	79634											
KLHL6	89857	broad.mit.edu	37	chr3	183210160	183210160	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatggctctcctgaaagccaGagtgggtcctaggggcagtg	16	9	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183210160	T	T	183210160	1	4	72	0	1	0	0	0	0	0	0	0	8464	957	33	3		3	KLHL6	3	183210160	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	356374	183210160	14812270	151	79635											
CHRD	8646	broad.mit.edu	37	chr3	184105183	184105183	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctattttgatggtgaccGgagctggcgggcagcgggta	17	8	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184105183	A	A	184105183	3	1	72	1	0	0	0	0	1	0	0	0	3403	1116	39	4	2443	4	CHRD	3	184105183	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	895023	184105183	13917247	152	79636											
MASP1	5648	broad.mit.edu	37	chr3	186967964	186967964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgccaagctttcaccCttgcatgctctgctcggatc	8	16	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186967964	A	A	186967964	1	1	72	0	1	0	0	0	0	0	0	0	9414	696	24	2		2	MASP1	3	186967964	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2862781	186967964	11054466	153	79637											
UBXN7	26043	broad.mit.edu	37	chr3	196098957	196098957	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttagaaataatttctactTagtgacagatgtttccgtag	8	5	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196098957	A	A	196098957	1	1	72	0	1	0	0	0	0	0	0	0	17044	1769	61	5		5	UBXN7	3	196098957	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	9130993	196098957	1923473	154	79638											
ZNF718	255403	broad.mit.edu	37	chr4	130323	130323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctatgggctcttgagttgGccacctgggtgaggccctgc	15	11	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130323	T	T	130323	1	4	72	0	1	0	0	0	0	0	0	0	18248	1218	42	3		3	ZNF718	4	130323	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08		130323	191023953	155	79639											
TMEM175	84286	broad.mit.edu	37	chr4	949544	949544	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctggcgtgtccccaggCcacagggagccctcggctca	12	18	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	949544	A	A	949544	2	1	72	1	0	0	0	0	0	0	0	1	16214	753	26	3		3	TMEM175	4	949544	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	819221	949544	190204732	156	79640											
KIAA1530	57654	broad.mit.edu	37	chr4	1374651	1374651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccgccatcagccaccGtgtcctcgctgtgcagtgcc	9	20	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1374651	T	T	1374651	1	4	72	0	1	0	0	0	0	0	0	0	8311	1160	40	3		3	KIAA1530	4	1374651	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	425107	1374651	189779625	157	79641											
CC2D2A	57545	broad.mit.edu	37	chr4	15504503	15504503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctcggcccagacgcttacGaagtcccagtaagaaagaat	9	12	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15504503	T	T	15504503	3	4	72	1	0	0	0	0	1	0	0	0	2754	1058	37	3	616	3	CC2D2A	4	15504503	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	14129852	15504503	175649773	158	79642											
PROM1	8842	broad.mit.edu	37	chr4	16037543	16037543	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatgagaaaggaatataaAacttgagtgtgaattcaaga	9	3	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16037543	C	C	16037543	1	2	72	0	1	0	0	0	0	0	0	0	12661	29	1	5		5	PROM1	4	16037543	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	533040	16037543	175116733	159	79643											
N4BP2	55728	broad.mit.edu	37	chr4	40104921	40104921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaataggcaaaatgctttGcttagtagagatctttagta	8	4	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40104921	T	T	40104921	1	4	72	0	1	0	0	0	0	0	0	0	10204	1334	46	3		3	N4BP2	4	40104921	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	24067378	40104921	151049355	160	79644											
GRXCR1	389207	broad.mit.edu	37	chr4	42895749	42895749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttctccagttaaagcaaGcctctcttatttgcaactcc	5	13	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42895749	T	T	42895749	1	4	72	0	1	0	0	0	0	0	0	0	6878	986	34	3		3	GRXCR1	4	42895749	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2790828	42895749	148258527	161	79645											
PPAT	5471	broad.mit.edu	37	chr4	57301533	57301533	+	Silent	SNP	G	C	C													caccggtgctgcagccccacGagtcccagagtgatcacatg							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57301533	C	C	57301533	2	2	72	1	0	0	0	0	0	0	0	1	12398	1045	37	4		4	PPAT	4	57301533	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	14405784	57301533	133852743	162	79646	363	2									
PPAT	5471	broad.mit.edu	37	chr4	57301535	57301535	+	Missense_Mutation	SNP	G	A	A													ccggtgctgcagccccacgaGtcccagagtgatcacatgcg							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57301535	A	A	57301535	3	1	72	1	0	0	0	0	1	0	0	0	12398	1029	36	4	1488	4	PPAT	4	57301535	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2	57301535	133852741	163	79647	363	2									
SHROOM3	57619	broad.mit.edu	37	chr4	77645880	77645880	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctttccagtgtaacaatAtatttggagatatttccata	5	7	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77645880	G	G	77645880	1	3	72	0	1	0	0	0	0	0	0	0	14408	464	16	5		5	SHROOM3	4	77645880	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	20344345	77645880	113508396	164	79648											
FRAS1	80144	broad.mit.edu	37	chr4	79385327	79385327	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcactgaactccatccttGaaaagtattgattcctcgcc	7	12	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385327	T	T	79385327	1	4	72	0	1	0	0	0	0	0	0	0	6102	1305	45	3		3	FRAS1	4	79385327	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1739447	79385327	111768949	165	79649											
INPP4B	8821	broad.mit.edu	37	chr4	143235749	143235749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccttgaagagccacaCcctgttaatgtaattcaatt	6	11	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143235749	A	A	143235749	1	1	72	0	1	0	0	0	0	0	0	0	7823	522	18	3		3	INPP4B	4	143235749	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	63850422	143235749	47918527	166	79650											
GUCY1B3	2983	broad.mit.edu	37	chr4	156727536	156727536	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcttctgcctatttaAggaaacaaagcaggatgatg	8	7	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156727536	T	T	156727536	5	4	72	1	0	0	0	0	0	0	1	0	6960	86	3	5	1889	5	GUCY1B3	4	156727536	Splice_Site	SNP	A	TCGA-17-Z043-01A-01W-0746-08	13491787	156727536	34426740	167	79651											
GRIA2	2891	broad.mit.edu	37	chr4	158281026	158281026	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccatctcttaatgctatcTggccccttacttttcctgca	6	14	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158281026	G	G	158281026	1	3	72	0	1	0	0	0	0	0	0	0	6834	1595	55	5		5	GRIA2	4	158281026	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1553490	158281026	32873250	168	79652											
CLCN3	1182	broad.mit.edu	37	chr4	170625361	170625361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctgtgtctgcctgtgtGtggatgtttgcaagtctgag	15	6	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170625361	T	T	170625361	1	4	72	0	1	0	0	0	0	0	0	0	3495	1392	48	3		3	CLCN3	4	170625361	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	12344335	170625361	20528915	169	79653											
TRIO	7204	broad.mit.edu	37	chr5	14266586	14266586	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcaactattcatttgatgAacagtataatgtttattatt	6	4	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14266586	T	T	14266586	1	4	72	0	1	0	0	0	0	0	0	0	16677	261	9	5		5	TRIO	5	14266586	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08		14266586	166648674	170	79654											
CDH18	1016	broad.mit.edu	37	chr5	19591214	19591214	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctctttgtcagtggagatTgagaatattcccatgccatc	9	9	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19591214	A	A	19591214	2	1	72	1	0	0	0	0	0	0	0	1	3133	1799	63	5		5	CDH18	5	19591214	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	5324628	19591214	161324046	171	79655											
CDH10	1008	broad.mit.edu	37	chr5	24511668	24511668	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagagacagagagagagagaGagagagagagagagagagag	20	1	0	9			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24511668	C	C	24511668	1	2	72	0	1	0	0	0	0	0	0	0	3126	957	33	4		4	CDH10	5	24511668	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4920454	24511668	156403592	172	79656											
ISL1	3670	broad.mit.edu	37	chr5	50683572	50683572	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgcatccagcgcggccacTgcaaatggcaggtactcctc	10	16	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683572	A	A	50683572	3	1	72	1	0	0	0	0	1	0	0	0	7926	1580	55	5	477	5	ISL1	5	50683572	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	26171904	50683572	130231688	173	79657											
ANKRD55	79722	broad.mit.edu	37	chr5	55407671	55407671	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtagagacatcactcacCgaaataccgaccccctattc	6	14	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55407671	T	T	55407671	1	4	72	0	1	0	0	0	0	0	0	0	681	667	23	4		4	ANKRD55	5	55407671	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4724099	55407671	125507589	174	79658											
SGTB	54557	broad.mit.edu	37	chr5	64976348	64976348	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaaggctggattatttatCaagctagccatgtcaaagct	9	7	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64976348	T	T	64976348	2	4	72	1	0	0	0	0	0	0	0	1	14339	825	29	4		4	SGTB	5	64976348	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	9568677	64976348	115938912	175	79659											
THBS4	7060	broad.mit.edu	37	chr5	79368108	79368108	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttctcacaggaataaaAaacattctggacaactgccc	5	11	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79368108	G	G	79368108	2	3	72	1	0	0	0	0	0	0	0	1	15979	11	1	5		5	THBS4	5	79368108	Silent	SNP	A	TCGA-17-Z043-01A-01W-0746-08	14391760	79368108	101547152	176	79660											
RASGRF2	5924	broad.mit.edu	37	chr5	80376547	80376547	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaactcttaaaacagtatgAagccaatccagcctgtgagg	8	10	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80376547	C	C	80376547	3	2	72	1	0	0	0	0	1	0	0	0	13181	246	9	5	1126	5	RASGRF2	5	80376547	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1008439	80376547	100538713	177	79661											
RASA1	5921	broad.mit.edu	37	chr5	86633771	86633771	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttttaaatttaataacTttaaaattgctattttcagt	2	3	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86633771	C	C	86633771	1	2	72	0	1	0	0	0	0	0	0	0	13168	1624	56	5		5	RASA1	5	86633771	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	6257224	86633771	94281489	178	79662											
SLIT3	6586	broad.mit.edu	37	chr5	168244331	168244331	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacgtactccttcttctgcAcatccgccacgttgaagccc	6	17	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168244331	T	T	168244331	3	4	72	1	0	0	0	0	1	0	0	0	14855	159	6	5	3920	5	SLIT3	5	168244331	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	81610560	168244331	12670929	179	79663											
C5orf25	375484	broad.mit.edu	37	chr5	175735327	175735327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacgttctgataagaggaaGgaccaagtagaaatttcacc	10	8	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175735327	T	T	175735327	1	4	72	0	1	0	0	0	0	0	0	0	2311	1015	35	2		2	C5orf25	5	175735327	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	7490996	175735327	5179933	180	79664											
LY86	9450	broad.mit.edu	37	chr6	6652918	6652918	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaaactctgtgccctcctCaacagcagaaacgctgcact	6	15	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6652918	T	T	6652918	1	4	72	0	1	0	0	0	0	0	0	0	9188	841	29	4		4	LY86	6	6652918	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		6652918	164462149	181	79665											
HDGFL1	154150	broad.mit.edu	37	chr6	22569722	22569722	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtcgctcaacaactcccGcccagcagccgcccttactg	8	19	1	0	rs79706674	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22569722	A	A	22569722	1	1	72	0	1	0	0	0	0	0	0	0	7086	1102	38	4		4	HDGFL1	6	22569722	5'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	15916804	22569722	148545345	182	79666											
HDGFL1	154150	broad.mit.edu	37	chr6	22569903	22569903	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggatagagcacatgacCcagcccaaccgctaccaggt	11	14	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22569903	T	T	22569903	2	4	72	1	0	0	0	0	0	0	0	1	7086	610	22	4		4	HDGFL1	6	22569903	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	181	22569903	148545164	183	79667											
SLC17A1	6568	broad.mit.edu	37	chr6	25820182	25820182	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgtcgaatcactctgcatAtcagaaatttactgtgacat	6	9	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25820182	T	T	25820182	1	4	72	0	1	0	0	0	0	0	0	0	14529	464	16	5		5	SLC17A1	6	25820182	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3250279	25820182	145294885	184	79668											
SCAND3	114821	broad.mit.edu	37	chr6	28543125	28543125	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttcaattctggccaaaTattactgagttcactgacaa	5	8	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28543125	C	C	28543125	3	2	72	1	0	0	0	0	1	0	0	0	13988	1406	49	5	2628	5	SCAND3	6	28543125	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2722943	28543125	142571942	185	79669											
TRIM10	10107	broad.mit.edu	37	chr6	30126068	30126068	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctctgacccacctcccAtctgggatacagagatgtgt	10	13	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30126068	G	G	30126068	1	3	72	0	1	0	0	0	0	0	0	0	16610	232	8	5		5	TRIM10	6	30126068	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1582943	30126068	140988999	186	79670											
DDR1	780	broad.mit.edu	37	chr6	30861222	30861222	+	Intron	DEL	G	-	-													tgggcacagccgtggcatgtGgagtggcggggggaggccag							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30861222	-	-	30861222	6	5	72	0	1	1	0	1	0	0	0	0	4369	1363	47	0		0	DDR1	6	30861222	Intron	DEL	G	TCGA-17-Z043-01A-01W-0746-08	735154	30861222	140253845	187	79671											
MICB	4277	broad.mit.edu	37	chr6	31465119	31465119	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatattgaaggggactatGgtcccagaggtacagatgtc	13	7	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31465119	T	T	31465119	1	4	72	0	1	0	0	0	0	0	0	0	9668	1363	47	2		2	MICB	6	31465119	5'Flank	SNP	G	TCGA-17-Z043-01A-01W-0746-08	603897	31465119	139649948	188	79672											
BAT4	7918	broad.mit.edu	37	chr6	31630177	31630177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagccacagctcgggtatCccaagctgggaaatgtgtca	11	13	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31630177	A	A	31630177	3	1	72	1	0	0	0	0	1	0	0	0	1328	855	30	3	137	3	BAT4	6	31630177	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	165058	31630177	139484890	189	79673											
C6orf222	389384	broad.mit.edu	37	chr6	36287308	36287308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagtgagccacctggctgCgcagggtggctaccagcttg	16	11	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36287308	A	A	36287308	3	1	72	1	0	0	0	0	1	0	0	0	2379	768	27	3	218	3	C6orf222	6	36287308	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4657131	36287308	134827759	190	79674											
DNAH8	1769	broad.mit.edu	37	chr6	38781992	38781992	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcatttaggtaacattttGgtcctatgtcttttttcact	5	7	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38781992	C	C	38781992	1	2	72	0	1	0	0	0	0	0	0	0	4647	1363	47	4		4	DNAH8	6	38781992	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2494684	38781992	132333075	191	79675											
DNAH8	1769	broad.mit.edu	37	chr6	38864052	38864052	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagattgctcacctgactaGatctttctctctgcaccaga	6	13	5	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38864052	A	A	38864052	1	1	72	0	1	0	0	0	0	0	0	0	4647	957	33	4		4	DNAH8	6	38864052	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	82060	38864052	132251015	192	79676											
DNAH8	1769	broad.mit.edu	37	chr6	38942452	38942452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttccccacctggtataGtgtatatttgtttatgtatt	6	8	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38942452	T	T	38942452	1	4	72	0	1	0	0	0	0	0	0	0	4647	1044	36	3		3	DNAH8	6	38942452	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	78400	38942452	132172615	193	79677											
UBR2	23304	broad.mit.edu	37	chr6	42625700	42625700	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatttatgttcctgtgcGtaggaataagtactatgaag	10	6	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42625700	C	C	42625700	1	2	72	0	1	0	0	0	0	0	0	0	17028	1160	40	4		4	UBR2	6	42625700	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	3683248	42625700	128489367	194	79678											
UBR2	23304	broad.mit.edu	37	chr6	42641513	42641513	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttgttttttgttaattgCgttggtttattttaggatga	9	1	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42641513	T	T	42641513	1	4	72	0	1	0	0	0	0	0	0	0	17028	783	27	4		4	UBR2	6	42641513	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	15813	42641513	128473554	195	79679											
PPP2R5D	5528	broad.mit.edu	37	chr6	42976964	42976964	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctctagcccccatttccAggtgagactccaacctagca	7	15	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42976964	T	T	42976964	3	4	72	1	0	0	0	0	1	0	0	0	12496	202	7	5	1292	5	PPP2R5D	6	42976964	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	335451	42976964	128138103	196	79680											
RCAN2	10231	broad.mit.edu	37	chr6	46272997	46272997	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgcatggtggctgggaGctaatggataaatgcttccc	13	7	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46272997	C	C	46272997	1	2	72	0	1	0	0	0	0	0	0	0	13277	986	34	4		4	RCAN2	6	46272997	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	3296033	46272997	124842070	197	79681											
GPR116	221395	broad.mit.edu	37	chr6	46830550	46830550	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcagcaccaaacccattttCctaagtgctgagaaatatga	7	10	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46830550	T	T	46830550	1	4	72	0	1	0	0	0	0	0	0	0	6698	870	30	4		4	GPR116	6	46830550	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	557553	46830550	124284517	198	79682											
PKHD1	5314	broad.mit.edu	37	chr6	51774038	51774038	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtagtgccttaaacatgGgagaaagaaacatgagaaag	11	5	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51774038	A	A	51774038	1	1	72	0	1	0	0	0	0	0	0	0	12066	1247	43	4		4	PKHD1	6	51774038	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4943488	51774038	119341029	199	79683											
DST	667	broad.mit.edu	37	chr6	56327725	56327725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacttatcttatagaagtgTataaaaagacatagggttag	8	3	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56327725	C	C	56327725	1	2	72	0	1	0	0	0	0	0	0	0	4823	1653	57	5		5	DST	6	56327725	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4553687	56327725	114787342	200	79684											
DST	667	broad.mit.edu	37	chr6	56371575	56371575	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctgtagtccatctatttCttcccttatggtctagaata	5	11	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56371575	G	G	56371575	3	3	72	1	0	0	0	0	1	0	0	0	4823	922	32	4	4244	4	DST	6	56371575	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	43850	56371575	114743492	201	79685											
PRIM2	5558	broad.mit.edu	37	chr6	57512398	57512398	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagttttaaacaagtactAaaacagcttttgaaactcat	4	6	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57512398	G	G	57512398	1	3	72	0	1	0	0	0	0	0	0	0	12597	377	13	5		5	PRIM2	6	57512398	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1140823	57512398	113602669	202	79686											
HTR1E	3354	broad.mit.edu	37	chr6	87726013	87726013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtctgagcatctacaccGtgtcctcggaagtggccgac	13	12	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87726013	T	T	87726013	3	4	72	1	0	0	0	0	1	0	0	0	7509	1145	40	3	963	3	HTR1E	6	87726013	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	30213615	87726013	83389054	203	79687											
CNR1	1268	broad.mit.edu	37	chr6	88854039	88854039	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccatcctcagacgtgtggaTgatgatgctcttctgggtgc	12	11	3	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88854039	A	A	88854039	3	1	72	1	0	0	0	0	1	0	0	0	3663	1464	51	5	467	5	CNR1	6	88854039	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1128026	88854039	82261028	204	79688											
POU3F2	5454	broad.mit.edu	37	chr6	99283514	99283514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggccacccaggcgcgcaCcacgacccgcactcggacga	11	20	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99283514	A	A	99283514	3	1	72	1	0	0	0	0	1	0	0	0	12371	506	18	3	767	3	POU3F2	6	99283514	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	10429475	99283514	71831553	205	79689											
POPDC3	64208	broad.mit.edu	37	chr6	105607676	105607676	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtaatgcagaaattcgccAtcaactgtcactctgatcct	6	11	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105607676	G	G	105607676	2	3	72	1	0	0	0	0	0	0	0	1	12351	214	8	5		5	POPDC3	6	105607676	Silent	SNP	A	TCGA-17-Z043-01A-01W-0746-08	6324162	105607676	65507391	206	79690											
SEC63	11231	broad.mit.edu	37	chr6	108227934	108227934	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcttgtggcatctttatTatactgaggatcaaattcag	8	7	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108227934	C	C	108227934	3	2	72	1	0	0	0	0	1	0	0	0	14118	1754	61	5	1553	5	SEC63	6	108227934	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2620258	108227934	62887133	207	79691											
REV3L	5980	broad.mit.edu	37	chr6	111701102	111701102	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataaggtattttatatcaTgaacaatagtaataaataat	4	3	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111701102	C	C	111701102	1	2	72	0	1	0	0	0	0	0	0	0	13348	1479	51	5		5	REV3L	6	111701102	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	3473168	111701102	59413965	208	79692											
LAMA2	3908	broad.mit.edu	37	chr6	129250509	129250509	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggtgagacctcgagagaAtacaaagaagttcatcagtc	12	7	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129250509	T	T	129250509	1	4	72	0	1	0	0	0	0	0	0	0	8678	116	4	5		5	LAMA2	6	129250509	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	17549407	129250509	41864558	209	79693											
EYA4	2070	broad.mit.edu	37	chr6	133833824	133833824	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatggtaacaagcatcattTagaaaacaaataacttttcc	5	8	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133833824	C	C	133833824	1	2	72	0	1	0	0	0	0	0	0	0	5374	1769	61	5		5	EYA4	6	133833824	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4583315	133833824	37281243	210	79694											
PEX3	8504	broad.mit.edu	37	chr6	143772021	143772021	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacgcccccttgccgctccGgtgacagtctctgcggaaag	11	17	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143772021	C	C	143772021	1	2	72	0	1	0	0	0	0	0	0	0	11842	1131	39	4		4	PEX3	6	143772021	5'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	9938197	143772021	27343046	211	79695											
UTRN	7402	broad.mit.edu	37	chr6	144811183	144811183	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaaaaaaaaggacatcctCtcccctttccaatctctttt	2	12	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144811183	A	A	144811183	1	1	72	0	1	0	0	0	0	0	0	0	17230	928	32	3		3	UTRN	6	144811183	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1039162	144811183	26303884	212	79696											
SYNE1	23345	broad.mit.edu	37	chr6	152690334	152690334	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggacgaagctttggcccagaGaacatggaaatcaacactgg	12	9	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152690334	A	A	152690334	1	1	72	0	1	0	0	0	0	0	0	0	15564	957	33	4		4	SYNE1	6	152690334	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	7879151	152690334	18424733	213	79697											
PARK2	5071	broad.mit.edu	37	chr6	162720292	162720292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcactgtgagctcccgaCttagattcaatgccagaaac	9	12	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162720292	A	A	162720292	1	1	72	0	1	0	0	0	0	0	0	0	11543	580	20	3		3	PARK2	6	162720292	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	10029958	162720292	8394775	214	79698											
FRMD1	79981	broad.mit.edu	37	chr6	168479609	168479609	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcagcagcacgaggaCatccctgtgttccgaggcca	14	13	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168479609	T	T	168479609	3	4	72	1	0	0	0	0	1	0	0	0	6109	478	17	4	1540	4	FRMD1	6	168479609	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5759317	168479609	2635458	215	79699											
THSD7A	221981	broad.mit.edu	37	chr7	11422124	11422124	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttacaggaagattttcaaagGacaaagagaaactggaggtt	11	4	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11422124	C	C	11422124	1	2	72	0	1	0	0	0	0	0	0	0	16002	1189	41	4		4	THSD7A	7	11422124	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08		11422124	147716539	216	79700											
NEUROD6	63974	broad.mit.edu	37	chr7	31378149	31378149	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacactcaggggaagtacttTcatagaaggattcatacgca	9	9	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31378149	C	C	31378149	3	2	72	1	0	0	0	0	1	0	0	0	10446	1783	62	5	283	5	NEUROD6	7	31378149	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	19956025	31378149	127760514	217	79701											
NT5C3	51251	broad.mit.edu	37	chr7	33057180	33057180	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacggggatgctatgttgTtggagcttatcaaagaaatt	11	5	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33057180	C	C	33057180	2	2	72	1	0	0	0	0	0	0	0	1	10783	1722	60	5		5	NT5C3	7	33057180	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1679031	33057180	126081483	218	79702											
ELMO1	9844	broad.mit.edu	37	chr7	37156893	37156893	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagcttggggtggtaccaaGagagacaaggagataactac	13	7	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37156893	C	C	37156893	1	2	72	0	1	0	0	0	0	0	0	0	5107	957	33	4		4	ELMO1	7	37156893	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4099713	37156893	121981770	219	79703											
C7orf10	79783	broad.mit.edu	37	chr7	40868075	40868075	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcatctggagagctggcatAttggggcttccaaagcacct	13	10	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40868075	T	T	40868075	1	4	72	0	1	0	0	0	0	0	0	0	2401	464	16	5		5	C7orf10	7	40868075	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3711182	40868075	118270588	220	79704											
INHBA	3624	broad.mit.edu	37	chr7	41729684	41729684	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgactgctccttttcctcaTctgctcctgccccaccttca	5	19	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41729684	C	C	41729684	3	2	72	1	0	0	0	0	1	0	0	0	7811	1435	50	5	439	5	INHBA	7	41729684	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	861609	41729684	117408979	221	79705											
HECW1	23072	broad.mit.edu	37	chr7	43436498	43436498	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctcaggtatgttttGctcacctgagactttgtgga	9	10	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43436498	C	C	43436498	1	2	72	0	1	0	0	0	0	0	0	0	7109	1334	46	4		4	HECW1	7	43436498	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1706814	43436498	115702165	222	79706											
YKT6	10652	broad.mit.edu	37	chr7	44244335	44244335	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagctttctcctttctacTgggaccctactcctcctcta	4	18	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44244335	G	G	44244335	1	3	72	0	1	0	0	0	0	0	0	0	17612	1595	55	5		5	YKT6	7	44244335	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	807837	44244335	114894328	223	79707											
NUDCD3	23386	broad.mit.edu	37	chr7	44501479	44501479	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaagggaggaaggggtccTggaaggcaaggaggtggacc	21	5	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44501479	A	A	44501479	1	1	72	0	1	0	0	0	0	0	0	0	10819	1595	55	5		5	NUDCD3	7	44501479	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	257144	44501479	114637184	224	79708											
CD36	948	broad.mit.edu	37	chr7	80108073	80108073	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttattttcctcatttgaAtttacaaatgcaaagtatgc	4	7	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80108073	G	G	80108073	1	3	72	0	1	0	0	0	0	0	0	0	3037	116	4	5		5	CD36	7	80108073	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	35606594	80108073	79030590	225	79709											
HGF	3082	broad.mit.edu	37	chr7	81331856	81331856	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgaaatcttcatgtaaaaGacagttgtattggtgggtgc	11	5	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81331856	T	T	81331856	1	4	72	0	1	0	0	0	0	0	0	0	7152	957	33	3		3	HGF	7	81331856	3'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1223783	81331856	77806807	226	79710											
PCLO	27445	broad.mit.edu	37	chr7	82585848	82585848	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaaagtgtctttccttTcttcttgactctctttgatc	4	9	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82585848	C	C	82585848	3	2	72	1	0	0	0	0	1	0	0	0	11677	1783	62	5	11108	5	PCLO	7	82585848	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1253992	82585848	76552815	227	79711											
SEMA3A	10371	broad.mit.edu	37	chr7	83823799	83823799	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aataagatttacctttgtagGataatttcagccttggcaca	7	7	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83823799	C	C	83823799	3	2	72	1	0	0	0	0	1	0	0	0	14137	1174	41	4	2279	4	SEMA3A	7	83823799	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1237951	83823799	75314864	228	79712											
C7orf64	84060	broad.mit.edu	37	chr7	92158932	92158932	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgaatacccagcagaagActttactgaagtttatctta	7	7	1	5			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92158932	C	C	92158932	3	2	72	1	0	0	0	0	1	0	0	0	2435	275	10	5	260	5	C7orf64	7	92158932	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	8335133	92158932	66979731	229	79713											
COL1A2	1278	broad.mit.edu	37	chr7	94055427	94055427	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaatcagtccaaaacatcTgttaagaaaataaacaatat	5	6	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94055427	C	C	94055427	1	2	72	0	1	0	0	0	0	0	0	0	3710	1595	55	5		5	COL1A2	7	94055427	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1896495	94055427	65083236	230	79714											
TRRAP	8295	broad.mit.edu	37	chr7	98602681	98602681	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccgtgacagttcggacattCctagcttcttctcaagacaa	7	13	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98602681	A	A	98602681	1	1	72	0	1	0	0	0	0	0	0	0	16726	870	30	3		3	TRRAP	7	98602681	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4547254	98602681	60535982	231	79715											
PTCD1	26024	broad.mit.edu	37	chr7	99042396	99042396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttgattcctctcctttTctctcctttctacagagtcg	4	14	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99042396	C	C	99042396	1	2	72	0	1	0	0	0	0	0	0	0	12833	1798	62	5		5	PTCD1	7	99042396	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	439715	99042396	60096267	232	79716											
ZAN	7455	broad.mit.edu	37	chr7	100362997	100362997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcctgcccgcccaacagCaagtactccctgtgtgcgaa	10	15	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100362997	A	A	100362997	3	1	72	1	0	0	0	0	1	0	0	0	17640	709	25	3	4376	3	ZAN	7	100362997	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1320601	100362997	58775666	233	79717											
COG5	10466	broad.mit.edu	37	chr7	107181815	107181816	+	Intron	INS	-	C	C													gctgggtgtggtggtgcatgINScccatagtctcagctactca							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107181816	C	C	107181815	6	5	72	0	1	1	1	0	0	0	0	0	3693	1334	46	0		0	COG5	7	107181815	Intron	INS	-	TCGA-17-Z043-01A-01W-0746-08	6818818	107181815	51956848	234	79718											
LAMB4	22798	broad.mit.edu	37	chr7	107728176	107728177	+	Intron	INS	-	C	C													aggagagccactcctcagcaINStttacctctccttactaaaa					rs149843198	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107728177	C	C	107728176	6	5	72	0	1	1	1	0	0	0	0	0	8685	232	8	0		0	LAMB4	7	107728176	Intron	INS	-	TCGA-17-Z043-01A-01W-0746-08	546361	107728176	51410487	235	79719											
SPAM1	6677	broad.mit.edu	37	chr7	123599760	123599760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtacgtggaaaaccgacaCttgaagacctggagcaattt	10	9	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123599760	A	A	123599760	3	1	72	1	0	0	0	0	1	0	0	0	15102	565	20	3	1277	3	SPAM1	7	123599760	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	15871584	123599760	35538903	236	79720											
PLXNA4	91584	broad.mit.edu	37	chr7	131864373	131864373	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaacatatgcatacacatAcacagatgtgcatgcacaca	6	10	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131864373	T	T	131864373	1	4	72	0	1	0	0	0	0	0	0	0	12217	406	14	5		5	PLXNA4	7	131864373	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	8264613	131864373	27274290	237	79721											
AKR1B15	441282	broad.mit.edu	37	chr7	134260733	134260733	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatcttaaaaacattatttTataattggtaaatgtcggta	5	3	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134260733	C	C	134260733	1	2	72	0	1	0	0	0	0	0	0	0	468	1769	61	5		5	AKR1B15	7	134260733	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2396360	134260733	24877930	238	79722											
PARP12	64761	broad.mit.edu	37	chr7	139741316	139741316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctcccaaagcaagtgagCcacactggcacctggggatc	10	13	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139741316	A	A	139741316	1	1	72	0	1	0	0	0	0	0	0	0	11551	754	26	3		3	PARP12	7	139741316	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5480583	139741316	19397347	239	79723											
CNTNAP2	26047	broad.mit.edu	37	chr7	146592419	146592419	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccttcctccgtccttccctCcctcccttcctttctctctc	1	23	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146592419	T	T	146592419	1	4	72	0	1	0	0	0	0	0	0	0	3679	870	30	4		4	CNTNAP2	7	146592419	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6851103	146592419	12546244	240	79724											
DPP6	1804	broad.mit.edu	37	chr7	154183409	154183409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatttttagaagagacaGggttgcaccatgttggtcag	12	5	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154183409	T	T	154183409	1	4	72	0	1	0	0	0	0	0	0	0	4770	1015	35	2		2	DPP6	7	154183409	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	7590990	154183409	4955254	241	79725											
HTR5A	3361	broad.mit.edu	37	chr7	154876127	154876127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaactccttctttaaccCcctgatctatacggctttca	3	16	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154876127	A	A	154876127	3	1	72	1	0	0	0	0	1	0	0	0	7520	623	22	2	1010	2	HTR5A	7	154876127	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	692718	154876127	4262536	242	79726											
UBE3C	9690	broad.mit.edu	37	chr7	156990438	156990438	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacaagactgtacaataaaGttccggacatccaggatcct	9	10	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156990438	C	C	156990438	1	2	72	0	1	0	0	0	0	0	0	0	17007	1044	36	4		4	UBE3C	7	156990438	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2114311	156990438	2148225	243	79727											
FBXO25	26260	broad.mit.edu	37	chr8	413123	413123	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagacacactgcatttctgTcggcactgcagcattctctt	9	12	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	413123	C	C	413123	2	2	72	1	0	0	0	0	0	0	0	1	5793	1673	58	5		5	FBXO25	8	413123	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08		413123	145950899	244	79728											
CSMD1	64478	broad.mit.edu	37	chr8	2820774	2820774	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggatctctcctttccacaCcccgcgaccttcacaggaga	9	16	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2820774	T	T	2820774	3	4	72	1	0	0	0	0	1	0	0	0	3978	507	18	4	1314	4	CSMD1	8	2820774	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2407651	2820774	143543248	245	79729											
CSMD1	64478	broad.mit.edu	37	chr8	4646069	4646069	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaacacatgtatttcctTgaagcaggctgacaagaaaa	8	7	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4646069	G	G	4646069	1	3	72	0	1	0	0	0	0	0	0	0	3978	1827	63	5		5	CSMD1	8	4646069	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1825295	4646069	141717953	246	79730											
ERI1	90459	broad.mit.edu	37	chr8	8875944	8875944	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaggaagattatttttttAtatctactttttaaagatta	4	2	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8875944	C	C	8875944	1	2	72	0	1	0	0	0	0	0	0	0	5269	464	16	5		5	ERI1	8	8875944	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	4229875	8875944	137488078	247	79731											
DEFB136	613210	broad.mit.edu	37	chr8	11832060	11832060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccactgtcttacctgaagGcagtaagatcaccaggaaaa	9	11	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11832060	T	T	11832060	3	4	72	1	0	0	0	0	1	0	0	0	4460	1203	42	3	193	3	DEFB136	8	11832060	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2956116	11832060	134531962	248	79732											
SGCZ	137868	broad.mit.edu	37	chr8	14303587	14303587	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacaagaaaaatcctgaatCagttgtgccattttttcgta	8	7	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14303587	G	G	14303587	1	3	72	0	1	0	0	0	0	0	0	0	14317	841	29	4		4	SGCZ	8	14303587	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2471527	14303587	132060435	249	79733											
MSR1	4481	broad.mit.edu	37	chr8	15987466	15987466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggcaggaaaggtacttGgtactcaggctatggaggaa	15	5	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15987466	T	T	15987466	1	4	72	0	1	0	0	0	0	0	0	0	9980	1363	47	2		2	MSR1	8	15987466	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1683879	15987466	130376556	250	79734											
EBF2	64641	broad.mit.edu	37	chr8	25718470	25718470	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctatctgtggacacactctGttggaccattatgacccaac	7	13	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25718470	C	C	25718470	1	2	72	0	1	0	0	0	0	0	0	0	4921	1392	48	4		4	EBF2	8	25718470	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	9731004	25718470	120645552	251	79735											
EBF2	64641	broad.mit.edu	37	chr8	25899680	25899680	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctggccctgcctgtcataGagcgccaggacgaagtgaaa	14	11	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25899680	T	T	25899680	2	4	72	1	0	0	0	0	0	0	0	1	4921	929	33	3		3	EBF2	8	25899680	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	181210	25899680	120464342	252	79736											
CLU	1191	broad.mit.edu	37	chr8	27467841	27467841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagctgaggctcagagtgGgcccagacacaggcacccag	15	13	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27467841	T	T	27467841	1	4	72	0	1	0	0	0	0	0	0	0	3600	1247	43	2		2	CLU	8	27467841	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1568161	27467841	118896181	253	79737											
CLU	1191	broad.mit.edu	37	chr8	27472255	27472255	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgccgtatttatagcgctcTgctcgcgcacacaccccctt	8	17	1	0	rs2077086		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27472255	C	C	27472255	3	2	72	1	0	0	0	0	1	0	0	0	3600	1580	55	5	1505	5	CLU	8	27472255	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4414	27472255	118891767	254	79738											
UNC5D	137970	broad.mit.edu	37	chr8	35616848	35616848	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcctataggaagtggtttCagatgaaaggcatcaaggtg	12	6	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35616848	T	T	35616848	3	4	72	1	0	0	0	0	1	0	0	0	17121	838	29	4	2228	4	UNC5D	8	35616848	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8144593	35616848	110747174	255	79739											
HOOK3	84376	broad.mit.edu	37	chr8	42821773	42821773	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaggtaaaaacctcaccttCaccgcccagcacagtttggc	8	14	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42821773	T	T	42821773	1	4	72	0	1	0	0	0	0	0	0	0	7351	841	29	4		4	HOOK3	8	42821773	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	7204925	42821773	103542249	256	79740											
PREX2	80243	broad.mit.edu	37	chr8	69015124	69015124	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgacctggatgaatcttaaGcgagatgtttttctctgtgg	11	6	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69015124	C	C	69015124	1	2	72	0	1	0	0	0	0	0	0	0	12583	986	34	4		4	PREX2	8	69015124	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	26193351	69015124	77348898	257	79741											
TRPA1	8989	broad.mit.edu	37	chr8	72975681	72975681	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatttatagtatataacataGaaaagcctcaactcaccaaa	3	8	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72975681	T	T	72975681	1	4	72	0	1	0	0	0	0	0	0	0	16702	957	33	3		3	TRPA1	8	72975681	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	3960557	72975681	73388341	258	79742											
SLC26A7	115111	broad.mit.edu	37	chr8	92407523	92407523	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttgttagtaagaagattCgcttagttattttatgtaaa	7	2	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92407523	A	A	92407523	1	1	72	0	1	0	0	0	0	0	0	0	14636	899	31	3		3	SLC26A7	8	92407523	3'UTR	SNP	C	TCGA-17-Z043-01A-01W-0746-08	19431842	92407523	53956499	259	79743											
PDP1	54704	broad.mit.edu	37	chr8	94935198	94935198	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgcaggaagaggacggctCatggtcagcagtcacgctgt	15	9	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94935198	T	T	94935198	3	4	72	1	0	0	0	0	1	0	0	0	11779	838	29	4	1094	4	PDP1	8	94935198	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2527675	94935198	51428824	260	79744											
RGS22	26166	broad.mit.edu	37	chr8	101078438	101078438	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttaagtttgttgtagggTacacaacagggtaacgaaaa	11	4	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101078438	C	C	101078438	2	2	72	1	0	0	0	0	0	0	0	1	13414	1625	57	5		5	RGS22	8	101078438	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	6143240	101078438	45285584	261	79745											
CSMD3	114788	broad.mit.edu	37	chr8	113276091	113276091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgttgaaatatcctgagCcttaaagatataaataaata	6	5	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113276091	A	A	113276091	1	1	72	0	1	0	0	0	0	0	0	0	3980	754	26	3		3	CSMD3	8	113276091	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	12197653	113276091	33087931	262	79746											
FAM135B	51059	broad.mit.edu	37	chr8	139152544	139152544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggacagtggcagaggcCtggaagattgcagggacaag	18	7	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139152544	A	A	139152544	1	1	72	0	1	0	0	0	0	0	0	0	5495	696	24	2		2	FAM135B	8	139152544	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	25876453	139152544	7211478	263	79747											
COL22A1	169044	broad.mit.edu	37	chr8	139889948	139889948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccgtgggctcagcagggGgcgtcactcttgggaggggc	18	12	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139889948	T	T	139889948	1	4	72	0	1	0	0	0	0	0	0	0	3713	1247	43	2		2	COL22A1	8	139889948	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	737404	139889948	6474074	264	79748											
GLI4	2738	broad.mit.edu	37	chr8	144351444	144351444	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaacctccatctccccttgGagagctggcatgttgcctcc	8	15	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144351444	T	T	144351444	1	4	72	0	1	0	0	0	0	0	0	0	6504	1189	41	3		3	GLI4	8	144351444	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4461496	144351444	2012578	265	79749											
PUF60	22827	broad.mit.edu	37	chr8	144898802	144898802	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatggccttatgagtctcaGaggctatggaaaactccaca	11	9	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144898802	A	A	144898802	3	1	72	1	0	0	0	0	1	0	0	0	12932	942	33	4	115	4	PUF60	8	144898802	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	547358	144898802	1465220	266	79750											
IFNA16	3449	broad.mit.edu	37	chr9	21217301	21217301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaaagaaaaggacagggCcattgggatgttgcaaatat	12	5	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21217301	A	A	21217301	3	1	72	1	0	0	0	0	1	0	0	0	7605	739	26	3	569	3	IFNA16	9	21217301	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08		21217301	119996130	267	79751											
C9orf72	203228	broad.mit.edu	37	chr9	27565490	27565490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccttatacagatacatgcTgtgagaaaaacatttgacag	7	7	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27565490	A	A	27565490	1	1	72	0	1	0	0	0	0	0	0	0	2521	1595	55	5		5	C9orf72	9	27565490	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	6348189	27565490	113647941	268	79752											
GALT	2592	broad.mit.edu	37	chr9	34648625	34648625	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtgacttagactcgggtGgttagtggtagaggtggtga	18	3	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648625	A	A	34648625	1	1	72	0	1	0	0	0	0	0	0	0	6292	1363	47	4		4	GALT	9	34648625	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	7083135	34648625	106564806	269	79753											
KIAA1539	80256	broad.mit.edu	37	chr9	35107982	35107982	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcctaagagccccacagtaGatggttcttcagggggtagt	14	9	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35107982	A	A	35107982	3	1	72	1	0	0	0	0	1	0	0	0	8312	942	33	4	1354	4	KIAA1539	9	35107982	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	459357	35107982	106105449	270	79754											
FRMPD1	22844	broad.mit.edu	37	chr9	37708556	37708556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattatcaaagaacaaagatGggcaacaggaatggcataac	10	6	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37708556	T	T	37708556	1	4	72	0	1	0	0	0	0	0	0	0	6117	1363	47	2		2	FRMPD1	9	37708556	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2600574	37708556	103504875	271	79755											
PRUNE2	158471	broad.mit.edu	37	chr9	79326184	79326184	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaagtcactgaagggtcctCttgttggtacaccaggatct	10	10	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79326184	T	T	79326184	3	4	72	1	0	0	0	0	1	0	0	0	12747	922	32	4	8308	4	PRUNE2	9	79326184	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	41617628	79326184	61887247	272	79756											
GKAP1	80318	broad.mit.edu	37	chr9	86357514	86357514	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtatttctgccttatctttCactgacaaaaaaggaaaaac	5	8	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86357514	T	T	86357514	3	4	72	1	0	0	0	0	1	0	0	0	6487	840	29	4	206	4	GKAP1	9	86357514	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	7031330	86357514	54855917	273	79757											
FAM75C1	441452	broad.mit.edu	37	chr9	90537780	90537780	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggactcctcaacttacCccaggcagaaaaacagaaga	8	11	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90537780	T	T	90537780	2	4	72	1	0	0	0	0	0	0	0	1	5676	610	22	4		4	FAM75C1	9	90537780	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4180266	90537780	50675651	274	79758											
IARS	3376	broad.mit.edu	37	chr9	95015646	95015646	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcagtctgcacttacctTtaatcttctgcggttcattc	6	12	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95015646	G	G	95015646	3	3	72	1	0	0	0	0	1	0	0	0	7543	1850	64	5	1617	5	IARS	9	95015646	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4477866	95015646	46197785	275	79759											
FGD3	89846	broad.mit.edu	37	chr9	95776272	95776272	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccccccaggaccgccacCtcttcctggtgagcctggcc	10	20	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95776272	T	T	95776272	3	4	72	1	0	0	0	0	1	0	0	0	5891	681	24	4	1200	4	FGD3	9	95776272	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	760626	95776272	45437159	276	79760											
GABBR2	9568	broad.mit.edu	37	chr9	101073563	101073563	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtccttatctgagagccCttttccctcctgtgagccat	9	13	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101073563	T	T	101073563	1	4	72	0	1	0	0	0	0	0	0	0	6216	696	24	4		4	GABBR2	9	101073563	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5297291	101073563	40139868	277	79761											
GALNT12	79695	broad.mit.edu	37	chr9	101599398	101599398	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatggatgaatttaaagagCtctactaccatcgcaacccc	8	11	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101599398	G	G	101599398	3	3	72	1	0	0	0	0	1	0	0	0	6272	797	28	4	1202	4	GALNT12	9	101599398	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	525835	101599398	39614033	278	79762											
COL15A1	1306	broad.mit.edu	37	chr9	101806867	101806867	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcgagaagggagagccGggtgccatcctgacagagga	18	9	0	4	rs138283764	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101806867	A	A	101806867	2	1	72	1	0	0	0	0	0	0	0	1	3704	1103	39	4		4	COL15A1	9	101806867	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	207469	101806867	39406564	279	79763											
TMEFF1	8577	broad.mit.edu	37	chr9	103207531	103207531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaaaggtggaaaatctGctatagagttatggccctca	11	6	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103207531	T	T	103207531	1	4	72	0	1	0	0	0	0	0	0	0	16136	1334	46	3		3	TMEFF1	9	103207531	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1400664	103207531	38005900	280	79764											
ZNF483	158399	broad.mit.edu	37	chr9	114304933	114304933	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaacatcagagaattcAtactggagagaaaccctata	6	9	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114304933	G	G	114304933	3	3	72	1	0	0	0	0	1	0	0	0	18063	217	8	5	1736	5	ZNF483	9	114304933	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	11097402	114304933	26908498	281	79765											
COL27A1	85301	broad.mit.edu	37	chr9	116931659	116931659	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccggcccacgagcagtggCtattcgatcttccacctggc	10	17	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116931659	A	A	116931659	2	1	72	1	0	0	0	0	0	0	0	1	3717	784	28	3		3	COL27A1	9	116931659	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2626726	116931659	24281772	282	79766											
ORM1	5004	broad.mit.edu	37	chr9	117085901	117085901	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagctgacagtcaaagatTcagcatcaagcccccatcac	6	16	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117085901	A	A	117085901	1	1	72	0	1	0	0	0	0	0	0	0	11361	1798	62	5		5	ORM1	9	117085901	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	154242	117085901	24127530	283	79767											
DFNB31	25861	broad.mit.edu	37	chr9	117168637	117168637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccttgctgtactcactgCgcgtctggggcagcgccctc	13	15	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117168637	A	A	117168637	3	1	72	1	0	0	0	0	1	0	0	0	4495	768	27	3	505	3	DFNB31	9	117168637	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	82736	117168637	24044794	284	79768											
TNC	3371	broad.mit.edu	37	chr9	117848545	117848545	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcttcccctgtgtagccgtCatcacaaacacacatgccat	6	15	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117848545	T	T	117848545	3	4	72	1	0	0	0	0	1	0	0	0	16393	826	29	4	5244	4	TNC	9	117848545	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	679908	117848545	23364886	285	79769											
ASTN2	23245	broad.mit.edu	37	chr9	120065888	120065888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcattcctccatgtgccCctgcctttatgctcatagat	6	14	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120065888	A	A	120065888	1	1	72	0	1	0	0	0	0	0	0	0	1069	638	22	2		2	ASTN2	9	120065888	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2217343	120065888	21147543	286	79770											
MRRF	92399	broad.mit.edu	37	chr9	125033404	125033404	+	Intron	DEL	C	-	-													cacccctttcttatagttggCccttgaattatagctggcag							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125033404	-	-	125033404	6	5	72	0	1	1	0	1	0	0	0	0	9944	754	26	0		0	MRRF	9	125033404	Intron	DEL	C	TCGA-17-Z043-01A-01W-0746-08	4967516	125033404	16180027	287	79771											
RABGAP1	23637	broad.mit.edu	37	chr9	125791955	125791955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttggccttgcccccGggtttgttcactgggtcttt	10	11	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125791955	T	T	125791955	1	4	72	0	1	0	0	0	0	0	0	0	13072	1131	39	1		1	RABGAP1	9	125791955	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	758551	125791955	15421476	288	79772											
TBC1D13	54662	broad.mit.edu	37	chr9	131568117	131568117	+	Intron	DEL	C	-	-													acacagagtcatgccccccaCcccccacgctgtctccccag							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131568117	-	-	131568117	6	5	72	0	1	1	0	1	0	0	0	0	15721	522	18	0		0	TBC1D13	9	131568117	Intron	DEL	C	TCGA-17-Z043-01A-01W-0746-08	5776162	131568117	9645314	289	79773											
BARHL1	56751	broad.mit.edu	37	chr9	135464768	135464768	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgctctacctgtaccgCggccccagcgcgccgccgcc	13	21	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135464768	A	A	135464768	2	1	72	1	0	0	0	0	0	0	0	1	1318	755	27	3		3	BARHL1	9	135464768	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3896651	135464768	5748663	290	79774											
KIAA1984	84960	broad.mit.edu	37	chr9	139697638	139697638	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcttggatcttcggatgGggtcaaggtgagctcagggc	15	10	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139697638	A	A	139697638	1	1	72	0	1	0	0	0	0	0	0	0	8336	1247	43	4		4	KIAA1984	9	139697638	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4232870	139697638	1515793	291	79775											
PNPLA7	375775	broad.mit.edu	37	chr9	140358756	140358756	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaggaggggacaggcacTgggggctgcatgggctcctg	20	10	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140358756	C	C	140358756	1	2	72	0	1	0	0	0	0	0	0	0	12265	1595	55	5		5	PNPLA7	9	140358756	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	661118	140358756	854675	292	79776											
EHMT1	79813	broad.mit.edu	37	chr9	140693353	140693353	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctttcaaatggacagatggAcgtcaactgtcaggtacagc	11	9	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140693353	T	T	140693353	3	4	72	1	0	0	0	0	1	0	0	0	5023	275	10	5	2709	5	EHMT1	9	140693353	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	334597	140693353	520078	293	79777											
CACNA1B	774	broad.mit.edu	37	chr9	140948493	140948493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaaggtgggacacacaGccccatgatgcagacaacac	12	12	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140948493	T	T	140948493	1	4	72	0	1	0	0	0	0	0	0	0	2565	986	34	3		3	CACNA1B	9	140948493	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	255140	140948493	264938	294	79778											
UPF2	26019	broad.mit.edu	37	chr10	12043820	12043820	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttattctccttagattctttTgcctctgttgaaaaacaaac	4	9	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12043820	A	A	12043820	2	1	72	1	0	0	0	0	0	0	0	1	17130	1799	63	5		5	UPF2	10	12043820	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08		12043820	123490927	295	79779											
PTER	9317	broad.mit.edu	37	chr10	16526695	16526695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacaaccactgggattagCcgagacacacagacgttgaa	9	11	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16526695	A	A	16526695	3	1	72	1	0	0	0	0	1	0	0	0	12845	738	26	3	314	3	PTER	10	16526695	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4482875	16526695	119008052	296	79780											
GJD4	219770	broad.mit.edu	37	chr10	35896885	35896885	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctacatcatccacctcctCctccggaccctgctggaggc	9	18	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35896885	A	A	35896885	2	1	72	1	0	0	0	0	0	0	0	1	6483	842	30	3		3	GJD4	10	35896885	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	19370190	35896885	99637862	297	79781											
BMS1	9790	broad.mit.edu	37	chr10	43294285	43294285	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacatggcccacagaggaCaggttcagctttcagtgtgg	13	9	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43294285	T	T	43294285	1	4	72	0	1	0	0	0	0	0	0	0	1478	493	17	4		4	BMS1	10	43294285	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	7397400	43294285	92240462	298	79782											
ALOX5	240	broad.mit.edu	37	chr10	45924225	45924225	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatccaggtaggctgctggGgggcacacctttctgagcag	14	12	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45924225	A	A	45924225	1	1	72	0	1	0	0	0	0	0	0	0	540	1247	43	4		4	ALOX5	10	45924225	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2629940	45924225	89610522	299	79783											
C10orf128	170371	broad.mit.edu	37	chr10	50369035	50369035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgggtttggcacatgcaAggggcatgaggtgaggaaaa	17	5	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50369035	G	G	50369035	1	3	72	0	1	0	0	0	0	0	0	0	1603	87	3	5		5	C10orf128	10	50369035	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	4444810	50369035	85165712	300	79784											
C10orf128	170371	broad.mit.edu	37	chr10	50386199	50386199	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccaatgtcctcccagggctCatcaagccctcctcttttgc	6	18	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50386199	A	A	50386199	1	1	72	0	1	0	0	0	0	0	0	0	1603	841	29	3		3	C10orf128	10	50386199	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	17164	50386199	85148548	301	79785											
PRKG1	5592	broad.mit.edu	37	chr10	53798767	53798767	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccttgggctggtcagtctGaggacctgaggtcgtaggtg	16	8	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53798767	C	C	53798767	1	2	72	0	1	0	0	0	0	0	0	0	12628	1305	45	4		4	PRKG1	10	53798767	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	3412568	53798767	81735980	302	79786											
PCDH15	65217	broad.mit.edu	37	chr10	55581630	55581630	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaacattacagtgaagtAgattgactgtgagattgttt	10	4	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55581630	C	C	55581630	2	2	72	1	0	0	0	0	0	0	0	1	11605	407	15	5		5	PCDH15	10	55581630	Silent	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1782863	55581630	79953117	303	79787											
BICC1	80114	broad.mit.edu	37	chr10	60559947	60559947	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacattattttctattattAttttagtctccagatataaa	2	5	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60559947	G	G	60559947	1	3	72	0	1	0	0	0	0	0	0	0	1433	464	16	5		5	BICC1	10	60559947	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	4978317	60559947	74974800	304	79788											
ANK3	288	broad.mit.edu	37	chr10	61978457	61978457	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggttacctggcccttttctCtggctgcccttaacagtttt	8	12	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61978457	G	G	61978457	1	3	72	0	1	0	0	0	0	0	0	0	622	928	32	4		4	ANK3	10	61978457	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1418510	61978457	73556290	305	79789											
CCAR1	55749	broad.mit.edu	37	chr10	70532887	70532887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttatttattacttcttaGagttaagaatacattttttg	4	3	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70532887	C	C	70532887	1	2	72	0	1	0	0	0	0	0	0	0	2756	957	33	4		4	CCAR1	10	70532887	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	8554430	70532887	65001860	306	79790											
LRRC20	55222	broad.mit.edu	37	chr10	72061136	72061136	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggggggctcttgcgccttCcggagacatgagcatgtcaa	14	10	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72061136	A	A	72061136	4	1	72	1	0	0	0	0	0	1	0	0	9064	864	30	3	29	3	LRRC20	10	72061136	Nonsense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1528249	72061136	63473611	307	79791											
ANXA7	310	broad.mit.edu	37	chr10	75157963	75157963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggataggatggagctccccCtggctgtggggcaccaggat	17	10	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75157963	A	A	75157963	3	1	72	1	0	0	0	0	1	0	0	0	723	681	24	2	1279	2	ANXA7	10	75157963	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3096827	75157963	60376784	308	79792											
PPP3CB	5532	broad.mit.edu	37	chr10	75238254	75238254	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgacagtttatgattatTacctctatactaaaataacc	3	7	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75238254	G	G	75238254	1	3	72	0	1	0	0	0	0	0	0	0	12499	1769	61	5		5	PPP3CB	10	75238254	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	80291	75238254	60296493	309	79793											
KCNMA1	3778	broad.mit.edu	37	chr10	79306061	79306061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcctccactgaattccCagctcactgcctcccactag	4	20	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79306061	A	A	79306061	1	1	72	0	1	0	0	0	0	0	0	0	8143	609	21	2		2	KCNMA1	10	79306061	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4067807	79306061	56228686	310	79794											
ZMIZ1	57178	broad.mit.edu	37	chr10	81053440	81053440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgggagcctgggaggtGggaactgggacacctgggct	20	8	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81053440	T	T	81053440	1	4	72	0	1	0	0	0	0	0	0	0	17822	1363	47	2		2	ZMIZ1	10	81053440	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1747379	81053440	54481307	311	79795											
GHITM	27069	broad.mit.edu	37	chr10	85908427	85908427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattgtacttcaaacctgtGggtttctgctttgttttcat	7	7	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85908427	T	T	85908427	1	4	72	0	1	0	0	0	0	0	0	0	6434	1363	47	2		2	GHITM	10	85908427	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4854987	85908427	49626320	312	79796											
TLL2	7093	broad.mit.edu	37	chr10	98173110	98173110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacagaaaaagaaaagtcaAggccatcaggctgtctgtgc	11	8	3	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98173110	T	T	98173110	1	4	72	0	1	0	0	0	0	0	0	0	16069	87	3	5		5	TLL2	10	98173110	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	12264683	98173110	37361637	313	79797											
CRTAC1	55118	broad.mit.edu	37	chr10	99771121	99771121	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaagtgacaaatgttacCgaaagaacctgtaaccaaag	7	9	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771121	A	A	99771121	1	1	72	0	1	0	0	0	0	0	0	0	3928	667	23	1		1	CRTAC1	10	99771121	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1598011	99771121	35763626	314	79798											
CPN1	1369	broad.mit.edu	37	chr10	101829549	101829549	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttatagtagatataggtattGagatcagggaagttgcggtt	13	2	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101829549	T	T	101829549	2	4	72	1	0	0	0	0	0	0	0	1	3841	1277	45	3		3	CPN1	10	101829549	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2058428	101829549	33705198	315	79799											
C10orf26	54838	broad.mit.edu	37	chr10	104569445	104569445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcattcttacattcctgcCcacttctatcccatgtgtct	3	15	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104569445	A	A	104569445	1	1	72	0	1	0	0	0	0	0	0	0	1610	638	22	2		2	C10orf26	10	104569445	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2739896	104569445	30965302	316	79800											
SORCS1	114815	broad.mit.edu	37	chr10	108531574	108531574	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatcctcacataggcccttCagaggccaagtccagctcct	7	16	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108531574	A	A	108531574	1	1	72	0	1	0	0	0	0	0	0	0	15044	841	29	3		3	SORCS1	10	108531574	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3962129	108531574	27003173	317	79801											
C10orf96	374355	broad.mit.edu	37	chr10	118138000	118138001	+	Missense_Mutation	DNP	CA	AG	AG													tgtttatgaagctctccaaaCagaaatagaatttttggagt							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	118138001	AG	AG	118138000	3	1	72	1	0	0	0	0	1	0	0	0	1638	478	17	3	745	3	C10orf96	10	118138000	Missense_Mutation	DNP	CA	TCGA-17-Z043-01A-01W-0746-08	9606426	118138000	17396747	318	79802											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119805399	119805399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaaaaatttatccagaccCaccagggacctgtgcataac	6	13	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119805399	A	A	119805399	2	1	72	1	0	0	0	0	0	0	0	1	13002	581	21	2		2	RAB11FIP2	10	119805399	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1667399	119805399	15729348	319	79803											
PSMD13	5719	broad.mit.edu	37	chr11	251788	251788	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgggggtgtgtcaggctatCttgtcttacacacgcctccc	11	12	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	251788	T	T	251788	1	4	72	0	1	0	0	0	0	0	0	0	12802	928	32	4		4	PSMD13	11	251788	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		251788	134754728	320	79804											
NLRP6	171389	broad.mit.edu	37	chr11	282701	282701	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccttcctctctctcccaGcagttctcaaggcaccacaa	4	18	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	282701	T	T	282701	5	4	72	1	0	0	0	0	0	0	1	0	10576	985	34	3	2123	3	NLRP6	11	282701	Splice_Site	SNP	G	TCGA-17-Z043-01A-01W-0746-08	30913	282701	134723815	321	79805											
ARFIP2	23647	broad.mit.edu	37	chr11	6502634	6502634	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagggcggagctgacgtcgCagccagggcagggcgatact	17	10	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6502634	A	A	6502634	1	1	72	0	1	0	0	0	0	0	0	0	857	725	25	3		3	ARFIP2	11	6502634	5'Flank	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6219933	6502634	128503882	322	79806											
ZNF214	7761	broad.mit.edu	37	chr11	7021065	7021065	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggttaggtaaactttgaTtaaagctgttaactaaatga	8	3	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7021065	C	C	7021065	1	2	72	0	1	0	0	0	0	0	0	0	17896	1508	52	5		5	ZNF214	11	7021065	3'UTR	SNP	T	TCGA-17-Z043-01A-01W-0746-08	518431	7021065	127985451	323	79807											
NLRP14	338323	broad.mit.edu	37	chr11	7067771	7067771	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtggactgtgcccacggTggagctgcactggatgctct	15	11	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7067771	A	A	7067771	1	1	72	0	1	0	0	0	0	0	0	0	10571	1711	59	5		5	NLRP14	11	7067771	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	46706	7067771	127938745	324	79808											
CYB5R2	51700	broad.mit.edu	37	chr11	7693706	7693706	+	Frame_Shift_Del	DEL	C	-	-													aggaagccctaagacatggtCcggcgaaggcagtccaaagc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7693706	-	-	7693706	7	5	72	1	0	1	0	1	0	0	0	0	4160	855	30	0	731	0	CYB5R2	11	7693706	Frame_Shift_Del	DEL	C	TCGA-17-Z043-01A-01W-0746-08	625935	7693706	127312810	325	79809											
COPB1	1315	broad.mit.edu	37	chr11	14496148	14496148	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccatccagaaggaatcCtctcaagggaggtctgcaaa	9	11	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14496148	A	A	14496148	4	1	72	1	0	0	0	0	0	1	0	0	3760	690	24	2	1267	2	COPB1	11	14496148	Nonsense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6802442	14496148	120510368	326	79810											
SAAL1	113174	broad.mit.edu	37	chr11	18112007	18112007	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttccagcagagtaggtggGtctgaatcatacaaacagtg	12	7	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18112007	C	C	18112007	3	2	72	1	0	0	0	0	1	0	0	0	13912	1252	44	4	1009	4	SAAL1	11	18112007	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	3615859	18112007	116894509	327	79811											
ANO5	203859	broad.mit.edu	37	chr11	22239977	22239977	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactgaagtttaagaatagTgattcttaatttgttctgga	8	4	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22239977	A	A	22239977	1	1	72	0	1	0	0	0	0	0	0	0	700	1711	59	5		5	ANO5	11	22239977	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4127970	22239977	112766539	328	79812											
GAS2	2620	broad.mit.edu	37	chr11	22777508	22777508	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcattagggtaaagttTtacttttcacttatcttgtt	5	7	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22777508	C	C	22777508	1	2	72	0	1	0	0	0	0	0	0	0	6307	1856	64	5		5	GAS2	11	22777508	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	537531	22777508	112229008	329	79813											
TTC17	55761	broad.mit.edu	37	chr11	43469378	43469378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagatgatctttagttccAttgcataatgacgagatttt	8	6	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43469378	G	G	43469378	1	3	72	0	1	0	0	0	0	0	0	0	16810	232	8	5		5	TTC17	11	43469378	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	20691870	43469378	91537138	330	79814											
PEX16	9409	broad.mit.edu	37	chr11	45937961	45937961	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatgctctgctcagacacCcacagactatgtggaaacca	7	14	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45937961	T	T	45937961	1	4	72	0	1	0	0	0	0	0	0	0	11838	638	22	4		4	PEX16	11	45937961	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2468583	45937961	89068555	331	79815											
ZNF408	79797	broad.mit.edu	37	chr11	46722553	46722553	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtttcctggaggagctgaGaagaggaagctcacttccgg	14	9	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46722553	A	A	46722553	1	1	72	0	1	0	0	0	0	0	0	0	18015	957	33	4		4	ZNF408	11	46722553	5'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	784592	46722553	88283963	332	79816											
AGBL2	79841	broad.mit.edu	37	chr11	47681676	47681676	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccattataaaatgtgtctAatctcaaaacccccgatgaa	4	12	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47681676	T	T	47681676	1	4	72	0	1	0	0	0	0	0	0	0	376	377	13	5		5	AGBL2	11	47681676	3'UTR	SNP	A	TCGA-17-Z043-01A-01W-0746-08	959123	47681676	87324840	333	79817											
OR5D14	219436	broad.mit.edu	37	chr11	55563066	55563066	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaatctgagcatggagcCcacctttgcccttttaggtt	10	10	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563066	T	T	55563066	3	4	72	1	0	0	0	0	1	0	0	0	11249	623	22	4	37	4	OR5D14	11	55563066	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	7881390	55563066	79443450	334	79818											
OR5D14	219436	broad.mit.edu	37	chr11	55563948	55563948	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggatgctttctggaagtTaatacatacacaagttccat	8	7	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55563948	G	G	55563948	4	3	72	1	0	0	0	0	0	1	0	0	11249	1764	61	5	919	5	OR5D14	11	55563948	Nonsense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	882	55563948	79442568	335	79819											
OR5D18	219438	broad.mit.edu	37	chr11	55587309	55587309	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttcctcagccaactctcCtttgtggatttctgctattc	5	12	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55587309	G	G	55587309	2	3	72	1	0	0	0	0	0	0	0	1	11251	668	24	4		4	OR5D18	11	55587309	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	23361	55587309	79419207	336	79820											
OR5L2	26338	broad.mit.edu	37	chr11	55595206	55595206	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggatcctcttctatagatCtaatgtgattaaccacttct	5	9	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595206	A	A	55595206	3	1	72	1	0	0	0	0	1	0	0	0	11265	913	32	3	514	3	OR5L2	11	55595206	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	7897	55595206	79411310	337	79821											
SPRYD5	84767	broad.mit.edu	37	chr11	55653094	55653094	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacaacgcggcagagaaacCtcaacactgacatttgtttg	9	10	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55653094	T	T	55653094	3	4	72	1	0	0	0	0	1	0	0	0	15229	681	24	4	192	4	SPRYD5	11	55653094	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	57888	55653094	79353422	338	79822											
OR5J2	282775	broad.mit.edu	37	chr11	55944493	55944493	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagtcccttgctttacactGtagccatgtctgatagaaag	9	9	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55944493	C	C	55944493	3	2	72	1	0	0	0	0	1	0	0	0	11259	1377	48	4	402	4	OR5J2	11	55944493	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	291399	55944493	79062023	339	79823											
OR5M11	219487	broad.mit.edu	37	chr11	56310716	56310716	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaattctgtgattgcactGccatttgtgttggacatttc	9	7	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56310716	T	T	56310716	2	4	72	1	0	0	0	0	0	0	0	1	11268	1306	46	3		3	OR5M11	11	56310716	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	366223	56310716	78695800	340	79824											
OR10Q1	219960	broad.mit.edu	37	chr11	57995621	57995621	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggaaggagcaggtggagaAggcccggcggcggccctcgg	21	10	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57995621	G	G	57995621	3	3	72	1	0	0	0	0	1	0	0	0	11010	72	3	5	236	5	OR10Q1	11	57995621	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1684905	57995621	77010895	341	79825											
OR5A2	219981	broad.mit.edu	37	chr11	59189969	59189969	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caatgaaagaactaaggaatCcacccacataggcgccaacc	7	13	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59189969	G	G	59189969	3	3	72	1	0	0	0	0	1	0	0	0	11234	855	30	4	518	4	OR5A2	11	59189969	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1194348	59189969	75816547	342	79826											
PATL1	219988	broad.mit.edu	37	chr11	59419010	59419010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacagacaattgtgttgaCacttacatcatcctcactcc	4	12	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59419010	A	A	59419010	1	1	72	0	1	0	0	0	0	0	0	0	11569	493	17	3		3	PATL1	11	59419010	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	229041	59419010	75587506	343	79827											
BRMS1	25855	broad.mit.edu	37	chr11	66108603	66108603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaaagggcaaggccgggCaggaacgagagaggaagggg	21	6	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66108603	A	A	66108603	1	1	72	0	1	0	0	0	0	0	0	0	1525	725	25	3		3	BRMS1	11	66108603	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6689593	66108603	68897913	344	79828											
C11orf80	79703	broad.mit.edu	37	chr11	66589945	66589945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaattgttgaaatcctGctctgatggaaatgtgtggg	14	4	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66589945	T	T	66589945	1	4	72	0	1	0	0	0	0	0	0	0	1676	1334	46	3		3	C11orf80	11	66589945	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	481342	66589945	68416571	345	79829											
ODZ4	26011	broad.mit.edu	37	chr11	78413642	78413642	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgaaagagctgccactgaGacatgtgatggtctcattag	11	8	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78413642	C	C	78413642	1	2	72	0	1	0	0	0	0	0	0	0	10932	957	33	4		4	ODZ4	11	78413642	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	11823697	78413642	56592874	346	79830											
PRCP	5547	broad.mit.edu	37	chr11	82597477	82597477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagaccacaggtgcacaCcaccatgcctggctaatttt	9	13	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82597477	A	A	82597477	1	1	72	0	1	0	0	0	0	0	0	0	12555	522	18	3		3	PRCP	11	82597477	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	4183835	82597477	52409039	347	79831											
PANX1	24145	broad.mit.edu	37	chr11	93886744	93886744	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgggcggctgttcagcAgaagaactcactgcagagcg	14	10	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93886744	G	G	93886744	3	3	72	1	0	0	0	0	1	0	0	0	11514	188	7	5	275	5	PANX1	11	93886744	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	11289267	93886744	41119772	348	79832											
NNMT	4837	broad.mit.edu	37	chr11	114182962	114182962	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggaacctcggcagcctActgaagccagggggcttcct	12	14	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114182962	T	T	114182962	2	4	72	1	0	0	0	0	0	0	0	1	10604	378	14	5		5	NNMT	11	114182962	Silent	SNP	A	TCGA-17-Z043-01A-01W-0746-08	20296218	114182962	20823554	349	79833											
FAM55D	54827	broad.mit.edu	37	chr11	114442052	114442052	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatggcccgggtgaggtActccatctctttgactgaat	11	10	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114442052	T	T	114442052	3	4	72	1	0	0	0	0	1	0	0	0	5638	391	14	5	395	5	FAM55D	11	114442052	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	259090	114442052	20564464	350	79834											
OR8D2	283160	broad.mit.edu	37	chr11	124189502	124189502	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctccaataatgaacagcaGaatctcattgatgtgggtgc	9	9	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124189502	A	A	124189502	2	1	72	1	0	0	0	0	0	0	0	1	11326	933	33	4		4	OR8D2	11	124189502	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	9747450	124189502	10817014	351	79835											
NTM	50863	broad.mit.edu	37	chr11	132124490	132124490	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattcctttaattttctttGacctctttgtatatttttct	2	8	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132124490	T	T	132124490	1	4	72	0	1	0	0	0	0	0	0	0	10794	1305	45	3		3	NTM	11	132124490	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	7934988	132124490	2882026	352	79836											
SLC6A12	6539	broad.mit.edu	37	chr12	311924	311924	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtgttccaaaagttgtTgcaggtcgtccagggcagct	12	10	0	0	rs144464466		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	311924	C	C	311924	3	2	72	1	0	0	0	0	1	0	0	0	14789	1812	63	5	1420	5	SLC6A12	12	311924	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08		311924	133539971	353	79837											
TULP3	7289	broad.mit.edu	37	chr12	3043522	3043522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagacatttggaaaacagGcaaataggcttccattttcc	8	8	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3043522	T	T	3043522	1	4	72	0	1	0	0	0	0	0	0	0	16901	1218	42	3		3	TULP3	12	3043522	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2731598	3043522	130808373	354	79838											
NTF3	4908	broad.mit.edu	37	chr12	5585594	5585594	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcaaattgttgatctacAgtaagggctgagcagagcag	13	6	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5585594	T	T	5585594	1	4	72	0	1	0	0	0	0	0	0	0	10791	203	7	5		5	NTF3	12	5585594	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	2542072	5585594	128266301	355	79839											
NCAPD2	9918	broad.mit.edu	37	chr12	6626381	6626381	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggactgtaatgtgtcttAccactacaaggagtactcct	8	9	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6626381	G	G	6626381	1	3	72	0	1	0	0	0	0	0	0	0	10300	406	14	5		5	NCAPD2	12	6626381	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1040787	6626381	127225514	356	79840											
GDF3	9573	broad.mit.edu	37	chr12	7843254	7843254	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaagtagaggagcttctgCaggcaggaggaagcttggga	16	5	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7843254	T	T	7843254	2	4	72	1	0	0	0	0	0	0	0	1	6379	697	25	4		4	GDF3	12	7843254	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1216873	7843254	126008641	357	79841											
GRIN2B	2904	broad.mit.edu	37	chr12	13717204	13717204	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccaatactatggggccGgtggtgatggtggtagtgat	16	6	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13717204	T	T	13717204	2	4	72	1	0	0	0	0	0	0	0	1	6846	1115	39	1		1	GRIN2B	12	13717204	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5873950	13717204	120134691	358	79842											
MGP	4256	broad.mit.edu	37	chr12	15034990	15034990	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattgtatataagcctatgTatttctgtaatgctgctaca	7	7	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15034990	C	C	15034990	1	2	72	0	1	0	0	0	0	0	0	0	9651	1653	57	5		5	MGP	12	15034990	3'UTR	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1317786	15034990	118816905	359	79843											
PLEKHA5	54477	broad.mit.edu	37	chr12	19460990	19460990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagatgtaaaagttacacGggtttatgatgaagaggaac	11	4	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19460990	T	T	19460990	1	4	72	0	1	0	0	0	0	0	0	0	12154	1131	39	1		1	PLEKHA5	12	19460990	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4426000	19460990	114390905	360	79844											
PYROXD1	79912	broad.mit.edu	37	chr12	21619598	21619598	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccctttattcccttctccTgcctgattgccctggccaga	7	16	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21619598	A	A	21619598	1	1	72	0	1	0	0	0	0	0	0	0	12974	1595	55	5		5	PYROXD1	12	21619598	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2158608	21619598	112232297	361	79845											
ABCC9	10060	broad.mit.edu	37	chr12	22031700	22031700	+	Intron	DEL	T	-	-													aatgtcaccttctgatttggTgctacattgaagtaaaagaa					rs4148668		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22031700	-	-	22031700	6	5	72	0	1	1	0	1	0	0	0	0	59	1711	59	0		0	ABCC9	12	22031700	Intron	DEL	T	TCGA-17-Z043-01A-01W-0746-08	412102	22031700	111820195	362	79846											
BCAT1	586	broad.mit.edu	37	chr12	25031629	25031629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacagaattttctcacaatGtggcaataataaatgatcct	6	7	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25031629	A	A	25031629	1	1	72	0	1	0	0	0	0	0	0	0	1359	1392	48	4		4	BCAT1	12	25031629	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2999929	25031629	108820266	363	79847											
ITPR2	3709	broad.mit.edu	37	chr12	26818887	26818887	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcaatttttgacgctctcGgtttggcttagtgataacca	8	9	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26818887	A	A	26818887	4	1	72	1	0	0	0	0	0	1	0	0	7991	1124	39	4	6774	4	ITPR2	12	26818887	Nonsense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1787258	26818887	107033008	364	79848											
PPFIBP1	8496	broad.mit.edu	37	chr12	27808044	27808044	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtctttttctatctgtAgttttctttcactcctctgt	5	10	6	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27808044	C	C	27808044	1	2	72	0	1	0	0	0	0	0	0	0	12409	435	15	5		5	PPFIBP1	12	27808044	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	989157	27808044	106043851	365	79849											
DENND5B	160518	broad.mit.edu	37	chr12	31633142	31633142	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgagtgaaactgggggtcTttattgtccgtttgtgtcct	12	6	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31633142	G	G	31633142	3	3	72	1	0	0	0	0	1	0	0	0	4477	1606	56	5	3615	5	DENND5B	12	31633142	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	3825098	31633142	102218753	366	79850											
LRRK2	120892	broad.mit.edu	37	chr12	40761466	40761466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatacaatcttgcttgaccGtttgggacatcaatcttcca	7	10	3	2	rs150062967		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40761466	T	T	40761466	3	4	72	1	0	0	0	0	1	0	0	0	9120	1145	40	3	7685	3	LRRK2	12	40761466	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	9128324	40761466	93090429	367	79851											
VDR	7421	broad.mit.edu	37	chr12	48240466	48240466	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacgtcactgacgcggtacTtgtagtcttggttgccacag	11	11	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48240466	A	A	48240466	3	1	72	1	0	0	0	0	1	0	0	0	17276	1609	56	5	414	5	VDR	12	48240466	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	7479000	48240466	85611429	368	79852											
COL2A1	1280	broad.mit.edu	37	chr12	48380838	48380838	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagagatgtcagtggaactTgggggtcactttgggctctt	14	8	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48380838	A	A	48380838	1	1	72	0	1	0	0	0	0	0	0	0	3719	1827	63	5		5	COL2A1	12	48380838	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	140372	48380838	85471057	369	79853											
ANP32D	23519	broad.mit.edu	37	chr12	48866596	48866597	+	Frame_Shift_Ins	INS	-	A	A													ctggaattattaaatacaatINScaacataggcctcacctcaa							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48866597	A	A	48866596	7	5	72	1	0	1	1	0	0	0	0	0	708	1435	50	0	151	0	ANP32D	12	48866596	Frame_Shift_Ins	INS	-	TCGA-17-Z043-01A-01W-0746-08	485758	48866596	84985299	370	79854											
DCD	117159	broad.mit.edu	37	chr12	55042175	55042175	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcctctctgggccttttttTaagcatgacagggaccaatg	10	10	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55042175	A	A	55042175	1	1	72	0	1	0	0	0	0	0	0	0	4316	1769	61	5		5	DCD	12	55042175	5'Flank	SNP	T	TCGA-17-Z043-01A-01W-0746-08	6175579	55042175	78809720	371	79855											
NEUROD4	58158	broad.mit.edu	37	chr12	55420509	55420509	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtcaaggctaatgccagaGaacggacccggatgcatggc	14	10	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55420509	A	A	55420509	3	1	72	1	0	0	0	0	1	0	0	0	10445	943	33	4	288	4	NEUROD4	12	55420509	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	378334	55420509	78431386	372	79856											
DGKA	1606	broad.mit.edu	37	chr12	56336147	56336147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctggtatggaaaggattGgggaagaagaggggcacaga	17	4	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56336147	T	T	56336147	1	4	72	0	1	0	0	0	0	0	0	0	4505	1363	47	2		2	DGKA	12	56336147	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	915638	56336147	77515748	373	79857											
ZBTB39	9880	broad.mit.edu	37	chr12	57396734	57396734	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcggtacatgagggccccCgagtgtgtctttaggtggca	15	10	1	1	rs148071081	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57396734	A	A	57396734	2	1	72	1	0	0	0	0	0	0	0	1	17666	639	23	1		1	ZBTB39	12	57396734	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1060587	57396734	76455161	374	79858											
KIF5A	3798	broad.mit.edu	37	chr12	57962632	57962632	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccaagcatctctgttactCcatcttcttccctgttcctt	4	15	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57962632	A	A	57962632	1	1	72	0	1	0	0	0	0	0	0	0	8375	870	30	3		3	KIF5A	12	57962632	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	565898	57962632	75889263	375	79859											
TMEM5	10329	broad.mit.edu	37	chr12	64173625	64173626	+	5'Flank	DNP	CC	AA	AA													ccgggcgctgggcggaggagCcttggctggggactgcctgg							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	64173626	AA	AA	64173625	1	1	72	0	1	0	0	0	0	0	0	0	16297	754	26	3		3	TMEM5	12	64173625	5'Flank	DNP	CC	TCGA-17-Z043-01A-01W-0746-08	6210993	64173625	69678270	376	79860											
IRAK3	11213	broad.mit.edu	37	chr12	66603295	66603295	+	Frame_Shift_Del	DEL	T	-	-													gtggatttccaaatatattaTtcaaggtagagtatgtgtgc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66603295	-	-	66603295	7	5	72	1	0	1	0	1	0	0	0	0	7894	1493	52	0	386	0	IRAK3	12	66603295	Frame_Shift_Del	DEL	T	TCGA-17-Z043-01A-01W-0746-08	2429670	66603295	67248600	377	79861											
NAV3	89795	broad.mit.edu	37	chr12	78510532	78510532	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgtgtttgattcactgctCttgcatgtcttgcctttagc	8	11	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78510532	A	A	78510532	1	1	72	0	1	0	0	0	0	0	0	0	10279	928	32	3		3	NAV3	12	78510532	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	11907237	78510532	55341363	378	79862											
LTA4H	4048	broad.mit.edu	37	chr12	96431147	96431147	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttggaagctgagagaacaCcagaatttattgttttaaaa	10	4	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96431147	G	G	96431147	1	3	72	0	1	0	0	0	0	0	0	0	9156	522	18	4		4	LTA4H	12	96431147	5'Flank	SNP	C	TCGA-17-Z043-01A-01W-0746-08	17920615	96431147	37420748	379	79863											
IKBIP	121457	broad.mit.edu	37	chr12	99019977	99019977	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttttctgtttctatcagatCctgagagactctgagaacag	8	9	4	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99019977	G	G	99019977	1	3	72	0	1	0	0	0	0	0	0	0	7679	855	30	4		4	IKBIP	12	99019977	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2588830	99019977	34831918	380	79864											
SLC5A8	160728	broad.mit.edu	37	chr12	101577946	101577946	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaagcacaggccacaaaaaGtccaggaagtcctggataat	10	9	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101577946	C	C	101577946	3	2	72	1	0	0	0	0	1	0	0	0	14785	1029	36	4	846	4	SLC5A8	12	101577946	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2557969	101577946	32273949	381	79865											
ACAD10	80724	broad.mit.edu	37	chr12	112159472	112159472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttattttcatttgtccttgCaggattatgaaagcccttgc	7	8	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112159472	A	A	112159472	1	1	72	0	1	0	0	0	0	0	0	0	108	725	25	3		3	ACAD10	12	112159472	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	10581526	112159472	21692423	382	79866											
TMEM116	89894	broad.mit.edu	37	chr12	112369379	112369390	+	3'UTR	DEL	TTAGCGTAGAAT	-	-													ccaacattctttccaatccaTtagcgtagaataactccagt							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112369390	-	-	112369379	6	5	72	0	1	1	0	1	0	0	0	0	16153	1508	52	0		0	TMEM116	12	112369379	3'UTR	DEL	TTAGCGTAGAAT	TCGA-17-Z043-01A-01W-0746-08	209907	112369379	21482516	383	79867											
NOS1	4842	broad.mit.edu	37	chr12	117718551	117718552	+	Frame_Shift_Ins	INS	-	G	G													ctgtgaactgcacattggctINSgggtcccccagggtggagcc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117718552	G	G	117718551	7	5	72	1	0	1	1	0	0	0	0	0	10636	1567	55	0	2889	0	NOS1	12	117718551	Frame_Shift_Ins	INS	-	TCGA-17-Z043-01A-01W-0746-08	5349172	117718551	16133344	384	79868											
KSR2	283455	broad.mit.edu	37	chr12	117904337	117904337	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgttctaactttcctactgTacttcagagctctatgcaaa	5	11	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117904337	C	C	117904337	1	2	72	0	1	0	0	0	0	0	0	0	8654	1653	57	5		5	KSR2	12	117904337	3'UTR	SNP	T	TCGA-17-Z043-01A-01W-0746-08	185786	117904337	15947558	385	79869											
RIMBP2	23504	broad.mit.edu	37	chr12	130941203	130941203	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacagcaggttgaactgctCactttgagtccggcatttct	11	10	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130941203	A	A	130941203	4	1	72	1	0	0	0	0	0	1	0	0	13472	835	29	3	3077	3	RIMBP2	12	130941203	Nonsense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	13036866	130941203	2910692	386	79870											
EP400	57634	broad.mit.edu	37	chr12	132498035	132498035	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctcttgtcctgtttgcagCcaacaacgtctgcttctgat	8	12	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132498035	G	G	132498035	3	3	72	1	0	0	0	0	1	0	0	0	5191	753	26	4	3675	4	EP400	12	132498035	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1556832	132498035	1353860	387	79871											
TPTE2	93492	broad.mit.edu	37	chr13	20008691	20008691	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacttcagtaaattcacCtatcacttttagcttagggt	6	10	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20008691	T	T	20008691	1	4	72	0	1	0	0	0	0	0	0	0	16555	696	24	4		4	TPTE2	13	20008691	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		20008691	95161187	388	79872											
TPTE2	93492	broad.mit.edu	37	chr13	20039271	20039271	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaaatatgtcacactatcaCagtggcatatattctcaaga	5	9	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20039271	G	G	20039271	1	3	72	0	1	0	0	0	0	0	0	0	16555	493	17	4		4	TPTE2	13	20039271	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	30580	20039271	95130607	389	79873											
FLT1	2321	broad.mit.edu	37	chr13	29002073	29002073	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaacctgtggttaaaaacAtgatcagtaagtcatttcac	6	7	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29002073	G	G	29002073	1	3	72	0	1	0	0	0	0	0	0	0	5999	232	8	5		5	FLT1	13	29002073	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	8962802	29002073	86167805	390	79874											
MTUS2	23281	broad.mit.edu	37	chr13	30062326	30062326	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaaggatccaggtagttaGctgcttctttcctccaatgc	8	10	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30062326	A	A	30062326	1	1	72	0	1	0	0	0	0	0	0	0	10060	986	34	4		4	MTUS2	13	30062326	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1060253	30062326	85107552	391	79875											
NBEA	26960	broad.mit.edu	37	chr13	36220080	36220080	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttattaaggtatatgttctGtatttagtgtggaaagtgtt	10	1	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36220080	C	C	36220080	1	2	72	0	1	0	0	0	0	0	0	0	10281	1392	48	4		4	NBEA	13	36220080	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6157754	36220080	78949798	392	79876											
C13orf31	144811	broad.mit.edu	37	chr13	44455589	44455589	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacgtaatcacagctcaagaActaagaggaattcagaatga	8	7	3	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44455589	T	T	44455589	3	4	72	1	0	0	0	0	1	0	0	0	1739	40	2	5	470	5	C13orf31	13	44455589	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	8235509	44455589	70714289	393	79877											
MED4	29079	broad.mit.edu	37	chr13	48669321	48669321	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacccaggagaggaaaaagAggcctggcgagagcgccccc	14	13	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48669321	T	T	48669321	1	4	72	0	1	0	0	0	0	0	0	0	9543	319	11	5		5	MED4	13	48669321	5'Flank	SNP	A	TCGA-17-Z043-01A-01W-0746-08	4213732	48669321	66500557	394	79878											
VPS36	51028	broad.mit.edu	37	chr13	53000260	53000260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctcaatatttgaaattcTtccatcacaaattcaattcc	1	12	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53000260	A	A	53000260	1	1	72	0	1	0	0	0	0	0	0	0	17331	1624	56	5		5	VPS36	13	53000260	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4330939	53000260	62169618	395	79879											
GPC5	2262	broad.mit.edu	37	chr13	92738195	92738195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactcaccccgtgctttgCagtcttgttcctaacagcca	7	16	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92738195	A	A	92738195	1	1	72	0	1	0	0	0	0	0	0	0	6666	725	25	3		3	GPC5	13	92738195	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	39737935	92738195	22431683	396	79880											
DOCK9	23348	broad.mit.edu	37	chr13	99462449	99462449	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccctccgcttctcataaaTggggatgataagtttgtaga	9	8	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99462449	C	C	99462449	3	2	72	1	0	0	0	0	1	0	0	0	4734	1464	51	5	1015	5	DOCK9	13	99462449	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	6724254	99462449	15707429	397	79881											
FAM155A	728215	broad.mit.edu	37	chr13	108104551	108104551	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcctgcccatatcttaCtctaaaatgtaaaaccctgg	4	13	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108104551	T	T	108104551	1	4	72	0	1	0	0	0	0	0	0	0	5511	580	20	4		4	FAM155A	13	108104551	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8642102	108104551	7065327	398	79882											
MYO16	23026	broad.mit.edu	37	chr13	109507808	109507808	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtcaagctaatgcctccTgccccaaacgatgacctggc	9	15	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109507808	C	C	109507808	2	2	72	1	0	0	0	0	0	0	0	1	10158	1567	55	5		5	MYO16	13	109507808	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1403257	109507808	5662070	399	79883											
COL4A1	1282	broad.mit.edu	37	chr13	110814736	110814736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggggtgcctgggggccCcatggatcctggcaacccat	15	12	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110814736	A	A	110814736	3	1	72	1	0	0	0	0	1	0	0	0	3721	623	22	2	726	2	COL4A1	13	110814736	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1306928	110814736	4355142	400	79884											
OR4K17	390436	broad.mit.edu	37	chr14	20586108	20586108	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgtagtgacctcatggctCttgggtctccttcactcagg	10	12	5	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20586108	A	A	20586108	2	1	72	1	0	0	0	0	0	0	0	1	11165	900	32	3		3	OR4K17	14	20586108	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08		20586108	86763432	401	79885											
MYH6	4624	broad.mit.edu	37	chr14	23858085	23858085	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttggcctcttcgagctcCtcagtccgctgaatggcgtc	10	15	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23858085	T	T	23858085	2	4	72	1	0	0	0	0	0	0	0	1	10132	680	24	4		4	MYH6	14	23858085	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3271977	23858085	83491455	402	79886											
PSME2	5721	broad.mit.edu	37	chr14	24615569	24615569	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccacaaactagctttcccTggaagctcctgctcactgca	6	16	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24615569	C	C	24615569	1	2	72	0	1	0	0	0	0	0	0	0	12813	1595	55	5		5	PSME2	14	24615569	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	757484	24615569	82733971	403	79887											
GALNTL1	57452	broad.mit.edu	37	chr14	69792676	69792676	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccttcctctttgcatcctCagcggaagactgtctactcc	7	15	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69792676	T	T	69792676	1	4	72	0	1	0	0	0	0	0	0	0	6283	841	29	4		4	GALNTL1	14	69792676	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	45177107	69792676	37556864	404	79888											
PCNX	22990	broad.mit.edu	37	chr14	71429094	71429095	+	Intron	DNP	TG	AT	AT													gcctttttccctcctcctgaTggtggtctccgttattctcg							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	71429095	AT	AT	71429094	1	1	72	0	1	0	0	0	0	0	0	0	11685	1479	51	5		5	PCNX	14	71429094	Intron	DNP	TG	TCGA-17-Z043-01A-01W-0746-08	1636418	71429094	35920446	405	79889											
ENTPD5	957	broad.mit.edu	37	chr14	74439444	74439444	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctccaaaagactctaagtCatttccacccttttgttcga	4	13	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74439444	G	G	74439444	1	3	72	0	1	0	0	0	0	0	0	0	5184	841	29	4		4	ENTPD5	14	74439444	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3010350	74439444	32910096	406	79890											
LTBP2	4053	broad.mit.edu	37	chr14	75022176	75022176	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagttctagaggccctgctCttctaggacccaagacaggg	12	11	3	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75022176	T	T	75022176	1	4	72	0	1	0	0	0	0	0	0	0	9161	928	32	4		4	LTBP2	14	75022176	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	582732	75022176	32327364	407	79891											
GALC	2581	broad.mit.edu	37	chr14	88421093	88421093	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctcacagttctctgaagAgtatttcttttcttctcttc	5	10	5	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88421093	G	G	88421093	1	3	72	0	1	0	0	0	0	0	0	0	6263	319	11	5		5	GALC	14	88421093	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	13398917	88421093	18928447	408	79892											
SERPINA6	866	broad.mit.edu	37	chr14	94770593	94770593	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaccggtcatcagagtcGcaatgacatttattaaaaga	7	10	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94770593	T	T	94770593	1	4	72	0	1	0	0	0	0	0	0	0	14206	1102	38	3		3	SERPINA6	14	94770593	3'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6349500	94770593	12578947	409	79893											
SERPINA11	256394	broad.mit.edu	37	chr14	94914752	94914753	+	Missense_Mutation	DNP	CC	AA	AA													gcaagggtgtggaggaggctCcggaagccctggtggatgtc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	94914753	AA	AA	94914752	3	1	72	1	0	0	0	0	1	0	0	0	14201	842	30	3	924	3	SERPINA11	14	94914752	Missense_Mutation	DNP	CC	TCGA-17-Z043-01A-01W-0746-08	144159	94914752	12434788	410	79894											
DYNC1H1	1778	broad.mit.edu	37	chr14	102508666	102508666	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaaagccttagtccccAggcattcaggcaggcagcct	11	12	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102508666	C	C	102508666	1	2	72	0	1	0	0	0	0	0	0	0	4881	203	7	5		5	DYNC1H1	14	102508666	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	7593914	102508666	4840874	411	79895											
ZNF839	55778	broad.mit.edu	37	chr14	102792955	102792955	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacttatcgagctgctccCtgaggcccaaaagctttaag	9	11	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102792955	T	T	102792955	2	4	72	1	0	0	0	0	0	0	0	1	18317	680	24	4		4	ZNF839	14	102792955	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	284289	102792955	4556585	412	79896											
TRAF3	7187	broad.mit.edu	37	chr14	103342916	103342916	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caattcctatatgatacattCcacaggccttccgctcaatt	4	13	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103342916	G	G	103342916	1	3	72	0	1	0	0	0	0	0	0	0	16563	870	30	4		4	TRAF3	14	103342916	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	549961	103342916	4006624	413	79897											
GABRB3	2562	broad.mit.edu	37	chr15	26960380	26960380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaacacacgtgggagaCttgggctggtgattgaagag	17	6	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26960380	A	A	26960380	1	1	72	0	1	0	0	0	0	0	0	0	6228	580	20	3		3	GABRB3	15	26960380	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		26960380	75571012	414	79898											
OTUD7A	161725	broad.mit.edu	37	chr15	32060266	32060266	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagccaatcccctgcttctcCtgctgtgaaacaattgccat	6	14	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32060266	G	G	32060266	1	3	72	0	1	0	0	0	0	0	0	0	11412	696	24	4		4	OTUD7A	15	32060266	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5099886	32060266	70471126	415	79899											
FMN1	342184	broad.mit.edu	37	chr15	33359176	33359176	+	Frame_Shift_Del	DEL	C	-	-													caatttgagcaaagctaagtCcccatcctttggtttaattt							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33359176	-	-	33359176	7	5	72	1	0	1	0	1	0	0	0	0	6007	855	30	0	2748	0	FMN1	15	33359176	Frame_Shift_Del	DEL	C	TCGA-17-Z043-01A-01W-0746-08	1298910	33359176	69172216	416	79900											
RYR3	6263	broad.mit.edu	37	chr15	33905645	33905645	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgccaccactgtgagctgcGaagccagcagtctccttcag	10	16	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33905645	T	T	33905645	1	4	72	0	1	0	0	0	0	0	0	0	13881	1073	37	3		3	RYR3	15	33905645	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	546469	33905645	68625747	417	79901											
BAHD1	22893	broad.mit.edu	37	chr15	40757401	40757401	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaggtgaggcatacttaGgctgaatttccagggaagct	13	7	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40757401	A	A	40757401	1	1	72	0	1	0	0	0	0	0	0	0	1302	1015	35	4		4	BAHD1	15	40757401	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6851756	40757401	61773991	418	79902											
SEMA6D	80031	broad.mit.edu	37	chr15	47873635	47873635	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaaatcagggaacatagctGaaagtacctggatggagtgg	14	5	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47873635	T	T	47873635	1	4	72	0	1	0	0	0	0	0	0	0	14155	1305	45	3		3	SEMA6D	15	47873635	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	7116234	47873635	54657757	419	79903											
SEMA6D	80031	broad.mit.edu	37	chr15	48051933	48051933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctttccaaactgcttctGttttccaggtagctcagtgg	9	10	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48051933	T	T	48051933	1	4	72	0	1	0	0	0	0	0	0	0	14155	1392	48	3		3	SEMA6D	15	48051933	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	178298	48051933	54479459	420	79904											
TLN2	83660	broad.mit.edu	37	chr15	63040641	63040641	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataatgccctgcgggagctcGaggtaggtccctgggaaggc	16	10	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63040641	A	A	63040641	3	1	72	1	0	0	0	0	1	0	0	0	16071	1059	37	4	4235	4	TLN2	15	63040641	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	14988708	63040641	39490751	421	79905											
PDCD7	10081	broad.mit.edu	37	chr15	65421542	65421542	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcccatgagacctcgtaTtaggaacaaacttacagcag	8	10	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65421542	C	C	65421542	1	2	72	0	1	0	0	0	0	0	0	0	11719	1508	52	5		5	PDCD7	15	65421542	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2380901	65421542	37109850	422	79906											
IGDCC3	9543	broad.mit.edu	37	chr15	65667437	65667437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggatatccacttacttGcagcttggatgcgagccttc	10	11	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65667437	T	T	65667437	3	4	72	1	0	0	0	0	1	0	0	0	7638	1319	46	3	2089	3	IGDCC3	15	65667437	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	245895	65667437	36863955	423	79907											
PTPLAD1	51495	broad.mit.edu	37	chr15	65847093	65847093	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcactccagcctgggcaAcagagcaagactctgtctca	9	14	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65847093	G	G	65847093	1	3	72	0	1	0	0	0	0	0	0	0	12881	58	2	5		5	PTPLAD1	15	65847093	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	179656	65847093	36684299	424	79908											
HEXA	3073	broad.mit.edu	37	chr15	72641662	72641662	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacccccacgcacagtcctAcacgtaaggacacgagtcac	7	16	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72641662	T	T	72641662	1	4	72	0	1	0	0	0	0	0	0	0	7140	406	14	5		5	HEXA	15	72641662	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	6794569	72641662	29889730	425	79909											
CCDC33	80125	broad.mit.edu	37	chr15	74574148	74574148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaactatcaatgatgaGgcccccacagtggctctctc	8	13	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74574148	T	T	74574148	3	4	72	1	0	0	0	0	1	0	0	0	2833	991	35	2	1091	2	CCDC33	15	74574148	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1932486	74574148	27957244	426	79910											
ARID3B	10620	broad.mit.edu	37	chr15	74882111	74882111	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catacacggaatctttcttcTcagcctgatgatgatcccgc	7	13	3	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74882111	C	C	74882111	1	2	72	0	1	0	0	0	0	0	0	0	919	1566	54	5		5	ARID3B	15	74882111	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	307963	74882111	27649281	427	79911											
LMAN1L	79748	broad.mit.edu	37	chr15	75117695	75117695	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccaaaggagccacagaaAgtccaagaacagcggaggtt	14	9	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75117695	T	T	75117695	1	4	72	0	1	0	0	0	0	0	0	0	8911	87	3	5		5	LMAN1L	15	75117695	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	235584	75117695	27413697	428	79912											
C15orf27	123591	broad.mit.edu	37	chr15	76518156	76518156	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtttctcggatgacaatcTagataatagcaatttctctc	7	8	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76518156	C	C	76518156	1	2	72	0	1	0	0	0	0	0	0	0	1801	1537	53	5		5	C15orf27	15	76518156	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1400461	76518156	26013236	429	79913											
EFTUD1	79631	broad.mit.edu	37	chr15	82512599	82512599	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcacaaatatgctgtcatCtctcagttcatccaagtagg	6	10	5	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82512599	A	A	82512599	1	1	72	0	1	0	0	0	0	0	0	0	5000	928	32	3		3	EFTUD1	15	82512599	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5994443	82512599	20018793	430	79914											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84588411	84588411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgactaagatggccttgcGggttgaggcagatctgtgtg	16	6	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84588411	T	T	84588411	1	4	72	0	1	0	0	0	0	0	0	0	276	1131	39	1		1	ADAMTSL3	15	84588411	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2075812	84588411	17942981	431	79915											
WDR73	84942	broad.mit.edu	37	chr15	85197493	85197493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggattccaccagccagtcgtCcccaggatccatggcaacga	10	15	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85197493	A	A	85197493	3	1	72	1	0	0	0	0	1	0	0	0	17450	855	30	3	1155	3	WDR73	15	85197493	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	609082	85197493	17333899	432	79916											
SNX29	92017	broad.mit.edu	37	chr16	12347544	12347544	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccacagaggcttcagacagtCacatcccctggggcctggtg	12	14	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12347544	G	G	12347544	1	3	72	0	1	0	0	0	0	0	0	0	15012	841	29	4		4	SNX29	16	12347544	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		12347544	78007209	433	79917											
XYLT1	64131	broad.mit.edu	37	chr16	17352994	17352994	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgagatgtcacacttaGggggctggtcatacttggtc	13	9	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17352994	A	A	17352994	3	1	72	1	0	0	0	0	1	0	0	0	17590	1000	35	4	2155	4	XYLT1	16	17352994	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5005450	17352994	73001759	434	79918											
ACSM2B	348158	broad.mit.edu	37	chr16	20548544	20548544	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagggaaaagaaagagaaaGaagaggggaatccaaatgaa	13	2	0	5			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20548544	T	T	20548544	1	4	72	0	1	0	0	0	0	0	0	0	184	957	33	3		3	ACSM2B	16	20548544	3'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	3195550	20548544	69806209	435	79919											
DNAH3	55567	broad.mit.edu	37	chr16	21051240	21051240	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagggcgtaatctgggaccAtcatggccactgtccggaac	13	11	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21051240	G	G	21051240	3	3	72	1	0	0	0	0	1	0	0	0	4643	217	8	5	7805	5	DNAH3	16	21051240	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	502696	21051240	69303513	436	79920											
ITGAD	3681	broad.mit.edu	37	chr16	31435380	31435380	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acccccgaagctctgagcctCccccagagccagttccacag	8	19	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31435380	T	T	31435380	1	4	72	0	1	0	0	0	0	0	0	0	7954	870	30	4		4	ITGAD	16	31435380	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	10384140	31435380	58919373	437	79921											
NETO2	81831	broad.mit.edu	37	chr16	47156936	47156936	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaagagaagctttcatTggtgaaaactacatatcatt	8	5	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47156936	A	A	47156936	1	1	72	0	1	0	0	0	0	0	0	0	10435	1827	63	5		5	NETO2	16	47156936	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	15721556	47156936	43197817	438	79922											
CYLD	1540	broad.mit.edu	37	chr16	50815347	50815347	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggatgctttttgtttactTaacaacctggaatgactcta	7	7	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50815347	A	A	50815347	1	1	72	0	1	0	0	0	0	0	0	0	4176	1769	61	5		5	CYLD	16	50815347	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	3658411	50815347	39539406	439	79923											
SLC6A2	6530	broad.mit.edu	37	chr16	55736430	55736430	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactgtagtttttgttcaccTtctgtgcatctggcctgggg	12	9	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55736430	A	A	55736430	1	1	72	0	1	0	0	0	0	0	0	0	14797	1624	56	5		5	SLC6A2	16	55736430	3'UTR	SNP	T	TCGA-17-Z043-01A-01W-0746-08	4921083	55736430	34618323	440	79924											
KCTD19	146212	broad.mit.edu	37	chr16	67354623	67354623	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaatgtggaaccatctctgtCgataaatagcctctggcttt	8	9	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67354623	G	G	67354623	3	3	72	1	0	0	0	0	1	0	0	0	8176	884	31	4	2671	4	KCTD19	16	67354623	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	11618193	67354623	23000130	441	79925											
DPEP2	64174	broad.mit.edu	37	chr16	68025095	68025095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctctctgccctgcaggGtggccaggaagcagtctgac	15	12	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68025095	T	T	68025095	1	4	72	0	1	0	0	0	0	0	0	0	4754	1276	44	3		3	DPEP2	16	68025095	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	670472	68025095	22329658	442	79926											
HYDIN	54768	broad.mit.edu	37	chr16	70927000	70927000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcccggagttgctgtgggGctctgaatgtcaccgccatg	14	11	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70927000	T	T	70927000	1	4	72	0	1	0	0	0	0	0	0	0	7537	1218	42	3		3	HYDIN	16	70927000	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2901905	70927000	19427753	443	79927											
VAT1L	57687	broad.mit.edu	37	chr16	77907658	77907658	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtcctctggaaagatcgtAtgtgggtgaggtctgaagga	16	5	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77907658	T	T	77907658	1	4	72	0	1	0	0	0	0	0	0	0	17257	464	16	5		5	VAT1L	16	77907658	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	6980658	77907658	12447095	444	79928											
FOXL1	2300	broad.mit.edu	37	chr16	86612429	86612429	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctccctctggccttcgccCccgcggctgctctagctgcc	10	21	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86612429	T	T	86612429	3	4	72	1	0	0	0	0	1	0	0	0	6076	623	22	4	102	4	FOXL1	16	86612429	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8704771	86612429	3742324	445	79929											
SHBG	6462	broad.mit.edu	37	chr17	7534281	7534281	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcatccctctaccactgtCatctcgtttaatccacacga	6	15	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7534281	T	T	7534281	1	4	72	0	1	0	0	0	0	0	0	0	14382	841	29	4		4	SHBG	17	7534281	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		7534281	73660929	446	79930											
TP53	7157	broad.mit.edu	37	chr17	7579582	7579583	+	Frame_Shift_Ins	INS	-	A	A													catccattgcttgggacggcINSaagggggactgtagatgggt					rs121912661		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579583	A	A	7579582	7	5	72	1	0	1	1	0	0	0	0	0	16505	709	25	0	1197	0	TP53	17	7579582	Frame_Shift_Ins	INS	-	TCGA-17-Z043-01A-01W-0746-08	45301	7579582	73615628	447	79931											
DNAH2	146754	broad.mit.edu	37	chr17	7701482	7701482	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accccacccccagtcacacgGatcgtgcgggtcattggaca	10	16	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7701482	T	T	7701482	2	4	72	1	0	0	0	0	0	0	0	1	4642	1161	41	3		3	DNAH2	17	7701482	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	121900	7701482	73493728	448	79932											
CHD3	1107	broad.mit.edu	37	chr17	7801419	7801419	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagctactggagacacCggtgagggaatgagcttgtg	15	7	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7801419	T	T	7801419	4	4	72	1	0	0	0	0	0	1	0	0	3357	666	23	4	2377	4	CHD3	17	7801419	Nonsense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	99937	7801419	73393791	449	79933											
TRAPPC1	58485	broad.mit.edu	37	chr17	7834428	7834428	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtctcgtagtaatggagTttgtaacggctagtttggaa	14	5	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7834428	C	C	7834428	2	2	72	1	0	0	0	0	0	0	0	1	16580	1722	60	5		5	TRAPPC1	17	7834428	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	33009	7834428	73360782	450	79934											
WDR16	146845	broad.mit.edu	37	chr17	9538770	9538770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaagctggaggaggccCtgaaggaacacaagtcatca	12	11	2	2	rs140517505	byFrequency;by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9538770	A	A	9538770	3	1	72	1	0	0	0	0	1	0	0	0	17403	680	24	2	1411	2	WDR16	17	9538770	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1704342	9538770	71656440	451	79935											
MYH13	8735	broad.mit.edu	37	chr17	10209812	10209812	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatctgcttcttcccgccCttcagcgccagttgttcagc	9	15	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10209812	T	T	10209812	2	4	72	1	0	0	0	0	0	0	0	1	10126	680	24	4		4	MYH13	17	10209812	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	671042	10209812	70985398	452	79936											
MYH8	4626	broad.mit.edu	37	chr17	10303514	10303514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgacagagtgagactcCatccccccgctccaaaaaaa	9	14	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10303514	T	T	10303514	1	4	72	0	1	0	0	0	0	0	0	0	10135	609	21	4		4	MYH8	17	10303514	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	93702	10303514	70891696	453	79937											
MYH8	4626	broad.mit.edu	37	chr17	10309502	10309502	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaagaaaacctggagaAagagagagtcacaaatcatc	9	7	2	5			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10309502	G	G	10309502	1	3	72	0	1	0	0	0	0	0	0	0	10135	29	1	5		5	MYH8	17	10309502	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	5988	10309502	70885708	454	79938											
NT5M	56953	broad.mit.edu	37	chr17	17227981	17227981	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccctagttaccctgacatcCctcatgattttagagagtgg	8	11	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17227981	G	G	17227981	1	3	72	0	1	0	0	0	0	0	0	0	10789	638	22	4		4	NT5M	17	17227981	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	6918479	17227981	63967229	455	79939											
MYO18A	399687	broad.mit.edu	37	chr17	27411201	27411201	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgtgagcacacaccagtgTgtgtgagtgtgtgtgcatgc	14	7	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27411201	A	A	27411201	1	1	72	0	1	0	0	0	0	0	0	0	10159	1711	59	5		5	MYO18A	17	27411201	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	10183220	27411201	53784009	456	79940											
MYO18A	399687	broad.mit.edu	37	chr17	27438708	27438708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgtatgtaagaggaagCagaggagctaccctctaggg	13	9	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27438708	A	A	27438708	1	1	72	0	1	0	0	0	0	0	0	0	10159	725	25	3		3	MYO18A	17	27438708	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	27507	27438708	53756502	457	79941											
MYO1D	4642	broad.mit.edu	37	chr17	30932130	30932130	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgattcaccagcactcCaacaagttctccaattcgac	5	13	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30932130	A	A	30932130	4	1	72	1	0	0	0	0	0	1	0	0	10165	603	21	2	189	2	MYO1D	17	30932130	Nonsense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	3493422	30932130	50263080	458	79942											
PIP4K2B	8396	broad.mit.edu	37	chr17	36934387	36934387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaagaacgtagtgaggGcagaggtaaaagaccagaga	14	5	0	6			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36934387	T	T	36934387	1	4	72	0	1	0	0	0	0	0	0	0	12032	1218	42	3		3	PIP4K2B	17	36934387	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6002257	36934387	44260823	459	79943											
KRT13	3860	broad.mit.edu	37	chr17	39660094	39660094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaaatacgctaacactaaCgatagctgatgggctaaaaa	7	8	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39660094	T	T	39660094	1	4	72	0	1	0	0	0	0	0	0	0	8521	551	19	4		4	KRT13	17	39660094	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2725707	39660094	41535116	460	79944											
ITGB3	3690	broad.mit.edu	37	chr17	45370108	45370108	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttcacgttaaaaaaaaaAgttactgatagatggcaatt	6	5	1	2	rs78169196		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45370108	T	T	45370108	1	4	72	0	1	0	0	0	0	0	0	0	7965	87	3	5		5	ITGB3	17	45370108	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	5710014	45370108	35825102	461	79945											
KPNB1	3837	broad.mit.edu	37	chr17	45757786	45757786	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatctttgaaatttgctaaGaaacccatagcactggtttg	7	7	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45757786	C	C	45757786	1	2	72	0	1	0	0	0	0	0	0	0	8506	957	33	4		4	KPNB1	17	45757786	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	387678	45757786	35437424	462	79946											
ANKFN1	162282	broad.mit.edu	37	chr17	54520139	54520139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagttattaaattctataCccatagagtctagggtaaaa	6	6	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54520139	A	A	54520139	1	1	72	0	1	0	0	0	0	0	0	0	625	522	18	3		3	ANKFN1	17	54520139	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8762353	54520139	26675071	463	79947											
TANC2	26115	broad.mit.edu	37	chr17	61417772	61417772	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcatactataaaaatgattGattttatcacattgccaaaa	4	6	2	2	rs149834031	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61417772	C	C	61417772	1	2	72	0	1	0	0	0	0	0	0	0	15664	1305	45	4		4	TANC2	17	61417772	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6897633	61417772	19777438	464	79948											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851708	14851708	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaactgaaacagaaaacAgtaacaaaaagggcatctca	6	8	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14851708	T	T	14851708	2	4	72	1	0	0	0	0	0	0	0	1	659	175	7	5		5	ANKRD30B	18	14851708	Silent	SNP	A	TCGA-17-Z043-01A-01W-0746-08		14851708	63225540	465	79949											
LAMA3	3909	broad.mit.edu	37	chr18	21523683	21523683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttgctccccaccctctGtctcagtgctgagattcgaa	9	13	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21523683	T	T	21523683	1	4	72	0	1	0	0	0	0	0	0	0	8679	1392	48	3		3	LAMA3	18	21523683	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6671975	21523683	56553565	466	79950											
ZNF521	25925	broad.mit.edu	37	chr18	22901869	22901869	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttagctaggtattcaaatgTaggaataaaataatttgaag	8	3	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22901869	A	A	22901869	1	1	72	0	1	0	0	0	0	0	0	0	18092	1653	57	5		5	ZNF521	18	22901869	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1378186	22901869	55175379	467	79951											
DSG1	1828	broad.mit.edu	37	chr18	28908227	28908227	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattgatcagccaccatatGggatctttgtcattaatcag	8	8	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28908227	A	A	28908227	3	1	72	1	0	0	0	0	1	0	0	0	4816	1348	47	4	306	4	DSG1	18	28908227	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	6006358	28908227	49169021	468	79952											
DSG2	1829	broad.mit.edu	37	chr18	29122617	29122617	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggcaacatgagatgtcCgagatggatggaaggtggga	17	4	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29122617	T	T	29122617	2	4	72	1	0	0	0	0	0	0	0	1	4817	639	23	4		4	DSG2	18	29122617	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	214390	29122617	48954631	469	79953											
C18orf34	374864	broad.mit.edu	37	chr18	30672865	30672865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttcttcaagtgaatcagCtattattttctagaaggtaa	6	5	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30672865	A	A	30672865	3	1	72	1	0	0	0	0	1	0	0	0	1920	797	28	3	367	3	C18orf34	18	30672865	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1550248	30672865	47404383	470	79954											
KIAA1632	57724	broad.mit.edu	37	chr18	43496612	43496612	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaacagaattttccctaatTacttatgaggaaacagaaaa	5	7	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43496612	A	A	43496612	1	1	72	0	1	0	0	0	0	0	0	0	8319	1769	61	5		5	KIAA1632	18	43496612	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	12823747	43496612	34580636	471	79955											
C18orf32	497661	broad.mit.edu	37	chr18	47017314	47017314	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttctaagtatgaagaataAagtgttggttaactagatca	9	3	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47017314	C	C	47017314	1	2	72	0	1	0	0	0	0	0	0	0	1919	29	1	5		5	C18orf32	18	47017314	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	3520702	47017314	31059934	472	79956											
MYO5B	4645	broad.mit.edu	37	chr18	47489408	47489408	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtctcaaacctacagaAtggaaagagaagataagaga	9	5	1	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47489408	G	G	47489408	1	3	72	0	1	0	0	0	0	0	0	0	10173	116	4	5		5	MYO5B	18	47489408	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	472094	47489408	30587840	473	79957											
MRO	83876	broad.mit.edu	37	chr18	48325711	48325711	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgctgctctgcgcttacAgaattttatttgcgtagaag	9	10	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48325711	C	C	48325711	3	2	72	1	0	0	0	0	1	0	0	0	9866	188	7	5	7	5	MRO	18	48325711	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	836303	48325711	29751537	474	79958											
ALPK2	115701	broad.mit.edu	37	chr18	56204135	56204135	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggggaattactgcagAaaccctctccctctgggagc	12	11	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56204135	T	T	56204135	3	4	72	1	0	0	0	0	1	0	0	0	545	246	9	5	3264	5	ALPK2	18	56204135	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	7878424	56204135	21873113	475	79959											
ZNRF4	148066	broad.mit.edu	37	chr19	5455751	5455751	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccgagccctcgtggcagtCaaagccttgctggtcttgtc	13	13	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5455751	G	G	5455751	2	3	72	1	0	0	0	0	0	0	0	1	18343	813	29	4		4	ZNRF4	19	5455751	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08		5455751	53673232	476	79960											
VAV1	7409	broad.mit.edu	37	chr19	6771856	6771856	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaaggaagggagggaaaGagggagagaaaggaaggaag	20	0	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6771856	C	C	6771856	1	2	72	0	1	0	0	0	0	0	0	0	17258	957	33	4		4	VAV1	19	6771856	5'Flank	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1316105	6771856	52357127	477	79961											
MUC16	94025	broad.mit.edu	37	chr19	9076923	9076923	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccagcagtaggggcaatgTcacttttcactgcacttaca	9	12	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9076923	A	A	9076923	3	1	72	1	0	0	0	0	1	0	0	0	10067	1667	58	5	33328	5	MUC16	19	9076923	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2305067	9076923	50052060	478	79962											
KEAP1	9817	broad.mit.edu	37	chr19	10602799	10602799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgcctggacgtagaaccgtCgctgttcgcagtcgtacttg	13	12	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602799	A	A	10602799	3	1	72	1	0	0	0	0	1	0	0	0	8211	884	31	3	1111	3	KEAP1	19	10602799	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1525876	10602799	48526184	479	79963											
ZNF709	163051	broad.mit.edu	37	chr19	12575977	12575977	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttttccacattgtttacaTtcatagggtttctctccaga	6	10	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12575977	G	G	12575977	3	3	72	1	0	0	0	0	1	0	0	0	18241	1490	52	5	1170	5	ZNF709	19	12575977	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1973178	12575977	46553006	480	79964											
UNC13A	23025	broad.mit.edu	37	chr19	17785516	17785516	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgccccgcaccgcgatggtCgtgctcttgacattctgcac	10	16	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17785516	G	G	17785516	2	3	72	1	0	0	0	0	0	0	0	1	17110	871	31	4		4	UNC13A	19	17785516	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5209539	17785516	41343467	481	79965											
SLC5A5	6528	broad.mit.edu	37	chr19	17985241	17985241	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaccacccttctgcctcctCtccccatccccaactcgccc	4	24	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17985241	T	T	17985241	1	4	72	0	1	0	0	0	0	0	0	0	14782	928	32	4		4	SLC5A5	19	17985241	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	199725	17985241	41143742	482	79966											
CRLF1	9244	broad.mit.edu	37	chr19	18709495	18709496	+	Intron	DEL	AC	-	-													gcagcctcagggtgcagacaAcacatgggggctcagagagg							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18709496	-	-	18709495	6	5	72	0	1	1	0	1	0	0	0	0	3918	58	2	0		0	CRLF1	19	18709495	Intron	DEL	AC	TCGA-17-Z043-01A-01W-0746-08	724254	18709495	40419488	483	79967											
ZNF536	9745	broad.mit.edu	37	chr19	30935619	30935619	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgcggccggcgcttcaagGagccctggttcctcaagaac	12	14	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935619	T	T	30935619	4	4	72	1	0	0	0	0	0	1	0	0	18101	1175	41	3	1152	3	ZNF536	19	30935619	Nonsense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	12226124	30935619	28193364	484	79968											
RHPN2	85415	broad.mit.edu	37	chr19	33517420	33517420	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccacttactctgtgttctGatagacgcccaccgagatgt	8	13	2	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33517420	C	C	33517420	3	2	72	1	0	0	0	0	1	0	0	0	13460	1299	45	4	1808	4	RHPN2	19	33517420	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2581801	33517420	25611563	485	79969											
DMKN	93099	broad.mit.edu	37	chr19	36004272	36004272	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatgtccaagggcctcccCaatatttgtcccagtgcttt	8	14	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36004272	T	T	36004272	3	4	72	1	0	0	0	0	1	0	0	0	4622	594	21	4	1705	4	DMKN	19	36004272	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2486852	36004272	23124711	486	79970											
RYR1	6261	broad.mit.edu	37	chr19	38959828	38959828	+	Intron	SNP	T	A	A													ctttcttgttttcctctgtcTctcccaaccctgcactgccc							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38959828	A	A	38959828	1	1	72	0	1	0	0	0	0	0	0	0	13879	1566	54	5		5	RYR1	19	38959828	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2955556	38959828	20169155	487	79971	364	2									
RYR1	6261	broad.mit.edu	37	chr19	38959830	38959830	+	Intron	SNP	T	C	C													ttcttgttttcctctgtctcTcccaaccctgcactgccctt							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38959830	C	C	38959830	1	2	72	0	1	0	0	0	0	0	0	0	13879	1566	54	5		5	RYR1	19	38959830	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	2	38959830	20169153	488	79972	364	2									
CYP2A7	1549	broad.mit.edu	37	chr19	41531898	41531898	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctcccgcctccacactcGgggtgttctgctcaccgcgc	9	19	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41531898	C	C	41531898	1	2	72	0	1	0	0	0	0	0	0	0	4196	1131	39	4		4	CYP2A7	19	41531898	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2572068	41531898	17597085	489	79973											
CYP2A7	1549	broad.mit.edu	37	chr19	41533253	41533253	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatatcatgtactgggatgTtttgcccccaggttctcaca	9	10	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41533253	C	C	41533253	1	2	72	0	1	0	0	0	0	0	0	0	4196	1740	60	5		5	CYP2A7	19	41533253	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	1355	41533253	17595730	490	79974											
PSG8	440533	broad.mit.edu	37	chr19	43261591	43261591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatatgttttagtgatttgGgggataaagaacacttgtgc	11	4	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43261591	T	T	43261591	1	4	72	0	1	0	0	0	0	0	0	0	12767	1247	43	2		2	PSG8	19	43261591	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1728338	43261591	15867392	491	79975											
PSG6	5675	broad.mit.edu	37	chr19	43519579	43519579	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagggaaggggaagctccTtgtctcttaaagggacacag	14	8	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43519579	G	G	43519579	1	3	72	0	1	0	0	0	0	0	0	0	12765	1624	56	5		5	PSG6	19	43519579	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	257988	43519579	15609404	492	79976											
PSG5	5673	broad.mit.edu	37	chr19	43680281	43680281	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgagttgttgatggtgatGtagggcttgggcagcttcac	15	5	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43680281	A	A	43680281	2	1	72	1	0	0	0	0	0	0	0	1	12764	1372	48	4		4	PSG5	19	43680281	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	160702	43680281	15448702	493	79977											
KCNN4	3783	broad.mit.edu	37	chr19	44273291	44273291	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatgaagaaacaaaacaaaGaaacaaagttgtcgaagagc	8	6	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44273291	C	C	44273291	1	2	72	0	1	0	0	0	0	0	0	0	8151	957	33	4		4	KCNN4	19	44273291	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	593010	44273291	14855692	494	79978											
ZNF229	7772	broad.mit.edu	37	chr19	44932522	44932522	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcactctttggtggttccGcagacctgaggtataactga	11	9	1	3	rs61742344		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44932522	A	A	44932522	3	1	72	1	0	0	0	0	1	0	0	0	17908	1086	38	4	47	4	ZNF229	19	44932522	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	659231	44932522	14196461	495	79979											
VASP	7408	broad.mit.edu	37	chr19	46020838	46020838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactctcttccttccacacActgtctttgtcccttggaat	4	15	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46020838	G	G	46020838	1	3	72	0	1	0	0	0	0	0	0	0	17255	174	6	5		5	VASP	19	46020838	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	1088316	46020838	13108145	496	79980											
CALM3	808	broad.mit.edu	37	chr19	47112289	47112289	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagaagagaatcgcagcttCaggaacaagcccccagatcc	9	13	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47112289	G	G	47112289	1	3	72	0	1	0	0	0	0	0	0	0	2612	841	29	4		4	CALM3	19	47112289	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1091451	47112289	12016694	497	79981											
SIGLEC10	89790	broad.mit.edu	37	chr19	51914558	51914558	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggttcttctttgattctgggGagggagcacctggtggaaga	16	6	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51914558	A	A	51914558	3	1	72	1	0	0	0	0	1	0	0	0	14419	1174	41	4	208	4	SIGLEC10	19	51914558	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4802269	51914558	7214425	498	79982											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002345	52002345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccacaaaagggtctcaGgtcaccagggtgagtcctgg	12	12	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52002345	T	T	52002345	1	4	72	0	1	0	0	0	0	0	0	0	14421	1015	35	2		2	SIGLEC12	19	52002345	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	87787	52002345	7126638	499	79983											
LAIR1	3903	broad.mit.edu	37	chr19	54876603	54876603	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccactagtgagacgagaGggagggccttggtttctgaa	14	8	1	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54876603	T	T	54876603	1	4	72	0	1	0	0	0	0	0	0	0	8674	1015	35	2		2	LAIR1	19	54876603	5'UTR	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2874258	54876603	4252380	500	79984											
C19orf51	352909	broad.mit.edu	37	chr19	55670944	55670944	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctccgggtgccacacaggCcccaagctcagggatgagaa	12	15	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55670944	T	T	55670944	3	4	72	1	0	0	0	0	1	0	0	0	1952	739	26	4	438	4	C19orf51	19	55670944	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	794341	55670944	3458039	501	79985											
PTPRH	5794	broad.mit.edu	37	chr19	55708852	55708852	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaccccagcctgtctgcctCtcccccacagcaaagctgag	7	19	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55708852	A	A	55708852	1	1	72	0	1	0	0	0	0	0	0	0	12911	928	32	3		3	PTPRH	19	55708852	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	37908	55708852	3420131	502	79986											
TMEM190	147744	broad.mit.edu	37	chr19	55889560	55889560	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggagacagagggcgaggaaGaggaggattaggggagtccc	20	5	0	3			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55889560	C	C	55889560	3	2	72	1	0	0	0	0	1	0	0	0	16237	943	33	4	541	4	TMEM190	19	55889560	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	180708	55889560	3239423	503	79987											
FIZ1	84922	broad.mit.edu	37	chr19	56109113	56109113	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgccgggcaaagtggCgccgcaggtctgagcggtag	18	10	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56109113	G	G	56109113	3	3	72	1	0	0	0	0	1	0	0	0	5957	768	27	4	1379	4	FIZ1	19	56109113	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	219553	56109113	3019870	504	79988											
EPN1	29924	broad.mit.edu	37	chr19	56204360	56204360	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgacgagttctctgacttTgaccgactccgcacggcact	9	16	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56204360	G	G	56204360	3	3	72	1	0	0	0	0	1	0	0	0	5227	1809	63	5	1592	5	EPN1	19	56204360	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	95247	56204360	2924623	505	79989											
RSPO4	343637	broad.mit.edu	37	chr20	948637	948637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggatgccgaagtacccaGggggacagtcgtgcaggcac	16	12	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	948637	T	T	948637	3	4	72	1	0	0	0	0	1	0	0	0	13823	1000	35	2	496	2	RSPO4	20	948637	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08		948637	62076883	506	79990											
UBOX5	22888	broad.mit.edu	37	chr20	3095974	3095974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agccggtgccaggcctccagGaagtgttgctccctcttgtg	13	13	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3095974	T	T	3095974	3	4	72	1	0	0	0	0	1	0	0	0	17020	1174	41	3	239	3	UBOX5	20	3095974	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2147337	3095974	59929546	507	79991											
PLCB1	23236	broad.mit.edu	37	chr20	8745730	8745730	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaggtagccgctcttcttTccatctggatgttcagccct	9	12	4	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8745730	C	C	8745730	1	2	72	0	1	0	0	0	0	0	0	0	12122	1798	62	5		5	PLCB1	20	8745730	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	5649756	8745730	54279790	508	79992											
SEL1L2	80343	broad.mit.edu	37	chr20	13868569	13868569	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatacaaatttggttccaaGaatattttgtttacaaacca	5	7	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13868569	C	C	13868569	1	2	72	0	1	0	0	0	0	0	0	0	14124	957	33	4		4	SEL1L2	20	13868569	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5122839	13868569	49156951	509	79993											
SEC23B	10483	broad.mit.edu	37	chr20	18516246	18516246	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttcattagcaattaaccAcagggatggttttctggttt	8	7	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18516246	G	G	18516246	1	3	72	0	1	0	0	0	0	0	0	0	14105	174	6	5		5	SEC23B	20	18516246	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	4647677	18516246	44509274	510	79994											
ACSS1	84532	broad.mit.edu	37	chr20	24994697	24994697	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggccgtggtgcgatgcagAtgccacctgtttctgcaggt	15	10	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24994697	T	T	24994697	3	4	72	1	0	0	0	0	1	0	0	0	188	333	12	5	741	5	ACSS1	20	24994697	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	6478451	24994697	38030823	511	79995											
NINL	22981	broad.mit.edu	37	chr20	25485523	25485523	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcctgctgtgcccctcaCctctttctcgagtccctgga	10	16	3	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25485523	A	A	25485523	5	1	72	1	0	0	0	0	0	0	1	0	10515	521	18	3	3515	3	NINL	20	25485523	Splice_Site	SNP	C	TCGA-17-Z043-01A-01W-0746-08	490826	25485523	37539997	512	79996											
TTLL9	164395	broad.mit.edu	37	chr20	30497669	30497669	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagatgccttgcgagtacCacctgtttgtagaggagttt	12	7	0	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30497669	T	T	30497669	3	4	72	1	0	0	0	0	1	0	0	0	16860	594	21	4	466	4	TTLL9	20	30497669	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	5012146	30497669	32527851	513	79997											
RPN2	6185	broad.mit.edu	37	chr20	35827289	35827289	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacatgggagtgttgtaccGaagttttgcaaacatttcat	9	7	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35827289	A	A	35827289	1	1	72	0	1	0	0	0	0	0	0	0	13719	1073	37	4		4	RPN2	20	35827289	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5329620	35827289	27198231	514	79998											
SEMG1	6406	broad.mit.edu	37	chr20	43836133	43836133	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaggcagtttttctatTcaatacacatatcatgtaga	5	8	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43836133	C	C	43836133	2	2	72	1	0	0	0	0	0	0	0	1	14157	1771	62	5		5	SEMG1	20	43836133	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	8008844	43836133	19189387	515	79999											
ZSWIM3	140831	broad.mit.edu	37	chr20	44506136	44506136	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctaccacacaacccgactCttggagaagaagttgcatcg	8	12	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44506136	T	T	44506136	2	4	72	1	0	0	0	0	0	0	0	1	18371	900	32	4		4	ZSWIM3	20	44506136	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	670003	44506136	18519384	516	80000											
MMP9	4318	broad.mit.edu	37	chr20	44639914	44639914	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgcagtaccacggccaActacgacaccgacgaccggt	11	15	0	0	rs144229833		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44639914	G	G	44639914	3	3	72	1	0	0	0	0	1	0	0	0	9763	43	2	5	800	5	MMP9	20	44639914	Missense_Mutation	SNP	A	TCGA-17-Z043-01A-01W-0746-08	133778	44639914	18385606	517	80001											
NFATC2	4773	broad.mit.edu	37	chr20	50091948	50091948	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccctgccacctgccccctGctcgcttctccatgaagacc	6	20	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50091948	A	A	50091948	1	1	72	0	1	0	0	0	0	0	0	0	10457	1334	46	4		4	NFATC2	20	50091948	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	5452034	50091948	12933572	518	80002											
BMP7	655	broad.mit.edu	37	chr20	55803116	55803117	+	Intron	DNP	GG	TT	TT													ctgaatttgttgtcggtcatGgttttaaggaagtgacatac							TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55803117	TT	TT	55803116	1	4	72	0	1	0	0	0	0	0	0	0	1471	1363	47	2		2	BMP7	20	55803116	Intron	DNP	GG	TCGA-17-Z043-01A-01W-0746-08	5711168	55803116	7222404	519	80003											
ZNF831	128611	broad.mit.edu	37	chr20	57769599	57769599	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacccaaaacccctttccCtcactgaaggctgagccgcg	8	17	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57769599	A	A	57769599	2	1	72	1	0	0	0	0	0	0	0	1	18314	668	24	2		2	ZNF831	20	57769599	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	1966483	57769599	5255921	520	80004											
BAGE2	85319	broad.mit.edu	37	chr21	11026930	11026930	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagataaaacattttattaaAtgttatacaaacacttcttt	3	5	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11026930	T	T	11026930	1	4	72	0	1	0	0	0	0	0	0	0	1297	116	4	5		5	BAGE2	21	11026930	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08		11026930	37102965	521	80005											
BAGE2	85319	broad.mit.edu	37	chr21	11094409	11094409	+	Intron	DEL	C	-	-													atacttattttcttagcatgCaaaaattatttacaaatcat					rs61674188		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11094409	-	-	11094409	6	5	72	0	1	1	0	1	0	0	0	0	1297	725	25	0		0	BAGE2	21	11094409	Intron	DEL	C	TCGA-17-Z043-01A-01W-0746-08	67479	11094409	37035486	522	80006											
USP25	29761	broad.mit.edu	37	chr21	17203979	17203979	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagggtggtgtgtatttttAaatagtcataaaagtggctc	11	3	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17203979	C	C	17203979	1	2	72	0	1	0	0	0	0	0	0	0	17182	377	13	5		5	USP25	21	17203979	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	6109570	17203979	30925916	523	80007											
ADAMTS5	11096	broad.mit.edu	37	chr21	28337427	28337427	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcatttaaggcaaaaatttCtgcggggctaacgtgaatac	11	7	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28337427	G	G	28337427	1	3	72	0	1	0	0	0	0	0	0	0	269	928	32	4		4	ADAMTS5	21	28337427	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	11133448	28337427	19792468	524	80008											
SFRS15	57466	broad.mit.edu	37	chr21	33073489	33073489	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggatctgctgaagcttaAagaatgggaaaaccaataaa	10	5	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33073489	G	G	33073489	1	3	72	0	1	0	0	0	0	0	0	0	14284	29	1	5		5	SFRS15	21	33073489	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	4736062	33073489	15056406	525	80009											
FAM3B	54097	broad.mit.edu	37	chr21	42695102	42695102	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggccctgacggctttatatCaggaaggaggaggagagaag	17	6	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42695102	T	T	42695102	1	4	72	0	1	0	0	0	0	0	0	0	5608	841	29	4		4	FAM3B	21	42695102	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	9621613	42695102	5434793	526	80010											
CECR2	27443	broad.mit.edu	37	chr22	18020588	18020588	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgcaaaatacttacgTgtatgtatggaatctttttc	6	8	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18020588	G	G	18020588	1	3	72	0	1	0	0	0	0	0	0	0	3236	1711	59	5		5	CECR2	22	18020588	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08		18020588	33283978	527	80011											
PRAME	23532	broad.mit.edu	37	chr22	22892423	22892423	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagctgcaccattttcagGatcatcttgatatcctgcat	6	12	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22892423	T	T	22892423	2	4	72	1	0	0	0	0	0	0	0	1	12525	1164	41	3		3	PRAME	22	22892423	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4871835	22892423	28412143	528	80012											
SGSM1	129049	broad.mit.edu	37	chr22	25264768	25264768	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcagacaaagatgatgatGaggccacggattatgtgttc	11	7	1	5			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25264768	T	T	25264768	4	4	72	1	0	0	0	0	0	1	0	0	14335	1291	45	3	1283	3	SGSM1	22	25264768	Nonsense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	2372345	25264768	26039798	529	80013											
SEZ6L	23544	broad.mit.edu	37	chr22	26618487	26618487	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcttgtgttctagccacttGacataggaccttctagcaat	7	10	3	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26618487	A	A	26618487	1	1	72	0	1	0	0	0	0	0	0	0	14256	1305	45	4		4	SEZ6L	22	26618487	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1353719	26618487	24686079	530	80014											
NHP2L1	4809	broad.mit.edu	37	chr22	42076369	42076369	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggattcacatcagcctcagtCtatgggggggacataaaaat	11	8	4	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42076369	G	G	42076369	5	3	72	1	0	0	0	0	0	0	1	0	10505	927	32	4	391	4	NHP2L1	22	42076369	Splice_Site	SNP	C	TCGA-17-Z043-01A-01W-0746-08	15457882	42076369	9228197	531	80015											
FAM9A	171482	broad.mit.edu	37	chrX	8766577	8766577	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagacgctgttgtggacatCttttgtagagaaacttatta	10	5	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8766577	G	G	8766577	1	3	72	0	1	0	0	0	0	0	0	0	5716	928	32	4		4	FAM9A	23	8766577	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08		8766577	146503983	532	80016											
BEND2	139105	broad.mit.edu	37	chrX	18213466	18213466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggatatggggcactcGtatttcccgataaagctggg	14	8	0	0	rs28496595		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18213466	T	T	18213466	3	4	72	1	0	0	0	0	1	0	0	0	1403	1145	40	3	1327	3	BEND2	23	18213466	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	9446889	18213466	137057094	533	80017											
PHKA2	5256	broad.mit.edu	37	chrX	18926946	18926946	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaagaatgtacagaatgTctgcttggtcctgtaggttc	10	7	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18926946	C	C	18926946	3	2	72	1	0	0	0	0	1	0	0	0	11939	1667	58	5	1426	5	PHKA2	23	18926946	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	713480	18926946	136343614	534	80018											
CLCN5	1184	broad.mit.edu	37	chrX	49775325	49775325	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagagtgctttctgaatGcagtgcacccaggcaaggat	14	8	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49775325	T	T	49775325	1	4	72	0	1	0	0	0	0	0	0	0	3497	1334	46	3		3	CLCN5	23	49775325	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	30848379	49775325	105495235	535	80019											
AKAP4	8852	broad.mit.edu	37	chrX	49957059	49957059	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagctgcttctgcaagcTatttgtagagcactgattat	10	8	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49957059	A	A	49957059	3	1	72	1	0	0	0	0	1	0	0	0	453	1522	53	5	267	5	AKAP4	23	49957059	Missense_Mutation	SNP	T	TCGA-17-Z043-01A-01W-0746-08	181734	49957059	105313501	536	80020											
MTMR8	55613	broad.mit.edu	37	chrX	63444978	63444978	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagactgcggccaaatagaGggggccagaacatgaagcta	14	8	0	4			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63444978	A	A	63444978	3	1	72	1	0	0	0	0	1	0	0	0	10043	1000	35	4		4	MTMR8	23	63444978	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	13487919	63444978	91825582	537	80021											
NAP1L2	4674	broad.mit.edu	37	chrX	72433353	72433353	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcacagcctgtggaatactCaatcgcagttcccctatagg	8	13	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72433353	A	A	72433353	4	1	72	1	0	0	0	0	0	1	0	0	10251	835	29	3	410	3	NAP1L2	23	72433353	Nonsense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	8988375	72433353	82837207	538	80022											
DACH2	117154	broad.mit.edu	37	chrX	85416100	85416100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggcacaaatgctactgtGttggggttgtagccaatttt	11	6	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85416100	T	T	85416100	1	4	72	0	1	0	0	0	0	0	0	0	4254	1392	48	3		3	DACH2	23	85416100	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	12982747	85416100	69854460	539	80023											
CXorf57	55086	broad.mit.edu	37	chrX	105865786	105865786	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagaaggagtcactttagGtatgatcaagctactatttt	9	6	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105865786	A	A	105865786	1	1	72	0	1	0	0	0	0	0	0	0	4146	1276	44	4		4	CXorf57	23	105865786	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	20449686	105865786	49404774	540	80024											
DCX	1641	broad.mit.edu	37	chrX	110546731	110546731	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacttatttatttaacattgGgaatttatctaacattgaaa	5	4	1	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110546731	C	C	110546731	1	2	72	0	1	0	0	0	0	0	0	0	4351	1247	43	4		4	DCX	23	110546731	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	4680945	110546731	44723829	541	80025											
ZNF280C	55609	broad.mit.edu	37	chrX	129350196	129350196	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaagggtcccaaaacatttCcaatggggcaaaaaatagtc	9	9	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129350196	A	A	129350196	1	1	72	0	1	0	0	0	0	0	0	0	17942	870	30	3		3	ZNF280C	23	129350196	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	18803465	129350196	25920364	542	80026											
GPR112	139378	broad.mit.edu	37	chrX	135432048	135432048	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttgacaacactaccctcTgctactatgagcaccatact	4	14	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135432048	C	C	135432048	2	2	72	1	0	0	0	0	0	0	0	1	6694	1567	55	5		5	GPR112	23	135432048	Silent	SNP	T	TCGA-17-Z043-01A-01W-0746-08	6081852	135432048	19838512	543	80027											
GPR112	139378	broad.mit.edu	37	chrX	135455366	135455366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatcccagggaagattcGtatataatctttagtaggct	9	7	1	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135455366	T	T	135455366	1	4	72	0	1	0	0	0	0	0	0	0	6694	1160	40	3		3	GPR112	23	135455366	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	23318	135455366	19815194	544	80028											
FGF13	2258	broad.mit.edu	37	chrX	137821488	137821488	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctacatttggagcagacaCagagagagaggagatcagag	14	6	2	5			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137821488	A	A	137821488	1	1	72	0	1	0	0	0	0	0	0	0	5899	493	17	3		3	FGF13	23	137821488	5'UTR	SNP	C	TCGA-17-Z043-01A-01W-0746-08	2366122	137821488	17449072	545	80029											
PASD1	139135	broad.mit.edu	37	chrX	150842789	150842789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagctcagtacatttgacGgcagttagtcacatgatggt	10	8	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150842789	T	T	150842789	1	4	72	0	1	0	0	0	0	0	0	0	11565	1131	39	1		1	PASD1	23	150842789	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	13021301	150842789	4427771	546	80030											
MAGEA10	4109	broad.mit.edu	37	chrX	151303501	151303501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaggacaaaggagtggcCagtgggatccacttccttta	12	9	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151303501	A	A	151303501	3	1	72	1	0	0	0	0	1	0	0	0	9252	594	21	2	521	2	MAGEA10	23	151303501	Missense_Mutation	SNP	C	TCGA-17-Z043-01A-01W-0746-08	460712	151303501	3967059	547	80031											
GABRQ	55879	broad.mit.edu	37	chrX	151820167	151820167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagtcgaggacctcggcgCcagcctaggcgacacaggag	14	13	0	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151820167	A	A	151820167	2	1	72	1	0	0	0	0	0	0	0	1	6235	726	26	3		3	GABRQ	23	151820167	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	516666	151820167	3450393	548	80032											
MAGEA12	4111	broad.mit.edu	37	chrX	151896836	151896836	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacattatggaagttaaaCtgctttacttaaagtcaact	5	8	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151896836	T	T	151896836	1	4	72	0	1	0	0	0	0	0	0	0	9254	580	20	4		4	MAGEA12	23	151896836	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	76669	151896836	3373724	549	80033											
MAGEA3	4102	broad.mit.edu	37	chrX	151935513	151935513	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcctcccagattttctcCtcaggggcacagtcgccctc	8	17	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151935513	T	T	151935513	2	4	72	1	0	0	0	0	0	0	0	1	9257	680	24	4		4	MAGEA3	23	151935513	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	38677	151935513	3335047	550	80034											
PNCK	139728	broad.mit.edu	37	chrX	152936415	152936415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggtgaacctcttctggGggtctcgctccagaaggtgc	15	11	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152936415	T	T	152936415	3	4	72	1	0	0	0	0	1	0	0	0	12240	1232	43	2	279	2	PNCK	23	152936415	Missense_Mutation	SNP	G	TCGA-17-Z043-01A-01W-0746-08	1000902	152936415	2334145	551	80035											
PNCK	139728	broad.mit.edu	37	chrX	152936707	152936707	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacccagcaggggcaggcaGgcaggagacaagccttccca	13	14	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152936707	A	A	152936707	1	1	72	0	1	0	0	0	0	0	0	0	12240	1015	35	4		4	PNCK	23	152936707	Intron	SNP	G	TCGA-17-Z043-01A-01W-0746-08	292	152936707	2333853	552	80036											
OPN1LW	5956	broad.mit.edu	37	chrX	153421993	153421993	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacaaccccgttatctatgtCtttatgaaccggcaggtaag	8	10	2	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153421993	A	A	153421993	2	1	72	1	0	0	0	0	0	0	0	1	10971	900	32	3		3	OPN1LW	23	153421993	Silent	SNP	C	TCGA-17-Z043-01A-01W-0746-08	485286	153421993	1848567	553	80037											
GDI1	2664	broad.mit.edu	37	chrX	153668565	153668565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgcctgctgtccccctgCcccgcatgtctcttgtactc	7	19	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153668565	A	A	153668565	1	1	72	0	1	0	0	0	0	0	0	0	6384	754	26	3		3	GDI1	23	153668565	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	246572	153668565	1601995	554	80038											
GAB3	139716	broad.mit.edu	37	chrX	153925387	153925387	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtgctggatgaggctcTtttgagcaatcagtcttacc	11	9	4	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153925387	C	C	153925387	1	2	72	0	1	0	0	0	0	0	0	0	6210	1624	56	5		5	GAB3	23	153925387	Intron	SNP	T	TCGA-17-Z043-01A-01W-0746-08	256822	153925387	1345173	555	80039											
DKC1	1736	broad.mit.edu	37	chrX	153996853	153996853	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccctgttctgttaattaAactttgggacattaaaatgg	7	7	1	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153996853	T	T	153996853	1	4	72	0	1	0	0	0	0	0	0	0	4582	29	1	5		5	DKC1	23	153996853	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	71466	153996853	1273707	556	80040											
MPP1	4354	broad.mit.edu	37	chrX	154007590	154007590	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcgtactggctgcggatGgcctcagagtccttctgcag	14	11	2	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154007590	T	T	154007590	2	4	72	1	0	0	0	0	0	0	0	1	9827	1335	47	2		2	MPP1	23	154007590	Silent	SNP	G	TCGA-17-Z043-01A-01W-0746-08	10737	154007590	1262970	557	80041											
F8	2157	broad.mit.edu	37	chrX	154137324	154137324	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgttggcgagtcattttcgCtgtcacaagccatattgcca	9	12	2	0			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154137324	T	T	154137324	1	4	72	0	1	0	0	0	0	0	0	0	5393	812	28	4		4	F8	23	154137324	Intron	SNP	C	TCGA-17-Z043-01A-01W-0746-08	129734	154137324	1133236	558	80042											
TMLHE	55217	broad.mit.edu	37	chrX	154741186	154741186	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgagttaaggtatttcaaAatgatcatgtttctagggga	10	4	3	2			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154741186	T	T	154741186	1	4	72	0	1	0	0	0	0	0	0	0	16355	29	1	5		5	TMLHE	23	154741186	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	603862	154741186	529374	559	80043											
IL9R	3581	broad.mit.edu	37	chrX	155233310	155233310	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatgccaggacagtgtagcAgccccgtggtgctgacaaat	12	11	0	1			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155233310	T	T	155233310	1	4	72	0	1	0	0	0	0	0	0	0	7778	203	7	5		5	IL9R	23	155233310	Intron	SNP	A	TCGA-17-Z043-01A-01W-0746-08	492124	155233310	37250	560	80044											
CAMTA1	23261	broad.mit.edu	37	chr1	7060697	7060697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggttctgcatgatgtgGcctctcttggctctgacttt	10	11	3	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7060697	T	T	7060697	1	4	73	0	1	0	0	0	0	0	0	0	2639	1218	42	3		3	CAMTA1	1	7060697	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08		7060697	242189924	1	80045											
PTCHD2	57540	broad.mit.edu	37	chr1	11574578	11574578	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctacatcctcacctcctGctcaggtagggcttctctca	8	15	5	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11574578	C	C	11574578	3	2	73	1	0	0	0	0	1	0	0	0	12839	1319	46	4	1458	4	PTCHD2	1	11574578	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4513881	11574578	237676043	2	80046											
PRAMEF12	390999	broad.mit.edu	37	chr1	12835027	12835027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatgagcctccaggcccCacctagactcctggagctgg	12	15	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12835027	A	A	12835027	3	1	73	1	0	0	0	0	1	0	0	0	12529	594	21	2	19	2	PRAMEF12	1	12835027	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1260449	12835027	236415594	3	80047											
IGSF21	84966	broad.mit.edu	37	chr1	18562707	18562707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatcatgggggcagcttcCcccatactgttctcctggta	10	12	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18562707	A	A	18562707	1	1	73	0	1	0	0	0	0	0	0	0	7669	638	22	2		2	IGSF21	1	18562707	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	5727680	18562707	230687914	4	80048											
TMCO4	255104	broad.mit.edu	37	chr1	20097886	20097886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccttcacctcccaggCcgctcgcaaaagcagtcatg	8	17	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20097886	A	A	20097886	3	1	73	1	0	0	0	0	1	0	0	0	16121	739	26	3	1683	3	TMCO4	1	20097886	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1535179	20097886	229152735	5	80049											
SYF2	25949	broad.mit.edu	37	chr1	25553878	25553879	+	Intron	DEL	AC	-	-													ttctatttatgtacatgtatAcacacacacacacacaaata							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25553879	-	-	25553878	6	5	73	0	1	1	0	1	0	0	0	0	15556	406	14	0		0	SYF2	1	25553878	Intron	DEL	AC	TCGA-17-Z044-01A-01W-0746-08	5455992	25553878	223696743	6	80050											
AIM1L	55057	broad.mit.edu	37	chr1	26672594	26672594	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccgccggtccacatgaccTcccaccactgtggtggtccg	10	17	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26672594	C	C	26672594	1	2	73	0	1	0	0	0	0	0	0	0	431	1566	54	5		5	AIM1L	1	26672594	5'Flank	SNP	T	TCGA-17-Z044-01A-01W-0746-08	1118716	26672594	222578027	7	80051											
C1orf94	84970	broad.mit.edu	37	chr1	34684404	34684404	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccttagcccttggatcagGactaggggctctgatttttg	11	10	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34684404	T	T	34684404	1	4	73	0	1	0	0	0	0	0	0	0	2093	1189	41	3		3	C1orf94	1	34684404	3'UTR	SNP	G	TCGA-17-Z044-01A-01W-0746-08	8011810	34684404	214566217	8	80052											
GJB5	2709	broad.mit.edu	37	chr1	35223435	35223435	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaagtgccacgcagatccAtgtcccaatatagtggactg	10	11	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35223435	G	G	35223435	2	3	73	1	0	0	0	0	0	0	0	1	6475	204	8	5		5	GJB5	1	35223435	Silent	SNP	A	TCGA-17-Z044-01A-01W-0746-08	539031	35223435	214027186	9	80053			1	61		3	3	284	N	C_A	6.982075e-06
GJB5	2709	broad.mit.edu	37	chr1	35223474	35223474	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcatctccaagccctcAgagaagaacattttcaccct	5	14	4	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35223474	G	G	35223474	2	3	73	1	0	0	0	0	0	0	0	1	6475	175	7	5		5	GJB5	1	35223474	Silent	SNP	A	TCGA-17-Z044-01A-01W-0746-08	39	35223474	214027147	10	80054			1	61		3	3	284	N	C_A	6.982075e-06
GJB5	2709	broad.mit.edu	37	chr1	35223718	35223718	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctcctctcttaccagacCgcccccgagaccatgtgaag	7	17	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35223718	T	T	35223718	3	4	73	1	0	0	0	0	1	0	0	0	6475	652	23	4	789	4	GJB5	1	35223718	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	244	35223718	214026903	11	80055			1	61		3	3	284	N	C_A	6.982075e-06
EIF2C1	26523	broad.mit.edu	37	chr1	36366918	36366918	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atattttctaatttacctatCaaatgatactcaggaggaga	6	6	3	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36366918	T	T	36366918	1	4	73	0	1	0	0	0	0	0	0	0	5045	841	29	4		4	EIF2C1	1	36366918	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1143200	36366918	212883703	12	80056											
GRIK3	2899	broad.mit.edu	37	chr1	37272795	37272795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctaagaccaggtccagttGgtaggatgcaatgcctatgc	11	11	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37272795	A	A	37272795	1	1	73	0	1	0	0	0	0	0	0	0	6841	1363	47	4		4	GRIK3	1	37272795	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	905877	37272795	211977826	13	80057											
RNF220	55182	broad.mit.edu	37	chr1	44989965	44989965	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agataattagtccattacgaCtctcccacctcgggtaggtg	9	11	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44989965	T	T	44989965	1	4	73	0	1	0	0	0	0	0	0	0	13594	580	20	4		4	RNF220	1	44989965	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7717170	44989965	204260656	14	80058											
TOE1	114034	broad.mit.edu	37	chr1	45807214	45807214	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctatcctttccctgggcctCgcctgcttcaagcggcagcc	9	17	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45807214	T	T	45807214	2	4	73	1	0	0	0	0	0	0	0	1	16472	871	31	4		4	TOE1	1	45807214	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	817249	45807214	203443407	15	80059											
ELAVL4	1996	broad.mit.edu	37	chr1	50618208	50618208	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactgaaatttccacacatTatctaaaaatgtaattcatc	2	8	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50618208	C	C	50618208	1	2	73	0	1	0	0	0	0	0	0	0	5094	1769	61	5		5	ELAVL4	1	50618208	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4810994	50618208	198632413	16	80060											
DAB1	1600	broad.mit.edu	37	chr1	58522161	58522161	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctttgtcatcttggaggCacggaccagagagagctcat	11	9	4	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58522161	G	G	58522161	1	3	73	0	1	0	0	0	0	0	0	0	4250	725	25	4		4	DAB1	1	58522161	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7903953	58522161	190728460	17	80061											
USP33	23032	broad.mit.edu	37	chr1	78187556	78187556	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaggcagcaagacaatcTtgcaaggttactactggacc	10	9	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78187556	C	C	78187556	2	2	73	1	0	0	0	0	0	0	0	1	17191	1606	56	5		5	USP33	1	78187556	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08	19665395	78187556	171063065	18	80062											
RPAP2	79871	broad.mit.edu	37	chr1	92765680	92765680	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtattttaatcttatgagaCcgctgtctgtatgctgtccg	9	8	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92765680	G	G	92765680	1	3	73	0	1	0	0	0	0	0	0	0	13653	522	18	4		4	RPAP2	1	92765680	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	14578124	92765680	156484941	19	80063											
AGL	178	broad.mit.edu	37	chr1	100387286	100387286	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaatgccttatatgcacaGgctcaagttgttttaaaaat	7	6	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100387286	T	T	100387286	1	4	73	0	1	0	0	0	0	0	0	0	384	1015	35	2		2	AGL	1	100387286	3'UTR	SNP	G	TCGA-17-Z044-01A-01W-0746-08	7621606	100387286	148863335	20	80064											
COL11A1	1301	broad.mit.edu	37	chr1	103455195	103455195	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtaacctaaaatattgctAtaaaaatttatgtgctgata	6	4	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103455195	G	G	103455195	1	3	73	0	1	0	0	0	0	0	0	0	3699	464	16	5		5	COL11A1	1	103455195	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	3067909	103455195	145795426	21	80065											
NTNG1	22854	broad.mit.edu	37	chr1	107856461	107856461	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataatgtggattcttttaTaattcttttaagtggaatct	7	3	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107856461	G	G	107856461	1	3	73	0	1	0	0	0	0	0	0	0	10799	1421	49	5		5	NTNG1	1	107856461	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4401266	107856461	141394160	22	80066											
FAM102B	284611	broad.mit.edu	37	chr1	109155083	109155083	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accccatctaagtcacaaatGcagtgaaaagtaacaaatgt	6	9	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109155083	C	C	109155083	1	2	73	0	1	0	0	0	0	0	0	0	5429	1334	46	4		4	FAM102B	1	109155083	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1298622	109155083	140095538	23	80067											
PDE4DIP	9659	broad.mit.edu	37	chr1	144995542	144995542	+	5'Flank	DEL	C	-	-													agctacccgcaaagaaagagCaaatcttctagctcagcgga					rs60566131		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144995542	-	-	144995542	6	5	73	0	1	1	0	1	0	0	0	0	11737	725	25	0		0	PDE4DIP	1	144995542	5'Flank	DEL	C	TCGA-17-Z044-01A-01W-0746-08	35840459	144995542	104255079	24	80068											
NBPF9	400818	broad.mit.edu	37	chr1	145075107	145075107	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagagggaatcaccacccaCcccaccctgcgatctgtatc	8	16	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145075107	T	T	145075107	1	4	73	0	1	0	0	0	0	0	0	0	10294	522	18	4		4	NBPF9	1	145075107	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	79565	145075107	104175514	25	80069											
NBPF9	400818	broad.mit.edu	37	chr1	145200637	145200637	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaggtgcatagtactccaTagcaccctttcatcttcctt	5	13	2	0	rs2794183	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145200637	G	G	145200637	1	3	73	0	1	0	0	0	0	0	0	0	10294	1421	49	5		5	NBPF9	1	145200637	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	125530	145200637	104049984	26	80070											
NBPF10	100132406	broad.mit.edu	37	chr1	145311565	145311565	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgtgtgtgtgtgtgtgTgtgtgtgtgtgtgtgtgtgt	19	1	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145311565	A	A	145311565	1	1	73	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145311565	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	110928	145311565	103939056	27	80071											
LOC200030	200030	broad.mit.edu	37	chr1	148001285	148001286	+	Intron	INS	-	A	A													gatcctctccatcatttttgINSaaaagagtatttttcctcag							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148001286	A	A	148001285	6	5	73	0	1	1	1	0	0	0	0	0	8950	1305	45	0		0	LOC200030	1	148001285	Intron	INS	-	TCGA-17-Z044-01A-01W-0746-08	2689720	148001285	101249336	28	80072											
LCE4A	199834	broad.mit.edu	37	chr1	152681701	152681701	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctgggggctgtggttgCtgcagctctgagggaggtgg	20	7	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152681701	A	A	152681701	4	1	73	1	0	0	0	0	0	1	0	0	8746	805	28	3	152	3	LCE4A	1	152681701	Nonsense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4680416	152681701	96568920	29	80073											
LCE1B	353132	broad.mit.edu	37	chr1	152785173	152785173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccaccacaggcgccgtaGgtcccactgccacagacccc	10	19	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152785173	T	T	152785173	3	4	73	1	0	0	0	0	1	0	0	0	8732	1000	35	2	253	2	LCE1B	1	152785173	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	103472	152785173	96465448	30	80074											
S100A4	6275	broad.mit.edu	37	chr1	153516257	153516257	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcttcctgggctgcttaTctgggaagccttcaaagaat	9	9	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153516257	C	C	153516257	3	2	73	1	0	0	0	0	1	0	0	0	13891	1435	50	5	25	5	S100A4	1	153516257	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	731084	153516257	95734364	31	80075											
C1orf104	284618	broad.mit.edu	37	chr1	155291221	155291221	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccggacctcttccaggcCcccgccccccttcggagatc	10	21	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155291221	T	T	155291221	3	4	73	1	0	0	0	0	1	0	0	0	1998	623	22	4	655	4	C1orf104	1	155291221	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1774964	155291221	93959400	32	80076											
RIT1	6016	broad.mit.edu	37	chr1	155880486	155880486	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacccagcatcactagttTgtactcccgtgagagcccag	9	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155880486	C	C	155880486	3	2	73	1	0	0	0	0	1	0	0	0	13497	1821	63	5	612	5	RIT1	1	155880486	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	589265	155880486	93370135	33	80077											
ARHGEF2	9181	broad.mit.edu	37	chr1	155939235	155939235	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagttcctaaagcagagccTgcaactgggtgtcagaggca	12	11	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155939235	C	C	155939235	1	2	73	0	1	0	0	0	0	0	0	0	905	1595	55	5		5	ARHGEF2	1	155939235	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	58749	155939235	93311386	34	80078											
PEAR1	375033	broad.mit.edu	37	chr1	156877165	156877165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggaggtgggggcgccCgagaggcagacatgccaccc	19	11	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156877165	A	A	156877165	1	1	73	0	1	0	0	0	0	0	0	0	11806	667	23	1		1	PEAR1	1	156877165	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	937930	156877165	92373456	35	80079											
FCRL2	79368	broad.mit.edu	37	chr1	157716540	157716540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtgttatgatttcttcaCagaagagtagatgacttggg	11	5	2	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157716540	A	A	157716540	3	1	73	1	0	0	0	0	1	0	0	0	5852	478	17	3	17	3	FCRL2	1	157716540	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	839375	157716540	91534081	36	80080											
PBX1	5087	broad.mit.edu	37	chr1	164811057	164811057	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctctgtttttcttcccggCcgttcccaacagtgactggg	10	13	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164811057	T	T	164811057	1	4	73	0	1	0	0	0	0	0	0	0	11586	754	26	4		4	PBX1	1	164811057	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7094517	164811057	84439564	37	80081											
SELP	6403	broad.mit.edu	37	chr1	169580628	169580628	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagagcttgctctagtgcaAgaacttagaagagatcaccc	10	9	2	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169580628	G	G	169580628	1	3	73	0	1	0	0	0	0	0	0	0	14132	87	3	5		5	SELP	1	169580628	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	4769571	169580628	79669993	38	80082											
TNR	7143	broad.mit.edu	37	chr1	175355010	175355010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgctgcttttcctgtatgCtggaaacctcttgcttcctt	8	12	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175355010	A	A	175355010	1	1	73	0	1	0	0	0	0	0	0	0	16461	812	28	3		3	TNR	1	175355010	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	5774382	175355010	73895611	39	80083											
RALGPS2	55103	broad.mit.edu	37	chr1	178809098	178809098	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagctaactatcctaaataTatatgcacccaatacaggag	6	9	0	1	rs150293796		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178809098	C	C	178809098	1	2	73	0	1	0	0	0	0	0	0	0	13126	1421	49	5		5	RALGPS2	1	178809098	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	3454088	178809098	70441523	40	80084											
XPR1	9213	broad.mit.edu	37	chr1	180800104	180800104	+	Intron	DEL	A	-	-													agatgagttaatgcttgcatAaagccttgaggaaaatacac					rs35823570		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180800104	-	-	180800104	6	5	73	0	1	1	0	1	0	0	0	0	17578	377	13	0		0	XPR1	1	180800104	Intron	DEL	A	TCGA-17-Z044-01A-01W-0746-08	1991006	180800104	68450517	41	80085											
MR1	3140	broad.mit.edu	37	chr1	181003033	181003033	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaacctagcaactgatgaCactgcatatcttcccctgtt	5	12	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181003033	T	T	181003033	1	4	73	0	1	0	0	0	0	0	0	0	9846	493	17	4		4	MR1	1	181003033	5'Flank	SNP	C	TCGA-17-Z044-01A-01W-0746-08	202929	181003033	68247588	42	80086											
CACNA1E	777	broad.mit.edu	37	chr1	181570250	181570250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgaaaataggaattccCactaccaccccatgggctag	10	11	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181570250	A	A	181570250	1	1	73	0	1	0	0	0	0	0	0	0	2568	609	21	2		2	CACNA1E	1	181570250	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	567217	181570250	67680371	43	80087											
PTPRC	5788	broad.mit.edu	37	chr1	198677466	198677466	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atattatttaatcttactctCtgccctttctctcttcctcc	1	14	4	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198677466	A	A	198677466	1	1	73	0	1	0	0	0	0	0	0	0	12905	928	32	3		3	PTPRC	1	198677466	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	17107216	198677466	50573155	44	80088											
OBSCN	84033	broad.mit.edu	37	chr1	228482444	228482444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccatagagtcctccagacGgtctgataatcacaatgact	8	11	2	4	rs142425864	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228482444	T	T	228482444	1	4	73	0	1	0	0	0	0	0	0	0	10907	1131	39	1		1	OBSCN	1	228482444	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	29804978	228482444	20768177	45	80089											
AGT	183	broad.mit.edu	37	chr1	230839235	230839235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcacagtgtatgcctgCccctcagtgtaggcaagggt	14	10	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230839235	A	A	230839235	1	1	73	0	1	0	0	0	0	0	0	0	399	754	26	3		3	AGT	1	230839235	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2356791	230839235	18411386	46	80090											
LYST	1130	broad.mit.edu	37	chr1	235865990	235865990	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcacctgggagagtgcctgGcatcacaagagtctaatcag	11	10	4	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235865990	C	C	235865990	1	2	73	0	1	0	0	0	0	0	0	0	9216	1218	42	4		4	LYST	1	235865990	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5026755	235865990	13384631	47	80091											
MTR	4548	broad.mit.edu	37	chr1	236988655	236988655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcttcccaacacctttGgtgactatgatgaaacgcct	8	12	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236988655	T	T	236988655	3	4	73	1	0	0	0	0	1	0	0	0	10052	1348	47	2	921	2	MTR	1	236988655	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1122665	236988655	12261966	48	80092											
FMN2	56776	broad.mit.edu	37	chr1	240389388	240389388	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaccagtgtatgtgaactAtatccaaaggagaggagaga	14	5	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240389388	G	G	240389388	1	3	73	0	1	0	0	0	0	0	0	0	6008	464	16	5		5	FMN2	1	240389388	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	3400733	240389388	8861233	49	80093											
WDR64	128025	broad.mit.edu	37	chr1	241959664	241959664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagggaggtcatgttcaaCgtgaaaaagtaagttagtac	12	4	2	2	rs142269497		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241959664	A	A	241959664	3	1	73	1	0	0	0	0	1	0	0	0	17442	536	19	3	3256	3	WDR64	1	241959664	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1570276	241959664	7290957	50	80094											
C1orf150	148823	broad.mit.edu	37	chr1	247727019	247727019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagcagacactcttgagcCtattgtaataacagattgga	8	7	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247727019	A	A	247727019	1	1	73	0	1	0	0	0	0	0	0	0	2024	696	24	2		2	C1orf150	1	247727019	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	5767355	247727019	1523602	51	80095											
OR2L13	284521	broad.mit.edu	37	chr1	248166871	248166871	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgctgatgataacaggaTcttggatcataggctcgatc	12	7	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248166871	C	C	248166871	1	2	73	0	1	0	0	0	0	0	0	0	11100	1450	50	5		5	OR2L13	1	248166871	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	439852	248166871	1083750	52	80096											
KLF11	8462	broad.mit.edu	37	chr2	10188051	10188051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccagactccagattgccGgctttctgacagcagagaag	10	12	1	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10188051	T	T	10188051	3	4	73	1	0	0	0	0	1	0	0	0	8410	1116	39	1	597	1	KLF11	2	10188051	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08		10188051	233011322	53	80097											
LPIN1	23175	broad.mit.edu	37	chr2	11945636	11945636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatatgttatatatgccaAgtgattttctgtagactaaa	6	5	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11945636	T	T	11945636	1	4	73	0	1	0	0	0	0	0	0	0	9005	87	3	5		5	LPIN1	2	11945636	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1757585	11945636	231253737	54	80098											
NBAS	51594	broad.mit.edu	37	chr2	15628980	15628980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtattgtcaatactcacCcttaagagagtatcattcta	5	8	4	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15628980	A	A	15628980	1	1	73	0	1	0	0	0	0	0	0	0	10280	638	22	2		2	NBAS	2	15628980	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3683344	15628980	227570393	55	80099											
APOB	338	broad.mit.edu	37	chr2	21225814	21225814	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccctggaaactggcttgGccttcctgagtcaacagttc	10	12	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21225814	A	A	21225814	2	1	73	1	0	0	0	0	0	0	0	1	787	1190	42	4		4	APOB	2	21225814	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5596834	21225814	221973559	56	80100											
APOB	338	broad.mit.edu	37	chr2	21229634	21229634	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcaatgacagatgaagatGaagaaaggagatgagcaaca	11	5	1	8			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21229634	T	T	21229634	4	4	73	1	0	0	0	0	0	1	0	0	787	1294	45	3	3601	3	APOB	2	21229634	Nonsense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	3820	21229634	221969739	57	80101											
CENPA	1058	broad.mit.edu	37	chr2	27016112	27016112	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaggatgtgcaactggccCggaggatccggggccttgag	16	10	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016112	T	T	27016112	3	4	73	1	0	0	0	0	1	0	0	0	3256	643	23	4	402	4	CENPA	2	27016112	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	5786478	27016112	216183261	58	80102											
ALK	238	broad.mit.edu	37	chr2	29498144	29498144	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggtgagggttgatttcagGgtgagagatgatttcacact	14	4	2	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29498144	A	A	29498144	1	1	73	0	1	0	0	0	0	0	0	0	525	1247	43	4		4	ALK	2	29498144	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2482032	29498144	213701229	59	80103											
XDH	7498	broad.mit.edu	37	chr2	31604603	31604603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaacggactaaaacaagCagagagcatgcagtgagagc	11	10	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31604603	A	A	31604603	1	1	73	0	1	0	0	0	0	0	0	0	17553	725	25	3		3	XDH	2	31604603	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2106459	31604603	211594770	60	80104											
CCDC88A	55704	broad.mit.edu	37	chr2	55602078	55602078	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaactagataattattcatCaagctataacttatgatttg	4	6	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55602078	T	T	55602078	1	4	73	0	1	0	0	0	0	0	0	0	2891	841	29	4		4	CCDC88A	2	55602078	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	23997475	55602078	187597295	61	80105											
RPIA	22934	broad.mit.edu	37	chr2	89034132	89034132	+	Frame_Shift_Del	DEL	G	-	-													tcaatctcatcaagggtggcGggtgagtgttgtgggggctt							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89034132	-	-	89034132	7	5	73	1	0	1	0	1	0	0	0	0	13664	1130	39	0	544	0	RPIA	2	89034132	Frame_Shift_Del	DEL	G	TCGA-17-Z044-01A-01W-0746-08	33432054	89034132	154165241	62	80106											
IL1RL1	9173	broad.mit.edu	37	chr2	102936672	102936672	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttgtgtttactccagtgtCgtctttaaggtggtgaggtc	13	6	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102936672	T	T	102936672	1	4	73	0	1	0	0	0	0	0	0	0	7733	899	31	4		4	IL1RL1	2	102936672	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	13902540	102936672	140262701	63	80107											
IL1RL1	9173	broad.mit.edu	37	chr2	102965694	102965694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttatgggagagatatgCtacctggagaaggtaaagct	13	5	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102965694	A	A	102965694	3	1	73	1	0	0	0	0	1	0	0	0	7733	796	28	3	1324	3	IL1RL1	2	102965694	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	29022	102965694	140233679	64	80108											
RGPD3	653489	broad.mit.edu	37	chr2	107052703	107052703	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttgctgagtttccaggtCtaaaaaatagttcaatttac	6	6	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107052703	A	A	107052703	5	1	73	1	0	0	0	0	0	0	1	0	13395	927	32	3	3690	3	RGPD3	2	107052703	Splice_Site	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4087009	107052703	136146670	65	80109											
CNTNAP5	129684	broad.mit.edu	37	chr2	125281837	125281837	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccctctctctaagtcttcTggacccatcatctctatgct	4	17	6	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125281837	A	A	125281837	1	1	73	0	1	0	0	0	0	0	0	0	3682	1595	55	5		5	CNTNAP5	2	125281837	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	18229134	125281837	117917536	66	80110											
GTDC1	79712	broad.mit.edu	37	chr2	144728256	144728256	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttctccaagtacagacaCgtggaaattgagtcctaagt	10	8	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144728256	T	T	144728256	3	4	73	1	0	0	0	0	1	0	0	0	6916	536	19	4	447	4	GTDC1	2	144728256	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	19446419	144728256	98471117	67	80111											
ZNF804A	91752	broad.mit.edu	37	chr2	185801643	185801643	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaggatgtatctacagaagGactcactgattatgaaattg	9	6	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801643	A	A	185801643	3	1	73	1	0	0	0	0	1	0	0	0	18299	1174	41	4	1534	4	ZNF804A	2	185801643	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	41073387	185801643	57397730	68	80112											
FAM171B	165215	broad.mit.edu	37	chr2	187615817	187615817	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataataattaggtaactaccAcctctgtttacatatgattt	4	7	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187615817	T	T	187615817	1	4	73	0	1	0	0	0	0	0	0	0	5536	174	6	5		5	FAM171B	2	187615817	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1814174	187615817	55583556	69	80113											
ASNSD1	54529	broad.mit.edu	37	chr2	190531044	190531044	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggggtgttttgactacCcagcctgtggaagatgaaag	14	6	0	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190531044	G	G	190531044	2	3	73	1	0	0	0	0	0	0	0	1	1053	610	22	4		4	ASNSD1	2	190531044	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2915227	190531044	52668329	70	80114											
HECW2	57520	broad.mit.edu	37	chr2	197081790	197081790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactgcagcccagaaccacCgaattacaatatgattgtca	6	13	1	2	rs143511416		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197081790	A	A	197081790	3	1	73	1	0	0	0	0	1	0	0	0	7110	652	23	1	294	1	HECW2	2	197081790	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	6550746	197081790	46117583	71	80115											
DGKD	8527	broad.mit.edu	37	chr2	234363425	234363425	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagagagtattacacggagAaatgtgtcatgaacaactat	10	6	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234363425	C	C	234363425	3	2	73	1	0	0	0	0	1	0	0	0	4507	247	9	5	2379	5	DGKD	2	234363425	Missense_Mutation	SNP	A	TCGA-17-Z044-01A-01W-0746-08	37281635	234363425	8835948	72	80116											
HJURP	55355	broad.mit.edu	37	chr2	234749348	234749348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccagggaattgccctggCgtccggagccctggggttct	14	14	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234749348	A	A	234749348	3	1	73	1	0	0	0	0	1	0	0	0	7256	768	27	3	176	3	HJURP	2	234749348	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	385923	234749348	8450025	73	80117											
SUMF1	285362	broad.mit.edu	37	chr3	4298381	4298381	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccagaggtacaaggaggaActggtaccattccttctgaa	10	9	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4298381	G	G	4298381	1	3	73	0	1	0	0	0	0	0	0	0	15503	58	2	5		5	SUMF1	3	4298381	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08		4298381	193724049	74	80118											
RAD18	56852	broad.mit.edu	37	chr3	8940671	8940671	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaggttccaattcctctGgggagtccagctttgattga	11	9	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8940671	A	A	8940671	3	1	73	1	0	0	0	0	1	0	0	0	13088	1348	47	4	270	4	RAD18	3	8940671	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4642290	8940671	189081759	75	80119											
SRGAP3	9901	broad.mit.edu	37	chr3	9113468	9113468	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctactgcctctgatctagtGagtatattggcggggagaac	12	8	3	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9113468	A	A	9113468	1	1	73	0	1	0	0	0	0	0	0	0	15265	1305	45	4		4	SRGAP3	3	9113468	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	172797	9113468	188908962	76	80120											
ATG7	10533	broad.mit.edu	37	chr3	11402264	11402264	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggccccaggagatgtaagTggatttctctatagttccaa	11	8	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11402264	C	C	11402264	1	2	73	0	1	0	0	0	0	0	0	0	1105	1711	59	5		5	ATG7	3	11402264	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	2288796	11402264	186620166	77	80121											
SYN2	6854	broad.mit.edu	37	chr3	12224773	12224773	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctttggaattcagtggctTggagttttgtttttatctct	9	6	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12224773	A	A	12224773	1	1	73	0	1	0	0	0	0	0	0	0	15560	1827	63	5		5	SYN2	3	12224773	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	822509	12224773	185797657	78	80122											
PDCD6IP	10015	broad.mit.edu	37	chr3	33870574	33870574	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgttcatcacccctatcaGcagggacaagtgattgtttt	8	12	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33870574	A	A	33870574	1	1	73	0	1	0	0	0	0	0	0	0	11718	986	34	4		4	PDCD6IP	3	33870574	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	21645801	33870574	164151856	79	80123											
SCN11A	11280	broad.mit.edu	37	chr3	38921358	38921358	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagacagacatccatatgcgGcacacaggaaaagcagcctc	9	12	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38921358	A	A	38921358	1	1	73	0	1	0	0	0	0	0	0	0	14026	1218	42	4		4	SCN11A	3	38921358	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5050784	38921358	159101072	80	80124											
VIPR1	7433	broad.mit.edu	37	chr3	42577577	42577577	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctgaccaccttcccctctCctaggtgcaggcggagctga	11	16	1	2	rs116429753	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42577577	T	T	42577577	1	4	73	0	1	0	0	0	0	0	0	0	17296	870	30	4		4	VIPR1	3	42577577	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3656219	42577577	155444853	81	80125											
MAP4	4134	broad.mit.edu	37	chr3	48019469	48019469	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgtgacagacagaaaaatGaaaaacagatccaaccactg	7	8	0	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48019469	A	A	48019469	1	1	73	0	1	0	0	0	0	0	0	0	9350	1305	45	4		4	MAP4	3	48019469	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5441892	48019469	150002961	82	80126											
BSN	8927	broad.mit.edu	37	chr3	49691540	49691540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcccctgcctcagacatGccacggagccctggtgcccc	10	20	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49691540	T	T	49691540	3	4	73	1	0	0	0	0	1	0	0	0	1539	1319	46	3	4569	3	BSN	3	49691540	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1672071	49691540	148330890	83	80127											
PTPRG	5793	broad.mit.edu	37	chr3	62217042	62217042	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggccgggactggcttgccAaatttttgttttgttgccat	11	8	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62217042	T	T	62217042	1	4	73	0	1	0	0	0	0	0	0	0	12910	145	5	5		5	PTPRG	3	62217042	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	12525502	62217042	135805388	84	80128											
FAM19A1	407738	broad.mit.edu	37	chr3	68134105	68134105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgttagagtcactgctGtatgtactttcctccccatt	6	11	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68134105	T	T	68134105	1	4	73	0	1	0	0	0	0	0	0	0	5578	1392	48	3		3	FAM19A1	3	68134105	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5917063	68134105	129888325	85	80129											
TMF1	7110	broad.mit.edu	37	chr3	69097285	69097285	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatactttcaaacttacagTtggcaccttcatatccgatt	5	10	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69097285	C	C	69097285	3	2	73	1	0	0	0	0	1	0	0	0	16351	1725	60	5	2774	5	TMF1	3	69097285	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	963180	69097285	128925145	86	80130											
EPHA6	285220	broad.mit.edu	37	chr3	96952260	96952260	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaatgacaagttaagaGgttgttgaacaattacactt	8	4	0	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96952260	A	A	96952260	1	1	73	0	1	0	0	0	0	0	0	0	5213	1015	35	4		4	EPHA6	3	96952260	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	27854975	96952260	101070170	87	80131											
DPPA4	55211	broad.mit.edu	37	chr3	109050553	109050553	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataggtaattaggataagcaTtgaaacgtccatcctttaaa	7	6	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109050553	A	A	109050553	1	1	73	0	1	0	0	0	0	0	0	0	4776	1508	52	5		5	DPPA4	3	109050553	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	12098293	109050553	88971877	88	80132											
ZBTB20	26137	broad.mit.edu	37	chr3	114069589	114069589	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagctgttgctgacagtgaTaacagtgctgtccatctcca	11	10	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114069589	A	A	114069589	3	1	73	1	0	0	0	0	1	0	0	0	17655	1406	49	5	897	5	ZBTB20	3	114069589	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	5019036	114069589	83952841	89	80133											
DBR1	51163	broad.mit.edu	37	chr3	137886025	137886025	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagctggacttcctaaTgtgttattttccacttcttg	9	9	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137886025	A	A	137886025	2	1	73	1	0	0	0	0	0	0	0	1	4290	1451	51	5		5	DBR1	3	137886025	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08	23816436	137886025	60136405	90	80134											
CLRN1	7401	broad.mit.edu	37	chr3	150674582	150674582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccacattctgcaaagcCttttctagttttttcctctc	6	13	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150674582	A	A	150674582	1	1	73	0	1	0	0	0	0	0	0	0	3589	696	24	2		2	CLRN1	3	150674582	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	12788557	150674582	47347848	91	80135											
PPM1L	151742	broad.mit.edu	37	chr3	160605415	160605415	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcgctctgtcacccacgCtggagtgcagtggcgcaatc	12	14	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160605415	T	T	160605415	1	4	73	0	1	0	0	0	0	0	0	0	12445	812	28	4		4	PPM1L	3	160605415	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	9930833	160605415	37417015	92	80136											
PIGX	54965	broad.mit.edu	37	chr3	196449332	196449332	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaaagcattgaggacttgCacacctgccgtctcttaatt	10	10	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196449332	T	T	196449332	3	4	73	1	0	0	0	0	1	0	0	0	11998	710	25	4	233	4	PIGX	3	196449332	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	35843917	196449332	1573098	93	80137											
LRCH3	84859	broad.mit.edu	37	chr3	197554193	197554193	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaagcatcaggtaaaccaTagtggaagcatcaggtaaac	11	7	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197554193	C	C	197554193	1	2	73	0	1	0	0	0	0	0	0	0	9021	1421	49	5		5	LRCH3	3	197554193	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	1104861	197554193	468237	94	80138											
ZNF721	170960	broad.mit.edu	37	chr4	436825	436825	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggtaatgactttgccacaTtgcttacatttgtagggttt	10	6	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	436825	C	C	436825	2	2	73	1	0	0	0	0	0	0	0	1	18250	1490	52	5		5	ZNF721	4	436825	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08		436825	190717451	95	80139											
STK32B	55351	broad.mit.edu	37	chr4	5120439	5120439	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctctctgtcttcctgctCagaaggtaaattccacaggg	8	12	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5120439	A	A	5120439	1	1	73	0	1	0	0	0	0	0	0	0	15416	841	29	3		3	STK32B	4	5120439	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4683614	5120439	186033837	96	80140											
AFAP1	60312	broad.mit.edu	37	chr4	7788086	7788086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataacctgaccaccttttaCtccaatcagtcaagtcttta	3	13	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7788086	A	A	7788086	1	1	73	0	1	0	0	0	0	0	0	0	353	580	20	3		3	AFAP1	4	7788086	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2667647	7788086	183366190	97	80141											
C1QTNF7	114905	broad.mit.edu	37	chr4	15444526	15444526	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactcccactcagattctaAagcatttaaagacaattcta	4	10	3	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15444526	T	T	15444526	1	4	73	0	1	0	0	0	0	0	0	0	1988	29	1	5		5	C1QTNF7	4	15444526	3'UTR	SNP	A	TCGA-17-Z044-01A-01W-0746-08	7656440	15444526	175709750	98	80142											
SLIT2	9353	broad.mit.edu	37	chr4	20544378	20544378	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggccagttaattattaTcctgtaaaatggtaaataag	7	5	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20544378	C	C	20544378	1	2	73	0	1	0	0	0	0	0	0	0	14854	1450	50	5		5	SLIT2	4	20544378	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	5099852	20544378	170609898	99	80143											
LRRC66	339977	broad.mit.edu	37	chr4	52860966	52860966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacattgtccttgcttgccCctgagctctcgtcctgcagg	9	15	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52860966	A	A	52860966	3	1	73	1	0	0	0	0	1	0	0	0	9105	623	22	2	424	2	LRRC66	4	52860966	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	32316588	52860966	138293310	100	80144											
SRD5A3	79644	broad.mit.edu	37	chr4	56236422	56236422	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcatggcagtgccactcaAgaaaatgaatctccaaagta	9	9	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56236422	T	T	56236422	1	4	73	0	1	0	0	0	0	0	0	0	15258	87	3	5		5	SRD5A3	4	56236422	3'UTR	SNP	A	TCGA-17-Z044-01A-01W-0746-08	3375456	56236422	134917854	101	80145											
LPHN3	23284	broad.mit.edu	37	chr4	62903541	62903541	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagggaaaacatctggttcTcgaactcctggacgctactc	9	12	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62903541	A	A	62903541	2	1	73	1	0	0	0	0	0	0	0	1	9004	1538	54	5		5	LPHN3	4	62903541	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08	6667119	62903541	128250735	102	80146											
AFF1	4299	broad.mit.edu	37	chr4	87897438	87897438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attactggcattttgcattgCaaggagcccagaggcaggta	12	8	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87897438	A	A	87897438	1	1	73	0	1	0	0	0	0	0	0	0	356	725	25	3		3	AFF1	4	87897438	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	24993897	87897438	103256838	103	80147											
HERC6	55008	broad.mit.edu	37	chr4	89358911	89358911	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattccaaatgggatctccAtacctgtggaccaaaccaac	6	12	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89358911	G	G	89358911	3	3	73	1	0	0	0	0	1	0	0	0	7129	217	8	5	2408	5	HERC6	4	89358911	Missense_Mutation	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1461473	89358911	101795365	104	80148											
GRID2	2895	broad.mit.edu	37	chr4	93743573	93743573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccttgaccagcttgtccCagctacagaggtgatagtgt	11	10	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93743573	A	A	93743573	1	1	73	0	1	0	0	0	0	0	0	0	6838	609	21	2		2	GRID2	4	93743573	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4384662	93743573	97410703	105	80149											
GRID2	2895	broad.mit.edu	37	chr4	94444107	94444107	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcagaactcctatttgagaGagtgacagaaagccaagtga	11	8	0	6			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94444107	T	T	94444107	1	4	73	0	1	0	0	0	0	0	0	0	6838	957	33	3		3	GRID2	4	94444107	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	700534	94444107	96710169	106	80150											
C4orf17	84103	broad.mit.edu	37	chr4	100450863	100450863	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaacctttttttactttcaTgtatctctcttattaggcac	3	10	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100450863	C	C	100450863	1	2	73	0	1	0	0	0	0	0	0	0	2275	1479	51	5		5	C4orf17	4	100450863	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	6006756	100450863	90703413	107	80151											
MTTP	4547	broad.mit.edu	37	chr4	100532530	100532530	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacagcctagacattctcTactcgggttctggcattcta	7	12	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100532530	C	C	100532530	3	2	73	1	0	0	0	0	1	0	0	0	10058	1522	53	5	1963	5	MTTP	4	100532530	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	81667	100532530	90621746	108	80152											
DKK2	27123	broad.mit.edu	37	chr4	107856440	107856440	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcgagccaaagcagggCgaggcattgcctcacttggg	16	10	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107856440	T	T	107856440	1	4	73	0	1	0	0	0	0	0	0	0	4585	783	27	4		4	DKK2	4	107856440	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7323910	107856440	83297836	109	80153											
ALPK1	80216	broad.mit.edu	37	chr4	113348916	113348916	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctcaggagattgggagGcagggagctcagtgctgcgc	16	9	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113348916	T	T	113348916	1	4	73	0	1	0	0	0	0	0	0	0	544	1218	42	3		3	ALPK1	4	113348916	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5492476	113348916	77805360	110	80154											
ANK2	287	broad.mit.edu	37	chr4	114274827	114274827	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagggaaagacatacccccaGatgagacacagagtacacag	10	10	0	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114274827	T	T	114274827	3	4	73	1	0	0	0	0	1	0	0	0	621	942	33	3	5268	3	ANK2	4	114274827	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	925911	114274827	76879449	111	80155											
NDST4	64579	broad.mit.edu	37	chr4	115856267	115856267	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtaagatgtgctgtaaatAaagaaaataaatatgattta	7	2	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115856267	G	G	115856267	1	3	73	0	1	0	0	0	0	0	0	0	10353	377	13	5		5	NDST4	4	115856267	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1581440	115856267	75298009	112	80156											
EXOSC9	5393	broad.mit.edu	37	chr4	122734376	122734376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccttcccaccaaaaaaaCccccacatacaggaaagaag	4	15	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122734376	A	A	122734376	1	1	73	0	1	0	0	0	0	0	0	0	5364	522	18	3		3	EXOSC9	4	122734376	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	6878109	122734376	68419900	113	80157											
MARCH1	55016	broad.mit.edu	37	chr4	164528172	164528172	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagctacctctggccagactAtctcttccctcttctatata	4	14	4	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164528172	T	T	164528172	1	4	73	0	1	0	0	0	0	0	0	0	9390	464	16	5		5	MARCH1	4	164528172	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	41793796	164528172	26626104	114	80158											
DDX60	55601	broad.mit.edu	37	chr4	169169465	169169465	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaagagaataaaacaatTacttcataaaatagcatttt	4	4	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169169465	A	A	169169465	1	1	73	0	1	0	0	0	0	0	0	0	4411	1769	61	5		5	DDX60	4	169169465	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4641293	169169465	21984811	115	80159											
GPM6A	2823	broad.mit.edu	37	chr4	176883152	176883152	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctcttgtatattaacagGggagcacaactgaaaatgtt	11	6	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176883152	A	A	176883152	1	1	73	0	1	0	0	0	0	0	0	0	6680	1247	43	4		4	GPM6A	4	176883152	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	7713687	176883152	14271124	116	80160											
WDR17	116966	broad.mit.edu	37	chr4	177061070	177061070	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatggaatattctgcattGcctggagtcataaagattct	8	7	3	1	rs138006002	byFrequency	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177061070	C	C	177061070	3	2	73	1	0	0	0	0	1	0	0	0	17404	1319	46	4	1497	4	WDR17	4	177061070	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	177918	177061070	14093206	117	80161											
TUBB4Q	56604	broad.mit.edu	37	chr4	190908595	190908595	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcaaaaacctgtaggtGctgttctaatgttagtttat	11	5	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190908595	A	A	190908595	1	1	73	0	1	0	0	0	0	0	0	0	16885	1334	46	4		4	TUBB4Q	4	190908595	5'Flank	SNP	G	TCGA-17-Z044-01A-01W-0746-08	13847525	190908595	245681	118	80162											
CTNND2	1501	broad.mit.edu	37	chr5	10973863	10973863	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccacactgggttacttggtTtcccttgactcagcctgcct	9	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10973863	A	A	10973863	1	1	73	0	1	0	0	0	0	0	0	0	4054	1856	64	5		5	CTNND2	5	10973863	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08		10973863	169941397	119	80163											
CDH18	1016	broad.mit.edu	37	chr5	19721433	19721433	+	Intron	DEL	G	-	-													tgtagcaaacgcttgcatgcGagttatgtgtaaatgcacta							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19721433	-	-	19721433	6	5	73	0	1	1	0	1	0	0	0	0	3133	1073	37	0		0	CDH18	5	19721433	Intron	DEL	G	TCGA-17-Z044-01A-01W-0746-08	8747570	19721433	161193827	120	80164											
CDH9	1007	broad.mit.edu	37	chr5	26940270	26940271	+	Intron	INS	-	A	A													acagagcgagactcagttgcINSaaaaaaaaaaaaagaaagga					rs114288558		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26940271	A	A	26940270	6	5	73	0	1	1	1	0	0	0	0	0	3147	725	25	0		0	CDH9	5	26940270	Intron	INS	-	TCGA-17-Z044-01A-01W-0746-08	7218837	26940270	153974990	121	80165											
FYB	2533	broad.mit.edu	37	chr5	39153585	39153585	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttaatgtttctgggaggTaggcttgggactggtggttg	18	3	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39153585	C	C	39153585	2	2	73	1	0	0	0	0	0	0	0	1	6184	1625	57	5		5	FYB	5	39153585	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08	12213315	39153585	141761675	122	80166											
FYB	2533	broad.mit.edu	37	chr5	39261408	39261408	+	Intron	DEL	A	-	-													tccgaacttaaagtagaattAaaaaaaaaaaaaagaacgtg					rs34116289		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39261408	-	-	39261408	6	5	73	0	1	1	0	1	0	0	0	0	6184	377	13	0		0	FYB	5	39261408	Intron	DEL	A	TCGA-17-Z044-01A-01W-0746-08	107823	39261408	141653852	123	80167											
ADAMTS6	11174	broad.mit.edu	37	chr5	64466387	64466387	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtgctcttcagaccctgGgaacagtaaaggtgggtcat	12	9	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64466387	A	A	64466387	1	1	73	0	1	0	0	0	0	0	0	0	270	1247	43	4		4	ADAMTS6	5	64466387	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	25204979	64466387	116448873	124	80168											
SCAMP1	9522	broad.mit.edu	37	chr5	77756645	77756650	+	Intron	DEL	TTTCTT	-	-													ttcctcccttccttccttccTttcttgtctttcctctatct					rs143615009		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77756650	-	-	77756645	6	5	73	0	1	1	0	1	0	0	0	0	13982	1624	56	0		0	SCAMP1	5	77756645	Intron	DEL	TTTCTT	TCGA-17-Z044-01A-01W-0746-08	13290258	77756645	103158615	125	80169											
RASGRF2	5924	broad.mit.edu	37	chr5	80390621	80390621	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataatgtgaaggcagctatCactctttgtttttttgtatt	7	5	2	1	rs78331706	byFrequency;by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80390621	A	A	80390621	1	1	73	0	1	0	0	0	0	0	0	0	13181	841	29	3		3	RASGRF2	5	80390621	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2633976	80390621	100524639	126	80170											
GPR98	84059	broad.mit.edu	37	chr5	89923211	89923211	+	Frame_Shift_Del	DEL	G	-	-													tcataattccagtagttcgtGgaaaggacaacaatggaaat							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89923211	-	-	89923211	7	5	73	1	0	1	0	1	0	0	0	0	6787	1349	47	0	882	0	GPR98	5	89923211	Frame_Shift_Del	DEL	G	TCGA-17-Z044-01A-01W-0746-08	9532590	89923211	90992049	127	80171											
MEGF10	84466	broad.mit.edu	37	chr5	126705823	126705823	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagtgtaaatgccacgaccAactcagtcatacagtttctt	6	10	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126705823	T	T	126705823	1	4	73	0	1	0	0	0	0	0	0	0	9553	145	5	5		5	MEGF10	5	126705823	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	36782612	126705823	54209437	128	80172											
IK	3550	broad.mit.edu	37	chr5	140037231	140037231	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacccgtaacaagaagctTaagaagaaggataaaggtac	11	6	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140037231	G	G	140037231	2	3	73	1	0	0	0	0	0	0	0	1	7678	1741	61	5		5	IK	5	140037231	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08	13331408	140037231	40878029	129	80173											
PCDHB7	56129	broad.mit.edu	37	chr5	140553994	140553994	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacgaggccctgcaggcGttcgagttccgcgtgggcgc	16	13	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140553994	T	T	140553994	2	4	73	1	0	0	0	0	0	0	0	1	11641	1132	40	3		3	PCDHB7	5	140553994	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	516763	140553994	40361266	130	80174											
PCDHB8	56128	broad.mit.edu	37	chr5	140557439	140557439	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattaaccggcaaaaagcagCagaacctggaagtccacggg	11	11	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140557439	T	T	140557439	1	4	73	0	1	0	0	0	0	0	0	0	11642	725	25	4		4	PCDHB8	5	140557439	5'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3445	140557439	40357821	131	80175											
PCDHB11	56125	broad.mit.edu	37	chr5	140580679	140580679	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgtgttggtctctgacgtCaatgacaacgcccccacctt	8	14	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140580679	A	A	140580679	2	1	73	1	0	0	0	0	0	0	0	1	11630	813	29	3		3	PCDHB11	5	140580679	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	23240	140580679	40334581	132	80176											
DPYSL3	1809	broad.mit.edu	37	chr5	146792280	146792280	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgagtctttgtcactcTtgcaagcacttttagcagcc	8	10	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146792280	C	C	146792280	1	2	73	0	1	0	0	0	0	0	0	0	4788	1624	56	5		5	DPYSL3	5	146792280	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	6211601	146792280	34122980	133	80177											
SH3TC2	79628	broad.mit.edu	37	chr5	148386236	148386236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctactcctcagcgaagatGggagcacctttgagatcttc	10	11	3	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148386236	T	T	148386236	1	4	73	0	1	0	0	0	0	0	0	0	14375	1363	47	2		2	SH3TC2	5	148386236	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1593956	148386236	32529024	134	80178											
TNIP1	10318	broad.mit.edu	37	chr5	150439923	150439923	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctggtgaattctgctcctCaggagtgaccacttcaaatt	8	11	4	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150439923	T	T	150439923	3	4	73	1	0	0	0	0	1	0	0	0	16437	835	29	4	1575	4	TNIP1	5	150439923	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2053687	150439923	30475337	135	80179											
G3BP1	10146	broad.mit.edu	37	chr5	151179577	151179577	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaagtaagagctcagaagGgcgatttctcgtttggggga	14	7	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151179577	A	A	151179577	1	1	73	0	1	0	0	0	0	0	0	0	6201	1247	43	4		4	G3BP1	5	151179577	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	739654	151179577	29735683	136	80180											
SGCD	6444	broad.mit.edu	37	chr5	155714676	155714676	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgtatgTgtgtatgggtacatgcacac	15	4	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155714676	C	C	155714676	1	2	73	0	1	0	0	0	0	0	0	0	14314	1711	59	5		5	SGCD	5	155714676	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4535099	155714676	25200584	137	80181											
LRRC16A	55604	broad.mit.edu	37	chr6	25488901	25488901	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtctttgtagtgcatttTcctgcctctctctttgtcat	6	11	4	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25488901	C	C	25488901	1	2	73	0	1	0	0	0	0	0	0	0	9058	1798	62	5		5	LRRC16A	6	25488901	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08		25488901	145626166	138	80182											
SLC17A1	6568	broad.mit.edu	37	chr6	25820094	25820094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatgacaccataggaggtgGaactcaagatgattccctgg	12	8	1	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25820094	T	T	25820094	3	4	73	1	0	0	0	0	1	0	0	0	14529	1174	41	3	1182	3	SLC17A1	6	25820094	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	331193	25820094	145294973	139	80183											
OR2B2	81697	broad.mit.edu	37	chr6	27879546	27879546	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacacaggacaacttgagCagagcagggacttcacagaa	10	10	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27879546	T	T	27879546	2	4	73	1	0	0	0	0	0	0	0	1	11083	697	25	4		4	OR2B2	6	27879546	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2059452	27879546	143235521	140	80184											
C6orf10	10665	broad.mit.edu	37	chr6	32290059	32290059	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtcactgttggtatgtGttaccttggaagctgagttt	12	5	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32290059	A	A	32290059	1	1	73	0	1	0	0	0	0	0	0	0	2340	1392	48	4		4	C6orf10	6	32290059	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4410513	32290059	138825008	141	80185											
SLC39A7	7922	broad.mit.edu	37	chr6	33170521	33170521	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttgggcaagggacatcatCacaaatcacatggaatatgt	9	7	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33170521	A	A	33170521	1	1	73	0	1	0	0	0	0	0	0	0	14737	841	29	3		3	SLC39A7	6	33170521	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	880462	33170521	137944546	142	80186											
C6orf106	64771	broad.mit.edu	37	chr6	34664402	34664402	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggggaccggacacccgctTccccgcctcttcacaaccaa	9	19	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34664402	C	C	34664402	1	2	73	0	1	0	0	0	0	0	0	0	2342	1798	62	5		5	C6orf106	6	34664402	5'UTR	SNP	T	TCGA-17-Z044-01A-01W-0746-08	1493881	34664402	136450665	143	80187											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34790919	34790919	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttattgtctgcccacaatGggtatagcacttgactaggc	9	9	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34790919	A	A	34790919	1	1	73	0	1	0	0	0	0	0	0	0	17094	1363	47	4		4	UHRF1BP1	6	34790919	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	126517	34790919	136324148	144	80188											
DNAH8	1769	broad.mit.edu	37	chr6	38709724	38709724	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaactagaaaattatccTattgaactacttcttagtat	4	7	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38709724	C	C	38709724	1	2	73	0	1	0	0	0	0	0	0	0	4647	1537	53	5		5	DNAH8	6	38709724	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	3918805	38709724	132405343	145	80189											
DAAM2	23500	broad.mit.edu	37	chr6	39841183	39841183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcctgaaccttgacttgGggcaggtttagacaagactt	12	9	0	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39841183	T	T	39841183	1	4	73	0	1	0	0	0	0	0	0	0	4249	1247	43	2		2	DAAM2	6	39841183	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1131459	39841183	131273884	146	80190											
LRFN2	57497	broad.mit.edu	37	chr6	40486666	40486666	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggttccaggcagaggaaaTggaagtggagagtctggggg	21	4	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40486666	C	C	40486666	1	2	73	0	1	0	0	0	0	0	0	0	9025	1479	51	5		5	LRFN2	6	40486666	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	645483	40486666	130628401	147	80191											
RHAG	6005	broad.mit.edu	37	chr6	49573652	49573652	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattattcaagcttggaaaGaactgggaataaaaattgtt	8	3	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49573652	T	T	49573652	1	4	73	0	1	0	0	0	0	0	0	0	13424	957	33	3		3	RHAG	6	49573652	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	9086986	49573652	121541415	148	80192											
LRRC1	55227	broad.mit.edu	37	chr6	53787668	53787668	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcttcccgggagcctcaCgtgctccttgtcctaaccag	9	16	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53787668	T	T	53787668	1	4	73	0	1	0	0	0	0	0	0	0	9053	551	19	4		4	LRRC1	6	53787668	3'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4214016	53787668	117327399	149	80193											
PRIM2	5558	broad.mit.edu	37	chr6	57265090	57265091	+	Intron	INS	-	T	T													aagatctcttgtaaggcaggINSctggtggtaattaacttcct					rs145763494	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57265091	T	T	57265090	6	5	73	0	1	1	1	0	0	0	0	0	12597	1218	42	0		0	PRIM2	6	57265090	Intron	INS	-	TCGA-17-Z044-01A-01W-0746-08	3477422	57265090	113849977	150	80194											
OOEP	441161	broad.mit.edu	37	chr6	74079533	74079533	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catactgggaccagcagccgCggagcgcgctcgaggcggct	16	14	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74079533	A	A	74079533	1	1	73	0	1	0	0	0	0	0	0	0	10964	783	27	3		3	OOEP	6	74079533	5'Flank	SNP	C	TCGA-17-Z044-01A-01W-0746-08	16814443	74079533	97035534	151	80195											
MRAP2	112609	broad.mit.edu	37	chr6	84764910	84764910	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacctctcctggcctaggaGgtaagacctcctcaaggggt	12	12	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84764910	A	A	84764910	1	1	73	0	1	0	0	0	0	0	0	0	9848	1015	35	4		4	MRAP2	6	84764910	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	10685377	84764910	86350157	152	80196											
ORC3L	23595	broad.mit.edu	37	chr6	88346237	88346237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttgtttttctatttttGtctgctataagcctgccagt	6	8	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88346237	T	T	88346237	1	4	73	0	1	0	0	0	0	0	0	0	11357	1392	48	3		3	ORC3L	6	88346237	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	3581327	88346237	82768830	153	80197											
SIM1	6492	broad.mit.edu	37	chr6	100883870	100883871	+	Intron	INS	-	CA	CA													aactcccttaccatacacatINScacacacacacacacagaca					rs145637738	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	100883871	CA	CA	100883870	6	5	73	0	1	1	1	0	0	0	0	0	14436	1450	50	0		0	SIM1	6	100883870	Intron	INS	-	TCGA-17-Z044-01A-01W-0746-08	12537633	100883870	70231197	154	80198											
ZUFSP	221302	broad.mit.edu	37	chr6	116964537	116964537	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaccaaaaaagagcccgcatCgccaagtcaatcctaagcca	6	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116964537	T	T	116964537	1	4	73	0	1	0	0	0	0	0	0	0	18375	899	31	4		4	ZUFSP	6	116964537	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	16080667	116964537	54150530	155	80199											
FAM162B	221303	broad.mit.edu	37	chr6	117083327	117083327	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgatagataatttgccatgTaaacattccaaaaaattccc	4	8	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117083327	A	A	117083327	1	1	73	0	1	0	0	0	0	0	0	0	5521	1653	57	5		5	FAM162B	6	117083327	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	118790	117083327	54031740	156	80200											
SLC35F1	222553	broad.mit.edu	37	chr6	118426084	118426085	+	Intron	DNP	CC	AA	AA													tacacatgagccttcttgttCcttctcttctggactccttc							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	118426085	AA	AA	118426084	1	1	73	0	1	0	0	0	0	0	0	0	14702	870	30	3		3	SLC35F1	6	118426084	Intron	DNP	CC	TCGA-17-Z044-01A-01W-0746-08	1342757	118426084	52688983	157	80201											
PKIB	5570	broad.mit.edu	37	chr6	123022604	123022604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaagcttcagagatcaCctgccaaacacaggctgaac	10	12	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123022604	A	A	123022604	1	1	73	0	1	0	0	0	0	0	0	0	12069	522	18	3		3	PKIB	6	123022604	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4596520	123022604	48092463	158	80202											
SLC2A12	154091	broad.mit.edu	37	chr6	134373718	134373718	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cataatagcatgctaaagaaGagtgtggggaaaaacttcgg	12	5	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134373718	C	C	134373718	1	2	73	0	1	0	0	0	0	0	0	0	14655	957	33	4		4	SLC2A12	6	134373718	5'UTR	SNP	G	TCGA-17-Z044-01A-01W-0746-08	11351114	134373718	36741349	159	80203											
GPR126	57211	broad.mit.edu	37	chr6	142689014	142689014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaagtgactttagcatcCagaagaaaggtttcaatgcc	8	8	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142689014	A	A	142689014	3	1	73	1	0	0	0	0	1	0	0	0	6705	595	21	2	422	2	GPR126	6	142689014	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	8315296	142689014	28426053	160	80204											
UTRN	7402	broad.mit.edu	37	chr6	145110312	145110312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatgcatctaacacattaAcattcttataattttagggg	5	6	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145110312	G	G	145110312	1	3	73	0	1	0	0	0	0	0	0	0	17230	58	2	5		5	UTRN	6	145110312	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	2421298	145110312	26004755	161	80205											
OPRM1	4988	broad.mit.edu	37	chr6	154412190	154412190	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcattatgccagtgctcatCattaccgtgtgctatggact	8	10	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154412190	T	T	154412190	2	4	73	1	0	0	0	0	0	0	0	1	10981	816	29	4		4	OPRM1	6	154412190	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	9301878	154412190	16702877	162	80206											
NOX3	50508	broad.mit.edu	37	chr6	155726453	155726453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagacccaaggggcatgaTtattaaggcagatatgagtg	13	5	0	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155726453	C	C	155726453	1	2	73	0	1	0	0	0	0	0	0	0	10652	1508	52	5		5	NOX3	6	155726453	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	1314263	155726453	15388614	163	80207											
SERAC1	84947	broad.mit.edu	37	chr6	158549153	158549153	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttacctgagcgaactatAgaagaatgaagatgttcatt	9	6	1	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158549153	G	G	158549153	2	3	73	1	0	0	0	0	0	0	0	1	14187	407	15	5		5	SERAC1	6	158549153	Silent	SNP	A	TCGA-17-Z044-01A-01W-0746-08	2822700	158549153	12565914	164	80208											
UNC93A	54346	broad.mit.edu	37	chr6	167719510	167719510	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggaaaggtctcgcagtaCacgggcagggctgtgctgta	15	8	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167719510	A	A	167719510	4	1	73	1	0	0	0	0	0	1	0	0	17122	489	17	3	970	3	UNC93A	6	167719510	Nonsense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	9170357	167719510	3395557	165	80209											
HDAC9	9734	broad.mit.edu	37	chr7	18624803	18624803	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attggcataaaatttgttgtAcagggtcttatactttttat	7	4	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18624803	G	G	18624803	1	3	73	0	1	0	0	0	0	0	0	0	7081	406	14	5		5	HDAC9	7	18624803	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08		18624803	140513860	166	80210											
ABCB5	340273	broad.mit.edu	37	chr7	20685855	20685855	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagataaatattcaaagaTggatgtttttattaaacaaa	6	2	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20685855	C	C	20685855	1	2	73	0	1	0	0	0	0	0	0	0	44	1479	51	5		5	ABCB5	7	20685855	5'Flank	SNP	T	TCGA-17-Z044-01A-01W-0746-08	2061052	20685855	138452808	167	80211											
DNAH11	8701	broad.mit.edu	37	chr7	21934331	21934331	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaattcaaatagaagcccaTatgttcttgtttgcttccaa	5	8	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21934331	A	A	21934331	3	1	73	1	0	0	0	0	1	0	0	0	4639	1406	49	5	13173	5	DNAH11	7	21934331	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	1248476	21934331	137204332	168	80212											
BMPER	168667	broad.mit.edu	37	chr7	33976829	33976829	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtggggctcgggaaacctCtgtggtgtgttaggatttgg	18	5	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33976829	G	G	33976829	1	3	73	0	1	0	0	0	0	0	0	0	1474	928	32	4		4	BMPER	7	33976829	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	12042498	33976829	125161834	169	80213											
EEPD1	80820	broad.mit.edu	37	chr7	36327259	36327259	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcctaggtgggaagtcaCgacctgacccttgttaacct	11	12	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36327259	G	G	36327259	3	3	73	1	0	0	0	0	1	0	0	0	4972	535	19	4	1206	4	EEPD1	7	36327259	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2350430	36327259	122811404	170	80214											
KIAA0895	23366	broad.mit.edu	37	chr7	36373501	36373501	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccatcccctcttggcccGtacacaataatcccatcttg	5	16	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36373501	A	A	36373501	3	1	73	1	0	0	0	0	1	0	0	0	8267	1144	40	4	304	4	KIAA0895	7	36373501	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	46242	36373501	122765162	171	80215											
GLI3	2737	broad.mit.edu	37	chr7	42004993	42004993	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggagcatcaagtgctcTgggccaccgtaggggttgct	15	9	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42004993	A	A	42004993	2	1	73	1	0	0	0	0	0	0	0	1	6503	1567	55	5		5	GLI3	7	42004993	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08	5631492	42004993	117133670	172	80216											
OGDH	4967	broad.mit.edu	37	chr7	44713942	44713942	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgagcctccatgcctggCcagaatcccctctttttggt	10	13	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44713942	A	A	44713942	1	1	73	0	1	0	0	0	0	0	0	0	10934	754	26	3		3	OGDH	7	44713942	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2708949	44713942	114424721	173	80217											
ABCA13	154664	broad.mit.edu	37	chr7	48337903	48337903	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaatatcaaattttgttttCgcagtcagtaatgatctaaa	6	5	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48337903	T	T	48337903	1	4	73	0	1	0	0	0	0	0	0	0	31	899	31	4		4	ABCA13	7	48337903	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3623961	48337903	110800760	174	80218											
TYW1B	441250	broad.mit.edu	37	chr7	72093993	72093993	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgttgttgctaaaacaaaGgaaaagccaacttcgttgtt	8	7	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72093993	A	A	72093993	1	1	73	0	1	0	0	0	0	0	0	0	16945	1015	35	4		4	TYW1B	7	72093993	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	23756090	72093993	87044670	175	80219											
PEX1	5189	broad.mit.edu	37	chr7	92131252	92131252	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtcgagaatgtatggctcGatccacaagtactgtaaaat	10	7	0	1	rs61750417		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92131252	A	A	92131252	4	1	73	1	0	0	0	0	0	1	0	0	11830	1066	37	4	1527	4	PEX1	7	92131252	Nonsense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	20037259	92131252	67007411	176	80220											
AZGP1	563	broad.mit.edu	37	chr7	99569388	99569388	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgttactgtcgttgtaataCtccacgatgtctttcagggt	9	10	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99569388	A	A	99569388	3	1	73	1	0	0	0	0	1	0	0	0	1244	564	20	3	590	3	AZGP1	7	99569388	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7438136	99569388	59569275	177	80221											
ZAN	7455	broad.mit.edu	37	chr7	100363097	100363097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggaggcctgtgaatgcaatCcgggcttcgtcctcagtggc	14	11	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100363097	A	A	100363097	3	1	73	1	0	0	0	0	1	0	0	0	17640	855	30	3	4476	3	ZAN	7	100363097	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	793709	100363097	58775566	178	80222											
LHFPL3	375612	broad.mit.edu	37	chr7	104100480	104100480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccaccctcaagtaggccCcaatgtctgttgttcccctc	6	18	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104100480	T	T	104100480	1	4	73	0	1	0	0	0	0	0	0	0	8838	638	22	4		4	LHFPL3	7	104100480	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3737383	104100480	55038183	179	80223											
SLC26A4	5172	broad.mit.edu	37	chr7	107315392	107315392	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttttccttatcgtagttGatatttggtggcttgcagat	9	7	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107315392	T	T	107315392	3	4	73	1	0	0	0	0	1	0	0	0	14633	1281	45	3	621	3	SLC26A4	7	107315392	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	3214912	107315392	51823271	180	80224											
DLD	1738	broad.mit.edu	37	chr7	107545717	107545717	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcattttgttttagatAaattatttacagagtaattt	7	2	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107545717	C	C	107545717	1	2	73	0	1	0	0	0	0	0	0	0	4591	377	13	5		5	DLD	7	107545717	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	230325	107545717	51592946	181	80225											
SLC13A1	6561	broad.mit.edu	37	chr7	122822406	122822406	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgttttccatcatacttgTaagaacctaggttgcagaga	8	7	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122822406	A	A	122822406	1	1	73	0	1	0	0	0	0	0	0	0	14504	1653	57	5		5	SLC13A1	7	122822406	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	15276689	122822406	36316257	182	80226											
CHCHD3	54927	broad.mit.edu	37	chr7	132646153	132646153	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaggggtttcatccactaTgatacaaaaatttgggtcac	8	8	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132646153	C	C	132646153	1	2	73	0	1	0	0	0	0	0	0	0	3348	1479	51	5		5	CHCHD3	7	132646153	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	9823747	132646153	26492510	183	80227											
AKR1B10	57016	broad.mit.edu	37	chr7	134225855	134225855	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattgaggttgaatctcctGgtgagattatacaggagatt	11	4	1	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134225855	A	A	134225855	1	1	73	0	1	0	0	0	0	0	0	0	467	1363	47	4		4	AKR1B10	7	134225855	3'UTR	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1579702	134225855	24912808	184	80228											
DGKI	9162	broad.mit.edu	37	chr7	137470406	137470406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaataccaaaaccagggaaGgacattaaaaaaacagaaaa	6	7	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137470406	T	T	137470406	1	4	73	0	1	0	0	0	0	0	0	0	4511	1015	35	2		2	DGKI	7	137470406	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	3244551	137470406	21668257	185	80229											
UBN2	254048	broad.mit.edu	37	chr7	138982695	138982695	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtcgatgtttacattctctCgtcccaagcactgtggtgag	10	10	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138982695	G	G	138982695	1	3	73	0	1	0	0	0	0	0	0	0	17019	899	31	4		4	UBN2	7	138982695	3'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1512289	138982695	20155968	186	80230											
WEE2	494551	broad.mit.edu	37	chr7	141408496	141408496	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcctccctgcttctgTaggttcacagcgttcccttc	6	15	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141408496	A	A	141408496	1	1	73	0	1	0	0	0	0	0	0	0	17472	1653	57	5		5	WEE2	7	141408496	5'UTR	SNP	T	TCGA-17-Z044-01A-01W-0746-08	2425801	141408496	17730167	187	80231											
WEE2	494551	broad.mit.edu	37	chr7	141414021	141414021	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattcagaccatgctgagcCggttggtgatttctccaaca	9	11	3	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141414021	T	T	141414021	3	4	73	1	0	0	0	0	1	0	0	0	17472	643	23	4	361	4	WEE2	7	141414021	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	5525	141414021	17724642	188	80232											
TAS2R38	5726	broad.mit.edu	37	chr7	141673134	141673134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagagaaacggatgagcttgGagcagtaaagcaggctgagg	17	5	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141673134	T	T	141673134	3	4	73	1	0	0	0	0	1	0	0	0	15694	1174	41	3	649	3	TAS2R38	7	141673134	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	259113	141673134	17465529	189	80233											
MGAM	8972	broad.mit.edu	37	chr7	141782480	141782480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcaaaatcttcattttaCgggcactgctgtttattttt	6	7	3	0	rs143574397	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141782480	A	A	141782480	1	1	73	0	1	0	0	0	0	0	0	0	9634	551	19	3		3	MGAM	7	141782480	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	109346	141782480	17356183	190	80234											
KEL	3792	broad.mit.edu	37	chr7	142639418	142639418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgcagaagagggtttgGggtatttgacggagtgtctg	16	5	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142639418	T	T	142639418	1	4	73	0	1	0	0	0	0	0	0	0	8212	1247	43	2		2	KEL	7	142639418	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	856938	142639418	16499245	191	80235											
GSTK1	373156	broad.mit.edu	37	chr7	142962234	142962234	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggaccttggatgactttCtgaccttccccaggcacgtt	11	12	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142962234	A	A	142962234	1	1	73	0	1	0	0	0	0	0	0	0	6902	912	32	3		3	GSTK1	7	142962234	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	322816	142962234	16176429	192	80236											
PRKAG2	51422	broad.mit.edu	37	chr7	151261135	151261135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttgttgcagtggacgtcgGgggagcaggactgggaaagc	18	7	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151261135	C	C	151261135	1	2	73	0	1	0	0	0	0	0	0	0	12607	1247	43	4		4	PRKAG2	7	151261135	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	8298901	151261135	7877528	193	80237											
MLL3	58508	broad.mit.edu	37	chr7	151945107	151945107	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtttccagcagaggaactAagagctgaagggtaattatg	12	5	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151945107	T	T	151945107	2	4	73	1	0	0	0	0	0	0	0	1	9715	349	13	5		5	MLL3	7	151945107	Silent	SNP	A	TCGA-17-Z044-01A-01W-0746-08	683972	151945107	7193556	194	80238											
DPP6	1804	broad.mit.edu	37	chr7	153794387	153794387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatcccatgaaagaagaGgctgagtctgacaacagcag	11	11	1	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153794387	T	T	153794387	1	4	73	0	1	0	0	0	0	0	0	0	4770	1015	35	2		2	DPP6	7	153794387	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1849280	153794387	5344276	195	80239											
RBM33	155435	broad.mit.edu	37	chr7	155477837	155477837	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttagcattagcgaaagtcGatacgtatctttgaactgtg	9	6	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155477837	A	A	155477837	1	1	73	0	1	0	0	0	0	0	0	0	13238	1073	37	4		4	RBM33	7	155477837	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1683450	155477837	3660826	196	80240											
PTPRN2	5799	broad.mit.edu	37	chr7	157691365	157691365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccccttctgttactcacCgacccgactccggtttgaag	8	16	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157691365	A	A	157691365	2	1	73	1	0	0	0	0	0	0	0	1	12916	666	23	1		1	PTPRN2	7	157691365	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2213528	157691365	1447298	197	80241											
ARHGEF10	9639	broad.mit.edu	37	chr8	1844525	1844525	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtccatggtgctggatgcAtacagtgaatatgtgaacaa	11	6	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1844525	G	G	1844525	2	3	73	1	0	0	0	0	0	0	0	1	896	204	8	5		5	ARHGEF10	8	1844525	Silent	SNP	A	TCGA-17-Z044-01A-01W-0746-08		1844525	144519497	198	80242											
CSMD1	64478	broad.mit.edu	37	chr8	2944597	2944597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacacaggaaacaaggctgGggatgaaaacgcatttctta	10	7	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2944597	T	T	2944597	1	4	73	0	1	0	0	0	0	0	0	0	3978	1247	43	2		2	CSMD1	8	2944597	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1100072	2944597	143419425	199	80243											
CSMD1	64478	broad.mit.edu	37	chr8	3174522	3174522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgaggcaagagtgtgtgCgtggatgaagcatgcacaaa	16	5	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3174522	A	A	3174522	1	1	73	0	1	0	0	0	0	0	0	0	3978	783	27	3		3	CSMD1	8	3174522	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	229925	3174522	143189500	200	80244											
SLC18A1	6570	broad.mit.edu	37	chr8	20037237	20037237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactaaaagactgtgcctgcCcaagttatcctattagctaa	6	10	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20037237	A	A	20037237	1	1	73	0	1	0	0	0	0	0	0	0	14538	638	22	2		2	SLC18A1	8	20037237	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	16862715	20037237	126326785	201	80245											
TNFRSF10A	8797	broad.mit.edu	37	chr8	23076161	23076161	+	Intron	DEL	C	-	-													tttacatgacttctcaggtaCccccagcagtgacccagcgc					rs139383985		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23076161	-	-	23076161	6	5	73	0	1	1	0	1	0	0	0	0	16403	522	18	0		0	TNFRSF10A	8	23076161	Intron	DEL	C	TCGA-17-Z044-01A-01W-0746-08	3038924	23076161	123287861	202	80246											
ADAM7	8756	broad.mit.edu	37	chr8	24324565	24324565	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattttcttgatgatgtctaGggataaagtatgagtccagt	10	4	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24324565	A	A	24324565	1	1	73	0	1	0	0	0	0	0	0	0	251	1015	35	4		4	ADAM7	8	24324565	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1248404	24324565	122039457	203	80247											
UNC5D	137970	broad.mit.edu	37	chr8	35541059	35541059	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaaacattcctttcttcCtgtaggtggaatggctgaaa	9	7	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35541059	T	T	35541059	1	4	73	0	1	0	0	0	0	0	0	0	17121	696	24	4		4	UNC5D	8	35541059	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	11216494	35541059	110822963	204	80248											
GPR124	25960	broad.mit.edu	37	chr8	37672453	37672453	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacggggctccgcaatggCtccttcctgggactgtcact	11	14	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37672453	A	A	37672453	2	1	73	1	0	0	0	0	0	0	0	1	6703	784	28	3		3	GPR124	8	37672453	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2131394	37672453	108691569	205	80249											
SNTG1	54212	broad.mit.edu	37	chr8	51617005	51617006	+	Intron	DNP	CC	AA	AA													atgtgttggggctttgaagcCcggagttctggtataatgtc							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	51617006	AA	AA	51617005	1	1	73	0	1	0	0	0	0	0	0	0	14988	638	22	2		2	SNTG1	8	51617005	Intron	DNP	CC	TCGA-17-Z044-01A-01W-0746-08	13944552	51617005	94747017	206	80250											
XKR4	114786	broad.mit.edu	37	chr8	56378673	56378673	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctagaactagaaataccatTtgacccagccatctcattac	4	12	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56378673	A	A	56378673	1	1	73	0	1	0	0	0	0	0	0	0	17560	1856	64	5		5	XKR4	8	56378673	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4761668	56378673	89985349	207	80251											
CHD7	55636	broad.mit.edu	37	chr8	61750240	61750240	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccaggctcaggctagatGtcatagaataggacagagca	11	9	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61750240	A	A	61750240	3	1	73	1	0	0	0	0	1	0	0	0	3361	1377	48	4	4265	4	CHD7	8	61750240	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5371567	61750240	84613782	208	80252											
CLVS1	157807	broad.mit.edu	37	chr8	62286797	62286797	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catacccttgcttcttgaaaCattctcttcttcttcttttt	2	12	5	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62286797	T	T	62286797	1	4	73	0	1	0	0	0	0	0	0	0	3603	493	17	4		4	CLVS1	8	62286797	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	536557	62286797	84077225	209	80253											
C8orf34	116328	broad.mit.edu	37	chr8	69502858	69502858	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattaaacttttaaaaatgAaatcgttgaagttcttaaaa	4	4	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69502858	G	G	69502858	1	3	73	0	1	0	0	0	0	0	0	0	2448	261	9	5		5	C8orf34	8	69502858	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	7216061	69502858	76861164	210	80254											
EYA1	2138	broad.mit.edu	37	chr8	72127797	72127797	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataaatctccaaaatgaAcaagcacgagcattgcccat	5	10	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72127797	G	G	72127797	1	3	73	0	1	0	0	0	0	0	0	0	5371	58	2	5		5	EYA1	8	72127797	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	2624939	72127797	74236225	211	80255											
EYA1	2138	broad.mit.edu	37	chr8	72218499	72218500	+	Intron	INS	-	T	T													gaagatcagagaatagaaagINSttttgggaagttgggtgagg					rs138602964	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72218500	T	T	72218499	6	5	73	0	1	1	1	0	0	0	0	0	5371	1044	36	0		0	EYA1	8	72218499	Intron	INS	-	TCGA-17-Z044-01A-01W-0746-08	90702	72218499	74145523	212	80256											
ZNF704	619279	broad.mit.edu	37	chr8	81582794	81582794	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgcagtgctcagcaccttCccacagtttttccagaggca	9	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81582794	G	G	81582794	2	3	73	1	0	0	0	0	0	0	0	1	18234	842	30	4		4	ZNF704	8	81582794	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	9364295	81582794	64781228	213	80257											
RUNX1T1	862	broad.mit.edu	37	chr8	92982958	92982958	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgtttggcctcggcgacCgtgcgctccatcttggccct	12	16	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92982958	A	A	92982958	2	1	73	1	0	0	0	0	0	0	0	1	13858	639	23	1		1	RUNX1T1	8	92982958	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	11400164	92982958	53381064	214	80258											
NIPAL2	79815	broad.mit.edu	37	chr8	99274506	99274506	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatcaaattcacacataacaGtattaactttaaatgtaaat	3	6	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99274506	C	C	99274506	1	2	73	0	1	0	0	0	0	0	0	0	10520	1044	36	4		4	NIPAL2	8	99274506	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	6291548	99274506	47089516	215	80259											
KCNV1	27012	broad.mit.edu	37	chr8	110980784	110980784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataggagcagtaggccgaCttcttcgtaacactgggtga	12	8	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110980784	A	A	110980784	3	1	73	1	0	0	0	0	1	0	0	0	8164	565	20	3	470	3	KCNV1	8	110980784	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	11706278	110980784	35383238	216	80260											
EXT1	2131	broad.mit.edu	37	chr8	118986196	118986196	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggaaggaaggaaGgaaggaaggaaggaaggaag	21	0	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118986196	A	A	118986196	1	1	73	0	1	0	0	0	0	0	0	0	5366	1015	35	4		4	EXT1	8	118986196	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	8005412	118986196	27377826	217	80261											
COL14A1	7373	broad.mit.edu	37	chr8	121219295	121219295	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgtggaaaaatacagaGttgtgtattatcctaccagg	10	5	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121219295	C	C	121219295	3	2	73	1	0	0	0	0	1	0	0	0	3703	1029	36	4	1187	4	COL14A1	8	121219295	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2233099	121219295	25144727	218	80262											
KIAA0020	9933	broad.mit.edu	37	chr9	2812306	2812306	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggggcttagtaagtacaaTaggaccttccttccatattt	8	9	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2812306	C	C	2812306	2	2	73	1	0	0	0	0	0	0	0	1	8222	1393	49	5		5	KIAA0020	9	2812306	Silent	SNP	T	TCGA-17-Z044-01A-01W-0746-08		2812306	138401125	219	80263											
PTPRD	5789	broad.mit.edu	37	chr9	8319997	8319997	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaggcgatgttactggGtgagatgttcacagtcttgg	13	6	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8319997	C	C	8319997	1	2	73	0	1	0	0	0	0	0	0	0	12907	1276	44	4		4	PTPRD	9	8319997	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5507691	8319997	132893434	220	80264											
C9orf93	203238	broad.mit.edu	37	chr9	15623251	15623251	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aactttattgatgcaaaaatGaattattttccaggagcaag	7	5	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15623251	C	C	15623251	1	2	73	0	1	0	0	0	0	0	0	0	2532	1305	45	4		4	C9orf93	9	15623251	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	7303254	15623251	125590180	221	80265											
KIAA1797	54914	broad.mit.edu	37	chr9	20720242	20720242	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcattttattctaggaacaGagtgacaacagcatcatctt	6	8	4	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20720242	T	T	20720242	1	4	73	0	1	0	0	0	0	0	0	0	8328	957	33	3		3	KIAA1797	9	20720242	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5096991	20720242	120493189	222	80266											
FAM108B1	51104	broad.mit.edu	37	chr9	74481843	74481843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttcaaacaatgcgaggcCatgtgaaaagtcaatgactt	9	8	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74481843	A	A	74481843	3	1	73	1	0	0	0	0	1	0	0	0	5438	594	21	2	174	2	FAM108B1	9	74481843	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	53761601	74481843	66731588	223	80267											
DAPK1	1612	broad.mit.edu	37	chr9	90313576	90313576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctctgcccccagccttcGgtggcaagctgaagaaccca	9	17	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90313576	T	T	90313576	3	4	73	1	0	0	0	0	1	0	0	0	4268	1116	39	1	2703	1	DAPK1	9	90313576	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	15831733	90313576	50899855	224	80268											
KIAA1529	57653	broad.mit.edu	37	chr9	100103012	100103012	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagacgcctgttgccaggcGgaccatggtctagtggtagc	15	10	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100103012	A	A	100103012	1	1	73	0	1	0	0	0	0	0	0	0	8310	1131	39	4		4	KIAA1529	9	100103012	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	9789436	100103012	41110419	225	80269											
GRIN3A	116443	broad.mit.edu	37	chr9	104433432	104433433	+	Intron	DNP	GG	TT	TT													aaaagtaagaaaagcagtgaGgcctaagataggaagcagtg							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	104433433	TT	TT	104433432	1	4	73	0	1	0	0	0	0	0	0	0	6849	1015	35	2		2	GRIN3A	9	104433432	Intron	DNP	GG	TCGA-17-Z044-01A-01W-0746-08	4330420	104433432	36779999	226	80270											
NUP188	23511	broad.mit.edu	37	chr9	131743680	131743680	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatccccttggtgagataaaGagatcccccttttatgacag	8	10	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131743680	T	T	131743680	1	4	73	0	1	0	0	0	0	0	0	0	10853	957	33	3		3	NUP188	9	131743680	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	27310248	131743680	9469751	227	80271											
RAPGEF1	2889	broad.mit.edu	37	chr9	134501637	134501637	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccctggggccagaggtccGtctggctggggatggccgcc	18	13	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134501637	A	A	134501637	2	1	73	1	0	0	0	0	0	0	0	1	13151	1136	40	4		4	RAPGEF1	9	134501637	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2757957	134501637	6711794	228	80272											
UCN3	114131	broad.mit.edu	37	chr10	5412326	5412326	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtatatgtgtgtgtatAtgcgtgtgtatatgcgtgta	14	2	0	0	rs147753415	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5412326	G	G	5412326	1	3	73	0	1	0	0	0	0	0	0	0	17055	464	16	5		5	UCN3	10	5412326	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08		5412326	130122421	229	80273											
PRKCQ	5588	broad.mit.edu	37	chr10	6546365	6546365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctggtttcagcaggagCctgctggtctacctaggctg	12	11	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6546365	A	A	6546365	1	1	73	0	1	0	0	0	0	0	0	0	12621	754	26	3		3	PRKCQ	10	6546365	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1134039	6546365	128988382	230	80274											
NMT2	9397	broad.mit.edu	37	chr10	15151295	15151295	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgtctttctaaaagctgtCttaaggctcagctcacacct	6	12	6	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15151295	A	A	15151295	1	1	73	0	1	0	0	0	0	0	0	0	10599	928	32	3		3	NMT2	10	15151295	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	8604930	15151295	120383452	231	80275											
CACNB2	783	broad.mit.edu	37	chr10	18691050	18691050	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgtgggagtttccccTaaaggttgtttgatctatta	9	9	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18691050	A	A	18691050	1	1	73	0	1	0	0	0	0	0	0	0	2579	1537	53	5		5	CACNB2	10	18691050	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	3539755	18691050	116843697	232	80276											
MYO3A	53904	broad.mit.edu	37	chr10	26481991	26481991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggagtaggataagggttGgttatgcagcaaacgtattt	14	3	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26481991	T	T	26481991	1	4	73	0	1	0	0	0	0	0	0	0	10170	1363	47	2		2	MYO3A	10	26481991	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	7790941	26481991	109052756	233	80277											
CHAT	1103	broad.mit.edu	37	chr10	50827817	50827817	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagcagaccctggccaCgtacctgcagtgcatgcgac	12	15	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50827817	G	G	50827817	3	3	73	1	0	0	0	0	1	0	0	0	3344	536	19	4	488	4	CHAT	10	50827817	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	24345826	50827817	84706930	234	80278											
P4HA1	5033	broad.mit.edu	37	chr10	74834677	74834677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacaggatcacacacctaCaaaagaaagagagaaatgca	7	8	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74834677	A	A	74834677	1	1	73	0	1	0	0	0	0	0	0	0	11450	493	17	3		3	P4HA1	10	74834677	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	24006860	74834677	60700070	235	80279											
SH2D4B	387694	broad.mit.edu	37	chr10	82403855	82403855	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaataatttttttccttatCaattggattcattttggtat	5	4	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82403855	A	A	82403855	1	1	73	0	1	0	0	0	0	0	0	0	14349	841	29	3		3	SH2D4B	10	82403855	3'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7569178	82403855	53130892	236	80280											
NRG3	10718	broad.mit.edu	37	chr10	84498413	84498413	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttatcggatccaagtaggtCaagcatttttcttctctcta	6	10	4	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84498413	G	G	84498413	1	3	73	0	1	0	0	0	0	0	0	0	10744	841	29	4		4	NRG3	10	84498413	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2094558	84498413	51036334	237	80281											
LIPK	643414	broad.mit.edu	37	chr10	90512289	90512289	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagcttacacctcctttaTacaacattactaagatggaa	4	9	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90512289	C	C	90512289	3	2	73	1	0	0	0	0	1	0	0	0	8900	1406	49	5	1010	5	LIPK	10	90512289	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	6013876	90512289	45022458	238	80282											
CPEB3	22849	broad.mit.edu	37	chr10	93897339	93897339	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaagagttgaccctggAgggggtccaccaattctaca	13	9	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93897339	C	C	93897339	1	2	73	0	1	0	0	0	0	0	0	0	3834	319	11	5		5	CPEB3	10	93897339	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	3385050	93897339	41637408	239	80283											
CEP55	55165	broad.mit.edu	37	chr10	95277170	95277170	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacaataaataaggaaacTaaagaaaatgcaacagggtg	8	4	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95277170	C	C	95277170	1	2	73	0	1	0	0	0	0	0	0	0	3285	1537	53	5		5	CEP55	10	95277170	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	1379831	95277170	40257577	240	80284											
SORCS1	114815	broad.mit.edu	37	chr10	108439436	108439436	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtctttgctggcaatgatCcctgatgtgtagggattctc	12	8	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108439436	A	A	108439436	2	1	73	1	0	0	0	0	0	0	0	1	15044	842	30	3		3	SORCS1	10	108439436	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	13162266	108439436	27095311	241	80285											
TCF7L2	6934	broad.mit.edu	37	chr10	114925186	114925186	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgccactgtaattgtcctcgGaccactgggcgtgccacctc	10	16	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114925186	T	T	114925186	1	4	73	0	1	0	0	0	0	0	0	0	15820	1189	41	3		3	TCF7L2	10	114925186	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	6485750	114925186	20609561	242	80286											
SLC18A2	6571	broad.mit.edu	37	chr10	119013910	119013910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgactatttctttccctGtgtagggatgggcatgcttg	12	7	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119013910	T	T	119013910	1	4	73	0	1	0	0	0	0	0	0	0	14539	1392	48	3		3	SLC18A2	10	119013910	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4088724	119013910	16520837	243	80287											
OR52E8	390079	broad.mit.edu	37	chr11	5878565	5878565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagcggtcaaaggccatgGccaccaacacaatgctctcc	9	14	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5878565	T	T	5878565	3	4	73	1	0	0	0	0	1	0	0	0	11212	1203	42	3	587	3	OR52E8	11	5878565	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08		5878565	129127951	244	80288											
INSC	387755	broad.mit.edu	37	chr11	15212219	15212219	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtagaggtggtgagtaactActagctaacttttctctctc	10	8	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15212219	T	T	15212219	1	4	73	0	1	0	0	0	0	0	0	0	7834	406	14	5		5	INSC	11	15212219	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	9333654	15212219	119794297	245	80289											
LMO2	4005	broad.mit.edu	37	chr11	33910107	33910107	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctcttctccttcttccgGgaacattcttccccagatgt	6	14	4	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33910107	T	T	33910107	1	4	73	0	1	0	0	0	0	0	0	0	8926	1247	43	2		2	LMO2	11	33910107	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	18697888	33910107	101096409	246	80290											
PDHX	8050	broad.mit.edu	37	chr11	34978962	34978962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaaaatatacggctagGttcactaattggtttgatag	9	4	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34978962	T	T	34978962	3	4	73	1	0	0	0	0	1	0	0	0	11761	1261	44	3	507	3	PDHX	11	34978962	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1068855	34978962	100027554	247	80291											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45923771	45923771	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctgagatcagtggtggcAtgagtgagttgactggcccc	17	8	1	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45923771	T	T	45923771	1	4	73	0	1	0	0	0	0	0	0	0	9376	232	8	5		5	MAPK8IP1	11	45923771	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	10944809	45923771	89082745	248	80292											
OR5D18	219438	broad.mit.edu	37	chr11	55587141	55587141	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatacaagtgggaccacGttcaccctcttgggcttctc	9	12	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587141	T	T	55587141	2	4	73	1	0	0	0	0	0	0	0	1	11251	1132	40	3		3	OR5D18	11	55587141	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	9663370	55587141	79419375	249	80293											
OR5D18	219438	broad.mit.edu	37	chr11	55587801	55587801	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcctcaagatgcgttcagtCagtgggcgccgcaaagcctt	11	12	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587801	T	T	55587801	2	4	73	1	0	0	0	0	0	0	0	1	11251	813	29	4		4	OR5D18	11	55587801	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	660	55587801	79418715	250	80294											
OR5T2	219464	broad.mit.edu	37	chr11	55999704	55999704	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggattcagcaagggaatcaCaatggtgtaaaatattgaca	11	5	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55999704	G	G	55999704	3	3	73	1	0	0	0	0	1	0	0	0	11276	478	17	4	120	4	OR5T2	11	55999704	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	411903	55999704	79006812	251	80295											
OR5B12	390191	broad.mit.edu	37	chr11	58207392	58207392	+	Frame_Shift_Del	DEL	T	-	-													tgagaaaccccaccatcaccTtgggagtgacagctgaggaa							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58207392	-	-	58207392	7	5	73	1	0	1	0	1	0	0	0	0	11242	1609	56	0	715	0	OR5B12	11	58207392	Frame_Shift_Del	DEL	T	TCGA-17-Z044-01A-01W-0746-08	2207688	58207392	76799124	252	80296											
SLC22A6	9356	broad.mit.edu	37	chr11	62751994	62751994	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccccccgttcttgctgaGgttggcatcggcaggcgggc	15	14	1	1	rs67264610		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62751994	C	C	62751994	3	2	73	1	0	0	0	0	1	0	0	0	14572	1000	35	4	1562	4	SLC22A6	11	62751994	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4544602	62751994	72254522	253	80297											
LGALS12	85329	broad.mit.edu	37	chr11	63279188	63279188	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcctccccagtccccctgGaagtcaacttctcaatacct	6	17	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63279188	A	A	63279188	1	1	73	0	1	0	0	0	0	0	0	0	8811	1189	41	4		4	LGALS12	11	63279188	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	527194	63279188	71727328	254	80298											
MRGPRF	116535	broad.mit.edu	37	chr11	68773708	68773708	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggctgtagagttccggggCctcgctcaggccagggcaca	15	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68773708	T	T	68773708	3	4	73	1	0	0	0	0	1	0	0	0	9859	739	26	4	965	4	MRGPRF	11	68773708	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	5494520	68773708	66232808	255	80299											
RAB30	27314	broad.mit.edu	37	chr11	82751994	82751994	+	Intron	DEL	G	-	-													acctgtaatcccagtactttGggaggccaaagtgggcaaat							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82751994	-	-	82751994	6	5	73	0	1	1	0	1	0	0	0	0	13027	1363	47	0		0	RAB30	11	82751994	Intron	DEL	G	TCGA-17-Z044-01A-01W-0746-08	13978286	82751994	52254522	256	80300											
GUCY1A2	2977	broad.mit.edu	37	chr11	106810157	106810157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatccactcttctagttccCatcaccatctcaagtccata	2	15	4	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106810157	A	A	106810157	1	1	73	0	1	0	0	0	0	0	0	0	6958	609	21	2		2	GUCY1A2	11	106810157	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	24058163	106810157	28196359	257	80301											
SORL1	6653	broad.mit.edu	37	chr11	121435835	121435835	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgggacttctgctctagtCagctggttagtctgctatgg	12	9	5	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121435835	A	A	121435835	1	1	73	0	1	0	0	0	0	0	0	0	15048	841	29	3		3	SORL1	11	121435835	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	14625678	121435835	13570681	258	80302											
ZNF202	7753	broad.mit.edu	37	chr11	123598271	123598271	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctcttcctctctaacctGggagatctcatcaggtctgg	10	12	5	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123598271	A	A	123598271	4	1	73	1	0	0	0	0	0	1	0	0	17889	1357	47	4	1089	4	ZNF202	11	123598271	Nonsense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2162436	123598271	11408245	259	80303											
OR10G4	390264	broad.mit.edu	37	chr11	123886970	123886970	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcctgcggatccgcacctCagatgggaggcgcagagcct	13	14	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123886970	G	G	123886970	4	3	73	1	0	0	0	0	0	1	0	0	10995	838	29	4	691	4	OR10G4	11	123886970	Nonsense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	288699	123886970	11119546	260	80304											
ROBO4	54538	broad.mit.edu	37	chr11	124757359	124757359	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgaggagtttcggtcccAgggcccgccaggcaaccaga	14	13	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124757359	T	T	124757359	3	4	73	1	0	0	0	0	1	0	0	0	13627	188	7	5	950	5	ROBO4	11	124757359	Missense_Mutation	SNP	A	TCGA-17-Z044-01A-01W-0746-08	870389	124757359	10249157	261	80305											
STT3A	3703	broad.mit.edu	37	chr11	125482928	125482928	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggctttctttctcatcacCtacacctttcattcaacctg	3	14	5	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125482928	G	G	125482928	2	3	73	1	0	0	0	0	0	0	0	1	15451	668	24	4		4	STT3A	11	125482928	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	725569	125482928	9523588	262	80306											
FLI1	2313	broad.mit.edu	37	chr11	128642802	128642802	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggaactgtgtaaaatgAacaaggaggacttcctccgc	11	9	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128642802	G	G	128642802	3	3	73	1	0	0	0	0	1	0	0	0	5981	246	9	5	525	5	FLI1	11	128642802	Missense_Mutation	SNP	A	TCGA-17-Z044-01A-01W-0746-08	3159874	128642802	6363714	263	80307											
B3GAT1	27087	broad.mit.edu	37	chr11	134257560	134257560	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctcttcggcatctccaaGgctggctgcacccacggctc	10	17	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134257560	T	T	134257560	1	4	73	0	1	0	0	0	0	0	0	0	1258	1015	35	2		2	B3GAT1	11	134257560	5'UTR	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5614758	134257560	748956	264	80308											
FBXL14	144699	broad.mit.edu	37	chr12	1702092	1702092	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgagtaccttgaggcacgGcagctgcgtgatgcgctcca	14	11	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1702092	A	A	1702092	3	1	73	1	0	0	0	0	1	0	0	0	5767	1203	42	4	123	4	FBXL14	12	1702092	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08		1702092	132149803	265	80309											
NTF3	4908	broad.mit.edu	37	chr12	5591951	5591951	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctctctgcctctccctctCtctgtttctctctgtatcgc	5	17	7	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5591951	A	A	5591951	1	1	73	0	1	0	0	0	0	0	0	0	10791	928	32	3		3	NTF3	12	5591951	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3889859	5591951	128259944	266	80310											
VWF	7450	broad.mit.edu	37	chr12	6122594	6122594	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttttgtttctttggcgggTttattttggaactttttttt	8	3	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6122594	A	A	6122594	1	1	73	0	1	0	0	0	0	0	0	0	17373	1740	60	5		5	VWF	12	6122594	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	530643	6122594	127729301	267	80311											
LTBR	4055	broad.mit.edu	37	chr12	6500211	6500211	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtagggcccggggaagcAgagccctaagggattaaggc	17	8	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6500211	G	G	6500211	1	3	73	0	1	0	0	0	0	0	0	0	9164	203	7	5		5	LTBR	12	6500211	3'UTR	SNP	A	TCGA-17-Z044-01A-01W-0746-08	377617	6500211	127351684	268	80312											
CD163	9332	broad.mit.edu	37	chr12	7653807	7653807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatccatcatgtttgcaatCccaaagagctgactcattcc	5	14	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7653807	A	A	7653807	3	1	73	1	0	0	0	0	1	0	0	0	2997	855	30	3	3141	3	CD163	12	7653807	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1153596	7653807	126198088	269	80313											
GYS2	2998	broad.mit.edu	37	chr12	21727064	21727064	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgagtaagagggagggagGaaggaatatttaccttatca	15	3	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21727064	T	T	21727064	1	4	73	0	1	0	0	0	0	0	0	0	6978	1189	41	3		3	GYS2	12	21727064	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	14073257	21727064	112124831	270	80314											
PKP2	5318	broad.mit.edu	37	chr12	32974305	32974305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactggtccacttccggcCgtgaggttctgcagagctcc	11	15	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32974305	A	A	32974305	2	1	73	1	0	0	0	0	0	0	0	1	12080	639	23	1		1	PKP2	12	32974305	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	11247241	32974305	100877590	271	80315											
C12orf40	283461	broad.mit.edu	37	chr12	40066981	40066981	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtttcctgtcacttctAtgttgaattccagtgtgttc	9	8	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40066981	G	G	40066981	1	3	73	0	1	0	0	0	0	0	0	0	1699	464	16	5		5	C12orf40	12	40066981	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	7092676	40066981	93784914	272	80316											
SCN8A	6334	broad.mit.edu	37	chr12	52184399	52184399	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggctgctttgtgcctaatCctctcctcaccacccatcca	5	17	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52184399	T	T	52184399	1	4	73	0	1	0	0	0	0	0	0	0	14037	870	30	4		4	SCN8A	12	52184399	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	12117418	52184399	81667496	273	80317											
KRT73	319101	broad.mit.edu	37	chr12	53004610	53004610	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcgatggccgtctccaGgttggcacactggggtcagg	16	11	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53004610	T	T	53004610	3	4	73	1	0	0	0	0	1	0	0	0	8557	991	35	2	514	2	KRT73	12	53004610	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	820211	53004610	80847285	274	80318											
KRT8	3856	broad.mit.edu	37	chr12	53311986	53311986	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaagaagaagaagaagaaGaacaagaagaagaagaagaa	12	1	0	12			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53311986	C	C	53311986	1	2	73	0	1	0	0	0	0	0	0	0	8564	957	33	4		4	KRT8	12	53311986	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	307376	53311986	80539909	275	80319											
GEFT	115557	broad.mit.edu	37	chr12	58010269	58010269	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagagccctcttgccactGgataaacaggtatgacgaat	10	11	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58010269	A	A	58010269	2	1	73	1	0	0	0	0	0	0	0	1	6392	1335	47	4		4	GEFT	12	58010269	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4698283	58010269	75841626	276	80320											
SLC16A7	9194	broad.mit.edu	37	chr12	60165237	60165237	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaattcttattttctttGaatttatttttttataaaca	2	3	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60165237	A	A	60165237	1	1	73	0	1	0	0	0	0	0	0	0	14526	1305	45	4		4	SLC16A7	12	60165237	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2154968	60165237	73686658	277	80321											
GRIP1	23426	broad.mit.edu	37	chr12	66838662	66838662	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatataggtcaaattcaacGtcgtgtgttgttgcagttca	9	7	4	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66838662	A	A	66838662	1	1	73	0	1	0	0	0	0	0	0	0	6853	1160	40	4		4	GRIP1	12	66838662	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	6673425	66838662	67013233	278	80322											
PTPRR	5801	broad.mit.edu	37	chr12	71315196	71315196	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtttcgtggaggtaaTtaactttagtttccctttta	7	5	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71315196	C	C	71315196	1	2	73	0	1	0	0	0	0	0	0	0	12918	1508	52	5		5	PTPRR	12	71315196	5'Flank	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4476534	71315196	62536699	279	80323											
E2F7	144455	broad.mit.edu	37	chr12	77424249	77424249	+	Intron	DEL	C	-	-													gaaagcgcacttgctgagcaCgtgttagctcatcccagagt							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77424249	-	-	77424249	6	5	73	0	1	1	0	1	0	0	0	0	4912	551	19	0		0	E2F7	12	77424249	Intron	DEL	C	TCGA-17-Z044-01A-01W-0746-08	6109053	77424249	56427646	280	80324											
HAL	3034	broad.mit.edu	37	chr12	96367894	96367894	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacgtaggctttagaagaaCtgaatgatacaatggattga	10	5	0	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96367894	G	G	96367894	1	3	73	0	1	0	0	0	0	0	0	0	7013	580	20	4		4	HAL	12	96367894	3'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	18943645	96367894	37484001	281	80325											
ANKS1B	56899	broad.mit.edu	37	chr12	99145047	99145047	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggccctgggttctaatgGcacccacaccacacaagggc	11	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99145047	A	A	99145047	1	1	73	0	1	0	0	0	0	0	0	0	689	1218	42	4		4	ANKS1B	12	99145047	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2777153	99145047	34706848	282	80326											
NUP37	79023	broad.mit.edu	37	chr12	102512215	102512215	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttcctgaatccccattctCaaagggattaaattctacca	5	11	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102512215	A	A	102512215	4	1	73	1	0	0	0	0	0	1	0	0	10859	835	29	3	934	3	NUP37	12	102512215	Nonsense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3367168	102512215	31339680	283	80327											
WSCD2	9671	broad.mit.edu	37	chr12	108604279	108604279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttgaatggtcctgcatGcgcttttctctccctcccac	6	16	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108604279	T	T	108604279	1	4	73	0	1	0	0	0	0	0	0	0	17534	1334	46	3		3	WSCD2	12	108604279	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	6092064	108604279	25247616	284	80328											
FOXN4	121643	broad.mit.edu	37	chr12	109719086	109719086	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgttcaacttgtaaagGttgttgctatgggaacaaga	13	4	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109719086	A	A	109719086	1	1	73	0	1	0	0	0	0	0	0	0	6082	1276	44	4		4	FOXN4	12	109719086	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1114807	109719086	24132809	285	80329											
CIT	11113	broad.mit.edu	37	chr12	120166499	120166499	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtccacgaaccttcacggaGaaagaatattgagttctaaa	8	8	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120166499	A	A	120166499	1	1	73	0	1	0	0	0	0	0	0	0	3469	957	33	4		4	CIT	12	120166499	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	10447413	120166499	13685396	286	80330											
TMEM132B	114795	broad.mit.edu	37	chr12	125900255	125900255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatccccaaggcacctccgcAgtggggaggaggggagtggc	18	11	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125900255	T	T	125900255	1	4	73	0	1	0	0	0	0	0	0	0	16169	203	7	5		5	TMEM132B	12	125900255	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	5733756	125900255	7951640	287	80331											
TMEM132D	121256	broad.mit.edu	37	chr12	129749929	129749929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaaggtggctcttgaaaaTgggcaaaatgtggggcggat	16	6	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129749929	A	A	129749929	1	1	73	0	1	0	0	0	0	0	0	0	16170	1479	51	5		5	TMEM132D	12	129749929	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	3849674	129749929	4101966	288	80332											
MTMR6	9107	broad.mit.edu	37	chr13	25826298	25826298	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatctctattctcctttttCattcataattaggtaataaa	2	7	4	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25826298	A	A	25826298	1	1	73	0	1	0	0	0	0	0	0	0	10041	841	29	3		3	MTMR6	13	25826298	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08		25826298	89343580	289	80333											
NALCN	259232	broad.mit.edu	37	chr13	102051510	102051510	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttggtgagcaagcacaaaaCcacagtctgggaaaaggaaa	11	7	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102051510	G	G	102051510	1	3	73	0	1	0	0	0	0	0	0	0	10242	522	18	4		4	NALCN	13	102051510	5'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	76225212	102051510	13118368	290	80334											
MYO16	23026	broad.mit.edu	37	chr13	109507749	109507750	+	Intron	DNP	GG	AT	AT													aactgtgaagaaagttgattGgaaagcaattagaattgatc							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	109507750	AT	AT	109507749	1	1	73	0	1	0	0	0	0	0	0	0	10158	1363	47	4		4	MYO16	13	109507749	Intron	DNP	GG	TCGA-17-Z044-01A-01W-0746-08	7456239	109507749	5662129	291	80335											
TMCO3	55002	broad.mit.edu	37	chr13	114149925	114149925	+	Frame_Shift_Del	DEL	G	-	-													gttgggaagaagcttcttctGggtgctgtttcccgtccttc							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114149925	-	-	114149925	7	5	73	1	0	1	0	1	0	0	0	0	16120	1357	47	0	31	0	TMCO3	13	114149925	Frame_Shift_Del	DEL	G	TCGA-17-Z044-01A-01W-0746-08	4642176	114149925	1019953	292	80336											
POTEG	404785	broad.mit.edu	37	chr14	19553789	19553789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccttggggagactacgacGacagcgctttcatggagccg	14	12	1	1	rs145666754		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19553789	T	T	19553789	3	4	73	1	0	0	0	0	1	0	0	0	12362	1058	37	3	375	3	POTEG	14	19553789	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08		19553789	87795751	293	80337											
POTEG	404785	broad.mit.edu	37	chr14	19573133	19573133	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccagaaataaataagggtGgtgatagaaaggtatacttt	10	3	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19573133	A	A	19573133	3	1	73	1	0	0	0	0	1	0	0	0	12362	1348	47	4	1261	4	POTEG	14	19573133	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	19344	19573133	87776407	294	80338											
OR11H4	390442	broad.mit.edu	37	chr14	20711024	20711024	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgacagagtttattctccTgggattccctggttgctgga	12	9	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20711024	A	A	20711024	3	1	73	1	0	0	0	0	1	0	0	0	11022	1580	55	5	76	5	OR11H4	14	20711024	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	1137891	20711024	86638516	295	80339											
TTC5	91875	broad.mit.edu	37	chr14	20764637	20764637	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaaaagattatcagtggatCctgtctcaatgttaaggact	9	6	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20764637	G	G	20764637	1	3	73	0	1	0	0	0	0	0	0	0	16837	870	30	4		4	TTC5	14	20764637	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	53613	20764637	86584903	296	80340											
CEBPE	1053	broad.mit.edu	37	chr14	23587048	23587048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctggaggggaaggcacGgagagacggagaggtgaggg	24	5	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23587048	T	T	23587048	1	4	73	0	1	0	0	0	0	0	0	0	3232	1131	39	1		1	CEBPE	14	23587048	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2822411	23587048	83762492	297	80341											
SLC22A17	51310	broad.mit.edu	37	chr14	23817863	23817863	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccgaagcctctgggttgGgtcgcacagctccaggcctg	13	15	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23817863	A	A	23817863	3	1	73	1	0	0	0	0	1	0	0	0	14561	1232	43	4	1096	4	SLC22A17	14	23817863	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	230815	23817863	83531677	298	80342											
MYH7	4625	broad.mit.edu	37	chr14	23901741	23901741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagggtggggaggaaaGgtcaggagctgcacaggatg	22	4	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23901741	T	T	23901741	1	4	73	0	1	0	0	0	0	0	0	0	10133	1015	35	2		2	MYH7	14	23901741	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	83878	23901741	83447799	299	80343											
NFATC4	4776	broad.mit.edu	37	chr14	24842414	24842414	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagccactgaccctacagaTgttcatcggcactgcagatg	10	12	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24842414	C	C	24842414	3	2	73	1	0	0	0	0	1	0	0	0	10460	1464	51	5	1604	5	NFATC4	14	24842414	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	940673	24842414	82507126	300	80344											
AKAP6	9472	broad.mit.edu	37	chr14	33107382	33107382	+	Intron	DEL	G	-	-													agggctagtggggatgtcaaGggggaatatgagctgggagc					rs71432071		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33107382	-	-	33107382	6	5	73	0	1	1	0	1	0	0	0	0	455	1015	35	0		0	AKAP6	14	33107382	Intron	DEL	G	TCGA-17-Z044-01A-01W-0746-08	8264968	33107382	74242158	301	80345											
LRFN5	145581	broad.mit.edu	37	chr14	42360569	42360569	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacttccctcactgccacaaGagtcgtgggttgcatccagt	9	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42360569	T	T	42360569	3	4	73	1	0	0	0	0	1	0	0	0	9028	942	33	3	1508	3	LRFN5	14	42360569	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	9253187	42360569	64988971	302	80346											
FSCB	84075	broad.mit.edu	37	chr14	44975066	44975066	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaagctctactgaaggAgacttttcagctggtggagg	13	8	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44975066	T	T	44975066	2	4	73	1	0	0	0	0	0	0	0	1	6126	291	11	5		5	FSCB	14	44975066	Silent	SNP	A	TCGA-17-Z044-01A-01W-0746-08	2614497	44975066	62374474	303	80347											
SOS2	6655	broad.mit.edu	37	chr14	50667828	50667828	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatcacagcagaaccattgTagtattaataaaagtgttca	6	7	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50667828	G	G	50667828	1	3	73	0	1	0	0	0	0	0	0	0	15051	1653	57	5		5	SOS2	14	50667828	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	5692762	50667828	56681712	304	80348											
GNG2	54331	broad.mit.edu	37	chr14	52420479	52420479	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctggtttagggcttggttAtctgcctttagaagtctttt	11	6	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52420479	T	T	52420479	1	4	73	0	1	0	0	0	0	0	0	0	6591	464	16	5		5	GNG2	14	52420479	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1752651	52420479	54929061	305	80349											
NID2	22795	broad.mit.edu	37	chr14	52514814	52514814	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgagctaggtgttgctcatCaatgtcgttaacaaatttaa	8	7	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52514814	T	T	52514814	1	4	73	0	1	0	0	0	0	0	0	0	10510	841	29	4		4	NID2	14	52514814	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	94335	52514814	54834726	306	80350											
SYNE2	23224	broad.mit.edu	37	chr14	64392128	64392129	+	Intron	DEL	TA	-	-													acgtagtagttgtatatattTatgagttacatgagatattt					rs140764947		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64392129	-	-	64392128	6	5	73	0	1	1	0	1	0	0	0	0	15565	1769	61	0		0	SYNE2	14	64392128	Intron	DEL	TA	TCGA-17-Z044-01A-01W-0746-08	11877314	64392128	42957412	307	80351											
EXD2	55218	broad.mit.edu	37	chr14	69697154	69697154	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtccatgtcctttgccCgtttttgatgcatggttttc	8	10	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69697154	G	G	69697154	1	3	73	0	1	0	0	0	0	0	0	0	5340	667	23	4		4	EXD2	14	69697154	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	5305026	69697154	37652386	308	80352											
PSEN1	5663	broad.mit.edu	37	chr14	73678425	73678425	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccatgtaattttcttaaaGgtattaaatttttctaaata	3	4	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73678425	C	C	73678425	1	2	73	0	1	0	0	0	0	0	0	0	12756	1015	35	4		4	PSEN1	14	73678425	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	3981271	73678425	33671115	309	80353											
TSHR	7253	broad.mit.edu	37	chr14	81511927	81511927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccagtgtacatcgttccCcctcacgtgtccatgtgttc	8	15	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81511927	A	A	81511927	1	1	73	0	1	0	0	0	0	0	0	0	16747	638	22	2		2	TSHR	14	81511927	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7833502	81511927	25837613	310	80354											
GPR65	8477	broad.mit.edu	37	chr14	88477857	88477857	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acggaaaacaaggaaaagaaGagaatcataaaactacttgt	8	5	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88477857	C	C	88477857	3	2	73	1	0	0	0	0	1	0	0	0	6771	933	33	4	668	4	GPR65	14	88477857	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	6965930	88477857	18871683	311	80355											
TTC7B	145567	broad.mit.edu	37	chr14	91233276	91233276	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccttcatgtccaaagtcaGcacaccaagaccactggccg	9	15	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91233276	A	A	91233276	1	1	73	0	1	0	0	0	0	0	0	0	16839	986	34	4		4	TTC7B	14	91233276	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2755419	91233276	16116264	312	80356											
SERPINA9	327657	broad.mit.edu	37	chr14	94942514	94942514	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccctgtccttgcatggttGgtgagccctgacacttgctt	11	12	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94942514	C	C	94942514	1	2	73	0	1	0	0	0	0	0	0	0	14208	1363	47	4		4	SERPINA9	14	94942514	5'UTR	SNP	G	TCGA-17-Z044-01A-01W-0746-08	3709238	94942514	12407026	313	80357											
SERPINA12	145264	broad.mit.edu	37	chr14	94986177	94986177	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggaggtggtggtgatggtGgtgatggagatggtggtggt	23	0	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94986177	A	A	94986177	1	1	73	0	1	0	0	0	0	0	0	0	14202	1363	47	4		4	SERPINA12	14	94986177	5'Flank	SNP	G	TCGA-17-Z044-01A-01W-0746-08	43663	94986177	12363363	314	80358											
HSP90AA1	3320	broad.mit.edu	37	chr14	102552661	102552661	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcctgaaaggcgaacgTctcaacctcctcctcctcca	6	17	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102552661	A	A	102552661	3	1	73	1	0	0	0	0	1	0	0	0	7470	1667	58	5	2183	5	HSP90AA1	14	102552661	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	7566484	102552661	4796879	315	80359											
APBA2	321	broad.mit.edu	37	chr15	29346296	29346296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaaccacagccccgatgGggactccagctctgactacg	9	17	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29346296	T	T	29346296	3	4	73	1	0	0	0	0	1	0	0	0	759	1232	43	2	211	2	APBA2	15	29346296	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08		29346296	73185096	316	80360											
RYR3	6263	broad.mit.edu	37	chr15	33785048	33785048	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcttaacaatgcttttcTcagtgttccgcttcctgtca	8	12	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33785048	A	A	33785048	1	1	73	0	1	0	0	0	0	0	0	0	13881	1566	54	5		5	RYR3	15	33785048	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4438752	33785048	68746344	317	80361											
RYR3	6263	broad.mit.edu	37	chr15	33938383	33938383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagatctgtttcttcctacGggacaaggcccaagtaatga	10	10	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33938383	T	T	33938383	1	4	73	0	1	0	0	0	0	0	0	0	13881	1131	39	1		1	RYR3	15	33938383	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	153335	33938383	68593009	318	80362											
LPCAT4	254531	broad.mit.edu	37	chr15	34651923	34651923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcaggcggttgggaccCtctgcttgctcttcagcaaa	11	12	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34651923	A	A	34651923	3	1	73	1	0	0	0	0	1	0	0	0	9000	680	24	2	316	2	LPCAT4	15	34651923	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	713540	34651923	67879469	319	80363											
CATSPER2	117155	broad.mit.edu	37	chr15	43927614	43927614	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcatgtgacatgttttttctCctgcagagcaaaaaaaaaaa	6	7	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43927614	T	T	43927614	2	4	73	1	0	0	0	0	0	0	0	1	2714	869	30	4		4	CATSPER2	15	43927614	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	9275691	43927614	58603778	320	80364											
SERF2	10169	broad.mit.edu	37	chr15	44087757	44087757	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctggagagaggaaatggCtgctgggagcagagctgctg	18	8	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44087757	A	A	44087757	1	1	73	0	1	0	0	0	0	0	0	0	14189	812	28	3		3	SERF2	15	44087757	3'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	160143	44087757	58443635	321	80365											
RSL24D1	51187	broad.mit.edu	37	chr15	55489338	55489338	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgttactttggggaaatGtggttctgcgccaccttgtg	13	9	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55489338	A	A	55489338	1	1	73	0	1	0	0	0	0	0	0	0	13812	1392	48	4		4	RSL24D1	15	55489338	5'Flank	SNP	G	TCGA-17-Z044-01A-01W-0746-08	11401581	55489338	47042054	322	80366											
LCTL	197021	broad.mit.edu	37	chr15	66850175	66850175	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtccttggggttactaatGtccacaggttccccccagtc	10	13	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66850175	A	A	66850175	2	1	73	1	0	0	0	0	0	0	0	1	8766	1368	48	4		4	LCTL	15	66850175	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	11360837	66850175	35681217	323	80367											
NOX5	79400	broad.mit.edu	37	chr15	69223111	69223111	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaccctgggggaacttccCgagctccgcgacctcgaagc	12	16	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69223111	T	T	69223111	1	4	73	0	1	0	0	0	0	0	0	0	10654	667	23	4		4	NOX5	15	69223111	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2372936	69223111	33308281	324	80368											
PDE8A	5151	broad.mit.edu	37	chr15	85659375	85659375	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcatgcagagctcagcagCgggagaactagattcccagg	13	10	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85659375	T	T	85659375	1	4	73	0	1	0	0	0	0	0	0	0	11747	783	27	4		4	PDE8A	15	85659375	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	16436264	85659375	16872017	325	80369											
AKAP13	11214	broad.mit.edu	37	chr15	86198537	86198537	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtctctgaggccaattatGatcttacctgcctggaatcc	8	11	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86198537	T	T	86198537	1	4	73	0	1	0	0	0	0	0	0	0	449	1305	45	3		3	AKAP13	15	86198537	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	539162	86198537	16332855	326	80370											
LASS3	204219	broad.mit.edu	37	chr15	101013123	101013123	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagttttttaatggcaaacGtttacctccagccaaatgtc	6	9	0	0	rs1566775	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101013123	C	C	101013123	1	2	73	0	1	0	0	0	0	0	0	0	8712	1160	40	4		4	LASS3	15	101013123	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	14814586	101013123	1518269	327	80371											
CRAMP1L	57585	broad.mit.edu	37	chr16	1720813	1720813	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggctgacgttgcagaggtGagtgcattgacctcacagct	13	10	1	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1720813	T	T	1720813	1	4	73	0	1	0	0	0	0	0	0	0	3878	1305	45	3		3	CRAMP1L	16	1720813	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08		1720813	88633940	328	80372											
DNAH3	55567	broad.mit.edu	37	chr16	21062989	21062989	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctaggagctccagagtgtAcctgtagcagcggtcggtga	14	9	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21062989	G	G	21062989	5	3	73	1	0	0	0	0	0	0	1	0	4643	405	14	5	8245	5	DNAH3	16	21062989	Splice_Site	SNP	A	TCGA-17-Z044-01A-01W-0746-08	19342176	21062989	69291764	329	80373											
UBFD1	56061	broad.mit.edu	37	chr16	23573886	23573886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtgagccaccgcgcttgGcccccttctctttttttctg	10	15	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23573886	T	T	23573886	1	4	73	0	1	0	0	0	0	0	0	0	17010	1218	42	3		3	UBFD1	16	23573886	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2510897	23573886	66780867	330	80374											
PRKCB	5579	broad.mit.edu	37	chr16	23942908	23942908	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagtggggaggagagaagcGagaggacaggtgccaggcaa	20	5	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23942908	A	A	23942908	1	1	73	0	1	0	0	0	0	0	0	0	12614	1073	37	4		4	PRKCB	16	23942908	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	369022	23942908	66411845	331	80375											
HS3ST4	9951	broad.mit.edu	37	chr16	26044045	26044045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggaggagcaggtttagCagacaacctcgcggatcttc	12	10	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26044045	A	A	26044045	1	1	73	0	1	0	0	0	0	0	0	0	7434	725	25	3		3	HS3ST4	16	26044045	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2101137	26044045	64310708	332	80376											
XPO6	23214	broad.mit.edu	37	chr16	28145144	28145144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgctacactctccactcCcccggacagcacattaccag	5	18	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28145144	A	A	28145144	1	1	73	0	1	0	0	0	0	0	0	0	17575	638	22	2		2	XPO6	16	28145144	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2101099	28145144	62209609	333	80377											
CDH8	1006	broad.mit.edu	37	chr16	61689166	61689166	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatggaattgaaaaaggCactgaaagtcctcttcattt	10	6	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61689166	G	G	61689166	1	3	73	0	1	0	0	0	0	0	0	0	3146	725	25	4		4	CDH8	16	61689166	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	33544022	61689166	28665587	334	80378											
ZFP1	162239	broad.mit.edu	37	chr16	75200864	75200864	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgtctcagtgaccagaAatgagcttctgaattactaa	8	9	2	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75200864	T	T	75200864	1	4	73	0	1	0	0	0	0	0	0	0	17762	29	1	5		5	ZFP1	16	75200864	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	13511698	75200864	15153889	335	80379											
CDH13	1012	broad.mit.edu	37	chr16	83251006	83251006	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctcactggaaagggagtGgatcaagagcctaaaggaat	14	7	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83251006	A	A	83251006	2	1	73	1	0	0	0	0	0	0	0	1	3129	1335	47	4		4	CDH13	16	83251006	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	8050142	83251006	7103747	336	80380											
ITGAE	3682	broad.mit.edu	37	chr17	3662735	3662735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagtcttggtgacactcCccacttgagtgatgttctgg	12	10	2	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3662735	T	T	3662735	3	4	73	1	0	0	0	0	1	0	0	0	7955	623	22	4	2808	4	ITGAE	17	3662735	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08		3662735	77532475	337	80381											
ZZEF1	23140	broad.mit.edu	37	chr17	3952950	3952950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgcactgagtgaatggCtctctctagagttcaacctg	10	10	3	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3952950	A	A	3952950	1	1	73	0	1	0	0	0	0	0	0	0	18384	812	28	3		3	ZZEF1	17	3952950	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	290215	3952950	77242260	338	80382											
MYBBP1A	10514	broad.mit.edu	37	chr17	4445980	4445980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgcttggtcaggaaggaGctcagtgctgtcgagtacac	14	9	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4445980	T	T	4445980	3	4	73	1	0	0	0	0	1	0	0	0	10102	962	34	3	1101	3	MYBBP1A	17	4445980	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	493030	4445980	76749230	339	80383											
TP53	7157	broad.mit.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1	rs121912666		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578190	C	C	7578190	3	2	73	1	0	0	0	0	1	0	0	0	16505	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-17-Z044-01A-01W-0746-08	3132210	7578190	73617020	340	80384											
DNAH2	146754	broad.mit.edu	37	chr17	7720753	7720753	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagatgggactcaggcaTgacaagtaggctccgagacc	15	9	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7720753	A	A	7720753	1	1	73	0	1	0	0	0	0	0	0	0	4642	1479	51	5		5	DNAH2	17	7720753	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	142563	7720753	73474457	341	80385											
MYH3	4621	broad.mit.edu	37	chr17	10541666	10541666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctcctccagctcccgGgcatagtcgctgcgctgttt	10	16	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10541666	T	T	10541666	2	4	73	1	0	0	0	0	0	0	0	1	10130	1219	43	2		2	MYH3	17	10541666	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2820913	10541666	70653544	342	80386											
DNAH9	1770	broad.mit.edu	37	chr17	11660099	11660099	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatctccacatgggagccAgaagcctcacgtgcagtttt	11	11	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11660099	G	G	11660099	1	3	73	0	1	0	0	0	0	0	0	0	4648	203	7	5		5	DNAH9	17	11660099	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1118433	11660099	69535111	343	80387											
NF1	4763	broad.mit.edu	37	chr17	29548866	29548866	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttttttaaaaaattcAggctctgctggttcttcatc	5	9	5	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29548866	T	T	29548866	5	4	73	1	0	0	0	0	0	0	1	0	10451	202	7	5	1698	5	NF1	17	29548866	Splice_Site	SNP	A	TCGA-17-Z044-01A-01W-0746-08	17888767	29548866	51646344	344	80388											
ACCN1	40	broad.mit.edu	37	chr17	31712384	31712384	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctttctcctgagtgaaccCcaccatttaagctgtggcca	8	13	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31712384	T	T	31712384	1	4	73	0	1	0	0	0	0	0	0	0	128	638	22	4		4	ACCN1	17	31712384	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2163518	31712384	49482826	345	80389											
UNC45B	146862	broad.mit.edu	37	chr17	33501226	33501226	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgattggcctggcacccagGaccctcccacattgccatct	8	18	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33501226	T	T	33501226	1	4	73	0	1	0	0	0	0	0	0	0	17115	1189	41	3		3	UNC45B	17	33501226	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1788842	33501226	47693984	346	80390											
CCDC56	28958	broad.mit.edu	37	chr17	40947469	40947469	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccttctcatggcccccCactttctaggcctcaccacc	4	21	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40947469	A	A	40947469	1	1	73	0	1	0	0	0	0	0	0	0	2854	609	21	2		2	CCDC56	17	40947469	3'UTR	SNP	C	TCGA-17-Z044-01A-01W-0746-08	7446243	40947469	40247741	347	80391											
GOSR2	9570	broad.mit.edu	37	chr17	45049583	45049583	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaccctggcttcctgcttTgcttctcccgccacccgctt	8	18	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45049583	C	C	45049583	1	2	73	0	1	0	0	0	0	0	0	0	6642	1827	63	5		5	GOSR2	17	45049583	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	4102114	45049583	36145627	348	80392											
GNGT2	2793	broad.mit.edu	37	chr17	47284969	47284969	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgcttcttcaagagtcTgggctcaggaggggaggaag	16	9	4	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47284969	C	C	47284969	1	2	73	0	1	0	0	0	0	0	0	0	6598	1595	55	5		5	GNGT2	17	47284969	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	2235386	47284969	33910241	349	80393											
CA10	56934	broad.mit.edu	37	chr17	50145599	50145599	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagtaagttcttacaaggtCtgatggttttgtaaggggct	12	4	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50145599	G	G	50145599	1	3	73	0	1	0	0	0	0	0	0	0	2537	928	32	4		4	CA10	17	50145599	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	2860630	50145599	31049611	350	80394											
MRPS23	51649	broad.mit.edu	37	chr17	55927331	55927331	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggctgggagcacacaccgaGagaagatgctccctacggtt	13	12	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55927331	C	C	55927331	3	2	73	1	0	0	0	0	1	0	0	0	9928	942	33	4	551	4	MRPS23	17	55927331	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	5781732	55927331	25267879	351	80395											
TRIM37	4591	broad.mit.edu	37	chr17	57157251	57157251	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctttcctagaagataaaGaggtaagaataattttaatt	6	4	0	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57157251	C	C	57157251	1	2	73	0	1	0	0	0	0	0	0	0	16635	957	33	4		4	TRIM37	17	57157251	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1229920	57157251	24037959	352	80396											
FTSJ3	117246	broad.mit.edu	37	chr17	61901709	61901709	+	Frame_Shift_Del	DEL	G	-	-													acctgatgtccagtgcctttGcttgttctttcagcttcttg							TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61901709	-	-	61901709	7	5	73	1	0	1	0	1	0	0	0	0	6149	1319	46	0	1607	0	FTSJ3	17	61901709	Frame_Shift_Del	DEL	G	TCGA-17-Z044-01A-01W-0746-08	4744458	61901709	19293501	353	80397											
SCN4A	6329	broad.mit.edu	37	chr17	62045324	62045324	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaagaaaatgtggagtcaGaggctaccctagggactggg	14	6	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62045324	C	C	62045324	1	2	73	0	1	0	0	0	0	0	0	0	14033	957	33	4		4	SCN4A	17	62045324	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	143615	62045324	19149886	354	80398											
PITPNC1	26207	broad.mit.edu	37	chr17	65404807	65404807	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctttcttccttccttccTtccttccttccttccttcct	0	19	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65404807	C	C	65404807	1	2	73	0	1	0	0	0	0	0	0	0	12044	1624	56	5		5	PITPNC1	17	65404807	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	3359483	65404807	15790403	355	80399											
DLGAP1	9229	broad.mit.edu	37	chr18	4216648	4216648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaagacaagcacagaaggCttagaatagacaacttctat	7	7	1	4			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4216648	A	A	4216648	1	1	73	0	1	0	0	0	0	0	0	0	4599	812	28	3		3	DLGAP1	18	4216648	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08		4216648	73860600	356	80400											
CELF4	56853	broad.mit.edu	37	chr18	35139351	35139351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagacacataggttttcaCaccctttagctcttctctct	4	14	4	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35139351	A	A	35139351	1	1	73	0	1	0	0	0	0	0	0	0	3248	493	17	3		3	CELF4	18	35139351	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	30922703	35139351	42937897	357	80401											
DCC	1630	broad.mit.edu	37	chr18	50785465	50785465	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatccctttattttgagccTgtgtgtgtctctgcacatga	8	11	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50785465	C	C	50785465	1	2	73	0	1	0	0	0	0	0	0	0	4315	1595	55	5		5	DCC	18	50785465	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	15646114	50785465	27291783	358	80402											
CCBE1	147372	broad.mit.edu	37	chr18	57229714	57229715	+	Intron	INS	-	A	A													tccagagaggtggagaaatgINSacataatgtgggcccacatg					rs139186821	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57229715	A	A	57229714	6	5	73	0	1	1	1	0	0	0	0	0	2757	1305	45	0		0	CCBE1	18	57229714	Intron	INS	-	TCGA-17-Z044-01A-01W-0746-08	6444249	57229714	20847534	359	80403											
CDH20	28316	broad.mit.edu	37	chr18	59159915	59159915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaaatgcccttcccctGgcttctctcatgacttcctt	5	14	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59159915	T	T	59159915	1	4	73	0	1	0	0	0	0	0	0	0	3136	1363	47	2		2	CDH20	18	59159915	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1930201	59159915	18917333	360	80404											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60051677	60051678	+	Intron	INS	-	CTC	CTC													tcctccaccctttctttcctINSctcctcctcctcttcctagc					rs146296467	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTC	60051678	CTC	CTC	60051677	6	5	73	0	1	1	1	0	0	0	0	0	16407	1566	54	0		0	TNFRSF11A	18	60051677	Intron	INS	-	TCGA-17-Z044-01A-01W-0746-08	891762	60051677	18025571	361	80405											
SERPINB11	89778	broad.mit.edu	37	chr18	61390496	61390496	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagggcacggaggcagcaGcagccactggggacagcatc	16	11	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61390496	A	A	61390496	3	1	73	1	0	0	0	0	1	0	0	0	14211	971	34	4	1068	4	SERPINB11	18	61390496	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1338819	61390496	16686752	362	80406											
TMX3	54495	broad.mit.edu	37	chr18	66360631	66360631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtggttctggaccctggCatccctgagctctccggggc	15	13	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66360631	A	A	66360631	1	1	73	0	1	0	0	0	0	0	0	0	16391	725	25	3		3	TMX3	18	66360631	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4970135	66360631	11716617	363	80407											
ARHGEF18	23370	broad.mit.edu	37	chr19	7506776	7506776	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctctgggcccccagcagCcacacctcgctcttccctca	8	20	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7506776	T	T	7506776	1	4	73	0	1	0	0	0	0	0	0	0	903	754	26	4		4	ARHGEF18	19	7506776	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08		7506776	51622207	364	80408											
LASS4	79603	broad.mit.edu	37	chr19	8292272	8292272	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacccaggctggagtgcaGtggtgcgatctcggctcact	14	12	3	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8292272	A	A	8292272	1	1	73	0	1	0	0	0	0	0	0	0	8713	1044	36	4		4	LASS4	19	8292272	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	785496	8292272	50836711	365	80409											
CD320	51293	broad.mit.edu	37	chr19	8367326	8367326	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgcccagggctgagtgacGgtggtggcaagtgcttgtcc	16	10	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8367326	T	T	8367326	1	4	73	0	1	0	0	0	0	0	0	0	3034	1131	39	1		1	CD320	19	8367326	3'UTR	SNP	G	TCGA-17-Z044-01A-01W-0746-08	75054	8367326	50761657	366	80410											
MUC16	94025	broad.mit.edu	37	chr19	9025727	9025727	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagccaggcagaagtgaggTgggcagggctggccttggtg	20	7	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9025727	A	A	9025727	1	1	73	0	1	0	0	0	0	0	0	0	10067	1711	59	5		5	MUC16	19	9025727	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	658401	9025727	50103256	367	80411											
TYK2	7297	broad.mit.edu	37	chr19	10463083	10463083	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taattgctctagcaaactccCggtggggctgcgggcctggc	14	12	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10463083	G	G	10463083	1	3	73	0	1	0	0	0	0	0	0	0	16936	667	23	4		4	TYK2	19	10463083	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	1437356	10463083	48665900	368	80412											
ZNF208	7757	broad.mit.edu	37	chr19	22154763	22154763	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttgtagggtgtctctcCagtgtgaattttcttatgtt	9	6	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22154763	A	A	22154763	4	1	73	1	0	0	0	0	0	1	0	0	17892	603	21	2	773	2	ZNF208	19	22154763	Nonsense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	11691680	22154763	36974220	369	80413											
KIAA0355	9710	broad.mit.edu	37	chr19	34791651	34791651	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgccctgaacgtcttctgCcgtgccagtactttcctcac	8	15	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34791651	T	T	34791651	2	4	73	1	0	0	0	0	0	0	0	1	8240	747	26	4		4	KIAA0355	19	34791651	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	12636888	34791651	24337332	370	80414											
ZNF222	7673	broad.mit.edu	37	chr19	44530046	44530046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggcgccggcccttctGcctgatccctgcaggacgct	14	16	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44530046	A	A	44530046	1	1	73	0	1	0	0	0	0	0	0	0	17902	1334	46	4		4	ZNF222	19	44530046	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	9738395	44530046	14598937	371	80415											
NPAS1	4861	broad.mit.edu	37	chr19	47531212	47531212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacagcgggaggcatcggGgagttggtgggatcgggagg	22	5	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47531212	T	T	47531212	1	4	73	0	1	0	0	0	0	0	0	0	10657	1247	43	2		2	NPAS1	19	47531212	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	3001166	47531212	11597771	372	80416											
LIG1	3978	broad.mit.edu	37	chr19	48660493	48660493	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactgaaacctctctgtctAccctcctttctgaccctatg	6	15	3	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48660493	G	G	48660493	1	3	73	0	1	0	0	0	0	0	0	0	8853	406	14	5		5	LIG1	19	48660493	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1129281	48660493	10468490	373	80417											
FPR1	2357	broad.mit.edu	37	chr19	52250113	52250113	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagccacccagatcacaagCccgttgcccaggaccccgag	9	19	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52250113	G	G	52250113	2	3	73	1	0	0	0	0	0	0	0	1	6098	726	26	4		4	FPR1	19	52250113	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	3589620	52250113	6878870	374	80418											
LILRB4	11006	broad.mit.edu	37	chr19	55178058	55178058	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctccctgcgttgcagtGgcactaatgggaacagggca	13	13	0	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55178058	A	A	55178058	1	1	73	0	1	0	0	0	0	0	0	0	8865	1363	47	4		4	LILRB4	19	55178058	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2927945	55178058	3950925	375	80419											
NLRP7	199713	broad.mit.edu	37	chr19	55435298	55435298	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattctcaactacccaggatGcctgaatatctgttttcaaa	5	11	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55435298	A	A	55435298	1	1	73	0	1	0	0	0	0	0	0	0	10577	1334	46	4		4	NLRP7	19	55435298	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	257240	55435298	3693685	376	80420											
HSPBP1	23640	broad.mit.edu	37	chr19	55789091	55789091	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgctggtcggccgcctgctCggcctccccagcagtggggg	16	15	0	0	rs147796402		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55789091	A	A	55789091	4	1	73	1	0	0	0	0	0	1	0	0	7496	893	31	3	769	3	HSPBP1	19	55789091	Nonsense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	353793	55789091	3339892	377	80421											
ZIM2	23619	broad.mit.edu	37	chr19	57286884	57286884	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtggttccaatggatcAtcatgagactctcctgcaga	11	9	3	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57286884	T	T	57286884	3	4	73	1	0	0	0	0	1	0	0	0	17810	214	8	5	831	5	ZIM2	19	57286884	Missense_Mutation	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1497793	57286884	1842099	378	80422											
USP29	57663	broad.mit.edu	37	chr19	57640645	57640645	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atataagacagattccttgaAatatatacaaagcaatagga	6	5	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57640645	G	G	57640645	3	3	73	1	0	0	0	0	1	0	0	0	17186	14	1	5	604	5	USP29	19	57640645	Missense_Mutation	SNP	A	TCGA-17-Z044-01A-01W-0746-08	353761	57640645	1488338	379	80423											
DEFB126	81623	broad.mit.edu	37	chr20	123362	123362	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaagaagaaacactggcCtggaacagggtcctgcacat	14	9	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123362	A	A	123362	1	1	73	0	1	0	0	0	0	0	0	0	4451	696	24	2		2	DEFB126	20	123362	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08		123362	62902158	380	80424											
SIRPD	128646	broad.mit.edu	37	chr20	1538148	1538148	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctcccaaaagaaattctAtgggaacaggtgagggagag	12	8	1	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1538148	G	G	1538148	1	3	73	0	1	0	0	0	0	0	0	0	14448	464	16	5		5	SIRPD	20	1538148	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	1414786	1538148	61487372	381	80425											
CHGB	1114	broad.mit.edu	37	chr20	5903748	5903748	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcaaacgtcagcatggccAgtttaggggaaaagagggac	14	7	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5903748	T	T	5903748	3	4	73	1	0	0	0	0	1	0	0	0	3370	188	7	5	972	5	CHGB	20	5903748	Missense_Mutation	SNP	A	TCGA-17-Z044-01A-01W-0746-08	4365600	5903748	57121772	382	80426											
CHGB	1114	broad.mit.edu	37	chr20	5903866	5903866	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctgaggacctggagtGggagcgctataggggcagag	19	9	0	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5903866	A	A	5903866	4	1	73	1	0	0	0	0	0	1	0	0	3370	1357	47	4	1090	4	CHGB	20	5903866	Nonsense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	118	5903866	57121654	383	80427											
PLCB1	23236	broad.mit.edu	37	chr20	8626754	8626754	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttacatttttcaggaatgGacaaatgaggttttcagttt	8	4	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8626754	A	A	8626754	4	1	73	1	0	0	0	0	0	1	0	0	12122	1183	41	4	408	4	PLCB1	20	8626754	Nonsense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	2722888	8626754	54398766	384	80428											
PLK1S1	55857	broad.mit.edu	37	chr20	21116985	21116985	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaattccctttcttagattCgtccaagtctagtccattgt	5	10	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21116985	T	T	21116985	1	4	73	0	1	0	0	0	0	0	0	0	12190	899	31	4		4	PLK1S1	20	21116985	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	12490231	21116985	41908535	385	80429											
C20orf70	140683	broad.mit.edu	37	chr20	31760818	31760818	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggccaagcagaaggcccagGaagctgagaaattgctgaac	13	9	0	3			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31760818	A	A	31760818	3	1	73	1	0	0	0	0	1	0	0	0	2138	1175	41	4	244	4	C20orf70	20	31760818	Missense_Mutation	SNP	G	TCGA-17-Z044-01A-01W-0746-08	10643833	31760818	31264702	386	80430											
RPRD1B	58490	broad.mit.edu	37	chr20	36689064	36689064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaagacctcaggcagtGggcgtactgggttggagaac	17	7	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36689064	T	T	36689064	1	4	73	0	1	0	0	0	0	0	0	0	13727	1363	47	2		2	RPRD1B	20	36689064	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4928246	36689064	26336456	387	80431											
TSHZ2	128553	broad.mit.edu	37	chr20	51744893	51744893	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttctgccttggtgcCttggttttattgtttgtttg	10	7	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51744893	G	G	51744893	1	3	73	0	1	0	0	0	0	0	0	0	16749	696	24	4		4	TSHZ2	20	51744893	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	15055829	51744893	11280627	388	80432											
PHACTR3	116154	broad.mit.edu	37	chr20	58350224	58350226	+	Intron	DEL	AGA	-	-													gaccaccctgtgatgaagggAgaaggaggctcaggccagga					rs149851531		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58350226	-	-	58350224	6	5	73	0	1	1	0	1	0	0	0	0	11906	319	11	0		0	PHACTR3	20	58350224	Intron	DEL	AGA	TCGA-17-Z044-01A-01W-0746-08	6605331	58350224	4675296	389	80433											
CDH4	1002	broad.mit.edu	37	chr20	60033812	60033812	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtgacaatggtgacagtgGtggtagtgatgatgatggtg	18	2	0	5			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60033812	C	C	60033812	1	2	73	0	1	0	0	0	0	0	0	0	3142	1276	44	4		4	CDH4	20	60033812	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	1683588	60033812	2991708	390	80434											
BAGE2	85319	broad.mit.edu	37	chr21	11059056	11059056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttattcagttttcccttAgaatgattcacaaactcttc	3	10	3	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11059056	G	G	11059056	1	3	73	0	1	0	0	0	0	0	0	0	1297	435	15	5		5	BAGE2	21	11059056	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08		11059056	37070839	391	80435											
GABPA	2551	broad.mit.edu	37	chr21	27135345	27135345	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttattctttacctttgAttcatctatattgggtactg	6	7	3	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27135345	G	G	27135345	1	3	73	0	1	0	0	0	0	0	0	0	6217	348	12	5		5	GABPA	21	27135345	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	16076289	27135345	20994550	392	80436											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744328	31744328	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctggactccacataggaCgtctggcagctggtgggctc	16	11	1	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31744328	G	G	31744328	2	3	73	1	0	0	0	0	0	0	0	1	8594	523	19	4		4	KRTAP13-2	21	31744328	Silent	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4608983	31744328	16385567	393	80437											
DSCAM	1826	broad.mit.edu	37	chr21	41550814	41550814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctcaagagttagctccCgggctcctctggagcaaggt	12	13	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41550814	A	A	41550814	1	1	73	0	1	0	0	0	0	0	0	0	4808	667	23	1		1	DSCAM	21	41550814	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	9806486	41550814	6579081	394	80438											
CDC45	8318	broad.mit.edu	37	chr22	19467788	19467788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccggcgcgcgaggtgagGgtgctgcgtgggggcgcagg	25	9	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19467788	T	T	19467788	1	4	73	0	1	0	0	0	0	0	0	0	3111	1247	43	2		2	CDC45	22	19467788	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08		19467788	31836778	395	80439											
CACNG2	10369	broad.mit.edu	37	chr22	37026262	37026262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggggtggcagtgggtaGgtagaccagttggtcaggta	19	4	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37026262	T	T	37026262	1	4	73	0	1	0	0	0	0	0	0	0	2583	1015	35	2		2	CACNG2	22	37026262	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	17558474	37026262	14278304	396	80440											
PARVB	29780	broad.mit.edu	37	chr22	44543581	44543581	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgggactgatcatcaggGtcagccctttcattctggta	12	11	5	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44543581	A	A	44543581	1	1	73	0	1	0	0	0	0	0	0	0	11563	1276	44	4		4	PARVB	22	44543581	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	7517319	44543581	6760985	397	80441											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45218371	45218371	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagtgcctgttagaccccaGaagccgcatcaatacatctt	7	12	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45218371	A	A	45218371	1	1	73	0	1	0	0	0	0	0	0	0	12707	957	33	4		4	PRR5-ARHGAP8	22	45218371	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	674790	45218371	6086195	398	80442											
BMX	660	broad.mit.edu	37	chrX	15565152	15565152	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagggcccttgaacacttaCgaagttacacatatagcctg	8	10	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15565152	G	G	15565152	1	3	73	0	1	0	0	0	0	0	0	0	1479	551	19	4		4	BMX	23	15565152	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08		15565152	139705408	399	80443											
CNKSR2	22866	broad.mit.edu	37	chrX	21549926	21549926	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagaccctcggccatttactAccctaacatgtttctacatc	4	14	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21549926	T	T	21549926	1	4	73	0	1	0	0	0	0	0	0	0	3639	406	14	5		5	CNKSR2	23	21549926	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	5984774	21549926	133720634	400	80444											
DMD	1756	broad.mit.edu	37	chrX	31718079	31718079	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgggaggccgaggtgaaCggatcatgagatcaggagct	16	7	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31718079	T	T	31718079	1	4	73	0	1	0	0	0	0	0	0	0	4620	551	19	4		4	DMD	23	31718079	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	10168153	31718079	123552481	401	80445											
SLC16A2	6567	broad.mit.edu	37	chrX	73698395	73698395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattttgcttgttagttgatGcagtttcttcctagcctcga	8	8	1	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73698395	A	A	73698395	1	1	73	0	1	0	0	0	0	0	0	0	14521	1334	46	4		4	SLC16A2	23	73698395	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	41980316	73698395	81572165	402	80446											
ZNF711	7552	broad.mit.edu	37	chrX	84519528	84519528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatgttctcaaagcatgGgtttttttaatacgttttct	6	5	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84519528	T	T	84519528	1	4	73	0	1	0	0	0	0	0	0	0	18244	1247	43	2		2	ZNF711	23	84519528	Intron	SNP	G	TCGA-17-Z044-01A-01W-0746-08	10821133	84519528	70751032	403	80447											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177555	89177555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagacaatgtacaaagcctGcccctgtggcccttgccaaa	8	15	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177555	T	T	89177555	2	4	73	1	0	0	0	0	0	0	0	1	15950	1306	46	3		3	TGIF2LX	23	89177555	Silent	SNP	G	TCGA-17-Z044-01A-01W-0746-08	4658027	89177555	66093005	404	80448											
NXF3	56000	broad.mit.edu	37	chrX	102342892	102342892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatacagaatattgccccCtgcctaataagttaaatgca	7	10	0	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102342892	A	A	102342892	1	1	73	0	1	0	0	0	0	0	0	0	10880	696	24	2		2	NXF3	23	102342892	Intron	SNP	C	TCGA-17-Z044-01A-01W-0746-08	13165337	102342892	52927668	405	80449											
IRS4	8471	broad.mit.edu	37	chrX	107977313	107977313	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttttggaggactcggagcAggtggtgggctcactctggg	18	8	2	0			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107977313	G	G	107977313	2	3	73	1	0	0	0	0	0	0	0	1	7912	175	7	5		5	IRS4	23	107977313	Silent	SNP	A	TCGA-17-Z044-01A-01W-0746-08	5634421	107977313	47293247	406	80450											
IGSF1	3547	broad.mit.edu	37	chrX	130417145	130417145	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcattagagcaaaggtcattCcatagattggcccttggcac	9	10	2	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130417145	G	G	130417145	3	3	73	1	0	0	0	0	1	0	0	0	7666	855	30	4	3324	4	IGSF1	23	130417145	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	22439832	130417145	24853415	407	80451											
IGSF1	3547	broad.mit.edu	37	chrX	130532628	130532628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaattgcattcagcagAggcaaagattacaaacaagc	7	7	1	2			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130532628	T	T	130532628	1	4	73	0	1	0	0	0	0	0	0	0	7666	319	11	5		5	IGSF1	23	130532628	Intron	SNP	A	TCGA-17-Z044-01A-01W-0746-08	115483	130532628	24737932	408	80452											
GPR112	139378	broad.mit.edu	37	chrX	135485478	135485478	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactctgagcccaacaactcCgttgtaagtaccagcatctc	6	14	2	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135485478	G	G	135485478	3	3	73	1	0	0	0	0	1	0	0	0	6694	652	23	4	8725	4	GPR112	23	135485478	Missense_Mutation	SNP	C	TCGA-17-Z044-01A-01W-0746-08	4952850	135485478	19785082	409	80453											
VAMP7	6845	broad.mit.edu	37	chrX	155163239	155163239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatcattttttattgcgTctatttgattcttctctctt	3	7	5	1			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155163239	C	C	155163239	1	2	73	0	1	0	0	0	0	0	0	0	17244	1682	58	5		5	VAMP7	23	155163239	Intron	SNP	T	TCGA-17-Z044-01A-01W-0746-08	19677761	155163239	107321	410	80454											
CAMTA1	23261	broad.mit.edu	37	chr1	6986602	6986605	+	Intron	DEL	TTCC	-	-													ttctttctctctctctttctTtccttccttccttccttctt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6986605	-	-	6986602	6	5	74	0	1	1	0	1	0	0	0	0	2639	1856	64	0		0	CAMTA1	1	6986602	Intron	DEL	TTCC	TCGA-17-Z045-01A-01W-0746-08		6986602	242264019	1	80455											
PER3	8863	broad.mit.edu	37	chr1	7902685	7902685	+	Intron	DEL	G	-	-													tactgttttaaaactctttaGgtgacattgacatcaagtaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7902685	-	-	7902685	6	5	74	0	1	1	0	1	0	0	0	0	11825	1015	35	0		0	PER3	1	7902685	Intron	DEL	G	TCGA-17-Z045-01A-01W-0746-08	916083	7902685	241347936	2	80456											
SLC45A1	50651	broad.mit.edu	37	chr1	8398030	8398030	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggcatgtgtatctacgcCttcagtgctgccttctactc	10	12	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8398030	T	T	8398030	2	4	74	1	0	0	0	0	0	0	0	1	14754	668	24	4		4	SLC45A1	1	8398030	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	495345	8398030	240852591	3	80457											
SLC25A33	84275	broad.mit.edu	37	chr1	9642417	9642417	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtcttttgtccagacggCgcgcctggtgttccgggaag	14	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9642417	T	T	9642417	3	4	74	1	0	0	0	0	1	0	0	0	14611	768	27	4	850	4	SLC25A33	1	9642417	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1244387	9642417	239608204	4	80458											
TARDBP	23435	broad.mit.edu	37	chr1	11078656	11078656	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccttgtttttactgttaaGactaacttggtttaagtttt	6	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11078656	T	T	11078656	1	4	74	0	1	0	0	0	0	0	0	0	15676	957	33	3		3	TARDBP	1	11078656	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1436239	11078656	238171965	5	80459											
PTCHD2	57540	broad.mit.edu	37	chr1	11563012	11563012	+	Intron	DEL	C	-	-													tttttgatttccaattgcctCttactcttaaaccccatatc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11563012	-	-	11563012	6	5	74	0	1	1	0	1	0	0	0	0	12839	928	32	0		0	PTCHD2	1	11563012	Intron	DEL	C	TCGA-17-Z045-01A-01W-0746-08	484356	11563012	237687609	6	80460											
CROCC	9696	broad.mit.edu	37	chr1	17201189	17201189	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttggcccggctggtctcgaActcctgacttcaagtgagtg	13	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17201189	G	G	17201189	1	3	74	0	1	0	0	0	0	0	0	0	3925	58	2	5		5	CROCC	1	17201189	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5638177	17201189	232049432	7	80461											
PADI1	29943	broad.mit.edu	37	chr1	17548722	17548722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaagcccccaccccactGtggccactcccctgaagaga	7	21	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17548722	T	T	17548722	1	4	74	0	1	0	0	0	0	0	0	0	11471	1392	48	3		3	PADI1	1	17548722	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	347533	17548722	231701899	8	80462											
TAS1R2	80834	broad.mit.edu	37	chr1	19183910	19183910	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatgacagccaccacacggGaaatgtagttactgtagtcc	9	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19183910	T	T	19183910	3	4	74	1	0	0	0	0	1	0	0	0	15682	1174	41	3	2141	3	TAS1R2	1	19183910	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1635188	19183910	230066711	9	80463											
PTPRU	10076	broad.mit.edu	37	chr1	29605971	29605971	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaatcctgcccccagatcAgctaccagagcatcgagtca	8	16	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29605971	T	T	29605971	3	4	74	1	0	0	0	0	1	0	0	0	12921	188	7	5	1605	5	PTPRU	1	29605971	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	10422061	29605971	219644650	10	80464											
HCRTR1	3061	broad.mit.edu	37	chr1	32085306	32085306	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgcaaggtcatcccctatCtacaggtgagctctgcccag	9	14	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32085306	A	A	32085306	3	1	74	1	0	0	0	0	1	0	0	0	7068	912	32	3	379	3	HCRTR1	1	32085306	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2479335	32085306	217165315	11	80465											
PHC2	1912	broad.mit.edu	37	chr1	33799908	33799908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctctgcacgagagagaGtaggaaaacaaagcagggga	14	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33799908	T	T	33799908	1	4	74	0	1	0	0	0	0	0	0	0	11912	1044	36	3		3	PHC2	1	33799908	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1714602	33799908	215450713	12	80466											
CSMD2	114784	broad.mit.edu	37	chr1	34164199	34164199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaagtggagaaggggtGcaggtgaaccatgatgcctg	18	5	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34164199	A	A	34164199	1	1	74	0	1	0	0	0	0	0	0	0	3979	1334	46	4		4	CSMD2	1	34164199	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	364291	34164199	215086422	13	80467											
CSMD2	114784	broad.mit.edu	37	chr1	34174809	34174809	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagttcacaggaaagttGggggacagcaaagtaccctg	13	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34174809	T	T	34174809	2	4	74	1	0	0	0	0	0	0	0	1	3979	1335	47	2		2	CSMD2	1	34174809	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	10610	34174809	215075812	14	80468											
CSMD2	114784	broad.mit.edu	37	chr1	34190165	34190165	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggaagttgggctcacactCcagaggctccccgtcactta	10	14	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34190165	A	A	34190165	4	1	74	1	0	0	0	0	0	1	0	0	3979	864	30	3	7955	3	CSMD2	1	34190165	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	15356	34190165	215060456	15	80469											
EPHA10	284656	broad.mit.edu	37	chr1	38227235	38227235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggccacttccaccagtgtgGagaaggcgctctcggctgcg	14	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38227235	T	T	38227235	3	4	74	1	0	0	0	0	1	0	0	0	5208	1174	41	3	2432	3	EPHA10	1	38227235	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4037070	38227235	211023386	16	80470											
KIAA0754	643314	broad.mit.edu	37	chr1	39877491	39877491	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgccttagaaaaggaAcagcatttaggccttttaca	11	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39877491	T	T	39877491	3	4	74	1	0	0	0	0	1	0	0	0	8262	40	2	5	1556	5	KIAA0754	1	39877491	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1650256	39877491	209373130	17	80471											
MYCL1	4610	broad.mit.edu	37	chr1	40363231	40363231	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggcacctggtccctcagcGccaagaatcgcgaacgcagg	13	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40363231	C	C	40363231	3	2	74	1	0	0	0	0	1	0	0	0	10114	1087	38	4	190	4	MYCL1	1	40363231	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	485740	40363231	208887390	18	80472											
RIMS3	9783	broad.mit.edu	37	chr1	41107561	41107561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaccacattcctggaggCcccagatgaggcaggacctg	12	15	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41107561	A	A	41107561	3	1	74	1	0	0	0	0	1	0	0	0	13480	739	26	3	913	3	RIMS3	1	41107561	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	744330	41107561	208143060	19	80473											
WDR65	149465	broad.mit.edu	37	chr1	43649515	43649515	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaggaacctaccaatggctCaaagagcctggatgtcattc	9	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43649515	A	A	43649515	4	1	74	1	0	0	0	0	0	1	0	0	17443	838	29	3	738	3	WDR65	1	43649515	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2541954	43649515	205601106	20	80474											
MED8	112950	broad.mit.edu	37	chr1	43851600	43851600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagataatctagcttattccCtcccactcctgctcaaagtc	4	15	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43851600	A	A	43851600	1	1	74	0	1	0	0	0	0	0	0	0	9546	696	24	2		2	MED8	1	43851600	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	202085	43851600	205399021	21	80475											
MED8	112950	broad.mit.edu	37	chr1	43853255	43853255	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcggtgttttttcatgcttCaagaccttgttcagagtgtt	10	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43853255	G	G	43853255	3	3	74	1	0	0	0	0	1	0	0	0	9546	825	29	4	744	4	MED8	1	43853255	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1655	43853255	205397366	22	80476											
PRDX1	5052	broad.mit.edu	37	chr1	45981386	45981386	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacttggcagttgagtttcTtaaattcttctgccctatca	6	10	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45981386	C	C	45981386	3	2	74	1	0	0	0	0	1	0	0	0	12570	1609	56	5	415	5	PRDX1	1	45981386	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2128131	45981386	203269235	23	80477											
NASP	4678	broad.mit.edu	37	chr1	46078970	46078970	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcctttttctgtttttggGagactggagctcactcttgt	10	9	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46078970	T	T	46078970	1	4	74	0	1	0	0	0	0	0	0	0	10266	1189	41	3		3	NASP	1	46078970	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	97584	46078970	203171651	24	80478											
RAD54L	8438	broad.mit.edu	37	chr1	46724319	46724319	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatattgtcccataacatctCcagtcagtcctgaatccttg	6	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46724319	G	G	46724319	1	3	74	0	1	0	0	0	0	0	0	0	13101	870	30	4		4	RAD54L	1	46724319	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	645349	46724319	202526302	25	80479											
SPATA6	54558	broad.mit.edu	37	chr1	48865330	48865330	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttatcctaaacataaaaaAtaaaaattaacttggtcaaa	2	5	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48865330	G	G	48865330	1	3	74	0	1	0	0	0	0	0	0	0	15129	116	4	5		5	SPATA6	1	48865330	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2141011	48865330	200385291	26	80480											
EPS15	2060	broad.mit.edu	37	chr1	51912599	51912599	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaattgatacaaaaccatAtttttaaaaaatcaattcaa	3	5	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51912599	G	G	51912599	1	3	74	0	1	0	0	0	0	0	0	0	5234	464	16	5		5	EPS15	1	51912599	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3047269	51912599	197338022	27	80481											
ZFYVE9	9372	broad.mit.edu	37	chr1	52704447	52704447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagatttaaaaggaacttGcattagtgaaagtgaagaat	9	3	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52704447	A	A	52704447	3	1	74	1	0	0	0	0	1	0	0	0	17797	1319	46	4	1364	4	ZFYVE9	1	52704447	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	791848	52704447	196546174	28	80482											
C1orf83	127428	broad.mit.edu	37	chr1	54562174	54562174	+	3'UTR	DEL	G	-	-													acggttccagccctgggccaGgcagagaggaaaatgggcct							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54562174	-	-	54562174	6	5	74	0	1	1	0	1	0	0	0	0	2082	1015	35	0		0	C1orf83	1	54562174	3'UTR	DEL	G	TCGA-17-Z045-01A-01W-0746-08	1857727	54562174	194688447	29	80483											
C8A	731	broad.mit.edu	37	chr1	57373827	57373827	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaactctacgtccatgagGaatgaaagtgaagcagacca	10	8	1	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57373827	T	T	57373827	1	4	74	0	1	0	0	0	0	0	0	0	2441	1189	41	3		3	C8A	1	57373827	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2811653	57373827	191876794	30	80484											
DAB1	1600	broad.mit.edu	37	chr1	57769290	57769290	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagacccagcagaagttgTgagttagcagaagtgagcac	12	9	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57769290	A	A	57769290	1	1	74	0	1	0	0	0	0	0	0	0	4250	1711	59	5		5	DAB1	1	57769290	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	395463	57769290	191481331	31	80485											
DAB1	1600	broad.mit.edu	37	chr1	58988292	58988292	+	Intron	DEL	C	-	-													atggaggttaagggcactgaCccctctgtgcagtcaaaaat							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58988292	-	-	58988292	6	5	74	0	1	1	0	1	0	0	0	0	4250	522	18	0		0	DAB1	1	58988292	Intron	DEL	C	TCGA-17-Z045-01A-01W-0746-08	1219002	58988292	190262329	32	80486											
CACHD1	57685	broad.mit.edu	37	chr1	65073500	65073500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgattctgttttttcagagAattagaaagcaagatcatca	8	5	4	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65073500	G	G	65073500	1	3	74	0	1	0	0	0	0	0	0	0	2563	261	9	5		5	CACHD1	1	65073500	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	6085208	65073500	184177121	33	80487											
DNAJC6	9829	broad.mit.edu	37	chr1	65831473	65831473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacatgccccctggacagCggtgtcccagttcatatgcg	11	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65831473	T	T	65831473	1	4	74	0	1	0	0	0	0	0	0	0	4693	783	27	4		4	DNAJC6	1	65831473	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	757973	65831473	183419148	34	80488											
DNAJC6	9829	broad.mit.edu	37	chr1	65845187	65845187	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgcagaatcccaaaaatGtctgtgttgtccactgcttg	8	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65845187	A	A	65845187	3	1	74	1	0	0	0	0	1	0	0	0	4693	1377	48	4	493	4	DNAJC6	1	65845187	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	13714	65845187	183405434	35	80489											
SGIP1	84251	broad.mit.edu	37	chr1	67098906	67098906	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttttggacctctcactaTtggaattttctatattaatt	4	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67098906	C	C	67098906	1	2	74	0	1	0	0	0	0	0	0	0	14319	1508	52	5		5	SGIP1	1	67098906	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1253719	67098906	182151715	36	80490											
RPE65	6121	broad.mit.edu	37	chr1	68895600	68895600	+	Silent	SNP	C	T	T													cctgggctcaccaccacactCagaactacacctgtttatca							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68895600	T	T	68895600	2	4	74	1	0	0	0	0	0	0	0	1	13656	813	29	4		4	RPE65	1	68895600	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1796694	68895600	180355021	37	80491	365	2									
RPE65	6121	broad.mit.edu	37	chr1	68895602	68895602	+	Missense_Mutation	SNP	G	T	T													tgggctcaccaccacactcaGaactacacctgtttatcaga							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68895602	T	T	68895602	3	4	74	1	0	0	0	0	1	0	0	0	13656	933	33	3	146	3	RPE65	1	68895602	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2	68895602	180355019	38	80492	365	2									
LRRC7	57554	broad.mit.edu	37	chr1	70300559	70300559	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaattttggaaggtaagaAtaagaaatttaaattatgca	8	3	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70300559	T	T	70300559	1	4	74	0	1	0	0	0	0	0	0	0	9107	116	4	5		5	LRRC7	1	70300559	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1404957	70300559	178950062	39	80493											
PTGER3	5733	broad.mit.edu	37	chr1	71437493	71437493	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattttgtgtatggtgtgagGagtaaaatataagtaataaa	10	0	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71437493	T	T	71437493	1	4	74	0	1	0	0	0	0	0	0	0	12850	1189	41	3		3	PTGER3	1	71437493	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1136934	71437493	177813128	40	80494											
LRRIQ3	127255	broad.mit.edu	37	chr1	74506933	74506933	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttaagtaaattctttctaTatttttctgcttttagtttt	3	5	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74506933	C	C	74506933	3	2	74	1	0	0	0	0	1	0	0	0	9117	1406	49	5	200	5	LRRIQ3	1	74506933	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3069440	74506933	174743688	41	80495											
C1orf173	127254	broad.mit.edu	37	chr1	75037337	75037337	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctccctctcctctgcggCtgtttctgccgtttcaccac	6	19	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75037337	T	T	75037337	3	4	74	1	0	0	0	0	1	0	0	0	2034	797	28	4	539	4	C1orf173	1	75037337	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	530404	75037337	174213284	42	80496											
C1orf173	127254	broad.mit.edu	37	chr1	75042380	75042380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattgaaggtgggataatGtgaccatatgatgaataaat	10	2	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75042380	T	T	75042380	1	4	74	0	1	0	0	0	0	0	0	0	2034	1392	48	3		3	C1orf173	1	75042380	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5043	75042380	174208241	43	80497											
C1orf173	127254	broad.mit.edu	37	chr1	75055654	75055654	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatgaccttctggcactttCatctgtgctgctgtcagtgt	10	10	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75055654	G	G	75055654	3	3	74	1	0	0	0	0	1	0	0	0	2034	835	29	4	2767	4	C1orf173	1	75055654	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	13274	75055654	174194967	44	80498											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76779423	76779423	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagagaagaataaaggaacCtccttctgtgactgcctttg	9	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76779423	T	T	76779423	1	4	74	0	1	0	0	0	0	0	0	0	15343	696	24	4		4	ST6GALNAC3	1	76779423	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1723769	76779423	172471198	45	80499											
LPHN2	23266	broad.mit.edu	37	chr1	82416074	82416074	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttttcccctgccagagaGattctgtgaagcattagact	8	9	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82416074	A	A	82416074	3	1	74	1	0	0	0	0	1	0	0	0	9003	942	33	4	1418	4	LPHN2	1	82416074	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5636651	82416074	166834547	46	80500											
WDR63	126820	broad.mit.edu	37	chr1	85551462	85551462	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagagtaccaacattgcCtacacatcagggacttcatt	8	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85551462	T	T	85551462	1	4	74	0	1	0	0	0	0	0	0	0	17441	696	24	4		4	WDR63	1	85551462	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3135388	85551462	163699159	47	80501											
COL24A1	255631	broad.mit.edu	37	chr1	86340469	86340469	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcatgccatacggcacagttCcccaacgcctgggccgtaga	11	15	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86340469	T	T	86340469	1	4	74	0	1	0	0	0	0	0	0	0	3715	870	30	4		4	COL24A1	1	86340469	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	789007	86340469	162910152	48	80502											
ODF2L	57489	broad.mit.edu	37	chr1	86826108	86826108	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaataaatgcagtagtcaCctgagttttatacatttcaa	5	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86826108	A	A	86826108	5	1	74	1	0	0	0	0	0	0	1	0	10923	521	18	3	859	3	ODF2L	1	86826108	Splice_Site	SNP	C	TCGA-17-Z045-01A-01W-0746-08	485639	86826108	162424513	49	80503											
GBP4	115361	broad.mit.edu	37	chr1	89652589	89652589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgtttgtgacttttgaaGctccttttaactggaatatc	7	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89652589	T	T	89652589	1	4	74	0	1	0	0	0	0	0	0	0	6338	986	34	3		3	GBP4	1	89652589	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2826481	89652589	159598032	50	80504											
HFM1	164045	broad.mit.edu	37	chr1	91778956	91778956	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatgtttagaatgggaaAtctgtgtttcagattttctt	9	4	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91778956	G	G	91778956	3	3	74	1	0	0	0	0	1	0	0	0	7150	101	4	5	1006	5	HFM1	1	91778956	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2126367	91778956	157471665	51	80505											
EVI5	7813	broad.mit.edu	37	chr1	93113200	93113200	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgggatcacctttagccatCctgactaaattgcttcttcc	6	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93113200	T	T	93113200	1	4	74	0	1	0	0	0	0	0	0	0	5331	870	30	4		4	EVI5	1	93113200	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1334244	93113200	156137421	52	80506											
SLC44A3	126969	broad.mit.edu	37	chr1	95311004	95311004	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgggtggctgtgctgctGagcctgggaactgcaggtaa	16	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95311004	T	T	95311004	2	4	74	1	0	0	0	0	0	0	0	1	14751	1277	45	3		3	SLC44A3	1	95311004	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2197804	95311004	153939617	53	80507											
PRMT6	55170	broad.mit.edu	37	chr1	107599749	107599749	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgggtgcacgtcctgccgGgaccagtggagactgtagag	16	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107599749	A	A	107599749	3	1	74	1	0	0	0	0	1	0	0	0	12646	1233	43	4	414	4	PRMT6	1	107599749	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	12288745	107599749	141650872	54	80508											
VAV3	10451	broad.mit.edu	37	chr1	108307794	108307794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtactgcccgtaaataacCaatctgaaagggaaaaaaga	8	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108307794	A	A	108307794	3	1	74	1	0	0	0	0	1	0	0	0	17260	593	21	2	1819	2	VAV3	1	108307794	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	708045	108307794	140942827	55	80509											
VAV3	10451	broad.mit.edu	37	chr1	108370261	108370261	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctttccaataatgttccaGaaagctattaccaacaaata	3	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108370261	T	T	108370261	1	4	74	0	1	0	0	0	0	0	0	0	17260	957	33	3		3	VAV3	1	108370261	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	62467	108370261	140880360	56	80510											
AKNAD1	254268	broad.mit.edu	37	chr1	109394758	109394758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttattgctgttttcaccatCccttttcgggttgagttggt	9	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109394758	A	A	109394758	3	1	74	1	0	0	0	0	1	0	0	0	464	855	30	3	2041	3	AKNAD1	1	109394758	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1024497	109394758	139855863	57	80511											
WDR47	22911	broad.mit.edu	37	chr1	109524461	109524461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgcaatcatccagccactCcaggtataaagtgctaaaat	7	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109524461	A	A	109524461	3	1	74	1	0	0	0	0	1	0	0	0	17427	856	30	3	479	3	WDR47	1	109524461	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	129703	109524461	139726160	58	80512											
GPR61	83873	broad.mit.edu	37	chr1	110086427	110086427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctccgaatctctcagcagCcgctccacgatggtcaccag	9	17	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110086427	A	A	110086427	3	1	74	1	0	0	0	0	1	0	0	0	6767	738	26	3	785	3	GPR61	1	110086427	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	561966	110086427	139164194	59	80513											
EPS8L3	79574	broad.mit.edu	37	chr1	110294630	110294630	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctcacctccagcttctctCcctggaccacagtcagttcc	6	19	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110294630	T	T	110294630	3	4	74	1	0	0	0	0	1	0	0	0	5239	855	30	4	380	4	EPS8L3	1	110294630	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	208203	110294630	138955991	60	80514											
FAM40A	85369	broad.mit.edu	37	chr1	110594553	110594553	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgggtgggagtgtgtcggGaaaagtgacatctttcactc	14	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110594553	T	T	110594553	1	4	74	0	1	0	0	0	0	0	0	0	5611	1189	41	3		3	FAM40A	1	110594553	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	299923	110594553	138656068	61	80515											
KCNA10	3744	broad.mit.edu	37	chr1	111060823	111060823	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactgacggtggatgtcaTtggtgggtagcagtgtttca	15	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111060823	C	C	111060823	3	2	74	1	0	0	0	0	1	0	0	0	8072	1493	52	5	952	5	KCNA10	1	111060823	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	466270	111060823	138189798	62	80516											
CHIA	27159	broad.mit.edu	37	chr1	111861779	111861779	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatggagccactcagggatGggatgcccctcaggaagtgc	14	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111861779	A	A	111861779	4	1	74	1	0	0	0	0	0	1	0	0	3373	1357	47	4	987	4	CHIA	1	111861779	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	800956	111861779	137388842	63	80517											
AP4B1	10717	broad.mit.edu	37	chr1	114443808	114443808	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttaatacatcaacaagatCccacaaggtagcagatctca	5	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114443808	A	A	114443808	1	1	74	0	1	0	0	0	0	0	0	0	753	870	30	3		3	AP4B1	1	114443808	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2582029	114443808	134806813	64	80518											
DENND2C	163259	broad.mit.edu	37	chr1	115144127	115144127	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacagctcattctccactcAcctttgaaaaaagattgaag	5	10	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115144127	T	T	115144127	5	4	74	1	0	0	0	0	0	0	1	0	4470	173	6	5	1005	5	DENND2C	1	115144127	Splice_Site	SNP	A	TCGA-17-Z045-01A-01W-0746-08	700319	115144127	134106494	65	80519											
PTGFRN	5738	broad.mit.edu	37	chr1	117516790	117516790	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgcaaagaatggaatttgAcaaaagcatgaaagagaata	10	3	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117516790	G	G	117516790	1	3	74	0	1	0	0	0	0	0	0	0	12856	290	10	5		5	PTGFRN	1	117516790	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2372663	117516790	131733831	66	80520											
VTCN1	79679	broad.mit.edu	37	chr1	117689464	117689464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccgtgtttcctatcagctAaaacagggaaaggaaggagc	11	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117689464	G	G	117689464	1	3	74	0	1	0	0	0	0	0	0	0	17361	377	13	5		5	VTCN1	1	117689464	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	172674	117689464	131561157	67	80521											
FAM46C	54855	broad.mit.edu	37	chr1	118166264	118166264	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgggacttcaggcccacAgaccaggaagaaatcaaaac	11	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118166264	T	T	118166264	2	4	74	1	0	0	0	0	0	0	0	1	5618	175	7	5		5	FAM46C	1	118166264	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	476800	118166264	131084357	68	80522											
SPAG17	200162	broad.mit.edu	37	chr1	118550775	118550775	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcatagcgtgagctttcTacccgcatacacttcacctg	9	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118550775	C	C	118550775	2	2	74	1	0	0	0	0	0	0	0	1	15095	1509	53	5		5	SPAG17	1	118550775	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	384511	118550775	130699846	69	80523											
HSD3B2	3284	broad.mit.edu	37	chr1	119964340	119964340	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttataaccactgcacttGggagtggggagtggggcaca	15	8	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119964340	T	T	119964340	1	4	74	0	1	0	0	0	0	0	0	0	7458	1363	47	2		2	HSD3B2	1	119964340	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1413565	119964340	129286281	70	80524											
PDE4DIP	9659	broad.mit.edu	37	chr1	144912277	144912277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccattaaggcttgcacCaacttctctgcagcagccta	6	14	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144912277	A	A	144912277	3	1	74	1	0	0	0	0	1	0	0	0	11737	593	21	2	5172	2	PDE4DIP	1	144912277	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	24947937	144912277	104338344	71	80525											
NBPF10	100132406	broad.mit.edu	37	chr1	145310260	145310260	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtcagtgagctttactctCttcctagtctcaggccatgc	10	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145310260	A	A	145310260	1	1	74	0	1	0	0	0	0	0	0	0	10287	928	32	3		3	NBPF10	1	145310260	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	397983	145310260	103940361	72	80526											
GJA5	2702	broad.mit.edu	37	chr1	147231431	147231431	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaggatgttctgtgaaGgtctggaatgtctatcatgt	13	4	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147231431	C	C	147231431	1	2	74	0	1	0	0	0	0	0	0	0	6468	1015	35	4		4	GJA5	1	147231431	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1921171	147231431	102019190	73	80527											
SNX27	81609	broad.mit.edu	37	chr1	151638447	151638447	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcatggacagtacgacagtGaattactttgccttatttga	10	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151638447	C	C	151638447	2	2	74	1	0	0	0	0	0	0	0	1	15011	1277	45	4		4	SNX27	1	151638447	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4407016	151638447	97612174	74	80528											
RORC	6097	broad.mit.edu	37	chr1	151779972	151779972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggacagccccacaggtgaCtcggtttcagtgctgaagag	13	10	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151779972	A	A	151779972	3	1	74	1	0	0	0	0	1	0	0	0	13641	564	20	3	27	3	RORC	1	151779972	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	141525	151779972	97470649	75	80529											
THEM5	284486	broad.mit.edu	37	chr1	151820642	151820642	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgactttggccaatgccccAggggcccatacttacttttt	9	12	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151820642	T	T	151820642	1	4	74	0	1	0	0	0	0	0	0	0	15982	203	7	5		5	THEM5	1	151820642	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	40670	151820642	97429979	76	80530											
LCE1E	353135	broad.mit.edu	37	chr1	152760043	152760043	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaggtcccaccgtcacagaCcccagagctctgactgctgc	9	17	2	3	rs148284954	byFrequency	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152760043	G	G	152760043	3	3	74	1	0	0	0	0	1	0	0	0	8735	507	18	4	270	4	LCE1E	1	152760043	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	939401	152760043	96490578	77	80531											
NPR1	4881	broad.mit.edu	37	chr1	153659432	153659432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcagtaggaccctgcacCctcctccaactcccaggggg	9	17	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153659432	A	A	153659432	1	1	74	0	1	0	0	0	0	0	0	0	10689	638	22	2		2	NPR1	1	153659432	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	899389	153659432	95591189	78	80532											
NPR1	4881	broad.mit.edu	37	chr1	153661419	153661419	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accacccccaccgccaccctCtgcccccagggagaacagca	7	22	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153661419	A	A	153661419	1	1	74	0	1	0	0	0	0	0	0	0	10689	928	32	3		3	NPR1	1	153661419	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1987	153661419	95589202	79	80533											
CREB3L4	148327	broad.mit.edu	37	chr1	153941652	153941652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttatctccatccagctaGgtcagtgttctttgtgggaa	10	10	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153941652	T	T	153941652	3	4	74	1	0	0	0	0	1	0	0	0	3891	1014	35	2	427	2	CREB3L4	1	153941652	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	280233	153941652	95308969	80	80534											
CLK2	1196	broad.mit.edu	37	chr1	155233108	155233108	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcttcacccaaggtcagCcgcttagctggttcatactc	10	13	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155233108	A	A	155233108	2	1	74	1	0	0	0	0	0	0	0	1	3569	726	26	3		3	CLK2	1	155233108	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1291456	155233108	94017513	81	80535											
PKLR	5313	broad.mit.edu	37	chr1	155263996	155263996	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtccctaaaacccacagAgtgccgaacctcaaggcctc	9	15	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155263996	T	T	155263996	1	4	74	0	1	0	0	0	0	0	0	0	12071	319	11	5		5	PKLR	1	155263996	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	30888	155263996	93986625	82	80536											
KIAA0907	22889	broad.mit.edu	37	chr1	155893538	155893538	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataaaagatgcagaattcTgctttcattttccatgctat	5	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155893538	G	G	155893538	1	3	74	0	1	0	0	0	0	0	0	0	8269	1595	55	5		5	KIAA0907	1	155893538	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	629542	155893538	93357083	83	80537											
KIAA0907	22889	broad.mit.edu	37	chr1	155893549	155893549	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagaattctgctttcatttTccatgctattttacatatct	4	9	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155893549	C	C	155893549	1	2	74	0	1	0	0	0	0	0	0	0	8269	1798	62	5		5	KIAA0907	1	155893549	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	11	155893549	93357072	84	80538											
IQGAP3	128239	broad.mit.edu	37	chr1	156505057	156505057	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctggggacaaagaaacaGgtgcgcgtggctgtgcctct	14	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156505057	T	T	156505057	1	4	74	0	1	0	0	0	0	0	0	0	7886	1015	35	2		2	IQGAP3	1	156505057	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	611508	156505057	92745564	85	80539											
IQGAP3	128239	broad.mit.edu	37	chr1	156520175	156520175	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggagaaaaaaaagatgtgAccccaagctagtctctctag	10	8	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156520175	C	C	156520175	1	2	74	0	1	0	0	0	0	0	0	0	7886	290	10	5		5	IQGAP3	1	156520175	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	15118	156520175	92730446	86	80540											
TTC24	164118	broad.mit.edu	37	chr1	156552732	156552732	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagtgttctggggctgggCaccaggcctcctgggaggtc	18	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156552732	T	T	156552732	1	4	74	0	1	0	0	0	0	0	0	0	16818	725	25	4		4	TTC24	1	156552732	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	32557	156552732	92697889	87	80541											
INSRR	3645	broad.mit.edu	37	chr1	156812172	156812172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccttctttcactccccagGgtcttcctggtccctacctc	5	19	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156812172	T	T	156812172	1	4	74	0	1	0	0	0	0	0	0	0	7844	1247	43	2		2	INSRR	1	156812172	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	259440	156812172	92438449	88	80542											
ARHGEF11	9826	broad.mit.edu	37	chr1	156924781	156924781	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgttttaagaatcaaaaTaaaaattacatcaagccaaa	3	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156924781	C	C	156924781	1	2	74	0	1	0	0	0	0	0	0	0	898	1421	49	5		5	ARHGEF11	1	156924781	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	112609	156924781	92325840	89	80543											
FCRL5	83416	broad.mit.edu	37	chr1	157494130	157494130	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaccattgtctgcctcacaGgagtagattccagaatgttc	9	10	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157494130	C	C	157494130	2	2	74	1	0	0	0	0	0	0	0	1	5855	987	35	4		4	FCRL5	1	157494130	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	569349	157494130	91756491	90	80544											
FCRL5	83416	broad.mit.edu	37	chr1	157512753	157512753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagtcagtgagaagctgatgGatgctcccctttcacagcgg	12	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157512753	T	T	157512753	3	4	74	1	0	0	0	0	1	0	0	0	5855	1174	41	3	1962	3	FCRL5	1	157512753	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	18623	157512753	91737868	91	80545											
KIRREL	55243	broad.mit.edu	37	chr1	158035477	158035477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctcattctcttctctcCctccttggctaatcctttca	2	18	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158035477	A	A	158035477	1	1	74	0	1	0	0	0	0	0	0	0	8395	638	22	2		2	KIRREL	1	158035477	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	522724	158035477	91215144	92	80546											
SPTA1	6708	broad.mit.edu	37	chr1	158597323	158597323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcatatgatcttagcaCtgctctctgcatatgatctt	6	10	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158597323	A	A	158597323	1	1	74	0	1	0	0	0	0	0	0	0	15234	580	20	3		3	SPTA1	1	158597323	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	561846	158597323	90653298	93	80547											
SPTA1	6708	broad.mit.edu	37	chr1	158615408	158615408	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataaacagacacattggaaTtgacaagaaaaccttgcaac	7	8	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158615408	A	A	158615408	1	1	74	0	1	0	0	0	0	0	0	0	15234	1508	52	5		5	SPTA1	1	158615408	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	18085	158615408	90635213	94	80548											
MNDA	4332	broad.mit.edu	37	chr1	158813702	158813702	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacttgctctgcttcttTtgatactaaactccattaac	4	10	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158813702	C	C	158813702	1	2	74	0	1	0	0	0	0	0	0	0	9770	1856	64	5		5	MNDA	1	158813702	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	198294	158813702	90436919	95	80549											
PYHIN1	149628	broad.mit.edu	37	chr1	158914669	158914669	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaatactttcagatacAgaaaaatacaaaccagagaa	5	6	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158914669	T	T	158914669	3	4	74	1	0	0	0	0	1	0	0	0	12973	188	7	5	1218	5	PYHIN1	1	158914669	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	100967	158914669	90335952	96	80550											
ITLN2	142683	broad.mit.edu	37	chr1	160914884	160914884	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttccgtctccaaatagcCggggttggaagatgggttct	12	8	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160914884	A	A	160914884	1	1	74	0	1	0	0	0	0	0	0	0	7981	667	23	1		1	ITLN2	1	160914884	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2000215	160914884	88335737	97	80551											
HSPA6	3310	broad.mit.edu	37	chr1	161495421	161495421	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cggtggagaaggccctgcggGatgccaagctggacaaggcc	17	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161495421	C	C	161495421	3	2	74	1	0	0	0	0	1	0	0	0	7484	1174	41	4	975	4	HSPA6	1	161495421	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	580537	161495421	87755200	98	80552											
FCGR3B	2215	broad.mit.edu	37	chr1	161595804	161595804	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggggacctcctggtgatCaccaggagggaaccacatat	12	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161595804	T	T	161595804	1	4	74	0	1	0	0	0	0	0	0	0	5842	841	29	4		4	FCGR3B	1	161595804	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	100383	161595804	87654817	99	80553											
UHMK1	127933	broad.mit.edu	37	chr1	162482255	162482255	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcattttcaaaagattcaGcagaaatgataaggcaccta	7	7	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162482255	A	A	162482255	1	1	74	0	1	0	0	0	0	0	0	0	17092	986	34	4		4	UHMK1	1	162482255	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	886451	162482255	86768366	100	80554											
LMX1A	4009	broad.mit.edu	37	chr1	165177461	165177461	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagtgacaccttccccggGagagggcttgttggcaaagc	15	10	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165177461	T	T	165177461	1	4	74	0	1	0	0	0	0	0	0	0	8935	1189	41	3		3	LMX1A	1	165177461	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2695206	165177461	84073160	101	80555											
LRRC52	440699	broad.mit.edu	37	chr1	165532869	165532869	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactacatcttcctgctgctCatcggcttctgcatcttcgc	7	15	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165532869	A	A	165532869	2	1	74	1	0	0	0	0	0	0	0	1	9097	813	29	3		3	LRRC52	1	165532869	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	355408	165532869	83717752	102	80556											
POU2F1	5451	broad.mit.edu	37	chr1	167341458	167341458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggaattatctttgtcGtaagttttcaggatatcttt	7	4	3	0	rs113539813		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167341458	T	T	167341458	1	4	74	0	1	0	0	0	0	0	0	0	12367	1160	40	3		3	POU2F1	1	167341458	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1808589	167341458	81909163	103	80557											
ADCY10	55811	broad.mit.edu	37	chr1	167839476	167839476	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgggttcacacagaacaAtcattccaagacactcacct	5	13	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167839476	G	G	167839476	1	3	74	0	1	0	0	0	0	0	0	0	293	116	4	5		5	ADCY10	1	167839476	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	498018	167839476	81411145	104	80558											
F5	2153	broad.mit.edu	37	chr1	169525952	169525952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccacagtcatatttgcgGtagtggatgtagcactgaca	12	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169525952	T	T	169525952	3	4	74	1	0	0	0	0	1	0	0	0	5391	1261	44	3	5870	3	F5	1	169525952	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1686476	169525952	79724669	105	80559											
TNR	7143	broad.mit.edu	37	chr1	175536650	175536650	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacctcagagccagggCaacgaggaaatgatggttga	12	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175536650	G	G	175536650	1	3	74	0	1	0	0	0	0	0	0	0	16461	725	25	4		4	TNR	1	175536650	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6010698	175536650	73713971	106	80560											
TNR	7143	broad.mit.edu	37	chr1	175654134	175654134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcctttctggcttttcCtatttcctttttttcatcaa	2	13	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175654134	A	A	175654134	1	1	74	0	1	0	0	0	0	0	0	0	16461	696	24	2		2	TNR	1	175654134	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	117484	175654134	73596487	107	80561											
TNR	7143	broad.mit.edu	37	chr1	175669444	175669444	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaagcttggccccatggtCaattatgctgcccataatta	8	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175669444	A	A	175669444	1	1	74	0	1	0	0	0	0	0	0	0	16461	841	29	3		3	TNR	1	175669444	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	15310	175669444	73581177	108	80562											
FAM5B	57795	broad.mit.edu	37	chr1	177247574	177247575	+	Intron	DNP	GG	AT	AT													aaaaaagcacccagggaaatGggtgtgcagcctcctttctc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	177247575	AT	AT	177247574	1	1	74	0	1	0	0	0	0	0	0	0	5644	1363	47	4		4	FAM5B	1	177247574	Intron	DNP	GG	TCGA-17-Z045-01A-01W-0746-08	1578130	177247574	72003047	109	80563											
CACNA1E	777	broad.mit.edu	37	chr1	181478967	181478967	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcatatagatgcagacaCttagaagaaaataaggtggg	11	4	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181478967	T	T	181478967	1	4	74	0	1	0	0	0	0	0	0	0	2568	580	20	4		4	CACNA1E	1	181478967	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4231393	181478967	67771654	110	80564											
CACNA1E	777	broad.mit.edu	37	chr1	181549889	181549889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtgcatcaccatggaaGggtggaccactgtgctgtac	12	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181549889	T	T	181549889	3	4	74	1	0	0	0	0	1	0	0	0	2568	1000	35	2	950	2	CACNA1E	1	181549889	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	70922	181549889	67700732	111	80565											
CACNA1E	777	broad.mit.edu	37	chr1	181702006	181702006	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcatcgccgcgtcaggacAgaaggcaaggagtcctcttc	13	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181702006	T	T	181702006	2	4	74	1	0	0	0	0	0	0	0	1	2568	175	7	5		5	CACNA1E	1	181702006	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	152117	181702006	67548615	112	80566											
C1orf14	81626	broad.mit.edu	37	chr1	182908311	182908311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatagagcaaattattacCggaggcgtaaatcttcccac	8	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182908311	A	A	182908311	3	1	74	1	0	0	0	0	1	0	0	0	2020	666	23	1	909	1	C1orf14	1	182908311	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1206305	182908311	66342310	113	80567											
GLT25D2	23127	broad.mit.edu	37	chr1	183942746	183942746	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcatttaagcaaaagacTtgccttaggggtgattccgc	9	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183942746	A	A	183942746	1	1	74	0	1	0	0	0	0	0	0	0	6531	1624	56	5		5	GLT25D2	1	183942746	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1034435	183942746	65307875	114	80568											
HMCN1	83872	broad.mit.edu	37	chr1	185934884	185934884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaaacataaacaaaatcCatctggtcttgtgctaaatg	6	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185934884	A	A	185934884	1	1	74	0	1	0	0	0	0	0	0	0	7287	609	21	2		2	HMCN1	1	185934884	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1992138	185934884	63315737	115	80569											
HMCN1	83872	broad.mit.edu	37	chr1	185985050	185985050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaatgtattttgtgaccaCacaaataattgcctgaaata	6	6	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185985050	A	A	185985050	1	1	74	0	1	0	0	0	0	0	0	0	7287	493	17	3		3	HMCN1	1	185985050	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	50166	185985050	63265571	116	80570											
HMCN1	83872	broad.mit.edu	37	chr1	186036967	186036967	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattttcatctttttcagtAtctcctacaattgctggtgt	5	8	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186036967	G	G	186036967	2	3	74	1	0	0	0	0	0	0	0	1	7287	463	16	5		5	HMCN1	1	186036967	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	51917	186036967	63213654	117	80571											
HMCN1	83872	broad.mit.edu	37	chr1	186082028	186082028	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatacagccaattataccTgtgttgccagcaacattgca	8	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186082028	C	C	186082028	3	2	74	1	0	0	0	0	1	0	0	0	7287	1580	55	5	11360	5	HMCN1	1	186082028	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	45061	186082028	63168593	118	80572											
PRG4	10216	broad.mit.edu	37	chr1	186270774	186270774	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcgagagagggagggagTgtgactgcgacgcccaatgt	16	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186270774	A	A	186270774	3	1	74	1	0	0	0	0	1	0	0	0	12587	1696	59	5	260	5	PRG4	1	186270774	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	188746	186270774	62979847	119	80573											
PLA2G4A	5321	broad.mit.edu	37	chr1	186902039	186902039	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggctccacctggttagtaTacatttttaattttagtttt	6	7	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186902039	G	G	186902039	1	3	74	0	1	0	0	0	0	0	0	0	12096	1421	49	5		5	PLA2G4A	1	186902039	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	631265	186902039	62348582	120	80574											
FAM5C	339479	broad.mit.edu	37	chr1	190195207	190195207	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttatattaaaatacatgtCttacctgattcctcaaagtc	4	8	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190195207	A	A	190195207	1	1	74	0	1	0	0	0	0	0	0	0	5645	928	32	3		3	FAM5C	1	190195207	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3293168	190195207	59055414	121	80575											
CFHR1	3078	broad.mit.edu	37	chr1	196795979	196795979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtgtttctttccttttGtggaaaatggtcattctgaa	9	6	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196795979	T	T	196795979	3	4	74	1	0	0	0	0	1	0	0	0	3314	1377	48	3	284	3	CFHR1	1	196795979	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6600772	196795979	52454642	122	80576											
ZBTB41	360023	broad.mit.edu	37	chr1	197144308	197144308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtttttatccccagaaaCaaactatcaaacagtaagat	5	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197144308	A	A	197144308	1	1	74	0	1	0	0	0	0	0	0	0	17669	493	17	3		3	ZBTB41	1	197144308	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	348329	197144308	52106313	123	80577											
CRB1	23418	broad.mit.edu	37	chr1	197404272	197404272	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgacaatataaagggcctGcaagggtgtctaagtacaat	10	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197404272	T	T	197404272	2	4	74	1	0	0	0	0	0	0	0	1	3880	1306	46	3		3	CRB1	1	197404272	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	259964	197404272	51846349	124	80578											
KIF21B	23046	broad.mit.edu	37	chr1	200968940	200968940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatacaaggatgcggatGgggcccccgccaaccccagc	11	17	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200968940	T	T	200968940	1	4	74	0	1	0	0	0	0	0	0	0	8359	1363	47	2		2	KIF21B	1	200968940	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3564668	200968940	48281681	125	80579											
CACNA1S	779	broad.mit.edu	37	chr1	201035340	201035340	+	Intron	DEL	C	-	-													attcctctctggggctcctgCccgggccctctctcaccttc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201035340	-	-	201035340	6	5	74	0	1	1	0	1	0	0	0	0	2573	754	26	0		0	CACNA1S	1	201035340	Intron	DEL	C	TCGA-17-Z045-01A-01W-0746-08	66400	201035340	48215281	126	80580											
KLHL12	59349	broad.mit.edu	37	chr1	202888887	202888887	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttttaatgtctgtacctttCaactgaagcagacaggctgc	9	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202888887	A	A	202888887	3	1	74	1	0	0	0	0	1	0	0	0	8439	825	29	3	1401	3	KLHL12	1	202888887	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1853547	202888887	46361734	127	80581											
PIK3C2B	5287	broad.mit.edu	37	chr1	204428909	204428909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagattttcaggctccacCcagacccctcatagtgctgg	8	14	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204428909	A	A	204428909	1	1	74	0	1	0	0	0	0	0	0	0	12005	638	22	2		2	PIK3C2B	1	204428909	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1540022	204428909	44821712	128	80582											
NUCKS1	64710	broad.mit.edu	37	chr1	205696904	205696904	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgatcgaattttcttagtggGagggcccgaatctcttccat	10	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205696904	C	C	205696904	3	2	74	1	0	0	0	0	1	0	0	0	10815	1174	41	4	654	4	NUCKS1	1	205696904	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1267995	205696904	43553717	129	80583											
SLC41A1	254428	broad.mit.edu	37	chr1	205764004	205764004	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccactttgtacctggagCagtgcagctgtcatatagaa	10	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205764004	T	T	205764004	2	4	74	1	0	0	0	0	0	0	0	1	14743	697	25	4		4	SLC41A1	1	205764004	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	67100	205764004	43486617	130	80584											
SRGAP2	23380	broad.mit.edu	37	chr1	206634213	206634213	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaaaatccctccgtccCcctttccctacttcctgagc	5	18	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206634213	T	T	206634213	1	4	74	0	1	0	0	0	0	0	0	0	15264	638	22	4		4	SRGAP2	1	206634213	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	870209	206634213	42616408	131	80585											
FCAMR	83953	broad.mit.edu	37	chr1	207135631	207135631	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgccgcagaggtagcatccGatgtcatccggggacagttg	14	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207135631	T	T	207135631	2	4	74	1	0	0	0	0	0	0	0	1	5829	1048	37	3		3	FCAMR	1	207135631	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	501418	207135631	42114990	132	80586											
PFKFB2	5208	broad.mit.edu	37	chr1	207241211	207241211	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcttgctcactgcgtctaGctctgtgttaaagagtagat	10	8	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207241211	C	C	207241211	1	2	74	0	1	0	0	0	0	0	0	0	11856	986	34	4		4	PFKFB2	1	207241211	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	105580	207241211	42009410	133	80587											
CR2	1380	broad.mit.edu	37	chr1	207640346	207640347	+	Intron	DNP	TG	GT	GT													ccctcctgaaggacaaacagTgtgaacatgtaatgatgagg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	207640347	GT	GT	207640346	1	3	74	0	1	0	0	0	0	0	0	0	3874	1711	59	5		5	CR2	1	207640346	Intron	DNP	TG	TCGA-17-Z045-01A-01W-0746-08	399135	207640346	41610275	134	80588											
HSD11B1	3290	broad.mit.edu	37	chr1	209905757	209905757	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgggcagccttattaacCcatttctttaatctgtcatt	5	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209905757	G	G	209905757	1	3	74	0	1	0	0	0	0	0	0	0	7442	638	22	4		4	HSD11B1	1	209905757	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2265411	209905757	39344864	135	80589											
C1orf74	148304	broad.mit.edu	37	chr1	209956795	209956795	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctctggagctctgatgccCctgcacagttgcaatcatag	10	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209956795	T	T	209956795	3	4	74	1	0	0	0	0	1	0	0	0	2080	623	22	4	628	4	C1orf74	1	209956795	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	51038	209956795	39293826	136	80590											
USH2A	7399	broad.mit.edu	37	chr1	215844259	215844259	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaccatttttacaggcaGgtgctgacgggtgcaaacaa	12	9	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215844259	C	C	215844259	1	2	74	0	1	0	0	0	0	0	0	0	17162	1015	35	4		4	USH2A	1	215844259	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5887464	215844259	33406362	137	80591											
USH2A	7399	broad.mit.edu	37	chr1	215853828	215853828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttgtaggcaacagcagCgcaaacactacagcagagtt	10	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215853828	A	A	215853828	1	1	74	0	1	0	0	0	0	0	0	0	17162	783	27	3		3	USH2A	1	215853828	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9569	215853828	33396793	138	80592											
USH2A	7399	broad.mit.edu	37	chr1	215901465	215901465	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgggagataatgccattGggagattctggctttgtcca	12	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215901465	T	T	215901465	2	4	74	1	0	0	0	0	0	0	0	1	17162	1335	47	2		2	USH2A	1	215901465	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	47637	215901465	33349156	139	80593											
USH2A	7399	broad.mit.edu	37	chr1	216180237	216180237	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcatttaatttttatcTaaatgcttctcagtgatatg	5	6	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216180237	A	A	216180237	1	1	74	0	1	0	0	0	0	0	0	0	17162	1537	53	5		5	USH2A	1	216180237	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	278772	216180237	33070384	140	80594											
USH2A	7399	broad.mit.edu	37	chr1	216262456	216262456	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtttgccatgatcattaGttgtagttacttccactggt	8	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216262456	A	A	216262456	3	1	74	1	0	0	0	0	1	0	0	0	17162	1029	36	4	11024	4	USH2A	1	216262456	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	82219	216262456	32988165	141	80595											
PARP1	142	broad.mit.edu	37	chr1	226562154	226562154	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagacaaaggacacaggctaGagtgccaccagcaaaaaaag	10	10	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226562154	C	C	226562154	1	2	74	0	1	0	0	0	0	0	0	0	11548	957	33	4		4	PARP1	1	226562154	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	10299698	226562154	22688467	142	80596											
OBSCN	84033	broad.mit.edu	37	chr1	228475733	228475733	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatgcaggggagcaaagacGatgctctctgtgtctgactt	12	9	2	2	rs140417328	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228475733	T	T	228475733	1	4	74	0	1	0	0	0	0	0	0	0	10907	1073	37	3		3	OBSCN	1	228475733	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1913579	228475733	20774888	143	80597											
URB2	9816	broad.mit.edu	37	chr1	229795146	229795146	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagatgttctaattcgtaGtattggtatacatagaaaat	7	3	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229795146	T	T	229795146	1	4	74	0	1	0	0	0	0	0	0	0	17151	1044	36	3		3	URB2	1	229795146	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1319413	229795146	19455475	144	80598											
COG2	22796	broad.mit.edu	37	chr1	230805069	230805069	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaaactgttacaactagaGctttttttttatttacccac	4	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230805069	C	C	230805069	1	2	74	0	1	0	0	0	0	0	0	0	3690	986	34	4		4	COG2	1	230805069	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1009923	230805069	18445552	145	80599											
AGT	183	broad.mit.edu	37	chr1	230846067	230846067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagacaggaccttgtgcGcatccagccgggaggtgcag	17	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230846067	T	T	230846067	3	4	74	1	0	0	0	0	1	0	0	0	399	1087	38	3	943	3	AGT	1	230846067	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	40998	230846067	18404554	146	80600											
SIPA1L2	57568	broad.mit.edu	37	chr1	232650142	232650142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcgaatgcccctctccagtCggctctcctccagctcagac	9	18	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232650142	A	A	232650142	3	1	74	1	0	0	0	0	1	0	0	0	14443	884	31	3	4308	3	SIPA1L2	1	232650142	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1804075	232650142	16600479	147	80601											
TOMM20	9804	broad.mit.edu	37	chr1	235277206	235277206	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgcatttgtcagatggtcTacgcccttctcatattcacc	6	12	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235277206	C	C	235277206	2	2	74	1	0	0	0	0	0	0	0	1	16477	1509	53	5		5	TOMM20	1	235277206	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2627064	235277206	13973415	148	80602											
LYST	1130	broad.mit.edu	37	chr1	235972212	235972212	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacagtacaaatattacaagCtgcttttttaatttttggtg	6	5	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235972212	G	G	235972212	3	3	74	1	0	0	0	0	1	0	0	0	9216	797	28	4	9695	4	LYST	1	235972212	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	695006	235972212	13278409	149	80603											
NID1	4811	broad.mit.edu	37	chr1	236193008	236193008	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgaccagattgcccgggTgccccacgaaggtcacctca	10	14	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236193008	G	G	236193008	3	3	74	1	0	0	0	0	1	0	0	0	10509	1696	59	5	2219	5	NID1	1	236193008	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	220796	236193008	13057613	150	80604											
ACTN2	88	broad.mit.edu	37	chr1	236914888	236914888	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattcagagctacaacatcaGaatcagctcaagcaacccgt	7	12	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236914888	T	T	236914888	3	4	74	1	0	0	0	0	1	0	0	0	205	942	33	3	1833	3	ACTN2	1	236914888	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	721880	236914888	12335733	151	80605											
MTR	4548	broad.mit.edu	37	chr1	236973898	236973898	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggattataggaacatcagtGagtatttaccacatataatc	7	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236973898	T	T	236973898	1	4	74	0	1	0	0	0	0	0	0	0	10052	1305	45	3		3	MTR	1	236973898	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	59010	236973898	12276723	152	80606											
RYR2	6262	broad.mit.edu	37	chr1	237604629	237604629	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccccttaggaaaaattggAtgtaggggtgagaaaagaag	13	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237604629	T	T	237604629	3	4	74	1	0	0	0	0	1	0	0	0	13880	333	12	5	1066	5	RYR2	1	237604629	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	630731	237604629	11645992	153	80607											
RYR2	6262	broad.mit.edu	37	chr1	237617851	237617851	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactacgagccctgaagaatCggcaaaatctcttccaggaa	9	11	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237617851	A	A	237617851	2	1	74	1	0	0	0	0	0	0	0	1	13880	875	31	3		3	RYR2	1	237617851	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	13222	237617851	11632770	154	80608											
RYR2	6262	broad.mit.edu	37	chr1	237620013	237620013	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtcttggaaatccattctGaattctctgtatgagttgct	9	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237620013	T	T	237620013	2	4	74	1	0	0	0	0	0	0	0	1	13880	1277	45	3		3	RYR2	1	237620013	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2162	237620013	11630608	155	80609											
RYR2	6262	broad.mit.edu	37	chr1	237670056	237670056	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataagagaaaaactggcagAgaatatccatgaactctggg	10	6	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237670056	T	T	237670056	3	4	74	1	0	0	0	0	1	0	0	0	13880	304	11	5	2750	5	RYR2	1	237670056	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	50043	237670056	11580565	156	80610											
RYR2	6262	broad.mit.edu	37	chr1	237850877	237850877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttttgcactgtgttgtGtgctgctatgttgcatggat	11	7	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237850877	T	T	237850877	1	4	74	0	1	0	0	0	0	0	0	0	13880	1392	48	3		3	RYR2	1	237850877	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	180821	237850877	11399744	157	80611											
RYR2	6262	broad.mit.edu	37	chr1	237995920	237995920	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcaggggattgcttccgGaaacagtatgaagaccagct	12	10	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237995920	T	T	237995920	2	4	74	1	0	0	0	0	0	0	0	1	13880	1161	41	3		3	RYR2	1	237995920	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	145043	237995920	11254701	158	80612											
ZP4	57829	broad.mit.edu	37	chr1	238050785	238050785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccaagcgcacagaatcCaagagcagtggtggcgaggt	16	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050785	A	A	238050785	3	1	74	1	0	0	0	0	1	0	0	0	18347	593	21	2	1024	2	ZP4	1	238050785	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	54865	238050785	11199836	159	80613											
ZP4	57829	broad.mit.edu	37	chr1	238053214	238053214	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttcctctctgtaaccaccTtgtgttcagccgcgcctgct	8	16	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238053214	A	A	238053214	3	1	74	1	0	0	0	0	1	0	0	0	18347	1609	56	5	1309	5	ZP4	1	238053214	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2429	238053214	11197407	160	80614											
ZP4	57829	broad.mit.edu	37	chr1	238053464	238053465	+	Frame_Shift_Ins	INS	-	G	G													attctgcagctcgtgcagcaINSgcccttggttgtctggaggg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238053465	G	G	238053464	7	5	74	1	0	1	1	0	0	0	0	0	18347	188	7	0	1478	0	ZP4	1	238053464	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	250	238053464	11197157	161	80615											
CHRM3	1131	broad.mit.edu	37	chr1	240070931	240070931	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaccaccgatgaccctctGggaggtcataccgtctggca	12	13	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240070931	A	A	240070931	2	1	74	1	0	0	0	0	0	0	0	1	3409	1335	47	4		4	CHRM3	1	240070931	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2017467	240070931	9179690	162	80616											
CHRM3	1131	broad.mit.edu	37	chr1	240072267	240072267	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttcatcatcacttggaccCcatacaacatcatggttctg	5	14	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240072267	G	G	240072267	3	3	74	1	0	0	0	0	1	0	0	0	3409	623	22	4	1518	4	CHRM3	1	240072267	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1336	240072267	9178354	163	80617											
FMN2	56776	broad.mit.edu	37	chr1	240370180	240370180	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaggatctgagaaccaaaAtagctgaactagagaggcag	12	6	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240370180	G	G	240370180	3	3	74	1	0	0	0	0	1	0	0	0	6008	101	4	5	2086	5	FMN2	1	240370180	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	297913	240370180	8880441	164	80618											
CEP170	9859	broad.mit.edu	37	chr1	243336059	243336059	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttccattactgctgcagcAgaactgagagcccaatcttt	7	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	243336059	G	G	243336059	2	3	74	1	0	0	0	0	0	0	0	1	3280	175	7	5		5	CEP170	1	243336059	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2965879	243336059	5914562	165	80619											
ADSS	159	broad.mit.edu	37	chr1	244574782	244574782	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcatggcacacactgtttaCtgtcaaacaactttttgata	5	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	244574782	G	G	244574782	1	3	74	0	1	0	0	0	0	0	0	0	347	580	20	4		4	ADSS	1	244574782	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1238723	244574782	4675839	166	80620											
C1orf101	257044	broad.mit.edu	37	chr1	244747149	244747149	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgatacaataacctgtaCgaattgtttctcctagagac	6	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244747149	T	T	244747149	1	4	74	0	1	0	0	0	0	0	0	0	1996	551	19	4		4	C1orf101	1	244747149	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	172367	244747149	4503472	167	80621											
SMYD3	64754	broad.mit.edu	37	chr1	246165922	246165922	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgccaccacgcccggctaaTtttttgtatttttagtagag	8	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246165922	G	G	246165922	1	3	74	0	1	0	0	0	0	0	0	0	14937	1508	52	5		5	SMYD3	1	246165922	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1418773	246165922	3084699	168	80622											
SMYD3	64754	broad.mit.edu	37	chr1	246396341	246396341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaacatataccacacaGgggagaagcactccttcaat	8	10	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246396341	A	A	246396341	1	1	74	0	1	0	0	0	0	0	0	0	14937	1015	35	4		4	SMYD3	1	246396341	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	230419	246396341	2854280	169	80623											
AHCTF1	25909	broad.mit.edu	37	chr1	247063772	247063773	+	Splice_Site	DNP	CT	AA	AA													actagtgtcaggcgatagagCtggaagaaaaagataatttt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	247063773	AA	AA	247063772	5	1	74	1	0	0	0	0	0	0	1	0	408	811	28	3	5795	3	AHCTF1	1	247063772	Splice_Site	DNP	CT	TCGA-17-Z045-01A-01W-0746-08	667431	247063772	2186849	170	80624											
ZNF496	84838	broad.mit.edu	37	chr1	247473695	247473695	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagccagtctgggcaggatCtagaagggaccaatcctctt	12	10	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247473695	A	A	247473695	3	1	74	1	0	0	0	0	1	0	0	0	18072	913	32	3	1064	3	ZNF496	1	247473695	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	409923	247473695	1776926	171	80625											
NLRP3	114548	broad.mit.edu	37	chr1	247588619	247588619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaagctgcagatccagcCcagccagctggaattgttct	9	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588619	A	A	247588619	3	1	74	1	0	0	0	0	1	0	0	0	10573	623	22	2	1884	2	NLRP3	1	247588619	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	114924	247588619	1662002	172	80626											
NLRP3	114548	broad.mit.edu	37	chr1	247611665	247611665	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaacgactctgacagagtTatctgaagagtgcaacccag	10	9	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247611665	A	A	247611665	1	1	74	0	1	0	0	0	0	0	0	0	10573	1769	61	5		5	NLRP3	1	247611665	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	23046	247611665	1638956	173	80627											
OR2W5	441932	broad.mit.edu	37	chr1	247654783	247654783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtcctcctggttgtcatGtcccatgaccgctatgtggc	11	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247654783	T	T	247654783	3	4	74	1	0	0	0	0	1	0	0	0	11128	1377	48	3	356	3	OR2W5	1	247654783	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	43118	247654783	1595838	174	80628											
C1orf150	148823	broad.mit.edu	37	chr1	247737316	247737316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattattggtgtacaggaatGcttgggttttggatacctta	11	4	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247737316	T	T	247737316	1	4	74	0	1	0	0	0	0	0	0	0	2024	1334	46	3		3	C1orf150	1	247737316	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	82533	247737316	1513305	175	80629											
OR2L13	284521	broad.mit.edu	37	chr1	248247641	248247641	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcgggagatggccttatttCcggtcaagtagtcagccgcc	13	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248247641	G	G	248247641	1	3	74	0	1	0	0	0	0	0	0	0	11100	870	30	4		4	OR2L13	1	248247641	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	510325	248247641	1002980	176	80630											
OR2M3	127062	broad.mit.edu	37	chr1	248366366	248366366	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactaggtaaaaagcatacaCatcatggcaagggagaattc	9	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248366366	A	A	248366366	1	1	74	0	1	0	0	0	0	0	0	0	11105	493	17	3		3	OR2M3	1	248366366	5'Flank	SNP	C	TCGA-17-Z045-01A-01W-0746-08	118725	248366366	884255	177	80631											
OR2M3	127062	broad.mit.edu	37	chr1	248366457	248366457	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccacaccttcctcttctttCtggtcctggccatcttttca	4	17	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248366457	G	G	248366457	3	3	74	1	0	0	0	0	1	0	0	0	11105	912	32	4	90	4	OR2M3	1	248366457	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	91	248366457	884164	178	80632											
OR2T2	401992	broad.mit.edu	37	chr1	248616444	248616444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaggggaattcttcctgCtgggtctcatggcctatgac	13	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248616444	A	A	248616444	3	1	74	1	0	0	0	0	1	0	0	0	11114	796	28	3	348	3	OR2T2	1	248616444	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	249987	248616444	634177	179	80633											
OR2T3	343173	broad.mit.edu	37	chr1	248637470	248637470	+	Silent	SNP	T	A	A													ccgagttcctaccacacagcTgagcaggacatgatggtgtc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248637470	A	A	248637470	2	1	74	1	0	0	0	0	0	0	0	1	11117	1567	55	5		5	OR2T3	1	248637470	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	21026	248637470	613151	180	80634	366	2									
OR2T3	343173	broad.mit.edu	37	chr1	248637472	248637472	+	Missense_Mutation	SNP	A	G	G													gagttcctaccacacagctgAgcaggacatgatggtgtctg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248637472	G	G	248637472	3	3	74	1	0	0	0	0	1	0	0	0	11117	304	11	5	823	5	OR2T3	1	248637472	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2	248637472	613149	181	80635	366	2									
OR2T11	127077	broad.mit.edu	37	chr1	248789889	248789889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaggccagtttcagaaCtgctgggatctcacagaaaa	10	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248789889	A	A	248789889	3	1	74	1	0	0	0	0	1	0	0	0	11112	565	20	3	413	3	OR2T11	1	248789889	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	152417	248789889	460732	182	80636											
TMEM18	129787	broad.mit.edu	37	chr2	673480	673480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcgtgggtaatgctggtaCtcaaacccatgagacagtga	11	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	673480	A	A	673480	1	1	74	0	1	0	0	0	0	0	0	0	16221	580	20	3		3	TMEM18	2	673480	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08		673480	242525893	183	80637											
PXDN	7837	broad.mit.edu	37	chr2	1687855	1687855	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaacacacaactcacagcCtctcgagcttcgggagatgc	8	14	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1687855	T	T	1687855	3	4	74	1	0	0	0	0	1	0	0	0	12955	681	24	4	4030	4	PXDN	2	1687855	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1014375	1687855	241511518	184	80638											
ASAP2	8853	broad.mit.edu	37	chr2	9475237	9475237	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taaagatcaaacaggcccagGatgaagaaagaaggcagttg	12	6	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9475237	C	C	9475237	3	2	74	1	0	0	0	0	1	0	0	0	1015	1174	41	4	812	4	ASAP2	2	9475237	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	7787382	9475237	233724136	185	80639											
FAM84A	151354	broad.mit.edu	37	chr2	14782485	14782485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgagtttcattactatGgaaatatagatttttctcct	5	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14782485	T	T	14782485	1	4	74	0	1	0	0	0	0	0	0	0	5694	1363	47	2		2	FAM84A	2	14782485	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5307248	14782485	228416888	186	80640											
RAD51AP2	729475	broad.mit.edu	37	chr2	17697671	17697671	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtattttgagttgtcataCtgaaggaattaatgagtttt	9	3	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17697671	T	T	17697671	3	4	74	1	0	0	0	0	1	0	0	0	13095	565	20	4	1479	4	RAD51AP2	2	17697671	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2915186	17697671	225501702	187	80641											
KCNS3	3790	broad.mit.edu	37	chr2	18112663	18112663	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacgcaaggaggaaaaccacGagaaggactgggaccagaaa	13	8	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18112663	T	T	18112663	4	4	74	1	0	0	0	0	0	1	0	0	8160	1059	37	3	390	3	KCNS3	2	18112663	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	414992	18112663	225086710	188	80642											
APOB	338	broad.mit.edu	37	chr2	21236176	21236176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtagacattcgtggagaGgtctagaacacccaggagag	14	8	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21236176	T	T	21236176	3	4	74	1	0	0	0	0	1	0	0	0	787	1000	35	2	9639	2	APOB	2	21236176	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3123513	21236176	221963197	189	80643											
APOB	338	broad.mit.edu	37	chr2	21251056	21251056	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgatttcattgaccctAagtctttgggtctagatctg	9	8	5	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21251056	T	T	21251056	1	4	74	0	1	0	0	0	0	0	0	0	787	377	13	5		5	APOB	2	21251056	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	14880	21251056	221948317	190	80644											
CIB4	130106	broad.mit.edu	37	chr2	26804349	26804349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtagtcctggaggctccCtccccggcctgcatctcgtg	11	16	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26804349	A	A	26804349	1	1	74	0	1	0	0	0	0	0	0	0	3454	696	24	2		2	CIB4	2	26804349	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5553293	26804349	216395024	191	80645											
PLB1	151056	broad.mit.edu	37	chr2	28739721	28739721	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaagagtacattggaaggGcagctatggccagaggtaag	15	5	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28739721	A	A	28739721	2	1	74	1	0	0	0	0	0	0	0	1	12119	1190	42	4		4	PLB1	2	28739721	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1935372	28739721	214459652	192	80646											
PLB1	151056	broad.mit.edu	37	chr2	28826903	28826903	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctggaggccttcagcCgagcctaccgggtaagacca	13	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28826903	G	G	28826903	3	3	74	1	0	0	0	0	1	0	0	0	12119	644	23	4	3036	4	PLB1	2	28826903	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	87182	28826903	214372470	193	80647											
LCLAT1	253558	broad.mit.edu	37	chr2	30756248	30756248	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgcacccactgtaaaactGacttaagcattaaagcgatt	6	9	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30756248	C	C	30756248	1	2	74	0	1	0	0	0	0	0	0	0	8749	1305	45	4		4	LCLAT1	2	30756248	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1929345	30756248	212443125	194	80648											
LTBP1	4052	broad.mit.edu	37	chr2	33477883	33477883	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaggcctggggcccacaCtgtgagaaatgtccccttcc	12	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33477883	G	G	33477883	3	3	74	1	0	0	0	0	1	0	0	0	9160	564	20	4	2236	4	LTBP1	2	33477883	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2721635	33477883	209721490	195	80649											
SLC8A1	6546	broad.mit.edu	37	chr2	40656626	40656626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcttgccagctcgataCctcttgtagacatacttgta	7	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656626	A	A	40656626	3	1	74	1	0	0	0	0	1	0	0	0	14820	506	18	3	2274	3	SLC8A1	2	40656626	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	7178743	40656626	202542747	196	80650											
PPM1B	5495	broad.mit.edu	37	chr2	44428897	44428897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaaatgcaggaggcagcGtgatgatacaacgtgttaat	11	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44428897	T	T	44428897	3	4	74	1	0	0	0	0	1	0	0	0	12437	1145	40	3	561	3	PPM1B	2	44428897	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3772271	44428897	198770476	197	80651											
PREPL	9581	broad.mit.edu	37	chr2	44550032	44550032	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgaagagtttacattatttCttatggtcccttgccactat	6	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44550032	A	A	44550032	1	1	74	0	1	0	0	0	0	0	0	0	12581	928	32	3		3	PREPL	2	44550032	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	121135	44550032	198649341	198	80652											
ATP6V1E2	90423	broad.mit.edu	37	chr2	46755760	46755760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctctgccttggaggctcCatgggcagccgcttggtgtc	13	14	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46755760	A	A	46755760	1	1	74	0	1	0	0	0	0	0	0	0	1188	609	21	2		2	ATP6V1E2	2	46755760	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2205728	46755760	196443613	199	80653											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48807910	48807910	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagctgaaccttcctggCctcagggaatttcccagtgg	11	12	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48807910	A	A	48807910	2	1	74	1	0	0	0	0	0	0	0	1	15435	726	26	3		3	STON1-GTF2A1L	2	48807910	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2052150	48807910	194391463	200	80654											
LHCGR	3973	broad.mit.edu	37	chr2	48914966	48914966	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagttggaggtgtaagctGaaaaatctttccttctataa	9	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48914966	A	A	48914966	3	1	74	1	0	0	0	0	1	0	0	0	8834	1294	45	4	133	4	LHCGR	2	48914966	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	107056	48914966	194284407	201	80655											
FANCL	55120	broad.mit.edu	37	chr2	58468386	58468386	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatccctcatacacggttttCgaccggttctggggcagaag	11	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58468386	A	A	58468386	2	1	74	1	0	0	0	0	0	0	0	1	5727	871	31	3		3	FANCL	2	58468386	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9553420	58468386	184730987	202	80656											
KIAA1841	84542	broad.mit.edu	37	chr2	61304155	61304155	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaatgaagtactttgctGaatatttatctatggatgcc	8	6	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61304155	T	T	61304155	4	4	74	1	0	0	0	0	0	1	0	0	8331	1291	45	3	546	3	KIAA1841	2	61304155	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2835769	61304155	181895218	203	80657											
ACTR2	10097	broad.mit.edu	37	chr2	65473744	65473744	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggcatagtacgaaattgGgatgacatgaaacacctgtg	11	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65473744	A	A	65473744	4	1	74	1	0	0	0	0	0	1	0	0	211	1241	43	4	275	4	ACTR2	2	65473744	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4169589	65473744	177725629	204	80658											
MEIS1	4211	broad.mit.edu	37	chr2	66739435	66739435	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcatctaacagtaagtggAttctaaatgacatatataaa	6	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66739435	G	G	66739435	1	3	74	0	1	0	0	0	0	0	0	0	9560	348	12	5		5	MEIS1	2	66739435	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1265691	66739435	176459938	205	80659											
PLEK	5341	broad.mit.edu	37	chr2	68618572	68618572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattagttaaggcaaagaGcagcaatgtatacttttgga	9	5	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68618572	T	T	68618572	1	4	74	0	1	0	0	0	0	0	0	0	12148	986	34	3		3	PLEK	2	68618572	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1879137	68618572	174580801	206	80660											
PROKR1	10887	broad.mit.edu	37	chr2	68882117	68882117	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctgatcgccatcccttcCgcctacttcaccaccgagac	5	19	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68882117	T	T	68882117	2	4	74	1	0	0	0	0	0	0	0	1	12658	639	23	4		4	PROKR1	2	68882117	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	263545	68882117	174317256	207	80661											
GKN2	200504	broad.mit.edu	37	chr2	69173488	69173488	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggatatgtttgcagagtttCtcaatgggtgacccaagcag	13	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69173488	G	G	69173488	3	3	74	1	0	0	0	0	1	0	0	0	6489	912	32	4	142	4	GKN2	2	69173488	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	291371	69173488	174025885	208	80662											
GKN1	56287	broad.mit.edu	37	chr2	69207144	69207144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagttcggaaaaaacattGcaaacatgtgtcgtgggatt	11	6	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69207144	T	T	69207144	3	4	74	1	0	0	0	0	1	0	0	0	6488	1319	46	3	475	3	GKN1	2	69207144	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	33656	69207144	173992229	209	80663											
ANTXR1	84168	broad.mit.edu	37	chr2	69256238	69256238	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcgtggtggcgcgtgcctGctgtcccagctactcaggag	16	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69256238	C	C	69256238	1	2	74	0	1	0	0	0	0	0	0	0	711	1334	46	4		4	ANTXR1	2	69256238	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	49094	69256238	173943135	210	80664											
SLC4A5	57835	broad.mit.edu	37	chr2	74534679	74534679	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcagcaagatgggcactgtCgatctgcacaatgtgggcat	14	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74534679	A	A	74534679	1	1	74	0	1	0	0	0	0	0	0	0	14771	899	31	3		3	SLC4A5	2	74534679	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5278441	74534679	168664694	211	80665											
DCTN1	1639	broad.mit.edu	37	chr2	74592428	74592428	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagcactccttgactattCagtcctgagaggtccttgga	9	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74592428	A	A	74592428	1	1	74	0	1	0	0	0	0	0	0	0	4339	841	29	3		3	DCTN1	2	74592428	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	57749	74592428	168606945	212	80666											
C2orf65	130951	broad.mit.edu	37	chr2	74803613	74803613	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagcttgtaatgagaggccGatgactgggaagccatctgg	16	7	1	2	rs138006701	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74803613	T	T	74803613	4	4	74	1	0	0	0	0	0	1	0	0	2206	1059	37	3	714	3	C2orf65	2	74803613	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	211185	74803613	168395760	213	80667											
SEMA4F	10505	broad.mit.edu	37	chr2	74898556	74898556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgcttcccccagtgtGcatgagccctgtggttctgg	12	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74898556	T	T	74898556	1	4	74	0	1	0	0	0	0	0	0	0	14148	1334	46	3		3	SEMA4F	2	74898556	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	94943	74898556	168300817	214	80668											
REG3G	130120	broad.mit.edu	37	chr2	79255008	79255008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttgcatgggagaaaaatCcctccaccatcttaaaccct	5	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79255008	A	A	79255008	3	1	74	1	0	0	0	0	1	0	0	0	13321	855	30	3	423	3	REG3G	2	79255008	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4356452	79255008	163944365	215	80669											
REG1A	5967	broad.mit.edu	37	chr2	79348066	79348066	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaaggtaagatctcttttCcaccaaccaactctttctag	5	13	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79348066	A	A	79348066	1	1	74	0	1	0	0	0	0	0	0	0	13318	870	30	3		3	REG1A	2	79348066	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	93058	79348066	163851307	216	80670											
C2orf89	129293	broad.mit.edu	37	chr2	85097822	85097822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggggatgaagtcccaaaCtcgggtgtacgggacatgga	16	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85097822	A	A	85097822	3	1	74	1	0	0	0	0	1	0	0	0	2225	565	20	3	1194	3	C2orf89	2	85097822	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5749756	85097822	158101551	217	80671											
RNF103	7844	broad.mit.edu	37	chr2	86831528	86831529	+	Frame_Shift_Ins	INS	-	A	A													tggtatcagagggtgaagccINSaaaggtcagggaaagctaag							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86831529	A	A	86831528	7	5	74	1	0	1	1	0	0	0	0	0	13534	595	21	0	565	0	RNF103	2	86831528	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	1733706	86831528	156367845	218	80672											
RMND5A	64795	broad.mit.edu	37	chr2	87098403	87098403	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagttttgagtctggaagctGaccagaatgtgtttgaattc	11	5	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87098403	T	T	87098403	1	4	74	0	1	0	0	0	0	0	0	0	13508	1305	45	3		3	RMND5A	2	87098403	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	266875	87098403	156100970	219	80673											
RMND5A	64795	broad.mit.edu	37	chr2	87106727	87106727	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggatttgtgtgtgtgtGttggttctgaggtttatcta	14	3	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87106727	T	T	87106727	1	4	74	0	1	0	0	0	0	0	0	0	13508	1392	48	3		3	RMND5A	2	87106727	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8324	87106727	156092646	220	80674											
RPIA	22934	broad.mit.edu	37	chr2	88991200	88991200	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggacttcagcggaggcCggagcgaggcgtcgggatgc	21	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88991200	A	A	88991200	1	1	74	0	1	0	0	0	0	0	0	0	13664	667	23	1		1	RPIA	2	88991200	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1884473	88991200	154208173	221	80675											
LONRF2	164832	broad.mit.edu	37	chr2	100903408	100903408	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgtctggcattacccCaaaatgacttaaaatttgtt	5	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100903408	G	G	100903408	3	3	74	1	0	0	0	0	1	0	0	0	8982	594	21	4	234	4	LONRF2	2	100903408	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	11912208	100903408	142295965	222	80676											
NPAS2	4862	broad.mit.edu	37	chr2	101564848	101564848	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttctggttttacaagctAgaaagataagaattttgctt	7	4	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101564848	G	G	101564848	1	3	74	0	1	0	0	0	0	0	0	0	10658	435	15	5		5	NPAS2	2	101564848	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	661440	101564848	141634525	223	80677											
IL18RAP	8807	broad.mit.edu	37	chr2	103040985	103040985	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggtatacagcttctcaAaaactggccctgtgcctctg	9	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103040985	G	G	103040985	1	3	74	0	1	0	0	0	0	0	0	0	7718	29	1	5		5	IL18RAP	2	103040985	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1476137	103040985	140158388	224	80678											
IL18RAP	8807	broad.mit.edu	37	chr2	103053705	103053705	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctgtggaaaggagcaacCgaatcgtagtggatgaagtt	13	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103053705	G	G	103053705	3	3	74	1	0	0	0	0	1	0	0	0	7718	644	23	4	627	4	IL18RAP	2	103053705	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	12720	103053705	140145668	225	80679											
RGPD4	285190	broad.mit.edu	37	chr2	108494807	108494807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagaaacacagacctcCcacttctagacatgcacact	6	13	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108494807	A	A	108494807	1	1	74	0	1	0	0	0	0	0	0	0	13396	638	22	2		2	RGPD4	2	108494807	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5441102	108494807	134704566	226	80680											
FBLN7	129804	broad.mit.edu	37	chr2	112922668	112922668	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtccattttacctgcaaccCtgggttccggctggtcgggc	12	13	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112922668	T	T	112922668	3	4	74	1	0	0	0	0	1	0	0	0	5758	681	24	4	336	4	FBLN7	2	112922668	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4427861	112922668	130276705	227	80681											
GLI2	2736	broad.mit.edu	37	chr2	121746735	121746735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcgctctggacgagggcaCcgggcaggtgtatcccacgg	17	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121746735	A	A	121746735	3	1	74	1	0	0	0	0	1	0	0	0	6502	507	18	3	3295	3	GLI2	2	121746735	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8824067	121746735	121452638	228	80682											
POLR2D	5433	broad.mit.edu	37	chr2	128605863	128605863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatctctaacacctttacCtttcatctggatttcttttc	2	13	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128605863	A	A	128605863	1	1	74	0	1	0	0	0	0	0	0	0	12312	696	24	2		2	POLR2D	2	128605863	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6859128	128605863	114593510	229	80683											
POTEF	728378	broad.mit.edu	37	chr2	130832525	130832525	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccagaggtgtacagggaCagcacagcctggatggccac	15	12	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832525	T	T	130832525	2	4	74	1	0	0	0	0	0	0	0	1	12361	465	17	4		4	POTEF	2	130832525	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2226662	130832525	112366848	230	80684											
NCKAP5	344148	broad.mit.edu	37	chr2	133541934	133541934	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggtggcttcgggctccAttagttttgatttctgaggt	14	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133541934	G	G	133541934	3	3	74	1	0	0	0	0	1	0	0	0	10318	217	8	5	3307	5	NCKAP5	2	133541934	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2709409	133541934	109657439	231	80685											
NCKAP5	344148	broad.mit.edu	37	chr2	133542605	133542605	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttctcatcactgctctcTatgtgcagctcatcaaacgt	5	13	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133542605	C	C	133542605	3	2	74	1	0	0	0	0	1	0	0	0	10318	1512	53	5	3978	5	NCKAP5	2	133542605	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	671	133542605	109656768	232	80686											
NCKAP5	344148	broad.mit.edu	37	chr2	133727416	133727416	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaggcatacttgcctgtGctctacatgacaaaatgccc	7	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133727416	A	A	133727416	1	1	74	0	1	0	0	0	0	0	0	0	10318	1334	46	4		4	NCKAP5	2	133727416	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	184811	133727416	109471957	233	80687											
NCKAP5	344148	broad.mit.edu	37	chr2	134205092	134205092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttccccttcctttccCttcctttcccttcctttccc	0	21	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134205092	A	A	134205092	1	1	74	0	1	0	0	0	0	0	0	0	10318	696	24	2		2	NCKAP5	2	134205092	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	477676	134205092	108994281	234	80688											
LCT	3938	broad.mit.edu	37	chr2	136561677	136561677	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcttggagcgtctgtggtaGgtcccagtggtaaatggtca	14	7	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136561677	C	C	136561677	3	2	74	1	0	0	0	0	1	0	0	0	8765	991	35	4	1325	4	LCT	2	136561677	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2356585	136561677	106637696	235	80689											
THSD7B	80731	broad.mit.edu	37	chr2	137748572	137748572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgtctctgctggcacagGtgaatacctgtcctccccaa	8	15	1	1	rs149407903	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137748572	T	T	137748572	1	4	74	0	1	0	0	0	0	0	0	0	16003	1276	44	3		3	THSD7B	2	137748572	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1186895	137748572	105450801	236	80690											
NXPH2	11249	broad.mit.edu	37	chr2	139429201	139429201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccaatccagcccctccGtggcatgcaccacttcctta	5	19	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139429201	T	T	139429201	3	4	74	1	0	0	0	0	1	0	0	0	10886	1145	40	3	712	3	NXPH2	2	139429201	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1680629	139429201	103770172	237	80691											
LRP1B	53353	broad.mit.edu	37	chr2	141093280	141093280	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagctgccctacgttgataGagtacctcagactggtccag	10	12	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141093280	T	T	141093280	3	4	74	1	0	0	0	0	1	0	0	0	9042	942	33	3	1835	3	LRP1B	2	141093280	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1664079	141093280	102106093	238	80692											
LRP1B	53353	broad.mit.edu	37	chr2	141215061	141215061	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctataagaatgatacaccTggatatctgtgatggcatgc	10	7	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141215061	A	A	141215061	3	1	74	1	0	0	0	0	1	0	0	0	9042	1580	55	5	4138	5	LRP1B	2	141215061	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	121781	141215061	101984312	239	80693											
LRP1B	53353	broad.mit.edu	37	chr2	141259433	141259433	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacataaaaaatgaactgttGcatgactgttctggaaaaaa	7	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141259433	T	T	141259433	4	4	74	1	0	0	0	0	0	1	0	0	9042	1311	46	3	5274	3	LRP1B	2	141259433	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	44372	141259433	101939940	240	80694											
LRP1B	53353	broad.mit.edu	37	chr2	141457753	141457753	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctacatgcaattaccactAttatttctctagtaatctaa	3	9	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141457753	G	G	141457753	1	3	74	0	1	0	0	0	0	0	0	0	9042	464	16	5		5	LRP1B	2	141457753	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	198320	141457753	101741620	241	80695											
LRP1B	53353	broad.mit.edu	37	chr2	141773438	141773438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttctcaatccttcccaCgctgtcatctatttcatctt	4	15	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141773438	A	A	141773438	3	1	74	1	0	0	0	0	1	0	0	0	9042	536	19	3	12098	3	LRP1B	2	141773438	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	315685	141773438	101425935	242	80696											
LRP1B	53353	broad.mit.edu	37	chr2	142005043	142005043	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggaaaagccaattccaAtaagtcttttcaaaaccaca	4	9	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142005043	G	G	142005043	1	3	74	0	1	0	0	0	0	0	0	0	9042	116	4	5		5	LRP1B	2	142005043	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	231605	142005043	101194330	243	80697											
RBM43	375287	broad.mit.edu	37	chr2	152107565	152107565	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaattgttcacatgcccttTtgatcattcttttctctcta	3	10	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152107565	C	C	152107565	3	2	74	1	0	0	0	0	1	0	0	0	13245	1841	64	5	148	5	RBM43	2	152107565	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	10102522	152107565	91091808	244	80698											
NEB	4703	broad.mit.edu	37	chr2	152467372	152467372	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcatcccaagcttctgtGtataaatgctacagggcagg	10	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152467372	T	T	152467372	4	4	74	1	0	0	0	0	0	1	0	0	10397	1372	48	3	14288	3	NEB	2	152467372	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	359807	152467372	90732001	245	80699											
TANC1	85461	broad.mit.edu	37	chr2	159954388	159954388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccttggttatatatgtagTacctgcattgaaaataagca	8	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159954388	C	C	159954388	1	2	74	0	1	0	0	0	0	0	0	0	15663	1653	57	5		5	TANC1	2	159954388	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	7487016	159954388	83244985	246	80700											
LY75	4065	broad.mit.edu	37	chr2	160746710	160746710	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatttgctctatcacatgCaaataaaatctacctttaag	3	10	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160746710	T	T	160746710	1	4	74	0	1	0	0	0	0	0	0	0	9187	725	25	4		4	LY75	2	160746710	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	792322	160746710	82452663	247	80701											
PSMD14	10213	broad.mit.edu	37	chr2	162175365	162175365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcttagacttggaggagGtatgcctggactgggccagg	15	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162175365	T	T	162175365	3	4	74	1	0	0	0	0	1	0	0	0	12803	1261	44	3	31	3	PSMD14	2	162175365	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1428655	162175365	81024008	248	80702											
SCN3A	6328	broad.mit.edu	37	chr2	165972143	165972143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttttatttaactaactgGgaaatactgtgtcattgtgt	7	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165972143	T	T	165972143	1	4	74	0	1	0	0	0	0	0	0	0	14031	1247	43	2		2	SCN3A	2	165972143	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3796778	165972143	77227230	249	80703											
CSRNP3	80034	broad.mit.edu	37	chr2	166535905	166535905	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaatggtaccctttcgcTggtgccttacaccatgaccc	7	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166535905	C	C	166535905	3	2	74	1	0	0	0	0	1	0	0	0	3999	1580	55	5	1414	5	CSRNP3	2	166535905	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	563762	166535905	76663468	250	80704											
LRP2	4036	broad.mit.edu	37	chr2	170096348	170096348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttgcttctttgattcacTcttatgcaatatttattatg	4	7	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170096348	A	A	170096348	1	1	74	0	1	0	0	0	0	0	0	0	9043	1566	54	5		5	LRP2	2	170096348	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3560443	170096348	73103025	251	80705											
KBTBD10	10324	broad.mit.edu	37	chr2	170366651	170366651	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcccctcagtgtttactgtCtgcgtttcttatcttcagaa	6	11	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170366651	A	A	170366651	2	1	74	1	0	0	0	0	0	0	0	1	8060	900	32	3		3	KBTBD10	2	170366651	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	270303	170366651	72832722	252	80706											
MYO3B	140469	broad.mit.edu	37	chr2	171240248	171240248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttatcatggggtgaaacGcgcctccaatcccccccaca	7	16	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171240248	T	T	171240248	3	4	74	1	0	0	0	0	1	0	0	0	10171	1087	38	3	1260	3	MYO3B	2	171240248	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	873597	171240248	71959125	253	80707											
MAP1D	254042	broad.mit.edu	37	chr2	172926339	172926339	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagagatatttcacacagtAtagttttgccggctgcagtt	9	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172926339	G	G	172926339	3	3	74	1	0	0	0	0	1	0	0	0	9321	449	16	5	160	5	MAP1D	2	172926339	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1686091	172926339	70273034	254	80708											
WIPF1	7456	broad.mit.edu	37	chr2	175436403	175436403	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactccacgtcttgtcataCctgatcggcctggcgggtcc	10	15	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175436403	A	A	175436403	5	1	74	1	0	0	0	0	0	0	1	0	17494	521	18	3	397	3	WIPF1	2	175436403	Splice_Site	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2510064	175436403	67762970	255	80709											
PLEKHA3	65977	broad.mit.edu	37	chr2	179358546	179358546	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcaaagaatatgaaaatGatctaactgtatatttatgt	6	4	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179358546	T	T	179358546	1	4	74	0	1	0	0	0	0	0	0	0	12152	1305	45	3		3	PLEKHA3	2	179358546	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3922143	179358546	63840827	256	80710											
TTN	7273	broad.mit.edu	37	chr2	179434377	179434377	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actataataggtccagggacGtcagcatgttctccaactcc	8	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179434377	A	A	179434377	2	1	74	1	0	0	0	0	0	0	0	1	16861	1136	40	4		4	TTN	2	179434377	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	75831	179434377	63764996	257	80711											
TTN	7273	broad.mit.edu	37	chr2	179483204	179483204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacttctaagttacgtaCtggcccaggaacatctgaaa	8	10	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179483204	A	A	179483204	3	1	74	1	0	0	0	0	1	0	0	0	16861	565	20	3	61156	3	TTN	2	179483204	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	48827	179483204	63716169	258	80712											
TTN	7273	broad.mit.edu	37	chr2	179516970	179516970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaaacaatatcaaacaCagcaccatgagggtgtctac	6	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179516970	A	A	179516970	1	1	74	0	1	0	0	0	0	0	0	0	16861	493	17	3		3	TTN	2	179516970	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	33766	179516970	63682403	259	80713											
TTN	7273	broad.mit.edu	37	chr2	179517779	179517779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaatacctttaacaggtGggacttcaggttttttagga	10	6	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179517779	T	T	179517779	1	4	74	0	1	0	0	0	0	0	0	0	16861	1363	47	2		2	TTN	2	179517779	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	809	179517779	63681594	260	80714											
TTN	7273	broad.mit.edu	37	chr2	179554576	179554576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctttttctttgcaacagGaacgggaatcttttcttcag	7	9	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179554576	T	T	179554576	3	4	74	1	0	0	0	0	1	0	0	0	16861	1174	41	3	72683	3	TTN	2	179554576	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	36797	179554576	63644797	261	80715											
TTN	7273	broad.mit.edu	37	chr2	179582523	179582523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttttcttgcaaagaaagGtggaagtttgcgcgctgtaa	12	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179582523	T	T	179582523	3	4	74	1	0	0	0	0	1	0	0	0	16861	1261	44	3	79555	3	TTN	2	179582523	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	27947	179582523	63616850	262	80716											
TTN	7273	broad.mit.edu	37	chr2	179583008	179583008	+	Intron	DEL	A	-	-													catgtaaaagaggatgtttgAaaagaaagagagcaataaaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179583008	-	-	179583008	6	5	74	0	1	1	0	1	0	0	0	0	16861	261	9	0		0	TTN	2	179583008	Intron	DEL	A	TCGA-17-Z045-01A-01W-0746-08	485	179583008	63616365	263	80717											
TTN	7273	broad.mit.edu	37	chr2	179584853	179584853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaatcctggtattttcaCtctctctgatgacttcacct	5	11	4	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179584853	A	A	179584853	3	1	74	1	0	0	0	0	1	0	0	0	16861	565	20	3	81141	3	TTN	2	179584853	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1845	179584853	63614520	264	80718											
TTN	7273	broad.mit.edu	37	chr2	179585034	179585034	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaggaaaaaatgtgagaatCatggccacacaagttattag	10	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179585034	A	A	179585034	1	1	74	0	1	0	0	0	0	0	0	0	16861	841	29	3		3	TTN	2	179585034	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	181	179585034	63614339	265	80719											
TTN	7273	broad.mit.edu	37	chr2	179593857	179593857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcagaacttttcaaaacaGtagtggtattttctatcttc	7	7	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179593857	C	C	179593857	3	2	74	1	0	0	0	0	1	0	0	0	16861	1029	36	4	85813	4	TTN	2	179593857	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8823	179593857	63605516	266	80720											
CWC22	57703	broad.mit.edu	37	chr2	180857732	180857733	+	Intron	DEL	AC	-	-													acgcatgcatccatgtgtatAcacacacacacacgcgcaca					rs5836706		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180857733	-	-	180857732	6	5	74	0	1	1	0	1	0	0	0	0	4101	406	14	0		0	CWC22	2	180857732	Intron	DEL	AC	TCGA-17-Z045-01A-01W-0746-08	1263875	180857732	62341641	267	80721											
COL3A1	1281	broad.mit.edu	37	chr2	189851776	189851776	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcatatctatttgtctccTtgccacagaactattctccc	4	13	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189851776	A	A	189851776	1	1	74	0	1	0	0	0	0	0	0	0	3720	1624	56	5		5	COL3A1	2	189851776	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	8994044	189851776	53347597	268	80722											
COL3A1	1281	broad.mit.edu	37	chr2	189856414	189856414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtccaagaggggctcctgGtgagcgaggacggccaggac	19	10	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189856414	T	T	189856414	3	4	74	1	0	0	0	0	1	0	0	0	3720	1261	44	3	967	3	COL3A1	2	189856414	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4638	189856414	53342959	269	80723											
COL5A2	1290	broad.mit.edu	37	chr2	189917425	189917425	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatgaccaggaagcactaGgtaactagaattagctgtgc	10	8	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189917425	A	A	189917425	1	1	74	0	1	0	0	0	0	0	0	0	3729	1015	35	4		4	COL5A2	2	189917425	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	61011	189917425	53281948	270	80724											
STAT4	6775	broad.mit.edu	37	chr2	191923366	191923366	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcaaaattattctataaAataaaggccattcattttta	3	5	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191923366	C	C	191923366	1	2	74	0	1	0	0	0	0	0	0	0	15385	29	1	5		5	STAT4	2	191923366	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2005941	191923366	51276007	271	80725											
DNAH7	56171	broad.mit.edu	37	chr2	196825392	196825392	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaatcttccacctttgatCttactttttttgtcattgcc	4	10	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196825392	A	A	196825392	3	1	74	1	0	0	0	0	1	0	0	0	4646	913	32	3	9783	3	DNAH7	2	196825392	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4902026	196825392	46373981	272	80726											
DNAH7	56171	broad.mit.edu	37	chr2	196892698	196892698	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttaccaagatgtctttctCtatagcagaagcggtcggtt	10	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196892698	A	A	196892698	4	1	74	1	0	0	0	0	0	1	0	0	4646	922	32	3	11842	3	DNAH7	2	196892698	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	67306	196892698	46306675	273	80727											
DNAH7	56171	broad.mit.edu	37	chr2	196913077	196913077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctcatcatcctgctttaCactcaaatggaatgatggag	7	10	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196913077	A	A	196913077	3	1	74	1	0	0	0	0	1	0	0	0	4646	478	17	3	12129	3	DNAH7	2	196913077	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	20379	196913077	46286296	274	80728											
STK17B	9262	broad.mit.edu	37	chr2	197004484	197004484	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttctcccacaaatggtgaTgtgtgagttaacaacatata	7	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197004484	C	C	197004484	2	2	74	1	0	0	0	0	0	0	0	1	15409	1451	51	5		5	STK17B	2	197004484	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	91407	197004484	46194889	275	80729											
AOX1	316	broad.mit.edu	37	chr2	201473888	201473888	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgacagtaaactctggtAtgcatcccttgggtgactct	10	9	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201473888	G	G	201473888	1	3	74	0	1	0	0	0	0	0	0	0	731	464	16	5		5	AOX1	2	201473888	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	4469404	201473888	41725485	276	80730											
CASP10	843	broad.mit.edu	37	chr2	202073835	202073835	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcttgggttcacagtgcAtatacacaataatgtgacga	11	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202073835	G	G	202073835	3	3	74	1	0	0	0	0	1	0	0	0	2695	217	8	5	995	5	CASP10	2	202073835	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	599947	202073835	41125538	277	80731											
ALS2CR12	130540	broad.mit.edu	37	chr2	202211387	202211387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgatagccaggtgacacGttgatcacttcctaggcatc	10	10	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202211387	T	T	202211387	3	4	74	1	0	0	0	0	1	0	0	0	553	1136	40	3	1135	3	ALS2CR12	2	202211387	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	137552	202211387	40987986	278	80732											
ALS2CR12	130540	broad.mit.edu	37	chr2	202211399	202211399	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacacgttgatcacttcCtaggcatcaagggaaagtaa	11	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202211399	G	G	202211399	5	3	74	1	0	0	0	0	0	0	1	0	553	695	24	4	1147	4	ALS2CR12	2	202211399	Splice_Site	SNP	C	TCGA-17-Z045-01A-01W-0746-08	12	202211399	40987974	279	80733											
MPP4	58538	broad.mit.edu	37	chr2	202554925	202554925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaataaaatctccttacCtcataggataacacctgtgc	7	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202554925	A	A	202554925	3	1	74	1	0	0	0	0	1	0	0	0	9830	695	24	2	1710	2	MPP4	2	202554925	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	343526	202554925	40644448	280	80734											
CDK15	65061	broad.mit.edu	37	chr2	202689350	202689351	+	Intron	INS	-	C	C													cctaaatacccagaagaactINScccctttgtaagatttgtaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202689351	C	C	202689350	6	5	74	0	1	1	1	0	0	0	0	0	3161	1566	54	0		0	CDK15	2	202689350	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	134425	202689350	40510023	281	80735											
CDK15	65061	broad.mit.edu	37	chr2	202698557	202698557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatctccttatggatagtgTttcttccttccagcttttca	5	10	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202698557	A	A	202698557	1	1	74	0	1	0	0	0	0	0	0	0	3161	1740	60	5		5	CDK15	2	202698557	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	9207	202698557	40500816	282	80736											
NDUFS1	4719	broad.mit.edu	37	chr2	207011778	207011778	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttcctctgcctgttgttcCcaaatcatctactcctgcaa	4	14	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207011778	T	T	207011778	3	4	74	1	0	0	0	0	1	0	0	0	10386	632	22	4	1645	4	NDUFS1	2	207011778	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4313221	207011778	36187595	283	80737											
CPO	130749	broad.mit.edu	37	chr2	207827200	207827200	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagggccagtgtctgaaccAgagactaaagctgttgccag	12	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207827200	G	G	207827200	2	3	74	1	0	0	0	0	0	0	0	1	3852	175	7	5		5	CPO	2	207827200	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	815422	207827200	35372173	284	80738											
PIKFYVE	200576	broad.mit.edu	37	chr2	209142260	209142260	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacatttttattgttataGgatagtgacctgaaacaata	6	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209142260	T	T	209142260	5	4	74	1	0	0	0	0	0	0	1	0	12019	1014	35	2	455	2	PIKFYVE	2	209142260	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1315060	209142260	34057113	285	80739											
PTH2R	5746	broad.mit.edu	37	chr2	209308341	209308341	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattttacagtccactaaacAtgttaacttgcttttactta	3	8	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209308341	T	T	209308341	1	4	74	0	1	0	0	0	0	0	0	0	12866	232	8	5		5	PTH2R	2	209308341	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	166081	209308341	33891032	286	80740											
MAP2	4133	broad.mit.edu	37	chr2	210559290	210559290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagatttttacaaaaatgGtactgtcatggcacctgacc	7	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210559290	T	T	210559290	3	4	74	1	0	0	0	0	1	0	0	0	9327	1261	44	3	2410	3	MAP2	2	210559290	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1250949	210559290	32640083	287	80741											
CPS1	1373	broad.mit.edu	37	chr2	211481282	211481282	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaggtaaggcagtgctgctCtcattcatgccagacacctt	9	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211481282	A	A	211481282	1	1	74	0	1	0	0	0	0	0	0	0	3855	928	32	3		3	CPS1	2	211481282	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	921992	211481282	31718091	288	80742											
ATIC	471	broad.mit.edu	37	chr2	216209659	216209659	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgatatttaaacatccGtctgccttagatattggaca	7	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216209659	A	A	216209659	1	1	74	0	1	0	0	0	0	0	0	0	1109	1160	40	4		4	ATIC	2	216209659	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4728377	216209659	26989714	289	80743											
FN1	2335	broad.mit.edu	37	chr2	216273239	216273239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggatattttaagaattaTatattcatagggaaaagcga	9	2	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216273239	C	C	216273239	1	2	74	0	1	0	0	0	0	0	0	0	6020	1421	49	5		5	FN1	2	216273239	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	63580	216273239	26926134	290	80744											
MREG	55686	broad.mit.edu	37	chr2	216809781	216809781	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggaaccaagacatgtcgaTgggaaaaagcaatctaacaa	9	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216809781	A	A	216809781	1	1	74	0	1	0	0	0	0	0	0	0	9854	1479	51	5		5	MREG	2	216809781	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	536542	216809781	26389592	291	80745											
VIL1	7429	broad.mit.edu	37	chr2	219293043	219293043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatggaccggaaagcaccCgtatggagagactcagggta	15	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219293043	A	A	219293043	3	1	74	1	0	0	0	0	1	0	0	0	17291	652	23	1	568	1	VIL1	2	219293043	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2483262	219293043	23906330	292	80746											
CCDC108	255101	broad.mit.edu	37	chr2	219869057	219869057	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggattggcattaagtacagGctgtttttctggtccatgaa	11	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219869057	A	A	219869057	2	1	74	1	0	0	0	0	0	0	0	1	2769	1194	42	4		4	CCDC108	2	219869057	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	576014	219869057	23330316	293	80747											
CCDC108	255101	broad.mit.edu	37	chr2	219892828	219892828	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctagaaaggctacaccagtcGccctgactactaatggtgcc	9	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219892828	C	C	219892828	1	2	74	0	1	0	0	0	0	0	0	0	2769	1102	38	4		4	CCDC108	2	219892828	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	23771	219892828	23306545	294	80748											
ANKZF1	55139	broad.mit.edu	37	chr2	220100211	220100211	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagggactctcgggcccgGccaccttatactgttgcggc	12	15	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220100211	T	T	220100211	2	4	74	1	0	0	0	0	0	0	0	1	693	1190	42	3		3	ANKZF1	2	220100211	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	207383	220100211	23099162	295	80749											
DES	1674	broad.mit.edu	37	chr2	220288443	220288443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgggattacagctggGcccggccgatgggagggttc	18	9	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220288443	T	T	220288443	1	4	74	0	1	0	0	0	0	0	0	0	4489	1218	42	3		3	DES	2	220288443	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	188232	220288443	22910930	296	80750											
SPEG	10290	broad.mit.edu	37	chr2	220344491	220344491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccctcagactctgggccCactatttccacagatccggg	8	17	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220344491	A	A	220344491	1	1	74	0	1	0	0	0	0	0	0	0	15154	609	21	2		2	SPEG	2	220344491	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	56048	220344491	22854882	297	80751											
DOCK10	55619	broad.mit.edu	37	chr2	225639791	225639791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggcgtcacataggtcacCtggatgtaggcatatttggg	13	8	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225639791	A	A	225639791	3	1	74	1	0	0	0	0	1	0	0	0	4725	680	24	2	736	2	DOCK10	2	225639791	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5295300	225639791	17559582	298	80752											
SP140	11262	broad.mit.edu	37	chr2	231135280	231135280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattaatttctgtttcctcaCcaccacttgttattttccag	3	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231135280	A	A	231135280	1	1	74	0	1	0	0	0	0	0	0	0	15076	522	18	3		3	SP140	2	231135280	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5495489	231135280	12064093	299	80753											
COPS7B	64708	broad.mit.edu	37	chr2	232663663	232663663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaccgaactcagcagcagGtagaagcagaggtaaggaag	13	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232663663	T	T	232663663	3	4	74	1	0	0	0	0	1	0	0	0	3771	1261	44	3	643	3	COPS7B	2	232663663	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1528383	232663663	10535710	300	80754											
COPS7B	64708	broad.mit.edu	37	chr2	232665526	232665526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaaaacagtccattgacGtaataatcttttagaaaatc	4	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232665526	T	T	232665526	1	4	74	0	1	0	0	0	0	0	0	0	3771	1160	40	3		3	COPS7B	2	232665526	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1863	232665526	10533847	301	80755											
ECEL1	9427	broad.mit.edu	37	chr2	233349303	233349303	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctagcagccacttccaccGcaactgtgagaccaaggaca	9	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233349303	C	C	233349303	3	2	74	1	0	0	0	0	1	0	0	0	4931	1086	38	4	1316	4	ECEL1	2	233349303	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	683777	233349303	9850070	302	80756											
ATG16L1	55054	broad.mit.edu	37	chr2	234186221	234186221	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtcttgcaggatgcacAtgatggggaagtcaacgctg	14	8	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234186221	T	T	234186221	3	4	74	1	0	0	0	0	1	0	0	0	1095	217	8	5	1000	5	ATG16L1	2	234186221	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	836918	234186221	9013152	303	80757											
SPP2	6694	broad.mit.edu	37	chr2	234967446	234967446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcataaacttcagaaatgcAttgatcacactctgaaactt	4	9	4	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234967446	G	G	234967446	1	3	74	0	1	0	0	0	0	0	0	0	15205	232	8	5		5	SPP2	2	234967446	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	781225	234967446	8231927	304	80758											
COL6A3	1293	broad.mit.edu	37	chr2	238245034	238245034	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcggctggcttcacagaTggctgatttataatagtcac	11	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238245034	C	C	238245034	2	2	74	1	0	0	0	0	0	0	0	1	3733	1451	51	5		5	COL6A3	2	238245034	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3277588	238245034	4954339	305	80759											
COL6A3	1293	broad.mit.edu	37	chr2	238265934	238265934	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgttgggcagatcttatgGcactaagaattgtcacagag	11	7	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238265934	A	A	238265934	1	1	74	0	1	0	0	0	0	0	0	0	3733	1218	42	4		4	COL6A3	2	238265934	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	20900	238265934	4933439	306	80760											
PER2	8864	broad.mit.edu	37	chr2	239165481	239165481	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtggagttcttctgcactTagaaaaatttaagatggcaa	10	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239165481	A	A	239165481	1	1	74	0	1	0	0	0	0	0	0	0	11824	1769	61	5		5	PER2	2	239165481	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	899547	239165481	4033892	307	80761											
HDLBP	3069	broad.mit.edu	37	chr2	242192363	242192363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccaccgcaacagacagcCtcactcactgttggcaccgc	8	19	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242192363	A	A	242192363	1	1	74	0	1	0	0	0	0	0	0	0	7092	696	24	2		2	HDLBP	2	242192363	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3026882	242192363	1007010	308	80762											
BRPF1	7862	broad.mit.edu	37	chr3	9781178	9781178	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtctgcttcgccaacacGgtcttcctagagcctattga	10	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9781178	T	T	9781178	2	4	74	1	0	0	0	0	0	0	0	1	1529	1103	39	1		1	BRPF1	3	9781178	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08		9781178	188241252	309	80763											
TSEN2	80746	broad.mit.edu	37	chr3	12560566	12560566	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataactttaggagcctttAacgatagtgaagctctggaa	9	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12560566	G	G	12560566	2	3	74	1	0	0	0	0	0	0	0	1	16737	359	13	5		5	TSEN2	3	12560566	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2779388	12560566	185461864	310	80764											
WNT7A	7476	broad.mit.edu	37	chr3	13860878	13860878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtgcacgagcctgacaCgccgtggcacttacattcca	12	13	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13860878	A	A	13860878	3	1	74	1	0	0	0	0	1	0	0	0	17521	536	19	3	440	3	WNT7A	3	13860878	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1300312	13860878	184161552	311	80765											
SATB1	6304	broad.mit.edu	37	chr3	18427992	18427993	+	Frame_Shift_Del	DEL	TT	-	-													gtcctggtatattcggtctcTttcagcttccggtaactgca							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18427993	-	-	18427992	7	5	74	1	0	1	0	1	0	0	0	0	13965	1617	56	0	989	0	SATB1	3	18427992	Frame_Shift_Del	DEL	TT	TCGA-17-Z045-01A-01W-0746-08	4567114	18427992	179594438	312	80766											
KCNH8	131096	broad.mit.edu	37	chr3	19436595	19436595	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctgtctcttaccacaGgtgtctctcgtgcatcttct	7	14	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19436595	T	T	19436595	5	4	74	1	0	0	0	0	0	0	1	0	8108	1014	35	2	995	2	KCNH8	3	19436595	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1008603	19436595	178585835	313	80767											
KAT2B	8850	broad.mit.edu	37	chr3	20164180	20164180	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaaaagaggaaaatgactGattctcatgttctggaggag	13	4	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20164180	T	T	20164180	3	4	74	1	0	0	0	0	1	0	0	0	8052	1290	45	3	1331	3	KAT2B	3	20164180	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	727585	20164180	177858250	314	80768											
ARPP21	10777	broad.mit.edu	37	chr3	35730774	35730774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccaccatcattcctgacAgctccgtcctgctatttgtt	5	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35730774	T	T	35730774	1	4	74	0	1	0	0	0	0	0	0	0	982	203	7	5		5	ARPP21	3	35730774	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	15566594	35730774	162291656	315	80769											
ARPP21	10777	broad.mit.edu	37	chr3	35750586	35750586	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtagttgttttaattgcctCtttagtgcgctccttccaac	7	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35750586	A	A	35750586	1	1	74	0	1	0	0	0	0	0	0	0	982	928	32	3		3	ARPP21	3	35750586	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	19812	35750586	162271844	316	80770											
STAC	6769	broad.mit.edu	37	chr3	36513092	36513092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgggggtacaggtgttagGtaaatatagctgttccagat	13	4	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36513092	T	T	36513092	1	4	74	0	1	0	0	0	0	0	0	0	15357	1276	44	3		3	STAC	3	36513092	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	762506	36513092	161509338	317	80771											
NKTR	4820	broad.mit.edu	37	chr3	42680803	42680803	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagctctgctagcttggctAgtgctggagaaagtaccggg	15	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42680803	T	T	42680803	3	4	74	1	0	0	0	0	1	0	0	0	10543	420	15	5	3653	5	NKTR	3	42680803	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	6167711	42680803	155341627	318	80772											
USP4	7375	broad.mit.edu	37	chr3	49323555	49323555	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtttaagtagttttccatCagctgcaagtgaatttatgt	9	5	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49323555	G	G	49323555	3	3	74	1	0	0	0	0	1	0	0	0	17198	826	29	4	743	4	USP4	3	49323555	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6642752	49323555	148698875	319	80773											
IQCF1	132141	broad.mit.edu	37	chr3	51929313	51929313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggatcttggtggctaCcgtatctttgtcagagagct	13	9	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51929313	A	A	51929313	3	1	74	1	0	0	0	0	1	0	0	0	7877	507	18	3	410	3	IQCF1	3	51929313	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2605758	51929313	146093117	320	80774											
CADM2	253559	broad.mit.edu	37	chr3	86028354	86028354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactactatcatcccctcCcttaccactgcaacagtcac	2	20	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86028354	A	A	86028354	2	1	74	1	0	0	0	0	0	0	0	1	2593	610	22	2		2	CADM2	3	86028354	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	34099041	86028354	111994076	321	80775											
OR5AC2	81050	broad.mit.edu	37	chr3	97806267	97806267	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctataacccctaggatgcTggtcaatttcttagacaaga	7	10	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97806267	A	A	97806267	3	1	74	1	0	0	0	0	1	0	0	0	11235	1580	55	5	253	5	OR5AC2	3	97806267	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	11777913	97806267	100216163	322	80776											
MYH15	22989	broad.mit.edu	37	chr3	108216795	108216795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataatttgcaaattgtcctGtggtgcttgtggcctcactt	9	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108216795	T	T	108216795	1	4	74	0	1	0	0	0	0	0	0	0	10128	1392	48	3		3	MYH15	3	108216795	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	10410528	108216795	89805635	323	80777											
TRAT1	50852	broad.mit.edu	37	chr3	108572570	108572570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatttctcagacaaggatgGagatgagcaactacatgcaa	9	8	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108572570	A	A	108572570	3	1	74	1	0	0	0	0	1	0	0	0	16590	1174	41	4	429	4	TRAT1	3	108572570	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	355775	108572570	89449860	324	80778											
CD96	10225	broad.mit.edu	37	chr3	111296432	111296432	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaaaaagaattcagcagAgtatgattatttgcaggcaa	10	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111296432	G	G	111296432	1	3	74	0	1	0	0	0	0	0	0	0	3078	319	11	5		5	CD96	3	111296432	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2723862	111296432	86725998	325	80779											
CD96	10225	broad.mit.edu	37	chr3	111319568	111319568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccatgttcgtatctgtctGgcaggaatatatattactaa	7	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111319568	T	T	111319568	1	4	74	0	1	0	0	0	0	0	0	0	3078	1363	47	2		2	CD96	3	111319568	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	23136	111319568	86702862	326	80780											
TMPRSS7	344805	broad.mit.edu	37	chr3	111794299	111794299	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgcctcagtcatctccaggGagtggcttctttctgcagcc	11	13	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111794299	C	C	111794299	3	2	74	1	0	0	0	0	1	0	0	0	16375	1175	41	4	1583	4	TMPRSS7	3	111794299	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	474731	111794299	86228131	327	80781											
SLC9A10	285335	broad.mit.edu	37	chr3	111923162	111923162	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatggtgtctatttcaataAgtattacatgtaagatgcca	7	5	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111923162	C	C	111923162	3	2	74	1	0	0	0	0	1	0	0	0	14824	72	3	5	1510	5	SLC9A10	3	111923162	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	128863	111923162	86099268	328	80782											
CD200	4345	broad.mit.edu	37	chr3	112054784	112054784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatctcattgatctcaaaCcacagactctgaccaggaca	5	13	4	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112054784	A	A	112054784	1	1	74	0	1	0	0	0	0	0	0	0	3010	522	18	3		3	CD200	3	112054784	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	131622	112054784	85967646	329	80783											
BTLA	151888	broad.mit.edu	37	chr3	112190193	112190193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggtcgttctgaggcaCtttttacatctggaatgtta	12	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112190193	A	A	112190193	3	1	74	1	0	0	0	0	1	0	0	0	1568	565	20	3	468	3	BTLA	3	112190193	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	135409	112190193	85832237	330	80784											
BOC	91653	broad.mit.edu	37	chr3	113003248	113003248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccgtatactatggtgcCattgggaggactcccaggcc	12	13	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113003248	A	A	113003248	3	1	74	1	0	0	0	0	1	0	0	0	1487	594	21	2	2778	2	BOC	3	113003248	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	813055	113003248	85019182	331	80785											
IGSF11	152404	broad.mit.edu	37	chr3	118621691	118621691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctatgaacttttggattGttgctccagtatcgactgtt	8	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118621691	T	T	118621691	3	4	74	1	0	0	0	0	1	0	0	0	7668	1368	48	3	327	3	IGSF11	3	118621691	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5618443	118621691	79400739	332	80786											
ARHGAP31	57514	broad.mit.edu	37	chr3	119017763	119017763	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccattcacagcaaggtagtCaggaattgatctcgtgaagc	11	9	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119017763	G	G	119017763	1	3	74	0	1	0	0	0	0	0	0	0	882	841	29	4		4	ARHGAP31	3	119017763	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	396072	119017763	79004667	333	80787											
ARHGAP31	57514	broad.mit.edu	37	chr3	119128425	119128425	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggaatgcagcaaaggcctGtcccaggagccaggcgccca	14	13	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119128425	C	C	119128425	2	2	74	1	0	0	0	0	0	0	0	1	882	1364	48	4		4	ARHGAP31	3	119128425	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	110662	119128425	78894005	334	80788											
ARHGAP31	57514	broad.mit.edu	37	chr3	119133576	119133576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggcccaggtacagggcCttcagggtcaccagttggag	14	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119133576	A	A	119133576	3	1	74	1	0	0	0	0	1	0	0	0	882	681	24	2	2846	2	ARHGAP31	3	119133576	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5151	119133576	78888854	335	80789											
TMEM39A	55254	broad.mit.edu	37	chr3	119151022	119151022	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacactgccctcaataaggaTgagcagatttaacagcctta	8	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119151022	A	A	119151022	3	1	74	1	0	0	0	0	1	0	0	0	16284	1464	51	5	197	5	TMEM39A	3	119151022	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	17446	119151022	78871408	336	80790											
LRRC58	116064	broad.mit.edu	37	chr3	120067582	120067582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaccctccggcacacaCccgctcacctctgcaagttc	5	22	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120067582	A	A	120067582	1	1	74	0	1	0	0	0	0	0	0	0	9101	522	18	3		3	LRRC58	3	120067582	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	916560	120067582	77954848	337	80791											
FSTL1	11167	broad.mit.edu	37	chr3	120122145	120122145	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaactcttggaagctgAgtttccaatcagcattttca	8	8	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120122145	T	T	120122145	3	4	74	1	0	0	0	0	1	0	0	0	6137	304	11	5	304	5	FSTL1	3	120122145	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	54563	120122145	77900285	338	80792											
GOLGB1	2804	broad.mit.edu	37	chr3	121414164	121414164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcatactccattttgaCcctttcaagttcttccttca	4	12	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121414164	A	A	121414164	3	1	74	1	0	0	0	0	1	0	0	0	6629	507	18	3	4628	3	GOLGB1	3	121414164	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1292019	121414164	76608266	339	80793											
SLC15A2	6565	broad.mit.edu	37	chr3	121634527	121634527	+	Frame_Shift_Del	DEL	G	-	-													ggagttccaggactgctcatGgtaattgcacttggtaagtg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121634527	-	-	121634527	7	5	74	1	0	1	0	1	0	0	0	0	14512	1348	47	0	710	0	SLC15A2	3	121634527	Frame_Shift_Del	DEL	G	TCGA-17-Z045-01A-01W-0746-08	220363	121634527	76387903	340	80794											
CD86	942	broad.mit.edu	37	chr3	121828231	121828231	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatggaagaagaagaagCggcctcgcaactcttataaa	11	7	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121828231	A	A	121828231	2	1	74	1	0	0	0	0	0	0	0	1	3073	759	27	3		3	CD86	3	121828231	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	193704	121828231	76194199	341	80795											
PDIA5	10954	broad.mit.edu	37	chr3	122829679	122829679	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgaagtgctcactccccctCccctccccatccctaccctt	3	23	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122829679	T	T	122829679	1	4	74	0	1	0	0	0	0	0	0	0	11765	870	30	4		4	PDIA5	3	122829679	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1001448	122829679	75192751	342	80796											
KALRN	8997	broad.mit.edu	37	chr3	123858375	123858375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgctttgctgagaactGctgggcagcagtccctctct	10	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123858375	T	T	123858375	1	4	74	0	1	0	0	0	0	0	0	0	8045	1334	46	3		3	KALRN	3	123858375	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1028696	123858375	74164055	343	80797											
KALRN	8997	broad.mit.edu	37	chr3	124153095	124153095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacgcctcactccacccCctcccataccacgcctgggt	5	22	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124153095	A	A	124153095	1	1	74	0	1	0	0	0	0	0	0	0	8045	638	22	2		2	KALRN	3	124153095	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	294720	124153095	73869335	344	80798											
KALRN	8997	broad.mit.edu	37	chr3	124412633	124412633	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggattcaagcaattttctgTgtctttttgtttttcagatc	7	6	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124412633	G	G	124412633	1	3	74	0	1	0	0	0	0	0	0	0	8045	1711	59	5		5	KALRN	3	124412633	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	259538	124412633	73609797	345	80799											
CCDC37	348807	broad.mit.edu	37	chr3	126132862	126132862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggaaggcagtggggccCcagagacagagaccaccgcc	16	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126132862	A	A	126132862	1	1	74	0	1	0	0	0	0	0	0	0	2836	638	22	2		2	CCDC37	3	126132862	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1720229	126132862	71889568	346	80800											
CHCHD6	84303	broad.mit.edu	37	chr3	126633505	126633505	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagtctttggtaaccaattCtgtttttctccttgtagaat	6	8	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126633505	T	T	126633505	1	4	74	0	1	0	0	0	0	0	0	0	3351	928	32	4		4	CHCHD6	3	126633505	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	500643	126633505	71388925	347	80801											
COL6A6	131873	broad.mit.edu	37	chr3	130311878	130311878	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacatgcacgtgatgtactCtgttctaatcatatctatct	5	10	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130311878	T	T	130311878	1	4	74	0	1	0	0	0	0	0	0	0	3735	928	32	4		4	COL6A6	3	130311878	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3678373	130311878	67710552	348	80802											
ACAD11	84129	broad.mit.edu	37	chr3	132294556	132294556	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctcacaagtaatgttttTgttcaatgttagtgtagtgc	8	6	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132294556	C	C	132294556	1	2	74	0	1	0	0	0	0	0	0	0	109	1827	63	5		5	ACAD11	3	132294556	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1982678	132294556	65727874	349	80803											
NPHP3	27031	broad.mit.edu	37	chr3	132423271	132423271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaataaagatcttacagCggggtcacccaggcccaaag	10	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132423271	A	A	132423271	1	1	74	0	1	0	0	0	0	0	0	0	10675	783	27	3		3	NPHP3	3	132423271	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	128715	132423271	65599159	350	80804											
TF	7018	broad.mit.edu	37	chr3	133478197	133478197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcactccagccttcctagGgcagcgtccctgtcattgct	9	15	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133478197	T	T	133478197	1	4	74	0	1	0	0	0	0	0	0	0	15908	1247	43	2		2	TF	3	133478197	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1054926	133478197	64544233	351	80805											
TF	7018	broad.mit.edu	37	chr3	133497544	133497544	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccctggtttcactggcccAagtggtttgtgctaaccacg	11	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133497544	T	T	133497544	1	4	74	0	1	0	0	0	0	0	0	0	15908	145	5	5		5	TF	3	133497544	3'UTR	SNP	A	TCGA-17-Z045-01A-01W-0746-08	19347	133497544	64524886	352	80806											
KY	339855	broad.mit.edu	37	chr3	134327420	134327420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaagcgcagtctcaggCgggctcctggaggacagtgc	15	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134327420	A	A	134327420	1	1	74	0	1	0	0	0	0	0	0	0	8658	783	27	3		3	KY	3	134327420	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	829876	134327420	63695010	353	80807											
STAG1	10274	broad.mit.edu	37	chr3	136191385	136191385	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaacagaaaataagctGggacagatctaatataatgt	8	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136191385	A	A	136191385	1	1	74	0	1	0	0	0	0	0	0	0	15360	1363	47	4		4	STAG1	3	136191385	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1863965	136191385	61831045	354	80808											
ZBTB38	253461	broad.mit.edu	37	chr3	141163054	141163054	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctatgttgttcagaatccAcacagctctgaattaccaac	5	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141163054	T	T	141163054	2	4	74	1	0	0	0	0	0	0	0	1	17665	146	6	5		5	ZBTB38	3	141163054	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	4971669	141163054	56859376	355	80809											
GRK7	131890	broad.mit.edu	37	chr3	141521685	141521685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccctcatccactctctcCtgtgcttcctccttgtgcct	4	20	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141521685	T	T	141521685	1	4	74	0	1	0	0	0	0	0	0	0	6860	696	24	4		4	GRK7	3	141521685	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	358631	141521685	56500745	356	80810											
PLOD2	5352	broad.mit.edu	37	chr3	145794528	145794528	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactgatttataaccacttaCagttatagaaaaataataaa	3	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145794528	G	G	145794528	1	3	74	0	1	0	0	0	0	0	0	0	12197	493	17	4		4	PLOD2	3	145794528	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4272843	145794528	52227902	357	80811											
PLSCR4	57088	broad.mit.edu	37	chr3	145917718	145917718	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacgaagggccttagtgtcCgataggcattcctggtaaag	14	8	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145917718	T	T	145917718	3	4	74	1	0	0	0	0	1	0	0	0	12207	652	23	4	499	4	PLSCR4	3	145917718	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	123190	145917718	52104712	358	80812											
ZIC4	84107	broad.mit.edu	37	chr3	147113997	147113997	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagcgccaggaccgtgGggcgcagcgaggttcaccgt	16	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147113997	C	C	147113997	2	2	74	1	0	0	0	0	0	0	0	1	17807	1219	43	4		4	ZIC4	3	147113997	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1196279	147113997	50908433	359	80813											
DHX36	170506	broad.mit.edu	37	chr3	154027551	154027551	+	Frame_Shift_Del	DEL	C	-	-													gagtaacttgagtggttttgCcacaaccagtttcaccactt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154027551	-	-	154027551	7	5	74	1	0	1	0	1	0	0	0	0	4549	739	26	0	2406	0	DHX36	3	154027551	Frame_Shift_Del	DEL	C	TCGA-17-Z045-01A-01W-0746-08	6913554	154027551	43994879	360	80814											
DHX36	170506	broad.mit.edu	37	chr3	154042241	154042241	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccgtcagaaccagcaaCcgctggaaatggcgtccggg	12	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154042241	A	A	154042241	1	1	74	0	1	0	0	0	0	0	0	0	4549	522	18	3		3	DHX36	3	154042241	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	14690	154042241	43980189	361	80815											
MME	4311	broad.mit.edu	37	chr3	154834807	154834807	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaaataactaaagttacCtttaaattgtaataaaactt	3	5	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154834807	T	T	154834807	1	4	74	0	1	0	0	0	0	0	0	0	9738	696	24	4		4	MME	3	154834807	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	792566	154834807	43187623	362	80816											
MME	4311	broad.mit.edu	37	chr3	154862197	154862197	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttttattcagactttagAtgacctcacttggatggatg	9	6	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154862197	G	G	154862197	3	3	74	1	0	0	0	0	1	0	0	0	9738	333	12	5	1417	5	MME	3	154862197	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	27390	154862197	43160233	363	80817											
KCNAB1	7881	broad.mit.edu	37	chr3	156009765	156009765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggaccgacttctgagCaagcagagctccaccgcccc	12	15	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156009765	A	A	156009765	1	1	74	0	1	0	0	0	0	0	0	0	8079	709	25	3		3	KCNAB1	3	156009765	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1147568	156009765	42012665	364	80818											
LEKR1	389170	broad.mit.edu	37	chr3	156763436	156763436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggttagatcaggcgtgcCcattctcccccagccacatc	10	15	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156763436	A	A	156763436	3	1	74	1	0	0	0	0	1	0	0	0	8789	623	22	2	2022	2	LEKR1	3	156763436	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	753671	156763436	41258994	365	80819											
SI	6476	broad.mit.edu	37	chr3	164709171	164709171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttgagctggctcttgaCatggtaggatgtgaccacca	12	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164709171	A	A	164709171	3	1	74	1	0	0	0	0	1	0	0	0	14410	478	17	3	425	3	SI	3	164709171	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	7945735	164709171	33313259	366	80820											
BCHE	590	broad.mit.edu	37	chr3	165547419	165547419	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagacaaattcaatttcaTagccatgcatcactcccatc	3	13	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165547419	C	C	165547419	3	2	74	1	0	0	0	0	1	0	0	0	1363	1406	49	5	417	5	BCHE	3	165547419	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	838248	165547419	32475011	367	80821											
ZBBX	79740	broad.mit.edu	37	chr3	167051743	167051743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tataaactgatgggcaacatCcaatacattgaataatattt	5	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167051743	A	A	167051743	3	1	74	1	0	0	0	0	1	0	0	0	17643	855	30	3	1891	3	ZBBX	3	167051743	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1504324	167051743	30970687	368	80822											
TNIK	23043	broad.mit.edu	37	chr3	170843705	170843705	+	Frame_Shift_Del	DEL	G	-	-													ccccagtaaatattacctttGgtggaatgtcttcttcctgt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170843705	-	-	170843705	7	5	74	1	0	1	0	1	0	0	0	0	16436	1348	47	0	2141	0	TNIK	3	170843705	Frame_Shift_Del	DEL	G	TCGA-17-Z045-01A-01W-0746-08	3791962	170843705	27178725	369	80823											
CCDC39	339829	broad.mit.edu	37	chr3	180381730	180381730	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcgctcttcatactcacgTaactcatcttgcaagcttgc	5	13	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180381730	G	G	180381730	3	3	74	1	0	0	0	0	1	0	0	0	2838	1635	57	5	2766	5	CCDC39	3	180381730	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	9538025	180381730	17640700	370	80824											
FXR1	8087	broad.mit.edu	37	chr3	180651295	180651295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagggagtggggaggtttGgttgtttgatcataagtcta	15	2	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180651295	T	T	180651295	1	4	74	0	1	0	0	0	0	0	0	0	6175	1363	47	2		2	FXR1	3	180651295	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	269565	180651295	17371135	371	80825											
HTR3C	170572	broad.mit.edu	37	chr3	183773141	183773141	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatcattcctgtggatggaTttggtaaggcagattcaact	10	7	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183773141	A	A	183773141	3	1	74	1	0	0	0	0	1	0	0	0	7516	1490	52	5	286	5	HTR3C	3	183773141	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3121846	183773141	14249289	372	80826											
AP2M1	1173	broad.mit.edu	37	chr3	183898399	183898399	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgcctcccttgctgcttCatgtgggcacctcgttggcc	10	15	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183898399	T	T	183898399	1	4	74	0	1	0	0	0	0	0	0	0	744	841	29	4		4	AP2M1	3	183898399	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	125258	183898399	14124031	373	80827											
FAM131A	131408	broad.mit.edu	37	chr3	184059277	184059277	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggtgctgggaaagtggagGattagctgaagttttgcttc	16	4	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184059277	C	C	184059277	1	2	74	0	1	0	0	0	0	0	0	0	5485	1189	41	4		4	FAM131A	3	184059277	5'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	160878	184059277	13963153	374	80828											
EHHADH	1962	broad.mit.edu	37	chr3	184910477	184910477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacctgtcttctggccaaatCgtcctaattcacagagcaca	6	13	3	1	rs151323332		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184910477	A	A	184910477	3	1	74	1	0	0	0	0	1	0	0	0	5022	884	31	3	466	3	EHHADH	3	184910477	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	851200	184910477	13111953	375	80829											
TRA2B	6434	broad.mit.edu	37	chr3	185655424	185655424	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgggggcctccctccttcaCgaccaaaggcactaaggcac	10	17	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185655424	G	G	185655424	1	3	74	0	1	0	0	0	0	0	0	0	16558	551	19	4		4	TRA2B	3	185655424	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	744947	185655424	12367006	376	80830											
AHSG	197	broad.mit.edu	37	chr3	186331122	186331122	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaccttgaaccagattgaTgaagtaaaggtgtggcctca	10	9	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186331122	C	C	186331122	2	2	74	1	0	0	0	0	0	0	0	1	420	1461	51	5		5	AHSG	3	186331122	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	675698	186331122	11691308	377	80831											
TP63	8626	broad.mit.edu	37	chr3	189448506	189448506	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcacagttggtgaggaGgaggtccctccaggcctgct	14	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189448506	A	A	189448506	1	1	74	0	1	0	0	0	0	0	0	0	16516	1015	35	4		4	TP63	3	189448506	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3117384	189448506	8573924	378	80832											
APOD	347	broad.mit.edu	37	chr3	195306015	195306015	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccacctgctctcgtgCgtcccgggatcatcccaaac	7	19	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	195306015	G	G	195306015	1	3	74	0	1	0	0	0	0	0	0	0	803	783	27	4		4	APOD	3	195306015	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5857509	195306015	2716415	379	80833											
MUC20	200958	broad.mit.edu	37	chr3	195453055	195453055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctggtcacagttagcagGaatccccttgaagaaacctc	9	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195453055	T	T	195453055	3	4	74	1	0	0	0	0	1	0	0	0	10070	1165	41	3	1078	3	MUC20	3	195453055	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	147040	195453055	2569375	380	80834											
C3orf43	255798	broad.mit.edu	37	chr3	196242059	196242059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctccttcaaggatatcaGggttgtggtttcattgttca	10	8	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196242059	T	T	196242059	3	4	74	1	0	0	0	0	1	0	0	0	2252	991	35	2	634	2	C3orf43	3	196242059	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	789004	196242059	1780371	381	80835											
KIAA0226	9711	broad.mit.edu	37	chr3	197402403	197402403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctggggaggaaaaacaCagatggcaaaatgaggagcg	16	5	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197402403	A	A	197402403	1	1	74	0	1	0	0	0	0	0	0	0	8232	493	17	3		3	KIAA0226	3	197402403	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1160344	197402403	620027	382	80836											
LMLN	89782	broad.mit.edu	37	chr3	197703313	197703313	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaaatcaagaggatttccTatagaacccaaattctttct	4	11	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197703313	C	C	197703313	1	2	74	0	1	0	0	0	0	0	0	0	8921	1537	53	5		5	LMLN	3	197703313	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	300910	197703313	319117	383	80837											
ZNF595	152687	broad.mit.edu	37	chr4	53195	53195	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagagaggaggggttggCttccgggatctggcgcggcg	20	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53195	A	A	53195	1	1	74	0	1	0	0	0	0	0	0	0	18152	812	28	3		3	ZNF595	4	53195	5'Flank	SNP	C	TCGA-17-Z045-01A-01W-0746-08		53195	191101081	384	80838											
PIGG	54872	broad.mit.edu	37	chr4	527748	527748	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggccagccacttagtgcacTtcctgagctcagaaacacgc	10	14	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	527748	C	C	527748	3	2	74	1	0	0	0	0	1	0	0	0	11983	1609	56	5	2759	5	PIGG	4	527748	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	474553	527748	190626528	385	80839											
PPP2R2C	5522	broad.mit.edu	37	chr4	6377505	6377505	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctaaaatcctcaggtgtaAtaaagaggcgtgtgcctgct	10	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6377505	T	T	6377505	1	4	74	0	1	0	0	0	0	0	0	0	12487	116	4	5		5	PPP2R2C	4	6377505	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5849757	6377505	184776771	386	80840											
PPP2R2C	5522	broad.mit.edu	37	chr4	6384119	6384119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccctgtagccacagagaGgacactccacagggttccct	10	15	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6384119	T	T	6384119	1	4	74	0	1	0	0	0	0	0	0	0	12487	1015	35	2		2	PPP2R2C	4	6384119	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6614	6384119	184770157	387	80841											
SORCS2	57537	broad.mit.edu	37	chr4	7650371	7650371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggtctactgagggcgGgcggggagtgagggggctgc	23	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7650371	T	T	7650371	1	4	74	0	1	0	0	0	0	0	0	0	15045	1247	43	2		2	SORCS2	4	7650371	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1266252	7650371	183503905	388	80842											
GPR78	27201	broad.mit.edu	37	chr4	8588829	8588829	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaacgcccagtggggcatCctcagcaagtgcctgaccta	12	13	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8588829	A	A	8588829	2	1	74	1	0	0	0	0	0	0	0	1	6775	845	30	3		3	GPR78	4	8588829	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	938458	8588829	182565447	389	80843											
KCNIP4	80333	broad.mit.edu	37	chr4	21922882	21922883	+	Intron	DNP	TA	AT	AT													tcttctccatctatgacattTactcttggtgcttttgctgt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	21922883	AT	AT	21922882	1	1	74	0	1	0	0	0	0	0	0	0	8112	1769	61	5		5	KCNIP4	4	21922882	Intron	DNP	TA	TCGA-17-Z045-01A-01W-0746-08	13334053	21922882	169231394	390	80844											
PPARGC1A	10891	broad.mit.edu	37	chr4	23803407	23803408	+	Frame_Shift_Ins	INS	-	A	A													cgtccacaaaagtacagctcINSaaagtcagtttcgtttgacc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23803408	A	A	23803407	7	5	74	1	0	1	1	0	0	0	0	0	12396	835	29	0	165	0	PPARGC1A	4	23803407	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	1880525	23803407	167350869	391	80845											
STIM2	57620	broad.mit.edu	37	chr4	27019510	27019510	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacaccacactccttgccttCccctgatccagatatcctct	3	19	1	2	rs144093498		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27019510	T	T	27019510	3	4	74	1	0	0	0	0	1	0	0	0	15402	855	30	4	1737	4	STIM2	4	27019510	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3216103	27019510	164134766	392	80846											
PDS5A	23244	broad.mit.edu	37	chr4	39878841	39878841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattaaaaaagaattacttcCcgcaaaagaaaaaaaaaatt	3	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39878841	A	A	39878841	1	1	74	0	1	0	0	0	0	0	0	0	11785	638	22	2		2	PDS5A	4	39878841	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	12859331	39878841	151275435	393	80847											
N4BP2	55728	broad.mit.edu	37	chr4	40104598	40104598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttccaaggaaaccatgGctttgtagctcctgttgtaa	8	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40104598	T	T	40104598	3	4	74	1	0	0	0	0	1	0	0	0	10204	1203	42	3	1139	3	N4BP2	4	40104598	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	225757	40104598	151049678	394	80848											
CWH43	80157	broad.mit.edu	37	chr4	48996521	48996521	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgtctcatctcctcttccGaagtaagcttcttgaagcca	6	13	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48996521	T	T	48996521	1	4	74	0	1	0	0	0	0	0	0	0	4106	1073	37	3		3	CWH43	4	48996521	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8891923	48996521	142157755	395	80849											
CWH43	80157	broad.mit.edu	37	chr4	49034404	49034404	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgacacagtgagacatgctAtcagatgaaatgatctgaca	10	7	2	6			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49034404	T	T	49034404	1	4	74	0	1	0	0	0	0	0	0	0	4106	464	16	5		5	CWH43	4	49034404	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	37883	49034404	142119872	396	80850											
CWH43	80157	broad.mit.edu	37	chr4	49039987	49039987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatagtctttggcaacttagGtacctaaggctttttaaagt	9	6	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49039987	T	T	49039987	1	4	74	0	1	0	0	0	0	0	0	0	4106	1276	44	3		3	CWH43	4	49039987	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5583	49039987	142114289	397	80851											
SRD5A3	79644	broad.mit.edu	37	chr4	56236014	56236014	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggagtggtcattcactGtaaccacaggatcccatttg	9	10	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56236014	C	C	56236014	3	2	74	1	0	0	0	0	1	0	0	0	15258	1377	48	4	731	4	SRD5A3	4	56236014	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	7196027	56236014	134918262	398	80852											
KIAA1211	57482	broad.mit.edu	37	chr4	57182333	57182333	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccgcctgcagcggggagcGctcgtggagagaaagagatg	19	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57182333	C	C	57182333	3	2	74	1	0	0	0	0	1	0	0	0	8285	1087	38	4	2683	4	KIAA1211	4	57182333	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	946319	57182333	133971943	399	80853											
LPHN3	23284	broad.mit.edu	37	chr4	62641411	62641411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctcatcacagttggatGcaagcacacaaaggtgggct	12	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62641411	T	T	62641411	1	4	74	0	1	0	0	0	0	0	0	0	9004	1334	46	3		3	LPHN3	4	62641411	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5459078	62641411	128512865	400	80854											
LPHN3	23284	broad.mit.edu	37	chr4	62910273	62910273	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcactcaacagaggtaatTagaaataatttttcatattt	5	6	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62910273	C	C	62910273	1	2	74	0	1	0	0	0	0	0	0	0	9004	1769	61	5		5	LPHN3	4	62910273	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	268862	62910273	128244003	401	80855											
LPHN3	23284	broad.mit.edu	37	chr4	62933897	62933897	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtttagagccctacagagaGacaagtatgggagtaaagct	12	7	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62933897	T	T	62933897	1	4	74	0	1	0	0	0	0	0	0	0	9004	957	33	3		3	LPHN3	4	62933897	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	23624	62933897	128220379	402	80856											
EPHA5	2044	broad.mit.edu	37	chr4	66197760	66197760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaatctctgtataccggCccatcttgattgcctctagc	7	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66197760	A	A	66197760	3	1	74	1	0	0	0	0	1	0	0	0	5212	739	26	3	182	3	EPHA5	4	66197760	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3263863	66197760	124956516	403	80857											
EPHA5	2044	broad.mit.edu	37	chr4	66233081	66233081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatttgcttactgtgccCattatgaaaatgcatctttt	5	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66233081	A	A	66233081	3	1	74	1	0	0	0	0	1	0	0	0	5212	594	21	2	1231	2	EPHA5	4	66233081	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	35321	66233081	124921195	404	80858											
SULT1B1	27284	broad.mit.edu	37	chr4	70596167	70596167	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaactaatccttagctcatGataattcataagaaagtacg	6	7	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70596167	A	A	70596167	1	1	74	0	1	0	0	0	0	0	0	0	15494	1305	45	4		4	SULT1B1	4	70596167	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4363086	70596167	120558109	405	80859											
SULT1B1	27284	broad.mit.edu	37	chr4	70615401	70615401	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtgggtaaagggatagGgccatactaaaaaactgaca	13	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70615401	A	A	70615401	1	1	74	0	1	0	0	0	0	0	0	0	15494	1247	43	4		4	SULT1B1	4	70615401	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	19234	70615401	120538875	406	80860											
MUC7	4589	broad.mit.edu	37	chr4	71346782	71346783	+	Frame_Shift_Ins	INS	-	A	A													tcaaccctaccttagtggctINSacaacccaaattccatctgt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71346783	A	A	71346782	7	5	74	1	0	1	1	0	0	0	0	0	10075	1509	53	0	327	0	MUC7	4	71346782	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	731381	71346782	119807494	407	80861											
AMBN	258	broad.mit.edu	37	chr4	71471904	71471904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtttttttttccagggCgggagagaagacccaatggc	13	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71471904	A	A	71471904	2	1	74	1	0	0	0	0	0	0	0	1	563	755	27	3		3	AMBN	4	71471904	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	125122	71471904	119682372	408	80862											
CCDC158	339965	broad.mit.edu	37	chr4	77247165	77247165	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtttttcacagatggaCttgctaaaagtttgcaagaa	9	6	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77247165	G	G	77247165	3	3	74	1	0	0	0	0	1	0	0	0	2817	565	20	4	351	4	CCDC158	4	77247165	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5775261	77247165	113907111	409	80863											
CCDC158	339965	broad.mit.edu	37	chr4	77288616	77288616	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttctctgtcatctgcagtTtgagggcctcacattctgtc	8	13	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77288616	A	A	77288616	3	1	74	1	0	0	0	0	1	0	0	0	2817	1841	64	5	1736	5	CCDC158	4	77288616	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	41451	77288616	113865660	410	80864											
FRAS1	80144	broad.mit.edu	37	chr4	79199936	79199936	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccgaagatgatttcaaatTaattcaaaattaatctaatg	4	5	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79199936	G	G	79199936	1	3	74	0	1	0	0	0	0	0	0	0	6102	1769	61	5		5	FRAS1	4	79199936	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1911320	79199936	111954340	411	80865											
FRAS1	80144	broad.mit.edu	37	chr4	79240282	79240282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataaagcaggagaccaacGtgcaaaagagtagcccccac	10	11	0	2	rs138032191	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79240282	T	T	79240282	1	4	74	0	1	0	0	0	0	0	0	0	6102	1160	40	3		3	FRAS1	4	79240282	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	40346	79240282	111913994	412	80866											
C4orf22	255119	broad.mit.edu	37	chr4	81582215	81582215	+	Intron	DEL	C	-	-													gggagccgggcacggtggctCacacctgtaatcccagcact					rs75426200		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81582215	-	-	81582215	6	5	74	0	1	1	0	1	0	0	0	0	2278	841	29	0		0	C4orf22	4	81582215	Intron	DEL	C	TCGA-17-Z045-01A-01W-0746-08	2341933	81582215	109572061	413	80867											
PRKG2	5593	broad.mit.edu	37	chr4	82031530	82031530	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacgctcttaaagtatataCactttatcactagttaggtt	5	7	2	0	rs75137576	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82031530	G	G	82031530	1	3	74	0	1	0	0	0	0	0	0	0	12629	493	17	4		4	PRKG2	4	82031530	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	449315	82031530	109122746	414	80868											
WDFY3	23001	broad.mit.edu	37	chr4	85605170	85605170	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcatctccgacatgcagcAgcagatgatctgctggctcc	10	13	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85605170	C	C	85605170	3	2	74	1	0	0	0	0	1	0	0	0	17397	188	7	5	952	5	WDFY3	4	85605170	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3573640	85605170	105549106	415	80869											
C4orf36	132989	broad.mit.edu	37	chr4	87812707	87812707	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgatttcgttacatagGtgcctgatggaatgtcacag	12	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87812707	T	T	87812707	1	4	74	0	1	0	0	0	0	0	0	0	2289	1276	44	3		3	C4orf36	4	87812707	5'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2207537	87812707	103341569	416	80870											
AFF1	4299	broad.mit.edu	37	chr4	87967859	87967859	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttttcagacagcaaaaggtGatgagctgtctagtcgaata	10	6	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87967859	T	T	87967859	3	4	74	1	0	0	0	0	1	0	0	0	356	1290	45	3	203	3	AFF1	4	87967859	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	155152	87967859	103186417	417	80871											
IBSP	3381	broad.mit.edu	37	chr4	88732481	88732481	+	Intron	SNP	T	C	C													aattttacatttttcacagcTagatttgggttctttcaaac							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88732481	C	C	88732481	1	2	74	0	1	0	0	0	0	0	0	0	7545	1537	53	5		5	IBSP	4	88732481	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	764622	88732481	102421795	418	80872	367	2									
IBSP	3381	broad.mit.edu	37	chr4	88732483	88732483	+	Intron	SNP	G	A	A													ttttacatttttcacagctaGatttgggttctttcaaacgt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88732483	A	A	88732483	1	1	74	0	1	0	0	0	0	0	0	0	7545	957	33	4		4	IBSP	4	88732483	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2	88732483	102421793	419	80873	367	2									
ABCG2	9429	broad.mit.edu	37	chr4	89020661	89020661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaagccacagggcaggcTagacttgtctgttacagacc	11	10	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89020661	A	A	89020661	1	1	74	0	1	0	0	0	0	0	0	0	69	1537	53	5		5	ABCG2	4	89020661	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	288178	89020661	102133615	420	80874											
MMRN1	22915	broad.mit.edu	37	chr4	90816172	90816172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctagtttatggagtggggGcattgggcttaacaacagta	13	5	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90816172	T	T	90816172	3	4	74	1	0	0	0	0	1	0	0	0	9764	1203	42	3	52	3	MMRN1	4	90816172	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1795511	90816172	100338104	421	80875											
GRID2	2895	broad.mit.edu	37	chr4	94376988	94376988	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctatgggcttgcattgCtggcacagtccttctggtgg	12	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94376988	T	T	94376988	3	4	74	1	0	0	0	0	1	0	0	0	6838	797	28	4	1763	4	GRID2	4	94376988	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3560816	94376988	96777288	422	80876											
GRID2	2895	broad.mit.edu	37	chr4	94436366	94436366	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctctcccaataatcaaGgtctctccaggacctttcca	4	15	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94436366	T	T	94436366	5	4	74	1	0	0	0	0	0	0	1	0	6838	1014	35	2	2047	2	GRID2	4	94436366	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	59378	94436366	96717910	423	80877											
GRID2	2895	broad.mit.edu	37	chr4	94690559	94690559	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcatagccatgctggagacGtggtggaacaagaggaaagg	15	6	1	2	rs151216204	byFrequency	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94690559	C	C	94690559	2	2	74	1	0	0	0	0	0	0	0	1	6838	1132	40	4		4	GRID2	4	94690559	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	254193	94690559	96463717	424	80878											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99313231	99313231	+	Frame_Shift_Del	DEL	G	-	-													ttggtaatttagcagaacttGgtaagtcttagtcatgaacc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99313231	-	-	99313231	7	5	74	1	0	1	0	1	0	0	0	0	13147	1362	47	0	662	0	RAP1GDS1	4	99313231	Frame_Shift_Del	DEL	G	TCGA-17-Z045-01A-01W-0746-08	4622672	99313231	91841045	425	80879											
TACR3	6870	broad.mit.edu	37	chr4	104577477	104577477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaatgggaaacagtacacCagtataatgacgataatatg	9	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104577477	A	A	104577477	2	1	74	1	0	0	0	0	0	0	0	1	15626	581	21	2		2	TACR3	4	104577477	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5264246	104577477	86576799	426	80880											
TET2	54790	broad.mit.edu	37	chr4	106180775	106180775	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtcttttgatttttcaGgagaacttgcgcctgtcagg	11	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106180775	T	T	106180775	5	4	74	1	0	0	0	0	0	0	1	0	15892	1014	35	2	3910	2	TET2	4	106180775	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1603298	106180775	84973501	427	80881											
GSTCD	79807	broad.mit.edu	37	chr4	106638996	106638996	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatgttgaaatacagattAtttcaaggcaggagctccca	10	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106638996	T	T	106638996	3	4	74	1	0	0	0	0	1	0	0	0	6901	449	16	5	228	5	GSTCD	4	106638996	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	458221	106638996	84515280	428	80882											
DKK2	27123	broad.mit.edu	37	chr4	108124804	108124804	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaggataccactttgcacgGactttttcaaatgatgcagg	9	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108124804	T	T	108124804	1	4	74	0	1	0	0	0	0	0	0	0	4585	1189	41	3		3	DKK2	4	108124804	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1485808	108124804	83029472	429	80883											
AGXT2L1	64850	broad.mit.edu	37	chr4	109670458	109670458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttggttgttaccacaCatgccaccgggtggccgttg	11	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109670458	A	A	109670458	3	1	74	1	0	0	0	0	1	0	0	0	406	478	17	3	660	3	AGXT2L1	4	109670458	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1545654	109670458	81483818	430	80884											
COL25A1	84570	broad.mit.edu	37	chr4	109734975	109734975	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcaggaagaagcagccCtatgtaaacatatctcagac	9	11	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109734975	A	A	109734975	1	1	74	0	1	0	0	0	0	0	0	0	3716	696	24	2		2	COL25A1	4	109734975	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	64517	109734975	81419301	431	80885											
EGF	1950	broad.mit.edu	37	chr4	110882011	110882011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaatgtattgtgctgttGtcattgtgcagatgttaatg	11	3	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110882011	T	T	110882011	1	4	74	0	1	0	0	0	0	0	0	0	5002	1392	48	3		3	EGF	4	110882011	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1147036	110882011	80272265	432	80886											
C4orf21	55345	broad.mit.edu	37	chr4	113524814	113524814	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaccattacaccactagTagctgatccttttacttgat	5	11	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113524814	A	A	113524814	3	1	74	1	0	0	0	0	1	0	0	0	2277	1638	57	5	3548	5	C4orf21	4	113524814	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2642803	113524814	77629462	433	80887											
ANK2	287	broad.mit.edu	37	chr4	114262855	114262855	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaataggttctggctgaTagattgtcgacagatccagg	11	6	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114262855	C	C	114262855	3	2	74	1	0	0	0	0	1	0	0	0	621	1406	49	5	4100	5	ANK2	4	114262855	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	738041	114262855	76891421	434	80888											
NDST4	64579	broad.mit.edu	37	chr4	115769463	115769463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgatgattgaaggatgCataagaagaaataaataaag	10	2	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115769463	A	A	115769463	3	1	74	1	0	0	0	0	1	0	0	0	10353	710	25	3	794	3	NDST4	4	115769463	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1506608	115769463	75384813	435	80889											
NDST4	64579	broad.mit.edu	37	chr4	115997623	115997623	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggttaacaaaacagtccttTagagctagattattgaaaag	9	5	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115997623	C	C	115997623	2	2	74	1	0	0	0	0	0	0	0	1	10353	1741	61	5		5	NDST4	4	115997623	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	228160	115997623	75156653	436	80890											
MYOZ2	51778	broad.mit.edu	37	chr4	120107369	120107369	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctatgaaaagaaagttgtaTgtgccacataaaactctgaa	7	7	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120107369	A	A	120107369	1	1	74	0	1	0	0	0	0	0	0	0	10190	1479	51	5		5	MYOZ2	4	120107369	3'UTR	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4109746	120107369	71046907	437	80891											
QRFPR	84109	broad.mit.edu	37	chr4	122290832	122290832	+	Intron	DEL	C	-	-													gggatctcagtccaaagaggCcccacttatctgacaagttt					rs117168364	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122290832	-	-	122290832	6	5	74	0	1	1	0	1	0	0	0	0	12986	754	26	0		0	QRFPR	4	122290832	Intron	DEL	C	TCGA-17-Z045-01A-01W-0746-08	2183463	122290832	68863444	438	80892											
TMEM155	132332	broad.mit.edu	37	chr4	122681245	122681245	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactctgtcagaggggagCagtgctgcttggagctttga	14	9	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122681245	A	A	122681245	1	1	74	0	1	0	0	0	0	0	0	0	16195	725	25	3		3	TMEM155	4	122681245	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	390413	122681245	68473031	439	80893											
LARP1B	55132	broad.mit.edu	37	chr4	128998985	128998985	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaaaagccacaaaatAgaaaagaaaaagaagagaag	8	3	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128998985	G	G	128998985	3	3	74	1	0	0	0	0	1	0	0	0	8701	412	15	5	91	5	LARP1B	4	128998985	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	6317740	128998985	62155291	440	80894											
PHF17	79960	broad.mit.edu	37	chr4	129773557	129773557	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttaaagaaatgtgccctAtagactttatttttccctag	6	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129773557	G	G	129773557	1	3	74	0	1	0	0	0	0	0	0	0	11923	464	16	5		5	PHF17	4	129773557	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	774572	129773557	61380719	441	80895											
GYPA	2993	broad.mit.edu	37	chr4	145035837	145035838	+	Intron	DNP	CC	AA	AA													aggaactgcaaatattaacaCcaacctggattttctatttc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	145035838	AA	AA	145035837	1	1	74	0	1	0	0	0	0	0	0	0	6973	522	18	3		3	GYPA	4	145035837	Intron	DNP	CC	TCGA-17-Z045-01A-01W-0746-08	15262280	145035837	46118439	442	80896											
C4orf51	646603	broad.mit.edu	37	chr4	146617823	146617823	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgggcccagccctttTgccagggttgctgtgtttct	12	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146617823	G	G	146617823	1	3	74	0	1	0	0	0	0	0	0	0	2300	1827	63	5		5	C4orf51	4	146617823	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1581986	146617823	44536453	443	80897											
FGA	2243	broad.mit.edu	37	chr4	155507252	155507252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaccttctctttaccagtCctgagctctttatctccttt	5	13	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155507252	A	A	155507252	3	1	74	1	0	0	0	0	1	0	0	0	5887	854	30	3	1323	3	FGA	4	155507252	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8889429	155507252	35647024	444	80898											
RXFP1	59350	broad.mit.edu	37	chr4	159548022	159548022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaatttgacttttatttCctgcagtaatttaactgttt	5	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159548022	A	A	159548022	3	1	74	1	0	0	0	0	1	0	0	0	13870	855	30	3	844	3	RXFP1	4	159548022	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4040770	159548022	31606254	445	80899											
RAPGEF2	9693	broad.mit.edu	37	chr4	160277144	160277144	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggcccttcagagatcgcgGatggtcgcacgatcctccga	13	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160277144	T	T	160277144	2	4	74	1	0	0	0	0	0	0	0	1	13152	1161	41	3		3	RAPGEF2	4	160277144	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	729122	160277144	30877132	446	80900											
NPY1R	4886	broad.mit.edu	37	chr4	164247263	164247263	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcatgtctattatttggtctCcaccctcgagggttgattat	9	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164247263	G	G	164247263	3	3	74	1	0	0	0	0	1	0	0	0	10703	856	30	4	718	4	NPY1R	4	164247263	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3970119	164247263	26907013	447	80901											
DDX60	55601	broad.mit.edu	37	chr4	169204672	169204672	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcacgatgattttcgaagaGactgtttctaatgaattccc	8	8	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169204672	C	C	169204672	2	2	74	1	0	0	0	0	0	0	0	1	4411	929	33	4		4	DDX60	4	169204672	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4957409	169204672	21949604	448	80902											
MFAP3L	9848	broad.mit.edu	37	chr4	170926850	170926850	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatcaaggcactgttccctTccttgactatgatatggtca	7	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170926850	A	A	170926850	3	1	74	1	0	0	0	0	1	0	0	0	9609	1783	62	5	1058	5	MFAP3L	4	170926850	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1722178	170926850	20227426	449	80903											
NEIL3	55247	broad.mit.edu	37	chr4	178262518	178262518	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgacatatgtacaaacatAtgtaaatttttagcagatga	6	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178262518	C	C	178262518	1	2	74	0	1	0	0	0	0	0	0	0	10415	464	16	5		5	NEIL3	4	178262518	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	7335668	178262518	12891758	450	80904											
ODZ3	55714	broad.mit.edu	37	chr4	183675671	183675671	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctggacggcccatgcactGtcaggttcccggagtggaat	14	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183675671	C	C	183675671	3	2	74	1	0	0	0	0	1	0	0	0	10931	1377	48	4	4233	4	ODZ3	4	183675671	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5413153	183675671	7478605	451	80905											
C4orf41	60684	broad.mit.edu	37	chr4	184587597	184587597	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtatgatcttctgtgtcAgggcagctatgtcagtttgc	12	8	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184587597	T	T	184587597	1	4	74	0	1	0	0	0	0	0	0	0	2293	203	7	5		5	C4orf41	4	184587597	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	911926	184587597	6566679	452	80906											
ENPP6	133121	broad.mit.edu	37	chr4	185033794	185033794	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttttatagaatttgcataGagaataaattggcacatatt	7	3	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185033794	A	A	185033794	1	1	74	0	1	0	0	0	0	0	0	0	5176	957	33	4		4	ENPP6	4	185033794	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	446197	185033794	6120482	453	80907											
CYP4V2	285440	broad.mit.edu	37	chr4	187118127	187118127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgctccaggagaaagatGttaacacccactttccattt	8	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187118127	T	T	187118127	3	4	74	1	0	0	0	0	1	0	0	0	4225	1377	48	3	461	3	CYP4V2	4	187118127	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2084333	187118127	4036149	454	80908											
FAT1	2195	broad.mit.edu	37	chr4	187532546	187532546	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatggtaggttacctgtttTagaatctatgctgaatttcc	8	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187532546	A	A	187532546	4	1	74	1	0	0	0	0	0	1	0	0	5746	1763	61	5	3975	5	FAT1	4	187532546	Nonsense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	414419	187532546	3621730	455	80909											
ADCY2	108	broad.mit.edu	37	chr5	7626395	7626395	+	Nonsense_Mutation	SNP	C	A	A													cacctgtaattgcatcaagtCgcggatcaagttggaatttg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7626395	A	A	7626395	4	1	74	1	0	0	0	0	0	1	0	0	294	893	31	3	700	3	ADCY2	5	7626395	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08		7626395	173288865	456	80910	368	2									
ADCY2	108	broad.mit.edu	37	chr5	7626402	7626402	+	Silent	SNP	C	A	A													aattgcatcaagtcgcggatCaagttggaatttgaaaaacg					rs6865872		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7626402	A	A	7626402	2	1	74	1	0	0	0	0	0	0	0	1	294	816	29	3		3	ADCY2	5	7626402	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	7	7626402	173288858	457	80911	368	2									
ADCY2	108	broad.mit.edu	37	chr5	7698196	7698196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcatgtaggggagggcagCtcattctggttgagtaatga	16	6	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7698196	A	A	7698196	1	1	74	0	1	0	0	0	0	0	0	0	294	812	28	3		3	ADCY2	5	7698196	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	71794	7698196	173217064	458	80912											
SEMA5A	9037	broad.mit.edu	37	chr5	9197248	9197248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcattcttcatgggggatgCcaacagtgcccctttgcccc	10	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9197248	A	A	9197248	1	1	74	0	1	0	0	0	0	0	0	0	14150	754	26	3		3	SEMA5A	5	9197248	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1499052	9197248	171718012	459	80913											
SEMA5A	9037	broad.mit.edu	37	chr5	9238004	9238004	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacactcccattccacagccTgtagaaaacaccaaaacaat	3	15	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9238004	A	A	9238004	5	1	74	1	0	0	0	0	0	0	1	0	14150	1594	55	5	3027	5	SEMA5A	5	9238004	Splice_Site	SNP	T	TCGA-17-Z045-01A-01W-0746-08	40756	9238004	171677256	460	80914											
SEMA5A	9037	broad.mit.edu	37	chr5	9318358	9318358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttagtcccgtggcctgacCtgctgaggaaacgagcccct	11	15	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9318358	A	A	9318358	1	1	74	0	1	0	0	0	0	0	0	0	14150	696	24	2		2	SEMA5A	5	9318358	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	80354	9318358	171596902	461	80915											
CTNND2	1501	broad.mit.edu	37	chr5	11117484	11117484	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaatactgcattggctctCcagggttgttagctattgtt	10	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11117484	A	A	11117484	1	1	74	0	1	0	0	0	0	0	0	0	4054	870	30	3		3	CTNND2	5	11117484	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1799126	11117484	169797776	462	80916											
DNAH5	1767	broad.mit.edu	37	chr5	13890975	13890975	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgaatcacttctatcacaGagcactgcaagtagagaaaa	7	9	4	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13890975	A	A	13890975	1	1	74	0	1	0	0	0	0	0	0	0	4644	957	33	4		4	DNAH5	5	13890975	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2773491	13890975	167024285	463	80917											
DNAH5	1767	broad.mit.edu	37	chr5	13919512	13919512	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacggggctggagacgcTaaagttataaacaagcaaaa	11	7	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13919512	C	C	13919512	1	2	74	0	1	0	0	0	0	0	0	0	4644	1537	53	5		5	DNAH5	5	13919512	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	28537	13919512	166995748	464	80918											
TRIO	7204	broad.mit.edu	37	chr5	14508072	14508072	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgctgttcagctcaacacGacctactacatccaccagtt	6	14	2	0	rs147521780	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14508072	T	T	14508072	2	4	74	1	0	0	0	0	0	0	0	1	16677	1045	37	3		3	TRIO	5	14508072	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	588560	14508072	166407188	465	80919											
ANKH	56172	broad.mit.edu	37	chr5	14797910	14797910	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtcccacaggcagatggtGtggtcatctgaagcactaag	12	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797910	A	A	14797910	1	1	74	0	1	0	0	0	0	0	0	0	627	1392	48	4		4	ANKH	5	14797910	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	289838	14797910	166117350	466	80920											
FBXL7	23194	broad.mit.edu	37	chr5	15628494	15628494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaagatggatggtggagCgaagatgtttccagtatctt	13	4	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15628494	A	A	15628494	1	1	74	0	1	0	0	0	0	0	0	0	5781	783	27	3		3	FBXL7	5	15628494	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	830584	15628494	165286766	467	80921											
FBXL7	23194	broad.mit.edu	37	chr5	15937230	15937230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggtctccgtggaggccCtgcgctttgtcaaacgccac	13	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15937230	A	A	15937230	3	1	74	1	0	0	0	0	1	0	0	0	5781	680	24	2	1425	2	FBXL7	5	15937230	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	308736	15937230	164978030	468	80922											
MARCH11	441061	broad.mit.edu	37	chr5	16067613	16067613	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctcatcacaacctccccCgagctgttatcttctgataa	4	15	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16067613	A	A	16067613	2	1	74	1	0	0	0	0	0	0	0	1	9392	639	23	1		1	MARCH11	5	16067613	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	130383	16067613	164847647	469	80923											
CDH12	1010	broad.mit.edu	37	chr5	22654228	22654228	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccttccctgtccttccCgttccttctcccttcccctt	2	22	1	0	rs147495015	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22654228	A	A	22654228	1	1	74	0	1	0	0	0	0	0	0	0	3128	667	23	1		1	CDH12	5	22654228	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6586615	22654228	158261032	470	80924											
PRDM9	56979	broad.mit.edu	37	chr5	23509749	23509749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgggagacataaaacaGgtctttggtccctatattat	9	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509749	T	T	23509749	1	4	74	0	1	0	0	0	0	0	0	0	12569	1015	35	2		2	PRDM9	5	23509749	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	855521	23509749	157405511	471	80925											
RNASEN	29102	broad.mit.edu	37	chr5	31521491	31521491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttattagaggataaaggagCttttcactttacagaagtta	8	4	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31521491	A	A	31521491	1	1	74	0	1	0	0	0	0	0	0	0	13528	812	28	3		3	RNASEN	5	31521491	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8011742	31521491	149393769	472	80926											
ADAMTS12	81792	broad.mit.edu	37	chr5	33624328	33624328	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacttcgattatttatttgTttattaccagatccttcctt	3	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33624328	G	G	33624328	1	3	74	0	1	0	0	0	0	0	0	0	257	1740	60	5		5	ADAMTS12	5	33624328	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2102837	33624328	147290932	473	80927											
CAPSL	133690	broad.mit.edu	37	chr5	35919882	35919882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcagatggcacattctGcaaaaggcttaggatggaac	13	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35919882	T	T	35919882	1	4	74	0	1	0	0	0	0	0	0	0	2665	1334	46	3		3	CAPSL	5	35919882	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2295554	35919882	144995378	474	80928											
SLC1A3	6507	broad.mit.edu	37	chr5	36671276	36671276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcacaaaggaaaacatGcacagagaaggcaaaattgt	11	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36671276	T	T	36671276	3	4	74	1	0	0	0	0	1	0	0	0	14546	1319	46	3	492	3	SLC1A3	5	36671276	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	751394	36671276	144243984	475	80929											
C5orf42	65250	broad.mit.edu	37	chr5	37122447	37122447	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacaaaaaagagactattgTgaaaacagaattcctaaggc	8	6	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37122447	G	G	37122447	1	3	74	0	1	0	0	0	0	0	0	0	2324	1711	59	5		5	C5orf42	5	37122447	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	451171	37122447	143792813	476	80930											
LIFR	3977	broad.mit.edu	37	chr5	38493703	38493703	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgagagacactaattcatCttaccagattctattacagt	5	8	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38493703	A	A	38493703	1	1	74	0	1	0	0	0	0	0	0	0	8852	928	32	3		3	LIFR	5	38493703	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1371256	38493703	142421557	477	80931											
FYB	2533	broad.mit.edu	37	chr5	39202016	39202016	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggacccaaggtaaacaaGggaggcaatggcttctgttt	14	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39202016	T	T	39202016	2	4	74	1	0	0	0	0	0	0	0	1	6184	987	35	2		2	FYB	5	39202016	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	708313	39202016	141713244	478	80932											
FYB	2533	broad.mit.edu	37	chr5	39203010	39203010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgactctgaagggtcggCtattgactgagacatcctct	11	10	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39203010	A	A	39203010	3	1	74	1	0	0	0	0	1	0	0	0	6184	797	28	3	2508	3	FYB	5	39203010	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	994	39203010	141712250	479	80933											
HEATR7B2	133558	broad.mit.edu	37	chr5	41009583	41009583	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttttccatctgactcactCtaaaatcacattatgactaa	3	11	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41009583	A	A	41009583	1	1	74	0	1	0	0	0	0	0	0	0	7102	928	32	3		3	HEATR7B2	5	41009583	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1806573	41009583	139905677	480	80934											
HEATR7B2	133558	broad.mit.edu	37	chr5	41065564	41065564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagacaccaaaacctcaCcagctagcattctgatttct	5	13	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41065564	A	A	41065564	3	1	74	1	0	0	0	0	1	0	0	0	7102	507	18	3	4683	3	HEATR7B2	5	41065564	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	55981	41065564	139849696	481	80935											
HMGCS1	3157	broad.mit.edu	37	chr5	43298869	43298869	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccacagtcatgcaaagagAgttaatatcttctctatctg	6	9	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43298869	C	C	43298869	3	2	74	1	0	0	0	0	1	0	0	0	7299	304	11	5	1399	5	HMGCS1	5	43298869	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2233305	43298869	137616391	482	80936											
NNT	23530	broad.mit.edu	37	chr5	43612974	43612974	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttttgtttgtttttttacCaaatatatattttttttgcc	3	4	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43612974	G	G	43612974	1	3	74	0	1	0	0	0	0	0	0	0	10605	609	21	4		4	NNT	5	43612974	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	314105	43612974	137302286	483	80937											
FGF10	2255	broad.mit.edu	37	chr5	44388335	44388335	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attagtgtgaaagtattccaCttaatcattttacaggggtt	8	5	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44388335	G	G	44388335	1	3	74	0	1	0	0	0	0	0	0	0	5896	580	20	4		4	FGF10	5	44388335	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	775361	44388335	136526925	484	80938											
ITGA2	3673	broad.mit.edu	37	chr5	52340915	52340915	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggaacatgggaactggagGttttctcgtgagtgtttact	13	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52340915	C	C	52340915	3	2	74	1	0	0	0	0	1	0	0	0	7945	1261	44	4	394	4	ITGA2	5	52340915	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	7952580	52340915	128574345	485	80939											
HSPB3	8988	broad.mit.edu	37	chr5	53751613	53751613	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcaaggctgtttttgcCttcactatggcaaaaatcat	7	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53751613	A	A	53751613	1	1	74	0	1	0	0	0	0	0	0	0	7490	696	24	2		2	HSPB3	5	53751613	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1410698	53751613	127163647	486	80940											
IL31RA	133396	broad.mit.edu	37	chr5	55164775	55164775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttatcagtcagggcatgGgggaggcagaggcttctgat	16	6	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55164775	T	T	55164775	1	4	74	0	1	0	0	0	0	0	0	0	7761	1247	43	2		2	IL31RA	5	55164775	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1413162	55164775	125750485	487	80941											
PLK2	10769	broad.mit.edu	37	chr5	57750882	57750882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagtgagttagtgcctaCaaagattttgtagcatgcac	12	6	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57750882	A	A	57750882	1	1	74	0	1	0	0	0	0	0	0	0	12191	493	17	3		3	PLK2	5	57750882	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2586107	57750882	123164378	488	80942											
RAB3C	115827	broad.mit.edu	37	chr5	58120941	58120941	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaagtgtgacatggaagacGagcgggtcatctcaactgag	13	8	2	3	rs140644565		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58120941	T	T	58120941	4	4	74	1	0	0	0	0	0	1	0	0	13041	1059	37	3	462	3	RAB3C	5	58120941	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	370059	58120941	122794319	489	80943											
PDE4D	5144	broad.mit.edu	37	chr5	59258912	59258912	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggacacaatcccaatgacAgagcaaaagcatctagggat	10	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59258912	T	T	59258912	1	4	74	0	1	0	0	0	0	0	0	0	11736	203	7	5		5	PDE4D	5	59258912	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1137971	59258912	121656348	490	80944											
HTR1A	3350	broad.mit.edu	37	chr5	63256623	63256623	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtaggaccagcctcgctGggcagaggcaagtgctcttt	16	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63256623	T	T	63256623	2	4	74	1	0	0	0	0	0	0	0	1	7506	1335	47	2		2	HTR1A	5	63256623	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3997711	63256623	117658637	491	80945											
ADAMTS6	11174	broad.mit.edu	37	chr5	64747992	64747992	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaacaattaagcgggccaCtataatattcacaacgtttc	7	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64747992	G	G	64747992	3	3	74	1	0	0	0	0	1	0	0	0	270	565	20	4	2538	4	ADAMTS6	5	64747992	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1491369	64747992	116167268	492	80946											
HMGCR	3156	broad.mit.edu	37	chr5	74654395	74654395	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttattatacttagaaatatAtcatagatacaaattcttct	3	5	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74654395	G	G	74654395	1	3	74	0	1	0	0	0	0	0	0	0	7298	464	16	5		5	HMGCR	5	74654395	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	9906403	74654395	106260865	493	80947											
SV2C	22987	broad.mit.edu	37	chr5	75427754	75427754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgatgatgactactaccCggctggagaaacctataatg	10	8	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75427754	A	A	75427754	3	1	74	1	0	0	0	0	1	0	0	0	15537	652	23	1	181	1	SV2C	5	75427754	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	773359	75427754	105487506	494	80948											
IQGAP2	10788	broad.mit.edu	37	chr5	75914496	75914496	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaagtattaacataaAtgtatagttcaagagaaaag	8	2	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75914496	C	C	75914496	1	2	74	0	1	0	0	0	0	0	0	0	7885	116	4	5		5	IQGAP2	5	75914496	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	486742	75914496	105000764	495	80949											
PDE8B	8622	broad.mit.edu	37	chr5	76587414	76587414	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatctgggcagaatctttcGctggcttggacctaaaggat	12	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76587414	C	C	76587414	1	2	74	0	1	0	0	0	0	0	0	0	11748	1102	38	4		4	PDE8B	5	76587414	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	672918	76587414	104327846	496	80950											
SPZ1	84654	broad.mit.edu	37	chr5	79616477	79616477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggagatgatattggaaaCcaatattactgaggatgtgt	11	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79616477	A	A	79616477	3	1	74	1	0	0	0	0	1	0	0	0	15245	507	18	3	445	3	SPZ1	5	79616477	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3029063	79616477	101298783	497	80951											
VCAN	1462	broad.mit.edu	37	chr5	82817274	82817274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaccagttcctgctctcaGttctacagcttggactccca	7	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82817274	T	T	82817274	3	4	74	1	0	0	0	0	1	0	0	0	17265	1029	36	3	3171	3	VCAN	5	82817274	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3200797	82817274	98097986	498	80952											
VCAN	1462	broad.mit.edu	37	chr5	82837181	82837181	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagtattgctactacccacCttatggatcagagtgtaaca	7	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82837181	T	T	82837181	3	4	74	1	0	0	0	0	1	0	0	0	17265	681	24	4	8385	4	VCAN	5	82837181	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	19907	82837181	98078079	499	80953											
HAPLN1	1404	broad.mit.edu	37	chr5	82948296	82948296	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagtccagtgctaccacaaCagtatcatcttctaatcctt	4	12	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82948296	G	G	82948296	3	3	74	1	0	0	0	0	1	0	0	0	7020	478	17	4	628	4	HAPLN1	5	82948296	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	111115	82948296	97966964	500	80954											
EDIL3	10085	broad.mit.edu	37	chr5	83362356	83362356	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtaggattttatatactCtgggcttccaatcctcttgg	8	8	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83362356	A	A	83362356	4	1	74	1	0	0	0	0	0	1	0	0	4955	922	32	3	741	3	EDIL3	5	83362356	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	414060	83362356	97552904	501	80955											
FER	2241	broad.mit.edu	37	chr5	108387171	108387171	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcaaaaggctgtgcgtGggagttagagatggtgcttc	15	5	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108387171	T	T	108387171	1	4	74	0	1	0	0	0	0	0	0	0	5870	1363	47	2		2	FER	5	108387171	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	25024815	108387171	72528089	502	80956											
APC	324	broad.mit.edu	37	chr5	112177307	112177307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagtaaacctcaagcatcaGgctatgctcctaaatcattt	5	11	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112177307	C	C	112177307	3	2	74	1	0	0	0	0	1	0	0	0	765	1000	35	4	6074	4	APC	5	112177307	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3790136	112177307	68737953	503	80957											
KCNN2	3781	broad.mit.edu	37	chr5	113831826	113831826	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcggtcccggtcctcgtccAggaggcggcggtcctcttcc	14	16	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113831826	T	T	113831826	3	4	74	1	0	0	0	0	1	0	0	0	8149	179	7	5	1717	5	KCNN2	5	113831826	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1654519	113831826	67083434	504	80958											
AP3S1	1176	broad.mit.edu	37	chr5	115205752	115205752	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaaactgatttatagacAttatgcaacgttatattttg	5	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115205752	G	G	115205752	3	3	74	1	0	0	0	0	1	0	0	0	751	217	8	5	210	5	AP3S1	5	115205752	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1373926	115205752	65709508	505	80959											
PRR16	51334	broad.mit.edu	37	chr5	120022254	120022254	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccctccctcctacaccCcatctccctcctttcccact	0	26	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120022254	A	A	120022254	2	1	74	1	0	0	0	0	0	0	0	1	12695	610	22	2		2	PRR16	5	120022254	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4816502	120022254	60893006	506	80960											
GRAMD3	65983	broad.mit.edu	37	chr5	125819143	125819143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgtcttcatttcactGtttcctttcaggatttcaat	5	11	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125819143	T	T	125819143	1	4	74	0	1	0	0	0	0	0	0	0	6817	1392	48	3		3	GRAMD3	5	125819143	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5796889	125819143	55096117	507	80961											
LMNB1	4001	broad.mit.edu	37	chr5	126161782	126161782	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagatgtgaaggttatattgAaaaattctcagggagaggta	12	2	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126161782	T	T	126161782	4	4	74	1	0	0	0	0	0	1	0	0	8923	247	9	5	1628	5	LMNB1	5	126161782	Nonsense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	342639	126161782	54753478	508	80962											
PRRC1	133619	broad.mit.edu	37	chr5	126860319	126860319	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgccccttcctcctgtgaGgccttcagcaccattacctt	7	18	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126860319	C	C	126860319	3	2	74	1	0	0	0	0	1	0	0	0	12710	1000	35	4	206	4	PRRC1	5	126860319	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	698537	126860319	54054941	509	80963											
FBN2	2201	broad.mit.edu	37	chr5	127645783	127645783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacacacaccaggatgtgCaaaacactcatcaatatcta	4	14	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127645783	A	A	127645783	3	1	74	1	0	0	0	0	1	0	0	0	5760	710	25	3	3750	3	FBN2	5	127645783	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	785464	127645783	53269477	510	80964											
FBN2	2201	broad.mit.edu	37	chr5	127763130	127763130	+	Intron	DEL	T	-	-													tgacccccaccaaaaggatcTgctggcacatagacctcaga							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127763130	-	-	127763130	6	5	74	0	1	1	0	1	0	0	0	0	5760	1595	55	0		0	FBN2	5	127763130	Intron	DEL	T	TCGA-17-Z045-01A-01W-0746-08	117347	127763130	53152130	511	80965											
TRPC7	57113	broad.mit.edu	37	chr5	135587494	135587494	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggacagcatcccgaaatcTagcaggttccacaagtgcag	10	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135587494	C	C	135587494	2	2	74	1	0	0	0	0	0	0	0	1	16709	1509	53	5		5	TRPC7	5	135587494	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	7824364	135587494	45327766	512	80966											
REEP2	51308	broad.mit.edu	37	chr5	137774945	137774945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgtgagtgcggcggcgGcggggggtgatgcgggctgt	25	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137774945	T	T	137774945	1	4	74	0	1	0	0	0	0	0	0	0	13313	1218	42	3		3	REEP2	5	137774945	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2187451	137774945	43140315	513	80967											
EGR1	1958	broad.mit.edu	37	chr5	137803056	137803056	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccaggacctgaaggcCctcaataccagctaccagtc	9	16	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137803056	G	G	137803056	2	3	74	1	0	0	0	0	0	0	0	1	5011	610	22	4		4	EGR1	5	137803056	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	28111	137803056	43112204	514	80968											
CTNNA1	1495	broad.mit.edu	37	chr5	138094733	138094733	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactcctgacctcaggtgatCagccagccttggcttcccaa	8	15	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138094733	A	A	138094733	1	1	74	0	1	0	0	0	0	0	0	0	4046	841	29	3		3	CTNNA1	5	138094733	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	291677	138094733	42820527	515	80969											
PCDHA2	56146	broad.mit.edu	37	chr5	140176248	140176248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacgcgccggcactgttgGcgcctagggctggcaccgct	14	15	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140176248	T	T	140176248	3	4	74	1	0	0	0	0	1	0	0	0	11618	1203	42	3	1701	3	PCDHA2	5	140176248	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2081515	140176248	40739012	516	80970											
PCDHA8	56140	broad.mit.edu	37	chr5	140221203	140221203	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggagctgtgcgggcggagCgcggagtgcagcatccacct	18	11	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140221203	G	G	140221203	3	3	74	1	0	0	0	0	1	0	0	0	11624	767	27	4	299	4	PCDHA8	5	140221203	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	44955	140221203	40694057	517	80971											
PCDHAC1	56135	broad.mit.edu	37	chr5	140306846	140306846	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaatgacaactcacctctCtttcctgccggcgacgtgca	7	16	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140306846	T	T	140306846	2	4	74	1	0	0	0	0	0	0	0	1	11626	900	32	4		4	PCDHAC1	5	140306846	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	85643	140306846	40608414	518	80972											
PCDHB16	57717	broad.mit.edu	37	chr5	140563361	140563361	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggtaacggagagagcactCgacagagaagcaagagctga	14	7	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140563361	A	A	140563361	2	1	74	1	0	0	0	0	0	0	0	1	11635	871	31	3		3	PCDHB16	5	140563361	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	256515	140563361	40351899	519	80973											
PCDHB12	56124	broad.mit.edu	37	chr5	140590108	140590108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccccggctttgagcagCgaggcgctggtgcgcgtgct	17	13	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140590108	A	A	140590108	3	1	74	1	0	0	0	0	1	0	0	0	11631	767	27	3	1631	3	PCDHB12	5	140590108	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	26747	140590108	40325152	520	80974											
PCDHB15	56121	broad.mit.edu	37	chr5	140625448	140625448	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgtggccctactgagcCctgtataatgcatttccaag	10	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140625448	T	T	140625448	3	4	74	1	0	0	0	0	1	0	0	0	11634	623	22	4	304	4	PCDHB15	5	140625448	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	35340	140625448	40289812	521	80975											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736948	140736948	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtcacgcctgcttcacgcTgaaggcagcaggttggcagg	14	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140736948	A	A	140736948	2	1	74	1	0	0	0	0	0	0	0	1	11650	1567	55	5		5	PCDHGA4	5	140736948	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	111500	140736948	40178312	522	80976											
PCDHGA7	56108	broad.mit.edu	37	chr5	140763581	140763581	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgctcttttctacctacAagacagagattctggaaaga	7	9	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140763581	G	G	140763581	3	3	74	1	0	0	0	0	1	0	0	0	11653	130	5	5	1117	5	PCDHGA7	5	140763581	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	26633	140763581	40151679	523	80977											
PCDHGA8	9708	broad.mit.edu	37	chr5	140772616	140772616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctctttgctctgaaccCgcgcagcggcagcttgatca	11	14	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140772616	A	A	140772616	3	1	74	1	0	0	0	0	1	0	0	0	11654	652	23	1	238	1	PCDHGA8	5	140772616	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9035	140772616	40142644	524	80978											
PCDHGA9	56107	broad.mit.edu	37	chr5	140782984	140782984	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagcacgttatccacttccAgaagctattgatccggatgt	10	10	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140782984	G	G	140782984	2	3	74	1	0	0	0	0	0	0	0	1	11655	175	7	5		5	PCDHGA9	5	140782984	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	10368	140782984	40132276	525	80979											
DIAPH1	1729	broad.mit.edu	37	chr5	140909776	140909776	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccctaacaaatacatcctgTtttttcaactctccctttct	1	14	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140909776	A	A	140909776	1	1	74	0	1	0	0	0	0	0	0	0	4558	1740	60	5		5	DIAPH1	5	140909776	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	126792	140909776	40005484	526	80980											
ARAP3	64411	broad.mit.edu	37	chr5	141050076	141050076	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccatcccttggctccccctCaccatcccggcccctgcgag	7	23	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141050076	A	A	141050076	1	1	74	0	1	0	0	0	0	0	0	0	842	841	29	3		3	ARAP3	5	141050076	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	140300	141050076	39865184	527	80981											
KIAA0141	9812	broad.mit.edu	37	chr5	141309655	141309655	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggtattatccagatttGgccacctggatccccataac	7	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141309655	C	C	141309655	1	2	74	0	1	0	0	0	0	0	0	0	8226	1363	47	4		4	KIAA0141	5	141309655	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	259579	141309655	39605605	528	80982											
FGF1	2246	broad.mit.edu	37	chr5	141993534	141993534	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggcttactgtgctggtcGctcctgtcccttgtcccatc	10	14	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141993534	A	A	141993534	2	1	74	1	0	0	0	0	0	0	0	1	5895	1078	38	4		4	FGF1	5	141993534	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	683879	141993534	38921726	529	80983											
KCTD16	57528	broad.mit.edu	37	chr5	143586460	143586460	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccccaaagagagacacGgctaatgatctagccaagga	9	10	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143586460	T	T	143586460	2	4	74	1	0	0	0	0	0	0	0	1	8173	1103	39	1		1	KCTD16	5	143586460	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1592926	143586460	37328800	530	80984											
SH3RF2	153769	broad.mit.edu	37	chr5	145435380	145435380	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaggtggggccaactttaGttaagcctgtagttcacaaa	13	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145435380	C	C	145435380	1	2	74	0	1	0	0	0	0	0	0	0	14372	1044	36	4		4	SH3RF2	5	145435380	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1848920	145435380	35479880	531	80985											
JAKMIP2	9832	broad.mit.edu	37	chr5	147015701	147015701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttcccctggcccctgtGccactcctgagagcaccccc	7	23	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147015701	T	T	147015701	1	4	74	0	1	0	0	0	0	0	0	0	8011	1334	46	3		3	JAKMIP2	5	147015701	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1580321	147015701	33899559	532	80986											
ANXA6	309	broad.mit.edu	37	chr5	150484662	150484662	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaataccatcctagagccAgacaagggcagatgctaata	10	9	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150484662	G	G	150484662	1	3	74	0	1	0	0	0	0	0	0	0	722	203	7	5		5	ANXA6	5	150484662	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3468961	150484662	30430598	533	80987											
ANXA6	309	broad.mit.edu	37	chr5	150505903	150505903	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgccaaccagagcagcagGaaggtgcaagcagagaagct	15	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150505903	T	T	150505903	1	4	74	0	1	0	0	0	0	0	0	0	722	1189	41	3		3	ANXA6	5	150505903	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	21241	150505903	30409357	534	80988											
GM2A	2760	broad.mit.edu	37	chr5	150757808	150757808	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatacaaagttctggttcaTtaaacaccatcccaacagac	4	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150757808	C	C	150757808	1	2	74	0	1	0	0	0	0	0	0	0	6548	1508	52	5		5	GM2A	5	150757808	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	251905	150757808	30157452	535	80989											
ITK	3702	broad.mit.edu	37	chr5	156679719	156679719	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaccaggccacgggctgcaGatcctgaatggaggaaggat	15	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156679719	T	T	156679719	1	4	74	0	1	0	0	0	0	0	0	0	7979	957	33	3		3	ITK	5	156679719	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5921911	156679719	24235541	536	80990											
ADAM19	8728	broad.mit.edu	37	chr5	156930057	156930057	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggcaggtgtcactcgtGctgtcactcctgctacccgt	11	14	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156930057	C	C	156930057	1	2	74	0	1	0	0	0	0	0	0	0	240	1334	46	4		4	ADAM19	5	156930057	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	250338	156930057	23985203	537	80991											
ATP10B	23120	broad.mit.edu	37	chr5	160059086	160059086	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacattccagagcaccctccCtctcttcccacagaacactt	3	19	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160059086	G	G	160059086	1	3	74	0	1	0	0	0	0	0	0	0	1121	696	24	4		4	ATP10B	5	160059086	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3129029	160059086	20856174	538	80992											
GABRA6	2559	broad.mit.edu	37	chr5	161116055	161116055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaataatttgatggtcaGtaaaatctggacgcctgaca	9	7	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161116055	T	T	161116055	3	4	74	1	0	0	0	0	1	0	0	0	6225	1029	36	3	340	3	GABRA6	5	161116055	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1056969	161116055	19799205	539	80993											
GABRA6	2559	broad.mit.edu	37	chr5	161118881	161118881	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttctcctctgacacatTctcatttgattttgccatag	5	11	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161118881	A	A	161118881	1	1	74	0	1	0	0	0	0	0	0	0	6225	1798	62	5		5	GABRA6	5	161118881	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2826	161118881	19796379	540	80994											
HMMR	3161	broad.mit.edu	37	chr5	162898350	162898350	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttctcatttcctaaaacAggtatctttgttgtgtaggg	8	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162898350	T	T	162898350	1	4	74	0	1	0	0	0	0	0	0	0	7309	203	7	5		5	HMMR	5	162898350	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1779469	162898350	18016910	541	80995											
ODZ2	57451	broad.mit.edu	37	chr5	167625938	167625938	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgagccaggagcgcactgTgtggctgccgtggaacagct	15	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167625938	A	A	167625938	3	1	74	1	0	0	0	0	1	0	0	0	10930	1696	59	5	3016	5	ODZ2	5	167625938	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4727588	167625938	13289322	542	80996											
ODZ2	57451	broad.mit.edu	37	chr5	167689373	167689373	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaagattggctcagccgAtggcgacctggtcacactag	13	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167689373	T	T	167689373	3	4	74	1	0	0	0	0	1	0	0	0	10930	333	12	5	7970	5	ODZ2	5	167689373	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	63435	167689373	13225887	543	80997											
SLIT3	6586	broad.mit.edu	37	chr5	168212741	168212741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctgcccgctcgctgaCtctcctttcataaaaatagg	6	14	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168212741	A	A	168212741	1	1	74	0	1	0	0	0	0	0	0	0	14855	580	20	3		3	SLIT3	5	168212741	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	523368	168212741	12702519	544	80998											
DOCK2	1794	broad.mit.edu	37	chr5	169126444	169126444	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagtcatagcctccaagGgggacagtggagggcaaggt	16	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169126444	A	A	169126444	3	1	74	1	0	0	0	0	1	0	0	0	4727	1232	43	4	1160	4	DOCK2	5	169126444	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	913703	169126444	11788816	545	80999											
KCNIP1	30820	broad.mit.edu	37	chr5	169812226	169812226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgccttgaatgagggtcaAggagaggggtgagtagaagg	19	4	1	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169812226	T	T	169812226	1	4	74	0	1	0	0	0	0	0	0	0	8109	87	3	5		5	KCNIP1	5	169812226	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	685782	169812226	11103034	546	81000											
HMP19	51617	broad.mit.edu	37	chr5	173525273	173525273	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtggggagaggtacatgAgactggagggtggttgaggg	21	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173525273	G	G	173525273	1	3	74	0	1	0	0	0	0	0	0	0	7312	319	11	5		5	HMP19	5	173525273	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3713047	173525273	7389987	547	81001											
SNCB	6620	broad.mit.edu	37	chr5	176048192	176048192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggattcccaaagtcccGcccagccctgctgccccctc	7	21	0	0	rs116166081	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176048192	T	T	176048192	1	4	74	0	1	0	0	0	0	0	0	0	14956	1102	38	3		3	SNCB	5	176048192	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2522919	176048192	4867068	548	81002											
UNC5A	90249	broad.mit.edu	37	chr5	176258423	176258423	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacattttacccaacacagcGgggatactggccttctctgc	8	14	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176258423	A	A	176258423	1	1	74	0	1	0	0	0	0	0	0	0	17117	1131	39	4		4	UNC5A	5	176258423	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	210231	176258423	4656837	549	81003											
HK3	3101	broad.mit.edu	37	chr5	176315824	176315824	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgagccagcaccagccgcAccagctcacccaggtacagg	11	16	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176315824	G	G	176315824	3	3	74	1	0	0	0	0	1	0	0	0	7259	159	6	5	1859	5	HK3	5	176315824	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	57401	176315824	4599436	550	81004											
FGFR4	2264	broad.mit.edu	37	chr5	176516639	176516639	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccctgttgggggtcctgctGagtgtgcctgggcctccagt	16	12	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176516639	T	T	176516639	2	4	74	1	0	0	0	0	0	0	0	1	5925	1277	45	3		3	FGFR4	5	176516639	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	200815	176516639	4398621	551	81005											
TBC1D7	51256	broad.mit.edu	37	chr6	13307837	13307837	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagacctacttgcctctgTaaactggattcaggcaaaca	8	10	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13307837	A	A	13307837	3	1	74	1	0	0	0	0	1	0	0	0	15746	1635	57	5	233	5	TBC1D7	6	13307837	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08		13307837	157807230	552	81006											
SLC17A2	10246	broad.mit.edu	37	chr6	25921243	25921243	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacacttacctgatcctgCaatggtggtgagcttgcttc	10	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25921243	G	G	25921243	3	3	74	1	0	0	0	0	1	0	0	0	14530	710	25	4	785	4	SLC17A2	6	25921243	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	12613406	25921243	145193824	553	81007											
HIST1H3E	8353	broad.mit.edu	37	chr6	26225652	26225652	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgcttccagagttccgcggtGatggcgctgcaggaggcctg	16	12	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26225652	A	A	26225652	2	1	74	1	0	0	0	0	0	0	0	1	7226	1277	45	4		4	HIST1H3E	6	26225652	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	304409	26225652	144889415	554	81008											
HIST1H2BH	8345	broad.mit.edu	37	chr6	26251885	26251885	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttatcttgttgcaatgcctGatccagctaagtccgctccc	7	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26251885	C	C	26251885	3	2	74	1	0	0	0	0	1	0	0	0	7214	1290	45	4	9	4	HIST1H2BH	6	26251885	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	26233	26251885	144863182	555	81009											
HLA-F	3134	broad.mit.edu	37	chr6	29694052	29694052	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtggggtgttgggggggAacagaggggactcagctgtg	22	4	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29694052	G	G	29694052	1	3	74	0	1	0	0	0	0	0	0	0	7278	261	9	5		5	HLA-F	6	29694052	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3442167	29694052	141421015	556	81010											
BAT4	7918	broad.mit.edu	37	chr6	31631853	31631854	+	Frame_Shift_Ins	INS	-	C	C													gcatcccgggcgttgatattINSccccccagctcctcctgcct							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31631854	C	C	31631853	7	5	74	1	0	1	1	0	0	0	0	0	1328	1783	62	0	675	0	BAT4	6	31631853	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	1937801	31631853	139483214	557	81011											
TNXB	7148	broad.mit.edu	37	chr6	32047089	32047089	+	Frame_Shift_Del	DEL	C	-	-													ctcctcgggggactccggggCctccgtgcccagttctgtgg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32047089	-	-	32047089	7	5	74	1	0	1	0	1	0	0	0	0	16469	739	26	0	10753	0	TNXB	6	32047089	Frame_Shift_Del	DEL	C	TCGA-17-Z045-01A-01W-0746-08	415236	32047089	139067978	558	81012											
DNAH8	1769	broad.mit.edu	37	chr6	38976746	38976746	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgattacattcctcatgaGgtaagtcttgctggtttccc	8	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38976746	C	C	38976746	3	2	74	1	0	0	0	0	1	0	0	0	4647	1014	35	4	13058	4	DNAH8	6	38976746	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6929657	38976746	132138321	559	81013											
DAAM2	23500	broad.mit.edu	37	chr6	39841121	39841121	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgctgcaccactgcctGcagatgccctgtaagtaccc	9	15	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39841121	C	C	39841121	2	2	74	1	0	0	0	0	0	0	0	1	4249	1306	46	4		4	DAAM2	6	39841121	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	864375	39841121	131273946	560	81014											
SPATS1	221409	broad.mit.edu	37	chr6	44328186	44328186	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgctttctttccagcacCactgctgacttggatcggaa	8	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44328186	A	A	44328186	2	1	74	1	0	0	0	0	0	0	0	1	15134	581	21	2		2	SPATS1	6	44328186	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4487065	44328186	126786881	561	81015											
CLIC5	53405	broad.mit.edu	37	chr6	45871009	45871009	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatctaaaacagagatggcAggacagaggtggtgtgaagg	15	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45871009	G	G	45871009	1	3	74	0	1	0	0	0	0	0	0	0	3561	203	7	5		5	CLIC5	6	45871009	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1542823	45871009	125244058	562	81016											
CENPQ	55166	broad.mit.edu	37	chr6	49438088	49438088	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcactttgggaggccgaggtGggtggatcacgaggtcagga	19	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49438088	C	C	49438088	1	2	74	0	1	0	0	0	0	0	0	0	3271	1363	47	4		4	CENPQ	6	49438088	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3567079	49438088	121676979	563	81017											
CRISP3	10321	broad.mit.edu	37	chr6	49701087	49701087	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatagtaggaaatacaaaatGgagaagaatgttaccgacat	9	4	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49701087	A	A	49701087	1	1	74	0	1	0	0	0	0	0	0	0	3913	1363	47	4		4	CRISP3	6	49701087	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	262999	49701087	121413980	564	81018											
DEFB113	245927	broad.mit.edu	37	chr6	49936629	49936629	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagatttaatatccttagaTacagagatgaataaactctt	5	7	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49936629	A	A	49936629	1	1	74	0	1	0	0	0	0	0	0	0	4441	1421	49	5		5	DEFB113	6	49936629	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	235542	49936629	121178438	565	81019											
PKHD1	5314	broad.mit.edu	37	chr6	51512866	51512866	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgctccttccagggaagcTgaaattgtccatggctctga	11	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51512866	A	A	51512866	2	1	74	1	0	0	0	0	0	0	0	1	12066	1567	55	5		5	PKHD1	6	51512866	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1576237	51512866	119602201	566	81020											
PKHD1	5314	broad.mit.edu	37	chr6	51774220	51774220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactctggctcccatatcCctggatcctagcatcttctc	5	16	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51774220	A	A	51774220	3	1	74	1	0	0	0	0	1	0	0	0	12066	622	22	2	5832	2	PKHD1	6	51774220	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	261354	51774220	119340847	567	81021											
HCRTR2	3062	broad.mit.edu	37	chr6	55039696	55039696	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaagagacccctccctccCccgggaagcaaacaaagagg	9	15	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55039696	A	A	55039696	1	1	74	0	1	0	0	0	0	0	0	0	7069	638	22	2		2	HCRTR2	6	55039696	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3265476	55039696	116075371	568	81022											
ZNF451	26036	broad.mit.edu	37	chr6	57018646	57018646	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttatcaacctgtgccattTgttctaacttaggctggccg	8	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57018646	G	G	57018646	1	3	74	0	1	0	0	0	0	0	0	0	18049	1827	63	5		5	ZNF451	6	57018646	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1978950	57018646	114096421	569	81023											
KHDRBS2	202559	broad.mit.edu	37	chr6	62757888	62757888	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtccaagcaatttcccCacaaaattgaactaggaaac	6	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62757888	A	A	62757888	2	1	74	1	0	0	0	0	0	0	0	1	8217	581	21	2		2	KHDRBS2	6	62757888	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5739242	62757888	108357179	570	81024											
EYS	346007	broad.mit.edu	37	chr6	66013288	66013288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacgaaaattttcgacaGgcggtgacagtgatcctcca	11	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66013288	T	T	66013288	1	4	74	0	1	0	0	0	0	0	0	0	5375	1015	35	2		2	EYS	6	66013288	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3255400	66013288	105101779	571	81025											
EYS	346007	broad.mit.edu	37	chr6	66115184	66115184	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcataagtataagcagaActgctatttgggcaaattcc	7	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66115184	C	C	66115184	3	2	74	1	0	0	0	0	1	0	0	0	5375	40	2	5	8609	5	EYS	6	66115184	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	101896	66115184	104999883	572	81026											
LMBRD1	55788	broad.mit.edu	37	chr6	70386465	70386465	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaaagactatggtgagaTaggttctttcataaaattga	8	3	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70386465	C	C	70386465	1	2	74	0	1	0	0	0	0	0	0	0	8916	1421	49	5		5	LMBRD1	6	70386465	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4271281	70386465	100728602	573	81027											
COL9A1	1297	broad.mit.edu	37	chr6	70981386	70981386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacacggccaagctctccaGggagtcctgctgtcccagga	11	15	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70981386	T	T	70981386	3	4	74	1	0	0	0	0	1	0	0	0	3739	1000	35	2	1750	2	COL9A1	6	70981386	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	594921	70981386	100133681	574	81028											
SH3BGRL2	83699	broad.mit.edu	37	chr6	80406313	80406313	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttcttattcttgttttaGaattcatctcttttgaattt	3	6	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80406313	T	T	80406313	1	4	74	0	1	0	0	0	0	0	0	0	14355	957	33	3		3	SH3BGRL2	6	80406313	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	9424927	80406313	90708754	575	81029											
TTK	7272	broad.mit.edu	37	chr6	80715696	80715696	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatttctgctgatactAcaggtgagtttttcttttct	6	6	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80715696	G	G	80715696	3	3	74	1	0	0	0	0	1	0	0	0	16846	391	14	5	138	5	TTK	6	80715696	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	309383	80715696	90399371	576	81030											
DOPEY1	23033	broad.mit.edu	37	chr6	83858407	83858407	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattgtctataaaaatttaGagaatgttccacaaactagt	5	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83858407	T	T	83858407	1	4	74	0	1	0	0	0	0	0	0	0	4747	957	33	3		3	DOPEY1	6	83858407	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3142711	83858407	87256660	577	81031											
KIAA1009	22832	broad.mit.edu	37	chr6	84870494	84870494	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaaaatgcactatataTaaaatatgctcatgaaaatt	3	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84870494	A	A	84870494	1	1	74	0	1	0	0	0	0	0	0	0	8273	1421	49	5		5	KIAA1009	6	84870494	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1012087	84870494	86244573	578	81032											
NT5E	4907	broad.mit.edu	37	chr6	86203724	86203724	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgttttataccaatagcCaaaaattctccttgccttta	3	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86203724	A	A	86203724	1	1	74	0	1	0	0	0	0	0	0	0	10788	609	21	2		2	NT5E	6	86203724	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1333230	86203724	84911343	579	81033											
SNX14	57231	broad.mit.edu	37	chr6	86215638	86215638	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagtaaatttctaccaccctCgcacagcagaaatttcaatg	5	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86215638	G	G	86215638	1	3	74	0	1	0	0	0	0	0	0	0	14999	899	31	4		4	SNX14	6	86215638	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	11914	86215638	84899429	580	81034											
SPACA1	81833	broad.mit.edu	37	chr6	88776086	88776086	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atataacaaaccaaaggataTtacagaatattagattcatt	4	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88776086	C	C	88776086	1	2	74	0	1	0	0	0	0	0	0	0	15086	1508	52	5		5	SPACA1	6	88776086	3'UTR	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2560448	88776086	82338981	581	81035											
RNGTT	8732	broad.mit.edu	37	chr6	89324082	89324082	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatttgcattctataatTttgttgtcatactgtttcag	5	6	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89324082	A	A	89324082	3	1	74	1	0	0	0	0	1	0	0	0	13614	1838	64	5	262	5	RNGTT	6	89324082	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	547996	89324082	81790985	582	81036											
GABRR2	2570	broad.mit.edu	37	chr6	90012568	90012568	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcccaccccccagcctcaaGatgtcttccaccctcatcag	4	20	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90012568	C	C	90012568	1	2	74	0	1	0	0	0	0	0	0	0	6237	957	33	4		4	GABRR2	6	90012568	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	688486	90012568	81102499	583	81037											
MDN1	23195	broad.mit.edu	37	chr6	90437507	90437507	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaaaggatgactgctcctCacacacatgatcaccgtctt	8	12	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90437507	A	A	90437507	1	1	74	0	1	0	0	0	0	0	0	0	9508	841	29	3		3	MDN1	6	90437507	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	424939	90437507	80677560	584	81038											
FUT9	10690	broad.mit.edu	37	chr6	96651790	96651790	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaatccacaaggattacatCacggaaaagctatacaatgc	6	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96651790	A	A	96651790	2	1	74	1	0	0	0	0	0	0	0	1	6171	816	29	3		3	FUT9	6	96651790	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6214283	96651790	74463277	585	81039											
FUT9	10690	broad.mit.edu	37	chr6	96651918	96651918	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagattataactctcccaGtgagctagcaaagtatctga	9	8	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96651918	A	A	96651918	3	1	74	1	0	0	0	0	1	0	0	0	6171	1029	36	4	889	4	FUT9	6	96651918	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	128	96651918	74463149	586	81040											
GRIK2	2898	broad.mit.edu	37	chr6	102074322	102074322	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagctcatcagcaaacgcAgtgcagtccatctgcaatgc	8	14	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102074322	T	T	102074322	2	4	74	1	0	0	0	0	0	0	0	1	6840	175	7	5		5	GRIK2	6	102074322	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5422404	102074322	69040745	587	81041											
GRIK2	2898	broad.mit.edu	37	chr6	102483424	102483424	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatagactctaaaggttatgGcgttggcactcccatgggta	11	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102483424	C	C	102483424	3	2	74	1	0	0	0	0	1	0	0	0	6840	1203	42	4	2348	4	GRIK2	6	102483424	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	409102	102483424	68631643	588	81042											
HACE1	57531	broad.mit.edu	37	chr6	105232265	105232265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaggaaaggctagcagGgtactccacaaacccagaaa	11	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105232265	T	T	105232265	1	4	74	0	1	0	0	0	0	0	0	0	7006	1247	43	2		2	HACE1	6	105232265	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2748841	105232265	65882802	589	81043											
AIM1	202	broad.mit.edu	37	chr6	106975228	106975228	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagggcactccatccccttAgaagaaggagaattggaact	11	9	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106975228	G	G	106975228	2	3	74	1	0	0	0	0	0	0	0	1	430	417	15	5		5	AIM1	6	106975228	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1742963	106975228	64139839	590	81044											
SOBP	55084	broad.mit.edu	37	chr6	107956353	107956353	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaccggcggtgagcgagctaGagtcggtcaaggagaataac	15	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107956353	C	C	107956353	3	2	74	1	0	0	0	0	1	0	0	0	15026	943	33	4	2327	4	SOBP	6	107956353	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	981125	107956353	63158714	591	81045											
SEC63	11231	broad.mit.edu	37	chr6	108250766	108250766	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaccatttttcacaagTgaaggtaaaaccagctaact	5	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108250766	C	C	108250766	1	2	74	0	1	0	0	0	0	0	0	0	14118	1711	59	5		5	SEC63	6	108250766	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	294413	108250766	62864301	592	81046											
ARMC2	84071	broad.mit.edu	37	chr6	109286055	109286056	+	Intron	DNP	GG	TT	TT													ccacttaaatttatagataaGgaattattttaagtgatcac							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	109286056	TT	TT	109286055	1	4	74	0	1	0	0	0	0	0	0	0	955	1015	35	2		2	ARMC2	6	109286055	Intron	DNP	GG	TCGA-17-Z045-01A-01W-0746-08	1035289	109286055	61829012	593	81047											
FYN	2534	broad.mit.edu	37	chr6	112020718	112020718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtgccctctgccttacCaagccacacttcagcgaaac	6	15	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112020718	A	A	112020718	1	1	74	0	1	0	0	0	0	0	0	0	6186	608	21	2		2	FYN	6	112020718	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2734663	112020718	59094349	594	81048											
RFX6	222546	broad.mit.edu	37	chr6	117248703	117248703	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctaattcaccaaatgGtattgatatttaaaagaatt	5	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117248703	A	A	117248703	5	1	74	1	0	0	0	0	0	0	1	0	13375	1275	44	4	2465	4	RFX6	6	117248703	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5227985	117248703	53866364	595	81049											
ROS1	6098	broad.mit.edu	37	chr6	117653546	117653546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagagacttagactgccaCgcaatagtagtgggaaactt	10	8	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117653546	A	A	117653546	1	1	74	0	1	0	0	0	0	0	0	0	13642	551	19	3		3	ROS1	6	117653546	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	404843	117653546	53461521	596	81050											
TPD52L1	7164	broad.mit.edu	37	chr6	125575106	125575106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttaaatctagtctttcctGtgtgatccaagacaagtgac	8	9	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125575106	T	T	125575106	1	4	74	0	1	0	0	0	0	0	0	0	16522	1392	48	3		3	TPD52L1	6	125575106	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	7921560	125575106	45539961	597	81051											
LAMA2	3908	broad.mit.edu	37	chr6	129725087	129725087	+	Frame_Shift_Del	DEL	C	-	-													aagaagccaaagatcttgcaCatgaagctacaaaactggta							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129725087	-	-	129725087	7	5	74	1	0	1	0	1	0	0	0	0	8678	478	17	0	6006	0	LAMA2	6	129725087	Frame_Shift_Del	DEL	C	TCGA-17-Z045-01A-01W-0746-08	4149981	129725087	41389980	598	81052											
ENPP1	5167	broad.mit.edu	37	chr6	132171233	132171233	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttagattaccaggagacGtgcatagaaccaggtaagga	12	6	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132171233	T	T	132171233	2	4	74	1	0	0	0	0	0	0	0	1	5171	1132	40	3		3	ENPP1	6	132171233	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2446146	132171233	38943834	599	81053											
TAAR6	319100	broad.mit.edu	37	chr6	132891786	132891786	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtttttgtactttccacaCctgctgtgatgtggcatttt	9	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132891786	T	T	132891786	3	4	74	1	0	0	0	0	1	0	0	0	15611	507	18	4	328	4	TAAR6	6	132891786	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	720553	132891786	38223281	600	81054											
VNN2	8875	broad.mit.edu	37	chr6	133072510	133072510	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaatggtttgatggtgGtggcgtaggcattccaatta	14	5	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133072510	A	A	133072510	3	1	74	1	0	0	0	0	1	0	0	0	17310	1261	44	4	600	4	VNN2	6	133072510	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	180724	133072510	38042557	601	81055											
SGK1	6446	broad.mit.edu	37	chr6	134583133	134583133	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagggagaacccctctttGgaaagcatgttcacccaggc	11	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134583133	C	C	134583133	3	2	74	1	0	0	0	0	1	0	0	0	14320	1357	47	4	1775	4	SGK1	6	134583133	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1510623	134583133	36531934	602	81056											
ECT2L	345930	broad.mit.edu	37	chr6	139197684	139197684	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgatttaaattttgaagcaCtgattaatctggtaagctat	7	4	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139197684	G	G	139197684	3	3	74	1	0	0	0	0	1	0	0	0	4942	564	20	4	1700	4	ECT2L	6	139197684	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4614551	139197684	31917383	603	81057											
TXLNB	167838	broad.mit.edu	37	chr6	139564275	139564275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcttgatccacagagacGtttgactctggctcttcatc	7	12	4	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139564275	T	T	139564275	3	4	74	1	0	0	0	0	1	0	0	0	16914	1136	40	3	615	3	TXLNB	6	139564275	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	366591	139564275	31550792	604	81058											
HIVEP2	3097	broad.mit.edu	37	chr6	143081224	143081224	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgggagataaatctccTttgggtatcagatacctctt	8	10	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143081224	C	C	143081224	2	2	74	1	0	0	0	0	0	0	0	1	7254	1606	56	5		5	HIVEP2	6	143081224	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3516949	143081224	28033843	605	81059											
UTRN	7402	broad.mit.edu	37	chr6	144811417	144811417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagaattgattacttggGcaccgtttgtattctttgtg	10	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144811417	T	T	144811417	1	4	74	0	1	0	0	0	0	0	0	0	17230	1218	42	3		3	UTRN	6	144811417	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1730193	144811417	26303650	606	81060											
SHPRH	257218	broad.mit.edu	37	chr6	146240474	146240474	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccttttctgtgatttactTgccaattacctcatgtggtt	6	10	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146240474	A	A	146240474	1	1	74	0	1	0	0	0	0	0	0	0	14404	1827	63	5		5	SHPRH	6	146240474	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1429057	146240474	24874593	607	81061											
STXBP5	134957	broad.mit.edu	37	chr6	147637559	147637559	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaagtaagttataaaaaaCtacagaggagttttggatat	8	2	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147637559	T	T	147637559	1	4	74	0	1	0	0	0	0	0	0	0	15474	580	20	4		4	STXBP5	6	147637559	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1397085	147637559	23477508	608	81062											
TAB2	23118	broad.mit.edu	37	chr6	149730865	149730865	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatttctgagccaaatggCcctgtatcttctctaaaacc	7	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149730865	T	T	149730865	1	4	74	0	1	0	0	0	0	0	0	0	15615	754	26	4		4	TAB2	6	149730865	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2093306	149730865	21384202	609	81063											
SYNE1	23345	broad.mit.edu	37	chr6	152563652	152563652	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcatatgaactatgaacgCaccaagcccgagacccaacc	7	14	0	3	rs147432636	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152563652	T	T	152563652	1	4	74	0	1	0	0	0	0	0	0	0	15564	725	25	4		4	SYNE1	6	152563652	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2832787	152563652	18551415	610	81064											
TIAM2	26230	broad.mit.edu	37	chr6	155450889	155450889	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtttaagggtcgagttcCacaatggtggcaaccccagc	13	10	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155450889	G	G	155450889	3	3	74	1	0	0	0	0	1	0	0	0	16014	594	21	4	534	4	TIAM2	6	155450889	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2887237	155450889	15664178	611	81065											
NOX3	50508	broad.mit.edu	37	chr6	155774779	155774779	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattagtcaaacaggcaaatCaaaaggttattagttgcttt	7	6	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155774779	A	A	155774779	1	1	74	0	1	0	0	0	0	0	0	0	10652	841	29	3		3	NOX3	6	155774779	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	323890	155774779	15340288	612	81066											
SNX9	51429	broad.mit.edu	37	chr6	158288741	158288741	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccggtaagagaactgtacAttcgagtctgattgtcccat	9	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158288741	G	G	158288741	1	3	74	0	1	0	0	0	0	0	0	0	15023	232	8	5		5	SNX9	6	158288741	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2513962	158288741	12826326	613	81067											
TMEM181	57583	broad.mit.edu	37	chr6	159010620	159010620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagttctgcccatctgctGttgaaacgtgttacttcatg	9	9	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159010620	T	T	159010620	1	4	74	0	1	0	0	0	0	0	0	0	16223	1392	48	3		3	TMEM181	6	159010620	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	721879	159010620	12104447	614	81068											
IGF2R	3482	broad.mit.edu	37	chr6	160431823	160431823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcaaataaggaggtaacAtgggaacttcaaattacatg	9	5	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160431823	G	G	160431823	1	3	74	0	1	0	0	0	0	0	0	0	7646	232	8	5		5	IGF2R	6	160431823	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1421203	160431823	10683244	615	81069											
IGF2R	3482	broad.mit.edu	37	chr6	160494822	160494822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaatggaagctctattGttgacttgtctccccttatt	9	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160494822	T	T	160494822	3	4	74	1	0	0	0	0	1	0	0	0	7646	1377	48	3	5119	3	IGF2R	6	160494822	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	62999	160494822	10620245	616	81070											
LPA	4018	broad.mit.edu	37	chr6	161032568	161032568	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcagttggccctttattcTcttatggtaaagaacaaaga	7	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161032568	C	C	161032568	1	2	74	0	1	0	0	0	0	0	0	0	8990	1566	54	5		5	LPA	6	161032568	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	537746	161032568	10082499	617	81071											
QKI	9444	broad.mit.edu	37	chr6	163983052	163983052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaagatgcagctgatGgagcttgcgattctgaatgg	14	6	1	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163983052	T	T	163983052	3	4	74	1	0	0	0	0	1	0	0	0	12981	1348	47	2	603	2	QKI	6	163983052	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2950484	163983052	7132015	618	81072											
C6orf118	168090	broad.mit.edu	37	chr6	165703510	165703510	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcttttcaaccttctcAgtaagagtaagtcggttttc	6	10	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165703510	T	T	165703510	2	4	74	1	0	0	0	0	0	0	0	1	2346	175	7	5		5	C6orf118	6	165703510	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1720458	165703510	5411557	619	81073											
PDE10A	10846	broad.mit.edu	37	chr6	165863795	165863795	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcctgtgtccaaccgtTgttctatatagctgtttagt	7	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165863795	C	C	165863795	3	2	74	1	0	0	0	0	1	0	0	0	11724	1812	63	5	2164	5	PDE10A	6	165863795	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	160285	165863795	5251272	620	81074											
PDE10A	10846	broad.mit.edu	37	chr6	165989859	165989859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgtctatctgaatgtcCcttctaaatttcttttgctg	5	10	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165989859	A	A	165989859	1	1	74	0	1	0	0	0	0	0	0	0	11724	638	22	2		2	PDE10A	6	165989859	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	126064	165989859	5125208	621	81075											
TCP10L2	401285	broad.mit.edu	37	chr6	167590680	167590680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttctgtacccaaacacaCacatcccatcagctcctcac	3	18	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167590680	A	A	167590680	1	1	74	0	1	0	0	0	0	0	0	0	15834	493	17	3		3	TCP10L2	6	167590680	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1600821	167590680	3524387	622	81076											
TTLL2	83887	broad.mit.edu	37	chr6	167754758	167754758	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgactgtcttccttatgattCtctttcgttcacaagcagaa	6	10	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167754758	T	T	167754758	3	4	74	1	0	0	0	0	1	0	0	0	16853	913	32	4	1380	4	TTLL2	6	167754758	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	164078	167754758	3360309	623	81077											
MLLT4	4301	broad.mit.edu	37	chr6	168352880	168352880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgagggtaaaggggggaGtgctttggctgtgcccatct	18	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168352880	T	T	168352880	1	4	74	0	1	0	0	0	0	0	0	0	9722	1029	36	3		3	MLLT4	6	168352880	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	598122	168352880	2762187	624	81078											
PRKAR1B	5575	broad.mit.edu	37	chr7	751061	751061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtctttgaggacctgctGgatcccgtgcagctgcacgt	12	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	751061	T	T	751061	3	4	74	1	0	0	0	0	1	0	0	0	12610	1357	47	2	1103	2	PRKAR1B	7	751061	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08		751061	158387602	625	81079											
MMD2	221938	broad.mit.edu	37	chr7	4947178	4947178	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaagaagaccatgcccAggcagtagaagacccctccg	10	13	1	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4947178	T	T	4947178	3	4	74	1	0	0	0	0	1	0	0	0	9737	188	7	5	154	5	MMD2	7	4947178	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	4196117	4947178	154191485	626	81080											
FSCN1	6624	broad.mit.edu	37	chr7	5642887	5642887	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaggcctcctctctgcaGgtatggacctgtctgccaat	9	15	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5642887	A	A	5642887	5	1	74	1	0	0	0	0	0	0	1	0	6127	1014	35	4	838	4	FSCN1	7	5642887	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	695709	5642887	153495776	627	81081											
RSPH10B2	728194	broad.mit.edu	37	chr7	5967760	5967760	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttggtcctgatgcgttcTggcagctacggaagacagga	13	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5967760	C	C	5967760	1	2	74	0	1	0	0	0	0	0	0	0	13815	1595	55	5		5	RSPH10B2	7	5967760	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	324873	5967760	153170903	628	81082											
PMS2	5395	broad.mit.edu	37	chr7	6029498	6029498	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcactatcaaacattcctatCaaagaggtctttaaaactgc	4	10	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6029498	G	G	6029498	3	3	74	1	0	0	0	0	1	0	0	0	12238	825	29	4	1535	4	PMS2	7	6029498	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	61738	6029498	153109165	629	81083											
TMEM106B	54664	broad.mit.edu	37	chr7	12254405	12254405	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtacttttttccctgaaGtttactgtaagatttttatt	5	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12254405	T	T	12254405	1	4	74	0	1	0	0	0	0	0	0	0	16144	1044	36	3		3	TMEM106B	7	12254405	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6224907	12254405	146884258	630	81084											
SCIN	85477	broad.mit.edu	37	chr7	12679964	12679964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttattccccctctccCccatcagatccgagtctccc	3	19	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12679964	A	A	12679964	1	1	74	0	1	0	0	0	0	0	0	0	14018	638	22	2		2	SCIN	7	12679964	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	425559	12679964	146458699	631	81085											
HDAC9	9734	broad.mit.edu	37	chr7	18633739	18633739	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctctagaagaaagtcaaaGgatttgagtcgtagataata	9	5	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18633739	A	A	18633739	1	1	74	0	1	0	0	0	0	0	0	0	7081	1015	35	4		4	HDAC9	7	18633739	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5953775	18633739	140504924	632	81086											
HDAC9	9734	broad.mit.edu	37	chr7	18687614	18687614	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcgacagcaaaagcttctTgtagctggtaattcattatg	9	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18687614	A	A	18687614	2	1	74	1	0	0	0	0	0	0	0	1	7081	1799	63	5		5	HDAC9	7	18687614	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	53875	18687614	140451049	633	81087											
HDAC9	9734	broad.mit.edu	37	chr7	19015514	19015514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaagaggagacagagacCgtttctgccctggcctccct	11	13	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19015514	A	A	19015514	2	1	74	1	0	0	0	0	0	0	0	1	7081	639	23	1		1	HDAC9	7	19015514	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	327900	19015514	140123149	634	81088											
ABCB5	340273	broad.mit.edu	37	chr7	20668260	20668260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgcttggTgtgtttgtttgttttacagt	15	2	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20668260	A	A	20668260	1	1	74	0	1	0	0	0	0	0	0	0	44	1711	59	5		5	ABCB5	7	20668260	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1652746	20668260	138470403	635	81089											
DNAH11	8701	broad.mit.edu	37	chr7	21934524	21934524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattggcattatctcctgCtgtggaagcccagcagtttg	12	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21934524	A	A	21934524	3	1	74	1	0	0	0	0	1	0	0	0	4639	797	28	3	13292	3	DNAH11	7	21934524	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1266264	21934524	137204139	636	81090											
DFNA5	1687	broad.mit.edu	37	chr7	24758610	24758610	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accacccaaagaggcccccaAccaaggtctccaggactgct	8	17	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24758610	T	T	24758610	1	4	74	0	1	0	0	0	0	0	0	0	4494	58	2	5		5	DFNA5	7	24758610	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2824086	24758610	134380053	637	81091											
CPVL	54504	broad.mit.edu	37	chr7	29135933	29135933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctctctgtgttacagggCtgtgactaaatcctacaaaa	7	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29135933	A	A	29135933	1	1	74	0	1	0	0	0	0	0	0	0	3867	812	28	3		3	CPVL	7	29135933	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4377323	29135933	130002730	638	81092											
SCRN1	9805	broad.mit.edu	37	chr7	29976411	29976411	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtggctcacgcctgtaatcCcagcactttgggaggccgag	14	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29976411	G	G	29976411	1	3	74	0	1	0	0	0	0	0	0	0	14051	638	22	4		4	SCRN1	7	29976411	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	840478	29976411	129162252	639	81093											
AQP1	358	broad.mit.edu	37	chr7	30932244	30932244	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaataggacagggataaaCagagggactggggactaggt	16	5	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30932244	T	T	30932244	1	4	74	0	1	0	0	0	0	0	0	0	823	493	17	4		4	AQP1	7	30932244	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	955833	30932244	128206419	640	81094											
C7orf16	10842	broad.mit.edu	37	chr7	31735334	31735334	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatattcaggtattttaAagtaatttgtgcactcccca	5	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31735334	C	C	31735334	1	2	74	0	1	0	0	0	0	0	0	0	2403	29	1	5		5	C7orf16	7	31735334	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	803090	31735334	127403329	641	81095											
BMPER	168667	broad.mit.edu	37	chr7	33945219	33945219	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgccagggattccctccaGgtgacgatgctctggttctc	12	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33945219	T	T	33945219	1	4	74	1	0	0	0	0	0	0	0	0	1474	1015	35	2		2	BMPER	7	33945219	Translation_Start_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2209885	33945219	125193444	642	81096											
AOAH	313	broad.mit.edu	37	chr7	36552770	36552770	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagagtcctttgggcctgtGacgtggcagcccccataggg	15	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36552770	T	T	36552770	1	4	74	0	1	0	0	0	0	0	0	0	728	1277	45	3		3	AOAH	7	36552770	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2607551	36552770	122585893	643	81097											
ELMO1	9844	broad.mit.edu	37	chr7	36909933	36909933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctataaaggagggctaGgctggctgcagttgccgacc	14	10	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36909933	T	T	36909933	1	4	74	0	1	0	0	0	0	0	0	0	5107	1015	35	2		2	ELMO1	7	36909933	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	357163	36909933	122228730	644	81098											
STARD3NL	83930	broad.mit.edu	37	chr7	38247335	38247335	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gataatagagttaaatgtaaGttggtggttctttcataact	9	3	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38247335	A	A	38247335	1	1	74	0	1	0	0	0	0	0	0	0	15376	1044	36	4		4	STARD3NL	7	38247335	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1337402	38247335	120891328	645	81099											
INHBA	3624	broad.mit.edu	37	chr7	41729364	41729365	+	Frame_Shift_Ins	INS	-	T	T													ttggtgggcacacagcacgaINStttgaggttggcaaaggggc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41729365	T	T	41729364	7	5	74	1	0	1	1	0	0	0	0	0	7811	333	12	0	119	0	INHBA	7	41729364	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	3482029	41729364	117409299	646	81100											
SPDYE1	285955	broad.mit.edu	37	chr7	44041040	44041040	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cactcatgagggacacttagGagacaatagaggactaggct	12	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44041040	C	C	44041040	1	2	74	0	1	0	0	0	0	0	0	0	15145	1189	41	4		4	SPDYE1	7	44041040	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2311676	44041040	115097623	647	81101											
ADCY1	107	broad.mit.edu	37	chr7	45724694	45724694	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctccagcttgtggcatgcGctggggcgggagagggcatg	18	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45724694	C	C	45724694	1	2	74	0	1	0	0	0	0	0	0	0	292	1102	38	4		4	ADCY1	7	45724694	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1683654	45724694	113413969	648	81102											
PKD1L1	168507	broad.mit.edu	37	chr7	47924193	47924193	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcaggcatagaagcacagtCacctggctgtcttcctcccg	10	14	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47924193	A	A	47924193	1	1	74	0	1	0	0	0	0	0	0	0	12059	841	29	3		3	PKD1L1	7	47924193	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2199499	47924193	111214470	649	81103											
SUN3	256979	broad.mit.edu	37	chr7	48046872	48046872	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcaggacatctatttgttCgatcaaaaatagaatttgac	6	7	3	2	rs145833872		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48046872	A	A	48046872	4	1	74	1	0	0	0	0	0	1	0	0	15511	893	31	3	715	3	SUN3	7	48046872	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	122679	48046872	111091791	650	81104											
ABCA13	154664	broad.mit.edu	37	chr7	48313592	48313592	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtaacttgggtgttaaaTataaaaaaacctctttgttc	6	5	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48313592	C	C	48313592	2	2	74	1	0	0	0	0	0	0	0	1	31	1403	49	5		5	ABCA13	7	48313592	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	266720	48313592	110825071	651	81105											
ABCA13	154664	broad.mit.edu	37	chr7	48626907	48626907	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtagaagaatgtcaatatCttggagtaagatacatattg	10	3	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48626907	T	T	48626907	1	4	74	0	1	0	0	0	0	0	0	0	31	928	32	4		4	ABCA13	7	48626907	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	313315	48626907	110511756	652	81106											
VWC2	375567	broad.mit.edu	37	chr7	49951783	49951783	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgcaggcaaatgtagaCgcttcccagaacacaaactc	8	11	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49951783	T	T	49951783	1	4	74	0	1	0	0	0	0	0	0	0	17370	551	19	4		4	VWC2	7	49951783	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1324876	49951783	109186880	653	81107											
IKZF1	10320	broad.mit.edu	37	chr7	50459442	50459442	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttagtcattaaagaagaaaCtaatcacagtgaaatggcag	8	5	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50459442	G	G	50459442	3	3	74	1	0	0	0	0	1	0	0	0	7684	565	20	4	753	4	IKZF1	7	50459442	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	507659	50459442	108679221	654	81108											
ZNF479	90827	broad.mit.edu	37	chr7	57193859	57193859	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagtaacatagatcatgctGaattctttaattaccaaatt	4	6	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57193859	T	T	57193859	1	4	74	0	1	0	0	0	0	0	0	0	18060	1305	45	3		3	ZNF479	7	57193859	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6734417	57193859	101944804	655	81109											
ZNF716	441234	broad.mit.edu	37	chr7	57510044	57510044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagaaatggtgagtgctgGgtctgtcaccgtgagagagg	17	7	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57510044	T	T	57510044	1	4	74	0	1	0	0	0	0	0	0	0	18247	1247	43	2		2	ZNF716	7	57510044	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	316185	57510044	101628619	656	81110											
ZNF727	442319	broad.mit.edu	37	chr7	63529350	63529350	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actctgctcagcagcgtttgTatagggatgtgatgttagag	13	6	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63529350	C	C	63529350	3	2	74	1	0	0	0	0	1	0	0	0	18251	1638	57	5	91	5	ZNF727	7	63529350	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	6019306	63529350	95609313	657	81111											
MLXIPL	51085	broad.mit.edu	37	chr7	73010750	73010750	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgggggagagacacggaCgctcagagtcccagggcctg	17	11	1	2	rs140888200		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73010750	G	G	73010750	3	3	74	1	0	0	0	0	1	0	0	0	9730	536	19	4	700	4	MLXIPL	7	73010750	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9481400	73010750	86127913	658	81112											
CLIP2	7461	broad.mit.edu	37	chr7	73731800	73731800	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatgtgatctctcctgtctCtgcccgcaggtgagtgaaga	12	10	2	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73731800	T	T	73731800	1	4	74	0	1	0	0	0	0	0	0	0	3565	928	32	4		4	CLIP2	7	73731800	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	721050	73731800	85406863	659	81113											
CLIP2	7461	broad.mit.edu	37	chr7	73753320	73753320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaaaaggacctgcgcctgGgggaccgcgtgctggtgagt	18	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73753320	T	T	73753320	3	4	74	1	0	0	0	0	1	0	0	0	3565	1232	43	2	670	2	CLIP2	7	73753320	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	21520	73753320	85385343	660	81114											
HIP1	3092	broad.mit.edu	37	chr7	75191462	75191462	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagatgtcatcaaacttgtTgtcaaataaattctgtggtt	7	5	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75191462	A	A	75191462	3	1	74	1	0	0	0	0	1	0	0	0	7181	1812	63	5	2160	5	HIP1	7	75191462	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1438142	75191462	83947201	661	81115											
FGL2	10875	broad.mit.edu	37	chr7	76826210	76826210	+	Missense_Mutation	SNP	T	A	A													acagtaaacttcaaagctacTatttttgggatcaggtgtaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76826210	A	A	76826210	3	1	74	1	0	0	0	0	1	0	0	0	5930	1522	53	5	617	5	FGL2	7	76826210	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1634748	76826210	82312453	662	81116	369	2									
FGL2	10875	broad.mit.edu	37	chr7	76826219	76826219	+	Missense_Mutation	SNP	G	T	T													ttcaaagctactatttttggGatcaggtgtaactctgtagg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76826219	T	T	76826219	3	4	74	1	0	0	0	0	1	0	0	0	5930	1174	41	3	626	3	FGL2	7	76826219	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	9	76826219	82312444	663	81117	369	2									
MAGI2	9863	broad.mit.edu	37	chr7	77691641	77691641	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcatgtggggagggcctAtagagaggtccatggagtag	19	5	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77691641	G	G	77691641	1	3	74	0	1	0	0	0	0	0	0	0	9283	464	16	5		5	MAGI2	7	77691641	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	865422	77691641	81447022	664	81118											
GNAI1	2770	broad.mit.edu	37	chr7	79820453	79820453	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctccatcatcattaactcAttcacacaaatgcctcatgt	2	13	6	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79820453	T	T	79820453	1	4	74	0	1	0	0	0	0	0	0	0	6568	232	8	5		5	GNAI1	7	79820453	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2128812	79820453	79318210	665	81119											
CACNA2D1	781	broad.mit.edu	37	chr7	81624260	81624260	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatcttatttcgaatctaaGagtaaatgaaacaactactt	4	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81624260	T	T	81624260	1	4	74	0	1	0	0	0	0	0	0	0	2574	957	33	3		3	CACNA2D1	7	81624260	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1803807	81624260	77514403	666	81120											
PCLO	27445	broad.mit.edu	37	chr7	82387925	82387925	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggactgaccaaaagtttgTgccagttgactattcttttt	8	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82387925	G	G	82387925	3	3	74	1	0	0	0	0	1	0	0	0	11677	1696	59	5	37	5	PCLO	7	82387925	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	763665	82387925	76750738	667	81121											
PCLO	27445	broad.mit.edu	37	chr7	82595465	82595465	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttttttttcttcagggagTggctttttttcttgaagagc	10	5	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82595465	G	G	82595465	2	3	74	1	0	0	0	0	0	0	0	1	11677	1683	59	5		5	PCLO	7	82595465	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	207540	82595465	76543198	668	81122											
SEMA3A	10371	broad.mit.edu	37	chr7	83689838	83689838	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggactcttcccacggccgtTttcaaaatgtgagttctcca	8	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83689838	C	C	83689838	3	2	74	1	0	0	0	0	1	0	0	0	14137	1841	64	5	1877	5	SEMA3A	7	83689838	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1094373	83689838	75448825	669	81123											
SEMA3D	223117	broad.mit.edu	37	chr7	84628848	84628848	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatgtgcttccactttgGgccccccttgtttctctgtc	8	15	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84628848	A	A	84628848	3	1	74	1	0	0	0	0	1	0	0	0	14140	1232	43	4	95	4	SEMA3D	7	84628848	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	939010	84628848	74509815	670	81124											
SEMA3D	223117	broad.mit.edu	37	chr7	84642089	84642089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaaagcatatcagagcTgtacttactgtcttcgatgt	9	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84642089	A	A	84642089	1	1	74	0	1	0	0	0	0	0	0	0	14140	1595	55	5		5	SEMA3D	7	84642089	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	13241	84642089	74496574	671	81125											
SEMA3D	223117	broad.mit.edu	37	chr7	84727156	84727156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaagtcaaccagactgaGtagaaagatgtggtctttgg	12	5	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84727156	T	T	84727156	3	4	74	1	0	0	0	0	1	0	0	0	14140	1029	36	3	2120	3	SEMA3D	7	84727156	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	85067	84727156	74411507	672	81126											
ABCB1	5243	broad.mit.edu	37	chr7	87168572	87168572	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acatcccagggcacagccctCgatagacatacctgtctgag	9	14	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87168572	T	T	87168572	1	4	74	0	1	0	0	0	0	0	0	0	40	899	31	4		4	ABCB1	7	87168572	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2441416	87168572	71970091	673	81127											
AKAP9	10142	broad.mit.edu	37	chr7	91712887	91712887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaactgaaaccttaaagaGggaacactatgttgccgttc	9	8	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91712887	T	T	91712887	3	4	74	1	0	0	0	0	1	0	0	0	459	1000	35	2	8694	2	AKAP9	7	91712887	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4544315	91712887	67425776	674	81128											
PEX1	5189	broad.mit.edu	37	chr7	92136428	92136428	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaggaggatacgcctaaGgaattcactcctctgtaaaa	8	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92136428	A	A	92136428	2	1	74	1	0	0	0	0	0	0	0	1	11830	987	35	4		4	PEX1	7	92136428	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	423541	92136428	67002235	675	81129											
COL1A2	1278	broad.mit.edu	37	chr7	94054489	94054489	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgtggtcctcctggtgctGtgggtagtcctggagtcaac	14	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94054489	C	C	94054489	3	2	74	1	0	0	0	0	1	0	0	0	3710	1377	48	4	2900	4	COL1A2	7	94054489	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1918061	94054489	65084174	676	81130											
PON1	5444	broad.mit.edu	37	chr7	94935291	94935291	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtggaggagagggagaTcagaagaaaggcaggaaggg	21	2	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94935291	C	C	94935291	1	2	74	0	1	0	0	0	0	0	0	0	12343	1450	50	5		5	PON1	7	94935291	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	880802	94935291	64203372	677	81131											
TRRAP	8295	broad.mit.edu	37	chr7	98591099	98591099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcccatgggtcctgcagcGctccgagccctggcgtctgt	14	15	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98591099	T	T	98591099	1	4	74	0	1	0	0	0	0	0	0	0	16726	1102	38	3		3	TRRAP	7	98591099	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3655808	98591099	60547564	678	81132											
ZAN	7455	broad.mit.edu	37	chr7	100334679	100334679	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccaccgtcactgtgccCgcagggttcaccctgcccac	8	20	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100334679	A	A	100334679	2	1	74	1	0	0	0	0	0	0	0	1	17640	639	23	1		1	ZAN	7	100334679	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1743580	100334679	58803984	679	81133											
MUC17	140453	broad.mit.edu	37	chr7	100678478	100678478	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaccagttcctctcctAcaaccgctgaaggtaccagc	7	15	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100678478	G	G	100678478	3	3	74	1	0	0	0	0	1	0	0	0	10068	391	14	5	3791	5	MUC17	7	100678478	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	343799	100678478	58460185	680	81134											
MUC17	140453	broad.mit.edu	37	chr7	100685357	100685357	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttaccagttctagtcaaGccagttcatctccagcaact	6	12	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100685357	C	C	100685357	3	2	74	1	0	0	0	0	1	0	0	0	10068	971	34	4	10670	4	MUC17	7	100685357	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6879	100685357	58453306	681	81135											
MUC17	140453	broad.mit.edu	37	chr7	100694842	100694842	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtctcagctccctgaggaCgcagaacaagcgtgtatgtg	12	11	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100694842	T	T	100694842	1	4	74	0	1	0	0	0	0	0	0	0	10068	551	19	4		4	MUC17	7	100694842	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9485	100694842	58443821	682	81136											
EMID2	136227	broad.mit.edu	37	chr7	101200760	101200760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtccttgctgccctgcttGggcccgaccctggacagaag	14	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200760	T	T	101200760	3	4	74	1	0	0	0	0	1	0	0	0	5134	1339	47	2	1319	2	EMID2	7	101200760	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	505918	101200760	57937903	683	81137											
CUX1	1523	broad.mit.edu	37	chr7	101882787	101882787	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaaagccatacccgtcAccaaaaaccatcgaagacct	5	15	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101882787	T	T	101882787	2	4	74	1	0	0	0	0	0	0	0	1	4097	146	6	5		5	CUX1	7	101882787	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	682027	101882787	57255876	684	81138											
SLC26A5	375611	broad.mit.edu	37	chr7	103018953	103018953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttccttagcgtacttccgCatggcctttctccttgctcc	6	16	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103018953	A	A	103018953	3	1	74	1	0	0	0	0	1	0	0	0	14634	710	25	3	566	3	SLC26A5	7	103018953	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1136166	103018953	56119710	685	81139											
RELN	5649	broad.mit.edu	37	chr7	103185706	103185706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacatctcctcacactgggGaccgatgtagacattatcaa	7	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103185706	T	T	103185706	3	4	74	1	0	0	0	0	1	0	0	0	13328	1174	41	3	4090	3	RELN	7	103185706	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	166753	103185706	55952957	686	81140											
LHFPL3	375612	broad.mit.edu	37	chr7	104310080	104310080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctggaacattcgagagCaaatcaaaacctctatccag	6	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104310080	A	A	104310080	1	1	74	0	1	0	0	0	0	0	0	0	8838	725	25	3		3	LHFPL3	7	104310080	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1124374	104310080	54828583	687	81141											
DLD	1738	broad.mit.edu	37	chr7	107557322	107557322	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccgacgaccctttactaAgaatttgggactagaagagc	11	9	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107557322	T	T	107557322	3	4	74	1	0	0	0	0	1	0	0	0	4591	72	3	5	997	5	DLD	7	107557322	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3247242	107557322	51581341	688	81142											
LAMB4	22798	broad.mit.edu	37	chr7	107688431	107688431	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggctttttggagggcattCgttgagagggtcagggagcc	18	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107688431	A	A	107688431	2	1	74	1	0	0	0	0	0	0	0	1	8685	871	31	3		3	LAMB4	7	107688431	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	131109	107688431	51450232	689	81143											
LAMB4	22798	broad.mit.edu	37	chr7	107704278	107704278	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagtttgcgccctgagtgtTgtgcaaacatcgaaggcact	12	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107704278	A	A	107704278	3	1	74	1	0	0	0	0	1	0	0	0	8685	1812	63	5	2348	5	LAMB4	7	107704278	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	15847	107704278	51434385	690	81144											
DOCK4	9732	broad.mit.edu	37	chr7	111423968	111423968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagcaattaatgaaacgcCactttcccgccatgtttccc	6	13	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111423968	A	A	111423968	3	1	74	1	0	0	0	0	1	0	0	0	4729	594	21	2	2538	2	DOCK4	7	111423968	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3719690	111423968	47714695	691	81145											
KCND2	3751	broad.mit.edu	37	chr7	119914579	119914579	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttacacctctggaccacGtttctcactagtactttgct	7	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119914579	T	T	119914579	1	4	74	0	1	0	0	0	0	0	0	0	8089	1160	40	3		3	KCND2	7	119914579	5'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8490611	119914579	39224084	692	81146											
ING3	54556	broad.mit.edu	37	chr7	120596228	120596228	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgcagcagcacttctaaaaGattgaaaacaccaagaagat	7	8	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120596228	A	A	120596228	1	1	74	0	1	0	0	0	0	0	0	0	7807	957	33	4		4	ING3	7	120596228	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	681649	120596228	38542435	693	81147											
HYAL4	23553	broad.mit.edu	37	chr7	123509015	123509015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacaattataacgtttatGccccaaactactctgggtca	6	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123509015	T	T	123509015	3	4	74	1	0	0	0	0	1	0	0	0	7536	1319	46	3	690	3	HYAL4	7	123509015	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2912787	123509015	35629648	694	81148											
IMPDH1	3614	broad.mit.edu	37	chr7	128035210	128035210	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggctccaagggccagggcCttgaccacgtgtcccacggt	14	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128035210	G	G	128035210	3	3	74	1	0	0	0	0	1	0	0	0	7796	680	24	4	439	4	IMPDH1	7	128035210	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4526195	128035210	31103453	695	81149											
FLNC	2318	broad.mit.edu	37	chr7	128477607	128477607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgcctatgggcctggtatGtgtgagcccctggcggccct	14	13	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128477607	T	T	128477607	1	4	74	0	1	0	0	0	0	0	0	0	5993	1392	48	3		3	FLNC	7	128477607	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	442397	128477607	30661056	696	81150											
FLNC	2318	broad.mit.edu	37	chr7	128482421	128482421	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtaaacgtgcccaagagccCcttccgggtgcgtcctcccg	11	17	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128482421	G	G	128482421	3	3	74	1	0	0	0	0	1	0	0	0	5993	623	22	4	2312	4	FLNC	7	128482421	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4814	128482421	30656242	697	81151											
FLNC	2318	broad.mit.edu	37	chr7	128487837	128487838	+	Frame_Shift_Ins	INS	-	C	C													gctgggggctggtgtcagggINScccgggttcctcagaccttc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128487838	C	C	128487837	7	5	74	1	0	1	1	0	0	0	0	0	5993	1203	42	0	4473	0	FLNC	7	128487837	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	5416	128487837	30650826	698	81152											
TNPO3	23534	broad.mit.edu	37	chr7	128632072	128632072	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggatcaacactctttgctaTagcagccatgataaagagaa	8	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128632072	C	C	128632072	3	2	74	1	0	0	0	0	1	0	0	0	16460	1406	49	5	1484	5	TNPO3	7	128632072	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	144235	128632072	30506591	699	81153											
FAM40B	57464	broad.mit.edu	37	chr7	129092951	129092951	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggcccctgtcatacctaTgtcagcctaattattaggca	9	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129092951	C	C	129092951	1	2	74	0	1	0	0	0	0	0	0	0	5612	1479	51	5		5	FAM40B	7	129092951	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	460879	129092951	30045712	700	81154											
PLXNA4	91584	broad.mit.edu	37	chr7	132186040	132186040	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacagcaacgaggaggacAgacatcaaggacagaaagaa	12	8	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132186040	C	C	132186040	1	2	74	0	1	0	0	0	0	0	0	0	12217	203	7	5		5	PLXNA4	7	132186040	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3093089	132186040	26952623	701	81155											
BPGM	669	broad.mit.edu	37	chr7	134346514	134346514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgtggaaagctcctgGcgtctaaatgagcgtcacta	12	10	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134346514	T	T	134346514	3	4	74	1	0	0	0	0	1	0	0	0	1497	1212	42	3	257	3	BPGM	7	134346514	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2160474	134346514	24792149	702	81156											
CALD1	800	broad.mit.edu	37	chr7	134480368	134480368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcccttccttccccctcCtccttttctttctttctctt	0	19	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134480368	A	A	134480368	1	1	74	0	1	0	0	0	0	0	0	0	2607	696	24	2		2	CALD1	7	134480368	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	133854	134480368	24658295	703	81157											
NUP205	23165	broad.mit.edu	37	chr7	135309964	135309964	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccgtggataaacagcagcAgtggcttttgtatctttcta	9	9	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135309964	G	G	135309964	3	3	74	1	0	0	0	0	1	0	0	0	10854	188	7	5	4658	5	NUP205	7	135309964	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	829596	135309964	23828699	704	81158											
AKR1D1	6718	broad.mit.edu	37	chr7	137791985	137791985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcttgatcttcccataCtacgagtaactctccattca	4	14	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137791985	A	A	137791985	1	1	74	0	1	0	0	0	0	0	0	0	473	580	20	3		3	AKR1D1	7	137791985	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2482021	137791985	21346678	705	81159											
KIAA1549	57670	broad.mit.edu	37	chr7	138601712	138601712	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccagtggcagcaccggtgCtggttgtgctcacttccgtg	13	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138601712	G	G	138601712	3	3	74	1	0	0	0	0	1	0	0	0	8314	797	28	4	3268	4	KIAA1549	7	138601712	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	809727	138601712	20536951	706	81160											
HIPK2	28996	broad.mit.edu	37	chr7	139258034	139258034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggtgcacagtgccgtggCtggggctgttgtgcgggaag	21	8	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139258034	A	A	139258034	3	1	74	1	0	0	0	0	1	0	0	0	7184	797	28	3	364	3	HIPK2	7	139258034	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	656322	139258034	19880629	707	81161											
MGAM	8972	broad.mit.edu	37	chr7	141730463	141730463	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagccatctccaacaactCttcctcaagtaaaccctatg	3	16	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141730463	G	G	141730463	3	3	74	1	0	0	0	0	1	0	0	0	9634	913	32	4	1418	4	MGAM	7	141730463	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2472429	141730463	17408200	708	81162											
TRPV5	56302	broad.mit.edu	37	chr7	142605666	142605666	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgggagtaaggtcaagagtGatagcgatgttaatcaaaaa	12	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142605666	A	A	142605666	1	1	74	0	1	0	0	0	0	0	0	0	16724	1305	45	4		4	TRPV5	7	142605666	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	875203	142605666	16532997	709	81163											
TRPV5	56302	broad.mit.edu	37	chr7	142626181	142626181	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgcacgatctcctcgctGttcacacaggcagcaaagga	10	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142626181	T	T	142626181	3	4	74	1	0	0	0	0	1	0	0	0	16724	1368	48	3	1711	3	TRPV5	7	142626181	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	20515	142626181	16512482	710	81164											
KEL	3792	broad.mit.edu	37	chr7	142649499	142649499	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggcatctaccatcacGgccccctccctgagagagag	13	14	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142649499	C	C	142649499	1	2	74	0	1	0	0	0	0	0	0	0	8212	1131	39	4		4	KEL	7	142649499	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	23318	142649499	16489164	711	81165											
CLCN1	1180	broad.mit.edu	37	chr7	143015398	143015398	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgatctcagctcaccgcaatCtccgcctccctggttcaagc	7	18	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143015398	T	T	143015398	1	4	74	0	1	0	0	0	0	0	0	0	3493	928	32	4		4	CLCN1	7	143015398	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	365899	143015398	16123265	712	81166											
CLCN1	1180	broad.mit.edu	37	chr7	143017866	143017866	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagctggagcatggactaCgtcagtgccaaaagccttca	11	11	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143017866	A	A	143017866	4	1	74	1	0	0	0	0	0	1	0	0	3493	547	19	3	421	3	CLCN1	7	143017866	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2468	143017866	16120797	713	81167											
CLCN1	1180	broad.mit.edu	37	chr7	143025408	143025408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccaaggacaaaggctGgggttgggcagagggacagg	20	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143025408	T	T	143025408	1	4	74	0	1	0	0	0	0	0	0	0	3493	1363	47	2		2	CLCN1	7	143025408	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	7542	143025408	16113255	714	81168											
OR2A25	392138	broad.mit.edu	37	chr7	143772060	143772060	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctctgtgtggttggactcTtttatggcacagccatcatc	9	11	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143772060	C	C	143772060	3	2	74	1	0	0	0	0	1	0	0	0	11072	1609	56	5	750	5	OR2A25	7	143772060	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	746652	143772060	15366603	715	81169											
OR2A12	346525	broad.mit.edu	37	chr7	143792345	143792345	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattatcctggggctcatcTacttggactctagactgcac	10	11	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143792345	C	C	143792345	3	2	74	1	0	0	0	0	1	0	0	0	11069	1522	53	5	147	5	OR2A12	7	143792345	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	20285	143792345	15346318	716	81170											
OR2A12	346525	broad.mit.edu	37	chr7	143792734	143792734	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatcaaccactttttctgTcaaatcatgtccgtattcaa	4	10	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143792734	C	C	143792734	2	2	74	1	0	0	0	0	0	0	0	1	11069	1673	58	5		5	OR2A12	7	143792734	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	389	143792734	15345929	717	81171											
TPK1	27010	broad.mit.edu	37	chr7	144365032	144365032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agattatgctaatcaccgatGgccaatgatgtaatcaatca	7	8	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144365032	A	A	144365032	1	1	74	0	1	0	0	0	0	0	0	0	16528	1363	47	4		4	TPK1	7	144365032	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	572298	144365032	14773631	718	81172											
CNTNAP2	26047	broad.mit.edu	37	chr7	147384830	147384830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaccaattatgggggaGgagcaaattaagagcatgag	13	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147384830	T	T	147384830	1	4	74	0	1	0	0	0	0	0	0	0	3679	1015	35	2		2	CNTNAP2	7	147384830	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3019798	147384830	11753833	719	81173											
CNTNAP2	26047	broad.mit.edu	37	chr7	148080900	148080900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagggcgagctggtggagtCcaactgcggggcctcgccgc	17	14	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148080900	A	A	148080900	3	1	74	1	0	0	0	0	1	0	0	0	3679	855	30	3	3721	3	CNTNAP2	7	148080900	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	696070	148080900	11057763	720	81174											
ZNF398	57541	broad.mit.edu	37	chr7	148851379	148851379	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagaacctgctgcgcaacAggaacttctggatcctgcgg	13	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148851379	T	T	148851379	3	4	74	1	0	0	0	0	1	0	0	0	18012	179	7	5	373	5	ZNF398	7	148851379	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	770479	148851379	10287284	721	81175											
GIMAP1	170575	broad.mit.edu	37	chr7	150417643	150417643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggccgagtgcgggggccGggtctgtgcctttgataacc	18	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150417643	T	T	150417643	3	4	74	1	0	0	0	0	1	0	0	0	6443	1116	39	1	557	1	GIMAP1	7	150417643	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1566264	150417643	8721020	722	81176											
AGAP3	116988	broad.mit.edu	37	chr7	150841002	150841002	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaccaacccctctgctgAgctgcaccgtagtcctagcc	9	17	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150841002	T	T	150841002	3	4	74	1	0	0	0	0	1	0	0	0	369	304	11	5	2845	5	AGAP3	7	150841002	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	423359	150841002	8297661	723	81177											
CRYGN	155051	broad.mit.edu	37	chr7	151135364	151135364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttacagagctcagggtcagGggcttctctccgtcagcgtt	13	11	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151135364	T	T	151135364	1	4	74	0	1	0	0	0	0	0	0	0	3950	1247	43	2		2	CRYGN	7	151135364	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	294362	151135364	8003299	724	81178											
HTR5A	3361	broad.mit.edu	37	chr7	154862699	154862699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcaaagacgacctgcgCcccagctcgcccctgctctc	9	20	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154862699	A	A	154862699	2	1	74	1	0	0	0	0	0	0	0	1	7520	726	26	3		3	HTR5A	7	154862699	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3727335	154862699	4275964	725	81179											
PTPRN2	5799	broad.mit.edu	37	chr7	157926395	157926395	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcacgatgtagccccgCgcctcttcctcggaaggctg	11	15	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157926395	G	G	157926395	2	3	74	1	0	0	0	0	0	0	0	1	12916	755	27	4		4	PTPRN2	7	157926395	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3063696	157926395	1212268	726	81180											
CSMD1	64478	broad.mit.edu	37	chr8	3253921	3253921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgcaaatatatacatcCcatcagaaaagacatgcaga	5	9	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3253921	A	A	3253921	1	1	74	0	1	0	0	0	0	0	0	0	3978	638	22	2		2	CSMD1	8	3253921	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08		3253921	143110101	727	81181											
SPAG11B	10407	broad.mit.edu	37	chr8	7315482	7315482	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgattcttacccagatgcTtatatttaggttggtgcaaa	8	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7315482	A	A	7315482	1	1	74	0	1	0	0	0	0	0	0	0	15093	1624	56	5		5	SPAG11B	8	7315482	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4061561	7315482	139048540	728	81182											
XKR6	286046	broad.mit.edu	37	chr8	10755724	10755724	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcaagcaagtgtcagccGtgagatcctcctgttgttcc	11	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10755724	A	A	10755724	3	1	74	1	0	0	0	0	1	0	0	0	17562	1145	40	4	265	4	XKR6	8	10755724	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3440242	10755724	135608298	729	81183											
MSR1	4481	broad.mit.edu	37	chr8	15998438	15998438	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttggaagtcagttgtgcaGatgacttgtccagaggtgaa	13	6	2	4	rs144128888	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15998438	T	T	15998438	1	4	74	0	1	0	0	0	0	0	0	0	9980	957	33	3		3	MSR1	8	15998438	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5242714	15998438	130365584	730	81184											
DOCK5	80005	broad.mit.edu	37	chr8	25216655	25216655	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgactgaagctgagcatcGtgagtccagggttctcttcc	11	10	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25216655	A	A	25216655	1	1	74	0	1	0	0	0	0	0	0	0	4730	1160	40	4		4	DOCK5	8	25216655	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	9218217	25216655	121147367	731	81185											
KIF13B	23303	broad.mit.edu	37	chr8	28980806	28980806	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactcttccattaaccgtagCacacgcaaaattcaagctaa	5	12	2	0	rs148930492	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28980806	G	G	28980806	1	3	74	0	1	0	0	0	0	0	0	0	8345	725	25	4		4	KIF13B	8	28980806	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3764151	28980806	117383216	732	81186											
UNC5D	137970	broad.mit.edu	37	chr8	35583890	35583890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacggcaagaatcattccagGacttttccccatggaaacaa	7	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35583890	T	T	35583890	3	4	74	1	0	0	0	0	1	0	0	0	17121	1165	41	3	1562	3	UNC5D	8	35583890	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6603084	35583890	110780132	733	81187											
TACC1	6867	broad.mit.edu	37	chr8	38695963	38695963	+	Intron	DEL	A	-	-													caaattgtaatagattgggtAaaactaagctttattgtact							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38695963	-	-	38695963	6	5	74	0	1	1	0	1	0	0	0	0	15620	377	13	0		0	TACC1	8	38695963	Intron	DEL	A	TCGA-17-Z045-01A-01W-0746-08	3112073	38695963	107668059	734	81188											
IKBKB	3551	broad.mit.edu	37	chr8	42172025	42172025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcttggctggccgtggtgGctcacacctgtaatcctaac	11	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42172025	T	T	42172025	1	4	74	0	1	0	0	0	0	0	0	0	7681	1218	42	3		3	IKBKB	8	42172025	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3476062	42172025	104191997	735	81189											
IKBKB	3551	broad.mit.edu	37	chr8	42186654	42186654	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttagtgaagaactggtGgctgaagcacataacctctg	10	8	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42186654	T	T	42186654	2	4	74	1	0	0	0	0	0	0	0	1	7681	1335	47	2		2	IKBKB	8	42186654	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	14629	42186654	104177368	736	81190											
SLC20A2	6575	broad.mit.edu	37	chr8	42302219	42302219	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccacacaaaaaaagcgaaCaggagggcgacaccaaagga	11	10	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42302219	G	G	42302219	2	3	74	1	0	0	0	0	0	0	0	1	14552	465	17	4		4	SLC20A2	8	42302219	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	115565	42302219	104061803	737	81191											
POTEA	340441	broad.mit.edu	37	chr8	43197382	43197382	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatgacataacatggccatCagaaatagcgtcagaggatt	10	7	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43197382	A	A	43197382	4	1	74	1	0	0	0	0	0	1	0	0	12356	838	29	3	1313	3	POTEA	8	43197382	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	895163	43197382	103166640	738	81192											
KIAA0146	23514	broad.mit.edu	37	chr8	48676524	48676524	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgatgggatgtgtgtgAtgtgtgtgtggtgtgtgtgt	20	0	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48676524	G	G	48676524	1	3	74	0	1	0	0	0	0	0	0	0	8227	348	12	5		5	KIAA0146	8	48676524	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5479142	48676524	97687498	739	81193											
SNTG1	54212	broad.mit.edu	37	chr8	51617247	51617247	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttctcagtggagctggaaAgtgacctcgcccagtgggaa	13	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51617247	G	G	51617247	3	3	74	1	0	0	0	0	1	0	0	0	14988	72	3	5	1180	5	SNTG1	8	51617247	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2940723	51617247	94746775	740	81194											
PXDNL	137902	broad.mit.edu	37	chr8	52325704	52325704	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaatctgtgtaaaataaatTcttactgtgaaaacaaatgt	5	5	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52325704	G	G	52325704	1	3	74	0	1	0	0	0	0	0	0	0	12956	1798	62	5		5	PXDNL	8	52325704	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	708457	52325704	94038318	741	81195											
PXDNL	137902	broad.mit.edu	37	chr8	52370045	52370045	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattgatagaactagaaaAtaatagttttacctggaaga	7	3	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52370045	C	C	52370045	1	2	74	0	1	0	0	0	0	0	0	0	12956	116	4	5		5	PXDNL	8	52370045	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	44341	52370045	93993977	742	81196											
PXDNL	137902	broad.mit.edu	37	chr8	52384858	52384858	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggctcaaaagtaattcggGggctctctgcaacaaaagaa	11	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52384858	A	A	52384858	3	1	74	1	0	0	0	0	1	0	0	0	12956	1232	43	4	3754	4	PXDNL	8	52384858	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	14813	52384858	93979164	743	81197											
ST18	9705	broad.mit.edu	37	chr8	53025846	53025846	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgttccagattgctgtacAtatctgtgagtgtatttaca	8	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53025846	G	G	53025846	3	3	74	1	0	0	0	0	1	0	0	0	15330	217	8	5	91	5	ST18	8	53025846	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	640988	53025846	93338176	744	81198											
TCEA1	6917	broad.mit.edu	37	chr8	54885078	54885078	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacattaattagcagtttgCaacatggactgggatagatt	9	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54885078	G	G	54885078	1	3	74	0	1	0	0	0	0	0	0	0	15789	725	25	4		4	TCEA1	8	54885078	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1859232	54885078	91478944	745	81199											
NKAIN3	286183	broad.mit.edu	37	chr8	63769469	63769469	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggatgctcatgtcaaaggGagtcaactcatctttactct	8	10	6	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63769469	A	A	63769469	1	1	74	0	1	0	0	0	0	0	0	0	10532	1189	41	4		4	NKAIN3	8	63769469	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8884391	63769469	82594553	746	81200											
DNAJC5B	85479	broad.mit.edu	37	chr8	67012238	67012238	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacacagctaatcaaagaagGatctcgaagttattgcacag	8	8	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67012238	C	C	67012238	3	2	74	1	0	0	0	0	1	0	0	0	4691	1174	41	4	586	4	DNAJC5B	8	67012238	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3242769	67012238	79351784	747	81201											
C8orf46	254778	broad.mit.edu	37	chr8	67425908	67425908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccccactgcctgtggcCtcccactgtcctgatccttc	8	19	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67425908	A	A	67425908	1	1	74	0	1	0	0	0	0	0	0	0	2457	696	24	2		2	C8orf46	8	67425908	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	413670	67425908	78938114	748	81202											
PREX2	80243	broad.mit.edu	37	chr8	69033345	69033345	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatcaatttaaaacccactAaaaccaaaagtttggtaatg	4	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69033345	G	G	69033345	1	3	74	0	1	0	0	0	0	0	0	0	12583	377	13	5		5	PREX2	8	69033345	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1607437	69033345	77330677	749	81203											
EYA1	2138	broad.mit.edu	37	chr8	72229803	72229803	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccttgcatctggtagctGtatggtgcctgtccaggttg	13	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72229803	A	A	72229803	2	1	74	1	0	0	0	0	0	0	0	1	5371	1372	48	4		4	EYA1	8	72229803	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3196458	72229803	74134219	750	81204											
CRISPLD1	83690	broad.mit.edu	37	chr8	75898537	75898537	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtttattcatgctttcagtCagcagtcttcatgctgttct	7	9	6	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75898537	T	T	75898537	1	4	74	0	1	0	0	0	0	0	0	0	3914	841	29	4		4	CRISPLD1	8	75898537	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3668734	75898537	70465485	751	81205											
ZFHX4	79776	broad.mit.edu	37	chr8	77761363	77761363	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caataaattctgtcatgaacAggtaaatactttttttcccc	4	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77761363	T	T	77761363	3	4	74	1	0	0	0	0	1	0	0	0	17761	202	7	5	3666	5	ZFHX4	8	77761363	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1862826	77761363	68602659	752	81206											
FAM164A	51101	broad.mit.edu	37	chr8	79609676	79609676	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttaaaaagtcaaattctcCtggaactgcatcatcaggat	6	9	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79609676	T	T	79609676	3	4	74	1	0	0	0	0	1	0	0	0	5523	681	24	4	561	4	FAM164A	8	79609676	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1848313	79609676	66754346	753	81207											
CNGB3	54714	broad.mit.edu	37	chr8	87679295	87679295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggaagacgaggcgcagtGgtataaaacagcagttccag	14	7	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87679295	T	T	87679295	3	4	74	1	0	0	0	0	1	0	0	0	3633	1348	47	2	1771	2	CNGB3	8	87679295	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8069619	87679295	58684727	754	81208											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885672	88885672	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggatctggaaactgcaaagCatgccaggccgacgcattcc	12	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88885672	G	G	88885672	3	3	74	1	0	0	0	0	1	0	0	0	4305	710	25	4	663	4	DCAF4L2	8	88885672	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1206377	88885672	57478350	755	81209											
MMP16	4325	broad.mit.edu	37	chr8	89180006	89180006	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaaaaatcctccctctcCatcaaagggagagctgtccc	7	15	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89180006	A	A	89180006	4	1	74	1	0	0	0	0	0	1	0	0	9748	603	21	2	1406	2	MMP16	8	89180006	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	294334	89180006	57184016	756	81210											
NBN	4683	broad.mit.edu	37	chr8	90976560	90976560	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatggtcacccctagcaagtAtatgagtaacgtatatttag	8	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90976560	G	G	90976560	1	3	74	0	1	0	0	0	0	0	0	0	10285	464	16	5		5	NBN	8	90976560	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1796554	90976560	55387462	757	81211											
NECAB1	64168	broad.mit.edu	37	chr8	91855435	91855435	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaacccacccccgtgattcGattacctcccactggatccc	5	18	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91855435	T	T	91855435	1	4	74	0	1	0	0	0	0	0	0	0	10399	1073	37	3		3	NECAB1	8	91855435	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	878875	91855435	54508587	758	81212											
SLC26A7	115111	broad.mit.edu	37	chr8	92406529	92406529	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggttgcctatcatttgcAaactgcttacttgtacaaca	8	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92406529	T	T	92406529	1	4	74	0	1	0	0	0	0	0	0	0	14636	145	5	5		5	SLC26A7	8	92406529	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	551094	92406529	53957493	759	81213											
TMEM67	91147	broad.mit.edu	37	chr8	94797464	94797464	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcagtgtgagattcctatCtctaagatcttaattgactt	6	7	3	3	rs5893258		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94797464	T	T	94797464	2	4	74	1	0	0	0	0	0	0	0	1	16319	903	32	4		4	TMEM67	8	94797464	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2390935	94797464	51566558	760	81214											
GDF6	392255	broad.mit.edu	37	chr8	97172676	97172676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcctggcggctcctgcGcccggggctgctgagcccgg	16	18	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97172676	T	T	97172676	3	4	74	1	0	0	0	0	1	0	0	0	6381	1087	38	3	1130	3	GDF6	8	97172676	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2375212	97172676	49191346	761	81215											
POP1	10940	broad.mit.edu	37	chr8	99162791	99162791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtcgcctaatgtcccaGgcgattttccagactgccct	10	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99162791	T	T	99162791	3	4	74	1	0	0	0	0	1	0	0	0	12346	1000	35	2	2031	2	POP1	8	99162791	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1990115	99162791	47201231	762	81216											
SNX31	169166	broad.mit.edu	37	chr8	101624205	101624205	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtgtcgtcaaacgcctcTgtcactttcagaacctactt	7	12	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101624205	C	C	101624205	1	2	74	0	1	0	0	0	0	0	0	0	15015	1595	55	5		5	SNX31	8	101624205	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2461414	101624205	44739817	763	81217											
SLC25A32	81034	broad.mit.edu	37	chr8	104413780	104413780	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacatctattacaccactgTaaaacatgtgttgatcctga	5	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104413780	C	C	104413780	3	2	74	1	0	0	0	0	1	0	0	0	14610	1638	57	5	179	5	SLC25A32	8	104413780	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2789575	104413780	41950242	764	81218											
DPYS	1807	broad.mit.edu	37	chr8	105456683	105456683	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctaaaaagacagcaggaAtgtgtatatgtgcaaggaag	11	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105456683	T	T	105456683	1	4	74	0	1	0	0	0	0	0	0	0	4786	116	4	5		5	DPYS	8	105456683	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1042903	105456683	40907339	765	81219											
ANGPT1	284	broad.mit.edu	37	chr8	108276357	108276357	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacttgctcttaagtttcctGaccataagatcatactcctt	5	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108276357	T	T	108276357	1	4	74	0	1	0	0	0	0	0	0	0	610	1305	45	3		3	ANGPT1	8	108276357	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2819674	108276357	38087665	766	81220											
PKHD1L1	93035	broad.mit.edu	37	chr8	110394616	110394616	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatagcctgcagtctggggCagtatttttcattaatacta	8	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110394616	A	A	110394616	1	1	74	0	1	0	0	0	0	0	0	0	12067	725	25	3		3	PKHD1L1	8	110394616	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2118259	110394616	35969406	767	81221											
PKHD1L1	93035	broad.mit.edu	37	chr8	110401413	110401413	+	Intron	SNP	C	T	T													tcatctttcttcataatgctCacagatgccttattctattt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110401413	T	T	110401413	1	4	74	0	1	0	0	0	0	0	0	0	12067	841	29	4		4	PKHD1L1	8	110401413	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6797	110401413	35962609	768	81222	370	2									
PKHD1L1	93035	broad.mit.edu	37	chr8	110401418	110401418	+	Intron	SNP	A	C	C													tttcttcataatgctcacagAtgccttattctatttccctg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110401418	C	C	110401418	1	2	74	0	1	0	0	0	0	0	0	0	12067	348	12	5		5	PKHD1L1	8	110401418	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5	110401418	35962604	769	81223	370	2									
PKHD1L1	93035	broad.mit.edu	37	chr8	110452896	110452896	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagtttagcaagataaatCagtaggaagctcattgaaaa	9	4	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110452896	T	T	110452896	1	4	74	0	1	0	0	0	0	0	0	0	12067	841	29	4		4	PKHD1L1	8	110452896	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	51478	110452896	35911126	770	81224											
PKHD1L1	93035	broad.mit.edu	37	chr8	110466953	110466953	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgacatcttttgcagaTtggaacagagacatccccat	8	9	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110466953	A	A	110466953	3	1	74	1	0	0	0	0	1	0	0	0	12067	1507	52	5	6924	5	PKHD1L1	8	110466953	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	14057	110466953	35897069	771	81225											
PKHD1L1	93035	broad.mit.edu	37	chr8	110535121	110535121	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcaacagattctgacgTaagtcataactcaaaatttt	6	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110535121	A	A	110535121	5	1	74	1	0	0	0	0	0	0	1	0	12067	1652	57	5	12630	5	PKHD1L1	8	110535121	Splice_Site	SNP	T	TCGA-17-Z045-01A-01W-0746-08	68168	110535121	35828901	772	81226											
CSMD3	114788	broad.mit.edu	37	chr8	113241081	113241081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactactatttgtaccatgaGgttgatttgaagaatttgaa	8	4	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113241081	T	T	113241081	3	4	74	1	0	0	0	0	1	0	0	0	3980	1000	35	2	263	2	CSMD3	8	113241081	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2705960	113241081	33122941	773	81227											
CSMD3	114788	broad.mit.edu	37	chr8	113277578	113277578	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtatactttaaatttgtatAtaaaaataagaaaatatgta	4	1	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113277578	T	T	113277578	1	4	74	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113277578	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	36497	113277578	33086444	774	81228											
CSMD3	114788	broad.mit.edu	37	chr8	114110953	114110953	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtttgcttcaacaacatCaatgcaaggttaatagaagc	7	7	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114110953	A	A	114110953	1	1	74	0	1	0	0	0	0	0	0	0	3980	841	29	3		3	CSMD3	8	114110953	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	833375	114110953	32253069	775	81229											
ENPP2	5168	broad.mit.edu	37	chr8	120569976	120569976	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaatcagaattttccagagGagtttctccaaatggtcagt	9	7	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120569976	T	T	120569976	1	4	74	0	1	0	0	0	0	0	0	0	5172	1189	41	3		3	ENPP2	8	120569976	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6459023	120569976	25794046	776	81230											
COL14A1	7373	broad.mit.edu	37	chr8	121238815	121238815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagatacttgggttttgGctttcttgccttctcatttc	10	8	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121238815	T	T	121238815	1	4	74	0	1	0	0	0	0	0	0	0	3703	1218	42	3		3	COL14A1	8	121238815	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	668839	121238815	25125207	777	81231											
COL14A1	7373	broad.mit.edu	37	chr8	121241027	121241027	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtaaggtcaaatagtagcCtgcttaaccactttaaaaat	7	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121241027	T	T	121241027	1	4	74	0	1	0	0	0	0	0	0	0	3703	696	24	4		4	COL14A1	8	121241027	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2212	121241027	25122995	778	81232											
SNTB1	6641	broad.mit.edu	37	chr8	121662115	121662115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatataatctcgtggtgtgcCattttttaagcccctcggaa	9	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121662115	A	A	121662115	1	1	74	0	1	0	0	0	0	0	0	0	14986	609	21	2		2	SNTB1	8	121662115	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	421088	121662115	24701907	779	81233											
ATAD2	29028	broad.mit.edu	37	chr8	124384054	124384054	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctagccctcaatgacCgagtaactggaatcactttg	8	10	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124384054	G	G	124384054	3	3	74	1	0	0	0	0	1	0	0	0	1075	652	23	4	3880	4	ATAD2	8	124384054	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2721939	124384054	21979968	780	81234											
MTSS1	9788	broad.mit.edu	37	chr8	125565848	125565848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggactggctgatgtcgctGtttcttggaatggtggagga	16	5	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125565848	T	T	125565848	3	4	74	1	0	0	0	0	1	0	0	0	10056	1368	48	3	618	3	MTSS1	8	125565848	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1181794	125565848	20798174	781	81235											
ZNF572	137209	broad.mit.edu	37	chr8	125989914	125989914	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacataggggaaaaaccttaCaaatgtaccagctgtgagaa	9	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125989914	A	A	125989914	4	1	74	1	0	0	0	0	0	1	0	0	18131	489	17	3	1410	3	ZNF572	8	125989914	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	424066	125989914	20374108	782	81236											
ADCY8	114	broad.mit.edu	37	chr8	131796004	131796004	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctttctgtcagggcgagTgagaagtcagccagagcaca	13	9	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131796004	A	A	131796004	2	1	74	1	0	0	0	0	0	0	0	1	300	1683	59	5		5	ADCY8	8	131796004	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	5806090	131796004	14568018	783	81237											
ADCY8	114	broad.mit.edu	37	chr8	131848681	131848681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccatggccaacaccccCgtgaagacaaagtactggaa	9	13	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131848681	A	A	131848681	2	1	74	1	0	0	0	0	0	0	0	1	300	639	23	1		1	ADCY8	8	131848681	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	52677	131848681	14515341	784	81238											
KCNQ3	3786	broad.mit.edu	37	chr8	133488491	133488491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacctctgtgagggcagtgCaagaggaaatgtgaggttgg	17	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133488491	A	A	133488491	1	1	74	0	1	0	0	0	0	0	0	0	8154	725	25	3		3	KCNQ3	8	133488491	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1639810	133488491	12875531	785	81239											
TG	7038	broad.mit.edu	37	chr8	134145918	134145918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaggtagcaaagccctGggacaagtggagggagctgg	17	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134145918	T	T	134145918	1	4	74	0	1	0	0	0	0	0	0	0	15936	1363	47	2		2	TG	8	134145918	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	657427	134145918	12218104	786	81240											
KHDRBS3	10656	broad.mit.edu	37	chr8	136595368	136595368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagggaaatttagaggtgGtaatagctaacctgttgagc	13	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136595368	T	T	136595368	1	4	74	0	1	0	0	0	0	0	0	0	8218	1276	44	3		3	KHDRBS3	8	136595368	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2449450	136595368	9768654	787	81241											
FAM135B	51059	broad.mit.edu	37	chr8	139153536	139153537	+	Frame_Shift_Ins	INS	-	G	G													gttgaggtaataccggaaccINSggggccgtgtgaggaccgat							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139153537	G	G	139153536	7	5	74	1	0	1	1	0	0	0	0	0	5495	652	23	0	541	0	FAM135B	8	139153536	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	2558168	139153536	7210486	788	81242											
FAM135B	51059	broad.mit.edu	37	chr8	139158018	139158018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgttctcatttcttacCgtttcctctccctcccgaaa	3	16	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139158018	A	A	139158018	1	1	74	0	1	0	0	0	0	0	0	0	5495	667	23	1		1	FAM135B	8	139158018	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4482	139158018	7206004	789	81243											
FAM135B	51059	broad.mit.edu	37	chr8	139255343	139255343	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataattgaaagggtgaaaaaGgaggtaaagaaagtgatggt	14	0	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139255343	A	A	139255343	1	1	74	0	1	0	0	0	0	0	0	0	5495	1015	35	4		4	FAM135B	8	139255343	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	97325	139255343	7108679	790	81244											
COL22A1	169044	broad.mit.edu	37	chr8	139606410	139606410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgacttcatgtacgccgGgggcatctgggccaggaggt	16	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139606410	T	T	139606410	3	4	74	1	0	0	0	0	1	0	0	0	3713	1232	43	2	427	2	COL22A1	8	139606410	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	351067	139606410	6757612	791	81245											
PTPRD	5789	broad.mit.edu	37	chr9	8340469	8340469	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgatgtaggctttctgttgTctgaattacagagaatgaaa	11	5	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8340469	C	C	8340469	2	2	74	1	0	0	0	0	0	0	0	1	12907	1681	58	5		5	PTPRD	9	8340469	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08		8340469	132872962	792	81246											
FREM1	158326	broad.mit.edu	37	chr9	14769798	14769798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttacttccaaagatgGgtttatgatgtaaagaatag	9	3	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14769798	T	T	14769798	3	4	74	1	0	0	0	0	1	0	0	0	6104	1232	43	2	1455	2	FREM1	9	14769798	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6429329	14769798	126443633	793	81247											
TTC39B	158219	broad.mit.edu	37	chr9	15186804	15186804	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcttaagcaatcctcCcacctaagcttcccaagtag	6	16	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15186804	T	T	15186804	1	4	74	0	1	0	0	0	0	0	0	0	16834	638	22	4		4	TTC39B	9	15186804	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	417006	15186804	126026627	794	81248											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18905638	18905638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgagtgtcttttagttaGcccaaagaggggaaagatga	13	5	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18905638	T	T	18905638	1	4	74	0	1	0	0	0	0	0	0	0	274	986	34	3		3	ADAMTSL1	9	18905638	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3718834	18905638	122307793	795	81249											
KIAA1797	54914	broad.mit.edu	37	chr9	20949719	20949719	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggaaaacatatccccCtttgttgtctttttttctat	7	8	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20949719	G	G	20949719	1	3	74	0	1	0	0	0	0	0	0	0	8328	696	24	4		4	KIAA1797	9	20949719	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2044081	20949719	120263712	796	81250											
TOPORS	10210	broad.mit.edu	37	chr9	32542380	32542380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtaagatgattcgtaccCatccctgtccttgtttctac	6	13	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32542380	A	A	32542380	3	1	74	1	0	0	0	0	1	0	0	0	16494	594	21	2	998	2	TOPORS	9	32542380	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	11592661	32542380	108671051	797	81251											
AQP3	360	broad.mit.edu	37	chr9	33442825	33442825	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcggtcccctccctgcgttCccctcacacgtccccagccc	6	24	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33442825	A	A	33442825	1	1	74	0	1	0	0	0	0	0	0	0	829	870	30	3		3	AQP3	9	33442825	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	900445	33442825	107770606	798	81252											
VCP	7415	broad.mit.edu	37	chr9	35057457	35057457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtcactgacagaacggCgcgcaaagcgcatggcttct	11	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35057457	A	A	35057457	3	1	74	1	0	0	0	0	1	0	0	0	17267	768	27	3	197	3	VCP	9	35057457	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1614632	35057457	106155974	799	81253											
C9orf71	169693	broad.mit.edu	37	chr9	71152258	71152258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactctctataagatggtgGggcctctgggtgggagtcat	16	7	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71152258	T	T	71152258	3	4	74	1	0	0	0	0	1	0	0	0	2520	1232	43	2	86	2	C9orf71	9	71152258	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	36094801	71152258	70061173	800	81254											
PIP5K1B	8395	broad.mit.edu	37	chr9	71404540	71404540	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacttctccagtgtttctccAggaaaatatctccagaggag	8	11	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71404540	T	T	71404540	1	4	74	0	1	0	0	0	0	0	0	0	12035	203	7	5		5	PIP5K1B	9	71404540	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	252282	71404540	69808891	801	81255											
ALDH1A1	216	broad.mit.edu	37	chr9	75520889	75520889	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttacagttctcttccatttCcagacatcttgaatccacca	3	14	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75520889	G	G	75520889	3	3	74	1	0	0	0	0	1	0	0	0	490	855	30	4	95	4	ALDH1A1	9	75520889	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4116349	75520889	65692542	802	81256											
TLE1	7088	broad.mit.edu	37	chr9	84207865	84207865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcataatgggaataaaaccCaggcccacacagctatttcc	6	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84207865	A	A	84207865	1	1	74	0	1	0	0	0	0	0	0	0	16061	609	21	2		2	TLE1	9	84207865	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8686976	84207865	57005566	803	81257											
FRMD3	257019	broad.mit.edu	37	chr9	85912602	85912602	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaacatgcctggagccaaGattctccagcttctctcatc	6	15	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85912602	A	A	85912602	1	1	74	0	1	0	0	0	0	0	0	0	6110	957	33	4		4	FRMD3	9	85912602	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1704737	85912602	55300829	804	81258											
UBQLN1	29979	broad.mit.edu	37	chr9	86298077	86298077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctcacgcctgtaatccCagcactttgggaggccgaag	13	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86298077	A	A	86298077	1	1	74	0	1	0	0	0	0	0	0	0	17022	609	21	2		2	UBQLN1	9	86298077	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	385475	86298077	54915354	805	81259											
PTCH1	5727	broad.mit.edu	37	chr9	98242852	98242852	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtcgaagtttgtccaCcgcaaaggaggtttacctct	11	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98242852	A	A	98242852	2	1	74	1	0	0	0	0	0	0	0	1	12836	494	18	3		3	PTCH1	9	98242852	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	11944775	98242852	42970579	806	81260											
NANS	54187	broad.mit.edu	37	chr9	100823378	100823378	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccacctccagcccttgctCatcctttctgttcccagcta	6	18	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100823378	G	G	100823378	1	3	74	0	1	0	0	0	0	0	0	0	10249	841	29	4		4	NANS	9	100823378	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2580526	100823378	40390053	807	81261											
GABBR2	9568	broad.mit.edu	37	chr9	101084360	101084360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgaattgctcccccatcAtttccagggaactcttggtg	9	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101084360	G	G	101084360	1	3	74	0	1	0	0	0	0	0	0	0	6216	232	8	5		5	GABBR2	9	101084360	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	260982	101084360	40129071	808	81262											
COL15A1	1306	broad.mit.edu	37	chr9	101706290	101706290	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttcgtcctccgctaagctCcaacgctctgctcgactagc	7	18	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101706290	T	T	101706290	1	4	74	0	1	0	0	0	0	0	0	0	3704	870	30	4		4	COL15A1	9	101706290	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	621930	101706290	39507141	809	81263											
COL15A1	1306	broad.mit.edu	37	chr9	101818567	101818567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggggagacagtcgttgGgccccaaggacccccaggtg	15	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101818567	T	T	101818567	3	4	74	1	0	0	0	0	1	0	0	0	3704	1232	43	2	3356	2	COL15A1	9	101818567	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	112277	101818567	39394864	810	81264											
ERP44	23071	broad.mit.edu	37	chr9	102783022	102783022	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgctgcgctgtaaaaTaaagtatgcaattattttgc	7	6	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102783022	C	C	102783022	1	2	74	0	1	0	0	0	0	0	0	0	5285	1421	49	5		5	ERP44	9	102783022	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	964455	102783022	38430409	811	81265											
TEX10	54881	broad.mit.edu	37	chr9	103084052	103084052	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccacccagaaaatgatgAtctataaaaaacaaagggag	7	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103084052	C	C	103084052	3	2	74	1	0	0	0	0	1	0	0	0	15894	347	12	5	832	5	TEX10	9	103084052	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	301030	103084052	38129379	812	81266											
LPPR1	54886	broad.mit.edu	37	chr9	104086288	104086288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctatctcagattttatctGcttgtgtttgctccacagaa	6	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104086288	T	T	104086288	1	4	74	0	1	0	0	0	0	0	0	0	9011	1334	46	3		3	LPPR1	9	104086288	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1002236	104086288	37127143	813	81267											
ABCA1	19	broad.mit.edu	37	chr9	107602736	107602736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgggtggaggagctggagCtgttcacattggtcagaaac	15	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107602736	A	A	107602736	3	1	74	1	0	0	0	0	1	0	0	0	28	797	28	3	6075	3	ABCA1	9	107602736	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3516448	107602736	33610695	814	81268											
RAD23B	5887	broad.mit.edu	37	chr9	110087285	110087285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaagaagctatagaaagGgtgagtttaagtaaaacttt	10	2	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110087285	T	T	110087285	3	4	74	1	0	0	0	0	1	0	0	0	13091	1246	43	2	1150	2	RAD23B	9	110087285	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2484549	110087285	31126146	815	81269											
PTPN3	5774	broad.mit.edu	37	chr9	112172594	112172594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagagctgctgatcaacgCcgtcaggtgagcaggagcct	13	11	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112172594	A	A	112172594	3	1	74	1	0	0	0	0	1	0	0	0	12897	739	26	3	1374	3	PTPN3	9	112172594	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2085309	112172594	29040837	816	81270											
RGS3	5998	broad.mit.edu	37	chr9	116276566	116276566	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagggaattccttgaagcccGagcccatgtgaagcctccct	11	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116276566	T	T	116276566	1	4	74	0	1	0	0	0	0	0	0	0	13415	1073	37	3		3	RGS3	9	116276566	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4103972	116276566	24936865	817	81271											
PAPPA	5069	broad.mit.edu	37	chr9	118974078	118974078	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagacagagccctccttcgaGactggagacctctgcaatga	11	12	1	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118974078	A	A	118974078	2	1	74	1	0	0	0	0	0	0	0	1	11526	933	33	4		4	PAPPA	9	118974078	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2697512	118974078	22239353	818	81272											
ASTN2	23245	broad.mit.edu	37	chr9	119770559	119770559	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatgggtgaacggagagacAgatactttcttactgatttt	10	6	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119770559	T	T	119770559	1	4	74	0	1	0	0	0	0	0	0	0	1069	203	7	5		5	ASTN2	9	119770559	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	796481	119770559	21442872	819	81273											
ASTN2	23245	broad.mit.edu	37	chr9	119903902	119903902	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccttgaaactccctccctGacccattgaagatatagaat	5	12	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119903902	A	A	119903902	1	1	74	0	1	0	0	0	0	0	0	0	1069	1305	45	4		4	ASTN2	9	119903902	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	133343	119903902	21309529	820	81274											
ASTN2	23245	broad.mit.edu	37	chr9	119976885	119976886	+	Missense_Mutation	DNP	GG	TT	TT													ggggacccagcagcacagatGggatgtagtggatctcatga							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	119976886	TT	TT	119976885	3	4	74	1	0	0	0	0	1	0	0	0	1069	1348	47	2	3411	2	ASTN2	9	119976885	Missense_Mutation	DNP	GG	TCGA-17-Z045-01A-01W-0746-08	72983	119976885	21236546	821	81275											
ASTN2	23245	broad.mit.edu	37	chr9	120166157	120166157	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagctccaagagaatgagcaGacatcaatggtcaatttcat	8	9	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120166157	A	A	120166157	1	1	74	0	1	0	0	0	0	0	0	0	1069	957	33	4		4	ASTN2	9	120166157	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	189272	120166157	21047274	822	81276											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123165070	123165070	+	Intron	SNP	T	A	A													cagcttgtgccccccagctcTgtggtcaggttacctttgtt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123165070	A	A	123165070	1	1	74	0	1	0	0	0	0	0	0	0	3176	1595	55	5		5	CDK5RAP2	9	123165070	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2998913	123165070	18048361	823	81277	371	2									
CDK5RAP2	55755	broad.mit.edu	37	chr9	123165072	123165072	+	Intron	SNP	T	G	G													gcttgtgccccccagctctgTggtcaggttacctttgttcc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123165072	G	G	123165072	1	3	74	0	1	0	0	0	0	0	0	0	3176	1711	59	5		5	CDK5RAP2	9	123165072	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2	123165072	18048359	824	81278	371	2									
CDK5RAP2	55755	broad.mit.edu	37	chr9	123216048	123216048	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttcacctttttgcttagGtgtcttctcagttttaccat	6	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123216048	A	A	123216048	3	1	74	1	0	0	0	0	1	0	0	0	3176	1261	44	4	3274	4	CDK5RAP2	9	123216048	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	50976	123216048	17997383	825	81279											
OR1L6	392390	broad.mit.edu	37	chr9	125512435	125512435	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcctggcccagatgtaCttctttatggcatttgggaa	12	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125512435	A	A	125512435	4	1	74	1	0	0	0	0	0	1	0	0	11060	576	20	3	311	3	OR1L6	9	125512435	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2296387	125512435	15700996	826	81280											
OR1K1	392392	broad.mit.edu	37	chr9	125563218	125563218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgcgaggcagagtggggcCgtgtggccactgtcatgtac	17	10	1	1	rs150392492		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125563218	A	A	125563218	3	1	74	1	0	0	0	0	1	0	0	0	11056	652	23	1	819	1	OR1K1	9	125563218	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	50783	125563218	15650213	827	81281											
GAPVD1	26130	broad.mit.edu	37	chr9	128122825	128122825	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtttatcttcgagaagcaCcatggccatctgcacaatca	8	11	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128122825	T	T	128122825	3	4	74	1	0	0	0	0	1	0	0	0	6301	507	18	4	4242	4	GAPVD1	9	128122825	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2559607	128122825	13090606	828	81282											
RALGPS1	9649	broad.mit.edu	37	chr9	129812360	129812360	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgagaaattctaacagcacaGactttaaaaataagggcaga	8	7	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129812360	T	T	129812360	3	4	74	1	0	0	0	0	1	0	0	0	13125	933	33	3	357	3	RALGPS1	9	129812360	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1689535	129812360	11401071	829	81283											
AK1	203	broad.mit.edu	37	chr9	130630759	130630759	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatggtctcagggcctgcGtccacatacagcagcagtgt	12	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130630759	A	A	130630759	2	1	74	1	0	0	0	0	0	0	0	1	439	1136	40	4		4	AK1	9	130630759	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	818399	130630759	10582672	830	81284											
DNM1	1759	broad.mit.edu	37	chr9	130984572	130984572	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaggtggaggaatacaagAacttccgccctgatgaccca	12	10	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130984572	T	T	130984572	3	4	74	1	0	0	0	0	1	0	0	0	4710	246	9	5	972	5	DNM1	9	130984572	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	353813	130984572	10228859	831	81285											
DNM1	1759	broad.mit.edu	37	chr9	130988183	130988183	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctttatctgtgtcgatgtCtctctctcttcccccgtgcc	6	16	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130988183	T	T	130988183	1	4	74	0	1	0	0	0	0	0	0	0	4710	928	32	4		4	DNM1	9	130988183	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3611	130988183	10225248	832	81286											
SPTAN1	6709	broad.mit.edu	37	chr9	131370563	131370563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaacgtccaggtgaggcCtctggaccatggagttggag	15	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131370563	A	A	131370563	1	1	74	0	1	0	0	0	0	0	0	0	15235	696	24	2		2	SPTAN1	9	131370563	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	382380	131370563	9842868	833	81287											
SETX	23064	broad.mit.edu	37	chr9	135144819	135144819	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagtgtagatacttgggttCtgggctgaaaaaaggcgaat	13	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135144819	A	A	135144819	1	1	74	0	1	0	0	0	0	0	0	0	14254	928	32	3		3	SETX	9	135144819	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3774256	135144819	6068612	834	81288											
GTF3C4	9329	broad.mit.edu	37	chr9	135562528	135562528	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcatttggttaatgtGtggttttatgataactctct	8	5	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135562528	A	A	135562528	1	1	74	0	1	0	0	0	0	0	0	0	6940	1392	48	4		4	GTF3C4	9	135562528	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	417709	135562528	5650903	835	81289											
LCN8	138307	broad.mit.edu	37	chr9	139649685	139649685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcctccaccccaaggccCctgggctcaccaggccgggc	11	21	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139649685	T	T	139649685	1	4	74	0	1	0	0	0	0	0	0	0	8758	638	22	4		4	LCN8	9	139649685	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4087157	139649685	1563746	836	81290											
CACNA1B	774	broad.mit.edu	37	chr9	140904434	140904434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggccatgtggggcagagGttcccttcctcagctggacc	15	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140904434	T	T	140904434	1	4	74	0	1	0	0	0	0	0	0	0	2565	1276	44	3		3	CACNA1B	9	140904434	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1254749	140904434	308997	837	81291											
DIP2C	22982	broad.mit.edu	37	chr10	436004	436004	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcgtcaccgtcacaccCagcacactgccatccttaca	5	19	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	436004	A	A	436004	2	1	74	1	0	0	0	0	0	0	0	1	4569	581	21	2		2	DIP2C	10	436004	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08		436004	135098743	838	81292											
ADARB2	105	broad.mit.edu	37	chr10	1569042	1569042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtggaggggtcgtgagcgGgcacaggcagccacttcgct	18	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1569042	T	T	1569042	1	4	74	0	1	0	0	0	0	0	0	0	283	1247	43	2		2	ADARB2	10	1569042	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1133038	1569042	133965705	839	81293											
AKR1E2	83592	broad.mit.edu	37	chr10	4920329	4920329	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgcaaacgatgcattaaAcatgcccatcacctccaaac	4	15	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4920329	G	G	4920329	1	3	74	0	1	0	0	0	0	0	0	0	474	58	2	5		5	AKR1E2	10	4920329	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3351287	4920329	130614418	840	81294											
IL2RA	3559	broad.mit.edu	37	chr10	6068009	6068009	+	Intron	DEL	A	-	-													ctgcaaagcaaaagaagcctAttaggaactcaagaggcccc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6068009	-	-	6068009	6	5	74	0	1	1	0	1	0	0	0	0	7756	464	16	0		0	IL2RA	10	6068009	Intron	DEL	A	TCGA-17-Z045-01A-01W-0746-08	1147680	6068009	129466738	841	81295											
KIN	22944	broad.mit.edu	37	chr10	7829911	7829911	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatggcgaccacggcagCgatcactttctggaccccag	10	17	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7829911	A	A	7829911	1	1	74	0	1	0	0	0	0	0	0	0	8386	783	27	3		3	KIN	10	7829911	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1761902	7829911	127704836	842	81296											
VIM	7431	broad.mit.edu	37	chr10	17272616	17272616	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccgcccctggcggtttcctCgttcccctttggttaatgcg	10	16	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17272616	A	A	17272616	1	1	74	0	1	0	0	0	0	0	0	0	17293	899	31	3		3	VIM	10	17272616	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9442705	17272616	118262131	843	81297											
PLXDC2	84898	broad.mit.edu	37	chr10	20125131	20125131	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaaaaaagagtatgGttgggaagtaaatgacagag	11	2	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20125131	T	T	20125131	1	4	74	0	1	0	0	0	0	0	0	0	12213	1276	44	3		3	PLXDC2	10	20125131	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2852515	20125131	115409616	844	81298											
NEBL	10529	broad.mit.edu	37	chr10	21384783	21384783	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagtcctcttagtactgttCaaaagatgacggaactagaa	9	7	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21384783	A	A	21384783	1	1	74	0	1	0	0	0	0	0	0	0	10398	841	29	3		3	NEBL	10	21384783	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1259652	21384783	114149964	845	81299											
ARMC3	219681	broad.mit.edu	37	chr10	23321835	23321835	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagattccaaaagagaaactAcctgatttcagctgggaact	8	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23321835	T	T	23321835	2	4	74	1	0	0	0	0	0	0	0	1	956	378	14	5		5	ARMC3	10	23321835	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1937052	23321835	112212912	846	81300											
KIAA1217	56243	broad.mit.edu	37	chr10	24447405	24447405	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtatattcattatcagTctaaactgcaggctcggaaa	8	7	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24447405	A	A	24447405	1	1	74	0	1	0	0	0	0	0	0	0	8286	1682	58	5		5	KIAA1217	10	24447405	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1125570	24447405	111087342	847	81301											
ZEB1	6935	broad.mit.edu	37	chr10	31816100	31816100	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaactgaaggtctgatgaagGatgacagggctgaaagtcaa	13	5	2	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31816100	C	C	31816100	3	2	74	1	0	0	0	0	1	0	0	0	17749	1174	41	4	3331	4	ZEB1	10	31816100	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	7368695	31816100	103718647	848	81302											
NRP1	8829	broad.mit.edu	37	chr10	33514998	33514998	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagaaagctaccaaacaaaCaagtaaaaattgatcatcca	4	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33514998	G	G	33514998	1	3	74	0	1	0	0	0	0	0	0	0	10755	493	17	4		4	NRP1	10	33514998	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1698898	33514998	102019749	849	81303											
ANXA8	653145	broad.mit.edu	37	chr10	47133427	47133427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtataggcctccattgcCacaggggccagagcttctgc	11	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47133427	A	A	47133427	1	1	74	0	1	0	0	0	0	0	0	0	724	609	21	2		2	ANXA8	10	47133427	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	13618429	47133427	88401320	850	81304											
PCDH15	65217	broad.mit.edu	37	chr10	55782595	55782595	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctaattttggcacacaaacCctaatagcaaatctcctaat	4	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55782595	T	T	55782595	1	4	74	0	1	0	0	0	0	0	0	0	11605	638	22	4		4	PCDH15	10	55782595	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8649168	55782595	79752152	851	81305											
CCDC6	8030	broad.mit.edu	37	chr10	61665930	61665930	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctcctcctgcagtgcctTgcacttcagtttgtaggtct	9	12	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61665930	C	C	61665930	3	2	74	1	0	0	0	0	1	0	0	0	2858	1821	63	5	1207	5	CCDC6	10	61665930	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	5883335	61665930	73868817	852	81306											
KIAA1279	26128	broad.mit.edu	37	chr10	70768559	70768559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttgcaaataaagctgtGtgatagttgcattcactgtt	9	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70768559	T	T	70768559	1	4	74	0	1	0	0	0	0	0	0	0	8291	1392	48	3		3	KIAA1279	10	70768559	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	9102629	70768559	64766188	853	81307											
P4HA1	5033	broad.mit.edu	37	chr10	74828489	74828489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttcgaaggctatgaaaCaaactacaatttaaaatctt	5	7	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74828489	A	A	74828489	1	1	74	0	1	0	0	0	0	0	0	0	11450	493	17	3		3	P4HA1	10	74828489	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4059930	74828489	60706258	854	81308											
ADK	132	broad.mit.edu	37	chr10	76415753	76415753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacgtgaccatgggaaccGcctgctctttcctgcaggag	13	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76415753	T	T	76415753	1	4	74	0	1	0	0	0	0	0	0	0	320	1102	38	3		3	ADK	10	76415753	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1587264	76415753	59118994	855	81309											
GRID1	2894	broad.mit.edu	37	chr10	88042846	88042846	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accctaggcacctatctgccTgtccatgtgccctcatggcc	8	17	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88042846	A	A	88042846	1	1	74	0	1	0	0	0	0	0	0	0	6837	1595	55	5		5	GRID1	10	88042846	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	11627093	88042846	47491901	856	81310											
STAMBPL1	57559	broad.mit.edu	37	chr10	90733067	90733067	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatcaccatctgaacagctCtgagagagacaagaagtgga	10	9	4	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90733067	A	A	90733067	2	1	74	1	0	0	0	0	0	0	0	1	15369	928	32	3		3	STAMBPL1	10	90733067	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2690221	90733067	44801680	857	81311											
HTR7	3363	broad.mit.edu	37	chr10	92509079	92509079	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccaggaaacttgtgtttgGcagcactcttcctggcagcc	11	12	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92509079	A	A	92509079	3	1	74	1	0	0	0	0	1	0	0	0	7522	1203	42	4	643	4	HTR7	10	92509079	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1776012	92509079	43025668	858	81312											
TLL2	7093	broad.mit.edu	37	chr10	98240077	98240077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctcatccctcccatctgGgcaggagaagggaggaagca	12	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98240077	T	T	98240077	1	4	74	0	1	0	0	0	0	0	0	0	16069	1247	43	2		2	TLL2	10	98240077	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5730998	98240077	37294670	859	81313											
DNMBP	23268	broad.mit.edu	37	chr10	101648710	101648710	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactttcacacatgcggactCctggagccagttaggacaga	10	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101648710	A	A	101648710	4	1	74	1	0	0	0	0	0	1	0	0	4714	869	30	3	1600	3	DNMBP	10	101648710	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3408633	101648710	33886037	860	81314											
CHUK	1147	broad.mit.edu	37	chr10	101959779	101959779	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaatggcacgctgttcccTataaaagagaaaacacgctc	7	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101959779	C	C	101959779	5	2	74	1	0	0	0	0	0	0	1	0	3447	1536	53	5	583	5	CHUK	10	101959779	Splice_Site	SNP	T	TCGA-17-Z045-01A-01W-0746-08	311069	101959779	33574968	861	81315											
CCDC147	159686	broad.mit.edu	37	chr10	106130858	106130858	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttagaaacattttattggtGactgatgttatcttgtaacc	7	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106130858	T	T	106130858	1	4	74	0	1	0	0	0	0	0	0	0	2807	1305	45	3		3	CCDC147	10	106130858	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4171079	106130858	29403889	862	81316											
SORCS1	114815	broad.mit.edu	37	chr10	108380164	108380164	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgagcttctgtccctagatCgcatgtggaaggtgaaccca	11	10	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108380164	A	A	108380164	1	1	74	0	1	0	0	0	0	0	0	0	15044	899	31	3		3	SORCS1	10	108380164	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2249306	108380164	27154583	863	81317											
DCLRE1A	9937	broad.mit.edu	37	chr10	115612691	115612691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctgaataccatctccaCaacttgaattctgactagaa	5	11	3	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115612691	A	A	115612691	3	1	74	1	0	0	0	0	1	0	0	0	4327	478	17	3	2907	3	DCLRE1A	10	115612691	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	7232527	115612691	19922056	864	81318											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118354340	118354340	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaacaacgtgcgagtggtGggcgcccaggtggcccagat	16	12	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118354340	T	T	118354340	2	4	74	1	0	0	0	0	0	0	0	1	12245	1335	47	2		2	PNLIPRP1	10	118354340	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2741649	118354340	17180407	865	81319											
C10orf82	143379	broad.mit.edu	37	chr10	118424525	118424525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactgacccagaagctgaGgcctgaaaacttgtgacttg	10	11	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118424525	T	T	118424525	1	4	74	0	1	0	0	0	0	0	0	0	1631	1015	35	2		2	C10orf82	10	118424525	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	70185	118424525	17110222	866	81320											
SEC23IP	11196	broad.mit.edu	37	chr10	121689157	121689157	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattagattttgaaccagaGatattctttgccttggggtc	9	7	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121689157	C	C	121689157	3	2	74	1	0	0	0	0	1	0	0	0	14106	933	33	4	2406	4	SEC23IP	10	121689157	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3264632	121689157	13845590	867	81321											
ZRANB1	54764	broad.mit.edu	37	chr10	126631393	126631393	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacccagtgcttatcccaaCgtaggaccaggagtcctaca	9	13	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126631393	T	T	126631393	3	4	74	1	0	0	0	0	1	0	0	0	18351	536	19	4	333	4	ZRANB1	10	126631393	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4942236	126631393	8903354	868	81322											
TCERG1L	256536	broad.mit.edu	37	chr10	133046467	133046467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacaaacacacactactcaCacacaactctctcacacaca	0	18	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133046467	T	T	133046467	1	4	74	0	1	0	0	0	0	0	0	0	15808	493	17	4		4	TCERG1L	10	133046467	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6415074	133046467	2488280	869	81323											
ART1	417	broad.mit.edu	37	chr11	3680800	3680800	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctctcagtccctgctactCctgtcccctcaggcccagag	7	19	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3680800	A	A	3680800	1	1	74	0	1	0	0	0	0	0	0	0	1001	870	30	3		3	ART1	11	3680800	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08		3680800	131325716	870	81324											
OR51G2	81282	broad.mit.edu	37	chr11	4936211	4936211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgatggacagcacggtgCgcaggatcagagcataagag	16	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4936211	A	A	4936211	3	1	74	1	0	0	0	0	1	0	0	0	11193	768	27	3	265	3	OR51G2	11	4936211	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1255411	4936211	130070305	871	81325											
OR52A4	390053	broad.mit.edu	37	chr11	5142800	5142800	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaccatttgtaataggCagggccattcaggggtcttc	12	8	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5142800	A	A	5142800	2	1	74	1	0	0	0	0	0	0	0	1	11203	697	25	3		3	OR52A4	11	5142800	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	206589	5142800	129863716	872	81326											
OR51V1	283111	broad.mit.edu	37	chr11	5221887	5221887	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggaagaattcgtgctgGtgctagggcttactgaagta	14	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5221887	A	A	5221887	3	1	74	1	0	0	0	0	1	0	0	0	11201	1261	44	4	924	4	OR51V1	11	5221887	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	79087	5221887	129784629	873	81327											
OR51I1	390063	broad.mit.edu	37	chr11	5462058	5462058	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgctgttcctgggatatgatGaccagcatggctctcaggat	12	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5462058	T	T	5462058	2	4	74	1	0	0	0	0	0	0	0	1	11194	1277	45	3		3	OR51I1	11	5462058	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	240171	5462058	129544458	874	81328											
TRIM6-TRIM34	445372	broad.mit.edu	37	chr11	5655032	5655032	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtgtgattcccttctcatAggagaaactccaggcagtcc	9	11	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5655032	T	T	5655032	5	4	74	1	0	0	0	0	0	0	1	0	16659	434	15	5	1518	5	TRIM6-TRIM34	11	5655032	Splice_Site	SNP	A	TCGA-17-Z045-01A-01W-0746-08	192974	5655032	129351484	875	81329											
OR52L1	338751	broad.mit.edu	37	chr11	6007733	6007733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaaggggtgacaaatgGctacatagcaatccagagcc	13	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6007733	T	T	6007733	3	4	74	1	0	0	0	0	1	0	0	0	11219	1203	42	3	565	3	OR52L1	11	6007733	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	352701	6007733	128998783	876	81330											
OR52B2	255725	broad.mit.edu	37	chr11	6191551	6191551	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatggtaacattggtgtgActcatgatgcactttatggt	11	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6191551	C	C	6191551	3	2	74	1	0	0	0	0	1	0	0	0	11205	272	10	5	968	5	OR52B2	11	6191551	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	183818	6191551	128814965	877	81331											
CCKBR	887	broad.mit.edu	37	chr11	6292070	6292070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcaaaatctgggcgaggCggagctttggagggcgacgg	19	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6292070	A	A	6292070	1	1	74	0	1	0	0	0	0	0	0	0	2909	783	27	3		3	CCKBR	11	6292070	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	100519	6292070	128714446	878	81332											
SMPD1	6609	broad.mit.edu	37	chr11	6412231	6412231	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgctggtgcgctgggctcAgaatgcatccctgatggaga	15	9	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6412231	T	T	6412231	1	4	74	0	1	0	0	0	0	0	0	0	14918	203	7	5		5	SMPD1	11	6412231	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	120161	6412231	128594285	879	81333											
OR10A5	144124	broad.mit.edu	37	chr11	6866923	6866923	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccatacttatggctataGgaaactggacagaaataagt	9	7	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6866923	T	T	6866923	4	4	74	1	0	0	0	0	0	1	0	0	10987	1001	35	2	12	2	OR10A5	11	6866923	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	454692	6866923	128139593	880	81334											
TMEM41B	440026	broad.mit.edu	37	chr11	9321227	9321227	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagtgacattcttgctgatCcagcttctacccaggatttt	9	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9321227	G	G	9321227	3	3	74	1	0	0	0	0	1	0	0	0	16288	855	30	4	772	4	TMEM41B	11	9321227	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2454304	9321227	125685289	881	81335											
USP47	55031	broad.mit.edu	37	chr11	11924525	11924525	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacctttcattgcaagtttGttgtcatatattttctaaca	4	7	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11924525	A	A	11924525	1	1	74	0	1	0	0	0	0	0	0	0	17205	1392	48	4		4	USP47	11	11924525	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2603298	11924525	123081991	882	81336											
PDE3B	5140	broad.mit.edu	37	chr11	14695841	14695841	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggcagcccctatcgtcttCccctctgcatactgctcctg	9	17	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14695841	A	A	14695841	1	1	74	0	1	0	0	0	0	0	0	0	11732	870	30	3		3	PDE3B	11	14695841	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2771316	14695841	120310675	883	81337											
IGSF22	283284	broad.mit.edu	37	chr11	18737215	18737215	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcatgcgcgactcctcTctttcacacgtacatttttg	7	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18737215	A	A	18737215	3	1	74	1	0	0	0	0	1	0	0	0	7670	1551	54	5	2737	5	IGSF22	11	18737215	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4041374	18737215	116269301	884	81338											
PAMR1	25891	broad.mit.edu	37	chr11	35457441	35457441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaagcccaagaatgagcCttgactcactagggatgcag	11	11	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35457441	A	A	35457441	1	1	74	0	1	0	0	0	0	0	0	0	11507	696	24	2		2	PAMR1	11	35457441	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	16720226	35457441	99549075	885	81339											
PAMR1	25891	broad.mit.edu	37	chr11	35492375	35492375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatgacaaatctgtgggtGgacagggtgacggagggaag	17	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35492375	T	T	35492375	1	4	74	0	1	0	0	0	0	0	0	0	11507	1363	47	2		2	PAMR1	11	35492375	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	34934	35492375	99514141	886	81340											
PAMR1	25891	broad.mit.edu	37	chr11	35497254	35497254	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgatccttgggccaaataCagcccactgcctccttttga	7	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35497254	G	G	35497254	1	3	74	0	1	0	0	0	0	0	0	0	11507	493	17	4		4	PAMR1	11	35497254	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4879	35497254	99509262	887	81341											
PRR5L	79899	broad.mit.edu	37	chr11	36477059	36477059	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaaagggaagaggaggaGgcagaggtggcctggagatg	21	3	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36477059	C	C	36477059	1	2	74	0	1	0	0	0	0	0	0	0	12708	1015	35	4		4	PRR5L	11	36477059	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	979805	36477059	98529457	888	81342											
ALKBH3	221120	broad.mit.edu	37	chr11	43904536	43904536	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttagtttctacatgtcatAgagatcatctccaagtgggc	9	8	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43904536	G	G	43904536	1	3	74	0	1	0	0	0	0	0	0	0	528	435	15	5		5	ALKBH3	11	43904536	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	7427477	43904536	91101980	889	81343											
KIAA0652	9776	broad.mit.edu	37	chr11	46680843	46680843	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgaactgtgtgaaaccgttCttagcacaggtcccatctct	8	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46680843	G	G	46680843	1	3	74	0	1	0	0	0	0	0	0	0	8258	928	32	4		4	KIAA0652	11	46680843	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2776307	46680843	88325673	890	81344											
LRP4	4038	broad.mit.edu	37	chr11	46921927	46921927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggggaacaggtaggtaGtactgaatcccaggaaaaga	14	5	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46921927	T	T	46921927	3	4	74	1	0	0	0	0	1	0	0	0	9046	1020	36	3	5659	3	LRP4	11	46921927	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	241084	46921927	88084589	891	81345											
OR5L2	26338	broad.mit.edu	37	chr11	55595287	55595287	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcactgtgaatgagacacTgctgttcctggtggccactt	11	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595287	A	A	55595287	3	1	74	1	0	0	0	0	1	0	0	0	11265	1580	55	5	595	5	OR5L2	11	55595287	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	8673360	55595287	79411229	892	81346											
OR5D16	390144	broad.mit.edu	37	chr11	55606547	55606547	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaattctttttcttttGcacctttgtagtgactgaat	8	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55606547	C	C	55606547	3	2	74	1	0	0	0	0	1	0	0	0	11250	1319	46	4	322	4	OR5D16	11	55606547	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	11260	55606547	79399969	893	81347											
OR8J3	81168	broad.mit.edu	37	chr11	55905149	55905149	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctggacagctagagacacCtgtgagaataaactcagtga	10	9	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55905149	G	G	55905149	3	3	74	1	0	0	0	0	1	0	0	0	11336	681	24	4	903	4	OR8J3	11	55905149	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	298602	55905149	79101367	894	81348											
OR5R1	219479	broad.mit.edu	37	chr11	56185706	56185706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgatattaacttcagcCatttatcctaacaggttttg	5	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56185706	A	A	56185706	3	1	74	1	0	0	0	0	1	0	0	0	11274	594	21	2	973	2	OR5R1	11	56185706	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	280557	56185706	78820810	895	81349											
OR9Q1	219956	broad.mit.edu	37	chr11	57876667	57876667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacgtggtatgcagaatgGcccctgacaccccacagatg	11	13	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57876667	T	T	57876667	1	4	74	0	1	0	0	0	0	0	0	0	11349	1218	42	3		3	OR9Q1	11	57876667	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1690961	57876667	77129849	896	81350											
CNTF	1270	broad.mit.edu	37	chr11	58392013	58392013	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcagttagtcccttctctCttccttgctttctcttctaa	4	13	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58392013	T	T	58392013	1	4	74	0	1	0	0	0	0	0	0	0	3669	928	32	4		4	CNTF	11	58392013	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	515346	58392013	76614503	897	81351											
PLAC1L	219990	broad.mit.edu	37	chr11	59807993	59807993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccggtgctgagaacctcCatggtaaataacaagtttta	10	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59807993	A	A	59807993	3	1	74	1	0	0	0	0	1	0	0	0	12108	594	21	2	63	2	PLAC1L	11	59807993	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1415980	59807993	75198523	898	81352											
MS4A6A	64231	broad.mit.edu	37	chr11	59939471	59939471	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaatcaagagatccccaatGaacacatatcttaaatgaca	4	10	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59939471	A	A	59939471	1	1	74	0	1	0	0	0	0	0	0	0	9958	1305	45	4		4	MS4A6A	11	59939471	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	131478	59939471	75067045	899	81353											
MS4A14	84689	broad.mit.edu	37	chr11	60183516	60183516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatgacctgccccctcaaGgcatactatcccaagacaca	5	16	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60183516	T	T	60183516	3	4	74	1	0	0	0	0	1	0	0	0	9952	1000	35	2	1093	2	MS4A14	11	60183516	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	244045	60183516	74823000	900	81354											
TMEM132A	54972	broad.mit.edu	37	chr11	60695130	60695130	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtggtcccccctcgagtCactgagccccaccaacggcc	10	19	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60695130	T	T	60695130	2	4	74	1	0	0	0	0	0	0	0	1	16168	813	29	4		4	TMEM132A	11	60695130	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	511614	60695130	74311386	901	81355											
NXF1	10482	broad.mit.edu	37	chr11	62563752	62563752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catattttgttcgtatcacaCacttactagggtctttaagc	6	9	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62563752	A	A	62563752	1	1	74	0	1	0	0	0	0	0	0	0	10877	493	17	3		3	NXF1	11	62563752	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1868622	62563752	72442764	902	81356											
RPS6KB2	6199	broad.mit.edu	37	chr11	67200751	67200751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtagcccccctcctggGgcaagggcagggcctggtgg	19	12	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67200751	T	T	67200751	1	4	74	0	1	0	0	0	0	0	0	0	13768	1247	43	2		2	RPS6KB2	11	67200751	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4636999	67200751	67805765	903	81357											
LRP5	4041	broad.mit.edu	37	chr11	68154221	68154221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggagccagggccaggCcaagcacaggcgagagggag	19	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68154221	T	T	68154221	1	4	74	0	1	0	0	0	0	0	0	0	9047	754	26	4		4	LRP5	11	68154221	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	953470	68154221	66852295	904	81358											
PDE2A	5138	broad.mit.edu	37	chr11	72291909	72291909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatggagggtccccactGtgagcagggcagggtcttac	14	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72291909	T	T	72291909	1	4	74	0	1	0	0	0	0	0	0	0	11730	1392	48	3		3	PDE2A	11	72291909	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4137688	72291909	62714607	905	81359											
PRKRIR	5612	broad.mit.edu	37	chr11	76061868	76061869	+	3'UTR	DNP	CC	AG	AG													acaccttacggctttttcttCcaaatatcaaatataagaaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	76061869	AG	AG	76061868	1	1	74	0	1	0	0	0	0	0	0	0	12632	870	30	3		3	PRKRIR	11	76061868	3'UTR	DNP	CC	TCGA-17-Z045-01A-01W-0746-08	3769959	76061868	58944648	906	81360											
C11orf30	56946	broad.mit.edu	37	chr11	76256959	76256959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcctaagctgacatcacCagttacaagcatatctccca	6	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76256959	T	T	76256959	3	4	74	1	0	0	0	0	1	0	0	0	1648	594	21	4	3466	4	C11orf30	11	76256959	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	195091	76256959	58749557	907	81361											
C11orf30	56946	broad.mit.edu	37	chr11	76257297	76257297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgcgtattcagaatgtaGgccaaaagaaagctgaagag	11	6	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76257297	A	A	76257297	3	1	74	1	0	0	0	0	1	0	0	0	1648	1000	35	4	3804	4	C11orf30	11	76257297	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	338	76257297	58749219	908	81362											
DLG2	1740	broad.mit.edu	37	chr11	83525859	83525859	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatctgagtttagatcctTcagagggacaccagcaatgt	9	8	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83525859	A	A	83525859	1	1	74	0	1	0	0	0	0	0	0	0	4595	1798	62	5		5	DLG2	11	83525859	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	7268562	83525859	51480657	909	81363											
FAT3	120114	broad.mit.edu	37	chr11	92430618	92430618	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacattttctggaggtaagcGcatagagggaactgaaattc	11	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92430618	C	C	92430618	1	2	74	0	1	0	0	0	0	0	0	0	5748	1102	38	4		4	FAT3	11	92430618	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8904759	92430618	42575898	910	81364											
MRE11A	4361	broad.mit.edu	37	chr11	94189495	94189495	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtctggtttctctgaAacgacgtacctagatcataa	7	8	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94189495	C	C	94189495	3	2	74	1	0	0	0	0	1	0	0	0	9853	14	1	5	644	5	MRE11A	11	94189495	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1758877	94189495	40817021	911	81365											
SESN3	143686	broad.mit.edu	37	chr11	94917779	94917779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaacagataagataatGttgggtgctattcatactaa	9	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94917779	T	T	94917779	1	4	74	0	1	0	0	0	0	0	0	0	14239	1392	48	3		3	SESN3	11	94917779	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	728284	94917779	40088737	912	81366											
CNTN5	53942	broad.mit.edu	37	chr11	100126553	100126553	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accgaaagtacggccacactGtcctggagcccagcagctga	11	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100126553	C	C	100126553	2	2	74	1	0	0	0	0	0	0	0	1	3676	1364	48	4		4	CNTN5	11	100126553	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5208774	100126553	34879963	913	81367											
CNTN5	53942	broad.mit.edu	37	chr11	100207834	100207834	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagggatcatcagacatgcaGagaagacttcaaccaacatt	8	9	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100207834	T	T	100207834	1	4	74	0	1	0	0	0	0	0	0	0	3676	957	33	3		3	CNTN5	11	100207834	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	81281	100207834	34798682	914	81368											
MMP8	4317	broad.mit.edu	37	chr11	102585401	102585401	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatatccttgggataacctTgcagaatatcatagccactc	6	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102585401	G	G	102585401	3	3	74	1	0	0	0	0	1	0	0	0	9762	1812	63	5	339	5	MMP8	11	102585401	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2377567	102585401	32421115	915	81369											
USP28	57646	broad.mit.edu	37	chr11	113677221	113677221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagataccttaatcagcCctgcttcagacccatctcgg	7	14	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113677221	A	A	113677221	3	1	74	1	0	0	0	0	1	0	0	0	17185	623	22	2	871	2	USP28	11	113677221	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	11091820	113677221	21329295	916	81370											
AMICA1	120425	broad.mit.edu	37	chr11	118065129	118065129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagagaaggccaaactgGgtgctgtgggggaagggcag	18	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118065129	T	T	118065129	3	4	74	1	0	0	0	0	1	0	0	0	574	1232	43	2	92	2	AMICA1	11	118065129	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4387908	118065129	16941387	917	81371											
TRAPPC4	51399	broad.mit.edu	37	chr11	118889734	118889734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggagggccccagtgctGtagaagtgggctggttgtag	20	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118889734	T	T	118889734	1	4	74	0	1	0	0	0	0	0	0	0	16585	1392	48	3		3	TRAPPC4	11	118889734	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	824605	118889734	16116782	918	81372											
TECTA	7007	broad.mit.edu	37	chr11	120998996	120998996	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttggctgcggggacttcgGatcctggtggccgaccagga	17	11	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120998996	T	T	120998996	2	4	74	1	0	0	0	0	0	0	0	1	15869	1161	41	3		3	TECTA	11	120998996	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2109262	120998996	14007520	919	81373											
RPUSD4	84881	broad.mit.edu	37	chr11	126081354	126081354	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggactcaccggctccttCtttgtgtcttgttcccgttt	8	12	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126081354	A	A	126081354	3	1	74	1	0	0	0	0	1	0	0	0	13780	912	32	3	981	3	RPUSD4	11	126081354	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5082358	126081354	8925162	920	81374											
NTM	50863	broad.mit.edu	37	chr11	131682670	131682670	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaagggaggccgaagtggAgagggaagatgactgcaagg	19	5	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131682670	T	T	131682670	1	4	74	0	1	0	0	0	0	0	0	0	10794	319	11	5		5	NTM	11	131682670	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5601316	131682670	3323846	921	81375											
IGSF9B	22997	broad.mit.edu	37	chr11	133790155	133790155	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggccgccgtgcgccccCggctcagccggctcggggta	17	17	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133790155	A	A	133790155	2	1	74	1	0	0	0	0	0	0	0	1	7676	639	23	1		1	IGSF9B	11	133790155	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2107485	133790155	1216361	922	81376											
NCAPD3	23310	broad.mit.edu	37	chr11	134047240	134047240	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagcgaatgcagagatcgcaCattacaatgatgacgttgtt	10	7	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134047240	G	G	134047240	3	3	74	1	0	0	0	0	1	0	0	0	10301	478	17	4	1653	4	NCAPD3	11	134047240	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	257085	134047240	959276	923	81377											
CACNA2D4	93589	broad.mit.edu	37	chr12	2022228	2022228	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccgcagcatgttctccatGtcctctgagaacttcctcac	6	16	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2022228	A	A	2022228	2	1	74	1	0	0	0	0	0	0	0	1	2577	1368	48	4		4	CACNA2D4	12	2022228	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08		2022228	131829667	924	81378											
CACNA1C	775	broad.mit.edu	37	chr12	2659868	2659868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctccacctggggggcggGgcagggcggcatctcccttc	16	14	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2659868	T	T	2659868	1	4	74	0	1	0	0	0	0	0	0	0	2566	1247	43	2		2	CACNA1C	12	2659868	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	637640	2659868	131192027	925	81379											
CACNA1C	775	broad.mit.edu	37	chr12	2693607	2693607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgccccacatcccccgtGcccctgtgcccaccaaaacc	6	23	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2693607	T	T	2693607	1	4	74	0	1	0	0	0	0	0	0	0	2566	1334	46	3		3	CACNA1C	12	2693607	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	33739	2693607	131158288	926	81380											
ING4	51147	broad.mit.edu	37	chr12	6761907	6761907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttggaacgagcacgagCagctttcttctccttttgag	9	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6761907	A	A	6761907	3	1	74	1	0	0	0	0	1	0	0	0	7808	710	25	3	344	3	ING4	12	6761907	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4068300	6761907	127089988	927	81381											
ACSM4	341392	broad.mit.edu	37	chr12	7475905	7475905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaatgctgccctatgatGtccaggtaggttgagaaaat	12	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7475905	T	T	7475905	3	4	74	1	0	0	0	0	1	0	0	0	186	1377	48	3	1231	3	ACSM4	12	7475905	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	713998	7475905	126375990	928	81382											
CD163L1	283316	broad.mit.edu	37	chr12	7531614	7531614	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccatatttaaatgacacgcAgtctgtttccactcccatcg	5	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7531614	T	T	7531614	2	4	74	1	0	0	0	0	0	0	0	1	2998	175	7	5		5	CD163L1	12	7531614	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	55709	7531614	126320281	929	81383											
CD163	9332	broad.mit.edu	37	chr12	7633740	7633740	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacccctgggcaatagacccTccaagaacccacagacctga	7	16	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7633740	A	A	7633740	1	1	74	0	1	0	0	0	0	0	0	0	2997	1566	54	5		5	CD163	12	7633740	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	102126	7633740	126218155	930	81384											
PZP	5858	broad.mit.edu	37	chr12	9307398	9307398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagatgccccactggtgcCttgggtctctgagggcgctc	13	12	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9307398	A	A	9307398	3	1	74	1	0	0	0	0	1	0	0	0	12977	680	24	2	892	2	PZP	12	9307398	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1673658	9307398	124544497	931	81385											
DDX47	51202	broad.mit.edu	37	chr12	12955502	12955503	+	Intron	DNP	GG	TT	TT													aaggctgagcagagttgtttGggaaagtgggagaaagatgc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	12955503	TT	TT	12955502	1	4	74	0	1	0	0	0	0	0	0	0	4398	1363	47	2		2	DDX47	12	12955502	Intron	DNP	GG	TCGA-17-Z045-01A-01W-0746-08	3648104	12955502	120896393	932	81386											
GPRC5A	9052	broad.mit.edu	37	chr12	13063367	13063367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcatttcaagggccactGtcagctttctcccttaaaat	5	12	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13063367	A	A	13063367	1	1	74	0	1	0	0	0	0	0	0	0	6790	1392	48	4		4	GPRC5A	12	13063367	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	107865	13063367	120788528	933	81387											
ART4	420	broad.mit.edu	37	chr12	14994133	14994133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatttttcaaatcagatgGtgaatgtggttgcagatttg	10	3	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14994133	T	T	14994133	1	4	74	0	1	0	0	0	0	0	0	0	1003	1276	44	3		3	ART4	12	14994133	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1930766	14994133	118857762	934	81388											
SLCO1C1	53919	broad.mit.edu	37	chr12	20874846	20874846	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgtgcctttctggtattTaccaaagagtttaccaagat	8	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20874846	A	A	20874846	4	1	74	1	0	0	0	0	0	1	0	0	14839	1764	61	5	910	5	SLCO1C1	12	20874846	Nonsense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	5880713	20874846	112977049	935	81389											
OVCH1	341350	broad.mit.edu	37	chr12	29644166	29644166	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggttcatggataaatacGccatgttgaatatatttgga	10	4	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29644166	C	C	29644166	1	2	74	0	1	0	0	0	0	0	0	0	11417	1102	38	4		4	OVCH1	12	29644166	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8769320	29644166	104207729	936	81390											
IPO8	10526	broad.mit.edu	37	chr12	30792623	30792623	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcactagttttgaccCctcgagttaatctctccaaa	6	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30792623	G	G	30792623	3	3	74	1	0	0	0	0	1	0	0	0	7868	623	22	4	818	4	IPO8	12	30792623	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1148457	30792623	103059272	937	81391											
C12orf35	55196	broad.mit.edu	37	chr12	32134159	32134159	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcctcacacacttcagtAgaaagaataacatatgcaaa	7	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32134159	G	G	32134159	2	3	74	1	0	0	0	0	0	0	0	1	1695	407	15	5		5	C12orf35	12	32134159	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1341536	32134159	101717736	938	81392											
C12orf40	283461	broad.mit.edu	37	chr12	40037789	40037789	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtttagtcttctaattagTttgtaatttttgagctcaaa	6	4	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40037789	A	A	40037789	1	1	74	0	1	0	0	0	0	0	0	0	1699	1740	60	5		5	C12orf40	12	40037789	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	7903630	40037789	93814106	939	81393											
LRRK2	120892	broad.mit.edu	37	chr12	40734092	40734092	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatttcctgtgcattttctgGcagatacctccactcagcca	7	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40734092	C	C	40734092	1	2	74	0	1	0	0	0	0	0	0	0	9120	1218	42	4		4	LRRK2	12	40734092	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	696303	40734092	93117803	940	81394											
CNTN1	1272	broad.mit.edu	37	chr12	41330595	41330595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttagcattccctgagtGggtagaacacatcaatgaca	8	9	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41330595	T	T	41330595	3	4	74	1	0	0	0	0	1	0	0	0	3672	1357	47	2	1032	2	CNTN1	12	41330595	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	596503	41330595	92521300	941	81395											
PDZRN4	29951	broad.mit.edu	37	chr12	41946494	41946494	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgttagcagtcaagagaagCtgggcctgacagtctgttac	13	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41946494	G	G	41946494	3	3	74	1	0	0	0	0	1	0	0	0	11804	796	28	4	1335	4	PDZRN4	12	41946494	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	615899	41946494	91905401	942	81396											
TMEM117	84216	broad.mit.edu	37	chr12	44782158	44782158	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatttggttctttggacgAtttttgaaaaatgagccacg	9	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44782158	G	G	44782158	2	3	74	1	0	0	0	0	0	0	0	1	16154	320	12	5		5	TMEM117	12	44782158	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2835664	44782158	89069737	943	81397											
KCNH3	23416	broad.mit.edu	37	chr12	49935289	49935289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaaactggactgccagcCcttcccccaggaaaccgcta	9	15	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49935289	A	A	49935289	1	1	74	0	1	0	0	0	0	0	0	0	8103	638	22	2		2	KCNH3	12	49935289	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5153131	49935289	83916606	944	81398											
DIP2B	57609	broad.mit.edu	37	chr12	51089567	51089567	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtaaaaatgtttttattGtggtgtattacatatgtccc	7	4	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51089567	A	A	51089567	1	1	74	0	1	0	0	0	0	0	0	0	4568	1392	48	4		4	DIP2B	12	51089567	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1154278	51089567	82762328	945	81399											
KRT85	3891	broad.mit.edu	37	chr12	52756497	52756497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggaagtcagtgacatGgtctgattgctgtgaaatat	11	6	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52756497	T	T	52756497	1	4	74	0	1	0	0	0	0	0	0	0	8570	1363	47	2		2	KRT85	12	52756497	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1666930	52756497	81095398	946	81400											
KRT84	3890	broad.mit.edu	37	chr12	52778620	52778620	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgtcggaatctatcccaCcatgcagctcgtcctctggc	8	16	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52778620	T	T	52778620	1	4	74	0	1	0	0	0	0	0	0	0	8569	522	18	4		4	KRT84	12	52778620	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	22123	52778620	81073275	947	81401											
KRT5	3852	broad.mit.edu	37	chr12	52913845	52913845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcctgaagctgccaccaCtagtgctgatggatatcctc	10	12	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52913845	A	A	52913845	3	1	74	1	0	0	0	0	1	0	0	0	8550	565	20	3	1572	3	KRT5	12	52913845	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	135225	52913845	80938050	948	81402											
KRT71	112802	broad.mit.edu	37	chr12	52941473	52941473	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttggagtgagtcagagatGagtagcccccagggacgtcc	14	11	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52941473	T	T	52941473	1	4	74	0	1	0	0	0	0	0	0	0	8555	1305	45	3		3	KRT71	12	52941473	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	27628	52941473	80910422	949	81403											
KRT76	51350	broad.mit.edu	37	chr12	53169122	53169122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcccaaattaggaccacaCctccctgctaattccccaga	4	16	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53169122	A	A	53169122	1	1	74	0	1	0	0	0	0	0	0	0	8560	522	18	3		3	KRT76	12	53169122	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	227649	53169122	80682773	950	81404											
HOXC4	3221	broad.mit.edu	37	chr12	54448764	54448764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaaggatcgagatcgcCcactcgctgtgcctctctga	12	12	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54448764	A	A	54448764	2	1	74	1	0	0	0	0	0	0	0	1	7380	610	22	2		2	HOXC4	12	54448764	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1279642	54448764	79403131	951	81405											
LACRT	90070	broad.mit.edu	37	chr12	55026991	55026991	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttcctgggcaggatcagCacccgtcgagtcagaggagg	15	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55026991	G	G	55026991	3	3	74	1	0	0	0	0	1	0	0	0	8668	710	25	4	347	4	LACRT	12	55026991	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	578227	55026991	78824904	952	81406											
NEUROD4	58158	broad.mit.edu	37	chr12	55420716	55420716	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtaaagggctctctcagCccacaagcaacctggtggct	11	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55420716	G	G	55420716	3	3	74	1	0	0	0	0	1	0	0	0	10445	739	26	4	495	4	NEUROD4	12	55420716	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	393725	55420716	78431179	953	81407											
OR6C74	254783	broad.mit.edu	37	chr12	55641839	55641839	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatggcagctgcatcttcatGtatgtgaaaccctcagcaaa	8	10	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55641839	C	C	55641839	3	2	74	1	0	0	0	0	1	0	0	0	11292	1377	48	4	770	4	OR6C74	12	55641839	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	221123	55641839	78210056	954	81408											
OR6C65	403282	broad.mit.edu	37	chr12	55794780	55794780	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttctcattatttttccCcccgtgattatgggcctcca	7	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55794780	A	A	55794780	2	1	74	1	0	0	0	0	0	0	0	1	11289	610	22	2		2	OR6C65	12	55794780	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	152941	55794780	78057115	955	81409											
MMP19	4327	broad.mit.edu	37	chr12	56234974	56234974	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgcgggcccttgtggcatCatccagctgacctgagactg	12	13	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56234974	T	T	56234974	3	4	74	1	0	0	0	0	1	0	0	0	9750	826	29	4	1334	4	MMP19	12	56234974	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	440194	56234974	77616921	956	81410											
MYL6	4637	broad.mit.edu	37	chr12	56552145	56552145	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgggccgagagtcggagcCattactgcaggaaaaggtcc	15	9	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56552145	G	G	56552145	1	3	74	0	1	0	0	0	0	0	0	0	10145	609	21	4		4	MYL6	12	56552145	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	317171	56552145	77299750	957	81411											
PAN2	9924	broad.mit.edu	37	chr12	56712181	56712181	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaagggctgtgcgggcatcCtcaatactgtcatgggtttc	13	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56712181	G	G	56712181	3	3	74	1	0	0	0	0	1	0	0	0	11508	680	24	4	202	4	PAN2	12	56712181	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	160036	56712181	77139714	958	81412											
KIF5A	3798	broad.mit.edu	37	chr12	57969111	57969111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagaaagaaggctactctGgggttatggctaaaactcct	13	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57969111	A	A	57969111	1	1	74	0	1	0	0	0	0	0	0	0	8375	1363	47	4		4	KIF5A	12	57969111	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1256930	57969111	75882784	959	81413											
B4GALNT1	2583	broad.mit.edu	37	chr12	58024400	58024400	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacaatagagaactttcCacctattcttcttattgagg	5	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58024400	A	A	58024400	1	1	74	0	1	0	0	0	0	0	0	0	1271	609	21	2		2	B4GALNT1	12	58024400	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	55289	58024400	75827495	960	81414											
XRCC6BP1	91419	broad.mit.edu	37	chr12	58340696	58340696	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggatttactatatggtgGagggtctcctgagccctggc	15	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58340696	T	T	58340696	1	4	74	0	1	0	0	0	0	0	0	0	17585	1189	41	3		3	XRCC6BP1	12	58340696	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	316296	58340696	75511199	961	81415											
DPY19L2	283417	broad.mit.edu	37	chr12	63974458	63974458	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacctgatgtggtactgtaTttgatccactgtaaaagttc	8	8	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63974458	G	G	63974458	3	3	74	1	0	0	0	0	1	0	0	0	4781	1490	52	5	408	5	DPY19L2	12	63974458	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	5633762	63974458	69877437	962	81416											
PTPRB	5787	broad.mit.edu	37	chr12	70931903	70931903	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccacccaccaaagcctcaTcctgaacactatggcctagt	6	16	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70931903	A	A	70931903	1	1	74	0	1	0	0	0	0	0	0	0	12904	1450	50	5		5	PTPRB	12	70931903	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	6957445	70931903	62919992	963	81417											
PTPRB	5787	broad.mit.edu	37	chr12	71029634	71029634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcaggtccatcggggtgCctgggaacagcggtccaaga	15	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71029634	A	A	71029634	3	1	74	1	0	0	0	0	1	0	0	0	12904	739	26	3	6569	3	PTPRB	12	71029634	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	97731	71029634	62822261	964	81418											
PTPRR	5801	broad.mit.edu	37	chr12	71050357	71050357	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataatgcatatacttaagcAttttacaagcatctctacag	4	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71050357	T	T	71050357	1	4	74	0	1	0	0	0	0	0	0	0	12918	232	8	5		5	PTPRR	12	71050357	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	20723	71050357	62801538	965	81419											
PTPRR	5801	broad.mit.edu	37	chr12	71054684	71054684	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgactttacaaagaatgggCcattgcttagacagaaagga	11	6	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71054684	G	G	71054684	1	3	74	0	1	0	0	0	0	0	0	0	12918	754	26	4		4	PTPRR	12	71054684	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4327	71054684	62797211	966	81420											
OSBPL8	114882	broad.mit.edu	37	chr12	76763016	76763016	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtacgatgtttcactTtggtctgaataacaccatct	8	8	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76763016	C	C	76763016	3	2	74	1	0	0	0	0	1	0	0	0	11377	1841	64	5	379	5	OSBPL8	12	76763016	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	5708332	76763016	57088879	967	81421											
OSBPL8	114882	broad.mit.edu	37	chr12	76769070	76769070	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacctttagtttaaattcaaGtattgcactgtatccagttt	5	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76769070	C	C	76769070	3	2	74	1	0	0	0	0	1	0	0	0	11377	1029	36	4	891	4	OSBPL8	12	76769070	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6054	76769070	57082825	968	81422											
NAV3	89795	broad.mit.edu	37	chr12	78415527	78415527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcatggttaatttcagGgcacattcagaaaatgaagg	9	5	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78415527	T	T	78415527	3	4	74	1	0	0	0	0	1	0	0	0	10279	1246	43	2	1942	2	NAV3	12	78415527	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1646457	78415527	55436368	969	81423											
NAV3	89795	broad.mit.edu	37	chr12	78522559	78522559	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctcattctactggagggCttcaggacactggcaaccag	11	11	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78522559	T	T	78522559	3	4	74	1	0	0	0	0	1	0	0	0	10279	797	28	4	4424	4	NAV3	12	78522559	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	107032	78522559	55329336	970	81424											
MYF6	4618	broad.mit.edu	37	chr12	81102421	81102421	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagggctctgggccgcacCagagaaaatccgggaggtgg	16	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81102421	G	G	81102421	1	3	74	0	1	0	0	0	0	0	0	0	10122	609	21	4		4	MYF6	12	81102421	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2579862	81102421	52749474	971	81425											
MYF6	4618	broad.mit.edu	37	chr12	81102806	81102806	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgacccttcctggcctaatcCtttagattaggtcacattac	6	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81102806	G	G	81102806	1	3	74	0	1	0	0	0	0	0	0	0	10122	696	24	4		4	MYF6	12	81102806	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	385	81102806	52749089	972	81426											
ACSS3	79611	broad.mit.edu	37	chr12	81537007	81537007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatattctttacacatctgGcacaacggggttacctaagg	9	9	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81537007	T	T	81537007	3	4	74	1	0	0	0	0	1	0	0	0	190	1203	42	3	920	3	ACSS3	12	81537007	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	434201	81537007	52314888	973	81427											
PPFIA2	8499	broad.mit.edu	37	chr12	81732932	81732932	+	Intron	DEL	G	-	-													tgactaaaatgagtggcagtGgaaagtcttaacacatgcat							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81732932	-	-	81732932	6	5	74	0	1	1	0	1	0	0	0	0	12406	1363	47	0		0	PPFIA2	12	81732932	Intron	DEL	G	TCGA-17-Z045-01A-01W-0746-08	195925	81732932	52118963	974	81428											
TMTC2	160335	broad.mit.edu	37	chr12	83444837	83444837	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcctcaaagcctaggctttGagagggtaattaattatacg	10	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83444837	C	C	83444837	1	2	74	0	1	0	0	0	0	0	0	0	16384	1305	45	4		4	TMTC2	12	83444837	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1711905	83444837	50407058	975	81429											
SLC6A15	55117	broad.mit.edu	37	chr12	85264382	85264382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacatcactgaccagaagGgagatgcaggaaaatgtgtc	11	7	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85264382	T	T	85264382	3	4	74	1	0	0	0	0	1	0	0	0	14792	1232	43	2	838	2	SLC6A15	12	85264382	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1819545	85264382	48587513	976	81430											
LRRIQ1	84125	broad.mit.edu	37	chr12	85466712	85466712	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctttctggaagaaaaacTtgttgacaatgcagggttct	9	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85466712	A	A	85466712	3	1	74	1	0	0	0	0	1	0	0	0	9116	1609	56	5	2761	5	LRRIQ1	12	85466712	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	202330	85466712	48385183	977	81431											
LRRIQ1	84125	broad.mit.edu	37	chr12	85546867	85546867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaatccagctcaagcatgGttatgtaatgacaaagaaaa	8	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85546867	T	T	85546867	3	4	74	1	0	0	0	0	1	0	0	0	9116	1270	44	3	4567	3	LRRIQ1	12	85546867	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	80155	85546867	48305028	978	81432											
ALX1	8092	broad.mit.edu	37	chr12	85677339	85677339	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactgttgtttttcctccTctgggtacagtgaactatgg	10	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85677339	C	C	85677339	1	2	74	0	1	0	0	0	0	0	0	0	556	1566	54	5		5	ALX1	12	85677339	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	130472	85677339	48174556	979	81433											
MGAT4C	25834	broad.mit.edu	37	chr12	86373695	86373695	+	Frame_Shift_Del	DEL	G	-	-													ataaaaaatgggccaaacgtGggagatcatgagaatgatag					rs141479653		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86373695	-	-	86373695	7	5	74	1	0	1	0	1	0	0	0	0	9640	1348	47	0	631	0	MGAT4C	12	86373695	Frame_Shift_Del	DEL	G	TCGA-17-Z045-01A-01W-0746-08	696356	86373695	47478200	980	81434											
C12orf50	160419	broad.mit.edu	37	chr12	88376957	88376957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgaatcattatatgatGttgacgtatatttgtctgag	10	4	2	4	rs141441001		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88376957	T	T	88376957	3	4	74	1	0	0	0	0	1	0	0	0	1708	1377	48	3	110	3	C12orf50	12	88376957	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2003262	88376957	45474938	981	81435											
POC1B	282809	broad.mit.edu	37	chr12	89895933	89895933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcagttttagaggaaagtGgaccttccaggctcaataat	9	8	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89895933	A	A	89895933	1	1	74	0	1	0	0	0	0	0	0	0	12271	1363	47	4		4	POC1B	12	89895933	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1518976	89895933	43955962	982	81436											
ATP2B1	490	broad.mit.edu	37	chr12	89993111	89993111	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgaacttagaaataaatcAtatcaagtaaaggtaagctg	7	4	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89993111	G	G	89993111	1	3	74	0	1	0	0	0	0	0	0	0	1143	232	8	5		5	ATP2B1	12	89993111	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	97178	89993111	43858784	983	81437											
LUM	4060	broad.mit.edu	37	chr12	91502284	91502284	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaaggtcaggtttaccAatccttcaaaagagcccagc	10	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91502284	T	T	91502284	4	4	74	1	0	0	0	0	0	1	0	0	9172	131	5	5	551	5	LUM	12	91502284	Nonsense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1509173	91502284	42349611	984	81438											
DCN	1634	broad.mit.edu	37	chr12	91558307	91558307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggtacatagtactcttGgccttatctaggtagtgttt	10	6	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91558307	T	T	91558307	1	4	74	0	1	0	0	0	0	0	0	0	4330	1363	47	2		2	DCN	12	91558307	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	56023	91558307	42293588	985	81439											
PLEKHG7	440107	broad.mit.edu	37	chr12	93150195	93150195	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcttcctttaaaaaaccCaacatctgtgccgccttgta	5	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93150195	G	G	93150195	1	3	74	0	1	0	0	0	0	0	0	0	12170	609	21	4		4	PLEKHG7	12	93150195	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1591888	93150195	40701700	986	81440											
CCDC38	120935	broad.mit.edu	37	chr12	96310885	96310885	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatattcaaaatgatgttcTtaaagagtaatttagactca	5	4	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96310885	A	A	96310885	1	1	74	0	1	0	0	0	0	0	0	0	2837	1624	56	5		5	CCDC38	12	96310885	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3160690	96310885	37541010	987	81441											
NEDD1	121441	broad.mit.edu	37	chr12	97334303	97334303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaggtgacatgttctcaCctatcagagatggtaagtct	10	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97334303	A	A	97334303	3	1	74	1	0	0	0	0	1	0	0	0	10404	507	18	3	1289	3	NEDD1	12	97334303	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1023418	97334303	36517592	988	81442											
NT5DC3	51559	broad.mit.edu	37	chr12	104179254	104179254	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgctttagggtcaaatcCtgatcacaaagatcacgaaa	7	10	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104179254	A	A	104179254	5	1	74	1	0	0	0	0	0	0	1	0	10787	695	24	2	470	2	NT5DC3	12	104179254	Splice_Site	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6844951	104179254	29672641	989	81443											
SLC41A2	84102	broad.mit.edu	37	chr12	105280131	105280131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagagttataaggtcgcCaaaactagcagcaatgggtg	13	7	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105280131	A	A	105280131	3	1	74	1	0	0	0	0	1	0	0	0	14744	594	21	2	778	2	SLC41A2	12	105280131	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1100877	105280131	28571764	990	81444											
NUAK1	9891	broad.mit.edu	37	chr12	106464710	106464710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagagacagcacatataGgagagctgggaaacagatcc	13	8	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106464710	T	T	106464710	1	4	74	0	1	0	0	0	0	0	0	0	10807	1015	35	2		2	NUAK1	12	106464710	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1184579	106464710	27387185	991	81445											
RFX4	5992	broad.mit.edu	37	chr12	107047946	107047946	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggaggactagaaagaacaGaccgttcttgcttggggaag	14	7	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107047946	T	T	107047946	1	4	74	0	1	0	0	0	0	0	0	0	13373	957	33	3		3	RFX4	12	107047946	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	583236	107047946	26803949	992	81446											
WSCD2	9671	broad.mit.edu	37	chr12	108618608	108618608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatgctgaacatgtctgtgGacaaatgcgtggacttctgc	11	10	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108618608	T	T	108618608	3	4	74	1	0	0	0	0	1	0	0	0	17534	1174	41	3	789	3	WSCD2	12	108618608	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1570662	108618608	25233287	993	81447											
CMKLR1	1240	broad.mit.edu	37	chr12	108686401	108686401	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgagaaggaagttgctgatCttgcacatggctgtcccgaa	12	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108686401	A	A	108686401	3	1	74	1	0	0	0	0	1	0	0	0	3611	912	32	3	786	3	CMKLR1	12	108686401	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	67793	108686401	25165494	994	81448											
TMEM119	338773	broad.mit.edu	37	chr12	108985620	108985620	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggggacttgaggttctgGgtggcggccaagatgtcggc	20	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108985620	A	A	108985620	2	1	74	1	0	0	0	0	0	0	0	1	16155	1219	43	4		4	TMEM119	12	108985620	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	299219	108985620	24866275	995	81449											
UNG	7374	broad.mit.edu	37	chr12	109539744	109539744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggacaggatccatatcatgGacctaatcaagctcacgggc	11	11	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109539744	T	T	109539744	3	4	74	1	0	0	0	0	1	0	0	0	17125	1174	41	3	592	3	UNG	12	109539744	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	554124	109539744	24312151	996	81450											
ACACB	32	broad.mit.edu	37	chr12	109691979	109691979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagaggtattattgacaaGcaccacagactaagtcagag	9	8	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109691979	A	A	109691979	1	1	74	0	1	0	0	0	0	0	0	0	107	986	34	4		4	ACACB	12	109691979	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	152235	109691979	24159916	997	81451											
UBE3B	89910	broad.mit.edu	37	chr12	109940927	109940927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaagtccagaaggtttGcaacatctgtgtcctctacc	9	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109940927	T	T	109940927	3	4	74	1	0	0	0	0	1	0	0	0	17006	1319	46	3	1428	3	UBE3B	12	109940927	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	248948	109940927	23910968	998	81452											
ANAPC7	51434	broad.mit.edu	37	chr12	110815423	110815423	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtaacattcgataagacCtgaaaaaagtaaaacacgtg	7	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110815423	A	A	110815423	5	1	74	1	0	0	0	0	0	0	1	0	606	695	24	2	581	2	ANAPC7	12	110815423	Splice_Site	SNP	C	TCGA-17-Z045-01A-01W-0746-08	874496	110815423	23036472	999	81453											
PPTC7	160760	broad.mit.edu	37	chr12	110989587	110989587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaacacataagataccCacttaccgagcaaagggact	8	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110989587	A	A	110989587	1	1	74	0	1	0	0	0	0	0	0	0	12514	609	21	2		2	PPTC7	12	110989587	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	174164	110989587	22862308	1000	81454											
RPH3A	22895	broad.mit.edu	37	chr12	113267192	113267193	+	Intron	INS	-	A	A													tcaagcaatcctcttgtctcINSagcctcctgagtagcttgga					rs145515091	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113267193	A	A	113267192	6	5	74	0	1	1	1	0	0	0	0	0	13662	841	29	0		0	RPH3A	12	113267192	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	2277605	113267192	20584703	1001	81455											
RBM19	9904	broad.mit.edu	37	chr12	114386694	114386694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtgtagggcaggttcCgtacaaagagccttccggat	14	9	0	1	rs139661395		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114386694	A	A	114386694	3	1	74	1	0	0	0	0	1	0	0	0	13229	652	23	1	1722	1	RBM19	12	114386694	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1119502	114386694	19465201	1002	81456											
TBX5	6910	broad.mit.edu	37	chr12	114841357	114841357	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caataaagtagatggcaataCgctagcatttggggagacag	12	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114841357	G	G	114841357	1	3	74	0	1	0	0	0	0	0	0	0	15783	551	19	4		4	TBX5	12	114841357	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	454663	114841357	19010538	1003	81457											
TBX3	6926	broad.mit.edu	37	chr12	115120535	115120535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagccgtaataaccgacCaaccgactgttctgggagca	9	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115120535	A	A	115120535	1	1	74	0	1	0	0	0	0	0	0	0	15781	609	21	2		2	TBX3	12	115120535	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	279178	115120535	18731360	1004	81458											
SRRM4	84530	broad.mit.edu	37	chr12	119563141	119563141	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcactctcccttttttacTctctctctcctctcctctga	1	18	6	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119563141	C	C	119563141	1	2	74	0	1	0	0	0	0	0	0	0	15289	1566	54	5		5	SRRM4	12	119563141	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4442606	119563141	14288754	1005	81459											
ZCCHC8	55596	broad.mit.edu	37	chr12	122958517	122958517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaggcaacggaattgcCagttaaaggtgtgtccacag	13	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122958517	A	A	122958517	3	1	74	1	0	0	0	0	1	0	0	0	17720	594	21	2	476	2	ZCCHC8	12	122958517	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3395376	122958517	10893378	1006	81460											
C12orf65	91574	broad.mit.edu	37	chr12	123738429	123738429	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtttgtgaaaggacacggtCcagggggccaggcaaccaac	14	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123738429	T	T	123738429	3	4	74	1	0	0	0	0	1	0	0	0	1721	855	30	4	210	4	C12orf65	12	123738429	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	779912	123738429	10113466	1007	81461											
TMEM132B	114795	broad.mit.edu	37	chr12	126068497	126068497	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttctgtggtcgatgtgtCtgagtctgtggaatgcaagt	15	5	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126068497	T	T	126068497	3	4	74	1	0	0	0	0	1	0	0	0	16169	913	32	4	1397	4	TMEM132B	12	126068497	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2330068	126068497	7783398	1008	81462											
TMEM132D	121256	broad.mit.edu	37	chr12	129822142	129822142	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcgccttcccctcccccgAgttcagttctaacagcccag	8	19	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129822142	T	T	129822142	1	4	74	0	1	0	0	0	0	0	0	0	16170	319	11	5		5	TMEM132D	12	129822142	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3753645	129822142	4029753	1009	81463											
PIWIL1	9271	broad.mit.edu	37	chr12	130838877	130838878	+	Intron	DNP	GG	AT	AT													cagtttttaggaaaaagataGggcactcagtagagcataga							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	130838878	AT	AT	130838877	1	1	74	0	1	0	0	0	0	0	0	0	12052	1015	35	4		4	PIWIL1	12	130838877	Intron	DNP	GG	TCGA-17-Z045-01A-01W-0746-08	1016735	130838877	3013018	1010	81464											
RIMBP2	23504	broad.mit.edu	37	chr12	130963582	130963582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggggacagagagaggcCtggctgagcagggcagcctg	19	9	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130963582	A	A	130963582	1	1	74	0	1	0	0	0	0	0	0	0	13472	696	24	2		2	RIMBP2	12	130963582	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	124705	130963582	2888313	1011	81465											
EP400	57634	broad.mit.edu	37	chr12	132466655	132466656	+	Frame_Shift_Ins	INS	-	G	G													aggaggaatgccccccacgcINScgcaggccgcgcagctcgct							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132466656	G	G	132466655	7	5	74	1	0	1	1	0	0	0	0	0	5191	739	26	0	1572	0	EP400	12	132466655	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	1503073	132466655	1385240	1012	81466											
CENPJ	55835	broad.mit.edu	37	chr13	25473749	25473749	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaaactatgttatcacCtaaggagaccatctcagtgc	7	11	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25473749	G	G	25473749	1	3	74	0	1	0	0	0	0	0	0	0	3264	696	24	4		4	CENPJ	13	25473749	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08		25473749	89696129	1013	81467											
PABPC3	5042	broad.mit.edu	37	chr13	25670841	25670841	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctaaatggtcgcaaagtaTttgttggacaatttaagtct	8	6	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25670841	A	A	25670841	3	1	74	1	0	0	0	0	1	0	0	0	11459	1493	52	5	507	5	PABPC3	13	25670841	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	197092	25670841	89499037	1014	81468											
FLT1	2321	broad.mit.edu	37	chr13	28915155	28915155	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaacttttcaatgtcctgtAtacccgagccctgagaaaca	6	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28915155	G	G	28915155	1	3	74	0	1	0	0	0	0	0	0	0	5999	464	16	5		5	FLT1	13	28915155	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3244314	28915155	86254723	1015	81469											
MTUS2	23281	broad.mit.edu	37	chr13	30046251	30046251	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcactgtaacctctgccTcccgagttcaagcgattctc	8	15	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30046251	C	C	30046251	1	2	74	0	1	0	0	0	0	0	0	0	10060	1566	54	5		5	MTUS2	13	30046251	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1131096	30046251	85123627	1016	81470											
POSTN	10631	broad.mit.edu	37	chr13	38160333	38160333	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacacctcgtggaagtttctCaaaagcctcattggtgggag	12	9	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38160333	G	G	38160333	3	3	74	1	0	0	0	0	1	0	0	0	12354	835	29	4	1740	4	POSTN	13	38160333	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8114082	38160333	77009545	1017	81471											
TRPC4	7223	broad.mit.edu	37	chr13	38213370	38213370	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattttagtgaaaatttcAagacatagtacaaggacaac	6	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38213370	T	T	38213370	1	4	74	0	1	0	0	0	0	0	0	0	16705	145	5	5		5	TRPC4	13	38213370	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	53037	38213370	76956508	1018	81472											
FREM2	341640	broad.mit.edu	37	chr13	39266239	39266239	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcctattcaacaatacCagacctgtcatggtttttac	4	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39266239	A	A	39266239	2	1	74	1	0	0	0	0	0	0	0	1	6105	581	21	2		2	FREM2	13	39266239	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1052869	39266239	75903639	1019	81473											
KIAA0564	23078	broad.mit.edu	37	chr13	42249450	42249450	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctacaaacaagtcatgaCatgagccaagtattaaatta	5	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42249450	T	T	42249450	1	4	74	0	1	0	0	0	0	0	0	0	8255	493	17	4		4	KIAA0564	13	42249450	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2983211	42249450	72920428	1020	81474											
PCDH17	27253	broad.mit.edu	37	chr13	58209103	58209103	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacccgcctgcccctcagctCgccccggtcggaggtgatgt	13	17	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58209103	A	A	58209103	4	1	74	1	0	0	0	0	0	1	0	0	11606	893	31	3	2425	3	PCDH17	13	58209103	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	15959653	58209103	56960775	1021	81475											
PCDH9	5101	broad.mit.edu	37	chr13	67800785	67800785	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctccagcatctgcatctgtCactgtgattacccccacagt	6	15	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67800785	A	A	67800785	2	1	74	1	0	0	0	0	0	0	0	1	11612	813	29	3		3	PCDH9	13	67800785	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9591682	67800785	47369093	1022	81476											
DIS3	22894	broad.mit.edu	37	chr13	73346347	73346347	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtagagcatcgtctatatCagtacatcctggtgggtcta	10	8	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73346347	T	T	73346347	3	4	74	1	0	0	0	0	1	0	0	0	4575	826	29	4	1471	4	DIS3	13	73346347	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5545562	73346347	41823531	1023	81477											
SLC15A1	6564	broad.mit.edu	37	chr13	99364189	99364189	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accatcttaatttgggagatGagccgctcctgtagttggag	12	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99364189	T	T	99364189	2	4	74	1	0	0	0	0	0	0	0	1	14511	1277	45	3		3	SLC15A1	13	99364189	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	26017842	99364189	15805689	1024	81478											
NALCN	259232	broad.mit.edu	37	chr13	101795290	101795290	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaaaatgttaggtttcatGatatcttttacaaatgaaat	5	3	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101795290	A	A	101795290	1	1	74	0	1	0	0	0	0	0	0	0	10242	1305	45	4		4	NALCN	13	101795290	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2431101	101795290	13374588	1025	81479											
ERCC5	2073	broad.mit.edu	37	chr13	103506168	103506168	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaaaacgacagagaagcTtctgaaaacatttttgaaaa	8	6	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103506168	G	G	103506168	3	3	74	1	0	0	0	0	1	0	0	0	5258	1609	56	5	336	5	ERCC5	13	103506168	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1710878	103506168	11663710	1026	81480											
COL4A1	1282	broad.mit.edu	37	chr13	110864722	110864722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttaatatgcaaaaattaCgtaaacacacacaaaaagga	4	8	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110864722	A	A	110864722	1	1	74	0	1	0	0	0	0	0	0	0	3721	551	19	3		3	COL4A1	13	110864722	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	7358554	110864722	4305156	1027	81481											
COL4A2	1284	broad.mit.edu	37	chr13	111109666	111109666	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtccgtggggctcatgccCtgcatctgtggttgtctctc	13	13	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111109666	A	A	111109666	1	1	74	0	1	0	0	0	0	0	0	0	3722	696	24	2		2	COL4A2	13	111109666	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	244944	111109666	4060212	1028	81482											
COL4A2	1284	broad.mit.edu	37	chr13	111130465	111130465	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggattcccaggagctccTggccaagaggggcccttggg	15	12	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111130465	A	A	111130465	2	1	74	1	0	0	0	0	0	0	0	1	3722	1567	55	5		5	COL4A2	13	111130465	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	20799	111130465	4039413	1029	81483											
OR4N2	390429	broad.mit.edu	37	chr14	20295777	20295777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaccctgggctcacagCccccctctatttctttctgg	8	16	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20295777	A	A	20295777	3	1	74	1	0	0	0	0	1	0	0	0	11171	739	26	3	172	3	OR4N2	14	20295777	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08		20295777	87053763	1030	81484											
TEP1	7011	broad.mit.edu	37	chr14	20837665	20837665	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatgttacctgtggtccaTtctccttctgggctgcattt	8	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20837665	C	C	20837665	2	2	74	1	0	0	0	0	0	0	0	1	15881	1490	52	5		5	TEP1	14	20837665	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	541888	20837665	86511875	1031	81485											
RNASE10	338879	broad.mit.edu	37	chr14	20978543	20978543	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaccccagatacaatgctgTagggcttagtgagattacag	11	8	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20978543	C	C	20978543	1	2	74	0	1	0	0	0	0	0	0	0	13511	1653	57	5		5	RNASE10	14	20978543	5'Flank	SNP	T	TCGA-17-Z045-01A-01W-0746-08	140878	20978543	86370997	1032	81486											
RNASE7	84659	broad.mit.edu	37	chr14	21511722	21511722	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttcccctcatctcttGgggctgttcctggttcagcc	8	15	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21511722	T	T	21511722	1	4	74	0	1	0	0	0	0	0	0	0	13519	1363	47	2		2	RNASE7	14	21511722	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	533179	21511722	85837818	1033	81487											
FLJ10357	55701	broad.mit.edu	37	chr14	21549279	21549279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagtggaggctgaggggCccatctcctaggtttttgct	13	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21549279	A	A	21549279	1	1	74	0	1	0	0	0	0	0	0	0	5983	754	26	3		3	FLJ10357	14	21549279	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	37557	21549279	85800261	1034	81488											
SUPT16H	11198	broad.mit.edu	37	chr14	21821759	21821760	+	Intron	INS	-	G	G													ttaagcgttagtcatcatgcINSgggaacagaatggaacgaca							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21821760	G	G	21821759	6	5	74	0	1	1	1	0	0	0	0	0	15514	783	27	0		0	SUPT16H	14	21821759	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	272480	21821759	85527781	1035	81489											
CDH24	64403	broad.mit.edu	37	chr14	23523705	23523705	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggctcaggtggcagcaatGgccccttactctgtgggaac	13	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23523705	A	A	23523705	1	1	74	0	1	0	0	0	0	0	0	0	3139	1363	47	4		4	CDH24	14	23523705	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1701946	23523705	83825835	1036	81490											
EFS	10278	broad.mit.edu	37	chr14	23827927	23827927	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggtccagttccttcctGtagatttctaacttgcctcc	6	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23827927	C	C	23827927	1	2	74	0	1	0	0	0	0	0	0	0	4999	1392	48	4		4	EFS	14	23827927	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	304222	23827927	83521613	1037	81491											
CMTM5	116173	broad.mit.edu	37	chr14	23848127	23848127	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catattgtgtgaggggtatcCtatggaggggttcagaatcc	14	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23848127	G	G	23848127	1	3	74	0	1	0	0	0	0	0	0	0	3618	696	24	4		4	CMTM5	14	23848127	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	20200	23848127	83501413	1038	81492											
REC8	9985	broad.mit.edu	37	chr14	24642162	24642162	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacccccgcagcccggcctGccgcggccccgcttctccct	9	24	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24642162	T	T	24642162	2	4	74	1	0	0	0	0	0	0	0	1	13307	1306	46	3		3	REC8	14	24642162	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	794035	24642162	82707378	1039	81493											
NYNRIN	57523	broad.mit.edu	37	chr14	24877601	24877601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtccgtgggagagagtcctgGaccctttgtggacatgggga	17	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24877601	T	T	24877601	3	4	74	1	0	0	0	0	1	0	0	0	10891	1174	41	3	731	3	NYNRIN	14	24877601	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	235439	24877601	82471939	1040	81494											
STXBP6	29091	broad.mit.edu	37	chr14	25459509	25459509	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccaagctgagtaggatggGgagagttgagaaaggcccga	16	6	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25459509	A	A	25459509	1	1	74	0	1	0	0	0	0	0	0	0	15476	1247	43	4		4	STXBP6	14	25459509	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	581908	25459509	81890031	1041	81495											
PRKD1	5587	broad.mit.edu	37	chr14	30066904	30066904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagcgggggtacccaccaCtgacctccggaaagacttct	11	13	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30066904	A	A	30066904	3	1	74	1	0	0	0	0	1	0	0	0	12624	565	20	3	523	3	PRKD1	14	30066904	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4607395	30066904	77282636	1042	81496											
STRN3	29966	broad.mit.edu	37	chr14	31376381	31376381	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaagaagataaactaaagTgtacatagtggctatatcta	7	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31376381	A	A	31376381	1	1	74	0	1	0	0	0	0	0	0	0	15448	1711	59	5		5	STRN3	14	31376381	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1309477	31376381	75973159	1043	81497											
NFKBIA	4792	broad.mit.edu	37	chr14	35871818	35871818	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggagtgacaccaggtcagGattttgcaggtccactgcga	13	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35871818	C	C	35871818	3	2	74	1	0	0	0	0	1	0	0	0	10472	1174	41	4	273	4	NFKBIA	14	35871818	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4495437	35871818	71477722	1044	81498											
SLC25A21	89874	broad.mit.edu	37	chr14	37307114	37307114	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgactctacctcccagtgcCgggacagcagggtctgaaga	12	13	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37307114	A	A	37307114	1	1	74	0	1	0	0	0	0	0	0	0	14598	667	23	1		1	SLC25A21	14	37307114	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1435296	37307114	70042426	1045	81499											
FSCB	84075	broad.mit.edu	37	chr14	44975740	44975740	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgttgttccttgtccaCtttttctacaggggggatgt	11	8	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44975740	G	G	44975740	3	3	74	1	0	0	0	0	1	0	0	0	6126	565	20	4	2030	4	FSCB	14	44975740	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	7668626	44975740	62373800	1046	81500											
TRIM9	114088	broad.mit.edu	37	chr14	51489585	51489585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgctccttgttgacgcGggccagcagctgggcttttc	12	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51489585	T	T	51489585	3	4	74	1	0	0	0	0	1	0	0	0	16674	1116	39	1	1205	1	TRIM9	14	51489585	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6513845	51489585	55859955	1047	81501											
NID2	22795	broad.mit.edu	37	chr14	52535440	52535440	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttccgtgagaccgaccccAgggaagaagctgcgggaaaa	14	10	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52535440	T	T	52535440	1	4	74	0	1	0	0	0	0	0	0	0	10510	203	7	5		5	NID2	14	52535440	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1045855	52535440	54814100	1048	81502											
TXNDC16	57544	broad.mit.edu	37	chr14	52937164	52937164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattttaagtgttagcaaaGtctgagaattagaacttcta	7	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52937164	T	T	52937164	1	4	74	0	1	0	0	0	0	0	0	0	16921	1044	36	3		3	TXNDC16	14	52937164	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	401724	52937164	54412376	1049	81503											
FERMT2	10979	broad.mit.edu	37	chr14	53326377	53326377	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccagtgctggcatccatccGaatcagtctgttgtatgcaa	9	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53326377	A	A	53326377	3	1	74	1	0	0	0	0	1	0	0	0	5875	1057	37	4	279	4	FERMT2	14	53326377	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	389213	53326377	54023163	1050	81504											
KIAA0586	9786	broad.mit.edu	37	chr14	58917366	58917366	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttggagacaccagcacctcGcagatttgctcctgtacctg	9	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58917366	A	A	58917366	3	1	74	1	0	0	0	0	1	0	0	0	8256	1087	38	4	1061	4	KIAA0586	14	58917366	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5590989	58917366	48432174	1051	81505											
RTN1	6252	broad.mit.edu	37	chr14	60076864	60076864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaatggcatgccctctaGggaagcctcctaaatctcca	8	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60076864	T	T	60076864	1	4	74	0	1	0	0	0	0	0	0	0	13836	1015	35	2		2	RTN1	14	60076864	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1159498	60076864	47272676	1052	81506											
SYT16	83851	broad.mit.edu	37	chr14	62541033	62541033	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtgctttgtatggggaggGaggacaggacacagggaggg	21	4	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62541033	T	T	62541033	1	4	74	0	1	0	0	0	0	0	0	0	15591	1189	41	3		3	SYT16	14	62541033	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2464169	62541033	44808507	1053	81507											
SYT16	83851	broad.mit.edu	37	chr14	62567095	62567095	+	Intron	DEL	T	-	-													ttatcatccccaccccacccTtttttttttgtcttagatac							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62567095	-	-	62567095	6	5	74	0	1	1	0	1	0	0	0	0	15591	1624	56	0		0	SYT16	14	62567095	Intron	DEL	T	TCGA-17-Z045-01A-01W-0746-08	26062	62567095	44782445	1054	81508											
KCNH5	27133	broad.mit.edu	37	chr14	63269339	63269340	+	Intron	INS	-	A	A													ataagtgaaaaggaaagaggINSaaggggccacttcagaaaaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63269340	A	A	63269339	6	5	74	0	1	1	1	0	0	0	0	0	8105	1189	41	0		0	KCNH5	14	63269339	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	702244	63269339	44080201	1055	81509											
RHOJ	57381	broad.mit.edu	37	chr14	63749849	63749849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgccagattgatctccGtgatgacccaaaaaccttgg	8	11	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63749849	T	T	63749849	3	4	74	1	0	0	0	0	1	0	0	0	13450	1145	40	3	427	3	RHOJ	14	63749849	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	480510	63749849	43599691	1056	81510											
PPP2R5E	5529	broad.mit.edu	37	chr14	63893654	63893654	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaacagtttgtatgttagtCcaatttgggaaaaggccagt	11	6	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63893654	A	A	63893654	1	1	74	0	1	0	0	0	0	0	0	0	12497	870	30	3		3	PPP2R5E	14	63893654	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	143805	63893654	43455886	1057	81511											
HSPA2	3306	broad.mit.edu	37	chr14	65002404	65002404	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatctttttattaagaggGtaggatccaaggttagtttt	9	3	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65002404	T	T	65002404	1	4	74	0	1	0	0	0	0	0	0	0	7480	1276	44	3		3	HSPA2	14	65002404	5'Flank	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1108750	65002404	42347136	1058	81512											
C14orf50	145376	broad.mit.edu	37	chr14	65054036	65054036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacattcctcgcaggaggcGtgaagatgaggaatcaggag	14	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65054036	T	T	65054036	3	4	74	1	0	0	0	0	1	0	0	0	1790	1145	40	3	874	3	C14orf50	14	65054036	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	51632	65054036	42295504	1059	81513											
EXD2	55218	broad.mit.edu	37	chr14	69702849	69702849	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaagaaaagctcagtggtAcctggacaaaggcattggtg	13	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69702849	G	G	69702849	3	3	74	1	0	0	0	0	1	0	0	0	5340	391	14	5	775	5	EXD2	14	69702849	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	4648813	69702849	37646691	1060	81514											
GALNTL1	57452	broad.mit.edu	37	chr14	69805381	69805381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagagctctccttcagGgtgtggatgtgtggtggcag	16	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69805381	T	T	69805381	3	4	74	1	0	0	0	0	1	0	0	0	6283	1223	43	2	1019	2	GALNTL1	14	69805381	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	102532	69805381	37544159	1061	81515											
ADAM20	8748	broad.mit.edu	37	chr14	70990727	70990727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtcaaaattacatcaaCctccaaaggatgatagaagg	7	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70990727	A	A	70990727	3	1	74	1	0	0	0	0	1	0	0	0	242	507	18	3	1436	3	ADAM20	14	70990727	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1185346	70990727	36358813	1062	81516											
ADAM20	8748	broad.mit.edu	37	chr14	70991419	70991419	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatagacaaaaacatcccaAaccagagcagcagaagagtg	8	9	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70991419	T	T	70991419	3	4	74	1	0	0	0	0	1	0	0	0	242	14	1	5	2128	5	ADAM20	14	70991419	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	692	70991419	36358121	1063	81517											
SIPA1L1	26037	broad.mit.edu	37	chr14	72176309	72176309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagacatacacagcaagaGccaagccggctcgacccctc	8	16	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72176309	T	T	72176309	3	4	74	1	0	0	0	0	1	0	0	0	14442	971	34	3	4253	3	SIPA1L1	14	72176309	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1184890	72176309	35173231	1064	81518											
DPF3	8110	broad.mit.edu	37	chr14	73349479	73349479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccatccaccctgccctcCccctatcaccagcaccgcgt	5	24	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73349479	A	A	73349479	1	1	74	0	1	0	0	0	0	0	0	0	4758	638	22	2		2	DPF3	14	73349479	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1173170	73349479	34000061	1065	81519											
ACOT2	10965	broad.mit.edu	37	chr14	74035937	74035937	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttagcctgcgacggcagcCcgagaggatgtctaacaagc	13	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74035937	A	A	74035937	1	1	74	0	1	0	0	0	0	0	0	0	152	638	22	2		2	ACOT2	14	74035937	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	686458	74035937	33313603	1066	81520											
ABCD4	5826	broad.mit.edu	37	chr14	74759656	74759656	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaagacagggagcaggacgCcaagtagggccacgtggact	15	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74759656	T	T	74759656	1	4	74	0	1	0	0	0	0	0	0	0	63	754	26	4		4	ABCD4	14	74759656	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	723719	74759656	32589884	1067	81521											
MLH3	27030	broad.mit.edu	37	chr14	75489858	75489858	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcaatacagcacttgggTacaaatttatttgttgtaag	8	7	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75489858	C	C	75489858	1	2	74	0	1	0	0	0	0	0	0	0	9711	1653	57	5		5	MLH3	14	75489858	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	730202	75489858	31859682	1068	81522											
NEK9	91754	broad.mit.edu	37	chr14	75583134	75583134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcaacagagtgagaccCaaataaaacaattatctttt	7	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75583134	A	A	75583134	1	1	74	0	1	0	0	0	0	0	0	0	10426	609	21	2		2	NEK9	14	75583134	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	93276	75583134	31766406	1069	81523											
NRXN3	9369	broad.mit.edu	37	chr14	80327846	80327846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagcttcctcctcgtctGggatggtgcccaaattgcca	9	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80327846	T	T	80327846	1	4	74	0	1	0	0	0	0	0	0	0	10762	1363	47	2		2	NRXN3	14	80327846	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4744712	80327846	27021694	1070	81524											
DIO2	1734	broad.mit.edu	37	chr14	80668866	80668866	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactcagcccaatgccatttGagtagtgaaagaagtatgga	10	7	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80668866	T	T	80668866	1	4	74	0	1	0	0	0	0	0	0	0	4565	1305	45	3		3	DIO2	14	80668866	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	341020	80668866	26680674	1071	81525											
TSHR	7253	broad.mit.edu	37	chr14	81554178	81554178	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacagcccctggggtacccTgtggcgtaaatgcatatttt	10	11	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81554178	C	C	81554178	1	2	74	0	1	0	0	0	0	0	0	0	16747	1595	55	5		5	TSHR	14	81554178	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	885312	81554178	25795362	1072	81526											
TSHR	7253	broad.mit.edu	37	chr14	81610368	81610368	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaagcctctcatcactGttagcaactccaaaatcttg	5	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81610368	A	A	81610368	3	1	74	1	0	0	0	0	1	0	0	0	16747	1377	48	4	2141	4	TSHR	14	81610368	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	56190	81610368	25739172	1073	81527											
ZC3H14	79882	broad.mit.edu	37	chr14	89049271	89049271	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttgtttgagcagatagcAttctctcatttctctggtgt	8	8	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89049271	T	T	89049271	1	4	74	0	1	0	0	0	0	0	0	0	17692	232	8	5		5	ZC3H14	14	89049271	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	7438903	89049271	18300269	1074	81528											
SLC24A4	123041	broad.mit.edu	37	chr14	92959791	92959791	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatttctttgccctgcaAgcccagttcccacactctgt	6	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92959791	T	T	92959791	1	4	74	0	1	0	0	0	0	0	0	0	14582	87	3	5		5	SLC24A4	14	92959791	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3910520	92959791	14389749	1075	81529											
GLRX5	51218	broad.mit.edu	37	chr14	96010439	96010439	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actccgcccttttagatgaaAagaaagaccaagactccaag	7	11	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96010439	T	T	96010439	4	4	74	1	0	0	0	0	0	1	0	0	6526	15	1	5	457	5	GLRX5	14	96010439	Nonsense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3050648	96010439	11339101	1076	81530											
EML1	2009	broad.mit.edu	37	chr14	100380672	100380672	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcagcaggcccggcaaacActctcattttgcattatatc	6	13	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100380672	T	T	100380672	1	4	74	0	1	0	0	0	0	0	0	0	5138	174	6	5		5	EML1	14	100380672	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	4370233	100380672	6968868	1077	81531											
OR4N4	283694	broad.mit.edu	37	chr15	22332698	22332698	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagagcatctctttttcagGatgcctggcccagatctact	8	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22332698	T	T	22332698	1	4	74	0	1	0	0	0	0	0	0	0	11172	1189	41	3		3	OR4N4	15	22332698	5'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08		22332698	80198694	1078	81532											
CYFIP1	23191	broad.mit.edu	37	chr15	22962480	22962480	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacgatcagaatgcaagaatCagggagccacgatccacctc	9	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22962480	A	A	22962480	3	1	74	1	0	0	0	0	1	0	0	0	4170	827	29	3	2655	3	CYFIP1	15	22962480	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	629782	22962480	79568912	1079	81533											
CYFIP1	23191	broad.mit.edu	37	chr15	22990265	22990265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcacccatgccagagGgtcttctctgcctggactgt	13	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22990265	T	T	22990265	1	4	74	0	1	0	0	0	0	0	0	0	4170	1247	43	2		2	CYFIP1	15	22990265	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	27785	22990265	79541127	1080	81534											
C15orf2	23742	broad.mit.edu	37	chr15	24923002	24923002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaaagcttctctccccaGtgcctgtgttttcctgagcc	9	14	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24923002	T	T	24923002	3	4	74	1	0	0	0	0	1	0	0	0	1797	1029	36	3	1990	3	C15orf2	15	24923002	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1932737	24923002	77608390	1081	81535											
C15orf2	23742	broad.mit.edu	37	chr15	24923440	24923440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctccactttagtgagcaGtgcctctgcagcatcgttat	8	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24923440	T	T	24923440	3	4	74	1	0	0	0	0	1	0	0	0	1797	1029	36	3	2428	3	C15orf2	15	24923440	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	438	24923440	77607952	1082	81536											
SNRPN	6638	broad.mit.edu	37	chr15	25154133	25154134	+	Intron	DNP	CC	AT	AT													cttgcattcttttgagctacCcaatccttcttctgagcaag							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	25154134	AT	AT	25154133	1	1	74	0	1	0	0	0	0	0	0	0	14984	638	22	2		2	SNRPN	15	25154133	Intron	DNP	CC	TCGA-17-Z045-01A-01W-0746-08	230693	25154133	77377259	1083	81537											
ATP10A	57194	broad.mit.edu	37	chr15	25981322	25981322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtagacattagagaaatcCgggctcaggctgcgccgttc	12	11	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25981322	A	A	25981322	1	1	74	0	1	0	0	0	0	0	0	0	1120	667	23	1		1	ATP10A	15	25981322	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	827189	25981322	76550070	1084	81538											
GABRB3	2562	broad.mit.edu	37	chr15	26825645	26825645	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacagcaaacatcaccatttCgtataaatgcacggctaaat	6	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26825645	A	A	26825645	1	1	74	0	1	0	0	0	0	0	0	0	6228	899	31	3		3	GABRB3	15	26825645	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	844323	26825645	75705747	1085	81539											
GABRG3	2567	broad.mit.edu	37	chr15	27725722	27725722	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactcctgtaattcattgatCagaattataattttcacttt	3	7	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27725722	A	A	27725722	1	1	74	0	1	0	0	0	0	0	0	0	6233	841	29	3		3	GABRG3	15	27725722	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	900077	27725722	74805670	1086	81540											
OTUD7A	161725	broad.mit.edu	37	chr15	31862380	31862380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagtcgctcagagcggCtgtcaggtcccagtttttgc	11	12	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31862380	A	A	31862380	3	1	74	1	0	0	0	0	1	0	0	0	11412	797	28	3	2648	3	OTUD7A	15	31862380	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4136658	31862380	70669012	1087	81541											
RYR3	6263	broad.mit.edu	37	chr15	33855184	33855184	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcacaagacgccaaaacTtcccgcctgggacctctaaa	7	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33855184	G	G	33855184	2	3	74	1	0	0	0	0	0	0	0	1	13881	1596	56	5		5	RYR3	15	33855184	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1992804	33855184	68676208	1088	81542											
SLC12A6	9990	broad.mit.edu	37	chr15	34536219	34536219	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagttgggtgttcgaagTaatgtttgcaaggcacatgc	12	8	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34536219	A	A	34536219	3	1	74	1	0	0	0	0	1	0	0	0	14500	1635	57	5	1498	5	SLC12A6	15	34536219	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	681035	34536219	67995173	1089	81543											
LPCAT4	254531	broad.mit.edu	37	chr15	34654892	34654892	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacaattcttatcagaaccTcaaagtgaggtatgaccact	6	10	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34654892	A	A	34654892	1	1	74	0	1	0	0	0	0	0	0	0	9000	1566	54	5		5	LPCAT4	15	34654892	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	118673	34654892	67876500	1090	81544											
AQR	9716	broad.mit.edu	37	chr15	35198859	35198859	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccggtcaaacttagtgccaTaaggttttgtgggacgtacg	12	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35198859	A	A	35198859	3	1	74	1	0	0	0	0	1	0	0	0	837	1406	49	5	2811	5	AQR	15	35198859	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	543967	35198859	67332533	1091	81545											
TMCO5A	145942	broad.mit.edu	37	chr15	38229028	38229028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcatgggtcctcatggCatgtgcttgtgttgtccagg	13	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38229028	A	A	38229028	1	1	74	0	1	0	0	0	0	0	0	0	16122	725	25	3		3	TMCO5A	15	38229028	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3030169	38229028	64302364	1092	81546											
BUB1B	701	broad.mit.edu	37	chr15	40494740	40494740	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttataagtgaggataaattaGgggttactgttatgaaaaaa	10	1	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40494740	A	A	40494740	1	1	74	0	1	0	0	0	0	0	0	0	1581	1015	35	4		4	BUB1B	15	40494740	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2265712	40494740	62036652	1093	81547											
TYRO3	7301	broad.mit.edu	37	chr15	41864736	41864736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcatgccttcctgctcGcctcccggattggggagaac	11	15	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41864736	T	T	41864736	3	4	74	1	0	0	0	0	1	0	0	0	16940	1087	38	3	1907	3	TYRO3	15	41864736	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1369996	41864736	60666656	1094	81548											
SPTBN5	51332	broad.mit.edu	37	chr15	42169374	42169374	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtggcagtgaaaccatcCacttctcggccaaacttctg	9	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42169374	A	A	42169374	2	1	74	1	0	0	0	0	0	0	0	1	15240	581	21	2		2	SPTBN5	15	42169374	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	304638	42169374	60362018	1095	81549											
ZFP106	64397	broad.mit.edu	37	chr15	42713058	42713058	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttatttcatatatttctgTactgttgttttctaagcatg	5	5	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42713058	A	A	42713058	1	1	74	0	1	0	0	0	0	0	0	0	17763	1653	57	5		5	ZFP106	15	42713058	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	543684	42713058	59818334	1096	81550											
CDAN1	146059	broad.mit.edu	37	chr15	43019893	43019893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcagcccctccgctcccCccgggcagcaggttcaggac	13	18	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43019893	A	A	43019893	3	1	74	1	0	0	0	0	1	0	0	0	3084	623	22	2	685	2	CDAN1	15	43019893	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	306835	43019893	59511499	1097	81551											
UBR1	197131	broad.mit.edu	37	chr15	43367119	43367119	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacacataacatttattctTatctaatctcagcaaactta	1	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43367119	G	G	43367119	1	3	74	0	1	0	0	0	0	0	0	0	17027	1769	61	5		5	UBR1	15	43367119	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	347226	43367119	59164273	1098	81552											
EPB42	2038	broad.mit.edu	37	chr15	43507765	43507765	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatagtaacttcttcatggtCcatgggaggactgaatgaaa	10	6	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43507765	T	T	43507765	1	4	74	0	1	0	0	0	0	0	0	0	5200	870	30	4		4	EPB42	15	43507765	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	140646	43507765	59023627	1099	81553											
TGM5	9333	broad.mit.edu	37	chr15	43525419	43525419	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtctacataaacattcctGtaacccttaatgtccttaaa	3	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43525419	T	T	43525419	4	4	74	1	0	0	0	0	0	1	0	0	15956	1372	48	3	33	3	TGM5	15	43525419	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	17654	43525419	59005973	1100	81554											
B2M	567	broad.mit.edu	37	chr15	45007672	45007672	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagcagagaatggaaagtCaaatttcctgaattgctatg	9	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45007672	G	G	45007672	4	3	74	1	0	0	0	0	0	1	0	0	1249	838	29	4	125	4	B2M	15	45007672	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1482253	45007672	57523720	1101	81555											
SLC12A1	6557	broad.mit.edu	37	chr15	48513161	48513161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtcatgctcttcattcGcctctcctggattgttggag	12	10	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48513161	T	T	48513161	3	4	74	1	0	0	0	0	1	0	0	0	14495	1087	38	3	606	3	SLC12A1	15	48513161	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3505489	48513161	54018231	1102	81556											
SLC12A1	6557	broad.mit.edu	37	chr15	48519296	48519296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttggagtcatcatcattGgcctaagtgtggtagtaacg	12	7	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48519296	T	T	48519296	1	4	74	0	1	0	0	0	0	0	0	0	14495	1348	47	2		2	SLC12A1	15	48519296	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6135	48519296	54012096	1103	81557											
MYO5C	55930	broad.mit.edu	37	chr15	52524934	52524934	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccaaatcaatgccttgaTtgtttcatgttatgtttaag	7	7	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52524934	A	A	52524934	1	1	74	0	1	0	0	0	0	0	0	0	10174	1508	52	5		5	MYO5C	15	52524934	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4005638	52524934	50006458	1104	81558											
UNC13C	440279	broad.mit.edu	37	chr15	54527319	54527319	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatgtggtaagttacaacTgtttaattctcttcgattgc	9	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54527319	A	A	54527319	1	1	74	0	1	0	0	0	0	0	0	0	17112	1595	55	5		5	UNC13C	15	54527319	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2002385	54527319	48004073	1105	81559											
DYX1C1	161582	broad.mit.edu	37	chr15	55710312	55710312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggcctgacattcaatgCcctcaagagaacagaattcc	8	12	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55710312	A	A	55710312	3	1	74	1	0	0	0	0	1	0	0	0	4902	739	26	3	82	3	DYX1C1	15	55710312	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1182993	55710312	46821080	1106	81560											
ALDH1A2	8854	broad.mit.edu	37	chr15	58272817	58272817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgacagcccatactagaCgcctttgttgaactgcgtgg	12	11	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58272817	A	A	58272817	1	1	74	0	1	0	0	0	0	0	0	0	491	551	19	3		3	ALDH1A2	15	58272817	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2562505	58272817	44258575	1107	81561											
VPS13C	54832	broad.mit.edu	37	chr15	62241556	62241556	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaatgtcaacatgctaAatattcatcttaactgaaaa	5	8	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62241556	C	C	62241556	1	2	74	0	1	0	0	0	0	0	0	0	17318	29	1	5		5	VPS13C	15	62241556	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3968739	62241556	40289836	1108	81562											
IGDCC4	57722	broad.mit.edu	37	chr15	65676610	65676610	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacacccgagatgagatcagGagcctctggaggcagggggt	16	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65676610	T	T	65676610	3	4	74	1	0	0	0	0	1	0	0	0	7639	1174	41	3	266	3	IGDCC4	15	65676610	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3435054	65676610	36854782	1109	81563											
THSD4	79875	broad.mit.edu	37	chr15	71828619	71828620	+	Intron	DNP	CC	AA	AA													tttccagcttctggaggctgCcacattccttggttcccagg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	71828620	AA	AA	71828619	1	1	74	0	1	0	0	0	0	0	0	0	16001	754	26	3		3	THSD4	15	71828619	Intron	DNP	CC	TCGA-17-Z045-01A-01W-0746-08	6152009	71828619	30702773	1110	81564											
NEO1	4756	broad.mit.edu	37	chr15	73562350	73562350	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaattattttctgctcaGacacttctgaagttgattta	5	6	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73562350	T	T	73562350	5	4	74	1	0	0	0	0	0	0	1	0	10431	956	33	3	2560	3	NEO1	15	73562350	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1733731	73562350	28969042	1111	81565											
STRA6	64220	broad.mit.edu	37	chr15	74473482	74473482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcacgtgctgcagggcCacaggaggcacagcgcaggg	16	13	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74473482	A	A	74473482	1	1	74	0	1	0	0	0	0	0	0	0	15440	609	21	2		2	STRA6	15	74473482	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	911132	74473482	28057910	1112	81566											
CCDC33	80125	broad.mit.edu	37	chr15	74574130	74574130	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctccccaggacaccagcctGaaaactatcaatgatgaggc	8	14	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74574130	C	C	74574130	2	2	74	1	0	0	0	0	0	0	0	1	2833	1277	45	4		4	CCDC33	15	74574130	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	100648	74574130	27957262	1113	81567											
CCDC33	80125	broad.mit.edu	37	chr15	74623621	74623621	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctctgaacaggcagcaGggaaagccctacacgggtgg	13	13	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74623621	T	T	74623621	3	4	74	1	0	0	0	0	1	0	0	0	2833	991	35	2	1886	2	CCDC33	15	74623621	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	49491	74623621	27907771	1114	81568											
CYP11A1	1583	broad.mit.edu	37	chr15	74637206	74637206	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggggtctcactctgttGcccagggtggtcttaaattg	13	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74637206	C	C	74637206	1	2	74	0	1	0	0	0	0	0	0	0	4177	1334	46	4		4	CYP11A1	15	74637206	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	13585	74637206	27894186	1115	81569											
SCAPER	49855	broad.mit.edu	37	chr15	76641023	76641023	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgagcttcttcccaggccTgctgaggaaatctgttagcc	11	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76641023	A	A	76641023	3	1	74	1	0	0	0	0	1	0	0	0	13990	1580	55	5	52	5	SCAPER	15	76641023	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2003817	76641023	25890369	1116	81570											
CIB2	10518	broad.mit.edu	37	chr15	78416082	78416082	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattgaagaaggtgcagtcCtgttgagggaaaacacacaa	11	6	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78416082	A	A	78416082	5	1	74	1	0	0	0	0	0	0	1	0	3452	695	24	2	532	2	CIB2	15	78416082	Splice_Site	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1775059	78416082	24115310	1117	81571											
IDH3A	3419	broad.mit.edu	37	chr15	78450058	78450058	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgaacttttaggatgcAttgtacccatttctatgaaa	7	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78450058	G	G	78450058	1	3	74	0	1	0	0	0	0	0	0	0	7566	232	8	5		5	IDH3A	15	78450058	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	33976	78450058	24081334	1118	81572											
AP3B2	8120	broad.mit.edu	37	chr15	83330526	83330526	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatccaagctggacattcTggagtcagcttctatacttc	7	12	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83330526	A	A	83330526	1	1	74	0	1	0	0	0	0	0	0	0	747	1595	55	5		5	AP3B2	15	83330526	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4880468	83330526	19200866	1119	81573											
SLC28A1	9154	broad.mit.edu	37	chr15	85448917	85448917	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctggctgcccagagcatcTtagattactgggagtagggg	15	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85448917	A	A	85448917	1	1	74	0	1	0	0	0	0	0	0	0	14645	1624	56	5		5	SLC28A1	15	85448917	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2118391	85448917	17082475	1120	81574											
SLC28A1	9154	broad.mit.edu	37	chr15	85488009	85488009	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctctacatgcccaggggGgctgaagttgactgcatgtc	12	11	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85488009	T	T	85488009	2	4	74	1	0	0	0	0	0	0	0	1	14645	1219	43	2		2	SLC28A1	15	85488009	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	39092	85488009	17043383	1121	81575											
AGBL1	123624	broad.mit.edu	37	chr15	86697741	86697741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaagaacctatcccatGgccagaatctcctccactgt	7	15	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86697741	T	T	86697741	3	4	74	1	0	0	0	0	1	0	0	0	375	1348	47	2	211	2	AGBL1	15	86697741	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1209732	86697741	15833651	1122	81576											
ACAN	176	broad.mit.edu	37	chr15	89391316	89391316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctagatgggcagggggtGggcagggagctgacagggcg	22	8	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89391316	T	T	89391316	1	4	74	0	1	0	0	0	0	0	0	0	117	1363	47	2		2	ACAN	15	89391316	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2693575	89391316	13140076	1123	81577											
RLBP1	6017	broad.mit.edu	37	chr15	89760499	89760499	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcctgcaccatctcctgCagctctcgcactgcctcctc	7	20	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89760499	A	A	89760499	2	1	74	1	0	0	0	0	0	0	0	1	13499	697	25	3		3	RLBP1	15	89760499	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	369183	89760499	12770893	1124	81578											
MCTP2	55784	broad.mit.edu	37	chr15	94986025	94986025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttattgtttaagaggttGtaatgcatttcaaaaatata	8	2	1	1	rs75281537	byFrequency;by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94986025	T	T	94986025	1	4	74	0	1	0	0	0	0	0	0	0	9494	1392	48	3		3	MCTP2	15	94986025	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5225526	94986025	7545367	1125	81579											
ADAMTS17	170691	broad.mit.edu	37	chr15	100692991	100692991	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacagccgagaggcaagttGacttgcaaatgtactgccta	10	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100692991	A	A	100692991	1	1	74	0	1	0	0	0	0	0	0	0	262	1305	45	4		4	ADAMTS17	15	100692991	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5706966	100692991	1838401	1126	81580											
ADAMTS17	170691	broad.mit.edu	37	chr15	100821326	100821326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgttcccgtatccccaaCccagcgtcttcctcacttga	5	17	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100821326	A	A	100821326	1	1	74	0	1	0	0	0	0	0	0	0	262	522	18	3		3	ADAMTS17	15	100821326	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	128335	100821326	1710066	1127	81581											
TARSL2	123283	broad.mit.edu	37	chr15	102242441	102242441	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattaagatgtggggcataCcttcccgatcttcctgtgat	10	9	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102242441	A	A	102242441	5	1	74	1	0	0	0	0	0	0	1	0	15680	521	18	3	1230	3	TARSL2	15	102242441	Splice_Site	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1421115	102242441	288951	1128	81582											
TARSL2	123283	broad.mit.edu	37	chr15	102252198	102252198	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgagcactggagtgccAgtacacctgcatggcatgga	13	9	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102252198	G	G	102252198	3	3	74	1	0	0	0	0	1	0	0	0	15680	188	7	5	1771	5	TARSL2	15	102252198	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	9757	102252198	279194	1129	81583											
PRSS21	10942	broad.mit.edu	37	chr16	2868654	2868654	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccctccatccagggcccctGactgctctcttctcttctgc	7	19	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2868654	T	T	2868654	1	4	74	0	1	0	0	0	0	0	0	0	12724	1305	45	3		3	PRSS21	16	2868654	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08		2868654	87486099	1130	81584											
ZNF597	146434	broad.mit.edu	37	chr16	3487213	3487213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgatcgctgaagttttgGtcacactcaggacatttgta	10	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3487213	T	T	3487213	3	4	74	1	0	0	0	0	1	0	0	0	18154	1252	44	3	792	3	ZNF597	16	3487213	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	618559	3487213	86867540	1131	81585											
SEPT12	124404	broad.mit.edu	37	chr16	4836082	4836082	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacagcgtgttcaccatcGtggacttgcccagcccgctt	10	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4836082	A	A	4836082	3	1	74	1	0	0	0	0	1	0	0	0	14175	1145	40	4	917	4	SEPT12	16	4836082	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1348869	4836082	85518671	1132	81586											
A2BP1	54715	broad.mit.edu	37	chr16	7760748	7760748	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accgttttgctccatactaaAtgacaaaaccataaaaacct	3	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7760748	T	T	7760748	1	4	74	0	1	0	0	0	0	0	0	0	3	116	4	5		5	A2BP1	16	7760748	3'UTR	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2924666	7760748	82594005	1133	81587											
GPRC5B	51704	broad.mit.edu	37	chr16	19883864	19883864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaagaggcccagggtccCcaggaggaacagaaagtgga	14	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19883864	A	A	19883864	3	1	74	1	0	0	0	0	1	0	0	0	6791	623	22	2	919	2	GPRC5B	16	19883864	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	12123116	19883864	70470889	1134	81588											
DNAH3	55567	broad.mit.edu	37	chr16	20996653	20996653	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgatcttcttaagatcttCtcgccagtcattgcctgcgt	7	11	5	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20996653	G	G	20996653	3	3	74	1	0	0	0	0	1	0	0	0	4643	922	32	4	4998	4	DNAH3	16	20996653	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1112789	20996653	69358100	1135	81589											
ANKS4B	257629	broad.mit.edu	37	chr16	21261268	21261268	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccactgcacagaacatcatGaaccccaagaaggtcaccag	8	14	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21261268	C	C	21261268	3	2	74	1	0	0	0	0	1	0	0	0	691	1290	45	4	387	4	ANKS4B	16	21261268	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	264615	21261268	69093485	1136	81590											
ARHGAP17	55114	broad.mit.edu	37	chr16	24953396	24953396	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagtcagagtcgtttccagTgtggaatgagtgattagaac	13	6	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24953396	A	A	24953396	3	1	74	1	0	0	0	0	1	0	0	0	869	1696	59	5	1263	5	ARHGAP17	16	24953396	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3692128	24953396	65401357	1137	81591											
ARHGAP17	55114	broad.mit.edu	37	chr16	24975516	24975516	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttatcaaggaattctcatAccttgcactgttctacttta	4	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24975516	G	G	24975516	5	3	74	1	0	0	0	0	0	0	1	0	869	405	14	5	2126	5	ARHGAP17	16	24975516	Splice_Site	SNP	A	TCGA-17-Z045-01A-01W-0746-08	22120	24975516	65379237	1138	81592											
HS3ST4	9951	broad.mit.edu	37	chr16	26139401	26139401	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcatcctttgctcctcctCttcctcctttcctcttctct	1	18	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26139401	T	T	26139401	1	4	74	0	1	0	0	0	0	0	0	0	7434	928	32	4		4	HS3ST4	16	26139401	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1163885	26139401	64215352	1139	81593											
IL21R	50615	broad.mit.edu	37	chr16	27457475	27457475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggagccccacctcccCtcaccccaggctccccagcc	6	24	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27457475	A	A	27457475	1	1	74	0	1	0	0	0	0	0	0	0	7741	696	24	2		2	IL21R	16	27457475	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1318074	27457475	62897278	1140	81594											
CLN3	1201	broad.mit.edu	37	chr16	28499874	28499874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctatagacccaggggcCctgggtcaggcaaggaccag	16	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28499874	A	A	28499874	1	1	74	0	1	0	0	0	0	0	0	0	3575	638	22	2		2	CLN3	16	28499874	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1042399	28499874	61854879	1141	81595											
PHKB	5257	broad.mit.edu	37	chr16	47675021	47675021	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgaaatccaagtgggtGgtgtgtttttttgtggggag	17	2	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47675021	C	C	47675021	1	2	74	0	1	0	0	0	0	0	0	0	11940	1363	47	4		4	PHKB	16	47675021	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	19175147	47675021	42679732	1142	81596											
ABCC11	85320	broad.mit.edu	37	chr16	48201239	48201239	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcgaacaatgacccaggCttcttccgcagtacctccgg	10	15	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48201239	T	T	48201239	2	4	74	1	0	0	0	0	0	0	0	1	51	796	28	4		4	ABCC11	16	48201239	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	526218	48201239	42153514	1143	81597											
GNAO1	2775	broad.mit.edu	37	chr16	56374915	56374915	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacaggtagagacccctccaGggacagcaggcccccgaggg	14	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56374915	C	C	56374915	1	2	74	0	1	0	0	0	0	0	0	0	6572	1015	35	4		4	GNAO1	16	56374915	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8173676	56374915	33979838	1144	81598											
SETD6	79918	broad.mit.edu	37	chr16	58552873	58552873	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggagggaacagcaagcCttacaggttcgctatggtca	13	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58552873	A	A	58552873	2	1	74	1	0	0	0	0	0	0	0	1	14248	668	24	2		2	SETD6	16	58552873	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2177958	58552873	31801880	1145	81599											
CDH8	1006	broad.mit.edu	37	chr16	61687545	61687545	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcactttcaccaacagagtaGagttcgcccagtctcttaaa	6	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61687545	C	C	61687545	2	2	74	1	0	0	0	0	0	0	0	1	3146	929	33	4		4	CDH8	16	61687545	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3134672	61687545	28667208	1146	81600											
LRRC29	26231	broad.mit.edu	37	chr16	67246943	67246943	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtgtggagaggccagccTggcttctaccacagaaaagt	13	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67246943	A	A	67246943	1	1	74	0	1	0	0	0	0	0	0	0	9070	1595	55	5		5	LRRC29	16	67246943	5'Flank	SNP	T	TCGA-17-Z045-01A-01W-0746-08	5559398	67246943	23107810	1147	81601											
ATP6V0D1	9114	broad.mit.edu	37	chr16	67487552	67487552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatcgatgactgacaccGtcagaggtgatgcctcgttg	13	10	2	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67487552	T	T	67487552	3	4	74	1	0	0	0	0	1	0	0	0	1177	1145	40	3	886	3	ATP6V0D1	16	67487552	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	240609	67487552	22867201	1148	81602											
EDC4	23644	broad.mit.edu	37	chr16	67914657	67914657	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaccagagggccttgaGccagacagtatggcttcagc	12	12	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67914657	A	A	67914657	2	1	74	1	0	0	0	0	0	0	0	1	4948	962	34	4		4	EDC4	16	67914657	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	427105	67914657	22440096	1149	81603											
ZNF23	7571	broad.mit.edu	37	chr16	71483710	71483710	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctgtttcctgggaaaagTctctttgaagttcaaatgat	9	6	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71483710	C	C	71483710	3	2	74	1	0	0	0	0	1	0	0	0	17909	1667	58	5	1717	5	ZNF23	16	71483710	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3569053	71483710	18871043	1150	81604											
ZFHX3	463	broad.mit.edu	37	chr16	72926835	72926835	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttacaatcctggggagaaGgaaggcagaagtgaagggag	18	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72926835	A	A	72926835	1	1	74	0	1	0	0	0	0	0	0	0	17760	1015	35	4		4	ZFHX3	16	72926835	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1443125	72926835	17427918	1151	81605											
WDR59	79726	broad.mit.edu	37	chr16	74927627	74927627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggaggcaagcaatatcCtggatgatgactttcccagc	12	10	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74927627	A	A	74927627	3	1	74	1	0	0	0	0	1	0	0	0	17435	680	24	2	1006	2	WDR59	16	74927627	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2000792	74927627	15427126	1152	81606											
MBTPS1	8720	broad.mit.edu	37	chr16	84118534	84118534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcctgctctgctggcacCgagtgctcctgtcctgacgt	11	15	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84118534	A	A	84118534	1	1	74	0	1	0	0	0	0	0	0	0	9454	667	23	1		1	MBTPS1	16	84118534	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	9190907	84118534	6236219	1153	81607											
SPNS2	124976	broad.mit.edu	37	chr17	4434436	4434436	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagccctacgtcccttcccAtgaggacaccctccggtcca	7	18	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4434436	G	G	4434436	1	3	74	0	1	0	0	0	0	0	0	0	15193	232	8	5		5	SPNS2	17	4434436	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08		4434436	76760774	1154	81608											
NLRP1	22861	broad.mit.edu	37	chr17	5481286	5481286	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataataccacacatctacaAccatctgatctttgacaaac	2	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5481286	G	G	5481286	1	3	74	0	1	0	0	0	0	0	0	0	10566	58	2	5		5	NLRP1	17	5481286	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1046850	5481286	75713924	1155	81609											
TEKT1	83659	broad.mit.edu	37	chr17	6716111	6716111	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttccatggtgaaagctcctGaatctgctcttcttccatgc	7	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6716111	T	T	6716111	1	4	74	0	1	0	0	0	0	0	0	0	15874	1305	45	3		3	TEKT1	17	6716111	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1234825	6716111	74479099	1156	81610											
TMEM95	339168	broad.mit.edu	37	chr17	7258984	7258984	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggtcaaggggaaagagtgAcctaggggcttgggaggata	19	4	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7258984	T	T	7258984	1	4	74	0	1	0	0	0	0	0	0	0	16346	290	10	5		5	TMEM95	17	7258984	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	542873	7258984	73936226	1157	81611											
TP53	7157	broad.mit.edu	37	chr17	7577570	7577570	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatgcaggaactgttacaCatgtagttgtagtggatggt	12	7	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577570	T	T	7577570	3	4	74	1	0	0	0	0	1	0	0	0	16505	478	17	4	579	4	TP53	17	7577570	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	318586	7577570	73617640	1158	81612											
KCNAB3	9196	broad.mit.edu	37	chr17	7828323	7828323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcctgccttggcctccCaacgtcctgggattacagga	9	15	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7828323	A	A	7828323	1	1	74	0	1	0	0	0	0	0	0	0	8081	609	21	2		2	KCNAB3	17	7828323	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	250753	7828323	73366887	1159	81613											
MFSD6L	162387	broad.mit.edu	37	chr17	8701314	8701314	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgatggctcctaccaaaacAgtggtggaggcgaggagaat	14	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8701314	G	G	8701314	2	3	74	1	0	0	0	0	0	0	0	1	9629	175	7	5		5	MFSD6L	17	8701314	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	872991	8701314	72493896	1160	81614											
PIK3R5	23533	broad.mit.edu	37	chr17	8791675	8791675	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgggctggggcagggagcGggagcgctgggcccgggaag	23	8	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8791675	A	A	8791675	3	1	74	1	0	0	0	0	1	0	0	0	12017	1116	39	4	1253	4	PIK3R5	17	8791675	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	90361	8791675	72403535	1161	81615											
WDR16	146845	broad.mit.edu	37	chr17	9511513	9511513	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactgctggtcttctgtaaAagccctggctacaaacccat	9	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9511513	C	C	9511513	3	2	74	1	0	0	0	0	1	0	0	0	17403	11	1	5	857	5	WDR16	17	9511513	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	719838	9511513	71683697	1162	81616											
MYH8	4626	broad.mit.edu	37	chr17	10304107	10304107	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatgcgggcctgggaatgaAagaagcacataaacataaac	10	8	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10304107	T	T	10304107	1	4	74	0	1	0	0	0	0	0	0	0	10135	29	1	5		5	MYH8	17	10304107	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	792594	10304107	70891103	1163	81617											
MYH1	4619	broad.mit.edu	37	chr17	10406525	10406525	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggattttggttttgattagcTggtcacacctttcctctgca	9	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10406525	A	A	10406525	3	1	74	1	0	0	0	0	1	0	0	0	10123	1580	55	5	3159	5	MYH1	17	10406525	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	102418	10406525	70788685	1164	81618											
DNAH9	1770	broad.mit.edu	37	chr17	11660891	11660891	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcaacccggcagacttgGgatggaaccctccagtgagc	11	13	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11660891	T	T	11660891	4	4	74	1	0	0	0	0	0	1	0	0	4648	1233	43	2	7015	2	DNAH9	17	11660891	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1254366	11660891	69534319	1165	81619											
DNAH9	1770	broad.mit.edu	37	chr17	11711311	11711311	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagttcccctgtctggagcCtccccttcaatgtctgtcca	7	17	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11711311	T	T	11711311	1	4	74	0	1	0	0	0	0	0	0	0	4648	696	24	4		4	DNAH9	17	11711311	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	50420	11711311	69483899	1166	81620											
DNAH9	1770	broad.mit.edu	37	chr17	11840566	11840566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagcagtgtcccctggaGgagggatactagcccatgga	16	9	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11840566	T	T	11840566	1	4	74	0	1	0	0	0	0	0	0	0	4648	1015	35	2		2	DNAH9	17	11840566	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	129255	11840566	69354644	1167	81621											
TRPV2	51393	broad.mit.edu	37	chr17	16319588	16319588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgggtccccagggcctgGtcccagcctaccctctccac	9	21	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16319588	T	T	16319588	1	4	74	0	1	0	0	0	0	0	0	0	16721	1276	44	3		3	TRPV2	17	16319588	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4479022	16319588	64875622	1168	81622											
SARM1	23098	broad.mit.edu	37	chr17	26711501	26711501	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggaggtgccacggcccatCctgccctccgtgcccagctg	13	17	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26711501	A	A	26711501	2	1	74	1	0	0	0	0	0	0	0	1	13954	845	30	3		3	SARM1	17	26711501	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	10391913	26711501	54483709	1169	81623											
PIGS	94005	broad.mit.edu	37	chr17	26890566	26890566	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagaacaggtggtacacCaagagcaaaacaccattcca	9	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26890566	G	G	26890566	1	3	74	0	1	0	0	0	0	0	0	0	11993	609	21	4		4	PIGS	17	26890566	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	179065	26890566	54304644	1170	81624											
C17orf63	55731	broad.mit.edu	37	chr17	27085287	27085287	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggagggcagcagggctaCctatctataccctgggtgct	14	11	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27085287	T	T	27085287	1	4	74	0	1	0	0	0	0	0	0	0	1887	522	18	4		4	C17orf63	17	27085287	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	194721	27085287	54109923	1171	81625											
CORO6	84940	broad.mit.edu	37	chr17	27948194	27948194	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctcaggagttcccaggGgccccagctagtgtcctccc	12	15	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27948194	T	T	27948194	1	4	74	0	1	0	0	0	0	0	0	0	3790	1247	43	2		2	CORO6	17	27948194	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	862907	27948194	53247016	1172	81626											
ACCN1	40	broad.mit.edu	37	chr17	31591526	31591526	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaatgaaatgcaagctgcCtaactcctttcctgtgatca	9	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31591526	G	G	31591526	1	3	74	0	1	0	0	0	0	0	0	0	128	696	24	4		4	ACCN1	17	31591526	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3643332	31591526	49603684	1173	81627											
ACCN1	40	broad.mit.edu	37	chr17	31594258	31594258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgcaccccttaccccccCcaggaagcaaggagtgttgg	10	15	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31594258	A	A	31594258	1	1	74	0	1	0	0	0	0	0	0	0	128	638	22	2		2	ACCN1	17	31594258	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2732	31594258	49600952	1174	81628											
ACCN1	40	broad.mit.edu	37	chr17	31674073	31674073	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatttggaaagacctttgcaCaccaaaggaaatgatgctag	10	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31674073	T	T	31674073	1	4	74	0	1	0	0	0	0	0	0	0	128	493	17	4		4	ACCN1	17	31674073	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	79815	31674073	49521137	1175	81629											
CCL3	6348	broad.mit.edu	37	chr17	34416714	34416714	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaggcagcttctgatccccGagcagttgaggaaggcaggc	14	12	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34416714	T	T	34416714	1	4	74	0	1	0	0	0	0	0	0	0	2929	1073	37	3		3	CCL3	17	34416714	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2742641	34416714	46778496	1176	81630											
MYO19	80179	broad.mit.edu	37	chr17	34863706	34863706	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcattggcgtagttgatgCacaactgttccagactgttg	10	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34863706	G	G	34863706	3	3	74	1	0	0	0	0	1	0	0	0	10161	710	25	4	1671	4	MYO19	17	34863706	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	446992	34863706	46331504	1177	81631											
ACACA	31	broad.mit.edu	37	chr17	35497777	35497777	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatactggccatcatcagcAgcttcttgggcaccagggcc	10	14	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35497777	C	C	35497777	1	2	74	0	1	0	0	0	0	0	0	0	106	203	7	5		5	ACACA	17	35497777	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	634071	35497777	45697433	1178	81632											
ACACA	31	broad.mit.edu	37	chr17	35562845	35562845	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccaatacagatgcagatAgaagttataatatttggtag	10	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35562845	G	G	35562845	1	3	74	0	1	0	0	0	0	0	0	0	106	435	15	5		5	ACACA	17	35562845	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	65068	35562845	45632365	1179	81633											
KRT40	125115	broad.mit.edu	37	chr17	39140293	39140293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccccatcctcacaccagGcacagttccccaccaagcag	5	20	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39140293	T	T	39140293	3	4	74	1	0	0	0	0	1	0	0	0	8549	1203	42	3	1090	3	KRT40	17	39140293	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3577448	39140293	42054917	1180	81634											
KRT36	8689	broad.mit.edu	37	chr17	39644469	39644469	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagctggatgggaaacactGggaagtcacatggcaccagc	13	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39644469	A	A	39644469	1	1	74	0	1	0	0	0	0	0	0	0	8544	1363	47	4		4	KRT36	17	39644469	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	504176	39644469	41550741	1181	81635											
KRT15	3866	broad.mit.edu	37	chr17	39672374	39672374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgctgaagaaccaggcCtcgacatcccggcggttctt	10	14	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39672374	A	A	39672374	3	1	74	1	0	0	0	0	1	0	0	0	8523	680	24	2	508	2	KRT15	17	39672374	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	27905	39672374	41522836	1182	81636											
RAB5C	5878	broad.mit.edu	37	chr17	40278778	40278778	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagcaactgacctattGccatgaagatttcgttcacg	10	9	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40278778	A	A	40278778	3	1	74	1	0	0	0	0	1	0	0	0	13058	1319	46	4	128	4	RAB5C	17	40278778	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	606404	40278778	40916432	1183	81637											
CRHR1	1394	broad.mit.edu	37	chr17	43907332	43907332	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacctccctgtgtgactTggccagtcagccccaccctg	9	17	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43907332	A	A	43907332	1	1	74	0	1	0	0	0	0	0	0	0	3903	1827	63	5		5	CRHR1	17	43907332	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3628554	43907332	37287878	1184	81638											
KIAA1267	284058	broad.mit.edu	37	chr17	44127970	44127970	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccaacagaggggcttcaTagtgaatttcgggaggcatg	14	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44127970	A	A	44127970	3	1	74	1	0	0	0	0	1	0	0	0	8289	1406	49	5	1404	5	KIAA1267	17	44127970	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	220638	44127970	37067240	1185	81639											
TBX21	30009	broad.mit.edu	37	chr17	45821856	45821856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctctctagattactcaGctgaaaattgataataaccc	4	11	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45821856	T	T	45821856	3	4	74	1	0	0	0	0	1	0	0	0	15779	962	34	3	954	3	TBX21	17	45821856	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1693886	45821856	35373354	1186	81640											
B4GALNT2	124872	broad.mit.edu	37	chr17	47233984	47233985	+	Intron	DNP	CC	AA	AA													aggtgagtccttctcccagcCcctctttgcacttggtgtcc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47233985	AA	AA	47233984	1	1	74	0	1	0	0	0	0	0	0	0	1272	638	22	2		2	B4GALNT2	17	47233984	Intron	DNP	CC	TCGA-17-Z045-01A-01W-0746-08	1412128	47233984	33961226	1187	81641											
COL1A1	1277	broad.mit.edu	37	chr17	48277195	48277195	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggtctcgtcacagatcaCgtcatcgcacaacaccttgc	7	15	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48277195	T	T	48277195	3	4	74	1	0	0	0	0	1	0	0	0	3709	536	19	4	4377	4	COL1A1	17	48277195	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1043211	48277195	32918015	1188	81642											
CA10	56934	broad.mit.edu	37	chr17	50198071	50198071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgtgcactgggtcaatGgggtggagccaccaggaatt	14	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50198071	T	T	50198071	1	4	74	0	1	0	0	0	0	0	0	0	2537	1363	47	2		2	CA10	17	50198071	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1920876	50198071	30997139	1189	81643											
TOM1L1	10040	broad.mit.edu	37	chr17	52990025	52990025	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaattttttttctaatttAgcttattgacatgtgtgtgc	6	4	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52990025	T	T	52990025	5	4	74	1	0	0	0	0	0	0	1	0	16475	434	15	5	235	5	TOM1L1	17	52990025	Splice_Site	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2791954	52990025	28205185	1190	81644											
AKAP1	8165	broad.mit.edu	37	chr17	55189100	55189101	+	Intron	DNP	GG	TT	TT													taaaacagaagtaggtctttGggtgtccagggaattggttt					rs141893254	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55189101	TT	TT	55189100	1	4	74	0	1	0	0	0	0	0	0	0	445	1363	47	2		2	AKAP1	17	55189100	Intron	DNP	GG	TCGA-17-Z045-01A-01W-0746-08	2199075	55189100	26006110	1191	81645											
DYNLL2	140735	broad.mit.edu	37	chr17	56166675	56166675	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcagtggcggcggcagCgatggcaagcaggcggcgtt	20	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56166675	G	G	56166675	1	3	74	0	1	0	0	0	0	0	0	0	4889	783	27	4		4	DYNLL2	17	56166675	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	977575	56166675	25028535	1192	81646											
OR4D2	124538	broad.mit.edu	37	chr17	56247586	56247586	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtactgagacttgcctgcacTgacacctcactgctggagtt	10	12	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247586	A	A	56247586	2	1	74	1	0	0	0	0	0	0	0	1	11150	1567	55	5		5	OR4D2	17	56247586	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	80911	56247586	24947624	1193	81647											
EPX	8288	broad.mit.edu	37	chr17	56276245	56276245	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgttagggaggagggtggcGatgaggagcctcagcacagc	19	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56276245	T	T	56276245	1	4	74	0	1	0	0	0	0	0	0	0	5242	1073	37	3		3	EPX	17	56276245	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	28659	56276245	24918965	1194	81648											
TEX14	56155	broad.mit.edu	37	chr17	56636858	56636858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgatttccttctttctGgtgtaatgctatcttccctt	5	12	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56636858	T	T	56636858	3	4	74	1	0	0	0	0	1	0	0	0	15900	1348	47	2	144	2	TEX14	17	56636858	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	360613	56636858	24558352	1195	81649											
NACA2	342538	broad.mit.edu	37	chr17	59668401	59668401	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagccaggctttttgtgtGgtggtctgggtggaatcctg	15	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59668401	T	T	59668401	2	4	74	1	0	0	0	0	0	0	0	1	10228	1335	47	2		2	NACA2	17	59668401	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3031543	59668401	21526809	1196	81650											
MAP3K3	4215	broad.mit.edu	37	chr17	61769652	61769652	+	Frame_Shift_Del	DEL	G	-	-													atgtaaagctgggggactttGgggccagcaaacgcctgcag							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61769652	-	-	61769652	7	5	74	1	0	1	0	1	0	0	0	0	9343	1348	47	0	1680	0	MAP3K3	17	61769652	Frame_Shift_Del	DEL	G	TCGA-17-Z045-01A-01W-0746-08	2101251	61769652	19425558	1197	81651											
CACNG5	27091	broad.mit.edu	37	chr17	64876885	64876885	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttttgtttttgagacagaGtcttgctctggcacccacgc	9	10	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64876885	A	A	64876885	1	1	74	0	1	0	0	0	0	0	0	0	2586	1044	36	4		4	CACNG5	17	64876885	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3107233	64876885	16318325	1198	81652											
ABCA9	10350	broad.mit.edu	37	chr17	66987234	66987234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctattcttctacttgCaccatccgcctttcaaacac	2	17	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66987234	A	A	66987234	1	1	74	0	1	0	0	0	0	0	0	0	39	725	25	3		3	ABCA9	17	66987234	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2110349	66987234	14207976	1199	81653											
CD300C	10871	broad.mit.edu	37	chr17	72537795	72537795	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgaggtctgttcacccagAggacggcacccagcatgctc	11	14	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72537795	G	G	72537795	3	3	74	1	0	0	0	0	1	0	0	0	3027	304	11	5	70	5	CD300C	17	72537795	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5550561	72537795	8657415	1200	81654											
ENGASE	64772	broad.mit.edu	37	chr17	77077087	77077087	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtcccagggggcctggtGctctggtatgacagcgtggt	17	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77077087	A	A	77077087	2	1	74	1	0	0	0	0	0	0	0	1	5160	1306	46	4		4	ENGASE	17	77077087	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4539292	77077087	4118123	1201	81655											
RPTOR	57521	broad.mit.edu	37	chr17	78829150	78829150	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctaggtaactgaagcagcaGacagatctgaactgtggtca	11	8	3	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78829150	A	A	78829150	1	1	74	0	1	0	0	0	0	0	0	0	13776	957	33	4		4	RPTOR	17	78829150	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1752063	78829150	2366060	1202	81656											
NARF	26502	broad.mit.edu	37	chr17	80417920	80417920	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaatgtgtcagccgatgCaccgagtccagcccaggaaa	12	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80417920	T	T	80417920	3	4	74	1	0	0	0	0	1	0	0	0	10261	710	25	4	86	4	NARF	17	80417920	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1588770	80417920	777290	1203	81657											
EPB41L3	23136	broad.mit.edu	37	chr18	5419722	5419722	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctatacctttccctcgtgCcggatggccgagatgggcgt	13	12	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5419722	G	G	5419722	2	3	74	1	0	0	0	0	0	0	0	1	5196	726	26	4		4	EPB41L3	18	5419722	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08		5419722	72657526	1204	81658											
LAMA1	284217	broad.mit.edu	37	chr18	6959305	6959305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctctgagctcaccacaCcttcattacacactgcctgg	5	17	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6959305	A	A	6959305	1	1	74	0	1	0	0	0	0	0	0	0	8677	522	18	3		3	LAMA1	18	6959305	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1539583	6959305	71117943	1205	81659											
LAMA1	284217	broad.mit.edu	37	chr18	7013968	7013968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgatcgcaggcccggccaCcaaattttgacttgcactgg	10	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7013968	A	A	7013968	3	1	74	1	0	0	0	0	1	0	0	0	8677	507	18	3	6182	3	LAMA1	18	7013968	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	54663	7013968	71063280	1206	81660											
PTPRM	5797	broad.mit.edu	37	chr18	7653465	7653465	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatcctctccctcctccCaccctctgccctctttccca	2	24	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7653465	T	T	7653465	1	4	74	0	1	0	0	0	0	0	0	0	12914	609	21	4		4	PTPRM	18	7653465	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	639497	7653465	70423783	1207	81661											
TWSG1	57045	broad.mit.edu	37	chr18	9360051	9360051	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtcttggggccctttgggacGagtgctgtgactgtgttggt	17	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9360051	C	C	9360051	3	2	74	1	0	0	0	0	1	0	0	0	16911	1059	37	4	211	4	TWSG1	18	9360051	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1706586	9360051	68717197	1208	81662											
CEP192	55125	broad.mit.edu	37	chr18	13087592	13087592	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaaactgcaacagaactAtcaactgtatacttatttgg	5	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13087592	G	G	13087592	2	3	74	1	0	0	0	0	0	0	0	1	3281	436	16	5		5	CEP192	18	13087592	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3727541	13087592	64989656	1209	81663											
OSBPL1A	114876	broad.mit.edu	37	chr18	21894275	21894275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaatggtgtcatcaaagcAtttaataaagaagaggcagc	10	5	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21894275	T	T	21894275	3	4	74	1	0	0	0	0	1	0	0	0	11371	217	8	5	2013	5	OSBPL1A	18	21894275	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	8806683	21894275	56182973	1210	81664											
ZNF521	25925	broad.mit.edu	37	chr18	22805974	22805974	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacttagcaccacattgattAcagatatattctccagtggg	7	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22805974	C	C	22805974	3	2	74	1	0	0	0	0	1	0	0	0	18092	389	14	5	2047	5	ZNF521	18	22805974	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	911699	22805974	55271274	1211	81665											
ZNF521	25925	broad.mit.edu	37	chr18	22806155	22806155	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgatatgcttgttcagtTtaagaacgctgttgaatatt	8	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22806155	G	G	22806155	3	3	74	1	0	0	0	0	1	0	0	0	18092	1841	64	5	2228	5	ZNF521	18	22806155	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	181	22806155	55271093	1212	81666											
CHST9	83539	broad.mit.edu	37	chr18	24665236	24665236	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aataaaaaactgacaagtggGacctaattaaactaaagagc	7	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24665236	C	C	24665236	1	2	74	0	1	0	0	0	0	0	0	0	3442	1189	41	4		4	CHST9	18	24665236	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1859081	24665236	53412012	1213	81667											
CHST9	83539	broad.mit.edu	37	chr18	24722825	24722825	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttgttttcccgtaaaacTtcagtcttttcttgttctct	5	9	4	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24722825	G	G	24722825	1	3	74	0	1	0	0	0	0	0	0	0	3442	1624	56	5		5	CHST9	18	24722825	5'UTR	SNP	T	TCGA-17-Z045-01A-01W-0746-08	57589	24722825	53354423	1214	81668											
CDH2	1000	broad.mit.edu	37	chr18	25568621	25568621	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caattggcaggatcagataaTttagtgtatctacaaaatga	8	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25568621	C	C	25568621	2	2	74	1	0	0	0	0	0	0	0	1	3135	1490	52	5		5	CDH2	18	25568621	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	845796	25568621	52508627	1215	81669											
CDH2	1000	broad.mit.edu	37	chr18	25573592	25573592	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaattattaacgtatactGttgcactttctaaaaagaca	5	6	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25573592	T	T	25573592	3	4	74	1	0	0	0	0	1	0	0	0	3135	1386	48	3	1726	3	CDH2	18	25573592	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4971	25573592	52503656	1216	81670											
DSG3	1830	broad.mit.edu	37	chr18	29037052	29037052	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaaaccctgcagagaaGgagaagataactcaaaaaga	9	8	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29037052	T	T	29037052	4	4	74	1	0	0	0	0	0	1	0	0	4818	1001	35	2	191	2	DSG3	18	29037052	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3463460	29037052	49040196	1217	81671											
FAM59A	64762	broad.mit.edu	37	chr18	29867048	29867048	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggcagtatctgaagacttCactgctgctcccagagtccc	10	13	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29867048	T	T	29867048	2	4	74	1	0	0	0	0	0	0	0	1	5643	813	29	4		4	FAM59A	18	29867048	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	829996	29867048	48210200	1218	81672											
NOL4	8715	broad.mit.edu	37	chr18	31538076	31538076	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttggcaaagagtgtttcaTgtactttttaaatccttctg	9	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31538076	C	C	31538076	1	2	74	0	1	0	0	0	0	0	0	0	10619	1479	51	5		5	NOL4	18	31538076	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1671028	31538076	46539172	1219	81673											
DTNA	1837	broad.mit.edu	37	chr18	32408849	32408849	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggaatgaaatcataaactGtaaaatctgtaaaagacaca	6	6	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32408849	C	C	32408849	1	2	74	0	1	0	0	0	0	0	0	0	4828	1392	48	4		4	DTNA	18	32408849	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	870773	32408849	45668399	1220	81674											
GALNT1	2589	broad.mit.edu	37	chr18	33267090	33267090	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagctcaattttcgctGgtatcctgttccccaaagag	9	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33267090	A	A	33267090	4	1	74	1	0	0	0	0	0	1	0	0	6269	1357	47	4	818	4	GALNT1	18	33267090	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	858241	33267090	44810158	1221	81675											
FHOD3	80206	broad.mit.edu	37	chr18	34081944	34081944	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagaagggccctcttctcCctgaagcagatatttcaggt	10	10	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34081944	T	T	34081944	2	4	74	1	0	0	0	0	0	0	0	1	5940	610	22	4		4	FHOD3	18	34081944	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	814854	34081944	43995304	1222	81676											
RIT2	6014	broad.mit.edu	37	chr18	40687116	40687116	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agattttatgctggtttatgGgaggcaaaatggcctattgg	13	4	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40687116	A	A	40687116	1	1	74	0	1	0	0	0	0	0	0	0	13498	1247	43	4		4	RIT2	18	40687116	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6605172	40687116	37390132	1223	81677											
SETBP1	26040	broad.mit.edu	37	chr18	42449213	42449213	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcctcacagccagtgacCttgcagccagtgacctcaaa	8	15	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42449213	T	T	42449213	3	4	74	1	0	0	0	0	1	0	0	0	14242	681	24	4	511	4	SETBP1	18	42449213	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1762097	42449213	35628035	1224	81678											
SETBP1	26040	broad.mit.edu	37	chr18	42531077	42531077	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagcggggacgaccaaAgaagcagcctttgctcacag	12	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42531077	T	T	42531077	3	4	74	1	0	0	0	0	1	0	0	0	14242	72	3	5	1975	5	SETBP1	18	42531077	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	81864	42531077	35546171	1225	81679											
SETBP1	26040	broad.mit.edu	37	chr18	42532214	42532214	+	Frame_Shift_Del	DEL	C	-	-													gttccaagtgttcagaatctCccaccggagttacaccttct							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42532214	-	-	42532214	7	5	74	1	0	1	0	1	0	0	0	0	14242	855	30	0	3112	0	SETBP1	18	42532214	Frame_Shift_Del	DEL	C	TCGA-17-Z045-01A-01W-0746-08	1137	42532214	35545034	1226	81680											
SLC14A2	8170	broad.mit.edu	37	chr18	42859183	42859183	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgacagcagtaacaggttgtCtgagatattttaggataatt	10	5	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42859183	G	G	42859183	1	3	74	0	1	0	0	0	0	0	0	0	14510	928	32	4		4	SLC14A2	18	42859183	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	326969	42859183	35218065	1227	81681											
SLC14A2	8170	broad.mit.edu	37	chr18	43117568	43117568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaggatatttaaggaccGtagccttttttctgtgaaat	9	5	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43117568	T	T	43117568	1	4	74	0	1	0	0	0	0	0	0	0	14510	1160	40	3		3	SLC14A2	18	43117568	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	258385	43117568	34959680	1228	81682											
SLC14A1	6563	broad.mit.edu	37	chr18	43319026	43319026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgttcttgaaagaggtaaGgtatgtccaatctaaaatta	8	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43319026	T	T	43319026	1	4	74	0	1	0	0	0	0	0	0	0	14509	1015	35	2		2	SLC14A1	18	43319026	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	201458	43319026	34758222	1229	81683											
SLC14A1	6563	broad.mit.edu	37	chr18	43329753	43329753	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccccaggttggattgcCagcttgtacctggcccttct	9	14	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43329753	T	T	43329753	3	4	74	1	0	0	0	0	1	0	0	0	14509	594	21	4	1209	4	SLC14A1	18	43329753	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	10727	43329753	34747495	1230	81684											
KIAA1632	57724	broad.mit.edu	37	chr18	43490647	43490647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctcttcatttctttcaaCaaattgatatgagcaggact	6	9	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43490647	A	A	43490647	3	1	74	1	0	0	0	0	1	0	0	0	8319	477	17	3	3783	3	KIAA1632	18	43490647	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	160894	43490647	34586601	1231	81685											
DYM	54808	broad.mit.edu	37	chr18	46859823	46859823	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaacatagacagaatgaaGgagatggaagaaaaagatga	11	2	0	7			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46859823	A	A	46859823	1	1	74	0	1	0	0	0	0	0	0	0	4880	1015	35	4		4	DYM	18	46859823	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3369176	46859823	31217425	1232	81686											
DCC	1630	broad.mit.edu	37	chr18	49954209	49954209	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttccttccttcctttcttCcttccttccttccttccttc	0	20	1	0	rs2960620		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49954209	T	T	49954209	1	4	74	0	1	0	0	0	0	0	0	0	4315	870	30	4		4	DCC	18	49954209	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3094386	49954209	28123039	1233	81687											
CCDC68	80323	broad.mit.edu	37	chr18	52595982	52595982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctggcataccagtggaCaggaaagaaatcaggaactg	13	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52595982	A	A	52595982	1	1	74	0	1	0	0	0	0	0	0	0	2868	493	17	3		3	CCDC68	18	52595982	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2641773	52595982	25481266	1234	81688											
NEDD4L	23327	broad.mit.edu	37	chr18	55974642	55974642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaatttttcgtagtcatGtgacaaggacccctcttaag	8	10	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55974642	T	T	55974642	1	4	74	0	1	0	0	0	0	0	0	0	10406	1392	48	3		3	NEDD4L	18	55974642	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3378660	55974642	22102606	1235	81689											
MC4R	4160	broad.mit.edu	37	chr18	58039571	58039571	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcatcccacggtgggtGgagttcaccatgctggcagg	16	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58039571	A	A	58039571	2	1	74	1	0	0	0	0	0	0	0	1	9459	1335	47	4		4	MC4R	18	58039571	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2064929	58039571	20037677	1236	81690											
CDH20	28316	broad.mit.edu	37	chr18	59221422	59221422	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcctttttgttcctggcaGtgctggtgttgctcattttg	10	9	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59221422	A	A	59221422	5	1	74	1	0	0	0	0	0	0	1	0	3136	1043	36	4	1942	4	CDH20	18	59221422	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1181851	59221422	18855826	1237	81691											
SERPINB13	5275	broad.mit.edu	37	chr18	61264720	61264720	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatttccagtcttggccatCaaatcaatgatttaatgact	6	9	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61264720	A	A	61264720	1	1	74	0	1	0	0	0	0	0	0	0	14213	841	29	3		3	SERPINB13	18	61264720	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2043298	61264720	16812528	1238	81692											
SERPINB4	6318	broad.mit.edu	37	chr18	61328151	61328151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatctgtttaagtcagtgGtctcacagttacgggaattc	10	7	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61328151	T	T	61328151	1	4	74	0	1	0	0	0	0	0	0	0	14216	1276	44	3		3	SERPINB4	18	61328151	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	63431	61328151	16749097	1239	81693											
SERPINB11	89778	broad.mit.edu	37	chr18	61391443	61391443	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcttcctcctcctccCtcttcctcttcttcttcttc	0	22	6	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61391443	G	G	61391443	1	3	74	0	1	0	0	0	0	0	0	0	14211	696	24	4		4	SERPINB11	18	61391443	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	63292	61391443	16685805	1240	81694											
HMSD	284293	broad.mit.edu	37	chr18	61627615	61627615	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtccttttttctctaaacaActatgcaaacattaaaacct	2	10	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61627615	T	T	61627615	1	4	74	0	1	0	0	0	0	0	0	0	7313	58	2	5		5	HMSD	18	61627615	3'UTR	SNP	A	TCGA-17-Z045-01A-01W-0746-08	236172	61627615	16449633	1241	81695											
DOK6	220164	broad.mit.edu	37	chr18	67508428	67508428	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgatagatagtgtatctTttgtgcttctgaatctgttt	9	4	3	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67508428	A	A	67508428	1	1	74	0	1	0	0	0	0	0	0	0	4741	1856	64	5		5	DOK6	18	67508428	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	5880813	67508428	10568820	1242	81696											
RTTN	25914	broad.mit.edu	37	chr18	67753743	67753743	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttaagaggcccttgctgtCttgtatatagtttcatcaat	7	7	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67753743	A	A	67753743	1	1	74	0	1	0	0	0	0	0	0	0	13848	928	32	3		3	RTTN	18	67753743	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	245315	67753743	10323505	1243	81697											
RTTN	25914	broad.mit.edu	37	chr18	67817252	67817252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagattcaataaacttgttCcaggtcaatgctgtcatcat	7	8	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67817252	A	A	67817252	3	1	74	1	0	0	0	0	1	0	0	0	13848	856	30	3	4689	3	RTTN	18	67817252	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	63509	67817252	10259996	1244	81698											
TSHZ1	10194	broad.mit.edu	37	chr18	72999442	72999442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcaaaccacagaagaagGgccctgaggccgagactggg	16	11	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72999442	T	T	72999442	3	4	74	1	0	0	0	0	1	0	0	0	16748	1232	43	2	1947	2	TSHZ1	18	72999442	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5182190	72999442	5077806	1245	81699											
ZNF236	7776	broad.mit.edu	37	chr18	74620298	74620298	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagcttgcccagcagctcCaacagcatcagcaggcagcc	10	15	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74620298	T	T	74620298	4	4	74	1	0	0	0	0	0	1	0	0	17915	595	21	4	2368	4	ZNF236	18	74620298	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1620856	74620298	3456950	1246	81700											
OR4F17	81099	broad.mit.edu	37	chr19	110736	110736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagggactccagaccttcCtatttatgttgttttttgta	7	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110736	A	A	110736	3	1	74	1	0	0	0	0	1	0	0	0	11156	680	24	2	60	2	OR4F17	19	110736	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08		110736	59018247	1247	81701											
BTBD2	55643	broad.mit.edu	37	chr19	1986656	1986656	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggagtctgggccctgtaggGaataggggtacagtgaggtc	19	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1986656	C	C	1986656	1	2	74	0	1	0	0	0	0	0	0	0	1553	1189	41	4		4	BTBD2	19	1986656	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1875920	1986656	57142327	1248	81702											
LMNB2	84823	broad.mit.edu	37	chr19	2432450	2432450	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgcaggatgtacttgggCgtgaacttgtaggcgatctc	15	9	1	1	rs11882908	byFrequency;by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2432450	A	A	2432450	2	1	74	1	0	0	0	0	0	0	0	1	8924	755	27	3		3	LMNB2	19	2432450	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	445794	2432450	56696533	1249	81703											
PNPLA6	10908	broad.mit.edu	37	chr19	7621273	7621273	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgcttgctcaccccctAttgatgaaccttatctgtga	8	12	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7621273	G	G	7621273	1	3	74	0	1	0	0	0	0	0	0	0	12264	464	16	5		5	PNPLA6	19	7621273	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5188823	7621273	51507710	1250	81704											
MUC16	94025	broad.mit.edu	37	chr19	9009791	9009791	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatagttatctttaaatatAggcagtatttaattgactga	6	3	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9009791	T	T	9009791	1	4	74	0	1	0	0	0	0	0	0	0	10067	435	15	5		5	MUC16	19	9009791	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1388518	9009791	50119192	1251	81705											
MUC16	94025	broad.mit.edu	37	chr19	9065829	9065829	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acattggtgatgtggctttgGatgtctctgagtcagctaag	13	6	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9065829	A	A	9065829	3	1	74	1	0	0	0	0	1	0	0	0	10067	1174	41	4	22234	4	MUC16	19	9065829	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	56038	9065829	50063154	1252	81706											
COL5A3	50509	broad.mit.edu	37	chr19	10116529	10116529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggggtcacctaggagaCccagcgctggccccagtgcc	15	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10116529	A	A	10116529	3	1	74	1	0	0	0	0	1	0	0	0	3730	507	18	3	5117	3	COL5A3	19	10116529	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1050700	10116529	49012454	1253	81707											
ASF1B	55723	broad.mit.edu	37	chr19	14232202	14232202	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagacaaaggtctttttctCctcttctaacacagtactgt	6	10	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14232202	A	A	14232202	1	1	74	0	1	0	0	0	0	0	0	0	1042	870	30	3		3	ASF1B	19	14232202	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4115673	14232202	44896781	1254	81708											
EMR3	84658	broad.mit.edu	37	chr19	14732404	14732404	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgactatggaaattgctActttgcattcagtgttgtgg	11	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14732404	T	T	14732404	1	4	74	0	1	0	0	0	0	0	0	0	5148	406	14	5		5	EMR3	19	14732404	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	500202	14732404	44396579	1255	81709											
C19orf42	79086	broad.mit.edu	37	chr19	16764924	16764924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggctcagcaagaattccCggatgttgtcacctggaaga	12	9	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16764924	A	A	16764924	3	1	74	1	0	0	0	0	1	0	0	0	1944	652	23	1	101	1	C19orf42	19	16764924	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2032520	16764924	42364059	1256	81710											
NWD1	284434	broad.mit.edu	37	chr19	16874686	16874686	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catacggttgcaaacctgcgGaagctgaaggagttgcccta	12	10	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16874686	T	T	16874686	2	4	74	1	0	0	0	0	0	0	0	1	10876	1161	41	3		3	NWD1	19	16874686	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	109762	16874686	42254297	1257	81711											
NWD1	284434	broad.mit.edu	37	chr19	16925764	16925764	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaattttattccatgcagCcaactctggaatgtgtagga	10	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16925764	G	G	16925764	1	3	74	0	1	0	0	0	0	0	0	0	10876	754	26	4		4	NWD1	19	16925764	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	51078	16925764	42203219	1258	81712											
NWD1	284434	broad.mit.edu	37	chr19	16925862	16925862	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctgacagtccagtttGtccatgctgtggtaaacaga	10	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16925862	T	T	16925862	1	4	74	0	1	0	0	0	0	0	0	0	10876	1377	48	3		3	NWD1	19	16925862	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	98	16925862	42203121	1259	81713											
NCAN	1463	broad.mit.edu	37	chr19	19338219	19338219	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagggccccagtgccaggcCagccaccccagacctgtttt	11	17	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19338219	T	T	19338219	3	4	74	1	0	0	0	0	1	0	0	0	10299	594	21	4	1816	4	NCAN	19	19338219	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2412357	19338219	39790764	1260	81714											
HAPLN4	404037	broad.mit.edu	37	chr19	19375753	19375753	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccagcatcaccgacagcCccccaggtaggtcaggcaga	10	16	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19375753	A	A	19375753	1	1	74	0	1	0	0	0	0	0	0	0	7023	638	22	2		2	HAPLN4	19	19375753	5'Flank	SNP	C	TCGA-17-Z045-01A-01W-0746-08	37534	19375753	39753230	1261	81715											
ZNF536	9745	broad.mit.edu	37	chr19	30934886	30934886	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccactctgcggcaagcgcttCcgcttcaacagcatcctctc	7	18	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934886	T	T	30934886	2	4	74	1	0	0	0	0	0	0	0	1	18101	854	30	4		4	ZNF536	19	30934886	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	11559133	30934886	28194097	1262	81716			1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	30935348	30935348	+	Missense_Mutation	SNP	C	G	G													gaggagctggaccgccacatCcgcatcttgcacaagcccta							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30935348	G	G	30935348	3	3	74	1	0	0	0	0	1	0	0	0	18101	845	30	4	881	4	ZNF536	19	30935348	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	462	30935348	28193635	1263	81717	372	2	1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	30935354	30935354	+	Silent	SNP	C	T	T													ctggaccgccacatccgcatCttgcacaagccctacaagtg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935354	T	T	30935354	2	4	74	1	0	0	0	0	0	0	0	1	18101	903	32	4		4	ZNF536	19	30935354	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6	30935354	28193629	1264	81718	372	2	1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	30935951	30935951	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctgggatgcctcaatctCgtgccgccgctgaaatccag	10	15	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935951	T	T	30935951	2	4	74	1	0	0	0	0	0	0	0	1	18101	871	31	4		4	ZNF536	19	30935951	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	597	30935951	28193032	1265	81719			1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	30936085	30936085	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catggaacatggcttcttgtCtaaagagcatccgctgcagc	10	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30936085	G	G	30936085	3	3	74	1	0	0	0	0	1	0	0	0	18101	913	32	4	1618	4	ZNF536	19	30936085	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	134	30936085	28192898	1266	81720			1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	30936096	30936096	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttcttgtctaaagagcatCcgctgcagcgcaaccacgaa	9	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30936096	T	T	30936096	3	4	74	1	0	0	0	0	1	0	0	0	18101	855	30	4	1629	4	ZNF536	19	30936096	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	11	30936096	28192887	1267	81721			1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	30936551	30936551	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgccgggctcctctaacgtCaccgaggagagcggggtcgg	16	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30936551	G	G	30936551	2	3	74	1	0	0	0	0	0	0	0	1	18101	813	29	4		4	ZNF536	19	30936551	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	455	30936551	28192432	1268	81722			1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	30936612	30936612	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgcccaggaggacagcCcgcacccctcctcgccatcc	11	19	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30936612	T	T	30936612	3	4	74	1	0	0	0	0	1	0	0	0	18101	623	22	4	2145	4	ZNF536	19	30936612	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	61	30936612	28192371	1269	81723			1	62		8	7	1727	N	C	4.317876e-10
ZNF536	9745	broad.mit.edu	37	chr19	31038849	31038849	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttatatcaaaatcttgcaGgtgagaaaccctacaagtgt	7	8	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31038849	A	A	31038849	5	1	74	1	0	0	0	0	0	0	1	0	18101	1014	35	4	2333	4	ZNF536	19	31038849	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	102237	31038849	28090134	1270	81724											
CD22	933	broad.mit.edu	37	chr19	35829208	35829208	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaatgggaaagaaatgcagGgaaggacagaggagaaagtc	15	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35829208	A	A	35829208	3	1	74	1	0	0	0	0	1	0	0	0	3015	1233	43	4	1141	4	CD22	19	35829208	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4790359	35829208	23299775	1271	81725											
CD22	933	broad.mit.edu	37	chr19	35832042	35832042	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgccctgaatgtccagtGtgagtccctgggctaggcag	14	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35832042	T	T	35832042	5	4	74	1	0	0	0	0	0	0	1	0	3015	1391	48	3	1530	3	CD22	19	35832042	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2834	35832042	23296941	1272	81726											
ZNF571	51276	broad.mit.edu	37	chr19	38055807	38055807	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccataaataaaggccttgTcacattccttacatttgtag	6	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38055807	A	A	38055807	3	1	74	1	0	0	0	0	1	0	0	0	18130	1667	58	5	310	5	ZNF571	19	38055807	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2223765	38055807	21073176	1273	81727											
SIPA1L3	23094	broad.mit.edu	37	chr19	38610446	38610446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacactcaaaatcttctatgGacgaggagaccacatcttcc	6	13	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38610446	T	T	38610446	3	4	74	1	0	0	0	0	1	0	0	0	14444	1174	41	3	2818	3	SIPA1L3	19	38610446	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	554639	38610446	20518537	1274	81728											
GGN	199720	broad.mit.edu	37	chr19	38877076	38877076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctgaggcagcaaagaGgccgccgcctccgccgcccc	13	19	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38877076	T	T	38877076	3	4	74	1	0	0	0	0	1	0	0	0	6422	1000	35	2	1140	2	GGN	19	38877076	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	266630	38877076	20251907	1275	81729											
RYR1	6261	broad.mit.edu	37	chr19	38976291	38976291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcttccactcgcacaccCtgcgcctctaccgcgctgtg	9	19	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38976291	A	A	38976291	3	1	74	1	0	0	0	0	1	0	0	0	13879	680	24	2	5130	2	RYR1	19	38976291	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	99215	38976291	20152692	1276	81730											
IL29	282618	broad.mit.edu	37	chr19	39785678	39785678	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaactgctgggattacagGcgtgagccaccatgcccagc	11	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39785678	T	T	39785678	1	4	74	0	1	0	0	0	0	0	0	0	7755	1218	42	3		3	IL29	19	39785678	5'Flank	SNP	G	TCGA-17-Z045-01A-01W-0746-08	809387	39785678	19343305	1277	81731											
LGALS13	29124	broad.mit.edu	37	chr19	40094554	40094554	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcaatcattccctccaGttatgtccctgacccacaag	5	14	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40094554	C	C	40094554	1	2	74	0	1	0	0	0	0	0	0	0	8812	1044	36	4		4	LGALS13	19	40094554	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	308876	40094554	19034429	1278	81732											
SPTBN4	57731	broad.mit.edu	37	chr19	40996178	40996178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccctcgagtggcccctgcCaagccccgcaacatgggact	11	17	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40996178	A	A	40996178	1	1	74	0	1	0	0	0	0	0	0	0	15239	609	21	2		2	SPTBN4	19	40996178	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	901624	40996178	18132805	1279	81733											
CYP2A7	1549	broad.mit.edu	37	chr19	41383234	41383234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtccggtcctcaaacttgGgctgccggttcttgccgatc	12	13	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41383234	T	T	41383234	3	4	74	1	0	0	0	0	1	0	0	0	4196	1232	43	2	474	2	CYP2A7	19	41383234	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	387056	41383234	17745749	1280	81734											
AXL	558	broad.mit.edu	37	chr19	41745202	41745202	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagcctcccagtaccccTggaggcctggcgcccaggta	13	16	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41745202	A	A	41745202	3	1	74	1	0	0	0	0	1	0	0	0	1243	1580	55	5	1302	5	AXL	19	41745202	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	361968	41745202	17383781	1281	81735											
PSG6	5675	broad.mit.edu	37	chr19	43514447	43514447	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaggctttcagacgtgAgaaaggctgattgctatttt	12	5	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43514447	T	T	43514447	1	4	74	0	1	0	0	0	0	0	0	0	12765	319	11	5		5	PSG6	19	43514447	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1769245	43514447	15614536	1282	81736											
PSG6	5675	broad.mit.edu	37	chr19	43529239	43529239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagagcatcagtcaatatTgagacctatgtattggggtg	13	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43529239	C	C	43529239	1	2	74	0	1	0	0	0	0	0	0	0	12765	1827	63	5		5	PSG6	19	43529239	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	14792	43529239	15599744	1283	81737											
PSG9	5678	broad.mit.edu	37	chr19	43770536	43770536	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctaaagaggttttggatCattcatttcttcattcaagt	6	7	6	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43770536	A	A	43770536	1	1	74	0	1	0	0	0	0	0	0	0	12768	841	29	3		3	PSG9	19	43770536	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	241297	43770536	15358447	1284	81738											
C19orf61	56006	broad.mit.edu	37	chr19	44247718	44247718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactttgagaggccaaagCgggaggattgcttgagccca	14	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44247718	A	A	44247718	1	1	74	0	1	0	0	0	0	0	0	0	1962	783	27	3		3	C19orf61	19	44247718	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	477182	44247718	14881265	1285	81739											
KCNN4	3783	broad.mit.edu	37	chr19	44284578	44284578	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggagtccagaccccagCccctcctccctcagacccag	7	22	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44284578	T	T	44284578	1	4	74	0	1	0	0	0	0	0	0	0	8151	754	26	4		4	KCNN4	19	44284578	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	36860	44284578	14844405	1286	81740											
ZNF229	7772	broad.mit.edu	37	chr19	44944030	44944030	+	Intron	DEL	G	-	-													gcatattagcgaggacagttGggggaacctaatttatttca							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44944030	-	-	44944030	6	5	74	0	1	1	0	1	0	0	0	0	17908	1363	47	0		0	ZNF229	19	44944030	Intron	DEL	G	TCGA-17-Z045-01A-01W-0746-08	659452	44944030	14184953	1287	81741											
PVRL2	5819	broad.mit.edu	37	chr19	45371723	45371724	+	Intron	INS	-	T	T													tttttttcttttcctttttcINStttttttttttttttctttt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45371724	T	T	45371723	6	5	74	0	1	1	1	0	0	0	0	0	12948	928	32	0		0	PVRL2	19	45371723	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	427693	45371723	13757260	1288	81742											
VASP	7408	broad.mit.edu	37	chr19	46029247	46029247	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaattgcagaaagtgaaagAggaaatcattgaaggtgagg	15	2	1	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46029247	G	G	46029247	3	3	74	1	0	0	0	0	1	0	0	0	17255	304	11	5	1137	5	VASP	19	46029247	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	657524	46029247	13099736	1289	81743											
SNRPD2	6633	broad.mit.edu	37	chr19	46191107	46191107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggtgcaggtgctaggcCgggatgaccaagctgccaaa	16	9	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46191107	A	A	46191107	1	1	74	0	1	0	0	0	0	0	0	0	14979	667	23	1		1	SNRPD2	19	46191107	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	161860	46191107	12937876	1290	81744											
PTGIR	5739	broad.mit.edu	37	chr19	47124832	47124832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaaggatgaagacccagGggtccaggatggggttgaag	18	5	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47124832	T	T	47124832	3	4	74	1	0	0	0	0	1	0	0	0	12857	1232	43	2	298	2	PTGIR	19	47124832	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	933725	47124832	12004151	1291	81745											
SULT2A1	6822	broad.mit.edu	37	chr19	48385427	48385427	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttccagaaaaaataaccaGacaccaaaacatctctggga	5	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48385427	T	T	48385427	3	4	74	1	0	0	0	0	1	0	0	0	15499	942	33	3	487	3	SULT2A1	19	48385427	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1260595	48385427	10743556	1292	81746											
RUVBL2	10856	broad.mit.edu	37	chr19	49506546	49506546	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcatgtaggtgcccactcCcacatccggggactggggct	12	14	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49506546	G	G	49506546	2	3	74	1	0	0	0	0	0	0	0	1	13864	610	22	4		4	RUVBL2	19	49506546	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1121119	49506546	9622437	1293	81747											
MYBPC2	4606	broad.mit.edu	37	chr19	50957559	50957559	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgtgcgcatcacctcGgttggagaggattgggccat	16	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50957559	T	T	50957559	2	4	74	1	0	0	0	0	0	0	0	1	10106	1103	39	1		1	MYBPC2	19	50957559	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1451013	50957559	8171424	1294	81748											
KLK15	55554	broad.mit.edu	37	chr19	51328990	51328990	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgttccatgtcaggcggGgctgctggccagctgtgggg	17	10	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51328990	T	T	51328990	1	4	74	0	1	0	0	0	0	0	0	0	8474	1247	43	2		2	KLK15	19	51328990	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	371431	51328990	7799993	1295	81749											
SIGLEC12	89858	broad.mit.edu	37	chr19	52000316	52000316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccctgtatttcctattgGggagctggaggggtaactga	14	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52000316	T	T	52000316	1	4	74	0	1	0	0	0	0	0	0	0	14421	1247	43	2		2	SIGLEC12	19	52000316	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	671326	52000316	7128667	1296	81750											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002319	52002319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgagggaggggggggcCggggctcacccacaaaaggg	21	9	1	1	rs111229073		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52002319	A	A	52002319	1	1	74	0	1	0	0	0	0	0	0	0	14421	667	23	1		1	SIGLEC12	19	52002319	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2003	52002319	7126664	1297	81751											
ZNF665	79788	broad.mit.edu	37	chr19	53669522	53669522	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttcaagtctctccaacTtcaccgtgtagaacgcttct	6	13	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53669522	G	G	53669522	3	3	74	1	0	0	0	0	1	0	0	0	18200	1609	56	5	1819	5	ZNF665	19	53669522	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	1667203	53669522	5459461	1298	81752											
PRKCG	5582	broad.mit.edu	37	chr19	54392933	54392933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgcctgcatagctacagCagccccaccttctgcgacca	7	18	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54392933	A	A	54392933	3	1	74	1	0	0	0	0	1	0	0	0	12618	709	25	3	341	3	PRKCG	19	54392933	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	723411	54392933	4736050	1299	81753											
LILRB5	10990	broad.mit.edu	37	chr19	54756142	54756142	+	Intron	DEL	T	-	-													cccccttggccccagaccccTcccagcctgtgctcctgccc					rs72087	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54756142	-	-	54756142	6	5	74	0	1	1	0	1	0	0	0	0	8866	1566	54	0		0	LILRB5	19	54756142	Intron	DEL	T	TCGA-17-Z045-01A-01W-0746-08	363209	54756142	4372841	1300	81754											
LILRA1	11024	broad.mit.edu	37	chr19	55106169	55106169	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actctgggctgagccaggctCtgtgatcacccaggggagtc	14	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55106169	A	A	55106169	3	1	74	1	0	0	0	0	1	0	0	0	8856	913	32	3	120	3	LILRA1	19	55106169	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	350027	55106169	4022814	1301	81755											
LILRA1	11024	broad.mit.edu	37	chr19	55106512	55106512	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctcacagcccagccctgggGatgaagtgggaggtgtgagc	16	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55106512	C	C	55106512	1	2	74	0	1	0	0	0	0	0	0	0	8856	1189	41	4		4	LILRA1	19	55106512	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	343	55106512	4022471	1302	81756											
KIR3DL3	115653	broad.mit.edu	37	chr19	55247207	55247207	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcacctatggcctcccCctgtatgttggtatctgctt	9	13	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55247207	G	G	55247207	1	3	74	0	1	0	0	0	0	0	0	0	8393	638	22	4		4	KIR3DL3	19	55247207	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	140695	55247207	3881776	1303	81757											
KIR2DL3	3804	broad.mit.edu	37	chr19	55250038	55250038	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatggtcgtcagcatggtgTgtgttggtgagtcctggaag	16	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55250038	C	C	55250038	1	2	74	0	1	0	0	0	0	0	0	0	8388	1696	59	5		5	KIR2DL3	19	55250038	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2831	55250038	3878945	1304	81758											
NCR1	9437	broad.mit.edu	37	chr19	55420766	55420766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggatacgggaaggtccaggCggagttccccctgggccctg	16	13	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55420766	A	A	55420766	3	1	74	1	0	0	0	0	1	0	0	0	10332	768	27	3	532	3	NCR1	19	55420766	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	170728	55420766	3708217	1305	81759											
U2AF2	11338	broad.mit.edu	37	chr19	56171788	56171788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcttacatggttgcggGgagggtgaaagggtgcctgg	20	5	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56171788	T	T	56171788	1	4	74	0	1	0	0	0	0	0	0	0	16949	1247	43	2		2	U2AF2	19	56171788	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	751022	56171788	2957195	1306	81760											
NLRP5	126206	broad.mit.edu	37	chr19	56569599	56569599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttctgggtgtcctgacCctgcaggttgaaggcatgtg	13	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56569599	A	A	56569599	1	1	74	0	1	0	0	0	0	0	0	0	10575	638	22	2		2	NLRP5	19	56569599	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	397811	56569599	2559384	1307	81761											
ZNF582	147948	broad.mit.edu	37	chr19	56896007	56896007	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcgactaaaggccttctcaCaatctttacattcatacggt	5	11	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56896007	G	G	56896007	3	3	74	1	0	0	0	0	1	0	0	0	18141	478	17	4	778	4	ZNF582	19	56896007	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	326408	56896007	2232976	1308	81762											
ZNF470	388566	broad.mit.edu	37	chr19	57085574	57085574	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcatttttttctttttcctAatatgtacagcataactagg	4	8	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57085574	T	T	57085574	1	4	74	0	1	0	0	0	0	0	0	0	18056	377	13	5		5	ZNF470	19	57085574	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	189567	57085574	2043409	1309	81763											
ZNF547	284306	broad.mit.edu	37	chr19	57889018	57889018	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaagcctttctttgtaagtCtcaccttgttcgtcaccaga	7	11	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57889018	G	G	57889018	3	3	74	1	0	0	0	0	1	0	0	0	18106	913	32	4	684	4	ZNF547	19	57889018	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	803444	57889018	1239965	1310	81764											
ZNF773	374928	broad.mit.edu	37	chr19	58017710	58017710	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actacatttacttcatcaacAtttctcttctttcaggtagt	3	10	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58017710	T	T	58017710	1	4	74	0	1	0	0	0	0	0	0	0	18275	232	8	5		5	ZNF773	19	58017710	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	128692	58017710	1111273	1311	81765											
ZSCAN1	284312	broad.mit.edu	37	chr19	58556787	58556787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagaacgaggcagccaaGggcagtgccaccaaagactt	12	10	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58556787	T	T	58556787	1	4	74	0	1	0	0	0	0	0	0	0	18355	1015	35	2		2	ZSCAN1	19	58556787	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	539077	58556787	572196	1312	81766											
DEFB126	81623	broad.mit.edu	37	chr20	126164	126164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatgtgcggcaaacaaaGggactgctgtgttccagctg	14	9	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126164	T	T	126164	3	4	74	1	0	0	0	0	1	0	0	0	4451	1000	35	2	173	2	DEFB126	20	126164	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08		126164	62899356	1313	81767											
PDYN	5173	broad.mit.edu	37	chr20	1971855	1971855	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgggcaagagaccctgccAcataataactgctcagtaaa	9	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1971855	G	G	1971855	1	3	74	0	1	0	0	0	0	0	0	0	11793	174	6	5		5	PDYN	20	1971855	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1845691	1971855	61053665	1314	81768											
TMC2	117532	broad.mit.edu	37	chr20	2592719	2592719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttggaaggactctgtccaGgggagagcagaagctagatg	15	6	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2592719	T	T	2592719	1	4	74	0	1	0	0	0	0	0	0	0	16108	1015	35	2		2	TMC2	20	2592719	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	620864	2592719	60432801	1315	81769											
C20orf141	128653	broad.mit.edu	37	chr20	2795875	2795875	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgaagcacgtgaggatccGatcccagttcctccaagggg	12	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2795875	T	T	2795875	2	4	74	1	0	0	0	0	0	0	0	1	2111	1045	37	3		3	C20orf141	20	2795875	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	203156	2795875	60229645	1316	81770											
SLC23A2	9962	broad.mit.edu	37	chr20	4837809	4837809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttgttccctttgcccaCacccttcttccatttccgga	5	15	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4837809	A	A	4837809	3	1	74	1	0	0	0	0	1	0	0	0	14577	478	17	3	194	3	SLC23A2	20	4837809	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2041934	4837809	58187711	1317	81771											
PLCB1	23236	broad.mit.edu	37	chr20	8364688	8364688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatcttagcggtgttctctGtatttcctgaatttgcatgt	9	7	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8364688	T	T	8364688	1	4	74	0	1	0	0	0	0	0	0	0	12122	1392	48	3		3	PLCB1	20	8364688	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3526879	8364688	54660832	1318	81772											
PLCB4	5332	broad.mit.edu	37	chr20	9389681	9389681	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgtaggactctttttttCtgttttccttaataagttac	6	7	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9389681	A	A	9389681	1	1	74	0	1	0	0	0	0	0	0	0	12125	928	32	3		3	PLCB4	20	9389681	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1024993	9389681	53635839	1319	81773											
PAK7	57144	broad.mit.edu	37	chr20	9519912	9519912	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgctccaagtgaccacaCcggctgtcagtggagagatg	13	12	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9519912	T	T	9519912	1	4	74	0	1	0	0	0	0	0	0	0	11499	522	18	4		4	PAK7	20	9519912	3'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	130231	9519912	53505608	1320	81774											
PAK7	57144	broad.mit.edu	37	chr20	9524904	9524904	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagtgagtggggatcaaatGtggagctaaaagtcattgcc	13	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9524904	A	A	9524904	1	1	74	0	1	0	0	0	0	0	0	0	11499	1392	48	4		4	PAK7	20	9524904	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4992	9524904	53500616	1321	81775											
RBBP9	10741	broad.mit.edu	37	chr20	18474555	18474555	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtatttctcaagcaagCatgactggagcccacaaagg	10	10	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18474555	T	T	18474555	1	4	74	0	1	0	0	0	0	0	0	0	13214	725	25	4		4	RBBP9	20	18474555	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8949651	18474555	44550965	1322	81776											
SLC24A3	57419	broad.mit.edu	37	chr20	19261613	19261613	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctccccagagcttgacctCatggacctcgtaggggaaga	12	12	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19261613	A	A	19261613	2	1	74	1	0	0	0	0	0	0	0	1	14581	813	29	3		3	SLC24A3	20	19261613	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	787058	19261613	43763907	1323	81777											
RALGAPA2	57186	broad.mit.edu	37	chr20	20582194	20582194	+	Intron	SNP	G	A	A													ccagagcataaagctaaaaaGatgtagagacatttcattta							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20582194	A	A	20582194	1	1	74	0	1	0	0	0	0	0	0	0	13122	957	33	4		4	RALGAPA2	20	20582194	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1320581	20582194	42443326	1324	81778	373	2									
RALGAPA2	57186	broad.mit.edu	37	chr20	20582196	20582196	+	Intron	SNP	T	A	A													agagcataaagctaaaaagaTgtagagacatttcatttaat							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20582196	A	A	20582196	1	1	74	0	1	0	0	0	0	0	0	0	13122	1479	51	5		5	RALGAPA2	20	20582196	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2	20582196	42443324	1325	81779	373	2									
GZF1	64412	broad.mit.edu	37	chr20	23345107	23345107	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcttcgcctcctgggtcaCctgtgtgacgtgacagtcag	13	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23345107	T	T	23345107	2	4	74	1	0	0	0	0	0	0	0	1	6979	506	18	4		4	GZF1	20	23345107	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2762911	23345107	39680413	1326	81780											
NAPB	63908	broad.mit.edu	37	chr20	23361956	23361956	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattgtgtttgccccaaccTaggcacagaacgcagagtta	9	12	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23361956	C	C	23361956	5	2	74	1	0	0	0	0	0	0	1	0	10256	1536	53	5	352	5	NAPB	20	23361956	Splice_Site	SNP	T	TCGA-17-Z045-01A-01W-0746-08	16849	23361956	39663564	1327	81781											
TMEM90B	79953	broad.mit.edu	37	chr20	24565623	24565623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgcagccttctacttgtcCcatgaggtaaggcctccttg	9	13	1	1	rs141938685	byFrequency	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24565623	A	A	24565623	2	1	74	1	0	0	0	0	0	0	0	1	16342	610	22	2		2	TMEM90B	20	24565623	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1203667	24565623	38459897	1328	81782											
CEP250	11190	broad.mit.edu	37	chr20	34055455	34055455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggttagggacaggcagGgggaggtgccaggaacattc	19	6	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34055455	T	T	34055455	1	4	74	0	1	0	0	0	0	0	0	0	3282	1247	43	2		2	CEP250	20	34055455	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	9489832	34055455	28970065	1329	81783											
EPB41L1	2036	broad.mit.edu	37	chr20	34783267	34783267	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagccggagcaggaaaccaCgccgagacacaagcaggagg	14	12	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34783267	T	T	34783267	3	4	74	1	0	0	0	0	1	0	0	0	5194	536	19	4	1512	4	EPB41L1	20	34783267	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	727812	34783267	28242253	1330	81784											
C20orf132	140699	broad.mit.edu	37	chr20	35757453	35757453	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagccacagccacatatgcCatcttctcctgtgcaggctc	7	16	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35757453	T	T	35757453	3	4	74	1	0	0	0	0	1	0	0	0	2108	594	21	4	1417	4	C20orf132	20	35757453	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	974186	35757453	27268067	1331	81785											
BPI	671	broad.mit.edu	37	chr20	36959463	36959463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacaggctgctcctggaaCtgaagcactcaaatattggc	9	12	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36959463	A	A	36959463	3	1	74	1	0	0	0	0	1	0	0	0	1499	564	20	3	1301	3	BPI	20	36959463	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1202010	36959463	26066057	1332	81786											
TOP1	7150	broad.mit.edu	37	chr20	39750309	39750309	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttttcctctacagctcaTaaccttaccactattatttc	1	13	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39750309	C	C	39750309	1	2	74	0	1	0	0	0	0	0	0	0	16487	1421	49	5		5	TOP1	20	39750309	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	2790846	39750309	23275211	1333	81787											
PABPC1L	80336	broad.mit.edu	37	chr20	43547788	43547788	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggtttcctgaggacttcCcagactcccctttgagccag	11	13	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43547788	T	T	43547788	1	4	74	0	1	0	0	0	0	0	0	0	11458	638	22	4		4	PABPC1L	20	43547788	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3797479	43547788	19477732	1334	81788											
SEMG1	6406	broad.mit.edu	37	chr20	43836227	43836228	+	Frame_Shift_Ins	INS	-	A	A													acataagacgacaaaatcacINSaacgacatctaggtggaagt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43836228	A	A	43836227	7	5	74	1	0	1	1	0	0	0	0	0	14157	479	17	0	295	0	SEMG1	20	43836227	Frame_Shift_Ins	INS	-	TCGA-17-Z045-01A-01W-0746-08	288439	43836227	19189293	1335	81789											
DNTTIP1	116092	broad.mit.edu	37	chr20	44433786	44433786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctattttttgcacagtGggacccagctcgcctgaatg	9	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44433786	T	T	44433786	3	4	74	1	0	0	0	0	1	0	0	0	4721	1362	47	2	639	2	DNTTIP1	20	44433786	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	597559	44433786	18591734	1336	81790											
PLTP	5360	broad.mit.edu	37	chr20	44540122	44540122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggggtggggtggggtcGcaggagttatctgagccgct	20	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44540122	T	T	44540122	1	4	74	0	1	0	0	0	0	0	0	0	12209	1102	38	3		3	PLTP	20	44540122	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	106336	44540122	18485398	1337	81791											
SLC12A5	57468	broad.mit.edu	37	chr20	44665793	44665793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccataagcctgtgaggCctggagcaacccccttctgc	10	16	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44665793	A	A	44665793	1	1	74	0	1	0	0	0	0	0	0	0	14499	754	26	3		3	SLC12A5	20	44665793	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	125671	44665793	18359727	1338	81792											
CDH22	64405	broad.mit.edu	37	chr20	44935371	44935371	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatgggtcggggttggggGggacgaggaaatggtcattg	21	3	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44935371	A	A	44935371	1	1	74	0	1	0	0	0	0	0	0	0	3137	1247	43	4		4	CDH22	20	44935371	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	269578	44935371	18090149	1339	81793											
SLC35C2	51006	broad.mit.edu	37	chr20	44987841	44987841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacgaacactgcacccaccCttcagtccttcatcaatcct	4	17	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44987841	A	A	44987841	1	1	74	0	1	0	0	0	0	0	0	0	14694	696	24	2		2	SLC35C2	20	44987841	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	52470	44987841	18037679	1340	81794											
ZMYND8	23613	broad.mit.edu	37	chr20	45985341	45985341	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagaaatcacactgctcgCccacaattcggatgtctcag	8	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45985341	T	T	45985341	1	4	74	0	1	0	0	0	0	0	0	0	17837	754	26	4		4	ZMYND8	20	45985341	5'Flank	SNP	C	TCGA-17-Z045-01A-01W-0746-08	997500	45985341	17040179	1341	81795											
DDX27	55661	broad.mit.edu	37	chr20	47839548	47839548	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttcgaaagaaaaggaaaAcagaggtgagaagaaaagtg	13	2	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47839548	T	T	47839548	3	4	74	1	0	0	0	0	1	0	0	0	4387	43	2	5	398	5	DDX27	20	47839548	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1854207	47839548	15185972	1342	81796											
NFATC2	4773	broad.mit.edu	37	chr20	50052213	50052213	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggaaacgtgagggggattGagagacactcaggtgcgtca	17	6	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50052213	A	A	50052213	1	1	74	0	1	0	0	0	0	0	0	0	10457	1305	45	4		4	NFATC2	20	50052213	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2212665	50052213	12973307	1343	81797											
NFATC2	4773	broad.mit.edu	37	chr20	50090788	50090788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccagtcactgggggaaaCtgcaatacactcacataagc	9	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50090788	A	A	50090788	1	1	74	0	1	0	0	0	0	0	0	0	10457	580	20	3		3	NFATC2	20	50090788	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	38575	50090788	12934732	1344	81798											
ZFP64	55734	broad.mit.edu	37	chr20	50803613	50803613	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgttgtgccacctggaactCcatgggacaaagggaaagta	12	10	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50803613	A	A	50803613	1	1	74	0	1	0	0	0	0	0	0	0	17778	870	30	3		3	ZFP64	20	50803613	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	712825	50803613	12221907	1345	81799											
PHACTR3	116154	broad.mit.edu	37	chr20	58349579	58349579	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcccattaagtgtggggatCtcggccagaggtctagtgtc	15	9	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58349579	A	A	58349579	1	1	74	0	1	0	0	0	0	0	0	0	11906	928	32	3		3	PHACTR3	20	58349579	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	7545966	58349579	4675941	1346	81800											
COL9A3	1299	broad.mit.edu	37	chr20	61468464	61468464	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagttagccgcgcacctaAggaagcctttggcacccggg	12	14	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61468464	C	C	61468464	2	2	74	1	0	0	0	0	0	0	0	1	3741	63	3	5		5	COL9A3	20	61468464	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	3118885	61468464	1557056	1347	81801											
TPTE	7179	broad.mit.edu	37	chr21	10970032	10970032	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttcgcaggtgcctcctcGgttgctcctttaaattcact	7	13	2	0	rs147186596		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10970032	C	C	10970032	2	2	74	1	0	0	0	0	0	0	0	1	16554	1103	39	4		4	TPTE	21	10970032	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08		10970032	37159863	1348	81802											
TPTE	7179	broad.mit.edu	37	chr21	10973711	10973711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataaataaagacacacgtaCgcataactcacctttcattc	4	11	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10973711	A	A	10973711	1	1	74	0	1	0	0	0	0	0	0	0	16554	551	19	3		3	TPTE	21	10973711	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3679	10973711	37156184	1349	81803											
LIPI	149998	broad.mit.edu	37	chr21	15481394	15481394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaatattatacctgcaaaGtggtggtctgagaaagagaa	10	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15481394	T	T	15481394	3	4	74	1	0	0	0	0	1	0	0	0	8898	1029	36	3	83	3	LIPI	21	15481394	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	4507683	15481394	32648501	1350	81804											
LIPI	149998	broad.mit.edu	37	chr21	15554225	15554225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctcatcaagtccacagaGctccttacattgcatacttc	5	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15554225	T	T	15554225	1	4	74	0	1	0	0	0	0	0	0	0	8898	986	34	3		3	LIPI	21	15554225	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	72831	15554225	32575670	1351	81805											
NRIP1	8204	broad.mit.edu	37	chr21	16339226	16339226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaataagaactttcatcacCactgctgtcatctgtaaaac	6	10	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16339226	A	A	16339226	3	1	74	1	0	0	0	0	1	0	0	0	10747	594	21	2	2192	2	NRIP1	21	16339226	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	785001	16339226	31790669	1352	81806											
TMPRSS15	5651	broad.mit.edu	37	chr21	19716212	19716212	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatatgagcctggtggccTgagcaaggcaatgttaccca	12	9	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19716212	A	A	19716212	1	1	74	0	1	0	0	0	0	0	0	0	16369	1595	55	5		5	TMPRSS15	21	19716212	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3376986	19716212	28413683	1353	81807											
NCAM2	4685	broad.mit.edu	37	chr21	22804571	22804571	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaagtagcgtcagaaatcTggaaaattgtacgctcccat	9	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22804571	G	G	22804571	3	3	74	1	0	0	0	0	1	0	0	0	10298	1580	55	5	1670	5	NCAM2	21	22804571	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3088359	22804571	25325324	1354	81808											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296687	28296687	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcactattagaatttccttCgtggcagagtagcccatgcc	9	11	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28296687	A	A	28296687	2	1	74	1	0	0	0	0	0	0	0	1	269	871	31	3		3	ADAMTS5	21	28296687	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5492116	28296687	19833208	1355	81809											
ADAMTS5	11096	broad.mit.edu	37	chr21	28337809	28337809	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatgctagcatggctgtacAgcctattggcgatggaggcc	14	10	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28337809	C	C	28337809	3	2	74	1	0	0	0	0	1	0	0	0	269	188	7	5	1922	5	ADAMTS5	21	28337809	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	41122	28337809	19792086	1356	81810											
USP16	10600	broad.mit.edu	37	chr21	30400249	30400249	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccaacatgggaaagaaacgGacaaagggaaaaactgttcc	11	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30400249	A	A	30400249	2	1	74	1	0	0	0	0	0	0	0	1	17173	1161	41	4		4	USP16	21	30400249	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2062440	30400249	17729646	1357	81811											
KRTAP26-1	388818	broad.mit.edu	37	chr21	31692293	31692293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggaggtgagaggaatatGgcgggaggttctgagagatc	19	3	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31692293	A	A	31692293	3	1	74	1	0	0	0	0	1	0	0	0	8615	1348	47	4	575	4	KRTAP26-1	21	31692293	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1292044	31692293	16437602	1358	81812											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744618	31744618	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggactccaagttatatatGctcttagacctgggtgtgtc	10	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31744618	T	T	31744618	1	4	74	0	1	0	0	0	0	0	0	0	8594	1334	46	3		3	KRTAP13-2	21	31744618	5'Flank	SNP	G	TCGA-17-Z045-01A-01W-0746-08	52325	31744618	16385277	1359	81813											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31913884	31913884	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcatgaagccaaaaaatgGtaggtattttctctacattg	9	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31913884	T	T	31913884	1	4	74	0	1	0	0	0	0	0	0	0	8604	1276	44	3		3	KRTAP19-6	21	31913884	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	169266	31913884	16216011	1360	81814											
IFNAR1	3454	broad.mit.edu	37	chr21	34715816	34715816	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgactttatacttttttaaaGaaccaacttatatttgtgtt	4	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34715816	T	T	34715816	1	4	74	0	1	0	0	0	0	0	0	0	7614	957	33	3		3	IFNAR1	21	34715816	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2801932	34715816	13414079	1361	81815											
SETD4	54093	broad.mit.edu	37	chr21	37431390	37431390	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcaagtgcttttgtaCatgaaacgtttatactgtga	7	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37431390	T	T	37431390	1	4	74	0	1	0	0	0	0	0	0	0	14246	493	17	4		4	SETD4	21	37431390	5'UTR	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2715574	37431390	10698505	1362	81816											
DOPEY2	9980	broad.mit.edu	37	chr21	37597896	37597896	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgttacagcgtgaggaacagCgtcagccctccccccacggt	11	16	1	1	rs139220161	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37597896	G	G	37597896	3	3	74	1	0	0	0	0	1	0	0	0	4748	767	27	4	1446	4	DOPEY2	21	37597896	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	166506	37597896	10531999	1363	81817											
SIM2	6493	broad.mit.edu	37	chr21	38115668	38115668	+	Intron	DEL	G	-	-													gcgcctgctggacatgactcGgcccactctcgccttccagg					rs140462434	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38115668	-	-	38115668	6	5	74	0	1	1	0	1	0	0	0	0	14437	1131	39	0		0	SIM2	21	38115668	Intron	DEL	G	TCGA-17-Z045-01A-01W-0746-08	517772	38115668	10014227	1364	81818											
PCP4	5121	broad.mit.edu	37	chr21	41239534	41239534	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagggacttagcagtgctGaggaacaaattaatcctgta	12	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41239534	A	A	41239534	1	1	74	0	1	0	0	0	0	0	0	0	11692	1305	45	4		4	PCP4	21	41239534	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3123866	41239534	6890361	1365	81819											
PRDM15	63977	broad.mit.edu	37	chr21	43259796	43259796	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggacactttgggttttctCccccttcgaggctttttctt	8	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43259796	A	A	43259796	2	1	74	1	0	0	0	0	0	0	0	1	12562	842	30	3		3	PRDM15	21	43259796	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2020262	43259796	4870099	1366	81820											
UBASH3A	53347	broad.mit.edu	37	chr21	43855156	43855156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgagccctagctacacaCcctttgatacagtgttagct	8	13	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43855156	A	A	43855156	1	1	74	0	1	0	0	0	0	0	0	0	16965	522	18	3		3	UBASH3A	21	43855156	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	595360	43855156	4274739	1367	81821											
TRPM2	7226	broad.mit.edu	37	chr21	45811202	45811202	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcactcatctccaacaaGcctgagtttgtgaagctctt	8	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45811202	A	A	45811202	2	1	74	1	0	0	0	0	0	0	0	1	16711	962	34	4		4	TRPM2	21	45811202	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1956046	45811202	2318693	1368	81822											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45994747	45994748	+	Missense_Mutation	DNP	CC	AA	AA													ctgccgccccgtgtgcaggcCcgcctgctgcgtgcccgtcc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	45994748	AA	AA	45994747	3	1	74	1	0	0	0	0	1	0	0	0	8582	623	22	2	1114	2	KRTAP10-4	21	45994747	Missense_Mutation	DNP	CC	TCGA-17-Z045-01A-01W-0746-08	183545	45994747	2135148	1369	81823											
DGCR14	8220	broad.mit.edu	37	chr22	19122551	19122551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccaccctcgcacttcccCaccagccaggcggcccctca	8	22	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19122551	A	A	19122551	1	1	74	0	1	0	0	0	0	0	0	0	4500	609	21	2		2	DGCR14	22	19122551	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08		19122551	32182015	1370	81824											
LZTR1	8216	broad.mit.edu	37	chr22	21341877	21341877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgtttgtctttggtaaGcagcctcttgcctcccaggg	11	11	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21341877	T	T	21341877	1	4	74	0	1	0	0	0	0	0	0	0	9225	986	34	3		3	LZTR1	22	21341877	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2219326	21341877	29962689	1371	81825											
MYO18B	84700	broad.mit.edu	37	chr22	26173729	26173729	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtggggatggcaggcagTgtggatggcagggtctcagg	21	6	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26173729	A	A	26173729	3	1	74	1	0	0	0	0	1	0	0	0	10160	1693	59	5	2075	5	MYO18B	22	26173729	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4831852	26173729	25130837	1372	81826											
HMGXB4	10042	broad.mit.edu	37	chr22	35659895	35659895	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggaatgggcaacaggtggGataaacacatcgctggttct	14	7	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35659895	T	T	35659895	1	4	74	0	1	0	0	0	0	0	0	0	7306	1189	41	3		3	HMGXB4	22	35659895	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	9486166	35659895	15644671	1373	81827											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45204300	45204300	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctggctccagagcgcatAcaaggagttcgataggaagt	15	8	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45204300	G	G	45204300	1	3	74	0	1	0	0	0	0	0	0	0	12707	391	14	5		5	PRR5-ARHGAP8	22	45204300	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	9544405	45204300	6100266	1374	81828											
NCAPH2	29781	broad.mit.edu	37	chr22	50955911	50955911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttcatctctggaaagaGgtgagttctgcagccactca	10	9	4	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50955911	T	T	50955911	3	4	74	1	0	0	0	0	1	0	0	0	10305	1014	35	2	276	2	NCAPH2	22	50955911	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5751611	50955911	348655	1375	81829											
STS	412	broad.mit.edu	37	chrX	7251960	7251961	+	Intron	DNP	GG	TT	TT													agctccctcatgctcttattGgttcagaaggacatttgaga							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	7251961	TT	TT	7251960	1	4	74	0	1	0	0	0	0	0	0	0	15450	1363	47	2		2	STS	23	7251960	Intron	DNP	GG	TCGA-17-Z045-01A-01W-0746-08		7251960	148018600	1376	81830											
PNPLA4	8228	broad.mit.edu	37	chrX	7894005	7894005	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttttctggtgctgttagCagaacagaagcaaccaacga	9	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7894005	A	A	7894005	2	1	74	1	0	0	0	0	0	0	0	1	12262	697	25	3		3	PNPLA4	23	7894005	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	642045	7894005	147376555	1377	81831											
FRMPD4	9758	broad.mit.edu	37	chrX	12739624	12739624	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctcagtacaagcaactgTtatccattgagtccagacag	7	10	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12739624	A	A	12739624	1	1	74	0	1	0	0	0	0	0	0	0	6119	1740	60	5		5	FRMPD4	23	12739624	3'UTR	SNP	T	TCGA-17-Z045-01A-01W-0746-08	4845619	12739624	142530936	1378	81832											
TLR7	51284	broad.mit.edu	37	chrX	12905189	12905189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctttctttcctcaaatGcctgaatctgtcaggaaatc	6	11	5	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12905189	T	T	12905189	3	4	74	1	0	0	0	0	1	0	0	0	16079	1319	46	3	1568	3	TLR7	23	12905189	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	165565	12905189	142365371	1379	81833											
FANCB	2187	broad.mit.edu	37	chrX	14883644	14883644	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctagtcattccacaatatcAagtctttgtgctgatctaat	6	9	4	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14883644	T	T	14883644	1	4	74	0	1	0	0	0	0	0	0	0	5720	145	5	5		5	FANCB	23	14883644	5'UTR	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1978455	14883644	140386916	1380	81834											
PIGA	5277	broad.mit.edu	37	chrX	15339934	15339935	+	Intron	INS	-	A	A													tgtgagcactttcacccatcINSaccccatcacctgtcccatg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15339935	A	A	15339934	6	5	74	0	1	1	1	0	0	0	0	0	11979	841	29	0		0	PIGA	23	15339934	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	456290	15339934	139930626	1381	81835											
CA5B	11238	broad.mit.edu	37	chrX	15794885	15794885	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccttcctgcctgatgcctAcctgcccagattactggacc	7	17	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15794885	G	G	15794885	3	3	74	1	0	0	0	0	1	0	0	0	2546	391	14	5	689	5	CA5B	23	15794885	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	454951	15794885	139475675	1382	81836											
CTPS2	56474	broad.mit.edu	37	chrX	16656918	16656918	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatgtaatggagagaacTgtggattcaaaagaactgag	11	4	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16656918	C	C	16656918	1	2	74	0	1	0	0	0	0	0	0	0	4057	1595	55	5		5	CTPS2	23	16656918	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	862033	16656918	138613642	1383	81837											
CNKSR2	22866	broad.mit.edu	37	chrX	21549933	21549933	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcggccatttactaccctaaCatgtttctacatcttctcct	3	14	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21549933	G	G	21549933	1	3	74	0	1	0	0	0	0	0	0	0	3639	493	17	4		4	CNKSR2	23	21549933	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4893015	21549933	133720627	1384	81838											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998033	27998033	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtccccctccatgaactgGatgatctgggaggatgattt	11	10	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27998033	T	T	27998033	2	4	74	1	0	0	0	0	0	0	0	1	4310	1164	41	3		3	DCAF8L1	23	27998033	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	6448100	27998033	127272527	1385	81839											
MAGEB1	4112	broad.mit.edu	37	chrX	30269348	30269348	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccccgtaagttcatcacCcaagatctggtgcaggaaaa	9	11	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30269348	A	A	30269348	2	1	74	1	0	0	0	0	0	0	0	1	9264	610	22	2		2	MAGEB1	23	30269348	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2271315	30269348	125001212	1386	81840											
DMD	1756	broad.mit.edu	37	chrX	31854905	31854905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaatctcttccacatccGgttgtttagcttgaactgct	6	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31854905	T	T	31854905	3	4	74	1	0	0	0	0	1	0	0	0	4620	1116	39	1	4199	1	DMD	23	31854905	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1585557	31854905	123415655	1387	81841											
DMD	1756	broad.mit.edu	37	chrX	32382752	32382752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctgattcatccaaaaGtgtgtcagcctgaatgatcc	7	10	3	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32382752	T	T	32382752	3	4	74	1	0	0	0	0	1	0	0	0	4620	1029	36	3	6280	3	DMD	23	32382752	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	527847	32382752	122887808	1388	81842											
LANCL3	347404	broad.mit.edu	37	chrX	37515063	37515063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactatggaaccgaatacttGggtaagtgaaggtgtttgca	12	5	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37515063	T	T	37515063	3	4	74	1	0	0	0	0	1	0	0	0	8694	1362	47	2	702	2	LANCL3	23	37515063	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	5132311	37515063	117755497	1389	81843											
HDAC6	10013	broad.mit.edu	37	chrX	48682734	48682734	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtagacccttcgacacgtGcacactcaccccccacacac	7	19	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48682734	A	A	48682734	1	1	74	0	1	0	0	0	0	0	0	0	7078	1334	46	4		4	HDAC6	23	48682734	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	11167671	48682734	106587826	1390	81844											
WNK3	65267	broad.mit.edu	37	chrX	54320956	54320957	+	Intron	INS	-	T	T													agaatataattgcacatgcgINStttgcttttacaagctgtaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54320957	T	T	54320956	6	5	74	0	1	1	1	0	0	0	0	0	17506	1160	40	0		0	WNK3	23	54320956	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	5638222	54320956	100949604	1391	81845											
PAGE2	203569	broad.mit.edu	37	chrX	55116411	55116411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatataactaagttcttaCacactttttccaaataacaa	1	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55116411	A	A	55116411	1	1	74	0	1	0	0	0	0	0	0	0	11484	493	17	3		3	PAGE2	23	55116411	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	795455	55116411	100154149	1392	81846											
PAGE5	90737	broad.mit.edu	37	chrX	55248955	55248955	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagacttctgaaataattagCctacaggtttttatttcaca	5	8	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55248955	G	G	55248955	1	3	74	0	1	0	0	0	0	0	0	0	11487	754	26	4		4	PAGE5	23	55248955	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	132544	55248955	100021605	1393	81847											
FAM123B	139285	broad.mit.edu	37	chrX	63409901	63409901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtgctcaggccggaccCtgggcagctgaggaatgcca	18	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63409901	A	A	63409901	3	1	74	1	0	0	0	0	1	0	0	0	5469	681	24	2	145	2	FAM123B	23	63409901	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	8160946	63409901	91860659	1394	81848											
HEPH	9843	broad.mit.edu	37	chrX	65427230	65427230	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcctgaactccacctaggGaagctatgttataccaggat	9	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65427230	T	T	65427230	1	4	74	0	1	0	0	0	0	0	0	0	7121	1189	41	3		3	HEPH	23	65427230	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2017329	65427230	89843330	1395	81849											
OPHN1	4983	broad.mit.edu	37	chrX	67283822	67283822	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttggtccctccatcctGcagcctagacaccaacttcc	6	17	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67283822	A	A	67283822	4	1	74	1	0	0	0	0	0	1	0	0	10969	1328	46	4	392	4	OPHN1	23	67283822	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1856592	67283822	87986738	1396	81850											
OPHN1	4983	broad.mit.edu	37	chrX	67290529	67290529	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatgcagcccctagaagTggctttcaccacctcatcca	8	14	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67290529	A	A	67290529	1	1	74	0	1	0	0	0	0	0	0	0	10969	1711	59	5		5	OPHN1	23	67290529	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	6707	67290529	87980031	1397	81851											
SLC7A3	84889	broad.mit.edu	37	chrX	70147645	70147645	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaacaaacatttgatactGacctggtagaaagagcacag	9	7	0	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70147645	T	T	70147645	1	4	74	0	1	0	0	0	0	0	0	0	14812	1305	45	3		3	SLC7A3	23	70147645	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2857116	70147645	85122915	1398	81852											
IL2RG	3561	broad.mit.edu	37	chrX	70328489	70328489	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagagaaggctgataatcaAtcccatggagccaacagaga	10	9	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70328489	G	G	70328489	2	3	74	1	0	0	0	0	0	0	0	1	7758	98	4	5		5	IL2RG	23	70328489	Silent	SNP	A	TCGA-17-Z045-01A-01W-0746-08	180844	70328489	84942071	1399	81853											
ZCCHC13	389874	broad.mit.edu	37	chrX	73524478	73524478	+	Frame_Shift_Del	DEL	C	-	-													gcacattcagaaagactgcgCccaggtcaagtgttaccgat							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73524478	-	-	73524478	7	5	74	1	0	1	0	1	0	0	0	0	17708	739	26	0	379	0	ZCCHC13	23	73524478	Frame_Shift_Del	DEL	C	TCGA-17-Z045-01A-01W-0746-08	3195989	73524478	81746082	1400	81854											
UPRT	139596	broad.mit.edu	37	chrX	74519637	74519637	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attggaaagatcctgattcaGagtgatgaggagacacaaag	12	5	1	6			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74519637	T	T	74519637	3	4	74	1	0	0	0	0	1	0	0	0	17140	933	33	3	648	3	UPRT	23	74519637	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	995159	74519637	80750923	1401	81855											
ZDHHC15	158866	broad.mit.edu	37	chrX	74598896	74598896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttttctagttcttctcCcaagccgccttcttagcagt	5	13	5	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74598896	A	A	74598896	1	1	74	0	1	0	0	0	0	0	0	0	17731	638	22	2		2	ZDHHC15	23	74598896	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	79259	74598896	80671664	1402	81856											
ITM2A	9452	broad.mit.edu	37	chrX	78618572	78618572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggaagttaggctctcctCcacgaagggaatttgcagga	13	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78618572	A	A	78618572	3	1	74	1	0	0	0	0	1	0	0	0	7982	855	30	3	499	3	ITM2A	23	78618572	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4019676	78618572	76651988	1403	81857											
FAM46D	169966	broad.mit.edu	37	chrX	79698089	79698089	+	Silent	SNP	G	A	A													tgggatcaagttataacactGgatcaagtgttagatgaagt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79698089	A	A	79698089	2	1	74	1	0	0	0	0	0	0	0	1	5619	1335	47	4		4	FAM46D	23	79698089	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1079517	79698089	75572471	1404	81858	374	2									
FAM46D	169966	broad.mit.edu	37	chrX	79698091	79698091	+	Missense_Mutation	SNP	A	T	T													ggatcaagttataacactggAtcaagtgttagatgaagtaa							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79698091	T	T	79698091	3	4	74	1	0	0	0	0	1	0	0	0	5619	333	12	5	55	5	FAM46D	23	79698091	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2	79698091	75572469	1405	81859	374	2									
HMGN5	79366	broad.mit.edu	37	chrX	80438961	80438961	+	Intron	DEL	T	-	-													gctccaatcccagctatggcTtaaaaggggcccagatgcag					rs112011773		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80438961	-	-	80438961	6	5	74	0	1	1	0	1	0	0	0	0	7305	1624	56	0		0	HMGN5	23	80438961	Intron	DEL	T	TCGA-17-Z045-01A-01W-0746-08	740870	80438961	74831599	1406	81860											
CHM	1121	broad.mit.edu	37	chrX	85212932	85212932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagcattcgcttttctaCcatagtaagttgtttgctat	6	8	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85212932	A	A	85212932	3	1	74	1	0	0	0	0	1	0	0	0	3381	507	18	3	1129	3	CHM	23	85212932	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4773971	85212932	70057628	1407	81861											
PCDH11X	27328	broad.mit.edu	37	chrX	91368385	91368385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgtccacctcgactgattCtgtggatatagttttccctg	8	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91368385	A	A	91368385	1	1	74	0	1	0	0	0	0	0	0	0	11602	928	32	3		3	PCDH11X	23	91368385	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	6155453	91368385	63902175	1408	81862											
TSPAN6	7105	broad.mit.edu	37	chrX	99890233	99890233	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcgaccaaaaaaacgagaGtcagaaacattgcatactgc	8	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99890233	T	T	99890233	3	4	74	1	0	0	0	0	1	0	0	0	16776	1029	36	3	464	3	TSPAN6	23	99890233	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	8521848	99890233	55380327	1409	81863											
SYTL4	94121	broad.mit.edu	37	chrX	99933578	99933578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttacgtttactggccttgttCctcatgggaaggaggtatct	11	8	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99933578	A	A	99933578	3	1	74	1	0	0	0	0	1	0	0	0	15604	854	30	3	346	3	SYTL4	23	99933578	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	43345	99933578	55336982	1410	81864											
SYTL4	94121	broad.mit.edu	37	chrX	99956282	99956282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtaagcaaagcgattcaCtttctggtcataaaaccagt	9	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99956282	A	A	99956282	3	1	74	1	0	0	0	0	1	0	0	0	15604	565	20	3	1701	3	SYTL4	23	99956282	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	22704	99956282	55314278	1411	81865											
XKRX	402415	broad.mit.edu	37	chrX	100183300	100183300	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaactctgtccattgtcgaGgttctttctgaatgttgtgg	10	7	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100183300	T	T	100183300	1	4	74	0	1	0	0	0	0	0	0	0	17566	1015	35	2		2	XKRX	23	100183300	5'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	227018	100183300	55087260	1412	81866											
TRMT2B	79979	broad.mit.edu	37	chrX	100274488	100274488	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagccaagggctctgccatCttccctttggatctagcatc	10	13	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100274488	G	G	100274488	1	3	74	0	1	0	0	0	0	0	0	0	16691	928	32	4		4	TRMT2B	23	100274488	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	91188	100274488	54996072	1413	81867											
NXF5	55998	broad.mit.edu	37	chrX	101092099	101092099	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagaaaggttaagtaaccAgcacaagttcacagagtaag	9	7	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101092099	T	T	101092099	1	4	74	0	1	0	0	0	0	0	0	0	10881	203	7	5		5	NXF5	23	101092099	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	817611	101092099	54178461	1414	81868											
BEX1	55859	broad.mit.edu	37	chrX	102318116	102318116	+	Frame_Shift_Del	DEL	A	-	-													agggccaagggctcccctttAttagcaacttgctccttttc							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102318116	-	-	102318116	7	5	74	1	0	1	0	1	0	0	0	0	1416	446	16	0	294	0	BEX1	23	102318116	Frame_Shift_Del	DEL	A	TCGA-17-Z045-01A-01W-0746-08	1226017	102318116	52952444	1415	81869											
NXF3	56000	broad.mit.edu	37	chrX	102337745	102337745	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccatgcactttctaggattCgatgccatcttagtatcacg	8	11	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102337745	A	A	102337745	2	1	74	1	0	0	0	0	0	0	0	1	10880	871	31	3		3	NXF3	23	102337745	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	19629	102337745	52932815	1416	81870											
TCEAL5	340543	broad.mit.edu	37	chrX	102529198	102529198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcggcggcccgcggctgGctctctggcttggcctggga	16	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102529198	T	T	102529198	3	4	74	1	0	0	0	0	1	0	0	0	15796	1194	42	3	330	3	TCEAL5	23	102529198	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	191453	102529198	52741362	1417	81871											
TBC1D8B	54885	broad.mit.edu	37	chrX	106093413	106093413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattgaaagtgcagtgaatGtggtggactgtttcttctat	11	5	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106093413	T	T	106093413	3	4	74	1	0	0	0	0	1	0	0	0	15748	1377	48	3	2108	3	TBC1D8B	23	106093413	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	3564215	106093413	49177147	1418	81872											
TBC1D8B	54885	broad.mit.edu	37	chrX	106109130	106109130	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagattgactgccagcagttCagagcgttgtatcacttgtt	10	9	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106109130	G	G	106109130	3	3	74	1	0	0	0	0	1	0	0	0	15748	825	29	4	2657	4	TBC1D8B	23	106109130	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	15717	106109130	49161430	1419	81873											
MID2	11043	broad.mit.edu	37	chrX	107159115	107159115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagatatgatattttcaCtaaataaatcaagccttaca	5	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107159115	A	A	107159115	1	1	74	0	1	0	0	0	0	0	0	0	9671	580	20	3		3	MID2	23	107159115	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1049985	107159115	48111445	1420	81874											
COL4A6	1288	broad.mit.edu	37	chrX	107417577	107417577	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggagaaggggctgagaagTaagctgggatcagagaggtg	20	3	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107417577	A	A	107417577	1	1	74	0	1	0	0	0	0	0	0	0	3727	1653	57	5		5	COL4A6	23	107417577	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	258462	107417577	47852983	1421	81875											
COL4A6	1288	broad.mit.edu	37	chrX	107439492	107439492	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcccagaagacaatgatacAtgagagcaaggagatgaata	11	6	0	6			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107439492	T	T	107439492	1	4	74	0	1	0	0	0	0	0	0	0	3727	232	8	5		5	COL4A6	23	107439492	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	21915	107439492	47831068	1422	81876											
COL4A5	1287	broad.mit.edu	37	chrX	107827692	107827692	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtgaattttactaacctAttttacaattgcattgaaca	4	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107827692	G	G	107827692	1	3	74	0	1	0	0	0	0	0	0	0	3726	464	16	5		5	COL4A5	23	107827692	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	388200	107827692	47442868	1423	81877											
COL4A5	1287	broad.mit.edu	37	chrX	107898793	107898793	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttatattttatttcccaatCagatactgactagcaacata	3	9	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107898793	A	A	107898793	1	1	74	0	1	0	0	0	0	0	0	0	3726	841	29	3		3	COL4A5	23	107898793	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	71101	107898793	47371767	1424	81878											
GUCY2F	2986	broad.mit.edu	37	chrX	108697122	108697122	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacaattatcttgagccctGgtcgccctagagcgatctca	8	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108697122	A	A	108697122	1	1	74	0	1	0	0	0	0	0	0	0	6963	1363	47	4		4	GUCY2F	23	108697122	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	798329	108697122	46573438	1425	81879											
TMEM164	84187	broad.mit.edu	37	chrX	109414968	109414969	+	Intron	INS	-	T	T													atgactgtttctttcatcccINStggggaggcaaggatgcctt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109414969	T	T	109414968	6	5	74	0	1	1	1	0	0	0	0	0	16202	696	24	0		0	TMEM164	23	109414968	Intron	INS	-	TCGA-17-Z045-01A-01W-0746-08	717846	109414968	45855592	1426	81880											
RGAG1	57529	broad.mit.edu	37	chrX	109696888	109696888	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataccgtgtctggaaggatgGccacagcgccaattagagcc	12	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109696888	A	A	109696888	3	1	74	1	0	0	0	0	1	0	0	0	13382	1203	42	4	3045	4	RGAG1	23	109696888	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	281920	109696888	45573672	1427	81881											
PAK3	5063	broad.mit.edu	37	chrX	110345258	110345258	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggattaggaccctgttcattCtggtctgtaataaataggtg	11	6	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110345258	G	G	110345258	1	3	74	0	1	0	0	0	0	0	0	0	11496	928	32	4		4	PAK3	23	110345258	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	648370	110345258	44925302	1428	81882											
PAK3	5063	broad.mit.edu	37	chrX	110407025	110407025	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccatttaaaatgggaattGatcctttggaagttttaatc	8	5	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110407025	T	T	110407025	1	4	74	0	1	0	0	0	0	0	0	0	11496	1305	45	3		3	PAK3	23	110407025	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	61767	110407025	44863535	1429	81883											
CAPN6	827	broad.mit.edu	37	chrX	110494829	110494829	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcccaaggggtttctcaggcGaaccatatacaccttctcag	8	13	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110494829	C	C	110494829	3	2	74	1	0	0	0	0	1	0	0	0	2656	1058	37	4	1116	4	CAPN6	23	110494829	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	87804	110494829	44775731	1430	81884											
TRPC5	7224	broad.mit.edu	37	chrX	111090460	111090460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattggcaaaagctagtaGtaccaggcagtagataaaga	10	7	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111090460	T	T	111090460	3	4	74	1	0	0	0	0	1	0	0	0	16707	1020	36	3	1363	3	TRPC5	23	111090460	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	595631	111090460	44180100	1431	81885											
AMOT	154796	broad.mit.edu	37	chrX	112022251	112022251	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtctggattgcaggtcaaaCttggtatagacaaacgatgt	11	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112022251	G	G	112022251	3	3	74	1	0	0	0	0	1	0	0	0	582	565	20	4	131	4	AMOT	23	112022251	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	931791	112022251	43248309	1432	81886											
AMOT	154796	broad.mit.edu	37	chrX	112054567	112054567	+	Frame_Shift_Del	DEL	A	-	-													tagggcctctcttttggaggAtgacttcacgaggttctcat							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112054567	-	-	112054567	7	5	74	1	0	1	0	1	0	0	0	0	582	333	12	0	1843	0	AMOT	23	112054567	Frame_Shift_Del	DEL	A	TCGA-17-Z045-01A-01W-0746-08	32316	112054567	43215993	1433	81887											
DOCK11	139818	broad.mit.edu	37	chrX	117775175	117775175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacaacaactgaagcagaCattttccaccaggcacttct	5	13	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117775175	A	A	117775175	3	1	74	1	0	0	0	0	1	0	0	0	4726	477	17	3	4321	3	DOCK11	23	117775175	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	5720608	117775175	37495385	1434	81888											
SLC25A5	292	broad.mit.edu	37	chrX	118604335	118604335	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctctttcctattcccaGgaatgcttccggatcccaag	7	14	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118604335	T	T	118604335	5	4	74	1	0	0	0	0	0	0	1	0	14626	1014	35	2	608	2	SLC25A5	23	118604335	Splice_Site	SNP	G	TCGA-17-Z045-01A-01W-0746-08	829160	118604335	36666225	1435	81889											
NKAP	79576	broad.mit.edu	37	chrX	119077253	119077253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtcgctcccgtaggggcGcgagtagctgccgtaataga	14	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119077253	T	T	119077253	3	4	74	1	0	0	0	0	1	0	0	0	10534	1087	38	3	967	3	NKAP	23	119077253	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	472918	119077253	36193307	1436	81890											
FAM70A	55026	broad.mit.edu	37	chrX	119402040	119402040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgaatttagggagagaaCaagagagcatgagtgagaac	13	3	0	5			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119402040	A	A	119402040	1	1	74	0	1	0	0	0	0	0	0	0	5656	493	17	3		3	FAM70A	23	119402040	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	324787	119402040	35868520	1437	81891											
ATP1B4	23439	broad.mit.edu	37	chrX	119509380	119509380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctggaggacccaacttttgGatactctactggacagccct	9	12	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119509380	T	T	119509380	3	4	74	1	0	0	0	0	1	0	0	0	1139	1174	41	3	734	3	ATP1B4	23	119509380	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	107340	119509380	35761180	1438	81892											
C1GALT1C1	29071	broad.mit.edu	37	chrX	119760088	119760088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcattgtcagaaccatttgGaggtaagaaaaccaatgcat	9	7	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119760088	T	T	119760088	3	4	74	1	0	0	0	0	1	0	0	0	1973	1174	41	3	26	3	C1GALT1C1	23	119760088	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	250708	119760088	35510472	1439	81893											
GRIA3	2892	broad.mit.edu	37	chrX	122381510	122381510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaggcattatatagggaGggaagagacagaggacaatg	14	4	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122381510	T	T	122381510	1	4	74	0	1	0	0	0	0	0	0	0	6835	1015	35	2		2	GRIA3	23	122381510	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	2621422	122381510	32889050	1440	81894											
GRIA3	2892	broad.mit.edu	37	chrX	122562114	122562114	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttatcaaaggagagcatCttaaatactgggctgcttgg	11	6	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122562114	A	A	122562114	1	1	74	0	1	0	0	0	0	0	0	0	6835	928	32	3		3	GRIA3	23	122562114	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	180604	122562114	32708446	1441	81895											
STAG2	10735	broad.mit.edu	37	chrX	123176531	123176531	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgttttgataacttatgCatgtttatcttgacttattt	6	4	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123176531	T	T	123176531	1	4	74	0	1	0	0	0	0	0	0	0	15361	725	25	4		4	STAG2	23	123176531	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	614417	123176531	32094029	1442	81896											
SH2D1A	4068	broad.mit.edu	37	chrX	123504058	123504058	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtacataaaagatatttccgGaaaataaaaaatctcatttc	4	6	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123504058	A	A	123504058	2	1	74	1	0	0	0	0	0	0	0	1	14343	1161	41	4		4	SH2D1A	23	123504058	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	327527	123504058	31766502	1443	81897											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686417	125686417	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggccccacccgcctacctCccgaaccttcagatagtgcg	10	18	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125686417	A	A	125686417	4	1	74	1	0	0	0	0	0	1	0	0	4297	864	30	3	1220	3	DCAF12L1	23	125686417	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2182359	125686417	29584143	1444	81898											
XPNPEP2	7512	broad.mit.edu	37	chrX	128875919	128875919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgctatccagttcagcCtgatttcctatgaaatgtga	10	8	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128875919	A	A	128875919	1	1	74	0	1	0	0	0	0	0	0	0	17570	696	24	2		2	XPNPEP2	23	128875919	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	3189502	128875919	26394641	1445	81899											
XPNPEP2	7512	broad.mit.edu	37	chrX	128880503	128880503	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggaccatcagacagaaCccctggctggagagcctggg	15	11	1	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128880503	G	G	128880503	1	3	74	0	1	0	0	0	0	0	0	0	17570	522	18	4		4	XPNPEP2	23	128880503	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	4584	128880503	26390057	1446	81900											
XPNPEP2	7512	broad.mit.edu	37	chrX	128894414	128894414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccctgcaccgtgtatcCataggccaagcagctggata	12	12	0	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128894414	A	A	128894414	1	1	74	0	1	0	0	0	0	0	0	0	17570	609	21	2		2	XPNPEP2	23	128894414	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	13911	128894414	26376146	1447	81901											
BCORL1	63035	broad.mit.edu	37	chrX	129146801	129146801	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaaattggctggctgccctCtgcgtcttccgagacctggt	11	13	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129146801	T	T	129146801	1	4	74	0	1	0	0	0	0	0	0	0	1392	928	32	4		4	BCORL1	23	129146801	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	252387	129146801	26123759	1448	81902											
BCORL1	63035	broad.mit.edu	37	chrX	129168530	129168530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaagtcccgaagtgccaGctcagaggaggcctcagagt	12	12	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129168530	T	T	129168530	1	4	74	0	1	0	0	0	0	0	0	0	1392	971	34	3		3	BCORL1	23	129168530	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	21729	129168530	26102030	1449	81903											
ELF4	2000	broad.mit.edu	37	chrX	129206057	129206057	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagactaacggatgaggcCaggttttacagaagggaggc	16	7	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129206057	T	T	129206057	1	4	74	0	1	0	0	0	0	0	0	0	5098	609	21	4		4	ELF4	23	129206057	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	37527	129206057	26064503	1450	81904											
ENOX2	10495	broad.mit.edu	37	chrX	129799674	129799674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttttgtgaagtggtcCcatgccttctgcttggaggc	14	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129799674	A	A	129799674	3	1	74	1	0	0	0	0	1	0	0	0	5169	624	22	2	816	2	ENOX2	23	129799674	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	593617	129799674	25470886	1451	81905											
ENOX2	10495	broad.mit.edu	37	chrX	129883714	129883714	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatttgtagtagtgatggTggggcctttgacggtaagag	16	4	0	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129883714	C	C	129883714	1	2	74	0	1	0	0	0	0	0	0	0	5169	1711	59	5		5	ENOX2	23	129883714	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	84040	129883714	25386846	1452	81906											
ENOX2	10495	broad.mit.edu	37	chrX	130008612	130008612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctaaaaggatgaaatgcCacaaagcctatttgtaacat	6	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130008612	A	A	130008612	1	1	74	0	1	0	0	0	0	0	0	0	5169	609	21	2		2	ENOX2	23	130008612	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	124898	130008612	25261948	1453	81907											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217955	130217955	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgtcgagtgagttaaacCctccaggtttcaggcagggg	16	9	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130217955	A	A	130217955	1	1	74	0	1	0	0	0	0	0	0	0	885	638	22	2		2	ARHGAP36	23	130217955	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	209343	130217955	25052605	1454	81908											
IGSF1	3547	broad.mit.edu	37	chrX	130412615	130412615	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccttcagcaacacaaactCcttagttgagccagaagggc	8	12	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130412615	A	A	130412615	4	1	74	1	0	0	0	0	0	1	0	0	7666	864	30	3	2185	3	IGSF1	23	130412615	Nonsense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	194660	130412615	24857945	1455	81909											
USP26	83844	broad.mit.edu	37	chrX	132161731	132161731	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttcttgtgctgattttctGataactctccgcaagtaagt	7	9	4	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132161731	C	C	132161731	4	2	74	1	0	0	0	0	0	1	0	0	17183	1294	45	4	2226	4	USP26	23	132161731	Nonsense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1749116	132161731	23108829	1456	81910											
GPC4	2239	broad.mit.edu	37	chrX	132439773	132439773	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagttctttgtcattaaaCacggcccttcctgccaaaac	5	13	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132439773	T	T	132439773	1	4	74	0	1	0	0	0	0	0	0	0	6665	493	17	4		4	GPC4	23	132439773	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	278042	132439773	22830787	1457	81911											
HPRT1	3251	broad.mit.edu	37	chrX	133632513	133632513	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttaaccatctttaacctAaaagagttttatgtgaaatg	5	6	1	2	rs138936911	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133632513	G	G	133632513	1	3	74	0	1	0	0	0	0	0	0	0	7405	377	13	5		5	HPRT1	23	133632513	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	1192740	133632513	21638047	1458	81912											
PLAC1	10761	broad.mit.edu	37	chrX	133700794	133700794	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcacaaaaaaacacaagaGgcaagtcatcttattttcta	6	8	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133700794	A	A	133700794	1	1	74	0	1	0	0	0	0	0	0	0	12107	1015	35	4		4	PLAC1	23	133700794	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	68281	133700794	21569766	1459	81913											
CXorf48	54967	broad.mit.edu	37	chrX	134304858	134304858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggactcgggttgcctcgGgttgcctccccatgcacgca	13	14	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134304858	T	T	134304858	1	4	74	0	1	0	0	0	0	0	0	0	4144	1247	43	2		2	CXorf48	23	134304858	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	604064	134304858	20965702	1460	81914											
ZNF449	203523	broad.mit.edu	37	chrX	134482990	134482990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatacaattctactgggcaCtgttggtctagacttgagag	10	8	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134482990	A	A	134482990	1	1	74	0	1	0	0	0	0	0	0	0	18047	580	20	3		3	ZNF449	23	134482990	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	178132	134482990	20787570	1461	81915											
MAP7D3	79649	broad.mit.edu	37	chrX	135304710	135304710	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcctggtttagaatttcaaCaaagtctgacttcaaagctg	7	8	3	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135304710	G	G	135304710	1	3	74	0	1	0	0	0	0	0	0	0	9361	493	17	4		4	MAP7D3	23	135304710	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	821720	135304710	19965850	1462	81916											
GPR112	139378	broad.mit.edu	37	chrX	135428013	135428013	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcaaaggtaccactgcCaatgatgctactacagccag	11	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135428013	T	T	135428013	2	4	74	1	0	0	0	0	0	0	0	1	6694	581	21	4		4	GPR112	23	135428013	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	123303	135428013	19842547	1463	81917											
GPR112	139378	broad.mit.edu	37	chrX	135428501	135428501	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgaatcagcacaaagggtgaCagcttctgtcactgtttcct	9	11	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135428501	G	G	135428501	3	3	74	1	0	0	0	0	1	0	0	0	6694	478	17	4	2646	4	GPR112	23	135428501	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	488	135428501	19842059	1464	81918											
GPR112	139378	broad.mit.edu	37	chrX	135431946	135431946	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaactgtatctaatgccccTcatgttatgacttcctctac	5	13	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135431946	A	A	135431946	2	1	74	1	0	0	0	0	0	0	0	1	6694	1538	54	5		5	GPR112	23	135431946	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	3445	135431946	19838614	1465	81919											
GPR112	139378	broad.mit.edu	37	chrX	135498719	135498719	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaaatgaattccaagtGtatacttgctcgggtgatgg	10	5	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135498719	T	T	135498719	1	4	74	0	1	0	0	0	0	0	0	0	6694	1392	48	3		3	GPR112	23	135498719	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	66773	135498719	19771841	1466	81920											
HTATSF1	27336	broad.mit.edu	37	chrX	135582046	135582046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgaaggaataaggtgaGttttttctttaaggtagtgt	12	2	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135582046	T	T	135582046	1	4	74	0	1	0	0	0	0	0	0	0	7503	1044	36	3		3	HTATSF1	23	135582046	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	83327	135582046	19688514	1467	81921											
HTATSF1	27336	broad.mit.edu	37	chrX	135594124	135594124	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagggcccctatccacTggcagcagctttattctcag	10	12	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135594124	C	C	135594124	2	2	74	1	0	0	0	0	0	0	0	1	7503	1567	55	5		5	HTATSF1	23	135594124	Silent	SNP	T	TCGA-17-Z045-01A-01W-0746-08	12078	135594124	19676436	1468	81922											
CD40LG	959	broad.mit.edu	37	chrX	135732305	135732305	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atataataacttattattctCcatttatgcctgaaagtcct	3	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135732305	A	A	135732305	1	1	74	0	1	0	0	0	0	0	0	0	3046	870	30	3		3	CD40LG	23	135732305	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	138181	135732305	19538255	1469	81923											
GPR101	83550	broad.mit.edu	37	chrX	136113088	136113088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcctccttcttctctgctCcctcttcatcctcattctcc	1	20	6	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136113088	A	A	136113088	3	1	74	1	0	0	0	0	1	0	0	0	6687	855	30	3	783	3	GPR101	23	136113088	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	380783	136113088	19157472	1470	81924											
GPR101	83550	broad.mit.edu	37	chrX	136113576	136113576	+	Frame_Shift_Del	DEL	G	-	-													acagaggtggccaccacccaGggggccacgagcgaaatctg							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136113576	-	-	136113576	7	5	74	1	0	1	0	1	0	0	0	0	6687	987	35	0	1271	0	GPR101	23	136113576	Frame_Shift_Del	DEL	G	TCGA-17-Z045-01A-01W-0746-08	488	136113576	19156984	1471	81925											
FGF13	2258	broad.mit.edu	37	chrX	138190401	138190401	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgtaagaaaatatattccAaaggtcaacagtcccaaatt	5	7	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138190401	T	T	138190401	1	4	74	0	1	0	0	0	0	0	0	0	5899	145	5	5		5	FGF13	23	138190401	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	2076825	138190401	17080159	1472	81926											
MCF2	4168	broad.mit.edu	37	chrX	138670620	138670620	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagattaaaaaaaaagcggGagggaggtggtacacatttc	12	4	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138670620	T	T	138670620	1	4	74	0	1	0	0	0	0	0	0	0	9471	1189	41	3		3	MCF2	23	138670620	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	480219	138670620	16599940	1473	81927											
MCF2	4168	broad.mit.edu	37	chrX	138712044	138712044	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttaattatatggtcactcTgtgagcatatcaaaaactgg	7	7	3	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138712044	A	A	138712044	1	1	74	0	1	0	0	0	0	0	0	0	9471	1595	55	5		5	MCF2	23	138712044	Intron	SNP	T	TCGA-17-Z045-01A-01W-0746-08	41424	138712044	16558516	1474	81928											
ATP11C	286410	broad.mit.edu	37	chrX	138811004	138811004	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtggtttagtgtgttgcgTatcaagtatcctgagatgat	13	4	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138811004	A	A	138811004	1	1	74	0	1	0	0	0	0	0	0	0	1125	1653	57	5		5	ATP11C	23	138811004	3'UTR	SNP	T	TCGA-17-Z045-01A-01W-0746-08	98960	138811004	16459556	1475	81929											
ATP11C	286410	broad.mit.edu	37	chrX	138844233	138844233	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagaataatcgctattccTagctgcttggcgaccttctt	7	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138844233	C	C	138844233	3	2	74	1	0	0	0	0	1	0	0	0	1125	1521	53	5	961	5	ATP11C	23	138844233	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	33229	138844233	16426327	1476	81930											
ATP11C	286410	broad.mit.edu	37	chrX	138845533	138845533	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaccatcacctatcgaCagagttattgggctgccttt	9	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138845533	A	A	138845533	2	1	74	1	0	0	0	0	0	0	0	1	1125	465	17	3		3	ATP11C	23	138845533	Silent	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1300	138845533	16425027	1477	81931											
MAGEC3	139081	broad.mit.edu	37	chrX	140968495	140968495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccattcctggtgcctcaggCtctgcctgccagctgtgccc	11	17	2	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140968495	T	T	140968495	1	4	74	0	1	0	0	0	0	0	0	0	9274	812	28	4		4	MAGEC3	23	140968495	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2122962	140968495	14302065	1478	81932											
MAGEC3	139081	broad.mit.edu	37	chrX	140969697	140969697	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagtagtgctcctccaCgttatgaattcctgtggggt	11	11	0	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140969697	T	T	140969697	1	4	74	0	1	0	0	0	0	0	0	0	9274	551	19	4		4	MAGEC3	23	140969697	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1202	140969697	14300863	1479	81933											
MAGEC2	51438	broad.mit.edu	37	chrX	141291192	141291192	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacttctatcagggcaagGccaaaaagaagctccatgaa	8	12	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291192	T	T	141291192	2	4	74	1	0	0	0	0	0	0	0	1	9273	1190	42	3		3	MAGEC2	23	141291192	Silent	SNP	G	TCGA-17-Z045-01A-01W-0746-08	321495	141291192	13979368	1480	81934											
MAGEC2	51438	broad.mit.edu	37	chrX	141291484	141291484	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaggagctcagaggactcTgggaaggaccctgtggagga	17	8	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141291484	A	A	141291484	3	1	74	1	0	0	0	0	1	0	0	0	9273	1580	55	5	835	5	MAGEC2	23	141291484	Missense_Mutation	SNP	T	TCGA-17-Z045-01A-01W-0746-08	292	141291484	13979076	1481	81935											
SPANXN4	441525	broad.mit.edu	37	chrX	142120673	142120673	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcctcccaggagaatggaCgtaggagagctgggatgtac	14	8	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142120673	T	T	142120673	1	4	74	0	1	0	0	0	0	0	0	0	15109	551	19	4		4	SPANXN4	23	142120673	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	829189	142120673	13149887	1482	81936											
SPANXN3	139067	broad.mit.edu	37	chrX	142596910	142596910	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccttcctgaggtaatacaCaaatattattggatattctg	6	8	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142596910	G	G	142596910	3	3	74	1	0	0	0	0	1	0	0	0	15108	478	17	4	269	4	SPANXN3	23	142596910	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	476237	142596910	12673650	1483	81937											
SPANXN3	139067	broad.mit.edu	37	chrX	142596921	142596921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaatacacaaatattattGgatattctgatgtttttgtc	7	4	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142596921	T	T	142596921	3	4	74	1	0	0	0	0	1	0	0	0	15108	1348	47	2	280	2	SPANXN3	23	142596921	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	11	142596921	12673639	1484	81938											
UBE2NL	389898	broad.mit.edu	37	chrX	142967314	142967314	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcccgttattttcatgtgGtcattgctggggaatcaaag	11	8	3	0	rs146025392		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142967314	T	T	142967314	3	4	74	1	0	0	0	0	1	0	0	0	16993	1261	44	3	114	3	UBE2NL	23	142967314	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	370393	142967314	12303246	1485	81939											
AFF2	2334	broad.mit.edu	37	chrX	148044220	148044220	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagagaagactttatgacAccctacacttcttgtttttc	7	9	1	4			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148044220	T	T	148044220	1	4	74	0	1	0	0	0	0	0	0	0	357	174	6	5		5	AFF2	23	148044220	Intron	SNP	A	TCGA-17-Z045-01A-01W-0746-08	5076906	148044220	7226340	1486	81940											
AFF2	2334	broad.mit.edu	37	chrX	148059468	148059468	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttctcttcaaaggtatgCaatgaggctgaagaactttg	9	7	2	3			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148059468	G	G	148059468	3	3	74	1	0	0	0	0	1	0	0	0	357	710	25	4	3531	4	AFF2	23	148059468	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	15248	148059468	7211092	1487	81941											
PASD1	139135	broad.mit.edu	37	chrX	150794057	150794057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaattcaattttactaaaCgaaactaaaacaagagaaat	4	5	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150794057	A	A	150794057	1	1	74	0	1	0	0	0	0	0	0	0	11565	551	19	3		3	PASD1	23	150794057	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2734589	150794057	4476503	1488	81942											
PASD1	139135	broad.mit.edu	37	chrX	150839355	150839355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattcctaaattctctaacCattttttcaaactttctagt	2	9	3	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150839355	A	A	150839355	1	1	74	0	1	0	0	0	0	0	0	0	11565	609	21	2		2	PASD1	23	150839355	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	45298	150839355	4431205	1489	81943											
MAGEA10	4109	broad.mit.edu	37	chrX	151303812	151303813	+	Missense_Mutation	DNP	GG	TT	TT													gaagggaagcaacgaccgagGgggaggagcaggctatctga							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	151303813	TT	TT	151303812	3	4	74	1	0	0	0	0	1	0	0	0	9252	1232	43	2	832	2	MAGEA10	23	151303812	Missense_Mutation	DNP	GG	TCGA-17-Z045-01A-01W-0746-08	464457	151303812	3966748	1490	81944											
MAGEA10	4109	broad.mit.edu	37	chrX	151304022	151304022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctgtgcaccctcgaggCcctgtgtctcactttgggat	12	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151304022	A	A	151304022	3	1	74	1	0	0	0	0	1	0	0	0	9252	739	26	3	1042	3	MAGEA10	23	151304022	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	210	151304022	3966538	1491	81945											
GABRA3	2556	broad.mit.edu	37	chrX	151336643	151336643	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggagccccggggtttggGtgcctggatgcttcacgggg	20	9	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151336643	A	A	151336643	1	1	74	0	1	0	0	0	0	0	0	0	6222	1276	44	4		4	GABRA3	23	151336643	3'UTR	SNP	G	TCGA-17-Z045-01A-01W-0746-08	32621	151336643	3933917	1492	81946											
GABRQ	55879	broad.mit.edu	37	chrX	151818471	151818471	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctactggttccaggcccCcttaagaaagccccaatgac	7	15	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151818471	T	T	151818471	1	4	74	0	1	0	0	0	0	0	0	0	6235	638	22	4		4	GABRQ	23	151818471	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	481828	151818471	3452089	1493	81947											
L1CAM	3897	broad.mit.edu	37	chrX	153129757	153129757	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttccctggcaggtgatgGcgggcccccggcgcctcacc	14	17	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153129757	C	C	153129757	1	2	74	0	1	0	0	0	0	0	0	0	8660	1218	42	4		4	L1CAM	23	153129757	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	1311286	153129757	2140803	1494	81948											
L1CAM	3897	broad.mit.edu	37	chrX	153132395	153132395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttggcccgccccccagCacaaaccagcatccccagac	6	20	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153132395	A	A	153132395	1	1	74	0	1	0	0	0	0	0	0	0	8660	725	25	3		3	L1CAM	23	153132395	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	2638	153132395	2138165	1495	81949											
L1CAM	3897	broad.mit.edu	37	chrX	153132828	153132828	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgcctcaggtgtgaccAcagtctcagagaccgggctg	12	14	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153132828	G	G	153132828	3	3	74	1	0	0	0	0	1	0	0	0	8660	159	6	5	1705	5	L1CAM	23	153132828	Missense_Mutation	SNP	A	TCGA-17-Z045-01A-01W-0746-08	433	153132828	2137732	1496	81950											
L1CAM	3897	broad.mit.edu	37	chrX	153152423	153152423	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctcccccgcagccctgcAcaggatcgagaaggaaggag	12	14	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153152423	G	G	153152423	1	3	74	0	1	0	0	0	0	0	0	0	8660	174	6	5		5	L1CAM	23	153152423	5'Flank	SNP	A	TCGA-17-Z045-01A-01W-0746-08	19595	153152423	2118137	1497	81951											
EMD	2010	broad.mit.edu	37	chrX	153609453	153609453	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggctgggctgggccaggatCgccaggtcccgctctggggc	19	13	1	0			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153609453	G	G	153609453	3	3	74	1	0	0	0	0	1	0	0	0	5129	884	31	4	683	4	EMD	23	153609453	Missense_Mutation	SNP	C	TCGA-17-Z045-01A-01W-0746-08	457030	153609453	1661107	1498	81952											
RPL10	6134	broad.mit.edu	37	chrX	153627737	153627737	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctgccgaggtgtccctGgtaagtagtggaagagcccc	14	11	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153627737	A	A	153627737	3	1	74	1	0	0	0	0	1	0	0	0	13665	1362	47	4	88	4	RPL10	23	153627737	Missense_Mutation	SNP	G	TCGA-17-Z045-01A-01W-0746-08	18284	153627737	1642823	1499	81953											
FAM50A	9130	broad.mit.edu	37	chrX	153677337	153677337	+	Intron	DEL	G	-	-													gcctgcttcctgctcaccatGggcccagcctccctcaggtt							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153677337	-	-	153677337	6	5	74	0	1	1	0	1	0	0	0	0	5628	1363	47	0		0	FAM50A	23	153677337	Intron	DEL	G	TCGA-17-Z045-01A-01W-0746-08	49600	153677337	1593223	1500	81954											
DKC1	1736	broad.mit.edu	37	chrX	154003006	154003006	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggatgtttcagagccgGggtgggtagagacggcacac	18	8	1	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154003006	C	C	154003006	1	2	74	0	1	0	0	0	0	0	0	0	4582	1247	43	4		4	DKC1	23	154003006	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	325669	154003006	1267554	1501	81955											
MPP1	4354	broad.mit.edu	37	chrX	154020396	154020396	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagagagtaactggtgggcGacaatatgacgggggattac	16	6	0	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154020396	T	T	154020396	1	4	74	0	1	0	0	0	0	0	0	0	9827	1073	37	3		3	MPP1	23	154020396	Intron	SNP	G	TCGA-17-Z045-01A-01W-0746-08	17390	154020396	1250164	1502	81956											
F8	2157	broad.mit.edu	37	chrX	154089946	154089946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttccccgattttttcccCaaccactgctctgagtcagt	6	16	2	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154089946	A	A	154089946	1	1	74	0	1	0	0	0	0	0	0	0	5393	609	21	2		2	F8	23	154089946	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	69550	154089946	1180614	1503	81957											
CLIC2	1193	broad.mit.edu	37	chrX	154508283	154508283	+	Intron	DEL	C	-	-													aagagaacattatggatcttCcctctaaagagaaaagagat							TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154508283	-	-	154508283	6	5	74	0	1	1	0	1	0	0	0	0	3558	870	30	0		0	CLIC2	23	154508283	Intron	DEL	C	TCGA-17-Z045-01A-01W-0746-08	418337	154508283	762277	1504	81958											
CLIC2	1193	broad.mit.edu	37	chrX	154509475	154509475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgctggaaactaaacacCcttagaagtctctcagtaga	8	9	2	2			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154509475	A	A	154509475	1	1	74	0	1	0	0	0	0	0	0	0	3558	638	22	2		2	CLIC2	23	154509475	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	1192	154509475	761085	1505	81959											
CLIC2	1193	broad.mit.edu	37	chrX	154522349	154522349	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagccctgtacgaggccactCtggatcctgagctccctgct	10	16	1	1			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154522349	G	G	154522349	1	3	74	0	1	0	0	0	0	0	0	0	3558	928	32	4		4	CLIC2	23	154522349	Intron	SNP	C	TCGA-17-Z045-01A-01W-0746-08	12874	154522349	748211	1506	81960											
ISG15	9636	broad.mit.edu	37	chr1	949541	949541	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggacagggtcccccttGccagccagggcctgggcccc	14	17	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	949541	A	A	949541	3	1	75	1	0	0	0	0	1	0	0	0	7923	1319	46	4	187	4	ISG15	1	949541	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08		949541	248301080	1	81961											
MMEL1	79258	broad.mit.edu	37	chr1	2528162	2528162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatcatcccacgggccccCacgtcagccttcccaggcct	8	21	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2528162	A	A	2528162	1	1	75	0	1	0	0	0	0	0	0	0	9739	609	21	2		2	MMEL1	1	2528162	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1578621	2528162	246722459	2	81962											
KLHL21	9903	broad.mit.edu	37	chr1	6653705	6653705	+	Frame_Shift_Del	DEL	C	-	-													ccccaaggacggccaggctgCcccccacatgtacctgtggg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6653705	-	-	6653705	7	5	75	1	0	1	0	1	0	0	0	0	8447	739	26	0	283	0	KLHL21	1	6653705	Frame_Shift_Del	DEL	C	TCGA-17-Z046-01A-01W-0746-08	4125543	6653705	242596916	3	81963											
CA6	765	broad.mit.edu	37	chr1	9034601	9034601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatacgatgcgggtatgGtgtctggccgtcccccttct	11	11	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9034601	T	T	9034601	1	4	75	0	1	0	0	0	0	0	0	0	2547	1276	44	3		3	CA6	1	9034601	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2380896	9034601	240216020	4	81964											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12254473	12254474	+	Intron	DNP	GG	TT	TT													tggagaatggttgggatggtGgcaggtggagttgggtgggg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	12254474	TT	TT	12254473	1	4	75	0	1	0	0	0	0	0	0	0	16417	1363	47	2		2	TNFRSF1B	1	12254473	Intron	DNP	GG	TCGA-17-Z046-01A-01W-0746-08	3219872	12254473	236996148	5	81965											
FBXO42	54455	broad.mit.edu	37	chr1	16582157	16582157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttaaacctgttattccCaggagtatttaccttcaggc	6	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16582157	A	A	16582157	1	1	75	0	1	0	0	0	0	0	0	0	5808	609	21	2		2	FBXO42	1	16582157	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4327684	16582157	232668464	6	81966											
SDHB	6390	broad.mit.edu	37	chr1	17345539	17345559	+	Intron	DEL	AGCTGGTTCAGTGTCCAAGCA	-	-													ttgggtgaaactccttcctcAgctggttcagtgtccaagca							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17345559	-	-	17345539	6	5	75	0	1	1	0	1	0	0	0	0	14078	203	7	0		0	SDHB	1	17345539	Intron	DEL	AGCTGGTTCAGTGTCCAAGCA	TCGA-17-Z046-01A-01W-0746-08	763382	17345539	231905082	7	81967											
PADI1	29943	broad.mit.edu	37	chr1	17570749	17570749	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccctgagcctgcccccAcccgccatcctctctgccct	8	22	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17570749	C	C	17570749	1	2	75	0	1	0	0	0	0	0	0	0	11471	174	6	5		5	PADI1	1	17570749	3'UTR	SNP	A	TCGA-17-Z046-01A-01W-0746-08	225210	17570749	231679872	8	81968											
PAX7	5081	broad.mit.edu	37	chr1	19029763	19029763	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccctccaaccacatgaaCccggtcagcaacggcctgtc	9	18	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19029763	T	T	19029763	2	4	75	1	0	0	0	0	0	0	0	1	11578	506	18	4		4	PAX7	1	19029763	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1459014	19029763	230220858	9	81969											
TAS1R2	80834	broad.mit.edu	37	chr1	19175751	19175751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcatctccaggctctgtcCctaatgaaaagggccctagc	9	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19175751	A	A	19175751	1	1	75	0	1	0	0	0	0	0	0	0	15682	638	22	2		2	TAS1R2	1	19175751	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	145988	19175751	230074870	10	81970											
CAPZB	832	broad.mit.edu	37	chr1	19683356	19683356	+	Intron	DEL	T	-	-													gtcattatcacaatattaccTtttttttttttaaattggag					rs72294042		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19683356	-	-	19683356	6	5	75	0	1	1	0	1	0	0	0	0	2669	1624	56	0		0	CAPZB	1	19683356	Intron	DEL	T	TCGA-17-Z046-01A-01W-0746-08	507605	19683356	229567265	11	81971											
TRIM63	84676	broad.mit.edu	37	chr1	26386766	26386766	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccgctcaccttggtcacTcgacgggaatcctccagctg	10	15	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26386766	A	A	26386766	2	1	75	1	0	0	0	0	0	0	0	1	16663	1538	54	5		5	TRIM63	1	26386766	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	6703410	26386766	222863855	12	81972											
FAM76A	199870	broad.mit.edu	37	chr1	28075744	28075744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaatacatttagggtctGccttggaattagtctgtggc	12	7	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28075744	T	T	28075744	1	4	75	0	1	0	0	0	0	0	0	0	5677	1334	46	3		3	FAM76A	1	28075744	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1688978	28075744	221174877	13	81973											
PTPRU	10076	broad.mit.edu	37	chr1	29585919	29585919	+	Intron	DEL	G	-	-													ggccgcggctcctgcctgcaGggggtgcaggcccagctcac							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29585919	-	-	29585919	6	5	75	0	1	1	0	1	0	0	0	0	12921	1015	35	0		0	PTPRU	1	29585919	Intron	DEL	G	TCGA-17-Z046-01A-01W-0746-08	1510175	29585919	219664702	14	81974											
PTPRU	10076	broad.mit.edu	37	chr1	29616186	29616186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctgttctctctttgcaCgctgccaggagagaccacta	10	12	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29616186	T	T	29616186	1	4	75	0	1	0	0	0	0	0	0	0	12921	551	19	4		4	PTPRU	1	29616186	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	30267	29616186	219634435	15	81975											
COL16A1	1307	broad.mit.edu	37	chr1	32149523	32149523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccctcacgtagctacGgcccagggccccaagactca	9	19	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32149523	T	T	32149523	1	4	75	0	1	0	0	0	0	0	0	0	3705	1131	39	1		1	COL16A1	1	32149523	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2533337	32149523	217101098	16	81976											
ZBTB8A	653121	broad.mit.edu	37	chr1	33059319	33059319	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgttggctatcagtacGgtcaaggatctgatgtcaca	10	10	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33059319	C	C	33059319	3	2	75	1	0	0	0	0	1	0	0	0	17682	1116	39	4	789	4	ZBTB8A	1	33059319	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	909796	33059319	216191302	17	81977											
RBBP4	5928	broad.mit.edu	37	chr1	33135115	33135115	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgggatctgagaaatcTgaaacttaagttgcattcct	9	7	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33135115	A	A	33135115	3	1	75	1	0	0	0	0	1	0	0	0	13209	1580	55	5	947	5	RBBP4	1	33135115	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	75796	33135115	216115506	18	81978											
ADC	113451	broad.mit.edu	37	chr1	33583674	33583675	+	Frame_Shift_Ins	INS	-	C	C													gggttcccccttttgggggaINScccaggcctgccacatcacc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33583675	C	C	33583674	7	5	75	1	0	1	1	0	0	0	0	0	287	275	10	0	1231	0	ADC	1	33583674	Frame_Shift_Ins	INS	-	TCGA-17-Z046-01A-01W-0746-08	448559	33583674	215666947	19	81979											
CSMD2	114784	broad.mit.edu	37	chr1	34089982	34089982	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttagccgcaggggcaggTacagggctgatatgtctctt	13	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34089982	G	G	34089982	1	3	75	0	1	0	0	0	0	0	0	0	3979	1653	57	5		5	CSMD2	1	34089982	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	506308	34089982	215160639	20	81980											
CSMD2	114784	broad.mit.edu	37	chr1	34192034	34192034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtccagtgttctccaacCttgctgacatttcagcgttg	9	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34192034	A	A	34192034	1	1	75	0	1	0	0	0	0	0	0	0	3979	696	24	2		2	CSMD2	1	34192034	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	102052	34192034	215058587	21	81981											
MRPS15	64960	broad.mit.edu	37	chr1	36921630	36921630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagatggtaaccccagcCtttctccatggggttggtgg	12	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36921630	A	A	36921630	1	1	75	0	1	0	0	0	0	0	0	0	9919	696	24	2		2	MRPS15	1	36921630	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2729596	36921630	212328991	22	81982											
GNL2	29889	broad.mit.edu	37	chr1	38056250	38056250	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacaaatatgttagagagGgatctgcatggagtttgccc	12	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38056250	A	A	38056250	1	1	75	0	1	0	0	0	0	0	0	0	6600	1247	43	4		4	GNL2	1	38056250	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1134620	38056250	211194371	23	81983											
EPHA10	284656	broad.mit.edu	37	chr1	38186072	38186072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggggccccgcccgaagCcagagatcttgcagacaagg	14	15	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38186072	A	A	38186072	3	1	75	1	0	0	0	0	1	0	0	0	5208	739	26	3	683	3	EPHA10	1	38186072	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	129822	38186072	211064549	24	81984											
EPHA10	284656	broad.mit.edu	37	chr1	38227077	38227077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccccagccaactggatacCttcgcagaagtcaccacgct	8	17	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38227077	A	A	38227077	3	1	75	1	0	0	0	0	1	0	0	0	5208	695	24	2	2274	2	EPHA10	1	38227077	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	41005	38227077	211023544	25	81985											
MACF1	23499	broad.mit.edu	37	chr1	39838291	39838291	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtacaggctcttcaaaatAtagtgaataaaaattgctct	7	6	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39838291	G	G	39838291	1	3	75	0	1	0	0	0	0	0	0	0	9232	464	16	5		5	MACF1	1	39838291	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1611214	39838291	209412330	26	81986											
MUTYH	4595	broad.mit.edu	37	chr1	45799069	45799069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccacccactgtccctgCtcctcgcctgcctacccgtc	5	24	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45799069	A	A	45799069	1	1	75	0	1	0	0	0	0	0	0	0	10087	812	28	3		3	MUTYH	1	45799069	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5960778	45799069	203451552	27	81987											
CYP4X1	260293	broad.mit.edu	37	chr1	47433439	47433439	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcaaaattcatggtatgccGaccgggatcctggtgggatc	13	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47433439	A	A	47433439	1	1	75	0	1	0	0	0	0	0	0	0	4226	1073	37	4		4	CYP4X1	1	47433439	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1634370	47433439	201817182	28	81988											
SPATA6	54558	broad.mit.edu	37	chr1	48901539	48901539	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgctggccatggtcgctgCtaggtaggatatatctgcat	13	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48901539	T	T	48901539	1	4	75	0	1	0	0	0	0	0	0	0	15129	812	28	4		4	SPATA6	1	48901539	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1468100	48901539	200349082	29	81989											
GLIS1	148979	broad.mit.edu	37	chr1	54060342	54060342	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggaggaggcacagggtgaGgaggaggctggggaggtggg	25	4	0	1	rs146521882	byFrequency;by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54060342	A	A	54060342	2	1	75	1	0	0	0	0	0	0	0	1	6509	987	35	4		4	GLIS1	1	54060342	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5158803	54060342	195190279	30	81990											
ACOT11	26027	broad.mit.edu	37	chr1	55076011	55076011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatggcaacagagaccGgcggtacctgccccaagcaa	11	14	0	1	rs115202613	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55076011	T	T	55076011	1	4	75	0	1	0	0	0	0	0	0	0	149	1131	39	1		1	ACOT11	1	55076011	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1015669	55076011	194174610	31	81991											
C1orf175	374977	broad.mit.edu	37	chr1	55145133	55145134	+	Intron	DNP	GG	AA	AA													gtaaggcctcctgggggcagGgagtgaactgtcactggggc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55145134	AA	AA	55145133	1	1	75	0	1	0	0	0	0	0	0	0	2036	1247	43	4		4	C1orf175	1	55145133	Intron	DNP	GG	TCGA-17-Z046-01A-01W-0746-08	69122	55145133	194105488	32	81992											
C8A	731	broad.mit.edu	37	chr1	57378307	57378307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagacagaaggtaaggtcCgtgcatccccacccagttcc	9	15	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57378307	A	A	57378307	1	1	75	0	1	0	0	0	0	0	0	0	2441	667	23	1		1	C8A	1	57378307	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2233174	57378307	191872314	33	81993											
DAB1	1600	broad.mit.edu	37	chr1	57480689	57480689	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggcctctgaggtacaGgtgagggagggctggtcggg	21	6	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57480689	A	A	57480689	2	1	75	1	0	0	0	0	0	0	0	1	4250	987	35	4		4	DAB1	1	57480689	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	102382	57480689	191769932	34	81994											
INADL	10207	broad.mit.edu	37	chr1	62550351	62550351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaataaaatgtatccactGtcatagaactagttgttgag	8	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62550351	T	T	62550351	1	4	75	0	1	0	0	0	0	0	0	0	7801	1392	48	3		3	INADL	1	62550351	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5069662	62550351	186700270	35	81995											
FOXD3	27022	broad.mit.edu	37	chr1	63789370	63789370	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacccgggcaagggcaactActggaccctggacccgcagt	12	15	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63789370	G	G	63789370	3	3	75	1	0	0	0	0	1	0	0	0	6056	391	14	5	643	5	FOXD3	1	63789370	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1239019	63789370	185461251	36	81996											
ALG6	29929	broad.mit.edu	37	chr1	63871952	63871952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtagctgtaaatcctgatGgactcatgtttaaagttatt	10	5	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63871952	A	A	63871952	1	1	75	0	1	0	0	0	0	0	0	0	522	1363	47	4		4	ALG6	1	63871952	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	82582	63871952	185378669	37	81997											
LRRC7	57554	broad.mit.edu	37	chr1	70488962	70488962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacccacagctggcatggGgttgtataagtggcctccag	13	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70488962	T	T	70488962	3	4	75	1	0	0	0	0	1	0	0	0	9107	1232	43	2	1643	2	LRRC7	1	70488962	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6617010	70488962	178761659	38	81998											
LRRC7	57554	broad.mit.edu	37	chr1	70573515	70573515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataagatccttcaggtaagAcagataaaagaaatgcatgc	9	6	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70573515	T	T	70573515	1	4	75	0	1	0	0	0	0	0	0	0	9107	290	10	5		5	LRRC7	1	70573515	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	84553	70573515	178677106	39	81999											
PTGER3	5733	broad.mit.edu	37	chr1	71331181	71331181	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacttggagagtcactggaTgttgggaatagaaaggaagc	15	4	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71331181	C	C	71331181	1	2	75	0	1	0	0	0	0	0	0	0	12850	1479	51	5		5	PTGER3	1	71331181	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	757666	71331181	177919440	40	82000											
NEGR1	257194	broad.mit.edu	37	chr1	72204026	72204026	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaaataagcaacaagaaaCatccccagtgacaactgcaa	6	11	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72204026	T	T	72204026	1	4	75	0	1	0	0	0	0	0	0	0	10412	493	17	4		4	NEGR1	1	72204026	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	872845	72204026	177046595	41	82001											
LHX8	431707	broad.mit.edu	37	chr1	75626681	75626681	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaattttttatttaacaCctaaagcatttccaacatca	2	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75626681	A	A	75626681	1	1	75	0	1	0	0	0	0	0	0	0	8848	522	18	3		3	LHX8	1	75626681	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3422655	75626681	173623940	42	82002											
SLC44A5	204962	broad.mit.edu	37	chr1	75681541	75681541	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagacaatgtgttctgggtAcctatgagaaggagatattt	11	4	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75681541	T	T	75681541	2	4	75	1	0	0	0	0	0	0	0	1	14753	405	14	5		5	SLC44A5	1	75681541	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	54860	75681541	173569080	43	82003											
ACADM	34	broad.mit.edu	37	chr1	76198497	76198497	+	Intron	DEL	G	-	-													attatgtaatcaaactatctGgatttcaaaatatattttaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76198497	-	-	76198497	6	5	75	0	1	1	0	1	0	0	0	0	113	1363	47	0		0	ACADM	1	76198497	Intron	DEL	G	TCGA-17-Z046-01A-01W-0746-08	516956	76198497	173052124	44	82004											
LPHN2	23266	broad.mit.edu	37	chr1	81893259	81893259	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgatggtggttatggatctGgtgatggacatggtggatat	16	2	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81893259	C	C	81893259	1	2	75	0	1	0	0	0	0	0	0	0	9003	1363	47	4		4	LPHN2	1	81893259	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5694762	81893259	167357362	45	82005											
TTLL7	79739	broad.mit.edu	37	chr1	84387041	84387041	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctcctttgagcctcagcTttttgtttggccaagtttct	8	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84387041	G	G	84387041	3	3	75	1	0	0	0	0	1	0	0	0	16858	1606	56	5	1528	5	TTLL7	1	84387041	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2493782	84387041	164863580	46	82006											
DNASE2B	58511	broad.mit.edu	37	chr1	84877941	84877941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtttttgtgttgttttGtttttaaatccacaaaaaga	6	4	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84877941	T	T	84877941	1	4	75	0	1	0	0	0	0	0	0	0	4705	1392	48	3		3	DNASE2B	1	84877941	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	490900	84877941	164372680	47	82007											
SSX2IP	117178	broad.mit.edu	37	chr1	85117782	85117782	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtttgctctctggctatCtattcgtacttcttatgtca	6	9	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85117782	A	A	85117782	1	1	75	0	1	0	0	0	0	0	0	0	15322	928	32	3		3	SSX2IP	1	85117782	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	239841	85117782	164132839	48	82008											
LPAR3	23566	broad.mit.edu	37	chr1	85331113	85331113	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcttcatgggtgtcctccGgcggctgatggacccacttg	13	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85331113	A	A	85331113	3	1	75	1	0	0	0	0	1	0	0	0	8993	1115	39	4	378	4	LPAR3	1	85331113	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	213331	85331113	163919508	49	82009											
COL24A1	255631	broad.mit.edu	37	chr1	86200557	86200557	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcttgtccaccttggggTgtttagacagtgaatggtga	14	6	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86200557	A	A	86200557	3	1	75	1	0	0	0	0	1	0	0	0	3715	1696	59	5	279	5	COL24A1	1	86200557	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	869444	86200557	163050064	50	82010											
ODF2L	57489	broad.mit.edu	37	chr1	86848120	86848120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatatctttaattttaccCtgatttaggcacaatctaaa	3	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86848120	A	A	86848120	1	1	75	0	1	0	0	0	0	0	0	0	10923	696	24	2		2	ODF2L	1	86848120	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	647563	86848120	162402501	51	82011											
CLCA2	9635	broad.mit.edu	37	chr1	86913141	86913141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtatgctttaaaattaGggttgatttttttttcacac	7	4	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86913141	T	T	86913141	1	4	75	0	1	0	0	0	0	0	0	0	3489	1015	35	2		2	CLCA2	1	86913141	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	65021	86913141	162337480	52	82012											
CLCA2	9635	broad.mit.edu	37	chr1	86921163	86921163	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacacatcatactttaagcAggaaaaagagagcagacaag	9	7	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86921163	C	C	86921163	2	2	75	1	0	0	0	0	0	0	0	1	3489	179	7	5		5	CLCA2	1	86921163	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	8022	86921163	162329458	53	82013											
PKN2	5586	broad.mit.edu	37	chr1	89273071	89273071	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaatctgaatacaagcctGatactcctcagtcaggccta	6	13	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89273071	T	T	89273071	3	4	75	1	0	0	0	0	1	0	0	0	12075	1290	45	3	1929	3	PKN2	1	89273071	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2351908	89273071	159977550	54	82014											
GBP4	115361	broad.mit.edu	37	chr1	89664258	89664258	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagacaccggtgcgcctctgGtcgccgcctgtggaccgtct	14	15	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89664258	C	C	89664258	1	2	75	0	1	0	0	0	0	0	0	0	6338	1276	44	4		4	GBP4	1	89664258	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	391187	89664258	159586363	55	82015											
ZNF644	84146	broad.mit.edu	37	chr1	91382426	91382426	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggctttttaagtagtgAcgtgacttccaccatgccag	11	10	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91382426	T	T	91382426	3	4	75	1	0	0	0	0	1	0	0	0	18187	275	10	5	74	5	ZNF644	1	91382426	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1718168	91382426	157868195	56	82016											
BRDT	676	broad.mit.edu	37	chr1	92443021	92443021	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcatcattgcaaagaaatCttaaaatctagaaaaagatg	5	5	4	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92443021	A	A	92443021	1	1	75	0	1	0	0	0	0	0	0	0	1517	928	32	3		3	BRDT	1	92443021	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1060595	92443021	156807600	57	82017											
ABCD3	5825	broad.mit.edu	37	chr1	94930189	94930189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttgaatatgaggagcaGtgtaagtatgcaagtctgtg	13	3	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94930189	T	T	94930189	1	4	75	0	1	0	0	0	0	0	0	0	62	1044	36	3		3	ABCD3	1	94930189	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2487168	94930189	154320432	58	82018											
DPYD	1806	broad.mit.edu	37	chr1	98012096	98012096	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagaattactacaaagcatAcagcaagaagagagcgctct	8	9	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98012096	T	T	98012096	1	4	75	0	1	0	0	0	0	0	0	0	4785	406	14	5		5	DPYD	1	98012096	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3081907	98012096	151238525	59	82019											
FRRS1	391059	broad.mit.edu	37	chr1	100174709	100174709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagatatgaaaaaaaaaaGtattaccattaaggtttgtg	8	2	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100174709	T	T	100174709	1	4	75	0	1	0	0	0	0	0	0	0	6120	1044	36	3		3	FRRS1	1	100174709	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2162613	100174709	149075912	60	82020											
AGL	178	broad.mit.edu	37	chr1	100346511	100346511	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgttttacttgtttaaaAgcaaattaatttaccttatg	5	4	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100346511	T	T	100346511	1	4	75	0	1	0	0	0	0	0	0	0	384	87	3	5		5	AGL	1	100346511	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	171802	100346511	148904110	61	82021											
DBT	1629	broad.mit.edu	37	chr1	100676651	100676651	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatttcctcactgacatgTtgatcttaagatttccatga	7	8	2	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100676651	C	C	100676651	1	2	75	0	1	0	0	0	0	0	0	0	4291	1740	60	5		5	DBT	1	100676651	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	330140	100676651	148573970	62	82022											
VCAM1	7412	broad.mit.edu	37	chr1	101194677	101194677	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccagagaaaccatttactGttgagatctcccctggaccc	7	14	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101194677	C	C	101194677	3	2	75	1	0	0	0	0	1	0	0	0	17264	1377	48	4	961	4	VCAM1	1	101194677	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	518026	101194677	148055944	63	82023											
COL11A1	1301	broad.mit.edu	37	chr1	103354493	103354493	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccctagagagagaatcagcCaatttaaagggattttctca	8	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103354493	G	G	103354493	1	3	75	0	1	0	0	0	0	0	0	0	3699	609	21	4		4	COL11A1	1	103354493	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2159816	103354493	145896128	64	82024											
COL11A1	1301	broad.mit.edu	37	chr1	103381314	103381314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataaaattcaaatgttatcAtatcattttagattagccct	3	6	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103381314	T	T	103381314	1	4	75	0	1	0	0	0	0	0	0	0	3699	232	8	5		5	COL11A1	1	103381314	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	26821	103381314	145869307	65	82025											
COL11A1	1301	broad.mit.edu	37	chr1	103461455	103461455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttgagacctctgacacCatctgctccctgtggaataa	7	14	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103461455	A	A	103461455	3	1	75	1	0	0	0	0	1	0	0	0	3699	594	21	2	3275	2	COL11A1	1	103461455	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	80141	103461455	145789166	66	82026											
VAV3	10451	broad.mit.edu	37	chr1	108226003	108226003	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacattatacaccaaattatGaggaacaaaggccaacaata	5	9	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108226003	T	T	108226003	1	4	75	0	1	0	0	0	0	0	0	0	17260	1305	45	3		3	VAV3	1	108226003	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4764548	108226003	141024618	67	82027											
MYBPHL	343263	broad.mit.edu	37	chr1	109840013	109840014	+	Intron	INS	-	C	C													ggagagggagttcctgaggaINScccccccatctcccacttcc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109840014	C	C	109840013	6	5	75	0	1	1	1	0	0	0	0	0	10109	290	10	0		0	MYBPHL	1	109840013	Intron	INS	-	TCGA-17-Z046-01A-01W-0746-08	1614010	109840013	139410608	68	82028											
GSTM1	2944	broad.mit.edu	37	chr1	110235905	110235905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaaagatggctgtctgGggcaacaagtagggccttga	13	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110235905	T	T	110235905	3	4	75	1	0	0	0	0	1	0	0	0	6903	1241	43	2	675	2	GSTM1	1	110235905	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	395892	110235905	139014716	69	82029											
MOV10	4343	broad.mit.edu	37	chr1	113243192	113243192	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctgcctgaccctgaaccaGaacccagctgaactgcccct	8	18	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113243192	T	T	113243192	1	4	75	0	1	0	0	0	0	0	0	0	9812	957	33	3		3	MOV10	1	113243192	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3007287	113243192	136007429	70	82030											
DCLRE1B	64858	broad.mit.edu	37	chr1	114449766	114449766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctctttgaaggatattttgGaaccatcctctacacaggtg	8	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114449766	T	T	114449766	3	4	75	1	0	0	0	0	1	0	0	0	4328	1174	41	3	344	3	DCLRE1B	1	114449766	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1206574	114449766	134800855	71	82031											
NRAS	4893	broad.mit.edu	37	chr1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcactgtactcttctTgtccagctgtatccagtatg	8	11	3	0	rs11554290		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115256529	A	A	115256529	3	1	75	1	0	0	0	0	1	0	0	0	10735	1812	63	5	399	5	NRAS	1	115256529	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	806763	115256529	133994092	72	82032											
SPAG17	200162	broad.mit.edu	37	chr1	118534035	118534035	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtatacaaggcattttctCaccataaccagcttgaggag	10	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118534035	A	A	118534035	1	1	75	0	1	0	0	0	0	0	0	0	15095	841	29	3		3	SPAG17	1	118534035	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3277506	118534035	130716586	73	82033											
ECM1	1893	broad.mit.edu	37	chr1	150480792	150480792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacttaggagggggtctggGcttgcatggcaggggtctgg	20	7	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150480792	T	T	150480792	1	4	75	0	1	0	0	0	0	0	0	0	4937	1218	42	3		3	ECM1	1	150480792	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	31946757	150480792	98769829	74	82034											
HRNR	388697	broad.mit.edu	37	chr1	152188371	152188371	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgagctagatccgtgttGttcacccctagatgactgtc	9	12	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152188371	A	A	152188371	4	1	75	1	0	0	0	0	0	1	0	0	7426	1386	48	4	2822	4	HRNR	1	152188371	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1707579	152188371	97062250	75	82035											
CRNN	49860	broad.mit.edu	37	chr1	152382653	152382653	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggctgctgtcctgctccAcggtctgggtgggtgtctgg	18	10	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152382653	T	T	152382653	3	4	75	1	0	0	0	0	1	0	0	0	3924	159	6	5	586	5	CRNN	1	152382653	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	194282	152382653	96867968	76	82036											
LCE2B	26239	broad.mit.edu	37	chr1	152659594	152659594	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccagagccccgactgctGtgagagtgaaccttctgggg	14	12	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152659594	A	A	152659594	3	1	75	1	0	0	0	0	1	0	0	0	8738	1377	48	4	277	4	LCE2B	1	152659594	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	276941	152659594	96591027	77	82037											
LCE1F	353137	broad.mit.edu	37	chr1	152748828	152748828	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtctgaccctccttcagctCctgaacacccgccaccgaga	7	18	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152748828	A	A	152748828	1	1	75	0	1	0	0	0	0	0	0	0	8736	870	30	3		3	LCE1F	1	152748828	5'Flank	SNP	C	TCGA-17-Z046-01A-01W-0746-08	89234	152748828	96501793	78	82038											
SPRR2E	6704	broad.mit.edu	37	chr1	153065951	153065951	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgcaggtgaagctgtGgaacaaggtgagccaattat	14	5	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153065951	T	T	153065951	1	4	75	0	1	0	0	0	0	0	0	0	15218	1363	47	2		2	SPRR2E	1	153065951	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	317123	153065951	96184670	79	82039											
NPR1	4881	broad.mit.edu	37	chr1	153658399	153658399	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggccttgggactggggcagGagtgtactctgatggaggac	19	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153658399	C	C	153658399	1	2	75	0	1	0	0	0	0	0	0	0	10689	1189	41	4		4	NPR1	1	153658399	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	592448	153658399	95592222	80	82040											
INTS3	65123	broad.mit.edu	37	chr1	153721289	153721289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggccattaggagtgtggGtgtgggaaatggggatgaaa	18	2	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153721289	T	T	153721289	1	4	75	0	1	0	0	0	0	0	0	0	7849	1276	44	3		3	INTS3	1	153721289	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	62890	153721289	95529332	81	82041											
INTS3	65123	broad.mit.edu	37	chr1	153735138	153735138	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctccattctcccttcctAgaagcatggggcatgttaga	9	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153735138	G	G	153735138	1	3	75	0	1	0	0	0	0	0	0	0	7849	435	15	5		5	INTS3	1	153735138	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	13849	153735138	95515483	82	82042											
GATAD2B	57459	broad.mit.edu	37	chr1	153792213	153792213	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcctcgctctggctcacTagacaagaaagggaaaaaat	8	11	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153792213	C	C	153792213	5	2	75	1	0	0	0	0	0	0	1	0	6323	1536	53	5	1483	5	GATAD2B	1	153792213	Splice_Site	SNP	T	TCGA-17-Z046-01A-01W-0746-08	57075	153792213	95458408	83	82043											
NUP210L	91181	broad.mit.edu	37	chr1	154115987	154115987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacataaagttcccgggccCgagatacaatttcaatgctg	8	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154115987	A	A	154115987	3	1	75	1	0	0	0	0	1	0	0	0	10856	652	23	1	5411	1	NUP210L	1	154115987	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	323774	154115987	95134634	84	82044											
EFNA1	1942	broad.mit.edu	37	chr1	155103906	155103906	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatcactctgtggcagacGctgccatggagcagtacata	11	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155103906	A	A	155103906	3	1	75	1	0	0	0	0	1	0	0	0	4990	1087	38	4	190	4	EFNA1	1	155103906	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	987919	155103906	94146715	85	82045											
RUSC1	23623	broad.mit.edu	37	chr1	155296443	155296443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttgtccctccctgtccaCagagctgctgctcctgctgc	10	16	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155296443	A	A	155296443	3	1	75	1	0	0	0	0	1	0	0	0	13861	478	17	3	2091	3	RUSC1	1	155296443	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	192537	155296443	93954178	86	82046											
SH2D2A	9047	broad.mit.edu	37	chr1	156785870	156785870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgctgaaggttgggatGggggcttcgtgactccctgt	17	7	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156785870	T	T	156785870	2	4	75	1	0	0	0	0	0	0	0	1	14345	1335	47	2		2	SH2D2A	1	156785870	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1489427	156785870	92464751	87	82047											
FCRL5	83416	broad.mit.edu	37	chr1	157508858	157508858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggggtgggtgattggCaggaacccagggcttaccag	18	9	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157508858	A	A	157508858	1	1	75	0	1	0	0	0	0	0	0	0	5855	725	25	3		3	FCRL5	1	157508858	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	722988	157508858	91741763	88	82048											
FCRL3	115352	broad.mit.edu	37	chr1	157653173	157653173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggattatccagctccaccCtccttactccccctatgtta	4	16	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157653173	A	A	157653173	1	1	75	0	1	0	0	0	0	0	0	0	5853	696	24	2		2	FCRL3	1	157653173	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	144315	157653173	91597448	89	82049											
FCRL2	79368	broad.mit.edu	37	chr1	157738039	157738039	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatatttccttccacaaaaAgaaacaggtcagcagtctaa	5	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157738039	G	G	157738039	1	3	75	0	1	0	0	0	0	0	0	0	5852	87	3	5		5	FCRL2	1	157738039	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	84866	157738039	91512582	90	82050											
KIRREL	55243	broad.mit.edu	37	chr1	158064669	158064669	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccccagctggcactgacaCaaccagccagctgtcctacg	9	17	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158064669	G	G	158064669	3	3	75	1	0	0	0	0	1	0	0	0	8395	478	17	4	2091	4	KIRREL	1	158064669	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	326630	158064669	91185952	91	82051											
CD1A	909	broad.mit.edu	37	chr1	158225836	158225836	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaggctgtgagctgcactCtggaaaggtctcaggaagct	15	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158225836	A	A	158225836	3	1	75	1	0	0	0	0	1	0	0	0	3004	913	32	3	378	3	CD1A	1	158225836	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	161167	158225836	91024785	92	82052											
SPTA1	6708	broad.mit.edu	37	chr1	158646153	158646153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctggcaaagctttgtgGgagaggtataaaaaatcata	10	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158646153	T	T	158646153	1	4	75	0	1	0	0	0	0	0	0	0	15234	1247	43	2		2	SPTA1	1	158646153	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	420317	158646153	90604468	93	82053											
FCER1A	2205	broad.mit.edu	37	chr1	159273776	159273776	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatagaatatttaaaggagaGaatgtgactcttacatgtaa	8	3	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159273776	T	T	159273776	3	4	75	1	0	0	0	0	1	0	0	0	5831	933	33	3	145	3	FCER1A	1	159273776	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	627623	159273776	89976845	94	82054											
CRP	1401	broad.mit.edu	37	chr1	159683224	159683224	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagacgtgggaaccatgcaGtgtaaaaaagcgggaggtac	15	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159683224	T	T	159683224	1	4	75	0	1	0	0	0	0	0	0	0	3927	1044	36	3		3	CRP	1	159683224	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	409448	159683224	89567397	95	82055											
ADAMTS4	9507	broad.mit.edu	37	chr1	161165508	161165508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taataaatctggctgcagctGtggatgatcagatccattac	9	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161165508	T	T	161165508	1	4	75	0	1	0	0	0	0	0	0	0	268	1392	48	3		3	ADAMTS4	1	161165508	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1482284	161165508	88085113	96	82056											
FCGR3A	2214	broad.mit.edu	37	chr1	161514551	161514551	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttactcccaaaaagcccccTgcagaagtaggagccgctgt	9	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161514551	A	A	161514551	3	1	75	1	0	0	0	0	1	0	0	0	5841	1579	55	5	255	5	FCGR3A	1	161514551	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	349043	161514551	87736070	97	82057											
FCRLA	84824	broad.mit.edu	37	chr1	161680434	161680434	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaggttttgatGtcttactagtctcattctaa	5	5	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161680434	A	A	161680434	1	1	75	0	1	0	0	0	0	0	0	0	5857	1392	48	4		4	FCRLA	1	161680434	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	165883	161680434	87570187	98	82058											
C1orf110	339512	broad.mit.edu	37	chr1	162824630	162824630	+	Frame_Shift_Del	DEL	C	-	-													gatgatgaggattccccatgCccaaatatctctccaatgct							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	162824630	-	-	162824630	7	5	75	1	0	1	0	1	0	0	0	0	2003	726	26	0	78	0	C1orf110	1	162824630	Frame_Shift_Del	DEL	C	TCGA-17-Z046-01A-01W-0746-08	1144196	162824630	86425991	99	82059											
RXRG	6258	broad.mit.edu	37	chr1	165386247	165386247	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctaggaaatgcctctctccgGacacgagttttggaactgaa	10	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165386247	C	C	165386247	1	2	75	0	1	0	0	0	0	0	0	0	13876	1189	41	4		4	RXRG	1	165386247	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2561617	165386247	83864374	100	82060											
FAM78B	149297	broad.mit.edu	37	chr1	166039812	166039812	+	Missense_Mutation	SNP	G	A	A													gcacattgctgtcactcacaGgcactgcccatgtcacactg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166039812	A	A	166039812	3	1	75	1	0	0	0	0	1	0	0	0	5680	1000	35	4	337	4	FAM78B	1	166039812	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	653565	166039812	83210809	101	82061	375	2									
FAM78B	149297	broad.mit.edu	37	chr1	166039814	166039814	+	Silent	SNP	C	G	G													acattgctgtcactcacaggCactgcccatgtcacactggg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166039814	G	G	166039814	2	3	75	1	0	0	0	0	0	0	0	1	5680	697	25	4		4	FAM78B	1	166039814	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2	166039814	83210807	102	82062	375	2									
FAM78B	149297	broad.mit.edu	37	chr1	166135239	166135239	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacatgcccaggtcgctgtAggtgttgaagaactccatct	10	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166135239	G	G	166135239	3	3	75	1	0	0	0	0	1	0	0	0	5680	420	15	5	546	5	FAM78B	1	166135239	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	95425	166135239	83115382	103	82063											
ILDR2	387597	broad.mit.edu	37	chr1	166896262	166896262	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcccctttacacactaactCctgcataatgcacagatcac	3	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166896262	A	A	166896262	1	1	75	0	1	0	0	0	0	0	0	0	7780	870	30	3		3	ILDR2	1	166896262	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	761023	166896262	82354359	104	82064											
GPA33	10223	broad.mit.edu	37	chr1	167023838	167023838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcagaggacactgggCtgaaaggctgggctgagagt	17	8	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167023838	A	A	167023838	1	1	75	0	1	0	0	0	0	0	0	0	6651	812	28	3		3	GPA33	1	167023838	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	127576	167023838	82226783	105	82065											
GPA33	10223	broad.mit.edu	37	chr1	167024137	167024137	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggggtgctgcaagtagaaGaggctgtgaggaattgggaa	18	3	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167024137	T	T	167024137	1	4	75	0	1	0	0	0	0	0	0	0	6651	957	33	3		3	GPA33	1	167024137	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	299	167024137	82226484	106	82066											
ADCY10	55811	broad.mit.edu	37	chr1	167863252	167863252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctagtgagaggaggctcCcagtccctattctcttgggc	13	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167863252	T	T	167863252	1	4	75	0	1	0	0	0	0	0	0	0	293	638	22	4		4	ADCY10	1	167863252	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	839115	167863252	81387369	107	82067											
TBX19	9095	broad.mit.edu	37	chr1	168215840	168215840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaattttcctgtaaatgacGcaatttatctactgtgccct	5	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168215840	T	T	168215840	1	4	75	0	1	0	0	0	0	0	0	0	15776	1102	38	3		3	TBX19	1	168215840	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	352588	168215840	81034781	108	82068											
XCL1	6375	broad.mit.edu	37	chr1	168549546	168549546	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaacttaaccaaaaacctCtttagttttccttatcaatc	1	12	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168549546	A	A	168549546	1	1	75	0	1	0	0	0	0	0	0	0	17550	928	32	3		3	XCL1	1	168549546	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	333706	168549546	80701075	109	82069											
SELP	6403	broad.mit.edu	37	chr1	169586107	169586107	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaattctgatcttatattcTtcaaggtgctcaataatact	4	8	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169586107	G	G	169586107	1	3	75	0	1	0	0	0	0	0	0	0	14132	1624	56	5		5	SELP	1	169586107	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1036561	169586107	79664514	110	82070											
KIFAP3	22920	broad.mit.edu	37	chr1	169951180	169951180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagcacaagagtcatcCatggatacagttccaatcat	7	10	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169951180	A	A	169951180	3	1	75	1	0	0	0	0	1	0	0	0	8381	594	21	2	671	2	KIFAP3	1	169951180	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	365073	169951180	79299441	111	82071											
C1orf129	80133	broad.mit.edu	37	chr1	170916555	170916555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgcatgtccttGttgggctttgacatcaaggt	14	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170916555	T	T	170916555	1	4	75	0	1	0	0	0	0	0	0	0	2016	1392	48	3		3	C1orf129	1	170916555	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	965375	170916555	78334066	112	82072											
FMO3	2328	broad.mit.edu	37	chr1	171077373	171077373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaacaggtactactccCcgggtactcgggtgactctc	11	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171077373	A	A	171077373	1	1	75	0	1	0	0	0	0	0	0	0	6014	638	22	2		2	FMO3	1	171077373	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	160818	171077373	78173248	113	82073											
FMO4	2329	broad.mit.edu	37	chr1	171293161	171293161	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgataaatcaatattaatAgacctcctgtcatgggactt	7	7	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171293161	T	T	171293161	1	4	75	0	1	0	0	0	0	0	0	0	6015	435	15	5		5	FMO4	1	171293161	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	215788	171293161	77957460	114	82074											
DNM3	26052	broad.mit.edu	37	chr1	172277816	172277816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacagcaacataaaatgaCtttgaatttggttcaaacta	5	7	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172277816	A	A	172277816	1	1	75	0	1	0	0	0	0	0	0	0	4713	580	20	3		3	DNM3	1	172277816	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	984655	172277816	76972805	115	82075											
TNR	7143	broad.mit.edu	37	chr1	175324464	175324464	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatcttctggcttgcagActagggctctctcatcaaca	7	13	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175324464	T	T	175324464	1	4	75	0	1	0	0	0	0	0	0	0	16461	290	10	5		5	TNR	1	175324464	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3046648	175324464	73926157	116	82076											
TNR	7143	broad.mit.edu	37	chr1	175334909	175334909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacccacctctcttttctcCaaaggaaatggaacattgga	6	12	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334909	A	A	175334909	1	1	75	0	1	0	0	0	0	0	0	0	16461	609	21	2		2	TNR	1	175334909	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	10445	175334909	73915712	117	82077											
PAPPA2	60676	broad.mit.edu	37	chr1	176564440	176564440	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacaacatcagctggcagcTgagcgtccaccaggtccaca	9	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176564440	A	A	176564440	3	1	75	1	0	0	0	0	1	0	0	0	11527	1580	55	5	1706	5	PAPPA2	1	176564440	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1229531	176564440	72686181	118	82078											
ASTN1	460	broad.mit.edu	37	chr1	177000129	177000129	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaaaaactttaagagaaaaGaccaaaagaaagggagaaga	10	4	0	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177000129	T	T	177000129	1	4	75	0	1	0	0	0	0	0	0	0	1068	957	33	3		3	ASTN1	1	177000129	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	435689	177000129	72250492	119	82079											
NPHS2	7827	broad.mit.edu	37	chr1	179534020	179534020	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaattcttggtattggagtTggcacaacttggagactttg	11	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179534020	C	C	179534020	1	2	75	0	1	0	0	0	0	0	0	0	10678	1827	63	5		5	NPHS2	1	179534020	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2533891	179534020	69716601	120	82080											
QSOX1	5768	broad.mit.edu	37	chr1	180144454	180144454	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgtgtgtttgcttccAgttcttcaaggcctttacca	7	13	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180144454	T	T	180144454	5	4	75	1	0	0	0	0	0	0	1	0	12991	202	7	5	375	5	QSOX1	1	180144454	Splice_Site	SNP	A	TCGA-17-Z046-01A-01W-0746-08	610434	180144454	69106167	121	82081											
XPR1	9213	broad.mit.edu	37	chr1	180793779	180793779	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaggtttaggttttatttAtgaaaaatttctatgccagg	8	4	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180793779	T	T	180793779	1	4	75	0	1	0	0	0	0	0	0	0	17578	464	16	5		5	XPR1	1	180793779	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	649325	180793779	68456842	122	82082											
MR1	3140	broad.mit.edu	37	chr1	181024400	181024400	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttccaacaccagatcgatGattgcagatccctcttttcc	5	15	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181024400	A	A	181024400	2	1	75	1	0	0	0	0	0	0	0	1	9846	1285	45	4		4	MR1	1	181024400	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	230621	181024400	68226221	123	82083											
CACNA1E	777	broad.mit.edu	37	chr1	181735776	181735776	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaatcaagggcccggtggGggacagctgttacccagata	14	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181735776	T	T	181735776	1	4	75	0	1	0	0	0	0	0	0	0	2568	1247	43	2		2	CACNA1E	1	181735776	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	711376	181735776	67514845	124	82084											
CACNA1E	777	broad.mit.edu	37	chr1	181767959	181767959	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagtgacacggaagaagatGacaaatgctagaggctgctc	12	7	0	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181767959	A	A	181767959	3	1	75	1	0	0	0	0	1	0	0	0	2568	1290	45	4	6988	4	CACNA1E	1	181767959	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	32183	181767959	67482662	125	82085											
ZNF648	127665	broad.mit.edu	37	chr1	182025530	182025530	+	Frame_Shift_Del	DEL	T	-	-													gattggacctggtgaaggccTggccgcagtcctcacactgg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182025530	-	-	182025530	7	5	75	1	0	1	0	1	0	0	0	0	18190	1580	55	0	94	0	ZNF648	1	182025530	Frame_Shift_Del	DEL	T	TCGA-17-Z046-01A-01W-0746-08	257571	182025530	67225091	126	82086											
HMCN1	83872	broad.mit.edu	37	chr1	186082979	186082979	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacctcaattctacttaTactaacctagattcttgtag	3	9	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186082979	C	C	186082979	1	2	75	0	1	0	0	0	0	0	0	0	7287	1421	49	5		5	HMCN1	1	186082979	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4057449	186082979	63167642	127	82087											
HMCN1	83872	broad.mit.edu	37	chr1	186114646	186114646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcctccctccaatggggGaagagcttgtgggggaccag	14	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186114646	T	T	186114646	3	4	75	1	0	0	0	0	1	0	0	0	7287	1174	41	3	14744	3	HMCN1	1	186114646	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	31667	186114646	63135975	128	82088											
PRG4	10216	broad.mit.edu	37	chr1	186273331	186273331	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacaaccaaacgttcaccCaaaccaccaaacaagaagaa	3	14	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186273331	A	A	186273331	2	1	75	1	0	0	0	0	0	0	0	1	12587	581	21	2		2	PRG4	1	186273331	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	158685	186273331	62977290	129	82089											
TPR	7175	broad.mit.edu	37	chr1	186337169	186337169	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtagagcaatacaggaaagCgaacatagaattgtcacttt	9	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186337169	G	G	186337169	1	3	75	0	1	0	0	0	0	0	0	0	16540	783	27	4		4	TPR	1	186337169	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	63838	186337169	62913452	130	82090											
KCNT2	343450	broad.mit.edu	37	chr1	196367928	196367928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacataaaaattactctgaGgacttgttaaggatacctat	6	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196367928	T	T	196367928	1	4	75	0	1	0	0	0	0	0	0	0	8162	1015	35	2		2	KCNT2	1	196367928	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	10030759	196367928	52882693	131	82091											
CFH	3075	broad.mit.edu	37	chr1	196711237	196711237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgggcccagcccagtgGctggcgcctgtaatcccagc	14	14	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196711237	T	T	196711237	1	4	75	0	1	0	0	0	0	0	0	0	3313	1218	42	3		3	CFH	1	196711237	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	343309	196711237	52539384	132	82092											
CFHR4	10877	broad.mit.edu	37	chr1	196875873	196875873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcggactatttttaataGtactcaatttattagcacac	5	7	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196875873	T	T	196875873	1	4	75	0	1	0	0	0	0	0	0	0	3317	1044	36	3		3	CFHR4	1	196875873	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	164636	196875873	52374748	133	82093											
CRB1	23418	broad.mit.edu	37	chr1	197404183	197404183	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgaaacaccttttgtgaccAgcacaattgctactggaagc	8	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197404183	T	T	197404183	3	4	75	1	0	0	0	0	1	0	0	0	3880	188	7	5	3224	5	CRB1	1	197404183	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	528310	197404183	51846438	134	82094											
NR5A2	2494	broad.mit.edu	37	chr1	200017555	200017555	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agactatgacagaagtccctTtgtaacatcccccattagca	6	12	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200017555	A	A	200017555	3	1	75	1	0	0	0	0	1	0	0	0	10731	1841	64	5	737	5	NR5A2	1	200017555	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2613372	200017555	49233066	135	82095											
CACNA1S	779	broad.mit.edu	37	chr1	201034923	201034923	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgagagtgggcaccagggCtgggagcgggagggggagct	22	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201034923	T	T	201034923	1	4	75	0	1	0	0	0	0	0	0	0	2573	812	28	4		4	CACNA1S	1	201034923	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1017368	201034923	48215698	136	82096											
OPTC	26254	broad.mit.edu	37	chr1	203467929	203467929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtatgcacgcttcaaccGcatcagccgtatcagggccg	10	15	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203467929	T	T	203467929	3	4	75	1	0	0	0	0	1	0	0	0	10982	1087	38	3	501	3	OPTC	1	203467929	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2433006	203467929	45782692	137	82097											
NFASC	23114	broad.mit.edu	37	chr1	204926961	204926961	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaggtcctcaccagtaagtGaaggcccctgtcccggggct	12	14	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204926961	T	T	204926961	1	4	75	0	1	0	0	0	0	0	0	0	10454	1305	45	3		3	NFASC	1	204926961	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1459032	204926961	44323660	138	82098											
MARK1	4139	broad.mit.edu	37	chr1	220752761	220752761	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcgagtagcagacagaaCatcccccggtgtagaaactc	10	11	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220752761	T	T	220752761	2	4	75	1	0	0	0	0	0	0	0	1	9404	477	17	4		4	MARK1	1	220752761	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	15825800	220752761	28497860	139	82099											
MOSC1	64757	broad.mit.edu	37	chr1	220964776	220964776	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctaattgaagctcctccAgggtctggcttcctgccata	9	12	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220964776	G	G	220964776	1	3	75	0	1	0	0	0	0	0	0	0	9807	203	7	5		5	MOSC1	1	220964776	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	212015	220964776	28285845	140	82100											
MOSC1	64757	broad.mit.edu	37	chr1	220971112	220971112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actactttgaaagattgtgtGtggggtggggtggagcatgg	18	3	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220971112	T	T	220971112	1	4	75	0	1	0	0	0	0	0	0	0	9807	1392	48	3		3	MOSC1	1	220971112	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6336	220971112	28279509	141	82101											
NVL	4931	broad.mit.edu	37	chr1	224424332	224424332	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attggagctttaaagaccatGccgggtgcgatggctcatgc	13	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224424332	A	A	224424332	1	1	75	0	1	0	0	0	0	0	0	0	10875	1334	46	4		4	NVL	1	224424332	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3453220	224424332	24826289	142	82102											
LEFTY1	10637	broad.mit.edu	37	chr1	226108984	226108984	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctctagaaagtgcagggCgtggatggtggctcccccag	14	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226108984	T	T	226108984	3	4	75	1	0	0	0	0	1	0	0	0	8787	768	27	4		4	LEFTY1	1	226108984	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1684652	226108984	23141637	143	82103											
PARP1	142	broad.mit.edu	37	chr1	226576616	226576616	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccactcagtgcccttagGcgatcactgtctactcaggg	10	15	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226576616	A	A	226576616	1	1	75	0	1	0	0	0	0	0	0	0	11548	1218	42	4		4	PARP1	1	226576616	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	467632	226576616	22674005	144	82104											
CDC42BPA	8476	broad.mit.edu	37	chr1	227452757	227452758	+	Intron	INS	-	A	A													ggcttcatggacgcagcaggINSaaaaaaatcctgcattgcat							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227452758	A	A	227452757	6	5	75	0	1	1	1	0	0	0	0	0	3102	1189	41	0		0	CDC42BPA	1	227452757	Intron	INS	-	TCGA-17-Z046-01A-01W-0746-08	876141	227452757	21797864	145	82105											
OBSCN	84033	broad.mit.edu	37	chr1	228491451	228491451	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagctgtgctgcagtgtgAgctgagcaaggcggcccccg	15	13	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228491451	T	T	228491451	1	4	75	0	1	0	0	0	0	0	0	0	10907	319	11	5		5	OBSCN	1	228491451	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1038694	228491451	20759170	146	82106											
OBSCN	84033	broad.mit.edu	37	chr1	228529173	228529173	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacgaccaggtggagggGgatgaccgcgccttcgaggt	17	10	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228529173	C	C	228529173	2	2	75	1	0	0	0	0	0	0	0	1	10907	1219	43	4		4	OBSCN	1	228529173	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	37722	228529173	20721448	147	82107											
RAB4A	5867	broad.mit.edu	37	chr1	229422233	229422233	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctctttttatctttcagAttttttgtttaagttcttgg	6	5	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229422233	T	T	229422233	3	4	75	1	0	0	0	0	1	0	0	0	13054	347	12	5	38	5	RAB4A	1	229422233	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	893060	229422233	19828388	148	82108											
NUP133	55746	broad.mit.edu	37	chr1	229611466	229611466	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataatcagtgacgtattgctGaacccaggtgcttctgttaa	9	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229611466	A	A	229611466	2	1	75	1	0	0	0	0	0	0	0	1	10849	1281	45	4		4	NUP133	1	229611466	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	189233	229611466	19639155	149	82109											
DISC1	27185	broad.mit.edu	37	chr1	232144741	232144742	+	Frame_Shift_Ins	INS	-	T	T													ctttgaaggtattggaagaaINStggaagactcacctcatccc					rs149500705	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232144742	T	T	232144741	7	5	75	1	0	1	1	0	0	0	0	0	4578	98	4	0	3031	0	DISC1	1	232144741	Frame_Shift_Ins	INS	-	TCGA-17-Z046-01A-01W-0746-08	2533275	232144741	17105880	150	82110											
HEATR1	55127	broad.mit.edu	37	chr1	236718363	236718363	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacttccagtaactgacagTaacggccatttactttattc	5	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236718363	C	C	236718363	1	2	75	0	1	0	0	0	0	0	0	0	7094	1653	57	5		5	HEATR1	1	236718363	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4573622	236718363	12532258	151	82111											
RYR2	6262	broad.mit.edu	37	chr1	237620166	237620166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaggatcatttgaggcCaggaatttgagaccagcctg	15	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237620166	A	A	237620166	1	1	75	0	1	0	0	0	0	0	0	0	13880	609	21	2		2	RYR2	1	237620166	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	901803	237620166	11630455	152	82112											
RYR2	6262	broad.mit.edu	37	chr1	237774158	237774158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgcagttcctgtcacacGtcctgtggagcagaatgccc	11	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237774158	T	T	237774158	3	4	75	1	0	0	0	0	1	0	0	0	13880	1145	40	3	4922	3	RYR2	1	237774158	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	153992	237774158	11476463	153	82113											
RYR2	6262	broad.mit.edu	37	chr1	237789116	237789116	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaagtcctgtaagcagtatGagagtgcactggcagaatga	12	6	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237789116	A	A	237789116	1	1	75	0	1	0	0	0	0	0	0	0	13880	1305	45	4		4	RYR2	1	237789116	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	14958	237789116	11461505	154	82114											
RYR2	6262	broad.mit.edu	37	chr1	237886536	237886536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaagagtattggatataGcaaatgtgctttttcatctt	8	4	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237886536	T	T	237886536	3	4	75	1	0	0	0	0	1	0	0	0	13880	971	34	3	10957	3	RYR2	1	237886536	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	97420	237886536	11364085	155	82115											
RYR2	6262	broad.mit.edu	37	chr1	237951316	237951316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagaaaaagaagagaaaGccaaggaagacaagggcaaa	13	4	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237951316	T	T	237951316	3	4	75	1	0	0	0	0	1	0	0	0	13880	971	34	3	13723	3	RYR2	1	237951316	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	64780	237951316	11299305	156	82116											
FMN2	56776	broad.mit.edu	37	chr1	240307582	240307582	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggttcatgcgggcagagtCcacctgagagccactgcccc	12	15	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240307582	A	A	240307582	1	1	75	0	1	0	0	0	0	0	0	0	6008	870	30	3		3	FMN2	1	240307582	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2356266	240307582	8943039	157	82117											
RGS7	6000	broad.mit.edu	37	chr1	240934014	240934014	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaagaaaatccagtagacAaaatgtaagcttggtcatga	10	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240934014	G	G	240934014	1	3	75	0	1	0	0	0	0	0	0	0	13419	145	5	5		5	RGS7	1	240934014	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	626432	240934014	8316607	158	82118											
RGS7	6000	broad.mit.edu	37	chr1	240986472	240986472	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttccccatagaagtcctCtttgaaggtatgcaggataa	9	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240986472	A	A	240986472	1	1	75	0	1	0	0	0	0	0	0	0	13419	928	32	3		3	RGS7	1	240986472	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	52458	240986472	8264149	159	82119											
WDR64	128025	broad.mit.edu	37	chr1	241953805	241953805	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaaccaagaaatgtgggCaccagagaaggacataatgg	13	6	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241953805	A	A	241953805	1	1	75	0	1	0	0	0	0	0	0	0	17442	725	25	3		3	WDR64	1	241953805	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	967333	241953805	7296816	160	82120											
HNRNPU	3192	broad.mit.edu	37	chr1	245019447	245019447	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcactcagctacctctggGagggtaaagtttcctgcagg	12	10	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245019447	A	A	245019447	2	1	75	1	0	0	0	0	0	0	0	1	7340	1161	41	4		4	HNRNPU	1	245019447	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3065642	245019447	4231174	161	82121											
AHCTF1	25909	broad.mit.edu	37	chr1	247076680	247076680	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgagtgcttgcactggctCctccatgattaattataggt	10	9	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247076680	T	T	247076680	3	4	75	1	0	0	0	0	1	0	0	0	408	855	30	4	6522	4	AHCTF1	1	247076680	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2057233	247076680	2173941	162	82122											
ZNF669	79862	broad.mit.edu	37	chr1	247264032	247264032	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatggtaacgaagggaagTggaacagctgaaggctttat	13	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247264032	C	C	247264032	3	2	75	1	0	0	0	0	1	0	0	0	18203	1696	59	5	359	5	ZNF669	1	247264032	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	187352	247264032	1986589	163	82123											
OR2B11	127623	broad.mit.edu	37	chr1	247615377	247615377	+	5'Flank	DEL	T	-	-													tcactttcctccctcttgcaTccactcttcctttcccaggt							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247615377	-	-	247615377	6	5	75	0	1	1	0	1	0	0	0	0	11082	1450	50	0		0	OR2B11	1	247615377	5'Flank	DEL	T	TCGA-17-Z046-01A-01W-0746-08	351345	247615377	1635244	164	82124											
OR2T8	343172	broad.mit.edu	37	chr1	248085210	248085210	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaacagtgaggtgaagggAgccctgacaaggtgtatggg	17	5	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248085210	C	C	248085210	2	2	75	1	0	0	0	0	0	0	0	1	11124	291	11	5		5	OR2T8	1	248085210	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	469833	248085210	1165411	165	82125											
OR2L2	26246	broad.mit.edu	37	chr1	248202547	248202547	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcaaagcgctaggttcatAtcaacttagtagtgtacagc	9	8	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248202547	T	T	248202547	1	4	75	0	1	0	0	0	0	0	0	0	11101	464	16	5		5	OR2L2	1	248202547	3'UTR	SNP	A	TCGA-17-Z046-01A-01W-0746-08	117337	248202547	1048074	166	82126											
OR2L13	284521	broad.mit.edu	37	chr1	248246880	248246880	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactactaaagggagagaatTacaatgtgttaaaatgttga	9	3	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248246880	C	C	248246880	1	2	75	0	1	0	0	0	0	0	0	0	11100	1769	61	5		5	OR2L13	1	248246880	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	44333	248246880	1003741	167	82127											
OR2M7	391196	broad.mit.edu	37	chr1	248488059	248488059	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgttctctcagcagtGtctcacttataaaattatgg	6	7	3	0	rs142573696	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248488059	T	T	248488059	1	4	75	0	1	0	0	0	0	0	0	0	11108	1392	48	3		3	OR2M7	1	248488059	5'Flank	SNP	G	TCGA-17-Z046-01A-01W-0746-08	241179	248488059	762562	168	82128											
OR2T4	127074	broad.mit.edu	37	chr1	248525566	248525566	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagacacctcactctatgaGattttcatgtacttgtgctg	7	10	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248525566	C	C	248525566	3	2	75	1	0	0	0	0	1	0	0	0	11121	933	33	4	686	4	OR2T4	1	248525566	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	37507	248525566	725055	169	82129											
SH3YL1	26751	broad.mit.edu	37	chr2	264858	264858	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgcgctgccctgttggcGttggtgcgggactgcgcagg	17	12	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	264858	T	T	264858	1	4	75	0	1	0	0	0	0	0	0	0	14376	1160	40	3		3	SH3YL1	2	264858	5'Flank	SNP	G	TCGA-17-Z046-01A-01W-0746-08		264858	242934515	170	82130											
SNTG2	54221	broad.mit.edu	37	chr2	1161369	1161369	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctggagaaattcctttcTtgccacattatttatccaaa	6	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1161369	C	C	1161369	1	2	75	0	1	0	0	0	0	0	0	0	14989	1624	56	5		5	SNTG2	2	1161369	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	896511	1161369	242038004	171	82131											
ALLC	55821	broad.mit.edu	37	chr2	3743511	3743511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaggaagtctgggtaccgGcattaaataccccaatatgg	10	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3743511	T	T	3743511	1	4	75	0	1	0	0	0	0	0	0	0	534	1218	42	3		3	ALLC	2	3743511	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2582142	3743511	239455862	172	82132											
PDIA6	10130	broad.mit.edu	37	chr2	10952898	10952898	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgccgcacgccgcgccccCgcgcccacgtcccgccccag	11	25	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10952898	A	A	10952898	1	1	75	0	1	0	0	0	0	0	0	0	11766	667	23	1		1	PDIA6	2	10952898	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7209387	10952898	232246475	173	82133											
GREB1	9687	broad.mit.edu	37	chr2	11760985	11760985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagccggtgcctggcacgcGgatggggcttcctcactggg	16	13	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11760985	T	T	11760985	1	4	75	0	1	0	0	0	0	0	0	0	6826	1131	39	1		1	GREB1	2	11760985	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	808087	11760985	231438388	174	82134											
DDX1	1653	broad.mit.edu	37	chr2	15744597	15744597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataccattggatgttacctgGatatagataagggacatgtc	10	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15744597	A	A	15744597	3	1	75	1	0	0	0	0	1	0	0	0	4374	1174	41	4	627	4	DDX1	2	15744597	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3983612	15744597	227454776	175	82135											
APOB	338	broad.mit.edu	37	chr2	21232755	21232755	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgattttctcagctacttCaaaatccccaataagattta	3	9	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21232755	A	A	21232755	4	1	75	1	0	0	0	0	0	1	0	0	787	835	29	3	6722	3	APOB	2	21232755	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5488158	21232755	221966618	176	82136											
APOB	338	broad.mit.edu	37	chr2	21252355	21252355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggaaagaagaaaGggagggagggaggaaggaag	22	0	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21252355	T	T	21252355	1	4	75	0	1	0	0	0	0	0	0	0	787	1015	35	2		2	APOB	2	21252355	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	19600	21252355	221947018	177	82137											
KIF3C	3797	broad.mit.edu	37	chr2	26203619	26203619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctccagctgggccttcaGgcgggcaatctcctcttgga	11	14	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26203619	T	T	26203619	3	4	75	1	0	0	0	0	1	0	0	0	8372	991	35	2	1245	2	KIF3C	2	26203619	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4951264	26203619	216995754	178	82138											
GPR113	165082	broad.mit.edu	37	chr2	26535815	26535815	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctcagagatctcaccttcAgggctctgcggtcaagctgt	12	12	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26535815	T	T	26535815	3	4	75	1	0	0	0	0	1	0	0	0	6695	188	7	5	1695	5	GPR113	2	26535815	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	332196	26535815	216663558	179	82139											
OTOF	9381	broad.mit.edu	37	chr2	26686711	26686711	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccttggtgggaaggtgccTgccaggctttctggaatgca	16	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26686711	A	A	26686711	1	1	75	0	1	0	0	0	0	0	0	0	11397	1595	55	5		5	OTOF	2	26686711	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	150896	26686711	216512662	180	82140											
DPYSL5	56896	broad.mit.edu	37	chr2	27154704	27154704	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccaacatggtgaaacccCattgctactaaaaatacaaa	6	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27154704	T	T	27154704	1	4	75	0	1	0	0	0	0	0	0	0	4790	609	21	4		4	DPYSL5	2	27154704	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	467993	27154704	216044669	181	82141											
YPEL5	51646	broad.mit.edu	37	chr2	30379545	30379546	+	Missense_Mutation	DNP	GG	TT	TT													gaattttccttgatcatatcGgtggtacccgtctgttttct							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30379546	TT	TT	30379545	3	4	75	1	0	0	0	0	1	0	0	0	17620	1116	39	1	30	1	YPEL5	2	30379545	Missense_Mutation	DNP	GG	TCGA-17-Z046-01A-01W-0746-08	3224841	30379545	212819828	182	82142											
EHD3	30845	broad.mit.edu	37	chr2	31489433	31489433	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctggaagctggccgacattGacaaggatggcatgctggac	14	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31489433	A	A	31489433	3	1	75	1	0	0	0	0	1	0	0	0	5019	1290	45	4	1493	4	EHD3	2	31489433	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1109888	31489433	211709940	183	82143											
XDH	7498	broad.mit.edu	37	chr2	31594945	31594945	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataataggacctgcctataaGgtcttcccctctctctagcc	6	14	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31594945	C	C	31594945	1	2	75	0	1	0	0	0	0	0	0	0	17553	1015	35	4		4	XDH	2	31594945	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	105512	31594945	211604428	184	82144											
SPAST	6683	broad.mit.edu	37	chr2	32314550	32314550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatcgtgaaacaatattaGttgggaaatgtagatatttt	8	2	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32314550	T	T	32314550	1	4	75	0	1	0	0	0	0	0	0	0	15113	1044	36	3		3	SPAST	2	32314550	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	719605	32314550	210884823	185	82145											
SLC8A1	6546	broad.mit.edu	37	chr2	40342702	40342702	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acattcaccgcgttgctgccCgtgacgttacctatggaggc	11	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40342702	G	G	40342702	2	3	75	1	0	0	0	0	0	0	0	1	14820	639	23	4		4	SLC8A1	2	40342702	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8028152	40342702	202856671	186	82146											
SLC8A1	6546	broad.mit.edu	37	chr2	40657408	40657408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaaagacttaatcgccGcatgttgtacatgacacttc	10	9	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40657408	T	T	40657408	2	4	75	1	0	0	0	0	0	0	0	1	14820	1086	38	3		3	SLC8A1	2	40657408	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	314706	40657408	202541965	187	82147											
PRKCE	5581	broad.mit.edu	37	chr2	46234816	46234816	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggtctgtggcacacacGggtggaactgctggttttgt	15	8	1	0	rs78613186	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46234816	T	T	46234816	1	4	75	0	1	0	0	0	0	0	0	0	12617	1131	39	1		1	PRKCE	2	46234816	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5577408	46234816	196964557	188	82148											
LHCGR	3973	broad.mit.edu	37	chr2	48916015	48916015	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagaattattggcttgaggTaagggattttctctgagtat	12	3	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48916015	A	A	48916015	1	1	75	0	1	0	0	0	0	0	0	0	8834	1653	57	5		5	LHCGR	2	48916015	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2681199	48916015	194283358	189	82149											
LHCGR	3973	broad.mit.edu	37	chr2	48916070	48916070	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatgtttctttaaaggcaAagaaacaaaaggaaacaaag	7	4	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48916070	G	G	48916070	1	3	75	0	1	0	0	0	0	0	0	0	8834	29	1	5		5	LHCGR	2	48916070	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	55	48916070	194283303	190	82150											
FSHR	2492	broad.mit.edu	37	chr2	49191225	49191225	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agattttttttttttcttctCacatcatacctgcccttgag	4	10	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49191225	T	T	49191225	1	4	75	0	1	0	0	0	0	0	0	0	6133	841	29	4		4	FSHR	2	49191225	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	275155	49191225	194008148	191	82151											
EFEMP1	2202	broad.mit.edu	37	chr2	56149454	56149454	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctttttttgtcacagaatCccgctgaaccgtacttattt	6	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56149454	A	A	56149454	1	1	75	0	1	0	0	0	0	0	0	0	4981	870	30	3		3	EFEMP1	2	56149454	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6958229	56149454	187049919	192	82152											
ANTXR1	84168	broad.mit.edu	37	chr2	69351656	69351656	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcagcctgttgctcattgCacgccctgctgagagtctgc	10	14	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69351656	G	G	69351656	1	3	75	0	1	0	0	0	0	0	0	0	711	725	25	4		4	ANTXR1	2	69351656	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	13202202	69351656	173847717	193	82153											
ANXA4	307	broad.mit.edu	37	chr2	70037653	70037653	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctggtcttgaggggacagAttgctctggagtgtgacagg	18	6	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70037653	T	T	70037653	1	4	75	0	1	0	0	0	0	0	0	0	720	348	12	5		5	ANXA4	2	70037653	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	685997	70037653	173161720	194	82154											
SFXN5	94097	broad.mit.edu	37	chr2	73188361	73188361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagcagccgggggcgtgCctgcaggagagccgtcctgt	19	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73188361	A	A	73188361	3	1	75	1	0	0	0	0	1	0	0	0	14311	739	26	3	186	3	SFXN5	2	73188361	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3150708	73188361	170011012	195	82155											
REG3A	5068	broad.mit.edu	37	chr2	79384250	79384250	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgaggtggtcaggttgGgggaattaagcgaatattct	15	3	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79384250	T	T	79384250	1	4	75	0	1	0	0	0	0	0	0	0	13320	1247	43	2		2	REG3A	2	79384250	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6195889	79384250	163815123	196	82156											
REG3A	5068	broad.mit.edu	37	chr2	79385439	79385439	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaggtaacagagaggggagGatatactggcacctgtgtgg	17	5	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79385439	A	A	79385439	1	1	75	0	1	0	0	0	0	0	0	0	13320	1189	41	4		4	REG3A	2	79385439	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1189	79385439	163813934	197	82157											
CTNNA2	1496	broad.mit.edu	37	chr2	80085085	80085085	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcacagatctttaggatgGccagtctctaagcctcttgt	8	10	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80085085	A	A	80085085	1	1	75	0	1	0	0	0	0	0	0	0	4047	1218	42	4		4	CTNNA2	2	80085085	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	699646	80085085	163114288	198	82158											
CTNNA2	1496	broad.mit.edu	37	chr2	80390296	80390296	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggaaaacctcgaaaaGgagctcctcggtcactttca	10	11	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80390296	C	C	80390296	1	2	75	0	1	0	0	0	0	0	0	0	4047	1015	35	4		4	CTNNA2	2	80390296	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	305211	80390296	162809077	199	82159											
CTNNA2	1496	broad.mit.edu	37	chr2	80773089	80773089	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcaaagttgctcaggatAacatggacgtcttcaaagac	10	8	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80773089	T	T	80773089	3	4	75	1	0	0	0	0	1	0	0	0	4047	362	13	5	1271	5	CTNNA2	2	80773089	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	382793	80773089	162426284	200	82160											
CTNNA2	1496	broad.mit.edu	37	chr2	80782886	80782886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcgatgtggacactctgGaccggactgcaggggccatc	16	11	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80782886	T	T	80782886	3	4	75	1	0	0	0	0	1	0	0	0	4047	1174	41	3	1443	3	CTNNA2	2	80782886	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	9797	80782886	162416487	201	82161											
RGPD1	400966	broad.mit.edu	37	chr2	87201181	87201181	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacccttaagccaattttTttattttatttcaggtgcta	4	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87201181	G	G	87201181	1	3	75	0	1	0	0	0	0	0	0	0	13393	1856	64	5		5	RGPD1	2	87201181	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	6418295	87201181	155998192	202	82162											
EIF2AK3	9451	broad.mit.edu	37	chr2	88857244	88857244	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctattagggttgctagcaCaacttaaggctaattgcttg	9	8	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88857244	A	A	88857244	1	1	75	0	1	0	0	0	0	0	0	0	5038	493	17	3		3	EIF2AK3	2	88857244	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1656063	88857244	154342129	203	82163											
TEKT4	150483	broad.mit.edu	37	chr2	95539252	95539252	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctctggtgctcagggcgTctcctccctcaggaagccga	13	14	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95539252	A	A	95539252	1	1	75	0	1	0	0	0	0	0	0	0	15877	1682	58	5		5	TEKT4	2	95539252	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	6682008	95539252	147660121	204	82164											
NCAPH	23397	broad.mit.edu	37	chr2	97007830	97007830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccccaagtttacaaacacGcagattacggaacattactc	5	12	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97007830	T	T	97007830	2	4	75	1	0	0	0	0	0	0	0	1	10304	1074	38	3		3	NCAPH	2	97007830	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1468578	97007830	146191543	205	82165											
VWA3B	200403	broad.mit.edu	37	chr2	98914217	98914217	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacccagtaggcatcctatGgtgcccaagattatctgctg	9	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98914217	A	A	98914217	1	1	75	0	1	0	0	0	0	0	0	0	17368	1363	47	4		4	VWA3B	2	98914217	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1906387	98914217	144285156	206	82166											
AFF3	3899	broad.mit.edu	37	chr2	100628044	100628045	+	Intron	INS	-	G	G													tcttcacccctgcaagaaatINSataaacaccacaagaagctg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100628045	G	G	100628044	6	5	75	0	1	1	1	0	0	0	0	0	358	1421	49	0		0	AFF3	2	100628044	Intron	INS	-	TCGA-17-Z046-01A-01W-0746-08	1713827	100628044	142571329	207	82167											
AFF3	3899	broad.mit.edu	37	chr2	100632916	100632916	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatgtggtggtggagatGgtgatggtggtggtaatggt	22	0	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100632916	A	A	100632916	1	1	75	0	1	0	0	0	0	0	0	0	358	1363	47	4		4	AFF3	2	100632916	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4872	100632916	142566457	208	82168											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105897158	105897158	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggtagagagagatcagctCccggacatcaagctggccgc	15	11	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105897158	A	A	105897158	4	1	75	1	0	0	0	0	0	1	0	0	15947	864	30	3	1466	3	TGFBRAP1	2	105897158	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5264242	105897158	137302215	209	82169											
IL1F8	27177	broad.mit.edu	37	chr2	113783954	113783954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatcccaaagagaatgcGgggcactgaagcaataagag	13	7	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113783954	T	T	113783954	1	4	75	0	1	0	0	0	0	0	0	0	7726	1131	39	1		1	IL1F8	2	113783954	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7886796	113783954	129415419	210	82170											
DPP10	57628	broad.mit.edu	37	chr2	116447548	116447548	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgccaatcatggttttatgGaagatgttaactgaaacttt	8	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116447548	T	T	116447548	1	4	75	0	1	0	0	0	0	0	0	0	4767	1189	41	3		3	DPP10	2	116447548	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2663594	116447548	126751825	211	82171											
DPP10	57628	broad.mit.edu	37	chr2	116534723	116534723	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagcagttggtacattcgTgtttaccagagagatgctgt	11	7	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116534723	A	A	116534723	1	1	75	0	1	0	0	0	0	0	0	0	4767	1711	59	5		5	DPP10	2	116534723	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	87175	116534723	126664650	212	82172											
CLASP1	23332	broad.mit.edu	37	chr2	122217592	122217592	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccgcactacctgagacCgcaggtccttagcagagagt	10	15	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122217592	T	T	122217592	3	4	75	1	0	0	0	0	1	0	0	0	3485	652	23	4	3642	4	CLASP1	2	122217592	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5682869	122217592	120981781	213	82173											
CNTNAP5	129684	broad.mit.edu	37	chr2	125547512	125547512	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagacagaaaggcttcctagGatgcattcgctccttacact	8	12	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125547512	A	A	125547512	3	1	75	1	0	0	0	0	1	0	0	0	3682	1174	41	4	2853	4	CNTNAP5	2	125547512	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3329920	125547512	117651861	214	82174											
GYPC	2995	broad.mit.edu	37	chr2	127447808	127447808	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtcttcctctctgacctcAgattcttgtcctctgttcac	6	14	6	2	rs55863428		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127447808	G	G	127447808	1	3	75	0	1	0	0	0	0	0	0	0	6975	203	7	5		5	GYPC	2	127447808	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1900296	127447808	115751565	215	82175											
POTEF	728378	broad.mit.edu	37	chr2	130869654	130869654	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgctcatgtacaccaagTaacagtggtgtgaggccatg	11	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130869654	A	A	130869654	3	1	75	1	0	0	0	0	1	0	0	0	12361	1635	57	5	2444	5	POTEF	2	130869654	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	3421846	130869654	112329719	216	82176											
CCDC115	84317	broad.mit.edu	37	chr2	131099692	131099692	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgctcgcaggtcaagcgCcgccatggacacacctccag	10	18	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131099692	T	T	131099692	3	4	75	1	0	0	0	0	1	0	0	0	2778	739	26	4	555	4	CCDC115	2	131099692	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	230038	131099692	112099681	217	82177											
FAM123C	205147	broad.mit.edu	37	chr2	131520302	131520302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgccaggacctgttggaCagcgagctcctggccgatgc	14	13	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131520302	A	A	131520302	3	1	75	1	0	0	0	0	1	0	0	0	5470	477	17	3	659	3	FAM123C	2	131520302	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	420610	131520302	111679071	218	82178											
NCKAP5	344148	broad.mit.edu	37	chr2	133531573	133531573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacaaatatgtgggcatagGtgtgagtgtttgcatgtata	12	3	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133531573	T	T	133531573	1	4	75	0	1	0	0	0	0	0	0	0	10318	1276	44	3		3	NCKAP5	2	133531573	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2011271	133531573	109667800	219	82179											
NCKAP5	344148	broad.mit.edu	37	chr2	133541460	133541460	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactggagcagaaattcctTtcagcagcggggatttgaat	11	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133541460	C	C	133541460	3	2	75	1	0	0	0	0	1	0	0	0	10318	1841	64	5	2833	5	NCKAP5	2	133541460	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	9887	133541460	109657913	220	82180											
NCKAP5	344148	broad.mit.edu	37	chr2	133626453	133626453	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctagcttaacaacatgaGctccaatatagtcacaaaag	5	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133626453	C	C	133626453	1	2	75	0	1	0	0	0	0	0	0	0	10318	986	34	4		4	NCKAP5	2	133626453	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	84993	133626453	109572920	221	82181											
LCT	3938	broad.mit.edu	37	chr2	136564838	136564838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctcttgctgtgcgagGcctgttcgtgttgttgaaat	15	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136564838	T	T	136564838	3	4	75	1	0	0	0	0	1	0	0	0	8765	1203	42	3	1786	3	LCT	2	136564838	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2938385	136564838	106634535	222	82182											
LCT	3938	broad.mit.edu	37	chr2	136566553	136566553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtgtactgaggctcaGcgagatgacccccttctgct	11	13	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136566553	T	T	136566553	3	4	75	1	0	0	0	0	1	0	0	0	8765	962	34	3	2459	3	LCT	2	136566553	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1715	136566553	106632820	223	82183											
THSD7B	80731	broad.mit.edu	37	chr2	137918066	137918066	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagataaccagctcaagcCtaacggtattcagttttagg	8	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137918066	A	A	137918066	1	1	75	0	1	0	0	0	0	0	0	0	16003	696	24	2		2	THSD7B	2	137918066	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1351513	137918066	105281307	224	82184											
THSD7B	80731	broad.mit.edu	37	chr2	138208637	138208637	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagctaaaaaagctatcCtcattattatttcccattga	3	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138208637	T	T	138208637	1	4	75	0	1	0	0	0	0	0	0	0	16003	696	24	4		4	THSD7B	2	138208637	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	290571	138208637	104990736	225	82185											
THSD7B	80731	broad.mit.edu	37	chr2	138378419	138378419	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaatatgaaactgacccaCaggggaagaaaaacagagcc	10	9	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138378419	G	G	138378419	1	3	75	0	1	0	0	0	0	0	0	0	16003	493	17	4		4	THSD7B	2	138378419	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	169782	138378419	104820954	226	82186											
LRP1B	53353	broad.mit.edu	37	chr2	141091871	141091871	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagttgagaaaataggaAatgaaatgtaaataacttca	7	3	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141091871	G	G	141091871	1	3	75	0	1	0	0	0	0	0	0	0	9042	29	1	5		5	LRP1B	2	141091871	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2713452	141091871	102107502	227	82187											
LRP1B	53353	broad.mit.edu	37	chr2	141214071	141214071	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtcctattatcagctgccaGatagaagttagtgggacatg	11	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141214071	T	T	141214071	3	4	75	1	0	0	0	0	1	0	0	0	9042	933	33	3	4003	3	LRP1B	2	141214071	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	122200	141214071	101985302	228	82188											
LRP1B	53353	broad.mit.edu	37	chr2	141294000	141294001	+	Intron	DNP	AA	TT	TT													aaagtacctcattttaacacAagcaaagccacatcaattgc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	141294001	TT	TT	141294000	1	4	75	0	1	0	0	0	0	0	0	0	9042	145	5	5		5	LRP1B	2	141294000	Intron	DNP	AA	TCGA-17-Z046-01A-01W-0746-08	79929	141294000	101905373	229	82189											
ZEB2	9839	broad.mit.edu	37	chr2	145157428	145157428	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaagtaaaggggcttccatCcctacacctaagtgctgcat	8	13	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145157428	T	T	145157428	2	4	75	1	0	0	0	0	0	0	0	1	17750	842	30	4		4	ZEB2	2	145157428	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3863428	145157428	98041945	230	82190											
ACVR2A	92	broad.mit.edu	37	chr2	148675011	148675011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggtaaaactacttaacGttttactttagtaaagtctg	6	5	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148675011	T	T	148675011	1	4	75	0	1	0	0	0	0	0	0	0	223	1160	40	3		3	ACVR2A	2	148675011	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3517583	148675011	94524362	231	82191											
MMADHC	27249	broad.mit.edu	37	chr2	150427727	150427727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgcttaagatagcattaCtagagattgttttattttta	6	3	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150427727	A	A	150427727	1	1	75	0	1	0	0	0	0	0	0	0	9735	580	20	3		3	MMADHC	2	150427727	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1752716	150427727	92771646	232	82192											
MMADHC	27249	broad.mit.edu	37	chr2	150436250	150436250	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcttcttaaaattatgtaTatttttatctaaaagatctt	3	5	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150436250	A	A	150436250	1	1	75	0	1	0	0	0	0	0	0	0	9735	1421	49	5		5	MMADHC	2	150436250	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	8523	150436250	92763123	233	82193											
FMNL2	114793	broad.mit.edu	37	chr2	153475439	153475439	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaagcaattcaaagacAgtctaccctggaaaaaaaga	8	7	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153475439	G	G	153475439	3	3	75	1	0	0	0	0	1	0	0	0	6010	188	7	5	1448	5	FMNL2	2	153475439	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3039189	153475439	89723934	234	82194											
GALNT13	114805	broad.mit.edu	37	chr2	155265578	155265578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtatattcaactgtcatgGtatgggaggaaatcaggtaa	13	4	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155265578	T	T	155265578	3	4	75	1	0	0	0	0	1	0	0	0	6273	1261	44	3	1413	3	GALNT13	2	155265578	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1790139	155265578	87933795	235	82195											
KCNJ3	3760	broad.mit.edu	37	chr2	155555929	155555929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactcacgcttatgttccgGgtgggcaacctgcgcaacag	11	12	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155555929	T	T	155555929	2	4	75	1	0	0	0	0	0	0	0	1	8122	1219	43	2		2	KCNJ3	2	155555929	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	290351	155555929	87643444	236	82196											
CCDC148	130940	broad.mit.edu	37	chr2	159214956	159214956	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacacatacacacacaacttCtaacctttagctttgcagag	4	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159214956	A	A	159214956	1	1	75	0	1	0	0	0	0	0	0	0	2808	928	32	3		3	CCDC148	2	159214956	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3659027	159214956	83984417	237	82197											
PLA2R1	22925	broad.mit.edu	37	chr2	160840536	160840536	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaattcttcgcaaaatgcttCagcttctctccatgttcttt	4	11	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160840536	T	T	160840536	3	4	75	1	0	0	0	0	1	0	0	0	12105	835	29	4	2385	4	PLA2R1	2	160840536	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1625580	160840536	82358837	238	82198											
PLA2R1	22925	broad.mit.edu	37	chr2	160884885	160884885	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttacctctgaaaatacaaTgagtgtctttaatattagaa	5	5	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160884885	C	C	160884885	1	2	75	0	1	0	0	0	0	0	0	0	12105	1479	51	5		5	PLA2R1	2	160884885	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	44349	160884885	82314488	239	82199											
GCG	2641	broad.mit.edu	37	chr2	163004135	163004135	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaacagtaaggcaggcatCtagagtatttcaataggtag	10	5	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163004135	A	A	163004135	1	1	75	0	1	0	0	0	0	0	0	0	6352	928	32	3		3	GCG	2	163004135	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2119250	163004135	80195238	240	82200											
SCN3A	6328	broad.mit.edu	37	chr2	166003580	166003580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactatttagaacacagagCtttgaaaacagttgagtatg	9	6	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166003580	A	A	166003580	1	1	75	0	1	0	0	0	0	0	0	0	14031	812	28	3		3	SCN3A	2	166003580	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2999445	166003580	77195793	241	82201											
SCN2A	6326	broad.mit.edu	37	chr2	166187921	166187921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttgggactgttgtaaacCatggttaaaggtgaaacacc	11	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166187921	A	A	166187921	3	1	75	1	0	0	0	0	1	0	0	0	14029	594	21	2	2377	2	SCN2A	2	166187921	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	184341	166187921	77011452	242	82202											
SCN7A	6332	broad.mit.edu	37	chr2	167321928	167321928	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtccttcattaaatactattGacaggtgataatgatttaat	6	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167321928	T	T	167321928	1	4	75	0	1	0	0	0	0	0	0	0	14036	1305	45	3		3	SCN7A	2	167321928	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1134007	167321928	75877445	243	82203											
DHRS9	10170	broad.mit.edu	37	chr2	169952148	169952148	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctaacaagtctcttcccTaagactcattatgccgctgg	7	13	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169952148	A	A	169952148	2	1	75	1	0	0	0	0	0	0	0	1	4538	1509	53	5		5	DHRS9	2	169952148	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2630220	169952148	73247225	244	82204											
LRP2	4036	broad.mit.edu	37	chr2	170044753	170044753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcgtcgctatagtcacCacagtcattgtgccggtcac	8	15	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170044753	A	A	170044753	3	1	75	1	0	0	0	0	1	0	0	0	9043	594	21	2	5036	2	LRP2	2	170044753	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	92605	170044753	73154620	245	82205											
MYO3B	140469	broad.mit.edu	37	chr2	171056660	171056660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catttttctaccctgtttagGatatggatgaagaaattgag	9	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171056660	T	T	171056660	3	4	75	1	0	0	0	0	1	0	0	0	10171	1188	41	3	197	3	MYO3B	2	171056660	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1011907	171056660	72142713	246	82206											
MYO3B	140469	broad.mit.edu	37	chr2	171256678	171256678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatgaccttcatatatgGttcttgatgtccttttcagg	9	8	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171256678	T	T	171256678	1	4	75	0	1	0	0	0	0	0	0	0	10171	1276	44	3		3	MYO3B	2	171256678	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	200018	171256678	71942695	247	82207											
SLC25A12	8604	broad.mit.edu	37	chr2	172665976	172665976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttacaataaaatttaaaaCttattccatatgattattga	2	4	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172665976	A	A	172665976	1	1	75	0	1	0	0	0	0	0	0	0	14588	580	20	3		3	SLC25A12	2	172665976	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1409298	172665976	70533397	248	82208											
TTN	7273	broad.mit.edu	37	chr2	179617807	179617807	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aactcaaggatcctattaatCctttagaatttctacttaaa	3	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179617807	G	G	179617807	1	3	75	0	1	0	0	0	0	0	0	0	16861	870	30	4		4	TTN	2	179617807	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6951831	179617807	63581566	249	82209											
TTN	7273	broad.mit.edu	37	chr2	179664346	179664346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttggggatcttgactttGgcttcggaggaatcctggga	16	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179664346	T	T	179664346	3	4	75	1	0	0	0	0	1	0	0	0	16861	1348	47	2	110634	2	TTN	2	179664346	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	46539	179664346	63535027	250	82210											
ITGA4	3676	broad.mit.edu	37	chr2	182344885	182344885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaattgtgatgggggccCcaggatcatcttactggact	11	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182344885	A	A	182344885	3	1	75	1	0	0	0	0	1	0	0	0	7948	623	22	2	668	2	ITGA4	2	182344885	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2680539	182344885	60854488	251	82211											
NUP35	129401	broad.mit.edu	37	chr2	183989104	183989104	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaaccccataaggtagcaCgccgttacccgtggggagcg	13	14	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183989104	A	A	183989104	1	1	75	0	1	0	0	0	0	0	0	0	10858	551	19	3		3	NUP35	2	183989104	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1644219	183989104	59210269	252	82212											
ZNF804A	91752	broad.mit.edu	37	chr2	185801235	185801235	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgtctaatgattgcatatCtgtgcaagctaccacagagg	9	9	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801235	A	A	185801235	3	1	75	1	0	0	0	0	1	0	0	0	18299	913	32	3	1126	3	ZNF804A	2	185801235	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1812131	185801235	57398138	253	82213											
DIRC1	116093	broad.mit.edu	37	chr2	189599310	189599310	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaaacgaataaagggagaTgagcagcagcagggcattgt	13	6	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189599310	A	A	189599310	1	1	75	0	1	0	0	0	0	0	0	0	4573	1479	51	5		5	DIRC1	2	189599310	3'UTR	SNP	T	TCGA-17-Z046-01A-01W-0746-08	3798075	189599310	53600063	254	82214											
COL3A1	1281	broad.mit.edu	37	chr2	189861230	189861230	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaaggaaatgatgtgagttCcttcattaatttcttcaata	6	5	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189861230	A	A	189861230	1	1	75	0	1	0	0	0	0	0	0	0	3720	870	30	3		3	COL3A1	2	189861230	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	261920	189861230	53338143	255	82215											
COL5A2	1290	broad.mit.edu	37	chr2	189917015	189917015	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attagttacatgtattttccTgggattttttttcacaggaa	7	5	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189917015	A	A	189917015	1	1	75	0	1	0	0	0	0	0	0	0	3729	1595	55	5		5	COL5A2	2	189917015	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	55785	189917015	53282358	256	82216											
COL5A2	1290	broad.mit.edu	37	chr2	189922256	189922256	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcagcaatttcatgtaGttcaacttagtgcttatatt	7	6	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189922256	C	C	189922256	1	2	75	0	1	0	0	0	0	0	0	0	3729	1044	36	4		4	COL5A2	2	189922256	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5241	189922256	53277117	257	82217											
SATB2	23314	broad.mit.edu	37	chr2	200233472	200233472	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttttcaaaatatgactaCttctttttagggacaagaaa	5	5	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200233472	G	G	200233472	1	3	75	0	1	0	0	0	0	0	0	0	13966	580	20	4		4	SATB2	2	200233472	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	10311216	200233472	42965901	258	82218											
SGOL2	151246	broad.mit.edu	37	chr2	201448231	201448231	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaattttcaaagcataAggaatcaaaacagaaatata	5	5	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201448231	G	G	201448231	1	3	75	0	1	0	0	0	0	0	0	0	14330	87	3	5		5	SGOL2	2	201448231	3'UTR	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1214759	201448231	41751142	259	82219											
ABI2	10152	broad.mit.edu	37	chr2	204244895	204244895	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtggatattagaactatAcatttttgtgttgtttttta	7	2	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204244895	G	G	204244895	1	3	75	0	1	0	0	0	0	0	0	0	89	406	14	5		5	ABI2	2	204244895	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2796664	204244895	38954478	260	82220											
CTLA4	1493	broad.mit.edu	37	chr2	204732821	204732821	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggaggaggtgtttctcctAcctgggtttcatttgtttca	11	7	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204732821	T	T	204732821	1	4	75	0	1	0	0	0	0	0	0	0	4045	406	14	5		5	CTLA4	2	204732821	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	487926	204732821	38466552	261	82221											
NRP2	8828	broad.mit.edu	37	chr2	206614562	206614562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagaactgcagctttgagGatggtaagcacaaattgcct	13	7	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206614562	T	T	206614562	3	4	75	1	0	0	0	0	1	0	0	0	10756	1174	41	3	1969	3	NRP2	2	206614562	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1881741	206614562	36584811	262	82222											
ADAM23	8745	broad.mit.edu	37	chr2	207310091	207310091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcagatgaagacaataCattgcaacagaatagcagca	9	9	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207310091	A	A	207310091	3	1	75	1	0	0	0	0	1	0	0	0	245	478	17	3	281	3	ADAM23	2	207310091	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	695529	207310091	35889282	263	82223											
DYTN	391475	broad.mit.edu	37	chr2	207564817	207564817	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taaatcagtcagcaaactatCccaatacaccgtgtctgtcc	5	13	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207564817	G	G	207564817	1	3	75	0	1	0	0	0	0	0	0	0	4901	870	30	4		4	DYTN	2	207564817	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	254726	207564817	35634556	264	82224											
CRYGC	1420	broad.mit.edu	37	chr2	208993028	208993028	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcctcagcaggtattgccGcccccggtagttgggcagct	15	13	1	0	rs141474796		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208993028	A	A	208993028	3	1	75	1	0	0	0	0	1	0	0	0	3948	1086	38	4	104	4	CRYGC	2	208993028	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1428211	208993028	34206345	265	82225											
CPS1	1373	broad.mit.edu	37	chr2	211542409	211542409	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaaataagcgtattcacaGtgacatctgagatataaaag	9	5	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211542409	A	A	211542409	1	1	75	0	1	0	0	0	0	0	0	0	3855	1044	36	4		4	CPS1	2	211542409	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2549381	211542409	31656964	266	82226											
ERBB4	2066	broad.mit.edu	37	chr2	212251660	212251660	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgttctggggcaaacacGgtggggtcagcactgtacct	13	12	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212251660	T	T	212251660	2	4	75	1	0	0	0	0	0	0	0	1	5251	1103	39	1		1	ERBB4	2	212251660	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	709251	212251660	30947713	267	82227											
ERBB4	2066	broad.mit.edu	37	chr2	212569970	212569970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggtgtgagccacgatgCccagtcaatcttgtgtaatt	10	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212569970	A	A	212569970	1	1	75	0	1	0	0	0	0	0	0	0	5251	754	26	3		3	ERBB4	2	212569970	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	318310	212569970	30629403	268	82228											
ERBB4	2066	broad.mit.edu	37	chr2	212578255	212578255	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaataatctgagctaccaCtcaccttttgggcaaatgtc	6	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212578255	T	T	212578255	1	4	75	0	1	0	0	0	0	0	0	0	5251	580	20	4		4	ERBB4	2	212578255	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8285	212578255	30621118	269	82229											
FN1	2335	broad.mit.edu	37	chr2	216262661	216262661	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgattatgctttaaatagtGtaaactcttcagaaactgca	6	6	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216262661	A	A	216262661	1	1	75	0	1	0	0	0	0	0	0	0	6020	1392	48	4		4	FN1	2	216262661	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3684406	216262661	26936712	270	82230											
XRCC5	7520	broad.mit.edu	37	chr2	217006040	217006040	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgatttcagagattatttCaggtaagagaagaaggatga	11	4	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217006040	T	T	217006040	4	4	75	1	0	0	0	0	0	1	0	0	17583	827	29	4	1524	4	XRCC5	2	217006040	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	743379	217006040	26193333	271	82231											
TNS1	7145	broad.mit.edu	37	chr2	218701075	218701075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcccccattgtcttccCctcagccctcctgggtccaa	6	19	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218701075	A	A	218701075	1	1	75	0	1	0	0	0	0	0	0	0	16466	638	22	2		2	TNS1	2	218701075	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1695035	218701075	24498298	272	82232											
CCDC108	255101	broad.mit.edu	37	chr2	219888835	219888835	+	Frame_Shift_Del	DEL	C	-	-													gatgaggatgatctggtgggCcccgggtgccacaaggcccg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	219888835	-	-	219888835	7	5	75	1	0	1	0	1	0	0	0	0	2769	739	26	0	3364	0	CCDC108	2	219888835	Frame_Shift_Del	DEL	C	TCGA-17-Z046-01A-01W-0746-08	1187760	219888835	23310538	273	82233											
CCDC108	255101	broad.mit.edu	37	chr2	219895648	219895648	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggcaggtggccccagGgaaaatttagcctgtaacat	12	8	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219895648	A	A	219895648	1	1	75	0	1	0	0	0	0	0	0	0	2769	1247	43	4		4	CCDC108	2	219895648	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6813	219895648	23303725	274	82234											
FAM134A	79137	broad.mit.edu	37	chr2	220045408	220045408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttctgcgttcgagtctGctctggctgtgctgtgttgg	15	9	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220045408	T	T	220045408	3	4	75	1	0	0	0	0	1	0	0	0	5491	1319	46	3	590	3	FAM134A	2	220045408	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	149760	220045408	23153965	275	82235											
ATG9A	79065	broad.mit.edu	37	chr2	220089069	220089069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctccagctcgttgaagtGgcggaggtagcagcggccat	16	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220089069	A	A	220089069	3	1	75	1	0	0	0	0	1	0	0	0	1106	1348	47	4	1531	4	ATG9A	2	220089069	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	43661	220089069	23110304	276	82236											
ACCN4	55515	broad.mit.edu	37	chr2	220396448	220396448	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttggccactcctttcatCtcccctcctgctctctcacc	4	21	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220396448	A	A	220396448	1	1	75	0	1	0	0	0	0	0	0	0	131	928	32	3		3	ACCN4	2	220396448	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	307379	220396448	22802925	277	82237											
DOCK10	55619	broad.mit.edu	37	chr2	225658116	225658116	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcatgtggtcatcttaCcctttcttttcagatactct	4	13	6	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225658116	A	A	225658116	5	1	75	1	0	0	0	0	0	0	1	0	4725	521	18	3	1391	3	DOCK10	2	225658116	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5261668	225658116	17541257	278	82238											
SP140	11262	broad.mit.edu	37	chr2	231152696	231152696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaggtaaaaaagaaaacAggaatgaactttcaataact	7	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231152696	G	G	231152696	1	3	75	0	1	0	0	0	0	0	0	0	15076	203	7	5		5	SP140	2	231152696	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	5494580	231152696	12046677	279	82239											
UGT1A9	54600	broad.mit.edu	37	chr2	234581133	234581133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggtgcacagtgccctGctcctctttcctatgtcccc	8	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234581133	T	T	234581133	3	4	75	1	0	0	0	0	1	0	0	0	17078	1319	46	3	555	3	UGT1A9	2	234581133	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3428437	234581133	8618240	280	82240											
IQCA1	79781	broad.mit.edu	37	chr2	237253141	237253141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtagaggtaggccttGgtaagggcctcctttggagg	15	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237253141	T	T	237253141	1	4	75	0	1	0	0	0	0	0	0	0	7872	1363	47	2		2	IQCA1	2	237253141	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2672008	237253141	5946232	281	82241											
COL6A3	1293	broad.mit.edu	37	chr2	238275930	238275930	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtctgctttcttcttctCtagaagtgattaaagtgaaa	7	6	4	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238275930	A	A	238275930	5	1	75	1	0	0	0	0	0	0	1	0	3733	927	32	3	4769	3	COL6A3	2	238275930	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1022789	238275930	4923443	282	82242											
LRRFIP1	9208	broad.mit.edu	37	chr2	238683108	238683108	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggaaactccaaagagaggtAaatttcctaggcaatttcta	8	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238683108	T	T	238683108	1	4	75	0	1	0	0	0	0	0	0	0	9114	377	13	5		5	LRRFIP1	2	238683108	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	407178	238683108	4516265	283	82243											
CHL1	10752	broad.mit.edu	37	chr3	369898	369898	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttatttcactgaccatcgGataattccatcgaacaattc	4	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	369898	T	T	369898	2	4	75	1	0	0	0	0	0	0	0	1	3380	1161	41	3		3	CHL1	3	369898	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08		369898	197652532	284	82244											
CNTN6	27255	broad.mit.edu	37	chr3	1189723	1189723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggaaactggtaattctgCtgccactcataaactcttct	6	10	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1189723	A	A	1189723	3	1	75	1	0	0	0	0	1	0	0	0	3677	796	28	3	33	3	CNTN6	3	1189723	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	819825	1189723	196832707	285	82245											
CNTN4	152330	broad.mit.edu	37	chr3	3095550	3095550	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaaacaaataaaacatcGgtggagctttctttgccttt	7	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3095550	T	T	3095550	2	4	75	1	0	0	0	0	0	0	0	1	3675	1103	39	1		1	CNTN4	3	3095550	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1905827	3095550	194926880	286	82246											
IL5RA	3568	broad.mit.edu	37	chr3	3143539	3143539	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaataaaacccacaagtcatGatacataaaagagaactaga	5	7	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3143539	T	T	3143539	1	4	75	0	1	0	0	0	0	0	0	0	7770	1305	45	3		3	IL5RA	3	3143539	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	47989	3143539	194878891	287	82247											
ITPR1	3708	broad.mit.edu	37	chr3	4775016	4775016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatgaatttgtgttgcaGgtgtattttttagcaacttg	10	4	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4775016	T	T	4775016	1	4	75	0	1	0	0	0	0	0	0	0	7990	1015	35	2		2	ITPR1	3	4775016	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1631477	4775016	193247414	288	82248											
LHFPL4	375323	broad.mit.edu	37	chr3	9547772	9547772	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccaggatgtatgcccaGcgcactgaacagtcccccag	11	14	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9547772	T	T	9547772	2	4	75	1	0	0	0	0	0	0	0	1	8839	958	34	3		3	LHFPL4	3	9547772	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4772756	9547772	188474658	289	82249											
PPARG	5468	broad.mit.edu	37	chr3	12422846	12422846	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaaagtggagcctgcatcTccaccttattattctgagaa	7	10	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12422846	A	A	12422846	2	1	75	1	0	0	0	0	0	0	0	1	12395	1538	54	5		5	PPARG	3	12422846	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2875074	12422846	185599584	290	82250											
C3orf20	84077	broad.mit.edu	37	chr3	14744888	14744888	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtgtgagacatgccacCtgggagcgtgggttatgtgg	17	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14744888	T	T	14744888	1	4	75	0	1	0	0	0	0	0	0	0	2235	696	24	4		4	C3orf20	3	14744888	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2322042	14744888	183277542	291	82251											
EFHB	151651	broad.mit.edu	37	chr3	19962097	19962097	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttgatcattgccagggtGgaagaggagcattttgaaga	16	4	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19962097	A	A	19962097	1	1	75	0	1	0	0	0	0	0	0	0	4985	1363	47	4		4	EFHB	3	19962097	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5217209	19962097	178060333	292	82252											
ZNF385D	79750	broad.mit.edu	37	chr3	21605926	21605926	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactccaaaattaaagcacAtagtgagttaaaatgttatc	5	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21605926	C	C	21605926	1	2	75	0	1	0	0	0	0	0	0	0	18004	232	8	5		5	ZNF385D	3	21605926	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1643829	21605926	176416504	293	82253											
DLEC1	9940	broad.mit.edu	37	chr3	38126915	38126915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgatccccctgcaggcccGgaggccgccccccgtgctga	12	19	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38126915	T	T	38126915	3	4	75	1	0	0	0	0	1	0	0	0	4592	1116	39	1	1442	1	DLEC1	3	38126915	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	16520989	38126915	159895515	294	82254											
ACVR2B	93	broad.mit.edu	37	chr3	38519169	38519169	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttagccctgaggaggggtCtcagtgtcaacccctggctg	13	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38519169	T	T	38519169	1	4	75	0	1	0	0	0	0	0	0	0	224	928	32	4		4	ACVR2B	3	38519169	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	392254	38519169	159503261	295	82255											
SCN10A	6336	broad.mit.edu	37	chr3	38766852	38766852	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctggccccacccttagatGaccagttctaaatttgaagg	9	12	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38766852	T	T	38766852	1	4	75	0	1	0	0	0	0	0	0	0	14025	1305	45	3		3	SCN10A	3	38766852	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	247683	38766852	159255578	296	82256											
SCN10A	6336	broad.mit.edu	37	chr3	38768368	38768368	+	Missense_Mutation	SNP	G	A	A													caggctctgccttgggctggGggaatgggcaggacctgctg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38768368	A	A	38768368	3	1	75	1	0	0	0	0	1	0	0	0	14025	1232	43	4	3102	4	SCN10A	3	38768368	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1516	38768368	159254062	297	82257	376	2									
SCN10A	6336	broad.mit.edu	37	chr3	38768370	38768370	+	Silent	SNP	G	A	A													ggctctgccttgggctggggGaatgggcaggacctgctgaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38768370	A	A	38768370	2	1	75	1	0	0	0	0	0	0	0	1	14025	1165	41	4		4	SCN10A	3	38768370	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2	38768370	159254060	298	82258	376	2									
MYL3	4634	broad.mit.edu	37	chr3	46900951	46900951	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggagttggggtaggggagGaggctgccctcacccagcgt	18	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46900951	T	T	46900951	1	4	75	0	1	0	0	0	0	0	0	0	10142	1189	41	3		3	MYL3	3	46900951	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	8132581	46900951	151121479	299	82259											
IQCF1	132141	broad.mit.edu	37	chr3	51937288	51937288	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctggctttctcttaccaTtggtcacatatggattgatt	8	8	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51937288	A	A	51937288	3	1	75	1	0	0	0	0	1	0	0	0	7877	1493	52	5	632	5	IQCF1	3	51937288	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	5036337	51937288	146085142	300	82260											
DNAH1	25981	broad.mit.edu	37	chr3	52422303	52422303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctgccagtgggtgcgcGccatgcacaagtaccacttt	10	14	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52422303	T	T	52422303	3	4	75	1	0	0	0	0	1	0	0	0	4637	1087	38	3	9346	3	DNAH1	3	52422303	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	485015	52422303	145600127	301	82261											
FAM19A1	407738	broad.mit.edu	37	chr3	68194165	68194165	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgaagatgccagtggcGgtgatggcagaaagcgcctt	16	9	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68194165	A	A	68194165	1	1	75	0	1	0	0	0	0	0	0	0	5578	1131	39	4		4	FAM19A1	3	68194165	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	15771862	68194165	129828265	302	82262											
ARL6IP5	10550	broad.mit.edu	37	chr3	69150988	69150988	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcttcctcatatttcAggtttctgagtcccttcaac	4	11	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69150988	T	T	69150988	5	4	75	1	0	0	0	0	0	0	1	0	948	202	7	5	181	5	ARL6IP5	3	69150988	Splice_Site	SNP	A	TCGA-17-Z046-01A-01W-0746-08	956823	69150988	128871442	303	82263											
RYBP	23429	broad.mit.edu	37	chr3	72427979	72427979	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataatccaacaagcacggaTagcaaagcttgggaccaatg	9	9	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72427979	C	C	72427979	1	2	75	0	1	0	0	0	0	0	0	0	13877	1421	49	5		5	RYBP	3	72427979	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	3276991	72427979	125594451	304	82264											
CNTN3	5067	broad.mit.edu	37	chr3	74418580	74418580	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaagccttttcaacttgaGaaaataaagcttttaagatt	7	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74418580	T	T	74418580	1	4	75	0	1	0	0	0	0	0	0	0	3674	957	33	3		3	CNTN3	3	74418580	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1990601	74418580	123603850	305	82265											
EPHA3	2042	broad.mit.edu	37	chr3	89499497	89499497	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggaatcccggcagcctgaaGatcatcaccagtgcagccgc	11	15	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89499497	T	T	89499497	3	4	75	1	0	0	0	0	1	0	0	0	5210	933	33	3	2751	3	EPHA3	3	89499497	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	15080917	89499497	108522933	306	82266											
EPHA6	285220	broad.mit.edu	37	chr3	97202786	97202786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgttgcagtgcgcttcCcgggaattaaaacttacatt	9	8	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97202786	A	A	97202786	3	1	75	1	0	0	0	0	1	0	0	0	5213	623	22	2	2189	2	EPHA6	3	97202786	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7703289	97202786	100819644	307	82267											
TBC1D23	55773	broad.mit.edu	37	chr3	99979835	99979835	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcagcgccggatccacttttCggcaaagtgacgtggacgtc	12	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99979835	G	G	99979835	1	3	75	0	1	0	0	0	0	0	0	0	15732	899	31	4		4	TBC1D23	3	99979835	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2777049	99979835	98042595	308	82268											
TBC1D23	55773	broad.mit.edu	37	chr3	100023809	100023809	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatcaatagagttgatctgGagtggtcacattagttaaag	10	4	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100023809	T	T	100023809	1	4	75	0	1	0	0	0	0	0	0	0	15732	1189	41	3		3	TBC1D23	3	100023809	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	43974	100023809	97998621	309	82269											
ABI3BP	25890	broad.mit.edu	37	chr3	100569718	100569718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggcccacattttaaaaCtagtgatacatcaggagttg	9	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100569718	A	A	100569718	1	1	75	0	1	0	0	0	0	0	0	0	91	580	20	3		3	ABI3BP	3	100569718	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	545909	100569718	97452712	310	82270											
CEP97	79598	broad.mit.edu	37	chr3	101484051	101484051	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcagatttaggggatgttAgtgaagaacatggtgaatgg	14	2	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101484051	G	G	101484051	3	3	75	1	0	0	0	0	1	0	0	0	3293	420	15	5	2296	5	CEP97	3	101484051	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	914333	101484051	96538379	311	82271											
ALCAM	214	broad.mit.edu	37	chr3	105271084	105271084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcaagatttatgaagtGtcatggtataagtaattttc	8	5	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105271084	T	T	105271084	1	4	75	0	1	0	0	0	0	0	0	0	487	1392	48	3		3	ALCAM	3	105271084	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3787033	105271084	92751346	312	82272											
DZIP3	9666	broad.mit.edu	37	chr3	108347820	108347820	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatcaccaccctatttaccAcaaaaaaagggttatttgtt	4	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108347820	G	G	108347820	1	3	75	0	1	0	0	0	0	0	0	0	4905	174	6	5		5	DZIP3	3	108347820	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3076736	108347820	89674610	313	82273											
DZIP3	9666	broad.mit.edu	37	chr3	108392862	108392862	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatttacttgagatgattgaGaagagaatgttcctttacaa	8	4	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108392862	T	T	108392862	1	4	75	0	1	0	0	0	0	0	0	0	4905	957	33	3		3	DZIP3	3	108392862	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	45042	108392862	89629568	314	82274											
RETNLB	84666	broad.mit.edu	37	chr3	108475248	108475248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgactcagccccagggtGccagggtgatacagacctga	12	12	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108475248	A	A	108475248	1	1	75	0	1	0	0	0	0	0	0	0	13345	1334	46	4		4	RETNLB	3	108475248	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	82386	108475248	89547182	315	82275											
CD200R1L	344807	broad.mit.edu	37	chr3	112538721	112538721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcagtaaggacaacgctGgagatcctgaggttctgaga	13	7	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112538721	T	T	112538721	3	4	75	1	0	0	0	0	1	0	0	0	3012	1348	47	2	122	2	CD200R1L	3	112538721	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4063473	112538721	85483709	316	82276											
ZNF80	7634	broad.mit.edu	37	chr3	113955337	113955337	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcggtaggtgaaggtcttCccgcactcactgcacttgca	12	12	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113955337	T	T	113955337	2	4	75	1	0	0	0	0	0	0	0	1	18297	842	30	4		4	ZNF80	3	113955337	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1416616	113955337	84067093	317	82277											
LSAMP	4045	broad.mit.edu	37	chr3	115560673	115560673	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaattccatcaagttgggcCctgctttggcatacttactg	8	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115560673	T	T	115560673	1	4	75	0	1	0	0	0	0	0	0	0	9135	638	22	4		4	LSAMP	3	115560673	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1605336	115560673	82461757	318	82278											
IGSF11	152404	broad.mit.edu	37	chr3	118648810	118648810	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgataagtgactgatAgggcagaggagtaggcctta	13	6	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118648810	T	T	118648810	1	4	75	0	1	0	0	0	0	0	0	0	7668	435	15	5		5	IGSF11	3	118648810	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3088137	118648810	79373620	319	82279											
ADCY5	111	broad.mit.edu	37	chr3	123066493	123066493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctggaggggtggggctGgcatgctctagatgacacac	15	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123066493	T	T	123066493	1	4	75	0	1	0	0	0	0	0	0	0	297	1363	47	2		2	ADCY5	3	123066493	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4417683	123066493	74955937	320	82280											
MYLK	4638	broad.mit.edu	37	chr3	123385993	123385993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggccaattacctgccttcgGaggtgtcttgggggcaggtt	15	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123385993	T	T	123385993	3	4	75	1	0	0	0	0	1	0	0	0	10150	1174	41	3	2106	3	MYLK	3	123385993	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	319500	123385993	74636437	321	82281											
KALRN	8997	broad.mit.edu	37	chr3	124113928	124113928	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagcttccttgccctcacccCagccctggcctctcccatct	5	21	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124113928	G	G	124113928	1	3	75	0	1	0	0	0	0	0	0	0	8045	609	21	4		4	KALRN	3	124113928	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	727935	124113928	73908502	322	82282											
ZNF148	7707	broad.mit.edu	37	chr3	124953081	124953081	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagtattcacactggtaagGtttttctccactatgagttc	7	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124953081	C	C	124953081	3	2	75	1	0	0	0	0	1	0	0	0	17860	1261	44	4	1632	4	ZNF148	3	124953081	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	839153	124953081	73069349	323	82283											
RHO	6010	broad.mit.edu	37	chr3	129251465	129251465	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcatggtcatcgctttcctGatctgctgggtgccctacgc	10	13	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129251465	T	T	129251465	2	4	75	1	0	0	0	0	0	0	0	1	13439	1277	45	3		3	RHO	3	129251465	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4298384	129251465	68770965	324	82284											
COL6A6	131873	broad.mit.edu	37	chr3	130284367	130284367	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaccttcgctgacctggcTgctcacaaccagacatttct	7	14	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130284367	C	C	130284367	2	2	75	1	0	0	0	0	0	0	0	1	3735	1567	55	5		5	COL6A6	3	130284367	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1032902	130284367	67738063	325	82285											
DNAJC13	23317	broad.mit.edu	37	chr3	132180075	132180075	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcttgtatttttcttgtcaGataacagtgaatttaaggga	9	4	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132180075	T	T	132180075	1	4	75	0	1	0	0	0	0	0	0	0	4672	957	33	3		3	DNAJC13	3	132180075	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1895708	132180075	65842355	326	82286											
CLSTN2	64084	broad.mit.edu	37	chr3	140123684	140123684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaagacccaacatgggCtctgaatatgcttggcaagt	10	10	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140123684	A	A	140123684	1	1	75	0	1	0	0	0	0	0	0	0	3594	812	28	3		3	CLSTN2	3	140123684	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7943609	140123684	57898746	327	82287											
CLSTN2	64084	broad.mit.edu	37	chr3	140178166	140178166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtctgtaagttactgatGcctccccaagaaaaccataa	6	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140178166	T	T	140178166	1	4	75	0	1	0	0	0	0	0	0	0	3594	1334	46	3		3	CLSTN2	3	140178166	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	54482	140178166	57844264	328	82288											
SLC9A9	285195	broad.mit.edu	37	chr3	143551051	143551051	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagcatatcgtaaaattagtCccattataaggcctaaaaaa	5	7	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143551051	G	G	143551051	3	3	75	1	0	0	0	0	1	0	0	0	14835	855	30	4	1809	4	SLC9A9	3	143551051	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3372885	143551051	54471379	329	82289											
ZIC4	84107	broad.mit.edu	37	chr3	147106793	147106793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctacttcaggaagggggaCtttttaaacattggcagaag	11	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147106793	A	A	147106793	1	1	75	0	1	0	0	0	0	0	0	0	17807	580	20	3		3	ZIC4	3	147106793	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3555742	147106793	50915637	330	82290											
MME	4311	broad.mit.edu	37	chr3	154834707	154834707	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaactgaattctaaatatGggaaaaaagtccttattaat	5	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154834707	T	T	154834707	3	4	75	1	0	0	0	0	1	0	0	0	9738	1348	47	2	608	2	MME	3	154834707	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7727914	154834707	43187723	331	82291											
MME	4311	broad.mit.edu	37	chr3	154858048	154858048	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagatgacattggcccagatCcaaaataacttttcactaga	6	9	1	4	rs150252105		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154858048	A	A	154858048	2	1	75	1	0	0	0	0	0	0	0	1	9738	845	30	3		3	MME	3	154858048	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	23341	154858048	43164382	332	82292											
GFM1	85476	broad.mit.edu	37	chr3	158378867	158378867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaccacagaagttttcGttgagtaccacagtcatcaa	6	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158378867	T	T	158378867	1	4	75	0	1	0	0	0	0	0	0	0	6405	1160	40	3		3	GFM1	3	158378867	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3520819	158378867	39643563	333	82293											
PPM1L	151742	broad.mit.edu	37	chr3	160783243	160783243	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagacctcactgtggccaaCgtgggtgactcgcgcggggt	15	11	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160783243	T	T	160783243	2	4	75	1	0	0	0	0	0	0	0	1	12445	535	19	4		4	PPM1L	3	160783243	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2404376	160783243	37239187	334	82294											
SI	6476	broad.mit.edu	37	chr3	164700791	164700791	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataaataatcttacataccTggtttaaattaaattgtaca	3	5	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164700791	A	A	164700791	3	1	75	1	0	0	0	0	1	0	0	0	14410	1594	55	5	249	5	SI	3	164700791	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	3917548	164700791	33321639	335	82295											
SI	6476	broad.mit.edu	37	chr3	164757594	164757594	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccactgagtaacatctaTtattcagatgttttgtaatg	7	6	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164757594	C	C	164757594	1	2	75	0	1	0	0	0	0	0	0	0	14410	1508	52	5		5	SI	3	164757594	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	56803	164757594	33264836	336	82296											
SLITRK3	22865	broad.mit.edu	37	chr3	164907949	164907949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagctggagctccatcaGgcttctgccaatgtgatcta	9	12	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164907949	T	T	164907949	3	4	75	1	0	0	0	0	1	0	0	0	14858	991	35	2	2267	2	SLITRK3	3	164907949	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	150355	164907949	33114481	337	82297											
WDR49	151790	broad.mit.edu	37	chr3	167196625	167196625	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgctttttctgcattttaTatctgtaccttatgtaacag	6	7	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167196625	C	C	167196625	1	2	75	0	1	0	0	0	0	0	0	0	17429	1421	49	5		5	WDR49	3	167196625	3'UTR	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2288676	167196625	30825805	338	82298											
SERPINI1	5274	broad.mit.edu	37	chr3	167512697	167512697	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaaactcttcgaactgCtttcgaattataattcttgt	5	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167512697	T	T	167512697	1	4	75	0	1	0	0	0	0	0	0	0	14231	812	28	4		4	SERPINI1	3	167512697	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	316072	167512697	30509733	339	82299											
SPATA16	83893	broad.mit.edu	37	chr3	172607310	172607310	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcattggagtggatgccCttgcctcttcttctgggata	13	9	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172607310	A	A	172607310	1	1	75	0	1	0	0	0	0	0	0	0	15117	696	24	2		2	SPATA16	3	172607310	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5094613	172607310	25415120	340	82300											
SPATA16	83893	broad.mit.edu	37	chr3	172643148	172643148	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatttacctgtgaatatcgGcagcttcctgcttgatattt	8	8	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172643148	A	A	172643148	3	1	75	1	0	0	0	0	1	0	0	0	15117	1203	42	4	513	4	SPATA16	3	172643148	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	35838	172643148	25379282	341	82301											
TTC14	151613	broad.mit.edu	37	chr3	180328339	180328339	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaaattaatacaccaaGgatatcggcaccattacaca	4	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180328339	T	T	180328339	1	4	75	0	1	0	0	0	0	0	0	0	16807	1015	35	2		2	TTC14	3	180328339	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7685191	180328339	17694091	342	82302											
HTR3D	200909	broad.mit.edu	37	chr3	183754201	183754201	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtctcatggctagtatgtCaatagtgaaggccacatcaa	10	8	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183754201	T	T	183754201	3	4	75	1	0	0	0	0	1	0	0	0	7517	838	29	4	530	4	HTR3D	3	183754201	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3425862	183754201	14268229	343	82303											
DNAJB11	51726	broad.mit.edu	37	chr3	186299931	186299931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcttgtttgtgaataCctttcacccctgccttactc	5	14	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186299931	T	T	186299931	1	4	75	0	1	0	0	0	0	0	0	0	4656	522	18	4		4	DNAJB11	3	186299931	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2545730	186299931	11722499	344	82304											
RTP2	344892	broad.mit.edu	37	chr3	187416470	187416470	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcttctcgctgggcttcCagtgaacgatgccctcctgg	12	14	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187416470	T	T	187416470	4	4	75	1	0	0	0	0	0	1	0	0	13845	595	21	4	187	4	RTP2	3	187416470	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1116539	187416470	10605960	345	82305											
TP63	8626	broad.mit.edu	37	chr3	189606907	189606907	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggaggaaagagattgttctCggacaaggtacaaaagtcaa	13	5	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189606907	T	T	189606907	1	4	75	0	1	0	0	0	0	0	0	0	16516	899	31	4		4	TP63	3	189606907	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2190437	189606907	8415523	346	82306											
CCDC50	152137	broad.mit.edu	37	chr3	191098559	191098559	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgatattctttggaaatatCctagtatatttctatctgca	5	7	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191098559	T	T	191098559	1	4	75	0	1	0	0	0	0	0	0	0	2848	870	30	4		4	CCDC50	3	191098559	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1491652	191098559	6923871	347	82307											
GP5	2814	broad.mit.edu	37	chr3	194117584	194117584	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggggcggggaggcgggccCcgggggcccgggcactccgc	23	15	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194117584	T	T	194117584	2	4	75	1	0	0	0	0	0	0	0	1	6648	610	22	4		4	GP5	3	194117584	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3019025	194117584	3904846	348	82308											
MUC4	4585	broad.mit.edu	37	chr3	195516952	195516952	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcagttctgtttgtgacCaagttgtgtggcctttgctg	14	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195516952	T	T	195516952	4	4	75	1	0	0	0	0	0	1	0	0	10072	595	21	4		4	MUC4	3	195516952	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1399368	195516952	2505478	349	82309											
TNK2	10188	broad.mit.edu	37	chr3	195594873	195594873	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacagctggacgtgtgggcGcgtgggccgaggggggatgg	23	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195594873	C	C	195594873	3	2	75	1	0	0	0	0	1	0	0	0	16441	1087	38	4	881	4	TNK2	3	195594873	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	77921	195594873	2427557	350	82310											
MFI2	4241	broad.mit.edu	37	chr3	196743162	196743162	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaagctccgaggtagagtCtttgaagagtagatccttct	10	9	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196743162	T	T	196743162	3	4	75	1	0	0	0	0	1	0	0	0	9615	913	32	4	1273	4	MFI2	3	196743162	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1148289	196743162	1279268	351	82311											
ZNF595	152687	broad.mit.edu	37	chr4	53555	53555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccccgcacggcggctctGgcccagcctgcggccctcct	13	20	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53555	T	T	53555	1	4	75	0	1	0	0	0	0	0	0	0	18152	1363	47	2		2	ZNF595	4	53555	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08		53555	191100721	352	82312											
RNF212	285498	broad.mit.edu	37	chr4	1066622	1066622	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacacagaggaataaatTgaaaacactcagaatcatta	5	6	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1066622	G	G	1066622	1	3	75	0	1	0	0	0	0	0	0	0	13587	1827	63	5		5	RNF212	4	1066622	3'UTR	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1013067	1066622	190087654	353	82313											
GRK4	2868	broad.mit.edu	37	chr4	3029749	3029749	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcgtgagaggctttcggcGtccttgtcctttctatccgg	12	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3029749	A	A	3029749	1	1	75	0	1	0	0	0	0	0	0	0	6857	1160	40	4		4	GRK4	4	3029749	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1963127	3029749	188124527	354	82314											
JAKMIP1	152789	broad.mit.edu	37	chr4	6083476	6083476	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacctcggtctctcgtgagcGtttcagctgtggttggaaac	12	10	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6083476	C	C	6083476	3	2	75	1	0	0	0	0	1	0	0	0	8010	1145	40	4	1673	4	JAKMIP1	4	6083476	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3053727	6083476	185070800	355	82315											
CPZ	8532	broad.mit.edu	37	chr4	8609222	8609222	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccttggagctggtgccccTccagtcctgagctcagtgaa	11	15	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8609222	C	C	8609222	1	2	75	0	1	0	0	0	0	0	0	0	3871	1566	54	5		5	CPZ	4	8609222	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2525746	8609222	182545054	356	82316											
SLC2A9	56606	broad.mit.edu	37	chr4	9998724	9998724	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggcctcttctaacaaattTtgggaagagcagaagatgtt	10	6	2	3	rs145495607	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9998724	A	A	9998724	1	1	75	0	1	0	0	0	0	0	0	0	14666	1856	64	5		5	SLC2A9	4	9998724	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1389502	9998724	181155552	357	82317											
UBE2K	3093	broad.mit.edu	37	chr4	39772780	39772780	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccctaacagcgaattccAgggtgcccgtgtagcaggag	13	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39772780	G	G	39772780	1	3	75	0	1	0	0	0	0	0	0	0	16988	203	7	5		5	UBE2K	4	39772780	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	29774056	39772780	151381496	358	82318											
BEND4	389206	broad.mit.edu	37	chr4	42127507	42127507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagtcaaaaactattttGctagccagtctgttctggta	7	10	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42127507	T	T	42127507	1	4	75	0	1	0	0	0	0	0	0	0	1405	1334	46	3		3	BEND4	4	42127507	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2354727	42127507	149026769	359	82319											
FRYL	285527	broad.mit.edu	37	chr4	48549688	48549688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctgagaaggacagaagCaacagttcggatgttactat	11	7	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48549688	A	A	48549688	3	1	75	1	0	0	0	0	1	0	0	0	6124	710	25	3	4150	3	FRYL	4	48549688	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6422181	48549688	142604588	360	82320											
FRYL	285527	broad.mit.edu	37	chr4	48566015	48566015	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcagccggccgccaccctCccggagcccgtgtagcagcg	13	18	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48566015	A	A	48566015	2	1	75	1	0	0	0	0	0	0	0	1	6124	842	30	3		3	FRYL	4	48566015	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	16327	48566015	142588261	361	82321											
PDGFRA	5156	broad.mit.edu	37	chr4	55144722	55144722	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgtctatcattatcttAcaggcatcacaaatggaaag	7	8	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55144722	T	T	55144722	1	4	75	0	1	0	0	0	0	0	0	0	11755	406	14	5		5	PDGFRA	4	55144722	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	6578707	55144722	136009554	362	82322											
KIT	3815	broad.mit.edu	37	chr4	55564616	55564616	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattcctgaccccaaggcGggcatcatgatcaaaagtgt	9	10	2	2	rs140469176	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55564616	T	T	55564616	2	4	75	1	0	0	0	0	0	0	0	1	8400	1103	39	1		1	KIT	4	55564616	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	419894	55564616	135589660	363	82323											
KIAA1211	57482	broad.mit.edu	37	chr4	57181702	57181702	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtccagaatcctgaagaaCgcagagagtgacccgcgcag	13	12	0	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57181702	T	T	57181702	2	4	75	1	0	0	0	0	0	0	0	1	8285	535	19	4		4	KIAA1211	4	57181702	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1617086	57181702	133972574	364	82324											
KIAA1211	57482	broad.mit.edu	37	chr4	57189711	57189711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagagaggccaaacaggCagaaaagctctccaaagaaa	10	10	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57189711	A	A	57189711	3	1	75	1	0	0	0	0	1	0	0	0	8285	710	25	3	3378	3	KIAA1211	4	57189711	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8009	57189711	133964565	365	82325											
PPAT	5471	broad.mit.edu	37	chr4	57272855	57272855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtaaagacgtgatttaCaagacccattcccttgagaa	7	9	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57272855	A	A	57272855	3	1	75	1	0	0	0	0	1	0	0	0	12398	478	17	3	1381	3	PPAT	4	57272855	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	83144	57272855	133881421	366	82326											
LPHN3	23284	broad.mit.edu	37	chr4	62679654	62679654	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaactctgctcattctttGatgaaagcaatgatggttgt	9	6	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62679654	A	A	62679654	1	1	75	0	1	0	0	0	0	0	0	0	9004	1305	45	4		4	LPHN3	4	62679654	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5406799	62679654	128474622	367	82327											
TECRL	253017	broad.mit.edu	37	chr4	65180333	65180333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtg	21	0	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65180333	T	T	65180333	1	4	75	0	1	0	0	0	0	0	0	0	15868	1392	48	3		3	TECRL	4	65180333	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2500679	65180333	125973943	368	82328											
EPHA5	2044	broad.mit.edu	37	chr4	66230964	66230964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaaactcatttgaaattGttagtctattaacacttgta	5	6	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66230964	T	T	66230964	1	4	75	0	1	0	0	0	0	0	0	0	5212	1392	48	3		3	EPHA5	4	66230964	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1050631	66230964	124923312	369	82329											
UGT2A3	79799	broad.mit.edu	37	chr4	69811051	69811051	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagctttggcaggtttacaGtgcaatcctccaacaaactc	7	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69811051	C	C	69811051	3	2	75	1	0	0	0	0	1	0	0	0	17081	1020	36	4	766	4	UGT2A3	4	69811051	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3580087	69811051	121343225	370	82330											
UGT2B10	7365	broad.mit.edu	37	chr4	69885299	69885299	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaccaaaaactccacttccTtgactttatggctttgtaca	4	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69885299	C	C	69885299	1	2	75	0	1	0	0	0	0	0	0	0	17082	1624	56	5		5	UGT2B10	4	69885299	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	74248	69885299	121268977	371	82331											
ENAM	10117	broad.mit.edu	37	chr4	71508496	71508496	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacaaataatagttcctacAaagaatccaaccagcccctg	5	12	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71508496	G	G	71508496	2	3	75	1	0	0	0	0	0	0	0	1	5154	117	5	5		5	ENAM	4	71508496	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1623197	71508496	119645780	372	82332											
ENAM	10117	broad.mit.edu	37	chr4	71509106	71509106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagtcccttataatgaagagGacccagttgatccaactgga	9	9	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71509106	T	T	71509106	3	4	75	1	0	0	0	0	1	0	0	0	5154	1174	41	3	1993	3	ENAM	4	71509106	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	610	71509106	119645170	373	82333											
ADAMTS3	9508	broad.mit.edu	37	chr4	73171612	73171612	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatacgtatgcacatatatgTgtacatatatacatatctat	4	6	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73171612	A	A	73171612	1	1	75	0	1	0	0	0	0	0	0	0	267	1711	59	5		5	ADAMTS3	4	73171612	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1662506	73171612	117982664	374	82334											
ADAMTS3	9508	broad.mit.edu	37	chr4	73176824	73176824	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaagaacagtgcgttccatCatgcaccagttgtttcatgt	9	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73176824	T	T	73176824	3	4	75	1	0	0	0	0	1	0	0	0	267	826	29	4	1657	4	ADAMTS3	4	73176824	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5212	73176824	117977452	375	82335											
COX18	285521	broad.mit.edu	37	chr4	73930566	73930566	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtcgggtgcagtgaggtCaggaaaccacagaattccac	14	9	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73930566	A	A	73930566	3	1	75	1	0	0	0	0	1	0	0	0	3799	826	29	3	364	3	COX18	4	73930566	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	753742	73930566	117223710	376	82336											
PPEF2	5470	broad.mit.edu	37	chr4	76805935	76805935	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcaacaaggagaccagtGaaagaatgaatgggaggaag	13	4	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76805935	A	A	76805935	1	1	75	0	1	0	0	0	0	0	0	0	12404	1305	45	4		4	PPEF2	4	76805935	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2875369	76805935	114348341	377	82337											
FRAS1	80144	broad.mit.edu	37	chr4	79360078	79360078	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcagctgtgtttgaaactGatggtcatctggttactgat	10	7	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79360078	T	T	79360078	3	4	75	1	0	0	0	0	1	0	0	0	6102	1290	45	3	5547	3	FRAS1	4	79360078	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2554143	79360078	111794198	378	82338											
SEC31A	22872	broad.mit.edu	37	chr4	83788320	83788320	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctattaccttgtcaacttgTttctgtcttaaaccatctgt	4	11	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83788320	A	A	83788320	3	1	75	1	0	0	0	0	1	0	0	0	14111	1722	60	5	2706	5	SEC31A	4	83788320	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4428242	83788320	107365956	379	82339											
AFF1	4299	broad.mit.edu	37	chr4	88029500	88029500	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctcgagatggccaccttaGatggcagcattctgtccttt	9	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88029500	C	C	88029500	1	2	75	0	1	0	0	0	0	0	0	0	356	957	33	4		4	AFF1	4	88029500	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4241180	88029500	103124776	380	82340											
IBSP	3381	broad.mit.edu	37	chr4	88732021	88732021	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagtctaagggtatcctaaCactacacacatagtatttta	7	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88732021	G	G	88732021	1	3	75	0	1	0	0	0	0	0	0	0	7545	493	17	4		4	IBSP	4	88732021	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	702521	88732021	102422255	381	82341											
MEPE	56955	broad.mit.edu	37	chr4	88766209	88766209	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagctatcatctaaagaaaaTattgtccaggaaagaaagaa	8	5	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88766209	C	C	88766209	2	2	75	1	0	0	0	0	0	0	0	1	9571	1403	49	5		5	MEPE	4	88766209	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	34188	88766209	102388067	382	82342											
GRID2	2895	broad.mit.edu	37	chr4	93511233	93511233	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcatatttccagaggggatGacagaatatttatgttatta	9	4	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93511233	A	A	93511233	1	1	75	0	1	0	0	0	0	0	0	0	6838	1305	45	4		4	GRID2	4	93511233	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4745024	93511233	97643043	383	82343											
SMARCAD1	56916	broad.mit.edu	37	chr4	95204271	95204271	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaatttgtttatcttacaGgattcatctaattgatgagt	6	6	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95204271	T	T	95204271	5	4	75	1	0	0	0	0	0	0	1	0	14886	1014	35	2	2814	2	SMARCAD1	4	95204271	Splice_Site	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1693038	95204271	95950005	384	82344											
ADH1A	124	broad.mit.edu	37	chr4	100205475	100205475	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaatctacaaaaataatcttCgattcttgtgagacattcct	4	8	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100205475	T	T	100205475	1	4	75	0	1	0	0	0	0	0	0	0	307	899	31	4		4	ADH1A	4	100205475	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5001204	100205475	90948801	385	82345											
MTTP	4547	broad.mit.edu	37	chr4	100532536	100532536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctagacattctctactcgGgttctggcattctaaggaga	10	10	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100532536	T	T	100532536	3	4	75	1	0	0	0	0	1	0	0	0	10058	1232	43	2	1969	2	MTTP	4	100532536	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	327061	100532536	90621740	386	82346											
SLC39A8	64116	broad.mit.edu	37	chr4	103189107	103189107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagacaaggtgcaggaagCcccaatcgccaggccatcga	13	12	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103189107	A	A	103189107	3	1	75	1	0	0	0	0	1	0	0	0	14738	739	26	3	501	3	SLC39A8	4	103189107	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2656571	103189107	87965169	387	82347											
NHEDC1	150159	broad.mit.edu	37	chr4	103822408	103822408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatggctaaaaatgctaCtgtcatcacatccttcgcat	6	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103822408	A	A	103822408	3	1	75	1	0	0	0	0	1	0	0	0	10495	565	20	3	237	3	NHEDC1	4	103822408	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	633301	103822408	87331868	388	82348											
CXXC4	80319	broad.mit.edu	37	chr4	105412248	105412248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccctaaagccgggatagCggaaaaagtccccacgcgct	11	15	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105412248	T	T	105412248	3	4	75	1	0	0	0	0	1	0	0	0	4131	768	27	4	399	4	CXXC4	4	105412248	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1589840	105412248	85742028	389	82349											
TET2	54790	broad.mit.edu	37	chr4	106155526	106155526	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagtcaaccaaatgtctccGatttgagtgataagaaagaa	9	7	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106155526	A	A	106155526	3	1	75	1	0	0	0	0	1	0	0	0	15892	1058	37	4	429	4	TET2	4	106155526	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	743278	106155526	84998750	390	82350											
AIMP1	9255	broad.mit.edu	37	chr4	107246266	107246266	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcaagtttctctacttaagGagaaagcaagtaagaaaatt	8	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107246266	C	C	107246266	3	2	75	1	0	0	0	0	1	0	0	0	433	1175	41	4	178	4	AIMP1	4	107246266	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1090740	107246266	83908010	391	82351											
COL25A1	84570	broad.mit.edu	37	chr4	109790205	109790205	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaggaagaaaagaaagaaaGaaaaagaaagaaagaaggaa	12	0	0	7			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109790205	T	T	109790205	1	4	75	0	1	0	0	0	0	0	0	0	3716	957	33	3		3	COL25A1	4	109790205	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2543939	109790205	81364071	392	82352											
SEC24B	10427	broad.mit.edu	37	chr4	110383995	110383995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgcttcaatatttaaatGggggctatttttaaaaatta	6	3	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110383995	T	T	110383995	1	4	75	0	1	0	0	0	0	0	0	0	14108	1363	47	2		2	SEC24B	4	110383995	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	593790	110383995	80770281	393	82353											
ENPEP	2028	broad.mit.edu	37	chr4	111463760	111463760	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacaactaagtaaaaattaGgctttgggttttggatccaa	9	5	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111463760	C	C	111463760	1	2	75	0	1	0	0	0	0	0	0	0	5170	1015	35	4		4	ENPEP	4	111463760	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1079765	111463760	79690516	394	82354											
ANK2	287	broad.mit.edu	37	chr4	114277466	114277466	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtacaccaaaaccagctgtGattcatgaatgtgcagagga	10	8	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114277466	A	A	114277466	2	1	75	1	0	0	0	0	0	0	0	1	621	1277	45	4		4	ANK2	4	114277466	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2813706	114277466	76876810	395	82355											
NDST4	64579	broad.mit.edu	37	chr4	115792181	115792181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtacaagccccaggcaGcacctcacctcaccttggaa	8	16	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115792181	T	T	115792181	1	4	75	0	1	0	0	0	0	0	0	0	10353	986	34	3		3	NDST4	4	115792181	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1514715	115792181	75362095	396	82356											
PRDM5	11107	broad.mit.edu	37	chr4	121675709	121675709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagaatataatcttaccCtggtgtgagtacgaatgtgc	9	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121675709	A	A	121675709	3	1	75	1	0	0	0	0	1	0	0	0	12566	695	24	2	282	2	PRDM5	4	121675709	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5883528	121675709	69478567	397	82357											
SPATA5	166378	broad.mit.edu	37	chr4	123945517	123945517	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaaaaaaaggccaggaatCccaagtcacctaaagtacag	8	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123945517	T	T	123945517	1	4	75	0	1	0	0	0	0	0	0	0	15127	870	30	4		4	SPATA5	4	123945517	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2269808	123945517	67208759	398	82358											
PCDH18	54510	broad.mit.edu	37	chr4	138442481	138442481	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcaagggtcccttcctgCgctccagggagttggaccga	14	13	0	0	rs111581489		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138442481	G	G	138442481	3	3	75	1	0	0	0	0	1	0	0	0	11607	768	27	4	301	4	PCDH18	4	138442481	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	14496964	138442481	52711795	399	82359											
GYPE	2996	broad.mit.edu	37	chr4	144797822	144797822	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttctcttttgagtttaActgaactcagaggaataaac	7	7	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144797822	G	G	144797822	1	3	75	0	1	0	0	0	0	0	0	0	6976	58	2	5		5	GYPE	4	144797822	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	6355341	144797822	46356454	400	82360											
POU4F2	5458	broad.mit.edu	37	chr4	147561868	147561868	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaagatcgccgccatcgcgGagaagctggacctgaagaaa	12	10	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147561868	A	A	147561868	3	1	75	1	0	0	0	0	1	0	0	0	12375	1175	41	4	1144	4	POU4F2	4	147561868	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2764046	147561868	43592408	401	82361											
PRSS48	345062	broad.mit.edu	37	chr4	152198464	152198464	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatgtgacacttcacccaTgggatgttagttatgagtag	10	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152198464	C	C	152198464	1	2	75	0	1	0	0	0	0	0	0	0	12736	1479	51	5		5	PRSS48	4	152198464	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4636596	152198464	38955812	402	82362											
FGB	2244	broad.mit.edu	37	chr4	155488680	155488680	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagaaaatcaaaattgtatAgttaaatacattagttttat	4	3	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155488680	T	T	155488680	1	4	75	0	1	0	0	0	0	0	0	0	5888	435	15	5		5	FGB	4	155488680	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3290216	155488680	35665596	403	82363											
RBM46	166863	broad.mit.edu	37	chr4	155720407	155720407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcccaagtccgcctgaaGttgaaagatgcacttaccct	8	12	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155720407	T	T	155720407	3	4	75	1	0	0	0	0	1	0	0	0	13248	1029	36	3	1103	3	RBM46	4	155720407	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	231727	155720407	35433869	404	82364											
C4orf45	152940	broad.mit.edu	37	chr4	159928775	159928775	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatttccaagtacttctcaGaacgtcgggatgctgtggcc	10	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159928775	A	A	159928775	1	1	75	0	1	0	0	0	0	0	0	0	2296	957	33	4		4	C4orf45	4	159928775	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4208368	159928775	31225501	405	82365											
FSTL5	56884	broad.mit.edu	37	chr4	162306823	162306823	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatataaacttggaaagttAagttgtaaatttaaacaatg	8	2	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162306823	C	C	162306823	1	2	75	0	1	0	0	0	0	0	0	0	6140	377	13	5		5	FSTL5	4	162306823	3'UTR	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2378048	162306823	28847453	406	82366											
FSTL5	56884	broad.mit.edu	37	chr4	162307254	162307254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttgtgtaaatatcaaaaGcctcctgtatttctcctctg	6	9	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162307254	T	T	162307254	3	4	75	1	0	0	0	0	1	0	0	0	6140	971	34	3	358	3	FSTL5	4	162307254	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	431	162307254	28847022	407	82367											
MARCH1	55016	broad.mit.edu	37	chr4	165110742	165110742	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtccaggctggagtgctctCtggtgatcaagatacaggtg	14	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165110742	A	A	165110742	1	1	75	0	1	0	0	0	0	0	0	0	9390	928	32	3		3	MARCH1	4	165110742	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2803488	165110742	26043534	408	82368											
MARCH1	55016	broad.mit.edu	37	chr4	165111022	165111022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtcccacagattgaagtcAcctttgagatagatgtgaat	11	7	1	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165111022	G	G	165111022	1	3	75	0	1	0	0	0	0	0	0	0	9390	174	6	5		5	MARCH1	4	165111022	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	280	165111022	26043254	409	82369											
KLHL2	11275	broad.mit.edu	37	chr4	166226722	166226722	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatcctgaatatgtaatAgtcatttgttcaagtgctta	6	5	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166226722	T	T	166226722	1	4	75	0	1	0	0	0	0	0	0	0	8445	435	15	5		5	KLHL2	4	166226722	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1115700	166226722	24927554	410	82370											
NEK1	4750	broad.mit.edu	37	chr4	170384639	170384639	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcttttatccaattgagtGgttcatgagaaaaaaaggtt	9	4	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170384639	A	A	170384639	1	1	75	0	1	0	0	0	0	0	0	0	10416	1363	47	4		4	NEK1	4	170384639	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4157917	170384639	20769637	411	82371											
NEK1	4750	broad.mit.edu	37	chr4	170482535	170482535	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaattaattgtacactaaAgaaagaaagaaaatcccaag	5	5	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170482535	G	G	170482535	1	3	75	0	1	0	0	0	0	0	0	0	10416	87	3	5		5	NEK1	4	170482535	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	97896	170482535	20671741	412	82372											
GALNTL6	442117	broad.mit.edu	37	chr4	173269703	173269703	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagatgtatctggaaaggcTgccaaacaccagcatcatta	8	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173269703	A	A	173269703	3	1	75	1	0	0	0	0	1	0	0	0	6287	1580	55	5	430	5	GALNTL6	4	173269703	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2787168	173269703	17884573	413	82373											
GLRA3	8001	broad.mit.edu	37	chr4	175710011	175710011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatatcctgatgtcctgCccattaatttatccagaaaa	4	11	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175710011	A	A	175710011	3	1	75	1	0	0	0	0	1	0	0	0	6520	739	26	3	1275	3	GLRA3	4	175710011	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2440308	175710011	15444265	414	82374											
GPM6A	2823	broad.mit.edu	37	chr4	176594958	176594958	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagaacgcagctgcgatgCcgtagatcacatacttaaag	9	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176594958	T	T	176594958	3	4	75	1	0	0	0	0	1	0	0	0	6680	739	26	4	596	4	GPM6A	4	176594958	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	884947	176594958	14559318	415	82375											
WDR17	116966	broad.mit.edu	37	chr4	177071448	177071448	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtaactcttaccataatctGtgcactataagaaagcaaat	6	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177071448	C	C	177071448	1	2	75	0	1	0	0	0	0	0	0	0	17404	1392	48	4		4	WDR17	4	177071448	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	476490	177071448	14082828	416	82376											
VEGFC	7424	broad.mit.edu	37	chr4	177608715	177608715	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttactataccttacttgGttctgggtgtggcatgaaac	9	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608715	A	A	177608715	1	1	75	0	1	0	0	0	0	0	0	0	17279	1276	44	4		4	VEGFC	4	177608715	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	537267	177608715	13545561	417	82377											
WWC2	80014	broad.mit.edu	37	chr4	184114661	184114661	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctttaagattttaaatgCaacctagacacttgtggtta	6	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184114661	T	T	184114661	1	4	75	0	1	0	0	0	0	0	0	0	17539	725	25	4		4	WWC2	4	184114661	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6505946	184114661	7039615	418	82378											
HELT	391723	broad.mit.edu	37	chr4	185941733	185941733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgggcctttcccctggcCgcctggcgcggcccgcagcc	14	20	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185941733	A	A	185941733	3	1	75	1	0	0	0	0	1	0	0	0	7115	652	23	1	805	1	HELT	4	185941733	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1827072	185941733	5212543	419	82379											
FAT1	2195	broad.mit.edu	37	chr4	187525440	187525440	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtttgtttttgtatgaAatgtaagctgttcaaataga	9	2	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187525440	T	T	187525440	1	4	75	0	1	0	0	0	0	0	0	0	5746	29	1	5		5	FAT1	4	187525440	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1583707	187525440	3628836	420	82380											
PLEKHG4B	153478	broad.mit.edu	37	chr5	171273	171273	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctcggcccgccccccaCagcctgcccggccctcagcc	8	27	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171273	T	T	171273	1	4	75	0	1	0	0	0	0	0	0	0	12167	493	17	4		4	PLEKHG4B	5	171273	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08		171273	180743987	421	82381											
AHRR	57491	broad.mit.edu	37	chr5	424015	424015	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggggcacaggcacgcccAccgagtactcggccttcctg	13	15	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	424015	G	G	424015	3	3	75	1	0	0	0	0	1	0	0	0	417	159	6	5	669	5	AHRR	5	424015	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	252742	424015	180491245	422	82382											
TRIP13	9319	broad.mit.edu	37	chr5	894987	894987	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggtgattacacatggactGagtttgatgaaccttttttg	10	5	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	894987	T	T	894987	4	4	75	1	0	0	0	0	0	1	0	0	16682	1291	45	3	184	3	TRIP13	5	894987	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	470972	894987	180020273	423	82383											
IRX2	153572	broad.mit.edu	37	chr5	2749051	2749051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtcgtcatacttgtcCttgcactccgagcccgattc	8	15	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2749051	A	A	2749051	3	1	75	1	0	0	0	0	1	0	0	0	7914	680	24	2	652	2	IRX2	5	2749051	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1854064	2749051	178166209	424	82384											
ADCY2	108	broad.mit.edu	37	chr5	7690869	7690869	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaaagcggagatcatccaGaggctgcagggccccaaggc	14	11	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7690869	T	T	7690869	3	4	75	1	0	0	0	0	1	0	0	0	294	933	33	3	804	3	ADCY2	5	7690869	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4941818	7690869	173224391	425	82385											
ADCY2	108	broad.mit.edu	37	chr5	7766758	7766759	+	Intron	DNP	CT	AA	AA													ccacctgctagttatttaatCtaatttacattaattcattg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7766759	AA	AA	7766758	1	1	75	0	1	0	0	0	0	0	0	0	294	928	32	3		3	ADCY2	5	7766758	Intron	DNP	CT	TCGA-17-Z046-01A-01W-0746-08	75889	7766758	173148502	426	82386											
TRIO	7204	broad.mit.edu	37	chr5	14388653	14388653	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccactctgttatttcataaAtccataaaagtagatagtga	5	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14388653	G	G	14388653	1	3	75	0	1	0	0	0	0	0	0	0	16677	116	4	5		5	TRIO	5	14388653	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	6621895	14388653	166526607	427	82387											
ANKH	56172	broad.mit.edu	37	chr5	14751355	14751355	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctacaaaaacaacctgagaGaagggagaacgggaacaggt	13	7	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14751355	A	A	14751355	1	1	75	0	1	0	0	0	0	0	0	0	627	957	33	4		4	ANKH	5	14751355	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	362702	14751355	166163905	428	82388											
FBXL7	23194	broad.mit.edu	37	chr5	15928208	15928208	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccccagaaggagcaggccAgcatagaccggctcccggac	13	15	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928208	T	T	15928208	3	4	75	1	0	0	0	0	1	0	0	0	5781	188	7	5	347	5	FBXL7	5	15928208	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1176853	15928208	164987052	429	82389											
FBXL7	23194	broad.mit.edu	37	chr5	15928628	15928628	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtaaatggacactgaccTaccagctatgggccctcctg	10	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928628	A	A	15928628	1	1	75	0	1	0	0	0	0	0	0	0	5781	1537	53	5		5	FBXL7	5	15928628	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	420	15928628	164986632	430	82390											
FBXL7	23194	broad.mit.edu	37	chr5	15936728	15936728	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcacgcagctcacccacctCtacctgcgccgctgcgtccg	9	20	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15936728	T	T	15936728	2	4	75	1	0	0	0	0	0	0	0	1	5781	900	32	4		4	FBXL7	5	15936728	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8100	15936728	164978532	431	82391											
CDH18	1016	broad.mit.edu	37	chr5	19591193	19591193	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaggattccttctctGgtctctttgtcagtggagat	10	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19591193	T	T	19591193	2	4	75	1	0	0	0	0	0	0	0	1	3133	1335	47	2		2	CDH18	5	19591193	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3654465	19591193	161324067	432	82392											
CDH18	1016	broad.mit.edu	37	chr5	19747347	19747347	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcagaattggagtgcagcTgtgaaatacacatggaataa	11	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19747347	C	C	19747347	5	2	75	1	0	0	0	0	0	0	1	0	3133	1594	55	5	2185	5	CDH18	5	19747347	Splice_Site	SNP	T	TCGA-17-Z046-01A-01W-0746-08	156154	19747347	161167913	433	82393											
CDH12	1010	broad.mit.edu	37	chr5	22142763	22142763	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgagtttaagcaaatttgGatgcaatcataacaaaatca	6	6	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22142763	T	T	22142763	1	4	75	0	1	0	0	0	0	0	0	0	3128	1189	41	3		3	CDH12	5	22142763	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2395416	22142763	158772497	434	82394											
PRDM9	56979	broad.mit.edu	37	chr5	23510202	23510202	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatggagttttgctcttttCacccaggctggggtgcaatg	13	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23510202	T	T	23510202	1	4	75	0	1	0	0	0	0	0	0	0	12569	841	29	4		4	PRDM9	5	23510202	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1367439	23510202	157405058	435	82395											
CDH10	1008	broad.mit.edu	37	chr5	24593440	24593440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattccacatccaaccacGtttttgacgatggagaattt	7	9	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24593440	T	T	24593440	3	4	75	1	0	0	0	0	1	0	0	0	3126	1145	40	3	2250	3	CDH10	5	24593440	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1083238	24593440	156321820	436	82396											
RNASEN	29102	broad.mit.edu	37	chr5	31526249	31526249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcataatcagatctgtacCggctgtcttgtcttctcctg	9	11	6	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31526249	A	A	31526249	3	1	75	1	0	0	0	0	1	0	0	0	13528	652	23	1	3461	1	RNASEN	5	31526249	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6932809	31526249	149389011	437	82397											
TARS	6897	broad.mit.edu	37	chr5	33454958	33454958	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattgggtttacttgtagtAaatattatcatctgtctctt	6	5	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33454958	G	G	33454958	1	3	75	0	1	0	0	0	0	0	0	0	15678	377	13	5		5	TARS	5	33454958	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1928709	33454958	147460302	438	82398											
TARS	6897	broad.mit.edu	37	chr5	33462014	33462014	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtctttgcttcttagattGacatacagattaaagatgcg	8	7	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33462014	T	T	33462014	3	4	75	1	0	0	0	0	1	0	0	0	15678	1290	45	3	1691	3	TARS	5	33462014	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7056	33462014	147453246	439	82399											
ADAMTS12	81792	broad.mit.edu	37	chr5	33643510	33643510	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccacattgagttccatcTgcagcagcgtccagcttaga	8	13	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33643510	C	C	33643510	2	2	75	1	0	0	0	0	0	0	0	1	257	1567	55	5		5	ADAMTS12	5	33643510	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	181496	33643510	147271750	440	82400											
IL7R	3575	broad.mit.edu	37	chr5	35876062	35876062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctggtgccatcttaataCcctttctcctttttctgtgc	5	13	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35876062	A	A	35876062	1	1	75	0	1	0	0	0	0	0	0	0	7775	522	18	3		3	IL7R	5	35876062	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2232552	35876062	145039198	441	82401											
NIPBL	25836	broad.mit.edu	37	chr5	36958221	36958221	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagagagttgaaagataaCcttggcagtgatgacccaga	12	8	0	6			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36958221	G	G	36958221	3	3	75	1	0	0	0	0	1	0	0	0	10523	506	18	4	256	4	NIPBL	5	36958221	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1082159	36958221	143957039	442	82402											
IL31RA	133396	broad.mit.edu	37	chr5	55204169	55204169	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacatggaaagagattccCaagagtgagagaaagggtat	12	5	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55204169	A	A	55204169	2	1	75	1	0	0	0	0	0	0	0	1	7761	581	21	2		2	IL31RA	5	55204169	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	18245948	55204169	125711091	443	82403											
HTR1A	3350	broad.mit.edu	37	chr5	63257024	63257024	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggtcttccggggtgcgccAgcccagcatgggcgggatag	18	12	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63257024	T	T	63257024	3	4	75	1	0	0	0	0	1	0	0	0	7506	188	7	5	748	5	HTR1A	5	63257024	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	8052855	63257024	117658236	444	82404											
MRPS27	23107	broad.mit.edu	37	chr5	71591425	71591425	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtctataagctaaaagaCagaaaaagaaacctttggtt	8	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71591425	A	A	71591425	1	1	75	0	1	0	0	0	0	0	0	0	9932	493	17	3		3	MRPS27	5	71591425	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8334401	71591425	109323835	445	82405											
NSA2	10412	broad.mit.edu	37	chr5	74064821	74064821	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtttggattaccatgagaaAaagagaaagaaggaaagtcg	12	4	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74064821	G	G	74064821	2	3	75	1	0	0	0	0	0	0	0	1	10763	11	1	5		5	NSA2	5	74064821	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2473396	74064821	106850439	446	82406											
CRHBP	1393	broad.mit.edu	37	chr5	76259322	76259322	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgttatgtatgtgcctatCaagattaaaaaaaaataagc	6	4	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76259322	G	G	76259322	1	3	75	0	1	0	0	0	0	0	0	0	3902	841	29	4		4	CRHBP	5	76259322	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2194501	76259322	104655938	447	82407											
CMYA5	202333	broad.mit.edu	37	chr5	79027059	79027060	+	Frame_Shift_Ins	INS	-	A	A													gaggcatcccaattcaaaccINSaaaaggtatttctgagcaca							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79027060	A	A	79027059	7	5	75	1	0	1	1	0	0	0	0	0	3622	594	21	0	2477	0	CMYA5	5	79027059	Frame_Shift_Ins	INS	-	TCGA-17-Z046-01A-01W-0746-08	2767737	79027059	101888201	448	82408											
TMEM161B	153396	broad.mit.edu	37	chr5	87494990	87494990	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagatcaaaaagttgatacGgtgctctcaaagacaacaat	7	8	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87494990	C	C	87494990	1	2	75	0	1	0	0	0	0	0	0	0	16200	1131	39	4		4	TMEM161B	5	87494990	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	8467931	87494990	93420270	449	82409											
FBXL17	64839	broad.mit.edu	37	chr5	107356476	107356476	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttcttagctcataatttTtttatttttattttttggta	5	3	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107356476	C	C	107356476	1	2	75	0	1	0	0	0	0	0	0	0	5770	1856	64	5		5	FBXL17	5	107356476	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	19861486	107356476	73558784	450	82410											
TSSK1B	83942	broad.mit.edu	37	chr5	112769636	112769636	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcttgtcagagccaggttCgggggtccacaagggttcag	14	10	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112769636	A	A	112769636	4	1	75	1	0	0	0	0	0	1	0	0	16793	893	31	3	206	3	TSSK1B	5	112769636	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5413160	112769636	68145624	451	82411											
KCNN2	3781	broad.mit.edu	37	chr5	113828922	113828922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctttcttttttgcggtGttggggaagcatgcttctca	10	9	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113828922	T	T	113828922	1	4	75	0	1	0	0	0	0	0	0	0	8149	1392	48	3		3	KCNN2	5	113828922	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1059286	113828922	67086338	452	82412											
FBN2	2201	broad.mit.edu	37	chr5	127697409	127697409	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaataaggcgatgaagacagCtcttaccttcacaggtctct	8	10	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127697409	G	G	127697409	1	3	75	0	1	0	0	0	0	0	0	0	5760	812	28	4		4	FBN2	5	127697409	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	13868487	127697409	53217851	453	82413											
C5orf56	441108	broad.mit.edu	37	chr5	131822124	131822124	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcttagtttgcaagacatCgagcgccctccgaccaaccc	7	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131822124	A	A	131822124	2	1	75	1	0	0	0	0	0	0	0	1	2335	899	31	3		3	C5orf56	5	131822124	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4124715	131822124	49093136	454	82414											
H2AFY	9555	broad.mit.edu	37	chr5	134705081	134705081	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcccacttcatacattctGgccaaatcacataccttgga	4	13	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134705081	A	A	134705081	1	1	75	0	1	0	0	0	0	0	0	0	6994	1363	47	4		4	H2AFY	5	134705081	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2882957	134705081	46210179	455	82415											
PCDHAC2	56134	broad.mit.edu	37	chr5	140346736	140346736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgctggcgcacaaccccGtggcggtgagcgccgttgag	16	12	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140346736	T	T	140346736	3	4	75	1	0	0	0	0	1	0	0	0	11627	1145	40	3	387	3	PCDHAC2	5	140346736	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5641655	140346736	40568524	456	82416											
PCDHAC2	56134	broad.mit.edu	37	chr5	140389308	140389308	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaaccccaaacaatccgGtcccggtgagttgcccgaca	10	15	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140389308	A	A	140389308	3	1	75	1	0	0	0	0	1	0	0	0	11627	1261	44	4	2912	4	PCDHAC2	5	140389308	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	42572	140389308	40525952	457	82417											
PCDHB16	57717	broad.mit.edu	37	chr5	140562614	140562614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatcatgctttggacttGgacgtaggaagcaataatgt	11	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140562614	T	T	140562614	3	4	75	1	0	0	0	0	1	0	0	0	11635	1339	47	2	482	2	PCDHB16	5	140562614	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	173306	140562614	40352646	458	82418											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740127	140740127	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactaagattaatttaaaaaTtggcgaatccactaagccag	7	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140740127	G	G	140740127	3	3	75	1	0	0	0	0	1	0	0	0	11657	1493	52	5	427	5	PCDHGB2	5	140740127	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	177513	140740127	40175133	459	82419											
PCDHGA12	26025	broad.mit.edu	37	chr5	140811650	140811650	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactcatatctcgctgaacGtggcagacaccaacgacaac	7	13	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140811650	A	A	140811650	3	1	75	1	0	0	0	0	1	0	0	0	11647	1145	40	4	1326	4	PCDHGA12	5	140811650	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	71523	140811650	40103610	460	82420											
ARHGAP26	23092	broad.mit.edu	37	chr5	142587198	142587198	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttttcacacccttttcaaCcctgactcaagtttctgaat	3	12	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142587198	T	T	142587198	1	4	75	0	1	0	0	0	0	0	0	0	877	522	18	4		4	ARHGAP26	5	142587198	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1775548	142587198	38328062	461	82421											
JAKMIP2	9832	broad.mit.edu	37	chr5	147019347	147019347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttaagaaaaaaagcccCaaaacaattgtgttatgttc	8	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147019347	A	A	147019347	1	1	75	0	1	0	0	0	0	0	0	0	8011	609	21	2		2	JAKMIP2	5	147019347	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4432149	147019347	33895913	462	82422											
SLC26A2	1836	broad.mit.edu	37	chr5	149361141	149361141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcaatttttagatacagCagggatccacacactgaaag	7	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149361141	A	A	149361141	3	1	75	1	0	0	0	0	1	0	0	0	14631	710	25	3	1991	3	SLC26A2	5	149361141	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2341794	149361141	31554119	463	82423											
PDGFRB	5159	broad.mit.edu	37	chr5	149514398	149514398	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtagcttctgtcctcaaaGataccagaaaagccacgttg	8	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149514398	C	C	149514398	3	2	75	1	0	0	0	0	1	0	0	0	11756	932	33	4	2854	4	PDGFRB	5	149514398	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	153257	149514398	31400862	464	82424											
SLC6A7	6534	broad.mit.edu	37	chr5	149584454	149584454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccgggcctctacttcagGgcctgctggctgttcctgtc	12	14	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149584454	T	T	149584454	3	4	75	1	0	0	0	0	1	0	0	0	14803	1223	43	2	1543	2	SLC6A7	5	149584454	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	70056	149584454	31330806	465	82425											
TCOF1	6949	broad.mit.edu	37	chr5	149776279	149776279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggagaagaaagggaagGggtctcttggctcccaaggg	16	7	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149776279	T	T	149776279	3	4	75	1	0	0	0	0	1	0	0	0	15830	1232	43	2	4335	2	TCOF1	5	149776279	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	191825	149776279	31138981	466	82426											
NMUR2	56923	broad.mit.edu	37	chr5	151777826	151777826	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaactgagacctagagaaAtgtaagactacgtcaaatgt	9	6	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151777826	G	G	151777826	1	3	75	0	1	0	0	0	0	0	0	0	10602	116	4	5		5	NMUR2	5	151777826	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2001547	151777826	29137434	467	82427											
FAM114A2	10827	broad.mit.edu	37	chr5	153372505	153372505	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtggcattccttggccgtCacaagtcccaggtcaaaacg	11	12	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153372505	T	T	153372505	1	4	75	0	1	0	0	0	0	0	0	0	5450	841	29	4		4	FAM114A2	5	153372505	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1594679	153372505	27542755	468	82428											
SLIT3	6586	broad.mit.edu	37	chr5	168310186	168310186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaggcacctggaccaccCtcttgtcccatccctcaccc	6	20	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168310186	A	A	168310186	1	1	75	0	1	0	0	0	0	0	0	0	14855	696	24	2		2	SLIT3	5	168310186	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	14937681	168310186	12605074	469	82429											
GABRP	2568	broad.mit.edu	37	chr5	170224677	170224677	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgattcatcgtggattcagCccttctgactgtacttccag	8	11	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170224677	G	G	170224677	1	3	75	0	1	0	0	0	0	0	0	0	6234	754	26	4		4	GABRP	5	170224677	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1914491	170224677	10690583	470	82430											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171833469	171833469	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatatactaaaagttcaCtgcgttcagctttccagaaa	7	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171833469	G	G	171833469	1	3	75	0	1	0	0	0	0	0	0	0	14370	580	20	4		4	SH3PXD2B	5	171833469	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1608792	171833469	9081791	471	82431											
ERGIC1	57222	broad.mit.edu	37	chr5	172315590	172315590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagcagaaaaactgtgGgaagaaccatggtttgttga	13	4	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172315590	A	A	172315590	1	1	75	0	1	0	0	0	0	0	0	0	5265	1247	43	4		4	ERGIC1	5	172315590	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	482121	172315590	8599670	472	82432											
HRH2	3274	broad.mit.edu	37	chr5	175111114	175111114	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgtatgctgcgctgaacaGagacttccgcaccgggtacc	11	14	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175111114	T	T	175111114	3	4	75	1	0	0	0	0	1	0	0	0	7423	942	33	3	880	3	HRH2	5	175111114	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2795524	175111114	5804146	473	82433											
HK3	3101	broad.mit.edu	37	chr5	176316514	176316514	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcggccccggtcttcgtccAgcactgccacatgccgtgcc	11	19	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176316514	G	G	176316514	3	3	75	1	0	0	0	0	1	0	0	0	7259	188	7	5	2037	5	HK3	5	176316514	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1205400	176316514	4598746	474	82434											
COL23A1	91522	broad.mit.edu	37	chr5	177694184	177694184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctatgggtggggaagagCcctcttggcctctttctgtg	15	9	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177694184	A	A	177694184	1	1	75	0	1	0	0	0	0	0	0	0	3714	754	26	3		3	COL23A1	5	177694184	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1377670	177694184	3221076	475	82435											
ADAMTS2	9509	broad.mit.edu	37	chr5	178541052	178541052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgggtgatcctctgtgGcattggtgctggaggcattg	15	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178541052	T	T	178541052	3	4	75	1	0	0	0	0	1	0	0	0	265	1203	42	3	187	3	ADAMTS2	5	178541052	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	846868	178541052	2374208	476	82436											
RUFY1	80230	broad.mit.edu	37	chr5	179025801	179025801	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactcaggatggagctgcaAcaagtggaaggactgaaaaa	12	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179025801	G	G	179025801	2	3	75	1	0	0	0	0	0	0	0	1	13849	40	2	5		5	RUFY1	5	179025801	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	484749	179025801	1889459	477	82437											
FLT4	2324	broad.mit.edu	37	chr5	180030287	180030287	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccccatactcgctgttgtAaaacacctggcctcctcggg	8	16	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180030287	G	G	180030287	3	3	75	1	0	0	0	0	1	0	0	0	6002	362	13	5	98	5	FLT4	5	180030287	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1004486	180030287	884973	478	82438											
CD83	9308	broad.mit.edu	37	chr6	14118281	14118281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccgcaggttccctacacGgtctcctgggtcaaggtagg	13	12	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14118281	T	T	14118281	2	4	75	1	0	0	0	0	0	0	0	1	3071	1103	39	1		1	CD83	6	14118281	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08		14118281	156996786	479	82439											
DTNBP1	84062	broad.mit.edu	37	chr6	15615574	15615574	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattcacactgcccacataAgtcttccagatgcagcaggt	7	12	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15615574	C	C	15615574	3	2	75	1	0	0	0	0	1	0	0	0	4830	69	3	5	764	5	DTNBP1	6	15615574	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1497293	15615574	155499493	480	82440											
DCDC2	51473	broad.mit.edu	37	chr6	24353788	24353788	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaattttcaaaataatatTtgcattacctctgtattaac	3	6	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24353788	C	C	24353788	1	2	75	0	1	0	0	0	0	0	0	0	4318	1856	64	5		5	DCDC2	6	24353788	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	8738214	24353788	146761279	481	82441											
KIAA0319	9856	broad.mit.edu	37	chr6	24601348	24601348	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattgtgcaccacacagtgGgtgatggcaggcttctgagg	14	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24601348	A	A	24601348	1	1	75	0	1	0	0	0	0	0	0	0	8238	1247	43	4		4	KIAA0319	6	24601348	5'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	247560	24601348	146513719	482	82442											
SLC17A1	6568	broad.mit.edu	37	chr6	25819480	25819480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaatttcctgtgaaaCaaatttgtgtatcataacac	5	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25819480	A	A	25819480	1	1	75	0	1	0	0	0	0	0	0	0	14529	493	17	3		3	SLC17A1	6	25819480	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1218132	25819480	145295587	483	82443											
HIST1H3H	8357	broad.mit.edu	37	chr6	27776115	27776115	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggcaactatgcggagcGggtcggtgctggagcgccgg	18	10	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27776115	T	T	27776115	1	4	75	0	1	0	0	0	0	0	0	0	7229	1116	39	1		1	HIST1H3H	6	27776115	5'Flank	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1956635	27776115	143338952	484	82444											
OR12D3	81797	broad.mit.edu	37	chr6	29342471	29342471	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatatgctgcctgtgacaatGgaaagaagccattgattgag	12	6	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29342471	A	A	29342471	2	1	75	1	0	0	0	0	0	0	0	1	11026	1335	47	4		4	OR12D3	6	29342471	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1566356	29342471	141772596	485	82445											
OR10C1	442194	broad.mit.edu	37	chr6	29408205	29408205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactgctgctgagccaccGggtgtgtctacagctagctg	12	14	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29408205	T	T	29408205	3	4	75	1	0	0	0	0	1	0	0	0	10992	1116	39	1	415	1	OR10C1	6	29408205	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	65734	29408205	141706862	486	82446											
HLA-F	3134	broad.mit.edu	37	chr6	29693107	29693107	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagggagatgggtaaagaGgggaacgaggggtcatgtct	20	3	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29693107	A	A	29693107	1	1	75	0	1	0	0	0	0	0	0	0	7278	1015	35	4		4	HLA-F	6	29693107	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	284902	29693107	141421960	487	82447											
GRM4	2914	broad.mit.edu	37	chr6	34003901	34003901	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgcatagctgatgctcatCcctagtcccaggaagattcg	10	12	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34003901	G	G	34003901	2	3	75	1	0	0	0	0	0	0	0	1	6865	842	30	4		4	GRM4	6	34003901	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4310794	34003901	137111166	488	82448											
C6orf222	389384	broad.mit.edu	37	chr6	36298583	36298583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagcctcggtctattgccCaggctggagtgcagtggcgc	16	12	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36298583	A	A	36298583	1	1	75	0	1	0	0	0	0	0	0	0	2379	609	21	2		2	C6orf222	6	36298583	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2294682	36298583	134816484	489	82449											
PI16	221476	broad.mit.edu	37	chr6	36929369	36929369	+	Intron	DEL	G	-	-													gggaaccctggagatggagaGggggaaggcacaggcagagc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36929369	-	-	36929369	6	5	75	0	1	1	0	1	0	0	0	0	11964	1015	35	0		0	PI16	6	36929369	Intron	DEL	G	TCGA-17-Z046-01A-01W-0746-08	630786	36929369	134185698	490	82450											
KIF6	221458	broad.mit.edu	37	chr6	39513461	39513461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggatgttattagtttttcCagcctaaaaatacataatgt	6	5	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39513461	A	A	39513461	2	1	75	1	0	0	0	0	0	0	0	1	8378	581	21	2		2	KIF6	6	39513461	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2584092	39513461	131601606	491	82451											
UNC5CL	222643	broad.mit.edu	37	chr6	41011140	41011140	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcaccatgcccagctcctCccaccaactccctccctggc	4	24	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41011140	T	T	41011140	1	4	75	0	1	0	0	0	0	0	0	0	17120	870	30	4		4	UNC5CL	6	41011140	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1497679	41011140	130103927	492	82452											
TBCC	6903	broad.mit.edu	37	chr6	42713449	42713449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgctcggccaaggccgcCtgcagccgcgccagcgcctc	13	21	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42713449	A	A	42713449	3	1	75	1	0	0	0	0	1	0	0	0	15753	680	24	2	681	2	TBCC	6	42713449	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1702309	42713449	128401618	493	82453											
SPATS1	221409	broad.mit.edu	37	chr6	44329903	44329903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaggctgcacgttttggCaaagagctcacagcagatgc	12	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44329903	T	T	44329903	1	4	75	0	1	0	0	0	0	0	0	0	15134	725	25	4		4	SPATS1	6	44329903	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1616454	44329903	126785164	494	82454											
PLA2G7	7941	broad.mit.edu	37	chr6	46682037	46682037	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaactacttgaccagacagGtctaggactgatcaatagac	8	9	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46682037	A	A	46682037	1	1	75	0	1	0	0	0	0	0	0	0	12104	1276	44	4		4	PLA2G7	6	46682037	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2352134	46682037	124433030	495	82455											
RHAG	6005	broad.mit.edu	37	chr6	49580258	49580258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgtgaacctgtgtgagcGgcagaaacataaatgaggtg	14	5	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49580258	T	T	49580258	1	4	75	0	1	0	0	0	0	0	0	0	13424	1131	39	1		1	RHAG	6	49580258	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2898221	49580258	121534809	496	82456											
CRISP3	10321	broad.mit.edu	37	chr6	49696695	49696695	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagttgagattattacactAagatggccattttatatctt	6	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49696695	T	T	49696695	1	4	75	0	1	0	0	0	0	0	0	0	3913	377	13	5		5	CRISP3	6	49696695	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	116437	49696695	121418372	497	82457											
PKHD1	5314	broad.mit.edu	37	chr6	51503850	51503850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacatttggacaataaaGgacaattttttaaactcaaa	6	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51503850	T	T	51503850	1	4	75	0	1	0	0	0	0	0	0	0	12066	1015	35	2		2	PKHD1	6	51503850	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1807155	51503850	119611217	498	82458											
GSTA1	2938	broad.mit.edu	37	chr6	52671319	52671319	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggggccctgaagacctgGagaaggctgaggtcagaatg	18	7	1	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52671319	T	T	52671319	1	4	75	0	1	0	0	0	0	0	0	0	6896	1189	41	3		3	GSTA1	6	52671319	5'Flank	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1167469	52671319	118443748	499	82459											
GFRAL	389400	broad.mit.edu	37	chr6	55223618	55223618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtctttcattaggtgagGggggatcacatgttaatgtg	13	4	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55223618	T	T	55223618	1	4	75	0	1	0	0	0	0	0	0	0	6415	1247	43	2		2	GFRAL	6	55223618	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2552299	55223618	115891449	500	82460											
DST	667	broad.mit.edu	37	chr6	56484657	56484657	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgacgttttttcaagctggAgggcattaagttcatatgtc	10	6	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56484657	G	G	56484657	1	3	75	0	1	0	0	0	0	0	0	0	4823	304	11	5		5	DST	6	56484657	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1261039	56484657	114630410	501	82461											
COL9A1	1297	broad.mit.edu	37	chr6	70981754	70981754	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgcataaaaataaatgatGaagtgatacttacagggggt	10	4	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70981754	T	T	70981754	1	4	75	0	1	0	0	0	0	0	0	0	3739	1305	45	3		3	COL9A1	6	70981754	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	14497097	70981754	100133313	502	82462											
KCNQ5	56479	broad.mit.edu	37	chr6	73765369	73765369	+	Intron	DEL	G	-	-													gggtactgactgcagcccatGgcaacagcctctggggcact							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73765369	-	-	73765369	6	5	75	0	1	1	0	1	0	0	0	0	8156	1363	47	0		0	KCNQ5	6	73765369	Intron	DEL	G	TCGA-17-Z046-01A-01W-0746-08	2783615	73765369	97349698	503	82463											
KCNQ5	56479	broad.mit.edu	37	chr6	73902341	73902341	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagataagaagagccgagAgaaaataacagcagaacatg	10	6	1	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73902341	T	T	73902341	3	4	75	1	0	0	0	0	1	0	0	0	8156	304	11	5	1874	5	KCNQ5	6	73902341	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	136972	73902341	97212726	504	82464											
C6orf221	154288	broad.mit.edu	37	chr6	74072832	74072832	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcaggccggggcggagaaCgcatcccgcacgtccagggt	17	14	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74072832	G	G	74072832	3	3	75	1	0	0	0	0	1	0	0	0	2378	536	19	4	190	4	C6orf221	6	74072832	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	170491	74072832	97042235	505	82465											
IMPG1	3617	broad.mit.edu	37	chr6	76744520	76744520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacactgtaatacagagtcAttaatggccatgccctaaga	7	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76744520	G	G	76744520	1	3	75	0	1	0	0	0	0	0	0	0	7798	232	8	5		5	IMPG1	6	76744520	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2671688	76744520	94370547	506	82466											
TBX18	9096	broad.mit.edu	37	chr6	85422342	85422342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattggagcatgggctagCaggcccgtccaggggtccac	14	12	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85422342	A	A	85422342	1	1	75	0	1	0	0	0	0	0	0	0	15775	725	25	3		3	TBX18	6	85422342	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8677822	85422342	85692725	507	82467											
BACH2	60468	broad.mit.edu	37	chr6	90641848	90641848	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcctagaggtgttgtaGtctatccctgtgaagactga	14	7	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90641848	T	T	90641848	1	4	75	0	1	0	0	0	0	0	0	0	1289	1044	36	3		3	BACH2	6	90641848	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5219506	90641848	80473219	508	82468											
GRIK2	2898	broad.mit.edu	37	chr6	102134218	102134218	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgattcaggtttgctggatgGatttatgacggtatgaatac	12	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102134218	C	C	102134218	3	2	75	1	0	0	0	0	1	0	0	0	6840	1174	41	4	963	4	GRIK2	6	102134218	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	11492370	102134218	68980849	509	82469											
LAMA2	3908	broad.mit.edu	37	chr6	129637366	129637366	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattttagagtctgtaaggAaggttattgacctacagata	9	4	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129637366	G	G	129637366	1	3	75	0	1	0	0	0	0	0	0	0	8678	261	9	5		5	LAMA2	6	129637366	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	27503148	129637366	41477701	510	82470											
ARHGAP18	93663	broad.mit.edu	37	chr6	129901237	129901237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttcctccaatttcataCaaaaaaacttctcctttctt	0	11	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129901237	A	A	129901237	3	1	75	1	0	0	0	0	1	0	0	0	870	477	17	3	121	3	ARHGAP18	6	129901237	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	263871	129901237	41213830	511	82471											
MED23	9439	broad.mit.edu	37	chr6	131908654	131908654	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatagatagggagatgggagTtataaggtgtcaacagattc	13	3	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131908654	A	A	131908654	1	1	75	0	1	0	0	0	0	0	0	0	9534	1740	60	5		5	MED23	6	131908654	3'UTR	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2007417	131908654	39206413	512	82472											
KIAA1244	57221	broad.mit.edu	37	chr6	138638516	138638516	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatgtgacgaaaacaccaGgtaaatatttctgtgtccgt	10	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138638516	A	A	138638516	3	1	75	1	0	0	0	0	1	0	0	0	8287	1014	35	4	4580	4	KIAA1244	6	138638516	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6729862	138638516	32476551	513	82473											
VTA1	51534	broad.mit.edu	37	chr6	142468446	142468446	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccgcgcttgcaccgctgCccccgctccccgcacagttc	10	21	0	0	rs137966407		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142468446	T	T	142468446	3	4	75	1	0	0	0	0	1	0	0	0	17360	739	26	4	24	4	VTA1	6	142468446	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3829930	142468446	28646621	514	82474											
PPIL4	85313	broad.mit.edu	37	chr6	149838586	149838586	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactcttggtgtatttcccaCctatttattaagaaaagaaa	5	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149838586	G	G	149838586	3	3	75	1	0	0	0	0	1	0	0	0	12430	521	18	4	507	4	PPIL4	6	149838586	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7370140	149838586	21276481	515	82475											
MTHFD1L	25902	broad.mit.edu	37	chr6	151256475	151256475	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taactaggatatcagaaaatCaaggagtccctgtacttata	7	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151256475	T	T	151256475	1	4	75	0	1	0	0	0	0	0	0	0	10022	841	29	4		4	MTHFD1L	6	151256475	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1417889	151256475	19858592	516	82476											
AKAP12	9590	broad.mit.edu	37	chr6	151627081	151627081	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggcacacagcacttgcAacaaactttggactcagcag	10	11	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151627081	T	T	151627081	1	4	75	0	1	0	0	0	0	0	0	0	448	145	5	5		5	AKAP12	6	151627081	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	370606	151627081	19487986	517	82477											
SYNE1	23345	broad.mit.edu	37	chr6	152523144	152523144	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtaggaaactggggggggAaaagaaaagaaacactcttc	13	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152523144	G	G	152523144	1	3	75	0	1	0	0	0	0	0	0	0	15564	261	9	5		5	SYNE1	6	152523144	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	896063	152523144	18591923	518	82478											
TIAM2	26230	broad.mit.edu	37	chr6	155503252	155503252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatttcgactttctcaaCatactgtacttatgagaaaa	5	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155503252	A	A	155503252	1	1	75	0	1	0	0	0	0	0	0	0	16014	493	17	3		3	TIAM2	6	155503252	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2980108	155503252	15611815	519	82479											
FNDC1	84624	broad.mit.edu	37	chr6	159653426	159653426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccacgcgtccacccagGgcacctctcatcgtccttcc	6	22	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159653426	T	T	159653426	3	4	75	1	0	0	0	0	1	0	0	0	6026	1232	43	2	1924	2	FNDC1	6	159653426	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4150174	159653426	11461641	520	82480											
FNDC1	84624	broad.mit.edu	37	chr6	159653965	159653965	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggaggccacggcccagacGctgcgggcccggcctgcctc	16	18	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159653965	C	C	159653965	2	2	75	1	0	0	0	0	0	0	0	1	6026	1074	38	4		4	FNDC1	6	159653965	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	539	159653965	11461102	521	82481											
PNLDC1	154197	broad.mit.edu	37	chr6	160229982	160229982	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccttttgtttagagatgcaGagccatttctttaggcctca	8	9	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160229982	A	A	160229982	1	1	75	0	1	0	0	0	0	0	0	0	12243	957	33	4		4	PNLDC1	6	160229982	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	576017	160229982	10885085	522	82482											
LPA	4018	broad.mit.edu	37	chr6	160999597	160999597	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttggaaccggggccactgTgggagttgtgaggacactcg	17	9	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160999597	A	A	160999597	3	1	75	1	0	0	0	0	1	0	0	0	8990	1696	59	5	1745	5	LPA	6	160999597	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	769615	160999597	10115470	523	82483											
LPA	4018	broad.mit.edu	37	chr6	161043470	161043470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcataatgtgatcttctcaCctccagatttcccttctgct	4	13	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161043470	A	A	161043470	1	1	75	0	1	0	0	0	0	0	0	0	8990	522	18	3		3	LPA	6	161043470	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	43873	161043470	10071597	524	82484											
MAP3K4	4216	broad.mit.edu	37	chr6	161518108	161518108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgttgccatttttgctgGcagccattcatcggaacagc	9	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161518108	T	T	161518108	1	4	75	0	1	0	0	0	0	0	0	0	9344	1218	42	3		3	MAP3K4	6	161518108	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	474638	161518108	9596959	525	82485											
C6orf118	168090	broad.mit.edu	37	chr6	165706821	165706821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcttccaagttgacagaCaggcagccacactgcagcag	10	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165706821	A	A	165706821	1	1	75	0	1	0	0	0	0	0	0	0	2346	493	17	3		3	C6orf118	6	165706821	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4188713	165706821	5408246	526	82486											
WDR27	253769	broad.mit.edu	37	chr6	170072269	170072269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttacccaagggaaacacCccttgggtggtaccaagtat	10	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170072269	A	A	170072269	1	1	75	0	1	0	0	0	0	0	0	0	17411	638	22	2		2	WDR27	6	170072269	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4365448	170072269	1042798	527	82487											
CARD11	84433	broad.mit.edu	37	chr7	2963022	2963022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgaaaagagaaaagccCtactgggacacaccgggggt	15	9	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2963022	A	A	2963022	1	1	75	0	1	0	0	0	0	0	0	0	2671	696	24	2		2	CARD11	7	2963022	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08		2963022	156175641	528	82488											
SDK1	221935	broad.mit.edu	37	chr7	3658732	3658732	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatgttgctccatattttAaaacggagccaggcctacca	8	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3658732	G	G	3658732	3	3	75	1	0	0	0	0	1	0	0	0	14081	363	13	5	325	5	SDK1	7	3658732	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	695710	3658732	155479931	529	82489											
SDK1	221935	broad.mit.edu	37	chr7	4091270	4091270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccctgttccatctcagCttctggcatggccggcagat	9	14	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4091270	A	A	4091270	3	1	75	1	0	0	0	0	1	0	0	0	14081	811	28	3	2793	3	SDK1	7	4091270	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	432538	4091270	155047393	530	82490											
MIOS	54468	broad.mit.edu	37	chr7	7613335	7613335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgatacagagcaggtgtGgaggaaccacattttagctg	12	7	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7613335	T	T	7613335	3	4	75	1	0	0	0	0	1	0	0	0	9682	1357	47	2	1231	2	MIOS	7	7613335	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3522065	7613335	151525328	531	82491											
THSD7A	221981	broad.mit.edu	37	chr7	11419006	11419006	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttaaacaaggtttgttttGggaattactatacataattc	6	5	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11419006	A	A	11419006	1	1	75	0	1	0	0	0	0	0	0	0	16002	1363	47	4		4	THSD7A	7	11419006	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3805671	11419006	147719657	532	82492											
TMEM195	392636	broad.mit.edu	37	chr7	15556479	15556479	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaattccttctggctctGgagagagcaggatgggagga	15	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15556479	A	A	15556479	1	1	75	0	1	0	0	0	0	0	0	0	16240	1363	47	4		4	TMEM195	7	15556479	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4137473	15556479	143582184	533	82493											
ANKMY2	57037	broad.mit.edu	37	chr7	16685083	16685084	+	Intron	INS	-	C	C													gccccccgggctccgccacgINSccccccggccaggctggccg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16685084	C	C	16685083	6	5	75	0	1	1	1	0	0	0	0	0	635	1102	38	0		0	ANKMY2	7	16685083	Intron	INS	-	TCGA-17-Z046-01A-01W-0746-08	1128604	16685083	142453580	534	82494											
SNX13	23161	broad.mit.edu	37	chr7	17937112	17937112	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaaattagtaaataattctCcacatgaattagaaaagaac	5	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17937112	T	T	17937112	1	4	75	0	1	0	0	0	0	0	0	0	14998	870	30	4		4	SNX13	7	17937112	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1252029	17937112	141201551	535	82495											
ABCB5	340273	broad.mit.edu	37	chr7	20739701	20739701	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggattattttacggcagagcAggggaaattttaacgatgag	13	4	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20739701	G	G	20739701	2	3	75	1	0	0	0	0	0	0	0	1	44	175	7	5		5	ABCB5	7	20739701	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2802589	20739701	138398962	536	82496											
ABCB5	340273	broad.mit.edu	37	chr7	20768100	20768100	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taagtcgtggaaatagtccgGacctggtagctcacacctgt	11	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20768100	T	T	20768100	1	4	75	0	1	0	0	0	0	0	0	0	44	1189	41	3		3	ABCB5	7	20768100	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	28399	20768100	138370563	537	82497											
DNAH11	8701	broad.mit.edu	37	chr7	21604052	21604052	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaggaacaataagaattgTtgctgtgaggtaggttttac	11	4	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21604052	C	C	21604052	1	2	75	0	1	0	0	0	0	0	0	0	4639	1740	60	5		5	DNAH11	7	21604052	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	835952	21604052	137534611	538	82498											
DNAH11	8701	broad.mit.edu	37	chr7	21908331	21908331	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctcaaaatgctgcttgtGgatacaacagaagtttcttt	9	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21908331	A	A	21908331	1	1	75	0	1	0	0	0	0	0	0	0	4639	1363	47	4		4	DNAH11	7	21908331	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	304279	21908331	137230332	539	82499											
HOXA9	3205	broad.mit.edu	37	chr7	27204712	27204712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggctggagggcaagcccGcgaaggagagcgcaccgggc	19	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27204712	T	T	27204712	3	4	75	1	0	0	0	0	1	0	0	0	7365	1087	38	3	461	3	HOXA9	7	27204712	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5296381	27204712	131933951	540	82500											
JAZF1	221895	broad.mit.edu	37	chr7	28031461	28031461	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttccactctgttaaaaaaGatgtgtttaaaaagtcaata	5	5	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28031461	A	A	28031461	1	1	75	0	1	0	0	0	0	0	0	0	8016	957	33	4		4	JAZF1	7	28031461	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	826749	28031461	131107202	541	82501											
PDE1C	5137	broad.mit.edu	37	chr7	31918701	31918701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcatccccatctgccgCgtgaaggtggaggccagcca	12	14	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31918701	A	A	31918701	2	1	75	1	0	0	0	0	0	0	0	1	11729	755	27	3		3	PDE1C	7	31918701	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3887240	31918701	127219962	542	82502											
BMPER	168667	broad.mit.edu	37	chr7	34085793	34085793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggggaaaatcacatgggCctgagcagtcagtctaggga	14	8	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34085793	T	T	34085793	1	4	75	0	1	0	0	0	0	0	0	0	1474	754	26	4		4	BMPER	7	34085793	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2167092	34085793	125052870	543	82503											
C7orf10	79783	broad.mit.edu	37	chr7	40488937	40488937	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggagcaggaaataaccagCagtttgccaccgtctgcaag	11	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40488937	G	G	40488937	3	3	75	1	0	0	0	0	1	0	0	0	2401	711	25	4	816	4	C7orf10	7	40488937	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6403144	40488937	118649726	544	82504											
GLI3	2737	broad.mit.edu	37	chr7	42079691	42079691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgctgaagagctgctaCgggaattattgagaatcgtg	12	7	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42079691	A	A	42079691	3	1	75	1	0	0	0	0	1	0	0	0	6503	536	19	3	3804	3	GLI3	7	42079691	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1590754	42079691	117058972	545	82505											
HECW1	23072	broad.mit.edu	37	chr7	43400571	43400571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcacggtcaaaaactcgGcagctcctgtaagtctcatt	9	11	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43400571	T	T	43400571	3	4	75	1	0	0	0	0	1	0	0	0	7109	1203	42	3	561	3	HECW1	7	43400571	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1320880	43400571	115738092	546	82506											
HECW1	23072	broad.mit.edu	37	chr7	43580968	43580968	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actattttgccctaaccattCctgttagggttatggtggct	9	9	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43580968	A	A	43580968	1	1	75	0	1	0	0	0	0	0	0	0	7109	870	30	3		3	HECW1	7	43580968	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	180397	43580968	115557695	547	82507											
GCK	2645	broad.mit.edu	37	chr7	44198579	44198579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcgccttccctgcccCcagccttagttttggtaatc	7	17	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44198579	A	A	44198579	1	1	75	0	1	0	0	0	0	0	0	0	6355	638	22	2		2	GCK	7	44198579	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	617611	44198579	114940084	548	82508											
ADCY1	107	broad.mit.edu	37	chr7	45753204	45753204	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcagtcagggtggacagcAacagatgcaggatggagtgt	18	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45753204	T	T	45753204	1	4	75	0	1	0	0	0	0	0	0	0	292	145	5	5		5	ADCY1	7	45753204	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1554625	45753204	113385459	549	82509											
UPP1	7378	broad.mit.edu	37	chr7	48139214	48139214	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacttctgtgataatgtcGgctgtcgggcactgatgttc	12	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48139214	T	T	48139214	1	4	75	0	1	0	0	0	0	0	0	0	17138	1131	39	1		1	UPP1	7	48139214	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2386010	48139214	110999449	550	82510											
IKZF1	10320	broad.mit.edu	37	chr7	50455158	50455158	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcatgggccttccgggcacActgtacccaggtaagcgctg	13	13	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50455158	T	T	50455158	2	4	75	1	0	0	0	0	0	0	0	1	7684	146	6	5		5	IKZF1	7	50455158	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2315944	50455158	108683505	551	82511											
GRB10	2887	broad.mit.edu	37	chr7	50682328	50682328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtacaataaatgtttttaCaggaatggataaatccagtg	9	4	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50682328	A	A	50682328	1	1	75	0	1	0	0	0	0	0	0	0	6822	493	17	3		3	GRB10	7	50682328	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	227170	50682328	108456335	552	82512											
SEPT14	346288	broad.mit.edu	37	chr7	55878825	55878825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcccgcggtgatatccaGgtcagctgttgctgcctctt	11	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55878825	T	T	55878825	1	4	75	0	1	0	0	0	0	0	0	0	14176	1015	35	2		2	SEPT14	7	55878825	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5196497	55878825	103259838	553	82513											
ZNF479	90827	broad.mit.edu	37	chr7	57188925	57188925	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaatatattctacacatgAaatatataaaattacacaag	2	5	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188925	T	T	57188925	1	4	75	0	1	0	0	0	0	0	0	0	18060	261	9	5		5	ZNF479	7	57188925	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1310100	57188925	101949738	554	82514											
ZNF735	730291	broad.mit.edu	37	chr7	63673480	63673480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttcagggactgttgaCattcagagacatagctatag	9	6	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63673480	A	A	63673480	3	1	75	1	0	0	0	0	1	0	0	0	18253	478	17	3	56	3	ZNF735	7	63673480	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6484555	63673480	95465183	555	82515											
TYW1B	441250	broad.mit.edu	37	chr7	72081520	72081520	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagacagaatttagtgctTtcttatttttgttttgggaa	9	4	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72081520	C	C	72081520	1	2	75	0	1	0	0	0	0	0	0	0	16945	1856	64	5		5	TYW1B	7	72081520	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	8408040	72081520	87057143	556	82516											
MAGI2	9863	broad.mit.edu	37	chr7	78116343	78116343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacaaagagaaatgtaacCaacgaaggaccaatacactg	8	9	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78116343	A	A	78116343	1	1	75	0	1	0	0	0	0	0	0	0	9283	609	21	2		2	MAGI2	7	78116343	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6034823	78116343	81022320	557	82517											
CACNA2D1	781	broad.mit.edu	37	chr7	81591439	81591439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcacagagcaaaataaaCgtataagaccaggacccctc	6	12	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81591439	A	A	81591439	1	1	75	0	1	0	0	0	0	0	0	0	2574	551	19	3		3	CACNA2D1	7	81591439	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3475096	81591439	77547224	558	82518											
ABCB4	5244	broad.mit.edu	37	chr7	87055958	87055958	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctttacaaagagtatggctCatagtagcagtcatctgtgc	9	8	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87055958	G	G	87055958	1	3	75	0	1	0	0	0	0	0	0	0	43	841	29	4		4	ABCB4	7	87055958	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5464519	87055958	72082705	559	82519											
ZNF804B	219578	broad.mit.edu	37	chr7	88962877	88962877	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgacaccaattacaatcagAcaggcgttgtttgtttggaa	9	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88962877	T	T	88962877	3	4	75	1	0	0	0	0	1	0	0	0	18300	275	10	5	595	5	ZNF804B	7	88962877	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1906919	88962877	70175786	560	82520											
C7orf63	79846	broad.mit.edu	37	chr7	89900852	89900852	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgttaggttaccagcaagCgagttcatcatacaagattc	9	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89900852	T	T	89900852	3	4	75	1	0	0	0	0	1	0	0	0	2434	768	27	4	571	4	C7orf63	7	89900852	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	937975	89900852	69237811	561	82521											
CDK14	5218	broad.mit.edu	37	chr7	90546828	90546828	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggttacccattttccctaAatattaatacaagtacttag	4	8	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90546828	T	T	90546828	1	4	75	0	1	0	0	0	0	0	0	0	3160	29	1	5		5	CDK14	7	90546828	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	645976	90546828	68591835	562	82522											
PVRIG	79037	broad.mit.edu	37	chr7	99817833	99817833	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtctggctccatctcccTggtgactgtgagctgggggg	18	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99817833	C	C	99817833	3	2	75	1	0	0	0	0	1	0	0	0	12946	1580	55	5	221	5	PVRIG	7	99817833	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	9271005	99817833	59320830	563	82523											
EPHB4	2050	broad.mit.edu	37	chr7	100410563	100410563	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttgattgccacacagcTctccttcttccctggggcct	9	15	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100410563	A	A	100410563	3	1	75	1	0	0	0	0	1	0	0	0	5219	1551	54	5	1063	5	EPHB4	7	100410563	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	592730	100410563	58728100	564	82524											
EPHB4	2050	broad.mit.edu	37	chr7	100410850	100410850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagaaatcaggcagggcCccgtcagctgggaattaact	12	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100410850	A	A	100410850	1	1	75	0	1	0	0	0	0	0	0	0	5219	638	22	2		2	EPHB4	7	100410850	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	287	100410850	58727813	565	82525											
TRIP6	7205	broad.mit.edu	37	chr7	100469127	100469127	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgagctgccatggctccCgcccgctcccagatcttcct	9	17	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100469127	T	T	100469127	1	4	75	0	1	0	0	0	0	0	0	0	16684	667	23	4		4	TRIP6	7	100469127	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	58277	100469127	58669536	566	82526											
MUC17	140453	broad.mit.edu	37	chr7	100684927	100684927	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctgtcagcaccacgccGgtggtcagttctgaggttaa	12	11	3	1	rs142563202		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100684927	T	T	100684927	2	4	75	1	0	0	0	0	0	0	0	1	10068	1103	39	1		1	MUC17	7	100684927	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	215800	100684927	58453736	567	82527											
SERPINE1	5054	broad.mit.edu	37	chr7	100771627	100771627	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctcccctcccctcccgccTgtcttccagaacgattcctt	5	20	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100771627	A	A	100771627	1	1	75	0	1	0	0	0	0	0	0	0	14224	1595	55	5		5	SERPINE1	7	100771627	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	86700	100771627	58367036	568	82528											
LRRN3	54674	broad.mit.edu	37	chr7	110763583	110763583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaggcttattaaagtacCccatgttgctcttcaaaaag	6	9	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763583	A	A	110763583	3	1	75	1	0	0	0	0	1	0	0	0	9123	623	22	2	757	2	LRRN3	7	110763583	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	9991956	110763583	48375080	569	82529											
DOCK4	9732	broad.mit.edu	37	chr7	111480998	111480998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattttgtgaaagacaagacCagggcatatttctcgccata	9	8	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111480998	A	A	111480998	1	1	75	0	1	0	0	0	0	0	0	0	4729	609	21	2		2	DOCK4	7	111480998	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	717415	111480998	47657665	570	82530											
FOXP2	93986	broad.mit.edu	37	chr7	114329697	114329697	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtctctaaccagctcacGcaatcaatcagatgcccttt	5	14	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114329697	A	A	114329697	1	1	75	0	1	0	0	0	0	0	0	0	6087	1102	38	4		4	FOXP2	7	114329697	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2848699	114329697	44808966	571	82531											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432023	117432023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgcctggtgtttgagcGgtgggaggggcagcgttact	18	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117432023	T	T	117432023	2	4	75	1	0	0	0	0	0	0	0	1	4079	1103	39	1		1	CTTNBP2	7	117432023	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3102326	117432023	41706640	572	82532											
PTPRZ1	5803	broad.mit.edu	37	chr7	121568037	121568037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcactagctaccagaactaGggcattggagtgtataatat	10	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121568037	T	T	121568037	1	4	75	0	1	0	0	0	0	0	0	0	12922	1015	35	2		2	PTPRZ1	7	121568037	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4136014	121568037	37570626	573	82533											
SLC13A1	6561	broad.mit.edu	37	chr7	122755733	122755733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaggaaagagcataaatGtcagtgtcccagaagaaagc	11	7	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122755733	T	T	122755733	1	4	75	0	1	0	0	0	0	0	0	0	14504	1392	48	3		3	SLC13A1	7	122755733	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1187696	122755733	36382930	574	82534											
FLNC	2318	broad.mit.edu	37	chr7	128488844	128488844	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgacctctgcttctccctCaggaccccgagggtaagccc	9	17	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128488844	A	A	128488844	1	1	75	0	1	0	0	0	0	0	0	0	5993	841	29	3		3	FLNC	7	128488844	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5733111	128488844	30649819	575	82535											
AHCYL2	23382	broad.mit.edu	37	chr7	129043137	129043137	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatctgtaaattgctaattaGattgggatgcaagacccaga	9	6	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129043137	T	T	129043137	1	4	75	0	1	0	0	0	0	0	0	0	411	957	33	3		3	AHCYL2	7	129043137	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	554293	129043137	30095526	576	82536											
CPA4	51200	broad.mit.edu	37	chr7	129938451	129938451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatttttaatggccataCattaaaaccaaagactagac	4	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129938451	A	A	129938451	1	1	75	0	1	0	0	0	0	0	0	0	3824	493	17	3		3	CPA4	7	129938451	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	895314	129938451	29200212	577	82537											
CPA5	93979	broad.mit.edu	37	chr7	129999468	129999468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaggccatggcgaaatcCcgccggctggagcgcagcac	14	14	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129999468	A	A	129999468	2	1	75	1	0	0	0	0	0	0	0	1	3825	610	22	2		2	CPA5	7	129999468	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	61017	129999468	29139195	578	82538											
CPA1	1357	broad.mit.edu	37	chr7	130021888	130021888	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggacggtggggctgctaAgggaagcatctgggtgccca	18	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130021888	G	G	130021888	1	3	75	0	1	0	0	0	0	0	0	0	3821	87	3	5		5	CPA1	7	130021888	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	22420	130021888	29116775	579	82539											
AKR1B15	441282	broad.mit.edu	37	chr7	134260952	134260952	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgctgaggcttcagagccCggggaaaggacccaagcttc	13	11	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134260952	T	T	134260952	1	4	75	0	1	0	0	0	0	0	0	0	468	667	23	4		4	AKR1B15	7	134260952	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4239064	134260952	24877711	580	82540											
CALD1	800	broad.mit.edu	37	chr7	134576377	134576377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaactgcggacatgctGggtggatccggatcgcatgg	14	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134576377	T	T	134576377	1	4	75	0	1	0	0	0	0	0	0	0	2607	1335	47	2		2	CALD1	7	134576377	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	315425	134576377	24562286	581	82541											
DGKI	9162	broad.mit.edu	37	chr7	137150880	137150880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacgtgtcaaaggatcacaCtgtgttgtcagaagcttgat	10	8	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137150880	A	A	137150880	1	1	75	0	1	0	0	0	0	0	0	0	4511	580	20	3		3	DGKI	7	137150880	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2574503	137150880	21987783	582	82542											
DGKI	9162	broad.mit.edu	37	chr7	137271839	137271839	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtccccgagagcagttcTtacccctccccagttgagag	10	15	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137271839	G	G	137271839	1	3	75	0	1	0	0	0	0	0	0	0	4511	1624	56	5		5	DGKI	7	137271839	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	120959	137271839	21866824	583	82543											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138406664	138406664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctccatggtcgtccagaGccccgtgggtatctgcagaa	11	13	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138406664	T	T	138406664	3	4	75	1	0	0	0	0	1	0	0	0	1174	971	34	3	421	3	ATP6V0A4	7	138406664	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1134825	138406664	20731999	584	82544											
HIPK2	28996	broad.mit.edu	37	chr7	139285162	139285162	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtggctctcaccacctaCctcacagatgactggtgctg	11	13	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139285162	G	G	139285162	5	3	75	1	0	0	0	0	0	0	1	0	7184	521	18	4	1180	4	HIPK2	7	139285162	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	878498	139285162	19853501	585	82545											
ADCK2	90956	broad.mit.edu	37	chr7	140386994	140386994	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcggagctgcaggcccctGacctgaggaatttccgggca	15	12	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140386994	A	A	140386994	3	1	75	1	0	0	0	0	1	0	0	0	289	1290	45	4	1528	4	ADCK2	7	140386994	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1101832	140386994	18751669	586	82546											
OR9A4	130075	broad.mit.edu	37	chr7	141619136	141619136	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgggtgtttgggtttcTttttcaaatctggccggtct	12	7	5	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141619136	C	C	141619136	3	2	75	1	0	0	0	0	1	0	0	0	11343	1609	56	5	463	5	OR9A4	7	141619136	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1232142	141619136	17519527	587	82547											
OR9A4	130075	broad.mit.edu	37	chr7	141619404	141619404	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttctccacttgtgcctcCcacttcacctgtgttgtgat	6	15	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141619404	T	T	141619404	2	4	75	1	0	0	0	0	0	0	0	1	11343	610	22	4		4	OR9A4	7	141619404	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	268	141619404	17519259	588	82548											
KCNH2	3757	broad.mit.edu	37	chr7	150654416	150654416	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacattgtgggttcgctccTttatcttaggtgctatgatc	10	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150654416	A	A	150654416	3	1	75	1	0	0	0	0	1	0	0	0	8102	1609	56	5	2813	5	KCNH2	7	150654416	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	9035012	150654416	8484247	589	82549											
CSMD1	64478	broad.mit.edu	37	chr8	2886896	2886896	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccattggcctggcaccgCaggagcctccagccttctaa	10	16	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2886896	A	A	2886896	2	1	75	1	0	0	0	0	0	0	0	1	3978	697	25	3		3	CSMD1	8	2886896	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08		2886896	143477126	590	82550											
CSMD1	64478	broad.mit.edu	37	chr8	3000299	3000299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtctccccagacaatccCtctctgtgagacagaaccat	7	15	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3000299	A	A	3000299	1	1	75	0	1	0	0	0	0	0	0	0	3978	696	24	2		2	CSMD1	8	3000299	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	113403	3000299	143363723	591	82551											
PRSS55	203074	broad.mit.edu	37	chr8	10390482	10390482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatggactgggaggagtGttcaaagatgtttccaaaac	11	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10390482	T	T	10390482	3	4	75	1	0	0	0	0	1	0	0	0	12740	1377	48	3	679	3	PRSS55	8	10390482	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7390183	10390482	135973540	592	82552											
SGCZ	137868	broad.mit.edu	37	chr8	14022192	14022192	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttcaaatcttttacactgAgcttccacagcatcagctcc	4	14	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14022192	G	G	14022192	2	3	75	1	0	0	0	0	0	0	0	1	14317	291	11	5		5	SGCZ	8	14022192	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3631710	14022192	132341830	593	82553											
SGCZ	137868	broad.mit.edu	37	chr8	14166790	14166790	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctagtaatttaatgcctGgctgtgactactcacttttt	7	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14166790	C	C	14166790	1	2	75	0	1	0	0	0	0	0	0	0	14317	1363	47	4		4	SGCZ	8	14166790	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	144598	14166790	132197232	594	82554											
GFRA2	2675	broad.mit.edu	37	chr8	21562572	21562572	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcccgctgccacgacagcTgcaccagggggacaccacga	12	16	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21562572	C	C	21562572	3	2	75	1	0	0	0	0	1	0	0	0	6412	1580	55	5	440	5	GFRA2	8	21562572	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	7395782	21562572	124801450	595	82555											
NEFM	4741	broad.mit.edu	37	chr8	24775961	24775961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaaaaatcaccagtgagGggggagatggtgctaccaaa	13	6	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24775961	T	T	24775961	3	4	75	1	0	0	0	0	1	0	0	0	10411	1232	43	2	2603	2	NEFM	8	24775961	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3213389	24775961	121588061	596	82556											
EPHX2	2053	broad.mit.edu	37	chr8	27396324	27396324	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagctctgaactttaagTtgcccaaccagggtcccctc	7	16	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27396324	A	A	27396324	1	1	75	0	1	0	0	0	0	0	0	0	5222	1740	60	5		5	EPHX2	8	27396324	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2620363	27396324	118967698	597	82557											
WRN	7486	broad.mit.edu	37	chr8	31030597	31030597	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattaatggacaaaacgaaAaggggaggtctttttagtta	10	3	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31030597	T	T	31030597	3	4	75	1	0	0	0	0	1	0	0	0	17529	11	1	5	4412	5	WRN	8	31030597	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3634273	31030597	115333425	598	82558											
ASH2L	9070	broad.mit.edu	37	chr8	37986075	37986075	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttgggtttaccagattgtGggcatagaattcagttcctg	12	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37986075	C	C	37986075	1	2	75	0	1	0	0	0	0	0	0	0	1046	1363	47	4		4	ASH2L	8	37986075	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6955478	37986075	108377947	599	82559											
ADAM9	8754	broad.mit.edu	37	chr8	38961034	38961034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttcctgttgtcagagatGttgaggatggtgttatgttg	13	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38961034	T	T	38961034	1	4	75	0	1	0	0	0	0	0	0	0	253	1392	48	3		3	ADAM9	8	38961034	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	974959	38961034	107402988	600	82560											
SFRP1	6422	broad.mit.edu	37	chr8	41122667	41122667	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacccgaggctccctcccCaccctgcccccgggagaatc	8	23	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41122667	A	A	41122667	1	1	75	0	1	0	0	0	0	0	0	0	14274	609	21	2		2	SFRP1	8	41122667	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2161633	41122667	105241355	601	82561											
CHRNB3	1142	broad.mit.edu	37	chr8	42586964	42586964	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaactgctccatgaagtttGgatcctggacttatgatggc	11	8	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42586964	C	C	42586964	3	2	75	1	0	0	0	0	1	0	0	0	3423	1349	47	4	532	4	CHRNB3	8	42586964	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1464297	42586964	103777058	602	82562											
HOOK3	84376	broad.mit.edu	37	chr8	42814285	42814285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcttcaggaaagacaggGgggagatgttttaattctgt	12	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42814285	T	T	42814285	1	4	75	0	1	0	0	0	0	0	0	0	7351	1247	43	2		2	HOOK3	8	42814285	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	227321	42814285	103549737	603	82563											
HGSNAT	138050	broad.mit.edu	37	chr8	43048900	43048900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcttctgtttgttaagGtactttaccacaccgaggtg	9	9	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43048900	T	T	43048900	3	4	75	1	0	0	0	0	1	0	0	0	7155	1275	44	3	1432	3	HGSNAT	8	43048900	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	234615	43048900	103315122	604	82564											
PXDNL	137902	broad.mit.edu	37	chr8	52320726	52320726	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaactctgaagtcaacaTatggtgggatcccgtggtct	11	8	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52320726	A	A	52320726	3	1	75	1	0	0	0	0	1	0	0	0	12956	1406	49	5	961	5	PXDNL	8	52320726	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	9271826	52320726	94043296	605	82565											
PXDNL	137902	broad.mit.edu	37	chr8	52359499	52359499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcataagatccctgtcagGtgtgttaaagacacaggcag	11	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52359499	T	T	52359499	1	4	75	0	1	0	0	0	0	0	0	0	12956	1276	44	3		3	PXDNL	8	52359499	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	38773	52359499	94004523	606	82566											
ST18	9705	broad.mit.edu	37	chr8	53038483	53038483	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataattttagttcaaatctgAggaaacctttcttcttgtac	5	7	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53038483	G	G	53038483	1	3	75	0	1	0	0	0	0	0	0	0	15330	319	11	5		5	ST18	8	53038483	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	678984	53038483	93325539	607	82567											
ST18	9705	broad.mit.edu	37	chr8	53077587	53077587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagtgtcacatattggaCagtgatgcagcaattttcat	8	7	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53077587	T	T	53077587	1	4	75	0	1	0	0	0	0	0	0	0	15330	493	17	4		4	ST18	8	53077587	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	39104	53077587	93286435	608	82568											
RP1	6101	broad.mit.edu	37	chr8	55541305	55541305	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgaacttacccaagagaaAgaatataacataggatttgt	9	6	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55541305	G	G	55541305	2	3	75	1	0	0	0	0	0	0	0	1	13643	69	3	5		5	RP1	8	55541305	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2463718	55541305	90822717	609	82569											
LYN	4067	broad.mit.edu	37	chr8	56879473	56879473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggtgagttcctcccactGcccagagcttgcaagggctt	12	12	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56879473	T	T	56879473	1	4	75	0	1	0	0	0	0	0	0	0	9195	1334	46	3		3	LYN	8	56879473	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1338168	56879473	89484549	610	82570											
CA8	767	broad.mit.edu	37	chr8	61192387	61192387	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcttgagtttaggttaatAggagactggtattccccatt	9	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61192387	T	T	61192387	2	4	75	1	0	0	0	0	0	0	0	1	2549	407	15	5		5	CA8	8	61192387	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	4312914	61192387	85171635	611	82571											
CHD7	55636	broad.mit.edu	37	chr8	61769079	61769079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaaattgaggccgaaagaGctgccaagaggcgaaatctc	12	9	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61769079	T	T	61769079	3	4	75	1	0	0	0	0	1	0	0	0	3361	971	34	3	7370	3	CHD7	8	61769079	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	576692	61769079	84594943	612	82572											
CHD7	55636	broad.mit.edu	37	chr8	61769556	61769556	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcattgtatgaaagcCagcttcctccactaaagaaa	7	11	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61769556	T	T	61769556	1	4	75	0	1	0	0	0	0	0	0	0	3361	609	21	4		4	CHD7	8	61769556	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	477	61769556	84594466	613	82573											
ASPH	444	broad.mit.edu	37	chr8	62415837	62415837	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaattgactcttggtgttcgAaattctatcctcacacccaa	6	11	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62415837	C	C	62415837	1	2	75	0	1	0	0	0	0	0	0	0	1057	261	9	5		5	ASPH	8	62415837	3'UTR	SNP	A	TCGA-17-Z046-01A-01W-0746-08	646281	62415837	83948185	614	82574											
TRIM55	84675	broad.mit.edu	37	chr8	67062636	67062636	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacatggctatgagaacaTgaaccacttcacagtcaacc	7	11	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67062636	A	A	67062636	3	1	75	1	0	0	0	0	1	0	0	0	16654	1464	51	5	946	5	TRIM55	8	67062636	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4646799	67062636	79301386	615	82575											
C8orf46	254778	broad.mit.edu	37	chr8	67404650	67404650	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctctggacccctagtcTcgaggcatcctaatccagtc	8	15	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67404650	G	G	67404650	1	3	75	0	1	0	0	0	0	0	0	0	2457	1566	54	5		5	C8orf46	8	67404650	5'Flank	SNP	T	TCGA-17-Z046-01A-01W-0746-08	342014	67404650	78959372	616	82576											
C8orf46	254778	broad.mit.edu	37	chr8	67404671	67404671	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaggcatcctaatccagtcCggctcagggatcattgtaca	10	12	2	0	rs2718995		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67404671	T	T	67404671	1	4	75	0	1	0	0	0	0	0	0	0	2457	667	23	4		4	C8orf46	8	67404671	5'Flank	SNP	C	TCGA-17-Z046-01A-01W-0746-08	21	67404671	78959351	617	82577											
CSPP1	79848	broad.mit.edu	37	chr8	68024266	68024266	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatacagactagaactgttgGaacaaatggctgagcaacag	10	7	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68024266	T	T	68024266	4	4	75	1	0	0	0	0	0	1	0	0	3996	1175	41	3	1327	3	CSPP1	8	68024266	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	619595	68024266	78339756	618	82578											
PREX2	80243	broad.mit.edu	37	chr8	69009408	69009408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaaaagatgattgagcCcaaaggtttcttcagcttaa	11	6	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69009408	A	A	69009408	3	1	75	1	0	0	0	0	1	0	0	0	12583	623	22	2	2611	2	PREX2	8	69009408	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	985142	69009408	77354614	619	82579											
TRPA1	8989	broad.mit.edu	37	chr8	72965926	72965926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctaggagagttttctgGcaatgttggaagtttctgct	13	5	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72965926	T	T	72965926	1	4	75	0	1	0	0	0	0	0	0	0	16702	1218	42	3		3	TRPA1	8	72965926	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3956518	72965926	73398096	620	82580											
ZFHX4	79776	broad.mit.edu	37	chr8	77765788	77765788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatatcagaattgatccaCagcccacctctttagaacat	5	11	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77765788	A	A	77765788	3	1	75	1	0	0	0	0	1	0	0	0	17761	479	17	3	6665	3	ZFHX4	8	77765788	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4799862	77765788	68598234	621	82581											
ZFHX4	79776	broad.mit.edu	37	chr8	77775393	77775393	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctacttcgtctcctgcccTgtctctcagcagtgccccca	7	18	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77775393	G	G	77775393	3	3	75	1	0	0	0	0	1	0	0	0	17761	1580	55	5	9481	5	ZFHX4	8	77775393	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	9605	77775393	68588629	622	82582											
FABP12	646486	broad.mit.edu	37	chr8	82441843	82441843	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgctggctcttcctaTacctggaaaccagataaaag	7	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82441843	C	C	82441843	3	2	75	1	0	0	0	0	1	0	0	0	5402	1406	49	5	356	5	FABP12	8	82441843	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4666450	82441843	63922179	623	82583											
CA2	760	broad.mit.edu	37	chr8	86393098	86393098	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagatctaccttggtgattTggaccctggttgctttgtgt	11	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86393098	C	C	86393098	1	2	75	0	1	0	0	0	0	0	0	0	2542	1827	63	5		5	CA2	8	86393098	3'UTR	SNP	T	TCGA-17-Z046-01A-01W-0746-08	3951255	86393098	59970924	624	82584											
OSGIN2	734	broad.mit.edu	37	chr8	90926624	90926624	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttgaatttattagagcaGagttttctgaattattttct	6	4	3	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90926624	C	C	90926624	1	2	75	0	1	0	0	0	0	0	0	0	11384	957	33	4		4	OSGIN2	8	90926624	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4533526	90926624	55437398	625	82585											
SLC26A7	115111	broad.mit.edu	37	chr8	92261929	92261929	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgctttggagcaagatgcAtaccccccagtgtgaagaca	10	11	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92261929	T	T	92261929	3	4	75	1	0	0	0	0	1	0	0	0	14636	217	8	5	52	5	SLC26A7	8	92261929	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1335305	92261929	54102093	626	82586											
RUNX1T1	862	broad.mit.edu	37	chr8	93026806	93026807	+	Splice_Site	DNP	CC	GA	GA													ggttggtttccatttgcttaCcactagtcccagaacgaggg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	93026807	GA	GA	93026806	5	3	75	1	0	0	0	0	0	0	1	0	13858	521	18	4	1381	4	RUNX1T1	8	93026806	Splice_Site	DNP	CC	TCGA-17-Z046-01A-01W-0746-08	764877	93026806	53337216	627	82587											
DPYS	1807	broad.mit.edu	37	chr8	105441629	105441629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaatgttttttgctctgCaggtgaggggtacccaggac	13	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105441629	A	A	105441629	1	1	75	0	1	0	0	0	0	0	0	0	4786	725	25	3		3	DPYS	8	105441629	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	12414823	105441629	40922393	628	82588											
ANGPT1	284	broad.mit.edu	37	chr8	108334146	108334146	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttctttagtgcaaagattGacaaggttgtggactgtgtc	11	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108334146	A	A	108334146	2	1	75	1	0	0	0	0	0	0	0	1	610	1277	45	4		4	ANGPT1	8	108334146	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2892517	108334146	38029876	629	82589											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457398	110457398	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatctgtaaaagttcttaTtgaaggagaaggtttgggga	14	2	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110457398	C	C	110457398	3	2	75	1	0	0	0	0	1	0	0	0	12067	1493	52	5	5450	5	PKHD1L1	8	110457398	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2123252	110457398	35906624	630	82590											
CSMD3	114788	broad.mit.edu	37	chr8	113332281	113332281	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacatatgcaaaaaaacaaGaaaattatggaaagttgttt	6	4	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113332281	T	T	113332281	1	4	75	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113332281	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2874883	113332281	33031741	631	82591											
CSMD3	114788	broad.mit.edu	37	chr8	113349005	113349005	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttggatattcatcaggatAcccaggagaataaatggtgc	11	6	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113349005	T	T	113349005	3	4	75	1	0	0	0	0	1	0	0	0	3980	391	14	5	4340	5	CSMD3	8	113349005	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	16724	113349005	33015017	632	82592											
CSMD3	114788	broad.mit.edu	37	chr8	114110998	114110998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttaccatatggtaggtgGctcagaaccttctatttcta	7	9	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114110998	T	T	114110998	3	4	75	1	0	0	0	0	1	0	0	0	3980	1203	42	3	10487	3	CSMD3	8	114110998	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	761993	114110998	32253024	633	82593											
CSMD3	114788	broad.mit.edu	37	chr8	114291012	114291012	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggattaaagtcatatttAaaaaaaataataaaacagat	5	2	1	1	rs77721390		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114291012	T	T	114291012	1	4	75	0	1	0	0	0	0	0	0	0	3980	377	13	5		5	CSMD3	8	114291012	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	180014	114291012	32073010	634	82594											
MTBP	27085	broad.mit.edu	37	chr8	121475863	121475863	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggaagaattgaaataatGaaacttattttaaggagtac	9	2	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121475863	T	T	121475863	1	4	75	0	1	0	0	0	0	0	0	0	10006	1305	45	3		3	MTBP	8	121475863	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7184851	121475863	24888159	635	82595											
WDR67	93594	broad.mit.edu	37	chr8	124140660	124140660	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgacaaaagggcagtatcCagtatttaatcaatatccaa	6	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124140660	T	T	124140660	3	4	75	1	0	0	0	0	1	0	0	0	17445	594	21	4	2078	4	WDR67	8	124140660	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2664797	124140660	22223362	636	82596											
ATAD2	29028	broad.mit.edu	37	chr8	124358252	124358252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacaaaaaaacacaataCaaaaaaatggggcaatttta	5	5	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124358252	A	A	124358252	1	1	75	0	1	0	0	0	0	0	0	0	1075	493	17	3		3	ATAD2	8	124358252	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	217592	124358252	22005770	637	82597											
GSDMC	56169	broad.mit.edu	37	chr8	130763637	130763637	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattcttgttgtccaataAgtcctcaataaatgtttgtt	5	6	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130763637	C	C	130763637	1	2	75	0	1	0	0	0	0	0	0	0	6884	87	3	5		5	GSDMC	8	130763637	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	6405385	130763637	15600385	638	82598											
KCNQ3	3786	broad.mit.edu	37	chr8	133141908	133141908	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtgggcctctccacataCgttgttgctgaggaaggagg	14	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133141908	A	A	133141908	2	1	75	1	0	0	0	0	0	0	0	1	8154	523	19	3		3	KCNQ3	8	133141908	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2378271	133141908	13222114	639	82599											
COL22A1	169044	broad.mit.edu	37	chr8	139611081	139611081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggcctgggattccagGgtccccaggctggccttttc	13	12	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139611081	T	T	139611081	3	4	75	1	0	0	0	0	1	0	0	0	3713	1232	43	2	654	2	COL22A1	8	139611081	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6469173	139611081	6752941	640	82600											
COL22A1	169044	broad.mit.edu	37	chr8	139791742	139791742	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagggcccagctcacagCaacactcacccgcatgccga	9	17	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139791742	T	T	139791742	1	4	75	0	1	0	0	0	0	0	0	0	3713	725	25	4		4	COL22A1	8	139791742	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	180661	139791742	6572280	641	82601											
COL22A1	169044	broad.mit.edu	37	chr8	139838887	139838887	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaccactgagataaggcaTctgctgcccttacctgtggg	12	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139838887	C	C	139838887	1	2	75	0	1	0	0	0	0	0	0	0	3713	1450	50	5		5	COL22A1	8	139838887	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	47145	139838887	6525135	642	82602											
PTK2	5747	broad.mit.edu	37	chr8	141874421	141874421	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctaatacctgttgatagAagaaattcaaagttggctta	7	6	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141874421	C	C	141874421	3	2	75	1	0	0	0	0	1	0	0	0	12868	246	9	5	2830	5	PTK2	8	141874421	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2035534	141874421	4489601	643	82603											
GML	2765	broad.mit.edu	37	chr8	143922666	143922666	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacctctttgtcattttgaCacattgtagattagtcccct	6	10	2	2	rs77596800	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143922666	G	G	143922666	1	3	75	0	1	0	0	0	0	0	0	0	6556	493	17	4		4	GML	8	143922666	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2048245	143922666	2441356	644	82604											
CYC1	1537	broad.mit.edu	37	chr8	145151544	145151544	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctactgcgagccacccacCggggtgtcactgcgggaagg	16	13	1	0	rs143508925		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145151544	T	T	145151544	2	4	75	1	0	0	0	0	0	0	0	1	4168	639	23	4		4	CYC1	8	145151544	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1228878	145151544	1212478	645	82605											
C9orf68	55064	broad.mit.edu	37	chr9	4666136	4666136	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtgggggatgtgggggAgggttgttgaaaaccacctg	19	4	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4666136	G	G	4666136	1	3	75	0	1	0	0	0	0	0	0	0	2517	319	11	5		5	C9orf68	9	4666136	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08		4666136	136547295	646	82606											
PTPRD	5789	broad.mit.edu	37	chr9	8713369	8713369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcgccgcctgcccactcCcaaatgccacacaccgcccc	8	22	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8713369	A	A	8713369	1	1	75	0	1	0	0	0	0	0	0	0	12907	638	22	2		2	PTPRD	9	8713369	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4047233	8713369	132500062	647	82607											
PTPRD	5789	broad.mit.edu	37	chr9	8713385	8713385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccaaatgccacacaccGcccctctaccgcatgcgaat	5	19	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8713385	T	T	8713385	1	4	75	0	1	0	0	0	0	0	0	0	12907	1102	38	3		3	PTPRD	9	8713385	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	16	8713385	132500046	648	82608											
FREM1	158326	broad.mit.edu	37	chr9	14863852	14863852	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcaagaattggacaaCcattgtgaacatacttgact	6	9	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14863852	T	T	14863852	3	4	75	1	0	0	0	0	1	0	0	0	6104	507	18	4	6445	4	FREM1	9	14863852	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6150467	14863852	126349579	649	82609											
PSIP1	11168	broad.mit.edu	37	chr9	15469918	15469918	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtataattttatgtatcttaGaaagtgaaataactaacctc	5	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15469918	C	C	15469918	1	2	75	0	1	0	0	0	0	0	0	0	12769	957	33	4		4	PSIP1	9	15469918	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	606066	15469918	125743513	650	82610											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18718527	18718527	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagcttatactcatgcatgAtgcaaacttgtcgaaaccta	6	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18718527	T	T	18718527	1	4	75	0	1	0	0	0	0	0	0	0	274	348	12	5		5	ADAMTSL1	9	18718527	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3248609	18718527	122494904	651	82611											
IFNA21	3452	broad.mit.edu	37	chr9	21166424	21166424	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttgccatcaaactcctccTgggggaatccaaagtcatgt	10	11	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21166424	A	A	21166424	3	1	75	1	0	0	0	0	1	0	0	0	7608	1580	55	5	385	5	IFNA21	9	21166424	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2447897	21166424	120047007	652	82612											
IFNA17	3451	broad.mit.edu	37	chr9	21227931	21227931	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtctgctggatcatctcaTggaggacagagatggcttga	14	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21227931	A	A	21227931	3	1	75	1	0	0	0	0	1	0	0	0	7606	1464	51	5	331	5	IFNA17	9	21227931	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	61507	21227931	119985500	653	82613											
CDKN2A	1029	broad.mit.edu	37	chr9	21971028	21971028	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtccacgggcagacggccCcaggcatcgcgcacgtccag	14	16	0	1	rs121913389		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21971028	G	G	21971028	3	3	75	1	0	0	0	0	1	0	0	0	3191	624	22	4	148	4	CDKN2A	9	21971028	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	743097	21971028	119242403	654	82614											
PLAA	9373	broad.mit.edu	37	chr9	26919280	26919280	+	Intron	SNP	A	T	T													atcaacactaatggaactacAtaagactcaatataaacact							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26919280	T	T	26919280	1	4	75	0	1	0	0	0	0	0	0	0	12106	232	8	5		5	PLAA	9	26919280	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	4948252	26919280	114294151	655	82615	377	2									
PLAA	9373	broad.mit.edu	37	chr9	26919282	26919282	+	Intron	SNP	A	T	T													caacactaatggaactacatAagactcaatataaacactaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26919282	T	T	26919282	1	4	75	0	1	0	0	0	0	0	0	0	12106	377	13	5		5	PLAA	9	26919282	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2	26919282	114294149	656	82616	377	2									
TEK	7010	broad.mit.edu	37	chr9	27109646	27109646	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgctcctttctggtaagGtttggctttattttttttaa	8	6	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27109646	A	A	27109646	1	1	75	0	1	0	0	0	0	0	0	0	15873	1276	44	4		4	TEK	9	27109646	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	190364	27109646	114103785	657	82617											
C9orf24	84688	broad.mit.edu	37	chr9	34380973	34380977	+	Frame_Shift_Del	DEL	CCGCG	-	-													cgctggcgtagtagtccatcCcgcgcagacagtagtggcgg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34380977	-	-	34380973	7	5	75	1	0	1	0	1	0	0	0	0	2501	623	22	0	277	0	C9orf24	9	34380973	Frame_Shift_Del	DEL	CCGCG	TCGA-17-Z046-01A-01W-0746-08	7271327	34380973	106832458	658	82618											
DNAI1	27019	broad.mit.edu	37	chr9	34506861	34506861	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctggcaagcactcagacCctgtgtggcaggtcagcaac	12	12	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34506861	T	T	34506861	3	4	75	1	0	0	0	0	1	0	0	0	4649	623	22	4	1350	4	DNAI1	9	34506861	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	125888	34506861	106706570	659	82619											
FANCG	2189	broad.mit.edu	37	chr9	35074871	35074871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaagtatttcccatgggCctctctgtccttgcacatct	7	15	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35074871	A	A	35074871	1	1	75	0	1	0	0	0	0	0	0	0	5725	754	26	3		3	FANCG	9	35074871	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	568010	35074871	106138560	660	82620											
PIGO	84720	broad.mit.edu	37	chr9	35091867	35091867	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccaccagcgccgccacacAagctccataccacaaattct	6	18	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35091867	G	G	35091867	3	3	75	1	0	0	0	0	1	0	0	0	11989	130	5	5	1272	5	PIGO	9	35091867	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	16996	35091867	106121564	661	82621											
CA9	768	broad.mit.edu	37	chr9	35679160	35679160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcaatgtagatgagaccCcaacatagatcctcttcaca	8	11	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35679160	A	A	35679160	1	1	75	0	1	0	0	0	0	0	0	0	2550	638	22	2		2	CA9	9	35679160	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	587293	35679160	105534271	662	82622											
PIP5K1B	8395	broad.mit.edu	37	chr9	71439190	71439190	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgaccaaattctgactcaCaggagatcctttgtcgctgc	8	12	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71439190	T	T	71439190	1	4	75	0	1	0	0	0	0	0	0	0	12035	493	17	4		4	PIP5K1B	9	71439190	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	35760030	71439190	69774241	663	82623											
SMC5	23137	broad.mit.edu	37	chr9	72914927	72914927	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcactaattaaaattttcaGagaaacaagactttgttttg	5	5	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72914927	A	A	72914927	1	1	75	0	1	0	0	0	0	0	0	0	14900	957	33	4		4	SMC5	9	72914927	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1475737	72914927	68298504	664	82624											
FAM108B1	51104	broad.mit.edu	37	chr9	74489794	74489794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggttctagtcatgaaaCactcaatagcatctttttct	5	9	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74489794	A	A	74489794	3	1	75	1	0	0	0	0	1	0	0	0	5438	478	17	3	706	3	FAM108B1	9	74489794	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1574867	74489794	66723637	665	82625											
TMC1	117531	broad.mit.edu	37	chr9	75315262	75315262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaagttataatagttccaGtaatcctgcatcagtgttca	6	7	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75315262	T	T	75315262	1	4	75	0	1	0	0	0	0	0	0	0	16107	1044	36	3		3	TMC1	9	75315262	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	825468	75315262	65898169	666	82626											
TLE4	7091	broad.mit.edu	37	chr9	82267549	82267549	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatcacatggacatggtctCcccgtacctctgactccaca	6	15	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82267549	T	T	82267549	2	4	75	1	0	0	0	0	0	0	0	1	16064	842	30	4		4	TLE4	9	82267549	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6952287	82267549	58945882	667	82627											
NTRK2	4915	broad.mit.edu	37	chr9	87636068	87636068	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccaagagtgggcttctTttgtaaaagccctctcttct	7	10	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87636068	A	A	87636068	1	1	75	0	1	0	0	0	0	0	0	0	10802	1856	64	5		5	NTRK2	9	87636068	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	5368519	87636068	53577363	668	82628											
NAA35	60560	broad.mit.edu	37	chr9	88611371	88611371	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggctacttccacctaCcttccctcgatatgcaaaaa	5	15	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88611371	T	T	88611371	3	4	75	1	0	0	0	0	1	0	0	0	10217	507	18	4	977	4	NAA35	9	88611371	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	975303	88611371	52602060	669	82629											
FAM75C1	441452	broad.mit.edu	37	chr9	90534313	90534313	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgatctcatctgtccgGgagggaactgactctgaaga	11	8	3	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90534313	T	T	90534313	1	4	75	0	1	0	0	0	0	0	0	0	5676	1247	43	2		2	FAM75C1	9	90534313	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1922942	90534313	50679118	670	82630											
CDK20	23552	broad.mit.edu	37	chr9	90584501	90584501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacactgcacatgtgtgtaCtggggtgaaaagggacaaag	14	6	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90584501	A	A	90584501	1	1	75	0	1	0	0	0	0	0	0	0	3167	580	20	3		3	CDK20	9	90584501	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	50188	90584501	50628930	671	82631											
GABBR2	9568	broad.mit.edu	37	chr9	101369240	101369240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcttgcccgcggctcCgcctgcatccaaaccgctgc	9	19	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101369240	A	A	101369240	1	1	75	0	1	0	0	0	0	0	0	0	6216	667	23	1		1	GABBR2	9	101369240	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	10784739	101369240	39844191	672	82632											
ALG2	85365	broad.mit.edu	37	chr9	101980734	101980734	+	Frame_Shift_Del	DEL	C	-	-													acgcagctgtactagggcttCcagtgccaaagtcagatttt							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101980734	-	-	101980734	7	5	75	1	0	1	0	1	0	0	0	0	519	864	30	0	521	0	ALG2	9	101980734	Frame_Shift_Del	DEL	C	TCGA-17-Z046-01A-01W-0746-08	611494	101980734	39232697	673	82633											
NR4A3	8013	broad.mit.edu	37	chr9	102625881	102625881	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcctcctaaacttcttgCccttctctatccctctgcag	4	16	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102625881	T	T	102625881	1	4	75	0	1	0	0	0	0	0	0	0	10729	754	26	4		4	NR4A3	9	102625881	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	645147	102625881	38587550	674	82634											
ALDOB	229	broad.mit.edu	37	chr9	104192380	104192380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagatagtcaaagctcctGcttcaattttttgtgttcca	6	9	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104192380	T	T	104192380	1	4	75	0	1	0	0	0	0	0	0	0	508	1334	46	3		3	ALDOB	9	104192380	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1566499	104192380	37021051	675	82635											
ABCA1	19	broad.mit.edu	37	chr9	107645539	107645539	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagaactcagcctggctcCcaggtcctccacaggctggc	10	16	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107645539	T	T	107645539	1	4	75	0	1	0	0	0	0	0	0	0	28	638	22	4		4	ABCA1	9	107645539	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3453159	107645539	33567892	676	82636											
ZNF462	58499	broad.mit.edu	37	chr9	109736636	109736637	+	Intron	DNP	GG	TT	TT													tagggatgctctctcagagtGgcagtagcacctgtgccttg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	109736637	TT	TT	109736636	1	4	75	0	1	0	0	0	0	0	0	0	18053	1363	47	2		2	ZNF462	9	109736636	Intron	DNP	GG	TCGA-17-Z046-01A-01W-0746-08	2091097	109736636	31476795	677	82637											
C9orf5	23731	broad.mit.edu	37	chr9	111812963	111812963	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcataacgatccacagagActccaagatctgacgaggaa	9	11	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111812963	G	G	111812963	3	3	75	1	0	0	0	0	1	0	0	0	2512	275	10	5	799	5	C9orf5	9	111812963	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2076327	111812963	29400468	678	82638											
WDR31	114987	broad.mit.edu	37	chr9	116080656	116080656	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggacagtggcagaagatGggtggctttgtaatgctgag	16	5	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116080656	A	A	116080656	1	1	75	0	1	0	0	0	0	0	0	0	17413	1363	47	4		4	WDR31	9	116080656	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4267693	116080656	25132775	679	82639											
COL27A1	85301	broad.mit.edu	37	chr9	116967939	116967939	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatctcacattcctgcccCtctctttattcattgtcagc	3	16	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116967939	T	T	116967939	1	4	75	0	1	0	0	0	0	0	0	0	3717	696	24	4		4	COL27A1	9	116967939	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	887283	116967939	24245492	680	82640											
TNC	3371	broad.mit.edu	37	chr9	117825220	117825220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgacctctacagcaagggGtcgagtgctgtggcccctga	14	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117825220	T	T	117825220	3	4	75	1	0	0	0	0	1	0	0	0	16393	1261	44	3	2660	3	TNC	9	117825220	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	857281	117825220	23388211	681	82641											
C5	727	broad.mit.edu	37	chr9	123782545	123782545	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattattttccttgctttaTaaatttctaaatttcacaat	1	6	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123782545	C	C	123782545	1	2	75	0	1	0	0	0	0	0	0	0	2303	1421	49	5		5	C5	9	123782545	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	5957325	123782545	17430886	682	82642											
LHX6	26468	broad.mit.edu	37	chr9	124971874	124971874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctctgacccaccagacCcaacctggctccatttacct	7	17	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124971874	A	A	124971874	1	1	75	0	1	0	0	0	0	0	0	0	8847	638	22	2		2	LHX6	9	124971874	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1189329	124971874	16241557	683	82643											
OR1B1	347169	broad.mit.edu	37	chr9	125391866	125391866	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtcaaaaagaaagtcatGggtctgatgttagggatcat	11	4	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125391866	T	T	125391866	1	4	75	0	1	0	0	0	0	0	0	0	11045	1363	47	2		2	OR1B1	9	125391866	5'Flank	SNP	G	TCGA-17-Z046-01A-01W-0746-08	419992	125391866	15821565	684	82644											
STRBP	55342	broad.mit.edu	37	chr9	125946282	125946282	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgaatagtagagtgccatCtttatatgacacactaaagc	7	7	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125946282	G	G	125946282	1	3	75	0	1	0	0	0	0	0	0	0	15445	928	32	4		4	STRBP	9	125946282	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	554416	125946282	15267149	685	82645											
NR5A1	2516	broad.mit.edu	37	chr9	127262395	127262395	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccttgaagaccatgcaccTgcgtgcccagtccacgatgg	10	15	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127262395	A	A	127262395	3	1	75	1	0	0	0	0	1	0	0	0	10730	1579	55	5	557	5	NR5A1	9	127262395	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1316113	127262395	13951036	686	82646											
GOLGA1	2800	broad.mit.edu	37	chr9	127660732	127660732	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaacaaatgctaattctcctCctcctgtactgtaagtatga	6	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127660732	A	A	127660732	1	1	75	0	1	0	0	0	0	0	0	0	6615	870	30	3		3	GOLGA1	9	127660732	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	398337	127660732	13552699	687	82647											
RALGDS	5900	broad.mit.edu	37	chr9	135979811	135979811	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtggtcgggttccagGgctgaccctgtatcaatact	12	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135979811	A	A	135979811	1	1	75	0	1	0	0	0	0	0	0	0	13124	1247	43	4		4	RALGDS	9	135979811	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	8319079	135979811	5233620	688	82648											
WDR5	11091	broad.mit.edu	37	chr9	137021782	137021782	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagttcctgcaggtgaagCgtggtgtgcccgtagggtgc	17	9	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137021782	T	T	137021782	1	4	75	0	1	0	0	0	0	0	0	0	17430	783	27	4		4	WDR5	9	137021782	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1041971	137021782	4191649	689	82649											
LCN1	3933	broad.mit.edu	37	chr9	138413881	138413881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgagcctgatagagaggGgccttctccaggtgtcaggg	16	10	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138413881	T	T	138413881	1	4	75	0	1	0	0	0	0	0	0	0	8752	1247	43	2		2	LCN1	9	138413881	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1392099	138413881	2799550	690	82650											
LCN1	3933	broad.mit.edu	37	chr9	138416980	138416980	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttccttttcctgcagaaAcctgctctccagggagcgat	9	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138416980	G	G	138416980	3	3	75	1	0	0	0	0	1	0	0	0	8752	43	2	5	530	5	LCN1	9	138416980	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3099	138416980	2796451	691	82651											
PAEP	5047	broad.mit.edu	37	chr9	138457240	138457240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggggcccaggactgacCcagcctcttccacagccaga	10	18	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138457240	A	A	138457240	1	1	75	0	1	0	0	0	0	0	0	0	11476	638	22	2		2	PAEP	9	138457240	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	40260	138457240	2756191	692	82652											
CACNA1B	774	broad.mit.edu	37	chr9	140968156	140968156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgggaggctgggagagGgtatggcatgcaggtttcgt	18	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140968156	T	T	140968156	1	4	75	0	1	0	0	0	0	0	0	0	2565	1247	43	2		2	CACNA1B	9	140968156	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2510916	140968156	245275	693	82653											
TUBAL3	79861	broad.mit.edu	37	chr10	5435356	5435356	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaatttagtgtggaacctaGagtcttgcctgatttgagtt	10	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5435356	A	A	5435356	1	1	75	0	1	0	0	0	0	0	0	0	16877	957	33	4		4	TUBAL3	10	5435356	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08		5435356	130099391	694	82654											
ITIH2	3698	broad.mit.edu	37	chr10	7786038	7786039	+	Intron	DNP	CC	AG	AG													aaaacatcatttttttctttCctgtaggaattgtagtcaac							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	7786039	AG	AG	7786038	1	1	75	0	1	0	0	0	0	0	0	0	7974	870	30	3		3	ITIH2	10	7786038	Intron	DNP	CC	TCGA-17-Z046-01A-01W-0746-08	2350682	7786038	127748709	695	82655											
TAF3	83860	broad.mit.edu	37	chr10	8006284	8006284	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaagtcatttacacctAaaacaaagactaaaactagc	3	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8006284	G	G	8006284	3	3	75	1	0	0	0	0	1	0	0	0	15644	363	13	5	821	5	TAF3	10	8006284	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	220246	8006284	127528463	696	82656											
CCDC3	83643	broad.mit.edu	37	chr10	13100365	13100365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagaatcctgtgggtcaGcagcagtccaggacaatacg	12	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13100365	T	T	13100365	1	4	75	0	1	0	0	0	0	0	0	0	2831	986	34	3		3	CCDC3	10	13100365	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5094081	13100365	122434382	697	82657											
FRMD4A	55691	broad.mit.edu	37	chr10	13804512	13804512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttgtggctaaaaaaagGtaagacgacaaatagtgagt	11	5	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13804512	T	T	13804512	1	4	75	0	1	0	0	0	0	0	0	0	6111	1276	44	3		3	FRMD4A	10	13804512	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	704147	13804512	121730235	698	82658											
NEBL	10529	broad.mit.edu	37	chr10	21076311	21076311	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccatcccaaaccctcagaGtgatgttatgctctgctaga	7	13	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21076311	A	A	21076311	1	1	75	0	1	0	0	0	0	0	0	0	10398	1044	36	4		4	NEBL	10	21076311	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7271799	21076311	114458436	699	82659											
PTF1A	256297	broad.mit.edu	37	chr10	23482479	23482479	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacttgcagctcctcggattCctgggaggggacggtgggga	18	9	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23482479	G	G	23482479	1	3	75	0	1	0	0	0	0	0	0	0	12846	870	30	4		4	PTF1A	10	23482479	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2406168	23482479	112052268	700	82660			1	63		3	3	318	C		8.14906e-05
PTF1A	256297	broad.mit.edu	37	chr10	23482715	23482715	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggactgatgaaaaacaactCaaggaacaaaatattatccg	7	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23482715	G	G	23482715	2	3	75	1	0	0	0	0	0	0	0	1	12846	813	29	4		4	PTF1A	10	23482715	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	236	23482715	112052032	701	82661			1	63		3	3	318	C		8.14906e-05
PTF1A	256297	broad.mit.edu	37	chr10	23482796	23482796	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagcaaatcttccttcaaCaacatagaaaacgaaccacc	3	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23482796	T	T	23482796	2	4	75	1	0	0	0	0	0	0	0	1	12846	477	17	4		4	PTF1A	10	23482796	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	81	23482796	112051951	702	82662			1	63		3	3	318	C		8.14906e-05
MTPAP	55149	broad.mit.edu	37	chr10	30656663	30656663	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggagctgcttttggcctCacacctcccctccccagagg	10	17	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30656663	T	T	30656663	1	4	75	0	1	0	0	0	0	0	0	0	10050	841	29	4		4	MTPAP	10	30656663	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7173867	30656663	104878084	703	82663			2	64	7173867	7	7	1675	C		1.263043e-10
MTPAP	55149	broad.mit.edu	37	chr10	30656684	30656684	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacctcccctccccagaggCtggtgctcacctcccagccc	7	22	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30656684	T	T	30656684	1	4	75	0	1	0	0	0	0	0	0	0	10050	812	28	4		4	MTPAP	10	30656684	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	21	30656684	104878063	704	82664			2	64	7173867	7	7	1675	C		1.263043e-10
MTPAP	55149	broad.mit.edu	37	chr10	30657796	30657796	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaatgagcactcctccctCtttgttgatggcgacactga	9	12	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30657796	G	G	30657796	1	3	75	0	1	0	0	0	0	0	0	0	10050	928	32	4		4	MTPAP	10	30657796	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1112	30657796	104876951	705	82665			2	64	7173867	7	7	1675	C		1.263043e-10
MTPAP	55149	broad.mit.edu	37	chr10	30657950	30657950	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgatgccagtcctgctcCcaggccatgccagccccatc	8	19	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30657950	T	T	30657950	1	4	75	0	1	0	0	0	0	0	0	0	10050	638	22	4		4	MTPAP	10	30657950	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	154	30657950	104876797	706	82666			2	64	7173867	7	7	1675	C		1.263043e-10
MTPAP	55149	broad.mit.edu	37	chr10	30658272	30658272	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacctcctctgacattttcCataccctctgctgccaccgg	5	18	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30658272	T	T	30658272	1	4	75	0	1	0	0	0	0	0	0	0	10050	609	21	4		4	MTPAP	10	30658272	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	322	30658272	104876475	707	82667			2	64	7173867	7	7	1675	C		1.263043e-10
MTPAP	55149	broad.mit.edu	37	chr10	30658300	30658300	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgctgccaccgggccctctCtccttttagatgttgagtat	9	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30658300	G	G	30658300	1	3	75	0	1	0	0	0	0	0	0	0	10050	928	32	4		4	MTPAP	10	30658300	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	28	30658300	104876447	708	82668			2	64	7173867	7	7	1675	C		1.263043e-10
MTPAP	55149	broad.mit.edu	37	chr10	30658337	30658337	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatattcatctgtctctagCtggacttgttccaacatctg	7	10	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30658337	G	G	30658337	1	3	75	0	1	0	0	0	0	0	0	0	10050	812	28	4		4	MTPAP	10	30658337	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	37	30658337	104876410	709	82669			2	64	7173867	7	7	1675	C		1.263043e-10
ANKRD30A	91074	broad.mit.edu	37	chr10	37451777	37451777	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaaacattgagagcagGtaaatttttcaatgtaacta	7	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37451777	T	T	37451777	5	4	75	1	0	0	0	0	0	0	1	0	658	1275	44	3	1901	3	ANKRD30A	10	37451777	Splice_Site	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6793440	37451777	98082970	710	82670											
ZNF33B	7582	broad.mit.edu	37	chr10	43089807	43089807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacgatgactcagagtgttCctatttttcaaaacttcatt	5	9	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43089807	A	A	43089807	3	1	75	1	0	0	0	0	1	0	0	0	17981	854	30	3	1749	3	ZNF33B	10	43089807	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5638030	43089807	92444940	711	82671											
BMS1	9790	broad.mit.edu	37	chr10	43279710	43279710	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgaacaaatacatcatctCttcataaagaaataaatgaa	4	6	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43279710	T	T	43279710	1	4	75	0	1	0	0	0	0	0	0	0	1478	928	32	4		4	BMS1	10	43279710	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	189903	43279710	92255037	712	82672											
ANUBL1	93550	broad.mit.edu	37	chr10	46135494	46135494	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatatgaaacagcaatctaTagaagttactaatgataaaa	5	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46135494	C	C	46135494	1	2	75	0	1	0	0	0	0	0	0	0	713	1421	49	5		5	ANUBL1	10	46135494	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2855784	46135494	89399253	713	82673											
FRMPD2	143162	broad.mit.edu	37	chr10	49414763	49414763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaggaaaatgaagtgcaGgttatttatcaactgagcta	9	5	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49414763	T	T	49414763	1	4	75	0	1	0	0	0	0	0	0	0	6118	1015	35	2		2	FRMPD2	10	49414763	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3279269	49414763	86119984	714	82674											
CHAT	1103	broad.mit.edu	37	chr10	50870544	50870544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtcagtcctgagcagccaCtcatacacattgttggcagc	10	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50870544	A	A	50870544	1	1	75	0	1	0	0	0	0	0	0	0	3344	580	20	3		3	CHAT	10	50870544	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1455781	50870544	84664203	715	82675											
OGDHL	55753	broad.mit.edu	37	chr10	50946008	50946008	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccggcttgcggaagggCagcaggatctgccggcgcag	16	13	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50946008	T	T	50946008	2	4	75	1	0	0	0	0	0	0	0	1	10935	697	25	4		4	OGDHL	10	50946008	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	75464	50946008	84588739	716	82676											
MBL2	4153	broad.mit.edu	37	chr10	54531399	54531399	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggaaacagggacatggtCctcaccttggtgtgagaaaa	13	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54531399	A	A	54531399	1	1	75	0	1	0	0	0	0	0	0	0	9443	870	30	3		3	MBL2	10	54531399	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3585391	54531399	81003348	717	82677											
PCDH15	65217	broad.mit.edu	37	chr10	55945097	55945097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattagttcattacctagaaGttaatgtttgaaatttatag	6	3	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55945097	T	T	55945097	1	4	75	0	1	0	0	0	0	0	0	0	11605	1044	36	3		3	PCDH15	10	55945097	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1413698	55945097	79589650	718	82678											
PCDH15	65217	broad.mit.edu	37	chr10	56287656	56287656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctaaagagagaaaataacCaaaagtaataattgactgca	6	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56287656	A	A	56287656	1	1	75	0	1	0	0	0	0	0	0	0	11605	609	21	2		2	PCDH15	10	56287656	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	342559	56287656	79247091	719	82679											
EGR2	1959	broad.mit.edu	37	chr10	64574403	64574403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agactgtaagaagaggccagCccaactgtggcaacccattg	11	11	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64574403	T	T	64574403	1	4	75	0	1	0	0	0	0	0	0	0	5012	754	26	4		4	EGR2	10	64574403	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8286747	64574403	70960344	720	82680											
MYPN	84665	broad.mit.edu	37	chr10	69959219	69959219	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatgctggtcagggagaccgGagtccactctctgctcattg	13	11	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69959219	C	C	69959219	3	2	75	1	0	0	0	0	1	0	0	0	10192	1174	41	4	3442	4	MYPN	10	69959219	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5384816	69959219	65575528	721	82681											
DNA2	1763	broad.mit.edu	37	chr10	70210005	70210005	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttactattatcacttggcCtgaaaaaaaaaaaagcacaa	4	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70210005	A	A	70210005	5	1	75	1	0	0	0	0	0	0	1	0	4636	695	24	2	2527	2	DNA2	10	70210005	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	250786	70210005	65324742	722	82682											
SUPV3L1	6832	broad.mit.edu	37	chr10	70962336	70962336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatgtcaggtgattactgGttaacctcatgagcatgaat	10	6	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70962336	T	T	70962336	1	4	75	0	1	0	0	0	0	0	0	0	15520	1276	44	3		3	SUPV3L1	10	70962336	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	752331	70962336	64572411	723	82683											
KCNMA1	3778	broad.mit.edu	37	chr10	78870177	78870178	+	Intron	DNP	CG	TC	TC													atgcaataaacgcggaagctCggcactctcgaaggccactt							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	78870178	TC	TC	78870177	1	4	75	0	1	0	0	0	0	0	0	0	8143	899	31	4		4	KCNMA1	10	78870177	Intron	DNP	CG	TCGA-17-Z046-01A-01W-0746-08	7907841	78870177	56664570	724	82684											
POLR3A	11128	broad.mit.edu	37	chr10	79781775	79781775	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggtcttggctcctgagatCcgatgctaaaaccagcacag	11	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79781775	A	A	79781775	2	1	75	1	0	0	0	0	0	0	0	1	12323	842	30	3		3	POLR3A	10	79781775	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	911598	79781775	55752972	725	82685											
ANXA11	311	broad.mit.edu	37	chr10	81921635	81921635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatagctttgtttccccaCaatcccctgactgccctcat	4	18	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81921635	A	A	81921635	1	1	75	0	1	0	0	0	0	0	0	0	716	493	17	3		3	ANXA11	10	81921635	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2139860	81921635	53613112	726	82686											
NRG3	10718	broad.mit.edu	37	chr10	84733393	84733393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatactcaatgtattggaaaCaggacacaaattatgtctta	6	6	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84733393	A	A	84733393	1	1	75	0	1	0	0	0	0	0	0	0	10744	493	17	3		3	NRG3	10	84733393	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2811758	84733393	50801354	727	82687											
CDHR1	92211	broad.mit.edu	37	chr10	85960424	85960424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacacaggctctggagggaGtgtcacctacttcctgcagg	14	11	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85960424	T	T	85960424	3	4	75	1	0	0	0	0	1	0	0	0	3148	1029	36	3	528	3	CDHR1	10	85960424	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1227031	85960424	49574323	728	82688											
CDHR1	92211	broad.mit.edu	37	chr10	85972130	85972130	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaagagcgttcagaagaaGacgatggtgctagggacccc	15	8	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85972130	T	T	85972130	3	4	75	1	0	0	0	0	1	0	0	0	3148	933	33	3	1807	3	CDHR1	10	85972130	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	11706	85972130	49562617	729	82689											
GRID1	2894	broad.mit.edu	37	chr10	87676108	87676108	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcttggagaatattttcctCacaaaacatgccatccccct	4	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87676108	A	A	87676108	1	1	75	0	1	0	0	0	0	0	0	0	6837	841	29	3		3	GRID1	10	87676108	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1703978	87676108	47858639	730	82690											
OPN4	94233	broad.mit.edu	37	chr10	88425548	88425549	+	3'UTR	INS	-	C	C													ttcttctgagacacatccagINScccccccacgtctccctcat							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88425549	C	C	88425548	6	5	75	0	1	1	1	0	0	0	0	0	10976	986	34	0		0	OPN4	10	88425548	3'UTR	INS	-	TCGA-17-Z046-01A-01W-0746-08	749440	88425548	47109199	731	82691											
LIPN	643418	broad.mit.edu	37	chr10	90528676	90528676	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttctacttccaaattcCataatcaaggtaggctcctt	4	10	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90528676	T	T	90528676	2	4	75	1	0	0	0	0	0	0	0	1	8902	581	21	4		4	LIPN	10	90528676	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2103128	90528676	45006071	732	82692											
STAMBPL1	57559	broad.mit.edu	37	chr10	90698126	90698126	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaagacataataatctagGaaccacctgtctgagagaca	10	8	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90698126	T	T	90698126	1	4	75	0	1	0	0	0	0	0	0	0	15369	1189	41	3		3	STAMBPL1	10	90698126	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	169450	90698126	44836621	733	82693											
HTR7	3363	broad.mit.edu	37	chr10	92503222	92503222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattcctagcccagggccacTgtctcttcccagcacaggag	9	16	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92503222	A	A	92503222	1	1	75	0	1	0	0	0	0	0	0	0	7522	1595	55	5		5	HTR7	10	92503222	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1805096	92503222	43031525	734	82694											
HECTD2	143279	broad.mit.edu	37	chr10	93271858	93271858	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtggtgtctgatacaaagtGaggtactcagtaaatatctg	11	5	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93271858	C	C	93271858	1	2	75	0	1	0	0	0	0	0	0	0	7107	1305	45	4		4	HECTD2	10	93271858	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	768636	93271858	42262889	735	82695											
CPEB3	22849	broad.mit.edu	37	chr10	93999766	93999766	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctaccgcgttggtggtGcccgtggaccaggtgctgcc	14	14	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93999766	T	T	93999766	2	4	75	1	0	0	0	0	0	0	0	1	3834	1306	46	3		3	CPEB3	10	93999766	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	727908	93999766	41534981	736	82696											
IDE	3416	broad.mit.edu	37	chr10	94297170	94297170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttatccgtggtgggatcaCtgataagaagtactttgata	10	6	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94297170	A	A	94297170	3	1	75	1	0	0	0	0	1	0	0	0	7563	565	20	3	2919	3	IDE	10	94297170	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	297404	94297170	41237577	737	82697											
MYOF	26509	broad.mit.edu	37	chr10	95132788	95132788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaattcgtgcataggccaGtctcttctctccccggatca	10	13	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95132788	T	T	95132788	3	4	75	1	0	0	0	0	1	0	0	0	10183	1020	36	3	3953	3	MYOF	10	95132788	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	835618	95132788	40401959	738	82698											
PDE6C	5146	broad.mit.edu	37	chr10	95388934	95388934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatcctcactcccaatgcGttctttcttattctgctttg	4	12	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95388934	T	T	95388934	1	4	75	0	1	0	0	0	0	0	0	0	11741	1160	40	3		3	PDE6C	10	95388934	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	256146	95388934	40145813	739	82699											
TBC1D12	23232	broad.mit.edu	37	chr10	96269795	96269795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctgtatttataaaattGgacttgttagagccaagtga	8	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96269795	T	T	96269795	1	4	75	0	1	0	0	0	0	0	0	0	15720	1363	47	2		2	TBC1D12	10	96269795	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	880861	96269795	39264952	740	82700											
PDLIM1	9124	broad.mit.edu	37	chr10	96997737	96997737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtggtgtgactcgctccCgggcatgcttctcacagtag	13	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96997737	A	A	96997737	3	1	75	1	0	0	0	0	1	0	0	0	11773	652	23	1	58	1	PDLIM1	10	96997737	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	727942	96997737	38537010	741	82701											
CC2D2B	387707	broad.mit.edu	37	chr10	97779499	97779499	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataatacaccaatggctgTattttttgactattcaaagg	6	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97779499	C	C	97779499	3	2	75	1	0	0	0	0	1	0	0	0	2755	1638	57	5	724	5	CC2D2B	10	97779499	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	781762	97779499	37755248	742	82702											
HPSE2	60495	broad.mit.edu	37	chr10	100481592	100481592	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagttatttggctctagatTaaaagcagacatgtaagtca	8	5	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100481592	A	A	100481592	1	1	75	0	1	0	0	0	0	0	0	0	7412	1769	61	5		5	HPSE2	10	100481592	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2702093	100481592	35053155	743	82703											
CNNM1	26507	broad.mit.edu	37	chr10	101147648	101147648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctcagtcccctgacatGgaggccttcacagacgggga	11	14	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101147648	T	T	101147648	3	4	75	1	0	0	0	0	1	0	0	0	3644	1348	47	2	2442	2	CNNM1	10	101147648	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	666056	101147648	34387099	744	82704											
PDZD7	79955	broad.mit.edu	37	chr10	102783371	102783371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaggccagcccgctctgCaccacaggatgggagtggct	14	14	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102783371	T	T	102783371	1	4	75	0	1	0	0	0	0	0	0	0	11798	725	25	4		4	PDZD7	10	102783371	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1635723	102783371	32751376	745	82705											
KAZALD1	81621	broad.mit.edu	37	chr10	102823922	102823922	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatatattgtgttctgccaCaagcatgtccacaaaaattt	6	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102823922	A	A	102823922	1	1	75	0	1	0	0	0	0	0	0	0	8059	493	17	3		3	KAZALD1	10	102823922	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	40551	102823922	32710825	746	82706											
LBX1	10660	broad.mit.edu	37	chr10	102987397	102987397	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaggcccagctgctgcGcgatttggtcgcgatcggcg	17	11	0	1	rs137946176	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102987397	A	A	102987397	3	1	75	1	0	0	0	0	1	0	0	0	8725	1087	38	4	373	4	LBX1	10	102987397	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	163475	102987397	32547350	747	82707											
LDB1	8861	broad.mit.edu	37	chr10	103869341	103869341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactggggcagaaactggGtggtcggagactcactcgga	17	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103869341	T	T	103869341	1	4	75	0	1	0	0	0	0	0	0	0	8767	1276	44	3		3	LDB1	10	103869341	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	881944	103869341	31665406	748	82708											
PSD	5662	broad.mit.edu	37	chr10	104174492	104174492	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctagaatctcctgctatAcacactgccccgccagcccc	6	18	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104174492	G	G	104174492	1	3	75	0	1	0	0	0	0	0	0	0	12752	406	14	5		5	PSD	10	104174492	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	305151	104174492	31360255	749	82709											
INA	9118	broad.mit.edu	37	chr10	105037801	105037801	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatgagtccctggccgctaAgaacctgcagtccgcggaag	13	12	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105037801	G	G	105037801	3	3	75	1	0	0	0	0	1	0	0	0	7800	72	3	5	835	5	INA	10	105037801	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	863309	105037801	30496946	750	82710											
PDCD11	22984	broad.mit.edu	37	chr10	105199724	105199724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaactgtaaacataatGgcttgcgtagtggtgttcag	14	5	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105199724	T	T	105199724	1	4	75	0	1	0	0	0	0	0	0	0	11711	1363	47	2		2	PDCD11	10	105199724	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	161923	105199724	30335023	751	82711											
CCDC147	159686	broad.mit.edu	37	chr10	106124755	106124755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaatttaccccctagcgcCcaaatgaaacatcctcagtt	4	14	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106124755	A	A	106124755	1	1	75	0	1	0	0	0	0	0	0	0	2807	638	22	2		2	CCDC147	10	106124755	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	925031	106124755	29409992	752	82712											
CCDC147	159686	broad.mit.edu	37	chr10	106207385	106207385	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcccaaattgtgctggccAtgcagtgaaaggcattttcc	9	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106207385	G	G	106207385	1	3	75	0	1	0	0	0	0	0	0	0	2807	232	8	5		5	CCDC147	10	106207385	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	82630	106207385	29327362	753	82713											
CCDC147	159686	broad.mit.edu	37	chr10	106207634	106207634	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccacactctggggagcacaCctggacaagtccactgactc	10	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106207634	G	G	106207634	1	3	75	0	1	0	0	0	0	0	0	0	2807	522	18	4		4	CCDC147	10	106207634	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	249	106207634	29327113	754	82714											
SORCS3	22986	broad.mit.edu	37	chr10	106976621	106976621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagaggttgatgctgaagCaacaggaggaagcatcagat	13	6	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106976621	A	A	106976621	1	1	75	0	1	0	0	0	0	0	0	0	15046	725	25	3		3	SORCS3	10	106976621	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	768987	106976621	28558126	755	82715											
SORCS3	22986	broad.mit.edu	37	chr10	107006865	107006865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaattctagcagaagcctgGtgaaagagtagaccttttac	11	7	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107006865	T	T	107006865	1	4	75	0	1	0	0	0	0	0	0	0	15046	1276	44	3		3	SORCS3	10	107006865	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	30244	107006865	28527882	756	82716											
SORCS1	114815	broad.mit.edu	37	chr10	108339330	108339330	+	Intron	DEL	C	-	-													acacacaagcagaggtaagtCctggaaaaccatgtgggata							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108339330	-	-	108339330	6	5	75	0	1	1	0	1	0	0	0	0	15044	870	30	0		0	SORCS1	10	108339330	Intron	DEL	C	TCGA-17-Z046-01A-01W-0746-08	1332465	108339330	27195417	757	82717											
ADD3	120	broad.mit.edu	37	chr10	111860432	111860432	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgagctcagatgccagccaAggcgtgattaccactcctcc	9	14	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111860432	T	T	111860432	3	4	75	1	0	0	0	0	1	0	0	0	306	69	3	5	23	5	ADD3	10	111860432	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3521102	111860432	23674315	758	82718											
NRAP	4892	broad.mit.edu	37	chr10	115364796	115364796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaaaccacagtggggcTggcctgagagtgtgccttcc	13	10	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115364796	A	A	115364796	1	1	75	0	1	0	0	0	0	0	0	0	10733	1595	55	5		5	NRAP	10	115364796	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	3504364	115364796	20169951	759	82719											
C10orf118	55088	broad.mit.edu	37	chr10	115889611	115889611	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgctatttatttttataTcaatcatgaaataacaacta	2	5	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115889611	G	G	115889611	1	3	75	0	1	0	0	0	0	0	0	0	1598	1450	50	5		5	C10orf118	10	115889611	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	524815	115889611	19645136	760	82720											
ATRNL1	26033	broad.mit.edu	37	chr10	117024783	117024783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcacatttccaatttttagAgggtcacttatatcagtcat	6	8	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117024783	G	G	117024783	1	3	75	0	1	0	0	0	0	0	0	0	1211	319	11	5		5	ATRNL1	10	117024783	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1135172	117024783	18509964	761	82721											
C10orf96	374355	broad.mit.edu	37	chr10	118084663	118084663	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgctgggtgcttggagCagaaggaaatcccgaaggca	15	8	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118084663	G	G	118084663	1	3	75	0	1	0	0	0	0	0	0	0	1638	725	25	4		4	C10orf96	10	118084663	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1059880	118084663	17450084	762	82722											
C10orf96	374355	broad.mit.edu	37	chr10	118101667	118101667	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgatgaaagaaaatgtcaaGattgaaatatctgacttaga	8	3	2	7			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118101667	T	T	118101667	3	4	75	1	0	0	0	0	1	0	0	0	1638	933	33	3	416	3	C10orf96	10	118101667	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	17004	118101667	17433080	763	82723											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118187538	118187539	+	Missense_Mutation	DNP	GG	AT	AT													agcttagatgcttggaatttGgattgttgcattcttgttct							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	118187539	AT	AT	118187538	3	1	75	1	0	0	0	0	1	0	0	0	12247	1357	47	4	16	4	PNLIPRP3	10	118187538	Missense_Mutation	DNP	GG	TCGA-17-Z046-01A-01W-0746-08	85871	118187538	17347209	764	82724											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118231514	118231514	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacaggctaccatggtatCtttgatttttctttttactt	5	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118231514	A	A	118231514	1	1	75	0	1	0	0	0	0	0	0	0	12247	928	32	3		3	PNLIPRP3	10	118231514	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	43976	118231514	17303233	765	82725											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118364739	118364739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaccatagtttgaggtgCtagcatatagctggcttttc	9	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118364739	A	A	118364739	1	1	75	0	1	0	0	0	0	0	0	0	12245	812	28	3		3	PNLIPRP1	10	118364739	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	133225	118364739	17170008	766	82726											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122334623	122334623	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacctgctagagtaacacCtgctgtttctgtttggcagt	9	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122334623	T	T	122334623	1	4	75	0	1	0	0	0	0	0	0	0	12389	696	24	4		4	PPAPDC1A	10	122334623	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3969884	122334623	13200124	767	82727											
TACC2	10579	broad.mit.edu	37	chr10	123970767	123970767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaggacaagagtagttGggacaaccagcaggaaaacc	12	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123970767	T	T	123970767	3	4	75	1	0	0	0	0	1	0	0	0	15621	1357	47	2	6929	2	TACC2	10	123970767	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1636144	123970767	11563980	768	82728											
DMBT1	1755	broad.mit.edu	37	chr10	124340177	124340177	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagacacaatttgatcacctCagagctggcaatagtggaca	9	10	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124340177	T	T	124340177	1	4	75	0	1	0	0	0	0	0	0	0	4617	841	29	4		4	DMBT1	10	124340177	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	369410	124340177	11194570	769	82729											
DMBT1	1755	broad.mit.edu	37	chr10	124378869	124378869	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccaggtgagtccccagcatCcttcatcgggatgtcccttc	10	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124378869	G	G	124378869	1	3	75	0	1	0	0	0	0	0	0	0	4617	870	30	4		4	DMBT1	10	124378869	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	38692	124378869	11155878	770	82730											
CUZD1	50624	broad.mit.edu	37	chr10	124600570	124600570	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaccatcatcatcacgAtggttgtcagtgtcactacc	6	13	7	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124600570	G	G	124600570	1	3	75	0	1	0	0	0	0	0	0	0	4099	348	12	5		5	CUZD1	10	124600570	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	221701	124600570	10934177	771	82731											
ACADSB	36	broad.mit.edu	37	chr10	124813334	124813334	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgctgtaaaattttaaacGgttgtgtcttgttgggagta	11	4	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124813334	A	A	124813334	1	1	75	0	1	0	0	0	0	0	0	0	115	1131	39	4		4	ACADSB	10	124813334	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	212764	124813334	10721413	772	82732											
DOCK1	1793	broad.mit.edu	37	chr10	128823080	128823080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcattttatcacatggcGctgattatgaaatgctcatt	8	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128823080	T	T	128823080	1	4	75	0	1	0	0	0	0	0	0	0	4724	1102	38	3		3	DOCK1	10	128823080	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4009746	128823080	6711667	773	82733											
MKI67	4288	broad.mit.edu	37	chr10	129910519	129910519	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccactctttctccctcctCtcttaggaacctctgtctga	5	16	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129910519	T	T	129910519	3	4	75	1	0	0	0	0	1	0	0	0	9691	913	32	4	7951	4	MKI67	10	129910519	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1087439	129910519	5624228	774	82734											
TCERG1L	256536	broad.mit.edu	37	chr10	132891705	132891705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctggccgtgggtggcaGggcacccggtgggtgagcgg	22	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132891705	T	T	132891705	1	4	75	0	1	0	0	0	0	0	0	0	15808	1015	35	2		2	TCERG1L	10	132891705	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2981186	132891705	2643042	775	82735											
TCERG1L	256536	broad.mit.edu	37	chr10	133106464	133106465	+	Intron	DNP	GG	CT	CT													agacattgtcaatgttatttGggcaccaacctgggatgggc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	133106465	CT	CT	133106464	1	2	75	0	1	0	0	0	0	0	0	0	15808	1363	47	4		4	TCERG1L	10	133106464	Intron	DNP	GG	TCGA-17-Z046-01A-01W-0746-08	214759	133106464	2428283	776	82736											
KNDC1	85442	broad.mit.edu	37	chr10	134997351	134997351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccctcctccgagccttcCtgtctgaggtgttcccgtcc	10	18	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134997351	A	A	134997351	1	1	75	0	1	0	0	0	0	0	0	0	8497	696	24	2		2	KNDC1	10	134997351	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1890887	134997351	537396	777	82737											
KNDC1	85442	broad.mit.edu	37	chr10	135014889	135014889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggcgcccgtggtgggcgGgtgcaagagagaagggcgtc	23	8	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135014889	T	T	135014889	1	4	75	0	1	0	0	0	0	0	0	0	8497	1247	43	2		2	KNDC1	10	135014889	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	17538	135014889	519858	778	82738											
TUBGCP2	10844	broad.mit.edu	37	chr10	135116245	135116245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccctgcaccaccctgaCccaggaacagtgctcaccct	6	20	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135116245	A	A	135116245	1	1	75	0	1	0	0	0	0	0	0	0	16892	522	18	3		3	TUBGCP2	10	135116245	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	101356	135116245	418502	779	82739											
IFITM3	10410	broad.mit.edu	37	chr11	320759	320760	+	Frame_Shift_Ins	INS	-	G	G													tccttgagcatctcatagttINSggggggctggccactgttga							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	320760	G	G	320759	7	5	75	1	0	1	1	0	0	0	0	0	7598	1812	63	0	354	0	IFITM3	11	320759	Frame_Shift_Ins	INS	-	TCGA-17-Z046-01A-01W-0746-08		320759	134685757	780	82740											
MUC5B	727897	broad.mit.edu	37	chr11	1251244	1251244	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctccccagcacctgctcCggggggctatggcagtgcca	12	17	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1251244	A	A	1251244	2	1	75	1	0	0	0	0	0	0	0	1	10073	639	23	1		1	MUC5B	11	1251244	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	930485	1251244	133755272	781	82741											
OR51A7	119687	broad.mit.edu	37	chr11	4929316	4929316	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcttaaggccctaaatacCtgtgtctcccacatctgtgc	8	13	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4929316	T	T	4929316	2	4	75	1	0	0	0	0	0	0	0	1	11182	668	24	4		4	OR51A7	11	4929316	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3678072	4929316	130077200	782	82742											
OR52E2	119678	broad.mit.edu	37	chr11	5080628	5080628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcttagggatggtagctGttgagagacccacatcagtg	13	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5080628	T	T	5080628	3	4	75	1	0	0	0	0	1	0	0	0	11209	1377	48	3	750	3	OR52E2	11	5080628	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	151312	5080628	129925888	783	82743											
OR52E2	119678	broad.mit.edu	37	chr11	5080731	5080731	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtagaatagtgaagttccCtatgagtgcgatcatgtaca	10	6	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5080731	T	T	5080731	3	4	75	1	0	0	0	0	1	0	0	0	11209	681	24	4	853	4	OR52E2	11	5080731	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	103	5080731	129925785	784	82744											
OR51B2	79345	broad.mit.edu	37	chr11	5345286	5345286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgattcacccataggatgCccattacagtaggcatcgtg	10	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5345286	A	A	5345286	3	1	75	1	0	0	0	0	1	0	0	0	11183	739	26	3	700	3	OR51B2	11	5345286	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	264555	5345286	129661230	785	82745											
TRIM22	10346	broad.mit.edu	37	chr11	5730293	5730293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctacagtggacgtgatGctgaatccaggcagtgccac	11	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5730293	A	A	5730293	3	1	75	1	0	0	0	0	1	0	0	0	16620	1319	46	4	938	4	TRIM22	11	5730293	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	385007	5730293	129276223	786	82746											
DNHD1	144132	broad.mit.edu	37	chr11	6588722	6588722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaatgtgagatgttagagCtgctgcccccatttgttggc	12	8	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6588722	A	A	6588722	3	1	75	1	0	0	0	0	1	0	0	0	4708	796	28	3	12126	3	DNHD1	11	6588722	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	858429	6588722	128417794	787	82747											
TAF10	6881	broad.mit.edu	37	chr11	6633011	6633011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaccccgttagatatggCcccctccgggggcgccgcgc	13	16	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6633011	A	A	6633011	3	1	75	1	0	0	0	0	1	0	0	0	15633	739	26	3	401	3	TAF10	11	6633011	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	44289	6633011	128373505	788	82748											
OR2AG1	144125	broad.mit.edu	37	chr11	6807165	6807165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaataaggaggtcatgcgGgccttgaggagggtcctggg	19	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6807165	T	T	6807165	2	4	75	1	0	0	0	0	0	0	0	1	11078	1219	43	2		2	OR2AG1	11	6807165	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	174154	6807165	128199351	789	82749											
OR2D3	120775	broad.mit.edu	37	chr11	6942890	6942890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccatcttttcaatgggcGtggtaatcctcctggcccct	10	13	2	0	rs138058537		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6942890	T	T	6942890	3	4	75	1	0	0	0	0	1	0	0	0	11089	1145	40	3	660	3	OR2D3	11	6942890	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	135725	6942890	128063626	790	82750											
OR10A3	26496	broad.mit.edu	37	chr11	7960420	7960420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaactcgaatgtaagaCaagaggatcaacaagaaagg	10	6	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7960420	A	A	7960420	3	1	75	1	0	0	0	0	1	0	0	0	10985	477	17	3	299	3	OR10A3	11	7960420	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1017530	7960420	127046096	791	82751											
EIF3F	8665	broad.mit.edu	37	chr11	8008799	8008799	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatcaccagtaaccaatcAgcaaaaagctctagctcacg	6	12	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8008799	G	G	8008799	1	3	75	0	1	0	0	0	0	0	0	0	5058	203	7	5		5	EIF3F	11	8008799	5'Flank	SNP	A	TCGA-17-Z046-01A-01W-0746-08	48379	8008799	126997717	792	82752											
AMPD3	272	broad.mit.edu	37	chr11	10517225	10517225	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctggcctactggttcatcCagcacaaggtctactctccc	7	16	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10517225	T	T	10517225	4	4	75	1	0	0	0	0	0	1	0	0	587	595	21	4	1456	4	AMPD3	11	10517225	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2508426	10517225	124489291	793	82753											
INSC	387755	broad.mit.edu	37	chr11	15197263	15197263	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catggggtgttgataattatCgtggtgctgtttcctggttg	14	5	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15197263	T	T	15197263	1	4	75	0	1	0	0	0	0	0	0	0	7834	899	31	4		4	INSC	11	15197263	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4680038	15197263	119809253	794	82754											
INSC	387755	broad.mit.edu	37	chr11	15247160	15247160	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtgatatgaaaacacttGgcacggaagttattttcttt	8	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15247160	A	A	15247160	1	1	75	0	1	0	0	0	0	0	0	0	7834	1363	47	4		4	INSC	11	15247160	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	49897	15247160	119759356	795	82755											
USH1C	10083	broad.mit.edu	37	chr11	17565899	17565899	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcacgacccgttccttcGggtgcccggctgccaggagc	14	15	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17565899	T	T	17565899	1	4	75	0	1	0	0	0	0	0	0	0	17160	1131	39	1		1	USH1C	11	17565899	5'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2318739	17565899	117440617	796	82756											
TPH1	7166	broad.mit.edu	37	chr11	18042837	18042837	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgttagatatgtgtacaacCaatctgacctacttctctac	5	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18042837	G	G	18042837	1	3	75	0	1	0	0	0	0	0	0	0	16525	609	21	4		4	TPH1	11	18042837	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	476938	18042837	116963679	797	82757											
MRGPRX1	259249	broad.mit.edu	37	chr11	18956007	18956007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcagaaagctcaggcCtgcaaagtaggaaaacatca	10	10	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18956007	A	A	18956007	3	1	75	1	0	0	0	0	1	0	0	0	9860	681	24	2	647	2	MRGPRX1	11	18956007	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	913170	18956007	116050509	798	82758											
SLC6A5	9152	broad.mit.edu	37	chr11	20658776	20658776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagtttcccaagtacctacGcacacacaagccagtgttta	7	13	0	0	rs138885115		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20658776	T	T	20658776	3	4	75	1	0	0	0	0	1	0	0	0	14801	1087	38	3	1842	3	SLC6A5	11	20658776	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1702769	20658776	114347740	799	82759											
NELL1	4745	broad.mit.edu	37	chr11	20869316	20869316	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggtatttctttgtctttGagtgttgctgattctgccct	9	8	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20869316	T	T	20869316	1	4	75	0	1	0	0	0	0	0	0	0	10428	1305	45	3		3	NELL1	11	20869316	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	210540	20869316	114137200	800	82760											
GAS2	2620	broad.mit.edu	37	chr11	22707433	22707433	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttattgtgaacggatGcatcaaggtctatactaaca	7	6	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22707433	C	C	22707433	1	2	75	0	1	0	0	0	0	0	0	0	6307	1334	46	4		4	GAS2	11	22707433	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1838117	22707433	112299083	801	82761											
MUC15	143662	broad.mit.edu	37	chr11	26587269	26587269	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcactttccaaagaaataGgtttattttccattgtttta	4	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26587269	T	T	26587269	3	4	75	1	0	0	0	0	1	0	0	0	10066	1000	35	2	879	2	MUC15	11	26587269	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3879836	26587269	108419247	802	82762											
FIBIN	387758	broad.mit.edu	37	chr11	27016640	27016640	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggacaaatacgagctGctggccctcaccattaggag	11	12	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016640	T	T	27016640	2	4	75	1	0	0	0	0	0	0	0	1	5942	1306	46	3		3	FIBIN	11	27016640	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	429371	27016640	107989876	803	82763											
MPPED2	744	broad.mit.edu	37	chr11	30432920	30432920	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatttacaaaaagaactcaCagggtttgtaaataagtaag	7	5	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30432920	A	A	30432920	1	1	75	0	1	0	0	0	0	0	0	0	9836	493	17	3		3	MPPED2	11	30432920	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3416280	30432920	104573596	804	82764											
MPPED2	744	broad.mit.edu	37	chr11	30435664	30435664	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagacttcatcttataaaaGggtcccgctgctaaaaagtt	7	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30435664	A	A	30435664	1	1	75	0	1	0	0	0	0	0	0	0	9836	1015	35	4		4	MPPED2	11	30435664	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2744	30435664	104570852	805	82765											
ELP4	26610	broad.mit.edu	37	chr11	31669355	31669355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtctggaatcatttattGgttctgagagagaaactaac	10	5	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31669355	T	T	31669355	3	4	75	1	0	0	0	0	1	0	0	0	5124	1348	47	2	1024	2	ELP4	11	31669355	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1233691	31669355	103337161	806	82766											
CCDC73	493860	broad.mit.edu	37	chr11	32636280	32636280	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttggtgatttaaattctgtAcatccattgtctttttccaa	5	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32636280	T	T	32636280	4	4	75	1	0	0	0	0	0	1	0	0	2874	389	14	5	1667	5	CCDC73	11	32636280	Nonsense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	966925	32636280	102370236	807	82767											
C11orf41	25758	broad.mit.edu	37	chr11	33566468	33566468	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggaccagctaagagcagtTcgatgactactcttgctaaa	9	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33566468	A	A	33566468	3	1	75	1	0	0	0	0	1	0	0	0	1652	1783	62	5	2062	5	C11orf41	11	33566468	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	930188	33566468	101440048	808	82768											
C11orf41	25758	broad.mit.edu	37	chr11	33566572	33566572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattcacaccaacctacatGtatgcaagaacaggacatac	5	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33566572	T	T	33566572	3	4	75	1	0	0	0	0	1	0	0	0	1652	1377	48	3	2166	3	C11orf41	11	33566572	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	104	33566572	101439944	809	82769											
LMO2	4005	broad.mit.edu	37	chr11	33886287	33886287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggccttcaggaagtagcGgtccccaatgttctgctggc	13	11	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33886287	T	T	33886287	3	4	75	1	0	0	0	0	1	0	0	0	8926	1116	39	1	366	1	LMO2	11	33886287	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	319715	33886287	101120229	810	82770											
NAT10	55226	broad.mit.edu	37	chr11	34140113	34140113	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catagcatacggagcgtaacAgaagccaaggtacgttgact	11	9	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34140113	G	G	34140113	1	3	75	0	1	0	0	0	0	0	0	0	10268	203	7	5		5	NAT10	11	34140113	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	253826	34140113	100866403	811	82771											
SLC1A2	6506	broad.mit.edu	37	chr11	35302387	35302387	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagtactcacagtcccAgcagaaccccatccacagac	8	16	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35302387	C	C	35302387	1	2	75	0	1	0	0	0	0	0	0	0	14545	203	7	5		5	SLC1A2	11	35302387	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1162274	35302387	99704129	812	82772											
HSD17B12	51144	broad.mit.edu	37	chr11	43837096	43837096	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaacaaaaataatgcatgcAggtattggtataatgattca	8	4	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43837096	T	T	43837096	1	4	75	0	1	0	0	0	0	0	0	0	7448	203	7	5		5	HSD17B12	11	43837096	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	8534709	43837096	91169420	813	82773											
ALX4	60529	broad.mit.edu	37	chr11	44286499	44286499	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccggctcgccgttgagctCgtagccattgaggcctgggc	15	13	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44286499	T	T	44286499	3	4	75	1	0	0	0	0	1	0	0	0	558	893	31	4	98	4	ALX4	11	44286499	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	449403	44286499	90720017	814	82774											
OR4B1	119765	broad.mit.edu	37	chr11	48239130	48239130	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctgctatcttcctctacAtgcgaccttcttccactttc	4	16	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48239130	T	T	48239130	3	4	75	1	0	0	0	0	1	0	0	0	11138	217	8	5	771	5	OR4B1	11	48239130	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3952631	48239130	86767386	815	82775											
FOLH1	2346	broad.mit.edu	37	chr11	49197410	49197410	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattaaaatagtctcttaaCtgtgtagaaaagtttccagt	6	5	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49197410	G	G	49197410	5	3	75	1	0	0	0	0	0	0	1	0	6037	579	20	4	1280	4	FOLH1	11	49197410	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	958280	49197410	85809106	816	82776											
OR5D13	390142	broad.mit.edu	37	chr11	55541757	55541757	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcttctgtgttttacacaGtggcgattccaatgctgaac	10	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55541757	C	C	55541757	3	2	75	1	0	0	0	0	1	0	0	0	11248	1029	36	4	846	4	OR5D13	11	55541757	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6344347	55541757	79464759	817	82777											
OR5D14	219436	broad.mit.edu	37	chr11	55563767	55563767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctccacctgggcctccCacctgacttctatcaccatc	4	20	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563767	A	A	55563767	3	1	75	1	0	0	0	0	1	0	0	0	11249	594	21	2	738	2	OR5D14	11	55563767	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	22010	55563767	79442749	818	82778											
SPRYD5	84767	broad.mit.edu	37	chr11	55652955	55652955	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggcactcacctgtcccatCtgcatgaactacttcctaga	7	14	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55652955	T	T	55652955	2	4	75	1	0	0	0	0	0	0	0	1	15229	903	32	4		4	SPRYD5	11	55652955	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	89188	55652955	79353561	819	82779											
OR8H2	390151	broad.mit.edu	37	chr11	55873446	55873446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtcatgcagagaagacagGactccaggtaattaatatag	11	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55873446	T	T	55873446	3	4	75	1	0	0	0	0	1	0	0	0	11332	1174	41	3	930	3	OR8H2	11	55873446	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	220491	55873446	79133070	820	82780											
OR5J2	282775	broad.mit.edu	37	chr11	55944951	55944951	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagggattcccatgttaaaCctgttgatacacagtttgag	9	8	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55944951	T	T	55944951	2	4	75	1	0	0	0	0	0	0	0	1	11259	506	18	4		4	OR5J2	11	55944951	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	71505	55944951	79061565	821	82781											
SSRP1	6749	broad.mit.edu	37	chr11	57099550	57099550	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaggaggccgcattcccatCtcaggaagggtttaccaagg	12	11	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57099550	A	A	57099550	1	1	75	0	1	0	0	0	0	0	0	0	15312	928	32	3		3	SSRP1	11	57099550	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1154599	57099550	77906966	822	82782											
P2RX3	5024	broad.mit.edu	37	chr11	57114061	57114061	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaccaggtacgggacacaGccattgagtcctcggtggta	12	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57114061	A	A	57114061	3	1	75	1	0	0	0	0	1	0	0	0	11435	971	34	4	169	4	P2RX3	11	57114061	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	14511	57114061	77892455	823	82783											
GIF	2694	broad.mit.edu	37	chr11	59610454	59610454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtttaaaattcttagGtaaaaccatatgcctgactc	7	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59610454	T	T	59610454	1	4	75	0	1	0	0	0	0	0	0	0	6440	1276	44	3		3	GIF	11	59610454	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2496393	59610454	75396062	824	82784											
MS4A2	2206	broad.mit.edu	37	chr11	59860173	59860173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaactttatcgagtacccCaaatgttacctatgtttgga	7	8	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59860173	A	A	59860173	1	1	75	0	1	0	0	0	0	0	0	0	9954	609	21	2		2	MS4A2	11	59860173	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	249719	59860173	75146343	825	82785											
MS4A1	931	broad.mit.edu	37	chr11	60229821	60229821	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcattttgttatttgtTttatttttaggagttttgag	7	4	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60229821	A	A	60229821	1	1	75	0	1	0	0	0	0	0	0	0	9948	1856	64	5		5	MS4A1	11	60229821	5'UTR	SNP	T	TCGA-17-Z046-01A-01W-0746-08	369648	60229821	74776695	826	82786											
PGA5	5222	broad.mit.edu	37	chr11	61018486	61018486	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccctggacactgagccagGaagctcctccttgcacgtgc	10	15	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61018486	T	T	61018486	1	4	75	0	1	0	0	0	0	0	0	0	11867	1189	41	3		3	PGA5	11	61018486	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	788665	61018486	73988030	827	82787											
DAGLA	747	broad.mit.edu	37	chr11	61490787	61490787	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaggggctttggagcctgGcttttgtccccagaagcatt	12	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61490787	C	C	61490787	1	2	75	0	1	0	0	0	0	0	0	0	4259	1218	42	4		4	DAGLA	11	61490787	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	472301	61490787	73515729	828	82788											
ASRGL1	80150	broad.mit.edu	37	chr11	62124060	62124060	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaaaaatatatacaaaacaGatgcaatgtatttgagtttc	5	5	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62124060	A	A	62124060	1	1	75	0	1	0	0	0	0	0	0	0	1064	957	33	4		4	ASRGL1	11	62124060	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	633273	62124060	72882456	829	82789											
MARK2	2011	broad.mit.edu	37	chr11	63667318	63667318	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttagtctggtccacttggttCcctgatgttttccatcttac	7	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63667318	T	T	63667318	1	4	75	0	1	0	0	0	0	0	0	0	9405	870	30	4		4	MARK2	11	63667318	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1543258	63667318	71339198	830	82790											
NRXN2	9379	broad.mit.edu	37	chr11	64458034	64458034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgaagggccctctccaGggtggaggtgctgcttgcac	17	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64458034	T	T	64458034	1	4	75	0	1	0	0	0	0	0	0	0	10761	1015	35	2		2	NRXN2	11	64458034	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	790716	64458034	70548482	831	82791											
NRXN2	9379	broad.mit.edu	37	chr11	64460139	64460139	+	Intron	DEL	C	-	-													agggcaagcccccacccccaCcccagcaccccccaaataaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64460139	-	-	64460139	6	5	75	0	1	1	0	1	0	0	0	0	10761	522	18	0		0	NRXN2	11	64460139	Intron	DEL	C	TCGA-17-Z046-01A-01W-0746-08	2105	64460139	70546377	832	82792											
PYGM	5837	broad.mit.edu	37	chr11	64522366	64522366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcatggcctaaagctgcGgtgggtgtggccaggaggga	21	7	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64522366	T	T	64522366	1	4	75	0	1	0	0	0	0	0	0	0	12970	1131	39	1		1	PYGM	11	64522366	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	62227	64522366	70484150	833	82793											
DRAP1	10589	broad.mit.edu	37	chr11	65688800	65688801	+	Splice_Site	INS	-	C	C													tcctgccttctgccctgcagINSccccccgacacccttcctgc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65688801	C	C	65688800	8	5	75	1	0	1	1	0	0	0	1	0	4795	985	34	0	538	0	DRAP1	11	65688800	Splice_Site	INS	-	TCGA-17-Z046-01A-01W-0746-08	1166434	65688800	69317716	834	82794											
ANO1	55107	broad.mit.edu	37	chr11	70026039	70026039	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaagggtggtacccgctcaGactgctgcctggtagctgga	15	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70026039	T	T	70026039	1	4	75	0	1	0	0	0	0	0	0	0	695	957	33	3		3	ANO1	11	70026039	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4337239	70026039	64980477	835	82795											
CLPB	81570	broad.mit.edu	37	chr11	72013472	72013472	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagggaggagagcacctcaaCtatccccaaggctttcacac	9	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72013472	G	G	72013472	1	3	75	0	1	0	0	0	0	0	0	0	3583	580	20	4		4	CLPB	11	72013472	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1987433	72013472	62993044	836	82796											
PAAF1	80227	broad.mit.edu	37	chr11	73611202	73611202	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccttagttttaaaacccaGcatgtgggtttagcatgtag	9	7	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73611202	A	A	73611202	1	1	75	0	1	0	0	0	0	0	0	0	11456	986	34	4		4	PAAF1	11	73611202	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1597730	73611202	61395314	837	82797											
ODZ4	26011	broad.mit.edu	37	chr11	78437095	78437095	+	Intron	SNP	G	A	A													acaaggttccaccccagcctGgttcaagtaattctattaat							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78437095	A	A	78437095	1	1	75	0	1	0	0	0	0	0	0	0	10932	1363	47	4		4	ODZ4	11	78437095	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4825893	78437095	56569421	838	82798	378	2									
ODZ4	26011	broad.mit.edu	37	chr11	78437102	78437102	+	Intron	SNP	G	A	A													tccaccccagcctggttcaaGtaattctattaatccactta							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78437102	A	A	78437102	1	1	75	0	1	0	0	0	0	0	0	0	10932	1044	36	4		4	ODZ4	11	78437102	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7	78437102	56569414	839	82799	378	2									
FAT3	120114	broad.mit.edu	37	chr11	92085726	92085726	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtgaatatacaggttttaGatatgaatgatctgagacct	9	4	1	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92085726	C	C	92085726	3	2	75	1	0	0	0	0	1	0	0	0	5748	942	33	4	450	4	FAT3	11	92085726	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	13648624	92085726	42920790	840	82800											
PGR	5241	broad.mit.edu	37	chr11	100996909	100996909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaaatgcaaaacaaagTactccatttatttttaagtg	5	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100996909	A	A	100996909	1	1	75	0	1	0	0	0	0	0	0	0	11900	1653	57	5		5	PGR	11	100996909	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	8911183	100996909	34009607	841	82801											
CASP1	834	broad.mit.edu	37	chr11	104905349	104905349	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcttactgtattgctgTcctacttgtttccctcaata	4	12	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104905349	A	A	104905349	1	1	75	0	1	0	0	0	0	0	0	0	2694	1682	58	5		5	CASP1	11	104905349	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	3908440	104905349	30101167	842	82802											
GRIA4	2893	broad.mit.edu	37	chr11	105775854	105775854	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaagtagttataagcccAgcagatgaagttaaaattcc	7	6	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105775854	C	C	105775854	1	2	75	0	1	0	0	0	0	0	0	0	6836	203	7	5		5	GRIA4	11	105775854	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	870505	105775854	29230662	843	82803											
ACAT1	38	broad.mit.edu	37	chr11	108014679	108014679	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaaaaaaaaaagatttTaacaaccccccccccccttt	2	14	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108014679	C	C	108014679	1	2	75	0	1	0	0	0	0	0	0	0	121	1769	61	5		5	ACAT1	11	108014679	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2238825	108014679	26991837	844	82804											
TTC12	54970	broad.mit.edu	37	chr11	113236979	113236979	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgagaaagcttcatggccTagaaattctcaactctacga	7	10	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113236979	C	C	113236979	3	2	75	1	0	0	0	0	1	0	0	0	16805	1522	53	5	2157	5	TTC12	11	113236979	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	5222300	113236979	21769537	845	82805											
DRD2	1813	broad.mit.edu	37	chr11	113286152	113286152	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttgagacctttagtggAgccctcaggtgggccctgaa	13	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113286152	G	G	113286152	2	3	75	1	0	0	0	0	0	0	0	1	4797	291	11	5		5	DRD2	11	113286152	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	49173	113286152	21720364	846	82806											
ZNF259	8882	broad.mit.edu	37	chr11	116656339	116656339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacaaaactgttccctgagGgatcatcaatgatctaacaa	6	11	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116656339	A	A	116656339	3	1	75	1	0	0	0	0	1	0	0	0	17927	1232	43	4	819	4	ZNF259	11	116656339	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3370187	116656339	18350177	847	82807											
APOC3	345	broad.mit.edu	37	chr11	116703604	116703604	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgtggctgcctgagacCtcaataccccaagtccacct	8	17	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116703604	A	A	116703604	1	1	75	0	1	0	0	0	0	0	0	0	801	696	24	2		2	APOC3	11	116703604	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	47265	116703604	18302912	848	82808											
CEP164	22897	broad.mit.edu	37	chr11	117242094	117242094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggacacagtagatgcagGagaggagggttccaggaggg	19	5	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117242094	T	T	117242094	3	4	75	1	0	0	0	0	1	0	0	0	3279	1174	41	3	1090	3	CEP164	11	117242094	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	538490	117242094	17764422	849	82809											
TMPRSS13	84000	broad.mit.edu	37	chr11	117789104	117789104	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcccatctctcgtggcttCcctacagcatcccccttacc	4	20	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117789104	T	T	117789104	1	4	75	0	1	0	0	0	0	0	0	0	16368	870	30	4		4	TMPRSS13	11	117789104	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	547010	117789104	17217412	850	82810											
SCN4B	6330	broad.mit.edu	37	chr11	118012062	118012062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcttccactgtgtggccCgagtagggaggaaagggaag	15	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118012062	A	A	118012062	1	1	75	0	1	0	0	0	0	0	0	0	14034	667	23	1		1	SCN4B	11	118012062	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	222958	118012062	16994454	851	82811											
AMICA1	120425	broad.mit.edu	37	chr11	118081130	118081130	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctggcatttactcaagatAatcagtttccttgcctcttg	8	10	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118081130	T	T	118081130	1	4	75	0	1	0	0	0	0	0	0	0	574	377	13	5		5	AMICA1	11	118081130	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	69068	118081130	16925386	852	82812											
ARHGEF12	23365	broad.mit.edu	37	chr11	120298716	120298716	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaagtagtaaaatggtatAaaaagtttcttgacaatgtt	7	2	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120298716	G	G	120298716	1	3	75	0	1	0	0	0	0	0	0	0	899	377	13	5		5	ARHGEF12	11	120298716	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2217586	120298716	14707800	853	82813											
OR6T1	219874	broad.mit.edu	37	chr11	123814197	123814197	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaacgatccagagacatgaCggccaagaggaagaagtcag	13	8	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123814197	G	G	123814197	3	3	75	1	0	0	0	0	1	0	0	0	11304	536	19	4	625	4	OR6T1	11	123814197	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3515481	123814197	11192319	854	82814											
HEPACAM	220296	broad.mit.edu	37	chr11	124794879	124794879	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcgctgctggtactgcTgtactgcacagaaagcagag	12	11	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124794879	A	A	124794879	3	1	75	1	0	0	0	0	1	0	0	0	7119	1580	55	5	1102	5	HEPACAM	11	124794879	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	980682	124794879	10211637	855	82815											
FEZ1	9638	broad.mit.edu	37	chr11	125351577	125351577	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacatctgtggcctggccCcgcctggaggaaggaagagc	14	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125351577	T	T	125351577	1	4	75	0	1	0	0	0	0	0	0	0	5880	638	22	4		4	FEZ1	11	125351577	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	556698	125351577	9654939	856	82816											
SPATA19	219938	broad.mit.edu	37	chr11	133711809	133711809	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggccctgagtgcaggccCttccccagtagggaaaagct	12	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133711809	T	T	133711809	1	4	75	0	1	0	0	0	0	0	0	0	15120	696	24	4		4	SPATA19	11	133711809	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8360232	133711809	1294707	857	82817											
IQSEC3	440073	broad.mit.edu	37	chr12	271198	271198	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccacgtcacgtacgtcacCaaggtggagaagtccattgt	11	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	271198	A	A	271198	2	1	75	1	0	0	0	0	0	0	0	1	7889	581	21	2		2	IQSEC3	12	271198	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08		271198	133580697	858	82818											
CACNA1C	775	broad.mit.edu	37	chr12	2566651	2566651	+	Intron	DEL	G	-	-													cctgcgcaatctgcttttccGggctgtatccagaggtcaga							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2566651	-	-	2566651	6	5	75	0	1	1	0	1	0	0	0	0	2566	1131	39	0		0	CACNA1C	12	2566651	Intron	DEL	G	TCGA-17-Z046-01A-01W-0746-08	2295453	2566651	131285244	859	82819											
CACNA1C	775	broad.mit.edu	37	chr12	2602666	2602666	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtcacatacgcatcttgaTggaatggttgatgaagagcg	14	6	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2602666	C	C	2602666	1	2	75	0	1	0	0	0	0	0	0	0	2566	1479	51	5		5	CACNA1C	12	2602666	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	36015	2602666	131249229	860	82820											
CACNA1C	775	broad.mit.edu	37	chr12	2763121	2763121	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgctctgtctctccccagtTcccagcaccacattccctaa	4	20	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2763121	C	C	2763121	1	2	75	0	1	0	0	0	0	0	0	0	2566	1798	62	5		5	CACNA1C	12	2763121	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	160455	2763121	131088774	861	82821											
C12orf4	57102	broad.mit.edu	37	chr12	4609339	4609339	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccagcaagagaggaatgcTtattgttgtgatgtcatggg	13	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4609339	A	A	4609339	3	1	75	1	0	0	0	0	1	0	0	0	1698	1609	56	5	269	5	C12orf4	12	4609339	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1846218	4609339	129242556	862	82822											
GALNT8	26290	broad.mit.edu	37	chr12	4872286	4872286	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtttcaatcttgtctatccAttaagttgggttgcagtccg	10	8	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4872286	G	G	4872286	1	3	75	0	1	0	0	0	0	0	0	0	6281	232	8	5		5	GALNT8	12	4872286	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	262947	4872286	128979609	863	82823											
NTF3	4908	broad.mit.edu	37	chr12	5603537	5603537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagctctccaagcagatgGtggacgttaaggaaaattac	10	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5603537	T	T	5603537	3	4	75	1	0	0	0	0	1	0	0	0	10791	1261	44	3	202	3	NTF3	12	5603537	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	731251	5603537	128248358	864	82824											
VWF	7450	broad.mit.edu	37	chr12	6232408	6232408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcattgctgcccaggtaGgcggctgctggtgtggcgac	17	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6232408	T	T	6232408	1	4	75	0	1	0	0	0	0	0	0	0	17373	1015	35	2		2	VWF	12	6232408	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	628871	6232408	127619487	865	82825											
NOP2	4839	broad.mit.edu	37	chr12	6675721	6675721	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagctttccaggcaatggtTtggcctcaggagacttattt	11	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6675721	A	A	6675721	3	1	75	1	0	0	0	0	1	0	0	0	10633	1841	64	5	2266	5	NOP2	12	6675721	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	443313	6675721	127176174	866	82826											
ACSM4	341392	broad.mit.edu	37	chr12	7474930	7474930	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctctcctagctgctatgCttactgcttgaatgtcctaa	7	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7474930	A	A	7474930	1	1	75	0	1	0	0	0	0	0	0	0	186	812	28	3		3	ACSM4	12	7474930	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	799209	7474930	126376965	867	82827											
CD163L1	283316	broad.mit.edu	37	chr12	7549080	7549080	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttatatgtcaacttggctgGactatgatacccagttattt	7	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7549080	T	T	7549080	1	4	75	0	1	0	0	0	0	0	0	0	2998	1189	41	3		3	CD163L1	12	7549080	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	74150	7549080	126302815	868	82828											
CD163	9332	broad.mit.edu	37	chr12	7649613	7649613	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgcatgccacagcagcatCgtaactgtcccagccgtcat	8	15	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7649613	T	T	7649613	3	4	75	1	0	0	0	0	1	0	0	0	2997	884	31	4	2623	4	CD163	12	7649613	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	100533	7649613	126202282	869	82829											
MFAP5	8076	broad.mit.edu	37	chr12	8804427	8804427	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataactcttagcaacttctAaaagaaaacccttattgagc	4	9	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8804427	G	G	8804427	1	3	75	0	1	0	0	0	0	0	0	0	9611	377	13	5		5	MFAP5	12	8804427	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1154814	8804427	125047468	870	82830											
A2ML1	144568	broad.mit.edu	37	chr12	9001437	9001437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgacccaatgccccaagGgcattcgagccagcgttcca	9	15	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9001437	T	T	9001437	3	4	75	1	0	0	0	0	1	0	0	0	5	1232	43	2	2017	2	A2ML1	12	9001437	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	197010	9001437	124850458	871	82831											
A2ML1	144568	broad.mit.edu	37	chr12	9027056	9027056	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagacttacaccttcaccatCagccaaagtgtgctggtcac	7	14	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9027056	T	T	9027056	2	4	75	1	0	0	0	0	0	0	0	1	5	816	29	4		4	A2ML1	12	9027056	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	25619	9027056	124824839	872	82832											
PZP	5858	broad.mit.edu	37	chr12	9312481	9312481	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggactaagacaggtaatctAtgtgcacgttctgaactcat	9	8	3	2	rs143303368	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9312481	G	G	9312481	1	3	75	0	1	0	0	0	0	0	0	0	12977	464	16	5		5	PZP	12	9312481	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	285425	9312481	124539414	873	82833											
PZP	5858	broad.mit.edu	37	chr12	9318489	9318489	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgagacaattgtattaatGagcctatgcaattgcgcatt	8	7	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9318489	T	T	9318489	1	4	75	0	1	0	0	0	0	0	0	0	12977	1305	45	3		3	PZP	12	9318489	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6008	9318489	124533406	874	82834											
PZP	5858	broad.mit.edu	37	chr12	9318630	9318630	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcccctccagcaaatggagGaaagtaaagttacttacttc	7	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9318630	A	A	9318630	1	1	75	0	1	0	0	0	0	0	0	0	12977	1189	41	4		4	PZP	12	9318630	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	141	9318630	124533265	875	82835											
GRIN2B	2904	broad.mit.edu	37	chr12	13716876	13716876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatctcgtcaaactccctgCgggacttggccgaggcaggc	13	14	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13716876	A	A	13716876	3	1	75	1	0	0	0	0	1	0	0	0	6846	768	27	3	1162	3	GRIN2B	12	13716876	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4398246	13716876	120135019	876	82836											
GRIN2B	2904	broad.mit.edu	37	chr12	13720017	13720017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agacacccataaagcaatgtCggaactgccaatagaaaagg	9	9	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13720017	A	A	13720017	3	1	75	1	0	0	0	0	1	0	0	0	6846	884	31	3	1922	3	GRIN2B	12	13720017	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3141	13720017	120131878	877	82837											
WBP11	51729	broad.mit.edu	37	chr12	14943725	14943725	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatggagttgattcattTtcttacagtttggagaacag	10	4	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14943725	G	G	14943725	1	3	75	0	1	0	0	0	0	0	0	0	17385	1856	64	5		5	WBP11	12	14943725	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1223708	14943725	118908170	878	82838											
PIK3C2G	5288	broad.mit.edu	37	chr12	18544317	18544317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcatttcctgatgtcatGcttcttggatggttaattaa	8	6	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18544317	T	T	18544317	1	4	75	0	1	0	0	0	0	0	0	0	12006	1334	46	3		3	PIK3C2G	12	18544317	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3600592	18544317	115307578	879	82839											
PDE3A	5139	broad.mit.edu	37	chr12	20523017	20523017	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcagtccgcggaggcggctCcaagggagcatttggggtcc	17	12	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20523017	T	T	20523017	3	4	75	1	0	0	0	0	1	0	0	0	11731	855	30	4	801	4	PDE3A	12	20523017	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1978700	20523017	113328878	880	82840											
ABCC9	10060	broad.mit.edu	37	chr12	21995517	21995517	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagttaactaccaaagtaGtgtataagcatgttcatcct	6	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21995517	A	A	21995517	1	1	75	0	1	0	0	0	0	0	0	0	59	1044	36	4		4	ABCC9	12	21995517	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1472500	21995517	111856378	881	82841											
IFLTD1	160492	broad.mit.edu	37	chr12	25679917	25679917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaaacacaaagattgtaaGctgccttcagataggagtgt	9	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25679917	A	A	25679917	1	1	75	0	1	0	0	0	0	0	0	0	7600	986	34	4		4	IFLTD1	12	25679917	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3684400	25679917	108171978	882	82842											
H3F3C	440093	broad.mit.edu	37	chr12	31945049	31945049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgtggccagctgtttgcGgggggctttcccaccggtgg	16	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31945049	T	T	31945049	3	4	75	1	0	0	0	0	1	0	0	0	7001	1116	39	1	359	1	H3F3C	12	31945049	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6265132	31945049	101906846	883	82843											
ALG10B	144245	broad.mit.edu	37	chr12	38710527	38710527	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactccaggaaacagcgaccCgctgttttccggatccgcgc	10	16	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38710527	G	G	38710527	1	3	75	0	1	0	0	0	0	0	0	0	512	667	23	4		4	ALG10B	12	38710527	5'Flank	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6765478	38710527	95141368	884	82844											
SLC2A13	114134	broad.mit.edu	37	chr12	40223820	40223820	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagtttaaaagaactgctAtaagtgcaagcactctgaaa	8	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40223820	G	G	40223820	1	3	75	0	1	0	0	0	0	0	0	0	14656	464	16	5		5	SLC2A13	12	40223820	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1513293	40223820	93628075	885	82845											
PPHLN1	51535	broad.mit.edu	37	chr12	42681378	42681378	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaagaacatcactaagcaGagccggtcccgggtagacat	10	10	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42681378	T	T	42681378	1	4	75	0	1	0	0	0	0	0	0	0	12411	957	33	3		3	PPHLN1	12	42681378	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2457558	42681378	91170517	886	82846											
ADAMTS20	80070	broad.mit.edu	37	chr12	43771453	43771453	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttaatatatattatgctGtgtcatttccacaacaatcc	4	9	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43771453	A	A	43771453	1	1	75	0	1	0	0	0	0	0	0	0	266	1392	48	4		4	ADAMTS20	12	43771453	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1090075	43771453	90080442	887	82847											
ADAMTS20	80070	broad.mit.edu	37	chr12	43837747	43837747	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggcccagaggttattaCtgctgaatggatgaaaaatt	11	5	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43837747	T	T	43837747	1	4	75	0	1	0	0	0	0	0	0	0	266	580	20	4		4	ADAMTS20	12	43837747	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	66294	43837747	90014148	888	82848											
ADAMTS20	80070	broad.mit.edu	37	chr12	43856834	43856834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaggcaggcaagccagtGtaaagataacaccacaacac	8	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43856834	T	T	43856834	1	4	75	0	1	0	0	0	0	0	0	0	266	1392	48	3		3	ADAMTS20	12	43856834	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	19087	43856834	89995061	889	82849											
ADAMTS20	80070	broad.mit.edu	37	chr12	43896104	43896104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcatctttcaatggtaCattttttgatgtgtgtccta	6	7	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43896104	A	A	43896104	3	1	75	1	0	0	0	0	1	0	0	0	266	478	17	3	5157	3	ADAMTS20	12	43896104	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	39270	43896104	89955791	890	82850											
IRAK4	51135	broad.mit.edu	37	chr12	44176250	44176250	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatggcaccagaagctttgcGtggagaaataacacccaaat	9	9	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44176250	A	A	44176250	3	1	75	1	0	0	0	0	1	0	0	0	7895	1145	40	4	1112	4	IRAK4	12	44176250	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	280146	44176250	89675645	891	82851											
C12orf68	387856	broad.mit.edu	37	chr12	48578089	48578090	+	Frame_Shift_Ins	INS	-	G	G													tgaggacgtgagggccatgaINSggggggccctggacgagcag							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48578090	G	G	48578089	7	5	75	1	0	1	1	0	0	0	0	0	1723	295	11	0	186	0	C12orf68	12	48578089	Frame_Shift_Ins	INS	-	TCGA-17-Z046-01A-01W-0746-08	4401839	48578089	85273806	892	82852											
C12orf41	54934	broad.mit.edu	37	chr12	49054302	49054302	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatgcagtgggcagcaGggatcctcagagaggcttac	15	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49054302	A	A	49054302	2	1	75	1	0	0	0	0	0	0	0	1	1700	987	35	4		4	C12orf41	12	49054302	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	476213	49054302	84797593	893	82853											
ADCY6	112	broad.mit.edu	37	chr12	49170886	49170886	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaatggggcactgcttaCgagatggcctcaatcatgtc	12	9	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49170886	A	A	49170886	5	1	75	1	0	0	0	0	0	0	1	0	298	550	19	3	2197	3	ADCY6	12	49170886	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	116584	49170886	84681009	894	82854											
TUBA1B	10376	broad.mit.edu	37	chr12	49525116	49525116	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaggaggcgaaggcgacagGagcagacaccgggtcccggt	17	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49525116	T	T	49525116	1	4	75	0	1	0	0	0	0	0	0	0	16870	1189	41	3		3	TUBA1B	12	49525116	5'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	354230	49525116	84326779	895	82855											
LIMA1	51474	broad.mit.edu	37	chr12	50589728	50589728	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagagtcatattaaaaatAaaagagcaaactgctgttaa	6	4	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50589728	G	G	50589728	1	3	75	0	1	0	0	0	0	0	0	0	8868	377	13	5		5	LIMA1	12	50589728	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1064612	50589728	83262167	896	82856											
BIN2	51411	broad.mit.edu	37	chr12	51696509	51696509	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcatgaccgtcccactcGctgctgtagatctcctgcag	8	16	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51696509	C	C	51696509	3	2	75	1	0	0	0	0	1	0	0	0	1439	1078	38	4	1464	4	BIN2	12	51696509	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1106781	51696509	82155386	897	82857											
KRT71	112802	broad.mit.edu	37	chr12	52938287	52938287	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatccagagccgggtcatgGaatgaggcggggcccggggc	20	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52938287	T	T	52938287	1	4	75	0	1	0	0	0	0	0	0	0	8555	1189	41	3		3	KRT71	12	52938287	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1241778	52938287	80913608	898	82858											
KRT73	319101	broad.mit.edu	37	chr12	53008470	53008470	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccacgtcctatggagaatCcagatacccctgacctcacc	7	16	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53008470	A	A	53008470	1	1	75	0	1	0	0	0	0	0	0	0	8557	870	30	3		3	KRT73	12	53008470	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	70183	53008470	80843425	899	82859											
KRT79	338785	broad.mit.edu	37	chr12	53217100	53217100	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctcaagccatggagacatCatcattcccacatccctgcc	5	18	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53217100	A	A	53217100	1	1	75	0	1	0	0	0	0	0	0	0	8563	841	29	3		3	KRT79	12	53217100	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	208630	53217100	80634795	900	82860											
KRT78	196374	broad.mit.edu	37	chr12	53237873	53237873	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttgggggtctctgggaatCtacctgcttcttgaggttct	12	8	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53237873	G	G	53237873	1	3	75	0	1	0	0	0	0	0	0	0	8562	928	32	4		4	KRT78	12	53237873	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	20773	53237873	80614022	901	82861											
TARBP2	6895	broad.mit.edu	37	chr12	53898716	53898716	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttagcttcacagtccCtagctcagccccttcctttt	4	17	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53898716	G	G	53898716	1	3	75	0	1	0	0	0	0	0	0	0	15675	696	24	4		4	TARBP2	12	53898716	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	660843	53898716	79953179	902	82862											
OR9K2	441639	broad.mit.edu	37	chr12	55523872	55523872	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttattgaacccaaggctaTgatcaacttctggtctgaaa	8	8	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55523872	A	A	55523872	3	1	75	1	0	0	0	0	1	0	0	0	11348	1464	51	5	322	5	OR9K2	12	55523872	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1625156	55523872	78328023	903	82863											
ITGA7	3679	broad.mit.edu	37	chr12	56088339	56088339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaagagattagagtcagGggtggtctacgggcttatgg	17	4	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56088339	T	T	56088339	1	4	75	0	1	0	0	0	0	0	0	0	7951	1247	43	2		2	ITGA7	12	56088339	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	564467	56088339	77763556	904	82864											
DGKA	1606	broad.mit.edu	37	chr12	56335292	56335292	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttctttttcccacacacAgggtgctctggaagttccag	8	12	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56335292	G	G	56335292	5	3	75	1	0	0	0	0	0	0	1	0	4505	202	7	5	1228	5	DGKA	12	56335292	Splice_Site	SNP	A	TCGA-17-Z046-01A-01W-0746-08	246953	56335292	77516603	905	82865											
RDH16	8608	broad.mit.edu	37	chr12	57345794	57345794	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccccaaatccatgcaacCatgcatccaaccttagcttc	3	17	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57345794	T	T	57345794	1	4	75	0	1	0	0	0	0	0	0	0	13302	609	21	4		4	RDH16	12	57345794	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1010502	57345794	76506101	906	82866											
LRP1	4035	broad.mit.edu	37	chr12	57579108	57579108	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttagacccatggggcaacttCcgatggcccgagagacccag	12	13	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57579108	T	T	57579108	1	4	75	0	1	0	0	0	0	0	0	0	9038	870	30	4		4	LRP1	12	57579108	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	233314	57579108	76272787	907	82867											
FAM19A2	338811	broad.mit.edu	37	chr12	62273785	62273785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacttcctcaggcagctgCatgaagaggagatctgggag	13	9	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62273785	A	A	62273785	1	1	75	0	1	0	0	0	0	0	0	0	5579	725	25	3		3	FAM19A2	12	62273785	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4694677	62273785	71578110	908	82868											
SRGAP1	57522	broad.mit.edu	37	chr12	64491077	64491077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattaactcagttgctggcGttctgaagctctatttccgt	8	9	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64491077	T	T	64491077	3	4	75	1	0	0	0	0	1	0	0	0	15263	1145	40	3	1793	3	SRGAP1	12	64491077	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2217292	64491077	69360818	909	82869											
C12orf56	115749	broad.mit.edu	37	chr12	64746735	64746736	+	Frame_Shift_Ins	INS	-	T	T													atttcctgacactgtttgacINStttttacactcttttttcaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64746736	T	T	64746735	7	5	75	1	0	1	1	0	0	0	0	0	1713	564	20	0	1562	0	C12orf56	12	64746735	Frame_Shift_Ins	INS	-	TCGA-17-Z046-01A-01W-0746-08	255658	64746735	69105160	910	82870	379	2									
C12orf56	115749	broad.mit.edu	37	chr12	64746741	64746741	+	Silent	SNP	A	G	G													ctgacactgtttgactttttAcactcttttttcaaaacggt							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64746741	G	G	64746741	2	3	75	1	0	0	0	0	0	0	0	1	1713	389	14	5		5	C12orf56	12	64746741	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	6	64746741	69105154	911	82871	379	2									
XPOT	11260	broad.mit.edu	37	chr12	64833020	64833020	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaagtatcttttaatctTcagggcccagaatgtgttca	8	7	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64833020	G	G	64833020	1	3	75	0	1	0	0	0	0	0	0	0	17577	1798	62	5		5	XPOT	12	64833020	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	86279	64833020	69018875	912	82872											
CCT2	10576	broad.mit.edu	37	chr12	69995041	69995041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggataaaatcatgctcttcaTttttcactattgactttttt	4	7	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69995041	C	C	69995041	1	2	75	0	1	0	0	0	0	0	0	0	2983	1508	52	5		5	CCT2	12	69995041	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	5162021	69995041	63856854	913	82873											
TPH2	121278	broad.mit.edu	37	chr12	72366182	72366182	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatacttaatgggatcctttCagacgctcatgtgctccact	7	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72366182	T	T	72366182	1	4	75	0	1	0	0	0	0	0	0	0	16526	841	29	4		4	TPH2	12	72366182	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2371141	72366182	61485713	914	82874											
NAV3	89795	broad.mit.edu	37	chr12	78604030	78604030	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaaacagcataggagccaGgggcaacgagtaaaaatcta	12	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78604030	C	C	78604030	1	2	75	0	1	0	0	0	0	0	0	0	10279	1015	35	4		4	NAV3	12	78604030	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6237848	78604030	55247865	915	82875											
LIN7A	8825	broad.mit.edu	37	chr12	81283099	81283099	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagcttgtgcactggtacTtctccagattcctgtagttt	9	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81283099	G	G	81283099	3	3	75	1	0	0	0	0	1	0	0	0	8883	1606	56	5	585	5	LIN7A	12	81283099	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2679069	81283099	52568796	916	82876											
C12orf29	91298	broad.mit.edu	37	chr12	88439689	88439689	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttagtttcctaggattatatCcatttctgttaactttacat	4	7	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88439689	G	G	88439689	1	3	75	0	1	0	0	0	0	0	0	0	1693	870	30	4		4	C12orf29	12	88439689	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7156590	88439689	45412206	917	82877											
DCN	1634	broad.mit.edu	37	chr12	91550845	91550845	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaatgttttggagaatcttCtatcaccttgaggaatgctg	9	6	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91550845	A	A	91550845	1	1	75	0	1	0	0	0	0	0	0	0	4330	928	32	3		3	DCN	12	91550845	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3111156	91550845	42301050	918	82878											
TMCC3	57458	broad.mit.edu	37	chr12	94972070	94972070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacattttgtgccatgtgcCagaaaccctctaggacttag	8	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94972070	A	A	94972070	1	1	75	0	1	0	0	0	0	0	0	0	16117	609	21	2		2	TMCC3	12	94972070	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3421225	94972070	38879825	919	82879											
APAF1	317	broad.mit.edu	37	chr12	99056233	99056233	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattttttttttaaattaGgtctctcttgatcttggatg	6	4	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99056233	T	T	99056233	5	4	75	1	0	0	0	0	0	0	1	0	757	1014	35	2	728	2	APAF1	12	99056233	Splice_Site	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4084163	99056233	34795662	920	82880											
IGF1	3479	broad.mit.edu	37	chr12	102813362	102813362	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaggcttgaggggtgcGcaatacatctccagcctcct	12	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102813362	T	T	102813362	4	4	75	1	0	0	0	0	0	1	0	0	7640	1079	38	3	332	3	IGF1	12	102813362	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3757129	102813362	31038533	921	82881											
BTBD11	121551	broad.mit.edu	37	chr12	108029180	108029180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcttgggtgagtggttccCccaggcctgtgttggctgct	16	11	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108029180	A	A	108029180	1	1	75	0	1	0	0	0	0	0	0	0	1548	638	22	2		2	BTBD11	12	108029180	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5215818	108029180	25822715	922	82882											
WSCD2	9671	broad.mit.edu	37	chr12	108620934	108620934	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcattgtgtaccagacacaAgtccaaggtgagctaggccc	10	11	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108620934	C	C	108620934	3	2	75	1	0	0	0	0	1	0	0	0	17534	69	3	5	990	5	WSCD2	12	108620934	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	591754	108620934	25230961	923	82883											
GIT2	9815	broad.mit.edu	37	chr12	110390203	110390203	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttaggtggcctgcatcagctCcagtatggatctctccctcc	9	14	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110390203	A	A	110390203	1	1	75	0	1	0	0	0	0	0	0	0	6461	870	30	3		3	GIT2	12	110390203	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1769269	110390203	23461692	924	82884											
C12orf51	283450	broad.mit.edu	37	chr12	112696854	112696854	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttcagtgaaagcaaaCagccatcctgtgaagcaggt	10	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112696854	G	G	112696854	1	3	75	0	1	0	0	0	0	0	0	0	1709	493	17	4		4	C12orf51	12	112696854	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2306651	112696854	21155041	925	82885											
PTPN11	5781	broad.mit.edu	37	chr12	112926888	112926888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcggtctcagaggtcagGgatggtccagacagaagcac	16	9	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112926888	T	T	112926888	3	4	75	1	0	0	0	0	1	0	0	0	12886	1232	43	2	1558	2	PTPN11	12	112926888	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	230034	112926888	20925007	926	82886											
FBXO21	23014	broad.mit.edu	37	chr12	117603329	117603329	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtggaagtaaagcctggcTtggaggaggagaagctgcac	17	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117603329	A	A	117603329	3	1	75	1	0	0	0	0	1	0	0	0	5790	1606	56	5	615	5	FBXO21	12	117603329	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4676441	117603329	16248566	927	82887											
NOS1	4842	broad.mit.edu	37	chr12	117672273	117672273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagacacccactctcctgCctggactggtgattgggaag	11	12	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117672273	A	A	117672273	1	1	75	0	1	0	0	0	0	0	0	0	10636	754	26	3		3	NOS1	12	117672273	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	68944	117672273	16179622	928	82888											
NOS1	4842	broad.mit.edu	37	chr12	117728305	117728305	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgtctccacagaggctgGgagagccattgttcttcctg	11	11	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117728305	A	A	117728305	1	1	75	0	1	0	0	0	0	0	0	0	10636	1247	43	4		4	NOS1	12	117728305	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	56032	117728305	16123590	929	82889											
GCN1L1	10985	broad.mit.edu	37	chr12	120580251	120580251	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctctgcagacccagcctTctaggctctgaaaggaggca	12	12	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120580251	C	C	120580251	1	2	75	0	1	0	0	0	0	0	0	0	6361	1798	62	5		5	GCN1L1	12	120580251	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2851946	120580251	13271644	930	82890											
FZD10	11211	broad.mit.edu	37	chr12	130648337	130648337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcatccgcctcttcgccGgcgccgagagcatcgcctgc	10	19	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130648337	A	A	130648337	3	1	75	1	0	0	0	0	1	0	0	0	6189	1116	39	4	852	4	FZD10	12	130648337	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	10068086	130648337	3203558	931	82891											
P2RX2	22953	broad.mit.edu	37	chr12	133197069	133197069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagacgggtacctgaagcGctgcacgttccacgaggcct	12	14	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133197069	A	A	133197069	3	1	75	1	0	0	0	0	1	0	0	0	11434	1087	38	4	700	4	P2RX2	12	133197069	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2548732	133197069	654826	932	82892											
TUBA3C	7278	broad.mit.edu	37	chr13	19751081	19751081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataccttaaatccagttgGgcaccaatctacaaactgga	6	11	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751081	T	T	19751081	3	4	75	1	0	0	0	0	1	0	0	0	16872	1232	43	2	318	2	TUBA3C	13	19751081	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08		19751081	95418797	933	82893											
SGCG	6445	broad.mit.edu	37	chr13	23778145	23778145	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcatttctttgctgtctgGctctgaatttcaggagcaaa	8	8	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23778145	A	A	23778145	1	1	75	0	1	0	0	0	0	0	0	0	14316	1218	42	4		4	SGCG	13	23778145	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4027064	23778145	91391733	934	82894											
C1QTNF9B	387911	broad.mit.edu	37	chr13	24466139	24466139	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccttggggccatgttttccTggggatcctcttgagccttg	12	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24466139	A	A	24466139	2	1	75	1	0	0	0	0	0	0	0	1	1991	1567	55	5		5	C1QTNF9B	13	24466139	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	687994	24466139	90703739	935	82895											
RNF17	56163	broad.mit.edu	37	chr13	25444721	25444721	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacttaggtgtatatttgcCttgattctatagaaacttct	6	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25444721	T	T	25444721	3	4	75	1	0	0	0	0	1	0	0	0	13572	681	24	4	4417	4	RNF17	13	25444721	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	978582	25444721	89725157	936	82896											
FLT1	2321	broad.mit.edu	37	chr13	28903678	28903678	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcacagtgcgggggagaagGagctgtaaggcagagaactg	18	6	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28903678	T	T	28903678	1	4	75	0	1	0	0	0	0	0	0	0	5999	1189	41	3		3	FLT1	13	28903678	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3458957	28903678	86266200	937	82897											
C13orf26	122046	broad.mit.edu	37	chr13	31543252	31543252	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgccaaatagaaactgttCcaagttctagccactggagt	8	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31543252	T	T	31543252	1	4	75	0	1	0	0	0	0	0	0	0	1735	870	30	4		4	C13orf26	13	31543252	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2639574	31543252	83626626	938	82898											
HSPH1	10808	broad.mit.edu	37	chr13	31722725	31722725	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaaaaaaaaaaaaaaaAaacaactcacattccagaat	1	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31722725	C	C	31722725	1	2	75	0	1	0	0	0	0	0	0	0	7501	29	1	5		5	HSPH1	13	31722725	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	179473	31722725	83447153	939	82899											
KL	9365	broad.mit.edu	37	chr13	33638051	33638051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtttaacgaccgcacagctCcgaggtttggcctctatcgt	10	13	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33638051	A	A	33638051	3	1	75	1	0	0	0	0	1	0	0	0	8402	855	30	3	2785	3	KL	13	33638051	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1915326	33638051	81531827	940	82900											
CCNA1	8900	broad.mit.edu	37	chr13	37014314	37014314	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtcaggactgagaacctGgctaaggtgtgtatgccgcg	15	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37014314	C	C	37014314	2	2	75	1	0	0	0	0	0	0	0	1	2939	1335	47	4		4	CCNA1	13	37014314	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3376263	37014314	78155564	941	82901											
FOXO1	2308	broad.mit.edu	37	chr13	41194334	41194334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagatcctcaactgctGtactacgacatccaacaatc	5	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41194334	T	T	41194334	1	4	75	0	1	0	0	0	0	0	0	0	6083	1392	48	3		3	FOXO1	13	41194334	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4180020	41194334	73975544	942	82902											
WDFY2	115825	broad.mit.edu	37	chr13	52158979	52158979	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtatggactactgccattCggccgcgaggaggggcggga	18	9	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52158979	T	T	52158979	1	4	75	0	1	0	0	0	0	0	0	0	17396	899	31	4		4	WDFY2	13	52158979	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	10964645	52158979	63010899	943	82903											
THSD1	55901	broad.mit.edu	37	chr13	52971793	52971793	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaaactcaacccactgacCttgagcaagttctgtccttt	6	14	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52971793	G	G	52971793	3	3	75	1	0	0	0	0	1	0	0	0	16000	681	24	4	1975	4	THSD1	13	52971793	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	812814	52971793	62198085	944	82904											
KLHL1	57626	broad.mit.edu	37	chr13	70469366	70469366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttgcagtttgctggcaGcatctggtccctttgttttc	10	11	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70469366	T	T	70469366	1	4	75	0	1	0	0	0	0	0	0	0	8436	986	34	3		3	KLHL1	13	70469366	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	17497573	70469366	44700512	945	82905											
PIBF1	10464	broad.mit.edu	37	chr13	73369757	73369757	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagactaaaatttaccatttAtatagtagcaattacttttg	4	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73369757	G	G	73369757	1	3	75	0	1	0	0	0	0	0	0	0	11974	464	16	5		5	PIBF1	13	73369757	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2900391	73369757	41800121	946	82906											
SLITRK6	84189	broad.mit.edu	37	chr13	86368848	86368848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcacagcgtccgtaagagatCgtaaaatagtatcagccgta	10	9	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86368848	A	A	86368848	3	1	75	1	0	0	0	0	1	0	0	0	14861	884	31	3	733	3	SLITRK6	13	86368848	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	12999091	86368848	28801030	947	82907											
SLITRK5	26050	broad.mit.edu	37	chr13	88329265	88329265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggagtaaccacttcaCctccttgccagtgagtggag	11	12	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88329265	A	A	88329265	3	1	75	1	0	0	0	0	1	0	0	0	14860	507	18	3	1624	3	SLITRK5	13	88329265	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1960417	88329265	26840613	948	82908											
DZIP1	22873	broad.mit.edu	37	chr13	96242490	96242490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagaaaaaaagaaaaaGttgttaaattaagctcccat	6	4	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96242490	T	T	96242490	1	4	75	0	1	0	0	0	0	0	0	0	4903	1044	36	3		3	DZIP1	13	96242490	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7913225	96242490	18927388	949	82909											
UBAC2	337867	broad.mit.edu	37	chr13	100037449	100037449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataagcggcaatgtcagcGccctcaggtttctgcgtttt	12	10	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100037449	T	T	100037449	1	4	75	0	1	0	0	0	0	0	0	0	16961	1102	38	3		3	UBAC2	13	100037449	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3794959	100037449	15132429	950	82910											
ZIC5	85416	broad.mit.edu	37	chr13	100617849	100617849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcgcccactggagtccCcactgatgagtaaccaaggg	15	12	0	2	rs140607831		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100617849	A	A	100617849	3	1	75	1	0	0	0	0	1	0	0	0	17808	623	22	2	221	2	ZIC5	13	100617849	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	580400	100617849	14552029	951	82911											
NALCN	259232	broad.mit.edu	37	chr13	101797419	101797419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccataaattgctctatgaGctaaaacttttgagttaaca	6	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101797419	T	T	101797419	1	4	75	0	1	0	0	0	0	0	0	0	10242	986	34	3		3	NALCN	13	101797419	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1179570	101797419	13372459	952	82912											
MYO16	23026	broad.mit.edu	37	chr13	109496698	109496698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcctgtagcagtcccCtggtgttaccaattgccaag	8	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109496698	A	A	109496698	3	1	75	1	0	0	0	0	1	0	0	0	10158	680	24	2	1073	2	MYO16	13	109496698	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7699279	109496698	5673180	953	82913											
ARHGEF7	8874	broad.mit.edu	37	chr13	111929871	111929871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tataaataagtgaagtatttGtgctcacatttgttaagtag	8	3	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111929871	A	A	111929871	1	1	75	0	1	0	0	0	0	0	0	0	913	1392	48	4		4	ARHGEF7	13	111929871	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2433173	111929871	3240007	954	82914											
RASA3	22821	broad.mit.edu	37	chr13	114781672	114781672	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcatgaacaaaacctaCcatgttgttttcaaggtttt	7	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114781672	A	A	114781672	5	1	75	1	0	0	0	0	0	0	1	0	13170	521	18	3	1270	3	RASA3	13	114781672	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2851801	114781672	388206	955	82915											
CDC16	8881	broad.mit.edu	37	chr13	115002085	115002086	+	Intron	DNP	GG	TT	TT													taagactattaaaataacagGgcagttaccacctttttttt							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	115002086	TT	TT	115002085	1	4	75	0	1	0	0	0	0	0	0	0	3088	1247	43	2		2	CDC16	13	115002085	Intron	DNP	GG	TCGA-17-Z046-01A-01W-0746-08	220413	115002085	167793	956	82916											
POTEG	404785	broad.mit.edu	37	chr14	19553613	19553613	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagatgggcaagtggtgccGccactgcttcccctggtgca	13	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19553613	C	C	19553613	3	2	75	1	0	0	0	0	1	0	0	0	12362	1087	38	4	199	4	POTEG	14	19553613	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08		19553613	87795927	957	82917											
POTEG	404785	broad.mit.edu	37	chr14	19553955	19553955	+	Intron	DEL	G	-	-													gaggtaaccaggcctgggctGggaggaggtgggatgtggga							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19553955	-	-	19553955	6	5	75	0	1	1	0	1	0	0	0	0	12362	1363	47	0		0	POTEG	14	19553955	Intron	DEL	G	TCGA-17-Z046-01A-01W-0746-08	342	19553955	87795585	958	82918											
POTEG	404785	broad.mit.edu	37	chr14	19566124	19566124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttaggttagttttcccCaacctttttggcaccaggga	8	10	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19566124	A	A	19566124	1	1	75	0	1	0	0	0	0	0	0	0	12362	609	21	2		2	POTEG	14	19566124	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	12169	19566124	87783416	959	82919											
TEP1	7011	broad.mit.edu	37	chr14	20856284	20856284	+	Intron	DEL	C	-	-													gtcgaaatcagtgaggtcttCcgaaaagggcagggggaaaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20856284	-	-	20856284	6	5	75	0	1	1	0	1	0	0	0	0	15881	870	30	0		0	TEP1	14	20856284	Intron	DEL	C	TCGA-17-Z046-01A-01W-0746-08	1290160	20856284	86493256	960	82920											
RNASE2	6036	broad.mit.edu	37	chr14	21387588	21387588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaacaatccccagagttgGgacaggaggggcagcgacag	15	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21387588	T	T	21387588	1	4	75	0	1	0	0	0	0	0	0	0	13515	1247	43	2		2	RNASE2	14	21387588	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	531304	21387588	85961952	961	82921											
CHD8	57680	broad.mit.edu	37	chr14	21870330	21870330	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagatgaaaagactatcAagagaataatatctaaccat	6	5	2	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21870330	T	T	21870330	1	4	75	0	1	0	0	0	0	0	0	0	3362	145	5	5		5	CHD8	14	21870330	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	482742	21870330	85479210	962	82922											
DHRS4	10901	broad.mit.edu	37	chr14	24435112	24435112	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggcactggtccacaatggGaagatggtcagctctcttct	12	10	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24435112	A	A	24435112	1	1	75	0	1	0	0	0	0	0	0	0	4532	1189	41	4		4	DHRS4	14	24435112	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2564782	24435112	82914428	963	82923											
TGM1	7051	broad.mit.edu	37	chr14	24729317	24729317	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagttctctccctgggccTcacctacttctggccagttc	7	17	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24729317	C	C	24729317	1	2	75	0	1	0	0	0	0	0	0	0	15952	1566	54	5		5	TGM1	14	24729317	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	294205	24729317	82620223	964	82924											
NYNRIN	57523	broad.mit.edu	37	chr14	24878499	24878499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagccgggggatcaagggaGtatgcagttagattttaagg	16	4	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24878499	T	T	24878499	3	4	75	1	0	0	0	0	1	0	0	0	10891	1029	36	3	1509	3	NYNRIN	14	24878499	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	149182	24878499	82471041	965	82925											
HEATR5A	25938	broad.mit.edu	37	chr14	31856408	31856408	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctccaagaagaccaccTatagtagttcgaagaataaa	6	8	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31856408	A	A	31856408	2	1	75	1	0	0	0	0	0	0	0	1	7098	1512	53	5		5	HEATR5A	14	31856408	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	6977909	31856408	75493132	966	82926											
NPAS3	64067	broad.mit.edu	37	chr14	34204551	34204551	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatataaggtaagccggttcCgggaggggagacattgctgt	16	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34204551	T	T	34204551	1	4	75	0	1	0	0	0	0	0	0	0	10659	667	23	4		4	NPAS3	14	34204551	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2348143	34204551	73144989	967	82927											
MIA2	117153	broad.mit.edu	37	chr14	39721909	39721909	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggggagccctcaacaaaGcaagtattttggaaaaacac	9	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39721909	A	A	39721909	1	1	75	0	1	0	0	0	0	0	0	0	9657	986	34	4		4	MIA2	14	39721909	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5517358	39721909	67627631	968	82928											
MDGA2	161357	broad.mit.edu	37	chr14	47315098	47315098	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatatgaatgaaacaaacCtaaatgtggagctttgattt	7	5	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47315098	T	T	47315098	1	4	75	0	1	0	0	0	0	0	0	0	9500	696	24	4		4	MDGA2	14	47315098	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7593189	47315098	60034442	969	82929											
SDCCAG1	9147	broad.mit.edu	37	chr14	50207006	50207006	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacattgcaaaatatgaagGgcctgaaatgttactctgtg	9	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50207006	T	T	50207006	1	4	75	0	1	0	0	0	0	0	0	0	14070	1247	43	2		2	SDCCAG1	14	50207006	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2891908	50207006	57142534	970	82930											
SLC35F4	341880	broad.mit.edu	37	chr14	58047908	58047908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaaaggcaggcatcgcGcattgaatcaagtatgccat	10	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58047908	T	T	58047908	1	4	75	0	1	0	0	0	0	0	0	0	14705	1102	38	3		3	SLC35F4	14	58047908	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7840902	58047908	49301632	971	82931											
SYNE2	23224	broad.mit.edu	37	chr14	64518741	64518741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaaaagaagaatttggagGatggaataaataacttgaag	11	1	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64518741	T	T	64518741	3	4	75	1	0	0	0	0	1	0	0	0	15565	1174	41	3	8296	3	SYNE2	14	64518741	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	6470833	64518741	42830799	972	82932											
SPTB	6710	broad.mit.edu	37	chr14	65289517	65289517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccctcccaaggggaccCccacctccctgagcccgaca	8	21	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65289517	A	A	65289517	1	1	75	0	1	0	0	0	0	0	0	0	15236	638	22	2		2	SPTB	14	65289517	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	770776	65289517	42060023	973	82933											
PLEKHH1	57475	broad.mit.edu	37	chr14	68040019	68040019	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagaagtcgggctacctGctgaaaatggggagccaggt	16	8	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68040019	A	A	68040019	2	1	75	1	0	0	0	0	0	0	0	1	12171	1306	46	4		4	PLEKHH1	14	68040019	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2750502	68040019	39309521	974	82934											
BATF	10538	broad.mit.edu	37	chr14	76012780	76012780	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccttcctagacactaacctCcggtgctgatccccacccct	5	19	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76012780	T	T	76012780	1	4	75	0	1	0	0	0	0	0	0	0	1330	870	30	4		4	BATF	14	76012780	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7972761	76012780	31336760	975	82935											
NRXN3	9369	broad.mit.edu	37	chr14	79111534	79111534	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtctcagaacccgatcCagagcagcagtgatgaaatc	9	12	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79111534	T	T	79111534	1	4	75	0	1	0	0	0	0	0	0	0	10762	609	21	4		4	NRXN3	14	79111534	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3098754	79111534	28238006	976	82936											
SEL1L	6400	broad.mit.edu	37	chr14	81952897	81952897	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacacatgactattaagcttGctccttcaatttctggcagc	6	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81952897	A	A	81952897	1	1	75	0	1	0	0	0	0	0	0	0	14123	1334	46	4		4	SEL1L	14	81952897	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2841363	81952897	25396643	977	82937											
TC2N	123036	broad.mit.edu	37	chr14	92251489	92251489	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaaatataaggaaggaTaaaaactcctactaacctgg	7	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92251489	C	C	92251489	1	2	75	0	1	0	0	0	0	0	0	0	15787	1421	49	5		5	TC2N	14	92251489	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	10298592	92251489	15098051	978	82938											
SERPINA12	145264	broad.mit.edu	37	chr14	94956263	94956263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctccttaaccctgggacCctggtttcaaaacaccataa	8	13	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94956263	A	A	94956263	1	1	75	0	1	0	0	0	0	0	0	0	14202	638	22	2		2	SERPINA12	14	94956263	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2704774	94956263	12393277	979	82939											
AK7	122481	broad.mit.edu	37	chr14	96864314	96864314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgccttggtggcacccaGcaagcactcgggaaaggtaa	12	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96864314	T	T	96864314	1	4	75	0	1	0	0	0	0	0	0	0	444	986	34	3		3	AK7	14	96864314	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1908051	96864314	10485226	980	82940											
SETD3	84193	broad.mit.edu	37	chr14	99929778	99929778	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttgacctaatcaagtttCtacatgacattattaaaata	3	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99929778	T	T	99929778	1	4	75	0	1	0	0	0	0	0	0	0	14245	928	32	4		4	SETD3	14	99929778	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3065464	99929778	7419762	981	82941											
JAG2	3714	broad.mit.edu	37	chr14	105618437	105618437	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggggaaaagccggcccccCgctcccccacaacccacact	8	21	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105618437	T	T	105618437	1	4	75	0	1	0	0	0	0	0	0	0	8005	667	23	4		4	JAG2	14	105618437	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5688659	105618437	1731103	982	82942											
OR4N4	283694	broad.mit.edu	37	chr15	22382625	22382625	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attattttcaccataaggtcAgaccctgggctcacagcccc	7	14	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22382625	T	T	22382625	2	4	75	1	0	0	0	0	0	0	0	1	11172	175	7	5		5	OR4N4	15	22382625	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08		22382625	80148767	983	82943											
GABRA5	2558	broad.mit.edu	37	chr15	27182421	27182421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggctccagactgaacCagtaccacctgatggggcag	12	11	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182421	A	A	27182421	3	1	75	1	0	0	0	0	1	0	0	0	6224	595	21	2	692	2	GABRA5	15	27182421	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4799796	27182421	75348971	984	82944											
GABRG3	2567	broad.mit.edu	37	chr15	27271973	27271973	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcatcaataaacatggtaaGaagctcctttattttctgat	6	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27271973	A	A	27271973	1	1	75	0	1	0	0	0	0	0	0	0	6233	957	33	4		4	GABRG3	15	27271973	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	89552	27271973	75259419	985	82945											
GABRG3	2567	broad.mit.edu	37	chr15	27586350	27586350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagacatttaatggtaGggtacttttttgtgatagaa	12	2	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27586350	T	T	27586350	1	4	75	0	1	0	0	0	0	0	0	0	6233	1015	35	2		2	GABRG3	15	27586350	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	314377	27586350	74945042	986	82946											
OCA2	4948	broad.mit.edu	37	chr15	28171559	28171559	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctatttggttatgtgtatActcatgaaaccaacactgta	6	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28171559	T	T	28171559	1	4	75	0	1	0	0	0	0	0	0	0	10910	406	14	5		5	OCA2	15	28171559	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	585209	28171559	74359833	987	82947											
OCA2	4948	broad.mit.edu	37	chr15	28326894	28326894	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgaggggtcagctccacCggctccccgaggaagcctgc	15	15	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28326894	T	T	28326894	3	4	75	1	0	0	0	0	1	0	0	0	10910	652	23	4	2481	4	OCA2	15	28326894	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	155335	28326894	74204498	988	82948											
HERC2	8924	broad.mit.edu	37	chr15	28412878	28412878	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatgatgcttgcggctccCaggtcatccgtcactgggat	12	12	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28412878	A	A	28412878	2	1	75	1	0	0	0	0	0	0	0	1	7125	581	21	2		2	HERC2	15	28412878	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	85984	28412878	74118514	989	82949											
AQR	9716	broad.mit.edu	37	chr15	35207119	35207119	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaagagtaaatatctccTattttagagggcacttttgt	7	7	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35207119	A	A	35207119	1	1	75	0	1	0	0	0	0	0	0	0	837	1537	53	5		5	AQR	15	35207119	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	6794241	35207119	67324273	990	82950											
AQR	9716	broad.mit.edu	37	chr15	35240608	35240608	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaagagtaaaaagcatagAatacttcattagttaccacc	6	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35240608	C	C	35240608	1	2	75	0	1	0	0	0	0	0	0	0	837	261	9	5		5	AQR	15	35240608	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	33489	35240608	67290784	991	82951											
MEIS2	4212	broad.mit.edu	37	chr15	37187109	37187109	+	Intron	DEL	C	-	-													agattccttttcacttattgCcttggtttaaaaagaaaaaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37187109	-	-	37187109	6	5	75	0	1	1	0	1	0	0	0	0	9561	754	26	0		0	MEIS2	15	37187109	Intron	DEL	C	TCGA-17-Z046-01A-01W-0746-08	1946501	37187109	65344283	992	82952											
MGA	23269	broad.mit.edu	37	chr15	42042457	42042457	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcagatgtgtttcagcaaGaacaaggcatctctgactta	8	8	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42042457	T	T	42042457	4	4	75	1	0	0	0	0	0	1	0	0	9633	943	33	3	6714	3	MGA	15	42042457	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4855348	42042457	60488935	993	82953											
MGA	23269	broad.mit.edu	37	chr15	42059364	42059364	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtcagttggacacaaaatGaacttaacagggaatgacca	11	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42059364	A	A	42059364	3	1	75	1	0	0	0	0	1	0	0	0	9633	1290	45	4	9174	4	MGA	15	42059364	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	16907	42059364	60472028	994	82954											
MAPKBP1	23005	broad.mit.edu	37	chr15	42110568	42110568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgagtgagttccacccCtggaacttcactcttctatt	6	13	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42110568	A	A	42110568	1	1	75	0	1	0	0	0	0	0	0	0	9384	696	24	2		2	MAPKBP1	15	42110568	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	51204	42110568	60420824	995	82955											
PLA2G4D	283748	broad.mit.edu	37	chr15	42373551	42373551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccacaaagcccactcacGctcccatgtctccacacaca	4	19	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42373551	T	T	42373551	1	4	75	0	1	0	0	0	0	0	0	0	12099	1102	38	3		3	PLA2G4D	15	42373551	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	262983	42373551	60157841	996	82956											
CTDSPL2	51496	broad.mit.edu	37	chr15	44751472	44751472	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acggtggctcacgcctgtaaTcccagcactttgagagcccc	10	15	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44751472	A	A	44751472	1	1	75	0	1	0	0	0	0	0	0	0	4040	1450	50	5		5	CTDSPL2	15	44751472	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2377921	44751472	57779920	997	82957											
SEMA6D	80031	broad.mit.edu	37	chr15	48060698	48060698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcataaaatttactcaaaCtttatttaaaaatgcaacag	2	7	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48060698	T	T	48060698	1	4	75	0	1	0	0	0	0	0	0	0	14155	580	20	4		4	SEMA6D	15	48060698	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3309226	48060698	54470694	998	82958											
SEMA6D	80031	broad.mit.edu	37	chr15	48062529	48062529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtctctggggatcctaGtttgattaaagacaaaatat	9	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48062529	T	T	48062529	1	4	75	0	1	0	0	0	0	0	0	0	14155	1044	36	3		3	SEMA6D	15	48062529	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1831	48062529	54468863	999	82959											
CEP152	22995	broad.mit.edu	37	chr15	49031495	49031495	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggggcagtgctattatgtGcaaggaaacacgaaattaag	12	5	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49031495	A	A	49031495	1	1	75	0	1	0	0	0	0	0	0	0	3278	1334	46	4		4	CEP152	15	49031495	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	968966	49031495	53499897	1000	82960											
ATP8B4	79895	broad.mit.edu	37	chr15	50223576	50223576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagttccaatgccaactcCaactcagtatttaacaccca	4	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50223576	A	A	50223576	1	1	75	0	1	0	0	0	0	0	0	0	1201	609	21	2		2	ATP8B4	15	50223576	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1192081	50223576	52307816	1001	82961											
AP4E1	23431	broad.mit.edu	37	chr15	51238016	51238016	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttcagcatcatcctgaTataaaatgtatagcttgtca	5	7	3	1	rs17599981	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51238016	C	C	51238016	1	2	75	0	1	0	0	0	0	0	0	0	754	1421	49	5		5	AP4E1	15	51238016	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1014440	51238016	51293376	1002	82962											
ZNF280D	54816	broad.mit.edu	37	chr15	56974587	56974587	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatcaattttcctttctctGaatcaatagttgtgttttta	5	6	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56974587	A	A	56974587	3	1	75	1	0	0	0	0	1	0	0	0	17943	1294	45	4	2122	4	ZNF280D	15	56974587	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5736571	56974587	45556805	1003	82963											
ALDH1A2	8854	broad.mit.edu	37	chr15	58287358	58287358	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaaagaaaaaagcatggtCactcccagaaagtttagatt	8	7	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58287358	T	T	58287358	1	4	75	0	1	0	0	0	0	0	0	0	491	841	29	4		4	ALDH1A2	15	58287358	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1312771	58287358	44244034	1004	82964											
ITGA11	22801	broad.mit.edu	37	chr15	68620556	68620556	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagatgttgatcttggatGgctcaaagtggaggctggca	16	5	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68620556	A	A	68620556	3	1	75	1	0	0	0	0	1	0	0	0	7944	1348	47	4	1680	4	ITGA11	15	68620556	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	10333198	68620556	33910836	1005	82965											
ITGA11	22801	broad.mit.edu	37	chr15	68661404	68661404	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagtgatatcagctgggtCatctcatggagtagcaggaa	14	7	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68661404	A	A	68661404	1	1	75	0	1	0	0	0	0	0	0	0	7944	841	29	3		3	ITGA11	15	68661404	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	40848	68661404	33869988	1006	82966											
C15orf60	283677	broad.mit.edu	37	chr15	73766133	73766133	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttatcagttatagaaatGtattatcttttacatatttt	4	3	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73766133	A	A	73766133	1	1	75	0	1	0	0	0	0	0	0	0	1821	1392	48	4		4	C15orf60	15	73766133	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5104729	73766133	28765259	1007	82967											
AP3B2	8120	broad.mit.edu	37	chr15	83333659	83333659	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtttttccttctcctttcTcttctcccgatttgagcact	6	13	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83333659	C	C	83333659	3	2	75	1	0	0	0	0	1	0	0	0	747	1559	54	5	1280	5	AP3B2	15	83333659	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	9567526	83333659	19197733	1008	82968											
ALPK3	57538	broad.mit.edu	37	chr15	85401881	85401881	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcactaccccatgacagataGcatatccctcctcgggattc	7	15	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85401881	A	A	85401881	1	1	75	0	1	0	0	0	0	0	0	0	546	986	34	4		4	ALPK3	15	85401881	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2068222	85401881	17129511	1009	82969											
AGBL1	123624	broad.mit.edu	37	chr15	86822822	86822822	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaaatgaccctgcaccccCctcccacctctcccttattc	2	22	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86822822	T	T	86822822	1	4	75	0	1	0	0	0	0	0	0	0	375	638	22	4		4	AGBL1	15	86822822	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1420941	86822822	15708570	1010	82970											
NTRK3	4916	broad.mit.edu	37	chr15	88679009	88679009	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctacaagagtccttctgTccctactggtagatcagctc	8	14	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88679009	G	G	88679009	1	3	75	0	1	0	0	0	0	0	0	0	10803	1682	58	5		5	NTRK3	15	88679009	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1856187	88679009	13852383	1011	82971											
AEN	64782	broad.mit.edu	37	chr15	89172334	89172334	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggagctcgtgatctcccCactcggtgctgcctcccccc	10	18	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89172334	T	T	89172334	1	4	75	0	1	0	0	0	0	0	0	0	351	609	21	4		4	AEN	15	89172334	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	493325	89172334	13359058	1012	82972											
SLCO3A1	28232	broad.mit.edu	37	chr15	92459412	92459412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgggcgcgctgctgtcgGcgctgcccgagttcctgacc	15	16	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92459412	T	T	92459412	3	4	75	1	0	0	0	0	1	0	0	0	14842	1203	42	3	376	3	SLCO3A1	15	92459412	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3287078	92459412	10071980	1013	82973											
ARRDC4	91947	broad.mit.edu	37	chr15	98513325	98513325	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctttacctagaaaatacCtaggaacagaatatatacac	5	8	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98513325	T	T	98513325	1	4	75	0	1	0	0	0	0	0	0	0	989	696	24	4		4	ARRDC4	15	98513325	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6053913	98513325	4018067	1014	82974											
LASS3	204219	broad.mit.edu	37	chr15	100942990	100942990	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttaaacaatccatctcTttgcctttggtagcctcttc	4	12	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100942990	A	A	100942990	3	1	75	1	0	0	0	0	1	0	0	0	8712	1606	56	5	75	5	LASS3	15	100942990	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2429665	100942990	1588402	1015	82975											
LASS3	204219	broad.mit.edu	37	chr15	101016465	101016465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactaaaacctccttttataCctatttatatcccaccagat	1	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101016465	A	A	101016465	1	1	75	0	1	0	0	0	0	0	0	0	8712	522	18	3		3	LASS3	15	101016465	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	73475	101016465	1514927	1016	82976											
LRRK1	79705	broad.mit.edu	37	chr15	101605576	101605576	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattcctacctggtcttagCgggcctcgccgatgggcttg	13	12	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101605576	T	T	101605576	3	4	75	1	0	0	0	0	1	0	0	0	9119	768	27	4	5056	4	LRRK1	15	101605576	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	589111	101605576	925816	1017	82977											
NARFL	64428	broad.mit.edu	37	chr16	786372	786372	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagaccgaaactacaacCagcctctgctgactgggtgc	12	12	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	786372	T	T	786372	2	4	75	1	0	0	0	0	0	0	0	1	10262	581	21	4		4	NARFL	16	786372	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08		786372	89568381	1018	82978											
PRSS21	10942	broad.mit.edu	37	chr16	2868654	2868654	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccctccatccagggcccctGactgctctcttctcttctgc	7	19	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2868654	T	T	2868654	1	4	75	0	1	0	0	0	0	0	0	0	12724	1305	45	3		3	PRSS21	16	2868654	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2082282	2868654	87486099	1019	82979											
MEFV	4210	broad.mit.edu	37	chr16	3298801	3298801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcccctgagaggaggtGgccatccctgctgccctgtg	13	14	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3298801	A	A	3298801	1	1	75	0	1	0	0	0	0	0	0	0	9552	1363	47	4		4	MEFV	16	3298801	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	430147	3298801	87055952	1020	82980											
ZNF75A	7627	broad.mit.edu	37	chr16	3367176	3367176	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatacagatgtgtgattatGtttattccaacagggttaaa	10	4	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3367176	A	A	3367176	1	1	75	0	1	0	0	0	0	0	0	0	18262	1392	48	4		4	ZNF75A	16	3367176	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	68375	3367176	86987577	1021	82981											
A2BP1	54715	broad.mit.edu	37	chr16	7657231	7657231	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttgtgattcatttgcaaTtatataagatgttgaatcaa	7	3	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7657231	C	C	7657231	1	2	75	0	1	0	0	0	0	0	0	0	3	1508	52	5		5	A2BP1	16	7657231	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	4290055	7657231	82697522	1022	82982											
A2BP1	54715	broad.mit.edu	37	chr16	7743159	7743159	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccccgcatgcttatttcatGatctttctaaactctgaggt	6	11	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7743159	T	T	7743159	1	4	75	0	1	0	0	0	0	0	0	0	3	1305	45	3		3	A2BP1	16	7743159	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	85928	7743159	82611594	1023	82983											
NOMO1	23420	broad.mit.edu	37	chr16	14956769	14956769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagattagactattctcaGgaacaagggctgggagaggg	14	5	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14956769	T	T	14956769	1	4	75	0	1	0	0	0	0	0	0	0	10626	1015	35	2		2	NOMO1	16	14956769	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7213610	14956769	75397984	1024	82984											
GP2	2813	broad.mit.edu	37	chr16	20331665	20331665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctgtctgcaagatgctGctgcagtttgggtctcgcag	12	11	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20331665	T	T	20331665	3	4	75	1	0	0	0	0	1	0	0	0	6647	1310	46	3	855	3	GP2	16	20331665	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5374896	20331665	70023088	1025	82985											
OTOA	146183	broad.mit.edu	37	chr16	21696488	21696488	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggctgggccgctggccatGgtgctgaccatgtgctcctg	16	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21696488	C	C	21696488	1	2	75	0	1	0	0	0	0	0	0	0	11396	1363	47	4		4	OTOA	16	21696488	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1364823	21696488	68658265	1026	82986											
SCNN1G	6340	broad.mit.edu	37	chr16	23223619	23223619	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactagagttttacttctgTtgtcaagcctggcttaaatt	7	7	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23223619	C	C	23223619	1	2	75	0	1	0	0	0	0	0	0	0	14043	1740	60	5		5	SCNN1G	16	23223619	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1527131	23223619	67131134	1027	82987											
PLK1	5347	broad.mit.edu	37	chr16	23692141	23692141	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtgggatcagatggccCtggttctggatggtcaaacc	14	9	3	1	rs429894		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23692141	G	G	23692141	1	3	75	0	1	0	0	0	0	0	0	0	12189	696	24	4		4	PLK1	16	23692141	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	468522	23692141	66662612	1028	82988											
HS3ST4	9951	broad.mit.edu	37	chr16	26147693	26147693	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctcctcctccttcatgCagccaggattgcctccagtg	8	15	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26147693	A	A	26147693	1	1	75	0	1	0	0	0	0	0	0	0	7434	725	25	3		3	HS3ST4	16	26147693	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2455552	26147693	64207060	1029	82989											
GSG1L	146395	broad.mit.edu	37	chr16	27802831	27802832	+	Intron	DNP	CC	AA	AA													gtgctgaaagccaccttcctCcacccacatcctgtctaccc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	27802832	AA	AA	27802831	1	1	75	0	1	0	0	0	0	0	0	0	6887	870	30	3		3	GSG1L	16	27802831	Intron	DNP	CC	TCGA-17-Z046-01A-01W-0746-08	1655138	27802831	62551922	1030	82990											
ITGAX	3687	broad.mit.edu	37	chr16	31374128	31374128	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtaggggaggtggctgggGcagaggagaggatggagggg	27	2	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31374128	C	C	31374128	1	2	75	0	1	0	0	0	0	0	0	0	7959	1218	42	4		4	ITGAX	16	31374128	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3571297	31374128	58980625	1031	82991											
ARMC5	79798	broad.mit.edu	37	chr16	31473873	31473873	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagctccggcagcgccgGgatcctaatggagctagccc	14	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31473873	T	T	31473873	2	4	75	1	0	0	0	0	0	0	0	1	958	1219	43	2		2	ARMC5	16	31473873	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	99745	31473873	58880880	1032	82992											
MYLK3	91807	broad.mit.edu	37	chr16	46763106	46763106	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcaagaagaggagccagcTgacctcccaagacagacaca	10	12	1	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46763106	A	A	46763106	1	1	75	0	1	0	0	0	0	0	0	0	10152	1595	55	5		5	MYLK3	16	46763106	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	15289233	46763106	43591647	1033	82993											
SLC6A2	6530	broad.mit.edu	37	chr16	55719039	55719039	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttaccctggtcccctccCctctcctctgggcaggcgtg	9	18	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55719039	A	A	55719039	1	1	75	0	1	0	0	0	0	0	0	0	14797	638	22	2		2	SLC6A2	16	55719039	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	8955933	55719039	34635714	1034	82994											
GNAO1	2775	broad.mit.edu	37	chr16	56374607	56374607	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggtcctcccgtctccgTcctggtggtctccgtcccgg	13	16	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56374607	C	C	56374607	1	2	75	0	1	0	0	0	0	0	0	0	6572	1682	58	5		5	GNAO1	16	56374607	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	655568	56374607	33980146	1035	82995											
NUDT21	11051	broad.mit.edu	37	chr16	56468719	56468719	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgttccttaggctttgtaAtatgtgcaggaatatatgga	10	4	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56468719	G	G	56468719	3	3	75	1	0	0	0	0	1	0	0	0	10833	101	4	5	201	5	NUDT21	16	56468719	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	94112	56468719	33886034	1036	82996											
CNGB1	1258	broad.mit.edu	37	chr16	57949037	57949037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgcatctcccctcgggCcatcccttgaggaactcccc	7	17	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57949037	A	A	57949037	1	1	75	0	1	0	0	0	0	0	0	0	3632	754	26	3		3	CNGB1	16	57949037	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1480318	57949037	32405716	1037	82997											
KCTD19	146212	broad.mit.edu	37	chr16	67328628	67328628	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaggggttggttagtgaGtagagacttccatcaggcca	14	7	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67328628	A	A	67328628	1	1	75	0	1	0	0	0	0	0	0	0	8176	1044	36	4		4	KCTD19	16	67328628	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	9379591	67328628	23026125	1038	82998											
CDH3	1001	broad.mit.edu	37	chr16	68721564	68721564	+	Frame_Shift_Del	DEL	C	-	-													tcacggacaaggacctgtctCcccacacctcccctttccag							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68721564	-	-	68721564	7	5	75	1	0	1	0	1	0	0	0	0	3141	855	30	0	1766	0	CDH3	16	68721564	Frame_Shift_Del	DEL	C	TCGA-17-Z046-01A-01W-0746-08	1392936	68721564	21633189	1039	82999											
HYDIN	54768	broad.mit.edu	37	chr16	71025330	71025330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgaaatgcagagattcaCtcattgggctgtcatcgcca	9	9	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71025330	A	A	71025330	1	1	75	0	1	0	0	0	0	0	0	0	7537	580	20	3		3	HYDIN	16	71025330	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2303766	71025330	19329423	1040	83000											
ZFHX3	463	broad.mit.edu	37	chr16	72992414	72992414	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagtagaagctgtgcccctcGacagggtctggagcacgtta	13	10	1	1	rs62620235	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72992414	A	A	72992414	3	1	75	1	0	0	0	0	1	0	0	0	17760	1059	37	4	9516	4	ZFHX3	16	72992414	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1967084	72992414	17362339	1041	83001											
CLEC18B	497190	broad.mit.edu	37	chr16	74447481	74447481	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagcagggcttacccggGggagtaggcacagacaaagg	17	8	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74447481	A	A	74447481	3	1	75	1	0	0	0	0	1	0	0	0	3535	1232	43	4	857	4	CLEC18B	16	74447481	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1455067	74447481	15907272	1042	83002											
NUDT7	283927	broad.mit.edu	37	chr16	77759333	77759333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttttattttagaaacaGtttgctagatgatgctaagg	9	3	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77759333	T	T	77759333	3	4	75	1	0	0	0	0	1	0	0	0	10839	1029	36	3	47	3	NUDT7	16	77759333	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3311852	77759333	12595420	1043	83003											
WWOX	51741	broad.mit.edu	37	chr16	78420706	78420706	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttactgtaacttgataccatGaactacacttgctgttattt	5	8	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78420706	T	T	78420706	1	4	75	0	1	0	0	0	0	0	0	0	17541	1305	45	3		3	WWOX	16	78420706	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	661373	78420706	11934047	1044	83004											
CDYL2	124359	broad.mit.edu	37	chr16	80718706	80718706	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaataccctttttttggCttggccaggggagggttaat	12	8	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80718706	T	T	80718706	2	4	75	1	0	0	0	0	0	0	0	1	3216	796	28	4		4	CDYL2	16	80718706	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2298000	80718706	9636047	1045	83005											
BCMO1	53630	broad.mit.edu	37	chr16	81272421	81272421	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggaaggagcaggagagcagGaaggaaacgcaggaggaggg	22	4	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81272421	A	A	81272421	1	1	75	0	1	0	0	0	0	0	0	0	1389	1189	41	4		4	BCMO1	16	81272421	5'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	553715	81272421	9082332	1046	83006											
INPP5K	51763	broad.mit.edu	37	chr17	1416816	1416816	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtcattaaaggcagcatcGgaaaggaggcttatgatccc	12	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1416816	A	A	1416816	2	1	75	1	0	0	0	0	0	0	0	1	7830	1103	39	4		4	INPP5K	17	1416816	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08		1416816	79778394	1047	83007											
P2RX5	5026	broad.mit.edu	37	chr17	3592997	3592997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggccaggagtcactcGgtccctcaccaacctgagtg	12	15	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3592997	T	T	3592997	1	4	75	0	1	0	0	0	0	0	0	0	11437	1131	39	1		1	P2RX5	17	3592997	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2176181	3592997	77602213	1048	83008											
MYBBP1A	10514	broad.mit.edu	37	chr17	4443251	4443251	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttggcatccttcttctccAacttggggcgcctgaaggga	11	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4443251	C	C	4443251	3	2	75	1	0	0	0	0	1	0	0	0	10102	131	5	5	584	5	MYBBP1A	17	4443251	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	850254	4443251	76751959	1049	83009											
TP53	7157	broad.mit.edu	37	chr17	7577142	7577142	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcaaagctgttccgtcCcagtagattaccactactca	5	15	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577142	A	A	7577142	4	1	75	1	0	0	0	0	0	1	0	0	16505	632	22	2	490	2	TP53	17	7577142	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3133891	7577142	73618068	1050	83010											
CHD3	1107	broad.mit.edu	37	chr17	7810090	7810090	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctgcctctgtccctgaGttgtaagcttgcgctggtgt	11	12	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7810090	A	A	7810090	1	1	75	0	1	0	0	0	0	0	0	0	3357	1044	36	4		4	CHD3	17	7810090	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	232948	7810090	73385120	1051	83011											
MYH8	4626	broad.mit.edu	37	chr17	10304031	10304031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggagaggtcagagcgctgCttctccgctttggctcggga	16	11	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10304031	A	A	10304031	3	1	75	1	0	0	0	0	1	0	0	0	10135	796	28	3	2458	3	MYH8	17	10304031	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2493941	10304031	70891179	1052	83012											
MYH8	4626	broad.mit.edu	37	chr17	10304093	10304093	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccccagctcctcaatgcGggcctgggaatgaaagaagc	11	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10304093	A	A	10304093	3	1	75	1	0	0	0	0	1	0	0	0	10135	1116	39	4	2520	4	MYH8	17	10304093	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	62	10304093	70891117	1053	83013											
MYH1	4619	broad.mit.edu	37	chr17	10400556	10400556	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttgtttatagttggaaaaGattctttcaaatcttttatt	5	3	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10400556	T	T	10400556	1	4	75	0	1	0	0	0	0	0	0	0	10123	957	33	3		3	MYH1	17	10400556	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	96463	10400556	70794654	1054	83014											
MYH1	4619	broad.mit.edu	37	chr17	10411835	10411835	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccagcatagtgaatcaaaGagaagtgggcctcaggcttg	13	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10411835	T	T	10411835	3	4	75	1	0	0	0	0	1	0	0	0	10123	942	33	3	4177	3	MYH1	17	10411835	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	11279	10411835	70783375	1055	83015											
MYH1	4619	broad.mit.edu	37	chr17	10415822	10415822	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgagcttatagatggaCactctttcatctgaagtaaa	8	8	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10415822	A	A	10415822	2	1	75	1	0	0	0	0	0	0	0	1	10123	465	17	3		3	MYH1	17	10415822	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3987	10415822	70779388	1056	83016											
DNAH9	1770	broad.mit.edu	37	chr17	11837392	11837392	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaatggttatcatcaggtgAgactctgctctgtgcttctg	10	9	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11837392	T	T	11837392	1	4	75	0	1	0	0	0	0	0	0	0	4648	319	11	5		5	DNAH9	17	11837392	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1421570	11837392	69357818	1057	83017											
DNAH9	1770	broad.mit.edu	37	chr17	11845782	11845782	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agattcagcgctcactgaggGagctggagctcggcttaaag	14	9	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11845782	T	T	11845782	4	4	75	1	0	0	0	0	0	1	0	0	4648	1175	41	3	13089	3	DNAH9	17	11845782	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	8390	11845782	69349428	1058	83018											
RICH2	9912	broad.mit.edu	37	chr17	12859271	12859271	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcaattgttttaggaccCaacctcctatggccacaagc	8	12	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12859271	A	A	12859271	2	1	75	1	0	0	0	0	0	0	0	1	13466	581	21	2		2	RICH2	17	12859271	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1013489	12859271	68335939	1059	83019											
RAI1	10743	broad.mit.edu	37	chr17	17699559	17699559	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagtcgggcaagcgggtgggGaagccctcacccaaggctgc	16	12	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17699559	C	C	17699559	2	2	75	1	0	0	0	0	0	0	0	1	13115	1161	41	4		4	RAI1	17	17699559	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4840288	17699559	63495651	1060	83020											
ZNF286B	729288	broad.mit.edu	37	chr17	18575720	18575720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtgagccgtctgtccgGggagctctcgatggcgcggg	18	11	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18575720	T	T	18575720	1	4	75	0	1	0	0	0	0	0	0	0	17950	1247	43	2		2	ZNF286B	17	18575720	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	876161	18575720	62619490	1061	83021											
SLC5A10	125206	broad.mit.edu	37	chr17	18916964	18916964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccctgcttggagcctGggtgtcctcatttgtaaatt	9	11	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18916964	T	T	18916964	1	4	75	0	1	0	0	0	0	0	0	0	14776	1363	47	2		2	SLC5A10	17	18916964	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	341244	18916964	62278246	1062	83022											
MAP2K3	5606	broad.mit.edu	37	chr17	21201656	21201656	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgggccagggcctgatgGctcatgggagtgcaggggac	19	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21201656	T	T	21201656	1	4	75	0	1	0	0	0	0	0	0	0	9330	1218	42	3		3	MAP2K3	17	21201656	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2284692	21201656	59993554	1063	83023											
MAP2K3	5606	broad.mit.edu	37	chr17	21205487	21205487	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgcatggagctcatggaCacatccttggacaagttcta	9	10	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21205487	T	T	21205487	2	4	75	1	0	0	0	0	0	0	0	1	9330	477	17	4		4	MAP2K3	17	21205487	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3831	21205487	59989723	1064	83024											
MAP2K3	5606	broad.mit.edu	37	chr17	21208440	21208440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcctgggcatcaccatGgtactgtggggggccagggc	18	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21208440	T	T	21208440	3	4	75	1	0	0	0	0	1	0	0	0	9330	1362	47	2	808	2	MAP2K3	17	21208440	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2953	21208440	59986770	1065	83025											
SUPT6H	6830	broad.mit.edu	37	chr17	27013448	27013448	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacaggtaggtagggattaGaccacacctggtttaaggcc	13	8	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27013448	C	C	27013448	1	2	75	0	1	0	0	0	0	0	0	0	15518	957	33	4		4	SUPT6H	17	27013448	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5805008	27013448	54181762	1066	83026											
NF1	4763	broad.mit.edu	37	chr17	29562685	29562685	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcggcatttactctaccaActgctctggaacatgttttc	6	12	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29562685	G	G	29562685	2	3	75	1	0	0	0	0	0	0	0	1	10451	40	2	5		5	NF1	17	29562685	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2549237	29562685	51632525	1067	83027											
NF1	4763	broad.mit.edu	37	chr17	29679455	29679455	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagtttatctaaattatgtaGattttttttattatttaaaa	3	1	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29679455	A	A	29679455	1	1	75	0	1	0	0	0	0	0	0	0	10451	957	33	4		4	NF1	17	29679455	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	116770	29679455	51515755	1068	83028											
PSMD11	5717	broad.mit.edu	37	chr17	30773989	30773989	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgacattcaggaaaacgatGaagaggcagtgcaagtcaaa	12	6	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30773989	C	C	30773989	3	2	75	1	0	0	0	0	1	0	0	0	12800	1291	45	4	124	4	PSMD11	17	30773989	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1094534	30773989	50421221	1069	83029											
SPACA3	124912	broad.mit.edu	37	chr17	31324238	31324238	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccttagggctataggaatgGagggaggattgtttctgatg	16	4	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31324238	C	C	31324238	1	2	75	0	1	0	0	0	0	0	0	0	15087	1189	41	4		4	SPACA3	17	31324238	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	550249	31324238	49870972	1070	83030											
RASL10B	91608	broad.mit.edu	37	chr17	34068139	34068139	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgatcccgcgctggaacGtgtcgcacctggtacgcaag	14	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34068139	C	C	34068139	3	2	75	1	0	0	0	0	1	0	0	0	13188	1145	40	4	437	4	RASL10B	17	34068139	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2743901	34068139	47127071	1071	83031											
KRT26	353288	broad.mit.edu	37	chr17	38926662	38926662	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccagctcattttcatacCtgaaagattagtaaggcacc	8	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38926662	A	A	38926662	5	1	75	1	0	0	0	0	0	0	1	0	8534	695	24	2	906	2	KRT26	17	38926662	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4858523	38926662	42268548	1072	83032											
KRT39	390792	broad.mit.edu	37	chr17	39119845	39119845	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctacttttagggactTagcttgtgattactctattg	9	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39119845	C	C	39119845	1	2	75	0	1	0	0	0	0	0	0	0	8547	1769	61	5		5	KRT39	17	39119845	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	193183	39119845	42075365	1073	83033											
EFTUD2	9343	broad.mit.edu	37	chr17	42934454	42934454	+	Frame_Shift_Del	DEL	C	-	-													ccagcttacttcttattaggCgtttcagcaaagcacttgag					rs141842808		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42934454	-	-	42934454	7	5	75	1	0	1	0	1	0	0	0	0	5001	755	27	0	920	0	EFTUD2	17	42934454	Frame_Shift_Del	DEL	C	TCGA-17-Z046-01A-01W-0746-08	3814609	42934454	38260756	1074	83034											
ARHGAP27	201176	broad.mit.edu	37	chr17	43481819	43481819	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctcccctaccttctcctCtggagggctggcctgggctg	11	17	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43481819	T	T	43481819	3	4	75	1	0	0	0	0	1	0	0	0	878	922	32	4	1316	4	ARHGAP27	17	43481819	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	547365	43481819	37713391	1075	83035											
IMP5	162540	broad.mit.edu	37	chr17	43922651	43922651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgagccgggtcagtgacCaacagtgctcagacaccacc	11	14	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43922651	A	A	43922651	3	1	75	1	0	0	0	0	1	0	0	0	7791	595	21	2	381	2	IMP5	17	43922651	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	440832	43922651	37272559	1076	83036											
MAPT	4137	broad.mit.edu	37	chr17	44049296	44049296	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacctctgatgctaagagcActccaacagcggaaggtggg	12	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44049296	T	T	44049296	3	4	75	1	0	0	0	0	1	0	0	0	9389	159	6	5	211	5	MAPT	17	44049296	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	126645	44049296	37145914	1077	83037											
C17orf57	124989	broad.mit.edu	37	chr17	45405788	45405788	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctaaagatttcttctttcTtctttttaaaattagtttac	2	6	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45405788	C	C	45405788	1	2	75	0	1	0	0	0	0	0	0	0	1881	1624	56	5		5	C17orf57	17	45405788	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1356492	45405788	35789422	1078	83038											
SNF8	11267	broad.mit.edu	37	chr17	47008999	47008999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctggactgttccaaagttGcataccagcacttgccgcgc	9	13	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47008999	A	A	47008999	1	1	75	0	1	0	0	0	0	0	0	0	14960	1334	46	4		4	SNF8	17	47008999	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1603211	47008999	34186211	1079	83039											
IGF2BP1	10642	broad.mit.edu	37	chr17	47114660	47114660	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaattctctattgaaAggacgtctaactgctcacta	6	8	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47114660	C	C	47114660	1	2	75	0	1	0	0	0	0	0	0	0	7643	87	3	5		5	IGF2BP1	17	47114660	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	105661	47114660	34080550	1080	83040											
SAMD14	201191	broad.mit.edu	37	chr17	48193422	48193422	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggccgatggtggggctggCgggctcaggaggactggcgt	22	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48193422	T	T	48193422	3	4	75	1	0	0	0	0	1	0	0	0	13930	768	27	4	833	4	SAMD14	17	48193422	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1078762	48193422	33001788	1081	83041											
OR4D2	124538	broad.mit.edu	37	chr17	56246951	56246951	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccctgagccctgaaagGgaaagtagtgacttcatgta	12	9	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56246951	T	T	56246951	1	4	75	0	1	0	0	0	0	0	0	0	11150	1247	43	2		2	OR4D2	17	56246951	5'Flank	SNP	G	TCGA-17-Z046-01A-01W-0746-08	8053529	56246951	24948259	1082	83042											
PPM1D	8493	broad.mit.edu	37	chr17	58711293	58711293	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggacctgttagaaggagcAcagttattgaccagattcct	10	8	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58711293	T	T	58711293	3	4	75	1	0	0	0	0	1	0	0	0	12438	159	6	5	791	5	PPM1D	17	58711293	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	2464342	58711293	22483917	1083	83043											
BRIP1	83990	broad.mit.edu	37	chr17	59885755	59885755	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattatcactaaaatgtacaTataaaacacatactgagtaa	4	6	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59885755	C	C	59885755	1	2	75	0	1	0	0	0	0	0	0	0	1523	1421	49	5		5	BRIP1	17	59885755	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1174462	59885755	21309455	1084	83044											
APOH	350	broad.mit.edu	37	chr17	64219805	64219805	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccagctgatcaccttgccCacagacttacgagcacagac	7	15	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64219805	T	T	64219805	1	4	75	0	1	0	0	0	0	0	0	0	806	609	21	4		4	APOH	17	64219805	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4334050	64219805	16975405	1085	83045											
CACNG5	27091	broad.mit.edu	37	chr17	64880682	64880682	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatctccagcatcaacgaTgagatgctcaacaggaccaa	7	12	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64880682	C	C	64880682	2	2	75	1	0	0	0	0	0	0	0	1	2586	1461	51	5		5	CACNG5	17	64880682	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	660877	64880682	16314528	1086	83046											
ABCA9	10350	broad.mit.edu	37	chr17	67031696	67031696	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagacactgtttcatgcaaaTactacaaagagaacaaaaga	6	7	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67031696	A	A	67031696	1	1	75	0	1	0	0	0	0	0	0	0	39	1421	49	5		5	ABCA9	17	67031696	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2151014	67031696	14163514	1087	83047											
ABCA10	10349	broad.mit.edu	37	chr17	67150239	67150239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagtggccattaagctaCaatattttttgaatacgcaa	6	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67150239	A	A	67150239	1	1	75	0	1	0	0	0	0	0	0	0	29	493	17	3		3	ABCA10	17	67150239	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	118543	67150239	14044971	1088	83048											
KIF19	124602	broad.mit.edu	37	chr17	72339179	72339179	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctgtgggaaaacctaCaccatgctgggcacagacca	11	13	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72339179	A	A	72339179	4	1	75	1	0	0	0	0	0	1	0	0	8352	489	17	3	354	3	KIF19	17	72339179	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5188940	72339179	8856031	1089	83049											
OTOP2	92736	broad.mit.edu	37	chr17	72929412	72929412	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcccagcaaaacccacagAaatgacccacaggcatccat	7	16	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72929412	C	C	72929412	1	2	75	0	1	0	0	0	0	0	0	0	11400	261	9	5		5	OTOP2	17	72929412	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	590233	72929412	8265798	1090	83050											
NUP85	79902	broad.mit.edu	37	chr17	73229200	73229200	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttttctgatttggatcTcattgacaacctggggccag	10	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73229200	A	A	73229200	3	1	75	1	0	0	0	0	1	0	0	0	10865	1551	54	5	1624	5	NUP85	17	73229200	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	299788	73229200	7966010	1091	83051											
SAP30BP	29115	broad.mit.edu	37	chr17	73695769	73695769	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatagtgtttatccctAcctgataacattttatgtgc	5	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73695769	T	T	73695769	1	4	75	0	1	0	0	0	0	0	0	0	13946	406	14	5		5	SAP30BP	17	73695769	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	466569	73695769	7499441	1092	83052											
SRP68	6730	broad.mit.edu	37	chr17	74057417	74057417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctaccaactaccataaCtggcatgttctaaggttgaa	6	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74057417	A	A	74057417	1	1	75	0	1	0	0	0	0	0	0	0	15274	580	20	3		3	SRP68	17	74057417	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	361648	74057417	7137793	1093	83053											
UBE2O	63893	broad.mit.edu	37	chr17	74393823	74393823	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggctacacgcctgtggccCccggcccaagttgccatagt	11	16	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74393823	T	T	74393823	1	4	75	0	1	0	0	0	0	0	0	0	16994	638	22	4		4	UBE2O	17	74393823	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	336406	74393823	6801387	1094	83054											
MGAT5B	146664	broad.mit.edu	37	chr17	74928824	74928824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaggccagcaacatggcCgtggtgtacggcaaggaggc	17	10	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74928824	A	A	74928824	2	1	75	1	0	0	0	0	0	0	0	1	9642	639	23	1		1	MGAT5B	17	74928824	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	535001	74928824	6266386	1095	83055											
ENPP7	339221	broad.mit.edu	37	chr17	77708995	77708995	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtgatggcgtggttcacaGaggaggacctggatctggtc	16	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77708995	T	T	77708995	4	4	75	1	0	0	0	0	0	1	0	0	5177	943	33	3	563	3	ENPP7	17	77708995	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2780171	77708995	3486215	1096	83056											
COLEC12	81035	broad.mit.edu	37	chr18	334908	334908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctccccaacggtgccCtgaagtccctggaagccagg	12	16	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	334908	A	A	334908	3	1	75	1	0	0	0	0	1	0	0	0	3744	680	24	2	598	2	COLEC12	18	334908	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08		334908	77742340	1097	83057											
YES1	7525	broad.mit.edu	37	chr18	751704	751704	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaatattcatgacacttaCgtattgttaattatttgaaa	4	5	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	751704	A	A	751704	5	1	75	1	0	0	0	0	0	0	1	0	17601	550	19	3	1299	3	YES1	18	751704	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	416796	751704	77325544	1098	83058											
SMCHD1	23347	broad.mit.edu	37	chr18	2666802	2666802	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagatagaatttgtatattCacaattataagttcattgag	6	3	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2666802	G	G	2666802	1	3	75	0	1	0	0	0	0	0	0	0	14902	841	29	4		4	SMCHD1	18	2666802	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1915098	2666802	75410446	1099	83059											
SMCHD1	23347	broad.mit.edu	37	chr18	2784545	2784545	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagaataaagctcctcCaatggataaacttcggggaa	8	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2784545	T	T	2784545	3	4	75	1	0	0	0	0	1	0	0	0	14902	594	21	4	5823	4	SMCHD1	18	2784545	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	117743	2784545	75292703	1100	83060											
DLGAP1	9229	broad.mit.edu	37	chr18	3978383	3978383	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcgtgggatctcgccttGgatgatgagtgatgcagttt	13	6	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3978383	A	A	3978383	1	1	75	0	1	0	0	0	0	0	0	0	4599	1363	47	4		4	DLGAP1	18	3978383	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1193838	3978383	74098865	1101	83061											
ZFP161	7541	broad.mit.edu	37	chr18	5290955	5290955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatggcactgggggtaaCctgcttcctttcactgtgca	12	11	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5290955	A	A	5290955	3	1	75	1	0	0	0	0	1	0	0	0	17766	507	18	3	101	3	ZFP161	18	5290955	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1312572	5290955	72786293	1102	83062											
EPB41L3	23136	broad.mit.edu	37	chr18	5443994	5443994	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttagtggtcgtgggaaggcTtcccttactgtggtccttcc	13	10	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5443994	G	G	5443994	1	3	75	0	1	0	0	0	0	0	0	0	5196	1624	56	5		5	EPB41L3	18	5443994	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	153039	5443994	72633254	1103	83063											
LAMA1	284217	broad.mit.edu	37	chr18	7002232	7002232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcagccctgggcagccCagcatgccagctgcccctgt	13	16	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7002232	A	A	7002232	1	1	75	0	1	0	0	0	0	0	0	0	8677	609	21	2		2	LAMA1	18	7002232	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1558238	7002232	71075016	1104	83064											
LRRC30	339291	broad.mit.edu	37	chr18	7231199	7231199	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaagaggatgctgttcacGgggaggagacagaagttttc	14	8	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7231199	A	A	7231199	2	1	75	1	0	0	0	0	0	0	0	1	9072	1103	39	4		4	LRRC30	18	7231199	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	228967	7231199	70846049	1105	83065											
KIAA0802	23255	broad.mit.edu	37	chr18	8829043	8829043	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcacctgacgctcatcaCctgagggagttctgcccggt	12	13	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8829043	T	T	8829043	1	4	75	0	1	0	0	0	0	0	0	0	8264	522	18	4		4	KIAA0802	18	8829043	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1597844	8829043	69248205	1106	83066											
MC5R	4161	broad.mit.edu	37	chr18	13825938	13825938	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggagaacatcttggtcatAggggccatagtgaagaacaa	12	6	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13825938	T	T	13825938	2	4	75	1	0	0	0	0	0	0	0	1	9460	410	15	5		5	MC5R	18	13825938	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	4996895	13825938	64251310	1107	83067											
AQP4	361	broad.mit.edu	37	chr18	24436373	24436373	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttctttaaaacgacgtttGaattcaacatctggacagaa	7	8	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24436373	A	A	24436373	2	1	75	1	0	0	0	0	0	0	0	1	830	1281	45	4		4	AQP4	18	24436373	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	10610435	24436373	53640875	1108	83068											
SLC14A2	8170	broad.mit.edu	37	chr18	43212265	43212265	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcaccaggagggaggggcCcagtaacaccaccaacttca	12	13	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43212265	T	T	43212265	1	4	75	0	1	0	0	0	0	0	0	0	14510	638	22	4		4	SLC14A2	18	43212265	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	18775892	43212265	34864983	1109	83069											
TCEB3B	51224	broad.mit.edu	37	chr18	44561359	44561359	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagcgctgtcgggaagcgcTctcctcagggtcctgtgggc	16	12	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44561359	A	A	44561359	3	1	75	1	0	0	0	0	1	0	0	0	15804	1551	54	5	1988	5	TCEB3B	18	44561359	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1349094	44561359	33515889	1110	83070											
MAPK4	5596	broad.mit.edu	37	chr18	48248352	48248352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcatcctggagaccatcCctgtaatccgggaggaagac	10	12	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48248352	A	A	48248352	3	1	75	1	0	0	0	0	1	0	0	0	9372	623	22	2	746	2	MAPK4	18	48248352	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3686993	48248352	29828896	1111	83071											
DCC	1630	broad.mit.edu	37	chr18	50451836	50451836	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattgattcctatgtttaTtagtgtgaaattgcaaagtc	8	4	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50451836	C	C	50451836	1	2	75	0	1	0	0	0	0	0	0	0	4315	1508	52	5		5	DCC	18	50451836	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	2203484	50451836	27625412	1112	83072											
LMAN1	3998	broad.mit.edu	37	chr18	57022703	57022703	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagtggtatatgcatttaTgcacattttctaagttaaag	8	5	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57022703	C	C	57022703	1	2	75	0	1	0	0	0	0	0	0	0	8910	1479	51	5		5	LMAN1	18	57022703	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	6570867	57022703	21054545	1113	83073											
CCBE1	147372	broad.mit.edu	37	chr18	57105361	57105361	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggagaccctctgggcccAggcgctcctctctcccccta	9	19	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57105361	T	T	57105361	2	4	75	1	0	0	0	0	0	0	0	1	2757	175	7	5		5	CCBE1	18	57105361	Silent	SNP	A	TCGA-17-Z046-01A-01W-0746-08	82658	57105361	20971887	1114	83074											
ZCCHC2	54877	broad.mit.edu	37	chr18	60228025	60228025	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttctgtttccttttctcActttttttgcctccttttgg	4	10	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60228025	T	T	60228025	1	4	75	0	1	0	0	0	0	0	0	0	17713	174	6	5		5	ZCCHC2	18	60228025	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	3122664	60228025	17849223	1115	83075											
SERPINB11	89778	broad.mit.edu	37	chr18	61387166	61387166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtcttaaaaaagaaatgGctctaaatttctcatgactc	5	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61387166	T	T	61387166	1	4	75	0	1	0	0	0	0	0	0	0	14211	1218	42	3		3	SERPINB11	18	61387166	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1159141	61387166	16690082	1116	83076											
NETO1	81832	broad.mit.edu	37	chr18	70451089	70451089	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catacacagccacaaaattcCtcttgcactcatttgaattc	3	13	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70451089	T	T	70451089	3	4	75	1	0	0	0	0	1	0	0	0	10434	681	24	4	925	4	NETO1	18	70451089	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	9063923	70451089	7626159	1117	83077											
NETO1	81832	broad.mit.edu	37	chr18	70534577	70534577	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactaattccatttagagaCgggaagacttccagtggcgg	11	10	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70534577	A	A	70534577	1	1	75	0	1	0	0	0	0	0	0	0	10434	551	19	3		3	NETO1	18	70534577	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	83488	70534577	7542671	1118	83078											
HCN2	610	broad.mit.edu	37	chr19	613921	613921	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctactgccgcctctattCgctgagcgtggacaacttca	8	15	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	613921	A	A	613921	4	1	75	1	0	0	0	0	0	1	0	0	7063	893	31	3	1921	3	HCN2	19	613921	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08		613921	58515062	1119	83079											
SLC25A41	284427	broad.mit.edu	37	chr19	6432010	6432010	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtcctcaccccacgttctCcccagtggctccagcgctgg	9	19	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6432010	A	A	6432010	1	1	75	0	1	0	0	0	0	0	0	0	14620	870	30	3		3	SLC25A41	19	6432010	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5818089	6432010	52696973	1120	83080											
VAV1	7409	broad.mit.edu	37	chr19	6821908	6821908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgcacagctcactggaGcaccgtcctgggggtggagg	17	12	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6821908	T	T	6821908	1	4	75	0	1	0	0	0	0	0	0	0	17258	986	34	3		3	VAV1	19	6821908	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	389898	6821908	52307075	1121	83081											
C19orf59	199675	broad.mit.edu	37	chr19	7743518	7743518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtctcgccttctatggGggttatttgtcaccaatgcc	10	10	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7743518	T	T	7743518	1	4	75	0	1	0	0	0	0	0	0	0	1959	1247	43	2		2	C19orf59	19	7743518	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	921610	7743518	51385465	1122	83082											
FBN3	84467	broad.mit.edu	37	chr19	8191736	8191736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtggggacagccccccaCcaggtcctgagctgcaggag	14	14	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8191736	A	A	8191736	1	1	75	0	1	0	0	0	0	0	0	0	5761	522	18	3		3	FBN3	19	8191736	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	448218	8191736	50937247	1123	83083											
ZNF560	147741	broad.mit.edu	37	chr19	9583779	9583779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtatttctttcttgcaaCacaagaacagactaacacag	6	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9583779	A	A	9583779	1	1	75	0	1	0	0	0	0	0	0	0	18118	493	17	3		3	ZNF560	19	9583779	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1392043	9583779	49545204	1124	83084											
MAST1	22983	broad.mit.edu	37	chr19	12951786	12951786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagacctgacaggatttgCcccctctttctctcataggc	9	13	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12951786	A	A	12951786	1	1	75	0	1	0	0	0	0	0	0	0	9416	754	26	3		3	MAST1	19	12951786	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3368007	12951786	46177197	1125	83085											
CYP4F8	11283	broad.mit.edu	37	chr19	15733011	15733011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcctggccccagccctGctcccttctctggccaggcc	10	20	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15733011	T	T	15733011	1	4	75	0	1	0	0	0	0	0	0	0	4224	1334	46	3		3	CYP4F8	19	15733011	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2781225	15733011	43395972	1126	83086											
CYP4F2	8529	broad.mit.edu	37	chr19	16006249	16006249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtactgcagggcccacacAggagcttggggatagcggaa	16	9	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16006249	T	T	16006249	1	4	75	0	1	0	0	0	0	0	0	0	4221	203	7	5		5	CYP4F2	19	16006249	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	273238	16006249	43122734	1127	83087											
GTPBP3	84705	broad.mit.edu	37	chr19	17449507	17449507	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcaggcagctggacggagAgctgggccacctctgccgtg	15	14	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17449507	T	T	17449507	3	4	75	1	0	0	0	0	1	0	0	0	6946	304	11	5	562	5	GTPBP3	19	17449507	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1443258	17449507	41679476	1128	83088											
PLVAP	83483	broad.mit.edu	37	chr19	17471480	17471480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccctgcccctgggctagGgatgggctggcagcccaggg	17	14	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17471480	T	T	17471480	1	4	75	0	1	0	0	0	0	0	0	0	12211	1247	43	2		2	PLVAP	19	17471480	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	21973	17471480	41657503	1129	83089											
SFRS14	10147	broad.mit.edu	37	chr19	19105995	19105995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttccgagggagcccaggCcatggccctccttccagccc	10	19	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19105995	A	A	19105995	3	1	75	1	0	0	0	0	1	0	0	0	14283	739	26	3	170	3	SFRS14	19	19105995	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1634515	19105995	40022988	1130	83090											
SFRS14	10147	broad.mit.edu	37	chr19	19115479	19115479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcacagaggaaatacattGggtaaccagatggaatctct	12	7	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19115479	T	T	19115479	1	4	75	0	1	0	0	0	0	0	0	0	14283	1363	47	2		2	SFRS14	19	19115479	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	9484	19115479	40013504	1131	83091											
CILP2	148113	broad.mit.edu	37	chr19	19655529	19655529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagatccgggagcggcgCctgttcaatctggacgtgcc	16	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19655529	A	A	19655529	2	1	75	1	0	0	0	0	0	0	0	1	3461	726	26	3		3	CILP2	19	19655529	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	540050	19655529	39473454	1132	83092											
ZNF493	284443	broad.mit.edu	37	chr19	21606372	21606372	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatggcaaaacttttaaccAatcttcaacccttactggac	4	11	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21606372	C	C	21606372	3	2	75	1	0	0	0	0	1	0	0	0	18071	130	5	5	988	5	ZNF493	19	21606372	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	1950843	21606372	37522611	1133	83093											
ZNF208	7757	broad.mit.edu	37	chr19	22171470	22171470	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccttcttccaaatatactCttttgtctttgtctttattc	2	12	4	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22171470	A	A	22171470	1	1	75	0	1	0	0	0	0	0	0	0	17892	928	32	3		3	ZNF208	19	22171470	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	565098	22171470	36957513	1134	83094											
ZNF257	113835	broad.mit.edu	37	chr19	22271935	22271935	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagagaaaccctacaaatgTgaagagtgtggcaaagcctt	12	7	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22271935	C	C	22271935	2	2	75	1	0	0	0	0	0	0	0	1	17926	1702	59	5		5	ZNF257	19	22271935	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	100465	22271935	36857048	1135	83095											
ZNF492	57615	broad.mit.edu	37	chr19	22847468	22847468	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacataagagaattcattctGgagagaaaccctacaagtgt	8	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22847468	T	T	22847468	4	4	75	1	0	0	0	0	0	1	0	0	18070	1349	47	2	1007	2	ZNF492	19	22847468	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	575533	22847468	36281515	1136	83096											
ZNF536	9745	broad.mit.edu	37	chr19	31039161	31039161	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggccacgggcatgtcttcgGaggtcccctcagatgctctg	13	13	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039161	T	T	31039161	4	4	75	1	0	0	0	0	0	1	0	0	18101	1175	41	3	2645	3	ZNF536	19	31039161	Nonsense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	8191693	31039161	28089822	1137	83097											
TSHZ3	57616	broad.mit.edu	37	chr19	31768797	31768797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcttgggcggggaaagCttcccatccggctccttcat	12	15	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768797	A	A	31768797	3	1	75	1	0	0	0	0	1	0	0	0	16750	796	28	3	1347	3	TSHZ3	19	31768797	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	729636	31768797	27360186	1138	83098											
UBA2	10054	broad.mit.edu	37	chr19	34945492	34945492	+	Intron	DEL	C	-	-													ctgtttgcatttttatgcaaCcccccttaaaaaaatcatta							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34945492	-	-	34945492	6	5	75	0	1	1	0	1	0	0	0	0	16954	522	18	0		0	UBA2	19	34945492	Intron	DEL	C	TCGA-17-Z046-01A-01W-0746-08	3176695	34945492	24183491	1139	83099											
HPN	3249	broad.mit.edu	37	chr19	35556769	35556769	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacctccctctcccctccCagggcgacagcggtggtccc	10	20	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35556769	T	T	35556769	1	4	75	0	1	0	0	0	0	0	0	0	7403	609	21	4		4	HPN	19	35556769	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	611277	35556769	23572214	1140	83100											
CD22	933	broad.mit.edu	37	chr19	35836699	35836699	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctctgtcccgcctgccctCtttgtgccaggcccatgcca	9	18	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35836699	T	T	35836699	1	4	75	0	1	0	0	0	0	0	0	0	3015	928	32	4		4	CD22	19	35836699	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	279930	35836699	23292284	1141	83101											
WDR62	284403	broad.mit.edu	37	chr19	36564410	36564410	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtcagagctcttccacAgctcctacgtttggaacgtg	11	11	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36564410	T	T	36564410	3	4	75	1	0	0	0	0	1	0	0	0	17440	188	7	5	1244	5	WDR62	19	36564410	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	727711	36564410	22564573	1142	83102											
ZNF793	390927	broad.mit.edu	37	chr19	38014230	38014230	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatttacaaagggaatttgCaatttccaagacaggcctag	8	7	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38014230	T	T	38014230	1	4	75	0	1	0	0	0	0	0	0	0	18294	725	25	4		4	ZNF793	19	38014230	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1449820	38014230	21114753	1143	83103											
FCGBP	8857	broad.mit.edu	37	chr19	40430352	40430352	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtaggcgcgcacagtgaCgaggcccacgtaggagacgc	16	12	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40430352	T	T	40430352	3	4	75	1	0	0	0	0	1	0	0	0	5835	536	19	4	14762	4	FCGBP	19	40430352	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2416122	40430352	18698631	1144	83104											
ZNF780B	163131	broad.mit.edu	37	chr19	40541968	40541968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcatgaatactttgatgCtgagtaaggtttgagctacg	11	7	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40541968	A	A	40541968	3	1	75	1	0	0	0	0	1	0	0	0	18282	796	28	3	1707	3	ZNF780B	19	40541968	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	111616	40541968	18587015	1145	83105											
ATP1A3	478	broad.mit.edu	37	chr19	42474434	42474434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgtcgctttcggcagcCtcgtacgccagtgagatggc	13	11	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42474434	A	A	42474434	3	1	75	1	0	0	0	0	1	0	0	0	1134	680	24	2	620	2	ATP1A3	19	42474434	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1932466	42474434	16654549	1146	83106											
ATP1A3	478	broad.mit.edu	37	chr19	42480469	42480469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacccaggggtccagacccCcagcccctcctccctcagac	8	21	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42480469	A	A	42480469	1	1	75	0	1	0	0	0	0	0	0	0	1134	638	22	2		2	ATP1A3	19	42480469	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	6035	42480469	16648514	1147	83107											
PSG8	440533	broad.mit.edu	37	chr19	43305345	43305345	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccagtactctagtcatgAtgctgacagtggccccaact	9	13	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43305345	T	T	43305345	1	4	75	0	1	0	0	0	0	0	0	0	12767	348	12	5		5	PSG8	19	43305345	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	824876	43305345	15823638	1148	83108											
PSG6	5675	broad.mit.edu	37	chr19	43448231	43448231	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggaattggaggaactaGtagaattcagggtaatgtcc	13	4	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43448231	T	T	43448231	1	4	75	0	1	0	0	0	0	0	0	0	12765	1044	36	3		3	PSG6	19	43448231	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	142886	43448231	15680752	1149	83109											
PSG4	5672	broad.mit.edu	37	chr19	43709715	43709715	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgcttgtgtgttctcctCtgtggagataagcctaggat	12	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43709715	A	A	43709715	1	1	75	0	1	0	0	0	0	0	0	0	12763	928	32	3		3	PSG4	19	43709715	5'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	261484	43709715	15419268	1150	83110											
STRN4	29888	broad.mit.edu	37	chr19	47227989	47227989	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgttggcaagaggtggacGcgacgtgtgtgtgcgtggag	20	5	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47227989	A	A	47227989	1	1	75	0	1	0	0	0	0	0	0	0	15449	1102	38	4		4	STRN4	19	47227989	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3518274	47227989	11900994	1151	83111											
CGB	1082	broad.mit.edu	37	chr19	49551813	49551813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagaggacctgagatacCccaacatttcagatccccac	7	16	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49551813	A	A	49551813	1	1	75	0	1	0	0	0	0	0	0	0	3326	638	22	2		2	CGB	19	49551813	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2323824	49551813	9577170	1152	83112											
TEAD2	8463	broad.mit.edu	37	chr19	49844578	49844578	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagccagttttggggtcccCcttcagtccctgaccaggcg	12	14	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49844578	A	A	49844578	1	1	75	0	1	0	0	0	0	0	0	0	15861	638	22	2		2	TEAD2	19	49844578	3'UTR	SNP	C	TCGA-17-Z046-01A-01W-0746-08	292765	49844578	9284405	1153	83113											
CCDC155	147872	broad.mit.edu	37	chr19	49902741	49902741	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcagcagcatctggtggctGagatggagactctgcaggag	16	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49902741	C	C	49902741	3	2	75	1	0	0	0	0	1	0	0	0	2815	1291	45	4	805	4	CCDC155	19	49902741	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	58163	49902741	9226242	1154	83114											
C19orf76	199800	broad.mit.edu	37	chr19	50193198	50193198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggtggcagcagggacagGgcgggagggagaccgtaaag	21	8	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50193198	T	T	50193198	1	4	75	0	1	0	0	0	0	0	0	0	1970	1247	43	2		2	C19orf76	19	50193198	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	290457	50193198	8935785	1155	83115											
KLK13	26085	broad.mit.edu	37	chr19	51561694	51561694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgtatcttataaagattGgttcccctaaggctggaaac	8	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51561694	T	T	51561694	1	4	75	0	1	0	0	0	0	0	0	0	8472	1363	47	2		2	KLK13	19	51561694	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1368496	51561694	7567289	1156	83116											
CD33	945	broad.mit.edu	37	chr19	51728683	51728683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagctagatcaagaagtaCaggaggagactcagggcaga	13	7	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51728683	A	A	51728683	3	1	75	1	0	0	0	0	1	0	0	0	3035	479	17	3	253	3	CD33	19	51728683	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	166989	51728683	7400300	1157	83117											
CD33	945	broad.mit.edu	37	chr19	51742866	51742866	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatggatgaggagctgcatTatgcttccctcaactttcat	9	9	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51742866	A	A	51742866	3	1	75	1	0	0	0	0	1	0	0	0	3035	1754	61	5	1057	5	CD33	19	51742866	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	14183	51742866	7386117	1158	83118											
SIGLEC6	946	broad.mit.edu	37	chr19	52030927	52030927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtgttaatgaagaaatGcctcagggtccttacttagg	11	7	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52030927	T	T	52030927	1	4	75	0	1	0	0	0	0	0	0	0	14425	1334	46	3		3	SIGLEC6	19	52030927	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	288061	52030927	7098056	1159	83119											
FPR1	2357	broad.mit.edu	37	chr19	52249355	52249355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaagacatagagcatgGggttgaggcagctgttgaag	15	6	0	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52249355	A	A	52249355	3	1	75	1	0	0	0	0	1	0	0	0	6098	1232	43	4	163	4	FPR1	19	52249355	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	218428	52249355	6879628	1160	83120											
FPR1	2357	broad.mit.edu	37	chr19	52250065	52250065	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggttcaggtaactgatGgtggtgactgtgtgtgtcat	15	6	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52250065	T	T	52250065	2	4	75	1	0	0	0	0	0	0	0	1	6098	1335	47	2		2	FPR1	19	52250065	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	710	52250065	6878918	1161	83121											
ZNF480	147657	broad.mit.edu	37	chr19	52825491	52825491	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttcagtcataagtcatctCtagcaaatcattggagaatt	7	8	5	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825491	T	T	52825491	2	4	75	1	0	0	0	0	0	0	0	1	18062	912	32	4		4	ZNF480	19	52825491	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	575426	52825491	6303492	1162	83122											
ZNF528	84436	broad.mit.edu	37	chr19	52919465	52919465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagttttcagaccttactGcccattttctaatccatagt	6	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52919465	T	T	52919465	3	4	75	1	0	0	0	0	1	0	0	0	18096	1319	46	3	1374	3	ZNF528	19	52919465	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	93974	52919465	6209518	1163	83123											
ZNF813	126017	broad.mit.edu	37	chr19	53999379	53999379	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgaaaatgtcaccactatCtggagtgttggaaatgtttt	10	6	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53999379	A	A	53999379	1	1	75	0	1	0	0	0	0	0	0	0	18304	928	32	3		3	ZNF813	19	53999379	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1079914	53999379	5129604	1164	83124											
NLRP12	91662	broad.mit.edu	37	chr19	54310875	54310875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggtgcacagggccgctGccagatgttcactgtaggcg	15	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54310875	T	T	54310875	3	4	75	1	0	0	0	0	1	0	0	0	10569	1319	46	3	1192	3	NLRP12	19	54310875	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	311496	54310875	4818108	1165	83125											
NLRP12	91662	broad.mit.edu	37	chr19	54327144	54327144	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccgccacctccttacccctCaccaggtcctctctctgtcc	4	23	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54327144	T	T	54327144	2	4	75	1	0	0	0	0	0	0	0	1	10569	813	29	4		4	NLRP12	19	54327144	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	16269	54327144	4801839	1166	83126											
PRPF31	26121	broad.mit.edu	37	chr19	54628052	54628052	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accggtgagcccactgcgtcAtggcccctcccccggccccc	10	22	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54628052	T	T	54628052	1	4	75	0	1	0	0	0	0	0	0	0	12672	232	8	5		5	PRPF31	19	54628052	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	300908	54628052	4500931	1167	83127											
LILRA6	79168	broad.mit.edu	37	chr19	54744828	54744828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccagggtgaagttggcCtgggagagcccagcctgggg	20	10	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54744828	A	A	54744828	3	1	75	1	0	0	0	0	1	0	0	0	8861	680	24	2	627	2	LILRA6	19	54744828	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	116776	54744828	4384155	1168	83128											
LILRB2	10288	broad.mit.edu	37	chr19	54779944	54779944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccctgctcccagatgGggctactgagatgcagggag	14	13	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54779944	T	T	54779944	1	4	75	0	1	0	0	0	0	0	0	0	8863	1247	43	2		2	LILRB2	19	54779944	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	35116	54779944	4349039	1169	83129											
LILRA2	11027	broad.mit.edu	37	chr19	55086954	55086954	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggggccagtacagatgctAcagtgcacacaacctctcct	10	14	1	1	rs141927155	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55086954	G	G	55086954	3	3	75	1	0	0	0	0	1	0	0	0	8857	391	14	5	905	5	LILRA2	19	55086954	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	307010	55086954	4042029	1170	83130											
KIR3DL1	3811	broad.mit.edu	37	chr19	55359273	55359273	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgaggtaggtgctcctccGcccagcctcgtggctagtct	13	14	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55359273	A	A	55359273	1	1	75	0	1	0	0	0	0	0	0	0	8391	1102	38	4		4	KIR3DL1	19	55359273	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	272319	55359273	3769710	1171	83131											
NLRP2	55655	broad.mit.edu	37	chr19	55501456	55501456	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcccttgaagtcaaccaGtccctgacgtgcgtaaacct	9	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55501456	A	A	55501456	2	1	75	1	0	0	0	0	0	0	0	1	10572	1020	36	4		4	NLRP2	19	55501456	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	142183	55501456	3627527	1172	83132											
BRSK1	84446	broad.mit.edu	37	chr19	55800991	55800991	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacagctactccatctggtGagtgggcagcttgaggggga	15	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55800991	T	T	55800991	1	4	75	0	1	0	0	0	0	0	0	0	1532	1305	45	3		3	BRSK1	19	55800991	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	299535	55800991	3327992	1173	83133											
ZNF582	147948	broad.mit.edu	37	chr19	56901841	56901841	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcttcttgggagaagacTatggccacatccctgaacaa	8	11	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56901841	C	C	56901841	3	2	75	1	0	0	0	0	1	0	0	0	18141	1512	53	5	1526	5	ZNF582	19	56901841	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1100850	56901841	2227142	1174	83134											
ZNF470	388566	broad.mit.edu	37	chr19	57081648	57081648	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacttctttttctccccaGctctacaatcccagagtaaa	3	14	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57081648	T	T	57081648	5	4	75	1	0	0	0	0	0	0	1	0	18056	985	34	3		3	ZNF470	19	57081648	Splice_Site	SNP	G	TCGA-17-Z046-01A-01W-0746-08	179807	57081648	2047335	1175	83135											
PEG3	5178	broad.mit.edu	37	chr19	57326475	57326475	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccacaaagcccaggccaCagtcctcacattcatagatt	6	14	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57326475	T	T	57326475	3	4	75	1	0	0	0	0	1	0	0	0	11814	478	17	4	1435	4	PEG3	19	57326475	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	244827	57326475	1802508	1176	83136											
PEG3	5178	broad.mit.edu	37	chr19	57327680	57327680	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctctgccttcaaagaggttCtttcgagaatgaattttctg	8	9	4	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57327680	A	A	57327680	3	1	75	1	0	0	0	0	1	0	0	0	11814	912	32	3	2640	3	PEG3	19	57327680	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1205	57327680	1801303	1177	83137											
PLCB4	5332	broad.mit.edu	37	chr20	9368227	9368227	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actttaaaaataattacacaGacttttccaaactctgtgaa	3	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9368227	T	T	9368227	1	4	75	0	1	0	0	0	0	0	0	0	12125	957	33	3		3	PLCB4	20	9368227	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08		9368227	53657293	1178	83138											
DTD1	92675	broad.mit.edu	37	chr20	18576585	18576585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctggtgacatttttggGgtatggagtgtgttgggggg	20	2	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18576585	T	T	18576585	1	4	75	0	1	0	0	0	0	0	0	0	4826	1247	43	2		2	DTD1	20	18576585	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	9208358	18576585	44448935	1179	83139											
XKR7	343702	broad.mit.edu	37	chr20	30584429	30584429	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagggcgccgtggcacaggtGctgtggcacctgttcagcat	15	11	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30584429	C	C	30584429	2	2	75	1	0	0	0	0	0	0	0	1	17563	1306	46	4		4	XKR7	20	30584429	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	12007844	30584429	32441091	1180	83140											
C20orf71	128861	broad.mit.edu	37	chr20	31805231	31805231	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatgctgggggctaattcTgatgtcatctttctgcagaa	11	8	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31805231	A	A	31805231	1	1	75	0	1	0	0	0	0	0	0	0	2139	1595	55	5		5	C20orf71	20	31805231	5'UTR	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1220802	31805231	31220289	1181	83141											
CEP250	11190	broad.mit.edu	37	chr20	34061295	34061295	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcaaagccttgagacagCggctgcagaagctcactggg	15	10	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34061295	T	T	34061295	3	4	75	1	0	0	0	0	1	0	0	0	3282	759	27	4	1344	4	CEP250	20	34061295	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2256064	34061295	28964225	1182	83142											
RBL1	5933	broad.mit.edu	37	chr20	35668595	35668595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagttcgaacttccttgaCtcttgggtgcattagaggag	12	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35668595	A	A	35668595	3	1	75	1	0	0	0	0	1	0	0	0	13217	565	20	3	1387	3	RBL1	20	35668595	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1607300	35668595	27356925	1183	83143											
C20orf132	140699	broad.mit.edu	37	chr20	35796647	35796647	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcttttcaagttcaccCtgaatttgtgggaaaatgat	8	7	3	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35796647	A	A	35796647	5	1	75	1	0	0	0	0	0	0	1	0	2108	695	24	2	2695	2	C20orf132	20	35796647	Splice_Site	SNP	C	TCGA-17-Z046-01A-01W-0746-08	128052	35796647	27228873	1184	83144											
RALGAPB	57148	broad.mit.edu	37	chr20	37179585	37179585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatctgtagcatttgcagGttctgagtgagtttttgtga	12	4	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37179585	T	T	37179585	1	4	75	0	1	0	0	0	0	0	0	0	13123	1276	44	3		3	RALGAPB	20	37179585	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1382938	37179585	25845935	1185	83145											
PTPRT	11122	broad.mit.edu	37	chr20	41101012	41101012	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggggcgcaggcctcgcagGgtgtagtgggaggaggtctg	21	7	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41101012	C	C	41101012	2	2	75	1	0	0	0	0	0	0	0	1	12920	1219	43	4		4	PTPRT	20	41101012	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3921427	41101012	21924508	1186	83146											
MYBL2	4605	broad.mit.edu	37	chr20	42333762	42333762	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagagcagacgttttgggGgagaggctcaaggatctctc	14	8	3	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42333762	T	T	42333762	1	4	75	0	1	0	0	0	0	0	0	0	10104	1247	43	2		2	MYBL2	20	42333762	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1232750	42333762	20691758	1187	83147											
RIMS4	140730	broad.mit.edu	37	chr20	43384785	43384786	+	Frame_Shift_Del	DEL	TC	-	-													cattccagcactaagatcgtTctccgcagggccccacggtg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43384786	-	-	43384785	7	5	75	1	0	1	0	1	0	0	0	0	13481	1783	62	0	13	0	RIMS4	20	43384785	Frame_Shift_Del	DEL	TC	TCGA-17-Z046-01A-01W-0746-08	1051023	43384785	19640735	1188	83148											
WFDC8	90199	broad.mit.edu	37	chr20	44197438	44197438	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaacaacatgtcttcacaCaaagacataataggatagtg	6	8	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44197438	T	T	44197438	1	4	75	0	1	0	0	0	0	0	0	0	17483	493	17	4		4	WFDC8	20	44197438	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	812653	44197438	18828082	1189	83149											
ZNF334	55713	broad.mit.edu	37	chr20	45130999	45130999	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccgaaaaaaggtctttcCacattcattacactcatagg	5	11	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45130999	A	A	45130999	4	1	75	1	0	0	0	0	0	1	0	0	17977	603	21	2	1067	2	ZNF334	20	45130999	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	933561	45130999	17894521	1190	83150											
SLC2A10	81031	broad.mit.edu	37	chr20	45354901	45354901	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgggggcatgcactgctgcGctggaccgcactgctgtgcc	15	14	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45354901	A	A	45354901	3	1	75	1	0	0	0	0	1	0	0	0	14653	1087	38	4	1232	4	SLC2A10	20	45354901	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	223902	45354901	17670619	1191	83151											
EYA2	2139	broad.mit.edu	37	chr20	45607322	45607322	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcatttgctgcacagagAacaaactggagggaggcccc	12	11	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45607322	T	T	45607322	1	4	75	0	1	0	0	0	0	0	0	0	5372	261	9	5		5	EYA2	20	45607322	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	252421	45607322	17418198	1192	83152											
PREX1	57580	broad.mit.edu	37	chr20	47317579	47317579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacacaacgtgattagtggCttctatctgctgagcatgcc	9	11	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47317579	A	A	47317579	1	1	75	0	1	0	0	0	0	0	0	0	12582	812	28	3		3	PREX1	20	47317579	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1710257	47317579	15707941	1193	83153											
ZNF217	7764	broad.mit.edu	37	chr20	52198122	52198122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaacacgtccccggctgcCtcccgtccacagacatggtg	11	16	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52198122	A	A	52198122	3	1	75	1	0	0	0	0	1	0	0	0	17898	681	24	2	1918	2	ZNF217	20	52198122	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4880543	52198122	10827398	1194	83154											
CBLN4	140689	broad.mit.edu	37	chr20	54573600	54573601	+	3'UTR	DEL	GA	-	-													tcacctggatgaacatcatgGagaaattgaatcctataggg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54573601	-	-	54573600	6	5	75	0	1	1	0	1	0	0	0	0	2733	1189	41	0		0	CBLN4	20	54573600	3'UTR	DEL	GA	TCGA-17-Z046-01A-01W-0746-08	2375478	54573600	8451920	1195	83155											
BMP7	655	broad.mit.edu	37	chr20	55746030	55746030	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagctagtggcagccacaGgcccggaccaccatgtttct	12	13	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55746030	T	T	55746030	2	4	75	1	0	0	0	0	0	0	0	1	1471	987	35	2		2	BMP7	20	55746030	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1172430	55746030	7279490	1196	83156											
VAPB	9217	broad.mit.edu	37	chr20	57015988	57015988	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagaaataaataaaattaTatccacaactgcatcaaaga	4	6	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57015988	A	A	57015988	3	1	75	1	0	0	0	0	1	0	0	0	17249	1406	49	5	440	5	VAPB	20	57015988	Missense_Mutation	SNP	T	TCGA-17-Z046-01A-01W-0746-08	1269958	57015988	6009532	1197	83157											
TPTE	7179	broad.mit.edu	37	chr21	10914281	10914281	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttatggtgagtgatagTttagggaggtgaacattgct	13	4	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10914281	C	C	10914281	1	2	75	0	1	0	0	0	0	0	0	0	16554	1740	60	5		5	TPTE	21	10914281	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08		10914281	37215614	1198	83158											
BAGE2	85319	broad.mit.edu	37	chr21	11047557	11047557	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgataccctttgtcacacGtatcacacactagcatcttg	5	12	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11047557	T	T	11047557	1	4	75	0	1	0	0	0	0	0	0	0	1297	1160	40	3		3	BAGE2	21	11047557	3'UTR	SNP	G	TCGA-17-Z046-01A-01W-0746-08	133276	11047557	37082338	1199	83159											
TMPRSS15	5651	broad.mit.edu	37	chr21	19776021	19776021	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagagaaaaatctctcaaAtttttaaagatgtgtaaagc	7	4	2	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19776021	G	G	19776021	1	3	75	0	1	0	0	0	0	0	0	0	16369	116	4	5		5	TMPRSS15	21	19776021	5'Flank	SNP	A	TCGA-17-Z046-01A-01W-0746-08	8728464	19776021	28353874	1200	83160											
N6AMT1	29104	broad.mit.edu	37	chr21	30248748	30248748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgaaagagtttcttggcCtgcttgtctggaaagtgcag	13	7	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30248748	A	A	30248748	3	1	75	1	0	0	0	0	1	0	0	0	10208	681	24	2	44	2	N6AMT1	21	30248748	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	10472727	30248748	17881147	1201	83161											
SETD4	54093	broad.mit.edu	37	chr21	37410517	37410517	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggctatgtccaaacttgtCttctcattcgtatctgaaat	7	9	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37410517	T	T	37410517	2	4	75	1	0	0	0	0	0	0	0	1	14246	912	32	4		4	SETD4	21	37410517	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7161769	37410517	10719378	1202	83162											
TTC3	7267	broad.mit.edu	37	chr21	38495130	38495130	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacaccatcctaaaactaaaGacatctagaaatgtaaaatt	4	8	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38495130	T	T	38495130	1	4	75	0	1	0	0	0	0	0	0	0	16823	957	33	3		3	TTC3	21	38495130	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1084613	38495130	9634765	1203	83163											
TTC3	7267	broad.mit.edu	37	chr21	38523250	38523250	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatataattctattaaatgcAgatttctaaattatgccttt	3	5	2	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38523250	T	T	38523250	1	4	75	0	1	0	0	0	0	0	0	0	16823	203	7	5		5	TTC3	21	38523250	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	28120	38523250	9606645	1204	83164											
PRDM15	63977	broad.mit.edu	37	chr21	43222973	43222974	+	Missense_Mutation	DNP	CC	AA	AA													gaaggtggcgtcctcgggcaCcggagcacccgcctcctctt							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	43222974	AA	AA	43222973	3	1	75	1	0	0	0	0	1	0	0	0	12562	507	18	3	591	3	PRDM15	21	43222973	Missense_Mutation	DNP	CC	TCGA-17-Z046-01A-01W-0746-08	4699723	43222973	4906922	1205	83165											
UMODL1	89766	broad.mit.edu	37	chr21	43543308	43543308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacactagggcgcaagggGctctaggttacatgggcctc	14	10	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43543308	T	T	43543308	1	4	75	0	1	0	0	0	0	0	0	0	17106	1218	42	3		3	UMODL1	21	43543308	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	320335	43543308	4586587	1206	83166											
RSPH1	89765	broad.mit.edu	37	chr21	43912951	43912952	+	Missense_Mutation	DNP	CC	AT	AT													attctccgatatatcgagcaCcatttttaaatttgtagatc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43912952	AT	AT	43912951	3	1	75	1	0	0	0	0	1	0	0	0	13813	507	18	3	766	3	RSPH1	21	43912951	Missense_Mutation	DNP	CC	TCGA-17-Z046-01A-01W-0746-08	369643	43912951	4216944	1207	83167											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45994767	45994767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctgctgcgtgcccgtcCcttcctgctgtgctcccacc	9	21	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45994767	A	A	45994767	3	1	75	1	0	0	0	0	1	0	0	0	8582	623	22	2	1134	2	KRTAP10-4	21	45994767	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2081816	45994767	2135128	1208	83168											
SUMO3	6612	broad.mit.edu	37	chr21	46226925	46226925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgtctgctgctggaacaCgtcgatggtgtcctcgtcct	11	14	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46226925	A	A	46226925	3	1	75	1	0	0	0	0	1	0	0	0	15507	536	19	3	62	3	SUMO3	21	46226925	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	232158	46226925	1902970	1209	83169											
COL18A1	80781	broad.mit.edu	37	chr21	46907463	46907463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggccggctctgaggggtaAgggggtgttgcctggggcag	22	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46907463	G	G	46907463	1	3	75	0	1	0	0	0	0	0	0	0	3707	87	3	5		5	COL18A1	21	46907463	Intron	SNP	A	TCGA-17-Z046-01A-01W-0746-08	680538	46907463	1222432	1210	83170											
PRMT2	3275	broad.mit.edu	37	chr21	48080601	48080601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggaggcctgagggctGctctggggttccagggcccc	17	13	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48080601	T	T	48080601	1	4	75	0	1	0	0	0	0	0	0	0	12643	1334	46	3		3	PRMT2	21	48080601	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1173138	48080601	49294	1211	83171											
POTEH	23784	broad.mit.edu	37	chr22	16287387	16287387	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acggacgtggtacctcggctCcatgaaagcgctgtcgtcgt	13	12	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16287387	G	G	16287387	3	3	75	1	0	0	0	0	1	0	0	0	12363	864	30	4	1178	4	POTEH	22	16287387	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08		16287387	35017179	1212	83172											
MICAL3	57553	broad.mit.edu	37	chr22	18301379	18301379	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcgtggggaagctgggctCgggccccttgctgcggtcca	18	12	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18301379	T	T	18301379	3	4	75	1	0	0	0	0	1	0	0	0	9664	893	31	4	1988	4	MICAL3	22	18301379	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2013992	18301379	33003187	1213	83173											
MED15	51586	broad.mit.edu	37	chr22	20929281	20929281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggctgccccgagctgcCcaagctttccttgccctggt	10	18	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20929281	A	A	20929281	1	1	75	0	1	0	0	0	0	0	0	0	9526	638	22	2		2	MED15	22	20929281	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2627902	20929281	30375285	1214	83174											
MYO18B	84700	broad.mit.edu	37	chr22	26239583	26239583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgtgggtgccttcgacCatgagcgttagctatctgga	13	8	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26239583	A	A	26239583	1	1	75	0	1	0	0	0	0	0	0	0	10160	609	21	2		2	MYO18B	22	26239583	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5310302	26239583	25064983	1215	83175											
AP1B1	162	broad.mit.edu	37	chr22	29727422	29727422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcaggcaccccagcgggCtccctcatgactcacccatc	7	18	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29727422	A	A	29727422	1	1	75	0	1	0	0	0	0	0	0	0	733	812	28	3		3	AP1B1	22	29727422	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	3487839	29727422	21577144	1216	83176											
NEFH	4744	broad.mit.edu	37	chr22	29884811	29884811	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttgccctgagtttatacTaatgtgttccgtgatccatc	7	9	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29884811	A	A	29884811	1	1	75	0	1	0	0	0	0	0	0	0	10409	1537	53	5		5	NEFH	22	29884811	Intron	SNP	T	TCGA-17-Z046-01A-01W-0746-08	157389	29884811	21419755	1217	83177											
SLC5A1	6523	broad.mit.edu	37	chr22	32505861	32505861	+	Intron	SNP	C	A	A													ggaaatttggggaaatttctCatttttgggaaatttctgca							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32505861	A	A	32505861	1	1	75	0	1	0	0	0	0	0	0	0	14775	841	29	3		3	SLC5A1	22	32505861	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2621050	32505861	18798705	1218	83178	380	2									
SLC5A1	6523	broad.mit.edu	37	chr22	32505868	32505868	+	Intron	DEL	G	-	-													tggggaaatttctcatttttGggaaatttctgcagaatagc							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32505868	-	-	32505868	6	5	75	0	1	1	0	1	0	0	0	0	14775	1363	47	0		0	SLC5A1	22	32505868	Intron	DEL	G	TCGA-17-Z046-01A-01W-0746-08	7	32505868	18798698	1219	83179	380	2									
CSF2RB	1439	broad.mit.edu	37	chr22	37322026	37322026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagccgtgtcctctcccaaCagggacctcctggagccagt	10	15	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37322026	A	A	37322026	1	1	75	0	1	0	0	0	0	0	0	0	3969	493	17	3		3	CSF2RB	22	37322026	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4816158	37322026	13982540	1220	83180											
TAB1	10454	broad.mit.edu	37	chr22	39818029	39818029	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcgtggctggcctgcatgGtgatgtgctcaccctgcctt	14	12	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39818029	A	A	39818029	1	1	75	0	1	0	0	0	0	0	0	0	15614	1276	44	4		4	TAB1	22	39818029	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2496003	39818029	11486537	1221	83181											
ZC3H7B	23264	broad.mit.edu	37	chr22	41735076	41735076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgcccctgttccctcacGttctggacctgctggccccc	9	19	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41735076	T	T	41735076	3	4	75	1	0	0	0	0	1	0	0	0	17699	1145	40	3	727	3	ZC3H7B	22	41735076	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1917047	41735076	9569490	1222	83182											
ACO2	50	broad.mit.edu	37	chr22	41904134	41904134	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcacactggagcaaaccagGgcattgcctccaaattctca	7	14	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41904134	C	C	41904134	1	2	75	0	1	0	0	0	0	0	0	0	147	1247	43	4		4	ACO2	22	41904134	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	169058	41904134	9400432	1223	83183											
MOV10L1	54456	broad.mit.edu	37	chr22	50598186	50598186	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtagaggagtttcaaggacAagagtatctggtcatcatca	11	6	5	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50598186	T	T	50598186	3	4	75	1	0	0	0	0	1	0	0	0	9813	130	5	5	3443	5	MOV10L1	22	50598186	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	8694052	50598186	706380	1224	83184											
SHOX	6473	broad.mit.edu	37	chrX	595436	595436	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgaaacagaggcgcagcCgcaccaacttcacgctggag	12	13	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	595436	G	G	595436	3	3	75	1	0	0	0	0	1	0	0	0	14401	652	23	4	367	4	SHOX	23	595436	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08		595436	154675124	1225	83185											
KAL1	3730	broad.mit.edu	37	chrX	8565262	8565262	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttgaggaactcacagctGgtcaagcattcgtagctctt	9	9	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8565262	A	A	8565262	2	1	75	1	0	0	0	0	0	0	0	1	8044	1335	47	4		4	KAL1	23	8565262	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	7969826	8565262	146705298	1226	83186											
GLRA2	2742	broad.mit.edu	37	chrX	14548187	14548187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaaacaggaatgaaccGgcagctagtgaacattttga	10	8	0	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14548187	T	T	14548187	3	4	75	1	0	0	0	0	1	0	0	0	6519	1116	39	1	10	1	GLRA2	23	14548187	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5982925	14548187	140722373	1227	83187											
PCYT1B	9468	broad.mit.edu	37	chrX	24580619	24580619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcctctcctggaacatctGcttctaaagataaattggag	8	10	3	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24580619	T	T	24580619	3	4	75	1	0	0	0	0	1	0	0	0	11705	1328	46	3	249	3	PCYT1B	23	24580619	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	10032432	24580619	130689941	1228	83188											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997672	27997672	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatggtatgcactgcactcGatcttggccctcctcctcgg	11	14	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27997672	T	T	27997672	2	4	75	1	0	0	0	0	0	0	0	1	4310	1066	37	3		3	DCAF8L1	23	27997672	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3417053	27997672	127272888	1229	83189											
DMD	1756	broad.mit.edu	37	chrX	32613934	32613934	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagattcatcaactaccacCaccatgtgagtgagagaatt	7	10	2	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32613934	T	T	32613934	2	4	75	1	0	0	0	0	0	0	0	1	4620	581	21	4		4	DMD	23	32613934	Silent	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4616262	32613934	122656626	1230	83190											
SUV39H1	6839	broad.mit.edu	37	chrX	48559162	48559162	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtagggagatgggacccGgtgtgtgtgtgcagctcttc	18	7	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48559162	A	A	48559162	1	1	75	0	1	0	0	0	0	0	0	0	15530	1131	39	4		4	SUV39H1	23	48559162	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	15945228	48559162	106711398	1231	83191											
CACNA1F	778	broad.mit.edu	37	chrX	49063215	49063215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggggggcagcagacggCggcgtggtaccaggtgccca	20	10	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49063215	A	A	49063215	3	1	75	1	0	0	0	0	1	0	0	0	2569	768	27	3	583	3	CACNA1F	23	49063215	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	504053	49063215	106207345	1232	83192											
SSX7	280658	broad.mit.edu	37	chrX	52681440	52681440	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccttaagagacaagctttGacctgtcacggtggctcata	9	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52681440	C	C	52681440	1	2	75	0	1	0	0	0	0	0	0	0	15327	1305	45	4		4	SSX7	23	52681440	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3618225	52681440	102589120	1233	83193											
HUWE1	10075	broad.mit.edu	37	chrX	53615428	53615428	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacttatccactctgacaCggtttttgtgtcacttgttg	8	10	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53615428	T	T	53615428	3	4	75	1	0	0	0	0	1	0	0	0	7531	536	19	4	8788	4	HUWE1	23	53615428	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	933988	53615428	101655132	1234	83194											
ITIH5L	347365	broad.mit.edu	37	chrX	54780164	54780164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcttctcttctgagtgtGggatttggatcacaaagtgg	12	6	4	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54780164	T	T	54780164	3	4	75	1	0	0	0	0	1	0	0	0	7978	1348	47	2	681	2	ITIH5L	23	54780164	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1164736	54780164	100490396	1235	83195											
ITIH5L	347365	broad.mit.edu	37	chrX	54784971	54784971	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgcccagttcctgtttGcctggctgcacctgtcctgc	11	14	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54784971	T	T	54784971	2	4	75	1	0	0	0	0	0	0	0	1	7978	1306	46	3		3	ITIH5L	23	54784971	Silent	SNP	G	TCGA-17-Z046-01A-01W-0746-08	4807	54784971	100485589	1236	83196											
MAGED2	10916	broad.mit.edu	37	chrX	54839579	54839579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaggtgctgcgcaagttGgggctgcgccctgggtatga	19	8	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54839579	T	T	54839579	3	4	75	1	0	0	0	0	1	0	0	0	9276	1339	47	2	1224	2	MAGED2	23	54839579	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	54608	54839579	100430981	1237	83197											
HEPH	9843	broad.mit.edu	37	chrX	65418949	65418949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgtaatcatgaccaatcCtgaaaacactgattttattg	5	9	1	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65418949	A	A	65418949	1	1	75	0	1	0	0	0	0	0	0	0	7121	696	24	2		2	HEPH	23	65418949	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	10579370	65418949	89851611	1238	83198											
STARD8	9754	broad.mit.edu	37	chrX	67937593	67937593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactcggaaggcctgggaGgcctggcctgtggcctcgtt	15	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67937593	T	T	67937593	3	4	75	1	0	0	0	0	1	0	0	0	15381	991	35	2	859	2	STARD8	23	67937593	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	2518644	67937593	87332967	1239	83199											
NAP1L2	4674	broad.mit.edu	37	chrX	72433167	72433167	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaccaagtaaaaaatcatCatttccatcccttccatttg	4	11	2	1	rs146885760	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72433167	A	A	72433167	3	1	75	1	0	0	0	0	1	0	0	0	10251	826	29	3	224	3	NAP1L2	23	72433167	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	4495574	72433167	82837393	1240	83200											
CHIC1	53344	broad.mit.edu	37	chrX	72797304	72797304	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctaacagggaaggtaagtGagaatttgctttgaactttt	10	4	1	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72797304	T	T	72797304	1	4	75	0	1	0	0	0	0	0	0	0	3374	1305	45	3		3	CHIC1	23	72797304	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	364137	72797304	82473256	1241	83201											
P2RY10	27334	broad.mit.edu	37	chrX	78216603	78216603	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaatgcagttgcgttgGtcgggatgattacagttgct	13	5	0	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78216603	C	C	78216603	3	2	75	1	0	0	0	0	1	0	0	0	11441	1261	44	4	588	4	P2RY10	23	78216603	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	5419299	78216603	77053957	1242	83202											
DACH2	117154	broad.mit.edu	37	chrX	85416096	85416096	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaattggcacaaatgctaCtgtgttggggttgtagccaa	12	6	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85416096	A	A	85416096	1	1	75	0	1	0	0	0	0	0	0	0	4254	580	20	3		3	DACH2	23	85416096	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	7199493	85416096	69854464	1243	83203											
KLHL4	56062	broad.mit.edu	37	chrX	86880740	86880740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagccctcggacaaagcCtagaaaatcaactgtggggg	12	10	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86880740	A	A	86880740	3	1	75	1	0	0	0	0	1	0	0	0	8462	681	24	2	1290	2	KLHL4	23	86880740	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1464644	86880740	68389820	1244	83204											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105011010	105011010	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcagaagacttattatcGtgctaactccagactatatt	6	8	0	3			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105011010	A	A	105011010	3	1	75	1	0	0	0	0	1	0	0	0	7732	1145	40	4	1455	4	IL1RAPL2	23	105011010	Missense_Mutation	SNP	G	TCGA-17-Z046-01A-01W-0746-08	18130270	105011010	50259550	1245	83205											
COL4A5	1287	broad.mit.edu	37	chrX	107938483	107938483	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtattgcggcacatttttcCttgtcttttatagcatacaa	7	8	1	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107938483	T	T	107938483	1	4	75	0	1	0	0	0	0	0	0	0	3726	696	24	4		4	COL4A5	23	107938483	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2927473	107938483	47332077	1246	83206											
PAK3	5063	broad.mit.edu	37	chrX	110366488	110366488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcttcgctctatcttcCcaggaggaggggataaaagt	12	10	2	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110366488	A	A	110366488	3	1	75	1	0	0	0	0	1	0	0	0	11496	623	22	2	159	2	PAK3	23	110366488	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	2428005	110366488	44904072	1247	83207											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698093	111698093	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggggccaagtcatgcctgCcctggccaccacagtgatgc	12	14	1	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111698093	T	T	111698093	3	4	75	1	0	0	0	0	1	0	0	0	17710	739	26	4	139	4	ZCCHC16	23	111698093	Missense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1331605	111698093	43572467	1248	83208											
LRCH2	57631	broad.mit.edu	37	chrX	114357578	114357579	+	Intron	DNP	CC	AT	AT													ttgaaaatgaaatctgtacgCcttattaattttccaagtta							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	114357579	AT	AT	114357578	1	1	75	0	1	0	0	0	0	0	0	0	9020	754	26	3		3	LRCH2	23	114357578	Intron	DNP	CC	TCGA-17-Z046-01A-01W-0746-08	2659485	114357578	40912982	1249	83209											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299348	125299348	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggccatggcggtcgcccAggcacagggggtccagggtg	19	11	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125299348	T	T	125299348	3	4	75	1	0	0	0	0	1	0	0	0	4298	188	7	5	835	5	DCAF12L2	23	125299348	Missense_Mutation	SNP	A	TCGA-17-Z046-01A-01W-0746-08	10941770	125299348	29971212	1250	83210											
XPNPEP2	7512	broad.mit.edu	37	chrX	128881443	128881443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgccgggggtggggggtGggcaggctgctggggcaggc	24	8	0	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128881443	A	A	128881443	1	1	75	0	1	0	0	0	0	0	0	0	17570	1363	47	4		4	XPNPEP2	23	128881443	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	3582095	128881443	26389117	1251	83211											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217403	130217403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcctctcagaccttcctGgtggactcaccccacacaga	8	17	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130217403	T	T	130217403	1	4	75	0	1	0	0	0	0	0	0	0	885	1363	47	2		2	ARHGAP36	23	130217403	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	1335960	130217403	25053157	1252	83212											
IGSF1	3547	broad.mit.edu	37	chrX	130415341	130415341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaagaccagaatcagagGccttgatggggacaggggca	16	7	1	5			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130415341	T	T	130415341	1	4	75	0	1	0	0	0	0	0	0	0	7666	1218	42	3		3	IGSF1	23	130415341	Intron	SNP	G	TCGA-17-Z046-01A-01W-0746-08	197938	130415341	24855219	1253	83213											
IGSF1	3547	broad.mit.edu	37	chrX	130626766	130626766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctcactgtctcctacagCaacttggcaccctcatccag	6	16	3	0			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130626766	A	A	130626766	1	1	75	0	1	0	0	0	0	0	0	0	7666	725	25	3		3	IGSF1	23	130626766	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	211425	130626766	24643794	1254	83214											
SAGE1	55511	broad.mit.edu	37	chrX	134987455	134987455	+	Frame_Shift_Del	DEL	G	-	-													gtgaagagaggatggaaaatGgccaatctcgaactgacaaa							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134987455	-	-	134987455	7	5	75	1	0	1	0	1	0	0	0	0	13920	1348	47	0	372	0	SAGE1	23	134987455	Frame_Shift_Del	DEL	G	TCGA-17-Z046-01A-01W-0746-08	4360689	134987455	20283105	1255	83215											
SAGE1	55511	broad.mit.edu	37	chrX	134989101	134989101	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgctaccatcacttaCaatgtccctgaggagaagat	8	11	1	4			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134989101	A	A	134989101	4	1	75	1	0	0	0	0	0	1	0	0	13920	489	17	3	779	3	SAGE1	23	134989101	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1646	134989101	20281459	1256	83216											
MAP7D3	79649	broad.mit.edu	37	chrX	135309417	135309417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttataatctggttctcatccCctgataaagtgtcaagtcag	7	9	4	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135309417	A	A	135309417	1	1	75	0	1	0	0	0	0	0	0	0	9361	638	22	2		2	MAP7D3	23	135309417	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	320316	135309417	19961143	1257	83217											
SLITRK2	84631	broad.mit.edu	37	chrX	144904540	144904540	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaagtaatgccttttgcTggcgtccttgaacatattgg	9	8	0	1			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144904540	C	C	144904540	2	2	75	1	0	0	0	0	0	0	0	1	14857	1567	55	5		5	SLITRK2	23	144904540	Silent	SNP	T	TCGA-17-Z046-01A-01W-0746-08	9595123	144904540	10366020	1258	83218											
PASD1	139135	broad.mit.edu	37	chrX	150828258	150828258	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgtttgtagattctgattCaacttattgctccagtacag	7	8	2	2			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150828258	A	A	150828258	4	1	75	1	0	0	0	0	0	1	0	0	11565	838	29	3	825	3	PASD1	23	150828258	Nonsense_Mutation	SNP	C	TCGA-17-Z046-01A-01W-0746-08	5923718	150828258	4442302	1259	83219											
GABRE	2564	broad.mit.edu	37	chrX	151130863	151130863	+	Intron	SNP	C	A	A													tcagaaggggagagagaattCcaggaagtgagactccagag							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151130863	A	A	151130863	1	1	75	0	1	0	0	0	0	0	0	0	6230	870	30	3		3	GABRE	23	151130863	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	302605	151130863	4139697	1260	83220	381	2									
GABRE	2564	broad.mit.edu	37	chrX	151130864	151130864	+	Intron	SNP	C	A	A													cagaaggggagagagaattcCaggaagtgagactccagagg							TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151130864	A	A	151130864	1	1	75	0	1	0	0	0	0	0	0	0	6230	609	21	2		2	GABRE	23	151130864	Intron	SNP	C	TCGA-17-Z046-01A-01W-0746-08	1	151130864	4139696	1261	83221	381	2									
ARHGEF19	128272	broad.mit.edu	37	chr1	16524961	16524961	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccagcctgtgccctcaaTgccaaggccacagaagcgaa	10	14	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16524961	C	C	16524961	1	2	76	0	1	0	0	0	0	0	0	0	904	1479	51	5		5	ARHGEF19	1	16524961	3'UTR	SNP	T	TCGA-17-Z047-01A-01W-0747-08		16524961	232725660	1	83222											
MAST2	23139	broad.mit.edu	37	chr1	46313085	46313086	+	Intron	INS	-	G	G													ttgtttgaatatctttttttINSgggggggatcaagatgattt							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46313086	G	G	46313085	6	5	76	0	1	1	1	0	0	0	0	0	9417	1827	63	0		0	MAST2	1	46313085	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	29788124	46313085	202937536	2	83223											
ORC1L	4998	broad.mit.edu	37	chr1	52838777	52838777	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgccactgcactccagcCtgggcgacagagcaagaccc	11	16	0	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52838777	A	A	52838777	1	1	76	0	1	0	0	0	0	0	0	0	11355	696	24	2		2	ORC1L	1	52838777	3'UTR	SNP	C	TCGA-17-Z047-01A-01W-0747-08	6525692	52838777	196411844	3	83224											
MYSM1	114803	broad.mit.edu	37	chr1	59133518	59133519	+	Splice_Site	DEL	CT	-	-													tttttaaaagagagaacttaCttcaactactttatcaactt							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59133519	-	-	59133518	8	5	76	1	0	1	0	1	0	0	1	0	10195	579	20	0	667	0	MYSM1	1	59133518	Splice_Site	DEL	CT	TCGA-17-Z047-01A-01W-0747-08	6294741	59133518	190117103	4	83225											
SLC22A15	55356	broad.mit.edu	37	chr1	116574280	116574280	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatatcctgctccttcttcAgggtacagggaattttacct	8	10	2	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116574280	G	G	116574280	1	3	76	0	1	0	0	0	0	0	0	0	14559	203	7	5		5	SLC22A15	1	116574280	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08	57440762	116574280	132676341	5	83226											
SPRR2F	6705	broad.mit.edu	37	chr1	153085333	153085333	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctccaatctccaagaaAttatttaaactcttaattcc	1	10	3	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153085333	T	T	153085333	1	4	76	0	1	0	0	0	0	0	0	0	15219	116	4	5		5	SPRR2F	1	153085333	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08	36511053	153085333	96165288	6	83227											
SYT11	23208	broad.mit.edu	37	chr1	155850896	155850897	+	Intron	INS	-	C	C													caaagatacgaacaacagagINSccccccctttcccaacatga							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155850897	C	C	155850896	6	5	76	0	1	1	1	0	0	0	0	0	15586	986	34	0		0	SYT11	1	155850896	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	2765563	155850896	93399725	7	83228											
SPTA1	6708	broad.mit.edu	37	chr1	158647363	158647363	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaagtgcacacaatttcTtcttcattgaaaacagtgaa	5	8	4	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158647363	C	C	158647363	1	2	76	0	1	0	0	0	0	0	0	0	15234	1624	56	5		5	SPTA1	1	158647363	Intron	SNP	T	TCGA-17-Z047-01A-01W-0747-08	2796467	158647363	90603258	8	83229											
COPA	1314	broad.mit.edu	37	chr1	160268683	160268689	+	Frame_Shift_Del	DEL	CTTGACA	-	-													ctaaagcgagttttctcatcCttgacaaaatgcagtgccac							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160268689	-	-	160268683	7	5	76	1	0	1	0	1	0	0	0	0	3759	680	24	0	1805	0	COPA	1	160268683	Frame_Shift_Del	DEL	CTTGACA	TCGA-17-Z047-01A-01W-0747-08	1621320	160268683	88981938	9	83230											
PRG4	10216	broad.mit.edu	37	chr1	186280751	186280751	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtgttacataattgacaaGattacaaaacttttaaagaa	5	4	0	3			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186280751	A	A	186280751	1	1	76	0	1	0	0	0	0	0	0	0	12587	957	33	4		4	PRG4	1	186280751	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08	26012068	186280751	62969870	10	83231											
ENAH	55740	broad.mit.edu	37	chr1	225702678	225702678	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttatgtgggaaggtacgcaGaatgccatgctaaattaaac	10	6	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225702678	A	A	225702678	1	1	76	0	1	0	0	0	0	0	0	0	5153	957	33	4		4	ENAH	1	225702678	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08	39421927	225702678	23547943	11	83232											
RRM2	6241	broad.mit.edu	37	chr2	10269545	10269545	+	3'UTR	DEL	T	-	-													atgtgcccttacttggctgaTtttttttttccatctcataa					rs79162203		TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10269545	-	-	10269545	6	5	76	0	1	1	0	1	0	0	0	0	13793	1508	52	0		0	RRM2	2	10269545	3'UTR	DEL	T	TCGA-17-Z047-01A-01W-0747-08		10269545	232929828	12	83233											
KCNF1	3754	broad.mit.edu	37	chr2	11053385	11053385	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcacgcacctgggtgcccGcatgatggagctgaccaacg	13	14	1	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11053385	A	A	11053385	3	1	76	1	0	0	0	0	1	0	0	0	8096	1087	38	4	835	4	KCNF1	2	11053385	Missense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	783840	11053385	232145988	13	83234											
CIB4	130106	broad.mit.edu	37	chr2	26806764	26806764	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaagccattctcattaaAatctgcaaagaagaggccag	8	8	2	3			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26806764	C	C	26806764	3	2	76	1	0	0	0	0	1	0	0	0	3454	14	1	5	238	5	CIB4	2	26806764	Missense_Mutation	SNP	A	TCGA-17-Z047-01A-01W-0747-08	15753379	26806764	216392609	14	83235											
ZNF514	84874	broad.mit.edu	37	chr2	95815929	95815929	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacatcttgaatgtgtttttCcactgatactacctggaata	6	9	1	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95815929	T	T	95815929	3	4	76	1	0	0	0	0	1	0	0	0	18086	864	30	4	905	4	ZNF514	2	95815929	Missense_Mutation	SNP	C	TCGA-17-Z047-01A-01W-0747-08	69009165	95815929	147383444	15	83236											
HOXD8	3234	broad.mit.edu	37	chr2	176995902	176995903	+	Intron	INS	-	TA	TA													ctcctcttgcctgcacacccINStatatatatatatcggagct					rs138795034	by1000genomes	TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	176995903	TA	TA	176995902	6	5	76	0	1	1	1	0	0	0	0	0	7392	696	24	0		0	HOXD8	2	176995902	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	81179973	176995902	66203471	16	83237											
HHATL	57467	broad.mit.edu	37	chr3	42734573	42734573	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacccctgtccctcacctgtGagtagcaggcgccgggcaac	11	17	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42734573	C	C	42734573	2	2	76	1	0	0	0	0	0	0	0	1	7157	1277	45	4		4	HHATL	3	42734573	Silent	SNP	G	TCGA-17-Z047-01A-01W-0747-08		42734573	155287857	17	83238											
PDZRN3	23024	broad.mit.edu	37	chr3	73433228	73433228	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccaggggctggttggggTccagctccttcagggacggg	17	10	1	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73433228	C	C	73433228	3	2	76	1	0	0	0	0	1	0	0	0	11803	1667	58	5	715	5	PDZRN3	3	73433228	Missense_Mutation	SNP	T	TCGA-17-Z047-01A-01W-0747-08	30698655	73433228	124589202	18	83239											
GABRR3	200959	broad.mit.edu	37	chr3	97711607	97711607	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatatggacttaatacaaaGgcttacaacactgtcaagag	8	8	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97711607	A	A	97711607	1	1	76	0	1	0	0	0	0	0	0	0	6238	1015	35	4		4	GABRR3	3	97711607	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08	24278379	97711607	100310823	19	83240											
ZDHHC23	254887	broad.mit.edu	37	chr3	113667649	113667649	+	Translation_Start_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatggtgacaggtgcaaatCatgacacagaagggcagtat	12	7	2	3			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113667649	G	G	113667649	1	3	76	1	0	0	0	0	0	0	0	0	17740	841	29	4		4	ZDHHC23	3	113667649	Translation_Start_Site	SNP	C	TCGA-17-Z047-01A-01W-0747-08	15956042	113667649	84354781	20	83241											
ZBTB20	26137	broad.mit.edu	37	chr3	114070211	114070211	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtagatcctgtccacgctGtgctgtgggtggctctgcag	15	10	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114070211	C	C	114070211	3	2	76	1	0	0	0	0	1	0	0	0	17655	1368	48	4	1519	4	ZBTB20	3	114070211	Missense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	402562	114070211	83952219	21	83242											
SPATA16	83893	broad.mit.edu	37	chr3	172643445	172643445	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggtcaaatagataacaTatcaaaatcatatttcatta	3	5	4	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172643445	C	C	172643445	1	2	76	0	1	0	0	0	0	0	0	0	15117	1421	49	5		5	SPATA16	3	172643445	Intron	SNP	T	TCGA-17-Z047-01A-01W-0747-08	58573234	172643445	25378985	22	83243											
GLRB	2743	broad.mit.edu	37	chr4	158060051	158060051	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcctcaatttgatatcaAaaaggaagatattgaatatg	7	5	2	3			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158060051	G	G	158060051	3	3	76	1	0	0	0	0	1	0	0	0	6522	14	1	5	723	5	GLRB	4	158060051	Missense_Mutation	SNP	A	TCGA-17-Z047-01A-01W-0747-08		158060051	33094225	23	83244											
GRIA2	2891	broad.mit.edu	37	chr4	158281079	158281079	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgtttgataaaatgtGgacctacatgcggagtgcgg	14	6	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158281079	A	A	158281079	4	1	76	1	0	0	0	0	0	1	0	0	6834	1357	47	4	2125	4	GRIA2	4	158281079	Nonsense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	221028	158281079	32873197	24	83245											
SLCO6A1	133482	broad.mit.edu	37	chr5	101755463	101755463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttactggatagataattAttaattgcctgaggaatatg	11	3	0	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101755463	G	G	101755463	1	3	76	0	1	0	0	0	0	0	0	0	14846	464	16	5		5	SLCO6A1	5	101755463	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08		101755463	79159797	25	83246											
GMDS	2762	broad.mit.edu	37	chr6	2115854	2115854	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaatctatgagtactTcaattaggattaatacttaa	4	4	2	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2115854	G	G	2115854	1	3	76	0	1	0	0	0	0	0	0	0	6550	1798	62	5		5	GMDS	6	2115854	Intron	SNP	T	TCGA-17-Z047-01A-01W-0747-08		2115854	168999213	26	83247											
HIST1H1T	3010	broad.mit.edu	37	chr6	26107824	26107824	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctttagcctttctcccGctcctaacagttttaggagt	7	13	1	0	rs143215132	byFrequency;by1000genomes	TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26107824	A	A	26107824	2	1	76	1	0	0	0	0	0	0	0	1	7194	1078	38	4		4	HIST1H1T	6	26107824	Silent	SNP	G	TCGA-17-Z047-01A-01W-0747-08	23991970	26107824	145007243	27	83248											
PSMB8	5696	broad.mit.edu	37	chr6	32809248	32809249	+	Intron	INS	-	C	C													ggtttctcaatcttaaatcaINSccccccccaccacccgccga							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32809249	C	C	32809248	6	5	76	0	1	1	1	0	0	0	0	0	12789	174	6	0		0	PSMB8	6	32809248	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	6701424	32809248	138305819	28	83249											
CUL7	9820	broad.mit.edu	37	chr6	43014384	43014384	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggcacaggggcagaaggaAcacggagacacacacggaaa	16	9	0	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43014384	C	C	43014384	1	2	76	0	1	0	0	0	0	0	0	0	4093	58	2	5		5	CUL7	6	43014384	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08	10205136	43014384	128100683	29	83250											
MYB	4602	broad.mit.edu	37	chr6	135516787	135516787	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgcaactactcttatctttCctccaacagcatctgatacc	3	14	3	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135516787	T	T	135516787	1	4	76	0	1	0	0	0	0	0	0	0	10101	870	30	4		4	MYB	6	135516787	Intron	SNP	C	TCGA-17-Z047-01A-01W-0747-08	92502403	135516787	35598280	30	83251											
STXBP5	134957	broad.mit.edu	37	chr6	147636633	147636633	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatattaaagtatctgacatAtattatcttttttccagtaa	3	5	2	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147636633	C	C	147636633	1	2	76	0	1	0	0	0	0	0	0	0	15474	464	16	5		5	STXBP5	6	147636633	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08	12119846	147636633	23478434	31	83252											
PACRG	135138	broad.mit.edu	37	chr6	163378392	163378392	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaccaccacaggccctgctGacatgtttttttgttttgga	9	10	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163378392	T	T	163378392	1	4	76	0	1	0	0	0	0	0	0	0	11464	1305	45	3		3	PACRG	6	163378392	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08	15741759	163378392	7736675	32	83253											
C7orf46	340277	broad.mit.edu	37	chr7	23738046	23738046	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaagttaagctatcattTtactttcttttatgtaagcc	4	8	3	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23738046	G	G	23738046	1	3	76	0	1	0	0	0	0	0	0	0	2421	1856	64	5		5	C7orf46	7	23738046	Intron	SNP	T	TCGA-17-Z047-01A-01W-0747-08		23738046	135400617	33	83254											
POU6F2	11281	broad.mit.edu	37	chr7	39446014	39446014	+	Intron	DEL	T	-	-													ccaacattttccttccagccTcgtttccatcatccccctac					rs11354354		TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39446014	-	-	39446014	6	5	76	0	1	1	0	1	0	0	0	0	12381	1566	54	0		0	POU6F2	7	39446014	Intron	DEL	T	TCGA-17-Z047-01A-01W-0747-08	15707968	39446014	119692649	34	83255											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	76	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-17-Z047-01A-01W-0747-08	15813501	55259515	103879148	35	83256											
TBXAS1	6916	broad.mit.edu	37	chr7	139529130	139529130	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcacggttcccataagggCggcgagatcagcctcctgtc	13	13	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139529130	T	T	139529130	1	4	76	0	1	0	0	0	0	0	0	0	15786	783	27	4		4	TBXAS1	7	139529130	5'UTR	SNP	C	TCGA-17-Z047-01A-01W-0747-08	84269615	139529130	19609533	36	83257											
LGI3	203190	broad.mit.edu	37	chr8	22011779	22011779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggatgccagacccccaGcagcactcgccctacgcccc	8	21	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22011779	T	T	22011779	1	4	76	0	1	0	0	0	0	0	0	0	8825	986	34	3		3	LGI3	8	22011779	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08		22011779	124352243	37	83258											
SMARCA2	6595	broad.mit.edu	37	chr9	2056743	2056743	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctcaactccaaagcataCaaacggagcaagcgccagac	8	14	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2056743	T	T	2056743	2	4	76	1	0	0	0	0	0	0	0	1	14883	489	17	4		4	SMARCA2	9	2056743	Silent	SNP	C	TCGA-17-Z047-01A-01W-0747-08		2056743	139156688	38	83259											
ACER2	340485	broad.mit.edu	37	chr9	19424829	19424829	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtatctaccaaagatctttCggaatgaccggtaagcttgc	10	9	2	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19424829	T	T	19424829	3	4	76	1	0	0	0	0	1	0	0	0	139	875	31	4	365	4	ACER2	9	19424829	Missense_Mutation	SNP	C	TCGA-17-Z047-01A-01W-0747-08	17368086	19424829	121788602	39	83260											
FLJ46321	389763	broad.mit.edu	37	chr9	84606360	84606360	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accatcttgaagacttttccGgaaatgttatctctaggtgg	9	8	2	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84606360	A	A	84606360	2	1	76	1	0	0	0	0	0	0	0	1	5990	1103	39	4		4	FLJ46321	9	84606360	Silent	SNP	G	TCGA-17-Z047-01A-01W-0747-08	65181531	84606360	56607071	40	83261											
TSC1	7248	broad.mit.edu	37	chr9	135798791	135798791	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtcaaagaaatcaagaAgatgctgtttcccagactgt	8	7	2	4			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135798791	T	T	135798791	3	4	76	1	0	0	0	0	1	0	0	0	16730	72	3	5	3114	5	TSC1	9	135798791	Missense_Mutation	SNP	A	TCGA-17-Z047-01A-01W-0747-08	51192431	135798791	5414640	41	83262											
COBRA1	25920	broad.mit.edu	37	chr9	140161632	140161642	+	Intron	DEL	GTGGGGCTGAG	-	-													agggctgggcaggggtcggtGtggggctgaggtggggctga					rs3936177	by1000genomes	TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140161642	-	-	140161632	6	5	76	0	1	1	0	1	0	0	0	0	3687	1392	48	0		0	COBRA1	9	140161632	Intron	DEL	GTGGGGCTGAG	TCGA-17-Z047-01A-01W-0747-08	4362841	140161632	1051799	42	83263											
RAB18	22931	broad.mit.edu	37	chr10	27822934	27822934	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatttataggtaggtgtgtGaatgaatatctgtcctttca	9	4	2	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27822934	C	C	27822934	1	2	76	0	1	0	0	0	0	0	0	0	13011	1305	45	4		4	RAB18	10	27822934	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08		27822934	107711813	43	83264			1	65		3	3	3925	G		5.76139e-05
RAB18	22931	broad.mit.edu	37	chr10	27826846	27826846	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggtgtacaatgtgcctttGaagaacttgttgaaaagatc	10	5	0	4			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27826846	A	A	27826846	3	1	76	1	0	0	0	0	1	0	0	0	13011	1291	45	4	513	4	RAB18	10	27826846	Missense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	3912	27826846	107707901	44	83265			1	65		3	3	3925	G		5.76139e-05
RAB18	22931	broad.mit.edu	37	chr10	27826858	27826858	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcctttgaagaacttgttGaaaagatcattcagacccct	8	9	2	5			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27826858	A	A	27826858	3	1	76	1	0	0	0	0	1	0	0	0	13011	1291	45	4	525	4	RAB18	10	27826858	Missense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	12	27826858	107707889	45	83266			1	65		3	3	3925	G		5.76139e-05
ARMC4	55130	broad.mit.edu	37	chr10	28284106	28284106	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagacctgagcttagcacaCgcactacatcagagcagaaa	8	12	2	4			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28284106	T	T	28284106	1	4	76	1	0	0	0	0	0	0	0	0	957	551	19	4		4	ARMC4	10	28284106	Translation_Start_Site	SNP	C	TCGA-17-Z047-01A-01W-0747-08	457248	28284106	107250641	46	83267											
ZNF518A	9849	broad.mit.edu	37	chr10	97916895	97916895	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattgtagctatggtgccacCaggagagaacaccttgtaag	11	8	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97916895	G	G	97916895	2	3	76	1	0	0	0	0	0	0	0	1	18089	581	21	4		4	ZNF518A	10	97916895	Silent	SNP	C	TCGA-17-Z047-01A-01W-0747-08	69632789	97916895	37617852	47	83268											
NRAP	4892	broad.mit.edu	37	chr10	115364589	115364589	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctgcagctggcccatgcGccggcagtgctggatccggg	16	14	1	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115364589	A	A	115364589	3	1	76	1	0	0	0	0	1	0	0	0	10733	1087	38	4	1218	4	NRAP	10	115364589	Missense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	17447694	115364589	20170158	48	83269											
C10orf81	79949	broad.mit.edu	37	chr10	115535691	115535691	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttgaagagaacaattacAtcttgaaacagtgtatttgg	9	5	1	3			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115535691	G	G	115535691	1	3	76	0	1	0	0	0	0	0	0	0	1630	232	8	5		5	C10orf81	10	115535691	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08	171102	115535691	19999056	49	83270											
OR10A5	144124	broad.mit.edu	37	chr11	6865347	6865347	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttgtttgtttgtttttgCcaccatgcatatattcagct	6	7	1	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6865347	T	T	6865347	1	4	76	0	1	0	0	0	0	0	0	0	10987	754	26	4		4	OR10A5	11	6865347	5'Flank	SNP	C	TCGA-17-Z047-01A-01W-0747-08		6865347	128141169	50	83271											
USH1C	10083	broad.mit.edu	37	chr11	17519674	17519674	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggtttgaggcaggcaggTgagggaggaaaggagggagg	23	3	0	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17519674	G	G	17519674	1	3	76	0	1	0	0	0	0	0	0	0	17160	1711	59	5		5	USH1C	11	17519674	Intron	SNP	T	TCGA-17-Z047-01A-01W-0747-08	10654327	17519674	117486842	51	83272											
C11orf9	745	broad.mit.edu	37	chr11	61545814	61545815	+	Intron	INS	-	C	C													ctgtgagtagccctttaccaINScccccccacccatctttggc							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61545815	C	C	61545814	6	5	76	0	1	1	1	0	0	0	0	0	1683	174	6	0		0	C11orf9	11	61545814	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	44026140	61545814	73460702	52	83273											
ALDH3B1	221	broad.mit.edu	37	chr11	67790294	67790295	+	Intron	INS	-	G	G													cagcacaagtggtggcagcaINSgggggggcaccaaaatccag							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67790295	G	G	67790294	6	5	76	0	1	1	1	0	0	0	0	0	499	203	7	0		0	ALDH3B1	11	67790294	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	6244480	67790294	67216222	53	83274											
KRT85	3891	broad.mit.edu	37	chr12	52754606	52754606	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgcaggcaggcaggtgCttggcaggaagccctggctc	17	10	0	1	rs62619991	by1000genomes	TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52754606	T	T	52754606	1	4	76	0	1	0	0	0	0	0	0	0	8570	812	28	4		4	KRT85	12	52754606	3'UTR	SNP	C	TCGA-17-Z047-01A-01W-0747-08		52754606	81097289	54	83275											
ERP29	10961	broad.mit.edu	37	chr12	112457721	112457722	+	Intron	INS	-	G	G													tggacaagtccaggacggctINSgggggggcagagagggagga							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112457722	G	G	112457721	6	5	76	0	1	1	1	0	0	0	0	0	5284	1595	55	0		0	ERP29	12	112457721	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	59703115	112457721	21394174	55	83276											
COL4A2	1284	broad.mit.edu	37	chr13	111109624	111109624	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgtccgtggggctgatgccCtgcgtctgcgtgggacccca	16	14	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111109624	G	G	111109624	1	3	76	0	1	0	0	0	0	0	0	0	3722	696	24	4		4	COL4A2	13	111109624	Intron	SNP	C	TCGA-17-Z047-01A-01W-0747-08		111109624	4060254	56	83277											
TEP1	7011	broad.mit.edu	37	chr14	20854269	20854270	+	Frame_Shift_Ins	INS	-	G	G													tggtcaggaaggttgtagctINSggggggaatgtatccataac							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20854270	G	G	20854269	7	5	76	1	0	1	1	0	0	0	0	0	15881	1580	55	0	5080	0	TEP1	14	20854269	Frame_Shift_Ins	INS	-	TCGA-17-Z047-01A-01W-0747-08		20854269	86495271	57	83278											
SIX1	6495	broad.mit.edu	37	chr14	61113191	61113191	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctggtctggactttggggaGgtgagaattcctcttctgag	14	7	4	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61113191	C	C	61113191	3	2	76	1	0	0	0	0	1	0	0	0	14459	1000	35	4	193	4	SIX1	14	61113191	Missense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	40258922	61113191	46236349	58	83279											
RAD51L1	5890	broad.mit.edu	37	chr14	69151672	69151672	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctttcccttccttccttcCttctttccttccttccttcc	0	20	1	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69151672	T	T	69151672	1	4	76	0	1	0	0	0	0	0	0	0	13097	696	24	4		4	RAD51L1	14	69151672	Intron	SNP	C	TCGA-17-Z047-01A-01W-0747-08	8038481	69151672	38197868	59	83280											
DICER1	23405	broad.mit.edu	37	chr14	95592941	95592941	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgaaattaaagtagaatcTctttcttttgaatgtacaga	6	5	2	3			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95592941	C	C	95592941	2	2	76	1	0	0	0	0	0	0	0	1	4561	1548	54	5		5	DICER1	14	95592941	Silent	SNP	T	TCGA-17-Z047-01A-01W-0747-08	26441269	95592941	11756599	60	83281											
CASC5	57082	broad.mit.edu	37	chr15	40920455	40920455	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagccatctgcttacttaaCtaataataagtagttttcag	6	8	2	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40920455	G	G	40920455	1	3	76	0	1	0	0	0	0	0	0	0	2689	580	20	4		4	CASC5	15	40920455	Intron	SNP	C	TCGA-17-Z047-01A-01W-0747-08		40920455	61610937	61	83282											
CETP	1071	broad.mit.edu	37	chr16	57003172	57003172	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatatttgcaggttctgtGgattaggaggacattttggg	13	4	1	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57003172	A	A	57003172	1	1	76	0	1	0	0	0	0	0	0	0	3307	1363	47	4		4	CETP	16	57003172	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08		57003172	33351581	62	83283											
CALB2	794	broad.mit.edu	37	chr16	71405912	71405912	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatgccctgagggctggaCccacacccctagctccactg	9	17	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71405912	T	T	71405912	1	4	76	0	1	0	0	0	0	0	0	0	2600	522	18	4		4	CALB2	16	71405912	Intron	SNP	C	TCGA-17-Z047-01A-01W-0747-08	14402740	71405912	18948841	63	83284			2	66		3	3	238	N	CC_C	2.107512e-07
CALB2	794	broad.mit.edu	37	chr16	71405927	71405928	+	Intron	DNP	CC	TT	TT													ctggacccacacccctagctCcactggcctagacacctgcc							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	71405928	TT	TT	71405927	1	4	76	0	1	0	0	0	0	0	0	0	2600	870	30	4		4	CALB2	16	71405927	Intron	DNP	CC	TCGA-17-Z047-01A-01W-0747-08	15	71405927	18948826	64	83285			2	66		3	3	238	N	CC_C	2.107512e-07
CALB2	794	broad.mit.edu	37	chr16	71406149	71406149	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catggtaagcccagccctgtCtccgattgtgtgggattttc	11	11	1	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71406149	T	T	71406149	1	4	76	0	1	0	0	0	0	0	0	0	2600	928	32	4		4	CALB2	16	71406149	Intron	SNP	C	TCGA-17-Z047-01A-01W-0747-08	222	71406149	18948604	65	83286			2	66		3	3	238	N	CC_C	2.107512e-07
SGSM2	9905	broad.mit.edu	37	chr17	2270746	2270746	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctcatccccaccctcccTcccgggcccgcctgccaccc	5	27	1	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2270746	C	C	2270746	1	2	76	0	1	0	0	0	0	0	0	0	14336	1566	54	5		5	SGSM2	17	2270746	Intron	SNP	T	TCGA-17-Z047-01A-01W-0747-08		2270746	78924464	66	83287											
TP53	7157	broad.mit.edu	37	chr17	7578175	7578175	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaccccagttgcaaaccagAcctcaggcggctcatagggc	11	14	2	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578175	T	T	7578175	5	4	76	1	0	0	0	0	0	0	1	0	16505	289	10	5	620	5	TP53	17	7578175	Splice_Site	SNP	A	TCGA-17-Z047-01A-01W-0747-08	5307429	7578175	73617035	67	83288											
MYH8	4626	broad.mit.edu	37	chr17	10310138	10310138	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcccctaaaaatatagaAcagtacttattagtgggcat	7	7	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10310138	G	G	10310138	1	3	76	0	1	0	0	0	0	0	0	0	10135	58	2	5		5	MYH8	17	10310138	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08	2731963	10310138	70885072	68	83289											
CCDC144A	9720	broad.mit.edu	37	chr17	16612509	16612509	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatccatactatcatccaTactctgggtcccaggaacat	5	14	2	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16612509	A	A	16612509	3	1	76	1	0	0	0	0	1	0	0	0	2803	1406	49	5	1156	5	CCDC144A	17	16612509	Missense_Mutation	SNP	T	TCGA-17-Z047-01A-01W-0747-08	6302371	16612509	64582701	69	83290											
SCN4A	6329	broad.mit.edu	37	chr17	62049212	62049213	+	Splice_Site	INS	-	G	G													atccctgtgaaggtgtacctINSgggggggagagggccggccg							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62049213	G	G	62049212	8	5	76	1	0	1	1	0	0	0	1	0	14033	1594	55	0	5113	0	SCN4A	17	62049212	Splice_Site	INS	-	TCGA-17-Z047-01A-01W-0747-08	45436703	62049212	19145998	70	83291											
DAND5	199699	broad.mit.edu	37	chr19	13080792	13080792	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtgtaaggctgtgcccttCgttcaggtgagtgggtgggt	17	6	1	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13080792	T	T	13080792	2	4	76	1	0	0	0	0	0	0	0	1	4263	883	31	4		4	DAND5	19	13080792	Silent	SNP	C	TCGA-17-Z047-01A-01W-0747-08		13080792	46048191	71	83292											
EMR3	84658	broad.mit.edu	37	chr19	14739506	14739506	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgagatgtgagttgcaaaAactgcaatagcagactggga	12	5	0	3			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14739506	C	C	14739506	1	2	76	0	1	0	0	0	0	0	0	0	5148	29	1	5		5	EMR3	19	14739506	Intron	SNP	A	TCGA-17-Z047-01A-01W-0747-08	1658714	14739506	44389477	72	83293											
UNC13A	23025	broad.mit.edu	37	chr19	17729649	17729649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccctcccccaggatggtgGcaacctggaagccacatgag	11	15	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17729649	A	A	17729649	1	1	76	0	1	0	0	0	0	0	0	0	17110	1218	42	4		4	UNC13A	19	17729649	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08	2990143	17729649	41399334	73	83294											
MAST3	23031	broad.mit.edu	37	chr19	18248192	18248193	+	Intron	INS	-	G	G													taaggagggatccccctggaINSgggggggcggggggtgctct							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18248193	G	G	18248192	6	5	76	0	1	1	1	0	0	0	0	0	9418	319	11	0		0	MAST3	19	18248192	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08	518543	18248192	40880791	74	83295											
LGALS13	29124	broad.mit.edu	37	chr19	40094516	40094516	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacagaaaaatcatctcatCtacttgtagtcatcatagaa	5	8	5	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40094516	G	G	40094516	1	3	76	0	1	0	0	0	0	0	0	0	8812	928	32	4		4	LGALS13	19	40094516	Intron	SNP	C	TCGA-17-Z047-01A-01W-0747-08	21846324	40094516	19034467	75	83296											
SIGLEC8	27181	broad.mit.edu	37	chr19	51961677	51961677	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccagggccgccagggaacGtctgttcctcagggttcttc	13	14	3	0			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51961677	A	A	51961677	1	1	76	1	0	0	0	0	0	0	0	0	14427	1160	40	4		4	SIGLEC8	19	51961677	Translation_Start_Site	SNP	G	TCGA-17-Z047-01A-01W-0747-08	11867161	51961677	7167306	76	83297											
U2AF2	11338	broad.mit.edu	37	chr19	56185489	56185490	+	3'UTR	INS	-	C	C													ggggcttctccccactcccgINSccccccccttatccccctct							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56185490	C	C	56185489	6	5	76	0	1	1	1	0	0	0	0	0	16949	1102	38	0		0	U2AF2	19	56185489	3'UTR	INS	-	TCGA-17-Z047-01A-01W-0747-08	4223812	56185489	2943494	77	83298											
C20orf26	26074	broad.mit.edu	37	chr20	20232314	20232314	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtggtgggtagaatgacCggcatagaccgagcagccaa	15	9	0	3	rs139746792		TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20232314	T	T	20232314	2	4	76	1	0	0	0	0	0	0	0	1	2128	639	23	4		4	C20orf26	20	20232314	Silent	SNP	C	TCGA-17-Z047-01A-01W-0747-08		20232314	42793206	78	83299											
ZHX3	23051	broad.mit.edu	37	chr20	39832386	39832386	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcgacgagtggggtatttaGaaccgtaattgtgggctgag	17	5	0	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39832386	A	A	39832386	2	1	76	1	0	0	0	0	0	0	0	1	17803	933	33	4		4	ZHX3	20	39832386	Silent	SNP	G	TCGA-17-Z047-01A-01W-0747-08	19600072	39832386	23193134	79	83300											
ZHX3	23051	broad.mit.edu	37	chr20	39832734	39832734	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcactgggggctgctgctGgagggagaggaactgtgcta	18	7	0	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39832734	A	A	39832734	4	1	76	1	0	0	0	0	0	1	0	0	17803	1357	47	4	2055	4	ZHX3	20	39832734	Nonsense_Mutation	SNP	G	TCGA-17-Z047-01A-01W-0747-08	348	39832734	23192786	80	83301											
DOPEY2	9980	broad.mit.edu	37	chr21	37571345	37571346	+	Intron	INS	-	T	T													gctgccttcttcctcatgtgINSttttttttgtcttgtttgac							TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37571346	T	T	37571345	6	5	76	0	1	1	1	0	0	0	0	0	4748	1392	48	0		0	DOPEY2	21	37571345	Intron	INS	-	TCGA-17-Z047-01A-01W-0747-08		37571345	10558550	81	83302											
BMX	660	broad.mit.edu	37	chrX	15567763	15567763	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtatcagggaacatggggaaGaaaccccaggctccagaagc	13	10	1	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15567763	C	C	15567763	1	2	76	0	1	0	0	0	0	0	0	0	1479	957	33	4		4	BMX	23	15567763	Intron	SNP	G	TCGA-17-Z047-01A-01W-0747-08		15567763	139702797	82	83303											
NR0B1	190	broad.mit.edu	37	chrX	30322723	30322723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtacagagcatttccagCatcatatcatccatgctgac	6	11	2	2			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30322723	A	A	30322723	3	1	76	1	0	0	0	0	1	0	0	0	10708	710	25	3	30	3	NR0B1	23	30322723	Missense_Mutation	SNP	C	TCGA-17-Z047-01A-01W-0747-08	14754960	30322723	124947837	83	83304											
FAM47A	158724	broad.mit.edu	37	chrX	34149571	34149571	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcacaaggagcccgtgcGtcttccagcttcctctcaga	8	17	3	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34149571	A	A	34149571	2	1	76	1	0	0	0	0	0	0	0	1	5620	1136	40	4		4	FAM47A	23	34149571	Silent	SNP	G	TCGA-17-Z047-01A-01W-0747-08	3826848	34149571	121120989	84	83305											
PIM2	11040	broad.mit.edu	37	chrX	48772395	48772395	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctatcaggatgttctcaTccttgatgtcacgatggaca	10	9	4	1			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48772395	A	A	48772395	3	1	76	1	0	0	0	0	1	0	0	0	12023	1435	50	5	450	5	PIM2	23	48772395	Missense_Mutation	SNP	T	TCGA-17-Z047-01A-01W-0747-08	14622824	48772395	106498165	85	83306											
RNF207	388591	broad.mit.edu	37	chr1	6273048	6273048	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggtcgggatatttacGtggtgcctggcttgagtaaa	14	5	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6273048	A	A	6273048	1	1	77	0	1	0	0	0	0	0	0	0	13585	1160	40	4		4	RNF207	1	6273048	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08		6273048	242977573	1	83307											
HSPG2	3339	broad.mit.edu	37	chr1	22160319	22160319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacttaccttgctccagCtgatgtcaggagtggggtag	13	10	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22160319	A	A	22160319	3	1	77	1	0	0	0	0	1	0	0	0	7500	797	28	3	2435	3	HSPG2	1	22160319	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	15887271	22160319	227090302	2	83308											
ASAP3	55616	broad.mit.edu	37	chr1	23768962	23768963	+	Intron	INS	-	C	C													acaggaagacacatcccacgINSccccccctccctcatccaga							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23768963	C	C	23768962	6	5	77	0	1	1	1	0	0	0	0	0	1016	1102	38	0		0	ASAP3	1	23768962	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	1608643	23768962	225481659	3	83309											
MED8	112950	broad.mit.edu	37	chr1	43853934	43853935	+	Intron	INS	-	C	C													ctattcatcaggaggctaggINScccccccacccataagccct							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43853935	C	C	43853934	6	5	77	0	1	1	1	0	0	0	0	0	9546	1218	42	0		0	MED8	1	43853934	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	20084972	43853934	205396687	4	83310											
FAAH	2166	broad.mit.edu	37	chr1	46871356	46871356	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggggtgaaggggccctcatCgggtctggaggctcccccct	17	13	2	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46871356	T	T	46871356	2	4	77	1	0	0	0	0	0	0	0	1	5399	874	31	4		4	FAAH	1	46871356	Silent	SNP	C	TCGA-17-Z048-01A-01W-0746-08	3017422	46871356	202379265	5	83311											
MSH4	4438	broad.mit.edu	37	chr1	76363723	76363723	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaagaagcaattttgtaTacctacaaactttctaaggg	6	6	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76363723	G	G	76363723	4	3	77	1	0	0	0	0	0	1	0	0	9966	1413	49	5	2557	5	MSH4	1	76363723	Nonsense_Mutation	SNP	T	TCGA-17-Z048-01A-01W-0746-08	29492367	76363723	172886898	6	83312											
ABCA4	24	broad.mit.edu	37	chr1	94497226	94497226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagcagaatctaaagaggGtgctccttgctgagttataa	10	8	1	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94497226	A	A	94497226	1	1	77	0	1	0	0	0	0	0	0	0	34	1276	44	4		4	ABCA4	1	94497226	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	18133503	94497226	154753395	7	83313											
MYBPHL	343263	broad.mit.edu	37	chr1	109839773	109839773	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagcgctgaagccccaaaCgtccaccagcttaatactct	7	14	1	1	rs140919452		TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109839773	T	T	109839773	3	4	77	1	0	0	0	0	1	0	0	0	10109	536	19	4	615	4	MYBPHL	1	109839773	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	15342547	109839773	139410848	8	83314											
WDR77	79084	broad.mit.edu	37	chr1	111991766	111991767	+	Frame_Shift_Ins	INS	-	G	G													ccgggccgccgggggcactaINSgggggggtggggtttccttc							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111991767	G	G	111991766	7	5	77	1	0	1	1	0	0	0	0	0	17454	420	15	0	1042	0	WDR77	1	111991766	Frame_Shift_Ins	INS	-	TCGA-17-Z048-01A-01W-0746-08	2151993	111991766	137258855	9	83315											
C1orf162	128346	broad.mit.edu	37	chr1	112019290	112019291	+	Intron	INS	-	T	T													acaatgttctctcatttttgINStaagagttgcagccccatcc							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112019291	T	T	112019290	6	5	77	0	1	1	1	0	0	0	0	0	2030	1392	48	0		0	C1orf162	1	112019290	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	27524	112019290	137231331	10	83316											
C1orf183	55924	broad.mit.edu	37	chr1	112269334	112269335	+	3'UTR	DEL	CA	-	-													gccagacagacacacacatgCacacacacacacacacacgc							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112269335	-	-	112269334	6	5	77	0	1	1	0	1	0	0	0	0	2039	725	25	0		0	C1orf183	1	112269334	3'UTR	DEL	CA	TCGA-17-Z048-01A-01W-0746-08	250044	112269334	136981287	11	83317											
PDE4DIP	9659	broad.mit.edu	37	chr1	144863860	144863861	+	Intron	INS	-	T	T													tggaagcatgggaacccttcINStttttcatgtctctgatata					rs137857731		TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144863861	T	T	144863860	6	5	77	0	1	1	1	0	0	0	0	0	11737	928	32	0		0	PDE4DIP	1	144863860	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	32594526	144863860	104386761	12	83318											
DENND4B	9909	broad.mit.edu	37	chr1	153915382	153915382	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgaggttgcggggcagcCggcagtaagtatgaggagtg	20	5	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153915382	T	T	153915382	3	4	77	1	0	0	0	0	1	0	0	0	4474	652	23	4	4052	4	DENND4B	1	153915382	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	9051522	153915382	95335239	13	83319											
TPM3	7170	broad.mit.edu	37	chr1	154148674	154148674	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagcacggtccagctcTtcttcaaccagctggatcct	8	15	3	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154148674	C	C	154148674	2	2	77	1	0	0	0	0	0	0	0	1	16531	1606	56	5		5	TPM3	1	154148674	Silent	SNP	T	TCGA-17-Z048-01A-01W-0746-08	233292	154148674	95101947	14	83320											
RAG1AP1	55974	broad.mit.edu	37	chr1	155110672	155110673	+	Frame_Shift_Ins	INS	-	A	A													caggtgtccaactttccaggINSaatcgtcaccagctttatcc							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155110673	A	A	155110672	7	5	77	1	0	1	1	0	0	0	0	0	13112	1174	41	0	603	0	RAG1AP1	1	155110672	Frame_Shift_Ins	INS	-	TCGA-17-Z048-01A-01W-0746-08	961998	155110672	94139949	15	83321											
ALDH9A1	223	broad.mit.edu	37	chr1	165649549	165649549	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accccatgtgtactccctttCccccttcatacttttacagg	4	16	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165649549	T	T	165649549	1	4	77	0	1	0	0	0	0	0	0	0	506	870	30	4		4	ALDH9A1	1	165649549	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	10538877	165649549	83601072	16	83322											
C1orf26	54823	broad.mit.edu	37	chr1	185183720	185183721	+	Frame_Shift_Ins	INS	-	A	A													catgctttcagtacaaggtcINSaaattatgatggtattcttc							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185183721	A	A	185183720	7	5	77	1	0	1	1	0	0	0	0	0	2057	838	29	0	2104	0	C1orf26	1	185183720	Frame_Shift_Ins	INS	-	TCGA-17-Z048-01A-01W-0746-08	19534171	185183720	64066901	17	83323											
CYB5R1	51706	broad.mit.edu	37	chr1	202935709	202935709	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggcaaagcggaacctcTtggtgttgtggctcacagtc	14	10	2	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202935709	C	C	202935709	3	2	77	1	0	0	0	0	1	0	0	0	4159	1609	56	5	760	5	CYB5R1	1	202935709	Missense_Mutation	SNP	T	TCGA-17-Z048-01A-01W-0746-08	17751989	202935709	46314912	18	83324											
THUMPD2	80745	broad.mit.edu	37	chr2	39995681	39995681	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaaagaatactaaaaatGaaaattttaagtttaaatgt	5	1	0	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39995681	A	A	39995681	1	1	77	0	1	0	0	0	0	0	0	0	16006	1305	45	4		4	THUMPD2	2	39995681	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08		39995681	203203692	19	83325											
FBXO41	150726	broad.mit.edu	37	chr2	73491403	73491403	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggcaggcaggggcaggTaccttggagcagacacgggc	18	9	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73491403	G	G	73491403	1	3	77	0	1	0	0	0	0	0	0	0	5807	1653	57	5		5	FBXO41	2	73491403	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	33495722	73491403	169707970	20	83326											
HK2	3099	broad.mit.edu	37	chr2	75095103	75095104	+	Intron	INS	-	TA	TA													tgtattttatacccaacatgINStactcagtattaaaaggagt					rs142180635	by1000genomes	TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	75095104	TA	TA	75095103	6	5	77	0	1	1	1	0	0	0	0	0	7258	1392	48	0		0	HK2	2	75095103	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	1603700	75095103	168104270	21	83327											
C2orf55	343990	broad.mit.edu	37	chr2	99410886	99410886	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagttcgtcataacttgatGataaaatcaatctttaagtt	5	6	3	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99410886	A	A	99410886	1	1	77	0	1	0	0	0	0	0	0	0	2198	1305	45	4		4	C2orf55	2	99410886	3'UTR	SNP	G	TCGA-17-Z048-01A-01W-0746-08	24315783	99410886	143788487	22	83328											
FMNL2	114793	broad.mit.edu	37	chr2	153475342	153475342	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaagataaactcttgaCcttggactttattgcaggaa	9	6	1	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153475342	T	T	153475342	1	4	77	0	1	0	0	0	0	0	0	0	6010	522	18	4		4	FMNL2	2	153475342	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	54064456	153475342	89724031	23	83329											
HOXD8	3234	broad.mit.edu	37	chr2	176995416	176995417	+	Frame_Shift_Ins	INS	-	C	C													ggccgctgcctaccaggccgINSccccccctcctcctccgcat							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176995417	C	C	176995416	7	5	77	1	0	1	1	0	0	0	0	0	7392	1087	38	0	324	0	HOXD8	2	176995416	Frame_Shift_Ins	INS	-	TCGA-17-Z048-01A-01W-0746-08	23520074	176995416	66203957	24	83330											
STK17B	9262	broad.mit.edu	37	chr2	197008478	197008478	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactagtctcagatggaaagTatattaagtggaagatattg	10	3	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197008478	C	C	197008478	1	2	77	0	1	0	0	0	0	0	0	0	15409	1653	57	5		5	STK17B	2	197008478	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	20013062	197008478	46190895	25	83331											
SATB2	23314	broad.mit.edu	37	chr2	200246353	200246353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacatgctgatctttgcaGtgaatctatgattgacggag	12	6	2	4			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200246353	A	A	200246353	1	1	77	0	1	0	0	0	0	0	0	0	13966	1044	36	4		4	SATB2	2	200246353	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	3237875	200246353	42953020	26	83332											
AOX1	316	broad.mit.edu	37	chr2	201485727	201485727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaagaattttttcccaAttgtctggcagagactgttg	9	9	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201485727	G	G	201485727	1	3	77	0	1	0	0	0	0	0	0	0	731	116	4	5		5	AOX1	2	201485727	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	1239374	201485727	41713646	27	83333											
ADAM23	8745	broad.mit.edu	37	chr2	207429620	207429620	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaagacttcacattccGtgtctatttgactgacatgg	8	9	3	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207429620	A	A	207429620	1	1	77	0	1	0	0	0	0	0	0	0	245	1160	40	4		4	ADAM23	2	207429620	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	5943893	207429620	35769753	28	83334											
PNKD	25953	broad.mit.edu	37	chr2	219136074	219136074	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgctttcttctcatctcttCttactgaccttccttacctc	2	15	4	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219136074	G	G	219136074	1	3	77	0	1	0	0	0	0	0	0	0	12241	928	32	4		4	PNKD	2	219136074	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	11706454	219136074	24063299	29	83335											
ALPI	248	broad.mit.edu	37	chr2	233321775	233321775	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccgtgatgaaccgggccaAgcaagcaggtgagctggggc	16	11	0	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233321775	G	G	233321775	3	3	77	1	0	0	0	0	1	0	0	0	543	72	3	5	481	5	ALPI	2	233321775	Missense_Mutation	SNP	A	TCGA-17-Z048-01A-01W-0746-08	14185701	233321775	9877598	30	83336											
ARHGEF3	50650	broad.mit.edu	37	chr3	56766506	56766506	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caataatgtaatgagtggttGatatgtggacctctgtggat	12	4	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56766506	A	A	56766506	1	1	77	0	1	0	0	0	0	0	0	0	906	1305	45	4		4	ARHGEF3	3	56766506	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08		56766506	141255924	31	83337											
GPR128	84873	broad.mit.edu	37	chr3	100378799	100378799	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactgagacaatggcagggCtacgtggtttacaggagaga	14	6	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100378799	T	T	100378799	1	4	77	0	1	0	0	0	0	0	0	0	6706	812	28	4		4	GPR128	3	100378799	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	43612293	100378799	97643631	32	83338											
ECT2	1894	broad.mit.edu	37	chr3	172491875	172491875	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacatatttattatgatcTttgaggtacttctggttagc	8	5	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172491875	G	G	172491875	1	3	77	0	1	0	0	0	0	0	0	0	4941	1624	56	5		5	ECT2	3	172491875	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	72113076	172491875	25530555	33	83339											
HTR3E	285242	broad.mit.edu	37	chr3	183823030	183823030	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaactatctccttgaaaaaTgattcagatggttctcattt	6	7	3	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183823030	G	G	183823030	1	3	77	0	1	0	0	0	0	0	0	0	7518	1479	51	5		5	HTR3E	3	183823030	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	11331155	183823030	14199400	34	83340											
C1QTNF7	114905	broad.mit.edu	37	chr4	15437253	15437253	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaagacgaacactggagTgatttgttgcaaatgcacat	11	6	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15437253	G	G	15437253	1	3	77	0	1	0	0	0	0	0	0	0	1988	1711	59	5		5	C1QTNF7	4	15437253	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08		15437253	175717023	35	83341											
SLIT2	9353	broad.mit.edu	37	chr4	20555376	20555376	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgtgtgtgtgtgtgtgtGtgtatgtgtgtgtgtgtatg	17	1	0	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20555376	A	A	20555376	1	1	77	0	1	0	0	0	0	0	0	0	14854	1392	48	4		4	SLIT2	4	20555376	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	5118123	20555376	170598900	36	83342											
NFXL1	152518	broad.mit.edu	37	chr4	47853119	47853119	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgtttggttacctgttgtCttcgtttttcttcttcaaga	7	7	4	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47853119	G	G	47853119	3	3	77	1	0	0	0	0	1	0	0	0	10483	913	32	4	188	4	NFXL1	4	47853119	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	27297743	47853119	143301157	37	83343											
UGT2B4	7363	broad.mit.edu	37	chr4	70346667	70346667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatcaacattgaaagtaaGttaatttggccaggcacgga	10	6	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70346667	T	T	70346667	1	4	77	0	1	0	0	0	0	0	0	0	17087	1044	36	3		3	UGT2B4	4	70346667	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	22493548	70346667	120807609	38	83344											
WDFY3	23001	broad.mit.edu	37	chr4	85750167	85750167	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagtcttacctaagcaagaGatcacaaagaaaattatatc	6	8	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85750167	C	C	85750167	3	2	77	1	0	0	0	0	1	0	0	0	17397	942	33	4	9917	4	WDFY3	4	85750167	Missense_Mutation	SNP	G	TCGA-17-Z048-01A-01W-0746-08	15403500	85750167	105404109	39	83345											
PRSS12	8492	broad.mit.edu	37	chr4	119237574	119237574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatatcaccatattcagGcctcactctaggccttttgc	6	12	4	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119237574	T	T	119237574	1	4	77	0	1	0	0	0	0	0	0	0	12721	1218	42	3		3	PRSS12	4	119237574	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	33487407	119237574	71916702	40	83346											
MFSD8	256471	broad.mit.edu	37	chr4	128864871	128864871	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatgtcagaatgaatgtgAatatgacacaaccaaacata	6	6	1	4			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128864871	T	T	128864871	1	4	77	0	1	0	0	0	0	0	0	0	9631	261	9	5		5	MFSD8	4	128864871	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	9627297	128864871	62289405	41	83347											
NEK1	4750	broad.mit.edu	37	chr4	170498225	170498225	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttgtcctgaagctggtcTtttagctagatgaaaagata	10	5	1	4			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170498225	C	C	170498225	3	2	77	1	0	0	0	0	1	0	0	0	10416	1617	56	5	2998	5	NEK1	4	170498225	Missense_Mutation	SNP	T	TCGA-17-Z048-01A-01W-0746-08	41633354	170498225	20656051	42	83348											
FRG1	2483	broad.mit.edu	37	chr4	190864560	190864560	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaaatattacctacagttAtaaattccatttattcttta	1	7	1	0	rs77715129		TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190864560	G	G	190864560	1	3	77	0	1	0	0	0	0	0	0	0	6106	464	16	5		5	FRG1	4	190864560	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	20366335	190864560	289716	43	83349											
CLPTM1L	81037	broad.mit.edu	37	chr5	1323907	1323907	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcggcctcctacctcttAtatttgatattcaggagtga	9	9	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1323907	G	G	1323907	2	3	77	1	0	0	0	0	0	0	0	1	3587	456	16	5		5	CLPTM1L	5	1323907	Silent	SNP	A	TCGA-17-Z048-01A-01W-0746-08		1323907	179591353	44	83350											
SPEF2	79925	broad.mit.edu	37	chr5	35771702	35771702	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taactgaaatattgctgttaCgcaaccaggtggctgctgaa	10	8	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35771702	T	T	35771702	1	4	77	0	1	0	0	0	0	0	0	0	15153	551	19	4		4	SPEF2	5	35771702	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	34447795	35771702	145143558	45	83351											
C5orf42	65250	broad.mit.edu	37	chr5	37122593	37122593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgaagtcatgtaaagctGcataaaaaatacccagttgg	8	8	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37122593	T	T	37122593	1	4	77	0	1	0	0	0	0	0	0	0	2324	1334	46	3		3	C5orf42	5	37122593	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	1350891	37122593	143792667	46	83352											
FYB	2533	broad.mit.edu	37	chr5	39202820	39202820	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccagtgggctttagaaaCgggggcttgggttccttgtc	15	9	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39202820	T	T	39202820	2	4	77	1	0	0	0	0	0	0	0	1	6184	523	19	4		4	FYB	5	39202820	Silent	SNP	C	TCGA-17-Z048-01A-01W-0746-08	2080227	39202820	141712440	47	83353											
PLK2	10769	broad.mit.edu	37	chr5	57753814	57753815	+	Intron	INS	-	T	T													acattgctatgatttatagaINSttttattaccggacctctga							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57753815	T	T	57753814	6	5	77	0	1	1	1	0	0	0	0	0	12191	348	12	0		0	PLK2	5	57753814	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	18550994	57753814	123161446	48	83354											
CDK7	1022	broad.mit.edu	37	chr5	68572376	68572378	+	In_Frame_Del	DEL	AAA	-	-													ttttcttttaaaaggcactgAaaatgaagtatttcagtaat							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68572378	-	-	68572376	7	5	77	1	0	1	0	1	0	0	0	0	3179	247	9	0	913	0	CDK7	5	68572376	In_Frame_Del	DEL	AAA	TCGA-17-Z048-01A-01W-0746-08	10818562	68572376	112342884	49	83355											
GFM2	84340	broad.mit.edu	37	chr5	74034603	74034603	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaataatgtctttgttacGtaactctcttcttccattga	4	9	3	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74034603	A	A	74034603	1	1	77	0	1	0	0	0	0	0	0	0	6406	1160	40	4		4	GFM2	5	74034603	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	5462227	74034603	106880657	50	83356											
CHD1	1105	broad.mit.edu	37	chr5	98208031	98208032	+	Intron	INS	-	T	T													cttccttttttttttcaaaaINSctagccaataacaccataaa							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98208032	T	T	98208031	6	5	77	0	1	1	1	0	0	0	0	0	3354	58	2	0		0	CHD1	5	98208031	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	24173428	98208031	82707229	51	83357											
GIN1	54826	broad.mit.edu	37	chr5	102442392	102442392	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctatcagaaagacattattCataatactctaaatacataa	2	7	4	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102442392	A	A	102442392	1	1	77	0	1	0	0	0	0	0	0	0	6450	841	29	3		3	GIN1	5	102442392	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	4234361	102442392	78472868	52	83358											
PCDHGC4	56098	broad.mit.edu	37	chr5	140864939	140864939	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcgcaggctgcaggtcGctggagaggtgaaccaaaga	15	10	0	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140864939	A	A	140864939	3	1	77	1	0	0	0	0	1	0	0	0	11664	1087	38	4	201	4	PCDHGC4	5	140864939	Missense_Mutation	SNP	G	TCGA-17-Z048-01A-01W-0746-08	38422547	140864939	40050321	53	83359											
WWC1	23286	broad.mit.edu	37	chr5	167836883	167836893	+	Intron	DEL	GCCACAACAGC	-	-													cgaaacccaactcagcaccgGccacaacagccacataattc							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167836893	-	-	167836883	6	5	77	0	1	1	0	1	0	0	0	0	17538	1218	42	0		0	WWC1	5	167836883	Intron	DEL	GCCACAACAGC	TCGA-17-Z048-01A-01W-0746-08	26971944	167836883	13078377	54	83360											
KIF13A	63971	broad.mit.edu	37	chr6	17849744	17849744	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttataggaaacgagagagaGaagaaaaacttatcaataaa	9	3	1	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17849744	A	A	17849744	1	1	77	0	1	0	0	0	0	0	0	0	8344	957	33	4		4	KIF13A	6	17849744	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08		17849744	153265323	55	83361											
PIM1	5292	broad.mit.edu	37	chr6	37138693	37138694	+	Intron	INS	-	G	G													gtggggagggcgcgccgggcINSggggggcgcacgggcgtgct							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37138694	G	G	37138693	6	5	77	0	1	1	1	0	0	0	0	0	12022	783	27	0		0	PIM1	6	37138693	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	19288949	37138693	133976374	56	83362											
KCNQ5	56479	broad.mit.edu	37	chr6	73765059	73765059	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtagctgccaatagtgagGacttggcgcctcaatgagca	12	9	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73765059	A	A	73765059	1	1	77	0	1	0	0	0	0	0	0	0	8156	1189	41	4		4	KCNQ5	6	73765059	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	36626366	73765059	97350008	57	83363											
LAMA4	3910	broad.mit.edu	37	chr6	112441407	112441407	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaatggatatttctagagAgagtaatggaggcccattag	11	4	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112441407	G	G	112441407	1	3	77	0	1	0	0	0	0	0	0	0	8680	319	11	5		5	LAMA4	6	112441407	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	38676348	112441407	58673660	58	83364											
NOD1	10392	broad.mit.edu	37	chr7	30486696	30486696	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcacagccatgagacttTctggctcctgatgtcatttt	8	10	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30486696	G	G	30486696	1	3	77	0	1	0	0	0	0	0	0	0	10611	1798	62	5		5	NOD1	7	30486696	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08		30486696	128651967	59	83365											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31126495	31126495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcggagccccaggtctaCggtggacattggacatgttg	13	11	2	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31126495	T	T	31126495	1	4	77	0	1	0	0	0	0	0	0	0	303	551	19	4		4	ADCYAP1R1	7	31126495	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	639799	31126495	128012168	60	83366											
DPY19L1	23333	broad.mit.edu	37	chr7	35029641	35029641	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acataatatcataaccactgGtattatataagattttatag	4	5	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35029641	A	A	35029641	1	1	77	0	1	0	0	0	0	0	0	0	4780	1276	44	4		4	DPY19L1	7	35029641	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	3903146	35029641	124109022	61	83367											
EGFR	1956	broad.mit.edu	37	chr7	55249012	55249013	+	In_Frame_Ins	INS	-	GGGTTA	GGGTTA													acgtgatggccagcgtggacINSaacccccacgtgtgccgcct							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGGTTA	55249013	GGGTTA	GGGTTA	55249012	7	5	77	1	0	1	1	0	0	0	0	0	5007	477	17	0	2652	0	EGFR	7	55249012	In_Frame_Ins	INS	-	TCGA-17-Z048-01A-01W-0746-08	20219371	55249012	103889651	62	83368											
ZNF727	442319	broad.mit.edu	37	chr7	63538726	63538726	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagaatgtggcaaaaccttTaagtggttcccagacctgac	10	9	0	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63538726	A	A	63538726	3	1	77	1	0	0	0	0	1	0	0	0	18251	1751	61	5	1313	5	ZNF727	7	63538726	Missense_Mutation	SNP	T	TCGA-17-Z048-01A-01W-0746-08	8289714	63538726	95599937	63	83369											
KIAA1147	57189	broad.mit.edu	37	chr7	141385496	141385496	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggaattttgagatgcaatCctaaacaaaacaaatgaact	7	6	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141385496	G	G	141385496	1	3	77	0	1	0	0	0	0	0	0	0	8280	870	30	4		4	KIAA1147	7	141385496	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	77846770	141385496	17753167	64	83370											
PEBP4	157310	broad.mit.edu	37	chr8	22570877	22570877	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcccggatggcaaagccGgctatctagcaggcagctat	12	12	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22570877	T	T	22570877	1	4	77	0	1	0	0	0	0	0	0	0	11808	1131	39	1		1	PEBP4	8	22570877	3'UTR	SNP	G	TCGA-17-Z048-01A-01W-0746-08		22570877	123793145	65	83371											
PPP2CB	5516	broad.mit.edu	37	chr8	30657032	30657033	+	Intron	INS	-	A	A													tttgcctggtttaaatcttgINSaaaaaaaaattgaatttcaa							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30657033	A	A	30657032	6	5	77	0	1	1	1	0	0	0	0	0	12482	1305	45	0		0	PPP2CB	8	30657032	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	8086155	30657032	115706990	66	83372											
SNTG1	54212	broad.mit.edu	37	chr8	51664727	51664727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacattaatgccattaaggAacaaagaggggaaactttcg	9	7	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51664727	G	G	51664727	1	3	77	0	1	0	0	0	0	0	0	0	14988	261	9	5		5	SNTG1	8	51664727	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	21007695	51664727	94699295	67	83373											
GDF6	392255	broad.mit.edu	37	chr8	97156765	97156765	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttggcccaccttggttccGggccaaggcggcgggaaagg	16	13	0	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97156765	A	A	97156765	1	1	77	0	1	0	0	0	0	0	0	0	6381	1131	39	4		4	GDF6	8	97156765	3'UTR	SNP	G	TCGA-17-Z048-01A-01W-0746-08	45492038	97156765	49207257	68	83374											
CSMD3	114788	broad.mit.edu	37	chr8	113668644	113668644	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaataatgctttggactgctAtttaaattcctatttaaaat	4	5	0	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113668644	T	T	113668644	1	4	77	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113668644	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	16511879	113668644	32695378	69	83375											
UHRF2	115426	broad.mit.edu	37	chr9	6504589	6504589	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttatccttggatactgttCtagaattttctgaaaaaatt	5	7	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6504589	G	G	6504589	1	3	77	0	1	0	0	0	0	0	0	0	17096	928	32	4		4	UHRF2	9	6504589	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08		6504589	134708842	70	83376											
TLE1	7088	broad.mit.edu	37	chr9	84202824	84202824	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgttagttttggaccgTgtgtgtgtgtgtgtgtgtgt	17	2	0	0	rs5898747		TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84202824	C	C	84202824	1	2	77	0	1	0	0	0	0	0	0	0	16061	1711	59	5		5	TLE1	9	84202824	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	77698235	84202824	57010607	71	83377											
PTCH1	5727	broad.mit.edu	37	chr9	98242639	98242639	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagtgttttgctctccAcccttctgagagcgctcact	7	12	3	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98242639	C	C	98242639	1	2	77	0	1	0	0	0	0	0	0	0	12836	174	6	5		5	PTCH1	9	98242639	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	14039815	98242639	42970792	72	83378											
GAD2	2572	broad.mit.edu	37	chr10	26581848	26581848	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagcctcagcacacaaatgtCtgcttctggtacattcctcc	6	14	3	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26581848	A	A	26581848	2	1	77	1	0	0	0	0	0	0	0	1	6240	900	32	3		3	GAD2	10	26581848	Silent	SNP	C	TCGA-17-Z048-01A-01W-0746-08		26581848	108952899	73	83379											
GRID1	2894	broad.mit.edu	37	chr10	87898880	87898880	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgttccacccatgcaggccAccacgaaaaatgagggtcca	9	14	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87898880	G	G	87898880	1	3	77	0	1	0	0	0	0	0	0	0	6837	174	6	5		5	GRID1	10	87898880	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	61317032	87898880	47635867	74	83380											
TEAD1	7003	broad.mit.edu	37	chr11	12903639	12903639	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctgacttgcaggatcctTgggtagcctgtagctcagga	12	12	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12903639	G	G	12903639	1	3	77	0	1	0	0	0	0	0	0	0	15860	1827	63	5		5	TEAD1	11	12903639	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08		12903639	122102877	75	83381											
OR5D13	390142	broad.mit.edu	37	chr11	55541050	55541050	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgtagtggggaacttggGcatgataataatcatcagac	11	7	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55541050	C	C	55541050	3	2	77	1	0	0	0	0	1	0	0	0	11248	1203	42	4	139	4	OR5D13	11	55541050	Missense_Mutation	SNP	G	TCGA-17-Z048-01A-01W-0746-08	42637411	55541050	79465466	76	83382											
VWCE	220001	broad.mit.edu	37	chr11	61036549	61036549	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccggcccctgcctccccGccctgcaaaagaaacagcaa	7	19	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61036549	A	A	61036549	1	1	77	0	1	0	0	0	0	0	0	0	17372	1102	38	4		4	VWCE	11	61036549	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	5495499	61036549	73969967	77	83383											
CD3G	917	broad.mit.edu	37	chr11	118222218	118222218	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcactcaacaacatgtttaTgtgctttatccatactcttg	4	10	3	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118222218	G	G	118222218	1	3	77	0	1	0	0	0	0	0	0	0	3043	1479	51	5		5	CD3G	11	118222218	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	57185669	118222218	16784298	78	83384											
UBASH3B	84959	broad.mit.edu	37	chr11	122667011	122667011	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggtgggcctgctcagcActgccatacccatagtggcc	13	13	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122667011	C	C	122667011	1	2	77	0	1	0	0	0	0	0	0	0	16966	174	6	5		5	UBASH3B	11	122667011	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	4444793	122667011	12339505	79	83385											
PHB2	11331	broad.mit.edu	37	chr12	7075045	7075045	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactggagaaggtggcctgcAggaccccacagaagcaacaa	12	11	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7075045	G	G	7075045	1	3	77	0	1	0	0	0	0	0	0	0	11910	203	7	5		5	PHB2	12	7075045	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08		7075045	126776850	80	83386											
DDX11	1663	broad.mit.edu	37	chr12	31256447	31256447	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggggagggggtcgccGtgggaatgtgctgtaggggg	24	4	0	0	rs3903164		TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31256447	A	A	31256447	1	1	77	0	1	0	0	0	0	0	0	0	4376	1160	40	4		4	DDX11	12	31256447	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	24181402	31256447	102595448	81	83387											
KRT77	374454	broad.mit.edu	37	chr12	53085664	53085664	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgctggccacctcctGgccctccctccacccagcac	6	22	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53085664	A	A	53085664	1	1	77	0	1	0	0	0	0	0	0	0	8561	1363	47	4		4	KRT77	12	53085664	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	21829217	53085664	80766231	82	83388											
MYO1A	4640	broad.mit.edu	37	chr12	57424944	57424944	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattgttcttcagccccagTaggaatttctgtacctagtt	7	9	3	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57424944	C	C	57424944	2	2	77	1	0	0	0	0	0	0	0	1	10162	1625	57	5		5	MYO1A	12	57424944	Silent	SNP	T	TCGA-17-Z048-01A-01W-0746-08	4339280	57424944	76426951	83	83389											
RXFP2	122042	broad.mit.edu	37	chr13	32360397	32360397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgtgtaacaagttatcAggttggttaaattggattca	10	4	2	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32360397	T	T	32360397	1	4	77	0	1	0	0	0	0	0	0	0	13871	203	7	5		5	RXFP2	13	32360397	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08		32360397	82809481	84	83390											
ALG5	29880	broad.mit.edu	37	chr13	37539912	37539912	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttccattcatctgtaaagGagacactgaaaacacctggc	7	10	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37539912	A	A	37539912	1	1	77	0	1	0	0	0	0	0	0	0	521	1189	41	4		4	ALG5	13	37539912	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	5179515	37539912	77629966	85	83391											
MBNL2	10150	broad.mit.edu	37	chr13	97999179	97999179	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtaaccgtttgtatggattAcataaaggggcgttgcatga	12	6	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97999179	G	G	97999179	3	3	77	1	0	0	0	0	1	0	0	0	9447	391	14	5	676	5	MBNL2	13	97999179	Missense_Mutation	SNP	A	TCGA-17-Z048-01A-01W-0746-08	60459267	97999179	17170699	86	83392											
AKAP6	9472	broad.mit.edu	37	chr14	32902910	32902910	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaagattgtcctccacttaCctgaaattgagacctggctc	9	11	0	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32902910	G	G	32902910	3	3	77	1	0	0	0	0	1	0	0	0	455	507	18	4	213	4	AKAP6	14	32902910	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08		32902910	74446630	87	83393											
SYT16	83851	broad.mit.edu	37	chr14	62551035	62551035	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctcgtacaatgccacaaCggggcgattatctgtggaaa	11	10	2	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62551035	T	T	62551035	3	4	77	1	0	0	0	0	1	0	0	0	15591	536	19	4	1574	4	SYT16	14	62551035	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	29648125	62551035	44798505	88	83394											
GALNTL1	57452	broad.mit.edu	37	chr14	69806341	69806342	+	Intron	INS	-	C	C													gaaggccttcggcaggtgggINScccccccagctccactgtct							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69806342	C	C	69806341	6	5	77	0	1	1	1	0	0	0	0	0	6283	1218	42	0		0	GALNTL1	14	69806341	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	7255306	69806341	37543199	89	83395											
KCNK10	54207	broad.mit.edu	37	chr14	88789170	88789170	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcccagaaggggaagaaaTgaaaagaacccaaataataa	9	6	0	4			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88789170	C	C	88789170	1	2	77	0	1	0	0	0	0	0	0	0	8129	1479	51	5		5	KCNK10	14	88789170	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	18982829	88789170	18560370	90	83396											
TUBGCP5	114791	broad.mit.edu	37	chr15	22868967	22868967	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgctgagagaaaagGtacatgagatgtctcctgca	13	7	2	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22868967	C	C	22868967	5	2	77	1	0	0	0	0	0	0	1	0	16895	1275	44	4	2917	4	TUBGCP5	15	22868967	Splice_Site	SNP	G	TCGA-17-Z048-01A-01W-0746-08		22868967	79662425	91	83397											
HERC2	8924	broad.mit.edu	37	chr15	28386775	28386775	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagtccagtcatctggtcGcctacaatacacatcaagtg	9	11	3	1	rs149707599	byFrequency;by1000genomes	TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28386775	A	A	28386775	4	1	77	1	0	0	0	0	0	1	0	0	7125	1101	38	4	2750	4	HERC2	15	28386775	Nonsense_Mutation	SNP	G	TCGA-17-Z048-01A-01W-0746-08	5517808	28386775	74144617	92	83398											
DISP2	85455	broad.mit.edu	37	chr15	40660420	40660420	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcggcgtcatcaagttcCgctacatctggatctgctgg	11	13	4	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40660420	G	G	40660420	3	3	77	1	0	0	0	0	1	0	0	0	4580	652	23	4	2137	4	DISP2	15	40660420	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	12273645	40660420	61870972	93	83399											
CDAN1	146059	broad.mit.edu	37	chr15	43025477	43025477	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccgtagcccacccaccaccTtttttttttttggagatgga	7	12	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43025477	C	C	43025477	1	2	77	0	1	0	0	0	0	0	0	0	3084	1624	56	5		5	CDAN1	15	43025477	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	2365057	43025477	59505915	94	83400											
ITGA11	22801	broad.mit.edu	37	chr15	68620499	68620499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaggaaggcggccaggCaggtggcatccctgccactg	16	12	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68620499	A	A	68620499	3	1	77	1	0	0	0	0	1	0	0	0	7944	710	25	3	1623	3	ITGA11	15	68620499	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	25595022	68620499	33910893	95	83401											
SH2D7	646892	broad.mit.edu	37	chr15	78393869	78393869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgaacagatcccagcaaCcaagagcaaggagactggac	10	11	0	4			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78393869	A	A	78393869	3	1	77	1	0	0	0	0	1	0	0	0	14352	507	18	3	1292	3	SH2D7	15	78393869	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	9773370	78393869	24137523	96	83402											
CHRNB4	1143	broad.mit.edu	37	chr15	78921215	78921215	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtttgagagtccttgTctcctatgaattaactgcag	9	8	2	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78921215	C	C	78921215	1	2	77	0	1	0	0	0	0	0	0	0	3424	1682	58	5		5	CHRNB4	15	78921215	Intron	SNP	T	TCGA-17-Z048-01A-01W-0746-08	527346	78921215	23610177	97	83403											
PLIN1	5346	broad.mit.edu	37	chr15	90220836	90220836	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caactaggcccaggctgcctGggggcccatttgccctgaac	12	15	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90220836	C	C	90220836	1	2	77	0	1	0	0	0	0	0	0	0	12184	1363	47	4		4	PLIN1	15	90220836	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	11299621	90220836	12310556	98	83404											
IQCK	124152	broad.mit.edu	37	chr16	19729765	19729769	+	Frame_Shift_Del	DEL	TCACC	-	-													gcctgtctcgtcgtggcaggTcaccgagccgtcaagcaaga					rs150132758	byFrequency	TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19729769	-	-	19729765	7	5	77	1	0	1	0	1	0	0	0	0	7883	1667	58	0	139	0	IQCK	16	19729765	Frame_Shift_Del	DEL	TCACC	TCGA-17-Z048-01A-01W-0746-08		19729765	70624988	99	83405											
MYST1	84148	broad.mit.edu	37	chr16	31141192	31141192	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccagttccctgttcgtcaGaggctgaccgaagactcctt	9	13	1	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31141192	C	C	31141192	1	2	77	0	1	0	0	0	0	0	0	0	10196	957	33	4		4	MYST1	16	31141192	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	11411427	31141192	59213561	100	83406											
MYST1	84148	broad.mit.edu	37	chr16	31141706	31141706	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggttcctggcctgtctggGagggggagacctgtggggca	20	8	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31141706	T	T	31141706	1	4	77	0	1	0	0	0	0	0	0	0	10196	1189	41	3		3	MYST1	16	31141706	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	514	31141706	59213047	101	83407											
COQ9	57017	broad.mit.edu	37	chr16	57493630	57493630	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgggccacactgccaagCaggtaggtggggactagcca	14	11	0	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57493630	T	T	57493630	4	4	77	1	0	0	0	0	0	1	0	0	3783	711	25	4	891	4	COQ9	16	57493630	Nonsense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	26351924	57493630	32861123	102	83408											
PRSS54	221191	broad.mit.edu	37	chr16	58314362	58314362	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcgtgaatgcgtgatggtCcttctttgtccctgcaagta	11	9	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58314362	T	T	58314362	2	4	77	1	0	0	0	0	0	0	0	1	12739	854	30	4		4	PRSS54	16	58314362	Silent	SNP	C	TCGA-17-Z048-01A-01W-0746-08	820732	58314362	32040391	103	83409											
NAE1	8883	broad.mit.edu	37	chr16	66847735	66847735	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcattaaatatatcttcAatactgcttgggatctaaca	4	8	5	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66847735	T	T	66847735	2	4	77	1	0	0	0	0	0	0	0	1	10233	126	5	5		5	NAE1	16	66847735	Silent	SNP	A	TCGA-17-Z048-01A-01W-0746-08	8533373	66847735	23507018	104	83410											
PKD1L2	114780	broad.mit.edu	37	chr16	81222467	81222467	+	Intron	DEL	G	-	-													caaaaaaaaaaaaaaaaaaaGaactctattgtcacctacca					rs115917981	by1000genomes	TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81222467	-	-	81222467	6	5	77	0	1	1	0	1	0	0	0	0	12060	957	33	0		0	PKD1L2	16	81222467	Intron	DEL	G	TCGA-17-Z048-01A-01W-0746-08	14374732	81222467	9132286	105	83411											
ATP2C2	9914	broad.mit.edu	37	chr16	84459320	84459320	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtgcatatggagataaggAtgtttttgtctcttccccag	10	7	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84459320	C	C	84459320	1	2	77	0	1	0	0	0	0	0	0	0	1148	348	12	5		5	ATP2C2	16	84459320	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08	3236853	84459320	5895433	106	83412											
MYH2	4620	broad.mit.edu	37	chr17	10432554	10432554	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcttgctttgcagattgctGatttcaaactctttcctttt	5	9	3	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10432554	A	A	10432554	2	1	77	1	0	0	0	0	0	0	0	1	10129	1280	45	4		4	MYH2	17	10432554	Silent	SNP	G	TCGA-17-Z048-01A-01W-0746-08		10432554	70762656	107	83413											
CDRT1	374286	broad.mit.edu	37	chr17	15522904	15522904	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacactagaggaacggggggAaatgaataaataccccagtt	11	7	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15522904	G	G	15522904	1	3	77	0	1	0	0	0	0	0	0	0	3204	261	9	5		5	CDRT1	17	15522904	5'UTR	SNP	A	TCGA-17-Z048-01A-01W-0746-08	5090350	15522904	65672306	108	83414											
MED24	9862	broad.mit.edu	37	chr17	38183505	38183506	+	Intron	INS	-	G	G													ctacggactccagcccgggtINSgggcacctggtttctgaggc					rs144546030	by1000genomes	TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38183506	G	G	38183505	6	5	77	0	1	1	1	0	0	0	0	0	9535	1711	59	0		0	MED24	17	38183505	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08	22660601	38183505	43011705	109	83415											
KRT35	3886	broad.mit.edu	37	chr17	39637451	39637451	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatatctctgccccagtgggCattggttggcctttacaaag	10	10	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39637451	T	T	39637451	1	4	77	0	1	0	0	0	0	0	0	0	8543	725	25	4		4	KRT35	17	39637451	5'Flank	SNP	C	TCGA-17-Z048-01A-01W-0746-08	1453946	39637451	41557759	110	83416											
SLC25A39	51629	broad.mit.edu	37	chr17	42397542	42397542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtccgccatgcccccaCccccgacacccacacactga	7	22	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42397542	A	A	42397542	1	1	77	0	1	0	0	0	0	0	0	0	14617	522	18	3		3	SLC25A39	17	42397542	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	2760091	42397542	38797668	111	83417											
SLC9A3R1	9368	broad.mit.edu	37	chr17	72745205	72745205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaggagacccaccagCaggtggtgagccgcatccgc	15	12	0	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72745205	A	A	72745205	3	1	77	1	0	0	0	0	1	0	0	0	14828	711	25	3	222	3	SLC9A3R1	17	72745205	Missense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	30347663	72745205	8450005	112	83418											
LGALS3BP	3959	broad.mit.edu	37	chr17	76970757	76970757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcctccgcagggaggtgCgcccccgctcaccattggtg	16	15	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76970757	A	A	76970757	1	1	77	0	1	0	0	0	0	0	0	0	8816	783	27	3		3	LGALS3BP	17	76970757	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	4225552	76970757	4224453	113	83419											
PIK3C3	5289	broad.mit.edu	37	chr18	39629470	39629470	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtttgcatttgttttcacAtattttttttaactgttact	5	5	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39629470	G	G	39629470	1	3	77	0	1	0	0	0	0	0	0	0	12007	232	8	5		5	PIK3C3	18	39629470	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08		39629470	38447778	114	83420											
UNC13A	23025	broad.mit.edu	37	chr19	17743623	17743623	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgcggtccttgaaggcGggaagttccgtcacatactc	13	12	1	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17743623	A	A	17743623	2	1	77	1	0	0	0	0	0	0	0	1	17110	1103	39	4		4	UNC13A	19	17743623	Silent	SNP	G	TCGA-17-Z048-01A-01W-0746-08		17743623	41385360	115	83421											
ZNF813	126017	broad.mit.edu	37	chr19	53983553	53983553	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggctagaggctgagaaCctttgcaaacaacatttaag	11	8	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53983553	T	T	53983553	1	4	77	0	1	0	0	0	0	0	0	0	18304	522	18	4		4	ZNF813	19	53983553	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	36239930	53983553	5145430	116	83422											
VSTM1	284415	broad.mit.edu	37	chr19	54544965	54544965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtatgggcttaaccaGgaggcacacacgaccagccc	10	13	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54544965	T	T	54544965	1	4	77	0	1	0	0	0	0	0	0	0	17355	1015	35	2		2	VSTM1	19	54544965	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	561412	54544965	4584018	117	83423											
NLRP9	338321	broad.mit.edu	37	chr19	56249181	56249181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacctggcaatgcagacaCtaactggccactcatctcct	7	14	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56249181	A	A	56249181	1	1	77	0	1	0	0	0	0	0	0	0	10579	580	20	3		3	NLRP9	19	56249181	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	1704216	56249181	2879802	118	83424											
SIRPB1	10326	broad.mit.edu	37	chr20	1552414	1552414	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacgaagagggtccccctGcaaggtgatgtgggctatct	13	12	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1552414	C	C	1552414	3	2	77	1	0	0	0	0	1	0	0	0	14446	1328	46	4	505	4	SIRPB1	20	1552414	Missense_Mutation	SNP	G	TCGA-17-Z048-01A-01W-0746-08		1552414	61473106	119	83425											
ACSS1	84532	broad.mit.edu	37	chr20	25038481	25038481	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcccagacggtgtggtaGggggtgtcccacacgagagt	16	10	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25038481	C	C	25038481	2	2	77	1	0	0	0	0	0	0	0	1	188	987	35	4		4	ACSS1	20	25038481	Silent	SNP	G	TCGA-17-Z048-01A-01W-0746-08	23486067	25038481	37987039	120	83426											
KIF3B	9371	broad.mit.edu	37	chr20	30898037	30898037	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatctaccaggaggagatcCgagatttgctctcaaaggat	11	8	2	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30898037	T	T	30898037	4	4	77	1	0	0	0	0	0	1	0	0	8371	644	23	4	459	4	KIF3B	20	30898037	Nonsense_Mutation	SNP	C	TCGA-17-Z048-01A-01W-0746-08	5859556	30898037	32127483	121	83427											
SLC12A5	57468	broad.mit.edu	37	chr20	44665492	44665492	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtggaaggagggatagtgCcctgggctttgggggacatc	20	6	0	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44665492	T	T	44665492	1	4	77	0	1	0	0	0	0	0	0	0	14499	754	26	4		4	SLC12A5	20	44665492	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	13767455	44665492	18360028	122	83428											
SETD4	54093	broad.mit.edu	37	chr21	37418122	37418122	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgcacgtgggctctctGctcttcagcctttgctttta	8	14	3	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37418122	A	A	37418122	4	1	77	1	0	0	0	0	0	1	0	0	14246	1328	46	4	885	4	SETD4	21	37418122	Nonsense_Mutation	SNP	G	TCGA-17-Z048-01A-01W-0746-08		37418122	10711773	123	83429											
BRWD1	54014	broad.mit.edu	37	chr21	40608649	40608649	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgacgacatgatgttcttaAaggaggctgcaaattgatgc	11	7	1	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40608649	C	C	40608649	3	2	77	1	0	0	0	0	1	0	0	0	1534	11	1	5	4643	5	BRWD1	21	40608649	Missense_Mutation	SNP	A	TCGA-17-Z048-01A-01W-0746-08	3190527	40608649	7521246	124	83430											
ZNF295	49854	broad.mit.edu	37	chr21	43412010	43412010	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccttgctctaggagagaaGagagcttagcattacagagg	12	7	1	3			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43412010	C	C	43412010	3	2	77	1	0	0	0	0	1	0	0	0	17953	942	33	4	1009	4	ZNF295	21	43412010	Missense_Mutation	SNP	G	TCGA-17-Z048-01A-01W-0746-08	2803361	43412010	4717885	125	83431											
PI4KA	5297	broad.mit.edu	37	chr22	21193032	21193033	+	Intron	INS	-	C	C													tttggacctagaaaatgagaINScccccccaaaaacagctcta							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21193033	C	C	21193032	6	5	77	0	1	1	1	0	0	0	0	0	11968	290	10	0		0	PI4KA	22	21193032	Intron	INS	-	TCGA-17-Z048-01A-01W-0746-08		21193032	30111534	126	83432											
MYO18B	84700	broad.mit.edu	37	chr22	26219697	26219697	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcccccctctgggccagctCctggggatacaccagcattc	11	17	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26219697	G	G	26219697	1	3	77	0	1	0	0	0	0	0	0	0	10160	870	30	4		4	MYO18B	22	26219697	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	5026665	26219697	25084869	127	83433											
HMOX1	3162	broad.mit.edu	37	chr22	35789561	35789561	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acactcagctttctggtggcGacagttgctgtagggcttta	12	9	2	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35789561	A	A	35789561	2	1	77	1	0	0	0	0	0	0	0	1	7310	1045	37	4		4	HMOX1	22	35789561	Silent	SNP	G	TCGA-17-Z048-01A-01W-0746-08	9569864	35789561	15515005	128	83434											
C22orf33	339669	broad.mit.edu	37	chr22	37387504	37387504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtccctgcctcccatcacCcgcagctcctcacttaccca	4	22	2	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37387504	A	A	37387504	1	1	77	0	1	0	0	0	0	0	0	0	2167	638	22	2		2	C22orf33	22	37387504	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	1597943	37387504	13917062	129	83435											
ADSL	158	broad.mit.edu	37	chr22	40755047	40755047	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatgaccataaggtattctGaaagtgacctgcaggacaca	10	8	1	4			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40755047	A	A	40755047	1	1	77	0	1	0	0	0	0	0	0	0	346	1305	45	4		4	ADSL	22	40755047	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	3367543	40755047	10549519	130	83436											
CDKL5	6792	broad.mit.edu	37	chrX	18621996	18621996	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagctattgagggaaactgAtatacttcttttgtttttaa	7	5	2	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18621996	T	T	18621996	1	4	77	0	1	0	0	0	0	0	0	0	3187	348	12	5		5	CDKL5	23	18621996	Intron	SNP	A	TCGA-17-Z048-01A-01W-0746-08		18621996	136648564	131	83437											
MED12	9968	broad.mit.edu	37	chrX	70346752	70346752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccttgccagcgtccccaCaggaaggtggtttctatgta	11	12	1	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346752	A	A	70346752	1	1	77	0	1	0	0	0	0	0	0	0	9521	493	17	3		3	MED12	23	70346752	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	51724756	70346752	84923808	132	83438											
TBX22	50945	broad.mit.edu	37	chrX	79281063	79281063	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaacagctcccagctttGgcctgctgcacctaatgcca	7	16	0	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79281063	A	A	79281063	1	1	77	0	1	0	0	0	0	0	0	0	15780	1363	47	4		4	TBX22	23	79281063	Intron	SNP	G	TCGA-17-Z048-01A-01W-0746-08	8934311	79281063	75989497	133	83439											
TRMT2B	79979	broad.mit.edu	37	chrX	100296294	100296294	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggggtaaagacttaggCtgggcacctaccttgagctg	15	8	0	2			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100296294	T	T	100296294	1	4	77	0	1	0	0	0	0	0	0	0	16691	812	28	4		4	TRMT2B	23	100296294	Intron	SNP	C	TCGA-17-Z048-01A-01W-0746-08	21015231	100296294	54974266	134	83440											
PAK3	5063	broad.mit.edu	37	chrX	110435186	110435186	+	Intron	DEL	T	-	-													aagagggtagatcgcctgtgTttttttttaatcacaataat							TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110435186	-	-	110435186	6	5	77	0	1	1	0	1	0	0	0	0	11496	1740	60	0		0	PAK3	23	110435186	Intron	DEL	T	TCGA-17-Z048-01A-01W-0746-08	10138892	110435186	44835374	135	83441											
SPANXE	171489	broad.mit.edu	37	chrX	140786783	140786783	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccactccctgggcttgCgggcgaggggtggcaggggt	19	11	0	1			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140786783	T	T	140786783	1	4	77	0	1	0	0	0	0	0	0	0	15105	783	27	4		4	SPANXE	23	140786783	5'Flank	SNP	C	TCGA-17-Z048-01A-01W-0746-08	30351597	140786783	14483777	136	83442											
FAM58A	92002	broad.mit.edu	37	chrX	152860004	152860004	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagttccccagtatgtaCcttgtgtggatgctggaagg	12	10	0	0			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152860004	A	A	152860004	5	1	77	1	0	0	0	0	0	0	1	0	5641	521	18	3	328	3	FAM58A	23	152860004	Splice_Site	SNP	C	TCGA-17-Z048-01A-01W-0746-08	12073221	152860004	2410556	137	83443											
ATAD3C	219293	broad.mit.edu	37	chr1	1391282	1391282	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccaccaggcaccgggaagAcgctgtttgccaaggtgaga	15	11	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1391282	G	G	1391282	3	3	78	1	0	0	0	0	1	0	0	0	1079	275	10	5	572	5	ATAD3C	1	1391282	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08		1391282	247859339	1	83444											
SKI	6497	broad.mit.edu	37	chr1	2234292	2234292	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggaatctgccttctgcGccactcagggtcgtttgtgg	12	13	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2234292	A	A	2234292	1	1	78	0	1	0	0	0	0	0	0	0	14470	1102	38	4		4	SKI	1	2234292	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	843010	2234292	247016329	2	83445											
PLCH2	9651	broad.mit.edu	37	chr1	2428372	2428372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccagcagcagctctcccGcatctacccctcctcctacc	4	22	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2428372	T	T	2428372	3	4	78	1	0	0	0	0	1	0	0	0	12133	1087	38	3	2097	3	PLCH2	1	2428372	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	194080	2428372	246822249	3	83446											
CHD5	26038	broad.mit.edu	37	chr1	6204242	6204242	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacggtgaacagatgtgggtCgctcagagcagtggccacag	15	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6204242	G	G	6204242	1	3	78	0	1	0	0	0	0	0	0	0	3359	899	31	4		4	CHD5	1	6204242	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3775870	6204242	243046379	4	83447											
KLHL21	9903	broad.mit.edu	37	chr1	6653360	6653360	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccttgtgcacaaaggaGtggggcactgccccgcagag	15	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6653360	C	C	6653360	1	2	78	0	1	0	0	0	0	0	0	0	8447	1044	36	4		4	KLHL21	1	6653360	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	449118	6653360	242597261	5	83448											
KIF1B	23095	broad.mit.edu	37	chr1	10338104	10338104	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaatgaggaccccaatgcCaaactggttcgtgaattaaa	8	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10338104	T	T	10338104	2	4	78	1	0	0	0	0	0	0	0	1	8354	581	21	4		4	KIF1B	1	10338104	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3684744	10338104	238912517	6	83449											
PTCHD2	57540	broad.mit.edu	37	chr1	11590022	11590022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattggagacccggtacgGggcatgcgtcgggcagatgc	17	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11590022	T	T	11590022	1	4	78	0	1	0	0	0	0	0	0	0	12839	1247	43	2		2	PTCHD2	1	11590022	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1251918	11590022	237660599	7	83450											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12266694	12266694	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggtctcggctcctggccCagtgctctttcccatgtgtc	10	15	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12266694	T	T	12266694	1	4	78	0	1	0	0	0	0	0	0	0	16417	609	21	4		4	TNFRSF1B	1	12266694	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	676672	12266694	236983927	8	83451											
VPS13D	55187	broad.mit.edu	37	chr1	12304475	12304475	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagcactacttcaagcCctggaggagaaatggaaggc	12	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12304475	T	T	12304475	2	4	78	1	0	0	0	0	0	0	0	1	17319	610	22	4		4	VPS13D	1	12304475	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	37781	12304475	236946146	9	83452											
CELA2A	63036	broad.mit.edu	37	chr1	15789878	15789878	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgcctccacactcaccCaggaacgacattgccctgct	7	18	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15789878	T	T	15789878	1	4	78	0	1	0	0	0	0	0	0	0	3241	609	21	4		4	CELA2A	1	15789878	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3485403	15789878	233460743	10	83453											
DNAJC16	23341	broad.mit.edu	37	chr1	15888598	15888598	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataggtgctggccctgccatCagggattggttataaagttt	12	7	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15888598	T	T	15888598	1	4	78	0	1	0	0	0	0	0	0	0	4675	841	29	4		4	DNAJC16	1	15888598	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	98720	15888598	233362023	11	83454											
ATP13A2	23400	broad.mit.edu	37	chr1	17323049	17323049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgagggcaggccttcccCacccctagccctcccgaccc	11	20	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17323049	A	A	17323049	1	1	78	0	1	0	0	0	0	0	0	0	1128	609	21	2		2	ATP13A2	1	17323049	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1434451	17323049	231927572	12	83455											
KIF17	57576	broad.mit.edu	37	chr1	20998340	20998340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcttctacacccacagcCtgcaaggagaggcccacact	9	15	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20998340	A	A	20998340	1	1	78	0	1	0	0	0	0	0	0	0	8349	696	24	2		2	KIF17	1	20998340	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3675291	20998340	228252281	13	83456											
ECE1	1889	broad.mit.edu	37	chr1	21548107	21548107	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctctctaatgacagggcaCatgtgctgtgcacagtccag	10	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21548107	G	G	21548107	1	3	78	0	1	0	0	0	0	0	0	0	4929	493	17	4		4	ECE1	1	21548107	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	549767	21548107	227702514	14	83457											
CELA3B	23436	broad.mit.edu	37	chr1	22310714	22310714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagacaagctgcaggagGccctgctgccggtggtggac	15	13	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22310714	T	T	22310714	3	4	78	1	0	0	0	0	1	0	0	0	3244	1203	42	3	554	3	CELA3B	1	22310714	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	762607	22310714	226939907	15	83458											
CELA3A	10136	broad.mit.edu	37	chr1	22328342	22328342	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtctcagcttgtacccggGggcatgactgtaggggcttt	16	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22328342	C	C	22328342	1	2	78	0	1	0	0	0	0	0	0	0	3243	1247	43	4		4	CELA3A	1	22328342	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	17628	22328342	226922279	16	83459											
MYOM3	127294	broad.mit.edu	37	chr1	24384188	24384188	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagcatttgctttcatgccCccagagagctcccagctcag	8	14	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24384188	T	T	24384188	1	4	78	0	1	0	0	0	0	0	0	0	10187	638	22	4		4	MYOM3	1	24384188	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2055846	24384188	224866433	17	83460											
MAN1C1	57134	broad.mit.edu	37	chr1	26110047	26110047	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgcaaggctccagaccttGaccataggcctatcacaaag	9	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26110047	C	C	26110047	1	2	78	0	1	0	0	0	0	0	0	0	9305	1305	45	4		4	MAN1C1	1	26110047	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1725859	26110047	223140574	18	83461											
SEPN1	57190	broad.mit.edu	37	chr1	26142277	26142277	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtggtcctcagcccatttCagactgcagatgccgcccac	10	15	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26142277	A	A	26142277	1	1	78	0	1	0	0	0	0	0	0	0	14169	841	29	3		3	SEPN1	1	26142277	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	32230	26142277	223108344	19	83462											
AIM1L	55057	broad.mit.edu	37	chr1	26669332	26669332	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtctccttcaggcaggacCagcttctgaccccggaactc	9	15	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26669332	T	T	26669332	1	4	78	0	1	0	0	0	0	0	0	0	431	609	21	4		4	AIM1L	1	26669332	5'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	527055	26669332	222581289	20	83463											
RPS6KA1	6195	broad.mit.edu	37	chr1	26881587	26881587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctgactgggaggaggcGggaggtgtgtcggagacagg	23	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881587	T	T	26881587	1	4	78	0	1	0	0	0	0	0	0	0	13761	1131	39	1		1	RPS6KA1	1	26881587	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	212255	26881587	222369034	21	83464											
PHACTR4	65979	broad.mit.edu	37	chr1	28733891	28733891	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgatggactatatgtattaAgtgtatcatttacctttttc	7	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28733891	T	T	28733891	1	4	78	0	1	0	0	0	0	0	0	0	11907	87	3	5		5	PHACTR4	1	28733891	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1852304	28733891	220516730	22	83465											
GMEB1	10691	broad.mit.edu	37	chr1	29040746	29040746	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccactgtcttgagcccttctCctcctgtccagcagcctcag	7	18	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29040746	T	T	29040746	3	4	78	1	0	0	0	0	1	0	0	0	6551	855	30	4	1217	4	GMEB1	1	29040746	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	306855	29040746	220209875	23	83466											
PUM1	9698	broad.mit.edu	37	chr1	31468271	31468271	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggagacagacatacatttAtgttacagagttcagaacag	10	6	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31468271	T	T	31468271	1	4	78	0	1	0	0	0	0	0	0	0	12933	464	16	5		5	PUM1	1	31468271	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2427525	31468271	217782350	24	83467											
COL16A1	1307	broad.mit.edu	37	chr1	32156632	32156632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggacaggacgctccccgCcaaggggcctggccaagccg	16	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32156632	A	A	32156632	1	1	78	0	1	0	0	0	0	0	0	0	3705	754	26	3		3	COL16A1	1	32156632	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	688361	32156632	217093989	25	83468											
COL16A1	1307	broad.mit.edu	37	chr1	32163953	32163953	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtaggtactggtgggcTggggacaggcttgagggtag	21	4	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32163953	A	A	32163953	1	1	78	0	1	0	0	0	0	0	0	0	3705	1595	55	5		5	COL16A1	1	32163953	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	7321	32163953	217086668	26	83469											
YARS	8565	broad.mit.edu	37	chr1	33263345	33263345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgcaagtgaaaaaagaCaggaaagcagacactcacct	11	8	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33263345	A	A	33263345	1	1	78	0	1	0	0	0	0	0	0	0	17594	493	17	3		3	YARS	1	33263345	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1099392	33263345	215987276	27	83470											
ADC	113451	broad.mit.edu	37	chr1	33558871	33558871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccagcagaggggcactgcGtgtctcatcaggatggttct	14	10	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33558871	A	A	33558871	1	1	78	0	1	0	0	0	0	0	0	0	287	1160	40	4		4	ADC	1	33558871	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	295526	33558871	215691750	28	83471											
CSMD2	114784	broad.mit.edu	37	chr1	34238314	34238314	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttccctccggccatatgCaggtatgccagggtcaccgc	11	16	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34238314	G	G	34238314	3	3	78	1	0	0	0	0	1	0	0	0	3979	710	25	4	9109	4	CSMD2	1	34238314	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	679443	34238314	215012307	29	83472											
MEAF6	64769	broad.mit.edu	37	chr1	37959828	37959828	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctctatagctaaagattaTatttcaggccaggcacagtg	9	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37959828	A	A	37959828	1	1	78	0	1	0	0	0	0	0	0	0	9514	1421	49	5		5	MEAF6	1	37959828	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3721514	37959828	211290793	30	83473											
COL9A2	1298	broad.mit.edu	37	chr1	40768890	40768890	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctttcaggaagaagccccTggctacaagggcccaccgct	11	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40768890	A	A	40768890	1	1	78	0	1	0	0	0	0	0	0	0	3740	1595	55	5		5	COL9A2	1	40768890	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2809062	40768890	208481731	31	83474											
PIK3R3	8503	broad.mit.edu	37	chr1	46570715	46570715	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgattttcatgacaaataCagtaatgctgtattagctag	7	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46570715	T	T	46570715	1	4	78	0	1	0	0	0	0	0	0	0	12015	493	17	4		4	PIK3R3	1	46570715	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5801825	46570715	202679906	32	83475											
DMBX1	127343	broad.mit.edu	37	chr1	46972733	46972733	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcacgccatgaactcactCagcgccatgtacaacctgca	7	16	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46972733	T	T	46972733	2	4	78	1	0	0	0	0	0	0	0	1	4618	813	29	4		4	DMBX1	1	46972733	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	402018	46972733	202277888	33	83476											
CYP4A22	284541	broad.mit.edu	37	chr1	47609956	47609956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggcacccacactggggCagttgggcagctaggcctcc	13	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47609956	A	A	47609956	1	1	78	0	1	0	0	0	0	0	0	0	4217	725	25	3		3	CYP4A22	1	47609956	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	637223	47609956	201640665	34	83477											
ZCCHC11	23318	broad.mit.edu	37	chr1	52926896	52926896	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttgtgttatgttgagcCtgaaaaataattacatattt	6	4	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52926896	A	A	52926896	5	1	78	1	0	0	0	0	0	0	1	0	17706	695	24	2	1754	2	ZCCHC11	1	52926896	Splice_Site	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5316940	52926896	196323725	35	83478											
GPX7	2882	broad.mit.edu	37	chr1	53072521	53072521	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcaacaaggagattgagAgctttgcccgccgcacctac	10	13	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53072521	T	T	53072521	3	4	78	1	0	0	0	0	1	0	0	0	6811	304	11	5	310	5	GPX7	1	53072521	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	145625	53072521	196178100	36	83479											
C8A	731	broad.mit.edu	37	chr1	57347420	57347420	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttttctataaagtttgcTggtgtctgaagtctccttca	8	7	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57347420	A	A	57347420	1	1	78	0	1	0	0	0	0	0	0	0	2441	1595	55	5		5	C8A	1	57347420	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	4274899	57347420	191903201	37	83480											
C1orf87	127795	broad.mit.edu	37	chr1	60506908	60506908	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaaccaatttatttaagcAcattcccagttctaaatgaa	3	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60506908	G	G	60506908	1	3	78	0	1	0	0	0	0	0	0	0	2086	174	6	5		5	C1orf87	1	60506908	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3159488	60506908	188743713	38	83481											
JAK1	3716	broad.mit.edu	37	chr1	65330594	65330594	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttctcctcatccttcTtgtgtttattttccagtttt	4	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65330594	C	C	65330594	3	2	78	1	0	0	0	0	1	0	0	0	8007	1609	56	5	2484	5	JAK1	1	65330594	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	4823686	65330594	183920027	39	83482											
JAK1	3716	broad.mit.edu	37	chr1	65338902	65338902	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgccttttttctcctcacTtggggcaagtccaggtgtgg	12	11	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65338902	C	C	65338902	1	2	78	0	1	0	0	0	0	0	0	0	8007	1624	56	5		5	JAK1	1	65338902	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	8308	65338902	183911719	40	83483											
SLC44A5	204962	broad.mit.edu	37	chr1	75679363	75679363	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatttttattatagcagccTgtactgactcagacaccagc	7	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75679363	A	A	75679363	1	1	78	0	1	0	0	0	0	0	0	0	14753	1595	55	5		5	SLC44A5	1	75679363	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	10340461	75679363	173571258	41	83484											
PIGK	10026	broad.mit.edu	37	chr1	77685129	77685129	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcacctgaaggggcggaggCagtgccgtaaagtagcgctg	17	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77685129	T	T	77685129	1	4	78	0	1	0	0	0	0	0	0	0	11985	725	25	4		4	PIGK	1	77685129	5'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2005766	77685129	171565492	42	83485											
USP33	23032	broad.mit.edu	37	chr1	78181454	78181454	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaacgtaagcttctgcaTtttgtacagtagattctgaa	8	6	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78181454	A	A	78181454	3	1	78	1	0	0	0	0	1	0	0	0	17191	1493	52	5	757	5	USP33	1	78181454	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	496325	78181454	171069167	43	83486											
USP33	23032	broad.mit.edu	37	chr1	78183488	78183488	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattacaggtatgagccacCacgcccaggcttattttaat	8	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78183488	A	A	78183488	1	1	78	0	1	0	0	0	0	0	0	0	17191	609	21	2		2	USP33	1	78183488	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2034	78183488	171067133	44	83487											
IFI44L	10964	broad.mit.edu	37	chr1	79094223	79094223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaattctgaaatgaaacGtggggaacataaggattatg	11	3	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79094223	T	T	79094223	1	4	78	0	1	0	0	0	0	0	0	0	7588	1160	40	3		3	IFI44L	1	79094223	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	910735	79094223	170156398	45	83488											
IFI44	10561	broad.mit.edu	37	chr1	79120918	79120918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacatttgaggccacctaGcctttgcttctctgttcaaa	7	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79120918	T	T	79120918	1	4	78	0	1	0	0	0	0	0	0	0	7587	986	34	3		3	IFI44	1	79120918	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	26695	79120918	170129703	46	83489											
ELTD1	64123	broad.mit.edu	37	chr1	79403639	79403639	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcccaaactacaaatgtatCcctttgaacaaaattattca	3	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79403639	G	G	79403639	3	3	78	1	0	0	0	0	1	0	0	0	5126	855	30	4	1499	4	ELTD1	1	79403639	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	282721	79403639	169846982	47	83490											
LPHN2	23266	broad.mit.edu	37	chr1	81968878	81968878	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagctccccatgaagatcagGatcaacggcagggaagacag	12	11	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81968878	T	T	81968878	1	4	78	0	1	0	0	0	0	0	0	0	9003	1189	41	3		3	LPHN2	1	81968878	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2565239	81968878	167281743	48	83491											
LPHN2	23266	broad.mit.edu	37	chr1	82456358	82456358	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagatgatgctattgtggcAgatgcttcatctttaatgca	10	6	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456358	T	T	82456358	2	4	78	1	0	0	0	0	0	0	0	1	9003	175	7	5		5	LPHN2	1	82456358	Silent	SNP	A	TCGA-17-Z049-01A-01W-0746-08	487480	82456358	166794263	49	83492											
MCOLN3	55283	broad.mit.edu	37	chr1	85485097	85485097	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagatgtagcctctagagtCactcaggtttggcggaggta	15	7	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85485097	A	A	85485097	1	1	78	0	1	0	0	0	0	0	0	0	9490	841	29	3		3	MCOLN3	1	85485097	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3028739	85485097	163765524	50	83493											
CLCA2	9635	broad.mit.edu	37	chr1	86891153	86891153	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaataaaacaagaatcataTgaaaaggtaagaatccagga	7	4	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86891153	A	A	86891153	4	1	78	1	0	0	0	0	0	1	0	0	3489	1471	51	5	324	5	CLCA2	1	86891153	Nonsense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1406056	86891153	162359468	51	83494											
CLCA4	22802	broad.mit.edu	37	chr1	87025407	87025407	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttttaaggcaggattatAgaagactgaggaggctttca	12	6	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87025407	G	G	87025407	1	3	78	0	1	0	0	0	0	0	0	0	3490	435	15	5		5	CLCA4	1	87025407	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	134254	87025407	162225214	52	83495											
CCDC18	343099	broad.mit.edu	37	chr1	93648850	93648850	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagttaaattctattcatGtgagtattttgactgaaact	7	4	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93648850	A	A	93648850	1	1	78	0	1	0	0	0	0	0	0	0	2821	1392	48	4		4	CCDC18	1	93648850	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6623443	93648850	155601771	53	83496											
ABCA4	24	broad.mit.edu	37	chr1	94481334	94481334	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacaagggcaggaaggtttTctggagaagtgtaggctttc	14	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94481334	G	G	94481334	3	3	78	1	0	0	0	0	1	0	0	0	34	1783	62	5	1604	5	ABCA4	1	94481334	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	832484	94481334	154769287	54	83497											
DPYD	1806	broad.mit.edu	37	chr1	98157295	98157295	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacaccaaggtccttcattAgctcaatctcaaaattcact	3	12	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98157295	C	C	98157295	3	2	78	1	0	0	0	0	1	0	0	0	4785	420	15	5	2405	5	DPYD	1	98157295	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3675961	98157295	151093326	55	83498											
AGL	178	broad.mit.edu	37	chr1	100345606	100345606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttccttaataagaggtaGgcttgttggagtgtatttcc	11	5	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100345606	T	T	100345606	1	4	78	0	1	0	0	0	0	0	0	0	384	1015	35	2		2	AGL	1	100345606	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2188311	100345606	148905015	56	83499											
COL11A1	1301	broad.mit.edu	37	chr1	103449614	103449614	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatgataatatagagatgtTacaaattgtaaggtaatcat	7	3	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103449614	A	A	103449614	1	1	78	0	1	0	0	0	0	0	0	0	3699	1769	61	5		5	COL11A1	1	103449614	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3104008	103449614	145801007	57	83500											
COL11A1	1301	broad.mit.edu	37	chr1	103496798	103496799	+	Missense_Mutation	DNP	CC	AA	AA													atcaaaaactgctgaatgtcCccctgggaaaaaaaaaaaaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	103496799	AA	AA	103496798	3	1	78	1	0	0	0	0	1	0	0	0	3699	610	22	2	5175	2	COL11A1	1	103496798	Missense_Mutation	DNP	CC	TCGA-17-Z049-01A-01W-0746-08	47184	103496798	145753823	58	83501											
FNDC7	163479	broad.mit.edu	37	chr1	109268418	109268418	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccaagaagatccccctggCcacctgtctgtggcttggtc	10	14	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109268418	T	T	109268418	2	4	78	1	0	0	0	0	0	0	0	1	6031	726	26	4		4	FNDC7	1	109268418	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5771620	109268418	139982203	59	83502											
RAP1A	5906	broad.mit.edu	37	chr1	112106622	112106622	+	Intron	DEL	C	-	-													gccacagaagcttccaacagCcacattccacccatccaacc							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112106622	-	-	112106622	6	5	78	0	1	1	0	1	0	0	0	0	13143	754	26	0		0	RAP1A	1	112106622	Intron	DEL	C	TCGA-17-Z049-01A-01W-0746-08	2838204	112106622	137143999	60	83503											
LRIG2	9860	broad.mit.edu	37	chr1	113661947	113661947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtccatacacctatattGctgaggaggacgttcttgat	9	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113661947	T	T	113661947	3	4	78	1	0	0	0	0	1	0	0	0	9032	1319	46	3	2839	3	LRIG2	1	113661947	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1555325	113661947	135588674	61	83504											
VANGL1	81839	broad.mit.edu	37	chr1	116202106	116202106	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accccttgaagtgtggtgaaGatgggtgggttttgatgctc	15	6	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116202106	A	A	116202106	1	1	78	0	1	0	0	0	0	0	0	0	17246	957	33	4		4	VANGL1	1	116202106	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2540159	116202106	133048515	62	83505											
TTF2	8458	broad.mit.edu	37	chr1	117619206	117619206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctcacctccacacatatGgtcccttcacttagtttgct	5	15	2	0	rs116746820	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117619206	T	T	117619206	1	4	78	0	1	0	0	0	0	0	0	0	16845	1363	47	2		2	TTF2	1	117619206	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1417100	117619206	131631415	63	83506											
HAO2	51179	broad.mit.edu	37	chr1	119923353	119923353	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtgaatgtgaaggcaagaTacaaaaataagaattttttg	10	2	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119923353	C	C	119923353	1	2	78	0	1	0	0	0	0	0	0	0	7018	1421	49	5		5	HAO2	1	119923353	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2304147	119923353	129327268	64	83507											
NBPF7	343505	broad.mit.edu	37	chr1	120377670	120377670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgaagcctgagcctcCggctggctgaagaggcaagt	15	10	0	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120377670	A	A	120377670	1	1	78	0	1	0	0	0	0	0	0	0	10293	667	23	1		1	NBPF7	1	120377670	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	454317	120377670	128872951	65	83508											
PDE4DIP	9659	broad.mit.edu	37	chr1	144852366	144852366	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgctcctcagcagataggTagctgcacaaaagggggaca	13	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144852366	A	A	144852366	1	1	78	0	1	0	0	0	0	0	0	0	11737	1653	57	5		5	PDE4DIP	1	144852366	3'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	24474696	144852366	104398255	66	83509											
NBPF9	400818	broad.mit.edu	37	chr1	145139096	145139097	+	Intron	DNP	AG	TT	TT													ggcattattatccgaagggaAgggactgtagaatttccatt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	145139097	TT	TT	145139096	1	4	78	0	1	0	0	0	0	0	0	0	10294	87	3	5		5	NBPF9	1	145139096	Intron	DNP	AG	TCGA-17-Z049-01A-01W-0746-08	286730	145139096	104111525	67	83510											
LOC200030	200030	broad.mit.edu	37	chr1	148004823	148004823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaaactaaagaagcagcCagggaaaatcggacaccaca	9	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148004823	A	A	148004823	1	1	78	0	1	0	0	0	0	0	0	0	8950	609	21	2		2	LOC200030	1	148004823	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2865727	148004823	101245798	68	83511											
FCGR1A	2209	broad.mit.edu	37	chr1	149762713	149762713	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacatcaggtctcagccaaCcttcccttccaaacataact	4	16	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149762713	G	G	149762713	1	3	78	0	1	0	0	0	0	0	0	0	5836	522	18	4		4	FCGR1A	1	149762713	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1757890	149762713	99487908	69	83512											
SV2A	9900	broad.mit.edu	37	chr1	149877629	149877629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagcaacatgagcctggcCacagtgaaacccacccacag	10	14	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149877629	A	A	149877629	1	1	78	0	1	0	0	0	0	0	0	0	15535	609	21	2		2	SV2A	1	149877629	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	114916	149877629	99372992	70	83513											
SF3B4	10262	broad.mit.edu	37	chr1	149897745	149897745	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctggatggggcatcccaCccggtgggaatgggtgagga	17	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149897745	T	T	149897745	3	4	78	1	0	0	0	0	1	0	0	0	14266	507	18	4	390	4	SF3B4	1	149897745	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	20116	149897745	99352876	71	83514											
TUFT1	7286	broad.mit.edu	37	chr1	151534745	151534745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgactctggtgatgcgaGcgtgggagcccctcctttca	13	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151534745	T	T	151534745	1	4	78	0	1	0	0	0	0	0	0	0	16898	986	34	3		3	TUFT1	1	151534745	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1637000	151534745	97715876	72	83515											
MRPL9	65005	broad.mit.edu	37	chr1	151732565	151732565	+	Frame_Shift_Del	DEL	T	-	-													ggggccatagccttggcagcTtgctgggctaaccagtactt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151732565	-	-	151732565	7	5	78	1	0	1	0	1	0	0	0	0	9914	1606	56	0	42	0	MRPL9	1	151732565	Frame_Shift_Del	DEL	T	TCGA-17-Z049-01A-01W-0746-08	197820	151732565	97518056	73	83516											
IVL	3713	broad.mit.edu	37	chr1	152883676	152883676	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacctggagcaggaggagaAgcaactggagctcccagagc	15	10	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152883676	T	T	152883676	3	4	78	1	0	0	0	0	1	0	0	0	7999	72	3	5	1405	5	IVL	1	152883676	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1151111	152883676	96366945	74	83517											
SPRR2A	6700	broad.mit.edu	37	chr1	153028923	153028923	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggctttgatgagaagatgaAggtggagctgtggaacgagg	18	3	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153028923	G	G	153028923	1	3	78	0	1	0	0	0	0	0	0	0	15215	87	3	5		5	SPRR2A	1	153028923	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	145247	153028923	96221698	75	83518											
NUP210L	91181	broad.mit.edu	37	chr1	154042693	154042694	+	Intron	INS	-	A	A													aaaacaaaacaaaacaaaacINSaaacaaacaaaaaaacactc							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154042694	A	A	154042693	6	5	78	0	1	1	1	0	0	0	0	0	10856	493	17	0		0	NUP210L	1	154042693	Intron	INS	-	TCGA-17-Z049-01A-01W-0746-08	1013770	154042693	95207928	76	83519											
KCNN3	3782	broad.mit.edu	37	chr1	154680544	154680544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgtgggtggtgcccaCtgccacgctgacaccccggg	17	13	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154680544	A	A	154680544	3	1	78	1	0	0	0	0	1	0	0	0	8150	565	20	3	95	3	KCNN3	1	154680544	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	637851	154680544	94570077	77	83520											
KCNN3	3782	broad.mit.edu	37	chr1	154821432	154821432	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctgccacagaatgggcatCagtgaaagtttgccgagtag	13	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154821432	G	G	154821432	1	3	78	0	1	0	0	0	0	0	0	0	8150	841	29	4		4	KCNN3	1	154821432	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	140888	154821432	94429189	78	83521											
TRIM46	80128	broad.mit.edu	37	chr1	155152076	155152076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgccaggccagtggccaggCcctgactgacacccgctgtc	12	16	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155152076	T	T	155152076	1	4	78	0	1	0	0	0	0	0	0	0	16646	754	26	4		4	TRIM46	1	155152076	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	330644	155152076	94098545	79	83522											
ARHGEF2	9181	broad.mit.edu	37	chr1	155935171	155935171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactgtgagaggatccggCgcagccccaggggagactca	16	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155935171	A	A	155935171	3	1	78	1	0	0	0	0	1	0	0	0	905	768	27	3	2525	3	ARHGEF2	1	155935171	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	783095	155935171	93315450	80	83523											
SMG5	23381	broad.mit.edu	37	chr1	156244514	156244514	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagagatttgtaggcccattCttctgccttcccgcacctat	7	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156244514	A	A	156244514	1	1	78	0	1	0	0	0	0	0	0	0	14910	928	32	3		3	SMG5	1	156244514	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	309343	156244514	93006107	81	83524											
CD1C	911	broad.mit.edu	37	chr1	158260984	158260984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatttgtcaaccaatcctGggcacgaggtcagggctcag	11	12	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158260984	C	C	158260984	3	2	78	1	0	0	0	0	1	0	0	0	3006	1357	47	4	128	4	CD1C	1	158260984	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2016470	158260984	90989637	82	83525											
CRP	1401	broad.mit.edu	37	chr1	159683237	159683237	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcagtgtaaaaaagcgGgaggtaccagagacagagac	13	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159683237	T	T	159683237	1	4	78	0	1	0	0	0	0	0	0	0	3927	1247	43	2		2	CRP	1	159683237	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1422253	159683237	89567384	83	83526											
PIGM	93183	broad.mit.edu	37	chr1	160000240	160000240	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaatgtaacacagtagcaGagggtgtggaacatacacta	11	7	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160000240	A	A	160000240	1	1	78	0	1	0	0	0	0	0	0	0	11987	957	33	4		4	PIGM	1	160000240	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	317003	160000240	89250381	84	83527											
ATP1A2	477	broad.mit.edu	37	chr1	160100181	160100181	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtccaggaagccactctgcgGatctcactgatcccttctgc	9	15	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160100181	A	A	160100181	1	1	78	0	1	0	0	0	0	0	0	0	1133	1189	41	4		4	ATP1A2	1	160100181	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	99941	160100181	89150440	85	83528											
F11R	50848	broad.mit.edu	37	chr1	161004598	161004598	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactccagcctgggcaacaaGagcgaaactgtgtctcaaaa	9	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161004598	C	C	161004598	1	2	78	0	1	0	0	0	0	0	0	0	5381	957	33	4		4	F11R	1	161004598	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	904417	161004598	88246023	86	83529											
HSPA6	3310	broad.mit.edu	37	chr1	161495987	161495987	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgacaagggccggctgagCaaggaggaggtggagaggat	19	5	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161495987	T	T	161495987	2	4	78	1	0	0	0	0	0	0	0	1	7484	709	25	4		4	HSPA6	1	161495987	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	491389	161495987	87754634	87	83530											
LMX1A	4009	broad.mit.edu	37	chr1	165324697	165324697	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcggaaagagagtgcgcccAggacgcacggcctgaacact	14	12	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165324697	T	T	165324697	1	4	78	0	1	0	0	0	0	0	0	0	8935	203	7	5		5	LMX1A	1	165324697	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3828710	165324697	83925924	88	83531											
GPA33	10223	broad.mit.edu	37	chr1	167038196	167038196	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacgtgacttggtgttgccCtccaggtctgacatcagcga	11	12	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167038196	T	T	167038196	2	4	78	1	0	0	0	0	0	0	0	1	6651	680	24	4		4	GPA33	1	167038196	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1713499	167038196	82212425	89	83532											
DUSP27	92235	broad.mit.edu	37	chr1	167096834	167096834	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagggggaccagcaagccCatcttcagcctctttgctga	12	12	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167096834	T	T	167096834	2	4	78	1	0	0	0	0	0	0	0	1	4864	581	21	4		4	DUSP27	1	167096834	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	58638	167096834	82153787	90	83533											
MPZL1	9019	broad.mit.edu	37	chr1	167741611	167741611	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgacaagaaagatgcatcaAtcaacatagaaaatatgcag	7	6	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167741611	G	G	167741611	3	3	78	1	0	0	0	0	1	0	0	0	9843	101	4	5	368	5	MPZL1	1	167741611	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	644777	167741611	81509010	91	83534											
ADCY10	55811	broad.mit.edu	37	chr1	167789310	167789310	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctttcgttactcatccttGagataaaatttggctatggt	7	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167789310	C	C	167789310	1	2	78	0	1	0	0	0	0	0	0	0	293	1305	45	4		4	ADCY10	1	167789310	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	47699	167789310	81461311	92	83535											
DCAF6	55827	broad.mit.edu	37	chr1	167936005	167936005	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaatgagagaaaaaaaatCaagaaggcagaaatgaagaa	9	2	1	6			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167936005	G	G	167936005	1	3	78	0	1	0	0	0	0	0	0	0	4307	841	29	4		4	DCAF6	1	167936005	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	146695	167936005	81314616	93	83536											
SELL	6402	broad.mit.edu	37	chr1	169680598	169680598	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacaaccccaagagtttctAtctgagcatctaaacgtctt	5	12	4	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169680598	G	G	169680598	1	3	78	0	1	0	0	0	0	0	0	0	14129	464	16	5		5	SELL	1	169680598	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1744593	169680598	79570023	94	83537											
SELE	6401	broad.mit.edu	37	chr1	169698390	169698391	+	Nonsense_Mutation	DNP	CC	AT	AT													gcattcaacctgggctggtcCctgcaacatgaagccttcct							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	169698391	AT	AT	169698390	4	1	78	1	0	0	0	0	0	1	0	0	14126	632	22	2	833	2	SELE	1	169698390	Nonsense_Mutation	DNP	CC	TCGA-17-Z049-01A-01W-0746-08	17792	169698390	79552231	95	83538											
SELE	6401	broad.mit.edu	37	chr1	169698684	169698684	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgaggtacactgaaggctCtgggctcccattagttcaaa	11	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169698684	G	G	169698684	3	3	78	1	0	0	0	0	1	0	0	0	14126	912	32	4	1018	4	SELE	1	169698684	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	294	169698684	79551937	96	83539											
SLC9A11	284525	broad.mit.edu	37	chr1	173569258	173569258	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttattgtacatacagtacctCaacagaattgtaggccatgt	7	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173569258	T	T	173569258	3	4	78	1	0	0	0	0	1	0	0	0	14825	835	29	4	3252	4	SLC9A11	1	173569258	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3870574	173569258	75681363	97	83540											
TNR	7143	broad.mit.edu	37	chr1	175355120	175355120	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgacaccaccggttggctCcacccctctttccctccttg	7	18	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175355120	A	A	175355120	1	1	78	0	1	0	0	0	0	0	0	0	16461	870	30	3		3	TNR	1	175355120	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1785862	175355120	73895501	98	83541											
TNR	7143	broad.mit.edu	37	chr1	175360325	175360325	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccagctctaggagaaattCtagcacctctgttgtctctc	7	13	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175360325	A	A	175360325	1	1	78	0	1	0	0	0	0	0	0	0	16461	928	32	3		3	TNR	1	175360325	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5205	175360325	73890296	99	83542											
ASTN1	460	broad.mit.edu	37	chr1	176934442	176934442	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaacacccacttcgtatcAggcacagtgctaggtggtag	11	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176934442	T	T	176934442	1	4	78	0	1	0	0	0	0	0	0	0	1068	203	7	5		5	ASTN1	1	176934442	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1574117	176934442	72316179	100	83543											
SOAT1	6646	broad.mit.edu	37	chr1	179320569	179320569	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttattctcaagaatggtAtgcacgtcagcactgtcctc	7	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179320569	G	G	179320569	3	3	78	1	0	0	0	0	1	0	0	0	15024	449	16	5	1622	5	SOAT1	1	179320569	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2386127	179320569	69930052	101	83544											
CACNA1E	777	broad.mit.edu	37	chr1	181689367	181689367	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcttccctacggaatttgGtggtctccttgatgagctca	12	10	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181689367	A	A	181689367	3	1	78	1	0	0	0	0	1	0	0	0	2568	1261	44	4	1831	4	CACNA1E	1	181689367	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2368798	181689367	67561254	102	83545											
CACNA1E	777	broad.mit.edu	37	chr1	181753016	181753016	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgaactgtcatctatccAgttaaggacacaataatgca	6	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181753016	G	G	181753016	1	3	78	0	1	0	0	0	0	0	0	0	2568	203	7	5		5	CACNA1E	1	181753016	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	63649	181753016	67497605	103	83546											
RGS18	64407	broad.mit.edu	37	chr1	192128254	192128254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgggtatgggtgggcGtgggtttttaccaactacaa	16	5	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192128254	T	T	192128254	1	4	78	0	1	0	0	0	0	0	0	0	13409	1160	40	3		3	RGS18	1	192128254	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	10375238	192128254	57122367	104	83547											
KCNT2	343450	broad.mit.edu	37	chr1	196285039	196285039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgaagagtgtctgcacGttcacaatggttttggcatc	10	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196285039	T	T	196285039	3	4	78	1	0	0	0	0	1	0	0	0	8162	1136	40	3	973	3	KCNT2	1	196285039	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4156785	196285039	52965582	105	83548											
F13B	2165	broad.mit.edu	37	chr1	197020111	197020111	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccctctgtcacccaggctgGagtatggtggcatgatcatg	12	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197020111	T	T	197020111	1	4	78	0	1	0	0	0	0	0	0	0	5384	1189	41	3		3	F13B	1	197020111	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	735072	197020111	52230510	106	83549											
CRB1	23418	broad.mit.edu	37	chr1	197404099	197404099	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaatgatggcacatggcacGaagtgaccctttccatgaca	10	10	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197404099	T	T	197404099	4	4	78	1	0	0	0	0	0	1	0	0	3880	1059	37	3	3140	3	CRB1	1	197404099	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	383988	197404099	51846522	107	83550											
PTPRC	5788	broad.mit.edu	37	chr1	198677262	198677262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtatcttcttgtcagGggttgaaaagtttcagttac	9	6	5	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198677262	T	T	198677262	3	4	78	1	0	0	0	0	1	0	0	0	12905	1246	43	2	944	2	PTPRC	1	198677262	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1273163	198677262	50573359	108	83551											
FAM58B	339521	broad.mit.edu	37	chr1	200182807	200182807	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcgtggcgaggttcatcaTggaggcaggtgtcaagctag	16	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200182807	C	C	200182807	3	2	78	1	0	0	0	0	1	0	0	0	5642	1464	51	5	118	5	FAM58B	1	200182807	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1505545	200182807	49067814	109	83552											
CACNA1S	779	broad.mit.edu	37	chr1	201044882	201044883	+	Intron	DNP	CC	GG	GG													tcattccacagtctgggtggCcagcccctgctatccccaaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	201044883	GG	GG	201044882	1	3	78	0	1	0	0	0	0	0	0	0	2573	754	26	4		4	CACNA1S	1	201044882	Intron	DNP	CC	TCGA-17-Z049-01A-01W-0746-08	862075	201044882	48205739	110	83553											
TNNT2	7139	broad.mit.edu	37	chr1	201334414	201334414	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caactcattcaggtccttctCcatgcgcttccggtggatgt	9	13	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201334414	A	A	201334414	4	1	78	1	0	0	0	0	0	1	0	0	16454	864	30	3	615	3	TNNT2	1	201334414	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	289532	201334414	47916207	111	83554											
KDM5B	10765	broad.mit.edu	37	chr1	202710910	202710910	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcagtaattggcttctttCaaacttagaatcttaaattc	4	7	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202710910	A	A	202710910	1	1	78	0	1	0	0	0	0	0	0	0	8204	841	29	3		3	KDM5B	1	202710910	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1376496	202710910	46539711	112	83555											
SOX13	9580	broad.mit.edu	37	chr1	204082127	204082127	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaccatcaagtcagaggaGaagaaagagccttgccacga	11	10	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204082127	T	T	204082127	3	4	78	1	0	0	0	0	1	0	0	0	15058	933	33	3	86	3	SOX13	1	204082127	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1371217	204082127	45168494	113	83556											
NFASC	23114	broad.mit.edu	37	chr1	204985663	204985663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgctatctactctctggCctaacggagcccacccaggc	8	16	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204985663	A	A	204985663	3	1	78	1	0	0	0	0	1	0	0	0	10454	739	26	3	4242	3	NFASC	1	204985663	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	903536	204985663	44264958	114	83557											
C1orf186	440712	broad.mit.edu	37	chr1	206239438	206239438	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagggttgacaaaataccAgaaactgggcttgtgtcttt	11	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206239438	G	G	206239438	3	3	78	1	0	0	0	0	1	0	0	0	2040	188	7	5	62	5	C1orf186	1	206239438	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1253775	206239438	43011183	115	83558											
LGTN	1939	broad.mit.edu	37	chr1	206767041	206767041	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtccttggccccaggGgcaggattgacggtggtgct	17	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206767041	T	T	206767041	2	4	78	1	0	0	0	0	0	0	0	1	8832	1219	43	2		2	LGTN	1	206767041	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	527603	206767041	42483580	116	83559											
IL19	29949	broad.mit.edu	37	chr1	206972271	206972271	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggagcgtttccgcacagatCtgcgtgttccttaccactca	10	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206972271	G	G	206972271	3	3	78	1	0	0	0	0	1	0	0	0	7719	913	32	4	34	4	IL19	1	206972271	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	205230	206972271	42278350	117	83560											
IL20	50604	broad.mit.edu	37	chr1	207041914	207041914	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagacagaataggaggAaagtgatgctgctgctaaga	16	4	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207041914	G	G	207041914	1	3	78	0	1	0	0	0	0	0	0	0	7737	261	9	5		5	IL20	1	207041914	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	69643	207041914	42208707	118	83561											
KCNH1	3756	broad.mit.edu	37	chr1	211035071	211035071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagactggtcagaaagaagCtggataaaatgatcctttag	10	6	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211035071	A	A	211035071	1	1	78	0	1	0	0	0	0	0	0	0	8101	812	28	3		3	KCNH1	1	211035071	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3993157	211035071	38215550	119	83562											
KCTD3	51133	broad.mit.edu	37	chr1	215793472	215793472	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaggccttacagagaaagtCctttattagcaagggcaaga	11	7	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215793472	T	T	215793472	3	4	78	1	0	0	0	0	1	0	0	0	8180	855	30	4	2030	4	KCTD3	1	215793472	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4758401	215793472	33457149	120	83563											
USH2A	7399	broad.mit.edu	37	chr1	216497703	216497703	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatataaaacacctgaaaatGgaaagttaattaatgtaatt	5	3	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216497703	A	A	216497703	1	1	78	0	1	0	0	0	0	0	0	0	17162	1363	47	4		4	USH2A	1	216497703	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	704231	216497703	32752918	121	83564											
USH2A	7399	broad.mit.edu	37	chr1	216538182	216538182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttggtggtaatttgttcaGtagccctagaagatgaatac	11	5	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216538182	T	T	216538182	1	4	78	0	1	0	0	0	0	0	0	0	17162	1044	36	3		3	USH2A	1	216538182	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	40479	216538182	32712439	122	83565											
GPATCH2	55105	broad.mit.edu	37	chr1	217804637	217804637	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggagtgaacaaaaagtcGaaccccgggagtgagctatg	14	7	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217804637	T	T	217804637	1	4	78	0	1	0	0	0	0	0	0	0	6656	1073	37	3		3	GPATCH2	1	217804637	5'Flank	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1266455	217804637	31445984	123	83566											
TGFB2	7042	broad.mit.edu	37	chr1	218607550	218607550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcatgaatggcttcacCataaaggttacaagccactc	7	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218607550	A	A	218607550	3	1	78	1	0	0	0	0	1	0	0	0	15941	594	21	2	735	2	TGFB2	1	218607550	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	802913	218607550	30643071	124	83567											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220332740	220332740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttacccttcggcataaCctatcttttggtgattttcc	5	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220332740	A	A	220332740	3	1	78	1	0	0	0	0	1	0	0	0	13044	506	18	3	960	3	RAB3GAP2	1	220332740	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1725190	220332740	28917881	125	83568											
LEFTY1	10637	broad.mit.edu	37	chr1	226076566	226076566	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggagcggtccccgtggctGcgctgcagcagggccacgta	17	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226076566	A	A	226076566	2	1	78	1	0	0	0	0	0	0	0	1	8787	1306	46	4		4	LEFTY1	1	226076566	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5743826	226076566	23174055	126	83569											
HIST3H2BB	128312	broad.mit.edu	37	chr1	228646196	228646196	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaaggctgtcaccaagtaCaccagctccaagtgaggcgt	10	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228646196	T	T	228646196	2	4	78	1	0	0	0	0	0	0	0	1	7250	489	17	4		4	HIST3H2BB	1	228646196	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2569630	228646196	20604425	127	83570											
LYST	1130	broad.mit.edu	37	chr1	235827894	235827894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagatccccgttcaccgtcCagagtctgaggtcactgcct	10	15	3	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235827894	A	A	235827894	3	1	78	1	0	0	0	0	1	0	0	0	9216	595	21	2	351	2	LYST	1	235827894	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7181698	235827894	13422727	128	83571											
NID1	4811	broad.mit.edu	37	chr1	236192981	236192981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatcgatgccgctgaacCgctgcttaatgaccagattg	10	12	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236192981	A	A	236192981	3	1	78	1	0	0	0	0	1	0	0	0	10509	652	23	1	2192	1	NID1	1	236192981	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	365087	236192981	13057640	129	83572											
ACTN2	88	broad.mit.edu	37	chr1	236907854	236907854	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggaatctcaccgctccctGagaatgtggctggcatgagg	13	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236907854	T	T	236907854	1	4	78	0	1	0	0	0	0	0	0	0	205	1305	45	3		3	ACTN2	1	236907854	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	714873	236907854	12342767	130	83573											
ACTN2	88	broad.mit.edu	37	chr1	236918570	236918570	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctcctcagggtgctttctTcatgcacttgtctttctttg	7	12	5	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236918570	C	C	236918570	1	2	78	0	1	0	0	0	0	0	0	0	205	1798	62	5		5	ACTN2	1	236918570	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	10716	236918570	12332051	131	83574											
MTR	4548	broad.mit.edu	37	chr1	237058851	237058851	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatcgagcagtctacagGtaggagccaggaggctgcgg	16	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237058851	T	T	237058851	5	4	78	1	0	0	0	0	0	0	1	0	10052	1275	44	3	3721	3	MTR	1	237058851	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	140281	237058851	12191770	132	83575											
RYR2	6262	broad.mit.edu	37	chr1	237540586	237540586	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatagattttaattaagagGaactttttcatgtttcacat	5	4	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237540586	A	A	237540586	1	1	78	0	1	0	0	0	0	0	0	0	13880	1189	41	4		4	RYR2	1	237540586	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	481735	237540586	11710035	133	83576											
RYR2	6262	broad.mit.edu	37	chr1	237656285	237656285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgctcactctgtgtttGccacggggttgcagtccgtt	12	11	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237656285	T	T	237656285	3	4	78	1	0	0	0	0	1	0	0	0	13880	1319	46	3	1933	3	RYR2	1	237656285	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	115699	237656285	11594336	134	83577											
RYR2	6262	broad.mit.edu	37	chr1	237711738	237711738	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgatttgtagttaccagCtgacaagtggatacaagcct	9	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237711738	G	G	237711738	3	3	78	1	0	0	0	0	1	0	0	0	13880	796	28	4	3016	4	RYR2	1	237711738	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	55453	237711738	11538883	135	83578											
KMO	8564	broad.mit.edu	37	chr1	241712234	241712234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagcaggatgaacgctgGgcacggtggctcctggcact	14	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241712234	T	T	241712234	1	4	78	0	1	0	0	0	0	0	0	0	8495	1247	43	2		2	KMO	1	241712234	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4000496	241712234	7538387	136	83579											
CHML	1122	broad.mit.edu	37	chr1	241798259	241798259	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaacttgttctacctttccTtcccgaaatgcaagaatcct	6	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241798259	A	A	241798259	3	1	78	1	0	0	0	0	1	0	0	0	3382	1606	56	5	1164	5	CHML	1	241798259	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	86025	241798259	7452362	137	83580											
CHML	1122	broad.mit.edu	37	chr1	241798846	241798846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatcaggtcctgccataCaacagtactttcttccccaa	6	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241798846	A	A	241798846	3	1	78	1	0	0	0	0	1	0	0	0	3382	478	17	3	1751	3	CHML	1	241798846	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	587	241798846	7451775	138	83581											
OR2B11	127623	broad.mit.edu	37	chr1	247615073	247615073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtagcagaggtccaggaagGacaggtgactgaggaagatg	17	5	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247615073	T	T	247615073	3	4	78	1	0	0	0	0	1	0	0	0	11082	1174	41	3	744	3	OR2B11	1	247615073	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5816227	247615073	1635548	139	83582											
OR2C3	81472	broad.mit.edu	37	chr1	247695285	247695285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatctcgcaaaagaagtGgtcgatgcaattgttcccac	11	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695285	T	T	247695285	3	4	78	1	0	0	0	0	1	0	0	0	11087	1348	47	2	437	2	OR2C3	1	247695285	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	80212	247695285	1555336	140	83583											
OR2L13	284521	broad.mit.edu	37	chr1	248138168	248138168	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attggctttaattggcaatcAgtccgtgatccttctcatct	7	10	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248138168	T	T	248138168	1	4	78	0	1	0	0	0	0	0	0	0	11100	203	7	5		5	OR2L13	1	248138168	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	442883	248138168	1112453	141	83584											
OR2L13	284521	broad.mit.edu	37	chr1	248166235	248166235	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaagaaattgtaccagctCcactttggacctctgataga	8	10	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248166235	A	A	248166235	1	1	78	0	1	0	0	0	0	0	0	0	11100	870	30	3		3	OR2L13	1	248166235	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	28067	248166235	1084386	142	83585											
OR2L13	284521	broad.mit.edu	37	chr1	248185862	248185862	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttgagcagcaccatcTttcttgtgtttcccttcact	6	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248185862	A	A	248185862	1	1	78	0	1	0	0	0	0	0	0	0	11100	1624	56	5		5	OR2L13	1	248185862	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	19627	248185862	1064759	143	83586											
OR2M5	127059	broad.mit.edu	37	chr1	248309178	248309178	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttttactacctgttcctcTcacctcatggtggtgggaat	9	11	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248309178	C	C	248309178	2	2	78	1	0	0	0	0	0	0	0	1	11107	1538	54	5		5	OR2M5	1	248309178	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	123316	248309178	941443	144	83587											
OR14C36	127066	broad.mit.edu	37	chr1	248512562	248512562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgcacactggcagcacattCcagctgcccttctgtcggtc	9	15	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248512562	A	A	248512562	3	1	78	1	0	0	0	0	1	0	0	0	11040	854	30	3	488	3	OR14C36	1	248512562	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	203384	248512562	738059	145	83588											
TPO	7173	broad.mit.edu	37	chr2	1481057	1481057	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccggccctagagaggcagcTgcggaactggaccagtgccg	15	14	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1481057	G	G	1481057	3	3	78	1	0	0	0	0	1	0	0	0	16534	1580	55	5	1045	5	TPO	2	1481057	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08		1481057	241718316	146	83589											
PXDN	7837	broad.mit.edu	37	chr2	1653092	1653092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtccaggaactggccccaCtgcatcagcatgtgggtgaa	13	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1653092	A	A	1653092	3	1	78	1	0	0	0	0	1	0	0	0	12955	564	20	3	2007	3	PXDN	2	1653092	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	172035	1653092	241546281	147	83590											
MYT1L	23040	broad.mit.edu	37	chr2	1926039	1926039	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttcatgaggcaacttaCgttaggtagaaatattacct	8	6	1	2	rs139126460	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1926039	A	A	1926039	1	1	78	0	1	0	0	0	0	0	0	0	10201	551	19	3		3	MYT1L	2	1926039	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	272947	1926039	241273334	148	83591											
CMPK2	129607	broad.mit.edu	37	chr2	6990253	6990253	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctttgcccacagaagacgtTcatgcattttgtttaacaaa	7	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6990253	A	A	6990253	1	1	78	0	1	0	0	0	0	0	0	0	3613	1798	62	5		5	CMPK2	2	6990253	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	5064214	6990253	236209120	149	83592											
RSAD2	91543	broad.mit.edu	37	chr2	7035938	7035938	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaactgtagaaagggacgGaaggacccttccaagtccat	11	10	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7035938	T	T	7035938	2	4	78	1	0	0	0	0	0	0	0	1	13806	1161	41	3		3	RSAD2	2	7035938	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	45685	7035938	236163435	150	83593											
DDX1	1653	broad.mit.edu	37	chr2	15770224	15770224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttacctacggtcagaaaagGgctgctggtggtaagctttg	14	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15770224	T	T	15770224	3	4	78	1	0	0	0	0	1	0	0	0	4374	1223	43	2	2180	2	DDX1	2	15770224	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8734286	15770224	227429149	151	83594											
KIF3C	3797	broad.mit.edu	37	chr2	26152676	26152676	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttttagtagagacagGggttcaccatgttaaccagg	11	6	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26152676	A	A	26152676	1	1	78	0	1	0	0	0	0	0	0	0	8372	1247	43	4		4	KIF3C	2	26152676	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	10382452	26152676	217046697	152	83595											
CIB4	130106	broad.mit.edu	37	chr2	26864103	26864103	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaagctcccacctctgccCagagtccctagcccgatcta	8	17	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26864103	G	G	26864103	1	3	78	0	1	0	0	0	0	0	0	0	3454	609	21	4		4	CIB4	2	26864103	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	711427	26864103	216335270	153	83596											
C2orf71	388939	broad.mit.edu	37	chr2	29294983	29294984	+	Missense_Mutation	DNP	GG	TT	TT													acattccagtctgtggccttGgcagcctcactgacctctcc							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	29294984	TT	TT	29294983	3	4	78	1	0	0	0	0	1	0	0	0	2213	1335	47	2	1729	2	C2orf71	2	29294983	Missense_Mutation	DNP	GG	TCGA-17-Z049-01A-01W-0746-08	2430880	29294983	213904390	154	83597											
XDH	7498	broad.mit.edu	37	chr2	31611180	31611180	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctagagagatgatgaacaTctgcacaagggtatttacaa	9	7	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31611180	A	A	31611180	1	1	78	0	1	0	0	0	0	0	0	0	17553	1450	50	5		5	XDH	2	31611180	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2316197	31611180	211588193	155	83598											
SLC30A6	55676	broad.mit.edu	37	chr2	32418022	32418022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacagcccgagatacacaCgtgagattttattttcaata	8	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32418022	A	A	32418022	3	1	78	1	0	0	0	0	1	0	0	0	14673	550	19	3	427	3	SLC30A6	2	32418022	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	806842	32418022	210781351	156	83599											
BIRC6	57448	broad.mit.edu	37	chr2	32724693	32724693	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggagcagaattttgaaGtcgtttcagttagtactatt	9	6	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32724693	A	A	32724693	3	1	78	1	0	0	0	0	1	0	0	0	1444	1029	36	4	8730	4	BIRC6	2	32724693	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	306671	32724693	210474680	157	83600											
HAAO	23498	broad.mit.edu	37	chr2	43015605	43015605	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcgagtgggaagcgccCcctcccgctagggccaggct	15	16	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43015605	T	T	43015605	1	4	78	0	1	0	0	0	0	0	0	0	7003	638	22	4		4	HAAO	2	43015605	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	10290912	43015605	200183768	158	83601											
ABCG5	64240	broad.mit.edu	37	chr2	44053465	44053465	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaatcttgcccctgccccTgtgattcccagctcaacaca	5	17	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44053465	A	A	44053465	1	1	78	0	1	0	0	0	0	0	0	0	71	1595	55	5		5	ABCG5	2	44053465	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1037860	44053465	199145908	159	83602											
PRKCE	5581	broad.mit.edu	37	chr2	46211818	46211818	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcagggtttgcagtgtaaAggtaagttgctccctgccct	13	10	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46211818	T	T	46211818	3	4	78	1	0	0	0	0	1	0	0	0	12617	86	3	5	844	5	PRKCE	2	46211818	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2158353	46211818	196987555	160	83603											
LHCGR	3973	broad.mit.edu	37	chr2	48921418	48921418	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acattgtttggaaaagttttCagaaatggaatgtgaaaaat	9	2	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48921418	T	T	48921418	3	4	78	1	0	0	0	0	1	0	0	0	8834	835	29	4	1215	4	LHCGR	2	48921418	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2709600	48921418	194277955	161	83604											
FSHR	2492	broad.mit.edu	37	chr2	49190382	49190382	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacatgacatacagctgtgaCaaagggctgtcaatatccat	9	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49190382	G	G	49190382	3	3	78	1	0	0	0	0	1	0	0	0	6133	477	17	4	513	4	FSHR	2	49190382	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	268964	49190382	194008991	162	83605											
SPTBN1	6711	broad.mit.edu	37	chr2	54844783	54844783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaatttcaccactagctGgagggacggcatggccttca	10	12	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54844783	T	T	54844783	3	4	78	1	0	0	0	0	1	0	0	0	15237	1357	47	2	736	2	SPTBN1	2	54844783	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5654401	54844783	188354590	163	83606											
SPTBN1	6711	broad.mit.edu	37	chr2	54864845	54864845	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attatttttgttaccattctAatagacataggaagaatcgt	6	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54864845	C	C	54864845	1	2	78	0	1	0	0	0	0	0	0	0	15237	377	13	5		5	SPTBN1	2	54864845	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	20062	54864845	188334528	164	83607											
COMMD1	150684	broad.mit.edu	37	chr2	62228015	62228015	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggaatagcgggcttcgGggcctgagctggagagttga	18	8	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62228015	T	T	62228015	2	4	78	1	0	0	0	0	0	0	0	1	3746	1219	43	2		2	COMMD1	2	62228015	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7363170	62228015	180971358	165	83608											
OTX1	5013	broad.mit.edu	37	chr2	63281369	63281369	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctccagggtctgggtagggGagctgaggctgctcggggaa	20	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63281369	T	T	63281369	1	4	78	0	1	0	0	0	0	0	0	0	11414	1189	41	3		3	OTX1	2	63281369	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1053354	63281369	179918004	166	83609											
MDH1	4190	broad.mit.edu	37	chr2	63832432	63832432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgtgcagcagcgtggcGctgctgtcatcaaggctcga	14	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63832432	T	T	63832432	3	4	78	1	0	0	0	0	1	0	0	0	9501	1087	38	3	720	3	MDH1	2	63832432	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	551063	63832432	179366941	167	83610											
SNRPG	6637	broad.mit.edu	37	chr2	70508813	70508813	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgatactatttcctcgtaTtacctaagaaagagaaaaat	6	6	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70508813	C	C	70508813	3	2	78	1	0	0	0	0	1	0	0	0	14983	1493	52	5	50	5	SNRPG	2	70508813	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	6676381	70508813	172690560	168	83611											
DYSF	8291	broad.mit.edu	37	chr2	71780343	71780343	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgctcctggctgggaCcccgatcacaggatcataga	13	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71780343	T	T	71780343	1	4	78	0	1	0	0	0	0	0	0	0	4899	522	18	4		4	DYSF	2	71780343	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1271530	71780343	171419030	169	83612											
STAMBP	10617	broad.mit.edu	37	chr2	74072054	74072054	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgcccatctaaaagcttCagagcagcacagactgactt	8	11	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74072054	T	T	74072054	1	4	78	0	1	0	0	0	0	0	0	0	15368	841	29	4		4	STAMBP	2	74072054	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2291711	74072054	169127319	170	83613											
ACTG2	72	broad.mit.edu	37	chr2	74135818	74135818	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatctggcaccactccttcTacaatgagctgcgtgtagca	9	12	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74135818	C	C	74135818	3	2	78	1	0	0	0	0	1	0	0	0	197	1522	53	5	284	5	ACTG2	2	74135818	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	63764	74135818	169063555	171	83614											
ATOH8	84913	broad.mit.edu	37	chr2	85981923	85981923	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtaatttacaataaccaccAggattcctccgcgtcgccta	6	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85981923	G	G	85981923	3	3	78	1	0	0	0	0	1	0	0	0	1118	188	7	5	613	5	ATOH8	2	85981923	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	11846105	85981923	157217450	172	83615											
GPAT2	150763	broad.mit.edu	37	chr2	96691837	96691837	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcccactggaagtaggcaAagctatccctgcagtggctt	11	12	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96691837	G	G	96691837	1	3	78	0	1	0	0	0	0	0	0	0	6654	29	1	5		5	GPAT2	2	96691837	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	10709914	96691837	146507536	173	83616											
TMEM131	23505	broad.mit.edu	37	chr2	98378537	98378537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgctgctgtagctgcccCgggccacaaaggggcagggg	17	12	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98378537	A	A	98378537	3	1	78	1	0	0	0	0	1	0	0	0	16167	652	23	1	825	1	TMEM131	2	98378537	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1686700	98378537	144820836	174	83617											
VWA3B	200403	broad.mit.edu	37	chr2	98846489	98846489	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctctctctttttttgctcGactttttatctaaatcaaaa	2	9	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98846489	T	T	98846489	1	4	78	0	1	0	0	0	0	0	0	0	17368	1073	37	3		3	VWA3B	2	98846489	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	467952	98846489	144352884	175	83618											
INPP4A	3631	broad.mit.edu	37	chr2	99203983	99203983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaagaatgttggaagtcGcaaatatgcatttaattccc	8	6	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99203983	T	T	99203983	3	4	78	1	0	0	0	0	1	0	0	0	7822	1087	38	3	3125	3	INPP4A	2	99203983	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	357494	99203983	143995390	176	83619											
AFF3	3899	broad.mit.edu	37	chr2	100623987	100623987	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaccggagataatcaacAggtgcccttatcaatcacag	7	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100623987	T	T	100623987	1	4	78	0	1	0	0	0	0	0	0	0	358	203	7	5		5	AFF3	2	100623987	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1420004	100623987	142575386	177	83620											
RNF149	284996	broad.mit.edu	37	chr2	101924963	101924963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgagagcccggccccgggCcccgggcacgcacagggcca	15	19	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101924963	A	A	101924963	3	1	78	1	0	0	0	0	1	0	0	0	13561	739	26	3	1142	3	RNF149	2	101924963	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1300976	101924963	141274410	178	83621											
RGPD3	653489	broad.mit.edu	37	chr2	107041781	107041781	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccaaaatagtcatgaaatAcataccttcttcattcctaa	3	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107041781	G	G	107041781	1	3	78	0	1	0	0	0	0	0	0	0	13395	406	14	5		5	RGPD3	2	107041781	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5116818	107041781	136157592	179	83622											
ST6GAL2	84620	broad.mit.edu	37	chr2	107423025	107423025	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaccaccactaaattactGtttaaagactcaaaactaca	3	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107423025	T	T	107423025	1	4	78	0	1	0	0	0	0	0	0	0	15340	1392	48	3		3	ST6GAL2	2	107423025	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	381244	107423025	135776348	180	83623											
CCDC93	54520	broad.mit.edu	37	chr2	118694129	118694129	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtgtaaacaagatacttAgcagaagggctaaaagagta	11	4	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118694129	C	C	118694129	1	2	78	0	1	0	0	0	0	0	0	0	2900	435	15	5		5	CCDC93	2	118694129	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	11271104	118694129	124505244	181	83624											
MARCO	8685	broad.mit.edu	37	chr2	119735334	119735334	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccaaatgcttcctgcCcctttgcctctggtagcctg	7	17	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119735334	T	T	119735334	1	4	78	0	1	0	0	0	0	0	0	0	9403	638	22	4		4	MARCO	2	119735334	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1041205	119735334	123464039	182	83625											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671764	125671764	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcacatcgtacgagccagAtgaaggagaaggaatatcca	11	8	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125671764	T	T	125671764	3	4	78	1	0	0	0	0	1	0	0	0	3682	333	12	5	3914	5	CNTNAP5	2	125671764	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5936430	125671764	117527609	183	83626											
GPR148	344561	broad.mit.edu	37	chr2	131487498	131487498	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggcagggctattcccgGgccaggggcaccctgctgat	17	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131487498	T	T	131487498	2	4	78	1	0	0	0	0	0	0	0	1	6718	1219	43	2		2	GPR148	2	131487498	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5815734	131487498	111711875	184	83627											
ARHGEF4	50649	broad.mit.edu	37	chr2	131704353	131704353	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaattgtcctcttccttcaGttagggaggagtgcctacta	9	10	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131704353	C	C	131704353	1	2	78	0	1	0	0	0	0	0	0	0	910	1044	36	4		4	ARHGEF4	2	131704353	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	216855	131704353	111495020	185	83628											
PLEKHB2	55041	broad.mit.edu	37	chr2	131960335	131960335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccaccctccgcgaagcCcagcccagctggatgtacgt	11	17	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131960335	A	A	131960335	1	1	78	0	1	0	0	0	0	0	0	0	12160	638	22	2		2	PLEKHB2	2	131960335	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	255982	131960335	111239038	186	83629											
LRP1B	53353	broad.mit.edu	37	chr2	141079435	141079435	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctatcaaggtagctaaaCtgatgatggaacagataatt	9	6	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141079435	T	T	141079435	1	4	78	0	1	0	0	0	0	0	0	0	9042	580	20	4		4	LRP1B	2	141079435	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	9119100	141079435	102119938	187	83630											
LRP1B	53353	broad.mit.edu	37	chr2	141272159	141272159	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcaaattttgtgtatgctAtaaaatgatagagcatatat	7	3	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141272159	G	G	141272159	1	3	78	0	1	0	0	0	0	0	0	0	9042	464	16	5		5	LRP1B	2	141272159	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	192724	141272159	101927214	188	83631											
LRP1B	53353	broad.mit.edu	37	chr2	141459222	141459222	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatttctaagtttgacaAtgtttttaaaaattggagag	8	2	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141459222	C	C	141459222	1	2	78	0	1	0	0	0	0	0	0	0	9042	116	4	5		5	LRP1B	2	141459222	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	187063	141459222	101740151	189	83632											
ARHGAP15	55843	broad.mit.edu	37	chr2	144460973	144460973	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttccctaaccttccttttTatttttttttccagaaaagc	2	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144460973	A	A	144460973	1	1	78	0	1	0	0	0	0	0	0	0	868	1769	61	5		5	ARHGAP15	2	144460973	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3001751	144460973	98738400	190	83633											
ZEB2	9839	broad.mit.edu	37	chr2	145156031	145156031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggactggtggcatgaaaGtagcagggggaaatgcgctt	16	6	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145156031	T	T	145156031	3	4	78	1	0	0	0	0	1	0	0	0	17750	1029	36	3	933	3	ZEB2	2	145156031	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	695058	145156031	98043342	191	83634											
RND3	390	broad.mit.edu	37	chr2	151328054	151328054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagcctttagaaaagcagCtactttttattttatttatt	6	5	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151328054	A	A	151328054	1	1	78	0	1	0	0	0	0	0	0	0	13532	812	28	3		3	RND3	2	151328054	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6172023	151328054	91871319	192	83635											
NEB	4703	broad.mit.edu	37	chr2	152554264	152554264	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaagatgaagaaaagatAtcgcctgtcaactgtcttaa	7	7	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152554264	G	G	152554264	1	3	78	0	1	0	0	0	0	0	0	0	10397	464	16	5		5	NEB	2	152554264	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1226210	152554264	90645109	193	83636											
DAPL1	92196	broad.mit.edu	37	chr2	159663519	159663519	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatcatgtggccttttcagTgggaaaattttttaagtcct	8	6	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159663519	A	A	159663519	1	1	78	0	1	0	0	0	0	0	0	0	4271	1711	59	5		5	DAPL1	2	159663519	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	7109255	159663519	83535854	194	83637											
GCA	25801	broad.mit.edu	37	chr2	163209060	163209060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaataactgtaaaactcGttatgaaaataactgttcat	5	6	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163209060	T	T	163209060	1	4	78	0	1	0	0	0	0	0	0	0	6345	1160	40	3		3	GCA	2	163209060	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3545541	163209060	79990313	195	83638											
SCN3A	6328	broad.mit.edu	37	chr2	165948941	165948941	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtcatccgtttccaccaTcatggtgaccatgttgaggc	10	12	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165948941	A	A	165948941	3	1	78	1	0	0	0	0	1	0	0	0	14031	1435	50	5	1380	5	SCN3A	2	165948941	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2739881	165948941	77250432	196	83639											
SCN1A	6323	broad.mit.edu	37	chr2	166872012	166872012	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagaggtgattgaattatatCtattacaaagtgccatttta	7	4	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166872012	G	G	166872012	1	3	78	0	1	0	0	0	0	0	0	0	14027	928	32	4		4	SCN1A	2	166872012	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	923071	166872012	76327361	197	83640											
XIRP2	129446	broad.mit.edu	37	chr2	168067310	168067310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgctcggggcgagggtGtgtcagacctccacgaagtg	17	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168067310	T	T	168067310	3	4	78	1	0	0	0	0	1	0	0	0	17557	1377	48	3	638	3	XIRP2	2	168067310	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1195298	168067310	75132063	198	83641											
XIRP2	129446	broad.mit.edu	37	chr2	168101776	168101776	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgagattaaagaagaatctGactatatcagcaccaagaaa	7	6	2	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168101776	T	T	168101776	3	4	78	1	0	0	0	0	1	0	0	0	17557	1290	45	3	3904	3	XIRP2	2	168101776	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	34466	168101776	75097597	199	83642											
STK39	27347	broad.mit.edu	37	chr2	168812166	168812166	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctatgatggcagatctaagCaaaggcacagttggtatggg	13	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168812166	T	T	168812166	1	4	78	0	1	0	0	0	0	0	0	0	15423	725	25	4		4	STK39	2	168812166	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	710390	168812166	74387207	200	83643											
LRP2	4036	broad.mit.edu	37	chr2	170063751	170063751	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaaggcattggtgaaaTaaagatttcctatgggaaaa	9	4	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170063751	C	C	170063751	3	2	78	1	0	0	0	0	1	0	0	0	9043	1406	49	5	7652	5	LRP2	2	170063751	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1251585	170063751	73135622	201	83644											
LRP2	4036	broad.mit.edu	37	chr2	170097780	170097780	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcagatccatagaggcagtCtggatgcccatcacattccc	8	13	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170097780	A	A	170097780	3	1	78	1	0	0	0	0	1	0	0	0	9043	913	32	3	10424	3	LRP2	2	170097780	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	34029	170097780	73101593	202	83645											
LRP2	4036	broad.mit.edu	37	chr2	170115485	170115485	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcatcacttttcaatgacTgtaaaagacatacagtttca	7	8	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170115485	A	A	170115485	1	1	78	0	1	0	0	0	0	0	0	0	9043	1595	55	5		5	LRP2	2	170115485	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	17705	170115485	73083888	203	83646											
LRP2	4036	broad.mit.edu	37	chr2	170148564	170148564	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatttaatctgtatttgtgTtctgaatcttcttaggagaa	7	4	4	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170148564	C	C	170148564	1	2	78	0	1	0	0	0	0	0	0	0	9043	1740	60	5		5	LRP2	2	170148564	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	33079	170148564	73050809	204	83647											
RAPGEF4	11069	broad.mit.edu	37	chr2	173855582	173855582	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaaagaacatgaccaagaTgtcttggtgctggagaaggt	12	6	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173855582	C	C	173855582	2	2	78	1	0	0	0	0	0	0	0	1	13154	1461	51	5		5	RAPGEF4	2	173855582	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3707018	173855582	69343791	205	83648											
RAPGEF4	11069	broad.mit.edu	37	chr2	173891808	173891808	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttcctttattttctaGctggagctaatctatcacac	5	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173891808	T	T	173891808	5	4	78	1	0	0	0	0	0	0	1	0	13154	985	34	3	2493	3	RAPGEF4	2	173891808	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	36226	173891808	69307565	206	83649											
OSBPL6	114880	broad.mit.edu	37	chr2	179201243	179201243	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcaattatgagtgctaCatcttttaccctgattgcct	8	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179201243	T	T	179201243	1	4	78	0	1	0	0	0	0	0	0	0	11375	493	17	4		4	OSBPL6	2	179201243	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5309435	179201243	63998130	207	83650											
TTN	7273	broad.mit.edu	37	chr2	179484542	179484542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttatctttattgagttctGctaaaaagacaacatcagca	5	9	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179484542	T	T	179484542	3	4	78	1	0	0	0	0	1	0	0	0	16861	1319	46	3	61643	3	TTN	2	179484542	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	283299	179484542	63714831	208	83651											
PDE1A	5136	broad.mit.edu	37	chr2	183104919	183104919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttcttttttgtcatccCcattttccgtgtaaaggtag	8	8	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183104919	A	A	183104919	3	1	78	1	0	0	0	0	1	0	0	0	11727	623	22	2	1417	2	PDE1A	2	183104919	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3620377	183104919	60094454	209	83652											
ZNF804A	91752	broad.mit.edu	37	chr2	185798332	185798332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacttttttttaacagagGctcaaggaactgaaacaaag	7	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185798332	T	T	185798332	3	4	78	1	0	0	0	0	1	0	0	0	18299	1194	42	3	268	3	ZNF804A	2	185798332	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2693413	185798332	57401041	210	83653											
ZNF804A	91752	broad.mit.edu	37	chr2	185802533	185802533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaccaagtacttcagttGctccctgcaagcctaaaaag	8	13	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185802533	T	T	185802533	3	4	78	1	0	0	0	0	1	0	0	0	18299	1319	46	3	2424	3	ZNF804A	2	185802533	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4201	185802533	57396840	211	83654											
CALCRL	10203	broad.mit.edu	37	chr2	188247947	188247947	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatcttttggtaacattcaTattgagctgtcatgatttta	6	5	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188247947	A	A	188247947	3	1	78	1	0	0	0	0	1	0	0	0	2606	1406	49	5	1292	5	CALCRL	2	188247947	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2445414	188247947	54951426	212	83655											
COL3A1	1281	broad.mit.edu	37	chr2	189839472	189839472	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacattacttgaaaaataatCgcgttatgtgtgtttttaag	7	4	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189839472	A	A	189839472	1	1	78	0	1	0	0	0	0	0	0	0	3720	899	31	3		3	COL3A1	2	189839472	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1591525	189839472	53359901	213	83656											
COL3A1	1281	broad.mit.edu	37	chr2	189858939	189858939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaagttcggctaatataGtgtctttggtttgttcttag	9	5	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189858939	T	T	189858939	1	4	78	0	1	0	0	0	0	0	0	0	3720	1044	36	3		3	COL3A1	2	189858939	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	19467	189858939	53340434	214	83657											
COL3A1	1281	broad.mit.edu	37	chr2	189868286	189868286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagttccataaagagaatGtaaaaattgtaatcgctcat	6	6	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189868286	T	T	189868286	1	4	78	0	1	0	0	0	0	0	0	0	3720	1392	48	3		3	COL3A1	2	189868286	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9347	189868286	53331087	215	83658											
COL5A2	1290	broad.mit.edu	37	chr2	189906232	189906232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagtctcttgtcaatcgGgctgcacagacatttcttgg	9	10	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189906232	T	T	189906232	1	4	78	0	1	0	0	0	0	0	0	0	3729	1247	43	2		2	COL5A2	2	189906232	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	37946	189906232	53293141	216	83659											
CCDC150	284992	broad.mit.edu	37	chr2	197521919	197521919	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgttagctggaggaggtAacagacctatgacgcgactt	13	7	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197521919	T	T	197521919	1	4	78	0	1	0	0	0	0	0	0	0	2811	377	13	5		5	CCDC150	2	197521919	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	7615687	197521919	45677454	217	83660											
AOX1	316	broad.mit.edu	37	chr2	201535510	201535510	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagacagagtttccacagttCagaaatcatcccacagtgtt	7	10	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201535510	A	A	201535510	1	1	78	0	1	0	0	0	0	0	0	0	731	841	29	3		3	AOX1	2	201535510	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4013591	201535510	41663863	218	83661											
CDK15	65061	broad.mit.edu	37	chr2	202671602	202671602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggatctgattcttctgcGgtaggtctaaaccaataaaa	10	8	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202671602	T	T	202671602	1	4	78	0	1	0	0	0	0	0	0	0	3161	1131	39	1		1	CDK15	2	202671602	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1136092	202671602	40527771	219	83662											
NBEAL1	65065	broad.mit.edu	37	chr2	204009929	204009929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttttcttgttgattttaGgcatttaatattgattaaga	7	2	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204009929	T	T	204009929	1	4	78	0	1	0	0	0	0	0	0	0	10282	1015	35	2		2	NBEAL1	2	204009929	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1338327	204009929	39189444	220	83663											
RAPH1	65059	broad.mit.edu	37	chr2	204302960	204302960	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctctccatgtagtcccaTacttaatgagctttttgtat	5	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204302960	C	C	204302960	1	2	78	0	1	0	0	0	0	0	0	0	13158	1421	49	5		5	RAPH1	2	204302960	3'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	293031	204302960	38896413	221	83664											
PARD3B	117583	broad.mit.edu	37	chr2	206023618	206023618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatccatcattcatggagGcgctgcttttaaggtgggta	11	8	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206023618	T	T	206023618	3	4	78	1	0	0	0	0	1	0	0	0	11538	1203	42	3	1649	3	PARD3B	2	206023618	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1720658	206023618	37175755	222	83665											
FASTKD2	22868	broad.mit.edu	37	chr2	207636107	207636107	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcaattttctaggaggacAttgctgggcttttaggttta	11	5	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207636107	C	C	207636107	1	2	78	0	1	0	0	0	0	0	0	0	5743	232	8	5		5	FASTKD2	2	207636107	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1612489	207636107	35563266	223	83666											
FZD5	7855	broad.mit.edu	37	chr2	208632887	208632887	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatgggcacgaagggctcgcGacacttgcacacgaacgggc	14	12	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	208632887	C	C	208632887	3	2	78	1	0	0	0	0	1	0	0	0	6193	1058	37	4	1184	4	FZD5	2	208632887	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	996780	208632887	34566486	224	83667											
PLEKHM3	389072	broad.mit.edu	37	chr2	208841296	208841296	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgactagcctattaagGggatttttaaagtgaattcc	10	6	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208841296	A	A	208841296	1	1	78	0	1	0	0	0	0	0	0	0	12177	1247	43	4		4	PLEKHM3	2	208841296	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	208409	208841296	34358077	225	83668											
CPS1	1373	broad.mit.edu	37	chr2	211512455	211512455	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggcatcatttaacagtattCattggtaggagagatgtaaa	10	4	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211512455	G	G	211512455	1	3	78	0	1	0	0	0	0	0	0	0	3855	841	29	4		4	CPS1	2	211512455	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2671159	211512455	31686918	226	83669											
ABCA12	26154	broad.mit.edu	37	chr2	215876612	215876612	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttcaatgtactAcgattgaagctgaatgtatt	6	4	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215876612	T	T	215876612	1	4	78	0	1	0	0	0	0	0	0	0	30	406	14	5		5	ABCA12	2	215876612	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	4364157	215876612	27322761	227	83670											
TNS1	7145	broad.mit.edu	37	chr2	218674926	218674926	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggtcagggcaggaaggcaGaaagagaggcctgggcatgg	21	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218674926	A	A	218674926	1	1	78	0	1	0	0	0	0	0	0	0	16466	957	33	4		4	TNS1	2	218674926	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2798314	218674926	24524447	228	83671											
CYP27A1	1593	broad.mit.edu	37	chr2	219677646	219677646	+	Splice_Site	DEL	G	-	-													tcttctctgttgctttcacaGggaagaagctgattgatgag							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	219677646	-	-	219677646	8	5	78	1	0	1	0	1	0	0	1	0	4191	1014	35	0	862	0	CYP27A1	2	219677646	Splice_Site	DEL	G	TCGA-17-Z049-01A-01W-0746-08	1002720	219677646	23521727	229	83672											
CCDC108	255101	broad.mit.edu	37	chr2	219886523	219886523	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggggtggttgtcaacggCctcagggctgccctgctcca	16	12	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219886523	T	T	219886523	3	4	78	1	0	0	0	0	1	0	0	0	2769	739	26	4	2740	4	CCDC108	2	219886523	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	208877	219886523	23312850	230	83673											
SPEG	10290	broad.mit.edu	37	chr2	220338130	220338130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttcccatctgtaaaaaCggaactcaagtgttgatgag	9	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220338130	A	A	220338130	1	1	78	0	1	0	0	0	0	0	0	0	15154	551	19	3		3	SPEG	2	220338130	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	451607	220338130	22861243	231	83674											
SPEG	10290	broad.mit.edu	37	chr2	220342497	220342497	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttttatgacatccaccagGagatcggcaggtgtggggct	13	9	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220342497	T	T	220342497	4	4	78	1	0	0	0	0	0	1	0	0	15154	1175	41	3	4910	3	SPEG	2	220342497	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4367	220342497	22856876	232	83675											
ACCN4	55515	broad.mit.edu	37	chr2	220402063	220402063	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagggccctggagaaggCagggtgggagtgggggccgt	23	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220402063	A	A	220402063	1	1	78	0	1	0	0	0	0	0	0	0	131	725	25	3		3	ACCN4	2	220402063	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	59566	220402063	22797310	233	83676											
SLC4A3	6508	broad.mit.edu	37	chr2	220504305	220504305	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctctgtgggctgtttgGgttgccctggctcacggctg	18	10	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220504305	T	T	220504305	3	4	78	1	0	0	0	0	1	0	0	0	14769	1232	43	2	3280	2	SLC4A3	2	220504305	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	102242	220504305	22695068	234	83677											
COL4A4	1286	broad.mit.edu	37	chr2	227872247	227872247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctctgaaatcttccaGgcagctgccaggtgacataa	10	11	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227872247	T	T	227872247	3	4	78	1	0	0	0	0	1	0	0	0	3725	991	35	2	209	2	COL4A4	2	227872247	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7367942	227872247	15327126	235	83678											
COL4A4	1286	broad.mit.edu	37	chr2	227973939	227973939	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagcagtgctgtacttaCcactaaccctggctctccag	7	15	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227973939	A	A	227973939	5	1	78	1	0	0	0	0	0	0	1	0	3725	521	18	3	4570	3	COL4A4	2	227973939	Splice_Site	SNP	C	TCGA-17-Z049-01A-01W-0746-08	101692	227973939	15225434	236	83679											
COL4A4	1286	broad.mit.edu	37	chr2	228009238	228009238	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatgtacttaccccataTacatattgtacagaaaagag	7	7	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228009238	C	C	228009238	2	2	78	1	0	0	0	0	0	0	0	1	3725	1393	49	5		5	COL4A4	2	228009238	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	35299	228009238	15190135	237	83680											
PID1	55022	broad.mit.edu	37	chr2	230020584	230020584	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcggtgtggtcgtgcacaGctcaatggcctccggctcat	13	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230020584	C	C	230020584	3	2	78	1	0	0	0	0	1	0	0	0	11977	962	34	4	534	4	PID1	2	230020584	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2011346	230020584	13178789	238	83681											
ARMC9	80210	broad.mit.edu	37	chr2	232072915	232072915	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataaaaggaaaaccattgTgtaaaacagtaggcggatct	9	5	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232072915	A	A	232072915	3	1	78	1	0	0	0	0	1	0	0	0	962	1696	59	5	133	5	ARMC9	2	232072915	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2052331	232072915	11126458	239	83682											
UGT1A10	54575	broad.mit.edu	37	chr2	234545533	234545533	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttcttgacttatttttttCgcattgcaggagtttgttta	7	5	1	1	rs145610800		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234545533	T	T	234545533	3	4	78	1	0	0	0	0	1	0	0	0	17071	893	31	4	367	4	UGT1A10	2	234545533	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2472618	234545533	8653840	240	83683											
UGT1A8	54576	broad.mit.edu	37	chr2	234590523	234590523	+	Intron	DEL	C	-	-													aggttctatctgtacttcttCcacttactatattataggag							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	234590523	-	-	234590523	6	5	78	0	1	1	0	1	0	0	0	0	17077	870	30	0		0	UGT1A8	2	234590523	Intron	DEL	C	TCGA-17-Z049-01A-01W-0746-08	44990	234590523	8608850	241	83684											
UGT1A5	54579	broad.mit.edu	37	chr2	234676544	234676544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgaatcttgcgaacaacaCgatacttgttaagtggctac	8	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234676544	A	A	234676544	3	1	78	1	0	0	0	0	1	0	0	0	17074	536	19	3	1059	3	UGT1A5	2	234676544	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	86021	234676544	8522829	242	83685											
COL6A3	1293	broad.mit.edu	37	chr2	238263564	238263564	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagctccggggggtccccttCggccaaagccaccctgtgga	13	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238263564	T	T	238263564	3	4	78	1	0	0	0	0	1	0	0	0	3733	884	31	4	3012	4	COL6A3	2	238263564	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3587020	238263564	4935809	243	83686											
AQP12A	375318	broad.mit.edu	37	chr2	241631351	241631351	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcaggtcttaacgtgtcCctctccttcttctttgccac	7	14	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241631351	T	T	241631351	2	4	78	1	0	0	0	0	0	0	0	1	826	610	22	4		4	AQP12A	2	241631351	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3367787	241631351	1568022	244	83687											
ANO7	50636	broad.mit.edu	37	chr2	242149689	242149689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaccgtgaagggtctcaCgggcctccctgcccccgcag	12	17	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242149689	A	A	242149689	1	1	78	0	1	0	0	0	0	0	0	0	702	551	19	3		3	ANO7	2	242149689	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	518338	242149689	1049684	245	83688											
PDCD1	5133	broad.mit.edu	37	chr2	242794882	242794882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgccgggccctgaccacGctcatgtggaagtcacgccc	12	16	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242794882	T	T	242794882	3	4	78	1	0	0	0	0	1	0	0	0	11709	1078	38	3	555	3	PDCD1	2	242794882	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	645193	242794882	404491	246	83689											
CHL1	10752	broad.mit.edu	37	chr3	419556	419556	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtaactttagaggaccaaGgtatttactgctgttcagct	9	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	419556	A	A	419556	3	1	78	1	0	0	0	0	1	0	0	0	3380	1000	35	4	1861	4	CHL1	3	419556	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08		419556	197602874	247	83690											
CRELD1	78987	broad.mit.edu	37	chr3	9979755	9979755	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagattccctgaagctctGctgccccgcaggcaccttcg	9	17	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9979755	A	A	9979755	3	1	78	1	0	0	0	0	1	0	0	0	3898	1319	46	4	439	4	CRELD1	3	9979755	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9560199	9979755	188042675	248	83691											
IRAK2	3656	broad.mit.edu	37	chr3	10242074	10242074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaccggctcctgaaatcaGgtgtcccattccagccttcc	8	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10242074	T	T	10242074	3	4	78	1	0	0	0	0	1	0	0	0	7893	1000	35	2	309	2	IRAK2	3	10242074	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	262319	10242074	187780356	249	83692											
FGD5	152273	broad.mit.edu	37	chr3	14939087	14939087	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagacacattggcccgggaGgagctgaggcagggcctgag	18	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14939087	C	C	14939087	3	2	78	1	0	0	0	0	1	0	0	0	5893	991	35	4	2838	4	FGD5	3	14939087	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4697013	14939087	183083343	250	83693											
EFHB	151651	broad.mit.edu	37	chr3	19947324	19947324	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacactatgttctcattgaCattgaaaatgagaatggaac	8	7	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19947324	T	T	19947324	1	4	78	0	1	0	0	0	0	0	0	0	4985	493	17	4		4	EFHB	3	19947324	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5008237	19947324	178075106	251	83694											
OXSM	54995	broad.mit.edu	37	chr3	25833576	25833576	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaagttgtagtgtctggcCttggtgtacagtatctctgt	14	6	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25833576	G	G	25833576	1	3	78	0	1	0	0	0	0	0	0	0	11429	696	24	4		4	OXSM	3	25833576	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5886252	25833576	172188854	252	83695											
OSBPL10	114884	broad.mit.edu	37	chr3	31789593	31789593	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaaggttcttctgctgcCcttccacctggttcatcatc	7	15	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31789593	T	T	31789593	3	4	78	1	0	0	0	0	1	0	0	0	11369	623	22	4	1577	4	OSBPL10	3	31789593	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5956017	31789593	166232837	253	83696											
SCN5A	6331	broad.mit.edu	37	chr3	38622698	38622698	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctgaggccgctgccgcagGagaccacagcagaaatccca	11	14	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38622698	T	T	38622698	2	4	78	1	0	0	0	0	0	0	0	1	14035	1161	41	3		3	SCN5A	3	38622698	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6833105	38622698	159399732	254	83697											
SCN11A	11280	broad.mit.edu	37	chr3	38926899	38926899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaacatcagacttctgcaCatcagaacaaaacgaagggg	10	9	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38926899	A	A	38926899	1	1	78	0	1	0	0	0	0	0	0	0	14026	493	17	3		3	SCN11A	3	38926899	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	304201	38926899	159095531	255	83698											
TTC21A	199223	broad.mit.edu	37	chr3	39162658	39162658	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagccatgaaactggacaaGgatggcatggctggtttgac	14	7	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39162658	A	A	39162658	2	1	78	1	0	0	0	0	0	0	0	1	16813	991	35	4		4	TTC21A	3	39162658	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	235759	39162658	158859772	256	83699											
VIPR1	7433	broad.mit.edu	37	chr3	42576999	42576999	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgctccaagtatggtcctCaaactagtagcactggtgtc	10	11	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42576999	T	T	42576999	1	4	78	0	1	0	0	0	0	0	0	0	17296	841	29	4		4	VIPR1	3	42576999	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3414341	42576999	155445431	257	83700											
ZBTB47	92999	broad.mit.edu	37	chr3	42703210	42703210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaagacttcacatccaaGggcaatgtgaaggggtgagg	16	6	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42703210	T	T	42703210	1	4	78	0	1	0	0	0	0	0	0	0	17674	1015	35	2		2	ZBTB47	3	42703210	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	126211	42703210	155319220	258	83701											
ZNF502	91392	broad.mit.edu	37	chr3	44751961	44751961	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgagttctaacaaacatttGatcagtatccaatgaactct	5	9	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44751961	T	T	44751961	1	4	78	0	1	0	0	0	0	0	0	0	18077	1305	45	3		3	ZNF502	3	44751961	5'Flank	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2048751	44751961	153270469	259	83702											
SLC6A20	54716	broad.mit.edu	37	chr3	45823727	45823727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaactacctgtggatgtcCagagctgagagccaggccac	13	11	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45823727	A	A	45823727	1	1	78	0	1	0	0	0	0	0	0	0	14798	609	21	2		2	SLC6A20	3	45823727	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1071766	45823727	152198703	260	83703											
SETD2	29072	broad.mit.edu	37	chr3	47098321	47098321	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattagttacctgtacaattGgtggagttgtctgtgaataa	10	4	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47098321	A	A	47098321	3	1	78	1	0	0	0	0	1	0	0	0	14244	1348	47	4	769	4	SETD2	3	47098321	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1274594	47098321	150924109	261	83704											
SETD2	29072	broad.mit.edu	37	chr3	47103476	47103476	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaatcttcacagctactacTactgtcaacagagaatctgt	5	10	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47103476	A	A	47103476	1	1	78	0	1	0	0	0	0	0	0	0	14244	1537	53	5		5	SETD2	3	47103476	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	5155	47103476	150918954	262	83705											
NME6	10201	broad.mit.edu	37	chr3	48337820	48337820	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgccacttacaacctgCgtagttttgggtaaatcatt	9	9	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48337820	T	T	48337820	1	4	78	0	1	0	0	0	0	0	0	0	10590	783	27	4		4	NME6	3	48337820	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1234344	48337820	149684610	263	83706											
FBXW12	285231	broad.mit.edu	37	chr3	48414408	48414408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctcgaccagtttgagCaccactttgcagaatagcag	8	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48414408	A	A	48414408	1	1	78	0	1	0	0	0	0	0	0	0	5822	725	25	3		3	FBXW12	3	48414408	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	76588	48414408	149608022	264	83707											
P4HTM	54681	broad.mit.edu	37	chr3	49040084	49040084	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcctcctgcccactcccaGgtgcacaattttgaaaactt	7	14	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49040084	A	A	49040084	1	1	78	0	1	0	0	0	0	0	0	0	11454	1015	35	4		4	P4HTM	3	49040084	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	625676	49040084	148982346	265	83708											
MST1	4485	broad.mit.edu	37	chr3	49723949	49723949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataggtcgggccccgagcgAgagctgagatccctctgggg	17	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49723949	T	T	49723949	1	4	78	0	1	0	0	0	0	0	0	0	9984	319	11	5		5	MST1	3	49723949	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	683865	49723949	148298481	266	83709											
GNAI2	2771	broad.mit.edu	37	chr3	50295158	50295158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggatggtgagccagagGggctgtggcagggtgctggg	24	6	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50295158	A	A	50295158	1	1	78	0	1	0	0	0	0	0	0	0	6569	1247	43	4		4	GNAI2	3	50295158	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	571209	50295158	147727272	267	83710											
CACNA2D2	9254	broad.mit.edu	37	chr3	50417050	50417050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtagggtggtgagtggcCtcaggctggccggggtaggc	20	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50417050	A	A	50417050	1	1	78	0	1	0	0	0	0	0	0	0	2575	696	24	2		2	CACNA2D2	3	50417050	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	121892	50417050	147605380	268	83711											
DOCK3	1795	broad.mit.edu	37	chr3	50914979	50914979	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaagatactgactgtgttGacatacagaatggtcaagcg	11	6	1	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50914979	T	T	50914979	1	4	78	0	1	0	0	0	0	0	0	0	4728	1305	45	3		3	DOCK3	3	50914979	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	497929	50914979	147107451	269	83712											
IQCF2	389123	broad.mit.edu	37	chr3	51896742	51896742	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctattgcacccttctagttActaatggtttttcccttgat	5	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51896742	G	G	51896742	1	3	78	0	1	0	0	0	0	0	0	0	7878	406	14	5		5	IQCF2	3	51896742	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	981763	51896742	146125688	270	83713											
DNAH1	25981	broad.mit.edu	37	chr3	52417787	52417787	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgtcctggctgccatgCcacagggctgtgcaagggcc	15	13	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52417787	T	T	52417787	1	4	78	0	1	0	0	0	0	0	0	0	4637	754	26	4		4	DNAH1	3	52417787	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	521045	52417787	145604643	271	83714											
DCP1A	55802	broad.mit.edu	37	chr3	53326037	53326037	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttaaaaccaaggtctctGtagtttcatcccatccagtt	6	11	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53326037	A	A	53326037	1	1	78	0	1	0	0	0	0	0	0	0	4331	1392	48	4		4	DCP1A	3	53326037	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	908250	53326037	144696393	272	83715											
CACNA1D	776	broad.mit.edu	37	chr3	53804040	53804040	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtcccaactgctacacCtggggtaagatcagtgacta	9	13	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53804040	T	T	53804040	3	4	78	1	0	0	0	0	1	0	0	0	2567	681	24	4	4205	4	CACNA1D	3	53804040	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	478003	53804040	144218390	273	83716											
CACNA2D3	55799	broad.mit.edu	37	chr3	54603855	54603855	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagatgagaatggagtcaTtgccttcgactgcaggaacc	11	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54603855	C	C	54603855	3	2	78	1	0	0	0	0	1	0	0	0	2576	1493	52	5	736	5	CACNA2D3	3	54603855	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	799815	54603855	143418575	274	83717											
CACNA2D3	55799	broad.mit.edu	37	chr3	54912971	54912971	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatggaggctccactgcacGctgaggatgcaagatgtcca	12	10	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54912971	C	C	54912971	1	2	78	0	1	0	0	0	0	0	0	0	2576	1102	38	4		4	CACNA2D3	3	54912971	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	309116	54912971	143109459	275	83718											
C3orf63	23272	broad.mit.edu	37	chr3	56683054	56683054	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggggagagaagaaaaaggTatcctcggtctcccaaaggt	13	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56683054	A	A	56683054	3	1	78	1	0	0	0	0	1	0	0	0	2261	1638	57	5	3724	5	C3orf63	3	56683054	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1770083	56683054	141339376	276	83719											
IL17RD	54756	broad.mit.edu	37	chr3	57148729	57148729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccactcaccgagggcccCtggggaccaaagaatggtga	13	12	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57148729	A	A	57148729	3	1	78	1	0	0	0	0	1	0	0	0	7712	681	24	2	1962	2	IL17RD	3	57148729	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	465675	57148729	140873701	277	83720											
FOXP1	27086	broad.mit.edu	37	chr3	71064870	71064870	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaccattccaccagacgagGataaaaaaggcaggaggagc	12	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71064870	A	A	71064870	1	1	78	0	1	0	0	0	0	0	0	0	6086	1189	41	4		4	FOXP1	3	71064870	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	13916141	71064870	126957560	278	83721											
SHQ1	55164	broad.mit.edu	37	chr3	72891313	72891313	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatggtttcacatgatcaccTtatacctgaagtattttctt	5	8	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72891313	A	A	72891313	1	1	78	0	1	0	0	0	0	0	0	0	14405	1624	56	5		5	SHQ1	3	72891313	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1826443	72891313	125131117	279	83722											
PDZRN3	23024	broad.mit.edu	37	chr3	73433528	73433528	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcacgtcgatgctggtgTtgtagttgcggaagccgctg	16	9	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73433528	C	C	73433528	3	2	78	1	0	0	0	0	1	0	0	0	11803	1725	60	5	1015	5	PDZRN3	3	73433528	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	542215	73433528	124588902	280	83723											
CADM2	253559	broad.mit.edu	37	chr3	85961790	85961790	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgaagttatagcaaaggTgcagtaaaatccacggcaaa	9	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85961790	C	C	85961790	1	2	78	0	1	0	0	0	0	0	0	0	2593	1711	59	5		5	CADM2	3	85961790	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	12528262	85961790	112060640	281	83724											
EPHA3	2042	broad.mit.edu	37	chr3	89499354	89499354	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctgtagatgagggctatCgactgccaccccccatggac	11	13	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89499354	A	A	89499354	2	1	78	1	0	0	0	0	0	0	0	1	5210	876	31	3		3	EPHA3	3	89499354	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3537564	89499354	108523076	282	83725											
OR5H6	79295	broad.mit.edu	37	chr3	97983469	97983469	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatatctctctctgaatgcaTggtacaatttttttcccttg	6	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97983469	C	C	97983469	3	2	78	1	0	0	0	0	1	0	0	0	11257	1464	51	5	343	5	OR5H6	3	97983469	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	8484115	97983469	100038961	283	83726											
CBLB	868	broad.mit.edu	37	chr3	105464597	105464597	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagagtaagcacaatgtatCaatttaaaacattatgttaa	5	5	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105464597	G	G	105464597	1	3	78	0	1	0	0	0	0	0	0	0	2727	841	29	4		4	CBLB	3	105464597	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7481128	105464597	92557833	284	83727											
DZIP3	9666	broad.mit.edu	37	chr3	108403123	108403123	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttagacccatacttactGttcctcaaatgcctgcagtt	5	12	2	1	rs148202329		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108403123	C	C	108403123	3	2	78	1	0	0	0	0	1	0	0	0	4905	1377	48	4	3046	4	DZIP3	3	108403123	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2938526	108403123	89619307	285	83728											
MORC1	27136	broad.mit.edu	37	chr3	108818390	108818390	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggcagactgttatcaccGtgtactgtaacaggatgttc	10	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108818390	A	A	108818390	1	1	78	0	1	0	0	0	0	0	0	0	9795	1160	40	4		4	MORC1	3	108818390	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	415267	108818390	89204040	286	83729											
CCDC80	151887	broad.mit.edu	37	chr3	112324420	112324420	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaatcgccatttcctgtctCcgaagttgcatcgaatcaat	7	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112324420	A	A	112324420	2	1	78	1	0	0	0	0	0	0	0	1	2882	842	30	3		3	CCDC80	3	112324420	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3506030	112324420	85698010	287	83730											
CD200R1	131450	broad.mit.edu	37	chr3	112647959	112647959	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcggttttcacataaagCatatggaattcagagagaca	9	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112647959	T	T	112647959	1	4	78	0	1	0	0	0	0	0	0	0	3011	725	25	4		4	CD200R1	3	112647959	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	323539	112647959	85374471	288	83731											
CCDC52	152185	broad.mit.edu	37	chr3	113176218	113176218	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacgctctgaagaagatgaGaggatattagtacaatagga	13	4	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113176218	C	C	113176218	1	2	78	0	1	0	0	0	0	0	0	0	2850	957	33	4		4	CCDC52	3	113176218	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	528259	113176218	84846212	289	83732											
IGSF11	152404	broad.mit.edu	37	chr3	118623708	118623708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaatagcatatacccatGcaactgtaataagcacataa	6	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118623708	T	T	118623708	1	4	78	0	1	0	0	0	0	0	0	0	7668	1334	46	3		3	IGSF11	3	118623708	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5447490	118623708	79398722	290	83733											
POLQ	10721	broad.mit.edu	37	chr3	121186188	121186188	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcccacagagcagatcaTggagatgatgactgctataa	10	8	1	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121186188	C	C	121186188	1	2	78	0	1	0	0	0	0	0	0	0	12303	1479	51	5		5	POLQ	3	121186188	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2562480	121186188	76836242	291	83734											
SEMA5B	54437	broad.mit.edu	37	chr3	122667529	122667529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcccctctgcagtcctaGctccgggaggcagacagggg	15	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122667529	T	T	122667529	3	4	78	1	0	0	0	0	1	0	0	0	14151	971	34	3	3387	3	SEMA5B	3	122667529	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1481341	122667529	75354901	292	83735											
KALRN	8997	broad.mit.edu	37	chr3	124211729	124211729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaggaacaatagtaagaGgtaaccagcacctctccctc	8	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124211729	T	T	124211729	3	4	78	1	0	0	0	0	1	0	0	0	8045	1014	35	2	4952	2	KALRN	3	124211729	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1544200	124211729	73810701	293	83736											
MUC13	56667	broad.mit.edu	37	chr3	124641195	124641195	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactatttgatgaaaagagGgtcatttccattttgtttta	8	4	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124641195	A	A	124641195	1	1	78	0	1	0	0	0	0	0	0	0	10065	1247	43	4		4	MUC13	3	124641195	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	429466	124641195	73381235	294	83737											
TMCC1	23023	broad.mit.edu	37	chr3	129389291	129389291	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcccggatctcctggatctCatgtagtagtgcatcaaatc	8	11	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129389291	A	A	129389291	4	1	78	1	0	0	0	0	0	1	0	0	16115	835	29	3	580	3	TMCC1	3	129389291	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4748096	129389291	68633139	295	83738											
COL6A6	131873	broad.mit.edu	37	chr3	130289995	130289995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctgaacaagggggtccCccaagtcctcattgtgatca	10	14	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130289995	A	A	130289995	3	1	78	1	0	0	0	0	1	0	0	0	3735	623	22	2	2757	2	COL6A6	3	130289995	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	900704	130289995	67732435	296	83739											
ATP2C1	27032	broad.mit.edu	37	chr3	130651122	130651122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctaaaatttttcatttGttggggcttactgttaggtt	8	5	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130651122	T	T	130651122	1	4	78	0	1	0	0	0	0	0	0	0	1147	1392	48	3		3	ATP2C1	3	130651122	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	361127	130651122	67371308	297	83740											
MRPL3	11222	broad.mit.edu	37	chr3	131208916	131208916	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggtaaaattccaatatggaTgtagctttctagaggaaaag	10	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131208916	A	A	131208916	2	1	78	1	0	0	0	0	0	0	0	1	9887	1451	51	5		5	MRPL3	3	131208916	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	557794	131208916	66813514	298	83741											
DNAJC13	23317	broad.mit.edu	37	chr3	132217928	132217928	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaaccacaacataatcaAttttgttttgtttttctaac	3	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132217928	T	T	132217928	1	4	78	0	1	0	0	0	0	0	0	0	4672	116	4	5		5	DNAJC13	3	132217928	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1009012	132217928	65804502	299	83742											
TF	7018	broad.mit.edu	37	chr3	133486935	133486935	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actccagtctctgtaagctgTgtatgggctcaggcctaaac	10	11	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133486935	A	A	133486935	3	1	78	1	0	0	0	0	1	0	0	0	15908	1696	59	5	1599	5	TF	3	133486935	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1269007	133486935	64535495	300	83743											
SLCO2A1	6578	broad.mit.edu	37	chr3	133674019	133674019	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttctggcagagctcggccTgcaagcggctgttgttccct	13	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133674019	A	A	133674019	3	1	78	1	0	0	0	0	1	0	0	0	14840	1580	55	5	1559	5	SLCO2A1	3	133674019	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	187084	133674019	64348411	301	83744											
AMOTL2	51421	broad.mit.edu	37	chr3	134084976	134084976	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagacaagcatctctctatCagggcagctccaaaggggtc	11	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134084976	A	A	134084976	1	1	78	0	1	0	0	0	0	0	0	0	584	841	29	3		3	AMOTL2	3	134084976	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	410957	134084976	63937454	302	83745											
EPHB1	2047	broad.mit.edu	37	chr3	134911681	134911681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggtaagagcaactcagGggtttgatgatgcacttgga	14	6	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134911681	T	T	134911681	1	4	78	0	1	0	0	0	0	0	0	0	5216	1247	43	2		2	EPHB1	3	134911681	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	826705	134911681	63110749	303	83746											
NCK1	4690	broad.mit.edu	37	chr3	136664548	136664548	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcttatgtgaaatttaactAcatggctgagagagaggatg	12	5	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136664548	G	G	136664548	3	3	78	1	0	0	0	0	1	0	0	0	10314	391	14	5	356	5	NCK1	3	136664548	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1752867	136664548	61357882	304	83747											
DZIP1L	199221	broad.mit.edu	37	chr3	137807429	137807429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacccagaacagtgtcagaGgggcacgccttacccaactc	9	14	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137807429	T	T	137807429	1	4	78	0	1	0	0	0	0	0	0	0	4904	1015	35	2		2	DZIP1L	3	137807429	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1142881	137807429	60215001	305	83748											
CEP70	80321	broad.mit.edu	37	chr3	138248145	138248145	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgactgcaacacatttcaTagaaaaataattaactttct	3	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138248145	C	C	138248145	1	2	78	0	1	0	0	0	0	0	0	0	3289	1421	49	5		5	CEP70	3	138248145	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	440716	138248145	59774285	306	83749											
RBP2	5948	broad.mit.edu	37	chr3	139173624	139173624	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagccgcggttctccttctCccccttttgcacacacacaa	5	19	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139173624	T	T	139173624	3	4	78	1	0	0	0	0	1	0	0	0	13264	864	30	4	111	4	RBP2	3	139173624	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	925479	139173624	58848806	307	83750											
ZIC1	7545	broad.mit.edu	37	chr3	147128400	147128400	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggcagatgaggctcggcttCtcgggggacatgtacccgcg	17	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147128400	A	A	147128400	3	1	78	1	0	0	0	0	1	0	0	0	17804	912	32	3	503	3	ZIC1	3	147128400	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7954776	147128400	50894030	308	83751											
GPR149	344758	broad.mit.edu	37	chr3	154071696	154071696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagtctcttcagaaatacGgaaataggagaaagctcttt	8	7	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154071696	T	T	154071696	1	4	78	0	1	0	0	0	0	0	0	0	6719	1131	39	1		1	GPR149	3	154071696	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6943296	154071696	43950734	309	83752											
SI	6476	broad.mit.edu	37	chr3	164780197	164780197	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttgttctggtgtatctcCtagaaggatgtaaaaatcca	8	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164780197	A	A	164780197	4	1	78	1	0	0	0	0	0	1	0	0	14410	690	24	2	4661	2	SI	3	164780197	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	10708501	164780197	33242233	310	83753											
LRRC31	79782	broad.mit.edu	37	chr3	169574747	169574747	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcacaaccatgattaatGgagtgtggaaactgggccag	12	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169574747	A	A	169574747	1	1	78	0	1	0	0	0	0	0	0	0	9073	1363	47	4		4	LRRC31	3	169574747	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4794550	169574747	28447683	311	83754											
ZNF639	51193	broad.mit.edu	37	chr3	179046186	179046186	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtatggattaattcccacaAaattatattctcatccattt	4	8	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179046186	G	G	179046186	1	3	78	0	1	0	0	0	0	0	0	0	18183	29	1	5		5	ZNF639	3	179046186	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	9471439	179046186	18976244	312	83755											
MCCC1	56922	broad.mit.edu	37	chr3	182810432	182810432	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgataaggactcgactgaTaagttcaaggtttttggtaa	11	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182810432	A	A	182810432	1	1	78	0	1	0	0	0	0	0	0	0	9467	1421	49	5		5	MCCC1	3	182810432	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3764246	182810432	15211998	313	83756											
HTR3C	170572	broad.mit.edu	37	chr3	183777831	183777831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccctcacccacctgcctGgtgagggaagccagcactgt	10	16	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183777831	T	T	183777831	3	4	78	1	0	0	0	0	1	0	0	0	7516	1362	47	2	1171	2	HTR3C	3	183777831	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	967399	183777831	14244599	314	83757											
DGKG	1608	broad.mit.edu	37	chr3	186024523	186024523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgagtgtatgggcttgGgaaacatataatgccaggta	14	4	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186024523	T	T	186024523	1	4	78	0	1	0	0	0	0	0	0	0	4509	1247	43	2		2	DGKG	3	186024523	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2246692	186024523	11997907	315	83758											
FETUB	26998	broad.mit.edu	37	chr3	186358877	186358877	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagagactgactgccatgTgctcagaaagaaggcatggc	13	9	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186358877	C	C	186358877	3	2	78	1	0	0	0	0	1	0	0	0	5878	1696	59	5	290	5	FETUB	3	186358877	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	334354	186358877	11663553	316	83759											
FGF12	2257	broad.mit.edu	37	chr3	192441806	192441806	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaaggaagaaagggaggaAgggaaaagggagggagaaag	22	0	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192441806	T	T	192441806	1	4	78	0	1	0	0	0	0	0	0	0	5898	87	3	5		5	FGF12	3	192441806	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	6082929	192441806	5580624	317	83760											
HES1	3280	broad.mit.edu	37	chr3	193854685	193854685	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctccgtggccgggaggagGgacccccagcactctgaagc	15	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193854685	C	C	193854685	1	2	78	0	1	0	0	0	0	0	0	0	7132	1247	43	4		4	HES1	3	193854685	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1412879	193854685	4167745	318	83761											
LRCH3	84859	broad.mit.edu	37	chr3	197544201	197544220	+	Intron	DEL	ATGTGTGTGTGTGTGTCTGT	-	-													aatatttttgattgtccaacAtgtgtgtgtgtgtgtctgtg					rs1273552	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197544220	-	-	197544201	6	5	78	0	1	1	0	1	0	0	0	0	9021	232	8	0		0	LRCH3	3	197544201	Intron	DEL	ATGTGTGTGTGTGTGTCTGT	TCGA-17-Z049-01A-01W-0746-08	3689516	197544201	478229	319	83762											
ZNF595	152687	broad.mit.edu	37	chr4	53463	53463	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatggcggcggcgggaccgAgtctgcgaacggagtccccg	17	12	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53463	T	T	53463	1	4	78	0	1	0	0	0	0	0	0	0	18152	319	11	5		5	ZNF595	4	53463	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08		53463	191100813	320	83763											
ZNF141	7700	broad.mit.edu	37	chr4	337570	337570	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatatatttgtattttcaGgaactcttaacattcaggga	7	5	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	337570	A	A	337570	5	1	78	1	0	0	0	0	0	0	1	0	17856	1014	35	4	9	4	ZNF141	4	337570	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	284107	337570	190816706	321	83764											
TMEM175	84286	broad.mit.edu	37	chr4	946032	946032	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagctggcgccatcctgtGatggccccaccgcatctccc	9	20	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	946032	A	A	946032	1	1	78	0	1	0	0	0	0	0	0	0	16214	1305	45	4		4	TMEM175	4	946032	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	608462	946032	190208244	322	83765											
EVC	2121	broad.mit.edu	37	chr4	5750010	5750010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagccgaagggctattgtgcGattctcaggagctgcaggct	14	10	1	0	rs150923920	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5750010	T	T	5750010	3	4	78	1	0	0	0	0	1	0	0	0	5327	1058	37	3	1105	3	EVC	4	5750010	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4803978	5750010	185404266	323	83766											
CPZ	8532	broad.mit.edu	37	chr4	8621242	8621242	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccacggagcccgacccgctCcgggcgcgcaggcagccctc	14	20	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8621242	T	T	8621242	2	4	78	1	0	0	0	0	0	0	0	1	3871	842	30	4		4	CPZ	4	8621242	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2871232	8621242	182533034	324	83767											
CC2D2A	57545	broad.mit.edu	37	chr4	15591208	15591208	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttgggagcaaggtcgttAtttaatatggaatccctgca	10	7	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15591208	C	C	15591208	3	2	78	1	0	0	0	0	1	0	0	0	2754	449	16	5	4549	5	CC2D2A	4	15591208	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	6969966	15591208	175563068	325	83768											
CCDC149	91050	broad.mit.edu	37	chr4	24878130	24878130	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taattcagggaacaggaaagTcgctgaacagggcagcctaa	12	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24878130	A	A	24878130	1	1	78	0	1	0	0	0	0	0	0	0	2809	1682	58	5		5	CCDC149	4	24878130	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	9286922	24878130	166276146	326	83769											
TLR6	10333	broad.mit.edu	37	chr4	38829072	38829072	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccagggacaaagtttctctCatgaagacaaatctgtatat	8	8	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38829072	A	A	38829072	4	1	78	1	0	0	0	0	0	1	0	0	16078	835	29	3	371	3	TLR6	4	38829072	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	13950942	38829072	152325204	327	83770											
FAM114A1	92689	broad.mit.edu	37	chr4	38937413	38937413	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttaaccactgttggggTaagattacagtcttgaattt	8	6	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38937413	A	A	38937413	5	1	78	1	0	0	0	0	0	0	1	0	5449	1652	57	5	1580	5	FAM114A1	4	38937413	Splice_Site	SNP	T	TCGA-17-Z049-01A-01W-0746-08	108341	38937413	152216863	328	83771											
SLAIN2	57606	broad.mit.edu	37	chr4	48412941	48412941	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgctgcagaatgcagcaaGgaaggaagccctatagcaga	13	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48412941	A	A	48412941	1	1	78	0	1	0	0	0	0	0	0	0	14479	1015	35	4		4	SLAIN2	4	48412941	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9475528	48412941	142741335	329	83772											
CLOCK	9575	broad.mit.edu	37	chr4	56345147	56345147	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactctgatgaaatgaaaaaTatgcattttttaaacaatcc	4	6	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56345147	C	C	56345147	1	2	78	0	1	0	0	0	0	0	0	0	3581	1421	49	5		5	CLOCK	4	56345147	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	7932206	56345147	134809129	330	83773											
PAICS	10606	broad.mit.edu	37	chr4	57325799	57325799	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaaggtaattttaaattaGagaacacaaataaaatgtat	6	2	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57325799	C	C	57325799	1	2	78	0	1	0	0	0	0	0	0	0	11489	957	33	4		4	PAICS	4	57325799	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	980652	57325799	133828477	331	83774											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68812310	68812310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaaaaggaagggcccaCtggttactctcagatagcaa	11	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68812310	A	A	68812310	1	1	78	0	1	0	0	0	0	0	0	0	16362	580	20	3		3	TMPRSS11A	4	68812310	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	11486511	68812310	122341966	332	83775											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68956206	68956206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagtgatgcaaaagacaCattaataaacatttaaaatt	4	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68956206	A	A	68956206	1	1	78	0	1	0	0	0	0	0	0	0	16366	493	17	3		3	TMPRSS11F	4	68956206	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	143896	68956206	122198070	333	83776											
MUC7	4589	broad.mit.edu	37	chr4	71346405	71346405	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcaataatgtactctgGtttctaatcccagcattcca	5	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71346405	T	T	71346405	1	4	78	0	1	0	0	0	0	0	0	0	10075	1276	44	3		3	MUC7	4	71346405	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2390199	71346405	119807871	334	83777											
RCHY1	25898	broad.mit.edu	37	chr4	76416999	76416999	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtgtgaatgtcctgtaaAtgaaataaatgttagtgctt	10	3	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76416999	G	G	76416999	1	3	78	0	1	0	0	0	0	0	0	0	13285	116	4	5		5	RCHY1	4	76416999	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5070594	76416999	114737277	335	83778											
C4orf22	255119	broad.mit.edu	37	chr4	81283878	81283878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagtatgtctcatttgccCactcacctaacaactgattt	4	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81283878	A	A	81283878	1	1	78	0	1	0	0	0	0	0	0	0	2278	609	21	2		2	C4orf22	4	81283878	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4866879	81283878	109870398	336	83779											
HERC3	8916	broad.mit.edu	37	chr4	89579484	89579484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtacccactctgaagtGtattctgcgacagtagaaaa	9	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89579484	T	T	89579484	1	4	78	0	1	0	0	0	0	0	0	0	7126	1392	48	3		3	HERC3	4	89579484	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8295606	89579484	101574792	337	83780											
HPGDS	27306	broad.mit.edu	37	chr4	95223511	95223511	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaattcaagaagaaagagaAgtagctagattttttattca	8	3	2	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95223511	T	T	95223511	1	4	78	0	1	0	0	0	0	0	0	0	7402	87	3	5		5	HPGDS	4	95223511	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5644027	95223511	95930765	338	83781											
UNC5C	8633	broad.mit.edu	37	chr4	96222767	96222767	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgactcacatgcaatgcgCacatacgccttccggctctt	7	14	2	1	rs139673541	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96222767	T	T	96222767	2	4	78	1	0	0	0	0	0	0	0	1	17119	697	25	4		4	UNC5C	4	96222767	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	999256	96222767	94931509	339	83782											
ADH1A	124	broad.mit.edu	37	chr4	100234862	100234862	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacataacaaacagatgatgGgaaatttccattcatcatta	5	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100234862	A	A	100234862	1	1	78	0	1	0	0	0	0	0	0	0	307	1247	43	4		4	ADH1A	4	100234862	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4012095	100234862	90919414	340	83783											
ADH7	131	broad.mit.edu	37	chr4	100336861	100336861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattccttctctttcctgcActatgactttccctgtgtta	4	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100336861	G	G	100336861	1	3	78	0	1	0	0	0	0	0	0	0	313	174	6	5		5	ADH7	4	100336861	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	101999	100336861	90817415	341	83784											
BANK1	55024	broad.mit.edu	37	chr4	102992455	102992455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactcaccattgtgcaccatCcaggtggtaagtgcttggta	10	10	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102992455	A	A	102992455	3	1	78	1	0	0	0	0	1	0	0	0	1314	855	30	3	2290	3	BANK1	4	102992455	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2655594	102992455	88161821	342	83785											
ANK2	287	broad.mit.edu	37	chr4	114290764	114290764	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagttagcacccctGcagaggaggagaagctgtac	14	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114290764	C	C	114290764	3	2	78	1	0	0	0	0	1	0	0	0	621	1319	46	4	11648	4	ANK2	4	114290764	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	11298309	114290764	76863512	343	83786											
CAMK2D	817	broad.mit.edu	37	chr4	114436160	114436160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctattttaaatccataaaCaatatattaaaggagagctt	5	5	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114436160	A	A	114436160	1	1	78	0	1	0	0	0	0	0	0	0	2627	493	17	3		3	CAMK2D	4	114436160	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	145396	114436160	76718116	344	83787											
NDST4	64579	broad.mit.edu	37	chr4	115997337	115997337	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacaagaaggagatggcatCtatgaagatgagcttgtgca	13	5	1	6			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115997337	T	T	115997337	3	4	78	1	0	0	0	0	1	0	0	0	10353	913	32	4	1814	4	NDST4	4	115997337	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1561177	115997337	75156939	345	83788											
QRFPR	84109	broad.mit.edu	37	chr4	122250803	122250803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacagatggagttggaaaatCcaataatttgcacgatagca	9	6	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122250803	A	A	122250803	3	1	78	1	0	0	0	0	1	0	0	0	12986	855	30	3	337	3	QRFPR	4	122250803	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6253466	122250803	68903473	346	83789											
TRPC3	7222	broad.mit.edu	37	chr4	122825509	122825509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgagctattaatcatagCaattagcatgttgagtaaaa	7	4	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122825509	A	A	122825509	3	1	78	1	0	0	0	0	1	0	0	0	16704	710	25	3	564	3	TRPC3	4	122825509	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	574706	122825509	68328767	347	83790											
IL21	59067	broad.mit.edu	37	chr4	123541904	123541904	+	Intron	DEL	A	-	-													tcagggacctagagcaaaagAaaatttgttctgagttattt					rs138637304	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123541904	-	-	123541904	6	5	78	0	1	1	0	1	0	0	0	0	7740	261	9	0		0	IL21	4	123541904	Intron	DEL	A	TCGA-17-Z049-01A-01W-0746-08	716395	123541904	67612372	348	83791											
SLC7A11	23657	broad.mit.edu	37	chr4	139103436	139103436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttatatctagatatacttGttaatatgcattaccaaaac	5	6	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139103436	T	T	139103436	1	4	78	0	1	0	0	0	0	0	0	0	14808	1392	48	3		3	SLC7A11	4	139103436	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	15561532	139103436	52050840	349	83792											
PRSS48	345062	broad.mit.edu	37	chr4	152212601	152212601	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagatttagtcccaggggcaGataactcacaggagagccac	12	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152212601	A	A	152212601	3	1	78	1	0	0	0	0	1	0	0	0	12736	942	33	4	1001	4	PRSS48	4	152212601	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	13109165	152212601	38941675	350	83793											
KIAA0922	23240	broad.mit.edu	37	chr4	154510157	154510157	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tataaaaatggtgacgtctgCaagtacgtctccactgtctt	8	9	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154510157	T	T	154510157	2	4	78	1	0	0	0	0	0	0	0	1	8271	718	25	4		4	KIAA0922	4	154510157	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2297556	154510157	36644119	351	83794											
TLR2	7097	broad.mit.edu	37	chr4	154626008	154626008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtttcttacagtgagcGggatgcctactgggtggaga	14	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154626008	T	T	154626008	3	4	78	1	0	0	0	0	1	0	0	0	16074	1116	39	1	1951	1	TLR2	4	154626008	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	115851	154626008	36528268	352	83795											
DCHS2	54798	broad.mit.edu	37	chr4	155294923	155294923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctcatacctgcaagacGggcaagagggcaagaaggag	14	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155294923	A	A	155294923	1	1	78	0	1	0	0	0	0	0	0	0	4321	1131	39	4		4	DCHS2	4	155294923	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	668915	155294923	35859353	353	83796											
FGA	2243	broad.mit.edu	37	chr4	155510525	155510525	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttctgggaccaatcaggtCagcctgtgagcccctctagc	11	13	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155510525	T	T	155510525	1	4	78	0	1	0	0	0	0	0	0	0	5887	841	29	4		4	FGA	4	155510525	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	215602	155510525	35643751	354	83797											
RXFP1	59350	broad.mit.edu	37	chr4	159529243	159529243	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattccatggtagtctgacaGcctagactattccaatccag	7	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159529243	A	A	159529243	1	1	78	0	1	0	0	0	0	0	0	0	13870	986	34	4		4	RXFP1	4	159529243	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4018718	159529243	31625033	355	83798											
FSTL5	56884	broad.mit.edu	37	chr4	162508658	162508659	+	Nonsense_Mutation	DNP	AG	TT	TT													ttgttcatagccatctgcatAgcaggtgtaattgccaacgt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	162508659	TT	TT	162508658	4	4	78	1	0	0	0	0	0	1	0	0	6140	420	15	5	1615	5	FSTL5	4	162508658	Nonsense_Mutation	DNP	AG	TCGA-17-Z049-01A-01W-0746-08	2979415	162508658	28645618	356	83799											
TLL1	7092	broad.mit.edu	37	chr4	166986903	166986903	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctaaactgcatggcaaattCtgtggcgctgaagtgcctga	11	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166986903	T	T	166986903	2	4	78	1	0	0	0	0	0	0	0	1	16068	912	32	4		4	TLL1	4	166986903	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4478245	166986903	24167373	357	83800											
PALLD	23022	broad.mit.edu	37	chr4	169633102	169633102	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctgcatggttttataatAatttccatacccctgttaca	4	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169633102	C	C	169633102	1	2	78	0	1	0	0	0	0	0	0	0	11501	377	13	5		5	PALLD	4	169633102	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2646199	169633102	21521174	358	83801											
GALNTL6	442117	broad.mit.edu	37	chr4	172735723	172735723	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacttttcttctctgttaCcatttgcaatgaagaggaaa	6	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172735723	A	A	172735723	1	1	78	0	1	0	0	0	0	0	0	0	6287	522	18	3		3	GALNTL6	4	172735723	5'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3102621	172735723	18418553	359	83802											
GALNTL6	442117	broad.mit.edu	37	chr4	173301593	173301593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggaactggttctgccaGcaaaagctgggtttccttga	12	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173301593	T	T	173301593	1	4	78	0	1	0	0	0	0	0	0	0	6287	986	34	3		3	GALNTL6	4	173301593	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	565870	173301593	17852683	360	83803											
GPM6A	2823	broad.mit.edu	37	chr4	176556066	176556066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgcatttatgtgtatGcattgagccgctctttggag	12	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176556066	T	T	176556066	3	4	78	1	0	0	0	0	1	0	0	0	6680	1319	46	3	13	3	GPM6A	4	176556066	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3254473	176556066	14598210	361	83804											
STOX2	56977	broad.mit.edu	37	chr4	184938371	184938371	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgagcgagcgcggagcccccGacaaatgaagctgagaagct	14	12	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184938371	T	T	184938371	2	4	78	1	0	0	0	0	0	0	0	1	15438	1045	37	3		3	STOX2	4	184938371	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8382305	184938371	6215905	362	83805											
LRP2BP	55805	broad.mit.edu	37	chr4	186294187	186294187	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagcccaagtgcaccctggGactccagattcccattgcca	9	15	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186294187	A	A	186294187	3	1	78	1	0	0	0	0	1	0	0	0	9044	1174	41	4	429	4	LRP2BP	4	186294187	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1355816	186294187	4860089	363	83806											
SLC6A19	340024	broad.mit.edu	37	chr5	1214210	1214210	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgtggtgggcctcagtttCcctctcagtcctggggggat	16	10	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1214210	T	T	1214210	1	4	78	0	1	0	0	0	0	0	0	0	14796	870	30	4		4	SLC6A19	5	1214210	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08		1214210	179701050	364	83807											
PAPD7	11044	broad.mit.edu	37	chr5	6748401	6748401	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgattgacagggcctttGccagtgccaagtgccacccg	13	12	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6748401	A	A	6748401	1	1	78	0	1	0	0	0	0	0	0	0	11520	1334	46	4		4	PAPD7	5	6748401	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5534191	6748401	174166859	365	83808											
SEMA5A	9037	broad.mit.edu	37	chr5	9108286	9108286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtcaggcccattctcaCagatcctgcggcgagcttga	10	14	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9108286	A	A	9108286	3	1	78	1	0	0	0	0	1	0	0	0	14150	478	17	3	1217	3	SEMA5A	5	9108286	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2359885	9108286	171806974	366	83809											
CTNND2	1501	broad.mit.edu	37	chr5	11411800	11411800	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagtgatgaacaaacacAtggtatattattcttaaaga	6	4	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11411800	G	G	11411800	1	3	78	0	1	0	0	0	0	0	0	0	4054	232	8	5		5	CTNND2	5	11411800	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2303514	11411800	169503460	367	83810											
CDH18	1016	broad.mit.edu	37	chr5	19543963	19543963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatcttttactgtgataCataaagtagtttaccaattt	5	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19543963	A	A	19543963	1	1	78	0	1	0	0	0	0	0	0	0	3133	493	17	3		3	CDH18	5	19543963	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	8132163	19543963	161371297	368	83811											
PRDM9	56979	broad.mit.edu	37	chr5	23527761	23527761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaccagaggacacacaCaggggagaagccctacgtct	11	13	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23527761	A	A	23527761	3	1	78	1	0	0	0	0	1	0	0	0	12569	478	17	3	2602	3	PRDM9	5	23527761	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3983798	23527761	157387499	369	83812											
CDH10	1008	broad.mit.edu	37	chr5	24536052	24536052	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctcttaaagaaactttcAtatataatttggatgaatat	5	5	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24536052	G	G	24536052	1	3	78	0	1	0	0	0	0	0	0	0	3126	232	8	5		5	CDH10	5	24536052	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1008291	24536052	156379208	370	83813											
ADAMTS12	81792	broad.mit.edu	37	chr5	33630739	33630739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgatgaacactgggaaGtcttatcttttcgtttcatg	8	7	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33630739	T	T	33630739	1	4	78	0	1	0	0	0	0	0	0	0	257	1044	36	3		3	ADAMTS12	5	33630739	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9094687	33630739	147284521	371	83814											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658599	33658599	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcaattttgaattcaCtgagatgattctgattttac	8	6	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33658599	T	T	33658599	1	4	78	0	1	0	0	0	0	0	0	0	257	580	20	4		4	ADAMTS12	5	33658599	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	27860	33658599	147256661	372	83815											
PRLR	5618	broad.mit.edu	37	chr5	35081556	35081556	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccatctggataaacctgCcaaatatgacatcaaaaagg	7	10	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35081556	G	G	35081556	1	3	78	0	1	0	0	0	0	0	0	0	12637	754	26	4		4	PRLR	5	35081556	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1422957	35081556	145833704	373	83816											
WDR70	55100	broad.mit.edu	37	chr5	37381788	37381788	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagtcgcaaaacactggGtaagaagctcagatatttgt	10	6	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37381788	T	T	37381788	5	4	78	1	0	0	0	0	0	0	1	0	17448	1275	44	3	186	3	WDR70	5	37381788	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2300232	37381788	143533472	374	83817											
EGFLAM	133584	broad.mit.edu	37	chr5	38435412	38435412	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagactgtagacaaagaaagTgaggattatgatcagtgtca	11	5	2	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38435412	C	C	38435412	1	2	78	0	1	0	0	0	0	0	0	0	5006	1711	59	5		5	EGFLAM	5	38435412	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1053624	38435412	142479848	375	83818											
MGC42105	167359	broad.mit.edu	37	chr5	43277447	43277447	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgagcaggggtgacgagtGagaaccttgctcccattgca	15	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43277447	T	T	43277447	1	4	78	0	1	0	0	0	0	0	0	0	9645	1305	45	3		3	MGC42105	5	43277447	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4842035	43277447	137637813	376	83819											
ISL1	3670	broad.mit.edu	37	chr5	50683298	50683298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctccccgctctgggccgCctccgctcccccctcccccg	7	26	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683298	A	A	50683298	1	1	78	0	1	0	0	0	0	0	0	0	7926	754	26	3		3	ISL1	5	50683298	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7405851	50683298	130231962	377	83820											
ITGA1	3672	broad.mit.edu	37	chr5	52201520	52201520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgattatcttggccatttAaaaagagtcttaatttatta	5	4	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52201520	G	G	52201520	1	3	78	0	1	0	0	0	0	0	0	0	7942	377	13	5		5	ITGA1	5	52201520	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1518222	52201520	128713740	378	83821											
ITGA1	3672	broad.mit.edu	37	chr5	52205908	52205908	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacaaatggctgttaataGcactgatttagtatacttta	7	5	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52205908	A	A	52205908	1	1	78	0	1	0	0	0	0	0	0	0	7942	986	34	4		4	ITGA1	5	52205908	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4388	52205908	128709352	379	83822											
NDUFS4	4724	broad.mit.edu	37	chr5	52942075	52942075	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtaggatatcactactTtaactggagttccagaagag	9	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52942075	G	G	52942075	3	3	78	1	0	0	0	0	1	0	0	0	10389	1838	64	5	200	5	NDUFS4	5	52942075	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	736167	52942075	127973185	380	83823											
CDC20B	166979	broad.mit.edu	37	chr5	54420672	54420672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgactttcagcggttggcCctgtgcactggcacctggat	12	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54420672	A	A	54420672	3	1	78	1	0	0	0	0	1	0	0	0	3090	623	22	2	401	2	CDC20B	5	54420672	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1478597	54420672	126494588	381	83824											
CCNO	10309	broad.mit.edu	37	chr5	54527339	54527339	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcgccgcctccgggtggtctCccagtcgcaagtccacgggc	14	17	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54527339	G	G	54527339	3	3	78	1	0	0	0	0	1	0	0	0	2963	855	30	4	139	4	CCNO	5	54527339	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	106667	54527339	126387921	382	83825											
FLJ37543	285668	broad.mit.edu	37	chr5	60999888	60999888	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccctgtggtgttgggaCaacttgctcatggagttgca	13	10	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60999888	T	T	60999888	1	4	78	0	1	0	0	0	0	0	0	0	5986	493	17	4		4	FLJ37543	5	60999888	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6472549	60999888	119915372	383	83826											
MRPS36	92259	broad.mit.edu	37	chr5	68513742	68513742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcttgggcggtagggacGgtgctgactatggcgacggc	18	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68513742	T	T	68513742	1	4	78	0	1	0	0	0	0	0	0	0	9939	1131	39	1		1	MRPS36	5	68513742	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7513854	68513742	112401518	384	83827											
IQGAP2	10788	broad.mit.edu	37	chr5	75979002	75979002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttactgagtgaattgctGgggtcgctgggagaggtgcc	17	7	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75979002	T	T	75979002	2	4	78	1	0	0	0	0	0	0	0	1	7885	1335	47	2		2	IQGAP2	5	75979002	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7465260	75979002	104936258	385	83828											
XRCC4	7518	broad.mit.edu	37	chr5	82576365	82576365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgacattctgcacaggcCcctgcactggagcccacact	8	16	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82576365	T	T	82576365	1	4	78	0	1	0	0	0	0	0	0	0	17582	638	22	4		4	XRCC4	5	82576365	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6597363	82576365	98338895	386	83829											
VCAN	1462	broad.mit.edu	37	chr5	82834200	82834200	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagattctactcctgtctTtacagaaacaaatacattag	5	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82834200	C	C	82834200	3	2	78	1	0	0	0	0	1	0	0	0	17265	1841	64	5	5404	5	VCAN	5	82834200	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	257835	82834200	98081060	387	83830											
VCAN	1462	broad.mit.edu	37	chr5	82875805	82875805	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttcctttagtcgcttGcggccagccccctgttgtag	10	13	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82875805	A	A	82875805	3	1	78	1	0	0	0	0	1	0	0	0	17265	1319	46	4	9937	4	VCAN	5	82875805	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	41605	82875805	98039455	388	83831											
GPR98	84059	broad.mit.edu	37	chr5	90021007	90021007	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgaagaaaagccttctctTaacagtgtgtttacattcac	6	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90021007	G	G	90021007	2	3	78	1	0	0	0	0	0	0	0	1	6787	1741	61	5		5	GPR98	5	90021007	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	7145202	90021007	90894253	389	83832											
GPR98	84059	broad.mit.edu	37	chr5	90085636	90085636	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcattaccttctttgtcAgaagagtcaagggcaccttt	8	10	4	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90085636	T	T	90085636	4	4	78	1	0	0	0	0	0	1	0	0	6787	180	7	5	14285	5	GPR98	5	90085636	Nonsense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	64629	90085636	90829624	390	83833											
GPR98	84059	broad.mit.edu	37	chr5	90106258	90106258	+	Frame_Shift_Del	DEL	G	-	-													attttgagcctgttcagaatGgggaactgttttttcaaaaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90106258	-	-	90106258	7	5	78	1	0	1	0	1	0	0	0	0	6787	1348	47	0	15475	0	GPR98	5	90106258	Frame_Shift_Del	DEL	G	TCGA-17-Z049-01A-01W-0746-08	20622	90106258	90809002	391	83834											
NR2F1	7025	broad.mit.edu	37	chr5	92921132	92921132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccatcgaccagcaccacCgcaaccagtgccaatactgc	7	18	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92921132	A	A	92921132	3	1	78	1	0	0	0	0	1	0	0	0	10722	652	23	1	405	1	NR2F1	5	92921132	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2814874	92921132	87994128	392	83835											
CAST	831	broad.mit.edu	37	chr5	96062477	96062477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaaataaaattatacctGgggctgtgctcttatattag	8	5	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96062477	T	T	96062477	1	4	78	0	1	0	0	0	0	0	0	0	2710	1363	47	2		2	CAST	5	96062477	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3141345	96062477	84852783	393	83836											
LNPEP	4012	broad.mit.edu	37	chr5	96315554	96315554	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatatcatggacagatcgcCattgttgcccccgaagccct	9	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96315554	T	T	96315554	2	4	78	1	0	0	0	0	0	0	0	1	8938	581	21	4		4	LNPEP	5	96315554	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	253077	96315554	84599706	394	83837											
LIX1	167410	broad.mit.edu	37	chr5	96478365	96478365	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgaatttctgcagctcaTtgatgcactggattaccaag	10	9	2	2	rs62624472	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96478365	A	A	96478365	1	1	78	0	1	0	0	0	0	0	0	0	8905	1508	52	5		5	LIX1	5	96478365	5'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	162811	96478365	84436895	395	83838											
AQPEP	206338	broad.mit.edu	37	chr5	115298845	115298845	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggccgcgtgcccgtggaCgacgtgtggttcgcgctgga	19	11	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115298845	T	T	115298845	2	4	78	1	0	0	0	0	0	0	0	1	836	535	19	4		4	AQPEP	5	115298845	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	18820480	115298845	65616415	396	83839											
HSD17B4	3295	broad.mit.edu	37	chr5	118837613	118837613	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagaagccaaacagagataGataacttggagagaaatgtg	12	4	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118837613	T	T	118837613	1	4	78	0	1	0	0	0	0	0	0	0	7453	957	33	3		3	HSD17B4	5	118837613	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3538768	118837613	62077647	397	83840											
HSD17B4	3295	broad.mit.edu	37	chr5	118877683	118877683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttaaagactacgccaaGctctgaagggcacactacac	7	12	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118877683	T	T	118877683	3	4	78	1	0	0	0	0	1	0	0	0	7453	962	34	3	2299	3	HSD17B4	5	118877683	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	40070	118877683	62037577	398	83841											
SNX2	6643	broad.mit.edu	37	chr5	122163148	122163148	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcgaaaagaagtgggaagAtttgaggcatgtataataat	11	2	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122163148	T	T	122163148	3	4	78	1	0	0	0	0	1	0	0	0	15005	330	12	5	1481	5	SNX2	5	122163148	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3285465	122163148	58752112	399	83842											
MEGF10	84466	broad.mit.edu	37	chr5	126734329	126734329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgagggtcatgtgtctgGgaaataacagtgtcctttgt	12	8	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126734329	T	T	126734329	1	4	78	0	1	0	0	0	0	0	0	0	9553	1247	43	2		2	MEGF10	5	126734329	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4571181	126734329	54180931	400	83843											
MEGF10	84466	broad.mit.edu	37	chr5	126776464	126776464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttatggaaaagattgtgCactgatatgccaatgtcaaa	9	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126776464	A	A	126776464	3	1	78	1	0	0	0	0	1	0	0	0	9553	710	25	3	2333	3	MEGF10	5	126776464	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	42135	126776464	54138796	401	83844											
SLC27A6	28965	broad.mit.edu	37	chr5	128368829	128368829	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcaacaggaacattcaaaCtattgaagcatcagttggtg	9	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128368829	G	G	128368829	3	3	78	1	0	0	0	0	1	0	0	0	14644	564	20	4	1752	4	SLC27A6	5	128368829	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1592365	128368829	52546431	402	83845											
ADAMTS19	171019	broad.mit.edu	37	chr5	128862186	128862186	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgcttggaattttttcaAgaaaactctaaggaagacat	9	6	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128862186	G	G	128862186	1	3	78	0	1	0	0	0	0	0	0	0	264	87	3	5		5	ADAMTS19	5	128862186	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	493357	128862186	52053074	403	83846											
ADAMTS19	171019	broad.mit.edu	37	chr5	128956608	128956608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccattaactcatggtgtaGtttgggacatgttatttaac	8	6	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128956608	T	T	128956608	1	4	78	0	1	0	0	0	0	0	0	0	264	1044	36	3		3	ADAMTS19	5	128956608	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	94422	128956608	51958652	404	83847											
CHSY3	337876	broad.mit.edu	37	chr5	129521158	129521158	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaaaaaagactggatttTggagagactatggatatggc	11	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129521158	C	C	129521158	3	2	78	1	0	0	0	0	1	0	0	0	3444	1812	63	5	2333	5	CHSY3	5	129521158	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	564550	129521158	51394102	405	83848											
RAPGEF6	51735	broad.mit.edu	37	chr5	130897670	130897670	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattctttaaagttcttaCcacaatcatttctgaaggct	5	9	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130897670	A	A	130897670	5	1	78	1	0	0	0	0	0	0	1	0	13156	521	18	3	5035	3	RAPGEF6	5	130897670	Splice_Site	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1376512	130897670	50017590	406	83849											
KIF3A	11127	broad.mit.edu	37	chr5	132062049	132062049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaattcccttttaccttGtatcaccctccgcttttgca	4	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132062049	T	T	132062049	3	4	78	1	0	0	0	0	1	0	0	0	8370	1377	48	3	1737	3	KIF3A	5	132062049	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1164379	132062049	48853211	407	83850											
HNRNPA0	10949	broad.mit.edu	37	chr5	137089259	137089259	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttcacctccacgcgaTggccctgaatcggatggaac	9	14	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137089259	A	A	137089259	3	1	78	1	0	0	0	0	1	0	0	0	7323	1464	51	5	424	5	HNRNPA0	5	137089259	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	5027210	137089259	43826001	408	83851											
CTNNA1	1495	broad.mit.edu	37	chr5	138260225	138260225	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acattttggaagatgtgaacAaatgtgtcattgctctccaa	8	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138260225	T	T	138260225	4	4	78	1	0	0	0	0	0	1	0	0	4046	131	5	5	1615	5	CTNNA1	5	138260225	Nonsense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1170966	138260225	42655035	409	83852											
TMEM173	340061	broad.mit.edu	37	chr5	138858259	138858259	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggcagcgcctccaaaagCcctccccacccctcctctta	7	20	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138858259	T	T	138858259	1	4	78	0	1	0	0	0	0	0	0	0	16212	754	26	4		4	TMEM173	5	138858259	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	598034	138858259	42057001	410	83853											
NRG2	9542	broad.mit.edu	37	chr5	139232109	139232109	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctcagtttctctcctgatGacatggtctgtggctggcac	11	11	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139232109	T	T	139232109	2	4	78	1	0	0	0	0	0	0	0	1	10743	1277	45	3		3	NRG2	5	139232109	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	373850	139232109	41683151	411	83854											
WDR55	54853	broad.mit.edu	37	chr5	140048960	140048960	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagtggtgggcagtgtgggCcagcacactggggagcctgt	19	9	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140048960	G	G	140048960	2	3	78	1	0	0	0	0	0	0	0	1	17434	726	26	4		4	WDR55	5	140048960	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	816851	140048960	40866300	412	83855											
PCDHA1	56147	broad.mit.edu	37	chr5	140167592	140167592	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcgcctcgagtgggtggcActattggtgcagtcagtgag	17	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140167592	C	C	140167592	3	2	78	1	0	0	0	0	1	0	0	0	11613	159	6	5	1719	5	PCDHA1	5	140167592	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	118632	140167592	40747668	413	83856											
PCDHB1	29930	broad.mit.edu	37	chr5	140432991	140432991	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaaattgatcattcttgttCaggatcacggccaaccagct	8	10	4	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140432991	G	G	140432991	3	3	78	1	0	0	0	0	1	0	0	0	11628	827	29	4	1938	4	PCDHB1	5	140432991	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	265399	140432991	40482269	414	83857											
PCDHB10	56126	broad.mit.edu	37	chr5	140572514	140572514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggatataaatgatcacgCgccagtatttcaggacaaag	10	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140572514	A	A	140572514	3	1	78	1	0	0	0	0	1	0	0	0	11629	768	27	3	391	3	PCDHB10	5	140572514	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	139523	140572514	40342746	415	83858											
PCDHB12	56124	broad.mit.edu	37	chr5	140590240	140590240	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccgggctacctggtgacCaaggtggtggcggtggacgg	20	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140590240	A	A	140590240	2	1	78	1	0	0	0	0	0	0	0	1	11631	581	21	2		2	PCDHB12	5	140590240	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	17726	140590240	40325020	416	83859											
PCDHGB7	56099	broad.mit.edu	37	chr5	140798221	140798221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctccatcctgagagtgaaGgccactgaccaggacgaggg	13	12	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140798221	T	T	140798221	3	4	78	1	0	0	0	0	1	0	0	0	11662	991	35	2	797	2	PCDHGB7	5	140798221	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	207981	140798221	40117039	417	83860											
ARAP3	64411	broad.mit.edu	37	chr5	141036183	141036183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccgcaacagccccaccCgtgggctctcacgtcggata	10	17	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141036183	A	A	141036183	3	1	78	1	0	0	0	0	1	0	0	0	842	652	23	1	985	1	ARAP3	5	141036183	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	237962	141036183	39879077	418	83861											
PPP2R2B	5521	broad.mit.edu	37	chr5	146236139	146236139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgtcttgggttctccCttggctcctgtgacaaacat	8	12	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146236139	A	A	146236139	1	1	78	0	1	0	0	0	0	0	0	0	12486	696	24	2		2	PPP2R2B	5	146236139	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5199956	146236139	34679121	419	83862											
PDE6A	5145	broad.mit.edu	37	chr5	149286877	149286877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagttatattacttaccaGgccattctgggcaacataag	7	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149286877	T	T	149286877	3	4	78	1	0	0	0	0	1	0	0	0	11739	991	35	2	1583	2	PDE6A	5	149286877	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3050738	149286877	31628383	420	83863											
SGCD	6444	broad.mit.edu	37	chr5	156186253	156186253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagatgctgcgaaaatcaGgctacctagactgcctcatg	10	10	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156186253	T	T	156186253	3	4	78	1	0	0	0	0	1	0	0	0	14314	1000	35	2	827	2	SGCD	5	156186253	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6899376	156186253	24729007	421	83864											
CYFIP2	26999	broad.mit.edu	37	chr5	156787323	156787323	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccagtatgtgaaaacaCtgatagaggtgatgcccaag	10	8	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156787323	T	T	156787323	2	4	78	1	0	0	0	0	0	0	0	1	4171	564	20	4		4	CYFIP2	5	156787323	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	601070	156787323	24127937	422	83865											
ADAM19	8728	broad.mit.edu	37	chr5	156899148	156899148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctcttttacaaatggGgaaactgagtttttgggggt	13	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156899148	T	T	156899148	1	4	78	0	1	0	0	0	0	0	0	0	240	1247	43	2		2	ADAM19	5	156899148	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	111825	156899148	24016112	423	83866											
ATP10B	23120	broad.mit.edu	37	chr5	160025569	160025569	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaaaaaaattaaaaatAcccactagtctggcccaaca	3	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160025569	T	T	160025569	1	4	78	0	1	0	0	0	0	0	0	0	1121	406	14	5		5	ATP10B	5	160025569	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3126421	160025569	20889691	424	83867											
ODZ2	57451	broad.mit.edu	37	chr5	167689762	167689762	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaatacccagagcttgcaGacagtagcagcaacatccag	9	12	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167689762	T	T	167689762	3	4	78	1	0	0	0	0	1	0	0	0	10930	942	33	3	8359	3	ODZ2	5	167689762	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7664193	167689762	13225498	425	83868											
SLIT3	6586	broad.mit.edu	37	chr5	168127701	168127701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccctgaggagcaaaagagGgagaagcacctggttagggg	17	7	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168127701	T	T	168127701	1	4	78	0	1	0	0	0	0	0	0	0	14855	1247	43	2		2	SLIT3	5	168127701	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	437939	168127701	12787559	426	83869											
SLIT3	6586	broad.mit.edu	37	chr5	168179857	168179857	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacgagtttttaagtggacaGacagatagatgagcctggct	13	6	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168179857	T	T	168179857	1	4	78	0	1	0	0	0	0	0	0	0	14855	957	33	3		3	SLIT3	5	168179857	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	52156	168179857	12735403	427	83870											
SLIT3	6586	broad.mit.edu	37	chr5	168187998	168187998	+	Intron	DEL	C	-	-													ggacgaggcccctccttccaCcccccatggctttgctgcat							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	168187998	-	-	168187998	6	5	78	0	1	1	0	1	0	0	0	0	14855	522	18	0		0	SLIT3	5	168187998	Intron	DEL	C	TCGA-17-Z049-01A-01W-0746-08	8141	168187998	12727262	428	83871											
SLIT3	6586	broad.mit.edu	37	chr5	168310446	168310446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaggctgctgcctctgcGgtcagagtgtatggcggctg	15	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168310446	T	T	168310446	1	4	78	0	1	0	0	0	0	0	0	0	14855	1131	39	1		1	SLIT3	5	168310446	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	122448	168310446	12604814	429	83872											
LCP2	3937	broad.mit.edu	37	chr5	169677861	169677861	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattggttgttgtttttttaGagctgtctctgaccagaaat	10	5	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169677861	A	A	169677861	3	1	78	1	0	0	0	0	1	0	0	0	8764	942	33	4	257	4	LCP2	5	169677861	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1367415	169677861	11237399	430	83873											
STK10	6793	broad.mit.edu	37	chr5	171509412	171509412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatccgcctggcctcctccCggcggcgcacggcatggtct	14	17	1	0	rs143931389		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171509412	A	A	171509412	3	1	78	1	0	0	0	0	1	0	0	0	15404	652	23	1	1031	1	STK10	5	171509412	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1831551	171509412	9405848	431	83874											
CDHR2	54825	broad.mit.edu	37	chr5	175995737	175995737	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatgaccctctgacctatggGatgagcggccccaatgccta	10	13	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175995737	C	C	175995737	2	2	78	1	0	0	0	0	0	0	0	1	3149	1161	41	4		4	CDHR2	5	175995737	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4486325	175995737	4919523	432	83875											
FGFR4	2264	broad.mit.edu	37	chr5	176520134	176520134	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtccatgtgcgagGgcagaggaggaccccacatg	16	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176520134	C	C	176520134	1	2	78	0	1	0	0	0	0	0	0	0	5925	1247	43	4		4	FGFR4	5	176520134	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	524397	176520134	4395126	433	83876											
NHP2	55651	broad.mit.edu	37	chr5	177580635	177580635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacccgcgcacccatccCggccacgccgccgtccgcct	8	25	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177580635	A	A	177580635	1	1	78	0	1	0	0	0	0	0	0	0	10504	667	23	1		1	NHP2	5	177580635	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1060501	177580635	3334625	434	83877											
GRM6	2916	broad.mit.edu	37	chr5	178418345	178418345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaggcagggagagtgtGtaaggtggcgatgtgcaaga	20	3	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178418345	T	T	178418345	1	4	78	0	1	0	0	0	0	0	0	0	6867	1392	48	3		3	GRM6	5	178418345	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	837710	178418345	2496915	435	83878											
ZNF354C	30832	broad.mit.edu	37	chr5	178505712	178505712	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttggcttgaaacagaagcAttgcctcatagacaggacat	9	9	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178505712	G	G	178505712	2	3	78	1	0	0	0	0	0	0	0	1	17992	204	8	5		5	ZNF354C	5	178505712	Silent	SNP	A	TCGA-17-Z049-01A-01W-0746-08	87367	178505712	2409548	436	83879											
ADAMTS2	9509	broad.mit.edu	37	chr5	178553152	178553152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaggcagagagctcgacGggggtcggtggggcagcatg	20	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178553152	T	T	178553152	1	4	78	0	1	0	0	0	0	0	0	0	265	1131	39	1		1	ADAMTS2	5	178553152	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	47440	178553152	2362108	437	83880											
CAGE1	285782	broad.mit.edu	37	chr6	7327238	7327238	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatatggaaaaggggtgcAaagtaagcctatagatagat	11	4	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7327238	G	G	7327238	1	3	78	0	1	0	0	0	0	0	0	0	2598	145	5	5		5	CAGE1	6	7327238	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08		7327238	163787829	438	83881											
SYCP2L	221711	broad.mit.edu	37	chr6	10927691	10927691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattttaaagttgggcatcCaggggagacatcacatgtcg	11	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10927691	A	A	10927691	1	1	78	0	1	0	0	0	0	0	0	0	15552	609	21	2		2	SYCP2L	6	10927691	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3600453	10927691	160187376	439	83882											
KDM1B	221656	broad.mit.edu	37	chr6	18171810	18171810	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattgtgttgatcattctgtCaaggttgtatttgcatgcat	9	5	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18171810	G	G	18171810	1	3	78	0	1	0	0	0	0	0	0	0	8193	841	29	4		4	KDM1B	6	18171810	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7244119	18171810	152943257	440	83883											
FAM65B	9750	broad.mit.edu	37	chr6	24870975	24870975	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtctcaaactcctaagctCaagtgatccacccacctcgg	7	15	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24870975	T	T	24870975	1	4	78	0	1	0	0	0	0	0	0	0	5651	841	29	4		4	FAM65B	6	24870975	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6699165	24870975	146244092	441	83884											
HIST1H2BI	8346	broad.mit.edu	37	chr6	26273485	26273485	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgaccatcacttccagggaGatccaaacggctgtgcgcct	10	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26273485	T	T	26273485	3	4	78	1	0	0	0	0	1	0	0	0	7215	933	33	3	284	3	HIST1H2BI	6	26273485	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1402510	26273485	144841582	442	83885											
HIST1H2AJ	8331	broad.mit.edu	37	chr6	27782408	27782408	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccgctccgcatagttgccTttgcggagcaggcgatgcac	12	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27782408	A	A	27782408	3	1	78	1	0	0	0	0	1	0	0	0	7203	1606	56	5	279	5	HIST1H2AJ	6	27782408	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1508923	27782408	143332659	443	83886											
OR2J2	26707	broad.mit.edu	37	chr6	29141262	29141262	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcaatgaagcatataaaggGaactgtataaaaattctact	6	6	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29141262	A	A	29141262	1	1	78	0	1	0	0	0	0	0	0	0	11097	1189	41	4		4	OR2J2	6	29141262	5'Flank	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1358854	29141262	141973805	444	83887											
MOG	4340	broad.mit.edu	37	chr6	29638178	29638178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcgaagactagcaggtgCagtggctgggcagcaggcaa	15	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29638178	A	A	29638178	1	1	78	0	1	0	0	0	0	0	0	0	9787	725	25	3		3	MOG	6	29638178	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	496916	29638178	141476889	445	83888											
MOG	4340	broad.mit.edu	37	chr6	29638301	29638301	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggatttccttattcctctGtccccatgcccaaccccagg	7	16	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29638301	C	C	29638301	1	2	78	0	1	0	0	0	0	0	0	0	9787	1392	48	4		4	MOG	6	29638301	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	123	29638301	141476766	446	83889											
TRIM10	10107	broad.mit.edu	37	chr6	30121679	30121679	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtgattcagccagggatCaagtccacatggtacttggg	13	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30121679	G	G	30121679	1	3	78	0	1	0	0	0	0	0	0	0	16610	841	29	4		4	TRIM10	6	30121679	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	483378	30121679	140993388	447	83890											
TAP2	6891	broad.mit.edu	37	chr6	32805380	32805380	+	Frame_Shift_Del	DEL	C	-	-													catgggggtcaaaatcacctCccaggatgtcaatcacacga							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32805380	-	-	32805380	7	5	78	1	0	1	0	1	0	0	0	0	15670	855	30	0	1643	0	TAP2	6	32805380	Frame_Shift_Del	DEL	C	TCGA-17-Z049-01A-01W-0746-08	2683701	32805380	138309687	448	83891											
PSMB9	5698	broad.mit.edu	37	chr6	32823998	32823998	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagggtgagtaaaagtgaaGatgtatgcatttggaaagaa	14	2	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32823998	T	T	32823998	1	4	78	0	1	0	0	0	0	0	0	0	12790	957	33	3		3	PSMB9	6	32823998	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	18618	32823998	138291069	449	83892											
HLA-DOA	3111	broad.mit.edu	37	chr6	32975646	32975646	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaggggtctgggaagaccTggagcctcctgggaaagaaa	15	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32975646	A	A	32975646	1	1	78	0	1	0	0	0	0	0	0	0	7267	1595	55	5		5	HLA-DOA	6	32975646	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	151648	32975646	138139421	450	83893											
ITPR3	3710	broad.mit.edu	37	chr6	33652605	33652605	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgccggctggacaaggAgggggccaccaagttggtat	16	10	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33652605	C	C	33652605	3	2	78	1	0	0	0	0	1	0	0	0	7992	304	11	5	5346	5	ITPR3	6	33652605	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	676959	33652605	137462462	451	83894											
ITPR3	3710	broad.mit.edu	37	chr6	33661487	33661487	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcccagatgatcaaggtgtGagcaggggctgtgccaggcc	17	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33661487	T	T	33661487	1	4	78	0	1	0	0	0	0	0	0	0	7992	1305	45	3		3	ITPR3	6	33661487	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8882	33661487	137453580	452	83895											
SLC26A8	116369	broad.mit.edu	37	chr6	35923158	35923158	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccttgatttttctgagacAcggacgatactgtgtatggc	11	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35923158	G	G	35923158	3	3	78	1	0	0	0	0	1	0	0	0	14637	159	6	5	925	5	SLC26A8	6	35923158	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2261671	35923158	135191909	453	83896											
PIM1	5292	broad.mit.edu	37	chr6	37138707	37138707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggcggggggcgcacggGcgtgctttagcccggacgag	21	12	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37138707	T	T	37138707	1	4	78	0	1	0	0	0	0	0	0	0	12022	1218	42	3		3	PIM1	6	37138707	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1215549	37138707	133976360	454	83897											
DNAH8	1769	broad.mit.edu	37	chr6	38810040	38810040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatctataagacattgtaCacgcaatgtatgaaatattt	7	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38810040	A	A	38810040	1	1	78	0	1	0	0	0	0	0	0	0	4647	493	17	3		3	DNAH8	6	38810040	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1671333	38810040	132305027	455	83898											
MOCS1	4337	broad.mit.edu	37	chr6	39883915	39883915	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggggcagtagccgggcCaggttgatgccattggtggt	18	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39883915	A	A	39883915	2	1	78	1	0	0	0	0	0	0	0	1	9784	581	21	2		2	MOCS1	6	39883915	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1073875	39883915	131231152	456	83899											
TREML4	285852	broad.mit.edu	37	chr6	41197840	41197840	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacctctggccatccctcCatcaatggctctgagaccag	10	15	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41197840	A	A	41197840	2	1	78	1	0	0	0	0	0	0	0	1	16598	581	21	2		2	TREML4	6	41197840	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1313925	41197840	129917227	457	83900											
MED20	9477	broad.mit.edu	37	chr6	41888847	41888847	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagttccccaacacaaCcttctgtctcagaagggact	6	15	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41888847	A	A	41888847	1	1	78	0	1	0	0	0	0	0	0	0	9531	522	18	3		3	MED20	6	41888847	5'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	691007	41888847	129226220	458	83901											
UBR2	23304	broad.mit.edu	37	chr6	42650894	42650894	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattgaggtgggagaaaggGtggaatcaggatataagtgc	16	2	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42650894	A	A	42650894	1	1	78	0	1	0	0	0	0	0	0	0	17028	1276	44	4		4	UBR2	6	42650894	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	762047	42650894	128464173	459	83902											
CYP39A1	51302	broad.mit.edu	37	chr6	46555746	46555746	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaattaaaatgaaagaataAtatatactgaaagagataac	6	2	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46555746	T	T	46555746	1	4	78	0	1	0	0	0	0	0	0	0	4210	116	4	5		5	CYP39A1	6	46555746	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3904852	46555746	124559321	460	83903											
TDRD6	221400	broad.mit.edu	37	chr6	46663671	46663671	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agattttagaaacagctgaaGaaggaacaagggtaagtgat	12	3	0	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46663671	T	T	46663671	4	4	78	1	0	0	0	0	0	1	0	0	15856	943	33	3	6166	3	TDRD6	6	46663671	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	107925	46663671	124451396	461	83904											
TFAP2B	7021	broad.mit.edu	37	chr6	50810718	50810718	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcttcggtgacccggcgcCtctgggcttgtgtgagcgtc	15	13	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50810718	T	T	50810718	1	4	78	0	1	0	0	0	0	0	0	0	15911	696	24	4		4	TFAP2B	6	50810718	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4147047	50810718	120304349	462	83905											
PKHD1	5314	broad.mit.edu	37	chr6	51613225	51613225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcatcagaaccacaagGttattagtgacagtataggc	10	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51613225	T	T	51613225	3	4	78	1	0	0	0	0	1	0	0	0	12066	1252	44	3	3114	3	PKHD1	6	51613225	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	802507	51613225	119501842	463	83906											
GSTA2	2939	broad.mit.edu	37	chr6	52622593	52622593	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtaatcatctcatagtttCtgtgggaaaagtatgtgata	9	4	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52622593	T	T	52622593	1	4	78	0	1	0	0	0	0	0	0	0	6897	928	32	4		4	GSTA2	6	52622593	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1009368	52622593	118492474	464	83907											
GSTA4	2941	broad.mit.edu	37	chr6	52847238	52847238	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgggtccttactttcatttCatttgccaaactagaatctt	5	9	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52847238	G	G	52847238	1	3	78	0	1	0	0	0	0	0	0	0	6899	841	29	4		4	GSTA4	6	52847238	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	224645	52847238	118267829	465	83908											
KIAA1586	57691	broad.mit.edu	37	chr6	56915638	56915638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgatgaaaaccctagcGcctattatagtgatgtaagc	10	7	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56915638	T	T	56915638	3	4	78	1	0	0	0	0	1	0	0	0	8315	1087	38	3	182	3	KIAA1586	6	56915638	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4068400	56915638	114199429	466	83909											
EYS	346007	broad.mit.edu	37	chr6	66204803	66204803	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaactgctgtttcactgtCacatttagtcgaagtcccag	8	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66204803	A	A	66204803	2	1	78	1	0	0	0	0	0	0	0	1	5375	813	29	3		3	EYS	6	66204803	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	9289165	66204803	104910264	467	83910											
COL19A1	1310	broad.mit.edu	37	chr6	70850845	70850845	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctaccccttctccttaGggagagccttttacaaaagg	7	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70850845	T	T	70850845	5	4	78	1	0	0	0	0	0	0	1	0	3708	1014	35	2	1520	2	COL19A1	6	70850845	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4646042	70850845	100264222	468	83911											
OGFRL1	79627	broad.mit.edu	37	chr6	72011855	72011855	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caatttcaaattttagccatCtgtttgtgatttctgtcata	5	7	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72011855	T	T	72011855	1	4	78	0	1	0	0	0	0	0	0	0	10939	928	32	4		4	OGFRL1	6	72011855	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1161010	72011855	99103212	469	83912											
COL12A1	1303	broad.mit.edu	37	chr6	75851659	75851659	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaacactggcaaaggtagcAttaagaaacaaaatgaccca	7	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75851659	G	G	75851659	1	3	78	0	1	0	0	0	0	0	0	0	3701	232	8	5		5	COL12A1	6	75851659	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3839804	75851659	95263408	470	83913											
TMEM30A	55754	broad.mit.edu	37	chr6	75968498	75968498	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccaaaaaaggatactgTatgtgacattcaaagagtat	8	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75968498	C	C	75968498	3	2	78	1	0	0	0	0	1	0	0	0	16276	1638	57	5	203	5	TMEM30A	6	75968498	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	116839	75968498	95146569	471	83914											
IBTK	25998	broad.mit.edu	37	chr6	82882068	82882068	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgtagttcttctctaAattaaaccctactaagtatg	6	7	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82882068	T	T	82882068	1	4	78	0	1	0	0	0	0	0	0	0	7546	29	1	5		5	IBTK	6	82882068	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	6913570	82882068	88232999	472	83915											
C6orf165	154313	broad.mit.edu	37	chr6	88151895	88151895	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagagaacaatcaacaaccAcagcaaatcaactaaatgaa	4	10	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88151895	G	G	88151895	1	3	78	0	1	0	0	0	0	0	0	0	2364	174	6	5		5	C6orf165	6	88151895	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5269827	88151895	82963172	473	83916											
ORC3L	23595	broad.mit.edu	37	chr6	88299749	88299749	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttatacgacccgcctccCcgcgccggaaacccgccccg	8	22	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88299749	A	A	88299749	1	1	78	0	1	0	0	0	0	0	0	0	11357	638	22	2		2	ORC3L	6	88299749	5'Flank	SNP	C	TCGA-17-Z049-01A-01W-0746-08	147854	88299749	82815318	474	83917											
GABRR1	2569	broad.mit.edu	37	chr6	89910775	89910775	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcacaactgaggcagaCcgggtcagcggagagcaaag	14	11	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89910775	T	T	89910775	1	4	78	0	1	0	0	0	0	0	0	0	6236	522	18	4		4	GABRR1	6	89910775	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1611026	89910775	81204292	475	83918											
RRAGD	58528	broad.mit.edu	37	chr6	90090184	90090184	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccatgtggctgcaaccccccGaaatacgttgcaaaggttcc	9	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90090184	C	C	90090184	1	2	78	0	1	0	0	0	0	0	0	0	13786	1073	37	4		4	RRAGD	6	90090184	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	179409	90090184	81024883	476	83919											
ANKRD6	22881	broad.mit.edu	37	chr6	90333582	90333582	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggggtgttgtctcttcctCtcttacaggtgtcagcattt	10	10	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90333582	G	G	90333582	1	3	78	0	1	0	0	0	0	0	0	0	685	928	32	4		4	ANKRD6	6	90333582	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	243398	90333582	80781485	477	83920											
KIAA0776	23376	broad.mit.edu	37	chr6	97000627	97000627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaattactgtcagcactcaGgtataaaatacattaacatc	5	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97000627	T	T	97000627	1	4	78	0	1	0	0	0	0	0	0	0	8263	1015	35	2		2	KIAA0776	6	97000627	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6667045	97000627	74114440	478	83921											
FHL5	9457	broad.mit.edu	37	chr6	97053948	97053948	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaacttttgtaagaagGtaattttctaaagagggtga	10	4	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97053948	T	T	97053948	5	4	78	1	0	0	0	0	0	0	1	0	5938	1275	44	3	515	3	FHL5	6	97053948	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	53321	97053948	74061119	479	83922											
KLHL32	114792	broad.mit.edu	37	chr6	97575456	97575456	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgcatctttagcttatatAgagaaaaggaagcatctgaa	8	5	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97575456	T	T	97575456	1	4	78	0	1	0	0	0	0	0	0	0	8457	435	15	5		5	KLHL32	6	97575456	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	521508	97575456	73539611	480	83923											
MCHR2	84539	broad.mit.edu	37	chr6	100382482	100382482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttttgcagtttccgaggCataattctttcatttttcag	8	8	3	0	rs151013471	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100382482	A	A	100382482	1	1	78	0	1	0	0	0	0	0	0	0	9476	725	25	3		3	MCHR2	6	100382482	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2807026	100382482	70732585	481	83924											
ASCC3	10973	broad.mit.edu	37	chr6	101037448	101037448	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaatttcaagacaaacTaggtggcaaaactttaagcc	7	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101037448	A	A	101037448	1	1	78	0	1	0	0	0	0	0	0	0	1037	1537	53	5		5	ASCC3	6	101037448	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	654966	101037448	70077619	482	83925											
MICAL1	64780	broad.mit.edu	37	chr6	109769445	109769445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaggcactgtggaagtGgctgaggtaggcaatgaggc	17	6	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109769445	T	T	109769445	3	4	78	1	0	0	0	0	1	0	0	0	9662	1348	47	2	1439	2	MICAL1	6	109769445	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8731997	109769445	61345622	483	83926											
AMD1	262	broad.mit.edu	37	chr6	111208628	111208629	+	Intron	INS	-	A	A													aaaaatgtggtcttcatgagINSaaaaagtgtgagctttgtaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111208629	A	A	111208628	6	5	78	0	1	1	1	0	0	0	0	0	566	957	33	0		0	AMD1	6	111208628	Intron	INS	-	TCGA-17-Z049-01A-01W-0746-08	1439183	111208628	59906439	484	83927											
HS3ST5	222537	broad.mit.edu	37	chr6	114383749	114383749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggatctctctcttttaaaGgctcagtaaatcaaaatcaa	5	8	5	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114383749	T	T	114383749	1	4	78	0	1	0	0	0	0	0	0	0	7435	1015	35	2		2	HS3ST5	6	114383749	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3175121	114383749	56731318	485	83928											
NT5DC1	221294	broad.mit.edu	37	chr6	116429419	116429419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaacatatcattcccctgGgtggcagaatccctttttag	7	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116429419	T	T	116429419	1	4	78	0	1	0	0	0	0	0	0	0	10785	1247	43	2		2	NT5DC1	6	116429419	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2045670	116429419	54685648	486	83929											
RWDD1	51389	broad.mit.edu	37	chr6	116912127	116912127	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggatggtaagataatagtAgaattccacatgtgggacag	13	4	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116912127	G	G	116912127	1	3	78	0	1	0	0	0	0	0	0	0	13865	435	15	5		5	RWDD1	6	116912127	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	482708	116912127	54202940	487	83930											
KPNA5	3841	broad.mit.edu	37	chr6	117043355	117043355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagatgtgttagcagacGtgtgttgggccctttcttat	11	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117043355	T	T	117043355	3	4	78	1	0	0	0	0	1	0	0	0	8504	1145	40	3	857	3	KPNA5	6	117043355	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	131228	117043355	54071712	488	83931											
RFX6	222546	broad.mit.edu	37	chr6	117246757	117246757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgccatccagtcaacCtggaggcctaggccctgctc	9	18	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117246757	A	A	117246757	3	1	78	1	0	0	0	0	1	0	0	0	13375	681	24	2	1882	2	RFX6	6	117246757	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	203402	117246757	53868310	489	83932											
NKAIN2	154215	broad.mit.edu	37	chr6	124676276	124676276	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagataaacgtacatctaatCctgttccttagagagaagca	8	8	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124676276	T	T	124676276	1	4	78	0	1	0	0	0	0	0	0	0	10531	870	30	4		4	NKAIN2	6	124676276	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7429519	124676276	46438791	490	83933											
LAMA2	3908	broad.mit.edu	37	chr6	129635765	129635765	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttctcccctaactttgccGttataaactctgagggtctc	6	12	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129635765	C	C	129635765	1	2	78	0	1	0	0	0	0	0	0	0	8678	1160	40	4		4	LAMA2	6	129635765	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4959489	129635765	41479302	491	83934											
LAMA2	3908	broad.mit.edu	37	chr6	129774214	129774214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagttacaataatattGttgtcaacgtaaagacagct	8	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129774214	T	T	129774214	3	4	78	1	0	0	0	0	1	0	0	0	8678	1377	48	3	6693	3	LAMA2	6	129774214	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	138449	129774214	41340853	492	83935											
MAP3K5	4217	broad.mit.edu	37	chr6	136926374	136926374	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagctgcttgtggttctccCagttcataaaatgggggttt	11	7	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136926374	A	A	136926374	2	1	78	1	0	0	0	0	0	0	0	1	9345	581	21	2		2	MAP3K5	6	136926374	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7152160	136926374	34188693	493	83936											
KIAA1244	57221	broad.mit.edu	37	chr6	138576798	138576798	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccgagctggtccggctGgtggggtctgtggactccat	17	11	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138576798	T	T	138576798	2	4	78	1	0	0	0	0	0	0	0	1	8287	1335	47	2		2	KIAA1244	6	138576798	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1650424	138576798	32538269	494	83937											
HIVEP2	3097	broad.mit.edu	37	chr6	143092972	143092972	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggacaagttgctttcttgGctggggctgcgggagaggcc	18	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143092972	A	A	143092972	2	1	78	1	0	0	0	0	0	0	0	1	7254	1194	42	4		4	HIVEP2	6	143092972	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4516174	143092972	28022095	495	83938											
UTRN	7402	broad.mit.edu	37	chr6	145157245	145157245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaatacagcagcatttgGgggttcattgatgatgtcta	11	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145157245	T	T	145157245	1	4	78	0	1	0	0	0	0	0	0	0	17230	1247	43	2		2	UTRN	6	145157245	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2064273	145157245	25957822	496	83939											
PLEKHG1	57480	broad.mit.edu	37	chr6	151149537	151149537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggctacagctgctatcCcatgccgaactttcttgtga	9	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151149537	A	A	151149537	1	1	78	0	1	0	0	0	0	0	0	0	12163	638	22	2		2	PLEKHG1	6	151149537	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5992292	151149537	19965530	497	83940											
VIP	7432	broad.mit.edu	37	chr6	153078309	153078309	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagcaaagctgatgacaActtcccagtggtgggtatat	12	7	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153078309	G	G	153078309	1	3	78	0	1	0	0	0	0	0	0	0	17294	58	2	5		5	VIP	6	153078309	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1928772	153078309	18036758	498	83941											
TMEM181	57583	broad.mit.edu	37	chr6	159031754	159031754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctcactgcagagttggGggaagaatcactcaggcact	14	10	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159031754	T	T	159031754	1	4	78	0	1	0	0	0	0	0	0	0	16223	1247	43	2		2	TMEM181	6	159031754	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5953445	159031754	12083313	499	83942											
SLC22A2	6582	broad.mit.edu	37	chr6	160677820	160677820	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgttagaatcctgttggaCataactcagctagggtactc	9	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160677820	T	T	160677820	1	4	78	0	1	0	0	0	0	0	0	0	14564	493	17	4		4	SLC22A2	6	160677820	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1646066	160677820	10437247	500	83943											
PARK2	5071	broad.mit.edu	37	chr6	162989785	162989785	+	Intron	DEL	G	-	-													gagctacatcaacaaccctaGggggcagccggacactctgg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	162989785	-	-	162989785	6	5	78	0	1	1	0	1	0	0	0	0	11543	1015	35	0		0	PARK2	6	162989785	Intron	DEL	G	TCGA-17-Z049-01A-01W-0746-08	2311965	162989785	8125282	501	83944											
FGFR1OP	11116	broad.mit.edu	37	chr6	167438508	167438508	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctatcattttatcactcagAgatatttcctgttaatattt	3	8	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167438508	T	T	167438508	1	4	78	0	1	0	0	0	0	0	0	0	5921	319	11	5		5	FGFR1OP	6	167438508	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	4448723	167438508	3676559	502	83945											
UNC93A	54346	broad.mit.edu	37	chr6	167728843	167728843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaccatggtggcgtatgGgcttgtggagtgcgtggagt	18	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167728843	T	T	167728843	3	4	78	1	0	0	0	0	1	0	0	0	17122	1232	43	2	1307	2	UNC93A	6	167728843	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	290335	167728843	3386224	503	83946											
MLLT4	4301	broad.mit.edu	37	chr6	168370608	168370608	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggagaatgaactgaacaCaaagtgaaagaaaatgagga	11	4	0	6			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168370608	T	T	168370608	3	4	78	1	0	0	0	0	1	0	0	0	9722	478	17	4	5725	4	MLLT4	6	168370608	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	641765	168370608	2744459	504	83947											
SMOC2	64094	broad.mit.edu	37	chr6	169051476	169051476	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaggcaggtacgctgtgttCgccgtgggacaacaagttgg	15	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169051476	A	A	169051476	1	1	78	0	1	0	0	0	0	0	0	0	14916	899	31	3		3	SMOC2	6	169051476	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	680868	169051476	2063591	505	83948											
FAM120B	84498	broad.mit.edu	37	chr6	170626835	170626835	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaggatttttcattacatCaagtcacacaaggagcagcc	7	11	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170626835	G	G	170626835	3	3	78	1	0	0	0	0	1	0	0	0	5463	816	29	4	359	4	FAM120B	6	170626835	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1575359	170626835	488232	506	83949											
NUDT1	4521	broad.mit.edu	37	chr7	2290722	2290722	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggggcattgagtggcgcaGagccgggtttcatctggaat	17	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2290722	A	A	2290722	1	1	78	0	1	0	0	0	0	0	0	0	10820	957	33	4		4	NUDT1	7	2290722	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08		2290722	156847941	507	83950											
AMZ1	155185	broad.mit.edu	37	chr7	2740076	2740076	+	5'UTR	DEL	C	-	-													ccaggagtggccaggccctgCccgcccaccatgctgcagtg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2740076	-	-	2740076	6	5	78	0	1	1	0	1	0	0	0	0	596	754	26	0		0	AMZ1	7	2740076	5'UTR	DEL	C	TCGA-17-Z049-01A-01W-0746-08	449354	2740076	156398587	508	83951											
WIPI2	26100	broad.mit.edu	37	chr7	5269190	5269190	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagtgtgtactgcccgcaGggctgccctgtgtggagacg	16	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5269190	A	A	5269190	1	1	78	0	1	0	0	0	0	0	0	0	17498	1015	35	4		4	WIPI2	7	5269190	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2529114	5269190	153869473	509	83952											
SLC29A4	222962	broad.mit.edu	37	chr7	5330276	5330276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagtggctatggtgatgGcggccggggtggtggacatc	20	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5330276	T	T	5330276	1	4	78	0	1	0	0	0	0	0	0	0	14651	1218	42	3		3	SLC29A4	7	5330276	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	61086	5330276	153808387	510	83953											
EIF2AK1	27102	broad.mit.edu	37	chr7	6068579	6068579	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgttggtccagtctgtgtTcttctgtaggatgtctgtgc	12	8	5	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6068579	C	C	6068579	3	2	78	1	0	0	0	0	1	0	0	0	5036	1783	62	5	491	5	EIF2AK1	7	6068579	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	738303	6068579	153070084	511	83954											
THSD7A	221981	broad.mit.edu	37	chr7	11441642	11441642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccatatccacagagaaaaGccagcccgataatcatttta	5	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11441642	T	T	11441642	1	4	78	0	1	0	0	0	0	0	0	0	16002	986	34	3		3	THSD7A	7	11441642	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5373063	11441642	147697021	512	83955											
THSD7A	221981	broad.mit.edu	37	chr7	11676677	11676677	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagacctttcaagacctaGtacattaacttccctgcggt	7	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11676677	A	A	11676677	1	1	78	0	1	0	0	0	0	0	0	0	16002	1044	36	4		4	THSD7A	7	11676677	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	235035	11676677	147461986	513	83956											
HDAC9	9734	broad.mit.edu	37	chr7	18802027	18802027	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttttccaacagctttgctCtgtggagtgagtcatttgca	10	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18802027	A	A	18802027	1	1	78	0	1	0	0	0	0	0	0	0	7081	928	32	3		3	HDAC9	7	18802027	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7125350	18802027	140336636	514	83957											
DNAH11	8701	broad.mit.edu	37	chr7	21628809	21628809	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacgtataaaccagtagaaAaaccttattcctacagattt	4	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21628809	G	G	21628809	1	3	78	0	1	0	0	0	0	0	0	0	4639	29	1	5		5	DNAH11	7	21628809	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2826782	21628809	137509854	515	83958											
HOXA5	3202	broad.mit.edu	37	chr7	27183196	27183196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggccatttggatagcgacCgcaaaatgagtttacaaaat	10	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27183196	A	A	27183196	3	1	78	1	0	0	0	0	1	0	0	0	7362	652	23	1	789	1	HOXA5	7	27183196	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5554387	27183196	131955467	516	83959											
CHN2	1124	broad.mit.edu	37	chr7	29519962	29519962	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaattatgagaagacacAcaactttaaggtaagcaagc	7	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29519962	G	G	29519962	3	3	78	1	0	0	0	0	1	0	0	0	3394	159	6	5	838	5	CHN2	7	29519962	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2336766	29519962	129618701	517	83960											
FAM188B	84182	broad.mit.edu	37	chr7	30880256	30880256	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgccacatcagaggcccttCtgttgcagaaggcagggccc	12	13	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30880256	G	G	30880256	1	3	78	0	1	0	0	0	0	0	0	0	5561	928	32	4		4	FAM188B	7	30880256	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1360294	30880256	128258407	518	83961											
FAM188B	84182	broad.mit.edu	37	chr7	30921744	30921744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcagacagaaaaatgcccGgacccctttccctggggacg	11	13	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30921744	T	T	30921744	1	4	78	0	1	0	0	0	0	0	0	0	5561	1131	39	1		1	FAM188B	7	30921744	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	41488	30921744	128216919	519	83962											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31126496	31126496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcggagccccaggtctacGgtggacattggacatgttgg	14	10	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31126496	T	T	31126496	1	4	78	0	1	0	0	0	0	0	0	0	303	1131	39	1		1	ADCYAP1R1	7	31126496	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	204752	31126496	128012167	520	83963											
ELMO1	9844	broad.mit.edu	37	chr7	37296119	37296119	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagggaggatggagggagGagaaggaggaaggaaggaag	25	0	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37296119	T	T	37296119	1	4	78	0	1	0	0	0	0	0	0	0	5107	1189	41	3		3	ELMO1	7	37296119	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6169623	37296119	121842544	521	83964											
GLI3	2737	broad.mit.edu	37	chr7	42004046	42004046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaatgggagggacgccCgaggcgtggtgaggcgggag	23	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42004046	A	A	42004046	3	1	78	1	0	0	0	0	1	0	0	0	6503	652	23	1	121	1	GLI3	7	42004046	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4707927	42004046	117134617	522	83965											
HECW1	23072	broad.mit.edu	37	chr7	43506294	43506294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaaacaaagaaaacaGctcagtccactcttttgact	5	9	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43506294	T	T	43506294	1	4	78	0	1	0	0	0	0	0	0	0	7109	986	34	3		3	HECW1	7	43506294	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1502248	43506294	115632369	523	83966											
TNS3	64759	broad.mit.edu	37	chr7	47440037	47440037	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agactaattcaaccttcccaTagtcaggaaaacggtcatct	6	11	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47440037	A	A	47440037	3	1	78	1	0	0	0	0	1	0	0	0	16467	1406	49	5	3533	5	TNS3	7	47440037	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3933743	47440037	111698626	524	83967											
SUN3	256979	broad.mit.edu	37	chr7	48046777	48046777	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacctctgtgtggtccggGtcctccacagggtctccatg	13	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48046777	A	A	48046777	2	1	78	1	0	0	0	0	0	0	0	1	15511	1252	44	4		4	SUN3	7	48046777	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	606740	48046777	111091886	525	83968											
POM121L12	285877	broad.mit.edu	37	chr7	53103588	53103588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcgcccggtgcccagcaCccacctcatcgaggtgcggc	15	17	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103588	A	A	53103588	3	1	78	1	0	0	0	0	1	0	0	0	12336	507	18	3	226	3	POM121L12	7	53103588	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5056811	53103588	106035075	526	83969											
EGFR	1956	broad.mit.edu	37	chr7	55242592	55242592	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgtctggcagctgctcTgctctagaccctgctcatct	8	15	6	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55242592	G	G	55242592	1	3	78	0	1	0	0	0	0	0	0	0	5007	1595	55	5		5	EGFR	7	55242592	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2139004	55242592	103896071	527	83970											
LANCL2	55915	broad.mit.edu	37	chr7	55479453	55479453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaacaagttttgcctaaGtcttaaataaccagatagtt	6	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55479453	T	T	55479453	1	4	78	0	1	0	0	0	0	0	0	0	8693	1044	36	3		3	LANCL2	7	55479453	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	236861	55479453	103659210	528	83971											
VPS37D	155382	broad.mit.edu	37	chr7	73085416	73085416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttccagcgtggccgcGccctggcccacctgaggcgg	14	18	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73085416	T	T	73085416	3	4	78	1	0	0	0	0	1	0	0	0	17335	1087	38	3	480	3	VPS37D	7	73085416	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	17605963	73085416	86053247	529	83972											
CLIP2	7461	broad.mit.edu	37	chr7	73768238	73768239	+	Missense_Mutation	DNP	GG	AT	AT													gacgaagactggcgtggtgcGgtacgtgggggagacagact					rs150032298		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	73768239	AT	AT	73768238	3	1	78	1	0	0	0	0	1	0	0	0	3565	1116	39	4	717	4	CLIP2	7	73768238	Missense_Mutation	DNP	GG	TCGA-17-Z049-01A-01W-0746-08	682822	73768238	85370425	530	83973											
HIP1	3092	broad.mit.edu	37	chr7	75203330	75203330	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgcgtgctttacctcatCtaattcatttaaccttcaca	4	12	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75203330	A	A	75203330	1	1	78	0	1	0	0	0	0	0	0	0	7181	928	32	3		3	HIP1	7	75203330	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1435092	75203330	83935333	531	83974											
SRCRB4D	136853	broad.mit.edu	37	chr7	76024651	76024651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttgggggacccaggcctaGggcaggagagaagggggcag	21	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76024651	T	T	76024651	1	4	78	0	1	0	0	0	0	0	0	0	15255	1015	35	2		2	SRCRB4D	7	76024651	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	821321	76024651	83114012	532	83975											
FGL2	10875	broad.mit.edu	37	chr7	76828895	76828895	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacacctcctcgatcctgctGaattgcttcgggagctgaat	9	12	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76828895	A	A	76828895	2	1	78	1	0	0	0	0	0	0	0	1	5930	1281	45	4		4	FGL2	7	76828895	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	804244	76828895	82309768	533	83976											
PION	54103	broad.mit.edu	37	chr7	76984659	76984659	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggctgagcagtgctctataGagctttccagaacaacaatc	9	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76984659	C	C	76984659	2	2	78	1	0	0	0	0	0	0	0	1	12029	929	33	4		4	PION	7	76984659	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	155764	76984659	82154004	534	83977											
HGF	3082	broad.mit.edu	37	chr7	81392156	81392157	+	Frame_Shift_Ins	INS	-	A	A													tttgctgattttttgaattcINSatgaattgtatttcttcttt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81392157	A	A	81392156	7	5	78	1	0	1	1	0	0	0	0	0	7152	835	29	0	2153	0	HGF	7	81392156	Frame_Shift_Ins	INS	-	TCGA-17-Z049-01A-01W-0746-08	4407497	81392156	77746507	535	83978											
CACNA2D1	781	broad.mit.edu	37	chr7	81603792	81603792	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgggttgtttggagtttTtctatcaataaactcgttga	10	4	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81603792	C	C	81603792	3	2	78	1	0	0	0	0	1	0	0	0	2574	1850	64	5	1303	5	CACNA2D1	7	81603792	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	211636	81603792	77534871	536	83979											
ABCB1	5243	broad.mit.edu	37	chr7	87150776	87150776	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctctctttcccctgccgtCatgtctaagtcagagtctcc	7	15	6	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87150776	T	T	87150776	1	4	78	0	1	0	0	0	0	0	0	0	40	841	29	4		4	ABCB1	7	87150776	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5546984	87150776	71987887	537	83980											
AKAP9	10142	broad.mit.edu	37	chr7	91570531	91570531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggggtgggagggggcctgGgaagcggagttcgccgcagc	22	9	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91570531	T	T	91570531	1	4	78	0	1	0	0	0	0	0	0	0	459	1247	43	2		2	AKAP9	7	91570531	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4419755	91570531	67568132	538	83981											
SAMD9L	219285	broad.mit.edu	37	chr7	92762932	92762932	+	Frame_Shift_Del	DEL	C	-	-													gctctttgccctataggtgaCcagattgatcacttgctctg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92762932	-	-	92762932	7	5	78	1	0	1	0	1	0	0	0	0	13938	507	18	0	2405	0	SAMD9L	7	92762932	Frame_Shift_Del	DEL	C	TCGA-17-Z049-01A-01W-0746-08	1192401	92762932	66375731	539	83982											
COL1A2	1278	broad.mit.edu	37	chr7	94034569	94034569	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttgttggaccacaggtgaGactttttacattggtagata	11	5	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94034569	T	T	94034569	1	4	78	0	1	0	0	0	0	0	0	0	3710	957	33	3		3	COL1A2	7	94034569	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1271637	94034569	65104094	540	83983											
DYNC1I1	1780	broad.mit.edu	37	chr7	95661840	95661840	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcaggttcaaatcaaaagCggcaaatgacctgacgcttg	9	9	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95661840	T	T	95661840	1	4	78	0	1	0	0	0	0	0	0	0	4882	783	27	4		4	DYNC1I1	7	95661840	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1627271	95661840	63476823	541	83984											
DYNC1I1	1780	broad.mit.edu	37	chr7	95662047	95662047	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcactgtctccactgaTggcaaaatgtgttcctggag	9	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95662047	C	C	95662047	2	2	78	1	0	0	0	0	0	0	0	1	4882	1461	51	5		5	DYNC1I1	7	95662047	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	207	95662047	63476616	542	83985											
TRRAP	8295	broad.mit.edu	37	chr7	98557026	98557026	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgctctctcgccggtgtgtGaaccttctgaagactgcgtt	12	11	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98557026	T	T	98557026	2	4	78	1	0	0	0	0	0	0	0	1	16726	1277	45	3		3	TRRAP	7	98557026	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2894979	98557026	60581637	543	83986											
TAF6	6878	broad.mit.edu	37	chr7	99706238	99706238	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagggagggctggtgacacTcttgagaagaaccttgggga	17	6	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99706238	A	A	99706238	1	1	78	0	1	0	0	0	0	0	0	0	15649	1566	54	5		5	TAF6	7	99706238	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1149212	99706238	59432425	544	83987											
SPDYE3	441272	broad.mit.edu	37	chr7	99913244	99913244	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtctcagagcaggagcctCtctcccttgcccagtgaaag	11	13	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99913244	G	G	99913244	1	3	78	0	1	0	0	0	0	0	0	0	15148	928	32	4		4	SPDYE3	7	99913244	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	207006	99913244	59225419	545	83988											
PILRA	29992	broad.mit.edu	37	chr7	99997700	99997700	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaatatatattaacaaTaaagtaacaaatttaaaaag	2	2	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99997700	C	C	99997700	1	2	78	0	1	0	0	0	0	0	0	0	12020	1421	49	5		5	PILRA	7	99997700	3'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	84456	99997700	59140963	546	83989											
TSC22D4	81628	broad.mit.edu	37	chr7	100065313	100065313	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcccgcccacaccccccTgtacctgtgacagtagagaa	8	18	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100065313	C	C	100065313	1	2	78	0	1	0	0	0	0	0	0	0	16735	1595	55	5		5	TSC22D4	7	100065313	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	67613	100065313	59073350	547	83990											
MUC17	140453	broad.mit.edu	37	chr7	100676862	100676862	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcacacctgtgaccacttCaactgaagccagttcctctc	6	16	2	2	rs71530303		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100676862	A	A	100676862	4	1	78	1	0	0	0	0	0	1	0	0	10068	838	29	3	2175	3	MUC17	7	100676862	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	611549	100676862	58461801	548	83991											
MUC17	140453	broad.mit.edu	37	chr7	100696652	100696652	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtctcagttatacaagtGgcaagaagaggacagtggac	12	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100696652	A	A	100696652	4	1	78	1	0	0	0	0	0	1	0	0	10068	1357	47	4	13340	4	MUC17	7	100696652	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	19790	100696652	58442011	549	83992											
EMID2	136227	broad.mit.edu	37	chr7	101196563	101196563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagagggtggagaggtgcCcccacctcccgttccagtgt	15	12	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101196563	A	A	101196563	1	1	78	0	1	0	0	0	0	0	0	0	5134	638	22	2		2	EMID2	7	101196563	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	499911	101196563	57942100	550	83993											
RELN	5649	broad.mit.edu	37	chr7	103276694	103276694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactcacctggattgtgagCtgtcaaggaaagatgtaatt	10	7	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103276694	A	A	103276694	3	1	78	1	0	0	0	0	1	0	0	0	13328	797	28	3	8283	3	RELN	7	103276694	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2080131	103276694	55861969	551	83994											
RELN	5649	broad.mit.edu	37	chr7	103294653	103294653	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagggtcacaaattcctcCtgcacaaaacaaaaatttta	4	11	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103294653	G	G	103294653	5	3	78	1	0	0	0	0	0	0	1	0	13328	695	24	4	9153	4	RELN	7	103294653	Splice_Site	SNP	C	TCGA-17-Z049-01A-01W-0746-08	17959	103294653	55844010	552	83995											
LHFPL3	375612	broad.mit.edu	37	chr7	104310075	104310075	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctccaccctggaacattcGagagcaaatcaaaacctcta	5	14	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104310075	T	T	104310075	1	4	78	0	1	0	0	0	0	0	0	0	8838	1073	37	3		3	LHFPL3	7	104310075	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1015422	104310075	54828588	553	83996											
CDHR3	222256	broad.mit.edu	37	chr7	105656440	105656441	+	Missense_Mutation	DNP	CT	TA	TA													ctcatttttgataggccatcCtatgtatttgatgtgtcaga							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	105656441	TA	TA	105656440	3	4	78	1	0	0	0	0	1	0	0	0	3150	668	24	4	1437	4	CDHR3	7	105656440	Missense_Mutation	DNP	CT	TCGA-17-Z049-01A-01W-0746-08	1346365	105656440	53482223	554	83997											
IFRD1	3475	broad.mit.edu	37	chr7	112096994	112096994	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacaaggcaagcagctcttGaaggtattaaaaatgcactg	10	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112096994	A	A	112096994	3	1	78	1	0	0	0	0	1	0	0	0	7623	1291	45	4	324	4	IFRD1	7	112096994	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6440554	112096994	47041669	555	83998											
FOXP2	93986	broad.mit.edu	37	chr7	114269751	114269751	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attttttgttgtttttatggGatgaatcttaatggatactc	8	3	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114269751	T	T	114269751	1	4	78	0	1	0	0	0	0	0	0	0	6087	1189	41	3		3	FOXP2	7	114269751	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2172757	114269751	44868912	556	83999											
ST7	7982	broad.mit.edu	37	chr7	116830916	116830916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggctgcatctcggcggGggctgagcacagcagagatg	17	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116830916	T	T	116830916	3	4	78	1	0	0	0	0	1	0	0	0	15347	1232	43	2	1226	2	ST7	7	116830916	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2561165	116830916	42307747	557	84000											
ANKRD7	56311	broad.mit.edu	37	chr7	117864726	117864726	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagccataacggccgtaacTgccataacggccggctgcgc	11	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117864726	A	A	117864726	1	1	78	0	1	0	0	0	0	0	0	0	686	1595	55	5		5	ANKRD7	7	117864726	5'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1033810	117864726	41273937	558	84001											
ANKRD7	56311	broad.mit.edu	37	chr7	117877093	117877093	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagtaggggtaaccacatAcaaatctgtgcagggattct	10	8	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117877093	G	G	117877093	1	3	78	0	1	0	0	0	0	0	0	0	686	406	14	5		5	ANKRD7	7	117877093	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	12367	117877093	41261570	559	84002											
TSPAN12	23554	broad.mit.edu	37	chr7	120446688	120446688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcaggaatctgggggcCagtccatctctgtcatttcc	10	13	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120446688	A	A	120446688	3	1	78	1	0	0	0	0	1	0	0	0	16761	595	21	2	398	2	TSPAN12	7	120446688	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2569595	120446688	38691975	560	84003											
ASB15	142685	broad.mit.edu	37	chr7	123277110	123277110	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatttcttgtaaccattttAcatccttaattgtaaagtgt	4	6	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123277110	T	T	123277110	1	4	78	0	1	0	0	0	0	0	0	0	1023	406	14	5		5	ASB15	7	123277110	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2830422	123277110	35861553	561	84004											
GRM8	2918	broad.mit.edu	37	chr7	126173024	126173024	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accttttctgctgactgggcTgtaccaaaaaagatggggat	11	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126173024	A	A	126173024	2	1	78	1	0	0	0	0	0	0	0	1	6869	1567	55	5		5	GRM8	7	126173024	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2895914	126173024	32965639	562	84005											
FSCN3	29999	broad.mit.edu	37	chr7	127236213	127236213	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcgagaaggacagaaaagCatgggtatgggatttagggg	16	4	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127236213	T	T	127236213	1	4	78	0	1	0	0	0	0	0	0	0	6129	725	25	4		4	FSCN3	7	127236213	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1063189	127236213	31902450	563	84006											
OPN1SW	611	broad.mit.edu	37	chr7	128414501	128414501	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttcagagcactcttccttCtcatgtggagccccgaaccc	8	15	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128414501	G	G	128414501	1	3	78	0	1	0	0	0	0	0	0	0	10974	928	32	4		4	OPN1SW	7	128414501	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1178288	128414501	30724162	564	84007											
AHCYL2	23382	broad.mit.edu	37	chr7	129064950	129064950	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcctgagggtcgctataAgcaggatgtctacctgttgc	12	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129064950	T	T	129064950	3	4	78	1	0	0	0	0	1	0	0	0	411	72	3	5	1856	5	AHCYL2	7	129064950	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	650449	129064950	30073713	565	84008											
CHCHD3	54927	broad.mit.edu	37	chr7	132470256	132470256	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaaacgtgaaatgattcTgctgaatccattcttgatgt	7	7	3	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132470256	C	C	132470256	1	2	78	0	1	0	0	0	0	0	0	0	3348	1595	55	5		5	CHCHD3	7	132470256	3'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3405306	132470256	26668407	566	84009											
CREB3L2	64764	broad.mit.edu	37	chr7	137597844	137597844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaggaagaatttcaaaCacaatttttaaaaaccaatc	5	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137597844	A	A	137597844	1	1	78	0	1	0	0	0	0	0	0	0	3889	493	17	3		3	CREB3L2	7	137597844	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5127588	137597844	21540819	567	84010											
AKR1D1	6718	broad.mit.edu	37	chr7	137776405	137776405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaacatagtgagaccccCcatctcaaaaaaaaaaaatg	7	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137776405	A	A	137776405	1	1	78	0	1	0	0	0	0	0	0	0	473	638	22	2		2	AKR1D1	7	137776405	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	178561	137776405	21362258	568	84011											
KIAA1549	57670	broad.mit.edu	37	chr7	138566078	138566078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatcagaaactcacagcCtgataacagaagcatgctct	7	11	3	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138566078	A	A	138566078	1	1	78	0	1	0	0	0	0	0	0	0	8314	696	24	2		2	KIAA1549	7	138566078	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	789673	138566078	20572585	569	84012											
MGAM	8972	broad.mit.edu	37	chr7	141754458	141754458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagaagatagaaacatagCatctgaactttgtgtccaaa	7	6	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141754458	A	A	141754458	1	1	78	0	1	0	0	0	0	0	0	0	9634	725	25	3		3	MGAM	7	141754458	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3188380	141754458	17384205	570	84013											
TRPV5	56302	broad.mit.edu	37	chr7	142622574	142622575	+	Intron	DNP	CC	AT	AT													gcatggcttcgtttccagcaCcatcaccccttgatgcaatt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	142622575	AT	AT	142622574	1	1	78	0	1	0	0	0	0	0	0	0	16724	522	18	3		3	TRPV5	7	142622574	Intron	DNP	CC	TCGA-17-Z049-01A-01W-0746-08	868116	142622574	16516089	571	84014											
TRPV5	56302	broad.mit.edu	37	chr7	142625165	142625165	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcacatgacaggcctgatCctccttggcatccatacctc	6	17	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142625165	T	T	142625165	1	4	78	0	1	0	0	0	0	0	0	0	16724	870	30	4		4	TRPV5	7	142625165	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2591	142625165	16513498	572	84015											
TRPV5	56302	broad.mit.edu	37	chr7	142626705	142626705	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtctccctctgtccccagTtctctcagggacacagcatc	9	16	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142626705	G	G	142626705	1	3	78	0	1	0	0	0	0	0	0	0	16724	1740	60	5		5	TRPV5	7	142626705	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1540	142626705	16511958	573	84016											
TAS2R41	259287	broad.mit.edu	37	chr7	143175182	143175182	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttctactactctgcccagAaggtcgagtactctgggggt	11	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143175182	G	G	143175182	3	3	78	1	0	0	0	0	1	0	0	0	15698	247	9	5	219	5	TAS2R41	7	143175182	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	548477	143175182	15963481	574	84017											
ZNF425	155054	broad.mit.edu	37	chr7	148801676	148801676	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctgcagcccgtgggctttCaggcttctcttgaggcggaa	14	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148801676	T	T	148801676	2	4	78	1	0	0	0	0	0	0	0	1	18026	813	29	4		4	ZNF425	7	148801676	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5626494	148801676	10336987	575	84018											
GIMAP8	155038	broad.mit.edu	37	chr7	150174341	150174341	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacggacaggaggtggtgGttgtggacactccttccttc	16	9	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150174341	A	A	150174341	3	1	78	1	0	0	0	0	1	0	0	0	6449	1261	44	4	1485	4	GIMAP8	7	150174341	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1372665	150174341	8964322	576	84019											
MLL3	58508	broad.mit.edu	37	chr7	151970971	151970971	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaaggggtaaaggagAgaaatctctttataaaacct	10	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151970971	G	G	151970971	1	3	78	0	1	0	0	0	0	0	0	0	9715	319	11	5		5	MLL3	7	151970971	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1796630	151970971	7167692	577	84020											
VIPR2	7434	broad.mit.edu	37	chr7	158851291	158851291	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaaagaaagaaaacagatCtgtaagctgagggtgaccag	11	6	1	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158851291	T	T	158851291	1	4	78	0	1	0	0	0	0	0	0	0	17297	928	32	4		4	VIPR2	7	158851291	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6880320	158851291	287372	578	84021											
MYOM2	9172	broad.mit.edu	37	chr8	2000375	2000375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaggaaccatctgcagGgtctgtgcgaagcgagtgag	17	8	2	1	rs138096233	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2000375	T	T	2000375	3	4	78	1	0	0	0	0	1	0	0	0	10186	1223	43	2	213	2	MYOM2	8	2000375	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08		2000375	144363647	579	84022											
CSMD1	64478	broad.mit.edu	37	chr8	3205673	3205673	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatttcctttgacacttgcTccacattcggctacaataaa	4	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3205673	A	A	3205673	2	1	78	1	0	0	0	0	0	0	0	1	3978	1538	54	5		5	CSMD1	8	3205673	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1205298	3205673	143158349	580	84023											
CSMD1	64478	broad.mit.edu	37	chr8	3432588	3432588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggatccacatgttctcGctggaaacacatagaaacga	9	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3432588	T	T	3432588	3	4	78	1	0	0	0	0	1	0	0	0	3978	1101	38	3	9528	3	CSMD1	8	3432588	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	226915	3432588	142931434	581	84024											
CSMD1	64478	broad.mit.edu	37	chr8	4645079	4645079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccttcaccagaaaatgtgGggagacagctttcattgcac	10	10	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4645079	T	T	4645079	1	4	78	0	1	0	0	0	0	0	0	0	3978	1247	43	2		2	CSMD1	8	4645079	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1212491	4645079	141718943	582	84025											
TNKS	8658	broad.mit.edu	37	chr8	9538452	9538452	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaatgaaatgctactatatCtgttattggcagttgtgaca	8	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9538452	G	G	9538452	1	3	78	0	1	0	0	0	0	0	0	0	16442	928	32	4		4	TNKS	8	9538452	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4893373	9538452	136825570	583	84026											
BLK	640	broad.mit.edu	37	chr8	11400849	11400849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggacgccccgccactgcCgcccctggtgagtgattgcc	12	17	0	2	rs142352008	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11400849	A	A	11400849	3	1	78	1	0	0	0	0	1	0	0	0	1450	652	23	1	118	1	BLK	8	11400849	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1862397	11400849	134963173	584	84027											
MSR1	4481	broad.mit.edu	37	chr8	16001085	16001085	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttaatgtgtttccactccCcttttcccctttctggcctt	4	15	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16001085	T	T	16001085	3	4	78	1	0	0	0	0	1	0	0	0	9980	623	22	4	400	4	MSR1	8	16001085	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4600236	16001085	130362937	585	84028											
PSD3	23362	broad.mit.edu	37	chr8	18432723	18432723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtccgtggccttggatgCcaatgcgtggtgcacactca	12	11	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18432723	A	A	18432723	3	1	78	1	0	0	0	0	1	0	0	0	12754	739	26	3	605	3	PSD3	8	18432723	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2431638	18432723	127931299	586	84029											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19524523	19524523	+	Intron	SNP	A	G	G													aaagaaagaaagaaagaaagAaagaaaggaaggaaggaagg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19524523	G	G	19524523	1	3	78	0	1	0	0	0	0	0	0	0	3972	261	9	5		5	CSGALNACT1	8	19524523	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1091800	19524523	126839499	587	84030	382	2									
CSGALNACT1	55790	broad.mit.edu	37	chr8	19524527	19524527	+	Intron	SNP	A	G	G													aaagaaagaaagaaagaaagAaaggaaggaaggaaggaagg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19524527	G	G	19524527	1	3	78	0	1	0	0	0	0	0	0	0	3972	261	9	5		5	CSGALNACT1	8	19524527	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	4	19524527	126839495	588	84031	382	2									
ADAMDEC1	27299	broad.mit.edu	37	chr8	24255186	24255187	+	Intron	INS	-	T	T													ttaacaatgttcttttattcINStttgtaaagaaagaagactt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24255187	T	T	24255186	6	5	78	0	1	1	1	0	0	0	0	0	254	928	32	0		0	ADAMDEC1	8	24255186	Intron	INS	-	TCGA-17-Z049-01A-01W-0746-08	4730659	24255186	122108836	589	84032											
EBF2	64641	broad.mit.edu	37	chr8	25766105	25766105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatgtgttacatttttcaGtaaacatttttaaagggaga	9	4	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25766105	T	T	25766105	1	4	78	0	1	0	0	0	0	0	0	0	4921	1044	36	3		3	EBF2	8	25766105	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1510919	25766105	120597917	590	84033											
STMN4	81551	broad.mit.edu	37	chr8	27098873	27098873	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacgggagtgggagaactgGggccccaagcaagctggaga	17	9	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27098873	A	A	27098873	1	1	78	0	1	0	0	0	0	0	0	0	15429	1247	43	4		4	STMN4	8	27098873	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1332768	27098873	119265149	591	84034											
STMN4	81551	broad.mit.edu	37	chr8	27099860	27099860	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggggtgcaggacctatgagGacaggacacagggccccccc	15	14	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27099860	T	T	27099860	1	4	78	0	1	0	0	0	0	0	0	0	15429	1189	41	3		3	STMN4	8	27099860	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	987	27099860	119264162	592	84035											
SCARA5	286133	broad.mit.edu	37	chr8	27823991	27823991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtagagccccaggacagCatgcttcagggccgacaggg	15	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27823991	A	A	27823991	3	1	78	1	0	0	0	0	1	0	0	0	13992	710	25	3	1334	3	SCARA5	8	27823991	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	724131	27823991	118540031	593	84036											
C8orf80	389643	broad.mit.edu	37	chr8	27905020	27905020	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagatttaaaaaacataaaTtacccgtttcctcctcggtg	7	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27905020	A	A	27905020	1	1	78	0	1	0	0	0	0	0	0	0	2465	1508	52	5		5	C8orf80	8	27905020	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	81029	27905020	118459002	594	84037											
KCNU1	157855	broad.mit.edu	37	chr8	36662628	36662628	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgaataaagaaaaatttTcctattctttccctttagtt	5	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36662628	A	A	36662628	1	1	78	0	1	0	0	0	0	0	0	0	8163	1798	62	5		5	KCNU1	8	36662628	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	8757608	36662628	109701394	595	84038											
HTRA4	203100	broad.mit.edu	37	chr8	38832536	38832536	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcgtactcttgagccaGtattttttcatagggaccag	11	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38832536	C	C	38832536	1	2	78	0	1	0	0	0	0	0	0	0	7526	1044	36	4		4	HTRA4	8	38832536	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2169908	38832536	107531486	596	84039											
ADAM9	8754	broad.mit.edu	37	chr8	38884015	38884015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccatgtccatcacgtgtGtgattcatgttactttctta	7	9	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38884015	T	T	38884015	1	4	78	0	1	0	0	0	0	0	0	0	253	1392	48	3		3	ADAM9	8	38884015	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	51479	38884015	107480007	597	84040											
ST18	9705	broad.mit.edu	37	chr8	53045518	53045518	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttaatagggtacaccttcCctgaaactcaatccgtgttc	6	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53045518	G	G	53045518	1	3	78	0	1	0	0	0	0	0	0	0	15330	638	22	4		4	ST18	8	53045518	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	14161503	53045518	93318504	598	84041											
SDR16C5	195814	broad.mit.edu	37	chr8	57218037	57218037	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggactaacaggacttaaTagaattaaattaatgaattt	6	3	0	2	rs142036934	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57218037	C	C	57218037	1	2	78	0	1	0	0	0	0	0	0	0	14084	1421	49	5		5	SDR16C5	8	57218037	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	4172519	57218037	89145985	599	84042											
NSMAF	8439	broad.mit.edu	37	chr8	59522138	59522138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttaaacatgggcagctccCcacctgaccctgtggtctac	9	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59522138	A	A	59522138	1	1	78	0	1	0	0	0	0	0	0	0	10769	638	22	2		2	NSMAF	8	59522138	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2304101	59522138	86841884	600	84043											
CYP7B1	9420	broad.mit.edu	37	chr8	65528624	65528624	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacttgttttagattctgCatcatgctttccaagagtat	6	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65528624	G	G	65528624	3	3	78	1	0	0	0	0	1	0	0	0	4230	710	25	4	1062	4	CYP7B1	8	65528624	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6006486	65528624	80835398	601	84044											
CSPP1	79848	broad.mit.edu	37	chr8	67976572	67976572	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggggccgtacccggcgGttggcgaagggcgagcggag	23	10	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67976572	T	T	67976572	1	4	78	0	1	0	0	0	0	0	0	0	3996	1276	44	3		3	CSPP1	8	67976572	5'Flank	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2447948	67976572	78387450	602	84045											
SULF1	23213	broad.mit.edu	37	chr8	70515666	70515666	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatatgccttgcccacaaGgatcaccccaagctgagcat	8	13	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70515666	A	A	70515666	1	1	78	0	1	0	0	0	0	0	0	0	15488	1015	35	4		4	SULF1	8	70515666	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2539094	70515666	75848356	603	84046											
SULF1	23213	broad.mit.edu	37	chr8	70533314	70533314	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggcaagcttcgaattcaCaagtgtaaaggacccagtga	10	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70533314	G	G	70533314	3	3	78	1	0	0	0	0	1	0	0	0	15488	477	17	4	1460	4	SULF1	8	70533314	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	17648	70533314	75830708	604	84047											
TRPA1	8989	broad.mit.edu	37	chr8	72945894	72945894	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttacaagtaaattcatgagGacaattgggacaaatattgt	8	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72945894	T	T	72945894	2	4	78	1	0	0	0	0	0	0	0	1	16702	1161	41	3		3	TRPA1	8	72945894	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2412580	72945894	73418128	605	84048											
SLC26A7	115111	broad.mit.edu	37	chr8	92379031	92379031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcaagtaaataataataCatcacacgagtatttcgaga	6	6	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92379031	A	A	92379031	1	1	78	0	1	0	0	0	0	0	0	0	14636	493	17	3		3	SLC26A7	8	92379031	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	19433137	92379031	53984991	606	84049											
RUNX1T1	862	broad.mit.edu	37	chr8	93026648	93026648	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatatataatgcagaatttAaaagactgtcactatagcat	5	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93026648	T	T	93026648	1	4	78	0	1	0	0	0	0	0	0	0	13858	377	13	5		5	RUNX1T1	8	93026648	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	647617	93026648	53337374	607	84050											
RUNX1T1	862	broad.mit.edu	37	chr8	93026719	93026719	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaactattataacaaaatActtgcgagaacggtgtctac	7	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93026719	T	T	93026719	1	4	78	0	1	0	0	0	0	0	0	0	13858	406	14	5		5	RUNX1T1	8	93026719	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	71	93026719	53337303	608	84051											
CDH17	1015	broad.mit.edu	37	chr8	95186447	95186447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggccattgggagtggccgGatcatccaggtctgtggcat	15	10	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95186447	A	A	95186447	3	1	78	1	0	0	0	0	1	0	0	0	3132	1174	41	4	2084	4	CDH17	8	95186447	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2159728	95186447	51177575	609	84052											
MATN2	4147	broad.mit.edu	37	chr8	98943445	98943446	+	Frame_Shift_Ins	INS	-	T	T													ctgtccacgggcaccatgacINStgggctggccatccagtatg					rs2290470	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98943446	T	T	98943445	7	5	78	1	0	1	1	0	0	0	0	0	9426	565	20	0	413	0	MATN2	8	98943445	Frame_Shift_Ins	INS	-	TCGA-17-Z049-01A-01W-0746-08	3756998	98943445	47420577	610	84053											
MATN2	4147	broad.mit.edu	37	chr8	99016120	99016120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccaccgggtttcctgatGgtctgtcaggtgtatccttc	11	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99016120	T	T	99016120	1	4	78	0	1	0	0	0	0	0	0	0	9426	1363	47	2		2	MATN2	8	99016120	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	72675	99016120	47347902	611	84054											
VPS13B	157680	broad.mit.edu	37	chr8	100711664	100711664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccataatatggatcttgggaCacttttatgtaggagcttgt	10	6	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100711664	T	T	100711664	1	4	78	0	1	0	0	0	0	0	0	0	17317	493	17	4		4	VPS13B	8	100711664	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1695544	100711664	45652358	612	84055											
RGS22	26166	broad.mit.edu	37	chr8	100974593	100974593	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattacgaggacatgtgtggGaccaaccaacattcagacta	9	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100974593	T	T	100974593	1	4	78	0	1	0	0	0	0	0	0	0	13414	1189	41	3		3	RGS22	8	100974593	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	262929	100974593	45389429	613	84056											
BAALC	79870	broad.mit.edu	37	chr8	104225035	104225035	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctgcatggtgggatttcTggcaacttttgttttttcat	10	7	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104225035	G	G	104225035	1	3	78	0	1	0	0	0	0	0	0	0	1284	1595	55	5		5	BAALC	8	104225035	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3250442	104225035	42138987	614	84057											
ZFPM2	23414	broad.mit.edu	37	chr8	106646455	106646455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaaatggcatctgtttGttatcattctttctacagaa	7	7	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106646455	T	T	106646455	1	4	78	0	1	0	0	0	0	0	0	0	17784	1392	48	3		3	ZFPM2	8	106646455	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2421420	106646455	39717567	615	84058											
PKHD1L1	93035	broad.mit.edu	37	chr8	110402670	110402670	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattgattgtgtattttcaTtaaattccaggtcatcacaa	5	6	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110402670	G	G	110402670	1	3	78	0	1	0	0	0	0	0	0	0	12067	1508	52	5		5	PKHD1L1	8	110402670	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3756215	110402670	35961352	616	84059											
CSMD3	114788	broad.mit.edu	37	chr8	113421257	113421257	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatacaaactggccaaaCaccactgatcaacaggaacc	5	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113421257	A	A	113421257	2	1	78	1	0	0	0	0	0	0	0	1	3980	465	17	3		3	CSMD3	8	113421257	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3018587	113421257	32942765	617	84060											
NOV	4856	broad.mit.edu	37	chr8	120429208	120429208	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagactggcatctgcacGggtaatcctgctccctctgc	9	15	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120429208	T	T	120429208	2	4	78	1	0	0	0	0	0	0	0	1	10648	1130	39	1		1	NOV	8	120429208	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7007951	120429208	25934814	618	84061											
ENPP2	5168	broad.mit.edu	37	chr8	120592356	120592356	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttgcaaccaccccttacCttctgtagacccttttgtat	4	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120592356	G	G	120592356	3	3	78	1	0	0	0	0	1	0	0	0	5172	695	24	4	918	4	ENPP2	8	120592356	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	163148	120592356	25771666	619	84062											
ENPP2	5168	broad.mit.edu	37	chr8	120594912	120594912	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatatggtaagatttaaaAcccttcaccttctatgggtc	8	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120594912	T	T	120594912	1	4	78	0	1	0	0	0	0	0	0	0	5172	58	2	5		5	ENPP2	8	120594912	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2556	120594912	25769110	620	84063											
FAM49B	51571	broad.mit.edu	37	chr8	130874493	130874493	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acctaacctctgagaaaattCgtaaaatttctttaatttgc	4	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130874493	G	G	130874493	3	3	78	1	0	0	0	0	1	0	0	0	5627	893	31	4	723	4	FAM49B	8	130874493	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	10279581	130874493	15489529	621	84064											
OC90	729330	broad.mit.edu	37	chr8	133053259	133053259	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggactgtcatttctgggCccaggcccctgggacacctg	12	15	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133053259	T	T	133053259	1	4	78	0	1	0	0	0	0	0	0	0	10909	754	26	4		4	OC90	8	133053259	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2178766	133053259	13310763	622	84065											
TG	7038	broad.mit.edu	37	chr8	133900711	133900711	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggggtcctactcagacttcAgcactcctttggcacatttt	8	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133900711	G	G	133900711	3	3	78	1	0	0	0	0	1	0	0	0	15936	188	7	5	2697	5	TG	8	133900711	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	847452	133900711	12463311	623	84066											
FAM135B	51059	broad.mit.edu	37	chr8	139153428	139153428	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgaggaatgacgagtcctAgaagaatcttacctgtacta	9	8	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139153428	G	G	139153428	1	3	78	0	1	0	0	0	0	0	0	0	5495	435	15	5		5	FAM135B	8	139153428	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5252717	139153428	7210594	624	84067											
FAM135B	51059	broad.mit.edu	37	chr8	139153645	139153645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacggtgaatgctgctgccCaagagtgcagtgctggaagc	15	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139153645	A	A	139153645	1	1	78	0	1	0	0	0	0	0	0	0	5495	609	21	2		2	FAM135B	8	139153645	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	217	139153645	7210377	625	84068											
FAM135B	51059	broad.mit.edu	37	chr8	139160736	139160736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatatatgacagaatttGggaagaaaacttgttttaga	9	2	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139160736	T	T	139160736	1	4	78	0	1	0	0	0	0	0	0	0	5495	1363	47	2		2	FAM135B	8	139160736	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7091	139160736	7203286	626	84069											
FAM135B	51059	broad.mit.edu	37	chr8	139380008	139380008	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttggatttttgacttggCaagaaaacacaatgaaaatc	9	5	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139380008	T	T	139380008	1	4	78	0	1	0	0	0	0	0	0	0	5495	725	25	4		4	FAM135B	8	139380008	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	219272	139380008	6984014	627	84070											
COL22A1	169044	broad.mit.edu	37	chr8	139614397	139614397	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctctccaggcttcccaggGaccccctgcaaggagaaaga	12	14	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139614397	A	A	139614397	2	1	78	1	0	0	0	0	0	0	0	1	3713	1161	41	4		4	COL22A1	8	139614397	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	234389	139614397	6749625	628	84071											
SLC45A4	57210	broad.mit.edu	37	chr8	142228515	142228515	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccgcatggagctcgaCgtggccgagggcttcgtgtc	16	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142228515	A	A	142228515	2	1	78	1	0	0	0	0	0	0	0	1	14757	523	19	3		3	SLC45A4	8	142228515	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2614118	142228515	4135507	629	84072											
PLEC	5339	broad.mit.edu	37	chr8	144995163	144995163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcccgtgcggaactgccgCagcaggtcccgccgctgctc	14	18	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144995163	A	A	144995163	2	1	78	1	0	0	0	0	0	0	0	1	12147	697	25	3		3	PLEC	8	144995163	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2766648	144995163	1368859	630	84073											
OPLAH	26873	broad.mit.edu	37	chr8	145114525	145114525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaagaggtccccacgggCttgggtgccaatgtgcagca	14	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145114525	A	A	145114525	3	1	78	1	0	0	0	0	1	0	0	0	10970	797	28	3	3628	3	OPLAH	8	145114525	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	119362	145114525	1249497	631	84074											
ZNF7	7553	broad.mit.edu	37	chr8	146068327	146068327	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagtggttttacgaatAtgggaatgccctggaagggt	15	7	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146068327	G	G	146068327	3	3	78	1	0	0	0	0	1	0	0	0	18229	449	16	5	1849	5	ZNF7	8	146068327	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	953802	146068327	295695	632	84075											
RCL1	10171	broad.mit.edu	37	chr9	4833008	4833008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcctcaggcagagccaGcccactcgctcagttatatg	10	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4833008	T	T	4833008	1	4	78	0	1	0	0	0	0	0	0	0	13286	986	34	3		3	RCL1	9	4833008	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08		4833008	136380423	633	84076											
C9orf46	55848	broad.mit.edu	37	chr9	5360930	5360930	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctggctctaggacaccacTgtgtgaaagggagcagaaat	13	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5360930	C	C	5360930	1	2	78	0	1	0	0	0	0	0	0	0	2510	1595	55	5		5	C9orf46	9	5360930	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	527922	5360930	135852501	634	84077											
GLDC	2731	broad.mit.edu	37	chr9	6604786	6604786	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcacagcaggccaggctcTagaaaggaagtgagagaaaa	13	7	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6604786	C	C	6604786	5	2	78	1	0	0	0	0	0	0	1	0	6497	1536	53	5	2278	5	GLDC	9	6604786	Splice_Site	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1243856	6604786	134608645	635	84078											
PTPRD	5789	broad.mit.edu	37	chr9	8449907	8449907	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatagaaaagcagagaatTgcacctgcactccccccacc	7	15	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8449907	A	A	8449907	1	1	78	0	1	0	0	0	0	0	0	0	12907	1827	63	5		5	PTPRD	9	8449907	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1845121	8449907	132763524	636	84079											
PTPRD	5789	broad.mit.edu	37	chr9	8521415	8521415	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcatcttcaggtgtcagatCttctgcccccaacatccact	5	15	6	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8521415	A	A	8521415	3	1	78	1	0	0	0	0	1	0	0	0	12907	913	32	3	5091	3	PTPRD	9	8521415	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	71508	8521415	132692016	637	84080											
KIAA1797	54914	broad.mit.edu	37	chr9	20862468	20862468	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctatcttctaggcatagTcttatttgtttcttaagttt	6	7	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20862468	C	C	20862468	1	2	78	0	1	0	0	0	0	0	0	0	8328	1682	58	5		5	KIAA1797	9	20862468	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	12341053	20862468	120350963	638	84081											
TEK	7010	broad.mit.edu	37	chr9	27197413	27197413	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcggaagatgacttttaTgttgaagtggagagaaggtc	14	4	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27197413	C	C	27197413	2	2	78	1	0	0	0	0	0	0	0	1	15873	1471	51	5		5	TEK	9	27197413	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	6334945	27197413	114016018	639	84082											
NOL6	65083	broad.mit.edu	37	chr9	33462736	33462736	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcacagcaaagtcctccaGgattgcttcaacattgggca	9	12	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33462736	C	C	33462736	3	2	78	1	0	0	0	0	1	0	0	0	10620	991	35	4	77	4	NOL6	9	33462736	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6265323	33462736	107750695	640	84083											
CCIN	881	broad.mit.edu	37	chr9	36171041	36171042	+	Frame_Shift_Del	DEL	TG	-	-													cccaacagctgccccttggaTgtgtcccatgctatatgctc							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36171042	-	-	36171041	7	5	78	1	0	1	0	1	0	0	0	0	2906	1461	51	0	1544	0	CCIN	9	36171041	Frame_Shift_Del	DEL	TG	TCGA-17-Z049-01A-01W-0746-08	2708305	36171041	105042390	641	84084											
CNTNAP3	79937	broad.mit.edu	37	chr9	39118245	39118245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccaacccaccagctcaGtggggttccatctgaaagac	8	14	3	2	rs146599628		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39118245	T	T	39118245	3	4	78	1	0	0	0	0	1	0	0	0	3680	1020	36	3	1818	3	CNTNAP3	9	39118245	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2947204	39118245	102095186	642	84085											
FAM75A2	642265	broad.mit.edu	37	chr9	39887061	39887061	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggacctgctttcacaactGcagaggtgaggcacttcccc	10	14	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39887061	T	T	39887061	2	4	78	1	0	0	0	0	0	0	0	1	5671	1306	46	3		3	FAM75A2	9	39887061	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	768816	39887061	101326370	643	84086											
FAM75A6	389730	broad.mit.edu	37	chr9	43628477	43628477	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctccaccatcccacaccctGattgcccaattctcctgcta	3	20	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43628477	T	T	43628477	1	4	78	0	1	0	0	0	0	0	0	0	5674	1305	45	3		3	FAM75A6	9	43628477	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3741416	43628477	97584954	644	84087											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69420315	69420315	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatacaactttcagaaaAtatatgtgatagtacatctt	4	5	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69420315	G	G	69420315	3	3	78	1	0	0	0	0	1	0	0	0	650	101	4	5	1255	5	ANKRD20A4	9	69420315	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	25791838	69420315	71793116	645	84088											
FXN	2395	broad.mit.edu	37	chr9	71686113	71686113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcagtatcagagtatagGgccaaggggacggtccttgg	15	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71686113	T	T	71686113	1	4	78	0	1	0	0	0	0	0	0	0	6174	1247	43	2		2	FXN	9	71686113	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2265798	71686113	69527318	646	84089											
TRPM3	80036	broad.mit.edu	37	chr9	73424736	73424736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtatatttcactccttcCtaattccagagctgcttgga	7	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73424736	A	A	73424736	1	1	78	0	1	0	0	0	0	0	0	0	16712	696	24	2		2	TRPM3	9	73424736	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1738623	73424736	67788695	647	84090											
TMEM2	23670	broad.mit.edu	37	chr9	74332845	74332845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgtcatcatataataaCttggtagagaatacccacgc	7	9	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74332845	A	A	74332845	1	1	78	0	1	0	0	0	0	0	0	0	16244	580	20	3		3	TMEM2	9	74332845	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	908109	74332845	66880586	648	84091											
UBQLN1	29979	broad.mit.edu	37	chr9	86278707	86278707	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaactactgctttcctttTttctccctttttccttcttt	2	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86278707	A	A	86278707	1	1	78	0	1	0	0	0	0	0	0	0	17022	1856	64	5		5	UBQLN1	9	86278707	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	11945862	86278707	54934724	649	84092											
IPPK	64768	broad.mit.edu	37	chr9	95432170	95432170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaggtaccggacctgcGccgcacgtccaccgctcacc	12	17	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95432170	T	T	95432170	1	4	78	0	1	0	0	0	0	0	0	0	7871	1102	38	3		3	IPPK	9	95432170	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9153463	95432170	45781261	650	84093											
PTCH1	5727	broad.mit.edu	37	chr9	98238999	98238999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacttaggaacagaggaagCtgtgatgtccccaaagctct	10	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98238999	A	A	98238999	1	1	78	0	1	0	0	0	0	0	0	0	12836	812	28	3		3	PTCH1	9	98238999	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2806829	98238999	42974432	651	84094											
TDRD7	23424	broad.mit.edu	37	chr9	100243134	100243134	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaagtgctgtttagcagatCttccacaatctattggcatg	8	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100243134	G	G	100243134	3	3	78	1	0	0	0	0	1	0	0	0	15857	913	32	4	2376	4	TDRD7	9	100243134	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2004135	100243134	40970297	652	84095											
TMOD1	7111	broad.mit.edu	37	chr9	100315641	100315641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccggagctggaggaagCcttggcaaatgcttcagatg	15	8	1	1	rs148848308		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100315641	A	A	100315641	3	1	78	1	0	0	0	0	1	0	0	0	16356	739	26	3	366	3	TMOD1	9	100315641	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	72507	100315641	40897790	653	84096											
GABBR2	9568	broad.mit.edu	37	chr9	101258599	101258599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaaatgaacttgagacCcagaccaaacttgaggctct	11	9	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101258599	A	A	101258599	1	1	78	0	1	0	0	0	0	0	0	0	6216	638	22	2		2	GABBR2	9	101258599	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	942958	101258599	39954832	654	84097											
COL15A1	1306	broad.mit.edu	37	chr9	101811914	101811914	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggaagtgtcctgtggCtgcccctgcattcacaacaa	11	12	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101811914	G	G	101811914	1	3	78	0	1	0	0	0	0	0	0	0	3704	812	28	4		4	COL15A1	9	101811914	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	553315	101811914	39401517	655	84098											
SEC61B	10952	broad.mit.edu	37	chr9	101990179	101990179	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaacattttcctctctttcAggaaaaatgccagctgtggg	9	9	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101990179	G	G	101990179	5	3	78	1	0	0	0	0	0	0	1	0	14115	202	7	5	110	5	SEC61B	9	101990179	Splice_Site	SNP	A	TCGA-17-Z049-01A-01W-0746-08	178265	101990179	39223252	656	84099											
ACTL7B	10880	broad.mit.edu	37	chr9	111617113	111617113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcagccactgcagggctGtccccggggcagaggaggct	18	13	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111617113	T	T	111617113	3	4	78	1	0	0	0	0	1	0	0	0	201	1368	48	3	153	3	ACTL7B	9	111617113	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9626934	111617113	29596318	657	84100											
EPB41L4B	54566	broad.mit.edu	37	chr9	111970426	111970426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactgcatataacacagacCtacatacatagacaggggtg	8	9	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111970426	A	A	111970426	1	1	78	0	1	0	0	0	0	0	0	0	5198	696	24	2		2	EPB41L4B	9	111970426	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	353313	111970426	29243005	658	84101											
EPB41L4B	54566	broad.mit.edu	37	chr9	112018805	112018805	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaactgcgactcgtaagCccacaggattctgaagggca	11	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112018805	A	A	112018805	1	1	78	0	1	0	0	0	0	0	0	0	5198	754	26	3		3	EPB41L4B	9	112018805	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	48379	112018805	29194626	659	84102											
UGCG	7357	broad.mit.edu	37	chr9	114694390	114694390	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattatttgagggaaaaaaAaaaggatttgtcttgtagcc	10	3	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114694390	C	C	114694390	1	2	78	0	1	0	0	0	0	0	0	0	17065	29	1	5		5	UGCG	9	114694390	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2675585	114694390	26519041	660	84103											
FKBP15	23307	broad.mit.edu	37	chr9	116029879	116029879	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagtacttaggggcacaatGaggatatggtgttaaaagtt	14	3	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116029879	C	C	116029879	1	2	78	0	1	0	0	0	0	0	0	0	5962	1305	45	4		4	FKBP15	9	116029879	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1335489	116029879	25183552	661	84104											
TNFSF15	9966	broad.mit.edu	37	chr9	117567977	117567977	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgtagaaacaagaaaTgtgatacatcaagaaactct	7	7	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117567977	A	A	117567977	1	1	78	0	1	0	0	0	0	0	0	0	16431	1479	51	5		5	TNFSF15	9	117567977	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1538098	117567977	23645454	662	84105											
DBC1	1620	broad.mit.edu	37	chr9	122000925	122000925	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccccactttttccactggCttcctaccttgaaggtgcag	8	14	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122000925	G	G	122000925	1	3	78	0	1	0	0	0	0	0	0	0	4280	812	28	4		4	DBC1	9	122000925	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4432948	122000925	19212506	663	84106											
SH2D3C	10044	broad.mit.edu	37	chr9	130509376	130509376	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacataggtgacagaagtCttcaacaacagattccctcc	6	13	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130509376	T	T	130509376	1	4	78	0	1	0	0	0	0	0	0	0	14347	928	32	4		4	SH2D3C	9	130509376	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	8508451	130509376	10704055	664	84107											
PKN3	29941	broad.mit.edu	37	chr9	131475465	131475465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcaccagcgtggccgaGgcgagcttgccagtgagtag	15	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131475465	T	T	131475465	3	4	78	1	0	0	0	0	1	0	0	0	12076	1000	35	2	996	2	PKN3	9	131475465	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	966089	131475465	9737966	665	84108											
FAM73B	84895	broad.mit.edu	37	chr9	131811791	131811791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaaggtgtggccaggagGtgcctcagcttcgagggcag	17	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131811791	T	T	131811791	1	4	78	0	1	0	0	0	0	0	0	0	5669	1276	44	3		3	FAM73B	9	131811791	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	336326	131811791	9401640	666	84109											
ABL1	25	broad.mit.edu	37	chr9	133738439	133738439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtaggctgggactgccGggggtgcccagggtacgtgg	21	8	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133738439	T	T	133738439	1	4	78	0	1	0	0	0	0	0	0	0	92	1131	39	1		1	ABL1	9	133738439	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1926648	133738439	7474992	667	84110											
FIBCD1	84929	broad.mit.edu	37	chr9	133780763	133780763	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccacgtgcagctcgtaGgcagcctgtgtggtcagggc	16	11	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133780763	T	T	133780763	2	4	78	1	0	0	0	0	0	0	0	1	5941	987	35	2		2	FIBCD1	9	133780763	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	42324	133780763	7432668	668	84111											
BAT2L1	84726	broad.mit.edu	37	chr9	134340162	134340162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcagaagtcatcaatgGgcagcatgttccggcaacag	12	10	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134340162	T	T	134340162	3	4	78	1	0	0	0	0	1	0	0	0	1325	1232	43	2	1459	2	BAT2L1	9	134340162	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	559399	134340162	6873269	669	84112											
SETX	23064	broad.mit.edu	37	chr9	135172287	135172287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctacctctgtcagtagaCgatagaggaggccaacaata	9	10	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135172287	A	A	135172287	3	1	78	1	0	0	0	0	1	0	0	0	14254	536	19	3	2149	3	SETX	9	135172287	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	832125	135172287	6041144	670	84113											
C9orf7	11094	broad.mit.edu	37	chr9	136328714	136328714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcccaccccgggggtcttGctggtcgggaatctgctggg	16	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136328714	T	T	136328714	1	4	78	0	1	0	0	0	0	0	0	0	2519	1334	46	3		3	C9orf7	9	136328714	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1156427	136328714	4884717	671	84114											
SARDH	1757	broad.mit.edu	37	chr9	136573445	136573446	+	Missense_Mutation	DNP	CA	AG	AG													ctcctcatgttgcgcccggcCagcggctcatcgtgggggaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	136573446	AG	AG	136573445	3	1	78	1	0	0	0	0	1	0	0	0	13953	581	21	2	1366	2	SARDH	9	136573445	Missense_Mutation	DNP	CA	TCGA-17-Z049-01A-01W-0746-08	244731	136573445	4639986	672	84115											
COL5A1	1289	broad.mit.edu	37	chr9	137624072	137624072	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggtccgtgggcccctgcaCctgcgcgcactgggtcactt	13	16	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137624072	G	G	137624072	1	3	78	0	1	0	0	0	0	0	0	0	3728	522	18	4		4	COL5A1	9	137624072	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1050627	137624072	3589359	673	84116											
COL5A1	1289	broad.mit.edu	37	chr9	137715332	137715332	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggtaagtagcccttgaaGcccagaaagcgggacggggg	16	11	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137715332	T	T	137715332	1	4	78	0	1	0	0	0	0	0	0	0	3728	986	34	3		3	COL5A1	9	137715332	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	91260	137715332	3498099	674	84117											
SLC34A3	142680	broad.mit.edu	37	chr9	140128067	140128067	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggtgcagcacaccgtcacGacccctctggcccccagttg	11	17	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140128067	A	A	140128067	1	1	78	0	1	0	0	0	0	0	0	0	14683	1073	37	4		4	SLC34A3	9	140128067	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2412735	140128067	1085364	675	84118											
CACNA1B	774	broad.mit.edu	37	chr9	141010115	141010115	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagagttccacctccctcAgcaatggcggggccatgtga	12	12	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141010115	T	T	141010115	3	4	78	1	0	0	0	0	1	0	0	0	2565	188	7	5	5923	5	CACNA1B	9	141010115	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	882048	141010115	203316	676	84119											
GTPBP4	23560	broad.mit.edu	37	chr10	1056510	1056510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcctttttattatagtaGtattgctggaagatagcagc	8	5	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1056510	T	T	1056510	1	4	78	0	1	0	0	0	0	0	0	0	6947	1044	36	3		3	GTPBP4	10	1056510	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08		1056510	134478237	677	84120											
ASB13	79754	broad.mit.edu	37	chr10	5683788	5683788	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccacgtgtagtcagaCggcttcttcccgcggttgtc	11	14	2	1	rs149225019	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5683788	T	T	5683788	2	4	78	1	0	0	0	0	0	0	0	1	1021	523	19	4		4	ASB13	10	5683788	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4627278	5683788	129850959	678	84121											
ITIH5	80760	broad.mit.edu	37	chr10	7604942	7604942	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggtcatggagtccagcTaattgccaggagctgaggcg	17	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7604942	A	A	7604942	1	1	78	0	1	0	0	0	0	0	0	0	7977	1537	53	5		5	ITIH5	10	7604942	3'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1921154	7604942	127929805	679	84122											
CUBN	8029	broad.mit.edu	37	chr10	17061728	17061728	+	Intron	DEL	C	-	-													atgagattactacctgggttCcattatttgttcatggtatt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17061728	-	-	17061728	6	5	78	0	1	1	0	1	0	0	0	0	4084	870	30	0		0	CUBN	10	17061728	Intron	DEL	C	TCGA-17-Z049-01A-01W-0746-08	9456786	17061728	118473019	680	84123											
CUBN	8029	broad.mit.edu	37	chr10	17083166	17083166	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaataaggattcggataccCtatactctctaagatgccat	7	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17083166	G	G	17083166	3	3	78	1	0	0	0	0	1	0	0	0	4084	681	24	4	7152	4	CUBN	10	17083166	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	21438	17083166	118451581	681	84124											
MLLT10	8028	broad.mit.edu	37	chr10	21962822	21962822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagtttacagagcctcaGtgttggctcatctccagttg	11	9	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21962822	T	T	21962822	3	4	78	1	0	0	0	0	1	0	0	0	9719	1029	36	3	1633	3	MLLT10	10	21962822	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4879656	21962822	113571925	682	84125											
GPR158	57512	broad.mit.edu	37	chr10	25861792	25861792	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaatatgtgcctcattgacCgctgggactacatgacagca	9	11	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25861792	T	T	25861792	3	4	78	1	0	0	0	0	1	0	0	0	6728	652	23	4	1755	4	GPR158	10	25861792	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3898970	25861792	109672955	683	84126											
GPR158	57512	broad.mit.edu	37	chr10	25887861	25887861	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagagagggcaaaagaggaGaacggaggtcagcctcgtgc	16	9	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25887861	T	T	25887861	3	4	78	1	0	0	0	0	1	0	0	0	6728	933	33	3	3348	3	GPR158	10	25887861	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	26069	25887861	109646886	684	84127											
GAD2	2572	broad.mit.edu	37	chr10	26570076	26570076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgactgtctttatgcgGttgactttctctggaaatgt	10	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26570076	T	T	26570076	1	4	78	0	1	0	0	0	0	0	0	0	6240	1276	44	3		3	GAD2	10	26570076	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	682215	26570076	108964671	685	84128											
MAP3K8	1326	broad.mit.edu	37	chr10	30747105	30747105	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgctcatccacatgcagacGggcaccccaccctgggtgaa	10	16	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30747105	A	A	30747105	2	1	78	1	0	0	0	0	0	0	0	1	9348	1103	39	4		4	MAP3K8	10	30747105	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4177029	30747105	104787642	686	84129											
ZEB1	6935	broad.mit.edu	37	chr10	31610340	31610340	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtattctcattgtggagagaTgacttgttatagcaaggagt	12	4	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31610340	C	C	31610340	1	2	78	0	1	0	0	0	0	0	0	0	17749	1479	51	5		5	ZEB1	10	31610340	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	863235	31610340	103924407	687	84130											
RASSF4	83937	broad.mit.edu	37	chr10	45480135	45480135	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctccagtccaggaatggcCctcacgtccccatctgcccc	8	20	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45480135	G	G	45480135	1	3	78	0	1	0	0	0	0	0	0	0	13196	638	22	4		4	RASSF4	10	45480135	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	13869795	45480135	90054612	688	84131											
A1CF	29974	broad.mit.edu	37	chr10	52603771	52603771	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacataatggtataagctCatcctcaaaaaggtctcggg	8	9	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52603771	A	A	52603771	4	1	78	1	0	0	0	0	0	1	0	0	2	835	29	3	1613	3	A1CF	10	52603771	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7123636	52603771	82930976	689	84132											
PCDH15	65217	broad.mit.edu	37	chr10	55570538	55570538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatcgacagatatttacaCagcacctatcaggctccttg	6	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55570538	A	A	55570538	1	1	78	0	1	0	0	0	0	0	0	0	11605	493	17	3		3	PCDH15	10	55570538	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2966767	55570538	79964209	690	84133											
PCDH15	65217	broad.mit.edu	37	chr10	55700796	55700796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttttgatgtaactttacGttcacagaaaaattgagaga	7	4	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55700796	T	T	55700796	1	4	78	0	1	0	0	0	0	0	0	0	11605	1160	40	3		3	PCDH15	10	55700796	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	130258	55700796	79833951	691	84134											
BICC1	80114	broad.mit.edu	37	chr10	60461881	60461881	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttggccatcaaaactgaaGatcggagccaaatccaagaa	9	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60461881	T	T	60461881	3	4	78	1	0	0	0	0	1	0	0	0	1433	933	33	3	295	3	BICC1	10	60461881	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4761085	60461881	75072866	692	84135											
CCDC6	8030	broad.mit.edu	37	chr10	61592194	61592194	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagctgaaaactacttttCacttaaattcctccaggcat	5	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61592194	A	A	61592194	1	1	78	0	1	0	0	0	0	0	0	0	2858	841	29	3		3	CCDC6	10	61592194	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1130313	61592194	73942553	693	84136											
ANK3	288	broad.mit.edu	37	chr10	61829123	61829123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctgcttatctcttacaCagtgtccttgtagtacccct	5	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61829123	A	A	61829123	3	1	78	1	0	0	0	0	1	0	0	0	622	478	17	3	1958	3	ANK3	10	61829123	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	236929	61829123	73705624	694	84137											
RHOBTB1	9886	broad.mit.edu	37	chr10	62631940	62631940	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgggggcctcacacagtctCacctgcagattttgatttga	10	10	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62631940	G	G	62631940	1	3	78	0	1	0	0	0	0	0	0	0	13442	841	29	4		4	RHOBTB1	10	62631940	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	802817	62631940	72902807	695	84138											
CTNNA3	29119	broad.mit.edu	37	chr10	67680535	67680535	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaggttgcagtgagccaaGatggcgtcactgcaccgcag	13	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67680535	A	A	67680535	1	1	78	0	1	0	0	0	0	0	0	0	4048	957	33	4		4	CTNNA3	10	67680535	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5048595	67680535	67854212	696	84139											
CTNNA3	29119	broad.mit.edu	37	chr10	68381578	68381578	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaataatggaaattattttaGattagcaaggaaatgcagca	8	3	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68381578	T	T	68381578	1	4	78	0	1	0	0	0	0	0	0	0	4048	957	33	3		3	CTNNA3	10	68381578	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	701043	68381578	67153169	697	84140											
DNAJC12	56521	broad.mit.edu	37	chr10	69557042	69557042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttatagtaaaacagcttgGggataatatttcactgcagc	9	6	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69557042	T	T	69557042	1	4	78	0	1	0	0	0	0	0	0	0	4671	1247	43	2		2	DNAJC12	10	69557042	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1175464	69557042	65977705	698	84141											
VPS26A	9559	broad.mit.edu	37	chr10	70917684	70917684	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaagtaatgaagtaagttGatcccaaaggagttccagca	11	6	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70917684	T	T	70917684	1	4	78	0	1	0	0	0	0	0	0	0	17324	1305	45	3		3	VPS26A	10	70917684	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1360642	70917684	64617063	699	84142											
ADAMTS14	140766	broad.mit.edu	37	chr10	72504963	72504963	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggatgctcacgacttctGgatccctgtgtgtggcagga	13	9	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72504963	A	A	72504963	1	1	78	0	1	0	0	0	0	0	0	0	259	1363	47	4		4	ADAMTS14	10	72504963	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1587279	72504963	63029784	700	84143											
CDH23	64072	broad.mit.edu	37	chr10	73544623	73544623	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgctcttcctcccctcCctcctccttctctgactggc	5	21	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73544623	G	G	73544623	1	3	78	0	1	0	0	0	0	0	0	0	3138	638	22	4		4	CDH23	10	73544623	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1039660	73544623	61990124	701	84144											
CDH23	64072	broad.mit.edu	37	chr10	73550964	73550964	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcctggagctgctgctgcTggctgaggacatcgggctgc	15	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73550964	A	A	73550964	3	1	78	1	0	0	0	0	1	0	0	0	3138	1580	55	5	6652	5	CDH23	10	73550964	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	6341	73550964	61983783	702	84145											
CDH23	64072	broad.mit.edu	37	chr10	73553269	73553269	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaggcactgtcattgccaAtatcacggccattgaccacg	9	14	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73553269	G	G	73553269	3	3	78	1	0	0	0	0	1	0	0	0	3138	101	4	5	7115	5	CDH23	10	73553269	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2305	73553269	61981478	703	84146											
OIT3	170392	broad.mit.edu	37	chr10	74677423	74677423	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcctccactgccagagatCttgaatagcctcttggtcag	8	13	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74677423	G	G	74677423	1	3	78	0	1	0	0	0	0	0	0	0	10944	928	32	4		4	OIT3	10	74677423	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1124154	74677423	60857324	704	84147											
DYDC1	143241	broad.mit.edu	37	chr10	82101928	82101928	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtggcatgtcttcagactAcaaatcccatggtccttctg	8	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82101928	T	T	82101928	1	4	78	0	1	0	0	0	0	0	0	0	4878	406	14	5		5	DYDC1	10	82101928	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	7424505	82101928	53432819	705	84148											
TSPAN14	81619	broad.mit.edu	37	chr10	82275878	82275878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaccctgctttgccctgCtccttaccagagctcactag	6	18	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82275878	A	A	82275878	1	1	78	0	1	0	0	0	0	0	0	0	16763	812	28	3		3	TSPAN14	10	82275878	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	173950	82275878	53258869	706	84149											
SH2D4B	387694	broad.mit.edu	37	chr10	82403749	82403749	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccttttttttctgttttagGaggaaattatcactgtttca	6	6	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82403749	C	C	82403749	3	2	78	1	0	0	0	0	1	0	0	0	14349	1188	41	4	1056	4	SH2D4B	10	82403749	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	127871	82403749	53130998	707	84150											
C10orf99	387695	broad.mit.edu	37	chr10	85933576	85933576	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacttctgcagcacagctccCttcccaggacgtgaaaatct	8	14	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85933576	G	G	85933576	1	3	78	0	1	0	0	0	0	0	0	0	1639	696	24	4		4	C10orf99	10	85933576	5'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3529827	85933576	49601171	708	84151											
LRIT1	26103	broad.mit.edu	37	chr10	85992365	85992365	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcctttgtgctgggcacaGagggtccagtggccaggaca	14	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85992365	T	T	85992365	3	4	78	1	0	0	0	0	1	0	0	0	9034	942	33	3	685	3	LRIT1	10	85992365	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	58789	85992365	49542382	709	84152											
PANK1	53354	broad.mit.edu	37	chr10	91352811	91352811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctcccccaacacacacCcctcctgttctgtaaagtgt	4	20	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91352811	T	T	91352811	1	4	78	0	1	0	0	0	0	0	0	0	11510	638	22	4		4	PANK1	10	91352811	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5360446	91352811	44181936	710	84153											
KIF20B	9585	broad.mit.edu	37	chr10	91528214	91528214	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagttgtgttcaattataaCtcatttatcttctctttcct	3	10	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91528214	T	T	91528214	1	4	78	0	1	0	0	0	0	0	0	0	8357	580	20	4		4	KIF20B	10	91528214	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	175403	91528214	44006533	711	84154											
KIF20B	9585	broad.mit.edu	37	chr10	91533861	91533861	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatagtcattggaacttgcAtcctgtattgtaaatataaa	6	6	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91533861	T	T	91533861	1	4	78	0	1	0	0	0	0	0	0	0	8357	232	8	5		5	KIF20B	10	91533861	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5647	91533861	44000886	712	84155											
MARCH5	54708	broad.mit.edu	37	chr10	94109320	94109320	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaactgtggttgtaaagtgcAtaccaaattgatcttgaaga	10	5	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94109320	T	T	94109320	1	4	78	0	1	0	0	0	0	0	0	0	9396	232	8	5		5	MARCH5	10	94109320	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2575459	94109320	41425427	713	84156											
LGI1	9211	broad.mit.edu	37	chr10	95549825	95549825	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttaatttatcactacaGtttacatcaccttttttttt	2	7	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95549825	A	A	95549825	1	1	78	0	1	0	0	0	0	0	0	0	8823	1044	36	4		4	LGI1	10	95549825	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1440505	95549825	39984922	714	84157											
SORBS1	10580	broad.mit.edu	37	chr10	97101199	97101199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaggtaaaagagaacaaGggaagagaagaaagcaggga	15	2	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97101199	A	A	97101199	1	1	78	0	1	0	0	0	0	0	0	0	15041	1015	35	4		4	SORBS1	10	97101199	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1551374	97101199	38433548	715	84158											
TLL2	7093	broad.mit.edu	37	chr10	98165220	98165220	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagaccacggtaggagtgtTgtctcaaaagcatgctcaca	10	10	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98165220	A	A	98165220	1	1	78	0	1	0	0	0	0	0	0	0	16069	1827	63	5		5	TLL2	10	98165220	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1064021	98165220	37369527	716	84159											
SLIT1	6585	broad.mit.edu	37	chr10	98774051	98774051	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttgccaggtgctgggtagGgttagaggtgaccaagactg	16	8	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98774051	C	C	98774051	1	2	78	0	1	0	0	0	0	0	0	0	14853	1247	43	4		4	SLIT1	10	98774051	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	608831	98774051	36760696	717	84160											
SLC25A28	81894	broad.mit.edu	37	chr10	101370759	101370759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccacctacttgatatacCgtcctgaaggcactagccat	6	15	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101370759	A	A	101370759	2	1	78	1	0	0	0	0	0	0	0	1	14605	639	23	1		1	SLC25A28	10	101370759	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2596708	101370759	34163988	718	84161											
ERLIN1	10613	broad.mit.edu	37	chr10	101923658	101923658	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagaattccccactacctAtgatgcaatcttactgagtc	5	13	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101923658	G	G	101923658	1	3	78	0	1	0	0	0	0	0	0	0	5274	464	16	5		5	ERLIN1	10	101923658	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	552899	101923658	33611089	719	84162											
C10orf79	80217	broad.mit.edu	37	chr10	105928572	105928572	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagttcagccaaatagctcTtggctaagttatgcatctct	7	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105928572	A	A	105928572	3	1	78	1	0	0	0	0	1	0	0	0	1629	1609	56	5	2448	5	C10orf79	10	105928572	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	4004914	105928572	29606175	720	84163											
TECTB	6975	broad.mit.edu	37	chr10	114045787	114045787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaccctcattcccatcgcGgggaaacagattcatcctga	8	13	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114045787	T	T	114045787	1	4	78	0	1	0	0	0	0	0	0	0	15870	1131	39	1		1	TECTB	10	114045787	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8117215	114045787	21488960	721	84164											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236276	118236276	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatttgtttgaagattctCagaataagttgggagcagaa	10	4	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118236276	A	A	118236276	3	1	78	1	0	0	0	0	1	0	0	0	12247	827	29	3	1327	3	PNLIPRP3	10	118236276	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4190489	118236276	17298471	722	84165											
PNLIP	5406	broad.mit.edu	37	chr10	118315205	118315205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagactgggaaagaaagCgtattttcagtcaacttcag	12	6	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118315205	A	A	118315205	1	1	78	0	1	0	0	0	0	0	0	0	12244	783	27	3		3	PNLIP	10	118315205	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	78929	118315205	17219542	723	84166											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118386475	118386475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaacattcgggttgttgGggcggagacagctttcttaa	13	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118386475	T	T	118386475	3	4	78	1	0	0	0	0	1	0	0	0	12246	1232	43	2	451	2	PNLIPRP2	10	118386475	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	71270	118386475	17148272	724	84167											
SLC18A2	6571	broad.mit.edu	37	chr10	119015219	119015219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcgaggtgatggccgcGtgctggaggcaggggtggat	21	6	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119015219	T	T	119015219	1	4	78	0	1	0	0	0	0	0	0	0	14539	1160	40	3		3	SLC18A2	10	119015219	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	628744	119015219	16519528	725	84168											
WDR11	55717	broad.mit.edu	37	chr10	122643308	122643308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggcagtatttggcagtcGtattcagagataaacccctg	10	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122643308	T	T	122643308	3	4	78	1	0	0	0	0	1	0	0	0	17400	1145	40	3	1810	3	WDR11	10	122643308	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3628089	122643308	12891439	726	84169											
TACC2	10579	broad.mit.edu	37	chr10	123846990	123846990	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccttgacacgcttgggggtGaaaggagacccggagtcact	14	11	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123846990	T	T	123846990	4	4	78	1	0	0	0	0	0	1	0	0	15621	1291	45	3	4985	3	TACC2	10	123846990	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1203682	123846990	11687757	727	84170											
TACC2	10579	broad.mit.edu	37	chr10	123969848	123969848	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagggtgatgttttggtacAagaggagaggtgccccaatg	17	5	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123969848	G	G	123969848	1	3	78	0	1	0	0	0	0	0	0	0	15621	145	5	5		5	TACC2	10	123969848	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	122858	123969848	11564899	728	84171											
BTBD16	118663	broad.mit.edu	37	chr10	124092041	124092041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaccaggtactgagaactGtacccgaacaaggggaagaa	11	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124092041	A	A	124092041	1	1	78	0	1	0	0	0	0	0	0	0	1550	1392	48	4		4	BTBD16	10	124092041	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	122193	124092041	11442706	729	84172											
DMBT1	1755	broad.mit.edu	37	chr10	124390487	124390487	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtctttcagatgccaccttGaggttggtcaatttaaattc	8	8	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124390487	C	C	124390487	3	2	78	1	0	0	0	0	1	0	0	0	4617	1281	45	4	5831	4	DMBT1	10	124390487	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	298446	124390487	11144260	730	84173											
EBF3	253738	broad.mit.edu	37	chr10	131671648	131671648	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagtaactccacatgaatGaacataaaggatggtgcaaa	10	6	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131671648	A	A	131671648	1	1	78	0	1	0	0	0	0	0	0	0	4922	1305	45	4		4	EBF3	10	131671648	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7281161	131671648	3863099	731	84174											
TCERG1L	256536	broad.mit.edu	37	chr10	132891338	132891338	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcaggtctcggccgccCcacgcccgtgtccgtctcca	11	20	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132891338	A	A	132891338	1	1	78	0	1	0	0	0	0	0	0	0	15808	638	22	2		2	TCERG1L	10	132891338	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1219690	132891338	2643409	732	84175											
KNDC1	85442	broad.mit.edu	37	chr10	134981686	134981686	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgctccctctccaggccCttctcagctggcgggttcag	12	17	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134981686	T	T	134981686	1	4	78	0	1	0	0	0	0	0	0	0	8497	696	24	4		4	KNDC1	10	134981686	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2090348	134981686	553061	733	84176											
TUBGCP2	10844	broad.mit.edu	37	chr10	135098867	135098867	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagagccgccttgggtccTctgtgggacgaggtggccac	18	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135098867	A	A	135098867	1	1	78	0	1	0	0	0	0	0	0	0	16892	1566	54	5		5	TUBGCP2	10	135098867	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	117181	135098867	435880	734	84177											
MUC5B	727897	broad.mit.edu	37	chr11	1253222	1253222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcccccaaccctggcccCcaggcctgtgtgggaacttc	9	18	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1253222	A	A	1253222	1	1	78	0	1	0	0	0	0	0	0	0	10073	638	22	2		2	MUC5B	11	1253222	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08		1253222	133753294	735	84178											
MRPL23	6150	broad.mit.edu	37	chr11	1977312	1977312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggggccggtggccgtggGggtgcttacattccaggcag	19	11	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1977312	T	T	1977312	1	4	78	0	1	0	0	0	0	0	0	0	9883	1247	43	2		2	MRPL23	11	1977312	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	724090	1977312	133029204	736	84179											
OR56B1	387748	broad.mit.edu	37	chr11	5757908	5757908	+	Frame_Shift_Del	DEL	C	-	-													cttgctgcaaacaccctcatCctcatcatcatctggcagaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5757908	-	-	5757908	7	5	78	1	0	1	0	1	0	0	0	0	11231	845	30	0	164	0	OR56B1	11	5757908	Frame_Shift_Del	DEL	C	TCGA-17-Z049-01A-01W-0746-08	3780596	5757908	129248608	737	84180											
OR56B4	196335	broad.mit.edu	37	chr11	6129756	6129756	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagcacttgtagctccCacctcatcctcatcctcttc	4	18	4	1	rs58431577	byFrequency;by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6129756	T	T	6129756	3	4	78	1	0	0	0	0	1	0	0	0	11232	594	21	4	750	4	OR56B4	11	6129756	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	371848	6129756	128876760	738	84181											
OR2AG2	338755	broad.mit.edu	37	chr11	6790218	6790218	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagttgcctagaaccaaAtatattatcagtggaagctt	7	6	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6790218	C	C	6790218	1	2	78	0	1	0	0	0	0	0	0	0	11079	116	4	5		5	OR2AG2	11	6790218	5'Flank	SNP	A	TCGA-17-Z049-01A-01W-0746-08	660462	6790218	128216298	739	84182											
OR10A6	390093	broad.mit.edu	37	chr11	7949605	7949605	+	Frame_Shift_Del	DEL	C	-	-													ccaaaataatcaaaaaggtgCctgtgaatgcatagatttca							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7949605	-	-	7949605	7	5	78	1	0	1	0	1	0	0	0	0	10988	739	26	0	342	0	OR10A6	11	7949605	Frame_Shift_Del	DEL	C	TCGA-17-Z049-01A-01W-0746-08	1159387	7949605	127056911	740	84183											
DENND5A	23258	broad.mit.edu	37	chr11	9215202	9215202	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catgagagctgtaatcgtctCcgccacagtcatcagtctct	8	13	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9215202	G	G	9215202	3	3	78	1	0	0	0	0	1	0	0	0	4476	864	30	4	2963	4	DENND5A	11	9215202	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1265597	9215202	125791314	741	84184											
ZNF143	7702	broad.mit.edu	37	chr11	9517965	9517965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttcttggttccaattaGgggtcaagtagagacaggct	11	6	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9517965	T	T	9517965	1	4	78	0	1	0	0	0	0	0	0	0	17858	1015	35	2		2	ZNF143	11	9517965	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	302763	9517965	125488551	742	84185											
CTR9	9646	broad.mit.edu	37	chr11	10789585	10789585	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaactgatactctacattctCgtttgaatcttttttaagag	5	7	3	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10789585	T	T	10789585	1	4	78	0	1	0	0	0	0	0	0	0	4058	899	31	4		4	CTR9	11	10789585	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1271620	10789585	124216931	743	84186											
PDE3B	5140	broad.mit.edu	37	chr11	14665857	14665857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcccccttctgccgggcgcGcctctcgctgggcgccctgg	13	20	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14665857	C	C	14665857	3	2	78	1	0	0	0	0	1	0	0	0	11732	1087	38	4	238	4	PDE3B	11	14665857	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3876272	14665857	120340659	744	84187											
PDE3B	5140	broad.mit.edu	37	chr11	14865565	14865565	+	Frame_Shift_Del	DEL	C	-	-													atttctagtggctacaaatgCccctcaggtaggaaatattt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14865565	-	-	14865565	7	5	78	1	0	1	0	1	0	0	0	0	11732	739	26	0	2559	0	PDE3B	11	14865565	Frame_Shift_Del	DEL	C	TCGA-17-Z049-01A-01W-0746-08	199708	14865565	120140951	745	84188											
PLEKHA7	144100	broad.mit.edu	37	chr11	16838565	16838565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcctgctccggccctggtCggtgaactctggggagccaa	14	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16838565	A	A	16838565	3	1	78	1	0	0	0	0	1	0	0	0	12156	884	31	3	1769	3	PLEKHA7	11	16838565	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1973000	16838565	118167951	746	84189											
SLC6A5	9152	broad.mit.edu	37	chr11	20629280	20629280	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataattgaacatatattatgCatgctaggacctatactagg	7	6	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20629280	T	T	20629280	1	4	78	0	1	0	0	0	0	0	0	0	14801	725	25	4		4	SLC6A5	11	20629280	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3790715	20629280	114377236	747	84190											
SLC17A6	57084	broad.mit.edu	37	chr11	22380855	22380855	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctaccttaaaattattggcGatttttttattactttaaat	3	5	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22380855	T	T	22380855	1	4	78	0	1	0	0	0	0	0	0	0	14534	1073	37	3		3	SLC17A6	11	22380855	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1751575	22380855	112625661	748	84191											
FSHB	2488	broad.mit.edu	37	chr11	30255032	30255032	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtaaatgttagagcaagcAgtattcaatttctgtctcat	9	6	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30255032	T	T	30255032	1	4	78	0	1	0	0	0	0	0	0	0	6132	203	7	5		5	FSHB	11	30255032	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	7874177	30255032	104751484	749	84192											
MPPED2	744	broad.mit.edu	37	chr11	30517091	30517091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaataagaaaaaagagcacCaattagcacgttcatttccc	6	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30517091	A	A	30517091	1	1	78	0	1	0	0	0	0	0	0	0	9836	609	21	2		2	MPPED2	11	30517091	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	262059	30517091	104489425	750	84193											
ACCSL	390110	broad.mit.edu	37	chr11	44070178	44070178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccaagtgctatatatgCtctcattctttatagcctta	7	9	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44070178	A	A	44070178	1	1	78	0	1	0	0	0	0	0	0	0	134	812	28	3		3	ACCSL	11	44070178	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	13553087	44070178	90936338	751	84194											
ALX4	60529	broad.mit.edu	37	chr11	44289203	44289203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaaaagccattgtcaccaGggtgagatgcccgcctggag	13	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44289203	T	T	44289203	1	4	78	0	1	0	0	0	0	0	0	0	558	1015	35	2		2	ALX4	11	44289203	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	219025	44289203	90717313	752	84195											
PRDM11	56981	broad.mit.edu	37	chr11	45117337	45117337	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctggggcacccatttcGggtcacaaggtagggttcaa	13	10	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45117337	T	T	45117337	1	4	78	0	1	0	0	0	0	0	0	0	12558	1131	39	1		1	PRDM11	11	45117337	5'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	828134	45117337	89889179	753	84196											
GYLTL1B	120071	broad.mit.edu	37	chr11	45946098	45946098	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacaagcactactccggcctCtatgggctaatgaagctggt	10	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45946098	G	G	45946098	2	3	78	1	0	0	0	0	0	0	0	1	6972	900	32	4		4	GYLTL1B	11	45946098	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	828761	45946098	89060418	754	84197											
DGKZ	8525	broad.mit.edu	37	chr11	46391377	46391377	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcccctcctccactcatgCgcaggactgcagagcgcttc	9	17	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46391377	T	T	46391377	1	4	78	0	1	0	0	0	0	0	0	0	4514	783	27	4		4	DGKZ	11	46391377	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	445279	46391377	88615139	755	84198											
MADD	8567	broad.mit.edu	37	chr11	47317082	47317082	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcatcggcgtgagtccAgctgttatgatccgcagctc	11	12	2	2	rs143711042	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47317082	T	T	47317082	2	4	78	1	0	0	0	0	0	0	0	1	9240	175	7	5		5	MADD	11	47317082	Silent	SNP	A	TCGA-17-Z049-01A-01W-0746-08	925705	47317082	87689434	756	84199											
OR4A15	81328	broad.mit.edu	37	chr11	55135316	55135316	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgctctgtgtgaggcCctggtcagggaaaacgtggt	16	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135316	A	A	55135316	1	1	78	0	1	0	0	0	0	0	0	0	11134	638	22	2		2	OR4A15	11	55135316	5'Flank	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7818234	55135316	79871200	757	84200											
OR5D18	219438	broad.mit.edu	37	chr11	55587917	55587917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaaaactccaggcacaCagtcaaagtggcctctgtgt	8	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55587917	A	A	55587917	3	1	78	1	0	0	0	0	1	0	0	0	11251	478	17	3	814	3	OR5D18	11	55587917	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	452601	55587917	79418599	758	84201											
SPRYD5	84767	broad.mit.edu	37	chr11	55657301	55657301	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaataaaatgataattttgGaattagcaaatgtgtgggtt	9	1	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55657301	C	C	55657301	1	2	78	0	1	0	0	0	0	0	0	0	15229	1189	41	4		4	SPRYD5	11	55657301	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	69384	55657301	79349215	759	84202											
OR5B2	390190	broad.mit.edu	37	chr11	58190697	58190697	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggacactggttagtcctAgaagaatgaactttgtcact	10	8	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58190697	G	G	58190697	3	3	78	1	0	0	0	0	1	0	0	0	11244	420	15	5	895	5	OR5B2	11	58190697	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2533396	58190697	76815819	760	84203											
MS4A14	84689	broad.mit.edu	37	chr11	60165297	60165297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtcttggatacttgtaaCctcatgtacccatttctctc	7	11	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60165297	A	A	60165297	1	1	78	0	1	0	0	0	0	0	0	0	9952	522	18	3		3	MS4A14	11	60165297	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1974600	60165297	74841219	761	84204											
MS4A14	84689	broad.mit.edu	37	chr11	60182863	60182863	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggaaaacaaaaaaaaaatCagacatgattctgtcatatt	5	5	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60182863	T	T	60182863	1	4	78	0	1	0	0	0	0	0	0	0	9952	841	29	4		4	MS4A14	11	60182863	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	17566	60182863	74823653	762	84205											
PRPF19	27339	broad.mit.edu	37	chr11	60671055	60671055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacataacccaggggcctccCccgccatcacatcttttcct	5	18	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60671055	A	A	60671055	1	1	78	0	1	0	0	0	0	0	0	0	12670	638	22	2		2	PRPF19	11	60671055	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	488192	60671055	74335461	763	84206											
BEST1	7439	broad.mit.edu	37	chr11	61722757	61722757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggatcacgaggagctgcgGcaaggggctggggagggggc	23	7	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61722757	A	A	61722757	1	1	78	0	1	0	0	0	0	0	0	0	1409	1218	42	4		4	BEST1	11	61722757	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1051702	61722757	73283759	764	84207											
MTA2	9219	broad.mit.edu	37	chr11	62367578	62367578	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccaggggaaatacctgcaGggacatgcccaggcctcaga	12	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62367578	A	A	62367578	1	1	78	0	1	0	0	0	0	0	0	0	10003	1015	35	4		4	MTA2	11	62367578	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	644821	62367578	72638938	765	84208											
NRXN2	9379	broad.mit.edu	37	chr11	64436226	64436226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttggaggaggaacagtGggggaagagaggaaatgagg	20	2	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64436226	T	T	64436226	1	4	78	0	1	0	0	0	0	0	0	0	10761	1363	47	2		2	NRXN2	11	64436226	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2068648	64436226	70570290	766	84209											
OVOL1	5017	broad.mit.edu	37	chr11	65561659	65561659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagctgccctctgaagaCatgggccacttgacagaccc	10	16	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65561659	A	A	65561659	3	1	78	1	0	0	0	0	1	0	0	0	11420	477	17	3	264	3	OVOL1	11	65561659	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1125433	65561659	69444857	767	84210											
SART1	9092	broad.mit.edu	37	chr11	65745041	65745041	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccatccctagggctgctGgagaccacagtgcagaaggt	12	13	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65745041	T	T	65745041	2	4	78	1	0	0	0	0	0	0	0	1	13958	1335	47	2		2	SART1	11	65745041	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	183382	65745041	69261475	768	84211											
KLC2	64837	broad.mit.edu	37	chr11	66031147	66031147	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagggatcagaacaagtacAaggaggctgcccacctgctc	11	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66031147	T	T	66031147	4	4	78	1	0	0	0	0	0	1	0	0	8405	131	5	5	787	5	KLC2	11	66031147	Nonsense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	286106	66031147	68975369	769	84212											
GAL	51083	broad.mit.edu	37	chr11	68458334	68458335	+	Intron	DNP	TC	CT	CT													gtgtcgtggttgtaattctcTcatgtgcatattaagaagtt							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	68458335	CT	CT	68458334	1	2	78	0	1	0	0	0	0	0	0	0	6258	1566	54	5		5	GAL	11	68458334	Intron	DNP	TC	TCGA-17-Z049-01A-01W-0746-08	2427187	68458334	66548182	770	84213											
TPCN2	219931	broad.mit.edu	37	chr11	68846295	68846295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccacctgtcagggccagGgtgaggctgggcagtgctgg	18	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68846295	T	T	68846295	1	4	78	0	1	0	0	0	0	0	0	0	16520	1247	43	2		2	TPCN2	11	68846295	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	387961	68846295	66160221	771	84214											
ANO1	55107	broad.mit.edu	37	chr11	69998551	69998551	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttacttttctggttcccTgaaggaggctgtcaaggttt	10	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69998551	A	A	69998551	1	1	78	0	1	0	0	0	0	0	0	0	695	1595	55	5		5	ANO1	11	69998551	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1152256	69998551	65007965	772	84215											
ARRB1	408	broad.mit.edu	37	chr11	74977391	74977391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttatccagaggcccggcCagatgtgactcagagtatgg	14	10	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74977391	A	A	74977391	1	1	78	0	1	0	0	0	0	0	0	0	984	609	21	2		2	ARRB1	11	74977391	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4978840	74977391	60029125	773	84216											
ODZ4	26011	broad.mit.edu	37	chr11	78381572	78381572	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaagatatactgcctctGgctgtgtagtagcagcacca	9	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78381572	C	C	78381572	3	2	78	1	0	0	0	0	1	0	0	0	10932	1357	47	4	2503	4	ODZ4	11	78381572	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3404181	78381572	56624944	774	84217											
FAM181B	220382	broad.mit.edu	37	chr11	82443607	82443607	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaatcgtaggacacctgatGgggcggcggcggcgggggca	20	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82443607	A	A	82443607	3	1	78	1	0	0	0	0	1	0	0	0	5555	1348	47	4	119	4	FAM181B	11	82443607	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4062035	82443607	52562909	775	84218											
DLG2	1740	broad.mit.edu	37	chr11	84257185	84257185	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatctcaagttgaaatgtaGtccctactgctggaggtggg	12	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84257185	C	C	84257185	1	2	78	0	1	0	0	0	0	0	0	0	4595	1044	36	4		4	DLG2	11	84257185	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1813578	84257185	50749331	776	84219											
CCDC83	220047	broad.mit.edu	37	chr11	85626666	85626666	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagagaatagacacctgcCagcttctctaaatttctcct	5	12	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85626666	T	T	85626666	1	4	78	0	1	0	0	0	0	0	0	0	2885	609	21	4		4	CCDC83	11	85626666	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1369481	85626666	49379850	777	84220											
NAALAD2	10003	broad.mit.edu	37	chr11	89885637	89885637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgacccactcactccaGgctatccagcaaaaggtaag	9	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89885637	T	T	89885637	3	4	78	1	0	0	0	0	1	0	0	0	10222	1000	35	2	803	2	NAALAD2	11	89885637	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4258971	89885637	45120879	778	84221											
FAT3	120114	broad.mit.edu	37	chr11	92430651	92430651	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattcattaaaactgacTttcactaaacttctttaacc	2	9	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92430651	A	A	92430651	1	1	78	0	1	0	0	0	0	0	0	0	5748	1624	56	5		5	FAT3	11	92430651	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2545014	92430651	42575865	779	84222											
HEPHL1	341208	broad.mit.edu	37	chr11	93815724	93815724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagtttgtgaaatccaaCcgaatgcatggtatgacaaa	9	6	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93815724	A	A	93815724	3	1	78	1	0	0	0	0	1	0	0	0	7122	506	18	3	1895	3	HEPHL1	11	93815724	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1385073	93815724	41190792	780	84223											
MRE11A	4361	broad.mit.edu	37	chr11	94180429	94180429	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgatgctgaattctgccctCttccacctcttcgacctctt	5	16	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94180429	T	T	94180429	3	4	78	1	0	0	0	0	1	0	0	0	9853	913	32	4	411	4	MRE11A	11	94180429	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	364705	94180429	40826087	781	84224											
DLAT	1737	broad.mit.edu	37	chr11	111922022	111922022	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcttcagctttggcatGtttaaaagttcccgaagcaa	8	8	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111922022	T	T	111922022	3	4	78	1	0	0	0	0	1	0	0	0	4589	1377	48	3	1505	3	DLAT	11	111922022	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	17741593	111922022	23084494	782	84225											
TTC12	54970	broad.mit.edu	37	chr11	113194102	113194102	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactactgcttatggaggaaGaccaggaggaggatgaatgc	15	6	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113194102	A	A	113194102	3	1	78	1	0	0	0	0	1	0	0	0	16805	942	33	4	157	4	TTC12	11	113194102	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1272080	113194102	21812414	783	84226											
ZW10	9183	broad.mit.edu	37	chr11	113607342	113607343	+	Missense_Mutation	DNP	CG	GA	GA													tatagaagggttatacatacCgatccccaatttcttgcaag							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	113607343	GA	GA	113607342	3	3	78	1	0	0	0	0	1	0	0	0	18376	666	23	4	128	4	ZW10	11	113607342	Missense_Mutation	DNP	CG	TCGA-17-Z049-01A-01W-0746-08	413240	113607342	21399174	784	84227											
SCN4B	6330	broad.mit.edu	37	chr11	118007675	118007675	+	3'UTR	DEL	G	-	-													ggcacgtgggttctacggtcGgggctcaagcatcagtttca							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118007675	-	-	118007675	6	5	78	0	1	1	0	1	0	0	0	0	14034	1131	39	0		0	SCN4B	11	118007675	3'UTR	DEL	G	TCGA-17-Z049-01A-01W-0746-08	4400333	118007675	16998841	785	84228											
SCN4B	6330	broad.mit.edu	37	chr11	118012169	118012169	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accccctggcatccggggcaCatccactcccagacccccag	8	21	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118012169	T	T	118012169	1	4	78	0	1	0	0	0	0	0	0	0	14034	493	17	4		4	SCN4B	11	118012169	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4494	118012169	16994347	786	84229											
BCL9L	283149	broad.mit.edu	37	chr11	118770221	118770221	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggctgttgctgatccctgTagggaatagaagacaggggg	16	7	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118770221	A	A	118770221	1	1	78	0	1	0	0	0	0	0	0	0	1387	1653	57	5		5	BCL9L	11	118770221	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	758052	118770221	16236295	787	84230											
ARHGEF12	23365	broad.mit.edu	37	chr11	120312615	120312615	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctatacaacgagtgggcaGacttctttcagttttccgta	9	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120312615	T	T	120312615	1	4	78	0	1	0	0	0	0	0	0	0	899	957	33	3		3	ARHGEF12	11	120312615	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1542394	120312615	14693901	788	84231											
OR10G8	219869	broad.mit.edu	37	chr11	123900162	123900162	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaggaaatcacttcattaGtttatgaaggaagctttgtt	8	5	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123900162	T	T	123900162	1	4	78	0	1	0	0	0	0	0	0	0	10997	1044	36	3		3	OR10G8	11	123900162	5'Flank	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3587547	123900162	11106354	789	84232											
FEZ1	9638	broad.mit.edu	37	chr11	125330404	125330404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccctcaccttcataggaCcagttgttgttgaaggtctg	12	10	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125330404	A	A	125330404	3	1	78	1	0	0	0	0	1	0	0	0	5880	508	18	3	545	3	FEZ1	11	125330404	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1430242	125330404	9676112	790	84233											
ST3GAL4	6484	broad.mit.edu	37	chr11	126276453	126276453	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacaggtacatcgagctGtgagttcaccttccatgtcc	10	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126276453	T	T	126276453	5	4	78	1	0	0	0	0	0	0	1	0	15335	1392	48	3		3	ST3GAL4	11	126276453	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	946049	126276453	8730063	791	84234											
FLI1	2313	broad.mit.edu	37	chr11	128680420	128680420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacagcgccaacgccagctGtatcacctgggaggggacca	13	14	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128680420	T	T	128680420	3	4	78	1	0	0	0	0	1	0	0	0	5981	1377	48	3	930	3	FLI1	11	128680420	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2403967	128680420	6326096	792	84235											
FLI1	2313	broad.mit.edu	37	chr11	128680554	128680554	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggccctccgttattactatGataaaaacattatgaccaaa	6	9	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128680554	T	T	128680554	3	4	78	1	0	0	0	0	1	0	0	0	5981	1290	45	3	1064	3	FLI1	11	128680554	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	134	128680554	6325962	793	84236											
GLB1L3	112937	broad.mit.edu	37	chr11	134147091	134147091	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccctgggcccgcctggaaGacccgcctgtgtcgcgggcc	16	17	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134147091	C	C	134147091	1	2	78	0	1	0	0	0	0	0	0	0	6494	957	33	4		4	GLB1L3	11	134147091	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5466537	134147091	859425	794	84237											
DCP1B	196513	broad.mit.edu	37	chr12	2113409	2113409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgccccccgcctccacccCaaccctgggctgcactgctc	8	23	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2113409	A	A	2113409	1	1	78	0	1	0	0	0	0	0	0	0	4332	609	21	2		2	DCP1B	12	2113409	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08		2113409	131738486	795	84238											
CACNA1C	775	broad.mit.edu	37	chr12	2716038	2716038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcccatggctagaacgGtgaagttcaagccaggcagt	11	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2716038	T	T	2716038	1	4	78	0	1	0	0	0	0	0	0	0	2566	1276	44	3		3	CACNA1C	12	2716038	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	602629	2716038	131135857	796	84239											
CACNA1C	775	broad.mit.edu	37	chr12	2763117	2763117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccgctctgtctctcccCagttcccagcaccacattcc	4	22	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2763117	A	A	2763117	1	1	78	0	1	0	0	0	0	0	0	0	2566	609	21	2		2	CACNA1C	12	2763117	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	47079	2763117	131088778	797	84240											
EFCAB4B	84766	broad.mit.edu	37	chr12	3788294	3788294	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagggcacaaggatccgaaTtagaccatacccatccagga	10	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3788294	A	A	3788294	1	1	78	0	1	0	0	0	0	0	0	0	4977	1508	52	5		5	EFCAB4B	12	3788294	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1025177	3788294	130063601	798	84241											
ANO2	57101	broad.mit.edu	37	chr12	5687633	5687633	+	Frame_Shift_Del	DEL	G	-	-													tgttgaggagggcaaacacaGgtgccaggggaaaggaggcc							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5687633	-	-	5687633	7	5	78	1	0	1	0	1	0	0	0	0	697	1000	35	0	731	0	ANO2	12	5687633	Frame_Shift_Del	DEL	G	TCGA-17-Z049-01A-01W-0746-08	1899339	5687633	128164262	799	84242											
USP5	8078	broad.mit.edu	37	chr12	6965284	6965284	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagattgcccgggatggactGgggggactgcctgacattgt	17	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6965284	T	T	6965284	2	4	78	1	0	0	0	0	0	0	0	1	17208	1335	47	2		2	USP5	12	6965284	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1277651	6965284	126886611	800	84243											
CD163	9332	broad.mit.edu	37	chr12	7647515	7647515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttctatctaaagtgcaaCatgaattgtaaacttatctg	5	8	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7647515	A	A	7647515	1	1	78	0	1	0	0	0	0	0	0	0	2997	493	17	3		3	CD163	12	7647515	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	682231	7647515	126204380	801	84244											
TAS2R19	259294	broad.mit.edu	37	chr12	11175115	11175115	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccattggcaacatttccaAgaacaaatgcaaacactacc	5	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11175115	G	G	11175115	3	3	78	1	0	0	0	0	1	0	0	0	15689	72	3	5	846	5	TAS2R19	12	11175115	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3527600	11175115	122676780	802	84245											
GSG1	83445	broad.mit.edu	37	chr12	13241170	13241170	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctagtcctttgacgtcacTcacagctcccactccataac	4	16	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13241170	C	C	13241170	1	2	78	0	1	0	0	0	0	0	0	0	6886	1566	54	5		5	GSG1	12	13241170	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2066055	13241170	120610725	803	84246											
GRIN2B	2904	broad.mit.edu	37	chr12	14018651	14018651	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttccatcattaacaaTcaagttttacaggaaaacaa	3	9	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14018651	G	G	14018651	1	3	78	0	1	0	0	0	0	0	0	0	6846	1450	50	5		5	GRIN2B	12	14018651	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	777481	14018651	119833244	804	84247											
PDE3A	5139	broad.mit.edu	37	chr12	20705451	20705451	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaacagcaagagggaggagGaggagcagcaggaggggggc	22	5	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20705451	T	T	20705451	1	4	78	0	1	0	0	0	0	0	0	0	11731	1189	41	3		3	PDE3A	12	20705451	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6686800	20705451	113146444	805	84248											
ABCC9	10060	broad.mit.edu	37	chr12	22065815	22065815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaacttactccagttgtGttatttgtcccattctgggt	9	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22065815	T	T	22065815	3	4	78	1	0	0	0	0	1	0	0	0	59	1368	48	3	3921	3	ABCC9	12	22065815	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1360364	22065815	111786080	806	84249											
DDX11	1663	broad.mit.edu	37	chr12	31256895	31256895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacccaggaggagagtgtgGagtccagagtgctgccagga	16	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31256895	T	T	31256895	3	4	78	1	0	0	0	0	1	0	0	0	4376	1183	41	3	2948	3	DDX11	12	31256895	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9191080	31256895	102595000	807	84250											
FGD4	121512	broad.mit.edu	37	chr12	32729474	32729474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatacattctaaataaaaaGcataatatcttattccatta	2	6	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32729474	T	T	32729474	1	4	78	0	1	0	0	0	0	0	0	0	5892	986	34	3		3	FGD4	12	32729474	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1472579	32729474	101122421	808	84251											
KIF21A	55605	broad.mit.edu	37	chr12	39733842	39733842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaattgccaaaggaaattaCatcatttgtaagattgggtt	8	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39733842	A	A	39733842	1	1	78	0	1	0	0	0	0	0	0	0	8358	493	17	3		3	KIF21A	12	39733842	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7004368	39733842	94118053	809	84252											
C12orf40	283461	broad.mit.edu	37	chr12	40076498	40076498	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggatgaaataagacagtcaGactacattactgaaaaacac	7	8	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40076498	A	A	40076498	3	1	78	1	0	0	0	0	1	0	0	0	1699	942	33	4	802	4	C12orf40	12	40076498	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	342656	40076498	93775397	810	84253											
PDZRN4	29951	broad.mit.edu	37	chr12	41903762	41903762	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttcttcatgaagttacggTtgaggggttttgtataacaa	10	4	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41903762	A	A	41903762	1	1	78	0	1	0	0	0	0	0	0	0	11804	1740	60	5		5	PDZRN4	12	41903762	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1827264	41903762	91948133	811	84254											
PDZRN4	29951	broad.mit.edu	37	chr12	41966201	41966201	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagaaggcacaacagaCactgcaacatcctcatccaa	7	12	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41966201	T	T	41966201	2	4	78	1	0	0	0	0	0	0	0	1	11804	477	17	4		4	PDZRN4	12	41966201	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	62439	41966201	91885694	812	84255											
TMBIM6	7009	broad.mit.edu	37	chr12	50135996	50135996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggaagtgagaggagtctGgggctggggctgccttccag	20	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50135996	T	T	50135996	1	4	78	0	1	0	0	0	0	0	0	0	16106	1357	47	2		2	TMBIM6	12	50135996	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8169795	50135996	83715899	813	84256											
FAIM2	23017	broad.mit.edu	37	chr12	50294975	50294975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggctggggggaaggccCctgccttcatcccctcccca	14	16	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50294975	A	A	50294975	3	1	78	1	0	0	0	0	1	0	0	0	5422	623	22	2	845	2	FAIM2	12	50294975	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	158979	50294975	83556920	814	84257											
AQP2	359	broad.mit.edu	37	chr12	50344448	50344448	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggtattggcctcaacgacTccacctccccgccacgtgcc	9	18	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50344448	A	A	50344448	1	1	78	0	1	0	0	0	0	0	0	0	828	1566	54	5		5	AQP2	12	50344448	5'Flank	SNP	T	TCGA-17-Z049-01A-01W-0746-08	49473	50344448	83507447	815	84258											
ACVRL1	94	broad.mit.edu	37	chr12	52309765	52309765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtccccaccttgcctgcCccctggatcccaggtttggg	10	17	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52309765	A	A	52309765	1	1	78	0	1	0	0	0	0	0	0	0	225	638	22	2		2	ACVRL1	12	52309765	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1965317	52309765	81542130	816	84259											
KRT85	3891	broad.mit.edu	37	chr12	52758935	52758935	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtctccagcagcttgttcTgctgctccaggaagcgcacc	11	14	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52758935	A	A	52758935	3	1	78	1	0	0	0	0	1	0	0	0	8570	1580	55	5	1115	5	KRT85	12	52758935	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	449170	52758935	81092960	817	84260											
KRT72	140807	broad.mit.edu	37	chr12	52985176	52985176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaacacacgcacacacacGtacacatgcacacatactga	4	15	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52985176	T	T	52985176	1	4	78	0	1	0	0	0	0	0	0	0	8556	1160	40	3		3	KRT72	12	52985176	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	226241	52985176	80866719	818	84261											
CALCOCO1	57658	broad.mit.edu	37	chr12	54105846	54105846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagataggacactccttcCatgtgggggtggcagggccc	14	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54105846	A	A	54105846	3	1	78	1	0	0	0	0	1	0	0	0	2603	595	21	2	121	2	CALCOCO1	12	54105846	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1120670	54105846	79746049	819	84262											
NCKAP1L	3071	broad.mit.edu	37	chr12	54925989	54925989	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccatttcttatgggtccCattgagtgcttgaaggagtt	11	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54925989	A	A	54925989	2	1	78	1	0	0	0	0	0	0	0	1	10317	581	21	2		2	NCKAP1L	12	54925989	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	820143	54925989	78925906	820	84263											
DCD	117159	broad.mit.edu	37	chr12	55040935	55040935	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctggggcagaggcggcctCtggatcatctgcaaaggagg	16	10	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55040935	G	G	55040935	3	3	78	1	0	0	0	0	1	0	0	0	4316	922	32	4	281	4	DCD	12	55040935	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	114946	55040935	78810960	821	84264											
INHBC	3626	broad.mit.edu	37	chr12	57828906	57828906	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggactgcactgcagcacctCcacggggtcccacagggggc	14	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57828906	T	T	57828906	2	4	78	1	0	0	0	0	0	0	0	1	7813	842	30	4		4	INHBC	12	57828906	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2787971	57828906	76022989	822	84265											
GLI1	2735	broad.mit.edu	37	chr12	57858626	57858626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctccaggaggctcctacGgtcatctctccattggcacc	8	16	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57858626	T	T	57858626	3	4	78	1	0	0	0	0	1	0	0	0	6501	1116	39	1	374	1	GLI1	12	57858626	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	29720	57858626	75993269	823	84266											
GLI1	2735	broad.mit.edu	37	chr12	57861395	57861395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggtgagtccccctcccCacataattcgcccagaaaag	8	15	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57861395	A	A	57861395	1	1	78	0	1	0	0	0	0	0	0	0	6501	609	21	2		2	GLI1	12	57861395	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2769	57861395	75990500	824	84267											
METTL1	4234	broad.mit.edu	37	chr12	58162892	58162892	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgtagaactttcttcccctCctcagttgaggtgcctagat	8	12	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58162892	A	A	58162892	4	1	78	1	0	0	0	0	0	1	0	0	9586	864	30	3	116	3	METTL1	12	58162892	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	301497	58162892	75689003	825	84268											
FAM19A2	338811	broad.mit.edu	37	chr12	62274289	62274289	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccacctacaagaagctgctgGagggtgaagagagctggcaa	14	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62274289	C	C	62274289	1	2	78	0	1	0	0	0	0	0	0	0	5579	1189	41	4		4	FAM19A2	12	62274289	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4111397	62274289	71577606	826	84269											
AVPR1A	552	broad.mit.edu	37	chr12	63544125	63544125	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatgaggcgcgagcggcgCgcgggctgttgcagagtctt	17	10	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63544125	T	T	63544125	2	4	78	1	0	0	0	0	0	0	0	1	1236	755	27	4		4	AVPR1A	12	63544125	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1269836	63544125	70307770	827	84270											
HMGA2	8091	broad.mit.edu	37	chr12	66232336	66232336	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaaaacggccaagaggcaGacctaggaaatgggtgagta	14	6	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66232336	C	C	66232336	3	2	78	1	0	0	0	0	1	0	0	0	7291	942	33	4	246	4	HMGA2	12	66232336	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2688211	66232336	67619559	828	84271											
IRAK3	11213	broad.mit.edu	37	chr12	66583064	66583064	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccgcctcgtccccggggCtcgggcagccgagccatggc	14	18	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66583064	T	T	66583064	1	4	78	0	1	0	0	0	0	0	0	0	7894	812	28	4		4	IRAK3	12	66583064	5'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	350728	66583064	67268831	829	84272											
GRIP1	23426	broad.mit.edu	37	chr12	66771142	66771142	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttgagacggagtctctctCtgtcgcccaggctggagtgc	13	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66771142	G	G	66771142	1	3	78	0	1	0	0	0	0	0	0	0	6853	928	32	4		4	GRIP1	12	66771142	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	188078	66771142	67080753	830	84273											
GRIP1	23426	broad.mit.edu	37	chr12	66800232	66800232	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagtgaatgcaaagtaacaCatgactaatgatgagcactt	8	6	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66800232	T	T	66800232	1	4	78	0	1	0	0	0	0	0	0	0	6853	493	17	4		4	GRIP1	12	66800232	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	29090	66800232	67051663	831	84274											
LGR5	8549	broad.mit.edu	37	chr12	71977206	71977206	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcatttctccatcaatacCctggaacaggagcaccgggt	8	13	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71977206	T	T	71977206	1	4	78	0	1	0	0	0	0	0	0	0	8829	638	22	4		4	LGR5	12	71977206	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5176974	71977206	61874689	832	84275											
TRHDE	29953	broad.mit.edu	37	chr12	72825668	72825668	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttggaccagatgctggaaGagaaatttgctaatcagaag	11	6	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72825668	T	T	72825668	1	4	78	0	1	0	0	0	0	0	0	0	16603	957	33	3		3	TRHDE	12	72825668	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	848462	72825668	61026227	833	84276											
TRHDE	29953	broad.mit.edu	37	chr12	72936116	72936116	+	Missense_Mutation	SNP	G	T	T													ctaattttatgggccattcaGttttccagaggggtttgcaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72936116	T	T	72936116	3	4	78	1	0	0	0	0	1	0	0	0	16603	1029	36	3	1659	3	TRHDE	12	72936116	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	110448	72936116	60915779	834	84277	383	2									
TRHDE	29953	broad.mit.edu	37	chr12	72936124	72936124	+	Missense_Mutation	SNP	G	T	T													atgggccattcagttttccaGaggggtttgcaagtaagtaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72936124	T	T	72936124	3	4	78	1	0	0	0	0	1	0	0	0	16603	933	33	3	1667	3	TRHDE	12	72936124	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8	72936124	60915771	835	84278	383	2									
E2F7	144455	broad.mit.edu	37	chr12	77427880	77427880	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtaattcaggataattttCgtctatttaagagatggctt	8	5	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77427880	A	A	77427880	1	1	78	0	1	0	0	0	0	0	0	0	4912	899	31	3		3	E2F7	12	77427880	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4491756	77427880	56424015	836	84279											
NAV3	89795	broad.mit.edu	37	chr12	78592410	78592410	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattattggaacaatgaatCagggagtttcttcatcacca	7	7	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78592410	G	G	78592410	3	3	78	1	0	0	0	0	1	0	0	0	10279	827	29	4	6544	4	NAV3	12	78592410	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1164530	78592410	55259485	837	84280											
ACSS3	79611	broad.mit.edu	37	chr12	81568589	81568589	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcctgtgggaacaccagAtgctggcgcttatttccgtg	13	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81568589	T	T	81568589	3	4	78	1	0	0	0	0	1	0	0	0	190	333	12	5	1151	5	ACSS3	12	81568589	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2976179	81568589	52283306	838	84281											
CCDC59	29080	broad.mit.edu	37	chr12	82750917	82750917	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctcttcagctaaatagaGatgtttcagattatctgggt	8	7	4	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82750917	A	A	82750917	3	1	78	1	0	0	0	0	1	0	0	0	2857	942	33	4	451	4	CCDC59	12	82750917	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1182328	82750917	51100978	839	84282											
LRRIQ1	84125	broad.mit.edu	37	chr12	85446102	85446102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattactatgcttgaaatggTtatttttagataatgctgcc	7	6	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85446102	A	A	85446102	1	1	78	0	1	0	0	0	0	0	0	0	9116	1740	60	5		5	LRRIQ1	12	85446102	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2695185	85446102	48405793	840	84283											
CDK17	5128	broad.mit.edu	37	chr12	96780624	96780624	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacattaccaccaggacCccctctccctctgccatggc	7	18	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96780624	A	A	96780624	1	1	78	0	1	0	0	0	0	0	0	0	3163	638	22	2		2	CDK17	12	96780624	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	11334522	96780624	37071271	841	84284											
C12orf63	374467	broad.mit.edu	37	chr12	97102601	97102601	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaattgttttattttttgCttatttctctttctcctccc	4	9	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97102601	G	G	97102601	1	3	78	0	1	0	0	0	0	0	0	0	1719	812	28	4		4	C12orf63	12	97102601	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	321977	97102601	36749294	842	84285											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100431674	100431674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacttaagctgaaaactgCtttgagacaacatttggaaa	8	7	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100431674	A	A	100431674	1	1	78	0	1	0	0	0	0	0	0	0	17095	812	28	3		3	UHRF1BP1L	12	100431674	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3329073	100431674	33420221	843	84286											
UTP20	27340	broad.mit.edu	37	chr12	101767525	101767525	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtttgatatggttaccActtggtttggagcaaaaaag	12	5	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101767525	G	G	101767525	3	3	78	1	0	0	0	0	1	0	0	0	17226	159	6	5	7325	5	UTP20	12	101767525	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1335851	101767525	32084370	844	84287											
STAB2	55576	broad.mit.edu	37	chr12	104125238	104125238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcaggtgctgatgagcCcatctatgtatccgtcaggt	13	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104125238	A	A	104125238	1	1	78	0	1	0	0	0	0	0	0	0	15356	638	22	2		2	STAB2	12	104125238	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2357713	104125238	29726657	845	84288											
BTBD11	121551	broad.mit.edu	37	chr12	107937716	107937716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttctgtccacaggtgaCctggtgtcccgtgcaatgca	10	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107937716	A	A	107937716	3	1	78	1	0	0	0	0	1	0	0	0	1548	506	18	3	1300	3	BTBD11	12	107937716	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3812478	107937716	25914179	846	84289											
SART3	9733	broad.mit.edu	37	chr12	108954775	108954775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctgatcccacgctggCcccatggtcttgtatgtcgc	10	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108954775	A	A	108954775	2	1	78	1	0	0	0	0	0	0	0	1	13959	726	26	3		3	SART3	12	108954775	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1017059	108954775	24897120	847	84290											
C12orf51	283450	broad.mit.edu	37	chr12	112642205	112642205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtcaccctaggagaacCaccagctgcttgtgcacatt	10	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112642205	A	A	112642205	1	1	78	0	1	0	0	0	0	0	0	0	1709	609	21	2		2	C12orf51	12	112642205	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3687430	112642205	21209690	848	84291											
DDX54	79039	broad.mit.edu	37	chr12	113603731	113603731	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatcagcaacgcgggccagGccccgtagctccagcgatgc	12	15	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113603731	A	A	113603731	2	1	78	1	0	0	0	0	0	0	0	1	4405	1190	42	4		4	DDX54	12	113603731	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	961526	113603731	20248164	849	84292											
TPCN1	53373	broad.mit.edu	37	chr12	113716075	113716075	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagaccatagaaggagtaGacagagaggtccccacgtgg	14	9	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113716075	T	T	113716075	1	4	78	0	1	0	0	0	0	0	0	0	16519	957	33	3		3	TPCN1	12	113716075	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	112344	113716075	20135820	850	84293											
PLBD2	196463	broad.mit.edu	37	chr12	113824843	113824843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgggcccagatcttccGgcggaaccagtcactggtac	11	17	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113824843	T	T	113824843	3	4	78	1	0	0	0	0	1	0	0	0	12121	1116	39	1	1426	1	PLBD2	12	113824843	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	108768	113824843	20027052	851	84294											
TBX5	6910	broad.mit.edu	37	chr12	114804258	114804258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacagatttcctgagtggCtgaaccaggtgtgagagaat	13	6	0	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114804258	A	A	114804258	1	1	78	0	1	0	0	0	0	0	0	0	15783	812	28	3		3	TBX5	12	114804258	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	979415	114804258	19047637	852	84295											
TBX3	6926	broad.mit.edu	37	chr12	115112301	115112301	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgtctgcaccgtgagcggcGcgaaggcctccttgcccggg	15	16	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115112301	C	C	115112301	3	2	78	1	0	0	0	0	1	0	0	0	15781	1087	38	4	800	4	TBX3	12	115112301	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	308043	115112301	18739594	853	84296											
TAOK3	51347	broad.mit.edu	37	chr12	118599693	118599693	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggttttccagttccgtcTggtgctgtaaacggatcaga	12	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118599693	A	A	118599693	3	1	78	1	0	0	0	0	1	0	0	0	15668	1580	55	5	673	5	TAOK3	12	118599693	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3487392	118599693	15252202	854	84297											
CABP1	9478	broad.mit.edu	37	chr12	121097721	121097721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaattgaaggtaaaacttGgccccttgggggaaaggact	14	6	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121097721	T	T	121097721	1	4	78	0	1	0	0	0	0	0	0	0	2557	1363	47	2		2	CABP1	12	121097721	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2498028	121097721	12754174	855	84298											
OASL	8638	broad.mit.edu	37	chr12	121469379	121469379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggccttgatcaggctcaCatagacctcagggggtggct	14	11	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121469379	A	A	121469379	3	1	78	1	0	0	0	0	1	0	0	0	10897	478	17	3	1037	3	OASL	12	121469379	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	371658	121469379	12382516	856	84299											
RSRC2	65117	broad.mit.edu	37	chr12	123011232	123011232	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaccaacaccgccttacttCcccctccctacagcaggcag	5	21	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123011232	A	A	123011232	1	1	78	0	1	0	0	0	0	0	0	0	13826	870	30	3		3	RSRC2	12	123011232	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1541853	123011232	10840663	857	84300											
DNAH10	196385	broad.mit.edu	37	chr12	124382207	124382207	+	Intron	SNP	G	T	T													acctgtgcccaggagatggaGgctgcagtgagccatgatca							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124382207	T	T	124382207	1	4	78	0	1	0	0	0	0	0	0	0	4638	1015	35	2		2	DNAH10	12	124382207	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1370975	124382207	9469688	858	84301	384	2									
DNAH10	196385	broad.mit.edu	37	chr12	124382216	124382216	+	Intron	SNP	G	T	T													caggagatggaggctgcagtGagccatgatcacgccactgc							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124382216	T	T	124382216	1	4	78	0	1	0	0	0	0	0	0	0	4638	1305	45	3		3	DNAH10	12	124382216	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9	124382216	9469679	859	84302	384	2									
TMEM132D	121256	broad.mit.edu	37	chr12	129559374	129559374	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaacagctaacacactcttCcgcttggatttctggcagga	8	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129559374	A	A	129559374	2	1	78	1	0	0	0	0	0	0	0	1	16170	842	30	3		3	TMEM132D	12	129559374	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5177158	129559374	4292521	860	84303											
TMEM132D	121256	broad.mit.edu	37	chr12	129566381	129566381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgatcctgggctcctccaCctgcatgaagtcatttatca	9	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129566381	A	A	129566381	3	1	78	1	0	0	0	0	1	0	0	0	16170	507	18	3	1465	3	TMEM132D	12	129566381	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7007	129566381	4285514	861	84304											
TMEM132D	121256	broad.mit.edu	37	chr12	130184440	130184440	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcacggtctttggtaTatagtggatggccacgctgt	11	9	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130184440	C	C	130184440	3	2	78	1	0	0	0	0	1	0	0	0	16170	1406	49	5	2448	5	TMEM132D	12	130184440	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	618059	130184440	3667455	862	84305											
ANKLE2	23141	broad.mit.edu	37	chr12	133306845	133306845	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaaacgccctcacggaaaTggaattgctgcctgtgagga	12	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133306845	C	C	133306845	3	2	78	1	0	0	0	0	1	0	0	0	633	1464	51	5	925	5	ANKLE2	12	133306845	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3122405	133306845	545050	863	84306											
ZNF268	10795	broad.mit.edu	37	chr12	133764456	133764456	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatttgctcttgagtccacAggtcccacctctccaagaac	6	14	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133764456	T	T	133764456	5	4	78	1	0	0	0	0	0	0	1	0	17933	202	7	5	38	5	ZNF268	12	133764456	Splice_Site	SNP	A	TCGA-17-Z049-01A-01W-0746-08	457611	133764456	87439	864	84307											
IFT88	8100	broad.mit.edu	37	chr13	21237562	21237562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtatcccaaaagactgaGttcactgatttattgagctt	7	9	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21237562	T	T	21237562	1	4	78	0	1	0	0	0	0	0	0	0	7636	1044	36	3		3	IFT88	13	21237562	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08		21237562	93932316	865	84308											
RNF17	56163	broad.mit.edu	37	chr13	25373689	25373689	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatacaaatattcatggtagAttttggaaattctgaagtcc	7	5	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25373689	T	T	25373689	3	4	78	1	0	0	0	0	1	0	0	0	13572	333	12	5	1602	5	RNF17	13	25373689	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	4136127	25373689	89796189	866	84309											
NUPL1	9818	broad.mit.edu	37	chr13	25895016	25895016	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattttgtgtaggaaaccaaAgatacattttttaaaactca	5	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25895016	T	T	25895016	1	4	78	0	1	0	0	0	0	0	0	0	10869	87	3	5		5	NUPL1	13	25895016	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	521327	25895016	89274862	867	84310											
ATP8A2	51761	broad.mit.edu	37	chr13	26153876	26153876	+	Intron	DEL	G	-	-													ttgggcatgctgatggaaaaGggagcacaggctgtccccta							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26153876	-	-	26153876	6	5	78	0	1	1	0	1	0	0	0	0	1197	1015	35	0		0	ATP8A2	13	26153876	Intron	DEL	G	TCGA-17-Z049-01A-01W-0746-08	258860	26153876	89016002	868	84311											
FLT3	2322	broad.mit.edu	37	chr13	28607930	28607931	+	Intron	INS	-	A	A													aaacatggcaaacagtaaccINSattaaaaggatggaaaagag							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28607931	A	A	28607930	6	5	78	0	1	1	1	0	0	0	0	0	6000	609	21	0		0	FLT3	13	28607930	Intron	INS	-	TCGA-17-Z049-01A-01W-0746-08	2454054	28607930	86561948	869	84312											
C13orf33	84935	broad.mit.edu	37	chr13	31480658	31480658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgacgacgcgggcatggcGggggcggcctgcgagccggt	20	13	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31480658	T	T	31480658	2	4	78	1	0	0	0	0	0	0	0	1	1740	1103	39	1		1	C13orf33	13	31480658	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2872728	31480658	83689220	870	84313											
NBEA	26960	broad.mit.edu	37	chr13	35731448	35731448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacatcatcagagttattGcagtggattaaatggctaca	8	6	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35731448	T	T	35731448	1	4	78	0	1	0	0	0	0	0	0	0	10281	1334	46	3		3	NBEA	13	35731448	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4250790	35731448	79438430	871	84314											
DCLK1	9201	broad.mit.edu	37	chr13	36699755	36699755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttactctacacaatagCacattcgtatgtctgaaact	4	10	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36699755	A	A	36699755	1	1	78	0	1	0	0	0	0	0	0	0	4324	725	25	3		3	DCLK1	13	36699755	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	968307	36699755	78470123	872	84315											
TRPC4	7223	broad.mit.edu	37	chr13	38320545	38320545	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaatgattggtgtaatGtctggagtgaattcagagaa	12	4	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38320545	A	A	38320545	2	1	78	1	0	0	0	0	0	0	0	1	16705	1368	48	4		4	TRPC4	13	38320545	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1620790	38320545	76849333	873	84316											
RB1	5925	broad.mit.edu	37	chr13	48916851	48916851	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaaacatagaaatcagGtaaagtttcttgtataaata	6	4	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48916851	T	T	48916851	5	4	78	1	0	0	0	0	0	0	1	0	13206	1275	44	3	391	3	RB1	13	48916851	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	10596306	48916851	66253027	874	84317											
INTS6	26512	broad.mit.edu	37	chr13	51952610	51952610	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaaagtaaaaataagtcaGaattatcttgataaaatcta	4	5	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51952610	T	T	51952610	1	4	78	0	1	0	0	0	0	0	0	0	7852	957	33	3		3	INTS6	13	51952610	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3035759	51952610	63217268	875	84318											
TDRD3	81550	broad.mit.edu	37	chr13	61083814	61083814	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatgggatgtaatttttaGttaaaagacagtaagtagtt	10	1	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61083814	A	A	61083814	1	1	78	0	1	0	0	0	0	0	0	0	15854	1044	36	4		4	TDRD3	13	61083814	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9131204	61083814	54086064	876	84319			1	67		3	3	114	G		1.048489e-05
TDRD3	81550	broad.mit.edu	37	chr13	61083900	61083900	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctttattccttccaggttGatgagaaagctctgaagcac	8	10	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61083900	A	A	61083900	3	1	78	1	0	0	0	0	1	0	0	0	15854	1290	45	4	896	4	TDRD3	13	61083900	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	86	61083900	54085978	877	84320			1	67		3	3	114	G		1.048489e-05
TDRD3	81550	broad.mit.edu	37	chr13	61083927	61083927	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagctctgaagcacataacgGaaatgggcttcagtaaggaa	11	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61083927	A	A	61083927	3	1	78	1	0	0	0	0	1	0	0	0	15854	1175	41	4	923	4	TDRD3	13	61083927	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	27	61083927	54085951	878	84321			1	67		3	3	114	G		1.048489e-05
KLHL1	57626	broad.mit.edu	37	chr13	70293521	70293521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctacataatccagtagCcgggaacagtgatttgaagc	9	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70293521	A	A	70293521	2	1	78	1	0	0	0	0	0	0	0	1	8436	726	26	3		3	KLHL1	13	70293521	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	9209594	70293521	44876357	879	84322											
MYCBP2	23077	broad.mit.edu	37	chr13	77748446	77748446	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctctatacattcacccacCtatagtagagtatctgtggg	7	10	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77748446	T	T	77748446	3	4	78	1	0	0	0	0	1	0	0	0	10112	695	24	4	8573	4	MYCBP2	13	77748446	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7454925	77748446	37421432	880	84323											
SCEL	8796	broad.mit.edu	37	chr13	78142560	78142560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaattttattggaatacaGccatgcccctattgctctgg	8	11	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78142560	T	T	78142560	1	4	78	0	1	0	0	0	0	0	0	0	14000	986	34	3		3	SCEL	13	78142560	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	394114	78142560	37027318	881	84324											
SCEL	8796	broad.mit.edu	37	chr13	78146255	78146255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattaccgtgtcatttcttaAcaggcagtcctggtttccac	7	11	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78146255	T	T	78146255	1	4	78	0	1	0	0	0	0	0	0	0	14000	58	2	5		5	SCEL	13	78146255	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3695	78146255	37023623	882	84325											
GPC5	2262	broad.mit.edu	37	chr13	92345880	92345880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagagccctcctgaagatGcaatactgcccgcactgcca	9	15	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92345880	T	T	92345880	3	4	78	1	0	0	0	0	1	0	0	0	6666	1319	46	3	775	3	GPC5	13	92345880	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	14199625	92345880	22823998	883	84326											
RAP2A	5911	broad.mit.edu	37	chr13	98116801	98116801	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgcgtggtgttaatctacAgagaactgcagcccttattc	9	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98116801	T	T	98116801	1	4	78	0	1	0	0	0	0	0	0	0	13148	203	7	5		5	RAP2A	13	98116801	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5770921	98116801	17053077	884	84327											
ZIC5	85416	broad.mit.edu	37	chr13	100622616	100622616	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgtgattcaccagctcgtgCatggtgccgaaagttttgga	12	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100622616	G	G	100622616	3	3	78	1	0	0	0	0	1	0	0	0	17808	710	25	4	685	4	ZIC5	13	100622616	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2505815	100622616	14547262	885	84328											
NALCN	259232	broad.mit.edu	37	chr13	101727162	101727162	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagcagattggctcaaaatCactcttaggtgtatcatttg	8	7	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101727162	A	A	101727162	1	1	78	0	1	0	0	0	0	0	0	0	10242	841	29	3		3	NALCN	13	101727162	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1104546	101727162	13442716	886	84329											
FGF14	2259	broad.mit.edu	37	chr13	102670640	102670640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaccacctggtgtttcaCcaacattttcttcccagagt	6	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102670640	A	A	102670640	1	1	78	0	1	0	0	0	0	0	0	0	5900	522	18	3		3	FGF14	13	102670640	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	943478	102670640	12499238	887	84330											
TPP2	7174	broad.mit.edu	37	chr13	103271309	103271309	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttattcgtgatatcactcAgcaaaatcatttaagggcca	7	8	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103271309	T	T	103271309	1	4	78	0	1	0	0	0	0	0	0	0	16536	203	7	5		5	TPP2	13	103271309	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	600669	103271309	11898569	888	84331											
SLC10A2	6555	broad.mit.edu	37	chr13	103701839	103701839	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatgttttagtagttttgtTattgtgaaacatgaaaagca	8	3	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103701839	C	C	103701839	1	2	78	0	1	0	0	0	0	0	0	0	14487	1769	61	5		5	SLC10A2	13	103701839	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	430530	103701839	11468039	889	84332											
MYO16	23026	broad.mit.edu	37	chr13	109817397	109817397	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctgaaaatggaaattcCatctcaaatggtaagcactt	7	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109817397	A	A	109817397	2	1	78	1	0	0	0	0	0	0	0	1	10158	581	21	2		2	MYO16	13	109817397	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6115558	109817397	5352481	890	84333											
COL4A2	1284	broad.mit.edu	37	chr13	111155653	111155653	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtgcccatggccatgggCcagcagccctggccacagtg	13	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111155653	T	T	111155653	1	4	78	0	1	0	0	0	0	0	0	0	3722	754	26	4		4	COL4A2	13	111155653	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1338256	111155653	4014225	891	84334											
OR4K17	390436	broad.mit.edu	37	chr14	20586172	20586172	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttgcccttttgtggtcccAatgtggtagacagcattttt	9	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20586172	T	T	20586172	3	4	78	1	0	0	0	0	1	0	0	0	11165	130	5	5	609	5	OR4K17	14	20586172	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08		20586172	86763368	892	84335											
TPPP2	122664	broad.mit.edu	37	chr14	21498833	21498833	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaacaagaacttctcCaagctgtgcaaagactgtgg	9	9	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21498833	A	A	21498833	2	1	78	1	0	0	0	0	0	0	0	1	16538	581	21	2		2	TPPP2	14	21498833	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	912661	21498833	85850707	893	84336											
CHD8	57680	broad.mit.edu	37	chr14	21876727	21876727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctgcctgcagattcacCatgggaaaaaaaaaatgtta	8	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21876727	A	A	21876727	1	1	78	0	1	0	0	0	0	0	0	0	3362	609	21	2		2	CHD8	14	21876727	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	377894	21876727	85472813	894	84337											
EFS	10278	broad.mit.edu	37	chr14	23828857	23828857	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagctgggccagggtgtccTggtcatgggaggccaaggct	18	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23828857	A	A	23828857	3	1	78	1	0	0	0	0	1	0	0	0	4999	1580	55	5	867	5	EFS	14	23828857	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1952130	23828857	83520683	895	84338											
MYH7	4625	broad.mit.edu	37	chr14	23887170	23887170	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccactgcctttccctgccacAgtgccctgccccagacggaa	8	19	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23887170	T	T	23887170	1	4	78	0	1	0	0	0	0	0	0	0	10133	203	7	5		5	MYH7	14	23887170	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	58313	23887170	83462370	896	84339											
MYH7	4625	broad.mit.edu	37	chr14	23893969	23893969	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagagccaacagtagcccagGagcctcaccgcctgcacttg	10	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23893969	C	C	23893969	1	2	78	0	1	0	0	0	0	0	0	0	10133	1189	41	4		4	MYH7	14	23893969	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6799	23893969	83455571	897	84340											
REC8	9985	broad.mit.edu	37	chr14	24647746	24647746	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaacagtgcattgcaaaGaggcaaaggggccctgagga	14	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24647746	A	A	24647746	1	1	78	0	1	0	0	0	0	0	0	0	13307	957	33	4		4	REC8	14	24647746	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	753777	24647746	82701794	898	84341											
TM9SF1	10548	broad.mit.edu	37	chr14	24659658	24659658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctggggtggaatctccCgggcgatgttcttggtgcga	18	8	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24659658	A	A	24659658	3	1	78	1	0	0	0	0	1	0	0	0	16100	652	23	1	516	1	TM9SF1	14	24659658	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	11912	24659658	82689882	899	84342											
NFATC4	4776	broad.mit.edu	37	chr14	24842998	24842998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacacacgtgtacggctgGtgttccgggtacacgtgccc	12	12	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24842998	T	T	24842998	3	4	78	1	0	0	0	0	1	0	0	0	10460	1261	44	3	1868	3	NFATC4	14	24842998	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	183340	24842998	82506542	900	84343											
HECTD1	25831	broad.mit.edu	37	chr14	31642916	31642916	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattcgagataacagctcctCagttaatccatgcttggcta	7	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31642916	T	T	31642916	3	4	78	1	0	0	0	0	1	0	0	0	7106	835	29	4	7288	4	HECTD1	14	31642916	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6799918	31642916	75706624	901	84344											
PRPF39	55015	broad.mit.edu	37	chr14	45565408	45565408	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagaccttgaaaagcggcacGacaacattaaaccatcagat	7	11	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45565408	C	C	45565408	3	2	78	1	0	0	0	0	1	0	0	0	12675	1058	37	4	433	4	PRPF39	14	45565408	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	13922492	45565408	61784132	902	84345											
MDGA2	161357	broad.mit.edu	37	chr14	47324158	47324158	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatattcatattttaatatTtgctcaagatccacctttaa	3	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47324158	G	G	47324158	1	3	78	0	1	0	0	0	0	0	0	0	9500	1856	64	5		5	MDGA2	14	47324158	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1758750	47324158	60025382	903	84346											
C14orf183	196913	broad.mit.edu	37	chr14	50551964	50551964	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttatttttccttgcttcCactcctcctccctgtccact	2	18	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50551964	G	G	50551964	3	3	78	1	0	0	0	0	1	0	0	0	1779	595	21	4	481	4	C14orf183	14	50551964	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3227806	50551964	56797576	904	84347											
PYGL	5836	broad.mit.edu	37	chr14	51378963	51378963	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacatcaaacatggaggatGggttgatcttcactttgtac	11	7	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51378963	C	C	51378963	3	2	78	1	0	0	0	0	1	0	0	0	12969	1348	47	4	892	4	PYGL	14	51378963	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	826999	51378963	55970577	905	84348											
NID2	22795	broad.mit.edu	37	chr14	52520714	52520714	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcaagggggaggacagatCagaatctggaggggagatcc	17	6	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52520714	A	A	52520714	1	1	78	0	1	0	0	0	0	0	0	0	10510	841	29	3		3	NID2	14	52520714	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1141751	52520714	54828826	906	84349											
SIX4	51804	broad.mit.edu	37	chr14	61190693	61190693	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgccgcgccccccgccacttCtcggtgcgcctcctgccctt	9	23	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61190693	G	G	61190693	3	3	78	1	0	0	0	0	1	0	0	0	14462	922	32	4	2257	4	SIX4	14	61190693	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	8669979	61190693	46158847	907	84350											
SNAPC1	6617	broad.mit.edu	37	chr14	62233507	62233507	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcctcatcaaattataacTaccgtttaaacaagtatata	2	8	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62233507	C	C	62233507	1	2	78	0	1	0	0	0	0	0	0	0	14948	1537	53	5		5	SNAPC1	14	62233507	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1042814	62233507	45116033	908	84351											
SYNE2	23224	broad.mit.edu	37	chr14	64600696	64600696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaattttgtatggtcttgGtgttcatttttgttttgtga	9	2	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64600696	T	T	64600696	1	4	78	0	1	0	0	0	0	0	0	0	15565	1276	44	3		3	SYNE2	14	64600696	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2367189	64600696	42748844	909	84352											
SMOC1	64093	broad.mit.edu	37	chr14	70420343	70420343	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcttggcgccttcacttTctgggaaacagttgagtgag	13	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70420343	C	C	70420343	1	2	78	0	1	0	0	0	0	0	0	0	14915	1798	62	5		5	SMOC1	14	70420343	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	5819647	70420343	36929197	910	84353											
ADAM21	8747	broad.mit.edu	37	chr14	70926549	70926549	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattgtcattaagttcaagTtattcttaacatgtttctat	4	6	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70926549	C	C	70926549	1	2	78	0	1	0	0	0	0	0	0	0	243	1740	60	5		5	ADAM21	14	70926549	3'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	506206	70926549	36422991	911	84354											
RGS6	9628	broad.mit.edu	37	chr14	73007325	73007325	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcggccgtgctgcatgggtCctggcgatgtggcctagctg	17	11	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73007325	A	A	73007325	1	1	78	0	1	0	0	0	0	0	0	0	13418	870	30	3		3	RGS6	14	73007325	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2080776	73007325	34342215	912	84355											
RGS6	9628	broad.mit.edu	37	chr14	73029268	73029268	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagagtttccttacgaggaGacttggtcactgtgaaggag	13	7	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73029268	A	A	73029268	1	1	78	0	1	0	0	0	0	0	0	0	13418	957	33	4		4	RGS6	14	73029268	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	21943	73029268	34320272	913	84356											
DPF3	8110	broad.mit.edu	37	chr14	73198507	73198507	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtccccagcaggtgtGggaatacctgtatttcctgg	15	9	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73198507	C	C	73198507	1	2	78	0	1	0	0	0	0	0	0	0	4758	1363	47	4		4	DPF3	14	73198507	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	169239	73198507	34151033	914	84357											
ZFYVE1	53349	broad.mit.edu	37	chr14	73442491	73442491	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaaggaaggaggaagaGggatgtttggtgagttgcac	18	2	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73442491	A	A	73442491	1	1	78	0	1	0	0	0	0	0	0	0	17789	1015	35	4		4	ZFYVE1	14	73442491	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	243984	73442491	33907049	915	84358											
C14orf118	55668	broad.mit.edu	37	chr14	76644549	76644549	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaatcctgtttttattttAgttttgaactttgcagtaag	8	4	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76644549	T	T	76644549	1	4	78	0	1	0	0	0	0	0	0	0	1754	435	15	5		5	C14orf118	14	76644549	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	3202058	76644549	30704991	916	84359											
C14orf4	64207	broad.mit.edu	37	chr14	77492209	77492209	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtagagtgcacggaactgcCatccttgggcgagtgcgctg	16	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77492209	G	G	77492209	3	3	78	1	0	0	0	0	1	0	0	0	1786	594	21	4	467	4	C14orf4	14	77492209	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	847660	77492209	29857331	917	84360											
TSHR	7253	broad.mit.edu	37	chr14	81606238	81606238	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcagggacccggcataagtGacaaaagaccttggtggaag	15	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81606238	T	T	81606238	1	4	78	0	1	0	0	0	0	0	0	0	16747	1305	45	3		3	TSHR	14	81606238	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4114029	81606238	25743302	918	84361											
STON2	85439	broad.mit.edu	37	chr14	81837198	81837198	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccactttgggttctagcttTttgactggataacaacacct	8	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81837198	G	G	81837198	1	3	78	0	1	0	0	0	0	0	0	0	15436	1856	64	5		5	STON2	14	81837198	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	230960	81837198	25512342	919	84362											
BTBD7	55727	broad.mit.edu	37	chr14	93714667	93714667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgacgctgcctctcacCaggagggacttgcaggttat	11	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93714667	A	A	93714667	1	1	78	0	1	0	0	0	0	0	0	0	1556	609	21	2		2	BTBD7	14	93714667	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	11877469	93714667	13634873	920	84363											
KIAA1409	57578	broad.mit.edu	37	chr14	94158302	94158302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacaaagtggtgagttcaCagacgagtttcccttctgag	10	8	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94158302	A	A	94158302	1	1	78	0	1	0	0	0	0	0	0	0	8300	493	17	3		3	KIAA1409	14	94158302	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	443635	94158302	13191238	921	84364											
SERPINA10	51156	broad.mit.edu	37	chr14	94756524	94756524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcaggagcccgggcttgGtgggcttcagggcctgcaag	18	10	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94756524	T	T	94756524	3	4	78	1	0	0	0	0	1	0	0	0	14200	1261	44	3	943	3	SERPINA10	14	94756524	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	598222	94756524	12593016	922	84365											
SERPINA6	866	broad.mit.edu	37	chr14	94776356	94776356	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtgcctaggaagaggaGgagacaggtctgtagggcag	17	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94776356	A	A	94776356	1	1	78	0	1	0	0	0	0	0	0	0	14206	1015	35	4		4	SERPINA6	14	94776356	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	19832	94776356	12573184	923	84366											
DICER1	23405	broad.mit.edu	37	chr14	95581822	95581822	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacttttattgctgcacgaTactgtttttgccttttgatt	7	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95581822	C	C	95581822	1	2	78	0	1	0	0	0	0	0	0	0	4561	1421	49	5		5	DICER1	14	95581822	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	805466	95581822	11767718	924	84367											
WDR20	91833	broad.mit.edu	37	chr14	102676267	102676267	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgacttttttctttttcGtgggaggggtggggtgtaca	15	4	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102676267	T	T	102676267	1	4	78	0	1	0	0	0	0	0	0	0	17407	1160	40	3		3	WDR20	14	102676267	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7094445	102676267	4673273	925	84368											
TRAF3	7187	broad.mit.edu	37	chr14	103369758	103369758	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcgcggggcaagtggctcGgaacacaggtgaggcagggg	21	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103369758	A	A	103369758	3	1	78	1	0	0	0	0	1	0	0	0	16563	1116	39	4	1161	4	TRAF3	14	103369758	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	693491	103369758	3979782	926	84369											
INF2	64423	broad.mit.edu	37	chr14	105242190	105242190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatcaggagctccacccCacgtctttcacccacccgcc	6	21	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105242190	A	A	105242190	1	1	78	0	1	0	0	0	0	0	0	0	7804	609	21	2		2	INF2	14	105242190	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1872432	105242190	2107350	927	84370											
AHNAK2	113146	broad.mit.edu	37	chr14	105416009	105416009	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcttggcgcccttaacatCtgtctgggggcccttgaggt	13	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105416009	A	A	105416009	3	1	78	1	0	0	0	0	1	0	0	0	415	913	32	3	11612	3	AHNAK2	14	105416009	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	173819	105416009	1933531	928	84371											
AHNAK2	113146	broad.mit.edu	37	chr14	105416572	105416572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaccttggggaggtgcCctttgaagccggctccctcg	13	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105416572	A	A	105416572	3	1	78	1	0	0	0	0	1	0	0	0	415	623	22	2	12175	2	AHNAK2	14	105416572	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	563	105416572	1932968	929	84372											
MKRN3	7681	broad.mit.edu	37	chr15	23811302	23811302	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcacgacctttctggtcggAagatggccactgagggtggc	15	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23811302	G	G	23811302	3	3	78	1	0	0	0	0	1	0	0	0	9701	247	9	5	375	5	MKRN3	15	23811302	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08		23811302	78720090	930	84373											
MAGEL2	54551	broad.mit.edu	37	chr15	23889965	23889965	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagacccagggccctggaGgtgctcgggccctcccaggc	16	15	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23889965	T	T	23889965	2	4	78	1	0	0	0	0	0	0	0	1	9281	987	35	2		2	MAGEL2	15	23889965	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	78663	23889965	78641427	931	84374											
MAGEL2	54551	broad.mit.edu	37	chr15	23890368	23890368	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcctttgaggcattcataTtgggctgtgggacccatgga	13	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23890368	A	A	23890368	3	1	78	1	0	0	0	0	1	0	0	0	9281	1493	52	5	1231	5	MAGEL2	15	23890368	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	403	23890368	78641024	932	84375											
SNRPN	6638	broad.mit.edu	37	chr15	25219719	25219719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaataaggatacatccatGgatatggattctcattgcat	8	6	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25219719	T	T	25219719	1	4	78	0	1	0	0	0	0	0	0	0	14984	1363	47	2		2	SNRPN	15	25219719	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1329351	25219719	77311673	933	84376											
GABRB3	2562	broad.mit.edu	37	chr15	27128412	27128412	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcatggctgggcagacaatTcttactccgcgccgcaggcc	13	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27128412	A	A	27128412	1	1	78	0	1	0	0	0	0	0	0	0	6228	1798	62	5		5	GABRB3	15	27128412	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1908693	27128412	75402980	934	84377											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32908666	32908666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggttaggtgtgtaattcaGttcagatggtcgattgctga	13	4	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32908666	T	T	32908666	1	4	78	0	1	0	0	0	0	0	0	0	865	1044	36	3		3	ARHGAP11A	15	32908666	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5780254	32908666	69622726	935	84378											
RYR3	6263	broad.mit.edu	37	chr15	33842510	33842510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagctttctctttccgggCatcaaaggtaaggtgtgata	10	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33842510	A	A	33842510	3	1	78	1	0	0	0	0	1	0	0	0	13881	710	25	3	1003	3	RYR3	15	33842510	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	933844	33842510	68688882	936	84379											
RYR3	6263	broad.mit.edu	37	chr15	33993116	33993116	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcttacgtgcactgcagtcTcagctcagcactgagtgtct	10	13	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33993116	A	A	33993116	1	1	78	0	1	0	0	0	0	0	0	0	13881	1566	54	5		5	RYR3	15	33993116	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	150606	33993116	68538276	937	84380											
RYR3	6263	broad.mit.edu	37	chr15	34042406	34042406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaccatatgacaccttgaCtgccaaggaaaagttcaagg	10	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34042406	T	T	34042406	3	4	78	1	0	0	0	0	1	0	0	0	13881	565	20	4	8544	4	RYR3	15	34042406	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	49290	34042406	68488986	938	84381											
RYR3	6263	broad.mit.edu	37	chr15	34110892	34110892	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacggagaggaggtcagaAccaccagctcacctgcttct	10	14	4	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34110892	C	C	34110892	1	2	78	0	1	0	0	0	0	0	0	0	13881	58	2	5		5	RYR3	15	34110892	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	68486	34110892	68420500	939	84382											
RASGRP1	10125	broad.mit.edu	37	chr15	38800034	38800034	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccagtagcttatggacgtTcactttcccgtcctccagat	9	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38800034	C	C	38800034	3	2	78	1	0	0	0	0	1	0	0	0	13182	1783	62	5	1294	5	RASGRP1	15	38800034	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	4689142	38800034	63731358	940	84383											
RASGRP1	10125	broad.mit.edu	37	chr15	38800056	38800056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcccgtcctccagataGtcaggcatggcttcatacag	8	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38800056	T	T	38800056	3	4	78	1	0	0	0	0	1	0	0	0	13182	1020	36	3	1316	3	RASGRP1	15	38800056	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	22	38800056	63731336	941	84384											
SORD	6652	broad.mit.edu	37	chr15	45360276	45360276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaggcactgggatagatGctagagacacacaaaagata	11	8	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45360276	T	T	45360276	1	4	78	0	1	0	0	0	0	0	0	0	15047	1334	46	3		3	SORD	15	45360276	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6560220	45360276	57171116	942	84385											
SORD	6652	broad.mit.edu	37	chr15	45361251	45361251	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccaggcgggcatctacGtgagtgggctgagggcagct	16	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45361251	T	T	45361251	5	4	78	1	0	0	0	0	0	0	1	0	15047	1159	40	3	813	3	SORD	15	45361251	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08	975	45361251	57170141	943	84386											
SLC12A1	6557	broad.mit.edu	37	chr15	48500073	48500073	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaaacctcttttggggatGaagctcagaaaagactcaga	10	7	3	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48500073	T	T	48500073	4	4	78	1	0	0	0	0	0	1	0	0	14495	1291	45	3	159	3	SLC12A1	15	48500073	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3138822	48500073	54031319	944	84387											
FBN1	2200	broad.mit.edu	37	chr15	48741007	48741007	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgttttaaaaccagtgtGgcaaaggcaataaaagcttc	8	6	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48741007	A	A	48741007	3	1	78	1	0	0	0	0	1	0	0	0	5759	1348	47	4	3070	4	FBN1	15	48741007	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	240934	48741007	53790385	945	84388											
COPS2	9318	broad.mit.edu	37	chr15	49426538	49426538	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctccaaaccaaacttgccTctgataactcccataatcag	3	15	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49426538	C	C	49426538	2	2	78	1	0	0	0	0	0	0	0	1	3765	1565	54	5		5	COPS2	15	49426538	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	685531	49426538	53104854	946	84389											
SPPL2A	84888	broad.mit.edu	37	chr15	51014416	51014416	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccttaaaaacaaaacaaaAcattattttcttaaaacaat	2	7	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51014416	T	T	51014416	1	4	78	0	1	0	0	0	0	0	0	0	15206	58	2	5		5	SPPL2A	15	51014416	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1587878	51014416	51516976	947	84390											
ONECUT1	3175	broad.mit.edu	37	chr15	53080954	53080954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaccttatctcccgcgcGcccagctccttggccggctc	10	18	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53080954	T	T	53080954	1	4	78	0	1	0	0	0	0	0	0	0	10962	1102	38	3		3	ONECUT1	15	53080954	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2066538	53080954	49450438	948	84391											
VPS13C	54832	broad.mit.edu	37	chr15	62165362	62165362	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcctagactcataagCagcattctaagtttcacaca	6	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62165362	A	A	62165362	1	1	78	0	1	0	0	0	0	0	0	0	17318	725	25	3		3	VPS13C	15	62165362	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	9084408	62165362	40366030	949	84392											
TLN2	83660	broad.mit.edu	37	chr15	62948149	62948150	+	Missense_Mutation	DNP	GG	AT	AT													ttgttgtgttgcagtaaattGgctggatcacagccgaacat							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	62948150	AT	AT	62948149	3	1	78	1	0	0	0	0	1	0	0	0	16071	1357	47	4	542	4	TLN2	15	62948149	Missense_Mutation	DNP	GG	TCGA-17-Z049-01A-01W-0746-08	782787	62948149	39583243	950	84393											
TLN2	83660	broad.mit.edu	37	chr15	62989969	62989969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccggccgtgatgcgctcgGgctccagcgggcctgagacc	16	15	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62989969	T	T	62989969	3	4	78	1	0	0	0	0	1	0	0	0	16071	1232	43	2	1421	2	TLN2	15	62989969	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	41820	62989969	39541423	951	84394											
SNX1	6642	broad.mit.edu	37	chr15	64423929	64423929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcaaagagtctagccatGcttgggagctctgaggacaa	12	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64423929	T	T	64423929	3	4	78	1	0	0	0	0	1	0	0	0	14994	1319	46	3	1101	3	SNX1	15	64423929	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1433960	64423929	38107463	952	84395											
IGDCC4	57722	broad.mit.edu	37	chr15	65684080	65684080	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctaaaagaggacccctgatCctaggagaatgggtttgggc	14	8	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65684080	T	T	65684080	1	4	78	0	1	0	0	0	0	0	0	0	7639	870	30	4		4	IGDCC4	15	65684080	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1260151	65684080	36847312	953	84396											
NOX5	79400	broad.mit.edu	37	chr15	69315192	69315192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcttgttcctggatgagcCcacaactggactggactcaa	9	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69315192	T	T	69315192	1	4	78	0	1	0	0	0	0	0	0	0	10654	638	22	4		4	NOX5	15	69315192	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3631112	69315192	33216200	954	84397											
NOX5	79400	broad.mit.edu	37	chr15	69329231	69329231	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagcttcccagccccaacatCttacccaactccatccccgg	4	20	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69329231	T	T	69329231	1	4	78	0	1	0	0	0	0	0	0	0	10654	928	32	4		4	NOX5	15	69329231	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	14039	69329231	33202161	955	84398											
TLE3	7090	broad.mit.edu	37	chr15	70342448	70342448	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcttgtttagtagatgacCtcataaactgtggccttctt	8	8	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70342448	T	T	70342448	2	4	78	1	0	0	0	0	0	0	0	1	16063	680	24	4		4	TLE3	15	70342448	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1013217	70342448	32188944	956	84399											
NEO1	4756	broad.mit.edu	37	chr15	73415160	73415160	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtattaactcattatcagGactgatggttttatgtttat	8	4	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73415160	T	T	73415160	1	4	78	0	1	0	0	0	0	0	0	0	10431	1189	41	3		3	NEO1	15	73415160	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3072712	73415160	29116232	957	84400											
NEO1	4756	broad.mit.edu	37	chr15	73468860	73468860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgaagtgggtcaaaaatGgggatatggttatcccaagt	13	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73468860	T	T	73468860	3	4	78	1	0	0	0	0	1	0	0	0	10431	1348	47	2	1154	2	NEO1	15	73468860	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	53700	73468860	29062532	958	84401											
TBC1D21	161514	broad.mit.edu	37	chr15	74181397	74181397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtgcacctcccacctGcctcctccctaggttcctca	6	19	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74181397	T	T	74181397	1	4	78	0	1	0	0	0	0	0	0	0	15729	1334	46	3		3	TBC1D21	15	74181397	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	712537	74181397	28349995	959	84402											
PML	5371	broad.mit.edu	37	chr15	74337262	74337262	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctactttgaaggcctgttGgagggtccggcgctggcacg	15	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74337262	C	C	74337262	3	2	78	1	0	0	0	0	1	0	0	0	12230	1339	47	4	3613	4	PML	15	74337262	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	155865	74337262	28194130	960	84403											
CIB2	10518	broad.mit.edu	37	chr15	78403678	78403678	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccctaagccccagcagccCggtgctgtcctgcctaggcc	10	18	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78403678	T	T	78403678	1	4	78	0	1	0	0	0	0	0	0	0	3452	667	23	4		4	CIB2	15	78403678	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4066416	78403678	24127714	961	84404											
RASGRF1	5923	broad.mit.edu	37	chr15	79292010	79292010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcagagcaagtccccgGgaccatggctgctatcacct	10	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79292010	T	T	79292010	1	4	78	0	1	0	0	0	0	0	0	0	13180	1247	43	2		2	RASGRF1	15	79292010	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	888332	79292010	23239382	962	84405											
AP3B2	8120	broad.mit.edu	37	chr15	83360376	83360376	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaattaaaataAtttcctaagacgctaaatcc	2	6	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83360376	G	G	83360376	1	3	78	0	1	0	0	0	0	0	0	0	747	116	4	5		5	AP3B2	15	83360376	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	4068366	83360376	19171016	963	84406											
NTRK3	4916	broad.mit.edu	37	chr15	88576116	88576116	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgtggcagttgtgtccCtgacggaagtactgggggtt	17	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88576116	T	T	88576116	2	4	78	1	0	0	0	0	0	0	0	1	10803	680	24	4		4	NTRK3	15	88576116	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5215740	88576116	13955276	964	84407											
ACAN	176	broad.mit.edu	37	chr15	89385034	89385034	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatgagtttcctggtgtgagGacgtatggcatccgagacac	14	8	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89385034	A	A	89385034	2	1	78	1	0	0	0	0	0	0	0	1	117	1165	41	4		4	ACAN	15	89385034	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	808918	89385034	13146358	965	84408											
POLG	5428	broad.mit.edu	37	chr15	89870507	89870507	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctctgccaggtaacgctCccagttctggttgacaggca	11	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89870507	A	A	89870507	4	1	78	1	0	0	0	0	0	1	0	0	12295	864	30	3	2463	3	POLG	15	89870507	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	485473	89870507	12660885	966	84409											
ARRDC4	91947	broad.mit.edu	37	chr15	98509011	98509011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtttacactgaatagtccCtaaatagacttactcttttt	4	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98509011	T	T	98509011	1	4	78	0	1	0	0	0	0	0	0	0	989	696	24	4		4	ARRDC4	15	98509011	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	8638504	98509011	4022381	967	84410											
IGF1R	3480	broad.mit.edu	37	chr15	99228799	99228799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccttcggtatcttcccaGtggctctttccacgactggc	9	15	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99228799	T	T	99228799	1	4	78	0	1	0	0	0	0	0	0	0	7641	1044	36	3		3	IGF1R	15	99228799	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	719788	99228799	3302593	968	84411											
LRRK1	79705	broad.mit.edu	37	chr15	101605612	101605612	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtggctgtgtttcccgTggtgcggggcaccccaaagg	16	11	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101605612	C	C	101605612	3	2	78	1	0	0	0	0	1	0	0	0	9119	1696	59	5	5092	5	LRRK1	15	101605612	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	2376813	101605612	925780	969	84412											
BAIAP3	8938	broad.mit.edu	37	chr16	1394319	1394319	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acattgctgcggccctgaagGtgtgttccaaagcccagtgg	13	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1394319	A	A	1394319	5	1	78	1	0	0	0	0	0	0	1	0	1309	1275	44	4	1774	4	BAIAP3	16	1394319	Splice_Site	SNP	G	TCGA-17-Z049-01A-01W-0746-08		1394319	88960434	970	84413											
CREBBP	1387	broad.mit.edu	37	chr16	3790602	3790602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaacagcactgctgagaCagtgactgagactagagaat	10	9	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3790602	A	A	3790602	1	1	78	0	1	0	0	0	0	0	0	0	3893	493	17	3		3	CREBBP	16	3790602	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2396283	3790602	86564151	971	84414											
SEPT12	124404	broad.mit.edu	37	chr16	4834196	4834196	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccggttggcccgggacctgTgggtcaccccggtactttcc	13	16	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4834196	A	A	4834196	1	1	78	0	1	0	0	0	0	0	0	0	14175	1711	59	5		5	SEPT12	16	4834196	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1043594	4834196	85520557	972	84415											
GRIN2A	2903	broad.mit.edu	37	chr16	9943861	9943861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtgctttcttccgccGctgatttctggagaggcaaa	11	11	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9943861	T	T	9943861	1	4	78	0	1	0	0	0	0	0	0	0	6845	1102	38	3		3	GRIN2A	16	9943861	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5109665	9943861	80410892	973	84416											
CPPED1	55313	broad.mit.edu	37	chr16	12798851	12798851	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagtgggatggccctgtcCactgccctaagcactcgctt	10	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12798851	A	A	12798851	2	1	78	1	0	0	0	0	0	0	0	1	3854	581	21	2		2	CPPED1	16	12798851	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2854990	12798851	77555902	974	84417											
PARN	5073	broad.mit.edu	37	chr16	14693769	14693769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcacttaccgaattagCaatggcgtgaatgactctag	10	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14693769	A	A	14693769	3	1	78	1	0	0	0	0	1	0	0	0	11547	710	25	3	1139	3	PARN	16	14693769	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1894918	14693769	75660984	975	84418											
NDE1	54820	broad.mit.edu	37	chr16	15785139	15785139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgcccattgctcaccgagGacccagctcaagtttaaaca	7	15	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15785139	T	T	15785139	3	4	78	1	0	0	0	0	1	0	0	0	10338	1174	41	3	680	3	NDE1	16	15785139	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1091370	15785139	74569614	976	84419											
ACSM1	116285	broad.mit.edu	37	chr16	20648732	20648732	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccttccccatgaaaccCggcttgatcttcattcccca	7	16	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20648732	A	A	20648732	2	1	78	1	0	0	0	0	0	0	0	1	182	639	23	1		1	ACSM1	16	20648732	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4863593	20648732	69706021	977	84420											
ERI2	112479	broad.mit.edu	37	chr16	20871695	20871695	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcaaaaaactccttcctgCaacagaaaggaaaaggacaa	6	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20871695	T	T	20871695	1	4	78	0	1	0	0	0	0	0	0	0	5270	725	25	4		4	ERI2	16	20871695	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	222963	20871695	69483058	978	84421											
DNAH3	55567	broad.mit.edu	37	chr16	20994269	20994269	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtggacccaaggaggcaGgcgggtattcccaaggattc	15	10	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20994269	C	C	20994269	1	2	78	0	1	0	0	0	0	0	0	0	4643	1015	35	4		4	DNAH3	16	20994269	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	122574	20994269	69360484	979	84422											
PDZD9	255762	broad.mit.edu	37	chr16	21999819	21999819	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagtgtcaccagtcctcctGtcatgatccttatcatttga	6	12	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21999819	C	C	21999819	1	2	78	0	1	0	0	0	0	0	0	0	11800	1392	48	4		4	PDZD9	16	21999819	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1005550	21999819	68354934	980	84423											
SCNN1G	6340	broad.mit.edu	37	chr16	23197657	23197657	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtgacgggccctcaggCgccgaccattaaagagctga	13	14	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23197657	T	T	23197657	3	4	78	1	0	0	0	0	1	0	0	0	14043	768	27	4	67	4	SCNN1G	16	23197657	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1197838	23197657	67157096	981	84424											
C16orf82	162083	broad.mit.edu	37	chr16	27078670	27078670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaaggctcaacacccaGgcggccagtaaccaaaccag	9	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27078670	T	T	27078670	3	4	78	1	0	0	0	0	1	0	0	0	1852	991	35	2	356	2	C16orf82	16	27078670	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3881013	27078670	63276083	982	84425											
MMP2	4313	broad.mit.edu	37	chr16	55517110	55517110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacgagtctccttgaccCatgcattctctccactcagg	8	15	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55517110	A	A	55517110	1	1	78	0	1	0	0	0	0	0	0	0	9751	609	21	2		2	MMP2	16	55517110	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	28438440	55517110	34837643	983	84426											
CES7	221223	broad.mit.edu	37	chr16	55907815	55907815	+	Frame_Shift_Del	DEL	G	-	-													ctgcgggttcgtaaatcgcaGggatcccagcgggggagcag							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55907815	-	-	55907815	7	5	78	1	0	1	0	1	0	0	0	0	3302	991	35	0	1567	0	CES7	16	55907815	Frame_Shift_Del	DEL	G	TCGA-17-Z049-01A-01W-0746-08	390705	55907815	34446938	984	84427											
CIAPIN1	57019	broad.mit.edu	37	chr16	57468158	57468158	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaaaaggattagttcacCctcctctgtaaaatggttta	6	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57468158	A	A	57468158	1	1	78	0	1	0	0	0	0	0	0	0	3450	638	22	2		2	CIAPIN1	16	57468158	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1560343	57468158	32886595	985	84428											
NDRG4	65009	broad.mit.edu	37	chr16	58545443	58545443	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagagcagcgaggggcTgggccaggtcaaccacacca	14	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58545443	A	A	58545443	3	1	78	1	0	0	0	0	1	0	0	0	10349	1580	55	5	1201	5	NDRG4	16	58545443	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1077285	58545443	31809310	986	84429											
CDH11	1009	broad.mit.edu	37	chr16	64982488	64982488	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaagagtattggtcctaTactaacttaatgggaagtct	10	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64982488	A	A	64982488	1	1	78	0	1	0	0	0	0	0	0	0	3127	1421	49	5		5	CDH11	16	64982488	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	6437045	64982488	25372265	987	84430											
SLC9A5	6553	broad.mit.edu	37	chr16	67298893	67298893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaccagatgacagggttGgggtgggaagccggggccag	18	11	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67298893	T	T	67298893	1	4	78	0	1	0	0	0	0	0	0	0	14831	1363	47	2		2	SLC9A5	16	67298893	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2316405	67298893	23055860	988	84431											
MTSS1L	92154	broad.mit.edu	37	chr16	70698083	70698083	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggatggggatggggccagCgctggacagggcgcggcgca	21	11	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70698083	T	T	70698083	3	4	78	1	0	0	0	0	1	0	0	0	10057	768	27	4	506	4	MTSS1L	16	70698083	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3399190	70698083	19656670	989	84432											
HYDIN	54768	broad.mit.edu	37	chr16	70926379	70926379	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccctttttgggttggactGagatcatggaatttatatta	9	5	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70926379	A	A	70926379	3	1	78	1	0	0	0	0	1	0	0	0	7537	1294	45	4	6187	4	HYDIN	16	70926379	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	228296	70926379	19428374	990	84433											
HYDIN	54768	broad.mit.edu	37	chr16	71007911	71007911	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagacagatgtgaactgttgGccctccaaccacctagagag	11	11	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71007911	C	C	71007911	3	2	78	1	0	0	0	0	1	0	0	0	7537	1203	42	4	10527	4	HYDIN	16	71007911	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	81532	71007911	19346842	991	84434											
RFWD3	55159	broad.mit.edu	37	chr16	74683183	74683183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagctagcaggagagagCctgactcactacagcttccc	11	12	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74683183	A	A	74683183	1	1	78	0	1	0	0	0	0	0	0	0	13369	754	26	3		3	RFWD3	16	74683183	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3675272	74683183	15671570	992	84435											
CHST6	4166	broad.mit.edu	37	chr16	75513119	75513119	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcgcagcacggcccgcgggTcgcgcaccaggtgcacgatg	16	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75513119	A	A	75513119	3	1	78	1	0	0	0	0	1	0	0	0	3439	1667	58	5	583	5	CHST6	16	75513119	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	829936	75513119	14841634	993	84436											
BCMO1	53630	broad.mit.edu	37	chr16	81303613	81303613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggggggcacttttgcctGtctggtgttgtggagcacac	15	8	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81303613	T	T	81303613	1	4	78	0	1	0	0	0	0	0	0	0	1389	1392	48	3		3	BCMO1	16	81303613	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5790494	81303613	9051140	994	84437											
BCMO1	53630	broad.mit.edu	37	chr16	81324046	81324046	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttacggaattggcccgtgCctctgttgatgtcgatatgc	11	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81324046	G	G	81324046	3	3	78	1	0	0	0	0	1	0	0	0	1389	739	26	4	1550	4	BCMO1	16	81324046	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	20433	81324046	9030707	995	84438											
ATP2C2	9914	broad.mit.edu	37	chr16	84497390	84497390	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctcgatctggttgtgactGtggcccctgccgtgtctcct	11	13	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84497390	C	C	84497390	1	2	78	0	1	0	0	0	0	0	0	0	1148	1392	48	4		4	ATP2C2	16	84497390	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3173344	84497390	5857363	996	84439											
GALNS	2588	broad.mit.edu	37	chr16	88893064	88893064	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgattagcagctctgggcttCactacttggatcgggggaag	14	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88893064	T	T	88893064	1	4	78	0	1	0	0	0	0	0	0	0	6268	841	29	4		4	GALNS	16	88893064	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4395674	88893064	1461689	997	84440											
OR3A1	4994	broad.mit.edu	37	chr17	3195487	3195487	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgtaggtgaggggccgGcagatggccaggaatcggtc	19	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3195487	T	T	3195487	4	4	78	1	0	0	0	0	0	1	0	0	11131	1195	42	3	561	3	OR3A1	17	3195487	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08		3195487	77999723	998	84441											
CAMKK1	84254	broad.mit.edu	37	chr17	3773091	3773091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaagacccccagttcccCgaccttgatgtctggcaccc	8	19	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3773091	A	A	3773091	1	1	78	0	1	0	0	0	0	0	0	0	2632	667	23	1		1	CAMKK1	17	3773091	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	577604	3773091	77422119	999	84442											
ZZEF1	23140	broad.mit.edu	37	chr17	4045901	4045901	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagctcccggaactgctccaGagtgacagactcttcgccgc	10	16	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4045901	C	C	4045901	3	2	78	1	0	0	0	0	1	0	0	0	18384	933	33	4	8816	4	ZZEF1	17	4045901	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	272810	4045901	77149309	1000	84443											
ZNF232	7775	broad.mit.edu	37	chr17	5012586	5012586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactaactgctctacctggcCcaagagaggtttgaacttgg	10	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5012586	A	A	5012586	1	1	78	0	1	0	0	0	0	0	0	0	17911	638	22	2		2	ZNF232	17	5012586	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	966685	5012586	76182624	1001	84444											
TP53	7157	broad.mit.edu	37	chr17	7577531	7577532	+	Missense_Mutation	DNP	GG	AA	AA													agtgtgatgatggtgaggatGggcctccggttcatgccgcc					rs67026029		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7577532	AA	AA	7577531	3	1	78	1	0	0	0	0	1	0	0	0	16505	1335	47	4	540	4	TP53	17	7577531	Missense_Mutation	DNP	GG	TCGA-17-Z049-01A-01W-0746-08	2564945	7577531	73617679	1002	84445											
PER1	5187	broad.mit.edu	37	chr17	8045883	8045883	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccatcccagtggccttaGgaagctccgccaagacgggg	13	13	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8045883	A	A	8045883	1	1	78	0	1	0	0	0	0	0	0	0	11823	1015	35	4		4	PER1	17	8045883	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	468352	8045883	73149327	1003	84446											
MYH10	4628	broad.mit.edu	37	chr17	8393742	8393742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgcgccttcatggcctgCatgttgacctccagacgaag	10	13	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8393742	A	A	8393742	3	1	78	1	0	0	0	0	1	0	0	0	10124	710	25	3	1259	3	MYH10	17	8393742	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	347859	8393742	72801468	1004	84447											
MFSD6L	162387	broad.mit.edu	37	chr17	8702465	8702465	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggctctgtcaggcctgggCcgacggagggcggagctggg	21	11	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8702465	A	A	8702465	1	1	78	0	1	0	0	0	0	0	0	0	9629	754	26	3		3	MFSD6L	17	8702465	5'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	308723	8702465	72492745	1005	84448											
DHRS7C	201140	broad.mit.edu	37	chr17	9694337	9694337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagaacacaggatcgatcCcctcccaccgagcaggtttg	11	13	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9694337	A	A	9694337	1	1	78	0	1	0	0	0	0	0	0	0	4537	638	22	2		2	DHRS7C	17	9694337	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	991872	9694337	71500873	1006	84449											
MYH2	4620	broad.mit.edu	37	chr17	10428440	10428440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctttatgaagtttttcTgcacagcaataattttgtgc	7	6	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10428440	C	C	10428440	1	2	78	0	1	0	0	0	0	0	0	0	10129	1595	55	5		5	MYH2	17	10428440	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	734103	10428440	70766770	1007	84450											
TEKT3	64518	broad.mit.edu	37	chr17	15211785	15211785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttggtgcaaccgtcacCgccatccatctgcaggactg	10	14	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15211785	A	A	15211785	1	1	78	0	1	0	0	0	0	0	0	0	15876	667	23	1		1	TEKT3	17	15211785	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4783345	15211785	65983425	1008	84451											
MYO15A	51168	broad.mit.edu	37	chr17	18058425	18058425	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacctggcctcccatagcCcagaaccagctggacacaca	8	17	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18058425	A	A	18058425	2	1	78	1	0	0	0	0	0	0	0	1	10157	637	22	2		2	MYO15A	17	18058425	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2846640	18058425	63136785	1009	84452											
LGALS9C	654346	broad.mit.edu	37	chr17	18392259	18392259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttgttttaacagaatcCccgcgcagtccccgttcagc	7	15	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18392259	A	A	18392259	3	1	78	1	0	0	0	0	1	0	0	0	8822	623	22	2	467	2	LGALS9C	17	18392259	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	333834	18392259	62802951	1010	84453											
WSB1	26118	broad.mit.edu	37	chr17	25630530	25630530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctggagtcttgcttttgGgtcatcagttccagaaaaac	10	8	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25630530	T	T	25630530	3	4	78	1	0	0	0	0	1	0	0	0	17531	1232	43	2	357	2	WSB1	17	25630530	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7238271	25630530	55564680	1011	84454											
SGK494	124923	broad.mit.edu	37	chr17	26941253	26941253	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcctctccctgatgctgCgtgacacgagccccgcctct	8	17	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26941253	T	T	26941253	1	4	78	0	1	0	0	0	0	0	0	0	14326	783	27	4		4	SGK494	17	26941253	5'Flank	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1310723	26941253	54253957	1012	84455											
NEK8	284086	broad.mit.edu	37	chr17	27065353	27065353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacacgcacttaatgaatGcttctgtctactagttatcg	6	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27065353	A	A	27065353	1	1	78	0	1	0	0	0	0	0	0	0	10425	1334	46	4		4	NEK8	17	27065353	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	124100	27065353	54129857	1013	84456											
UNC45B	146862	broad.mit.edu	37	chr17	33495200	33495200	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggactgaaaggtgtgatggaGatgatggtggcactatgtgg	18	3	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33495200	T	T	33495200	3	4	78	1	0	0	0	0	1	0	0	0	17115	933	33	3	1306	3	UNC45B	17	33495200	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6429847	33495200	47700010	1014	84457											
UNC45B	146862	broad.mit.edu	37	chr17	33501226	33501226	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgattggcctggcacccagGaccctcccacattgccatct	8	18	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33501226	T	T	33501226	1	4	78	0	1	0	0	0	0	0	0	0	17115	1189	41	3		3	UNC45B	17	33501226	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6026	33501226	47693984	1015	84458											
FBXO47	494188	broad.mit.edu	37	chr17	37101330	37101330	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcacttcgatgtgtccaatGatcaaggaggacattcctac	8	10	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37101330	T	T	37101330	3	4	78	1	0	0	0	0	1	0	0	0	5813	1290	45	3	702	3	FBXO47	17	37101330	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3600104	37101330	44093880	1016	84459											
STAC2	342667	broad.mit.edu	37	chr17	37369237	37369237	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagggcctgggctgggcctCaggcactcacctggttctcc	13	14	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37369237	A	A	37369237	1	1	78	0	1	0	0	0	0	0	0	0	15358	841	29	3		3	STAC2	17	37369237	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	267907	37369237	43825973	1017	84460											
PPP1R1B	84152	broad.mit.edu	37	chr17	37792213	37792213	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgttttgtgctcttcccctCgcctgctagggctgcggctt	11	14	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37792213	G	G	37792213	1	3	78	0	1	0	0	0	0	0	0	0	12469	899	31	4		4	PPP1R1B	17	37792213	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	422976	37792213	43402997	1018	84461											
ERBB2	2064	broad.mit.edu	37	chr17	37879576	37879576	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggcttccgcccccagccctCtgacgtccatcatctctgcg	8	19	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37879576	G	G	37879576	3	3	78	1	0	0	0	0	1	0	0	0	5248	912	32	4	2017	4	ERBB2	17	37879576	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	87363	37879576	43315634	1019	84462											
KRT23	25984	broad.mit.edu	37	chr17	39080837	39080837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgaactaacttccttcGcttgcttgtaaatcctctgc	7	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39080837	T	T	39080837	1	4	78	0	1	0	0	0	0	0	0	0	8531	1102	38	3		3	KRT23	17	39080837	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1201261	39080837	42114373	1020	84463											
KRTAP4-3	85290	broad.mit.edu	37	chr17	39324424	39324424	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacagcaggagctgaccaTggcgtcagagggtggaggtt	17	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39324424	C	C	39324424	3	2	78	1	0	0	0	0	1	0	0	0	8624	1478	51	5	590	5	KRTAP4-3	17	39324424	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	243587	39324424	41870786	1021	84464											
RAB5C	5878	broad.mit.edu	37	chr17	40278776	40278776	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggagaagcaactgacctaTtgccatgaagatttcgttca	10	8	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40278776	G	G	40278776	3	3	78	1	0	0	0	0	1	0	0	0	13058	1493	52	5	126	5	RAB5C	17	40278776	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	954352	40278776	40916434	1022	84465											
HCRT	3060	broad.mit.edu	37	chr17	40336456	40336456	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcttttgacgacagcagtCgggcaggggctgtgcagccg	16	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40336456	T	T	40336456	3	4	78	1	0	0	0	0	1	0	0	0	7067	884	31	4	287	4	HCRT	17	40336456	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	57680	40336456	40858754	1023	84466											
STAT5A	6776	broad.mit.edu	37	chr17	40460390	40460390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccggctgactcccccGggctcttccccagcccatag	9	21	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40460390	T	T	40460390	1	4	78	0	1	0	0	0	0	0	0	0	15386	1131	39	1		1	STAT5A	17	40460390	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	123934	40460390	40734820	1024	84467											
EZH1	2145	broad.mit.edu	37	chr17	40865549	40865549	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaccatataataagtatgaTcatataacaatgagagctgc	7	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40865549	C	C	40865549	1	2	78	0	1	0	0	0	0	0	0	0	5376	1450	50	5		5	EZH1	17	40865549	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	405159	40865549	40329661	1025	84468											
NBR1	4077	broad.mit.edu	37	chr17	41341830	41341830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagtgtaggtaagcagttGcttgggagtagctagctagt	14	6	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41341830	T	T	41341830	1	4	78	0	1	0	0	0	0	0	0	0	10295	1334	46	3		3	NBR1	17	41341830	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	476281	41341830	39853380	1026	84469											
DUSP3	1845	broad.mit.edu	37	chr17	41846945	41846945	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcccacggcctcccccaCggacctctcgagcagaggtg	11	17	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41846945	T	T	41846945	1	4	78	0	1	0	0	0	0	0	0	0	4866	551	19	4		4	DUSP3	17	41846945	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	505115	41846945	39348265	1027	84470											
FZD2	2535	broad.mit.edu	37	chr17	42635672	42635672	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccactgcccgcgcgtcctcAaggtgccatcctatctcagc	8	18	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42635672	T	T	42635672	4	4	78	1	0	0	0	0	0	1	0	0	6190	131	5	5	618	5	FZD2	17	42635672	Nonsense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	788727	42635672	38559538	1028	84471											
FZD2	2535	broad.mit.edu	37	chr17	42636025	42636025	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acggtggtgcagggcaccaaGaaggagggctgcaccatcct	15	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42636025	A	A	42636025	2	1	78	1	0	0	0	0	0	0	0	1	6190	933	33	4		4	FZD2	17	42636025	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	353	42636025	38559185	1029	84472											
EFTUD2	9343	broad.mit.edu	37	chr17	42941240	42941240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcacaatggtcaaaaagcTcaaagtgcggggactgattg	11	7	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42941240	A	A	42941240	1	1	78	0	1	0	0	0	0	0	0	0	5001	1566	54	5		5	EFTUD2	17	42941240	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	305215	42941240	38253970	1030	84473											
ARHGAP27	201176	broad.mit.edu	37	chr17	43481636	43481636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagggggtgatgcctaccCtcacagcagctgtggcagga	16	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43481636	A	A	43481636	3	1	78	1	0	0	0	0	1	0	0	0	878	695	24	2	1239	2	ARHGAP27	17	43481636	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	540396	43481636	37713574	1031	84474											
COPZ2	51226	broad.mit.edu	37	chr17	46103847	46103847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagactgaagaacctgggGtggggtgggggaggttgaga	22	4	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46103847	T	T	46103847	1	4	78	0	1	0	0	0	0	0	0	0	3774	1276	44	3		3	COPZ2	17	46103847	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2622211	46103847	35091363	1032	84475											
IGF2BP1	10642	broad.mit.edu	37	chr17	47115536	47115536	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactctgtccccagagccatCatgaagctgaatggccacca	8	15	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47115536	T	T	47115536	2	4	78	1	0	0	0	0	0	0	0	1	7643	816	29	4		4	IGF2BP1	17	47115536	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1011689	47115536	34079674	1033	84476											
PCTP	58488	broad.mit.edu	37	chr17	53850947	53850947	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtatggagacagggcacgTcagtgaactagtggtagaaa	15	5	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53850947	C	C	53850947	1	2	78	0	1	0	0	0	0	0	0	0	11701	1682	58	5		5	PCTP	17	53850947	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	6735411	53850947	27344263	1034	84477											
USP32	84669	broad.mit.edu	37	chr17	58270219	58270219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttacctataccatgggcaCcaagcacaggagttcccatc	7	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58270219	A	A	58270219	3	1	78	1	0	0	0	0	1	0	0	0	17190	508	18	3	1335	3	USP32	17	58270219	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4419272	58270219	22924991	1035	84478											
PPM1D	8493	broad.mit.edu	37	chr17	58678173	58678173	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagaagggtttcacctcgtCcgagccggctaaggtttgcg	14	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58678173	T	T	58678173	3	4	78	1	0	0	0	0	1	0	0	0	12438	855	30	4	400	4	PPM1D	17	58678173	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	407954	58678173	22517037	1036	84479											
TBX2	6909	broad.mit.edu	37	chr17	59479175	59479175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgcgctggatggtggcgGgcaaggccgaccctgagatg	17	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59479175	T	T	59479175	3	4	78	1	0	0	0	0	1	0	0	0	15777	1232	43	2	532	2	TBX2	17	59479175	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	801002	59479175	21716035	1037	84480											
MAP3K3	4215	broad.mit.edu	37	chr17	61768535	61768535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcatcgtgcagtactatgGctgtctgcgggaccgcgctg	15	12	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61768535	T	T	61768535	3	4	78	1	0	0	0	0	1	0	0	0	9343	1203	42	3	1433	3	MAP3K3	17	61768535	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2289360	61768535	19426675	1038	84481											
ERN1	2081	broad.mit.edu	37	chr17	62135165	62135165	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattgttgagctttaccagGggataggtgatgatgaaggc	15	4	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62135165	A	A	62135165	2	1	78	1	0	0	0	0	0	0	0	1	5279	1219	43	4		4	ERN1	17	62135165	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	366630	62135165	19060045	1039	84482											
TEX2	55852	broad.mit.edu	37	chr17	62265924	62265924	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggtggctcacgcctgtaatCccagcactttgagaggccga	12	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62265924	G	G	62265924	1	3	78	0	1	0	0	0	0	0	0	0	15903	870	30	4		4	TEX2	17	62265924	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	130759	62265924	18929286	1040	84483											
AXIN2	8313	broad.mit.edu	37	chr17	63534540	63534540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggccggagcttcccgcaCcaggcgctgtgcaccgcaaa	12	16	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63534540	A	A	63534540	1	1	78	0	1	0	0	0	0	0	0	0	1242	522	18	3		3	AXIN2	17	63534540	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1268616	63534540	17660670	1041	84484											
CCDC46	201134	broad.mit.edu	37	chr17	63746823	63746823	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtgtattccttctcaatcTgcttcagcttgctgttggcc	9	11	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63746823	A	A	63746823	3	1	78	1	0	0	0	0	1	0	0	0	2845	1580	55	5	477	5	CCDC46	17	63746823	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	212283	63746823	17448387	1042	84485											
KPNA2	3838	broad.mit.edu	37	chr17	66039579	66039579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtaatcccagcactttgGgagaccaaggcaggtggatc	13	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66039579	T	T	66039579	1	4	78	0	1	0	0	0	0	0	0	0	8501	1247	43	2		2	KPNA2	17	66039579	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2292756	66039579	15155631	1043	84486											
ABCA5	23461	broad.mit.edu	37	chr17	67250089	67250089	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtgtgatccctgatgtTgttttctctagaatagttac	10	7	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67250089	C	C	67250089	1	2	78	0	1	0	0	0	0	0	0	0	35	1827	63	5		5	ABCA5	17	67250089	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1210510	67250089	13945121	1044	84487											
RPL38	6169	broad.mit.edu	37	chr17	72200013	72200013	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggaaaacggggttcgctGccagcccccgcgccgtgtta	15	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72200013	A	A	72200013	1	1	78	0	1	0	0	0	0	0	0	0	13702	1334	46	4		4	RPL38	17	72200013	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4949924	72200013	8995197	1045	84488											
KIF19	124602	broad.mit.edu	37	chr17	72322560	72322560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccctcctccccaccccGctccgtggtctacttcagtc	6	20	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72322560	T	T	72322560	1	4	78	0	1	0	0	0	0	0	0	0	8352	1102	38	3		3	KIF19	17	72322560	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	122547	72322560	8872650	1046	84489											
RNF157	114804	broad.mit.edu	37	chr17	74162444	74162444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcacagtcacaaacaccCacaaagaaggcatgttgttc	7	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74162444	A	A	74162444	1	1	78	0	1	0	0	0	0	0	0	0	13565	609	21	2		2	RNF157	17	74162444	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1839884	74162444	7032766	1047	84490											
USP36	57602	broad.mit.edu	37	chr17	76802278	76802278	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtggaggcaacgacggggtGagaggttttcatggggtggg	21	4	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76802278	A	A	76802278	3	1	78	1	0	0	0	0	1	0	0	0	17194	1290	45	4	1219	4	USP36	17	76802278	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2639834	76802278	4392932	1048	84491											
RNF213	57674	broad.mit.edu	37	chr17	78320202	78320202	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtcgttgatgctggccatCggggtgtgttaccatgcctc	14	10	0	1	rs143580800	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78320202	T	T	78320202	2	4	78	1	0	0	0	0	0	0	0	1	13588	874	31	4		4	RNF213	17	78320202	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1517924	78320202	2875008	1049	84492											
RPTOR	57521	broad.mit.edu	37	chr17	78811858	78811858	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccacttctctgggcacctgGactgcaaagcccccagactg	10	16	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78811858	C	C	78811858	1	2	78	0	1	0	0	0	0	0	0	0	13776	1189	41	4		4	RPTOR	17	78811858	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	491656	78811858	2383352	1050	84493											
DLGAP1	9229	broad.mit.edu	37	chr18	3597383	3597383	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgagcatccctgactctgAgactgtggggtagctggttg	14	9	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3597383	G	G	3597383	1	3	78	0	1	0	0	0	0	0	0	0	4599	319	11	5		5	DLGAP1	18	3597383	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08		3597383	74479865	1051	84494											
PPP4R1	9989	broad.mit.edu	37	chr18	9588969	9588969	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcaaaatataaaggacttGagacaacatcctttaattct	4	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9588969	C	C	9588969	1	2	78	0	1	0	0	0	0	0	0	0	12504	1305	45	4		4	PPP4R1	18	9588969	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5991586	9588969	68488279	1052	84495											
FAM38B	63895	broad.mit.edu	37	chr18	10681856	10681856	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcccatttatgtaggctAtgtttatcccatgatacatg	7	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10681856	T	T	10681856	1	4	78	0	1	0	0	0	0	0	0	0	5606	464	16	5		5	FAM38B	18	10681856	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1092887	10681856	67395392	1053	84496											
ANKRD30B	374860	broad.mit.edu	37	chr18	14810047	14810047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttttatcttgaatattaCctacatattttatgaagtat	3	4	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14810047	A	A	14810047	1	1	78	0	1	0	0	0	0	0	0	0	659	522	18	3		3	ANKRD30B	18	14810047	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4128191	14810047	63267201	1054	84497											
TTC39C	125488	broad.mit.edu	37	chr18	21703677	21703677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatgtccagcccattgtGgaatagtctttaaacatatt	6	10	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21703677	T	T	21703677	1	4	78	0	1	0	0	0	0	0	0	0	16835	1363	47	2		2	TTC39C	18	21703677	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6893630	21703677	56373571	1055	84498											
SS18	6760	broad.mit.edu	37	chr18	23637534	23637534	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaactctggtgttaatgtcTtagaggagaaaaacttacca	9	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23637534	A	A	23637534	1	1	78	0	1	0	0	0	0	0	0	0	15293	1624	56	5		5	SS18	18	23637534	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1933857	23637534	54439714	1056	84499											
CDH2	1000	broad.mit.edu	37	chr18	25572615	25572615	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagtggcccgaggaacacTtactttgaccacggtgacta	10	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25572615	A	A	25572615	1	1	78	0	1	0	0	0	0	0	0	0	3135	1624	56	5		5	CDH2	18	25572615	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1935081	25572615	52504633	1057	84500											
DTNA	1837	broad.mit.edu	37	chr18	32395800	32395800	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttgtttcagtctcaaatGatatgatatttacatagcag	6	6	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32395800	A	A	32395800	1	1	78	0	1	0	0	0	0	0	0	0	4828	1305	45	4		4	DTNA	18	32395800	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6823185	32395800	45681448	1058	84501											
DTNA	1837	broad.mit.edu	37	chr18	32459695	32459695	+	Intron	DEL	C	-	-													tggcgacatgtgagtatcttCcgcttggaagcattttctca							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32459695	-	-	32459695	6	5	78	0	1	1	0	1	0	0	0	0	4828	870	30	0		0	DTNA	18	32459695	Intron	DEL	C	TCGA-17-Z049-01A-01W-0746-08	63895	32459695	45617553	1059	84502											
MAPRE2	10982	broad.mit.edu	37	chr18	32677374	32677374	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaccacatctgggtacagtGagactcactccagtactgtt	8	12	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32677374	A	A	32677374	1	1	78	0	1	0	0	0	0	0	0	0	9387	1305	45	4		4	MAPRE2	18	32677374	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	217679	32677374	45399874	1060	84503											
MOCOS	55034	broad.mit.edu	37	chr18	33795389	33795389	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcctgggttaattttAaaattaacaaaatttatttt	4	3	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33795389	G	G	33795389	1	3	78	0	1	0	0	0	0	0	0	0	9783	377	13	5		5	MOCOS	18	33795389	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1118015	33795389	44281859	1061	84504											
RIT2	6014	broad.mit.edu	37	chr18	40554090	40554090	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctggctcattgtcaatcctGacctgggtcttataagcatc	9	11	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40554090	C	C	40554090	2	2	78	1	0	0	0	0	0	0	0	1	13498	1277	45	4		4	RIT2	18	40554090	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6758701	40554090	37523158	1062	84505											
SETBP1	26040	broad.mit.edu	37	chr18	42529998	42529998	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactctgacagcggacccgtCactcagaattgcttcatcag	8	13	5	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42529998	A	A	42529998	2	1	78	1	0	0	0	0	0	0	0	1	14242	813	29	3		3	SETBP1	18	42529998	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1975908	42529998	35547250	1063	84506											
SLC14A2	8170	broad.mit.edu	37	chr18	43262529	43262529	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaattcaggcttcagcaCgccgtccagatccccaggat	9	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43262529	G	G	43262529	1	3	78	0	1	0	0	0	0	0	0	0	14510	551	19	4		4	SLC14A2	18	43262529	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	732531	43262529	34814719	1064	84507											
KIAA1632	57724	broad.mit.edu	37	chr18	43437680	43437680	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggctctgttttttttttcTttttttttttccattaatct	3	7	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43437680	C	C	43437680	1	2	78	0	1	0	0	0	0	0	0	0	8319	1624	56	5		5	KIAA1632	18	43437680	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	175151	43437680	34639568	1065	84508											
ZCCHC2	54877	broad.mit.edu	37	chr18	60241246	60241246	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttctagcaagaaagatggGagttatgcccgtgttaatat	10	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60241246	T	T	60241246	1	4	78	0	1	0	0	0	0	0	0	0	17713	1189	41	3		3	ZCCHC2	18	60241246	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	16803566	60241246	17836002	1066	84509											
RTTN	25914	broad.mit.edu	37	chr18	67794780	67794780	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggacttcaaggtaaccCcacatggaccagggcaaccc	9	15	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67794780	G	G	67794780	3	3	78	1	0	0	0	0	1	0	0	0	13848	623	22	4	3439	4	RTTN	18	67794780	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7553534	67794780	10282468	1067	84510											
NETO1	81832	broad.mit.edu	37	chr18	70461478	70461478	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcccatctcaaactcacaCgctaaataacaaaatgccaa	3	15	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70461478	T	T	70461478	2	4	78	1	0	0	0	0	0	0	0	1	10434	550	19	4		4	NETO1	18	70461478	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2666698	70461478	7615770	1068	84511											
TSHZ1	10194	broad.mit.edu	37	chr18	72999246	72999247	+	Frame_Shift_Ins	INS	-	C	C													actccccagggagcctcacgINScccccaccgcacaagagcaa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72999247	C	C	72999246	7	5	78	1	0	1	1	0	0	0	0	0	16748	1074	38	0	1751	0	TSHZ1	18	72999246	Frame_Shift_Ins	INS	-	TCGA-17-Z049-01A-01W-0746-08	2537768	72999246	5078002	1069	84512											
CTDP1	9150	broad.mit.edu	37	chr18	77513803	77513803	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtgagcgcgggcagcgGgcagggactgaagcctgacc	17	11	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77513803	T	T	77513803	1	4	78	0	1	0	0	0	0	0	0	0	4036	1247	43	2		2	CTDP1	18	77513803	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4514557	77513803	563445	1070	84513											
TXNL4A	10907	broad.mit.edu	37	chr18	77737560	77737560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattaagcttccaaactgaCaatattcaatttcagtaaca	3	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77737560	A	A	77737560	1	1	78	0	1	0	0	0	0	0	0	0	16931	493	17	3		3	TXNL4A	18	77737560	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	223757	77737560	339688	1071	84514											
ARID3A	1820	broad.mit.edu	37	chr19	966497	966497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaagaaaaaagaagGtgcatgttcctgccttgagt	10	5	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	966497	T	T	966497	1	4	78	0	1	0	0	0	0	0	0	0	918	1276	44	3		3	ARID3A	19	966497	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08		966497	58162486	1072	84515											
ADAT3	113179	broad.mit.edu	37	chr19	1913034	1913034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctacggtgcgccctcgcccGacggcgccctgggcacccgc	13	20	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1913034	T	T	1913034	3	4	78	1	0	0	0	0	1	0	0	0	286	1058	37	3	942	3	ADAT3	19	1913034	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	946537	1913034	57215949	1073	84516											
ATCAY	85300	broad.mit.edu	37	chr19	3907700	3907700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagatatccggactctggCgtccatgcgactctccgcca	11	14	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3907700	A	A	3907700	1	1	78	0	1	0	0	0	0	0	0	0	1081	783	27	3		3	ATCAY	19	3907700	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1994666	3907700	55221283	1074	84517											
ANKRD24	170961	broad.mit.edu	37	chr19	4210294	4210294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctatgaggagatcgtgagGctgcggcaggagaggggccg	20	8	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4210294	T	T	4210294	3	4	78	1	0	0	0	0	1	0	0	0	653	1194	42	3	1030	3	ANKRD24	19	4210294	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	302594	4210294	54918689	1075	84518											
ANKRD24	170961	broad.mit.edu	37	chr19	4218088	4218088	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcaccctgcaggccaaCgtggcccagctggaggggca	17	13	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4218088	T	T	4218088	2	4	78	1	0	0	0	0	0	0	0	1	653	535	19	4		4	ANKRD24	19	4218088	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7794	4218088	54910895	1076	84519											
ZNRF4	148066	broad.mit.edu	37	chr19	5455442	5455442	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactcctggtctccatgtcAtctgccagaaaggccacctg	9	14	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5455442	G	G	5455442	1	3	78	0	1	0	0	0	0	0	0	0	18343	232	8	5		5	ZNRF4	19	5455442	5'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1237354	5455442	53673541	1077	84520											
FUT3	2525	broad.mit.edu	37	chr19	5844847	5844847	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttggctgcacccaggggatCcatgggtcagagtatctggg	15	10	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5844847	G	G	5844847	3	3	78	1	0	0	0	0	1	0	0	0	6165	855	30	4	1085	4	FUT3	19	5844847	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	389405	5844847	53284136	1078	84521											
SLC25A41	284427	broad.mit.edu	37	chr19	6430113	6430113	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggagcggaagccgccctcCtggaccatgctctgtagccc	13	15	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6430113	G	G	6430113	3	3	78	1	0	0	0	0	1	0	0	0	14620	680	24	4	709	4	SLC25A41	19	6430113	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	585266	6430113	52698870	1079	84522											
SLC25A23	79085	broad.mit.edu	37	chr19	6454458	6454458	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgaagccccccaaggatgTtcagccggttggtctttgag	12	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6454458	C	C	6454458	3	2	78	1	0	0	0	0	1	0	0	0	14600	1725	60	5	755	5	SLC25A23	19	6454458	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	24345	6454458	52674525	1080	84523											
EMR1	2015	broad.mit.edu	37	chr19	6903695	6903695	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctagatgcagagggttctAggaaatgtagtccctggctg	13	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6903695	T	T	6903695	1	4	78	0	1	0	0	0	0	0	0	0	5146	435	15	5		5	EMR1	19	6903695	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	449237	6903695	52225288	1081	84524											
EMR1	2015	broad.mit.edu	37	chr19	6927994	6927994	+	Intron	DEL	G	-	-													gaaggtctaaaagaggaagcGcagtgatctaaaggaaactg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6927994	-	-	6927994	6	5	78	0	1	1	0	1	0	0	0	0	5146	1102	38	0		0	EMR1	19	6927994	Intron	DEL	G	TCGA-17-Z049-01A-01W-0746-08	24299	6927994	52200989	1082	84525											
KIAA1543	57662	broad.mit.edu	37	chr19	7671671	7671671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcctcagtgccctacGcgctggtactggaagctggt	13	13	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7671671	T	T	7671671	1	4	78	0	1	0	0	0	0	0	0	0	8313	1074	38	3		3	KIAA1543	19	7671671	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	743677	7671671	51457312	1083	84526											
CLEC4G	339390	broad.mit.edu	37	chr19	7794157	7794157	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggtggatgaggaagaaaaAactctttggcaatcagctcc	12	8	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7794157	T	T	7794157	1	4	78	0	1	0	0	0	0	0	0	0	3549	29	1	5		5	CLEC4G	19	7794157	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	122486	7794157	51334826	1084	84527											
TIMM44	10469	broad.mit.edu	37	chr19	7998678	7998678	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggagggaaccattggtGggctcccgaaatggacagca	14	10	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7998678	A	A	7998678	1	1	78	0	1	0	0	0	0	0	0	0	16035	1363	47	4		4	TIMM44	19	7998678	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	204521	7998678	51130305	1085	84528											
MYO1F	4542	broad.mit.edu	37	chr19	8601852	8601852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttctcctcccagtctcGgggcctcttggtctcgttgg	11	15	4	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8601852	T	T	8601852	2	4	78	1	0	0	0	0	0	0	0	1	10167	1124	39	1		1	MYO1F	19	8601852	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	603174	8601852	50527131	1086	84529											
MUC16	94025	broad.mit.edu	37	chr19	9085589	9085589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaaaccccagaatggcCtgaggacagtgcctcagata	11	10	1	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9085589	A	A	9085589	3	1	78	1	0	0	0	0	1	0	0	0	10067	681	24	2	37633	2	MUC16	19	9085589	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	483737	9085589	50043394	1087	84530											
COL5A3	50509	broad.mit.edu	37	chr19	10078792	10078792	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcagtattggtggggtaCaccctattgccctgacacat	12	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10078792	T	T	10078792	1	4	78	0	1	0	0	0	0	0	0	0	3730	493	17	4		4	COL5A3	19	10078792	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	993203	10078792	49050191	1088	84531											
KRI1	65095	broad.mit.edu	37	chr19	10673395	10673395	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggggtggggatgtaggccTtctccataccctgccttctc	13	12	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10673395	G	G	10673395	1	3	78	0	1	0	0	0	0	0	0	0	8515	1624	56	5		5	KRI1	19	10673395	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	594603	10673395	48455588	1089	84532											
LDLR	3949	broad.mit.edu	37	chr19	11213428	11213428	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtgcgatggccaagtGgactgcgacaacggctcaga	16	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11213428	A	A	11213428	2	1	78	1	0	0	0	0	0	0	0	1	8776	1335	47	4		4	LDLR	19	11213428	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	540033	11213428	47915555	1090	84533											
LOC55908	55908	broad.mit.edu	37	chr19	11350393	11350393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggcccccatgggcggccCagaactggcacagcatgagg	15	14	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11350393	A	A	11350393	3	1	78	1	0	0	0	0	1	0	0	0	8964	594	21	2	82	2	LOC55908	19	11350393	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	136965	11350393	47778590	1091	84534											
DOCK6	57572	broad.mit.edu	37	chr19	11353908	11353908	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagccagcggggagtgggaGagtccctggccccagggtag	19	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11353908	C	C	11353908	1	2	78	0	1	0	0	0	0	0	0	0	4731	957	33	4		4	DOCK6	19	11353908	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3515	11353908	47775075	1092	84535											
CCDC151	115948	broad.mit.edu	37	chr19	11541544	11541545	+	Missense_Mutation	DNP	GG	TC	TC													ctgtcctgttcttcaggtatGgcttctcccacttccattcg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	11541545	TC	TC	11541544	3	4	78	1	0	0	0	0	1	0	0	0	2812	1348	47	2	1412	2	CCDC151	19	11541544	Missense_Mutation	DNP	GG	TCGA-17-Z049-01A-01W-0746-08	187636	11541544	47587439	1093	84536											
ZNF653	115950	broad.mit.edu	37	chr19	11608828	11608828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaagctccagacctcccCtctaaccaccagtgcttggc	8	17	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11608828	A	A	11608828	1	1	78	0	1	0	0	0	0	0	0	0	18193	696	24	2		2	ZNF653	19	11608828	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	67284	11608828	47520155	1094	84537											
RFX1	5989	broad.mit.edu	37	chr19	14080874	14080874	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttgccgaaggaggcggcGttgacgggctccagcttctg	16	11	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14080874	A	A	14080874	2	1	78	1	0	0	0	0	0	0	0	1	13370	1136	40	4		4	RFX1	19	14080874	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2472046	14080874	45048109	1095	84538											
IL27RA	9466	broad.mit.edu	37	chr19	14159684	14159684	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagataaatgacttacagtCagatccttatctcagggtgt	8	8	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14159684	T	T	14159684	1	4	78	0	1	0	0	0	0	0	0	0	7751	841	29	4		4	IL27RA	19	14159684	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	78810	14159684	44969299	1096	84539											
SLC1A6	6511	broad.mit.edu	37	chr19	15074958	15074959	+	Intron	INS	-	C	C													acctaagtgcttctccctaaINScccccccagatcaccatgga							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15074959	C	C	15074958	6	5	78	0	1	1	1	0	0	0	0	0	14549	58	2	0		0	SLC1A6	19	15074958	Intron	INS	-	TCGA-17-Z049-01A-01W-0746-08	915274	15074958	44054025	1097	84540											
AKAP8L	26993	broad.mit.edu	37	chr19	15511262	15511262	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaacggtatatagtaaaaCagctgcttgctccatagaca	8	9	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15511262	T	T	15511262	1	4	78	0	1	0	0	0	0	0	0	0	458	493	17	4		4	AKAP8L	19	15511262	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	436304	15511262	43617721	1098	84541											
CIB3	117286	broad.mit.edu	37	chr19	16279121	16279121	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacagaaaggaagctgggagGccatcctctgacccccaagg	13	12	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16279121	C	C	16279121	1	2	78	0	1	0	0	0	0	0	0	0	3453	1218	42	4		4	CIB3	19	16279121	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	767859	16279121	42849862	1099	84542											
CALR3	125972	broad.mit.edu	37	chr19	16593367	16593367	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtggagccagacgtctttaTgaataccttctggtttcagg	12	8	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16593367	A	A	16593367	3	1	78	1	0	0	0	0	1	0	0	0	2619	1464	51	5	354	5	CALR3	19	16593367	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	314246	16593367	42535616	1100	84543											
NWD1	284434	broad.mit.edu	37	chr19	16870093	16870093	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctggacgacgaggtcctGcaggatgtgtaccgagattg	14	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16870093	T	T	16870093	2	4	78	1	0	0	0	0	0	0	0	1	10876	1306	46	3		3	NWD1	19	16870093	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	276726	16870093	42258890	1101	84544											
SIN3B	23309	broad.mit.edu	37	chr19	16981866	16981866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcctcggagggtggcaGtgaacaccagctactcgggt	16	11	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16981866	T	T	16981866	1	4	78	0	1	0	0	0	0	0	0	0	14439	1044	36	3		3	SIN3B	19	16981866	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	111773	16981866	42147117	1102	84545											
CPAMD8	27151	broad.mit.edu	37	chr19	17058164	17058164	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctcccaaagagccatgctCcccccgggaaggtccccttt	9	18	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17058164	A	A	17058164	1	1	78	0	1	0	0	0	0	0	0	0	3827	870	30	3		3	CPAMD8	19	17058164	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	76298	17058164	42070819	1103	84546											
FAM125A	93343	broad.mit.edu	37	chr19	17533201	17533201	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgcccctgggagccacggAcacggctgtgtttgatgtcc	14	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17533201	T	T	17533201	3	4	78	1	0	0	0	0	1	0	0	0	5473	275	10	5	361	5	FAM125A	19	17533201	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	475037	17533201	41595782	1104	84547											
GLT25D1	79709	broad.mit.edu	37	chr19	17691563	17691563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagaaggctgtgcctcgcGtgaggaacctggtggaggcc	17	11	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17691563	T	T	17691563	3	4	78	1	0	0	0	0	1	0	0	0	6530	1145	40	3	1492	3	GLT25D1	19	17691563	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	158362	17691563	41437420	1105	84548											
UNC13A	23025	broad.mit.edu	37	chr19	17738861	17738861	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgggtctggaggaagcTggggtcccatggggtcacct	18	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17738861	C	C	17738861	1	2	78	0	1	0	0	0	0	0	0	0	17110	1595	55	5		5	UNC13A	19	17738861	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	47298	17738861	41390122	1106	84549											
JAK3	3718	broad.mit.edu	37	chr19	17945771	17945771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaagtgtctgcgcctcccGgagacactcgggggccaccc	13	16	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17945771	T	T	17945771	2	4	78	1	0	0	0	0	0	0	0	1	8009	1115	39	1		1	JAK3	19	17945771	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	206910	17945771	41183212	1107	84550											
COMP	1311	broad.mit.edu	37	chr19	18897496	18897496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccagagccccaagattgGgaccaggccagaatgacttc	12	12	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18897496	T	T	18897496	1	4	78	0	1	0	0	0	0	0	0	0	3756	1247	43	2		2	COMP	19	18897496	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	951725	18897496	40231487	1108	84551											
NCAN	1463	broad.mit.edu	37	chr19	19344697	19344697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgatcagggcttcgccgGggagaactgtgagattggtg	17	7	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19344697	T	T	19344697	3	4	78	1	0	0	0	0	1	0	0	0	10299	1232	43	2	3149	2	NCAN	19	19344697	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	447201	19344697	39784286	1109	84552											
HAPLN4	404037	broad.mit.edu	37	chr19	19373596	19373596	+	5'UTR	DEL	G	-	-													gcacccggactgcgctccccGcacacccggttaagactggg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19373596	-	-	19373596	6	5	78	0	1	1	0	1	0	0	0	0	7023	1101	38	0		0	HAPLN4	19	19373596	5'UTR	DEL	G	TCGA-17-Z049-01A-01W-0746-08	28899	19373596	39755387	1110	84553											
ZNF208	7757	broad.mit.edu	37	chr19	22155984	22155984	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggttgagaccttactaaAggttttgccacattcttcac	8	9	2	1	rs34025466		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22155984	G	G	22155984	3	3	78	1	0	0	0	0	1	0	0	0	17892	72	3	5	1994	5	ZNF208	19	22155984	Missense_Mutation	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2782388	22155984	36972999	1111	84554											
ZNF257	113835	broad.mit.edu	37	chr19	22257726	22257726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattctgccatatacttcaGtgctatgttaaaatagaagc	6	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22257726	T	T	22257726	1	4	78	0	1	0	0	0	0	0	0	0	17926	1044	36	3		3	ZNF257	19	22257726	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	101742	22257726	36871257	1112	84555											
ZNF492	57615	broad.mit.edu	37	chr19	22838537	22838537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtgttaaaatagaagCgttgagaatgggcataataa	12	3	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22838537	A	A	22838537	1	1	78	0	1	0	0	0	0	0	0	0	18070	783	27	3		3	ZNF492	19	22838537	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	580811	22838537	36290446	1113	84556											
ZNF536	9745	broad.mit.edu	37	chr19	30935852	30935852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcgagctgcccatgaaGgagaaggaagcgctggggaa	18	7	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935852	T	T	30935852	3	4	78	1	0	0	0	0	1	0	0	0	18101	991	35	2	1385	2	ZNF536	19	30935852	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	8097315	30935852	28193131	1114	84557											
TSHZ3	57616	broad.mit.edu	37	chr19	31768280	31768280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacgtgggtgacagaaGcactgaacccaaggagcagc	15	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768280	T	T	31768280	3	4	78	1	0	0	0	0	1	0	0	0	16750	971	34	3	830	3	TSHZ3	19	31768280	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	832428	31768280	27360703	1115	84558											
KIAA0355	9710	broad.mit.edu	37	chr19	34787463	34787463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgtgcactcatggccttGgcattgttggcctgcatctt	11	12	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34787463	T	T	34787463	1	4	78	0	1	0	0	0	0	0	0	0	8240	1363	47	2		2	KIAA0355	19	34787463	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3019183	34787463	24341520	1116	84559											
USF2	7392	broad.mit.edu	37	chr19	35769793	35769793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcgggagtcatccctggGgtggaggccggtgggcggtg	22	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35769793	T	T	35769793	1	4	78	0	1	0	0	0	0	0	0	0	17159	1247	43	2		2	USF2	19	35769793	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	982330	35769793	23359190	1117	84560											
ATP4A	495	broad.mit.edu	37	chr19	36054243	36054243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcccactgcctggttccCagcctaccctccagctcccg	7	23	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36054243	A	A	36054243	1	1	78	0	1	0	0	0	0	0	0	0	1149	609	21	2		2	ATP4A	19	36054243	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	284450	36054243	23074740	1118	84561											
U2AF1L4	199746	broad.mit.edu	37	chr19	36233706	36233706	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaacctcgggggtgaccTgggaataggagcgttgagag	18	6	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36233706	A	A	36233706	1	1	78	0	1	0	0	0	0	0	0	0	16948	1594	55	5		5	U2AF1L4	19	36233706	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	179463	36233706	22895277	1119	84562											
KIRREL2	84063	broad.mit.edu	37	chr19	36349172	36349172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagttagagtctctctgGgcccagtacacactttttaa	10	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36349172	T	T	36349172	1	4	78	0	1	0	0	0	0	0	0	0	8396	1247	43	2		2	KIRREL2	19	36349172	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	115466	36349172	22779811	1120	84563											
ZNF527	84503	broad.mit.edu	37	chr19	37879596	37879596	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataaaagactccatgctgaGaaggaatctttgataggtaa	9	5	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37879596	T	T	37879596	3	4	78	1	0	0	0	0	1	0	0	0	18095	933	33	3	659	3	ZNF527	19	37879596	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1530424	37879596	21249387	1121	84564											
ZNF781	163115	broad.mit.edu	37	chr19	38184462	38184462	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcgtttgagatgtaaaCcatcttgcccccattccctg	8	12	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38184462	T	T	38184462	1	4	78	0	1	0	0	0	0	0	0	0	18283	522	18	4		4	ZNF781	19	38184462	5'Flank	SNP	C	TCGA-17-Z049-01A-01W-0746-08	304866	38184462	20944521	1122	84565											
RYR1	6261	broad.mit.edu	37	chr19	39007937	39007937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgtattgcgggggaggCcagggcactgaggtctgggg	20	7	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39007937	A	A	39007937	1	1	78	0	1	0	0	0	0	0	0	0	13879	754	26	3		3	RYR1	19	39007937	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	823475	39007937	20121046	1123	84566											
RYR1	6261	broad.mit.edu	37	chr19	39008786	39008786	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaacaaaacaaaaggaaaGaaagaaggaaggatggagtg	12	3	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39008786	T	T	39008786	1	4	78	0	1	0	0	0	0	0	0	0	13879	957	33	3		3	RYR1	19	39008786	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	849	39008786	20120197	1124	84567											
RYR1	6261	broad.mit.edu	37	chr19	39037100	39037100	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctaggactcaagccagatcGagctgctgaaggagctgctg	13	10	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39037100	T	T	39037100	4	4	78	1	0	0	0	0	0	1	0	0	13879	1059	37	3	12378	3	RYR1	19	39037100	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	28314	39037100	20091883	1125	84568											
PAPL	390928	broad.mit.edu	37	chr19	39589822	39589823	+	Intron	DEL	GC	-	-													gcgcgcagggacggtgggggGcgcgcgcagggatggtgggg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39589823	-	-	39589822	6	5	78	0	1	1	0	1	0	0	0	0	11521	1218	42	0		0	PAPL	19	39589822	Intron	DEL	GC	TCGA-17-Z049-01A-01W-0746-08	552722	39589822	19539161	1126	84569											
IL28B	282617	broad.mit.edu	37	chr19	39734909	39734909	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaggggagagggcacagcCagtgtggtcaggtaggagca	18	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39734909	G	G	39734909	1	3	78	0	1	0	0	0	0	0	0	0	7753	609	21	4		4	IL28B	19	39734909	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	145087	39734909	19394074	1127	84570											
GMFG	9535	broad.mit.edu	37	chr19	39820165	39820165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagaccctctcctgaggaCagtagagctgtgtctcaccc	10	14	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39820165	A	A	39820165	1	1	78	0	1	0	0	0	0	0	0	0	6554	493	17	3		3	GMFG	19	39820165	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	85256	39820165	19308818	1128	84571											
SUPT5H	6829	broad.mit.edu	37	chr19	39962931	39962931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcacagaggaattcaggCctggggtgtgggtggctggg	19	7	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39962931	A	A	39962931	1	1	78	0	1	0	0	0	0	0	0	0	15517	754	26	3		3	SUPT5H	19	39962931	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	142766	39962931	19166052	1129	84572											
PRX	57716	broad.mit.edu	37	chr19	40902381	40902381	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagggagcttcatctctggGacttttggaagctgcacttc	11	10	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40902381	T	T	40902381	2	4	78	1	0	0	0	0	0	0	0	1	12748	1161	41	3		3	PRX	19	40902381	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	939450	40902381	18226602	1130	84573											
SPTBN4	57731	broad.mit.edu	37	chr19	40996038	40996038	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagaacgtggacaaggcGctgcagtttctgaaggagca	15	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40996038	T	T	40996038	2	4	78	1	0	0	0	0	0	0	0	1	15239	1074	38	3		3	SPTBN4	19	40996038	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	93657	40996038	18132945	1131	84574											
CYP2A7	1549	broad.mit.edu	37	chr19	41497406	41497406	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacacagacgaatggggtctGagggtgagctgcttcttgcc	15	9	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41497406	A	A	41497406	1	1	78	0	1	0	0	0	0	0	0	0	4196	1305	45	4		4	CYP2A7	19	41497406	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	501368	41497406	17631577	1132	84575											
MEGF8	1954	broad.mit.edu	37	chr19	42866204	42866204	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcagaaggagggggtcTggatgggtgtgagtgagcca	22	4	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42866204	A	A	42866204	1	1	78	0	1	0	0	0	0	0	0	0	9556	1595	55	5		5	MEGF8	19	42866204	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1368798	42866204	16262779	1133	84576											
PSG8	440533	broad.mit.edu	37	chr19	43262633	43262633	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgcttcatgtagaaacAcagactttctcaagtgtgaa	8	9	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43262633	G	G	43262633	1	3	78	0	1	0	0	0	0	0	0	0	12767	174	6	5		5	PSG8	19	43262633	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	396429	43262633	15866350	1134	84577											
PSG6	5675	broad.mit.edu	37	chr19	43414573	43414573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgttgatcaagcctagGcctactctggtttgcctgga	10	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43414573	T	T	43414573	1	4	78	0	1	0	0	0	0	0	0	0	12765	1218	42	3		3	PSG6	19	43414573	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	151940	43414573	15714410	1135	84578											
PSG11	5680	broad.mit.edu	37	chr19	43519365	43519365	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatgctttggagtaatctgAgggataaagagcttttgtcc	11	5	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43519365	T	T	43519365	2	4	78	1	0	0	0	0	0	0	0	1	12760	291	11	5		5	PSG11	19	43519365	Silent	SNP	A	TCGA-17-Z049-01A-01W-0746-08	104792	43519365	15609618	1136	84579											
PSG5	5673	broad.mit.edu	37	chr19	43674440	43674440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattgatgggagatgattaTattcttgcagtttttttttt	8	2	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43674440	C	C	43674440	1	2	78	0	1	0	0	0	0	0	0	0	12764	1421	49	5		5	PSG5	19	43674440	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	155075	43674440	15454543	1137	84580											
PSG4	5672	broad.mit.edu	37	chr19	43709732	43709732	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgtggagataagcctaGgatccagaagcttcctgagt	11	10	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43709732	T	T	43709732	1	4	78	0	1	0	0	0	0	0	0	0	12763	1015	35	2		2	PSG4	19	43709732	5'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08	35292	43709732	15419251	1138	84581											
PSG9	5678	broad.mit.edu	37	chr19	43765853	43765853	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccattgttgatcaagcctagGcctactctggtttgcttggg	11	10	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43765853	C	C	43765853	1	2	78	0	1	0	0	0	0	0	0	0	12768	1218	42	4		4	PSG9	19	43765853	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	56121	43765853	15363130	1139	84582											
CD177	57126	broad.mit.edu	37	chr19	43859867	43859867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggaaggctgtctggaggGgacaacagaagagatctgcc	15	7	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43859867	T	T	43859867	3	4	78	1	0	0	0	0	1	0	0	0	3001	1232	43	2	448	2	CD177	19	43859867	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	94014	43859867	15269116	1140	84583											
CEACAM20	125931	broad.mit.edu	37	chr19	45029372	45029372	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagggagctctgaggccatAggactggcattccacccaca	11	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45029372	G	G	45029372	1	3	78	0	1	0	0	0	0	0	0	0	3221	435	15	5		5	CEACAM20	19	45029372	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1169505	45029372	14099611	1141	84584											
RSPH6A	81492	broad.mit.edu	37	chr19	46318261	46318261	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggacaggctgcccctctgTgaccaaccaggggcgtttcg	14	13	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46318261	A	A	46318261	2	1	78	1	0	0	0	0	0	0	0	1	13818	1683	59	5		5	RSPH6A	19	46318261	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1288889	46318261	12810722	1142	84585											
SYMPK	8189	broad.mit.edu	37	chr19	46345509	46345509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccagcccctctcaccCagcttcatcttcttgagtgt	5	19	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46345509	A	A	46345509	2	1	78	1	0	0	0	0	0	0	0	1	15558	608	21	2		2	SYMPK	19	46345509	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	27248	46345509	12783474	1143	84586											
NOVA2	4858	broad.mit.edu	37	chr19	46443836	46443836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgccagccagcccggcgGggcccagcaggccggaggcg	17	18	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46443836	T	T	46443836	3	4	78	1	0	0	0	0	1	0	0	0	10650	1232	43	2	718	2	NOVA2	19	46443836	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	98327	46443836	12685147	1144	84587											
HIF3A	64344	broad.mit.edu	37	chr19	46834463	46834463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgagggagtggagctgctggGagtgagacctcccaaaaggt	17	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46834463	T	T	46834463	3	4	78	1	0	0	0	0	1	0	0	0	7172	1174	41	3	1837	3	HIF3A	19	46834463	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	390627	46834463	12294520	1145	84588											
SLC8A2	6543	broad.mit.edu	37	chr19	47940789	47940789	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaattaccaaggccaagttCgttttcttgatgagtttatc	7	9	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47940789	G	G	47940789	2	3	78	1	0	0	0	0	0	0	0	1	14821	871	31	4		4	SLC8A2	19	47940789	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1106326	47940789	11188194	1146	84589											
LIG1	3978	broad.mit.edu	37	chr19	48643258	48643258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccactgccttgagaaggaCaccatcacccacgccaagct	9	16	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48643258	A	A	48643258	3	1	78	1	0	0	0	0	1	0	0	0	8853	478	17	3	1770	3	LIG1	19	48643258	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	702469	48643258	10485725	1147	84590											
NUCB1	4924	broad.mit.edu	37	chr19	49414548	49414548	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagaggattgagggtaGctttgcggaaggggagaagg	21	3	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49414548	C	C	49414548	1	2	78	0	1	0	0	0	0	0	0	0	10813	986	34	4		4	NUCB1	19	49414548	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	771290	49414548	9714435	1148	84591											
KLK3	354	broad.mit.edu	37	chr19	51358121	51358121	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgccagcagggcaggggCggagtcctggggaatgaagg	22	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51358121	T	T	51358121	1	4	78	0	1	0	0	0	0	0	0	0	8476	783	27	4		4	KLK3	19	51358121	5'Flank	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1943573	51358121	7770862	1149	84592											
KLK3	354	broad.mit.edu	37	chr19	51361620	51361620	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagcccagatgcctgggtctGagggaggaggggacaggact	19	8	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51361620	C	C	51361620	1	2	78	0	1	0	0	0	0	0	0	0	8476	1305	45	4		4	KLK3	19	51361620	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3499	51361620	7767363	1150	84593											
KLK3	354	broad.mit.edu	37	chr19	51361684	51361684	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaccaggtggggtccaGcccacaacagtgtttttgcc	12	11	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51361684	A	A	51361684	1	1	78	0	1	0	0	0	0	0	0	0	8476	986	34	4		4	KLK3	19	51361684	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	64	51361684	7767299	1151	84594											
SIGLEC9	27180	broad.mit.edu	37	chr19	51628959	51628959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgagcaggggacaccccCtatgatctcctggataggga	13	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51628959	T	T	51628959	3	4	78	1	0	0	0	0	1	0	0	0	14428	681	24	4	533	4	SIGLEC9	19	51628959	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	267275	51628959	7500024	1152	84595											
SIGLEC7	27036	broad.mit.edu	37	chr19	51647614	51647614	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgagcttcccccagggcTgtaccatggatcctctgtcc	10	16	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51647614	A	A	51647614	1	1	78	0	1	0	0	0	0	0	0	0	14426	1595	55	5		5	SIGLEC7	19	51647614	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	18655	51647614	7481369	1153	84596											
LIM2	3982	broad.mit.edu	37	chr19	51890754	51890754	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgaattcccgggacttgaAgggaggaactggggggagag	19	6	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51890754	T	T	51890754	1	4	78	0	1	0	0	0	0	0	0	0	8867	87	3	5		5	LIM2	19	51890754	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	243140	51890754	7238229	1154	84597											
SIGLEC10	89790	broad.mit.edu	37	chr19	51920674	51920674	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccctccggcaccatcactGactcctgcactcgtatccag	8	18	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51920674	A	A	51920674	3	1	78	1	0	0	0	0	1	0	0	0	14419	1294	45	4	2050	4	SIGLEC10	19	51920674	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	29920	51920674	7208309	1155	84598											
ZNF610	162963	broad.mit.edu	37	chr19	52852623	52852623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcttagattctatctctcGtgacccagtgacatgaatgt	8	10	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52852623	T	T	52852623	1	4	78	0	1	0	0	0	0	0	0	0	18163	1160	40	3		3	ZNF610	19	52852623	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	931949	52852623	6276360	1156	84599											
PRKCG	5582	broad.mit.edu	37	chr19	54394781	54394781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgaccttgtgatccgcCcgccttggcctcccaaagtg	9	17	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54394781	A	A	54394781	1	1	78	0	1	0	0	0	0	0	0	0	12618	638	22	2		2	PRKCG	19	54394781	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1542158	54394781	4734202	1157	84600											
CACNG6	59285	broad.mit.edu	37	chr19	54502970	54502970	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctgtatcatcatggtgctCagtaaaggtgcagagttcct	10	9	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54502970	A	A	54502970	2	1	78	1	0	0	0	0	0	0	0	1	2587	813	29	3		3	CACNG6	19	54502970	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	108189	54502970	4626013	1158	84601											
LILRB1	10859	broad.mit.edu	37	chr19	55144342	55144342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagacagagacaggggatGggcggggagggggagactca	21	6	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55144342	T	T	55144342	1	4	78	0	1	0	0	0	0	0	0	0	8862	1363	47	2		2	LILRB1	19	55144342	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	641372	55144342	3984641	1159	84602											
LILRB1	10859	broad.mit.edu	37	chr19	55144405	55144405	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagggtcccagagggagacCtggggaggtgtcagctcaga	18	8	2	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55144405	A	A	55144405	1	1	78	0	1	0	0	0	0	0	0	0	8862	696	24	2		2	LILRB1	19	55144405	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	63	55144405	3984578	1160	84603											
LILRB1	10859	broad.mit.edu	37	chr19	55147065	55147065	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagatggacactcgggtgaGaccccacccctgtcccaggc	13	15	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55147065	T	T	55147065	1	4	78	0	1	0	0	0	0	0	0	0	8862	957	33	3		3	LILRB1	19	55147065	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2660	55147065	3981918	1161	84604											
KIR2DL4	3805	broad.mit.edu	37	chr19	55315502	55315502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccatgggaaggcctggggGgagtctctcatgaactagta	15	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55315502	T	T	55315502	1	4	78	0	1	0	0	0	0	0	0	0	8389	1247	43	2		2	KIR2DL4	19	55315502	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	168437	55315502	3813481	1162	84605											
KIR3DL1	3811	broad.mit.edu	37	chr19	55377077	55377077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagcagctgtatcctcaGcatgttctatggtttctatg	8	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55377077	T	T	55377077	1	4	78	0	1	0	0	0	0	0	0	0	8391	986	34	3		3	KIR3DL1	19	55377077	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	61575	55377077	3751906	1163	84606											
FCAR	2204	broad.mit.edu	37	chr19	55399520	55399520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactttctctgccacagcacCaaagtggggaacacccggcc	9	15	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55399520	A	A	55399520	3	1	78	1	0	0	0	0	1	0	0	0	5830	595	21	2	522	2	FCAR	19	55399520	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	22443	55399520	3729463	1164	84607											
NLRP2	55655	broad.mit.edu	37	chr19	55501766	55501766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcatgatagaaggtggGgagttcacaagaaggggctt	16	5	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55501766	T	T	55501766	1	4	78	0	1	0	0	0	0	0	0	0	10572	1247	43	2		2	NLRP2	19	55501766	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	102246	55501766	3627217	1165	84608											
TNNT1	7138	broad.mit.edu	37	chr19	55658246	55658246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggagacgctccagaccCggagagggcgggcgagggcc	20	12	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55658246	A	A	55658246	1	1	78	0	1	0	0	0	0	0	0	0	16453	667	23	1		1	TNNT1	19	55658246	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	156480	55658246	3470737	1166	84609											
NLRP11	204801	broad.mit.edu	37	chr19	56313142	56313142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggaaagcactagtgaaGgtctgaacatcttctccaca	9	10	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56313142	T	T	56313142	1	4	78	0	1	0	0	0	0	0	0	0	10568	1015	35	2		2	NLRP11	19	56313142	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	654896	56313142	2815841	1167	84610											
NLRP4	147945	broad.mit.edu	37	chr19	56372683	56372683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgagaagacagcgtagtgCgtatatgtgttacaagtggc	13	5	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56372683	A	A	56372683	1	1	78	0	1	0	0	0	0	0	0	0	10574	783	27	3		3	NLRP4	19	56372683	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	59541	56372683	2756300	1168	84611											
NLRP13	126204	broad.mit.edu	37	chr19	56423995	56423995	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgagtcatcaaagtgtctCatgaaatatacccgtaggtc	8	9	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56423995	A	A	56423995	3	1	78	1	0	0	0	0	1	0	0	0	10570	826	29	3	1969	3	NLRP13	19	56423995	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	51312	56423995	2704988	1169	84612											
NLRP13	126204	broad.mit.edu	37	chr19	56424114	56424114	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcgtgatcagtaaggtagCcaggggaaccaattctttct	11	8	3	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56424114	G	G	56424114	3	3	78	1	0	0	0	0	1	0	0	0	10570	739	26	4	2088	4	NLRP13	19	56424114	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	119	56424114	2704869	1170	84613											
NLRP5	126206	broad.mit.edu	37	chr19	56569690	56569690	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcatctgaccagtctaaaCctggtgcagaataacttcag	9	11	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56569690	T	T	56569690	2	4	78	1	0	0	0	0	0	0	0	1	10575	506	18	4		4	NLRP5	19	56569690	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	145576	56569690	2559293	1171	84614											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701605	56701605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacttaaatgatttattgCacacgtcacatgcaaagggc	7	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701605	A	A	56701605	3	1	78	1	0	0	0	0	1	0	0	0	18368	710	25	3	412	3	ZSCAN5B	19	56701605	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	131915	56701605	2427378	1172	84615											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56757807	56757807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacacgggacttacatcCccagagcctcagcttccaaa	7	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56757807	A	A	56757807	1	1	78	0	1	0	0	0	0	0	0	0	18367	638	22	2		2	ZSCAN5A	19	56757807	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	56202	56757807	2371176	1173	84616											
PEG3	5178	broad.mit.edu	37	chr19	57328635	57328635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtcaaaatgatagcgcCtctttctttcaagaactctc	6	11	5	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57328635	T	T	57328635	3	4	78	1	0	0	0	0	1	0	0	0	11814	681	24	4	3595	4	PEG3	19	57328635	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	570828	57328635	1800348	1174	84617											
ZNF606	80095	broad.mit.edu	37	chr19	58511942	58511942	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagacagatctggaccaCctgccctaaagccccacctg	8	16	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58511942	A	A	58511942	1	1	78	0	1	0	0	0	0	0	0	0	18159	522	18	3		3	ZNF606	19	58511942	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1183307	58511942	617041	1175	84618											
TMC2	117532	broad.mit.edu	37	chr20	2591006	2591006	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatggccatgggagtgcagaGatggcagccaaacaagtata	14	7	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2591006	C	C	2591006	1	2	78	0	1	0	0	0	0	0	0	0	16108	957	33	4		4	TMC2	20	2591006	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08		2591006	60434514	1176	84619											
SPTLC3	55304	broad.mit.edu	37	chr20	13106962	13106962	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaatgcttcaggaatcatTttttcttcacacatctggtt	5	9	5	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13106962	G	G	13106962	1	3	78	0	1	0	0	0	0	0	0	0	15243	1856	64	5		5	SPTLC3	20	13106962	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	10515956	13106962	49918558	1177	84620											
C20orf7	79133	broad.mit.edu	37	chr20	13797026	13797026	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggacaggtatactgttaGatgagacgggattaagtctg	14	4	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13797026	T	T	13797026	1	4	78	0	1	0	0	0	0	0	0	0	2137	957	33	3		3	C20orf7	20	13797026	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	690064	13797026	49228494	1178	84621											
ZNF133	7692	broad.mit.edu	37	chr20	18297071	18297071	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaggccgtatgtgtgccgaGagtgcgggcgaggctttagc	18	8	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18297071	T	T	18297071	4	4	78	1	0	0	0	0	0	1	0	0	17849	943	33	3	1583	3	ZNF133	20	18297071	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4500045	18297071	44728449	1179	84622											
SEC23B	10483	broad.mit.edu	37	chr20	18508067	18508067	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtttttatatttgattacCtccttcggtaattcaggcat	6	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18508067	T	T	18508067	1	4	78	0	1	0	0	0	0	0	0	0	14105	696	24	4		4	SEC23B	20	18508067	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	210996	18508067	44517453	1180	84623											
C20orf26	26074	broad.mit.edu	37	chr20	20243491	20243491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgattgattgtatctcgGgacagaaaaagacatactga	9	6	2	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20243491	T	T	20243491	1	4	78	0	1	0	0	0	0	0	0	0	2128	1247	43	2		2	C20orf26	20	20243491	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1735424	20243491	42782029	1181	84624											
NAPB	63908	broad.mit.edu	37	chr20	23361779	23361779	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatcaaaatgaaatgatacCaagaacaagagagaatgtgt	8	5	1	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23361779	G	G	23361779	1	3	78	0	1	0	0	0	0	0	0	0	10256	609	21	4		4	NAPB	20	23361779	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3118288	23361779	39663741	1182	84625											
CSTL1	128817	broad.mit.edu	37	chr20	23424813	23424813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctggggctgtctggcacCtcctgaggcacctgggtgaa	15	13	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23424813	T	T	23424813	1	4	78	0	1	0	0	0	0	0	0	0	4021	696	24	4		4	CSTL1	20	23424813	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	63034	23424813	39600707	1183	84626											
VSX1	30813	broad.mit.edu	37	chr20	25056781	25056781	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcattgcattttatcttgAcattgtcagaagaaaatcaa	7	6	3	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25056781	T	T	25056781	1	4	78	0	1	0	0	0	0	0	0	0	17358	290	10	5		5	VSX1	20	25056781	3'UTR	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1631968	25056781	37968739	1184	84627											
MYLK2	85366	broad.mit.edu	37	chr20	30408011	30408011	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagacccaaagaaagctccGgatccacccaccctgaagaa	7	16	0	4			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30408011	C	C	30408011	2	2	78	1	0	0	0	0	0	0	0	1	10151	1103	39	4		4	MYLK2	20	30408011	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5351230	30408011	32617509	1185	84628											
DUSP15	128853	broad.mit.edu	37	chr20	30458315	30458315	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccaccgcccgccgacccccGgcccgggagggaaatggtgg	16	17	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30458315	C	C	30458315	1	2	78	0	1	0	0	0	0	0	0	0	4855	1131	39	4		4	DUSP15	20	30458315	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	50304	30458315	32567205	1186	84629											
HCK	3055	broad.mit.edu	37	chr20	30689091	30689091	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctcatttcccaactgcttCcgtttctaattccacggctc	4	16	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30689091	T	T	30689091	1	4	78	0	1	0	0	0	0	0	0	0	7060	870	30	4		4	HCK	20	30689091	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	230776	30689091	32336429	1187	84630											
FAM83C	128876	broad.mit.edu	37	chr20	33874960	33874960	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacaacctcctgtcctctGgggcctgctcgccaggccga	13	16	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33874960	A	A	33874960	3	1	78	1	0	0	0	0	1	0	0	0	5688	1348	47	4	625	4	FAM83C	20	33874960	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3185869	33874960	29150560	1188	84631											
CPNE1	8904	broad.mit.edu	37	chr20	34219852	34219852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccccagcccacccaatcCcaggggtctcatacctcaga	6	19	2	1	rs139024672	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34219852	A	A	34219852	1	1	78	0	1	0	0	0	0	0	0	0	3843	638	22	2		2	CPNE1	20	34219852	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	344892	34219852	28805668	1189	84632											
RBM12	10137	broad.mit.edu	37	chr20	34240756	34240756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagggccggggccggggCcggggccaggcccaaaagct	20	14	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34240756	A	A	34240756	3	1	78	1	0	0	0	0	1	0	0	0	13221	739	26	3	313	3	RBM12	20	34240756	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	20904	34240756	28784764	1190	84633											
RPN2	6185	broad.mit.edu	37	chr20	35835961	35835961	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagcccctacaaggacataCccattaaatggagggcaagg	10	11	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35835961	G	G	35835961	1	3	78	0	1	0	0	0	0	0	0	0	13719	522	18	4		4	RPN2	20	35835961	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1595205	35835961	27189559	1191	84634											
EMILIN3	90187	broad.mit.edu	37	chr20	39992303	39992303	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgggggctgctctgctGtaggaagggggcctggggcc	22	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39992303	T	T	39992303	4	4	78	1	0	0	0	0	0	1	0	0	5137	1372	48	3	1819	3	EMILIN3	20	39992303	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4156342	39992303	23033217	1192	84635											
R3HDML	140902	broad.mit.edu	37	chr20	42973925	42973925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgggcatcctccaatcGgctgggctgtgccatccaca	13	13	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42973925	T	T	42973925	3	4	78	1	0	0	0	0	1	0	0	0	12997	1116	39	1	550	1	R3HDML	20	42973925	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2981622	42973925	20051595	1193	84636											
DNTTIP1	116092	broad.mit.edu	37	chr20	44433896	44433896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagctcaggagttcactaGtaggactacactttctggaa	9	9	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44433896	T	T	44433896	1	4	78	0	1	0	0	0	0	0	0	0	4721	1044	36	3		3	DNTTIP1	20	44433896	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1459971	44433896	18591624	1194	84637											
CDH22	64405	broad.mit.edu	37	chr20	44856177	44856177	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccacggtgaagtggtgctCgccgtccagcacgctgtaca	13	13	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44856177	A	A	44856177	4	1	78	1	0	0	0	0	0	1	0	0	3137	893	31	3	1882	3	CDH22	20	44856177	Nonsense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	422281	44856177	18169343	1195	84638											
SLC9A8	23315	broad.mit.edu	37	chr20	48466249	48466249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttgaaacactttgaaaGtcttacattcttagagctag	6	7	3	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48466249	T	T	48466249	1	4	78	0	1	0	0	0	0	0	0	0	14834	1044	36	3		3	SLC9A8	20	48466249	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3610072	48466249	14559271	1196	84639											
TSHZ2	128553	broad.mit.edu	37	chr20	51872703	51872703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagtcactggctggccaaCgtcaagtaccagcttaggaa	10	11	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51872703	A	A	51872703	3	1	78	1	0	0	0	0	1	0	0	0	16749	535	19	3	2712	3	TSHZ2	20	51872703	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3406454	51872703	11152817	1197	84640											
APCDD1L	164284	broad.mit.edu	37	chr20	57042036	57042036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagagtggggaggggcaGtgatgacagccgggcagcca	19	9	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57042036	T	T	57042036	1	4	78	0	1	0	0	0	0	0	0	0	768	1044	36	3		3	APCDD1L	20	57042036	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	5169333	57042036	5983484	1198	84641											
EDN3	1908	broad.mit.edu	37	chr20	57897589	57897589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtctggtccagtgggaaCcccagatctcatgggatgct	13	11	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57897589	A	A	57897589	1	1	78	0	1	0	0	0	0	0	0	0	4958	522	18	3		3	EDN3	20	57897589	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	855553	57897589	5127931	1199	84642											
TAF4	6874	broad.mit.edu	37	chr20	60581826	60581826	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagctcctctgggtggaaaGacagacacgaggggtcaggc	15	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60581826	C	C	60581826	1	2	78	0	1	0	0	0	0	0	0	0	15645	957	33	4		4	TAF4	20	60581826	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2684237	60581826	2443694	1200	84643											
LAMA5	3911	broad.mit.edu	37	chr20	60910172	60910172	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtggggcttgcagaagcacTggccggtgccctgggggcca	18	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60910172	A	A	60910172	3	1	78	1	0	0	0	0	1	0	0	0	8681	1580	55	5	8944	5	LAMA5	20	60910172	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	328346	60910172	2115348	1201	84644											
TPD52L2	7165	broad.mit.edu	37	chr20	62521253	62521253	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgacaacctcccttcctcAgcggggagtggtgacaagcc	12	13	1	2	rs149447981	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62521253	T	T	62521253	2	4	78	1	0	0	0	0	0	0	0	1	16523	175	7	5		5	TPD52L2	20	62521253	Silent	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1611081	62521253	504267	1202	84645											
MYT1	4661	broad.mit.edu	37	chr20	62871297	62871297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcaccacagctacccccCagggtctcttcggaaagcag	10	17	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62871297	A	A	62871297	1	1	78	0	1	0	0	0	0	0	0	0	10200	609	21	2		2	MYT1	20	62871297	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	350044	62871297	154223	1203	84646											
TPTE	7179	broad.mit.edu	37	chr21	10906886	10906886	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacataattctttcccagaaGgggaagggggagctatactt	11	7	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10906886	T	T	10906886	1	4	78	0	1	0	0	0	0	0	0	0	16554	1015	35	2		2	TPTE	21	10906886	3'UTR	SNP	G	TCGA-17-Z049-01A-01W-0746-08		10906886	37223009	1204	84647											
TPTE	7179	broad.mit.edu	37	chr21	10934087	10934087	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatgattctaacgaccctaTtatggaagtgcttaggatcg	9	8	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934087	A	A	10934087	3	1	78	1	0	0	0	0	1	0	0	0	16554	1493	52	5	801	5	TPTE	21	10934087	Missense_Mutation	SNP	T	TCGA-17-Z049-01A-01W-0746-08	27201	10934087	37195808	1205	84648											
TPTE	7179	broad.mit.edu	37	chr21	10944951	10944952	+	Intron	DNP	TG	AT	AT													agggaaaaatataacattcaTgggaagttttcaaacaataa							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	10944952	AT	AT	10944951	1	1	78	0	1	0	0	0	0	0	0	0	16554	1479	51	5		5	TPTE	21	10944951	Intron	DNP	TG	TCGA-17-Z049-01A-01W-0746-08	10864	10944951	37184944	1206	84649											
POTED	317754	broad.mit.edu	37	chr21	14983113	14983113	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggcaggacatggggggatGatggggacataccctcctgg	18	8	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14983113	A	A	14983113	1	1	78	0	1	0	0	0	0	0	0	0	12359	1305	45	4		4	POTED	21	14983113	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4038162	14983113	33146782	1207	84650											
NCAM2	4685	broad.mit.edu	37	chr21	22658668	22658668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtggtttgccgagttagCagttcacctgcacctgctgt	12	10	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22658668	A	A	22658668	3	1	78	1	0	0	0	0	1	0	0	0	10298	709	25	3	431	3	NCAM2	21	22658668	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	7675555	22658668	25471227	1208	84651											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212500	28212500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctatctcgcattcctgctAgaggacacggatggggatgt	13	9	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28212500	G	G	28212500	1	3	78	0	1	0	0	0	0	0	0	0	255	435	15	5		5	ADAMTS1	21	28212500	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	5553832	28212500	19917395	1209	84652											
KRTAP13-4	284827	broad.mit.edu	37	chr21	31802568	31802568	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatcttcttaggtacactCagctgaactcccatctctca	5	13	5	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31802568	A	A	31802568	1	1	78	0	1	0	0	0	0	0	0	0	8596	841	29	3		3	KRTAP13-4	21	31802568	5'Flank	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3590068	31802568	16327327	1210	84653											
KRTAP19-7	337974	broad.mit.edu	37	chr21	31933578	31933578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccacagccgtagcctaGgcctccatagtagctgccgg	10	16	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31933578	T	T	31933578	3	4	78	1	0	0	0	0	1	0	0	0	8605	991	35	2	163	2	KRTAP19-7	21	31933578	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	131010	31933578	16196317	1211	84654											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127565	32127565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccataaccacagccataatgGgagccaaacccacagccata	6	15	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32127565	T	T	32127565	2	4	78	1	0	0	0	0	0	0	0	1	8609	1219	43	2		2	KRTAP21-1	21	32127565	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	193987	32127565	16002330	1212	84655											
ITSN1	6453	broad.mit.edu	37	chr21	35256009	35256009	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctccccagcatgggccccaGggctccacggctctaggaca	11	18	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35256009	C	C	35256009	1	2	78	0	1	0	0	0	0	0	0	0	7996	1015	35	4		4	ITSN1	21	35256009	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3128444	35256009	12873886	1213	84656											
DSCAM	1826	broad.mit.edu	37	chr21	41458918	41458918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatacaataaatcagaccCtttcagtgctaaagctgaga	7	8	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41458918	A	A	41458918	1	1	78	0	1	0	0	0	0	0	0	0	4808	696	24	2		2	DSCAM	21	41458918	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	6202909	41458918	6670977	1214	84657											
PRDM15	63977	broad.mit.edu	37	chr21	43279791	43279791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtactggctgcagtcttcaCaccctgcaagcagacatccg	10	14	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43279791	A	A	43279791	3	1	78	1	0	0	0	0	1	0	0	0	12562	478	17	3	3674	3	PRDM15	21	43279791	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1820873	43279791	4850104	1215	84658											
UMODL1	89766	broad.mit.edu	37	chr21	43546920	43546920	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgagtctccacctatacAactgagggaggcaacccctg	9	14	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43546920	T	T	43546920	1	4	78	0	1	0	0	0	0	0	0	0	17106	145	5	5		5	UMODL1	21	43546920	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	267129	43546920	4582975	1216	84659											
TRAPPC10	7109	broad.mit.edu	37	chr21	45504114	45504114	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtacgacgtgtactcacagGagccccagctgcacgtggag	13	12	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45504114	T	T	45504114	4	4	78	1	0	0	0	0	0	1	0	0	16581	1175	41	3	2408	3	TRAPPC10	21	45504114	Nonsense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1957194	45504114	2625781	1217	84660											
KRTAP12-2	353323	broad.mit.edu	37	chr21	46086733	46086733	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggagctgggcacacaaCaggctggctggcaggggctg	19	10	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46086733	G	G	46086733	3	3	78	1	0	0	0	0	1	0	0	0	8590	478	17	4	373	4	KRTAP12-2	21	46086733	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	582619	46086733	2043162	1218	84661											
C21orf29	54084	broad.mit.edu	37	chr21	46097035	46097035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcttggacctttttgacCacattatccagatcaactat	6	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46097035	A	A	46097035	1	1	78	0	1	0	0	0	0	0	0	0	2146	609	21	2		2	C21orf29	21	46097035	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	10302	46097035	2032860	1219	84662											
CECR5	27440	broad.mit.edu	37	chr22	17629630	17629630	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcacccaaacagatctgaGaagaacctgtctcatttagt	8	10	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17629630	A	A	17629630	1	1	78	0	1	0	0	0	0	0	0	0	3237	957	33	4		4	CECR5	22	17629630	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08		17629630	33674936	1220	84663											
CECR2	27443	broad.mit.edu	37	chr22	17956598	17956598	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttaagaaatctctgtttGatttctcaacttccctctct	3	10	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17956598	T	T	17956598	1	4	78	0	1	0	0	0	0	0	0	0	3236	1305	45	3		3	CECR2	22	17956598	5'Flank	SNP	G	TCGA-17-Z049-01A-01W-0746-08	326968	17956598	33347968	1221	84664											
DGCR14	8220	broad.mit.edu	37	chr22	19132106	19132106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcctcgggggcctggaCgcggcgggaagcaacaagga	17	12	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19132106	A	A	19132106	2	1	78	1	0	0	0	0	0	0	0	1	4500	523	19	3		3	DGCR14	22	19132106	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1175508	19132106	32172460	1222	84665											
LZTR1	8216	broad.mit.edu	37	chr22	21340155	21340155	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgctcaatgacctcctgCggttcgatgtgaaagactgc	10	12	1	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21340155	T	T	21340155	3	4	78	1	0	0	0	0	1	0	0	0	9225	759	27	4	299	4	LZTR1	22	21340155	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2208049	21340155	29964411	1223	84666											
BCR	613	broad.mit.edu	37	chr22	23637450	23637450	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacccagggtggggtgggGtgggcagctgtggctctgaa	20	8	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23637450	T	T	23637450	1	4	78	0	1	0	0	0	0	0	0	0	1393	1276	44	3		3	BCR	22	23637450	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2297295	23637450	27667116	1224	84667											
SEZ6L	23544	broad.mit.edu	37	chr22	26688759	26688759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctcctctcctcctccaCggagaagcctggcccaccgg	9	18	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26688759	A	A	26688759	3	1	78	1	0	0	0	0	1	0	0	0	14256	536	19	3	488	3	SEZ6L	22	26688759	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3051309	26688759	24615807	1225	84668											
CRYBA4	1413	broad.mit.edu	37	chr22	27026480	27026480	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcacggaggagcgcatgCgtgcttatctgcaatggagg	17	9	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27026480	A	A	27026480	1	1	78	0	1	0	0	0	0	0	0	0	3941	783	27	3		3	CRYBA4	22	27026480	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	337721	27026480	24278086	1226	84669											
KREMEN1	83999	broad.mit.edu	37	chr22	29538223	29538223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgcctcggcctcttcgGggaaaccctcctcctacaga	8	18	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29538223	T	T	29538223	1	4	78	0	1	0	0	0	0	0	0	0	8513	1247	43	2		2	KREMEN1	22	29538223	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2511743	29538223	21766343	1227	84670											
APOBEC3F	200316	broad.mit.edu	37	chr22	39441663	39441663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccccctgcctgccctcatGgttacacccctcacccacac	5	22	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39441663	T	T	39441663	1	4	78	0	1	0	0	0	0	0	0	0	795	1363	47	2		2	APOBEC3F	22	39441663	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	9903440	39441663	11862903	1228	84671											
CACNA1I	8911	broad.mit.edu	37	chr22	40075698	40075698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccggctgataatcccgcCtgtccccaccccgtccccgt	8	21	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40075698	A	A	40075698	1	1	78	0	1	0	0	0	0	0	0	0	2572	696	24	2		2	CACNA1I	22	40075698	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	634035	40075698	11228868	1229	84672											
PMM1	5372	broad.mit.edu	37	chr22	41974850	41974850	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgccagcaaactctgttttCagggcttccacgaacttctc	7	13	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41974850	T	T	41974850	2	4	78	1	0	0	0	0	0	0	0	1	12231	813	29	4		4	PMM1	22	41974850	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1899152	41974850	9329716	1230	84673											
SMC1B	27127	broad.mit.edu	37	chr22	45804819	45804819	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacattattcattcttaatGataaaaagccctacccagag	4	9	2	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45804819	A	A	45804819	1	1	78	0	1	0	0	0	0	0	0	0	14896	1305	45	4		4	SMC1B	22	45804819	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3829969	45804819	5499747	1231	84674											
ZBED4	9889	broad.mit.edu	37	chr22	50278348	50278348	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaggagaacgggggcacGggcatcccgccactgtactc	14	13	0	1	rs143242906		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50278348	T	T	50278348	2	4	78	1	0	0	0	0	0	0	0	1	17646	1103	39	1		1	ZBED4	22	50278348	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4473529	50278348	1026218	1232	84675											
PLXNB2	23654	broad.mit.edu	37	chr22	50721207	50721207	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtaggtgaagaagatgcCggggttgggcacgggggacc	21	7	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50721207	T	T	50721207	3	4	78	1	0	0	0	0	1	0	0	0	12219	652	23	4	2676	4	PLXNB2	22	50721207	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	442859	50721207	583359	1233	84676											
SBF1	6305	broad.mit.edu	37	chr22	50898324	50898325	+	Intron	INS	-	G	G													ggcccaggcccacagcgggcINSagggaagacacccagtcacg							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50898325	G	G	50898324	6	5	78	0	1	1	1	0	0	0	0	0	13970	725	25	0		0	SBF1	22	50898324	Intron	INS	-	TCGA-17-Z049-01A-01W-0746-08	177117	50898324	406242	1234	84677	385	2									
SBF1	6305	broad.mit.edu	37	chr22	50898331	50898331	+	Intron	SNP	G	A	A													ggcccacagcgggcagggaaGacacccagtcacgtgtccac							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50898331	A	A	50898331	1	1	78	0	1	0	0	0	0	0	0	0	13970	957	33	4		4	SBF1	22	50898331	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	7	50898331	406235	1235	84678	385	2									
LMF2	91289	broad.mit.edu	37	chr22	50944120	50944120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtggccgtcttcttgCggctgccgtggccaggctca	14	14	3	0	rs113089468	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50944120	A	A	50944120	3	1	78	1	0	0	0	0	1	0	0	0	8920	768	27	3	1260	3	LMF2	22	50944120	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	45789	50944120	360446	1236	84679											
ZBED1	9189	broad.mit.edu	37	chrX	2408890	2408890	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccggggagacagacagGgtgccggggcagctccgctt	17	13	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2408890	A	A	2408890	1	1	78	0	1	0	0	0	0	0	0	0	17644	1247	43	4		4	ZBED1	23	2408890	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08		2408890	152861670	1237	84680											
FAM9B	171483	broad.mit.edu	37	chrX	8997491	8997491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataagtaacacggtcatacGtcatagagagatgaaaaatt	8	5	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8997491	T	T	8997491	1	4	78	0	1	0	0	0	0	0	0	0	5717	1160	40	3		3	FAM9B	23	8997491	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6588601	8997491	146273069	1238	84681											
TBL1X	6907	broad.mit.edu	37	chrX	9677195	9677195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccgaagaccttctgcaGcgccggtggcgcgctgctgc	15	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9677195	T	T	9677195	1	4	78	0	1	0	0	0	0	0	0	0	15761	986	34	3		3	TBL1X	23	9677195	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	679704	9677195	145593365	1239	84682											
MAP3K15	389840	broad.mit.edu	37	chrX	19418911	19418911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatggaacaatcgatcccCtccttgatttgacgtggtac	9	11	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19418911	A	A	19418911	1	1	78	0	1	0	0	0	0	0	0	0	9341	696	24	2		2	MAP3K15	23	19418911	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	9741716	19418911	135851649	1240	84683											
SH3KBP1	30011	broad.mit.edu	37	chrX	19663436	19663436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaagctatcaaggttataTagggatttctaaaaaacatt	6	5	2	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19663436	A	A	19663436	1	1	78	0	1	0	0	0	0	0	0	0	14368	1421	49	5		5	SH3KBP1	23	19663436	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	244525	19663436	135607124	1241	84684											
MAGEB18	286514	broad.mit.edu	37	chrX	26158064	26158064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccagagctgcagccaGggctcatactgctgccatgg	12	14	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26158064	T	T	26158064	3	4	78	1	0	0	0	0	1	0	0	0	9267	1000	35	2	964	2	MAGEB18	23	26158064	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6494628	26158064	129112496	1242	84685											
MAGEB10	139422	broad.mit.edu	37	chrX	27839660	27839660	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgctacagctgcttcacaCacaagacatcccgaaggagt	8	13	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27839660	T	T	27839660	2	4	78	1	0	0	0	0	0	0	0	1	9265	477	17	4		4	MAGEB10	23	27839660	Silent	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1681596	27839660	127430900	1243	84686											
EFHC2	80258	broad.mit.edu	37	chrX	44109566	44109566	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatgagttctctacggtcTccaaacattgagactgagtc	10	9	2	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44109566	C	C	44109566	2	2	78	1	0	0	0	0	0	0	0	1	4987	1538	54	5		5	EFHC2	23	44109566	Silent	SNP	T	TCGA-17-Z049-01A-01W-0746-08	16269906	44109566	111160994	1244	84687											
GATA1	2623	broad.mit.edu	37	chrX	48650074	48650074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcagaggccacactgacCagtgggggtcaggatccagg	15	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48650074	A	A	48650074	1	1	78	0	1	0	0	0	0	0	0	0	6315	609	21	2		2	GATA1	23	48650074	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	4540508	48650074	106620486	1245	84688											
DGKK	139189	broad.mit.edu	37	chrX	50122861	50122861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcttcatgccttcctccCatgagctgtgaggatcacag	8	13	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50122861	A	A	50122861	1	1	78	0	1	0	0	0	0	0	0	0	4512	609	21	2		2	DGKK	23	50122861	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1472787	50122861	105147699	1246	84689											
SHROOM4	57477	broad.mit.edu	37	chrX	50351111	50351111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctcggtagcttgacaagtCcagtgctgggttctcaaggc	13	10	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50351111	A	A	50351111	3	1	78	1	0	0	0	0	1	0	0	0	14409	855	30	3	1466	3	SHROOM4	23	50351111	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	228250	50351111	104919449	1247	84690											
SMC1A	8243	broad.mit.edu	37	chrX	53407465	53407465	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccccacctcctttcccctCcactgcagccttcctttcct	2	23	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53407465	A	A	53407465	1	1	78	0	1	0	0	0	0	0	0	0	14895	870	30	3		3	SMC1A	23	53407465	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	3056354	53407465	101863095	1248	84691											
FGD1	2245	broad.mit.edu	37	chrX	54475766	54475766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagtccagccagcccttGttcctgctccaacgcttgga	9	17	0	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54475766	T	T	54475766	1	4	78	0	1	0	0	0	0	0	0	0	5889	1392	48	3		3	FGD1	23	54475766	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	1068301	54475766	100794794	1249	84692											
VSIG4	11326	broad.mit.edu	37	chrX	65242095	65242095	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagcagatcctggcctaaTggggcatttttaacagacac	10	10	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65242095	G	G	65242095	1	3	78	0	1	0	0	0	0	0	0	0	17352	1479	51	5		5	VSIG4	23	65242095	3'UTR	SNP	T	TCGA-17-Z049-01A-01W-0746-08	10766329	65242095	90028465	1250	84693											
TBX22	50945	broad.mit.edu	37	chrX	79282178	79282178	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactgaagccagtttttctaAcagcattgatcatttctcct	6	10	3	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79282178	T	T	79282178	1	4	78	0	1	0	0	0	0	0	0	0	15780	58	2	5		5	TBX22	23	79282178	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	14040083	79282178	75988382	1251	84694											
TBX22	50945	broad.mit.edu	37	chrX	79285952	79285952	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactaatattgcaggaacaTcaaatgtcaagttcattatt	5	6	3	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79285952	G	G	79285952	1	3	78	0	1	0	0	0	0	0	0	0	15780	1450	50	5		5	TBX22	23	79285952	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3774	79285952	75984608	1252	84695											
DACH2	117154	broad.mit.edu	37	chrX	85415945	85415945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtcagttggaccagatGgtggtaggatgtagtccaga	15	6	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85415945	T	T	85415945	1	4	78	0	1	0	0	0	0	0	0	0	4254	1363	47	2		2	DACH2	23	85415945	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	6129993	85415945	69854615	1253	84696											
COL4A5	1287	broad.mit.edu	37	chrX	107908721	107908721	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttctttcatttttaaattGagctctttactctaggaacc	4	8	4	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107908721	A	A	107908721	1	1	78	0	1	0	0	0	0	0	0	0	3726	1305	45	4		4	COL4A5	23	107908721	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	22492776	107908721	47361839	1254	84697											
PAK3	5063	broad.mit.edu	37	chrX	110416338	110416338	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttatttgaaatataaaaAgatgagtacaagcaacatac	6	4	0	3			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110416338	G	G	110416338	1	3	78	0	1	0	0	0	0	0	0	0	11496	87	3	5		5	PAK3	23	110416338	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	2507617	110416338	44854222	1255	84698											
HTR2C	3358	broad.mit.edu	37	chrX	114010216	114010216	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagataggatggctgcctgGacagctgcaccataagcaac	11	12	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114010216	T	T	114010216	1	4	78	0	1	0	0	0	0	0	0	0	7513	1189	41	3		3	HTR2C	23	114010216	Intron	SNP	G	TCGA-17-Z049-01A-01W-0746-08	3593878	114010216	41260344	1256	84699											
FAM70A	55026	broad.mit.edu	37	chrX	119427944	119427945	+	Intron	DNP	CA	GG	GG													atacatagtatgtgggatgaCagtcaggctgaccacacaat							TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	119427945	GG	GG	119427944	1	3	78	0	1	0	0	0	0	0	0	0	5656	493	17	4		4	FAM70A	23	119427944	Intron	DNP	CA	TCGA-17-Z049-01A-01W-0746-08	5417728	119427944	35842616	1257	84700											
ODZ1	10178	broad.mit.edu	37	chrX	123785936	123785936	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcccttggagtcctgcttGaccagctgtttgccatccat	10	13	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123785936	T	T	123785936	2	4	78	1	0	0	0	0	0	0	0	1	10929	1277	45	3		3	ODZ1	23	123785936	Silent	SNP	G	TCGA-17-Z049-01A-01W-0746-08	4357992	123785936	31484624	1258	84701											
DDX26B	203522	broad.mit.edu	37	chrX	134706995	134706995	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagtttgtatttgtttgaaCttgtctgatacatttatgtc	7	4	1	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134706995	G	G	134706995	1	3	78	0	1	0	0	0	0	0	0	0	4386	580	20	4		4	DDX26B	23	134706995	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	10921059	134706995	20563565	1259	84702											
ARHGEF6	9459	broad.mit.edu	37	chrX	135795422	135795422	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttagtgagggatttaaaAtaaacatcttacttgttatt	6	4	1	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135795422	G	G	135795422	1	3	78	0	1	0	0	0	0	0	0	0	912	116	4	5		5	ARHGEF6	23	135795422	Intron	SNP	A	TCGA-17-Z049-01A-01W-0746-08	1088427	135795422	19475138	1260	84703											
FGF13	2258	broad.mit.edu	37	chrX	137790836	137790836	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catattcaacttcctttaggTtaacctgtgtaaacaggatt	6	8	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137790836	G	G	137790836	1	3	78	0	1	0	0	0	0	0	0	0	5899	1740	60	5		5	FGF13	23	137790836	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	1995414	137790836	17479724	1261	84704											
UBE2NL	389898	broad.mit.edu	37	chrX	142967530	142967530	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacagttctgctatcgatcCaggccttgttaaatgctccc	8	13	1	0			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142967530	G	G	142967530	3	3	78	1	0	0	0	0	1	0	0	0	16993	595	21	4	330	4	UBE2NL	23	142967530	Missense_Mutation	SNP	C	TCGA-17-Z049-01A-01W-0746-08	5176694	142967530	12303030	1262	84705											
SPANXN1	494118	broad.mit.edu	37	chrX	144337425	144337425	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgaagacctagacttaCctgaaggcctagactcagct	10	10	1	5			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144337425	A	A	144337425	1	1	78	0	1	0	0	0	0	0	0	0	15106	522	18	3		3	SPANXN1	23	144337425	3'UTR	SNP	C	TCGA-17-Z049-01A-01W-0746-08	1369895	144337425	10933135	1263	84706											
AFF2	2334	broad.mit.edu	37	chrX	148037047	148037047	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcacttgacatccaaagcTtttagtagtagtctctgtac	7	9	2	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148037047	A	A	148037047	1	1	78	0	1	0	0	0	0	0	0	0	357	1624	56	5		5	AFF2	23	148037047	Intron	SNP	T	TCGA-17-Z049-01A-01W-0746-08	3699622	148037047	7233513	1264	84707											
FATE1	89885	broad.mit.edu	37	chrX	150890113	150890113	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaccatgagtaccctggctCcctgcccatttggggcatcc	10	15	0	2			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150890113	T	T	150890113	1	4	78	0	1	0	0	0	0	0	0	0	5750	870	30	4		4	FATE1	23	150890113	Intron	SNP	C	TCGA-17-Z049-01A-01W-0746-08	2853066	150890113	4380447	1265	84708											
CTAG2	30848	broad.mit.edu	37	chrX	153880837	153880837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcgggggagaggtgcgGcatcccgggacaggatcctg	19	10	0	1			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153880837	T	T	153880837	3	4	78	1	0	0	0	0	1	0	0	0	4025	1203	42	3	437	3	CTAG2	23	153880837	Missense_Mutation	SNP	G	TCGA-17-Z049-01A-01W-0746-08	2990724	153880837	1389723	1266	84709											
CHD5	26038	broad.mit.edu	37	chr1	6202265	6202265	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctcccgaatcaccgagcGgctctccttgtcccccgtgt	9	17	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6202265	A	A	6202265	3	1	79	1	0	0	0	0	1	0	0	0	3359	1116	39	4	3613	4	CHD5	1	6202265	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08		6202265	243048356	1	84710											
PLEKHG5	57449	broad.mit.edu	37	chr1	6529654	6529654	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccacgagcaggggtggcCtgatgaccctggtcctctct	13	13	1	2	rs144245744		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6529654	T	T	6529654	3	4	79	1	0	0	0	0	1	0	0	0	12168	681	24	4	1157	4	PLEKHG5	1	6529654	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	327389	6529654	242720967	2	84711											
RERE	473	broad.mit.edu	37	chr1	8416207	8416207	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcgtgtgggggctgtccaAgcagagggttggggagagtg	21	6	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8416207	C	C	8416207	3	2	79	1	0	0	0	0	1	0	0	0	13339	72	3	5	273	5	RERE	1	8416207	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	1886553	8416207	240834414	3	84712											
EPHA8	2046	broad.mit.edu	37	chr1	22927468	22927468	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccctgcaccagctcatgctCgactgttggcacaaggaccg	11	15	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22927468	T	T	22927468	2	4	79	1	0	0	0	0	0	0	0	1	5215	871	31	4		4	EPHA8	1	22927468	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	14511261	22927468	226323153	4	84713											
EIF2C3	192669	broad.mit.edu	37	chr1	36411406	36411406	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagttgaaatcccaaagattGatgtctacctctatgaggta	8	7	2	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36411406	A	A	36411406	3	1	79	1	0	0	0	0	1	0	0	0	5047	1290	45	4	139	4	EIF2C3	1	36411406	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	13483938	36411406	212839215	5	84714											
MACF1	23499	broad.mit.edu	37	chr1	39844653	39844653	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcccatgtttagcattTtaaggtatacatctgagtat	7	6	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39844653	G	G	39844653	1	3	79	0	1	0	0	0	0	0	0	0	9232	1856	64	5		5	MACF1	1	39844653	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	3433247	39844653	209405968	6	84715											
MAST2	23139	broad.mit.edu	37	chr1	46313003	46313003	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atactgttatgtaactcaatCtgctccaactcactgctaaa	4	11	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46313003	G	G	46313003	1	3	79	0	1	0	0	0	0	0	0	0	9417	928	32	4		4	MAST2	1	46313003	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6468350	46313003	202937618	7	84716											
SLC5A9	200010	broad.mit.edu	37	chr1	48703325	48703325	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcccacccgagtgtgccTcagtgccctgtgctctctct	9	17	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48703325	C	C	48703325	1	2	79	0	1	0	0	0	0	0	0	0	14786	1566	54	5		5	SLC5A9	1	48703325	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	2390322	48703325	200547296	8	84717											
PRKAA2	5563	broad.mit.edu	37	chr1	57158028	57158028	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtttcttttgtgcttgaTaggttgaagagatggaagcc	13	5	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57158028	C	C	57158028	1	2	79	0	1	0	0	0	0	0	0	0	12600	1421	49	5		5	PRKAA2	1	57158028	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	8454703	57158028	192092593	9	84718											
OMA1	115209	broad.mit.edu	37	chr1	58946616	58946616	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaacattcttcatatatcTtgtgtctcataaattttaat	3	7	4	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58946616	C	C	58946616	1	2	79	0	1	0	0	0	0	0	0	0	10958	1624	56	5		5	OMA1	1	58946616	3'UTR	SNP	T	TCGA-17-Z050-01A-01W-0747-08	1788588	58946616	190304005	10	84719											
FPGT	8790	broad.mit.edu	37	chr1	74670318	74670318	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttagctcatccttctaGtttgacgataggtaccacac	7	11	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74670318	A	A	74670318	3	1	79	1	0	0	0	0	1	0	0	0	6097	1029	36	4	601	4	FPGT	1	74670318	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	15723702	74670318	174580303	11	84720											
TNNI3K	51086	broad.mit.edu	37	chr1	74801868	74801868	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaagacctttgctatcaTttgctttatgtatacctttt	4	7	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74801868	C	C	74801868	1	2	79	0	1	0	0	0	0	0	0	0	16452	1508	52	5		5	TNNI3K	1	74801868	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	131550	74801868	174448753	12	84721											
SLC44A5	204962	broad.mit.edu	37	chr1	75680262	75680262	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggttcactacattgttaAattacattgtgcagcctgat	7	8	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75680262	G	G	75680262	1	3	79	0	1	0	0	0	0	0	0	0	14753	29	1	5		5	SLC44A5	1	75680262	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	878394	75680262	173570359	13	84722											
SLC44A5	204962	broad.mit.edu	37	chr1	75707844	75707844	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatttaactccataatAatctccttatttcaaattac	0	8	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75707844	T	T	75707844	1	4	79	0	1	0	0	0	0	0	0	0	14753	377	13	5		5	SLC44A5	1	75707844	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	27582	75707844	173542777	14	84723											
SLC44A5	204962	broad.mit.edu	37	chr1	75716951	75716951	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggactggtacagcgtaacaGgttaaagtaaaacaaaatgg	12	5	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75716951	A	A	75716951	2	1	79	1	0	0	0	0	0	0	0	1	14753	991	35	4		4	SLC44A5	1	75716951	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	9107	75716951	173533670	15	84724											
SPATA1	64173	broad.mit.edu	37	chr1	84999387	84999387	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaacctgtcatttcctTtaagtcagtgtctttgggaa	7	8	4	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84999387	G	G	84999387	1	3	79	0	1	0	0	0	0	0	0	0	15114	1856	64	5		5	SPATA1	1	84999387	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	9282436	84999387	164251234	16	84725											
GBP4	115361	broad.mit.edu	37	chr1	89654558	89654558	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatcctcttggaagaagtaGtctgaaggcctcagagtgga	13	7	3	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89654558	A	A	89654558	1	1	79	0	1	0	0	0	0	0	0	0	6338	1044	36	4		4	GBP4	1	89654558	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4655171	89654558	159596063	17	84726											
COL11A1	1301	broad.mit.edu	37	chr1	103427478	103427478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagtccaggtgcaccctGggaaaagtgaaaaaaataaa	9	7	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103427478	T	T	103427478	1	4	79	0	1	0	0	0	0	0	0	0	3699	1363	47	2		2	COL11A1	1	103427478	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	13772920	103427478	145823143	18	84727											
EPS8L3	79574	broad.mit.edu	37	chr1	110293388	110293388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaagtagctggctccccGtcagggacccaagtgtcctc	12	14	1	0	rs145677992	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110293388	A	A	110293388	3	1	79	1	0	0	0	0	1	0	0	0	5239	1145	40	4	125	4	EPS8L3	1	110293388	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	6865910	110293388	138957233	19	84728											
TTF2	8458	broad.mit.edu	37	chr1	117638684	117638684	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacatttgatagctaacCttaagaatgatgagggcatt	9	6	1	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117638684	G	G	117638684	1	3	79	0	1	0	0	0	0	0	0	0	16845	696	24	4		4	TTF2	1	117638684	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	7345296	117638684	131611937	20	84729											
NBPF10	100132406	broad.mit.edu	37	chr1	145522506	145522506	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactgacccttttgctctgTgtatcaggtactatttgttt	7	8	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145522506	C	C	145522506	1	2	79	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145522506	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	27883822	145522506	103728115	21	84730											
BCL9	607	broad.mit.edu	37	chr1	147094256	147094256	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgttataccatgatgctatCaagactgtggccagctcaga	9	11	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147094256	G	G	147094256	3	3	79	1	0	0	0	0	1	0	0	0	1386	816	29	4	3109	4	BCL9	1	147094256	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1571750	147094256	102156365	22	84731											
ARNT	405	broad.mit.edu	37	chr1	150785818	150785819	+	Intron	INS	-	A	A													tgtccagtctcaggagctagINSaaatacagcaaggaagaata							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150785819	A	A	150785818	6	5	79	0	1	1	1	0	0	0	0	0	969	957	33	0		0	ARNT	1	150785818	Intron	INS	-	TCGA-17-Z050-01A-01W-0747-08	3691562	150785818	98464803	23	84732											
SEMA6C	10500	broad.mit.edu	37	chr1	151111935	151111935	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacagcacagttctccacaTcttggcttctccatgttaga	7	12	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151111935	A	A	151111935	3	1	79	1	0	0	0	0	1	0	0	0	14154	1435	50	5	2628	5	SEMA6C	1	151111935	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	326117	151111935	98138686	24	84733											
FLG2	388698	broad.mit.edu	37	chr1	152328427	152328427	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cataactagactgacctgatCtagactcatgttgtccaaag	7	10	2	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152328427	G	G	152328427	3	3	79	1	0	0	0	0	1	0	0	0	5980	913	32	4	5344	4	FLG2	1	152328427	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1216492	152328427	96922194	25	84734											
LCE1C	353133	broad.mit.edu	37	chr1	152777925	152777925	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacttgggagggggctgGcactgctgctggctctgctg	18	10	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152777925	A	A	152777925	2	1	79	1	0	0	0	0	0	0	0	1	8733	1195	42	4		4	LCE1C	1	152777925	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	449498	152777925	96472696	26	84735											
CD5L	922	broad.mit.edu	37	chr1	157805761	157805761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctctttttctgctggtggCtcatacaaaataccactagg	8	10	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157805761	A	A	157805761	3	1	79	1	0	0	0	0	1	0	0	0	3057	796	28	3	819	3	CD5L	1	157805761	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5027836	157805761	91444860	27	84736											
SPTA1	6708	broad.mit.edu	37	chr1	158597593	158597593	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattcagactcacgggtctAttattccctagggttgattc	8	9	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158597593	T	T	158597593	1	4	79	0	1	0	0	0	0	0	0	0	15234	464	16	5		5	SPTA1	1	158597593	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	791832	158597593	90653028	28	84737											
SPTA1	6708	broad.mit.edu	37	chr1	158622997	158622997	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taacagatgcagggtcatgaGaagaaatgcctttggcgaaa	12	6	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158622997	A	A	158622997	1	1	79	0	1	0	0	0	0	0	0	0	15234	957	33	4		4	SPTA1	1	158622997	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	25404	158622997	90627624	29	84738											
CD247	919	broad.mit.edu	37	chr1	167400751	167400751	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagagtgcagggacaacAgtctgtgtgtgaaggtttgg	15	4	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167400751	C	C	167400751	1	2	79	0	1	0	0	0	0	0	0	0	3018	203	7	5		5	CD247	1	167400751	3'UTR	SNP	A	TCGA-17-Z050-01A-01W-0747-08	8777754	167400751	81849870	30	84739											
CACNA1E	777	broad.mit.edu	37	chr1	181741121	181741121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagacaagagcgaggatGgggaaattgggaaagaggac	17	6	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181741121	T	T	181741121	1	4	79	0	1	0	0	0	0	0	0	0	2568	1363	47	2		2	CACNA1E	1	181741121	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	14340370	181741121	67509500	31	84740											
RGS21	431704	broad.mit.edu	37	chr1	192312099	192312099	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgttcctgctgtcacattAccttcagcttgaagatcagt	7	10	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192312099	T	T	192312099	1	4	79	0	1	0	0	0	0	0	0	0	13413	406	14	5		5	RGS21	1	192312099	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	10570978	192312099	56938522	32	84741											
CFHR5	81494	broad.mit.edu	37	chr1	196965383	196965383	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatttatcattttgattggGattgtataaagtgtataaat	7	1	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196965383	T	T	196965383	1	4	79	0	1	0	0	0	0	0	0	0	3318	1189	41	3		3	CFHR5	1	196965383	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4653284	196965383	52285238	33	84742											
ASPM	259266	broad.mit.edu	37	chr1	197074076	197074076	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgattgcattttacgttgCttccattttctgaacataga	7	7	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197074076	T	T	197074076	2	4	79	1	0	0	0	0	0	0	0	1	1060	796	28	4		4	ASPM	1	197074076	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	108693	197074076	52176545	34	84743											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200818276	200818276	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccttactgtagtgaaaaaGaaaggggatgggatatctcc	11	6	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200818276	C	C	200818276	3	2	79	1	0	0	0	0	1	0	0	0	2638	933	33	4	2421	4	CAMSAP1L1	1	200818276	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3744200	200818276	48432345	35	84744											
CACNA1S	779	broad.mit.edu	37	chr1	201042896	201042896	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaggaggagtggcatcaGcccccaaatgggaagggcag	16	9	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201042896	A	A	201042896	1	1	79	0	1	0	0	0	0	0	0	0	2573	986	34	4		4	CACNA1S	1	201042896	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	224620	201042896	48207725	36	84745											
NFASC	23114	broad.mit.edu	37	chr1	204981790	204981790	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaaaaacaagggaggcgtgGatggtgccttgttaaaaaag	14	5	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204981790	C	C	204981790	1	2	79	0	1	0	0	0	0	0	0	0	10454	1189	41	4		4	NFASC	1	204981790	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3938894	204981790	44268831	37	84746											
CR2	1380	broad.mit.edu	37	chr1	207648401	207648401	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctgccctaatccagaagtCaaacatgggtacaagctcaa	8	12	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207648401	T	T	207648401	2	4	79	1	0	0	0	0	0	0	0	1	3874	813	29	4		4	CR2	1	207648401	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2666611	207648401	41602220	38	84747											
KCNH1	3756	broad.mit.edu	37	chr1	211092862	211092862	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaactgtaagcctagtcttAaaaaaactcttccttgtttt	5	8	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211092862	T	T	211092862	1	4	79	0	1	0	0	0	0	0	0	0	8101	377	13	5		5	KCNH1	1	211092862	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	3444461	211092862	38157759	39	84748											
TRAF5	7188	broad.mit.edu	37	chr1	211529716	211529716	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttatcttttaggtttttaAagacaattgttgcaaaagag	8	3	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211529716	C	C	211529716	3	2	79	1	0	0	0	0	1	0	0	0	16568	14	1	5	294	5	TRAF5	1	211529716	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	436854	211529716	37720905	40	84749											
PROX1	5629	broad.mit.edu	37	chr1	214171712	214171712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtatcttcttaagaagGcaacctttcccattattcaa	4	9	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214171712	T	T	214171712	1	4	79	0	1	0	0	0	0	0	0	0	12666	1218	42	3		3	PROX1	1	214171712	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2641996	214171712	35078909	41	84750											
USH2A	7399	broad.mit.edu	37	chr1	216375039	216375039	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgctggtgttgtggggggCaccttgggcactgactcagg	17	10	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216375039	T	T	216375039	1	4	79	0	1	0	0	0	0	0	0	0	17162	725	25	4		4	USH2A	1	216375039	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2203327	216375039	32875582	42	84751											
USH2A	7399	broad.mit.edu	37	chr1	216462837	216462837	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaaagactgtattcctttGagggaattctataattttcg	7	5	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216462837	A	A	216462837	1	1	79	0	1	0	0	0	0	0	0	0	17162	1305	45	4		4	USH2A	1	216462837	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	87798	216462837	32787784	43	84752											
DUSP10	11221	broad.mit.edu	37	chr1	221875743	221875743	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagcagcaatcctttccatCcagaccattgtcacacaacc	5	15	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221875743	A	A	221875743	1	1	79	0	1	0	0	0	0	0	0	0	4850	870	30	3		3	DUSP10	1	221875743	3'UTR	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5412906	221875743	27374878	44	84753											
RBM34	23029	broad.mit.edu	37	chr1	235316089	235316089	+	Intron	DEL	A	-	-													cgacttcagcttctaaaattAaaaaaaaaaatacacattag							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	235316089	-	-	235316089	6	5	79	0	1	1	0	1	0	0	0	0	13239	377	13	0		0	RBM34	1	235316089	Intron	DEL	A	TCGA-17-Z050-01A-01W-0747-08	13440346	235316089	13934532	45	84754											
KMO	8564	broad.mit.edu	37	chr1	241732005	241732005	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgggtcagtctcagctaaCaagtcttacgtaaaaaatat	7	8	4	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241732005	G	G	241732005	1	3	79	0	1	0	0	0	0	0	0	0	8495	493	17	4		4	KMO	1	241732005	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6415916	241732005	7518616	46	84755											
NLRP3	114548	broad.mit.edu	37	chr1	247586536	247586536	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttttcccttttaggttcAgataatgcacgtgtttcgaa	7	7	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247586536	C	C	247586536	2	2	79	1	0	0	0	0	0	0	0	1	10573	175	7	5		5	NLRP3	1	247586536	Silent	SNP	A	TCGA-17-Z050-01A-01W-0747-08	5854531	247586536	1664085	47	84756											
OR1C1	26188	broad.mit.edu	37	chr1	247920884	247920884	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccattgaatacatgatGgttgacagagtgtcgctctc	10	10	1	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247920884	T	T	247920884	2	4	79	1	0	0	0	0	0	0	0	1	11046	1335	47	2		2	OR1C1	1	247920884	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	334348	247920884	1329737	48	84757											
TRIM58	25893	broad.mit.edu	37	chr1	248028109	248028109	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgaggcggctggaggcgGaggagcgagcgacgctgcag	21	9	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248028109	T	T	248028109	4	4	79	1	0	0	0	0	0	1	0	0	16656	1175	41	3	629	3	TRIM58	1	248028109	Nonsense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	107225	248028109	1222512	49	84758											
OR2T33	391195	broad.mit.edu	37	chr1	248436666	248436666	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggagcccgtcagctgCacccaggagccaacacgaca	11	16	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436666	T	T	248436666	3	4	79	1	0	0	0	0	1	0	0	0	11118	710	25	4	514	4	OR2T33	1	248436666	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	408557	248436666	813955	50	84759											
MYT1L	23040	broad.mit.edu	37	chr2	1926035	1926035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgttttcatgaggcaaCttacgttaggtagaaatatt	8	6	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1926035	A	A	1926035	1	1	79	0	1	0	0	0	0	0	0	0	10201	580	20	3		3	MYT1L	2	1926035	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08		1926035	241273338	51	84760											
RNF144A	9781	broad.mit.edu	37	chr2	7164554	7164554	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaagcgctgccccaagtgCaaagtctacatcgagcgaga	10	12	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7164554	T	T	7164554	2	4	79	1	0	0	0	0	0	0	0	1	13556	718	25	4		4	RNF144A	2	7164554	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5238519	7164554	236034819	52	84761											
KIDINS220	57498	broad.mit.edu	37	chr2	8930278	8930278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagttttcacattttcaatGtaaacatttattggacactt	5	7	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8930278	A	A	8930278	1	1	79	0	1	0	0	0	0	0	0	0	8341	1392	48	4		4	KIDINS220	2	8930278	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1765724	8930278	234269095	53	84762											
APOB	338	broad.mit.edu	37	chr2	21257726	21257726	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgatctttggtgtgtctTcaagtttcaaagtctgtgtc	10	6	5	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21257726	C	C	21257726	3	2	79	1	0	0	0	0	1	0	0	0	787	1783	62	5	12913	5	APOB	2	21257726	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	12327448	21257726	221941647	54	84763											
CAD	790	broad.mit.edu	37	chr2	27445613	27445613	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaattgctaaaagtcagtAggagttgcagtgaagaagat	11	5	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27445613	T	T	27445613	1	4	79	0	1	0	0	0	0	0	0	0	2591	435	15	5		5	CAD	2	27445613	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	6187887	27445613	215753760	55	84764											
LTBP1	4052	broad.mit.edu	37	chr2	33614353	33614353	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtatactccagaagccgAtccctacttcatccaagacc	5	15	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33614353	T	T	33614353	3	4	79	1	0	0	0	0	1	0	0	0	9160	333	12	5	4995	5	LTBP1	2	33614353	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	6168740	33614353	209585020	56	84765											
HEATR5B	54497	broad.mit.edu	37	chr2	37287708	37287708	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataatattgtgaagcacaaTcctttcagttcttaccacat	4	10	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37287708	A	A	37287708	1	1	79	0	1	0	0	0	0	0	0	0	7099	1450	50	5		5	HEATR5B	2	37287708	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	3673355	37287708	205911665	57	84766											
HEATR5B	54497	broad.mit.edu	37	chr2	37299194	37299194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatccattacactgacttgCctatatgcaataactaatta	3	9	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37299194	A	A	37299194	1	1	79	0	1	0	0	0	0	0	0	0	7099	754	26	3		3	HEATR5B	2	37299194	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	11486	37299194	205900179	58	84767											
SOS1	6654	broad.mit.edu	37	chr2	39240990	39240990	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgataaagacttatttacttCatttatttaatgcttaccgc	4	7	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39240990	T	T	39240990	1	4	79	0	1	0	0	0	0	0	0	0	15050	841	29	4		4	SOS1	2	39240990	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1941796	39240990	203958383	59	84768											
NRXN1	9378	broad.mit.edu	37	chr2	51254610	51254610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagccccgcccaggccccGgcccccgtgggtcgggcgtc	15	21	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51254610	T	T	51254610	1	4	79	0	1	0	0	0	0	0	0	0	10760	1131	39	1		1	NRXN1	2	51254610	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	12013620	51254610	191944763	60	84769											
BCL11A	53335	broad.mit.edu	37	chr2	60688844	60688844	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacttgtagggcttctcGcccgtgtggctgcgccggtg	15	12	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60688844	A	A	60688844	2	1	79	1	0	0	0	0	0	0	0	1	1368	1074	38	4		4	BCL11A	2	60688844	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	9434234	60688844	182510529	61	84770											
USP34	9736	broad.mit.edu	37	chr2	61577741	61577741	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggctcaagagctgagaccaGattaagtagatgtctaagtg	12	6	2	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61577741	A	A	61577741	2	1	79	1	0	0	0	0	0	0	0	1	17192	933	33	4		4	USP34	2	61577741	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	888897	61577741	181621632	62	84771											
TGFA	7039	broad.mit.edu	37	chr2	70741944	70741944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacacagcagcaggcccGctcccttcccacacacgatc	7	20	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70741944	T	T	70741944	1	4	79	0	1	0	0	0	0	0	0	0	15938	1102	38	3		3	TGFA	2	70741944	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	9164203	70741944	172457429	63	84772											
SLC4A5	57835	broad.mit.edu	37	chr2	74477526	74477526	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtgatcgcgttggtgaTacagccgaggtagatgaata	14	5	0	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74477526	C	C	74477526	3	2	79	1	0	0	0	0	1	0	0	0	14771	1406	49	5	1876	5	SLC4A5	2	74477526	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	3735582	74477526	168721847	64	84773											
C2orf65	130951	broad.mit.edu	37	chr2	74855703	74855703	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caatcaaaagattcttgattCagcttctgacacagttttat	5	8	4	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74855703	T	T	74855703	1	4	79	0	1	0	0	0	0	0	0	0	2206	841	29	4		4	C2orf65	2	74855703	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	378177	74855703	168343670	65	84774											
ANKRD36B	57730	broad.mit.edu	37	chr2	98129748	98129748	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctatattgctcttctgtTattcttaacttttccctaac	2	11	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98129748	G	G	98129748	2	3	79	1	0	0	0	0	0	0	0	1	666	1744	61	5		5	ANKRD36B	2	98129748	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	23274045	98129748	145069625	66	84775											
VWA3B	200403	broad.mit.edu	37	chr2	98737721	98737721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttggcatcccagtagcaCtgatcactgcccagtgacca	10	13	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98737721	T	T	98737721	1	4	79	0	1	0	0	0	0	0	0	0	17368	580	20	4		4	VWA3B	2	98737721	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	607973	98737721	144461652	67	84776											
UXS1	80146	broad.mit.edu	37	chr2	106761572	106761572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagtcaaacagcttacCctcaggaatcccgcagctct	8	14	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106761572	T	T	106761572	1	4	79	0	1	0	0	0	0	0	0	0	17236	638	22	4		4	UXS1	2	106761572	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	8023851	106761572	136437801	68	84777											
CNTNAP5	129684	broad.mit.edu	37	chr2	125417632	125417632	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaggaagaaaggaaggaagGaaggaaggaaggaaggaagg	20	0	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125417632	A	A	125417632	1	1	79	0	1	0	0	0	0	0	0	0	3682	1189	41	4		4	CNTNAP5	2	125417632	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	18656060	125417632	117781741	69	84778											
NCKAP5	344148	broad.mit.edu	37	chr2	133489353	133489353	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggctctgaagaggcctcatCcctctggcggtcatgatggg	14	12	4	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133489353	T	T	133489353	2	4	79	1	0	0	0	0	0	0	0	1	10318	842	30	4		4	NCKAP5	2	133489353	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	8071721	133489353	109710020	70	84779											
LRP1B	53353	broad.mit.edu	37	chr2	141115623	141115624	+	Frame_Shift_Ins	INS	-	T	T													tggagatccatagggatgcaINSttttttattactacaagcaa							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141115624	T	T	141115623	7	5	79	1	0	1	1	0	0	0	0	0	9042	217	8	0	2551	0	LRP1B	2	141115623	Frame_Shift_Ins	INS	-	TCGA-17-Z050-01A-01W-0747-08	7626270	141115623	102083750	71	84780											
LRP1B	53353	broad.mit.edu	37	chr2	141130658	141130658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgctggtatacactgacCattggaacaccggaactgat	9	9	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141130658	A	A	141130658	3	1	79	1	0	0	0	0	1	0	0	0	9042	594	21	2	3204	2	LRP1B	2	141130658	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	15035	141130658	102068715	72	84781											
ARL5A	26225	broad.mit.edu	37	chr2	152659849	152659851	+	Intron	DEL	AAC	-	-													ttggcacaatctataaagaaAacaaaatcatttgattaaat							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152659851	-	-	152659849	6	5	79	0	1	1	0	1	0	0	0	0	943	29	1	0		0	ARL5A	2	152659849	Intron	DEL	AAC	TCGA-17-Z050-01A-01W-0747-08	11529191	152659849	90539524	73	84782											
GALNT13	114805	broad.mit.edu	37	chr2	155157868	155157868	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttggcctaagcttcagttgCttcatctcatacaatattat	5	9	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155157868	G	G	155157868	1	3	79	0	1	0	0	0	0	0	0	0	6273	812	28	4		4	GALNT13	2	155157868	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2498019	155157868	88041505	74	84783											
DPP4	1803	broad.mit.edu	37	chr2	162877214	162877214	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaaactagaaaataatagaGaacaaaagaacattaaagca	5	5	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162877214	C	C	162877214	1	2	79	0	1	0	0	0	0	0	0	0	4769	957	33	4		4	DPP4	2	162877214	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	7719346	162877214	80322159	75	84784											
NOSTRIN	115677	broad.mit.edu	37	chr2	169718574	169718574	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaagggtaagaatcattctCaaatattttaattgccttcc	5	7	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169718574	G	G	169718574	1	3	79	0	1	0	0	0	0	0	0	0	10641	841	29	4		4	NOSTRIN	2	169718574	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6841360	169718574	73480799	76	84785											
MYO3B	140469	broad.mit.edu	37	chr2	171258115	171258115	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctgcggacgttcgagaCgccatgtccaaagccctgta	13	12	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171258115	T	T	171258115	2	4	79	1	0	0	0	0	0	0	0	1	10171	535	19	4		4	MYO3B	2	171258115	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1539541	171258115	71941258	77	84786											
RAPGEF4	11069	broad.mit.edu	37	chr2	173787114	173787114	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctaccaacaaagagagctCttgacccacattcaacagag	6	14	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173787114	G	G	173787114	1	3	79	0	1	0	0	0	0	0	0	0	13154	928	32	4		4	RAPGEF4	2	173787114	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2528999	173787114	69412259	78	84787											
CHRNA1	1134	broad.mit.edu	37	chr2	175618127	175618127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctaatgatgatggttcggGtcgatctgcctgtttgttag	12	7	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175618127	T	T	175618127	1	4	79	0	1	0	0	0	0	0	0	0	3412	1276	44	3		3	CHRNA1	2	175618127	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1831013	175618127	67581246	79	84788											
TTN	7273	broad.mit.edu	37	chr2	179393630	179393630	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttgaccttcgtttatgctCatctgagtagaaaatgcttt	7	8	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179393630	A	A	179393630	3	1	79	1	0	0	0	0	1	0	0	0	16861	826	29	3	1143	3	TTN	2	179393630	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3775503	179393630	63805743	80	84789											
TTN	7273	broad.mit.edu	37	chr2	179479523	179479523	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgttatcaagttcaagcAgatttaaggtcagaggccta	10	6	3	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179479523	G	G	179479523	1	3	79	0	1	0	0	0	0	0	0	0	16861	203	7	5		5	TTN	2	179479523	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	85893	179479523	63719850	81	84790											
TTN	7273	broad.mit.edu	37	chr2	179616666	179616666	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgatattctacttgcataTcttttagcagccatggattt	7	7	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179616666	C	C	179616666	2	2	79	1	0	0	0	0	0	0	0	1	16861	1432	50	5		5	TTN	2	179616666	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	137143	179616666	63582707	82	84791											
ITGA4	3676	broad.mit.edu	37	chr2	182395460	182395460	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtcaatgggtttgagctGtcacttcaataataagagag	10	6	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182395460	A	A	182395460	1	1	79	0	1	0	0	0	0	0	0	0	7948	1392	48	4		4	ITGA4	2	182395460	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2778794	182395460	60803913	83	84792											
ITGAV	3685	broad.mit.edu	37	chr2	187519311	187519311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtagaaagatgagatgtGggtgataataaaaatatgtc	12	1	0	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187519311	T	T	187519311	1	4	79	0	1	0	0	0	0	0	0	0	7958	1363	47	2		2	ITGAV	2	187519311	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	5123851	187519311	55680062	84	84793											
COL5A2	1290	broad.mit.edu	37	chr2	189904079	189904079	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagccatcggggctgcgcaTggtttcaatctgactactga	12	11	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189904079	C	C	189904079	3	2	79	1	0	0	0	0	1	0	0	0	3729	1464	51	5	671	5	COL5A2	2	189904079	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	2384768	189904079	53295294	85	84794											
SLC40A1	30061	broad.mit.edu	37	chr2	190444474	190444474	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagttggcttaatacaacTggctagaacgaaaggaaata	11	5	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190444474	A	A	190444474	1	1	79	0	1	0	0	0	0	0	0	0	14742	1595	55	5		5	SLC40A1	2	190444474	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	540395	190444474	52754899	86	84795											
STK17B	9262	broad.mit.edu	37	chr2	197002250	197002250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttttggaaaccatgctgCtatcctctgggatattctct	7	10	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197002250	A	A	197002250	3	1	79	1	0	0	0	0	1	0	0	0	15409	797	28	3	82	3	STK17B	2	197002250	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6557776	197002250	46197123	87	84796											
PGAP1	80055	broad.mit.edu	37	chr2	197738346	197738346	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaatataaaggtttactTgtatgttaaagtaaacatta	5	3	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197738346	A	A	197738346	1	1	79	0	1	0	0	0	0	0	0	0	11872	1827	63	5		5	PGAP1	2	197738346	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	736096	197738346	45461027	88	84797											
AOX1	316	broad.mit.edu	37	chr2	201464399	201464399	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctgcacacctgggatggtGatgtccatctacacgctgct	10	12	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201464399	A	A	201464399	2	1	79	1	0	0	0	0	0	0	0	1	731	1277	45	4		4	AOX1	2	201464399	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3726053	201464399	41734974	89	84798											
CASP10	843	broad.mit.edu	37	chr2	202074033	202074033	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacagccctgcagtgccctaGactggctgaaaaacctaaac	8	14	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202074033	C	C	202074033	3	2	79	1	0	0	0	0	1	0	0	0	2695	942	33	4	1193	4	CASP10	2	202074033	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	609634	202074033	41125340	90	84799											
CDK5R2	8941	broad.mit.edu	37	chr2	219825306	219825306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggacgagctggcgtcggCcgccgagctgcaggccgcct	18	14	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219825306	A	A	219825306	3	1	79	1	0	0	0	0	1	0	0	0	3174	739	26	3	766	3	CDK5R2	2	219825306	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	17751273	219825306	23374067	91	84800											
ANKMY1	51281	broad.mit.edu	37	chr2	241468860	241468860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcggaaccacagccccaCgtcctggctgccatcggggt	11	17	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241468860	T	T	241468860	3	4	79	1	0	0	0	0	1	0	0	0	634	536	19	4	2601	4	ANKMY1	2	241468860	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	21643554	241468860	1730513	92	84801											
TTLL3	26140	broad.mit.edu	37	chr3	9877074	9877074	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatccaacaccaaataaaaaGaaacaagtgaagtatttggg	8	6	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9877074	C	C	9877074	3	2	79	1	0	0	0	0	1	0	0	0	16854	933	33	4	2266	4	TTLL3	3	9877074	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08		9877074	188145356	93	84802											
SLC6A11	6538	broad.mit.edu	37	chr3	10858238	10858238	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggagaaggggagggggCgccaaccgcccggtgggggc	23	9	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10858238	T	T	10858238	1	4	79	0	1	0	0	0	0	0	0	0	14788	783	27	4		4	SLC6A11	3	10858238	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	981164	10858238	187164192	94	84803											
RARB	5915	broad.mit.edu	37	chr3	25215902	25215902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaacatgaccaccagcgGccacgcatgtccggtcccag	10	17	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25215902	A	A	25215902	3	1	79	1	0	0	0	0	1	0	0	0	13161	1218	42	4		4	RARB	3	25215902	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	14357664	25215902	172806528	95	84804											
XYLB	9942	broad.mit.edu	37	chr3	38409663	38409663	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaggcacctctcactgtttCtttcctttacagagaatttc	6	11	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38409663	T	T	38409663	1	4	79	0	1	0	0	0	0	0	0	0	17589	928	32	4		4	XYLB	3	38409663	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	13193761	38409663	159612767	96	84805											
DOCK3	1795	broad.mit.edu	37	chr3	51400017	51400017	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgtctctgttctgtcctcGtcccaggcaagcccttcttc	7	16	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51400017	A	A	51400017	2	1	79	1	0	0	0	0	0	0	0	1	4728	1132	40	4		4	DOCK3	3	51400017	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	12990354	51400017	146622413	97	84806											
CACNA2D3	55799	broad.mit.edu	37	chr3	54952927	54952928	+	Intron	INS	-	C	C													ctgttagtccccctttaaaaINSaacaaaagcaaagaacaata							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54952928	C	C	54952927	6	5	79	0	1	1	1	0	0	0	0	0	2576	29	1	0		0	CACNA2D3	3	54952927	Intron	INS	-	TCGA-17-Z050-01A-01W-0747-08	3552910	54952927	143069503	98	84807											
DPPA2	151871	broad.mit.edu	37	chr3	109027099	109027099	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgccttgcgtttcctcgaAcatcgctgtaatctggtctc	8	13	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109027099	G	G	109027099	2	3	79	1	0	0	0	0	0	0	0	1	4774	41	2	5		5	DPPA2	3	109027099	Silent	SNP	A	TCGA-17-Z050-01A-01W-0747-08	54074172	109027099	88995331	99	84808											
ZBTB20	26137	broad.mit.edu	37	chr3	114070151	114070151	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgctgtaaaaagagcgCtcgccgctgccattctgcat	11	14	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114070151	G	G	114070151	3	3	79	1	0	0	0	0	1	0	0	0	17655	796	28	4	1459	4	ZBTB20	3	114070151	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5043052	114070151	83952279	100	84809											
GPR156	165829	broad.mit.edu	37	chr3	119905545	119905545	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggaggcactggatgggaTcagtcagcacccacgtcatg	13	11	4	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119905545	C	C	119905545	3	2	79	1	0	0	0	0	1	0	0	0	6726	1435	50	5	1904	5	GPR156	3	119905545	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	5835394	119905545	78116885	101	84810											
PARP14	54625	broad.mit.edu	37	chr3	122414253	122414253	+	Intron	DEL	T	-	-													aaatttactgattttctttcTttttttttttggtttgtaga							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122414253	-	-	122414253	6	5	79	0	1	1	0	1	0	0	0	0	11552	1624	56	0		0	PARP14	3	122414253	Intron	DEL	T	TCGA-17-Z050-01A-01W-0747-08	2508708	122414253	75608177	102	84811											
COL6A6	131873	broad.mit.edu	37	chr3	130290029	130290029	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcaccgatggggaatcCcatgatgctgataaactcaa	10	9	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130290029	A	A	130290029	2	1	79	1	0	0	0	0	0	0	0	1	3735	610	22	2		2	COL6A6	3	130290029	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	7875776	130290029	67732401	103	84812											
CPNE4	131034	broad.mit.edu	37	chr3	131404858	131404858	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcatttgatctagtcctGatcaatcaggaatatttaat	6	8	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131404858	T	T	131404858	1	4	79	0	1	0	0	0	0	0	0	0	3846	1305	45	3		3	CPNE4	3	131404858	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1114829	131404858	66617572	104	84813											
CPNE4	131034	broad.mit.edu	37	chr3	131415374	131415374	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcaataaggttaatgcCaaacgctttaccttgtcatc	5	11	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131415374	G	G	131415374	1	3	79	0	1	0	0	0	0	0	0	0	3846	609	21	4		4	CPNE4	3	131415374	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	10516	131415374	66607056	105	84814											
CPNE4	131034	broad.mit.edu	37	chr3	131442524	131442524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattatttttattattaccGttcaagaaaattcatctcag	5	6	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131442524	T	T	131442524	1	4	79	0	1	0	0	0	0	0	0	0	3846	1160	40	3		3	CPNE4	3	131442524	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	27150	131442524	66579906	106	84815											
P2RY1	5028	broad.mit.edu	37	chr3	152553814	152553814	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttcgtcttccacatgaaGccctggagcggcatctccgt	10	13	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152553814	A	A	152553814	2	1	79	1	0	0	0	0	0	0	0	1	11440	962	34	4		4	P2RY1	3	152553814	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	21111290	152553814	45468616	107	84816											
LEKR1	389170	broad.mit.edu	37	chr3	156742693	156742693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaaagtataagaaagaaCaagaggaactacaaatgaag	8	5	0	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156742693	A	A	156742693	3	1	79	1	0	0	0	0	1	0	0	0	8789	479	17	3	1386	3	LEKR1	3	156742693	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	4188879	156742693	41279737	108	84817											
SMC4	10051	broad.mit.edu	37	chr3	160120513	160120513	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtggcaaatccaatgttaTtgattctatgctttttgtgt	8	6	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160120513	C	C	160120513	3	2	79	1	0	0	0	0	1	0	0	0	14899	1493	52	5	378	5	SMC4	3	160120513	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	3377820	160120513	37901917	109	84818											
KPNA4	3840	broad.mit.edu	37	chr3	160243897	160243897	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacactggggcccatcaccTgtagaaaaaaaggattaatt	8	9	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160243897	A	A	160243897	5	1	79	1	0	0	0	0	0	0	1	0	8503	1594	55	5	1046	5	KPNA4	3	160243897	Splice_Site	SNP	T	TCGA-17-Z050-01A-01W-0747-08	123384	160243897	37778533	110	84819											
SI	6476	broad.mit.edu	37	chr3	164758796	164758796	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaacagagtgtagaggaaGggtaataaggtgtagcgaat	14	2	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164758796	A	A	164758796	2	1	79	1	0	0	0	0	0	0	0	1	14410	987	35	4		4	SI	3	164758796	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4514899	164758796	33263634	111	84820											
HTR3C	170572	broad.mit.edu	37	chr3	183772675	183772675	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctgccatcctgggagtGgtgagacttagtccctgcat	12	11	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183772675	A	A	183772675	2	1	79	1	0	0	0	0	0	0	0	1	7516	1362	47	4		4	HTR3C	3	183772675	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	19013879	183772675	14249755	112	84821											
ATP13A5	344905	broad.mit.edu	37	chr3	193096428	193096428	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgggctctttgagaagacTaataaaataaagggaagact	10	5	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193096428	G	G	193096428	1	3	79	0	1	0	0	0	0	0	0	0	1131	1537	53	5		5	ATP13A5	3	193096428	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	9323753	193096428	4926002	113	84822											
HTT	3064	broad.mit.edu	37	chr4	3189587	3189587	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgaagggaaacaaataaaGaatttgccagaagaaacatt	9	4	0	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3189587	C	C	3189587	3	2	79	1	0	0	0	0	1	0	0	0	7527	933	33	4	5353	4	HTT	4	3189587	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08		3189587	187964689	114	84823											
FBXL5	26234	broad.mit.edu	37	chr4	15642516	15642516	+	Intron	DEL	A	-	-													tcatattcattctggaaaccAaaaaaaaaatacatttttat							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15642516	-	-	15642516	6	5	79	0	1	1	0	1	0	0	0	0	5779	145	5	0		0	FBXL5	4	15642516	Intron	DEL	A	TCGA-17-Z050-01A-01W-0747-08	12452929	15642516	175511760	115	84824											
SLIT2	9353	broad.mit.edu	37	chr4	20618936	20618936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggggaggggaggggagGttcgttaggcattagcactc	21	5	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20618936	T	T	20618936	1	4	79	0	1	0	0	0	0	0	0	0	14854	1276	44	3		3	SLIT2	4	20618936	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4976420	20618936	170535340	116	84825											
KCNIP4	80333	broad.mit.edu	37	chr4	20731902	20731902	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgcaaatgtaaatgccAttctattctatccattttcc	4	9	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20731902	T	T	20731902	1	4	79	0	1	0	0	0	0	0	0	0	8112	232	8	5		5	KCNIP4	4	20731902	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	112966	20731902	170422374	117	84826											
APBB2	323	broad.mit.edu	37	chr4	40936703	40936703	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggtccgggttaacagtgGctgcatgcaaatcctagagg	15	8	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40936703	A	A	40936703	3	1	79	1	0	0	0	0	1	0	0	0	763	1203	42	4	1198	4	APBB2	4	40936703	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	20204801	40936703	150217573	118	84827											
GRXCR1	389207	broad.mit.edu	37	chr4	42895787	42895787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacatgcttcatgagacGctcctccacctaagatactg	6	14	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42895787	T	T	42895787	1	4	79	0	1	0	0	0	0	0	0	0	6878	1102	38	3		3	GRXCR1	4	42895787	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1959084	42895787	148258489	119	84828											
TXK	7294	broad.mit.edu	37	chr4	48136268	48136268	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaaacacatctttcaactGaaatcatagttcgctcaaga	4	10	4	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48136268	T	T	48136268	1	4	79	0	1	0	0	0	0	0	0	0	16912	1305	45	3		3	TXK	4	48136268	5'UTR	SNP	G	TCGA-17-Z050-01A-01W-0747-08	5240481	48136268	143018008	120	84829											
SPATA18	132671	broad.mit.edu	37	chr4	52943204	52943204	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatcatctacatcgccacaGtggtatgtgacgcctgcggg	13	11	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52943204	C	C	52943204	3	2	79	1	0	0	0	0	1	0	0	0	15119	1029	36	4	1044	4	SPATA18	4	52943204	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4806936	52943204	138211072	121	84830											
PDGFRA	5156	broad.mit.edu	37	chr4	54364790	54364790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccccttgctgcagcccCacagccacagtctctacctt	6	19	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54364790	A	A	54364790	1	1	79	0	1	0	0	0	0	0	0	0	11755	609	21	2		2	PDGFRA	4	54364790	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1421586	54364790	136789486	122	84831											
KIAA1211	57482	broad.mit.edu	37	chr4	57182422	57182422	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagccccttccacccggagGgactccgctgaaccttccag	9	18	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57182422	A	A	57182422	2	1	79	1	0	0	0	0	0	0	0	1	8285	1223	43	4		4	KIAA1211	4	57182422	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2817632	57182422	133971854	123	84832											
POLR2B	5431	broad.mit.edu	37	chr4	57890152	57890152	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtatctttgagtcccttTtaaaatttttctttgtagga	6	5	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57890152	C	C	57890152	1	2	79	0	1	0	0	0	0	0	0	0	12310	1856	64	5		5	POLR2B	4	57890152	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	707730	57890152	133264124	124	84833											
CENPC1	1060	broad.mit.edu	37	chr4	68374526	68374526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattgtacacataacagaCattacctagaacaatcaaga	4	8	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68374526	A	A	68374526	1	1	79	0	1	0	0	0	0	0	0	0	3259	493	17	3		3	CENPC1	4	68374526	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	10484374	68374526	122779750	125	84834											
YTHDC1	91746	broad.mit.edu	37	chr4	69203448	69203448	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgtttctttcagatctttGatattcctcatttttatact	3	8	4	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69203448	A	A	69203448	4	1	79	1	0	0	0	0	0	1	0	0	17623	1299	45	4	1942	4	YTHDC1	4	69203448	Nonsense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	828922	69203448	121950828	126	84835											
UGT2B7	7364	broad.mit.edu	37	chr4	69962880	69962880	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggagagggtaaaaaatatGatctatgtgctttactttga	10	3	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69962880	T	T	69962880	3	4	79	1	0	0	0	0	1	0	0	0	17088	1290	45	3	644	3	UGT2B7	4	69962880	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	759432	69962880	121191396	127	84836											
UGT2B28	54490	broad.mit.edu	37	chr4	70152596	70152596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccttgccaagatcccaCaaaaggtaagataaagtgcc	8	12	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70152596	A	A	70152596	3	1	79	1	0	0	0	0	1	0	0	0	17086	479	17	3	1007	3	UGT2B28	4	70152596	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	189716	70152596	121001680	128	84837											
FRAS1	80144	broad.mit.edu	37	chr4	79385778	79385778	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttctctggctaaatgagAggctgacctggtggcagcta	15	8	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79385778	G	G	79385778	1	3	79	0	1	0	0	0	0	0	0	0	6102	319	11	5		5	FRAS1	4	79385778	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	9233182	79385778	111768498	129	84838											
MAPK10	5602	broad.mit.edu	37	chr4	87115370	87115370	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgccagctcctaattctAaactactgttaatatgatat	4	9	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87115370	G	G	87115370	1	3	79	0	1	0	0	0	0	0	0	0	9364	377	13	5		5	MAPK10	4	87115370	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	7729592	87115370	104038906	130	84839											
DMP1	1758	broad.mit.edu	37	chr4	88580707	88580707	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttagattaaattacctggCgacagttctaaatataatat	6	5	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88580707	T	T	88580707	1	4	79	0	1	0	0	0	0	0	0	0	4623	783	27	4		4	DMP1	4	88580707	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1465337	88580707	102573569	131	84840											
ABCG2	9429	broad.mit.edu	37	chr4	89034566	89034566	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgatctccttgaagactgtGatcttcttcttcttctcacc	5	13	6	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89034566	T	T	89034566	2	4	79	1	0	0	0	0	0	0	0	1	69	1280	45	3		3	ABCG2	4	89034566	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	453859	89034566	102119710	132	84841											
ADH1B	125	broad.mit.edu	37	chr4	100235171	100235171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgctccagctgctttaCagcccataacagcagatagg	10	12	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100235171	A	A	100235171	3	1	79	1	0	0	0	0	1	0	0	0	308	478	17	3	508	3	ADH1B	4	100235171	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	11200605	100235171	90919105	133	84842											
PPP3CA	5530	broad.mit.edu	37	chr4	101984526	101984526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactgcagctaaaaataacCaaaagaggatgttaggaaca	8	6	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101984526	A	A	101984526	1	1	79	0	1	0	0	0	0	0	0	0	12498	609	21	2		2	PPP3CA	4	101984526	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1749355	101984526	89169750	134	84843											
C4orf21	55345	broad.mit.edu	37	chr4	113533734	113533734	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaactactgtaataaaTggtttcctcactgtaatgga	9	6	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113533734	G	G	113533734	2	3	79	1	0	0	0	0	0	0	0	1	2277	1451	51	5		5	C4orf21	4	113533734	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	11549208	113533734	77620542	135	84844											
ANK2	287	broad.mit.edu	37	chr4	114095522	114095522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctttctgtattggataCatttctatttcatcaatagt	5	6	5	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114095522	A	A	114095522	1	1	79	0	1	0	0	0	0	0	0	0	621	493	17	3		3	ANK2	4	114095522	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	561788	114095522	77058754	136	84845											
KIAA1109	84162	broad.mit.edu	37	chr4	123122203	123122203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccccgaatatggaacatgCcgcagacatggcagtgtgaa	11	11	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123122203	T	T	123122203	3	4	79	1	0	0	0	0	1	0	0	0	8278	739	26	4	1470	4	KIAA1109	4	123122203	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	9026681	123122203	68032073	137	84846											
PCDH18	54510	broad.mit.edu	37	chr4	138450846	138450846	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaaactgttgagtgactgGtgactgttgtgactctgccg	12	9	1	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138450846	C	C	138450846	3	2	79	1	0	0	0	0	1	0	0	0	11607	1252	44	4	1026	4	PCDH18	4	138450846	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	15328643	138450846	52703430	138	84847											
RBM46	166863	broad.mit.edu	37	chr4	155748915	155748915	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaagatttccagtgttAgaacattatgttaaaatgtg	7	5	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155748915	T	T	155748915	1	4	79	0	1	0	0	0	0	0	0	0	13248	435	15	5		5	RBM46	4	155748915	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	17298069	155748915	35405361	139	84848											
DNAH5	1767	broad.mit.edu	37	chr5	13868090	13868090	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccatatctgttaagcagGgcataagattcctaaaaaaa	7	7	1	1	rs140336904		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13868090	A	A	13868090	2	1	79	1	0	0	0	0	0	0	0	1	4644	1219	43	4		4	DNAH5	5	13868090	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08		13868090	167047170	140	84849											
MYO10	4651	broad.mit.edu	37	chr5	16877805	16877805	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccattttctctcagccaGacccgtgttccctgtaaaca	7	14	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16877805	A	A	16877805	2	1	79	1	0	0	0	0	0	0	0	1	10156	929	33	4		4	MYO10	5	16877805	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3009715	16877805	164037455	141	84850											
PRDM9	56979	broad.mit.edu	37	chr5	23526760	23526760	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggtaggaatctcaagaatTgcaaaagtcaagtatggaga	13	4	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23526760	A	A	23526760	2	1	79	1	0	0	0	0	0	0	0	1	12569	1800	63	5		5	PRDM9	5	23526760	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	6648955	23526760	157388500	142	84851											
CDH9	1007	broad.mit.edu	37	chr5	26881306	26881306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttttgaaacgaggccccCagtcactgaggtaatcataa	9	9	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881306	A	A	26881306	3	1	79	1	0	0	0	0	1	0	0	0	3147	595	21	2	64	2	CDH9	5	26881306	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3354546	26881306	154033954	143	84852											
TRIM23	373	broad.mit.edu	37	chr5	64920031	64920031	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtccctcaccttcactacaGctgtcccccggctgccctgc	8	20	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64920031	C	C	64920031	3	2	79	1	0	0	0	0	1	0	0	0	16621	971	34	4	1764	4	TRIM23	5	64920031	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	38038725	64920031	115995229	144	84853											
ERBB2IP	55914	broad.mit.edu	37	chr5	65374203	65374203	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actacttggcagaaatgcaaAtaaataactataaaatgttt	5	5	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65374203	T	T	65374203	1	4	79	0	1	0	0	0	0	0	0	0	5249	116	4	5		5	ERBB2IP	5	65374203	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	454172	65374203	115541057	145	84854											
CD180	4064	broad.mit.edu	37	chr5	66492427	66492427	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgactttacagccggcagAaaacagcaccacccaaaaga	8	12	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66492427	G	G	66492427	3	3	79	1	0	0	0	0	1	0	0	0	3002	246	9	5	1954	5	CD180	5	66492427	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	1118224	66492427	114422833	146	84855											
ZFYVE16	9765	broad.mit.edu	37	chr5	79753039	79753039	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaacaatatgttttgaaAtttcagctacacaacagatt	4	6	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79753039	C	C	79753039	1	2	79	0	1	0	0	0	0	0	0	0	17790	116	4	5		5	ZFYVE16	5	79753039	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	13260612	79753039	101162221	147	84856											
FAM172A	83989	broad.mit.edu	37	chr5	93159770	93159770	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttataacataacttaaAgagtattgataccaacagaa	4	6	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93159770	G	G	93159770	1	3	79	0	1	0	0	0	0	0	0	0	5537	87	3	5		5	FAM172A	5	93159770	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	13406731	93159770	87755490	148	84857											
TSSK1B	83942	broad.mit.edu	37	chr5	112769609	112769609	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccctcaggctccagcttggTggcagacttcttgtcagagc	11	13	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112769609	A	A	112769609	3	1	79	1	0	0	0	0	1	0	0	0	16793	1696	59	5	179	5	TSSK1B	5	112769609	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	19609839	112769609	68145651	149	84858											
DMXL1	1657	broad.mit.edu	37	chr5	118574786	118574786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgacaataggtaagagatgAtagctaaaattgaagtatga	10	3	0	5			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118574786	G	G	118574786	1	3	79	0	1	0	0	0	0	0	0	0	4634	348	12	5		5	DMXL1	5	118574786	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	5805177	118574786	62340474	150	84859											
HSD17B4	3295	broad.mit.edu	37	chr5	118813117	118813117	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatttattgttttagatataAtccacagagttcatttgcgg	7	5	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118813117	T	T	118813117	3	4	79	1	0	0	0	0	1	0	0	0	7453	101	4	5	381	5	HSD17B4	5	118813117	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	238331	118813117	62102143	151	84860											
ACSL6	23305	broad.mit.edu	37	chr5	131329695	131329695	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctgccccctactttcCgcagtggaacgtctcctatc	7	17	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131329695	T	T	131329695	1	4	79	0	1	0	0	0	0	0	0	0	181	667	23	4		4	ACSL6	5	131329695	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	12516578	131329695	49585565	152	84861											
KDM3B	51780	broad.mit.edu	37	chr5	137759816	137759816	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttgaccacatcattgcctCagtggtagaaaataagaaaa	7	8	3	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137759816	A	A	137759816	4	1	79	1	0	0	0	0	0	1	0	0	8197	838	29	3	4087	3	KDM3B	5	137759816	Nonsense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6430121	137759816	43155444	153	84862											
MATR3	9782	broad.mit.edu	37	chr5	138643661	138643661	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaaaaggcactttagaaGagatagttttgatgatcgtg	11	3	0	5			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138643661	A	A	138643661	3	1	79	1	0	0	0	0	1	0	0	0	9429	942	33	4	559	4	MATR3	5	138643661	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	883845	138643661	42271599	154	84863											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720282	140720282	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagctggcgccccgctccGcagagcccggctacctggtg	15	16	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140720282	A	A	140720282	3	1	79	1	0	0	0	0	1	0	0	0	11648	1087	38	4	1746	4	PCDHGA2	5	140720282	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2076621	140720282	40194978	155	84864											
ARAP3	64411	broad.mit.edu	37	chr5	141039358	141039358	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccttacatcaaagacagaGatgtagccatcaatgagctc	8	10	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141039358	A	A	141039358	2	1	79	1	0	0	0	0	0	0	0	1	842	932	33	4		4	ARAP3	5	141039358	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	319076	141039358	39875902	156	84865											
PDE6A	5145	broad.mit.edu	37	chr5	149277824	149277825	+	Intron	DNP	CC	AA	AA													aacagtgcacaaacccatgcCcaggctgtgccctcatggag							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	149277825	AA	AA	149277824	1	1	79	0	1	0	0	0	0	0	0	0	11739	638	22	2		2	PDE6A	5	149277824	Intron	DNP	CC	TCGA-17-Z050-01A-01W-0747-08	8238466	149277824	31637436	157	84866											
HAVCR1	26762	broad.mit.edu	37	chr5	156479778	156479778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccctaggtggagttaaCttcctgaactgtcaatcttg	9	10	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156479778	A	A	156479778	1	1	79	0	1	0	0	0	0	0	0	0	7039	580	20	3		3	HAVCR1	5	156479778	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	7201954	156479778	24435482	158	84867											
ODZ2	57451	broad.mit.edu	37	chr5	167642095	167642095	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtggaccccgtgtccggctCgctctacgtgtccgacacca	11	16	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167642095	T	T	167642095	3	4	79	1	0	0	0	0	1	0	0	0	10930	893	31	4	3951	4	ODZ2	5	167642095	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	11162317	167642095	13273165	159	84868											
SLIT3	6586	broad.mit.edu	37	chr5	168233477	168233477	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatgccctccggcaagttGgcaggaatctccatcaagcc	10	14	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168233477	T	T	168233477	2	4	79	1	0	0	0	0	0	0	0	1	14855	1335	47	2		2	SLIT3	5	168233477	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	591382	168233477	12681783	160	84869											
SLC34A1	6569	broad.mit.edu	37	chr5	176815190	176815190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacgaagctcatcatccaGgtgacagcagggcctggcat	11	12	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176815190	T	T	176815190	3	4	79	1	0	0	0	0	1	0	0	0	14681	1014	35	2	862	2	SLC34A1	5	176815190	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	8581713	176815190	4100070	161	84870											
OR2V2	285659	broad.mit.edu	37	chr5	180582009	180582009	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggcatcttctcccacagtActgctgaccttgtcctcttc	6	15	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180582009	G	G	180582009	3	3	79	1	0	0	0	0	1	0	0	0	11125	391	14	5	69	5	OR2V2	5	180582009	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	3766819	180582009	333251	162	84871											
FOXF2	2295	broad.mit.edu	37	chr6	1390695	1390695	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgggcggcccggcaagggCcactactggaccatcgaccc	13	17	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1390695	T	T	1390695	2	4	79	1	0	0	0	0	0	0	0	1	6066	726	26	4		4	FOXF2	6	1390695	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08		1390695	169724372	163	84872											
F13A1	2162	broad.mit.edu	37	chr6	6197385	6197385	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggcgtggttcccacacatCaaatgcaagcataaaagcaa	9	10	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6197385	T	T	6197385	1	4	79	0	1	0	0	0	0	0	0	0	5383	841	29	4		4	F13A1	6	6197385	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	4806690	6197385	164917682	164	84873											
RREB1	6239	broad.mit.edu	37	chr6	7229614	7229614	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggttctctcacagttctcCccgcgaccaaggacagcata	9	15	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7229614	G	G	7229614	3	3	79	1	0	0	0	0	1	0	0	0	13790	623	22	4	1308	4	RREB1	6	7229614	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1032229	7229614	163885453	165	84874											
TFAP2A	7020	broad.mit.edu	37	chr6	10419585	10419585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttcctctcctcctccccGctccggccccctcccctact	4	26	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10419585	A	A	10419585	1	1	79	0	1	0	0	0	0	0	0	0	15910	1102	38	4		4	TFAP2A	6	10419585	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3189971	10419585	160695482	166	84875											
PHACTR1	221692	broad.mit.edu	37	chr6	13228216	13228216	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctcatgagtcagactaCgaagactcttcttgcctgta	9	11	4	3	rs139729794	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13228216	T	T	13228216	2	4	79	1	0	0	0	0	0	0	0	1	11904	547	19	4		4	PHACTR1	6	13228216	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2808631	13228216	157886851	167	84876											
BTN2A2	10385	broad.mit.edu	37	chr6	26388563	26388563	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacctatcaagtgtatgcagGatcctcagcacccagatgga	10	11	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26388563	T	T	26388563	1	4	79	0	1	0	0	0	0	0	0	0	1571	1189	41	3		3	BTN2A2	6	26388563	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	13160347	26388563	144726504	168	84877											
NKAPL	222698	broad.mit.edu	37	chr6	28227729	28227729	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagaaagaataagtcgTctaaaagaaagcataggaaa	8	3	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28227729	A	A	28227729	3	1	79	1	0	0	0	0	1	0	0	0	10535	1667	58	5	582	5	NKAPL	6	28227729	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	1839166	28227729	142887338	169	84878											
TNXB	7148	broad.mit.edu	37	chr6	32050187	32050187	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacataggaatgctgtgtgAggctgtgcaggttgttcact	13	8	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32050187	C	C	32050187	1	2	79	0	1	0	0	0	0	0	0	0	16469	319	11	5		5	TNXB	6	32050187	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	3822458	32050187	139064880	170	84879											
DNAH8	1769	broad.mit.edu	37	chr6	38790595	38790595	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagaagttatttatagtgTaaaaacatctgttttcagga	7	3	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38790595	C	C	38790595	1	2	79	0	1	0	0	0	0	0	0	0	4647	1653	57	5		5	DNAH8	6	38790595	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	6740408	38790595	132324472	171	84880											
CUL7	9820	broad.mit.edu	37	chr6	43007752	43007752	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcccaaagtgctgggattAcaggcgtgagcactgtgccc	12	13	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43007752	G	G	43007752	1	3	79	0	1	0	0	0	0	0	0	0	4093	406	14	5		5	CUL7	6	43007752	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	4217157	43007752	128107315	172	84881											
TBX18	9096	broad.mit.edu	37	chr6	85466432	85466432	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacatggccttggtcatccAgttcattgttggtgagcttc	10	10	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85466432	G	G	85466432	3	3	79	1	0	0	0	0	1	0	0	0	15775	188	7	5	1088	5	TBX18	6	85466432	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	42458680	85466432	85648635	173	84882											
KIAA0776	23376	broad.mit.edu	37	chr6	97000501	97000501	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacctggaagatgtgtccCacagatcattgcttttctta	8	10	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97000501	T	T	97000501	3	4	79	1	0	0	0	0	1	0	0	0	8263	594	21	4	2199	4	KIAA0776	6	97000501	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	11534069	97000501	74114566	174	84883											
MOXD1	26002	broad.mit.edu	37	chr6	132645331	132645331	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattttttaaagttttcatAttctgttgaaataggtttat	6	2	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132645331	G	G	132645331	1	3	79	0	1	0	0	0	0	0	0	0	9814	464	16	5		5	MOXD1	6	132645331	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	35644830	132645331	38469736	175	84884											
IPCEF1	26034	broad.mit.edu	37	chr6	154568540	154568540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagaaaagccacactcaaCgtacacaaaatggagataaa	8	9	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154568540	A	A	154568540	1	1	79	0	1	0	0	0	0	0	0	0	7861	551	19	3		3	IPCEF1	6	154568540	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	21923209	154568540	16546527	176	84885											
TULP4	56995	broad.mit.edu	37	chr6	158870115	158870115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttgcacgagtcagacGgtgtcctcggcatgtcctgg	12	13	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158870115	T	T	158870115	3	4	79	1	0	0	0	0	1	0	0	0	16902	1116	39	1	645	1	TULP4	6	158870115	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4301575	158870115	12244952	177	84886											
EZR	7430	broad.mit.edu	37	chr6	159210525	159210526	+	Intron	INS	-	G	G													tatgcctgacatcagttcctINSgtgctagtcaggaagccaca							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159210526	G	G	159210525	6	5	79	0	1	1	1	0	0	0	0	0	5378	1595	55	0		0	EZR	6	159210525	Intron	INS	-	TCGA-17-Z050-01A-01W-0747-08	340410	159210525	11904542	178	84887											
FNDC1	84624	broad.mit.edu	37	chr6	159646794	159646794	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgaattttcaatttgggaAttacacccaaaataagattt	5	5	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159646794	T	T	159646794	1	4	79	0	1	0	0	0	0	0	0	0	6026	116	4	5		5	FNDC1	6	159646794	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	436269	159646794	11468273	179	84888											
LPA	4018	broad.mit.edu	37	chr6	160952974	160952974	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaagctgccaaccttttAatatgggatgccatccttct	6	11	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160952974	T	T	160952974	1	4	79	0	1	0	0	0	0	0	0	0	8990	377	13	5		5	LPA	6	160952974	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	1306180	160952974	10162093	180	84889											
PLG	5340	broad.mit.edu	37	chr6	161123295	161123295	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaagtcaacaacatcctgGgattgggacccactttctgg	10	10	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161123295	T	T	161123295	1	4	79	0	1	0	0	0	0	0	0	0	12181	1247	43	2		2	PLG	6	161123295	5'UTR	SNP	G	TCGA-17-Z050-01A-01W-0747-08	170321	161123295	9991772	181	84890											
RPS6KA2	6196	broad.mit.edu	37	chr6	166923854	166923854	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcggtcccgaactgcaaagTaaaaagataaaggctttcat	8	9	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166923854	A	A	166923854	1	1	79	0	1	0	0	0	0	0	0	0	13762	1653	57	5		5	RPS6KA2	6	166923854	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	5800559	166923854	4191213	182	84891											
FOXK1	221937	broad.mit.edu	37	chr7	4780505	4780505	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccagcacggccatcaagatCcagttcacgtcgctctatca	7	16	4	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4780505	G	G	4780505	3	3	79	1	0	0	0	0	1	0	0	0	6074	845	30	4	603	4	FOXK1	7	4780505	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08		4780505	154358158	183	84892											
EIF2AK1	27102	broad.mit.edu	37	chr7	6078246	6078246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctctcgactatccaatcCcacagcgagagctcacacag	6	15	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6078246	A	A	6078246	3	1	79	1	0	0	0	0	1	0	0	0	5036	624	22	2	740	2	EIF2AK1	7	6078246	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1297741	6078246	153060417	184	84893											
COL28A1	340267	broad.mit.edu	37	chr7	7472368	7472368	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcagtgatatcatgagactCaactagaaaacacctggtca	7	9	4	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7472368	G	G	7472368	1	3	79	0	1	0	0	0	0	0	0	0	3718	841	29	4		4	COL28A1	7	7472368	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1394122	7472368	151666295	185	84894											
TMEM195	392636	broad.mit.edu	37	chr7	15240864	15240864	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatatgcagtcataatatgCgtgtggacaactcattaaaa	7	6	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15240864	A	A	15240864	1	1	79	0	1	0	0	0	0	0	0	0	16240	783	27	3		3	TMEM195	7	15240864	3'UTR	SNP	C	TCGA-17-Z050-01A-01W-0747-08	7768496	15240864	143897799	186	84895											
SKAP2	8935	broad.mit.edu	37	chr7	26730005	26730005	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataaacattatcaatggCacattgaagggttttctcag	7	6	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26730005	A	A	26730005	1	1	79	0	1	0	0	0	0	0	0	0	14469	725	25	3		3	SKAP2	7	26730005	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	11489141	26730005	132408658	187	84896											
JAZF1	221895	broad.mit.edu	37	chr7	28031633	28031633	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaattacgattttttttaGattttgcatcagaatatatg	5	5	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28031633	C	C	28031633	1	2	79	0	1	0	0	0	0	0	0	0	8016	957	33	4		4	JAZF1	7	28031633	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1301628	28031633	131107030	188	84897											
CREB5	9586	broad.mit.edu	37	chr7	28843965	28843965	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcatcagcaccagacactGccaccccatcacccttaccc	4	22	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28843965	A	A	28843965	2	1	79	1	0	0	0	0	0	0	0	1	3892	1306	46	4		4	CREB5	7	28843965	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	812332	28843965	130294698	189	84898											
CPVL	54504	broad.mit.edu	37	chr7	29112024	29112024	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgcaatggctggcacatAtttccctgcataagactgag	11	9	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29112024	G	G	29112024	3	3	79	1	0	0	0	0	1	0	0	0	3867	449	16	5	829	5	CPVL	7	29112024	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	268059	29112024	130026639	190	84899											
FKBP9	11328	broad.mit.edu	37	chr7	33035693	33035693	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcacttggagggccttgaGgacatacctggtgacactgg	13	11	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33035693	C	C	33035693	1	2	79	0	1	0	0	0	0	0	0	0	5972	1015	35	4		4	FKBP9	7	33035693	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3923669	33035693	126102970	191	84900											
ABCA13	154664	broad.mit.edu	37	chr7	48318356	48318356	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccacatcaatggactccaTtgtgaaacttcttaagctgg	8	10	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48318356	C	C	48318356	3	2	79	1	0	0	0	0	1	0	0	0	31	1493	52	5	7464	5	ABCA13	7	48318356	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	15282663	48318356	110820307	192	84901											
ZNF679	168417	broad.mit.edu	37	chr7	63720645	63720645	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catagaattctctctggaggAgtggcaatgcctggatcacg	12	9	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63720645	G	G	63720645	3	3	79	1	0	0	0	0	1	0	0	0	18213	304	11	5	92	5	ZNF679	7	63720645	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	15402289	63720645	95418018	193	84902											
HIP1	3092	broad.mit.edu	37	chr7	75221233	75221233	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtactctttgggggcatccTtagtccgtctctggcaccca	11	13	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75221233	A	A	75221233	1	1	79	0	1	0	0	0	0	0	0	0	7181	1624	56	5		5	HIP1	7	75221233	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	11500588	75221233	83917430	194	84903											
CCDC146	57639	broad.mit.edu	37	chr7	76916080	76916080	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagattaactgagctagagCgttcattttaaagttaatgt	8	5	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76916080	T	T	76916080	1	4	79	0	1	0	0	0	0	0	0	0	2806	783	27	4		4	CCDC146	7	76916080	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1694847	76916080	82222583	195	84904											
MAGI2	9863	broad.mit.edu	37	chr7	77764363	77764363	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggaatgatgcgaagggtGacactaagacctgcatcctt	12	8	0	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764363	A	A	77764363	2	1	79	1	0	0	0	0	0	0	0	1	9283	1277	45	4		4	MAGI2	7	77764363	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	848283	77764363	81374300	196	84905											
MAGI2	9863	broad.mit.edu	37	chr7	77789677	77789677	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaggcactgttctagacaGtggtattgttacaagactgg	11	7	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77789677	A	A	77789677	1	1	79	0	1	0	0	0	0	0	0	0	9283	1044	36	4		4	MAGI2	7	77789677	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	25314	77789677	81348986	197	84906											
SEMA3C	10512	broad.mit.edu	37	chr7	80435147	80435147	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctaggtgagtttatttatTaggagatcaccacaggtatt	9	5	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80435147	A	A	80435147	1	1	79	0	1	0	0	0	0	0	0	0	14139	1769	61	5		5	SEMA3C	7	80435147	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	2645470	80435147	78703516	198	84907											
HGF	3082	broad.mit.edu	37	chr7	81334845	81334845	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtaataggccatcatagTtgatcactagattgatgcaa	8	8	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81334845	G	G	81334845	3	3	79	1	0	0	0	0	1	0	0	0	7152	1725	60	5	323	5	HGF	7	81334845	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	899698	81334845	77803818	199	84908											
SEMA3D	223117	broad.mit.edu	37	chr7	84671682	84671682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggtggctattacaggtaGtgtcttattgatgtcattgt	11	5	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84671682	T	T	84671682	1	4	79	0	1	0	0	0	0	0	0	0	14140	1044	36	3		3	SEMA3D	7	84671682	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3336837	84671682	74466981	200	84909											
DYNC1I1	1780	broad.mit.edu	37	chr7	95665182	95665182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggaaaaatggaaagcaCgacttcaactcttcattatc	6	10	4	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95665182	A	A	95665182	1	1	79	0	1	0	0	0	0	0	0	0	4882	551	19	3		3	DYNC1I1	7	95665182	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	10993500	95665182	63473481	201	84910											
TAC1	6863	broad.mit.edu	37	chr7	97362158	97362158	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgcaccgccaccacggaaaGaggcagcggttgcgtgcgag	15	13	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97362158	C	C	97362158	1	2	79	0	1	0	0	0	0	0	0	0	15617	957	33	4		4	TAC1	7	97362158	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1696976	97362158	61776505	202	84911											
NRF1	4899	broad.mit.edu	37	chr7	129367153	129367154	+	Frame_Shift_Ins	INS	-	G	G													ggggacagatcgtcttgtctINSggggaaaccgcagcagccgt							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129367154	G	G	129367153	7	5	79	1	0	1	1	0	0	0	0	0	10741	1567	55	0	1330	0	NRF1	7	129367153	Frame_Shift_Ins	INS	-	TCGA-17-Z050-01A-01W-0747-08	32004995	129367153	29771510	203	84912											
AGAP3	116988	broad.mit.edu	37	chr7	150839715	150839715	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaagccagggcctgatgCctgcaggtgagcagatggtg	15	11	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150839715	T	T	150839715	3	4	79	1	0	0	0	0	1	0	0	0	369	739	26	4	2396	4	AGAP3	7	150839715	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	21472562	150839715	8298948	204	84913											
CSMD1	64478	broad.mit.edu	37	chr8	3351088	3351088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcagaatctcatctccaCccaccgtgccccgcactgca	7	18	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3351088	A	A	3351088	1	1	79	0	1	0	0	0	0	0	0	0	3978	522	18	3		3	CSMD1	8	3351088	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08		3351088	143012934	205	84914											
PURG	29942	broad.mit.edu	37	chr8	30889679	30889679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaaataacctatcatgCcagtcccccgcatcatggtt	7	14	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30889679	A	A	30889679	3	1	79	1	0	0	0	0	1	0	0	0	12937	739	26	3	536	3	PURG	8	30889679	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	27538591	30889679	115474343	206	84915											
WRN	7486	broad.mit.edu	37	chr8	30973742	30973742	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaatatatcattatttttGataggctttcttcctttagt	4	5	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30973742	C	C	30973742	1	2	79	0	1	0	0	0	0	0	0	0	17529	1305	45	4		4	WRN	8	30973742	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	84063	30973742	115390280	207	84916											
VDAC3	7419	broad.mit.edu	37	chr8	42252586	42252586	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacattactgtgtttttgtGtgtgtgtgtgtataggcttt	12	3	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42252586	A	A	42252586	1	1	79	0	1	0	0	0	0	0	0	0	17275	1392	48	4		4	VDAC3	8	42252586	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	11278844	42252586	104111436	208	84917											
ADHFE1	137872	broad.mit.edu	37	chr8	67372711	67372711	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccccaggtaagagaccGgcaggctcctcactccctgc	11	17	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67372711	A	A	67372711	1	1	79	0	1	0	0	0	0	0	0	0	314	1131	39	4		4	ADHFE1	8	67372711	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	25120125	67372711	78991311	209	84918											
VCPIP1	80124	broad.mit.edu	37	chr8	67579088	67579089	+	Frame_Shift_Ins	INS	-	C	C													cggtctctccgcttcaaaagINScccccccgaagcagccgccg							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67579089	C	C	67579088	7	5	79	1	0	1	1	0	0	0	0	0	17268	971	34	0	3574	0	VCPIP1	8	67579088	Frame_Shift_Ins	INS	-	TCGA-17-Z050-01A-01W-0747-08	206377	67579088	78784934	210	84919											
RALYL	138046	broad.mit.edu	37	chr8	85800068	85800068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaacactagcatgttagCaactcattcattctaaaata	3	9	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85800068	A	A	85800068	1	1	79	0	1	0	0	0	0	0	0	0	13128	725	25	3		3	RALYL	8	85800068	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	18220980	85800068	60563954	211	84920											
DECR1	1666	broad.mit.edu	37	chr8	91056950	91056963	+	Intron	DEL	TTTTACTTACAAAG	-	-													aataatttggtgaaattcttTtttacttacaaagcctaagg							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	91056963	-	-	91056950	6	5	79	0	1	1	0	1	0	0	0	0	4415	1856	64	0		0	DECR1	8	91056950	Intron	DEL	TTTTACTTACAAAG	TCGA-17-Z050-01A-01W-0747-08	5256882	91056950	55307072	212	84921											
CALB1	793	broad.mit.edu	37	chr8	91081231	91081231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttatttgcttaccttaaGctcctcagtttctatgaagc	5	9	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91081231	T	T	91081231	3	4	79	1	0	0	0	0	1	0	0	0	2599	971	34	3	446	3	CALB1	8	91081231	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	24281	91081231	55282791	213	84922											
SLC26A7	115111	broad.mit.edu	37	chr8	92307874	92307874	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgggcttatccgacttTgaaatgcaaaggatccacgt	11	9	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92307874	C	C	92307874	2	2	79	1	0	0	0	0	0	0	0	1	14636	1809	63	5		5	SLC26A7	8	92307874	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	1226643	92307874	54056148	214	84923											
PKHD1L1	93035	broad.mit.edu	37	chr8	110455274	110455274	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccaaggagtcattaatgTtttaccagctgaaaccagac	7	10	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110455274	G	G	110455274	3	3	79	1	0	0	0	0	1	0	0	0	12067	1725	60	5	4635	5	PKHD1L1	8	110455274	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	18147400	110455274	35908748	215	84924											
SYBU	55638	broad.mit.edu	37	chr8	110598224	110598224	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatccgggtggttctacagaTgcacaggtgcaggtgagtca	14	8	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110598224	A	A	110598224	1	1	79	0	1	0	0	0	0	0	0	0	15545	1479	51	5		5	SYBU	8	110598224	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	142950	110598224	35765798	216	84925											
CSMD3	114788	broad.mit.edu	37	chr8	113697610	113697610	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatagaaatatattatatggGaaaaaaacagaaacagaaac	6	3	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113697610	A	A	113697610	1	1	79	0	1	0	0	0	0	0	0	0	3980	1189	41	4		4	CSMD3	8	113697610	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3099386	113697610	32666412	217	84926											
CSMD3	114788	broad.mit.edu	37	chr8	113988400	113988400	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggacacagtagcactagAtgctaactttttctttttaa	8	7	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113988400	C	C	113988400	1	2	79	0	1	0	0	0	0	0	0	0	3980	348	12	5		5	CSMD3	8	113988400	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	290790	113988400	32375622	218	84927											
TRPS1	7227	broad.mit.edu	37	chr8	116616126	116616126	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgggaaatctcttcttcCacttgggtaataaaatcaca	7	9	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116616126	G	G	116616126	2	3	79	1	0	0	0	0	0	0	0	1	16718	581	21	4		4	TRPS1	8	116616126	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2627726	116616126	29747896	219	84928											
ENPP2	5168	broad.mit.edu	37	chr8	120606014	120606014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtctccgacaaagatgacGttgacacaccgatgcagttt	10	10	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120606014	T	T	120606014	3	4	79	1	0	0	0	0	1	0	0	0	5172	1136	40	3	1667	3	ENPP2	8	120606014	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3989888	120606014	25758008	220	84929											
ENPP2	5168	broad.mit.edu	37	chr8	120606215	120606215	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacttccggcccagaggcaGagctttgtctggggagattt	13	9	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120606215	C	C	120606215	1	2	79	0	1	0	0	0	0	0	0	0	5172	957	33	4		4	ENPP2	8	120606215	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	201	120606215	25757807	221	84930											
ATAD2	29028	broad.mit.edu	37	chr8	124368610	124368610	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataggaagaaacgttgaagtGccatcaagcaagttttacct	9	7	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124368610	A	A	124368610	1	1	79	0	1	0	0	0	0	0	0	0	1075	1334	46	4		4	ATAD2	8	124368610	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3762395	124368610	21995412	222	84931											
C8orf33	65265	broad.mit.edu	37	chr8	146278340	146278340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtgcgaatccacgggcaCgtgtgatctggggtccgcgg	18	11	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146278340	A	A	146278340	1	1	79	0	1	0	0	0	0	0	0	0	2447	551	19	3		3	C8orf33	8	146278340	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	21909730	146278340	85682	223	84932											
IL33	90865	broad.mit.edu	37	chr9	6253538	6253538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaccagagggattttatGcattctctttcagataaggt	8	8	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6253538	T	T	6253538	1	4	79	0	1	0	0	0	0	0	0	0	7763	1334	46	3		3	IL33	9	6253538	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08		6253538	134959893	224	84933											
PTPRD	5789	broad.mit.edu	37	chr9	8748148	8748148	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagcagttagagcggttgtCagccaacctccccaacagca	10	13	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8748148	T	T	8748148	1	4	79	0	1	0	0	0	0	0	0	0	12907	841	29	4		4	PTPRD	9	8748148	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2494610	8748148	132465283	225	84934											
PLAA	9373	broad.mit.edu	37	chr9	26910306	26910306	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctcaaacagtctgtgaaTatgtgaataaattaattaaa	5	5	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26910306	C	C	26910306	1	2	79	0	1	0	0	0	0	0	0	0	12106	1421	49	5		5	PLAA	9	26910306	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	18162158	26910306	114303125	226	84935											
ANKRD20A3	441425	broad.mit.edu	37	chr9	67965185	67965186	+	Intron	INS	-	T	T													taggtaagcctatagcagtgINStttttttttttgtttgtttg							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67965186	T	T	67965185	6	5	79	0	1	1	1	0	0	0	0	0	649	1392	48	0		0	ANKRD20A3	9	67965185	Intron	INS	-	TCGA-17-Z050-01A-01W-0747-08	41054879	67965185	73248246	227	84936											
TLE1	7088	broad.mit.edu	37	chr9	84300860	84300860	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaacattatgtcacttgttTtaacatctgcctcacatatt	3	9	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84300860	A	A	84300860	1	1	79	0	1	0	0	0	0	0	0	0	16061	1856	64	5		5	TLE1	9	84300860	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	16335675	84300860	56912571	228	84937											
KIAA1529	57653	broad.mit.edu	37	chr9	100136920	100136920	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaaacccctgattgaaCgtggaagcaggtgagaacca	13	8	0	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100136920	T	T	100136920	3	4	79	1	0	0	0	0	1	0	0	0	8310	536	19	4	4805	4	KIAA1529	9	100136920	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	15836060	100136920	41076511	229	84938											
COL15A1	1306	broad.mit.edu	37	chr9	101782503	101782503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccggtgcaggggatggtgCagtgatcaggcagcctctct	16	10	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101782503	A	A	101782503	1	1	79	0	1	0	0	0	0	0	0	0	3704	725	25	3		3	COL15A1	9	101782503	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1645583	101782503	39430928	230	84939											
SVEP1	79987	broad.mit.edu	37	chr9	113163144	113163144	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcgcttacctctagttcaTagccaggctcacactgataa	7	12	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113163144	C	C	113163144	3	2	79	1	0	0	0	0	1	0	0	0	15538	1406	49	5	939	5	SVEP1	9	113163144	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	11380641	113163144	28050287	231	84940											
ASTN2	23245	broad.mit.edu	37	chr9	119249580	119249580	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaataactcatgccattcctCttaggcttaaaatcatcctg	5	11	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119249580	G	G	119249580	1	3	79	0	1	0	0	0	0	0	0	0	1069	928	32	4		4	ASTN2	9	119249580	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6086436	119249580	21963851	232	84941											
ASTN2	23245	broad.mit.edu	37	chr9	119737557	119737557	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagggggttgatggacagctCcacaggcggaaccacaaagc	14	11	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119737557	A	A	119737557	4	1	79	1	0	0	0	0	0	1	0	0	1069	864	30	3	2488	3	ASTN2	9	119737557	Nonsense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	487977	119737557	21475874	233	84942											
TLR4	7099	broad.mit.edu	37	chr9	120471118	120471118	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatcttcattcacttattCattcatacaacagatgtctt	2	11	7	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120471118	A	A	120471118	1	1	79	0	1	0	0	0	0	0	0	0	16076	841	29	3		3	TLR4	9	120471118	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	733561	120471118	20742313	234	84943											
SCAI	286205	broad.mit.edu	37	chr9	127781276	127781276	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacgaatggccaagactaaaTatcaatagagtaagctattc	7	7	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127781276	A	A	127781276	1	1	79	0	1	0	0	0	0	0	0	0	13981	1421	49	5		5	SCAI	9	127781276	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	7310158	127781276	13432155	235	84944											
GARNL3	84253	broad.mit.edu	37	chr9	130152916	130152916	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctgacctatgattctcaatCcaggcctctcggatgaaggt	9	11	3	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130152916	G	G	130152916	1	3	79	0	1	0	0	0	0	0	0	0	6303	870	30	4		4	GARNL3	9	130152916	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2371640	130152916	11060515	236	84945											
SPTAN1	6709	broad.mit.edu	37	chr9	131361377	131361377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttcctgaacctcagatGccttttgtgtgtaaagattt	9	8	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131361377	T	T	131361377	1	4	79	0	1	0	0	0	0	0	0	0	15235	1334	46	3		3	SPTAN1	9	131361377	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1208461	131361377	9852054	237	84946											
CACNA1B	774	broad.mit.edu	37	chr9	140807790	140807790	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctctcctaccctcaccacgGacatggccatggccatggtt	8	17	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140807790	A	A	140807790	1	1	79	0	1	0	0	0	0	0	0	0	2565	1189	41	4		4	CACNA1B	9	140807790	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	9446413	140807790	405641	238	84947											
ITIH5	80760	broad.mit.edu	37	chr10	7627900	7627901	+	Missense_Mutation	DNP	CA	AT	AT													atggtgaatgtacactttccCatccctgatgctgtctggag							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	7627901	AT	AT	7627900	3	1	79	1	0	0	0	0	1	0	0	0	7977	594	21	2	1907	2	ITIH5	10	7627900	Missense_Mutation	DNP	CA	TCGA-17-Z050-01A-01W-0747-08		7627900	127906847	239	84948											
FRMD4A	55691	broad.mit.edu	37	chr10	13825085	13825085	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcttgagctacatgatttGagatgaaagctggcattccc	9	9	1	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13825085	C	C	13825085	1	2	79	0	1	0	0	0	0	0	0	0	6111	1305	45	4		4	FRMD4A	10	13825085	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	6197185	13825085	121709662	240	84949											
DCLRE1C	64421	broad.mit.edu	37	chr10	14976824	14976824	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccaatgtgatataaattatGtgtaactttttttgtttttt	5	3	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14976824	C	C	14976824	1	2	79	0	1	0	0	0	0	0	0	0	4329	1392	48	4		4	DCLRE1C	10	14976824	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1151739	14976824	120557923	241	84950											
ITGA8	8516	broad.mit.edu	37	chr10	15647859	15647859	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcctttttcttgaaaatTctgaatggtgccacaaacgg	7	9	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15647859	C	C	15647859	1	2	79	0	1	0	0	0	0	0	0	0	7952	1798	62	5		5	ITGA8	10	15647859	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	671035	15647859	119886888	242	84951											
ITGA8	8516	broad.mit.edu	37	chr10	15688876	15688876	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttggttcaggtctcctaaGtgtgccatagcactaccgaa	9	11	3	0	rs150699841	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15688876	A	A	15688876	2	1	79	1	0	0	0	0	0	0	0	1	7952	1020	36	4		4	ITGA8	10	15688876	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	41017	15688876	119845871	243	84952											
ARMC3	219681	broad.mit.edu	37	chr10	23270397	23270397	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatgtgtgagaattcaggcAgcaaagattttttcaataat	8	5	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23270397	T	T	23270397	3	4	79	1	0	0	0	0	1	0	0	0	956	188	7	5	1075	5	ARMC3	10	23270397	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	7581521	23270397	112264350	244	84953											
THNSL1	79896	broad.mit.edu	37	chr10	25313016	25313016	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctagtaggagcaacctaCgtagaaagagcacagatact	10	9	0	3	rs150015345		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25313016	T	T	25313016	2	4	79	1	0	0	0	0	0	0	0	1	15985	547	19	4		4	THNSL1	10	25313016	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2042619	25313016	110221731	245	84954											
MTPAP	55149	broad.mit.edu	37	chr10	30656831	30656831	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagagagaagcaatcagtGgccacccactgcagctggag	13	11	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30656831	A	A	30656831	1	1	79	0	1	0	0	0	0	0	0	0	10050	1363	47	4		4	MTPAP	10	30656831	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	5343815	30656831	104877916	246	84955											
CREM	1390	broad.mit.edu	37	chr10	35500800	35500800	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatacaatatatagctggcAagaatggtggcttcttttct	9	6	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35500800	C	C	35500800	1	2	79	0	1	0	0	0	0	0	0	0	3900	145	5	5		5	CREM	10	35500800	3'UTR	SNP	A	TCGA-17-Z050-01A-01W-0747-08	4843969	35500800	100033947	247	84956											
RASGEF1A	221002	broad.mit.edu	37	chr10	43696229	43696229	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggccccttgtctacagcCggtggccggagcttctctcg	13	14	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43696229	T	T	43696229	2	4	79	1	0	0	0	0	0	0	0	1	13177	639	23	4		4	RASGEF1A	10	43696229	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	8195429	43696229	91838518	248	84957											
PARG	8505	broad.mit.edu	37	chr10	51485562	51485562	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttgagagttcctctgTaatattgtgcttgccctctg	9	9	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51485562	G	G	51485562	1	3	79	0	1	0	0	0	0	0	0	0	11542	1653	57	5		5	PARG	10	51485562	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	7789333	51485562	84049185	249	84958											
BICC1	80114	broad.mit.edu	37	chr10	60556365	60556365	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctttctaccattcgggTctacatttaaaggctatttt	5	9	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60556365	G	G	60556365	1	3	79	0	1	0	0	0	0	0	0	0	1433	1682	58	5		5	BICC1	10	60556365	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	9070803	60556365	74978382	250	84959											
DNAJC12	56521	broad.mit.edu	37	chr10	69597639	69597639	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttaaataaaaacttgaaaTactattgtgaaaaagaatac	4	5	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69597639	C	C	69597639	1	2	79	0	1	0	0	0	0	0	0	0	4671	1421	49	5		5	DNAJC12	10	69597639	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	9041274	69597639	65937108	251	84960											
C10orf11	83938	broad.mit.edu	37	chr10	77795795	77795795	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggactgagcgcattcaggaGcctggaggaactcatcttgg	14	9	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77795795	A	A	77795795	3	1	79	1	0	0	0	0	1	0	0	0	1593	971	34	4	83	4	C10orf11	10	77795795	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	8198156	77795795	57738952	252	84961											
NRG3	10718	broad.mit.edu	37	chr10	83635731	83635731	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgggctcccgacccccggTgccaggaactccaagtaccc	11	18	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83635731	A	A	83635731	3	1	79	1	0	0	0	0	1	0	0	0	10744	1696	59	5	637	5	NRG3	10	83635731	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	5839936	83635731	51899016	253	84962											
LRIT2	340745	broad.mit.edu	37	chr10	85985105	85985105	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaagcctgcttccactccAcatcatccccaaagaaaacc	3	17	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85985105	T	T	85985105	1	4	79	0	1	0	0	0	0	0	0	0	9035	174	6	5		5	LRIT2	10	85985105	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	2349374	85985105	49549642	254	84963											
FAM190B	54462	broad.mit.edu	37	chr10	86151413	86151413	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaatcattaacagaccCaacacaccaaagacattgtt	5	10	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86151413	T	T	86151413	1	4	79	0	1	0	0	0	0	0	0	0	5569	609	21	4		4	FAM190B	10	86151413	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	166308	86151413	49383334	255	84964											
CCDC147	159686	broad.mit.edu	37	chr10	106209808	106209808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgtatcttttgttaatgCtgctttatttgccatgttag	7	5	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106209808	A	A	106209808	1	1	79	0	1	0	0	0	0	0	0	0	2807	812	28	3		3	CCDC147	10	106209808	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	20058395	106209808	29324939	256	84965											
SMNDC1	10285	broad.mit.edu	37	chr10	112057270	112057270	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attctctctgcagactacttCaagtatccaaatggggaaga	8	9	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112057270	G	G	112057270	1	3	79	0	1	0	0	0	0	0	0	0	14913	841	29	4		4	SMNDC1	10	112057270	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5847462	112057270	23477477	257	84966											
INPP5F	22876	broad.mit.edu	37	chr10	121579052	121579052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaattttcagagtgcacGtaagtatcaacgcgtaaaac	7	9	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121579052	T	T	121579052	1	4	79	0	1	0	0	0	0	0	0	0	7828	1160	40	3		3	INPP5F	10	121579052	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	9521782	121579052	13955695	258	84967											
DMBT1	1755	broad.mit.edu	37	chr10	124329613	124329613	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcttgagagctgaggaaGccagggaccagccctcccca	12	14	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124329613	A	A	124329613	1	1	79	0	1	0	0	0	0	0	0	0	4617	986	34	4		4	DMBT1	10	124329613	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2750561	124329613	11205134	259	84968											
NAP1L4	4676	broad.mit.edu	37	chr11	2986010	2986010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagaaaaaaaattccaaCaggcttttaaaaaaacaaca	4	6	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2986010	A	A	2986010	1	1	79	0	1	0	0	0	0	0	0	0	10253	493	17	3		3	NAP1L4	11	2986010	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08		2986010	132020506	260	84969											
NUP98	4928	broad.mit.edu	37	chr11	3722157	3722157	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaccactgtttctttttAtgattacaaacggaatgcaa	5	9	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3722157	G	G	3722157	1	3	79	0	1	0	0	0	0	0	0	0	10868	464	16	5		5	NUP98	11	3722157	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	736147	3722157	131284359	261	84970											
STIM1	6786	broad.mit.edu	37	chr11	4076753	4076753	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttgcttgtctcttttcaCagtatacaattggaccgtgg	9	9	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4076753	T	T	4076753	1	4	79	0	1	0	0	0	0	0	0	0	15401	493	17	4		4	STIM1	11	4076753	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	354596	4076753	130929763	262	84971											
OR51F1	256892	broad.mit.edu	37	chr11	4791125	4791125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggttggaaatttagatGttgagttgcttaggatttcc	12	3	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4791125	T	T	4791125	3	4	79	1	0	0	0	0	1	0	0	0	11190	1377	48	3	918	3	OR51F1	11	4791125	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	714372	4791125	130215391	263	84972											
OR52A5	390054	broad.mit.edu	37	chr11	5153259	5153259	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctaggattgcaaaggcaAcaaataggccatatatcttg	8	9	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5153259	C	C	5153259	3	2	79	1	0	0	0	0	1	0	0	0	11204	43	2	5	339	5	OR52A5	11	5153259	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	362134	5153259	129853257	264	84973											
ARFIP2	23647	broad.mit.edu	37	chr11	6500428	6500428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttctccagcaatgcccCgagccacctcatctccaggg	7	17	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6500428	A	A	6500428	3	1	79	1	0	0	0	0	1	0	0	0	857	652	23	1	788	1	ARFIP2	11	6500428	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1347169	6500428	128506088	265	84974											
OR10A6	390093	broad.mit.edu	37	chr11	7950014	7950014	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcaggtccaccacagataAgttcaggagaaacaggtaca	9	10	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7950014	G	G	7950014	2	3	79	1	0	0	0	0	0	0	0	1	10988	69	3	5		5	OR10A6	11	7950014	Silent	SNP	A	TCGA-17-Z050-01A-01W-0747-08	1449586	7950014	127056502	266	84975											
STK33	65975	broad.mit.edu	37	chr11	8435335	8435335	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtctcccaaattcagtaaTagtcacatggaaaagattat	6	8	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8435335	C	C	8435335	1	2	79	0	1	0	0	0	0	0	0	0	15418	1421	49	5		5	STK33	11	8435335	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	485321	8435335	126571181	267	84976											
ASCL3	56676	broad.mit.edu	37	chr11	8959359	8959359	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctctggcagatgatggCggagctgggcgtagccttca	14	11	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8959359	T	T	8959359	3	4	79	1	0	0	0	0	1	0	0	0	1039	768	27	4	199	4	ASCL3	11	8959359	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	524024	8959359	126047157	268	84977											
INSC	387755	broad.mit.edu	37	chr11	15267674	15267674	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgagtacataccagctctCctcatcttcttatttatact	3	12	5	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15267674	A	A	15267674	1	1	79	0	1	0	0	0	0	0	0	0	7834	870	30	3		3	INSC	11	15267674	3'UTR	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6308315	15267674	119738842	269	84978											
OR4C13	283092	broad.mit.edu	37	chr11	49974694	49974694	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctctctacctgtgtctcCcacatcacagttgtcatctt	5	16	5	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49974694	A	A	49974694	2	1	79	1	0	0	0	0	0	0	0	1	11141	610	22	2		2	OR4C13	11	49974694	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	34707020	49974694	85031822	270	84979											
OR4C46	119749	broad.mit.edu	37	chr11	51515552	51515552	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctatggaaagaaggccatcCtattcaatggatgcatgact	9	8	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51515552	G	G	51515552	3	3	79	1	0	0	0	0	1	0	0	0	11145	680	24	4	273	4	OR4C46	11	51515552	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1540858	51515552	83490964	271	84980											
OR4C6	219432	broad.mit.edu	37	chr11	55432993	55432993	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctcctcactgtgatggcCtatgaccgctacgtggccat	9	14	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55432993	T	T	55432993	2	4	79	1	0	0	0	0	0	0	0	1	11146	668	24	4		4	OR4C6	11	55432993	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3917441	55432993	79573523	272	84981											
OR4D10	390197	broad.mit.edu	37	chr11	59245745	59245746	+	Missense_Mutation	DNP	GC	TT	TT													ttcactgtcatctcccctctGctcaaccccttgatctacac							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	59245746	TT	TT	59245745	3	4	79	1	0	0	0	0	1	0	0	0	11148	1306	46	3	845	3	OR4D10	11	59245745	Missense_Mutation	DNP	GC	TCGA-17-Z050-01A-01W-0747-08	3812752	59245745	75760771	273	84982											
MS4A6A	64231	broad.mit.edu	37	chr11	59940658	59940658	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagctgaagccttcatgCctagttgagaggtgaccata	12	9	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59940658	G	G	59940658	1	3	79	0	1	0	0	0	0	0	0	0	9958	754	26	4		4	MS4A6A	11	59940658	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	694913	59940658	75065858	274	84983											
MS4A7	58475	broad.mit.edu	37	chr11	60157005	60157005	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatctatcctcattgccttAttcggagtactattatccaa	4	10	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60157005	G	G	60157005	3	3	79	1	0	0	0	0	1	0	0	0	9960	449	16	5	496	5	MS4A7	11	60157005	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	216347	60157005	74849511	275	84984											
MS4A10	341116	broad.mit.edu	37	chr11	60557990	60557990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccttcttaaggagctggGggtgagcatccacttcccag	12	12	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60557990	T	T	60557990	3	4	79	1	0	0	0	0	1	0	0	0	9949	1246	43	2	184	2	MS4A10	11	60557990	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	400985	60557990	74448526	276	84985											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62482860	62482860	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaactctgccactagaagaGagggaaaccccatcacttgg	10	11	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62482860	C	C	62482860	1	2	79	0	1	0	0	0	0	0	0	0	7342	957	33	4		4	HNRNPUL2	11	62482860	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1924870	62482860	72523656	277	84986											
SPTBN2	6712	broad.mit.edu	37	chr11	66460364	66460364	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcacacagcactgaagGctccacattccctgcacctt	7	17	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66460364	A	A	66460364	1	1	79	0	1	0	0	0	0	0	0	0	15238	1218	42	4		4	SPTBN2	11	66460364	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3977504	66460364	68546152	278	84987											
SUV420H1	51111	broad.mit.edu	37	chr11	67939111	67939111	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccatgtctaagtagcatgTtctcctcaatttctgaaagt	6	10	4	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67939111	C	C	67939111	3	2	79	1	0	0	0	0	1	0	0	0	15532	1725	60	5	1966	5	SUV420H1	11	67939111	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	1478747	67939111	67067405	279	84988											
POLD3	10714	broad.mit.edu	37	chr11	74345735	74345735	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcctgaacctccttctGtcaaggtaaaattatactgg	8	10	2	2	rs137901782	byFrequency;by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74345735	A	A	74345735	3	1	79	1	0	0	0	0	1	0	0	0	12287	1377	48	4	1152	4	POLD3	11	74345735	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	6406624	74345735	60660781	280	84989											
DLG2	1740	broad.mit.edu	37	chr11	83177818	83177818	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgggcaacttgtaaccGcttgatagcatttcctgata	10	9	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83177818	A	A	83177818	3	1	79	1	0	0	0	0	1	0	0	0	4595	1086	38	4	277	4	DLG2	11	83177818	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	8832083	83177818	51828698	281	84990											
RAB38	23682	broad.mit.edu	37	chr11	87908545	87908545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgctccttgtgcgggGcctgcatcctggcggccggc	16	14	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87908545	T	T	87908545	3	4	79	1	0	0	0	0	1	0	0	0	13036	1203	42	3	639	3	RAB38	11	87908545	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4730727	87908545	47097971	282	84991											
NAALAD2	10003	broad.mit.edu	37	chr11	89902143	89902143	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcattgcttatatcaactCggattcatctatagaaggta	7	7	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89902143	T	T	89902143	3	4	79	1	0	0	0	0	1	0	0	0	10222	893	31	4	1371	4	NAALAD2	11	89902143	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1993598	89902143	45104373	283	84992											
CWC15	51503	broad.mit.edu	37	chr11	94704546	94704546	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagtgttggtacctcgggtTggacgatccctatttttctc	10	9	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94704546	G	G	94704546	2	3	79	1	0	0	0	0	0	0	0	1	4100	1799	63	5		5	CWC15	11	94704546	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	4802403	94704546	40301970	284	84993											
CNTN5	53942	broad.mit.edu	37	chr11	100211307	100211307	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaaatacgttatatcactTcacagtgagggcttacaatg	9	7	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100211307	A	A	100211307	3	1	79	1	0	0	0	0	1	0	0	0	3676	1783	62	5	2921	5	CNTN5	11	100211307	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	5506761	100211307	34795209	285	84994											
MMP1	4312	broad.mit.edu	37	chr11	102666049	102666049	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataaaatacctagagttAgttttgcctagtattagaaa	6	4	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102666049	G	G	102666049	1	3	79	0	1	0	0	0	0	0	0	0	9741	435	15	5		5	MMP1	11	102666049	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	2454742	102666049	32340467	286	84995											
MMP12	4321	broad.mit.edu	37	chr11	102734913	102734913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcatcaattttaggccCgattccttggaagttcttgg	10	9	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102734913	A	A	102734913	3	1	79	1	0	0	0	0	1	0	0	0	9744	652	23	1	144	1	MMP12	11	102734913	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	68864	102734913	32271603	287	84996											
WNK1	65125	broad.mit.edu	37	chr12	990831	990831	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gataaatctattactaccgaGatttgagttatcttttcgat	6	6	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	990831	T	T	990831	1	4	79	0	1	0	0	0	0	0	0	0	17504	957	33	3		3	WNK1	12	990831	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08		990831	132861064	288	84997											
WNK1	65125	broad.mit.edu	37	chr12	990843	990843	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actaccgagatttgagttatCttttcgattcacagagtact	7	8	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	990843	T	T	990843	1	4	79	0	1	0	0	0	0	0	0	0	17504	928	32	4		4	WNK1	12	990843	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	12	990843	132861052	289	84998											
ERC1	23085	broad.mit.edu	37	chr12	1553966	1553966	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtgaaaatccagttgcTgtgtaggttgatgcagtggg	15	6	0	2	rs75319737	by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1553966	C	C	1553966	1	2	79	0	1	0	0	0	0	0	0	0	5252	1595	55	5		5	ERC1	12	1553966	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	563123	1553966	132297929	290	84999											
VWF	7450	broad.mit.edu	37	chr12	6145657	6145657	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatctgttctcatgccggaCctaagagaaaagaatccaaa	7	10	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6145657	T	T	6145657	3	4	79	1	0	0	0	0	1	0	0	0	17373	521	18	4	6134	4	VWF	12	6145657	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	4591691	6145657	127706238	291	85000											
NCAPD2	9918	broad.mit.edu	37	chr12	6626500	6626500	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatggatgatgtgggacttGagcagattcttctcttccta	10	7	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6626500	C	C	6626500	1	2	79	0	1	0	0	0	0	0	0	0	10300	1305	45	4		4	NCAPD2	12	6626500	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	480843	6626500	127225395	292	85001											
RBP5	83758	broad.mit.edu	37	chr12	7277511	7277511	+	Intron	SNP	G	T	T													caccctactctttgttttttGtgtttttttgagacaagttc							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7277511	T	T	7277511	1	4	79	0	1	0	0	0	0	0	0	0	13267	1392	48	3		3	RBP5	12	7277511	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	651011	7277511	126574384	293	85002	386	2									
RBP5	83758	broad.mit.edu	37	chr12	7277513	7277513	+	Intron	SNP	G	T	T													ccctactctttgttttttgtGtttttttgagacaagttctt							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7277513	T	T	7277513	1	4	79	0	1	0	0	0	0	0	0	0	13267	1392	48	3		3	RBP5	12	7277513	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2	7277513	126574382	294	85003	386	2									
C3AR1	719	broad.mit.edu	37	chr12	8211099	8211099	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttaagtgcccttgctggGtcccaacccccagagattcc	9	14	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8211099	A	A	8211099	1	1	79	0	1	0	0	0	0	0	0	0	2227	1276	44	4		4	C3AR1	12	8211099	3'UTR	SNP	G	TCGA-17-Z050-01A-01W-0747-08	933586	8211099	125640796	295	85004											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	79	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	17187185	25398284	108453611	296	85005											
DENND5B	160518	broad.mit.edu	37	chr12	31566300	31566300	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactgaagaagccagtttgtCagtttatgcaacttgttttg	9	6	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31566300	T	T	31566300	1	4	79	0	1	0	0	0	0	0	0	0	4477	841	29	4		4	DENND5B	12	31566300	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6168016	31566300	102285595	297	85006											
C12orf35	55196	broad.mit.edu	37	chr12	32138481	32138481	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggagtctaaaacatacaAcattctaaggaatgttaaag	7	6	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32138481	G	G	32138481	3	3	79	1	0	0	0	0	1	0	0	0	1695	43	2	5	4594	5	C12orf35	12	32138481	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	572181	32138481	101713414	298	85007											
LRRK2	120892	broad.mit.edu	37	chr12	40734098	40734098	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcattttctggcagatAcctccactcagccatgatta	7	12	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40734098	C	C	40734098	3	2	79	1	0	0	0	0	1	0	0	0	9120	391	14	5	6113	5	LRRK2	12	40734098	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	8595617	40734098	93117797	299	85008											
PFKM	5213	broad.mit.edu	37	chr12	48535581	48535581	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atataactaagtttaacattCagggccttgtcatcattggg	8	7	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48535581	T	T	48535581	4	4	79	1	0	0	0	0	0	1	0	0	11860	827	29	4	1750	4	PFKM	12	48535581	Nonsense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	7801483	48535581	85316314	300	85009											
RACGAP1	29127	broad.mit.edu	37	chr12	50384426	50384426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataataagaagtctaagaaaGtagttgttttttatttccta	6	3	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50384426	A	A	50384426	1	1	79	0	1	0	0	0	0	0	0	0	13085	1044	36	4		4	RACGAP1	12	50384426	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1848845	50384426	83467469	301	85010											
KRT75	9119	broad.mit.edu	37	chr12	52824482	52824482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgacctgggtctgcaactggGacagctcctgcagggcagta	14	12	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52824482	T	T	52824482	3	4	79	1	0	0	0	0	1	0	0	0	8559	1174	41	3	797	3	KRT75	12	52824482	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2440056	52824482	81027413	302	85011											
PCBP2	5094	broad.mit.edu	37	chr12	53859589	53859589	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagattccatctactgcctCaatctctggcctcccccatt	5	16	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53859589	T	T	53859589	1	4	79	0	1	0	0	0	0	0	0	0	11595	841	29	4		4	PCBP2	12	53859589	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1035107	53859589	79992306	303	85012											
PCBP2	5094	broad.mit.edu	37	chr12	53859816	53859816	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcccatccaaaattgtctCactcctctctcccaagtagc	3	17	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53859816	A	A	53859816	1	1	79	0	1	0	0	0	0	0	0	0	11595	841	29	3		3	PCBP2	12	53859816	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	227	53859816	79992079	304	85013											
SILV	6490	broad.mit.edu	37	chr12	56352098	56352098	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaattatgatagagttgaAgggggctaggtgctaagaaa	14	2	0	5			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56352098	G	G	56352098	1	3	79	0	1	0	0	0	0	0	0	0	14435	87	3	5		5	SILV	12	56352098	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	2492282	56352098	77499797	305	85014											
MYO1A	4640	broad.mit.edu	37	chr12	57430774	57430774	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggatctgactctttcgcatCagttggtagtgggtgcggca	14	8	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57430774	T	T	57430774	2	4	79	1	0	0	0	0	0	0	0	1	10162	813	29	4		4	MYO1A	12	57430774	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1078676	57430774	76421121	306	85015											
KIF5A	3798	broad.mit.edu	37	chr12	57961078	57961078	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtggagggactcaaaagTgagcaaggaaactgtacccc	15	8	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57961078	C	C	57961078	1	2	79	0	1	0	0	0	0	0	0	0	8375	1711	59	5		5	KIF5A	12	57961078	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	530304	57961078	75890817	307	85016											
TBC1D15	64786	broad.mit.edu	37	chr12	72289716	72289716	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtacttattattgcttaatCttatttttagattgatttgg	6	3	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72289716	A	A	72289716	1	1	79	0	1	0	0	0	0	0	0	0	15723	928	32	3		3	TBC1D15	12	72289716	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	14328638	72289716	61562179	308	85017											
NAV3	89795	broad.mit.edu	37	chr12	78531076	78531076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccagctttgtgggagtGccacttctctggaggaaaga	12	10	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78531076	T	T	78531076	3	4	79	1	0	0	0	0	1	0	0	0	10279	1319	46	3	4635	3	NAV3	12	78531076	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	6241360	78531076	55320819	309	85018											
PPFIA2	8499	broad.mit.edu	37	chr12	81769547	81769547	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatgagaacgcacagaccaGaagaaaaccaagacagagat	10	8	0	7			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81769547	C	C	81769547	1	2	79	0	1	0	0	0	0	0	0	0	12406	957	33	4		4	PPFIA2	12	81769547	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3238471	81769547	52082348	310	85019											
TMTC2	160335	broad.mit.edu	37	chr12	83251423	83251423	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttgcttactcctttgccAccatttaaaaagcaaattta	3	10	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83251423	G	G	83251423	1	3	79	0	1	0	0	0	0	0	0	0	16384	174	6	5		5	TMTC2	12	83251423	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	1481876	83251423	50600472	311	85020											
EEA1	8411	broad.mit.edu	37	chr12	93213295	93213295	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttccaaatcattctgtaaaGaattgaaaactactacttta	4	7	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93213295	T	T	93213295	1	4	79	0	1	0	0	0	0	0	0	0	4961	957	33	3		3	EEA1	12	93213295	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	9961872	93213295	40638600	312	85021											
CDK17	5128	broad.mit.edu	37	chr12	96682801	96682802	+	Intron	DNP	CC	AG	AG													aaacctaggtaatctaattcCcatgccagaactcattaatc							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	96682802	AG	AG	96682801	1	1	79	0	1	0	0	0	0	0	0	0	3163	638	22	2		2	CDK17	12	96682801	Intron	DNP	CC	TCGA-17-Z050-01A-01W-0747-08	3469506	96682801	37169094	313	85022											
KIAA1033	23325	broad.mit.edu	37	chr12	105508114	105508114	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgtaacaatttacttttTattttgtttttactcatgaa	3	5	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105508114	G	G	105508114	1	3	79	0	1	0	0	0	0	0	0	0	8276	1769	61	5		5	KIAA1033	12	105508114	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	8825313	105508114	28343781	314	85023											
PTPN11	5781	broad.mit.edu	37	chr12	112939963	112939963	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaaaagcaagaggaaaGggcacgaatatacaaatatt	9	5	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112939963	C	C	112939963	3	2	79	1	0	0	0	0	1	0	0	0	12886	1000	35	4	1669	4	PTPN11	12	112939963	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	7431849	112939963	20911932	315	85024											
PIWIL1	9271	broad.mit.edu	37	chr12	130832712	130832712	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataacccaaatgacccaattGatattccaagtcacaggttt	5	10	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832712	T	T	130832712	3	4	79	1	0	0	0	0	1	0	0	0	12052	1290	45	3	740	3	PIWIL1	12	130832712	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	17892749	130832712	3019183	316	85025											
CDK8	1024	broad.mit.edu	37	chr13	26959333	26959333	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacttagcatgatttttttTttattattttacagctgaca	4	5	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26959333	A	A	26959333	1	1	79	0	1	0	0	0	0	0	0	0	3180	1856	64	5		5	CDK8	13	26959333	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08		26959333	88210545	317	85026											
FRY	10129	broad.mit.edu	37	chr13	32814025	32814025	+	Intron	DEL	T	-	-													cctacctggcagaggtaagcTttttttttttgttttttgag							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32814025	-	-	32814025	6	5	79	0	1	1	0	1	0	0	0	0	6123	1624	56	0		0	FRY	13	32814025	Intron	DEL	T	TCGA-17-Z050-01A-01W-0747-08	5854692	32814025	82355853	318	85027											
DGKH	160851	broad.mit.edu	37	chr13	42784793	42784795	+	In_Frame_Del	DEL	AAC	-	-													gcagaagtgtgattctggtaAaccagttctccgaacccatt							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42784795	-	-	42784793	7	5	79	1	0	1	0	1	0	0	0	0	4510	14	1	0	3000	0	DGKH	13	42784793	In_Frame_Del	DEL	AAC	TCGA-17-Z050-01A-01W-0747-08	9970768	42784793	72385085	319	85028											
SLITRK1	114798	broad.mit.edu	37	chr13	84455261	84455261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattccagatcgtccagccCcagaaaagtctgctttcgaa	7	12	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84455261	A	A	84455261	3	1	79	1	0	0	0	0	1	0	0	0	14856	623	22	2	1712	2	SLITRK1	13	84455261	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	41670468	84455261	30714617	320	85029											
GPC5	2262	broad.mit.edu	37	chr13	93518808	93518808	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatatttatgaaaagatatgTtacactaacttctcagaagc	5	6	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93518808	C	C	93518808	1	2	79	0	1	0	0	0	0	0	0	0	6666	1740	60	5		5	GPC5	13	93518808	3'UTR	SNP	T	TCGA-17-Z050-01A-01W-0747-08	9063547	93518808	21651070	321	85030											
NALCN	259232	broad.mit.edu	37	chr13	101763102	101763102	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggcctttcaagcagtgaCcatgataaaatcaaaataaa	6	8	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101763102	T	T	101763102	1	4	79	0	1	0	0	0	0	0	0	0	10242	522	18	4		4	NALCN	13	101763102	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	8244294	101763102	13406776	322	85031											
CDH24	64403	broad.mit.edu	37	chr14	23517523	23517523	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgggcgccgggggggccGccccgtccgggttctgcaag	20	15	1	0	rs150958098	byFrequency	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23517523	A	A	23517523	3	1	79	1	0	0	0	0	1	0	0	0	3139	1087	38	4	337	4	CDH24	14	23517523	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08		23517523	83832017	323	85032											
PRKD1	5587	broad.mit.edu	37	chr14	30100286	30100286	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtatgtaaactttcaaagaAaattcatgccaagaacatgt	6	6	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30100286	T	T	30100286	1	4	79	0	1	0	0	0	0	0	0	0	12624	29	1	5		5	PRKD1	14	30100286	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	6582763	30100286	77249254	324	85033											
PRKD1	5587	broad.mit.edu	37	chr14	30133126	30133126	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaaaaagtgattccaataTtagtgtaaagtagaaattta	6	2	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30133126	C	C	30133126	1	2	79	0	1	0	0	0	0	0	0	0	12624	1508	52	5		5	PRKD1	14	30133126	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	32840	30133126	77216414	325	85034											
HEATR5A	25938	broad.mit.edu	37	chr14	31765218	31765218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagacaaaataaacactGtgatagcagtaagtagactg	10	5	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31765218	T	T	31765218	3	4	79	1	0	0	0	0	1	0	0	0	7098	1377	48	3	636	3	HEATR5A	14	31765218	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1632092	31765218	75584322	326	85035											
CLEC14A	161198	broad.mit.edu	37	chr14	38724650	38724650	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagctggaagggcgcgCgatagctcaagttagaggcg	17	8	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38724650	T	T	38724650	3	4	79	1	0	0	0	0	1	0	0	0	3531	768	27	4	898	4	CLEC14A	14	38724650	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6959432	38724650	68624890	327	85036											
FSCB	84075	broad.mit.edu	37	chr14	44975840	44975840	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgaaggtatgtttggtggAatttctacatcctgaacact	9	7	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44975840	C	C	44975840	3	2	79	1	0	0	0	0	1	0	0	0	6126	242	9	5	2130	5	FSCB	14	44975840	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	6251190	44975840	62373700	328	85037											
SMOC1	64093	broad.mit.edu	37	chr14	70420144	70420144	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctctttcagatgctggCcagagcaagtgtcgcctgga	11	12	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70420144	T	T	70420144	2	4	79	1	0	0	0	0	0	0	0	1	14915	726	26	4		4	SMOC1	14	70420144	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	25444304	70420144	36929396	329	85038											
COQ6	51004	broad.mit.edu	37	chr14	74420334	74420334	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacttagctttctagtgtatCccatggggcagagtcatcag	10	10	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74420334	T	T	74420334	1	4	79	0	1	0	0	0	0	0	0	0	3781	870	30	4		4	COQ6	14	74420334	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	4000190	74420334	32929206	330	85039											
POMT2	29954	broad.mit.edu	37	chr14	77765665	77765665	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatagaacatagcaggaaaGaaacaggaaaaagcccctgg	12	7	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77765665	C	C	77765665	1	2	79	0	1	0	0	0	0	0	0	0	12341	957	33	4		4	POMT2	14	77765665	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	3345331	77765665	29583875	331	85040											
POMT2	29954	broad.mit.edu	37	chr14	77769182	77769182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggatggagtttctgacctgtCggcgcaagagttgtacttga	14	7	1	3	rs140785104	byFrequency	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77769182	A	A	77769182	3	1	79	1	0	0	0	0	1	0	0	0	12341	884	31	3	1668	3	POMT2	14	77769182	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3517	77769182	29580358	332	85041											
AHSA1	10598	broad.mit.edu	37	chr14	77934887	77934887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgccattacccccagaaCtttttctctttgctgtaatt	4	11	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77934887	A	A	77934887	1	1	79	0	1	0	0	0	0	0	0	0	418	580	20	3		3	AHSA1	14	77934887	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	165705	77934887	29414653	333	85042											
SEL1L	6400	broad.mit.edu	37	chr14	81943369	81943369	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggggtggagctggccGtggccctggaggcctgggtg	21	10	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81943369	A	A	81943369	3	1	79	1	0	0	0	0	1	0	0	0	14123	1144	40	4	56	4	SEL1L	14	81943369	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4008482	81943369	25406171	334	85043											
FOXN3	1112	broad.mit.edu	37	chr14	89878562	89878562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcgtccaggtcctggaCggggctgacactcctgagga	14	12	1	2	rs61754094		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89878562	A	A	89878562	3	1	79	1	0	0	0	0	1	0	0	0	6081	536	19	3	1237	3	FOXN3	14	89878562	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	7935193	89878562	17470978	335	85044											
TTC7B	145567	broad.mit.edu	37	chr14	91121558	91121558	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatttctgatgagtcactttGaaaatgactctcaaatctcc	6	9	4	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91121558	T	T	91121558	1	4	79	0	1	0	0	0	0	0	0	0	16839	1305	45	3		3	TTC7B	14	91121558	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1242996	91121558	16227982	336	85045											
SERPINA3	12	broad.mit.edu	37	chr14	95081053	95081053	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgtctctgggggcccAtaataccaccctgacagaga	9	14	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95081053	G	G	95081053	3	3	79	1	0	0	0	0	1	0	0	0	14203	217	8	5	277	5	SERPINA3	14	95081053	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	3959495	95081053	12268487	337	85046											
CLMN	79789	broad.mit.edu	37	chr14	95670140	95670140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcttcatcgtggcgggCtgtactctctaaagcaccat	8	12	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95670140	A	A	95670140	3	1	79	1	0	0	0	0	1	0	0	0	3574	797	28	3	1482	3	CLMN	14	95670140	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	589087	95670140	11679400	338	85047											
RYR3	6263	broad.mit.edu	37	chr15	34117697	34117697	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatgtgttagtttatttacGataacacaggggcaggatat	11	4	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34117697	A	A	34117697	1	1	79	0	1	0	0	0	0	0	0	0	13881	1073	37	4		4	RYR3	15	34117697	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08		34117697	68413695	339	85048											
TMEM62	80021	broad.mit.edu	37	chr15	43427706	43427706	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaattcttgtgtaaacctAcaggagacctgacagatgcc	8	10	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43427706	G	G	43427706	1	3	79	0	1	0	0	0	0	0	0	0	16312	406	14	5		5	TMEM62	15	43427706	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	9310009	43427706	59103686	340	85049											
MYO5C	55930	broad.mit.edu	37	chr15	52556515	52556515	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaaacaaacattttcccaGattagaatactgcatctctt	3	9	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52556515	T	T	52556515	1	4	79	0	1	0	0	0	0	0	0	0	10174	957	33	3		3	MYO5C	15	52556515	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	9128809	52556515	49974877	341	85050											
UNC13C	440279	broad.mit.edu	37	chr15	54707113	54707113	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgtggtatatatgtaaaAtgctgtattttggtttttag	9	2	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54707113	G	G	54707113	1	3	79	0	1	0	0	0	0	0	0	0	17112	116	4	5		5	UNC13C	15	54707113	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	2150598	54707113	47824279	342	85051											
UNC13C	440279	broad.mit.edu	37	chr15	54793050	54793050	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttccagcagacatctgaGcatgctctcttttcttgctc	7	13	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54793050	A	A	54793050	2	1	79	1	0	0	0	0	0	0	0	1	17112	962	34	4		4	UNC13C	15	54793050	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	85937	54793050	47738342	343	85052											
GCOM1	145781	broad.mit.edu	37	chr15	57953691	57953691	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacagaaacagctcttaaTactgcagcttttagaaaaga	7	8	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57953691	C	C	57953691	3	2	79	1	0	0	0	0	1	0	0	0	6367	1406	49	5	1205	5	GCOM1	15	57953691	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	3160641	57953691	44577701	344	85053											
CILP	8483	broad.mit.edu	37	chr15	65489854	65489854	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaggggactgtgttgtAgtcatatcgatccccctcaa	11	9	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65489854	T	T	65489854	3	4	79	1	0	0	0	0	1	0	0	0	3460	420	15	5	788	5	CILP	15	65489854	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	7536163	65489854	37041538	345	85054											
AAGAB	79719	broad.mit.edu	37	chr15	67501083	67501083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcacactttcagtccttgGttggcttgagaaaagagtaa	10	8	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67501083	T	T	67501083	1	4	79	0	1	0	0	0	0	0	0	0	15	1276	44	3		3	AAGAB	15	67501083	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2011229	67501083	35030309	346	85055											
MYO9A	4649	broad.mit.edu	37	chr15	72119337	72119337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcgcaacttgctggaagGttcagacttgccagctgtct	10	11	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72119337	T	T	72119337	3	4	79	1	0	0	0	0	1	0	0	0	10178	1261	44	3	419	3	MYO9A	15	72119337	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4618254	72119337	30412055	347	85056											
TMEM202	338949	broad.mit.edu	37	chr15	72700151	72700151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgactacagtatcacctGctaaagatgaagggccaagg	12	9	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72700151	T	T	72700151	3	4	79	1	0	0	0	0	1	0	0	0	16250	1319	46	3	757	3	TMEM202	15	72700151	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	580814	72700151	29831241	348	85057											
ISLR2	57611	broad.mit.edu	37	chr15	74426123	74426123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggctccctgttggtgcCcctcctgagtgccaaggagg	13	12	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74426123	A	A	74426123	3	1	79	1	0	0	0	0	1	0	0	0	7929	623	22	2	1030	2	ISLR2	15	74426123	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1725972	74426123	28105269	349	85058											
PPCDC	60490	broad.mit.edu	37	chr15	75340919	75340919	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcatgcgggcctgggaccGcagcaagcccctgctcttct	12	16	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75340919	A	A	75340919	3	1	79	1	0	0	0	0	1	0	0	0	12400	1087	38	4	400	4	PPCDC	15	75340919	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	914796	75340919	27190473	350	85059											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84690439	84690439	+	Intron	DEL	T	-	-													ataataattcaatagctaagTtttttttatcacttactgta							TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84690439	-	-	84690439	6	5	79	0	1	1	0	1	0	0	0	0	276	1740	60	0		0	ADAMTSL3	15	84690439	Intron	DEL	T	TCGA-17-Z050-01A-01W-0747-08	9349520	84690439	17840953	351	85060											
ADAMTS17	170691	broad.mit.edu	37	chr15	100695409	100695409	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaagttttcaaggtcatctCggctgcaggaggaccaagag	14	8	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100695409	T	T	100695409	3	4	79	1	0	0	0	0	1	0	0	0	262	884	31	4	2045	4	ADAMTS17	15	100695409	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	16004970	100695409	1835983	352	85061											
GRIN2A	2903	broad.mit.edu	37	chr16	9862656	9862656	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacatcaagaacccaagcGcttttctaaacctgcttgca	7	12	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9862656	A	A	9862656	1	1	79	0	1	0	0	0	0	0	0	0	6845	1102	38	4		4	GRIN2A	16	9862656	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08		9862656	80492097	353	85062											
SNX29	92017	broad.mit.edu	37	chr16	12162866	12162866	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctttgtcttatggagaacAtgtagtgagaaaagtgacct	11	5	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12162866	T	T	12162866	1	4	79	0	1	0	0	0	0	0	0	0	15012	232	8	5		5	SNX29	16	12162866	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	2300210	12162866	78191887	354	85063											
MYH11	4629	broad.mit.edu	37	chr16	15815539	15815539	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaggcatatccggggtcagCgtcactgaattgtaaatacc	10	10	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15815539	T	T	15815539	1	4	79	0	1	0	0	0	0	0	0	0	10125	783	27	4		4	MYH11	16	15815539	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3652673	15815539	74539214	355	85064											
ABCC6	368	broad.mit.edu	37	chr16	16244113	16244113	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaccctgtgggggagaggGagacagagaggctctttgga	18	6	1	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16244113	A	A	16244113	1	1	79	0	1	0	0	0	0	0	0	0	57	1189	41	4		4	ABCC6	16	16244113	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	428574	16244113	74110640	356	85065											
XYLT1	64131	broad.mit.edu	37	chr16	17228543	17228543	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcccaatgatttcctgaTtcaccacggcttcaaacttg	7	13	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17228543	G	G	17228543	3	3	79	1	0	0	0	0	1	0	0	0	17590	1493	52	5	1081	5	XYLT1	16	17228543	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	984430	17228543	73126210	357	85066											
COG7	91949	broad.mit.edu	37	chr16	23457011	23457011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatagctggagtgctgggCagaatcttgagtgatggttg	16	5	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23457011	T	T	23457011	1	4	79	0	1	0	0	0	0	0	0	0	3695	725	25	4		4	COG7	16	23457011	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6228468	23457011	66897742	358	85067											
CD2BP2	10421	broad.mit.edu	37	chr16	30365165	30365165	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcccaccaactgccacgggAgcaggcccagcatctgccac	9	18	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30365165	T	T	30365165	1	4	79	0	1	0	0	0	0	0	0	0	3025	319	11	5		5	CD2BP2	16	30365165	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	6908154	30365165	59989588	359	85068											
STX1B	112755	broad.mit.edu	37	chr16	31008314	31008314	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtccttgcagcggtcccGgtacttggactgggtcgcgt	15	13	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31008314	T	T	31008314	2	4	79	1	0	0	0	0	0	0	0	1	15462	1115	39	1		1	STX1B	16	31008314	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	643149	31008314	59346439	360	85069											
ITGAX	3687	broad.mit.edu	37	chr16	31391671	31391671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggatttcaccctgaagGgcaacctcagctttggctgg	12	11	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31391671	T	T	31391671	3	4	79	1	0	0	0	0	1	0	0	0	7959	1232	43	2	3251	2	ITGAX	16	31391671	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	383357	31391671	58963082	361	85070											
NKD1	85407	broad.mit.edu	37	chr16	50667594	50667594	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggagctgcccgccttgGtggtgtatgagagccaggcc	17	11	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50667594	C	C	50667594	3	2	79	1	0	0	0	0	1	0	0	0	10536	1261	44	4	1353	4	NKD1	16	50667594	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	19275923	50667594	39687159	362	85071											
SLC6A2	6530	broad.mit.edu	37	chr16	55730216	55730216	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctgggctgttgtgtttttCgtcatgctcctggcgctggg	14	9	2	0	rs149035289		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55730216	T	T	55730216	2	4	79	1	0	0	0	0	0	0	0	1	14797	883	31	4		4	SLC6A2	16	55730216	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5062622	55730216	34624537	363	85072											
PMFBP1	83449	broad.mit.edu	37	chr16	72158693	72158693	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcctcaaggaggttctcTtttaaggcggccatctcctc	9	13	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72158693	C	C	72158693	2	2	79	1	0	0	0	0	0	0	0	1	12229	1606	56	5		5	PMFBP1	16	72158693	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	16428477	72158693	18196060	364	85073											
RFWD3	55159	broad.mit.edu	37	chr16	74683196	74683196	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagagcctgactcactacAgcttcccatttctaactgac	7	13	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74683196	T	T	74683196	1	4	79	0	1	0	0	0	0	0	0	0	13369	203	7	5		5	RFWD3	16	74683196	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	2524503	74683196	15671557	365	85074											
C16orf46	123775	broad.mit.edu	37	chr16	81094673	81094673	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggggaggagagaaagagaGagtggggggtgggtgggaaa	24	1	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81094673	T	T	81094673	1	4	79	0	1	0	0	0	0	0	0	0	1829	957	33	3		3	C16orf46	16	81094673	3'UTR	SNP	G	TCGA-17-Z050-01A-01W-0747-08	6411477	81094673	9260080	366	85075											
ANKFY1	51479	broad.mit.edu	37	chr17	4077128	4077128	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacctccccagtggggagcaGacccaagggtgcactgcacc	12	15	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4077128	C	C	4077128	1	2	79	0	1	0	0	0	0	0	0	0	626	957	33	4		4	ANKFY1	17	4077128	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08		4077128	77118082	367	85076											
MYH4	4622	broad.mit.edu	37	chr17	10351894	10351894	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaaaattgaaaagatgtCtccctaccatttttgaaata	5	6	1	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10351894	A	A	10351894	1	1	79	0	1	0	0	0	0	0	0	0	10131	928	32	3		3	MYH4	17	10351894	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6274766	10351894	70843316	368	85077											
TOM1L2	146691	broad.mit.edu	37	chr17	17782831	17782831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggactatcaacaacagGgccactggacctgtcccgcc	9	15	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17782831	T	T	17782831	1	4	79	0	1	0	0	0	0	0	0	0	16476	1247	43	2		2	TOM1L2	17	17782831	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	7430937	17782831	63412379	369	85078											
SLC47A2	146802	broad.mit.edu	37	chr17	19607464	19607464	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccatccccactcggacacAgaccccgatgctgagcccca	8	19	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19607464	T	T	19607464	3	4	79	1	0	0	0	0	1	0	0	0	14762	188	7	5	791	5	SLC47A2	17	19607464	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	1824633	19607464	61587746	370	85079											
LGALS9	3965	broad.mit.edu	37	chr17	25972923	25972923	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagtgcagagcgcccctGgacagatgttctctgtaagt	11	11	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25972923	T	T	25972923	4	4	79	1	0	0	0	0	0	1	0	0	8820	1349	47	2	639	2	LGALS9	17	25972923	Nonsense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	6365459	25972923	55222287	371	85080											
CPD	1362	broad.mit.edu	37	chr17	28758706	28758706	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaattttattgttttctcttCtctggcagtattctgaaaag	6	6	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28758706	A	A	28758706	1	1	79	0	1	0	0	0	0	0	0	0	3830	928	32	3		3	CPD	17	28758706	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2785783	28758706	52436504	372	85081											
TMEM132E	124842	broad.mit.edu	37	chr17	32964224	32964224	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgagcctctggctctcctAcagtgatggcaccacagccc	9	16	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32964224	G	G	32964224	3	3	79	1	0	0	0	0	1	0	0	0	16171	391	14	5	1966	5	TMEM132E	17	32964224	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	4205518	32964224	48230986	373	85082											
CCT6B	10693	broad.mit.edu	37	chr17	33288358	33288358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatatattgacagccaaagCtgcccgggcccgcgccacct	10	16	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33288358	A	A	33288358	3	1	79	1	0	0	0	0	1	0	0	0	2988	797	28	3	1593	3	CCT6B	17	33288358	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	324134	33288358	47906852	374	85083											
CCL23	6368	broad.mit.edu	37	chr17	34340259	34340259	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcttcctggtcttgatcCgtgtgtccagcttcagcatt	8	11	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34340259	T	T	34340259	3	4	79	1	0	0	0	0	1	0	0	0	2923	652	23	4	25	4	CCL23	17	34340259	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1051901	34340259	46854951	375	85084											
MYO19	80179	broad.mit.edu	37	chr17	34861146	34861146	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaattacctcctcttggAgaaaggtctgcgcctggccc	10	12	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34861146	G	G	34861146	3	3	79	1	0	0	0	0	1	0	0	0	10161	304	11	5	1049	5	MYO19	17	34861146	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	520887	34861146	46334064	376	85085											
TMEM49	81671	broad.mit.edu	37	chr17	57917156	57917156	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actggttgtcctggatgtttGaaaagttggtcgttgtcatg	13	5	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57917156	C	C	57917156	3	2	79	1	0	0	0	0	1	0	0	0	16296	1291	45	4	1147	4	TMEM49	17	57917156	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	23056010	57917156	23278054	377	85086											
ENPP7	339221	broad.mit.edu	37	chr17	77709208	77709208	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacgaccgtggacaaacggGctggcgacctggttgaattc	14	10	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77709208	A	A	77709208	3	1	79	1	0	0	0	0	1	0	0	0	5177	1203	42	4	776	4	ENPP7	17	77709208	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	19792052	77709208	3486002	378	85087											
CBX2	84733	broad.mit.edu	37	chr17	77753163	77753163	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcctctgctttgcagacAtaacagctgggagccggagg	13	11	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77753163	G	G	77753163	3	3	79	1	0	0	0	0	1	0	0	0	2744	217	8	5	129	5	CBX2	17	77753163	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	43955	77753163	3442047	379	85088											
CCDC40	55036	broad.mit.edu	37	chr17	78073488	78073488	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccatcctggaccgcgtgCgggacgagtacccccagttc	11	17	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78073488	A	A	78073488	2	1	79	1	0	0	0	0	0	0	0	1	2839	759	27	3		3	CCDC40	17	78073488	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	320325	78073488	3121722	380	85089											
NPLOC4	55666	broad.mit.edu	37	chr17	79589368	79589368	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatcactacacataccataCacaccagacactactagaag	4	13	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79589368	T	T	79589368	1	4	79	0	1	0	0	0	0	0	0	0	10681	493	17	4		4	NPLOC4	17	79589368	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1515880	79589368	1605842	381	85090											
FAM38B	63895	broad.mit.edu	37	chr18	10672859	10672859	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaatgatggtaatatccaTgaaattattttctagaaggg	8	4	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10672859	A	A	10672859	3	1	79	1	0	0	0	0	1	0	0	0	5606	1464	51	5	432	5	FAM38B	18	10672859	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08		10672859	67404389	382	85091											
CDH2	1000	broad.mit.edu	37	chr18	25593716	25593716	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttgccacttttcctgggtCtctttgtcttgggcatatat	8	10	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25593716	T	T	25593716	2	4	79	1	0	0	0	0	0	0	0	1	3135	912	32	4		4	CDH2	18	25593716	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	14920857	25593716	52483532	383	85092											
DSC1	1823	broad.mit.edu	37	chr18	28736254	28736254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatggctagtcagcaaagCatttctattgataaaacaca	6	8	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28736254	A	A	28736254	1	1	79	0	1	0	0	0	0	0	0	0	4805	725	25	3		3	DSC1	18	28736254	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3142538	28736254	49340994	384	85093											
MRO	83876	broad.mit.edu	37	chr18	48328079	48328079	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgggtgggggtggcttgaaGagggcccaaaggcttcaatg	19	6	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48328079	T	T	48328079	1	4	79	0	1	0	0	0	0	0	0	0	9866	957	33	3		3	MRO	18	48328079	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	19591825	48328079	29749169	385	85094											
RAB27B	5874	broad.mit.edu	37	chr18	52556570	52556570	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggagaagacacaaatcCctgatactgtcaatggtgga	12	7	1	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52556570	T	T	52556570	3	4	79	1	0	0	0	0	1	0	0	0	13023	623	22	4	601	4	RAB27B	18	52556570	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	4228491	52556570	25520678	386	85095											
ZNF532	55205	broad.mit.edu	37	chr18	56620951	56620951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaaagtggccagtcctGggtggacgtgttgggagtgt	17	7	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56620951	T	T	56620951	3	4	79	1	0	0	0	0	1	0	0	0	18099	1348	47	2	3088	2	ZNF532	18	56620951	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4064381	56620951	21456297	387	85096											
SERPINB5	5268	broad.mit.edu	37	chr18	61170631	61170631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccatggccaatgccaaGgtcaaactctccattccaaa	6	14	2	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61170631	T	T	61170631	3	4	79	1	0	0	0	0	1	0	0	0	14217	991	35	2	826	2	SERPINB5	18	61170631	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	4549680	61170631	16906617	388	85097											
SERPINB4	6318	broad.mit.edu	37	chr18	61324185	61324185	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaaaatgaaaagatgtGtattgcctcatcatctgtat	9	6	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61324185	T	T	61324185	4	4	79	1	0	0	0	0	0	1	0	0	14216	1372	48	3		3	SERPINB4	18	61324185	Nonsense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	153554	61324185	16753063	389	85098											
SERPINB2	5055	broad.mit.edu	37	chr18	61569627	61569627	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttccatattttaccttttAataatattaggctcagcgca	4	9	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61569627	C	C	61569627	1	2	79	0	1	0	0	0	0	0	0	0	14214	377	13	5		5	SERPINB2	18	61569627	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	245442	61569627	16507621	390	85099											
TSHZ1	10194	broad.mit.edu	37	chr18	73000614	73000614	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagcgtccaggtatgcaagaGaccgcggaacattgcactaa	11	10	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73000614	T	T	73000614	1	4	79	0	1	0	0	0	0	0	0	0	16748	957	33	3		3	TSHZ1	18	73000614	3'UTR	SNP	G	TCGA-17-Z050-01A-01W-0747-08	11430987	73000614	5076634	391	85100											
THEG	51298	broad.mit.edu	37	chr19	367181	367181	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgacaactggaggatccgcGagctggggactgccatttgg	15	9	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	367181	C	C	367181	3	2	79	1	0	0	0	0	1	0	0	0	15980	1059	37	4	350	4	THEG	19	367181	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08		367181	58761802	392	85101											
TLE2	7089	broad.mit.edu	37	chr19	3028869	3028869	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggggccccctccccgcagtCcgcactcaccgggtgccttc	12	20	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3028869	A	A	3028869	1	1	79	0	1	0	0	0	0	0	0	0	16062	870	30	3		3	TLE2	19	3028869	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2661688	3028869	56100114	393	85102											
CELF5	60680	broad.mit.edu	37	chr19	3293126	3293126	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtgccccatcctcagaggTatacaagtccagaggtgtca	11	11	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3293126	A	A	3293126	1	1	79	0	1	0	0	0	0	0	0	0	3249	1653	57	5		5	CELF5	19	3293126	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	264257	3293126	55835857	394	85103											
SLC25A23	79085	broad.mit.edu	37	chr19	6441955	6441955	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggctgaggtgtggggggTgagggattggggggacgggc	26	3	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6441955	G	G	6441955	1	3	79	0	1	0	0	0	0	0	0	0	14600	1711	59	5		5	SLC25A23	19	6441955	3'UTR	SNP	T	TCGA-17-Z050-01A-01W-0747-08	3148829	6441955	52687028	395	85104											
OR2Z1	284383	broad.mit.edu	37	chr19	8841802	8841802	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtatcctgtacttatgagaCgccaggtatgtctgctgatg	11	8	1	2	rs58741481	byFrequency;by1000genomes	TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8841802	T	T	8841802	3	4	79	1	0	0	0	0	1	0	0	0	11130	536	19	4	414	4	OR2Z1	19	8841802	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2399847	8841802	50287181	396	85105											
MUC16	94025	broad.mit.edu	37	chr19	9087721	9087721	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagattttaggacttccaGagtaagcagctggggtggcg	15	6	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9087721	T	T	9087721	3	4	79	1	0	0	0	0	1	0	0	0	10067	942	33	3	39765	3	MUC16	19	9087721	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	245919	9087721	50041262	397	85106											
LDLR	3949	broad.mit.edu	37	chr19	11227547	11227547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctagatctcctcagtgGccgcctctactgggttgact	11	12	4	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11227547	T	T	11227547	3	4	79	1	0	0	0	0	1	0	0	0	8776	1203	42	3	1764	3	LDLR	19	11227547	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	2139826	11227547	47901436	398	85107											
LPHN1	22859	broad.mit.edu	37	chr19	14273658	14273658	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgcaggacgtacaggaCcccacacaccatgaaggcgt	12	13	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14273658	T	T	14273658	3	4	79	1	0	0	0	0	1	0	0	0	9002	507	18	4	3530	4	LPHN1	19	14273658	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3046111	14273658	44855325	399	85108											
EPS15L1	58513	broad.mit.edu	37	chr19	16472709	16472709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttttactttggaacgggtCgccgctgtcagccccgagtg	12	12	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16472709	A	A	16472709	3	1	79	1	0	0	0	0	1	0	0	0	5235	884	31	3	131	3	EPS15L1	19	16472709	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	2199051	16472709	42656274	400	85109											
GMIP	51291	broad.mit.edu	37	chr19	19747510	19747510	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggtcaggaccaggtcctatCcctacctgggctggaagtgg	15	11	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19747510	G	G	19747510	1	3	79	0	1	0	0	0	0	0	0	0	6555	870	30	4		4	GMIP	19	19747510	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3274801	19747510	39381473	401	85110											
ZNF714	148206	broad.mit.edu	37	chr19	21281751	21281751	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacaacagatgacacagatGagaggtacaaaggtaaaaaa	9	6	0	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21281751	T	T	21281751	1	4	79	0	1	0	0	0	0	0	0	0	18246	1305	45	3		3	ZNF714	19	21281751	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1534241	21281751	37847232	402	85111											
ZFP14	57677	broad.mit.edu	37	chr19	36831147	36831147	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaattccattatgaatcttCtgatgctgagtaaggtgtga	9	5	2	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36831147	G	G	36831147	3	3	79	1	0	0	0	0	1	0	0	0	17765	912	32	4	24	4	ZFP14	19	36831147	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	15549396	36831147	22297836	403	85112											
ZNF540	163255	broad.mit.edu	37	chr19	38102901	38102901	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagatttcatactggtgaGaaaccctatgaatgtcaaga	9	7	2	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38102901	C	C	38102901	3	2	79	1	0	0	0	0	1	0	0	0	18102	933	33	4	734	4	ZNF540	19	38102901	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1271754	38102901	21026082	404	85113											
RYR1	6261	broad.mit.edu	37	chr19	38958369	38958369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcaccacaggcgagatgCgcgtgggctgggcgaggccc	17	13	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38958369	A	A	38958369	3	1	79	1	0	0	0	0	1	0	0	0	13879	768	27	3	3396	3	RYR1	19	38958369	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	855468	38958369	20170614	405	85114											
SELV	348303	broad.mit.edu	37	chr19	40009752	40009752	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtccaggctgcagaaaatTgtgagcgttatcgatgagga	14	6	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40009752	A	A	40009752	2	1	79	1	0	0	0	0	0	0	0	1	14136	1800	63	5		5	SELV	19	40009752	Silent	SNP	T	TCGA-17-Z050-01A-01W-0747-08	1051383	40009752	19119231	406	85115											
PSG7	5676	broad.mit.edu	37	chr19	43430703	43430703	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggtagaatgaggatcctgTtttcaatgcgtcgctttacc	11	8	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43430703	A	A	43430703	3	1	79	1	0	0	0	0	1	0	0	0	12766	1725	60	5	396	5	PSG7	19	43430703	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	3420951	43430703	15698280	407	85116											
CGB2	114336	broad.mit.edu	37	chr19	49535453	49535453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccacctgcttccaggcCatcactggcatgagaagggg	11	14	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49535453	A	A	49535453	1	1	79	0	1	0	0	0	0	0	0	0	3328	609	21	2		2	CGB2	19	49535453	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	6104750	49535453	9593530	408	85117											
VRK3	51231	broad.mit.edu	37	chr19	50512282	50512282	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgtgcagggaggggccGgggcagctctaggtgctgaa	19	8	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50512282	A	A	50512282	1	1	79	0	1	0	0	0	0	0	0	0	17348	1131	39	4		4	VRK3	19	50512282	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	976829	50512282	8616701	409	85118											
KLK11	11012	broad.mit.edu	37	chr19	51527394	51527394	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaggggtcgcacagcccAggtgatggagactggcgatg	19	8	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51527394	G	G	51527394	3	3	79	1	0	0	0	0	1	0	0	0	8470	188	7	5	394	5	KLK11	19	51527394	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	1015112	51527394	7601589	410	85119											
ZNF616	90317	broad.mit.edu	37	chr19	52620309	52620309	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgaacatgagttttttttTaaactactactattgataaa	4	4	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52620309	A	A	52620309	1	1	79	0	1	0	0	0	0	0	0	0	18168	1769	61	5		5	ZNF616	19	52620309	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	1092915	52620309	6508674	411	85120											
VN1R2	317701	broad.mit.edu	37	chr19	53761893	53761893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacccaccaaacctgtgGggctggaccctacactattc	8	14	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53761893	T	T	53761893	3	4	79	1	0	0	0	0	1	0	0	0	17306	1232	43	2	267	2	VN1R2	19	53761893	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1141584	53761893	5367090	412	85121											
CACNG8	59283	broad.mit.edu	37	chr19	54466477	54466477	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgctgacgacggtgggCgccttcgccgccttcggcct	15	15	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54466477	G	G	54466477	2	3	79	1	0	0	0	0	0	0	0	1	2589	755	27	4		4	CACNG8	19	54466477	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	704584	54466477	4662506	413	85122											
ZSCAN4	201516	broad.mit.edu	37	chr19	58190008	58190008	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgtttgtcccgagtgtcAaaaaggcttcttccagatat	8	8	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58190008	G	G	58190008	3	3	79	1	0	0	0	0	1	0	0	0	18366	130	5	5	1047	5	ZSCAN4	19	58190008	Missense_Mutation	SNP	A	TCGA-17-Z050-01A-01W-0747-08	3723531	58190008	938975	414	85123											
IDH3B	3420	broad.mit.edu	37	chr20	2639447	2639447	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagacttgatgaagtcggTtgtggtgctgtagccgccca	14	9	0	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2639447	C	C	2639447	3	2	79	1	0	0	0	0	1	0	0	0	7567	1725	60	5	138	5	IDH3B	20	2639447	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08		2639447	60386073	415	85124											
PTPRA	5786	broad.mit.edu	37	chr20	2968709	2968709	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagcaagctgggagccatTccaattctttccgcttatcc	7	13	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2968709	A	A	2968709	1	1	79	0	1	0	0	0	0	0	0	0	12903	1783	62	5		5	PTPRA	20	2968709	3'UTR	SNP	T	TCGA-17-Z050-01A-01W-0747-08	329262	2968709	60056811	416	85125											
PTPRA	5786	broad.mit.edu	37	chr20	2968983	2968983	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctcccttgtgtactgcaGagccccagagtgtgccactt	9	14	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2968983	A	A	2968983	5	1	79	1	0	0	0	0	0	0	1	0	12903	956	33	4	623	4	PTPRA	20	2968983	Splice_Site	SNP	G	TCGA-17-Z050-01A-01W-0747-08	274	2968983	60056537	417	85126											
SLC4A11	83959	broad.mit.edu	37	chr20	3214930	3214930	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtcgcggtgcgcacggaTctcttccttgaagttcttta	11	10	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3214930	C	C	3214930	3	2	79	1	0	0	0	0	1	0	0	0	14766	1435	50	5	2369	5	SLC4A11	20	3214930	Missense_Mutation	SNP	T	TCGA-17-Z050-01A-01W-0747-08	245947	3214930	59810590	418	85127											
PAK7	57144	broad.mit.edu	37	chr20	9524885	9524885	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctactctgtgcctcatcTagtgagtggggatcaaatgt	10	8	5	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9524885	C	C	9524885	1	2	79	0	1	0	0	0	0	0	0	0	11499	1537	53	5		5	PAK7	20	9524885	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	6309955	9524885	53500635	419	85128											
PAK7	57144	broad.mit.edu	37	chr20	9560731	9560731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcgtataaaaaggtcgtGccagcaccacccctgtggag	10	12	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9560731	A	A	9560731	1	1	79	0	1	0	0	0	0	0	0	0	11499	1334	46	4		4	PAK7	20	9560731	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	35846	9560731	53464789	420	85129											
JAG1	182	broad.mit.edu	37	chr20	10622588	10622588	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttttctgtgaaccggatCggggttcaattctttggtcc	10	8	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10622588	T	T	10622588	1	4	79	0	1	0	0	0	0	0	0	0	8004	899	31	4		4	JAG1	20	10622588	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1061857	10622588	52402932	421	85130											
SPTLC3	55304	broad.mit.edu	37	chr20	13140862	13140862	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgagacagcttggggtTctctgggtttctcttgggtt	14	6	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13140862	G	G	13140862	1	3	79	0	1	0	0	0	0	0	0	0	15243	1798	62	5		5	SPTLC3	20	13140862	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	2518274	13140862	49884658	422	85131											
XRN2	22803	broad.mit.edu	37	chr20	21321220	21321220	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagacaaccttgtaatattaAcgaagatcatttggtttttt	6	5	1	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21321220	G	G	21321220	1	3	79	0	1	0	0	0	0	0	0	0	17587	58	2	5		5	XRN2	20	21321220	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	8180358	21321220	41704300	423	85132											
PPP1R16B	26051	broad.mit.edu	37	chr20	37518398	37518398	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actttcctgctcagaaccctCagggaggagggaatgaggga	14	9	2	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37518398	G	G	37518398	1	3	79	0	1	0	0	0	0	0	0	0	12467	841	29	4		4	PPP1R16B	20	37518398	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	16197178	37518398	25507122	424	85133											
TOX2	84969	broad.mit.edu	37	chr20	42697233	42697233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgcaggggtcctggtgCtcccctggcccggagaggta	16	12	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42697233	A	A	42697233	1	1	79	0	1	0	0	0	0	0	0	0	16502	812	28	3		3	TOX2	20	42697233	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5178835	42697233	20328287	425	85134											
PREX1	57580	broad.mit.edu	37	chr20	47296038	47296038	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagagatggcttccaggaCggggcagggcagggtaatgg	21	6	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47296038	T	T	47296038	1	4	79	0	1	0	0	0	0	0	0	0	12582	551	19	4		4	PREX1	20	47296038	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	4598805	47296038	15729482	426	85135											
PREX1	57580	broad.mit.edu	37	chr20	47342792	47342792	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttatgctgaagccaaagAgttttctgtcacttcaaata	7	7	3	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47342792	T	T	47342792	1	4	79	0	1	0	0	0	0	0	0	0	12582	319	11	5		5	PREX1	20	47342792	Intron	SNP	A	TCGA-17-Z050-01A-01W-0747-08	46754	47342792	15682728	427	85136											
KCNQ2	3785	broad.mit.edu	37	chr20	62044963	62044963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgggtggggctgtgagcCctgggccagagacccccggc	20	12	0	2			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62044963	T	T	62044963	1	4	79	0	1	0	0	0	0	0	0	0	8153	638	22	4		4	KCNQ2	20	62044963	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	14702171	62044963	980557	428	85137											
ZBTB46	140685	broad.mit.edu	37	chr20	62407080	62407080	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactcgaacagcagggagccGtcatcccccagcacgtcggc	11	16	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62407080	A	A	62407080	2	1	79	1	0	0	0	0	0	0	0	1	17673	1136	40	4		4	ZBTB46	20	62407080	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	362117	62407080	618440	429	85138											
BACE2	25825	broad.mit.edu	37	chr21	42618023	42618023	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacactcacgggtccccgagTtgctgagttacagtcacctg	11	13	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42618023	G	G	42618023	1	3	79	0	1	0	0	0	0	0	0	0	1287	1740	60	5		5	BACE2	21	42618023	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08		42618023	5511872	430	85139											
KRTAP10-8	386681	broad.mit.edu	37	chr21	46032170	46032170	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattgccaggaaagctgctgCgagccccgctcctgtgcctc	11	15	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46032170	T	T	46032170	2	4	79	1	0	0	0	0	0	0	0	1	8586	776	27	4		4	KRTAP10-8	21	46032170	Silent	SNP	C	TCGA-17-Z050-01A-01W-0747-08	3414147	46032170	2097725	431	85140											
POTEH	23784	broad.mit.edu	37	chr22	16266963	16266963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcagtgtcaggaaattGctggctttcaggtgttctgc	11	8	4	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16266963	T	T	16266963	3	4	79	1	0	0	0	0	1	0	0	0	12363	1328	46	3	159	3	POTEH	22	16266963	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08		16266963	35037603	432	85141											
CECR2	27443	broad.mit.edu	37	chr22	17897741	17897741	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctctagtgcccggcgtcaGacatggcggaggcgatggat	15	11	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17897741	A	A	17897741	1	1	79	0	1	0	0	0	0	0	0	0	3236	957	33	4		4	CECR2	22	17897741	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1630778	17897741	33406825	433	85142											
CDC45	8318	broad.mit.edu	37	chr22	19481818	19481818	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaattcctggtgcatttgcTccaccttttgttctctttgt	6	10	1	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19481818	A	A	19481818	1	1	79	0	1	0	0	0	0	0	0	0	3111	1566	54	5		5	CDC45	22	19481818	Intron	SNP	T	TCGA-17-Z050-01A-01W-0747-08	1584077	19481818	31822748	434	85143											
LZTR1	8216	broad.mit.edu	37	chr22	21349176	21349176	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggagcactgcctgaacttCgtggtaaaggagtcccactt	11	11	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21349176	G	G	21349176	3	3	79	1	0	0	0	0	1	0	0	0	9225	883	31	4	1865	4	LZTR1	22	21349176	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	1867358	21349176	29955390	435	85144											
PPIL2	23759	broad.mit.edu	37	chr22	22037369	22037369	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacctcagtgtagccctgGcctcttccacacctctgaca	6	18	3	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22037369	T	T	22037369	1	4	79	0	1	0	0	0	0	0	0	0	12428	1218	42	3		3	PPIL2	22	22037369	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	688193	22037369	29267197	436	85145											
OSBP2	23762	broad.mit.edu	37	chr22	31302178	31302178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagcccactgtgcctgccCagcagagaaggaggcggatg	14	13	0	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31302178	A	A	31302178	1	1	79	0	1	0	0	0	0	0	0	0	11368	609	21	2		2	OSBP2	22	31302178	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	9264809	31302178	20002388	437	85146											
EFCAB6	64800	broad.mit.edu	37	chr22	43996245	43996245	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accatccatgaggagctcgtCttccatccctcaccactcgg	7	17	2	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43996245	A	A	43996245	1	1	79	0	1	0	0	0	0	0	0	0	4979	928	32	3		3	EFCAB6	22	43996245	Intron	SNP	C	TCGA-17-Z050-01A-01W-0747-08	12694067	43996245	7308321	438	85147											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45258349	45258349	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacctggggagcacggcctGgcaccatgggaacaggggag	18	11	0	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45258349	A	A	45258349	2	1	79	1	0	0	0	0	0	0	0	1	12707	1335	47	4		4	PRR5-ARHGAP8	22	45258349	Silent	SNP	G	TCGA-17-Z050-01A-01W-0747-08	1262104	45258349	6046217	439	85148											
OTC	5009	broad.mit.edu	37	chrX	38211915	38211915	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgctgtggagttttcaaGggcatagaatcgtcctttac	10	8	1	1			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38211915	T	T	38211915	1	4	79	1	0	0	0	0	0	0	0	0	11395	1015	35	2		2	OTC	23	38211915	Translation_Start_Site	SNP	G	TCGA-17-Z050-01A-01W-0747-08		38211915	117058645	440	85149											
DGKK	139189	broad.mit.edu	37	chrX	50146951	50146951	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacctcacaccagagtcagtGacctagtatgagttaatgat	8	9	2	4			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50146951	C	C	50146951	1	2	79	0	1	0	0	0	0	0	0	0	4512	1305	45	4		4	DGKK	23	50146951	Intron	SNP	G	TCGA-17-Z050-01A-01W-0747-08	11935036	50146951	105123609	441	85150											
USP51	158880	broad.mit.edu	37	chrX	55513782	55513782	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactgtgctgtcagccctctCtgggttctgggaatcgaatg	12	11	3	0			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55513782	G	G	55513782	3	3	79	1	0	0	0	0	1	0	0	0	17210	922	32	4	548	4	USP51	23	55513782	Missense_Mutation	SNP	C	TCGA-17-Z050-01A-01W-0747-08	5366831	55513782	99756778	442	85151											
ZNF449	203523	broad.mit.edu	37	chrX	134494331	134494331	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagcagaaccccactctggGagagacacctgagaactcca	9	14	2	3			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134494331	C	C	134494331	3	2	79	1	0	0	0	0	1	0	0	0	18047	1174	41	4	901	4	ZNF449	23	134494331	Missense_Mutation	SNP	G	TCGA-17-Z050-01A-01W-0747-08	78980549	134494331	20776229	443	85152											
CDK11B	984	broad.mit.edu	37	chr1	1588717	1588717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctcacctgcgacatttGgaagtacaaaagaacttcac	9	10	2	1	rs61774959	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1588717	A	A	1588717	1	1	80	0	1	0	0	0	0	0	0	0	3157	1363	47	4		4	CDK11B	1	1588717	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		1588717	247661904	1	85153											
RPS6KA1	6195	broad.mit.edu	37	chr1	26898443	26898443	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccctggcctggacccttcCccactcctgcagccctagca	8	21	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26898443	G	G	26898443	1	3	80	0	1	0	0	0	0	0	0	0	13761	638	22	4		4	RPS6KA1	1	26898443	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	25309726	26898443	222352178	2	85154											
WDTC1	23038	broad.mit.edu	37	chr1	27614072	27614072	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcattctcttatctgacatgGagagagaaaagggtgcagac	11	7	3	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27614072	T	T	27614072	1	4	80	0	1	0	0	0	0	0	0	0	17469	1189	41	3		3	WDTC1	1	27614072	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	715629	27614072	221636549	3	85155											
EYA3	2140	broad.mit.edu	37	chr1	28319944	28319944	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatgcttatcatagatttCtctcactttccggtagcgga	7	9	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28319944	T	T	28319944	3	4	80	1	0	0	0	0	1	0	0	0	5373	922	32	4	471	4	EYA3	1	28319944	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	705872	28319944	220930677	4	85156											
GJA9	81025	broad.mit.edu	37	chr1	39340384	39340384	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttggaatgtcaagtgattGagaatctccttgtgaaggag	13	4	2	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39340384	C	C	39340384	3	2	80	1	0	0	0	0	1	0	0	0	6470	1299	45	4	164	4	GJA9	1	39340384	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	11020440	39340384	209910237	5	85157											
GJA9	81025	broad.mit.edu	37	chr1	39341674	39341674	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacacccagaacaagcattcGaaatatgaacaggatggtga	9	8	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39341674	A	A	39341674	4	1	80	1	0	0	0	0	0	1	0	0	6470	1066	37	4	1454	4	GJA9	1	39341674	Nonsense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1290	39341674	209908947	6	85158											
PPIE	10450	broad.mit.edu	37	chr1	40207434	40207434	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaggaagtgctctttgttaGaaacacacaaaacctaggca	8	10	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40207434	A	A	40207434	1	1	80	0	1	0	0	0	0	0	0	0	12423	957	33	4		4	PPIE	1	40207434	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	865760	40207434	209043187	7	85159											
PPIE	10450	broad.mit.edu	37	chr1	40207573	40207573	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttccttggcaggatgctGcagcagctatcgacaacatg	10	11	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40207573	A	A	40207573	3	1	80	1	0	0	0	0	1	0	0	0	12423	1319	46	4	195	4	PPIE	1	40207573	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	139	40207573	209043048	8	85160											
PTPRF	5792	broad.mit.edu	37	chr1	44069399	44069399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccggctgcagtactgccGggccgacgaggcgcggccca	15	16	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44069399	T	T	44069399	3	4	80	1	0	0	0	0	1	0	0	0	12909	1116	39	1	2630	1	PTPRF	1	44069399	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3861826	44069399	205181222	9	85161											
SSBP3	23648	broad.mit.edu	37	chr1	54694095	54694095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccacacagatggggcgcCgccagggagaccgagtgcac	15	14	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54694095	A	A	54694095	1	1	80	0	1	0	0	0	0	0	0	0	15299	667	23	1		1	SSBP3	1	54694095	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	10624696	54694095	194556526	10	85162											
PRKAA2	5563	broad.mit.edu	37	chr1	57170209	57170209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttctatattataagctgCtctgagctcctgagttgagt	8	7	2	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57170209	A	A	57170209	1	1	80	0	1	0	0	0	0	0	0	0	12600	812	28	3		3	PRKAA2	1	57170209	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2476114	57170209	192080412	11	85163											
EFCAB7	84455	broad.mit.edu	37	chr1	63999765	63999765	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataatcattacttgttgcaGgtgacaccaggagttcttta	8	7	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63999765	C	C	63999765	5	2	80	1	0	0	0	0	0	0	1	0	4980	1014	35	4	700	4	EFCAB7	1	63999765	Splice_Site	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6829556	63999765	185250856	12	85164											
C1orf173	127254	broad.mit.edu	37	chr1	75107166	75107166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaataagaaagcaatttagCaaatagatgcatagttagta	8	3	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75107166	A	A	75107166	1	1	80	0	1	0	0	0	0	0	0	0	2034	725	25	3		3	C1orf173	1	75107166	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	11107401	75107166	174143455	13	85165											
HS2ST1	9653	broad.mit.edu	37	chr1	87511802	87511802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttgacagtttatattgGttatgaatgctttagataac	7	3	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87511802	T	T	87511802	1	4	80	0	1	0	0	0	0	0	0	0	7429	1276	44	3		3	HS2ST1	1	87511802	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	12404636	87511802	161738819	14	85166											
ZNF644	84146	broad.mit.edu	37	chr1	91402869	91402869	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgctaatgagcatcaaTtgatgagttatacagaaatg	9	5	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91402869	C	C	91402869	1	2	80	0	1	0	0	0	0	0	0	0	18187	1508	52	5		5	ZNF644	1	91402869	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	3891067	91402869	157847752	15	85167											
SPAG17	200162	broad.mit.edu	37	chr1	118579413	118579413	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctggtgccattccatttgatCcatagtaacttatcgagagg	9	9	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118579413	G	G	118579413	3	3	80	1	0	0	0	0	1	0	0	0	15095	855	30	4	3358	4	SPAG17	1	118579413	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	27176544	118579413	130671208	16	85168											
WARS2	10352	broad.mit.edu	37	chr1	119575446	119575446	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaattaaatgtcccaaaacTataactttttctttttagga	3	7	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119575446	C	C	119575446	1	2	80	0	1	0	0	0	0	0	0	0	17377	1537	53	5		5	WARS2	1	119575446	3'UTR	SNP	T	TCGA-17-Z051-01A-01W-0747-08	996033	119575446	129675175	17	85169											
NOTCH2	4853	broad.mit.edu	37	chr1	120611908	120611908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcgccccaggtggcagcCccgggcgccgcggacagcgc	18	17	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120611908	A	A	120611908	1	1	80	0	1	0	0	0	0	0	0	0	10643	638	22	2		2	NOTCH2	1	120611908	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1036462	120611908	128638713	18	85170											
NBPF9	400818	broad.mit.edu	37	chr1	144824381	144824381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgagacagggctgaataGtgcagtttttctcctagcaa	11	7	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144824381	T	T	144824381	1	4	80	0	1	0	0	0	0	0	0	0	10294	1044	36	3		3	NBPF9	1	144824381	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	24212473	144824381	104426240	19	85171											
NBPF9	400818	broad.mit.edu	37	chr1	144824396	144824396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatagtgcagtttttctccTagcaaccatttggggacatt	9	8	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144824396	C	C	144824396	1	2	80	0	1	0	0	0	0	0	0	0	10294	1537	53	5		5	NBPF9	1	144824396	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	15	144824396	104426225	20	85172											
VPS45	11311	broad.mit.edu	37	chr1	150082472	150082472	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agataattgaaactttttttAaaccttttattctattctgc	3	6	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150082472	T	T	150082472	1	4	80	0	1	0	0	0	0	0	0	0	17338	377	13	5		5	VPS45	1	150082472	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	5258076	150082472	99168149	21	85173											
RORC	6097	broad.mit.edu	37	chr1	151789563	151789563	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagaacaaaggccattaacCcccttgtttatctctaagga	6	11	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151789563	G	G	151789563	1	3	80	0	1	0	0	0	0	0	0	0	13641	638	22	4		4	RORC	1	151789563	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1707091	151789563	97461058	22	85174											
THEM5	284486	broad.mit.edu	37	chr1	151820329	151820329	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacaaccagagagtccacGgggatcaagctgggagacga	13	9	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151820329	T	T	151820329	2	4	80	1	0	0	0	0	0	0	0	1	15982	1103	39	1		1	THEM5	1	151820329	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	30766	151820329	97430292	23	85175											
FLG	2312	broad.mit.edu	37	chr1	152286011	152286011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccacgtgtggactcttGgtggctctgctgtctcagcc	13	14	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152286011	T	T	152286011	3	4	80	1	0	0	0	0	1	0	0	0	5979	1357	47	2	10838	2	FLG	1	152286011	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	465682	152286011	96964610	24	85176											
S100A13	6284	broad.mit.edu	37	chr1	153591323	153591323	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaagagtgcggttctgctCggccctgatcagctctgccc	14	13	3	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153591323	A	A	153591323	1	1	80	0	1	0	0	0	0	0	0	0	13886	899	31	3		3	S100A13	1	153591323	3'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1305312	153591323	95659298	25	85177											
GBA	2629	broad.mit.edu	37	chr1	155208062	155208062	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggagtgaaacgggacgCtgggccaactgcagggctcg	17	10	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155208062	T	T	155208062	2	4	80	1	0	0	0	0	0	0	0	1	6328	796	28	4		4	GBA	1	155208062	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1616739	155208062	94042559	26	85178											
GON4L	54856	broad.mit.edu	37	chr1	155753967	155753967	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggaagagtgaaaactataGattacaagactataataatg	8	3	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155753967	A	A	155753967	1	1	80	0	1	0	0	0	0	0	0	0	6636	957	33	4		4	GON4L	1	155753967	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	545905	155753967	93496654	27	85179											
CD5L	922	broad.mit.edu	37	chr1	157804581	157804581	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgttctctgccagaacAtggtcttctcagtaaaggcg	10	10	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157804581	G	G	157804581	1	3	80	0	1	0	0	0	0	0	0	0	3057	232	8	5		5	CD5L	1	157804581	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	2050614	157804581	91446040	28	85180											
OR10J3	441911	broad.mit.edu	37	chr1	159283909	159283909	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcagcaggtgtctcacatCacagaagaagtgggagatga	12	8	3	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159283909	A	A	159283909	3	1	80	1	0	0	0	0	1	0	0	0	11005	826	29	3	450	3	OR10J3	1	159283909	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1479328	159283909	89966712	29	85181											
SLAMF9	89886	broad.mit.edu	37	chr1	159923714	159923714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctctttcttccatatcccCaggtgtctctcggtcctgcc	7	16	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159923714	T	T	159923714	1	4	80	0	1	0	0	0	0	0	0	0	14484	609	21	4		4	SLAMF9	1	159923714	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	639805	159923714	89326907	30	85182											
FCGR2A	2212	broad.mit.edu	37	chr1	161479887	161479887	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggggagtctgccaagatgTagggaggggagaagagggga	21	3	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161479887	A	A	161479887	1	1	80	0	1	0	0	0	0	0	0	0	5838	1653	57	5		5	FCGR2A	1	161479887	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1556173	161479887	87770734	31	85183											
DUSP27	92235	broad.mit.edu	37	chr1	167086710	167086710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacgccctgtgtcctggaCctacagcgggccctggttca	11	14	1	0	rs146625016	byFrequency	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167086710	A	A	167086710	3	1	80	1	0	0	0	0	1	0	0	0	4864	506	18	3	361	3	DUSP27	1	167086710	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	5606823	167086710	82163911	32	85184											
BAT2L2	23215	broad.mit.edu	37	chr1	171501462	171501462	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagagttgtcataactcatCtgataccttaatgtttcagc	6	8	4	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171501462	G	G	171501462	1	3	80	0	1	0	0	0	0	0	0	0	1326	928	32	4		4	BAT2L2	1	171501462	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	4414752	171501462	77749159	33	85185											
KLHL20	27252	broad.mit.edu	37	chr1	173703539	173703539	+	Intron	DEL	A	-	-													tgattctaactcataatagcAaataaataagttattataaa							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	173703539	-	-	173703539	6	5	80	0	1	1	0	1	0	0	0	0	8446	145	5	0		0	KLHL20	1	173703539	Intron	DEL	A	TCGA-17-Z051-01A-01W-0747-08	2202077	173703539	75547082	34	85186											
ASTN1	460	broad.mit.edu	37	chr1	176983744	176983744	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctcgtaaatggagaaaaaGatgatatagacgtcactgga	12	5	1	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176983744	C	C	176983744	1	2	80	0	1	0	0	0	0	0	0	0	1068	957	33	4		4	ASTN1	1	176983744	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3280205	176983744	72266877	35	85187											
HMCN1	83872	broad.mit.edu	37	chr1	186022872	186022872	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccttttatatacttgaacTgaataaacaaatgtcatact	4	7	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186022872	A	A	186022872	1	1	80	0	1	0	0	0	0	0	0	0	7287	1595	55	5		5	HMCN1	1	186022872	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	9039128	186022872	63227749	36	85188											
FAM5C	339479	broad.mit.edu	37	chr1	190234280	190234280	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctagcttatgaatatagTaaaacaaaggagtgatatat	9	3	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190234280	A	A	190234280	1	1	80	0	1	0	0	0	0	0	0	0	5645	1653	57	5		5	FAM5C	1	190234280	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	4211408	190234280	59016341	37	85189											
DENND1B	163486	broad.mit.edu	37	chr1	197704956	197704956	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagcacaaaaagggacaatTggaagaaattcaaaagaaaa	9	4	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197704956	A	A	197704956	1	1	80	0	1	0	0	0	0	0	0	0	4467	1827	63	5		5	DENND1B	1	197704956	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	7470676	197704956	51545665	38	85190											
ARL8A	127829	broad.mit.edu	37	chr1	202103614	202103614	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcagcttctccgtgacttcGagtgttgaataagccactgt	9	11	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202103614	A	A	202103614	3	1	80	1	0	0	0	0	1	0	0	0	950	1059	37	4	22	4	ARL8A	1	202103614	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4398658	202103614	47147007	39	85191											
OPTC	26254	broad.mit.edu	37	chr1	203467770	203467770	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccattggccccagaggctAaagagatctccctttgttct	10	12	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203467770	G	G	203467770	1	3	80	0	1	0	0	0	0	0	0	0	10982	377	13	5		5	OPTC	1	203467770	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	1364156	203467770	45782851	40	85192											
ZC3H11A	9877	broad.mit.edu	37	chr1	203798755	203798755	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccaccagttgtaattaatGctgcagatgatgatgaagat	9	6	0	5			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203798755	C	C	203798755	3	2	80	1	0	0	0	0	1	0	0	0	17686	1319	46	4	489	4	ZC3H11A	1	203798755	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	330985	203798755	45451866	41	85193											
CTSE	1510	broad.mit.edu	37	chr1	206320422	206320422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaatgggtggaaacaggGgttagcactaacttctagga	14	6	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206320422	T	T	206320422	1	4	80	0	1	0	0	0	0	0	0	0	4067	1247	43	2		2	CTSE	1	206320422	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2521667	206320422	42930199	42	85194											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209946492	209946492	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacccattcctacttaccCatttctggcttggccattta	4	15	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209946492	G	G	209946492	1	3	80	0	1	0	0	0	0	0	0	0	16566	609	21	4		4	TRAF3IP3	1	209946492	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3626070	209946492	39304129	43	85195											
CENPF	1063	broad.mit.edu	37	chr1	214837204	214837204	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agataaggctgtgcctacagGacttctctttagtcagggca	11	9	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214837204	A	A	214837204	1	1	80	0	1	0	0	0	0	0	0	0	3261	1189	41	4		4	CENPF	1	214837204	3'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4890712	214837204	34413417	44	85196											
PARP1	142	broad.mit.edu	37	chr1	226576294	226576294	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactccttgaattgtcttccCagaatgagaaagagaatcca	7	9	1	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226576294	T	T	226576294	1	4	80	0	1	0	0	0	0	0	0	0	11548	609	21	4		4	PARP1	1	226576294	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	11739090	226576294	22674327	45	85197											
RYR2	6262	broad.mit.edu	37	chr1	237620086	237620086	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagttatctatttaaaatgtCcataaatggactaggtgtga	9	4	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237620086	G	G	237620086	1	3	80	0	1	0	0	0	0	0	0	0	13880	870	30	4		4	RYR2	1	237620086	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	11043792	237620086	11630535	46	85198											
WDR64	128025	broad.mit.edu	37	chr1	241964606	241964606	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggatgagagggagaaaccAccagacactatcagtcatct	10	10	3	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241964606	C	C	241964606	1	2	80	0	1	0	0	0	0	0	0	0	17442	174	6	5		5	WDR64	1	241964606	3'UTR	SNP	A	TCGA-17-Z051-01A-01W-0747-08	4344520	241964606	7286015	47	85199											
OR2L13	284521	broad.mit.edu	37	chr1	248099980	248099980	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagggtgtggcagagctgGtgggccatgtgccagacatg	17	8	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248099980	T	T	248099980	1	4	80	0	1	0	0	0	0	0	0	0	11100	1276	44	3		3	OR2L13	1	248099980	5'Flank	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6135374	248099980	1150641	48	85200											
SMC6	79677	broad.mit.edu	37	chr2	17949974	17949974	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattcctagtgattaacatTggaattattttttttcccac	4	9	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17949974	G	G	17949974	1	3	80	0	1	0	0	0	0	0	0	0	14901	1827	63	5		5	SMC6	2	17949974	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08		17949974	225249399	49	85201											
EMILIN1	11117	broad.mit.edu	37	chr2	27303041	27303041	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggtgtgcctacgtggtgAcccggacagtgagctgtgtc	15	10	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27303041	G	G	27303041	3	3	80	1	0	0	0	0	1	0	0	0	5135	275	10	5	199	5	EMILIN1	2	27303041	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	9353067	27303041	215896332	50	85202											
SLC30A6	55676	broad.mit.edu	37	chr2	32445602	32445602	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaacccagttattcttctAaacacacaaacaaggcctta	5	11	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32445602	C	C	32445602	2	2	80	1	0	0	0	0	0	0	0	1	14673	349	13	5		5	SLC30A6	2	32445602	Silent	SNP	A	TCGA-17-Z051-01A-01W-0747-08	5142561	32445602	210753771	51	85203											
YIPF4	84272	broad.mit.edu	37	chr2	32523203	32523203	+	Intron	DEL	G	-	-													tctctctatgacctgaaattGggcatgctaaactgtcattt							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32523203	-	-	32523203	6	5	80	0	1	1	0	1	0	0	0	0	17607	1363	47	0		0	YIPF4	2	32523203	Intron	DEL	G	TCGA-17-Z051-01A-01W-0747-08	77601	32523203	210676170	52	85204											
ZNF638	27332	broad.mit.edu	37	chr2	71591198	71591198	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccgtcggtctcgaagcccAatgcattacatgtataggcc	9	12	1	0	rs141783047		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71591198	T	T	71591198	2	4	80	1	0	0	0	0	0	0	0	1	18182	117	5	5		5	ZNF638	2	71591198	Silent	SNP	A	TCGA-17-Z051-01A-01W-0747-08	39067995	71591198	171608175	53	85205											
PCGF1	84759	broad.mit.edu	37	chr2	74734045	74734045	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagcagattctcaggccctCtggaaactggattcatgggc	11	10	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74734045	G	G	74734045	1	3	80	0	1	0	0	0	0	0	0	0	11668	928	32	4		4	PCGF1	2	74734045	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3142847	74734045	168465328	54	85206											
DQX1	165545	broad.mit.edu	37	chr2	74751023	74751023	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggctcattttgcaggctgTtttttttgttttgttttgtt	9	5	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74751023	G	G	74751023	1	3	80	0	1	0	0	0	0	0	0	0	4791	1740	60	5		5	DQX1	2	74751023	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	16978	74751023	168448350	55	85207											
POLE4	56655	broad.mit.edu	37	chr2	75187431	75187431	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaacttgctaaacctagtGaggttcagttttctcccttg	8	9	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75187431	C	C	75187431	1	2	80	0	1	0	0	0	0	0	0	0	12294	1305	45	4		4	POLE4	2	75187431	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	436408	75187431	168011942	56	85208											
REG1B	5968	broad.mit.edu	37	chr2	79312722	79312722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccactactccagtgccagCggcggttctagatggagaag	12	12	1	2	rs141167987		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79312722	A	A	79312722	3	1	80	1	0	0	0	0	1	0	0	0	13319	768	27	3	179	3	REG1B	2	79312722	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	4125291	79312722	163886651	57	85209											
REG3A	5068	broad.mit.edu	37	chr2	79385627	79385627	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatgagagggagcctgagAcctgctgagggagggcaggg	20	6	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385627	T	T	79385627	1	4	80	0	1	0	0	0	0	0	0	0	13320	290	10	5		5	REG3A	2	79385627	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	72905	79385627	163813746	58	85210											
SMYD1	150572	broad.mit.edu	37	chr2	88408090	88408090	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgaggctggtgttcccttCctggcctgagctttctgagg	13	11	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88408090	T	T	88408090	1	4	80	0	1	0	0	0	0	0	0	0	14935	870	30	4		4	SMYD1	2	88408090	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	9022463	88408090	154791283	59	85211											
SLC5A7	60482	broad.mit.edu	37	chr2	108608719	108608719	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactcactcagtaaagtatAcagaacaagagtataaataa	6	6	2	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108608719	G	G	108608719	1	3	80	0	1	0	0	0	0	0	0	0	14784	406	14	5		5	SLC5A7	2	108608719	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	20200629	108608719	134590654	60	85212											
DPP10	57628	broad.mit.edu	37	chr2	116573229	116573229	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcacaaagatataactaTtgtttttcgttttcattgca	4	7	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116573229	C	C	116573229	1	2	80	0	1	0	0	0	0	0	0	0	4767	1508	52	5		5	DPP10	2	116573229	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	7964510	116573229	126626144	61	85213											
DPP10	57628	broad.mit.edu	37	chr2	116593992	116593992	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgattttactaaagcatGacaattaaatgtaaaatgaa	6	4	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116593992	C	C	116593992	1	2	80	0	1	0	0	0	0	0	0	0	4767	1305	45	4		4	DPP10	2	116593992	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	20763	116593992	126605381	62	85214											
DDX18	8886	broad.mit.edu	37	chr2	118572496	118572496	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcgcgagccctggcgcgttCgggcggccgggggcccagct	19	16	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118572496	T	T	118572496	1	4	80	0	1	0	0	0	0	0	0	0	4378	899	31	4		4	DDX18	2	118572496	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1978504	118572496	124626877	63	85215											
MAP3K2	10746	broad.mit.edu	37	chr2	128083187	128083187	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggaggactgatggagcCaaggaggtcaaggctgcagt	19	6	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128083187	G	G	128083187	1	3	80	0	1	0	0	0	0	0	0	0	9342	609	21	4		4	MAP3K2	2	128083187	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	9510691	128083187	115116186	64	85216											
RIF1	55183	broad.mit.edu	37	chr2	152318776	152318776	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgatattcctgccatgtAtaataatctggatgtttccc	8	8	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152318776	G	G	152318776	3	3	80	1	0	0	0	0	1	0	0	0	13468	449	16	5	3354	5	RIF1	2	152318776	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	24235589	152318776	90880597	65	85217											
NEB	4703	broad.mit.edu	37	chr2	152426796	152426796	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagccggtactctcgttcAttctggagcttgtcagctat	9	12	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152426796	C	C	152426796	3	2	80	1	0	0	0	0	1	0	0	0	10397	214	8	5	8753	5	NEB	2	152426796	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	108020	152426796	90772577	66	85218											
BAZ2B	29994	broad.mit.edu	37	chr2	160546765	160546765	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctttcttagaaaatagaTcagccactttcgtcttggct	6	9	4	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160546765	C	C	160546765	1	2	80	0	1	0	0	0	0	0	0	0	1337	1450	50	5		5	BAZ2B	2	160546765	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	8119969	160546765	82652608	67	85219											
XIRP2	129446	broad.mit.edu	37	chr2	168098276	168098276	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtaaccctggtgtgttttTctgtttgtagtcattgatac	9	6	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168098276	C	C	168098276	1	2	80	0	1	0	0	0	0	0	0	0	17557	1798	62	5		5	XIRP2	2	168098276	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	7551511	168098276	75101097	68	85220											
PPIG	9360	broad.mit.edu	37	chr2	170470922	170470925	+	Intron	DEL	TTTG	-	-													ttctttttagagatgctaacTttgtttttctctgactttgt							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170470925	-	-	170470922	6	5	80	0	1	1	0	1	0	0	0	0	12425	1624	56	0		0	PPIG	2	170470922	Intron	DEL	TTTG	TCGA-17-Z051-01A-01W-0747-08	2372646	170470922	72728451	69	85221											
GAD1	2571	broad.mit.edu	37	chr2	171687701	171687701	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagtatggggttcgcacAggtaaggaggagagttgggt	18	3	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171687701	T	T	171687701	2	4	80	1	0	0	0	0	0	0	0	1	6239	202	7	5		5	GAD1	2	171687701	Silent	SNP	A	TCGA-17-Z051-01A-01W-0747-08	1216779	171687701	71511672	70	85222											
TTN	7273	broad.mit.edu	37	chr2	179447076	179447076	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agactggatcgcctactccaTatttattttcagcacaaata	5	10	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179447076	G	G	179447076	3	3	80	1	0	0	0	0	1	0	0	0	16861	1406	49	5	42068	5	TTN	2	179447076	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	7759375	179447076	63752297	71	85223											
HIBCH	26275	broad.mit.edu	37	chr2	191175535	191175535	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaaacctgaaacaaatgTggaaaacaatgagaacagta	7	6	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191175535	C	C	191175535	1	2	80	0	1	0	0	0	0	0	0	0	7167	1711	59	5		5	HIBCH	2	191175535	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	11728459	191175535	52023838	72	85224											
CCDC150	284992	broad.mit.edu	37	chr2	197594195	197594195	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctagggaagacaggttttaGaaccctagcagccccatgta	10	10	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197594195	A	A	197594195	1	1	80	0	1	0	0	0	0	0	0	0	2811	957	33	4		4	CCDC150	2	197594195	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6418660	197594195	45605178	73	85225											
MOBKL3	25843	broad.mit.edu	37	chr2	198412993	198412993	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggaataaggtatacccatAtaatgaatatatctaactta	5	5	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198412993	G	G	198412993	1	3	80	0	1	0	0	0	0	0	0	0	9781	464	16	5		5	MOBKL3	2	198412993	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	818798	198412993	44786380	74	85226											
BZW1	9689	broad.mit.edu	37	chr2	201683537	201683537	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcccagagccagttgtcatCggaatagtctggtcaagtgt	11	9	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201683537	T	T	201683537	2	4	80	1	0	0	0	0	0	0	0	1	1588	899	31	4		4	BZW1	2	201683537	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3270544	201683537	41515836	75	85227											
CPS1	1373	broad.mit.edu	37	chr2	211480961	211480961	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtatgccatttgtggataTagttggcaccatctttatgt	9	7	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211480961	C	C	211480961	1	2	80	0	1	0	0	0	0	0	0	0	3855	1421	49	5		5	CPS1	2	211480961	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	9797424	211480961	31718412	76	85228											
BARD1	580	broad.mit.edu	37	chr2	215593379	215593379	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accgtgcaaattcaatttgaAatgttcatctggtataatat	6	6	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215593379	T	T	215593379	1	4	80	0	1	0	0	0	0	0	0	0	1317	29	1	5		5	BARD1	2	215593379	3'UTR	SNP	A	TCGA-17-Z051-01A-01W-0747-08	4112418	215593379	27605994	77	85229											
FN1	2335	broad.mit.edu	37	chr2	216285363	216285363	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgctaaccattccccctgTgcaaactcatctagggaaat	6	13	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216285363	C	C	216285363	1	2	80	0	1	0	0	0	0	0	0	0	6020	1711	59	5		5	FN1	2	216285363	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	691984	216285363	26914010	78	85230											
TNP1	7141	broad.mit.edu	37	chr2	217724210	217724210	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagttttattgagatgtTggggaaaaacagccaacata	9	5	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217724210	A	A	217724210	1	1	80	0	1	0	0	0	0	0	0	0	16456	1827	63	5		5	TNP1	2	217724210	3'UTR	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1438847	217724210	25475163	79	85231											
SLC11A1	6556	broad.mit.edu	37	chr2	219255992	219255992	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaacgccaccgtggcCgtggacatttaccagggggt	13	11	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219255992	G	G	219255992	2	3	80	1	0	0	0	0	0	0	0	1	14493	639	23	4		4	SLC11A1	2	219255992	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1531782	219255992	23943381	80	85232											
WNT6	7475	broad.mit.edu	37	chr2	219736487	219736487	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgcgcggcacaagcggggAcgcggagacatccgcgcgtt	17	13	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219736487	T	T	219736487	2	4	80	1	0	0	0	0	0	0	0	1	17520	262	10	5		5	WNT6	2	219736487	Silent	SNP	A	TCGA-17-Z051-01A-01W-0747-08	480495	219736487	23462886	81	85233											
SP100	6672	broad.mit.edu	37	chr2	231307844	231307844	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttattatgtcacaatctgGtaaagcagccccaaaataag	7	8	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231307844	A	A	231307844	1	1	80	0	1	0	0	0	0	0	0	0	15074	1276	44	4		4	SP100	2	231307844	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	11571357	231307844	11891529	82	85234											
USP40	55230	broad.mit.edu	37	chr2	234405289	234405289	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatttggggaaagttctcCcttctctttatgactgtctg	9	9	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234405289	G	G	234405289	1	3	80	0	1	0	0	0	0	0	0	0	17199	638	22	4		4	USP40	2	234405289	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3097445	234405289	8794084	83	85235											
TRPM8	79054	broad.mit.edu	37	chr2	234915401	234915401	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggacgaatctcattcttaGttctagagtctcacaaaatg	7	9	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234915401	C	C	234915401	1	2	80	0	1	0	0	0	0	0	0	0	16717	1044	36	4		4	TRPM8	2	234915401	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	510112	234915401	8283972	84	85236											
CXCR7	57007	broad.mit.edu	37	chr2	237490078	237490078	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaatcgcaactacaggTacgagctgatgaaggccttc	9	11	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237490078	C	C	237490078	3	2	80	1	0	0	0	0	1	0	0	0	4129	1638	57	5	972	5	CXCR7	2	237490078	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	2574677	237490078	5709295	85	85237											
IQSEC1	9922	broad.mit.edu	37	chr3	12957004	12957004	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctggaagagaccacacGgagtggggtgggtgggagtg	20	7	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12957004	A	A	12957004	1	1	80	0	1	0	0	0	0	0	0	0	7887	1131	39	4		4	IQSEC1	3	12957004	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		12957004	185065426	86	85238											
DAZL	1618	broad.mit.edu	37	chr3	16640098	16640098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttggagtttcaggatttGcagtagactgtaatttggaa	12	3	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16640098	T	T	16640098	3	4	80	1	0	0	0	0	1	0	0	0	4279	1319	46	3	916	3	DAZL	3	16640098	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3683094	16640098	181382332	87	85239											
TRIM71	131405	broad.mit.edu	37	chr3	32933252	32933252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcgccatcacccccgaCggaatgatcgttgtggtgga	13	12	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32933252	A	A	32933252	3	1	80	1	0	0	0	0	1	0	0	0	16669	535	19	3	2570	3	TRIM71	3	32933252	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	16293154	32933252	165089178	88	85240											
CDC25A	993	broad.mit.edu	37	chr3	48209380	48209380	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgggtcattgtccaaaaTgttctcaatggttcctttgg	9	9	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48209380	C	C	48209380	3	2	80	1	0	0	0	0	1	0	0	0	3092	1464	51	5	613	5	CDC25A	3	48209380	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	15276128	48209380	149813050	89	85241											
MUC13	56667	broad.mit.edu	37	chr3	124626900	124626900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaagaaagcctgcGgggcagccaaggattgaaga	13	6	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124626900	T	T	124626900	1	4	80	0	1	0	0	0	0	0	0	0	10065	1131	39	1		1	MUC13	3	124626900	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	76417520	124626900	73395530	90	85242											
OSBPL11	114885	broad.mit.edu	37	chr3	125257138	125257138	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcaaagaatctcacagctGgcaaggggtttaacaacaga	9	8	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125257138	A	A	125257138	1	1	80	0	1	0	0	0	0	0	0	0	11370	1363	47	4		4	OSBPL11	3	125257138	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	630238	125257138	72765292	91	85243											
TF	7018	broad.mit.edu	37	chr3	133475542	133475542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagcgagtcattctcccGcatgttctctggccttcagt	9	13	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133475542	T	T	133475542	1	4	80	0	1	0	0	0	0	0	0	0	15908	1102	38	3		3	TF	3	133475542	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	8218404	133475542	64546888	92	85244											
C3orf36	80111	broad.mit.edu	37	chr3	133647605	133647605	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccactactcacagcctgggGtaagccagcctcaagaccct	8	17	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133647605	A	A	133647605	3	1	80	1	0	0	0	0	1	0	0	0	2248	1261	44	4	458	4	C3orf36	3	133647605	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	172063	133647605	64374825	93	85245											
CLRN1	7401	broad.mit.edu	37	chr3	150690460	150690460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaactgaacactccggcCatgcaaaaaatgattttctt	6	10	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150690460	A	A	150690460	3	1	80	1	0	0	0	0	1	0	0	0	3589	594	21	2	728	2	CLRN1	3	150690460	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	17042855	150690460	47331970	94	85246											
MECOM	2122	broad.mit.edu	37	chr3	168833655	168833655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaccaaagtatttttcagCaatagaagcaatagccttta	6	7	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168833655	A	A	168833655	3	1	80	1	0	0	0	0	1	0	0	0	9515	710	25	3	1754	3	MECOM	3	168833655	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	18143195	168833655	29188775	95	85247											
FNDC3B	64778	broad.mit.edu	37	chr3	172070576	172070576	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatatggcctttgtcttGctgttctgttttgtaggcct	10	7	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172070576	A	A	172070576	1	1	80	0	1	0	0	0	0	0	0	0	6028	1334	46	4		4	FNDC3B	3	172070576	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3236921	172070576	25951854	96	85248											
YEATS2	55689	broad.mit.edu	37	chr3	183432945	183432945	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcacagtgaagaactgaatGtcatcatgtctggaatcaag	9	7	5	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183432945	A	A	183432945	1	1	80	0	1	0	0	0	0	0	0	0	17599	1392	48	4		4	YEATS2	3	183432945	5'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08	11362369	183432945	14589485	97	85249											
HTR3C	170572	broad.mit.edu	37	chr3	183776413	183776413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgacttctgatcccagCagctctttgattgtcctctt	7	11	3	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183776413	A	A	183776413	1	1	80	0	1	0	0	0	0	0	0	0	7516	725	25	3		3	HTR3C	3	183776413	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	343468	183776413	14246017	98	85250											
AP2M1	1173	broad.mit.edu	37	chr3	183897989	183897989	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttggctacccacagaattccGagacaggcgcgctgaaaacc	10	13	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183897989	A	A	183897989	3	1	80	1	0	0	0	0	1	0	0	0	744	1059	37	4	383	4	AP2M1	3	183897989	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	121576	183897989	14124441	99	85251											
ECE2	9718	broad.mit.edu	37	chr3	183978895	183978895	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcggcgactccgggcccgGgccgcgtacctcgcttggct	16	16	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183978895	C	C	183978895	1	2	80	0	1	0	0	0	0	0	0	0	4930	1247	43	4		4	ECE2	3	183978895	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	80906	183978895	14043535	100	85252											
DGKG	1608	broad.mit.edu	37	chr3	185997925	185997925	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagtgaggaggccaggCttccaggtctggctctgccc	16	12	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185997925	T	T	185997925	1	4	80	0	1	0	0	0	0	0	0	0	4509	812	28	4		4	DGKG	3	185997925	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2019030	185997925	12024505	101	85253											
LMLN	89782	broad.mit.edu	37	chr3	197701401	197701401	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaatctaaatgttaaagatAtttttgtctgttacctgaag	6	4	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197701401	G	G	197701401	1	3	80	0	1	0	0	0	0	0	0	0	8921	464	16	5		5	LMLN	3	197701401	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	11703476	197701401	321029	102	85254											
CRMP1	1400	broad.mit.edu	37	chr4	5868302	5868302	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacaggtacacagccccgtCattctaggacagaatgccag	9	13	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5868302	T	T	5868302	1	4	80	0	1	0	0	0	0	0	0	0	3922	841	29	4		4	CRMP1	4	5868302	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08		5868302	185285974	103	85255											
APBB2	323	broad.mit.edu	37	chr4	40824085	40824085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctgcaagagacattatgCggcatccaatcaggagatcc	9	10	2	2	rs147543620	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40824085	T	T	40824085	1	4	80	0	1	0	0	0	0	0	0	0	763	783	27	4		4	APBB2	4	40824085	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	34955783	40824085	150330191	104	85256											
GABRG1	2565	broad.mit.edu	37	chr4	46042821	46042821	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcaactaatcagtttcAcgtaaattagcctgaaagct	6	8	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46042821	T	T	46042821	1	4	80	0	1	0	0	0	0	0	0	0	6231	174	6	5		5	GABRG1	4	46042821	3'UTR	SNP	A	TCGA-17-Z051-01A-01W-0747-08	5218736	46042821	145111455	105	85257											
ATP10D	57205	broad.mit.edu	37	chr4	47527626	47527626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggatagaatgtgaaagccCaaacaatgacctcagcagat	9	8	1	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47527626	A	A	47527626	3	1	80	1	0	0	0	0	1	0	0	0	1122	594	21	2	757	2	ATP10D	4	47527626	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1484805	47527626	143626650	106	85258											
HTN1	3346	broad.mit.edu	37	chr4	70921171	70921174	+	Intron	DEL	TCTC	-	-													agaaacacttgtattgtcatTctctattctctgcaatttgc							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70921174	-	-	70921171	6	5	80	0	1	1	0	1	0	0	0	0	7504	1798	62	0		0	HTN1	4	70921171	Intron	DEL	TCTC	TCGA-17-Z051-01A-01W-0747-08	23393545	70921171	120233105	107	85259											
SHROOM3	57619	broad.mit.edu	37	chr4	77675663	77675663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggaacgcaagggctgGtcacagacaccagggctgca	15	11	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77675663	T	T	77675663	3	4	80	1	0	0	0	0	1	0	0	0	14408	1261	44	3	4053	3	SHROOM3	4	77675663	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6754492	77675663	113478613	108	85260											
SLC10A6	345274	broad.mit.edu	37	chr4	87746812	87746812	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatatgcatcataacaatTagaagctatgacctcaggcc	6	11	3	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87746812	C	C	87746812	1	2	80	0	1	0	0	0	0	0	0	0	14491	1769	61	5		5	SLC10A6	4	87746812	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	10071149	87746812	103407464	109	85261											
ADH1A	124	broad.mit.edu	37	chr4	100197757	100197757	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggaggctgaagactgccAcaagggaaaacatctgtatt	12	7	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100197757	C	C	100197757	1	2	80	0	1	0	0	0	0	0	0	0	307	174	6	5		5	ADH1A	4	100197757	3'UTR	SNP	A	TCGA-17-Z051-01A-01W-0747-08	12450945	100197757	90956519	110	85262											
NFKB1	4790	broad.mit.edu	37	chr4	103517299	103517299	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgcatttatcttaggaacCatggacactgaatctaaaaa	6	7	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103517299	G	G	103517299	2	3	80	1	0	0	0	0	0	0	0	1	10470	581	21	4		4	NFKB1	4	103517299	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3319542	103517299	87636977	111	85263											
COL25A1	84570	broad.mit.edu	37	chr4	109784494	109784494	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttggtccgggggctccaGgttcccctcgctcacctctt	10	17	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109784494	A	A	109784494	3	1	80	1	0	0	0	0	1	0	0	0	3716	1000	35	4	987	4	COL25A1	4	109784494	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6267195	109784494	81369782	112	85264											
C4orf21	55345	broad.mit.edu	37	chr4	113505306	113505306	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatcgatcagctttgggtcCatcacatgtataaaagagac	8	9	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113505306	G	G	113505306	3	3	80	1	0	0	0	0	1	0	0	0	2277	603	21	4	2244	4	C4orf21	4	113505306	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3720812	113505306	77648970	113	85265											
ANK2	287	broad.mit.edu	37	chr4	114269409	114269409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcttttttccatcttGcatggcatcttggggcggaa	9	10	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114269409	T	T	114269409	1	4	80	0	1	0	0	0	0	0	0	0	621	1334	46	3		3	ANK2	4	114269409	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	764103	114269409	76884867	114	85266											
KIAA1109	84162	broad.mit.edu	37	chr4	123128593	123128593	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtattggactaaaacttaaTtttgtttagttgtgcatttt	7	3	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123128593	C	C	123128593	1	2	80	0	1	0	0	0	0	0	0	0	8278	1508	52	5		5	KIAA1109	4	123128593	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	8859184	123128593	68025683	115	85267											
ADAD1	132612	broad.mit.edu	37	chr4	123342571	123342571	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttaaaggaataaagttaTcataggaataaaatttaaga	6	3	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123342571	C	C	123342571	1	2	80	0	1	0	0	0	0	0	0	0	231	1450	50	5		5	ADAD1	4	123342571	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	213978	123342571	67811705	116	85268											
TKTL2	84076	broad.mit.edu	37	chr4	164394896	164394896	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccatcatctctcttttGtcggtttggcaaagcaaacg	9	10	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164394896	T	T	164394896	1	4	80	0	1	0	0	0	0	0	0	0	16059	1392	48	3		3	TKTL2	4	164394896	5'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08	41052325	164394896	26759380	117	85269											
MARCH1	55016	broad.mit.edu	37	chr4	165110143	165110143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattaacgagcctatggcagCtgctattggttatggcctgg	12	9	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165110143	A	A	165110143	1	1	80	0	1	0	0	0	0	0	0	0	9390	812	28	3		3	MARCH1	4	165110143	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	715247	165110143	26044133	118	85270											
TRIP13	9319	broad.mit.edu	37	chr5	904345	904345	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaagcaggtaactttcGgtaatctgtgagaggagagc	12	7	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	904345	A	A	904345	1	1	80	0	1	0	0	0	0	0	0	0	16682	1131	39	4		4	TRIP13	5	904345	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		904345	180010915	119	85271											
IRX2	153572	broad.mit.edu	37	chr5	2749503	2749503	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccgctcaccttcgtcCtctgccgaggtctccgtgcc	10	19	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2749503	T	T	2749503	2	4	80	1	0	0	0	0	0	0	0	1	7914	680	24	4		4	IRX2	5	2749503	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1845158	2749503	178165757	120	85272											
ADAMTS16	170690	broad.mit.edu	37	chr5	5146599	5146599	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcaagccccaggtagggagGcgaggttggtgatggtggaa	19	7	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5146599	C	C	5146599	1	2	80	0	1	0	0	0	0	0	0	0	261	1218	42	4		4	ADAMTS16	5	5146599	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2397096	5146599	175768661	121	85273											
SEMA5A	9037	broad.mit.edu	37	chr5	9318642	9318643	+	Intron	INS	-	T	T													ttgacttcaaaagcatcttcINStttctaagaatatgttcagc							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9318643	T	T	9318642	6	5	80	0	1	1	1	0	0	0	0	0	14150	928	32	0		0	SEMA5A	5	9318642	Intron	INS	-	TCGA-17-Z051-01A-01W-0747-08	4172043	9318642	171596618	122	85274											
MYO10	4651	broad.mit.edu	37	chr5	16703317	16703317	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattgaagtaatgaggctttGagctattcaaatgagctcac	9	7	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16703317	A	A	16703317	1	1	80	0	1	0	0	0	0	0	0	0	10156	1305	45	4		4	MYO10	5	16703317	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	7384675	16703317	164211943	123	85275											
CDH18	1016	broad.mit.edu	37	chr5	19473547	19473547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtctaggtctgcttctgCcagtctttgcttaataaatt	9	8	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19473547	A	A	19473547	3	1	80	1	0	0	0	0	1	0	0	0	3133	739	26	3	215	3	CDH18	5	19473547	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2770230	19473547	161441713	124	85276											
HEATR7B2	133558	broad.mit.edu	37	chr5	41038742	41038742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctgataaaaacatacccAagtctgggaaggaaaaaagc	10	7	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41038742	T	T	41038742	1	4	80	0	1	0	0	0	0	0	0	0	7102	145	5	5		5	HEATR7B2	5	41038742	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	21565195	41038742	139876518	125	85277											
HEATR7B2	133558	broad.mit.edu	37	chr5	41065625	41065625	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaataacaataacaacTagaaaaggggcagagtgagt	10	4	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41065625	C	C	41065625	1	2	80	0	1	0	0	0	0	0	0	0	7102	1537	53	5		5	HEATR7B2	5	41065625	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	26883	41065625	139849635	126	85278											
PLK2	10769	broad.mit.edu	37	chr5	57751609	57751609	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtactgtcttcaaggcctGaaaagtcagacagaaatgtt	10	7	3	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57751609	A	A	57751609	1	1	80	0	1	0	0	0	0	0	0	0	12191	1305	45	4		4	PLK2	5	57751609	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	16685984	57751609	123163651	127	85279											
ERAP1	51752	broad.mit.edu	37	chr5	96130966	96130966	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcatattgtgggatatGgttgccaatattaaagaaaa	9	4	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96130966	C	C	96130966	1	2	80	0	1	0	0	0	0	0	0	0	5245	1363	47	4		4	ERAP1	5	96130966	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	38379357	96130966	84784294	128	85280											
AQPEP	206338	broad.mit.edu	37	chr5	115350954	115350954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatattttacagaatacCttatccaattaaagatgtgg	6	5	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115350954	A	A	115350954	3	1	80	1	0	0	0	0	1	0	0	0	836	681	24	2	2522	2	AQPEP	5	115350954	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	19219988	115350954	65564306	129	85281											
ADAMTS19	171019	broad.mit.edu	37	chr5	128956583	128956583	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtacttggttccaatcctGgcttttccattaactcatgg	8	10	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128956583	A	A	128956583	1	1	80	0	1	0	0	0	0	0	0	0	264	1363	47	4		4	ADAMTS19	5	128956583	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	13605629	128956583	51958677	130	85282											
CSF2	1437	broad.mit.edu	37	chr5	131409603	131409603	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagccccagcacgcagccCtgggagcatgtgaatgccat	11	16	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131409603	A	A	131409603	2	1	80	1	0	0	0	0	0	0	0	1	3967	668	24	2		2	CSF2	5	131409603	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2453020	131409603	49505657	131	85283											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725827	140725827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctcgcactttgtgggcGcggacggggttcgggctttc	17	12	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140725827	T	T	140725827	3	4	80	1	0	0	0	0	1	0	0	0	11649	1087	38	3	2229	3	PCDHGA3	5	140725827	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	9316224	140725827	40189433	132	85284											
ARAP3	64411	broad.mit.edu	37	chr5	141059290	141059290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtatgaggtcctgccggCactatccctctcccccaacc	8	17	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141059290	A	A	141059290	1	1	80	0	1	0	0	0	0	0	0	0	842	725	25	3		3	ARAP3	5	141059290	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	333463	141059290	39855970	133	85285											
SPINK14	408187	broad.mit.edu	37	chr5	147550669	147550669	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcctatttgtacgagggtGgtggatacactgctgaaaca	13	7	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147550669	A	A	147550669	1	1	80	0	1	0	0	0	0	0	0	0	15177	1363	47	4		4	SPINK14	5	147550669	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6491379	147550669	33364591	134	85286											
KIF13A	63971	broad.mit.edu	37	chr6	17898352	17898352	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtgataaatcctggatttTtgcacactaagccagtatac	7	9	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17898352	C	C	17898352	1	2	80	0	1	0	0	0	0	0	0	0	8344	1856	64	5		5	KIF13A	6	17898352	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08		17898352	153216715	135	85287											
CDKAL1	54901	broad.mit.edu	37	chr6	20649696	20649696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaaaatgtcaatatagAtatttagtttatattaaaaa	3	1	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20649696	G	G	20649696	1	3	80	0	1	0	0	0	0	0	0	0	3182	348	12	5		5	CDKAL1	6	20649696	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	2751344	20649696	150465371	136	85288											
HIST1H3J	8356	broad.mit.edu	37	chr6	27861000	27861000	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgcgcattttatagcagcTgctgggcgcgaaaaagaagc	13	9	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27861000	A	A	27861000	1	1	80	0	1	0	0	0	0	0	0	0	7231	1595	55	5		5	HIST1H3J	6	27861000	5'Flank	SNP	T	TCGA-17-Z051-01A-01W-0747-08	7211304	27861000	143254067	137	85289											
DHX16	8449	broad.mit.edu	37	chr6	30624976	30624976	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagttgcagtaaggggcagGagctgagggaattagtagta	17	4	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30624976	C	C	30624976	1	2	80	0	1	0	0	0	0	0	0	0	4542	1189	41	4		4	DHX16	6	30624976	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2763976	30624976	140490091	138	85290											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34790899	34790899	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattcattcactcagtaaatAtttattgtctgcccacaatg	4	10	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34790899	G	G	34790899	1	3	80	0	1	0	0	0	0	0	0	0	17094	464	16	5		5	UHRF1BP1	6	34790899	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	4165923	34790899	136324168	139	85291											
STK38	11329	broad.mit.edu	37	chr6	36483072	36483072	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttaaagcagaggctgctcaGatcagtaaacgtgcatagtt	11	7	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36483072	T	T	36483072	1	4	80	0	1	0	0	0	0	0	0	0	15421	957	33	3		3	STK38	6	36483072	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1692173	36483072	134631995	140	85292											
DST	667	broad.mit.edu	37	chr6	56506674	56506675	+	Intron	INS	-	TTCC	TTCC													taaaattttcatactctacaINSttcctatttcaaatgcccat							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTCC	56506675	TTCC	TTCC	56506674	6	5	80	0	1	1	1	0	0	0	0	0	4823	232	8	0		0	DST	6	56506674	Intron	INS	-	TCGA-17-Z051-01A-01W-0747-08	20023602	56506674	114608393	141	85293											
EYS	346007	broad.mit.edu	37	chr6	66013965	66013965	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcaccaaaagaacatggagGaaagaagagaagaaacttca	9	6	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66013965	A	A	66013965	1	1	80	0	1	0	0	0	0	0	0	0	5375	1189	41	4		4	EYS	6	66013965	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	9507291	66013965	105101102	142	85294											
BAI3	577	broad.mit.edu	37	chr6	69349361	69349361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaaggtgagcgggggagCacttttgggggatggagtta	22	3	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69349361	A	A	69349361	1	1	80	0	1	0	0	0	0	0	0	0	1305	725	25	3		3	BAI3	6	69349361	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3335396	69349361	101765706	143	85295											
COL9A1	1297	broad.mit.edu	37	chr6	70944245	70944245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgtgatttatttaccttGtatgactctcatgcaaacct	5	9	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70944245	T	T	70944245	3	4	80	1	0	0	0	0	1	0	0	0	3739	1386	48	3	470	3	COL9A1	6	70944245	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1594884	70944245	100170822	144	85296											
C6orf221	154288	broad.mit.edu	37	chr6	74073068	74073068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcctggggtttcctggCtgctggggcggcagtctcgc	17	11	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74073068	A	A	74073068	1	1	80	0	1	0	0	0	0	0	0	0	2378	812	28	3		3	C6orf221	6	74073068	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3128823	74073068	97041999	145	85297											
CD109	135228	broad.mit.edu	37	chr6	74497246	74497246	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaagcagaaggttttttctCttggttaaatttgttggcat	11	4	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74497246	T	T	74497246	1	4	80	0	1	0	0	0	0	0	0	0	2993	928	32	4		4	CD109	6	74497246	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	424178	74497246	96617821	146	85298											
COL12A1	1303	broad.mit.edu	37	chr6	75830910	75830910	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagaaatagcaaataggaGaaggtcaaaacagagtttat	9	3	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75830910	T	T	75830910	1	4	80	0	1	0	0	0	0	0	0	0	3701	957	33	3		3	COL12A1	6	75830910	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1333664	75830910	95284157	147	85299											
COL12A1	1303	broad.mit.edu	37	chr6	75840460	75840460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgtaggggatcccaggCagaaagcacccatctctcac	9	12	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75840460	A	A	75840460	1	1	80	0	1	0	0	0	0	0	0	0	3701	725	25	3		3	COL12A1	6	75840460	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	9550	75840460	95274607	148	85300											
SLC35A1	10559	broad.mit.edu	37	chr6	88218324	88218324	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtcatctgtaagtatcCaggaattaaaggttcttagt	9	5	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88218324	T	T	88218324	1	4	80	0	1	0	0	0	0	0	0	0	14684	609	21	4		4	SLC35A1	6	88218324	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	12377864	88218324	82896743	149	85301											
RFX6	222546	broad.mit.edu	37	chr6	117240577	117240577	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaagtagacaacaactaaaTgcaacgtgagacccagaagt	8	9	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117240577	A	A	117240577	1	1	80	0	1	0	0	0	0	0	0	0	13375	1479	51	5		5	RFX6	6	117240577	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	29022253	117240577	53874490	150	85302											
LAMA2	3908	broad.mit.edu	37	chr6	129250580	129250580	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgagtagcttttggagaAggagtggacggtgagtctca	15	5	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129250580	C	C	129250580	1	2	80	0	1	0	0	0	0	0	0	0	8678	87	3	5		5	LAMA2	6	129250580	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	12010003	129250580	41864487	151	85303											
ENPP3	5169	broad.mit.edu	37	chr6	132014711	132014711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgactgcactatgccaagaaCgtcagaatcgacaaagttca	8	11	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132014711	A	A	132014711	3	1	80	1	0	0	0	0	1	0	0	0	5173	535	19	3	1417	3	ENPP3	6	132014711	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2764131	132014711	39100356	152	85304											
GPR126	57211	broad.mit.edu	37	chr6	142729338	142729338	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttatgtgatggcgtgcagtAttggaaacattactatccag	11	6	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142729338	G	G	142729338	3	3	80	1	0	0	0	0	1	0	0	0	6705	449	16	5	2382	5	GPR126	6	142729338	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	10714627	142729338	28385729	153	85305											
UTRN	7402	broad.mit.edu	37	chr6	144999406	144999406	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actataattttcagaataatAagaattttggaagcacttga	6	4	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144999406	G	G	144999406	1	3	80	0	1	0	0	0	0	0	0	0	17230	377	13	5		5	UTRN	6	144999406	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	2270068	144999406	26115661	154	85306											
C6orf97	80129	broad.mit.edu	37	chr6	151936917	151936917	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctttttaaaaaagtttgGactgtttcatgaatttgtat	6	3	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151936917	T	T	151936917	1	4	80	0	1	0	0	0	0	0	0	0	2399	1189	41	3		3	C6orf97	6	151936917	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6937511	151936917	19178150	155	85307											
SYNE1	23345	broad.mit.edu	37	chr6	152560552	152560552	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcctgagcccgagagcGcagctagttctgaggttatg	14	10	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152560552	A	A	152560552	1	1	80	0	1	0	0	0	0	0	0	0	15564	1102	38	4		4	SYNE1	6	152560552	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	623635	152560552	18554515	156	85308											
SLC22A1	6580	broad.mit.edu	37	chr6	160551313	160551313	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaagggcgaatctgttctcAgtggtggagaacatgaccag	13	8	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160551313	T	T	160551313	1	4	80	0	1	0	0	0	0	0	0	0	14553	203	7	5		5	SLC22A1	6	160551313	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	7990761	160551313	10563754	157	85309											
PDE1C	5137	broad.mit.edu	37	chr7	31864647	31864647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaccacatattaccttgGgcctttccatactttccaga	6	12	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31864647	A	A	31864647	1	1	80	0	1	0	0	0	0	0	0	0	11729	1247	43	4		4	PDE1C	7	31864647	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		31864647	127274016	158	85310											
AMPH	273	broad.mit.edu	37	chr7	38516385	38516385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccttttatagaggaggCatttaattttaaaaagtaaa	6	4	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38516385	A	A	38516385	1	1	80	0	1	0	0	0	0	0	0	0	588	725	25	3		3	AMPH	7	38516385	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	6651738	38516385	120622278	159	85311											
PKD1L1	168507	broad.mit.edu	37	chr7	47988007	47988007	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactcacctttcctggtcatCagaaatgttctgggctgcct	8	12	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47988007	T	T	47988007	3	4	80	1	0	0	0	0	1	0	0	0	12059	826	29	4	8746	4	PKD1L1	7	47988007	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	9471622	47988007	111150656	160	85312											
DDC	1644	broad.mit.edu	37	chr7	50595820	50595820	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattggccaggagccacaagTgctgccgaacttacaaagaa	10	10	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50595820	A	A	50595820	1	1	80	0	1	0	0	0	0	0	0	0	4358	1711	59	5		5	DDC	7	50595820	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	2607813	50595820	108542843	161	85313											
WBSCR17	64409	broad.mit.edu	37	chr7	70800688	70800688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagtgaaaaaatttcactgGaccgttccattccggattat	7	9	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70800688	T	T	70800688	3	4	80	1	0	0	0	0	1	0	0	0	17391	1174	41	3	397	3	WBSCR17	7	70800688	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	20204868	70800688	88337975	162	85314											
FKBP6	8468	broad.mit.edu	37	chr7	72710650	72710650	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttattgactgactcttggatCccaggctctgtggtaggcgt	12	9	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72710650	G	G	72710650	1	3	80	0	1	0	0	0	0	0	0	0	5969	870	30	4		4	FKBP6	7	72710650	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1909962	72710650	86428013	163	85315											
LIMK1	3984	broad.mit.edu	37	chr7	73535051	73535051	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggctcagcatctgcaggGgcctcatgccaggaagcctg	14	13	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73535051	A	A	73535051	1	1	80	0	1	0	0	0	0	0	0	0	8873	1247	43	4		4	LIMK1	7	73535051	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	824401	73535051	85603612	164	85316											
CALCR	799	broad.mit.edu	37	chr7	93065484	93065484	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaagaagaaattgaccTgcaaatatacggtgttatga	9	5	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93065484	C	C	93065484	5	2	80	1	0	0	0	0	0	0	1	0	2605	1594	55	5	507	5	CALCR	7	93065484	Splice_Site	SNP	T	TCGA-17-Z051-01A-01W-0747-08	19530433	93065484	66073179	165	85317											
ZAN	7455	broad.mit.edu	37	chr7	100389676	100389676	+	Missense_Mutation	SNP	G	C	C													aatgtagcccggagcagctgGcgagcaacagcacccaggcc							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100389676	C	C	100389676	3	2	80	1	0	0	0	0	1	0	0	0	17640	1203	42	4	7775	4	ZAN	7	100389676	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	7324192	100389676	58748987	166	85318	387	2									
ZAN	7455	broad.mit.edu	37	chr7	100389686	100389686	+	Missense_Mutation	SNP	G	C	C													ggagcagctggcgagcaacaGcacccaggcctgtagggtgc							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100389686	C	C	100389686	3	2	80	1	0	0	0	0	1	0	0	0	17640	971	34	4	7785	4	ZAN	7	100389686	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	10	100389686	58748977	167	85319	387	2									
MUC17	140453	broad.mit.edu	37	chr7	100681801	100681801	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgacaccagcacaccTgtgactacttattctcaagc	6	15	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100681801	A	A	100681801	2	1	80	1	0	0	0	0	0	0	0	1	10068	1567	55	5		5	MUC17	7	100681801	Silent	SNP	T	TCGA-17-Z051-01A-01W-0747-08	292115	100681801	58456862	168	85320											
SLC13A1	6561	broad.mit.edu	37	chr7	122787417	122787417	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgctctatatttgttatgGactgaatatttgtgtcccac	7	8	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122787417	T	T	122787417	1	4	80	0	1	0	0	0	0	0	0	0	14504	1189	41	3		3	SLC13A1	7	122787417	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	22105616	122787417	36351246	169	85321											
TSGA13	114960	broad.mit.edu	37	chr7	130356550	130356550	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcaaaggtgagctgaggGtacattttcttctgtgtcct	13	7	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130356550	A	A	130356550	2	1	80	1	0	0	0	0	0	0	0	1	16744	1256	44	4		4	TSGA13	7	130356550	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	7569133	130356550	28782113	170	85322											
CHRM2	1129	broad.mit.edu	37	chr7	136700194	136700194	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtacggctattgcagcCttctatttgccagtgatcat	9	9	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136700194	A	A	136700194	2	1	80	1	0	0	0	0	0	0	0	1	3408	668	24	2		2	CHRM2	7	136700194	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	6343644	136700194	22438469	171	85323											
MGAM	8972	broad.mit.edu	37	chr7	141740024	141740024	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactgtagctgcagctgcaTagacaagctacctttctgga	10	10	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141740024	C	C	141740024	1	2	80	0	1	0	0	0	0	0	0	0	9634	1421	49	5		5	MGAM	7	141740024	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	5039830	141740024	17398639	172	85324											
TPK1	27010	broad.mit.edu	37	chr7	144245755	144245755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggaatgttaatgtgcaCtgaagacctgggcaggatgc	14	6	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144245755	A	A	144245755	1	1	80	0	1	0	0	0	0	0	0	0	16528	580	20	3		3	TPK1	7	144245755	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2505731	144245755	14892908	173	85325											
CUL1	8454	broad.mit.edu	37	chr7	148481085	148481085	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggtcgcttcataaacaAcaacgcggttaccaagatgg	10	9	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148481085	G	G	148481085	3	3	80	1	0	0	0	0	1	0	0	0	4087	43	2	5	1252	5	CUL1	7	148481085	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	4235330	148481085	10657578	174	85326											
ABP1	26	broad.mit.edu	37	chr7	150554719	150554719	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcactcatgagttagccccCggcatcgactgcccggagac	11	15	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150554719	G	G	150554719	2	3	80	1	0	0	0	0	0	0	0	1	98	639	23	4		4	ABP1	7	150554719	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2073634	150554719	8583944	175	85327											
CRYGN	155051	broad.mit.edu	37	chr7	151135181	151135181	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagatgaactgctggccccgGaagtcggggtgattgaagca	15	8	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151135181	A	A	151135181	2	1	80	1	0	0	0	0	0	0	0	1	3950	1165	41	4		4	CRYGN	7	151135181	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	580462	151135181	8003482	176	85328											
CSMD1	64478	broad.mit.edu	37	chr8	4645811	4645811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattcctactgtatttgtgGcagtggcaggcagaagtaat	12	7	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4645811	T	T	4645811	1	4	80	0	1	0	0	0	0	0	0	0	3978	1218	42	3		3	CSMD1	8	4645811	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		4645811	141718211	177	85329											
DEFA1B	728358	broad.mit.edu	37	chr8	6873990	6873990	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcttaaacttagtgaatttCacagatgtttcttggaatca	6	6	4	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6873990	T	T	6873990	1	4	80	0	1	0	0	0	0	0	0	0	4422	841	29	4		4	DEFA1B	8	6873990	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2228179	6873990	139490032	178	85330											
KIAA1967	57805	broad.mit.edu	37	chr8	22463258	22463258	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggattgaagccttttcccCacgactctgaaagaggacag	10	10	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22463258	T	T	22463258	1	4	80	0	1	0	0	0	0	0	0	0	8335	609	21	4		4	KIAA1967	8	22463258	5'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	15589268	22463258	123900764	179	85331											
ELP3	55140	broad.mit.edu	37	chr8	28015992	28015992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggtttggtggagagGtttaaataaaaataaagatt	12	3	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28015992	T	T	28015992	1	4	80	0	1	0	0	0	0	0	0	0	5123	1276	44	3		3	ELP3	8	28015992	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	5552734	28015992	118348030	180	85332											
TEX15	56154	broad.mit.edu	37	chr8	30699884	30699884	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaaatctttcctaggggcaGacattacattcttcagcagt	7	10	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30699884	A	A	30699884	3	1	80	1	0	0	0	0	1	0	0	0	15901	942	33	4	1735	4	TEX15	8	30699884	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2683892	30699884	115664138	181	85333											
TEX15	56154	broad.mit.edu	37	chr8	30700551	30700551	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggtctgcaaattcagcctGatccaatatctcactaatac	5	11	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30700551	A	A	30700551	4	1	80	1	0	0	0	0	0	1	0	0	15901	1299	45	4	2402	4	TEX15	8	30700551	Nonsense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	667	30700551	115663471	182	85334											
ADAM2	2515	broad.mit.edu	37	chr8	39607136	39607136	+	Intron	DEL	A	-	-													gtgtagcaatgcagtttcctAaaattaggctcaatgatttc							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39607136	-	-	39607136	6	5	80	0	1	1	0	1	0	0	0	0	241	377	13	0		0	ADAM2	8	39607136	Intron	DEL	A	TCGA-17-Z051-01A-01W-0747-08	8906585	39607136	106756886	183	85335											
ANK1	286	broad.mit.edu	37	chr8	41552962	41552962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggcacttccgcagccaCgtggaggccccacctgcagg	12	15	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41552962	A	A	41552962	1	1	80	0	1	0	0	0	0	0	0	0	620	551	19	3		3	ANK1	8	41552962	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1945826	41552962	104811060	184	85336											
TRIM55	84675	broad.mit.edu	37	chr8	67039426	67039426	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttgatcacacaatccctGgaataatatccaggaaacac	5	12	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67039426	T	T	67039426	1	4	80	0	1	0	0	0	0	0	0	0	16654	1363	47	2		2	TRIM55	8	67039426	5'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08	25486464	67039426	79324596	185	85337											
C8orf34	116328	broad.mit.edu	37	chr8	69552813	69552813	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaatctaagattttgatAcaaagattgtactcttctgt	5	5	3	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69552813	G	G	69552813	1	3	80	0	1	0	0	0	0	0	0	0	2448	406	14	5		5	C8orf34	8	69552813	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	2513387	69552813	76811209	186	85338											
KIAA1429	25962	broad.mit.edu	37	chr8	95508758	95508758	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaacagagaaatttacaaaGatgcatccacacttattcat	5	8	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95508758	T	T	95508758	1	4	80	0	1	0	0	0	0	0	0	0	8301	957	33	3		3	KIAA1429	8	95508758	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	25955945	95508758	50855264	187	85339											
RIMS2	9699	broad.mit.edu	37	chr8	104581160	104581160	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcagtggcattgcaaaacTgatctgaaagcgagttcatg	10	8	3	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104581160	A	A	104581160	1	1	80	0	1	0	0	0	0	0	0	0	13479	1595	55	5		5	RIMS2	8	104581160	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	9072402	104581160	41782862	188	85340											
ENPP2	5168	broad.mit.edu	37	chr8	120629664	120629664	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccactggttagtgtggagatCctagattacagataagaaca	10	7	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120629664	A	A	120629664	1	1	80	0	1	0	0	0	0	0	0	0	5172	870	30	3		3	ENPP2	8	120629664	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	16048504	120629664	25734358	189	85341											
TRAPPC9	83696	broad.mit.edu	37	chr8	141310603	141310603	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcttctccacggttgtgtGcgataattggtgaatagatg	12	7	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141310603	A	A	141310603	3	1	80	1	0	0	0	0	1	0	0	0	16589	1319	46	4	1765	4	TRAPPC9	8	141310603	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	20680939	141310603	5053419	190	85342											
MPDZ	8777	broad.mit.edu	37	chr9	13150447	13150448	+	Intron	INS	-	A	A													agtataataatagtaaaattINSaaaaaataaataaataaaac							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13150448	A	A	13150447	6	5	80	0	1	1	1	0	0	0	0	0	9816	1769	61	0		0	MPDZ	9	13150447	Intron	INS	-	TCGA-17-Z051-01A-01W-0747-08		13150447	128062984	191	85343											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18636108	18636108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattaaaacacaagaataCaaatctttctactctatcat	2	8	4	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18636108	A	A	18636108	1	1	80	0	1	0	0	0	0	0	0	0	274	493	17	3		3	ADAMTSL1	9	18636108	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	5485661	18636108	122577323	192	85344											
C9orf82	79886	broad.mit.edu	37	chr9	26842781	26842781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacattccataatccccatgCcaccctcttttcccctgact	2	19	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26842781	A	A	26842781	1	1	80	0	1	0	0	0	0	0	0	0	2525	754	26	3		3	C9orf82	9	26842781	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	8206673	26842781	114370650	193	85345											
PIGO	84720	broad.mit.edu	37	chr9	35088992	35088992	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgatagtaagagtatggCtgagcctgtcttgcagatca	12	7	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35088992	A	A	35088992	1	1	80	0	1	0	0	0	0	0	0	0	11989	812	28	3		3	PIGO	9	35088992	3'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	8246211	35088992	106124439	194	85346											
VPS13A	23230	broad.mit.edu	37	chr9	79929509	79929509	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtatacagatggctcaacAttttcttccttctcattaaa	4	9	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79929509	G	G	79929509	2	3	80	1	0	0	0	0	0	0	0	1	17316	204	8	5		5	VPS13A	9	79929509	Silent	SNP	A	TCGA-17-Z051-01A-01W-0747-08	44840517	79929509	61283922	195	85347											
FANCC	2176	broad.mit.edu	37	chr9	98054987	98054987	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaataataagaaaagattTgaaaactgtaccgaaattct	5	6	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98054987	A	A	98054987	1	1	80	0	1	0	0	0	0	0	0	0	5721	1827	63	5		5	FANCC	9	98054987	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	18125478	98054987	43158444	196	85348											
FOXE1	2304	broad.mit.edu	37	chr9	100617383	100617383	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttccccgcaatctgagaaCgaacaggaatggagagagga	13	9	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100617383	T	T	100617383	1	4	80	0	1	0	0	0	0	0	0	0	6063	551	19	4		4	FOXE1	9	100617383	3'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2562396	100617383	40596048	197	85349											
PPP3R2	5535	broad.mit.edu	37	chr9	104356628	104356628	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagttggacgtcttgagCaaatcttgaaagagataggg	13	5	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104356628	A	A	104356628	1	1	80	0	1	0	0	0	0	0	0	0	12502	725	25	3		3	PPP3R2	9	104356628	3'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3739245	104356628	36856803	198	85350											
ABCA1	19	broad.mit.edu	37	chr9	107589148	107589148	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagacaatcatcttctgttCtcaacttgctgcttttattc	4	10	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107589148	A	A	107589148	1	1	80	0	1	0	0	0	0	0	0	0	28	928	32	3		3	ABCA1	9	107589148	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3232520	107589148	33624283	199	85351											
FKTN	2218	broad.mit.edu	37	chr9	108377491	108377491	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taattttcaaatttaattcaGatgccacagaaaggttccta	5	7	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108377491	C	C	108377491	1	2	80	0	1	0	0	0	0	0	0	0	5976	957	33	4		4	FKTN	9	108377491	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	788343	108377491	32835940	200	85352											
C5	727	broad.mit.edu	37	chr9	123776384	123776384	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtgctcttgatgacgCagagtgataacatctcaggc	11	9	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123776384	G	G	123776384	1	3	80	0	1	0	0	0	0	0	0	0	2303	725	25	4		4	C5	9	123776384	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	15398893	123776384	17437047	201	85353											
C9orf50	375759	broad.mit.edu	37	chr9	132382763	132382763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggggtcagcttgggcagccGcgggtcgctgctgcgtcgga	19	12	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132382763	A	A	132382763	3	1	80	1	0	0	0	0	1	0	0	0	2513	1086	38	4	1232	4	C9orf50	9	132382763	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	8606379	132382763	8830668	202	85354											
TUBB8	347688	broad.mit.edu	37	chr10	93941	93941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtcagctggaaaccctGcaggcagtcacagctctcag	13	12	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93941	T	T	93941	3	4	80	1	0	0	0	0	1	0	0	0	16887	1328	46	3	947	3	TUBB8	10	93941	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08		93941	135440806	203	85355											
ITIH2	3698	broad.mit.edu	37	chr10	7763666	7763666	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaatatgccctaactgcCgggagactgcggtagatggg	15	8	0	3	rs144713735		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7763666	T	T	7763666	3	4	80	1	0	0	0	0	1	0	0	0	7974	643	23	4	823	4	ITIH2	10	7763666	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	7669725	7763666	127771081	204	85356											
PTER	9317	broad.mit.edu	37	chr10	16528718	16528718	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgcaatactaatcacgcaGagaaaaccactaactatatg	5	9	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16528718	C	C	16528718	1	2	80	0	1	0	0	0	0	0	0	0	12845	957	33	4		4	PTER	10	16528718	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	8765052	16528718	119006029	205	85357											
CUBN	8029	broad.mit.edu	37	chr10	16990535	16990535	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcactgatgctagaatcagaGacgaatctcagcgtcagggc	12	10	3	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16990535	T	T	16990535	2	4	80	1	0	0	0	0	0	0	0	1	4084	929	33	3		3	CUBN	10	16990535	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	461817	16990535	118544212	206	85358											
KIAA1217	56243	broad.mit.edu	37	chr10	24834654	24834654	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactgtgtttggttggttttCtttgattgaattattctcag	9	4	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24834654	T	T	24834654	1	4	80	0	1	0	0	0	0	0	0	0	8286	928	32	4		4	KIAA1217	10	24834654	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	7844119	24834654	110700093	207	85359											
APBB1IP	54518	broad.mit.edu	37	chr10	26800771	26800771	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctggacaaccttttcgaGaaaactcattgtgactgcaa	8	9	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26800771	T	T	26800771	3	4	80	1	0	0	0	0	1	0	0	0	762	933	33	3	645	3	APBB1IP	10	26800771	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1966117	26800771	108733976	208	85360											
ALOX5	240	broad.mit.edu	37	chr10	45891251	45891251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaacacttggcattggGcattgttattgttcttcctc	9	10	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45891251	T	T	45891251	1	4	80	0	1	0	0	0	0	0	0	0	540	1218	42	3		3	ALOX5	10	45891251	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	19090480	45891251	89643496	209	85361											
RBP3	5949	broad.mit.edu	37	chr10	48383953	48383953	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagtaggagcacaagatGggaatggaggatgtggggcc	18	4	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48383953	T	T	48383953	2	4	80	1	0	0	0	0	0	0	0	1	13265	1335	47	2		2	RBP3	10	48383953	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2492702	48383953	87150794	210	85362											
ERCC6	2074	broad.mit.edu	37	chr10	50732305	50732305	+	Frame_Shift_Del	DEL	C	-	-													tccagacaggtccgcctctgCcccctccacctcgtcatctt							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50732305	-	-	50732305	7	5	80	1	0	1	0	1	0	0	0	0	5259	739	26	0	3378	0	ERCC6	10	50732305	Frame_Shift_Del	DEL	C	TCGA-17-Z051-01A-01W-0747-08	2348352	50732305	84802442	211	85363											
SLC18A3	6572	broad.mit.edu	37	chr10	50818821	50818821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgcgggccaggcccgggCggcggccaccaagctgtcgg	17	16	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50818821	A	A	50818821	3	1	80	1	0	0	0	0	1	0	0	0	14540	768	27	3	37	3	SLC18A3	10	50818821	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	86516	50818821	84715926	212	85364											
CHAT	1103	broad.mit.edu	37	chr10	50833700	50833700	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtagcctgctgcaatcagGtaagcaaccccttgtcttgg	10	12	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50833700	T	T	50833700	5	4	80	1	0	0	0	0	0	0	1	0	3344	1275	44	3	1000	3	CHAT	10	50833700	Splice_Site	SNP	G	TCGA-17-Z051-01A-01W-0747-08	14879	50833700	84701047	213	85365											
PRKG1	5592	broad.mit.edu	37	chr10	53564527	53564527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaatgcagcaccctgaaTttcagggtgctttttgcctt	9	10	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53564527	C	C	53564527	1	2	80	0	1	0	0	0	0	0	0	0	12628	1508	52	5		5	PRKG1	10	53564527	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	2730827	53564527	81970220	214	85366											
PRKG1	5592	broad.mit.edu	37	chr10	53893506	53893506	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggataaatcagaagagtttAtataatgtaaattttttcct	6	3	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53893506	T	T	53893506	1	4	80	0	1	0	0	0	0	0	0	0	12628	464	16	5		5	PRKG1	10	53893506	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	328979	53893506	81641241	215	85367											
ANK3	288	broad.mit.edu	37	chr10	62023496	62023496	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaatgaagttaaaggcaTggcataagcttgcgaagagg	12	6	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62023496	C	C	62023496	1	2	80	0	1	0	0	0	0	0	0	0	622	1479	51	5		5	ANK3	10	62023496	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	8129990	62023496	73511251	216	85368											
ARID5B	84159	broad.mit.edu	37	chr10	63852047	63852047	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcatctcccagttccaggTcttaggcagccagagtcgag	12	12	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63852047	G	G	63852047	3	3	80	1	0	0	0	0	1	0	0	0	924	1667	58	5	2863	5	ARID5B	10	63852047	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1828551	63852047	71682700	217	85369											
ZNF365	22891	broad.mit.edu	37	chr10	64415065	64415065	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtaagggattggctgacAttggtacttactgaagaaaa	13	4	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64415065	G	G	64415065	1	3	80	0	1	0	0	0	0	0	0	0	17995	232	8	5		5	ZNF365	10	64415065	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	563018	64415065	71119682	218	85370											
PPA1	5464	broad.mit.edu	37	chr10	71963053	71963053	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgaatcctactatgaattAcctgaaaattaacaggcata	5	7	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71963053	G	G	71963053	1	3	80	0	1	0	0	0	0	0	0	0	12382	406	14	5		5	PPA1	10	71963053	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	7547988	71963053	63571694	219	85371											
NUDT13	25961	broad.mit.edu	37	chr10	74879877	74879877	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctcctctgcttcagacttCagcacatcaatacctggccc	7	16	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74879877	G	G	74879877	4	3	80	1	0	0	0	0	0	1	0	0	10824	838	29	4	191	4	NUDT13	10	74879877	Nonsense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2916824	74879877	60654870	220	85372											
MYOZ1	58529	broad.mit.edu	37	chr10	75394386	75394386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccggcagagccactgcCccctgcctggctgccgcctc	11	20	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75394386	A	A	75394386	3	1	80	1	0	0	0	0	1	0	0	0	10189	623	22	2	553	2	MYOZ1	10	75394386	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	514509	75394386	60140361	221	85373											
PLAU	5328	broad.mit.edu	37	chr10	75672862	75672862	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acataattactgcaggtgagGtgggggcaacaaggaccaaa	13	7	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75672862	A	A	75672862	1	1	80	0	1	0	0	0	0	0	0	0	12117	1276	44	4		4	PLAU	10	75672862	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	278476	75672862	59861885	222	85374											
POLR3A	11128	broad.mit.edu	37	chr10	79741441	79741441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttttccagaaatggattgCtgggcaattttcagttgcag	11	7	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79741441	A	A	79741441	1	1	80	0	1	0	0	0	0	0	0	0	12323	812	28	3		3	POLR3A	10	79741441	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	4068579	79741441	55793306	223	85375											
MAT1A	4143	broad.mit.edu	37	chr10	82045204	82045204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcgtttgtcttataccCatgattaatttctcagtcta	6	9	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82045204	A	A	82045204	1	1	80	0	1	0	0	0	0	0	0	0	9421	609	21	2		2	MAT1A	10	82045204	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2303763	82045204	53489543	224	85376											
PAPSS2	9060	broad.mit.edu	37	chr10	89505590	89505590	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgccaccctgtaacaggCacaatgagtttgacttcatc	8	11	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89505590	T	T	89505590	3	4	80	1	0	0	0	0	1	0	0	0	11529	724	25	4	1773	4	PAPSS2	10	89505590	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	7460386	89505590	46029157	225	85377											
CRTAC1	55118	broad.mit.edu	37	chr10	99661210	99661210	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttctccctgaccgttcctCccaccagctgtcaaggatga	7	17	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99661210	A	A	99661210	1	1	80	0	1	0	0	0	0	0	0	0	3928	870	30	3		3	CRTAC1	10	99661210	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	10155620	99661210	35873537	226	85378											
SEC31B	25956	broad.mit.edu	37	chr10	102286656	102286656	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttagtgttacttggtcaaaGaagtgccatctgagctaaag	10	7	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102286656	C	C	102286656	1	2	80	0	1	0	0	0	0	0	0	0	14112	957	33	4		4	SEC31B	10	102286656	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2625446	102286656	33248091	227	85379											
KAZALD1	81621	broad.mit.edu	37	chr10	102824352	102824352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttaccgctgccttggccGcaatgccctgggtcaagtgg	12	14	1	0	rs36116329	byFrequency;by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102824352	T	T	102824352	3	4	80	1	0	0	0	0	1	0	0	0	8059	1087	38	3	777	3	KAZALD1	10	102824352	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	537696	102824352	32710395	228	85380											
SLK	9748	broad.mit.edu	37	chr10	105752422	105752422	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggtaaatacctttttgttCtttctgttcatatcttaaat	4	6	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105752422	T	T	105752422	1	4	80	0	1	0	0	0	0	0	0	0	14862	928	32	4		4	SLK	10	105752422	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2928070	105752422	29782325	229	85381											
COL17A1	1308	broad.mit.edu	37	chr10	105819578	105819578	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaccctgcttgggaaggtCtaggttagactggtaagaag	13	7	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105819578	A	A	105819578	1	1	80	0	1	0	0	0	0	0	0	0	3706	928	32	3		3	COL17A1	10	105819578	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	67156	105819578	29715169	230	85382											
ZDHHC6	64429	broad.mit.edu	37	chr10	114194168	114194168	+	Frame_Shift_Del	DEL	C	-	-													cctccatctacttcccatatCatatggaaaaacaaagactt							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114194168	-	-	114194168	7	5	80	1	0	1	0	1	0	0	0	0	17745	826	29	0	471	0	ZDHHC6	10	114194168	Frame_Shift_Del	DEL	C	TCGA-17-Z051-01A-01W-0747-08	8374590	114194168	21340579	231	85383											
NRAP	4892	broad.mit.edu	37	chr10	115423195	115423195	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcacagtgaaaacaggctTtatgccatatctagaaatca	6	9	3	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115423195	G	G	115423195	3	3	80	1	0	0	0	0	1	0	0	0	10733	1841	64	5	5273	5	NRAP	10	115423195	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1229027	115423195	20111552	232	85384											
CHST15	51363	broad.mit.edu	37	chr10	125780989	125780989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcaatcacaccatttgggCgacaatgaaaatcagtgtac	8	9	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125780989	T	T	125780989	1	4	80	0	1	0	0	0	0	0	0	0	3434	783	27	4		4	CHST15	10	125780989	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	10357794	125780989	9753758	233	85385											
STK32C	282974	broad.mit.edu	37	chr10	134137916	134137916	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcttcactttgcagtcTgaactcttttcaaggaagag	8	9	6	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134137916	C	C	134137916	1	2	80	0	1	0	0	0	0	0	0	0	15417	1595	55	5		5	STK32C	10	134137916	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	8356927	134137916	1396831	234	85386											
MUC6	4588	broad.mit.edu	37	chr11	1017909	1017909	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcatgggtaggggtgatgActgtgtgagtacttggagtc	18	4	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1017909	G	G	1017909	3	3	80	1	0	0	0	0	1	0	0	0	10074	275	10	5	2439	5	MUC6	11	1017909	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08		1017909	133988607	235	85387											
OR56A4	120793	broad.mit.edu	37	chr11	6023456	6023456	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaccagaaccagcaggactGtgctgaagaagaggatgagg	15	7	0	6			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6023456	C	C	6023456	3	2	80	1	0	0	0	0	1	0	0	0	11229	1377	48	4	176	4	OR56A4	11	6023456	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	5005547	6023456	128983060	236	85388											
PTH	5741	broad.mit.edu	37	chr11	13513995	13513995	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacattcacatcagctttgTctgcctctccaagacttttt	4	12	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13513995	C	C	13513995	3	2	80	1	0	0	0	0	1	0	0	0	12863	1667	58	5	46	5	PTH	11	13513995	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	7490539	13513995	121492521	237	85389											
NAV2	89797	broad.mit.edu	37	chr11	19735193	19735193	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctttagcggtcgccccCgccgccgctgccagggacgt	13	18	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19735193	G	G	19735193	1	3	80	0	1	0	0	0	0	0	0	0	10278	667	23	4		4	NAV2	11	19735193	5'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	6221198	19735193	115271323	238	85390											
NAV2	89797	broad.mit.edu	37	chr11	19970595	19970595	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgacggggatgttctgagcAagaacatccggaccgatgac	14	10	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19970595	G	G	19970595	3	3	80	1	0	0	0	0	1	0	0	0	10278	131	5	5	2731	5	NAV2	11	19970595	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	235402	19970595	115035921	239	85391											
OR5L1	219437	broad.mit.edu	37	chr11	55579435	55579435	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttgtgcttagctcttAggatccccttctatagatct	6	10	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55579435	G	G	55579435	3	3	80	1	0	0	0	0	1	0	0	0	11264	411	15	5	495	5	OR5L1	11	55579435	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	35608840	55579435	79427081	240	85392											
SLC22A12	116085	broad.mit.edu	37	chr11	64366232	64366232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtctcagagaggaggaGgtgcctggcgcccccagtgc	17	11	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64366232	T	T	64366232	1	4	80	0	1	0	0	0	0	0	0	0	14556	1015	35	2		2	SLC22A12	11	64366232	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	8786797	64366232	70640284	241	85393											
BATF2	116071	broad.mit.edu	37	chr11	64756651	64756651	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaaaggccaggagagggtGagggctgggatccacaacca	17	8	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64756651	A	A	64756651	3	1	80	1	0	0	0	0	1	0	0	0	1331	1290	45	4	53	4	BATF2	11	64756651	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	390419	64756651	70249865	242	85394											
TBX10	347853	broad.mit.edu	37	chr11	67402588	67402588	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggggccctgcccagtggGctcggccacagcttgggccc	15	16	0	0	rs147388176		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67402588	A	A	67402588	3	1	80	1	0	0	0	0	1	0	0	0	15773	1203	42	4	1031	4	TBX10	11	67402588	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2645937	67402588	67603928	243	85395											
FOLH1B	219595	broad.mit.edu	37	chr11	89391963	89391963	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccccaatataaaaagttaTagtgggttttacatgtgtag	8	6	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89391963	C	C	89391963	1	2	80	0	1	0	0	0	0	0	0	0	6038	1421	49	5		5	FOLH1B	11	89391963	5'Flank	SNP	T	TCGA-17-Z051-01A-01W-0747-08	21989375	89391963	45614553	244	85396											
ELMOD1	55531	broad.mit.edu	37	chr11	107514510	107514510	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtatactgctgaacagctaGcgtactgtccatttcatcaa	7	11	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107514510	C	C	107514510	1	2	80	0	1	0	0	0	0	0	0	0	5110	986	34	4		4	ELMOD1	11	107514510	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	18122547	107514510	27492006	245	85397											
APOA1	335	broad.mit.edu	37	chr11	116707679	116707679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcccacaggcctctgcCccctacccctgccctcaacc	4	23	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116707679	A	A	116707679	1	1	80	0	1	0	0	0	0	0	0	0	782	638	22	2		2	APOA1	11	116707679	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	9193169	116707679	18298837	246	85398											
DSCAML1	57453	broad.mit.edu	37	chr11	117303888	117303888	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttctttgtcctcgatgagCagctggaccctggggatgtc	12	12	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117303888	G	G	117303888	2	3	80	1	0	0	0	0	0	0	0	1	4809	697	25	4		4	DSCAML1	11	117303888	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	596209	117303888	17702628	247	85399											
TRAPPC4	51399	broad.mit.edu	37	chr11	118889791	118889791	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggggttgtgtcgggtccCttgtcccctcggcggaatcc	14	12	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118889791	G	G	118889791	1	3	80	0	1	0	0	0	0	0	0	0	16585	696	24	4		4	TRAPPC4	11	118889791	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1585903	118889791	16116725	248	85400											
OR6M1	390261	broad.mit.edu	37	chr11	123676277	123676277	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataatccagtgaggagttctGattgggtctcacatacacaa	9	8	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123676277	C	C	123676277	3	2	80	1	0	0	0	0	1	0	0	0	11299	1299	45	4	163	4	OR6M1	11	123676277	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4786486	123676277	11330239	249	85401											
WNT5B	81029	broad.mit.edu	37	chr12	1754922	1754922	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctgggcctcttccaccgGgatcctccttcttactgcct	7	18	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1754922	C	C	1754922	1	2	80	0	1	0	0	0	0	0	0	0	17519	1247	43	4		4	WNT5B	12	1754922	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		1754922	132096973	250	85402											
NRIP2	83714	broad.mit.edu	37	chr12	2940123	2940123	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccccaggatgctccccccAcccccccagccctgagcctt	6	23	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2940123	C	C	2940123	1	2	80	0	1	0	0	0	0	0	0	0	10748	174	6	5		5	NRIP2	12	2940123	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	1185201	2940123	130911772	251	85403											
PTPRO	5800	broad.mit.edu	37	chr12	15702194	15702194	+	Intron	DEL	T	-	-													ttagtgtataattttctcacTttttttgaatatatatatat							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15702194	-	-	15702194	6	5	80	0	1	1	0	1	0	0	0	0	12917	1624	56	0		0	PTPRO	12	15702194	Intron	DEL	T	TCGA-17-Z051-01A-01W-0747-08	12762071	15702194	118149701	252	85404											
SLCO1C1	53919	broad.mit.edu	37	chr12	20905513	20905513	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggttgacattttgcaaaCaaataaattgtaatcaaaag	6	4	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20905513	A	A	20905513	1	1	80	0	1	0	0	0	0	0	0	0	14839	493	17	3		3	SLCO1C1	12	20905513	3'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	5203319	20905513	112946382	253	85405											
ARNTL2	56938	broad.mit.edu	37	chr12	27556474	27556474	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattctggatttacagaGgtaatgttttattgctgcaa	9	4	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27556474	A	A	27556474	3	1	80	1	0	0	0	0	1	0	0	0	972	1014	35	4	1640	4	ARNTL2	12	27556474	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6650961	27556474	106295421	254	85406											
KIF21A	55605	broad.mit.edu	37	chr12	39735196	39735196	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaaatgtaggtcagtggTcacagaagtttctttcatca	10	7	5	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39735196	C	C	39735196	1	2	80	0	1	0	0	0	0	0	0	0	8358	1682	58	5		5	KIF21A	12	39735196	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	12178722	39735196	94116699	255	85407											
C12orf40	283461	broad.mit.edu	37	chr12	40020230	40020230	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttctagttcctggcGgagaggtcacagccttagct	10	12	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40020230	A	A	40020230	1	1	80	0	1	0	0	0	0	0	0	0	1699	1131	39	4		4	C12orf40	12	40020230	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	285034	40020230	93831665	256	85408											
PRICKLE1	144165	broad.mit.edu	37	chr12	42854161	42854161	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctttcactcatcggaggcTgccggatttcaatgtcatag	9	11	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42854161	A	A	42854161	3	1	80	1	0	0	0	0	1	0	0	0	12592	1580	55	5	553	5	PRICKLE1	12	42854161	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	2833931	42854161	90997734	257	85409											
DBX2	440097	broad.mit.edu	37	chr12	45410235	45410235	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatcttggacttgagtgcTgttgggggacgtcccatatt	12	9	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45410235	A	A	45410235	3	1	80	1	0	0	0	0	1	0	0	0	4293	1580	55	5	169	5	DBX2	12	45410235	Missense_Mutation	SNP	T	TCGA-17-Z051-01A-01W-0747-08	2556074	45410235	88441660	258	85410											
KRT86	3892	broad.mit.edu	37	chr12	52646311	52646311	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatctctgttctggcttcaGggtcagaggccaggtaacca	13	10	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52646311	C	C	52646311	1	2	80	0	1	0	0	0	0	0	0	0	8571	1015	35	4		4	KRT86	12	52646311	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	7236076	52646311	81205584	259	85411											
NACA	4666	broad.mit.edu	37	chr12	57110315	57110315	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaagccctttagatgcttGaggaacagtggcccccattt	11	10	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57110315	A	A	57110315	1	1	80	0	1	0	0	0	0	0	0	0	10227	1299	45	4		4	NACA	12	57110315	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4464004	57110315	76741580	260	85412											
FGD6	55785	broad.mit.edu	37	chr12	95528453	95528453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacccgagtttcataaaggCaagaagagttggctgatgga	13	7	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95528453	A	A	95528453	1	1	80	0	1	0	0	0	0	0	0	0	5894	725	25	3		3	FGD6	12	95528453	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	38418138	95528453	38323442	261	85413											
PWP1	11137	broad.mit.edu	37	chr12	108086464	108086464	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgtagtttcctttcccaaCtctagatgatccagagttag	7	10	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108086464	T	T	108086464	1	4	80	0	1	0	0	0	0	0	0	0	12951	580	20	4		4	PWP1	12	108086464	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	12558011	108086464	25765431	262	85414											
DDX55	57696	broad.mit.edu	37	chr12	124097858	124097858	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccagaatgtgcaggtgcAtgcggcctttgggttttgga	15	8	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124097858	T	T	124097858	1	4	80	0	1	0	0	0	0	0	0	0	4406	232	8	5		5	DDX55	12	124097858	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	16011394	124097858	9754037	263	85415											
SLC46A3	283537	broad.mit.edu	37	chr13	29285090	29285090	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttttctacaagcatccTaactcattgtatctaaaaat	2	10	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29285090	C	C	29285090	1	2	80	0	1	0	0	0	0	0	0	0	14760	1537	53	5		5	SLC46A3	13	29285090	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08		29285090	85884788	264	85416											
RB1	5925	broad.mit.edu	37	chr13	48941648	48941648	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttgaaaatctttctaaaCgatacgaagaaatttatctt	6	5	3	2	rs121913300		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48941648	T	T	48941648	4	4	80	1	0	0	0	0	0	1	0	0	13206	528	19	4	996	4	RB1	13	48941648	Nonsense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	19656558	48941648	66228230	265	85417											
CAB39L	81617	broad.mit.edu	37	chr13	49957151	49957151	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttataccaatgtcttaTaagttttcaataacatgaat	3	5	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49957151	C	C	49957151	1	2	80	0	1	0	0	0	0	0	0	0	2552	1421	49	5		5	CAB39L	13	49957151	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1015503	49957151	65212727	266	85418											
KPNA3	3839	broad.mit.edu	37	chr13	50280167	50280167	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaatacagtcagcaactacGaaacataagagagcagcatg	8	9	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50280167	A	A	50280167	1	1	80	0	1	0	0	0	0	0	0	0	8502	1073	37	4		4	KPNA3	13	50280167	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	323016	50280167	64889711	267	85419											
WDFY2	115825	broad.mit.edu	37	chr13	52277841	52277841	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctaaaatacttcttggtgGttttcactgccacaagagaa	7	8	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52277841	A	A	52277841	1	1	80	0	1	0	0	0	0	0	0	0	17396	1276	44	4		4	WDFY2	13	52277841	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1997674	52277841	62892037	268	85420											
PCDH9	5101	broad.mit.edu	37	chr13	67799571	67799571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggccctttgtcttgaagCctccttgggaactgcactct	11	12	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67799571	A	A	67799571	3	1	80	1	0	0	0	0	1	0	0	0	11612	739	26	3	727	3	PCDH9	13	67799571	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	15521730	67799571	47370307	269	85421											
COL4A1	1282	broad.mit.edu	37	chr13	110817048	110817048	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtccctttaaaaatgtcaTaggttttgatatgcattgaa	8	5	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110817048	C	C	110817048	1	2	80	0	1	0	0	0	0	0	0	0	3721	1421	49	5		5	COL4A1	13	110817048	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	43017477	110817048	4352830	270	85422											
PNP	4860	broad.mit.edu	37	chr14	20942825	20942825	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctagctatctgggctaggtgGatttttggtcctctccttcc	10	11	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20942825	T	T	20942825	1	4	80	0	1	0	0	0	0	0	0	0	12258	1189	41	3		3	PNP	14	20942825	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		20942825	86406715	271	85423											
MMP14	4323	broad.mit.edu	37	chr14	23306131	23306131	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagcagcagcttcagcccCgaagtaagtgagcttcccgg	11	13	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23306131	T	T	23306131	2	4	80	1	0	0	0	0	0	0	0	1	9746	639	23	4		4	MMP14	14	23306131	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2363306	23306131	84043409	272	85424											
NPAS3	64067	broad.mit.edu	37	chr14	34263367	34263367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgacagtacctggtgtGgaatttcatggcaattctgc	10	8	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34263367	T	T	34263367	1	4	80	0	1	0	0	0	0	0	0	0	10659	1363	47	2		2	NPAS3	14	34263367	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	10957236	34263367	73086173	273	85425											
WDHD1	11169	broad.mit.edu	37	chr14	55493492	55493492	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccatatctcattggcttcCgtgtggcaggcatgttttcc	10	12	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55493492	T	T	55493492	3	4	80	1	0	0	0	0	1	0	0	0	17398	652	23	4	3475	4	WDHD1	14	55493492	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	21230125	55493492	51856048	274	85426											
SLC38A6	145389	broad.mit.edu	37	chr14	61510329	61510329	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacctgtgactaattaattTtcatgaaagtgctaagtata	7	5	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61510329	G	G	61510329	1	3	80	0	1	0	0	0	0	0	0	0	14722	1856	64	5		5	SLC38A6	14	61510329	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	6016837	61510329	45839211	275	85427											
SYNE2	23224	broad.mit.edu	37	chr14	64487950	64487950	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acattgaaatgaagtaatctCaacccattctctagcaatgc	5	10	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64487950	A	A	64487950	1	1	80	0	1	0	0	0	0	0	0	0	15565	841	29	3		3	SYNE2	14	64487950	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2977621	64487950	42861590	276	85428											
PLEK2	26499	broad.mit.edu	37	chr14	67862037	67862038	+	Intron	INS	-	C	C													actgtgcagcaagcacagagINScccccccaaggggcagggtc							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67862038	C	C	67862037	6	5	80	0	1	1	1	0	0	0	0	0	12149	986	34	0		0	PLEK2	14	67862037	Intron	INS	-	TCGA-17-Z051-01A-01W-0747-08	3374087	67862037	39487503	277	85429											
ZFYVE26	23503	broad.mit.edu	37	chr14	68249317	68249317	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgggttctaagctctactCtaccacttaccaccctgggc	7	15	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68249317	T	T	68249317	1	4	80	0	1	0	0	0	0	0	0	0	17794	928	32	4		4	ZFYVE26	14	68249317	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	387280	68249317	39100223	278	85430											
RGS6	9628	broad.mit.edu	37	chr14	72818766	72818766	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatttataattacattatgGgagaaaataacacttctttt	4	6	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72818766	A	A	72818766	1	1	80	0	1	0	0	0	0	0	0	0	13418	1247	43	4		4	RGS6	14	72818766	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4569449	72818766	34530774	279	85431											
ZNF410	57862	broad.mit.edu	37	chr14	74390003	74390003	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtgggaaatagaggaaTagagttttagagttgttaat	13	0	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74390003	C	C	74390003	1	2	80	0	1	0	0	0	0	0	0	0	18017	1421	49	5		5	ZNF410	14	74390003	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1571237	74390003	32959537	280	85432											
TMEM90A	646658	broad.mit.edu	37	chr14	74876544	74876544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaagcactgaggccagggCactggaggcaggacctaaag	15	10	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74876544	A	A	74876544	1	1	80	0	1	0	0	0	0	0	0	0	16341	725	25	3		3	TMEM90A	14	74876544	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	486541	74876544	32472996	281	85433											
VIPAR	63894	broad.mit.edu	37	chr14	77902399	77902399	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttcacctttagagcgtcCcttaaagaaagacatcgcat	7	11	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77902399	T	T	77902399	1	4	80	0	1	0	0	0	0	0	0	0	17295	638	22	4		4	VIPAR	14	77902399	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3025855	77902399	29447141	282	85434											
PRIMA1	145270	broad.mit.edu	37	chr14	94203551	94203551	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcccagctggggttccctTcggcttgaagctgggtgcag	15	11	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94203551	A	A	94203551	1	1	80	0	1	0	0	0	0	0	0	0	12598	1798	62	5		5	PRIMA1	14	94203551	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	16301152	94203551	13145989	283	85435											
SERPINA9	327657	broad.mit.edu	37	chr14	94930931	94930931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctggccgcagaagacCctgacttcacctttcaggcc	8	15	4	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94930931	T	T	94930931	1	4	80	0	1	0	0	0	0	0	0	0	14208	638	22	4		4	SERPINA9	14	94930931	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	727380	94930931	12418609	284	85436											
C14orf49	161176	broad.mit.edu	37	chr14	95903363	95903363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcagaggtgaaagagcccCcctggccatgtgtcctggga	14	12	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95903363	T	T	95903363	1	4	80	0	1	0	0	0	0	0	0	0	1789	638	22	4		4	C14orf49	14	95903363	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	972432	95903363	11446177	285	85437											
AHNAK2	113146	broad.mit.edu	37	chr14	105414449	105414449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatccacctccacgctggGctgagacacctccacgtcgg	10	17	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105414449	T	T	105414449	3	4	80	1	0	0	0	0	1	0	0	0	415	1203	42	3	10052	3	AHNAK2	14	105414449	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	9511086	105414449	1935091	286	85438											
OR4N4	283694	broad.mit.edu	37	chr15	22333100	22333100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccctgagaacacacttcGgccagggccagaacaagttc	9	14	1	2	rs145157294	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22333100	T	T	22333100	1	4	80	0	1	0	0	0	0	0	0	0	11172	1131	39	1		1	OR4N4	15	22333100	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		22333100	80198292	287	85439											
TUBGCP5	114791	broad.mit.edu	37	chr15	22848330	22848330	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatagtaactcatttaacacAtgtaagttatttgtatttat	4	4	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22848330	T	T	22848330	3	4	80	1	0	0	0	0	1	0	0	0	16895	231	8	5	954	5	TUBGCP5	15	22848330	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	515230	22848330	79683062	288	85440											
GABRG3	2567	broad.mit.edu	37	chr15	27271912	27271912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccacagtaaaaccgaccGtaattgacgttgacatttat	6	10	1	2	rs79497756		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27271912	T	T	27271912	3	4	80	1	0	0	0	0	1	0	0	0	6233	1145	40	3	224	3	GABRG3	15	27271912	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4423582	27271912	75259480	289	85441											
APBA2	321	broad.mit.edu	37	chr15	29398932	29398932	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcccggctgcccgctcGgggaagctgagcatcgggga	19	13	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29398932	T	T	29398932	2	4	80	1	0	0	0	0	0	0	0	1	759	1103	39	1		1	APBA2	15	29398932	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2127020	29398932	73132460	290	85442											
RYR3	6263	broad.mit.edu	37	chr15	34072642	34072642	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagcactgtggctttcTtggtctgagaggagccagga	14	10	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34072642	C	C	34072642	1	2	80	0	1	0	0	0	0	0	0	0	13881	1624	56	5		5	RYR3	15	34072642	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	4673710	34072642	68458750	291	85443											
ELL3	80237	broad.mit.edu	37	chr15	44067862	44067862	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagtactgggataccttGgacttcaggctttgccccac	11	12	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44067862	A	A	44067862	1	1	80	0	1	0	0	0	0	0	0	0	5106	1363	47	4		4	ELL3	15	44067862	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	9995220	44067862	58463530	292	85444											
SEMA6D	80031	broad.mit.edu	37	chr15	48058726	48058726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccattcttactaatcaGtctgtgttcttggttctgct	7	11	5	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48058726	T	T	48058726	1	4	80	0	1	0	0	0	0	0	0	0	14155	1044	36	3		3	SEMA6D	15	48058726	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3990864	48058726	54472666	293	85445											
RORA	6095	broad.mit.edu	37	chr15	60907032	60907032	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacgcacatgcagacagAcactgacatgcttacataca	6	13	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60907032	G	G	60907032	1	3	80	0	1	0	0	0	0	0	0	0	13639	290	10	5		5	RORA	15	60907032	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	12848306	60907032	41624360	294	85446											
SMAD3	4088	broad.mit.edu	37	chr15	67473513	67473513	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttttccagagtgtccatggGaccccatcgagggagcatgg	14	10	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67473513	T	T	67473513	1	4	80	0	1	0	0	0	0	0	0	0	14873	1189	41	3		3	SMAD3	15	67473513	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6566481	67473513	35057879	295	85447											
SLC28A1	9154	broad.mit.edu	37	chr15	85461673	85461673	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgggatggagtgggctGtctggggtctcctgggcccc	19	11	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85461673	C	C	85461673	1	2	80	0	1	0	0	0	0	0	0	0	14645	1392	48	4		4	SLC28A1	15	85461673	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	17988160	85461673	17069719	296	85448											
POLG	5428	broad.mit.edu	37	chr15	89865208	89865209	+	Missense_Mutation	DNP	GG	AC	AC													catacctgatcacagcacggGgcagagctgacctgggcagc							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	89865209	AC	AC	89865208	3	1	80	1	0	0	0	0	1	0	0	0	12295	1232	43	4	1290	4	POLG	15	89865208	Missense_Mutation	DNP	GG	TCGA-17-Z051-01A-01W-0747-08	4403535	89865208	12666184	297	85449											
TTLL13	440307	broad.mit.edu	37	chr15	90794645	90794645	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggattacaggcatgagccacCgcgcccagcccatcctggtc	11	16	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90794645	G	G	90794645	1	3	80	0	1	0	0	0	0	0	0	0	16852	667	23	4		4	TTLL13	15	90794645	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	929437	90794645	11736747	298	85450											
ADAMTS17	170691	broad.mit.edu	37	chr15	100673398	100673398	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggagctgcctgttgggggCagtgggaagtcagaggttac	19	6	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100673398	G	G	100673398	1	3	80	0	1	0	0	0	0	0	0	0	262	725	25	4		4	ADAMTS17	15	100673398	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	9878753	100673398	1857994	299	85451											
TBC1D24	57465	broad.mit.edu	37	chr16	2546726	2546726	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaacaagtactgccagGcggcccacaagctgatggtg	14	10	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2546726	A	A	2546726	3	1	80	1	0	0	0	0	1	0	0	0	15733	1203	42	4	579	4	TBC1D24	16	2546726	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08		2546726	87808027	300	85452											
ROGDI	79641	broad.mit.edu	37	chr16	4851175	4851175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagagatcaagggtcccgCccagagtcgcagggcttgta	14	11	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4851175	A	A	4851175	1	1	80	0	1	0	0	0	0	0	0	0	13631	754	26	3		3	ROGDI	16	4851175	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2304449	4851175	85503578	301	85453											
A2BP1	54715	broad.mit.edu	37	chr16	7629729	7629729	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaaagagcatcggaagaGagcactgtggtccactgaga	13	8	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7629729	A	A	7629729	1	1	80	0	1	0	0	0	0	0	0	0	3	957	33	4		4	A2BP1	16	7629729	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2778554	7629729	82725024	302	85454											
ARHGAP17	55114	broad.mit.edu	37	chr16	24964411	24964411	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagtgcaggttgggacactCagactaagtggcagtgtgtt	14	7	1	1	rs144428074	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24964411	A	A	24964411	1	1	80	0	1	0	0	0	0	0	0	0	869	841	29	3		3	ARHGAP17	16	24964411	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	17334682	24964411	65390342	303	85455											
IL21R	50615	broad.mit.edu	37	chr16	27441334	27441334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggggaggccgggggagcCctgagcccgcctggctcacc	19	14	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27441334	A	A	27441334	1	1	80	0	1	0	0	0	0	0	0	0	7741	638	22	2		2	IL21R	16	27441334	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2476923	27441334	62913419	304	85456											
BOLA2	552900	broad.mit.edu	37	chr16	29645164	29645164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcattagatctacaccCcagcaagcgattacctttaa	4	12	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29645164	A	A	29645164	1	1	80	0	1	0	0	0	0	0	0	0	1492	638	22	2		2	BOLA2	16	29645164	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2203830	29645164	60709589	305	85457											
ABCC12	94160	broad.mit.edu	37	chr16	48162431	48162431	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtcactttgctcctctGggccagtggctcccttggct	12	14	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48162431	A	A	48162431	3	1	80	1	0	0	0	0	1	0	0	0	52	1348	47	4	2709	4	ABCC12	16	48162431	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	18517267	48162431	42192322	306	85458											
ABCC11	85320	broad.mit.edu	37	chr16	48244989	48244989	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctctccagctccagtgccCcattgacgatcccgggacag	9	17	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48244989	T	T	48244989	3	4	80	1	0	0	0	0	1	0	0	0	51	623	22	4	2750	4	ABCC11	16	48244989	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	82558	48244989	42109764	307	85459											
NUP93	9688	broad.mit.edu	37	chr16	56866268	56866268	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaagacaggctcactctctCacagttccagaagcagttgt	8	12	3	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56866268	T	T	56866268	3	4	80	1	0	0	0	0	1	0	0	0	10867	838	29	4	1355	4	NUP93	16	56866268	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	8621279	56866268	33488485	308	85460											
RSPRY1	89970	broad.mit.edu	37	chr16	57261339	57261339	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacaatgccagaagtaagcCtcacatacacccatgctgga	8	12	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57261339	G	G	57261339	3	3	80	1	0	0	0	0	1	0	0	0	13824	681	24	4	1285	4	RSPRY1	16	57261339	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	395071	57261339	33093414	309	85461											
CDH11	1009	broad.mit.edu	37	chr16	64981349	64981349	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcacagtatttaccacttTgatgtcctcgcagttttatt	5	9	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64981349	G	G	64981349	1	3	80	0	1	0	0	0	0	0	0	0	3127	1827	63	5		5	CDH11	16	64981349	3'UTR	SNP	T	TCGA-17-Z051-01A-01W-0747-08	7720010	64981349	25373404	310	85462											
PMFBP1	83449	broad.mit.edu	37	chr16	72157612	72157612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctgtcagccctccttcCgagtcaggcctcttctatct	8	16	5	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72157612	T	T	72157612	1	4	80	0	1	0	0	0	0	0	0	0	12229	667	23	4		4	PMFBP1	16	72157612	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	7176263	72157612	18197141	311	85463											
MLKL	197259	broad.mit.edu	37	chr16	74729467	74729467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggcagccttgaagcgGttcatggctgtggttaactt	13	9	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74729467	T	T	74729467	3	4	80	1	0	0	0	0	1	0	0	0	9712	1252	44	3	1297	3	MLKL	16	74729467	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2571855	74729467	15625286	312	85464											
GCSH	2653	broad.mit.edu	37	chr16	81121309	81121309	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaaaatctctaagaagtTataactaaaccctccagtaa	3	10	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81121309	C	C	81121309	1	2	80	0	1	0	0	0	0	0	0	0	6368	1769	61	5		5	GCSH	16	81121309	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	6391842	81121309	9233444	313	85465											
PIK3R5	23533	broad.mit.edu	37	chr17	8789784	8789784	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaggcggttcggggcaggGaggccttacctcggtctgat	17	9	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8789784	T	T	8789784	1	4	80	0	1	0	0	0	0	0	0	0	12017	1189	41	3		3	PIK3R5	17	8789784	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		8789784	72405426	314	85466											
MYOCD	93649	broad.mit.edu	37	chr17	12642628	12642628	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccagcacccccatagccGtgcatgctgctgtaaaggta	9	16	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12642628	A	A	12642628	3	1	80	1	0	0	0	0	1	0	0	0	10181	1145	40	4	726	4	MYOCD	17	12642628	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3852844	12642628	68552582	315	85467											
KCNH4	23415	broad.mit.edu	37	chr17	40332734	40332734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgcagggcactccccgcCctgttcctgcaccgcggctt	10	20	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40332734	A	A	40332734	1	1	80	0	1	0	0	0	0	0	0	0	8104	638	22	2		2	KCNH4	17	40332734	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	27690106	40332734	40862476	316	85468											
AARSD1	80755	broad.mit.edu	37	chr17	41106915	41106915	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaatatgaccacacctcCccagtctggactgttcctga	8	13	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41106915	A	A	41106915	4	1	80	1	0	0	0	0	0	1	0	0	21	632	22	2	323	2	AARSD1	17	41106915	Nonsense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	774181	41106915	40088295	317	85469											
MPP2	4355	broad.mit.edu	37	chr17	41956498	41956498	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccttccacatctatgcaGgggggaccacgtcctgcctc	9	17	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41956498	A	A	41956498	1	1	80	0	1	0	0	0	0	0	0	0	9828	1015	35	4		4	MPP2	17	41956498	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	849583	41956498	39238712	318	85470											
NFE2L1	4779	broad.mit.edu	37	chr17	46128958	46128959	+	Frame_Shift_Ins	INS	-	C	C													ggaggatttgggggctgtagINScccccccagtcagtggagac							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46128959	C	C	46128958	7	5	80	1	0	1	1	0	0	0	0	0	10462	971	34	0	480	0	NFE2L1	17	46128958	Frame_Shift_Ins	INS	-	TCGA-17-Z051-01A-01W-0747-08	4172460	46128958	35066252	319	85471											
KIF2B	84643	broad.mit.edu	37	chr17	51901864	51901864	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctttgggtcagaacaagccTcacaccccattcagagccag	9	14	3	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51901864	A	A	51901864	2	1	80	1	0	0	0	0	0	0	0	1	8368	1538	54	5		5	KIF2B	17	51901864	Silent	SNP	T	TCGA-17-Z051-01A-01W-0747-08	5772906	51901864	29293346	320	85472											
RAD51C	5889	broad.mit.edu	37	chr17	56810040	56810040	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcttttgatgcttagaacAttgtccccaaaatagtagta	7	8	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56810040	G	G	56810040	1	3	80	0	1	0	0	0	0	0	0	0	13096	232	8	5		5	RAD51C	17	56810040	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	4908176	56810040	24385170	321	85473											
USP32	84669	broad.mit.edu	37	chr17	58469206	58469206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggctgcccgtcgcgggCctcccaggcagctcgcccag	13	19	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58469206	A	A	58469206	1	1	80	0	1	0	0	0	0	0	0	0	17190	754	26	3		3	USP32	17	58469206	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1659166	58469206	22726004	322	85474											
APPBP2	10513	broad.mit.edu	37	chr17	58556404	58556404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actatgacatataaatatcaTctcagagatttactcaaatg	4	7	3	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58556404	C	C	58556404	1	2	80	0	1	0	0	0	0	0	0	0	818	1450	50	5		5	APPBP2	17	58556404	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	87198	58556404	22638806	323	85475											
COLEC12	81035	broad.mit.edu	37	chr18	346516	346516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagggtatctgtgcaagtgGtcctgacttcatttagattg	11	6	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	346516	T	T	346516	3	4	80	1	0	0	0	0	1	0	0	0	3744	1261	44	3	1146	3	COLEC12	18	346516	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08		346516	77730732	324	85476											
POTEC	388468	broad.mit.edu	37	chr18	14543225	14543225	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccaactagcaggaaacCctgggtttccaatctgtttg	8	11	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14543225	A	A	14543225	1	1	80	0	1	0	0	0	0	0	0	0	12358	638	22	2		2	POTEC	18	14543225	5'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	14196709	14543225	63534023	325	85477											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851554	14851554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatctctttcatgaaaattGcatgttgaaaaaggaaattg	8	4	2	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14851554	T	T	14851554	3	4	80	1	0	0	0	0	1	0	0	0	659	1319	46	3	3396	3	ANKRD30B	18	14851554	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	308329	14851554	63225694	326	85478											
OSBPL1A	114876	broad.mit.edu	37	chr18	21819151	21819151	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtggtggactctaaatcaCcaacaatgcagagggaagga	13	7	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21819151	G	G	21819151	1	3	80	0	1	0	0	0	0	0	0	0	11371	522	18	4		4	OSBPL1A	18	21819151	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	6967597	21819151	56258097	327	85479											
DSC3	1825	broad.mit.edu	37	chr18	28609407	28609407	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttttatatgtttaaagagGtattaaatctcaatgaaaca	5	3	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28609407	A	A	28609407	1	1	80	0	1	0	0	0	0	0	0	0	4807	1276	44	4		4	DSC3	18	28609407	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6790256	28609407	49467841	328	85480											
MAPRE2	10982	broad.mit.edu	37	chr18	32720352	32720352	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacccaccccggctgctcttGacacttccattgtgtgtggg	11	14	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32720352	A	A	32720352	1	1	80	0	1	0	0	0	0	0	0	0	9387	1305	45	4		4	MAPRE2	18	32720352	3'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4110945	32720352	45356896	329	85481											
C18orf10	25941	broad.mit.edu	37	chr18	34385477	34385477	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtgctctaggggaacaTgcgttaaggagaattacatg	13	5	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34385477	A	A	34385477	1	1	80	0	1	0	0	0	0	0	0	0	1913	1479	51	5		5	C18orf10	18	34385477	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1665125	34385477	43691771	330	85482											
FUT6	2528	broad.mit.edu	37	chr19	5831491	5831491	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagcccaggccccacaCcagcctctcaggtgaaccaa	9	18	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5831491	A	A	5831491	1	1	80	0	1	0	0	0	0	0	0	0	6168	522	18	3		3	FUT6	19	5831491	3'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08		5831491	53297492	331	85483											
CYP4F12	66002	broad.mit.edu	37	chr19	15791312	15791312	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atataacgatcttcaacaagAgtgcaaacatcatgcttgtg	7	8	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15791312	T	T	15791312	3	4	80	1	0	0	0	0	1	0	0	0	4220	304	11	5	522	5	CYP4F12	19	15791312	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	9959821	15791312	43337671	332	85484											
ZNF681	148213	broad.mit.edu	37	chr19	23926607	23926607	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttctctccagtatgaattCtcttatgtctagtaaggtgt	8	7	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23926607	T	T	23926607	3	4	80	1	0	0	0	0	1	0	0	0	18215	913	32	4	196	4	ZNF681	19	23926607	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	8135295	23926607	35202376	333	85485											
ZBTB32	27033	broad.mit.edu	37	chr19	36207448	36207448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcggccatgaccaagcacCtgcggacacacggggccgct	12	16	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36207448	A	A	36207448	3	1	80	1	0	0	0	0	1	0	0	0	17661	680	24	2	1276	2	ZBTB32	19	36207448	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	12280841	36207448	22921535	334	85486											
SARS2	54938	broad.mit.edu	37	chr19	39421424	39421424	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcccgcccactccgcgtttAgaccaattgcaaggcagcga	10	15	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39421424	T	T	39421424	1	4	80	0	1	0	0	0	0	0	0	0	13957	435	15	5		5	SARS2	19	39421424	5'UTR	SNP	A	TCGA-17-Z051-01A-01W-0747-08	3213976	39421424	19707559	335	85487											
SPTBN4	57731	broad.mit.edu	37	chr19	41019462	41019462	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgaggtggtgcagcaccgGtgagcgcgcacatgtgggac	18	10	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41019462	T	T	41019462	5	4	80	1	0	0	0	0	0	0	1	0	15239	1275	44	3	2816	3	SPTBN4	19	41019462	Splice_Site	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1598038	41019462	18109521	336	85488											
PRR19	284338	broad.mit.edu	37	chr19	42813664	42813664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaccgcgcccagccctcCctattcactttgctactccc	5	21	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42813664	T	T	42813664	1	4	80	0	1	0	0	0	0	0	0	0	12697	638	22	4		4	PRR19	19	42813664	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1794202	42813664	16315319	337	85489											
C19orf61	56006	broad.mit.edu	37	chr19	44237426	44237426	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtgctgggtctctctcTgatcaggataggacttgtct	14	8	4	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44237426	G	G	44237426	1	3	80	0	1	0	0	0	0	0	0	0	1962	1595	55	5		5	C19orf61	19	44237426	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	1423762	44237426	14891557	338	85490											
GIPR	2696	broad.mit.edu	37	chr19	46184989	46184989	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgccatcgtctcacaggtGcagtcggagatccgccgtgg	14	13	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46184989	T	T	46184989	2	4	80	1	0	0	0	0	0	0	0	1	6459	1306	46	3		3	GIPR	19	46184989	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1947563	46184989	12943994	339	85491											
GLTSCR2	29997	broad.mit.edu	37	chr19	48260234	48260234	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaccctctcacccaccctcAgctcctttcctctgtcccca	3	23	3	0	rs889143	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48260234	T	T	48260234	1	4	80	0	1	0	0	0	0	0	0	0	6539	203	7	5		5	GLTSCR2	19	48260234	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	2075245	48260234	10868749	340	85492											
SULT2B1	6820	broad.mit.edu	37	chr19	49055445	49055445	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcagacgctgtcgctgcgCacacctggcctctgtgccgc	13	16	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49055445	G	G	49055445	1	3	80	0	1	0	0	0	0	0	0	0	15500	725	25	4		4	SULT2B1	19	49055445	5'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	795211	49055445	10073538	341	85493											
POLD1	5424	broad.mit.edu	37	chr19	50906152	50906152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgagcacagagggtgtGgagatggcctggaggtgaga	21	4	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50906152	T	T	50906152	1	4	80	0	1	0	0	0	0	0	0	0	12285	1363	47	2		2	POLD1	19	50906152	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1850707	50906152	8222831	342	85494											
LRRC4B	94030	broad.mit.edu	37	chr19	51022505	51022505	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgcagcttggacaggtaCtcgaaggcctgcgtgggcac	14	13	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51022505	T	T	51022505	2	4	80	1	0	0	0	0	0	0	0	1	9094	564	20	4		4	LRRC4B	19	51022505	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	116353	51022505	8106478	343	85495											
ZNF468	90333	broad.mit.edu	37	chr19	53344722	53344722	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaaaggtcttgccacaCtcattacacttgtaaggttt	7	10	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53344722	T	T	53344722	2	4	80	1	0	0	0	0	0	0	0	1	18055	564	20	4		4	ZNF468	19	53344722	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2322217	53344722	5784261	344	85496											
CACNG6	59285	broad.mit.edu	37	chr19	54496139	54496139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccggccataagatgatgtGgtccaacttcttcctgcaag	9	12	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54496139	T	T	54496139	3	4	80	1	0	0	0	0	1	0	0	0	2587	1357	47	2	10	2	CACNG6	19	54496139	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1151417	54496139	4632844	345	85497											
LILRA1	11024	broad.mit.edu	37	chr19	55107416	55107416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggtgaggagcccagcgGgttcagtcagggacacaggc	17	11	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55107416	T	T	55107416	1	4	80	0	1	0	0	0	0	0	0	0	8856	1247	43	2		2	LILRA1	19	55107416	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	611277	55107416	4021567	346	85498											
ZNF667	63934	broad.mit.edu	37	chr19	56973727	56973727	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggatttggatttcccccGtgcagaaggcatcctttcct	9	12	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56973727	A	A	56973727	3	1	80	1	0	0	0	0	1	0	0	0	18201	1144	40	4	1835	4	ZNF667	19	56973727	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1866311	56973727	2155256	347	85499											
SIRPD	128646	broad.mit.edu	37	chr20	1517678	1517678	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcttaaagaggaaggggtgGcaaagaaagaggccctagga	16	5	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1517678	C	C	1517678	1	2	80	0	1	0	0	0	0	0	0	0	14448	1218	42	4		4	SIRPD	20	1517678	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08		1517678	61507842	348	85500											
TASP1	55617	broad.mit.edu	37	chr20	13561718	13561718	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagttgtttcaataaaacaaCttgaatatatcttggaaatt	5	5	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13561718	G	G	13561718	1	3	80	0	1	0	0	0	0	0	0	0	15708	580	20	4		4	TASP1	20	13561718	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	12044040	13561718	49463802	349	85501											
INSM1	3642	broad.mit.edu	37	chr20	20349775	20349775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgcagcacaaatgctcGcgcatcgtgcgtgtggagta	14	11	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20349775	T	T	20349775	2	4	80	1	0	0	0	0	0	0	0	1	7841	1074	38	3		3	INSM1	20	20349775	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6788057	20349775	42675745	350	85502											
CHD6	84181	broad.mit.edu	37	chr20	40118274	40118274	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacgagctaccagggagagCaggagtcagccttgacaaac	12	10	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40118274	G	G	40118274	1	3	80	0	1	0	0	0	0	0	0	0	3360	725	25	4		4	CHD6	20	40118274	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	19768499	40118274	22907246	351	85503											
SLC12A5	57468	broad.mit.edu	37	chr20	44676787	44676787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgcaaggctcaggagaCagggggaagggagcagggcc	20	7	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44676787	A	A	44676787	1	1	80	0	1	0	0	0	0	0	0	0	14499	493	17	3		3	SLC12A5	20	44676787	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	4558513	44676787	18348733	352	85504											
SALL4	57167	broad.mit.edu	37	chr20	50408809	50408809	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatttctcacagacgtgCgtctcctcccgacgaagccg	9	16	2	1	rs141479802		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50408809	A	A	50408809	2	1	80	1	0	0	0	0	0	0	0	1	13924	755	27	3		3	SALL4	20	50408809	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	5732022	50408809	12616711	353	85505											
C20orf107	388799	broad.mit.edu	37	chr20	55111082	55111082	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatttacaaaaacaggtggAgggccaaatttggccatagt	10	6	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55111082	T	T	55111082	1	4	80	0	1	0	0	0	0	0	0	0	2099	319	11	5		5	C20orf107	20	55111082	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	4702273	55111082	7914438	354	85506											
ZNF831	128611	broad.mit.edu	37	chr20	57770709	57770709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcataggctttcctctgcGgatcaagcccaggcggggtt	14	11	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57770709	T	T	57770709	1	4	80	0	1	0	0	0	0	0	0	0	18314	1131	39	1		1	ZNF831	20	57770709	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2659627	57770709	5254811	355	85507											
TPD52L2	7165	broad.mit.edu	37	chr20	62514218	62514218	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctgagacctggccaggaGtgaggtgaggtgttggaggt	19	7	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62514218	C	C	62514218	1	2	80	0	1	0	0	0	0	0	0	0	16523	1044	36	4		4	TPD52L2	20	62514218	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4743509	62514218	511302	356	85508											
APP	351	broad.mit.edu	37	chr21	27462251	27462251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccagccccacggccggcCggctcacctaagcagcggta	11	18	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462251	A	A	27462251	1	1	80	0	1	0	0	0	0	0	0	0	817	667	23	1		1	APP	21	27462251	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08		27462251	20667644	357	85509											
GRIK1	2897	broad.mit.edu	37	chr21	30968955	30968955	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatggagcgtgaaacccaGaaggaatcatggtgtgtgag	14	5	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30968955	T	T	30968955	1	4	80	0	1	0	0	0	0	0	0	0	6839	957	33	3		3	GRIK1	21	30968955	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3506704	30968955	17160940	358	85510											
GCFC1	94104	broad.mit.edu	37	chr21	34120697	34120697	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctatcaattatagcctaTgccctatcacccctgcaaaa	3	13	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34120697	C	C	34120697	1	2	80	0	1	0	0	0	0	0	0	0	6351	1479	51	5		5	GCFC1	21	34120697	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	3151742	34120697	14009198	359	85511											
POTEH	23784	broad.mit.edu	37	chr22	16256609	16256609	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctagttccagtcttagcatGacaatttcttcctgcaacgt	6	11	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16256609	T	T	16256609	1	4	80	0	1	0	0	0	0	0	0	0	12363	1305	45	3		3	POTEH	22	16256609	3'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08		16256609	35047957	360	85512											
CDC45	8318	broad.mit.edu	37	chr22	19502215	19502215	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactatttgtgactttggtAttttaccaagagttcctgac	7	7	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19502215	G	G	19502215	1	3	80	0	1	0	0	0	0	0	0	0	3111	464	16	5		5	CDC45	22	19502215	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	3245606	19502215	31802351	361	85513											
MYO18B	84700	broad.mit.edu	37	chr22	26164635	26164635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgggacccccaagaccaCagagctgaaagaggctgagc	13	12	0	5			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26164635	T	T	26164635	3	4	80	1	0	0	0	0	1	0	0	0	10160	478	17	4	762	4	MYO18B	22	26164635	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	6662420	26164635	25139931	362	85514											
SEZ6L	23544	broad.mit.edu	37	chr22	26690555	26690555	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgagtaggagttcttaactCaatgctttgctaaaatagct	8	6	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26690555	G	G	26690555	1	3	80	0	1	0	0	0	0	0	0	0	14256	841	29	4		4	SEZ6L	22	26690555	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	525920	26690555	24614011	363	85515											
RAC2	5880	broad.mit.edu	37	chr22	37627429	37627429	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccgcacttctgggaacCactgggcaggtgggtggggg	20	9	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37627429	T	T	37627429	4	4	80	1	0	0	0	0	0	1	0	0	13083	608	21	4	296	4	RAC2	22	37627429	Nonsense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	10936874	37627429	13677137	364	85516											
CARD10	29775	broad.mit.edu	37	chr22	37893099	37893099	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccccagaccatctgtccCcataaaacgacagtccatct	5	17	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37893099	G	G	37893099	3	3	80	1	0	0	0	0	1	0	0	0	2670	623	22	4	1260	4	CARD10	22	37893099	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	265670	37893099	13411467	365	85517											
CDC42EP1	11135	broad.mit.edu	37	chr22	37964470	37964470	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgggtcctgctgcaaatccCccagcccctgccgcaagctc	9	19	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37964470	T	T	37964470	2	4	80	1	0	0	0	0	0	0	0	1	3105	610	22	4		4	CDC42EP1	22	37964470	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	71371	37964470	13340096	366	85518											
ENTHD1	150350	broad.mit.edu	37	chr22	40216867	40216867	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtaaaacaagattataggAccatgttgtgggttgaattt	11	3	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40216867	G	G	40216867	1	3	80	0	1	0	0	0	0	0	0	0	5179	290	10	5		5	ENTHD1	22	40216867	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	2252397	40216867	11087699	367	85519											
CELSR1	9620	broad.mit.edu	37	chr22	46780524	46780524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaactcttcatggatggtgtCgaatcgcgggaccctggctc	13	11	2	0	rs149238203		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46780524	A	A	46780524	3	1	80	1	0	0	0	0	1	0	0	0	3251	884	31	3	2309	3	CELSR1	22	46780524	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	6563657	46780524	4524042	368	85520											
MOV10L1	54456	broad.mit.edu	37	chr22	50580512	50580512	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgataatttctagaaTaggaaaacaatgacggacca	8	8	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50580512	C	C	50580512	2	2	80	1	0	0	0	0	0	0	0	1	9813	1403	49	5		5	MOV10L1	22	50580512	Silent	SNP	T	TCGA-17-Z051-01A-01W-0747-08	3799988	50580512	724054	369	85521											
ARSH	347527	broad.mit.edu	37	chrX	2951409	2951409	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaaggaagatgacatcCttcccatggctccctgagac	10	12	0	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2951409	T	T	2951409	3	4	80	1	0	0	0	0	1	0	0	0	997	681	24	4	1706	4	ARSH	23	2951409	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08		2951409	152319151	370	85522											
ARSF	416	broad.mit.edu	37	chrX	3002623	3002623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggactgcctcctcatgcGggggcacgagatcacggagc	15	13	2	1	rs148764513		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3002623	T	T	3002623	3	4	80	1	0	0	0	0	1	0	0	0	995	1116	39	1	764	1	ARSF	23	3002623	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	51214	3002623	152267937	371	85523											
MXRA5	25878	broad.mit.edu	37	chrX	3229155	3229155	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcacaggctacagtgacCacgtctccatagggcacctg	10	15	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3229155	T	T	3229155	2	4	80	1	0	0	0	0	0	0	0	1	10097	581	21	4		4	MXRA5	23	3229155	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	226532	3229155	152041405	372	85524											
BMX	660	broad.mit.edu	37	chrX	15543335	15543335	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaagctaaaacatatctgaAcaaaattacttttgtcattt	3	6	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15543335	T	T	15543335	1	4	80	0	1	0	0	0	0	0	0	0	1479	58	2	5		5	BMX	23	15543335	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	12314180	15543335	139727225	373	85525											
SCML2	10389	broad.mit.edu	37	chrX	18278317	18278317	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatcactattttacatggcCcagaagcgacatctttatat	5	10	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18278317	G	G	18278317	3	3	80	1	0	0	0	0	1	0	0	0	14023	623	22	4	1087	4	SCML2	23	18278317	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2734982	18278317	136992243	374	85526											
SMPX	23676	broad.mit.edu	37	chrX	21755846	21755846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaagaaatccaactcaCcaaaaatcacatttgatctc	5	10	3	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21755846	A	A	21755846	1	1	80	0	1	0	0	0	0	0	0	0	14924	522	18	3		3	SMPX	23	21755846	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	3477529	21755846	133514714	375	85527											
EIF2S3	1968	broad.mit.edu	37	chrX	24078375	24078375	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatttaaaggggaactaagGcctttaaggatcatatctat	8	5	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24078375	A	A	24078375	1	1	80	0	1	0	0	0	0	0	0	0	5051	1218	42	4		4	EIF2S3	23	24078375	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2322529	24078375	131192185	376	85528											
MAGEB6	158809	broad.mit.edu	37	chrX	26211857	26211857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttaaagccaagatggtcGctctctgctgaagatattga	10	7	1	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26211857	T	T	26211857	1	4	80	0	1	0	0	0	0	0	0	0	9271	1102	38	3		3	MAGEB6	23	26211857	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2133482	26211857	129058703	377	85529											
TAB3	257397	broad.mit.edu	37	chrX	30877604	30877604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactggtaggtaacttacCtgtaacatgcactgagacac	8	10	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30877604	A	A	30877604	3	1	80	1	0	0	0	0	1	0	0	0	15616	695	24	2	2064	2	TAB3	23	30877604	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	4665747	30877604	124392956	378	85530											
DMD	1756	broad.mit.edu	37	chrX	32591628	32591628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtttttataagaccattgAaagctagaaagtacatacgg	10	5	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32591628	T	T	32591628	1	4	80	0	1	0	0	0	0	0	0	0	4620	261	9	5		5	DMD	23	32591628	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	1714024	32591628	122678932	379	85531											
DMD	1756	broad.mit.edu	37	chrX	32614063	32614063	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgttgaaatgatttgctctCaaatggtgaaatttatttct	8	4	2	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32614063	A	A	32614063	1	1	80	0	1	0	0	0	0	0	0	0	4620	841	29	3		3	DMD	23	32614063	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	22435	32614063	122656497	380	85532											
TMEM47	83604	broad.mit.edu	37	chrX	34675059	34675059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggtccagacacagcgCcaggaagatgcacaccagcc	10	17	0	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34675059	A	A	34675059	3	1	80	1	0	0	0	0	1	0	0	0	16294	739	26	3	469	3	TMEM47	23	34675059	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2060996	34675059	120595501	381	85533											
CXorf22	170063	broad.mit.edu	37	chrX	35985704	35985704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttgaaattaaaaatacCatctataaacttatattcaa	2	5	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35985704	A	A	35985704	1	1	80	0	1	0	0	0	0	0	0	0	4135	609	21	2		2	CXorf22	23	35985704	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1310645	35985704	119284856	382	85534											
SRPX	8406	broad.mit.edu	37	chrX	38063048	38063048	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagaaaggaaggaaggCaggaaggaagaaaggaaaaa	15	1	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38063048	A	A	38063048	1	1	80	0	1	0	0	0	0	0	0	0	15282	725	25	3		3	SRPX	23	38063048	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2077344	38063048	117207512	383	85535											
RPGR	6103	broad.mit.edu	37	chrX	38129066	38129066	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgatttattgaggggActcttttgaacagaaaaatc	8	5	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38129066	G	G	38129066	3	3	80	1	0	0	0	0	1	0	0	0	13659	275	10	5	190	5	RPGR	23	38129066	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	66018	38129066	117141494	384	85536											
MED14	9282	broad.mit.edu	37	chrX	40572356	40572356	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaaaatgagaatcttcctCctgacctagaattttcagtc	6	9	2	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40572356	A	A	40572356	1	1	80	0	1	0	0	0	0	0	0	0	9525	870	30	3		3	MED14	23	40572356	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2443290	40572356	114698204	385	85537											
HDAC6	10013	broad.mit.edu	37	chrX	48665048	48665048	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcctgcctggcctcaggCtctgtcctcaggctggtgga	14	13	3	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48665048	T	T	48665048	2	4	80	1	0	0	0	0	0	0	0	1	7078	784	28	4		4	HDAC6	23	48665048	Silent	SNP	C	TCGA-17-Z051-01A-01W-0747-08	8092692	48665048	106605512	386	85538											
TIMM17B	10245	broad.mit.edu	37	chrX	48754090	48754090	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctggaagactccgccaccGatgacacccatagtgaaggc	11	14	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48754090	T	T	48754090	2	4	80	1	0	0	0	0	0	0	0	1	16032	1048	37	3		3	TIMM17B	23	48754090	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	89042	48754090	106516470	387	85539											
PIM2	11040	broad.mit.edu	37	chrX	48771550	48771550	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtttgggggccaggcacCggcggattagggcacagcag	18	9	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48771550	T	T	48771550	3	4	80	1	0	0	0	0	1	0	0	0	12023	652	23	4	145	4	PIM2	23	48771550	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	17460	48771550	106499010	388	85540											
MAGIX	79917	broad.mit.edu	37	chrX	49021003	49021003	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctaggtagtttccatgGcatgtcccccaacagccctc	9	15	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49021003	C	C	49021003	1	2	80	0	1	0	0	0	0	0	0	0	9285	1218	42	4		4	MAGIX	23	49021003	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	249453	49021003	106249557	389	85541											
CCDC22	28952	broad.mit.edu	37	chrX	49106213	49106214	+	Intron	DNP	CC	AG	AG													cctgggggcaggatggggagCcaaggcgggccggggggaca							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	49106214	AG	AG	49106213	1	1	80	0	1	0	0	0	0	0	0	0	2824	754	26	3		3	CCDC22	23	49106213	Intron	DNP	CC	TCGA-17-Z051-01A-01W-0747-08	85210	49106213	106164347	390	85542											
MAGED1	9500	broad.mit.edu	37	chrX	51640246	51640246	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatcctctcatctgtaattCaaccaagtttttttgtaaat	3	9	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51640246	T	T	51640246	1	4	80	0	1	0	0	0	0	0	0	0	9275	841	29	4		4	MAGED1	23	51640246	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2534033	51640246	103630314	391	85543											
HUWE1	10075	broad.mit.edu	37	chrX	53560897	53560897	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttcccaatcttgggtaGggtcctgaaaacatcaagta	10	8	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53560897	C	C	53560897	1	2	80	0	1	0	0	0	0	0	0	0	7531	1015	35	4		4	HUWE1	23	53560897	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1920651	53560897	101709663	392	85544											
APEX2	27301	broad.mit.edu	37	chrX	55029451	55029451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacgtgtactgcccccatgCggaccctgggaggcctgagc	13	15	0	1	rs75862529		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55029451	A	A	55029451	3	1	80	1	0	0	0	0	1	0	0	0	772	768	27	3	493	3	APEX2	23	55029451	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1468554	55029451	100241109	393	85545											
FAAH2	158584	broad.mit.edu	37	chrX	57419833	57419833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggaatactgggatttgatGttaagaaacttttctattcc	8	7	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57419833	T	T	57419833	1	4	80	0	1	0	0	0	0	0	0	0	5400	1392	48	3		3	FAAH2	23	57419833	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2390382	57419833	97850727	394	85546											
MTMR8	55613	broad.mit.edu	37	chrX	63526191	63526191	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtttgagcttgttcagaGgttctagatgcagtgtttgt	12	5	2	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63526191	A	A	63526191	1	1	80	0	1	0	0	0	0	0	0	0	10043	1015	35	4		4	MTMR8	23	63526191	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	6106358	63526191	91744369	395	85547											
ZC3H12B	340554	broad.mit.edu	37	chrX	64722832	64722832	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcccttgagtaacagcctcAtgcaaccatgttatgagcca	7	12	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64722832	G	G	64722832	3	3	80	1	0	0	0	0	1	0	0	0	17688	217	8	5	2272	5	ZC3H12B	23	64722832	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	1196641	64722832	90547728	396	85548											
MSN	4478	broad.mit.edu	37	chrX	64958325	64958325	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccaggggacttgggttgAagacacctgggtcctgagga	15	11	0	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64958325	G	G	64958325	1	3	80	0	1	0	0	0	0	0	0	0	9979	261	9	5		5	MSN	23	64958325	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	235493	64958325	90312235	397	85549											
VSIG4	11326	broad.mit.edu	37	chrX	65242472	65242472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggattctggaagcagaagGcagatggatctaaattatcc	12	6	2	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65242472	T	T	65242472	1	4	80	0	1	0	0	0	0	0	0	0	17352	1218	42	3		3	VSIG4	23	65242472	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	284147	65242472	90028088	398	85550											
MED12	9968	broad.mit.edu	37	chrX	70342079	70342079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgctgtcctagtgccttGgtttggcactactcactgac	10	12	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70342079	T	T	70342079	3	4	80	1	0	0	0	0	1	0	0	0	9521	1339	47	2	1161	2	MED12	23	70342079	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	5099607	70342079	84928481	399	85551											
MED12	9968	broad.mit.edu	37	chrX	70347043	70347043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgccggtggaagtggcctGggaagagcatgcacttcctc	14	10	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70347043	T	T	70347043	1	4	80	0	1	0	0	0	0	0	0	0	9521	1363	47	2		2	MED12	23	70347043	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	4964	70347043	84923517	400	85552											
NLGN3	54413	broad.mit.edu	37	chrX	70389605	70389605	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctactaccgtaaggacaaAcggcgccaggagcccctgcg	11	15	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70389605	T	T	70389605	3	4	80	1	0	0	0	0	1	0	0	0	10558	40	2	5	2231	5	NLGN3	23	70389605	Missense_Mutation	SNP	A	TCGA-17-Z051-01A-01W-0747-08	42562	70389605	84880955	401	85553											
RLIM	51132	broad.mit.edu	37	chrX	73803249	73803249	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgcactgtaacttgtgGctgtgcattaagatgttgct	11	7	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73803249	T	T	73803249	1	4	80	0	1	0	0	0	0	0	0	0	13501	1218	42	3		3	RLIM	23	73803249	3'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3413644	73803249	81467311	402	85554											
KIAA2022	340533	broad.mit.edu	37	chrX	73962891	73962891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcatttactttttcacCctctagtgagtcaacatcat	3	13	5	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73962891	A	A	73962891	3	1	80	1	0	0	0	0	1	0	0	0	8339	623	22	2	3057	2	KIAA2022	23	73962891	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	159642	73962891	81307669	403	85555											
MAGEE1	57692	broad.mit.edu	37	chrX	75649284	75649284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggatcgagcacctccgtgCcgcccacccctggtggggga	15	15	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75649284	T	T	75649284	3	4	80	1	0	0	0	0	1	0	0	0	9277	739	26	4	963	4	MAGEE1	23	75649284	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1686393	75649284	79621276	404	85556											
LPAR4	2846	broad.mit.edu	37	chrX	78010311	78010311	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatatttcctaccggtcCatagtgtcagagtggtgaac	10	8	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78010311	A	A	78010311	1	1	80	0	1	0	0	0	0	0	0	0	8994	609	21	2		2	LPAR4	23	78010311	5'UTR	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2361027	78010311	77260249	405	85557											
SH3BGRL	6451	broad.mit.edu	37	chrX	80552722	80552722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaagcaaagcagcaagCatgaaccttaagcactgtgc	10	10	0	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80552722	A	A	80552722	3	1	80	1	0	0	0	0	1	0	0	0	14354	710	25	3	355	3	SH3BGRL	23	80552722	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2542411	80552722	74717838	406	85558											
PCDH11X	27328	broad.mit.edu	37	chrX	91066150	91066150	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctatcttttcagtgcatctAtttcatttaagtttaaactg	4	8	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91066150	T	T	91066150	1	4	80	0	1	0	0	0	0	0	0	0	11602	464	16	5		5	PCDH11X	23	91066150	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	10513428	91066150	64204410	407	85559											
IRS4	8471	broad.mit.edu	37	chrX	107976487	107976487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcactgtcagcaagagCcatggctggtgtcattgctg	13	9	2	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107976487	A	A	107976487	3	1	80	1	0	0	0	0	1	0	0	0	7912	739	26	3	689	3	IRS4	23	107976487	Missense_Mutation	SNP	C	TCGA-17-Z051-01A-01W-0747-08	16910337	107976487	47294073	408	85560											
IRS4	8471	broad.mit.edu	37	chrX	107978335	107978335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccctctgggcaggtgcaGtcttcctcgcctggagtggg	16	13	2	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107978335	T	T	107978335	3	4	80	1	0	0	0	0	1	0	0	0	7912	1020	36	3	2537	3	IRS4	23	107978335	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	1848	107978335	47292225	409	85561											
PGRMC1	10857	broad.mit.edu	37	chrX	118370574	118370574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagctgcggcgcttcgacgGcgtccaggacccgcgcatac	14	16	0	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118370574	T	T	118370574	3	4	80	1	0	0	0	0	1	0	0	0	11901	1203	42	3	250	3	PGRMC1	23	118370574	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	10392239	118370574	36899986	410	85562											
AKAP14	158798	broad.mit.edu	37	chrX	119037159	119037159	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacacacaggcacacagtaActtctttttttccccaggaa	5	13	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119037159	C	C	119037159	1	2	80	0	1	0	0	0	0	0	0	0	450	58	2	5		5	AKAP14	23	119037159	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	666585	119037159	36233401	411	85563											
ATP1B4	23439	broad.mit.edu	37	chrX	119500677	119500677	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcccaatgccaaagtctgGtgtcctttgcttttggtgtg	11	9	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119500677	C	C	119500677	1	2	80	0	1	0	0	0	0	0	0	0	1139	1276	44	4		4	ATP1B4	23	119500677	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	463518	119500677	35769883	412	85564											
LAMP2	3920	broad.mit.edu	37	chrX	119576232	119576232	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagtctaaaaatcagtcaTatccttaattattatctact	2	7	4	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119576232	C	C	119576232	1	2	80	0	1	0	0	0	0	0	0	0	8690	1421	49	5		5	LAMP2	23	119576232	Intron	SNP	T	TCGA-17-Z051-01A-01W-0747-08	75555	119576232	35694328	413	85565											
MCTS1	28985	broad.mit.edu	37	chrX	119744788	119744788	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcttaactagtaacatgatCattatttgacacccttccct	5	11	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119744788	A	A	119744788	1	1	80	0	1	0	0	0	0	0	0	0	9495	841	29	3		3	MCTS1	23	119744788	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	168556	119744788	35525772	414	85566											
XIAP	331	broad.mit.edu	37	chrX	123019558	123019558	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaaaacttgtgtacctgcaGacatcaataaggaagaagaa	8	7	1	3			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123019558	T	T	123019558	3	4	80	1	0	0	0	0	1	0	0	0	17555	942	33	3	48	3	XIAP	23	123019558	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3274770	123019558	32251002	415	85567											
ODZ1	10178	broad.mit.edu	37	chrX	123697634	123697634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagtgagctaaaagggagGggaaaagagtgatcaaatga	15	2	1	4			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123697634	T	T	123697634	1	4	80	0	1	0	0	0	0	0	0	0	10929	1247	43	2		2	ODZ1	23	123697634	Intron	SNP	G	TCGA-17-Z051-01A-01W-0747-08	678076	123697634	31572926	416	85568											
XPNPEP2	7512	broad.mit.edu	37	chrX	128902567	128902567	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcccctgctggcccattGcctagaaacctttgcattca	8	14	1	2			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128902567	T	T	128902567	1	4	80	0	1	0	0	0	0	0	0	0	17570	1334	46	3		3	XPNPEP2	23	128902567	3'UTR	SNP	G	TCGA-17-Z051-01A-01W-0747-08	5204933	128902567	26367993	417	85569											
SOX3	6658	broad.mit.edu	37	chrX	139586817	139586818	+	Missense_Mutation	DNP	CC	AA	AA													catgggccgtttcacacggtCctggtctgtacccccgccac							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	139586818	AA	AA	139586817	3	1	80	1	0	0	0	0	1	0	0	0	15065	855	30	3	935	3	SOX3	23	139586817	Missense_Mutation	DNP	CC	TCGA-17-Z051-01A-01W-0747-08	10684250	139586817	15683743	418	85570											
SLITRK4	139065	broad.mit.edu	37	chrX	142716995	142716995	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggtttcttgttgcgtcGcaggacaaaaacaagaaggc	13	7	1	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142716995	T	T	142716995	2	4	80	1	0	0	0	0	0	0	0	1	14859	1095	38	3		3	SLITRK4	23	142716995	Silent	SNP	G	TCGA-17-Z051-01A-01W-0747-08	3130178	142716995	12553565	419	85571											
SPANXN1	494118	broad.mit.edu	37	chrX	144337068	144337068	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctatgattcaaccttgttCttctctggcacacacccctt	4	16	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144337068	T	T	144337068	1	4	80	0	1	0	0	0	0	0	0	0	15106	928	32	4		4	SPANXN1	23	144337068	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	1620073	144337068	10933492	420	85572											
FMR1NB	158521	broad.mit.edu	37	chrX	147084864	147084864	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttcttgtttgatttttttCcccctctaatgttcttgttt	5	8	3	1			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147084864	A	A	147084864	1	1	80	0	1	0	0	0	0	0	0	0	6019	870	30	3		3	FMR1NB	23	147084864	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2747796	147084864	8185696	421	85573											
IDS	3423	broad.mit.edu	37	chrX	148579523	148579523	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacactagtgcccatcaggcAaccatggtgcctggcgatgg	13	12	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148579523	C	C	148579523	1	2	80	0	1	0	0	0	0	0	0	0	7573	145	5	5		5	IDS	23	148579523	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	1494659	148579523	6691037	422	85574											
PASD1	139135	broad.mit.edu	37	chrX	150840817	150840817	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagaagaagaagctgcagGagcagaggcggcaaaagaag	17	5	0	5			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150840817	T	T	150840817	4	4	80	1	0	0	0	0	0	1	0	0	11565	1175	41	3	1650	3	PASD1	23	150840817	Nonsense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	2261294	150840817	4429743	423	85575											
L1CAM	3897	broad.mit.edu	37	chrX	153130024	153130024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaccacgccccaaggcCccctttcacgcttacctccc	4	24	1	0			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153130024	A	A	153130024	1	1	80	0	1	0	0	0	0	0	0	0	8660	638	22	2		2	L1CAM	23	153130024	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	2289207	153130024	2140536	424	85576											
EMD	2010	broad.mit.edu	37	chrX	153609469	153609469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcgccaggtcccgctctGgggccagctgctgcttttcc	13	15	1	0	rs141732118		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153609469	T	T	153609469	3	4	80	1	0	0	0	0	1	0	0	0	5129	1357	47	2	699	2	EMD	23	153609469	Missense_Mutation	SNP	G	TCGA-17-Z051-01A-01W-0747-08	479445	153609469	1661091	425	85577											
CLIC2	1193	broad.mit.edu	37	chrX	154508243	154508243	+	Intron	SNP	C	A	A													aaaaaagaaaaaaaaagaaaCaagttttaatacttcccaga							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154508243	A	A	154508243	1	1	80	0	1	0	0	0	0	0	0	0	3558	493	17	3		3	CLIC2	23	154508243	Intron	SNP	C	TCGA-17-Z051-01A-01W-0747-08	898774	154508243	762317	426	85578	388	2									
CLIC2	1193	broad.mit.edu	37	chrX	154508244	154508244	+	Intron	SNP	A	C	C													aaaaagaaaaaaaaagaaacAagttttaatacttcccagaa							TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154508244	C	C	154508244	1	2	80	0	1	0	0	0	0	0	0	0	3558	145	5	5		5	CLIC2	23	154508244	Intron	SNP	A	TCGA-17-Z051-01A-01W-0747-08	1	154508244	762316	427	85579	388	2									
SSU72	29101	broad.mit.edu	37	chr1	1479315	1479315	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtggttgtcctggatgtcCacattgaccacgtgcacagg	12	11	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1479315	A	A	1479315	2	1	81	1	0	0	0	0	0	0	0	1	15320	581	21	2		2	SSU72	1	1479315	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08		1479315	247771306	1	85580											
PGD	5226	broad.mit.edu	37	chr1	10477108	10477108	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaattcaagctagcaaaaaGctgaagggtccccagaagtt	10	8	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10477108	C	C	10477108	3	2	81	1	0	0	0	0	1	0	0	0	11882	962	34	4	943	4	PGD	1	10477108	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	8997793	10477108	238773513	2	85581											
AADACL4	343066	broad.mit.edu	37	chr1	12726397	12726397	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccctgacaacatccccaAgaaatttaagaacagaggct	7	12	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12726397	T	T	12726397	3	4	81	1	0	0	0	0	1	0	0	0	13	72	3	5	889	5	AADACL4	1	12726397	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	2249289	12726397	236524224	3	85582											
CSMD2	114784	broad.mit.edu	37	chr1	34037204	34037204	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggatgaccctttggccagTatagtagtagccagggtcac	13	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34037204	C	C	34037204	3	2	81	1	0	0	0	0	1	0	0	0	3979	1638	57	5	2644	5	CSMD2	1	34037204	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	21310807	34037204	215213417	4	85583											
KIF2C	11004	broad.mit.edu	37	chr1	45205541	45205541	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttacgcggcgttaagacttCgtagggttagcgaaattgag	13	6	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45205541	T	T	45205541	1	4	81	0	1	0	0	0	0	0	0	0	8369	899	31	4		4	KIF2C	1	45205541	5'UTR	SNP	C	TCGA-17-Z052-01A-01W-0747-08	11168337	45205541	204045080	5	85584											
KIF2C	11004	broad.mit.edu	37	chr1	45226428	45226428	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggagacagagttgctttcCacagagacacttagtcctgt	11	9	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45226428	G	G	45226428	1	3	81	0	1	0	0	0	0	0	0	0	8369	609	21	4		4	KIF2C	1	45226428	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	20887	45226428	204024193	6	85585											
FAF1	11124	broad.mit.edu	37	chr1	51050411	51050411	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccaaatacttctccatcatCcaccccaaattctgtagcat	3	15	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51050411	G	G	51050411	3	3	81	1	0	0	0	0	1	0	0	0	5415	855	30	4	1079	4	FAF1	1	51050411	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	5823983	51050411	198200210	7	85586											
EFCAB7	84455	broad.mit.edu	37	chr1	63991278	63991278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgaagcgatgcaactttctCcagtcagaaatcaacacctt	6	12	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63991278	A	A	63991278	3	1	81	1	0	0	0	0	1	0	0	0	4980	855	30	3	37	3	EFCAB7	1	63991278	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	12940867	63991278	185259343	8	85587											
FNDC7	163479	broad.mit.edu	37	chr1	109275800	109275800	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcctgttacttagactagtTtgcttatattttttccctgc	5	9	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109275800	A	A	109275800	1	1	81	0	1	0	0	0	0	0	0	0	6031	1856	64	5		5	FNDC7	1	109275800	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	45284522	109275800	139974821	9	85588											
KIAA1324	57535	broad.mit.edu	37	chr1	109742329	109742329	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagatcaaaacctgtgttAaggactagttggaaggatcc	11	7	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109742329	G	G	109742329	1	3	81	0	1	0	0	0	0	0	0	0	8293	377	13	5		5	KIAA1324	1	109742329	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	466529	109742329	139508292	10	85589											
PTPN22	26191	broad.mit.edu	37	chr1	114380188	114380188	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaaatctaaaattctaTgcaaactttaaaaaataact	2	5	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114380188	C	C	114380188	1	2	81	0	1	0	0	0	0	0	0	0	12895	1479	51	5		5	PTPN22	1	114380188	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	4637859	114380188	134870433	11	85590											
CD101	9398	broad.mit.edu	37	chr1	117544516	117544516	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctttatgtttctcttgtcAcaggagttcatcaactcagg	7	10	5	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117544516	T	T	117544516	1	4	81	0	1	0	0	0	0	0	0	0	2992	174	6	5		5	CD101	1	117544516	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	3164328	117544516	131706105	12	85591											
FLG2	388698	broad.mit.edu	37	chr1	152327663	152327663	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccaaagccagatgtctGtcccgaacttgacccatgtt	8	12	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152327663	C	C	152327663	3	2	81	1	0	0	0	0	1	0	0	0	5980	1386	48	4	4580	4	FLG2	1	152327663	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	34783147	152327663	96922958	13	85592											
NPR1	4881	broad.mit.edu	37	chr1	153659682	153659682	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcacatttccagggcatgCtgtttctacacaatggggct	9	11	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153659682	T	T	153659682	2	4	81	1	0	0	0	0	0	0	0	1	10689	796	28	4		4	NPR1	1	153659682	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1332019	153659682	95590939	14	85593											
FCRL3	115352	broad.mit.edu	37	chr1	157666025	157666025	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacagtccctgaaccctGggctactgagcaaataagga	11	10	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157666025	A	A	157666025	4	1	81	1	0	0	0	0	0	1	0	0	5853	1357	47	4	1303	4	FCRL3	1	157666025	Nonsense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	4006343	157666025	91584596	15	85594											
CD1C	911	broad.mit.edu	37	chr1	158261806	158261806	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcacttcctgatacagccCtaggtttttatactgttgtt	6	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158261806	G	G	158261806	1	3	81	0	1	0	0	0	0	0	0	0	3006	696	24	4		4	CD1C	1	158261806	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	595781	158261806	90988815	16	85595											
SPTA1	6708	broad.mit.edu	37	chr1	158583600	158583601	+	Missense_Mutation	DNP	CA	TG	TG													aagtagtaattgagtcctctCaggcaggaccggaactcttt							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	158583601	TG	TG	158583600	3	4	81	1	0	0	0	0	1	0	0	0	15234	813	29	4	371	4	SPTA1	1	158583600	Missense_Mutation	DNP	CA	TCGA-17-Z052-01A-01W-0747-08	321794	158583600	90667021	17	85596											
SPTA1	6708	broad.mit.edu	37	chr1	158630970	158630970	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagcattaagtgggaaaaTgagtcagatatttttaaatt	9	2	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158630970	A	A	158630970	1	1	81	0	1	0	0	0	0	0	0	0	15234	1479	51	5		5	SPTA1	1	158630970	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	47370	158630970	90619651	18	85597											
MNDA	4332	broad.mit.edu	37	chr1	158815774	158815774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggaacaatggtgtatgGgttgtttatgttacaaaagg	12	3	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158815774	T	T	158815774	3	4	81	1	0	0	0	0	1	0	0	0	9770	1232	43	2	982	2	MNDA	1	158815774	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	184804	158815774	90434847	19	85598											
PYHIN1	149628	broad.mit.edu	37	chr1	158912098	158912098	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttgaggttccaaaggacaTcatcagaagagcaaagaaaa	10	6	2	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158912098	G	G	158912098	3	3	81	1	0	0	0	0	1	0	0	0	12973	1435	50	5	925	5	PYHIN1	1	158912098	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	96324	158912098	90338523	20	85599											
APCS	325	broad.mit.edu	37	chr1	159558117	159558117	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtctatacattggaagacaCaaagttacatccaaagttat	6	7	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159558117	G	G	159558117	3	3	81	1	0	0	0	0	1	0	0	0	769	477	17	4	297	4	APCS	1	159558117	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	646019	159558117	89692504	21	85600											
ATP1A4	480	broad.mit.edu	37	chr1	160146195	160146195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcgtcaagacagaatGgtagagcttgaattactgct	12	7	1	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160146195	T	T	160146195	1	4	81	0	1	0	0	0	0	0	0	0	1135	1363	47	2		2	ATP1A4	1	160146195	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	588078	160146195	89104426	22	85601											
LY9	4063	broad.mit.edu	37	chr1	160786665	160786665	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgttcaggtttctctccaTctctatttactcaggtcaca	5	12	6	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160786665	A	A	160786665	1	1	81	0	1	0	0	0	0	0	0	0	9189	1450	50	5		5	LY9	1	160786665	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	640470	160786665	88463956	23	85602											
RCSD1	92241	broad.mit.edu	37	chr1	167666491	167666491	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgaagtgttgccatccaaGagcaaggccccaggatcccc	11	13	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167666491	T	T	167666491	3	4	81	1	0	0	0	0	1	0	0	0	13293	933	33	3	652	3	RCSD1	1	167666491	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6879826	167666491	81584130	24	85603											
MYOC	4653	broad.mit.edu	37	chr1	171607601	171607601	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagagttctgttcctcttctCctcccctccctctgctccca	5	19	4	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171607601	T	T	171607601	1	4	81	0	1	0	0	0	0	0	0	0	10180	870	30	4		4	MYOC	1	171607601	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	3941110	171607601	77643020	25	85604											
TNR	7143	broad.mit.edu	37	chr1	175360345	175360345	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctagcacctctgttgtctctCcactccttgggcaattctgt	7	14	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175360345	G	G	175360345	1	3	81	0	1	0	0	0	0	0	0	0	16461	870	30	4		4	TNR	1	175360345	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	3752744	175360345	73890276	26	85605											
PAPPA2	60676	broad.mit.edu	37	chr1	176525752	176525752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggacgcagcaaaccagaCactgaaggaaatgctgtgag	12	9	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176525752	A	A	176525752	3	1	81	1	0	0	0	0	1	0	0	0	11527	477	17	3	296	3	PAPPA2	1	176525752	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1165407	176525752	72724869	27	85606											
ASTN1	460	broad.mit.edu	37	chr1	177001736	177001736	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgtcatactcatagcCgtccaggataggtgtctccc	10	11	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001736	T	T	177001736	3	4	81	1	0	0	0	0	1	0	0	0	1068	652	23	4	3251	4	ASTN1	1	177001736	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	475984	177001736	72248885	28	85607											
ABL2	27	broad.mit.edu	37	chr1	179079365	179079365	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcctcacaccccatgctTctttaaacaaggcagtttct	5	13	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179079365	C	C	179079365	1	2	81	0	1	0	0	0	0	0	0	0	93	1798	62	5		5	ABL2	1	179079365	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	2077629	179079365	70171256	29	85608											
KIF21B	23046	broad.mit.edu	37	chr1	200960257	200960257	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcagacatgggcttggcCaggcgcctcagtgcagaaac	13	13	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200960257	A	A	200960257	2	1	81	1	0	0	0	0	0	0	0	1	8359	581	21	2		2	KIF21B	1	200960257	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	21880892	200960257	48290364	30	85609											
NAV1	89796	broad.mit.edu	37	chr1	201757829	201757829	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgggtcccctcacccaccAcctccactcccaccactcct	4	24	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201757829	C	C	201757829	1	2	81	0	1	0	0	0	0	0	0	0	10277	174	6	5		5	NAV1	1	201757829	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	797572	201757829	47492792	31	85610											
NFASC	23114	broad.mit.edu	37	chr1	204939793	204939793	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccttattctggctcctggCgaggatgggagactggtgtg	15	8	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204939793	T	T	204939793	2	4	81	1	0	0	0	0	0	0	0	1	10454	755	27	4		4	NFASC	1	204939793	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	3181964	204939793	44310828	32	85611											
LEMD1	93273	broad.mit.edu	37	chr1	205389589	205389589	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactgtacatacgtagtaTtgggccaggtgaaaatccaa	9	8	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205389589	C	C	205389589	3	2	81	1	0	0	0	0	1	0	0	0	8791	1493	52	5	262	5	LEMD1	1	205389589	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	449796	205389589	43861032	33	85612											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209955490	209955490	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataaagacaacctgatgatCtgaataatttgtgacaactg	7	6	1	5			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209955490	A	A	209955490	2	1	81	1	0	0	0	0	0	0	0	1	16566	903	32	3		3	TRAF3IP3	1	209955490	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	4565901	209955490	39295131	34	85613											
SLC30A10	55532	broad.mit.edu	37	chr1	220101687	220101687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcagcgcgatggagttGcccaggtagccggagaccag	17	10	0	2	rs138123249		TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220101687	T	T	220101687	2	4	81	1	0	0	0	0	0	0	0	1	14668	1306	46	3		3	SLC30A10	1	220101687	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	10146197	220101687	29148934	35	85614											
TRIM17	51127	broad.mit.edu	37	chr1	228596269	228596269	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtccccggtgatgttcatgCccacctcccagtagtgcctc	9	17	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228596269	T	T	228596269	3	4	81	1	0	0	0	0	1	0	0	0	16617	739	26	4	370	4	TRIM17	1	228596269	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	8494582	228596269	20654352	36	85615											
FAM89A	375061	broad.mit.edu	37	chr1	231155539	231155539	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaggtgctttcttgcaagaGaagcagcaaatgatgacagc	13	7	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231155539	T	T	231155539	1	4	81	0	1	0	0	0	0	0	0	0	5700	957	33	3		3	FAM89A	1	231155539	3'UTR	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2559270	231155539	18095082	37	85616											
RYR2	6262	broad.mit.edu	37	chr1	237774219	237774219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtctcgaataagtgaacGccaaggctggttggtgcagt	14	7	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237774219	T	T	237774219	3	4	81	1	0	0	0	0	1	0	0	0	13880	1087	38	3	4983	3	RYR2	1	237774219	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6618680	237774219	11476402	38	85617											
FMN2	56776	broad.mit.edu	37	chr1	240308187	240308187	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actccttagccacttctcctGccaggtgcctgatatactca	6	15	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240308187	A	A	240308187	1	1	81	0	1	0	0	0	0	0	0	0	6008	1334	46	4		4	FMN2	1	240308187	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2533968	240308187	8942434	39	85618											
CNST	163882	broad.mit.edu	37	chr1	246785020	246785020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaatgctgtcttggctgGgcgcagtggctcatgcctgt	13	10	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246785020	T	T	246785020	1	4	81	0	1	0	0	0	0	0	0	0	3666	1247	43	2		2	CNST	1	246785020	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6476833	246785020	2465601	40	85619											
ZNF669	79862	broad.mit.edu	37	chr1	247263803	247263803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgagtgtaggctttaccgCatttcttacattcatagggt	9	8	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247263803	A	A	247263803	3	1	81	1	0	0	0	0	1	0	0	0	18203	710	25	3	130	3	ZNF669	1	247263803	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	478783	247263803	1986818	41	85620											
OR2G2	81470	broad.mit.edu	37	chr1	247752435	247752435	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accatcttttatggaaccatCatcttcatgtatctgcagcc	5	12	5	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247752435	A	A	247752435	2	1	81	1	0	0	0	0	0	0	0	1	11092	816	29	3		3	OR2G2	1	247752435	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	488632	247752435	1498186	42	85621											
OR2L3	391192	broad.mit.edu	37	chr1	248224651	248224651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatggccgggttctccttgCtgtctaccacatgaaatctg	9	12	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224651	A	A	248224651	3	1	81	1	0	0	0	0	1	0	0	0	11102	797	28	3	670	3	OR2L3	1	248224651	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	472216	248224651	1025970	43	85622											
OR2M2	391194	broad.mit.edu	37	chr1	248343878	248343878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacatcaatatttgaagaGgttattttcatctgctgtat	7	6	3	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343878	T	T	248343878	3	4	81	1	0	0	0	0	1	0	0	0	11104	991	35	2	593	2	OR2M2	1	248343878	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	119227	248343878	906743	44	85623											
OR2T4	127074	broad.mit.edu	37	chr1	248524934	248524934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatggtcggatttcatcCtgatgggactcttcagacaa	11	9	3	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248524934	A	A	248524934	3	1	81	1	0	0	0	0	1	0	0	0	11121	680	24	2	54	2	OR2T4	1	248524934	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	181056	248524934	725687	45	85624											
OR14I1	401994	broad.mit.edu	37	chr1	248845405	248845405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgagatgtagcacagatcCaaaacggagaggttcttcag	11	8	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248845405	A	A	248845405	3	1	81	1	0	0	0	0	1	0	0	0	11041	593	21	2	738	2	OR14I1	1	248845405	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	320471	248845405	405216	46	85625											
APOB	338	broad.mit.edu	37	chr2	21239330	21239330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttaggtggcccatgagggCgacctcagtaattttcttgt	11	10	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21239330	A	A	21239330	3	1	81	1	0	0	0	0	1	0	0	0	787	768	27	3	10414	3	APOB	2	21239330	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08		21239330	221960043	47	85626											
GALNT14	79623	broad.mit.edu	37	chr2	31168704	31168704	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgtccaggttaatgatAtcgatcacagggcacaccac	10	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31168704	T	T	31168704	3	4	81	1	0	0	0	0	1	0	0	0	6274	446	16	5	1007	5	GALNT14	2	31168704	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	9929374	31168704	212030669	48	85627											
ABCG8	64241	broad.mit.edu	37	chr2	44079539	44079539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttaggcagtgcgctgacaCccgcgtgggcaacatgtacg	14	12	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44079539	A	A	44079539	3	1	81	1	0	0	0	0	1	0	0	0	72	507	18	3	626	3	ABCG8	2	44079539	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	12910835	44079539	199119834	49	85628											
ABCG8	64241	broad.mit.edu	37	chr2	44101148	44101148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtggcccactggcatgGgcaggcaggacctcagccac	15	13	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44101148	T	T	44101148	1	4	81	0	1	0	0	0	0	0	0	0	72	1247	43	2		2	ABCG8	2	44101148	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	21609	44101148	199098225	50	85629											
CCDC88A	55704	broad.mit.edu	37	chr2	55646093	55646093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacgacatgaacgcccacCtccatctctgcagccacaaa	5	18	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55646093	A	A	55646093	1	1	81	0	1	0	0	0	0	0	0	0	2891	696	24	2		2	CCDC88A	2	55646093	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	11544945	55646093	187553280	51	85630											
SMYD1	150572	broad.mit.edu	37	chr2	88405918	88405918	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accaacatctacatgctgcgGatgctgagcattgtttcgga	10	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88405918	T	T	88405918	2	4	81	1	0	0	0	0	0	0	0	1	14935	1161	41	3		3	SMYD1	2	88405918	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	32759825	88405918	154793455	52	85631											
NPAS2	4862	broad.mit.edu	37	chr2	101604482	101604482	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagggaatgcaaaggaggTgcacactggtgaggtaccca	14	9	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101604482	G	G	101604482	1	3	81	0	1	0	0	0	0	0	0	0	10658	1711	59	5		5	NPAS2	2	101604482	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	13198564	101604482	141594891	53	85632											
WDR33	55339	broad.mit.edu	37	chr2	128476971	128476971	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtccggggggtccttgcatGccaccctggggtggaggtcc	18	12	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128476971	A	A	128476971	2	1	81	1	0	0	0	0	0	0	0	1	17414	1306	46	4		4	WDR33	2	128476971	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	26872489	128476971	114722402	54	85633											
PTPN18	26469	broad.mit.edu	37	chr2	131117307	131117307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgaccccaggacccgaGggtccagctcttggagtgac	12	14	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131117307	T	T	131117307	1	4	81	0	1	0	0	0	0	0	0	0	12890	1015	35	2		2	PTPN18	2	131117307	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2640336	131117307	112082066	55	85634											
MGAT5	4249	broad.mit.edu	37	chr2	135170360	135170360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgggccacagaatcgccGcctgcaagctaggaatgccc	12	13	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135170360	T	T	135170360	1	4	81	0	1	0	0	0	0	0	0	0	9641	1102	38	3		3	MGAT5	2	135170360	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	4053053	135170360	108029013	56	85635											
LRP1B	53353	broad.mit.edu	37	chr2	141665672	141665672	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacagaaatagtgtcagTttgatttttgtgattaggtc	10	3	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141665672	C	C	141665672	1	2	81	0	1	0	0	0	0	0	0	0	9042	1740	60	5		5	LRP1B	2	141665672	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	6495312	141665672	101533701	57	85636											
KCNJ3	3760	broad.mit.edu	37	chr2	155566147	155566147	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagggtgagttccttccCcttgaccaacttgaactgga	10	12	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155566147	A	A	155566147	2	1	81	1	0	0	0	0	0	0	0	1	8122	610	22	2		2	KCNJ3	2	155566147	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	13900475	155566147	87633226	58	85637											
IFIH1	64135	broad.mit.edu	37	chr2	163133379	163133379	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctagtatattgctccattaTggtatttcttaatttggtca	6	7	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163133379	C	C	163133379	3	2	81	1	0	0	0	0	1	0	0	0	7590	1464	51	5	979	5	IFIH1	2	163133379	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	7567232	163133379	80065994	59	85638											
XIRP2	129446	broad.mit.edu	37	chr2	168114455	168114455	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaggaaattatgatgaaGgttttggacataagcagcat	10	5	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168114455	T	T	168114455	1	4	81	0	1	0	0	0	0	0	0	0	17557	1000	35	2		2	XIRP2	2	168114455	3'UTR	SNP	G	TCGA-17-Z052-01A-01W-0747-08	4981076	168114455	75084918	60	85639											
LRP2	4036	broad.mit.edu	37	chr2	170103121	170103121	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaattctaaaagatatttttCccatataaatagcccaagct	3	8	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170103121	A	A	170103121	1	1	81	0	1	0	0	0	0	0	0	0	9043	870	30	3		3	LRP2	2	170103121	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1988666	170103121	73096252	61	85640											
COL3A1	1281	broad.mit.edu	37	chr2	189872733	189872733	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catttcagaaagatattctgGcattgtgatgtcatgatact	8	6	3	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189872733	C	C	189872733	1	2	81	0	1	0	0	0	0	0	0	0	3720	1218	42	4		4	COL3A1	2	189872733	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	19769612	189872733	53326640	62	85641											
CCDC108	255101	broad.mit.edu	37	chr2	219903754	219903754	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttctccaccagtctacaaCcggttaaggtaaacatcact	5	12	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219903754	G	G	219903754	3	3	81	1	0	0	0	0	1	0	0	0	2769	507	18	4	6040	4	CCDC108	2	219903754	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	30031021	219903754	23295619	63	85642											
OBSL1	23363	broad.mit.edu	37	chr2	220421165	220421165	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagagtatctcatcctcatCaggacctaacctcgaacatg	6	13	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220421165	A	A	220421165	1	1	81	0	1	0	0	0	0	0	0	0	10908	841	29	3		3	OBSL1	2	220421165	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	517411	220421165	22778208	64	85643											
SAG	6295	broad.mit.edu	37	chr2	234238264	234238264	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagagggcatagtcttctaGaatttctgatcctgtttcct	9	8	3	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234238264	C	C	234238264	1	2	81	0	1	0	0	0	0	0	0	0	13919	957	33	4		4	SAG	2	234238264	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	13817099	234238264	8961109	65	85644											
SLC6A11	6538	broad.mit.edu	37	chr3	10861183	10861183	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctacgtggtgttttttaTttgctgtggaattcctgttt	9	7	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10861183	C	C	10861183	3	2	81	1	0	0	0	0	1	0	0	0	14788	1493	52	5	296	5	SLC6A11	3	10861183	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08		10861183	187161247	66	85645											
SYN2	6854	broad.mit.edu	37	chr3	12199023	12199023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaccttcagcagctggtGggggcaatacacctgaggtc	15	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12199023	A	A	12199023	1	1	81	0	1	0	0	0	0	0	0	0	15560	1363	47	4		4	SYN2	3	12199023	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1337840	12199023	185823407	67	85646											
TMEM43	79188	broad.mit.edu	37	chr3	14174425	14174425	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgaccgagagattggccacAaaaaccccaggtgagagcca	11	12	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14174425	G	G	14174425	3	3	81	1	0	0	0	0	1	0	0	0	16290	131	5	5	524	5	TMEM43	3	14174425	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	1975402	14174425	183848005	68	85647											
ANO10	55129	broad.mit.edu	37	chr3	43641905	43641905	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgaagttctgtctggttCtgtatgtgaaggctctcatg	11	7	4	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43641905	T	T	43641905	3	4	81	1	0	0	0	0	1	0	0	0	696	913	32	4	1718	4	ANO10	3	43641905	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	29467480	43641905	154380525	69	85648											
ZNF502	91392	broad.mit.edu	37	chr3	44762440	44762440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagggatagtagtaaagaGgttccaagaggatgaatacc	12	5	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44762440	T	T	44762440	3	4	81	1	0	0	0	0	1	0	0	0	18077	1000	35	2	137	2	ZNF502	3	44762440	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1120535	44762440	153259990	70	85649											
CAMP	820	broad.mit.edu	37	chr3	48266121	48266121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtgtatggggacagtgaCcctcaaccaggccaggggct	16	11	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48266121	A	A	48266121	3	1	81	1	0	0	0	0	1	0	0	0	2636	507	18	3	348	3	CAMP	3	48266121	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	3503681	48266121	149756309	71	85650											
SHQ1	55164	broad.mit.edu	37	chr3	72799500	72799500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtttacagcagtggtgcCcttgggttcagaaacctgaa	13	9	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72799500	A	A	72799500	3	1	81	1	0	0	0	0	1	0	0	0	14405	623	22	2	68	2	SHQ1	3	72799500	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	24533379	72799500	125222930	72	85651											
MYH15	22989	broad.mit.edu	37	chr3	108174815	108174815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagatttttatctctgttaCtaatatgttcaattttcaca	3	6	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108174815	A	A	108174815	1	1	81	0	1	0	0	0	0	0	0	0	10128	580	20	3		3	MYH15	3	108174815	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	35375315	108174815	89847615	73	85652											
SEMA5B	54437	broad.mit.edu	37	chr3	122646700	122646700	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccactgcccaggctgcggtAgatggcagggtcccgacctg	14	15	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122646700	G	G	122646700	3	3	81	1	0	0	0	0	1	0	0	0	14151	420	15	5	2732	5	SEMA5B	3	122646700	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	14471885	122646700	75375730	74	85653											
PIK3R4	30849	broad.mit.edu	37	chr3	130398376	130398376	+	Intron	DEL	C	-	-													ccagaggttaaaagtctgtaCcacatttttcctctcgtcag							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130398376	-	-	130398376	6	5	81	0	1	1	0	1	0	0	0	0	12016	522	18	0		0	PIK3R4	3	130398376	Intron	DEL	C	TCGA-17-Z052-01A-01W-0747-08	7751676	130398376	67624054	75	85654											
ZIC4	84107	broad.mit.edu	37	chr3	147114209	147114209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcccgggaacaccgaggGgctggaggcggcggtgagct	21	10	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147114209	T	T	147114209	3	4	81	1	0	0	0	0	1	0	0	0	17807	1232	43	2	898	2	ZIC4	3	147114209	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	16715833	147114209	50908221	76	85655											
ZIC1	7545	broad.mit.edu	37	chr3	147128649	147128649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactttcagcaccatgcaCgagctagttacgcacgtcac	7	13	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147128649	A	A	147128649	3	1	81	1	0	0	0	0	1	0	0	0	17804	535	19	3	752	3	ZIC1	3	147128649	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	14440	147128649	50893781	77	85656											
COMMD2	51122	broad.mit.edu	37	chr3	149468638	149468639	+	Splice_Site	DNP	TC	CA	CA													ttggaaatccagttcagaaaTctaagtgaattgagtttaaa							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	149468639	CA	CA	149468638	5	2	81	1	0	0	0	0	0	0	1	0	3748	1449	50	5	378	5	COMMD2	3	149468638	Splice_Site	DNP	TC	TCGA-17-Z052-01A-01W-0747-08	2339989	149468638	48553792	78	85657											
WHSC1	7468	broad.mit.edu	37	chr4	1953700	1953700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccagacgtttgcccatGcatgttattatatatccttg	9	9	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1953700	T	T	1953700	1	4	81	0	1	0	0	0	0	0	0	0	17489	1334	46	3		3	WHSC1	4	1953700	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08		1953700	189200576	79	85658											
HTT	3064	broad.mit.edu	37	chr4	3211515	3211515	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaagtccccttgaacgcCgcccatcatgttccccttat	7	15	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3211515	T	T	3211515	1	4	81	0	1	0	0	0	0	0	0	0	7527	667	23	4		4	HTT	4	3211515	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1257815	3211515	187942761	80	85659											
BST1	683	broad.mit.edu	37	chr4	15713415	15713415	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggaataaaatgtgtttgtCtacttaccccttaggactcg	8	8	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15713415	A	A	15713415	1	1	81	0	1	0	0	0	0	0	0	0	1542	928	32	3		3	BST1	4	15713415	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	12501900	15713415	175440861	81	85660											
GPR125	166647	broad.mit.edu	37	chr4	22394315	22394315	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgaagaattatcccaaccTacaaggaagatcaaagaata	7	7	1	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22394315	A	A	22394315	5	1	81	1	0	0	0	0	0	0	1	0	6704	1536	53	5	1497	5	GPR125	4	22394315	Splice_Site	SNP	T	TCGA-17-Z052-01A-01W-0747-08	6680900	22394315	168759961	82	85661											
KIAA1211	57482	broad.mit.edu	37	chr4	57194466	57194466	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaagaacacccattctcCtgaatgcagtgagtaattgg	9	9	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57194466	A	A	57194466	1	1	81	0	1	0	0	0	0	0	0	0	8285	696	24	2		2	KIAA1211	4	57194466	3'UTR	SNP	C	TCGA-17-Z052-01A-01W-0747-08	34800151	57194466	133959810	83	85662											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68919793	68919793	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccagaatctccctgaaatAaaaacatattttaaattgtt	3	8	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68919793	T	T	68919793	1	4	81	0	1	0	0	0	0	0	0	0	16366	377	13	5		5	TMPRSS11F	4	68919793	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	11725327	68919793	122234483	84	85663											
SULT1B1	27284	broad.mit.edu	37	chr4	70599998	70599998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatctgcagtggggggtgGgggtaggagaaaaaaataag	17	3	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70599998	T	T	70599998	1	4	81	0	1	0	0	0	0	0	0	0	15494	1247	43	2		2	SULT1B1	4	70599998	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1680205	70599998	120554278	85	85664											
PRDM8	56978	broad.mit.edu	37	chr4	81123007	81123007	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgatgctgagtaatcatgtGgtgtgcgtgtgtgtgtgtgt	17	4	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81123007	A	A	81123007	1	1	81	0	1	0	0	0	0	0	0	0	12568	1363	47	4		4	PRDM8	4	81123007	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	10523009	81123007	110031269	86	85665											
HERC6	55008	broad.mit.edu	37	chr4	89326124	89326124	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatagcagtgaaaagaagaAgtactgaacatgaaatggct	12	4	0	5			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89326124	G	G	89326124	3	3	81	1	0	0	0	0	1	0	0	0	7129	72	3	5	1020	5	HERC6	4	89326124	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	8203117	89326124	101828152	87	85666											
INPP4B	8821	broad.mit.edu	37	chr4	143067124	143067124	+	Frame_Shift_Del	DEL	T	-	-													caataatgcagttcaggctcTtccccacattggcccacacc							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143067124	-	-	143067124	7	5	81	1	0	1	0	1	0	0	0	0	7823	1609	56	0	1221	0	INPP4B	4	143067124	Frame_Shift_Del	DEL	T	TCGA-17-Z052-01A-01W-0747-08	53741000	143067124	48087152	88	85667											
MMAA	166785	broad.mit.edu	37	chr4	146575074	146575074	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttaatgaaatgtatgactTtcaaaatctgagcattgact	7	5	2	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146575074	C	C	146575074	1	2	81	0	1	0	0	0	0	0	0	0	9732	1856	64	5		5	MMAA	4	146575074	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	3507950	146575074	44579202	89	85668											
NPY2R	4887	broad.mit.edu	37	chr4	156135901	156135901	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaaccaccaaaatgctGgtgtgtgtggtggtggtgtt	13	6	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156135901	C	C	156135901	2	2	81	1	0	0	0	0	0	0	0	1	10704	1335	47	4		4	NPY2R	4	156135901	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	9560827	156135901	35018375	90	85669											
GUCY1B3	2983	broad.mit.edu	37	chr4	156721098	156721098	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccctctgcatgatgccacGcgcgatcttgttcttttggg	10	12	3	1	rs17854507	byFrequency;by1000genomes	TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156721098	T	T	156721098	2	4	81	1	0	0	0	0	0	0	0	1	6960	1074	38	3		3	GUCY1B3	4	156721098	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	585197	156721098	34433178	91	85670											
MTRR	4552	broad.mit.edu	37	chr5	7900157	7900157	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaaaaacgctaccttcagGatatttggtcataaaaccag	7	8	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7900157	A	A	7900157	3	1	81	1	0	0	0	0	1	0	0	0	10055	1174	41	4	2222	4	MTRR	5	7900157	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08		7900157	173015103	92	85671											
DNAH5	1767	broad.mit.edu	37	chr5	13727729	13727729	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctccgggttttccttatCaaaccaaattttccacattt	3	13	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13727729	A	A	13727729	3	1	81	1	0	0	0	0	1	0	0	0	4644	826	29	3	1994	3	DNAH5	5	13727729	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	5827572	13727729	167187531	93	85672											
DNAH5	1767	broad.mit.edu	37	chr5	13883211	13883211	+	Intron	DEL	A	-	-													gcactgttactgtctgagttAacccaaaacaaggaagaatt							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13883211	-	-	13883211	6	5	81	0	1	1	0	1	0	0	0	0	4644	377	13	0		0	DNAH5	5	13883211	Intron	DEL	A	TCGA-17-Z052-01A-01W-0747-08	155482	13883211	167032049	94	85673											
FBXL7	23194	broad.mit.edu	37	chr5	15937147	15937147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgcgagagcatcaccgGccagggcttgcagatcgtgg	15	12	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15937147	T	T	15937147	3	4	81	1	0	0	0	0	1	0	0	0	5781	1203	42	3	1342	3	FBXL7	5	15937147	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2053936	15937147	164978113	95	85674											
MYO10	4651	broad.mit.edu	37	chr5	16681451	16681451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcttctcatctggggggaCgacagagcagaggctgttga	14	8	3	3	rs142263783	by1000genomes	TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16681451	A	A	16681451	3	1	81	1	0	0	0	0	1	0	0	0	10156	536	19	3	1865	3	MYO10	5	16681451	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	744304	16681451	164233809	96	85675											
SLC45A2	51151	broad.mit.edu	37	chr5	33944770	33944770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctaatccacatatctaaCaaagagagcgacaaagcaac	6	11	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33944770	A	A	33944770	3	1	81	1	0	0	0	0	1	0	0	0	14755	478	17	3	20	3	SLC45A2	5	33944770	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	17263319	33944770	146970490	97	85676											
SLC45A2	51151	broad.mit.edu	37	chr5	33947260	33947260	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggcagaggttcaatgaCagcacacctccttttcttcc	7	14	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33947260	G	G	33947260	1	3	81	0	1	0	0	0	0	0	0	0	14755	478	17	4		4	SLC45A2	5	33947260	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2490	33947260	146968000	98	85677											
CARD6	84674	broad.mit.edu	37	chr5	40854580	40854580	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagagatctataaagcatatCctttacccaggccattccta	5	12	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40854580	G	G	40854580	1	3	81	0	1	0	0	0	0	0	0	0	2676	870	30	4		4	CARD6	5	40854580	3'UTR	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6907320	40854580	140060680	99	85678											
KCNN2	3781	broad.mit.edu	37	chr5	113740549	113740549	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catggactgtccgagcttgtGaaaggtaagtttgtttcttt	11	6	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113740549	A	A	113740549	3	1	81	1	0	0	0	0	1	0	0	0	8149	1291	45	4	1007	4	KCNN2	5	113740549	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	72885969	113740549	67174711	100	85679											
AQPEP	206338	broad.mit.edu	37	chr5	115335601	115335601	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catatttacttacagcaaggTaaaagcagttagaaatttcc	6	7	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115335601	A	A	115335601	5	1	81	1	0	0	0	0	0	0	1	0	836	1652	57	5	1543	5	AQPEP	5	115335601	Splice_Site	SNP	T	TCGA-17-Z052-01A-01W-0747-08	1595052	115335601	65579659	101	85680											
MEGF10	84466	broad.mit.edu	37	chr5	126755681	126755681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggtttggaaaggctcaaCaaggctctctgctgcctttg	12	10	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126755681	A	A	126755681	1	1	81	0	1	0	0	0	0	0	0	0	9553	493	17	3		3	MEGF10	5	126755681	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	11420080	126755681	54159579	102	85681											
FBN2	2201	broad.mit.edu	37	chr5	127624828	127624828	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacactcacccacacagcGtactccagtgtagtcaaggt	7	15	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127624828	A	A	127624828	3	1	81	1	0	0	0	0	1	0	0	0	5760	1145	40	4	2166	4	FBN2	5	127624828	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	869147	127624828	53290432	103	85682											
TGFBI	7045	broad.mit.edu	37	chr5	135383035	135383035	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acggggtggtgcacctcatcGataaggtcatctccaccatc	10	13	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135383035	A	A	135383035	3	1	81	1	0	0	0	0	1	0	0	0	15943	1058	37	4	719	4	TGFBI	5	135383035	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	7758207	135383035	45532225	104	85683											
SMAD5	4090	broad.mit.edu	37	chr5	135510103	135510103	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggtggagaggtgtatgcgGaatgcctcagtgacagcagc	16	7	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135510103	T	T	135510103	4	4	81	1	0	0	0	0	0	1	0	0	14875	1175	41	3	1054	3	SMAD5	5	135510103	Nonsense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	127068	135510103	45405157	105	85684											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139917753	139917753	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacccaagcacattctcccaAcatcagccaatggagagaga	8	13	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139917753	C	C	139917753	3	2	81	1	0	0	0	0	1	0	0	0	629	40	2	5	7437	5	ANKHD1-EIF4EBP3	5	139917753	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	4407650	139917753	40997507	106	85685											
PCDHA3	56145	broad.mit.edu	37	chr5	140181958	140181958	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgctcgctgacgccccaCgtccccttcaagctggtgtc	9	18	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140181958	G	G	140181958	3	3	81	1	0	0	0	0	1	0	0	0	11619	535	19	4	1178	4	PCDHA3	5	140181958	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	264205	140181958	40733302	107	85686											
PCDHA7	56141	broad.mit.edu	37	chr5	140215067	140215067	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaggacgcccaaccaggtAccgtcatcacattgattagc	9	13	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140215067	G	G	140215067	3	3	81	1	0	0	0	0	1	0	0	0	11623	391	14	5	1101	5	PCDHA7	5	140215067	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	33109	140215067	40700193	108	85687											
PCDHB3	56132	broad.mit.edu	37	chr5	140481287	140481287	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggaactgaccttgtcttcaGtaaacagccctattcctgag	8	12	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140481287	C	C	140481287	3	2	81	1	0	0	0	0	1	0	0	0	11637	1029	36	4	1056	4	PCDHB3	5	140481287	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	266220	140481287	40433973	109	85688											
PCDHB12	56124	broad.mit.edu	37	chr5	140589053	140589053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagacaataggaaatacCctgagttagttctggacaag	9	8	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140589053	A	A	140589053	3	1	81	1	0	0	0	0	1	0	0	0	11631	623	22	2	576	2	PCDHB12	5	140589053	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	107766	140589053	40326207	110	85689											
DIAPH1	1729	broad.mit.edu	37	chr5	140953389	140953389	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcaaaggaggaggtggGgggatggcagtacctccagg	19	8	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140953389	T	T	140953389	2	4	81	1	0	0	0	0	0	0	0	1	4558	1219	43	2		2	DIAPH1	5	140953389	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	364336	140953389	39961871	111	85690											
GABRA6	2559	broad.mit.edu	37	chr5	161116209	161116209	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattctatttcccctgcctaAatgatatgtccataatacta	3	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161116209	T	T	161116209	1	4	81	0	1	0	0	0	0	0	0	0	6225	29	1	5		5	GABRA6	5	161116209	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	20162820	161116209	19799051	112	85691											
GFPT2	9945	broad.mit.edu	37	chr5	179751937	179751937	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattacccattgcctttgaCgcccagtgctgggtgtctgc	10	14	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179751937	T	T	179751937	1	4	81	0	1	0	0	0	0	0	0	0	6410	551	19	4		4	GFPT2	5	179751937	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	18635728	179751937	1163323	113	85692											
TRIM7	81786	broad.mit.edu	37	chr5	180625980	180625980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctcggaaggtccccaggCaagcaagtcgggggatcagg	16	10	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180625980	A	A	180625980	1	1	81	0	1	0	0	0	0	0	0	0	16668	725	25	3		3	TRIM7	5	180625980	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	874043	180625980	289280	114	85693											
GPX5	2880	broad.mit.edu	37	chr6	28493940	28493940	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctacttctagaccctgccctCcactccttcttgtaagactc	4	17	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28493940	G	G	28493940	1	3	81	0	1	0	0	0	0	0	0	0	6809	870	30	4		4	GPX5	6	28493940	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08		28493940	142621127	115	85694											
GPX5	2880	broad.mit.edu	37	chr6	28501705	28501705	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatccaggagcagaaataAcattgtttctcttttccatc	5	10	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28501705	G	G	28501705	1	3	81	0	1	0	0	0	0	0	0	0	6809	58	2	5		5	GPX5	6	28501705	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	7765	28501705	142613362	116	85695											
NCR3	259197	broad.mit.edu	37	chr6	31556974	31556974	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggtggaagggaaagttcaGagttgggggaatccggagag	19	4	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31556974	C	C	31556974	1	2	81	0	1	0	0	0	0	0	0	0	10334	929	33	4		4	NCR3	6	31556974	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	3055269	31556974	139558093	117	85696											
HSPA1B	3304	broad.mit.edu	37	chr6	31795721	31795721	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggagcccacagagcagggCaccggcatggccaaagccgc	15	15	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31795721	A	A	31795721	1	1	81	0	1	0	0	0	0	0	0	0	7478	725	25	3		3	HSPA1B	6	31795721	5'UTR	SNP	C	TCGA-17-Z052-01A-01W-0747-08	238747	31795721	139319346	118	85697											
DNAH8	1769	broad.mit.edu	37	chr6	38749013	38749013	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaattcaaacattaacatCagatttttaattacagcttt	3	6	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38749013	A	A	38749013	1	1	81	0	1	0	0	0	0	0	0	0	4647	841	29	3		3	DNAH8	6	38749013	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6953292	38749013	132366054	119	85698											
TDRD6	221400	broad.mit.edu	37	chr6	46661143	46661143	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactgaaaaagatgtaaacAttattggaaccaaaccaagt	6	6	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46661143	T	T	46661143	3	4	81	1	0	0	0	0	1	0	0	0	15856	217	8	5	5280	5	TDRD6	6	46661143	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	7912130	46661143	124453924	120	85699											
PKHD1	5314	broad.mit.edu	37	chr6	51875202	51875202	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctctgcctcagtttccaTggtaatgttacaggagctat	8	10	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51875202	C	C	51875202	3	2	81	1	0	0	0	0	1	0	0	0	12066	1464	51	5	6739	5	PKHD1	6	51875202	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	5214059	51875202	119239865	121	85700											
PRSS35	167681	broad.mit.edu	37	chr6	84233303	84233303	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactttccatctcaccagccCcgcatttgaggcagatgcta	8	14	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84233303	T	T	84233303	3	4	81	1	0	0	0	0	1	0	0	0	12730	623	22	4	145	4	PRSS35	6	84233303	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	32358101	84233303	86881764	122	85701											
PRSS35	167681	broad.mit.edu	37	chr6	84233710	84233710	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtcaaagggagtaaaaagCtaagggtagggttgttgaag	15	2	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84233710	T	T	84233710	2	4	81	1	0	0	0	0	0	0	0	1	12730	796	28	4		4	PRSS35	6	84233710	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	407	84233710	86881357	123	85702											
HACE1	57531	broad.mit.edu	37	chr6	105231889	105231889	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctgaagtgtaataattattCcactaaacagtattagaatt	5	5	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105231889	G	G	105231889	1	3	81	0	1	0	0	0	0	0	0	0	7006	870	30	4		4	HACE1	6	105231889	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	20998179	105231889	65883178	124	85703											
FYN	2534	broad.mit.edu	37	chr6	112015787	112015787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacccaatgtacttagacaCgtcattaaatctatggcaca	6	11	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112015787	A	A	112015787	1	1	81	0	1	0	0	0	0	0	0	0	6186	551	19	3		3	FYN	6	112015787	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6783898	112015787	59099280	125	85704											
C6orf170	221322	broad.mit.edu	37	chr6	121624901	121624901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactctccacaatttcttcCatataccttaaagtttggga	5	10	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121624901	A	A	121624901	3	1	81	1	0	0	0	0	1	0	0	0	2367	594	21	2	2927	2	C6orf170	6	121624901	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	9609114	121624901	49490166	126	85705											
SERINC1	57515	broad.mit.edu	37	chr6	122792966	122792966	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgagattatttactatctgcGagacacttccggacgcacag	9	11	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122792966	A	A	122792966	1	1	81	0	1	0	0	0	0	0	0	0	14192	1073	37	4		4	SERINC1	6	122792966	5'Flank	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1168065	122792966	48322101	127	85706											
ALDH8A1	64577	broad.mit.edu	37	chr6	135271127	135271127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaagaatctatatatgagCtacaaggtaaaaattttcca	6	6	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135271127	A	A	135271127	3	1	81	1	0	0	0	0	1	0	0	0	505	797	28	3	1426	3	ALDH8A1	6	135271127	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	12478161	135271127	35843940	128	85707											
TXLNB	167838	broad.mit.edu	37	chr6	139609591	139609591	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataccatacagaaaagtcacAtatttgaacataactacttg	4	8	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139609591	G	G	139609591	1	3	81	0	1	0	0	0	0	0	0	0	16914	232	8	5		5	TXLNB	6	139609591	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	4338464	139609591	31505476	129	85708											
NMBR	4829	broad.mit.edu	37	chr6	142397138	142397138	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaacagaagatgaaacAgcccacaaagacaagcacaa	6	11	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142397138	G	G	142397138	3	3	81	1	0	0	0	0	1	0	0	0	10582	188	7	5	356	5	NMBR	6	142397138	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	2787547	142397138	28717929	130	85709											
NMBR	4829	broad.mit.edu	37	chr6	142399949	142399949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgggaactgccagcaacaCggagaccacccagataccca	9	15	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142399949	A	A	142399949	3	1	81	1	0	0	0	0	1	0	0	0	10582	536	19	3	666	3	NMBR	6	142399949	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2811	142399949	28715118	131	85710											
TAB2	23118	broad.mit.edu	37	chr6	149700156	149700156	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcagcccactgtttacAtagctgccagccccccaaat	6	15	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149700156	G	G	149700156	3	3	81	1	0	0	0	0	1	0	0	0	15615	217	8	5	1111	5	TAB2	6	149700156	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	7300207	149700156	21414911	132	85711											
SYNE1	23345	broad.mit.edu	37	chr6	152722379	152722379	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaataaacttctccactTgtgtactttgagccgtgaaa	6	9	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152722379	C	C	152722379	3	2	81	1	0	0	0	0	1	0	0	0	15564	1812	63	5	19943	5	SYNE1	6	152722379	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	3022223	152722379	18392688	133	85712											
T	6862	broad.mit.edu	37	chr6	166574294	166574294	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcagagctcccaggaTgctttgcaccaggtcctgga	12	13	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166574294	C	C	166574294	1	2	81	0	1	0	0	0	0	0	0	0	15607	1479	51	5		5	T	6	166574294	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	13851915	166574294	4540773	134	85713											
DNAH11	8701	broad.mit.edu	37	chr7	21901488	21901489	+	Missense_Mutation	DNP	CC	AA	AA													caggcttttaacgtgctgttCcacagagcgatcgagcaggc							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21901489	AA	AA	21901488	3	1	81	1	0	0	0	0	1	0	0	0	4639	854	30	3	11516	3	DNAH11	7	21901488	Missense_Mutation	DNP	CC	TCGA-17-Z052-01A-01W-0747-08		21901488	137237175	135	85714											
EEPD1	80820	broad.mit.edu	37	chr7	36324516	36324516	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttgtaatagcatgagtaaGagaagtctcgtctttttgcc	9	6	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36324516	T	T	36324516	1	4	81	0	1	0	0	0	0	0	0	0	4972	957	33	3		3	EEPD1	7	36324516	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	14423028	36324516	122814147	136	85715											
ELMO1	9844	broad.mit.edu	37	chr7	37264318	37264318	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacagaggccaagggaaaGtaaccatgccattccagtgt	13	9	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37264318	A	A	37264318	1	1	81	0	1	0	0	0	0	0	0	0	5107	1044	36	4		4	ELMO1	7	37264318	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	939802	37264318	121874345	137	85716											
WBSCR17	64409	broad.mit.edu	37	chr7	70880970	70880970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggaaggcctgatccgcGctcgcattgagggctggaag	17	9	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70880970	T	T	70880970	3	4	81	1	0	0	0	0	1	0	0	0	17391	1087	38	3	699	3	WBSCR17	7	70880970	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	33616652	70880970	88257693	138	85717											
FKBP6	8468	broad.mit.edu	37	chr7	72755446	72755446	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgactctggtctgtccccccAccccccccaacaaaggacag	7	19	2	1	rs13235333		TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72755446	C	C	72755446	1	2	81	0	1	0	0	0	0	0	0	0	5969	174	6	5		5	FKBP6	7	72755446	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	1874476	72755446	86383217	139	85718											
POM121C	100101267	broad.mit.edu	37	chr7	75070315	75070315	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcttctctttgagggcactCagtacagtctcctttgcaca	7	12	4	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75070315	A	A	75070315	2	1	81	1	0	0	0	0	0	0	0	1	12335	813	29	3		3	POM121C	7	75070315	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2314869	75070315	84068348	140	85719											
PILRA	29992	broad.mit.edu	37	chr7	99987613	99987613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcacacagggcaaacgacGctcagactcttggcacataa	10	12	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99987613	T	T	99987613	3	4	81	1	0	0	0	0	1	0	0	0	12020	1087	38	3	567	3	PILRA	7	99987613	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	24917298	99987613	59151050	141	85720											
DNAJC2	27000	broad.mit.edu	37	chr7	102968012	102968012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtcaaaggatagttgaAtgaactacagtatgcataag	9	4	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102968012	G	G	102968012	1	3	81	0	1	0	0	0	0	0	0	0	4679	116	4	5		5	DNAJC2	7	102968012	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	2980399	102968012	56170651	142	85721											
LAMB1	3912	broad.mit.edu	37	chr7	107626734	107626734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggcctcacagtcataggcGaagtatctatacacacccca	8	13	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107626734	T	T	107626734	3	4	81	1	0	0	0	0	1	0	0	0	8682	1049	37	3	4978	3	LAMB1	7	107626734	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	4658722	107626734	51511929	143	85722											
CPA5	93979	broad.mit.edu	37	chr7	130002835	130002835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcttttacccacagcatGgtgagggaacctgggaagga	13	8	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130002835	T	T	130002835	3	4	81	1	0	0	0	0	1	0	0	0	3825	1362	47	2	773	2	CPA5	7	130002835	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	22376101	130002835	29135828	144	85723											
SLC13A4	26266	broad.mit.edu	37	chr7	135379936	135379936	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtgcagagttcacaaaTgtttagaatgtctagaagag	11	4	2	5			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135379936	C	C	135379936	1	2	81	0	1	0	0	0	0	0	0	0	14507	1479	51	5		5	SLC13A4	7	135379936	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	5377101	135379936	23758727	145	85724											
GALNT11	63917	broad.mit.edu	37	chr7	151814453	151814453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgacccaaagtccttcaacGtggaagggtaagaaagctgt	11	9	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151814453	T	T	151814453	3	4	81	1	0	0	0	0	1	0	0	0	6271	1145	40	3	1475	3	GALNT11	7	151814453	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	16434517	151814453	7324210	146	85725											
RP1L1	94137	broad.mit.edu	37	chr8	10465305	10465305	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttctgcctctggggcctcTacaccttctgattctggctg	9	15	5	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10465305	C	C	10465305	2	2	81	1	0	0	0	0	0	0	0	1	13644	1509	53	5		5	RP1L1	8	10465305	Silent	SNP	T	TCGA-17-Z052-01A-01W-0747-08		10465305	135898717	147	85726											
XKR6	286046	broad.mit.edu	37	chr8	10782281	10782281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcatagcccagtagaagCgtcgctggtgttccttccgc	10	13	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10782281	A	A	10782281	3	1	81	1	0	0	0	0	1	0	0	0	17562	768	27	3	1109	3	XKR6	8	10782281	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	316976	10782281	135581741	148	85727											
PSD3	23362	broad.mit.edu	37	chr8	18730268	18730268	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagaacacaatggacatAtgacttgttgtagaaagaca	10	5	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18730268	C	C	18730268	1	2	81	0	1	0	0	0	0	0	0	0	12754	464	16	5		5	PSD3	8	18730268	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	7947987	18730268	127633754	149	85728											
NEFL	4747	broad.mit.edu	37	chr8	24811811	24811811	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattcattttctaatttgttGatcgtgtcctgtttgaagac	7	6	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24811811	C	C	24811811	3	2	81	1	0	0	0	0	1	0	0	0	10410	1280	45	4	591	4	NEFL	8	24811811	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6081543	24811811	121552211	150	85729											
C8orf41	80185	broad.mit.edu	37	chr8	33369617	33369617	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggtgagcacctccctaGcaacttcccgagatctcgga	11	13	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33369617	A	A	33369617	3	1	81	1	0	0	0	0	1	0	0	0	2453	971	34	4	1039	4	C8orf41	8	33369617	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	8557806	33369617	112994405	151	85730											
SNTG1	54212	broad.mit.edu	37	chr8	51415275	51415275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaccaataatttcaaggCtttgccatcatataacatga	4	9	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51415275	A	A	51415275	1	1	81	0	1	0	0	0	0	0	0	0	14988	812	28	3		3	SNTG1	8	51415275	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	18045658	51415275	94948747	152	85731											
TTPA	7274	broad.mit.edu	37	chr8	63973809	63973809	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccattcacatgacataactTctcattgaatgctctcagaa	5	11	3	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63973809	G	G	63973809	1	3	81	0	1	0	0	0	0	0	0	0	16862	1798	62	5		5	TTPA	8	63973809	3'UTR	SNP	T	TCGA-17-Z052-01A-01W-0747-08	12558534	63973809	82390213	153	85732											
ZFHX4	79776	broad.mit.edu	37	chr8	77767199	77767199	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaacggtgtccgttttgccGagccctgtttaaagcaaagt	10	9	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767199	A	A	77767199	3	1	81	1	0	0	0	0	1	0	0	0	17761	1058	37	4	8076	4	ZFHX4	8	77767199	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	13793390	77767199	68596823	154	85733											
FBXO43	286151	broad.mit.edu	37	chr8	101154315	101154315	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagtacttggagttgacaAttggaggagagtccgcccca	14	8	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101154315	T	T	101154315	3	4	81	1	0	0	0	0	1	0	0	0	5809	101	4	5	1975	5	FBXO43	8	101154315	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	23387116	101154315	45209707	155	85734											
CSMD3	114788	broad.mit.edu	37	chr8	113348814	113348814	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacagaggattgtgatataTttttattccaaccttgtttt	6	5	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113348814	C	C	113348814	1	2	81	0	1	0	0	0	0	0	0	0	3980	1508	52	5		5	CSMD3	8	113348814	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	12194499	113348814	33015208	156	85735											
COL14A1	7373	broad.mit.edu	37	chr8	121237374	121237374	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctgaagggcttgacaccTctcacagagtatactattgc	8	12	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121237374	A	A	121237374	2	1	81	1	0	0	0	0	0	0	0	1	3703	1538	54	5		5	COL14A1	8	121237374	Silent	SNP	T	TCGA-17-Z052-01A-01W-0747-08	7888560	121237374	25126648	157	85736											
TG	7038	broad.mit.edu	37	chr8	133894758	133894758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgacaccatttttgctGgcctggaccttccttccacc	6	14	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133894758	T	T	133894758	3	4	81	1	0	0	0	0	1	0	0	0	15936	1348	47	2	816	2	TG	8	133894758	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	12657384	133894758	12469264	158	85737											
BAI1	575	broad.mit.edu	37	chr8	143623464	143623464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaagctgcacctgcacgGctcaccccgctatcccggcg	10	19	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143623464	T	T	143623464	3	4	81	1	0	0	0	0	1	0	0	0	1303	1203	42	3	3975	3	BAI1	8	143623464	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	9728706	143623464	2740558	159	85738											
TTC39B	158219	broad.mit.edu	37	chr9	15267816	15267816	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaaaatagccattgccGtactctccaaaaaatgagaa	6	9	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15267816	A	A	15267816	1	1	81	0	1	0	0	0	0	0	0	0	16834	1160	40	4		4	TTC39B	9	15267816	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08		15267816	125945615	160	85739											
IFNA10	3446	broad.mit.edu	37	chr9	21206670	21206670	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttggaagtatttcctcaCagccaggatggagtcctcat	9	10	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21206670	G	G	21206670	3	3	81	1	0	0	0	0	1	0	0	0	7602	478	17	4	146	4	IFNA10	9	21206670	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	5938854	21206670	120006761	161	85740											
FBP2	8789	broad.mit.edu	37	chr9	97329421	97329421	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaagaaaggcagagtccatCatcttcatactgaccacagc	8	11	3	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97329421	A	A	97329421	1	1	81	0	1	0	0	0	0	0	0	0	5763	841	29	3		3	FBP2	9	97329421	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	76122751	97329421	43884010	162	85741											
COL15A1	1306	broad.mit.edu	37	chr9	101797643	101797643	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccccaggataccgaaggCtctggaagcacccagctatt	9	14	1	0	rs147208600		TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101797643	A	A	101797643	2	1	81	1	0	0	0	0	0	0	0	1	3704	784	28	3		3	COL15A1	9	101797643	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	4468222	101797643	39415788	163	85742											
RNF20	56254	broad.mit.edu	37	chr9	104314692	104314692	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtagtggtagtgccctcCtgcagtcccagtctagtact	11	12	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104314692	T	T	104314692	2	4	81	1	0	0	0	0	0	0	0	1	13584	680	24	4		4	RNF20	9	104314692	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2517049	104314692	36898739	164	85743											
ZNF462	58499	broad.mit.edu	37	chr9	109694645	109694645	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggatggtgaacactgcttGcttgatggaatgttggagga	16	4	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109694645	C	C	109694645	1	2	81	0	1	0	0	0	0	0	0	0	18053	1334	46	4		4	ZNF462	9	109694645	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	5379953	109694645	31518786	165	85744											
TSC1	7248	broad.mit.edu	37	chr9	135802578	135802578	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaaatgcctatgatatttCagccattaccttgtcatgtg	7	8	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135802578	T	T	135802578	1	4	81	0	1	0	0	0	0	0	0	0	16730	841	29	4		4	TSC1	9	135802578	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	26107933	135802578	5410853	166	85745											
QSOX2	169714	broad.mit.edu	37	chr9	139100623	139100623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaccgcctggacctcaccCggaagaagaagtacatcacc	8	16	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139100623	A	A	139100623	3	1	81	1	0	0	0	0	1	0	0	0	12992	652	23	1	52	1	QSOX2	9	139100623	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	3298045	139100623	2112808	167	85746											
AKR1C4	1109	broad.mit.edu	37	chr10	5242095	5242095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacttttcctgtttcactaCctctcaagcacattgatcac	4	13	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5242095	A	A	5242095	1	1	81	0	1	0	0	0	0	0	0	0	472	522	18	3		3	AKR1C4	10	5242095	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08		5242095	130292652	168	85747											
FBXO18	84893	broad.mit.edu	37	chr10	5958131	5958131	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtgacattagagagaatgGaggggacgttcaatagcacc	14	6	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5958131	T	T	5958131	1	4	81	0	1	0	0	0	0	0	0	0	5788	1189	41	3		3	FBXO18	10	5958131	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	716036	5958131	129576616	169	85748											
MRC1	4360	broad.mit.edu	37	chr10	18145324	18145324	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacttaagctgagcacgtatGagttgataccgttggcttta	11	7	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18145324	T	T	18145324	1	4	81	0	1	0	0	0	0	0	0	0	9850	1305	45	3		3	MRC1	10	18145324	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	12187193	18145324	117389423	170	85749											
ZNF33A	7581	broad.mit.edu	37	chr10	38343848	38343848	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcatccctcttgttccatCagatatctccgtcaagggac	7	13	5	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38343848	G	G	38343848	3	3	81	1	0	0	0	0	1	0	0	0	17980	827	29	4	810	4	ZNF33A	10	38343848	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	20198524	38343848	97190899	171	85750											
ARID5B	84159	broad.mit.edu	37	chr10	63851672	63851672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataaactcttagagaaaaGggccctcccccattcccaca	7	14	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63851672	T	T	63851672	3	4	81	1	0	0	0	0	1	0	0	0	924	1000	35	2	2488	2	ARID5B	10	63851672	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	25507824	63851672	71683075	172	85751											
DDX50	79009	broad.mit.edu	37	chr10	70694586	70694586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatatccatcgctctggacGcacaggtagagctggacgga	12	11	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70694586	T	T	70694586	3	4	81	1	0	0	0	0	1	0	0	0	4401	1087	38	3	1471	3	DDX50	10	70694586	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6842914	70694586	64840161	173	85752											
SH2D4B	387694	broad.mit.edu	37	chr10	82363385	82363385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagccgccgagcccagcgcGcccgggacgagtaccgacac	15	17	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82363385	T	T	82363385	3	4	81	1	0	0	0	0	1	0	0	0	14349	1087	38	3	753	3	SH2D4B	10	82363385	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	11668799	82363385	53171362	174	85753											
TLL2	7093	broad.mit.edu	37	chr10	98173132	98173132	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatcaggctgtctgtgctGggatttctaggcttcattcc	11	11	4	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98173132	A	A	98173132	1	1	81	0	1	0	0	0	0	0	0	0	16069	1363	47	4		4	TLL2	10	98173132	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	15809747	98173132	37361615	175	85754											
DNMBP	23268	broad.mit.edu	37	chr10	101659593	101659593	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatgtttaaaataagatgtCatcatcaagtccaggcatat	6	6	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101659593	T	T	101659593	1	4	81	0	1	0	0	0	0	0	0	0	4714	841	29	4		4	DNMBP	10	101659593	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	3486461	101659593	33875154	176	85755											
NRAP	4892	broad.mit.edu	37	chr10	115370307	115370307	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctcgcataaagttcaggtCtgaccggtacaaattctaga	8	10	3	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115370307	A	A	115370307	3	1	81	1	0	0	0	0	1	0	0	0	10733	913	32	3	1726	3	NRAP	10	115370307	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	13710714	115370307	20164440	177	85756											
DMBT1	1755	broad.mit.edu	37	chr10	124402655	124402655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgcgtgagggatgacaCctacggaccctactcctcgc	11	14	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124402655	A	A	124402655	3	1	81	1	0	0	0	0	1	0	0	0	4617	507	18	3	7193	3	DMBT1	10	124402655	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	9032348	124402655	11132092	178	85757											
IFITM3	10410	broad.mit.edu	37	chr11	320440	320440	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgacgtgggcacacacGggacagaggtgcacacaaac	12	13	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	320440	A	A	320440	1	1	81	0	1	0	0	0	0	0	0	0	7598	1131	39	4		4	IFITM3	11	320440	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08		320440	134686076	179	85758											
NLRP14	338323	broad.mit.edu	37	chr11	7079461	7079461	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgaaggagaagagaaGcatgggctttgggaattgac	15	6	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7079461	T	T	7079461	1	4	81	0	1	0	0	0	0	0	0	0	10571	986	34	3		3	NLRP14	11	7079461	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6759021	7079461	127927055	180	85759											
CALCB	797	broad.mit.edu	37	chr11	15098928	15098928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcatggtgaagagcaaCttcgtgcccaccaatgtggg	16	9	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15098928	A	A	15098928	3	1	81	1	0	0	0	0	1	0	0	0	2602	564	20	3	331	3	CALCB	11	15098928	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	8019467	15098928	119907588	181	85760											
SLC1A2	6506	broad.mit.edu	37	chr11	35308396	35308396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataaagggctgtaccatcCatgttaatggttgctccaac	8	10	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35308396	A	A	35308396	3	1	81	1	0	0	0	0	1	0	0	0	14545	594	21	2	546	2	SLC1A2	11	35308396	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	20209468	35308396	99698120	182	85761											
PAMR1	25891	broad.mit.edu	37	chr11	35454045	35454045	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcaggagatgctcgtccCgggaaggacacagccgcgat	15	12	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35454045	A	A	35454045	2	1	81	1	0	0	0	0	0	0	0	1	11507	639	23	1		1	PAMR1	11	35454045	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	145649	35454045	99552471	183	85762											
OR4S1	256148	broad.mit.edu	37	chr11	48328542	48328542	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccccccatgttcatgtaCattcgtccctccaccaccct	4	19	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48328542	A	A	48328542	4	1	81	1	0	0	0	0	0	1	0	0	11176	489	17	3	770	3	OR4S1	11	48328542	Nonsense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	12874497	48328542	86677974	184	85763											
OR4A16	81327	broad.mit.edu	37	chr11	55111202	55111202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgttattgaccactctGtctgtgacatgtacccattg	7	11	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55111202	T	T	55111202	3	4	81	1	0	0	0	0	1	0	0	0	11135	1377	48	3	528	3	OR4A16	11	55111202	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6782660	55111202	79895314	185	85764											
OR4C6	219432	broad.mit.edu	37	chr11	55433272	55433272	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtgtggccatctttctTatcttaattgcgtcctacac	7	10	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55433272	C	C	55433272	2	2	81	1	0	0	0	0	0	0	0	1	11146	1741	61	5		5	OR4C6	11	55433272	Silent	SNP	T	TCGA-17-Z052-01A-01W-0747-08	322070	55433272	79573244	186	85765											
OR5T3	390154	broad.mit.edu	37	chr11	56020000	56020000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctattctacagttgtcactCcaaaaatgttggtcaatttc	6	9	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020000	A	A	56020000	3	1	81	1	0	0	0	0	1	0	0	0	11277	855	30	3	327	3	OR5T3	11	56020000	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	586728	56020000	78986516	187	85766											
SLC22A24	283238	broad.mit.edu	37	chr11	62910881	62910881	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtggagaggaaagagcttCtgtcgtacacccagccatcc	12	11	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62910881	G	G	62910881	3	3	81	1	0	0	0	0	1	0	0	0	14567	913	32	4	1322	4	SLC22A24	11	62910881	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6890881	62910881	72095635	188	85767											
HRASLS5	117245	broad.mit.edu	37	chr11	63233599	63233599	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctgctggctccggggtaCgccatatctgaggccattga	12	13	1	2	rs139644791	by1000genomes	TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63233599	T	T	63233599	3	4	81	1	0	0	0	0	1	0	0	0	7418	536	19	4	117	4	HRASLS5	11	63233599	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	322718	63233599	71772917	189	85768											
NRXN2	9379	broad.mit.edu	37	chr11	64434817	64434817	+	Missense_Mutation	SNP	T	A	A													tgatgcccccagatcccatgTccagcagaagatagaggtgg							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64434817	A	A	64434817	3	1	81	1	0	0	0	0	1	0	0	0	10761	1667	58	5	3764	5	NRXN2	11	64434817	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	1201218	64434817	70571699	190	85769	389	2									
NRXN2	9379	broad.mit.edu	37	chr11	64434819	64434819	+	Silent	SNP	C	A	A													atgcccccagatcccatgtcCagcagaagatagaggtggcc							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64434819	A	A	64434819	2	1	81	1	0	0	0	0	0	0	0	1	10761	581	21	2		2	NRXN2	11	64434819	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2	64434819	70571697	191	85770	389	2									
FRMD8	83786	broad.mit.edu	37	chr11	65161478	65161478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagggctaagcagagtggGgatgcccggcagtgacccag	19	9	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65161478	T	T	65161478	1	4	81	0	1	0	0	0	0	0	0	0	6116	1247	43	2		2	FRMD8	11	65161478	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	726659	65161478	69845038	192	85771											
UCP2	7351	broad.mit.edu	37	chr11	73688074	73688074	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctggcatctgtgggcgagCcatggggtcagtggccagcg	18	10	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73688074	G	G	73688074	1	3	81	0	1	0	0	0	0	0	0	0	17057	754	26	4		4	UCP2	11	73688074	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	8526596	73688074	61318442	193	85772											
NOX4	50507	broad.mit.edu	37	chr11	89177260	89177260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagaccctcattagtcatcTcatgacaagtgaaagaaaaa	6	9	3	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177260	A	A	89177260	1	1	81	0	1	0	0	0	0	0	0	0	10653	1566	54	5		5	NOX4	11	89177260	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	15489186	89177260	45829256	194	85773											
CNTN5	53942	broad.mit.edu	37	chr11	100169930	100169930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaatggggaaggcttcGgctatattgtggctttcaga	13	6	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100169930	T	T	100169930	3	4	81	1	0	0	0	0	1	0	0	0	3676	1116	39	1	2492	1	CNTN5	11	100169930	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	10992670	100169930	34836586	195	85774											
EXPH5	23086	broad.mit.edu	37	chr11	108382260	108382260	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcagtcatattttcagtgGtgagcgtctgatcagagttg	13	6	4	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108382260	C	C	108382260	3	2	81	1	0	0	0	0	1	0	0	0	5365	1261	44	4	1999	4	EXPH5	11	108382260	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	8212330	108382260	26624256	196	85775											
TTC12	54970	broad.mit.edu	37	chr11	113222827	113222827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagcagctcctcggctctGtgccagtgcattgccatcat	10	13	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113222827	T	T	113222827	2	4	81	1	0	0	0	0	0	0	0	1	16805	1364	48	3		3	TTC12	11	113222827	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	4840567	113222827	21783689	197	85776											
HYOU1	10525	broad.mit.edu	37	chr11	118919112	118919112	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacatgtaaacacatgcaCccacaagcccagaggcaagg	11	12	0	1	rs45538234	by1000genomes	TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118919112	T	T	118919112	1	4	81	0	1	0	0	0	0	0	0	0	7540	522	18	4		4	HYOU1	11	118919112	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	5696285	118919112	16087404	198	85777											
ARHGEF12	23365	broad.mit.edu	37	chr11	120322257	120322257	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actacagaaggcgcgccaccCtaagcacttatccacaccct	6	17	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120322257	G	G	120322257	3	3	81	1	0	0	0	0	1	0	0	0	899	681	24	4	1966	4	ARHGEF12	11	120322257	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1403145	120322257	14684259	199	85778											
TECTA	7007	broad.mit.edu	37	chr11	120983865	120983865	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaaatcaactggaccacgGggacggcgagtggcggcgac	16	11	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120983865	A	A	120983865	3	1	81	1	0	0	0	0	1	0	0	0	15869	1232	43	4	585	4	TECTA	11	120983865	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	661608	120983865	14022651	200	85779											
UBASH3B	84959	broad.mit.edu	37	chr11	122667742	122667742	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcaagcaagactagtggGtaagtatcctggagtgactg	13	7	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122667742	T	T	122667742	5	4	81	1	0	0	0	0	0	0	1	0	16966	1275	44	3	1392	3	UBASH3B	11	122667742	Splice_Site	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1683877	122667742	12338774	201	85780											
OR4D5	219875	broad.mit.edu	37	chr11	123810321	123810321	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgacaaggtcataccaacCagatgaatccagcaaatcat	6	10	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123810321	A	A	123810321	1	1	81	0	1	0	0	0	0	0	0	0	11151	609	21	2		2	OR4D5	11	123810321	5'Flank	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1142579	123810321	11196195	202	85781											
SLC37A2	219855	broad.mit.edu	37	chr11	124949019	124949019	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccccagtggggtttttgGggagcggcttccgctccgtt	14	12	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124949019	A	A	124949019	3	1	81	1	0	0	0	0	1	0	0	0	14712	1232	43	4	344	4	SLC37A2	11	124949019	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1138698	124949019	10057497	203	85782											
CLEC4E	26253	broad.mit.edu	37	chr12	8688824	8688824	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggaagatacaaaataaaaGgagatcagttattttagttt	8	2	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8688824	C	C	8688824	1	2	81	0	1	0	0	0	0	0	0	0	3547	1015	35	4		4	CLEC4E	12	8688824	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08		8688824	125163071	204	85783											
SSPN	8082	broad.mit.edu	37	chr12	26383940	26383940	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgtggaaacataggtaCcaggtcttctatgtgggtgt	14	5	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26383940	A	A	26383940	4	1	81	1	0	0	0	0	0	1	0	0	15306	518	18	3	673	3	SSPN	12	26383940	Nonsense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	17695116	26383940	107467955	205	85784											
PDZRN4	29951	broad.mit.edu	37	chr12	41967375	41967375	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccacagacgatgacaccAtgagcgagatgaaaatgggg	13	8	0	6			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41967375	G	G	41967375	3	3	81	1	0	0	0	0	1	0	0	0	11804	217	8	5	2905	5	PDZRN4	12	41967375	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	15583435	41967375	91884520	206	85785											
BIN2	51411	broad.mit.edu	37	chr12	51707746	51707746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtctctcttacatgttgGcctcatatgaccctggcttc	7	13	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51707746	T	T	51707746	1	4	81	0	1	0	0	0	0	0	0	0	1439	1218	42	3		3	BIN2	12	51707746	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	9740371	51707746	82144149	207	85786											
KRT73	319101	broad.mit.edu	37	chr12	53012018	53012018	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacccccgggcgggcacaaCgacggacacacggaccccaa	11	17	0	0	rs142655706	byFrequency	TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53012018	T	T	53012018	2	4	81	1	0	0	0	0	0	0	0	1	8557	523	19	4		4	KRT73	12	53012018	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1304272	53012018	80839877	208	85787											
COPZ1	22818	broad.mit.edu	37	chr12	54744209	54744209	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatccccagccctcatccTtaccctgccctgtcagcaag	7	18	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54744209	A	A	54744209	1	1	81	0	1	0	0	0	0	0	0	0	3773	1624	56	5		5	COPZ1	12	54744209	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	1732191	54744209	79107686	209	85788											
SMARCC2	6601	broad.mit.edu	37	chr12	56583110	56583110	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcccgcccccggtccccGcgcggcccggcccggcccgc	13	24	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56583110	A	A	56583110	1	1	81	0	1	0	0	0	0	0	0	0	14890	1102	38	4		4	SMARCC2	12	56583110	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1838901	56583110	77268785	210	85789											
TAC3	6866	broad.mit.edu	37	chr12	57409555	57409555	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaggctgaaggccaggatGgctgtgaatagcagcatgat	15	7	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57409555	A	A	57409555	2	1	81	1	0	0	0	0	0	0	0	1	15618	1335	47	4		4	TAC3	12	57409555	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	826445	57409555	76442340	211	85790											
PTPRR	5801	broad.mit.edu	37	chr12	71066181	71066181	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtagactgggaagtggagCagctgtggtcattggaaaga	17	4	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71066181	T	T	71066181	1	4	81	0	1	0	0	0	0	0	0	0	12918	725	25	4		4	PTPRR	12	71066181	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	13656626	71066181	62785714	212	85791											
PTPRR	5801	broad.mit.edu	37	chr12	71286916	71286916	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcttcatgatcctcaaCaaatagtatacacctggtgg	8	10	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71286916	G	G	71286916	1	3	81	0	1	0	0	0	0	0	0	0	12918	493	17	4		4	PTPRR	12	71286916	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	220735	71286916	62564979	213	85792											
ZFC3H1	196441	broad.mit.edu	37	chr12	72056938	72056938	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcgactcccaccccgGtaaggcctgcctcgaaagcg	10	18	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72056938	A	A	72056938	2	1	81	1	0	0	0	0	0	0	0	1	17759	1256	44	4		4	ZFC3H1	12	72056938	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	770022	72056938	61794957	214	85793											
BBS10	79738	broad.mit.edu	37	chr12	76740088	76740088	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgacctgtaaattttcGtaagaaatttctattctatt	5	5	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76740088	A	A	76740088	2	1	81	1	0	0	0	0	0	0	0	1	1341	1140	40	4		4	BBS10	12	76740088	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	4683150	76740088	57111807	215	85794											
NAV3	89795	broad.mit.edu	37	chr12	78553177	78553177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggctgagtgcagaggCtcatgcctgtaatctcacca	10	12	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78553177	A	A	78553177	1	1	81	0	1	0	0	0	0	0	0	0	10279	812	28	3		3	NAV3	12	78553177	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1813089	78553177	55298718	216	85795											
STAB2	55576	broad.mit.edu	37	chr12	104127024	104127024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgataaaattcagcacCaaggcattgtggcctaggaa	12	7	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104127024	A	A	104127024	1	1	81	0	1	0	0	0	0	0	0	0	15356	609	21	2		2	STAB2	12	104127024	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	25573847	104127024	29724871	217	85796											
TRPV4	59341	broad.mit.edu	37	chr12	110226571	110226571	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgtgagcacacccacagaGaggtggagggtgtcattctc	14	9	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110226571	T	T	110226571	1	4	81	0	1	0	0	0	0	0	0	0	16723	957	33	3		3	TRPV4	12	110226571	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6099547	110226571	23625324	218	85797											
C12orf51	283450	broad.mit.edu	37	chr12	112648095	112648095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggatttggaaagacttaCgtttatttttatttctgcaa	8	4	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112648095	A	A	112648095	1	1	81	0	1	0	0	0	0	0	0	0	1709	551	19	3		3	C12orf51	12	112648095	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2421524	112648095	21203800	219	85798											
TBX5	6910	broad.mit.edu	37	chr12	114832505	114832505	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agattcatgcaaaagaaagaGcagacggccccaggcactgg	12	10	1	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114832505	A	A	114832505	1	1	81	0	1	0	0	0	0	0	0	0	15783	986	34	4		4	TBX5	12	114832505	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2184410	114832505	19019390	220	85799											
WDR66	144406	broad.mit.edu	37	chr12	122361785	122361785	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagaggagggacaagaaagGagagtatccgacatccagtc	14	7	0	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122361785	A	A	122361785	2	1	81	1	0	0	0	0	0	0	0	1	17444	1165	41	4		4	WDR66	12	122361785	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	7529280	122361785	11490110	221	85800											
RIMBP2	23504	broad.mit.edu	37	chr12	130926460	130926460	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccagcgggagctgccaCggcatctggtggggtttggc	17	11	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130926460	A	A	130926460	2	1	81	1	0	0	0	0	0	0	0	1	13472	523	19	3		3	RIMBP2	12	130926460	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	8564675	130926460	2925435	222	85801											
P2RX2	22953	broad.mit.edu	37	chr12	133197814	133197814	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccctggagtgcagaggacGagtgggcactggcgttccca	16	11	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133197814	A	A	133197814	1	1	81	0	1	0	0	0	0	0	0	0	11434	1073	37	4		4	P2RX2	12	133197814	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2271354	133197814	654081	223	85802											
ATP12A	479	broad.mit.edu	37	chr13	25272964	25272964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagcctacatggagctgGgcgggttgggcgagcgtgtg	18	9	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25272964	T	T	25272964	3	4	81	1	0	0	0	0	1	0	0	0	1126	1232	43	2	1745	2	ATP12A	13	25272964	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08		25272964	89896914	224	85803											
CENPJ	55835	broad.mit.edu	37	chr13	25480126	25480126	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attccattcagtctgattttCagaagtgctcttttggacgg	9	8	4	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25480126	G	G	25480126	3	3	81	1	0	0	0	0	1	0	0	0	3264	835	29	4	2010	4	CENPJ	13	25480126	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	207162	25480126	89689752	225	85804											
C13orf30	144809	broad.mit.edu	37	chr13	43362849	43362849	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacttcagccatgacaagaAgatgtccatcagtactacct	6	11	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43362849	G	G	43362849	3	3	81	1	0	0	0	0	1	0	0	0	1738	64	3	5	353	5	C13orf30	13	43362849	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	17882723	43362849	71807029	226	85805											
PCDH20	64881	broad.mit.edu	37	chr13	61987324	61987324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaatggtgagagtggcaCtgcccaaaagtggtggagac	15	8	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61987324	A	A	61987324	3	1	81	1	0	0	0	0	1	0	0	0	11609	565	20	3	1951	3	PCDH20	13	61987324	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	18624475	61987324	53182554	227	85806											
ZIC2	7546	broad.mit.edu	37	chr13	100635355	100635355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcaaagtcttcgcgcGctccgagaacctcaagatcc	10	14	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100635355	T	T	100635355	3	4	81	1	0	0	0	0	1	0	0	0	17805	1087	38	3	1039	3	ZIC2	13	100635355	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	38648031	100635355	14534523	228	85807											
NALCN	259232	broad.mit.edu	37	chr13	101726976	101726976	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagaagctcttgtacatgCtgacgaccactgtcaagagg	10	9	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101726976	T	T	101726976	3	4	81	1	0	0	0	0	1	0	0	0	10242	797	28	4	1260	4	NALCN	13	101726976	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1091621	101726976	13442902	229	85808											
ATP11A	23250	broad.mit.edu	37	chr13	113530269	113530269	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtccaggtacggagtgtccCcagccggggcgggggtgcct	18	12	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113530269	G	G	113530269	1	3	81	0	1	0	0	0	0	0	0	0	1123	638	22	4		4	ATP11A	13	113530269	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	11803293	113530269	1639609	230	85809											
OR4Q3	441669	broad.mit.edu	37	chr14	20216282	20216282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaacacacttctgccaGggccagaacaaggtcttctc	9	13	3	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20216282	T	T	20216282	3	4	81	1	0	0	0	0	1	0	0	0	11175	991	35	2	698	2	OR4Q3	14	20216282	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08		20216282	87133258	231	85810											
OR4L1	122742	broad.mit.edu	37	chr14	20528810	20528810	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattatttgtcattgctgacAgcgggctgctctctttcacc	8	11	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20528810	T	T	20528810	3	4	81	1	0	0	0	0	1	0	0	0	11168	188	7	5	609	5	OR4L1	14	20528810	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	312528	20528810	86820730	232	85811											
NYNRIN	57523	broad.mit.edu	37	chr14	24878354	24878354	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaattgcccaaggccagagAtttccccaaaagttacgagt	9	10	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24878354	G	G	24878354	3	3	81	1	0	0	0	0	1	0	0	0	10891	333	12	5	1364	5	NYNRIN	14	24878354	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	4349544	24878354	82471186	233	85812											
SLC25A21	89874	broad.mit.edu	37	chr14	37153894	37153894	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatggaaggacaatacggTtctaacaatacgtgagcctc	9	8	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37153894	A	A	37153894	1	1	81	0	1	0	0	0	0	0	0	0	14598	1740	60	5		5	SLC25A21	14	37153894	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	12275540	37153894	70195646	234	85813											
BMP4	652	broad.mit.edu	37	chr14	54416809	54416809	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttttcagtaccaccttatCatactcatccaggtacagca	4	12	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54416809	A	A	54416809	3	1	81	1	0	0	0	0	1	0	0	0	1468	826	29	3	62	3	BMP4	14	54416809	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	17262915	54416809	52932731	235	85814											
DLGAP5	9787	broad.mit.edu	37	chr14	55643890	55643890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccatccagtggctgaaaCataaaatccttaggtgcaaa	8	9	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55643890	A	A	55643890	3	1	81	1	0	0	0	0	1	0	0	0	4603	478	17	3	1744	3	DLGAP5	14	55643890	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1227081	55643890	51705650	236	85815											
MAX	4149	broad.mit.edu	37	chr14	65550994	65550994	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatgaaggacaggagtacaCaatttccaaaagaggaaata	10	6	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65550994	T	T	65550994	1	4	81	0	1	0	0	0	0	0	0	0	9431	477	17	4		4	MAX	14	65550994	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	9907104	65550994	41798546	237	85816											
ZFYVE26	23503	broad.mit.edu	37	chr14	68222808	68222808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaagtgtgtagcttccCacttttatagcttggttgga	9	9	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68222808	A	A	68222808	3	1	81	1	0	0	0	0	1	0	0	0	17794	594	21	2	1004	2	ZFYVE26	14	68222808	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2671814	68222808	39126732	238	85817											
SLC8A3	6547	broad.mit.edu	37	chr14	70518747	70518747	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caatgatgacttctagtttgGggtgttcacccaatactggc	10	9	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70518747	C	C	70518747	3	2	81	1	0	0	0	0	1	0	0	0	14822	1232	43	4	808	4	SLC8A3	14	70518747	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2295939	70518747	36830793	239	85818											
ESRRB	2103	broad.mit.edu	37	chr14	76905587	76905587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatcgcaccaaagccttagCatagagcccttcccagccac	6	16	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76905587	T	T	76905587	1	4	81	0	1	0	0	0	0	0	0	0	5303	725	25	4		4	ESRRB	14	76905587	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6386840	76905587	30443953	240	85819											
ESRRB	2103	broad.mit.edu	37	chr14	76906060	76906060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcgtggcctcctgcgagGcttgcaaggccttcttcaag	13	13	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76906060	T	T	76906060	3	4	81	1	0	0	0	0	1	0	0	0	5303	1203	42	3	366	3	ESRRB	14	76906060	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	473	76906060	30443480	241	85820											
NRXN3	9369	broad.mit.edu	37	chr14	79176096	79176096	+	Intron	DEL	C	-	-													ttaattttcacccttgcatgCttgttgattcttttgctact							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79176096	-	-	79176096	6	5	81	0	1	1	0	1	0	0	0	0	10762	812	28	0		0	NRXN3	14	79176096	Intron	DEL	C	TCGA-17-Z052-01A-01W-0747-08	2270036	79176096	28173444	242	85821											
SLC24A4	123041	broad.mit.edu	37	chr14	92909097	92909097	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacgtcggggtgggcaccatCgtgggctctgctgtgttcaa	16	10	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92909097	A	A	92909097	2	1	81	1	0	0	0	0	0	0	0	1	14582	874	31	3		3	SLC24A4	14	92909097	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	13733001	92909097	14440443	243	85822											
ASB2	51676	broad.mit.edu	37	chr14	94413680	94413680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctgcctgggtgctggcGgagcctgggctgacctgtag	18	10	0	2	rs117452913	by1000genomes	TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94413680	T	T	94413680	1	4	81	0	1	0	0	0	0	0	0	0	1027	1131	39	1		1	ASB2	14	94413680	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1504583	94413680	12935860	244	85823											
DIO3	1735	broad.mit.edu	37	chr14	102027994	102027994	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcttcccgcgcttcctcgGcacggccttcatgctctggc	10	18	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102027994	A	A	102027994	3	1	81	1	0	0	0	0	1	0	0	0	4566	1203	42	4	163	4	DIO3	14	102027994	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	7614314	102027994	5321546	245	85824											
GABRB3	2562	broad.mit.edu	37	chr15	26805871	26805871	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actctggccagtcctagctaGatggccaggactccactgga	11	13	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26805871	C	C	26805871	1	2	81	0	1	0	0	0	0	0	0	0	6228	957	33	4		4	GABRB3	15	26805871	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08		26805871	75725521	246	85825											
HERC2	8924	broad.mit.edu	37	chr15	28388988	28388988	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattccccaagggtcacaAatctagaaattgtactagaa	6	8	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28388988	T	T	28388988	1	4	81	0	1	0	0	0	0	0	0	0	7125	29	1	5		5	HERC2	15	28388988	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	1583117	28388988	74142404	247	85826											
GJD2	57369	broad.mit.edu	37	chr15	35045114	35045114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgcgtagacctgatggGtgtggagtcagctccttaac	14	9	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35045114	T	T	35045114	3	4	81	1	0	0	0	0	1	0	0	0	6481	1252	44	3	438	3	GJD2	15	35045114	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6656126	35045114	67486278	248	85827											
LYSMD2	256586	broad.mit.edu	37	chr15	52017211	52017211	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagaatcaatggagttaagTccattaaacaacaaaggctt	9	6	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52017211	C	C	52017211	2	2	81	1	0	0	0	0	0	0	0	1	9213	1654	58	5		5	LYSMD2	15	52017211	Silent	SNP	T	TCGA-17-Z052-01A-01W-0747-08	16972097	52017211	50514181	249	85828											
LRRC49	54839	broad.mit.edu	37	chr15	71151366	71151366	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacaacaagtttgcctccttCatagacaaggtatggttcct	7	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71151366	A	A	71151366	1	1	81	0	1	0	0	0	0	0	0	0	9093	841	29	3		3	LRRC49	15	71151366	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	19134155	71151366	31380026	250	85829											
DNAH3	55567	broad.mit.edu	37	chr16	21145489	21145489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttctctatgctgtcagGgctacccccactgtgcacag	8	14	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21145489	T	T	21145489	1	4	81	0	1	0	0	0	0	0	0	0	4643	1247	43	2		2	DNAH3	16	21145489	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08		21145489	69209264	251	85830											
FAM92B	339145	broad.mit.edu	37	chr16	85144051	85144051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacggtattctccatcacCctcacctggctgtccctgtg	8	17	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85144051	A	A	85144051	3	1	81	1	0	0	0	0	1	0	0	0	5710	622	22	2	906	2	FAM92B	16	85144051	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	63998562	85144051	5210702	252	85831											
TRPV3	162514	broad.mit.edu	37	chr17	3435878	3435879	+	Intron	DNP	CC	AG	AG													gtgaatccccagtaaggcccCcggggctgagagggtggcag							TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	3435879	AG	AG	3435878	1	1	81	0	1	0	0	0	0	0	0	0	16722	638	22	2		2	TRPV3	17	3435878	Intron	DNP	CC	TCGA-17-Z052-01A-01W-0747-08		3435878	77759332	253	85832											
TP53	7157	broad.mit.edu	37	chr17	7577570	7577570	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccatgcaggaactgttacaCatgtagttgtagtggatggt	12	7	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7577570	G	G	7577570	3	3	81	1	0	0	0	0	1	0	0	0	16505	478	17	4	579	4	TP53	17	7577570	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	4141692	7577570	73617640	254	85833											
PIK3R5	23533	broad.mit.edu	37	chr17	8792443	8792443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgggtgtcaccagggcCccggctccttaccaaagctg	13	14	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8792443	A	A	8792443	1	1	81	0	1	0	0	0	0	0	0	0	12017	638	22	2		2	PIK3R5	17	8792443	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1214873	8792443	72402767	255	85834											
MYH1	4619	broad.mit.edu	37	chr17	10399401	10399401	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcaggttggctctgcgctCcaccatagccagctgttcct	10	15	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10399401	A	A	10399401	4	1	81	1	0	0	0	0	0	1	0	0	10123	864	30	3	808	3	MYH1	17	10399401	Nonsense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1606958	10399401	70795809	256	85835											
RAI1	10743	broad.mit.edu	37	chr17	17698662	17698662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggaggacccccctggGgagaaggtggcctcgttgcc	17	12	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17698662	T	T	17698662	2	4	81	1	0	0	0	0	0	0	0	1	13115	1219	43	2		2	RAI1	17	17698662	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	7299261	17698662	63496548	257	85836											
KRT35	3886	broad.mit.edu	37	chr17	39636079	39636079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaagaaaggacattccaCttgttggagctccctaaagc	9	10	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39636079	A	A	39636079	1	1	81	0	1	0	0	0	0	0	0	0	8543	580	20	3		3	KRT35	17	39636079	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	21937417	39636079	41559131	258	85837											
KRT9	3857	broad.mit.edu	37	chr17	39727998	39727998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccgcctaaactactggCactaaaaccacccccagatc	5	18	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39727998	A	A	39727998	3	1	81	1	0	0	0	0	1	0	0	0	8572	710	25	3	1652	3	KRT9	17	39727998	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	91919	39727998	41467212	259	85838											
TTC25	83538	broad.mit.edu	37	chr17	40104711	40104711	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgcgactccacatatttTcagaattacacttaaatttc	3	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40104711	C	C	40104711	1	2	81	0	1	0	0	0	0	0	0	0	16819	1798	62	5		5	TTC25	17	40104711	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	376713	40104711	41090499	260	85839											
CNP	1267	broad.mit.edu	37	chr17	40125779	40125779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggaggtgggcgagctaaGccggggcaagctctattcct	16	10	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40125779	T	T	40125779	3	4	81	1	0	0	0	0	1	0	0	0	3658	971	34	3	1117	3	CNP	17	40125779	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	21068	40125779	41069431	261	85840											
HOXB1	3211	broad.mit.edu	37	chr17	46607311	46607311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcttccctcctcccgggGctggctctggacctccattt	9	18	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46607311	T	T	46607311	1	4	81	0	1	0	0	0	0	0	0	0	7366	1218	42	3		3	HOXB1	17	46607311	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	6481532	46607311	34587899	262	85841											
CACNA1G	8913	broad.mit.edu	37	chr17	48650200	48650200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacaacattggctatgcctgGatcgccatcttccaggtggg	12	11	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48650200	T	T	48650200	3	4	81	1	0	0	0	0	1	0	0	0	2570	1183	41	3	1054	3	CACNA1G	17	48650200	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2042889	48650200	32545010	263	85842											
OTOP2	92736	broad.mit.edu	37	chr17	72929385	72929385	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctagaaggatgggccgccatCtagccacggcccagcaaaac	11	14	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72929385	G	G	72929385	1	3	81	0	1	0	0	0	0	0	0	0	11400	928	32	4		4	OTOP2	17	72929385	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	24279185	72929385	8265825	264	85843											
GNAL	2774	broad.mit.edu	37	chr18	11752922	11752922	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgtcaatgggtttaatccCgagtaagaatgttcagtttg	10	7	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11752922	T	T	11752922	2	4	81	1	0	0	0	0	0	0	0	1	6571	639	23	4		4	GNAL	18	11752922	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08		11752922	66324326	265	85844											
SOCS6	9306	broad.mit.edu	37	chr18	67992312	67992312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcactacagtcccgcgccGtggcctctgcggcccacaaa	9	18	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67992312	T	T	67992312	2	4	81	1	0	0	0	0	0	0	0	1	15032	1132	40	3		3	SOCS6	18	67992312	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	56239390	67992312	10084936	266	85845											
TSHZ1	10194	broad.mit.edu	37	chr18	72998360	72998360	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcaaaaccaagcattaccAgaaagtgcctctgaaggagc	9	10	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72998360	T	T	72998360	3	4	81	1	0	0	0	0	1	0	0	0	16748	188	7	5	865	5	TSHZ1	18	72998360	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	5006048	72998360	5078888	267	85846											
NFIC	4782	broad.mit.edu	37	chr19	3452466	3452466	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaagtaacccccgcttccCactgtctccgcagggatcgc	8	19	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3452466	G	G	3452466	1	3	81	0	1	0	0	0	0	0	0	0	10467	609	21	4		4	NFIC	19	3452466	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08		3452466	55676517	268	85847											
ZNRF4	148066	broad.mit.edu	37	chr19	5455970	5455970	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcaaccgctctctgggCgccatcgtgctgatccgccg	13	16	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5455970	A	A	5455970	2	1	81	1	0	0	0	0	0	0	0	1	18343	755	27	3		3	ZNRF4	19	5455970	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2003504	5455970	53673013	269	85848											
MUC16	94025	broad.mit.edu	37	chr19	9003351	9003351	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacactggtgttcttgaacaAgggcataagctgtggaagag	14	6	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9003351	G	G	9003351	2	3	81	1	0	0	0	0	0	0	0	1	10067	69	3	5		5	MUC16	19	9003351	Silent	SNP	A	TCGA-17-Z052-01A-01W-0747-08	3547381	9003351	50125632	270	85849											
ZNF560	147741	broad.mit.edu	37	chr19	9583963	9583963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaaatgatacattaatGgaagaggctcaggccaggca	12	6	1	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9583963	T	T	9583963	1	4	81	0	1	0	0	0	0	0	0	0	18118	1363	47	2		2	ZNF560	19	9583963	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	580612	9583963	49545020	271	85850											
ZNF69	7620	broad.mit.edu	37	chr19	12014537	12014537	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggatgacatattccttccCtcagtccattagtgaaccag	7	11	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12014537	G	G	12014537	1	3	81	0	1	0	0	0	0	0	0	0	18222	696	24	4		4	ZNF69	19	12014537	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2430574	12014537	47114446	272	85851											
C19orf57	79173	broad.mit.edu	37	chr19	14015675	14015675	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatttgaatgaacgtacCtgaggtccgcagcttcttcc	9	12	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14015675	A	A	14015675	4	1	81	1	0	0	0	0	0	1	0	0	1958	695	24	2	1910	2	C19orf57	19	14015675	Nonsense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	2001138	14015675	45113308	273	85852											
GRAMD1A	57655	broad.mit.edu	37	chr19	35501038	35501038	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagatcctgctccagggccGcctctacctctctgagaact	9	15	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35501038	A	A	35501038	3	1	81	1	0	0	0	0	1	0	0	0	6813	1087	38	4	386	4	GRAMD1A	19	35501038	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	21485363	35501038	23627945	274	85853											
CD22	933	broad.mit.edu	37	chr19	35836083	35836083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatcccagcactttgggaGgctgaggcaggtggatcacc	14	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35836083	T	T	35836083	1	4	81	0	1	0	0	0	0	0	0	0	3015	1015	35	2		2	CD22	19	35836083	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	335045	35836083	23292900	275	85854											
KIRREL2	84063	broad.mit.edu	37	chr19	36349539	36349539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagcagagcccagggagcCcaggggcatggtcaattgga	16	9	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36349539	A	A	36349539	1	1	81	0	1	0	0	0	0	0	0	0	8396	638	22	2		2	KIRREL2	19	36349539	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	513456	36349539	22779444	276	85855											
MEGF8	1954	broad.mit.edu	37	chr19	42872599	42872599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatccccatcccctcccccCcatacagtgtctgagccctt	5	21	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42872599	A	A	42872599	1	1	81	0	1	0	0	0	0	0	0	0	9556	638	22	2		2	MEGF8	19	42872599	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6523060	42872599	16256384	277	85856											
SYNGR4	23546	broad.mit.edu	37	chr19	48877030	48877030	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtgagcccccaggaccccCaacccagagctgcccctcct	9	20	0	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48877030	G	G	48877030	1	3	81	0	1	0	0	0	0	0	0	0	15570	609	21	4		4	SYNGR4	19	48877030	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6004431	48877030	10251953	278	85857											
HAS1	3036	broad.mit.edu	37	chr19	52219403	52219403	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctcacttgatagagcccAttgtctggtgagttactttg	10	8	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52219403	T	T	52219403	1	4	81	0	1	0	0	0	0	0	0	0	7027	232	8	5		5	HAS1	19	52219403	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	3342373	52219403	6909580	279	85858											
ZNF677	342926	broad.mit.edu	37	chr19	53754779	53754779	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacagtgaaccaagaataTaacttttacctgagaaagag	7	6	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53754779	A	A	53754779	1	1	81	0	1	0	0	0	0	0	0	0	18211	1421	49	5		5	ZNF677	19	53754779	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	1535376	53754779	5374204	280	85859											
MYADM	91663	broad.mit.edu	37	chr19	54377404	54377404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccctggagtggtgcgtGgcggtgtacgccatctgctt	16	12	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54377404	T	T	54377404	2	4	81	1	0	0	0	0	0	0	0	1	10100	1335	47	2		2	MYADM	19	54377404	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	622625	54377404	4751579	281	85860											
LILRA4	23547	broad.mit.edu	37	chr19	54848136	54848136	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaccacgagctccaggggctCactggggtgagacagcaggt	16	11	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54848136	T	T	54848136	3	4	81	1	0	0	0	0	1	0	0	0	8859	835	29	4	280	4	LILRA4	19	54848136	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	470732	54848136	4280847	282	85861											
PPP1R12C	54776	broad.mit.edu	37	chr19	55607203	55607203	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacctccgggccctcccaGcctcacaggacctctcaggg	9	21	2	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55607203	A	A	55607203	1	1	81	0	1	0	0	0	0	0	0	0	12457	986	34	4		4	PPP1R12C	19	55607203	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	759067	55607203	3521780	283	85862											
ZNF552	79818	broad.mit.edu	37	chr19	58319635	58319635	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtagagctgtgggtaaAtgacttcccacaatcactgc	10	9	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58319635	G	G	58319635	3	3	81	1	0	0	0	0	1	0	0	0	18111	101	4	5	230	5	ZNF552	19	58319635	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	2712432	58319635	809348	284	85863											
NCOA6	23054	broad.mit.edu	37	chr20	33330836	33330836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgaccatgacaggcacaCtgccactctgttgcatgggc	11	13	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33330836	A	A	33330836	3	1	81	1	0	0	0	0	1	0	0	0	10328	565	20	3	2987	3	NCOA6	20	33330836	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08		33330836	29694684	285	85864											
SAMHD1	25939	broad.mit.edu	37	chr20	35563504	35563504	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctcccagctgtttgatgTatcgaagacgttgaaattga	9	9	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35563504	A	A	35563504	3	1	81	1	0	0	0	0	1	0	0	0	13939	1638	57	5	1495	5	SAMHD1	20	35563504	Missense_Mutation	SNP	T	TCGA-17-Z052-01A-01W-0747-08	2232668	35563504	27462016	286	85865											
BPI	671	broad.mit.edu	37	chr20	36946906	36946906	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggatgaagatcaaggataGaaaggaacagaaatgggagg	15	3	1	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36946906	A	A	36946906	1	1	81	0	1	0	0	0	0	0	0	0	1499	957	33	4		4	BPI	20	36946906	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	1383402	36946906	26078614	287	85866											
CDH4	1002	broad.mit.edu	37	chr20	60503480	60503480	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaccatcacccgcctgaaCggtgagcccgccttaggcca	11	16	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60503480	T	T	60503480	2	4	81	1	0	0	0	0	0	0	0	1	3142	550	19	4		4	CDH4	20	60503480	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	23556574	60503480	2522040	288	85867											
MYT1	4661	broad.mit.edu	37	chr20	62868054	62868054	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgggtgccagggtaagtgaGagctgtgcaccttttgtgct	15	8	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62868054	A	A	62868054	1	1	81	0	1	0	0	0	0	0	0	0	10200	957	33	4		4	MYT1	20	62868054	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	2364574	62868054	157466	289	85868											
TPTE	7179	broad.mit.edu	37	chr21	10941866	10941866	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttatgactacacagtctaCattcactaagaaatgagtat	5	8	2	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10941866	T	T	10941866	1	4	81	0	1	0	0	0	0	0	0	0	16554	493	17	4		4	TPTE	21	10941866	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08		10941866	37188029	290	85869											
TPTE	7179	broad.mit.edu	37	chr21	10942003	10942003	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcatcactattacaaacAttattatagatttcatacaa	1	7	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10942003	C	C	10942003	1	2	81	0	1	0	0	0	0	0	0	0	16554	232	8	5		5	TPTE	21	10942003	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08	137	10942003	37187892	291	85870											
CYYR1	116159	broad.mit.edu	37	chr21	27840808	27840808	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccattggcacatgttctgttCtgggagatagattatttcct	9	8	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27840808	A	A	27840808	1	1	81	0	1	0	0	0	0	0	0	0	4244	928	32	3		3	CYYR1	21	27840808	3'UTR	SNP	C	TCGA-17-Z052-01A-01W-0747-08	16898805	27840808	20289087	292	85871											
CLDN14	23562	broad.mit.edu	37	chr21	37858757	37858757	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccgagggccaaggccagctGaggatcagcactgggatcta	14	12	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37858757	C	C	37858757	1	2	81	0	1	0	0	0	0	0	0	0	3506	1305	45	4		4	CLDN14	21	37858757	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	10017949	37858757	10271138	293	85872											
TUBA8	51807	broad.mit.edu	37	chr22	18570625	18570625	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccctgtctctaaaaaaaAcaaaacaaaaccaactatgt	3	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18570625	G	G	18570625	1	3	81	0	1	0	0	0	0	0	0	0	16876	58	2	5		5	TUBA8	22	18570625	Intron	SNP	A	TCGA-17-Z052-01A-01W-0747-08		18570625	32733941	294	85873											
MYH9	4627	broad.mit.edu	37	chr22	36717765	36717765	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtcatgcctcccctccGgatccaggactcttatccca	8	16	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36717765	A	A	36717765	1	1	81	0	1	0	0	0	0	0	0	0	10136	1131	39	4		4	MYH9	22	36717765	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	18147140	36717765	14586801	295	85874											
GRAP2	9402	broad.mit.edu	37	chr22	40355937	40355937	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaacagcacctggtctcTctctgctccctactgtacag	6	15	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40355937	C	C	40355937	1	2	81	0	1	0	0	0	0	0	0	0	6820	1566	54	5		5	GRAP2	22	40355937	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	3638172	40355937	10948629	296	85875											
CPT1B	1375	broad.mit.edu	37	chr22	51014749	51014749	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcatccaacaaggggcGcacagactctaggtactgtc	9	13	3	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51014749	A	A	51014749	3	1	81	1	0	0	0	0	1	0	0	0	3864	1087	38	4	1797	4	CPT1B	22	51014749	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	10658812	51014749	289817	297	85876											
FRMPD4	9758	broad.mit.edu	37	chrX	12734337	12734337	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagatcacagacagcaccAtgtgtccaaaagagcaccgg	11	11	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12734337	T	T	12734337	3	4	81	1	0	0	0	0	1	0	0	0	6119	217	8	5	1817	5	FRMPD4	23	12734337	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08		12734337	142536223	298	85877											
NHS	4810	broad.mit.edu	37	chrX	17750408	17750408	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttttcctcgaagagctttGccacctcagcatcagcaagg	9	13	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17750408	C	C	17750408	3	2	81	1	0	0	0	0	1	0	0	0	10506	1319	46	4	4852	4	NHS	23	17750408	Missense_Mutation	SNP	G	TCGA-17-Z052-01A-01W-0747-08	5016071	17750408	137520152	299	85878											
PHKA2	5256	broad.mit.edu	37	chrX	18972546	18972546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattctattagagaagagaCacaaaatggctcagtgccat	10	7	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18972546	A	A	18972546	1	1	81	0	1	0	0	0	0	0	0	0	11939	493	17	3		3	PHKA2	23	18972546	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1222138	18972546	136298014	300	85879											
CXorf23	256643	broad.mit.edu	37	chrX	19984846	19984846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctaccaaaaacagttgCttttcctaggatccctcggc	7	13	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19984846	A	A	19984846	1	1	81	0	1	0	0	0	0	0	0	0	4136	812	28	3		3	CXorf23	23	19984846	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1012300	19984846	135285714	301	85880											
CNKSR2	22866	broad.mit.edu	37	chrX	21545096	21545096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctctacattccccctcctCctgcagaaccatatattccc	2	18	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21545096	A	A	21545096	3	1	81	1	0	0	0	0	1	0	0	0	3639	855	30	3	1107	3	CNKSR2	23	21545096	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	1560250	21545096	133725464	302	85881											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29938087	29938087	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttaaggagcatcttggGgaacaggaagtttccatctc	10	8	3	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29938087	T	T	29938087	2	4	81	1	0	0	0	0	0	0	0	1	7731	1219	43	2		2	IL1RAPL1	23	29938087	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	8392991	29938087	125332473	303	85882											
DMD	1756	broad.mit.edu	37	chrX	31191766	31191766	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacagataccatccattaaTggagaaaaaacccaccacac	4	13	1	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31191766	A	A	31191766	1	1	81	0	1	0	0	0	0	0	0	0	4620	1479	51	5		5	DMD	23	31191766	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	1253679	31191766	124078794	304	85883											
CASK	8573	broad.mit.edu	37	chrX	41586214	41586214	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatactgtaccaaaaataatTttaatattaaatatctgcaa	2	5	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41586214	C	C	41586214	1	2	81	0	1	0	0	0	0	0	0	0	2691	1856	64	5		5	CASK	23	41586214	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	10394448	41586214	113684346	305	85884											
SSX3	10214	broad.mit.edu	37	chrX	48209402	48209402	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaagccagtgggattgttCctgaattgcttcctcttacc	11	10	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48209402	A	A	48209402	1	1	81	0	1	0	0	0	0	0	0	0	15323	870	30	3		3	SSX3	23	48209402	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	6623188	48209402	107061158	306	85885											
RBM3	5935	broad.mit.edu	37	chrX	48435468	48435468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattacagagacaattatgaCaactgaaatgagacatgcac	7	7	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48435468	A	A	48435468	3	1	81	1	0	0	0	0	1	0	0	0	13237	477	17	3	486	3	RBM3	23	48435468	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	226066	48435468	106835092	307	85886											
CACNA1F	778	broad.mit.edu	37	chrX	49074269	49074269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgtagaatttcccctGtagagaggatgtctgtcaag	13	7	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49074269	T	T	49074269	1	4	81	0	1	0	0	0	0	0	0	0	2569	1392	48	3		3	CACNA1F	23	49074269	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	638801	49074269	106196291	308	85887											
KIAA2022	340533	broad.mit.edu	37	chrX	73960537	73960537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggctgctctccttcccCaaggcccaatctccagaaag	8	17	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73960537	A	A	73960537	3	1	81	1	0	0	0	0	1	0	0	0	8339	593	21	2	703	2	KIAA2022	23	73960537	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	24886268	73960537	81310023	309	85888											
PCDH11X	27328	broad.mit.edu	37	chrX	91368616	91368616	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagccagtccaccttcctcCgggtattgatgaagatgact	10	11	0	5			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91368616	T	T	91368616	1	4	81	0	1	0	0	0	0	0	0	0	11602	667	23	4		4	PCDH11X	23	91368616	Intron	SNP	C	TCGA-17-Z052-01A-01W-0747-08	17408079	91368616	63901944	310	85889											
SYTL4	94121	broad.mit.edu	37	chrX	99956502	99956502	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaccattgctttcctgtAtgcggcagtcccgacacacc	9	14	0	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99956502	G	G	99956502	3	3	81	1	0	0	0	0	1	0	0	0	15604	449	16	5	1797	5	SYTL4	23	99956502	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	8587886	99956502	55314058	311	85890											
BTK	695	broad.mit.edu	37	chrX	100615129	100615129	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatagttactaggaatgtaGccttcctgcctgtgaaggaa	10	8	0	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100615129	A	A	100615129	2	1	81	1	0	0	0	0	0	0	0	1	1567	958	34	4		4	BTK	23	100615129	Silent	SNP	G	TCGA-17-Z052-01A-01W-0747-08	658627	100615129	54655431	312	85891											
ATP1B4	23439	broad.mit.edu	37	chrX	119512371	119512371	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctaaaaatgctcatctaggGacaggtcacggctgagctct	10	11	4	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119512371	T	T	119512371	1	4	81	0	1	0	0	0	0	0	0	0	1139	1189	41	3		3	ATP1B4	23	119512371	Intron	SNP	G	TCGA-17-Z052-01A-01W-0747-08	18897242	119512371	35758189	313	85892											
ODZ1	10178	broad.mit.edu	37	chrX	123525995	123525995	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattccattttttcattccaCgttcctctttgaataaacgt	3	10	2	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123525995	T	T	123525995	2	4	81	1	0	0	0	0	0	0	0	1	10929	523	19	4		4	ODZ1	23	123525995	Silent	SNP	C	TCGA-17-Z052-01A-01W-0747-08	4013624	123525995	31744565	314	85893											
GPR112	139378	broad.mit.edu	37	chrX	135429050	135429050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaactacaatgaccacagCattggtaccacctttggatc	6	13	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135429050	A	A	135429050	3	1	81	1	0	0	0	0	1	0	0	0	6694	710	25	3	3195	3	GPR112	23	135429050	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	11903055	135429050	19841510	315	85894											
CD40LG	959	broad.mit.edu	37	chrX	135730549	135730549	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgctgtgtatcttcatAgaaggttggacaaggtaaga	11	4	2	2			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135730549	G	G	135730549	3	3	81	1	0	0	0	0	1	0	0	0	3046	412	15	5	144	5	CD40LG	23	135730549	Missense_Mutation	SNP	A	TCGA-17-Z052-01A-01W-0747-08	301499	135730549	19540011	316	85895											
MAGEC3	139081	broad.mit.edu	37	chrX	140985530	140985530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagatatggaagacagagCccaggccataattgacacca	10	9	0	4			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140985530	A	A	140985530	3	1	81	1	0	0	0	0	1	0	0	0	9274	739	26	3	2241	3	MAGEC3	23	140985530	Missense_Mutation	SNP	C	TCGA-17-Z052-01A-01W-0747-08	5254981	140985530	14285030	317	85896											
IDS	3423	broad.mit.edu	37	chrX	148607186	148607186	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactcagctaccaagctgttTgctaggggcctcgggagggc	15	11	1	0			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148607186	C	C	148607186	1	2	81	0	1	0	0	0	0	0	0	0	7573	1827	63	5		5	IDS	23	148607186	Intron	SNP	T	TCGA-17-Z052-01A-01W-0747-08	7621656	148607186	6663374	318	85897											
TKTL1	8277	broad.mit.edu	37	chrX	153556305	153556305	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggatcactacccgcaagGtgtgtgtgggcattgagaat	15	7	1	1			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153556305	A	A	153556305	5	1	81	1	0	0	0	0	0	0	1	0	16058	1275	44	4	1665	4	TKTL1	23	153556305	Splice_Site	SNP	G	TCGA-17-Z052-01A-01W-0747-08	4949119	153556305	1714255	319	85898											
F8	2157	broad.mit.edu	37	chrX	154132272	154132272	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatagaatggatgttttcAttgctgcccatgctgagcag	11	7	1	3			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154132272	G	G	154132272	2	3	81	1	0	0	0	0	0	0	0	1	5393	214	8	5		5	F8	23	154132272	Silent	SNP	A	TCGA-17-Z052-01A-01W-0747-08	575967	154132272	1138288	320	85899											
NADK	65220	broad.mit.edu	37	chr1	1685608	1685608	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggccccggccgcggccGcatacgccgtgctgcccgtc	15	18	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1685608	A	A	1685608	3	1	82	1	0	0	0	0	1	0	0	0	10231	1087	38	4	369	4	NADK	1	1685608	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08		1685608	247565013	1	85900											
MMEL1	79258	broad.mit.edu	37	chr1	2526849	2526849	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccccactgcggatggagtCagcccgggggccggtcagtg	17	13	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2526849	T	T	2526849	1	4	82	0	1	0	0	0	0	0	0	0	9739	841	29	4		4	MMEL1	1	2526849	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	841241	2526849	246723772	2	85901											
DNAJC11	55735	broad.mit.edu	37	chr1	6740933	6740933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatcgaatatctgttacCaggatgtttctacaaagtcc	6	8	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6740933	A	A	6740933	1	1	82	0	1	0	0	0	0	0	0	0	4670	609	21	2		2	DNAJC11	1	6740933	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4214084	6740933	242509688	3	85902											
MTOR	2475	broad.mit.edu	37	chr1	11319410	11319410	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaaactgctgcaggacgctCacattgctagatgtggtggc	13	10	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11319410	A	A	11319410	2	1	82	1	0	0	0	0	0	0	0	1	10048	813	29	3		3	MTOR	1	11319410	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4578477	11319410	237931211	4	85903											
PRAMEF12	390999	broad.mit.edu	37	chr1	12835253	12835253	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagagatctttcgagctgtGctggaggggcttgatgcact	14	8	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12835253	T	T	12835253	2	4	82	1	0	0	0	0	0	0	0	1	12529	1306	46	3		3	PRAMEF12	1	12835253	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1515843	12835253	236415368	5	85904											
DDI2	84301	broad.mit.edu	37	chr1	15976327	15976327	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacggcaccaggtaattaaGagcttcacttattttttttg	7	7	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15976327	A	A	15976327	1	1	82	0	1	0	0	0	0	0	0	0	4362	957	33	4		4	DDI2	1	15976327	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3141074	15976327	233274294	6	85905											
SPEN	23013	broad.mit.edu	37	chr1	16248702	16248702	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataacatttttccatcattaAaatttgaaacttgcatcaaa	2	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16248702	T	T	16248702	1	4	82	0	1	0	0	0	0	0	0	0	15156	29	1	5		5	SPEN	1	16248702	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	272375	16248702	233001919	7	85906											
ARHGEF19	128272	broad.mit.edu	37	chr1	16528322	16528322	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcctgggggctggaggGgcacaaggctgagatccatc	16	11	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16528322	C	C	16528322	3	2	82	1	0	0	0	0	1	0	0	0	904	1232	43	4	319	4	ARHGEF19	1	16528322	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	279620	16528322	232722299	8	85907											
EIF4G3	8672	broad.mit.edu	37	chr1	21187009	21187009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcgagatacccaattgCactataaaagcagaaaataa	5	9	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21187009	A	A	21187009	3	1	82	1	0	0	0	0	1	0	0	0	5080	724	25	3	1868	3	EIF4G3	1	21187009	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4658687	21187009	228063612	9	85908											
LDLRAD2	401944	broad.mit.edu	37	chr1	22139093	22139093	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccaccatccttagagacTatgtttccccagtcagcact	5	17	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22139093	C	C	22139093	1	2	82	0	1	0	0	0	0	0	0	0	8778	1537	53	5		5	LDLRAD2	1	22139093	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	952084	22139093	227111528	10	85909											
ZBTB40	9923	broad.mit.edu	37	chr1	22848811	22848811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagccctgttactcttcaGccttggagagccaaccattt	7	15	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22848811	T	T	22848811	1	4	82	0	1	0	0	0	0	0	0	0	17668	986	34	3		3	ZBTB40	1	22848811	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	709718	22848811	226401810	11	85910											
FAM54B	56181	broad.mit.edu	37	chr1	26152909	26152909	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatgcccgggtcaggtagttGaggcagtagctggtctgcta	15	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26152909	C	C	26152909	1	2	82	0	1	0	0	0	0	0	0	0	5634	1305	45	4		4	FAM54B	1	26152909	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3304098	26152909	223097712	12	85911											
NUDC	10726	broad.mit.edu	37	chr1	27272209	27272209	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagacggggttgggggaccGtgggtgcctgggggcttaga	22	6	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27272209	C	C	27272209	1	2	82	0	1	0	0	0	0	0	0	0	10816	1160	40	4		4	NUDC	1	27272209	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1119300	27272209	221978412	13	85912											
AHDC1	27245	broad.mit.edu	37	chr1	27876724	27876725	+	Frame_Shift_Ins	INS	-	T	T													ctgggtgtccagcagcggggINScggtgagcaccgtccagcgc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27876725	T	T	27876724	7	5	82	1	0	1	1	0	0	0	0	0	412	1203	42	0	2912	0	AHDC1	1	27876724	Frame_Shift_Ins	INS	-	TCGA-17-Z053-01A-01W-0747-08	604515	27876724	221373897	14	85913											
COL16A1	1307	broad.mit.edu	37	chr1	32156786	32156786	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accacactcccacctatgctCaccttgtctcccttggggcc	6	19	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32156786	A	A	32156786	1	1	82	0	1	0	0	0	0	0	0	0	3705	841	29	3		3	COL16A1	1	32156786	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4280062	32156786	217093835	15	85914											
SPOCD1	90853	broad.mit.edu	37	chr1	32280141	32280141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctctccaggcccagacCcagtgtcttttggagaggga	13	12	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32280141	A	A	32280141	3	1	82	1	0	0	0	0	1	0	0	0	15196	623	22	2	2916	2	SPOCD1	1	32280141	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	123355	32280141	216970480	16	85915											
TSSK3	81629	broad.mit.edu	37	chr1	32829703	32829703	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgacacagacatccccaagaTgctgtggcagcagcagaagg	12	12	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32829703	C	C	32829703	3	2	82	1	0	0	0	0	1	0	0	0	16795	1464	51	5	659	5	TSSK3	1	32829703	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	549562	32829703	216420918	17	85916											
PSMB2	5690	broad.mit.edu	37	chr1	36070696	36070696	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaccaaactctatccctggTagcaacttcacatctggtta	5	13	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36070696	C	C	36070696	1	2	82	0	1	0	0	0	0	0	0	0	12783	1653	57	5		5	PSMB2	1	36070696	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	3240993	36070696	213179925	18	85917											
CLDN19	149461	broad.mit.edu	37	chr1	43203813	43203813	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacagcagctggatcctgtCcccacttcccccgccaggtg	11	17	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43203813	A	A	43203813	1	1	82	0	1	0	0	0	0	0	0	0	3511	870	30	3		3	CLDN19	1	43203813	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7133117	43203813	206046808	19	85918											
JAK1	3716	broad.mit.edu	37	chr1	65351878	65351878	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctacagcctcaagaacaCggtttcatcaatttttttaa	5	11	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65351878	T	T	65351878	1	4	82	0	1	0	0	0	0	0	0	0	8007	551	19	4		4	JAK1	1	65351878	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	22148065	65351878	183898743	20	85919											
IL23R	149233	broad.mit.edu	37	chr1	67685533	67685533	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaggcaggaagattgcttGagcctaggagtttgagactg	14	7	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67685533	T	T	67685533	1	4	82	0	1	0	0	0	0	0	0	0	7746	1305	45	3		3	IL23R	1	67685533	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2333655	67685533	181565088	21	85920											
C1orf173	127254	broad.mit.edu	37	chr1	75038553	75038553	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaggtctatggatgcttcCtcttcactttctccgacatc	6	13	5	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75038553	G	G	75038553	3	3	82	1	0	0	0	0	1	0	0	0	2034	680	24	4	1755	4	C1orf173	1	75038553	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7353020	75038553	174212068	22	85921											
C1orf173	127254	broad.mit.edu	37	chr1	75107014	75107014	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgtttaatattactcaCcagtgctaacggactggaat	9	7	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75107014	T	T	75107014	5	4	82	1	0	0	0	0	0	0	1	0	2034	521	18	4	4187	4	C1orf173	1	75107014	Splice_Site	SNP	C	TCGA-17-Z053-01A-01W-0747-08	68461	75107014	174143607	23	85922											
SLC44A5	204962	broad.mit.edu	37	chr1	75677414	75677414	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatactttgtactgagaCttaaacaagttttattaaat	5	6	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75677414	T	T	75677414	1	4	82	0	1	0	0	0	0	0	0	0	14753	580	20	4		4	SLC44A5	1	75677414	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	570400	75677414	173573207	24	85923											
SLC44A5	204962	broad.mit.edu	37	chr1	76047962	76047962	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaagatgcaggccaacaaTgccaaggccatgagtgcacg	12	10	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76047962	C	C	76047962	1	2	82	0	1	0	0	0	0	0	0	0	14753	1479	51	5		5	SLC44A5	1	76047962	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	370548	76047962	173202659	25	85924											
MSH4	4438	broad.mit.edu	37	chr1	76349615	76349615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccaagaacagtttggagCagattctgttacctaaaagt	8	8	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76349615	A	A	76349615	1	1	82	0	1	0	0	0	0	0	0	0	9966	725	25	3		3	MSH4	1	76349615	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	301653	76349615	172901006	26	85925											
MSH4	4438	broad.mit.edu	37	chr1	76365200	76365200	+	Intron	DEL	G	-	-													gttcagaagtgcctctagaaGggaagtttaaatctgtgact							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76365200	-	-	76365200	6	5	82	0	1	1	0	1	0	0	0	0	9966	1015	35	0		0	MSH4	1	76365200	Intron	DEL	G	TCGA-17-Z053-01A-01W-0747-08	15585	76365200	172885421	27	85926											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77094628	77094628	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctgtacactctcagatGtggatggtgactctgctagt	11	9	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77094628	T	T	77094628	1	4	82	0	1	0	0	0	0	0	0	0	15343	1392	48	3		3	ST6GALNAC3	1	77094628	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	729428	77094628	172155993	28	85927											
AK5	26289	broad.mit.edu	37	chr1	78001585	78001585	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcggcagacaccatgacCaaccgccttctccaaaggag	9	15	1	2	rs139378577	byFrequency	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78001585	A	A	78001585	2	1	82	1	0	0	0	0	0	0	0	1	443	581	21	2		2	AK5	1	78001585	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	906957	78001585	171249036	29	85928											
GIPC2	54810	broad.mit.edu	37	chr1	78601527	78601527	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacacctttactaactctGgtttaatttcatgtgtatgg	8	7	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78601527	A	A	78601527	1	1	82	0	1	0	0	0	0	0	0	0	6457	1363	47	4		4	GIPC2	1	78601527	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	599942	78601527	170649094	30	85929											
LPHN2	23266	broad.mit.edu	37	chr1	81969250	81969250	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcacggagcccacgtcgacGagcaccatttggccagacat	10	15	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81969250	T	T	81969250	1	4	82	0	1	0	0	0	0	0	0	0	9003	1073	37	3		3	LPHN2	1	81969250	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3367723	81969250	167281371	31	85930											
GBP4	115361	broad.mit.edu	37	chr1	89651901	89651901	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgagattttagtgaaacaTacaacttttgtgtttccttc	6	6	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89651901	A	A	89651901	1	1	82	0	1	0	0	0	0	0	0	0	6338	1421	49	5		5	GBP4	1	89651901	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	7682651	89651901	159598720	32	85931											
GBP5	115362	broad.mit.edu	37	chr1	89730409	89730409	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttggtctacatccttgaaaGagtttttcatgaagacttca	7	7	3	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89730409	C	C	89730409	3	2	82	1	0	0	0	0	1	0	0	0	6339	942	33	4	671	4	GBP5	1	89730409	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	78508	89730409	159520212	33	85932											
TGFBR3	7049	broad.mit.edu	37	chr1	92224104	92224104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcctttatgaaaagtttGgcaaagtttaaggaccatta	8	5	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92224104	T	T	92224104	1	4	82	0	1	0	0	0	0	0	0	0	15946	1363	47	2		2	TGFBR3	1	92224104	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2493695	92224104	157026517	34	85933											
COL11A1	1301	broad.mit.edu	37	chr1	103477844	103477844	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatttttttaatggaaacaaCagcaagcatgaaaacatacc	6	7	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103477844	G	G	103477844	1	3	82	0	1	0	0	0	0	0	0	0	3699	493	17	4		4	COL11A1	1	103477844	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	11253740	103477844	145772777	35	85934											
GSTM4	2948	broad.mit.edu	37	chr1	110201681	110201681	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccgtatatttgagccCaactgcttggacgcctttcc	7	15	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110201681	T	T	110201681	2	4	82	1	0	0	0	0	0	0	0	1	6906	581	21	4		4	GSTM4	1	110201681	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6723837	110201681	139048940	36	85935											
MOV10	4343	broad.mit.edu	37	chr1	113241553	113241553	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctcgagctctccctgagCctctcactcctggagattcc	9	16	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113241553	T	T	113241553	1	4	82	0	1	0	0	0	0	0	0	0	9812	754	26	4		4	MOV10	1	113241553	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3039872	113241553	136009068	37	85936											
AMPD1	270	broad.mit.edu	37	chr1	115220124	115220124	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttggcctccaccaggtcCgcacctacctcctgcaaagc	7	18	0	0	rs141829342		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115220124	T	T	115220124	2	4	82	1	0	0	0	0	0	0	0	1	585	639	23	4		4	AMPD1	1	115220124	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1978571	115220124	134030497	38	85937											
ATP1A1	476	broad.mit.edu	37	chr1	116931735	116931735	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatctcttgttttattggCtccatttctgagaacttgtg	7	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931735	T	T	116931735	1	4	82	0	1	0	0	0	0	0	0	0	1132	812	28	4		4	ATP1A1	1	116931735	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1711611	116931735	132318886	39	85938											
ADAM30	11085	broad.mit.edu	37	chr1	120436901	120436901	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattatgatggacacaacccAaattgacgagggaatcgccc	9	11	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120436901	T	T	120436901	3	4	82	1	0	0	0	0	1	0	0	0	248	130	5	5	317	5	ADAM30	1	120436901	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3505166	120436901	128813720	40	85939											
PI4KB	5298	broad.mit.edu	37	chr1	151288800	151288800	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactttctccaacacctccTggcaggccttctgggccacc	8	17	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151288800	A	A	151288800	3	1	82	1	0	0	0	0	1	0	0	0	11969	1580	55	5	2336	5	PI4KB	1	151288800	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	30851899	151288800	97961821	41	85940											
HRNR	388697	broad.mit.edu	37	chr1	152187728	152187728	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagaggagtgacctgagCcagacccatgctgactgtaa	12	11	0	5			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152187728	T	T	152187728	3	4	82	1	0	0	0	0	1	0	0	0	7426	739	26	4	2179	4	HRNR	1	152187728	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	898928	152187728	97062893	42	85941											
FCRL3	115352	broad.mit.edu	37	chr1	157665413	157665413	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaactgaaggagacaaaaGggctgtcagaggattctgac	14	7	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157665413	A	A	157665413	1	1	82	0	1	0	0	0	0	0	0	0	5853	1015	35	4		4	FCRL3	1	157665413	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5477685	157665413	91585208	43	85942											
NCSTN	23385	broad.mit.edu	37	chr1	160318991	160318991	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcacacttattagtgaAaacttcccttggctgccctg	7	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160318991	G	G	160318991	1	3	82	0	1	0	0	0	0	0	0	0	10336	29	1	5		5	NCSTN	1	160318991	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2653578	160318991	88931630	44	85943											
HSD17B7	51478	broad.mit.edu	37	chr1	162775393	162775393	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcttctctgggtactcactGttcaccagcatcacactggc	8	15	4	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162775393	C	C	162775393	1	2	82	0	1	0	0	0	0	0	0	0	7455	1392	48	4		4	HSD17B7	1	162775393	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2456402	162775393	86475228	45	85944											
C1orf110	339512	broad.mit.edu	37	chr1	162829265	162829265	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaccttgctgcaacctctGcagttctttttggagctgcc	8	13	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162829265	A	A	162829265	4	1	82	1	0	0	0	0	0	1	0	0	2003	1328	46	4	748	4	C1orf110	1	162829265	Nonsense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	53872	162829265	86421356	46	85945											
RABGAP1L	9910	broad.mit.edu	37	chr1	174219785	174219785	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttaggtgaggcatttggaAagattaaaaattcgcattgt	10	4	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174219785	C	C	174219785	1	2	82	0	1	0	0	0	0	0	0	0	13073	29	1	5		5	RABGAP1L	1	174219785	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	11390520	174219785	75030836	47	85946											
TPR	7175	broad.mit.edu	37	chr1	186304764	186304764	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attggcacatggtcacatcaGattctactactataacatct	5	10	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186304764	A	A	186304764	1	1	82	0	1	0	0	0	0	0	0	0	16540	957	33	4		4	TPR	1	186304764	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	12084979	186304764	62945857	48	85947											
ELF3	1999	broad.mit.edu	37	chr1	201983203	201983203	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccggacatggggacaggcGctcacactcccaccgccctc	11	18	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201983203	C	C	201983203	1	2	82	0	1	0	0	0	0	0	0	0	5097	1102	38	4		4	ELF3	1	201983203	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	15678439	201983203	47267418	49	85948											
C4BPB	725	broad.mit.edu	37	chr1	207273326	207273326	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctatgaataaattttcttCttggttctgaaattggtttc	6	6	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207273326	A	A	207273326	1	1	82	0	1	0	0	0	0	0	0	0	2273	928	32	3		3	C4BPB	1	207273326	3'UTR	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5290123	207273326	41977295	50	85949											
RCOR3	55758	broad.mit.edu	37	chr1	211452489	211452489	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgagccaagatcatgccAttgcactccagcctgggcaa	10	13	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211452489	G	G	211452489	1	3	82	0	1	0	0	0	0	0	0	0	13292	232	8	5		5	RCOR3	1	211452489	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	4179163	211452489	37798132	51	85950											
CENPF	1063	broad.mit.edu	37	chr1	214816606	214816606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttgagctggaagtagcacGactccagctacaaggtctgg	12	10	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214816606	T	T	214816606	3	4	82	1	0	0	0	0	1	0	0	0	3261	1058	37	3	4967	3	CENPF	1	214816606	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3364117	214816606	34434015	52	85951											
RYR2	6262	broad.mit.edu	37	chr1	237868445	237868445	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttttaggttaaatttgctAattgtaatatgactttttta	5	4	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237868445	T	T	237868445	1	4	82	0	1	0	0	0	0	0	0	0	13880	377	13	5		5	RYR2	1	237868445	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	23051839	237868445	11382176	53	85952											
RYR2	6262	broad.mit.edu	37	chr1	237957224	237957224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggaaattggaatttgatGggctttatattacagaacag	10	5	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237957224	T	T	237957224	3	4	82	1	0	0	0	0	1	0	0	0	13880	1348	47	2	14218	2	RYR2	1	237957224	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	88779	237957224	11293397	54	85953											
ZP4	57829	broad.mit.edu	37	chr1	238053654	238053654	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttttgcagaaagatgcaaCagggctcagaaggtgaaagt	12	6	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053654	T	T	238053654	1	4	82	0	1	0	0	0	0	0	0	0	18347	493	17	4		4	ZP4	1	238053654	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	96430	238053654	11196967	55	85954											
OR2T6	254879	broad.mit.edu	37	chr1	248551473	248551473	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccatgctgaggctggcCtgtggggacaaaaccaccta	11	14	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248551473	A	A	248551473	2	1	82	1	0	0	0	0	0	0	0	1	11123	668	24	2		2	OR2T6	1	248551473	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	10497819	248551473	699148	56	85955											
ACP1	52	broad.mit.edu	37	chr2	277250	277250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgactctgactttgagacGgtgtaccagcagtgtgtcag	12	8	2	3	rs55709515	byFrequency;by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	277250	T	T	277250	2	4	82	1	0	0	0	0	0	0	0	1	162	1103	39	1		1	ACP1	2	277250	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08		277250	242922123	57	85956											
PXDN	7837	broad.mit.edu	37	chr2	1647408	1647408	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagactcacaggtcactagGagctgagttaaaatctcccc	10	11	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1647408	A	A	1647408	1	1	82	0	1	0	0	0	0	0	0	0	12955	1189	41	4		4	PXDN	2	1647408	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1370158	1647408	241551965	58	85957											
RSAD2	91543	broad.mit.edu	37	chr2	7023675	7023675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattatggtgtgctccatGggatggcattcttcttattg	11	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7023675	T	T	7023675	1	4	82	0	1	0	0	0	0	0	0	0	13806	1363	47	2		2	RSAD2	2	7023675	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5376267	7023675	236175698	59	85958											
NBAS	51594	broad.mit.edu	37	chr2	15519600	15519600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattcaagcaaaaaataactGtgccccatatagtgtagtca	6	8	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15519600	A	A	15519600	1	1	82	0	1	0	0	0	0	0	0	0	10280	1392	48	4		4	NBAS	2	15519600	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	8495925	15519600	227679773	60	85959											
DDX1	1653	broad.mit.edu	37	chr2	15739851	15739851	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcttttggtaagtggatAgactttccatcagctcattt	8	8	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15739851	T	T	15739851	1	4	82	0	1	0	0	0	0	0	0	0	4374	435	15	5		5	DDX1	2	15739851	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	220251	15739851	227459522	61	85960											
SMC6	79677	broad.mit.edu	37	chr2	17927206	17927206	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaattttcttcctttcttTtggccatcaggtctgaacaa	5	9	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17927206	C	C	17927206	3	2	82	1	0	0	0	0	1	0	0	0	14901	1841	64	5	3371	5	SMC6	2	17927206	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2187355	17927206	225272167	62	85961											
APOB	338	broad.mit.edu	37	chr2	21242544	21242544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgccatgctaggtggcCatgatgtggaaggtgagaaa	15	7	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21242544	A	A	21242544	1	1	82	0	1	0	0	0	0	0	0	0	787	609	21	2		2	APOB	2	21242544	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3315338	21242544	221956829	63	85962											
SRD5A2	6716	broad.mit.edu	37	chr2	31756524	31756524	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtttattcccattcccAaaataaataagaagacacct	4	9	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31756524	G	G	31756524	3	3	82	1	0	0	0	0	1	0	0	0	15257	131	5	5	312	5	SRD5A2	2	31756524	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	10513980	31756524	211442849	64	85963											
SPAST	6683	broad.mit.edu	37	chr2	32312665	32312665	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaagattgtatttgttTatagccatcccaaattatga	7	5	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32312665	C	C	32312665	1	2	82	0	1	0	0	0	0	0	0	0	15113	1769	61	5		5	SPAST	2	32312665	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	556141	32312665	210886708	65	85964											
LTBP1	4052	broad.mit.edu	37	chr2	33589406	33589406	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtcagaaaaaagatgtatacGaccggctgagtcaaacggta	11	7	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33589406	C	C	33589406	3	2	82	1	0	0	0	0	1	0	0	0	9160	1058	37	4	4696	4	LTBP1	2	33589406	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1276741	33589406	209609967	66	85965											
HEATR5B	54497	broad.mit.edu	37	chr2	37306407	37306407	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataattttcgtgtaggtggtCcaggtgaactacttattaat	9	5	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37306407	T	T	37306407	3	4	82	1	0	0	0	0	1	0	0	0	7099	855	30	4	6157	4	HEATR5B	2	37306407	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3717001	37306407	205892966	67	85966											
GEMIN6	79833	broad.mit.edu	37	chr2	38997168	38997168	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatttatatcgacagatttAtaaactttttagtcaaacta	4	5	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38997168	G	G	38997168	1	3	82	0	1	0	0	0	0	0	0	0	6396	464	16	5		5	GEMIN6	2	38997168	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1690761	38997168	204202205	68	85967											
PPM1B	5495	broad.mit.edu	37	chr2	44428309	44428309	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatttaaacatttaacacctGcattttttatttcagattta	2	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44428309	C	C	44428309	1	2	82	0	1	0	0	0	0	0	0	0	12437	1334	46	4		4	PPM1B	2	44428309	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5431141	44428309	198771064	69	85968											
SRBD1	55133	broad.mit.edu	37	chr2	45801959	45801959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattaattccagtcaaaaTaaaaccttaagttgacagtc	4	7	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45801959	C	C	45801959	1	2	82	0	1	0	0	0	0	0	0	0	15251	1421	49	5		5	SRBD1	2	45801959	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1373650	45801959	197397414	70	85969											
MSH2	4436	broad.mit.edu	37	chr2	47637443	47637443	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttgaggctctcctcatcCagattggaccaaaggaatgt	9	10	3	2	rs63751326		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47637443	T	T	47637443	4	4	82	1	0	0	0	0	0	1	0	0	9964	595	21	4	587	4	MSH2	2	47637443	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1835484	47637443	195561930	71	85970											
PAPOLG	64895	broad.mit.edu	37	chr2	61019475	61019475	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttttctgttcagtttatttGaggataatgtgaacttttct	8	4	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61019475	A	A	61019475	1	1	82	0	1	0	0	0	0	0	0	0	11525	1305	45	4		4	PAPOLG	2	61019475	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	13382032	61019475	182179898	72	85971											
ETAA1	54465	broad.mit.edu	37	chr2	67632270	67632270	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taacacaacagttggattttCaaagtttacatttacaagga	6	6	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67632270	A	A	67632270	4	1	82	1	0	0	0	0	0	1	0	0	5309	838	29	3	2474	3	ETAA1	2	67632270	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6612795	67632270	175567103	73	85972											
C1D	10438	broad.mit.edu	37	chr2	68270278	68270278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttggttaaattcaacataTatgtatttattgcctattaa	4	6	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68270278	C	C	68270278	1	2	82	0	1	0	0	0	0	0	0	0	1971	1421	49	5		5	C1D	2	68270278	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	638008	68270278	174929095	74	85973											
PNO1	56902	broad.mit.edu	37	chr2	68385445	68385445	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaggccctttgtggatcaGatgtcattttaaactccatc	9	9	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68385445	C	C	68385445	1	2	82	0	1	0	0	0	0	0	0	0	12256	957	33	4		4	PNO1	2	68385445	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	115167	68385445	174813928	75	85974											
ANTXR1	84168	broad.mit.edu	37	chr2	69298861	69298861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacagtggttataagtctAagggctctttcatatgtttt	8	6	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69298861	G	G	69298861	1	3	82	0	1	0	0	0	0	0	0	0	711	377	13	5		5	ANTXR1	2	69298861	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	913416	69298861	173900512	76	85975											
DQX1	165545	broad.mit.edu	37	chr2	74745631	74745631	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggatgatttgctccctgctGtagaatctgccattccttcc	8	12	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74745631	C	C	74745631	3	2	82	1	0	0	0	0	1	0	0	0	4791	1377	48	4	61	4	DQX1	2	74745631	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5446770	74745631	168453742	77	85976											
REG1B	5968	broad.mit.edu	37	chr2	79312789	79312790	+	Intron	DNP	GG	TT	TT													aaaaatcaatagaataaccaGgcctgtgtgcacactcagaa							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	79312790	TT	TT	79312789	1	4	82	0	1	0	0	0	0	0	0	0	13319	1015	35	2		2	REG1B	2	79312789	Intron	DNP	GG	TCGA-17-Z053-01A-01W-0747-08	4567158	79312789	163886584	78	85977											
REG3A	5068	broad.mit.edu	37	chr2	79384969	79384969	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgccggtgagtaggaaactCttccttgactcctcattgct	9	12	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384969	A	A	79384969	1	1	82	0	1	0	0	0	0	0	0	0	13320	928	32	3		3	REG3A	2	79384969	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	72180	79384969	163814404	79	85978											
CTNNA2	1496	broad.mit.edu	37	chr2	79422911	79422911	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagttttatcatctcagaatCctcctcacacaaagcaaggc	5	12	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79422911	A	A	79422911	1	1	82	0	1	0	0	0	0	0	0	0	4047	870	30	3		3	CTNNA2	2	79422911	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	37942	79422911	163776462	80	85979											
CTNNA2	1496	broad.mit.edu	37	chr2	80101225	80101225	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaggatcctcactgtcgGgatgagatggcagccgcccg	14	12	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80101225	T	T	80101225	2	4	82	1	0	0	0	0	0	0	0	1	4047	1219	43	2		2	CTNNA2	2	80101225	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	678314	80101225	163098148	81	85980											
CTNNA2	1496	broad.mit.edu	37	chr2	80874540	80874540	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaagatgagggctttgccaTtagctgtattgagattttaa	10	5	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80874540	A	A	80874540	1	1	82	0	1	0	0	0	0	0	0	0	4047	1508	52	5		5	CTNNA2	2	80874540	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	773315	80874540	162324833	82	85981											
ANKRD36B	57730	broad.mit.edu	37	chr2	98175299	98175299	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctcctttatttctgtggcTatatttgaaacagaatcttt	5	9	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98175299	A	A	98175299	2	1	82	1	0	0	0	0	0	0	0	1	666	1512	53	5		5	ANKRD36B	2	98175299	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08	17300759	98175299	145024074	83	85982											
REV1	51455	broad.mit.edu	37	chr2	100052449	100052449	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccaagctaatttttactAtttaaaacatcaggtctagt	4	9	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100052449	C	C	100052449	1	2	82	0	1	0	0	0	0	0	0	0	13347	464	16	5		5	REV1	2	100052449	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1877150	100052449	143146924	84	85983											
NMS	129521	broad.mit.edu	37	chr2	101089917	101089917	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctctcttcatccccctcatCcctttgatttgttttcttca	2	15	6	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101089917	T	T	101089917	1	4	82	0	1	0	0	0	0	0	0	0	10597	870	30	4		4	NMS	2	101089917	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1037468	101089917	142109456	85	85984											
NPAS2	4862	broad.mit.edu	37	chr2	101564584	101564584	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagaaaatcagatattgaActttccatttcagaaaccag	5	9	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101564584	T	T	101564584	1	4	82	0	1	0	0	0	0	0	0	0	10658	58	2	5		5	NPAS2	2	101564584	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	474667	101564584	141634789	86	85985											
POLR1B	84172	broad.mit.edu	37	chr2	113322225	113322225	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgtgcattccctctggtGacagaggcttgccttatact	10	12	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113322225	A	A	113322225	1	1	82	0	1	0	0	0	0	0	0	0	12305	1305	45	4		4	POLR1B	2	113322225	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	11757641	113322225	129877148	87	85986											
CKAP2L	150468	broad.mit.edu	37	chr2	113498264	113498264	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgaatgcattctaatacCcctcctgactctggcagcac	9	13	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113498264	T	T	113498264	1	4	82	0	1	0	0	0	0	0	0	0	3474	638	22	4		4	CKAP2L	2	113498264	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	176039	113498264	129701109	88	85987											
DPP10	57628	broad.mit.edu	37	chr2	116593723	116593723	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatatatatatatatattttTcccccccagggttatggtgg	7	7	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116593723	C	C	116593723	1	2	82	0	1	0	0	0	0	0	0	0	4767	1798	62	5		5	DPP10	2	116593723	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	3095459	116593723	126605650	89	85988											
CNTNAP5	129684	broad.mit.edu	37	chr2	125232469	125232469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatactgtggtaagtcagCccatctgttttgtcttgatg	9	8	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125232469	A	A	125232469	1	1	82	0	1	0	0	0	0	0	0	0	3682	754	26	3		3	CNTNAP5	2	125232469	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	8638746	125232469	117966904	90	85989											
POTEF	728378	broad.mit.edu	37	chr2	130832309	130832309	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatagcacagcttctctttGatgtcacgcacgatttcccg	7	13	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832309	T	T	130832309	2	4	82	1	0	0	0	0	0	0	0	1	12361	1280	45	3		3	POTEF	2	130832309	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5599840	130832309	112367064	91	85990											
THSD7B	80731	broad.mit.edu	37	chr2	138425295	138425295	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgccctatctctcaaatgcTgcagacttctgtatgctaag	7	11	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138425295	A	A	138425295	1	1	82	0	1	0	0	0	0	0	0	0	16003	1595	55	5		5	THSD7B	2	138425295	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	7592986	138425295	104774078	92	85991											
LRP1B	53353	broad.mit.edu	37	chr2	141115623	141115623	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggagatccatagggatgcAttttttattactacaagcaa	8	7	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141115623	T	T	141115623	3	4	82	1	0	0	0	0	1	0	0	0	9042	217	8	5	2551	5	LRP1B	2	141115623	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2690328	141115623	102083750	93	85992											
ARHGAP15	55843	broad.mit.edu	37	chr2	143973998	143973998	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagctaaaattgcagatGgaggaaagaaactaaggtaa	10	3	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143973998	T	T	143973998	4	4	82	1	0	0	0	0	0	1	0	0	868	1349	47	2	290	2	ARHGAP15	2	143973998	Nonsense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2858375	143973998	99225375	94	85993											
ZEB2	9839	broad.mit.edu	37	chr2	145161475	145161475	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaaatcacttaaaaccatCcccccacctgatctgtccct	3	16	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145161475	A	A	145161475	1	1	82	0	1	0	0	0	0	0	0	0	17750	870	30	3		3	ZEB2	2	145161475	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1187477	145161475	98037898	95	85994											
CYTIP	9595	broad.mit.edu	37	chr2	158287305	158287305	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaaatacatcctgaccttCactctcaaaacattttattt	1	11	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158287305	T	T	158287305	1	4	82	0	1	0	0	0	0	0	0	0	4240	841	29	4		4	CYTIP	2	158287305	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	13125830	158287305	84912068	96	85995											
ACVR1C	130399	broad.mit.edu	37	chr2	158390285	158390285	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcttaactttagagttatCttttcatgctgccttatggg	8	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158390285	A	A	158390285	1	1	82	0	1	0	0	0	0	0	0	0	222	928	32	3		3	ACVR1C	2	158390285	3'UTR	SNP	C	TCGA-17-Z053-01A-01W-0747-08	102980	158390285	84809088	97	85996											
ITGA6	3655	broad.mit.edu	37	chr2	173344449	173344449	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccagaaaacagcgtgtgGggcgcctagtgggatatggt	16	9	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173344449	A	A	173344449	3	1	82	1	0	0	0	0	1	0	0	0	7950	1232	43	4	1507	4	ITGA6	2	173344449	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	14954164	173344449	69854924	98	85997											
GPR155	151556	broad.mit.edu	37	chr2	175318530	175318530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattggctctattgatgggCagtgtaattcaccatttccc	8	10	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175318530	A	A	175318530	3	1	82	1	0	0	0	0	1	0	0	0	6725	710	25	3	825	3	GPR155	2	175318530	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1974081	175318530	67880843	99	85998											
ATF2	1386	broad.mit.edu	37	chr2	175983098	175983098	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttggtgttggggtctgatCtgaaataaatgtcaagaagt	13	3	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175983098	A	A	175983098	5	1	82	1	0	0	0	0	0	0	1	0	1084	927	32	3	1354	3	ATF2	2	175983098	Splice_Site	SNP	C	TCGA-17-Z053-01A-01W-0747-08	664568	175983098	67216275	100	85999											
TTN	7273	broad.mit.edu	37	chr2	179605006	179605006	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcctcaattctgaccgcAgaatcttgccctgcattttc	5	15	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179605006	G	G	179605006	2	3	82	1	0	0	0	0	0	0	0	1	16861	175	7	5		5	TTN	2	179605006	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3621908	179605006	63594367	101	86000											
TTN	7273	broad.mit.edu	37	chr2	179613696	179613696	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaacaattgatgttctggtAggtcttttttctagaactcc	7	7	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179613696	T	T	179613696	2	4	82	1	0	0	0	0	0	0	0	1	16861	407	15	5		5	TTN	2	179613696	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	8690	179613696	63585677	102	86001											
TTN	7273	broad.mit.edu	37	chr2	179628998	179628998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcaggtggataaacaggCatttcctgatcaggagacac	12	8	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179628998	T	T	179628998	3	4	82	1	0	0	0	0	1	0	0	0	16861	710	25	4	101248	4	TTN	2	179628998	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	15302	179628998	63570375	103	86002											
CERKL	375298	broad.mit.edu	37	chr2	182514852	182514852	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagggaggaaggaaggaaGgaaggaaggaaggaaggaag	23	0	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182514852	C	C	182514852	1	2	82	0	1	0	0	0	0	0	0	0	3298	1015	35	4		4	CERKL	2	182514852	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2885854	182514852	60684521	104	86003											
PDE1A	5136	broad.mit.edu	37	chr2	183088789	183088789	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaccctgtttatgtaatcaTataaaattatttttcatttc	3	7	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183088789	C	C	183088789	1	2	82	0	1	0	0	0	0	0	0	0	11727	1421	49	5		5	PDE1A	2	183088789	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	573937	183088789	60110584	105	86004											
STAT4	6775	broad.mit.edu	37	chr2	191919190	191919190	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagatctgtttccagaaaaAttctataggagaaaacattt	6	5	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191919190	G	G	191919190	1	3	82	0	1	0	0	0	0	0	0	0	15385	116	4	5		5	STAT4	2	191919190	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	8830401	191919190	51280183	106	86005											
HECW2	57520	broad.mit.edu	37	chr2	197184183	197184183	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctccaaggaagatgggtaAcccaggtcttgctggaactc	11	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197184183	G	G	197184183	2	3	82	1	0	0	0	0	0	0	0	1	7110	30	2	5		5	HECW2	2	197184183	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	5264993	197184183	46015190	107	86006											
ALS2CR12	130540	broad.mit.edu	37	chr2	202174129	202174129	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcccttacctggggcccTcactgagtgggtcctccatg	10	15	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202174129	A	A	202174129	1	1	82	0	1	0	0	0	0	0	0	0	553	1566	54	5		5	ALS2CR12	2	202174129	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	4989946	202174129	41025244	108	86007											
ADAM23	8745	broad.mit.edu	37	chr2	207406944	207406944	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattttagtgactcttccgTgccagtgctgtgttagggac	11	8	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207406944	A	A	207406944	1	1	82	0	1	0	0	0	0	0	0	0	245	1711	59	5		5	ADAM23	2	207406944	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	5232815	207406944	35792429	109	86008											
ADAM23	8745	broad.mit.edu	37	chr2	207422344	207422344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcctgaagctcatctggCtaaggaattataggatggtc	10	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207422344	A	A	207422344	1	1	82	0	1	0	0	0	0	0	0	0	245	812	28	3		3	ADAM23	2	207422344	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	15400	207422344	35777029	110	86009											
C2orf80	389073	broad.mit.edu	37	chr2	209045447	209045447	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctaaaaatcccttctattGacaatcccaggtcaccctta	3	14	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209045447	T	T	209045447	1	4	82	0	1	0	0	0	0	0	0	0	2219	1305	45	3		3	C2orf80	2	209045447	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1623103	209045447	34153926	111	86010											
MYL1	4632	broad.mit.edu	37	chr2	211158389	211158389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaagctcaaaaggagcCcatcatcaatctgatcagtt	7	9	5	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211158389	A	A	211158389	1	1	82	0	1	0	0	0	0	0	0	0	10137	638	22	2		2	MYL1	2	211158389	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2112942	211158389	32040984	112	86011											
CCDC108	255101	broad.mit.edu	37	chr2	219892811	219892811	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgggtacactcctgtctaGaaaggctacaccagtcgccc	9	15	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219892811	A	A	219892811	1	1	82	0	1	0	0	0	0	0	0	0	2769	957	33	4		4	CCDC108	2	219892811	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	8734422	219892811	23306562	113	86012											
DES	1674	broad.mit.edu	37	chr2	220290416	220290416	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcaaaggggttctgaggtCcataccaagaagacggtgat	14	7	1	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220290416	A	A	220290416	2	1	82	1	0	0	0	0	0	0	0	1	4489	842	30	3		3	DES	2	220290416	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	397605	220290416	22908957	114	86013											
SPEG	10290	broad.mit.edu	37	chr2	220352942	220352942	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagtcttccacatcaaaCtcaaggaccaggtgctgctg	8	15	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220352942	T	T	220352942	3	4	82	1	0	0	0	0	1	0	0	0	15154	565	20	4	7906	4	SPEG	2	220352942	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	62526	220352942	22846431	115	86014											
FARSB	10056	broad.mit.edu	37	chr2	223511406	223511406	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctttcatttagttgtgcTaaaatatccatctcgtcatc	6	9	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223511406	C	C	223511406	1	2	82	0	1	0	0	0	0	0	0	0	5737	1537	53	5		5	FARSB	2	223511406	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	3158464	223511406	19687967	116	86015											
COL4A3	1285	broad.mit.edu	37	chr2	228137670	228137670	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctgttgtcacaggctctGagtggtgagaaaggggacca	14	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228137670	C	C	228137670	2	2	82	1	0	0	0	0	0	0	0	1	3723	1277	45	4		4	COL4A3	2	228137670	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4626264	228137670	15061703	117	86016											
SP100	6672	broad.mit.edu	37	chr2	231314715	231314715	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaaggagaaagtaagagaGagattggacaggaatcaatg	13	3	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231314715	A	A	231314715	1	1	82	0	1	0	0	0	0	0	0	0	15074	957	33	4		4	SP100	2	231314715	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3177045	231314715	11884658	118	86017											
CAB39	51719	broad.mit.edu	37	chr2	231683215	231683215	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctctgtgcctcatgtgcGtttctctccacgcaggtgtt	9	12	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231683215	A	A	231683215	1	1	82	0	1	0	0	0	0	0	0	0	2551	1160	40	4		4	CAB39	2	231683215	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	368500	231683215	11516158	119	86018											
ECEL1	9427	broad.mit.edu	37	chr2	233346566	233346566	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtagttgagagacctgggcCcacagcagcagcatcaggcc	13	13	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233346566	T	T	233346566	1	4	82	0	1	0	0	0	0	0	0	0	4931	638	22	4		4	ECEL1	2	233346566	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1663351	233346566	9852807	120	86019											
GIGYF2	26058	broad.mit.edu	37	chr2	233712437	233712437	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatattttcaaattacttGtccagatacctttgtgtatc	4	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233712437	T	T	233712437	1	4	82	0	1	0	0	0	0	0	0	0	6442	1392	48	3		3	GIGYF2	2	233712437	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	365871	233712437	9486936	121	86020											
INPP5D	3635	broad.mit.edu	37	chr2	234079123	234079123	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcttctcaccagaggcccGggcatgttcttgttccagga	13	12	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234079123	A	A	234079123	1	1	82	0	1	0	0	0	0	0	0	0	7826	1131	39	4		4	INPP5D	2	234079123	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	366686	234079123	9120250	122	86021											
RBM44	375316	broad.mit.edu	37	chr2	238726601	238726601	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttttgtggaaataaaattGttgagaacaaaatattactg	7	2	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238726601	A	A	238726601	3	1	82	1	0	0	0	0	1	0	0	0	13246	1377	48	4	1048	4	RBM44	2	238726601	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4647478	238726601	4472772	123	86022											
ANKMY1	51281	broad.mit.edu	37	chr2	241463553	241463553	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatggccaaggctgcccttCaccaacggggagtccccctt	10	16	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241463553	A	A	241463553	2	1	82	1	0	0	0	0	0	0	0	1	634	813	29	3		3	ANKMY1	2	241463553	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2736952	241463553	1735820	124	86023											
CNTN4	152330	broad.mit.edu	37	chr3	3095689	3095689	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctttttttctcccttttctCctgcctgtcttatcttatca	2	14	5	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3095689	T	T	3095689	1	4	82	0	1	0	0	0	0	0	0	0	3675	870	30	4		4	CNTN4	3	3095689	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08		3095689	194926741	125	86024											
GRM7	2917	broad.mit.edu	37	chr3	7456760	7456760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaaacaacagaagaaatGtatggtttgccgaatactgg	10	5	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7456760	T	T	7456760	3	4	82	1	0	0	0	0	1	0	0	0	6868	1377	48	3	1102	3	GRM7	3	7456760	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4361071	7456760	190565670	126	86025											
TMEM40	55287	broad.mit.edu	37	chr3	12791318	12791318	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggctgggaggaggatGctgaagtctccatggctttt	15	8	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12791318	A	A	12791318	3	1	82	1	0	0	0	0	1	0	0	0	16286	1319	46	4	731	4	TMEM40	3	12791318	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5334558	12791318	185231112	127	86026											
NUP210	23225	broad.mit.edu	37	chr3	13360754	13360754	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcatgaccgctgtcccagCcaacagggcgaagagcgtga	13	12	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13360754	T	T	13360754	3	4	82	1	0	0	0	0	1	0	0	0	10855	739	26	4	220	4	NUP210	3	13360754	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	569436	13360754	184661676	128	86027											
STAC	6769	broad.mit.edu	37	chr3	36524424	36524424	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcattttctgtgattttaGactaatcagcaggaaatggc	8	8	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36524424	T	T	36524424	1	4	82	0	1	0	0	0	0	0	0	0	15357	957	33	3		3	STAC	3	36524424	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	23163670	36524424	161498006	129	86028											
STAC	6769	broad.mit.edu	37	chr3	36545950	36545950	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagaacataaaccaccagGtatttatggatgtcacagaa	8	8	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36545950	T	T	36545950	5	4	82	1	0	0	0	0	0	0	1	0	15357	1275	44	3	858	3	STAC	3	36545950	Splice_Site	SNP	G	TCGA-17-Z053-01A-01W-0747-08	21526	36545950	161476480	130	86029											
LTF	4057	broad.mit.edu	37	chr3	46483022	46483022	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattacagaagagaaactagTggggctttcataaatatttg	9	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46483022	A	A	46483022	1	1	82	0	1	0	0	0	0	0	0	0	9166	1711	59	5		5	LTF	3	46483022	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	9937072	46483022	151539408	131	86030											
WDR6	11180	broad.mit.edu	37	chr3	49049577	49049578	+	Frame_Shift_Ins	INS	-	G	G													acctgtagcacctgaccgacINSgaatcagtgggcatgtgggc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49049578	G	G	49049577	7	5	82	1	0	1	1	0	0	0	0	0	17437	528	19	0	706	0	WDR6	3	49049577	Frame_Shift_Ins	INS	-	TCGA-17-Z053-01A-01W-0747-08	2566555	49049577	148972853	132	86031											
SPCS1	28972	broad.mit.edu	37	chr3	52741778	52741778	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcaagaatcaagcacagacGacaagaaaccaggggaaaga	10	8	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52741778	C	C	52741778	3	2	82	1	0	0	0	0	1	0	0	0	15139	1058	37	4	474	4	SPCS1	3	52741778	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3692201	52741778	145280652	133	86032											
SYNPR	132204	broad.mit.edu	37	chr3	63466702	63466702	+	Intron	DEL	A	-	-													tcttctgtgctttgtctcagAaaaaatgcagtcttccaggg							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63466702	-	-	63466702	6	5	82	0	1	1	0	1	0	0	0	0	15578	261	9	0		0	SYNPR	3	63466702	Intron	DEL	A	TCGA-17-Z053-01A-01W-0747-08	10724924	63466702	134555728	134	86033											
PROS1	5627	broad.mit.edu	37	chr3	93617304	93617304	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtttacctcacaactcttCtgatcttgggcaagtttgaa	7	9	4	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93617304	A	A	93617304	3	1	82	1	0	0	0	0	1	0	0	0	12664	912	32	3	1225	3	PROS1	3	93617304	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	30150602	93617304	104405126	135	86034											
PROS1	5627	broad.mit.edu	37	chr3	93650485	93650485	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacactgactgcttgaatCcctttcctttagggcccaat	6	13	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93650485	A	A	93650485	1	1	82	0	1	0	0	0	0	0	0	0	12664	870	30	3		3	PROS1	3	93650485	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	33181	93650485	104371945	136	86035											
GPR128	84873	broad.mit.edu	37	chr3	100388038	100388038	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctttaagagactattttAaaaaaatctaggccaggcgc	7	8	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100388038	T	T	100388038	1	4	82	0	1	0	0	0	0	0	0	0	6706	377	13	5		5	GPR128	3	100388038	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	6737553	100388038	97634392	137	86036											
TFG	10342	broad.mit.edu	37	chr3	100467466	100467466	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttgtattgaagaagttcaGaaatttaaaagcagagcatt	8	3	1	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100467466	C	C	100467466	1	2	82	0	1	0	0	0	0	0	0	0	15929	957	33	4		4	TFG	3	100467466	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	79428	100467466	97554964	138	86037											
ABI3BP	25890	broad.mit.edu	37	chr3	100629974	100629974	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtgatttcttgaattgTcatctgtcatctaagtctaa	7	7	6	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100629974	C	C	100629974	1	2	82	0	1	0	0	0	0	0	0	0	91	1682	58	5		5	ABI3BP	3	100629974	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	162508	100629974	97392456	139	86038											
RPL24	6152	broad.mit.edu	37	chr3	101404672	101404672	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccacttaccgactgtcccTttttgtgcttccttctgtag	6	13	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101404672	G	G	101404672	3	3	82	1	0	0	0	0	1	0	0	0	13683	1609	56	5	307	5	RPL24	3	101404672	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	774698	101404672	96617758	140	86039											
MYH15	22989	broad.mit.edu	37	chr3	108117895	108117895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacattttccacccctccCtaccccatcttacagtttta	2	16	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108117895	A	A	108117895	1	1	82	0	1	0	0	0	0	0	0	0	10128	696	24	2		2	MYH15	3	108117895	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6713223	108117895	89904535	141	86040											
DPPA2	151871	broad.mit.edu	37	chr3	109027791	109027791	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgccttagaggtacaacAcatagatatggtgcgacggt	11	10	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109027791	T	T	109027791	1	4	82	0	1	0	0	0	0	0	0	0	4774	174	6	5		5	DPPA2	3	109027791	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	909896	109027791	88994639	142	86041											
DRD3	1814	broad.mit.edu	37	chr3	113890711	113890711	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accaggccattgccgaagacGatggccaggatgagcgcgca	14	12	0	2	rs143953030		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113890711	A	A	113890711	2	1	82	1	0	0	0	0	0	0	0	1	4798	1048	37	4		4	DRD3	3	113890711	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4862920	113890711	84131719	143	86042											
HCLS1	3059	broad.mit.edu	37	chr3	121363685	121363685	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgtctgccctgtccctctCaactccgtacttgcccccaa	5	19	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121363685	G	G	121363685	3	3	82	1	0	0	0	0	1	0	0	0	7061	835	29	4	1121	4	HCLS1	3	121363685	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7472974	121363685	76658745	144	86043											
SEMA5B	54437	broad.mit.edu	37	chr3	122634497	122634497	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacatgggagacagtacccCtattacccaagccaagggca	9	13	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122634497	T	T	122634497	1	4	82	0	1	0	0	0	0	0	0	0	14151	696	24	4		4	SEMA5B	3	122634497	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1270812	122634497	75387933	145	86044											
KALRN	8997	broad.mit.edu	37	chr3	124352712	124352712	+	Frame_Shift_Del	DEL	G	-	-													ctagaagagcaagaaaggttGgggtgaagatgagccggatg							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124352712	-	-	124352712	7	5	82	1	0	1	0	1	0	0	0	0	8045	1357	47	0	5775	0	KALRN	3	124352712	Frame_Shift_Del	DEL	G	TCGA-17-Z053-01A-01W-0747-08	1718215	124352712	73669718	146	86045											
COL6A6	131873	broad.mit.edu	37	chr3	130300391	130300391	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttattaagacatgcttttCctttgaatcctagactgttt	5	7	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130300391	T	T	130300391	1	4	82	0	1	0	0	0	0	0	0	0	3735	870	30	4		4	COL6A6	3	130300391	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5947679	130300391	67722039	147	86046											
PIK3R4	30849	broad.mit.edu	37	chr3	130437287	130437287	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaggcatcagtttacagtaGacatcagctgtacttatttg	8	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130437287	C	C	130437287	2	2	82	1	0	0	0	0	0	0	0	1	12016	929	33	4		4	PIK3R4	3	130437287	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	136896	130437287	67585143	148	86047											
PCCB	5096	broad.mit.edu	37	chr3	136002933	136002933	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgataaggtgttaatggaGagagggttttggcatgaaat	15	1	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136002933	A	A	136002933	1	1	82	0	1	0	0	0	0	0	0	0	11599	957	33	4		4	PCCB	3	136002933	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5565646	136002933	62019497	149	86048											
CLRN1	7401	broad.mit.edu	37	chr3	150661736	150661736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcaggctgagtaaatggGgtacccctgttgggagtccc	16	9	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150661736	T	T	150661736	1	4	82	0	1	0	0	0	0	0	0	0	3589	1247	43	2		2	CLRN1	3	150661736	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	14658803	150661736	47360694	150	86049											
DHX36	170506	broad.mit.edu	37	chr3	154011446	154011446	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaataaattacaaggtataTggtagagaaaaaagattaag	8	1	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154011446	A	A	154011446	1	1	82	0	1	0	0	0	0	0	0	0	4549	1479	51	5		5	DHX36	3	154011446	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	3349710	154011446	44010984	151	86050											
DHX36	170506	broad.mit.edu	37	chr3	154011603	154011603	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggggttcttttaaacaccTgtaaaaataaatacatcaga	7	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154011603	C	C	154011603	5	2	82	1	0	0	0	0	0	0	1	0	4549	1594	55	5	1470	5	DHX36	3	154011603	Splice_Site	SNP	T	TCGA-17-Z053-01A-01W-0747-08	157	154011603	44010827	152	86051											
SI	6476	broad.mit.edu	37	chr3	164735649	164735649	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagttagagcaggagttggcTggaatgtaacatctggaaat	13	4	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164735649	G	G	164735649	3	3	82	1	0	0	0	0	1	0	0	0	14410	1580	55	5	2026	5	SI	3	164735649	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	10724046	164735649	33286781	153	86052											
BCHE	590	broad.mit.edu	37	chr3	165547813	165547813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttttttaaattgtccaaGttcaagtaatatgtctggca	8	5	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165547813	T	T	165547813	3	4	82	1	0	0	0	0	1	0	0	0	1363	1029	36	3	811	3	BCHE	3	165547813	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	812164	165547813	32474617	154	86053											
PDCD10	11235	broad.mit.edu	37	chr3	167412151	167412151	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atattaatcagactgggcttCtttctctcctgcttcagagg	8	10	4	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167412151	T	T	167412151	1	4	82	0	1	0	0	0	0	0	0	0	11710	928	32	4		4	PDCD10	3	167412151	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1864338	167412151	30610279	155	86054											
PDCD10	11235	broad.mit.edu	37	chr3	167437737	167437737	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacaatgcctaacgcaccgAtaagagttcattcatgctag	7	10	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167437737	G	G	167437737	1	3	82	0	1	0	0	0	0	0	0	0	11710	348	12	5		5	PDCD10	3	167437737	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	25586	167437737	30584693	156	86055											
SLC7A14	57709	broad.mit.edu	37	chr3	170201305	170201305	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccatcagagttaagatcaCgctcacctgttaaaacaaga	6	11	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170201305	T	T	170201305	3	4	82	1	0	0	0	0	1	0	0	0	14810	536	19	4	1414	4	SLC7A14	3	170201305	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2763568	170201305	27821125	157	86056											
GHSR	2693	broad.mit.edu	37	chr3	172166187	172166187	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccccggctcttcgctgGgcgtcgcgttccacatgctg	12	15	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172166187	C	C	172166187	3	2	82	1	0	0	0	0	1	0	0	0	6439	1232	43	4	1165	4	GHSR	3	172166187	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1964882	172166187	25856243	158	86057											
ACTL6A	86	broad.mit.edu	37	chr3	179287794	179287794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataataaaatacattaattgGggaaaaaatgccttcttgat	6	4	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179287794	T	T	179287794	1	4	82	0	1	0	0	0	0	0	0	0	198	1247	43	2		2	ACTL6A	3	179287794	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	7121607	179287794	18734636	159	86058											
PEX5L	51555	broad.mit.edu	37	chr3	179615882	179615882	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatcacaatgtctgatAtattaacatatgtcagcttc	4	7	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179615882	G	G	179615882	1	3	82	0	1	0	0	0	0	0	0	0	11844	464	16	5		5	PEX5L	3	179615882	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	328088	179615882	18406548	160	86059											
TTC14	151613	broad.mit.edu	37	chr3	180322180	180322180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaaatacagtctaagaGggtagtgtttgggaaagttt	11	2	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180322180	A	A	180322180	1	1	82	0	1	0	0	0	0	0	0	0	16807	1015	35	4		4	TTC14	3	180322180	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	706298	180322180	17700250	161	86060											
CPN2	1370	broad.mit.edu	37	chr3	194062878	194062878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtggaacagctcctccGggagctgggccaggaggttc	18	10	0	0	rs143748840		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194062878	T	T	194062878	3	4	82	1	0	0	0	0	1	0	0	0	3842	1116	39	1	1087	1	CPN2	3	194062878	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	13740698	194062878	3959552	162	86061											
HTT	3064	broad.mit.edu	37	chr4	3231757	3231757	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccacctgcaaggcagctgcCgtccttgggatggtaagtga	14	11	0	1	rs2229985		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3231757	T	T	3231757	2	4	82	1	0	0	0	0	0	0	0	1	7527	639	23	4		4	HTT	4	3231757	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08		3231757	187922519	163	86062											
PCDH7	5099	broad.mit.edu	37	chr4	30726073	30726073	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgttcagcttcatccccAgtcaccaactgcaggaaaaa	6	13	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30726073	T	T	30726073	3	4	82	1	0	0	0	0	1	0	0	0	11610	188	7	5	3031	5	PCDH7	4	30726073	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	27494316	30726073	160428203	164	86063											
BEND4	389206	broad.mit.edu	37	chr4	42145891	42145891	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgttgtaacttgagccttccTgctttacgcaagaaatcatg	8	10	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42145891	A	A	42145891	3	1	82	1	0	0	0	0	1	0	0	0	1405	1580	55	5	1012	5	BEND4	4	42145891	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	11419818	42145891	149008385	165	86064											
CDKL2	8999	broad.mit.edu	37	chr4	76550981	76550981	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttatactcatattttttGattcaatatatgcatttact	2	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76550981	T	T	76550981	1	4	82	0	1	0	0	0	0	0	0	0	3184	1305	45	3		3	CDKL2	4	76550981	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	34405090	76550981	114603295	166	86065											
G3BP2	9908	broad.mit.edu	37	chr4	76582152	76582152	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccaaacacttcatcttcaTaacgaaacatatcattgtga	3	11	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76582152	A	A	76582152	3	1	82	1	0	0	0	0	1	0	0	0	6202	1406	49	5	1082	5	G3BP2	4	76582152	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	31171	76582152	114572124	167	86066											
SEPT11	55752	broad.mit.edu	37	chr4	77880029	77880029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagactaattcattatggtGgcttcaagcttttccttatt	6	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77880029	T	T	77880029	1	4	82	0	1	0	0	0	0	0	0	0	14174	1363	47	2		2	SEPT11	4	77880029	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1297877	77880029	113274247	168	86067											
BMP2K	55589	broad.mit.edu	37	chr4	79791871	79791871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attattattgaaatgagcatGttgaaatccagctttttaat	6	4	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79791871	A	A	79791871	1	1	82	0	1	0	0	0	0	0	0	0	1466	1392	48	4		4	BMP2K	4	79791871	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1911842	79791871	111362405	169	86068											
BMP2K	55589	broad.mit.edu	37	chr4	79792085	79792085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcgtcatcctcaccaGcagcagcagcagcagcagca	9	16	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79792085	T	T	79792085	3	4	82	1	0	0	0	0	1	0	0	0	1466	962	34	3	1422	3	BMP2K	4	79792085	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	214	79792085	111362191	170	86069											
HPSE	10855	broad.mit.edu	37	chr4	84234281	84234281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaccattgcctagttccCaagaaatgttataccccttg	5	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84234281	A	A	84234281	3	1	82	1	0	0	0	0	1	0	0	0	7411	595	21	2	1008	2	HPSE	4	84234281	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4442196	84234281	106919995	171	86070											
ABCG2	9429	broad.mit.edu	37	chr4	89052424	89052424	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagtcttttctaagaccatGactgtttagtatacataaca	6	7	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89052424	A	A	89052424	1	1	82	0	1	0	0	0	0	0	0	0	69	1305	45	4		4	ABCG2	4	89052424	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4818143	89052424	102101852	172	86071											
NAP1L5	266812	broad.mit.edu	37	chr4	89618431	89618431	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcggcagcctctgccgcagCctcctcctcctcctcgtctt	8	21	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89618431	T	T	89618431	3	4	82	1	0	0	0	0	1	0	0	0	10254	739	26	4	77	4	NAP1L5	4	89618431	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	566007	89618431	101535845	173	86072											
GRID2	2895	broad.mit.edu	37	chr4	94031777	94031777	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagttccgtcagctactcagTtggtaattttagacagccta	9	9	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94031777	C	C	94031777	1	2	82	0	1	0	0	0	0	0	0	0	6838	1740	60	5		5	GRID2	4	94031777	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	4413346	94031777	97122499	174	86073											
C4orf17	84103	broad.mit.edu	37	chr4	100458828	100458828	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaatgttctctgtcagatCctggcaaagctctgtagcat	8	10	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100458828	A	A	100458828	2	1	82	1	0	0	0	0	0	0	0	1	2275	845	30	3		3	C4orf17	4	100458828	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6427051	100458828	90695448	175	86074											
DNAJB14	79982	broad.mit.edu	37	chr4	100825031	100825031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacccaagttttctgtttgCattttaatagtttgcccagt	6	9	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100825031	A	A	100825031	3	1	82	1	0	0	0	0	1	0	0	0	4659	710	25	3	280	3	DNAJB14	4	100825031	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	366203	100825031	90329245	176	86075											
SLC39A8	64116	broad.mit.edu	37	chr4	103237077	103237077	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagacacagactatttcatCtagatgcacagcactcttta	6	10	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103237077	A	A	103237077	1	1	82	0	1	0	0	0	0	0	0	0	14738	928	32	3		3	SLC39A8	4	103237077	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2412046	103237077	87917199	177	86076											
ANXA5	308	broad.mit.edu	37	chr4	122617728	122617728	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcagtggggggcgcacGgccttacctgtgccatggcg	17	13	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122617728	A	A	122617728	1	1	82	0	1	0	0	0	0	0	0	0	721	1131	39	4		4	ANXA5	4	122617728	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	19380651	122617728	68536548	178	86077											
BBS7	55212	broad.mit.edu	37	chr4	122780265	122780265	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaggtaataatgttggTctttgcagtcacaataatgg	10	5	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122780265	C	C	122780265	3	2	82	1	0	0	0	0	1	0	0	0	1346	1667	58	5	1802	5	BBS7	4	122780265	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	162537	122780265	68374011	179	86078											
FAT4	79633	broad.mit.edu	37	chr4	126336015	126336015	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagcatatgtttaagaaaAttttttcttccctttaattt	3	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126336015	T	T	126336015	1	4	82	0	1	0	0	0	0	0	0	0	5749	116	4	5		5	FAT4	4	126336015	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3555750	126336015	64818261	180	86079											
FAT4	79633	broad.mit.edu	37	chr4	126384717	126384717	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaatttgatatattttaGggaaaatgtgtgaatcttca	8	3	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126384717	T	T	126384717	5	4	82	1	0	0	0	0	0	0	1	0	5749	1014	35	2	11832	2	FAT4	4	126384717	Splice_Site	SNP	G	TCGA-17-Z053-01A-01W-0747-08	48702	126384717	64769559	181	86080											
PLK4	10733	broad.mit.edu	37	chr4	128815036	128815036	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaccaatccttaatccctcTgtaagtaaatatatgtcact	4	11	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128815036	A	A	128815036	2	1	82	1	0	0	0	0	0	0	0	1	12193	1594	55	5		5	PLK4	4	128815036	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2430319	128815036	62339240	182	86081											
MFSD8	256471	broad.mit.edu	37	chr4	128854198	128854198	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaacattgatggccacaaCagcaacctggtcaatatttc	7	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128854198	G	G	128854198	3	3	82	1	0	0	0	0	1	0	0	0	9631	478	17	4	771	4	MFSD8	4	128854198	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	39162	128854198	62300078	183	86082											
PRMT10	90826	broad.mit.edu	37	chr4	148604819	148604819	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggccagcaagtgagaaaaaAgggccctaaatattaacagc	10	9	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148604819	G	G	148604819	1	3	82	0	1	0	0	0	0	0	0	0	12642	87	3	5		5	PRMT10	4	148604819	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	19750621	148604819	42549457	184	86083											
RNF175	285533	broad.mit.edu	37	chr4	154649432	154649432	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaataacggagaacatccCccacatagacagaaaccgcc	8	13	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154649432	G	G	154649432	3	3	82	1	0	0	0	0	1	0	0	0	13574	623	22	4	682	4	RNF175	4	154649432	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6044613	154649432	36504844	185	86084											
DCHS2	54798	broad.mit.edu	37	chr4	155287361	155287361	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgttccaagatcacataCctgtggtggagtcaatggta	10	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155287361	A	A	155287361	5	1	82	1	0	0	0	0	0	0	1	0	4321	521	18	3	8235	3	DCHS2	4	155287361	Splice_Site	SNP	C	TCGA-17-Z053-01A-01W-0747-08	637929	155287361	35866915	186	86085											
TDO2	6999	broad.mit.edu	37	chr4	156837113	156837113	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaattgaggggtggataTggataacatgtccagtataa	11	3	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156837113	C	C	156837113	1	2	82	0	1	0	0	0	0	0	0	0	15849	1479	51	5		5	TDO2	4	156837113	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1549752	156837113	34317163	187	86086											
CPE	1363	broad.mit.edu	37	chr4	166325419	166325419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaatgtctccctctgcaGgtgtggccaagatcccctct	8	16	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166325419	T	T	166325419	1	4	82	0	1	0	0	0	0	0	0	0	3831	1015	35	2		2	CPE	4	166325419	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	9488306	166325419	24828857	188	86087											
TLL1	7092	broad.mit.edu	37	chr4	166915512	166915512	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaacttctgtttcacagaAtgttttaaatgtcactgcag	7	7	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166915512	G	G	166915512	1	3	82	0	1	0	0	0	0	0	0	0	16068	116	4	5		5	TLL1	4	166915512	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	590093	166915512	24238764	189	86088											
HMGB2	3148	broad.mit.edu	37	chr4	174254255	174254255	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcattggggtcctttttcttCcccttcttatcacctttggg	8	12	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174254255	G	G	174254255	2	3	82	1	0	0	0	0	0	0	0	1	7293	842	30	4		4	HMGB2	4	174254255	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7338743	174254255	16900021	190	86089											
ASB5	140458	broad.mit.edu	37	chr4	177143601	177143601	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcataattttgaaaggtgagCaaagagttatatacttaaaa	8	3	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177143601	G	G	177143601	1	3	82	0	1	0	0	0	0	0	0	0	1030	725	25	4		4	ASB5	4	177143601	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2889346	177143601	14010675	191	86090											
TRIP13	9319	broad.mit.edu	37	chr5	896995	896995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttcacagggggggttctGtttgtccatttgttttgtag	13	6	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	896995	T	T	896995	1	4	82	0	1	0	0	0	0	0	0	0	16682	1392	48	3		3	TRIP13	5	896995	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08		896995	180018265	192	86091											
ADCY2	108	broad.mit.edu	37	chr5	7707123	7707123	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgatcacttctgttgcctCtgttggtatcatgttactca	7	9	5	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7707123	G	G	7707123	1	3	82	0	1	0	0	0	0	0	0	0	294	928	32	4		4	ADCY2	5	7707123	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6810128	7707123	173208137	193	86092											
TRIO	7204	broad.mit.edu	37	chr5	14507932	14507932	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catagagtcccgcccatcatCacgagtaagcttaagattgg	9	11	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14507932	T	T	14507932	1	4	82	0	1	0	0	0	0	0	0	0	16677	841	29	4		4	TRIO	5	14507932	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6800809	14507932	166407328	194	86093											
TRIO	7204	broad.mit.edu	37	chr5	14507985	14507985	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgacagttgtattctgatttCcagcctgagaatatcctggt	9	8	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14507985	T	T	14507985	1	4	82	0	1	0	0	0	0	0	0	0	16677	870	30	4		4	TRIO	5	14507985	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	53	14507985	166407275	195	86094											
FAM134B	54463	broad.mit.edu	37	chr5	16483364	16483364	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtatattatatttaaaattgGagaaatctgacaagctgata	7	3	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16483364	A	A	16483364	1	1	82	0	1	0	0	0	0	0	0	0	5492	1189	41	4		4	FAM134B	5	16483364	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1975379	16483364	164431896	196	86095											
RAI14	26064	broad.mit.edu	37	chr5	34807958	34807958	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaacagctttacattaTgcaggtaactttcattctcc	7	9	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34807958	C	C	34807958	2	2	82	1	0	0	0	0	0	0	0	1	13116	1471	51	5		5	RAI14	5	34807958	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08	18324594	34807958	146107302	197	86096											
SPEF2	79925	broad.mit.edu	37	chr5	35700805	35700805	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatttgattttgtcatattAttagatgtttcagatacttc	6	5	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35700805	T	T	35700805	3	4	82	1	0	0	0	0	1	0	0	0	15153	446	16	5	2432	5	SPEF2	5	35700805	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	892847	35700805	145214455	198	86097											
C5orf42	65250	broad.mit.edu	37	chr5	37167372	37167372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaactcaattatgtaataTttcaacaaaagactgaggaa	6	6	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37167372	C	C	37167372	1	2	82	0	1	0	0	0	0	0	0	0	2324	1508	52	5		5	C5orf42	5	37167372	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1466567	37167372	143747888	199	86098											
C5orf42	65250	broad.mit.edu	37	chr5	37210553	37210553	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actaaaggacgactacatcaTtagaactaatcgactgattg	7	8	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37210553	A	A	37210553	1	1	82	0	1	0	0	0	0	0	0	0	2324	1508	52	5		5	C5orf42	5	37210553	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	43181	37210553	143704707	200	86099											
RICTOR	253260	broad.mit.edu	37	chr5	38945134	38945134	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaggattatggatagtcTgctcacaccaatcagaatat	7	8	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38945134	C	C	38945134	3	2	82	1	0	0	0	0	1	0	0	0	13467	1580	55	5	472	5	RICTOR	5	38945134	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1734581	38945134	141970126	201	86100											
C9	735	broad.mit.edu	37	chr5	39285304	39285304	+	Frame_Shift_Del	DEL	T	-	-													cagagaagccaacagctctaTttttcattggggaactctag							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39285304	-	-	39285304	7	5	82	1	0	1	0	1	0	0	0	0	2469	1490	52	0	6	0	C9	5	39285304	Frame_Shift_Del	DEL	T	TCGA-17-Z053-01A-01W-0747-08	340170	39285304	141629956	202	86101											
C7	730	broad.mit.edu	37	chr5	40936367	40936367	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttacaggtagcaggaaaaCcctttttggtcctgggtagt	12	7	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40936367	G	G	40936367	1	3	82	0	1	0	0	0	0	0	0	0	2400	522	18	4		4	C7	5	40936367	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1651063	40936367	139978893	203	86102											
C7	730	broad.mit.edu	37	chr5	40967681	40967681	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtctaagcaatctgaCaaatgataactctgtttgtt	7	8	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40967681	T	T	40967681	1	4	82	0	1	0	0	0	0	0	0	0	2400	493	17	4		4	C7	5	40967681	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	31314	40967681	139947579	204	86103											
BDP1	55814	broad.mit.edu	37	chr5	70858022	70858023	+	Intron	INS	-	A	A													tgagagtgagactgcgtctcINSaaaaaaaaaaaaaaaaaaaa					rs75209090		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70858023	A	A	70858022	6	5	82	0	1	1	1	0	0	0	0	0	1400	841	29	0		0	BDP1	5	70858022	Intron	INS	-	TCGA-17-Z053-01A-01W-0747-08	29890341	70858022	110057238	205	86104											
AP3B1	8546	broad.mit.edu	37	chr5	77396792	77396792	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttacaatcatccagatctaGaagtgaaacatctttggtaa	6	8	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77396792	C	C	77396792	3	2	82	1	0	0	0	0	1	0	0	0	746	933	33	4	857	4	AP3B1	5	77396792	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6538770	77396792	103518468	206	86105											
RASA1	5921	broad.mit.edu	37	chr5	86682703	86682703	+	Frame_Shift_Del	DEL	T	-	-													acaaacatcgtatgatcatgTttttagatgaacttggggta							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86682703	-	-	86682703	7	5	82	1	0	1	0	1	0	0	0	0	13168	1725	60	0	3010	0	RASA1	5	86682703	Frame_Shift_Del	DEL	T	TCGA-17-Z053-01A-01W-0747-08	9285911	86682703	94232557	207	86106											
APC	324	broad.mit.edu	37	chr5	112174894	112174894	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcattctcaaagagttcAtctggacaaagcagtaaaac	6	8	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112174894	G	G	112174894	2	3	82	1	0	0	0	0	0	0	0	1	765	204	8	5		5	APC	5	112174894	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	25492191	112174894	68740366	208	86107											
PPP2CA	5515	broad.mit.edu	37	chr5	133536238	133536238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttacaaacatggttaacaCattatttgagtaattcatca	4	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133536238	A	A	133536238	1	1	82	0	1	0	0	0	0	0	0	0	12481	493	17	3		3	PPP2CA	5	133536238	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	21361344	133536238	47379022	209	86108											
MYOT	9499	broad.mit.edu	37	chr5	137211571	137211571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaagccatcccaaactgCaaatgctaagcccataccaa	5	14	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137211571	A	A	137211571	3	1	82	1	0	0	0	0	1	0	0	0	10188	710	25	3	416	3	MYOT	5	137211571	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3675333	137211571	43703689	210	86109											
PCDHB14	56122	broad.mit.edu	37	chr5	140604269	140604269	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctgaaaccgaccttcAagaactttttcactctagtt	4	11	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140604269	C	C	140604269	3	2	82	1	0	0	0	0	1	0	0	0	11633	131	5	5	1194	5	PCDHB14	5	140604269	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3392698	140604269	40310991	211	86110											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744997	140744997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcccggaactgtaatcgCgctgtttagcgtacatgatg	10	10	1	1	rs151160787	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140744997	T	T	140744997	3	4	82	1	0	0	0	0	1	0	0	0	11651	768	27	4	1102	4	PCDHGA5	5	140744997	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	140728	140744997	40170263	212	86111											
PCDHGA7	56108	broad.mit.edu	37	chr5	140762764	140762764	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagatctgcgctcagagtGcgcggtgtctggtaaacttt	13	8	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140762764	A	A	140762764	3	1	82	1	0	0	0	0	1	0	0	0	11653	1319	46	4	300	4	PCDHGA7	5	140762764	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	17767	140762764	40152496	213	86112											
PCDHGA7	56108	broad.mit.edu	37	chr5	140762857	140762857	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagatattaatgacaacgttCcaagattcttgacggaagaa	8	6	1	5			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140762857	T	T	140762857	3	4	82	1	0	0	0	0	1	0	0	0	11653	855	30	4	393	4	PCDHGA7	5	140762857	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	93	140762857	40152403	214	86113											
GPX3	2878	broad.mit.edu	37	chr5	150407382	150407382	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaactggggctcttttctcaGggccaggctattccccagga	11	12	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150407382	C	C	150407382	1	2	82	0	1	0	0	0	0	0	0	0	6807	1015	35	4		4	GPX3	5	150407382	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	9644525	150407382	30507878	215	86114											
SGCD	6444	broad.mit.edu	37	chr5	156186284	156186284	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctcatggatcctacacGcctacaggaacgaggcagaa	10	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156186284	C	C	156186284	2	2	82	1	0	0	0	0	0	0	0	1	14314	1074	38	4		4	SGCD	5	156186284	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5778902	156186284	24728976	216	86115											
DOCK2	1794	broad.mit.edu	37	chr5	169143320	169143320	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccttggtaagagagagggGaaaagtgtctagtgacaaca	14	5	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169143320	T	T	169143320	1	4	82	0	1	0	0	0	0	0	0	0	4727	1189	41	3		3	DOCK2	5	169143320	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	12957036	169143320	11771940	217	86116											
DOCK2	1794	broad.mit.edu	37	chr5	169477093	169477093	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtagtgatggcctctgcTaggtcagtgagttgagccct	13	8	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169477093	C	C	169477093	1	2	82	0	1	0	0	0	0	0	0	0	4727	1537	53	5		5	DOCK2	5	169477093	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	333773	169477093	11438167	218	86117											
ZNF354A	6940	broad.mit.edu	37	chr5	178139061	178139061	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacatacaaatctactttCtaggggtcctcttcgatatg	6	11	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178139061	T	T	178139061	2	4	82	1	0	0	0	0	0	0	0	1	17990	924	32	4		4	ZNF354A	5	178139061	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	8661968	178139061	2776199	219	86118											
GFPT2	9945	broad.mit.edu	37	chr5	179762830	179762830	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaagcatgccacataccgTtgcctttgtctgagcgctga	12	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179762830	A	A	179762830	3	1	82	1	0	0	0	0	1	0	0	0	6410	1725	60	5	1774	5	GFPT2	5	179762830	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1623769	179762830	1152430	220	86119											
F13A1	2162	broad.mit.edu	37	chr6	6175086	6175086	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtttctagggccaatcTctcttcttcttgacctgggg	11	11	5	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6175086	G	G	6175086	2	3	82	1	0	0	0	0	0	0	0	1	5383	1559	54	5		5	F13A1	6	6175086	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08		6175086	164939981	221	86120											
SYCP2L	221711	broad.mit.edu	37	chr6	10956459	10956459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaacttcactaaaaaacGgaaaagaaaatatgaggtag	8	4	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10956459	T	T	10956459	3	4	82	1	0	0	0	0	1	0	0	0	15552	1116	39	1	2245	1	SYCP2L	6	10956459	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4781373	10956459	160158608	222	86121											
JARID2	3720	broad.mit.edu	37	chr6	15496731	15496748	+	In_Frame_Del	DEL	GCAGCTGCGGGAGGGCCT	-	-													actaaggaggtgggggggcgGcagctgcgggagggcctgca							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15496748	-	-	15496731	7	5	82	1	0	1	0	1	0	0	0	0	8015	1190	42	0	1301	0	JARID2	6	15496731	In_Frame_Del	DEL	GCAGCTGCGGGAGGGCCT	TCGA-17-Z053-01A-01W-0747-08	4540272	15496731	155618336	223	86122											
KIF13A	63971	broad.mit.edu	37	chr6	17800239	17800239	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccgctgctgtctacgacttCaaggctcccactttcactgg	8	16	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17800239	G	G	17800239	3	3	82	1	0	0	0	0	1	0	0	0	8344	835	29	4	2958	4	KIF13A	6	17800239	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2303508	17800239	153314828	224	86123											
SLC17A2	10246	broad.mit.edu	37	chr6	25914897	25914897	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccatgaggaaacttgcatAtctgtgggaagatgatttta	10	6	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25914897	G	G	25914897	3	3	82	1	0	0	0	0	1	0	0	0	14530	463	16	5	253	5	SLC17A2	6	25914897	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	8114658	25914897	145200170	225	86124											
HIST1H2BF	8343	broad.mit.edu	37	chr6	26200044	26200047	+	Frame_Shift_Del	DEL	GCGC	-	-													cgcctggcgcattacaacaaGcgctccaccatcacctccag							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26200047	-	-	26200044	7	5	82	1	0	1	0	1	0	0	0	0	7212	962	34	0	260	0	HIST1H2BF	6	26200044	Frame_Shift_Del	DEL	GCGC	TCGA-17-Z053-01A-01W-0747-08	285147	26200044	144915023	226	86125											
HIST1H2AL	8332	broad.mit.edu	37	chr6	27833191	27833191	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaagccaagacccgctcttCtcgtgccggtctccagttcc	8	17	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27833191	T	T	27833191	3	4	82	1	0	0	0	0	1	0	0	0	7205	913	32	4	61	4	HIST1H2AL	6	27833191	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1633147	27833191	143281876	227	86126											
TRIM40	135644	broad.mit.edu	37	chr6	30105165	30105165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccactacaaggtaagcCtgggtcaccgcagccaggcc	11	15	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30105165	A	A	30105165	1	1	82	0	1	0	0	0	0	0	0	0	16639	696	24	2		2	TRIM40	6	30105165	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2271974	30105165	141009902	228	86127											
LTA	4049	broad.mit.edu	37	chr6	31540679	31540679	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaccttgagccctagagCccccctcaactctgttctcc	5	19	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31540679	G	G	31540679	1	3	82	0	1	0	0	0	0	0	0	0	9155	754	26	4		4	LTA	6	31540679	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1435514	31540679	139574388	229	86128											
CYP21A2	1589	broad.mit.edu	37	chr6	32007878	32007878	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggctctggacagctcctgGaagggcacgtgcacatggct	15	11	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32007878	T	T	32007878	4	4	82	1	0	0	0	0	0	1	0	0	4186	1175	41	3	2382	3	CYP21A2	6	32007878	Nonsense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	467199	32007878	139107189	230	86129											
ATF6B	1388	broad.mit.edu	37	chr6	32095138	32095138	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtagaagcgtgaggataTaggaagctacgtagtttctg	13	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32095138	C	C	32095138	1	2	82	0	1	0	0	0	0	0	0	0	1089	1421	49	5		5	ATF6B	6	32095138	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	87260	32095138	139019929	231	86130											
BRPF3	27154	broad.mit.edu	37	chr6	36168792	36168792	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatagcaatgttattctcttCtgtgacatctgcaacctggc	7	10	3	1	rs142038497		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36168792	T	T	36168792	2	4	82	1	0	0	0	0	0	0	0	1	1530	912	32	4		4	BRPF3	6	36168792	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4073654	36168792	134946275	232	86131											
STK38	11329	broad.mit.edu	37	chr6	36475470	36475470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccagcatccattatagCtctacagccaaagtacactg	5	14	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36475470	A	A	36475470	1	1	82	0	1	0	0	0	0	0	0	0	15421	812	28	3		3	STK38	6	36475470	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	306678	36475470	134639597	233	86132											
DNAH8	1769	broad.mit.edu	37	chr6	38905910	38905910	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccacccgcggaagcatcctCtacttcctcatcacagagat	7	16	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38905910	G	G	38905910	2	3	82	1	0	0	0	0	0	0	0	1	4647	900	32	4		4	DNAH8	6	38905910	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2430440	38905910	132209157	234	86133											
DAAM2	23500	broad.mit.edu	37	chr6	39843275	39843275	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccagcctttgccctgtcttCctccaccttcctcatcactc	4	20	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39843275	T	T	39843275	1	4	82	0	1	0	0	0	0	0	0	0	4249	870	30	4		4	DAAM2	6	39843275	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	937365	39843275	131271792	235	86134											
CDC5L	988	broad.mit.edu	37	chr6	44387332	44387332	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagttctctctactccattCaggtattgtaaatgaacacg	6	10	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44387332	T	T	44387332	2	4	82	1	0	0	0	0	0	0	0	1	3112	825	29	4		4	CDC5L	6	44387332	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4544057	44387332	126727735	236	86135											
MEP1A	4224	broad.mit.edu	37	chr6	46806699	46806699	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtagttcccacactcccttCatgtccttttccctcaggtg	7	15	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46806699	T	T	46806699	1	4	82	0	1	0	0	0	0	0	0	0	9568	841	29	4		4	MEP1A	6	46806699	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2419367	46806699	124308368	237	86136											
CRISP1	167	broad.mit.edu	37	chr6	49814479	49814479	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatgaatggttcactgatCatcttgacaacatcttctga	6	8	5	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49814479	T	T	49814479	1	4	82	0	1	0	0	0	0	0	0	0	3911	841	29	4		4	CRISP1	6	49814479	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3007780	49814479	121300588	238	86137											
PKHD1	5314	broad.mit.edu	37	chr6	51890773	51890773	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttggtgaaggaccacgggCgaagaacctgttgccagccc	14	12	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51890773	T	T	51890773	3	4	82	1	0	0	0	0	1	0	0	0	12066	768	27	4	8572	4	PKHD1	6	51890773	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2076294	51890773	119224294	239	86138											
IL17A	3605	broad.mit.edu	37	chr6	52053998	52053998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtcctgcgcagggagCctccacactgccccaactcc	9	19	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52053998	A	A	52053998	3	1	82	1	0	0	0	0	1	0	0	0	7704	739	26	3	386	3	IL17A	6	52053998	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	163225	52053998	119061069	240	86139											
DST	667	broad.mit.edu	37	chr6	56490116	56490116	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagcaaagtactagagtttCattctacaataatttaacac	5	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56490116	T	T	56490116	1	4	82	0	1	0	0	0	0	0	0	0	4823	841	29	4		4	DST	6	56490116	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4436118	56490116	114624951	241	86140											
DST	667	broad.mit.edu	37	chr6	56499809	56499809	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttgtactctccatgccttCagcactttacacaaattaaa	3	12	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56499809	T	T	56499809	1	4	82	0	1	0	0	0	0	0	0	0	4823	841	29	4		4	DST	6	56499809	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	9693	56499809	114615258	242	86141											
EYS	346007	broad.mit.edu	37	chr6	66045134	66045134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatgatagatgcctctctGtctactaagatgaaacctag	7	9	3	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66045134	T	T	66045134	1	4	82	0	1	0	0	0	0	0	0	0	5375	1392	48	3		3	EYS	6	66045134	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	9545325	66045134	105069933	243	86142											
EYS	346007	broad.mit.edu	37	chr6	66200586	66200586	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgacactggccaattatttCtgagcaattctttcctataa	5	9	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66200586	G	G	66200586	3	3	82	1	0	0	0	0	1	0	0	0	5375	922	32	4	8789	4	EYS	6	66200586	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	155452	66200586	104914481	244	86143											
BAI3	577	broad.mit.edu	37	chr6	70071037	70071037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacggatgataatttgagagGggctgacatggacatagtcc	13	6	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70071037	T	T	70071037	3	4	82	1	0	0	0	0	1	0	0	0	1305	1232	43	2	3978	2	BAI3	6	70071037	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3870451	70071037	101044030	245	86144											
LMBRD1	55788	broad.mit.edu	37	chr6	70490611	70490611	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacaatagacaaatttcagTatgtaaatgctgagataaga	8	4	1	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70490611	A	A	70490611	1	1	82	0	1	0	0	0	0	0	0	0	8916	1653	57	5		5	LMBRD1	6	70490611	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	419574	70490611	100624456	246	86145											
RIMS1	22999	broad.mit.edu	37	chr6	73110293	73110294	+	Missense_Mutation	DNP	GA	AT	AT													ctcgacctgtccagcatggtGatcggatggtacaaattgtt							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	73110294	AT	AT	73110293	3	1	82	1	0	0	0	0	1	0	0	0	13478	1277	45	4	5253	4	RIMS1	6	73110293	Missense_Mutation	DNP	GA	TCGA-17-Z053-01A-01W-0747-08	2619682	73110293	98004774	247	86146											
C6orf221	154288	broad.mit.edu	37	chr6	74073076	74073076	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtttcctggctgctgggGcggcagtctcgccctcccag	16	14	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74073076	A	A	74073076	1	1	82	0	1	0	0	0	0	0	0	0	2378	1218	42	4		4	C6orf221	6	74073076	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	962783	74073076	97041991	248	86147											
ZNF292	23036	broad.mit.edu	37	chr6	87969715	87969715	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaccagggatgctttgCtgcctttacgatacagcaaa	9	10	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87969715	T	T	87969715	3	4	82	1	0	0	0	0	1	0	0	0	17952	797	28	4	6398	4	ZNF292	6	87969715	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	13896639	87969715	83145352	249	86148											
MDN1	23195	broad.mit.edu	37	chr6	90368042	90368043	+	Frame_Shift_Del	DEL	CT	-	-													tgctccttcctctccaaagcCtctggcacctgctcctctgt							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90368043	-	-	90368042	7	5	82	1	0	1	0	1	0	0	0	0	9508	680	24	0	1773	0	MDN1	6	90368042	Frame_Shift_Del	DEL	CT	TCGA-17-Z053-01A-01W-0747-08	2398327	90368042	80747025	250	86149											
MDN1	23195	broad.mit.edu	37	chr6	90394621	90394621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctttttctaggggggaacGaagttccacaattttggcct	10	8	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90394621	A	A	90394621	3	1	82	1	0	0	0	0	1	0	0	0	9508	1058	37	4	5115	4	MDN1	6	90394621	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	26579	90394621	80720446	251	86150											
KIAA0776	23376	broad.mit.edu	37	chr6	96999879	96999879	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatttgaatttgactgcccGgctcttacacagagaatatg	8	8	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96999879	C	C	96999879	1	2	82	0	1	0	0	0	0	0	0	0	8263	1131	39	4		4	KIAA0776	6	96999879	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6605258	96999879	74115188	252	86151											
MCHR2	84539	broad.mit.edu	37	chr6	100382436	100382436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagagagaaagaacaacaCcattacattaattggattag	9	5	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100382436	T	T	100382436	1	4	82	0	1	0	0	0	0	0	0	0	9476	522	18	4		4	MCHR2	6	100382436	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3382557	100382436	70732631	253	86152											
SIM1	6492	broad.mit.edu	37	chr6	100897620	100897620	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgtggcggtggaatgccCggtgaagggactgaaagatt	17	8	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100897620	T	T	100897620	1	4	82	0	1	0	0	0	0	0	0	0	14436	667	23	4		4	SIM1	6	100897620	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	515184	100897620	70217447	254	86153											
SIM1	6492	broad.mit.edu	37	chr6	100901567	100901567	+	Intron	DEL	A	-	-													tttttgttttctgagaaactAaaagctcaactcagggccag							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100901567	-	-	100901567	6	5	82	0	1	1	0	1	0	0	0	0	14436	377	13	0		0	SIM1	6	100901567	Intron	DEL	A	TCGA-17-Z053-01A-01W-0747-08	3947	100901567	70213500	255	86154											
AIM1	202	broad.mit.edu	37	chr6	106992379	106992379	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtatttttcaatgaaattGatatgtaccttgaaaaaatg	6	3	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106992379	A	A	106992379	1	1	82	0	1	0	0	0	0	0	0	0	430	1305	45	4		4	AIM1	6	106992379	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6090812	106992379	64122688	256	86155			1	68		4	4	514	G		2.249158e-07
AIM1	202	broad.mit.edu	37	chr6	106992417	106992417	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgttaacatgtctggaaatGactactcctcgtgttcttta	7	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106992417	A	A	106992417	1	1	82	0	1	0	0	0	0	0	0	0	430	1305	45	4		4	AIM1	6	106992417	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	38	106992417	64122650	257	86156			1	68		4	4	514	G		2.249158e-07
AIM1	202	broad.mit.edu	37	chr6	106992541	106992541	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcctggggaggttacaatgGagagcttcagtctttacgac	13	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106992541	A	A	106992541	3	1	82	1	0	0	0	0	1	0	0	0	430	1174	41	4	3949	4	AIM1	6	106992541	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	124	106992541	64122526	258	86157			1	68		4	4	514	G		2.249158e-07
AIM1	202	broad.mit.edu	37	chr6	106992892	106992892	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagagtctatcacagagtaGgcattcaatacacaaatatc	6	8	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106992892	A	A	106992892	1	1	82	0	1	0	0	0	0	0	0	0	430	1015	35	4		4	AIM1	6	106992892	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	351	106992892	64122175	259	86158			1	68		4	4	514	G		2.249158e-07
FIG4	9896	broad.mit.edu	37	chr6	110146373	110146373	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatctacagagatcttcCaagcccacatccaggccagc	7	14	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110146373	T	T	110146373	4	4	82	1	0	0	0	0	0	1	0	0	5945	595	21	4	2719	4	FIG4	6	110146373	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3153481	110146373	60968694	260	86159											
HDAC2	3066	broad.mit.edu	37	chr6	114270103	114270121	+	Intron	DEL	ACCATTTTTTTCTGGAAAT	-	-													agttcttgggtggaagaaaaAccatttttttctggaaatac							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114270121	-	-	114270103	6	5	82	0	1	1	0	1	0	0	0	0	7074	58	2	0		0	HDAC2	6	114270103	Intron	DEL	ACCATTTTTTTCTGGAAAT	TCGA-17-Z053-01A-01W-0747-08	4123730	114270103	56844964	261	86160											
SLC35F1	222553	broad.mit.edu	37	chr6	118588185	118588186	+	Frame_Shift_Del	DEL	GT	-	-													actgttttgtgatcccagtcGtgattttgctctcctggttc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118588186	-	-	118588185	7	5	82	1	0	1	0	1	0	0	0	0	14702	1145	40	0	519	0	SLC35F1	6	118588185	Frame_Shift_Del	DEL	GT	TCGA-17-Z053-01A-01W-0747-08	4318082	118588185	52526882	262	86161											
SLC35F1	222553	broad.mit.edu	37	chr6	118588441	118588441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttcccactatctgtgtcCtgttcatgtctgttccccac	6	14	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118588441	A	A	118588441	1	1	82	0	1	0	0	0	0	0	0	0	14702	696	24	2		2	SLC35F1	6	118588441	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	256	118588441	52526626	263	86162											
C6orf170	221322	broad.mit.edu	37	chr6	121563386	121563386	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgattgaatataaatgtcacAcattcattgatagcacctgt	6	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121563386	G	G	121563386	2	3	82	1	0	0	0	0	0	0	0	1	2367	157	6	5		5	C6orf170	6	121563386	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2974945	121563386	49551681	264	86163											
C6orf170	221322	broad.mit.edu	37	chr6	121642717	121642717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagggacagagatcagGgtgctgtcaagacgtcttgt	15	7	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121642717	A	A	121642717	1	1	82	0	1	0	0	0	0	0	0	0	2367	1247	43	4		4	C6orf170	6	121642717	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	79331	121642717	49472350	265	86164											
TRDN	10345	broad.mit.edu	37	chr6	123542652	123542652	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgctttgtgggagacAcatcttcagttccttctagt	8	9	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123542652	G	G	123542652	3	3	82	1	0	0	0	0	1	0	0	0	16592	159	6	5	167	5	TRDN	6	123542652	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1899935	123542652	47572415	266	86165											
PTPRK	5796	broad.mit.edu	37	chr6	128298214	128298214	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagctctgtgaagaaacaaGgtagatggagaaatataaaa	11	3	1	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128298214	A	A	128298214	1	1	82	0	1	0	0	0	0	0	0	0	12913	1015	35	4		4	PTPRK	6	128298214	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4755562	128298214	42816853	267	86166											
EPB41L2	2037	broad.mit.edu	37	chr6	131211719	131211719	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcatatctcattttaagTatgattactcaaaaactaaa	2	7	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131211719	C	C	131211719	1	2	82	0	1	0	0	0	0	0	0	0	5195	1653	57	5		5	EPB41L2	6	131211719	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2913505	131211719	39903348	268	86167											
ENPP1	5167	broad.mit.edu	37	chr6	132149291	132149291	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgttctggattccgagtggGatcggaaactgatgtcccgg	14	9	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132149291	T	T	132149291	1	4	82	0	1	0	0	0	0	0	0	0	5171	1189	41	3		3	ENPP1	6	132149291	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	937572	132149291	38965776	269	86168											
BCLAF1	9774	broad.mit.edu	37	chr6	136589176	136589176	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccacttcatgtttcaataCtatctctgactttaggaata	4	10	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136589176	G	G	136589176	1	3	82	0	1	0	0	0	0	0	0	0	1388	580	20	4		4	BCLAF1	6	136589176	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4439885	136589176	34525891	270	86169											
ADAT2	134637	broad.mit.edu	37	chr6	143754990	143754990	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaggcggagagcagctgcAcacataatgcacggctccac	11	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143754990	G	G	143754990	2	3	82	1	0	0	0	0	0	0	0	1	285	157	6	5		5	ADAT2	6	143754990	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	7165814	143754990	27360077	271	86170											
LRP11	84918	broad.mit.edu	37	chr6	150158336	150158336	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattgaattctcatttaagGcatagcttttacatgtaaag	6	5	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150158336	A	A	150158336	1	1	82	0	1	0	0	0	0	0	0	0	9040	1218	42	4		4	LRP11	6	150158336	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6403346	150158336	20956731	272	86171											
C6orf97	80129	broad.mit.edu	37	chr6	151907107	151907107	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcaccagaaagctctccaGagggcccagaaagcagagaa	10	11	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151907107	T	T	151907107	3	4	82	1	0	0	0	0	1	0	0	0	2399	933	33	3	1202	3	C6orf97	6	151907107	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1748771	151907107	19207960	273	86172											
SYNE1	23345	broad.mit.edu	37	chr6	152651646	152651646	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catccaccgcctccccaaggCccgccacctcgtccagaatg	7	21	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152651646	T	T	152651646	3	4	82	1	0	0	0	0	1	0	0	0	15564	739	26	4	12568	4	SYNE1	6	152651646	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	744539	152651646	18463421	274	86173											
FNDC1	84624	broad.mit.edu	37	chr6	159653380	159653380	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcagccccgcccaggggcGcccccctcggcttcggcctc	12	22	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159653380	T	T	159653380	2	4	82	1	0	0	0	0	0	0	0	1	6026	1074	38	3		3	FNDC1	6	159653380	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	7001734	159653380	11461687	275	86174											
PNLDC1	154197	broad.mit.edu	37	chr6	160227025	160227025	+	Frame_Shift_Del	DEL	A	-	-													ccattttcagctctccggatAaagaccaaatcaaggtggtg							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160227025	-	-	160227025	7	5	82	1	0	1	0	1	0	0	0	0	12243	363	13	0	461	0	PNLDC1	6	160227025	Frame_Shift_Del	DEL	A	TCGA-17-Z053-01A-01W-0747-08	573645	160227025	10888042	276	86175											
PARK2	5071	broad.mit.edu	37	chr6	162989862	162989862	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acatgcaggggctggtggagGactttaagaacaagtacaag	14	6	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162989862	A	A	162989862	1	1	82	0	1	0	0	0	0	0	0	0	11543	1189	41	4		4	PARK2	6	162989862	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2762837	162989862	8125205	277	86176											
RPS6KA2	6196	broad.mit.edu	37	chr6	166833431	166833431	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacacgccgcatcatagcCttgacgcttcaggacctagg	10	14	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166833431	A	A	166833431	3	1	82	1	0	0	0	0	1	0	0	0	13762	681	24	2	458	2	RPS6KA2	6	166833431	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3843569	166833431	4281636	278	86177											
PHF14	9678	broad.mit.edu	37	chr7	11022706	11022706	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgcaagaagaagaagagtAaagttcttagcagaaacagt	11	4	1	5			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11022706	T	T	11022706	4	4	82	1	0	0	0	0	0	1	0	0	11920	363	13	5	830	5	PHF14	7	11022706	Nonsense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08		11022706	148115957	279	86178											
FAM126A	84668	broad.mit.edu	37	chr7	23017838	23017838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcagttgcacaggttaTatatttgattttgtcaaaaa	7	4	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23017838	C	C	23017838	1	2	82	0	1	0	0	0	0	0	0	0	5475	1421	49	5		5	FAM126A	7	23017838	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	11995132	23017838	136120825	280	86179											
NPY	4852	broad.mit.edu	37	chr7	24329140	24329140	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggaaaacgatccagcccaGagacactgatttcagacctc	8	12	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24329140	A	A	24329140	3	1	82	1	0	0	0	0	1	0	0	0	10702	943	33	4	217	4	NPY	7	24329140	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1311302	24329140	134809523	281	86180											
PDE1C	5137	broad.mit.edu	37	chr7	31867886	31867886	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctttggtgcttctatccAaagagctgcaaacacgtacc	8	12	1	1	rs140975048	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31867886	G	G	31867886	1	3	82	0	1	0	0	0	0	0	0	0	11729	145	5	5		5	PDE1C	7	31867886	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	7538746	31867886	127270777	282	86181											
CCT6A	908	broad.mit.edu	37	chr7	56129515	56129515	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaacattcagaatcaggtCagcttgtgggtgtggacctg	13	8	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56129515	G	G	56129515	3	3	82	1	0	0	0	0	1	0	0	0	2987	827	29	4	1469	4	CCT6A	7	56129515	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	24261629	56129515	103009148	283	86182											
ABHD11	83451	broad.mit.edu	37	chr7	73150996	73150996	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcccgagggaagagccGcataatctcagggtggtggc	17	10	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73150996	T	T	73150996	2	4	82	1	0	0	0	0	0	0	0	1	75	1086	38	3		3	ABHD11	7	73150996	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	17021481	73150996	85987667	284	86183											
HIP1	3092	broad.mit.edu	37	chr7	75186030	75186030	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgggcagaagtttccAggctgccttgcagaacctga	11	11	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75186030	G	G	75186030	3	3	82	1	0	0	0	0	1	0	0	0	7181	188	7	5	1506	5	HIP1	7	75186030	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2035034	75186030	83952633	285	86184											
SEMA3D	223117	broad.mit.edu	37	chr7	84651816	84651816	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgaacgttggtcctccTgcaactgggtatacggactt	10	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84651816	A	A	84651816	2	1	82	1	0	0	0	0	0	0	0	1	14140	1567	55	5		5	SEMA3D	7	84651816	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08	9465786	84651816	74486847	286	86185											
ADAM22	53616	broad.mit.edu	37	chr7	87822558	87822558	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accgacaaagtgccagggtaTgtggaaacctcttccatgtg	11	10	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87822558	A	A	87822558	1	1	82	0	1	0	0	0	0	0	0	0	244	1479	51	5		5	ADAM22	7	87822558	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	3170742	87822558	71316105	287	86186											
CALCR	799	broad.mit.edu	37	chr7	93106986	93106986	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattgcaatatggacctggcCatttagaaggaaattgatat	10	5	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93106986	T	T	93106986	1	4	82	0	1	0	0	0	0	0	0	0	2605	609	21	4		4	CALCR	7	93106986	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5284428	93106986	66031677	288	86187											
TRRAP	8295	broad.mit.edu	37	chr7	98491575	98491575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgtgaaattttttgctGtctcaaagttggctgaacac	8	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98491575	T	T	98491575	1	4	82	0	1	0	0	0	0	0	0	0	16726	1392	48	3		3	TRRAP	7	98491575	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5384589	98491575	60647088	289	86188											
TRRAP	8295	broad.mit.edu	37	chr7	98606135	98606135	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccccatctcccgttactAtgaccggctggctacggtgc	9	16	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98606135	G	G	98606135	3	3	82	1	0	0	0	0	1	0	0	0	16726	449	16	5	11026	5	TRRAP	7	98606135	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	114560	98606135	60532528	290	86189											
ARPC1B	10095	broad.mit.edu	37	chr7	98985774	98985774	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccacgctggtcatcctgcgGatcaaccgggctgcccgctg	12	17	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98985774	A	A	98985774	2	1	82	1	0	0	0	0	0	0	0	1	974	1161	41	4		4	ARPC1B	7	98985774	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	379639	98985774	60152889	291	86190											
LRCH4	4034	broad.mit.edu	37	chr7	100176142	100176142	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcaggcagacctgtgtgCggggcagcacacgccaggga	15	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100176142	T	T	100176142	1	4	82	0	1	0	0	0	0	0	0	0	9022	783	27	4		4	LRCH4	7	100176142	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1190368	100176142	58962521	292	86191											
SERPINE1	5054	broad.mit.edu	37	chr7	100773739	100773740	+	Nonsense_Mutation	DNP	GG	CT	CT													gccctccggcatctgtacaaGgagctcatggggccatggaa							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	100773740	CT	CT	100773739	4	2	82	1	0	0	0	0	0	1	0	0	14224	991	35	4	315	4	SERPINE1	7	100773739	Nonsense_Mutation	DNP	GG	TCGA-17-Z053-01A-01W-0747-08	597597	100773739	58364924	293	86192											
RELN	5649	broad.mit.edu	37	chr7	103162699	103162699	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcagacaaagcccctgcaAgcttgttctcaaattagtga	7	11	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103162699	T	T	103162699	1	4	82	0	1	0	0	0	0	0	0	0	13328	87	3	5		5	RELN	7	103162699	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2388960	103162699	55975964	294	86193											
ST7	7982	broad.mit.edu	37	chr7	116830964	116830964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaggccattcatagagctGtggaattcaatcctcatgtg	10	8	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116830964	T	T	116830964	3	4	82	1	0	0	0	0	1	0	0	0	15347	1377	48	3	1274	3	ST7	7	116830964	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	13668265	116830964	42307699	295	86194											
ASZ1	136991	broad.mit.edu	37	chr7	117062196	117062196	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaatagaaaggttacttcAaatggctttagttttttgca	8	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117062196	C	C	117062196	1	2	82	0	1	0	0	0	0	0	0	0	1073	145	5	5		5	ASZ1	7	117062196	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	231232	117062196	42076467	296	86195											
CADPS2	93664	broad.mit.edu	37	chr7	122001154	122001154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctgaatcaatttcttcCatcgcacaaaaattcacaat	2	11	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122001154	A	A	122001154	1	1	82	0	1	0	0	0	0	0	0	0	2597	609	21	2		2	CADPS2	7	122001154	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4938958	122001154	37137509	297	86196											
CADPS2	93664	broad.mit.edu	37	chr7	122303304	122303304	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttacctgacatgcattaTaaaggagctggtgttccagt	9	9	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122303304	C	C	122303304	3	2	82	1	0	0	0	0	1	0	0	0	2597	1406	49	5	3273	5	CADPS2	7	122303304	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	302150	122303304	36835359	298	86197											
CCDC136	64753	broad.mit.edu	37	chr7	128444758	128444758	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaatgaggaataccgggCcctgcaggagagcaacagca	13	11	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128444758	T	T	128444758	3	4	82	1	0	0	0	0	1	0	0	0	2796	739	26	4	743	4	CCDC136	7	128444758	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6141454	128444758	30693905	299	86198											
PLXNA4	91584	broad.mit.edu	37	chr7	131866699	131866699	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgcccttatgtcttcCcccctattccactatcctag	3	15	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131866699	T	T	131866699	1	4	82	0	1	0	0	0	0	0	0	0	12217	638	22	4		4	PLXNA4	7	131866699	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3421941	131866699	27271964	300	86199											
CNOT4	4850	broad.mit.edu	37	chr7	135107146	135107146	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgttagcattaaattaattAaaaaaactgcgtaagtaatt	5	4	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135107146	T	T	135107146	1	4	82	0	1	0	0	0	0	0	0	0	3653	377	13	5		5	CNOT4	7	135107146	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3240447	135107146	24031517	301	86200											
CHRM2	1129	broad.mit.edu	37	chr7	136623310	136623310	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatccctcccatgccgctGgccccaccatagccgctgcc	9	20	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136623310	A	A	136623310	1	1	82	0	1	0	0	0	0	0	0	0	3408	1363	47	4		4	CHRM2	7	136623310	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1516164	136623310	22515353	302	86201											
CREB3L2	64764	broad.mit.edu	37	chr7	137600857	137600857	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctccccaaaaaagctcagtGaaggatgattgaaagtagaa	9	7	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137600857	A	A	137600857	1	1	82	0	1	0	0	0	0	0	0	0	3889	1305	45	4		4	CREB3L2	7	137600857	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	977547	137600857	21537806	303	86202											
AKR1D1	6718	broad.mit.edu	37	chr7	137801300	137801300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaaattctcaaaggatgCtattgaaacatacagctgtg	9	6	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137801300	A	A	137801300	1	1	82	0	1	0	0	0	0	0	0	0	473	812	28	3		3	AKR1D1	7	137801300	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	200443	137801300	21337363	304	86203											
KIAA1549	57670	broad.mit.edu	37	chr7	138525056	138525056	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtggagtggcctggtcaaCatttataggagagtatggct	15	5	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138525056	G	G	138525056	1	3	82	0	1	0	0	0	0	0	0	0	8314	493	17	4		4	KIAA1549	7	138525056	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	723756	138525056	20613607	305	86204											
PRSS1	5644	broad.mit.edu	37	chr7	142459838	142459838	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccagccactggcacgaaGtgcctcatctctggctgggg	12	15	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142459838	A	A	142459838	2	1	82	1	0	0	0	0	0	0	0	1	12720	1020	36	4		4	PRSS1	7	142459838	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3934782	142459838	16678825	306	86205											
GIMAP6	474344	broad.mit.edu	37	chr7	150324693	150324693	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcccctcttcctacaccaGacgtcatgacctggagactg	8	15	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150324693	A	A	150324693	1	1	82	0	1	0	0	0	0	0	0	0	6447	957	33	4		4	GIMAP6	7	150324693	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	7864855	150324693	8813970	307	86206											
GIMAP5	55340	broad.mit.edu	37	chr7	150438155	150438155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcaactatcatcacgtGtgtgttatcaaaccatcaca	6	10	4	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150438155	T	T	150438155	1	4	82	0	1	0	0	0	0	0	0	0	6446	1392	48	3		3	GIMAP5	7	150438155	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	113462	150438155	8700508	308	86207											
GIMAP5	55340	broad.mit.edu	37	chr7	150439759	150439759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcctgaaagacctggtgCgggagtgtgagagaaggtac	17	7	0	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150439759	A	A	150439759	2	1	82	1	0	0	0	0	0	0	0	1	6446	759	27	3		3	GIMAP5	7	150439759	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1604	150439759	8698904	309	86208											
KCNH2	3757	broad.mit.edu	37	chr7	150646032	150646032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacctccagcaggtcgtccCgatggatcttgtgtaggtca	12	12	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150646032	A	A	150646032	3	1	82	1	0	0	0	0	1	0	0	0	8102	652	23	1	999	1	KCNH2	7	150646032	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	206273	150646032	8492631	310	86209											
MLL3	58508	broad.mit.edu	37	chr7	151960229	151960229	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgattgtctaaaaaataagaTagcattaatgatgccttatc	6	6	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151960229	C	C	151960229	1	2	82	0	1	0	0	0	0	0	0	0	9715	1421	49	5		5	MLL3	7	151960229	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1314197	151960229	7178434	311	86210											
RNF32	140545	broad.mit.edu	37	chr7	156450185	156450185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttaactgttggatacatGctgcttctcttttgtaaact	6	7	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156450185	T	T	156450185	1	4	82	0	1	0	0	0	0	0	0	0	13599	1334	46	3		3	RNF32	7	156450185	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4489956	156450185	2688478	312	86211											
ESYT2	57488	broad.mit.edu	37	chr7	158536459	158536459	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgctcctgaccctttgtcctCagagataggaacttagaaaa	8	11	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158536459	A	A	158536459	1	1	82	0	1	0	0	0	0	0	0	0	5307	841	29	3		3	ESYT2	7	158536459	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2086274	158536459	602204	313	86212											
CSMD1	64478	broad.mit.edu	37	chr8	2819885	2819885	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtacagaaaactgtctaTggaaacactttctatgtaat	6	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2819885	C	C	2819885	1	2	82	0	1	0	0	0	0	0	0	0	3978	1479	51	5		5	CSMD1	8	2819885	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08		2819885	143544137	314	86213											
PCM1	5108	broad.mit.edu	37	chr8	17804643	17804643	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccattgataattgaaaccGcaacatggattttaatagtc	7	7	0	2	rs143250926	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17804643	A	A	17804643	1	1	82	0	1	0	0	0	0	0	0	0	11678	1102	38	4		4	PCM1	8	17804643	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	14984758	17804643	128559379	315	86214											
BMP1	649	broad.mit.edu	37	chr8	22034084	22034084	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccggcaggccatgaggcacTgggagaagcacacctgtgtc	14	12	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22034084	G	G	22034084	3	3	82	1	0	0	0	0	1	0	0	0	1462	1580	55	5	486	5	BMP1	8	22034084	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	4229441	22034084	124329938	316	86215											
ADAM7	8756	broad.mit.edu	37	chr8	24349468	24349469	+	Frame_Shift_Del	DEL	CT	-	-													gaaagatgaatgtgattttcCtgagatgtgcactggccact							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24349469	-	-	24349468	7	5	82	1	0	1	0	1	0	0	0	0	251	681	24	0	1463	0	ADAM7	8	24349468	Frame_Shift_Del	DEL	CT	TCGA-17-Z053-01A-01W-0747-08	2315384	24349468	122014554	317	86216											
WRN	7486	broad.mit.edu	37	chr8	30949243	30949243	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaattgcaaagaacAggaatataaattattatatt	5	2	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30949243	G	G	30949243	1	3	82	0	1	0	0	0	0	0	0	0	17529	203	7	5		5	WRN	8	30949243	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	6599775	30949243	115414779	318	86217											
KCNU1	157855	broad.mit.edu	37	chr8	36671860	36671860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagccaagacatccttaggaCggaccttcatcatgttcttc	7	12	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36671860	T	T	36671860	3	4	82	1	0	0	0	0	1	0	0	0	8163	527	19	4	898	4	KCNU1	8	36671860	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5722617	36671860	109692162	319	86218											
ERLIN2	11160	broad.mit.edu	37	chr8	37599439	37599439	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagggaggcaccctttcttgGttaattccctgtctcgtagc	10	11	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37599439	C	C	37599439	1	2	82	0	1	0	0	0	0	0	0	0	5275	1276	44	4		4	ERLIN2	8	37599439	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	927579	37599439	108764583	320	86219											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37732063	37732063	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctctggtctggggagccCtcggagaggaaattggaggt	17	8	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37732063	T	T	37732063	3	4	82	1	0	0	0	0	1	0	0	0	13001	681	24	4	2275	4	RAB11FIP1	8	37732063	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	132624	37732063	108631959	321	86220											
PXDNL	137902	broad.mit.edu	37	chr8	52348672	52348672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccccttttgtcttgaccCagcttttgatgaattactac	6	11	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52348672	A	A	52348672	1	1	82	0	1	0	0	0	0	0	0	0	12956	609	21	2		2	PXDNL	8	52348672	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	14616609	52348672	94015350	322	86221											
ST18	9705	broad.mit.edu	37	chr8	53030991	53030991	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcctaatttcttcatcActctctattcctgtaaagag	4	10	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53030991	T	T	53030991	3	4	82	1	0	0	0	0	1	0	0	0	15330	156	6	5	389	5	ST18	8	53030991	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	682319	53030991	93333031	323	86222											
OPRK1	4986	broad.mit.edu	37	chr8	54142126	54142126	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctccaccaggatgaataTgtgaatgggagtccagcaga	12	9	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54142126	C	C	54142126	3	2	82	1	0	0	0	0	1	0	0	0	10979	1464	51	5	272	5	OPRK1	8	54142126	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1111135	54142126	92221896	324	86223											
MRPL15	29088	broad.mit.edu	37	chr8	55055223	55055223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgttttgacatatttcagGgtgctgacacctttacggca	9	9	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55055223	T	T	55055223	3	4	82	1	0	0	0	0	1	0	0	0	9874	1246	43	2	444	2	MRPL15	8	55055223	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	913097	55055223	91308799	325	86224											
CYP7A1	1581	broad.mit.edu	37	chr8	59404999	59404999	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcggatgttgtaggaaccGtcctcaaggtgcaaagtgaa	12	7	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59404999	A	A	59404999	2	1	82	1	0	0	0	0	0	0	0	1	4229	1136	40	4		4	CYP7A1	8	59404999	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4349776	59404999	86959023	326	86225											
NSMAF	8439	broad.mit.edu	37	chr8	59512669	59512669	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggggctgttctacacttTacctgtattaacttctgttt	8	8	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59512669	A	A	59512669	1	1	82	0	1	0	0	0	0	0	0	0	10769	1769	61	5		5	NSMAF	8	59512669	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	107670	59512669	86851353	327	86226											
CHD7	55636	broad.mit.edu	37	chr8	61774815	61774815	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacagaaacgacatagatgtCgaaaccctaataaattggat	7	7	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61774815	T	T	61774815	4	4	82	1	0	0	0	0	0	1	0	0	3361	876	31	4	8029	4	CHD7	8	61774815	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2262146	61774815	84589207	328	86227											
NKAIN3	286183	broad.mit.edu	37	chr8	63830965	63830965	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atattggctctttaagtatgGaaacttggcatagattctta	8	5	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63830965	A	A	63830965	1	1	82	0	1	0	0	0	0	0	0	0	10532	1189	41	4		4	NKAIN3	8	63830965	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2056150	63830965	82533057	329	86228											
PREX2	80243	broad.mit.edu	37	chr8	69028264	69028264	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagtttttgattgtttttCttttaattggtctttcacaa	5	4	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69028264	A	A	69028264	1	1	82	0	1	0	0	0	0	0	0	0	12583	928	32	3		3	PREX2	8	69028264	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5197299	69028264	77335758	330	86229											
SULF1	23213	broad.mit.edu	37	chr8	70498853	70498853	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctttctatgttctcacaAtgttagcatgagaaatgtta	8	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70498853	G	G	70498853	1	3	82	0	1	0	0	0	0	0	0	0	15488	116	4	5		5	SULF1	8	70498853	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1470589	70498853	75865169	331	86230											
ZFHX4	79776	broad.mit.edu	37	chr8	77690784	77690784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaactctccaactcgagcCtgtcccccagtgtaaaacac	5	16	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77690784	A	A	77690784	1	1	82	0	1	0	0	0	0	0	0	0	17761	696	24	2		2	ZFHX4	8	77690784	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7191931	77690784	68673238	332	86231											
FABP12	646486	broad.mit.edu	37	chr8	82441718	82441719	+	Missense_Mutation	DNP	CA	AG	AG													atttcctcaaactcttctccCagcttaaaggagatctcatt							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	82441719	AG	AG	82441718	3	1	82	1	0	0	0	0	1	0	0	0	5402	581	21	2	231	2	FABP12	8	82441718	Missense_Mutation	DNP	CA	TCGA-17-Z053-01A-01W-0747-08	4750934	82441718	63922304	333	86232											
CA3	761	broad.mit.edu	37	chr8	86358355	86358355	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcactcactgcacctgcaAcctgctcttacccagggcaa	7	16	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86358355	G	G	86358355	1	3	82	0	1	0	0	0	0	0	0	0	2543	58	2	5		5	CA3	8	86358355	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3916637	86358355	60005667	334	86233											
CNGB3	54714	broad.mit.edu	37	chr8	87641372	87641372	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaataaaagtcaaattacAtgttttccacatgatatact	4	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87641372	G	G	87641372	1	3	82	0	1	0	0	0	0	0	0	0	3633	232	8	5		5	CNGB3	8	87641372	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1283017	87641372	58722650	335	86234											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885129	88885129	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgtcgttctccgaggcGgggtatggggagggtatggt	20	5	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88885129	C	C	88885129	2	2	82	1	0	0	0	0	0	0	0	1	4305	1103	39	4		4	DCAF4L2	8	88885129	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1243757	88885129	57478893	336	86235											
CDH17	1015	broad.mit.edu	37	chr8	95164221	95164221	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgcttcattcacatctgtCacaataagcgtgaacttggc	9	10	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95164221	T	T	95164221	2	4	82	1	0	0	0	0	0	0	0	1	3132	813	29	4		4	CDH17	8	95164221	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6279092	95164221	51199801	337	86236											
CDH17	1015	broad.mit.edu	37	chr8	95164334	95164334	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacagctgctgtttcaaaatCaagaggctgtgtaggagaaa	11	6	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95164334	T	T	95164334	3	4	82	1	0	0	0	0	1	0	0	0	3132	826	29	4	964	4	CDH17	8	95164334	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	113	95164334	51199688	338	86237											
MATN2	4147	broad.mit.edu	37	chr8	99019788	99019788	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcctttgcctgtcagtgtcCtgagggacacgtgctccgca	11	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99019788	G	G	99019788	3	3	82	1	0	0	0	0	1	0	0	0	9426	681	24	4	1566	4	MATN2	8	99019788	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3855454	99019788	47344234	339	86238											
RGS22	26166	broad.mit.edu	37	chr8	101076251	101076251	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtcctagggtgaactcCatcatcaaagataaaattct	6	8	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101076251	A	A	101076251	4	1	82	1	0	0	0	0	0	1	0	0	13414	603	21	2	3129	2	RGS22	8	101076251	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2056463	101076251	45287771	340	86239											
CSMD3	114788	broad.mit.edu	37	chr8	113241180	113241180	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatcataattaatttctactCccatgaatcaattaatttct	1	8	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113241180	A	A	113241180	1	1	82	0	1	0	0	0	0	0	0	0	3980	870	30	3		3	CSMD3	8	113241180	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	12164929	113241180	33122842	341	86240											
CSMD3	114788	broad.mit.edu	37	chr8	114186083	114186083	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtccccgacgtcgaatcTtgtgccatataatacacctt	6	13	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114186083	A	A	114186083	4	1	82	1	0	0	0	0	0	1	0	0	3980	1617	56	5	10818	5	CSMD3	8	114186083	Nonsense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	944903	114186083	32177939	342	86241											
COL14A1	7373	broad.mit.edu	37	chr8	121220565	121220565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgcaatctatgcccacaCtgctagtgaaggcctacggg	10	12	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121220565	A	A	121220565	3	1	82	1	0	0	0	0	1	0	0	0	3703	565	20	3	1324	3	COL14A1	8	121220565	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7034482	121220565	25143457	343	86242											
FER1L6	654463	broad.mit.edu	37	chr8	125131084	125131084	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggttttgcatctttttgcaGggcaaggttgaagctgagtt	13	5	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125131084	A	A	125131084	5	1	82	1	0	0	0	0	0	0	1	0	5872	1014	35	4	5443	4	FER1L6	8	125131084	Splice_Site	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3910519	125131084	21232938	344	86243											
TG	7038	broad.mit.edu	37	chr8	134034543	134034543	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacatatgggagaccctcCggggatactgacacccatag	11	12	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134034543	T	T	134034543	1	4	82	0	1	0	0	0	0	0	0	0	15936	667	23	4		4	TG	8	134034543	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	8903459	134034543	12329479	345	86244											
ZFAT	57623	broad.mit.edu	37	chr8	135621131	135621131	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttggtagcacctgagattGatgcaaaaggcattgcttat	10	7	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135621131	C	C	135621131	1	2	82	0	1	0	0	0	0	0	0	0	17758	1305	45	4		4	ZFAT	8	135621131	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1586588	135621131	10742891	346	86245											
FAM135B	51059	broad.mit.edu	37	chr8	139153366	139153366	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacagggttccaagtggaaGtacctgtgcccggtttcacg	12	11	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139153366	C	C	139153366	1	2	82	0	1	0	0	0	0	0	0	0	5495	1044	36	4		4	FAM135B	8	139153366	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3532235	139153366	7210656	347	86246											
FAM135B	51059	broad.mit.edu	37	chr8	139163568	139163568	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatccagccctggcaggggtCtccttgggcacagatgagaa	13	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139163568	A	A	139163568	3	1	82	1	0	0	0	0	1	0	0	0	5495	912	32	3	1102	3	FAM135B	8	139163568	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	10202	139163568	7200454	348	86247											
FAM135B	51059	broad.mit.edu	37	chr8	139164597	139164597	+	Frame_Shift_Del	DEL	C	-	-													aagacttcccgatcactgggCaactccagagccctgcttcg							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139164597	-	-	139164597	7	5	82	1	0	1	0	1	0	0	0	0	5495	709	25	0	2131	0	FAM135B	8	139164597	Frame_Shift_Del	DEL	C	TCGA-17-Z053-01A-01W-0747-08	1029	139164597	7199425	349	86248											
COL22A1	169044	broad.mit.edu	37	chr8	139616916	139616916	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcccagggcctgagcctGcatagactgcccattggtgg	13	12	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139616916	T	T	139616916	1	4	82	0	1	0	0	0	0	0	0	0	3713	1334	46	3		3	COL22A1	8	139616916	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	452319	139616916	6747106	350	86249											
FLJ43860	389690	broad.mit.edu	37	chr8	142517281	142517281	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgcagacccacaggagctCaccactaactctggcctcac	8	16	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142517281	A	A	142517281	1	1	82	0	1	0	0	0	0	0	0	0	5987	841	29	3		3	FLJ43860	8	142517281	5'UTR	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2900365	142517281	3846741	351	86250											
ZNF623	9831	broad.mit.edu	37	chr8	144733668	144733668	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttataaaataattactttccCgcccagtgagtgatgtttgg	8	7	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144733668	T	T	144733668	1	4	82	0	1	0	0	0	0	0	0	0	18174	667	23	4		4	ZNF623	8	144733668	3'UTR	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2216387	144733668	1630354	352	86251											
ZNF16	7564	broad.mit.edu	37	chr8	146156799	146156799	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattacacacgtgaggcttTtctccagtgtgaattctccg	8	11	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146156799	C	C	146156799	2	2	82	1	0	0	0	0	0	0	0	1	17864	1838	64	5		5	ZNF16	8	146156799	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1423131	146156799	207223	353	86252											
RANBP6	26953	broad.mit.edu	37	chr9	6015441	6015441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcttctatttctgacgGcatctaagaggaaggtagtc	10	9	4	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6015441	T	T	6015441	3	4	82	1	0	0	0	0	1	0	0	0	13139	1203	42	3	3154	3	RANBP6	9	6015441	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08		6015441	135197990	354	86253											
TAF1L	138474	broad.mit.edu	37	chr9	32633772	32633772	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggataatattccctccaaaGgtgccccgaagaccctgttg	9	12	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32633772	T	T	32633772	2	4	82	1	0	0	0	0	0	0	0	1	15642	987	35	2		2	TAF1L	9	32633772	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	26618331	32633772	108579659	355	86254											
TPM2	7169	broad.mit.edu	37	chr9	35684986	35684986	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagctgagaaagagcagcCtgcggtgctgagacggaggg	18	8	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35684986	T	T	35684986	1	4	82	0	1	0	0	0	0	0	0	0	16530	696	24	4		4	TPM2	9	35684986	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3051214	35684986	105528445	356	86255											
NPR2	4882	broad.mit.edu	37	chr9	35793020	35793020	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaccaggtgtatgcccgAgagccagggggccccgagca	15	14	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35793020	G	G	35793020	2	3	82	1	0	0	0	0	0	0	0	1	10690	291	11	5		5	NPR2	9	35793020	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	108034	35793020	105420411	357	86256											
ZBTB5	9925	broad.mit.edu	37	chr9	37442130	37442130	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagcataaaggagcgctgcAtgcgggcgctctgctcctga	14	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37442130	G	G	37442130	3	3	82	1	0	0	0	0	1	0	0	0	17677	217	8	5	1618	5	ZBTB5	9	37442130	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1649110	37442130	103771301	358	86257											
IGFBPL1	347252	broad.mit.edu	37	chr9	38414217	38414217	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagctaggaggaggagacaAggagacgcagcctttaccct	15	9	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38414217	G	G	38414217	1	3	82	0	1	0	0	0	0	0	0	0	7655	87	3	5		5	IGFBPL1	9	38414217	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	972087	38414217	102799214	359	86258											
APBA1	320	broad.mit.edu	37	chr9	72047354	72047354	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggattggaaactcagggaGctttcctggaaggtctgctc	13	9	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72047354	C	C	72047354	1	2	82	0	1	0	0	0	0	0	0	0	758	986	34	4		4	APBA1	9	72047354	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	33633137	72047354	69166077	360	86259											
SVEP1	79987	broad.mit.edu	37	chr9	113149665	113149665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgcaggaatataccacGttgggtccagtcgtcctgtt	11	10	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113149665	T	T	113149665	3	4	82	1	0	0	0	0	1	0	0	0	15538	1136	40	3	783	3	SVEP1	9	113149665	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	41102311	113149665	28063766	361	86260											
C9orf43	257169	broad.mit.edu	37	chr9	116190310	116190310	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaccttttacctgccatcaAggtcttgtcttttcctggat	6	12	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116190310	T	T	116190310	1	4	82	0	1	0	0	0	0	0	0	0	2509	87	3	5		5	C9orf43	9	116190310	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3040645	116190310	25023121	362	86261											
TNC	3371	broad.mit.edu	37	chr9	117848842	117848842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcacactcacaccgccCgtctacacagcggccacgat	6	18	4	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117848842	A	A	117848842	3	1	82	1	0	0	0	0	1	0	0	0	16393	652	23	1	5541	1	TNC	9	117848842	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1658532	117848842	23364589	363	86262											
RABGAP1	23637	broad.mit.edu	37	chr9	125832720	125832720	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatgtgagtaattaggtctCtgttatgacttaacacatgg	9	7	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125832720	T	T	125832720	1	4	82	0	1	0	0	0	0	0	0	0	13072	928	32	4		4	RABGAP1	9	125832720	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7983878	125832720	15380711	364	86263											
FCN2	2220	broad.mit.edu	37	chr9	137778495	137778495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcagtgtcctggtagcCttgtggaagaggcctcacct	13	11	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137778495	T	T	137778495	1	4	82	0	1	0	0	0	0	0	0	0	5849	696	24	4		4	FCN2	9	137778495	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	11945775	137778495	3434936	365	86264											
DIP2C	22982	broad.mit.edu	37	chr10	329151	329151	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgggaaaggcttctgtatCtacaggagcctaacctctct	9	11	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	329151	T	T	329151	1	4	82	0	1	0	0	0	0	0	0	0	4569	928	32	4		4	DIP2C	10	329151	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08		329151	135205596	366	86265											
DIP2C	22982	broad.mit.edu	37	chr10	518573	518573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaatcatgccctccatccCcacagcaaagccagagctac	5	17	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	518573	A	A	518573	1	1	82	0	1	0	0	0	0	0	0	0	4569	638	22	2		2	DIP2C	10	518573	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	189422	518573	135016174	367	86266											
IDI2	91734	broad.mit.edu	37	chr10	1066617	1066617	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcttcatgaggtcaatGgtgtagatccagcctggact	13	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1066617	T	T	1066617	1	4	82	0	1	0	0	0	0	0	0	0	7570	1363	47	2		2	IDI2	10	1066617	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	548044	1066617	134468130	368	86267											
ITIH2	3698	broad.mit.edu	37	chr10	7749130	7749130	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggtaataagtgacatacAgttgaagaatgattgtctaa	9	4	1	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7749130	G	G	7749130	1	3	82	0	1	0	0	0	0	0	0	0	7974	203	7	5		5	ITIH2	10	7749130	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	6682513	7749130	127785617	369	86268											
ITIH2	3698	broad.mit.edu	37	chr10	7763533	7763533	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattgggcagctcctcttccCtgtgtgctggagaaggggca	14	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7763533	G	G	7763533	1	3	82	0	1	0	0	0	0	0	0	0	7974	696	24	4		4	ITIH2	10	7763533	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	14403	7763533	127771214	370	86269											
ITIH2	3698	broad.mit.edu	37	chr10	7786107	7786107	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaatggaaaactaagcaccTattttggaaaactgggattt	8	6	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7786107	A	A	7786107	3	1	82	1	0	0	0	0	1	0	0	0	7974	1522	53	5	2342	5	ITIH2	10	7786107	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	22574	7786107	127748640	371	86270											
GATA3	2625	broad.mit.edu	37	chr10	8100829	8100830	+	Intron	DNP	CC	AA	AA													gagccagctcttccctggagCcttttctcctccctcctccc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	8100830	AA	AA	8100829	1	1	82	0	1	0	0	0	0	0	0	0	6317	754	26	3		3	GATA3	10	8100829	Intron	DNP	CC	TCGA-17-Z053-01A-01W-0747-08	314722	8100829	127433918	372	86271											
STAM	8027	broad.mit.edu	37	chr10	17726562	17726562	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaataaaaattaaatttcCctactttatcatagtctccc	1	9	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17726562	T	T	17726562	1	4	82	0	1	0	0	0	0	0	0	0	15366	638	22	4		4	STAM	10	17726562	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	9625733	17726562	117808185	373	86272											
SLC39A12	221074	broad.mit.edu	37	chr10	18331602	18331602	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcagttgaatatatctgGatcttattctggttttttat	7	6	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18331602	T	T	18331602	1	4	82	0	1	0	0	0	0	0	0	0	14729	1189	41	3		3	SLC39A12	10	18331602	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	605040	18331602	117203145	374	86273											
CACNB2	783	broad.mit.edu	37	chr10	18690929	18690929	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaccgggaggcagtgcgcaGagaagcggagcggcaggccc	20	11	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18690929	T	T	18690929	3	4	82	1	0	0	0	0	1	0	0	0	2579	942	33	3	520	3	CACNB2	10	18690929	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	359327	18690929	116843818	375	86274											
CACNB2	783	broad.mit.edu	37	chr10	18690999	18690999	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtttcctccctgccaagaTctttgcaagttgtgctgtgc	9	12	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18690999	C	C	18690999	1	2	82	0	1	0	0	0	0	0	0	0	2579	1450	50	5		5	CACNB2	10	18690999	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	70	18690999	116843748	376	86275											
ARMC4	55130	broad.mit.edu	37	chr10	28270259	28270259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagtatttttatgttatGttatgttgtaaaaaaaaacc	5	3	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28270259	T	T	28270259	1	4	82	0	1	0	0	0	0	0	0	0	957	1392	48	3		3	ARMC4	10	28270259	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	9579260	28270259	107264488	377	86276											
MPP7	143098	broad.mit.edu	37	chr10	28527427	28527427	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcatttgcttaaagcaTgctgtatttcactgtgaaca	8	9	1	1	rs72382204		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28527427	C	C	28527427	1	2	82	0	1	0	0	0	0	0	0	0	9833	1479	51	5		5	MPP7	10	28527427	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	257168	28527427	107007320	378	86277											
LYZL2	119180	broad.mit.edu	37	chr10	30915723	30915723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtttccaaggctgaagCcccagtaattgtccaggcca	9	13	0	1	rs150609822		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30915723	A	A	30915723	3	1	82	1	0	0	0	0	1	0	0	0	9220	739	26	3	340	3	LYZL2	10	30915723	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2388296	30915723	104619024	379	86278											
NRP1	8829	broad.mit.edu	37	chr10	33468926	33468926	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacttcccagcctgtatagTgaaagatcaacagctcccca	6	14	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33468926	A	A	33468926	1	1	82	0	1	0	0	0	0	0	0	0	10755	1711	59	5		5	NRP1	10	33468926	3'UTR	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2553203	33468926	102065821	380	86279											
NRP1	8829	broad.mit.edu	37	chr10	33469171	33469171	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagacagcccccaggaggaCccccagggcactcatggcta	11	16	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33469171	G	G	33469171	3	3	82	1	0	0	0	0	1	0	0	0	10755	507	18	4	170	4	NRP1	10	33469171	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	245	33469171	102065576	381	86280											
ANKRD30A	91074	broad.mit.edu	37	chr10	37442585	37442585	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agataaaataaatggaaaatTagaaggtaagaaccgttttt	8	2	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37442585	C	C	37442585	3	2	82	1	0	0	0	0	1	0	0	0	658	1764	61	5	1675	5	ANKRD30A	10	37442585	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	3973414	37442585	98092162	382	86281											
ZNF33B	7582	broad.mit.edu	37	chr10	43078620	43078620	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatttgaaaatgtctgtctTagggttgatgtgaagatggc	12	3	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43078620	C	C	43078620	1	2	82	0	1	0	0	0	0	0	0	0	17981	1769	61	5		5	ZNF33B	10	43078620	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	5636035	43078620	92456127	383	86282											
MARCH8	220972	broad.mit.edu	37	chr10	45984984	45984984	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaactagaatttgcaaagcAcaacctactatatactagat	5	8	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45984984	G	G	45984984	1	3	82	0	1	0	0	0	0	0	0	0	9399	174	6	5		5	MARCH8	10	45984984	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2906364	45984984	89549763	384	86283											
PCDH15	65217	broad.mit.edu	37	chr10	55590995	55590995	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccatcaatattttacaaCgcaaagccatgttaccagag	6	11	1	1	rs146515245	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55590995	T	T	55590995	1	4	82	0	1	0	0	0	0	0	0	0	11605	551	19	4		4	PCDH15	10	55590995	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	9606011	55590995	79943752	385	86284											
ARID5B	84159	broad.mit.edu	37	chr10	63852789	63852789	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccccagtacaaaactgtaGgctcagctctgcccagcagt	8	15	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63852789	C	C	63852789	4	2	82	1	0	0	0	0	0	0	0	0	924	995	35	4	3605	4	ARID5B	10	63852789	Nonstop_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	8261794	63852789	71681958	386	86285											
HERC4	26091	broad.mit.edu	37	chr10	69750850	69750850	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatttgatatactatttaAgacaataaatttgaaaattt	3	2	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69750850	C	C	69750850	1	2	82	0	1	0	0	0	0	0	0	0	7127	87	3	5		5	HERC4	10	69750850	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	5898061	69750850	65783897	387	86286											
ADK	132	broad.mit.edu	37	chr10	76287506	76287506	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcagacaccagttgtttcCtccactcccagacttaccac	4	16	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76287506	T	T	76287506	1	4	82	0	1	0	0	0	0	0	0	0	320	696	24	4		4	ADK	10	76287506	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6536656	76287506	59247241	388	86287											
DYDC2	84332	broad.mit.edu	37	chr10	82122102	82122102	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcatctcatatttatcctGaaataaatctgaattggtta	5	6	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82122102	T	T	82122102	1	4	82	0	1	0	0	0	0	0	0	0	4879	1305	45	3		3	DYDC2	10	82122102	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5834596	82122102	53412645	389	86288											
NRG3	10718	broad.mit.edu	37	chr10	84625062	84625062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaattgaggctgtgccttGccttggagggttagtcttat	12	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84625062	T	T	84625062	1	4	82	0	1	0	0	0	0	0	0	0	10744	1334	46	3		3	NRG3	10	84625062	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2502960	84625062	50909685	390	86289											
PGAM1	5223	broad.mit.edu	37	chr10	99190889	99190889	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggcattgtcaagcatctgGagggtatgtatgttttttca	13	5	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99190889	C	C	99190889	3	2	82	1	0	0	0	0	1	0	0	0	11868	1175	41	4	602	4	PGAM1	10	99190889	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	14565827	99190889	36343858	391	86290											
EXOSC1	51013	broad.mit.edu	37	chr10	99202940	99202940	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactgcagttctggtatggtCatgatttcagtattgaatgg	11	6	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99202940	G	G	99202940	1	3	82	0	1	0	0	0	0	0	0	0	5355	841	29	4		4	EXOSC1	10	99202940	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	12051	99202940	36331807	392	86291											
SEMA4G	57715	broad.mit.edu	37	chr10	102738135	102738135	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcccgtggcttcacaggCctcatcattggtgagcaggc	12	14	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102738135	T	T	102738135	2	4	82	1	0	0	0	0	0	0	0	1	14149	726	26	4		4	SEMA4G	10	102738135	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3535195	102738135	32796612	393	86292											
CYP17A1	1586	broad.mit.edu	37	chr10	104594587	104594587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtctttgctcaggttGtctatgatgccttcattgta	10	8	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104594587	T	T	104594587	3	4	82	1	0	0	0	0	1	0	0	0	4180	1368	48	3	929	3	CYP17A1	10	104594587	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1856452	104594587	30940160	394	86293											
SORCS1	114815	broad.mit.edu	37	chr10	108380099	108380099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgcttctacactctaggGttcataagccatttcattcc	5	12	4	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108380099	T	T	108380099	1	4	82	0	1	0	0	0	0	0	0	0	15044	1276	44	3		3	SORCS1	10	108380099	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3785512	108380099	27154648	395	86294											
ATRNL1	26033	broad.mit.edu	37	chr10	116931129	116931129	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttcatatgaatttagtcAaaatggtgagttatttgaga	8	3	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931129	T	T	116931129	1	4	82	0	1	0	0	0	0	0	0	0	1211	145	5	5		5	ATRNL1	10	116931129	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	8551030	116931129	18603618	396	86295											
ATRNL1	26033	broad.mit.edu	37	chr10	117040923	117040923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatttgtaacaaacttaCcagctgtaaaagctgttcac	7	9	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117040923	A	A	117040923	3	1	82	1	0	0	0	0	1	0	0	0	1211	507	18	3	2213	3	ATRNL1	10	117040923	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	109794	117040923	18493824	397	86296											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118359684	118359684	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcctttgagtctgtaagcTattgtcctgcctcgagcaac	9	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118359684	C	C	118359684	1	2	82	0	1	0	0	0	0	0	0	0	12245	1537	53	5		5	PNLIPRP1	10	118359684	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1318761	118359684	17175063	398	86297											
C10orf82	143379	broad.mit.edu	37	chr10	118424187	118424187	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatagtcctagtgctgggaTggggacatctggtaaacccc	12	9	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118424187	C	C	118424187	1	2	82	0	1	0	0	0	0	0	0	0	1631	1479	51	5		5	C10orf82	10	118424187	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	64503	118424187	17110560	399	86298											
BTBD16	118663	broad.mit.edu	37	chr10	124049435	124049435	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttactagctcaatcacctAagaagaccaaagaaaaatcc	4	11	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124049435	T	T	124049435	4	4	82	1	0	0	0	0	0	1	0	0	1550	363	13	5	415	5	BTBD16	10	124049435	Nonsense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	5625248	124049435	11485312	400	86299											
ADAM12	8038	broad.mit.edu	37	chr10	127759974	127759974	+	Intron	DEL	C	-	-													catctggctgtacagttcctCcaagttctctcttctttgcc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127759974	-	-	127759974	6	5	82	0	1	1	0	1	0	0	0	0	236	870	30	0		0	ADAM12	10	127759974	Intron	DEL	C	TCGA-17-Z053-01A-01W-0747-08	3710539	127759974	7774773	401	86300											
TRIM21	6737	broad.mit.edu	37	chr11	4406748	4406748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggaggcacctgaaggtGgaggggagtctgggggtagg	22	5	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4406748	T	T	4406748	3	4	82	1	0	0	0	0	1	0	0	0	16619	1348	47	2	236	2	TRIM21	11	4406748	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08		4406748	130599768	402	86301											
OR51D1	390038	broad.mit.edu	37	chr11	4661248	4661248	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcccatgtacctcttcctGgccatgctttccactattga	7	14	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4661248	C	C	4661248	2	2	82	1	0	0	0	0	0	0	0	1	11187	1335	47	4		4	OR51D1	11	4661248	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	254500	4661248	130345268	403	86302											
OR52N5	390075	broad.mit.edu	37	chr11	5799408	5799408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaaggtggcaagctcagCcttggcaatgatagggttgg	16	7	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5799408	A	A	5799408	3	1	82	1	0	0	0	0	1	0	0	0	11224	739	26	3	521	3	OR52N5	11	5799408	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1138160	5799408	129207108	404	86303											
NLRP14	338323	broad.mit.edu	37	chr11	7063910	7063910	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgttttttatctcaatgGgagagaaattaaccagctga	9	5	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7063910	T	T	7063910	3	4	82	1	0	0	0	0	1	0	0	0	10571	1232	43	2	663	2	NLRP14	11	7063910	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1264502	7063910	127942606	405	86304											
NLRP14	338323	broad.mit.edu	37	chr11	7079571	7079571	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttctttggctctcatcagCaataaaagactgacacattt	5	10	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7079571	G	G	7079571	3	3	82	1	0	0	0	0	1	0	0	0	10571	709	25	4	2549	4	NLRP14	11	7079571	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	15661	7079571	127926945	406	86305											
MICAL2	9645	broad.mit.edu	37	chr11	12265428	12265428	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgagacatgggtctcctttCtttgccttcttgagtgcaca	9	11	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12265428	T	T	12265428	1	4	82	0	1	0	0	0	0	0	0	0	9663	928	32	4		4	MICAL2	11	12265428	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5185857	12265428	122741088	407	86306											
SLC6A5	9152	broad.mit.edu	37	chr11	20639405	20639405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtgtatgcatcattggCtaaaggaatcaagacttcag	9	7	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20639405	A	A	20639405	3	1	82	1	0	0	0	0	1	0	0	0	14801	797	28	3	1261	3	SLC6A5	11	20639405	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	8373977	20639405	114367111	408	86307											
NELL1	4745	broad.mit.edu	37	chr11	20906900	20906900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttctcttcatacagcaGctaatggcatgcatacttca	7	11	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20906900	T	T	20906900	1	4	82	0	1	0	0	0	0	0	0	0	10428	986	34	3		3	NELL1	11	20906900	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	267495	20906900	114099616	409	86308											
ANO3	63982	broad.mit.edu	37	chr11	26664849	26664849	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatttgtcactcaatggcGgaggcctttgccagcccgag	11	12	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26664849	A	A	26664849	3	1	82	1	0	0	0	0	1	0	0	0	698	1116	39	4	2486	4	ANO3	11	26664849	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5757949	26664849	108341667	410	86309											
TRIM44	54765	broad.mit.edu	37	chr11	35747573	35747573	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccttcatctagtggacatCcaagaggcaatggccacagc	10	13	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35747573	G	G	35747573	3	3	82	1	0	0	0	0	1	0	0	0	16644	845	30	4	859	4	TRIM44	11	35747573	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	9082724	35747573	99258943	411	86310											
FOLH1	2346	broad.mit.edu	37	chr11	49221942	49221942	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggattgaatttgctttgcAagctgaaagttttgttctgt	11	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49221942	T	T	49221942	2	4	82	1	0	0	0	0	0	0	0	1	6037	117	5	5		5	FOLH1	11	49221942	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	13474369	49221942	85784574	412	86311											
TRIM48	79097	broad.mit.edu	37	chr11	55035270	55035270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattgggagagtatagcccCgccaagggatcctaccaggc	12	11	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55035270	A	A	55035270	1	1	82	0	1	0	0	0	0	0	0	0	16648	667	23	1		1	TRIM48	11	55035270	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5813328	55035270	79971246	413	86312											
SPRYD5	84767	broad.mit.edu	37	chr11	55648879	55648879	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatttattgtgttactattAaaaatggtaaaaacactaaa	4	4	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55648879	G	G	55648879	1	3	82	0	1	0	0	0	0	0	0	0	15229	377	13	5		5	SPRYD5	11	55648879	5'Flank	SNP	A	TCGA-17-Z053-01A-01W-0747-08	613609	55648879	79357637	414	86313											
OR10AG1	282770	broad.mit.edu	37	chr11	55735507	55735507	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtttccccaattactacagGaattgtgatggtccaggaag	10	8	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55735507	A	A	55735507	3	1	82	1	0	0	0	0	1	0	0	0	10991	1174	41	4	475	4	OR10AG1	11	55735507	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	86628	55735507	79271009	415	86314											
OR5M9	390162	broad.mit.edu	37	chr11	56230199	56230199	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcctgccatcggcagagcGcatgcgtagcacagctacta	10	15	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56230199	C	C	56230199	3	2	82	1	0	0	0	0	1	0	0	0	11271	1087	38	4	255	4	OR5M9	11	56230199	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	494692	56230199	78776317	416	86315											
MS4A6A	64231	broad.mit.edu	37	chr11	59939503	59939503	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgacagtgaaataatgGttttttttaatgttcattac	6	3	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59939503	T	T	59939503	1	4	82	0	1	0	0	0	0	0	0	0	9958	1276	44	3		3	MS4A6A	11	59939503	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3709304	59939503	75067013	417	86316											
MS4A6A	64231	broad.mit.edu	37	chr11	59949104	59949104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttcaggctatcctgccCctggttggtgggttcgggtt	13	10	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59949104	A	A	59949104	3	1	82	1	0	0	0	0	1	0	0	0	9958	623	22	2	700	2	MS4A6A	11	59949104	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	9601	59949104	75057412	418	86317											
MS4A5	64232	broad.mit.edu	37	chr11	60201182	60201182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctccgcactcattgcttTgtttgtagtacaggctggac	9	10	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60201182	C	C	60201182	1	2	82	0	1	0	0	0	0	0	0	0	9957	1827	63	5		5	MS4A5	11	60201182	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	252078	60201182	74805334	419	86318											
MS4A1	931	broad.mit.edu	37	chr11	60230706	60230706	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaaatatatgagtaggaaAtattattgggttaaagtaat	11	0	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60230706	T	T	60230706	1	4	82	0	1	0	0	0	0	0	0	0	9948	116	4	5		5	MS4A1	11	60230706	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	29524	60230706	74775810	420	86319											
PGA3	643834	broad.mit.edu	37	chr11	60974818	60974818	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgagacaggacagaacctgGggtctcttgggctccaaggg	15	10	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60974818	A	A	60974818	1	1	82	0	1	0	0	0	0	0	0	0	11866	1247	43	4		4	PGA3	11	60974818	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	744112	60974818	74031698	421	86320											
FIBP	9158	broad.mit.edu	37	chr11	65655166	65655166	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcttcttgcccagcacctCccgaacaaaggcctcatcaa	6	17	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65655166	A	A	65655166	4	1	82	1	0	0	0	0	0	1	0	0	5943	864	30	3	810	3	FIBP	11	65655166	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4680348	65655166	69351350	422	86321											
MYEOV	26579	broad.mit.edu	37	chr11	69063509	69063509	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatggaaattatgtgggcgCgaatggatgtggctctgcgc	15	8	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69063509	T	T	69063509	4	4	82	1	0	0	0	0	0	1	0	0	10119	760	27	4	598	4	MYEOV	11	69063509	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3408343	69063509	65943007	423	86322											
PAAF1	80227	broad.mit.edu	37	chr11	73627750	73627750	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaggtcttctgcagagtgGaaatttttattggctttaac	10	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73627750	T	T	73627750	1	4	82	0	1	0	0	0	0	0	0	0	11456	1189	41	3		3	PAAF1	11	73627750	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4564241	73627750	61378766	424	86323											
C2CD3	26005	broad.mit.edu	37	chr11	73824703	73824703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacactccagcctgggCgaaagagtgagactccatgt	10	14	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73824703	A	A	73824703	1	1	82	0	1	0	0	0	0	0	0	0	2176	783	27	3		3	C2CD3	11	73824703	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	196953	73824703	61181813	425	86324											
SLCO2B1	11309	broad.mit.edu	37	chr11	74904192	74904192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgcttgaactgagcagGgcaggagggcagtctctgct	15	9	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74904192	T	T	74904192	1	4	82	0	1	0	0	0	0	0	0	0	14841	1247	43	2		2	SLCO2B1	11	74904192	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1079489	74904192	60102324	426	86325											
GDPD4	220032	broad.mit.edu	37	chr11	76996198	76996198	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatcagagacaagacaaaTgaaattaccaggcacggcaa	8	9	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76996198	G	G	76996198	1	3	82	0	1	0	0	0	0	0	0	0	6390	1479	51	5		5	GDPD4	11	76996198	5'UTR	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2092006	76996198	58010318	427	86326											
PICALM	8301	broad.mit.edu	37	chr11	85692752	85692752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagaaaacactaaataaCacacggagaaaacaatgtgt	8	6	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85692752	A	A	85692752	1	1	82	0	1	0	0	0	0	0	0	0	11975	493	17	3		3	PICALM	11	85692752	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	8696554	85692752	49313764	428	86327											
FOLH1B	219595	broad.mit.edu	37	chr11	89429927	89429927	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgactcccttctgtaatAtcactttttctgctaattat	3	9	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89429927	C	C	89429927	1	2	82	0	1	0	0	0	0	0	0	0	6038	464	16	5		5	FOLH1B	11	89429927	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3737175	89429927	45576589	429	86328											
FOLH1B	219595	broad.mit.edu	37	chr11	89431803	89431803	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgtattgaatttgtgtGgtatgtcactcaaagaataa	8	5	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89431803	T	T	89431803	1	4	82	0	1	0	0	0	0	0	0	0	6038	1363	47	2		2	FOLH1B	11	89431803	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1876	89431803	45574713	430	86329											
NAALAD2	10003	broad.mit.edu	37	chr11	89892360	89892360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactttaaaatttctccttAgaaattgtggtagccttttt	5	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89892360	G	G	89892360	1	3	82	0	1	0	0	0	0	0	0	0	10222	435	15	5		5	NAALAD2	11	89892360	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	460557	89892360	45114156	431	86330											
FAT3	120114	broad.mit.edu	37	chr11	92087588	92087588	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatatcagatggaaatacGgatagttgctttaatattga	8	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92087588	T	T	92087588	2	4	82	1	0	0	0	0	0	0	0	1	5748	1103	39	1		1	FAT3	11	92087588	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2195228	92087588	42918928	432	86331											
DYNC2H1	79659	broad.mit.edu	37	chr11	103178462	103178462	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaacaaggaattgaatactCttcaacctaaagataccttt	4	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103178462	T	T	103178462	3	4	82	1	0	0	0	0	1	0	0	0	4886	913	32	4	11730	4	DYNC2H1	11	103178462	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	11090874	103178462	31828054	433	86332											
CADM1	23705	broad.mit.edu	37	chr11	115069179	115069179	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacagacgggaacagaggaTtggaggaagggaagaaacag	16	5	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115069179	C	C	115069179	1	2	82	0	1	0	0	0	0	0	0	0	2592	1508	52	5		5	CADM1	11	115069179	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	11890717	115069179	19937337	434	86333											
DSCAML1	57453	broad.mit.edu	37	chr11	117375700	117375700	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaccgagcagttgagcacAccagctttgccgtagatgcc	10	14	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117375700	G	G	117375700	2	3	82	1	0	0	0	0	0	0	0	1	4809	146	6	5		5	DSCAML1	11	117375700	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2306521	117375700	17630816	435	86334											
C11orf63	79864	broad.mit.edu	37	chr11	122830081	122830081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctgaaatctcactgctGgaaatactgcagaacagaca	7	10	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122830081	T	T	122830081	2	4	82	1	0	0	0	0	0	0	0	1	1666	1335	47	2		2	C11orf63	11	122830081	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5454381	122830081	12176435	436	86335											
GRAMD1B	57476	broad.mit.edu	37	chr11	123469788	123469788	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaactccaccgagttttGtgcctcttcacttggattct	8	11	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123469788	C	C	123469788	1	2	82	0	1	0	0	0	0	0	0	0	6814	1392	48	4		4	GRAMD1B	11	123469788	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	639707	123469788	11536728	437	86336											
TMEM225	338661	broad.mit.edu	37	chr11	123756274	123756274	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaagctgaagtagtctatAaaacagagaagatagataac	9	5	1	5			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123756274	G	G	123756274	1	3	82	0	1	0	0	0	0	0	0	0	16270	377	13	5		5	TMEM225	11	123756274	5'UTR	SNP	A	TCGA-17-Z053-01A-01W-0747-08	286486	123756274	11250242	438	86337											
OR10G9	219870	broad.mit.edu	37	chr11	123894265	123894265	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgtgtgatgcaccgccCatcctgaaactggcctgtgc	10	12	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123894265	A	A	123894265	2	1	82	1	0	0	0	0	0	0	0	1	10998	581	21	2		2	OR10G9	11	123894265	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	137991	123894265	11112251	439	86338											
OR8B4	283162	broad.mit.edu	37	chr11	124294723	124294723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctgttctgataatccCacaaggataaactcagtcac	7	11	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124294723	A	A	124294723	2	1	82	1	0	0	0	0	0	0	0	1	11323	581	21	2		2	OR8B4	11	124294723	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	400458	124294723	10711793	440	86339											
ROBO4	54538	broad.mit.edu	37	chr11	124766351	124766351	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacggcaggtcagtccatcaGggtgtacccaggtctgccca	13	13	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124766351	A	A	124766351	1	1	82	0	1	0	0	0	0	0	0	0	13627	1015	35	4		4	ROBO4	11	124766351	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	471628	124766351	10240165	441	86340											
ETS1	2113	broad.mit.edu	37	chr11	128332264	128332264	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttcagtgccatcactcgtCggcatctggcttgacgtcca	9	15	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128332264	T	T	128332264	3	4	82	1	0	0	0	0	1	0	0	0	5317	884	31	4	11	4	ETS1	11	128332264	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3565913	128332264	6674252	442	86341											
ZBTB44	29068	broad.mit.edu	37	chr11	130166195	130166195	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagattccttctgctcttTacattccttaagaagaaccg	6	10	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130166195	C	C	130166195	1	2	82	0	1	0	0	0	0	0	0	0	17671	1769	61	5		5	ZBTB44	11	130166195	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1833931	130166195	4840321	443	86342											
SLC6A13	6540	broad.mit.edu	37	chr12	344181	344181	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctaggtgcgggggttcccCgtcagagtgcagggaaagcc	17	10	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	344181	G	G	344181	1	3	82	0	1	0	0	0	0	0	0	0	14790	667	23	4		4	SLC6A13	12	344181	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08		344181	133507714	444	86343											
A2ML1	144568	broad.mit.edu	37	chr12	9013836	9013836	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acattttctccctggctgggGaaatggacatcagaaacatt	9	9	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9013836	A	A	9013836	3	1	82	1	0	0	0	0	1	0	0	0	5	1175	41	4	3555	4	A2ML1	12	9013836	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	8669655	9013836	124838059	445	86344											
GUCY2C	2984	broad.mit.edu	37	chr12	14769752	14769752	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcaacaacacctgagacaAgaatcctaaatcaagaagaa	5	9	2	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14769752	T	T	14769752	1	4	82	0	1	0	0	0	0	0	0	0	6961	87	3	5		5	GUCY2C	12	14769752	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	5755916	14769752	119082143	446	86345											
PDE3A	5139	broad.mit.edu	37	chr12	20704681	20704681	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccagcgaggtggtactggCgggagagcggctgagagaga	20	7	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20704681	T	T	20704681	1	4	82	0	1	0	0	0	0	0	0	0	11731	783	27	4		4	PDE3A	12	20704681	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	5934929	20704681	113147214	447	86346											
SLCO1B3	28234	broad.mit.edu	37	chr12	21242932	21242932	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtaaggaaaaaatcccaTggaaaggataccaaagtatt	9	5	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21242932	C	C	21242932	2	2	82	1	0	0	0	0	0	0	0	1	14838	1461	51	5		5	SLCO1B3	12	21242932	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08	538251	21242932	112608963	448	86347											
ST8SIA1	6489	broad.mit.edu	37	chr12	22408191	22408191	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggagagaaggcagaggccGcgctgtgggtgctctctctt	16	9	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22408191	C	C	22408191	1	2	82	0	1	0	0	0	0	0	0	0	15349	1102	38	4		4	ST8SIA1	12	22408191	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1165259	22408191	111443704	449	86348											
TSPAN11	441631	broad.mit.edu	37	chr12	31131475	31131475	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccgatcccagtggtgaccGtcctctctctttgctgctag	9	15	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31131475	A	A	31131475	1	1	82	0	1	0	0	0	0	0	0	0	16760	1160	40	4		4	TSPAN11	12	31131475	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	8723284	31131475	102720420	450	86349											
DNM1L	10059	broad.mit.edu	37	chr12	32873644	32873656	+	Frame_Shift_Del	DEL	CGTGATGAGTATG	-	-													agagtgtaactgattcaatcCgtgatgagtatgcttttctt							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32873656	-	-	32873644	7	5	82	1	0	1	0	1	0	0	0	0	4711	652	23	0	817	0	DNM1L	12	32873644	Frame_Shift_Del	DEL	CGTGATGAGTATG	TCGA-17-Z053-01A-01W-0747-08	1742169	32873644	100978251	451	86350											
SCN8A	6334	broad.mit.edu	37	chr12	52106128	52106128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcatccttccttctgtgGcagatttttacagttcctct	7	11	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52106128	T	T	52106128	1	4	82	0	1	0	0	0	0	0	0	0	14037	1218	42	3		3	SCN8A	12	52106128	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	19232484	52106128	81745767	452	86351											
RARG	5916	broad.mit.edu	37	chr12	53609510	53609510	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagcatggcttgtagacccGaggaggcggagggggcgagg	21	7	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53609510	A	A	53609510	3	1	82	1	0	0	0	0	1	0	0	0	13162	1057	37	4	1139	4	RARG	12	53609510	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1503382	53609510	80242385	453	86352											
ATP5G2	517	broad.mit.edu	37	chr12	54070073	54070073	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcgccgactgcagaaatgAggccaactccgcggagtaag	14	11	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54070073	T	T	54070073	1	4	82	0	1	0	0	0	0	0	0	0	1158	319	11	5		5	ATP5G2	12	54070073	5'UTR	SNP	A	TCGA-17-Z053-01A-01W-0747-08	460563	54070073	79781822	454	86353											
NCKAP1L	3071	broad.mit.edu	37	chr12	54911262	54911262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggtagtttactctgtgCtttgaaatccatttttaaag	7	6	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54911262	A	A	54911262	1	1	82	0	1	0	0	0	0	0	0	0	10317	812	28	3		3	NCKAP1L	12	54911262	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	841189	54911262	78940633	455	86354											
OR6C4	341418	broad.mit.edu	37	chr12	55945511	55945511	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgacccaggtagatttctgTgtctccaacattctgaatca	7	10	4	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55945511	C	C	55945511	2	2	82	1	0	0	0	0	0	0	0	1	11287	1702	59	5		5	OR6C4	12	55945511	Silent	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1034249	55945511	77906384	456	86355											
FAM19A2	338811	broad.mit.edu	37	chr12	62261015	62261015	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatacctagtaaaatttaaCagaccagtggaggcaaaaca	7	8	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62261015	G	G	62261015	1	3	82	0	1	0	0	0	0	0	0	0	5579	493	17	4		4	FAM19A2	12	62261015	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6315504	62261015	71590880	457	86356											
DPY19L2	283417	broad.mit.edu	37	chr12	63991544	63991544	+	Intron	DEL	C	-	-													agattttaaaaaacctagagCaaaaaactcatattagtaga							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63991544	-	-	63991544	6	5	82	0	1	1	0	1	0	0	0	0	4781	725	25	0		0	DPY19L2	12	63991544	Intron	DEL	C	TCGA-17-Z053-01A-01W-0747-08	1730529	63991544	69860351	458	86357											
IL22	50616	broad.mit.edu	37	chr12	68645463	68645463	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctggaattaaagctcttAgtaattttgcccacaatgac	6	10	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68645463	C	C	68645463	1	2	82	0	1	0	0	0	0	0	0	0	7742	435	15	5		5	IL22	12	68645463	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	4653919	68645463	65206432	459	86358											
PTPRR	5801	broad.mit.edu	37	chr12	71066181	71066181	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtagactgggaagtggagCagctgtggtcattggaaaga	17	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71066181	G	G	71066181	1	3	82	0	1	0	0	0	0	0	0	0	12918	725	25	4		4	PTPRR	12	71066181	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2420718	71066181	62785714	460	86359											
TRHDE	29953	broad.mit.edu	37	chr12	73014989	73014989	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatcctaccaacatgagtaCtgttttattttcttatcctc	4	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73014989	G	G	73014989	1	3	82	0	1	0	0	0	0	0	0	0	16603	580	20	4		4	TRHDE	12	73014989	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1948808	73014989	60836906	461	86360											
NAV3	89795	broad.mit.edu	37	chr12	78571477	78571477	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagatctcggtaaagtggagTgcgatgcatgaatactgcaa	12	6	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78571477	C	C	78571477	1	2	82	0	1	0	0	0	0	0	0	0	10279	1711	59	5		5	NAV3	12	78571477	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	5556488	78571477	55280418	462	86361											
SYT1	6857	broad.mit.edu	37	chr12	79747162	79747162	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtaaatgccaatggacCtacaattttcaaattctaat	5	8	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79747162	T	T	79747162	1	4	82	0	1	0	0	0	0	0	0	0	15584	696	24	4		4	SYT1	12	79747162	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1175685	79747162	54104733	463	86362											
TMTC2	160335	broad.mit.edu	37	chr12	83379884	83379884	+	Intron	SNP	G	C	C													tctccatgcagaccgggataGatgggtttgaggtactgttt							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83379884	C	C	83379884	1	2	82	0	1	0	0	0	0	0	0	0	16384	957	33	4		4	TMTC2	12	83379884	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3632722	83379884	50472011	464	86363	390	2									
TMTC2	160335	broad.mit.edu	37	chr12	83379890	83379890	+	Intron	SNP	T	A	A													tgcagaccgggatagatgggTttgaggtactgttttacagc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83379890	A	A	83379890	1	1	82	0	1	0	0	0	0	0	0	0	16384	1740	60	5		5	TMTC2	12	83379890	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	6	83379890	50472005	465	86364	390	2									
CCDC38	120935	broad.mit.edu	37	chr12	96265869	96265869	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagtatttgatgaatgatCtcccatgctaaataatagct	7	6	1	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96265869	T	T	96265869	1	4	82	0	1	0	0	0	0	0	0	0	2837	928	32	4		4	CCDC38	12	96265869	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	12885979	96265869	37586026	466	86365											
GNPTAB	79158	broad.mit.edu	37	chr12	102153823	102153823	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttaccaggttgggatcataGtaggattcctgagttggtgg	14	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102153823	C	C	102153823	4	2	82	1	0	0	0	0	0	1	0	0	6609	1024	36	4	560	4	GNPTAB	12	102153823	Nonsense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5887954	102153823	31698072	467	86366											
PAH	5053	broad.mit.edu	37	chr12	103249226	103249226	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctgccatcacttgctacAgtgaatttcatacattattt	6	9	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103249226	G	G	103249226	1	3	82	0	1	0	0	0	0	0	0	0	11488	203	7	5		5	PAH	12	103249226	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1095403	103249226	30602669	468	86367											
UNG	7374	broad.mit.edu	37	chr12	109547637	109547637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgatctttttcagaagCggcaccatgtactacagacg	8	10	3	3	rs143034537		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109547637	T	T	109547637	3	4	82	1	0	0	0	0	1	0	0	0	17125	759	27	4	936	4	UNG	12	109547637	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6298411	109547637	24304258	469	86368											
TRAFD1	10906	broad.mit.edu	37	chr12	112572736	112572736	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacttgctgttgttcgtaaaTgtattctgtttgctattgtg	9	5	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112572736	A	A	112572736	1	1	82	0	1	0	0	0	0	0	0	0	16571	1479	51	5		5	TRAFD1	12	112572736	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	3025099	112572736	21279159	470	86369											
MSI1	4440	broad.mit.edu	37	chr12	120800988	120800988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgagtcctgtggcctacCgccaccagcaggggctcgag	13	14	1	1	rs73221336	byFrequency;by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120800988	A	A	120800988	1	1	82	0	1	0	0	0	0	0	0	0	9969	667	23	1		1	MSI1	12	120800988	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	8228252	120800988	13050907	471	86370											
CLIP1	6249	broad.mit.edu	37	chr12	122862099	122862099	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtttctgagggatgtttGaaggggtggagggggaggaa	21	1	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122862099	C	C	122862099	4	2	82	1	0	0	0	0	0	1	0	0	3564	1294	45	4	3881	4	CLIP1	12	122862099	Nonsense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2061111	122862099	10989796	472	86371											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124235920	124235920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttaaaacattgatgttGgctgggtgtggtggctcaca	12	5	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124235920	T	T	124235920	1	4	82	0	1	0	0	0	0	0	0	0	1173	1363	47	2		2	ATP6V0A2	12	124235920	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1373821	124235920	9615975	473	86372											
GPR133	283383	broad.mit.edu	37	chr12	131488757	131488757	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgtggccaaaatcctgcccAagaccgtgaattcctcccat	7	16	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131488757	T	T	131488757	4	4	82	1	0	0	0	0	0	1	0	0	6708	131	5	5	1213	5	GPR133	12	131488757	Nonsense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	7252837	131488757	2363138	474	86373											
EP400	57634	broad.mit.edu	37	chr12	132491222	132491222	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattttgacgagctgtcattCttttatttgttcatcactgc	6	8	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132491222	T	T	132491222	1	4	82	0	1	0	0	0	0	0	0	0	5191	928	32	4		4	EP400	12	132491222	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1002465	132491222	1360673	475	86374											
EP400	57634	broad.mit.edu	37	chr12	132491471	132491471	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctatttgctaggacttacCtataggccagtgtgtttgat	9	8	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132491471	T	T	132491471	1	4	82	0	1	0	0	0	0	0	0	0	5191	696	24	4		4	EP400	12	132491471	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	249	132491471	1360424	476	86375											
TPTE2	93492	broad.mit.edu	37	chr13	20077497	20077497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtaaaactagctttcattaCtctgcacataaaccagttaa	4	10	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20077497	A	A	20077497	1	1	82	0	1	0	0	0	0	0	0	0	16555	580	20	3		3	TPTE2	13	20077497	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08		20077497	95092381	477	86376											
LMO7	4008	broad.mit.edu	37	chr13	76416135	76416135	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaggtatgtccccacagcCagagggtacaaaggcttagc	13	10	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76416135	G	G	76416135	1	3	82	0	1	0	0	0	0	0	0	0	8929	609	21	4		4	LMO7	13	76416135	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	56338638	76416135	38753743	478	86377											
SUPT16H	11198	broad.mit.edu	37	chr14	21830303	21830303	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacaatgaaatgtttctgaGagtaccactccagacaagat	8	8	1	5			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21830303	T	T	21830303	1	4	82	0	1	0	0	0	0	0	0	0	15514	957	33	3		3	SUPT16H	14	21830303	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08		21830303	85519237	479	86378											
MYH7	4625	broad.mit.edu	37	chr14	23888945	23888945	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggatctgagaaccagGcagaggaagggaagtgggaa	20	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23888945	A	A	23888945	1	1	82	0	1	0	0	0	0	0	0	0	10133	1218	42	4		4	MYH7	14	23888945	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2058642	23888945	83460595	480	86379											
RALGAPA1	253959	broad.mit.edu	37	chr14	36219967	36219967	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagaaaaaacctacattttTaaatacttgagaaaatattg	4	4	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36219967	A	A	36219967	1	1	82	0	1	0	0	0	0	0	0	0	13121	1769	61	5		5	RALGAPA1	14	36219967	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	12331022	36219967	71129573	481	86380											
SEC23A	10484	broad.mit.edu	37	chr14	39508297	39508297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttttgaaaggaggaaacGggccttaaaagcaaagaaga	12	5	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39508297	A	A	39508297	3	1	82	1	0	0	0	0	1	0	0	0	14104	1116	39	4	159	4	SEC23A	14	39508297	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3288330	39508297	67841243	482	86381											
FANCM	57697	broad.mit.edu	37	chr14	45644575	45644575	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaagaaaataatcacgGtattatagattctgtagata	6	3	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45644575	A	A	45644575	3	1	82	1	0	0	0	0	1	0	0	0	5728	1261	44	4	2672	4	FANCM	14	45644575	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6136278	45644575	61704965	483	86382											
L2HGDH	79944	broad.mit.edu	37	chr14	50732235	50732235	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagaaaaaaaatctttatGagagaaaggaattctttatt	7	3	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50732235	C	C	50732235	1	2	82	0	1	0	0	0	0	0	0	0	8662	1305	45	4		4	L2HGDH	14	50732235	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5087660	50732235	56617305	484	86383											
L2HGDH	79944	broad.mit.edu	37	chr14	50760887	50760887	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggatcagcctcaggccCgggacaccattctggaggcc	13	14	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50760887	A	A	50760887	2	1	82	1	0	0	0	0	0	0	0	1	8662	639	23	1		1	L2HGDH	14	50760887	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	28652	50760887	56588653	485	86384											
KTN1	3895	broad.mit.edu	37	chr14	56119936	56119936	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtaccatagttttgttGttgtttaaataagttagctt	8	3	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56119936	A	A	56119936	1	1	82	0	1	0	0	0	0	0	0	0	8657	1392	48	4		4	KTN1	14	56119936	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5359049	56119936	51229604	486	86385											
RTN1	6252	broad.mit.edu	37	chr14	60213011	60213011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggaggggccgggtgtacCcagctcctcagggctctctg	15	12	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60213011	A	A	60213011	3	1	82	1	0	0	0	0	1	0	0	0	13836	623	22	2	1997	2	RTN1	14	60213011	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4093075	60213011	47136529	487	86386											
C14orf135	64430	broad.mit.edu	37	chr14	60622663	60622663	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagtcccaaaactgtatttGagtttggactgatttatttc	7	6	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60622663	A	A	60622663	1	1	82	0	1	0	0	0	0	0	0	0	1758	1305	45	4		4	C14orf135	14	60622663	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	409652	60622663	46726877	488	86387											
FAM71D	161142	broad.mit.edu	37	chr14	67666375	67666375	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacttctggcagctcagaacCcgctctcccagcctgaccgc	9	18	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67666375	G	G	67666375	1	3	82	0	1	0	0	0	0	0	0	0	5661	638	22	4		4	FAM71D	14	67666375	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7043712	67666375	39683165	489	86388											
ARG2	384	broad.mit.edu	37	chr14	68112271	68112271	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctggctttgcactgtggaGagagtataagttgttttggc	13	7	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68112271	T	T	68112271	1	4	82	0	1	0	0	0	0	0	0	0	860	957	33	3		3	ARG2	14	68112271	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	445896	68112271	39237269	490	86389											
RGS6	9628	broad.mit.edu	37	chr14	72936600	72936600	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaggggatttaaagcaggtCttgctattttgttggaagta	12	5	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72936600	T	T	72936600	1	4	82	0	1	0	0	0	0	0	0	0	13418	928	32	4		4	RGS6	14	72936600	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4824329	72936600	34412940	491	86390											
NRXN3	9369	broad.mit.edu	37	chr14	79117460	79117460	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccactgggttatgataggatCgtaaggtcattgttgggatt	13	5	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79117460	A	A	79117460	1	1	82	0	1	0	0	0	0	0	0	0	10762	899	31	3		3	NRXN3	14	79117460	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6180860	79117460	28232080	492	86391											
SEL1L	6400	broad.mit.edu	37	chr14	81945972	81945972	+	Frame_Shift_Del	DEL	T	-	-													ttacgtttgtttcccgtatgTactgcaagaaatagacgacg							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81945972	-	-	81945972	7	5	82	1	0	1	0	1	0	0	0	0	14123	1638	57	0	233	0	SEL1L	14	81945972	Frame_Shift_Del	DEL	T	TCGA-17-Z053-01A-01W-0747-08	2828512	81945972	25403568	493	86392											
PTPN21	11099	broad.mit.edu	37	chr14	88945912	88945912	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcggcggtgaggggctcGctgacctcctgcagcgagtg	18	13	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88945912	A	A	88945912	2	1	82	1	0	0	0	0	0	0	0	1	12894	1078	38	4		4	PTPN21	14	88945912	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6999940	88945912	18403628	494	86393											
RTL1	388015	broad.mit.edu	37	chr14	101348343	101348343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaccatgaaggcagccCgtattggaagaatcttcatc	8	12	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101348343	A	A	101348343	3	1	82	1	0	0	0	0	1	0	0	0	13835	652	23	1	1297	1	RTL1	14	101348343	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	12402431	101348343	6001197	495	86394											
CDC42BPB	9578	broad.mit.edu	37	chr14	103430968	103430968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccagcttctggctgcggCgcaccttccacagcgggtcc	12	16	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103430968	A	A	103430968	3	1	82	1	0	0	0	0	1	0	0	0	3103	768	27	3	2614	3	CDC42BPB	14	103430968	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2082625	103430968	3918572	496	86395											
MARK3	4140	broad.mit.edu	37	chr14	103966507	103966507	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgaggcttccaactgaatAtgagaggaacgggagatatg	13	5	0	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103966507	T	T	103966507	3	4	82	1	0	0	0	0	1	0	0	0	9406	449	16	5	1952	5	MARK3	14	103966507	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	535539	103966507	3383033	497	86396											
OR4N4	283694	broad.mit.edu	37	chr15	22333345	22333345	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtgacattccatttccTtgttaaagaatgagcagaaa	7	8	0	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22333345	A	A	22333345	1	1	82	0	1	0	0	0	0	0	0	0	11172	1624	56	5		5	OR4N4	15	22333345	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08		22333345	80198047	498	86397											
OCA2	4948	broad.mit.edu	37	chr15	28200128	28200128	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcacaaaatcagcctgctGtatccagaaaacatttttcc	4	13	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28200128	C	C	28200128	1	2	82	0	1	0	0	0	0	0	0	0	10910	1392	48	4		4	OCA2	15	28200128	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5866783	28200128	74331264	499	86398											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32912452	32912452	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccccagcattttgagaggccGaggtgggcaaatcacttgag	13	10	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32912452	C	C	32912452	1	2	82	0	1	0	0	0	0	0	0	0	865	1073	37	4		4	ARHGAP11A	15	32912452	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4712324	32912452	69618940	500	86399											
RYR3	6263	broad.mit.edu	37	chr15	34157472	34157472	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctggacagtcaacttcccAtgaaataaagtccccttttt	5	11	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34157472	C	C	34157472	1	2	82	0	1	0	0	0	0	0	0	0	13881	232	8	5		5	RYR3	15	34157472	3'UTR	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1245020	34157472	68373920	501	86400											
TMCO5A	145942	broad.mit.edu	37	chr15	38243574	38243574	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgactaccttctgtcaccAcgtcatctttccaggattaa	5	13	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38243574	G	G	38243574	1	3	82	0	1	0	0	0	0	0	0	0	16122	174	6	5		5	TMCO5A	15	38243574	3'UTR	SNP	A	TCGA-17-Z053-01A-01W-0747-08	4086102	38243574	64287818	502	86401											
RHOV	171177	broad.mit.edu	37	chr15	41165855	41165855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccatctccccgcagacCagtagaggccgcgcccagct	10	19	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41165855	A	A	41165855	1	1	82	0	1	0	0	0	0	0	0	0	13455	609	21	2		2	RHOV	15	41165855	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2922281	41165855	61365537	503	86402											
TYRO3	7301	broad.mit.edu	37	chr15	41857295	41857295	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgctagtgtggcctggatgCcaggtgctgatggccgagct	16	10	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41857295	T	T	41857295	3	4	82	1	0	0	0	0	1	0	0	0	16940	739	26	4	761	4	TYRO3	15	41857295	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	691440	41857295	60674097	504	86403											
VPS39	23339	broad.mit.edu	37	chr15	42470654	42470654	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaattccttaccctcctGaggtaatgaaacggggcctt	9	10	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42470654	A	A	42470654	3	1	82	1	0	0	0	0	1	0	0	0	17336	1294	45	4	1862	4	VPS39	15	42470654	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	613359	42470654	60060738	505	86404											
CCNDBP1	23582	broad.mit.edu	37	chr15	43482491	43482491	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagacaggaacctaggttAttaatatatccttactgatt	8	6	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43482491	G	G	43482491	1	3	82	0	1	0	0	0	0	0	0	0	2949	464	16	5		5	CCNDBP1	15	43482491	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1011837	43482491	59048901	506	86405											
SLC30A4	7782	broad.mit.edu	37	chr15	45814155	45814155	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagtgagttggcaacacAactcacctacaagttctcca	8	11	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45814155	G	G	45814155	1	3	82	0	1	0	0	0	0	0	0	0	14671	145	5	5		5	SLC30A4	15	45814155	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2331664	45814155	56717237	507	86406											
SEMA6D	80031	broad.mit.edu	37	chr15	48063473	48063473	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagacatccagatggcacacCagaacttaatgctggatccc	9	12	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48063473	G	G	48063473	3	3	82	1	0	0	0	0	1	0	0	0	14155	595	21	4	2826	4	SEMA6D	15	48063473	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2249318	48063473	54467919	508	86407											
FBN1	2200	broad.mit.edu	37	chr15	48725323	48725323	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atggatggatcaagtggtctCccatttcccggaaattataa	9	8	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48725323	G	G	48725323	1	3	82	0	1	0	0	0	0	0	0	0	5759	870	30	4		4	FBN1	15	48725323	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	661850	48725323	53806069	509	86408											
CEP152	22995	broad.mit.edu	37	chr15	49031506	49031506	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctattatgtgcaaggaaacaCgaaattaagagaaaattaat	7	4	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49031506	T	T	49031506	1	4	82	0	1	0	0	0	0	0	0	0	3278	551	19	4		4	CEP152	15	49031506	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	306183	49031506	53499886	510	86409											
ALDH1A2	8854	broad.mit.edu	37	chr15	58287209	58287209	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacatcgctgaggaccatgTtttatgtgtctttaagagaa	9	7	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58287209	C	C	58287209	1	2	82	0	1	0	0	0	0	0	0	0	491	1740	60	5		5	ALDH1A2	15	58287209	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	9255703	58287209	44244183	511	86410											
IGDCC4	57722	broad.mit.edu	37	chr15	65682627	65682627	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgtggagctgtttgattcCgcatggacgtgggctggagg	18	6	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65682627	T	T	65682627	2	4	82	1	0	0	0	0	0	0	0	1	7639	639	23	4		4	IGDCC4	15	65682627	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7395418	65682627	36848765	512	86411											
MYO9A	4649	broad.mit.edu	37	chr15	72171958	72171958	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaacaaaaacaaggcactGgagaaatctcttacgaaaca	6	8	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72171958	A	A	72171958	1	1	82	0	1	0	0	0	0	0	0	0	10178	1363	47	4		4	MYO9A	15	72171958	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6489331	72171958	30359434	513	86412											
STOML1	9399	broad.mit.edu	37	chr15	74284679	74284679	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcacccgcgcggccaccCgcggcggcgcgggcgcagga	17	18	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74284679	A	A	74284679	1	1	82	0	1	0	0	0	0	0	0	0	15431	667	23	1		1	STOML1	15	74284679	5'Flank	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2112721	74284679	28246713	514	86413											
CYP1A2	1544	broad.mit.edu	37	chr15	75044554	75044554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcctggagaccttccgaCactcctccttcttgcccttc	5	18	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75044554	A	A	75044554	3	1	82	1	0	0	0	0	1	0	0	0	4183	478	17	3	1146	3	CYP1A2	15	75044554	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	759875	75044554	27486838	515	86414											
SCAPER	49855	broad.mit.edu	37	chr15	77087752	77087752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacacctgtgggagccagaCgaggagctggcactgtgcca	15	11	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77087752	T	T	77087752	3	4	82	1	0	0	0	0	1	0	0	0	13990	536	19	4	3699	4	SCAPER	15	77087752	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2043198	77087752	25443640	516	86415											
MTHFS	10588	broad.mit.edu	37	chr15	80181744	80181744	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccaagactatatttagcAactcctcttaacaattcctc	2	12	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80181744	T	T	80181744	1	4	82	0	1	0	0	0	0	0	0	0	10026	145	5	5		5	MTHFS	15	80181744	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3093992	80181744	22349648	517	86416											
AGBL1	123624	broad.mit.edu	37	chr15	87531454	87531454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaaaaaaacaacataccCttcagctttgcaagacaatg	4	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87531454	A	A	87531454	1	1	82	0	1	0	0	0	0	0	0	0	375	696	24	2		2	AGBL1	15	87531454	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7349710	87531454	14999938	518	86417											
FANCI	55215	broad.mit.edu	37	chr15	89807407	89807407	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaacatagccgaacatagAtgctttcatttcacatatag	6	9	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89807407	G	G	89807407	1	3	82	0	1	0	0	0	0	0	0	0	5726	348	12	5		5	FANCI	15	89807407	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2275953	89807407	12723985	519	86418											
C15orf42	90381	broad.mit.edu	37	chr15	90135399	90135399	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagttccgatttgatggaGtcatttgggtaaaacgtttt	11	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90135399	A	A	90135399	2	1	82	1	0	0	0	0	0	0	0	1	1809	1020	36	4		4	C15orf42	15	90135399	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	327992	90135399	12395993	520	86419											
ZNF710	374655	broad.mit.edu	37	chr15	90623002	90623002	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgagcgtggacagcagcgccGaggccagtgtcctcactgaa	14	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90623002	A	A	90623002	3	1	82	1	0	0	0	0	1	0	0	0	18243	1059	37	4	1950	4	ZNF710	15	90623002	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	487603	90623002	11908390	521	86420											
CHD2	1106	broad.mit.edu	37	chr15	93510728	93510728	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggagatgtcagcccttcAgaaacagtattacaagtaag	11	7	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93510728	C	C	93510728	3	2	82	1	0	0	0	0	1	0	0	0	3356	188	7	5	2240	5	CHD2	15	93510728	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	2887726	93510728	9020664	522	86421											
TSC2	7249	broad.mit.edu	37	chr16	2106267	2106267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgcctcccctccccagGgccggcccatttcaccctgg	9	20	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2106267	T	T	2106267	1	4	82	0	1	0	0	0	0	0	0	0	16731	1247	43	2		2	TSC2	16	2106267	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08		2106267	88248486	523	86422											
CREBBP	1387	broad.mit.edu	37	chr16	3778778	3778778	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attagctgcgggtttgatttGagaatgttcagcacctgctg	12	7	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3778778	C	C	3778778	2	2	82	1	0	0	0	0	0	0	0	1	3893	1277	45	4		4	CREBBP	16	3778778	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1672511	3778778	86575975	524	86423											
A2BP1	54715	broad.mit.edu	37	chr16	7726670	7726670	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttcattaacctcaactttAgctcagtagatttgggtaac	6	9	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7726670	T	T	7726670	1	4	82	0	1	0	0	0	0	0	0	0	3	435	15	5		5	A2BP1	16	7726670	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	3947892	7726670	82628083	525	86424											
ABAT	18	broad.mit.edu	37	chr16	8841973	8841973	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgcctgcaggagttaatGaaacagctgaatataattca	8	7	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8841973	C	C	8841973	3	2	82	1	0	0	0	0	1	0	0	0	27	1290	45	4	187	4	ABAT	16	8841973	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1115303	8841973	81512780	526	86425											
ABAT	18	broad.mit.edu	37	chr16	8870281	8870281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcaacatcatcaagcgGgaggacctgctaaataatgc	9	10	4	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8870281	T	T	8870281	2	4	82	1	0	0	0	0	0	0	0	1	27	1219	43	2		2	ABAT	16	8870281	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	28308	8870281	81484472	527	86426											
GRIN2A	2903	broad.mit.edu	37	chr16	9858337	9858337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggatagtgaatcctggcGtatggaatccacggatttct	12	8	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9858337	A	A	9858337	3	1	82	1	0	0	0	0	1	0	0	0	6845	1145	40	4	1334	4	GRIN2A	16	9858337	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	988056	9858337	80496416	528	86427											
FAM18A	780776	broad.mit.edu	37	chr16	10862004	10862004	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgatgaccacagagtgGcccccatagccgaggaagcc	12	13	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10862004	T	T	10862004	1	4	82	0	1	0	0	0	0	0	0	0	5565	1218	42	3		3	FAM18A	16	10862004	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1003667	10862004	79492749	529	86428											
MYH11	4629	broad.mit.edu	37	chr16	15835754	15835754	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagtggcttcacctgcaCacacacggttagcccatcat	8	15	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15835754	G	G	15835754	1	3	82	0	1	0	0	0	0	0	0	0	10125	493	17	4		4	MYH11	16	15835754	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4973750	15835754	74518999	530	86429											
GP2	2813	broad.mit.edu	37	chr16	20322604	20322604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaggccaccaggaaccCtgaaatacaagaaatatgac	9	11	0	3	rs35027086		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20322604	A	A	20322604	1	1	82	0	1	0	0	0	0	0	0	0	6647	695	24	2		2	GP2	16	20322604	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4486850	20322604	70032149	531	86430											
PDILT	204474	broad.mit.edu	37	chr16	20384313	20384313	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccccagctccccttcctccGgggaccatttactcactgac	7	19	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20384313	C	C	20384313	1	2	82	0	1	0	0	0	0	0	0	0	11768	1131	39	4		4	PDILT	16	20384313	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	61709	20384313	69970440	532	86431											
PDILT	204474	broad.mit.edu	37	chr16	20386364	20386364	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagacggcagtggtggcTgattcgtctcttcacttttt	12	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20386364	A	A	20386364	1	1	82	0	1	0	0	0	0	0	0	0	11768	1595	55	5		5	PDILT	16	20386364	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2051	20386364	69968389	533	86432											
DNAH3	55567	broad.mit.edu	37	chr16	21030852	21030852	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctggccttctgtggctttTgtaaagggctcacctgtctg	12	11	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21030852	C	C	21030852	1	2	82	0	1	0	0	0	0	0	0	0	4643	1827	63	5		5	DNAH3	16	21030852	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	644488	21030852	69323901	534	86433											
DNAH3	55567	broad.mit.edu	37	chr16	21045299	21045299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggatgtgagctttacctgCgtgtaaatcgccgagagctg	14	8	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21045299	A	A	21045299	3	1	82	1	0	0	0	0	1	0	0	0	4643	768	27	3	7263	3	DNAH3	16	21045299	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	14447	21045299	69309454	535	86434											
CRYM	1428	broad.mit.edu	37	chr16	21281246	21281246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagtggcaaaggtcaagGgagaccctagcagacgggta	15	7	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21281246	A	A	21281246	1	1	82	0	1	0	0	0	0	0	0	0	3953	1247	43	4		4	CRYM	16	21281246	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	235947	21281246	69073507	536	86435											
APOB48R	55911	broad.mit.edu	37	chr16	28508141	28508141	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcatgggagttctggccctGagcaaagaggagcaggagag	16	8	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28508141	A	A	28508141	2	1	82	1	0	0	0	0	0	0	0	1	788	1277	45	4		4	APOB48R	16	28508141	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	7226895	28508141	61846612	537	86436											
SRCAP	10847	broad.mit.edu	37	chr16	30723431	30723431	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattactgacattgctgcaGcagctgaaagtctccagccc	8	12	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30723431	A	A	30723431	3	1	82	1	0	0	0	0	1	0	0	0	15253	971	34	4	1806	4	SRCAP	16	30723431	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2215290	30723431	59631322	538	86437											
C16orf93	90835	broad.mit.edu	37	chr16	30771821	30771821	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caactgggcctcctttcatcAccctacacccaccacatgct	4	19	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30771821	C	C	30771821	1	2	82	0	1	0	0	0	0	0	0	0	1860	174	6	5		5	C16orf93	16	30771821	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	48390	30771821	59582932	539	86438											
IRX3	79191	broad.mit.edu	37	chr16	54318157	54318157	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacctcggggtttcttaCcgcctgggcacgggctggaa	13	13	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54318157	A	A	54318157	5	1	82	1	0	0	0	0	0	0	1	0	7915	521	18	3	61	3	IRX3	16	54318157	Splice_Site	SNP	C	TCGA-17-Z053-01A-01W-0747-08	23546336	54318157	36036596	540	86439											
BBS2	583	broad.mit.edu	37	chr16	56534696	56534696	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaatccactgggcataTggaaaatttatacatcttgc	7	9	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56534696	A	A	56534696	1	1	82	0	1	0	0	0	0	0	0	0	1343	1479	51	5		5	BBS2	16	56534696	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2216539	56534696	33820057	541	86440											
CDH8	1006	broad.mit.edu	37	chr16	61747904	61747904	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcatttctgatgatttcaGaggctcctgccatcggtaaa	9	10	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61747904	C	C	61747904	1	2	82	0	1	0	0	0	0	0	0	0	3146	957	33	4		4	CDH8	16	61747904	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5213208	61747904	28606849	542	86441											
KARS	3735	broad.mit.edu	37	chr16	75661934	75661934	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaagctgagaagcactctCaacattttttcacagctatc	6	10	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75661934	T	T	75661934	1	4	82	0	1	0	0	0	0	0	0	0	8050	841	29	4		4	KARS	16	75661934	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	13914030	75661934	14692819	543	86442											
ADAMTS18	170692	broad.mit.edu	37	chr16	77390016	77390016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcctgctttgtgaaccCatttttttgaaggataatct	6	7	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77390016	A	A	77390016	1	1	82	0	1	0	0	0	0	0	0	0	263	609	21	2		2	ADAMTS18	16	77390016	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1728082	77390016	12964737	544	86443											
BCMO1	53630	broad.mit.edu	37	chr16	81295630	81295630	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgggattacaggcaccCggccgaagtaaagcattttt	12	9	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81295630	T	T	81295630	1	4	82	0	1	0	0	0	0	0	0	0	1389	667	23	4		4	BCMO1	16	81295630	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3905614	81295630	9059123	545	86444											
ACSF3	197322	broad.mit.edu	37	chr16	89187217	89187217	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctcctgtaggttccgtgGggaccccactgcctggagta	12	14	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89187217	C	C	89187217	3	2	82	1	0	0	0	0	1	0	0	0	176	1232	43	4	1153	4	ACSF3	16	89187217	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	7891587	89187217	1167536	546	86445											
SPG7	6687	broad.mit.edu	37	chr16	89611153	89611153	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggccgactggaccggcaCgtcttcattgatctccccac	9	17	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89611153	T	T	89611153	2	4	82	1	0	0	0	0	0	0	0	1	15162	535	19	4		4	SPG7	16	89611153	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	423936	89611153	743600	547	86446											
TRPV3	162514	broad.mit.edu	37	chr17	3458001	3458001	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctcacagtgccgcagtcCgtgtcccgagctctccaaac	8	19	2	0	rs144003543	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3458001	T	T	3458001	1	4	82	0	1	0	0	0	0	0	0	0	16722	667	23	4		4	TRPV3	17	3458001	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08		3458001	77737209	548	86447											
CHRNE	1145	broad.mit.edu	37	chr17	4804455	4804455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcggcggatcacccccGggcagaagtcgatggcccac	16	14	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4804455	T	T	4804455	3	4	82	1	0	0	0	0	1	0	0	0	3426	1116	39	1	873	1	CHRNE	17	4804455	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1346454	4804455	76390755	549	86448											
TP53	7157	broad.mit.edu	37	chr17	7577534	7577534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgatggtgaggatgggCctccggttcatgccgcccat	15	10	1	3	rs28934571		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577534	A	A	7577534	3	1	82	1	0	0	0	0	1	0	0	0	16505	738	26	3	543	3	TP53	17	7577534	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2773079	7577534	73617676	550	86449											
TRAPPC1	58485	broad.mit.edu	37	chr17	7833933	7833933	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggttgcttcagccagcCcgggcggagaagaagggcag	18	9	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7833933	A	A	7833933	2	1	82	1	0	0	0	0	0	0	0	1	16580	610	22	2		2	TRAPPC1	17	7833933	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	256399	7833933	73361277	551	86450											
MYH8	4626	broad.mit.edu	37	chr17	10316174	10316174	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattctataaaaggccaaatGaggttttctaaccttagagc	7	7	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10316174	T	T	10316174	1	4	82	0	1	0	0	0	0	0	0	0	10135	1305	45	3		3	MYH8	17	10316174	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2482241	10316174	70879036	552	86451											
LGALS9B	284194	broad.mit.edu	37	chr17	20361461	20361461	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatagggctgggagtccCgtgggcgagaggtggggagg	22	7	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20361461	T	T	20361461	1	4	82	0	1	0	0	0	0	0	0	0	8821	667	23	4		4	LGALS9B	17	20361461	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	10045287	20361461	60833749	553	86452											
KSR1	8844	broad.mit.edu	37	chr17	25936223	25936223	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgatgtgtcctccaggGcatgggatatcttcatgcca	10	12	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25936223	A	A	25936223	3	1	82	1	0	0	0	0	1	0	0	0	8653	1217	42	4	1802	4	KSR1	17	25936223	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5574762	25936223	55258987	554	86453											
PROCA1	147011	broad.mit.edu	37	chr17	27031178	27031178	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcatctgccccacactcatGgtagagtggatggtggatca	11	10	4	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27031178	A	A	27031178	3	1	82	1	0	0	0	0	1	0	0	0	12652	1348	47	4	605	4	PROCA1	17	27031178	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1094955	27031178	54164032	555	86454											
EFCAB5	374786	broad.mit.edu	37	chr17	28408005	28408005	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagattctatcaggtaagTcatagaagtcttcaagagcg	9	7	6	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28408005	C	C	28408005	1	2	82	0	1	0	0	0	0	0	0	0	4978	1682	58	5		5	EFCAB5	17	28408005	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1376827	28408005	52787205	556	86455											
MYO1D	4642	broad.mit.edu	37	chr17	31094726	31094726	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagccaatgactttcatGgcatcagcaacaactctgaa	7	10	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31094726	A	A	31094726	2	1	82	1	0	0	0	0	0	0	0	1	10165	1335	47	4		4	MYO1D	17	31094726	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2686721	31094726	50100484	557	86456											
C17orf98	388381	broad.mit.edu	37	chr17	36991492	36991492	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagacggacgtgctctgacGgagggctggagtgttcctgc	17	9	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36991492	A	A	36991492	3	1	82	1	0	0	0	0	1	0	0	0	1911	1116	39	4	53	4	C17orf98	17	36991492	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5896766	36991492	44203718	558	86457											
ACBD4	79777	broad.mit.edu	37	chr17	43213883	43213883	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggttcttaccgcccctcCtatgaagagatgctgcgatt	9	13	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43213883	T	T	43213883	2	4	82	1	0	0	0	0	0	0	0	1	124	668	24	4		4	ACBD4	17	43213883	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6222391	43213883	37981327	559	86458											
CACNA1G	8913	broad.mit.edu	37	chr17	48646649	48646649	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accggcttgactttttcatcGtcatcgcagggtgaggacct	11	11	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48646649	A	A	48646649	3	1	82	1	0	0	0	0	1	0	0	0	2570	1145	40	4	488	4	CACNA1G	17	48646649	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5432766	48646649	32548561	560	86459											
EPX	8288	broad.mit.edu	37	chr17	56277029	56277029	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtcttcaccctggccttcCgctttggccacacaatgctc	7	16	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56277029	T	T	56277029	3	4	82	1	0	0	0	0	1	0	0	0	5242	652	23	4	1445	4	EPX	17	56277029	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7630380	56277029	24918181	561	86460											
CA4	762	broad.mit.edu	37	chr17	58234210	58234210	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggctgaaaatcccatgggGgaggacagcttccaggagga	16	8	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58234210	A	A	58234210	1	1	82	0	1	0	0	0	0	0	0	0	2544	1247	43	4		4	CA4	17	58234210	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1957181	58234210	22961000	562	86461											
UBE2O	63893	broad.mit.edu	37	chr17	74396058	74396058	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcacctgggcaggcctggCcctaggcatctcaggctggg	16	13	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74396058	T	T	74396058	1	4	82	0	1	0	0	0	0	0	0	0	16994	754	26	4		4	UBE2O	17	74396058	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	16161848	74396058	6799152	563	86462											
FN3KRP	79672	broad.mit.edu	37	chr17	80684448	80684448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggagtctggggacagGgaggccctccagctttggtc	17	9	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80684448	T	T	80684448	3	4	82	1	0	0	0	0	1	0	0	0	6022	1223	43	2	579	2	FN3KRP	17	80684448	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6288390	80684448	510762	564	86463											
DSG4	147409	broad.mit.edu	37	chr18	28991303	28991303	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcatggccgcaggggcCgcaggagcctcaggggccgc	18	15	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28991303	T	T	28991303	2	4	82	1	0	0	0	0	0	0	0	1	4819	639	23	4		4	DSG4	18	28991303	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08		28991303	49085945	565	86464											
C18orf34	374864	broad.mit.edu	37	chr18	30804957	30804957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacttaaacatttattgagCctcttattcagtgacaggca	6	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30804957	A	A	30804957	1	1	82	0	1	0	0	0	0	0	0	0	1920	754	26	3		3	C18orf34	18	30804957	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1813654	30804957	47272291	566	86465											
SETBP1	26040	broad.mit.edu	37	chr18	42643638	42643638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcagaggaagtcccgagGgagtgagagcgaggtccttc	17	8	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42643638	A	A	42643638	3	1	82	1	0	0	0	0	1	0	0	0	14242	1232	43	4	4977	4	SETBP1	18	42643638	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	11838681	42643638	35433610	567	86466											
KIAA1468	57614	broad.mit.edu	37	chr18	59855296	59855296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgtcacactccggcaGggtatttgggattgtacgga	13	10	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59855296	T	T	59855296	1	4	82	0	1	0	0	0	0	0	0	0	8306	1015	35	2		2	KIAA1468	18	59855296	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	17211658	59855296	18221952	568	86467											
ABCA7	10347	broad.mit.edu	37	chr19	1058968	1058968	+	Intron	DEL	G	-	-													ggtcaggtcgactgctgggtGgggggtgctcccactggccc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1058968	-	-	1058968	6	5	82	0	1	1	0	1	0	0	0	0	37	1363	47	0		0	ABCA7	19	1058968	Intron	DEL	G	TCGA-17-Z053-01A-01W-0747-08		1058968	58070015	569	86468											
VAV1	7409	broad.mit.edu	37	chr19	6843227	6843227	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggtttctgggttgggGttccaggctgggtatgggag	20	4	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6843227	A	A	6843227	1	1	82	0	1	0	0	0	0	0	0	0	17258	1276	44	4		4	VAV1	19	6843227	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5784259	6843227	52285756	570	86469											
FCER2	2208	broad.mit.edu	37	chr19	7762237	7762237	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcctcattgtctcccccAtctacccccacccatccctt	3	21	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7762237	G	G	7762237	1	3	82	0	1	0	0	0	0	0	0	0	5833	232	8	5		5	FCER2	19	7762237	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	919010	7762237	51366746	571	86470											
CLEC4M	10332	broad.mit.edu	37	chr19	7828197	7828197	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcagctgggcctcctGggtaaggctgggttggaact	17	9	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7828197	A	A	7828197	2	1	82	1	0	0	0	0	0	0	0	1	3550	1362	47	4		4	CLEC4M	19	7828197	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	65960	7828197	51300786	572	86471											
ANGPTL4	51129	broad.mit.edu	37	chr19	8429470	8429470	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaccgaggggtccaccgacCtcccgttagcccctgagagc	12	16	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8429470	G	G	8429470	3	3	82	1	0	0	0	0	1	0	0	0	616	681	24	4	267	4	ANGPTL4	19	8429470	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	601273	8429470	50699513	573	86472											
MUC16	94025	broad.mit.edu	37	chr19	9008103	9008103	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattgccaggcaggaagtgtGacctctagttagagattagc	12	7	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9008103	T	T	9008103	1	4	82	0	1	0	0	0	0	0	0	0	10067	1305	45	3		3	MUC16	19	9008103	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	578633	9008103	50120880	574	86473											
DNM2	1785	broad.mit.edu	37	chr19	10897233	10897233	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctgatctctgacctctctCctgcagcaactgaccaacca	5	16	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10897233	G	G	10897233	1	3	82	0	1	0	0	0	0	0	0	0	4712	870	30	4		4	DNM2	19	10897233	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1889130	10897233	48231750	575	86474											
CCDC151	115948	broad.mit.edu	37	chr19	11534596	11534596	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaccttgccaaagatcacctCcatctggtacatgctccagc	7	15	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11534596	G	G	11534596	3	3	82	1	0	0	0	0	1	0	0	0	2812	864	30	4	745	4	CCDC151	19	11534596	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	637363	11534596	47594387	576	86475											
ZNF69	7620	broad.mit.edu	37	chr19	12022692	12022693	+	Intron	DNP	GG	TT	TT													cttataaatgtaagatatgtGggaaaggcttttattctgcc							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	12022693	TT	TT	12022692	1	4	82	0	1	0	0	0	0	0	0	0	18222	1363	47	2		2	ZNF69	19	12022692	Intron	DNP	GG	TCGA-17-Z053-01A-01W-0747-08	488096	12022692	47106291	577	86476											
ZNF564	163050	broad.mit.edu	37	chr19	12639124	12639124	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgcaaattaccttaaaAttctcccctgatttttgtac	4	10	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12639124	T	T	12639124	3	4	82	1	0	0	0	0	1	0	0	0	18122	101	4	5	1484	5	ZNF564	19	12639124	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	616432	12639124	46489859	578	86477											
BEST2	54831	broad.mit.edu	37	chr19	12866162	12866162	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgtgagctcaccattcAggcctcctcatgacctgtat	8	14	3	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12866162	T	T	12866162	1	4	82	0	1	0	0	0	0	0	0	0	1410	203	7	5		5	BEST2	19	12866162	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	227038	12866162	46262821	579	86478											
CD97	976	broad.mit.edu	37	chr19	14501929	14501929	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctctgactttccatccatGaggtttggggtcaccagagc	10	12	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14501929	T	T	14501929	1	4	82	0	1	0	0	0	0	0	0	0	3079	1305	45	3		3	CD97	19	14501929	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1635767	14501929	44627054	580	86479											
EMR3	84658	broad.mit.edu	37	chr19	14785534	14785534	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggggataggttaagcctcAgtcattgttacagtcacaca	11	8	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14785534	T	T	14785534	1	4	82	0	1	0	0	0	0	0	0	0	5148	203	7	5		5	EMR3	19	14785534	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	283605	14785534	44343449	581	86480											
OR1I1	126370	broad.mit.edu	37	chr19	15197931	15197931	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttcctccagggactctcaGaaaagccagagcatcagacc	8	14	3	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15197931	A	A	15197931	3	1	82	1	0	0	0	0	1	0	0	0	11052	943	33	4	57	4	OR1I1	19	15197931	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	412397	15197931	43931052	582	86481											
CALR3	125972	broad.mit.edu	37	chr19	16591450	16591450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcgccccaggtggccttgCcaaaattatctgcgtactct	8	13	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16591450	A	A	16591450	3	1	82	1	0	0	0	0	1	0	0	0	2619	739	26	3	176	3	CALR3	19	16591450	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1393519	16591450	42537533	583	86482											
NXNL1	115861	broad.mit.edu	37	chr19	17571670	17571670	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgcggccagagaacagGgaggccatggtaacctgggt	17	8	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17571670	A	A	17571670	2	1	82	1	0	0	0	0	0	0	0	1	10883	1219	43	4		4	NXNL1	19	17571670	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	980220	17571670	41557313	584	86483											
GLT25D1	79709	broad.mit.edu	37	chr19	17690484	17690484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggacttagaggtgggGgtgggggcagggtggagctg	24	5	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17690484	T	T	17690484	1	4	82	0	1	0	0	0	0	0	0	0	6530	1247	43	2		2	GLT25D1	19	17690484	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	118814	17690484	41438499	585	86484											
FCHO1	23149	broad.mit.edu	37	chr19	17881715	17881715	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcagccctggtaagaaccAggcatctgtacctttaagac	8	12	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17881715	G	G	17881715	1	3	82	0	1	0	0	0	0	0	0	0	5844	203	7	5		5	FCHO1	19	17881715	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	191231	17881715	41247268	586	86485											
ZNF91	7644	broad.mit.edu	37	chr19	23544835	23544835	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagggtttctctccagtatGaattctcttatgtttagcaa	8	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23544835	C	C	23544835	3	2	82	1	0	0	0	0	1	0	0	0	18329	1290	45	4	2633	4	ZNF91	19	23544835	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5663120	23544835	35584148	587	86486											
ANKRD27	84079	broad.mit.edu	37	chr19	33122231	33122231	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccatgcctggccaaccctGatggattttatagaggcacc	9	13	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33122231	A	A	33122231	1	1	82	0	1	0	0	0	0	0	0	0	655	1305	45	4		4	ANKRD27	19	33122231	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	9577396	33122231	26006752	588	86487											
ZNF599	148103	broad.mit.edu	37	chr19	35260312	35260312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggctgtgggtcccctacaTgggagggtaatgaggtctta	16	7	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35260312	C	C	35260312	1	2	82	0	1	0	0	0	0	0	0	0	18156	1479	51	5		5	ZNF599	19	35260312	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2138081	35260312	23868671	589	86488											
SBSN	374897	broad.mit.edu	37	chr19	36017586	36017586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctggcttggttgaccCcattatgagcattctgcagc	10	12	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36017586	T	T	36017586	3	4	82	1	0	0	0	0	1	0	0	0	13976	623	22	4	190	4	SBSN	19	36017586	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	757274	36017586	23111397	590	86489											
U2AF1L4	199746	broad.mit.edu	37	chr19	36234710	36234710	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaggctggtcctgaggtacCtgcgcctgggtccccgccca	14	16	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36234710	G	G	36234710	3	3	82	1	0	0	0	0	1	0	0	0	16948	695	24	4	213	4	U2AF1L4	19	36234710	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	217124	36234710	22894273	591	86490											
RASGRP4	115727	broad.mit.edu	37	chr19	38903629	38903629	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaattgcccgagagtcGctcaaagtcctcctgagaga	12	10	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38903629	T	T	38903629	2	4	82	1	0	0	0	0	0	0	0	1	13185	1095	38	3		3	RASGRP4	19	38903629	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2668919	38903629	20225354	592	86491											
RYR1	6261	broad.mit.edu	37	chr19	39070793	39070793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggacctggctgtgggGcgtgggccagcagggaccag	22	9	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39070793	T	T	39070793	1	4	82	0	1	0	0	0	0	0	0	0	13879	1218	42	3		3	RYR1	19	39070793	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	167164	39070793	20058190	593	86492											
SHKBP1	92799	broad.mit.edu	37	chr19	41096894	41096894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcagcctccactcagcCtccagcaacacctccttgtc	4	20	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41096894	A	A	41096894	2	1	82	1	0	0	0	0	0	0	0	1	14397	668	24	2		2	SHKBP1	19	41096894	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2026101	41096894	18032089	594	86493											
TGFB1	7040	broad.mit.edu	37	chr19	41847856	41847856	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgctgggccctctccagCggggtggccatgagaagcag	16	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41847856	T	T	41847856	2	4	82	1	0	0	0	0	0	0	0	1	15939	755	27	4		4	TGFB1	19	41847856	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	750962	41847856	17281127	595	86494											
BCKDHA	593	broad.mit.edu	37	chr19	41903322	41903322	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaccagtgcgcacgcgccgGgctgggccatcctcctgggc	14	16	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41903322	T	T	41903322	1	4	82	0	1	0	0	0	0	0	0	0	1364	1247	43	2		2	BCKDHA	19	41903322	5'Flank	SNP	G	TCGA-17-Z053-01A-01W-0747-08	55466	41903322	17225661	596	86495											
XRCC1	7515	broad.mit.edu	37	chr19	44047545	44047545	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtgtatagcacatacttCaggcttgcggcaccacccca	9	13	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44047545	T	T	44047545	2	4	82	1	0	0	0	0	0	0	0	1	17579	837	29	4		4	XRCC1	19	44047545	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2144223	44047545	15081438	597	86496											
PLAUR	5329	broad.mit.edu	37	chr19	44153059	44153059	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttaggtccagaggagagTgcctccccacagtctggcag	14	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44153059	C	C	44153059	3	2	82	1	0	0	0	0	1	0	0	0	12118	1696	59	5	116	5	PLAUR	19	44153059	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	105514	44153059	14975924	598	86497											
CCDC8	83987	broad.mit.edu	37	chr19	46915351	46915351	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgggctggtgccctctggCgccgatgatacccctgcgct	13	17	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46915351	G	G	46915351	2	3	82	1	0	0	0	0	0	0	0	1	2881	755	27	4		4	CCDC8	19	46915351	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2762292	46915351	12213632	599	86498											
SYT3	84258	broad.mit.edu	37	chr19	51128456	51128456	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgctccacgggcttgcggGgattggccagcatctctgcc	14	13	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51128456	A	A	51128456	3	1	82	1	0	0	0	0	1	0	0	0	15594	1232	43	4	110	4	SYT3	19	51128456	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4213105	51128456	8000527	600	86499											
CLDND2	125875	broad.mit.edu	37	chr19	51871909	51871909	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgaggcccccagctgaggAgcccgcttcctccacactcc	9	21	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51871909	C	C	51871909	1	2	82	0	1	0	0	0	0	0	0	0	3526	319	11	5		5	CLDND2	19	51871909	5'UTR	SNP	A	TCGA-17-Z053-01A-01W-0747-08	743453	51871909	7257074	601	86500											
SIGLEC5	8778	broad.mit.edu	37	chr19	52130877	52130877	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagccctggctgctgttccCctccagcggcttctcctcaa	9	17	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52130877	T	T	52130877	3	4	82	1	0	0	0	0	1	0	0	0	14424	623	22	4	551	4	SIGLEC5	19	52130877	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	258968	52130877	6998106	602	86501											
HAS1	3036	broad.mit.edu	37	chr19	52222521	52222521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatgacctcgcgcttgcCgccccagcgctgcgccacgc	11	19	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52222521	A	A	52222521	3	1	82	1	0	0	0	0	1	0	0	0	7027	652	23	1	1112	1	HAS1	19	52222521	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	91644	52222521	6906462	603	86502											
ZNF578	147660	broad.mit.edu	37	chr19	53015478	53015478	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagtcacagatcacgccttAaaagacataggagaattcat	7	9	4	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53015478	G	G	53015478	1	3	82	0	1	0	0	0	0	0	0	0	18137	377	13	5		5	ZNF578	19	53015478	3'UTR	SNP	A	TCGA-17-Z053-01A-01W-0747-08	792957	53015478	6113505	604	86503											
LILRB3	11025	broad.mit.edu	37	chr19	54721423	54721423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcctcactgttcccggGgtgatccgattacatccctt	7	13	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54721423	T	T	54721423	1	4	82	0	1	0	0	0	0	0	0	0	8864	1247	43	2		2	LILRB3	19	54721423	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1705945	54721423	4407560	605	86504											
LILRB2	10288	broad.mit.edu	37	chr19	54779714	54779714	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtccaccgtgacgatgctGagagccgggggaaggaggac	19	9	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54779714	C	C	54779714	1	2	82	0	1	0	0	0	0	0	0	0	8863	1305	45	4		4	LILRB2	19	54779714	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	58291	54779714	4349269	606	86505											
KIR2DL3	3804	broad.mit.edu	37	chr19	55268359	55268359	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccttgctgtctgcctggcCcagctctgtggtgcctccag	12	16	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55268359	A	A	55268359	1	1	82	0	1	0	0	0	0	0	0	0	8388	638	22	2		2	KIR2DL3	19	55268359	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	488645	55268359	3860624	607	86506											
NLRP7	199713	broad.mit.edu	37	chr19	55449547	55449547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagagagagcagaaatctGtccagaggcgaagagagcga	15	6	1	6			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55449547	T	T	55449547	3	4	82	1	0	0	0	0	1	0	0	0	10577	1377	48	3	1147	3	NLRP7	19	55449547	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	181188	55449547	3679436	608	86507											
NLRP2	55655	broad.mit.edu	37	chr19	55502086	55502086	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgggtgtatatgcacacGccccccacctccgggtttga	12	14	0	1	rs149177056	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55502086	A	A	55502086	1	1	82	0	1	0	0	0	0	0	0	0	10572	1102	38	4		4	NLRP2	19	55502086	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	52539	55502086	3626897	609	86508											
PTPRH	5794	broad.mit.edu	37	chr19	55718315	55718315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtcaggttcctccctgGgttgggggctgagaattggg	16	9	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55718315	T	T	55718315	3	4	82	1	0	0	0	0	1	0	0	0	12911	1232	43	2	3325	2	PTPRH	19	55718315	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	216229	55718315	3410668	610	86509											
PEG3	5178	broad.mit.edu	37	chr19	57334976	57334976	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accactgaaagaatggactgAgtgaggtggtgaggactctc	14	7	1	5			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57334976	G	G	57334976	3	3	82	1	0	0	0	0	1	0	0	0	11814	304	11	5	4330	5	PEG3	19	57334976	Missense_Mutation	SNP	A	TCGA-17-Z053-01A-01W-0747-08	1616661	57334976	1794007	611	86510											
PEG3	5178	broad.mit.edu	37	chr19	57335144	57335144	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctccctgtcacagacacaCatggttggaatgacctgatc	8	12	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57335144	T	T	57335144	1	4	82	0	1	0	0	0	0	0	0	0	11814	493	17	4		4	PEG3	19	57335144	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	168	57335144	1793839	612	86511											
ZNF772	400720	broad.mit.edu	37	chr19	57985130	57985130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctatgattaaaaactttccCacatatgccacactcataag	4	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57985130	A	A	57985130	3	1	82	1	0	0	0	0	1	0	0	0	18274	594	21	2	491	2	ZNF772	19	57985130	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	649986	57985130	1143853	613	86512											
ZNF329	79673	broad.mit.edu	37	chr19	58639392	58639392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgccaggtgagagttctgCttgaaggacttcccacattc	10	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58639392	A	A	58639392	3	1	82	1	0	0	0	0	1	0	0	0	17973	796	28	3	150	3	ZNF329	19	58639392	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	654262	58639392	489591	614	86513											
ZNF343	79175	broad.mit.edu	37	chr20	2464776	2464777	+	Frame_Shift_Ins	INS	-	C	C													gggttgatctatctttaaagINScttcgcccacaatcactgca							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2464777	C	C	2464776	7	5	82	1	0	1	1	0	0	0	0	0	17984	962	34	0	972	0	ZNF343	20	2464776	Frame_Shift_Ins	INS	-	TCGA-17-Z053-01A-01W-0747-08		2464776	60560744	615	86514											
NOP56	10528	broad.mit.edu	37	chr20	2638491	2638491	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgggcaatgttaacgacaCgcgttcccctgccttggcta	10	13	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2638491	T	T	2638491	1	4	82	0	1	0	0	0	0	0	0	0	10634	551	19	4		4	NOP56	20	2638491	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	173715	2638491	60387029	616	86515											
SIGLEC1	6614	broad.mit.edu	37	chr20	3669805	3669805	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgttgaatggatacctgCgtggtctctttctgaaaagc	12	7	2	2	rs143796184	byFrequency	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3669805	A	A	3669805	2	1	82	1	0	0	0	0	0	0	0	1	14418	755	27	3		3	SIGLEC1	20	3669805	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1031314	3669805	59355715	617	86516											
SLC23A2	9962	broad.mit.edu	37	chr20	4855301	4855301	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgggagaggaaatttaacaTttctggcgtattgagaaaac	11	5	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4855301	G	G	4855301	3	3	82	1	0	0	0	0	1	0	0	0	14577	1493	52	5	1118	5	SLC23A2	20	4855301	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1185496	4855301	58170219	618	86517											
C20orf12	55184	broad.mit.edu	37	chr20	18401980	18401980	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagctccacatatgtgacgCttacagatttggacttttga	8	9	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18401980	T	T	18401980	1	4	82	0	1	0	0	0	0	0	0	0	2107	812	28	4		4	C20orf12	20	18401980	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	13546679	18401980	44623540	619	86518											
CRNKL1	51340	broad.mit.edu	37	chr20	20021469	20021469	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatccaaattaaattgaaTtaaaattaatttaaattaac	1	5	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20021469	G	G	20021469	1	3	82	0	1	0	0	0	0	0	0	0	3923	1508	52	5		5	CRNKL1	20	20021469	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1619489	20021469	43004051	620	86519											
DEFB118	117285	broad.mit.edu	37	chr20	29957857	29957857	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggccaataactcttgttcaGactcccactgcacacagcgt	7	14	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29957857	T	T	29957857	1	4	82	0	1	0	0	0	0	0	0	0	4445	957	33	3		3	DEFB118	20	29957857	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	9936388	29957857	33067663	621	86520											
C20orf186	149954	broad.mit.edu	37	chr20	31670915	31670915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggggcctgcttggtggtgGgggtggagggggtggcagtg	27	4	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31670915	T	T	31670915	1	4	82	0	1	0	0	0	0	0	0	0	2120	1247	43	2		2	C20orf186	20	31670915	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1713058	31670915	31354605	622	86521											
SLC13A3	64849	broad.mit.edu	37	chr20	45220931	45220931	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catacataaaagaaagaaatGagaatacaacatgaaataac	5	5	0	4			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45220931	A	A	45220931	1	1	82	0	1	0	0	0	0	0	0	0	14506	1305	45	4		4	SLC13A3	20	45220931	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	13550016	45220931	17804589	623	86522											
FAM65C	140876	broad.mit.edu	37	chr20	49221413	49221413	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatgcaggtagatggtcttCatcttacaatacaatagcat	7	7	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49221413	A	A	49221413	1	1	82	0	1	0	0	0	0	0	0	0	5652	841	29	3		3	FAM65C	20	49221413	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4000482	49221413	13804107	624	86523											
SALL4	57167	broad.mit.edu	37	chr20	50408833	50408834	+	Frame_Shift_Ins	INS	-	G	G													cctcccgacgaagccgctttINSactgtggcttcatcctcact							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50408834	G	G	50408833	7	5	82	1	0	1	1	0	0	0	0	0	13924	1741	61	0	2984	0	SALL4	20	50408833	Frame_Shift_Ins	INS	-	TCGA-17-Z053-01A-01W-0747-08	1187420	50408833	12616687	625	86524											
GNAS	2778	broad.mit.edu	37	chr20	57415311	57415311	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccttgccacctccaacgcCcgtgcccagcagcgcgcggc	11	21	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57415311	T	T	57415311	2	4	82	1	0	0	0	0	0	0	0	1	6574	610	22	4		4	GNAS	20	57415311	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7006478	57415311	5610209	626	86525											
ZNF831	128611	broad.mit.edu	37	chr20	57769519	57769519	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgcccccaggctggccaGagctggccttgtcttcccac	12	16	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57769519	C	C	57769519	3	2	82	1	0	0	0	0	1	0	0	0	18314	943	33	4	3447	4	ZNF831	20	57769519	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	354208	57769519	5256001	627	86526											
GTPBP5	26164	broad.mit.edu	37	chr20	60774238	60774238	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaacgccagacccgccGtggcttcctacccgttcacc	7	18	2	1	rs146207812	byFrequency;by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60774238	C	C	60774238	3	2	82	1	0	0	0	0	1	0	0	0	6948	1145	40	4	769	4	GTPBP5	20	60774238	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	3004719	60774238	2251282	628	86527											
GMEB2	26205	broad.mit.edu	37	chr20	62223356	62223356	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccgcccaggggacgggacGggggtggtctcagcatacct	16	12	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62223356	A	A	62223356	1	1	82	0	1	0	0	0	0	0	0	0	6552	1131	39	4		4	GMEB2	20	62223356	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1449118	62223356	802164	629	86528											
TPTE	7179	broad.mit.edu	37	chr21	10907072	10907072	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaattattacattttatAttggggctcactgaaaagcc	6	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10907072	G	G	10907072	1	3	82	0	1	0	0	0	0	0	0	0	16554	464	16	5		5	TPTE	21	10907072	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08		10907072	37222823	630	86529											
BAGE2	85319	broad.mit.edu	37	chr21	11047436	11047436	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatatccgatttgtctgttCtccatataaaacatacagag	6	8	2	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11047436	T	T	11047436	1	4	82	0	1	0	0	0	0	0	0	0	1297	928	32	4		4	BAGE2	21	11047436	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	140364	11047436	37082459	631	86530											
NCAM2	4685	broad.mit.edu	37	chr21	22790887	22790887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatatattcttgctttggCtggtaagtatagcacaataa	8	5	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22790887	A	A	22790887	3	1	82	1	0	0	0	0	1	0	0	0	10298	797	28	3	1520	3	NCAM2	21	22790887	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	11743451	22790887	25339008	632	86531											
NCAM2	4685	broad.mit.edu	37	chr21	22881186	22881186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaagacacgctgtttaatGgtcttgggcttggagcagta	12	6	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22881186	T	T	22881186	3	4	82	1	0	0	0	0	1	0	0	0	10298	1348	47	2	2154	2	NCAM2	21	22881186	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	90299	22881186	25248709	633	86532											
MRPL39	54148	broad.mit.edu	37	chr21	26961267	26961267	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggacagagtctttataTagcttttagaacaaaataaa	6	4	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26961267	C	C	26961267	1	2	82	0	1	0	0	0	0	0	0	0	9896	1421	49	5		5	MRPL39	21	26961267	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	4080081	26961267	21168628	634	86533											
GRIK1	2897	broad.mit.edu	37	chr21	31062244	31062244	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaatagactgcacagcactGacggaggagctatgggaagg	14	8	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31062244	C	C	31062244	2	2	82	1	0	0	0	0	0	0	0	1	6839	1277	45	4		4	GRIK1	21	31062244	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08	4100977	31062244	17067651	635	86534											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127642	32127642	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagagccagagccatagcCacagccacagccggagccat	11	16	0	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32127642	G	G	32127642	3	3	82	1	0	0	0	0	1	0	0	0	8609	594	21	4	186	4	KRTAP21-1	21	32127642	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	1065398	32127642	16002253	636	86535											
SON	6651	broad.mit.edu	37	chr21	34948850	34948850	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaggacctcatggctaatGccacttgcttcaggagtgcc	10	12	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34948850	A	A	34948850	1	1	82	0	1	0	0	0	0	0	0	0	15040	1334	46	4		4	SON	21	34948850	3'UTR	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2821208	34948850	13181045	637	86536											
UMODL1	89766	broad.mit.edu	37	chr21	43547016	43547016	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctcgttcatttgcacGttcctctggagctgtgtttt	9	10	4	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43547016	A	A	43547016	1	1	82	0	1	0	0	0	0	0	0	0	17106	1160	40	4		4	UMODL1	21	43547016	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	8598166	43547016	4582879	638	86537											
KRTAP10-10	353333	broad.mit.edu	37	chr21	46057642	46057642	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtctgctgtgtgcccgTctgctgcgtgcccgtctgta	13	14	3	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46057642	C	C	46057642	3	2	82	1	0	0	0	0	1	0	0	0	8577	1667	58	5	310	5	KRTAP10-10	21	46057642	Missense_Mutation	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2510626	46057642	2072253	639	86538											
ADARB1	104	broad.mit.edu	37	chr21	46602546	46602546	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagtgtttctacaggaacAaaatgtattaatggtgaata	8	3	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46602546	G	G	46602546	2	3	82	1	0	0	0	0	0	0	0	1	282	117	5	5		5	ADARB1	21	46602546	Silent	SNP	A	TCGA-17-Z053-01A-01W-0747-08	544904	46602546	1527349	640	86539											
SLC25A18	83733	broad.mit.edu	37	chr22	18066168	18066168	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcggctgaaggagcctgacGcctgttcccataggatgcag	14	11	0	2	rs149112328	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18066168	C	C	18066168	1	2	82	0	1	0	0	0	0	0	0	0	14594	1102	38	4		4	SLC25A18	22	18066168	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08		18066168	33238398	641	86540											
GGT1	2678	broad.mit.edu	37	chr22	25019732	25019732	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctcagcaacatgcacctgGctctgatcaaccagggtaca	10	13	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25019732	C	C	25019732	1	2	82	0	1	0	0	0	0	0	0	0	6425	1218	42	4		4	GGT1	22	25019732	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	6953564	25019732	26284834	642	86541											
MYO18B	84700	broad.mit.edu	37	chr22	26193973	26193973	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccagctccagggtgccatGgagatgctcggcatctcaga	13	13	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26193973	A	A	26193973	3	1	82	1	0	0	0	0	1	0	0	0	10160	1348	47	4	2472	4	MYO18B	22	26193973	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	1174241	26193973	25110593	643	86542											
AP1B1	162	broad.mit.edu	37	chr22	29750760	29750760	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgccgtagtagtccaagtCcttagacaacatctccatga	8	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29750760	T	T	29750760	3	4	82	1	0	0	0	0	1	0	0	0	733	855	30	4	2100	4	AP1B1	22	29750760	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3556787	29750760	21553806	644	86543											
MEI1	150365	broad.mit.edu	37	chr22	42172317	42172317	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttgacctgaaagccagtCgagaatgggcatctctaccc	9	12	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42172317	A	A	42172317	1	1	82	0	1	0	0	0	0	0	0	0	9558	899	31	3		3	MEI1	22	42172317	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	12421557	42172317	9132249	645	86544											
MAP3K15	389840	broad.mit.edu	37	chrX	19389463	19389463	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccagatggagcacttacGgcatcctgaaatccgaacag	12	11	0	2	rs140041575	byFrequency	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19389463	T	T	19389463	2	4	82	1	0	0	0	0	0	0	0	1	9341	1130	39	1		1	MAP3K15	23	19389463	Silent	SNP	G	TCGA-17-Z053-01A-01W-0747-08		19389463	135881097	646	86545											
MAGEB4	4115	broad.mit.edu	37	chrX	30260839	30260839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagtgcctggacccttcCaaggaatgggcttctgatgc	13	11	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30260839	A	A	30260839	3	1	82	1	0	0	0	0	1	0	0	0	9270	594	21	2	589	2	MAGEB4	23	30260839	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	10871376	30260839	125009721	647	86546											
DMD	1756	broad.mit.edu	37	chrX	32583858	32583858	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttttggactaaattatcCcaacaccgggcaaagttatc	7	9	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32583858	G	G	32583858	3	3	82	1	0	0	0	0	1	0	0	0	4620	624	22	4	9603	4	DMD	23	32583858	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2323019	32583858	122686702	648	86547											
CXorf22	170063	broad.mit.edu	37	chrX	35973920	35973920	+	Intron	SNP	C	T	T													tcactgctgtatccgcaaggCgtgacacagagaagacactc					rs111571802		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35973920	T	T	35973920	1	4	82	0	1	0	0	0	0	0	0	0	4135	783	27	4		4	CXorf22	23	35973920	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3390062	35973920	119296640	649	86548	391	2									
CXorf22	170063	broad.mit.edu	37	chrX	35973922	35973922	+	Intron	SNP	T	A	A													actgctgtatccgcaaggcgTgacacagagaagacactcaa							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35973922	A	A	35973922	1	1	82	0	1	0	0	0	0	0	0	0	4135	1711	59	5		5	CXorf22	23	35973922	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	2	35973922	119296638	650	86549	391	2									
SYTL5	94122	broad.mit.edu	37	chrX	37985860	37985860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgagccatgggaagaaCgtggattggatggactctca	16	6	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37985860	A	A	37985860	3	1	82	1	0	0	0	0	1	0	0	0	15605	535	19	3	2202	3	SYTL5	23	37985860	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	2011938	37985860	117284700	651	86550											
SSX7	280658	broad.mit.edu	37	chrX	52677126	52677126	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccaagtcacgtggtttgTatatgggtgacaactccagt	11	10	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52677126	C	C	52677126	1	2	82	0	1	0	0	0	0	0	0	0	15327	1653	57	5		5	SSX7	23	52677126	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	14691266	52677126	102593434	652	86551											
ZC4H2	55906	broad.mit.edu	37	chrX	64141711	64141711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtaccacattgatgtcagCgtggatcagtcggagttcct	11	10	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64141711	A	A	64141711	3	1	82	1	0	0	0	0	1	0	0	0	17704	768	27	3	498	3	ZC4H2	23	64141711	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	11464585	64141711	91128849	653	86552											
PHKA1	5255	broad.mit.edu	37	chrX	71838619	71838619	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtaagcttgaggtctccttCaactgtaaaaccagtgcttt	8	9	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71838619	T	T	71838619	2	4	82	1	0	0	0	0	0	0	0	1	11938	825	29	4		4	PHKA1	23	71838619	Silent	SNP	C	TCGA-17-Z053-01A-01W-0747-08	7696908	71838619	83431941	654	86553											
P2RY10	27334	broad.mit.edu	37	chrX	78216046	78216046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgacaaatacactgaaaCattcaagatgggtagcaaca	7	9	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78216046	A	A	78216046	3	1	82	1	0	0	0	0	1	0	0	0	11441	478	17	3	31	3	P2RY10	23	78216046	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	6377427	78216046	77054514	655	86554											
ITM2A	9452	broad.mit.edu	37	chrX	78618510	78618510	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaggcacatcaatgattgCaatgttgtcatcctcacgaa	8	10	3	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78618510	T	T	78618510	3	4	82	1	0	0	0	0	1	0	0	0	7982	710	25	4	437	4	ITM2A	23	78618510	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	402464	78618510	76652050	656	86555											
POU3F4	5456	broad.mit.edu	37	chrX	82763625	82763625	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcgatcatccatcaccgctCgccacacgtagcccaccact	6	19	2	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763625	A	A	82763625	4	1	82	1	0	0	0	0	0	1	0	0	12373	893	31	3	295	3	POU3F4	23	82763625	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	4145115	82763625	72506935	657	86556											
DACH2	117154	broad.mit.edu	37	chrX	86071078	86071078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatagaaaacaatgggactCctcatgatagtgctgctatg	9	7	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86071078	A	A	86071078	3	1	82	1	0	0	0	0	1	0	0	0	4254	855	30	3	1768	3	DACH2	23	86071078	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	3307453	86071078	69199482	658	86557											
BTK	695	broad.mit.edu	37	chrX	100629331	100629331	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaacaaattttccatgtttAgtgagatgttctgaatatga	7	4	1	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100629331	T	T	100629331	1	4	82	0	1	0	0	0	0	0	0	0	1567	435	15	5		5	BTK	23	100629331	Intron	SNP	A	TCGA-17-Z053-01A-01W-0747-08	14558253	100629331	54641229	659	86558											
FAM199X	139231	broad.mit.edu	37	chrX	103411551	103411551	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactcctgggacctcctcgcGgggtgggcacctgcccgagc	14	17	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103411551	C	C	103411551	3	2	82	1	0	0	0	0	1	0	0	0	5577	1116	39	4	87	4	FAM199X	23	103411551	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	2782220	103411551	51859009	660	86559											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104440035	104440035	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctatctcataggattacTgggaagattgaatgaagtaa	10	4	2	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104440035	C	C	104440035	1	2	82	0	1	0	0	0	0	0	0	0	7732	1595	55	5		5	IL1RAPL2	23	104440035	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1028484	104440035	50830525	661	86560											
PAK3	5063	broad.mit.edu	37	chrX	110435485	110435485	+	Intron	DEL	A	-	-													cttcgatggcaacttcgcctAaaaaaaaaatgggtagcact							TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110435485	-	-	110435485	6	5	82	0	1	1	0	1	0	0	0	0	11496	377	13	0		0	PAK3	23	110435485	Intron	DEL	A	TCGA-17-Z053-01A-01W-0747-08	5995450	110435485	44835075	662	86561											
GRIA3	2892	broad.mit.edu	37	chrX	122528862	122528862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtcatgcatgggggagCcaacattacaggtttccaga	12	8	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122528862	A	A	122528862	3	1	82	1	0	0	0	0	1	0	0	0	6835	739	26	3	816	3	GRIA3	23	122528862	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	12093377	122528862	32741698	663	86562											
STAG2	10735	broad.mit.edu	37	chrX	123229240	123229240	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaccatcaaagaacagaCgagagagaacagaactgaag	10	9	1	6			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123229240	T	T	123229240	4	4	82	1	0	0	0	0	0	1	0	0	15361	528	19	4	3850	4	STAG2	23	123229240	Nonsense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	700378	123229240	32041320	664	86563											
ODZ1	10178	broad.mit.edu	37	chrX	123514910	123514910	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggcattattgagaatggCagcaagccgcctgctatctt	11	9	1	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123514910	T	T	123514910	3	4	82	1	0	0	0	0	1	0	0	0	10929	710	25	4	527	4	ODZ1	23	123514910	Missense_Mutation	SNP	C	TCGA-17-Z053-01A-01W-0747-08	285670	123514910	31755650	665	86564											
ODZ1	10178	broad.mit.edu	37	chrX	123695446	123695446	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagattcctaattttcacccTtggccaggttgattaccact	7	11	1	2			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123695446	A	A	123695446	1	1	82	0	1	0	0	0	0	0	0	0	10929	1624	56	5		5	ODZ1	23	123695446	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	180536	123695446	31575114	666	86565											
UTP14A	10813	broad.mit.edu	37	chrX	129055079	129055079	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatactcaccaagtcaaaTtgagaggaggcagctttatg	10	7	2	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129055079	C	C	129055079	1	2	82	0	1	0	0	0	0	0	0	0	17222	1508	52	5		5	UTP14A	23	129055079	Intron	SNP	T	TCGA-17-Z053-01A-01W-0747-08	5359633	129055079	26215481	667	86566											
SAGE1	55511	broad.mit.edu	37	chrX	134990674	134990674	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtccatgaagcaaggatgGaaaatggccaacgaaaacag	11	7	0	1			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134990674	T	T	134990674	4	4	82	1	0	0	0	0	0	1	0	0	13920	1175	41	3	1381	3	SAGE1	23	134990674	Nonsense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5935595	134990674	20279886	668	86567											
MAP7D3	79649	broad.mit.edu	37	chrX	135314286	135314286	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggaggtattttcattgtcGacatgggaaacataacagcc	11	7	1	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135314286	A	A	135314286	3	1	82	1	0	0	0	0	1	0	0	0	9361	1059	37	4	1844	4	MAP7D3	23	135314286	Missense_Mutation	SNP	G	TCGA-17-Z053-01A-01W-0747-08	323612	135314286	19956274	669	86568											
MAGEC3	139081	broad.mit.edu	37	chrX	140982901	140982901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagggtgggagggggtaGggaggtgggcacaaaggggt	26	2	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140982901	T	T	140982901	1	4	82	0	1	0	0	0	0	0	0	0	9274	1015	35	2		2	MAGEC3	23	140982901	Intron	SNP	G	TCGA-17-Z053-01A-01W-0747-08	5668615	140982901	14287659	670	86569											
UBE2NL	389898	broad.mit.edu	37	chrX	142967138	142967138	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacatgattaaatgatatTacattttaagtagaaataaa	4	2	0	3			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142967138	A	A	142967138	1	1	82	0	1	0	0	0	0	0	0	0	16993	1769	61	5		5	UBE2NL	23	142967138	5'Flank	SNP	T	TCGA-17-Z053-01A-01W-0747-08	1984237	142967138	12303422	671	86570											
PNCK	139728	broad.mit.edu	37	chrX	152938004	152938004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctatgccccgtcccagggCcccgcgaggtgcgcacctac	11	19	0	0			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152938004	A	A	152938004	1	1	82	0	1	0	0	0	0	0	0	0	12240	754	26	3		3	PNCK	23	152938004	Intron	SNP	C	TCGA-17-Z053-01A-01W-0747-08	9970866	152938004	2332556	672	86571											
CD2	914	broad.mit.edu	37	chr1	117303329	117303329	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcatgctgctccaggtcaCaggtgctcatgctgggaggc	15	11	2	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117303329	G	G	117303329	1	3	83	0	1	0	0	0	0	0	0	0	3009	493	17	4		4	CD2	1	117303329	Intron	SNP	C	TCGA-17-Z054-01A-01W-0747-08		117303329	131947292	1	86572											
NBPF9	400818	broad.mit.edu	37	chr1	144193568	144193568	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctctctccctccctctccCtgtctttctctttcattctt	1	19	7	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144193568	G	G	144193568	1	3	83	0	1	0	0	0	0	0	0	0	10294	696	24	4		4	NBPF9	1	144193568	Intron	SNP	C	TCGA-17-Z054-01A-01W-0747-08	26890239	144193568	105057053	2	86573											
LOC200030	200030	broad.mit.edu	37	chr1	148011290	148011290	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagagagagacagagacagaGagagagaaagtgacctagtg	16	4	0	7			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148011290	C	C	148011290	1	2	83	0	1	0	0	0	0	0	0	0	8950	957	33	4		4	LOC200030	1	148011290	Intron	SNP	G	TCGA-17-Z054-01A-01W-0747-08	3817722	148011290	101239331	3	86574											
TMCO1	54499	broad.mit.edu	37	chr1	165788784	165788784	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagggcactataaaggtcaGcaaattggtaaagtagtcca	11	7	1	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165788784	A	A	165788784	1	1	83	0	1	0	0	0	0	0	0	0	16118	986	34	4		4	TMCO1	1	165788784	Intron	SNP	G	TCGA-17-Z054-01A-01W-0747-08	17777494	165788784	83461837	4	86575											
CR1	1378	broad.mit.edu	37	chr1	207762112	207762112	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacagttaattattcttgtAatgaagggtgagttgagaat	10	3	1	3			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207762112	G	G	207762112	3	3	83	1	0	0	0	0	1	0	0	0	3872	362	13	5	5941	5	CR1	1	207762112	Missense_Mutation	SNP	A	TCGA-17-Z054-01A-01W-0747-08	41973328	207762112	41488509	5	86576											
MAGI1	9223	broad.mit.edu	37	chr3	65922647	65922647	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtggtggtggtggtgAtggtggtggtggtggtgatg	24	0	0	3			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65922647	G	G	65922647	1	3	83	0	1	0	0	0	0	0	0	0	9282	348	12	5		5	MAGI1	3	65922647	Intron	SNP	A	TCGA-17-Z054-01A-01W-0747-08		65922647	132099783	6	86577											
ROBO1	6091	broad.mit.edu	37	chr3	79136645	79136645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcagtatccttcttttcCagcttctttctcttccttcc	2	15	4	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79136645	A	A	79136645	1	1	83	0	1	0	0	0	0	0	0	0	13624	609	21	2		2	ROBO1	3	79136645	Intron	SNP	C	TCGA-17-Z054-01A-01W-0747-08	13213998	79136645	118885785	7	86578											
HS3ST1	9957	broad.mit.edu	37	chr4	11401104	11401104	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccatcgcgcaccaggaactCctcgatggacgggtagggct	14	13	0	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11401104	T	T	11401104	3	4	83	1	0	0	0	0	1	0	0	0	7430	864	30	4	401	4	HS3ST1	4	11401104	Missense_Mutation	SNP	C	TCGA-17-Z054-01A-01W-0747-08		11401104	179753172	8	86579											
SORBS2	8470	broad.mit.edu	37	chr4	186539747	186539747	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatcttacttacttagatgtCtgagccttaaaatcataaac	4	8	3	2			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186539747	T	T	186539747	2	4	83	1	0	0	0	0	0	0	0	1	15042	912	32	4		4	SORBS2	4	186539747	Silent	SNP	C	TCGA-17-Z054-01A-01W-0747-08	175138643	186539747	4614529	9	86580											
HEATR7B2	133558	broad.mit.edu	37	chr5	41070964	41070964	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaagtgtcatgtcttggctGtttcagggtctctaaaagat	10	7	4	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41070964	A	A	41070964	1	1	83	0	1	0	0	0	0	0	0	0	7102	1392	48	4		4	HEATR7B2	5	41070964	5'UTR	SNP	G	TCGA-17-Z054-01A-01W-0747-08		41070964	139844296	10	86581											
HOMER1	9456	broad.mit.edu	37	chr5	78671727	78671728	+	3'UTR	INS	-	T	T													cctggaggagtgatattcaaINStttttttttttttttttttg					rs71763510		TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78671728	T	T	78671727	6	5	83	0	1	1	1	0	0	0	0	0	7345	116	4	0		0	HOMER1	5	78671727	3'UTR	INS	-	TCGA-17-Z054-01A-01W-0747-08	37600763	78671727	102243533	11	86582											
TTC37	9652	broad.mit.edu	37	chr5	94838675	94838675	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatatgggctttgtcttgctCcgattcaacaatagacaagg	10	8	2	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94838675	G	G	94838675	3	3	83	1	0	0	0	0	1	0	0	0	16831	864	30	4	1492	4	TTC37	5	94838675	Missense_Mutation	SNP	C	TCGA-17-Z054-01A-01W-0747-08	16166948	94838675	86076585	12	86583											
HSD17B4	3295	broad.mit.edu	37	chr5	118862746	118862746	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcttttgtgctctctAgtttcctttccaattttttc	3	9	2	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118862746	T	T	118862746	1	4	83	0	1	0	0	0	0	0	0	0	7453	435	15	5		5	HSD17B4	5	118862746	Intron	SNP	A	TCGA-17-Z054-01A-01W-0747-08	24024071	118862746	62052514	13	86584											
TAF8	129685	broad.mit.edu	37	chr6	42036159	42036159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactctaagccagctgcgaGgtctctgtgacagtggactc	13	11	2	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42036159	A	A	42036159	1	1	83	0	1	0	0	0	0	0	0	0	15653	1015	35	4		4	TAF8	6	42036159	Intron	SNP	G	TCGA-17-Z054-01A-01W-0747-08		42036159	129078908	14	86585											
BEND6	221336	broad.mit.edu	37	chr6	56846445	56846445	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtttatctgagtggctaGtaccattatgaaacatacag	9	7	1	2			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56846445	A	A	56846445	1	1	83	0	1	0	0	0	0	0	0	0	1407	1044	36	4		4	BEND6	6	56846445	Intron	SNP	G	TCGA-17-Z054-01A-01W-0747-08	14810286	56846445	114268622	15	86586											
TTK	7272	broad.mit.edu	37	chr6	80722945	80722945	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaaaaatacattgaaaAttttttttttcaaatttaat	3	2	1	2			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80722945	T	T	80722945	1	4	83	0	1	0	0	0	0	0	0	0	16846	116	4	5		5	TTK	6	80722945	Intron	SNP	A	TCGA-17-Z054-01A-01W-0747-08	23876500	80722945	90392122	16	86587											
SVEP1	79987	broad.mit.edu	37	chr9	113241795	113241795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaataattttaaatattagGtacatgtctggatcacaaag	7	4	2	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113241795	A	A	113241795	1	1	83	0	1	0	0	0	0	0	0	0	15538	1276	44	4		4	SVEP1	9	113241795	Intron	SNP	G	TCGA-17-Z054-01A-01W-0747-08		113241795	27971636	17	86588											
NRP1	8829	broad.mit.edu	37	chr10	33619567	33619567	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacattgtacacaccgactTcccccccgtagacaggcgtg	8	16	0	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33619567	C	C	33619567	1	2	83	0	1	0	0	0	0	0	0	0	10755	1798	62	5		5	NRP1	10	33619567	Intron	SNP	T	TCGA-17-Z054-01A-01W-0747-08		33619567	101915180	18	86589											
COL17A1	1308	broad.mit.edu	37	chr10	105793612	105793612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcttgattctgtcttcaCagcctgggggttccacaaac	9	13	3	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105793612	T	T	105793612	1	4	83	0	1	0	0	0	0	0	0	0	3706	493	17	4		4	COL17A1	10	105793612	Intron	SNP	C	TCGA-17-Z054-01A-01W-0747-08	72174045	105793612	29741135	19	86590											
DMBT1	1755	broad.mit.edu	37	chr10	124376871	124376871	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctcaaggtgggcccctctCttttcatgtccctgtgggtt	12	12	3	0	rs112618039		TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124376871	T	T	124376871	1	4	83	0	1	0	0	0	0	0	0	0	4617	928	32	4		4	DMBT1	10	124376871	Intron	SNP	C	TCGA-17-Z054-01A-01W-0747-08	18583259	124376871	11157876	20	86591											
RAG1	5896	broad.mit.edu	37	chr11	36595447	36595447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaggtttacttcccgaGgaacgtgaccatggagtggc	14	8	0	2			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36595447	A	A	36595447	3	1	83	1	0	0	0	0	1	0	0	0	13111	1000	35	4	595	4	RAG1	11	36595447	Missense_Mutation	SNP	G	TCGA-17-Z054-01A-01W-0747-08		36595447	98411069	21	86592											
NINJ2	4815	broad.mit.edu	37	chr12	675233	675233	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcaccgccttcagccGcatggcgttggacatgaaca	10	15	1	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	675233	A	A	675233	3	1	83	1	0	0	0	0	1	0	0	0	10514	1086	38	4	291	4	NINJ2	12	675233	Missense_Mutation	SNP	G	TCGA-17-Z054-01A-01W-0747-08		675233	133176662	22	86593											
DDX47	51202	broad.mit.edu	37	chr12	12980129	12980129	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataatagtttgggaatggaCaggcatttgcgttaccaggc	12	6	0	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12980129	T	T	12980129	1	4	83	0	1	0	0	0	0	0	0	0	4398	493	17	4		4	DDX47	12	12980129	Intron	SNP	C	TCGA-17-Z054-01A-01W-0747-08	12304896	12980129	120871766	23	86594											
NCOR2	9612	broad.mit.edu	37	chr12	124848227	124848228	+	Frame_Shift_Ins	INS	-	G	G													tgggggtgggcactcacgatINSgggggggatggcagccgctc					rs12321697		TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124848228	G	G	124848227	7	5	83	1	0	1	1	0	0	0	0	0	10331	1464	51	0	4750	0	NCOR2	12	124848227	Frame_Shift_Ins	INS	-	TCGA-17-Z054-01A-01W-0747-08	111868098	124848227	9003668	24	86595											
TPTE2	93492	broad.mit.edu	37	chr13	20000709	20000710	+	Intron	INS	-	TG	TG													aacctagataacgataacaaINSaagttccttttcacttatca							TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	20000710	TG	TG	20000709	6	5	83	0	1	1	1	0	0	0	0	0	16555	29	1	0		0	TPTE2	13	20000709	Intron	INS	-	TCGA-17-Z054-01A-01W-0747-08		20000709	95169169	25	86596											
USP3	9960	broad.mit.edu	37	chr15	63866360	63866360	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccattcctaggtaagataTatgtggcatgtggatatata	9	5	0	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63866360	C	C	63866360	1	2	83	0	1	0	0	0	0	0	0	0	17187	1421	49	5		5	USP3	15	63866360	Intron	SNP	T	TCGA-17-Z054-01A-01W-0747-08		63866360	38665032	26	86597											
ABCC1	4363	broad.mit.edu	37	chr16	16180603	16180603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaagttctgggatcacaCcacactcggcctgcttctac	7	16	3	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16180603	A	A	16180603	1	1	83	0	1	0	0	0	0	0	0	0	49	522	18	3		3	ABCC1	16	16180603	Intron	SNP	C	TCGA-17-Z054-01A-01W-0747-08		16180603	74174150	27	86598											
MYO18A	399687	broad.mit.edu	37	chr17	27447912	27447912	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagaggggtttcggggggAtggaaaggccagggagaaaa	20	4	0	2			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27447912	G	G	27447912	1	3	83	0	1	0	0	0	0	0	0	0	10159	348	12	5		5	MYO18A	17	27447912	Intron	SNP	A	TCGA-17-Z054-01A-01W-0747-08		27447912	53747298	28	86599											
KRT24	192666	broad.mit.edu	37	chr17	38859835	38859836	+	Frame_Shift_Ins	INS	-	C	C													ggaagccctgggccgagctgINSccccccagaccacatctgct							TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38859836	C	C	38859835	7	5	83	1	0	1	1	0	0	0	0	0	8532	1306	46	0	1498	0	KRT24	17	38859835	Frame_Shift_Ins	INS	-	TCGA-17-Z054-01A-01W-0747-08	11411923	38859835	42335375	29	86600											
PLCD3	113026	broad.mit.edu	37	chr17	43194081	43194081	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggatggtgcagaggtggCgggccatggcagcctgctgc	18	11	0	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43194081	T	T	43194081	3	4	83	1	0	0	0	0	1	0	0	0	12127	768	27	4	1069	4	PLCD3	17	43194081	Missense_Mutation	SNP	C	TCGA-17-Z054-01A-01W-0747-08	4334246	43194081	38001129	30	86601											
DNMT1	1786	broad.mit.edu	37	chr19	10265690	10265690	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcagcccaaatatgggcGcatactcgggactgggatcc	12	12	1	0			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10265690	A	A	10265690	3	1	83	1	0	0	0	0	1	0	0	0	4715	1087	38	4	3451	4	DNMT1	19	10265690	Missense_Mutation	SNP	G	TCGA-17-Z054-01A-01W-0747-08		10265690	48863293	31	86602											
ZNF99	7652	broad.mit.edu	37	chr19	22940442	22940442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttgcagggtttctctgCagtatgaattaccttatgta	8	7	1	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22940442	A	A	22940442	3	1	83	1	0	0	0	0	1	0	0	0	18333	710	25	3	1128	3	ZNF99	19	22940442	Missense_Mutation	SNP	C	TCGA-17-Z054-01A-01W-0747-08	12674752	22940442	36188541	32	86603											
NKPD1	284353	broad.mit.edu	37	chr19	45655241	45655241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggacggaagagcgcacaGgccaccggccatagcttgcc	13	15	0	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45655241	T	T	45655241	2	4	83	1	0	0	0	0	0	0	0	1	10541	987	35	2		2	NKPD1	19	45655241	Silent	SNP	G	TCGA-17-Z054-01A-01W-0747-08	22714799	45655241	13473742	33	86604											
TH1L	51497	broad.mit.edu	37	chr20	57567926	57567927	+	Intron	INS	-	G	G													aaaaaaaaaaaaaaagggttINSggggggcgtattgaagggtg							TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57567927	G	G	57567926	6	5	83	0	1	1	1	0	0	0	0	0	15962	1827	63	0		0	TH1L	20	57567926	Intron	INS	-	TCGA-17-Z054-01A-01W-0747-08		57567926	5457594	34	86605											
CABLES2	81928	broad.mit.edu	37	chr20	60967947	60967947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacaggtgtgcagctgcctGcacccaggccctgggagagg	17	12	0	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60967947	A	A	60967947	1	1	83	0	1	0	0	0	0	0	0	0	2556	1334	46	4		4	CABLES2	20	60967947	Intron	SNP	G	TCGA-17-Z054-01A-01W-0747-08	3400021	60967947	2057573	35	86606											
BRWD1	54014	broad.mit.edu	37	chr21	40641666	40641666	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatttcatgtatgtacgtAtatacatgtagctgtctaat	7	5	2	1			TCGA-17-Z054-01A-01W-0747-08	TCGA-17-Z054-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40641666	G	G	40641666	1	3	83	0	1	0	0	0	0	0	0	0	1534	464	16	5		5	BRWD1	21	40641666	Intron	SNP	A	TCGA-17-Z054-01A-01W-0747-08		40641666	7488229	36	86607											
PRDM16	63976	broad.mit.edu	37	chr1	3342312	3342312	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacgagcacgagaacgcacCaggtgggccacgcggggtgg	18	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3342312	T	T	3342312	3	4	84	1	0	0	0	0	1	0	0	0	12563	594	21	4	3157	4	PRDM16	1	3342312	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08		3342312	245908309	1	86608											
UBE4B	10277	broad.mit.edu	37	chr1	10209374	10209374	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattttacatagttctaatAtgtttttatgcataatagta	4	3	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10209374	T	T	10209374	1	4	84	0	1	0	0	0	0	0	0	0	17009	464	16	5		5	UBE4B	1	10209374	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	6867062	10209374	239041247	2	86609											
KIF1B	23095	broad.mit.edu	37	chr1	10402019	10402019	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccttgcctcaaaaaaaaaAaaaaaaacccaaaatacgta	3	9	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10402019	G	G	10402019	1	3	84	0	1	0	0	0	0	0	0	0	8354	29	1	5		5	KIF1B	1	10402019	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	192645	10402019	238848602	3	86610											
C1orf127	148345	broad.mit.edu	37	chr1	11008106	11008106	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaactgccaggggcgctgCcagcctcaccctgggcatcc	12	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11008106	T	T	11008106	3	4	84	1	0	0	0	0	1	0	0	0	2014	739	26	4	389	4	C1orf127	1	11008106	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	606087	11008106	238242515	4	86611											
PTCHD2	57540	broad.mit.edu	37	chr1	11584135	11584135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcactgggggtggagggtGgggaaatcctccctggtgct	19	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11584135	T	T	11584135	1	4	84	0	1	0	0	0	0	0	0	0	12839	1363	47	2		2	PTCHD2	1	11584135	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	576029	11584135	237666486	5	86612											
PTCHD2	57540	broad.mit.edu	37	chr1	11595692	11595692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagaacctgcccccccaCcaggccgaggtgcgcaccct	12	18	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11595692	A	A	11595692	3	1	84	1	0	0	0	0	1	0	0	0	12839	506	18	3	3881	3	PTCHD2	1	11595692	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	11557	11595692	237654929	6	86613											
VPS13D	55187	broad.mit.edu	37	chr1	12381896	12381896	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccgactagggaatgagcatGatacagctctttcaattgtg	11	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12381896	A	A	12381896	3	1	84	1	0	0	0	0	1	0	0	0	17319	1290	45	4	7705	4	VPS13D	1	12381896	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	786204	12381896	236868725	7	86614											
C1orf158	93190	broad.mit.edu	37	chr1	12815839	12815839	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacaccagccagcttcttaTaggcttagtaccgtcttggg	11	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12815839	C	C	12815839	1	2	84	0	1	0	0	0	0	0	0	0	2027	1421	49	5		5	C1orf158	1	12815839	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	433943	12815839	236434782	8	86615											
CELA2A	63036	broad.mit.edu	37	chr1	15789224	15789224	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccctgggccccctttctcCcagctcctccaggacctacc	6	22	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15789224	G	G	15789224	1	3	84	0	1	0	0	0	0	0	0	0	3241	638	22	4		4	CELA2A	1	15789224	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2973385	15789224	233461397	9	86616											
SPATA21	374955	broad.mit.edu	37	chr1	16736612	16736612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatctcctccctgccatccCctctccagagatcctcagac	4	19	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16736612	T	T	16736612	1	4	84	0	1	0	0	0	0	0	0	0	15123	638	22	4		4	SPATA21	1	16736612	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	947388	16736612	232514009	10	86617											
PADI4	23569	broad.mit.edu	37	chr1	17666105	17666105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtggggtgtgaggctccaCcaggaggtgaggtggctatg	20	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17666105	A	A	17666105	1	1	84	0	1	0	0	0	0	0	0	0	11474	522	18	3		3	PADI4	1	17666105	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	929493	17666105	231584516	11	86618											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17914164	17914164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtttctgggaacttccGgtcctggggctacagggagc	15	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17914164	T	T	17914164	1	4	84	0	1	0	0	0	0	0	0	0	897	1131	39	1		1	ARHGEF10L	1	17914164	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	248059	17914164	231336457	12	86619											
PAX7	5081	broad.mit.edu	37	chr1	19026998	19026998	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctatgaaatcactctgcaaAgcgtcctgtgctgcacaatg	8	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19026998	T	T	19026998	1	4	84	0	1	0	0	0	0	0	0	0	11578	87	3	5		5	PAX7	1	19026998	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1112834	19026998	230223623	13	86620											
TMCO4	255104	broad.mit.edu	37	chr1	20009512	20009512	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatggagactggggaagacGgctcaggtcccctgctgtgg	16	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20009512	A	A	20009512	1	1	84	0	1	0	0	0	0	0	0	0	16121	1131	39	4		4	TMCO4	1	20009512	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	982514	20009512	229241109	14	86621											
PLA2G2C	391013	broad.mit.edu	37	chr1	20490554	20490554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtttttctcataggtgGgcaggctctctttgaagcag	12	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20490554	T	T	20490554	3	4	84	1	0	0	0	0	1	0	0	0	12091	1232	43	2	73	2	PLA2G2C	1	20490554	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	481042	20490554	228760067	15	86622											
ECE1	1889	broad.mit.edu	37	chr1	21605684	21605684	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaacacgaaggcacctacTtgtctggtactggatgccca	10	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21605684	C	C	21605684	3	2	84	1	0	0	0	0	1	0	0	0	4929	1623	56	5	2100	5	ECE1	1	21605684	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1115130	21605684	227644937	16	86623											
EPHA8	2046	broad.mit.edu	37	chr1	22895780	22895780	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcttgtctcctgttttacAgtgaatttgctggacacgtc	8	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22895780	T	T	22895780	5	4	84	1	0	0	0	0	0	0	1	0	5215	202	7	5	99	5	EPHA8	1	22895780	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1290096	22895780	226354841	17	86624											
MYOM3	127294	broad.mit.edu	37	chr1	24433565	24433565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggcccacccccttacccGccgcctcagcgtcttccagt	7	22	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24433565	T	T	24433565	2	4	84	1	0	0	0	0	0	0	0	1	10187	1086	38	3		3	MYOM3	1	24433565	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1537785	24433565	224817056	18	86625											
IL28RA	163702	broad.mit.edu	37	chr1	24484251	24484251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgtctgttgggtggctGgggccctgactcgaggcgtc	16	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24484251	T	T	24484251	3	4	84	1	0	0	0	0	1	0	0	0	7754	1348	47	2	634	2	IL28RA	1	24484251	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	50686	24484251	224766370	19	86626											
NIPAL3	57185	broad.mit.edu	37	chr1	24795651	24795651	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctggggtcccctaccgagtCctagagcacaccaagaagga	11	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24795651	G	G	24795651	2	3	84	1	0	0	0	0	0	0	0	1	10521	842	30	4		4	NIPAL3	1	24795651	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	311400	24795651	224454970	20	86627											
CNKSR1	10256	broad.mit.edu	37	chr1	26509805	26509805	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcctctcacctgcaagccAggccaacctcaggccccatt	8	18	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26509805	T	T	26509805	1	4	84	0	1	0	0	0	0	0	0	0	3638	203	7	5		5	CNKSR1	1	26509805	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1714154	26509805	222740816	21	86628											
ARID1A	8289	broad.mit.edu	37	chr1	27097665	27097665	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacctcaatgtgggcacatCaagcagtgctgccagctcct	9	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27097665	G	G	27097665	4	3	84	1	0	0	0	0	0	1	0	0	915	838	29	4	3300	4	ARID1A	1	27097665	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	587860	27097665	222152956	22	86629											
GPATCH3	63906	broad.mit.edu	37	chr1	27219137	27219137	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaagagaggggtccatGgggtgggcacagtgctaact	17	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27219137	A	A	27219137	1	1	84	0	1	0	0	0	0	0	0	0	6657	1363	47	4		4	GPATCH3	1	27219137	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	121472	27219137	222031484	23	86630											
DNAJC8	22826	broad.mit.edu	37	chr1	28555403	28555403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaaatctcccccattaCagaggccctagcaacatcaa	5	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28555403	T	T	28555403	1	4	84	0	1	0	0	0	0	0	0	0	4695	493	17	4		4	DNAJC8	1	28555403	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1336266	28555403	220695218	24	86631											
CSMD2	114784	broad.mit.edu	37	chr1	34076770	34076770	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatcttcccatcatgcggcTggtctcataggggccattcc	10	13	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34076770	A	A	34076770	3	1	84	1	0	0	0	0	1	0	0	0	3979	1580	55	5	4485	5	CSMD2	1	34076770	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5521367	34076770	215173851	25	86632											
CSMD2	114784	broad.mit.edu	37	chr1	34100922	34100922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaacccacatactgtccccCacagggggctgaaagagaaa	10	13	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34100922	A	A	34100922	3	1	84	1	0	0	0	0	1	0	0	0	3979	594	21	2	5761	2	CSMD2	1	34100922	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	24152	34100922	215149699	26	86633											
DLGAP3	58512	broad.mit.edu	37	chr1	35370205	35370206	+	Missense_Mutation	DNP	CC	AA	AA													aagttgtcatcggaactccaCcagcctgtggacttggcctg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	35370206	AA	AA	35370205	3	1	84	1	0	0	0	0	1	0	0	0	4601	508	18	3	2199	3	DLGAP3	1	35370205	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	1269283	35370205	213880416	27	86634											
CLSPN	63967	broad.mit.edu	37	chr1	36226707	36226707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttcttacttcaatagtgCcatggcatttccgtggcaag	11	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36226707	A	A	36226707	3	1	84	1	0	0	0	0	1	0	0	0	3592	739	26	3	3101	3	CLSPN	1	36226707	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	856502	36226707	213023914	28	86635											
OSCP1	127700	broad.mit.edu	37	chr1	36887719	36887719	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccgtatctagagagaagcTgtgagggtaggcaaggaagg	16	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36887719	A	A	36887719	1	1	84	0	1	0	0	0	0	0	0	0	11380	1595	55	5		5	OSCP1	1	36887719	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	661012	36887719	212362902	29	86636											
GRIK3	2899	broad.mit.edu	37	chr1	37291266	37291266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaacatacatccagatGtctggggacaggggattgag	15	6	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37291266	T	T	37291266	3	4	84	1	0	0	0	0	1	0	0	0	6841	1368	48	3	1091	3	GRIK3	1	37291266	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	403547	37291266	211959355	30	86637											
GNL2	29889	broad.mit.edu	37	chr1	38032463	38032463	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccttttaaacattactgcTtttgtctgaattttttgcgt	5	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38032463	A	A	38032463	3	1	84	1	0	0	0	0	1	0	0	0	6600	1609	56	5	10	5	GNL2	1	38032463	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	741197	38032463	211218158	31	86638											
EPHA10	284656	broad.mit.edu	37	chr1	38227522	38227522	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgcccacggcccaggtcGgcctcagtttccaggtagta	13	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38227522	A	A	38227522	2	1	84	1	0	0	0	0	0	0	0	1	5208	1103	39	4		4	EPHA10	1	38227522	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	195059	38227522	211023099	32	86639											
MACF1	23499	broad.mit.edu	37	chr1	39927704	39927704	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgatgcagataaaatcgaaGatgaggtaagggaaataatt	11	4	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39927704	A	A	39927704	3	1	84	1	0	0	0	0	1	0	0	0	9232	942	33	4	22001	4	MACF1	1	39927704	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1700182	39927704	209322917	33	86640											
GUCA2A	2980	broad.mit.edu	37	chr1	42628556	42628556	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctgctgcggaggggagGcaggcagtgggcaagccccc	17	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42628556	T	T	42628556	1	4	84	0	1	0	0	0	0	0	0	0	6956	1218	42	3		3	GUCA2A	1	42628556	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2700852	42628556	206622065	34	86641											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43630300	43630300	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcctcacccgggcacCtgggctcacttacatttgac	8	17	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43630300	T	T	43630300	1	4	84	0	1	0	0	0	0	0	0	0	4925	696	24	4		4	EBNA1BP2	1	43630300	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1001744	43630300	205620321	35	86642											
TIE1	7075	broad.mit.edu	37	chr1	43788445	43788445	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccggagcaaactctgctgtCtaacctgtgaccagtctgac	10	13	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43788445	A	A	43788445	1	1	84	0	1	0	0	0	0	0	0	0	16016	928	32	3		3	TIE1	1	43788445	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	158145	43788445	205462176	36	86643											
KIAA0467	23334	broad.mit.edu	37	chr1	43880661	43880661	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggaagtcaggatcgccTagatggagctatggagaata	15	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43880661	C	C	43880661	1	2	84	0	1	0	0	0	0	0	0	0	8248	1537	53	5		5	KIAA0467	1	43880661	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	92216	43880661	205369960	37	86644											
PTPRF	5792	broad.mit.edu	37	chr1	44069226	44069226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgaggggtcaggacggAcctgagggtggggcagcagg	22	6	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44069226	T	T	44069226	1	4	84	0	1	0	0	0	0	0	0	0	12909	290	10	5		5	PTPRF	1	44069226	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	188565	44069226	205181395	38	86645											
PIK3R3	8503	broad.mit.edu	37	chr1	46570800	46570800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattggaatagaatggaacCtgtcccctgatgggagagtc	12	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46570800	A	A	46570800	1	1	84	0	1	0	0	0	0	0	0	0	12015	696	24	2		2	PIK3R3	1	46570800	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2501574	46570800	202679821	39	86646											
ELAVL4	1996	broad.mit.edu	37	chr1	50642944	50642944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggtaaatccaggctatGtgggggctggaagcagtgtt	15	6	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50642944	T	T	50642944	1	4	84	0	1	0	0	0	0	0	0	0	5094	1392	48	3		3	ELAVL4	1	50642944	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4072144	50642944	198607677	40	86647											
ORC1L	4998	broad.mit.edu	37	chr1	52863628	52863628	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacactgtgcttaaccctTgacatgtgtggttttgtttt	9	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52863628	C	C	52863628	1	2	84	0	1	0	0	0	0	0	0	0	11355	1827	63	5		5	ORC1L	1	52863628	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2220684	52863628	196386993	41	86648											
C8A	731	broad.mit.edu	37	chr1	57372415	57372415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagacaaaataaatgttgGtggaggtttatcaggagacc	12	4	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57372415	T	T	57372415	3	4	84	1	0	0	0	0	1	0	0	0	2441	1261	44	3	1202	3	C8A	1	57372415	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4508787	57372415	191878206	42	86649											
C8B	732	broad.mit.edu	37	chr1	57417949	57417949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaaaacaaaaactccttgGcacagccttcaaggcccttg	7	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57417949	T	T	57417949	1	4	84	0	1	0	0	0	0	0	0	0	2442	1218	42	3		3	C8B	1	57417949	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	45534	57417949	191832672	43	86650											
DAB1	1600	broad.mit.edu	37	chr1	57489188	57489188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaaaggaagggaagctgGtggaagagggcttacctgag	18	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57489188	T	T	57489188	1	4	84	0	1	0	0	0	0	0	0	0	4250	1276	44	3		3	DAB1	1	57489188	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	71239	57489188	191761433	44	86651											
KANK4	163782	broad.mit.edu	37	chr1	62732375	62732375	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcttaaacagaagggaaatCtttacatgacaatgaaaaat	7	5	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62732375	G	G	62732375	1	3	84	0	1	0	0	0	0	0	0	0	8049	928	32	4		4	KANK4	1	62732375	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5243187	62732375	186518246	45	86652											
ROR1	4919	broad.mit.edu	37	chr1	64515528	64515528	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggctctcctttcggtccaCcatctatggctctcggctgc	10	15	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64515528	G	G	64515528	3	3	84	1	0	0	0	0	1	0	0	0	13637	507	18	4	339	4	ROR1	1	64515528	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1783153	64515528	184735093	46	86653											
IL23R	149233	broad.mit.edu	37	chr1	67685422	67685422	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgaaacaggtgagtgtActtatatattttattctgtt	7	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67685422	C	C	67685422	1	2	84	0	1	0	0	0	0	0	0	0	7746	406	14	5		5	IL23R	1	67685422	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3169894	67685422	181565199	47	86654											
C1orf173	127254	broad.mit.edu	37	chr1	75072442	75072442	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggttttgttctccttgatCtcatttctttttggtatcac	7	8	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75072442	T	T	75072442	2	4	84	1	0	0	0	0	0	0	0	1	2034	912	32	4		4	C1orf173	1	75072442	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	7387020	75072442	174178179	48	86655											
CRYZ	1429	broad.mit.edu	37	chr1	75175924	75175924	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcaatttggcatgctgctAatccaacctgaaaaacaaat	6	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75175924	T	T	75175924	4	4	84	1	0	0	0	0	0	1	0	0	3954	372	13	5	517	5	CRYZ	1	75175924	Nonsense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	103482	75175924	174074697	49	86656											
TYW3	127253	broad.mit.edu	37	chr1	75229546	75229546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttcgtttcagtacacaCagatataatagtagtactta	5	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75229546	A	A	75229546	1	1	84	0	1	0	0	0	0	0	0	0	16946	493	17	3		3	TYW3	1	75229546	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	53622	75229546	174021075	50	86657											
LHX8	431707	broad.mit.edu	37	chr1	75614246	75614246	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcttgtttttagctattTactacatacatgttttaaac	5	7	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75614246	C	C	75614246	1	2	84	0	1	0	0	0	0	0	0	0	8848	1769	61	5		5	LHX8	1	75614246	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	384700	75614246	173636375	51	86658											
SLC44A5	204962	broad.mit.edu	37	chr1	75677070	75677070	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtaacagcagatccccAagccagctaaggacatgggc	11	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75677070	T	T	75677070	1	4	84	0	1	0	0	0	0	0	0	0	14753	145	5	5		5	SLC44A5	1	75677070	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	62824	75677070	173573551	52	86659											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77333342	77333342	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgagcctgaggattctgCacaaaagaggtgcccaaaat	12	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77333342	G	G	77333342	1	3	84	0	1	0	0	0	0	0	0	0	15345	725	25	4		4	ST6GALNAC5	1	77333342	5'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1656272	77333342	171917279	53	86660											
FAM73A	374986	broad.mit.edu	37	chr1	78309084	78309084	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacggattcctttgcttccGcagcagaggtaggacatatg	11	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78309084	A	A	78309084	3	1	84	1	0	0	0	0	1	0	0	0	5668	1087	38	4	1018	4	FAM73A	1	78309084	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	975742	78309084	170941537	54	86661											
GIPC2	54810	broad.mit.edu	37	chr1	78560826	78560826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcatttggtaagtcagGggttggtgggcgggtgtgtg	21	3	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78560826	T	T	78560826	1	4	84	0	1	0	0	0	0	0	0	0	6457	1247	43	2		2	GIPC2	1	78560826	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	251742	78560826	170689795	55	86662											
ELTD1	64123	broad.mit.edu	37	chr1	79383636	79383636	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccttgttgtagatgacacCcacaacaatgagatagagat	8	9	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79383636	G	G	79383636	3	3	84	1	0	0	0	0	1	0	0	0	5126	623	22	4	531	4	ELTD1	1	79383636	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	822810	79383636	169866985	56	86663											
LPHN2	23266	broad.mit.edu	37	chr1	82302730	82302730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgtaatcagcttcttaCcaaatacagaaggtaagatc	6	8	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82302730	A	A	82302730	3	1	84	1	0	0	0	0	1	0	0	0	9003	507	18	3	63	3	LPHN2	1	82302730	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2919094	82302730	166947891	57	86664											
LPHN2	23266	broad.mit.edu	37	chr1	82409389	82409389	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagataaccaactttaCgtgtggaacaataacttcat	6	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82409389	A	A	82409389	4	1	84	1	0	0	0	0	0	1	0	0	9003	547	19	3	1148	3	LPHN2	1	82409389	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	106659	82409389	166841232	58	86665											
LPHN2	23266	broad.mit.edu	37	chr1	82436237	82436237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtaagtaattgcaagcgaCctgagtgtttttcaagtgaa	11	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82436237	A	A	82436237	1	1	84	0	1	0	0	0	0	0	0	0	9003	522	18	3		3	LPHN2	1	82436237	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	26848	82436237	166814384	59	86666											
TTLL7	79739	broad.mit.edu	37	chr1	84414310	84414310	+	Splice_Site	DEL	C	-	-													ttacaagaaaataaagattaCttggtcatatttcttgctaa							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84414310	-	-	84414310	8	5	84	1	0	1	0	1	0	0	1	0	16858	579	20	0	2383	0	TTLL7	1	84414310	Splice_Site	DEL	C	TCGA-17-Z055-01A-01W-0747-08	1978073	84414310	164836311	60	86667											
CLCA4	22802	broad.mit.edu	37	chr1	87033185	87033185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaaatggatcctgggtgGggatggttcactttgatagt	14	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87033185	T	T	87033185	3	4	84	1	0	0	0	0	1	0	0	0	3490	1232	43	2	1059	2	CLCA4	1	87033185	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2618875	87033185	162217436	61	86668											
CLCA4	22802	broad.mit.edu	37	chr1	87041101	87041101	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcgagcagcaaattcttcTgtgcctccaatcacagtgaa	7	12	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87041101	A	A	87041101	2	1	84	1	0	0	0	0	0	0	0	1	3490	1567	55	5		5	CLCA4	1	87041101	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	7916	87041101	162209520	62	86669											
PKN2	5586	broad.mit.edu	37	chr1	89279417	89279417	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgaaccaagagctgtGtgagtatgctttagacattt	9	6	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89279417	T	T	89279417	5	4	84	1	0	0	0	0	0	0	1	0	12075	1391	48	3	2342	3	PKN2	1	89279417	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2238316	89279417	159971204	63	86670											
ZNF326	284695	broad.mit.edu	37	chr1	90482956	90482956	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatctggaaagttcttcacAtcaggaaacattagatcata	7	8	5	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90482956	G	G	90482956	3	3	84	1	0	0	0	0	1	0	0	0	17972	217	8	5	1041	5	ZNF326	1	90482956	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1203539	90482956	158767665	64	86671											
CCDC18	343099	broad.mit.edu	37	chr1	93702067	93702067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgtctccatagtctgtGttcctattgcattttgtttg	7	7	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93702067	T	T	93702067	1	4	84	0	1	0	0	0	0	0	0	0	2821	1392	48	3		3	CCDC18	1	93702067	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3219111	93702067	155548554	65	86672											
TMEM56	148534	broad.mit.edu	37	chr1	95639516	95639516	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgggcaaatccttttccCgtgatcctcaagttactata	7	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95639516	T	T	95639516	1	4	84	0	1	0	0	0	0	0	0	0	16306	667	23	4		4	TMEM56	1	95639516	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1937449	95639516	153611105	66	86673											
DBT	1629	broad.mit.edu	37	chr1	100715330	100715330	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccaaacgtgcttaccagcTtccccgcattcctgctccag	7	18	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100715330	A	A	100715330	3	1	84	1	0	0	0	0	1	0	0	0	4291	1609	56	5	1445	5	DBT	1	100715330	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5075814	100715330	148535291	67	86674											
VCAM1	7412	broad.mit.edu	37	chr1	101203756	101203756	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccttaataatacctgccAttggaatgataatttacttt	4	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101203756	G	G	101203756	3	3	84	1	0	0	0	0	1	0	0	0	17264	217	8	5	2171	5	VCAM1	1	101203756	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	488426	101203756	148046865	68	86675											
C1orf59	113802	broad.mit.edu	37	chr1	109193887	109193887	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttcacttgcacctatttTtctaattgatttatcaaaaa	3	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109193887	C	C	109193887	1	2	84	0	1	0	0	0	0	0	0	0	2073	1856	64	5		5	C1orf59	1	109193887	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	7990131	109193887	140056734	69	86676											
PSMA5	5686	broad.mit.edu	37	chr1	109964362	109964362	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatggttaacagtggttgcTtaaagggatataagaacatt	10	3	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109964362	A	A	109964362	1	1	84	0	1	0	0	0	0	0	0	0	12776	1624	56	5		5	PSMA5	1	109964362	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	770475	109964362	139286259	70	86677											
SYT6	148281	broad.mit.edu	37	chr1	114682494	114682494	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccttgttcctccagggcatCcagcacagcttccaaaagag	8	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114682494	G	G	114682494	1	3	84	0	1	0	0	0	0	0	0	0	15597	870	30	4		4	SYT6	1	114682494	5'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4718132	114682494	134568127	71	86678											
DENND2C	163259	broad.mit.edu	37	chr1	115079855	115079855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatcgtcctcaccaagtcTggcaggtctgctcaccaggt	9	13	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115079855	A	A	115079855	1	1	84	0	1	0	0	0	0	0	0	0	4470	1595	55	5		5	DENND2C	1	115079855	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	397361	115079855	134170766	72	86679											
DENND2C	163259	broad.mit.edu	37	chr1	115143518	115143518	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggagcttccatgacacTtcgcatgaatgggtaaacaa	10	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115143518	C	C	115143518	3	2	84	1	0	0	0	0	1	0	0	0	4470	1609	56	5	939	5	DENND2C	1	115143518	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	63663	115143518	134107103	73	86680											
ATP1A1	476	broad.mit.edu	37	chr1	116940601	116940601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtaccacactgagataGtgtttgccaggacctcccct	9	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116940601	T	T	116940601	3	4	84	1	0	0	0	0	1	0	0	0	1132	1029	36	3	2139	3	ATP1A1	1	116940601	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1797083	116940601	132310020	74	86681											
SPAG17	200162	broad.mit.edu	37	chr1	118629694	118629694	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttagtgatactcactgcTcattgctgcattcccactgc	6	13	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118629694	A	A	118629694	1	1	84	0	1	0	0	0	0	0	0	0	15095	1566	54	5		5	SPAG17	1	118629694	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1689093	118629694	130620927	75	86682											
HAO2	51179	broad.mit.edu	37	chr1	119935144	119935144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagataatccccatctttccCattatagctctgactacatc	3	14	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119935144	A	A	119935144	1	1	84	0	1	0	0	0	0	0	0	0	7018	609	21	2		2	HAO2	1	119935144	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1305450	119935144	129315477	76	86683											
PHGDH	26227	broad.mit.edu	37	chr1	120266066	120266066	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcatgtgcctggccaggTaagtccctgacttctcagca	10	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120266066	C	C	120266066	5	2	84	1	0	0	0	0	0	0	1	0	11936	1652	57	5	368	5	PHGDH	1	120266066	Splice_Site	SNP	T	TCGA-17-Z055-01A-01W-0747-08	330922	120266066	128984555	77	86684											
PDE4DIP	9659	broad.mit.edu	37	chr1	144921776	144921776	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacacaaactgtcctgctAaaaagttatgatcagggcaa	7	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144921776	G	G	144921776	1	3	84	0	1	0	0	0	0	0	0	0	11737	377	13	5		5	PDE4DIP	1	144921776	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	24655710	144921776	104328845	78	86685											
NBPF10	100132406	broad.mit.edu	37	chr1	145311786	145311786	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttttcctacttttccacGctcagcagggagctgctgga	9	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145311786	A	A	145311786	2	1	84	1	0	0	0	0	0	0	0	1	10287	1102	38	4		4	NBPF10	1	145311786	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	390010	145311786	103938835	79	86686											
HFE2	148738	broad.mit.edu	37	chr1	145416330	145416330	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagctcaccatcatatttaaGaacatgcaggaatgcattga	7	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145416330	C	C	145416330	3	2	84	1	0	0	0	0	1	0	0	0	7149	933	33	4	685	4	HFE2	1	145416330	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	104544	145416330	103834291	80	86687											
NBPF10	100132406	broad.mit.edu	37	chr1	145456767	145456767	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaaagtcaatttggcattCaccttccttcctgtgtacca	6	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145456767	A	A	145456767	1	1	84	0	1	0	0	0	0	0	0	0	10287	841	29	3		3	NBPF10	1	145456767	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	40437	145456767	103793854	81	86688											
NBPF10	100132406	broad.mit.edu	37	chr1	145646093	145646093	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctaatgaaaaagttttattTgtttcttcctttcttttata	3	5	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145646093	A	A	145646093	1	1	84	0	1	0	0	0	0	0	0	0	10287	1827	63	5		5	NBPF10	1	145646093	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	189326	145646093	103604528	82	86689											
CHD1L	9557	broad.mit.edu	37	chr1	146756783	146756783	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgccaatgctagggctgaGtttacagcatggtatcctgg	12	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146756783	C	C	146756783	1	2	84	0	1	0	0	0	0	0	0	0	3355	1044	36	4		4	CHD1L	1	146756783	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1110690	146756783	102493838	83	86690											
PRPF3	9129	broad.mit.edu	37	chr1	150315816	150315816	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaccagttactctgggagtAtatcttaccaagaaggaaca	8	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150315816	G	G	150315816	2	3	84	1	0	0	0	0	0	0	0	1	12671	436	16	5		5	PRPF3	1	150315816	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3559033	150315816	98934805	84	86691											
PRPF3	9129	broad.mit.edu	37	chr1	150325535	150325535	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctatttcccaaccccctcCcacttgtttgtgtgatctca	4	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150325535	T	T	150325535	1	4	84	0	1	0	0	0	0	0	0	0	12671	638	22	4		4	PRPF3	1	150325535	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9719	150325535	98925086	85	86692											
CTSS	1520	broad.mit.edu	37	chr1	150722682	150722682	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaatatgatgaagtatacTtcaactcctgtataaatcac	4	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150722682	G	G	150722682	1	3	84	0	1	0	0	0	0	0	0	0	4075	1624	56	5		5	CTSS	1	150722682	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	397147	150722682	98527939	86	86693											
SNX27	81609	broad.mit.edu	37	chr1	151630912	151630912	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctagaaaaaggtaatccaAaccatcaaactctactatat	3	9	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151630912	T	T	151630912	1	4	84	0	1	0	0	0	0	0	0	0	15011	29	1	5		5	SNX27	1	151630912	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	908230	151630912	97619709	87	86694											
FLG	2312	broad.mit.edu	37	chr1	152279965	152279965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctccactgcttgaccccGggtgtccatgaatggtgtcc	10	14	0	2	rs149160509		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279965	T	T	152279965	3	4	84	1	0	0	0	0	1	0	0	0	5979	1116	39	1	4792	1	FLG	1	152279965	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	649053	152279965	96970656	88	86695											
FLG2	388698	broad.mit.edu	37	chr1	152325345	152325345	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtcctggaccctctctgTgtggactgtccatgaccaga	11	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152325345	G	G	152325345	2	3	84	1	0	0	0	0	0	0	0	1	5980	1683	59	5		5	FLG2	1	152325345	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	45380	152325345	96925276	89	86696											
LCE2D	353141	broad.mit.edu	37	chr1	152636873	152636873	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgagagtgaaccttctGgggcctctggctgctgccac	14	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152636873	C	C	152636873	3	2	84	1	0	0	0	0	1	0	0	0	8740	1348	47	4	294	4	LCE2D	1	152636873	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	311528	152636873	96613748	90	86697											
LCE2B	26239	broad.mit.edu	37	chr1	152659577	152659577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccaccggcgccggcaCcagagccccgactgctgtga	11	18	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152659577	A	A	152659577	3	1	84	1	0	0	0	0	1	0	0	0	8738	506	18	3	260	3	LCE2B	1	152659577	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	22704	152659577	96591044	91	86698											
GATAD2B	57459	broad.mit.edu	37	chr1	153784646	153784646	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaggtgattgagcaggacAgcacccaatacccaatttcc	8	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153784646	G	G	153784646	1	3	84	0	1	0	0	0	0	0	0	0	6323	203	7	5		5	GATAD2B	1	153784646	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1125069	153784646	95465975	92	86699											
TDRD10	126668	broad.mit.edu	37	chr1	154514497	154514497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacctttcatttttcttccCaggtgttggagaaggcttct	9	9	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154514497	A	A	154514497	1	1	84	0	1	0	0	0	0	0	0	0	15853	609	21	2		2	TDRD10	1	154514497	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	729851	154514497	94736124	93	86700											
KCNN3	3782	broad.mit.edu	37	chr1	154744658	154744658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgggcgatcaggtacaggCgcaggaacatggggatagac	16	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154744658	A	A	154744658	3	1	84	1	0	0	0	0	1	0	0	0	8150	768	27	3	978	3	KCNN3	1	154744658	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	230161	154744658	94505963	94	86701											
THBS3	7059	broad.mit.edu	37	chr1	155174750	155174750	+	Splice_Site	DEL	T	-	-													tcatagattccacaaagcccTggggggatagcagcagagta							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155174750	-	-	155174750	8	5	84	1	0	1	0	1	0	0	1	0	15978	1594	55	0	2408	0	THBS3	1	155174750	Splice_Site	DEL	T	TCGA-17-Z055-01A-01W-0747-08	430092	155174750	94075871	95	86702											
YY1AP1	55249	broad.mit.edu	37	chr1	155629622	155629622	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcgataggcactgttctcTgacaatccttcttggcactg	9	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155629622	G	G	155629622	2	3	84	1	0	0	0	0	0	0	0	1	17635	1567	55	5		5	YY1AP1	1	155629622	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	454872	155629622	93620999	96	86703											
GON4L	54856	broad.mit.edu	37	chr1	155823635	155823635	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttactgccttcatattaaTtaaaagtaataacatttact	2	7	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155823635	C	C	155823635	1	2	84	0	1	0	0	0	0	0	0	0	6636	1508	52	5		5	GON4L	1	155823635	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	194013	155823635	93426986	97	86704											
SMG5	23381	broad.mit.edu	37	chr1	156221313	156221313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggagcaggagactggCagggtgccttacacaaagca	15	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156221313	A	A	156221313	1	1	84	0	1	0	0	0	0	0	0	0	14910	725	25	3		3	SMG5	1	156221313	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	397678	156221313	93029308	98	86705											
IQGAP3	128239	broad.mit.edu	37	chr1	156501136	156501136	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagagtaagtggaccgtgctCtatagcatggctgctaggat	14	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156501136	A	A	156501136	1	1	84	0	1	0	0	0	0	0	0	0	7886	928	32	3		3	IQGAP3	1	156501136	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	279823	156501136	92749485	99	86706											
NES	10763	broad.mit.edu	37	chr1	156639829	156639829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggttctgccacctccCcagggaccccaggaagaaaa	10	15	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156639829	A	A	156639829	3	1	84	1	0	0	0	0	1	0	0	0	10432	623	22	2	718	2	NES	1	156639829	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	138693	156639829	92610792	100	86707											
INSRR	3645	broad.mit.edu	37	chr1	156812316	156812316	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcacctgggacagacaaagGgcctagcagaccccctagtt	11	14	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156812316	A	A	156812316	1	1	84	0	1	0	0	0	0	0	0	0	7844	1247	43	4		4	INSRR	1	156812316	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	172487	156812316	92438305	101	86708											
NTRK1	4914	broad.mit.edu	37	chr1	156841653	156841653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggtgggatgtgtgtctcCacagctgctccctcccagct	12	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156841653	A	A	156841653	1	1	84	0	1	0	0	0	0	0	0	0	10801	609	21	2		2	NTRK1	1	156841653	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	29337	156841653	92408968	102	86709											
NTRK1	4914	broad.mit.edu	37	chr1	156849987	156849987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccccttgctggcctccCcgtcccatgccccttcaggt	8	20	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156849987	A	A	156849987	1	1	84	0	1	0	0	0	0	0	0	0	10801	638	22	2		2	NTRK1	1	156849987	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	8334	156849987	92400634	103	86710											
ARHGEF11	9826	broad.mit.edu	37	chr1	156907157	156907157	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttggatcatcgttgcctcCctgcagctgaggctgaggct	12	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156907157	G	G	156907157	3	3	84	1	0	0	0	0	1	0	0	0	898	632	22	4	376	4	ARHGEF11	1	156907157	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	57170	156907157	92343464	104	86711											
ARHGEF11	9826	broad.mit.edu	37	chr1	156916722	156916722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagggagaagtttggagCcatacccgggccagcatgag	15	9	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156916722	A	A	156916722	1	1	84	0	1	0	0	0	0	0	0	0	898	754	26	3		3	ARHGEF11	1	156916722	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9565	156916722	92333899	105	86712											
FCRL4	83417	broad.mit.edu	37	chr1	157559361	157559361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatccctaagatgcccccGgatgacttctgtttacccag	9	13	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157559361	T	T	157559361	1	4	84	0	1	0	0	0	0	0	0	0	5854	1131	39	1		1	FCRL4	1	157559361	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	642639	157559361	91691260	106	86713											
FCRL3	115352	broad.mit.edu	37	chr1	157660280	157660280	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcccccaccacagcctgGgccccgggagccctgagggt	14	17	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157660280	A	A	157660280	2	1	84	1	0	0	0	0	0	0	0	1	5853	1219	43	4		4	FCRL3	1	157660280	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	100919	157660280	91590341	107	86714											
CD1D	912	broad.mit.edu	37	chr1	158147259	158147259	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggagaatgtttgctggaCgcagtcaaagctgccctgag	14	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158147259	A	A	158147259	1	1	84	0	1	0	0	0	0	0	0	0	3007	551	19	3		3	CD1D	1	158147259	5'Flank	SNP	C	TCGA-17-Z055-01A-01W-0747-08	486979	158147259	91103362	108	86715											
CD1A	909	broad.mit.edu	37	chr1	158226612	158226612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcccatggccccagtcCtggccctggccatctgcagc	11	18	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158226612	A	A	158226612	3	1	84	1	0	0	0	0	1	0	0	0	3004	681	24	2	655	2	CD1A	1	158226612	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	79353	158226612	91024009	109	86716											
CD1A	909	broad.mit.edu	37	chr1	158227279	158227279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcttctgataggtcttGcgctttggttcaggaaacgc	10	9	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158227279	T	T	158227279	3	4	84	1	0	0	0	0	1	0	0	0	3004	1319	46	3	970	3	CD1A	1	158227279	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	667	158227279	91023342	110	86717											
PYHIN1	149628	broad.mit.edu	37	chr1	158911720	158911720	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgaagagcaattctgtattCctcactcaaaaatttctttt	4	9	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158911720	G	G	158911720	1	3	84	0	1	0	0	0	0	0	0	0	12973	870	30	4		4	PYHIN1	1	158911720	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	684441	158911720	90338901	111	86718											
PYHIN1	149628	broad.mit.edu	37	chr1	158913723	158913723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcgactgagaaagagGgaaaatatgtcaaaactgat	10	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158913723	T	T	158913723	3	4	84	1	0	0	0	0	1	0	0	0	12973	1223	43	2	1164	2	PYHIN1	1	158913723	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2003	158913723	90336898	112	86719											
IFI16	3428	broad.mit.edu	37	chr1	159023243	159023243	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctatcaaagacaaaagtttCcagaaacaccctgtatttct	4	10	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159023243	A	A	159023243	1	1	84	0	1	0	0	0	0	0	0	0	7581	870	30	3		3	IFI16	1	159023243	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	109520	159023243	90227378	113	86720											
FCRL6	343413	broad.mit.edu	37	chr1	159785243	159785243	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgctgagttcaccgtgggGagaaaggtgagctgggatcc	16	8	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159785243	T	T	159785243	2	4	84	1	0	0	0	0	0	0	0	1	5856	1161	41	3		3	FCRL6	1	159785243	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	762000	159785243	89465378	114	86721											
IGSF8	93185	broad.mit.edu	37	chr1	160064892	160064892	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgcagtatctggggccTcgggcctatacaggaaccac	12	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160064892	A	A	160064892	3	1	84	1	0	0	0	0	1	0	0	0	7674	1551	54	5	1652	5	IGSF8	1	160064892	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	279649	160064892	89185729	115	86722											
DCAF8	50717	broad.mit.edu	37	chr1	160252958	160252958	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactacactgcacctggccTctgatagaagccacaggcag	11	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160252958	A	A	160252958	1	1	84	0	1	0	0	0	0	0	0	0	4309	1566	54	5		5	DCAF8	1	160252958	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	188066	160252958	88997663	116	86723											
COPA	1314	broad.mit.edu	37	chr1	160304984	160304984	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatcaaataaagattactaTggggaaactaagaatgctcc	9	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160304984	A	A	160304984	1	1	84	0	1	0	0	0	0	0	0	0	3759	1479	51	5		5	COPA	1	160304984	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	52026	160304984	88945637	117	86724											
VANGL2	57216	broad.mit.edu	37	chr1	160389144	160389144	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccccgcgtctttgtgctgcGtgccctgcttatggtgctgg	14	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160389144	C	C	160389144	3	2	84	1	0	0	0	0	1	0	0	0	17247	1145	40	4	555	4	VANGL2	1	160389144	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	84160	160389144	88861477	118	86725											
CD84	8832	broad.mit.edu	37	chr1	160535445	160535445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgattttaacttgccgtGgttcttggatatttacaggg	10	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160535445	T	T	160535445	3	4	84	1	0	0	0	0	1	0	0	0	3072	1348	47	2	928	2	CD84	1	160535445	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	146301	160535445	88715176	119	86726											
LY9	4063	broad.mit.edu	37	chr1	160797673	160797673	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcagctggacctcatgggGcctggggctcacagacagaa	14	11	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160797673	T	T	160797673	1	4	84	0	1	0	0	0	0	0	0	0	9189	1218	42	3		3	LY9	1	160797673	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	262228	160797673	88452948	120	86727											
ITLN2	142683	broad.mit.edu	37	chr1	160920955	160920955	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaccagcgatcacccaccgTgcacttcccacgcatgtcat	8	17	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160920955	C	C	160920955	3	2	84	1	0	0	0	0	1	0	0	0	7981	1696	59	5	678	5	ITLN2	1	160920955	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	123282	160920955	88329666	121	86728											
APOA2	336	broad.mit.edu	37	chr1	161192312	161192312	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgacttttcaaagtaagaCctggataggtgaggggatta	12	4	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161192312	T	T	161192312	2	4	84	1	0	0	0	0	0	0	0	1	784	521	18	4		4	APOA2	1	161192312	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	271357	161192312	88058309	122	86729											
MPZ	4359	broad.mit.edu	37	chr1	161279650	161279650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaagagaagagcagcaCagccaggatagggctggggc	16	8	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161279650	A	A	161279650	3	1	84	1	0	0	0	0	1	0	0	0	9842	478	17	3	724	3	MPZ	1	161279650	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	87338	161279650	87970971	123	86730											
RXRG	6258	broad.mit.edu	37	chr1	165380195	165380195	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagcacataccgagttctcCatattcatgtcaccatagga	7	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165380195	G	G	165380195	3	3	84	1	0	0	0	0	1	0	0	0	13876	594	21	4	641	4	RXRG	1	165380195	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4100545	165380195	83870426	124	86731											
ILDR2	387597	broad.mit.edu	37	chr1	166896340	166896340	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggctggatcaaactgagCcagctccttctcaacatagt	8	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166896340	T	T	166896340	3	4	84	1	0	0	0	0	1	0	0	0	7780	739	26	4	977	4	ILDR2	1	166896340	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1516145	166896340	82354281	125	86732											
GPA33	10223	broad.mit.edu	37	chr1	167024949	167024949	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgtttgtcagccctcccCccgcaggctgctcttacgag	11	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167024949	T	T	167024949	1	4	84	0	1	0	0	0	0	0	0	0	6651	638	22	4		4	GPA33	1	167024949	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	128609	167024949	82225672	126	86733											
DUSP27	92235	broad.mit.edu	37	chr1	167096069	167096069	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggagcgggagacagcagCggtgagcccggtgcagagga	20	8	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167096069	T	T	167096069	2	4	84	1	0	0	0	0	0	0	0	1	4864	767	27	4		4	DUSP27	1	167096069	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	71120	167096069	82154552	127	86734											
FMO1	2326	broad.mit.edu	37	chr1	171244600	171244600	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttgatgctgtcatggtctGcactggctttcttactaatc	8	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171244600	C	C	171244600	3	2	84	1	0	0	0	0	1	0	0	0	6012	1319	46	4	447	4	FMO1	1	171244600	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4148531	171244600	78006021	128	86735											
C1orf9	51430	broad.mit.edu	37	chr1	172557949	172557949	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatggagccgtcaacaccaGatactccaaaagagagtccc	8	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172557949	T	T	172557949	3	4	84	1	0	0	0	0	1	0	0	0	2089	942	33	3	1778	3	C1orf9	1	172557949	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1313349	172557949	76692672	129	86736											
TNR	7143	broad.mit.edu	37	chr1	175328925	175328925	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaggatagaaatgcagGgaatgatctcagaagttcca	12	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175328925	C	C	175328925	1	2	84	0	1	0	0	0	0	0	0	0	16461	1247	43	4		4	TNR	1	175328925	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2770976	175328925	73921696	130	86737											
TNR	7143	broad.mit.edu	37	chr1	175331925	175331925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacagtgttgggcaccaCtgagctgtctagtcgtccca	11	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175331925	A	A	175331925	3	1	84	1	0	0	0	0	1	0	0	0	16461	565	20	3	1388	3	TNR	1	175331925	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3000	175331925	73918696	131	86738											
PAPPA2	60676	broad.mit.edu	37	chr1	176668472	176668472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaacaaggagtcagtgCacctgggccccttagacact	11	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176668472	A	A	176668472	3	1	84	1	0	0	0	0	1	0	0	0	11527	710	25	3	3062	3	PAPPA2	1	176668472	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1336547	176668472	72582149	132	86739											
SEC16B	89866	broad.mit.edu	37	chr1	177909803	177909803	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtccctgtctccactgCgtctttctaaaaccagagga	8	14	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177909803	T	T	177909803	3	4	84	1	0	0	0	0	1	0	0	0	14100	768	27	4	1153	4	SEC16B	1	177909803	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1241331	177909803	71340818	133	86740											
ABL2	27	broad.mit.edu	37	chr1	179076925	179076925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacagggtttgtcccgggCacaccagcagctgctgaaga	14	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179076925	A	A	179076925	2	1	84	1	0	0	0	0	0	0	0	1	93	697	25	3		3	ABL2	1	179076925	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1167122	179076925	70173696	134	86741											
TDRD5	163589	broad.mit.edu	37	chr1	179620108	179620108	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaatccttaacattttttTgtgtgacacatcctcaaacg	6	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179620108	A	A	179620108	4	1	84	1	0	0	0	0	0	1	0	0	15855	1821	63	5	1949	5	TDRD5	1	179620108	Nonsense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	543183	179620108	69630513	135	86742											
CACNA1E	777	broad.mit.edu	37	chr1	181702695	181702695	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacgtggtgctgacggagcAggagccagaaggcagcagtg	18	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181702695	G	G	181702695	3	3	84	1	0	0	0	0	1	0	0	0	2568	188	7	5	3153	5	CACNA1E	1	181702695	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2082587	181702695	67547926	136	86743											
CACNA1E	777	broad.mit.edu	37	chr1	181706782	181706782	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcctgaccaactcggagCgcaacaaagtgggtacacag	11	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181706782	T	T	181706782	3	4	84	1	0	0	0	0	1	0	0	0	2568	768	27	4	3634	4	CACNA1E	1	181706782	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4087	181706782	67543839	137	86744											
LAMC1	3915	broad.mit.edu	37	chr1	183103994	183103994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaggcaacatttgaacaGtccaaatgggtctgtgatga	11	7	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183103994	T	T	183103994	1	4	84	0	1	0	0	0	0	0	0	0	8686	1044	36	3		3	LAMC1	1	183103994	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1397212	183103994	66146627	138	86745											
LAMC2	3918	broad.mit.edu	37	chr1	183177098	183177098	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaatggattccgctgcctCaactgcaatgacaacactga	9	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183177098	G	G	183177098	2	3	84	1	0	0	0	0	0	0	0	1	8687	813	29	4		4	LAMC2	1	183177098	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	73104	183177098	66073523	139	86746											
APOBEC4	403314	broad.mit.edu	37	chr1	183617945	183617945	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactgtcttctagctgcaaAcctaaacaaggaagagaaat	7	8	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183617945	G	G	183617945	1	3	84	0	1	0	0	0	0	0	0	0	798	57	2	5		5	APOBEC4	1	183617945	5'UTR	SNP	A	TCGA-17-Z055-01A-01W-0747-08	440847	183617945	65632676	140	86747											
C1orf21	81563	broad.mit.edu	37	chr1	184567578	184567578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaattcttcagaatgctgGatgaaaaaattgaaaaggta	9	3	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184567578	A	A	184567578	3	1	84	1	0	0	0	0	1	0	0	0	2049	1174	41	4	324	4	C1orf21	1	184567578	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	949633	184567578	64683043	141	86748											
HMCN1	83872	broad.mit.edu	37	chr1	185703787	185703787	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctcagcgccaaacttttTgctagttcagagattccaag	7	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185703787	C	C	185703787	1	2	84	0	1	0	0	0	0	0	0	0	7287	1827	63	5		5	HMCN1	1	185703787	5'UTR	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1136209	185703787	63546834	142	86749											
HMCN1	83872	broad.mit.edu	37	chr1	185956692	185956692	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggtaaatgatacatctAgttatatttcctgaagagca	7	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185956692	T	T	185956692	1	4	84	0	1	0	0	0	0	0	0	0	7287	435	15	5		5	HMCN1	1	185956692	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	252905	185956692	63293929	143	86750											
HMCN1	83872	broad.mit.edu	37	chr1	186031757	186031757	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctcagctctcagactttTggtgctccccccactcactg	9	16	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186031757	C	C	186031757	1	2	84	0	1	0	0	0	0	0	0	0	7287	1827	63	5		5	HMCN1	1	186031757	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	75065	186031757	63218864	144	86751											
HMCN1	83872	broad.mit.edu	37	chr1	186059944	186059944	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgatgtcagtgtccttctagGagaaaatgttgagctggtct	12	6	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186059944	A	A	186059944	3	1	84	1	0	0	0	0	1	0	0	0	7287	1174	41	4	10036	4	HMCN1	1	186059944	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	28187	186059944	63190677	145	86752											
HMCN1	83872	broad.mit.edu	37	chr1	186075949	186075949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttacattcattctagtGgatatttattttaataacaa	3	4	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186075949	T	T	186075949	1	4	84	0	1	0	0	0	0	0	0	0	7287	1363	47	2		2	HMCN1	1	186075949	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	16005	186075949	63174672	146	86753											
HMCN1	83872	broad.mit.edu	37	chr1	186107156	186107156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacttttctatcttaaccCctatgaaagaattacatttg	3	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186107156	T	T	186107156	1	4	84	0	1	0	0	0	0	0	0	0	7287	638	22	4		4	HMCN1	1	186107156	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	31207	186107156	63143465	147	86754											
HMCN1	83872	broad.mit.edu	37	chr1	186113345	186113345	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagccttggggaacatgCagcgaaagttgtgggaaagg	17	6	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186113345	A	A	186113345	4	1	84	1	0	0	0	0	0	1	0	0	7287	718	25	3	14323	3	HMCN1	1	186113345	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6189	186113345	63137276	148	86755											
HMCN1	83872	broad.mit.edu	37	chr1	186147665	186147665	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaggggacgggaaatcttGcgctggattggagaggctgc	17	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186147665	A	A	186147665	3	1	84	1	0	0	0	0	1	0	0	0	7287	1319	46	4	16475	4	HMCN1	1	186147665	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	34320	186147665	63102956	149	86756											
FAM5C	339479	broad.mit.edu	37	chr1	190067308	190067308	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gacgacgctgaccaggtgggGagagtttatttacacggtct	14	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190067308	C	C	190067308	3	2	84	1	0	0	0	0	1	0	0	0	5645	1174	41	4	163	4	FAM5C	1	190067308	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3919643	190067308	59183313	150	86757											
KCNT2	343450	broad.mit.edu	37	chr1	196434485	196434485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgattaaacattgcagaCtgtgtacgctgaatggctct	9	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196434485	A	A	196434485	3	1	84	1	0	0	0	0	1	0	0	0	8162	564	20	3	2915	3	KCNT2	1	196434485	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6367177	196434485	52816136	151	86758											
KCNT2	343450	broad.mit.edu	37	chr1	196448291	196448291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctatcagcgggaaactgCtaattaaaataacttacctt	6	8	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196448291	A	A	196448291	1	1	84	0	1	0	0	0	0	0	0	0	8162	812	28	3		3	KCNT2	1	196448291	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	13806	196448291	52802330	152	86759											
PPP1R12B	4660	broad.mit.edu	37	chr1	202527939	202527939	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaaataatacaaatcagtCtcttgctaatgctgttttct	6	7	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202527939	G	G	202527939	1	3	84	0	1	0	0	0	0	0	0	0	12456	928	32	4		4	PPP1R12B	1	202527939	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6079648	202527939	46722682	153	86760											
PPFIA4	8497	broad.mit.edu	37	chr1	203029443	203029443	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggacacagagatccagcgGgagatcggcatcagcaatgc	13	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203029443	T	T	203029443	2	4	84	1	0	0	0	0	0	0	0	1	12408	1219	43	2		2	PPFIA4	1	203029443	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	501504	203029443	46221178	154	86761											
PLEKHA6	22874	broad.mit.edu	37	chr1	204234329	204234329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagggccaccacacatgCtccgagaggacactccctgg	10	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204234329	A	A	204234329	1	1	84	0	1	0	0	0	0	0	0	0	12155	812	28	3		3	PLEKHA6	1	204234329	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1204886	204234329	45016292	155	86762											
CNTN2	6900	broad.mit.edu	37	chr1	205034237	205034237	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaccaaaatcactctagcCccctcaagtgccgacatcaa	5	16	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205034237	A	A	205034237	2	1	84	1	0	0	0	0	0	0	0	1	3673	610	22	2		2	CNTN2	1	205034237	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	799908	205034237	44216384	156	86763											
SLC41A1	254428	broad.mit.edu	37	chr1	205779243	205779243	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagccacggtcccaaagccTgccaggaggaatggaaacag	13	12	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205779243	G	G	205779243	2	3	84	1	0	0	0	0	0	0	0	1	14743	1567	55	5		5	SLC41A1	1	205779243	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	745006	205779243	43471378	157	86764											
C4BPA	722	broad.mit.edu	37	chr1	207300151	207300151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacactattgtgtttaagtGccaaaaaggttttgttctca	8	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207300151	T	T	207300151	3	4	84	1	0	0	0	0	1	0	0	0	2272	1319	46	3	822	3	C4BPA	1	207300151	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1520908	207300151	41950470	158	86765											
CR2	1380	broad.mit.edu	37	chr1	207642565	207642565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgcttggaccaaaatgCcagtatgtgaaggtaggcta	13	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207642565	A	A	207642565	3	1	84	1	0	0	0	0	1	0	0	0	3874	739	26	3	823	3	CR2	1	207642565	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	342414	207642565	41608056	159	86766											
PLXNA2	5362	broad.mit.edu	37	chr1	208206529	208206529	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggattatgggcatgagccaCcaggtctggctgtacctgga	15	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208206529	T	T	208206529	1	4	84	0	1	0	0	0	0	0	0	0	12215	522	18	4		4	PLXNA2	1	208206529	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	563964	208206529	41044092	160	86767											
LAMB3	3914	broad.mit.edu	37	chr1	209811358	209811358	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatagaaactgtcatccAgagactgtccacttccccag	6	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209811358	G	G	209811358	1	3	84	0	1	0	0	0	0	0	0	0	8684	203	7	5		5	LAMB3	1	209811358	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1604829	209811358	39439263	161	86768											
SYT14	255928	broad.mit.edu	37	chr1	210334400	210334400	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcatgatgaatagaataaGcaagcagttaccatcaaagg	9	6	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	210334400	C	C	210334400	1	2	84	0	1	0	0	0	0	0	0	0	15589	986	34	4		4	SYT14	1	210334400	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	523042	210334400	38916221	162	86769											
KCNH1	3756	broad.mit.edu	37	chr1	211034583	211034583	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcttggataatgccttgTatatggggcttcagattctt	9	7	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211034583	G	G	211034583	1	3	84	0	1	0	0	0	0	0	0	0	8101	1653	57	5		5	KCNH1	1	211034583	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	700183	211034583	38216038	163	86770											
KCNH1	3756	broad.mit.edu	37	chr1	211280669	211280669	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaatccatcattgctgtAcacaataggccagtccacta	6	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211280669	G	G	211280669	3	3	84	1	0	0	0	0	1	0	0	0	8101	391	14	5	2879	5	KCNH1	1	211280669	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	246086	211280669	37969952	164	86771											
PROX1	5629	broad.mit.edu	37	chr1	214171089	214171089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaccacaatttccacaCcgccaaccagcgcctgcagt	7	16	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214171089	A	A	214171089	3	1	84	1	0	0	0	0	1	0	0	0	12666	507	18	3	1213	3	PROX1	1	214171089	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2890420	214171089	35079532	165	86772											
CENPF	1063	broad.mit.edu	37	chr1	214830567	214830567	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggttatcatctggccaaaAtaaagcttcaggcaagaggc	11	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214830567	G	G	214830567	3	3	84	1	0	0	0	0	1	0	0	0	3261	101	4	5	8843	5	CENPF	1	214830567	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	659478	214830567	34420054	166	86773											
KCNK2	3776	broad.mit.edu	37	chr1	215256828	215256828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgcacgctctcctgcccCagccttttctgggaggactg	12	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215256828	A	A	215256828	1	1	84	0	1	0	0	0	0	0	0	0	8136	609	21	2		2	KCNK2	1	215256828	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	426261	215256828	33993793	167	86774											
USH2A	7399	broad.mit.edu	37	chr1	215812588	215812588	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaaagaaggctagacaAaaggaagaactggtaaatga	12	3	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215812588	T	T	215812588	1	4	84	0	1	0	0	0	0	0	0	0	17162	29	1	5		5	USH2A	1	215812588	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	555760	215812588	33438033	168	86775											
USH2A	7399	broad.mit.edu	37	chr1	215847652	215847652	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaattttggaggttccatcCctgagggtgctgaggggctg	16	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215847652	T	T	215847652	3	4	84	1	0	0	0	0	1	0	0	0	17162	623	22	4	2047	4	USH2A	1	215847652	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	35064	215847652	33402969	169	86776											
USH2A	7399	broad.mit.edu	37	chr1	216019177	216019177	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggactcacccccatcgcaaGtggttgcatgaagtcctgca	10	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216019177	C	C	216019177	3	2	84	1	0	0	0	0	1	0	0	0	17162	1029	36	4	6676	4	USH2A	1	216019177	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	171525	216019177	33231444	170	86777											
USH2A	7399	broad.mit.edu	37	chr1	216262182	216262182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccttcatggatgaaaaacTggttgccagacttcatcctt	8	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216262182	C	C	216262182	1	2	84	0	1	0	0	0	0	0	0	0	17162	1595	55	5		5	USH2A	1	216262182	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	243005	216262182	32988439	171	86778											
USH2A	7399	broad.mit.edu	37	chr1	216270503	216270503	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgattgccaggtgatgcTgcaaagacaatcaaaccttc	8	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216270503	G	G	216270503	2	3	84	1	0	0	0	0	0	0	0	1	17162	1567	55	5		5	USH2A	1	216270503	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	8321	216270503	32980118	172	86779											
USH2A	7399	broad.mit.edu	37	chr1	216462592	216462592	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctggcagacagagtaatCctttaccttaaatactcaga	6	9	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216462592	A	A	216462592	1	1	84	0	1	0	0	0	0	0	0	0	17162	870	30	3		3	USH2A	1	216462592	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	192089	216462592	32788029	173	86780											
USH2A	7399	broad.mit.edu	37	chr1	216495249	216495249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccttcagtgaagctctcCtgggagcagaggcatctata	11	10	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216495249	A	A	216495249	3	1	84	1	0	0	0	0	1	0	0	0	17162	680	24	2	14258	2	USH2A	1	216495249	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	32657	216495249	32755372	174	86781											
ESRRG	2104	broad.mit.edu	37	chr1	216850597	216850597	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtcatcatacagtttcCtgacaggcccactacctccc	6	16	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216850597	T	T	216850597	3	4	84	1	0	0	0	0	1	0	0	0	5304	681	24	4	1107	4	ESRRG	1	216850597	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	355348	216850597	32400024	175	86782											
ESRRG	2104	broad.mit.edu	37	chr1	216850620	216850620	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggcccactacctcccagGataggagcagaagggtagag	13	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216850620	T	T	216850620	2	4	84	1	0	0	0	0	0	0	0	1	5304	1164	41	3		3	ESRRG	1	216850620	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	23	216850620	32400001	176	86783											
GPATCH2	55105	broad.mit.edu	37	chr1	217665055	217665055	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacagaacaatttttcttgTgtcctctttcagctcgatta	5	10	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217665055	G	G	217665055	3	3	84	1	0	0	0	0	1	0	0	0	6656	1696	59	5	354	5	GPATCH2	1	217665055	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	814435	217665055	31585566	177	86784											
GPATCH2	55105	broad.mit.edu	37	chr1	217671776	217671776	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagttagagggaacctaaCtaaaagcacgtgctctcaca	10	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217671776	T	T	217671776	1	4	84	0	1	0	0	0	0	0	0	0	6656	580	20	4		4	GPATCH2	1	217671776	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6721	217671776	31578845	178	86785											
TGFB2	7042	broad.mit.edu	37	chr1	218614643	218614643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccattctctactacattgGcaaaacacccaagattgaac	4	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218614643	T	T	218614643	3	4	84	1	0	0	0	0	1	0	0	0	15941	1203	42	3	1298	3	TGFB2	1	218614643	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	942867	218614643	30635978	179	86786											
BPNT1	10380	broad.mit.edu	37	chr1	220236273	220236273	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaactccccagattgtcctCcccaacacagcatctggtcc	5	17	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220236273	A	A	220236273	2	1	84	1	0	0	0	0	0	0	0	1	1503	842	30	3		3	BPNT1	1	220236273	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1621630	220236273	29014348	180	86787											
MARK1	4139	broad.mit.edu	37	chr1	220808715	220808715	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtggtttttcttcttaTagtttgaaggtggtgaatcg	11	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220808715	C	C	220808715	1	2	84	0	1	0	0	0	0	0	0	0	9404	1421	49	5		5	MARK1	1	220808715	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	572442	220808715	28441906	181	86788											
HLX	3142	broad.mit.edu	37	chr1	221055725	221055725	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccagcgcacagcgccctCgggcgggcagcagcgcacgg	16	17	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221055725	T	T	221055725	1	4	84	0	1	0	0	0	0	0	0	0	7283	899	31	4		4	HLX	1	221055725	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	247010	221055725	28194896	182	86789											
C1orf95	375057	broad.mit.edu	37	chr1	226784445	226784445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggccagcaatgagcaCacagacccctttgtctccca	7	18	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226784445	A	A	226784445	1	1	84	0	1	0	0	0	0	0	0	0	2094	493	17	3		3	C1orf95	1	226784445	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5728720	226784445	22466176	183	86790											
WNT3A	89780	broad.mit.edu	37	chr1	228210455	228210456	+	Missense_Mutation	DNP	CC	AT	AT													ggcctggtccccaagcagctCcgcttctgcaggaactacgt							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	228210456	AT	AT	228210455	3	1	84	1	0	0	0	0	1	0	0	0	17516	842	30	3	165	3	WNT3A	1	228210455	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	1426010	228210455	21040166	184	86791											
C1orf35	79169	broad.mit.edu	37	chr1	228289028	228289028	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccaagaggcagatatggAccagggcatacctctcagga	11	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228289028	C	C	228289028	1	2	84	0	1	0	0	0	0	0	0	0	2060	290	10	5		5	C1orf35	1	228289028	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	78573	228289028	20961593	185	86792											
ACTA1	58	broad.mit.edu	37	chr1	229568617	229568617	+	Frame_Shift_Del	DEL	A	-	-													aatctttctgacccataccgAccatgacgccctgcagagcc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	229568617	-	-	229568617	7	5	84	1	0	1	0	1	0	0	0	0	191	275	10	0	1013	0	ACTA1	1	229568617	Frame_Shift_Del	DEL	A	TCGA-17-Z055-01A-01W-0747-08	1279589	229568617	19682004	186	86793											
PGBD5	79605	broad.mit.edu	37	chr1	230459372	230459372	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagaaatgaaatacctgagGacagagggaataagaacggc	13	5	0	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230459372	A	A	230459372	1	1	84	0	1	0	0	0	0	0	0	0	11879	1189	41	4		4	PGBD5	1	230459372	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	890755	230459372	18791249	187	86794											
CAPN9	10753	broad.mit.edu	37	chr1	230916216	230916216	+	Intron	DEL	G	-	-													agccaagaggaacttccctaGgaaacccctccctttcttgc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	230916216	-	-	230916216	6	5	84	0	1	1	0	1	0	0	0	0	2658	1015	35	0		0	CAPN9	1	230916216	Intron	DEL	G	TCGA-17-Z055-01A-01W-0747-08	456844	230916216	18334405	188	86795											
KCNK1	3775	broad.mit.edu	37	chr1	233802359	233802359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttatggccacaccgtgcCcttgtcagatggaggtaagg	14	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233802359	A	A	233802359	3	1	84	1	0	0	0	0	1	0	0	0	8128	623	22	2	380	2	KCNK1	1	233802359	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2886143	233802359	15448262	189	86796											
KCNK1	3775	broad.mit.edu	37	chr1	233802735	233802735	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctataagattgggatcacGtgtgagtattacagctccct	9	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233802735	A	A	233802735	2	1	84	1	0	0	0	0	0	0	0	1	8128	1159	40	4		4	KCNK1	1	233802735	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	376	233802735	15447886	190	86797											
TARBP1	6894	broad.mit.edu	37	chr1	234594899	234594899	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaatggcagtatcacaggtCtgctatgttaactcatttct	7	9	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234594899	G	G	234594899	1	3	84	0	1	0	0	0	0	0	0	0	15674	928	32	4		4	TARBP1	1	234594899	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	792164	234594899	14655722	191	86798											
TARBP1	6894	broad.mit.edu	37	chr1	234603242	234603242	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaggaaggggacagggtgtCattacctcagaaaattctgg	13	7	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234603242	T	T	234603242	1	4	84	0	1	0	0	0	0	0	0	0	15674	841	29	4		4	TARBP1	1	234603242	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	8343	234603242	14647379	192	86799											
IRF2BP2	359948	broad.mit.edu	37	chr1	234742946	234742946	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggttgcaatttccccttgCataaaggcccaggggacatt	10	10	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234742946	G	G	234742946	3	3	84	1	0	0	0	0	1	0	0	0	7900	710	25	4	66	4	IRF2BP2	1	234742946	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	139704	234742946	14507675	193	86800											
GNG4	2786	broad.mit.edu	37	chr1	235747043	235747043	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacgcatgcatgcttaccttGaccctgtccatacaggcttc	8	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235747043	C	C	235747043	2	2	84	1	0	0	0	0	0	0	0	1	6593	1277	45	4		4	GNG4	1	235747043	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1004097	235747043	13503578	194	86801											
LYST	1130	broad.mit.edu	37	chr1	235878489	235878489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgactttttaggcagttaTtaaattcttaccttgatagg	7	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235878489	A	A	235878489	1	1	84	0	1	0	0	0	0	0	0	0	9216	1508	52	5		5	LYST	1	235878489	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	131446	235878489	13372132	195	86802											
LYST	1130	broad.mit.edu	37	chr1	235887558	235887559	+	Intron	DNP	CA	AT	AT													taattttagattttaaaaagCatcaaaataaaacagaaaat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	235887559	AT	AT	235887558	1	1	84	0	1	0	0	0	0	0	0	0	9216	725	25	3		3	LYST	1	235887558	Intron	DNP	CA	TCGA-17-Z055-01A-01W-0747-08	9069	235887558	13363063	196	86803											
LYST	1130	broad.mit.edu	37	chr1	235922285	235922285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtacctgtgagcacttgCagttcggttgtaatttggct	11	7	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235922285	A	A	235922285	3	1	84	1	0	0	0	0	1	0	0	0	9216	710	25	3	4661	3	LYST	1	235922285	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	34727	235922285	13328336	197	86804											
ACTN2	88	broad.mit.edu	37	chr1	236891006	236891006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggccttggactctgtgccCtcatccaccgacaccggcct	9	17	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236891006	A	A	236891006	3	1	84	1	0	0	0	0	1	0	0	0	205	681	24	2	587	2	ACTN2	1	236891006	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	968721	236891006	12359615	198	86805											
MTR	4548	broad.mit.edu	37	chr1	237016014	237016014	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaagtgtggcatgcagGctaagtccggcctgctgcca	12	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237016014	T	T	237016014	1	4	84	0	1	0	0	0	0	0	0	0	10052	1218	42	3		3	MTR	1	237016014	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	125008	237016014	12234607	199	86806											
RYR2	6262	broad.mit.edu	37	chr1	237660032	237660032	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcttctcctatggatttgAtggccttcatctctggtcag	8	11	5	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237660032	T	T	237660032	3	4	84	1	0	0	0	0	1	0	0	0	13880	333	12	5	2261	5	RYR2	1	237660032	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	644018	237660032	11590589	200	86807											
RYR2	6262	broad.mit.edu	37	chr1	237972129	237972129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactagagcactcgccgcCcatgtagatgtcacgtgtca	9	14	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237972129	A	A	237972129	1	1	84	0	1	0	0	0	0	0	0	0	13880	638	22	2		2	RYR2	1	237972129	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	312097	237972129	11278492	201	86808											
ZP4	57829	broad.mit.edu	37	chr1	238045748	238045748	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacatttggtctgggcaacTcttctgtttcttgacagcca	8	11	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238045748	A	A	238045748	3	1	84	1	0	0	0	0	1	0	0	0	18347	1551	54	5	29	5	ZP4	1	238045748	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	73619	238045748	11204873	202	86809											
FMN2	56776	broad.mit.edu	37	chr1	240307063	240307063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctccctgatggtctgaaGgatagtggaagttacatctc	10	9	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240307063	T	T	240307063	1	4	84	0	1	0	0	0	0	0	0	0	6008	1015	35	2		2	FMN2	1	240307063	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2261315	240307063	8943558	203	86810											
FMN2	56776	broad.mit.edu	37	chr1	240307783	240307783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaacaccccatgccagcCtagcatgaatgccatctgtt	8	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240307783	A	A	240307783	1	1	84	0	1	0	0	0	0	0	0	0	6008	696	24	2		2	FMN2	1	240307783	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	720	240307783	8942838	204	86811											
RGS7	6000	broad.mit.edu	37	chr1	240966289	240966289	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatcagtttgtaaatgTgctcctaaaaagaaataatg	6	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240966289	A	A	240966289	3	1	84	1	0	0	0	0	1	0	0	0	13419	1696	59	5	201	5	RGS7	1	240966289	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	658506	240966289	8284332	205	86812											
WDR64	128025	broad.mit.edu	37	chr1	241946704	241946704	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaggccaagatggcatcatActgtgaattcagtactgtga	11	7	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241946704	T	T	241946704	1	4	84	0	1	0	0	0	0	0	0	0	17442	406	14	5		5	WDR64	1	241946704	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	980415	241946704	7303917	206	86813											
EXO1	9156	broad.mit.edu	37	chr1	242020668	242020668	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcccggtctcagggggtaGattgcctcgtggctccctat	13	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242020668	T	T	242020668	3	4	84	1	0	0	0	0	1	0	0	0	5342	942	33	3	441	3	EXO1	1	242020668	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	73964	242020668	7229953	207	86814											
PLD5	200150	broad.mit.edu	37	chr1	242451774	242451774	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccttggaaaagtgataagtGaaatggtgcattttctgaat	11	4	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242451774	T	T	242451774	3	4	84	1	0	0	0	0	1	0	0	0	12144	1290	45	3	1257	3	PLD5	1	242451774	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	431106	242451774	6798847	208	86815											
SDCCAG8	10806	broad.mit.edu	37	chr1	243431053	243431053	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaatcttggatccttggcGatccttagagccactcaata	7	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243431053	T	T	243431053	1	4	84	0	1	0	0	0	0	0	0	0	14072	1073	37	3		3	SDCCAG8	1	243431053	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	979279	243431053	5819568	209	86816											
C1orf101	257044	broad.mit.edu	37	chr1	244724073	244724073	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaactaccacagaactgaAaaacatcctaagtctatcgg	6	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244724073	T	T	244724073	3	4	84	1	0	0	0	0	1	0	0	0	1996	14	1	5	1171	5	C1orf101	1	244724073	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1293020	244724073	4526548	210	86817											
TFB2M	64216	broad.mit.edu	37	chr1	246729385	246729385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcaaaagcgaccagcgCccgccaaggcggagagcctc	12	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246729385	A	A	246729385	3	1	84	1	0	0	0	0	1	0	0	0	15917	739	26	3	1166	3	TFB2M	1	246729385	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2005312	246729385	2521236	211	86818											
SCCPDH	51097	broad.mit.edu	37	chr1	246921707	246921707	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatctagtctaagtatattGttgttgggttggctattaat	9	3	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	246921707	C	C	246921707	1	2	84	0	1	0	0	0	0	0	0	0	13997	1392	48	4		4	SCCPDH	1	246921707	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	192322	246921707	2328914	212	86819											
SCCPDH	51097	broad.mit.edu	37	chr1	246930470	246930470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagaggagctgagtgcaCtgttttctcttgttattgtt	12	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246930470	A	A	246930470	1	1	84	0	1	0	0	0	0	0	0	0	13997	580	20	3		3	SCCPDH	1	246930470	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	8763	246930470	2320151	213	86820											
NLRP3	114548	broad.mit.edu	37	chr1	247599221	247599221	+	Intron	DEL	G	-	-													acgggtgcttccttgtccatGgtggagcgtgggtgagagac							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247599221	-	-	247599221	6	5	84	0	1	1	0	1	0	0	0	0	10573	1363	47	0		0	NLRP3	1	247599221	Intron	DEL	G	TCGA-17-Z055-01A-01W-0747-08	668751	247599221	1651400	214	86821											
OR2C3	81472	broad.mit.edu	37	chr1	247695078	247695078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagagacaccacagccaCgtgggaagaacaggtgttga	12	9	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247695078	A	A	247695078	3	1	84	1	0	0	0	0	1	0	0	0	11087	536	19	3	230	3	OR2C3	1	247695078	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	95857	247695078	1555543	215	86822											
OR13G1	441933	broad.mit.edu	37	chr1	247835758	247835758	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaatatcagcaacatacaCcatcacctcattgattctta	4	11	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247835758	G	G	247835758	3	3	84	1	0	0	0	0	1	0	0	0	11036	507	18	4	341	4	OR13G1	1	247835758	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	140680	247835758	1414863	216	86823											
OR2L13	284521	broad.mit.edu	37	chr1	248166397	248166397	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatttctgtcttaacttactCgtgtctcccttccggatgga	7	11	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248166397	A	A	248166397	1	1	84	0	1	0	0	0	0	0	0	0	11100	899	31	3		3	OR2L13	1	248166397	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	330639	248166397	1084224	217	86824											
OR2L2	26246	broad.mit.edu	37	chr1	248202223	248202223	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtattgcatgttcctatggCcgggttctccttgctgtcta	11	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248202223	A	A	248202223	2	1	84	1	0	0	0	0	0	0	0	1	11101	726	26	3		3	OR2L2	1	248202223	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	35826	248202223	1048398	218	86825											
OR14C36	127066	broad.mit.edu	37	chr1	248512941	248512941	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttaaccctattatttacAgtcttagaaataagcaaata	3	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248512941	T	T	248512941	3	4	84	1	0	0	0	0	1	0	0	0	11040	188	7	5	867	5	OR14C36	1	248512941	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	310718	248512941	737680	219	86826											
OR2T1	26696	broad.mit.edu	37	chr1	248569848	248569848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctctgagataccctgtcCtcatgagccgccgggtctgt	10	15	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248569848	A	A	248569848	3	1	84	1	0	0	0	0	1	0	0	0	11110	681	24	2	555	2	OR2T1	1	248569848	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	56907	248569848	680773	220	86827											
OR2T2	401992	broad.mit.edu	37	chr1	248616140	248616141	+	Missense_Mutation	DNP	CC	AA	AA													cagaactccactaacttcgtCctcacaggcctcatcaccca							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	248616141	AA	AA	248616140	3	1	84	1	0	0	0	0	1	0	0	0	11114	842	30	3	44	3	OR2T2	1	248616140	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	46292	248616140	634481	221	86828											
SNTG2	54221	broad.mit.edu	37	chr2	1093880	1093880	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttttctaaaatgttttaaAgcgcagaactgttacactcc	6	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1093880	T	T	1093880	5	4	84	1	0	0	0	0	0	0	1	0	14989	86	3	5	219	5	SNTG2	2	1093880	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08		1093880	242105493	222	86829											
MYT1L	23040	broad.mit.edu	37	chr2	1891293	1891293	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgctctccttgcactgaGggtacttgggtttgggactt	12	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1891293	C	C	1891293	3	2	84	1	0	0	0	0	1	0	0	0	10201	1000	35	4	987	4	MYT1L	2	1891293	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	797413	1891293	241308080	223	86830											
KIDINS220	57498	broad.mit.edu	37	chr2	8887977	8887977	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatgctatctatgtttaTtattaaattaatatttgcgt	4	4	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8887977	C	C	8887977	1	2	84	0	1	0	0	0	0	0	0	0	8341	1508	52	5		5	KIDINS220	2	8887977	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	6996684	8887977	234311396	224	86831											
ROCK2	9475	broad.mit.edu	37	chr2	11376102	11376102	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaagctggaaaacaaaaGgaaaaggaaaaatttttaaa	7	2	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11376102	C	C	11376102	1	2	84	0	1	0	0	0	0	0	0	0	13629	1015	35	4		4	ROCK2	2	11376102	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2488125	11376102	231823271	225	86832											
GREB1	9687	broad.mit.edu	37	chr2	11777829	11777829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtagtggcctgacaccccCcttcccgtgcaggtgtctga	11	15	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11777829	A	A	11777829	1	1	84	0	1	0	0	0	0	0	0	0	6826	638	22	2		2	GREB1	2	11777829	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	401727	11777829	231421544	226	86833											
LPIN1	23175	broad.mit.edu	37	chr2	11945128	11945128	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttttttttttttttatgAggcatgaatggtgcaatgaa	9	2	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11945128	G	G	11945128	1	3	84	0	1	0	0	0	0	0	0	0	9005	319	11	5		5	LPIN1	2	11945128	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	167299	11945128	231254245	227	86834											
SMC6	79677	broad.mit.edu	37	chr2	17907648	17907648	+	Intron	DEL	C	-	-													ggtttatatttactttggtgCcacttactttgtatttgtct							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17907648	-	-	17907648	6	5	84	0	1	1	0	1	0	0	0	0	14901	754	26	0		0	SMC6	2	17907648	Intron	DEL	C	TCGA-17-Z055-01A-01W-0747-08	5962520	17907648	225291725	228	86835											
SMC6	79677	broad.mit.edu	37	chr2	17923016	17923016	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctattaataaaaaacaatgGgagaaaatggtcaatctaat	6	4	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17923016	A	A	17923016	1	1	84	0	1	0	0	0	0	0	0	0	14901	1247	43	4		4	SMC6	2	17923016	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	15368	17923016	225276357	229	86836											
APOB	338	broad.mit.edu	37	chr2	21241818	21241818	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcatgaattctgaacCtgagactgcgagcagagatg	10	10	3	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21241818	T	T	21241818	1	4	84	0	1	0	0	0	0	0	0	0	787	696	24	4		4	APOB	2	21241818	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3318802	21241818	221957555	230	86837											
APOB	338	broad.mit.edu	37	chr2	21263909	21263909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctttcagggtgcactggCtggtcttcaggatgaagctg	13	10	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21263909	A	A	21263909	3	1	84	1	0	0	0	0	1	0	0	0	787	797	28	3	13511	3	APOB	2	21263909	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	22091	21263909	221935464	231	86838											
PFN4	375189	broad.mit.edu	37	chr2	24342459	24342459	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacttacccaggctctctgTggcttccacacagatgctag	8	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24342459	C	C	24342459	3	2	84	1	0	0	0	0	1	0	0	0	11865	1696	59	5	48	5	PFN4	2	24342459	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3078550	24342459	218856914	232	86839											
KIF3C	3797	broad.mit.edu	37	chr2	26152068	26152068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccagtcaccccttgccCttcctgcccttcgggtacca	6	20	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26152068	A	A	26152068	1	1	84	0	1	0	0	0	0	0	0	0	8372	696	24	2		2	KIF3C	2	26152068	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1809609	26152068	217047305	233	86840											
EPT1	85465	broad.mit.edu	37	chr2	26609319	26609319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtcttagtggtaaacctagGagtagcctcttacgttgaga	11	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26609319	T	T	26609319	3	4	84	1	0	0	0	0	1	0	0	0	5241	1174	41	3	1044	3	EPT1	2	26609319	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	457251	26609319	216590054	234	86841											
DPYSL5	56896	broad.mit.edu	37	chr2	27163050	27163050	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaggagtggtatgtttcCtagagccccgccccgatctg	13	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27163050	T	T	27163050	1	4	84	0	1	0	0	0	0	0	0	0	4790	696	24	4		4	DPYSL5	2	27163050	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	553731	27163050	216036323	235	86842											
CAD	790	broad.mit.edu	37	chr2	27455904	27455904	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtacccttcccctccctcTtgcagatgggatataagacc	7	14	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27455904	C	C	27455904	1	2	84	0	1	0	0	0	0	0	0	0	2591	1624	56	5		5	CAD	2	27455904	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	292854	27455904	215743469	236	86843											
PLB1	151056	broad.mit.edu	37	chr2	28785789	28785789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttatccaaggtgtcttGgtggtaaaaactgacttttt	8	6	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28785789	T	T	28785789	1	4	84	0	1	0	0	0	0	0	0	0	12119	1363	47	2		2	PLB1	2	28785789	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1329885	28785789	214413584	237	86844											
PLB1	151056	broad.mit.edu	37	chr2	28828767	28828767	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccagactgcatccacccAaatcagaaattccactccca	4	18	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28828767	G	G	28828767	2	3	84	1	0	0	0	0	0	0	0	1	12119	117	5	5		5	PLB1	2	28828767	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	42978	28828767	214370606	238	86845											
GALNT14	79623	broad.mit.edu	37	chr2	31215860	31215860	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccacaggtcgtcccagTcagcgtccgaaggctgcgtg	14	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31215860	A	A	31215860	3	1	84	1	0	0	0	0	1	0	0	0	6274	1667	58	5	1571	5	GALNT14	2	31215860	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2387093	31215860	211983513	239	86846											
EHD3	30845	broad.mit.edu	37	chr2	31484531	31484531	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctatggccggatcgagcgGgagcaccagatctcacctgg	13	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31484531	T	T	31484531	2	4	84	1	0	0	0	0	0	0	0	1	5019	1219	43	2		2	EHD3	2	31484531	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	268671	31484531	211714842	240	86847											
XDH	7498	broad.mit.edu	37	chr2	31602819	31602819	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccagggaagaaggtgtggtCcatctggacagttctcctgg	15	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31602819	G	G	31602819	3	3	84	1	0	0	0	0	1	0	0	0	17553	855	30	4	2941	4	XDH	2	31602819	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	118288	31602819	211596554	241	86848											
BIRC6	57448	broad.mit.edu	37	chr2	32836671	32836671	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagtaagcctctctaacagGagccttgttgctttaagagt	10	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32836671	T	T	32836671	1	4	84	0	1	0	0	0	0	0	0	0	1444	1189	41	3		3	BIRC6	2	32836671	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1233852	32836671	210362702	242	86849											
RASGRP3	25780	broad.mit.edu	37	chr2	33740241	33740241	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaagcagcaacattagAtgaactgctgtgcacttgca	11	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33740241	T	T	33740241	3	4	84	1	0	0	0	0	1	0	0	0	13184	333	12	5	40	5	RASGRP3	2	33740241	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	903570	33740241	209459132	243	86850											
RASGRP3	25780	broad.mit.edu	37	chr2	33749025	33749025	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatcgattgctttatttaAtggaatctctaagtgggtcc	9	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33749025	G	G	33749025	3	3	84	1	0	0	0	0	1	0	0	0	13184	101	4	5	618	5	RASGRP3	2	33749025	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	8784	33749025	209450348	244	86851											
LRPPRC	10128	broad.mit.edu	37	chr2	44145421	44145421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgtcaaacggaacttcctGgttaccctctctaaggattt	7	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44145421	T	T	44145421	3	4	84	1	0	0	0	0	1	0	0	0	9052	1357	47	2	1215	2	LRPPRC	2	44145421	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	10396396	44145421	199053952	245	86852											
PRKCE	5581	broad.mit.edu	37	chr2	46069963	46069963	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggatggtgctacctatggGgtatgcatcagtcctcccag	13	10	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46069963	A	A	46069963	1	1	84	0	1	0	0	0	0	0	0	0	12617	1247	43	4		4	PRKCE	2	46069963	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1924542	46069963	197129410	246	86853											
ATP6V1E2	90423	broad.mit.edu	37	chr2	46739635	46739635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgattcctcatggtggaCatcaggattttcttctgctg	10	10	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46739635	T	T	46739635	3	4	84	1	0	0	0	0	1	0	0	0	1188	478	17	4	468	4	ATP6V1E2	2	46739635	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	669672	46739635	196459738	247	86854											
TTC7A	57217	broad.mit.edu	37	chr2	47233735	47233735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgcggatggctggggtGggaggacccctggtgggtaa	22	6	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47233735	T	T	47233735	1	4	84	0	1	0	0	0	0	0	0	0	16838	1363	47	2		2	TTC7A	2	47233735	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	494100	47233735	195965638	248	86855											
FBXO11	80204	broad.mit.edu	37	chr2	48060016	48060016	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatttgtcatcagggtTaaactgaaaagtaaaaattt	8	4	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48060016	A	A	48060016	3	1	84	1	0	0	0	0	1	0	0	0	5784	1754	61	5	1888	5	FBXO11	2	48060016	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	826281	48060016	195139357	249	86856											
NRXN1	9378	broad.mit.edu	37	chr2	50733693	50733693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccacgccgaactacacGcactgtgtgccactcgttat	7	14	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50733693	T	T	50733693	3	4	84	1	0	0	0	0	1	0	0	0	10760	1087	38	3	2393	3	NRXN1	2	50733693	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2673677	50733693	192465680	250	86857											
NRXN1	9378	broad.mit.edu	37	chr2	50765408	50765408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctctctcacaggacctgCcaagatagcctgttccggaa	8	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50765408	A	A	50765408	3	1	84	1	0	0	0	0	1	0	0	0	10760	739	26	3	2716	3	NRXN1	2	50765408	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	31715	50765408	192433965	251	86858											
NRXN1	9378	broad.mit.edu	37	chr2	50847160	50847160	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatggcaacgatatttacCtctttgagacagcccataaa	7	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50847160	T	T	50847160	2	4	84	1	0	0	0	0	0	0	0	1	10760	695	24	4		4	NRXN1	2	50847160	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	81752	50847160	192352213	252	86859											
TSPYL6	388951	broad.mit.edu	37	chr2	54482526	54482526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggtggtggcggaaagCagtgacccagaagcccggga	18	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54482526	A	A	54482526	3	1	84	1	0	0	0	0	1	0	0	0	16788	710	25	3	473	3	TSPYL6	2	54482526	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3635366	54482526	188716847	253	86860											
PNPT1	87178	broad.mit.edu	37	chr2	55920933	55920933	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggccggagccggaggcacGagcagcagtacctgcaggcc	18	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55920933	C	C	55920933	3	2	84	1	0	0	0	0	1	0	0	0	12268	1059	37	4	2437	4	PNPT1	2	55920933	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1438407	55920933	187278440	254	86861											
VRK2	7444	broad.mit.edu	37	chr2	58276167	58276167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaccgtgattacttagtGgtattttaagaatggaaata	9	3	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58276167	A	A	58276167	1	1	84	0	1	0	0	0	0	0	0	0	17347	1363	47	4		4	VRK2	2	58276167	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2355234	58276167	184923206	255	86862											
VRK2	7444	broad.mit.edu	37	chr2	58315576	58315576	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctgcaattaggtatcCgaatggtaagaattacttat	8	7	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58315576	A	A	58315576	2	1	84	1	0	0	0	0	0	0	0	1	17347	644	23	1		1	VRK2	2	58315576	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	39409	58315576	184883797	256	86863											
CNRIP1	25927	broad.mit.edu	37	chr2	68544274	68544274	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccatactcctatacccGcaagcaagccttaccggcat	7	16	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68544274	A	A	68544274	1	1	84	0	1	0	0	0	0	0	0	0	3665	1102	38	4		4	CNRIP1	2	68544274	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	10228698	68544274	174655099	257	86864											
PLEK	5341	broad.mit.edu	37	chr2	68620169	68620169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgggatattgttatcctGgagttagtatttcattttct	10	6	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68620169	T	T	68620169	1	4	84	0	1	0	0	0	0	0	0	0	12148	1363	47	2		2	PLEK	2	68620169	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	75895	68620169	174579204	258	86865											
DYSF	8291	broad.mit.edu	37	chr2	71744062	71744062	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggaagagctattgggttGgccgtgtgggccacatgttc	17	7	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71744062	C	C	71744062	1	2	84	0	1	0	0	0	0	0	0	0	4899	1363	47	4		4	DYSF	2	71744062	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3123893	71744062	171455311	259	86866											
DYSF	8291	broad.mit.edu	37	chr2	71891327	71891327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccctggggtagtttcgagCtcttgtcctgccctgcctgt	11	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71891327	A	A	71891327	1	1	84	0	1	0	0	0	0	0	0	0	4899	812	28	3		3	DYSF	2	71891327	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	147265	71891327	171308046	260	86867											
FBXO41	150726	broad.mit.edu	37	chr2	73492457	73492457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccatagcaggcccggggCggggcgcatccaacgggccc	16	16	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73492457	A	A	73492457	3	1	84	1	0	0	0	0	1	0	0	0	5807	768	27	3	1146	3	FBXO41	2	73492457	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1601130	73492457	169706916	261	86868											
REG3A	5068	broad.mit.edu	37	chr2	79384813	79384813	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcccaaccttctccattGggctcggtgccctgtagagt	9	15	1	1	rs146689461		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79384813	T	T	79384813	2	4	84	1	0	0	0	0	0	0	0	1	13320	1335	47	2		2	REG3A	2	79384813	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5892356	79384813	163814560	262	86869											
VAMP8	8673	broad.mit.edu	37	chr2	85808946	85808946	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctacagagaatgctgctcGgtcctcctacccctcttccc	6	18	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85808946	A	A	85808946	1	1	84	0	1	0	0	0	0	0	0	0	17245	1131	39	4		4	VAMP8	2	85808946	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6424133	85808946	157390427	263	86870											
RMND5A	64795	broad.mit.edu	37	chr2	87357172	87357172	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaattaatccttccaattcTgttgggagaaagtgctgtaa	8	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87357172	A	A	87357172	1	1	84	0	1	0	0	0	0	0	0	0	13508	1595	55	5		5	RMND5A	2	87357172	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1548226	87357172	155842201	264	86871											
RMND5A	64795	broad.mit.edu	37	chr2	87373673	87373673	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaactatggctcttcctgtAggacgaggaatgtttacctt	9	9	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87373673	T	T	87373673	1	4	84	0	1	0	0	0	0	0	0	0	13508	435	15	5		5	RMND5A	2	87373673	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	16501	87373673	155825700	265	86872											
MAL	4118	broad.mit.edu	37	chr2	95715427	95715427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacggcttcacctacaggcaCtaccatgaaaacattgctgc	8	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95715427	A	A	95715427	3	1	84	1	0	0	0	0	1	0	0	0	9291	564	20	3	373	3	MAL	2	95715427	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	8341754	95715427	147483946	266	86873											
MRPS5	64969	broad.mit.edu	37	chr2	95772096	95772096	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttcccttacagttcctcTtgccctgtccctgccccacc	5	21	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95772096	C	C	95772096	1	2	84	0	1	0	0	0	0	0	0	0	9940	1624	56	5		5	MRPS5	2	95772096	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	56669	95772096	147427277	267	86874											
SNRNP200	23020	broad.mit.edu	37	chr2	96964864	96964864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattgagttcagaagcacaCcagactaagatttcatcaac	6	9	3	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96964864	A	A	96964864	1	1	84	0	1	0	0	0	0	0	0	0	14966	522	18	3		3	SNRNP200	2	96964864	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1192768	96964864	146234509	268	86875											
FER1L5	90342	broad.mit.edu	37	chr2	97368551	97368551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggagctcctccccccaCccctccagaggcttgcaatc	7	20	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97368551	A	A	97368551	1	1	84	0	1	0	0	0	0	0	0	0	5871	522	18	3		3	FER1L5	2	97368551	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	403687	97368551	145830822	269	86876											
ZAP70	7535	broad.mit.edu	37	chr2	98355742	98355742	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgactttctgagccccaaaAgtctacctcagccaagcaca	6	15	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98355742	G	G	98355742	1	3	84	0	1	0	0	0	0	0	0	0	17641	87	3	5		5	ZAP70	2	98355742	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	987191	98355742	144843631	270	86877											
CNGA3	1261	broad.mit.edu	37	chr2	99012816	99012816	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgttctgatttttgccaccAttgtgggcaatgtgggctcc	12	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99012816	T	T	99012816	3	4	84	1	0	0	0	0	1	0	0	0	3630	217	8	5	1209	5	CNGA3	2	99012816	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	657074	99012816	144186557	271	86878											
C2orf55	343990	broad.mit.edu	37	chr2	99413902	99413902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctggttgggtggctggtCcaaggtccccctccgcttct	12	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99413902	A	A	99413902	3	1	84	1	0	0	0	0	1	0	0	0	2198	855	30	3	385	3	C2orf55	2	99413902	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	401086	99413902	143785471	272	86879											
AFF3	3899	broad.mit.edu	37	chr2	100210038	100210038	+	Frame_Shift_Del	DEL	G	-	-													gaggaggcagaggcagccacGgtctgtgctttggacagagg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100210038	-	-	100210038	7	5	84	1	0	1	0	1	0	0	0	0	358	1103	39	0	1639	0	AFF3	2	100210038	Frame_Shift_Del	DEL	G	TCGA-17-Z055-01A-01W-0747-08	796136	100210038	142989335	273	86880											
NMS	129521	broad.mit.edu	37	chr2	101086939	101086939	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggccagcaaggagaaacCagactctcacaatgaaacat	9	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101086939	A	A	101086939	1	1	84	0	1	0	0	0	0	0	0	0	10597	609	21	2		2	NMS	2	101086939	5'Flank	SNP	C	TCGA-17-Z055-01A-01W-0747-08	876901	101086939	142112434	274	86881											
CREG2	200407	broad.mit.edu	37	chr2	102000066	102000066	+	Frame_Shift_Del	DEL	G	-	-													ttcatcagatcagccaccacGgggtccttggctgtcatgta							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102000066	-	-	102000066	7	5	84	1	0	1	0	1	0	0	0	0	3897	1103	39	0	344	0	CREG2	2	102000066	Frame_Shift_Del	DEL	G	TCGA-17-Z055-01A-01W-0747-08	913127	102000066	141199307	275	86882											
IL18R1	8809	broad.mit.edu	37	chr2	103003546	103003546	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggccactttctcattttcCacaccagaacccagctcctg	5	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103003546	T	T	103003546	1	4	84	0	1	0	0	0	0	0	0	0	7717	609	21	4		4	IL18R1	2	103003546	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1003480	103003546	140195827	276	86883											
SLC9A2	6549	broad.mit.edu	37	chr2	103281498	103281498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtagatgtgtttgtgcCcagagtgacaatggggaaat	14	6	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103281498	A	A	103281498	1	1	84	0	1	0	0	0	0	0	0	0	14826	638	22	2		2	SLC9A2	2	103281498	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	277952	103281498	139917875	277	86884											
UXS1	80146	broad.mit.edu	37	chr2	106739619	106739619	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcaataatgcatatttatGatgcaaaagggaacttcgga	8	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106739619	A	A	106739619	1	1	84	0	1	0	0	0	0	0	0	0	17236	1305	45	4		4	UXS1	2	106739619	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3458121	106739619	136459754	278	86885											
RGPD4	285190	broad.mit.edu	37	chr2	108499086	108499086	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctgccatatttaatcagAagctcctaaagcccattttt	5	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108499086	T	T	108499086	1	4	84	0	1	0	0	0	0	0	0	0	13396	261	9	5		5	RGPD4	2	108499086	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1759467	108499086	134700287	279	86886											
SLC5A7	60482	broad.mit.edu	37	chr2	108609531	108609531	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgggcggactcctgtttatTcctgcactgatgggagaaat	12	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108609531	A	A	108609531	2	1	84	1	0	0	0	0	0	0	0	1	14784	1771	62	5		5	SLC5A7	2	108609531	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	110445	108609531	134589842	280	86887											
SULT1C4	27233	broad.mit.edu	37	chr2	108998393	108998393	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctaaaatgcacttaggaTttttactgtctttgcacctt	6	9	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108998393	G	G	108998393	1	3	84	0	1	0	0	0	0	0	0	0	15497	1508	52	5		5	SULT1C4	2	108998393	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	388862	108998393	134200980	281	86888											
CCDC138	165055	broad.mit.edu	37	chr2	109455699	109455699	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgtgaatatcaaacttcAcgagccttttgtaaaattta	5	6	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109455699	T	T	109455699	3	4	84	1	0	0	0	0	1	0	0	0	2798	159	6	5	1307	5	CCDC138	2	109455699	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	457306	109455699	133743674	282	86889											
ZC3H6	376940	broad.mit.edu	37	chr2	113088700	113088700	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcagcaacaaccttccacAgaactcagcactcctactga	4	15	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113088700	G	G	113088700	2	3	84	1	0	0	0	0	0	0	0	1	17697	175	7	5		5	ZC3H6	2	113088700	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3633001	113088700	130110673	283	86890											
IL1RN	3557	broad.mit.edu	37	chr2	113875719	113875719	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaagcgtccaggaaaatgtCaagcgcatggagctccaggc	13	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113875719	G	G	113875719	1	3	84	0	1	0	0	0	0	0	0	0	7735	841	29	4		4	IL1RN	2	113875719	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	787019	113875719	129323654	284	86891											
DPP10	57628	broad.mit.edu	37	chr2	116525852	116525852	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgcctttctgagattgttCtgtgctcttctgtattttag	9	7	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116525852	A	A	116525852	1	1	84	0	1	0	0	0	0	0	0	0	4767	928	32	3		3	DPP10	2	116525852	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2650133	116525852	126673521	285	86892											
STEAP3	55240	broad.mit.edu	37	chr2	120002977	120002977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgaatgtctgactgccGtgtagttacgatgtataaga	13	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120002977	T	T	120002977	1	4	84	0	1	0	0	0	0	0	0	0	15397	1160	40	3		3	STEAP3	2	120002977	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3477125	120002977	123196396	286	86893											
GLI2	2736	broad.mit.edu	37	chr2	121708950	121708950	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacccccacatggagcactAcctccgttctgtgcacagca	8	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121708950	T	T	121708950	3	4	84	1	0	0	0	0	1	0	0	0	6502	391	14	5	396	5	GLI2	2	121708950	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1705973	121708950	121490423	287	86894											
CLASP1	23332	broad.mit.edu	37	chr2	122217471	122217471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagttacattaaagagacCcagctcacatgttcaaggag	9	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122217471	A	A	122217471	1	1	84	0	1	0	0	0	0	0	0	0	3485	638	22	2		2	CLASP1	2	122217471	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	508521	122217471	120981902	288	86895											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204414	125204414	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagcactggcactcggtccTcattgagcgggtgggcaagc	14	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125204414	A	A	125204414	3	1	84	1	0	0	0	0	1	0	0	0	3682	1551	54	5	840	5	CNTNAP5	2	125204414	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2986943	125204414	117994959	289	86896											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204434	125204434	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcattgagcgggtgggcaagCaggtgaacttcacggtggac	16	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125204434	G	G	125204434	3	3	84	1	0	0	0	0	1	0	0	0	3682	711	25	4	860	4	CNTNAP5	2	125204434	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	20	125204434	117994939	290	86897											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521289	125521289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttcaaagaccacttgCctgtcactcagatagttatc	5	12	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521289	A	A	125521289	3	1	84	1	0	0	0	0	1	0	0	0	3682	739	26	3	2330	3	CNTNAP5	2	125521289	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	316855	125521289	117678084	291	86898											
UGGT1	56886	broad.mit.edu	37	chr2	128865647	128865647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccttccagcaggtggGtccagtgctcttaaagaaca	10	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128865647	A	A	128865647	1	1	84	0	1	0	0	0	0	0	0	0	17067	1276	44	4		4	UGGT1	2	128865647	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3344358	128865647	114333726	292	86899											
ARHGEF4	50649	broad.mit.edu	37	chr2	131704167	131704167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcccagagtgctccaacggGactgaaccacatgggctggc	12	14	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131704167	T	T	131704167	3	4	84	1	0	0	0	0	1	0	0	0	910	1174	41	3	392	3	ARHGEF4	2	131704167	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2838520	131704167	111495206	293	86900											
PLEKHB2	55041	broad.mit.edu	37	chr2	131904420	131904420	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatttgcagggcatttctgTttgtgacaaaagtttttaat	9	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131904420	G	G	131904420	1	3	84	0	1	0	0	0	0	0	0	0	12160	1740	60	5		5	PLEKHB2	2	131904420	3'UTR	SNP	T	TCGA-17-Z055-01A-01W-0747-08	200253	131904420	111294953	294	86901											
PLEKHB2	55041	broad.mit.edu	37	chr2	131953196	131953196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacctggatgaaatttacCaaagttcattcagaaaacaa	5	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131953196	A	A	131953196	1	1	84	0	1	0	0	0	0	0	0	0	12160	609	21	2		2	PLEKHB2	2	131953196	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	48776	131953196	111246177	295	86902											
TUBA3D	113457	broad.mit.edu	37	chr2	132237909	132237909	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatctatgacatatgtcggCgcaacctggacattgaacgt	9	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132237909	G	G	132237909	3	3	84	1	0	0	0	0	1	0	0	0	16873	768	27	4	657	4	TUBA3D	2	132237909	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	284713	132237909	110961464	296	86903											
NCKAP5	344148	broad.mit.edu	37	chr2	133636531	133636531	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacaaataaatcaatgaaaTgttgtgttatgtgacaactt	6	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133636531	C	C	133636531	1	2	84	0	1	0	0	0	0	0	0	0	10318	1479	51	5		5	NCKAP5	2	133636531	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1398622	133636531	109562842	297	86904											
UBXN4	23190	broad.mit.edu	37	chr2	136540469	136540469	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatgtagtgtgacaagtaTaatatgtgcaataatcattg	9	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136540469	A	A	136540469	1	1	84	0	1	0	0	0	0	0	0	0	17042	1421	49	5		5	UBXN4	2	136540469	3'UTR	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2903938	136540469	106658904	298	86905											
LRP1B	53353	broad.mit.edu	37	chr2	141264544	141264544	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatatgttatcttcccctAtattaggagcttggggaata	8	8	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141264544	T	T	141264544	1	4	84	0	1	0	0	0	0	0	0	0	9042	464	16	5		5	LRP1B	2	141264544	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4724075	141264544	101934829	299	86906											
LRP1B	53353	broad.mit.edu	37	chr2	141272182	141272182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgatagagcatatataaTgcttaaaaactgattgagga	8	3	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141272182	C	C	141272182	1	2	84	0	1	0	0	0	0	0	0	0	9042	1479	51	5		5	LRP1B	2	141272182	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	7638	141272182	101927191	300	86907											
LRP1B	53353	broad.mit.edu	37	chr2	141707758	141707758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataccctaagtattattatgCatcaacttttaaaatgagat	4	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141707758	A	A	141707758	1	1	84	0	1	0	0	0	0	0	0	0	9042	725	25	3		3	LRP1B	2	141707758	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	435576	141707758	101491615	301	86908											
KYNU	8942	broad.mit.edu	37	chr2	143642922	143642922	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattattctctttcagttttAgagaacaacttgtaatggag	7	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143642922	T	T	143642922	1	4	84	0	1	0	0	0	0	0	0	0	8659	435	15	5		5	KYNU	2	143642922	5'UTR	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1935164	143642922	99556451	302	86909											
KYNU	8942	broad.mit.edu	37	chr2	143797987	143797987	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actttaatctgattgtttctCattccacagatctttaagca	4	9	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143797987	G	G	143797987	1	3	84	0	1	0	0	0	0	0	0	0	8659	841	29	4		4	KYNU	2	143797987	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	155065	143797987	99401386	303	86910											
MBD5	55777	broad.mit.edu	37	chr2	149243567	149243567	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaacaatgtctgagttTgtttaaatacttaatttggg	8	3	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149243567	C	C	149243567	1	2	84	0	1	0	0	0	0	0	0	0	9440	1827	63	5		5	MBD5	2	149243567	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5445580	149243567	93955806	304	86911											
NEB	4703	broad.mit.edu	37	chr2	152553887	152553887	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgttttgagctgtgacttTcatgcagtgtgaatggtatg	12	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152553887	A	A	152553887	4	1	84	1	0	0	0	0	0	1	0	0	10397	1792	62	5	25016	5	NEB	2	152553887	Nonsense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3310320	152553887	90645486	305	86912											
GPD2	2820	broad.mit.edu	37	chr2	157368611	157368611	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatttgattaggagggagCtatcctcactcagagataga	11	6	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157368611	T	T	157368611	1	4	84	0	1	0	0	0	0	0	0	0	6671	812	28	4		4	GPD2	2	157368611	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4814724	157368611	85830762	306	86913											
GPD2	2820	broad.mit.edu	37	chr2	157426095	157426095	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttactctttacctaatctctCactgctgccagtgacagaac	5	13	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157426095	T	T	157426095	1	4	84	0	1	0	0	0	0	0	0	0	6671	841	29	4		4	GPD2	2	157426095	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	57484	157426095	85773278	307	86914											
SCN3A	6328	broad.mit.edu	37	chr2	166018980	166018980	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatttcagttatttacaaaGgtggctgtacacccacagtc	7	10	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166018980	A	A	166018980	1	1	84	0	1	0	0	0	0	0	0	0	14031	1015	35	4		4	SCN3A	2	166018980	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	8592885	166018980	77180393	308	86915											
SCN2A	6326	broad.mit.edu	37	chr2	166210652	166210652	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactaatgatggaaagcaAttgaagcaatagaatgtttt	8	3	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166210652	G	G	166210652	1	3	84	0	1	0	0	0	0	0	0	0	14029	116	4	5		5	SCN2A	2	166210652	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	191672	166210652	76988721	309	86916											
TTC21B	79809	broad.mit.edu	37	chr2	166747407	166747407	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattttgctctggagttacgTttctcagccattgagaaaaa	8	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166747407	A	A	166747407	3	1	84	1	0	0	0	0	1	0	0	0	16814	1722	60	5	936	5	TTC21B	2	166747407	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	536755	166747407	76451966	310	86917											
XIRP2	129446	broad.mit.edu	37	chr2	168102688	168102688	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaagcatctcctgagataCagaaagaagaaattatcagg	8	8	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168102688	T	T	168102688	4	4	84	1	0	0	0	0	0	1	0	0	17557	479	17	4	4816	4	XIRP2	2	168102688	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1355281	168102688	75096685	311	86918											
XIRP2	129446	broad.mit.edu	37	chr2	168106256	168106256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtgacagtacaattgcCtacagaatccatacagaaga	8	8	0	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168106256	A	A	168106256	3	1	84	1	0	0	0	0	1	0	0	0	17557	681	24	2	8384	2	XIRP2	2	168106256	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3568	168106256	75093117	312	86919											
XIRP2	129446	broad.mit.edu	37	chr2	168107271	168107271	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcccaccgtcaccaactttTatcacaatagaatctactgc	4	15	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168107271	C	C	168107271	2	2	84	1	0	0	0	0	0	0	0	1	17557	1751	61	5		5	XIRP2	2	168107271	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1015	168107271	75092102	313	86920											
XIRP2	129446	broad.mit.edu	37	chr2	168108080	168108080	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagacttttcttgcaaacAtcctagagaactgcgagaaa	7	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168108080	G	G	168108080	3	3	84	1	0	0	0	0	1	0	0	0	17557	217	8	5	10208	5	XIRP2	2	168108080	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	809	168108080	75091293	314	86921											
NOSTRIN	115677	broad.mit.edu	37	chr2	169690892	169690892	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagggatggacttgctgcCcttagctacgaacacaagag	13	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169690892	T	T	169690892	1	4	84	0	1	0	0	0	0	0	0	0	10641	638	22	4		4	NOSTRIN	2	169690892	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1582812	169690892	73508481	315	86922											
G6PC2	57818	broad.mit.edu	37	chr2	169764517	169764517	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaaagtgcatccattccCctaactgtggttgctttcat	7	10	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169764517	A	A	169764517	2	1	84	1	0	0	0	0	0	0	0	1	6204	610	22	2		2	G6PC2	2	169764517	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	73625	169764517	73434856	316	86923											
LRP2	4036	broad.mit.edu	37	chr2	170063608	170063608	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttggtctctgcccatagtCagcccagaagaggtatctgt	10	11	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170063608	A	A	170063608	3	1	84	1	0	0	0	0	1	0	0	0	9043	826	29	3	7509	3	LRP2	2	170063608	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	299091	170063608	73135765	317	86924											
TLK1	9874	broad.mit.edu	37	chr2	171939285	171939285	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accatatttaaaatgaaattActtacctctgattctttgtc	3	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171939285	T	T	171939285	1	4	84	0	1	0	0	0	0	0	0	0	16066	406	14	5		5	TLK1	2	171939285	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1875677	171939285	71260088	318	86925											
WIPF1	7456	broad.mit.edu	37	chr2	175440100	175440100	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcctccagcaccagctcCtttaggttctgtagaagaag	9	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175440100	A	A	175440100	4	1	84	1	0	0	0	0	0	1	0	0	17494	690	24	2	1341	2	WIPF1	2	175440100	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3500815	175440100	67759273	319	86926											
HOXD10	3236	broad.mit.edu	37	chr2	176983853	176983853	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtaagagcgttaacctcaCcgacaggcaggtcaagattt	10	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176983853	T	T	176983853	3	4	84	1	0	0	0	0	1	0	0	0	7386	507	18	4	923	4	HOXD10	2	176983853	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1543753	176983853	66215520	320	86927											
PDE11A	50940	broad.mit.edu	37	chr2	178762853	178762853	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagagtttgggcccgatGcattattttcttgacaattt	9	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178762853	T	T	178762853	3	4	84	1	0	0	0	0	1	0	0	0	11725	1319	46	3	1635	3	PDE11A	2	178762853	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1779000	178762853	64436520	321	86928											
TTN	7273	broad.mit.edu	37	chr2	179414361	179414361	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaccaaacttgttaacTgcagaaacacggaattggta	7	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179414361	A	A	179414361	2	1	84	1	0	0	0	0	0	0	0	1	16861	1567	55	5		5	TTN	2	179414361	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	651508	179414361	63785012	322	86929											
TTN	7273	broad.mit.edu	37	chr2	179485619	179485620	+	Missense_Mutation	DNP	AT	TG	TG													agcttcttcatttctgaaccAtttggctttggcaccttcag							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	179485620	TG	TG	179485619	3	4	84	1	0	0	0	0	1	0	0	0	16861	217	8	5	62439	5	TTN	2	179485619	Missense_Mutation	DNP	AT	TCGA-17-Z055-01A-01W-0747-08	71258	179485619	63713754	323	86930											
TTN	7273	broad.mit.edu	37	chr2	179530122	179530122	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttttcatacgtggagtttCtggctcttcaggtacatcct	8	10	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179530122	T	T	179530122	3	4	84	1	0	0	0	0	1	0	0	0	16861	928	32	4		4	TTN	2	179530122	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	44503	179530122	63669251	324	86931											
TTN	7273	broad.mit.edu	37	chr2	179585261	179585261	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttaaatttcttgctgtttCtaacctgctttcgatcttta	4	8	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179585261	G	G	179585261	3	3	84	1	0	0	0	0	1	0	0	0	16861	913	32	4	81433	4	TTN	2	179585261	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	55139	179585261	63614112	325	86932											
TTN	7273	broad.mit.edu	37	chr2	179588906	179588906	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagagactcatcatgatttGaaagaatagaagagacttga	9	4	2	7			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179588906	T	T	179588906	1	4	84	0	1	0	0	0	0	0	0	0	16861	1305	45	3		3	TTN	2	179588906	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3645	179588906	63610467	326	86933											
TTN	7273	broad.mit.edu	37	chr2	179611114	179611114	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcatacttttatggtcaGgagtaaattcgggaactgtc	9	7	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179611114	A	A	179611114	3	1	84	1	0	0	0	0	1	0	0	0	16861	1000	35	4	94284	4	TTN	2	179611114	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	22208	179611114	63588259	327	86934											
TTN	7273	broad.mit.edu	37	chr2	179611919	179611919	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtgtggagtatctctctaGagtctctcctggaggtgtgg	16	7	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179611919	C	C	179611919	3	2	84	1	0	0	0	0	1	0	0	0	16861	933	33	4	95089	4	TTN	2	179611919	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	805	179611919	63587454	328	86935											
TTN	7273	broad.mit.edu	37	chr2	179634771	179634771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggaaagggctgtaggggGctgcctgatacttactctcc	13	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179634771	T	T	179634771	1	4	84	0	1	0	0	0	0	0	0	0	16861	1218	42	3		3	TTN	2	179634771	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	22852	179634771	63564602	329	86936											
TTN	7273	broad.mit.edu	37	chr2	179635562	179635562	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaacacctgagattattTaggggaacctgggatccaac	9	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179635562	A	A	179635562	1	1	84	0	1	0	0	0	0	0	0	0	16861	1769	61	5		5	TTN	2	179635562	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	791	179635562	63563811	330	86937											
TTN	7273	broad.mit.edu	37	chr2	179644665	179644665	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttgaaaatgaaaatatcAaataaaaaaaggaaagtata	5	3	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179644665	G	G	179644665	1	3	84	0	1	0	0	0	0	0	0	0	16861	145	5	5		5	TTN	2	179644665	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	9103	179644665	63554708	331	86938											
CCDC141	285025	broad.mit.edu	37	chr2	179732896	179732896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttccttcggctgctctaCaaactccagctctcttgatt	6	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179732896	T	T	179732896	3	4	84	1	0	0	0	0	1	0	0	0	2801	478	17	4	1953	4	CCDC141	2	179732896	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	88231	179732896	63466477	332	86939											
ITGA4	3676	broad.mit.edu	37	chr2	182388194	182388194	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaataaactgtgaagtcacaGataactctggcgtggtacaa	9	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182388194	C	C	182388194	3	2	84	1	0	0	0	0	1	0	0	0	7948	942	33	4	2178	4	ITGA4	2	182388194	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2655298	182388194	60811179	333	86940											
ITGA4	3676	broad.mit.edu	37	chr2	182400116	182400116	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtatagtagataagagagTgttcataactatacactagt	9	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182400116	C	C	182400116	1	2	84	0	1	0	0	0	0	0	0	0	7948	1711	59	5		5	ITGA4	2	182400116	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	11922	182400116	60799257	334	86941											
ZSWIM2	151112	broad.mit.edu	37	chr2	187703649	187703649	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatatgttttagaattttTaattagttttaagaatctaa	5	1	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187703649	C	C	187703649	1	2	84	0	1	0	0	0	0	0	0	0	18370	1769	61	5		5	ZSWIM2	2	187703649	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5303533	187703649	55495724	335	86942											
CALCRL	10203	broad.mit.edu	37	chr2	188248002	188248002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caactgaattgagtcctcagGactctcttctaattctgctg	7	11	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188248002	T	T	188248002	3	4	84	1	0	0	0	0	1	0	0	0	2606	1174	41	3	1347	3	CALCRL	2	188248002	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	544353	188248002	54951371	336	86943											
COL3A1	1281	broad.mit.edu	37	chr2	189871662	189871662	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaatgttttcatcttaGggccctgctggccctgctgg	11	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189871662	T	T	189871662	5	4	84	1	0	0	0	0	0	0	1	0	3720	1014	35	2	3375	2	COL3A1	2	189871662	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1623660	189871662	53327711	337	86944											
SLC40A1	30061	broad.mit.edu	37	chr2	190426728	190426728	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acataatgtggcccattgccAcaaaggagactgaaatcaat	8	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190426728	T	T	190426728	3	4	84	1	0	0	0	0	1	0	0	0	14742	159	6	5	127	5	SLC40A1	2	190426728	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	555066	190426728	52772645	338	86945											
DNAH7	56171	broad.mit.edu	37	chr2	196619063	196619063	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtccctgcacttaccaTcctcaggaggatgcttgtat	8	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196619063	C	C	196619063	3	2	84	1	0	0	0	0	1	0	0	0	4646	1435	50	5	324	5	DNAH7	2	196619063	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	6192335	196619063	46580310	339	86946											
DNAH7	56171	broad.mit.edu	37	chr2	196889177	196889177	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgatgggctggaagttcaTctgtcttcttatcatctcct	8	11	6	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196889177	C	C	196889177	3	2	84	1	0	0	0	0	1	0	0	0	4646	1435	50	5	11587	5	DNAH7	2	196889177	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	270114	196889177	46310196	340	86947											
DNAH7	56171	broad.mit.edu	37	chr2	196913108	196913108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatggagctgcctgctgCcagtggggctttgtactcac	13	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196913108	A	A	196913108	3	1	84	1	0	0	0	0	1	0	0	0	4646	740	26	3	12160	3	DNAH7	2	196913108	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	23931	196913108	46286265	341	86948											
HECW2	57520	broad.mit.edu	37	chr2	197194480	197194480	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgatttttgcatcaaacGggtattgtatcatgtgtcct	8	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197194480	A	A	197194480	1	1	84	0	1	0	0	0	0	0	0	0	7110	1131	39	4		4	HECW2	2	197194480	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	281372	197194480	46004893	342	86949											
RFTN2	130132	broad.mit.edu	37	chr2	198540116	198540116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacttgcggtctcttcaGggtagaaaatatttttccag	8	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198540116	T	T	198540116	3	4	84	1	0	0	0	0	1	0	0	0	13367	991	35	2	1474	2	RFTN2	2	198540116	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1345636	198540116	44659257	343	86950											
C2orf47	79568	broad.mit.edu	37	chr2	200821014	200821014	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctatccgtctctaatgagtTcaactattgctcgcagaagt	7	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200821014	G	G	200821014	1	3	84	0	1	0	0	0	0	0	0	0	2191	1798	62	5		5	C2orf47	2	200821014	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2280898	200821014	42378359	344	86951											
AOX1	316	broad.mit.edu	37	chr2	201488583	201488583	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtctttctgtgtcgtaGgtgttctgtgtgggtcagct	14	6	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201488583	T	T	201488583	5	4	84	1	0	0	0	0	0	0	1	0	731	1014	35	2	2075	2	AOX1	2	201488583	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	667569	201488583	41710790	345	86952											
PPIL3	53938	broad.mit.edu	37	chr2	201747087	201747087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggatctcctgtttgaacCatgaaacccttgatattcct	7	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201747087	A	A	201747087	3	1	84	1	0	0	0	0	1	0	0	0	12429	594	21	2	351	2	PPIL3	2	201747087	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	258504	201747087	41452286	346	86953											
NRP2	8828	broad.mit.edu	37	chr2	206580979	206580979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctcctgggcaaacactGtgggaacatcgccccgccca	10	16	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206580979	T	T	206580979	3	4	84	1	0	0	0	0	1	0	0	0	10756	1377	48	3	324	3	NRP2	2	206580979	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4833892	206580979	36618394	347	86954											
DYTN	391475	broad.mit.edu	37	chr2	207575338	207575338	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcatctgtaaagaaaacgtAaaatattatgaataaagtct	6	4	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207575338	T	T	207575338	1	4	84	0	1	0	0	0	0	0	0	0	4901	377	13	5		5	DYTN	2	207575338	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	994359	207575338	35624035	348	86955											
PIKFYVE	200576	broad.mit.edu	37	chr2	209191039	209191039	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcagcccaaaaattcagaCccttttgctcattcaaagga	5	11	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209191039	T	T	209191039	2	4	84	1	0	0	0	0	0	0	0	1	12019	506	18	4		4	PIKFYVE	2	209191039	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1615701	209191039	34008334	349	86956											
CPS1	1373	broad.mit.edu	37	chr2	211452731	211452731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtttatgattttggtctGttgcccatagctgggacttc	11	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211452731	T	T	211452731	1	4	84	0	1	0	0	0	0	0	0	0	3855	1392	48	3		3	CPS1	2	211452731	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2261692	211452731	31746642	350	86957											
CPS1	1373	broad.mit.edu	37	chr2	211454988	211454989	+	Intron	DEL	TG	-	-													accttgaattcatgtgtatcTgtgtgggaggtgggggcttc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	211454989	-	-	211454988	6	5	84	0	1	1	0	1	0	0	0	0	3855	1595	55	0		0	CPS1	2	211454988	Intron	DEL	TG	TCGA-17-Z055-01A-01W-0747-08	2257	211454988	31744385	351	86958											
CPS1	1373	broad.mit.edu	37	chr2	211542380	211542380	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaatcagttttaatccCtatgggaggagaaataagcg	11	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211542380	T	T	211542380	1	4	84	0	1	0	0	0	0	0	0	0	3855	696	24	4		4	CPS1	2	211542380	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	87392	211542380	31656993	352	86959											
ERBB4	2066	broad.mit.edu	37	chr2	212295768	212295768	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttggagatttcactaagaCattacgggctgccaaatccc	9	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212295768	T	T	212295768	3	4	84	1	0	0	0	0	1	0	0	0	5251	478	17	4	1413	4	ERBB4	2	212295768	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	753388	212295768	30903605	353	86960											
ABCA12	26154	broad.mit.edu	37	chr2	215847000	215847000	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catccaaaattactacccttGatccaccaatgagagctatg	5	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215847000	C	C	215847000	4	2	84	1	0	0	0	0	0	1	0	0	30	1294	45	4	3393	4	ABCA12	2	215847000	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3551232	215847000	27352373	354	86961											
RUFY4	285180	broad.mit.edu	37	chr2	218938551	218938551	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcaggtcacgctgctcCagttccacccaaacccaggg	8	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218938551	A	A	218938551	2	1	84	1	0	0	0	0	0	0	0	1	13852	581	21	2		2	RUFY4	2	218938551	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3091551	218938551	24260822	355	86962											
ZNF142	7701	broad.mit.edu	37	chr2	219508191	219508191	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctcaaagcggtgcttcttCagggcctctgtgggtgagga	15	9	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219508191	T	T	219508191	2	4	84	1	0	0	0	0	0	0	0	1	17857	813	29	4		4	ZNF142	2	219508191	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	569640	219508191	23691182	356	86963											
CUL3	8452	broad.mit.edu	37	chr2	225362547	225362547	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtgtgagctgtcgaccacTgtgtttggctaagtagaacc	13	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225362547	A	A	225362547	3	1	84	1	0	0	0	0	1	0	0	0	4089	1580	55	5	696	5	CUL3	2	225362547	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5854356	225362547	17836826	357	86964											
SP110	3431	broad.mit.edu	37	chr2	231065590	231065590	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tactctgagaccagcaatctCcaagttttaccttgtgtgac	7	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231065590	T	T	231065590	1	4	84	0	1	0	0	0	0	0	0	0	15075	870	30	4		4	SP110	2	231065590	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5703043	231065590	12133783	358	86965											
CHRND	1144	broad.mit.edu	37	chr2	233396169	233396169	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggccatcccccttatcGgcaagtgagtgacgctcaag	10	14	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233396169	A	A	233396169	3	1	84	1	0	0	0	0	1	0	0	0	3425	1116	39	4	958	4	CHRND	2	233396169	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2330579	233396169	9803204	359	86966											
COL6A3	1293	broad.mit.edu	37	chr2	238266378	238266378	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaggccacgtctttggcctCtgtggctgctgatgagccga	13	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238266378	A	A	238266378	1	1	84	0	1	0	0	0	0	0	0	0	3733	928	32	3		3	COL6A3	2	238266378	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4870209	238266378	4932995	360	86967											
COL6A3	1293	broad.mit.edu	37	chr2	238267962	238267962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggaagaaatgagaaatacTgggagagttttccatttgta	11	3	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238267962	A	A	238267962	1	1	84	0	1	0	0	0	0	0	0	0	3733	1595	55	5		5	COL6A3	2	238267962	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1584	238267962	4931411	361	86968											
HDAC4	9759	broad.mit.edu	37	chr2	240098312	240098312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggctccacacacacaCagagacccaatgaagaccca	7	17	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240098312	A	A	240098312	1	1	84	0	1	0	0	0	0	0	0	0	7076	493	17	3		3	HDAC4	2	240098312	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1830350	240098312	3101061	362	86969											
PASK	23178	broad.mit.edu	37	chr2	242054438	242054438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgcgttcacactaacaCggctctggcctgctctcact	9	16	3	0	rs140703087	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242054438	A	A	242054438	1	1	84	0	1	0	0	0	0	0	0	0	11566	551	19	3		3	PASK	2	242054438	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1956126	242054438	1144935	363	86970											
PASK	23178	broad.mit.edu	37	chr2	242065756	242065756	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctctgctgatgggcaCgtgtcctcagggccagcatc	13	14	2	1	rs56043607	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242065756	A	A	242065756	2	1	84	1	0	0	0	0	0	0	0	1	11566	523	19	3		3	PASK	2	242065756	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	11318	242065756	1133617	364	86971											
CNTN6	27255	broad.mit.edu	37	chr3	1367377	1367377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctccctcaaatcgtgtGtgtgcaatccaactggaccc	7	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1367377	T	T	1367377	1	4	84	0	1	0	0	0	0	0	0	0	3677	1392	48	3		3	CNTN6	3	1367377	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08		1367377	196655053	365	86972											
CNTN4	152330	broad.mit.edu	37	chr3	3072391	3072391	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatctctcaggcaggctcAcatatttttaacaggccatg	7	13	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3072391	T	T	3072391	1	4	84	0	1	0	0	0	0	0	0	0	3675	174	6	5		5	CNTN4	3	3072391	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1705014	3072391	194950039	366	86973											
IL5RA	3568	broad.mit.edu	37	chr3	3139691	3139691	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagcatgcgatatttctcCccagtgtgtctttgctgtat	8	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3139691	T	T	3139691	3	4	84	1	0	0	0	0	1	0	0	0	7770	623	22	4	740	4	IL5RA	3	3139691	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	67300	3139691	194882739	367	86974											
GRM7	2917	broad.mit.edu	37	chr3	7348398	7348398	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgccatgctgaatggCcaagcatgtgactttttagg	12	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7348398	A	A	7348398	1	1	84	0	1	0	0	0	0	0	0	0	6868	754	26	3		3	GRM7	3	7348398	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4208707	7348398	190674032	368	86975											
SRGAP3	9901	broad.mit.edu	37	chr3	9079756	9079757	+	Missense_Mutation	DNP	CC	AA	AA													cccactctcacctggtggtgCcgcattctgctctttcccct							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	9079757	AA	AA	9079756	3	1	84	1	0	0	0	0	1	0	0	0	15265	739	26	3	1955	3	SRGAP3	3	9079756	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	1731358	9079756	188942674	369	86976											
IRAK2	3656	broad.mit.edu	37	chr3	10283890	10283890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagaggaaaaagtggacaGcattgagctctttggcccct	11	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10283890	T	T	10283890	3	4	84	1	0	0	0	0	1	0	0	0	7893	971	34	3	1906	3	IRAK2	3	10283890	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1204134	10283890	187738540	370	86977											
CAND2	23066	broad.mit.edu	37	chr3	12858463	12858463	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacactggcagccctggacGccctggcccagagccagggc	13	18	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12858463	C	C	12858463	3	2	84	1	0	0	0	0	1	0	0	0	2642	1087	38	4	2070	4	CAND2	3	12858463	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2574573	12858463	185163967	371	86978											
SLC6A6	6533	broad.mit.edu	37	chr3	14489271	14489271	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcgcaagaacaagagtgtCtggatcaccatcagctccac	9	12	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14489271	A	A	14489271	2	1	84	1	0	0	0	0	0	0	0	1	14802	900	32	3		3	SLC6A6	3	14489271	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1630808	14489271	183533159	372	86979											
FGD5	152273	broad.mit.edu	37	chr3	14862492	14862492	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctctccctcactcctgatCgagagcgactccccggacaa	8	17	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14862492	A	A	14862492	2	1	84	1	0	0	0	0	0	0	0	1	5893	874	31	3		3	FGD5	3	14862492	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	373221	14862492	183159938	373	86980											
SATB1	6304	broad.mit.edu	37	chr3	18457508	18457508	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgactcacctgtgtaacTgaattttcaatgtgaccaca	6	10	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18457508	A	A	18457508	3	1	84	1	0	0	0	0	1	0	0	0	13965	1580	55	5	1817	5	SATB1	3	18457508	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3595016	18457508	179564922	374	86981											
ZNF385D	79750	broad.mit.edu	37	chr3	21466982	21466982	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctagaatacgtgctgtttAcctgtttaagttgcgtttcc	8	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21466982	T	T	21466982	5	4	84	1	0	0	0	0	0	0	1	0	18004	405	14	5	345	5	ZNF385D	3	21466982	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3009474	21466982	176555448	375	86982											
ZNF385D	79750	broad.mit.edu	37	chr3	21552321	21552321	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatccccaacgacgacgacGaggacaacaacaacaaagat	8	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21552321	T	T	21552321	1	4	84	0	1	0	0	0	0	0	0	0	18004	1073	37	3		3	ZNF385D	3	21552321	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	85339	21552321	176470109	376	86983											
RPL15	6138	broad.mit.edu	37	chr3	23959858	23959858	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatttttggtggagtattAgtgacaagccattgagtctt	11	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23959858	G	G	23959858	1	3	84	0	1	0	0	0	0	0	0	0	13673	435	15	5		5	RPL15	3	23959858	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2407537	23959858	174062572	377	86984											
RARB	5915	broad.mit.edu	37	chr3	25502764	25502764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccctcgagtgtacaaaCcctgcttcgtctgccaggac	8	17	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25502764	A	A	25502764	3	1	84	1	0	0	0	0	1	0	0	0	13161	507	18	3	244	3	RARB	3	25502764	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1542906	25502764	172519666	378	86985											
SLC4A7	9497	broad.mit.edu	37	chr3	27462238	27462238	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtccaatttcatggtactGtggtgccttgcccgctggac	11	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462238	A	A	27462238	4	1	84	1	0	0	0	0	0	1	0	0	14772	1386	48	4	2270	4	SLC4A7	3	27462238	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1959474	27462238	170560192	379	86986											
SUSD5	26032	broad.mit.edu	37	chr3	33216372	33216372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggcccatccctgggctGcttacctttcccacaggcct	10	16	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33216372	T	T	33216372	1	4	84	0	1	0	0	0	0	0	0	0	15529	1334	46	3		3	SUSD5	3	33216372	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5754134	33216372	164806058	380	86987											
STAC	6769	broad.mit.edu	37	chr3	36422208	36422208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcggtgggcgccgagcaaCcgccctctcctgcatccacc	12	18	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36422208	T	T	36422208	3	4	84	1	0	0	0	0	1	0	0	0	15357	507	18	4	75	4	STAC	3	36422208	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3205836	36422208	161600222	381	86988											
SCN10A	6336	broad.mit.edu	37	chr3	38797377	38797377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatgccttctctcactggCatttttggaggttaaaggtg	10	8	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38797377	A	A	38797377	3	1	84	1	0	0	0	0	1	0	0	0	14025	710	25	3	4579	3	SCN10A	3	38797377	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2375169	38797377	159225053	382	86989											
LRRC2	79442	broad.mit.edu	37	chr3	46563190	46563191	+	Intron	DNP	CG	AT	AT													gtatcacattatcacctgtgCgttttaaactgcaaaattcc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	46563191	AT	AT	46563190	1	1	84	0	1	0	0	0	0	0	0	0	9063	783	27	3		3	LRRC2	3	46563190	Intron	DNP	CG	TCGA-17-Z055-01A-01W-0747-08	7765813	46563190	151459240	383	86990											
USP19	10869	broad.mit.edu	37	chr3	49153913	49153913	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatgagcgtgaagtcctgCtcacggaaaagtactcttga	11	8	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49153913	T	T	49153913	2	4	84	1	0	0	0	0	0	0	0	1	17176	796	28	4		4	USP19	3	49153913	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2590723	49153913	148868517	384	86991											
KLHDC8B	200942	broad.mit.edu	37	chr3	49212336	49212336	+	Frame_Shift_Del	DEL	C	-	-													gtggcctgcagcagcctgggCcccacaacttctactctcgc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49212336	-	-	49212336	7	5	84	1	0	1	0	1	0	0	0	0	8434	739	26	0	713	0	KLHDC8B	3	49212336	Frame_Shift_Del	DEL	C	TCGA-17-Z055-01A-01W-0747-08	58423	49212336	148810094	385	86992											
MST1R	4486	broad.mit.edu	37	chr3	49932445	49932445	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtagagacggggtttcacTgtgttagccaggacggtctc	14	8	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49932445	G	G	49932445	1	3	84	0	1	0	0	0	0	0	0	0	9985	1595	55	5		5	MST1R	3	49932445	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	720109	49932445	148089985	386	86993											
DNAH1	25981	broad.mit.edu	37	chr3	52383115	52383115	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtgcgtacgtgtgcccaTgcacgtcggagggtgtctgt	15	10	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52383115	C	C	52383115	1	2	84	0	1	0	0	0	0	0	0	0	4637	1479	51	5		5	DNAH1	3	52383115	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2450670	52383115	145639315	387	86994											
ITIH1	3697	broad.mit.edu	37	chr3	52818544	52818544	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcatgccatagggagcccTgccttggtggccgtttgccc	14	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52818544	A	A	52818544	1	1	84	0	1	0	0	0	0	0	0	0	7973	1595	55	5		5	ITIH1	3	52818544	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	435429	52818544	145203886	388	86995											
CACNA1D	776	broad.mit.edu	37	chr3	53766747	53766747	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagcaggtagatgttgttAaagtttaagccaaatttgca	10	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53766747	C	C	53766747	1	2	84	0	1	0	0	0	0	0	0	0	2567	377	13	5		5	CACNA1D	3	53766747	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	948203	53766747	144255683	389	86996											
CACNA2D3	55799	broad.mit.edu	37	chr3	54871332	54871333	+	Intron	DNP	GG	TT	TT													ccccctctgactccagctctGgtgacttttgatttttaagc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54871333	TT	TT	54871332	1	4	84	0	1	0	0	0	0	0	0	0	2576	1363	47	2		2	CACNA2D3	3	54871332	Intron	DNP	GG	TCGA-17-Z055-01A-01W-0747-08	1104585	54871332	143151098	390	86997											
CACNA2D3	55799	broad.mit.edu	37	chr3	54925360	54925360	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtctagaggcctccccctGacgtctgttgttctgtttca	9	13	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54925360	T	T	54925360	1	4	84	0	1	0	0	0	0	0	0	0	2576	1305	45	3		3	CACNA2D3	3	54925360	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	54028	54925360	143097070	391	86998											
ARHGEF3	50650	broad.mit.edu	37	chr3	56789124	56789124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggcggcatttctggacCagggtcggggggcgaggatg	22	7	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56789124	A	A	56789124	3	1	84	1	0	0	0	0	1	0	0	0	906	595	21	2	1352	2	ARHGEF3	3	56789124	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1863764	56789124	141233306	392	86999											
FAM3D	131177	broad.mit.edu	37	chr3	58620229	58620229	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttcacagatggggaaactGaggctcagagaggggatgca	15	7	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58620229	T	T	58620229	1	4	84	0	1	0	0	0	0	0	0	0	5610	1305	45	3		3	FAM3D	3	58620229	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1831105	58620229	139402201	393	87000											
CADPS	8618	broad.mit.edu	37	chr3	62385122	62385122	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcgctgtccttcatgcTgatgccctgcagtcccccac	7	18	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62385122	C	C	62385122	3	2	84	1	0	0	0	0	1	0	0	0	2596	1580	55	5	44	5	CADPS	3	62385122	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3764893	62385122	135637308	394	87001											
CADPS	8618	broad.mit.edu	37	chr3	62751681	62751681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaagaaacagaaaaagagGgaaatgtgagaacttgtcct	11	4	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62751681	T	T	62751681	1	4	84	0	1	0	0	0	0	0	0	0	2596	1247	43	2		2	CADPS	3	62751681	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	366559	62751681	135270749	395	87002											
PRICKLE2	166336	broad.mit.edu	37	chr3	64084637	64084637	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctcccccataagccaccCccaaaagcgctttaacattt	3	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64084637	A	A	64084637	1	1	84	0	1	0	0	0	0	0	0	0	12593	638	22	2		2	PRICKLE2	3	64084637	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1332956	64084637	133937793	396	87003											
PDZRN3	23024	broad.mit.edu	37	chr3	73432950	73432950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtcgctgcggatcttcaCcttccactccatgcgcggct	9	18	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73432950	A	A	73432950	3	1	84	1	0	0	0	0	1	0	0	0	11803	507	18	3	437	3	PDZRN3	3	73432950	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9348313	73432950	124589480	397	87004											
CNTN3	5067	broad.mit.edu	37	chr3	74385657	74385657	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagtgaatccgtatgtaaAgcaatattttagaaatggac	8	5	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74385657	T	T	74385657	1	4	84	0	1	0	0	0	0	0	0	0	3674	87	3	5		5	CNTN3	3	74385657	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	952707	74385657	123636773	398	87005											
CNTN3	5067	broad.mit.edu	37	chr3	74414540	74414540	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctctcctcactggcagacTgggtacttgatttgatattt	9	9	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74414540	A	A	74414540	1	1	84	0	1	0	0	0	0	0	0	0	3674	1595	55	5		5	CNTN3	3	74414540	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	28883	74414540	123607890	399	87006											
ROBO2	6092	broad.mit.edu	37	chr3	77617682	77617682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtgataataaaaattcCcgccatttaaaatcaaggtg	7	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77617682	A	A	77617682	1	1	84	0	1	0	0	0	0	0	0	0	13625	638	22	2		2	ROBO2	3	77617682	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3203142	77617682	120404748	400	87007											
POU1F1	5449	broad.mit.edu	37	chr3	87322437	87322437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcacaattctttcaggcCcagaaaatccatctaagtgt	6	10	4	2	rs34134326	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87322437	A	A	87322437	1	1	84	0	1	0	0	0	0	0	0	0	12365	638	22	2		2	POU1F1	3	87322437	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9704755	87322437	110699993	401	87008											
C3orf38	285237	broad.mit.edu	37	chr3	88199144	88199144	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgttgccaggcgcgGgcccagtgggccgtaggggc	20	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88199144	T	T	88199144	1	4	84	0	1	0	0	0	0	0	0	0	2250	1247	43	2		2	C3orf38	3	88199144	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	876707	88199144	109823286	402	87009											
EPHA3	2042	broad.mit.edu	37	chr3	89468469	89468469	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagcagaggagagacttccTgggagaagcaagcattatgg	14	6	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89468469	A	A	89468469	3	1	84	1	0	0	0	0	1	0	0	0	5210	1580	55	5	2071	5	EPHA3	3	89468469	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1269325	89468469	108553961	403	87010											
STX19	415117	broad.mit.edu	37	chr3	93733408	93733408	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctctactaaaagagataTctgaatgaaaagatccctta	5	8	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93733408	A	A	93733408	3	1	84	1	0	0	0	0	1	0	0	0	15460	1435	50	5	182	5	STX19	3	93733408	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	4264939	93733408	104289022	404	87011											
DCBLD2	131566	broad.mit.edu	37	chr3	98600395	98600395	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtcctacctatttcagttCtgctgactccaattccatta	4	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98600395	G	G	98600395	3	3	84	1	0	0	0	0	1	0	0	0	4314	913	32	4	1965	4	DCBLD2	3	98600395	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4866987	98600395	99422035	405	87012											
ZPLD1	131368	broad.mit.edu	37	chr3	102175129	102175129	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgatactccagacccaccAacaatcatcagctatctacc	3	15	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102175129	G	G	102175129	2	3	84	1	0	0	0	0	0	0	0	1	18350	117	5	5		5	ZPLD1	3	102175129	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3574734	102175129	95847301	406	87013											
MYH15	22989	broad.mit.edu	37	chr3	108135592	108135592	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatcttcaggctgattcatCaagcactattttttaaaaaa	4	8	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108135592	T	T	108135592	1	4	84	0	1	0	0	0	0	0	0	0	10128	841	29	4		4	MYH15	3	108135592	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5960463	108135592	89886838	407	87014											
KIAA1524	57650	broad.mit.edu	37	chr3	108272597	108272597	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaagttattaaaaaaaaTagaagaaaacattaatgaac	5	3	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108272597	A	A	108272597	1	1	84	0	1	0	0	0	0	0	0	0	8309	1421	49	5		5	KIAA1524	3	108272597	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	137005	108272597	89749833	408	87015											
DZIP3	9666	broad.mit.edu	37	chr3	108409751	108409751	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaagatctgatacaagGtcggggtgtctatgcaaagg	13	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108409751	T	T	108409751	5	4	84	1	0	0	0	0	0	0	1	0	4905	1275	44	3		3	DZIP3	3	108409751	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	137154	108409751	89612679	409	87016											
GUCA1C	9626	broad.mit.edu	37	chr3	108634872	108634872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcctaagtcacaactagGgttctcttgaatggttcctg	10	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108634872	T	T	108634872	1	4	84	0	1	0	0	0	0	0	0	0	6955	1247	43	2		2	GUCA1C	3	108634872	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	225121	108634872	89387558	410	87017											
MORC1	27136	broad.mit.edu	37	chr3	108780771	108780771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgataagagacaactatGcacaggaaaaagcaaatgac	9	6	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108780771	T	T	108780771	1	4	84	0	1	0	0	0	0	0	0	0	9795	1334	46	3		3	MORC1	3	108780771	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	145899	108780771	89241659	411	87018											
TMPRSS7	344805	broad.mit.edu	37	chr3	111782559	111782559	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgctgctgatatatatccTtagtatttgtagttattatc	6	5	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111782559	A	A	111782559	1	1	84	0	1	0	0	0	0	0	0	0	16375	1624	56	5		5	TMPRSS7	3	111782559	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3001788	111782559	86239871	412	87019											
CD200R1L	344807	broad.mit.edu	37	chr3	112546420	112546420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggcttttgtgcaggaaGgctggcctctcaggattatt	13	7	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112546420	T	T	112546420	3	4	84	1	0	0	0	0	1	0	0	0	3012	1000	35	2	607	2	CD200R1L	3	112546420	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	763861	112546420	85476010	413	87020											
DRD3	1814	broad.mit.edu	37	chr3	113850266	113850266	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctgcaggtgtgacaagagGgaatcttgacatttctgggg	15	6	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113850266	C	C	113850266	1	2	84	0	1	0	0	0	0	0	0	0	4798	1247	43	4		4	DRD3	3	113850266	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1303846	113850266	84172164	414	87021											
GAP43	2596	broad.mit.edu	37	chr3	115342578	115342578	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaaacaggtagagctaaaGattttttacttcttgctgtt	7	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115342578	A	A	115342578	1	1	84	0	1	0	0	0	0	0	0	0	6297	957	33	4		4	GAP43	3	115342578	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1492312	115342578	82679852	415	87022											
LSAMP	4045	broad.mit.edu	37	chr3	115529250	115529250	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatccatttattcctctcaCcgacccaggtcctgcagagc	8	15	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115529250	T	T	115529250	3	4	84	1	0	0	0	0	1	0	0	0	9135	507	18	4	89	4	LSAMP	3	115529250	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	186672	115529250	82493180	416	87023											
NR1I2	8856	broad.mit.edu	37	chr3	119536081	119536081	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctgcccttgggtgacacCtccgagaggcagccagaccc	13	16	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119536081	A	A	119536081	1	1	84	0	1	0	0	0	0	0	0	0	10715	696	24	2		2	NR1I2	3	119536081	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4006831	119536081	78486349	417	87024											
GOLGB1	2804	broad.mit.edu	37	chr3	121411543	121411543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaattaacattcataaCaggtgttaaatattttactg	5	4	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121411543	A	A	121411543	1	1	84	0	1	0	0	0	0	0	0	0	6629	493	17	3		3	GOLGB1	3	121411543	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1875462	121411543	76610887	418	87025											
EAF2	55840	broad.mit.edu	37	chr3	121554257	121554257	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagtgaggaccatccgGggatagagggggagcctccc	17	10	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121554257	A	A	121554257	1	1	84	0	1	0	0	0	0	0	0	0	4916	1247	43	4		4	EAF2	3	121554257	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	142714	121554257	76468173	419	87026											
ADCY5	111	broad.mit.edu	37	chr3	123049914	123049914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagtaggaaagagaagtgGgagggaaagaaacgagaagc	16	2	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123049914	T	T	123049914	1	4	84	0	1	0	0	0	0	0	0	0	297	1247	43	2		2	ADCY5	3	123049914	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1495657	123049914	74972516	420	87027											
MYLK	4638	broad.mit.edu	37	chr3	123457744	123457744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcagacagaaacctcacCttgagccaggtgacctgcgg	13	12	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123457744	A	A	123457744	3	1	84	1	0	0	0	0	1	0	0	0	10150	695	24	2	5268	2	MYLK	3	123457744	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	407830	123457744	74564686	421	87028											
KALRN	8997	broad.mit.edu	37	chr3	123871861	123871861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagctctgtgaaattcCttcactttttcttaaaggtt	5	9	5	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123871861	A	A	123871861	1	1	84	0	1	0	0	0	0	0	0	0	8045	696	24	2		2	KALRN	3	123871861	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	414117	123871861	74150569	422	87029											
ALDH1L1	10840	broad.mit.edu	37	chr3	125856620	125856620	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgcagctgcctgagggctCtgcagggcctgctgcaggga	17	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125856620	A	A	125856620	1	1	84	0	1	0	0	0	0	0	0	0	494	928	32	3		3	ALDH1L1	3	125856620	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1984759	125856620	72165810	423	87030											
COL6A6	131873	broad.mit.edu	37	chr3	130284196	130284197	+	Missense_Mutation	DNP	CC	AA	AA													cagattgccgtgctggtgacCcaccgagattcagaagacaa							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	130284197	AA	AA	130284196	3	1	84	1	0	0	0	0	1	0	0	0	3735	610	22	2	1030	2	COL6A6	3	130284196	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	4427576	130284196	67738234	424	87031											
TMEM108	66000	broad.mit.edu	37	chr3	133099998	133099998	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcagcgtgcccatctcCtcctgctgtaagtgccgccc	9	18	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133099998	T	T	133099998	2	4	84	1	0	0	0	0	0	0	0	1	16147	668	24	4		4	TMEM108	3	133099998	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2815802	133099998	64922432	425	87032											
PPP2R3A	5523	broad.mit.edu	37	chr3	135742036	135742036	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggctgaagtcatttcagcAgacacaggtttgaaatttgg	12	7	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135742036	T	T	135742036	1	4	84	0	1	0	0	0	0	0	0	0	12489	188	7	5		5	PPP2R3A	3	135742036	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2642038	135742036	62280394	426	87033											
NCK1	4690	broad.mit.edu	37	chr3	136618741	136618741	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggttttctcttctagtgGgatttcttctttctggagat	11	6	5	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136618741	A	A	136618741	1	1	84	0	1	0	0	0	0	0	0	0	10314	1247	43	4		4	NCK1	3	136618741	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	876705	136618741	61403689	427	87034											
DZIP1L	199221	broad.mit.edu	37	chr3	137805899	137805899	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagcttatcaaatgggcccTtgcaggtattaaaacatgtt	8	7	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137805899	A	A	137805899	1	1	84	0	1	0	0	0	0	0	0	0	4904	1624	56	5		5	DZIP1L	3	137805899	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1187158	137805899	60216531	428	87035											
CEP70	80321	broad.mit.edu	37	chr3	138227117	138227117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaagacgaattctacaatGtttttagtcaaatagttatg	7	4	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138227117	T	T	138227117	1	4	84	0	1	0	0	0	0	0	0	0	3289	1392	48	3		3	CEP70	3	138227117	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	421218	138227117	59795313	429	87036											
PIK3CB	5291	broad.mit.edu	37	chr3	138407855	138407855	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgaacagtttgtttatcAaacacttcagatcaccgaat	5	9	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138407855	G	G	138407855	1	3	84	0	1	0	0	0	0	0	0	0	12009	145	5	5		5	PIK3CB	3	138407855	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	180738	138407855	59614575	430	87037											
PRR23A	729627	broad.mit.edu	37	chr3	138724643	138724643	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggggtccgcgtcctcctcGtaggcctcttcctgggcggc	14	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138724643	A	A	138724643	2	1	84	1	0	0	0	0	0	0	0	1	12700	1140	40	4		4	PRR23A	3	138724643	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	316788	138724643	59297787	431	87038											
MRPS22	56945	broad.mit.edu	37	chr3	139068980	139068980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacaggaactaaaaatacGtcctcacaaacgcatccttg	6	12	1	0	rs149021264	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139068980	T	T	139068980	1	4	84	0	1	0	0	0	0	0	0	0	9927	1160	40	3		3	MRPS22	3	139068980	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	344337	139068980	58953450	432	87039											
TFDP2	7029	broad.mit.edu	37	chr3	141692810	141692810	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattggaaatattttatatTagaattacatttttaaatta	3	1	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141692810	G	G	141692810	1	3	84	0	1	0	0	0	0	0	0	0	15921	1769	61	5		5	TFDP2	3	141692810	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2623830	141692810	56329620	433	87040											
TRPC1	7220	broad.mit.edu	37	chr3	142503642	142503642	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgtaagaagataatgActgttttgacagtaggcatc	9	8	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142503642	G	G	142503642	3	3	84	1	0	0	0	0	1	0	0	0	16703	275	10	5	977	5	TRPC1	3	142503642	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	810832	142503642	55518788	434	87041											
GYG1	2992	broad.mit.edu	37	chr3	148712125	148712125	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatccttctccctgttgctGacatcattggacattgaggc	8	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148712125	A	A	148712125	1	1	84	0	1	0	0	0	0	0	0	0	6970	1305	45	4		4	GYG1	3	148712125	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6208483	148712125	49310305	435	87042											
MED12L	116931	broad.mit.edu	37	chr3	151078261	151078261	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtatatttttctcctcaGgttgtgtggtgtggtcaagc	11	7	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151078261	T	T	151078261	5	4	84	1	0	0	0	0	0	0	1	0	9522	1014	35	2	2794	2	MED12L	3	151078261	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2366136	151078261	46944169	436	87043											
MED12L	116931	broad.mit.edu	37	chr3	151107730	151107730	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taattagctgtgtgatatgtGgagttacgtaactttttaaa	9	3	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151107730	C	C	151107730	1	2	84	0	1	0	0	0	0	0	0	0	9522	1363	47	4		4	MED12L	3	151107730	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	29469	151107730	46914700	437	87044											
DHX36	170506	broad.mit.edu	37	chr3	154034036	154034036	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atactgaagaaaataaaggcTaagtaatatatgttcaacaa	6	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154034036	A	A	154034036	1	1	84	0	1	0	0	0	0	0	0	0	4549	1537	53	5		5	DHX36	3	154034036	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2926306	154034036	43988394	438	87045											
KCNAB1	7881	broad.mit.edu	37	chr3	156241547	156241547	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaggttcacatattttaTtgaattaccattctttgaca	5	6	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156241547	C	C	156241547	1	2	84	0	1	0	0	0	0	0	0	0	8079	1508	52	5		5	KCNAB1	3	156241547	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2207511	156241547	41780883	439	87046											
KCNAB1	7881	broad.mit.edu	37	chr3	156254565	156254565	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaaccacagaagctgcatGgttaaaatagcggcctgtgc	11	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156254565	A	A	156254565	1	1	84	0	1	0	0	0	0	0	0	0	8079	1363	47	4		4	KCNAB1	3	156254565	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	13018	156254565	41767865	440	87047											
TIPARP	25976	broad.mit.edu	37	chr3	156395640	156395640	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaagattgggaactggaAccctgaggtctttgaggcca	13	7	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156395640	T	T	156395640	3	4	84	1	0	0	0	0	1	0	0	0	16047	43	2	5	156	5	TIPARP	3	156395640	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	141075	156395640	41626790	441	87048											
CCNL1	57018	broad.mit.edu	37	chr3	156867082	156867082	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacatttacttactgtcttCttggagtatgtgatctagaa	7	6	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156867082	T	T	156867082	3	4	84	1	0	0	0	0	1	0	0	0	2961	913	32	4	362	4	CCNL1	3	156867082	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	471442	156867082	41155348	442	87049											
SHOX2	6474	broad.mit.edu	37	chr3	157817615	157817615	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacattcaggtattttcatAtttaaaaacagcttgaaact	4	6	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157817615	G	G	157817615	1	3	84	0	1	0	0	0	0	0	0	0	14402	464	16	5		5	SHOX2	3	157817615	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	950533	157817615	40204815	443	87050											
SHOX2	6474	broad.mit.edu	37	chr3	157820705	157820705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccccagcggggccacacGtgcatccacacgaacacaca	9	18	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157820705	T	T	157820705	1	4	84	0	1	0	0	0	0	0	0	0	14402	1160	40	3		3	SHOX2	3	157820705	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3090	157820705	40201725	444	87051											
SCHIP1	29970	broad.mit.edu	37	chr3	158980280	158980281	+	Intron	DNP	CC	AA	AA													tgagtttctgagtctgtggaCcatgatccaacagtaatcat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	158980281	AA	AA	158980280	1	1	84	0	1	0	0	0	0	0	0	0	14017	522	18	3		3	SCHIP1	3	158980280	Intron	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	1159575	158980280	39042150	445	87052											
SCHIP1	29970	broad.mit.edu	37	chr3	158980358	158980358	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcagcgagcatggcgagaGtacctgcagcggcaggagcc	15	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158980358	A	A	158980358	2	1	84	1	0	0	0	0	0	0	0	1	14017	1020	36	4		4	SCHIP1	3	158980358	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	78	158980358	39042072	446	87053											
BCHE	590	broad.mit.edu	37	chr3	165547235	165547235	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatactaaagtctaccccAgagaccaagcaaagctaagc	6	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165547235	G	G	165547235	1	3	84	0	1	0	0	0	0	0	0	0	1363	203	7	5		5	BCHE	3	165547235	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	6566877	165547235	32475195	447	87054											
ZBBX	79740	broad.mit.edu	37	chr3	167051656	167051656	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtacagatttgggtttatGttgaattttactggtttcct	9	4	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167051656	A	A	167051656	3	1	84	1	0	0	0	0	1	0	0	0	17643	1377	48	4	1804	4	ZBBX	3	167051656	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1504421	167051656	30970774	448	87055											
SAMD7	344658	broad.mit.edu	37	chr3	169654209	169654209	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcactatgggattaaagcTagggccggcactaaaaattc	11	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169654209	C	C	169654209	3	2	84	1	0	0	0	0	1	0	0	0	13935	1522	53	5	1146	5	SAMD7	3	169654209	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2602553	169654209	28368221	449	87056											
SLC7A14	57709	broad.mit.edu	37	chr3	170198380	170198380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcacgcagatggtcaccGtgtgccccgtcgctgctgtg	15	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170198380	T	T	170198380	3	4	84	1	0	0	0	0	1	0	0	0	14810	1145	40	3	632	3	SLC7A14	3	170198380	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	544171	170198380	27824050	450	87057											
TNIK	23043	broad.mit.edu	37	chr3	170784088	170784088	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatagctttctcgccccagCccattatctgattggaatga	7	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170784088	G	G	170784088	3	3	84	1	0	0	0	0	1	0	0	0	16436	739	26	4	203	4	TNIK	3	170784088	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	585708	170784088	27238342	451	87058											
NAALADL2	254827	broad.mit.edu	37	chr3	174777511	174777511	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccttatcagatccaaGgagatcaatgtcatcatcat	5	12	5	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174777511	A	A	174777511	1	1	84	0	1	0	0	0	0	0	0	0	10224	1015	35	4		4	NAALADL2	3	174777511	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3993423	174777511	23244919	452	87059											
USP13	8975	broad.mit.edu	37	chr3	179459935	179459935	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcattttctactaagtcttAgtggctcaatattcatacat	4	8	5	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179459935	G	G	179459935	1	3	84	0	1	0	0	0	0	0	0	0	17170	435	15	5		5	USP13	3	179459935	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4682424	179459935	18562495	453	87060											
ATP11B	23200	broad.mit.edu	37	chr3	182584169	182584169	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaatccaacctggcaccAtcgcagttggagtactatgc	10	12	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182584169	T	T	182584169	2	4	84	1	0	0	0	0	0	0	0	1	1124	204	8	5		5	ATP11B	3	182584169	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3124234	182584169	15438261	454	87061											
ABCC5	10057	broad.mit.edu	37	chr3	183699462	183699462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgtgaattataagaccCaaagaatccaaggtccttct	8	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183699462	A	A	183699462	1	1	84	0	1	0	0	0	0	0	0	0	56	609	21	2		2	ABCC5	3	183699462	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1115293	183699462	14322968	455	87062											
HTR3D	200909	broad.mit.edu	37	chr3	183756227	183756227	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccctgtgcctgtccctgaTggtgggcagcctgctggaga	15	13	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183756227	A	A	183756227	3	1	84	1	0	0	0	0	1	0	0	0	7517	1464	51	5	1146	5	HTR3D	3	183756227	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	56765	183756227	14266203	456	87063											
HTR3C	170572	broad.mit.edu	37	chr3	183776234	183776234	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggacagcatgctgctgggCatggacaaggaggtgtggga	19	6	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183776234	A	A	183776234	2	1	84	1	0	0	0	0	0	0	0	1	7516	697	25	3		3	HTR3C	3	183776234	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	20007	183776234	14246196	457	87064											
EIF4G1	1981	broad.mit.edu	37	chr3	184043513	184043513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttcctgttagtgccacGtgtctgggccactgagacac	11	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184043513	T	T	184043513	1	4	84	0	1	0	0	0	0	0	0	0	5078	1160	40	3		3	EIF4G1	3	184043513	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	267279	184043513	13978917	458	87065											
CHRD	8646	broad.mit.edu	37	chr3	184098565	184098565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcggggtgatgcgctgcgtGctgtgcgcctgcgaggcggt	19	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184098565	T	T	184098565	2	4	84	1	0	0	0	0	0	0	0	1	3403	1306	46	3		3	CHRD	3	184098565	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	55052	184098565	13923865	459	87066											
ETV5	2119	broad.mit.edu	37	chr3	185775021	185775021	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgatacatggtaggctccTgtttgactttgcctgtttgg	11	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185775021	C	C	185775021	3	2	84	1	0	0	0	0	1	0	0	0	5324	1580	55	5	492	5	ETV5	3	185775021	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1676456	185775021	12247409	460	87067											
AHSG	197	broad.mit.edu	37	chr3	186338572	186338572	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactacgacctgcgccacacCttcatgggtgtggtctcatt	9	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186338572	T	T	186338572	2	4	84	1	0	0	0	0	0	0	0	1	420	668	24	4		4	AHSG	3	186338572	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	563551	186338572	11683858	461	87068											
ATP13A4	84239	broad.mit.edu	37	chr3	193182776	193182776	+	Frame_Shift_Del	DEL	G	-	-													tccacatacgttgatcctctGggggctaatgcagaagatgc					rs146360602		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	193182776	-	-	193182776	7	5	84	1	0	1	0	1	0	0	0	0	1130	1357	47	0	2252	0	ATP13A4	3	193182776	Frame_Shift_Del	DEL	G	TCGA-17-Z055-01A-01W-0747-08	6844204	193182776	4839654	462	87069											
PIGX	54965	broad.mit.edu	37	chr3	196454905	196454905	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcattgactgttttcaaGcctttttgcctgtgcactgc	9	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196454905	A	A	196454905	3	1	84	1	0	0	0	0	1	0	0	0	11998	971	34	4	444	4	PIGX	3	196454905	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3272129	196454905	1567525	463	87070											
EVC2	132884	broad.mit.edu	37	chr4	5633700	5633700	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaaagcgagagacttcctCaagtgctcctgttccaggcc	10	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5633700	A	A	5633700	3	1	84	1	0	0	0	0	1	0	0	0	5328	825	29	3	2444	3	EVC2	4	5633700	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08		5633700	185520576	464	87071											
C4orf50	389197	broad.mit.edu	37	chr4	5961217	5961217	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggagctcagagggtgctGggacgttatcgacttggagg	17	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5961217	A	A	5961217	3	1	84	1	0	0	0	0	1	0	0	0	2299	1348	47	4	118	4	C4orf50	4	5961217	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	327517	5961217	185193059	465	87072											
BOD1L	259282	broad.mit.edu	37	chr4	13602301	13602301	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaatcatttgtggtactggTggaaataatcaaaactttgc	9	5	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13602301	C	C	13602301	3	2	84	1	0	0	0	0	1	0	0	0	1489	1696	59	5	3000	5	BOD1L	4	13602301	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	7641084	13602301	177551975	466	87073											
PROM1	8842	broad.mit.edu	37	chr4	16034984	16034984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatttcctcaggaagggcCcattttccttctgtcgctgg	10	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16034984	A	A	16034984	3	1	84	1	0	0	0	0	1	0	0	0	12661	623	22	2	2237	2	PROM1	4	16034984	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2432683	16034984	175119292	467	87074											
SLIT2	9353	broad.mit.edu	37	chr4	20493253	20493253	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatatattttagaaatatagGaccattttatcatcatgtat	4	4	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20493253	C	C	20493253	1	2	84	0	1	0	0	0	0	0	0	0	14854	1189	41	4		4	SLIT2	4	20493253	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4458269	20493253	170661023	468	87075											
SLIT2	9353	broad.mit.edu	37	chr4	20599873	20599873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatcctagtaatgccaggGttactttctactagattgcc	7	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20599873	T	T	20599873	1	4	84	0	1	0	0	0	0	0	0	0	14854	1276	44	3		3	SLIT2	4	20599873	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	106620	20599873	170554403	469	87076											
GPR125	166647	broad.mit.edu	37	chr4	22415263	22415263	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggtaaccacagtacgtcGttttccatcatcagccaaat	8	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22415263	A	A	22415263	4	1	84	1	0	0	0	0	0	1	0	0	6704	1153	40	4	2009	4	GPR125	4	22415263	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1815390	22415263	168739013	470	87077											
DHX15	1665	broad.mit.edu	37	chr4	24541735	24541735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttccctctattacctgaCaacatagcagtaatagatag	5	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24541735	A	A	24541735	3	1	84	1	0	0	0	0	1	0	0	0	4541	477	17	3	625	3	DHX15	4	24541735	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2126472	24541735	166612541	471	87078											
CHRNA9	55584	broad.mit.edu	37	chr4	40350888	40350888	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcggctttcattttccttatCtgaccttcagggctgatgat	9	10	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40350888	A	A	40350888	1	1	84	0	1	0	0	0	0	0	0	0	3420	928	32	3		3	CHRNA9	4	40350888	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	15809153	40350888	150803388	472	87079											
GABRG1	2565	broad.mit.edu	37	chr4	46060227	46060227	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatagcataatattacatGtcatacccaacgatgttctt	4	8	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46060227	A	A	46060227	1	1	84	0	1	0	0	0	0	0	0	0	6231	1392	48	4		4	GABRG1	4	46060227	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5709339	46060227	145094049	473	87080											
GABRA4	2557	broad.mit.edu	37	chr4	46930701	46930701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttcccacctcagttctGttgccaacatcagattcaga	7	12	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46930701	T	T	46930701	3	4	84	1	0	0	0	0	1	0	0	0	6223	1368	48	3	462	3	GABRA4	4	46930701	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	870474	46930701	144223575	474	87081											
ATP10D	57205	broad.mit.edu	37	chr4	47574221	47574221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggcagacattgggataGgggtctcaggtcaagaaggc	16	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47574221	T	T	47574221	3	4	84	1	0	0	0	0	1	0	0	0	1122	1000	35	2	3276	2	ATP10D	4	47574221	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	643520	47574221	143580055	475	87082											
TXK	7294	broad.mit.edu	37	chr4	48091864	48091864	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggagaaagagaaatcaatAtttcaagcctagttgctaat	8	5	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48091864	G	G	48091864	1	3	84	0	1	0	0	0	0	0	0	0	16912	464	16	5		5	TXK	4	48091864	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	517643	48091864	143062412	476	87083											
LRRC66	339977	broad.mit.edu	37	chr4	52863792	52863792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacacagcccaagactgaCtaatgccaaggatcagcact	8	12	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52863792	A	A	52863792	1	1	84	0	1	0	0	0	0	0	0	0	9105	580	20	3		3	LRRC66	4	52863792	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4771928	52863792	138290484	477	87084											
SPATA18	132671	broad.mit.edu	37	chr4	52945842	52945842	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctcccatcaatcctaatAttcttaggatgtcagagtgt	6	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52945842	T	T	52945842	1	4	84	0	1	0	0	0	0	0	0	0	15119	464	16	5		5	SPATA18	4	52945842	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	82050	52945842	138208434	478	87085											
ADAMTS3	9508	broad.mit.edu	37	chr4	73175338	73175338	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcagtcatggcccacagtCagccaatttatagcaaactg	8	11	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73175338	A	A	73175338	1	1	84	0	1	0	0	0	0	0	0	0	267	841	29	3		3	ADAMTS3	4	73175338	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	20229496	73175338	117978938	479	87086											
ADAMTS3	9508	broad.mit.edu	37	chr4	73185000	73185000	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctaagagtcagtttcatgtCtgtaggctataaaataaata	7	6	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73185000	A	A	73185000	1	1	84	0	1	0	0	0	0	0	0	0	267	928	32	3		3	ADAMTS3	4	73185000	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9662	73185000	117969276	480	87087											
CXCL6	6372	broad.mit.edu	37	chr4	74702983	74702983	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccccttttctaaagaaagtCatccagaaaattttggacag	7	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74702983	A	A	74702983	2	1	84	1	0	0	0	0	0	0	0	1	4121	813	29	3		3	CXCL6	4	74702983	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1517983	74702983	116451293	481	87088											
CNOT6L	246175	broad.mit.edu	37	chr4	78669518	78669518	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taatgtaatccatggcctcgGaggaagctgctctggatgaa	12	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78669518	A	A	78669518	3	1	84	1	0	0	0	0	1	0	0	0	3655	1174	41	4	1184	4	CNOT6L	4	78669518	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3966535	78669518	112484758	482	87089											
FRAS1	80144	broad.mit.edu	37	chr4	79158662	79158662	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagcttatgcctctttacAggatgccacaatttggaagc	9	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79158662	G	G	79158662	5	3	84	1	0	0	0	0	0	0	1	0	6102	202	7	5	117	5	FRAS1	4	79158662	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	489144	79158662	111995614	483	87090											
FRAS1	80144	broad.mit.edu	37	chr4	79204011	79204011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggcccttgcaaggtgtGtgagtgccgaggggctcagg	18	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79204011	T	T	79204011	3	4	84	1	0	0	0	0	1	0	0	0	6102	1377	48	3	1191	3	FRAS1	4	79204011	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	45349	79204011	111950265	484	87091											
FRAS1	80144	broad.mit.edu	37	chr4	79207453	79207453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgcattttctgtttgGgacctggagcctcaagattg	10	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79207453	T	T	79207453	1	4	84	0	1	0	0	0	0	0	0	0	6102	1247	43	2		2	FRAS1	4	79207453	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3442	79207453	111946823	485	87092											
C4orf22	255119	broad.mit.edu	37	chr4	81308173	81308173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggttggcagatgacgctGcaggtagcgttcacaaggaa	16	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81308173	T	T	81308173	1	4	84	0	1	0	0	0	0	0	0	0	2278	1334	46	3		3	C4orf22	4	81308173	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2100720	81308173	109846103	486	87093											
WDFY3	23001	broad.mit.edu	37	chr4	85599294	85599294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgactcagatgggaagCggagctggaaaaagcctgac	13	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85599294	A	A	85599294	1	1	84	0	1	0	0	0	0	0	0	0	17397	783	27	3		3	WDFY3	4	85599294	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4291121	85599294	105554982	487	87094											
WDFY3	23001	broad.mit.edu	37	chr4	85626690	85626690	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atacaaaatgtaactcaattCcaagttactatacactatct	2	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85626690	A	A	85626690	1	1	84	0	1	0	0	0	0	0	0	0	17397	870	30	3		3	WDFY3	4	85626690	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	27396	85626690	105527586	488	87095											
ARHGAP24	83478	broad.mit.edu	37	chr4	86491812	86491812	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagacttggcatactcgcTggtttgtgctcaagggggat	13	8	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86491812	G	G	86491812	3	3	84	1	0	0	0	0	1	0	0	0	875	1580	55	5	120	5	ARHGAP24	4	86491812	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	865122	86491812	104662464	489	87096											
PTPN13	5783	broad.mit.edu	37	chr4	87687592	87687592	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctaatttttaggtgatcgCgtcctagctgtcaatggagt	11	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87687592	G	G	87687592	2	3	84	1	0	0	0	0	0	0	0	1	12888	755	27	4		4	PTPN13	4	87687592	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1195780	87687592	103466684	490	87097											
GRID2	2895	broad.mit.edu	37	chr4	94690481	94690481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaggaggcgccctggaCataaagagctttgcaggggt	15	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94690481	A	A	94690481	3	1	84	1	0	0	0	0	1	0	0	0	6838	477	17	3	2539	3	GRID2	4	94690481	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	7002889	94690481	96463795	491	87098											
ADH6	130	broad.mit.edu	37	chr4	100131292	100131292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagccacagctaattaGgcatactttctctagaggag	10	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100131292	T	T	100131292	3	4	84	1	0	0	0	0	1	0	0	0	312	991	35	2	637	2	ADH6	4	100131292	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5440811	100131292	91022984	492	87099											
ADH1B	125	broad.mit.edu	37	chr4	100237162	100237162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttggccactgcattctcatCcaccaccgtgtactgggaga	9	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100237162	A	A	100237162	3	1	84	1	0	0	0	0	1	0	0	0	308	855	30	3	687	3	ADH1B	4	100237162	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	105870	100237162	90917114	493	87100											
MTTP	4547	broad.mit.edu	37	chr4	100530153	100530153	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtataatacattgcacatGtctctctgtgtattcaagct	7	8	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100530153	A	A	100530153	1	1	84	0	1	0	0	0	0	0	0	0	10058	1392	48	4		4	MTTP	4	100530153	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	292991	100530153	90624123	494	87101											
BANK1	55024	broad.mit.edu	37	chr4	102994847	102994847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttttttcagcttcctGctcgaccccaagttgaaaag	6	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102994847	T	T	102994847	3	4	84	1	0	0	0	0	1	0	0	0	1314	1319	46	3	2367	3	BANK1	4	102994847	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2464694	102994847	88159429	495	87102											
NHEDC1	150159	broad.mit.edu	37	chr4	103832641	103832641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaaaacaattcctgccaGcagactaatacatacgttcc	4	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103832641	T	T	103832641	3	4	84	1	0	0	0	0	1	0	0	0	10495	962	34	3	784	3	NHEDC1	4	103832641	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	837794	103832641	87321635	496	87103											
CENPE	1062	broad.mit.edu	37	chr4	104066634	104066634	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcataattcagttagctactCcaaacccacccatttcctcc	2	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104066634	A	A	104066634	1	1	84	0	1	0	0	0	0	0	0	0	3260	870	30	3		3	CENPE	4	104066634	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	233993	104066634	87087642	497	87104											
CENPE	1062	broad.mit.edu	37	chr4	104098240	104098240	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaattatgtcatatagatCtgtattcaaacataataaaa	3	5	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104098240	A	A	104098240	1	1	84	0	1	0	0	0	0	0	0	0	3260	928	32	3		3	CENPE	4	104098240	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	31606	104098240	87056036	498	87105											
TBCK	93627	broad.mit.edu	37	chr4	107216182	107216182	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaccaaacccctgcagTttaaacaaaatgcctttttg	5	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107216182	A	A	107216182	1	1	84	0	1	0	0	0	0	0	0	0	15758	1740	60	5		5	TBCK	4	107216182	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3117942	107216182	83938094	499	87106											
SGMS2	166929	broad.mit.edu	37	chr4	108824444	108824444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacgattgatttctggtgGtggattgtccataactggat	11	6	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108824444	T	T	108824444	3	4	84	1	0	0	0	0	1	0	0	0	14328	1261	44	3	639	3	SGMS2	4	108824444	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1608262	108824444	82329832	500	87107											
ANK2	287	broad.mit.edu	37	chr4	114223920	114223920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaatgatttttgtttttcCagactattacagaaaaacac	4	6	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114223920	A	A	114223920	1	1	84	0	1	0	0	0	0	0	0	0	621	609	21	2		2	ANK2	4	114223920	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5399476	114223920	76930356	501	87108											
ANK2	287	broad.mit.edu	37	chr4	114260527	114260527	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgatatgttaccctccaAaaaaactgccctttgtttta	4	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114260527	G	G	114260527	1	3	84	0	1	0	0	0	0	0	0	0	621	29	1	5		5	ANK2	4	114260527	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	36607	114260527	76893749	502	87109											
ANK2	287	broad.mit.edu	37	chr4	114280094	114280094	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaccaaagatacttacatcCcgattgccagttaagagcag	8	10	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114280094	T	T	114280094	2	4	84	1	0	0	0	0	0	0	0	1	621	610	22	4		4	ANK2	4	114280094	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	19567	114280094	76874182	503	87110											
SYNPO2	171024	broad.mit.edu	37	chr4	119951624	119951624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggtcttggccatgttcCccaacagaatggcttcagtg	10	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119951624	A	A	119951624	3	1	84	1	0	0	0	0	1	0	0	0	15576	623	22	2	1708	2	SYNPO2	4	119951624	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5671530	119951624	71202652	504	87111											
KIAA1109	84162	broad.mit.edu	37	chr4	123159438	123159438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggaaagtccttcatctGttgctgatgaccatttggtt	9	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123159438	T	T	123159438	3	4	84	1	0	0	0	0	1	0	0	0	8278	1377	48	3	3868	3	KIAA1109	4	123159438	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3207814	123159438	67994838	505	87112											
ADAD1	132612	broad.mit.edu	37	chr4	123301461	123301461	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaggatggccagtaagttCtgtcgagtctctggtttaaa	11	7	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123301461	A	A	123301461	1	1	84	0	1	0	0	0	0	0	0	0	231	928	32	3		3	ADAD1	4	123301461	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	142023	123301461	67852815	506	87113											
SPATA5	166378	broad.mit.edu	37	chr4	123844193	123844193	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactcaggggattacggcgCaggggcggaccctcgctgac	15	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123844193	A	A	123844193	1	1	84	0	1	0	0	0	0	0	0	0	15127	725	25	3		3	SPATA5	4	123844193	5'Flank	SNP	C	TCGA-17-Z055-01A-01W-0747-08	542732	123844193	67310083	507	87114											
FAT4	79633	broad.mit.edu	37	chr4	126337718	126337718	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagaacttggagtaacacAgagtctggatcgggaaacaa	13	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126337718	G	G	126337718	3	3	84	1	0	0	0	0	1	0	0	0	5749	188	7	5	6981	5	FAT4	4	126337718	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2493525	126337718	64816558	508	87115											
FAT4	79633	broad.mit.edu	37	chr4	126373264	126373264	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacagtcacgagcaacatccGagttttctttgctggatttt	8	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126373264	A	A	126373264	3	1	84	1	0	0	0	0	1	0	0	0	5749	1058	37	4	11127	4	FAT4	4	126373264	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	35546	126373264	64781012	509	87116											
INTU	27152	broad.mit.edu	37	chr4	128565197	128565197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatctgctatgaagagcgGtcaggtactcattggtaagt	14	6	3	2	rs146720875		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128565197	T	T	128565197	3	4	84	1	0	0	0	0	1	0	0	0	7856	1261	44	3	674	3	INTU	4	128565197	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2191933	128565197	62589079	510	87117											
PGRMC2	10424	broad.mit.edu	37	chr4	129208520	129208520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttcccctccccttccaaCtcctcacccgggccgtagaa	5	21	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129208520	A	A	129208520	1	1	84	0	1	0	0	0	0	0	0	0	11902	580	20	3		3	PGRMC2	4	129208520	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	643323	129208520	61945756	511	87118											
TBC1D9	23158	broad.mit.edu	37	chr4	141545554	141545554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccaacaactaccaagaaaTggttcagaagaaaaaagtag	7	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141545554	C	C	141545554	1	2	84	0	1	0	0	0	0	0	0	0	15749	1479	51	5		5	TBC1D9	4	141545554	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	12337034	141545554	49608722	512	87119											
NR3C2	4306	broad.mit.edu	37	chr4	149357133	149357133	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggctagacacagaggatcTcagagtgacattattgggac	13	7	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149357133	C	C	149357133	3	2	84	1	0	0	0	0	1	0	0	0	10726	1559	54	5	2106	5	NR3C2	4	149357133	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	7811579	149357133	41797143	513	87120											
TRIM2	23321	broad.mit.edu	37	chr4	154229449	154229449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtccgaaataatgtccttCtccagatcagtcttgtacat	7	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154229449	T	T	154229449	1	4	84	0	1	0	0	0	0	0	0	0	16618	928	32	4		4	TRIM2	4	154229449	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4872316	154229449	36924827	514	87121											
FGB	2244	broad.mit.edu	37	chr4	155490722	155490722	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaccaggatgggacccacaGaacttttgatagaaatggag	11	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155490722	C	C	155490722	3	2	84	1	0	0	0	0	1	0	0	0	5888	943	33	4	1041	4	FGB	4	155490722	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1261273	155490722	35663554	515	87122											
RAPGEF2	9693	broad.mit.edu	37	chr4	160251431	160251431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtatatgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtata	16	0	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160251431	T	T	160251431	1	4	84	0	1	0	0	0	0	0	0	0	13152	1392	48	3		3	RAPGEF2	4	160251431	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4760709	160251431	30902845	516	87123											
KLHL2	11275	broad.mit.edu	37	chr4	166160028	166160028	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtttacactgcagaaattCaggttacagaagaaaatgta	8	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166160028	T	T	166160028	4	4	84	1	0	0	0	0	0	1	0	0	8445	827	29	4	414	4	KLHL2	4	166160028	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5908597	166160028	24994248	517	87124											
SPOCK3	50859	broad.mit.edu	37	chr4	167713293	167713293	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttcataacagatacagTagcaatgatcaaatttagaa	5	6	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167713293	A	A	167713293	1	1	84	0	1	0	0	0	0	0	0	0	15199	1653	57	5		5	SPOCK3	4	167713293	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1553265	167713293	23440983	518	87125											
GPM6A	2823	broad.mit.edu	37	chr4	176555945	176555945	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgattcataagtcaccttaCatatcattgatgagaagcac	7	8	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176555945	A	A	176555945	1	1	84	0	1	0	0	0	0	0	0	0	6680	493	17	3		3	GPM6A	4	176555945	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	8842652	176555945	14598331	519	87126											
ASB5	140458	broad.mit.edu	37	chr4	177136781	177136781	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagaaattcttcagtaaCgttggcagctggagttgtgg	13	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177136781	A	A	177136781	2	1	84	1	0	0	0	0	0	0	0	1	1030	523	19	3		3	ASB5	4	177136781	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	580836	177136781	14017495	520	87127											
ASB5	140458	broad.mit.edu	37	chr4	177142500	177142500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccccacacacctcacccCaggcttcccttgtggtgtca	6	20	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177142500	A	A	177142500	1	1	84	0	1	0	0	0	0	0	0	0	1030	609	21	2		2	ASB5	4	177142500	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5719	177142500	14011776	521	87128											
ODZ3	55714	broad.mit.edu	37	chr4	183245292	183245292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgggtacccacacagaagtCctacagttccagcgagacat	9	14	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183245292	A	A	183245292	3	1	84	1	0	0	0	0	1	0	0	0	10931	855	30	3	121	3	ODZ3	4	183245292	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6102792	183245292	7908984	522	87129											
ODZ3	55714	broad.mit.edu	37	chr4	183657893	183657893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatagtgaatatgtgctaCataaatatattttatctaat	4	3	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183657893	A	A	183657893	1	1	84	0	1	0	0	0	0	0	0	0	10931	493	17	3		3	ODZ3	4	183657893	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	412601	183657893	7496383	523	87130											
DCTD	1635	broad.mit.edu	37	chr4	183815714	183815714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catactacagcctttcacatCggtcgaatttttgttcatga	6	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183815714	A	A	183815714	3	1	84	1	0	0	0	0	1	0	0	0	4338	884	31	3	259	3	DCTD	4	183815714	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	157821	183815714	7338562	524	87131											
FAM149A	25854	broad.mit.edu	37	chr4	187073249	187073249	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggttttccaagcacccAcccctgacctgcctcgatac	9	16	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187073249	C	C	187073249	1	2	84	0	1	0	0	0	0	0	0	0	5501	174	6	5		5	FAM149A	4	187073249	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3257535	187073249	4081027	525	87132											
TRIML2	205860	broad.mit.edu	37	chr4	189026363	189026363	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcagcctcttgtatccCacacaccatgtgatgtttgt	7	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189026363	A	A	189026363	3	1	84	1	0	0	0	0	1	0	0	0	16676	594	21	2	1181	2	TRIML2	4	189026363	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1953114	189026363	2127913	526	87133											
TERT	7015	broad.mit.edu	37	chr5	1293449	1293449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctcctgcgcagccaagCgcagtcccgcacgctcatct	11	17	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1293449	A	A	1293449	3	1	84	1	0	0	0	0	1	0	0	0	15886	768	27	3	1906	3	TERT	5	1293449	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08		1293449	179621811	527	87134											
IRX2	153572	broad.mit.edu	37	chr5	2748643	2748643	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgttcaagttcccgtagttTgtgtagttgccgtagaaggg	14	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2748643	A	A	2748643	2	1	84	1	0	0	0	0	0	0	0	1	7914	1799	63	5		5	IRX2	5	2748643	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1455194	2748643	178166617	528	87135											
ADAMTS16	170690	broad.mit.edu	37	chr5	5182313	5182313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctggggccagtgaggtcCtggtgacctcaaggacatgg	15	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5182313	A	A	5182313	3	1	84	1	0	0	0	0	1	0	0	0	261	680	24	2	672	2	ADAMTS16	5	5182313	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2433670	5182313	175732947	529	87136											
ADCY2	108	broad.mit.edu	37	chr5	7626456	7626456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtttcatcttacatccaCattattttagtcattattaa	3	7	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7626456	A	A	7626456	1	1	84	0	1	0	0	0	0	0	0	0	294	493	17	3		3	ADCY2	5	7626456	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2444143	7626456	173288804	530	87137											
ADCY2	108	broad.mit.edu	37	chr5	7690715	7690715	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaattcccaaactggccttCctacaaatcagtgaggatct	7	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7690715	A	A	7690715	1	1	84	0	1	0	0	0	0	0	0	0	294	870	30	3		3	ADCY2	5	7690715	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	64259	7690715	173224545	531	87138											
SEMA5A	9037	broad.mit.edu	37	chr5	9119016	9119016	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgccacacataagcttaGgcagatccaaaactaaaacc	7	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9119016	C	C	9119016	1	2	84	0	1	0	0	0	0	0	0	0	14150	1015	35	4		4	SEMA5A	5	9119016	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1428301	9119016	171796244	532	87139											
SEMA5A	9037	broad.mit.edu	37	chr5	9227081	9227081	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagttctgacattcctccTgagggaaaataaataaatta	7	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9227081	A	A	9227081	5	1	84	1	0	0	0	0	0	0	1	0	14150	1594	55	5	2960	5	SEMA5A	5	9227081	Splice_Site	SNP	T	TCGA-17-Z055-01A-01W-0747-08	108065	9227081	171688179	533	87140											
CTNND2	1501	broad.mit.edu	37	chr5	11384837	11384837	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctcctgcgagtgcttgcTgtactgctcggacgcgtgga	14	12	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11384837	A	A	11384837	3	1	84	1	0	0	0	0	1	0	0	0	4054	1580	55	5	2624	5	CTNND2	5	11384837	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2157756	11384837	169530423	534	87141											
CTNND2	1501	broad.mit.edu	37	chr5	11732209	11732209	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaacaatttttaaaatGtccccaaacgcatatcacaa	3	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11732209	A	A	11732209	1	1	84	0	1	0	0	0	0	0	0	0	4054	1392	48	4		4	CTNND2	5	11732209	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	347372	11732209	169183051	535	87142											
DNAH5	1767	broad.mit.edu	37	chr5	13820439	13820439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccccaggcattgacCttggctgccctgtacctgtc	11	16	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13820439	A	A	13820439	1	1	84	0	1	0	0	0	0	0	0	0	4644	696	24	2		2	DNAH5	5	13820439	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2088230	13820439	167094821	536	87143											
TRIO	7204	broad.mit.edu	37	chr5	14420035	14420035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtgcggacaactgaccGctccccagcggcagaaggcc	13	15	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14420035	T	T	14420035	3	4	84	1	0	0	0	0	1	0	0	0	16677	1087	38	3	5242	3	TRIO	5	14420035	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	599596	14420035	166495225	537	87144											
FBXL7	23194	broad.mit.edu	37	chr5	15928267	15928267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccttcctgcccaccaaCcagctgtgccgctgcgcgcg	9	19	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928267	A	A	15928267	3	1	84	1	0	0	0	0	1	0	0	0	5781	506	18	3	406	3	FBXL7	5	15928267	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1508232	15928267	164986993	538	87145											
FBXL7	23194	broad.mit.edu	37	chr5	15937086	15937086	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgacacgggcctggagtgcCtggccctgaactgcttcaac	12	15	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15937086	T	T	15937086	2	4	84	1	0	0	0	0	0	0	0	1	5781	680	24	4		4	FBXL7	5	15937086	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	8819	15937086	164978174	539	87146											
MYO10	4651	broad.mit.edu	37	chr5	16676284	16676284	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaataaagcaagcaagCttattgtaagaaacctgtat	6	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16676284	T	T	16676284	1	4	84	0	1	0	0	0	0	0	0	0	10156	812	28	4		4	MYO10	5	16676284	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	739198	16676284	164238976	540	87147											
MYO10	4651	broad.mit.edu	37	chr5	16680173	16680173	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagcttggtgtagagccgGtaacagtgcttgcgcccgta	14	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16680173	A	A	16680173	2	1	84	1	0	0	0	0	0	0	0	1	10156	1256	44	4		4	MYO10	5	16680173	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3889	16680173	164235087	541	87148											
CDH12	1010	broad.mit.edu	37	chr5	21755777	21755777	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtagaaaaattgcttccAcattacaagacaggatggtg	10	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21755777	T	T	21755777	3	4	84	1	0	0	0	0	1	0	0	0	3128	159	6	5	584	5	CDH12	5	21755777	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	5075604	21755777	159159483	542	87149											
CDH12	1010	broad.mit.edu	37	chr5	21760810	21760810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagttgagattaaagtcGgtcatcagtttcaaagagga	11	5	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21760810	T	T	21760810	1	4	84	0	1	0	0	0	0	0	0	0	3128	1131	39	1		1	CDH12	5	21760810	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5033	21760810	159154450	543	87150											
TARS	6897	broad.mit.edu	37	chr5	33455692	33455692	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatactttcttctccttcagGggtgtgtctagcaatgattt	8	8	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33455692	T	T	33455692	2	4	84	1	0	0	0	0	0	0	0	1	15678	1246	43	2		2	TARS	5	33455692	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	11694882	33455692	147459568	544	87151											
SLC45A2	51151	broad.mit.edu	37	chr5	33964047	33964047	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacatgacctggaattctgTacccaacagtcttcccagct	7	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33964047	C	C	33964047	3	2	84	1	0	0	0	0	1	0	0	0	14755	1638	57	5	990	5	SLC45A2	5	33964047	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	508355	33964047	146951213	545	87152											
UGT3A1	133688	broad.mit.edu	37	chr5	35965803	35965803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagacaaggggcttggtagCccaaaatccaaagagccgaa	11	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35965803	A	A	35965803	2	1	84	1	0	0	0	0	0	0	0	1	17089	726	26	3		3	UGT3A1	5	35965803	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2001756	35965803	144949457	546	87153											
UGT3A1	133688	broad.mit.edu	37	chr5	35988667	35988667	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccacctagaaacaatgcAcaatgtcttttgtaaagatg	6	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35988667	T	T	35988667	1	4	84	0	1	0	0	0	0	0	0	0	17089	174	6	5		5	UGT3A1	5	35988667	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	22864	35988667	144926593	547	87154											
C9	735	broad.mit.edu	37	chr5	39341788	39341788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtccaaagacctcaatGcttcttgaacgaaactgcac	6	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39341788	T	T	39341788	3	4	84	1	0	0	0	0	1	0	0	0	2469	1310	46	3	1517	3	C9	5	39341788	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3353121	39341788	141573472	548	87155											
DAB2	1601	broad.mit.edu	37	chr5	39383131	39383131	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagatttgagagaatcaaaCgaagaaggtgtcgattggtc	14	4	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39383131	A	A	39383131	2	1	84	1	0	0	0	0	0	0	0	1	4251	523	19	3		3	DAB2	5	39383131	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	41343	39383131	141532129	549	87156											
C7	730	broad.mit.edu	37	chr5	40909774	40909774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcttttcaaatgaacggGggtaatataaatgtaattta	7	4	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40909774	T	T	40909774	1	4	84	0	1	0	0	0	0	0	0	0	2400	1247	43	2		2	C7	5	40909774	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1526643	40909774	140005486	550	87157											
HCN1	348980	broad.mit.edu	37	chr5	45262380	45262380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttggtgttgtgaagcgcCtgcgtgctcttgtgcacttc	14	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45262380	A	A	45262380	3	1	84	1	0	0	0	0	1	0	0	0	7062	680	24	2	360	2	HCN1	5	45262380	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4352606	45262380	135652880	551	87158											
HCN1	348980	broad.mit.edu	37	chr5	45262920	45262920	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatttttctttcctgtcagCaaaagaaagataggcactta	7	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45262920	G	G	45262920	1	3	84	0	1	0	0	0	0	0	0	0	7062	725	25	4		4	HCN1	5	45262920	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	540	45262920	135652340	552	87159											
PARP8	79668	broad.mit.edu	37	chr5	50124304	50124304	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgttaggtttaacttgCaaaagaggaagcatgtgagt	12	4	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50124304	T	T	50124304	1	4	84	0	1	0	0	0	0	0	0	0	11559	725	25	4		4	PARP8	5	50124304	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4861384	50124304	130790956	553	87160											
PPAP2A	8611	broad.mit.edu	37	chr5	54786716	54786716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtactgtggatttaccccCgccccaactccatgcttcat	6	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54786716	A	A	54786716	1	1	84	0	1	0	0	0	0	0	0	0	12386	667	23	1		1	PPAP2A	5	54786716	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4662412	54786716	126128544	554	87161											
DDX4	54514	broad.mit.edu	37	chr5	55094236	55094236	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaggataagttaaagaatAatcttttgtttttcaaggtt	9	2	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55094236	C	C	55094236	1	2	84	0	1	0	0	0	0	0	0	0	4393	377	13	5		5	DDX4	5	55094236	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	307520	55094236	125821024	555	87162											
DEPDC1B	55789	broad.mit.edu	37	chr5	59943224	59943224	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcagtcatggcacttaCcatcacaactggcctcactg	6	14	5	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59943224	A	A	59943224	5	1	84	1	0	0	0	0	0	0	1	0	4480	521	18	3	1174	3	DEPDC1B	5	59943224	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4848988	59943224	120972036	556	87163											
FLJ37543	285668	broad.mit.edu	37	chr5	60982794	60982794	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgccccgcactgcgatagAgacagagttcaagcagaatg	11	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60982794	T	T	60982794	3	4	84	1	0	0	0	0	1	0	0	0	5986	304	11	5	128	5	FLJ37543	5	60982794	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1039570	60982794	119932466	557	87164											
ZNF366	167465	broad.mit.edu	37	chr5	71756328	71756328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtgcggcttcacctcGctgtgctgcatcatgtggcg	13	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71756328	T	T	71756328	3	4	84	1	0	0	0	0	1	0	0	0	17996	1078	38	3	1254	3	ZNF366	5	71756328	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	10773534	71756328	109158932	558	87165											
SV2C	22987	broad.mit.edu	37	chr5	75594529	75594529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaagacagtccatagtggGgcattccatctctaaaacta	7	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75594529	T	T	75594529	1	4	84	0	1	0	0	0	0	0	0	0	15537	1247	43	2		2	SV2C	5	75594529	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3838201	75594529	105320731	559	87166											
MSH3	4437	broad.mit.edu	37	chr5	80074567	80074567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgagccgctttcactctCcttttattgtagaaaattac	6	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80074567	A	A	80074567	3	1	84	1	0	0	0	0	1	0	0	0	9965	855	30	3	2413	3	MSH3	5	80074567	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4480038	80074567	100840693	560	87167											
CCNH	902	broad.mit.edu	37	chr5	86705175	86705175	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttgaaatacatacaagcCgtaccctaagggttaaaaaa	7	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86705175	A	A	86705175	2	1	84	1	0	0	0	0	0	0	0	1	2955	639	23	1		1	CCNH	5	86705175	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6630608	86705175	94210085	561	87168											
GPR98	84059	broad.mit.edu	37	chr5	90052446	90052446	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttatgtttcatgttactaGagtgagatgaactttcattt	7	4	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90052446	C	C	90052446	3	2	84	1	0	0	0	0	1	0	0	0	6787	956	33	4	11978	4	GPR98	5	90052446	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3347271	90052446	90862814	562	87169											
C5orf36	285600	broad.mit.edu	37	chr5	93928875	93928875	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgaggcccacgatccgCtagttgaagcactagttaca	11	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93928875	T	T	93928875	1	4	84	0	1	0	0	0	0	0	0	0	2318	812	28	4		4	C5orf36	5	93928875	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3876429	93928875	86986385	563	87170											
FER	2241	broad.mit.edu	37	chr5	108516633	108516633	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accacattttttttttaatgGtaaaaatgaacggcatcagc	6	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108516633	A	A	108516633	1	1	84	0	1	0	0	0	0	0	0	0	5870	1276	44	4		4	FER	5	108516633	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	14587758	108516633	72398627	564	87171											
STARD4	134429	broad.mit.edu	37	chr5	110842098	110842098	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagaaaaataaaaacattaTatggtaataattgcataggt	6	3	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110842098	C	C	110842098	1	2	84	0	1	0	0	0	0	0	0	0	15377	1421	49	5		5	STARD4	5	110842098	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2325465	110842098	70073162	565	87172											
CCDC112	153733	broad.mit.edu	37	chr5	114607061	114607061	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagtaattttaacttaaacTggcgctggcgttctttctga	9	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114607061	A	A	114607061	3	1	84	1	0	0	0	0	1	0	0	0	2775	1580	55	5	424	5	CCDC112	5	114607061	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3764963	114607061	66308199	566	87173											
TMED7-TICAM2	100302736	broad.mit.edu	37	chr5	114916758	114916758	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcttcttcaaacatctcttCcacgctctgagctccctcct	3	17	5	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114916758	G	G	114916758	3	3	84	1	0	0	0	0	1	0	0	0	16133	864	30	4		4	TMED7-TICAM2	5	114916758	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	309697	114916758	65998502	567	87174											
LMNB1	4001	broad.mit.edu	37	chr5	126140540	126140540	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatgaagcagcactgaattcGaaagatgcagctcttgctac	9	9	1	3	rs34224885	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126140540	T	T	126140540	2	4	84	1	0	0	0	0	0	0	0	1	8923	1045	37	3		3	LMNB1	5	126140540	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	11223782	126140540	54774720	568	87175											
FBN2	2201	broad.mit.edu	37	chr5	127622342	127622342	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgcagttaagatgatgtggGagtagtgccattaatgaggc	14	4	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127622342	A	A	127622342	1	1	84	0	1	0	0	0	0	0	0	0	5760	1189	41	4		4	FBN2	5	127622342	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1481802	127622342	53292918	569	87176											
FBN2	2201	broad.mit.edu	37	chr5	127671773	127671773	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacattttccatttctgcAgagattgtcactcagggagc	8	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127671773	C	C	127671773	3	2	84	1	0	0	0	0	1	0	0	0	5760	188	7	5	5259	5	FBN2	5	127671773	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	49431	127671773	53243487	570	87177											
FSTL4	23105	broad.mit.edu	37	chr5	132763527	132763527	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatctggccatgtggctccAgagaagtgtgagggtttggg	16	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132763527	G	G	132763527	1	3	84	0	1	0	0	0	0	0	0	0	6139	203	7	5		5	FSTL4	5	132763527	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	5091754	132763527	48151733	571	87178											
TRPC7	57113	broad.mit.edu	37	chr5	135602028	135602028	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttaacaccttcaaatcGgtcagatgcattcacaacta	6	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135602028	T	T	135602028	2	4	84	1	0	0	0	0	0	0	0	1	16709	1124	39	1		1	TRPC7	5	135602028	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2838501	135602028	45313232	572	87179											
SPOCK1	6695	broad.mit.edu	37	chr5	136448123	136448123	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaagacaagaaaaccaaCcttggatgtgtaggagtggc	11	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136448123	A	A	136448123	5	1	84	1	0	0	0	0	0	0	1	0	15197	521	18	3	872	3	SPOCK1	5	136448123	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	846095	136448123	44467137	573	87180											
CDC25C	995	broad.mit.edu	37	chr5	137661711	137661711	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagagaggctactcactGggctacatttcattaggtgc	10	8	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137661711	A	A	137661711	3	1	84	1	0	0	0	0	1	0	0	0	3094	1362	47	4	1093	4	CDC25C	5	137661711	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1213588	137661711	43253549	574	87181											
KDM3B	51780	broad.mit.edu	37	chr5	137710732	137710732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatttgtttgaattgctGtttttttattcccaagttct	7	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137710732	T	T	137710732	1	4	84	0	1	0	0	0	0	0	0	0	8197	1392	48	3		3	KDM3B	5	137710732	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	49021	137710732	43204528	575	87182											
CTNNA1	1495	broad.mit.edu	37	chr5	138160263	138160263	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcagatggctgcagctagAggaatcctgcagaagaacgt	13	8	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138160263	G	G	138160263	2	3	84	1	0	0	0	0	0	0	0	1	4046	301	11	5		5	CTNNA1	5	138160263	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	449531	138160263	42754997	576	87183											
TMCO6	55374	broad.mit.edu	37	chr5	140021877	140021877	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgaaacaggccaagcccaGtgcttttgttgcctgttctc	9	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140021877	C	C	140021877	1	2	84	0	1	0	0	0	0	0	0	0	16123	1044	36	4		4	TMCO6	5	140021877	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1861614	140021877	40893383	577	87184											
PCDHA5	56143	broad.mit.edu	37	chr5	140203558	140203558	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgaggccgtgtgcacacGgggcaagcccactctgttgt	13	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140203558	T	T	140203558	3	4	84	1	0	0	0	0	1	0	0	0	11621	1116	39	1	2200	1	PCDHA5	5	140203558	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	181681	140203558	40711702	578	87185											
PCDHA12	56137	broad.mit.edu	37	chr5	140256781	140256781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggctggcagcgcaggagGcgcagttagcgagttggtac	17	10	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140256781	T	T	140256781	3	4	84	1	0	0	0	0	1	0	0	0	11616	1203	42	3	1726	3	PCDHA12	5	140256781	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	53223	140256781	40658479	579	87186											
PCDHA13	56136	broad.mit.edu	37	chr5	140263035	140263035	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttgacgccgcatgtcccCttcaagctggtgtccaccta	8	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140263035	T	T	140263035	2	4	84	1	0	0	0	0	0	0	0	1	11617	668	24	4		4	PCDHA13	5	140263035	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6254	140263035	40652225	580	87187											
PCDHAC2	56134	broad.mit.edu	37	chr5	140347030	140347030	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagccttgcaccacctggttCtcacagccgtggatgggggc	13	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140347030	T	T	140347030	3	4	84	1	0	0	0	0	1	0	0	0	11627	913	32	4	681	4	PCDHAC2	5	140347030	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	83995	140347030	40568230	581	87188											
PCDHAC2	56134	broad.mit.edu	37	chr5	140347941	140347941	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaacagtgccagtggcagCctttatgctgtcaactcctt	8	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140347941	T	T	140347941	2	4	84	1	0	0	0	0	0	0	0	1	11627	738	26	4		4	PCDHAC2	5	140347941	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	911	140347941	40567319	582	87189											
PCDHB11	56125	broad.mit.edu	37	chr5	140580003	140580003	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgctctggatggtgggtCccctcccaggtctggaactg	13	13	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140580003	T	T	140580003	3	4	84	1	0	0	0	0	1	0	0	0	11630	855	30	4	658	4	PCDHB11	5	140580003	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	232062	140580003	40335257	583	87190											
PCDHB11	56125	broad.mit.edu	37	chr5	140580647	140580647	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatacccaggctgaaaaccGagcacaacacaactgtgttg	10	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140580647	A	A	140580647	3	1	84	1	0	0	0	0	1	0	0	0	11630	1059	37	4	1302	4	PCDHB11	5	140580647	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	644	140580647	40334613	584	87191											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736531	140736531	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagattccggctacctggtGaccaaagtggtggcagtgga	15	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140736531	T	T	140736531	2	4	84	1	0	0	0	0	0	0	0	1	11650	1277	45	3		3	PCDHGA4	5	140736531	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	155884	140736531	40178729	585	87192											
PCDHGA9	56107	broad.mit.edu	37	chr5	140783487	140783487	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggaaatacaagctgaagAtggtgggggattgaaagggt	16	2	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140783487	G	G	140783487	3	3	84	1	0	0	0	0	1	0	0	0	11655	333	12	5	970	5	PCDHGA9	5	140783487	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	46956	140783487	40131773	586	87193											
PCDHGA9	56107	broad.mit.edu	37	chr5	140784705	140784705	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcatctgctgcgggctaccaGtgatgggttggctggtgtgc	17	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140784705	C	C	140784705	3	2	84	1	0	0	0	0	1	0	0	0	11655	1029	36	4	2188	4	PCDHGA9	5	140784705	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1218	140784705	40130555	587	87194											
PCDHGB6	56100	broad.mit.edu	37	chr5	140789537	140789537	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccggctacctagtgactAaggtggtagcggtggacgcc	15	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140789537	G	G	140789537	3	3	84	1	0	0	0	0	1	0	0	0	11661	363	13	5	1770	5	PCDHGB6	5	140789537	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4832	140789537	40125723	588	87195											
DIAPH1	1729	broad.mit.edu	37	chr5	140961926	140961926	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgaatgatctcatgcttgtTccggctatcgtaactcctgt	9	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140961926	C	C	140961926	3	2	84	1	0	0	0	0	1	0	0	0	4558	1783	62	5	3269	5	DIAPH1	5	140961926	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	172389	140961926	39953334	589	87196											
ARAP3	64411	broad.mit.edu	37	chr5	141052924	141052924	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctgagcccctctcagccctCcctctccctcatctccatat	3	21	5	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141052924	G	G	141052924	1	3	84	0	1	0	0	0	0	0	0	0	842	870	30	4		4	ARAP3	5	141052924	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	90998	141052924	39862336	590	87197											
LARS	51520	broad.mit.edu	37	chr5	145523891	145523892	+	Missense_Mutation	DNP	CC	AA	AA													cctaaggtggcttcaaaattCctcctggtctcctcacagaa							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	145523892	AA	AA	145523891	3	1	84	1	0	0	0	0	1	0	0	0	8706	854	30	3	1913	3	LARS	5	145523891	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	4470967	145523891	35391369	591	87198											
RBM27	54439	broad.mit.edu	37	chr5	145610382	145610382	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgctcaccactctgaaaAcacaactgagagttggtcta	7	12	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145610382	T	T	145610382	3	4	84	1	0	0	0	0	1	0	0	0	13235	43	2	5	774	5	RBM27	5	145610382	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	86491	145610382	35304878	592	87199											
PPP2R2B	5521	broad.mit.edu	37	chr5	145969600	145969600	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccaagctgtatgcaagatCtttttgctaaagtccagact	8	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145969600	A	A	145969600	3	1	84	1	0	0	0	0	1	0	0	0	12486	912	32	3	93	3	PPP2R2B	5	145969600	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	359218	145969600	34945660	593	87200											
JAKMIP2	9832	broad.mit.edu	37	chr5	147016421	147016421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttcgagaaagatcactGtggagagccaagctgtgtcc	13	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147016421	T	T	147016421	1	4	84	0	1	0	0	0	0	0	0	0	8011	1392	48	3		3	JAKMIP2	5	147016421	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1046821	147016421	33898839	594	87201											
SPINK5	11005	broad.mit.edu	37	chr5	147510741	147510741	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttattcaagttggattaAggaactcaagaggttttctt	8	5	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147510741	C	C	147510741	1	2	84	0	1	0	0	0	0	0	0	0	15180	87	3	5		5	SPINK5	5	147510741	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	494320	147510741	33404519	595	87202											
HTR4	3360	broad.mit.edu	37	chr5	147888967	147888967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaactggagcattacccCttctgagtaatacaaatcaa	6	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147888967	A	A	147888967	1	1	84	0	1	0	0	0	0	0	0	0	7519	696	24	2		2	HTR4	5	147888967	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	378226	147888967	33026293	596	87203											
ARHGEF37	389337	broad.mit.edu	37	chr5	148999941	148999941	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctctacttcaggccgcacGaatacaatctggacatcccc	6	16	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148999941	T	T	148999941	4	4	84	1	0	0	0	0	0	1	0	0	908	1059	37	3	945	3	ARHGEF37	5	148999941	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1110974	148999941	31915319	597	87204											
PDE6A	5145	broad.mit.edu	37	chr5	149283301	149283301	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaaggtgtgattaggcctGagagggtgcccagtgaagca	16	6	0	4	rs115655551	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149283301	T	T	149283301	1	4	84	0	1	0	0	0	0	0	0	0	11739	1305	45	3		3	PDE6A	5	149283301	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	283360	149283301	31631959	598	87205											
CSF1R	1436	broad.mit.edu	37	chr5	149449436	149449436	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgaaggctccctctcacCtgcagagatgggtatgaagg	14	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149449436	A	A	149449436	4	1	84	1	0	0	0	0	0	1	0	0	3966	695	24	2	1460	2	CSF1R	5	149449436	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	166135	149449436	31465824	599	87206											
GLRA1	2741	broad.mit.edu	37	chr5	151266251	151266251	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggagagatatctccagcagGaactaacagcttgtgttttg	11	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151266251	C	C	151266251	1	2	84	0	1	0	0	0	0	0	0	0	6518	1189	41	4		4	GLRA1	5	151266251	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1816815	151266251	29649009	600	87207											
GRIA1	2890	broad.mit.edu	37	chr5	153026471	153026471	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtcttctattcattaatcCttctcttctcttgtagtctg	4	11	6	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153026471	T	T	153026471	1	4	84	0	1	0	0	0	0	0	0	0	6833	696	24	4		4	GRIA1	5	153026471	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1760220	153026471	27888789	601	87208											
GRIA1	2890	broad.mit.edu	37	chr5	153029853	153029853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgcccacaaatcctgaCtgtctgtcatttctcttcta	7	12	4	1	rs72469632		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153029853	A	A	153029853	1	1	84	0	1	0	0	0	0	0	0	0	6833	580	20	3		3	GRIA1	5	153029853	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3382	153029853	27885407	602	87209											
GRIA1	2890	broad.mit.edu	37	chr5	153190693	153190693	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcggcagtggagagaatggtCgggtggtcagccatgacttc	17	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153190693	G	G	153190693	3	3	84	1	0	0	0	0	1	0	0	0	6833	875	31	4	2810	4	GRIA1	5	153190693	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	160840	153190693	27724567	603	87210											
HAND1	9421	broad.mit.edu	37	chr5	153857478	153857478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgatgacagcgcgaggccgGaccgaagaggaagggttcgt	17	9	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153857478	T	T	153857478	3	4	84	1	0	0	0	0	1	0	0	0	7015	1174	41	3	564	3	HAND1	5	153857478	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	666785	153857478	27057782	604	87211											
KIF4B	285643	broad.mit.edu	37	chr5	154396933	154396933	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagcaagatcctgaaagagAtgtgtgacatggagcaggtg	14	5	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154396933	T	T	154396933	3	4	84	1	0	0	0	0	1	0	0	0	8374	333	12	5	3516	5	KIF4B	5	154396933	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	539455	154396933	26518327	605	87212											
SGCD	6444	broad.mit.edu	37	chr5	155756486	155756486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagggttcagatttcctaGgcaaggagggggcaggctct	16	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155756486	T	T	155756486	1	4	84	0	1	0	0	0	0	0	0	0	14314	1015	35	2		2	SGCD	5	155756486	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1359553	155756486	25158774	606	87213											
SGCD	6444	broad.mit.edu	37	chr5	155885564	155885564	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgattctttccctcaaacCgcatatgtcaaaattcagca	5	11	4	1	rs11952317	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155885564	G	G	155885564	1	3	84	0	1	0	0	0	0	0	0	0	14314	667	23	4		4	SGCD	5	155885564	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	129078	155885564	25029696	607	87214											
ITK	3702	broad.mit.edu	37	chr5	156638470	156638470	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatagagtgtggtgtgagagCagctgatggctgatttctct	14	5	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156638470	G	G	156638470	1	3	84	0	1	0	0	0	0	0	0	0	7979	725	25	4		4	ITK	5	156638470	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	752906	156638470	24276790	608	87215											
ITK	3702	broad.mit.edu	37	chr5	156641394	156641394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaagtaaaagcttttggCctttaatcattgagggtgtc	9	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156641394	A	A	156641394	1	1	84	0	1	0	0	0	0	0	0	0	7979	754	26	3		3	ITK	5	156641394	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2924	156641394	24273866	609	87216											
ADAM19	8728	broad.mit.edu	37	chr5	156957829	156957829	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttacctaattcctcggcaAgtgctgagcgtgacgctgga	11	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156957829	G	G	156957829	2	3	84	1	0	0	0	0	0	0	0	1	240	59	3	5		5	ADAM19	5	156957829	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	316435	156957829	23957431	610	87217											
ATP10B	23120	broad.mit.edu	37	chr5	160025671	160025671	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaacagtggtcagaatgcAggcttctgaccccagcatac	11	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160025671	T	T	160025671	1	4	84	0	1	0	0	0	0	0	0	0	1121	203	7	5		5	ATP10B	5	160025671	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3067842	160025671	20889589	611	87218											
GABRA6	2559	broad.mit.edu	37	chr5	161119019	161119019	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgccaaaagtgtcatatgCcactgccatggattggttca	9	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161119019	G	G	161119019	3	3	84	1	0	0	0	0	1	0	0	0	6225	739	26	4	929	4	GABRA6	5	161119019	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1093348	161119019	19796241	612	87219											
GABRA1	2554	broad.mit.edu	37	chr5	161281137	161281137	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagaaatgtataatttagctAttgcttctctttatgttttt	5	4	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161281137	T	T	161281137	1	4	84	0	1	0	0	0	0	0	0	0	6220	464	16	5		5	GABRA1	5	161281137	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	162118	161281137	19634123	613	87220											
GABRA1	2554	broad.mit.edu	37	chr5	161281255	161281255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctagatggttatgacaatCgcctgagaccaggattggga	12	8	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161281255	A	A	161281255	3	1	84	1	0	0	0	0	1	0	0	0	6220	884	31	3	172	3	GABRA1	5	161281255	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	118	161281255	19634005	614	87221											
GABRA1	2554	broad.mit.edu	37	chr5	161322971	161322971	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtattggatggagtatgcAgaataataaggattcttttt	11	2	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161322971	T	T	161322971	1	4	84	0	1	0	0	0	0	0	0	0	6220	203	7	5		5	GABRA1	5	161322971	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	41716	161322971	19592289	615	87222											
GABRG2	2566	broad.mit.edu	37	chr5	161522611	161522611	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctgttttattagcatgTttgagagaaaatgtgatgtc	10	3	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161522611	C	C	161522611	1	2	84	0	1	0	0	0	0	0	0	0	6232	1740	60	5		5	GABRG2	5	161522611	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	199640	161522611	19392649	616	87223											
ODZ2	57451	broad.mit.edu	37	chr5	167181951	167181951	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcctattatgcttttccTtcccagctggagaaggcctc	8	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167181951	A	A	167181951	1	1	84	0	1	0	0	0	0	0	0	0	10930	1624	56	5		5	ODZ2	5	167181951	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5659340	167181951	13733309	617	87224											
ODZ2	57451	broad.mit.edu	37	chr5	167517651	167517651	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagggaacgccggagcAtacagaccttggttcagaat	11	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167517651	T	T	167517651	3	4	84	1	0	0	0	0	1	0	0	0	10930	217	8	5	1618	5	ODZ2	5	167517651	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	335700	167517651	13397609	618	87225											
ODZ2	57451	broad.mit.edu	37	chr5	167645245	167645245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaagtcagcatcattgCgggacgccccatgcactgcc	9	17	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167645245	A	A	167645245	3	1	84	1	0	0	0	0	1	0	0	0	10930	768	27	3	4412	3	ODZ2	5	167645245	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	127594	167645245	13270015	619	87226											
ODZ2	57451	broad.mit.edu	37	chr5	167645451	167645451	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttttagctggggcagcctcgGactgcgactgcaaaaacgat	12	10	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167645451	C	C	167645451	3	2	84	1	0	0	0	0	1	0	0	0	10930	1174	41	4	4618	4	ODZ2	5	167645451	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	206	167645451	13269809	620	87227											
ODZ2	57451	broad.mit.edu	37	chr5	167654902	167654902	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccacttacatttttccagatCaagttcggaacagctaccag	6	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167654902	G	G	167654902	3	3	84	1	0	0	0	0	1	0	0	0	10930	827	29	4	5358	4	ODZ2	5	167654902	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9451	167654902	13260358	621	87228											
WWC1	23286	broad.mit.edu	37	chr5	167882313	167882313	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggtctctggtgggtggcTgagactctgtggacactggt	17	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167882313	C	C	167882313	1	2	84	0	1	0	0	0	0	0	0	0	17538	1595	55	5		5	WWC1	5	167882313	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	227411	167882313	13032947	622	87229											
SLIT3	6586	broad.mit.edu	37	chr5	168119601	168119601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgctgggggcacgaagCcaggtcttacctgaatcctt	12	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168119601	A	A	168119601	1	1	84	0	1	0	0	0	0	0	0	0	14855	754	26	3		3	SLIT3	5	168119601	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	237288	168119601	12795659	623	87230											
CCDC99	54908	broad.mit.edu	37	chr5	169028388	169028388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgctctcgggggagaaGtttatcgattaccgcctcag	12	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169028388	T	T	169028388	3	4	84	1	0	0	0	0	1	0	0	0	2904	1029	36	3	1467	3	CCDC99	5	169028388	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	908787	169028388	11886872	624	87231											
DOCK2	1794	broad.mit.edu	37	chr5	169097588	169097588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacatcaaggaagtgacaGttgagaaaagaaggtatttg	11	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169097588	T	T	169097588	3	4	84	1	0	0	0	0	1	0	0	0	4727	1029	36	3	225	3	DOCK2	5	169097588	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	69200	169097588	11817672	625	87232											
DOCK2	1794	broad.mit.edu	37	chr5	169101390	169101390	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctcaggaaccttaccCaaggatgagctgaaggaact	9	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169101390	A	A	169101390	2	1	84	1	0	0	0	0	0	0	0	1	4727	581	21	2		2	DOCK2	5	169101390	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3802	169101390	11813870	626	87233											
DOCK2	1794	broad.mit.edu	37	chr5	169174291	169174291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctccttgaagtccccaCctcccactcctttttgtttt	3	17	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169174291	A	A	169174291	1	1	84	0	1	0	0	0	0	0	0	0	4727	522	18	3		3	DOCK2	5	169174291	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	72901	169174291	11740969	627	87234											
DOCK2	1794	broad.mit.edu	37	chr5	169230220	169230220	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accaggatgcggtgagtcctCctgatgatgtagatatcctg	12	9	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169230220	A	A	169230220	1	1	84	0	1	0	0	0	0	0	0	0	4727	870	30	3		3	DOCK2	5	169230220	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	55929	169230220	11685040	628	87235											
DOCK2	1794	broad.mit.edu	37	chr5	169506115	169506115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagcagcgtagtttttgcgGatgagaaagcagctgcagag	15	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169506115	T	T	169506115	3	4	84	1	0	0	0	0	1	0	0	0	4727	1174	41	3	5325	3	DOCK2	5	169506115	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	275895	169506115	11409145	629	87236											
LCP2	3937	broad.mit.edu	37	chr5	169697673	169697673	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttccatgcagcagtggcgAgcttgcctttgggctgctcg	13	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169697673	T	T	169697673	1	4	84	0	1	0	0	0	0	0	0	0	8764	319	11	5		5	LCP2	5	169697673	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	191558	169697673	11217587	630	87237											
KCNMB1	3779	broad.mit.edu	37	chr5	169810693	169810693	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcagtacctgctggttcTggtcccgagtgtcctccgtg	12	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169810693	C	C	169810693	3	2	84	1	0	0	0	0	1	0	0	0	8144	1580	55	5	287	5	KCNMB1	5	169810693	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	113020	169810693	11104567	631	87238											
KCNIP1	30820	broad.mit.edu	37	chr5	169931589	169931589	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgctgccatgggggccgtcAtgggcaccttctcatctctg	12	14	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169931589	T	T	169931589	3	4	84	1	0	0	0	0	1	0	0	0	8109	217	8	5	107	5	KCNIP1	5	169931589	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	120896	169931589	10983671	632	87239											
NPM1	4869	broad.mit.edu	37	chr5	170815046	170815046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggagcgaggccgagcgGggcctggtggcggtgagggt	23	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170815046	T	T	170815046	1	4	84	0	1	0	0	0	0	0	0	0	10682	1247	43	2		2	NPM1	5	170815046	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	883457	170815046	10100214	633	87240											
FBXW11	23291	broad.mit.edu	37	chr5	171326144	171326144	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatttttgcacataaaagGgtgaattttatctaaacatg	6	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171326144	A	A	171326144	1	1	84	0	1	0	0	0	0	0	0	0	5821	1247	43	4		4	FBXW11	5	171326144	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	511098	171326144	9589116	634	87241											
CPLX2	10814	broad.mit.edu	37	chr5	175306002	175306002	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagcggcaggaggcgctGcggcagcaggaggaggagcg	23	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175306002	A	A	175306002	2	1	84	1	0	0	0	0	0	0	0	1	3837	1306	46	4		4	CPLX2	5	175306002	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3979858	175306002	5609258	635	87242											
UNC5A	90249	broad.mit.edu	37	chr5	176289881	176289881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccaggcagggccaatccGggggaggcgagtttcggccc	18	13	0	0	rs149629964	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176289881	T	T	176289881	1	4	84	0	1	0	0	0	0	0	0	0	17117	1131	39	1		1	UNC5A	5	176289881	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	983879	176289881	4625379	636	87243											
HK3	3101	broad.mit.edu	37	chr5	176316631	176316631	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccacctgtcatcacaaaTggtccatggctcacctacaa	5	16	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176316631	C	C	176316631	1	2	84	0	1	0	0	0	0	0	0	0	7259	1479	51	5		5	HK3	5	176316631	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	26750	176316631	4598629	637	87244											
FAM153A	285596	broad.mit.edu	37	chr5	177158587	177158587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactctttgccagcgtggctGggtccacctgcatctagaga	11	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177158587	T	T	177158587	3	4	84	1	0	0	0	0	1	0	0	0	5506	1348	47	2	342	2	FAM153A	5	177158587	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	841956	177158587	3756673	638	87245											
PROP1	5626	broad.mit.edu	37	chr5	177421033	177421033	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatttaggttagggttataAtgcccaacattctatgatag	8	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177421033	G	G	177421033	1	3	84	0	1	0	0	0	0	0	0	0	12663	116	4	5		5	PROP1	5	177421033	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	262446	177421033	3494227	639	87246											
ADAMTS2	9509	broad.mit.edu	37	chr5	178552110	178552110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtagcggctgaatgcagCgcacggagcgcacctgcatg	15	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178552110	A	A	178552110	3	1	84	1	0	0	0	0	1	0	0	0	265	768	27	3	829	3	ADAMTS2	5	178552110	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1131077	178552110	2363150	640	87247											
MAPK9	5601	broad.mit.edu	37	chr5	179663483	179663483	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggatgaaatgtcattgatCgatgaagactgagaaggagt	13	3	1	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179663483	A	A	179663483	2	1	84	1	0	0	0	0	0	0	0	1	9379	871	31	3		3	MAPK9	5	179663483	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1111373	179663483	1251777	641	87248											
EXOC2	55770	broad.mit.edu	37	chr6	576816	576816	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacgctgtctgactgagaTggcccaacactgagggacgt	15	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	576816	C	C	576816	3	2	84	1	0	0	0	0	1	0	0	0	5344	1464	51	5	1583	5	EXOC2	6	576816	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08		576816	170538251	642	87249											
PRPF4B	8899	broad.mit.edu	37	chr6	4057172	4057172	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgaagattgtggttatagtCcaagctaaggtagccagccc	11	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4057172	G	G	4057172	1	3	84	0	1	0	0	0	0	0	0	0	12679	870	30	4		4	PRPF4B	6	4057172	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3480356	4057172	167057895	643	87250											
EEF1E1	9521	broad.mit.edu	37	chr6	8080125	8080125	+	Nonstop_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatggcatggacagcttctAgtgggaattagtatatagtc	12	5	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8080125	G	G	8080125	4	3	84	1	0	0	0	0	0	0	0	0	4967	433	15	5	45	5	EEF1E1	6	8080125	Nonstop_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4022953	8080125	163034942	644	87251											
TFAP2A	7020	broad.mit.edu	37	chr6	10411888	10411888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagcaagcctggagcgcCcggctgccccgccgcccgag	13	18	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10411888	A	A	10411888	1	1	84	0	1	0	0	0	0	0	0	0	15910	638	22	2		2	TFAP2A	6	10411888	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2331763	10411888	160703179	645	87252											
DCDC2	51473	broad.mit.edu	37	chr6	24357736	24357736	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccacgtaattgcccccgctCtggatctggtctagcttccg	10	15	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24357736	G	G	24357736	3	3	84	1	0	0	0	0	1	0	0	0	4318	912	32	4	1227	4	DCDC2	6	24357736	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	13945848	24357736	146757331	646	87253											
HIST1H1D	3007	broad.mit.edu	37	chr6	26234840	26234840	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagccgctttcttgttgaGtttgaaggagccagaagcac	13	8	1	3	rs144176369		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26234840	A	A	26234840	3	1	84	1	0	0	0	0	1	0	0	0	7192	1029	36	4	347	4	HIST1H1D	6	26234840	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1877104	26234840	144880227	647	87254											
HIST1H2AL	8332	broad.mit.edu	37	chr6	27833081	27833081	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactataagtagtggagctcTggtgaacttctctcggctgt	12	8	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27833081	C	C	27833081	1	2	84	0	1	0	0	0	0	0	0	0	7205	1595	55	5		5	HIST1H2AL	6	27833081	5'Flank	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1598241	27833081	143281986	648	87255											
TRIM31	11074	broad.mit.edu	37	chr6	30072021	30072021	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaaacaagcaccctGccatcatcaatcagaacagt	4	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30072021	C	C	30072021	1	2	84	0	1	0	0	0	0	0	0	0	16629	1334	46	4		4	TRIM31	6	30072021	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2238940	30072021	141043046	649	87256											
TRIM15	89870	broad.mit.edu	37	chr6	30136068	30136068	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaccatgtctgccttttatCccttgaagactcagatcgaa	6	11	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30136068	A	A	30136068	1	1	84	0	1	0	0	0	0	0	0	0	16614	870	30	3		3	TRIM15	6	30136068	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	64047	30136068	140978999	650	87257											
DDAH2	23564	broad.mit.edu	37	chr6	31695781	31695781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagcaaattaatcaccCctgttcccagtcctgctgtt	8	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31695781	A	A	31695781	1	1	84	0	1	0	0	0	0	0	0	0	4355	638	22	2		2	DDAH2	6	31695781	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1559713	31695781	139419286	651	87258											
CFB	629	broad.mit.edu	37	chr6	31912436	31912436	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagtgctgagattacagGcgtgagccactgcacccacc	10	14	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31912436	A	A	31912436	1	1	84	0	1	0	0	0	0	0	0	0	3308	1218	42	4		4	CFB	6	31912436	5'Flank	SNP	G	TCGA-17-Z055-01A-01W-0747-08	216655	31912436	139202631	652	87259											
NOTCH4	4855	broad.mit.edu	37	chr6	32164912	32164912	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccaactcgagttccttacActattaaccccactcgcaat	4	15	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32164912	G	G	32164912	1	3	84	0	1	0	0	0	0	0	0	0	10646	174	6	5		5	NOTCH4	6	32164912	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	252476	32164912	138950155	653	87260											
NOTCH4	4855	broad.mit.edu	37	chr6	32169165	32169166	+	Missense_Mutation	DNP	CC	AA	AA													ggagggcccccactctgggtCcccatcttcaggcctgcagt							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32169166	AA	AA	32169165	3	1	84	1	0	0	0	0	1	0	0	0	10646	855	30	3	2179	3	NOTCH4	6	32169165	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	4253	32169165	138945902	654	87261											
LHFPL5	222662	broad.mit.edu	37	chr6	35773618	35773618	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgacagcgtcaacacaccGcaggcaggctacttcggcct	12	15	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35773618	A	A	35773618	2	1	84	1	0	0	0	0	0	0	0	1	8840	1074	38	4		4	LHFPL5	6	35773618	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3604453	35773618	135341449	655	87262											
FTSJD2	23070	broad.mit.edu	37	chr6	37411795	37411795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctactacaagccttagtGggtctgatagtgagaccgag	11	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37411795	T	T	37411795	3	4	84	1	0	0	0	0	1	0	0	0	6151	1348	47	2	160	2	FTSJD2	6	37411795	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1638177	37411795	133703272	656	87263											
FTSJD2	23070	broad.mit.edu	37	chr6	37427269	37427269	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgcccgtcttcactgacCcagagcactcgtgtcccagc	9	16	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37427269	T	T	37427269	1	4	84	0	1	0	0	0	0	0	0	0	6151	638	22	4		4	FTSJD2	6	37427269	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	15474	37427269	133687798	657	87264											
BTBD9	114781	broad.mit.edu	37	chr6	38548125	38548125	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgatccaaatcataattTtgagtatcaccatctaataa	3	9	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38548125	C	C	38548125	2	2	84	1	0	0	0	0	0	0	0	1	1558	1838	64	5		5	BTBD9	6	38548125	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1120856	38548125	132566942	658	87265											
DNAH8	1769	broad.mit.edu	37	chr6	38705826	38705826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtattttgtctctaacagCaaagggaagaggtgtctcct	10	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38705826	A	A	38705826	1	1	84	0	1	0	0	0	0	0	0	0	4647	725	25	3		3	DNAH8	6	38705826	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	157701	38705826	132409241	659	87266											
DNAH8	1769	broad.mit.edu	37	chr6	38890849	38890849	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggatttgcttaatgacGctgatacgtgccggaaaaag	12	7	0	2	rs141263020	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38890849	C	C	38890849	3	2	84	1	0	0	0	0	1	0	0	0	4647	1087	38	4	10297	4	DNAH8	6	38890849	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	185023	38890849	132224218	660	87267											
GLP1R	2740	broad.mit.edu	37	chr6	39046137	39046137	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccctggggcattgtcaAgtacctctatgaggacgagg	13	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39046137	T	T	39046137	3	4	84	1	0	0	0	0	1	0	0	0	6516	72	3	5	893	5	GLP1R	6	39046137	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	155288	39046137	132068930	661	87268											
KCNK17	89822	broad.mit.edu	37	chr6	39272314	39272314	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccagtggtttactcccTgctgcatgagatgccccagt	11	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39272314	G	G	39272314	3	3	84	1	0	0	0	0	1	0	0	0	8134	1580	55	5	672	5	KCNK17	6	39272314	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	226177	39272314	131842753	662	87269											
KIF6	221458	broad.mit.edu	37	chr6	39513523	39513523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctttaaaaattctaatGgcattatctagttggttaac	7	5	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39513523	T	T	39513523	1	4	84	0	1	0	0	0	0	0	0	0	8378	1363	47	2		2	KIF6	6	39513523	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	241209	39513523	131601544	663	87270											
KIF6	221458	broad.mit.edu	37	chr6	39688440	39688440	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacaagagttagttcaataAtgaaacagaaatgaaaaaag	8	3	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39688440	T	T	39688440	1	4	84	0	1	0	0	0	0	0	0	0	8378	116	4	5		5	KIF6	6	39688440	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	174917	39688440	131426627	664	87271											
PGC	5225	broad.mit.edu	37	chr6	41712155	41712155	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggcctggctctggcagTagacagagggcacccacaag	14	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41712155	C	C	41712155	3	2	84	1	0	0	0	0	1	0	0	0	11880	1638	57	5	1195	5	PGC	6	41712155	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2023715	41712155	129402912	665	87272											
TRERF1	55809	broad.mit.edu	37	chr6	42225853	42225853	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggcttctgttctaaagAgtaattgacttttccttacg	8	8	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42225853	G	G	42225853	1	3	84	0	1	0	0	0	0	0	0	0	16599	319	11	5		5	TRERF1	6	42225853	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	513698	42225853	128889214	666	87273											
UBR2	23304	broad.mit.edu	37	chr6	42620053	42620053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagatagactttcttctGtactgctgctactttcgtgg	9	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42620053	T	T	42620053	1	4	84	0	1	0	0	0	0	0	0	0	17028	1392	48	3		3	UBR2	6	42620053	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	394200	42620053	128495014	667	87274											
CUL9	23113	broad.mit.edu	37	chr6	43152140	43152140	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcattcgacagaggcctgGgcatgacgggcatcctgaat	12	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43152140	A	A	43152140	3	1	84	1	0	0	0	0	1	0	0	0	4094	1232	43	4	94	4	CUL9	6	43152140	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	532087	43152140	127962927	668	87275											
CUL9	23113	broad.mit.edu	37	chr6	43167157	43167157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaagggcagcatctgggGcaccaactccttgtgaggct	15	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43167157	T	T	43167157	1	4	84	0	1	0	0	0	0	0	0	0	4094	1218	42	3		3	CUL9	6	43167157	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	15017	43167157	127947910	669	87276											
TTBK1	84630	broad.mit.edu	37	chr6	43227441	43227441	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagtggagctacctgagaGgaggtgggtctggggccagg	21	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43227441	A	A	43227441	3	1	84	1	0	0	0	0	1	0	0	0	16802	1000	35	4	1463	4	TTBK1	6	43227441	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	60284	43227441	127887626	670	87277											
C6orf154	221424	broad.mit.edu	37	chr6	43477372	43477372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacgtggccccggccaggGcccggcagatgcggccaaag	18	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43477372	A	A	43477372	3	1	84	1	0	0	0	0	1	0	0	0	2362	1203	42	4	822	4	C6orf154	6	43477372	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	249931	43477372	127637695	671	87278											
RSPH9	221421	broad.mit.edu	37	chr6	43623073	43623073	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactgattttttcctgtagtTttgaatatcataccaccctt	5	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43623073	A	A	43623073	1	1	84	0	1	0	0	0	0	0	0	0	13819	1856	64	5		5	RSPH9	6	43623073	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	145701	43623073	127491994	672	87279											
OPN5	221391	broad.mit.edu	37	chr6	47763181	47763181	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctcttgctcccaacggCtgtgatcgtgttctcctacg	9	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47763181	T	T	47763181	3	4	84	1	0	0	0	0	1	0	0	0	10977	797	28	4	652	4	OPN5	6	47763181	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4140108	47763181	123351886	673	87280											
RHAG	6005	broad.mit.edu	37	chr6	49604438	49604438	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgctcgagaacagtctGgtccgtttcatactcaacaa	9	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49604438	A	A	49604438	4	1	84	1	0	0	0	0	0	1	0	0	13424	1357	47	4	1181	4	RHAG	6	49604438	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1841257	49604438	121510629	674	87281											
DEFB112	245915	broad.mit.edu	37	chr6	50011298	50011298	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggatttcttcaatgacgtGagtctttagggtaccattct	9	7	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50011298	T	T	50011298	4	4	84	1	0	0	0	0	0	1	0	0	4440	1294	45	3	12	3	DEFB112	6	50011298	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	406860	50011298	121103769	675	87282											
TFAP2B	7021	broad.mit.edu	37	chr6	50803948	50803948	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttcagagacggctgtcgcCccctgaatgcctcaatgcat	10	13	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50803948	G	G	50803948	3	3	84	1	0	0	0	0	1	0	0	0	15911	623	22	4	790	4	TFAP2B	6	50803948	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	792650	50803948	120311119	676	87283											
TFAP2B	7021	broad.mit.edu	37	chr6	50807768	50807769	+	Intron	DNP	CC	AA	AA													cttttggctccaacagctggCcttctctggaaatactaaca							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50807769	AA	AA	50807768	1	1	84	0	1	0	0	0	0	0	0	0	15911	754	26	3		3	TFAP2B	6	50807768	Intron	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	3820	50807768	120307299	677	87284											
PKHD1	5314	broad.mit.edu	37	chr6	51656119	51656119	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaagtctaaggtccccatCacatacagccctttgaagaa	9	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51656119	G	G	51656119	2	3	84	1	0	0	0	0	0	0	0	1	12066	813	29	4		4	PKHD1	6	51656119	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	848351	51656119	119458948	678	87285											
PKHD1	5314	broad.mit.edu	37	chr6	51774197	51774197	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcttctgggaaggactgaAcgatcactctggctcccata	10	12	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51774197	G	G	51774197	3	3	84	1	0	0	0	0	1	0	0	0	12066	43	2	5	5809	5	PKHD1	6	51774197	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	118078	51774197	119340870	679	87286											
PKHD1	5314	broad.mit.edu	37	chr6	51890489	51890489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagacatattagcaaatccCatctgcttctgacgtacttg	6	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51890489	A	A	51890489	3	1	84	1	0	0	0	0	1	0	0	0	12066	594	21	2	8288	2	PKHD1	6	51890489	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	116292	51890489	119224578	680	87287											
PKHD1	5314	broad.mit.edu	37	chr6	51920356	51920356	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataccaatacctacccacctGacccagaagcacaaagactg	5	15	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51920356	C	C	51920356	1	2	84	0	1	0	0	0	0	0	0	0	12066	1305	45	4		4	PKHD1	6	51920356	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	29867	51920356	119194711	681	87288											
GSTA4	2941	broad.mit.edu	37	chr6	52858930	52858930	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaagctgtatgacaaatcCgtgaagaaacagcatataag	8	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52858930	A	A	52858930	1	1	84	0	1	0	0	0	0	0	0	0	6899	667	23	1		1	GSTA4	6	52858930	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	938574	52858930	118256137	682	87289											
TINAG	27283	broad.mit.edu	37	chr6	54208149	54208149	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcattttccactgcaagTaataaagtcattttaattcc	6	8	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54208149	A	A	54208149	5	1	84	1	0	0	0	0	0	0	1	0	16044	1652	57	5	768	5	TINAG	6	54208149	Splice_Site	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1349219	54208149	116906918	683	87290											
FAM83B	222584	broad.mit.edu	37	chr6	54735414	54735414	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggcacccatatagatctcCtttttcatccaccaagagca	7	13	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54735414	G	G	54735414	3	3	84	1	0	0	0	0	1	0	0	0	5687	681	24	4	372	4	FAM83B	6	54735414	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	527265	54735414	116379653	684	87291											
FAM83B	222584	broad.mit.edu	37	chr6	54805191	54805191	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgggacagataaccatatCcgctttttgcaacaacgaat	7	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54805191	A	A	54805191	2	1	84	1	0	0	0	0	0	0	0	1	5687	845	30	3		3	FAM83B	6	54805191	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	69777	54805191	116309876	685	87292											
HMGCLL1	54511	broad.mit.edu	37	chr6	55379010	55379010	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacctgaaaaatatataaTttaaagccaaatctaataac	3	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55379010	C	C	55379010	1	2	84	0	1	0	0	0	0	0	0	0	7297	1508	52	5		5	HMGCLL1	6	55379010	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	573819	55379010	115736057	686	87293											
RIMS1	22999	broad.mit.edu	37	chr6	72947526	72947526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaatttgtaattatccagGttgttggaggaaaaatgact	9	3	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72947526	T	T	72947526	3	4	84	1	0	0	0	0	1	0	0	0	13478	1275	44	3	2055	3	RIMS1	6	72947526	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	17568516	72947526	98167541	687	87294											
COL12A1	1303	broad.mit.edu	37	chr6	75842970	75842970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttataatgaaaagcaacaCttatgatgaaaaattaattt	4	4	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75842970	A	A	75842970	1	1	84	0	1	0	0	0	0	0	0	0	3701	580	20	3		3	COL12A1	6	75842970	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2895444	75842970	95272097	688	87295											
SNAP91	9892	broad.mit.edu	37	chr6	84311032	84311032	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgacagcagtaacagttgTagtagtggaggcagaagctg	15	5	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84311032	A	A	84311032	3	1	84	1	0	0	0	0	1	0	0	0	14947	1638	57	5	1497	5	SNAP91	6	84311032	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	8468062	84311032	86804035	689	87296											
RNGTT	8732	broad.mit.edu	37	chr6	89322381	89322381	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctggctacaaaaatgggCaacagcgttttttcctcatt	7	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89322381	A	A	89322381	1	1	84	0	1	0	0	0	0	0	0	0	13614	725	25	3		3	RNGTT	6	89322381	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5011349	89322381	81792686	690	87297											
BACH2	60468	broad.mit.edu	37	chr6	90661568	90661568	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtaacagcggcccaaagCccctggctgtgacctgcaaa	10	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90661568	T	T	90661568	3	4	84	1	0	0	0	0	1	0	0	0	1289	739	26	4	2280	4	BACH2	6	90661568	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1339187	90661568	80453499	691	87298											
EPHA7	2045	broad.mit.edu	37	chr6	93964337	93964337	+	Intron	DEL	T	-	-													gccattaatgtattcaatccTttttgtttaaatgaatgtaa							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93964337	-	-	93964337	6	5	84	0	1	1	0	1	0	0	0	0	5214	1624	56	0		0	EPHA7	6	93964337	Intron	DEL	T	TCGA-17-Z055-01A-01W-0747-08	3302769	93964337	77150730	692	87299											
EPHA7	2045	broad.mit.edu	37	chr6	94066637	94066637	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacacattcgccctgctcCcaactgcaccgcttacacaa	6	17	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94066637	T	T	94066637	4	4	84	1	0	0	0	0	0	1	0	0	5214	624	22	4	1926	4	EPHA7	6	94066637	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	102300	94066637	77048430	693	87300											
USP45	85015	broad.mit.edu	37	chr6	99955267	99955267	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaattggggggctgtGgttagtggacacaagaacta	13	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99955267	A	A	99955267	1	1	84	0	1	0	0	0	0	0	0	0	17203	1363	47	4		4	USP45	6	99955267	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5888630	99955267	71159800	694	87301											
SIM1	6492	broad.mit.edu	37	chr6	100838705	100838705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcacctgttggtgggggCtgttggtagtttgcaaaaca	13	7	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100838705	A	A	100838705	3	1	84	1	0	0	0	0	1	0	0	0	14436	796	28	3	471	3	SIM1	6	100838705	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	883438	100838705	70276362	695	87302											
ASCC3	10973	broad.mit.edu	37	chr6	100978227	100978227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaatctagtgaaaaaaacCgcagtaagttgtctatctca	6	9	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100978227	A	A	100978227	1	1	84	0	1	0	0	0	0	0	0	0	1037	667	23	1		1	ASCC3	6	100978227	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	139522	100978227	70136840	696	87303											
QRSL1	55278	broad.mit.edu	37	chr6	107102802	107102802	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgggctacaatatggtaaGatggctgggttattttattt	12	3	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107102802	A	A	107102802	1	1	84	0	1	0	0	0	0	0	0	0	12989	957	33	4		4	QRSL1	6	107102802	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6124575	107102802	64012265	697	87304											
WASF1	8936	broad.mit.edu	37	chr6	110422895	110422895	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtataacttgtgatggaggaGatggaggcattaatggaaca	14	3	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110422895	C	C	110422895	3	2	84	1	0	0	0	0	1	0	0	0	17379	942	33	4	269	4	WASF1	6	110422895	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3320093	110422895	60692172	698	87305											
REV3L	5980	broad.mit.edu	37	chr6	111701261	111701261	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actaagctccatttcctcttTttcaatctgtggttcatttt	4	10	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111701261	C	C	111701261	3	2	84	1	0	0	0	0	1	0	0	0	13348	1850	64	5	8102	5	REV3L	6	111701261	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1278366	111701261	59413806	699	87306											
LAMA4	3910	broad.mit.edu	37	chr6	112471781	112471782	+	Nonsense_Mutation	DNP	AG	TA	TA													taagggcacttttccttgctAgggctccacccacacgcctg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	112471782	TA	TA	112471781	4	4	84	1	0	0	0	0	0	1	0	0	8680	420	15	5	3458	5	LAMA4	6	112471781	Nonsense_Mutation	DNP	AG	TCGA-17-Z055-01A-01W-0747-08	770520	112471781	58643286	700	87307											
HS3ST5	222537	broad.mit.edu	37	chr6	114384030	114384030	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccctccatcaaccttcagGactgctgcagcctgcgatag	10	15	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114384030	T	T	114384030	1	4	84	0	1	0	0	0	0	0	0	0	7435	1189	41	3		3	HS3ST5	6	114384030	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1912249	114384030	56731037	701	87308											
ROS1	6098	broad.mit.edu	37	chr6	117735649	117735649	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagatgaagacatgtggcTtgattacatcttttttgtga	10	5	1	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117735649	A	A	117735649	1	1	84	0	1	0	0	0	0	0	0	0	13642	1624	56	5		5	ROS1	6	117735649	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3351619	117735649	53379418	702	87309											
C6orf204	387119	broad.mit.edu	37	chr6	118953774	118953774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgatgaataatctgggCctaaaaagggaaatatgtaa	10	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118953774	A	A	118953774	3	1	84	1	0	0	0	0	1	0	0	0	2376	753	26	3	2445	3	C6orf204	6	118953774	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1218125	118953774	52161293	703	87310											
HSF2	3298	broad.mit.edu	37	chr6	122743769	122743769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaagcctttcagtatgtgGtatggggagagagtttccat	12	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122743769	T	T	122743769	1	4	84	0	1	0	0	0	0	0	0	0	7463	1276	44	3		3	HSF2	6	122743769	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3789995	122743769	48371298	704	87311											
CLVS2	134829	broad.mit.edu	37	chr6	123377050	123377050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcctccttatgacatgGggacatgggcaagaacactg	12	10	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123377050	T	T	123377050	3	4	84	1	0	0	0	0	1	0	0	0	3604	1232	43	2	789	2	CLVS2	6	123377050	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	633281	123377050	47738017	705	87312											
NKAIN2	154215	broad.mit.edu	37	chr6	125139492	125139492	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttgatcatggatgtatAtctcttctgaaaagctaatt	8	6	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125139492	G	G	125139492	1	3	84	0	1	0	0	0	0	0	0	0	10531	464	16	5		5	NKAIN2	6	125139492	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1762442	125139492	45975575	706	87313											
HDDC2	51020	broad.mit.edu	37	chr6	125597332	125597332	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcagctatgttagtgCttctttctgcctcaagttca	8	11	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125597332	T	T	125597332	3	4	84	1	0	0	0	0	1	0	0	0	7083	797	28	4	43	4	HDDC2	6	125597332	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	457840	125597332	45517735	707	87314											
C6orf58	352999	broad.mit.edu	37	chr6	127898419	127898419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatctctcagagacagagcCccctctgtggaaggagagtc	11	12	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127898419	A	A	127898419	3	1	84	1	0	0	0	0	1	0	0	0	2391	623	22	2	91	2	C6orf58	6	127898419	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2301087	127898419	43216648	708	87315											
THEMIS	387357	broad.mit.edu	37	chr6	128134051	128134051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagacttgggcaggtctaCcgtcctttcttctgctaagg	13	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128134051	A	A	128134051	3	1	84	1	0	0	0	0	1	0	0	0	15983	507	18	3	323	3	THEMIS	6	128134051	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	235632	128134051	42981016	709	87316											
SAMD3	154075	broad.mit.edu	37	chr6	130465976	130465976	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagagtggagtcattaccAtgatacgtaaaatagctaaa	8	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130465976	T	T	130465976	1	4	84	0	1	0	0	0	0	0	0	0	13931	232	8	5		5	SAMD3	6	130465976	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2331925	130465976	40649091	710	87317											
MED23	9439	broad.mit.edu	37	chr6	131943165	131943165	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaattaagtagtgtctacTgtgttagctaaaacgtccga	8	6	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131943165	A	A	131943165	1	1	84	0	1	0	0	0	0	0	0	0	9534	1595	55	5		5	MED23	6	131943165	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1477189	131943165	39171902	711	87318											
ENPP1	5167	broad.mit.edu	37	chr6	132176177	132176177	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaactaagtgagtaacttcaGagtttactgctggaatatca	8	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132176177	A	A	132176177	1	1	84	0	1	0	0	0	0	0	0	0	5171	957	33	4		4	ENPP1	6	132176177	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	233012	132176177	38938890	712	87319											
HBS1L	10767	broad.mit.edu	37	chr6	135306526	135306526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaaaggtttgtcaatagatCgctggggaggcttaaaggaa	13	4	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135306526	A	A	135306526	3	1	84	1	0	0	0	0	1	0	0	0	7053	884	31	3	637	3	HBS1L	6	135306526	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3130349	135306526	35808541	713	87320											
MAP3K5	4217	broad.mit.edu	37	chr6	136977654	136977654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttagaaccacctgttccCatgtatcccagtctaattct	4	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136977654	A	A	136977654	1	1	84	0	1	0	0	0	0	0	0	0	9345	609	21	2		2	MAP3K5	6	136977654	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1671128	136977654	34137413	714	87321											
HIVEP2	3097	broad.mit.edu	37	chr6	143094352	143094352	+	Frame_Shift_Del	DEL	A	-	-													tcgttcctgatagatgatggAataatctggggttgtctgga							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143094352	-	-	143094352	7	5	84	1	0	1	0	1	0	0	0	0	7254	242	9	0	5840	0	HIVEP2	6	143094352	Frame_Shift_Del	DEL	A	TCGA-17-Z055-01A-01W-0747-08	6116698	143094352	28020715	715	87322											
UTRN	7402	broad.mit.edu	37	chr6	144780218	144780218	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttaaggagggcttctcgtAtcatgaactttaagttaatg	10	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144780218	G	G	144780218	1	3	84	0	1	0	0	0	0	0	0	0	17230	464	16	5		5	UTRN	6	144780218	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1685866	144780218	26334849	716	87323											
STXBP5	134957	broad.mit.edu	37	chr6	147684840	147684840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacatataatgacttttaGgtaagagttagatatgtttt	9	2	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147684840	T	T	147684840	3	4	84	1	0	0	0	0	1	0	0	0	15474	1014	35	2	3009	2	STXBP5	6	147684840	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2904622	147684840	23430227	717	87324											
SYNE1	23345	broad.mit.edu	37	chr6	152643000	152643000	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcaccaactttccattAgtcttcactttctcctgcat	3	14	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152643000	C	C	152643000	2	2	84	1	0	0	0	0	0	0	0	1	15564	407	15	5		5	SYNE1	6	152643000	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4958160	152643000	18472067	718	87325											
TIAM2	26230	broad.mit.edu	37	chr6	155450580	155450580	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaagagtaaccagccttacGcatcgagactcggtggcccc	10	13	0	2	rs138740409	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155450580	C	C	155450580	3	2	84	1	0	0	0	0	1	0	0	0	16014	1087	38	4	225	4	TIAM2	6	155450580	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2807580	155450580	15664487	719	87326											
TIAM2	26230	broad.mit.edu	37	chr6	155451585	155451585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcagagggaagggtcccCacagtttccccacctggaga	13	12	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155451585	A	A	155451585	1	1	84	0	1	0	0	0	0	0	0	0	16014	609	21	2		2	TIAM2	6	155451585	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1005	155451585	15663482	720	87327											
SYNJ2	8871	broad.mit.edu	37	chr6	158514936	158514936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagattgttttttgctctcGctctcaagcttctcagcctt	7	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158514936	T	T	158514936	1	4	84	0	1	0	0	0	0	0	0	0	15572	1102	38	3		3	SYNJ2	6	158514936	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3063351	158514936	12600131	721	87328											
TMEM181	57583	broad.mit.edu	37	chr6	159028350	159028350	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaagtggatgtctgttctCctgcctctgctgctacttta	9	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159028350	T	T	159028350	2	4	84	1	0	0	0	0	0	0	0	1	16223	842	30	4		4	TMEM181	6	159028350	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	513414	159028350	12086717	722	87329											
LPA	4018	broad.mit.edu	37	chr6	160977328	160977328	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgactgttctctttagtaTactcacaagcagaaggacat	7	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160977328	A	A	160977328	1	1	84	0	1	0	0	0	0	0	0	0	8990	1421	49	5		5	LPA	6	160977328	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1948978	160977328	10137739	723	87330											
LPA	4018	broad.mit.edu	37	chr6	161016506	161016506	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgacactgggatccaTggtgtaacaccaagggcgaa	11	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161016506	A	A	161016506	3	1	84	1	0	0	0	0	1	0	0	0	8990	1464	51	5	2849	5	LPA	6	161016506	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	39178	161016506	10098561	724	87331											
MAP3K4	4216	broad.mit.edu	37	chr6	161523039	161523039	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagatggtgagtgttttaagGtgttagctgcattcacaacc	12	6	1	2	rs144011617	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161523039	C	C	161523039	1	2	84	0	1	0	0	0	0	0	0	0	9344	1276	44	4		4	MAP3K4	6	161523039	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	506533	161523039	9592028	725	87332											
PARK2	5071	broad.mit.edu	37	chr6	162475106	162475106	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaataagaggaatgaaTgtgaccaggtacttactgca	10	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162475106	C	C	162475106	1	2	84	0	1	0	0	0	0	0	0	0	11543	1479	51	5		5	PARK2	6	162475106	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	952067	162475106	8639961	726	87333											
C6orf118	168090	broad.mit.edu	37	chr6	165711304	165711304	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatgtcttagtcacatagGtgatggcctgtagaaatagc	11	6	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165711304	A	A	165711304	1	1	84	0	1	0	0	0	0	0	0	0	2346	1276	44	4		4	C6orf118	6	165711304	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3236198	165711304	5403763	727	87334											
UNC93A	54346	broad.mit.edu	37	chr6	167728668	167728668	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctcactccgctctctccTctgcagctctctacggcgtt	7	18	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167728668	A	A	167728668	1	1	84	0	1	0	0	0	0	0	0	0	17122	1566	54	5		5	UNC93A	6	167728668	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2017364	167728668	3386399	728	87335											
SDK1	221935	broad.mit.edu	37	chr7	4119117	4119117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctggtgccccatccaaCctggtcatttccaacatcag	6	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4119117	A	A	4119117	3	1	84	1	0	0	0	0	1	0	0	0	14081	506	18	3	3311	3	SDK1	7	4119117	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08		4119117	155019546	729	87336											
SDK1	221935	broad.mit.edu	37	chr7	4152974	4152974	+	Frame_Shift_Del	DEL	C	-	-													gagcccctacagtccgtcttCccgggtcatccagaccctgc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4152974	-	-	4152974	7	5	84	1	0	1	0	1	0	0	0	0	14081	855	30	0	3582	0	SDK1	7	4152974	Frame_Shift_Del	DEL	C	TCGA-17-Z055-01A-01W-0747-08	33857	4152974	154985689	730	87337											
COL28A1	340267	broad.mit.edu	37	chr7	7476975	7476975	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtatcatgatttttttttctCcaactgccaaagggtcaaga	7	8	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7476975	G	G	7476975	1	3	84	0	1	0	0	0	0	0	0	0	3718	870	30	4		4	COL28A1	7	7476975	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3324001	7476975	151661688	731	87338											
PHF14	9678	broad.mit.edu	37	chr7	11046337	11046337	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatatctgggctgcctccaGagtctcagtgtcttgggctg	14	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11046337	T	T	11046337	1	4	84	0	1	0	0	0	0	0	0	0	11920	957	33	3		3	PHF14	7	11046337	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3569362	11046337	148092326	732	87339											
DGKB	1607	broad.mit.edu	37	chr7	14647102	14647103	+	Frame_Shift_Ins	INS	-	A	A													agactgtaaacctgacgaggINSatttaatagatactggaatt							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14647103	A	A	14647102	7	5	84	1	0	1	1	0	0	0	0	0	4506	1174	41	0	1076	0	DGKB	7	14647102	Frame_Shift_Ins	INS	-	TCGA-17-Z055-01A-01W-0747-08	3600765	14647102	144491561	733	87340											
DGKB	1607	broad.mit.edu	37	chr7	14741215	14741215	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaattacattaagtgtgCcttctgtggtaataactaca	7	6	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14741215	T	T	14741215	1	4	84	0	1	0	0	0	0	0	0	0	4506	754	26	4		4	DGKB	7	14741215	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	94113	14741215	144397448	734	87341											
TMEM195	392636	broad.mit.edu	37	chr7	15470631	15470631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatttcatacaacttaccCaggaagtatatatctggagg	7	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15470631	A	A	15470631	3	1	84	1	0	0	0	0	1	0	0	0	16240	608	21	2	865	2	TMEM195	7	15470631	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	729416	15470631	143668032	735	87342											
HDAC9	9734	broad.mit.edu	37	chr7	18633383	18633383	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catactgctacagtgaacttGgttatgtgaggctatggttt	11	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18633383	C	C	18633383	1	2	84	0	1	0	0	0	0	0	0	0	7081	1363	47	4		4	HDAC9	7	18633383	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3162752	18633383	140505280	736	87343											
MACC1	346389	broad.mit.edu	37	chr7	20198295	20198295	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaagtaatcaatcttgctTtgtcttagcactgccttcag	8	9	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20198295	G	G	20198295	3	3	84	1	0	0	0	0	1	0	0	0	9231	1838	64	5	881	5	MACC1	7	20198295	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1564912	20198295	138940368	737	87344											
DNAH11	8701	broad.mit.edu	37	chr7	21640543	21640543	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caactcttgagcaattcaaaGaacaggcaaggaaaaccctt	7	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21640543	T	T	21640543	4	4	84	1	0	0	0	0	0	1	0	0	4639	943	33	3	3312	3	DNAH11	7	21640543	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1442248	21640543	137498120	738	87345											
NUPL2	11097	broad.mit.edu	37	chr7	23240332	23240332	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgggaaaaattccattaAagcctccacctctggaactt	6	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23240332	T	T	23240332	4	4	84	1	0	0	0	0	0	1	0	0	10870	15	1	5	1266	5	NUPL2	7	23240332	Nonsense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1599789	23240332	135898331	739	87346											
HOXA5	3202	broad.mit.edu	37	chr7	27182841	27182841	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggtgctgccggcgtcggccGaggcgccgctggagttgctt	19	12	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182841	A	A	27182841	3	1	84	1	0	0	0	0	1	0	0	0	7362	1059	37	4	434	4	HOXA5	7	27182841	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3942509	27182841	131955822	740	87347											
AQP1	358	broad.mit.edu	37	chr7	30961709	30961709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtgaactcgggccaggGcctgggcatcgagatcatcg	16	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30961709	A	A	30961709	3	1	84	1	0	0	0	0	1	0	0	0	823	1203	42	4	676	4	AQP1	7	30961709	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3778868	30961709	128176954	741	87348											
CCDC129	223075	broad.mit.edu	37	chr7	31592621	31592621	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgttttaagttagtTtgcagaattactctcctatg	9	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31592621	C	C	31592621	1	2	84	0	1	0	0	0	0	0	0	0	2790	1855	64	5		5	CCDC129	7	31592621	5'UTR	SNP	T	TCGA-17-Z055-01A-01W-0747-08	630912	31592621	127546042	742	87349											
TBX20	57057	broad.mit.edu	37	chr7	35271073	35271073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacaaactccctcttctctTgatcttatctgaacaagaaa	3	11	4	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35271073	C	C	35271073	1	2	84	0	1	0	0	0	0	0	0	0	15778	1827	63	5		5	TBX20	7	35271073	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3678452	35271073	123867590	743	87350											
SEPT7	989	broad.mit.edu	37	chr7	35913392	35913392	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaggacatgggtcagtAccttgatacttctgattcct	8	11	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35913392	T	T	35913392	1	4	84	0	1	0	0	0	0	0	0	0	14182	406	14	5		5	SEPT7	7	35913392	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	642319	35913392	123225271	744	87351											
ELMO1	9844	broad.mit.edu	37	chr7	37382322	37382322	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaaatgttcaaagccaGtgggaatgaggatcctacag	10	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37382322	T	T	37382322	1	4	84	1	0	0	0	0	0	0	0	0	5107	1044	36	3		3	ELMO1	7	37382322	Translation_Start_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1468930	37382322	121756341	745	87352											
EPDR1	54749	broad.mit.edu	37	chr7	37988507	37988507	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattgaccaagccaccaagcAgtgctcaaagatgaccctga	9	12	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37988507	T	T	37988507	3	4	84	1	0	0	0	0	1	0	0	0	5205	188	7	5	701	5	EPDR1	7	37988507	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	606185	37988507	121150156	746	87353											
INHBA	3624	broad.mit.edu	37	chr7	41729504	41729504	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttggcatgatagccagagGgagcaatgatccagtcattc	12	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41729504	A	A	41729504	3	1	84	1	0	0	0	0	1	0	0	0	7811	1232	43	4	259	4	INHBA	7	41729504	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3740997	41729504	117409159	747	87354											
HECW1	23072	broad.mit.edu	37	chr7	43484000	43484000	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtccagggaaccaaagcaTagagctttccagaccagctg	11	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43484000	C	C	43484000	3	2	84	1	0	0	0	0	1	0	0	0	7109	1406	49	5	1263	5	HECW1	7	43484000	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1754496	43484000	115654663	748	87355											
CAMK2B	816	broad.mit.edu	37	chr7	44283045	44283045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccatgcctgctggtcccCctgcacctcgatagctaggc	9	16	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44283045	A	A	44283045	3	1	84	1	0	0	0	0	1	0	0	0	2626	623	22	2	1575	2	CAMK2B	7	44283045	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	799045	44283045	114855618	749	87356											
DDX56	54606	broad.mit.edu	37	chr7	44612371	44612371	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacaagacatcagtatcaGgcagaatgtagcagctggga	13	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44612371	A	A	44612371	1	1	84	0	1	0	0	0	0	0	0	0	4407	1015	35	4		4	DDX56	7	44612371	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	329326	44612371	114526292	750	87357											
PKD1L1	168507	broad.mit.edu	37	chr7	47869105	47869105	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaacgttctgccaattcaGagtccagatccctggtagcc	10	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47869105	A	A	47869105	3	1	84	1	0	0	0	0	1	0	0	0	12059	942	33	4	1952	4	PKD1L1	7	47869105	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3256734	47869105	111269558	751	87358											
SUN3	256979	broad.mit.edu	37	chr7	48026964	48026964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgtgccatggaccctgaatCgatataaacaagtatacttc	8	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48026964	T	T	48026964	3	4	84	1	0	0	0	0	1	0	0	0	15511	884	31	4	40	4	SUN3	7	48026964	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	157859	48026964	111111699	752	87359											
ABCA13	154664	broad.mit.edu	37	chr7	48311678	48311678	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagtgatttggaaaatgcaGactctcggaagtcactggat	12	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48311678	A	A	48311678	2	1	84	1	0	0	0	0	0	0	0	1	31	933	33	4		4	ABCA13	7	48311678	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	284714	48311678	110826985	753	87360											
VWC2	375567	broad.mit.edu	37	chr7	49842462	49842462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatccccgttggtgacgGggtgcacctcccaccctgat	12	14	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49842462	T	T	49842462	1	4	84	0	1	0	0	0	0	0	0	0	17370	1247	43	2		2	VWC2	7	49842462	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1530784	49842462	109296201	754	87361											
ZPBP	11055	broad.mit.edu	37	chr7	50070670	50070670	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatttgcttttctaaCaaattgtatagacttacctg	4	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50070670	G	G	50070670	1	3	84	0	1	0	0	0	0	0	0	0	18348	493	17	4		4	ZPBP	7	50070670	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	228208	50070670	109067993	755	87362											
POM121L12	285877	broad.mit.edu	37	chr7	53104038	53104038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctgagcaaaaatggagCggttgcttccttcgtgccca	11	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104038	A	A	53104038	3	1	84	1	0	0	0	0	1	0	0	0	12336	768	27	3	676	3	POM121L12	7	53104038	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3033368	53104038	106034625	756	87363											
POM121L12	285877	broad.mit.edu	37	chr7	53104052	53104052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagcggttgcttccttcGtgcccaggccagggcctctg	14	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104052	T	T	53104052	3	4	84	1	0	0	0	0	1	0	0	0	12336	1145	40	3	690	3	POM121L12	7	53104052	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	14	53104052	106034611	757	87364											
KCTD7	154881	broad.mit.edu	37	chr7	66104113	66104113	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcacggacctctcggcccAgggtctcaccgtggaccacc	12	17	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66104113	T	T	66104113	3	4	84	1	0	0	0	0	1	0	0	0	8184	188	7	5	778	5	KCTD7	7	66104113	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	13000061	66104113	93034550	758	87365											
AUTS2	26053	broad.mit.edu	37	chr7	69599436	69599436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtgatgaaaagcctgCaaagggctggtaatgagctg	15	5	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69599436	A	A	69599436	1	1	84	0	1	0	0	0	0	0	0	0	1230	725	25	3		3	AUTS2	7	69599436	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3495323	69599436	89539227	759	87366											
AUTS2	26053	broad.mit.edu	37	chr7	69599588	69599588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacttccacatatgtgcCttgcattggcattgatttcc	6	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69599588	A	A	69599588	1	1	84	0	1	0	0	0	0	0	0	0	1230	696	24	2		2	AUTS2	7	69599588	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	152	69599588	89539075	760	87367											
WBSCR17	64409	broad.mit.edu	37	chr7	70853323	70853323	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggtccgtgcacagtgcCgtcaatcacacgcccacaca	9	17	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70853323	A	A	70853323	2	1	84	1	0	0	0	0	0	0	0	1	17391	639	23	1		1	WBSCR17	7	70853323	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1253735	70853323	88285340	761	87368											
WBSCR17	64409	broad.mit.edu	37	chr7	71175705	71175706	+	Intron	DNP	CC	AT	AT													cctcccatgtctcactcctgCctcccacttccattcccctg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	71175706	AT	AT	71175705	1	1	84	0	1	0	0	0	0	0	0	0	17391	754	26	3		3	WBSCR17	7	71175705	Intron	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	322382	71175705	87962958	762	87369											
TRIM50	135892	broad.mit.edu	37	chr7	72729115	72729115	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaacaaatgtgatgagatcCgccatcactggggaggcagt	12	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72729115	T	T	72729115	1	4	84	0	1	0	0	0	0	0	0	0	16651	667	23	4		4	TRIM50	7	72729115	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1553410	72729115	86409548	763	87370											
MAGI2	9863	broad.mit.edu	37	chr7	77814926	77814926	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgttttgttcacagaactgtGagtactgaacaatacttgcc	8	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77814926	T	T	77814926	1	4	84	0	1	0	0	0	0	0	0	0	9283	1305	45	3		3	MAGI2	7	77814926	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5085811	77814926	81323737	764	87371											
HGF	3082	broad.mit.edu	37	chr7	81388134	81388134	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagccctgaaaaaaatatCagaatgaaaagaagaaatac	6	5	1	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81388134	A	A	81388134	1	1	84	0	1	0	0	0	0	0	0	0	7152	841	29	3		3	HGF	7	81388134	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3573208	81388134	77750529	765	87372											
PCLO	27445	broad.mit.edu	37	chr7	82544299	82544299	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actggtcggcttagttctggCagaggatgatgcatgactaa	13	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82544299	G	G	82544299	3	3	84	1	0	0	0	0	1	0	0	0	11677	710	25	4	2518	4	PCLO	7	82544299	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1156165	82544299	76594364	766	87373											
ABCB1	5243	broad.mit.edu	37	chr7	87195636	87195636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagcctgttttgagtgtAgggtagtttatggctagagt	15	3	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87195636	T	T	87195636	1	4	84	0	1	0	0	0	0	0	0	0	40	435	15	5		5	ABCB1	7	87195636	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4651337	87195636	71943027	767	87374											
CDK6	1021	broad.mit.edu	37	chr7	92247587	92247587	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctgttttctcatcaattTccagagaaaggcaaaatcta	6	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92247587	A	A	92247587	1	1	84	0	1	0	0	0	0	0	0	0	3178	1798	62	5		5	CDK6	7	92247587	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5051951	92247587	66891076	768	87375											
SAMD9	54809	broad.mit.edu	37	chr7	92731594	92731594	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttagcaggacaaagtattCatcaaaaaaatcaaaggact	6	6	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92731594	G	G	92731594	3	3	84	1	0	0	0	0	1	0	0	0	13937	835	29	4	956	4	SAMD9	7	92731594	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	484007	92731594	66407069	769	87376											
TFPI2	7980	broad.mit.edu	37	chr7	93518300	93518300	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagttttttccacccaaatGtcttttcaaaaaagtgaaat	5	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93518300	A	A	93518300	1	1	84	0	1	0	0	0	0	0	0	0	15932	1392	48	4		4	TFPI2	7	93518300	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	786706	93518300	65620363	770	87377											
COL1A2	1278	broad.mit.edu	37	chr7	94034938	94034938	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaagtcactgtcttttTatttatggtaaaacattatt	7	4	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94034938	G	G	94034938	1	3	84	0	1	0	0	0	0	0	0	0	3710	1769	61	5		5	COL1A2	7	94034938	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	516638	94034938	65103725	771	87378											
PEG10	23089	broad.mit.edu	37	chr7	94293493	94293493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattgaccagtaccacgagGgcctcagcgaccacattcag	10	13	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94293493	T	T	94293493	3	4	84	1	0	0	0	0	1	0	0	0	11813	1232	43	2	859	2	PEG10	7	94293493	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	258555	94293493	64845170	772	87379											
PPP1R9A	55607	broad.mit.edu	37	chr7	94539687	94539688	+	Frame_Shift_Ins	INS	-	G	G													tgcagtcattgccaaaacaaINSgggggaaaggtggacattca							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94539688	G	G	94539687	7	5	84	1	0	1	1	0	0	0	0	0	12479	63	3	0	264	0	PPP1R9A	7	94539687	Frame_Shift_Ins	INS	-	TCGA-17-Z055-01A-01W-0747-08	246194	94539687	64598976	773	87380											
TAC1	6863	broad.mit.edu	37	chr7	97363000	97363000	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcctcgctctggttgcCttacacgccctttgtccgtg	12	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97363000	T	T	97363000	1	4	84	0	1	0	0	0	0	0	0	0	15617	696	24	4		4	TAC1	7	97363000	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2823313	97363000	61775663	774	87381											
NPTX2	4885	broad.mit.edu	37	chr7	98254144	98254144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtgagggaccttcttGtgggtctagcaagatgtggc	16	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98254144	T	T	98254144	1	4	84	0	1	0	0	0	0	0	0	0	10698	1392	48	3		3	NPTX2	7	98254144	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	891144	98254144	60884519	775	87382											
TRRAP	8295	broad.mit.edu	37	chr7	98519319	98519319	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccttttgagttttgatccGaacctcgtgaaggcattacc	8	11	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98519319	T	T	98519319	1	4	84	0	1	0	0	0	0	0	0	0	16726	1073	37	3		3	TRRAP	7	98519319	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	265175	98519319	60619344	776	87383											
TRRAP	8295	broad.mit.edu	37	chr7	98592095	98592095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgtgtgggtcctgccGgggagtgcagagatgaccct	17	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98592095	T	T	98592095	1	4	84	0	1	0	0	0	0	0	0	0	16726	1131	39	1		1	TRRAP	7	98592095	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	72776	98592095	60546568	777	87384											
MOSPD3	64598	broad.mit.edu	37	chr7	100212502	100212502	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctcagacccccgccagcAactggccaccagctccttcc	6	20	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100212502	C	C	100212502	3	2	84	1	0	0	0	0	1	0	0	0	9811	130	5	5	538	5	MOSPD3	7	100212502	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1620407	100212502	58926161	778	87385											
ACHE	43	broad.mit.edu	37	chr7	100491327	100491327	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtagttcatggacaccagcAcagtcctctcggcctgtacc	10	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100491327	T	T	100491327	3	4	84	1	0	0	0	0	1	0	0	0	141	159	6	5	1468	5	ACHE	7	100491327	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	278825	100491327	58647336	779	87386											
MUC17	140453	broad.mit.edu	37	chr7	100679973	100679973	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtatacctgtcagcaccaCgccggtactcagttctgagg	10	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100679973	T	T	100679973	3	4	84	1	0	0	0	0	1	0	0	0	10068	536	19	4	5286	4	MUC17	7	100679973	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	188646	100679973	58458690	780	87387											
RELN	5649	broad.mit.edu	37	chr7	103123313	103123313	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgggatgccatgtaatagaTactcacaggacgacctccac	9	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103123313	C	C	103123313	1	2	84	0	1	0	0	0	0	0	0	0	13328	1421	49	5		5	RELN	7	103123313	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2443340	103123313	56015350	781	87388											
RELN	5649	broad.mit.edu	37	chr7	103191701	103191701	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaaaattccagtctcaCtggatccgcggatgagctat	9	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103191701	G	G	103191701	3	3	84	1	0	0	0	0	1	0	0	0	13328	565	20	4	4367	4	RELN	7	103191701	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	68388	103191701	55946962	782	87389											
RELN	5649	broad.mit.edu	37	chr7	103338398	103338398	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgagctgaattgatgatcaAgatgttatctaaggcccagc	11	7	2	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103338398	T	T	103338398	3	4	84	1	0	0	0	0	1	0	0	0	13328	69	3	5	9561	5	RELN	7	103338398	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	146697	103338398	55800265	783	87390											
RELN	5649	broad.mit.edu	37	chr7	103474033	103474033	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagcaatccagatgaaacTgaggttggttgtgggcaggt	16	5	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103474033	A	A	103474033	3	1	84	1	0	0	0	0	1	0	0	0	13328	1580	55	5	10210	5	RELN	7	103474033	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	135635	103474033	55664630	784	87391											
SRPK2	6733	broad.mit.edu	37	chr7	104785765	104785765	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccgtactcactaaaataaAatcaaacaaaatctgtattt	3	8	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104785765	G	G	104785765	1	3	84	0	1	0	0	0	0	0	0	0	15278	29	1	5		5	SRPK2	7	104785765	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1311732	104785765	54352898	785	87392											
SRPK2	6733	broad.mit.edu	37	chr7	104844089	104844089	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcacctttgcagtagtccGcagggtcctcttgctcctca	8	15	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104844089	A	A	104844089	3	1	84	1	0	0	0	0	1	0	0	0	15278	1087	38	4	1940	4	SRPK2	7	104844089	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	58324	104844089	54294574	786	87393											
LAMB1	3912	broad.mit.edu	37	chr7	107620994	107620994	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttaaggtaagactagctTcactttgcattttattacca	7	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107620994	C	C	107620994	1	2	84	0	1	0	0	0	0	0	0	0	8682	1798	62	5		5	LAMB1	7	107620994	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2776905	107620994	51517669	787	87394											
DOCK4	9732	broad.mit.edu	37	chr7	111387424	111387424	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catctgtcttgtctgacactGactaatcagagtcttcagct	7	11	6	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111387424	T	T	111387424	3	4	84	1	0	0	0	0	1	0	0	0	4729	1299	45	3	1479	3	DOCK4	7	111387424	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3766430	111387424	47751239	788	87395											
ZNF277	11179	broad.mit.edu	37	chr7	111977724	111977724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcaataccaagtcactGtgtagtatactctcttaatg	7	8	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111977724	T	T	111977724	1	4	84	0	1	0	0	0	0	0	0	0	17938	1392	48	3		3	ZNF277	7	111977724	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	590300	111977724	47160939	789	87396											
GPR85	54329	broad.mit.edu	37	chr7	112724234	112724234	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaatcctaaggaatcattAgccctgaaggagcggtgttg	11	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112724234	T	T	112724234	2	4	84	1	0	0	0	0	0	0	0	1	6780	407	15	5		5	GPR85	7	112724234	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	746510	112724234	46414429	790	87397											
PPP1R3A	5506	broad.mit.edu	37	chr7	113519888	113519888	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttcatcactactagtatctCccaatgatggcttgatttct	6	10	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113519888	T	T	113519888	3	4	84	1	0	0	0	0	1	0	0	0	12472	855	30	4	2113	4	PPP1R3A	7	113519888	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	795654	113519888	45618775	791	87398											
MET	4233	broad.mit.edu	37	chr7	116411790	116411790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattgtcgtcgattcttgtGtgctgtcttatatgtagtcc	10	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116411790	T	T	116411790	1	4	84	0	1	0	0	0	0	0	0	0	9578	1392	48	3		3	MET	7	116411790	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2891902	116411790	42726873	792	87399											
KCND2	3751	broad.mit.edu	37	chr7	119915394	119915394	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcttggacacggcctgCgtcatgatcttcacagttga	10	11	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119915394	A	A	119915394	4	1	84	1	0	0	0	0	0	1	0	0	8089	776	27	3	710	3	KCND2	7	119915394	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3503604	119915394	39223269	793	87400											
PTPRZ1	5803	broad.mit.edu	37	chr7	121650745	121650745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaaaactgttcttagatctCcacatatgaacttgtcgggg	8	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121650745	A	A	121650745	3	1	84	1	0	0	0	0	1	0	0	0	12922	855	30	3	1691	3	PTPRZ1	7	121650745	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1735351	121650745	37487918	794	87401											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651281	121651281	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgaggtaacacctcatgcTtttaccccatcctccagaca	5	15	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121651281	A	A	121651281	2	1	84	1	0	0	0	0	0	0	0	1	12922	1596	56	5		5	PTPRZ1	7	121651281	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	536	121651281	37487382	795	87402											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651816	121651816	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttataaaacgcttatgtttTctcaagttgaaccacccagc	5	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121651816	C	C	121651816	3	2	84	1	0	0	0	0	1	0	0	0	12922	1783	62	5	2762	5	PTPRZ1	7	121651816	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	535	121651816	37486847	796	87403											
PTPRZ1	5803	broad.mit.edu	37	chr7	121701312	121701312	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaactcacatctgagcattgTtttcctcttcctaaaattag	5	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121701312	C	C	121701312	1	2	84	0	1	0	0	0	0	0	0	0	12922	1740	60	5		5	PTPRZ1	7	121701312	3'UTR	SNP	T	TCGA-17-Z055-01A-01W-0747-08	49496	121701312	37437351	797	87404											
TAS2R16	50833	broad.mit.edu	37	chr7	122635480	122635480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cataattcaaattaaaatagGagcaaaaattgttcagcatt	5	5	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122635480	T	T	122635480	3	4	84	1	0	0	0	0	1	0	0	0	15688	1174	41	3	670	3	TAS2R16	7	122635480	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	934168	122635480	36503183	798	87405											
SLC13A1	6561	broad.mit.edu	37	chr7	122811842	122811842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcaggatttacaccaacCatcatcaccattttcagagc	5	13	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122811842	A	A	122811842	3	1	84	1	0	0	0	0	1	0	0	0	14504	594	21	2	1494	2	SLC13A1	7	122811842	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	176362	122811842	36326821	799	87406											
IQUB	154865	broad.mit.edu	37	chr7	123143294	123143294	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatgatttgagagacatcaGttaatccatctattcttctg	6	7	4	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123143294	C	C	123143294	3	2	84	1	0	0	0	0	1	0	0	0	7890	1029	36	4	1759	4	IQUB	7	123143294	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	331452	123143294	35995369	800	87407											
WASL	8976	broad.mit.edu	37	chr7	123334768	123334768	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatagagataaaagttaCcttgcctccgcagttcattt	7	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123334768	A	A	123334768	5	1	84	1	0	0	0	0	0	0	1	0	17383	521	18	3	706	3	WASL	7	123334768	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	191474	123334768	35803895	801	87408											
HYAL4	23553	broad.mit.edu	37	chr7	123509102	123509102	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaacagcagtgctgctttaTatccttctatcggtgtctgg	11	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123509102	A	A	123509102	3	1	84	1	0	0	0	0	1	0	0	0	7536	1406	49	5	777	5	HYAL4	7	123509102	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	174334	123509102	35629561	802	87409											
SPAM1	6677	broad.mit.edu	37	chr7	123593777	123593777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatgtgcctttcctctgGgcctggaatgccccaagtga	10	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123593777	T	T	123593777	3	4	84	1	0	0	0	0	1	0	0	0	15102	1241	43	2	155	2	SPAM1	7	123593777	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	84675	123593777	35544886	803	87410											
GPR37	2861	broad.mit.edu	37	chr7	124387020	124387020	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctctgctttgcggattttCctcgcagtcactagagagca	9	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124387020	G	G	124387020	3	3	84	1	0	0	0	0	1	0	0	0	6756	854	30	4	444	4	GPR37	7	124387020	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	793243	124387020	34751643	804	87411											
POT1	25913	broad.mit.edu	37	chr7	124475596	124475596	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaagacaatgaatgtatGtaaaaaatattaatttgtaa	6	1	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124475596	A	A	124475596	1	1	84	0	1	0	0	0	0	0	0	0	12355	1392	48	4		4	POT1	7	124475596	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	88576	124475596	34663067	805	87412											
GRM8	2918	broad.mit.edu	37	chr7	126249511	126249511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatcataacgtccaggagCatctccgttttcattaaaag	7	9	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126249511	A	A	126249511	3	1	84	1	0	0	0	0	1	0	0	0	6869	710	25	3	1393	3	GRM8	7	126249511	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1773915	126249511	32889152	806	87413											
LRRC4	64101	broad.mit.edu	37	chr7	127669173	127669173	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcagtggtgtctgtcgcGggtactgccacctgcttggg	15	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127669173	T	T	127669173	2	4	84	1	0	0	0	0	0	0	0	1	9084	1103	39	1		1	LRRC4	7	127669173	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1419662	127669173	31469490	807	87414											
SND1	27044	broad.mit.edu	37	chr7	127729525	127729525	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcttgctctgacctgagTgtgtctctgctccaggatga	12	11	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127729525	G	G	127729525	1	3	84	0	1	0	0	0	0	0	0	0	14958	1711	59	5		5	SND1	7	127729525	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	60352	127729525	31409138	808	87415											
RBM28	55131	broad.mit.edu	37	chr7	127964806	127964806	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgggcacagtggctcacaCctgtaaaccgagcactttgg	12	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127964806	G	G	127964806	1	3	84	0	1	0	0	0	0	0	0	0	13236	522	18	4		4	RBM28	7	127964806	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	235281	127964806	31173857	809	87416											
METTL2B	55798	broad.mit.edu	37	chr7	128138162	128138162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacttctgcgagattacggCcgctatgacatggctcagct	11	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128138162	A	A	128138162	2	1	84	1	0	0	0	0	0	0	0	1	9593	726	26	3		3	METTL2B	7	128138162	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	173356	128138162	31000501	810	87417											
FLNC	2318	broad.mit.edu	37	chr7	128487707	128487707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcagcatcagggggacCcatcagggctggtgggcagg	16	12	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128487707	A	A	128487707	1	1	84	0	1	0	0	0	0	0	0	0	5993	638	22	2		2	FLNC	7	128487707	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	349545	128487707	30650956	811	87418											
FLNC	2318	broad.mit.edu	37	chr7	128492680	128492680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctcacagctgaatgtgGgcacctccacggacgtgtca	12	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128492680	T	T	128492680	3	4	84	1	0	0	0	0	1	0	0	0	5993	1232	43	2	6020	2	FLNC	7	128492680	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4973	128492680	30645983	812	87419											
FAM40B	57464	broad.mit.edu	37	chr7	129098167	129098167	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggtgatggagaacgaAccttggatggagagctagac	15	7	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129098167	T	T	129098167	3	4	84	1	0	0	0	0	1	0	0	0	5612	43	2	5	1188	5	FAM40B	7	129098167	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	605487	129098167	30040496	813	87420											
CPA5	93979	broad.mit.edu	37	chr7	130002838	130002838	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttttacccacagcatggtGagggaacctgggaaggatgg	15	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130002838	T	T	130002838	1	4	84	0	1	0	0	0	0	0	0	0	3825	1305	45	3		3	CPA5	7	130002838	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	904671	130002838	29135825	814	87421											
TSGA14	95681	broad.mit.edu	37	chr7	130044495	130044495	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcacctggatttcctttcCcattggtcctggcagtggtt	10	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130044495	T	T	130044495	3	4	84	1	0	0	0	0	1	0	0	0	16745	623	22	4	813	4	TSGA14	7	130044495	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	41657	130044495	29094168	815	87422											
PLXNA4	91584	broad.mit.edu	37	chr7	131832667	131832667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggatcttaccatatttaCttgctgaggtcctggagacg	12	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131832667	A	A	131832667	3	1	84	1	0	0	0	0	1	0	0	0	12217	565	20	3	852	3	PLXNA4	7	131832667	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1788172	131832667	27305996	816	87423											
PLXNA4	91584	broad.mit.edu	37	chr7	131848973	131848973	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcgggcctcgcccgtgatGgcgtcaatggggcccttctc	14	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131848973	T	T	131848973	2	4	84	1	0	0	0	0	0	0	0	1	12217	1335	47	2		2	PLXNA4	7	131848973	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	16306	131848973	27289690	817	87424											
PLXNA4	91584	broad.mit.edu	37	chr7	131887521	131887521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggccctggcaccagcCacatgcgaagtctgggtcag	14	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131887521	A	A	131887521	3	1	84	1	0	0	0	0	1	0	0	0	12217	594	21	2	3298	2	PLXNA4	7	131887521	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	38548	131887521	27251142	818	87425											
PLXNA4	91584	broad.mit.edu	37	chr7	131888117	131888117	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtcaatgttgaagtgcCcattccacacgactgtcaac	9	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131888117	T	T	131888117	3	4	84	1	0	0	0	0	1	0	0	0	12217	623	22	4	3412	4	PLXNA4	7	131888117	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	596	131888117	27250546	819	87426											
PLXNA4	91584	broad.mit.edu	37	chr7	131912379	131912379	+	Intron	DEL	C	-	-													accagctgtgaacagccaggCggggggagagaaggaggagg					rs142371428	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131912379	-	-	131912379	6	5	84	0	1	1	0	1	0	0	0	0	12217	783	27	0		0	PLXNA4	7	131912379	Intron	DEL	C	TCGA-17-Z055-01A-01W-0747-08	24262	131912379	27226284	820	87427											
PLXNA4	91584	broad.mit.edu	37	chr7	131925936	131925936	+	Intron	DEL	A	-	-													ctctggtgagctaggacagcAggatagggagaaggtggtca							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131925936	-	-	131925936	6	5	84	0	1	1	0	1	0	0	0	0	12217	203	7	0		0	PLXNA4	7	131925936	Intron	DEL	A	TCGA-17-Z055-01A-01W-0747-08	13557	131925936	27212727	821	87428											
LRGUK	136332	broad.mit.edu	37	chr7	133859261	133859261	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtattatgttttctattgTctttgtgcatttagtctgtt	7	4	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133859261	C	C	133859261	1	2	84	0	1	0	0	0	0	0	0	0	9030	1682	58	5		5	LRGUK	7	133859261	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1933325	133859261	25279402	822	87429											
SLC35B4	84912	broad.mit.edu	37	chr7	133979774	133979774	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtagggtcacgacgagcgtGacggtgagggaggcgcattc	18	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133979774	C	C	133979774	2	2	84	1	0	0	0	0	0	0	0	1	14692	1277	45	4		4	SLC35B4	7	133979774	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	120513	133979774	25158889	823	87430											
CHRM2	1129	broad.mit.edu	37	chr7	136700864	136700864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttgtgcaccttgcatcCccaacactgtgtggacaatt	7	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136700864	A	A	136700864	3	1	84	1	0	0	0	0	1	0	0	0	3408	623	22	2	1254	2	CHRM2	7	136700864	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2721090	136700864	22437799	824	87431											
PTN	5764	broad.mit.edu	37	chr7	136936177	136936177	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaacagaaatccttgaaagAtcctatcgtacttccaggat	6	10	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136936177	T	T	136936177	1	4	84	0	1	0	0	0	0	0	0	0	12874	348	12	5		5	PTN	7	136936177	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	235313	136936177	22202486	825	87432											
DGKI	9162	broad.mit.edu	37	chr7	137075986	137075986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaaacagcagtttccaggtCctcatggccaatgaccttat	7	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137075986	A	A	137075986	3	1	84	1	0	0	0	0	1	0	0	0	4511	855	30	3	23	3	DGKI	7	137075986	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	139809	137075986	22062677	826	87433											
DGKI	9162	broad.mit.edu	37	chr7	137407425	137407425	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccagacaccaggaaggtgaGatcttcgacacagaaaaaga	10	10	1	4	rs140024317		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137407425	C	C	137407425	1	2	84	0	1	0	0	0	0	0	0	0	4511	957	33	4		4	DGKI	7	137407425	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	331439	137407425	21731238	827	87434											
KLRG2	346689	broad.mit.edu	37	chr7	139164241	139164241	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggctgcacgaagttatggtCatgctactcctctacacctt	8	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139164241	T	T	139164241	1	4	84	0	1	0	0	0	0	0	0	0	8493	841	29	4		4	KLRG2	7	139164241	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1756816	139164241	19974422	828	87435											
RAB19	401409	broad.mit.edu	37	chr7	140110927	140110927	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacctctcggccgggcgCagtggctcacgcctgtaatc	12	17	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140110927	T	T	140110927	1	4	84	0	1	0	0	0	0	0	0	0	13012	725	25	4		4	RAB19	7	140110927	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	946686	140110927	19027736	829	87436											
MGAM	8972	broad.mit.edu	37	chr7	141721627	141721627	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtgtttcaacaatattcCtgaaggttgtgggcccatta	12	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141721627	T	T	141721627	1	4	84	0	1	0	0	0	0	0	0	0	9634	696	24	4		4	MGAM	7	141721627	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1610700	141721627	17417036	830	87437											
MGAM	8972	broad.mit.edu	37	chr7	141722255	141722255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagtaagctttcaaatgGgcccctttccactgaatatc	8	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141722255	T	T	141722255	1	4	84	0	1	0	0	0	0	0	0	0	9634	1247	43	2		2	MGAM	7	141722255	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	628	141722255	17416408	831	87438											
MGAM	8972	broad.mit.edu	37	chr7	141736522	141736522	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accttggcctctgtcattcaGgagggaaattcttggttgta	11	8	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141736522	C	C	141736522	1	2	84	0	1	0	0	0	0	0	0	0	9634	1015	35	4		4	MGAM	7	141736522	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	14267	141736522	17402141	832	87439											
MGAM	8972	broad.mit.edu	37	chr7	141765355	141765355	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggcagatcatgagagCctggtgtgacacagctgtgc	16	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141765355	G	G	141765355	1	3	84	0	1	0	0	0	0	0	0	0	9634	754	26	4		4	MGAM	7	141765355	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	28833	141765355	17373308	833	87440											
MGAM	8972	broad.mit.edu	37	chr7	141780535	141780535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaaaaaggttctgctaAgggtataggtttcaagagta	10	4	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141780535	T	T	141780535	1	4	84	0	1	0	0	0	0	0	0	0	9634	87	3	5		5	MGAM	7	141780535	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	15180	141780535	17358128	834	87441											
MGAM	8972	broad.mit.edu	37	chr7	141796232	141796232	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcgtgtgagtatggaggcctCcgatgaggggaggatcccag	18	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141796232	G	G	141796232	1	3	84	0	1	0	0	0	0	0	0	0	9634	870	30	4		4	MGAM	7	141796232	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	15697	141796232	17342431	835	87442											
EPHB6	2051	broad.mit.edu	37	chr7	142562017	142562017	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacctcaaacgctggacCaaggtggacacaattgcagc	11	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142562017	A	A	142562017	2	1	84	1	0	0	0	0	0	0	0	1	5220	581	21	2		2	EPHB6	7	142562017	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	765785	142562017	16576646	836	87443											
TRPV6	55503	broad.mit.edu	37	chr7	142574403	142574403	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgtccccatccccaccctGaggtcttcctgaaggtccca	8	17	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142574403	C	C	142574403	1	2	84	0	1	0	0	0	0	0	0	0	16725	1305	45	4		4	TRPV6	7	142574403	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	12386	142574403	16564260	837	87444											
TRPV6	55503	broad.mit.edu	37	chr7	142574948	142574948	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagtgcctgtggctctgGcagagacactggccctgcgg	16	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142574948	A	A	142574948	3	1	84	1	0	0	0	0	1	0	0	0	16725	1203	42	4	1791	4	TRPV6	7	142574948	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	545	142574948	16563715	838	87445											
TRPV5	56302	broad.mit.edu	37	chr7	142625473	142625473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcatctacaagctttcCcttttttgtcatctttcctg	4	13	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142625473	T	T	142625473	1	4	84	0	1	0	0	0	0	0	0	0	16724	638	22	4		4	TRPV5	7	142625473	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	50525	142625473	16513190	839	87446											
TRPV5	56302	broad.mit.edu	37	chr7	142627051	142627051	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccatcctcctgaccctccAtcaccccaccccaacccatc	2	25	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142627051	G	G	142627051	1	3	84	0	1	0	0	0	0	0	0	0	16724	232	8	5		5	TRPV5	7	142627051	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1578	142627051	16511612	840	87447											
KEL	3792	broad.mit.edu	37	chr7	142659257	142659257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagccaccctcacccctcCccgctaagcctctgactcca	4	23	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142659257	A	A	142659257	1	1	84	0	1	0	0	0	0	0	0	0	8212	638	22	2		2	KEL	7	142659257	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	32206	142659257	16479406	841	87448											
OR9A2	135924	broad.mit.edu	37	chr7	142723539	142723539	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggctttcctccggccagaGgctgacgggatcttgaggat	14	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142723539	A	A	142723539	2	1	84	1	0	0	0	0	0	0	0	1	11342	987	35	4		4	OR9A2	7	142723539	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	64282	142723539	16415124	842	87449											
OR6V1	346517	broad.mit.edu	37	chr7	142749819	142749819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggccatctgccacccaCtgcgctatggcactctgatg	10	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142749819	A	A	142749819	3	1	84	1	0	0	0	0	1	0	0	0	11305	564	20	3	384	3	OR6V1	7	142749819	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	26280	142749819	16388844	843	87450											
CLCN1	1180	broad.mit.edu	37	chr7	143029488	143029488	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagttggctgaattgtggCggttaactctgtttcttttt	12	5	2	2	rs139370833	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143029488	A	A	143029488	1	1	84	0	1	0	0	0	0	0	0	0	3493	783	27	3		3	CLCN1	7	143029488	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	279669	143029488	16109175	844	87451											
CLCN1	1180	broad.mit.edu	37	chr7	143043575	143043575	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggtgaggtacctgggaagTgcagctctttggaggcaaat	16	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143043575	A	A	143043575	1	1	84	0	1	0	0	0	0	0	0	0	3493	1711	59	5		5	CLCN1	7	143043575	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	14087	143043575	16095088	845	87452											
CNTNAP2	26047	broad.mit.edu	37	chr7	146826035	146826035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacatttttcatcatatttGtgtttgggcaaaatgatgta	8	4	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146826035	T	T	146826035	1	4	84	0	1	0	0	0	0	0	0	0	3679	1392	48	3		3	CNTNAP2	7	146826035	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3782460	146826035	12312628	846	87453											
C7orf33	202865	broad.mit.edu	37	chr7	148288076	148288076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctggagacttccaggccCccaatgtgaatgtgaagccc	10	14	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148288076	A	A	148288076	3	1	84	1	0	0	0	0	1	0	0	0	2413	623	22	2	61	2	C7orf33	7	148288076	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1462041	148288076	10850587	847	87454											
ZNF862	643641	broad.mit.edu	37	chr7	149559100	149559100	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaagaacatggaggtgtttGacaccatggcctggccaagt	13	8	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149559100	C	C	149559100	3	2	84	1	0	0	0	0	1	0	0	0	18324	1290	45	4	2877	4	ZNF862	7	149559100	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1271024	149559100	9579563	848	87455											
GIMAP4	55303	broad.mit.edu	37	chr7	150269488	150269488	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcgctgcattcttctgacCtccccagggcctcatgctct	7	16	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150269488	T	T	150269488	2	4	84	1	0	0	0	0	0	0	0	1	6445	668	24	4		4	GIMAP4	7	150269488	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	710388	150269488	8869175	849	87456											
GIMAP6	474344	broad.mit.edu	37	chr7	150325647	150325647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactggggtaagggcccatGtaccccatcttgtcatcacc	10	13	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150325647	A	A	150325647	1	1	84	0	1	0	0	0	0	0	0	0	6447	1392	48	4		4	GIMAP6	7	150325647	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	56159	150325647	8813016	850	87457											
AGAP3	116988	broad.mit.edu	37	chr7	150815200	150815200	+	Intron	DEL	G	-	-													tctgtgtgttccactcaccaGgccctttgcacacctgccct							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150815200	-	-	150815200	6	5	84	0	1	1	0	1	0	0	0	0	369	1015	35	0		0	AGAP3	7	150815200	Intron	DEL	G	TCGA-17-Z055-01A-01W-0747-08	489553	150815200	8323463	851	87458											
GBX1	2636	broad.mit.edu	37	chr7	150864102	150864102	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccctagcacttaccgggCagacttggaaaagtctctga	11	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150864102	A	A	150864102	2	1	84	1	0	0	0	0	0	0	0	1	6342	697	25	3		3	GBX1	7	150864102	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	48902	150864102	8274561	852	87459											
GALNTL5	168391	broad.mit.edu	37	chr7	151700085	151700085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggaaaaatatagcataCgtgtattgagacccaggggg	12	5	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151700085	A	A	151700085	1	1	84	0	1	0	0	0	0	0	0	0	6286	551	19	3		3	GALNTL5	7	151700085	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	835983	151700085	7438578	853	87460											
MLL3	58508	broad.mit.edu	37	chr7	151927301	151927301	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagtaaattgtcaagttcAaacctgattcaaagtgaact	7	7	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151927301	G	G	151927301	1	3	84	0	1	0	0	0	0	0	0	0	9715	145	5	5		5	MLL3	7	151927301	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	227216	151927301	7211362	854	87461											
MLL3	58508	broad.mit.edu	37	chr7	151935785	151935785	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgaatgtaaatgcaatttTatttaccactttgatgctcc	5	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151935785	A	A	151935785	1	1	84	0	1	0	0	0	0	0	0	0	9715	1769	61	5		5	MLL3	7	151935785	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	8484	151935785	7202878	855	87462											
DPP6	1804	broad.mit.edu	37	chr7	154264015	154264015	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacccgtgagtattatccTttactgcctacaaaataatt	6	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154264015	G	G	154264015	1	3	84	0	1	0	0	0	0	0	0	0	4770	1624	56	5		5	DPP6	7	154264015	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2328230	154264015	4874648	856	87463											
DPP6	1804	broad.mit.edu	37	chr7	154379867	154379867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagacacgctgtcatcaggCccaagaaatactgccttccc	8	14	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154379867	T	T	154379867	1	4	84	0	1	0	0	0	0	0	0	0	4770	754	26	4		4	DPP6	7	154379867	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	115852	154379867	4758796	857	87464											
DPP6	1804	broad.mit.edu	37	chr7	154679379	154679379	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctccctccctttgcttcCgtgcagcctctgcgttttcc	6	18	1	0	rs146390250	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154679379	T	T	154679379	1	4	84	0	1	0	0	0	0	0	0	0	4770	667	23	4		4	DPP6	7	154679379	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	299512	154679379	4459284	858	87465											
DPP6	1804	broad.mit.edu	37	chr7	154684293	154684293	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggcggggcggggcggGgccgggtgttccatagcatg	24	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154684293	A	A	154684293	1	1	84	0	1	0	0	0	0	0	0	0	4770	1247	43	4		4	DPP6	7	154684293	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4914	154684293	4454370	859	87466											
UBE3C	9690	broad.mit.edu	37	chr7	156974174	156974174	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcccttattacaggaAaaggcactaaattttaaata	4	6	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156974174	G	G	156974174	1	3	84	0	1	0	0	0	0	0	0	0	17007	29	1	5		5	UBE3C	7	156974174	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2289881	156974174	2164489	860	87467											
CSMD1	64478	broad.mit.edu	37	chr8	3263598	3263598	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accacgttcccgtcttgcagTatgcaggtaatggactcgga	11	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3263598	A	A	3263598	2	1	84	1	0	0	0	0	0	0	0	1	3978	1628	57	5		5	CSMD1	8	3263598	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08		3263598	143100424	861	87468											
ANGPT2	285	broad.mit.edu	37	chr8	6371302	6371302	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaagcacatagcgttgctGattagtcagttgcgaaacaa	9	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6371302	T	T	6371302	3	4	84	1	0	0	0	0	1	0	0	0	611	1299	45	3	406	3	ANGPT2	8	6371302	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3107704	6371302	139992720	862	87469											
DEFA4	1669	broad.mit.edu	37	chr8	6793705	6793705	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaaattaagcaccaaggtCagcggtgggtggtaaaggga	16	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6793705	A	A	6793705	1	1	84	0	1	0	0	0	0	0	0	0	4424	841	29	3		3	DEFA4	8	6793705	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	422403	6793705	139570317	863	87470											
RP1L1	94137	broad.mit.edu	37	chr8	10467245	10467245	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccgtctcgctgagatgacTagggggctctgtgggttcct	15	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10467245	A	A	10467245	3	1	84	1	0	0	0	0	1	0	0	0	13644	1522	53	5	2843	5	RP1L1	8	10467245	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3673540	10467245	135896777	864	87471											
RP1L1	94137	broad.mit.edu	37	chr8	10469636	10469636	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcctctcggggccactcGgccaaggccagggctgctgg	16	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10469636	T	T	10469636	2	4	84	1	0	0	0	0	0	0	0	1	13644	1124	39	1		1	RP1L1	8	10469636	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2391	10469636	135894386	865	87472											
BLK	640	broad.mit.edu	37	chr8	11405588	11405588	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actacaccgctatgaatgatCgggacctgcagatgctgaag	11	10	0	4	rs149393791	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11405588	A	A	11405588	2	1	84	1	0	0	0	0	0	0	0	1	1450	875	31	3		3	BLK	8	11405588	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	935952	11405588	134958434	866	87473											
TUSC3	7991	broad.mit.edu	37	chr8	15601139	15601139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtaagtctctgtgttgcCatttttgtaatttcgtttta	9	5	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15601139	A	A	15601139	1	1	84	0	1	0	0	0	0	0	0	0	16904	609	21	2		2	TUSC3	8	15601139	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4195551	15601139	130762883	867	87474											
MTUS1	57509	broad.mit.edu	37	chr8	17573163	17573163	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatctcctttctcaacataTttgtaatcattgttgactat	3	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17573163	C	C	17573163	1	2	84	0	1	0	0	0	0	0	0	0	10059	1508	52	5		5	MTUS1	8	17573163	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1972024	17573163	128790859	868	87475											
INTS10	55174	broad.mit.edu	37	chr8	19680970	19680970	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtaagtaggaataccctGtacttttacttaaataggct	8	6	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19680970	C	C	19680970	1	2	84	0	1	0	0	0	0	0	0	0	7846	1392	48	4		4	INTS10	8	19680970	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2107807	19680970	126683052	869	87476											
ATP6V1B2	526	broad.mit.edu	37	chr8	20066915	20066915	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggcttgtaaaatgtcggAtattgatcctttattttttt	10	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20066915	G	G	20066915	1	3	84	0	1	0	0	0	0	0	0	0	1183	348	12	5		5	ATP6V1B2	8	20066915	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	385945	20066915	126297107	870	87477											
LGI3	203190	broad.mit.edu	37	chr8	22012902	22012902	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccacaaggccctatccaTacaagaactgcagcagcggg	9	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22012902	C	C	22012902	1	2	84	0	1	0	0	0	0	0	0	0	8825	1421	49	5		5	LGI3	8	22012902	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1945987	22012902	124351120	871	87478											
DOCK5	80005	broad.mit.edu	37	chr8	25231992	25231992	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatactgcagcctgggcAatacagcaagaccctgtctc	9	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25231992	T	T	25231992	1	4	84	0	1	0	0	0	0	0	0	0	4730	145	5	5		5	DOCK5	8	25231992	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3219090	25231992	121132030	872	87479											
ADRA1A	148	broad.mit.edu	37	chr8	26721813	26721813	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgctccgagtccgacttgTcggtcttgaggccagacttg	12	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26721813	A	A	26721813	3	1	84	1	0	0	0	0	1	0	0	0	334	1667	58	5	1025	5	ADRA1A	8	26721813	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1489821	26721813	119642209	873	87480											
PNOC	5368	broad.mit.edu	37	chr8	28186658	28186658	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtatgttccagcacctgCttcctgctcctgcaccatga	7	16	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28186658	G	G	28186658	1	3	84	0	1	0	0	0	0	0	0	0	12257	812	28	4		4	PNOC	8	28186658	5'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1464845	28186658	118177364	874	87481											
TEX15	56154	broad.mit.edu	37	chr8	30695554	30695554	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggtactattttgttttcgCttttgggatgagatcctgta	10	5	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30695554	T	T	30695554	3	4	84	1	0	0	0	0	1	0	0	0	15901	797	28	4	1280	4	TEX15	8	30695554	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2508896	30695554	115668468	875	87482											
UNC5D	137970	broad.mit.edu	37	chr8	35583603	35583603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgcgcagtttgcagagGcagaagtacaggagtaactg	14	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35583603	T	T	35583603	1	4	84	0	1	0	0	0	0	0	0	0	17121	1218	42	3		3	UNC5D	8	35583603	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4888049	35583603	110780419	876	87483											
KCNU1	157855	broad.mit.edu	37	chr8	36779958	36779958	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatggatggcacttcttaTattcttaacctgatctgctt	7	9	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779958	A	A	36779958	1	1	84	0	1	0	0	0	0	0	0	0	8163	1421	49	5		5	KCNU1	8	36779958	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1196355	36779958	109584064	877	87484											
KCNU1	157855	broad.mit.edu	37	chr8	36793164	36793164	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaagtcatatgaaattgTaaataaagcatcacagacaa	6	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36793164	G	G	36793164	3	3	84	1	0	0	0	0	1	0	0	0	8163	1638	57	5	3282	5	KCNU1	8	36793164	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	13206	36793164	109570858	878	87485											
ANK1	286	broad.mit.edu	37	chr8	41585513	41585513	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcagcgatgtgcagggcCgtgttccccttctgaaacac	12	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41585513	A	A	41585513	2	1	84	1	0	0	0	0	0	0	0	1	620	639	23	1		1	ANK1	8	41585513	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4792349	41585513	104778509	879	87486											
PLAT	5327	broad.mit.edu	37	chr8	42038173	42038173	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctttgatgcgaaactgaGgctggctgtactgtctcagg	12	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42038173	A	A	42038173	3	1	84	1	0	0	0	0	1	0	0	0	12116	1000	35	4	788	4	PLAT	8	42038173	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	452660	42038173	104325849	880	87487											
HOOK3	84376	broad.mit.edu	37	chr8	42828543	42828543	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcaaaaagaaaaggacGtgagtatatatattaggcat	9	4	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42828543	T	T	42828543	5	4	84	1	0	0	0	0	0	0	1	0	7351	1159	40	3	1280	3	HOOK3	8	42828543	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	790370	42828543	103535479	881	87488											
PRKDC	5591	broad.mit.edu	37	chr8	48711809	48711809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcgcagctgttggtcaCagaaatctgccagcgtcatg	11	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48711809	A	A	48711809	3	1	84	1	0	0	0	0	1	0	0	0	12627	478	17	3	2187	3	PRKDC	8	48711809	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5883266	48711809	97652213	882	87489											
SNTG1	54212	broad.mit.edu	37	chr8	51617208	51617208	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgcttcaccgtgcagtctGagtctggggaggacctgtac	14	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51617208	C	C	51617208	3	2	84	1	0	0	0	0	1	0	0	0	14988	1291	45	4	1141	4	SNTG1	8	51617208	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2905399	51617208	94746814	883	87490											
SNTG1	54212	broad.mit.edu	37	chr8	51675248	51675248	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctgacctgtcttctacccGaagagaccatggagattagg	11	11	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51675248	T	T	51675248	1	4	84	0	1	0	0	0	0	0	0	0	14988	1073	37	3		3	SNTG1	8	51675248	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	58040	51675248	94688774	884	87491											
PXDNL	137902	broad.mit.edu	37	chr8	52233300	52233301	+	Intron	INS	-	GGG	GGG													atgcttcaactggctggctaINSgaagtgaaatggggagttgg					rs57356169		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGG	52233301	GGG	GGG	52233300	6	5	84	0	1	1	1	0	0	0	0	0	12956	435	15	0		0	PXDNL	8	52233300	Intron	INS	-	TCGA-17-Z055-01A-01W-0747-08	558052	52233300	94130722	885	87492											
ATP6V1H	51606	broad.mit.edu	37	chr8	54714354	54714354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacattaaaaggaaagggcaCtcaccaatttaccccatctg	6	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54714354	A	A	54714354	1	1	84	0	1	0	0	0	0	0	0	0	1193	580	20	3		3	ATP6V1H	8	54714354	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2481054	54714354	91649668	886	87493											
RP1	6101	broad.mit.edu	37	chr8	55533650	55533650	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagcgaatcagtttctacAagagcggagacccccaattc	8	13	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55533650	T	T	55533650	4	4	84	1	0	0	0	0	0	1	0	0	13643	131	5	5	126	5	RP1	8	55533650	Nonsense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	819296	55533650	90830372	887	87494											
PLAG1	5324	broad.mit.edu	37	chr8	57079580	57079580	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactggttctgttttgaccTtcagaagctcttgattgtga	9	9	3	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57079580	C	C	57079580	3	2	84	1	0	0	0	0	1	0	0	0	12113	1609	56	5	781	5	PLAG1	8	57079580	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1545930	57079580	89284442	888	87495											
UBXN2B	137886	broad.mit.edu	37	chr8	59337991	59337991	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgttacacttggtttcaaAtttgggcatgatgatatttg	9	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59337991	T	T	59337991	1	4	84	0	1	0	0	0	0	0	0	0	17041	116	4	5		5	UBXN2B	8	59337991	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2258411	59337991	87026031	889	87496											
CYP7A1	1581	broad.mit.edu	37	chr8	59410854	59410854	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggcacaacaccttatgGtatgacaagggatttgtgat	11	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59410854	T	T	59410854	4	4	84	1	0	0	0	0	0	1	0	0	4229	1256	44	3	1279	3	CYP7A1	8	59410854	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	72863	59410854	86953168	890	87497											
NKAIN3	286183	broad.mit.edu	37	chr8	63768262	63768262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcacttctgcatgtgaaGcggagcttctgaacgatagc	11	10	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63768262	T	T	63768262	1	4	84	0	1	0	0	0	0	0	0	0	10532	986	34	3		3	NKAIN3	8	63768262	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4357408	63768262	82595760	891	87498											
CPA6	57094	broad.mit.edu	37	chr8	68340384	68340384	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctatgagggaaaatgggGaaattttatatattgttgca	10	3	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68340384	T	T	68340384	1	4	84	0	1	0	0	0	0	0	0	0	3826	1189	41	3		3	CPA6	8	68340384	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4572122	68340384	78023638	892	87499											
PREX2	80243	broad.mit.edu	37	chr8	69136719	69136720	+	Intron	DEL	AC	-	-													attgtttgaataagtatcctAcacacaaatgttaatggtat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69136720	-	-	69136719	6	5	84	0	1	1	0	1	0	0	0	0	12583	406	14	0		0	PREX2	8	69136719	Intron	DEL	AC	TCGA-17-Z055-01A-01W-0747-08	796335	69136719	77227303	893	87500											
SLCO5A1	81796	broad.mit.edu	37	chr8	70585148	70585148	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctctcttccagccccgGgtccgcagaggaacttattg	13	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70585148	A	A	70585148	3	1	84	1	0	0	0	0	1	0	0	0	14845	1232	43	4	47	4	SLCO5A1	8	70585148	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1448429	70585148	75778874	894	87501											
NCOA2	10499	broad.mit.edu	37	chr8	71075713	71075713	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttaccttggagatcctgGcgagtagtaaaactttctga	9	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71075713	A	A	71075713	2	1	84	1	0	0	0	0	0	0	0	1	10324	1190	42	4		4	NCOA2	8	71075713	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	490565	71075713	75288309	895	87502											
NCOA2	10499	broad.mit.edu	37	chr8	71087017	71087017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcataggccccagcgcatCcttgtcgatgacaccctgcc	8	17	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71087017	A	A	71087017	3	1	84	1	0	0	0	0	1	0	0	0	10324	855	30	3	4133	3	NCOA2	8	71087017	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	11304	71087017	75277005	896	87503											
TRPA1	8989	broad.mit.edu	37	chr8	72984106	72984106	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttccttcaaaaaccacctaGaggtatttaaacaccattat	3	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72984106	C	C	72984106	1	2	84	0	1	0	0	0	0	0	0	0	16702	957	33	4		4	TRPA1	8	72984106	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1897089	72984106	73379916	897	87504											
RPL7	6129	broad.mit.edu	37	chr8	74205838	74205838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagaagcaactcactctaCaccctccatggttccagccg	6	17	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74205838	A	A	74205838	3	1	84	1	0	0	0	0	1	0	0	0	13710	478	17	3	760	3	RPL7	8	74205838	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1221732	74205838	72158184	898	87505											
ZFHX4	79776	broad.mit.edu	37	chr8	77617836	77617836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatttccctctcttaaacCaaagcatttctcctttatca	2	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77617836	A	A	77617836	3	1	84	1	0	0	0	0	1	0	0	0	17761	595	21	2	1515	2	ZFHX4	8	77617836	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3411998	77617836	68746186	899	87506											
ZFHX4	79776	broad.mit.edu	37	chr8	77763844	77763844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttggtccactataattcaGtttctcacttgcataagctg	6	10	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763844	A	A	77763844	3	1	84	1	0	0	0	0	1	0	0	0	17761	1029	36	4	4721	4	ZFHX4	8	77763844	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	146008	77763844	68600178	900	87507											
ZFAND1	79752	broad.mit.edu	37	chr8	82626241	82626241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactatttttggcacctttcCatcgtttacttgctgtttct	5	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82626241	A	A	82626241	3	1	84	1	0	0	0	0	1	0	0	0	17752	595	21	2	474	2	ZFAND1	8	82626241	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4862397	82626241	63737781	901	87508											
CPNE3	8895	broad.mit.edu	37	chr8	87541165	87541165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttttgtttttgcggatGggtgtaggttgagcgcacag	14	5	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87541165	T	T	87541165	1	4	84	0	1	0	0	0	0	0	0	0	3845	1363	47	2		2	CPNE3	8	87541165	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4914924	87541165	58822857	902	87509											
CNGB3	54714	broad.mit.edu	37	chr8	87591486	87591486	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgctagaaggctgtaAgagagaaaaatgagtctttg	12	6	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87591486	T	T	87591486	1	4	84	0	1	0	0	0	0	0	0	0	3633	87	3	5		5	CNGB3	8	87591486	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	50321	87591486	58772536	903	87510											
MMP16	4325	broad.mit.edu	37	chr8	89209477	89209477	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcatggtctctgcagagCgcagcactgacattctgggg	13	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89209477	T	T	89209477	3	4	84	1	0	0	0	0	1	0	0	0	9748	768	27	4	1824	4	MMP16	8	89209477	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1617991	89209477	57154545	904	87511											
NBN	4683	broad.mit.edu	37	chr8	90976613	90976613	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cataataaagttgctaacgaAtcaataaaataatgcttcaa	4	6	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90976613	G	G	90976613	1	3	84	0	1	0	0	0	0	0	0	0	10285	116	4	5		5	NBN	8	90976613	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1767136	90976613	55387409	905	87512											
SLC26A7	115111	broad.mit.edu	37	chr8	92261991	92261991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgcccattttggattggGcaccacattacaatctgaaa	8	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92261991	T	T	92261991	3	4	84	1	0	0	0	0	1	0	0	0	14636	1203	42	3	114	3	SLC26A7	8	92261991	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1285378	92261991	54102031	906	87513											
RUNX1T1	862	broad.mit.edu	37	chr8	93088331	93088331	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccttttctgactgggacaGagattatgttcaccagccca	8	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93088331	C	C	93088331	1	2	84	0	1	0	0	0	0	0	0	0	13858	957	33	4		4	RUNX1T1	8	93088331	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	826340	93088331	53275691	907	87514											
RBM12B	389677	broad.mit.edu	37	chr8	94748694	94748694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaggtacacataatagCaagtcttatttttgaagtac	6	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94748694	A	A	94748694	1	1	84	0	1	0	0	0	0	0	0	0	13222	725	25	3		3	RBM12B	8	94748694	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1660363	94748694	51615328	908	87515											
CDH17	1015	broad.mit.edu	37	chr8	95174219	95174219	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttacctgttaagtctggcActtttcctagctactgtctg	9	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95174219	T	T	95174219	1	4	84	0	1	0	0	0	0	0	0	0	3132	174	6	5		5	CDH17	8	95174219	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	425525	95174219	51189803	909	87516											
CDH17	1015	broad.mit.edu	37	chr8	95186170	95186170	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggcctcccatgtccttcActgagatcaccagattatag	7	13	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95186170	T	T	95186170	3	4	84	1	0	0	0	0	1	0	0	0	3132	159	6	5	1908	5	CDH17	8	95186170	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	11951	95186170	51177852	910	87517											
KIAA1429	25962	broad.mit.edu	37	chr8	95502247	95502247	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacgactttcattgtaatttCctcgaggagtattctgagca	8	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95502247	T	T	95502247	3	4	84	1	0	0	0	0	1	0	0	0	8301	855	30	4	242	4	KIAA1429	8	95502247	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	316077	95502247	50861775	911	87518											
TSPYL5	85453	broad.mit.edu	37	chr8	98289596	98289596	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagctatgacctgaggCcccctccccgcggtgctaca	9	19	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98289596	T	T	98289596	2	4	84	1	0	0	0	0	0	0	0	1	16787	726	26	4		4	TSPYL5	8	98289596	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2787349	98289596	48074426	912	87519											
VPS13B	157680	broad.mit.edu	37	chr8	100245424	100245424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacttcctcattttcatcGggcgtttggtcacgaggcac	9	12	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100245424	T	T	100245424	1	4	84	0	1	0	0	0	0	0	0	0	17317	1131	39	1		1	VPS13B	8	100245424	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1955828	100245424	46118598	913	87520											
ANKRD46	157567	broad.mit.edu	37	chr8	101563906	101563906	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaggtgcccaatatggCccaaatctatttactctggc	8	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101563906	G	G	101563906	1	3	84	0	1	0	0	0	0	0	0	0	674	754	26	4		4	ANKRD46	8	101563906	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1318482	101563906	44800116	914	87521											
KLF10	7071	broad.mit.edu	37	chr8	103663859	103663859	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgaccgtctctgaggaaGgcacagaaaagtcataaagt	11	7	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103663859	A	A	103663859	3	1	84	1	0	0	0	0	1	0	0	0	8409	1000	35	4	749	4	KLF10	8	103663859	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2099953	103663859	42700163	915	87522											
RIMS2	9699	broad.mit.edu	37	chr8	104570882	104570882	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttgtcgttggttttGctttttttaaacaggatttt	7	3	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104570882	C	C	104570882	1	2	84	0	1	0	0	0	0	0	0	0	13479	1334	46	4		4	RIMS2	8	104570882	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	907023	104570882	41793140	916	87523											
RIMS2	9699	broad.mit.edu	37	chr8	104928756	104928756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagaacttgtagtttcaaGgcctattgggtaagttggtt	12	4	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104928756	T	T	104928756	3	4	84	1	0	0	0	0	1	0	0	0	13479	1000	35	2	2183	2	RIMS2	8	104928756	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	357874	104928756	41435266	917	87524											
LRP12	29967	broad.mit.edu	37	chr8	105578361	105578361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgggattggctatatgCaagagtccataagagaggct	13	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105578361	A	A	105578361	1	1	84	0	1	0	0	0	0	0	0	0	9041	725	25	3		3	LRP12	8	105578361	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	649605	105578361	40785661	918	87525											
ANGPT1	284	broad.mit.edu	37	chr8	108509556	108509556	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtttctgggaagagaaAtccggttccacgtgtggagc	14	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108509556	T	T	108509556	3	4	84	1	0	0	0	0	1	0	0	0	610	98	4	5	1301	5	ANGPT1	8	108509556	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2931195	108509556	37854466	919	87526											
PKHD1L1	93035	broad.mit.edu	37	chr8	110509297	110509297	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatggaatttattttcagGtaattatgattaaagatggt	8	1	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110509297	T	T	110509297	5	4	84	1	0	0	0	0	0	0	1	0	12067	1275	44	3	10731	3	PKHD1L1	8	110509297	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1999741	110509297	35854725	920	87527											
CSMD3	114788	broad.mit.edu	37	chr8	113246670	113246670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactttaataagatatatgCgtaacattaggcgagcttcc	8	7	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113246670	A	A	113246670	3	1	84	1	0	0	0	0	1	0	0	0	3980	768	27	3	475	3	CSMD3	8	113246670	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2737373	113246670	33117352	921	87528											
CSMD3	114788	broad.mit.edu	37	chr8	113316852	113316852	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaccatattagtaatgtcatCcaattattgatctaatgtgt	6	6	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113316852	T	T	113316852	1	4	84	0	1	0	0	0	0	0	0	0	3980	870	30	4		4	CSMD3	8	113316852	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	70182	113316852	33047170	922	87529											
CSMD3	114788	broad.mit.edu	37	chr8	113317128	113317128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagataaaggaattgatGcttggacatgtaacaactat	8	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113317128	T	T	113317128	3	4	84	1	0	0	0	0	1	0	0	0	3980	1310	46	3	3115	3	CSMD3	8	113317128	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	276	113317128	33046894	923	87530											
CSMD3	114788	broad.mit.edu	37	chr8	113599536	113599536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaagcaatatcatgtatGgaagtgttatgcattttatt	7	4	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113599536	T	T	113599536	1	4	84	0	1	0	0	0	0	0	0	0	3980	1363	47	2		2	CSMD3	8	113599536	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	282408	113599536	32764486	924	87531											
UTP23	84294	broad.mit.edu	37	chr8	117784191	117784191	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatgaacccatatgcttTagctaaaattaattataaaa	4	5	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117784191	A	A	117784191	1	1	84	0	1	0	0	0	0	0	0	0	17227	1769	61	5		5	UTP23	8	117784191	3'UTR	SNP	T	TCGA-17-Z055-01A-01W-0747-08	4184655	117784191	28579831	925	87532											
RAD21	5885	broad.mit.edu	37	chr8	117869756	117869756	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtttagaaagattagaaaTagcactgtgataaaagaaaa	8	2	0	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117869756	C	C	117869756	1	2	84	0	1	0	0	0	0	0	0	0	13089	1421	49	5		5	RAD21	8	117869756	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	85565	117869756	28494266	926	87533											
SLC30A8	169026	broad.mit.edu	37	chr8	118165140	118165140	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtctgtgaatctagctgCattctgggaccttaacacag	9	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118165140	G	G	118165140	1	3	84	0	1	0	0	0	0	0	0	0	14675	725	25	4		4	SLC30A8	8	118165140	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	295384	118165140	28198882	927	87534											
TAF2	6873	broad.mit.edu	37	chr8	120774807	120774807	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgtaacagagttggcCagggcatcaatcatttctgc	12	9	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120774807	A	A	120774807	2	1	84	1	0	0	0	0	0	0	0	1	15643	581	21	2		2	TAF2	8	120774807	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2609667	120774807	25589215	928	87535											
ATAD2	29028	broad.mit.edu	37	chr8	124371467	124371467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataattaaattaccttgggGgttgaattttaaatttttca	6	3	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124371467	T	T	124371467	3	4	84	1	0	0	0	0	1	0	0	0	1075	1232	43	2	2868	2	ATAD2	8	124371467	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3596660	124371467	21992555	929	87536											
FAM91A1	157769	broad.mit.edu	37	chr8	124787528	124787528	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accattttcatattatactgGgattatggaggtgagtttac	9	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124787528	C	C	124787528	3	2	84	1	0	0	0	0	1	0	0	0	5708	1232	43	4	309	4	FAM91A1	8	124787528	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	416061	124787528	21576494	930	87537											
FER1L6	654463	broad.mit.edu	37	chr8	125115453	125115453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaaagcctgtgatcttgCcaagtttgaaaatgcaagtg	10	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125115453	A	A	125115453	3	1	84	1	0	0	0	0	1	0	0	0	5872	739	26	3	5342	3	FER1L6	8	125115453	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	327925	125115453	21248569	931	87538											
ZNF572	137209	broad.mit.edu	37	chr8	125988733	125988733	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaagaaatgccactgacaTgggttcaagatgagatttgg	11	6	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125988733	G	G	125988733	3	3	84	1	0	0	0	0	1	0	0	0	18131	1464	51	5	229	5	ZNF572	8	125988733	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	873280	125988733	20375289	932	87539											
PHF20L1	51105	broad.mit.edu	37	chr8	133849048	133849048	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacggtgttttatttctttActgactgtactactgaagat	7	7	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133849048	G	G	133849048	1	3	84	0	1	0	0	0	0	0	0	0	11927	406	14	5		5	PHF20L1	8	133849048	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	7860315	133849048	12514974	933	87540											
TG	7038	broad.mit.edu	37	chr8	133913517	133913517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggctgagggtggccgtGggtggtgaggagggtgattg	25	3	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133913517	T	T	133913517	1	4	84	0	1	0	0	0	0	0	0	0	15936	1363	47	2		2	TG	8	133913517	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	64469	133913517	12450505	934	87541											
TG	7038	broad.mit.edu	37	chr8	133980047	133980047	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcctgtaggttgtgtgCaggagcactctttctgtcag	12	9	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133980047	T	T	133980047	4	4	84	1	0	0	0	0	0	1	0	0	15936	711	25	4	5817	4	TG	8	133980047	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	66530	133980047	12383975	935	87542											
FAM135B	51059	broad.mit.edu	37	chr8	139164761	139164761	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttagggaagacctaatatCtaagggctccctcagggtag	11	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139164761	G	G	139164761	3	3	84	1	0	0	0	0	1	0	0	0	5495	913	32	4	2295	4	FAM135B	8	139164761	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5184714	139164761	7199261	936	87543											
FAM135B	51059	broad.mit.edu	37	chr8	139165438	139165438	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactggaacatcaaaattaGgataaacactcaagttatgc	6	8	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139165438	A	A	139165438	3	1	84	1	0	0	0	0	1	0	0	0	5495	1000	35	4	2972	4	FAM135B	8	139165438	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	677	139165438	7198584	937	87544											
FAM135B	51059	broad.mit.edu	37	chr8	139323180	139323180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacctaagaaaagagaagaGgacagggtgctgaagatcag	13	5	1	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139323180	A	A	139323180	1	1	84	0	1	0	0	0	0	0	0	0	5495	1015	35	4		4	FAM135B	8	139323180	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	157742	139323180	7040842	938	87545											
COL22A1	169044	broad.mit.edu	37	chr8	139668133	139668133	+	Intron	SNP	C	A	A													acatgcgcatttattgtatgCttttaccttagccaagagat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139668133	A	A	139668133	1	1	84	0	1	0	0	0	0	0	0	0	3713	812	28	3		3	COL22A1	8	139668133	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	344953	139668133	6695889	939	87546	392	2									
COL22A1	169044	broad.mit.edu	37	chr8	139668138	139668138	+	Splice_Site	SNP	A	C	C													cgcatttattgtatgcttttAccttagccaagagatttatg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139668138	C	C	139668138	5	2	84	1	0	0	0	0	0	0	1	0	3713	405	14	5	1629	5	COL22A1	8	139668138	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	5	139668138	6695884	940	87547	392	2									
COL22A1	169044	broad.mit.edu	37	chr8	139675980	139675980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctggtggtccggaagGgccctagaaacaaacaaaca	11	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139675980	T	T	139675980	3	4	84	1	0	0	0	0	1	0	0	0	3713	1232	43	2	1822	2	COL22A1	8	139675980	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7842	139675980	6688042	941	87548											
COL22A1	169044	broad.mit.edu	37	chr8	139729136	139729136	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgcaataaaacataccCcattattctccattcacttt	1	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139729136	T	T	139729136	1	4	84	0	1	0	0	0	0	0	0	0	3713	638	22	4		4	COL22A1	8	139729136	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	53156	139729136	6634886	942	87549											
COL22A1	169044	broad.mit.edu	37	chr8	139825091	139825091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatgtctccctgaccacCaaccacccaaccctaagctc	6	18	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139825091	A	A	139825091	1	1	84	0	1	0	0	0	0	0	0	0	3713	609	21	2		2	COL22A1	8	139825091	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	95955	139825091	6538931	943	87550											
COL22A1	169044	broad.mit.edu	37	chr8	139890307	139890307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgcgtctcccgtgttgGtgttgcccccgtggtaggcg	17	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139890307	T	T	139890307	3	4	84	1	0	0	0	0	1	0	0	0	3713	1261	44	3	4788	3	COL22A1	8	139890307	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	65216	139890307	6473715	944	87551											
BAI1	575	broad.mit.edu	37	chr8	143558885	143558885	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccctgagaagcaaaccaaGttctgcaacattgccctgtg	10	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143558885	C	C	143558885	3	2	84	1	0	0	0	0	1	0	0	0	1303	1020	36	4	1380	4	BAI1	8	143558885	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3668578	143558885	2805137	945	87552											
CYP11B1	1584	broad.mit.edu	37	chr8	143956492	143956492	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgatgtctagccagcGctgggggttatagcgctcag	14	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143956492	C	C	143956492	3	2	84	1	0	0	0	0	1	0	0	0	4178	1087	38	4	240	4	CYP11B1	8	143956492	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	397607	143956492	2407530	946	87553											
CYP11B2	1585	broad.mit.edu	37	chr8	143996211	143996211	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgggcatgaacatgaGctggacggtggatttgaaca	14	8	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143996211	C	C	143996211	3	2	84	1	0	0	0	0	1	0	0	0	4179	971	34	4	826	4	CYP11B2	8	143996211	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	39719	143996211	2367811	947	87554											
PLEC	5339	broad.mit.edu	37	chr8	144990835	144990835	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgcacctccaggaagcgcTggccggcctcgtagtagagc	13	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144990835	A	A	144990835	3	1	84	1	0	0	0	0	1	0	0	0	12147	1580	55	5	493	5	PLEC	8	144990835	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	994624	144990835	1373187	948	87555											
KANK1	23189	broad.mit.edu	37	chr9	712598	712598	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacacagaggagtctgtgaAcgacctcacactcctcaaga	8	13	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	712598	G	G	712598	3	3	84	1	0	0	0	0	1	0	0	0	8046	43	2	5	1838	5	KANK1	9	712598	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08		712598	140500833	949	87556											
RFX3	5991	broad.mit.edu	37	chr9	3248068	3248068	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggagtctctcctgttgcCtgagcaacacgatgttctac	9	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3248068	T	T	3248068	2	4	84	1	0	0	0	0	0	0	0	1	13372	680	24	4		4	RFX3	9	3248068	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2535470	3248068	137965363	950	87557											
FREM1	158326	broad.mit.edu	37	chr9	14748557	14748557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggtggatgaggaagaccCtgggggcagcagatgccaaa	17	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14748557	T	T	14748557	3	4	84	1	0	0	0	0	1	0	0	0	6104	681	24	4	929	4	FREM1	9	14748557	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	11500489	14748557	126464874	951	87558											
KIAA1797	54914	broad.mit.edu	37	chr9	20862828	20862828	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgttgttgttctgagaccAtgttgatatgtttatggact	11	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20862828	T	T	20862828	1	4	84	0	1	0	0	0	0	0	0	0	8328	232	8	5		5	KIAA1797	9	20862828	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	6114271	20862828	120350603	952	87559											
MTAP	4507	broad.mit.edu	37	chr9	21929595	21929595	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatgctggttatgtactAgctcttcctctaaaacacca	5	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21929595	T	T	21929595	1	4	84	0	1	0	0	0	0	0	0	0	10005	435	15	5		5	MTAP	9	21929595	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1066767	21929595	119283836	953	87560											
NUDT2	318	broad.mit.edu	37	chr9	34343307	34343307	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggactatgacgtggagAtccgcctctcccatgagcac	11	12	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34343307	T	T	34343307	3	4	84	1	0	0	0	0	1	0	0	0	10832	333	12	5	319	5	NUDT2	9	34343307	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	12413712	34343307	106870124	954	87561											
ARID3C	138715	broad.mit.edu	37	chr9	34621496	34621496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccctgtggagggtggggGtgcagggttggttggaccct	22	7	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34621496	T	T	34621496	3	4	84	1	0	0	0	0	1	0	0	0	920	1261	44	3	43	3	ARID3C	9	34621496	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	278189	34621496	106591935	955	87562											
VCP	7415	broad.mit.edu	37	chr9	35068147	35068147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggattcccagtaaacccCactctatctgcagtcactgc	7	14	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35068147	A	A	35068147	1	1	84	0	1	0	0	0	0	0	0	0	17267	609	21	2		2	VCP	9	35068147	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	446651	35068147	106145284	956	87563											
UNC13B	10497	broad.mit.edu	37	chr9	35403482	35403482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacagcgggtatgttccGgcctttcgtggaggtgacta	15	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35403482	T	T	35403482	3	4	84	1	0	0	0	0	1	0	0	0	17111	1116	39	1	4526	1	UNC13B	9	35403482	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	335335	35403482	105809949	957	87564											
TLN1	7094	broad.mit.edu	37	chr9	35724966	35724966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatagtgtcctgttagggCaggaagaagagacaggggcc	15	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35724966	A	A	35724966	1	1	84	0	1	0	0	0	0	0	0	0	16070	725	25	3		3	TLN1	9	35724966	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	321484	35724966	105488465	958	87565											
RECK	8434	broad.mit.edu	37	chr9	36087573	36087573	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttcagcaaaccaccatggCatgtgtatacctatgtaaca	8	10	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36087573	T	T	36087573	1	4	84	0	1	0	0	0	0	0	0	0	13308	725	25	4		4	RECK	9	36087573	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	362607	36087573	105125858	959	87566											
CLTA	1211	broad.mit.edu	37	chr9	36303814	36303814	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggggcggaattctgaacAgaacaggaagaatccagatg	13	7	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36303814	G	G	36303814	1	3	84	0	1	0	0	0	0	0	0	0	3596	203	7	5		5	CLTA	9	36303814	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	216241	36303814	104909617	960	87567											
FAM75A6	389730	broad.mit.edu	37	chr9	43628608	43628608	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcccagccctggtaggaagGatgcagggaaggggaagtgc	18	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43628608	A	A	43628608	1	1	84	0	1	0	0	0	0	0	0	0	5674	1189	41	4		4	FAM75A6	9	43628608	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7324794	43628608	97584823	961	87568											
FAM75A6	389730	broad.mit.edu	37	chr9	43629138	43629138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatggaatctgagaaggacCcggggttctgatttccttcc	12	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43629138	A	A	43629138	1	1	84	0	1	0	0	0	0	0	0	0	5674	638	22	2		2	FAM75A6	9	43629138	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	530	43629138	97584293	962	87569											
ALDH1A1	216	broad.mit.edu	37	chr9	75554984	75554984	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggcatgtcttttggagcTtgcaatggggttcaggagct	14	7	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75554984	A	A	75554984	1	1	84	0	1	0	0	0	0	0	0	0	490	1624	56	5		5	ALDH1A1	9	75554984	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	31925846	75554984	65658447	963	87570											
OSTF1	26578	broad.mit.edu	37	chr9	77732461	77732461	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtatacgtttgaacccAgaactgtaagtgttcagttt	8	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77732461	T	T	77732461	4	4	84	1	0	0	0	0	0	1	0	0	11391	180	7	5	82	5	OSTF1	9	77732461	Nonsense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2177477	77732461	63480970	964	87571											
GCNT1	2650	broad.mit.edu	37	chr9	79117275	79117275	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaagactgcccttcacaaagGaaatccctgattattgtttg	8	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79117275	C	C	79117275	1	2	84	0	1	0	0	0	0	0	0	0	6362	1189	41	4		4	GCNT1	9	79117275	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1384814	79117275	62096156	965	87572											
VPS13A	23230	broad.mit.edu	37	chr9	79954579	79954579	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcacataaagcctaatcagCaagacattagttttgtcagt	6	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79954579	G	G	79954579	3	3	84	1	0	0	0	0	1	0	0	0	17316	711	25	4	6716	4	VPS13A	9	79954579	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	837304	79954579	61258852	966	87573											
FRMD3	257019	broad.mit.edu	37	chr9	85924572	85924572	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacaaaacaagaaaaggcaCgtaaaataccatttacattt	4	7	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85924572	G	G	85924572	1	3	84	0	1	0	0	0	0	0	0	0	6110	551	19	4		4	FRMD3	9	85924572	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5969993	85924572	55288859	967	87574											
FRMD3	257019	broad.mit.edu	37	chr9	85987913	85987913	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagatcaggggtcaaattGctggaccatacaacgaatac	10	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85987913	A	A	85987913	1	1	84	0	1	0	0	0	0	0	0	0	6110	1334	46	4		4	FRMD3	9	85987913	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	63341	85987913	55225518	968	87575											
FGD3	89846	broad.mit.edu	37	chr9	95773416	95773416	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacagatcctctctctggaGgcagctgccctggagcccct	11	15	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95773416	C	C	95773416	1	2	84	0	1	0	0	0	0	0	0	0	5891	1015	35	4		4	FGD3	9	95773416	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	9785503	95773416	45440015	969	87576											
HSD17B3	3293	broad.mit.edu	37	chr9	99012156	99012156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaaagaaccatgaagtgGgcaaaagtgcatgtctgaac	11	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99012156	T	T	99012156	1	4	84	0	1	0	0	0	0	0	0	0	7452	1247	43	2		2	HSD17B3	9	99012156	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3238740	99012156	42201275	970	87577											
TGFBR1	7046	broad.mit.edu	37	chr9	101910089	101910089	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtatttctttttgatattAggcaattttctaaactgctt	6	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101910089	T	T	101910089	1	4	84	0	1	0	0	0	0	0	0	0	15944	435	15	5		5	TGFBR1	9	101910089	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2897933	101910089	39303342	971	87578											
ERP44	23071	broad.mit.edu	37	chr9	102814756	102814756	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attttcatttggaaattcttCcttaatgacatcggaagctt	6	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102814756	A	A	102814756	4	1	84	1	0	0	0	0	0	1	0	0	5285	864	30	3	1027	3	ERP44	9	102814756	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	904667	102814756	38398675	972	87579											
PPP3R2	5535	broad.mit.edu	37	chr9	104357274	104357274	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggtgagctcgggcgggGctcgtgcccggacggttggg	23	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104357274	T	T	104357274	1	4	84	0	1	0	0	0	0	0	0	0	12502	1218	42	3		3	PPP3R2	9	104357274	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1542518	104357274	36856157	973	87580											
ZNF462	58499	broad.mit.edu	37	chr9	109692895	109692895	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtggaagtgcacccaacGctccgagccatctgcaatca	10	13	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109692895	T	T	109692895	2	4	84	1	0	0	0	0	0	0	0	1	18053	1074	38	3		3	ZNF462	9	109692895	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5335621	109692895	31520536	974	87581											
ZNF462	58499	broad.mit.edu	37	chr9	109771835	109771835	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctttgcagagctgatgaGattttctgaccacggggctg	12	9	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109771835	T	T	109771835	3	4	84	1	0	0	0	0	1	0	0	0	18053	942	33	3	7241	3	ZNF462	9	109771835	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	78940	109771835	31441596	975	87582											
TNC	3371	broad.mit.edu	37	chr9	117800547	117800547	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaaaccttacctttctcGcctgtgtaggagatgacata	8	10	1	2	rs146574339		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117800547	T	T	117800547	2	4	84	1	0	0	0	0	0	0	0	1	16393	1074	38	3		3	TNC	9	117800547	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	8028712	117800547	23412884	976	87583											
PAPPA	5069	broad.mit.edu	37	chr9	118973876	118973876	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggttcttgcaccaagaagcAgagtacctagtttgcctgat	11	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118973876	T	T	118973876	1	4	84	0	1	0	0	0	0	0	0	0	11526	203	7	5		5	PAPPA	9	118973876	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1173329	118973876	22239555	977	87584											
ASTN2	23245	broad.mit.edu	37	chr9	119737578	119737578	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcggaaccacaaagcTtttgctgacaggaagccaga	11	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119737578	A	A	119737578	3	1	84	1	0	0	0	0	1	0	0	0	1069	1609	56	5	2509	5	ASTN2	9	119737578	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	763702	119737578	21475853	978	87585											
ASTN2	23245	broad.mit.edu	37	chr9	119976836	119976837	+	Missense_Mutation	DNP	CC	AA	AA													acggaattgtgggtttgcagCcgggatgaacggaagctctc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	119976837	AA	AA	119976836	3	1	84	1	0	0	0	0	1	0	0	0	1069	726	26	3	3362	3	ASTN2	9	119976836	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	239258	119976836	21236595	979	87586											
TLR4	7099	broad.mit.edu	37	chr9	120466790	120466790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgggactctgatcccaGccatggccttcctctcctgc	10	16	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120466790	T	T	120466790	3	4	84	1	0	0	0	0	1	0	0	0	16076	971	34	3	42	3	TLR4	9	120466790	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	489954	120466790	20746641	980	87587											
OR1L4	254973	broad.mit.edu	37	chr9	125487003	125487003	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctctacctgtggctcccaCctcactgtagtggtcctgtt	8	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125487003	G	G	125487003	3	3	84	1	0	0	0	0	1	0	0	0	11059	506	18	4	737	4	OR1L4	9	125487003	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5020213	125487003	15726428	981	87588											
NUP188	23511	broad.mit.edu	37	chr9	131760828	131760828	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctttcagctcctagttccAgcctcagtgaactgccttcg	7	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131760828	T	T	131760828	2	4	84	1	0	0	0	0	0	0	0	1	10853	175	7	5		5	NUP188	9	131760828	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	6273825	131760828	9452603	982	87589											
USP20	10868	broad.mit.edu	37	chr9	132637849	132637849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcccaggcatcccgccCcacaaataccactacatcga	4	18	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132637849	T	T	132637849	2	4	84	1	0	0	0	0	0	0	0	1	17178	610	22	4		4	USP20	9	132637849	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	877021	132637849	8575582	983	87590											
LAMC3	10319	broad.mit.edu	37	chr9	133943333	133943333	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcctttttccagcagtggCgtctgaatctgggctgaatg	13	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133943333	G	G	133943333	1	3	84	0	1	0	0	0	0	0	0	0	8688	783	27	4		4	LAMC3	9	133943333	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1305484	133943333	7270098	984	87591											
VAV2	7410	broad.mit.edu	37	chr9	136653575	136653575	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtagcccttccgcttgcaGacgatgaccaccttgtcaaa	8	14	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136653575	A	A	136653575	2	1	84	1	0	0	0	0	0	0	0	1	17259	929	33	4		4	VAV2	9	136653575	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2710242	136653575	4559856	985	87592											
KCNT1	57582	broad.mit.edu	37	chr9	138650232	138650232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggtccacagtccctgcCcgctgacagccaccactcct	10	19	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138650232	A	A	138650232	1	1	84	0	1	0	0	0	0	0	0	0	8161	638	22	2		2	KCNT1	9	138650232	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1996657	138650232	2563199	986	87593											
COBRA1	25920	broad.mit.edu	37	chr9	140150783	140150783	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtgagttgttccaggtAcaagaagctggaagaccttc	11	9	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140150783	G	G	140150783	3	3	84	1	0	0	0	0	1	0	0	0	3687	391	14	5	279	5	COBRA1	9	140150783	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1500551	140150783	1062648	987	87594											
DIP2C	22982	broad.mit.edu	37	chr10	387246	387246	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcttaatggaacggcagaaGgcactggtggctgcgtgaga	16	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	387246	C	C	387246	2	2	84	1	0	0	0	0	0	0	0	1	4569	987	35	4		4	DIP2C	10	387246	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08		387246	135147501	988	87595											
SFMBT2	57713	broad.mit.edu	37	chr10	7218240	7218240	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccaatgacaaagcatatCgcgtgcagtttcccatgttg	8	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7218240	A	A	7218240	1	1	84	0	1	0	0	0	0	0	0	0	14271	899	31	3		3	SFMBT2	10	7218240	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6830994	7218240	128316507	989	87596											
ITIH5	80760	broad.mit.edu	37	chr10	7611657	7611657	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtgatcagagaccagcCtgaggatgtccccgggctgc	13	14	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7611657	T	T	7611657	3	4	84	1	0	0	0	0	1	0	0	0	7977	681	24	4	759	4	ITIH5	10	7611657	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	393417	7611657	127923090	990	87597											
ACBD7	414149	broad.mit.edu	37	chr10	15057491	15057491	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggaaaataatatgtacGggcaaattatttgaactgta	8	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15057491	C	C	15057491	1	2	84	0	1	0	0	0	0	0	0	0	127	1131	39	4		4	ACBD7	10	15057491	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7445834	15057491	120477256	991	87598											
ITGA8	8516	broad.mit.edu	37	chr10	15614333	15614333	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcccacctccaggatGgtgtcactgatggtacttgg	13	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15614333	A	A	15614333	2	1	84	1	0	0	0	0	0	0	0	1	7952	1335	47	4		4	ITGA8	10	15614333	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	556842	15614333	119920414	992	87599											
CUBN	8029	broad.mit.edu	37	chr10	17113474	17113474	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacttccaatttcaaagacaGtgaagttgaggagaatgact	9	6	1	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17113474	C	C	17113474	3	2	84	1	0	0	0	0	1	0	0	0	4084	1029	36	4	8491	4	CUBN	10	17113474	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1499141	17113474	118421273	993	87600											
STAM	8027	broad.mit.edu	37	chr10	17730268	17730268	+	Intron	DEL	A	-	-													ttcattcccaggtaatttttActacttcagaggaattttcg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17730268	-	-	17730268	6	5	84	0	1	1	0	1	0	0	0	0	15366	406	14	0		0	STAM	10	17730268	Intron	DEL	A	TCGA-17-Z055-01A-01W-0747-08	616794	17730268	117804479	994	87601											
SLC39A12	221074	broad.mit.edu	37	chr10	18270103	18270103	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtacagctgaaagtttgcagGgaaacacgtgtcgtaccggc	13	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18270103	C	C	18270103	1	2	84	0	1	0	0	0	0	0	0	0	14729	1247	43	4		4	SLC39A12	10	18270103	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	539835	18270103	117264644	995	87602											
NEBL	10529	broad.mit.edu	37	chr10	21124440	21124440	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatcacgcaccctactaAcctcactcgctatctctgca	4	18	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21124440	C	C	21124440	5	2	84	1	0	0	0	0	0	0	1	0	10398	57	2	5	1653	5	NEBL	10	21124440	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2854337	21124440	114410307	996	87603											
KIAA1217	56243	broad.mit.edu	37	chr10	24820937	24820937	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaaggtctgataggctaaGccctggtaaactggcctctg	12	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24820937	A	A	24820937	1	1	84	0	1	0	0	0	0	0	0	0	8286	986	34	4		4	KIAA1217	10	24820937	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3696497	24820937	110713810	997	87604											
GAD2	2572	broad.mit.edu	37	chr10	26508113	26508113	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatcctaatgagcttctccAagaatataattgggaattgg	8	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26508113	T	T	26508113	3	4	84	1	0	0	0	0	1	0	0	0	6240	130	5	5	442	5	GAD2	10	26508113	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1687176	26508113	109026634	998	87605											
ZEB1	6935	broad.mit.edu	37	chr10	31784670	31784670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcgtttgtattaggaacaCtatagatctattttaatttc	5	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31784670	A	A	31784670	1	1	84	0	1	0	0	0	0	0	0	0	17749	580	20	3		3	ZEB1	10	31784670	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5276557	31784670	103750077	999	87606											
ANKRD30A	91074	broad.mit.edu	37	chr10	37508121	37508121	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaatcattaactaaaaggGcatctcaatatagtgggcag	10	6	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37508121	A	A	37508121	3	1	84	1	0	0	0	0	1	0	0	0	658	1203	42	4	3447	4	ANKRD30A	10	37508121	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5723451	37508121	98026626	1000	87607											
C10orf10	11067	broad.mit.edu	37	chr10	45473262	45473262	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagggcggcccttccggcAggcctgggctggcctgtggg	19	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45473262	C	C	45473262	3	2	84	1	0	0	0	0	1	0	0	0	1590	188	7	5	425	5	C10orf10	10	45473262	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	7965141	45473262	90061485	1001	87608											
PPYR1	5540	broad.mit.edu	37	chr10	47087408	47087408	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgagtcctggccactggctCaccaccgcaccatctacacc	7	20	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47087408	A	A	47087408	3	1	84	1	0	0	0	0	1	0	0	0	12517	826	29	3	627	3	PPYR1	10	47087408	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1614146	47087408	88447339	1002	87609											
ARHGAP22	58504	broad.mit.edu	37	chr10	49667674	49667674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtcctgggcaggagccCctgcaggaggaatggacaaa	16	9	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49667674	A	A	49667674	1	1	84	0	1	0	0	0	0	0	0	0	874	638	22	2		2	ARHGAP22	10	49667674	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2580266	49667674	85867073	1003	87610											
UBE2D1	7321	broad.mit.edu	37	chr10	60128535	60128535	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcaatgtaaaaatcaaaaAcattttcatatataccagag	4	6	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60128535	T	T	60128535	1	4	84	0	1	0	0	0	0	0	0	0	16974	58	2	5		5	UBE2D1	10	60128535	3'UTR	SNP	A	TCGA-17-Z055-01A-01W-0747-08	10460861	60128535	75406212	1004	87611											
JMJD1C	221037	broad.mit.edu	37	chr10	64952903	64952903	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactgtgattaagaacattCtgtaaaacctacaaaggtag	7	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64952903	A	A	64952903	3	1	84	1	0	0	0	0	1	0	0	0	8020	912	32	3	1795	3	JMJD1C	10	64952903	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4824368	64952903	70581844	1005	87612											
TET1	80312	broad.mit.edu	37	chr10	70451365	70451365	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactaaacaagattaagtttGaggctaaagaagctaagaat	8	4	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70451365	T	T	70451365	4	4	84	1	0	0	0	0	0	1	0	0	15891	1291	45	3	6247	3	TET1	10	70451365	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5498462	70451365	65083382	1006	87613											
DDX50	79009	broad.mit.edu	37	chr10	70670245	70670245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggctcactgcaacctccGcctcctgggttcaagcgatt	9	15	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70670245	T	T	70670245	1	4	84	0	1	0	0	0	0	0	0	0	4401	1102	38	3		3	DDX50	10	70670245	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	218880	70670245	64864502	1007	87614											
COL13A1	1305	broad.mit.edu	37	chr10	71655252	71655252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggggtgccctgagaaaCaggtacccccaacaagtgcc	13	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71655252	T	T	71655252	1	4	84	0	1	0	0	0	0	0	0	0	3702	493	17	4		4	COL13A1	10	71655252	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	985007	71655252	63879495	1008	87615											
ADAMTS14	140766	broad.mit.edu	37	chr10	72503391	72503391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcacgatgggacacgctGcagctaccgggacccataca	12	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72503391	T	T	72503391	3	4	84	1	0	0	0	0	1	0	0	0	259	1319	46	3	2071	3	ADAMTS14	10	72503391	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	848139	72503391	63031356	1009	87616											
CDH23	64072	broad.mit.edu	37	chr10	73544081	73544081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggagggggtgctaagGgtccggaaggacgtggagct	20	7	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73544081	T	T	73544081	3	4	84	1	0	0	0	0	1	0	0	0	3138	1223	43	2	5913	2	CDH23	10	73544081	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1040690	73544081	61990666	1010	87617											
CDH23	64072	broad.mit.edu	37	chr10	73550110	73550110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccaagacatctacgccGtggtgacctaccagctgctg	10	14	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73550110	T	T	73550110	3	4	84	1	0	0	0	0	1	0	0	0	3138	1145	40	3	6512	3	CDH23	10	73550110	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6029	73550110	61984637	1011	87618											
TTC18	118491	broad.mit.edu	37	chr10	75113264	75113264	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttttcccatccaacatgaTagggaagaaggcaatcggga	11	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75113264	C	C	75113264	1	2	84	0	1	0	0	0	0	0	0	0	16811	1421	49	5		5	TTC18	10	75113264	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1563154	75113264	60421483	1012	87619											
KIAA0913	23053	broad.mit.edu	37	chr10	75556676	75556676	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccccaggggccctgcaaCcactgacctcaggctctgca	10	18	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75556676	T	T	75556676	3	4	84	1	0	0	0	0	1	0	0	0	8270	507	18	4	3240	4	KIAA0913	10	75556676	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	443412	75556676	59978071	1013	87620											
DLG5	9231	broad.mit.edu	37	chr10	79581697	79581697	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcttccagcctgtccgTgtagaagatgtctgtctgcg	11	12	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79581697	G	G	79581697	3	3	84	1	0	0	0	0	1	0	0	0	4598	1696	59	5	3286	5	DLG5	10	79581697	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	4025021	79581697	55953050	1014	87621											
SFTPD	6441	broad.mit.edu	37	chr10	81697913	81697913	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacagcagctgtgcctccgTaaatggttttacaaagcctg	10	11	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81697913	C	C	81697913	3	2	84	1	0	0	0	0	1	0	0	0	14306	1638	57	5	308	5	SFTPD	10	81697913	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2116216	81697913	53836834	1015	87622											
GHITM	27069	broad.mit.edu	37	chr10	85912133	85912133	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttctggcttctctgctaCatcaaatatcttgtttaatg	6	9	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85912133	T	T	85912133	1	4	84	0	1	0	0	0	0	0	0	0	6434	493	17	4		4	GHITM	10	85912133	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4214220	85912133	49622614	1016	87623											
CDHR1	92211	broad.mit.edu	37	chr10	85972974	85972975	+	Nonsense_Mutation	DNP	CC	AA	AA													gctcaagaattccatccgctCcctggatgccctgcacaaca							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	85972975	AA	AA	85972974	4	1	84	1	0	0	0	0	0	1	0	0	3148	855	30	3	1972	3	CDHR1	10	85972974	Nonsense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	60841	85972974	49561773	1017	87624											
LRIT2	340745	broad.mit.edu	37	chr10	85984516	85984516	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattggaggataggtcaagGtaggtcaggctgaccaagaa	14	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85984516	T	T	85984516	4	4	84	1	0	0	0	0	0	1	0	0	9035	1256	44	3	1195	3	LRIT2	10	85984516	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	11542	85984516	49550231	1018	87625											
PAPSS2	9060	broad.mit.edu	37	chr10	89475487	89475487	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactactttttgtgttttgcAgctggatctccagtgggtcc	10	9	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89475487	T	T	89475487	5	4	84	1	0	0	0	0	0	0	1	0	11529	202	7	5	778	5	PAPSS2	10	89475487	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3490971	89475487	46059260	1019	87626											
CH25H	9023	broad.mit.edu	37	chr10	90966765	90966765	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acggggaacacaaacatcacAtgctggtagagggtctgccc	12	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90966765	T	T	90966765	3	4	84	1	0	0	0	0	1	0	0	0	3337	214	8	5	537	5	CH25H	10	90966765	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1491278	90966765	44567982	1020	87627											
PCGF5	84333	broad.mit.edu	37	chr10	93008124	93008124	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataagtgtgttccatggacAgaagagtatggtatagtaga	12	3	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93008124	G	G	93008124	1	3	84	0	1	0	0	0	0	0	0	0	11671	203	7	5		5	PCGF5	10	93008124	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2041359	93008124	42526623	1021	87628											
HECTD2	143279	broad.mit.edu	37	chr10	93258614	93258614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatattaatatgtgtaatGgcatctcccatcaggttttt	6	8	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93258614	T	T	93258614	1	4	84	0	1	0	0	0	0	0	0	0	7107	1363	47	2		2	HECTD2	10	93258614	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	250490	93258614	42276133	1022	87629											
HECTD2	143279	broad.mit.edu	37	chr10	93260936	93260936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgatgttaatttcctttGgtattctctagatacttttg	6	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93260936	T	T	93260936	1	4	84	0	1	0	0	0	0	0	0	0	7107	1363	47	2		2	HECTD2	10	93260936	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2322	93260936	42273811	1023	87630											
IDE	3416	broad.mit.edu	37	chr10	94229922	94229922	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgtgttccttatcacaCcatgctggttaacaatcttg	6	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94229922	T	T	94229922	1	4	84	0	1	0	0	0	0	0	0	0	7563	522	18	4		4	IDE	10	94229922	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	968986	94229922	41304825	1024	87631											
CYP2C19	1557	broad.mit.edu	37	chr10	96535209	96535209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctccctcatgacgctgCggaattttgggatggggaag	14	8	2	1	rs149590953		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96535209	A	A	96535209	2	1	84	1	0	0	0	0	0	0	0	1	4199	759	27	3		3	CYP2C19	10	96535209	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2305287	96535209	38999538	1025	87632											
SLIT1	6585	broad.mit.edu	37	chr10	98924687	98924687	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaagcagtggggtgagcaGggtaagcccccaggccaggg	19	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98924687	C	C	98924687	1	2	84	0	1	0	0	0	0	0	0	0	14853	1015	35	4		4	SLIT1	10	98924687	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2389478	98924687	36610060	1026	87633											
PYROXD2	84795	broad.mit.edu	37	chr10	100157240	100157240	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagcgatgcatgaactcctCatatttgggaaagacctgga	10	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100157240	A	A	100157240	4	1	84	1	0	0	0	0	0	1	0	0	12975	835	29	3	1302	3	PYROXD2	10	100157240	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1232553	100157240	35377507	1027	87634											
ELOVL3	83401	broad.mit.edu	37	chr10	103986431	103986431	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactttgggagagggaaaggCcatgccagggccccggggcc	18	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103986431	T	T	103986431	1	4	84	0	1	0	0	0	0	0	0	0	5117	754	26	4		4	ELOVL3	10	103986431	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3829191	103986431	31548316	1028	87635											
PSD	5662	broad.mit.edu	37	chr10	104176415	104176416	+	Missense_Mutation	DNP	CC	AA	AA													ggagaaaccccacccagatcCcagctccgactcaagccccc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	104176416	AA	AA	104176415	3	1	84	1	0	0	0	0	1	0	0	0	12752	624	22	2	2757	2	PSD	10	104176415	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	189984	104176415	31358332	1029	87636											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105495414	105495414	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacctttcctcacagatggAcactcaggcaaatgggcccc	8	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105495414	G	G	105495414	1	3	84	0	1	0	0	0	0	0	0	0	14369	290	10	5		5	SH3PXD2A	10	105495414	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1318999	105495414	30039333	1030	87637											
SORCS3	22986	broad.mit.edu	37	chr10	106581864	106581864	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtctgaccagctcctctgtGattcttatttctctagatca	6	11	5	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106581864	T	T	106581864	1	4	84	0	1	0	0	0	0	0	0	0	15046	1305	45	3		3	SORCS3	10	106581864	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1086450	106581864	28952883	1031	87638											
SORCS3	22986	broad.mit.edu	37	chr10	106916950	106916950	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaggtggacgaccaggtgAagacatacatcacttacaac	10	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106916950	T	T	106916950	4	4	84	1	0	0	0	0	0	1	0	0	15046	247	9	5	1575	5	SORCS3	10	106916950	Nonsense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	335086	106916950	28617797	1032	87639											
NRAP	4892	broad.mit.edu	37	chr10	115413942	115413942	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagactcccagcaacactTacatacattgtcaaaagaag	5	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115413942	A	A	115413942	1	1	84	0	1	0	0	0	0	0	0	0	10733	1769	61	5		5	NRAP	10	115413942	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	8496992	115413942	20120805	1033	87640											
ATRNL1	26033	broad.mit.edu	37	chr10	117024724	117024724	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttcatagagatgtcaacaGatttggacactctgcagtag	9	8	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117024724	T	T	117024724	3	4	84	1	0	0	0	0	1	0	0	0	1211	942	33	3	1784	3	ATRNL1	10	117024724	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1610782	117024724	18510023	1034	87641											
ATRNL1	26033	broad.mit.edu	37	chr10	117278892	117278892	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtattctgatatatgtcCtgtcaatctgttagataatc	6	8	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117278892	T	T	117278892	1	4	84	0	1	0	0	0	0	0	0	0	1211	696	24	4		4	ATRNL1	10	117278892	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	254168	117278892	18255855	1035	87642											
GFRA1	2674	broad.mit.edu	37	chr10	117824122	117824122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccacagtatactttacaCtctctctccccccgactccc	2	20	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117824122	A	A	117824122	1	1	84	0	1	0	0	0	0	0	0	0	6411	580	20	3		3	GFRA1	10	117824122	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	545230	117824122	17710625	1036	87643											
GFRA1	2674	broad.mit.edu	37	chr10	117853300	117853300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagtcacaccatggggCcacactgaggctactggagt	13	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117853300	A	A	117853300	3	1	84	1	0	0	0	0	1	0	0	0	6411	739	26	3	485	3	GFRA1	10	117853300	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	29178	117853300	17681447	1037	87644											
GFRA1	2674	broad.mit.edu	37	chr10	117885056	117885056	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcagttgttccctttgGgaatgtgctccactgcaaat	10	11	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117885056	A	A	117885056	3	1	84	1	0	0	0	0	1	0	0	0	6411	1232	43	4	975	4	GFRA1	10	117885056	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	31756	117885056	17649691	1038	87645											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118404587	118404587	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgtggaagaaaacgtcttGcaatctctttacccttgtta	7	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118404587	C	C	118404587	3	2	84	1	0	0	0	0	1	0	0	0	12246	1310	46	4	1441	4	PNLIPRP2	10	118404587	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	519531	118404587	17130160	1039	87646											
TACC2	10579	broad.mit.edu	37	chr10	124013452	124013452	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaagccccatgagcatTctgactggccagatttcaaa	7	12	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124013452	G	G	124013452	1	3	84	0	1	0	0	0	0	0	0	0	15621	1798	62	5		5	TACC2	10	124013452	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5608865	124013452	11521295	1040	87647											
DMBT1	1755	broad.mit.edu	37	chr10	124391555	124391555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccaccaggatagtgtgcCcctctctgtgcttcagtggc	12	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124391555	A	A	124391555	1	1	84	0	1	0	0	0	0	0	0	0	4617	638	22	2		2	DMBT1	10	124391555	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	378103	124391555	11143192	1041	87648											
FAM53B	9679	broad.mit.edu	37	chr10	126395314	126395314	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggcgctgggctccatcccAgggtgggtatcagccatctt	13	13	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126395314	G	G	126395314	1	3	84	0	1	0	0	0	0	0	0	0	5631	203	7	5		5	FAM53B	10	126395314	5'UTR	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2003759	126395314	9139433	1042	87649											
CTBP2	1488	broad.mit.edu	37	chr10	126714570	126714570	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgagtgaggacttgccatCctatgttcaaacttctacaa	9	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126714570	A	A	126714570	1	1	84	0	1	0	0	0	0	0	0	0	4032	870	30	3		3	CTBP2	10	126714570	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	319256	126714570	8820177	1043	87650											
UROS	7390	broad.mit.edu	37	chr10	127504742	127504742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctcagtcacaacaggccTtaccttctcagagaaactgg	9	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127504742	A	A	127504742	1	1	84	0	1	0	0	0	0	0	0	0	17156	1624	56	5		5	UROS	10	127504742	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	790172	127504742	8030005	1044	87651											
VENTX	27287	broad.mit.edu	37	chr10	135053168	135053168	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgagccaaatgcccttacCctctatgtcagggttgagta	10	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135053168	G	G	135053168	1	3	84	0	1	0	0	0	0	0	0	0	17280	638	22	4		4	VENTX	10	135053168	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	7548426	135053168	481579	1045	87652											
PRAP1	118471	broad.mit.edu	37	chr10	135165551	135165551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagcctccggagaaggacGaccagctggtggtgctgttc	16	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135165551	T	T	135165551	3	4	84	1	0	0	0	0	1	0	0	0	12547	1058	37	3	183	3	PRAP1	10	135165551	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	112383	135165551	369196	1046	87653											
NUP98	4928	broad.mit.edu	37	chr11	3720235	3720235	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaagccaaagggaaatgcaCaattagcggggagcggtagg	16	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3720235	T	T	3720235	1	4	84	0	1	0	0	0	0	0	0	0	10868	493	17	4		4	NUP98	11	3720235	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08		3720235	131286281	1047	87654											
NUP98	4928	broad.mit.edu	37	chr11	3793135	3793135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggcccttcctgttagcCtgataatcctctaaacgaag	9	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3793135	A	A	3793135	3	1	84	1	0	0	0	0	1	0	0	0	10868	680	24	2	4955	2	NUP98	11	3793135	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	72900	3793135	131213381	1048	87655											
C11orf40	143501	broad.mit.edu	37	chr11	4598906	4598906	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagctgcatagccggcTcacccttggcttcagggtca	11	15	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4598906	A	A	4598906	1	1	84	0	1	0	0	0	0	0	0	0	1651	1566	54	5		5	C11orf40	11	4598906	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	805771	4598906	130407610	1049	87656											
OR51S1	119692	broad.mit.edu	37	chr11	4870505	4870505	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggtttacttaatcgcgtgCcaaatttgcatgaaacgttc	8	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4870505	G	G	4870505	1	3	84	0	1	0	0	0	0	0	0	0	11199	754	26	4		4	OR51S1	11	4870505	5'Flank	SNP	C	TCGA-17-Z055-01A-01W-0747-08	271599	4870505	130136011	1050	87657											
OR51G2	81282	broad.mit.edu	37	chr11	4936138	4936138	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgtagaagagcagcacAgcacagatgtgggaaacaca	14	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4936138	G	G	4936138	2	3	84	1	0	0	0	0	0	0	0	1	11193	175	7	5		5	OR51G2	11	4936138	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	65633	4936138	130070378	1051	87658											
OR51G1	79324	broad.mit.edu	37	chr11	4944709	4944709	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatgatggggttcataagGggtggtaccagcagatacac	14	6	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4944709	T	T	4944709	2	4	84	1	0	0	0	0	0	0	0	1	11192	1219	43	2		2	OR51G1	11	4944709	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	8571	4944709	130061807	1052	87659											
OR51B6	390058	broad.mit.edu	37	chr11	5373149	5373149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctatcctgaccaacaccCaggtaatgaagattggtgtg	9	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5373149	A	A	5373149	3	1	84	1	0	0	0	0	1	0	0	0	11186	595	21	2	414	2	OR51B6	11	5373149	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	428440	5373149	129633367	1053	87660											
OR52N4	390072	broad.mit.edu	37	chr11	5776868	5776868	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctatggggtgaaaaccAaacagatacgagactgtgtc	11	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5776868	G	G	5776868	3	3	84	1	0	0	0	0	1	0	0	0	11223	131	5	5	900	5	OR52N4	11	5776868	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	403719	5776868	129229648	1054	87661											
OR52E4	390081	broad.mit.edu	37	chr11	5906066	5906066	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgtacctcacacatactgtGagcacaggggtctggccggg	13	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5906066	T	T	5906066	4	4	84	1	0	0	0	0	0	1	0	0	11210	1291	45	3	546	3	OR52E4	11	5906066	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	129198	5906066	129100450	1055	87662											
OR56A3	390083	broad.mit.edu	37	chr11	5969236	5969236	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacctcatccttatcttcctCtcctacaccttcattctgcg	3	17	5	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5969236	G	G	5969236	2	3	84	1	0	0	0	0	0	0	0	1	11228	900	32	4		4	OR56A3	11	5969236	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	63170	5969236	129037280	1056	87663											
OR52L1	338751	broad.mit.edu	37	chr11	6007543	6007543	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgactgtggtttctgagcaGgcaagtttcacaacagccat	10	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6007543	T	T	6007543	2	4	84	1	0	0	0	0	0	0	0	1	11219	987	35	2		2	OR52L1	11	6007543	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	38307	6007543	128998973	1057	87664											
OR56A1	120796	broad.mit.edu	37	chr11	6048534	6048534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtaccgcagtgggtggCagatggccacataacggtca	15	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6048534	A	A	6048534	3	1	84	1	0	0	0	0	1	0	0	0	11227	710	25	3	559	3	OR56A1	11	6048534	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	40991	6048534	128957982	1058	87665											
HPX	3263	broad.mit.edu	37	chr11	6458639	6458639	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggaaagtggatgaattcTgacaggtctcaagtgctagg	14	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6458639	A	A	6458639	1	1	84	0	1	0	0	0	0	0	0	0	7413	1595	55	5		5	HPX	11	6458639	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	410105	6458639	128547877	1059	87666											
ARFIP2	23647	broad.mit.edu	37	chr11	6500084	6500084	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccagctgcaggacactctCatacttgcgcttcgtctcac	8	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6500084	A	A	6500084	4	1	84	1	0	0	0	0	0	1	0	0	857	835	29	3	620	3	ARFIP2	11	6500084	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	41445	6500084	128506432	1060	87667											
OR10A5	144124	broad.mit.edu	37	chr11	6867266	6867266	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgcttcctcctggctaCcatggcatatgaccgctatg	9	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6867266	T	T	6867266	3	4	84	1	0	0	0	0	1	0	0	0	10987	507	18	4	355	4	OR10A5	11	6867266	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	367182	6867266	128139250	1061	87668											
OR10A2	341276	broad.mit.edu	37	chr11	6891362	6891362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtcatcatgaaccaaaGgactcgtgccaaactggctg	9	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6891362	T	T	6891362	3	4	84	1	0	0	0	0	1	0	0	0	10984	1000	35	2	379	2	OR10A2	11	6891362	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	24096	6891362	128115154	1062	87669											
NLRP14	338323	broad.mit.edu	37	chr11	7060058	7060058	+	Frame_Shift_Del	DEL	A	-	-													tgtctctcaaaatctttggcAagatgaacctgaaggatctg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7060058	-	-	7060058	7	5	84	1	0	1	0	1	0	0	0	0	10571	131	5	0	243	0	NLRP14	11	7060058	Frame_Shift_Del	DEL	A	TCGA-17-Z055-01A-01W-0747-08	168696	7060058	127946458	1063	87670											
NLRP14	338323	broad.mit.edu	37	chr11	7079645	7079645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaagcttatgagtgatgCcctgcaacatgcacaatgta	9	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7079645	A	A	7079645	3	1	84	1	0	0	0	0	1	0	0	0	10571	739	26	3	2623	3	NLRP14	11	7079645	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	19587	7079645	127926871	1064	87671											
OR10A6	390093	broad.mit.edu	37	chr11	7949838	7949838	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagaggatggcaaattgcAgcaaatcggtcataagccat	11	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7949838	T	T	7949838	2	4	84	1	0	0	0	0	0	0	0	1	10988	175	7	5		5	OR10A6	11	7949838	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	870193	7949838	127056678	1065	87672											
TUB	7275	broad.mit.edu	37	chr11	8122297	8122297	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaaatccaaggacccccattCccgggatagatccctttctg	8	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8122297	G	G	8122297	1	3	84	0	1	0	0	0	0	0	0	0	16868	870	30	4		4	TUB	11	8122297	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	172459	8122297	126884219	1066	87673											
SCUBE2	57758	broad.mit.edu	37	chr11	9055142	9055142	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatgacatcagagatgggAggagtaggaaggaacagaca	14	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9055142	G	G	9055142	1	3	84	0	1	0	0	0	0	0	0	0	14058	319	11	5		5	SCUBE2	11	9055142	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	932845	9055142	125951374	1067	87674											
WEE1	7465	broad.mit.edu	37	chr11	9610100	9610100	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagagtaatagaacatctcGacttattggaaagaaaatga	8	6	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9610100	T	T	9610100	3	4	84	1	0	0	0	0	1	0	0	0	17471	1058	37	3	1934	3	WEE1	11	9610100	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	554958	9610100	125396416	1068	87675											
SBF2	81846	broad.mit.edu	37	chr11	9871503	9871503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatctgcaaatcactgtgCacagatgggatcgagacctc	10	10	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9871503	A	A	9871503	1	1	84	0	1	0	0	0	0	0	0	0	13971	725	25	3		3	SBF2	11	9871503	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	261403	9871503	125135013	1069	87676											
USP47	55031	broad.mit.edu	37	chr11	11942041	11942041	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttattgatgttgaagatgaGgtaaatatttgttattttaa	8	0	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11942041	C	C	11942041	3	2	84	1	0	0	0	0	1	0	0	0	17205	1014	35	4	1048	4	USP47	11	11942041	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2070538	11942041	123064475	1070	87677											
CALCA	796	broad.mit.edu	37	chr11	14992724	14992724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccaggaagggggagaaCttttggaagcccatgacacc	14	9	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14992724	A	A	14992724	3	1	84	1	0	0	0	0	1	0	0	0	2601	564	20	3	586	3	CALCA	11	14992724	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3050683	14992724	120013792	1071	87678											
CALCB	797	broad.mit.edu	37	chr11	15096627	15096627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgccctggagagcagccCagacccggccacactcagta	11	16	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15096627	A	A	15096627	3	1	84	1	0	0	0	0	1	0	0	0	2602	594	21	2	113	2	CALCB	11	15096627	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	103903	15096627	119909889	1072	87679											
PIK3C2A	5286	broad.mit.edu	37	chr11	17111270	17111270	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgttcatgcttccaaagctCaaacattcactagtttacaa	4	11	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17111270	T	T	17111270	1	4	84	0	1	0	0	0	0	0	0	0	12004	841	29	4		4	PIK3C2A	11	17111270	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2014643	17111270	117895246	1073	87680											
ABCC8	6833	broad.mit.edu	37	chr11	17448537	17448537	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtgtgtgcatcctcaactGaggaggatggttaaaaggag	14	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17448537	T	T	17448537	1	4	84	0	1	0	0	0	0	0	0	0	58	1305	45	3		3	ABCC8	11	17448537	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	337267	17448537	117557979	1074	87681											
ABCC8	6833	broad.mit.edu	37	chr11	17450162	17450162	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtgggctcatggggggCacactgctcctcacggatct	15	11	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17450162	G	G	17450162	3	3	84	1	0	0	0	0	1	0	0	0	58	710	25	4	2980	4	ABCC8	11	17450162	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1625	17450162	117556354	1075	87682											
MRGPRX4	117196	broad.mit.edu	37	chr11	18195302	18195303	+	Missense_Mutation	DNP	GG	TT	TT													tctgtgacttcctgtttagtGgtgctgattctagttggtgt							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	18195303	TT	TT	18195302	3	4	84	1	0	0	0	0	1	0	0	0	9863	1348	47	2	501	2	MRGPRX4	11	18195302	Missense_Mutation	DNP	GG	TCGA-17-Z055-01A-01W-0747-08	745140	18195302	116811214	1076	87683											
SAA4	6291	broad.mit.edu	37	chr11	18257353	18257353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctcagaatgaatcctgggTatgtgccctccatcctccag	9	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18257353	A	A	18257353	1	1	84	0	1	0	0	0	0	0	0	0	13911	1653	57	5		5	SAA4	11	18257353	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	62051	18257353	116749163	1077	87684											
PRMT3	10196	broad.mit.edu	37	chr11	20473749	20473749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatacttggcaaaaggagGctcgggtgagtataaaattc	11	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20473749	T	T	20473749	3	4	84	1	0	0	0	0	1	0	0	0	12644	1203	42	3	1109	3	PRMT3	11	20473749	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2216396	20473749	114532767	1078	87685											
SLC6A5	9152	broad.mit.edu	37	chr11	20648268	20648268	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctaggtggtgtacttcacGgccacgttcccgtatgtcgt	11	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20648268	A	A	20648268	2	1	84	1	0	0	0	0	0	0	0	1	14801	1103	39	4		4	SLC6A5	11	20648268	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	174519	20648268	114358248	1079	87686											
NELL1	4745	broad.mit.edu	37	chr11	20869131	20869131	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcctttacatacagctAttttgaactggagagcagtg	9	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20869131	G	G	20869131	3	3	84	1	0	0	0	0	1	0	0	0	10428	449	16	5	352	5	NELL1	11	20869131	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	220863	20869131	114137385	1080	87687											
NELL1	4745	broad.mit.edu	37	chr11	21594652	21594652	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgatgagaattactgtgctCtctttccccttctatgactt	7	10	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21594652	G	G	21594652	1	3	84	0	1	0	0	0	0	0	0	0	10428	928	32	4		4	NELL1	11	21594652	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	725521	21594652	113411864	1081	87688											
SLC17A6	57084	broad.mit.edu	37	chr11	22363248	22363248	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctgcatctccttcggtatCcgctgcaacctgggcgtggc	11	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22363248	G	G	22363248	3	3	84	1	0	0	0	0	1	0	0	0	14534	845	30	4	267	4	SLC17A6	11	22363248	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	768596	22363248	112643268	1082	87689											
LUZP2	338645	broad.mit.edu	37	chr11	25098994	25098994	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgtcaaaaagcatttaTtggatccattgtatttattt	6	4	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25098994	A	A	25098994	1	1	84	0	1	0	0	0	0	0	0	0	9174	1508	52	5		5	LUZP2	11	25098994	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2735746	25098994	109907522	1083	87690											
ANO3	63982	broad.mit.edu	37	chr11	26655757	26655757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttccttttagaatatcCtcgaacagaatcagagtggg	10	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26655757	A	A	26655757	3	1	84	1	0	0	0	0	1	0	0	0	698	681	24	2	1954	2	ANO3	11	26655757	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1556763	26655757	108350759	1084	87691											
FIBIN	387758	broad.mit.edu	37	chr11	27016683	27016683	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggacccgactaggtcggCtgaaaaatgattatcttaaa	10	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016683	T	T	27016683	2	4	84	1	0	0	0	0	0	0	0	1	5942	796	28	4		4	FIBIN	11	27016683	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	360926	27016683	107989833	1085	87692											
PAX6	5080	broad.mit.edu	37	chr11	31812340	31812340	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggtgtaggtatcataactCcgcccattcaccgaagggct	12	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31812340	A	A	31812340	2	1	84	1	0	0	0	0	0	0	0	1	11577	842	30	3		3	PAX6	11	31812340	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4795657	31812340	103194176	1086	87693											
WT1	7490	broad.mit.edu	37	chr11	32414252	32414252	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttgagctggtctgaacgAgaaaaccttcgttcacagtc	9	10	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32414252	G	G	32414252	2	3	84	1	0	0	0	0	0	0	0	1	17535	291	11	5		5	WT1	11	32414252	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	601912	32414252	102592264	1087	87694											
C11orf41	25758	broad.mit.edu	37	chr11	33581349	33581349	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttggtgtacgtcgtgggcAatcagagcacattcctcaac	10	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33581349	T	T	33581349	3	4	84	1	0	0	0	0	1	0	0	0	1652	130	5	5	3059	5	C11orf41	11	33581349	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1167097	33581349	101425167	1088	87695											
CAPRIN1	4076	broad.mit.edu	37	chr11	34118203	34118203	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgaatggataccggggccCtgccaatggattcagaggta	14	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34118203	G	G	34118203	3	3	84	1	0	0	0	0	1	0	0	0	2661	681	24	4	1941	4	CAPRIN1	11	34118203	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	536854	34118203	100888313	1089	87696											
LDLRAD3	143458	broad.mit.edu	37	chr11	36248825	36248825	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccggctgcagcaccctgtGctgctgtcccgcctggtggt	13	16	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36248825	T	T	36248825	2	4	84	1	0	0	0	0	0	0	0	1	8779	1306	46	3		3	LDLRAD3	11	36248825	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2130622	36248825	98757691	1090	87697											
COMMD9	29099	broad.mit.edu	37	chr11	36298707	36298707	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagatgaggaaaaaataatGgaaaggggatgagactgact	13	2	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36298707	A	A	36298707	1	1	84	0	1	0	0	0	0	0	0	0	3755	1363	47	4		4	COMMD9	11	36298707	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	49882	36298707	98707809	1091	87698											
PRR5L	79899	broad.mit.edu	37	chr11	36424881	36424881	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcaacgttttcaaaggGggtggcttgcaaagcaacga	13	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36424881	C	C	36424881	2	2	84	1	0	0	0	0	0	0	0	1	12708	1219	43	4		4	PRR5L	11	36424881	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	126174	36424881	98581635	1092	87699											
PRR5L	79899	broad.mit.edu	37	chr11	36483853	36483853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttttaagcaccaatacccCctccccaataacagtctttg	4	15	1	0	rs116727896	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36483853	T	T	36483853	1	4	84	0	1	0	0	0	0	0	0	0	12708	638	22	4		4	PRR5L	11	36483853	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	58972	36483853	98522663	1093	87700											
RAG1	5896	broad.mit.edu	37	chr11	36597068	36597068	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtgatgccacccgtctGgaagcctctcaaaatcttgt	8	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36597068	C	C	36597068	2	2	84	1	0	0	0	0	0	0	0	1	13111	1335	47	4		4	RAG1	11	36597068	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	113215	36597068	98409448	1094	87701											
HSD17B12	51144	broad.mit.edu	37	chr11	43740492	43740492	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgagtctgccatgaagaaGatagaagacaacaacacact	8	9	1	6			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43740492	T	T	43740492	1	4	84	0	1	0	0	0	0	0	0	0	7448	957	33	3		3	HSD17B12	11	43740492	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7143424	43740492	91266024	1095	87702											
ACCSL	390110	broad.mit.edu	37	chr11	44071686	44071686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagtaaggatgttctgGgctgtgttgggacccacccc	14	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44071686	T	T	44071686	1	4	84	0	1	0	0	0	0	0	0	0	134	1247	43	2		2	ACCSL	11	44071686	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	331194	44071686	90934830	1096	87703											
EXT2	2132	broad.mit.edu	37	chr11	44219322	44219322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtttgctgacgatattgGgtcagccatattgttacagc	12	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44219322	T	T	44219322	1	4	84	0	1	0	0	0	0	0	0	0	5367	1247	43	2		2	EXT2	11	44219322	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	147636	44219322	90787194	1097	87704											
SYT13	57586	broad.mit.edu	37	chr11	45265817	45265817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacatgatcatctcgttcCacacggggttgatcttgtgc	9	11	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45265817	A	A	45265817	3	1	84	1	0	0	0	0	1	0	0	0	15588	595	21	2	217	2	SYT13	11	45265817	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1046495	45265817	89740699	1098	87705											
OR4B1	119765	broad.mit.edu	37	chr11	48238838	48238838	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactccataattcagattctCgttatcatccaattgccctt	3	13	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48238838	T	T	48238838	2	4	84	1	0	0	0	0	0	0	0	1	11138	871	31	4		4	OR4B1	11	48238838	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2973021	48238838	86767678	1099	87706											
OR4C13	283092	broad.mit.edu	37	chr11	49974685	49974685	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcacgaagccctctctacCtgtgtctcccacatcacagt	7	16	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49974685	G	G	49974685	2	3	84	1	0	0	0	0	0	0	0	1	11141	668	24	4		4	OR4C13	11	49974685	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1735847	49974685	85031831	1100	87707											
OR4C12	283093	broad.mit.edu	37	chr11	50003262	50003262	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatgggcagagtggtcactGagcgcagatacacaaatata	11	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50003262	T	T	50003262	4	4	84	1	0	0	0	0	0	1	0	0	11140	1294	45	3	157	3	OR4C12	11	50003262	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	28577	50003262	85003254	1101	87708											
OR4C46	119749	broad.mit.edu	37	chr11	51515313	51515313	+	Missense_Mutation	SNP	T	A	A													gaataacatgacagagtttgTtttgctggggcttacagaga							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515313	A	A	51515313	3	1	84	1	0	0	0	0	1	0	0	0	11145	1725	60	5	34	5	OR4C46	11	51515313	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1512051	51515313	83491203	1102	87709	393	2									
OR4C46	119749	broad.mit.edu	37	chr11	51515316	51515316	+	Missense_Mutation	SNP	T	G	G													taacatgacagagtttgtttTgctggggcttacagagaatc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51515316	G	G	51515316	3	3	84	1	0	0	0	0	1	0	0	0	11145	1821	63	5	37	5	OR4C46	11	51515316	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3	51515316	83491200	1103	87710	393	2									
OR5D13	390142	broad.mit.edu	37	chr11	55541512	55541512	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctatatcagccagaggcTatgctttattattgccatat	6	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55541512	C	C	55541512	3	2	84	1	0	0	0	0	1	0	0	0	11248	1522	53	5	601	5	OR5D13	11	55541512	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	4026196	55541512	79465004	1104	87711											
OR5D18	219438	broad.mit.edu	37	chr11	55587737	55587737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctttaatgaaatcagcaCactactcatcgttctcacat	3	13	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55587737	A	A	55587737	3	1	84	1	0	0	0	0	1	0	0	0	11251	478	17	3	634	3	OR5D18	11	55587737	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	46225	55587737	79418779	1105	87712											
OR5D16	390144	broad.mit.edu	37	chr11	55606958	55606958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtcttctccacctgtgCctcccacctgactgccatca	5	18	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55606958	A	A	55606958	3	1	84	1	0	0	0	0	1	0	0	0	11250	739	26	3	733	3	OR5D16	11	55606958	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	19221	55606958	79399558	1106	87713											
SPRYD5	84767	broad.mit.edu	37	chr11	55655699	55655699	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaggaatgtatgaggatctGaagcaaatgtgccataaagc	12	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55655699	T	T	55655699	2	4	84	1	0	0	0	0	0	0	0	1	15229	1277	45	3		3	SPRYD5	11	55655699	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	48741	55655699	79350817	1107	87714											
OR5J2	282775	broad.mit.edu	37	chr11	55944560	55944560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataggtggaatagttaacaCattaatccacacaatcagct	7	8	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944560	A	A	55944560	3	1	84	1	0	0	0	0	1	0	0	0	11259	478	17	3	469	3	OR5J2	11	55944560	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	288861	55944560	79061956	1108	87715											
OR5T3	390154	broad.mit.edu	37	chr11	56020456	56020456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattctgaagatgcattctGctaagggaaggcaaaaggcc	11	9	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56020456	T	T	56020456	3	4	84	1	0	0	0	0	1	0	0	0	11277	1319	46	3	783	3	OR5T3	11	56020456	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	75896	56020456	78986060	1109	87716											
OR5M9	390162	broad.mit.edu	37	chr11	56230837	56230837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgacgacaggtcagcCccaggagagtaaattctgtc	11	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56230837	A	A	56230837	3	1	84	1	0	0	0	0	1	0	0	0	11271	623	22	2	893	2	OR5M9	11	56230837	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	210381	56230837	78775679	1110	87717											
OR5M11	219487	broad.mit.edu	37	chr11	56310560	56310560	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgaggaagaagtacatGggcgtgtgaaggcgagagtc	17	4	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56310560	T	T	56310560	2	4	84	1	0	0	0	0	0	0	0	1	11268	1335	47	2		2	OR5M11	11	56310560	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	79723	56310560	78695956	1111	87718											
APLNR	187	broad.mit.edu	37	chr11	57004500	57004500	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggggagtggagagaagacGggcagagggtcccagggaca	20	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57004500	C	C	57004500	1	2	84	0	1	0	0	0	0	0	0	0	779	1131	39	4		4	APLNR	11	57004500	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	693940	57004500	78002016	1112	87719											
SERPING1	710	broad.mit.edu	37	chr11	57373895	57373895	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctagccaagtggaagacaAcatttgatcccaagaaaacc	7	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57373895	C	C	57373895	3	2	84	1	0	0	0	0	1	0	0	0	14229	43	2	5	922	5	SERPING1	11	57373895	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	369395	57373895	77632621	1113	87720											
OR5B17	219965	broad.mit.edu	37	chr11	58126401	58126401	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggagatgagagtccagcaGgattaatatgatcatcccca	11	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58126401	A	A	58126401	2	1	84	1	0	0	0	0	0	0	0	1	11243	991	35	4		4	OR5B17	11	58126401	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	752506	58126401	76880115	1114	87721											
GLYATL1	92292	broad.mit.edu	37	chr11	58723221	58723221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgccagcagcctgtatGctcggcccagagggagtccc	13	15	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58723221	T	T	58723221	3	4	84	1	0	0	0	0	1	0	0	0	6544	1319	46	3	749	3	GLYATL1	11	58723221	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	596820	58723221	76283295	1115	87722											
OR4D10	390197	broad.mit.edu	37	chr11	59245562	59245562	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctggtgtcctacatagtCatattatcattacccaagtc	5	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59245562	A	A	59245562	2	1	84	1	0	0	0	0	0	0	0	1	11148	813	29	3		3	OR4D10	11	59245562	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	522341	59245562	75760954	1116	87723											
OSBP	5007	broad.mit.edu	37	chr11	59377981	59377981	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccccattggaaatgatgaaGttgcaggagtcctccacggt	11	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59377981	C	C	59377981	3	2	84	1	0	0	0	0	1	0	0	0	11367	1020	36	4	2031	4	OSBP	11	59377981	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	132419	59377981	75628535	1117	87724											
STX3	6809	broad.mit.edu	37	chr11	59559643	59559643	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatgaagctcaagtggacTtccgagaacgcagcaaaggg	12	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59559643	C	C	59559643	3	2	84	1	0	0	0	0	1	0	0	0	15464	1609	56	5	443	5	STX3	11	59559643	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	181662	59559643	75446873	1118	87725											
MS4A6A	64231	broad.mit.edu	37	chr11	59945730	59945730	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggttatagctctcttactCaccaaaagcttggttaacct	7	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59945730	A	A	59945730	1	1	84	0	1	0	0	0	0	0	0	0	9958	841	29	3		3	MS4A6A	11	59945730	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	386087	59945730	75060786	1119	87726											
MS4A14	84689	broad.mit.edu	37	chr11	60164087	60164087	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggacagaagggcaactcaCgtcatcactataaaaccaaa	7	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60164087	T	T	60164087	2	4	84	1	0	0	0	0	0	0	0	1	9952	535	19	4		4	MS4A14	11	60164087	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	218357	60164087	74842429	1120	87727											
MS4A10	341116	broad.mit.edu	37	chr11	60566024	60566024	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggctccccagaccttcagAacccacgcttggccccttct	7	19	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60566024	T	T	60566024	1	4	84	0	1	0	0	0	0	0	0	0	9949	261	9	5		5	MS4A10	11	60566024	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	401937	60566024	74440492	1121	87728											
SYT7	9066	broad.mit.edu	37	chr11	61318856	61318856	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actagcagcctggcacctacTtgatagccttcttctcactg	7	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61318856	C	C	61318856	3	2	84	1	0	0	0	0	1	0	0	0	15598	1623	56	5	1024	5	SYT7	11	61318856	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	752832	61318856	73687660	1122	87729											
AHNAK	79026	broad.mit.edu	37	chr11	62287345	62287345	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaacatcaggtatggagatCttgggagctttgatatttat	10	5	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62287345	T	T	62287345	2	4	84	1	0	0	0	0	0	0	0	1	414	912	32	4		4	AHNAK	11	62287345	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	968489	62287345	72719171	1123	87730											
FERMT3	83706	broad.mit.edu	37	chr11	63974949	63974949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaccctgcgggtcactgGggagtcgcacatcggcgggg	18	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63974949	T	T	63974949	3	4	84	1	0	0	0	0	1	0	0	0	5876	1232	43	2	115	2	FERMT3	11	63974949	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1687604	63974949	71031567	1124	87731											
SPDYC	387778	broad.mit.edu	37	chr11	64940196	64940196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgggcttggactcgggaCcggcgcccccaccatggtgg	15	15	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64940196	A	A	64940196	3	1	84	1	0	0	0	0	1	0	0	0	15144	506	18	3	580	3	SPDYC	11	64940196	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	965247	64940196	70066320	1125	87732											
DRAP1	10589	broad.mit.edu	37	chr11	65687838	65687838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcatcgagctggagcaGcagtttgacttcttgaagga	13	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65687838	T	T	65687838	3	4	84	1	0	0	0	0	1	0	0	0	4795	962	34	3	248	3	DRAP1	11	65687838	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	747642	65687838	69318678	1126	87733											
CATSPER1	117144	broad.mit.edu	37	chr11	65793907	65793907	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctgggcccaacaggcccCgcctggatttcccttctttc	9	17	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65793907	A	A	65793907	1	1	84	0	1	0	0	0	0	0	0	0	2713	667	23	1		1	CATSPER1	11	65793907	5'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	106069	65793907	69212609	1127	87734											
NPAS4	266743	broad.mit.edu	37	chr11	66191384	66191384	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtcctgggcactccgacCatgctgccctcattccctga	8	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66191384	T	T	66191384	2	4	84	1	0	0	0	0	0	0	0	1	10660	581	21	4		4	NPAS4	11	66191384	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	397477	66191384	68815132	1128	87735											
ACTN3	89	broad.mit.edu	37	chr11	66322868	66322868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctagcccaggggaagaccCcacattctccacactgggcc	10	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66322868	A	A	66322868	1	1	84	0	1	0	0	0	0	0	0	0	206	638	22	2		2	ACTN3	11	66322868	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	131484	66322868	68683648	1129	87736											
RBM14	10432	broad.mit.edu	37	chr11	66392039	66392039	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttatgtggctcctctgaCggcccagccagctacctacc	8	17	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66392039	T	T	66392039	3	4	84	1	0	0	0	0	1	0	0	0	13223	536	19	4	698	4	RBM14	11	66392039	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	69171	66392039	68614477	1130	87737											
ANO1	55107	broad.mit.edu	37	chr11	69933992	69933992	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcaaccggaccctggtcagGagggtgcagcacagcgacac	15	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69933992	A	A	69933992	2	1	84	1	0	0	0	0	0	0	0	1	695	1165	41	4		4	ANO1	11	69933992	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3541953	69933992	65072524	1131	87738											
ANO1	55107	broad.mit.edu	37	chr11	69972210	69972210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtacttcgcctggctgGgcgtgtacacccagatgctc	12	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69972210	T	T	69972210	3	4	84	1	0	0	0	0	1	0	0	0	695	1232	43	2	1044	2	ANO1	11	69972210	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	38218	69972210	65034306	1132	87739											
NUMA1	4926	broad.mit.edu	37	chr11	71727612	71727612	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccatgtgaacagagagggGgaacaggcaccagattacca	12	10	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71727612	A	A	71727612	1	1	84	0	1	0	0	0	0	0	0	0	10845	1247	43	4		4	NUMA1	11	71727612	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1755402	71727612	63278904	1133	87740											
P4HA3	283208	broad.mit.edu	37	chr11	74000233	74000233	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcactgaggatatctcttctGaacaaaccattaaattaaaa	4	8	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74000233	C	C	74000233	1	2	84	0	1	0	0	0	0	0	0	0	11452	1305	45	4		4	P4HA3	11	74000233	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2272621	74000233	61006283	1134	87741											
LRRC32	2615	broad.mit.edu	37	chr11	76372248	76372248	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggctgttcccagacaggTccagggaggtcacgcgtggc	15	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76372248	A	A	76372248	3	1	84	1	0	0	0	0	1	0	0	0	9074	1667	58	5	1603	5	LRRC32	11	76372248	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2372015	76372248	58634268	1135	87742											
PRCP	5547	broad.mit.edu	37	chr11	82560085	82560085	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatgacaggacattttccTattaccttgataggccaagc	8	9	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82560085	G	G	82560085	1	3	84	0	1	0	0	0	0	0	0	0	12555	1537	53	5		5	PRCP	11	82560085	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	6187837	82560085	52446431	1136	87743											
DLG2	1740	broad.mit.edu	37	chr11	83544911	83544911	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgatatcagcaactcactActtgtaaaattgtttctcaa	4	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83544911	G	G	83544911	1	3	84	0	1	0	0	0	0	0	0	0	4595	406	14	5		5	DLG2	11	83544911	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	984826	83544911	51461605	1137	87744											
DLG2	1740	broad.mit.edu	37	chr11	83878098	83878098	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctaactgtcacagcctcctCtctactttgagaactagaaa	5	13	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83878098	G	G	83878098	1	3	84	0	1	0	0	0	0	0	0	0	4595	928	32	4		4	DLG2	11	83878098	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	333187	83878098	51128418	1138	87745											
SYTL2	54843	broad.mit.edu	37	chr11	85435562	85435562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaggtctgtgaggctgcCctgtaaaaatggggcactgt	14	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85435562	A	A	85435562	1	1	84	0	1	0	0	0	0	0	0	0	15602	622	22	2		2	SYTL2	11	85435562	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1557464	85435562	49570954	1139	87746											
PRSS23	11098	broad.mit.edu	37	chr11	86544453	86544453	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttttggatcctctgagaGttctaggaggaggaattttg	13	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86544453	A	A	86544453	1	1	84	0	1	0	0	0	0	0	0	0	12726	1044	36	4		4	PRSS23	11	86544453	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1108891	86544453	48462063	1140	87747											
TYR	7299	broad.mit.edu	37	chr11	88911450	88911450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtttggcttttggggacCaaactgcacagagagacgac	12	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88911450	A	A	88911450	3	1	84	1	0	0	0	0	1	0	0	0	16939	594	21	2	331	2	TYR	11	88911450	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2366997	88911450	46095066	1141	87748											
NOX4	50507	broad.mit.edu	37	chr11	89133285	89133285	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataagttttaaatgaccaaTtaagaatttcaactatttca	4	5	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89133285	A	A	89133285	1	1	84	0	1	0	0	0	0	0	0	0	10653	1508	52	5		5	NOX4	11	89133285	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	221835	89133285	45873231	1142	87749											
NAALAD2	10003	broad.mit.edu	37	chr11	89896628	89896628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctttcctaggtgatgacAaaaagtgacttactgaattt	7	6	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89896628	T	T	89896628	1	4	84	0	1	0	0	0	0	0	0	0	10222	145	5	5		5	NAALAD2	11	89896628	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	763343	89896628	45109888	1143	87750											
FAT3	120114	broad.mit.edu	37	chr11	92086419	92086419	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagatttgaaaaagaagtgTacgatgtgagcataagtgaa	11	2	0	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92086419	A	A	92086419	3	1	84	1	0	0	0	0	1	0	0	0	5748	1638	57	5	1143	5	FAT3	11	92086419	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2189791	92086419	42920097	1144	87751											
FAT3	120114	broad.mit.edu	37	chr11	92086802	92086802	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaaatgggtacatcacCtatagtatcgctagcctgaa	10	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92086802	G	G	92086802	2	3	84	1	0	0	0	0	0	0	0	1	5748	668	24	4		4	FAT3	11	92086802	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	383	92086802	42919714	1145	87752											
FAT3	120114	broad.mit.edu	37	chr11	92087706	92087706	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatgacttaggtaatccaCagaaatcgtcatggagactg	9	8	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92087706	T	T	92087706	4	4	84	1	0	0	0	0	0	1	0	0	5748	479	17	4	2430	4	FAT3	11	92087706	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	904	92087706	42918810	1146	87753											
FAT3	120114	broad.mit.edu	37	chr11	92533553	92533553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattgtccaaccatcggaaGcagcggatggagcctctgta	11	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92533553	T	T	92533553	3	4	84	1	0	0	0	0	1	0	0	0	5748	962	34	3	7408	3	FAT3	11	92533553	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	445847	92533553	42472963	1147	87754											
FAT3	120114	broad.mit.edu	37	chr11	92623945	92623945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctggccagcacactgaGcccagactgcaggagaaggc	12	15	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92623945	T	T	92623945	3	4	84	1	0	0	0	0	1	0	0	0	5748	971	34	3	13438	3	FAT3	11	92623945	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	90392	92623945	42382571	1148	87755											
HEPHL1	341208	broad.mit.edu	37	chr11	93779012	93779012	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgatgtgattgtcattcAtttaaagaactttgcttctc	9	6	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93779012	C	C	93779012	3	2	84	1	0	0	0	0	1	0	0	0	7122	217	8	5	350	5	HEPHL1	11	93779012	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1155067	93779012	41227504	1149	87756											
HEPHL1	341208	broad.mit.edu	37	chr11	93819304	93819304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactcaccgagactccctgGccctgtttccccacatggcc	9	18	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93819304	T	T	93819304	3	4	84	1	0	0	0	0	1	0	0	0	7122	1203	42	3	2071	3	HEPHL1	11	93819304	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	40292	93819304	41187212	1150	87757											
MRE11A	4361	broad.mit.edu	37	chr11	94153343	94153343	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataaaaggatcatcatcaTcatcctgaaatgagatacaa	5	8	5	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94153343	C	C	94153343	3	2	84	1	0	0	0	0	1	0	0	0	9853	1435	50	5	55	5	MRE11A	11	94153343	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	334039	94153343	40853173	1151	87758											
MRE11A	4361	broad.mit.edu	37	chr11	94223994	94223994	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcacaaatacaaaccacaCtcacttcattttcctgggca	5	13	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94223994	T	T	94223994	1	4	84	0	1	0	0	0	0	0	0	0	9853	580	20	4		4	MRE11A	11	94223994	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	70651	94223994	40782522	1152	87759											
AMOTL1	154810	broad.mit.edu	37	chr11	94603863	94603863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttggcagagaactctcCtggccatgggaagtcgcctg	12	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94603863	A	A	94603863	3	1	84	1	0	0	0	0	1	0	0	0	583	681	24	2	2824	2	AMOTL1	11	94603863	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	379869	94603863	40402653	1153	87760											
KDM4DL	390245	broad.mit.edu	37	chr11	94759260	94759260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaccctacctgtactttgGcatgtggaagaccacgtttg	9	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94759260	T	T	94759260	3	4	84	1	0	0	0	0	1	0	0	0	8202	1203	42	3	541	3	KDM4DL	11	94759260	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	155397	94759260	40247256	1154	87761											
MAML2	84441	broad.mit.edu	37	chr11	95824963	95824963	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctactgtctttggtcttgatCttgtcccaatacaaacataa	5	10	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95824963	G	G	95824963	1	3	84	0	1	0	0	0	0	0	0	0	9298	928	32	4		4	MAML2	11	95824963	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1065703	95824963	39181553	1155	87762											
MMP10	4319	broad.mit.edu	37	chr11	102649400	102649400	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcatcatcaaagtgaatatCtccataaagcccaggtccag	6	11	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102649400	A	A	102649400	3	1	84	1	0	0	0	0	1	0	0	0	9742	913	32	3	881	3	MMP10	11	102649400	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6824437	102649400	32357116	1156	87763											
CARD18	59082	broad.mit.edu	37	chr11	105010544	105010544	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcagggcgtgtacacagatCaatgaacaatacttacacct	9	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105010544	G	G	105010544	1	3	84	0	1	0	0	0	0	0	0	0	2675	841	29	4		4	CARD18	11	105010544	5'Flank	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2361144	105010544	29995972	1157	87764											
KIAA1826	84437	broad.mit.edu	37	chr11	105881530	105881530	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcttcatcacattaattgTtgtattgagctgcttggaaa	8	7	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105881530	C	C	105881530	3	2	84	1	0	0	0	0	1	0	0	0	8330	1725	60	5	930	5	KIAA1826	11	105881530	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	870986	105881530	29124986	1158	87765											
CWF19L2	143884	broad.mit.edu	37	chr11	107274828	107274829	+	Intron	DNP	CC	AA	AA													catatatggttctcctttctCcatgtgagactgtctctgtc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	107274829	AA	AA	107274828	1	1	84	0	1	0	0	0	0	0	0	0	4105	870	30	3		3	CWF19L2	11	107274828	Intron	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	1393298	107274828	27731688	1159	87766											
ELMOD1	55531	broad.mit.edu	37	chr11	107501343	107501343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggtatgatggaagataCgatgttgtctttcagtgtag	13	3	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107501343	A	A	107501343	1	1	84	0	1	0	0	0	0	0	0	0	5110	551	19	3		3	ELMOD1	11	107501343	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	226515	107501343	27505173	1160	87767											
ELMOD1	55531	broad.mit.edu	37	chr11	107514323	107514323	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcagttgctgtcatttgAgtacaagtatctggacggca	11	7	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107514323	C	C	107514323	1	2	84	0	1	0	0	0	0	0	0	0	5110	319	11	5		5	ELMOD1	11	107514323	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	12980	107514323	27492193	1161	87768											
ATM	472	broad.mit.edu	37	chr11	108143387	108143387	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgaaaattttaaagcagtCtttgtttgttaatgagtaat	7	2	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108143387	G	G	108143387	1	3	84	0	1	0	0	0	0	0	0	0	1113	928	32	4		4	ATM	11	108143387	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	629064	108143387	26863129	1162	87769											
C11orf53	341032	broad.mit.edu	37	chr11	111156581	111156581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctctggaagatctgcaCcacactccggggtaccctac	9	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111156581	A	A	111156581	3	1	84	1	0	0	0	0	1	0	0	0	1660	506	18	3	523	3	C11orf53	11	111156581	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3013194	111156581	23849935	1163	87770											
C11orf52	91894	broad.mit.edu	37	chr11	111796789	111796789	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagcaacttacattatgctGacattcaagtgtgcagccgt	8	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111796789	T	T	111796789	3	4	84	1	0	0	0	0	1	0	0	0	1659	1290	45	3	252	3	C11orf52	11	111796789	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	640208	111796789	23209727	1164	87771											
HTR3B	9177	broad.mit.edu	37	chr11	113815222	113815222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagagcaagaccctgtccCtaaagaaaacaaaaaaatct	5	9	1	3	rs11606750		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113815222	A	A	113815222	1	1	84	0	1	0	0	0	0	0	0	0	7515	696	24	2		2	HTR3B	11	113815222	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2018433	113815222	21191294	1165	87772											
HTR3A	3359	broad.mit.edu	37	chr11	113856663	113856663	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccttaattgctgcccacctGtgtcccatcatcacagggtc	7	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113856663	C	C	113856663	1	2	84	0	1	0	0	0	0	0	0	0	7514	1392	48	4		4	HTR3A	11	113856663	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	41441	113856663	21149853	1166	87773											
NNMT	4837	broad.mit.edu	37	chr11	114167310	114167310	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcacctccaaggacacctAtctaagccattttaaccctc	3	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114167310	G	G	114167310	3	3	84	1	0	0	0	0	1	0	0	0	10604	449	16	5	34	5	NNMT	11	114167310	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	310647	114167310	20839206	1167	87774											
RBM7	10179	broad.mit.edu	37	chr11	114272416	114272416	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctaaacacctttttgtttGtaggctgggccagtaataaa	8	7	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114272416	C	C	114272416	1	2	84	0	1	0	0	0	0	0	0	0	13253	1392	48	4		4	RBM7	11	114272416	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	105106	114272416	20734100	1168	87775											
FAM55A	120400	broad.mit.edu	37	chr11	114401094	114401094	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgaagacatgagaggtGccattaacaaatttgccttt	9	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114401094	C	C	114401094	2	2	84	1	0	0	0	0	0	0	0	1	5635	1306	46	4		4	FAM55A	11	114401094	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	128678	114401094	20605422	1169	87776											
FAM55B	120406	broad.mit.edu	37	chr11	114569357	114569357	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaaacacaaatgctgaactGtgccagtacatggatgacag	9	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114569357	C	C	114569357	2	2	84	1	0	0	0	0	0	0	0	1	5636	1364	48	4		4	FAM55B	11	114569357	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	168263	114569357	20437159	1170	87777											
ZNF259	8882	broad.mit.edu	37	chr11	116655728	116655728	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatgctagtggtcatctatGttggtgacaaggaagacaga	13	5	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116655728	C	C	116655728	1	2	84	0	1	0	0	0	0	0	0	0	17927	1392	48	4		4	ZNF259	11	116655728	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2086371	116655728	18350788	1171	87778											
DSCAML1	57453	broad.mit.edu	37	chr11	117310154	117310154	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgagtcttcactgccaggGgcgaggatggggcgggtggg	21	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117310154	A	A	117310154	1	1	84	0	1	0	0	0	0	0	0	0	4809	1247	43	4		4	DSCAML1	11	117310154	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	654426	117310154	17696362	1172	87779											
MLL	4297	broad.mit.edu	37	chr11	118376837	118376837	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagttcaggaatgtttccAcaactggggacatcacagac	9	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118376837	G	G	118376837	2	3	84	1	0	0	0	0	0	0	0	1	9713	146	6	5		5	MLL	11	118376837	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1066683	118376837	16629679	1173	87780											
TMEM25	84866	broad.mit.edu	37	chr11	118404185	118404185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggcattgttgtggctGctgggcttgcactgggcacc	16	10	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118404185	T	T	118404185	3	4	84	1	0	0	0	0	1	0	0	0	16273	1319	46	3	738	3	TMEM25	11	118404185	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	27348	118404185	16602331	1174	87781											
FOXR1	283150	broad.mit.edu	37	chr11	118849710	118849710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgtgggtaaatcccaaCattgtgtatccccctggaaa	10	9	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118849710	A	A	118849710	3	1	84	1	0	0	0	0	1	0	0	0	6091	477	17	3	190	3	FOXR1	11	118849710	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	445525	118849710	16156806	1175	87782											
TRIM29	23650	broad.mit.edu	37	chr11	119983097	119983097	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaagagcaggggtgtgGcgcctcgttccttccgccag	17	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119983097	T	T	119983097	1	4	84	0	1	0	0	0	0	0	0	0	16627	1218	42	3		3	TRIM29	11	119983097	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1133387	119983097	15023419	1176	87783											
POU2F3	25833	broad.mit.edu	37	chr11	120170297	120170297	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgatgtccccagcttgtAaattctgtggtgtatgtgta	12	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120170297	C	C	120170297	1	2	84	0	1	0	0	0	0	0	0	0	12369	377	13	5		5	POU2F3	11	120170297	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	187200	120170297	14836219	1177	87784											
TMEM136	219902	broad.mit.edu	37	chr11	120201273	120201273	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttaagtcagccatgggaacCaggttggaaatatgactgtt	12	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120201273	G	G	120201273	1	3	84	0	1	0	0	0	0	0	0	0	16175	609	21	4		4	TMEM136	11	120201273	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	30976	120201273	14805243	1178	87785											
GRIK4	2900	broad.mit.edu	37	chr11	120745989	120745989	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtggtgatggcaggtcctcCtctctgttccatttcattga	10	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120745989	G	G	120745989	1	3	84	0	1	0	0	0	0	0	0	0	6842	696	24	4		4	GRIK4	11	120745989	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	544716	120745989	14260527	1179	87786											
GRAMD1B	57476	broad.mit.edu	37	chr11	123484121	123484121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagagttgcattggagGgctgaaggtggcctctcctg	16	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123484121	T	T	123484121	1	4	84	0	1	0	0	0	0	0	0	0	6814	1247	43	2		2	GRAMD1B	11	123484121	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2738132	123484121	11522395	1180	87787											
GRAMD1B	57476	broad.mit.edu	37	chr11	123484258	123484258	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactacaacggtgcggaggAggaagcgtccccatgcccac	13	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123484258	T	T	123484258	3	4	84	1	0	0	0	0	1	0	0	0	6814	295	11	5	1748	5	GRAMD1B	11	123484258	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	137	123484258	11522258	1181	87788											
ROBO3	64221	broad.mit.edu	37	chr11	124747551	124747551	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccggacgacagatattacAacggtgaggagttctcattc	10	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124747551	G	G	124747551	3	3	84	1	0	0	0	0	1	0	0	0	13626	130	5	5	3061	5	ROBO3	11	124747551	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1263293	124747551	10258965	1182	87789											
HEPN1	641654	broad.mit.edu	37	chr11	124789750	124789750	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggaggcattaaggaggaGggaatggaatacacagaggg	17	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124789750	A	A	124789750	3	1	84	1	0	0	0	0	1	0	0	0	7123	1000	35	4	106	4	HEPN1	11	124789750	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	42199	124789750	10216766	1183	87790											
PATE1	160065	broad.mit.edu	37	chr11	125617480	125617481	+	Intron	DNP	TG	AT	AT													aggaagaggttcacgcttgaTgggctctggcaaagccctgt							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	125617481	AT	AT	125617480	1	1	84	0	1	0	0	0	0	0	0	0	11567	1479	51	5		5	PATE1	11	125617480	Intron	DNP	TG	TCGA-17-Z055-01A-01W-0747-08	827730	125617480	9389036	1184	87791											
ETS1	2113	broad.mit.edu	37	chr11	128333509	128333509	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaagaaactgccatagctgGattggtccactgcctagaaa	10	9	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128333509	T	T	128333509	2	4	84	1	0	0	0	0	0	0	0	1	5317	1164	41	3		3	ETS1	11	128333509	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2716029	128333509	6673007	1185	87792											
ETS1	2113	broad.mit.edu	37	chr11	128359246	128359246	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaagtctggggccagctcGagaaagcagtctttacccag	11	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128359246	A	A	128359246	2	1	84	1	0	0	0	0	0	0	0	1	5317	1045	37	4		4	ETS1	11	128359246	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	25737	128359246	6647270	1186	87793											
FLI1	2313	broad.mit.edu	37	chr11	128651903	128651903	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaccgaccaatcctcacgaTtgagtgtcaaagaaggtaag	9	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128651903	G	G	128651903	3	3	84	1	0	0	0	0	1	0	0	0	5981	1490	52	5	658	5	FLI1	11	128651903	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	292657	128651903	6354613	1187	87794											
ARHGAP32	9743	broad.mit.edu	37	chr11	128839071	128839071	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacagcacactggggtcccTctccacgttctgggtatgat	11	12	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128839071	A	A	128839071	3	1	84	1	0	0	0	0	1	0	0	0	883	1550	54	5	272	5	ARHGAP32	11	128839071	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	187168	128839071	6167445	1188	87795											
ADAMTS8	11095	broad.mit.edu	37	chr11	130275920	130275920	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccatcagccgtcttcaGcgccaggtagttcccatcgt	9	16	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130275920	A	A	130275920	2	1	84	1	0	0	0	0	0	0	0	1	272	962	34	4		4	ADAMTS8	11	130275920	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1436849	130275920	4730596	1189	87796											
NTM	50863	broad.mit.edu	37	chr11	131781566	131781566	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagctgacattgttctgcGaactgatggtttgtatgggg	16	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131781566	T	T	131781566	1	4	84	0	1	0	0	0	0	0	0	0	10794	1073	37	3		3	NTM	11	131781566	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1505646	131781566	3224950	1190	87797											
NTM	50863	broad.mit.edu	37	chr11	132177643	132177643	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggcatcaccagggagcagtCaggggactacgagtgcagtg	17	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132177643	A	A	132177643	4	1	84	1	0	0	0	0	0	1	0	0	10794	838	29	3	687	3	NTM	11	132177643	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	396077	132177643	2828873	1191	87798											
SPATA19	219938	broad.mit.edu	37	chr11	133712477	133712477	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaaaaggccattcgtaCattggcatatgggatctgag	12	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133712477	T	T	133712477	1	4	84	0	1	0	0	0	0	0	0	0	15120	493	17	4		4	SPATA19	11	133712477	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1534834	133712477	1294039	1192	87799											
KDM5A	5927	broad.mit.edu	37	chr12	432318	432318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtgtcataggactgtgcCctgacttttacaccatatag	8	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	432318	A	A	432318	3	1	84	1	0	0	0	0	1	0	0	0	8203	622	22	2	2919	2	KDM5A	12	432318	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08		432318	133419577	1193	87800											
ITFG2	55846	broad.mit.edu	37	chr12	2930910	2930910	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagacaagctgctgtggtcAgtgcaggtggatcaccagct	14	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2930910	T	T	2930910	2	4	84	1	0	0	0	0	0	0	0	1	7940	175	7	5		5	ITFG2	12	2930910	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2498592	2930910	130920985	1194	87801											
FGF23	8074	broad.mit.edu	37	chr12	4479598	4479598	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgaccacccctaatgGgtcactggccatcgggctgt	11	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4479598	A	A	4479598	3	1	84	1	0	0	0	0	1	0	0	0	5909	1232	43	4	92	4	FGF23	12	4479598	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1548688	4479598	129372297	1195	87802											
DYRK4	8798	broad.mit.edu	37	chr12	4708299	4708299	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcttgcagatgctttcGgtagagaaaatcattcactg	10	7	2	2	rs138577409	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4708299	T	T	4708299	2	4	84	1	0	0	0	0	0	0	0	1	4898	1103	39	1		1	DYRK4	12	4708299	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	228701	4708299	129143596	1196	87803											
AKAP3	10566	broad.mit.edu	37	chr12	4744564	4744564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttcagtaagggctactcCtctttttctggcagaatttg	11	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4744564	A	A	4744564	1	1	84	0	1	0	0	0	0	0	0	0	452	696	24	2		2	AKAP3	12	4744564	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	36265	4744564	129107331	1197	87804											
KCNA1	3736	broad.mit.edu	37	chr12	5021276	5021276	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcttcttcgcctgcccCagcaagacggacttcttcaa	9	15	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5021276	A	A	5021276	2	1	84	1	0	0	0	0	0	0	0	1	8071	581	21	2		2	KCNA1	12	5021276	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	276712	5021276	128830619	1198	87805											
KCNA5	3741	broad.mit.edu	37	chr12	5153719	5153719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgctttgagacgcagctgGgcaccctggcgcagttcccc	13	15	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5153719	T	T	5153719	3	4	84	1	0	0	0	0	1	0	0	0	8076	1232	43	2	408	2	KCNA5	12	5153719	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	132443	5153719	128698176	1199	87806											
NTF3	4908	broad.mit.edu	37	chr12	5603743	5603743	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcccttgtatctcatggaGgattacgtgggcagccccgt	12	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603743	A	A	5603743	2	1	84	1	0	0	0	0	0	0	0	1	10791	991	35	4		4	NTF3	12	5603743	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	450024	5603743	128248152	1200	87807											
NTF3	4908	broad.mit.edu	37	chr12	5604132	5604132	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcctgtgtgtgtgccttgtCgagaaaaatcggaagaacat	12	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5604132	G	G	5604132	3	3	84	1	0	0	0	0	1	0	0	0	10791	893	31	4	797	4	NTF3	12	5604132	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	389	5604132	128247763	1201	87808											
ANO2	57101	broad.mit.edu	37	chr12	5672676	5672676	+	Frame_Shift_Del	DEL	T	-	-													tcttgatctggtcgctgatgTccgtggggatgtctggaatc							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5672676	-	-	5672676	7	5	84	1	0	1	0	1	0	0	0	0	697	1667	58	0	214	0	ANO2	12	5672676	Frame_Shift_Del	DEL	T	TCGA-17-Z055-01A-01W-0747-08	68544	5672676	128179219	1202	87809											
ANO2	57101	broad.mit.edu	37	chr12	5674857	5674857	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagaaatgtggtgttaagAtcaggagcgcatggagaaaa	14	3	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5674857	T	T	5674857	1	4	84	0	1	0	0	0	0	0	0	0	697	348	12	5		5	ANO2	12	5674857	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2181	5674857	128177038	1203	87810											
GPR162	27239	broad.mit.edu	37	chr12	6935530	6935530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttacaggtatggaactgGgggatacatctcctaccctt	9	10	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6935530	T	T	6935530	1	4	84	0	1	0	0	0	0	0	0	0	6731	1247	43	2		2	GPR162	12	6935530	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1260673	6935530	126916365	1204	87811											
CD163L1	283316	broad.mit.edu	37	chr12	7521404	7521404	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctattgataccactggctgcGacccacagactcatatttct	6	13	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7521404	A	A	7521404	1	1	84	0	1	0	0	0	0	0	0	0	2998	1073	37	4		4	CD163L1	12	7521404	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	585874	7521404	126330491	1205	87812											
CD163L1	283316	broad.mit.edu	37	chr12	7559427	7559427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttagttccacctacaagcCttagttcaagatcactacta	6	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7559427	A	A	7559427	3	1	84	1	0	0	0	0	1	0	0	0	2998	681	24	2	3633	2	CD163L1	12	7559427	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	38023	7559427	126292468	1206	87813											
CD163	9332	broad.mit.edu	37	chr12	7656250	7656250	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagcttttaccagcagatcCagagtcttcaagtagcacca	8	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7656250	G	G	7656250	3	3	84	1	0	0	0	0	1	0	0	0	2997	603	21	4	3497	4	CD163	12	7656250	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	96823	7656250	126195645	1207	87814											
FOXJ2	55810	broad.mit.edu	37	chr12	8205317	8205317	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaattgagggaacagcttcCcatccactctccttttactc	5	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8205317	T	T	8205317	1	4	84	0	1	0	0	0	0	0	0	0	6072	638	22	4		4	FOXJ2	12	8205317	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	549067	8205317	125646578	1208	87815											
PZP	5858	broad.mit.edu	37	chr12	9356495	9356495	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggctcagaaggacacagcCcttcttaggggcctcagtgt	13	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9356495	T	T	9356495	3	4	84	1	0	0	0	0	1	0	0	0	12977	623	22	4	4452	4	PZP	12	9356495	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1151178	9356495	124495400	1209	87816											
OLR1	4973	broad.mit.edu	37	chr12	10313570	10313570	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagttatgtttgtgtaaaAgcagtactgcagttcttaaa	9	5	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10313570	T	T	10313570	1	4	84	0	1	0	0	0	0	0	0	0	10957	87	3	5		5	OLR1	12	10313570	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	957075	10313570	123538325	1210	87817											
TAS2R14	50840	broad.mit.edu	37	chr12	11091043	11091043	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagattttcctccaaccttTcagaggtccaaactgatatg	6	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11091043	A	A	11091043	3	1	84	1	0	0	0	0	1	0	0	0	15687	1783	62	5	192	5	TAS2R14	12	11091043	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	777473	11091043	122760852	1211	87818											
GUCY2C	2984	broad.mit.edu	37	chr12	14781651	14781651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggatcttcctcccaacaGttttttacaagtaggtacac	6	11	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14781651	T	T	14781651	3	4	84	1	0	0	0	0	1	0	0	0	6961	1020	36	3	1075	3	GUCY2C	12	14781651	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3690608	14781651	119070244	1212	87819											
STRAP	11171	broad.mit.edu	37	chr12	16043573	16043573	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggacaggataaactgttaCgcatatatgacttgaacaaa	10	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16043573	T	T	16043573	3	4	84	1	0	0	0	0	1	0	0	0	15444	536	19	4	387	4	STRAP	12	16043573	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1261922	16043573	117808322	1213	87820											
PDE3A	5139	broad.mit.edu	37	chr12	20806953	20806953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcctcagctggccaacCttcaggaatccttcatctct	6	16	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20806953	A	A	20806953	3	1	84	1	0	0	0	0	1	0	0	0	11731	681	24	2	3056	2	PDE3A	12	20806953	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4763380	20806953	113044942	1214	87821											
KCNJ8	3764	broad.mit.edu	37	chr12	21926524	21926524	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgccagcacatactcctcCgggatgatactctttctggc	9	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21926524	T	T	21926524	2	4	84	1	0	0	0	0	0	0	0	1	8126	639	23	4		4	KCNJ8	12	21926524	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1119571	21926524	111925371	1215	87822											
LRMP	4033	broad.mit.edu	37	chr12	25257441	25257441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacctgacatgaactggggCataaacaatgggaatcactt	9	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25257441	A	A	25257441	1	1	84	0	1	0	0	0	0	0	0	0	9037	725	25	3		3	LRMP	12	25257441	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3330917	25257441	108594454	1216	87823											
LYRM5	144363	broad.mit.edu	37	chr12	25357145	25357145	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcaaagaacttattgcaCagggcgaatttgtaatgaaa	9	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25357145	T	T	25357145	4	4	84	1	0	0	0	0	0	1	0	0	9210	479	17	4	178	4	LYRM5	12	25357145	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	99704	25357145	108494750	1217	87824											
ITPR2	3709	broad.mit.edu	37	chr12	26749952	26749952	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaccagggtgatgtggtagGctaaggggccactctcatcc	13	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26749952	C	C	26749952	3	2	84	1	0	0	0	0	1	0	0	0	7991	1203	42	4	4095	4	ITPR2	12	26749952	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1392807	26749952	107101943	1218	87825											
ITPR2	3709	broad.mit.edu	37	chr12	26755443	26755443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatctttaaaaggaagaGggaaagcatcaaatataata	7	4	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26755443	T	T	26755443	1	4	84	0	1	0	0	0	0	0	0	0	7991	1015	35	2		2	ITPR2	12	26755443	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5491	26755443	107096452	1219	87826											
TMTC1	83857	broad.mit.edu	37	chr12	29904535	29904535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacttccccaggcatccCaggctgcactaggtgatgct	9	15	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29904535	A	A	29904535	1	1	84	0	1	0	0	0	0	0	0	0	16383	609	21	2		2	TMTC1	12	29904535	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3149092	29904535	103947360	1220	87827											
DENND5B	160518	broad.mit.edu	37	chr12	31687607	31687607	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attttatatcttgcacgaagGagccactggtacttagacac	8	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31687607	A	A	31687607	1	1	84	0	1	0	0	0	0	0	0	0	4477	1189	41	4		4	DENND5B	12	31687607	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1783072	31687607	102164288	1221	87828											
PKP2	5318	broad.mit.edu	37	chr12	32975561	32975561	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcacacacaattctccGtggcctgagaaaacaggaca	9	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32975561	A	A	32975561	3	1	84	1	0	0	0	0	1	0	0	0	12080	1145	40	4	858	4	PKP2	12	32975561	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1287954	32975561	100876334	1222	87829											
SYT10	341359	broad.mit.edu	37	chr12	33579224	33579224	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcttttacggctggcttttCattttccttaatttcttttt	5	8	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33579224	G	G	33579224	3	3	84	1	0	0	0	0	1	0	0	0	15585	835	29	4	1237	4	SYT10	12	33579224	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	603663	33579224	100272671	1223	87830											
ALG10B	144245	broad.mit.edu	37	chr12	38712250	38712250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttccacaaggtacaacCcagaaacaaggtatgtttca	7	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38712250	A	A	38712250	3	1	84	1	0	0	0	0	1	0	0	0	512	623	22	2	365	2	ALG10B	12	38712250	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5133026	38712250	95139645	1224	87831											
ADAMTS20	80070	broad.mit.edu	37	chr12	43824150	43824150	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtaaaccatgattcttTttacctgtctgtcactgggg	9	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43824150	C	C	43824150	1	2	84	0	1	0	0	0	0	0	0	0	266	1856	64	5		5	ADAMTS20	12	43824150	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5111900	43824150	90027745	1225	87832											
ANO6	196527	broad.mit.edu	37	chr12	45822988	45822988	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaatacctaacccaaaAgcttcttcatgagaatcacc	4	11	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45822988	T	T	45822988	3	4	84	1	0	0	0	0	1	0	0	0	701	72	3	5	2725	5	ANO6	12	45822988	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1998838	45822988	88028907	1226	87833											
ARID2	196528	broad.mit.edu	37	chr12	46230774	46230774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggaaatattgcagctgaGgtaagcatgtgactgtacct	11	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46230774	T	T	46230774	3	4	84	1	0	0	0	0	1	0	0	0	917	1014	35	2	1053	2	ARID2	12	46230774	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	407786	46230774	87621121	1227	87834											
SLC38A1	81539	broad.mit.edu	37	chr12	46601048	46601048	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgagaacatttttagaaAgaagatacgaaggcttatgt	9	3	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46601048	G	G	46601048	1	3	84	0	1	0	0	0	0	0	0	0	14715	87	3	5		5	SLC38A1	12	46601048	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	370274	46601048	87250847	1228	87835											
DDX23	9416	broad.mit.edu	37	chr12	49237828	49237828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttctcgttctttgtgccgtCgttctctggaagaccgcaaa	10	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49237828	A	A	49237828	3	1	84	1	0	0	0	0	1	0	0	0	4383	884	31	3	2307	3	DDX23	12	49237828	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2636780	49237828	84614067	1229	87836											
WNT1	7471	broad.mit.edu	37	chr12	49373153	49373153	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaatctcccgccattctctCcagccacatacccccaggaa	4	18	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49373153	G	G	49373153	1	3	84	0	1	0	0	0	0	0	0	0	17508	870	30	4		4	WNT1	12	49373153	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	135325	49373153	84478742	1230	87837											
SLC4A8	9498	broad.mit.edu	37	chr12	51852413	51852413	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggagtgaattgtgaacaTagtcctgtggatttaagcaa	11	4	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51852413	A	A	51852413	3	1	84	1	0	0	0	0	1	0	0	0	14773	1403	49	5	860	5	SLC4A8	12	51852413	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2479260	51852413	81999482	1231	87838											
SLC4A8	9498	broad.mit.edu	37	chr12	51856282	51856282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtggctattgtcacttacTgactgcccaccatggacaaa	8	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51856282	C	C	51856282	1	2	84	0	1	0	0	0	0	0	0	0	14773	1595	55	5		5	SLC4A8	12	51856282	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3869	51856282	81995613	1232	87839											
KRT84	3890	broad.mit.edu	37	chr12	52775314	52775314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaactggatttcctgtGttggaggattggggagacag	16	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52775314	T	T	52775314	1	4	84	0	1	0	0	0	0	0	0	0	8569	1392	48	3		3	KRT84	12	52775314	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	919032	52775314	81076581	1233	87840											
KRT6C	286887	broad.mit.edu	37	chr12	52863166	52863166	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcagaagagtgcgagggcAggggaggaaggcaagcaaag	19	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52863166	C	C	52863166	1	2	84	0	1	0	0	0	0	0	0	0	8553	203	7	5		5	KRT6C	12	52863166	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	87852	52863166	80988729	1234	87841											
KRT77	374454	broad.mit.edu	37	chr12	53084909	53084909	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagtttgaggagagggCggtgaggggcaggcgtgatg	24	3	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53084909	A	A	53084909	1	1	84	0	1	0	0	0	0	0	0	0	8561	783	27	3		3	KRT77	12	53084909	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	221743	53084909	80766986	1235	87842											
PPP1R1A	5502	broad.mit.edu	37	chr12	54974131	54974131	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaatccggtgtccatgcattCccaaactgcagtcttgatcc	7	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54974131	T	T	54974131	1	4	84	0	1	0	0	0	0	0	0	0	12468	870	30	4		4	PPP1R1A	12	54974131	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1889222	54974131	78877764	1236	87843											
MARS	4141	broad.mit.edu	37	chr12	57882953	57882953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggcctcactgtcatttGtgtggctttatttgcagcca	9	10	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57882953	T	T	57882953	1	4	84	0	1	0	0	0	0	0	0	0	9408	1392	48	3		3	MARS	12	57882953	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2908822	57882953	75968942	1237	87844											
MBD6	114785	broad.mit.edu	37	chr12	57920459	57920459	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccggcctgccctctgcctCccctggctggtggagaggct	14	17	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57920459	G	G	57920459	3	3	84	1	0	0	0	0	1	0	0	0	9441	855	30	4	1549	4	MBD6	12	57920459	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	37506	57920459	75931436	1238	87845											
GEFT	115557	broad.mit.edu	37	chr12	58009224	58009224	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gttggttgggcatgtcaggcGaggaagggaggagcagagaa	20	4	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58009224	C	C	58009224	1	2	84	0	1	0	0	0	0	0	0	0	6392	1073	37	4		4	GEFT	12	58009224	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	88765	58009224	75842671	1239	87846											
SLC26A10	65012	broad.mit.edu	37	chr12	58016511	58016511	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccccccattttctctgCcttccttatctcactgaagc	3	18	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58016511	T	T	58016511	1	4	84	0	1	0	0	0	0	0	0	0	14629	754	26	4		4	SLC26A10	12	58016511	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	7287	58016511	75835384	1240	87847											
FAM19A2	338811	broad.mit.edu	37	chr12	62147338	62147338	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgccacttaaattggttacTgcacaagctccgttctctat	6	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62147338	A	A	62147338	1	1	84	0	1	0	0	0	0	0	0	0	5579	1595	55	5		5	FAM19A2	12	62147338	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	4130827	62147338	71704557	1241	87848											
DPY19L2	283417	broad.mit.edu	37	chr12	64020297	64020297	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtaataagacctcccagTtgagtcccactgtaaaaaaa	6	10	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64020297	G	G	64020297	3	3	84	1	0	0	0	0	1	0	0	0	4781	1722	60	5	1527	5	DPY19L2	12	64020297	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1872959	64020297	69831598	1242	87849											
WIF1	11197	broad.mit.edu	37	chr12	65462665	65462665	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcctgttttccaagacaTgggaaaccaacttgaacaac	6	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65462665	A	A	65462665	2	1	84	1	0	0	0	0	0	0	0	1	17493	1451	51	5		5	WIF1	12	65462665	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1442368	65462665	68389230	1243	87850											
CAND1	55832	broad.mit.edu	37	chr12	67691106	67691106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgaatatttgcattgaGgtcagaggccagacatttag	11	6	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67691106	T	T	67691106	1	4	84	0	1	0	0	0	0	0	0	0	2641	1015	35	2		2	CAND1	12	67691106	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2228441	67691106	66160789	1244	87851											
FRS2	10818	broad.mit.edu	37	chr12	69965981	69965981	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcatcccatccgtcaagcAgacatccttctgtgggaagt	8	13	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69965981	T	T	69965981	4	4	84	1	0	0	0	0	0	1	0	0	6121	180	7	5	510	5	FRS2	12	69965981	Nonsense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2274875	69965981	63885914	1245	87852											
PTPRB	5787	broad.mit.edu	37	chr12	71002981	71002981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtagggcacaacgcggCccccagggtgtcactgctat	13	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71002981	A	A	71002981	3	1	84	1	0	0	0	0	1	0	0	0	12904	739	26	3	5924	3	PTPRB	12	71002981	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1037000	71002981	62848914	1246	87853											
LGR5	8549	broad.mit.edu	37	chr12	71928963	71928963	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaatttgcgaagccttcaatCcctgtaagtatagtagacat	8	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71928963	T	T	71928963	3	4	84	1	0	0	0	0	1	0	0	0	8829	855	30	4	439	4	LGR5	12	71928963	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	925982	71928963	61922932	1247	87854											
ZFC3H1	196441	broad.mit.edu	37	chr12	72056598	72056598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacagcacgttaatatacCcaatgaagcagtcttaagaa	6	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72056598	A	A	72056598	1	1	84	0	1	0	0	0	0	0	0	0	17759	638	22	2		2	ZFC3H1	12	72056598	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	127635	72056598	61795297	1248	87855											
KCNC2	3747	broad.mit.edu	37	chr12	75601819	75601819	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagcgccgagttaaagatcTtagccgtcaaagacacacca	8	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75601819	A	A	75601819	1	1	84	0	1	0	0	0	0	0	0	0	8085	1624	56	5		5	KCNC2	12	75601819	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3545221	75601819	58250076	1249	87856											
OSBPL8	114882	broad.mit.edu	37	chr12	76769208	76769208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtatagtatatggctcaCgataaacagtttagtaatct	7	5	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76769208	A	A	76769208	1	1	84	0	1	0	0	0	0	0	0	0	11377	551	19	3		3	OSBPL8	12	76769208	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1167389	76769208	57082687	1250	87857											
NAV3	89795	broad.mit.edu	37	chr12	78444651	78444651	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacctggaggttgggccaggCatgtccgcgacttcaggcgg	17	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78444651	G	G	78444651	3	3	84	1	0	0	0	0	1	0	0	0	10279	710	25	4	2282	4	NAV3	12	78444651	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1675443	78444651	55407244	1251	87858											
MYF6	4618	broad.mit.edu	37	chr12	81102132	81102132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccctttctcgcccgcccCtcccgctccgtctctaatga	5	22	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81102132	A	A	81102132	1	1	84	0	1	0	0	0	0	0	0	0	10122	696	24	2		2	MYF6	12	81102132	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2657481	81102132	52749763	1252	87859											
MYF6	4618	broad.mit.edu	37	chr12	81102623	81102623	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttttttcgctcaggaGgagcaagtattgattcgtca	11	6	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81102623	A	A	81102623	3	1	84	1	0	0	0	0	1	0	0	0	10122	1001	35	4	623	4	MYF6	12	81102623	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	491	81102623	52749272	1253	87860											
CEP290	80184	broad.mit.edu	37	chr12	88482764	88482764	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccagcctgggaaacagatCaagatactgtctcttaaaaa	7	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88482764	A	A	88482764	1	1	84	0	1	0	0	0	0	0	0	0	3283	841	29	3		3	CEP290	12	88482764	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	7380141	88482764	45369131	1254	87861											
EEA1	8411	broad.mit.edu	37	chr12	93226317	93226317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcactttggagttgtaaccCatgctgctccttttcttctc	6	12	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93226317	A	A	93226317	3	1	84	1	0	0	0	0	1	0	0	0	4961	594	21	2	3086	2	EEA1	12	93226317	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4743553	93226317	40625578	1255	87862											
NR1H4	9971	broad.mit.edu	37	chr12	100926438	100926438	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaatctcttaaggaggcaGatgtcaggtaactcatcacg	9	8	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100926438	C	C	100926438	1	2	84	0	1	0	0	0	0	0	0	0	10714	957	33	4		4	NR1H4	12	100926438	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7700121	100926438	32925457	1256	87863											
ANO4	121601	broad.mit.edu	37	chr12	101413952	101413952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtataacaaactacatttGgcatttgggaattacagact	7	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101413952	A	A	101413952	1	1	84	0	1	0	0	0	0	0	0	0	699	1363	47	4		4	ANO4	12	101413952	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	487514	101413952	32437943	1257	87864											
NUAK1	9891	broad.mit.edu	37	chr12	106461547	106461547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcggtgtcagcctgcagcCctgtggaacggtggtgccag	15	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106461547	A	A	106461547	3	1	84	1	0	0	0	0	1	0	0	0	10807	623	22	2	970	2	NUAK1	12	106461547	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5047595	106461547	27390348	1258	87865											
WSCD2	9671	broad.mit.edu	37	chr12	108634061	108634061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggcccagaagagagtgGggtgggcttcttgcttcccc	16	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108634061	T	T	108634061	1	4	84	0	1	0	0	0	0	0	0	0	17534	1247	43	2		2	WSCD2	12	108634061	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2172514	108634061	25217834	1259	87866											
CCDC63	160762	broad.mit.edu	37	chr12	111345221	111345221	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcggagtaaggaagtgcgcGgagacagcctgcctgagaag	16	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111345221	A	A	111345221	3	1	84	1	0	0	0	0	1	0	0	0	2862	1117	39	4	1675	4	CCDC63	12	111345221	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2711160	111345221	22506674	1260	87867											
OAS3	4940	broad.mit.edu	37	chr12	113403719	113403719	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggagcggcagttcgaggtCaagtttgaagtctccaaatg	13	8	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113403719	G	G	113403719	2	3	84	1	0	0	0	0	0	0	0	1	10896	813	29	4		4	OAS3	12	113403719	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2058498	113403719	20448176	1261	87868											
DTX1	1840	broad.mit.edu	37	chr12	113515191	113515191	+	Intron	DEL	C	-	-													tccagccgcgcagaccaacgCccgctgtgctgacgcctcct							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113515191	-	-	113515191	6	5	84	0	1	1	0	1	0	0	0	0	4833	754	26	0		0	DTX1	12	113515191	Intron	DEL	C	TCGA-17-Z055-01A-01W-0747-08	111472	113515191	20336704	1262	87869											
KSR2	283455	broad.mit.edu	37	chr12	117962723	117962723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaccacgttctcatgcCgtgtctgcctgtaggccatc	9	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117962723	A	A	117962723	3	1	84	1	0	0	0	0	1	0	0	0	8654	652	23	1	727	1	KSR2	12	117962723	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4447532	117962723	15889172	1263	87870											
SRRM4	84530	broad.mit.edu	37	chr12	119559865	119559865	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcaattaattgaccattTcttgtttagctcctctagcc	4	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119559865	A	A	119559865	1	1	84	0	1	0	0	0	0	0	0	0	15289	1798	62	5		5	SRRM4	12	119559865	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1597142	119559865	14292030	1264	87871											
GCN1L1	10985	broad.mit.edu	37	chr12	120572172	120572172	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccactttggcccctgctcCctgaatcacaaacctcaggg	7	16	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120572172	A	A	120572172	4	1	84	1	0	0	0	0	0	1	0	0	6361	632	22	2	799	2	GCN1L1	12	120572172	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1012307	120572172	13279723	1265	87872											
HNF1A	6927	broad.mit.edu	37	chr12	121434482	121434482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggtcatgaccatcgggCctggtgagcctgcctccctg	14	14	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121434482	A	A	121434482	3	1	84	1	0	0	0	0	1	0	0	0	7318	739	26	3	1268	3	HNF1A	12	121434482	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	862310	121434482	12417413	1266	87873											
TCTN2	79867	broad.mit.edu	37	chr12	124181093	124181093	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggcaaattggtgttagaAgtattaccatattttgaatc	8	4	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124181093	C	C	124181093	1	2	84	0	1	0	0	0	0	0	0	0	15845	87	3	5		5	TCTN2	12	124181093	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2746611	124181093	9670802	1267	87874											
DNAH10	196385	broad.mit.edu	37	chr12	124350561	124350561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggaatggtttatgtggatCctaaaaacttgaaatatcga	10	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124350561	A	A	124350561	3	1	84	1	0	0	0	0	1	0	0	0	4638	855	30	3	6912	3	DNAH10	12	124350561	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	169468	124350561	9501334	1268	87875											
TMEM132B	114795	broad.mit.edu	37	chr12	126138332	126138332	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagtgaaccttgtcagaaGaccaagaggaagagtgttct	11	6	2	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126138332	T	T	126138332	3	4	84	1	0	0	0	0	1	0	0	0	16169	933	33	3	2347	3	TMEM132B	12	126138332	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1787771	126138332	7713563	1269	87876											
RIMBP2	23504	broad.mit.edu	37	chr12	130934836	130934836	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccatctgtgaaaaaggcaAtgggtgtgtgggttattgaa	13	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130934836	G	G	130934836	1	3	84	0	1	0	0	0	0	0	0	0	13472	116	4	5		5	RIMBP2	12	130934836	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4796504	130934836	2917059	1270	87877											
GPR133	283383	broad.mit.edu	37	chr12	131471658	131471658	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcccctattggactcatgTcctatttacatggaaatcca	7	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131471658	C	C	131471658	3	2	84	1	0	0	0	0	1	0	0	0	6708	1667	58	5	531	5	GPR133	12	131471658	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	536822	131471658	2380237	1271	87878											
GOLGA3	2802	broad.mit.edu	37	chr12	133381374	133381374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcctctggtactgctcctCggccacctgcaagtcgttgt	10	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133381374	T	T	133381374	3	4	84	1	0	0	0	0	1	0	0	0	6618	893	31	4	3181	4	GOLGA3	12	133381374	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1909716	133381374	470521	1272	87879											
TUBA3C	7278	broad.mit.edu	37	chr13	19751382	19751383	+	Missense_Mutation	DNP	GG	AT	AT													tccgtcaagtccacattcagGgccccgtcaaatcgcaggga							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	19751383	AT	AT	19751382	3	1	84	1	0	0	0	0	1	0	0	0	16872	1219	43	4	619	4	TUBA3C	13	19751382	Missense_Mutation	DNP	GG	TCGA-17-Z055-01A-01W-0747-08		19751382	95418496	1273	87880											
PSPC1	55269	broad.mit.edu	37	chr13	20333521	20333521	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagccatcttcatcatcaaActgctccatgggttccacaa	5	14	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20333521	G	G	20333521	3	3	84	1	0	0	0	0	1	0	0	0	12822	43	2	5	887	5	PSPC1	13	20333521	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	582139	20333521	94836357	1274	87881											
LATS2	26524	broad.mit.edu	37	chr13	21555562	21555562	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactcagctcacgtctgaagGgaaggagacctcctgcgggg	15	11	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21555562	A	A	21555562	1	1	84	0	1	0	0	0	0	0	0	0	8719	1247	43	4		4	LATS2	13	21555562	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1222041	21555562	93614316	1275	87882											
PAN3	255967	broad.mit.edu	37	chr13	28789054	28789054	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaagaatgggcaggctggcGaccatgcccttctggcttac	12	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28789054	T	T	28789054	1	4	84	0	1	0	0	0	0	0	0	0	11509	1073	37	3		3	PAN3	13	28789054	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7233492	28789054	86380824	1276	87883											
FLT1	2321	broad.mit.edu	37	chr13	28886159	28886159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgcttgaagcaaatcacCtagtttttccacaagttctg	6	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28886159	A	A	28886159	3	1	84	1	0	0	0	0	1	0	0	0	5999	681	24	2	573	2	FLT1	13	28886159	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	97105	28886159	86283719	1277	87884											
HSPH1	10808	broad.mit.edu	37	chr13	31733093	31733093	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacataaatgtcctacccaTtaggggatagggaacaagca	9	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31733093	A	A	31733093	1	1	84	0	1	0	0	0	0	0	0	0	7501	1508	52	5		5	HSPH1	13	31733093	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2846934	31733093	83436785	1278	87885											
FRY	10129	broad.mit.edu	37	chr13	32839660	32839660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttccatcaatgaactccCagcagcttttgaatgcagcg	8	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32839660	A	A	32839660	3	1	84	1	0	0	0	0	1	0	0	0	6123	594	21	2	8067	2	FRY	13	32839660	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1106567	32839660	82330218	1279	87886											
STOML3	161003	broad.mit.edu	37	chr13	39564834	39564834	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctctttatcttgcttctCaggtgaagacaccctagaat	6	10	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39564834	A	A	39564834	4	1	84	1	0	0	0	0	0	1	0	0	15433	835	29	3	907	3	STOML3	13	39564834	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6725174	39564834	75605044	1280	87887											
KIAA0564	23078	broad.mit.edu	37	chr13	42161647	42161647	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcttagttcatgtcattaCctggaacttctcctcatagt	5	10	5	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42161647	G	G	42161647	5	3	84	1	0	0	0	0	0	0	1	0	8255	521	18	4	461	4	KIAA0564	13	42161647	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2596813	42161647	73008231	1281	87888											
RCBTB1	55213	broad.mit.edu	37	chr13	50129684	50129684	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaacagccatggatgaagtCtgaccacaggcaatgccaac	10	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50129684	A	A	50129684	3	1	84	1	0	0	0	0	1	0	0	0	13279	912	32	3	1057	3	RCBTB1	13	50129684	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	7968037	50129684	65040194	1282	87889											
PCDH17	27253	broad.mit.edu	37	chr13	58209199	58209199	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagcttcaccggacaagGgactaatgcaagcgagaccc	10	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58209199	A	A	58209199	3	1	84	1	0	0	0	0	1	0	0	0	11606	1232	43	4	2521	4	PCDH17	13	58209199	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	8079515	58209199	56960679	1283	87890											
DIAPH3	81624	broad.mit.edu	37	chr13	60616851	60616851	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gattgctggtcaaagacactCggagagactccaggcatgtg	13	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60616851	T	T	60616851	3	4	84	1	0	0	0	0	1	0	0	0	4560	884	31	4	3098	4	DIAPH3	13	60616851	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2407652	60616851	54553027	1284	87891											
KLF12	11278	broad.mit.edu	37	chr13	74339045	74339045	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagtttcccgtaagacctAcaaatactcatattagactg	5	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74339045	G	G	74339045	1	3	84	0	1	0	0	0	0	0	0	0	8411	406	14	5		5	KLF12	13	74339045	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	13722194	74339045	40830833	1285	87892											
LMO7	4008	broad.mit.edu	37	chr13	76369502	76369502	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaataatttaaggttcacGgatattacctaatagatatt	5	4	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76369502	A	A	76369502	1	1	84	0	1	0	0	0	0	0	0	0	8929	1131	39	4		4	LMO7	13	76369502	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2030457	76369502	38800376	1286	87893											
LMO7	4008	broad.mit.edu	37	chr13	76414308	76414308	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggactgaattagtacacCgtagcatgcttaccatgatt	10	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76414308	T	T	76414308	1	4	84	0	1	0	0	0	0	0	0	0	8929	667	23	4		4	LMO7	13	76414308	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	44806	76414308	38755570	1287	87894											
HS6ST3	266722	broad.mit.edu	37	chr13	97226336	97226336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggcttcatggctgcattGggaccttctcagccatgaat	11	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97226336	T	T	97226336	1	4	84	0	1	0	0	0	0	0	0	0	7439	1363	47	2		2	HS6ST3	13	97226336	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	20812028	97226336	17943542	1288	87895											
PCCA	5095	broad.mit.edu	37	chr13	100807337	100807337	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagccattaagaaaaccagGgcccaagctgtgagtctgaa	11	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100807337	C	C	100807337	3	2	84	1	0	0	0	0	1	0	0	0	11598	1223	43	4	423	4	PCCA	13	100807337	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3581001	100807337	14362541	1289	87896											
ERCC5	2073	broad.mit.edu	37	chr13	103514784	103514784	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagctccaccgagaacagtGatgaaggacttaaagtgaga	11	8	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103514784	T	T	103514784	3	4	84	1	0	0	0	0	1	0	0	0	5258	1290	45	3	1315	3	ERCC5	13	103514784	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2707447	103514784	11655094	1290	87897											
FAM70B	348013	broad.mit.edu	37	chr13	114514724	114514724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagccctgcagccgcttcCcagttgcgccctcctctgcc	9	20	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114514724	A	A	114514724	3	1	84	1	0	0	0	0	1	0	0	0	5657	623	22	2	863	2	FAM70B	13	114514724	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	10999940	114514724	655154	1291	87898											
ZNF828	283489	broad.mit.edu	37	chr13	115089259	115089259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttattcctactttattGcagcagtattgaaagttttt	5	5	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115089259	T	T	115089259	1	4	84	0	1	0	0	0	0	0	0	0	18310	1334	46	3		3	ZNF828	13	115089259	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	574535	115089259	80619	1292	87899											
OR4K1	79544	broad.mit.edu	37	chr14	20403887	20403887	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgggactctctaattcctGgggacttcaacttttctttt	7	9	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20403887	C	C	20403887	3	2	84	1	0	0	0	0	1	0	0	0	11161	1357	47	4	64	4	OR4K1	14	20403887	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08		20403887	86945653	1293	87900											
OR4K1	79544	broad.mit.edu	37	chr14	20404642	20404642	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggacaaatttctttctGtgttctacactgtttgtact	7	8	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20404642	C	C	20404642	3	2	84	1	0	0	0	0	1	0	0	0	11161	1377	48	4	819	4	OR4K1	14	20404642	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	755	20404642	86944898	1294	87901											
OR4N5	390437	broad.mit.edu	37	chr14	20611948	20611948	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattcttcttggtctgacCcagtctcaagatgctcaact	6	12	6	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20611948	A	A	20611948	2	1	84	1	0	0	0	0	0	0	0	1	11173	610	22	2		2	OR4N5	14	20611948	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	207306	20611948	86737592	1295	87902											
OR4N5	390437	broad.mit.edu	37	chr14	20612474	20612474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgcaccaatacctttGtggtggagcttctgatggtc	12	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20612474	T	T	20612474	3	4	84	1	0	0	0	0	1	0	0	0	11173	1377	48	3	582	3	OR4N5	14	20612474	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	526	20612474	86737066	1296	87903											
TEP1	7011	broad.mit.edu	37	chr14	20842712	20842712	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatctacagagtcagaagtCagaggagtgggattatcagc	12	6	4	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20842712	G	G	20842712	1	3	84	0	1	0	0	0	0	0	0	0	15881	841	29	4		4	TEP1	14	20842712	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	230238	20842712	86506828	1297	87904											
APEX1	328	broad.mit.edu	37	chr14	20923978	20923978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggtttgtgaagaagtcGcaggaaccgtaggctttcgt	15	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20923978	T	T	20923978	1	4	84	0	1	0	0	0	0	0	0	0	771	1102	38	3		3	APEX1	14	20923978	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	81266	20923978	86425562	1298	87905											
RNASE10	338879	broad.mit.edu	37	chr14	20978831	20978831	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacccaaaccacagaaacGctggtgcttagcaacaaaga	9	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20978831	T	T	20978831	2	4	84	1	0	0	0	0	0	0	0	1	13511	1074	38	3		3	RNASE10	14	20978831	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	54853	20978831	86370709	1299	87906											
MYH7	4625	broad.mit.edu	37	chr14	23887135	23887135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacattgaggaggtatgggCttctgcagccctccccactg	13	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23887135	A	A	23887135	1	1	84	0	1	0	0	0	0	0	0	0	10133	812	28	3		3	MYH7	14	23887135	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2908304	23887135	83462405	1300	87907											
DHRS2	10202	broad.mit.edu	37	chr14	24114260	24114260	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcatccaccttgttcccCatggagcccactcccacctg	7	19	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24114260	T	T	24114260	1	4	84	0	1	0	0	0	0	0	0	0	4530	609	21	4		4	DHRS2	14	24114260	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	227125	24114260	83235280	1301	87908											
RNF31	55072	broad.mit.edu	37	chr14	24621044	24621044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcactccccagctggggccGggcagagctggcactgtcac	14	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24621044	T	T	24621044	3	4	84	1	0	0	0	0	1	0	0	0	13598	1116	39	1	2015	1	RNF31	14	24621044	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	506784	24621044	82728496	1302	87909											
IRF9	10379	broad.mit.edu	37	chr14	24633877	24633877	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgcgtggtgggcgaggcccAggtgcaaagcctggattgcc	18	11	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24633877	G	G	24633877	3	3	84	1	0	0	0	0	1	0	0	0	7907	188	7	5	726	5	IRF9	14	24633877	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	12833	24633877	82715663	1303	87910											
RIPK3	11035	broad.mit.edu	37	chr14	24808382	24808382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgggactgcagcagccCcgacaaggagccgttctcca	12	15	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24808382	A	A	24808382	3	1	84	1	0	0	0	0	1	0	0	0	13493	623	22	2	1278	2	RIPK3	14	24808382	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	174505	24808382	82541158	1304	87911											
NYNRIN	57523	broad.mit.edu	37	chr14	24878209	24878209	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccccattcagttgaaGctgccagggcagaatccttt	11	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24878209	A	A	24878209	2	1	84	1	0	0	0	0	0	0	0	1	10891	962	34	4		4	NYNRIN	14	24878209	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	69827	24878209	82471331	1305	87912											
CTSG	1511	broad.mit.edu	37	chr14	25042809	25042809	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggctctggcaacactgtGgagctggcctgtgtccccga	13	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25042809	T	T	25042809	1	4	84	0	1	0	0	0	0	0	0	0	4069	1363	47	2		2	CTSG	14	25042809	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	164600	25042809	82306731	1306	87913											
NPAS3	64067	broad.mit.edu	37	chr14	33836495	33836495	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacctttaaaacaaaaagaAgctttcttatattttactaa	3	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33836495	G	G	33836495	1	3	84	0	1	0	0	0	0	0	0	0	10659	87	3	5		5	NPAS3	14	33836495	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	8793686	33836495	73513045	1307	87914											
EGLN3	112399	broad.mit.edu	37	chr14	34400394	34400394	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgaacataacctgttcCatttcccggatagcaagcca	9	12	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34400394	A	A	34400394	4	1	84	1	0	0	0	0	0	1	0	0	5010	603	21	2	350	2	EGLN3	14	34400394	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	563899	34400394	72949146	1308	87915											
RALGAPA1	253959	broad.mit.edu	37	chr14	36231866	36231866	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtgttaacaggtgggatgTatgttctactcagtattttt	10	4	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36231866	C	C	36231866	1	2	84	0	1	0	0	0	0	0	0	0	13121	1653	57	5		5	RALGAPA1	14	36231866	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1831472	36231866	71117674	1309	87916											
CLEC14A	161198	broad.mit.edu	37	chr14	38724497	38724497	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtacctcccggggcagggaCacaacacatcgcccgagagt	13	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38724497	T	T	38724497	3	4	84	1	0	0	0	0	1	0	0	0	3531	478	17	4	745	4	CLEC14A	14	38724497	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2492631	38724497	68625043	1310	87917											
FSCB	84075	broad.mit.edu	37	chr14	44975660	44975660	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcagggcatcttccttTgactttgtagaagaactatc	8	8	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44975660	C	C	44975660	2	2	84	1	0	0	0	0	0	0	0	1	6126	1799	63	5		5	FSCB	14	44975660	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	6251163	44975660	62373880	1311	87918											
L2HGDH	79944	broad.mit.edu	37	chr14	50735776	50735776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcttacaaaaacggtcCttcaaaatttctcttatttc	3	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50735776	A	A	50735776	1	1	84	0	1	0	0	0	0	0	0	0	8662	696	24	2		2	L2HGDH	14	50735776	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5760116	50735776	56613764	1312	87919											
PYGL	5836	broad.mit.edu	37	chr14	51383717	51383717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacacagttcctgcaccaCgggtggagccaaacttggag	11	12	0	0	rs116465563	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51383717	A	A	51383717	3	1	84	1	0	0	0	0	1	0	0	0	12969	536	19	3	1633	3	PYGL	14	51383717	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	647941	51383717	55965823	1313	87920											
NID2	22795	broad.mit.edu	37	chr14	52494097	52494097	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agataagggcatccagagttTaggcctgcaaaggatgagcc	13	8	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52494097	C	C	52494097	1	2	84	0	1	0	0	0	0	0	0	0	10510	1769	61	5		5	NID2	14	52494097	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1110380	52494097	54855443	1314	87921											
KCNH5	27133	broad.mit.edu	37	chr14	63447533	63447533	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggaatccatttatccTgatgttttcaaaatatatga	6	6	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63447533	C	C	63447533	1	2	84	0	1	0	0	0	0	0	0	0	8105	1595	55	5		5	KCNH5	14	63447533	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	10953436	63447533	43902007	1315	87922											
MPP5	64398	broad.mit.edu	37	chr14	67769328	67769328	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaataattgatagcttttaGaaagctcttattagacttta	6	4	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67769328	T	T	67769328	1	4	84	0	1	0	0	0	0	0	0	0	9831	957	33	3		3	MPP5	14	67769328	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4321795	67769328	39580212	1316	87923											
MPP5	64398	broad.mit.edu	37	chr14	67799763	67799763	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgcagcaagattgaggatAagatggaaggcagcagtata	13	5	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67799763	T	T	67799763	1	4	84	0	1	0	0	0	0	0	0	0	9831	377	13	5		5	MPP5	14	67799763	3'UTR	SNP	A	TCGA-17-Z055-01A-01W-0747-08	30435	67799763	39549777	1317	87924											
PLEKHH1	57475	broad.mit.edu	37	chr14	68024190	68024190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgacatctgtactgctgGcccccagcttcctgagctgt	9	15	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68024190	T	T	68024190	1	4	84	0	1	0	0	0	0	0	0	0	12171	1218	42	3		3	PLEKHH1	14	68024190	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	224427	68024190	39325350	1318	87925											
DCAF5	8816	broad.mit.edu	37	chr14	69521853	69521853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtttgtcttggtagcgcCgcagagcagacagacgctgc	15	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69521853	A	A	69521853	3	1	84	1	0	0	0	0	1	0	0	0	4306	652	23	1	1282	1	DCAF5	14	69521853	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1497663	69521853	37827687	1319	87926											
SIPA1L1	26037	broad.mit.edu	37	chr14	72190515	72190515	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcctaggagtttttacCctcgccagggcgctactagc	11	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72190515	T	T	72190515	3	4	84	1	0	0	0	0	1	0	0	0	14442	623	22	4	4481	4	SIPA1L1	14	72190515	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2668662	72190515	35159025	1320	87927											
SIPA1L1	26037	broad.mit.edu	37	chr14	72201905	72201905	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcactggaaatactagacatGactgccaactagaccacttg	8	11	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72201905	A	A	72201905	1	1	84	0	1	0	0	0	0	0	0	0	14442	1305	45	4		4	SIPA1L1	14	72201905	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	11390	72201905	35147635	1321	87928											
RGS6	9628	broad.mit.edu	37	chr14	73007869	73007869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcccaaagggtggcagCccattgatattgacttgcct	9	13	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73007869	A	A	73007869	1	1	84	0	1	0	0	0	0	0	0	0	13418	754	26	3		3	RGS6	14	73007869	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	805964	73007869	34341671	1322	87929											
PSEN1	5663	broad.mit.edu	37	chr14	73683964	73683964	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atattaattgtaagtatacaCtaataagaatgtgtcagagc	7	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73683964	G	G	73683964	1	3	84	0	1	0	0	0	0	0	0	0	12756	580	20	4		4	PSEN1	14	73683964	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	676095	73683964	33665576	1323	87930											
PAPLN	89932	broad.mit.edu	37	chr14	73721202	73721202	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcaaggccgagcttctgctGacagccttgtccttgcagtg	13	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73721202	C	C	73721202	1	2	84	0	1	0	0	0	0	0	0	0	11522	1305	45	4		4	PAPLN	14	73721202	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	37238	73721202	33628338	1324	87931											
LTBP2	4053	broad.mit.edu	37	chr14	75078653	75078653	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccgcggcctcatggcgcGgggcggctggagagtggtgc	21	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75078653	T	T	75078653	1	4	84	0	1	0	0	0	0	0	0	0	9161	1131	39	1		1	LTBP2	14	75078653	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1357451	75078653	32270887	1325	87932											
LTBP2	4053	broad.mit.edu	37	chr14	75078677	75078677	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctggagagtggtgcgcgCgggcaccgcgaagagctttg	19	10	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75078677	A	A	75078677	1	1	84	0	1	0	0	0	0	0	0	0	9161	783	27	3		3	LTBP2	14	75078677	5'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	24	75078677	32270863	1326	87933											
KIAA0317	9870	broad.mit.edu	37	chr14	75134001	75134001	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgccaagttaagaatgggaGtctgaattgcaatcacttac	9	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75134001	C	C	75134001	1	2	84	0	1	0	0	0	0	0	0	0	8237	1044	36	4		4	KIAA0317	14	75134001	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	55324	75134001	32215539	1327	87934											
VIPAR	63894	broad.mit.edu	37	chr14	77902060	77902060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggctattgtgtacaggCagaaaatgaaaggcttttag	14	4	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77902060	A	A	77902060	1	1	84	0	1	0	0	0	0	0	0	0	17295	725	25	3		3	VIPAR	14	77902060	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2768059	77902060	29447480	1328	87935											
ISM2	145501	broad.mit.edu	37	chr14	77944654	77944655	+	Missense_Mutation	DNP	CC	AA	AA													actggggaggcccaaggtgtCcttgtcctcagtgcctttgg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	77944655	AA	AA	77944654	3	1	84	1	0	0	0	0	1	0	0	0	7931	855	30	3	594	3	ISM2	14	77944654	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	42594	77944654	29404886	1329	87936											
NRXN3	9369	broad.mit.edu	37	chr14	79181165	79181165	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagagcgagatcctggaccTggaaggagacatgtacctgg	16	8	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79181165	A	A	79181165	3	1	84	1	0	0	0	0	1	0	0	0	10762	1580	55	5	618	5	NRXN3	14	79181165	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1236511	79181165	28168375	1330	87937											
C14orf145	145508	broad.mit.edu	37	chr14	81380596	81380596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttcctttagctcacagcCccattccccaaaacacttca	2	16	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81380596	A	A	81380596	1	1	84	0	1	0	0	0	0	0	0	0	1762	638	22	2		2	C14orf145	14	81380596	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2199431	81380596	25968944	1331	87938											
STON2	85439	broad.mit.edu	37	chr14	81743375	81743375	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtggagccaaaacttgcCccccggttcactttggcttt	9	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81743375	A	A	81743375	2	1	84	1	0	0	0	0	0	0	0	1	15436	610	22	2		2	STON2	14	81743375	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	362779	81743375	25606165	1332	87939											
GALC	2581	broad.mit.edu	37	chr14	88420727	88420727	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtggaacaggcccaagatCaacattatgtgcttgtatta	9	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88420727	A	A	88420727	1	1	84	0	1	0	0	0	0	0	0	0	6263	841	29	3		3	GALC	14	88420727	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6677352	88420727	18928813	1333	87940											
GALC	2581	broad.mit.edu	37	chr14	88432009	88432009	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagaaacaccaagacaaCttgtgataaaaatgtaaatg	6	5	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88432009	G	G	88432009	1	3	84	0	1	0	0	0	0	0	0	0	6263	580	20	4		4	GALC	14	88432009	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	11282	88432009	18917531	1334	87941											
ZC3H14	79882	broad.mit.edu	37	chr14	89061133	89061133	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttccaccggagccagtGgacttaggttccataacaag	9	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89061133	A	A	89061133	1	1	84	0	1	0	0	0	0	0	0	0	17692	1335	47	4		4	ZC3H14	14	89061133	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	629124	89061133	18288407	1335	87942											
FOXN3	1112	broad.mit.edu	37	chr14	89747222	89747222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactgtcctatttgacacCaagcacaaaggagtgatgaa	9	8	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89747222	A	A	89747222	1	1	84	0	1	0	0	0	0	0	0	0	6081	609	21	2		2	FOXN3	14	89747222	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	686089	89747222	17602318	1336	87943											
C14orf102	55051	broad.mit.edu	37	chr14	90754624	90754624	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caattgcaaacaaccaaggcTccaagggtttggcagacctg	10	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90754624	A	A	90754624	3	1	84	1	0	0	0	0	1	0	0	0	1748	1551	54	5	415	5	C14orf102	14	90754624	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1007402	90754624	16594916	1337	87944											
C14orf159	80017	broad.mit.edu	37	chr14	91666348	91666348	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgctctgtcacccaggctgGagtgcagtggcacgatcttg	13	11	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91666348	T	T	91666348	1	4	84	0	1	0	0	0	0	0	0	0	1768	1189	41	3		3	C14orf159	14	91666348	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	911724	91666348	15683192	1338	87945											
LGMN	5641	broad.mit.edu	37	chr14	93179092	93179092	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgctcagttccatgtcagCggtgtctgagcaacctgctt	10	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93179092	G	G	93179092	1	3	84	0	1	0	0	0	0	0	0	0	8827	783	27	4		4	LGMN	14	93179092	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1512744	93179092	14170448	1339	87946											
C14orf109	26175	broad.mit.edu	37	chr14	93651864	93651864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttactgtcttaacttgggGgcttgacttgtagcaccccg	11	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93651864	T	T	93651864	1	4	84	0	1	0	0	0	0	0	0	0	1752	1247	43	2		2	C14orf109	14	93651864	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	472772	93651864	13697676	1340	87947											
COX8C	341947	broad.mit.edu	37	chr14	93814419	93814419	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttacgaccttcttaacaCcagctgcatatgtgctaggc	7	11	1	0	rs113042438		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93814419	G	G	93814419	3	3	84	1	0	0	0	0	1	0	0	0	3818	507	18	4	178	4	COX8C	14	93814419	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	162555	93814419	13535121	1341	87948											
KIAA1409	57578	broad.mit.edu	37	chr14	94100781	94100781	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaatagcaaatgaagggtCaattaaaattctatatggat	8	3	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94100781	A	A	94100781	1	1	84	0	1	0	0	0	0	0	0	0	8300	841	29	3		3	KIAA1409	14	94100781	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	286362	94100781	13248759	1342	87949											
KIAA1409	57578	broad.mit.edu	37	chr14	94120394	94120394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttcctttaatgacaccCtaagccccagccgaaactct	7	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120394	A	A	94120394	1	1	84	0	1	0	0	0	0	0	0	0	8300	696	24	2		2	KIAA1409	14	94120394	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	19613	94120394	13229146	1343	87950											
ASB2	51676	broad.mit.edu	37	chr14	94420762	94420762	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgcgagattcttcccttCcttgatcatggtcttcaagg	8	12	5	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94420762	T	T	94420762	3	4	84	1	0	0	0	0	1	0	0	0	1027	864	30	4	1556	4	ASB2	14	94420762	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	300368	94420762	12928778	1344	87951											
PPP4R4	57718	broad.mit.edu	37	chr14	94716613	94716613	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcattcaaaaattaattgaAcgtaagtaatcattgtctac	5	6	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94716613	T	T	94716613	3	4	84	1	0	0	0	0	1	0	0	0	12506	57	2	5	1847	5	PPP4R4	14	94716613	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	295851	94716613	12632927	1345	87952											
SERPINA10	51156	broad.mit.edu	37	chr14	94756290	94756290	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagtttgggaattttccccCgagtctctttgttaatgtaa	8	8	1	0	rs145668993		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94756290	G	G	94756290	3	3	84	1	0	0	0	0	1	0	0	0	14200	652	23	4	709	4	SERPINA10	14	94756290	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	39677	94756290	12593250	1346	87953											
DICER1	23405	broad.mit.edu	37	chr14	95570155	95570155	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttggcaaaagtctctgTtagctaaatcataactgcca	6	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95570155	C	C	95570155	3	2	84	1	0	0	0	0	1	0	0	0	4561	1725	60	5	2218	5	DICER1	14	95570155	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	813865	95570155	11779385	1347	87954											
DICER1	23405	broad.mit.edu	37	chr14	95579389	95579389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaatccactaatgacaCattttaaaagataacaatca	3	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95579389	A	A	95579389	1	1	84	0	1	0	0	0	0	0	0	0	4561	493	17	3		3	DICER1	14	95579389	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9234	95579389	11770151	1348	87955											
BDKRB2	624	broad.mit.edu	37	chr14	96706899	96706899	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accctagagaacatctttgtCctcagcgtcttctgcctgca	7	14	4	1	rs146975044		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96706899	A	A	96706899	2	1	84	1	0	0	0	0	0	0	0	1	1398	842	30	3		3	BDKRB2	14	96706899	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1127510	96706899	10642641	1349	87956											
ATG2B	55102	broad.mit.edu	37	chr14	96761801	96761801	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttggtatagtcttttcaActatacatatttaatacctt	3	7	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96761801	T	T	96761801	1	4	84	0	1	0	0	0	0	0	0	0	1098	58	2	5		5	ATG2B	14	96761801	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	54902	96761801	10587739	1350	87957											
PAPOLA	10914	broad.mit.edu	37	chr14	97008599	97008599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattatattgtacttctaGcaagtgcaccaacagaaaaa	7	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97008599	T	T	97008599	3	4	84	1	0	0	0	0	1	0	0	0	11523	971	34	3	1185	3	PAPOLA	14	97008599	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	246798	97008599	10340941	1351	87958											
C14orf177	283598	broad.mit.edu	37	chr14	99183605	99183605	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgtagaacagatgtcacaGatgtaactattcttgaaagg	9	6	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99183605	C	C	99183605	3	2	84	1	0	0	0	0	1	0	0	0	1773	933	33	4	378	4	C14orf177	14	99183605	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2175006	99183605	8165935	1352	87959											
SETD3	84193	broad.mit.edu	37	chr14	99871452	99871452	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaagacaaactactggagaGaagttttattaacacaccaa	6	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99871452	C	C	99871452	1	2	84	0	1	0	0	0	0	0	0	0	14245	957	33	4		4	SETD3	14	99871452	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	687847	99871452	7478088	1353	87960											
HHIPL1	84439	broad.mit.edu	37	chr14	100118680	100118680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcataagtgccgggggctGttccgtcacctgtcaactga	13	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100118680	T	T	100118680	2	4	84	1	0	0	0	0	0	0	0	1	7160	1364	48	3		3	HHIPL1	14	100118680	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	247228	100118680	7230860	1354	87961											
CYP46A1	10858	broad.mit.edu	37	chr14	100166319	100166319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgctccccaccccccaccCtctttcccgcatcacgtgtg	6	22	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100166319	A	A	100166319	1	1	84	0	1	0	0	0	0	0	0	0	4215	696	24	2		2	CYP46A1	14	100166319	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	47639	100166319	7183221	1355	87962											
EML1	2009	broad.mit.edu	37	chr14	100367277	100367277	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgaacagcaattgcccccAcatgtgcgcatctgggattc	9	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100367277	T	T	100367277	2	4	84	1	0	0	0	0	0	0	0	1	5138	146	6	5		5	EML1	14	100367277	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	200958	100367277	6982263	1356	87963											
WARS	7453	broad.mit.edu	37	chr14	100820854	100820854	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggccccggcccgtgtacaGataaaatggcttcttatttt	11	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100820854	C	C	100820854	3	2	84	1	0	0	0	0	1	0	0	0	17376	933	33	4	971	4	WARS	14	100820854	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	453577	100820854	6528686	1357	87964											
DLK1	8788	broad.mit.edu	37	chr14	101201246	101201246	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctaagcagcgttcccaCagccccctctagattcttgg	8	14	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101201246	A	A	101201246	1	1	84	0	1	0	0	0	0	0	0	0	4604	493	17	3		3	DLK1	14	101201246	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	380392	101201246	6148294	1358	87965											
OR4N4	283694	broad.mit.edu	37	chr15	22382907	22382907	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcctgctatgcaatgatGttggctctgtggcttggggg	16	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22382907	A	A	22382907	3	1	84	1	0	0	0	0	1	0	0	0	11172	1377	48	4	437	4	OR4N4	15	22382907	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08		22382907	80148485	1359	87966											
C15orf2	23742	broad.mit.edu	37	chr15	24922853	24922853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtgcagagcagaggcaCccgggaaagacatcagtcta	13	10	2	3	rs113030613	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922853	A	A	24922853	3	1	84	1	0	0	0	0	1	0	0	0	1797	506	18	3	1841	3	C15orf2	15	24922853	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2539946	24922853	77608539	1360	87967											
SNRPN	6638	broad.mit.edu	37	chr15	25230254	25230254	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagacctgggctggatttgTgatgagctgtgtttactgag	14	5	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25230254	G	G	25230254	1	3	84	0	1	0	0	0	0	0	0	0	14984	1711	59	5		5	SNRPN	15	25230254	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	307401	25230254	77301138	1361	87968											
ATP10A	57194	broad.mit.edu	37	chr15	25936934	25936934	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgctgacatcattggctccAtcacctagaaacagcacagg	8	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25936934	T	T	25936934	3	4	84	1	0	0	0	0	1	0	0	0	1120	214	8	5	1434	5	ATP10A	15	25936934	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	706680	25936934	76594458	1362	87969											
GABRA5	2558	broad.mit.edu	37	chr15	27185050	27185050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactctaggggactgatgtGcagtcatttgcttatttgca	11	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27185050	T	T	27185050	1	4	84	0	1	0	0	0	0	0	0	0	6224	1334	46	3		3	GABRA5	15	27185050	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1248116	27185050	75346342	1363	87970											
OCA2	4948	broad.mit.edu	37	chr15	28090145	28090145	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacccatatccatgctgttCtgcaatccctgcacacacga	6	15	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28090145	A	A	28090145	4	1	84	1	0	0	0	0	0	1	0	0	10910	922	32	3	132	3	OCA2	15	28090145	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	905095	28090145	74441247	1364	87971											
OCA2	4948	broad.mit.edu	37	chr15	28096535	28096535	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagccccttacctcccagGcaagcaccgaaggccagggc	11	17	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28096535	A	A	28096535	2	1	84	1	0	0	0	0	0	0	0	1	10910	1195	42	4		4	OCA2	15	28096535	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6390	28096535	74434857	1365	87972											
TJP1	7082	broad.mit.edu	37	chr15	30054591	30054591	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctcttgctgccaaactatCttgtgaaatttccttaacaa	4	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30054591	A	A	30054591	3	1	84	1	0	0	0	0	1	0	0	0	16052	913	32	3	4698	3	TJP1	15	30054591	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1958056	30054591	72476801	1366	87973											
TRPM1	4308	broad.mit.edu	37	chr15	31334149	31334149	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaatccccgctagacaCtaacttggaattgttatcca	5	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31334149	A	A	31334149	1	1	84	0	1	0	0	0	0	0	0	0	16710	580	20	3		3	TRPM1	15	31334149	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1279558	31334149	71197243	1367	87974											
OTUD7A	161725	broad.mit.edu	37	chr15	31818568	31818568	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaccccccgcccgtgccgcCattcttgctgaagtgtgtgc	10	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31818568	T	T	31818568	3	4	84	1	0	0	0	0	1	0	0	0	11412	594	21	4	1948	4	OTUD7A	15	31818568	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	484419	31818568	70712824	1368	87975											
RYR3	6263	broad.mit.edu	37	chr15	34150030	34150030	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtttatctctatactgTggtggctttcaacttcttcc	9	9	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34150030	C	C	34150030	3	2	84	1	0	0	0	0	1	0	0	0	13881	1696	59	5	14451	5	RYR3	15	34150030	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2331462	34150030	68381362	1369	87976											
GJD2	57369	broad.mit.edu	37	chr15	35045189	35045189	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgtgttctgcagcacCccattcacaatagcattttg	6	12	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35045189	T	T	35045189	2	4	84	1	0	0	0	0	0	0	0	1	6481	610	22	4		4	GJD2	15	35045189	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	895159	35045189	67486203	1370	87977											
EIF2AK4	440275	broad.mit.edu	37	chr15	40253982	40253982	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgttcaaatttatttttAaggcgagaacgtcagtattc	7	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40253982	T	T	40253982	1	4	84	0	1	0	0	0	0	0	0	0	5039	377	13	5		5	EIF2AK4	15	40253982	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	5208793	40253982	62277410	1371	87978											
PLCB2	5330	broad.mit.edu	37	chr15	40594423	40594423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcccgtcaaggcccagGgctggcatgctcagcaccag	13	15	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40594423	T	T	40594423	1	4	84	0	1	0	0	0	0	0	0	0	12123	1247	43	2		2	PLCB2	15	40594423	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	340441	40594423	61936969	1372	87979											
VPS18	57617	broad.mit.edu	37	chr15	41188135	41188135	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtcattccttacctgtaGggtatgtgaatgcccagctg	10	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41188135	T	T	41188135	5	4	84	1	0	0	0	0	0	0	1	0	17321	1014	35	2	97	2	VPS18	15	41188135	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	593712	41188135	61343257	1373	87980											
INO80	54617	broad.mit.edu	37	chr15	41350930	41350930	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcctgcaccaccagctgaTagctggtaataaccacatgg	8	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41350930	A	A	41350930	3	1	84	1	0	0	0	0	1	0	0	0	7816	1406	49	5	2862	5	INO80	15	41350930	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	162795	41350930	61180462	1374	87981											
RPAP1	26015	broad.mit.edu	37	chr15	41814074	41814074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctggcagtggctgcagcGctgcctgcagacagaaaagc	15	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41814074	T	T	41814074	3	4	84	1	0	0	0	0	1	0	0	0	13652	1087	38	3	1301	3	RPAP1	15	41814074	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	463144	41814074	60717318	1375	87982											
MAPKBP1	23005	broad.mit.edu	37	chr15	42109327	42109327	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agggtctgcccattgtggggGagtgttggacagcagctggg	19	7	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42109327	C	C	42109327	1	2	84	0	1	0	0	0	0	0	0	0	9384	1189	41	4		4	MAPKBP1	15	42109327	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	295253	42109327	60422065	1376	87983											
TGM7	116179	broad.mit.edu	37	chr15	43577168	43577168	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttactaaagagaaaaatataGagaatcgctgagttcatttc	7	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43577168	T	T	43577168	1	4	84	0	1	0	0	0	0	0	0	0	15958	957	33	3		3	TGM7	15	43577168	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1467841	43577168	58954224	1377	87984											
TRIM69	140691	broad.mit.edu	37	chr15	45052153	45052153	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgtggccctaattaaGtttttacagtctgggatagg	10	7	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45052153	C	C	45052153	1	2	84	0	1	0	0	0	0	0	0	0	16667	1044	36	4		4	TRIM69	15	45052153	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1474985	45052153	57479239	1378	87985											
SQRDL	58472	broad.mit.edu	37	chr15	45974832	45974832	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggggactgcaccaaccttCctacgtcaaagaccgctgct	9	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45974832	T	T	45974832	3	4	84	1	0	0	0	0	1	0	0	0	15247	855	30	4	1043	4	SQRDL	15	45974832	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	922679	45974832	56556560	1379	87986											
ATP8B4	79895	broad.mit.edu	37	chr15	50211081	50211081	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcttaatattggctagtgAtaaacttgtaactgtttcaa	7	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50211081	C	C	50211081	3	2	84	1	0	0	0	0	1	0	0	0	1201	333	12	5	1628	5	ATP8B4	15	50211081	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	4236249	50211081	52320311	1380	87987											
CYP19A1	1588	broad.mit.edu	37	chr15	51504904	51504904	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgcacaccagcaaccagGgccaaatatgttatgcttgg	9	10	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51504904	A	A	51504904	1	1	84	0	1	0	0	0	0	0	0	0	4181	1247	43	4		4	CYP19A1	15	51504904	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1293823	51504904	51026488	1381	87988											
LEO1	123169	broad.mit.edu	37	chr15	52258551	52258551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccactatgatgtgaagctCcctcgtcctcactgtcatct	6	14	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52258551	A	A	52258551	3	1	84	1	0	0	0	0	1	0	0	0	8798	855	30	3	1835	3	LEO1	15	52258551	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	753647	52258551	50272841	1382	87989											
MYO5C	55930	broad.mit.edu	37	chr15	52569414	52569415	+	Intron	DNP	CC	AA	AA													ctgtctagcatcaaacaaggCcaacacgagcctgctttggg							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52569415	AA	AA	52569414	1	1	84	0	1	0	0	0	0	0	0	0	10174	754	26	3		3	MYO5C	15	52569414	Intron	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	310863	52569414	49961978	1383	87990											
WDR72	256764	broad.mit.edu	37	chr15	53905934	53905934	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctctcatcttattatgtAtactttccattctgaaagaa	3	10	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53905934	T	T	53905934	3	4	84	1	0	0	0	0	1	0	0	0	17449	449	16	5	527	5	WDR72	15	53905934	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1336520	53905934	48625458	1384	87991											
VPS13C	54832	broad.mit.edu	37	chr15	62208222	62208222	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgagtttctgctgttccCtaaaaacaaacaaaaattcg	5	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62208222	A	A	62208222	5	1	84	1	0	0	0	0	0	0	1	0	17318	695	24	2	3334	2	VPS13C	15	62208222	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	8302288	62208222	40323170	1385	87992											
PLEKHO2	80301	broad.mit.edu	37	chr15	65158141	65158141	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccatcaagtccatcaaGgcccagccctgctgagaaat	7	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65158141	T	T	65158141	1	4	84	0	1	0	0	0	0	0	0	0	12180	1015	35	2		2	PLEKHO2	15	65158141	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2949919	65158141	37373251	1386	87993											
PIAS1	8554	broad.mit.edu	37	chr15	68445894	68445894	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtactatttacttacatAtgttgtttgttttctacttc	5	6	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68445894	G	G	68445894	1	3	84	0	1	0	0	0	0	0	0	0	11970	464	16	5		5	PIAS1	15	68445894	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3287753	68445894	34085498	1387	87994											
NOX5	79400	broad.mit.edu	37	chr15	69334988	69334988	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacctcctttcccctcccacTcttctctttctcagacacta	2	19	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69334988	C	C	69334988	1	2	84	0	1	0	0	0	0	0	0	0	10654	1566	54	5		5	NOX5	15	69334988	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	889094	69334988	33196404	1388	87995											
TLE3	7090	broad.mit.edu	37	chr15	70350727	70350727	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccaacgtgaagcccagagCcagacccttatgaagcttct	8	14	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70350727	G	G	70350727	1	3	84	0	1	0	0	0	0	0	0	0	16063	754	26	4		4	TLE3	15	70350727	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1015739	70350727	32180665	1389	87996											
NR2E3	10002	broad.mit.edu	37	chr15	72105900	72105900	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcgtgtcctgcaggaaactAtctctcggttccgggcattg	12	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72105900	G	G	72105900	3	3	84	1	0	0	0	0	1	0	0	0	10721	449	16	5	941	5	NR2E3	15	72105900	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1755173	72105900	30425492	1390	87997											
C15orf39	56905	broad.mit.edu	37	chr15	75499143	75499143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctcaagtccttggaccCagctggcccagcccctgggg	13	17	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75499143	A	A	75499143	3	1	84	1	0	0	0	0	1	0	0	0	1806	595	21	2	756	2	C15orf39	15	75499143	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3393243	75499143	27032249	1391	87998											
RASGRF1	5923	broad.mit.edu	37	chr15	79356752	79356752	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttcctgccctgggcaaGgagacatacctggcatgtgc	14	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79356752	T	T	79356752	1	4	84	0	1	0	0	0	0	0	0	0	13180	1015	35	2		2	RASGRF1	15	79356752	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3857609	79356752	23174640	1392	87999											
TMC3	342125	broad.mit.edu	37	chr15	81627322	81627322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctggattcgggctgcaGggagagggaggtgttgtgag	22	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81627322	T	T	81627322	1	4	84	0	1	0	0	0	0	0	0	0	16109	1015	35	2		2	TMC3	15	81627322	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2270570	81627322	20904070	1393	88000											
TMC3	342125	broad.mit.edu	37	chr15	81628884	81628884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccactgcactccagcctGggcgacagagcaagactctg	10	15	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81628884	T	T	81628884	1	4	84	0	1	0	0	0	0	0	0	0	16109	1363	47	2		2	TMC3	15	81628884	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1562	81628884	20902508	1394	88001											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84706472	84706472	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagactgcacagacacaactCactactgtatgtttgtaaaa	7	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84706472	A	A	84706472	3	1	84	1	0	0	0	0	1	0	0	0	276	826	29	3	5104	3	ADAMTSL3	15	84706472	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3077588	84706472	17824920	1395	88002											
KLHL25	64410	broad.mit.edu	37	chr15	86312943	86312943	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaagcgtgttgaggtgggcCagcacacagtccgggtggga	18	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86312943	T	T	86312943	2	4	84	1	0	0	0	0	0	0	0	1	8451	581	21	4		4	KLHL25	15	86312943	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1606471	86312943	16218449	1396	88003											
ACAN	176	broad.mit.edu	37	chr15	89386832	89386832	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacgtgcatgccaaccagaCgggctaccccgacccctcat	8	18	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89386832	T	T	89386832	3	4	84	1	0	0	0	0	1	0	0	0	117	536	19	4	1022	4	ACAN	15	89386832	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3073889	89386832	13144560	1397	88004											
MCTP2	55784	broad.mit.edu	37	chr15	94857544	94857544	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgacctgaatgcttctAtgacatctcaacattttgaa	7	9	2	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94857544	G	G	94857544	3	3	84	1	0	0	0	0	1	0	0	0	9494	449	16	5	505	5	MCTP2	15	94857544	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	5470712	94857544	7673848	1398	88005											
FAM169B	283777	broad.mit.edu	37	chr15	98982994	98982994	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctctcctgaagtcagaaaaGaatccacaggcattccaatt	6	12	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98982994	T	T	98982994	1	4	84	0	1	0	0	0	0	0	0	0	5533	957	33	3		3	FAM169B	15	98982994	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4125450	98982994	3548398	1399	88006											
IGF1R	3480	broad.mit.edu	37	chr15	99251358	99251358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaatgatgctgactgctGctttctctctgcctctctct	7	12	4	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99251358	T	T	99251358	1	4	84	0	1	0	0	0	0	0	0	0	7641	1334	46	3		3	IGF1R	15	99251358	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	268364	99251358	3280034	1400	88007											
ADAMTS17	170691	broad.mit.edu	37	chr15	100636507	100636507	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agactgcaatcaatagctgtAggcaaaggacacaaaacact	8	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100636507	G	G	100636507	1	3	84	0	1	0	0	0	0	0	0	0	262	435	15	5		5	ADAMTS17	15	100636507	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1385149	100636507	1894885	1401	88008											
PCSK6	5046	broad.mit.edu	37	chr15	101983678	101983678	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcatgtctatccagaatcAcattaaaatccagactccgc	4	13	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101983678	T	T	101983678	1	4	84	0	1	0	0	0	0	0	0	0	11698	174	6	5		5	PCSK6	15	101983678	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1347171	101983678	547714	1402	88009											
CASKIN1	57524	broad.mit.edu	37	chr16	2237242	2237242	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgtccagggctgtctggcTgtaggtgttcctcacgtggg	16	9	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2237242	A	A	2237242	3	1	84	1	0	0	0	0	1	0	0	0	2692	1580	55	5	3587	5	CASKIN1	16	2237242	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08		2237242	88117511	1403	88010											
KCTD5	54442	broad.mit.edu	37	chr16	2732829	2732829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacgggccagcccggagGgtcctggccttcccggcctg	14	18	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2732829	T	T	2732829	1	4	84	0	1	0	0	0	0	0	0	0	8182	1247	43	2		2	KCTD5	16	2732829	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	495587	2732829	87621924	1404	88011											
MEFV	4210	broad.mit.edu	37	chr16	3304325	3304325	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgggcgccttctcccctgtaGaaatggtgacctcaaggctt	11	13	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3304325	C	C	3304325	3	2	84	1	0	0	0	0	1	0	0	0	9552	942	33	4	1638	4	MEFV	16	3304325	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	571496	3304325	87050428	1405	88012											
ALG1	56052	broad.mit.edu	37	chr16	5128824	5128824	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggatgctgggagcgggctGgtgacgcgtctccgtgagcg	20	10	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5128824	T	T	5128824	2	4	84	1	0	0	0	0	0	0	0	1	510	1335	47	2		2	ALG1	16	5128824	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1824499	5128824	85225929	1406	88013											
A2BP1	54715	broad.mit.edu	37	chr16	7714899	7714899	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgggaaatgcactaatatGgatgtttctctttgtgtgtg	11	5	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7714899	A	A	7714899	1	1	84	0	1	0	0	0	0	0	0	0	3	1363	47	4		4	A2BP1	16	7714899	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2586075	7714899	82639854	1407	88014											
ABCC1	4363	broad.mit.edu	37	chr16	16170136	16170136	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagagtgttctgtgcatgtgGagtcgcacagctcagcctgt	14	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16170136	T	T	16170136	1	4	84	0	1	0	0	0	0	0	0	0	49	1189	41	3		3	ABCC1	16	16170136	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	8455237	16170136	74184617	1408	88015											
XYLT1	64131	broad.mit.edu	37	chr16	17211910	17211910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagaaaggtctaggatcCcctttgttagctttcatata	7	9	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17211910	A	A	17211910	1	1	84	0	1	0	0	0	0	0	0	0	17590	638	22	2		2	XYLT1	16	17211910	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1041774	17211910	73142843	1409	88016											
XYLT1	64131	broad.mit.edu	37	chr16	17292255	17292255	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacctggagcacttgccgaTgcaggtaattagagcgcttt	12	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17292255	C	C	17292255	3	2	84	1	0	0	0	0	1	0	0	0	17590	1464	51	5	1808	5	XYLT1	16	17292255	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	80345	17292255	73062498	1410	88017											
UMOD	7369	broad.mit.edu	37	chr16	20362075	20362075	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcctttctgctcttccCgctacttcaggtctagatag	6	15	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20362075	A	A	20362075	1	1	84	0	1	0	0	0	0	0	0	0	17105	667	23	1		1	UMOD	16	20362075	5'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3069820	20362075	69992678	1411	88018											
ACSM5	54988	broad.mit.edu	37	chr16	20439154	20439154	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctctgctgtgtcccaacCatctttcggctgcttgtgca	8	15	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20439154	T	T	20439154	2	4	84	1	0	0	0	0	0	0	0	1	187	581	21	4		4	ACSM5	16	20439154	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	77079	20439154	69915599	1412	88019											
ACSM2B	348158	broad.mit.edu	37	chr16	20556481	20556481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcacagtttctcaccaCatagccagagaagatgccta	8	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20556481	A	A	20556481	3	1	84	1	0	0	0	0	1	0	0	0	184	478	17	3	474	3	ACSM2B	16	20556481	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	117327	20556481	69798272	1413	88020											
LOC81691	81691	broad.mit.edu	37	chr16	20856477	20856477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacccccaggcacctccatGcctggctcagaggcttacca	8	17	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20856477	T	T	20856477	3	4	84	1	0	0	0	0	1	0	0	0	8977	1319	46	3	2104	3	LOC81691	16	20856477	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	299996	20856477	69498276	1414	88021											
DCUN1D3	123879	broad.mit.edu	37	chr16	20871399	20871399	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaaggaacatgttccaagTgtcccgggagatgcccttga	12	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20871399	A	A	20871399	3	1	84	1	0	0	0	0	1	0	0	0	4348	1696	59	5	194	5	DCUN1D3	16	20871399	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	14922	20871399	69483354	1415	88022											
DNAH3	55567	broad.mit.edu	37	chr16	20996668	20996668	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttctcgccagtcattgcCtgcgtagttcttggtgatct	9	11	5	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20996668	T	T	20996668	3	4	84	1	0	0	0	0	1	0	0	0	4643	681	24	4	5013	4	DNAH3	16	20996668	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	125269	20996668	69358085	1416	88023											
SCNN1B	6338	broad.mit.edu	37	chr16	23364420	23364420	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtccctgggcacatatcAagcaatgggccccacccagt	11	14	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23364420	T	T	23364420	1	4	84	0	1	0	0	0	0	0	0	0	14041	145	5	5		5	SCNN1B	16	23364420	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2367752	23364420	66990333	1417	88024											
PALB2	79728	broad.mit.edu	37	chr16	23637588	23637588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggtataaagtttttccCactgccaagcatccagagct	8	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23637588	A	A	23637588	3	1	84	1	0	0	0	0	1	0	0	0	11500	595	21	2	871	2	PALB2	16	23637588	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	273168	23637588	66717165	1418	88025											
HS3ST4	9951	broad.mit.edu	37	chr16	25704416	25704416	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccggacgtgcgggcggtGggcgtagagccgcacttctt	16	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25704416	A	A	25704416	2	1	84	1	0	0	0	0	0	0	0	1	7434	1335	47	4		4	HS3ST4	16	25704416	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2066828	25704416	64650337	1419	88026											
HS3ST4	9951	broad.mit.edu	37	chr16	26043824	26043824	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtattccaaactgtacagtCaccagaagtacacagttatc	6	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26043824	A	A	26043824	1	1	84	0	1	0	0	0	0	0	0	0	7434	841	29	3		3	HS3ST4	16	26043824	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	339408	26043824	64310929	1420	88027											
C16orf82	162083	broad.mit.edu	37	chr16	27078164	27078164	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcattgttctccctccCacacccgccttcacctcaca	4	20	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27078164	A	A	27078164	1	1	84	0	1	0	0	0	0	0	0	0	1852	609	21	2		2	C16orf82	16	27078164	5'Flank	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1034340	27078164	63276589	1421	88028											
GTF3C1	2975	broad.mit.edu	37	chr16	27519926	27519926	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctagttttcccacattcaTagccactcggatttcagctt	5	12	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27519926	C	C	27519926	3	2	84	1	0	0	0	0	1	0	0	0	6937	1406	49	5	5272	5	GTF3C1	16	27519926	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	441762	27519926	62834827	1422	88029											
XPO6	23214	broad.mit.edu	37	chr16	28180977	28180977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgctatctcagaaacagCgcaaacaactgctcaaagct	6	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28180977	A	A	28180977	1	1	84	0	1	0	0	0	0	0	0	0	17575	783	27	3		3	XPO6	16	28180977	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	661051	28180977	62173776	1423	88030											
IL27	246778	broad.mit.edu	37	chr16	28513378	28513378	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctccatgttggtccagcgGccctgggtccccagccctcc	10	19	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28513378	A	A	28513378	2	1	84	1	0	0	0	0	0	0	0	1	7750	1190	42	4		4	IL27	16	28513378	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	332401	28513378	61841375	1424	88031											
ATXN2L	11273	broad.mit.edu	37	chr16	28837215	28837215	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgcagagtaggaggagaatGaaataggctcattgaaggtg	15	3	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28837215	A	A	28837215	1	1	84	0	1	0	0	0	0	0	0	0	1216	1305	45	4		4	ATXN2L	16	28837215	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	323837	28837215	61517538	1425	88032											
DCTPP1	79077	broad.mit.edu	37	chr16	30435740	30435740	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcggcagatccacacggcaGcgggctgctaatgccaccag	13	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30435740	A	A	30435740	2	1	84	1	0	0	0	0	0	0	0	1	4345	958	34	4		4	DCTPP1	16	30435740	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1598525	30435740	59919013	1426	88033											
DNAJA2	10294	broad.mit.edu	37	chr16	46993386	46993386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattatggaggtacaccCtgcagcattatgttccttga	8	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46993386	A	A	46993386	1	1	84	0	1	0	0	0	0	0	0	0	4652	696	24	2		2	DNAJA2	16	46993386	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	16557646	46993386	43361367	1427	88034											
NETO2	81831	broad.mit.edu	37	chr16	47117783	47117783	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctggtacaaattagtaaGgtatttttaggtaaaacaga	8	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47117783	A	A	47117783	1	1	84	0	1	0	0	0	0	0	0	0	10435	1015	35	4		4	NETO2	16	47117783	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	124397	47117783	43236970	1428	88035											
ITFG1	81533	broad.mit.edu	37	chr16	47189792	47189792	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaaagtctccagcaatTagcagataatagatatgatt	6	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47189792	C	C	47189792	1	2	84	0	1	0	0	0	0	0	0	0	7939	1769	61	5		5	ITFG1	16	47189792	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	72009	47189792	43164961	1429	88036											
N4BP1	9683	broad.mit.edu	37	chr16	48581955	48581956	+	Missense_Mutation	DNP	TC	AA	AA													tctccaagagactgactcatTcacaaattctctgaaattat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	48581956	AA	AA	48581955	3	1	84	1	0	0	0	0	1	0	0	0	10203	1783	62	5	514	5	N4BP1	16	48581955	Missense_Mutation	DNP	TC	TCGA-17-Z055-01A-01W-0747-08	1392163	48581955	41772798	1430	88037											
IRX5	10265	broad.mit.edu	37	chr16	54966912	54966912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaggttgggggcagggGtccctgcctttgcgggcggg	21	10	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54966912	T	T	54966912	1	4	84	0	1	0	0	0	0	0	0	0	7917	1276	44	3		3	IRX5	16	54966912	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6384957	54966912	35387841	1431	88038											
CETP	1071	broad.mit.edu	37	chr16	57005229	57005229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcacctgctctgtctgccCcagatctgcaaagagatcaa	8	13	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57005229	A	A	57005229	1	1	84	0	1	0	0	0	0	0	0	0	3307	638	22	2		2	CETP	16	57005229	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2038317	57005229	33349524	1432	88039											
CX3CL1	6376	broad.mit.edu	37	chr16	57416300	57416300	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggagggcctgtgggcacgGagcttttccgagtgcctccc	15	12	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57416300	A	A	57416300	3	1	84	1	0	0	0	0	1	0	0	0	4107	1175	41	4	560	4	CX3CL1	16	57416300	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	411071	57416300	32938453	1433	88040											
GPR56	9289	broad.mit.edu	37	chr16	57685350	57685350	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccgacatgctgggagattAcatcttctctatggcaagcg	10	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57685350	T	T	57685350	3	4	84	1	0	0	0	0	1	0	0	0	6765	388	14	5	324	5	GPR56	16	57685350	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	269050	57685350	32669403	1434	88041											
CNGB1	1258	broad.mit.edu	37	chr16	57918246	57918246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagctcggtggagaccccGggggctcggggggcgtccgg	22	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57918246	T	T	57918246	3	4	84	1	0	0	0	0	1	0	0	0	3632	1116	39	1	181	1	CNGB1	16	57918246	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	232896	57918246	32436507	1435	88042											
PLEKHG4	25894	broad.mit.edu	37	chr16	67320198	67320198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcagtttgggatgtacGcgctctacagcaagaataag	14	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67320198	T	T	67320198	3	4	84	1	0	0	0	0	1	0	0	0	12166	1087	38	3	2518	3	PLEKHG4	16	67320198	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	9401952	67320198	23034555	1436	88043											
TMCO7	79613	broad.mit.edu	37	chr16	69074207	69074207	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcttccttcatcctcCtaggtaacagcttgcctgat	5	14	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69074207	G	G	69074207	1	3	84	0	1	0	0	0	0	0	0	0	16124	696	24	4		4	TMCO7	16	69074207	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1754009	69074207	21280546	1437	88044											
CIRH1A	84916	broad.mit.edu	37	chr16	69202673	69202673	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctacagtcagttctttcagGactagccctggatcctaagt	8	12	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69202673	T	T	69202673	1	4	84	0	1	0	0	0	0	0	0	0	3465	1189	41	3		3	CIRH1A	16	69202673	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	128466	69202673	21152080	1438	88045											
HYDIN	54768	broad.mit.edu	37	chr16	70841512	70841512	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccccttcagataataaaCccatttaactccagtctcac	3	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70841512	T	T	70841512	3	4	84	1	0	0	0	0	1	0	0	0	7537	507	18	4	32	4	HYDIN	16	70841512	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1638839	70841512	19513241	1439	88046											
HYDIN	54768	broad.mit.edu	37	chr16	70891626	70891626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaatgaggagagagctgaAgttgaggtgtgacttgttca	14	5	1	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70891626	T	T	70891626	3	4	84	1	0	0	0	0	1	0	0	0	7537	72	3	5	3148	5	HYDIN	16	70891626	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	50114	70891626	19463127	1440	88047											
CNTNAP4	85445	broad.mit.edu	37	chr16	76501257	76501257	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtttttatcaggttgtcctGacaaaagctttggatccaaa	8	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76501257	C	C	76501257	3	2	84	1	0	0	0	0	1	0	0	0	3681	1290	45	4	1543	4	CNTNAP4	16	76501257	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5609631	76501257	13853496	1441	88048											
VAT1L	57687	broad.mit.edu	37	chr16	77859097	77859097	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgttctctccttgagcctCtgtcatgaggtagcctccac	8	14	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77859097	T	T	77859097	1	4	84	0	1	0	0	0	0	0	0	0	17257	928	32	4		4	VAT1L	16	77859097	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1357840	77859097	12495656	1442	88049											
CDYL2	124359	broad.mit.edu	37	chr16	80646674	80646674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcacccaggcccagggccGgcccattgatggccaccacg	13	17	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80646674	T	T	80646674	3	4	84	1	0	0	0	0	1	0	0	0	3216	1116	39	1	465	1	CDYL2	16	80646674	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2787577	80646674	9708079	1443	88050											
PKD1L2	114780	broad.mit.edu	37	chr16	81224338	81224338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtgaacacagtgggaaCgggtatcaagctttggttgg	16	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81224338	A	A	81224338	1	1	84	0	1	0	0	0	0	0	0	0	12060	551	19	3		3	PKD1L2	16	81224338	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	577664	81224338	9130415	1444	88051											
HSD17B2	3294	broad.mit.edu	37	chr16	82104622	82104622	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcttcttatgactgactAcaaacaatgcatggccgtga	8	10	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82104622	G	G	82104622	3	3	84	1	0	0	0	0	1	0	0	0	7451	391	14	5	564	5	HSD17B2	16	82104622	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	880284	82104622	8250131	1445	88052											
FBXO31	79791	broad.mit.edu	37	chr16	87380904	87380904	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttagacccagcgtgcCgcagggagcccaggaacccc	13	15	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87380904	T	T	87380904	1	4	84	0	1	0	0	0	0	0	0	0	5798	667	23	4		4	FBXO31	16	87380904	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5276282	87380904	2973849	1446	88053											
ACSF3	197322	broad.mit.edu	37	chr16	89211619	89211619	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaccagagccccttttcctCaggggacaccgtggtgttta	10	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89211619	T	T	89211619	1	4	84	0	1	0	0	0	0	0	0	0	176	841	29	4		4	ACSF3	16	89211619	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1830715	89211619	1143134	1447	88054											
RPA1	6117	broad.mit.edu	37	chr17	1756318	1756318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcatcacaatgatcatcgGggaaagcattttgagtagct	10	7	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1756318	T	T	1756318	1	4	84	0	1	0	0	0	0	0	0	0	13647	1247	43	2		2	RPA1	17	1756318	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08		1756318	79438892	1448	88055											
P2RX1	5023	broad.mit.edu	37	chr17	3802969	3802969	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatttttctcttcgtacagCccatggaactcatagatggg	9	9	2	2	rs12602000		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3802969	G	G	3802969	2	3	84	1	0	0	0	0	0	0	0	1	11433	726	26	4		4	P2RX1	17	3802969	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2046651	3802969	77392241	1449	88056											
MYBBP1A	10514	broad.mit.edu	37	chr17	4451565	4451565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccaccctgggtctggcCcggtgcctgcttgaactgcg	13	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4451565	A	A	4451565	3	1	84	1	0	0	0	0	1	0	0	0	10102	623	22	2	2489	2	MYBBP1A	17	4451565	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	648596	4451565	76743645	1450	88057											
TP53	7157	broad.mit.edu	37	chr17	7577507	7577507	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggctcctgacctggagtcTtccagtgtgatgatggtgag	15	8	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577507	A	A	7577507	3	1	84	1	0	0	0	0	1	0	0	0	16505	1606	56	5	516	5	TP53	17	7577507	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3125942	7577507	73617703	1451	88058											
TP53	7157	broad.mit.edu	37	chr17	7578616	7578616	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtgaacagataaagcaacTggaagacggcagcaaagaaa	11	6	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578616	A	A	7578616	1	1	84	0	1	0	0	0	0	0	0	0	16505	1595	55	5		5	TP53	17	7578616	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1109	7578616	73616594	1452	88059											
CYB5D1	124637	broad.mit.edu	37	chr17	7761775	7761775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccaggatatcagccactGgtttgatccaaagaccagag	11	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7761775	T	T	7761775	3	4	84	1	0	0	0	0	1	0	0	0	4157	1357	47	2	221	2	CYB5D1	17	7761775	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	183159	7761775	73433435	1453	88060											
PER1	5187	broad.mit.edu	37	chr17	8054080	8054080	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggccaccacggatgcaCgagggggcctggaggcttgg	19	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8054080	A	A	8054080	1	1	84	0	1	0	0	0	0	0	0	0	11823	551	19	3		3	PER1	17	8054080	5'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	292305	8054080	73141130	1454	88061											
AURKB	9212	broad.mit.edu	37	chr17	8110763	8110763	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttctctctgcttcctcatCccatcctgtcctccgcccca	3	21	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8110763	T	T	8110763	1	4	84	0	1	0	0	0	0	0	0	0	1228	870	30	4		4	AURKB	17	8110763	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	56683	8110763	73084447	1455	88062											
DHRS7C	201140	broad.mit.edu	37	chr17	9676069	9676069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccaggggccccagcttcCctctgaagtctcacatttcc	7	19	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9676069	A	A	9676069	1	1	84	0	1	0	0	0	0	0	0	0	4537	638	22	2		2	DHRS7C	17	9676069	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1565306	9676069	71519141	1456	88063											
MYH8	4626	broad.mit.edu	37	chr17	10303001	10303001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttccctacaggatatgtaGcaatgaaagatgagacattg	10	6	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10303001	T	T	10303001	1	4	84	0	1	0	0	0	0	0	0	0	10135	986	34	3		3	MYH8	17	10303001	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	626932	10303001	70892209	1457	88064											
MYH8	4626	broad.mit.edu	37	chr17	10303778	10303778	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcagctcactcttctcctTctccagcttctgtttgaccc	4	17	6	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10303778	C	C	10303778	3	2	84	1	0	0	0	0	1	0	0	0	10135	1792	62	5	2205	5	MYH8	17	10303778	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	777	10303778	70891432	1458	88065											
MYH1	4619	broad.mit.edu	37	chr17	10399212	10399212	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatagtaccacgatttcagCaagaatgtcattttcatacc	5	9	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10399212	G	G	10399212	1	3	84	0	1	0	0	0	0	0	0	0	10123	725	25	4		4	MYH1	17	10399212	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	95434	10399212	70795998	1459	88066											
MYH3	4621	broad.mit.edu	37	chr17	10543699	10543699	+	Frame_Shift_Del	DEL	A	-	-													acgcatgaggaaccctctgcAcacagcttgtgtccgggtga							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10543699	-	-	10543699	7	5	84	1	0	1	0	1	0	0	0	0	10130	159	6	0	3529	0	MYH3	17	10543699	Frame_Shift_Del	DEL	A	TCGA-17-Z055-01A-01W-0747-08	144487	10543699	70651511	1460	88067											
DNAH9	1770	broad.mit.edu	37	chr17	11511387	11511387	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccttttccagatgaggatTtctttaagttctcagaattg	8	7	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11511387	A	A	11511387	1	1	84	0	1	0	0	0	0	0	0	0	4648	1856	64	5		5	DNAH9	17	11511387	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	967688	11511387	69683823	1461	88068											
DNAH9	1770	broad.mit.edu	37	chr17	11572432	11572432	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcacaactgagtctagccaTcccagagctagttttctatc	7	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11572432	A	A	11572432	3	1	84	1	0	0	0	0	1	0	0	0	4648	1435	50	5	2845	5	DNAH9	17	11572432	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	61045	11572432	69622778	1462	88069											
DNAH9	1770	broad.mit.edu	37	chr17	11607656	11607656	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcaaaacccttatcaccaTgctgattggccagctctcca	6	15	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11607656	G	G	11607656	3	3	84	1	0	0	0	0	1	0	0	0	4648	1464	51	5	5386	5	DNAH9	17	11607656	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	35224	11607656	69587554	1463	88070											
MPRIP	23164	broad.mit.edu	37	chr17	16981181	16981181	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcttgtgcctcgggtccctCttttcctgccacctgcccca	7	18	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16981181	T	T	16981181	1	4	84	0	1	0	0	0	0	0	0	0	9837	928	32	4		4	MPRIP	17	16981181	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5373525	16981181	64214029	1464	88071											
ALDH3A2	224	broad.mit.edu	37	chr17	19555964	19555964	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaagaatttcttgactcAtctccaacatatgtgtttac	6	8	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19555964	C	C	19555964	1	2	84	0	1	0	0	0	0	0	0	0	498	232	8	5		5	ALDH3A2	17	19555964	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2574783	19555964	61639246	1465	88072											
CPD	1362	broad.mit.edu	37	chr17	28747824	28747824	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagggtagaattattttcCttctgagagtaaacttattt	9	4	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28747824	G	G	28747824	1	3	84	0	1	0	0	0	0	0	0	0	3830	696	24	4		4	CPD	17	28747824	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9191860	28747824	52447386	1466	88073											
NF1	4763	broad.mit.edu	37	chr17	29527461	29527461	+	Nonsense_Mutation	SNP	C	T	T													agttatttctggacagtctaCgaaaagctcttgctggccat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29527461	T	T	29527461	4	4	84	1	0	0	0	0	0	1	0	0	10451	528	19	4	944	4	NF1	17	29527461	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	779637	29527461	51667749	1467	88074	394	2									
NF1	4763	broad.mit.edu	37	chr17	29527470	29527470	+	Missense_Mutation	SNP	C	T	T													tggacagtctacgaaaagctCttgctggccatggaggaagt							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29527470	T	T	29527470	3	4	84	1	0	0	0	0	1	0	0	0	10451	913	32	4	953	4	NF1	17	29527470	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	9	29527470	51667740	1468	88075	394	2									
NF1	4763	broad.mit.edu	37	chr17	29684520	29684520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttagctttgagacagtaGgtttaatgagggttaagatt	11	2	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29684520	T	T	29684520	1	4	84	0	1	0	0	0	0	0	0	0	10451	1015	35	2		2	NF1	17	29684520	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	157050	29684520	51510690	1469	88076											
CCL13	6357	broad.mit.edu	37	chr17	32684527	32684527	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatctacttgctgcttcaCatttagcagtaagaagatct	6	11	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32684527	T	T	32684527	3	4	84	1	0	0	0	0	1	0	0	0	2912	478	17	4	116	4	CCL13	17	32684527	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3000007	32684527	48510683	1470	88077											
TAF15	8148	broad.mit.edu	37	chr17	34147178	34147178	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatttcagagctattctgGctatgggcaaacgactgatt	9	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34147178	T	T	34147178	3	4	84	1	0	0	0	0	1	0	0	0	15637	1203	42	3	124	3	TAF15	17	34147178	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1462651	34147178	47048032	1471	88078											
RARA	5914	broad.mit.edu	37	chr17	38506137	38506137	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaaccgctgccagtactgCcgactgcagaagtgctttga	12	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38506137	T	T	38506137	2	4	84	1	0	0	0	0	0	0	0	1	13160	747	26	4		4	RARA	17	38506137	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4358959	38506137	42689073	1472	88079											
KRT33A	3883	broad.mit.edu	37	chr17	39503366	39503366	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttggtttccaccagggcctCatactgactcctggtctcat	9	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39503366	T	T	39503366	3	4	84	1	0	0	0	0	1	0	0	0	8540	835	29	4	533	4	KRT33A	17	39503366	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	997229	39503366	41691844	1473	88080											
KRT32	3882	broad.mit.edu	37	chr17	39622168	39622168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagctgccgcatggccaGctctgcctcgtacctgcaca	9	18	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39622168	T	T	39622168	3	4	84	1	0	0	0	0	1	0	0	0	8539	962	34	3	801	3	KRT32	17	39622168	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	118802	39622168	41573042	1474	88081											
GHDC	84514	broad.mit.edu	37	chr17	40344424	40344424	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggcccctgctctagggcctCccggagctcagctgcccgtt	12	17	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40344424	G	G	40344424	3	3	84	1	0	0	0	0	1	0	0	0	6433	864	30	4	981	4	GHDC	17	40344424	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	722256	40344424	40850786	1475	88082											
STAT3	6774	broad.mit.edu	37	chr17	40485818	40485818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggctcacgcgccacggCcatgaccagaagtcagcccg	13	15	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40485818	A	A	40485818	1	1	84	0	1	0	0	0	0	0	0	0	15384	754	26	3		3	STAT3	17	40485818	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	141394	40485818	40709392	1476	88083											
COASY	80347	broad.mit.edu	37	chr17	40716806	40716806	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaagagctcaatagctcAgcgactgaagggcctggggg	17	8	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40716806	C	C	40716806	3	2	84	1	0	0	0	0	1	0	0	0	3684	188	7	5	1232	5	COASY	17	40716806	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	230988	40716806	40478404	1477	88084											
AARSD1	80755	broad.mit.edu	37	chr17	41105823	41105823	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggacacagacatgagacCcaggttggagtggtggctgt	15	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41105823	G	G	41105823	1	3	84	0	1	0	0	0	0	0	0	0	21	638	22	4		4	AARSD1	17	41105823	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	389017	41105823	40089387	1478	88085											
SLC4A1	6521	broad.mit.edu	37	chr17	42328846	42328846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaacagaagcaagatgcGgtcaaagagctggatgccgc	13	9	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42328846	T	T	42328846	3	4	84	1	0	0	0	0	1	0	0	0	14764	1116	39	1	325	1	SLC4A1	17	42328846	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1223023	42328846	38866364	1479	88086											
C17orf46	124783	broad.mit.edu	37	chr17	43332557	43332557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgccctttgatggtggccCtcttgatccccggcttgctg	11	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43332557	T	T	43332557	3	4	84	1	0	0	0	0	1	0	0	0	1873	681	24	4	170	4	C17orf46	17	43332557	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1003711	43332557	37862653	1480	88087											
CRHR1	1394	broad.mit.edu	37	chr17	43884541	43884541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtatcccagagcctgcaCacagaaccatgccctaaggc	9	15	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43884541	A	A	43884541	1	1	84	0	1	0	0	0	0	0	0	0	3903	493	17	3		3	CRHR1	17	43884541	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	551984	43884541	37310669	1481	88088											
HOXB3	3213	broad.mit.edu	37	chr17	46629838	46629838	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaggtggctttctgcatcGctgggtgaggcctgggcagt	17	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46629838	T	T	46629838	1	4	84	0	1	0	0	0	0	0	0	0	7369	1102	38	3		3	HOXB3	17	46629838	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2745297	46629838	34565372	1482	88089											
IGF2BP1	10642	broad.mit.edu	37	chr17	47109330	47109330	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattccaaccgggagcagacCaggcagtgagtgggctggga	16	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47109330	G	G	47109330	2	3	84	1	0	0	0	0	0	0	0	1	7643	581	21	4		4	IGF2BP1	17	47109330	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	479492	47109330	34085880	1483	88090											
IGF2BP1	10642	broad.mit.edu	37	chr17	47121290	47121290	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggtttctgggccatgctActtgggccccctggtaacaa	13	11	1	0	rs146885453	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47121290	G	G	47121290	1	3	84	0	1	0	0	0	0	0	0	0	7643	406	14	5		5	IGF2BP1	17	47121290	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	11960	47121290	34073920	1484	88091											
IGF2BP1	10642	broad.mit.edu	37	chr17	47123148	47123148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcccgcctaggatggggaGggcctgtgggccagaaaata	16	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47123148	T	T	47123148	1	4	84	0	1	0	0	0	0	0	0	0	7643	1015	35	2		2	IGF2BP1	17	47123148	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1858	47123148	34072062	1485	88092											
NGFR	4804	broad.mit.edu	37	chr17	47587730	47587730	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggttagagctaaaagggagGagtgggggaagtgggtcctc	20	4	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47587730	A	A	47587730	1	1	84	0	1	0	0	0	0	0	0	0	10491	1189	41	4		4	NGFR	17	47587730	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	464582	47587730	33607480	1486	88093											
NGFR	4804	broad.mit.edu	37	chr17	47587758	47587758	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtgggtcctcactcctgTggccttttctcccagagatc	10	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47587758	C	C	47587758	1	2	84	0	1	0	0	0	0	0	0	0	10491	1711	59	5		5	NGFR	17	47587758	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	28	47587758	33607452	1487	88094											
DLX4	1748	broad.mit.edu	37	chr17	48051292	48051292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcagatgtcctggcttcGcctcagatgatgtgaatctg	10	11	3	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48051292	T	T	48051292	2	4	84	1	0	0	0	0	0	0	0	1	4613	1074	38	3		3	DLX4	17	48051292	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	463534	48051292	33143918	1488	88095											
KIF2B	84643	broad.mit.edu	37	chr17	51901406	51901406	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtggcacaggatgtctttCtcctgctcagaaactccaca	9	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901406	T	T	51901406	3	4	84	1	0	0	0	0	1	0	0	0	8368	913	32	4	1014	4	KIF2B	17	51901406	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3850114	51901406	29293804	1489	88096											
KIF2B	84643	broad.mit.edu	37	chr17	51901520	51901520	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actggaagaagaagctgcaaGtccttgaggatggcaatcag	13	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51901520	C	C	51901520	3	2	84	1	0	0	0	0	1	0	0	0	8368	1029	36	4	1128	4	KIF2B	17	51901520	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	114	51901520	29293690	1490	88097											
HLF	3131	broad.mit.edu	37	chr17	53398272	53398272	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaggctggctttggaataGatggacagtttgtttcctgt	13	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53398272	A	A	53398272	1	1	84	0	1	0	0	0	0	0	0	0	7281	957	33	4		4	HLF	17	53398272	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1496752	53398272	27796938	1491	88098											
AKAP1	8165	broad.mit.edu	37	chr17	55190032	55190032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactttcccccaaacctaCcccaaacaagaaactcccca	2	20	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55190032	A	A	55190032	1	1	84	0	1	0	0	0	0	0	0	0	445	522	18	3		3	AKAP1	17	55190032	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1791760	55190032	26005178	1492	88099											
BZRAP1	9256	broad.mit.edu	37	chr17	56382730	56382730	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgggatatggtacaccctCcccaacaatgttctcacata	7	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56382730	A	A	56382730	1	1	84	0	1	0	0	0	0	0	0	0	1587	870	30	3		3	BZRAP1	17	56382730	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1192698	56382730	24812480	1493	88100											
TMEM49	81671	broad.mit.edu	37	chr17	57915655	57915655	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctactgtaccctgcttccaGtgctgtccccggcataggtc	10	15	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57915655	T	T	57915655	5	4	84	1	0	0	0	0	0	0	1	0	16296	1043	36	3	1012	3	TMEM49	17	57915655	Splice_Site	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1532925	57915655	23279555	1494	88101											
USP32	84669	broad.mit.edu	37	chr17	58313588	58313588	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaccatacctgctctctcGttctaaccatcctctgtatg	5	15	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58313588	A	A	58313588	4	1	84	1	0	0	0	0	0	1	0	0	17190	1153	40	4	3756	4	USP32	17	58313588	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	397933	58313588	22881622	1495	88102											
C17orf64	124773	broad.mit.edu	37	chr17	58506867	58506867	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaacatgcagaccccaggtCaagggagccccctgcctggg	12	16	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58506867	A	A	58506867	3	1	84	1	0	0	0	0	1	0	0	0	1888	827	29	3	592	3	C17orf64	17	58506867	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	193279	58506867	22688343	1496	88103											
APPBP2	10513	broad.mit.edu	37	chr17	58543708	58543708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttctccatagagtgcagCtttatttgcttgctggccat	9	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58543708	A	A	58543708	3	1	84	1	0	0	0	0	1	0	0	0	818	797	28	3	1177	3	APPBP2	17	58543708	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	36841	58543708	22651502	1497	88104											
BCAS3	54828	broad.mit.edu	37	chr17	59115404	59115404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatcgcctcgagccagctgGactctggttaggtagtacct	11	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59115404	T	T	59115404	3	4	84	1	0	0	0	0	1	0	0	0	1357	1183	41	3	2032	3	BCAS3	17	59115404	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	571696	59115404	22079806	1498	88105											
GH2	2689	broad.mit.edu	37	chr17	61958956	61958956	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgttccaggagctgggtTtttttttttctctctctctc	7	12	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61958956	G	G	61958956	1	3	84	0	1	0	0	0	0	0	0	0	6432	1856	64	5		5	GH2	17	61958956	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2843552	61958956	19236254	1499	88106											
SCN4A	6329	broad.mit.edu	37	chr17	62049987	62049987	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgccgatgacctccggcGgggggtctccgtagatcatg	16	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62049987	A	A	62049987	3	1	84	1	0	0	0	0	1	0	0	0	14033	1116	39	4	5391	4	SCN4A	17	62049987	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	91031	62049987	19145223	1500	88107											
CCDC45	90799	broad.mit.edu	37	chr17	62533676	62533676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaatagatgagggcctGgataaatgctgtgaacagcg	14	6	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62533676	T	T	62533676	1	4	84	0	1	0	0	0	0	0	0	0	2844	1363	47	2		2	CCDC45	17	62533676	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	483689	62533676	18661534	1501	88108											
GNA13	10672	broad.mit.edu	37	chr17	63010499	63010499	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtataagggcttctgttgcTggtcccggcgtttgttccgg	15	9	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63010499	C	C	63010499	3	2	84	1	0	0	0	0	1	0	0	0	6565	1580	55	5	127	5	GNA13	17	63010499	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	476823	63010499	18184711	1502	88109											
ARSG	22901	broad.mit.edu	37	chr17	66352974	66352974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccctccctccgcagggcCtccccctgcctccacctacc	5	25	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66352974	A	A	66352974	1	1	84	0	1	0	0	0	0	0	0	0	996	696	24	2		2	ARSG	17	66352974	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3342475	66352974	14842236	1503	88110											
ABCA9	10350	broad.mit.edu	37	chr17	66986245	66986245	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctacattcctgcaaggaaaGggcatttgcaccatatcctg	8	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66986245	A	A	66986245	1	1	84	0	1	0	0	0	0	0	0	0	39	1015	35	4		4	ABCA9	17	66986245	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	633271	66986245	14208965	1504	88111											
ABCA9	10350	broad.mit.edu	37	chr17	67041593	67041593	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctaaaggcagtgctgGgcctaaataagacatggagg	12	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67041593	C	C	67041593	1	2	84	0	1	0	0	0	0	0	0	0	39	1247	43	4		4	ABCA9	17	67041593	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	55348	67041593	14153617	1505	88112											
ABCA10	10349	broad.mit.edu	37	chr17	67149889	67149889	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatttaaagacattgttTataatttccttttaatatat	3	3	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67149889	A	A	67149889	1	1	84	0	1	0	0	0	0	0	0	0	29	1769	61	5		5	ABCA10	17	67149889	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	108296	67149889	14045321	1506	88113											
ABCA10	10349	broad.mit.edu	37	chr17	67150315	67150315	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagatatttgatttactgaTaggaataatagaaagatgtc	8	2	0	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67150315	G	G	67150315	1	3	84	0	1	0	0	0	0	0	0	0	29	1421	49	5		5	ABCA10	17	67150315	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	426	67150315	14044895	1507	88114											
ABCA10	10349	broad.mit.edu	37	chr17	67170783	67170784	+	Nonsense_Mutation	DNP	CC	AA	AA													ttcccatgaaagctggaatcCcagaaatatgaagtagtaaa							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	67170784	AA	AA	67170783	4	1	84	1	0	0	0	0	0	1	0	0	29	632	22	2	1682	2	ABCA10	17	67170783	Nonsense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	20468	67170783	14024427	1508	88115											
ABCA10	10349	broad.mit.edu	37	chr17	67212184	67212184	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggtatatttttccttgaaGattcataaatagcaatattc	5	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67212184	A	A	67212184	1	1	84	0	1	0	0	0	0	0	0	0	29	957	33	4		4	ABCA10	17	67212184	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	41401	67212184	13983026	1509	88116											
KCNJ2	3759	broad.mit.edu	37	chr17	68171259	68171259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttggccaccatggcagttGcaaatggctttgggaacggg	15	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68171259	T	T	68171259	3	4	84	1	0	0	0	0	1	0	0	0	8121	1319	46	3	81	3	KCNJ2	17	68171259	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	959075	68171259	13023951	1510	88117											
FBF1	85302	broad.mit.edu	37	chr17	73934199	73934199	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgggaggcatgttcgctttCcatgcatcttactctgaact	9	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73934199	A	A	73934199	1	1	84	0	1	0	0	0	0	0	0	0	5752	870	30	3		3	FBF1	17	73934199	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5762940	73934199	7261011	1511	88118											
DNAH17	8632	broad.mit.edu	37	chr17	76565323	76565323	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagggaattcccaaggcacGggctctttgtccttagagga	13	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76565323	C	C	76565323	2	2	84	1	0	0	0	0	0	0	0	1	4641	1103	39	4		4	DNAH17	17	76565323	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2631124	76565323	4629887	1512	88119											
C1QTNF1	114897	broad.mit.edu	37	chr17	77043818	77043818	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaccactactaccagacggTgatcttcgacacggagttcg	9	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77043818	A	A	77043818	3	1	84	1	0	0	0	0	1	0	0	0	1982	1696	59	5	504	5	C1QTNF1	17	77043818	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	478495	77043818	4151392	1513	88120											
CARD14	79092	broad.mit.edu	37	chr17	78165350	78165350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagagctgggctccagggtGgcccatggaggcactgggag	18	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78165350	A	A	78165350	1	1	84	0	1	0	0	0	0	0	0	0	2672	1363	47	4		4	CARD14	17	78165350	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1121532	78165350	3029860	1514	88121											
WDR45L	56270	broad.mit.edu	37	chr17	80588887	80588887	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacatggccaactcctcCttctagaaattctgaaatga	5	11	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80588887	T	T	80588887	3	4	84	1	0	0	0	0	1	0	0	0	17425	690	24	4	912	4	WDR45L	17	80588887	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2423537	80588887	606323	1515	88122											
COLEC12	81035	broad.mit.edu	37	chr18	331641	331641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagtgagagcctgaccaCcaatctggaagcttctgagt	11	10	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	331641	A	A	331641	1	1	84	0	1	0	0	0	0	0	0	0	3744	522	18	3		3	COLEC12	18	331641	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08		331641	77745607	1516	88123											
LAMA1	284217	broad.mit.edu	37	chr18	6961804	6961804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgagttcctagctgcgGccaaaccttccgtggggagg	15	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6961804	T	T	6961804	1	4	84	0	1	0	0	0	0	0	0	0	8677	1218	42	3		3	LAMA1	18	6961804	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6630163	6961804	71115444	1517	88124											
LAMA1	284217	broad.mit.edu	37	chr18	7044726	7044726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaagtatactgaccttcaCatgtattgccggaggacacg	9	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7044726	A	A	7044726	3	1	84	1	0	0	0	0	1	0	0	0	8677	478	17	3	8484	3	LAMA1	18	7044726	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	82922	7044726	71032522	1518	88125											
LAMA1	284217	broad.mit.edu	37	chr18	7050762	7050762	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcatcatcagccctgtaGgtgggtggccctcgtcttgg	12	12	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7050762	T	T	7050762	2	4	84	1	0	0	0	0	0	0	0	1	8677	987	35	2		2	LAMA1	18	7050762	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6036	7050762	71026486	1519	88126											
PPP4R1	9989	broad.mit.edu	37	chr18	9584684	9584684	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaaccactagaactatgtTcttaaacagcagaaaaaaaa	4	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9584684	C	C	9584684	1	2	84	0	1	0	0	0	0	0	0	0	12504	1798	62	5		5	PPP4R1	18	9584684	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2533922	9584684	68492564	1520	88127											
CEP192	55125	broad.mit.edu	37	chr18	13069268	13069268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctgttgtgctcttcctGgcccaacagagtgccctgaa	11	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13069268	T	T	13069268	1	4	84	0	1	0	0	0	0	0	0	0	3281	1363	47	2		2	CEP192	18	13069268	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3484584	13069268	65007980	1521	88128											
KCTD1	284252	broad.mit.edu	37	chr18	24180208	24180208	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggaaactgctacctgggtGatgccttccgctgtgccagc	13	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24180208	A	A	24180208	1	1	84	0	1	0	0	0	0	0	0	0	8166	1305	45	4		4	KCTD1	18	24180208	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	11110940	24180208	53897040	1522	88129											
CDH2	1000	broad.mit.edu	37	chr18	25583117	25583117	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcatcaattgctgttacGgtcatcacatatgttcctag	7	10	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25583117	T	T	25583117	2	4	84	1	0	0	0	0	0	0	0	1	3135	1103	39	1		1	CDH2	18	25583117	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1402909	25583117	52494131	1523	88130											
DSG2	1829	broad.mit.edu	37	chr18	29126202	29126202	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actatgccaccaaccactgtGatcctgggtcctagccagcc	8	16	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29126202	T	T	29126202	2	4	84	1	0	0	0	0	0	0	0	1	4817	1277	45	3		3	DSG2	18	29126202	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3543085	29126202	48951046	1524	88131											
C18orf34	374864	broad.mit.edu	37	chr18	30969551	30969551	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaccttcactgttctccTtagaggctccatatagaacc	6	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30969551	A	A	30969551	3	1	84	1	0	0	0	0	1	0	0	0	1920	1609	56	5	2518	5	C18orf34	18	30969551	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1843349	30969551	47107697	1525	88132											
NOL4	8715	broad.mit.edu	37	chr18	31599554	31599554	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgccattaaagctctctgCagcagaatcatctgttggaa	8	9	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31599554	G	G	31599554	3	3	84	1	0	0	0	0	1	0	0	0	10619	710	25	4	1156	4	NOL4	18	31599554	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	630003	31599554	46477694	1526	88133											
NOL4	8715	broad.mit.edu	37	chr18	31709892	31709892	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttgttctccatttggcccCgtttccacatgcatcgaata	6	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31709892	G	G	31709892	2	3	84	1	0	0	0	0	0	0	0	1	10619	639	23	4		4	NOL4	18	31709892	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	110338	31709892	46367356	1527	88134											
DTNA	1837	broad.mit.edu	37	chr18	32409131	32409131	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtacccattaacccaaaatAtgattatttcccttttttcc	3	11	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32409131	G	G	32409131	1	3	84	0	1	0	0	0	0	0	0	0	4828	464	16	5		5	DTNA	18	32409131	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	699239	32409131	45668117	1528	88135											
DTNA	1837	broad.mit.edu	37	chr18	32428317	32428317	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctaattgccaggtatgcGgcaaggctggcagcagagtc	15	9	0	1	rs144776465	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32428317	T	T	32428317	2	4	84	1	0	0	0	0	0	0	0	1	4828	1103	39	1		1	DTNA	18	32428317	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	19186	32428317	45648931	1529	88136											
DTNA	1837	broad.mit.edu	37	chr18	32462013	32462013	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagatttgctctaacatgtCatctgtggtttattttcagg	8	6	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32462013	A	A	32462013	1	1	84	0	1	0	0	0	0	0	0	0	4828	841	29	3		3	DTNA	18	32462013	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	33696	32462013	45615235	1530	88137											
SYT4	6860	broad.mit.edu	37	chr18	40850357	40850357	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgtctcctggggtagtcAcagatctctttccagtgctc	9	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40850357	T	T	40850357	4	4	84	1	0	0	0	0	0	1	0	0	15595	157	6	5	54	5	SYT4	18	40850357	Nonsense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	8388344	40850357	37226891	1531	88138											
SETBP1	26040	broad.mit.edu	37	chr18	42530423	42530423	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agggaaaagggaaggttattCcgcagatagtgcccaagagg	15	6	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42530423	G	G	42530423	3	3	84	1	0	0	0	0	1	0	0	0	14242	855	30	4	1321	4	SETBP1	18	42530423	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1680066	42530423	35546825	1532	88139											
SLC14A2	8170	broad.mit.edu	37	chr18	43248402	43248402	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagacaaaggtgactactacTggtggctgttgctacccgtc	11	11	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43248402	A	A	43248402	3	1	84	1	0	0	0	0	1	0	0	0	14510	1580	55	5	2050	5	SLC14A2	18	43248402	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	717979	43248402	34828846	1533	88140											
RNF165	494470	broad.mit.edu	37	chr18	44030343	44030343	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcccagcagacacacctccGccgtacgggagagctatgag	11	14	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44030343	C	C	44030343	3	2	84	1	0	0	0	0	1	0	0	0	13567	1087	38	4	718	4	RNF165	18	44030343	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	781941	44030343	34046905	1534	88141											
MBD1	4152	broad.mit.edu	37	chr18	47806388	47806388	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaggaagcagcagtagcCtgaaagggggtggaagggat	17	7	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47806388	A	A	47806388	5	1	84	1	0	0	0	0	0	0	1	0	9434	695	24	2		2	MBD1	18	47806388	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3776045	47806388	30270860	1535	88142											
WDR7	23335	broad.mit.edu	37	chr18	54591321	54591321	+	Missense_Mutation	SNP	C	T	T													tctcgaactttgtgccgatgCcgagaaacaacttgccaagt							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54591321	T	T	54591321	3	4	84	1	0	0	0	0	1	0	0	0	17447	739	26	4	3777	4	WDR7	18	54591321	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6784933	54591321	23485927	1536	88143	395	2									
WDR7	23335	broad.mit.edu	37	chr18	54591323	54591323	+	Missense_Mutation	SNP	G	C	C													tcgaactttgtgccgatgccGagaaacaacttgccaagtat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54591323	C	C	54591323	3	2	84	1	0	0	0	0	1	0	0	0	17447	1059	37	4	3779	4	WDR7	18	54591323	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2	54591323	23485925	1537	88144	395	2									
WDR7	23335	broad.mit.edu	37	chr18	54603141	54603141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatagccaaagaggtgaGcggaacttctcagtgtgctc	11	11	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54603141	T	T	54603141	1	4	84	0	1	0	0	0	0	0	0	0	17447	986	34	3		3	WDR7	18	54603141	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	11818	54603141	23474107	1538	88145											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60036291	60036291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgaacccctggaggtgGgggagaatgacagtttaagc	14	8	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60036291	T	T	60036291	3	4	84	1	0	0	0	0	1	0	0	0	16407	1232	43	2	1175	2	TNFRSF11A	18	60036291	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	5433150	60036291	18040957	1539	88146											
SERPINB7	8710	broad.mit.edu	37	chr18	61459636	61459636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtttacagttgcttcatGttaacactgcctcaggatat	7	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61459636	A	A	61459636	3	1	84	1	0	0	0	0	1	0	0	0	14219	1377	48	4	184	4	SERPINB7	18	61459636	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1423345	61459636	16617612	1540	88147											
DSEL	92126	broad.mit.edu	37	chr18	65178453	65178453	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagttttctgaggaaaatgCacaatatcttcaaacttgac	7	7	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65178453	A	A	65178453	2	1	84	1	0	0	0	0	0	0	0	1	4815	697	25	3		3	DSEL	18	65178453	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3718817	65178453	12898795	1541	88148											
RTTN	25914	broad.mit.edu	37	chr18	67834262	67834262	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaattctaagagattcttCtctccctacaaaagaagcag	5	10	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67834262	A	A	67834262	3	1	84	1	0	0	0	0	1	0	0	0	13848	912	32	3	5133	3	RTTN	18	67834262	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2655809	67834262	10242986	1542	88149											
NETO1	81832	broad.mit.edu	37	chr18	70417343	70417343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgtgactggtggtcgGcacctcttcgatttcatcta	10	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70417343	T	T	70417343	3	4	84	1	0	0	0	0	1	0	0	0	10434	1203	42	3	114	3	NETO1	18	70417343	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2583081	70417343	7659905	1543	88150											
CELF5	60680	broad.mit.edu	37	chr19	3251064	3251064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgagcagaagaccttgcccgGagtgagtcctgtgtggtgtc	15	10	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3251064	T	T	3251064	3	4	84	1	0	0	0	0	1	0	0	0	3249	1188	41	3	347	3	CELF5	19	3251064	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08		3251064	55877919	1544	88151											
ACSBG2	81616	broad.mit.edu	37	chr19	6156604	6156604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccaaagtcacccagggGtacctcagggctctgggcag	13	14	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6156604	T	T	6156604	1	4	84	0	1	0	0	0	0	0	0	0	174	1276	44	3		3	ACSBG2	19	6156604	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2905540	6156604	52972379	1545	88152											
MLLT1	4298	broad.mit.edu	37	chr19	6213341	6213341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggcaggaccctcagggggGcgatacctgctgcagcacgt	16	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6213341	A	A	6213341	1	1	84	0	1	0	0	0	0	0	0	0	9718	1218	42	4		4	MLLT1	19	6213341	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	56737	6213341	52915642	1546	88153											
DENND1C	79958	broad.mit.edu	37	chr19	6468428	6468428	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcccacgggcacccctcAtcctcagggctcagtggggg	13	16	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6468428	G	G	6468428	2	3	84	1	0	0	0	0	0	0	0	1	4468	214	8	5		5	DENND1C	19	6468428	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	255087	6468428	52660555	1547	88154											
VAV1	7409	broad.mit.edu	37	chr19	6832254	6832254	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgtccacagaggggcAggggctgggaaggaggaacg	18	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6832254	T	T	6832254	1	4	84	0	1	0	0	0	0	0	0	0	17258	203	7	5		5	VAV1	19	6832254	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	363826	6832254	52296729	1548	88155											
MUC16	94025	broad.mit.edu	37	chr19	9061000	9061000	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgtgagttgcagctgagtGagttcctggccaggaggctc	15	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9061000	C	C	9061000	3	2	84	1	0	0	0	0	1	0	0	0	10067	1290	45	4	17405	4	MUC16	19	9061000	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2228746	9061000	50067983	1549	88156											
ZNF317	57693	broad.mit.edu	37	chr19	9271813	9271813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacatgagcgttcaccttGtaaagaaacgagttgagtgt	12	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9271813	T	T	9271813	3	4	84	1	0	0	0	0	1	0	0	0	17961	1377	48	3	1514	3	ZNF317	19	9271813	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	210813	9271813	49857170	1550	88157											
ZNF559	84527	broad.mit.edu	37	chr19	9453698	9453698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaccatataaggaatGtgggcaaacctttagtaatt	10	5	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9453698	T	T	9453698	3	4	84	1	0	0	0	0	1	0	0	0	18117	1377	48	3	1585	3	ZNF559	19	9453698	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	181885	9453698	49675285	1551	88158											
CNN1	1264	broad.mit.edu	37	chr19	11660455	11660455	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctcaatgtcagcctgcagAtgggcagcaacaagggcgcc	13	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11660455	T	T	11660455	3	4	84	1	0	0	0	0	1	0	0	0	3641	333	12	5	765	5	CNN1	19	11660455	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2206757	11660455	47468528	1552	88159											
ZNF563	147837	broad.mit.edu	37	chr19	12433302	12433302	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgttgttcaagagtccatCatatgccctttccatatttc	6	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12433302	T	T	12433302	1	4	84	0	1	0	0	0	0	0	0	0	18121	841	29	4		4	ZNF563	19	12433302	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	772847	12433302	46695681	1553	88160											
ZNF333	84449	broad.mit.edu	37	chr19	14830005	14830005	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccctatcaatgtaatcaGtgtgagaaagccttcaggca	9	9	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14830005	A	A	14830005	2	1	84	1	0	0	0	0	0	0	0	1	17976	1020	36	4		4	ZNF333	19	14830005	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2396703	14830005	44298978	1554	88161											
OR7A17	26333	broad.mit.edu	37	chr19	14992166	14992166	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcattctctggttccAtctttttttttctatttatt	4	8	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14992166	T	T	14992166	3	4	84	1	0	0	0	0	1	0	0	0	11309	231	8	5	929	5	OR7A17	19	14992166	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	162161	14992166	44136817	1555	88162											
BRD4	23476	broad.mit.edu	37	chr19	15350220	15350220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacctttttgggcgcaactgGagtcttcggctcctgtttct	10	11	2	0	rs150535175		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15350220	T	T	15350220	3	4	84	1	0	0	0	0	1	0	0	0	1513	1174	41	3	545	3	BRD4	19	15350220	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	358054	15350220	43778763	1556	88163											
CYP4F12	66002	broad.mit.edu	37	chr19	15807349	15807349	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccctgtgtctgaggcagGgatgggatgatgggtgcggg	21	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15807349	A	A	15807349	1	1	84	0	1	0	0	0	0	0	0	0	4220	1247	43	4		4	CYP4F12	19	15807349	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	457129	15807349	43321634	1557	88164											
OR10H2	26538	broad.mit.edu	37	chr19	15839797	15839797	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacactctattcctcaggcaCctgagtagctggtgtggaag	11	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15839797	G	G	15839797	3	3	84	1	0	0	0	0	1	0	0	0	11000	507	18	4	946	4	OR10H2	19	15839797	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	32448	15839797	43289186	1558	88165											
CYP4F11	57834	broad.mit.edu	37	chr19	16032983	16032983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtgtcatggcctgaggGgcagccaagcaaaactgggt	15	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16032983	T	T	16032983	1	4	84	0	1	0	0	0	0	0	0	0	4219	1247	43	2		2	CYP4F11	19	16032983	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	193186	16032983	43096000	1559	88166											
CYP4F11	57834	broad.mit.edu	37	chr19	16045104	16045104	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagttgtcatagaaggtgtAggtccaggccaggacgcggg	17	8	1	1	rs142973676		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16045104	T	T	16045104	3	4	84	1	0	0	0	0	1	0	0	0	4219	420	15	5	1507	5	CYP4F11	19	16045104	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	12121	16045104	43083879	1560	88167											
USHBP1	83878	broad.mit.edu	37	chr19	17370517	17370517	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcggaggcgccgaagcaGggggtgagccagggagaagg	22	8	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17370517	A	A	17370517	2	1	84	1	0	0	0	0	0	0	0	1	17163	991	35	4		4	USHBP1	19	17370517	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1325413	17370517	41758466	1561	88168											
CILP2	148113	broad.mit.edu	37	chr19	19654863	19654863	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagcccatcggcttcacCgcctaccagggcgactttac	10	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19654863	T	T	19654863	2	4	84	1	0	0	0	0	0	0	0	1	3461	639	23	4		4	CILP2	19	19654863	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2284346	19654863	39474120	1562	88169											
ZNF257	113835	broad.mit.edu	37	chr19	22271976	22271976	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaccagtcttcacaccttaCtcaacataaaataattcata	1	11	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22271976	T	T	22271976	3	4	84	1	0	0	0	0	1	0	0	0	17926	565	20	4	1438	4	ZNF257	19	22271976	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2617113	22271976	36857007	1563	88170											
ZNF99	7652	broad.mit.edu	37	chr19	22941730	22941730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatctgatgttttctaagGgctgagaaatggttaaaagc	10	4	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22941730	T	T	22941730	2	4	84	1	0	0	0	0	0	0	0	1	18333	1219	43	2		2	ZNF99	19	22941730	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	669754	22941730	36187253	1564	88171											
ZNF91	7644	broad.mit.edu	37	chr19	23545105	23545105	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaatttccttatgattagTaagggttgaggaccaatgaa	10	4	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23545105	A	A	23545105	3	1	84	1	0	0	0	0	1	0	0	0	18329	1638	57	5	2903	5	ZNF91	19	23545105	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	603375	23545105	35583878	1565	88172											
ZNF536	9745	broad.mit.edu	37	chr19	30936135	30936135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacactttggcaaacgccGgggttctgtttgataaggag	13	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30936135	T	T	30936135	3	4	84	1	0	0	0	0	1	0	0	0	18101	1116	39	1	1668	1	ZNF536	19	30936135	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7391030	30936135	28192848	1566	88173											
ZNF536	9745	broad.mit.edu	37	chr19	31039359	31039359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagccctggctgaccccCcttccatgaaagtccacgga	8	16	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039359	A	A	31039359	3	1	84	1	0	0	0	0	1	0	0	0	18101	623	22	2	2843	2	ZNF536	19	31039359	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	103224	31039359	28089624	1567	88174											
ZNF536	9745	broad.mit.edu	37	chr19	31039943	31039943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagcctgatggaaaggcCcactctgaagaggatgtccc	13	10	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039943	A	A	31039943	2	1	84	1	0	0	0	0	0	0	0	1	18101	610	22	2		2	ZNF536	19	31039943	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	584	31039943	28089040	1568	88175											
LSM14A	26065	broad.mit.edu	37	chr19	34700057	34700057	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttgtaaatcgcgtgtatAatttctatttggctctttta	7	6	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34700057	T	T	34700057	1	4	84	0	1	0	0	0	0	0	0	0	9141	377	13	5		5	LSM14A	19	34700057	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3660114	34700057	24428926	1569	88176											
SCN1B	6324	broad.mit.edu	37	chr19	35524372	35524372	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaagagaggcccaggcaGtgacaccttcccctccctgg	13	14	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35524372	A	A	35524372	1	1	84	0	1	0	0	0	0	0	0	0	14028	1044	36	4		4	SCN1B	19	35524372	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	824315	35524372	23604611	1570	88177											
HPN	3249	broad.mit.edu	37	chr19	35557002	35557003	+	Intron	DNP	CA	AG	AG													gtctaatgggggaagggaggCagagatttgttttaggaaac							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	35557003	AG	AG	35557002	1	1	84	0	1	0	0	0	0	0	0	0	7403	725	25	3		3	HPN	19	35557002	Intron	DNP	CA	TCGA-17-Z055-01A-01W-0747-08	32630	35557002	23571981	1571	88178											
FXYD7	53822	broad.mit.edu	37	chr19	35642099	35642099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccagagccaggactggGctccaggtgcagccaaggtg	14	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35642099	T	T	35642099	1	4	84	0	1	0	0	0	0	0	0	0	6183	1218	42	3		3	FXYD7	19	35642099	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	85097	35642099	23486884	1572	88179											
LSR	51599	broad.mit.edu	37	chr19	35749980	35749980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccttggtgagtgggcctGggaagggggaggcatggccc	20	9	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35749980	T	T	35749980	1	4	84	0	1	0	0	0	0	0	0	0	9151	1363	47	2		2	LSR	19	35749980	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	107881	35749980	23379003	1573	88180											
SBSN	374897	broad.mit.edu	37	chr19	36017670	36017670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctccacttcctttccaGcctggtcagcagcatggttg	9	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36017670	T	T	36017670	3	4	84	1	0	0	0	0	1	0	0	0	13976	971	34	3	274	3	SBSN	19	36017670	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	267690	36017670	23111313	1574	88181											
ATP4A	495	broad.mit.edu	37	chr19	36050743	36050743	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccctcaggcacataggcCaccacgatggccatgaagaa	10	14	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36050743	A	A	36050743	2	1	84	1	0	0	0	0	0	0	0	1	1149	581	21	2		2	ATP4A	19	36050743	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	33073	36050743	23078240	1575	88182											
KIRREL2	84063	broad.mit.edu	37	chr19	36349507	36349507	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccaagagggcagcccGtactagctgtgagtagcaga	15	10	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36349507	A	A	36349507	1	1	84	0	1	0	0	0	0	0	0	0	8396	1160	40	4		4	KIRREL2	19	36349507	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	298764	36349507	22779476	1576	88183											
ZNF585A	199704	broad.mit.edu	37	chr19	37643141	37643141	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgaaggctttcccacattCgtggcattcatactgtctct	8	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37643141	A	A	37643141	4	1	84	1	0	0	0	0	0	1	0	0	18144	893	31	3	653	3	ZNF585A	19	37643141	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1293634	37643141	21485842	1577	88184											
SIPA1L3	23094	broad.mit.edu	37	chr19	38631937	38631937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccctggcagtggagcgGgcccgcatcccataactctc	11	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38631937	T	T	38631937	3	4	84	1	0	0	0	0	1	0	0	0	14444	1232	43	2	3291	2	SIPA1L3	19	38631937	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	988796	38631937	20497046	1578	88185											
PLEKHG2	64857	broad.mit.edu	37	chr19	39915833	39915833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggctgcggccagccaagGcccaggtccggttgaaccac	15	15	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39915833	T	T	39915833	3	4	84	1	0	0	0	0	1	0	0	0	12164	1203	42	3	4130	3	PLEKHG2	19	39915833	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1283896	39915833	19213150	1579	88186											
FCGBP	8857	broad.mit.edu	37	chr19	40368249	40368249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtgaaaccaaaccagcCccgaagagacgggaccccgc	11	15	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40368249	A	A	40368249	1	1	84	0	1	0	0	0	0	0	0	0	5835	638	22	2		2	FCGBP	19	40368249	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	452416	40368249	18760734	1580	88187											
PSG6	5675	broad.mit.edu	37	chr19	43411392	43411392	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggggatgctcctggtctcTtaaagggacacagtgaccct	12	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43411392	C	C	43411392	1	2	84	0	1	0	0	0	0	0	0	0	12765	1624	56	5		5	PSG6	19	43411392	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3043143	43411392	15717591	1581	88188											
PSG6	5675	broad.mit.edu	37	chr19	43520150	43520150	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggttaagacatccttattctCcctggggtttaagttgttga	10	7	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520150	T	T	43520150	1	4	84	0	1	0	0	0	0	0	0	0	12765	870	30	4		4	PSG6	19	43520150	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	108758	43520150	15608833	1582	88189											
PSG6	5675	broad.mit.edu	37	chr19	43596022	43596022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaagcatgacagtcagcCctgcaggaaacagaacaaaa	8	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43596022	A	A	43596022	1	1	84	0	1	0	0	0	0	0	0	0	12765	638	22	2		2	PSG6	19	43596022	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	75872	43596022	15532961	1583	88190											
PSG5	5673	broad.mit.edu	37	chr19	43674368	43674368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaggaagaggcatgtaGcatgaggtactctataattg	12	7	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43674368	T	T	43674368	1	4	84	0	1	0	0	0	0	0	0	0	12764	986	34	3		3	PSG5	19	43674368	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	78346	43674368	15454615	1584	88191											
PSG5	5673	broad.mit.edu	37	chr19	43679695	43679695	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctggtctcttaaagggacAcagtgaccctctgagccaag	10	12	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43679695	G	G	43679695	1	3	84	0	1	0	0	0	0	0	0	0	12764	174	6	5		5	PSG5	19	43679695	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	5327	43679695	15449288	1585	88192											
PSG9	5678	broad.mit.edu	37	chr19	43772304	43772304	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagtttaaaagtgatgctAggagggggagacagcatcag	15	4	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43772304	T	T	43772304	1	4	84	0	1	0	0	0	0	0	0	0	12768	435	15	5		5	PSG9	19	43772304	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	92609	43772304	15356679	1586	88193											
CEACAM20	125931	broad.mit.edu	37	chr19	45024484	45024484	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaagcagggagatggggaAggtccaggccctgggtgact	20	7	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45024484	C	C	45024484	1	2	84	0	1	0	0	0	0	0	0	0	3221	87	3	5		5	CEACAM20	19	45024484	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1252180	45024484	14104499	1587	88194											
PRKD2	25865	broad.mit.edu	37	chr19	47192863	47192863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacaggatcatctccaaCatgtccccatgcagcttctc	7	15	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47192863	A	A	47192863	3	1	84	1	0	0	0	0	1	0	0	0	12625	478	17	3	754	3	PRKD2	19	47192863	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2168379	47192863	11936120	1588	88195											
DHX34	9704	broad.mit.edu	37	chr19	47879114	47879114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtatctgcagagcctggGggtctgcggatcatggtagg	17	8	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47879114	T	T	47879114	1	4	84	0	1	0	0	0	0	0	0	0	4547	1247	43	2		2	DHX34	19	47879114	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	686251	47879114	11249869	1589	88196											
LIG1	3978	broad.mit.edu	37	chr19	48624486	48624486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggccagcaggaagccccCgtaccggccggcccgcttcc	14	18	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48624486	A	A	48624486	3	1	84	1	0	0	0	0	1	0	0	0	8853	652	23	1	453	1	LIG1	19	48624486	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	745372	48624486	10504497	1590	88197											
PLEKHA4	57664	broad.mit.edu	37	chr19	49357342	49357342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcacaacttggtcagcagCgtctggagaaaggagagcgg	15	10	2	2	rs16982323	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49357342	A	A	49357342	2	1	84	1	0	0	0	0	0	0	0	1	12153	755	27	3		3	PLEKHA4	19	49357342	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	732856	49357342	9771641	1591	88198											
RRAS	6237	broad.mit.edu	37	chr19	50139999	50140000	+	Intron	DNP	GG	AA	AA													ttgaaactgcgagtgaagccGgaggcatgaggtccagccag							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50140000	AA	AA	50139999	1	1	84	0	1	0	0	0	0	0	0	0	13787	1131	39	4		4	RRAS	19	50139999	Intron	DNP	GG	TCGA-17-Z055-01A-01W-0747-08	782657	50139999	8988984	1592	88199											
MYH14	79784	broad.mit.edu	37	chr19	50720811	50720811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacggcctgctcagcagcccCatgacgcctttcaggccgtg	11	17	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50720811	T	T	50720811	1	4	84	0	1	0	0	0	0	0	0	0	10127	609	21	4		4	MYH14	19	50720811	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	580812	50720811	8408172	1593	88200											
MYBPC2	4606	broad.mit.edu	37	chr19	50944203	50944203	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacctaggcatccccccggaGatttgggagctcctgaaagg	13	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50944203	A	A	50944203	2	1	84	1	0	0	0	0	0	0	0	1	10106	933	33	4		4	MYBPC2	19	50944203	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	223392	50944203	8184780	1594	88201											
GPR32	2854	broad.mit.edu	37	chr19	51274680	51274680	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggtccccgtttaacgtgGtgctgttggtccatctgtgg	13	10	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51274680	A	A	51274680	3	1	84	1	0	0	0	0	1	0	0	0	6753	1261	44	4	825	4	GPR32	19	51274680	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	330477	51274680	7854303	1595	88202											
KLK2	3817	broad.mit.edu	37	chr19	51378145	51378145	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcctaaagaagtaagtagGaccctgggatctggggaggg	16	6	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51378145	T	T	51378145	1	4	84	0	1	0	0	0	0	0	0	0	8475	1189	41	3		3	KLK2	19	51378145	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	103465	51378145	7750838	1596	88203											
SIGLEC7	27036	broad.mit.edu	37	chr19	51650072	51650072	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggagctggagccacagcCctggtcttcctctccttctg	13	14	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51650072	A	A	51650072	2	1	84	1	0	0	0	0	0	0	0	1	14426	610	22	2		2	SIGLEC7	19	51650072	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	271927	51650072	7478911	1597	88204											
CEACAM18	729767	broad.mit.edu	37	chr19	51983931	51983931	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaccggctggctggaggttCtaggtgggttagcaggtgct	17	8	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51983931	A	A	51983931	3	1	84	1	0	0	0	0	1	0	0	0	3219	912	32	3	590	3	CEACAM18	19	51983931	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	333859	51983931	7145052	1598	88205											
SIGLEC12	89858	broad.mit.edu	37	chr19	52003527	52003527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgactctggcacctccagcCtgtatcttgacagtaggtcc	9	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52003527	A	A	52003527	3	1	84	1	0	0	0	0	1	0	0	0	14421	681	24	2	1360	2	SIGLEC12	19	52003527	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	19596	52003527	7125456	1599	88206											
FPR2	2358	broad.mit.edu	37	chr19	52272424	52272424	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actacagtaactattccaaaTggggacacatactgtacttt	6	9	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52272424	C	C	52272424	2	2	84	1	0	0	0	0	0	0	0	1	6099	1461	51	5		5	FPR2	19	52272424	Silent	SNP	T	TCGA-17-Z055-01A-01W-0747-08	268897	52272424	6856559	1600	88207											
FPR3	2359	broad.mit.edu	37	chr19	52328054	52328054	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgaggagacggagttacaAgcaatgtgaggtcggggata	16	6	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52328054	G	G	52328054	2	3	84	1	0	0	0	0	0	0	0	1	6100	69	3	5		5	FPR3	19	52328054	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	55630	52328054	6800929	1601	88208											
ZNF578	147660	broad.mit.edu	37	chr19	53014541	53014541	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagttacaagtcatccctgAcatgccatcgtagatgtcac	7	12	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53014541	T	T	53014541	3	4	84	1	0	0	0	0	1	0	0	0	18137	275	10	5	917	5	ZNF578	19	53014541	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	686487	53014541	6114442	1602	88209											
ZNF677	342926	broad.mit.edu	37	chr19	53741220	53741220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctaatgtgtgttctccCatactgtgtatgtaataaag	7	7	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53741220	A	A	53741220	3	1	84	1	0	0	0	0	1	0	0	0	18211	594	21	2	998	2	ZNF677	19	53741220	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	726679	53741220	5387763	1603	88210											
CACNG6	59285	broad.mit.edu	37	chr19	54501419	54501419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaggctcccgtgggctgTtaactgtccagccctgagct	11	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54501419	C	C	54501419	1	2	84	0	1	0	0	0	0	0	0	0	2587	1740	60	5		5	CACNG6	19	54501419	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	760199	54501419	4627564	1604	88211											
LILRA3	11026	broad.mit.edu	37	chr19	54804156	54804156	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgagacagatcaggacCgtgaggatgggggtcatggc	16	9	3	3	rs142044806		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54804156	A	A	54804156	2	1	84	1	0	0	0	0	0	0	0	1	8858	639	23	1		1	LILRA3	19	54804156	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	302737	54804156	4324827	1605	88212											
LILRA1	11024	broad.mit.edu	37	chr19	55106221	55106221	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtgtcaggggatcctggaGacccaggagtaccgtctgta	15	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55106221	T	T	55106221	3	4	84	1	0	0	0	0	1	0	0	0	8856	933	33	3	172	3	LILRA1	19	55106221	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	302065	55106221	4022762	1606	88213											
LILRB4	11006	broad.mit.edu	37	chr19	55175259	55175259	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagccaggctctgtgatcAgctgggggaactctgtgacc	14	11	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55175259	C	C	55175259	3	2	84	1	0	0	0	0	1	0	0	0	8865	188	7	5	128	5	LILRB4	19	55175259	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	69038	55175259	3953724	1607	88214											
KIR3DL3	115653	broad.mit.edu	37	chr19	55246608	55246608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcccgccatctgggtgCttgtcctaaagagacgttgt	12	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55246608	A	A	55246608	1	1	84	0	1	0	0	0	0	0	0	0	8393	812	28	3		3	KIR3DL3	19	55246608	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	71349	55246608	3882375	1608	88215											
NLRP7	199713	broad.mit.edu	37	chr19	55451425	55451425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactttcagctcatcaagGccatcgaccacgaacaggat	10	12	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55451425	T	T	55451425	2	4	84	1	0	0	0	0	0	0	0	1	10577	1190	42	3		3	NLRP7	19	55451425	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	204817	55451425	3677558	1609	88216											
PPP1R12C	54776	broad.mit.edu	37	chr19	55605665	55605665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggagtccaggccccagCccctcctccctcagacccag	8	22	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55605665	A	A	55605665	1	1	84	0	1	0	0	0	0	0	0	0	12457	754	26	3		3	PPP1R12C	19	55605665	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	154240	55605665	3523318	1610	88217											
U2AF2	11338	broad.mit.edu	37	chr19	56174061	56174061	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaggctgatgttgtgtggAgctgccttgtgctgtttcca	13	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56174061	G	G	56174061	1	3	84	0	1	0	0	0	0	0	0	0	16949	319	11	5		5	U2AF2	19	56174061	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	568396	56174061	2954922	1611	88218											
NLRP11	204801	broad.mit.edu	37	chr19	56307668	56307668	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgcgtttaagctatcccCtcttttaaattaaaaaaaaa	3	10	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56307668	T	T	56307668	1	4	84	0	1	0	0	0	0	0	0	0	10568	696	24	4		4	NLRP11	19	56307668	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	133607	56307668	2821315	1612	88219											
NLRP5	126206	broad.mit.edu	37	chr19	56544055	56544055	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccacccacacctgcggcaGctggacctgggcagcagcat	11	17	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56544055	A	A	56544055	2	1	84	1	0	0	0	0	0	0	0	1	10575	962	34	4		4	NLRP5	19	56544055	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	236387	56544055	2584928	1613	88220											
NLRP5	126206	broad.mit.edu	37	chr19	56561898	56561898	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccctgtggaagacaatggCgtgaagcttctgtgcgaggt	14	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56561898	T	T	56561898	2	4	84	1	0	0	0	0	0	0	0	1	10575	755	27	4		4	NLRP5	19	56561898	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	17843	56561898	2567085	1614	88221											
ZNF583	147949	broad.mit.edu	37	chr19	56925276	56925276	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaactttttaacttaggctCatgtgaggatatgaacacta	7	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56925276	A	A	56925276	1	1	84	0	1	0	0	0	0	0	0	0	18142	841	29	3		3	ZNF583	19	56925276	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	363378	56925276	2203707	1615	88222											
PEG3	5178	broad.mit.edu	37	chr19	57334137	57334137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgcttcttgggttcctGgtgtgggaccagcggtctcg	14	11	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57334137	T	T	57334137	2	4	84	1	0	0	0	0	0	0	0	1	11814	1335	47	2		2	PEG3	19	57334137	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	408861	57334137	1794846	1616	88223											
ZNF329	79673	broad.mit.edu	37	chr19	58639405	58639405	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctgcttgaaggacttcCcacattctggacactgatat	8	10	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58639405	G	G	58639405	3	3	84	1	0	0	0	0	1	0	0	0	17973	623	22	4	163	4	ZNF329	19	58639405	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1305268	58639405	489578	1617	88224											
DEFB125	245938	broad.mit.edu	37	chr20	76964	76964	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactactatgccaccatctgAggccactactcccgagacta	7	15	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76964	T	T	76964	3	4	84	1	0	0	0	0	1	0	0	0	4450	304	11	5	383	5	DEFB125	20	76964	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08		76964	62948556	1618	88225											
TGM3	7053	broad.mit.edu	37	chr20	2321040	2321040	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgtccagcccaaggtccgTgtgtctcgtatcaacactga	9	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2321040	C	C	2321040	1	2	84	0	1	0	0	0	0	0	0	0	15954	1711	59	5		5	TGM3	20	2321040	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2244076	2321040	60704480	1619	88226											
ITPA	3704	broad.mit.edu	37	chr20	3194649	3194649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtacaggggcccgtgctgGttgaggacacttgtctgtgc	16	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3194649	T	T	3194649	3	4	84	1	0	0	0	0	1	0	0	0	7985	1261	44	3	222	3	ITPA	20	3194649	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	873609	3194649	59830871	1620	88227											
C20orf27	54976	broad.mit.edu	37	chr20	3736319	3736319	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccgcaggcccacccagtTgtgccacctatgatcccatg	8	17	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3736319	G	G	3736319	1	3	84	0	1	0	0	0	0	0	0	0	2129	1827	63	5		5	C20orf27	20	3736319	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	541670	3736319	59289201	1621	88228											
GPCPD1	56261	broad.mit.edu	37	chr20	5554524	5554524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgatccatatttctcTacctcagcagtctaaagttg	5	13	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5554524	A	A	5554524	1	1	84	0	1	0	0	0	0	0	0	0	6668	1537	53	5		5	GPCPD1	20	5554524	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1818205	5554524	57470996	1622	88229											
PLCB4	5332	broad.mit.edu	37	chr20	9434108	9434108	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcaatgaagaagaagGggtaatactgtttatttcct	11	4	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9434108	A	A	9434108	3	1	84	1	0	0	0	0	1	0	0	0	12125	1246	43	4	3113	4	PLCB4	20	9434108	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3879584	9434108	53591412	1623	88230											
C20orf103	24141	broad.mit.edu	37	chr20	9498868	9498868	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attatctcagattttgtcttCagtgaaggtaagttgttggg	11	4	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9498868	T	T	9498868	2	4	84	1	0	0	0	0	0	0	0	1	2097	825	29	4		4	C20orf103	20	9498868	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	64760	9498868	53526652	1624	88231											
C20orf103	24141	broad.mit.edu	37	chr20	9510550	9510550	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttttccatcttgtacaCgagatacaccaacatagcta	5	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9510550	A	A	9510550	1	1	84	0	1	0	0	0	0	0	0	0	2097	551	19	3		3	C20orf103	20	9510550	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	11682	9510550	53514970	1625	88232											
KIF16B	55614	broad.mit.edu	37	chr20	16360305	16360305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccactgtacctccccaCgccgcaggagctggatcatc	8	19	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16360305	A	A	16360305	3	1	84	1	0	0	0	0	1	0	0	0	8348	536	19	3	1643	3	KIF16B	20	16360305	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	6849755	16360305	46665215	1626	88233											
POLR3F	10621	broad.mit.edu	37	chr20	18460626	18460626	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccaaaatataggtgtttTtgtttttggaaattgttatc	8	3	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18460626	G	G	18460626	1	3	84	0	1	0	0	0	0	0	0	0	12328	1856	64	5		5	POLR3F	20	18460626	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2100321	18460626	44564894	1627	88234											
CRNKL1	51340	broad.mit.edu	37	chr20	20018210	20018210	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaaactgagcaaagctgatCcatacctttaaaaaaagtta	5	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20018210	T	T	20018210	4	4	84	1	0	0	0	0	0	1	0	0	3923	856	30	4	418	4	CRNKL1	20	20018210	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1557584	20018210	43007310	1628	88235											
C20orf26	26074	broad.mit.edu	37	chr20	20270927	20270927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaattttaaatggaaaaCttgccatctcttctaggggg	8	6	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20270927	A	A	20270927	1	1	84	0	1	0	0	0	0	0	0	0	2128	580	20	3		3	C20orf26	20	20270927	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	252717	20270927	42754593	1629	88236											
THBD	7056	broad.mit.edu	37	chr20	23028784	23028784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggaggttgtggcacaccCcggagcagaagccgccgttt	16	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23028784	A	A	23028784	3	1	84	1	0	0	0	0	1	0	0	0	15975	623	22	2	373	2	THBD	20	23028784	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2757857	23028784	39996736	1630	88237											
ENTPD6	955	broad.mit.edu	37	chr20	25193996	25193996	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctcaaggccacagctgGcttacgcctgttacctggag	12	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25193996	C	C	25193996	3	2	84	1	0	0	0	0	1	0	0	0	5185	1203	42	4	572	4	ENTPD6	20	25193996	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2165212	25193996	37831524	1631	88238											
DEFB119	245932	broad.mit.edu	37	chr20	29978326	29978326	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggtggctgagctgcagGggaaggaaatagggttccct	18	6	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29978326	T	T	29978326	1	4	84	0	1	0	0	0	0	0	0	0	4446	1247	43	2		2	DEFB119	20	29978326	5'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	4784330	29978326	33047194	1632	88239											
HCK	3055	broad.mit.edu	37	chr20	30671745	30671745	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgaccctcggcagggagataCcgtgaaacattacaagatcc	10	12	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30671745	G	G	30671745	3	3	84	1	0	0	0	0	1	0	0	0	7060	507	18	4	613	4	HCK	20	30671745	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	693419	30671745	32353775	1633	88240											
BPIL1	80341	broad.mit.edu	37	chr20	31603373	31603373	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacagtgaagaaagagtgGgatttcaggcagggggtact	17	5	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31603373	A	A	31603373	1	1	84	0	1	0	0	0	0	0	0	0	1500	1247	43	4		4	BPIL1	20	31603373	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	931628	31603373	31422147	1634	88241											
EPB41L1	2036	broad.mit.edu	37	chr20	34761684	34761684	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctccttcatgccaatgcAggcgtgctggtcaccatgac	10	13	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34761684	G	G	34761684	5	3	84	1	0	0	0	0	0	0	1	0	5194	202	7	5		5	EPB41L1	20	34761684	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	3158311	34761684	28263836	1635	88242											
RPRD1B	58490	broad.mit.edu	37	chr20	36688015	36688015	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttaacgtctgcaggtatagActactttccatgttgtattg	8	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36688015	T	T	36688015	1	4	84	0	1	0	0	0	0	0	0	0	13727	290	10	5		5	RPRD1B	20	36688015	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1926331	36688015	26337505	1636	88243											
PPP1R16B	26051	broad.mit.edu	37	chr20	37536785	37536785	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatcagcggacctccacCtacaacggggacatcaggga	13	12	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37536785	A	A	37536785	2	1	84	1	0	0	0	0	0	0	0	1	12467	668	24	2		2	PPP1R16B	20	37536785	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	848770	37536785	25488735	1637	88244											
PTPRT	11122	broad.mit.edu	37	chr20	40747036	40747036	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggcgagtgcaggagaGgcttaccctgcccacttcca	12	15	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40747036	A	A	40747036	1	1	84	0	1	0	0	0	0	0	0	0	12920	1015	35	4		4	PTPRT	20	40747036	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3210251	40747036	22278484	1638	88245											
PTPRT	11122	broad.mit.edu	37	chr20	41400052	41400052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatcctaacgagtctgaGcagaggcttctctcatgctt	8	12	4	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41400052	T	T	41400052	1	4	84	0	1	0	0	0	0	0	0	0	12920	986	34	3		3	PTPRT	20	41400052	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	653016	41400052	21625468	1639	88246											
SFRS6	6431	broad.mit.edu	37	chr20	42089580	42089580	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcccgttccaattcgccGctacctgttccaccctcaaa	5	18	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42089580	C	C	42089580	2	2	84	1	0	0	0	0	0	0	0	1	14294	1074	38	4		4	SFRS6	20	42089580	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	689528	42089580	20935940	1640	88247											
HNF4A	3172	broad.mit.edu	37	chr20	43058091	43058091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggaggggagaactttcCcgggcctcttcatttactcc	13	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43058091	A	A	43058091	1	1	84	0	1	0	0	0	0	0	0	0	7320	638	22	2		2	HNF4A	20	43058091	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	968511	43058091	19967429	1641	88248											
STK4	6789	broad.mit.edu	37	chr20	43703547	43703547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctgtgatctgaccacaGtgtcttcctcctgtctccct	6	16	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43703547	T	T	43703547	1	4	84	0	1	0	0	0	0	0	0	0	15424	1044	36	3		3	STK4	20	43703547	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	645456	43703547	19321973	1642	88249											
PI3	5266	broad.mit.edu	37	chr20	43803524	43803524	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggactgcataaagattGgtatggccttagctcttagc	11	8	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43803524	T	T	43803524	1	4	84	0	1	0	0	0	0	0	0	0	11965	1363	47	2		2	PI3	20	43803524	5'Flank	SNP	G	TCGA-17-Z055-01A-01W-0747-08	99977	43803524	19221996	1643	88250											
DNTTIP1	116092	broad.mit.edu	37	chr20	44429810	44429811	+	Intron	INS	-	A	A													actgtgttctcgggtattggINSagcgggaggtccttcaggct							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44429811	A	A	44429810	6	5	84	0	1	1	1	0	0	0	0	0	4721	1189	41	0		0	DNTTIP1	20	44429810	Intron	INS	-	TCGA-17-Z055-01A-01W-0747-08	626286	44429810	18595710	1644	88251											
SLC12A5	57468	broad.mit.edu	37	chr20	44671697	44671697	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagagtgagatggggttgatCttgaccctgactttttgccc	13	8	1	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44671697	A	A	44671697	1	1	84	0	1	0	0	0	0	0	0	0	14499	928	32	3		3	SLC12A5	20	44671697	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	241887	44671697	18353823	1645	88252											
ELMO2	63916	broad.mit.edu	37	chr20	45022100	45022100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgagtgaagataaataGtgccgtctccttgggtcgtt	12	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45022100	A	A	45022100	1	1	84	0	1	0	0	0	0	0	0	0	5108	1044	36	4		4	ELMO2	20	45022100	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	350403	45022100	18003420	1646	88253											
TP53RK	112858	broad.mit.edu	37	chr20	45315962	45315962	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccagtttttccatctatatCtacttatttcaggactattg	5	9	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45315962	A	A	45315962	1	1	84	0	1	0	0	0	0	0	0	0	16514	928	32	3		3	TP53RK	20	45315962	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	293862	45315962	17709558	1647	88254											
PREX1	57580	broad.mit.edu	37	chr20	47274816	47274816	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggagcgaggtgggcctaCggccagccccaccgtggccc	16	16	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47274816	T	T	47274816	1	4	84	0	1	0	0	0	0	0	0	0	12582	551	19	4		4	PREX1	20	47274816	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1958854	47274816	15750704	1648	88255											
ZNFX1	57169	broad.mit.edu	37	chr20	47865476	47865476	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgactcaggcacggaacaaGggaccatttgttcatggccg	12	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47865476	A	A	47865476	3	1	84	1	0	0	0	0	1	0	0	0	18334	1000	35	4	1675	4	ZNFX1	20	47865476	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	590660	47865476	15160044	1649	88256											
SALL4	57167	broad.mit.edu	37	chr20	50407593	50407593	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacagaggtggttacaaggaCaggtttgctgtctaaagaaa	12	5	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50407593	G	G	50407593	3	3	84	1	0	0	0	0	1	0	0	0	13924	478	17	4	1744	4	SALL4	20	50407593	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2542117	50407593	12617927	1650	88257											
ZNF217	7764	broad.mit.edu	37	chr20	52193540	52193541	+	Missense_Mutation	DNP	CC	AA	AA													ctggtgagaggacagcgctgCccagaacattctgaaaaaca							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52193541	AA	AA	52193540	3	1	84	1	0	0	0	0	1	0	0	0	17898	739	26	3	1391	3	ZNF217	20	52193540	Missense_Mutation	DNP	CC	TCGA-17-Z055-01A-01W-0747-08	1785947	52193540	10831980	1651	88258											
MC3R	4159	broad.mit.edu	37	chr20	54824718	54824718	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgccccaccaacccctaCtgcatctgctacactgccca	4	21	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54824718	A	A	54824718	4	1	84	1	0	0	0	0	0	1	0	0	9458	576	20	3	821	3	MC3R	20	54824718	Nonsense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2631178	54824718	8200802	1652	88259											
BMP7	655	broad.mit.edu	37	chr20	55746101	55746101	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcgaagtagaggacggagaTggcattgagctgcgtgggcg	18	6	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55746101	A	A	55746101	3	1	84	1	0	0	0	0	1	0	0	0	1471	1464	51	5	89	5	BMP7	20	55746101	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	921383	55746101	7279419	1653	88260											
PCK1	5105	broad.mit.edu	37	chr20	56136707	56136707	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactggtaagctcggcccccGctgcctgtcccagcaccctg	10	18	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56136707	C	C	56136707	1	2	84	0	1	0	0	0	0	0	0	0	11675	1102	38	4		4	PCK1	20	56136707	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	390606	56136707	6888813	1654	88261											
PHACTR3	116154	broad.mit.edu	37	chr20	58342339	58342339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttagctggggctgactccCtggacagtcctcccagacct	10	16	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58342339	A	A	58342339	3	1	84	1	0	0	0	0	1	0	0	0	11906	680	24	2	658	2	PHACTR3	20	58342339	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2205632	58342339	4683181	1655	88262											
NTSR1	4923	broad.mit.edu	37	chr20	61391345	61391345	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagagttctctctgggaTctgagcgcctctctctcccc	8	16	6	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61391345	C	C	61391345	1	2	84	0	1	0	0	0	0	0	0	0	10805	1450	50	5		5	NTSR1	20	61391345	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3049006	61391345	1634175	1656	88263											
YTHDF1	54915	broad.mit.edu	37	chr20	61833966	61833966	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accccacaaaaatgcccactCccattgacgctgaagagcag	7	15	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61833966	A	A	61833966	2	1	84	1	0	0	0	0	0	0	0	1	17625	842	30	3		3	YTHDF1	20	61833966	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	442621	61833966	1191554	1657	88264											
NKAIN4	128414	broad.mit.edu	37	chr20	61881203	61881203	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcagtggtgtccaggaaaAtatgccaggatggtgccatg	14	7	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61881203	G	G	61881203	1	3	84	0	1	0	0	0	0	0	0	0	10533	116	4	5		5	NKAIN4	20	61881203	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	47237	61881203	1144317	1658	88265											
TPTE	7179	broad.mit.edu	37	chr21	10952867	10952867	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagccaccgtgcccagccaAgtctcagatatatttaatac	7	12	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10952867	T	T	10952867	1	4	84	0	1	0	0	0	0	0	0	0	16554	87	3	5		5	TPTE	21	10952867	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08		10952867	37177028	1659	88266											
BAGE2	85319	broad.mit.edu	37	chr21	11038703	11038703	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgttccaatatcttttctGtcaatatcattaaaatcacc	2	9	5	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11038703	C	C	11038703	1	2	84	0	1	0	0	0	0	0	0	0	1297	1392	48	4		4	BAGE2	21	11038703	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	85836	11038703	37091192	1660	88267											
TMPRSS15	5651	broad.mit.edu	37	chr21	19653625	19653625	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcatgacatttcagaataTgtttctatcctgaaatgttc	5	8	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19653625	A	A	19653625	1	1	84	0	1	0	0	0	0	0	0	0	16369	1479	51	5		5	TMPRSS15	21	19653625	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	8614922	19653625	28476270	1661	88268											
TMPRSS15	5651	broad.mit.edu	37	chr21	19770595	19770595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggattatatgtaactccgGatgttattttaaatgtcgct	8	5	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19770595	T	T	19770595	3	4	84	1	0	0	0	0	1	0	0	0	16369	1174	41	3	2958	3	TMPRSS15	21	19770595	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	116970	19770595	28359300	1662	88269											
NCAM2	4685	broad.mit.edu	37	chr21	22710638	22710638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatagtagacttaaacaccCatcatgacttttgtctgaga	6	9	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22710638	A	A	22710638	1	1	84	0	1	0	0	0	0	0	0	0	10298	609	21	2		2	NCAM2	21	22710638	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2940043	22710638	25419257	1663	88270											
MRPL39	54148	broad.mit.edu	37	chr21	26976262	26976262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatctagaaatttaaaaCagactgattatctaacaaaa	3	5	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26976262	A	A	26976262	1	1	84	0	1	0	0	0	0	0	0	0	9896	493	17	3		3	MRPL39	21	26976262	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4265624	26976262	21153633	1664	88271											
CYYR1	116159	broad.mit.edu	37	chr21	27840827	27840827	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgggagatagattatttcCttgcgtttccaggataagga	11	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27840827	T	T	27840827	3	4	84	1	0	0	0	0	1	0	0	0	4244	681	24	4	10	4	CYYR1	21	27840827	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	864565	27840827	20289068	1665	88272											
N6AMT1	29104	broad.mit.edu	37	chr21	30248615	30248615	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttttaatgacaaatttcTgataaaattccttgttacct	3	6	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30248615	C	C	30248615	1	2	84	0	1	0	0	0	0	0	0	0	10208	1595	55	5		5	N6AMT1	21	30248615	3'UTR	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2407788	30248615	17881280	1666	88273											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31812499	31812499	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgttaatatatttcattttGactgcagcctaattaagtgt	7	5	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31812499	C	C	31812499	1	2	84	0	1	0	0	0	0	0	0	0	8597	1305	45	4		4	KRTAP15-1	21	31812499	5'Flank	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1563884	31812499	16317396	1667	88274											
GCFC1	94104	broad.mit.edu	37	chr21	34128684	34128684	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaactgaacagactgcAaatggaaaataaaaaaaggc	8	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34128684	T	T	34128684	1	4	84	0	1	0	0	0	0	0	0	0	6351	145	5	5		5	GCFC1	21	34128684	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2316185	34128684	14001211	1668	88275											
ERG	2078	broad.mit.edu	37	chr21	39774447	39774447	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacgtaagaccctacgctcTtgctgggaggcaggggcggg	17	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39774447	A	A	39774447	1	1	84	0	1	0	0	0	0	0	0	0	5264	1624	56	5		5	ERG	21	39774447	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	5645763	39774447	8355448	1669	88276											
ETS2	2114	broad.mit.edu	37	chr21	40194596	40194596	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccatccatgttcaccaaAggtggcccgccggtggggaa	12	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40194596	C	C	40194596	5	2	84	1	0	0	0	0	0	0	1	0	5318	86	3	5	1227	5	ETS2	21	40194596	Splice_Site	SNP	A	TCGA-17-Z055-01A-01W-0747-08	420149	40194596	7935299	1670	88277											
B3GALT5	10317	broad.mit.edu	37	chr21	41032397	41032397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctagagtttccaaaacacGggtctcctctcccacctcag	6	15	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41032397	A	A	41032397	1	1	84	0	1	0	0	0	0	0	0	0	1255	1131	39	4		4	B3GALT5	21	41032397	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	837801	41032397	7097498	1671	88278											
DSCAM	1826	broad.mit.edu	37	chr21	41427699	41427699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcaaaagctgagccctgGgtatgtcgatgtgcattcgc	11	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41427699	T	T	41427699	3	4	84	1	0	0	0	0	1	0	0	0	4808	1232	43	2	1070	2	DSCAM	21	41427699	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	395302	41427699	6702196	1672	88279											
DSCAM	1826	broad.mit.edu	37	chr21	41539140	41539140	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatacaaatgtttgctgagTttaccttccatgtgaccctg	8	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41539140	G	G	41539140	1	3	84	0	1	0	0	0	0	0	0	0	4808	1740	60	5		5	DSCAM	21	41539140	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	111441	41539140	6590755	1673	88280											
DSCAM	1826	broad.mit.edu	37	chr21	41684064	41684064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctcattccgggctatgCaggtgtaattcccattgtgc	11	12	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41684064	A	A	41684064	3	1	84	1	0	0	0	0	1	0	0	0	4808	710	25	3	4132	3	DSCAM	21	41684064	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	144924	41684064	6445831	1674	88281											
MX2	4600	broad.mit.edu	37	chr21	42762541	42762541	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagcagacgatcaactTggtggtggttccctgtaacg	14	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42762541	A	A	42762541	4	1	84	1	0	0	0	0	0	1	0	0	10092	1821	63	5	800	5	MX2	21	42762541	Nonsense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1078477	42762541	5367354	1675	88282											
UBASH3A	53347	broad.mit.edu	37	chr21	43826565	43826565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgataccaggaagagcCgggcgcctctgggtgggatg	19	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43826565	A	A	43826565	1	1	84	0	1	0	0	0	0	0	0	0	16965	667	23	1		1	UBASH3A	21	43826565	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1064024	43826565	4303330	1676	88283											
RSPH1	89765	broad.mit.edu	37	chr21	43913208	43913208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggtaatgaaaattgaCacaattacagctaccattca	6	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43913208	A	A	43913208	1	1	84	0	1	0	0	0	0	0	0	0	13813	493	17	3		3	RSPH1	21	43913208	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	86643	43913208	4216687	1677	88284											
PDE9A	5152	broad.mit.edu	37	chr21	44108130	44108130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctccggccgcgctcctcGgggtgtgcctggcacttctc	14	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44108130	T	T	44108130	1	4	84	0	1	0	0	0	0	0	0	0	11749	1131	39	1		1	PDE9A	21	44108130	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	194922	44108130	4021765	1678	88285											
CRYBB3	1417	broad.mit.edu	37	chr22	25599901	25599901	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttctgggtgttcctggaAgcagggtgcactgagagctg	15	9	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25599901	G	G	25599901	1	3	84	0	1	0	0	0	0	0	0	0	3944	87	3	5		5	CRYBB3	22	25599901	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08		25599901	25704665	1679	88286											
MYO18B	84700	broad.mit.edu	37	chr22	26222472	26222472	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcactcatcaacaggtaacGgggccttttcctaggcacac	8	14	3	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26222472	A	A	26222472	1	1	84	0	1	0	0	0	0	0	0	0	10160	1131	39	4		4	MYO18B	22	26222472	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	622571	26222472	25082094	1680	88287											
MYO18B	84700	broad.mit.edu	37	chr22	26239790	26239790	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgcggtacgacctcacGggctggctccacagagccaa	12	15	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26239790	T	T	26239790	2	4	84	1	0	0	0	0	0	0	0	1	10160	1103	39	1		1	MYO18B	22	26239790	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	17318	26239790	25064776	1681	88288											
ZNRF3	84133	broad.mit.edu	37	chr22	29439407	29439407	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgagcaaggatccagcacCgccctcctcgagtgagcctc	10	17	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29439407	T	T	29439407	3	4	84	1	0	0	0	0	1	0	0	0	18342	652	23	4	332	4	ZNRF3	22	29439407	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3199617	29439407	21865159	1682	88289											
SFI1	9814	broad.mit.edu	37	chr22	31979854	31979854	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccatcttcttcctcccttGctttagctgctgcacaggtt	6	14	2	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31979854	A	A	31979854	1	1	84	0	1	0	0	0	0	0	0	0	14269	1334	46	4		4	SFI1	22	31979854	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2540447	31979854	19324712	1683	88290											
TRIOBP	11078	broad.mit.edu	37	chr22	38111855	38111855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgaggaggcctcgggaggGgccgagagctgacagctccc	17	14	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38111855	T	T	38111855	3	4	84	1	0	0	0	0	1	0	0	0	16678	1232	43	2	556	2	TRIOBP	22	38111855	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6132001	38111855	13192711	1684	88291											
TRIOBP	11078	broad.mit.edu	37	chr22	38165001	38165001	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttggcaggagcaagacaAcctatgctctcctctgctcc	10	14	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38165001	G	G	38165001	1	3	84	0	1	0	0	0	0	0	0	0	16678	58	2	5		5	TRIOBP	22	38165001	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	53146	38165001	13139565	1685	88292											
JOSD1	9929	broad.mit.edu	37	chr22	39085300	39085300	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagcctgattcagattaCctgcgcttgtcccaccaaac	7	14	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39085300	A	A	39085300	5	1	84	1	0	0	0	0	0	0	1	0	8028	521	18	3	305	3	JOSD1	22	39085300	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	920299	39085300	12219266	1686	88293											
NPTXR	23467	broad.mit.edu	37	chr22	39219275	39219275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgggccacctggacaCaggtcccccaaccccaggtc	11	18	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39219275	A	A	39219275	1	1	84	0	1	0	0	0	0	0	0	0	10699	493	17	3		3	NPTXR	22	39219275	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	133975	39219275	12085291	1687	88294											
CACNA1I	8911	broad.mit.edu	37	chr22	40078528	40078528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacccacctgagcccatgCgtgtgggagacctgggcgaa	15	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40078528	A	A	40078528	3	1	84	1	0	0	0	0	1	0	0	0	2572	768	27	3	5830	3	CACNA1I	22	40078528	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	859253	40078528	11226038	1688	88295											
GRAP2	9402	broad.mit.edu	37	chr22	40351868	40351868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggcggagcttgggagcCaggaaggatatgtgcccaag	16	7	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40351868	A	A	40351868	3	1	84	1	0	0	0	0	1	0	0	0	6820	595	21	2	130	2	GRAP2	22	40351868	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	273340	40351868	10952698	1689	88296											
MEI1	150365	broad.mit.edu	37	chr22	42114035	42114035	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcatatagcagttgacatTgtgaaatttcccttggctcc	7	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42114035	C	C	42114035	1	2	84	0	1	0	0	0	0	0	0	0	9558	1827	63	5		5	MEI1	22	42114035	Intron	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1762167	42114035	9190531	1690	88297											
SERHL2	253190	broad.mit.edu	37	chr22	42967043	42967043	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgccctcgccaggacttAgccaccccaacagagatggg	12	14	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42967043	T	T	42967043	1	4	84	0	1	0	0	0	0	0	0	0	14191	435	15	5		5	SERHL2	22	42967043	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	853008	42967043	8337523	1691	88298											
PHF21B	112885	broad.mit.edu	37	chr22	45312231	45312231	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagacacggcggtgctggGggccatggcggcggcattgc	18	12	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45312231	A	A	45312231	3	1	84	1	0	0	0	0	1	0	0	0	11929	1232	43	4	1142	4	PHF21B	22	45312231	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2345188	45312231	5992335	1692	88299											
PKDREJ	10343	broad.mit.edu	37	chr22	46657468	46657468	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttatccctaaaattactAcactggacaacaaatttagt	4	9	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46657468	G	G	46657468	2	3	84	1	0	0	0	0	0	0	0	1	12065	389	14	5		5	PKDREJ	22	46657468	Silent	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1345237	46657468	4647098	1693	88300											
BRD1	23774	broad.mit.edu	37	chr22	50192205	50192205	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagcgccgcaaacacccaCctccttcagactcacgggct	8	18	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50192205	A	A	50192205	5	1	84	1	0	0	0	0	0	0	1	0	1510	521	18	3	1426	3	BRD1	22	50192205	Splice_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3534737	50192205	1112361	1694	88301											
SBF1	6305	broad.mit.edu	37	chr22	50903240	50903240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgccctcccgtcctgctacCctcgtacgttcttgtagagc	8	17	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50903240	A	A	50903240	1	1	84	0	1	0	0	0	0	0	0	0	13970	638	22	2		2	SBF1	22	50903240	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	711035	50903240	401326	1695	88302											
ARSF	416	broad.mit.edu	37	chrX	3002385	3002385	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggcatgccgttcactctcGttgacagctgctggccggac	12	13	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3002385	C	C	3002385	3	2	84	1	0	0	0	0	1	0	0	0	995	1145	40	4	526	4	ARSF	23	3002385	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08		3002385	152268175	1696	88303											
ARHGAP6	395	broad.mit.edu	37	chrX	11196310	11196310	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagggtgtcgcagttgcaGggaggtagaaggtatatgag	19	3	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11196310	C	C	11196310	2	2	84	1	0	0	0	0	0	0	0	1	889	987	35	4		4	ARHGAP6	23	11196310	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	8193925	11196310	144074250	1697	88304											
FANCB	2187	broad.mit.edu	37	chrX	14871184	14871184	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctgcacttgacgtattatCatcttttccttgaactaggt	6	10	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14871184	A	A	14871184	3	1	84	1	0	0	0	0	1	0	0	0	5720	826	29	3	1296	3	FANCB	23	14871184	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3674874	14871184	140399376	1698	88305											
SCML2	10389	broad.mit.edu	37	chrX	18278384	18278384	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagagaagctgcagatgTagaacatatcacgggcaaag	11	6	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18278384	C	C	18278384	3	2	84	1	0	0	0	0	1	0	0	0	14023	1638	57	5	1154	5	SCML2	23	18278384	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	3407200	18278384	136992176	1699	88306											
CDKL5	6792	broad.mit.edu	37	chrX	18622562	18622562	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctttctgaagccagggcCcaaattgcggagcccagtac	10	13	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18622562	A	A	18622562	2	1	84	1	0	0	0	0	0	0	0	1	3187	610	22	2		2	CDKL5	23	18622562	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	344178	18622562	136647998	1700	88307											
CNKSR2	22866	broad.mit.edu	37	chrX	21488899	21488899	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaggattgtactgtatatGaaacagagaataaaattctt	7	4	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21488899	A	A	21488899	3	1	84	1	0	0	0	0	1	0	0	0	3639	1291	45	4	553	4	CNKSR2	23	21488899	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2866337	21488899	133781661	1701	88308											
POLA1	5422	broad.mit.edu	37	chrX	24859838	24859838	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgatgctctacttggtgGcccagcacagctcactgatg	11	11	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24859838	A	A	24859838	3	1	84	1	0	0	0	0	1	0	0	0	12282	1203	42	4	3918	4	POLA1	23	24859838	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3370939	24859838	130410722	1702	88309											
FAM47A	158724	broad.mit.edu	37	chrX	34148840	34148840	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacgagtcttgggaggctccGagcggagactggacgtccga	17	10	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34148840	T	T	34148840	4	4	84	1	0	0	0	0	0	1	0	0	5620	1059	37	3	823	3	FAM47A	23	34148840	Nonsense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	9289002	34148840	121121720	1703	88310											
FAM47A	158724	broad.mit.edu	37	chrX	34150081	34150081	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgggctggagagagcttGgaaaatagggccgctttctt	15	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34150081	A	A	34150081	2	1	84	1	0	0	0	0	0	0	0	1	5620	1335	47	4		4	FAM47A	23	34150081	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1241	34150081	121120479	1704	88311											
CXorf59	286464	broad.mit.edu	37	chrX	36156083	36156083	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttgaaacagatgttatcCcttctgagagatggatagta	9	5	1	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36156083	G	G	36156083	3	3	84	1	0	0	0	0	1	0	0	0	4148	623	22	4	1084	4	CXorf59	23	36156083	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2006002	36156083	119114477	1705	88312											
FAM47C	442444	broad.mit.edu	37	chrX	37028542	37028542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagcctccagagactcgcGtatctcatctccgcccagag	10	16	2	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37028542	T	T	37028542	3	4	84	1	0	0	0	0	1	0	0	0	5622	1145	40	3	2061	3	FAM47C	23	37028542	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	872459	37028542	118242018	1706	88313											
FAM47C	442444	broad.mit.edu	37	chrX	37029164	37029164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taagaaggcaaacgagtgttCctcagggctgaagtacagca	12	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37029164	A	A	37029164	3	1	84	1	0	0	0	0	1	0	0	0	5622	855	30	3	2683	3	FAM47C	23	37029164	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	622	37029164	118241396	1707	88314											
XK	7504	broad.mit.edu	37	chrX	37587592	37587592	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcaggcagcaaaaaccCtgtgagccgataggaaagga	13	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37587592	T	T	37587592	2	4	84	1	0	0	0	0	0	0	0	1	17558	668	24	4		4	XK	23	37587592	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	558428	37587592	117682968	1708	88315											
CYBB	1536	broad.mit.edu	37	chrX	37652839	37652839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcttatcatagagtcagaGgctgtcccagaaacccagct	10	11	2	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37652839	A	A	37652839	1	1	84	0	1	0	0	0	0	0	0	0	4166	1015	35	4		4	CYBB	23	37652839	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	65247	37652839	117617721	1709	88316											
USP9X	8239	broad.mit.edu	37	chrX	41055569	41055569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgttgcatgggacaccGgcctctacttttcttcatta	8	11	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41055569	T	T	41055569	3	4	84	1	0	0	0	0	1	0	0	0	17217	1116	39	1	4145	1	USP9X	23	41055569	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3402730	41055569	114214991	1710	88317											
RGN	9104	broad.mit.edu	37	chrX	46940531	46940531	+	Translation_Start_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctgttaccttcaatagatCtcccctgcgaccatgtcttc	5	15	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46940531	G	G	46940531	1	3	84	1	0	0	0	0	0	0	0	0	13390	928	32	4		4	RGN	23	46940531	Translation_Start_Site	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5884962	46940531	108330029	1711	88318											
GRIPAP1	56850	broad.mit.edu	37	chrX	48841880	48841880	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggggccagggacagggtatGagccccctagttccagggaa	16	10	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48841880	C	C	48841880	1	2	84	0	1	0	0	0	0	0	0	0	6855	1305	45	4		4	GRIPAP1	23	48841880	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1901349	48841880	106428680	1712	88319											
GRIPAP1	56850	broad.mit.edu	37	chrX	48846310	48846310	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaactgggcacagaaggaCagatgtagatgggtcagttc	13	6	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48846310	G	G	48846310	1	3	84	0	1	0	0	0	0	0	0	0	6855	493	17	4		4	GRIPAP1	23	48846310	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4430	48846310	106424250	1713	88320											
GSPT2	23708	broad.mit.edu	37	chrX	51488070	51488070	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcactgtggtcctgggaaagCtggaatccgggtccattttt	13	9	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51488070	G	G	51488070	3	3	84	1	0	0	0	0	1	0	0	0	6893	796	28	4	1350	4	GSPT2	23	51488070	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2641760	51488070	103782490	1714	88321											
SSX7	280658	broad.mit.edu	37	chrX	52677069	52677069	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctttatttccatcttatgGactaggaatctggaactgag	8	7	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52677069	A	A	52677069	1	1	84	0	1	0	0	0	0	0	0	0	15327	1189	41	4		4	SSX7	23	52677069	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1188999	52677069	102593491	1715	88322											
XAGE3	170626	broad.mit.edu	37	chrX	52895450	52895450	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatagacattctttctttcCcttcccagcaccttgagtct	4	15	3	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52895450	T	T	52895450	1	4	84	0	1	0	0	0	0	0	0	0	17547	638	22	4		4	XAGE3	23	52895450	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	218381	52895450	102375110	1716	88323											
KDM5C	8242	broad.mit.edu	37	chrX	53230827	53230827	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggttcaggtctagcttctCtgggcaggcagccatcttgc	12	12	4	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53230827	T	T	53230827	3	4	84	1	0	0	0	0	1	0	0	0	8205	922	32	4	2866	4	KDM5C	23	53230827	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	335377	53230827	102039733	1717	88324											
ZC4H2	55906	broad.mit.edu	37	chrX	64140031	64140031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagagtcatgcgcagggCatccacatgttctttcagtg	11	12	3	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64140031	A	A	64140031	3	1	84	1	0	0	0	0	1	0	0	0	17704	710	25	3	377	3	ZC4H2	23	64140031	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	10909204	64140031	91130529	1718	88325											
AR	367	broad.mit.edu	37	chrX	66862970	66862970	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagaaaattcagcttcacActaactaacttgagcaatga	5	10	3	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66862970	T	T	66862970	1	4	84	0	1	0	0	0	0	0	0	0	838	174	6	5		5	AR	23	66862970	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	2722939	66862970	88407590	1719	88326											
AR	367	broad.mit.edu	37	chrX	66943742	66943742	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttcagatgtcttctgcCtgttataactctgcactact	5	13	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66943742	A	A	66943742	1	1	84	0	1	0	0	0	0	0	0	0	838	696	24	2		2	AR	23	66943742	3'UTR	SNP	C	TCGA-17-Z055-01A-01W-0747-08	80772	66943742	88326818	1720	88327											
MED12	9968	broad.mit.edu	37	chrX	70343155	70343155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccgagagatggaggtGgtggagggaccagagttgaa	20	4	0	4			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70343155	T	T	70343155	1	4	84	0	1	0	0	0	0	0	0	0	9521	1363	47	2		2	MED12	23	70343155	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3399413	70343155	84927405	1721	88328											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913901	77913901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaacaatataggaggctGctaagtcctccaccatcttt	7	11	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77913901	T	T	77913901	3	4	84	1	0	0	0	0	1	0	0	0	17717	1319	46	3	1414	3	ZCCHC5	23	77913901	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	7570746	77913901	77356659	1722	88329											
ZNF711	7552	broad.mit.edu	37	chrX	84526752	84526752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagactatccacacaggtGtgaattctgcaagaagggat	10	7	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84526752	T	T	84526752	3	4	84	1	0	0	0	0	1	0	0	0	18244	1377	48	3	2230	3	ZNF711	23	84526752	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	6612851	84526752	70743808	1723	88330											
POF1B	79983	broad.mit.edu	37	chrX	84559288	84559288	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgggaagtatttatcCtacagtactacagtactaag	8	8	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84559288	T	T	84559288	1	4	84	0	1	0	0	0	0	0	0	0	12277	696	24	4		4	POF1B	23	84559288	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	32536	84559288	70711272	1724	88331											
DACH2	117154	broad.mit.edu	37	chrX	85769355	85769355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgccttctgacccatgcaGtcccaggcctcttatcgcca	7	19	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85769355	T	T	85769355	3	4	84	1	0	0	0	0	1	0	0	0	4254	1029	36	3	611	3	DACH2	23	85769355	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1210067	85769355	69501205	1725	88332											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177555	89177555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagacaatgtacaaagcctGcccctgtggcccttgccaaa	8	15	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177555	T	T	89177555	2	4	84	1	0	0	0	0	0	0	0	1	15950	1306	46	3		3	TGIF2LX	23	89177555	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3408200	89177555	66093005	1726	88333											
DRP2	1821	broad.mit.edu	37	chrX	100505800	100505800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaacatctctggagaacaGgccaacccagcccctgctgg	11	14	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100505800	T	T	100505800	1	4	84	0	1	0	0	0	0	0	0	0	4804	1015	35	2		2	DRP2	23	100505800	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	11328245	100505800	54764760	1727	88334											
ARMCX2	9823	broad.mit.edu	37	chrX	100911627	100911627	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagcagctgctgcagcCccatctccaggacggaagcc	12	16	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100911627	A	A	100911627	2	1	84	1	0	0	0	0	0	0	0	1	964	610	22	2		2	ARMCX2	23	100911627	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	405827	100911627	54358933	1728	88335											
NXF5	55998	broad.mit.edu	37	chrX	101091693	101091693	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgggtgctcccacccacaAcatagcactaacctggaatt	8	13	0	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101091693	G	G	101091693	1	3	84	0	1	0	0	0	0	0	0	0	10881	58	2	5		5	NXF5	23	101091693	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	180066	101091693	54178867	1729	88336											
WBP5	51186	broad.mit.edu	37	chrX	102612793	102612793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagtttaaagaagatataCacaacaggcatttaagcaat	8	5	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102612793	A	A	102612793	3	1	84	1	0	0	0	0	1	0	0	0	17389	478	17	3	183	3	WBP5	23	102612793	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1521100	102612793	52657767	1730	88337											
TBC1D8B	54885	broad.mit.edu	37	chrX	106108791	106108791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttaatctttttaaagttGcgtgttgtatcacaagatgt	7	5	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106108791	T	T	106108791	3	4	84	1	0	0	0	0	1	0	0	0	15748	1310	46	3	2479	3	TBC1D8B	23	106108791	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3495998	106108791	49161769	1731	88338											
COL4A6	1288	broad.mit.edu	37	chrX	107438493	107438493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagcgaatgttcctagacCtagcttaacgactttttttt	7	8	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107438493	A	A	107438493	1	1	84	0	1	0	0	0	0	0	0	0	3727	696	24	2		2	COL4A6	23	107438493	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1329702	107438493	47832067	1732	88339											
COL4A6	1288	broad.mit.edu	37	chrX	107554108	107554108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtgaaccaagaagcaatGttgtcccagcagacctaact	8	11	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107554108	T	T	107554108	1	4	84	0	1	0	0	0	0	0	0	0	3727	1392	48	3		3	COL4A6	23	107554108	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	115615	107554108	47716452	1733	88340											
COL4A5	1287	broad.mit.edu	37	chrX	107920671	107920671	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgatattttaaaagcctgActtttatgctactcttaaca	4	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107920671	C	C	107920671	1	2	84	0	1	0	0	0	0	0	0	0	3726	290	10	5		5	COL4A5	23	107920671	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	366563	107920671	47349889	1734	88341											
COL4A5	1287	broad.mit.edu	37	chrX	107923871	107923871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaccttcctcccctcgctGcaatttttttgtaacattaa	3	13	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107923871	T	T	107923871	1	4	84	0	1	0	0	0	0	0	0	0	3726	1334	46	3		3	COL4A5	23	107923871	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	3200	107923871	47346689	1735	88342											
RGAG1	57529	broad.mit.edu	37	chrX	109694148	109694148	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagactctggggcactttcCccattgctaatgccagcctc	8	15	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109694148	A	A	109694148	2	1	84	1	0	0	0	0	0	0	0	1	13382	610	22	2		2	RGAG1	23	109694148	Silent	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1770277	109694148	45576412	1736	88343											
CHRDL1	91851	broad.mit.edu	37	chrX	110002839	110002839	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgagttgagttgggtgaaGagggaaatggagaaccacag	17	3	0	5			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110002839	C	C	110002839	1	2	84	0	1	0	0	0	0	0	0	0	3404	957	33	4		4	CHRDL1	23	110002839	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	308691	110002839	45267721	1737	88344											
LHFPL1	340596	broad.mit.edu	37	chrX	111914406	111914406	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggatggcattgaagctGgcatagcgcccacattcttc	11	11	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111914406	T	T	111914406	2	4	84	1	0	0	0	0	0	0	0	1	8836	1335	47	2		2	LHFPL1	23	111914406	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1911567	111914406	43356154	1738	88345											
LUZP4	51213	broad.mit.edu	37	chrX	114541017	114541017	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatggccaatacaagagatCtcatggtcaatctgagagat	9	8	4	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114541017	T	T	114541017	3	4	84	1	0	0	0	0	1	0	0	0	9175	913	32	4	604	4	LUZP4	23	114541017	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	2626611	114541017	40729543	1739	88346											
STAG2	10735	broad.mit.edu	37	chrX	123217307	123217307	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttttaaagagcctaatccGcaaggggagagccatccacc	10	12	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123217307	A	A	123217307	2	1	84	1	0	0	0	0	0	0	0	1	15361	1074	38	4		4	STAG2	23	123217307	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	8676290	123217307	32053253	1740	88347											
XPNPEP2	7512	broad.mit.edu	37	chrX	128876048	128876048	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctctaggaactagctggtCcccaaatgaccctggatttt	8	12	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128876048	A	A	128876048	1	1	84	0	1	0	0	0	0	0	0	0	17570	870	30	3		3	XPNPEP2	23	128876048	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	5658741	128876048	26394512	1741	88348											
ARHGAP36	158763	broad.mit.edu	37	chrX	130215894	130215894	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaattcaaacctgacagaggTaagctgtaccccggattgtg	11	9	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130215894	A	A	130215894	5	1	84	1	0	0	0	0	0	0	1	0	885	1652	57	5	257	5	ARHGAP36	23	130215894	Splice_Site	SNP	T	TCGA-17-Z055-01A-01W-0747-08	1339846	130215894	25054666	1742	88349											
IGSF1	3547	broad.mit.edu	37	chrX	130423225	130423225	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgatgttggagattctccAgtgagctcctccagatgcag	11	11	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130423225	T	T	130423225	1	4	84	0	1	0	0	0	0	0	0	0	7666	203	7	5		5	IGSF1	23	130423225	5'UTR	SNP	A	TCGA-17-Z055-01A-01W-0747-08	207331	130423225	24847335	1743	88350											
OR13H1	347468	broad.mit.edu	37	chrX	130678698	130678699	+	Frame_Shift_Ins	INS	-	A	A													ggtttgttctcctctcctacINSatacgaattgctatggctat							TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130678699	A	A	130678698	7	5	84	1	0	1	1	0	0	0	0	0	11037	489	17	0	653	0	OR13H1	23	130678698	Frame_Shift_Ins	INS	-	TCGA-17-Z055-01A-01W-0747-08	255473	130678698	24591862	1744	88351											
ZNF75D	7626	broad.mit.edu	37	chrX	134425340	134425340	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcctaggcaatagggaCaagcagaggcaaggccacag	14	9	0	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134425340	G	G	134425340	1	3	84	0	1	0	0	0	0	0	0	0	18263	493	17	4		4	ZNF75D	23	134425340	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3746642	134425340	20845220	1745	88352											
FHL1	2273	broad.mit.edu	37	chrX	135290120	135290120	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgcgtgaagtgcaacaaGgtatgctttcaagggagttc	12	7	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135290120	A	A	135290120	2	1	84	1	0	0	0	0	0	0	0	1	5935	1014	35	4		4	FHL1	23	135290120	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	864780	135290120	19980440	1746	88353											
ATP11C	286410	broad.mit.edu	37	chrX	138828127	138828127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttataatgaagggggctacCcttaatggcctgacagattt	11	7	0	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138828127	A	A	138828127	1	1	84	0	1	0	0	0	0	0	0	0	1125	638	22	2		2	ATP11C	23	138828127	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	3538007	138828127	16442433	1747	88354											
MAGEC1	9947	broad.mit.edu	37	chrX	140995949	140995949	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagttggcgcggtttcttcTcctcaaatatcaagtgaagc	10	10	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140995949	C	C	140995949	3	2	84	1	0	0	0	0	1	0	0	0	9272	1551	54	5	2765	5	MAGEC1	23	140995949	Missense_Mutation	SNP	T	TCGA-17-Z055-01A-01W-0747-08	2167822	140995949	14274611	1748	88355											
SPANXN2	494119	broad.mit.edu	37	chrX	142795129	142795129	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaatttggtttctccatGtttgactagtcctccccacc	6	14	1	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142795129	T	T	142795129	1	4	84	0	1	0	0	0	0	0	0	0	15107	1392	48	3		3	SPANXN2	23	142795129	3'UTR	SNP	G	TCGA-17-Z055-01A-01W-0747-08	1799180	142795129	12475431	1749	88356											
FMR1NB	158521	broad.mit.edu	37	chrX	147062975	147062975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataggagaagtcaccgtgCcatgcgtgtggctcacttag	13	9	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147062975	A	A	147062975	3	1	84	1	0	0	0	0	1	0	0	0	6019	739	26	3	55	3	FMR1NB	23	147062975	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	4267846	147062975	8207585	1750	88357											
MAGEA11	4110	broad.mit.edu	37	chrX	148796183	148796183	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgacttccagtcaacagaaAgagccccatatggtccacaa	7	13	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148796183	G	G	148796183	3	3	84	1	0	0	0	0	1	0	0	0	9253	64	3	5	158	5	MAGEA11	23	148796183	Missense_Mutation	SNP	A	TCGA-17-Z055-01A-01W-0747-08	1733208	148796183	6474377	1751	88358											
MAMLD1	10046	broad.mit.edu	37	chrX	149638912	149638912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgctgccactgccaccacCaccacccccattcagccccc	4	25	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149638912	A	A	149638912	3	1	84	1	0	0	0	0	1	0	0	0	9300	594	21	2	1077	2	MAMLD1	23	149638912	Missense_Mutation	SNP	C	TCGA-17-Z055-01A-01W-0747-08	842729	149638912	5631648	1752	88359											
MAMLD1	10046	broad.mit.edu	37	chrX	149639109	149639109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactcaacagccgcagttcGgccctcagagctccattctt	7	16	4	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149639109	T	T	149639109	3	4	84	1	0	0	0	0	1	0	0	0	9300	1116	39	1	1274	1	MAMLD1	23	149639109	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08	197	149639109	5631451	1753	88360											
MTM1	4534	broad.mit.edu	37	chrX	149765120	149765120	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcccgcttactctttagcAgtcaggcttagacaaatagg	9	10	2	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149765120	T	T	149765120	1	4	84	0	1	0	0	0	0	0	0	0	10031	203	7	5		5	MTM1	23	149765120	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	126011	149765120	5505440	1754	88361											
VMA21	203547	broad.mit.edu	37	chrX	150573464	150573464	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgccgtccatgtggtgctGgccctctttgtgtatgtggc	14	11	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150573464	T	T	150573464	2	4	84	1	0	0	0	0	0	0	0	1	17302	1335	47	2		2	VMA21	23	150573464	Silent	SNP	G	TCGA-17-Z055-01A-01W-0747-08	808344	150573464	4697096	1755	88362											
L1CAM	3897	broad.mit.edu	37	chrX	153132055	153132055	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggacatgggctggggtGgaagcaggcgagctcaaccg	19	8	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153132055	A	A	153132055	1	1	84	0	1	0	0	0	0	0	0	0	8660	1363	47	4		4	L1CAM	23	153132055	Intron	SNP	G	TCGA-17-Z055-01A-01W-0747-08	2558591	153132055	2138505	1756	88363											
PCDH11Y	83259	broad.mit.edu	37	chrY	4968734	4968734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcgaggtacctgtgtccGtacacaccagaccggtaggt	11	13	0	1			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4968734	T	T	4968734	3	4	84	1	0	0	0	0	1	0	0	0	11603	1145	40	3	3157	3	PCDH11Y	24	4968734	Missense_Mutation	SNP	G	TCGA-17-Z055-01A-01W-0747-08		4968734	54404832	1757	88364											
TSPY2	64591	broad.mit.edu	37	chrY	6115596	6115596	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagctttctccaccttgtcCtgacaggtggaagaagagaa	10	9	1	3			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6115596	T	T	6115596	1	4	84	0	1	0	0	0	0	0	0	0	16783	696	24	4		4	TSPY2	24	6115596	Intron	SNP	C	TCGA-17-Z055-01A-01W-0747-08	1146862	6115596	53257970	1758	88365											
TBL1Y	90665	broad.mit.edu	37	chrY	6948720	6948720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcattgttgtaaatccAtagagctatgcacacagtga	8	8	1	2			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6948720	T	T	6948720	1	4	84	0	1	0	0	0	0	0	0	0	15763	232	8	5		5	TBL1Y	24	6948720	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	833124	6948720	52424846	1759	88366											
DDX3Y	8653	broad.mit.edu	37	chrY	15027209	15027209	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattacttttgttgtattttActagtactgctttaacttca	5	6	1	0			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15027209	G	G	15027209	1	3	84	0	1	0	0	0	0	0	0	0	4392	406	14	5		5	DDX3Y	24	15027209	Intron	SNP	A	TCGA-17-Z055-01A-01W-0747-08	8078489	15027209	44346357	1760	88367											
OR4F5	79501	broad.mit.edu	37	chr1	69516	69516	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcattatggctgtcacatgGggaattggctttctccattc	11	9	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69516	A	A	69516	4	1	85	1	0	0	0	0	0	1	0	0	11159	1241	43	4	428	4	OR4F5	1	69516	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08		69516	249181105	1	88368											
PLEKHG5	57449	broad.mit.edu	37	chr1	6527727	6527727	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggcactcctcaggcccCttcactgctgcccaccacag	7	21	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6527727	T	T	6527727	1	4	85	0	1	0	0	0	0	0	0	0	12168	696	24	4		4	PLEKHG5	1	6527727	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6458211	6527727	242722894	2	88369											
UTS2	10911	broad.mit.edu	37	chr1	7910793	7910793	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatattccaaaatagagcttTacctcttctagatgaggaca	6	8	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7910793	C	C	7910793	1	2	85	0	1	0	0	0	0	0	0	0	17231	1769	61	5		5	UTS2	1	7910793	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1383066	7910793	241339828	3	88370											
ENO1	2023	broad.mit.edu	37	chr1	8923352	8923352	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtatcttcagtctcccccGaacgatgagacaccatgacg	9	13	3	2	rs143592223		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8923352	A	A	8923352	3	1	85	1	0	0	0	0	1	0	0	0	5163	1059	37	4	198	4	ENO1	1	8923352	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1012559	8923352	240327269	4	88371											
CA6	765	broad.mit.edu	37	chr1	9022659	9022659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaggtgaagaattaccCtgaaaacacttattacagca	7	9	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9022659	A	A	9022659	3	1	85	1	0	0	0	0	1	0	0	0	2547	681	24	2	533	2	CA6	1	9022659	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	99307	9022659	240227962	5	88372											
TNFRSF8	943	broad.mit.edu	37	chr1	12164497	12164497	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtctgcgaatgtcgaccCggcatgttctgttccacgtc	11	13	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12164497	T	T	12164497	2	4	85	1	0	0	0	0	0	0	0	1	16422	639	23	4		4	TNFRSF8	1	12164497	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3141838	12164497	237086124	6	88373											
CASP9	842	broad.mit.edu	37	chr1	15819328	15819328	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaagagcagaccctgtGccggctgcaaagtccttgag	13	10	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15819328	T	T	15819328	1	4	85	0	1	0	0	0	0	0	0	0	2705	1334	46	3		3	CASP9	1	15819328	3'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3654831	15819328	233431293	7	88374											
ATP13A2	23400	broad.mit.edu	37	chr1	17323644	17323644	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcccctccggcagtgCcgtcttcagcactggaatgc	10	18	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17323644	T	T	17323644	3	4	85	1	0	0	0	0	1	0	0	0	1128	739	26	4	2784	4	ATP13A2	1	17323644	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1504316	17323644	231926977	8	88375											
TMCO4	255104	broad.mit.edu	37	chr1	20009735	20009735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggccaatttggaggtgtctCcggatatgggaccctgggtt	15	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20009735	T	T	20009735	3	4	85	1	0	0	0	0	1	0	0	0	16121	855	30	4	205	4	TMCO4	1	20009735	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2686091	20009735	229240886	9	88376											
RNF186	54546	broad.mit.edu	37	chr1	20140898	20140898	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagggctgcagggatagcctCatcagagggcactcaggcaa	14	10	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20140898	T	T	20140898	1	4	85	0	1	0	0	0	0	0	0	0	13580	841	29	4		4	RNF186	1	20140898	3'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	131163	20140898	229109723	10	88377											
EPHA8	2046	broad.mit.edu	37	chr1	22895844	22895844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcacgtatccggctcatGgggtgagtgatgggcactgg	17	9	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22895844	T	T	22895844	3	4	85	1	0	0	0	0	1	0	0	0	5215	1348	47	2	163	2	EPHA8	1	22895844	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2754946	22895844	226354777	11	88378											
FGR	2268	broad.mit.edu	37	chr1	27939493	27939493	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctccaggaaggactgcaGgtactcgaaggtaggcctct	13	11	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27939493	A	A	27939493	2	1	85	1	0	0	0	0	0	0	0	1	5931	991	35	4		4	FGR	1	27939493	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5043649	27939493	221311128	12	88379											
ZCCHC17	51538	broad.mit.edu	37	chr1	31810024	31810024	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttcttcttgtgcccaggtCtggtccatcgaactcatatg	8	12	5	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31810024	G	G	31810024	3	3	85	1	0	0	0	0	1	0	0	0	17711	912	32	4	137	4	ZCCHC17	1	31810024	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3870531	31810024	217440597	13	88380											
BSDC1	55108	broad.mit.edu	37	chr1	32843938	32843938	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtttgtgtggggtctGtgtccccagccttatcagtc	14	9	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32843938	A	A	32843938	1	1	85	0	1	0	0	0	0	0	0	0	1537	1392	48	4		4	BSDC1	1	32843938	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1033914	32843938	216406683	14	88381											
ADC	113451	broad.mit.edu	37	chr1	33562528	33562528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcttcagatagtggttGgctgagcaggatctggtttt	14	5	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33562528	T	T	33562528	1	4	85	0	1	0	0	0	0	0	0	0	287	1363	47	2		2	ADC	1	33562528	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	718590	33562528	215688093	15	88382											
ZMYM6	9204	broad.mit.edu	37	chr1	35485057	35485057	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagagctgagtagatcctgTcttatgatatgcagtttggc	12	6	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35485057	A	A	35485057	3	1	85	1	0	0	0	0	1	0	0	0	17830	1667	58	5	3704	5	ZMYM6	1	35485057	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1922529	35485057	213765564	16	88383											
KIAA0319L	79932	broad.mit.edu	37	chr1	35909843	35909843	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcttgagcatcgctgccaCctcatggcctttgaagatct	8	13	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35909843	T	T	35909843	3	4	85	1	0	0	0	0	1	0	0	0	8239	507	18	4	594	4	KIAA0319L	1	35909843	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	424786	35909843	213340778	17	88384											
ADPRHL2	54936	broad.mit.edu	37	chr1	36558896	36558896	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctactatgggatggatcAggtgccagagagctggcagc	15	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36558896	T	T	36558896	3	4	85	1	0	0	0	0	1	0	0	0	333	188	7	5	1023	5	ADPRHL2	1	36558896	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	649053	36558896	212691725	18	88385											
INPP5B	3633	broad.mit.edu	37	chr1	38409252	38409252	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttactttacaccattcttcTttctctgaaaatcaggcacc	3	13	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38409252	A	A	38409252	1	1	85	0	1	0	0	0	0	0	0	0	7825	1624	56	5		5	INPP5B	1	38409252	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1850356	38409252	210841369	19	88386											
MACF1	23499	broad.mit.edu	37	chr1	39800952	39800952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttaaacttaaagaagtgGctagaaataacatgggaaat	8	3	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39800952	A	A	39800952	3	1	85	1	0	0	0	0	1	0	0	0	9232	1203	42	4	8783	4	MACF1	1	39800952	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1391700	39800952	209449669	20	88387											
MACF1	23499	broad.mit.edu	37	chr1	39926448	39926448	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taacacgtcaggagtttatcGatggcattttagcatccagt	9	8	1	0	rs150495633		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39926448	C	C	39926448	3	2	85	1	0	0	0	0	1	0	0	0	9232	1058	37	4	21829	4	MACF1	1	39926448	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	125496	39926448	209324173	21	88388											
COL9A2	1298	broad.mit.edu	37	chr1	40775972	40775972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccatgcctgggtagccCctgatgccctggggaccctg	13	16	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40775972	A	A	40775972	3	1	85	1	0	0	0	0	1	0	0	0	3740	622	22	2	1443	2	COL9A2	1	40775972	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	849524	40775972	208474649	22	88389											
GUCA2B	2981	broad.mit.edu	37	chr1	42620408	42620408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgagtgacctggaggcaCagtgggcacccagcccccgc	14	15	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42620408	A	A	42620408	3	1	85	1	0	0	0	0	1	0	0	0	6957	479	17	3	154	3	GUCA2B	1	42620408	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1844436	42620408	206630213	23	88390											
MPL	4352	broad.mit.edu	37	chr1	43804244	43804244	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttgccccctgagttccCagagcatgccccactttgga	10	15	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43804244	T	T	43804244	4	4	85	1	0	0	0	0	0	1	0	0	9824	595	21	4	254	4	MPL	1	43804244	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1183836	43804244	205446377	24	88391											
KIAA0467	23334	broad.mit.edu	37	chr1	43887636	43887636	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctgggctgtagcctcAaaccactgctgtctctgact	10	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43887636	T	T	43887636	1	4	85	0	1	0	0	0	0	0	0	0	8248	145	5	5		5	KIAA0467	1	43887636	5'Flank	SNP	A	TCGA-17-Z056-01A-01W-0747-08	83392	43887636	205362985	25	88392											
KLF17	128209	broad.mit.edu	37	chr1	44584567	44584567	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtagagagtctagaccCcacccagtcttcatgtacgg	9	12	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44584567	A	A	44584567	1	1	85	0	1	0	0	0	0	0	0	0	8416	638	22	2		2	KLF17	1	44584567	5'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	696931	44584567	204666054	26	88393											
HECTD3	79654	broad.mit.edu	37	chr1	45476639	45476639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcaggcgccgcgccggagCtcaatgctgtcgcgggcggc	17	15	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45476639	A	A	45476639	3	1	85	1	0	0	0	0	1	0	0	0	7108	796	28	3	2378	3	HECTD3	1	45476639	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	892072	45476639	203773982	27	88394											
STIL	6491	broad.mit.edu	37	chr1	47716840	47716840	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtaactgtctgagacgttTtacatctaagaaggtgccta	10	7	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47716840	A	A	47716840	4	1	85	1	0	0	0	0	0	1	0	0	15400	1850	64	5	35	5	STIL	1	47716840	Nonsense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2240201	47716840	201533781	28	88395											
USP24	23358	broad.mit.edu	37	chr1	55637289	55637289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctccaaacacttctgcCcaattcctttgagacacttt	3	16	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55637289	A	A	55637289	3	1	85	1	0	0	0	0	1	0	0	0	17181	624	22	2	7353	2	USP24	1	55637289	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7920449	55637289	193613332	29	88396											
INADL	10207	broad.mit.edu	37	chr1	62241001	62241001	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagttcctggaggattagcaGatcgagtaagtcaaccttcc	10	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62241001	T	T	62241001	3	4	85	1	0	0	0	0	1	0	0	0	7801	942	33	3	866	3	INADL	1	62241001	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	6603712	62241001	187009620	30	88397											
INADL	10207	broad.mit.edu	37	chr1	62257135	62257135	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaggtaaatgaatcatttCtattttatatttggaaattg	6	3	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62257135	T	T	62257135	1	4	85	0	1	0	0	0	0	0	0	0	7801	928	32	4		4	INADL	1	62257135	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	16134	62257135	186993486	31	88398											
INADL	10207	broad.mit.edu	37	chr1	62545190	62545190	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttcacaagagataccattAgcaccagcttcatcatacca	5	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62545190	T	T	62545190	3	4	85	1	0	0	0	0	1	0	0	0	7801	417	15	5	4316	5	INADL	1	62545190	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	288055	62545190	186705431	32	88399											
CACHD1	57685	broad.mit.edu	37	chr1	65117912	65117912	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggaattgtaggtgtggacGtgaatctggcttacattctt	13	5	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65117912	A	A	65117912	3	1	85	1	0	0	0	0	1	0	0	0	2563	1145	40	4	1344	4	CACHD1	1	65117912	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2572722	65117912	184132709	33	88400											
WLS	79971	broad.mit.edu	37	chr1	68628761	68628761	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctcttgactttgtgcttatCcacaagggccatactttatg	7	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68628761	G	G	68628761	1	3	85	0	1	0	0	0	0	0	0	0	17503	870	30	4		4	WLS	1	68628761	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3510849	68628761	180621860	34	88401											
LRRIQ3	127255	broad.mit.edu	37	chr1	74507414	74507415	+	Nonsense_Mutation	DNP	CC	AA	AA													aaactctttcatactccgctCcaatcgtatgtcttttttaa							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74507415	AA	AA	74507414	4	1	85	1	0	0	0	0	0	1	0	0	9117	864	30	3	681	3	LRRIQ3	1	74507414	Nonsense_Mutation	DNP	CC	TCGA-17-Z056-01A-01W-0747-08	5878653	74507414	174743207	35	88402											
LHX8	431707	broad.mit.edu	37	chr1	75622448	75622448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatagaacttttataaaagCtgagttacatttatgcggtg	8	5	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75622448	A	A	75622448	1	1	85	0	1	0	0	0	0	0	0	0	8848	812	28	3		3	LHX8	1	75622448	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1115034	75622448	173628173	36	88403											
ASB17	127247	broad.mit.edu	37	chr1	76387707	76387707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtattctttcctttacaGttgaatcttaagattcacta	4	8	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76387707	T	T	76387707	1	4	85	0	1	0	0	0	0	0	0	0	1025	1044	36	3		3	ASB17	1	76387707	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	765259	76387707	172862914	37	88404											
USP33	23032	broad.mit.edu	37	chr1	78178807	78178807	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacatagcacaaggagcatCtctgaaataatccaaacccc	5	13	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78178807	T	T	78178807	1	4	85	0	1	0	0	0	0	0	0	0	17191	928	32	4		4	USP33	1	78178807	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1791100	78178807	171071814	38	88405											
FUBP1	8880	broad.mit.edu	37	chr1	78430612	78430612	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcagcaccagtgttctgCggcccgtcttgaatcataac	9	12	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78430612	A	A	78430612	2	1	85	1	0	0	0	0	0	0	0	1	6152	755	27	3		3	FUBP1	1	78430612	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	251805	78430612	170820009	39	88406											
IFI44L	10964	broad.mit.edu	37	chr1	79093737	79093737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggttgaaagatgcagccGtcagggatgtactataacaa	11	6	1	2	rs149202070	byFrequency	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79093737	T	T	79093737	3	4	85	1	0	0	0	0	1	0	0	0	7588	1145	40	3	139	3	IFI44L	1	79093737	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	663125	79093737	170156884	40	88407											
TTLL7	79739	broad.mit.edu	37	chr1	84355957	84355957	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatatctctataactaaatAgtaaaatattaaaaatgacg	5	4	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84355957	T	T	84355957	1	4	85	0	1	0	0	0	0	0	0	0	16858	435	15	5		5	TTLL7	1	84355957	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	5262220	84355957	164894664	41	88408											
COL24A1	255631	broad.mit.edu	37	chr1	86523669	86523669	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctaaaccctggtgtaaaCaaaagacattgtcatcatac	6	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86523669	T	T	86523669	1	4	85	0	1	0	0	0	0	0	0	0	3715	493	17	4		4	COL24A1	1	86523669	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2167712	86523669	162726952	42	88409											
CLCA2	9635	broad.mit.edu	37	chr1	86905931	86905931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttacccactgtgctcaGcagtggttcaacaattcact	7	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86905931	T	T	86905931	3	4	85	1	0	0	0	0	1	0	0	0	3489	971	34	3	1334	3	CLCA2	1	86905931	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	382262	86905931	162344690	43	88410											
TGFBR3	7049	broad.mit.edu	37	chr1	92161366	92161366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaaccgatacacacaaCtttttggttagtctgcatca	7	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92161366	A	A	92161366	1	1	85	0	1	0	0	0	0	0	0	0	15946	580	20	3		3	TGFBR3	1	92161366	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5255435	92161366	157089255	44	88411											
EVI5	7813	broad.mit.edu	37	chr1	93091298	93091298	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttcaaactcttacaaattgGatatttcggttttactctct	4	9	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93091298	C	C	93091298	1	2	85	0	1	0	0	0	0	0	0	0	5331	1189	41	4		4	EVI5	1	93091298	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	929932	93091298	156159323	45	88412											
PTBP2	58155	broad.mit.edu	37	chr1	97235391	97235391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttaggcttaccttttgGtaaggtgaccaacatcctta	8	9	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97235391	T	T	97235391	3	4	85	1	0	0	0	0	1	0	0	0	12832	1261	44	3	262	3	PTBP2	1	97235391	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4144093	97235391	152015230	46	88413											
LPPR4	9890	broad.mit.edu	37	chr1	99753629	99753629	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaccggagtcttagcatgCcgtacattgaaccaacccag	9	12	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99753629	G	G	99753629	3	3	85	1	0	0	0	0	1	0	0	0	9014	739	26	4	337	4	LPPR4	1	99753629	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2518238	99753629	149496992	47	88414											
LPPR4	9890	broad.mit.edu	37	chr1	99772444	99772444	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtccatttcttcttccCgcgactccaccctgcggaga	8	17	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99772444	T	T	99772444	3	4	85	1	0	0	0	0	1	0	0	0	9014	652	23	4	2196	4	LPPR4	1	99772444	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	18815	99772444	149478177	48	88415											
LPPR4	9890	broad.mit.edu	37	chr1	99772455	99772455	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttcccgcgactccacCctgcggagaaagggcaatat	9	14	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99772455	A	A	99772455	2	1	85	1	0	0	0	0	0	0	0	1	9014	610	22	2		2	LPPR4	1	99772455	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	11	99772455	149478166	49	88416											
OLFM3	118427	broad.mit.edu	37	chr1	102269892	102269892	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagctcgatctcttgcatTgtagtcaagcatggatatgt	11	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102269892	A	A	102269892	3	1	85	1	0	0	0	0	1	0	0	0	10949	1812	63	5	101	5	OLFM3	1	102269892	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2497437	102269892	146980729	50	88417											
COL11A1	1301	broad.mit.edu	37	chr1	103491099	103491099	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttgtcccagaaacatgcCtaggagcttctgtctggtaa	9	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103491099	T	T	103491099	3	4	85	1	0	0	0	0	1	0	0	0	3699	681	24	4	4696	4	COL11A1	1	103491099	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1221207	103491099	145759522	51	88418											
VAV3	10451	broad.mit.edu	37	chr1	108185408	108185408	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccaaacaagttttagaattGagaaaacaatgatgcatgaa	8	5	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108185408	C	C	108185408	1	2	85	0	1	0	0	0	0	0	0	0	17260	1305	45	4		4	VAV3	1	108185408	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4694309	108185408	141065213	52	88419											
C1orf59	113802	broad.mit.edu	37	chr1	109191326	109191326	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcggttcaacttgggataCgcaaggagtctctgcagagg	14	8	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109191326	A	A	109191326	2	1	85	1	0	0	0	0	0	0	0	1	2073	523	19	3		3	C1orf59	1	109191326	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1005918	109191326	140059295	53	88420											
FNDC7	163479	broad.mit.edu	37	chr1	109270445	109270445	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctccctgttgtcctaGtgacattaaccccgtgttgg	9	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109270445	C	C	109270445	3	2	85	1	0	0	0	0	1	0	0	0	6031	1029	36	4	1153	4	FNDC7	1	109270445	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	79119	109270445	139980176	54	88421											
SORT1	6272	broad.mit.edu	37	chr1	109860652	109860652	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaccgttaagtgactagCaatgaagggttatgtggggt	15	4	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109860652	T	T	109860652	1	4	85	0	1	0	0	0	0	0	0	0	15049	725	25	4		4	SORT1	1	109860652	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	590207	109860652	139389969	55	88422											
CD53	963	broad.mit.edu	37	chr1	111437688	111437688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtcatttgtgagtacagGtggaatcctcttcagatcag	10	9	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111437688	T	T	111437688	1	4	85	0	1	0	0	0	0	0	0	0	3053	1276	44	3		3	CD53	1	111437688	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1577036	111437688	137812933	56	88423											
TRIM33	51592	broad.mit.edu	37	chr1	115005674	115005674	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttaagaagaagaatgacTttacaagcactttttatagt	7	5	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115005674	G	G	115005674	1	3	85	0	1	0	0	0	0	0	0	0	16631	1624	56	5		5	TRIM33	1	115005674	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3567986	115005674	134244947	57	88424											
AMPD1	270	broad.mit.edu	37	chr1	115220954	115220954	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattgccgtttcaacctacAgcatgaacatccagagaatc	6	12	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115220954	G	G	115220954	2	3	85	1	0	0	0	0	0	0	0	1	585	202	7	5		5	AMPD1	1	115220954	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	215280	115220954	134029667	58	88425											
TTF2	8458	broad.mit.edu	37	chr1	117620448	117620448	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaaggagggtaagaaacaGatacagggccatttgtagct	12	6	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117620448	C	C	117620448	1	2	85	0	1	0	0	0	0	0	0	0	16845	957	33	4		4	TTF2	1	117620448	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2399494	117620448	131630173	59	88426											
TTF2	8458	broad.mit.edu	37	chr1	117620740	117620740	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgaaactgctggcagagaGactttctgagatacctttcc	9	10	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117620740	C	C	117620740	1	2	85	0	1	0	0	0	0	0	0	0	16845	957	33	4		4	TTF2	1	117620740	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	292	117620740	131629881	60	88427											
TTF2	8458	broad.mit.edu	37	chr1	117634030	117634030	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctaataatccattcagtaGaggtaagctgtaggactctc	8	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117634030	A	A	117634030	3	1	85	1	0	0	0	0	1	0	0	0	16845	942	33	4	2731	4	TTF2	1	117634030	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	13290	117634030	131616591	61	88428											
SPAG17	200162	broad.mit.edu	37	chr1	118512645	118512645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagtcacttgcatgcacgCaagcacacacaacagatgac	7	13	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118512645	A	A	118512645	1	1	85	0	1	0	0	0	0	0	0	0	15095	725	25	3		3	SPAG17	1	118512645	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	878615	118512645	130737976	62	88429											
SETDB1	9869	broad.mit.edu	37	chr1	150913870	150913870	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaagttcatggatgctgtCaacaagaagagcagttccca	10	9	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150913870	T	T	150913870	2	4	85	1	0	0	0	0	0	0	0	1	14251	813	29	4		4	SETDB1	1	150913870	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	32401225	150913870	98336751	63	88430											
TCHH	7062	broad.mit.edu	37	chr1	152080152	152080152	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtggcaaactgctcctcCgcccggtactgccggtctcg	12	16	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152080152	G	G	152080152	2	3	85	1	0	0	0	0	0	0	0	1	15822	639	23	4		4	TCHH	1	152080152	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1166282	152080152	97170469	64	88431											
FLG	2312	broad.mit.edu	37	chr1	152280985	152280985	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttgggatgctgagtgcctgGagctgtcttgtgcctgatca	14	9	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152280985	C	C	152280985	3	2	85	1	0	0	0	0	1	0	0	0	5979	1174	41	4	5812	4	FLG	1	152280985	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	200833	152280985	96969636	65	88432											
FLG2	388698	broad.mit.edu	37	chr1	152328575	152328575	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtccaaagccagatgtctCtctagacccatattggccat	7	12	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152328575	G	G	152328575	3	3	85	1	0	0	0	0	1	0	0	0	5980	922	32	4	5492	4	FLG2	1	152328575	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	47590	152328575	96922046	66	88433											
LCE2A	353139	broad.mit.edu	37	chr1	152671340	152671340	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttcacagctaaagggtttGactatttcgaatttcaggtt	8	6	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152671340	T	T	152671340	1	4	85	0	1	0	0	0	0	0	0	0	8737	1305	45	3		3	LCE2A	1	152671340	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	342765	152671340	96579281	67	88434											
PMVK	10654	broad.mit.edu	37	chr1	154901730	154901730	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacagcggaagagccatcCctcaccctcacctgcctccc	6	19	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154901730	A	A	154901730	1	1	85	0	1	0	0	0	0	0	0	0	12239	638	22	2		2	PMVK	1	154901730	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2230390	154901730	94348891	68	88435											
DCST2	127579	broad.mit.edu	37	chr1	155002518	155002518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggtggggggaagccctGgcctccctggcttgggctct	19	12	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155002518	T	T	155002518	1	4	85	0	1	0	0	0	0	0	0	0	4336	1363	47	2		2	DCST2	1	155002518	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	100788	155002518	94248103	69	88436											
CD1E	913	broad.mit.edu	37	chr1	158324257	158324257	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctttgccaaccacagctGggcacacagtgagggctcag	11	14	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158324257	A	A	158324257	4	1	85	1	0	0	0	0	0	1	0	0	3008	1357	47	4	155	4	CD1E	1	158324257	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3321739	158324257	90926364	70	88437											
OR6Y1	391112	broad.mit.edu	37	chr1	158517838	158517838	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtcgtgttggaaaccccaGaagaatgaaacgtgttgtca	12	7	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517838	T	T	158517838	3	4	85	1	0	0	0	0	1	0	0	0	11307	933	33	3	921	3	OR6Y1	1	158517838	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	193581	158517838	90732783	71	88438											
OR10Z1	128368	broad.mit.edu	37	chr1	158576519	158576519	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctatctcctatgtgggctgTgctgcccagatgttcttttc	10	11	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158576519	C	C	158576519	2	2	85	1	0	0	0	0	0	0	0	1	11017	1702	59	5		5	OR10Z1	1	158576519	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	58681	158576519	90674102	72	88439											
SPTA1	6708	broad.mit.edu	37	chr1	158617372	158617372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttctgggcctcatttaGgctctccttacgatcctttg	8	11	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158617372	T	T	158617372	3	4	85	1	0	0	0	0	1	0	0	0	15234	991	35	2	3510	2	SPTA1	1	158617372	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	40853	158617372	90633249	73	88440											
SPTA1	6708	broad.mit.edu	37	chr1	158650571	158650571	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaacatttaggagtttctgTaggtcaaaaactcaaaactc	6	8	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158650571	A	A	158650571	1	1	85	0	1	0	0	0	0	0	0	0	15234	1653	57	5		5	SPTA1	1	158650571	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	33199	158650571	90600050	74	88441											
DARC	2532	broad.mit.edu	37	chr1	159175475	159175475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcactgtcctcttcatGcttttcagacctctcttccg	6	15	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159175475	T	T	159175475	3	4	85	1	0	0	0	0	1	0	0	0	4273	1319	46	3	279	3	DARC	1	159175475	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	524904	159175475	90075146	75	88442											
IGSF9	57549	broad.mit.edu	37	chr1	159897081	159897081	+	3'UTR	DEL	G	-	-													gaaactaggtctgtctggttGggggcctcctttgcaggtcc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159897081	-	-	159897081	6	5	85	0	1	1	0	1	0	0	0	0	7675	1363	47	0		0	IGSF9	1	159897081	3'UTR	DEL	G	TCGA-17-Z056-01A-01W-0747-08	721606	159897081	89353540	76	88443											
IGSF9	57549	broad.mit.edu	37	chr1	159897367	159897367	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccctgaggttcactgagtGaagagctcagatgtgaagct	13	8	2	6			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159897367	A	A	159897367	1	1	85	0	1	0	0	0	0	0	0	0	7675	1305	45	4		4	IGSF9	1	159897367	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	286	159897367	89353254	77	88444											
IGSF9	57549	broad.mit.edu	37	chr1	159897802	159897802	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttcccctgaaaaatccctgGacctcagcaaaagcttctaa	5	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159897802	C	C	159897802	1	2	85	0	1	0	0	0	0	0	0	0	7675	1189	41	4		4	IGSF9	1	159897802	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	435	159897802	89352819	78	88445											
IGSF9	57549	broad.mit.edu	37	chr1	159904086	159904086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcatgcctatgggcaggGgtgtctcaggaggcatagct	16	10	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159904086	A	A	159904086	3	1	85	1	0	0	0	0	1	0	0	0	7675	1232	43	4	2593	4	IGSF9	1	159904086	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	6284	159904086	89346535	79	88446											
CD244	51744	broad.mit.edu	37	chr1	160806015	160806015	+	Frame_Shift_Del	DEL	C	-	-													atcatagagtagatggtgctCccccctccaggaaaagtctg							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160806015	-	-	160806015	7	5	85	1	0	1	0	1	0	0	0	0	3017	842	30	0	249	0	CD244	1	160806015	Frame_Shift_Del	DEL	C	TCGA-17-Z056-01A-01W-0747-08	901929	160806015	88444606	80	88447											
CD244	51744	broad.mit.edu	37	chr1	160808161	160808161	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcgttcagtcctttttgtCcctctgctctgaataaccat	6	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160808161	T	T	160808161	1	4	85	0	1	0	0	0	0	0	0	0	3017	870	30	4		4	CD244	1	160808161	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2146	160808161	88442460	81	88448											
NIT1	4817	broad.mit.edu	37	chr1	161089615	161089615	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttactgtaggggcagTagtggccacttacaggaaga	12	8	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161089615	A	A	161089615	3	1	85	1	0	0	0	0	1	0	0	0	10528	1638	57	5	539	5	NIT1	1	161089615	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	281454	161089615	88161006	82	88449											
FCGR2B	2213	broad.mit.edu	37	chr1	161641444	161641444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgactgtgctttctggtcaGtggaggaaggccccagggtg	16	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161641444	T	T	161641444	1	4	85	0	1	0	0	0	0	0	0	0	5839	1044	36	3		3	FCGR2B	1	161641444	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	551829	161641444	87609177	83	88450											
PBX1	5087	broad.mit.edu	37	chr1	164776737	164776737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccattttatatttatttGgtgtgagcctttttgttatt	6	6	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164776737	T	T	164776737	1	4	85	0	1	0	0	0	0	0	0	0	11586	1363	47	2		2	PBX1	1	164776737	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3135293	164776737	84473884	84	88451											
LMX1A	4009	broad.mit.edu	37	chr1	165218684	165218684	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcaccaggctgagcagctCccgctccttctcatagtccc	8	18	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165218684	A	A	165218684	4	1	85	1	0	0	0	0	0	1	0	0	8935	864	30	3	715	3	LMX1A	1	165218684	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	441947	165218684	84031937	85	88452											
POU2F1	5451	broad.mit.edu	37	chr1	167384785	167384785	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatcacttgatgcaactgGgaacctggtatttgccaatg	9	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167384785	A	A	167384785	3	1	85	1	0	0	0	0	1	0	0	0	12367	1232	43	4	2028	4	POU2F1	1	167384785	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2166101	167384785	81865836	86	88453											
XCL2	6846	broad.mit.edu	37	chr1	168510326	168510326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgtggcttgtggatcaGcacagacttttaggccacgt	11	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168510326	T	T	168510326	3	4	85	1	0	0	0	0	1	0	0	0	17551	971	34	3	139	3	XCL2	1	168510326	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1125541	168510326	80740295	87	88454											
DPT	1805	broad.mit.edu	37	chr1	168670056	168670056	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaccaggtaggaaactaaGataagtaaaacctcaggtca	9	7	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168670056	A	A	168670056	1	1	85	0	1	0	0	0	0	0	0	0	4779	957	33	4		4	DPT	1	168670056	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	159730	168670056	80580565	88	88455											
C1orf112	55732	broad.mit.edu	37	chr1	169801565	169801565	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtctttttccagataaagtCatgccctggagaatgttatc	8	8	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169801565	T	T	169801565	3	4	85	1	0	0	0	0	1	0	0	0	2005	838	29	4	1511	4	C1orf112	1	169801565	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1131509	169801565	79449056	89	88456											
MYOC	4653	broad.mit.edu	37	chr1	171605559	171605559	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatcttatgacagttctggActcagcgccctggaaataga	9	9	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171605559	G	G	171605559	3	3	85	1	0	0	0	0	1	0	0	0	10180	275	10	5	497	5	MYOC	1	171605559	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1803994	171605559	77645062	90	88457											
GPR52	9293	broad.mit.edu	37	chr1	174417609	174417609	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccaggtttttggatatatCatctcagttctaaaaagtgt	8	6	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174417609	T	T	174417609	2	4	85	1	0	0	0	0	0	0	0	1	6763	816	29	4		4	GPR52	1	174417609	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2812050	174417609	74833012	91	88458											
TNN	63923	broad.mit.edu	37	chr1	175092570	175092570	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacctagtgactgactgGgtgacggagaatatggccac	12	8	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175092570	A	A	175092570	4	1	85	1	0	0	0	0	0	1	0	0	16446	1241	43	4	2727	4	TNN	1	175092570	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	674961	175092570	74158051	92	88459											
RASAL2	9462	broad.mit.edu	37	chr1	178421598	178421598	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttgcatcatggaagcagcAgtgcctgaaccgtggcaagc	13	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178421598	T	T	178421598	3	4	85	1	0	0	0	0	1	0	0	0	13172	188	7	5	1879	5	RASAL2	1	178421598	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	3329028	178421598	70829023	93	88460											
RALGPS2	55103	broad.mit.edu	37	chr1	178716032	178716032	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcttcttctagacctattCtgttcctattgtatttttca	3	9	5	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178716032	T	T	178716032	1	4	85	0	1	0	0	0	0	0	0	0	13126	928	32	4		4	RALGPS2	1	178716032	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	294434	178716032	70534589	94	88461											
SOAT1	6646	broad.mit.edu	37	chr1	179304777	179304777	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcttgaaggagagaaaaAcaaccatagagcgaagtaag	11	5	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179304777	G	G	179304777	3	3	85	1	0	0	0	0	1	0	0	0	15024	43	2	5	324	5	SOAT1	1	179304777	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	588745	179304777	69945844	95	88462											
CACNA1E	777	broad.mit.edu	37	chr1	181707490	181707490	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtcatttccttccaccatAtgtgtctttcaggtcctgag	8	11	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181707490	T	T	181707490	1	4	85	0	1	0	0	0	0	0	0	0	2568	464	16	5		5	CACNA1E	1	181707490	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	2402713	181707490	67543131	96	88463											
CACNA1E	777	broad.mit.edu	37	chr1	181727300	181727300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcgatggttccctccCagggcaagtgggaagacacc	12	15	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181727300	A	A	181727300	1	1	85	0	1	0	0	0	0	0	0	0	2568	609	21	2		2	CACNA1E	1	181727300	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	19810	181727300	67523321	97	88464											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185276813	185276813	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accttggaaaagaaatatatGagtgccaacacttacatatc	6	8	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185276813	A	A	185276813	1	1	85	0	1	0	0	0	0	0	0	0	8000	1305	45	4		4	IVNS1ABP	1	185276813	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3549513	185276813	63973808	98	88465											
FAM5C	339479	broad.mit.edu	37	chr1	190195428	190195428	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaacgttcctgaagatagtCtgggagaagtacttgaagcc	11	7	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190195428	T	T	190195428	3	4	85	1	0	0	0	0	1	0	0	0	5645	913	32	4	1567	4	FAM5C	1	190195428	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4918615	190195428	59055193	99	88466											
RGS21	431704	broad.mit.edu	37	chr1	192316479	192316479	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaccaactgcggaaacaatGacatggtctgaaaatatgga	9	8	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192316479	T	T	192316479	3	4	85	1	0	0	0	0	1	0	0	0	13413	1290	45	3	54	3	RGS21	1	192316479	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2121051	192316479	56934142	100	88467											
RGS1	5996	broad.mit.edu	37	chr1	192548398	192548398	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttatcccaggttcctcaaAtcagatatttacttaaatct	3	10	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192548398	G	G	192548398	2	3	85	1	0	0	0	0	0	0	0	1	13401	98	4	5		5	RGS1	1	192548398	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	231919	192548398	56702223	101	88468											
CFH	3075	broad.mit.edu	37	chr1	196695668	196695668	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaggaaaaaacgaaagaaGaatatggacacagtgaagtg	11	3	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196695668	C	C	196695668	3	2	85	1	0	0	0	0	1	0	0	0	3313	943	33	4	2010	4	CFH	1	196695668	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4147270	196695668	52554953	102	88469											
CRB1	23418	broad.mit.edu	37	chr1	197390148	197390148	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaatccactgcgaagaagAcgtcaatgaatgttcttcaa	9	8	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197390148	T	T	197390148	3	4	85	1	0	0	0	0	1	0	0	0	3880	275	10	5	1212	5	CRB1	1	197390148	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	694480	197390148	51860473	103	88470											
PTPRC	5788	broad.mit.edu	37	chr1	198703582	198703582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaagattcatagtgtgGgtcttggggttaggaaaaca	13	5	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198703582	A	A	198703582	1	1	85	0	1	0	0	0	0	0	0	0	12905	1247	43	4		4	PTPRC	1	198703582	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1313434	198703582	50547039	104	88471											
PTPRC	5788	broad.mit.edu	37	chr1	198721324	198721324	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagaaagagggagactgatCctttgcatatttcaaatagg	12	5	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198721324	A	A	198721324	1	1	85	0	1	0	0	0	0	0	0	0	12905	870	30	3		3	PTPRC	1	198721324	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	17742	198721324	50529297	105	88472											
CHI3L1	1116	broad.mit.edu	37	chr1	203149569	203149569	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggctgctggtggtgtggggGaatcctaccttctccccaac	14	12	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203149569	A	A	203149569	1	1	85	0	1	0	0	0	0	0	0	0	3371	1189	41	4		4	CHI3L1	1	203149569	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4428245	203149569	46101052	106	88473											
CHI3L1	1116	broad.mit.edu	37	chr1	203149613	203149613	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attacctcatagtaggcaagGgtccctgcctccttggtgaa	10	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203149613	C	C	203149613	2	2	85	1	0	0	0	0	0	0	0	1	3371	1219	43	4		4	CHI3L1	1	203149613	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	44	203149613	46101008	107	88474											
PLEKHA6	22874	broad.mit.edu	37	chr1	204236726	204236726	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgcaagctggacgtggacGaggagatgggatgcagggaa	19	6	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204236726	A	A	204236726	1	1	85	0	1	0	0	0	0	0	0	0	12155	1073	37	4		4	PLEKHA6	1	204236726	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1087113	204236726	45013895	108	88475											
PIK3C2B	5287	broad.mit.edu	37	chr1	204412608	204412608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggccagggcattgacaagCcagcactggcggttaaactc	12	11	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204412608	A	A	204412608	3	1	85	1	0	0	0	0	1	0	0	0	12005	740	26	3	1979	3	PIK3C2B	1	204412608	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	175882	204412608	44838013	109	88476											
CDK18	5129	broad.mit.edu	37	chr1	205498165	205498165	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacgagatggccacagggaGgcccctcttcccgggctcca	12	16	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205498165	A	A	205498165	3	1	85	1	0	0	0	0	1	0	0	0	3164	1000	35	4	1141	4	CDK18	1	205498165	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1085557	205498165	43752456	110	88477											
KCNH1	3756	broad.mit.edu	37	chr1	211032562	211032562	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaattgaaagaacttggcAcaactggagcactgaatttg	9	7	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211032562	T	T	211032562	1	4	85	0	1	0	0	0	0	0	0	0	8101	174	6	5		5	KCNH1	1	211032562	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	5534397	211032562	38218059	111	88478											
KCNH1	3756	broad.mit.edu	37	chr1	211192455	211192455	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggagacattataagggacCaagatggctgtatagaaggt	13	4	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211192455	T	T	211192455	2	4	85	1	0	0	0	0	0	0	0	1	8101	593	21	4		4	KCNH1	1	211192455	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	159893	211192455	38058166	112	88479											
CENPF	1063	broad.mit.edu	37	chr1	214803903	214803903	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcccgtcaacagcgttctttCcaaacactggaccaggagtg	9	13	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214803903	G	G	214803903	3	3	85	1	0	0	0	0	1	0	0	0	3261	854	30	4	1251	4	CENPF	1	214803903	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3611448	214803903	34446718	113	88480											
CDC42BPA	8476	broad.mit.edu	37	chr1	227348195	227348195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatatatcagacaaatagCaagggaaatgtctgtgaaca	9	6	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227348195	A	A	227348195	1	1	85	0	1	0	0	0	0	0	0	0	3102	725	25	3		3	CDC42BPA	1	227348195	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	12544292	227348195	21902426	114	88481											
OBSCN	84033	broad.mit.edu	37	chr1	228437916	228437916	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaggccgggggccagcgGctctccttcagcctggacgt	16	14	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228437916	C	C	228437916	2	2	85	1	0	0	0	0	0	0	0	1	10907	1190	42	4		4	OBSCN	1	228437916	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1089721	228437916	20812705	115	88482											
OBSCN	84033	broad.mit.edu	37	chr1	228476641	228476641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctatgtctgagcgggtgtGcacattcctgctttgtgctc	13	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228476641	T	T	228476641	1	4	85	0	1	0	0	0	0	0	0	0	10907	1334	46	3		3	OBSCN	1	228476641	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	38725	228476641	20773980	116	88483											
DISC1	27185	broad.mit.edu	37	chr1	231829654	231829654	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctacatgagaagctcgacAgggcctgggatcgggttcct	15	10	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231829654	G	G	231829654	2	3	85	1	0	0	0	0	0	0	0	1	4578	175	7	5		5	DISC1	1	231829654	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	3353013	231829654	17420967	117	88484											
RYR2	6262	broad.mit.edu	37	chr1	237886547	237886547	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggatatagcaaatgtgctTtttcatcttgaacaggtcag	9	6	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237886547	C	C	237886547	2	2	85	1	0	0	0	0	0	0	0	1	13880	1828	64	5		5	RYR2	1	237886547	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	6056893	237886547	11364074	118	88485											
RYR2	6262	broad.mit.edu	37	chr1	237893668	237893668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttagcagtatgtttttaGtggggctctaagatgaaaga	12	3	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237893668	T	T	237893668	1	4	85	0	1	0	0	0	0	0	0	0	13880	1044	36	3		3	RYR2	1	237893668	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7121	237893668	11356953	119	88486											
RYR2	6262	broad.mit.edu	37	chr1	237947973	237947973	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggaagcctcgtcgaaGgtgctaaaaagatcaaagtt	13	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237947973	A	A	237947973	3	1	85	1	0	0	0	0	1	0	0	0	13880	1000	35	4	13319	4	RYR2	1	237947973	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	54305	237947973	11302648	120	88487											
ZP4	57829	broad.mit.edu	37	chr1	238048010	238048010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggccagagactaggaaaGgttagacatgggactcaaga	13	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048010	T	T	238048010	1	4	85	0	1	0	0	0	0	0	0	0	18347	1015	35	2		2	ZP4	1	238048010	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	100037	238048010	11202611	121	88488											
FH	2271	broad.mit.edu	37	chr1	241663856	241663856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaggaaactgaagcatccCccagcagcctggctgagtgt	11	11	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241663856	A	A	241663856	3	1	85	1	0	0	0	0	1	0	0	0	5932	623	22	2	269	2	FH	1	241663856	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3615846	241663856	7586765	122	88489											
C1orf100	200159	broad.mit.edu	37	chr1	244528036	244528036	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactacgagaatttattgagCgtcgcccagtgatcccgcca	10	12	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244528036	T	T	244528036	3	4	85	1	0	0	0	0	1	0	0	0	1995	768	27	4	36	4	C1orf100	1	244528036	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2864180	244528036	4722585	123	88490											
OR2T8	343172	broad.mit.edu	37	chr1	248084403	248084403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaagtcctcttcatgatGgttctgagtatcgttttgac	8	10	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248084403	T	T	248084403	3	4	85	1	0	0	0	0	1	0	0	0	11124	1348	47	2	86	2	OR2T8	1	248084403	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3556367	248084403	1166218	124	88491											
OR2L13	284521	broad.mit.edu	37	chr1	248185156	248185156	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaatttcaggcattcactgGaggccttggaatgcaacccc	10	12	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248185156	C	C	248185156	1	2	85	0	1	0	0	0	0	0	0	0	11100	1189	41	4		4	OR2L13	1	248185156	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	100753	248185156	1065465	125	88492											
OR2M3	127062	broad.mit.edu	37	chr1	248367035	248367035	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcttcctatgctcgagttatCctggctgtcattcacatggg	10	11	2	0	rs143391143	byFrequency;by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248367035	G	G	248367035	3	3	85	1	0	0	0	0	1	0	0	0	11105	845	30	4	668	4	OR2M3	1	248367035	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	181879	248367035	883586	126	88493											
OR2T1	26696	broad.mit.edu	37	chr1	248569766	248569766	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttcctctaccttaccctTgtgggagctgaattcttcct	6	14	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248569766	A	A	248569766	2	1	85	1	0	0	0	0	0	0	0	1	11110	1799	63	5		5	OR2T1	1	248569766	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	202731	248569766	680855	127	88494											
RSAD2	91543	broad.mit.edu	37	chr2	7018038	7018038	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgctgttctgctggctgaGggcaaccttctggctgctag	13	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7018038	A	A	7018038	3	1	85	1	0	0	0	0	1	0	0	0	13806	1000	35	4	109	4	RSAD2	2	7018038	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08		7018038	236181335	128	88495											
CPSF3	51692	broad.mit.edu	37	chr2	9574073	9574073	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaattcctaatattaagcCtgatattcttatcattgtaa	4	6	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9574073	G	G	9574073	3	3	85	1	0	0	0	0	1	0	0	0	3858	681	24	4	615	4	CPSF3	2	9574073	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2556035	9574073	233625300	129	88496											
APOB	338	broad.mit.edu	37	chr2	21229477	21229477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgccactgacacttcCatatttttcgtggttaagct	8	9	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21229477	A	A	21229477	3	1	85	1	0	0	0	0	1	0	0	0	787	594	21	2	3444	2	APOB	2	21229477	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	11655404	21229477	221969896	130	88497											
OTOF	9381	broad.mit.edu	37	chr2	26684976	26684976	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgaagatgtcactggactTctcccctgtgaagaagtcgt	10	11	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26684976	G	G	26684976	3	3	85	1	0	0	0	0	1	0	0	0	11397	1792	62	5	932	5	OTOF	2	26684976	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	5455499	26684976	216514397	131	88498											
DPYSL5	56896	broad.mit.edu	37	chr2	27167549	27167549	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggttagaggagtggaccGcactccctacctgggggatg	15	9	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27167549	C	C	27167549	3	2	85	1	0	0	0	0	1	0	0	0	4790	1087	38	4	1508	4	DPYSL5	2	27167549	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	482573	27167549	216031824	132	88499											
SLC5A6	8884	broad.mit.edu	37	chr2	27425643	27425643	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtttcaatcaattccttctCtcccttaaaattgcttccta	2	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27425643	G	G	27425643	1	3	85	0	1	0	0	0	0	0	0	0	14783	928	32	4		4	SLC5A6	2	27425643	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	258094	27425643	215773730	133	88500											
SLC5A6	8884	broad.mit.edu	37	chr2	27426162	27426162	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagggaaccaaggtcgaatCaggtcttccatcgtaacagt	10	10	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27426162	T	T	27426162	2	4	85	1	0	0	0	0	0	0	0	1	14783	813	29	4		4	SLC5A6	2	27426162	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	519	27426162	215773211	134	88501											
SLC5A6	8884	broad.mit.edu	37	chr2	27427302	27427302	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtggggccaggcctgccctCatgggaacagaacagcgcct	14	13	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27427302	G	G	27427302	1	3	85	0	1	0	0	0	0	0	0	0	14783	841	29	4		4	SLC5A6	2	27427302	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1140	27427302	215772071	135	88502											
CAD	790	broad.mit.edu	37	chr2	27449565	27449565	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggaagtgggtcgggggctGaggaaaatattgatgggaca	20	3	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27449565	A	A	27449565	1	1	85	0	1	0	0	0	0	0	0	0	2591	1305	45	4		4	CAD	2	27449565	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	22263	27449565	215749808	136	88503											
ZNF513	130557	broad.mit.edu	37	chr2	27601505	27601505	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaggcaaaggggcagtGgggacagcggtagggcttct	19	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27601505	A	A	27601505	3	1	85	1	0	0	0	0	1	0	0	0	18085	1348	47	4	1005	4	ZNF513	2	27601505	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	151940	27601505	215597868	137	88504											
FAM179A	165186	broad.mit.edu	37	chr2	29222012	29222012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgccaccctgggtactGcgtgccaagccattcacacc	10	16	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29222012	T	T	29222012	1	4	85	0	1	0	0	0	0	0	0	0	5550	1334	46	3		3	FAM179A	2	29222012	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1620507	29222012	213977361	138	88505											
C2orf71	388939	broad.mit.edu	37	chr2	29295044	29295044	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttcccagctttgccttgtTcgtcctcaggatggggattg	12	11	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29295044	A	A	29295044	3	1	85	1	0	0	0	0	1	0	0	0	2213	1783	62	5	1790	5	C2orf71	2	29295044	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	73032	29295044	213904329	139	88506											
ALK	238	broad.mit.edu	37	chr2	29451871	29451871	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtcctccggtggcaccCtcctgcaaagattttccggc	10	14	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29451871	T	T	29451871	2	4	85	1	0	0	0	0	0	0	0	1	525	680	24	4		4	ALK	2	29451871	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	156827	29451871	213747502	140	88507											
LCLAT1	253558	broad.mit.edu	37	chr2	30791025	30791025	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaggctttacttttgtggTagaccgtctaagagaaggta	11	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30791025	C	C	30791025	3	2	85	1	0	0	0	0	1	0	0	0	8749	1638	57	5	743	5	LCLAT1	2	30791025	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1339154	30791025	212408348	141	88508											
XDH	7498	broad.mit.edu	37	chr2	31570420	31570420	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccattgaggtcagcgctgaCagaggcagccgtgggagagg	17	9	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31570420	T	T	31570420	3	4	85	1	0	0	0	0	1	0	0	0	17553	478	17	4	789	4	XDH	2	31570420	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	779395	31570420	211628953	142	88509											
XDH	7498	broad.mit.edu	37	chr2	31589625	31589625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactatgacactcgagtaccCtctggaccagcccacatctc	7	16	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31589625	A	A	31589625	1	1	85	0	1	0	0	0	0	0	0	0	17553	696	24	2		2	XDH	2	31589625	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	19205	31589625	211609748	143	88510											
C2orf56	55471	broad.mit.edu	37	chr2	37464964	37464964	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcacagctttccagctggTggaactgggcccaggtaggg	15	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37464964	A	A	37464964	3	1	85	1	0	0	0	0	1	0	0	0	2199	1696	59	5	376	5	C2orf56	2	37464964	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	5875339	37464964	205734409	144	88511											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44032291	44032291	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttgagatttgtaatttcAgagtattaacacgctgaaag	8	4	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44032291	T	T	44032291	5	4	85	1	0	0	0	0	0	0	1	0	4887	202	7	5	1044	5	DYNC2LI1	2	44032291	Splice_Site	SNP	A	TCGA-17-Z056-01A-01W-0747-08	6567327	44032291	199167082	145	88512											
LRPPRC	10128	broad.mit.edu	37	chr2	44187655	44187655	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaataaacatctatcaagTttaccgctaatgttgtatac	5	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44187655	A	A	44187655	1	1	85	0	1	0	0	0	0	0	0	0	9052	1740	60	5		5	LRPPRC	2	44187655	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	155364	44187655	199011718	146	88513											
SRBD1	55133	broad.mit.edu	37	chr2	45715491	45715491	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgagaagacagaaaaagggGaatatcactttcctaacttc	8	8	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45715491	A	A	45715491	1	1	85	0	1	0	0	0	0	0	0	0	15251	1189	41	4		4	SRBD1	2	45715491	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1527836	45715491	197483882	147	88514											
FOXN2	3344	broad.mit.edu	37	chr2	48573489	48573489	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgccaggccgaaggccactCtagtggacagtgagtcagca	13	12	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48573489	G	G	48573489	3	3	85	1	0	0	0	0	1	0	0	0	6080	912	32	4	138	4	FOXN2	2	48573489	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2857998	48573489	194625884	148	88515											
NRXN1	9378	broad.mit.edu	37	chr2	50765550	50765550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccagcagtactttgaaCttcagccatttgccggatat	7	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50765550	A	A	50765550	3	1	85	1	0	0	0	0	1	0	0	0	10760	565	20	3	2858	3	NRXN1	2	50765550	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2192061	50765550	192433823	149	88516											
CCT4	10575	broad.mit.edu	37	chr2	62107456	62107456	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggtacaagaatctaagaggGagccagcaatgatgactact	11	7	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62107456	C	C	62107456	3	2	85	1	0	0	0	0	1	0	0	0	2985	1174	41	4	1319	4	CCT4	2	62107456	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	11341906	62107456	181091917	150	88517											
PROKR1	10887	broad.mit.edu	37	chr2	68882357	68882357	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatccgcaagaggctgcgCtgccgcaggaagacggtcct	14	13	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68882357	G	G	68882357	2	3	85	1	0	0	0	0	0	0	0	1	12658	784	28	4		4	PROKR1	2	68882357	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6774901	68882357	174317016	151	88518											
ALMS1	7840	broad.mit.edu	37	chr2	73682530	73682530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgataatatttggctaaaGccttttttggttttgttttt	8	4	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73682530	T	T	73682530	1	4	85	0	1	0	0	0	0	0	0	0	535	986	34	3		3	ALMS1	2	73682530	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4800173	73682530	169516843	152	88519											
REG1B	5968	broad.mit.edu	37	chr2	79312758	79312758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagggccagaacaggggcCatggtcactcaaaaatcaat	11	9	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79312758	A	A	79312758	1	1	85	0	1	0	0	0	0	0	0	0	13319	609	21	2		2	REG1B	2	79312758	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5630228	79312758	163886615	153	88520											
CTNNA2	1496	broad.mit.edu	37	chr2	79806305	79806305	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctttttcttaatttccttCcttccttcctttcttccttc	0	14	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79806305	T	T	79806305	1	4	85	0	1	0	0	0	0	0	0	0	4047	870	30	4		4	CTNNA2	2	79806305	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	493547	79806305	163393068	154	88521											
POLR1A	25885	broad.mit.edu	37	chr2	86258661	86258661	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catcttgctcttgggtctttCgagcaccttccctgtgggga	11	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86258661	T	T	86258661	3	4	85	1	0	0	0	0	1	0	0	0	12304	884	31	4	812	4	POLR1A	2	86258661	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6452356	86258661	156940712	155	88522											
PTCD3	55037	broad.mit.edu	37	chr2	86333333	86333333	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccttcctgaaggtcgaGgcacgctttcccaacatgct	8	16	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86333333	A	A	86333333	1	1	85	0	1	0	0	0	0	0	0	0	12835	1015	35	4		4	PTCD3	2	86333333	5'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	74672	86333333	156866040	156	88523											
POLR1B	84172	broad.mit.edu	37	chr2	113308449	113308449	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttggttcaataggagtttCaatgcactgtgtgagggaag	14	4	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113308449	T	T	113308449	3	4	85	1	0	0	0	0	1	0	0	0	12305	838	29	4	650	4	POLR1B	2	113308449	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	26975116	113308449	129890924	157	88524											
DDX18	8886	broad.mit.edu	37	chr2	118579437	118579437	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaccatatatcatttttaGgaacaggagtccttattctc	5	9	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118579437	C	C	118579437	5	2	85	1	0	0	0	0	0	0	1	0	4378	1014	35	4	773	4	DDX18	2	118579437	Splice_Site	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5270988	118579437	124619936	158	88525											
STEAP3	55240	broad.mit.edu	37	chr2	120020487	120020487	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcataagatcacactaagagAgtgacaggactggggttcca	11	8	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120020487	G	G	120020487	1	3	85	0	1	0	0	0	0	0	0	0	15397	319	11	5		5	STEAP3	2	120020487	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1441050	120020487	123178886	159	88526											
CNTNAP5	129684	broad.mit.edu	37	chr2	125262125	125262125	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagaacgcgtagctgaaaTcctcacaggtactgtctgct	10	11	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125262125	C	C	125262125	3	2	85	1	0	0	0	0	1	0	0	0	3682	1435	50	5	1346	5	CNTNAP5	2	125262125	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	5241638	125262125	117937248	160	88527											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521219	125521219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagattatccacattttgtcCtctttttttcttaaatttat	2	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521219	A	A	125521219	1	1	85	0	1	0	0	0	0	0	0	0	3682	696	24	2		2	CNTNAP5	2	125521219	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	259094	125521219	117678154	161	88528											
MYO7B	4648	broad.mit.edu	37	chr2	128377908	128377908	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actctcctaatggtctgtgtCtttcagggatgagatttact	9	8	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128377908	G	G	128377908	1	3	85	0	1	0	0	0	0	0	0	0	10177	928	32	4		4	MYO7B	2	128377908	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2856689	128377908	114821465	162	88529											
POTEE	445582	broad.mit.edu	37	chr2	131976449	131976449	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccccagaaaggatctcatCgtcatgctcagggacactga	10	12	3	2	rs142484775		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131976449	A	A	131976449	2	1	85	1	0	0	0	0	0	0	0	1	12360	874	31	3		3	POTEE	2	131976449	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3598541	131976449	111222924	163	88530											
NCKAP5	344148	broad.mit.edu	37	chr2	133539801	133539801	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttttctactttggttttgGagatgtccattttcctgcta	7	8	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133539801	C	C	133539801	3	2	85	1	0	0	0	0	1	0	0	0	10318	1174	41	4	1174	4	NCKAP5	2	133539801	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1563352	133539801	109659572	164	88531											
LCT	3938	broad.mit.edu	37	chr2	136575116	136575116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgatcctgcagggcctgaGgcaggtcccagtggaacagc	14	12	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136575116	T	T	136575116	3	4	85	1	0	0	0	0	1	0	0	0	8765	1000	35	2	4329	2	LCT	2	136575116	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3035315	136575116	106624257	165	88532											
THSD7B	80731	broad.mit.edu	37	chr2	138208560	138208560	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaccttacaatggaggAcgaccatgtcccaaactgga	9	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138208560	C	C	138208560	2	2	85	1	0	0	0	0	0	0	0	1	16003	262	10	5		5	THSD7B	2	138208560	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1633444	138208560	104990813	166	88533											
LRP1B	53353	broad.mit.edu	37	chr2	140997090	140997090	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggacgagaggcacaatgaTggcaatgcttcctggaaaat	13	7	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140997090	C	C	140997090	3	2	85	1	0	0	0	0	1	0	0	0	9042	1464	51	5	479	5	LRP1B	2	140997090	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2788530	140997090	102202283	167	88534											
KIF5C	3800	broad.mit.edu	37	chr2	149840214	149840214	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagaaaagggcaactgagatCctgaatttgctgttgaaaga	11	5	0	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149840214	T	T	149840214	2	4	85	1	0	0	0	0	0	0	0	1	8377	845	30	4		4	KIF5C	2	149840214	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	8843124	149840214	93359159	168	88535			1	69		3	3	108	C		6.373224e-06
KIF5C	3800	broad.mit.edu	37	chr2	149840295	149840295	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaactgtaagccagcccttCttttatcctctctacctgct	4	14	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149840295	T	T	149840295	1	4	85	0	1	0	0	0	0	0	0	0	8377	928	32	4		4	KIF5C	2	149840295	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	81	149840295	93359078	169	88536			1	69		3	3	108	C		6.373224e-06
KIF5C	3800	broad.mit.edu	37	chr2	149840321	149840321	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctctctacctgctcctgtCaagttagtagggtctgtgct	9	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149840321	T	T	149840321	1	4	85	0	1	0	0	0	0	0	0	0	8377	841	29	4		4	KIF5C	2	149840321	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	26	149840321	93359052	170	88537			1	69		3	3	108	C		6.373224e-06
NEB	4703	broad.mit.edu	37	chr2	152553214	152553214	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagagtctgtaacttgggtGaattttgtcttatctggatg	13	4	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152553214	A	A	152553214	2	1	85	1	0	0	0	0	0	0	0	1	10397	1281	45	4		4	NEB	2	152553214	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2712893	152553214	90646159	171	88538											
KCNH7	90134	broad.mit.edu	37	chr2	163241380	163241380	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctgctttttttctcttcaAagtgtctcttggaactctga	6	9	5	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163241380	T	T	163241380	3	4	85	1	0	0	0	0	1	0	0	0	8107	14	1	5	826	5	KCNH7	2	163241380	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	10688166	163241380	79957993	172	88539											
KCNH7	90134	broad.mit.edu	37	chr2	163374376	163374376	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagctgggaacttgactgCagcatgtcagggtagagtcg	15	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163374376	A	A	163374376	2	1	85	1	0	0	0	0	0	0	0	1	8107	697	25	3		3	KCNH7	2	163374376	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	132996	163374376	79824997	173	88540											
KCNH7	90134	broad.mit.edu	37	chr2	163374397	163374397	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcatgtcagggtagagtcgGtcccattgccttttgggaga	14	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163374397	C	C	163374397	3	2	85	1	0	0	0	0	1	0	0	0	8107	1252	44	4	2973	4	KCNH7	2	163374397	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	21	163374397	79824976	174	88541											
SCN2A	6326	broad.mit.edu	37	chr2	166170198	166170198	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatggctacacgagctttgAcacctttagttgggcctttt	9	10	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166170198	T	T	166170198	3	4	85	1	0	0	0	0	1	0	0	0	14029	275	10	5	1229	5	SCN2A	2	166170198	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	2795801	166170198	77029175	175	88542											
SCN7A	6332	broad.mit.edu	37	chr2	167262131	167262131	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacttttccttagctttgtCaaaataggcaccttctttag	6	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167262131	G	G	167262131	3	3	85	1	0	0	0	0	1	0	0	0	14036	826	29	4	44	4	SCN7A	2	167262131	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1091933	167262131	75937242	176	88543											
XIRP2	129446	broad.mit.edu	37	chr2	168067256	168067256	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctttcagcgactgctggcCctaataagcctgagagtgga	12	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168067256	T	T	168067256	3	4	85	1	0	0	0	0	1	0	0	0	17557	623	22	4	584	4	XIRP2	2	168067256	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	805125	168067256	75132117	177	88544											
B3GALT1	8708	broad.mit.edu	37	chr2	168725727	168725727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaactcgacctatcaacCcacattcttttgaatttctt	3	11	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168725727	A	A	168725727	3	1	85	1	0	0	0	0	1	0	0	0	1252	623	22	2	180	2	B3GALT1	2	168725727	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	658471	168725727	74473646	178	88545											
STK39	27347	broad.mit.edu	37	chr2	169018201	169018201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcattctgaaaagagattaCatgcatttattcatttctca	4	7	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169018201	A	A	169018201	1	1	85	0	1	0	0	0	0	0	0	0	15423	493	17	3		3	STK39	2	169018201	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	292474	169018201	74181172	179	88546											
KBTBD10	10324	broad.mit.edu	37	chr2	170367347	170367347	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatatgtggtaggaggactAtatgtggatgaagaaaataa	12	1	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170367347	T	T	170367347	2	4	85	1	0	0	0	0	0	0	0	1	8060	436	16	5		5	KBTBD10	2	170367347	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1349146	170367347	72832026	180	88547											
MYO3B	140469	broad.mit.edu	37	chr2	171238469	171238469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagccatgcttgctgcccGctttctgctacattatttgc	8	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171238469	T	T	171238469	1	4	85	0	1	0	0	0	0	0	0	0	10171	1102	38	3		3	MYO3B	2	171238469	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	871122	171238469	71960904	181	88548											
RAPGEF4	11069	broad.mit.edu	37	chr2	173898551	173898551	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtttgattaagagccaatgGatatatatttcccctagaaa	7	6	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173898551	A	A	173898551	1	1	85	0	1	0	0	0	0	0	0	0	13154	1189	41	4		4	RAPGEF4	2	173898551	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2660082	173898551	69300822	182	88549											
SCRN3	79634	broad.mit.edu	37	chr2	175292571	175292571	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctttcctcagtgtacaaAagatgaaattcaaatttatc	4	8	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175292571	T	T	175292571	3	4	85	1	0	0	0	0	1	0	0	0	14053	14	1	5	1249	5	SCRN3	2	175292571	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1394020	175292571	67906802	183	88550											
CHN1	1123	broad.mit.edu	37	chr2	175677131	175677131	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggtcacagctgtacacCtttttgacatgcttcaagtc	8	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175677131	G	G	175677131	3	3	85	1	0	0	0	0	1	0	0	0	3393	680	24	4	607	4	CHN1	2	175677131	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	384560	175677131	67522242	184	88551											
TTN	7273	broad.mit.edu	37	chr2	179434379	179434379	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tataataggtccagggacgtCagcatgttctccaactccag	9	11	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179434379	A	A	179434379	3	1	85	1	0	0	0	0	1	0	0	0	16861	826	29	3	31647	3	TTN	2	179434379	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3757248	179434379	63764994	185	88552											
TTN	7273	broad.mit.edu	37	chr2	179610805	179610805	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatcagaaagacagacatttCgaattttaagagtgtgactt	8	5	1	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179610805	T	T	179610805	3	4	85	1	0	0	0	0	1	0	0	0	16861	884	31	4	93975	4	TTN	2	179610805	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	176426	179610805	63588568	186	88553											
TTN	7273	broad.mit.edu	37	chr2	179611114	179611114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcatacttttatggtcaGgagtaaattcgggaactgtc	9	7	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179611114	T	T	179611114	3	4	85	1	0	0	0	0	1	0	0	0	16861	1000	35	2	94284	2	TTN	2	179611114	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	309	179611114	63588259	187	88554											
TTN	7273	broad.mit.edu	37	chr2	179637970	179637970	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caattttatatttagaactgGgcttgatttccttgtcctta	6	7	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179637970	C	C	179637970	3	2	85	1	0	0	0	0	1	0	0	0	16861	1232	43	4	103587	4	TTN	2	179637970	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	26856	179637970	63561403	188	88555											
ITGA4	3676	broad.mit.edu	37	chr2	182390024	182390024	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgactgttcatgggtaagTagacataaaggcttcctttc	10	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182390024	C	C	182390024	1	2	85	0	1	0	0	0	0	0	0	0	7948	1653	57	5		5	ITGA4	2	182390024	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2752054	182390024	60809349	189	88556											
FRZB	2487	broad.mit.edu	37	chr2	183707282	183707282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagcgttctgaaaaacaCattttagttataagcacatt	5	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183707282	A	A	183707282	1	1	85	0	1	0	0	0	0	0	0	0	6125	493	17	3		3	FRZB	2	183707282	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1317258	183707282	59492091	190	88557											
ITGAV	3685	broad.mit.edu	37	chr2	187495635	187495635	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacatctaccttattgactAgactgtggttaaaaataaac	5	8	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187495635	G	G	187495635	1	3	85	0	1	0	0	0	0	0	0	0	7958	435	15	5		5	ITGAV	2	187495635	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	3788353	187495635	55703738	191	88558											
COL5A2	1290	broad.mit.edu	37	chr2	189903941	189903941	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatattttggaatgcagtTgagaataaacaatcagaaac	7	5	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189903941	G	G	189903941	1	3	85	0	1	0	0	0	0	0	0	0	3729	1827	63	5		5	COL5A2	2	189903941	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2408306	189903941	53295432	192	88559											
COL5A2	1290	broad.mit.edu	37	chr2	189922115	189922115	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccttgaagacctggtggGcctgtatctccaggggtccc	12	12	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189922115	T	T	189922115	2	4	85	1	0	0	0	0	0	0	0	1	3729	1190	42	3		3	COL5A2	2	189922115	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	18174	189922115	53277258	193	88560											
GLS	2744	broad.mit.edu	37	chr2	191786029	191786029	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgaatgatttctaaaTtacctgacagaaacacttaa	6	6	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191786029	C	C	191786029	1	2	85	0	1	0	0	0	0	0	0	0	6527	1508	52	5		5	GLS	2	191786029	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1863914	191786029	51413344	194	88561											
STAT4	6775	broad.mit.edu	37	chr2	191899317	191899317	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgaccatcactgtagctaGattggactgaaatgaaagaa	11	6	1	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191899317	A	A	191899317	3	1	85	1	0	0	0	0	1	0	0	0	15385	942	33	4	697	4	STAT4	2	191899317	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	113288	191899317	51300056	195	88562											
SLC39A10	57181	broad.mit.edu	37	chr2	196573497	196573497	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattgaaaggacttgttgctCtaggaggcatttacttgcta	10	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196573497	T	T	196573497	2	4	85	1	0	0	0	0	0	0	0	1	14727	912	32	4		4	SLC39A10	2	196573497	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4674180	196573497	46625876	196	88563											
DNAH7	56171	broad.mit.edu	37	chr2	196822080	196822080	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacataatgtctggagagcTgaaaatgggctccagataca	11	7	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196822080	A	A	196822080	3	1	85	1	0	0	0	0	1	0	0	0	4646	1580	55	5	9279	5	DNAH7	2	196822080	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	248583	196822080	46377293	197	88564											
NOP58	51602	broad.mit.edu	37	chr2	203155831	203155831	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtgattctccctcatcctCtgcaaacattccataggcga	7	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203155831	T	T	203155831	1	4	85	0	1	0	0	0	0	0	0	0	10635	928	32	4		4	NOP58	2	203155831	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6333751	203155831	40043542	198	88565											
FAM117B	150864	broad.mit.edu	37	chr2	203620382	203620382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataataattaaagagactgGggaaaaggaagagcaactta	10	3	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203620382	T	T	203620382	3	4	85	1	0	0	0	0	1	0	0	0	5456	1232	43	2	1100	2	FAM117B	2	203620382	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	464551	203620382	39578991	199	88566											
ICOS	29851	broad.mit.edu	37	chr2	204820546	204820546	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccattaagagtctgaaattCtgccattctcagttatccaa	5	10	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204820546	G	G	204820546	3	3	85	1	0	0	0	0	1	0	0	0	7556	912	32	4	252	4	ICOS	2	204820546	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1200164	204820546	38378827	200	88567											
PIKFYVE	200576	broad.mit.edu	37	chr2	209190983	209190983	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgatagccagagcttgggtAgaatgctggccgattatcga	14	8	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209190983	T	T	209190983	4	4	85	1	0	0	0	0	0	1	0	0	12019	412	15	5	3533	5	PIKFYVE	2	209190983	Nonsense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4370437	209190983	34008390	201	88568											
CPS1	1373	broad.mit.edu	37	chr2	211504768	211504768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgatggtgctaggctgtGgtccatatcacattggtaaa	12	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211504768	T	T	211504768	3	4	85	1	0	0	0	0	1	0	0	0	3855	1348	47	2	3060	2	CPS1	2	211504768	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2313785	211504768	31694605	202	88569											
ERBB4	2066	broad.mit.edu	37	chr2	212488780	212488780	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttccaccaactgcaaagcgGaaagaagaaggttatacttt	9	8	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212488780	A	A	212488780	1	1	85	0	1	0	0	0	0	0	0	0	5251	1189	41	4		4	ERBB4	2	212488780	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	984012	212488780	30710593	203	88570											
ERBB4	2066	broad.mit.edu	37	chr2	212576912	212576912	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcacaagctgtagaaacAagactcagagttaggggatt	10	8	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212576912	C	C	212576912	1	2	85	0	1	0	0	0	0	0	0	0	5251	145	5	5		5	ERBB4	2	212576912	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	88132	212576912	30622461	204	88571											
TMEM169	92691	broad.mit.edu	37	chr2	216960765	216960765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaggaaggctgtggctGctgccctggcgctggatggg	17	11	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216960765	T	T	216960765	3	4	85	1	0	0	0	0	1	0	0	0	16207	1319	46	3	81	3	TMEM169	2	216960765	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4383853	216960765	26238608	205	88572											
SLC4A3	6508	broad.mit.edu	37	chr2	220501621	220501621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccagcgaggtcttgggGgtggcagagatggaggtgga	21	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220501621	T	T	220501621	1	4	85	0	1	0	0	0	0	0	0	0	14769	1247	43	2		2	SLC4A3	2	220501621	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3540856	220501621	22697752	206	88573											
UGT1A7	54577	broad.mit.edu	37	chr2	234591160	234591160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttcctatgtccccagaCttctcttagggttctcagac	6	14	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234591160	A	A	234591160	3	1	85	1	0	0	0	0	1	0	0	0	17076	565	20	3	579	3	UGT1A7	2	234591160	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	14089539	234591160	8608213	207	88574											
TRPM8	79054	broad.mit.edu	37	chr2	234878259	234878259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttggggaaagtgtgggGcggggaagaaagtttgcatg	18	2	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234878259	T	T	234878259	1	4	85	0	1	0	0	0	0	0	0	0	16717	1218	42	3		3	TRPM8	2	234878259	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	287099	234878259	8321114	208	88575											
SH3BP4	23677	broad.mit.edu	37	chr2	235950275	235950275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggattttcgaactgcctggCtaaaccacaggaagctggcc	11	11	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235950275	A	A	235950275	3	1	85	1	0	0	0	0	1	0	0	0	14359	796	28	3	868	3	SH3BP4	2	235950275	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1072016	235950275	7249098	209	88576											
LRRFIP1	9208	broad.mit.edu	37	chr2	238671518	238671518	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctgaaaacacagtacagGttgagtcaaatgaggtcatg	10	8	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238671518	C	C	238671518	3	2	85	1	0	0	0	0	1	0	0	0	9114	1261	44	4	1880	4	LRRFIP1	2	238671518	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2721243	238671518	4527855	210	88577											
HDAC4	9759	broad.mit.edu	37	chr2	240037090	240037090	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagggatgctgcaaaccccAccctctggggcagacaatca	11	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240037090	C	C	240037090	1	2	85	0	1	0	0	0	0	0	0	0	7076	174	6	5		5	HDAC4	2	240037090	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1365572	240037090	3162283	211	88578											
CAPN10	11132	broad.mit.edu	37	chr2	241528608	241528608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagctgaaggacacccGctgcaggaaaccaccttcct	10	15	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241528608	T	T	241528608	1	4	85	0	1	0	0	0	0	0	0	0	2649	1102	38	3		3	CAPN10	2	241528608	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1491518	241528608	1670765	212	88579											
CNTN6	27255	broad.mit.edu	37	chr3	1443078	1443078	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatactttgaccatgagctAattaacattcatttggatct	5	8	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1443078	C	C	1443078	1	2	85	0	1	0	0	0	0	0	0	0	3677	377	13	5		5	CNTN6	3	1443078	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08		1443078	196579352	213	88580											
MTMR14	64419	broad.mit.edu	37	chr3	9743548	9743548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggctgcgtacagcagcaCagtggggcttcgggcagtag	16	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9743548	A	A	9743548	3	1	85	1	0	0	0	0	1	0	0	0	10036	478	17	3	1918	3	MTMR14	3	9743548	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	8300470	9743548	188278882	214	88581											
SLC6A11	6538	broad.mit.edu	37	chr3	10974789	10974789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggctgaccctgctctccCgtgtgtccgttcacctccca	9	17	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10974789	A	A	10974789	1	1	85	0	1	0	0	0	0	0	0	0	14788	667	23	1		1	SLC6A11	3	10974789	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1231241	10974789	187047641	215	88582											
C3orf31	132001	broad.mit.edu	37	chr3	11832011	11832011	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcagccaccctttccacaTtttgtgcagttttagtgaac	6	13	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11832011	C	C	11832011	3	2	85	1	0	0	0	0	1	0	0	0	2243	1493	52	5	35	5	C3orf31	3	11832011	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	857222	11832011	186190419	216	88583											
PLCL2	23228	broad.mit.edu	37	chr3	17052825	17052825	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acgccaatgaaaatccagggGactttgtaaattacaacaaa	7	8	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17052825	C	C	17052825	3	2	85	1	0	0	0	0	1	0	0	0	12135	1174	41	4	1987	4	PLCL2	3	17052825	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5220814	17052825	180969605	217	88584											
SGOL1	151648	broad.mit.edu	37	chr3	20216189	20216189	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcttacttttagtttgTtcagatttagattctaaaat	5	5	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20216189	C	C	20216189	2	2	85	1	0	0	0	0	0	0	0	1	14329	1722	60	5		5	SGOL1	3	20216189	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3163364	20216189	177806241	218	88585											
NGLY1	55768	broad.mit.edu	37	chr3	25760913	25760913	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacagactacttcagtaagtCcttgattattgccagctttt	6	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25760913	A	A	25760913	1	1	85	0	1	0	0	0	0	0	0	0	10493	870	30	3		3	NGLY1	3	25760913	3'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5544724	25760913	172261517	219	88586											
SCN5A	6331	broad.mit.edu	37	chr3	38622896	38622896	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcaggctcaccaaggcaCtgcaccatgccaagccatcc	10	16	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38622896	T	T	38622896	1	4	85	0	1	0	0	0	0	0	0	0	14035	580	20	4		4	SCN5A	3	38622896	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	12861983	38622896	159399534	220	88587											
SCN10A	6336	broad.mit.edu	37	chr3	38738896	38738899	+	Frame_Shift_Del	DEL	AGCT	-	-													ttcatcttcattttgtattgAgctagatgtcctcatgttga							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38738899	-	-	38738896	7	5	85	1	0	1	0	1	0	0	0	0	14025	304	11	0	59	0	SCN10A	3	38738896	Frame_Shift_Del	DEL	AGCT	TCGA-17-Z056-01A-01W-0747-08	116000	38738896	159283534	221	88588											
SLC25A38	54977	broad.mit.edu	37	chr3	39431872	39431872	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttatgaggaagtgatctAagtgattttttccttcctgt	9	5	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39431872	G	G	39431872	1	3	85	0	1	0	0	0	0	0	0	0	14616	377	13	5		5	SLC25A38	3	39431872	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	692976	39431872	158590558	222	88589											
ZNF660	285349	broad.mit.edu	37	chr3	44636579	44636579	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacttgagaacccacactaaGgagaaaccctataaatgtag	7	10	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44636579	C	C	44636579	3	2	85	1	0	0	0	0	1	0	0	0	18197	991	35	4	896	4	ZNF660	3	44636579	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5204707	44636579	153385851	223	88590											
ZNF197	10168	broad.mit.edu	37	chr3	44688007	44688007	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaaatacaggaggcagaGgaacaaataaaagacaccac	10	8	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44688007	A	A	44688007	3	1	85	1	0	0	0	0	1	0	0	0	17885	1000	35	4	3137	4	ZNF197	3	44688007	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	51428	44688007	153334423	224	88591											
VPRBP	9730	broad.mit.edu	37	chr3	51457358	51457358	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtgggcaggtggcaacTggattcttgcagcgagcatg	16	7	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51457358	C	C	51457358	2	2	85	1	0	0	0	0	0	0	0	1	17312	1567	55	5		5	VPRBP	3	51457358	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	6769351	51457358	146565072	225	88592											
ITIH1	3697	broad.mit.edu	37	chr3	52811656	52811656	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggtgccatggggcctcggGggctgctgttgtgcatgtac	17	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52811656	A	A	52811656	3	1	85	1	0	0	0	0	1	0	0	0	7973	1232	43	4	27	4	ITIH1	3	52811656	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1354298	52811656	145210774	226	88593											
LRTM1	57408	broad.mit.edu	37	chr3	54962005	54962005	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgtgcagagcaacacaCgaagggcatggcagactcag	12	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54962005	T	T	54962005	1	4	85	1	0	0	0	0	0	0	0	0	9131	551	19	4		4	LRTM1	3	54962005	Translation_Start_Site	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2150349	54962005	143060425	227	88594											
SLMAP	7871	broad.mit.edu	37	chr3	57908711	57908711	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagatgagctcaaacagtgTaaaaacaacctgaagctgct	8	9	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57908711	A	A	57908711	4	1	85	1	0	0	0	0	0	1	0	0	14863	1644	57	5	2382	5	SLMAP	3	57908711	Nonsense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2946706	57908711	140113719	228	88595											
FLNB	2317	broad.mit.edu	37	chr3	58109130	58109130	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccaggtctcgagcacgGgaaggtgggtgaagctggcc	20	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58109130	A	A	58109130	3	1	85	1	0	0	0	0	1	0	0	0	5992	1232	43	4	3519	4	FLNB	3	58109130	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	200419	58109130	139913300	229	88596											
FLNB	2317	broad.mit.edu	37	chr3	58109141	58109141	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgagcacgggaaggtgggtGaagctggcctccttagcgtc	16	10	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58109141	A	A	58109141	3	1	85	1	0	0	0	0	1	0	0	0	5992	1291	45	4	3530	4	FLNB	3	58109141	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	11	58109141	139913289	230	88597											
PXK	54899	broad.mit.edu	37	chr3	58389538	58389538	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctgctttcatcctagtctGagagtgcacgtggttcaaga	10	9	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58389538	A	A	58389538	1	1	85	0	1	0	0	0	0	0	0	0	12957	1305	45	4		4	PXK	3	58389538	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	280397	58389538	139632892	231	88598											
C3orf14	57415	broad.mit.edu	37	chr3	62318803	62318803	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggaaatgcattctacatAtatgtgtgtgtgtgtgtgtg	13	3	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62318803	G	G	62318803	1	3	85	0	1	0	0	0	0	0	0	0	2230	464	16	5		5	C3orf14	3	62318803	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	3929265	62318803	135703627	232	88599											
ROBO1	6091	broad.mit.edu	37	chr3	79174505	79174505	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaattgtggttgttagctgGaagcagggatgattcgatta	14	3	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79174505	A	A	79174505	1	1	85	0	1	0	0	0	0	0	0	0	13624	1189	41	4		4	ROBO1	3	79174505	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	16855702	79174505	118847925	233	88600											
CADM2	253559	broad.mit.edu	37	chr3	85985088	85985088	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcctttaactgtagaaatCcacagtttgtgtcttttctt	6	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85985088	A	A	85985088	1	1	85	0	1	0	0	0	0	0	0	0	2593	870	30	3		3	CADM2	3	85985088	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6810583	85985088	112037342	234	88601											
EPHA3	2042	broad.mit.edu	37	chr3	89259568	89259568	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaacaattctaaggaggaaGatcctccaaggatgtactgc	9	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89259568	T	T	89259568	3	4	85	1	0	0	0	0	1	0	0	0	5210	942	33	3	722	3	EPHA3	3	89259568	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3274480	89259568	108762862	235	88602											
EPHA3	2042	broad.mit.edu	37	chr3	89457155	89457155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgctttgcacattctgaGcataggtaactattttaaat	6	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89457155	T	T	89457155	1	4	85	0	1	0	0	0	0	0	0	0	5210	986	34	3		3	EPHA3	3	89457155	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	197587	89457155	108565275	236	88603											
EPHA6	285220	broad.mit.edu	37	chr3	97467522	97467522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttacacatgatgcacataCaggagaagggatttcatgta	10	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97467522	A	A	97467522	3	1	85	1	0	0	0	0	1	0	0	0	5213	479	17	3	3557	3	EPHA6	3	97467522	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	8010367	97467522	100554908	237	88604											
NIT2	56954	broad.mit.edu	37	chr3	100058772	100058772	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggaatgcagcatatatctCattggaggtaacttcctacc	8	9	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100058772	A	A	100058772	2	1	85	1	0	0	0	0	0	0	0	1	10529	813	29	3		3	NIT2	3	100058772	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2591250	100058772	97963658	238	88605											
TMEM45A	55076	broad.mit.edu	37	chr3	100287906	100287906	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaattcaaaagggtatttCattccttatcatcccataag	4	8	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100287906	T	T	100287906	1	4	85	0	1	0	0	0	0	0	0	0	16292	841	29	4		4	TMEM45A	3	100287906	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	229134	100287906	97734524	239	88606											
IMPG2	50939	broad.mit.edu	37	chr3	100992538	100992538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattctgcaatctgttcacCtgctggttttgtggcttctt	9	9	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100992538	A	A	100992538	3	1	85	1	0	0	0	0	1	0	0	0	7799	681	24	2	3062	2	IMPG2	3	100992538	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	704632	100992538	97029892	240	88607											
IMPG2	50939	broad.mit.edu	37	chr3	101038618	101038618	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgttgattcttcaggcagGagaaaagaaactgcactctt	9	8	4	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101038618	A	A	101038618	2	1	85	1	0	0	0	0	0	0	0	1	7799	1161	41	4		4	IMPG2	3	101038618	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	46080	101038618	96983812	241	88608											
KIAA1524	57650	broad.mit.edu	37	chr3	108278852	108278852	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccattatgtcagatattctCacatcacaaatctgatcctt	3	11	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108278852	A	A	108278852	2	1	85	1	0	0	0	0	0	0	0	1	8309	813	29	3		3	KIAA1524	3	108278852	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7240234	108278852	89743578	242	88609											
GRAMD1C	54762	broad.mit.edu	37	chr3	113627906	113627906	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgccatcaaagtcactggaCttgaataaaaatgaatatct	7	7	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113627906	G	G	113627906	3	3	85	1	0	0	0	0	1	0	0	0	6815	564	20	4	925	4	GRAMD1C	3	113627906	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5349054	113627906	84394524	243	88610											
LSAMP	4045	broad.mit.edu	37	chr3	116163796	116163796	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaatccacgctgcgaacaGgcagtcctgtgggaagaagg	13	9	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116163796	C	C	116163796	3	2	85	1	0	0	0	0	1	0	0	0	9135	1000	35	4	961	4	LSAMP	3	116163796	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2535890	116163796	81858634	244	88611											
IGSF11	152404	broad.mit.edu	37	chr3	118649140	118649140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctacagaagaaggaacaGggaggttatatgctcgccct	11	10	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118649140	T	T	118649140	1	4	85	0	1	0	0	0	0	0	0	0	7668	1015	35	2		2	IGSF11	3	118649140	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2485344	118649140	79373290	245	88612											
POPDC2	64091	broad.mit.edu	37	chr3	119373360	119373360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccctgttacctggaacaCcccctcctcagaaggctgta	8	16	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119373360	A	A	119373360	3	1	85	1	0	0	0	0	1	0	0	0	12350	507	18	3	514	3	POPDC2	3	119373360	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	724220	119373360	78649070	246	88613											
NR1I2	8856	broad.mit.edu	37	chr3	119531736	119531736	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatcttctccctgctgccCcacatggctgacatgtcaac	8	15	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119531736	T	T	119531736	2	4	85	1	0	0	0	0	0	0	0	1	10715	610	22	4		4	NR1I2	3	119531736	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	158376	119531736	78490694	247	88614											
STXBP5L	9515	broad.mit.edu	37	chr3	120976095	120976095	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttccagatctctcagccCagcttccttcttcaaggagt	7	14	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120976095	A	A	120976095	3	1	85	1	0	0	0	0	1	0	0	0	15475	595	21	2	1809	2	STXBP5L	3	120976095	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1444359	120976095	77046335	248	88615											
KPNA1	3836	broad.mit.edu	37	chr3	122155847	122155847	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgttgaccaggatagtcttGaactcctgaccgcaagtgat	10	9	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122155847	A	A	122155847	1	1	85	0	1	0	0	0	0	0	0	0	8500	1305	45	4		4	KPNA1	3	122155847	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1179752	122155847	75866583	249	88616											
KALRN	8997	broad.mit.edu	37	chr3	124211774	124211774	+	Intron	SNP	C	A	A													actgcctgcctcacaggcttCcgggtgcgggaatgggatga							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124211774	A	A	124211774	1	1	85	0	1	0	0	0	0	0	0	0	8045	870	30	3		3	KALRN	3	124211774	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2055927	124211774	73810656	250	88617	396	2									
KALRN	8997	broad.mit.edu	37	chr3	124211782	124211782	+	Intron	SNP	G	A	A													cctcacaggcttccgggtgcGggaatgggatgaatctttgc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124211782	A	A	124211782	1	1	85	0	1	0	0	0	0	0	0	0	8045	1131	39	4		4	KALRN	3	124211782	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8	124211782	73810648	251	88618	396	2									
COPG	22820	broad.mit.edu	37	chr3	128987441	128987441	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgcccctggccacggcGcccatggcagagcagagaac	13	15	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128987441	A	A	128987441	2	1	85	1	0	0	0	0	0	0	0	1	3763	1074	38	4		4	COPG	3	128987441	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4775659	128987441	69034989	252	88619											
COL6A6	131873	broad.mit.edu	37	chr3	130285829	130285829	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcagcactgaatttcacActgagtctgttgcaaaaagc	10	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130285829	C	C	130285829	2	2	85	1	0	0	0	0	0	0	0	1	3735	146	6	5		5	COL6A6	3	130285829	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1298388	130285829	67736601	253	88620											
DNAJC13	23317	broad.mit.edu	37	chr3	132182719	132182719	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtctagagaattgattcaGatgttacataaaactaaatg	7	5	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132182719	A	A	132182719	1	1	85	0	1	0	0	0	0	0	0	0	4672	957	33	4		4	DNAJC13	3	132182719	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1896890	132182719	65839711	254	88621											
TMEM22	80723	broad.mit.edu	37	chr3	136573446	136573446	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaaggctatggaaatttTatggaggaaaatccaaagaa	10	3	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136573446	C	C	136573446	2	2	85	1	0	0	0	0	0	0	0	1	16266	1751	61	5		5	TMEM22	3	136573446	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	4390727	136573446	61448984	255	88622											
MRPS22	56945	broad.mit.edu	37	chr3	139062765	139062765	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccggaagacttccggcCctttccgcctttaactagac	10	15	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139062765	A	A	139062765	1	1	85	0	1	0	0	0	0	0	0	0	9927	638	22	2		2	MRPS22	3	139062765	5'Flank	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2489319	139062765	58959665	256	88623											
NMNAT3	349565	broad.mit.edu	37	chr3	139292404	139292404	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacagaatccctgacaTctcattctcctacagacaag	4	14	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139292404	A	A	139292404	1	1	85	0	1	0	0	0	0	0	0	0	10595	1450	50	5		5	NMNAT3	3	139292404	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	229639	139292404	58730026	257	88624											
ZBTB38	253461	broad.mit.edu	37	chr3	141162101	141162101	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccctccagtatccaacttaGaggttaatcaagaaagaagt	7	10	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141162101	A	A	141162101	3	1	85	1	0	0	0	0	1	0	0	0	17665	943	33	4	873	4	ZBTB38	3	141162101	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1869697	141162101	56860329	258	88625											
ZBTB38	253461	broad.mit.edu	37	chr3	141162113	141162113	+	Missense_Mutation	SNP	G	A	A													ccaacttagaggttaatcaaGaaagaagtccacaaccagct							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141162113	A	A	141162113	3	1	85	1	0	0	0	0	1	0	0	0	17665	943	33	4	885	4	ZBTB38	3	141162113	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	12	141162113	56860317	259	88626	397	2									
ZBTB38	253461	broad.mit.edu	37	chr3	141162117	141162117	+	Missense_Mutation	SNP	G	A	A													cttagaggttaatcaagaaaGaagtccacaaccagctgctg							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141162117	A	A	141162117	3	1	85	1	0	0	0	0	1	0	0	0	17665	942	33	4	889	4	ZBTB38	3	141162117	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4	141162117	56860313	260	88627	397	2									
SLC9A9	285195	broad.mit.edu	37	chr3	142985598	142985598	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttgagttcatagcctccCaggccgaggtctccctcata	9	14	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142985598	A	A	142985598	2	1	85	1	0	0	0	0	0	0	0	1	14835	581	21	2		2	SLC9A9	3	142985598	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1823481	142985598	55036832	261	88628											
PLOD2	5352	broad.mit.edu	37	chr3	145809621	145809621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgactgtatcgaattcaCaaagagtgcagccattatcc	8	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145809621	A	A	145809621	3	1	85	1	0	0	0	0	1	0	0	0	12197	478	17	3	1483	3	PLOD2	3	145809621	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2824023	145809621	52212809	262	88629											
ZIC1	7545	broad.mit.edu	37	chr3	147130438	147130438	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgcgacaagtcctacacGcatcccagttcgctgcgcaa	9	14	0	0	rs147993210		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147130438	T	T	147130438	2	4	85	1	0	0	0	0	0	0	0	1	17804	1074	38	3		3	ZIC1	3	147130438	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1320817	147130438	50891992	263	88630											
IGSF10	285313	broad.mit.edu	37	chr3	151164733	151164733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccgccaattttcctctgCctcccaaagcgtctgaacag	6	16	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151164733	A	A	151164733	3	1	85	1	0	0	0	0	1	0	0	0	7667	738	26	3	4895	3	IGSF10	3	151164733	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4034295	151164733	46857697	264	88631											
GPR149	344758	broad.mit.edu	37	chr3	154071696	154071696	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacagtctcttcagaaatacGgaaataggagaaagctcttt	8	7	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154071696	C	C	154071696	1	2	85	0	1	0	0	0	0	0	0	0	6719	1131	39	4		4	GPR149	3	154071696	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2906963	154071696	43950734	265	88632											
SI	6476	broad.mit.edu	37	chr3	164741463	164741463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcagtatttagttggagGtcagctgttatacccatgga	11	6	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164741463	T	T	164741463	3	4	85	1	0	0	0	0	1	0	0	0	14410	1252	44	3	2581	3	SI	3	164741463	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	10669767	164741463	33280967	266	88633											
SI	6476	broad.mit.edu	37	chr3	164785153	164785153	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaccgttgcttttcctaaTaacttggatgctaaatgggt	8	7	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164785153	C	C	164785153	3	2	85	1	0	0	0	0	1	0	0	0	14410	1406	49	5	5045	5	SI	3	164785153	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	43690	164785153	33237277	267	88634											
SLITRK3	22865	broad.mit.edu	37	chr3	164907998	164907998	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtaaaaaagaacctttaaCctatttccacgtaggtccaa	6	10	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164907998	T	T	164907998	2	4	85	1	0	0	0	0	0	0	0	1	14858	506	18	4		4	SLITRK3	3	164907998	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	122845	164907998	33114432	268	88635											
ZBBX	79740	broad.mit.edu	37	chr3	167045801	167045801	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctccattgacttaacactTcctgaaaggactgtgcagaa	7	10	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167045801	A	A	167045801	3	1	85	1	0	0	0	0	1	0	0	0	17643	1783	62	5	1655	5	ZBBX	3	167045801	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2137803	167045801	30976629	269	88636											
PLD1	5337	broad.mit.edu	37	chr3	171377175	171377175	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atactgtaatatattttttaAaatgtttcacacagcagatg	5	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171377175	T	T	171377175	1	4	85	0	1	0	0	0	0	0	0	0	12140	29	1	5		5	PLD1	3	171377175	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4331374	171377175	26645255	270	88637											
PEX5L	51555	broad.mit.edu	37	chr3	179615932	179615932	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctatgggtctgcccacctGtgatgtcatagtaaggaggg	13	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179615932	C	C	179615932	3	2	85	1	0	0	0	0	1	0	0	0	11844	1386	48	4	1736	4	PEX5L	3	179615932	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8238757	179615932	18406498	271	88638											
CCDC39	339829	broad.mit.edu	37	chr3	180377327	180377327	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgagttcttgtctttcattAtgaatcttacgaaaatcttg	6	6	5	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180377327	T	T	180377327	3	4	85	1	0	0	0	0	1	0	0	0	2838	446	16	5	2234	5	CCDC39	3	180377327	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	761395	180377327	17645103	272	88639											
ALG3	10195	broad.mit.edu	37	chr3	183960733	183960733	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagttggaggtgaagaggGtagaaacgatctgtatgcgg	17	3	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183960733	A	A	183960733	3	1	85	1	0	0	0	0	1	0	0	0	520	1261	44	4	302	4	ALG3	3	183960733	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3583406	183960733	14061697	273	88640											
EIF4G1	1981	broad.mit.edu	37	chr3	184040320	184040320	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcaaccaaaactggatgttCtgttgttctaggcgaacccg	10	10	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184040320	G	G	184040320	1	3	85	0	1	0	0	0	0	0	0	0	5078	928	32	4		4	EIF4G1	3	184040320	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	79587	184040320	13982110	274	88641											
ATP13A5	344905	broad.mit.edu	37	chr3	193032855	193032855	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatgatgagaagtccCagaaatgttaactctgactc	7	10	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193032855	A	A	193032855	2	1	85	1	0	0	0	0	0	0	0	1	1131	581	21	2		2	ATP13A5	3	193032855	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	8992535	193032855	4989575	275	88642											
FBXO45	200933	broad.mit.edu	37	chr3	196311060	196311060	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataagactttagcttttgaAcgtggatatgagttcctggg	12	5	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196311060	G	G	196311060	2	3	85	1	0	0	0	0	0	0	0	1	5811	40	2	5		5	FBXO45	3	196311060	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	3278205	196311060	1711370	276	88643											
CRMP1	1400	broad.mit.edu	37	chr4	5827139	5827139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagtgtccaaggccacgtGtccatttcctcagaagcagc	9	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5827139	T	T	5827139	1	4	85	0	1	0	0	0	0	0	0	0	3922	1392	48	3		3	CRMP1	4	5827139	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08		5827139	185327137	277	88644											
JAKMIP1	152789	broad.mit.edu	37	chr4	6086622	6086622	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttctgtcttccagcttcCgtatcactgaattcagttca	5	11	5	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6086622	T	T	6086622	3	4	85	1	0	0	0	0	1	0	0	0	8010	652	23	4	1733	4	JAKMIP1	4	6086622	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	259483	6086622	185067654	278	88645											
PPP2R2C	5522	broad.mit.edu	37	chr4	6349785	6349785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaagggcgccctcaatGctccgccttcccggaggttt	12	14	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6349785	T	T	6349785	1	4	85	0	1	0	0	0	0	0	0	0	12487	1334	46	3		3	PPP2R2C	4	6349785	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	263163	6349785	184804491	279	88646											
GPR125	166647	broad.mit.edu	37	chr4	22389682	22389682	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccggcttttaggtaagccGttctgcacgcttccttccac	9	14	1	0	rs146569496		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22389682	A	A	22389682	2	1	85	1	0	0	0	0	0	0	0	1	6704	1136	40	4		4	GPR125	4	22389682	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	16039897	22389682	168764594	280	88647											
CCKAR	886	broad.mit.edu	37	chr4	26491865	26491865	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgttgcttccattcaCaagaaggctgtcaaccacat	8	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26491865	G	G	26491865	3	3	85	1	0	0	0	0	1	0	0	0	2908	478	17	4	1281	4	CCKAR	4	26491865	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4102183	26491865	164662411	281	88648											
ARAP2	116984	broad.mit.edu	37	chr4	36093500	36093500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacgcatgttcaaatactaTaccttcacatccttgtaaag	5	10	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36093500	C	C	36093500	1	2	85	0	1	0	0	0	0	0	0	0	841	1421	49	5		5	ARAP2	4	36093500	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	9601635	36093500	155060776	282	88649											
APBB2	323	broad.mit.edu	37	chr4	40829091	40829091	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagaaccatctgagagccttCagtcctggaccaggagggac	13	11	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40829091	G	G	40829091	1	3	85	0	1	0	0	0	0	0	0	0	763	841	29	4		4	APBB2	4	40829091	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4735591	40829091	150325185	283	88650											
SLC30A9	10463	broad.mit.edu	37	chr4	42003584	42003584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcttggcaattaattatGcagctaggacttggtttgaa	12	5	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42003584	T	T	42003584	1	4	85	0	1	0	0	0	0	0	0	0	14676	1334	46	3		3	SLC30A9	4	42003584	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1174493	42003584	149150692	284	88651											
KCTD8	386617	broad.mit.edu	37	chr4	44176935	44176935	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttccacacttagcttctCacagactttctttttggaca	4	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44176935	G	G	44176935	3	3	85	1	0	0	0	0	1	0	0	0	8185	835	29	4	131	4	KCTD8	4	44176935	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2173351	44176935	146977341	285	88652											
GABRA4	2557	broad.mit.edu	37	chr4	46930674	46930674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaactgtggaagatttGcttgaatggtttcccacctc	9	9	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46930674	T	T	46930674	3	4	85	1	0	0	0	0	1	0	0	0	6223	1310	46	3	435	3	GABRA4	4	46930674	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2753739	46930674	144223602	286	88653											
CORIN	10699	broad.mit.edu	37	chr4	47605386	47605386	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtatgtgcttatagcagcAtgagaatggactaatacact	10	6	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47605386	T	T	47605386	1	4	85	0	1	0	0	0	0	0	0	0	3784	232	8	5		5	CORIN	4	47605386	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	674712	47605386	143548890	287	88654											
LRRC66	339977	broad.mit.edu	37	chr4	52863952	52863952	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacattccactttttcctcCaggattcagaaataaaattt	4	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52863952	T	T	52863952	4	4	85	1	0	0	0	0	0	1	0	0	9105	595	21	4	1832	4	LRRC66	4	52863952	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5258566	52863952	138290324	288	88655											
KIT	3815	broad.mit.edu	37	chr4	55604780	55604780	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcttcttttggcttccatGatggttattttcttttcttt	5	8	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55604780	A	A	55604780	1	1	85	0	1	0	0	0	0	0	0	0	8400	1305	45	4		4	KIT	4	55604780	3'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2740828	55604780	135549496	289	88656											
KDR	3791	broad.mit.edu	37	chr4	55958791	55958791	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacctttcttacctttcgcGatgccaagaactccatgccc	5	16	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55958791	A	A	55958791	3	1	85	1	0	0	0	0	1	0	0	0	8209	1059	37	4	1044	4	KDR	4	55958791	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	354011	55958791	135195485	290	88657											
KIAA1211	57482	broad.mit.edu	37	chr4	57176739	57176739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacccctgtgtagaggagGgggtgaccctacccaggcac	14	13	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57176739	T	T	57176739	1	4	85	0	1	0	0	0	0	0	0	0	8285	1247	43	2		2	KIAA1211	4	57176739	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1217948	57176739	133977537	291	88658											
ARL9	132946	broad.mit.edu	37	chr4	57384799	57384799	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccctgggtgggtgcttctGtgattttgtgtgtgtgtgtc	15	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57384799	A	A	57384799	1	1	85	0	1	0	0	0	0	0	0	0	952	1392	48	4		4	ARL9	4	57384799	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	208060	57384799	133769477	292	88659											
C4orf14	84273	broad.mit.edu	37	chr4	57843023	57843023	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actttgtttcccagcacgatCagctgcttggggcccaccag	10	14	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57843023	T	T	57843023	2	4	85	1	0	0	0	0	0	0	0	1	2274	813	29	4		4	C4orf14	4	57843023	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	458224	57843023	133311253	293	88660											
TECRL	253017	broad.mit.edu	37	chr4	65180521	65180521	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagattaaacgataaaaataGatgtttttaaggttcatttg	7	2	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65180521	T	T	65180521	1	4	85	0	1	0	0	0	0	0	0	0	15868	957	33	3		3	TECRL	4	65180521	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7337498	65180521	125973755	294	88661											
UGT2B10	7365	broad.mit.edu	37	chr4	69884051	69884051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttaaaattccaggagtttCgcataagccatatgtcagct	7	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69884051	A	A	69884051	3	1	85	1	0	0	0	0	1	0	0	0	17082	884	31	3	2444	3	UGT2B10	4	69884051	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4703530	69884051	121270225	295	88662											
UGT2B4	7363	broad.mit.edu	37	chr4	70360959	70360959	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattttttaccctctctatGaaagtcatttggtcacttag	5	8	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70360959	C	C	70360959	3	2	85	1	0	0	0	0	1	0	0	0	17087	1281	45	4	989	4	UGT2B4	4	70360959	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	476908	70360959	120793317	296	88663											
SULT1E1	6783	broad.mit.edu	37	chr4	70719902	70719902	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctatcatttcttggaattgGatgaagttttgagaacactt	8	5	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70719902	A	A	70719902	1	1	85	0	1	0	0	0	0	0	0	0	15498	1189	41	4		4	SULT1E1	4	70719902	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	358943	70719902	120434374	297	88664											
GC	2638	broad.mit.edu	37	chr4	72631257	72631257	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtttcagagcagccatgCagagctttcgttccaggccc	12	12	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72631257	G	G	72631257	3	3	85	1	0	0	0	0	1	0	0	0	6344	710	25	4	1095	4	GC	4	72631257	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1911355	72631257	118523019	298	88665											
ADAMTS3	9508	broad.mit.edu	37	chr4	73186481	73186481	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttaaaaaaattgcatggTcatggtgttcagagtggttg	13	3	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73186481	G	G	73186481	3	3	85	1	0	0	0	0	1	0	0	0	267	1667	58	5	2629	5	ADAMTS3	4	73186481	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	555224	73186481	117967795	299	88666											
BTC	685	broad.mit.edu	37	chr4	75681169	75681169	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaagtggcctttccgctTtgattgtgtggtggtagctg	15	6	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75681169	G	G	75681169	3	3	85	1	0	0	0	0	1	0	0	0	1559	1850	64	5	367	5	BTC	4	75681169	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2494688	75681169	115473107	300	88667											
C4orf26	152816	broad.mit.edu	37	chr4	76489658	76489658	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaagctgagagggaagAgaaacccaaacatactgaag	13	6	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76489658	C	C	76489658	1	2	85	0	1	0	0	0	0	0	0	0	2280	319	11	5		5	C4orf26	4	76489658	3'UTR	SNP	A	TCGA-17-Z056-01A-01W-0747-08	808489	76489658	114664618	301	88668											
SPARCL1	8404	broad.mit.edu	37	chr4	88400665	88400665	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacactcctcaaagaaacggGttatgcagtgttccatgggc	10	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88400665	A	A	88400665	3	1	85	1	0	0	0	0	1	0	0	0	15112	1261	44	4	119	4	SPARCL1	4	88400665	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	11911007	88400665	102753611	302	88669											
PDHA2	5161	broad.mit.edu	37	chr4	96761628	96761628	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggccggcataaacccctcGgatcacgtcattacatccta	8	14	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96761628	C	C	96761628	2	2	85	1	0	0	0	0	0	0	0	1	11759	1103	39	4		4	PDHA2	4	96761628	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8360963	96761628	94392648	303	88670											
BANK1	55024	broad.mit.edu	37	chr4	102776101	102776102	+	Intron	INS	-	T	T													tcggtttcccgtatattaaaINSttggttgtttagcaattagt							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102776102	T	T	102776101	6	5	85	0	1	1	1	0	0	0	0	0	1314	116	4	0		0	BANK1	4	102776101	Intron	INS	-	TCGA-17-Z056-01A-01W-0747-08	6014473	102776101	88378175	304	88671											
CENPE	1062	broad.mit.edu	37	chr4	104068758	104068758	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctgagtctcactgacttCtttcacattaggcagtaact	6	11	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104068758	T	T	104068758	3	4	85	1	0	0	0	0	1	0	0	0	3260	922	32	4	4300	4	CENPE	4	104068758	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1292657	104068758	87085518	305	88672											
SYNPO2	171024	broad.mit.edu	37	chr4	119978565	119978565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtttttaggagagtgggCgctccctttctcttcctgga	11	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119978565	A	A	119978565	3	1	85	1	0	0	0	0	1	0	0	0	15576	768	27	3	3392	3	SYNPO2	4	119978565	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	15909807	119978565	71175711	306	88673											
QRFPR	84109	broad.mit.edu	37	chr4	122254246	122254246	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattcattaaaagaaccagTagtcagcatcaaaaaacaga	5	7	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122254246	C	C	122254246	1	2	85	0	1	0	0	0	0	0	0	0	12986	1653	57	5		5	QRFPR	4	122254246	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2275681	122254246	68900030	307	88674											
TRPC3	7222	broad.mit.edu	37	chr4	122853999	122853999	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtccacgcagttgacgttCagcgtcttggactcctccag	10	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122853999	A	A	122853999	2	1	85	1	0	0	0	0	0	0	0	1	16704	813	29	3		3	TRPC3	4	122853999	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	599753	122853999	68300277	308	88675											
KIAA1109	84162	broad.mit.edu	37	chr4	123222457	123222457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcttctttcctttaggtGgggagcagcctattcctctc	8	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123222457	T	T	123222457	3	4	85	1	0	0	0	0	1	0	0	0	8278	1348	47	2	9601	2	KIAA1109	4	123222457	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	368458	123222457	67931819	309	88676											
ANKRD50	57182	broad.mit.edu	37	chr4	125599824	125599824	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatggcagtaagtaattaTgcttaccagtaaacatttta	8	5	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125599824	C	C	125599824	1	2	85	0	1	0	0	0	0	0	0	0	677	1479	51	5		5	ANKRD50	4	125599824	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2377367	125599824	65554452	310	88677											
FAT4	79633	broad.mit.edu	37	chr4	126389741	126389741	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acatggaatttccaagcttgGaccccaataacaactatatt	5	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126389741	C	C	126389741	3	2	85	1	0	0	0	0	1	0	0	0	5749	1174	41	4	12016	4	FAT4	4	126389741	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	789917	126389741	64764535	311	88678											
LRBA	987	broad.mit.edu	37	chr4	151511846	151511847	+	Intron	INS	-	A	A													agaggtagctgaaatatctgINScacaaccaccaaatttaccg							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151511847	A	A	151511846	6	5	85	0	1	1	1	0	0	0	0	0	9018	1334	46	0		0	LRBA	4	151511846	Intron	INS	-	TCGA-17-Z056-01A-01W-0747-08	25122105	151511846	39642430	312	88679											
FGA	2243	broad.mit.edu	37	chr4	155507932	155507932	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtggtaagtgttgcctatCtctagagggaagtaagtctt	12	6	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155507932	A	A	155507932	3	1	85	1	0	0	0	0	1	0	0	0	5887	913	32	3	2003	3	FGA	4	155507932	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3996086	155507932	35646344	313	88680											
RXFP1	59350	broad.mit.edu	37	chr4	159533240	159533240	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttttcttattgtaagacatCaaaaatatacaaatttattg	3	5	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159533240	T	T	159533240	1	4	85	0	1	0	0	0	0	0	0	0	13870	841	29	4		4	RXFP1	4	159533240	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4025308	159533240	31621036	314	88681											
RXFP1	59350	broad.mit.edu	37	chr4	159533309	159533309	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcataacagaataaccttCctgaagccgggtgtttttga	9	8	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159533309	T	T	159533309	2	4	85	1	0	0	0	0	0	0	0	1	13870	854	30	4		4	RXFP1	4	159533309	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	69	159533309	31620967	315	88682											
KLHL2	11275	broad.mit.edu	37	chr4	166235342	166235342	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcagtttaaggttataAaacttatgttgaattttatt	6	3	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166235342	C	C	166235342	1	2	85	0	1	0	0	0	0	0	0	0	8445	29	1	5		5	KLHL2	4	166235342	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	6702033	166235342	24918934	316	88683											
DDX60L	91351	broad.mit.edu	37	chr4	169342946	169342946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacacaaccaccccgacatCgctctccctcagcactttct	4	19	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169342946	A	A	169342946	3	1	85	1	0	0	0	0	1	0	0	0	4412	884	31	3	2849	3	DDX60L	4	169342946	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3107604	169342946	21811330	317	88684											
MFAP3L	9848	broad.mit.edu	37	chr4	170913210	170913210	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaactcattgatggccttCtcagtcttctttagatggct	8	9	4	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170913210	G	G	170913210	3	3	85	1	0	0	0	0	1	0	0	0	9609	912	32	4	684	4	MFAP3L	4	170913210	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1570264	170913210	20241066	318	88685											
GALNTL6	442117	broad.mit.edu	37	chr4	173232803	173232803	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccttacccccttactgaaGaggaccatgatgactcagct	7	13	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173232803	A	A	173232803	3	1	85	1	0	0	0	0	1	0	0	0	6287	943	33	4	296	4	GALNTL6	4	173232803	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2319593	173232803	17921473	319	88686											
ACSL1	2180	broad.mit.edu	37	chr4	185681563	185681563	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacaggctcacttcgcatgTagatattttcaatcttttca	5	10	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185681563	C	C	185681563	3	2	85	1	0	0	0	0	1	0	0	0	177	1638	57	5	382	5	ACSL1	4	185681563	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	12448760	185681563	5472713	320	88687											
CYP4V2	285440	broad.mit.edu	37	chr4	187118744	187118744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgattccgagtatgtccGtgcagtttataggtaaatgg	12	5	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187118744	T	T	187118744	3	4	85	1	0	0	0	0	1	0	0	0	4225	1145	40	3	680	3	CYP4V2	4	187118744	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1437181	187118744	4035532	321	88688											
ZFP42	132625	broad.mit.edu	37	chr4	188923993	188923993	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgaagaaacgggcaaagaCaagacaccagaaaggcctgg	12	9	0	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	188923993	G	G	188923993	3	3	85	1	0	0	0	0	1	0	0	0	17776	478	17	4	34	4	ZFP42	4	188923993	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1805249	188923993	2230283	322	88689											
ADCY2	108	broad.mit.edu	37	chr5	7820767	7820767	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactgtcaatgtggccagtAggatggacagcaccggagtc	13	10	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7820767	G	G	7820767	3	3	85	1	0	0	0	0	1	0	0	0	294	411	15	5	3182	5	ADCY2	5	7820767	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08		7820767	173094493	323	88690											
ROPN1L	83853	broad.mit.edu	37	chr5	10449994	10449994	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttacttggtgtgtgttgaaTattcacagcattcattgttt	9	5	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10449994	C	C	10449994	1	2	85	0	1	0	0	0	0	0	0	0	13636	1421	49	5		5	ROPN1L	5	10449994	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2629227	10449994	170465266	324	88691											
CTNND2	1501	broad.mit.edu	37	chr5	11098920	11098920	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttatgcttcccaactttgCcttcctcaaacattacaggc	4	14	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11098920	T	T	11098920	1	4	85	0	1	0	0	0	0	0	0	0	4054	754	26	4		4	CTNND2	5	11098920	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	648926	11098920	169816340	325	88692											
CTNND2	1501	broad.mit.edu	37	chr5	11346536	11346536	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacctggccaaggtgccttCaggcgggagagcagggccgg	19	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11346536	G	G	11346536	3	3	85	1	0	0	0	0	1	0	0	0	4054	835	29	4	2157	4	CTNND2	5	11346536	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	247616	11346536	169568724	326	88693											
DNAH5	1767	broad.mit.edu	37	chr5	13714464	13714464	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcctcactctcccaacCgaagatatgcaaccccagct	4	17	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13714464	T	T	13714464	1	4	85	0	1	0	0	0	0	0	0	0	4644	667	23	4		4	DNAH5	5	13714464	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2367928	13714464	167200796	327	88694											
DNAH5	1767	broad.mit.edu	37	chr5	13776554	13776554	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttccatactaaccagcaaCtaaagcatctttgggccatc	5	12	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13776554	G	G	13776554	3	3	85	1	0	0	0	0	1	0	0	0	4644	565	20	4	4607	4	DNAH5	5	13776554	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	62090	13776554	167138706	328	88695											
CDH12	1010	broad.mit.edu	37	chr5	21765012	21765012	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaatatatgtgtgcatattCatgtctggacttataactta	6	6	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21765012	A	A	21765012	1	1	85	0	1	0	0	0	0	0	0	0	3128	841	29	3		3	CDH12	5	21765012	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7988458	21765012	159150248	329	88696											
CDH12	1010	broad.mit.edu	37	chr5	21817276	21817276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttgaattgacagtggGgttagtaagagatatagtaa	11	1	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21817276	T	T	21817276	1	4	85	0	1	0	0	0	0	0	0	0	3128	1247	43	2		2	CDH12	5	21817276	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	52264	21817276	159097984	330	88697											
PRDM9	56979	broad.mit.edu	37	chr5	23523296	23523296	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtggtctcaattggcaGctgaagctatgcaggcccaa	11	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23523296	C	C	23523296	1	2	85	0	1	0	0	0	0	0	0	0	12569	986	34	4		4	PRDM9	5	23523296	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1706020	23523296	157391964	331	88698											
PRDM9	56979	broad.mit.edu	37	chr5	23527714	23527714	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgcagggagtgtgggcgGggctttcgcaataagtcaca	16	8	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23527714	T	T	23527714	2	4	85	1	0	0	0	0	0	0	0	1	12569	1219	43	2		2	PRDM9	5	23527714	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4418	23527714	157387546	332	88699											
CDH10	1008	broad.mit.edu	37	chr5	24511369	24511369	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaatggatcattcatgagcGaagagtatataatgcaatcc	8	8	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24511369	C	C	24511369	1	2	85	0	1	0	0	0	0	0	0	0	3126	1073	37	4		4	CDH10	5	24511369	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	983655	24511369	156403891	333	88700											
CDH9	1007	broad.mit.edu	37	chr5	26906015	26906015	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgaatattaaactcggcTactagtgtatttgagaagtt	9	4	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906015	A	A	26906015	1	1	85	0	1	0	0	0	0	0	0	0	3147	1537	53	5		5	CDH9	5	26906015	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2394646	26906015	154009245	334	88701											
CDH6	1004	broad.mit.edu	37	chr5	31317544	31317544	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggacaccaattttcgttTtccttggcccctgaagcagc	9	12	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31317544	C	C	31317544	2	2	85	1	0	0	0	0	0	0	0	1	3144	1838	64	5		5	CDH6	5	31317544	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	4411529	31317544	149597716	335	88702											
PDZD2	23037	broad.mit.edu	37	chr5	31983777	31983777	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacgggtaaggtttggtttGattatggaaccagaatttta	12	4	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31983777	C	C	31983777	1	2	85	0	1	0	0	0	0	0	0	0	11795	1305	45	4		4	PDZD2	5	31983777	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	666233	31983777	148931483	336	88703											
MTMR12	54545	broad.mit.edu	37	chr5	32239198	32239198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggatgaggctctggaaaCcaattctggttctgcagtgg	13	7	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32239198	A	A	32239198	3	1	85	1	0	0	0	0	1	0	0	0	10035	507	18	3	1006	3	MTMR12	5	32239198	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	255421	32239198	148676062	337	88704											
SPEF2	79925	broad.mit.edu	37	chr5	35700910	35700910	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaaaactctttgttctttGaatcagtgaatactcccatt	5	8	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35700910	C	C	35700910	1	2	85	0	1	0	0	0	0	0	0	0	15153	1305	45	4		4	SPEF2	5	35700910	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3461712	35700910	145214350	338	88705											
SPEF2	79925	broad.mit.edu	37	chr5	35753611	35753611	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatacaggagtgcaattggtGtaaaatttctttagagacat	9	4	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35753611	A	A	35753611	1	1	85	0	1	0	0	0	0	0	0	0	15153	1392	48	4		4	SPEF2	5	35753611	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	52701	35753611	145161649	339	88706											
SLC1A3	6507	broad.mit.edu	37	chr5	36679975	36679975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaaggtatgtatgtatGtgtggaaaatgagtctgaaa	11	3	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36679975	T	T	36679975	1	4	85	0	1	0	0	0	0	0	0	0	14546	1392	48	3		3	SLC1A3	5	36679975	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	926364	36679975	144235285	340	88707											
NIPBL	25836	broad.mit.edu	37	chr5	37006594	37006594	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaaagctgtgtacattgagGatgtaattgaaagagttata	10	3	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37006594	A	A	37006594	3	1	85	1	0	0	0	0	1	0	0	0	10523	1174	41	4	4053	4	NIPBL	5	37006594	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	326619	37006594	143908666	341	88708											
C5orf42	65250	broad.mit.edu	37	chr5	37183732	37183732	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttgtaggattttctttCtgattacacattttcctttt	4	7	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37183732	G	G	37183732	3	3	85	1	0	0	0	0	1	0	0	0	2324	912	32	4	5150	4	C5orf42	5	37183732	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	177138	37183732	143731528	342	88709											
C5orf42	65250	broad.mit.edu	37	chr5	37198949	37198949	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttttttcagcttttaaaAgaagatcatcaccatcttcc	3	9	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37198949	T	T	37198949	3	4	85	1	0	0	0	0	1	0	0	0	2324	72	3	5	6198	5	C5orf42	5	37198949	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	15217	37198949	143716311	343	88710											
WDR70	55100	broad.mit.edu	37	chr5	37506782	37506782	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcacacacaaataaaacatCatcatccctgatcaaagcaa	2	13	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37506782	T	T	37506782	1	4	85	0	1	0	0	0	0	0	0	0	17448	841	29	4		4	WDR70	5	37506782	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	307833	37506782	143408478	344	88711											
C9	735	broad.mit.edu	37	chr5	39306622	39306622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtatctgaatgttcacGtctctttcagatgaagctaa	9	7	4	3	rs140858634	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39306622	T	T	39306622	1	4	85	0	1	0	0	0	0	0	0	0	2469	1160	40	3		3	C9	5	39306622	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1799840	39306622	141608638	345	88712											
HMGCS1	3157	broad.mit.edu	37	chr5	43293064	43293064	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaacttgctgttattttatCaagagcagaccctaaaatag	6	7	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43293064	G	G	43293064	3	3	85	1	0	0	0	0	1	0	0	0	7299	826	29	4	379	4	HMGCS1	5	43293064	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3986442	43293064	137622196	346	88713											
FST	10468	broad.mit.edu	37	chr5	52781418	52781418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcttcatattatcacaCatgggctgctgctttttgca	8	10	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52781418	A	A	52781418	1	1	85	0	1	0	0	0	0	0	0	0	6136	493	17	3		3	FST	5	52781418	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	9488354	52781418	128133842	347	88714											
GZMA	3001	broad.mit.edu	37	chr5	54403954	54403954	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgtttttcttccaacagcTgatggaaaaagcaaaaatta	6	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54403954	A	A	54403954	3	1	85	1	0	0	0	0	1	0	0	0	6980	1594	55	5	373	5	GZMA	5	54403954	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1622536	54403954	126511306	348	88715											
HTR1A	3350	broad.mit.edu	37	chr5	63256369	63256369	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatgacggggttaagcagaGagttggagtagcccagccaa	14	7	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63256369	A	A	63256369	3	1	85	1	0	0	0	0	1	0	0	0	7506	942	33	4	93	4	HTR1A	5	63256369	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8852415	63256369	117658891	349	88716											
TMEM171	134285	broad.mit.edu	37	chr5	72419374	72419374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagactgccccatggtGctcaaggtggcggggcctgc	14	15	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72419374	T	T	72419374	2	4	85	1	0	0	0	0	0	0	0	1	16211	1306	46	3		3	TMEM171	5	72419374	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	9163005	72419374	108495886	350	88717											
SV2C	22987	broad.mit.edu	37	chr5	75427582	75427582	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagttgagataagatggaaGactcttacaaggataggact	11	5	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75427582	C	C	75427582	3	2	85	1	0	0	0	0	1	0	0	0	15537	942	33	4	9	4	SV2C	5	75427582	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3008208	75427582	105487678	351	88718											
BHMT	635	broad.mit.edu	37	chr5	78421881	78421881	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcacaggagcatccatcaTtggtgtgaactgccactttg	9	11	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78421881	A	A	78421881	3	1	85	1	0	0	0	0	1	0	0	0	1431	1493	52	5	660	5	BHMT	5	78421881	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2994299	78421881	102493379	352	88719											
CMYA5	202333	broad.mit.edu	37	chr5	79026737	79026737	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgaagaaaacaattgacCgtaagtccccgttaatattg	7	9	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79026737	G	G	79026737	3	3	85	1	0	0	0	0	1	0	0	0	3622	652	23	4	2155	4	CMYA5	5	79026737	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	604856	79026737	101888523	353	88720											
XRCC4	7518	broad.mit.edu	37	chr5	82576285	82576285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcacatatctccttagGcaaaattgaggtatgtagta	8	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82576285	T	T	82576285	1	4	85	0	1	0	0	0	0	0	0	0	17582	1218	42	3		3	XRCC4	5	82576285	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3549548	82576285	98338975	354	88721											
EDIL3	10085	broad.mit.edu	37	chr5	83239258	83239258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattcctcctctgtgcagcCcagcagctctgaccgcaatg	8	16	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83239258	A	A	83239258	3	1	85	1	0	0	0	0	1	0	0	0	4955	623	22	2	23	2	EDIL3	5	83239258	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	662973	83239258	97676002	355	88722											
POLR3G	10622	broad.mit.edu	37	chr5	89808000	89808000	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatgatgcagcttctgaAcatttggacagacttgattt	8	6	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89808000	C	C	89808000	1	2	85	0	1	0	0	0	0	0	0	0	12329	58	2	5		5	POLR3G	5	89808000	3'UTR	SNP	A	TCGA-17-Z056-01A-01W-0747-08	6568742	89808000	91107260	356	88723											
NR2F1	7025	broad.mit.edu	37	chr5	92923849	92923849	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgcctgctcttcagcgcCgtcgagtgggcccgcaacat	13	16	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92923849	A	A	92923849	2	1	85	1	0	0	0	0	0	0	0	1	10722	639	23	1		1	NR2F1	5	92923849	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3115849	92923849	87991411	357	88724											
TTC37	9652	broad.mit.edu	37	chr5	94805685	94805685	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaagtattcaattcaattCtttttttttttttgagacgg	6	4	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94805685	T	T	94805685	1	4	85	0	1	0	0	0	0	0	0	0	16831	928	32	4		4	TTC37	5	94805685	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1881836	94805685	86109575	358	88725											
RIOK2	55781	broad.mit.edu	37	chr5	96518748	96518748	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcccagagtgtgcctgctCagatcccagaaaacttgcag	11	12	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96518748	G	G	96518748	1	3	85	0	1	0	0	0	0	0	0	0	13489	841	29	4		4	RIOK2	5	96518748	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1713063	96518748	84396512	359	88726											
SLCO6A1	133482	broad.mit.edu	37	chr5	101774323	101774323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagaaggtaaatctacctGcaagtgtagttgccacagtg	10	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101774323	T	T	101774323	3	4	85	1	0	0	0	0	1	0	0	0	14846	1319	46	3	913	3	SLCO6A1	5	101774323	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5255575	101774323	79140937	360	88727											
PPIP5K2	23262	broad.mit.edu	37	chr5	102522093	102522093	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcacctaacctacaggattAtgctcgtactcatcgtaaaa	6	12	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102522093	C	C	102522093	3	2	85	1	0	0	0	0	1	0	0	0	12434	449	16	5	3344	5	PPIP5K2	5	102522093	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	747770	102522093	78393167	361	88728											
APC	324	broad.mit.edu	37	chr5	112174637	112174637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagaaacaaatcgagtgGgttctaatcatggaattaat	9	5	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112174637	T	T	112174637	3	4	85	1	0	0	0	0	1	0	0	0	765	1232	43	2	3404	2	APC	5	112174637	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	9652544	112174637	68740623	362	88729											
APC	324	broad.mit.edu	37	chr5	112179485	112179485	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattcaggtggatgcccctGaccaaaaaggaactgagata	10	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112179485	T	T	112179485	3	4	85	1	0	0	0	0	1	0	0	0	765	1290	45	3	8252	3	APC	5	112179485	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4848	112179485	68735775	363	88730											
AQPEP	206338	broad.mit.edu	37	chr5	115323402	115323402	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttattatgcagcttcttcTggaaaggtaagactttggtt	9	5	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115323402	A	A	115323402	1	1	85	0	1	0	0	0	0	0	0	0	836	1595	55	5		5	AQPEP	5	115323402	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3143917	115323402	65591858	364	88731											
FBN2	2201	broad.mit.edu	37	chr5	127627160	127627160	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taataccagcatgatggtttAcaattcagctttaaagtttc	6	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127627160	T	T	127627160	1	4	85	0	1	0	0	0	0	0	0	0	5760	406	14	5		5	FBN2	5	127627160	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	12303758	127627160	53288100	365	88732											
SLC27A6	28965	broad.mit.edu	37	chr5	128365350	128365350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaaagtttatgaacaaGttgtaacatttctaccagct	7	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128365350	T	T	128365350	3	4	85	1	0	0	0	0	1	0	0	0	14644	1029	36	3	1667	3	SLC27A6	5	128365350	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	738190	128365350	52549910	366	88733											
ACSL6	23305	broad.mit.edu	37	chr5	131308932	131308932	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatatgcagcccctcagccTggctgaagactccctgcaga	9	14	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131308932	A	A	131308932	1	1	85	0	1	0	0	0	0	0	0	0	181	1595	55	5		5	ACSL6	5	131308932	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2943582	131308932	49606328	367	88734											
RAD50	10111	broad.mit.edu	37	chr5	131939049	131939049	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaattaagaaacaaactgcaGaatgtcaatagagacataca	7	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131939049	C	C	131939049	3	2	85	1	0	0	0	0	1	0	0	0	13092	933	33	4	2319	4	RAD50	5	131939049	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	630117	131939049	48976211	368	88735											
PPP2CA	5515	broad.mit.edu	37	chr5	133536187	133536187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaagtcacacattggacCctaaaaaataacttcaagtt	5	10	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133536187	A	A	133536187	3	1	85	1	0	0	0	0	1	0	0	0	12481	637	22	2	364	2	PPP2CA	5	133536187	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1597138	133536187	47379073	369	88736											
TGFBI	7045	broad.mit.edu	37	chr5	135391445	135391445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgttcacgatggaccGggtgctgacccccccaatgg	12	15	1	1	rs114295767	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135391445	T	T	135391445	3	4	85	1	0	0	0	0	1	0	0	0	15943	1116	39	1	1529	1	TGFBI	5	135391445	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1855258	135391445	45523815	370	88737											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139819923	139819923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatttatttttgtcacttaTaagatagattataattagag	5	2	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139819923	C	C	139819923	1	2	85	0	1	0	0	0	0	0	0	0	629	1421	49	5		5	ANKHD1-EIF4EBP3	5	139819923	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	4428478	139819923	41095337	371	88738											
TMCO6	55374	broad.mit.edu	37	chr5	140023223	140023223	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgttggacttggctgGggctgtccagaaaaccgagg	16	9	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140023223	C	C	140023223	3	2	85	1	0	0	0	0	1	0	0	0	16123	1232	43	4	911	4	TMCO6	5	140023223	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	203300	140023223	40892037	372	88739											
PCDHA9	9752	broad.mit.edu	37	chr5	140229258	140229259	+	Frame_Shift_Ins	INS	-	G	G													tgctccctgacgccccacgtINSccccttcaagctggtgtcca					rs138948867	byFrequency	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140229259	G	G	140229258	7	5	85	1	0	1	1	0	0	0	0	0	11625	1667	58	0	1180	0	PCDHA9	5	140229258	Frame_Shift_Ins	INS	-	TCGA-17-Z056-01A-01W-0747-08	206035	140229258	40686002	373	88740											
PCDHB11	56125	broad.mit.edu	37	chr5	140581362	140581362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcccagccctacctgcCgctccctgaggcggcaccgg	10	20	1	1	rs140365279	byFrequency	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140581362	A	A	140581362	3	1	85	1	0	0	0	0	1	0	0	0	11630	652	23	1	2017	1	PCDHB11	5	140581362	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	352104	140581362	40333898	374	88741											
PCDHB14	56122	broad.mit.edu	37	chr5	140605286	140605286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctttccagggcatctgGtggacgtgagcggcaccggg	16	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605286	T	T	140605286	3	4	85	1	0	0	0	0	1	0	0	0	11633	1261	44	3	2211	3	PCDHB14	5	140605286	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	23924	140605286	40309974	375	88742											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712241	140712241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcacgctcaccgtggccGtggccgacaggatctccgac	12	16	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140712241	T	T	140712241	3	4	85	1	0	0	0	0	1	0	0	0	11644	1145	40	3	1992	3	PCDHGA1	5	140712241	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	106955	140712241	40203019	376	88743											
ARAP3	64411	broad.mit.edu	37	chr5	141049954	141049954	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctcacccccaggaccCcagcccattcccaggcatgg	7	21	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141049954	A	A	141049954	1	1	85	0	1	0	0	0	0	0	0	0	842	638	22	2		2	ARAP3	5	141049954	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	337713	141049954	39865306	377	88744											
NDFIP1	80762	broad.mit.edu	37	chr5	141517532	141517532	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttatttcagtgtgttaaAtgatttttggtttgtctgtg	10	2	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141517532	T	T	141517532	1	4	85	0	1	0	0	0	0	0	0	0	10340	116	4	5		5	NDFIP1	5	141517532	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	467578	141517532	39397728	378	88745											
POU4F3	5459	broad.mit.edu	37	chr5	145719677	145719677	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccaaagcaccatctgCaggttcgagtctctcactct	8	14	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145719677	T	T	145719677	2	4	85	1	0	0	0	0	0	0	0	1	12376	718	25	4		4	POU4F3	5	145719677	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4202145	145719677	35195583	379	88746											
GPR151	134391	broad.mit.edu	37	chr5	145895451	145895451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctgagattcagaatcaGggagtggatcatggatggct	15	6	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145895451	T	T	145895451	3	4	85	1	0	0	0	0	1	0	0	0	6722	991	35	2	1037	2	GPR151	5	145895451	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	175774	145895451	35019809	380	88747											
GRPEL2	134266	broad.mit.edu	37	chr5	148730755	148730755	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagcctggcaccgtggcAttagtaagacaagatggcta	13	9	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148730755	T	T	148730755	2	4	85	1	0	0	0	0	0	0	0	1	6873	204	8	5		5	GRPEL2	5	148730755	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	2835304	148730755	32184505	381	88748											
TNIP1	10318	broad.mit.edu	37	chr5	150443136	150443136	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatttgggcagtttggggTacagggagagtcagaggtac	18	4	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150443136	A	A	150443136	1	1	85	0	1	0	0	0	0	0	0	0	16437	1653	57	5		5	TNIP1	5	150443136	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1712381	150443136	30472124	382	88749											
ATP10B	23120	broad.mit.edu	37	chr5	160071224	160071224	+	Frame_Shift_Del	DEL	G	-	-													agaagactctcacagccaaaGccagtcctggtctggtcagg							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160071224	-	-	160071224	7	5	85	1	0	1	0	1	0	0	0	0	1121	958	34	0	3668	0	ATP10B	5	160071224	Frame_Shift_Del	DEL	G	TCGA-17-Z056-01A-01W-0747-08	9628088	160071224	20844036	383	88750											
GABRB2	2561	broad.mit.edu	37	chr5	160886748	160886748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatcaggcacccagagctGgtctgccactctgttgtcca	11	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160886748	T	T	160886748	3	4	85	1	0	0	0	0	1	0	0	0	6227	1357	47	2	1226	2	GABRB2	5	160886748	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	815524	160886748	20028512	384	88751											
GABRA6	2559	broad.mit.edu	37	chr5	161128507	161128507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgtcttttttccacagcatCctgactccaaatatcatctg	4	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161128507	A	A	161128507	3	1	85	1	0	0	0	0	1	0	0	0	6225	855	30	3	1124	3	GABRA6	5	161128507	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	241759	161128507	19786753	385	88752											
GABRA1	2554	broad.mit.edu	37	chr5	161281319	161281319	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttttagagaataatatgaGatctttactatcacagcctt	6	6	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161281319	T	T	161281319	1	4	85	0	1	0	0	0	0	0	0	0	6220	957	33	3		3	GABRA1	5	161281319	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	152812	161281319	19633941	386	88753											
CCDC99	54908	broad.mit.edu	37	chr5	169021341	169021341	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttttccaatttatcataActtattttcttgctaatgta	3	6	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169021341	G	G	169021341	1	3	85	0	1	0	0	0	0	0	0	0	2904	58	2	5		5	CCDC99	5	169021341	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	7740022	169021341	11893919	387	88754											
NSD1	64324	broad.mit.edu	37	chr5	176721339	176721339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggccaccagcagtggcaGgaccaagaccccagctaagc	11	15	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176721339	A	A	176721339	3	1	85	1	0	0	0	0	1	0	0	0	10764	1001	35	4	7056	4	NSD1	5	176721339	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7699998	176721339	4193921	388	88755											
FLT4	2324	broad.mit.edu	37	chr5	180030131	180030131	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcccagcctgggcctccaGccctctgcccgccctgccgg	11	21	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180030131	T	T	180030131	1	4	85	0	1	0	0	0	0	0	0	0	6002	986	34	3		3	FLT4	5	180030131	3'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3308792	180030131	885129	389	88756											
FAM50B	26240	broad.mit.edu	37	chr6	3850660	3850660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcacggtgcgggtgcgcaaGggcaacacggtgcagcagtt	17	11	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3850660	T	T	3850660	3	4	85	1	0	0	0	0	1	0	0	0	5629	991	35	2	617	2	FAM50B	6	3850660	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08		3850660	167264407	390	88757											
F13A1	2162	broad.mit.edu	37	chr6	6146051	6146051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttggaagatccagctttcCactttgatcaggaagcaatg	11	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6146051	T	T	6146051	1	4	85	0	1	0	0	0	0	0	0	0	5383	609	21	4		4	F13A1	6	6146051	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2295391	6146051	164969016	391	88758											
CAGE1	285782	broad.mit.edu	37	chr6	7339120	7339120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctctggcttcccaccCttctgttctgagatgggggt	14	11	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7339120	A	A	7339120	1	1	85	0	1	0	0	0	0	0	0	0	2598	696	24	2		2	CAGE1	6	7339120	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1193069	7339120	163775947	392	88759											
HIST1H3B	8358	broad.mit.edu	37	chr6	26032349	26032349	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggaaaggaaagagctactCttcttttatagagtcagacc	10	7	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26032349	T	T	26032349	1	4	85	0	1	0	0	0	0	0	0	0	7223	928	32	4		4	HIST1H3B	6	26032349	5'Flank	SNP	C	TCGA-17-Z056-01A-01W-0747-08	18693229	26032349	145082718	393	88760											
HIST1H2BB	3018	broad.mit.edu	37	chr6	26043589	26043589	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccaggcagcagcaggcgCacagccgtctgaatctccct	10	17	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26043589	T	T	26043589	2	4	85	1	0	0	0	0	0	0	0	1	7208	697	25	4		4	HIST1H2BB	6	26043589	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	11240	26043589	145071478	394	88761											
HFE	3077	broad.mit.edu	37	chr6	26092885	26092885	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagggtaaacagatcccctCtcctcatccttcctctttcc	4	17	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26092885	T	T	26092885	1	4	85	0	1	0	0	0	0	0	0	0	7148	928	32	4		4	HFE	6	26092885	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	49296	26092885	145022182	395	88762											
HIST1H3J	8356	broad.mit.edu	37	chr6	27861117	27861117	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgatattaacgtcatctgAgtaacttccaatcagacaga	6	8	3	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27861117	C	C	27861117	1	2	85	0	1	0	0	0	0	0	0	0	7231	319	11	5		5	HIST1H3J	6	27861117	5'Flank	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1768232	27861117	143253950	396	88763											
OR2B6	26212	broad.mit.edu	37	chr6	27925169	27925169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattattctagtgtcacgcCtggacaccaaacttcatacc	5	14	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27925169	A	A	27925169	3	1	85	1	0	0	0	0	1	0	0	0	11085	680	24	2	153	2	OR2B6	6	27925169	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	64052	27925169	143189898	397	88764											
ZNF165	7718	broad.mit.edu	37	chr6	28056965	28056965	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agatcttactagacatcggcGaattcacactggggaaagac	10	9	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28056965	A	A	28056965	3	1	85	1	0	0	0	0	1	0	0	0	17866	1058	37	4	1185	4	ZNF165	6	28056965	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	131796	28056965	143058102	398	88765											
GPX6	257202	broad.mit.edu	37	chr6	28472273	28472273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggtcggagggcaggaGttctggagcagagatataga	17	5	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28472273	T	T	28472273	3	4	85	1	0	0	0	0	1	0	0	0	6810	1020	36	3	207	3	GPX6	6	28472273	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	415308	28472273	142642794	399	88766											
OR2J2	26707	broad.mit.edu	37	chr6	29141926	29141926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgggtacccctttgtggaCatcgcctagtggatcacttc	10	12	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29141926	T	T	29141926	3	4	85	1	0	0	0	0	1	0	0	0	11097	478	17	4	516	4	OR2J2	6	29141926	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	669653	29141926	141973141	400	88767											
ABCF1	23	broad.mit.edu	37	chr6	30545196	30545196	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactttctagacaaagtggtGaagaaagggaagaaggacaa	12	4	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30545196	A	A	30545196	2	1	85	1	0	0	0	0	0	0	0	1	65	1277	45	4		4	ABCF1	6	30545196	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1403270	30545196	140569871	401	88768											
PPP1R10	5514	broad.mit.edu	37	chr6	30573623	30573623	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagcctgggtgacagagTgagactctgtctccaaaaaa	10	11	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30573623	C	C	30573623	1	2	85	0	1	0	0	0	0	0	0	0	12453	1711	59	5		5	PPP1R10	6	30573623	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	28427	30573623	140541444	402	88769											
CFB	629	broad.mit.edu	37	chr6	31915899	31915899	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactcgggggaatggaatctCgctgatcttccaggactagc	12	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31915899	T	T	31915899	1	4	85	0	1	0	0	0	0	0	0	0	3308	899	31	4		4	CFB	6	31915899	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1342276	31915899	139199168	403	88770											
ATF6B	1388	broad.mit.edu	37	chr6	32089085	32089085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggcctcagagttgacGgaagaacatggagagacagg	17	6	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32089085	T	T	32089085	2	4	85	1	0	0	0	0	0	0	0	1	1089	1103	39	1		1	ATF6B	6	32089085	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	173186	32089085	139025982	404	88771											
PBX2	5089	broad.mit.edu	37	chr6	32155858	32155858	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcaccatgcgttccatctCtttgggggccacgggcctgg	13	14	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32155858	T	T	32155858	3	4	85	1	0	0	0	0	1	0	0	0	11587	922	32	4	697	4	PBX2	6	32155858	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	66773	32155858	138959209	405	88772											
TAPBP	6892	broad.mit.edu	37	chr6	33272846	33272846	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gataggtgccctcctgaaagGgttgaactgtaggcagccag	14	9	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33272846	C	C	33272846	3	2	85	1	0	0	0	0	1	0	0	0	15671	1232	43	4	758	4	TAPBP	6	33272846	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1116988	33272846	137842221	406	88773											
ITPR3	3710	broad.mit.edu	37	chr6	33626676	33626676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtagggtcttcggtgtgGggactggataagggcatgcc	17	7	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33626676	T	T	33626676	1	4	85	0	1	0	0	0	0	0	0	0	7992	1247	43	2		2	ITPR3	6	33626676	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	353830	33626676	137488391	407	88774											
ITPR3	3710	broad.mit.edu	37	chr6	33646156	33646156	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccagggcctcgcctccctCcttggtgggcccagcaccct	11	19	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33646156	A	A	33646156	1	1	85	0	1	0	0	0	0	0	0	0	7992	870	30	3		3	ITPR3	6	33646156	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	19480	33646156	137468911	408	88775											
C6orf222	389384	broad.mit.edu	37	chr6	36297905	36297905	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggagcgcaaggcagcaGctgccttggacaacccttcc	11	17	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36297905	A	A	36297905	3	1	85	1	0	0	0	0	1	0	0	0	2379	971	34	4	1439	4	C6orf222	6	36297905	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2651749	36297905	134817162	409	88776											
DNAH8	1769	broad.mit.edu	37	chr6	38854616	38854616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatggaaggaatgtacaGcttggacaagcctggagact	14	6	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38854616	T	T	38854616	3	4	85	1	0	0	0	0	1	0	0	0	4647	971	34	3	7868	3	DNAH8	6	38854616	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2556711	38854616	132260451	410	88777											
TSPO2	222642	broad.mit.edu	37	chr6	41011851	41011851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgtccagtgcaccagcCtcagcccacggagaagagtg	11	14	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41011851	A	A	41011851	3	1	85	1	0	0	0	0	1	0	0	0	16781	681	24	2	498	2	TSPO2	6	41011851	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2157235	41011851	130103216	411	88778											
UBR2	23304	broad.mit.edu	37	chr6	42633948	42633948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatgtggatgaattacaGctccctgaagggttcaggcc	12	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42633948	T	T	42633948	3	4	85	1	0	0	0	0	1	0	0	0	17028	962	34	3	4126	3	UBR2	6	42633948	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1622097	42633948	128481119	412	88779											
CUL9	23113	broad.mit.edu	37	chr6	43183858	43183858	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagtaggctggatagcaggGcaggaatactgacttctgtc	13	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43183858	C	C	43183858	1	2	85	0	1	0	0	0	0	0	0	0	4094	1218	42	4		4	CUL9	6	43183858	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	549910	43183858	127931209	413	88780											
TTBK1	84630	broad.mit.edu	37	chr6	43251485	43251485	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctgtctggggcccccCgggaaaccccctcagagatg	12	17	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43251485	A	A	43251485	2	1	85	1	0	0	0	0	0	0	0	1	16802	643	23	1		1	TTBK1	6	43251485	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	67627	43251485	127863582	414	88781											
TMEM63B	55362	broad.mit.edu	37	chr6	44121583	44121583	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttccaccatgcgcacgggtGagggatccctacccagggaa	12	13	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44121583	T	T	44121583	1	4	85	0	1	0	0	0	0	0	0	0	16314	1305	45	3		3	TMEM63B	6	44121583	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	870098	44121583	126993484	415	88782											
CAPN11	11131	broad.mit.edu	37	chr6	44148513	44148513	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataggggtgtatgagctccAgaggctgctcaacaggatgg	16	7	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44148513	G	G	44148513	3	3	85	1	0	0	0	0	1	0	0	0	2650	188	7	5	1841	5	CAPN11	6	44148513	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	26930	44148513	126966554	416	88783											
GPR115	221393	broad.mit.edu	37	chr6	47679962	47679962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtctccacccccctctgcaTcaaaaccactttttaggact	4	17	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47679962	A	A	47679962	1	1	85	0	1	0	0	0	0	0	0	0	6697	1450	50	5		5	GPR115	6	47679962	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3531449	47679962	123435105	417	88784											
PKHD1	5314	broad.mit.edu	37	chr6	51612545	51612545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaattttatgcatggatGtatgaaatggcactgcctag	9	5	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51612545	T	T	51612545	1	4	85	0	1	0	0	0	0	0	0	0	12066	1392	48	3		3	PKHD1	6	51612545	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3932583	51612545	119502522	418	88785											
PAQR8	85315	broad.mit.edu	37	chr6	52268418	52268418	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacctgctgcagtccaagtCagagctctcccactacacct	6	18	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52268418	T	T	52268418	3	4	85	1	0	0	0	0	1	0	0	0	11535	838	29	4	409	4	PAQR8	6	52268418	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	655873	52268418	118846649	419	88786											
GSTA2	2939	broad.mit.edu	37	chr6	52617777	52617777	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccaaatctgctataccttCtatatacatatcaatcctga	2	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52617777	T	T	52617777	3	4	85	1	0	0	0	0	1	0	0	0	6897	922	32	4	391	4	GSTA2	6	52617777	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	349359	52617777	118497290	420	88787											
BAI3	577	broad.mit.edu	37	chr6	69349117	69349117	+	Frame_Shift_Del	DEL	G	-	-													gctgcttaaaatcagaaaatGggagaacagaatcatgtggg							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69349117	-	-	69349117	7	5	85	1	0	1	0	1	0	0	0	0	1305	1348	47	0	552	0	BAI3	6	69349117	Frame_Shift_Del	DEL	G	TCGA-17-Z056-01A-01W-0747-08	16731340	69349117	101765950	421	88788											
COL19A1	1310	broad.mit.edu	37	chr6	70639393	70639393	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagggagatgtgttgaactAcatttttagaaatcgagaac	11	4	0	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70639393	T	T	70639393	3	4	85	1	0	0	0	0	1	0	0	0	3708	391	14	5	485	5	COL19A1	6	70639393	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1290276	70639393	100475674	422	88789											
SMAP1	60682	broad.mit.edu	37	chr6	71569856	71569856	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctaaagaaacaagaattAaaagtgaagtaagcctcttg	9	5	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71569856	G	G	71569856	1	3	85	0	1	0	0	0	0	0	0	0	14880	377	13	5		5	SMAP1	6	71569856	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	930463	71569856	99545211	423	88790											
OOEP	441161	broad.mit.edu	37	chr6	74083014	74083014	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcggagtcaagaacacaccAcgatggcggagaaaggaaga	14	8	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74083014	G	G	74083014	1	3	85	0	1	0	0	0	0	0	0	0	10964	174	6	5		5	OOEP	6	74083014	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	2513158	74083014	97032053	424	88791											
IMPG1	3617	broad.mit.edu	37	chr6	76720783	76720783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttggcagagctaaacaaCtggggaaaaaggaccttata	11	6	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76720783	A	A	76720783	1	1	85	0	1	0	0	0	0	0	0	0	7798	580	20	3		3	IMPG1	6	76720783	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2637769	76720783	94394284	425	88792											
ELOVL4	6785	broad.mit.edu	37	chr6	80629028	80629028	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatatagctggaggataaagTtaatttcataatagaaaatt	8	2	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80629028	A	A	80629028	1	1	85	0	1	0	0	0	0	0	0	0	5118	1740	60	5		5	ELOVL4	6	80629028	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3908245	80629028	90486039	426	88793											
SYNCRIP	10492	broad.mit.edu	37	chr6	86351163	86351164	+	5'UTR	INS	-	A	A													tgttctgtagccatgtttccINSagagatctgttcaaacgcaa							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86351164	A	A	86351163	6	5	85	0	1	1	1	0	0	0	0	0	15563	609	21	0		0	SYNCRIP	6	86351163	5'UTR	INS	-	TCGA-17-Z056-01A-01W-0747-08	5722135	86351163	84763904	427	88794											
MDN1	23195	broad.mit.edu	37	chr6	90397782	90397782	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaactaaaatgaggaagaGaggtattagctcacctgtgc	10	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90397782	A	A	90397782	1	1	85	0	1	0	0	0	0	0	0	0	9508	957	33	4		4	MDN1	6	90397782	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4046619	90397782	80717285	428	88795											
EPHA7	2045	broad.mit.edu	37	chr6	94068117	94068117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggaagacttgtagaacCcacggccacaggctgggaat	14	9	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94068117	A	A	94068117	3	1	85	1	0	0	0	0	1	0	0	0	5214	623	22	2	2207	2	EPHA7	6	94068117	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3670335	94068117	77046950	429	88796											
PRDM1	639	broad.mit.edu	37	chr6	106554849	106554849	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctgcgactccattctggaGagaaaccataccaatgcaag	8	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106554849	A	A	106554849	3	1	85	1	0	0	0	0	1	0	0	0	12556	943	33	4	2005	4	PRDM1	6	106554849	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	12486732	106554849	64560218	430	88797											
NR2E1	7101	broad.mit.edu	37	chr6	108501529	108501529	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatctattgtatgacagctGatgcttttggaagatgcttg	10	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108501529	A	A	108501529	2	1	85	1	0	0	0	0	0	0	0	1	10720	1277	45	4		4	NR2E1	6	108501529	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1946680	108501529	62613538	431	88798			2	70		4	4	732	G		2.406812e-06
NR2E1	7101	broad.mit.edu	37	chr6	108501542	108501542	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacagctgatgcttttggaaGatgcttggagagaactgttt	13	5	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108501542	A	A	108501542	3	1	85	1	0	0	0	0	1	0	0	0	10720	942	33	4	680	4	NR2E1	6	108501542	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	13	108501542	62613525	432	88799			2	70		4	4	732	G		2.406812e-06
NR2E1	7101	broad.mit.edu	37	chr6	108501729	108501729	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaattcctgctgaacaataGagtatacctgtcatttataa	5	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108501729	A	A	108501729	1	1	85	0	1	0	0	0	0	0	0	0	10720	957	33	4		4	NR2E1	6	108501729	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	187	108501729	62613338	433	88800			2	70		4	4	732	G		2.406812e-06
NR2E1	7101	broad.mit.edu	37	chr6	108502260	108502260	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacctttgcaaaaagaggtGatggttttcaagggagctga	13	5	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108502260	A	A	108502260	1	1	85	0	1	0	0	0	0	0	0	0	10720	1305	45	4		4	NR2E1	6	108502260	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	531	108502260	62612807	434	88801			2	70		4	4	732	G		2.406812e-06
MICAL1	64780	broad.mit.edu	37	chr6	109770690	109770690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacaggtctcgtacctaagGcagccccgctcaggtctcaa	9	14	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109770690	T	T	109770690	1	4	85	0	1	0	0	0	0	0	0	0	9662	1218	42	3		3	MICAL1	6	109770690	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1268430	109770690	61344377	435	88802											
FIG4	9896	broad.mit.edu	37	chr6	110062637	110062637	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgctaaacaaccttaacttGatttccaagagctgttgatc	6	9	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110062637	A	A	110062637	1	1	85	0	1	0	0	0	0	0	0	0	5945	1305	45	4		4	FIG4	6	110062637	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	291947	110062637	61052430	436	88803											
DSE	29940	broad.mit.edu	37	chr6	116757364	116757364	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatacacctgggagaggagaGtcccttggagacagcagcga	14	9	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116757364	C	C	116757364	3	2	85	1	0	0	0	0	1	0	0	0	4814	1029	36	4	1751	4	DSE	6	116757364	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	6694727	116757364	54357703	437	88804											
RNF217	154214	broad.mit.edu	37	chr6	125402714	125402714	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccatagagagaatacgaGtgtaaatgtaataatatgaa	11	3	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125402714	A	A	125402714	1	1	85	0	1	0	0	0	0	0	0	0	13592	1044	36	4		4	RNF217	6	125402714	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8645350	125402714	45712353	438	88805											
THEMIS	387357	broad.mit.edu	37	chr6	128040991	128040991	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgacacaggtcacaagTaaattatcagtccaaaataa	6	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128040991	C	C	128040991	1	2	85	0	1	0	0	0	0	0	0	0	15983	1653	57	5		5	THEMIS	6	128040991	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2638277	128040991	43074076	439	88806											
VNN1	8876	broad.mit.edu	37	chr6	133032957	133032957	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccataaatagcatcttctgGagtcacaataatatgcgcac	7	10	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133032957	A	A	133032957	3	1	85	1	0	0	0	0	1	0	0	0	17309	1174	41	4	1333	4	VNN1	6	133032957	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4991966	133032957	38082110	440	88807											
SYNE1	23345	broad.mit.edu	37	chr6	152552538	152552538	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcttaccttctcagttacTagaccttgcagaatttgcca	7	11	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152552538	A	A	152552538	2	1	85	1	0	0	0	0	0	0	0	1	15564	1509	53	5		5	SYNE1	6	152552538	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	19519581	152552538	18562529	441	88808											
ZDHHC14	79683	broad.mit.edu	37	chr6	158014181	158014181	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgtgataactgcgtaggtGagtagtgcctgggcggagcc	16	7	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158014181	A	A	158014181	1	1	85	0	1	0	0	0	0	0	0	0	17730	1305	45	4		4	ZDHHC14	6	158014181	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5461643	158014181	13100886	442	88809											
LPA	4018	broad.mit.edu	37	chr6	161055031	161055031	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacacaaccagaaaggagtCtatgagaattacgaacgtta	9	7	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161055031	T	T	161055031	1	4	85	0	1	0	0	0	0	0	0	0	8990	928	32	4		4	LPA	6	161055031	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3040850	161055031	10060036	443	88810											
MAP3K4	4216	broad.mit.edu	37	chr6	161470037	161470037	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctcaaagaaaaaagacaggGagcaaagaggacaagaaaat	10	5	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161470037	A	A	161470037	3	1	85	1	0	0	0	0	1	0	0	0	9344	1175	41	4	743	4	MAP3K4	6	161470037	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	415006	161470037	9645030	444	88811											
FOXK1	221937	broad.mit.edu	37	chr7	4794082	4794082	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacttacagtgtccttctctCtcctcagtgtccccaactcc	4	17	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4794082	G	G	4794082	1	3	85	0	1	0	0	0	0	0	0	0	6074	928	32	4		4	FOXK1	7	4794082	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08		4794082	154344581	445	88812											
COL28A1	340267	broad.mit.edu	37	chr7	7420368	7420368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtcaatataggttggaaCcagttagagtataaaatcac	8	5	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7420368	A	A	7420368	1	1	85	0	1	0	0	0	0	0	0	0	3718	522	18	3		3	COL28A1	7	7420368	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2626286	7420368	151718295	446	88813											
ISPD	729920	broad.mit.edu	37	chr7	16445652	16445652	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaccacactacagtgcttgTcccttctatctagactcaag	6	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16445652	C	C	16445652	1	2	85	0	1	0	0	0	0	0	0	0	7934	1682	58	5		5	ISPD	7	16445652	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	9025284	16445652	142693011	447	88814											
SOSTDC1	25928	broad.mit.edu	37	chr7	16504991	16504991	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattgtttcacaacatatatAcggttcaggttagttaccaa	6	7	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16504991	T	T	16504991	1	4	85	0	1	0	0	0	0	0	0	0	15053	406	14	5		5	SOSTDC1	7	16504991	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	59339	16504991	142633672	448	88815											
ABCB5	340273	broad.mit.edu	37	chr7	20767983	20767983	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attggaagctgttatgcattCagccatgcctttatatattt	7	7	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20767983	T	T	20767983	2	4	85	1	0	0	0	0	0	0	0	1	44	825	29	4		4	ABCB5	7	20767983	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4262992	20767983	138370680	449	88816											
DNAH11	8701	broad.mit.edu	37	chr7	21742342	21742342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaggatcattacgactgGggacttcgtgctattaagtc	10	7	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21742342	T	T	21742342	3	4	85	1	0	0	0	0	1	0	0	0	4639	1241	43	2	6363	2	DNAH11	7	21742342	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	974359	21742342	137396321	450	88817											
OSBPL3	26031	broad.mit.edu	37	chr7	24905592	24905592	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcctaccctgcttgtccccGaaaacttttccttcttcgga	6	15	1	0	rs142438268	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24905592	A	A	24905592	1	1	85	0	1	0	0	0	0	0	0	0	11373	1073	37	4		4	OSBPL3	7	24905592	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3163250	24905592	134233071	451	88818											
HOXA5	3202	broad.mit.edu	37	chr7	27182784	27182784	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggggcgtcctcctcggctCcggacgccgtgccaaccccc	12	20	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27182784	T	T	27182784	3	4	85	1	0	0	0	0	1	0	0	0	7362	855	30	4	377	4	HOXA5	7	27182784	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2277192	27182784	131955879	452	88819											
GGCT	79017	broad.mit.edu	37	chr7	30538475	30538475	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttgtcatcagataacttcGacaggttatttcttttcctt	5	8	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30538475	A	A	30538475	4	1	85	1	0	0	0	0	0	1	0	0	6419	1066	37	4	207	4	GGCT	7	30538475	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3355691	30538475	128600188	453	88820											
BBS9	27241	broad.mit.edu	37	chr7	33313482	33313482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattggaaatcataataaCatgctgcatatttatcaaga	6	5	2	2	rs140396972		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33313482	A	A	33313482	3	1	85	1	0	0	0	0	1	0	0	0	1347	477	17	3	960	3	BBS9	7	33313482	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2775007	33313482	125825181	454	88821											
TBX20	57057	broad.mit.edu	37	chr7	35280503	35280503	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactcaccagttgattctgGtaggcagtgactgccgtaaa	10	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35280503	T	T	35280503	4	4	85	1	0	0	0	0	0	1	0	0	15778	1256	44	3	559	3	TBX20	7	35280503	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1967021	35280503	123858160	455	88822											
TXNDC3	51314	broad.mit.edu	37	chr7	37907439	37907439	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgaacctaacgaacgatctGaggatcaacctgaggtcgaa	10	11	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37907439	C	C	37907439	3	2	85	1	0	0	0	0	1	0	0	0	16924	1291	45	4	791	4	TXNDC3	7	37907439	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2626936	37907439	121231224	456	88823											
AMPH	273	broad.mit.edu	37	chr7	38457456	38457456	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccactggctcctcagcccgaGtgtccattccaaggtccaga	9	16	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38457456	C	C	38457456	3	2	85	1	0	0	0	0	1	0	0	0	588	1029	36	4	740	4	AMPH	7	38457456	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	550017	38457456	120681207	457	88824											
AMPH	273	broad.mit.edu	37	chr7	38534158	38534158	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaaacaactcccgttacAcagaaatgagtgaggattct	9	8	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38534158	C	C	38534158	1	2	85	0	1	0	0	0	0	0	0	0	588	174	6	5		5	AMPH	7	38534158	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	76702	38534158	120604505	458	88825											
GLI3	2737	broad.mit.edu	37	chr7	42007333	42007333	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccgggtttctcctggcTtgcaaagcaagggctgtggt	14	11	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42007333	A	A	42007333	3	1	85	1	0	0	0	0	1	0	0	0	6503	1606	56	5	2458	5	GLI3	7	42007333	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3473175	42007333	117131330	459	88826											
PSMA2	5683	broad.mit.edu	37	chr7	42959098	42959098	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attaaaaaggccctatggtaCagtgaggataaacagattct	9	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42959098	G	G	42959098	1	3	85	0	1	0	0	0	0	0	0	0	12773	493	17	4		4	PSMA2	7	42959098	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	951765	42959098	116179565	460	88827											
HECW1	23072	broad.mit.edu	37	chr7	43351281	43351281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagcgcgtgtctcccagcAcatctttcgttttcgtgtga	9	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43351281	T	T	43351281	1	4	85	0	1	0	0	0	0	0	0	0	7109	174	6	5		5	HECW1	7	43351281	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	392183	43351281	115787382	461	88828											
ZMIZ2	83637	broad.mit.edu	37	chr7	44797419	44797419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctttgtgggtgggacctGgaccattcttcttttttctc	10	11	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44797419	T	T	44797419	1	4	85	0	1	0	0	0	0	0	0	0	17823	1363	47	2		2	ZMIZ2	7	44797419	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1446138	44797419	114341244	462	88829											
RAMP3	10268	broad.mit.edu	37	chr7	45223038	45223038	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtgagatggagtgggtcaCacctggcaagctggaagaaa	16	7	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45223038	T	T	45223038	1	4	85	0	1	0	0	0	0	0	0	0	13131	493	17	4		4	RAMP3	7	45223038	3'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	425619	45223038	113915625	463	88830											
PKD1L1	168507	broad.mit.edu	37	chr7	47870944	47870944	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagtccctccaaaccactgCtgggtgctgcggaagagtag	12	11	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47870944	T	T	47870944	3	4	85	1	0	0	0	0	1	0	0	0	12059	797	28	4	2269	4	PKD1L1	7	47870944	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2647906	47870944	111267719	464	88831											
SUN3	256979	broad.mit.edu	37	chr7	48046973	48046973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaagtgtaaagctcctGttatcagctgttgctgggct	12	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48046973	T	T	48046973	1	4	85	0	1	0	0	0	0	0	0	0	15511	1392	48	3		3	SUN3	7	48046973	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	176029	48046973	111091690	465	88832											
ABCA13	154664	broad.mit.edu	37	chr7	48452202	48452202	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactgagaaaactgaagcgtGctttaattatttatgccttt	7	6	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48452202	C	C	48452202	1	2	85	0	1	0	0	0	0	0	0	0	31	1334	46	4		4	ABCA13	7	48452202	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	405229	48452202	110686461	466	88833											
POM121L12	285877	broad.mit.edu	37	chr7	53104216	53104216	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtagggtctccttcgcCctcgaggtcacccagtctgc	11	15	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104216	A	A	53104216	2	1	85	1	0	0	0	0	0	0	0	1	12336	610	22	2		2	POM121L12	7	53104216	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4652014	53104216	106034447	467	88834											
ZNF479	90827	broad.mit.edu	37	chr7	57200054	57200054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgcagatacctgcaggaCacaaggacacataggcttgg	11	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57200054	A	A	57200054	1	1	85	0	1	0	0	0	0	0	0	0	18060	493	17	3		3	ZNF479	7	57200054	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4095838	57200054	101938609	468	88835											
ZNF716	441234	broad.mit.edu	37	chr7	57509950	57509950	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgtcctctgctcctggaGgccaagcctctgtggccttg	12	15	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57509950	T	T	57509950	1	4	85	1	0	0	0	0	0	0	0	0	18247	1015	35	2		2	ZNF716	7	57509950	Translation_Start_Site	SNP	G	TCGA-17-Z056-01A-01W-0747-08	309896	57509950	101628713	469	88836											
EIF4H	7458	broad.mit.edu	37	chr7	73605631	73605634	+	Intron	DEL	TTCT	-	-													tgaaacatgcagcagctgtcTtcttagagccaaccagcagc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73605634	-	-	73605631	6	5	85	0	1	1	0	1	0	0	0	0	5081	1624	56	0		0	EIF4H	7	73605631	Intron	DEL	TTCT	TCGA-17-Z056-01A-01W-0747-08	16095681	73605631	85533032	470	88837											
MDH2	4191	broad.mit.edu	37	chr7	75684173	75684173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaaagtagctgtgctagGggcctctggaggcatcgggc	16	9	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75684173	T	T	75684173	3	4	85	1	0	0	0	0	1	0	0	0	9503	1232	43	2	98	2	MDH2	7	75684173	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2078542	75684173	83454490	471	88838											
FGL2	10875	broad.mit.edu	37	chr7	76826126	76826126	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgccatgttctggtgaAgttggtgctcccatcgagac	12	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76826126	T	T	76826126	3	4	85	1	0	0	0	0	1	0	0	0	5930	72	3	5	533	5	FGL2	7	76826126	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1141953	76826126	82312537	472	88839											
MAGI2	9863	broad.mit.edu	37	chr7	77789536	77789536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagtcactgcgtggagagCtgtggtgggtggatacagag	18	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77789536	A	A	77789536	3	1	85	1	0	0	0	0	1	0	0	0	9283	797	28	3	1744	3	MAGI2	7	77789536	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	963410	77789536	81349127	473	88840											
PCLO	27445	broad.mit.edu	37	chr7	82595810	82595811	+	Intron	INS	-	A	A													gccattcttgaatctgtgggINSaaaaaaattacaatgaacag							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82595811	A	A	82595810	6	5	85	0	1	1	1	0	0	0	0	0	11677	1189	41	0		0	PCLO	7	82595810	Intron	INS	-	TCGA-17-Z056-01A-01W-0747-08	4806274	82595810	76542853	474	88841											
SEMA3A	10371	broad.mit.edu	37	chr7	83606484	83606484	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgagtcagtgggtctcCatttcttatatcttgtcgtc	9	9	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83606484	A	A	83606484	4	1	85	1	0	0	0	0	0	1	0	0	14137	603	21	2	646	2	SEMA3A	7	83606484	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1010674	83606484	75532179	475	88842											
ABCB4	5244	broad.mit.edu	37	chr7	87060734	87060734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacctgcatgttgacaaGtttgaagtacaccccttcct	7	11	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87060734	T	T	87060734	3	4	85	1	0	0	0	0	1	0	0	0	43	1029	36	3	2037	3	ABCB4	7	87060734	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3454250	87060734	72077929	476	88843											
ABCB1	5243	broad.mit.edu	37	chr7	87133606	87133606	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgaccattgaaaaatagaTgcctttctgtgccagcagct	8	10	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87133606	G	G	87133606	3	3	85	1	0	0	0	0	1	0	0	0	40	1464	51	5	50	5	ABCB1	7	87133606	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	72872	87133606	72005057	477	88844											
CYP51A1	1595	broad.mit.edu	37	chr7	91763538	91763538	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcggccagacggatcaggtaGaccaggctgagggtgaaggc	18	9	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91763538	A	A	91763538	2	1	85	1	0	0	0	0	0	0	0	1	4228	929	33	4		4	CYP51A1	7	91763538	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4629932	91763538	67375125	478	88845											
SAMD9	54809	broad.mit.edu	37	chr7	92731848	92731848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatattgtaagtatcatacCgcctttttgacttcggatac	6	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92731848	A	A	92731848	3	1	85	1	0	0	0	0	1	0	0	0	13937	652	23	1	1210	1	SAMD9	7	92731848	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	968310	92731848	66406815	479	88846											
HEPACAM2	253012	broad.mit.edu	37	chr7	92848786	92848786	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgcaaaggaaaggaaagTtgtgaagaccttgagccaca	12	6	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92848786	C	C	92848786	1	2	85	0	1	0	0	0	0	0	0	0	7120	1725	60	5		5	HEPACAM2	7	92848786	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	116938	92848786	66289877	480	88847											
CCDC132	55610	broad.mit.edu	37	chr7	92940400	92940400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaataattagttaataaagGctagggacctatctgactaa	7	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92940400	T	T	92940400	1	4	85	0	1	0	0	0	0	0	0	0	2793	1218	42	3		3	CCDC132	7	92940400	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	91614	92940400	66198263	481	88848											
CALCR	799	broad.mit.edu	37	chr7	93091394	93091394	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatgccttcctatatttccAattcaaaggaaaaatagttg	5	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93091394	T	T	93091394	3	4	85	1	0	0	0	0	1	0	0	0	2605	130	5	5	954	5	CALCR	7	93091394	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	150994	93091394	66047269	482	88849											
SHFM1	7979	broad.mit.edu	37	chr7	96318259	96318259	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtctccatcttataacCatgtttctctagttcagctc	5	11	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96318259	T	T	96318259	3	4	85	1	0	0	0	0	1	0	0	0	14391	594	21	4	26	4	SHFM1	7	96318259	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3226865	96318259	62820404	483	88850											
ASNS	440	broad.mit.edu	37	chr7	97487739	97487739	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacatgcaaaagaggaagtgGaagtgtcctagttatgtgcc	12	6	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97487739	T	T	97487739	1	4	85	0	1	0	0	0	0	0	0	0	1052	1189	41	3		3	ASNS	7	97487739	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1169480	97487739	61650924	484	88851											
SPDYE3	441272	broad.mit.edu	37	chr7	99913632	99913632	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagacacagtcttgctctgTtgcccaggctggagggcagt	14	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99913632	C	C	99913632	1	2	85	0	1	0	0	0	0	0	0	0	15148	1740	60	5		5	SPDYE3	7	99913632	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2425893	99913632	59225031	485	88852											
ZCWPW1	55063	broad.mit.edu	37	chr7	100006280	100006280	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacagcgattatactgcaCatctgctgaaagagagaagg	10	8	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100006280	T	T	100006280	3	4	85	1	0	0	0	0	1	0	0	0	17723	478	17	4	1111	4	ZCWPW1	7	100006280	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	92648	100006280	59132383	486	88853											
ZCWPW1	55063	broad.mit.edu	37	chr7	100016858	100016858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccacttatctttccataGttttcccctctgaacagtca	3	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100016858	T	T	100016858	1	4	85	0	1	0	0	0	0	0	0	0	17723	1044	36	3		3	ZCWPW1	7	100016858	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	10578	100016858	59121805	487	88854											
MYL10	93408	broad.mit.edu	37	chr7	101259549	101259549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtcgaacactttgaaggCgtggagaatggtctcctctg	13	8	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101259549	A	A	101259549	3	1	85	1	0	0	0	0	1	0	0	0	10138	768	27	3	208	3	MYL10	7	101259549	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1242691	101259549	57879114	488	88855											
MLL5	55904	broad.mit.edu	37	chr7	104681519	104681519	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaaaaaaaaaaaacccttCtggagctagaaagtaggaag	8	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104681519	A	A	104681519	1	1	85	0	1	0	0	0	0	0	0	0	9717	928	32	3		3	MLL5	7	104681519	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3421970	104681519	54457144	489	88856											
NRCAM	4897	broad.mit.edu	37	chr7	107872764	107872764	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttggttgacaagtttccActtactggatgggcggacaa	12	7	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107872764	G	G	107872764	1	3	85	0	1	0	0	0	0	0	0	0	10739	174	6	5		5	NRCAM	7	107872764	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	3191245	107872764	51265899	490	88857											
ST7	7982	broad.mit.edu	37	chr7	116759737	116759737	+	Missense_Mutation	SNP	T	G	G													tccaacaattctaattccagTaacggggactcagattccaa							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116759737	G	G	116759737	3	3	85	1	0	0	0	0	1	0	0	0	15347	1635	57	5	367	5	ST7	7	116759737	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	8886973	116759737	42378926	491	88858	398	2									
ST7	7982	broad.mit.edu	37	chr7	116759740	116759740	+	Missense_Mutation	SNP	C	G	G													aacaattctaattccagtaaCggggactcagattccaatag							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116759740	G	G	116759740	3	3	85	1	0	0	0	0	1	0	0	0	15347	535	19	4	370	4	ST7	7	116759740	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3	116759740	42378923	492	88859	398	2									
CTTNBP2	83992	broad.mit.edu	37	chr7	117422844	117422844	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttacacattcagccggaaCtaaaatacgtgtgcaaatta	7	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117422844	G	G	117422844	1	3	85	0	1	0	0	0	0	0	0	0	4079	580	20	4		4	CTTNBP2	7	117422844	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	663104	117422844	41715819	493	88860											
PTPRZ1	5803	broad.mit.edu	37	chr7	121652008	121652008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcggccctagccatataCcaatacctaagtcttcgtta	6	12	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121652008	A	A	121652008	3	1	85	1	0	0	0	0	1	0	0	0	12922	507	18	3	2954	3	PTPRZ1	7	121652008	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4229164	121652008	37486655	494	88861											
PTPRZ1	5803	broad.mit.edu	37	chr7	121681036	121681036	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgtcgtccactgcaggtGagtctcagagatgtgcctct	12	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121681036	C	C	121681036	1	2	85	0	1	0	0	0	0	0	0	0	12922	1305	45	4		4	PTPRZ1	7	121681036	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	29028	121681036	37457627	495	88862											
CADPS2	93664	broad.mit.edu	37	chr7	122303495	122303495	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaacactgtctctttgctCaagccatctatttctggcaa	5	13	5	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122303495	G	G	122303495	3	3	85	1	0	0	0	0	1	0	0	0	2597	825	29	4	3464	4	CADPS2	7	122303495	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	622459	122303495	36835168	496	88863											
SLC13A1	6561	broad.mit.edu	37	chr7	122768942	122768942	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaacaaatccggggtctcGactaaaccatagcagagcca	10	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122768942	T	T	122768942	2	4	85	1	0	0	0	0	0	0	0	1	14504	1066	37	3		3	SLC13A1	7	122768942	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	465447	122768942	36369721	497	88864											
GRM8	2918	broad.mit.edu	37	chr7	126173734	126173734	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggggataagctggcagcCtgtgcggttcatgttgggtc	17	7	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126173734	G	G	126173734	3	3	85	1	0	0	0	0	1	0	0	0	6869	681	24	4	1086	4	GRM8	7	126173734	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3404792	126173734	32964929	498	88865											
TMEM209	84928	broad.mit.edu	37	chr7	129813780	129813780	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaatacatgcatgatgatCtgaggatgaagaaataattt	8	4	1	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129813780	T	T	129813780	5	4	85	1	0	0	0	0	0	0	1	0	16257	927	32	4	357	4	TMEM209	7	129813780	Splice_Site	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3640046	129813780	29324883	499	88866											
TMEM209	84928	broad.mit.edu	37	chr7	129842280	129842280	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagatagctgatgtcccttCcagctttgagtctacgaaat	8	9	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129842280	T	T	129842280	1	4	85	0	1	0	0	0	0	0	0	0	16257	870	30	4		4	TMEM209	7	129842280	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	28500	129842280	29296383	500	88867											
CPA1	1357	broad.mit.edu	37	chr7	130023290	130023290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacacgggcatccattcccGggagtgggtcacccaggcca	13	15	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130023290	T	T	130023290	3	4	85	1	0	0	0	0	1	0	0	0	3821	1116	39	1	560	1	CPA1	7	130023290	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	181010	130023290	29115373	501	88868											
PLXNA4	91584	broad.mit.edu	37	chr7	132174109	132174109	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagtggttcttgtagacaTatgcgatgacagacgtcatg	13	6	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132174109	A	A	132174109	3	1	85	1	0	0	0	0	1	0	0	0	12217	1406	49	5	4805	5	PLXNA4	7	132174109	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2150819	132174109	26964554	502	88869											
EXOC4	60412	broad.mit.edu	37	chr7	132937745	132937745	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgattggattttccacTtccgcgcctctggaattctc	8	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132937745	A	A	132937745	1	1	85	0	1	0	0	0	0	0	0	0	5348	1624	56	5		5	EXOC4	7	132937745	5'Flank	SNP	T	TCGA-17-Z056-01A-01W-0747-08	763636	132937745	26200918	503	88870											
CREB3L2	64764	broad.mit.edu	37	chr7	137567414	137567414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggtgttagcaaaagacCacaggggtccaacacattcc	9	10	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137567414	A	A	137567414	1	1	85	0	1	0	0	0	0	0	0	0	3889	609	21	2		2	CREB3L2	7	137567414	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4629669	137567414	21571249	504	88871											
AGK	55750	broad.mit.edu	37	chr7	141336877	141336877	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgtttctctgtaatgcAtatatttggtattttttttt	6	3	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141336877	T	T	141336877	1	4	85	0	1	0	0	0	0	0	0	0	383	232	8	5		5	AGK	7	141336877	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	3769463	141336877	17801786	505	88872											
MGAM	8972	broad.mit.edu	37	chr7	141740554	141740554	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatggaggaagcaaaaagtCgagatggaacttcctggaga	14	5	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141740554	A	A	141740554	2	1	85	1	0	0	0	0	0	0	0	1	9634	871	31	3		3	MGAM	7	141740554	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	403677	141740554	17398109	506	88873											
EPHB6	2051	broad.mit.edu	37	chr7	142562270	142562270	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccctgccgtgctccgaTcctttgcttcctttccagag	8	17	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142562270	A	A	142562270	3	1	85	1	0	0	0	0	1	0	0	0	5220	1435	50	5	722	5	EPHB6	7	142562270	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	821716	142562270	16576393	507	88874											
TRPV5	56302	broad.mit.edu	37	chr7	142627277	142627277	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgtctcccccagggctccTggattggagtaagacagaga	13	12	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142627277	A	A	142627277	5	1	85	1	0	0	0	0	0	0	1	0	16724	1594	55	5	2016	5	TRPV5	7	142627277	Splice_Site	SNP	T	TCGA-17-Z056-01A-01W-0747-08	65007	142627277	16511386	508	88875											
FAM131B	9715	broad.mit.edu	37	chr7	143054475	143054475	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatccatggaagaccaggCcatgagtgtggcctcagaga	12	11	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143054475	T	T	143054475	3	4	85	1	0	0	0	0	1	0	0	0	5486	739	26	4	582	4	FAM131B	7	143054475	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	427198	143054475	16084188	509	88876											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259108	147259108	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttagagacaaagaacgctCtttccaggaagaactactcc	7	10	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147259108	A	A	147259108	1	1	85	0	1	0	0	0	0	0	0	0	3679	928	32	3		3	CNTNAP2	7	147259108	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4204633	147259108	11879555	510	88877											
CUL1	8454	broad.mit.edu	37	chr7	148484122	148484122	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagacaaagacgtatttcaGaagttctatgcgaagatgct	10	6	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148484122	C	C	148484122	3	2	85	1	0	0	0	0	1	0	0	0	4087	933	33	4	1435	4	CUL1	7	148484122	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1225014	148484122	10654541	511	88878											
GIMAP8	155038	broad.mit.edu	37	chr7	150174822	150174822	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaaaatgtccaggaaatgtCccaagccgaaaaactcctta	6	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150174822	T	T	150174822	3	4	85	1	0	0	0	0	1	0	0	0	6449	855	30	4	1966	4	GIMAP8	7	150174822	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1690700	150174822	8963841	512	88879											
GIMAP4	55303	broad.mit.edu	37	chr7	150270130	150270130	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcctttattttgttacgTctgttcgcggaagattaaac	8	8	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150270130	G	G	150270130	2	3	85	1	0	0	0	0	0	0	0	1	6445	1654	58	5		5	GIMAP4	7	150270130	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	95308	150270130	8868533	513	88880											
MLL3	58508	broad.mit.edu	37	chr7	151850040	151850040	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccacaacactgctaatgttCtaaaaccaaatgcaaatgct	5	11	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151850040	G	G	151850040	5	3	85	1	0	0	0	0	0	0	1	0	9715	927	32	4	2503	4	MLL3	7	151850040	Splice_Site	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1579910	151850040	7288623	514	88881											
DPP6	1804	broad.mit.edu	37	chr7	154561257	154561257	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggctccatctaccccacCgtgaagccctaccactatcc	5	20	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154561257	A	A	154561257	2	1	85	1	0	0	0	0	0	0	0	1	4770	639	23	1		1	DPP6	7	154561257	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2711217	154561257	4577406	515	88882											
CSMD1	64478	broad.mit.edu	37	chr8	3267071	3267071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatggaggaaactgctgcCcgtccgcttcccataggcgg	12	14	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3267071	A	A	3267071	3	1	85	1	0	0	0	0	1	0	0	0	3978	623	22	2		2	CSMD1	8	3267071	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08		3267071	143096951	516	88883											
MCPH1	79648	broad.mit.edu	37	chr8	6301850	6301850	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttgttttattggtcaactGaaagttgaatatagaataat	8	2	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6301850	A	A	6301850	1	1	85	0	1	0	0	0	0	0	0	0	9491	1305	45	4		4	MCPH1	8	6301850	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3034779	6301850	140062172	517	88884											
BLK	640	broad.mit.edu	37	chr8	11418838	11418838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggatggcatacattgagCgcatgaattccatccaccgc	10	11	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11418838	A	A	11418838	3	1	85	1	0	0	0	0	1	0	0	0	1450	768	27	3	1095	3	BLK	8	11418838	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5116988	11418838	134945184	518	88885											
MSR1	4481	broad.mit.edu	37	chr8	16012544	16012544	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatcatctatcttcacagtAtatgattaaatagctaaaat	3	6	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16012544	G	G	16012544	1	3	85	0	1	0	0	0	0	0	0	0	9980	464	16	5		5	MSR1	8	16012544	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4593706	16012544	130351478	519	88886											
PHYHIP	9796	broad.mit.edu	37	chr8	22084444	22084444	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcactgccgtctgcacgGccacactgtactccgtgcgg	11	16	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22084444	A	A	22084444	3	1	85	1	0	0	0	0	1	0	0	0	11961	1203	42	4	744	4	PHYHIP	8	22084444	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	6071900	22084444	124279578	520	88887											
C8orf41	80185	broad.mit.edu	37	chr8	33369530	33369530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtatcaccgaaagtctcCctttctcatcttcattttct	3	13	6	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33369530	A	A	33369530	3	1	85	1	0	0	0	0	1	0	0	0	2453	623	22	2	952	2	C8orf41	8	33369530	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	11285086	33369530	112994492	521	88888											
KCNU1	157855	broad.mit.edu	37	chr8	36768447	36768448	+	Splice_Site	DNP	GG	TT	TT													tctctcttttcctctcattaGggatgtgcactttattctgg							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36768448	TT	TT	36768447	5	4	85	1	0	0	0	0	0	0	1	0	8163	1014	35	2	2417	2	KCNU1	8	36768447	Splice_Site	DNP	GG	TCGA-17-Z056-01A-01W-0747-08	3398917	36768447	109595575	522	88889											
PRKDC	5591	broad.mit.edu	37	chr8	48739408	48739408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcagcagggctgcgtgCtgacagctaatgtcctgtga	14	10	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48739408	A	A	48739408	3	1	85	1	0	0	0	0	1	0	0	0	12627	796	28	3	3890	3	PRKDC	8	48739408	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	11970961	48739408	97624614	523	88890											
SNTG1	54212	broad.mit.edu	37	chr8	51569535	51569535	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacagagtgtactccccgAccttcctggccctgaggggc	13	14	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51569535	T	T	51569535	3	4	85	1	0	0	0	0	1	0	0	0	14988	275	10	5	962	5	SNTG1	8	51569535	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	2830127	51569535	94794487	524	88891											
C8orf34	116328	broad.mit.edu	37	chr8	69437834	69437834	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgccagctgaggttgtcAgtacaatgaaaccgaactgg	12	8	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69437834	T	T	69437834	1	4	85	0	1	0	0	0	0	0	0	0	2448	203	7	5		5	C8orf34	8	69437834	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	17868299	69437834	76926188	525	88892											
ZFHX4	79776	broad.mit.edu	37	chr8	77618301	77618301	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaatatcagcagaccctgGaggcccatatgaaggagaaa	10	9	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77618301	T	T	77618301	4	4	85	1	0	0	0	0	0	1	0	0	17761	1175	41	3	1980	3	ZFHX4	8	77618301	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8180467	77618301	68745721	526	88893											
STMN2	11075	broad.mit.edu	37	chr8	80567105	80567105	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctatgtttttcttccccaGtctcaggaggcccaggtgct	11	12	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80567105	T	T	80567105	5	4	85	1	0	0	0	0	0	0	1	0	15427	1043	36	3	302	3	STMN2	8	80567105	Splice_Site	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2948804	80567105	65796917	527	88894											
FABP12	646486	broad.mit.edu	37	chr8	82441609	82441609	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgctagaattgcttacttAccgaggatgatatctgacta	8	7	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82441609	T	T	82441609	1	4	85	0	1	0	0	0	0	0	0	0	5402	406	14	5		5	FABP12	8	82441609	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1874504	82441609	63922413	528	88895											
RUNX1T1	862	broad.mit.edu	37	chr8	92983087	92983087	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggcctcctctgtgtgccaGtcaggccaaaccagacaaga	10	14	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92983087	C	C	92983087	1	2	85	0	1	0	0	0	0	0	0	0	13858	1044	36	4		4	RUNX1T1	8	92983087	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	10541478	92983087	53380935	529	88896											
PGCP	10404	broad.mit.edu	37	chr8	98155200	98155200	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggtgtgtattcagcaGtgtctgtcaaaatactccac	11	8	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98155200	T	T	98155200	1	4	85	0	1	0	0	0	0	0	0	0	11881	1044	36	3		3	PGCP	8	98155200	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5172113	98155200	48208822	530	88897											
PABPC1	26986	broad.mit.edu	37	chr8	101721354	101721354	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accttaattaaaagaaaaaaGacttacgatgaggtctggca	8	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101721354	C	C	101721354	1	2	85	0	1	0	0	0	0	0	0	0	11457	957	33	4		4	PABPC1	8	101721354	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3566154	101721354	44642668	531	88898											
RIMS2	9699	broad.mit.edu	37	chr8	104897965	104897965	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcaaatgctgatctggaaGattccaggatttctatgcta	10	7	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104897965	T	T	104897965	3	4	85	1	0	0	0	0	1	0	0	0	13479	942	33	3	1278	3	RIMS2	8	104897965	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3176611	104897965	41466057	532	88899											
RIMS2	9699	broad.mit.edu	37	chr8	104922335	104922335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcaccatctcctttaCtgcactcttttgtctgactc	3	13	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104922335	A	A	104922335	1	1	85	0	1	0	0	0	0	0	0	0	13479	580	20	3		3	RIMS2	8	104922335	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	24370	104922335	41441687	533	88900											
DPYS	1807	broad.mit.edu	37	chr8	105436376	105436376	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcacagctaaagaagtcatCtaaggagaagcggctgatta	11	7	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105436376	A	A	105436376	1	1	85	0	1	0	0	0	0	0	0	0	4786	928	32	3		3	DPYS	8	105436376	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	514041	105436376	40927646	534	88901											
TTC35	9694	broad.mit.edu	37	chr8	109489188	109489188	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatccatttaactatccCcttcaatcactcctctcctg	1	15	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109489188	T	T	109489188	1	4	85	0	1	0	0	0	0	0	0	0	16829	638	22	4		4	TTC35	8	109489188	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4052812	109489188	36874834	535	88902											
CSMD3	114788	broad.mit.edu	37	chr8	113564965	113564965	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagctgataaaaaataatAgaaatttaagccacaattta	4	5	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113564965	T	T	113564965	1	4	85	0	1	0	0	0	0	0	0	0	3980	435	15	5		5	CSMD3	8	113564965	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4075777	113564965	32799057	536	88903											
CSMD3	114788	broad.mit.edu	37	chr8	113599413	113599413	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcatagttgagtggataaTttggagacagcaaaattcct	9	5	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113599413	A	A	113599413	3	1	85	1	0	0	0	0	1	0	0	0	3980	1493	52	5	7552	5	CSMD3	8	113599413	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	34448	113599413	32764609	537	88904											
HAS2	3037	broad.mit.edu	37	chr8	122629425	122629425	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagatgaggctgggtcaaGcatagtgtctgaatcacaaa	11	8	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122629425	C	C	122629425	3	2	85	1	0	0	0	0	1	0	0	0	7028	971	34	4	1017	4	HAS2	8	122629425	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	9030012	122629425	23734597	538	88905											
ASAP1	50807	broad.mit.edu	37	chr8	131130695	131130695	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaccttttaaactgattttCcacattactttttatccaat	1	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131130695	A	A	131130695	1	1	85	0	1	0	0	0	0	0	0	0	1014	870	30	3		3	ASAP1	8	131130695	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	8501270	131130695	15233327	539	88906											
ADCY8	114	broad.mit.edu	37	chr8	131812695	131812695	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcgaagtcagcaatgatctCattgagcaagcgcaggcatt	10	9	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131812695	G	G	131812695	3	3	85	1	0	0	0	0	1	0	0	0	300	835	29	4	734	4	ADCY8	8	131812695	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	682000	131812695	14551327	540	88907											
COL22A1	169044	broad.mit.edu	37	chr8	139737681	139737681	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccagggggtcctggaggGccctgtagagaaagagcatt	15	9	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139737681	A	A	139737681	2	1	85	1	0	0	0	0	0	0	0	1	3713	1190	42	4		4	COL22A1	8	139737681	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7924986	139737681	6626341	541	88908											
RCL1	10171	broad.mit.edu	37	chr9	4844500	4844500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacttggttaaacctactcAgtgtttgtgcctttgtatct	7	9	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4844500	T	T	4844500	1	4	85	0	1	0	0	0	0	0	0	0	13286	203	7	5		5	RCL1	9	4844500	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08		4844500	136368931	542	88909											
GLDC	2731	broad.mit.edu	37	chr9	6553455	6553455	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaggacaggcatcctcattCcgctttagtgaaatgacggg	11	10	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6553455	A	A	6553455	2	1	85	1	0	0	0	0	0	0	0	1	6497	842	30	3		3	GLDC	9	6553455	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1708955	6553455	134659976	543	88910											
PTPRD	5789	broad.mit.edu	37	chr9	8483988	8483988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactcggatagcaaaactGggagtctgagcagaagaatc	12	7	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8483988	T	T	8483988	1	4	85	0	1	0	0	0	0	0	0	0	12907	1363	47	2		2	PTPRD	9	8483988	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1930533	8483988	132729443	544	88911											
PTPRD	5789	broad.mit.edu	37	chr9	8485214	8485214	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtgatttcttacaaattaGaaaacaacttactttgaaag	5	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8485214	C	C	8485214	1	2	85	0	1	0	0	0	0	0	0	0	12907	957	33	4		4	PTPRD	9	8485214	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1226	8485214	132728217	545	88912											
CNTLN	54875	broad.mit.edu	37	chr9	17388325	17388325	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaggattatattttaaaaCgagggcttgtaaatgtaaac	8	3	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17388325	G	G	17388325	1	3	85	0	1	0	0	0	0	0	0	0	3671	551	19	4		4	CNTLN	9	17388325	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	8903111	17388325	123825106	546	88913											
RGP1	9827	broad.mit.edu	37	chr9	35750242	35750242	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttccttttcccacagtgAggccctggcctgggccagtg	11	14	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35750242	T	T	35750242	3	4	85	1	0	0	0	0	1	0	0	0	13392	304	11	5	253	5	RGP1	9	35750242	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	18361917	35750242	105463189	547	88914											
EXOSC3	51010	broad.mit.edu	37	chr9	37780832	37780832	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatactatctccagtggataGagttttcccacttcctgtat	6	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37780832	C	C	37780832	2	2	85	1	0	0	0	0	0	0	0	1	5358	929	33	4		4	EXOSC3	9	37780832	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2030590	37780832	103432599	548	88915											
RORB	6096	broad.mit.edu	37	chr9	77245374	77245374	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgtttttaaggaaggctgGctaaaggatccttctgcctg	11	9	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77245374	A	A	77245374	1	1	85	0	1	0	0	0	0	0	0	0	13640	1218	42	4		4	RORB	9	77245374	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	39464542	77245374	63968057	549	88916											
FLJ46321	389763	broad.mit.edu	37	chr9	84607525	84607525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtctctgtcattgctaCgtcctcagagcaaaatttca	7	10	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84607525	A	A	84607525	3	1	85	1	0	0	0	0	1	0	0	0	5990	536	19	3	2154	3	FLJ46321	9	84607525	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7362151	84607525	56605906	550	88917											
PTPDC1	138639	broad.mit.edu	37	chr9	96827072	96827072	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaccatattctaccttggtGaataacagcgagtgtgttgc	9	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96827072	A	A	96827072	2	1	85	1	0	0	0	0	0	0	0	1	12879	1277	45	4		4	PTPDC1	9	96827072	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	12219547	96827072	44386359	551	88918											
PTPDC1	138639	broad.mit.edu	37	chr9	96827099	96827099	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcgagtgtgttgcaaacatGaaaggtaatgtctctttaat	10	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96827099	A	A	96827099	3	1	85	1	0	0	0	0	1	0	0	0	12879	1290	45	4	80	4	PTPDC1	9	96827099	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	27	96827099	44386332	552	88919											
PTCH1	5727	broad.mit.edu	37	chr9	98268677	98268677	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggcgcgggcgccgcggcGggcgctcttaccttccaccc	17	17	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98268677	C	C	98268677	1	2	85	0	1	0	0	0	0	0	0	0	12836	1131	39	4		4	PTCH1	9	98268677	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1441578	98268677	42944754	553	88920											
COL15A1	1306	broad.mit.edu	37	chr9	101749483	101749483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattcccacgcttttacctGttcgtctccattgccaaaac	4	15	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101749483	T	T	101749483	1	4	85	0	1	0	0	0	0	0	0	0	3704	1392	48	3		3	COL15A1	9	101749483	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3480806	101749483	39463948	554	88921											
OR13C8	138802	broad.mit.edu	37	chr9	107331796	107331796	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggagtgcatgatcttaggCacgatggcactggaccgcta	13	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107331796	A	A	107331796	2	1	85	1	0	0	0	0	0	0	0	1	11032	697	25	3		3	OR13C8	9	107331796	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5582313	107331796	33881635	555	88922											
IKBKAP	8518	broad.mit.edu	37	chr9	111655217	111655217	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcctcactcctttcctacTaaagcaaaaagcaaaaccag	4	13	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111655217	A	A	111655217	1	1	85	0	1	0	0	0	0	0	0	0	7680	1537	53	5		5	IKBKAP	9	111655217	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	4323421	111655217	29558214	556	88923											
AKNA	80709	broad.mit.edu	37	chr9	117121705	117121705	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatcatgtcccacactaCccaaaatcatttcaagggct	5	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117121705	G	G	117121705	1	3	85	0	1	0	0	0	0	0	0	0	463	522	18	4		4	AKNA	9	117121705	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5466488	117121705	24091726	557	88924											
DEC1	50514	broad.mit.edu	37	chr9	118163613	118163613	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatacttcatttaataataGtgttttaagggacattatca	5	4	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118163613	C	C	118163613	1	2	85	0	1	0	0	0	0	0	0	0	4414	1044	36	4		4	DEC1	9	118163613	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1041908	118163613	23049818	558	88925											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123313052	123313052	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggacacaagggacagtaatGagaaatgggccactcacagt	12	8	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123313052	C	C	123313052	1	2	85	0	1	0	0	0	0	0	0	0	3176	1305	45	4		4	CDK5RAP2	9	123313052	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5149439	123313052	17900379	559	88926											
TTC16	158248	broad.mit.edu	37	chr9	130482646	130482646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgatgtctacatcttccGggccagactctacaactttc	7	15	3	1	rs137884355		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130482646	T	T	130482646	3	4	85	1	0	0	0	0	1	0	0	0	16809	1116	39	1	651	1	TTC16	9	130482646	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7169594	130482646	10730785	560	88927											
LAMC3	10319	broad.mit.edu	37	chr9	133928193	133928193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccaggcatggtaccccCccaccctatgtcgggatctc	8	18	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133928193	A	A	133928193	1	1	85	0	1	0	0	0	0	0	0	0	8688	638	22	2		2	LAMC3	9	133928193	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3445547	133928193	7285238	561	88928											
OBP2B	29989	broad.mit.edu	37	chr9	136081907	136081907	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagcaccaggacagggGgagaggcctgagagtggatc	18	10	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136081907	A	A	136081907	1	1	85	0	1	0	0	0	0	0	0	0	10906	1247	43	4		4	OBP2B	9	136081907	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2153714	136081907	5131524	562	88929											
EHMT1	79813	broad.mit.edu	37	chr9	140535856	140535856	+	Intron	SNP	C	T	T													tctgtaacctgatttaatatCttcaaattctgtcacttcag							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140535856	T	T	140535856	1	4	85	0	1	0	0	0	0	0	0	0	5023	928	32	4		4	EHMT1	9	140535856	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4453949	140535856	677575	563	88930	399	2									
EHMT1	79813	broad.mit.edu	37	chr9	140535859	140535859	+	Intron	SNP	C	T	T													gtaacctgatttaatatcttCaaattctgtcacttcagcac							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140535859	T	T	140535859	1	4	85	0	1	0	0	0	0	0	0	0	5023	841	29	4		4	EHMT1	9	140535859	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3	140535859	677572	564	88931	399	2									
CACNA1B	774	broad.mit.edu	37	chr9	140881374	140881374	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccctgggtgctgggaaggcgGactctcctgtcattccctcc	12	15	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140881374	C	C	140881374	1	2	85	0	1	0	0	0	0	0	0	0	2565	1189	41	4		4	CACNA1B	9	140881374	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	345515	140881374	332057	565	88932											
AKR1E2	83592	broad.mit.edu	37	chr10	4889419	4889419	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccgactggccatgttccCcatgtaaatatggctccttc	7	14	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4889419	T	T	4889419	3	4	85	1	0	0	0	0	1	0	0	0	474	623	22	4	951	4	AKR1E2	10	4889419	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08		4889419	130645328	566	88933											
ITIH5	80760	broad.mit.edu	37	chr10	7697622	7697622	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaacagtctgacttgcctcGggaccctgagtccatcctag	10	14	1	2	rs139355305		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7697622	A	A	7697622	3	1	85	1	0	0	0	0	1	0	0	0	7977	1116	39	4	2910	4	ITIH5	10	7697622	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2808203	7697622	127837125	567	88934											
SLC39A12	221074	broad.mit.edu	37	chr10	18254557	18254557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaggaaacttgccttcccCagactactttacagaatata	5	11	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18254557	T	T	18254557	3	4	85	1	0	0	0	0	1	0	0	0	14729	594	21	4	699	4	SLC39A12	10	18254557	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	10556935	18254557	117280190	568	88935											
BMI1	648	broad.mit.edu	37	chr10	22606898	22606899	+	Missense_Mutation	DNP	GC	TT	TT													tacatactagaggcaggaaaGcaccgagctgacaagtcaac							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22606899	TT	TT	22606898	3	4	85	1	0	0	0	0	1	0	0	0	1461	962	34	3		3	BMI1	10	22606898	Missense_Mutation	DNP	GC	TCGA-17-Z056-01A-01W-0747-08	4352341	22606898	112927849	569	88936											
ARMC3	219681	broad.mit.edu	37	chr10	23319719	23319719	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaggaacagattgaggatcTggcaaagtaagttgtctatg	12	4	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23319719	A	A	23319719	3	1	85	1	0	0	0	0	1	0	0	0	956	1580	55	5	2302	5	ARMC3	10	23319719	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	712821	23319719	112215028	570	88937											
MYO3A	53904	broad.mit.edu	37	chr10	26432511	26432511	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtagatttcccaaggcCactgaccagactcttgtagg	10	10	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26432511	T	T	26432511	2	4	85	1	0	0	0	0	0	0	0	1	10170	581	21	4		4	MYO3A	10	26432511	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3112792	26432511	109102236	571	88938											
GAD2	2572	broad.mit.edu	37	chr10	26581764	26581764	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgaatacatcgatttgAaatgttcttggaattttcaa	7	6	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26581764	T	T	26581764	1	4	85	0	1	0	0	0	0	0	0	0	6240	261	9	5		5	GAD2	10	26581764	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	149253	26581764	108952983	572	88939											
ARHGAP12	94134	broad.mit.edu	37	chr10	32097632	32097632	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggtttggctttggcaactGtctgattaggtccttaacag	11	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32097632	C	C	32097632	3	2	85	1	0	0	0	0	1	0	0	0	867	1386	48	4	237	4	ARHGAP12	10	32097632	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5515868	32097632	103437115	573	88940											
FRMPD2	143162	broad.mit.edu	37	chr10	49430245	49430245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttactccaatctagctgGtagatgctaacaatactcaa	6	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49430245	T	T	49430245	1	4	85	0	1	0	0	0	0	0	0	0	6118	1276	44	3		3	FRMPD2	10	49430245	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	17332613	49430245	86104502	574	88941											
PCDH15	65217	broad.mit.edu	37	chr10	55582806	55582806	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgggcccctcagagacttActcttggcttgtattttggg	11	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55582806	G	G	55582806	2	3	85	1	0	0	0	0	0	0	0	1	11605	388	14	5		5	PCDH15	10	55582806	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	6152561	55582806	79951941	575	88942											
BICC1	80114	broad.mit.edu	37	chr10	60549720	60549720	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactgaaataagtgttacaAtttttttaaacctctttgga	5	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60549720	C	C	60549720	1	2	85	0	1	0	0	0	0	0	0	0	1433	116	4	5		5	BICC1	10	60549720	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4966914	60549720	74985027	576	88943											
FAM13C	220965	broad.mit.edu	37	chr10	61014147	61014147	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgttgacaagatttgcttGataattctgtatcggtcata	10	5	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61014147	C	C	61014147	3	2	85	1	0	0	0	0	1	0	0	0	5500	1280	45	4	480	4	FAM13C	10	61014147	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	464427	61014147	74520600	577	88944											
ARID5B	84159	broad.mit.edu	37	chr10	63852413	63852413	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacggtgggcattccggggGcggatcagaaggccacaagc	17	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63852413	C	C	63852413	3	2	85	1	0	0	0	0	1	0	0	0	924	1203	42	4	3229	4	ARID5B	10	63852413	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2838266	63852413	71682334	578	88945											
JMJD1C	221037	broad.mit.edu	37	chr10	64953137	64953137	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcattgtaggaaaatttcCaacttgtaaattctgtttgt	6	5	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64953137	T	T	64953137	3	4	85	1	0	0	0	0	1	0	0	0	8020	603	21	4	1840	4	JMJD1C	10	64953137	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1100724	64953137	70581610	579	88946											
DDIT4	54541	broad.mit.edu	37	chr10	74034654	74034654	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaactactgcgcctggcctAcagcgagccgtgcggcctgc	13	15	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74034654	G	G	74034654	3	3	85	1	0	0	0	0	1	0	0	0	4364	391	14	5	413	5	DDIT4	10	74034654	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	9081517	74034654	61500093	580	88947											
LRIT2	340745	broad.mit.edu	37	chr10	85981770	85981770	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagctggatgttctctaaagGagccatccttggactgcggg	13	10	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85981770	A	A	85981770	3	1	85	1	0	0	0	0	1	0	0	0	9035	1174	41	4	97	4	LRIT2	10	85981770	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	11947116	85981770	49552977	581	88948											
SLC16A12	387700	broad.mit.edu	37	chr10	91195875	91195875	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagtataccacaccaagCgctgatgacaaagaggtggt	12	8	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91195875	T	T	91195875	2	4	85	1	0	0	0	0	0	0	0	1	14518	755	27	4		4	SLC16A12	10	91195875	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5214105	91195875	44338872	582	88949											
TNKS2	80351	broad.mit.edu	37	chr10	93596694	93596694	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagggtatctcattaggtaAttcagaggcagacagacaat	11	6	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93596694	T	T	93596694	3	4	85	1	0	0	0	0	1	0	0	0	16444	101	4	5	1516	5	TNKS2	10	93596694	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	2400819	93596694	41938053	583	88950											
MYOF	26509	broad.mit.edu	37	chr10	95069778	95069778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaggaagggctcctaccGgcaaagagtagaggagcacg	15	10	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95069778	T	T	95069778	3	4	85	1	0	0	0	0	1	0	0	0	10183	1130	39	1	47	1	MYOF	10	95069778	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1473084	95069778	40464969	584	88951											
TCTN3	26123	broad.mit.edu	37	chr10	97440280	97440280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctgatacatgagcttgCgggttggacaggagacctac	12	10	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97440280	A	A	97440280	2	1	85	1	0	0	0	0	0	0	0	1	15846	755	27	3		3	TCTN3	10	97440280	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2370502	97440280	38094467	585	88952											
DNTT	1791	broad.mit.edu	37	chr10	98097824	98097824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaattttataagtaacaCtttcactgtgtccacaccat	5	10	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98097824	A	A	98097824	1	1	85	0	1	0	0	0	0	0	0	0	4720	580	20	3		3	DNTT	10	98097824	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	657544	98097824	37436923	586	88953											
C10orf12	26148	broad.mit.edu	37	chr10	98708798	98708798	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccgaccccaatattccccTagtggcccgtgagatcatgc	8	16	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98708798	C	C	98708798	1	2	85	0	1	0	0	0	0	0	0	0	1600	1537	53	5		5	C10orf12	10	98708798	5'UTR	SNP	T	TCGA-17-Z056-01A-01W-0747-08	610974	98708798	36825949	587	88954											
PI4K2A	55361	broad.mit.edu	37	chr10	99344388	99344388	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaacattgatcattaataGggggttagaaagagttcaaa	10	3	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99344388	C	C	99344388	1	2	85	0	1	0	0	0	0	0	0	0	11966	1015	35	4		4	PI4K2A	10	99344388	5'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	635590	99344388	36190359	588	88955											
GOLGA7B	401647	broad.mit.edu	37	chr10	99619326	99619326	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccagaccaaattccccccaGagctggacagccgggtaagg	11	14	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99619326	C	C	99619326	3	2	85	1	0	0	0	0	1	0	0	0	6626	943	33	4	130	4	GOLGA7B	10	99619326	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	274938	99619326	35915421	589	88956											
ABCC2	1244	broad.mit.edu	37	chr10	101604270	101604270	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaggccttgtgatcaaacAacaattggacagagtggaga	14	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101604270	T	T	101604270	1	4	85	0	1	0	0	0	0	0	0	0	53	145	5	5		5	ABCC2	10	101604270	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1984944	101604270	33930477	590	88957											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105371294	105371294	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgggtggctatagcgcattCacagaaaaggaaggaaaggg	15	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105371294	T	T	105371294	1	4	85	0	1	0	0	0	0	0	0	0	14369	841	29	4		4	SH3PXD2A	10	105371294	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3767024	105371294	30163453	591	88958			3	71		4	3	196	N	C	2.121539e-05
SH3PXD2A	9644	broad.mit.edu	37	chr10	105371326	105371326	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaaaggggagaagaaattCagtacacataccaggctgga	13	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105371326	T	T	105371326	1	4	85	0	1	0	0	0	0	0	0	0	14369	841	29	4		4	SH3PXD2A	10	105371326	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	32	105371326	30163421	592	88959			3	71		4	3	196	N	C	2.121539e-05
SH3PXD2A	9644	broad.mit.edu	37	chr10	105371479	105371479	+	Intron	SNP	C	T	T													aggtgaaactaactcctgatCcttcaagttcatgctttagc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105371479	T	T	105371479	1	4	85	0	1	0	0	0	0	0	0	0	14369	870	30	4		4	SH3PXD2A	10	105371479	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	153	105371479	30163268	593	88960	400	2	3	71		4	3	196	N	C	2.121539e-05
SH3PXD2A	9644	broad.mit.edu	37	chr10	105371489	105371489	+	Intron	SNP	C	T	T													aactcctgatccttcaagttCatgctttagctcagccttta							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105371489	T	T	105371489	1	4	85	0	1	0	0	0	0	0	0	0	14369	841	29	4		4	SH3PXD2A	10	105371489	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	10	105371489	30163258	594	88961	400	2	3	71		4	3	196	N	C	2.121539e-05
SORCS3	22986	broad.mit.edu	37	chr10	106974254	106974254	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctaagggagaagtacacCgccaaggcccagatgtgccc	14	12	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106974254	T	T	106974254	2	4	85	1	0	0	0	0	0	0	0	1	15046	639	23	4		4	SORCS3	10	106974254	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1602765	106974254	28560493	595	88962											
SORCS1	114815	broad.mit.edu	37	chr10	108923814	108923814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgctggtcagtctcagCtcctccatccggaagcgggt	14	12	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108923814	G	G	108923814	3	3	85	1	0	0	0	0	1	0	0	0	15044	796	28	4	3373	4	SORCS1	10	108923814	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1949560	108923814	26610933	596	88963											
XPNPEP1	7511	broad.mit.edu	37	chr10	111651441	111651441	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaggatccctgcccagatCaggccaactaagtttgggct	10	12	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111651441	A	A	111651441	1	1	85	0	1	0	0	0	0	0	0	0	17569	841	29	3		3	XPNPEP1	10	111651441	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2727627	111651441	23883306	597	88964											
DMBT1	1755	broad.mit.edu	37	chr10	124377659	124377659	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggacaccaatgatgccaAcgtggtctgcaggcagctgg	14	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124377659	T	T	124377659	3	4	85	1	0	0	0	0	1	0	0	0	4617	43	2	5	4781	5	DMBT1	10	124377659	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	12726218	124377659	11157088	598	88965											
CPXM2	119587	broad.mit.edu	37	chr10	125521609	125521609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtacgccaccaccagctcgCcgccctgcaggttgccgccc	11	20	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521609	A	A	125521609	3	1	85	1	0	0	0	0	1	0	0	0	3870	739	26	3	730	3	CPXM2	10	125521609	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1143950	125521609	10013138	599	88966											
FAM196A	642938	broad.mit.edu	37	chr10	128974376	128974376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttggtgacgttggggatgGacctgcgtgcgggcactgtc	17	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128974376	T	T	128974376	3	4	85	1	0	0	0	0	1	0	0	0	5575	1174	41	3	1167	3	FAM196A	10	128974376	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3452767	128974376	6560371	600	88967											
MUC6	4588	broad.mit.edu	37	chr11	1019491	1019491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggccgtggttggtctagGtggttctgcagaggacagcc	17	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1019491	T	T	1019491	3	4	85	1	0	0	0	0	1	0	0	0	10074	1261	44	3	3521	3	MUC6	11	1019491	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08		1019491	133987025	601	88968											
NUP98	4928	broad.mit.edu	37	chr11	3800040	3800040	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacagaaaaacggagaaaaGacaacacattcaataagcaa	6	8	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3800040	C	C	3800040	1	2	85	0	1	0	0	0	0	0	0	0	10868	957	33	4		4	NUP98	11	3800040	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2780549	3800040	131206476	602	88969											
OR52B4	143496	broad.mit.edu	37	chr11	4388801	4388801	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagacatgggagccaaatGtgttgagagctttgtggcaa	14	6	0	2	rs139777859	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4388801	A	A	4388801	3	1	85	1	0	0	0	0	1	0	0	0	11206	1377	48	4	223	4	OR52B4	11	4388801	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	588761	4388801	130617715	603	88970											
OR52B4	143496	broad.mit.edu	37	chr11	4389218	4389218	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtggaatggatgaagaagAgctgagtgatgcaacgatcc	15	5	0	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4389218	T	T	4389218	3	4	85	1	0	0	0	0	1	0	0	0	11206	304	11	5	640	5	OR52B4	11	4389218	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	417	4389218	130617298	604	88971											
TRIM5	85363	broad.mit.edu	37	chr11	5699520	5699520	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggtctgctgcaccatctCagtttcagagttcgtaaggc	11	11	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5699520	G	G	5699520	3	3	85	1	0	0	0	0	1	0	0	0	16650	835	29	4	1082	4	TRIM5	11	5699520	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1310302	5699520	129306996	605	88972											
STK33	65975	broad.mit.edu	37	chr11	8474273	8474273	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagcccaggaggtcaaggcTgcagtgagccaagatcatgc	14	10	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8474273	C	C	8474273	1	2	85	0	1	0	0	0	0	0	0	0	15418	1595	55	5		5	STK33	11	8474273	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2774753	8474273	126532243	606	88973											
RPL27A	6157	broad.mit.edu	37	chr11	8706410	8706410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctaaaaacaagactgggGctgctcccatcattgatgtg	10	10	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8706410	T	T	8706410	3	4	85	1	0	0	0	0	1	0	0	0	13687	1203	42	3	303	3	RPL27A	11	8706410	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	232137	8706410	126300106	607	88974											
SOX6	55553	broad.mit.edu	37	chr11	16043916	16043916	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttccttccttccttccttCcttcctccctccctcccttc	0	24	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16043916	T	T	16043916	1	4	85	0	1	0	0	0	0	0	0	0	15069	870	30	4		4	SOX6	11	16043916	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7337506	16043916	118962600	608	88975											
MRGPRX4	117196	broad.mit.edu	37	chr11	18195254	18195254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctctggggcctgtccCtgctgtttagtatgctggag	13	11	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18195254	A	A	18195254	3	1	85	1	0	0	0	0	1	0	0	0	9863	680	24	2	453	2	MRGPRX4	11	18195254	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2151338	18195254	116811262	609	88976											
NELL1	4745	broad.mit.edu	37	chr11	21555896	21555896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaattaatatcctggtgGgcttgtgtttttctctgagg	11	5	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21555896	T	T	21555896	1	4	85	0	1	0	0	0	0	0	0	0	10428	1247	43	2		2	NELL1	11	21555896	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3360642	21555896	113450620	610	88977											
ANO5	203859	broad.mit.edu	37	chr11	22272495	22272495	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgttattgttatttttacAgttctcccatttgtttgata	5	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22272495	T	T	22272495	5	4	85	1	0	0	0	0	0	0	1	0	700	202	7	5	1164	5	ANO5	11	22272495	Splice_Site	SNP	A	TCGA-17-Z056-01A-01W-0747-08	716599	22272495	112734021	611	88978											
ANO3	63982	broad.mit.edu	37	chr11	26664852	26664852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtcactcaatggcggaGgcctttgccagcccgagcaa	11	12	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26664852	T	T	26664852	3	4	85	1	0	0	0	0	1	0	0	0	698	1000	35	2	2489	2	ANO3	11	26664852	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4392357	26664852	108341664	612	88979											
KIF18A	81930	broad.mit.edu	37	chr11	28113014	28113014	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtatcttcccggacagcaAgtggccctgaatttactaag	11	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28113014	T	T	28113014	3	4	85	1	0	0	0	0	1	0	0	0	8350	72	3	5	2222	5	KIF18A	11	28113014	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1448162	28113014	106893502	613	88980											
MPPED2	744	broad.mit.edu	37	chr11	30435712	30435712	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactactccacttattcctaGttgtagactgagatagtgga	8	8	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30435712	A	A	30435712	1	1	85	0	1	0	0	0	0	0	0	0	9836	1044	36	4		4	MPPED2	11	30435712	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2322698	30435712	104570804	614	88981											
MPPED2	744	broad.mit.edu	37	chr11	30517088	30517088	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaataagaaaaaagagCaccaattagcacgttcattt	6	8	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30517088	G	G	30517088	1	3	85	0	1	0	0	0	0	0	0	0	9836	725	25	4		4	MPPED2	11	30517088	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	81376	30517088	104489428	615	88982											
CD44	960	broad.mit.edu	37	chr11	35208288	35208288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatttggaataagttataGtaaaactccattctaactga	6	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35208288	T	T	35208288	1	4	85	0	1	0	0	0	0	0	0	0	3047	1044	36	3		3	CD44	11	35208288	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4691200	35208288	99798228	616	88983											
LRRC4C	57689	broad.mit.edu	37	chr11	40137891	40137891	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaattcaaacagtctgcaaAatacaagcaaaaaaaaccaa	5	8	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40137891	C	C	40137891	1	2	85	0	1	0	0	0	0	0	0	0	9095	29	1	5		5	LRRC4C	11	40137891	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4929603	40137891	94868625	617	88984											
MADD	8567	broad.mit.edu	37	chr11	47304430	47304430	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcagctgcagcctatccActatcgcgtctatgacagca	7	14	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47304430	G	G	47304430	3	3	85	1	0	0	0	0	1	0	0	0	9240	159	6	5	1806	5	MADD	11	47304430	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	7166539	47304430	87702086	618	88985											
CELF1	10658	broad.mit.edu	37	chr11	47498392	47498392	+	Intron	SNP	C	A	A													gatgacagccaggtgctgccCcttacctgccaaagagccaa							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47498392	A	A	47498392	1	1	85	0	1	0	0	0	0	0	0	0	3245	638	22	2		2	CELF1	11	47498392	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	193962	47498392	87508124	619	88986	401	2									
CELF1	10658	broad.mit.edu	37	chr11	47498401	47498401	+	Missense_Mutation	SNP	C	A	A													caggtgctgccccttacctgCcaaagagccaacattgaggc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47498401	A	A	47498401	3	1	85	1	0	0	0	0	1	0	0	0	3245	739	26	3	476	3	CELF1	11	47498401	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	9	47498401	87508115	620	88987	401	2									
TRIM48	79097	broad.mit.edu	37	chr11	55032389	55032389	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcagaaacatgaattctGgaatctcgcaagtcttccag	7	11	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55032389	A	A	55032389	3	1	85	1	0	0	0	0	1	0	0	0	16648	1349	47	4	64	4	TRIM48	11	55032389	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7533988	55032389	79974127	621	88988											
OR4C6	219432	broad.mit.edu	37	chr11	55433325	55433325	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccctgaagtcttacagctCtaaagggcggcacaaagccc	9	14	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55433325	A	A	55433325	3	1	85	1	0	0	0	0	1	0	0	0	11146	913	32	3	685	3	OR4C6	11	55433325	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	400936	55433325	79573191	622	88989											
OR5D14	219436	broad.mit.edu	37	chr11	55563767	55563767	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttctccacctgggcctccCacctgacttctatcaccatc	4	20	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563767	T	T	55563767	3	4	85	1	0	0	0	0	1	0	0	0	11249	594	21	4	738	4	OR5D14	11	55563767	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	130442	55563767	79442749	623	88990											
OR5L2	26338	broad.mit.edu	37	chr11	55595398	55595398	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acactctgcagagagcaggcAcaaagctttctccacctgtg	9	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55595398	T	T	55595398	3	4	85	1	0	0	0	0	1	0	0	0	11265	159	6	5	706	5	OR5L2	11	55595398	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	31631	55595398	79411118	624	88991											
OR8I2	120586	broad.mit.edu	37	chr11	55861056	55861056	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaatccaatcggagatcCatctcctttgttggctgctt	7	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55861056	A	A	55861056	2	1	85	1	0	0	0	0	0	0	0	1	11334	581	21	2		2	OR8I2	11	55861056	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	265658	55861056	79145460	625	88992											
OR8H2	390151	broad.mit.edu	37	chr11	55872529	55872529	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaggtgaacatgatgggtaGaaggaataacacaaatgtgg	14	4	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55872529	T	T	55872529	3	4	85	1	0	0	0	0	1	0	0	0	11332	942	33	3	13	3	OR8H2	11	55872529	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	11473	55872529	79133987	626	88993											
OR8J1	219477	broad.mit.edu	37	chr11	56125184	56125184	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtggaggcgactagtgatGaatacaatgtggaaagcatt	13	4	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56125184	C	C	56125184	1	2	85	0	1	0	0	0	0	0	0	0	11335	1305	45	4		4	OR8J1	11	56125184	5'Flank	SNP	G	TCGA-17-Z056-01A-01W-0747-08	252655	56125184	78881332	627	88994											
OR5AP2	338675	broad.mit.edu	37	chr11	56409618	56409618	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggcagcacatccatgaaAagaaatggccttattctcag	9	10	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56409618	T	T	56409618	3	4	85	1	0	0	0	0	1	0	0	0	11238	14	1	5	656	5	OR5AP2	11	56409618	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	284434	56409618	78596898	628	88995											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57067925	57067925	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggtgggagctaagggacaGaaggggcatgaggcctccga	20	7	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57067925	A	A	57067925	1	1	85	0	1	0	0	0	0	0	0	0	16443	957	33	4		4	TNKS1BP1	11	57067925	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	658307	57067925	77938591	629	88996											
GLYAT	10249	broad.mit.edu	37	chr11	58478151	58478151	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtttcagctgccatatAgagaatgcgttgtgtttgtt	12	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58478151	G	G	58478151	3	3	85	1	0	0	0	0	1	0	0	0	6543	420	15	5	502	5	GLYAT	11	58478151	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1410226	58478151	76528365	630	88997											
MS4A3	932	broad.mit.edu	37	chr11	59837653	59837653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgatcctgttcttggaCattaatgttgttttattttc	6	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59837653	A	A	59837653	1	1	85	0	1	0	0	0	0	0	0	0	9955	493	17	3		3	MS4A3	11	59837653	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1359502	59837653	75168863	631	88998											
MS4A5	64232	broad.mit.edu	37	chr11	60201482	60201482	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accattcagatcatgttgtgGacacatgtattttcttttac	6	8	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60201482	C	C	60201482	1	2	85	0	1	0	0	0	0	0	0	0	9957	1189	41	4		4	MS4A5	11	60201482	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	363829	60201482	74805034	632	88999											
CCDC86	79080	broad.mit.edu	37	chr11	60617836	60617836	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttccatggccaacaaccAtgtcagacacagcacctcag	7	16	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60617836	G	G	60617836	1	3	85	0	1	0	0	0	0	0	0	0	2889	232	8	5		5	CCDC86	11	60617836	3'UTR	SNP	A	TCGA-17-Z056-01A-01W-0747-08	416354	60617836	74388680	633	89000											
PGA5	5222	broad.mit.edu	37	chr11	61018519	61018519	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacgtgccttacagctggaCcagggctccctggatgttta	12	12	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61018519	G	G	61018519	1	3	85	0	1	0	0	0	0	0	0	0	11867	522	18	4		4	PGA5	11	61018519	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	400683	61018519	73987997	634	89001											
DAGLA	747	broad.mit.edu	37	chr11	61502411	61502411	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatgccattgccatccgGcgccacttcctggacgagaa	10	13	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61502411	A	A	61502411	2	1	85	1	0	0	0	0	0	0	0	1	4259	1190	42	4		4	DAGLA	11	61502411	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	483892	61502411	73504105	635	89002											
AHNAK	79026	broad.mit.edu	37	chr11	62284652	62284652	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagcccaggctggcctttGaacttttcaggtcacctttg	11	11	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62284652	A	A	62284652	3	1	85	1	0	0	0	0	1	0	0	0	414	1294	45	4	555	4	AHNAK	11	62284652	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	782241	62284652	72721864	636	89003											
SLC22A10	387775	broad.mit.edu	37	chr11	63057976	63057976	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcacaagtgaggcagacacAgaaccctgtgtggatggctg	14	9	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63057976	T	T	63057976	2	4	85	1	0	0	0	0	0	0	0	1	14554	175	7	5		5	SLC22A10	11	63057976	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	773324	63057976	71948540	637	89004											
MARK2	2011	broad.mit.edu	37	chr11	63668364	63668364	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggacaggtgaggctgtgcCgggctgtgaggttaagcttg	19	7	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63668364	G	G	63668364	1	3	85	0	1	0	0	0	0	0	0	0	9405	667	23	4		4	MARK2	11	63668364	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	610388	63668364	71338152	638	89005											
C2CD3	26005	broad.mit.edu	37	chr11	73850838	73850838	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtggatggtagctgtcGtaagtttctgacagaggttc	15	5	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73850838	A	A	73850838	2	1	85	1	0	0	0	0	0	0	0	1	2176	1140	40	4		4	C2CD3	11	73850838	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	10182474	73850838	61155678	639	89006											
C11orf30	56946	broad.mit.edu	37	chr11	76255238	76255238	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtaagtctttttcagttaaGaggaaaatgtagcaatgtag	10	4	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76255238	C	C	76255238	1	2	85	0	1	0	0	0	0	0	0	0	1648	957	33	4		4	C11orf30	11	76255238	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2404400	76255238	58751278	640	89007											
GRM5	2915	broad.mit.edu	37	chr11	88301013	88301013	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtagcagagttccctgcttGaggacttgactactggtgta	12	8	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88301013	C	C	88301013	4	2	85	1	0	0	0	0	0	1	0	0	6866	1294	45	4	1812	4	GRM5	11	88301013	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	12045775	88301013	46705503	641	89008											
FAT3	120114	broad.mit.edu	37	chr11	92523332	92523332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcactggcgtgctctataCtgccgagaggctggaccatg	13	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92523332	A	A	92523332	3	1	85	1	0	0	0	0	1	0	0	0	5748	565	20	3	4585	3	FAT3	11	92523332	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4222319	92523332	42483184	642	89009											
HEPHL1	341208	broad.mit.edu	37	chr11	93819046	93819046	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccctggtactgtttattctCtgaaaacaaggatcttttgt	7	8	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93819046	G	G	93819046	1	3	85	0	1	0	0	0	0	0	0	0	7122	928	32	4		4	HEPHL1	11	93819046	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1295714	93819046	41187470	643	89010											
KIAA1377	57562	broad.mit.edu	37	chr11	101833557	101833557	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggcattaattataaatcaGagctttaagtttggaaatca	7	4	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101833557	T	T	101833557	3	4	85	1	0	0	0	0	1	0	0	0	8297	933	33	3	1813	3	KIAA1377	11	101833557	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8014511	101833557	33172959	644	89011											
GUCY1A2	2977	broad.mit.edu	37	chr11	106647225	106647225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttccatcatcttcaaggcCatcagagcaatgggtttagc	9	10	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106647225	A	A	106647225	3	1	85	1	0	0	0	0	1	0	0	0	6958	594	21	2	434	2	GUCY1A2	11	106647225	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4813668	106647225	28359291	645	89012											
MLL	4297	broad.mit.edu	37	chr11	118376154	118376154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccaccaaacatcagcaatCctccttcaggcctgcttatt	4	16	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118376154	A	A	118376154	3	1	85	1	0	0	0	0	1	0	0	0	9713	855	30	3	9644	3	MLL	11	118376154	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	11728929	118376154	16630362	646	89013											
HYOU1	10525	broad.mit.edu	37	chr11	118922107	118922107	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agattatccagcagccacgcCtccccctccctggagctccc	7	20	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118922107	G	G	118922107	1	3	85	0	1	0	0	0	0	0	0	0	7540	696	24	4		4	HYOU1	11	118922107	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	545953	118922107	16084409	647	89014											
ARHGEF12	23365	broad.mit.edu	37	chr11	120317638	120317638	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttaggctacctcaggaaActtctctattcccttcaggc	6	13	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120317638	G	G	120317638	1	3	85	0	1	0	0	0	0	0	0	0	899	58	2	5		5	ARHGEF12	11	120317638	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1395531	120317638	14688878	648	89015											
SORL1	6653	broad.mit.edu	37	chr11	121429256	121429256	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtatttgagctcccatttCtctagtattgatgaggtatg	9	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121429256	T	T	121429256	1	4	85	0	1	0	0	0	0	0	0	0	15048	928	32	4		4	SORL1	11	121429256	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1111618	121429256	13577260	649	89016											
SORL1	6653	broad.mit.edu	37	chr11	121429285	121429285	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgatgaggtatgtgttctgtCcccattttcgctagggtgat	12	7	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121429285	T	T	121429285	1	4	85	0	1	0	0	0	0	0	0	0	15048	870	30	4		4	SORL1	11	121429285	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	29	121429285	13577231	650	89017											
BSX	390259	broad.mit.edu	37	chr11	122850098	122850098	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccgtgcgggctttgcgGcggcggcagtgcttccccgg	16	13	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122850098	T	T	122850098	2	4	85	1	0	0	0	0	0	0	0	1	1544	1190	42	3		3	BSX	11	122850098	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1420813	122850098	12156418	651	89018											
OR10G8	219869	broad.mit.edu	37	chr11	123900935	123900935	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtcatttttgtgactgtTggaatagtggcctcgggctg	13	7	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123900935	G	G	123900935	2	3	85	1	0	0	0	0	0	0	0	1	10997	1799	63	5		5	OR10G8	11	123900935	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1050837	123900935	11105581	652	89019											
OR8G2	26492	broad.mit.edu	37	chr11	124095447	124095447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaaaggaaaatgtcagcagGaaaccattcctcagtgactg	9	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124095447	T	T	124095447	3	4	85	1	0	0	0	0	1	0	0	0	11329	1174	41	3	52	3	OR8G2	11	124095447	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	194512	124095447	10911069	653	89020											
PATE1	160065	broad.mit.edu	37	chr11	125616206	125616206	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctctttccaaaatggacAagtccctcttgctggaactc	6	14	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125616206	T	T	125616206	4	4	85	1	0	0	0	0	0	1	0	0	11567	131	5	5	9	5	PATE1	11	125616206	Nonsense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1520759	125616206	9390310	654	89021											
SNX19	399979	broad.mit.edu	37	chr11	130785061	130785061	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgagtacaaggtggatccaGtcaggatctgacagcctgct	12	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130785061	A	A	130785061	2	1	85	1	0	0	0	0	0	0	0	1	15004	1020	36	4		4	SNX19	11	130785061	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5168855	130785061	4221455	655	89022											
NCAPD3	23310	broad.mit.edu	37	chr11	134072754	134072754	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtctatgttgatctcCcctgagggttcggaacggtt	12	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134072754	A	A	134072754	2	1	85	1	0	0	0	0	0	0	0	1	10301	610	22	2		2	NCAPD3	11	134072754	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3287693	134072754	933762	656	89023											
WNK1	65125	broad.mit.edu	37	chr12	991215	991215	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcgacatgaaaaaacttcAcgcccaaaattaagaatttt	4	9	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	991215	T	T	991215	2	4	85	1	0	0	0	0	0	0	0	1	17504	146	6	5		5	WNK1	12	991215	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08		991215	132860680	657	89024											
CACNA1C	775	broad.mit.edu	37	chr12	2714278	2714278	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgtcgtgaagatcttgCgagtcctgcgagtactcagg	12	9	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2714278	T	T	2714278	4	4	85	1	0	0	0	0	0	1	0	0	2566	760	27	4	3254	4	CACNA1C	12	2714278	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1723063	2714278	131137617	658	89025											
ANO2	57101	broad.mit.edu	37	chr12	6030514	6030514	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacacaggctcattggcatCcagatagttgttgatgacct	11	9	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6030514	T	T	6030514	3	4	85	1	0	0	0	0	1	0	0	0	697	855	30	4	2878	4	ANO2	12	6030514	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3316236	6030514	127821381	659	89026											
ANO2	57101	broad.mit.edu	37	chr12	6055196	6055196	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagacctccaaagggcccttCtgcacgatggaatctgcaac	9	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6055196	A	A	6055196	1	1	85	0	1	0	0	0	0	0	0	0	697	928	32	3		3	ANO2	12	6055196	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	24682	6055196	127796699	660	89027											
VWF	7450	broad.mit.edu	37	chr12	6232233	6232233	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgagctccagacacaccTgctgattcccggaaaggtgt	12	11	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6232233	A	A	6232233	1	1	85	0	1	0	0	0	0	0	0	0	17373	1595	55	5		5	VWF	12	6232233	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	177037	6232233	127619662	661	89028											
CLEC4A	50856	broad.mit.edu	37	chr12	8278090	8278090	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagaaaagagagagaaagagGaggaggaagaagaggaagta	17	0	0	6			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8278090	C	C	8278090	1	2	85	0	1	0	0	0	0	0	0	0	3544	1189	41	4		4	CLEC4A	12	8278090	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2045857	8278090	125573805	662	89029											
CLEC4D	338339	broad.mit.edu	37	chr12	8670788	8670788	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaacttttcacgctgtaaGagaggcacaggagtgcacaa	10	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8670788	C	C	8670788	3	2	85	1	0	0	0	0	1	0	0	0	3546	933	33	4	160	4	CLEC4D	12	8670788	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	392698	8670788	125181107	663	89030											
A2ML1	144568	broad.mit.edu	37	chr12	8975341	8975341	+	Intron	DEL	G	-	-													gtgtcagaattggtttattaGggcagcggcttcttcgccta							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8975341	-	-	8975341	6	5	85	0	1	1	0	1	0	0	0	0	5	1015	35	0		0	A2ML1	12	8975341	Intron	DEL	G	TCGA-17-Z056-01A-01W-0747-08	304553	8975341	124876554	664	89031											
PZP	5858	broad.mit.edu	37	chr12	9318871	9318871	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcacatgtgagacgttagAgaacaaaattttcagttttc	9	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9318871	T	T	9318871	1	4	85	0	1	0	0	0	0	0	0	0	12977	319	11	5		5	PZP	12	9318871	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	343530	9318871	124533024	665	89032											
KLRB1	3820	broad.mit.edu	37	chr12	9751094	9751094	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtattttatttaatgatttaCcaattcatccttatctcgaa	3	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9751094	T	T	9751094	5	4	85	1	0	0	0	0	0	0	1	0	8485	521	18	4	273	4	KLRB1	12	9751094	Splice_Site	SNP	C	TCGA-17-Z056-01A-01W-0747-08	432223	9751094	124100801	666	89033											
KLRF1	51348	broad.mit.edu	37	chr12	9986178	9986178	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataagtctacttttcattcAaaactcgatttaggtatctt	4	7	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9986178	G	G	9986178	1	3	85	0	1	0	0	0	0	0	0	0	8491	145	5	5		5	KLRF1	12	9986178	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	235084	9986178	123865717	667	89034											
KLRC4	8302	broad.mit.edu	37	chr12	10560133	10560133	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatactacacagacttaaaaAtatatgaagtaaatatatgt	4	4	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10560133	T	T	10560133	1	4	85	0	1	0	0	0	0	0	0	0	8489	116	4	5		5	KLRC4	12	10560133	3'UTR	SNP	A	TCGA-17-Z056-01A-01W-0747-08	573955	10560133	123291762	668	89035											
PIK3C2G	5288	broad.mit.edu	37	chr12	18691352	18691352	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttccccaaggagctattcgGaagagaaaggaatgagaaaa	12	6	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18691352	T	T	18691352	1	4	85	0	1	0	0	0	0	0	0	0	12006	1189	41	3		3	PIK3C2G	12	18691352	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8131219	18691352	115160543	669	89036											
PDE3A	5139	broad.mit.edu	37	chr12	20523218	20523218	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctcggctcttggaaacttGaaacacttggcaaccggcgc	10	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20523218	C	C	20523218	1	2	85	0	1	0	0	0	0	0	0	0	11731	1305	45	4		4	PDE3A	12	20523218	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1831866	20523218	113328677	670	89037											
SLCO1B3	28234	broad.mit.edu	37	chr12	21168786	21168786	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgtttttaacacttggcTctcagccaggtgtaaatttg	8	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21168786	A	A	21168786	1	1	85	0	1	0	0	0	0	0	0	0	14838	1566	54	5		5	SLCO1B3	12	21168786	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	645568	21168786	112683109	671	89038											
LST-3TM12	338821	broad.mit.edu	37	chr12	21201840	21201840	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaaccttgacctatgatGggtttgtatatataattgga	9	6	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21201840	T	T	21201840	4	4	85	1	0	0	0	0	0	1	0	0	9153	1362	47	2	1219	2	LST-3TM12	12	21201840	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	33054	21201840	112650055	672	89039											
KCNJ8	3764	broad.mit.edu	37	chr12	21926239	21926239	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccattccacttttctccatGtaagcatagatgtccccatg	5	13	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21926239	A	A	21926239	2	1	85	1	0	0	0	0	0	0	0	1	8126	1372	48	4		4	KCNJ8	12	21926239	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	724399	21926239	111925656	673	89040											
OVCH1	341350	broad.mit.edu	37	chr12	29631706	29631706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttattttagatcctttaGcatctctttggtctttcaga	5	7	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29631706	T	T	29631706	1	4	85	0	1	0	0	0	0	0	0	0	11417	986	34	3		3	OVCH1	12	29631706	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7705467	29631706	104220189	674	89041											
TMTC1	83857	broad.mit.edu	37	chr12	29659634	29659634	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcagcactgggctaccaGcagatgtcccaaaatgtgtc	9	13	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29659634	T	T	29659634	1	4	85	0	1	0	0	0	0	0	0	0	16383	986	34	3		3	TMTC1	12	29659634	3'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	27928	29659634	104192261	675	89042											
DENND5B	160518	broad.mit.edu	37	chr12	31605212	31605212	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacattgccgttctttttgtCattgaccaagtctttcagaa	7	9	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31605212	T	T	31605212	3	4	85	1	0	0	0	0	1	0	0	0	4477	826	29	4	2601	4	DENND5B	12	31605212	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1945578	31605212	102246683	676	89043											
DNM1L	10059	broad.mit.edu	37	chr12	32895728	32895728	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttgggtagtagatagaaAcatagaaatagttttaaatg	9	2	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32895728	G	G	32895728	1	3	85	0	1	0	0	0	0	0	0	0	4711	58	2	5		5	DNM1L	12	32895728	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1290516	32895728	100956167	677	89044											
SYT10	341359	broad.mit.edu	37	chr12	33535163	33535163	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaatgaattttcaaggaatCattattccctcctccaattt	3	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33535163	A	A	33535163	1	1	85	0	1	0	0	0	0	0	0	0	15585	841	29	3		3	SYT10	12	33535163	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	639435	33535163	100316732	678	89045											
C12orf40	283461	broad.mit.edu	37	chr12	40044092	40044092	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttccaaattaaataaaagtCaagatgttttcagtccatca	4	7	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40044092	A	A	40044092	3	1	85	1	0	0	0	0	1	0	0	0	1699	827	29	3	648	3	C12orf40	12	40044092	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6508929	40044092	93807803	679	89046											
LRRK2	120892	broad.mit.edu	37	chr12	40745422	40745422	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacgtaattgttgaatgcAtggttgctacacatcacaac	7	8	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40745422	T	T	40745422	3	4	85	1	0	0	0	0	1	0	0	0	9120	217	8	5	6637	5	LRRK2	12	40745422	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	701330	40745422	93106473	680	89047											
CNTN1	1272	broad.mit.edu	37	chr12	41421699	41421699	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcatcagttcagtaaggtcTggttcacgctatataatcac	7	9	6	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41421699	A	A	41421699	2	1	85	1	0	0	0	0	0	0	0	1	3672	1567	55	5		5	CNTN1	12	41421699	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	676277	41421699	92430196	681	89048											
PRICKLE1	144165	broad.mit.edu	37	chr12	42858653	42858653	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttcctgctctactctgcCtttccaaaattcttcactgg	5	13	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42858653	T	T	42858653	3	4	85	1	0	0	0	0	1	0	0	0	12592	681	24	4	1320	4	PRICKLE1	12	42858653	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1436954	42858653	90993242	682	89049											
ADAMTS20	80070	broad.mit.edu	37	chr12	43896100	43896101	+	Missense_Mutation	DNP	GG	AT	AT													gtcttctttcatctttcaatGgtacattttttgatgtgtgt							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43896101	AT	AT	43896100	3	1	85	1	0	0	0	0	1	0	0	0	266	1348	47	4	5153	4	ADAMTS20	12	43896100	Missense_Mutation	DNP	GG	TCGA-17-Z056-01A-01W-0747-08	1037447	43896100	89955795	683	89050											
KIAA0748	9840	broad.mit.edu	37	chr12	55356979	55356979	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacataggagtagagacagaAgaaggcatcagcagtgacag	13	7	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55356979	T	T	55356979	3	4	85	1	0	0	0	0	1	0	0	0	8260	72	3	5	870	5	KIAA0748	12	55356979	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	11460879	55356979	78494916	684	89051											
PA2G4	5036	broad.mit.edu	37	chr12	56500854	56500854	+	Missense_Mutation	SNP	C	T	T													agagcgaccaggattatattCtcaaggaaggtgacttggta							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56500854	T	T	56500854	3	4	85	1	0	0	0	0	1	0	0	0	11455	913	32	4	308	4	PA2G4	12	56500854	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1143875	56500854	77351041	685	89052	402	2									
PA2G4	5036	broad.mit.edu	37	chr12	56500856	56500856	+	Silent	SNP	C	T	T													agcgaccaggattatattctCaaggaaggtgacttggtaaa							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56500856	T	T	56500856	2	4	85	1	0	0	0	0	0	0	0	1	11455	813	29	4		4	PA2G4	12	56500856	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2	56500856	77351039	686	89053	402	2									
RDH16	8608	broad.mit.edu	37	chr12	57345786	57345786	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagcacaccccaaatcCatgcaaccatgcatccaacc	3	18	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57345786	T	T	57345786	1	4	85	0	1	0	0	0	0	0	0	0	13302	609	21	4		4	RDH16	12	57345786	3'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	844930	57345786	76506109	687	89054											
RDH16	8608	broad.mit.edu	37	chr12	57351181	57351181	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctcaggtggctcagcacCtgcctctcccggtaccagtg	10	16	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57351181	T	T	57351181	2	4	85	1	0	0	0	0	0	0	0	1	13302	680	24	4		4	RDH16	12	57351181	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5395	57351181	76500714	688	89055											
MBD6	114785	broad.mit.edu	37	chr12	57919610	57919610	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccaccctggtcctgcctctCagccaccagtgtcttcagcc	7	20	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57919610	G	G	57919610	3	3	85	1	0	0	0	0	1	0	0	0	9441	827	29	4	873	4	MBD6	12	57919610	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	568429	57919610	75932285	689	89056											
DCTN2	10540	broad.mit.edu	37	chr12	57939923	57939923	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaacctcactacccagcatCcaacaacaccccttccccca	1	23	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57939923	A	A	57939923	1	1	85	0	1	0	0	0	0	0	0	0	4340	870	30	3		3	DCTN2	12	57939923	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	20313	57939923	75911972	690	89057											
KIF5A	3798	broad.mit.edu	37	chr12	57943952	57943952	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactctgtccccagagactgAgcacctgtcctccgcctcgg	9	17	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57943952	T	T	57943952	1	4	85	0	1	0	0	0	0	0	0	0	8375	319	11	5		5	KIF5A	12	57943952	5'UTR	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4029	57943952	75907943	691	89058											
CPM	1368	broad.mit.edu	37	chr12	69265736	69265736	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcagctcccgcccaacagTctatatgtgttaaagagaaa	8	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69265736	A	A	69265736	3	1	85	1	0	0	0	0	1	0	0	0	3840	1681	58	5	1096	5	CPM	12	69265736	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	11321784	69265736	64586159	692	89059											
LRRC10	376132	broad.mit.edu	37	chr12	70004207	70004207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcagctcacagaccacatCcggcagctgggtgaggcagt	12	13	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70004207	A	A	70004207	3	1	85	1	0	0	0	0	1	0	0	0	9054	855	30	3	425	3	LRRC10	12	70004207	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	738471	70004207	63847688	693	89060											
PTPRB	5787	broad.mit.edu	37	chr12	71016238	71016238	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtctgtaattccagtcaTgtgcagattgggatgctgcc	12	8	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71016238	A	A	71016238	3	1	85	1	0	0	0	0	1	0	0	0	12904	1464	51	5	6193	5	PTPRB	12	71016238	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1012031	71016238	62835657	694	89061											
TRHDE	29953	broad.mit.edu	37	chr12	72956678	72956678	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taaatatacaagaagtaatgGatcagtggacactccagatg	9	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72956678	C	C	72956678	3	2	85	1	0	0	0	0	1	0	0	0	16603	1174	41	4	1799	4	TRHDE	12	72956678	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1940440	72956678	60895217	695	89062											
KRR1	11103	broad.mit.edu	37	chr12	75900017	75900017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaataaaattataaagCattatccaataaactatatt	2	4	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75900017	A	A	75900017	1	1	85	0	1	0	0	0	0	0	0	0	8517	725	25	3		3	KRR1	12	75900017	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2943339	75900017	57951878	696	89063											
NAV3	89795	broad.mit.edu	37	chr12	78401054	78401054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcaagtgcttctagttGtcctgcccctttggaaggaa	11	9	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78401054	T	T	78401054	3	4	85	1	0	0	0	0	1	0	0	0	10279	1377	48	3	1766	3	NAV3	12	78401054	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2501037	78401054	55450841	697	89064											
ALX1	8092	broad.mit.edu	37	chr12	85694976	85694976	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcaagtggtggttctgTggttacttcatgcatgttac	11	6	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85694976	A	A	85694976	3	1	85	1	0	0	0	0	1	0	0	0	556	1696	59	5	718	5	ALX1	12	85694976	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	7293922	85694976	48156919	698	89065											
TMTC3	160418	broad.mit.edu	37	chr12	88568529	88568529	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgttgttcagaatgacagGaaagtatgtcatcagtgatt	11	4	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88568529	A	A	88568529	1	1	85	0	1	0	0	0	0	0	0	0	16385	1189	41	4		4	TMTC3	12	88568529	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2873553	88568529	45283366	699	89066											
C12orf12	196477	broad.mit.edu	37	chr12	91348302	91348303	+	Missense_Mutation	DNP	GG	TT	TT													gtggttggaaccaaaagcccGggccgtgctgttgcttcggc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	91348303	TT	TT	91348302	3	4	85	1	0	0	0	0	1	0	0	0	1689	1116	39	1	1006	1	C12orf12	12	91348302	Missense_Mutation	DNP	GG	TCGA-17-Z056-01A-01W-0747-08	2779773	91348302	42503593	700	89067											
FGD6	55785	broad.mit.edu	37	chr12	95483427	95483427	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgataaggcacttgaaggaGatttgtgatttccaggagat	12	4	0	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95483427	C	C	95483427	3	2	85	1	0	0	0	0	1	0	0	0	5894	942	33	4	412	4	FGD6	12	95483427	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4135125	95483427	38368468	701	89068											
HAL	3034	broad.mit.edu	37	chr12	96386317	96386317	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccccatctaactatcctaCtttttgccaacggcatttcc	3	16	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96386317	G	G	96386317	1	3	85	0	1	0	0	0	0	0	0	0	7013	580	20	4		4	HAL	12	96386317	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	902890	96386317	37465578	702	89069											
CDK17	5128	broad.mit.edu	37	chr12	96704920	96704920	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatatccatcaggtattctGatgtctgcaggcagtgataa	10	7	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96704920	T	T	96704920	2	4	85	1	0	0	0	0	0	0	0	1	3163	1280	45	3		3	CDK17	12	96704920	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	318603	96704920	37146975	703	89070											
C12orf63	374467	broad.mit.edu	37	chr12	97073555	97073555	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgcatgttctgtatctctGaatctttctttatgtggggt	9	6	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97073555	C	C	97073555	1	2	85	0	1	0	0	0	0	0	0	0	1719	1305	45	4		4	C12orf63	12	97073555	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	368635	97073555	36778340	704	89071											
NEDD1	121441	broad.mit.edu	37	chr12	97334423	97334423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctattcacggatcagtttGctaattttctccatccctgg	6	12	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97334423	T	T	97334423	1	4	85	0	1	0	0	0	0	0	0	0	10404	1334	46	3		3	NEDD1	12	97334423	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	260868	97334423	36517472	705	89072											
GOLGA2B	55592	broad.mit.edu	37	chr12	100551026	100551026	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggctctggtacagtgcgaTgtactctcctgcaggaggac	13	11	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100551026	G	G	100551026	3	3	85	1	0	0	0	0	1	0	0	0	6617	1464	51	5	143	5	GOLGA2B	12	100551026	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3216603	100551026	33300869	706	89073											
STAB2	55576	broad.mit.edu	37	chr12	104099498	104099498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccaaaatgtgtgagaaCcgtcattgtgagtacaataa	9	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104099498	A	A	104099498	3	1	85	1	0	0	0	0	1	0	0	0	15356	507	18	3	4135	3	STAB2	12	104099498	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3548472	104099498	29752397	707	89074											
TCP11L2	255394	broad.mit.edu	37	chr12	106715430	106715430	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaagctgtgtgctcccgtgcGagataatgatatcagagagt	12	7	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106715430	C	C	106715430	3	2	85	1	0	0	0	0	1	0	0	0	15837	1058	37	4	595	4	TCP11L2	12	106715430	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2615932	106715430	27136465	708	89075											
BTBD11	121551	broad.mit.edu	37	chr12	107914306	107914306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaatcttcacagagaccCacagcggtcaaacaagccag	8	14	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107914306	A	A	107914306	3	1	85	1	0	0	0	0	1	0	0	0	1548	594	21	2	1184	2	BTBD11	12	107914306	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1198876	107914306	25937589	709	89076											
WSCD2	9671	broad.mit.edu	37	chr12	108589999	108589999	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagagcgaggtaagagCgaggaacatctggacactga	16	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108589999	T	T	108589999	1	4	85	0	1	0	0	0	0	0	0	0	17534	783	27	4		4	WSCD2	12	108589999	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	675693	108589999	25261896	710	89077											
WSCD2	9671	broad.mit.edu	37	chr12	108625802	108625802	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcaatggagagggaacAgcatgcatgaaggcactatg	16	6	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108625802	G	G	108625802	1	3	85	0	1	0	0	0	0	0	0	0	17534	203	7	5		5	WSCD2	12	108625802	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	35803	108625802	25226093	711	89078											
ATP2A2	488	broad.mit.edu	37	chr12	110764236	110764236	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcacactgatcccgtccctGacccacgagctgtcaaccaa	7	17	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110764236	A	A	110764236	3	1	85	1	0	0	0	0	1	0	0	0	1141	1290	45	4	612	4	ATP2A2	12	110764236	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2138434	110764236	23087659	712	89079											
ATP2A2	488	broad.mit.edu	37	chr12	110777088	110777088	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttgttccctttgtaggtCattaaacagctgatgaaaaa	7	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110777088	T	T	110777088	2	4	85	1	0	0	0	0	0	0	0	1	1141	813	29	4		4	ATP2A2	12	110777088	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	12852	110777088	23074807	713	89080											
CUX2	23316	broad.mit.edu	37	chr12	111786100	111786100	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtagagcgggctgccaatCgggaggaggccctggagtgg	20	8	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111786100	A	A	111786100	2	1	85	1	0	0	0	0	0	0	0	1	4098	875	31	3		3	CUX2	12	111786100	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1009012	111786100	22065795	714	89081											
C12orf51	283450	broad.mit.edu	37	chr12	112701973	112701973	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatagtgttactgagaaggTgattctgaactgccatcaga	10	6	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112701973	A	A	112701973	3	1	85	1	0	0	0	0	1	0	0	0	1709	1696	59	5	10863	5	C12orf51	12	112701973	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	915873	112701973	21149922	715	89082											
RBM19	9904	broad.mit.edu	37	chr12	114395746	114395746	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acggcttcatcttcactttcCtcttcctccgaggaagagga	8	13	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114395746	G	G	114395746	3	3	85	1	0	0	0	0	1	0	0	0	13229	680	24	4	2277	4	RBM19	12	114395746	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1693773	114395746	19456149	716	89083											
TBX3	6926	broad.mit.edu	37	chr12	115120697	115120698	+	Missense_Mutation	DNP	GG	TT	TT													ttagcctccaggtgcaccttGgggtcgtcctccacctcttc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	115120698	TT	TT	115120697	3	4	85	1	0	0	0	0	1	0	0	0	15781	1335	47	2	1954	2	TBX3	12	115120697	Missense_Mutation	DNP	GG	TCGA-17-Z056-01A-01W-0747-08	724951	115120697	18731198	717	89084											
CCDC60	160777	broad.mit.edu	37	chr12	119966424	119966424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatacaaccttgtaggcgcCaagaagagagaggtatccag	11	9	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119966424	A	A	119966424	3	1	85	1	0	0	0	0	1	0	0	0	2859	595	21	2	1280	2	CCDC60	12	119966424	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4845727	119966424	13885471	718	89085											
RILPL1	353116	broad.mit.edu	37	chr12	123983372	123983372	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtagctcaggttgtacaCtgcacaacggcaaaccatcc	10	13	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123983372	T	T	123983372	1	4	85	0	1	0	0	0	0	0	0	0	13470	580	20	4		4	RILPL1	12	123983372	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4016948	123983372	9868523	719	89086											
UBC	7316	broad.mit.edu	37	chr12	125397084	125397084	+	Missense_Mutation	SNP	C	T	T													aggagggatgccttccttgtCttggatctttgccttgacat							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125397084	T	T	125397084	3	4	85	1	0	0	0	0	1	0	0	0	16968	913	32	4	827	4	UBC	12	125397084	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1413712	125397084	8454811	720	89087	403	2									
UBC	7316	broad.mit.edu	37	chr12	125397091	125397091	+	Missense_Mutation	SNP	C	G	G													atgccttccttgtcttggatCtttgccttgacattctcaat							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125397091	G	G	125397091	3	3	85	1	0	0	0	0	1	0	0	0	16968	912	32	4	834	4	UBC	12	125397091	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7	125397091	8454804	721	89088	403	2									
TMEM132B	114795	broad.mit.edu	37	chr12	126128651	126128651	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgtgattccatttttgtGaatgggaaggaaatgaagag	12	3	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126128651	T	T	126128651	2	4	85	1	0	0	0	0	0	0	0	1	16169	1277	45	3		3	TMEM132B	12	126128651	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	731560	126128651	7723244	722	89089											
TMEM132D	121256	broad.mit.edu	37	chr12	129559150	129559150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaggatggacctgtctGtcgtggtgccccgtccctcc	12	15	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129559150	T	T	129559150	3	4	85	1	0	0	0	0	1	0	0	0	16170	1377	48	3	733	3	TMEM132D	12	129559150	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3430499	129559150	4292745	723	89090											
PUS1	80324	broad.mit.edu	37	chr12	132426187	132426187	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagatccggaagatggtcGgcctggtggtggccattgtg	16	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132426187	A	A	132426187	3	1	85	1	0	0	0	0	1	0	0	0	12938	1116	39	4	913	4	PUS1	12	132426187	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2867037	132426187	1425708	724	89091											
CHFR	55743	broad.mit.edu	37	chr12	133432932	133432932	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagccatttaagagcttGgctgctcagggcagaactag	11	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133432932	C	C	133432932	1	2	85	0	1	0	0	0	0	0	0	0	3368	1363	47	4		4	CHFR	12	133432932	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1006745	133432932	418963	725	89092											
ZNF10	7556	broad.mit.edu	37	chr12	133732811	133732812	+	Frame_Shift_Ins	INS	-	T	T													ctatgaatgtaaagaatgtgINSgaaaatccttcagctggttc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133732812	T	T	133732811	7	5	85	1	0	1	1	0	0	0	0	0	17838	1349	47	0	993	0	ZNF10	12	133732811	Frame_Shift_Ins	INS	-	TCGA-17-Z056-01A-01W-0747-08	299879	133732811	119084	726	89093											
SKA3	221150	broad.mit.edu	37	chr13	21742500	21742500	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaattttcacaattagAcaactctgggtcagagttaa	7	7	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21742500	T	T	21742500	3	4	85	1	0	0	0	0	1	0	0	0	14467	275	10	5	939	5	SKA3	13	21742500	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08		21742500	93427378	727	89094											
SPATA13	221178	broad.mit.edu	37	chr13	24852922	24852922	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atactcaaaaaagaaaaataTagaaaagaaaaaaaatgtgc	5	3	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24852922	C	C	24852922	1	2	85	0	1	0	0	0	0	0	0	0	15116	1421	49	5		5	SPATA13	13	24852922	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3110422	24852922	90316956	728	89095											
ATP12A	479	broad.mit.edu	37	chr13	25284123	25284123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacacgtgtttggcctttgCcaggtctcatggcacagcct	11	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25284123	A	A	25284123	1	1	85	0	1	0	0	0	0	0	0	0	1126	754	26	3		3	ATP12A	13	25284123	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	431201	25284123	89885755	729	89096											
FLT1	2321	broad.mit.edu	37	chr13	29001430	29001430	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctggaaacgatgacacGgccttttcgtaaatctgggg	14	8	2	1	rs61763178	byFrequency;by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29001430	T	T	29001430	2	4	85	1	0	0	0	0	0	0	0	1	5999	1103	39	1		1	FLT1	13	29001430	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3717307	29001430	86168448	730	89097											
NBEA	26960	broad.mit.edu	37	chr13	35630283	35630283	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatgtaagtctttatttttCtgtctgtgttttaatttgtt	7	3	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35630283	G	G	35630283	1	3	85	0	1	0	0	0	0	0	0	0	10281	928	32	4		4	NBEA	13	35630283	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6628853	35630283	79539595	731	89098											
FAM48A	55578	broad.mit.edu	37	chr13	37598127	37598127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttaagaaacactaatgCaaaagcttatgaagatttaa	6	5	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37598127	A	A	37598127	1	1	85	0	1	0	0	0	0	0	0	0	5623	725	25	3		3	FAM48A	13	37598127	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1967844	37598127	77571751	732	89099											
FOXO1	2308	broad.mit.edu	37	chr13	41134738	41134738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgagagccagggcttGcaggccatttggaaaactgt	14	8	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41134738	T	T	41134738	3	4	85	1	0	0	0	0	1	0	0	0	6083	1319	46	3	1081	3	FOXO1	13	41134738	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3536611	41134738	74035140	733	89100											
CAB39L	81617	broad.mit.edu	37	chr13	49933675	49933675	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacattaaggtgcaaagaaAggattttgctgcagtaatca	9	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49933675	G	G	49933675	1	3	85	0	1	0	0	0	0	0	0	0	2552	87	3	5		5	CAB39L	13	49933675	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	8798937	49933675	65236203	734	89101											
ATP7B	540	broad.mit.edu	37	chr13	52548394	52548394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagagaaactttaaaattcCcaggtggaagtgcctcgata	10	7	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52548394	T	T	52548394	3	4	85	1	0	0	0	0	1	0	0	0	1195	623	22	4	3515	4	ATP7B	13	52548394	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2614719	52548394	62621484	735	89102											
ATP7B	540	broad.mit.edu	37	chr13	52548417	52548417	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaagtgcctcgatagcCctctgcagagccactgggct	14	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52548417	G	G	52548417	3	3	85	1	0	0	0	0	1	0	0	0	1195	622	22	4	3538	4	ATP7B	13	52548417	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	23	52548417	62621461	736	89103											
LECT1	11061	broad.mit.edu	37	chr13	53277900	53277900	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctatacaacagattccttCgtgatccagtctagggtcga	8	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53277900	T	T	53277900	3	4	85	1	0	0	0	0	1	0	0	0	8784	893	31	4	173	4	LECT1	13	53277900	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	729483	53277900	61891978	737	89104											
OLFM4	10562	broad.mit.edu	37	chr13	53603113	53603113	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actccagctccagcttcagcTccagctccaggtcgggctcc	9	18	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53603113	A	A	53603113	3	1	85	1	0	0	0	0	1	0	0	0	10950	1551	54	5	144	5	OLFM4	13	53603113	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	325213	53603113	61566765	738	89105											
PCDH17	27253	broad.mit.edu	37	chr13	58240938	58240938	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcaagatgaaaactaCttcaactaaaagccaaccac	5	12	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58240938	T	T	58240938	3	4	85	1	0	0	0	0	1	0	0	0	11606	565	20	4	2778	4	PCDH17	13	58240938	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4637825	58240938	56928940	739	89106											
PCDH17	27253	broad.mit.edu	37	chr13	58299211	58299211	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtaagcaaccaagagaccCtcccttcatggcttccgatc	7	14	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58299211	G	G	58299211	3	3	85	1	0	0	0	0	1	0	0	0	11606	681	24	4	3277	4	PCDH17	13	58299211	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	58273	58299211	56870667	740	89107											
KLHL1	57626	broad.mit.edu	37	chr13	70681450	70681450	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccatgcctggcaccacctCctcctctagtgactccacgt	7	18	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70681450	A	A	70681450	4	1	85	1	0	0	0	0	0	1	0	0	8436	864	30	3	1908	3	KLHL1	13	70681450	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	12382239	70681450	44488428	741	89108											
DACH1	1602	broad.mit.edu	37	chr13	72063200	72063200	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaaggagatggaaaacctgGaggcagtggttgtccatgcc	14	7	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72063200	A	A	72063200	3	1	85	1	0	0	0	0	1	0	0	0	4253	1174	41	4	489	4	DACH1	13	72063200	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1381750	72063200	43106678	742	89109											
TBC1D4	9882	broad.mit.edu	37	chr13	75886873	75886873	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttagggagtgcaacacagaCcttgctgttgcattgctgag	12	9	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75886873	G	G	75886873	5	3	85	1	0	0	0	0	0	0	1	0	15744	521	18	4	1548	4	TBC1D4	13	75886873	Splice_Site	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3823673	75886873	39283005	743	89110											
LMO7	4008	broad.mit.edu	37	chr13	76197468	76197468	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcattaaggtaatatttttCtgtattttctaaggcagaat	6	5	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76197468	T	T	76197468	1	4	85	0	1	0	0	0	0	0	0	0	8929	928	32	4		4	LMO7	13	76197468	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	310595	76197468	38972410	744	89111											
SLITRK5	26050	broad.mit.edu	37	chr13	88329956	88329956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccgctcccgagagggcaaCtccgtagaggattacaaaga	11	11	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88329956	A	A	88329956	3	1	85	1	0	0	0	0	1	0	0	0	14860	564	20	3	2315	3	SLITRK5	13	88329956	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	12132488	88329956	26839922	745	89112											
GPC6	10082	broad.mit.edu	37	chr13	94938599	94938599	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcatgttcctgtattttaAcagatgcaatgctcttggtg	8	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94938599	G	G	94938599	1	3	85	0	1	0	0	0	0	0	0	0	6667	58	2	5		5	GPC6	13	94938599	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	6608643	94938599	20231279	746	89113											
UGGT2	55757	broad.mit.edu	37	chr13	96505871	96505871	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagcctgtcacctgctcCaattctcctgaacttcttga	6	15	3	3	rs143548603		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96505871	A	A	96505871	4	1	85	1	0	0	0	0	0	1	0	0	17068	603	21	2	356	2	UGGT2	13	96505871	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1567272	96505871	18664007	747	89114											
SLC15A1	6564	broad.mit.edu	37	chr13	99373969	99373969	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctaatgtacttaaaaagaatCcgatgtagaacagactttgt	7	6	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99373969	T	T	99373969	1	4	85	0	1	0	0	0	0	0	0	0	14511	870	30	4		4	SLC15A1	13	99373969	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2868098	99373969	15795909	748	89115											
NALCN	259232	broad.mit.edu	37	chr13	101762987	101762987	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacatcttgagtcaaagtttCaagagattttcccctgctga	7	9	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101762987	T	T	101762987	3	4	85	1	0	0	0	0	1	0	0	0	10242	835	29	4	2969	4	NALCN	13	101762987	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2389018	101762987	13406891	749	89116											
NALCN	259232	broad.mit.edu	37	chr13	101797103	101797103	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatgcaattaaagaagtatTttggtacctgattttaggaa	8	3	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101797103	A	A	101797103	1	1	85	0	1	0	0	0	0	0	0	0	10242	1856	64	5		5	NALCN	13	101797103	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	34116	101797103	13372775	750	89117											
MYO16	23026	broad.mit.edu	37	chr13	109817277	109817277	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actaacatgaacataagtagCcgagatgaccctagtacgtc	8	10	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109817277	G	G	109817277	3	3	85	1	0	0	0	0	1	0	0	0	10158	738	26	4	5253	4	MYO16	13	109817277	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	8020174	109817277	5352601	751	89118											
CUL4A	8451	broad.mit.edu	37	chr13	113907476	113907476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagtggcaaactactttGggacatgctgttttaaaagc	9	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113907476	T	T	113907476	3	4	85	1	0	0	0	0	1	0	0	0	4090	1339	47	2	1781	2	CUL4A	13	113907476	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4090199	113907476	1262402	752	89119											
OR4K14	122740	broad.mit.edu	37	chr14	20483416	20483416	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcctgtcatttgcagcaAcacctcaaggacattgtatt	6	10	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20483416	G	G	20483416	1	3	85	0	1	0	0	0	0	0	0	0	11163	58	2	5		5	OR4K14	14	20483416	5'Flank	SNP	A	TCGA-17-Z056-01A-01W-0747-08		20483416	86866124	753	89120											
OR11H4	390442	broad.mit.edu	37	chr14	20711551	20711551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggctctatcctgtgccCcagctcccataactgaatgt	8	13	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20711551	A	A	20711551	3	1	85	1	0	0	0	0	1	0	0	0	11022	623	22	2	603	2	OR11H4	14	20711551	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	228135	20711551	86637989	754	89121											
TEP1	7011	broad.mit.edu	37	chr14	20859093	20859093	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatggtgggtgttgagtgtcTgacctggacttgagcctgga	17	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20859093	A	A	20859093	1	1	85	0	1	0	0	0	0	0	0	0	15881	1595	55	5		5	TEP1	14	20859093	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	147542	20859093	86490447	755	89122											
RNASE9	390443	broad.mit.edu	37	chr14	21025307	21025307	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccatttcctgtgtggggCacagttatgccacatgttgc	10	11	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21025307	T	T	21025307	1	4	85	0	1	0	0	0	0	0	0	0	13521	725	25	4		4	RNASE9	14	21025307	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	166214	21025307	86324233	756	89123											
SLC39A2	29986	broad.mit.edu	37	chr14	21468371	21468371	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggagagtgaggagaaccaGagaggcctttcatatccaga	13	8	1	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21468371	C	C	21468371	1	2	85	0	1	0	0	0	0	0	0	0	14732	957	33	4		4	SLC39A2	14	21468371	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	443064	21468371	85881169	757	89124											
MYH6	4624	broad.mit.edu	37	chr14	23869690	23869690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggtgtgagtggccattGgggctgtgcccgtgcactgt	18	8	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23869690	T	T	23869690	1	4	85	0	1	0	0	0	0	0	0	0	10132	1363	47	2		2	MYH6	14	23869690	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2401319	23869690	83479850	758	89125											
AP1G2	8906	broad.mit.edu	37	chr14	24035477	24035477	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcacgtgccaggagtcccGccatctcaccttcttgcgca	10	16	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24035477	A	A	24035477	1	1	85	0	1	0	0	0	0	0	0	0	735	1102	38	4		4	AP1G2	14	24035477	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	165787	24035477	83314063	759	89126											
CMA1	1215	broad.mit.edu	37	chr14	24977420	24977420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaagagaaagagcagcaGggggagaggaagaagcagca	17	6	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24977420	T	T	24977420	3	4	85	1	0	0	0	0	1	0	0	0	3606	991	35	2	741	2	CMA1	14	24977420	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	941943	24977420	82372120	760	89127											
STXBP6	29091	broad.mit.edu	37	chr14	25326189	25326189	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcaatcagagagtcatcTtgtgaaaagaatgcctttgc	10	7	4	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25326189	G	G	25326189	1	3	85	0	1	0	0	0	0	0	0	0	15476	1624	56	5		5	STXBP6	14	25326189	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	348769	25326189	82023351	761	89128											
PRKD1	5587	broad.mit.edu	37	chr14	30108094	30108094	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctcgaccaataaacgacTctgatggtgatttttgctac	7	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30108094	G	G	30108094	3	3	85	1	0	0	0	0	1	0	0	0	12624	1551	54	5	2081	5	PRKD1	14	30108094	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	4781905	30108094	77241446	762	89129											
SLC25A21	89874	broad.mit.edu	37	chr14	37153826	37153826	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttgtcatatatattcgcAgtttcttagacacaagctcc	6	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37153826	T	T	37153826	1	4	85	0	1	0	0	0	0	0	0	0	14598	203	7	5		5	SLC25A21	14	37153826	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	7045732	37153826	70195714	763	89130											
LRFN5	145581	broad.mit.edu	37	chr14	42356224	42356224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatttgatactgaacaaCaatcagctgactttaatttc	4	9	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356224	A	A	42356224	3	1	85	1	0	0	0	0	1	0	0	0	9028	477	17	3	398	3	LRFN5	14	42356224	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5202398	42356224	64993316	764	89131											
FANCM	57697	broad.mit.edu	37	chr14	45645649	45645649	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagggatttattttctgttaCctttgatttaggattctgta	8	4	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45645649	T	T	45645649	3	4	85	1	0	0	0	0	1	0	0	0	5728	507	18	4	3746	4	FANCM	14	45645649	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3289425	45645649	61703891	765	89132											
MDGA2	161357	broad.mit.edu	37	chr14	47343335	47343335	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtactttgctttgtccagtCaaaattatctgtatcatctt	5	8	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47343335	A	A	47343335	3	1	85	1	0	0	0	0	1	0	0	0	9500	826	29	3	591	3	MDGA2	14	47343335	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1697686	47343335	60006205	766	89133											
KCNH5	27133	broad.mit.edu	37	chr14	63179419	63179419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccttcacagagcgtttgCcatggagaaccatccctgaa	8	14	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63179419	A	A	63179419	1	1	85	0	1	0	0	0	0	0	0	0	8105	739	26	3		3	KCNH5	14	63179419	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	15836084	63179419	44170121	767	89134											
SPTB	6710	broad.mit.edu	37	chr14	65258407	65258407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagatgttgagagacaatgCccccgccccatgccctaccc	8	17	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65258407	T	T	65258407	1	4	85	0	1	0	0	0	0	0	0	0	15236	754	26	4		4	SPTB	14	65258407	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2078988	65258407	42091133	768	89135											
ZFYVE1	53349	broad.mit.edu	37	chr14	73490891	73490891	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctccttttgttacccccaGaatgagtcctcttctggcac	7	14	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73490891	A	A	73490891	3	1	85	1	0	0	0	0	1	0	0	0	17789	942	33	4	2051	4	ZFYVE1	14	73490891	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8232484	73490891	33858649	769	89136											
ACOT2	10965	broad.mit.edu	37	chr14	74040086	74040086	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcattttgttttgtttcttCccaagaacctgggccctttc	7	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74040086	T	T	74040086	1	4	85	0	1	0	0	0	0	0	0	0	152	870	30	4		4	ACOT2	14	74040086	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	549195	74040086	33309454	770	89137											
ACOT2	10965	broad.mit.edu	37	chr14	74040352	74040352	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtctcttcttaaatggtCtgggttttcacagaagttag	10	7	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74040352	T	T	74040352	1	4	85	0	1	0	0	0	0	0	0	0	152	928	32	4		4	ACOT2	14	74040352	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	266	74040352	33309188	771	89138											
LTBP2	4053	broad.mit.edu	37	chr14	74999205	74999205	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagctgcccctggtattcacAcactccgcgtccttgcacag	8	16	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74999205	T	T	74999205	4	4	85	1	0	0	0	0	0	1	0	0	9161	157	6	5	3662	5	LTBP2	14	74999205	Nonsense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	958853	74999205	32350335	772	89139											
NGB	58157	broad.mit.edu	37	chr14	77734877	77734877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcaaggtactcctccaGtgaggacaggtcttccacat	11	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77734877	T	T	77734877	3	4	85	1	0	0	0	0	1	0	0	0	10487	1020	36	3	210	3	NGB	14	77734877	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2735672	77734877	29614663	773	89140											
KCNK13	56659	broad.mit.edu	37	chr14	90651009	90651009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaggaaaatggacagcGggtgctgcccgcaatgccag	14	11	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90651009	T	T	90651009	3	4	85	1	0	0	0	0	1	0	0	0	8131	1116	39	1	895	1	KCNK13	14	90651009	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	12916132	90651009	16698531	774	89141											
SLC24A4	123041	broad.mit.edu	37	chr14	92908474	92908475	+	Missense_Mutation	DNP	GG	TT	TT													gtggctggagccaccttcatGgctgcaggaagctcaacgcc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	92908475	TT	TT	92908474	3	4	85	1	0	0	0	0	1	0	0	0	14582	1348	47	2	402	2	SLC24A4	14	92908474	Missense_Mutation	DNP	GG	TCGA-17-Z056-01A-01W-0747-08	2257465	92908474	14441066	775	89142											
KIAA1409	57578	broad.mit.edu	37	chr14	94041498	94041498	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagagctggcaaatcaaaGaaaatcaagagtcagtgaac	9	7	3	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94041498	A	A	94041498	3	1	85	1	0	0	0	0	1	0	0	0	8300	942	33	4	1688	4	KIAA1409	14	94041498	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1133024	94041498	13308042	776	89143											
C14orf73	91828	broad.mit.edu	37	chr14	103571418	103571418	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaggagctcaggtagggctCgcccgctcctgtgcgggcgc	17	14	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103571418	A	A	103571418	1	1	85	0	1	0	0	0	0	0	0	0	1792	899	31	3		3	C14orf73	14	103571418	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	9529920	103571418	3778122	777	89144											
PPP1R13B	23368	broad.mit.edu	37	chr14	104204993	104204993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaagtaaatctgtccaCcccacactcctacgggcctc	8	15	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104204993	A	A	104204993	1	1	85	0	1	0	0	0	0	0	0	0	12458	522	18	3		3	PPP1R13B	14	104204993	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	633575	104204993	3144547	778	89145											
C15orf2	23742	broad.mit.edu	37	chr15	24922552	24922552	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcaagcctcccgtcacaaGggagtccccaatatctatgt	7	14	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24922552	C	C	24922552	3	2	85	1	0	0	0	0	1	0	0	0	1797	1000	35	4	1540	4	C15orf2	15	24922552	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08		24922552	77608840	779	89146											
OCA2	4948	broad.mit.edu	37	chr15	28234700	28234700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggccagagaaggcccgGttaccgcaggcgtggagccc	17	12	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28234700	T	T	28234700	1	4	85	0	1	0	0	0	0	0	0	0	10910	1276	44	3		3	OCA2	15	28234700	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3312148	28234700	74296692	780	89147											
HERC2	8924	broad.mit.edu	37	chr15	28544618	28544618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatttctccatctttaacCatttcattccacagaccaca	1	14	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28544618	A	A	28544618	3	1	85	1	0	0	0	0	1	0	0	0	7125	594	21	2	14751	2	HERC2	15	28544618	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	309918	28544618	73986774	781	89148											
TJP1	7082	broad.mit.edu	37	chr15	30053914	30053914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaatttgcctttagacCtttctatcaatgtctttgca	4	8	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30053914	A	A	30053914	3	1	85	1	0	0	0	0	1	0	0	0	16052	681	24	2	4582	2	TJP1	15	30053914	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1509296	30053914	72477478	782	89149											
RYR3	6263	broad.mit.edu	37	chr15	33954735	33954735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcccgggttcaggttctcCaccccttgctttgttgtgac	10	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33954735	A	A	33954735	2	1	85	1	0	0	0	0	0	0	0	1	13881	581	21	2		2	RYR3	15	33954735	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3900821	33954735	68576657	783	89150											
C15orf24	56851	broad.mit.edu	37	chr15	34382622	34382622	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatagggcagtctgacaaCctctgatgttttgatgtaat	11	6	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34382622	G	G	34382622	3	3	85	1	0	0	0	0	1	0	0	0	1799	507	18	4	349	4	C15orf24	15	34382622	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	427887	34382622	68148770	784	89151											
ACTC1	70	broad.mit.edu	37	chr15	35086895	35086895	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttacctggtgccgcgggcGgcccacgatggacgggaaga	17	11	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35086895	A	A	35086895	3	1	85	1	0	0	0	0	1	0	0	0	195	1116	39	4	1042	4	ACTC1	15	35086895	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	704273	35086895	67444497	785	89152											
AQR	9716	broad.mit.edu	37	chr15	35196688	35196688	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttgattctcctctaagaTtgggtctgggttcaggtcct	10	10	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35196688	A	A	35196688	3	1	85	1	0	0	0	0	1	0	0	0	837	1493	52	5	2675	5	AQR	15	35196688	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	109793	35196688	67334704	786	89153											
INO80	54617	broad.mit.edu	37	chr15	41272372	41272372	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaaagaccactggcaggtCaggactctagccctggtttg	11	12	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41272372	T	T	41272372	1	4	85	0	1	0	0	0	0	0	0	0	7816	841	29	4		4	INO80	15	41272372	3'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	6075684	41272372	61259020	787	89154											
DUOXA1	90527	broad.mit.edu	37	chr15	45412317	45412317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttacctgtggtcaatgtgatCcagaaggcaggcccatggtg	13	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45412317	A	A	45412317	3	1	85	1	0	0	0	0	1	0	0	0	4842	856	30	3	711	3	DUOXA1	15	45412317	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4139945	45412317	57119075	788	89155											
TPM1	7168	broad.mit.edu	37	chr15	63363240	63363240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgtacaaaccaccattGtgtccaaagcacagctattc	5	11	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63363240	T	T	63363240	1	4	85	0	1	0	0	0	0	0	0	0	16529	1392	48	3		3	TPM1	15	63363240	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	17950923	63363240	39168152	789	89156											
ZNF609	23060	broad.mit.edu	37	chr15	64885242	64885242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccacatgcagcctattcGctgcactaactgtgcccgat	9	15	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64885242	T	T	64885242	1	4	85	0	1	0	0	0	0	0	0	0	18162	1102	38	3		3	ZNF609	15	64885242	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1522002	64885242	37646150	790	89157											
UACA	55075	broad.mit.edu	37	chr15	70959204	70959204	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcagtaattccttctcAtcttttgcagatatttcctt	4	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70959204	T	T	70959204	3	4	85	1	0	0	0	0	1	0	0	0	16950	214	8	5	447	5	UACA	15	70959204	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	6073962	70959204	31572188	791	89158											
MYO9A	4649	broad.mit.edu	37	chr15	72151994	72151994	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccactcatctgtaaaactatCaaaaaggccttaatttattt	3	9	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72151994	G	G	72151994	1	3	85	0	1	0	0	0	0	0	0	0	10178	841	29	4		4	MYO9A	15	72151994	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1192790	72151994	30379398	792	89159											
STRA6	64220	broad.mit.edu	37	chr15	74488246	74488246	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcccatctcattgacagcTgttcctgttactctcatctc	5	15	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74488246	A	A	74488246	1	1	85	0	1	0	0	0	0	0	0	0	15440	1595	55	5		5	STRA6	15	74488246	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2336252	74488246	28043146	793	89160											
IL16	3603	broad.mit.edu	37	chr15	81585315	81585315	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgacagtgaccctcagaaGagtctggaagagagagagaa	14	6	2	7			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81585315	C	C	81585315	3	2	85	1	0	0	0	0	1	0	0	0	7703	933	33	4	1881	4	IL16	15	81585315	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7097069	81585315	20946077	794	89161											
CPEB1	64506	broad.mit.edu	37	chr15	83224596	83224596	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaatgaggcctcaggcctCacacatgctcaaggcacact	8	14	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83224596	A	A	83224596	1	1	85	0	1	0	0	0	0	0	0	0	3832	841	29	3		3	CPEB1	15	83224596	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1639281	83224596	19306796	795	89162											
TM6SF1	53346	broad.mit.edu	37	chr15	83791445	83791445	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacctgagatggggaggtatCctaaatattacttgtgttag	12	5	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83791445	A	A	83791445	1	1	85	0	1	0	0	0	0	0	0	0	16095	870	30	3		3	TM6SF1	15	83791445	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	566849	83791445	18739947	796	89163											
HDGFRP3	50810	broad.mit.edu	37	chr15	83808196	83808196	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcttctgtggctttgcttTagacctgtcagtgcaaaaag	10	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83808196	C	C	83808196	1	2	85	0	1	0	0	0	0	0	0	0	7088	1769	61	5		5	HDGFRP3	15	83808196	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	16751	83808196	18723196	797	89164											
NTRK3	4916	broad.mit.edu	37	chr15	88669651	88669651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacaatcacagaaaaccCaatttccttgaaaataatgt	4	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88669651	A	A	88669651	1	1	85	0	1	0	0	0	0	0	0	0	10803	609	21	2		2	NTRK3	15	88669651	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	4861455	88669651	13861741	798	89165											
DET1	55070	broad.mit.edu	37	chr15	89074105	89074105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccatgcctgtctgactgtCccgctgtacctcagggaaaa	11	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89074105	A	A	89074105	3	1	85	1	0	0	0	0	1	0	0	0	4490	855	30	3	836	3	DET1	15	89074105	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	404454	89074105	13457287	799	89166											
ACAN	176	broad.mit.edu	37	chr15	89400993	89400993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgggtctcctgatgtcaGtggggaaatacctggactct	12	9	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89400993	T	T	89400993	3	4	85	1	0	0	0	0	1	0	0	0	117	1029	36	3	5219	3	ACAN	15	89400993	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	326888	89400993	13130399	800	89167											
IFT140	9742	broad.mit.edu	37	chr16	1639764	1639764	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtggtcttgcccttctcatCcacatagtgcactgtccctg	8	14	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1639764	T	T	1639764	3	4	85	1	0	0	0	0	1	0	0	0	7626	855	30	4	3836	4	IFT140	16	1639764	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08		1639764	88714989	801	89168											
PGP	283871	broad.mit.edu	37	chr16	2264177	2264177	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaagcggaagccggttgTccatgttggtgcccacgagc	13	12	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2264177	C	C	2264177	3	2	85	1	0	0	0	0	1	0	0	0	11897	1667	58	5	371	5	PGP	16	2264177	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	624413	2264177	88090576	802	89169											
DNASE1	1773	broad.mit.edu	37	chr16	3706127	3706127	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccagacacctatcactaCgtggtcagtgagccactggg	11	13	2	2	rs140382618		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3706127	A	A	3706127	4	1	85	1	0	0	0	0	0	1	0	0	4700	547	19	3	271	3	DNASE1	16	3706127	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1441950	3706127	86648626	803	89170											
GP2	2813	broad.mit.edu	37	chr16	20326035	20326035	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtgcacctgtgaacaagAacagaaggggtgggtttcct	13	8	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20326035	C	C	20326035	1	2	85	0	1	0	0	0	0	0	0	0	6647	261	9	5		5	GP2	16	20326035	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	16619908	20326035	70028718	804	89171											
PDILT	204474	broad.mit.edu	37	chr16	20370859	20370859	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagctagcacttcctcttCtatcacttcattttgctcaa	3	14	6	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20370859	G	G	20370859	3	3	85	1	0	0	0	0	1	0	0	0	11768	922	32	4	221	4	PDILT	16	20370859	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	44824	20370859	69983894	805	89172											
ACSM1	116285	broad.mit.edu	37	chr16	20696552	20696552	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagccaccagccaccactcAggaactcgaggcagcatcaa	8	16	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20696552	G	G	20696552	2	3	85	1	0	0	0	0	0	0	0	1	182	175	7	5		5	ACSM1	16	20696552	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	325693	20696552	69658201	806	89173											
DNAH3	55567	broad.mit.edu	37	chr16	20996323	20996323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagggcactcagaagaccCcaaaacacccagaagaacaa	7	14	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20996323	A	A	20996323	1	1	85	0	1	0	0	0	0	0	0	0	4643	638	22	2		2	DNAH3	16	20996323	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	299771	20996323	69358430	807	89174											
ARHGAP17	55114	broad.mit.edu	37	chr16	24981726	24981726	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcggatgagccatgccatCaacgctcacagttcctctca	8	14	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24981726	T	T	24981726	1	4	85	0	1	0	0	0	0	0	0	0	869	841	29	4		4	ARHGAP17	16	24981726	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3985403	24981726	65373027	808	89175											
ITGAL	3683	broad.mit.edu	37	chr16	30500667	30500667	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggatgacacatttattggGaatgaaccattgacaccaga	9	8	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30500667	T	T	30500667	2	4	85	1	0	0	0	0	0	0	0	1	7956	1161	41	3		3	ITGAL	16	30500667	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5518941	30500667	59854086	809	89176											
PRSS36	146547	broad.mit.edu	37	chr16	31155149	31155149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagaccaggggcccccCagagtcaccctagtggcaga	11	16	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31155149	A	A	31155149	3	1	85	1	0	0	0	0	1	0	0	0	12731	594	21	2	1873	2	PRSS36	16	31155149	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	654482	31155149	59199604	810	89177											
ITGAX	3687	broad.mit.edu	37	chr16	31372657	31372657	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctgctttcccgggaccccGatagccatgtctgtcagctt	9	15	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31372657	T	T	31372657	1	4	85	0	1	0	0	0	0	0	0	0	7959	1073	37	3		3	ITGAX	16	31372657	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	217508	31372657	58982096	811	89178											
ITGAD	3681	broad.mit.edu	37	chr16	31422393	31422393	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catgacccaggctctgccctCcagatcggctcctacttcgg	9	17	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31422393	G	G	31422393	1	3	85	0	1	0	0	0	0	0	0	0	7954	870	30	4		4	ITGAD	16	31422393	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	49736	31422393	58932360	812	89179											
SLC5A2	6524	broad.mit.edu	37	chr16	31495935	31495935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaggaatgtgttgaggtGgctgatgaggtccaaggctg	18	5	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31495935	T	T	31495935	1	4	85	0	1	0	0	0	0	0	0	0	14779	1363	47	2		2	SLC5A2	16	31495935	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	73542	31495935	58858818	813	89180											
ABCC11	85320	broad.mit.edu	37	chr16	48226495	48226495	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaccttggtgaaaatccctGaggagcagacccccacacag	10	13	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48226495	T	T	48226495	4	4	85	1	0	0	0	0	0	1	0	0	51	1294	45	3	1550	3	ABCC11	16	48226495	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	16730560	48226495	42128258	814	89181											
CCL17	6361	broad.mit.edu	37	chr16	57448996	57448996	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctcctctccctgcagctcGagggaccaatgtgggccggg	14	15	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57448996	A	A	57448996	3	1	85	1	0	0	0	0	1	0	0	0	2916	1058	37	4	80	4	CCL17	16	57448996	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	9222501	57448996	32905757	815	89182											
NUTF2	10204	broad.mit.edu	37	chr16	67899176	67899176	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatggaccctaggggatcaAtttggatgttgggccagtgt	15	6	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67899176	G	G	67899176	1	3	85	0	1	0	0	0	0	0	0	0	10874	116	4	5		5	NUTF2	16	67899176	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	10450180	67899176	22455577	816	89183											
ZFP90	146198	broad.mit.edu	37	chr16	68598296	68598296	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgtggagaagcctttagtCgacgctcatcgcttactcaa	10	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68598296	A	A	68598296	2	1	85	1	0	0	0	0	0	0	0	1	17780	876	31	3		3	ZFP90	16	68598296	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	699120	68598296	21756457	817	89184											
WWP2	11060	broad.mit.edu	37	chr16	69970320	69970320	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggagggcggcgagagcatCcgggtcacagaggagaacaa	17	8	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69970320	T	T	69970320	2	4	85	1	0	0	0	0	0	0	0	1	17543	845	30	4		4	WWP2	16	69970320	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1372024	69970320	20384433	818	89185											
HYDIN	54768	broad.mit.edu	37	chr16	70908115	70908115	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagtcctaaattctcaggGaggtaaccaacctgttattt	8	9	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70908115	T	T	70908115	1	4	85	0	1	0	0	0	0	0	0	0	7537	1189	41	3		3	HYDIN	16	70908115	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	937795	70908115	19446638	819	89186											
HYDIN	54768	broad.mit.edu	37	chr16	70926178	70926178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccttttctccctggagCatggattaggtcatgtatcc	8	13	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70926178	A	A	70926178	1	1	85	0	1	0	0	0	0	0	0	0	7537	725	25	3		3	HYDIN	16	70926178	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	18063	70926178	19428575	820	89187											
ZNF23	7571	broad.mit.edu	37	chr16	71482972	71482972	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgaattaattttgcattaAcattgaacgctttcccacag	6	8	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71482972	T	T	71482972	3	4	85	1	0	0	0	0	1	0	0	0	17909	43	2	5	979	5	ZNF23	16	71482972	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	556794	71482972	18871781	821	89188											
COTL1	23406	broad.mit.edu	37	chr16	84600394	84600394	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagctgaggccggcggtcctCtcccccggggagcaggcaga	16	14	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84600394	A	A	84600394	1	1	85	0	1	0	0	0	0	0	0	0	3793	928	32	3		3	COTL1	16	84600394	3'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	13117422	84600394	5754359	822	89189											
CA5A	763	broad.mit.edu	37	chr16	87960443	87960443	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgccgcttcataggagaccCtgagtggcttcagctggggg	15	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87960443	T	T	87960443	3	4	85	1	0	0	0	0	1	0	0	0	2545	681	24	4	690	4	CA5A	16	87960443	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3360049	87960443	2394310	823	89190											
C16orf55	124045	broad.mit.edu	37	chr16	89735693	89735693	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctggatgttttttcctctaGagaaacctgatgtaaagcaa	8	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89735693	C	C	89735693	5	2	85	1	0	0	0	0	0	0	1	0	1834	956	33	4	218	4	C16orf55	16	89735693	Splice_Site	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1775250	89735693	619060	824	89191											
FANCA	2175	broad.mit.edu	37	chr16	89818612	89818612	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaaatcagaattttctgaGtggtcataactccttgagct	7	9	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89818612	A	A	89818612	2	1	85	1	0	0	0	0	0	0	0	1	5719	1020	36	4		4	FANCA	16	89818612	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	82919	89818612	536141	825	89192											
PRPF8	10594	broad.mit.edu	37	chr17	1584926	1584926	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgattagccaggcggtagaGagtcgacatcataggtagtg	14	7	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1584926	A	A	1584926	3	1	85	1	0	0	0	0	1	0	0	0	12681	942	33	4	6447	4	PRPF8	17	1584926	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08		1584926	79610284	826	89193											
OR1E1	8387	broad.mit.edu	37	chr17	3301516	3301516	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagagaaggacaagttgctGagaaacaaatacataggcgt	11	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3301516	T	T	3301516	2	4	85	1	0	0	0	0	0	0	0	1	11048	1277	45	3		3	OR1E1	17	3301516	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1716590	3301516	77893694	827	89194											
ATP2A3	489	broad.mit.edu	37	chr17	3845875	3845875	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccagggcgcgcaggggcCcaggccagccaggcaggccc	16	18	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3845875	A	A	3845875	1	1	85	0	1	0	0	0	0	0	0	0	1142	638	22	2		2	ATP2A3	17	3845875	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	544359	3845875	77349335	828	89195											
ZNF594	84622	broad.mit.edu	37	chr17	5085319	5085319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttttctaagctcctcatCcttgctgaaggttttctcac	5	13	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5085319	A	A	5085319	3	1	85	1	0	0	0	0	1	0	0	0	18151	855	30	3	194	3	ZNF594	17	5085319	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1239444	5085319	76109891	829	89196											
DHX33	56919	broad.mit.edu	37	chr17	5366747	5366747	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaataggcaagaaagcagctCactatgtaaaaggagtcttg	11	6	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5366747	A	A	5366747	1	1	85	0	1	0	0	0	0	0	0	0	4546	841	29	3		3	DHX33	17	5366747	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	281428	5366747	75828463	830	89197											
DERL2	51009	broad.mit.edu	37	chr17	5388539	5388539	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgatcaattccaactgctGaaatagaaaaagagcttctt	7	7	2	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5388539	A	A	5388539	1	1	85	0	1	0	0	0	0	0	0	0	4487	1305	45	4		4	DERL2	17	5388539	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	21792	5388539	75806671	831	89198											
SHBG	6462	broad.mit.edu	37	chr17	7536069	7536069	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctttcccacacactctgcaGaaggtggtgttgtcttctgg	10	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7536069	A	A	7536069	5	1	85	1	0	0	0	0	0	0	1	0	14382	956	33	4	878	4	SHBG	17	7536069	Splice_Site	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2147530	7536069	73659141	832	89199											
TP53	7157	broad.mit.edu	37	chr17	7577118	7577118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccaggacaggcacaaaCacgcacctcaaagctgttcc	7	16	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577118	A	A	7577118	3	1	85	1	0	0	0	0	1	0	0	0	16505	478	17	3	466	3	TP53	17	7577118	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	41049	7577118	73618092	833	89200											
ALOX15B	247	broad.mit.edu	37	chr17	7950631	7950631	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgatgagtctgtccaagatGacagagagctccaggcctgg	14	9	1	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7950631	A	A	7950631	3	1	85	1	0	0	0	0	1	0	0	0	539	1290	45	4	1555	4	ALOX15B	17	7950631	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	373513	7950631	73244579	834	89201											
PIK3R5	23533	broad.mit.edu	37	chr17	8792182	8792182	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggctggagtagctcctgttCcttgagcaggatttcctgca	12	10	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8792182	T	T	8792182	3	4	85	1	0	0	0	0	1	0	0	0	12017	864	30	4	1760	4	PIK3R5	17	8792182	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	841551	8792182	72403028	835	89202											
MYH1	4619	broad.mit.edu	37	chr17	10409183	10409183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcctttcctgcagatgCggatgccttccagcacaccg	11	14	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10409183	A	A	10409183	3	1	85	1	0	0	0	0	1	0	0	0	10123	768	27	3	3787	3	MYH1	17	10409183	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1617001	10409183	70786027	836	89203											
MYOCD	93649	broad.mit.edu	37	chr17	12666854	12666854	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccaaattccacaccaggcTttagcgccctcaccaccagc	6	19	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12666854	A	A	12666854	3	1	85	1	0	0	0	0	1	0	0	0	10181	1609	56	5	2920	5	MYOCD	17	12666854	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	2257671	12666854	68528356	837	89204											
TRPV2	51393	broad.mit.edu	37	chr17	16321065	16321065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctctgaggcggacagagGaaagctggattttgggagcg	18	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16321065	T	T	16321065	3	4	85	1	0	0	0	0	1	0	0	0	16721	1174	41	3	85	3	TRPV2	17	16321065	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3654211	16321065	64874145	838	89205											
ALDH3A1	218	broad.mit.edu	37	chr17	19644355	19644355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttaaggggccaggccccCcttgtgccttacagcctctc	11	15	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19644355	A	A	19644355	1	1	85	0	1	0	0	0	0	0	0	0	497	638	22	2		2	ALDH3A1	17	19644355	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3323290	19644355	61550855	839	89206											
KIAA0100	9703	broad.mit.edu	37	chr17	26960922	26960922	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctactcacagtgaaagtCatggtagaatttgagtgggg	12	6	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26960922	A	A	26960922	3	1	85	1	0	0	0	0	1	0	0	0	8224	826	29	3	3546	3	KIAA0100	17	26960922	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7316567	26960922	54234288	840	89207											
ACCN1	40	broad.mit.edu	37	chr17	31355401	31355401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccccacggtgggggcaGgtatgtgagctgcaagacag	15	11	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31355401	T	T	31355401	3	4	85	1	0	0	0	0	1	0	0	0	128	991	35	2	722	2	ACCN1	17	31355401	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4394479	31355401	49839809	841	89208											
NLE1	54475	broad.mit.edu	37	chr17	33463193	33463193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacacactcacccgcaCgaggttgtatcggctcagag	11	14	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33463193	A	A	33463193	3	1	85	1	0	0	0	0	1	0	0	0	10555	536	19	3	471	3	NLE1	17	33463193	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2107792	33463193	47732017	842	89209											
FBXO47	494188	broad.mit.edu	37	chr17	37113382	37113382	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataagataataataaaatatCtttactggaaatcaagattg	5	3	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37113382	G	G	37113382	1	3	85	0	1	0	0	0	0	0	0	0	5813	928	32	4		4	FBXO47	17	37113382	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3650189	37113382	44081828	843	89210											
CACNB1	782	broad.mit.edu	37	chr17	37333827	37333827	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagggctgggatgagtGgggcatggccaagggggttg	24	5	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37333827	A	A	37333827	1	1	85	0	1	0	0	0	0	0	0	0	2578	1363	47	4		4	CACNB1	17	37333827	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	220445	37333827	43861383	844	89211											
WNK4	65266	broad.mit.edu	37	chr17	40948532	40948532	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaactctctgagtggcagcaGcaccggctcccaggagcagc	13	14	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40948532	C	C	40948532	3	2	85	1	0	0	0	0	1	0	0	0	17507	971	34	4	3735	4	WNK4	17	40948532	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3614705	40948532	40246678	845	89212											
BRCA1	672	broad.mit.edu	37	chr17	41215514	41215514	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaggagaggtccttccctCtaaagccacagccctttaat	8	13	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41215514	T	T	41215514	1	4	85	0	1	0	0	0	0	0	0	0	1507	928	32	4		4	BRCA1	17	41215514	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	266982	41215514	39979696	846	89213											
BRCA1	672	broad.mit.edu	37	chr17	41215796	41215796	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttttggtaactcagactCagcatcagcaaaaaccttag	6	11	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41215796	T	T	41215796	1	4	85	0	1	0	0	0	0	0	0	0	1507	841	29	4		4	BRCA1	17	41215796	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	282	41215796	39979414	847	89214											
SLC4A1	6521	broad.mit.edu	37	chr17	42330780	42330780	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtaagcagggttctccccTgcctcctccaccccctcctt	8	19	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42330780	A	A	42330780	1	1	85	0	1	0	0	0	0	0	0	0	14764	1595	55	5		5	SLC4A1	17	42330780	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1114984	42330780	38864430	848	89215											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46054172	46054172	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcgactggggcatcttccCggaatcagattcaaaggtga	11	9	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46054172	T	T	46054172	3	4	85	1	0	0	0	0	1	0	0	0	3177	652	23	4	927	4	CDK5RAP3	17	46054172	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3723392	46054172	35141038	849	89216											
SKAP1	8631	broad.mit.edu	37	chr17	46259763	46259763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgacacttaccctttaaCaagaaacttatttgatccac	3	11	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46259763	A	A	46259763	3	1	85	1	0	0	0	0	1	0	0	0	14468	477	17	3	475	3	SKAP1	17	46259763	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	205591	46259763	34935447	850	89217											
TTLL6	284076	broad.mit.edu	37	chr17	46863392	46863392	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggctccccgcaccgccccGtcgttgcccagccctctgca	10	21	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46863392	A	A	46863392	1	1	85	0	1	0	0	0	0	0	0	0	16857	1160	40	4		4	TTLL6	17	46863392	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	603629	46863392	34331818	851	89218											
CACNA1G	8913	broad.mit.edu	37	chr17	48699064	48699064	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtctctgacgtcagagaTtgtgtctgaaccgtcctgct	10	11	4	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48699064	C	C	48699064	3	2	85	1	0	0	0	0	1	0	0	0	2570	1493	52	5	6374	5	CACNA1G	17	48699064	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1835672	48699064	32496146	852	89219											
UTP18	51096	broad.mit.edu	37	chr17	49350848	49350848	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggggatcctatctaactActtacctctgcagtttaatt	7	9	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49350848	T	T	49350848	1	4	85	0	1	0	0	0	0	0	0	0	17225	406	14	5		5	UTP18	17	49350848	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	651784	49350848	31844362	853	89220											
HLF	3131	broad.mit.edu	37	chr17	53392565	53392565	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctctagggtgttcatgaaTtaaaactcctgtgttgttcc	8	9	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53392565	A	A	53392565	1	1	85	0	1	0	0	0	0	0	0	0	7281	1508	52	5		5	HLF	17	53392565	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	4041717	53392565	27802645	854	89221											
HLF	3131	broad.mit.edu	37	chr17	53398040	53398040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggatgacaagtactggGcaaggcgcagaaagaacaac	13	8	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53398040	T	T	53398040	3	4	85	1	0	0	0	0	1	0	0	0	7281	1203	42	3	702	3	HLF	17	53398040	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5475	53398040	27797170	855	89222											
ANKFN1	162282	broad.mit.edu	37	chr17	54403505	54403505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttcctcttttattttgCattaagagtatcttcatgat	4	7	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54403505	A	A	54403505	1	1	85	0	1	0	0	0	0	0	0	0	625	725	25	3		3	ANKFN1	17	54403505	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1005465	54403505	26791705	856	89223											
MTMR4	9110	broad.mit.edu	37	chr17	56594070	56594070	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatctacccctgaccttctCtacaactcttattcttctcc	1	17	5	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56594070	A	A	56594070	1	1	85	0	1	0	0	0	0	0	0	0	10040	928	32	3		3	MTMR4	17	56594070	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2190565	56594070	24601140	857	89224											
TEX14	56155	broad.mit.edu	37	chr17	56634325	56634325	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaaggagcttacaaccAggacactcaaactcaggcca	9	11	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56634325	G	G	56634325	1	3	85	0	1	0	0	0	0	0	0	0	15900	203	7	5		5	TEX14	17	56634325	3'UTR	SNP	A	TCGA-17-Z056-01A-01W-0747-08	40255	56634325	24560885	858	89225											
TEX14	56155	broad.mit.edu	37	chr17	56659003	56659003	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttttcttgagcagtcgagGagtaaaaatattcaccgtct	9	7	3	1	rs142618829		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56659003	A	A	56659003	3	1	85	1	0	0	0	0	1	0	0	0	15900	1174	41	4	1271	4	TEX14	17	56659003	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	24678	56659003	24536207	859	89226											
TEX14	56155	broad.mit.edu	37	chr17	56694833	56694833	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggagttggacaaaggtgGgagatggggcccgatgattc	18	6	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56694833	C	C	56694833	1	2	85	0	1	0	0	0	0	0	0	0	15900	1247	43	4		4	TEX14	17	56694833	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	35830	56694833	24500377	860	89227											
TRIM37	4591	broad.mit.edu	37	chr17	57157048	57157048	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaggatgatcacccttattCttcaaagactgaatctcaaa	5	10	4	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57157048	T	T	57157048	1	4	85	0	1	0	0	0	0	0	0	0	16635	928	32	4		4	TRIM37	17	57157048	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	462215	57157048	24038162	861	89228											
RPS6KB1	6198	broad.mit.edu	37	chr17	57991942	57991942	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttataactaggaattaaggGagtatgcctgacatagtttg	10	5	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57991942	A	A	57991942	1	1	85	0	1	0	0	0	0	0	0	0	13767	1189	41	4		4	RPS6KB1	17	57991942	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	834894	57991942	23203268	862	89229											
CA4	762	broad.mit.edu	37	chr17	58235398	58235398	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggctccctgcagactttctCaagacccttccctccctttc	5	18	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58235398	T	T	58235398	1	4	85	0	1	0	0	0	0	0	0	0	2544	841	29	4		4	CA4	17	58235398	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	243456	58235398	22959812	863	89230											
BRIP1	83990	broad.mit.edu	37	chr17	59924603	59924603	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaaacacagaaccaaaatGaagtttaaggtgaactagaa	8	5	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59924603	A	A	59924603	1	1	85	0	1	0	0	0	0	0	0	0	1523	1305	45	4		4	BRIP1	17	59924603	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1689205	59924603	21270607	864	89231											
RGS9	8787	broad.mit.edu	37	chr17	63204048	63204048	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttcccactaggattcttaTgctcgctatttaaaatctcc	5	11	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63204048	A	A	63204048	4	1	85	1	0	0	0	0	0	1	0	0	13422	1471	51	5	1274	5	RGS9	17	63204048	Nonsense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3279445	63204048	17991162	865	89232											
KIF19	124602	broad.mit.edu	37	chr17	72338890	72338890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagactgtgggcgaggaccGcaatgcccctgtaatccccg	12	15	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72338890	T	T	72338890	1	4	85	0	1	0	0	0	0	0	0	0	8352	1102	38	3		3	KIF19	17	72338890	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	9134842	72338890	8856320	866	89233											
SLC25A19	60386	broad.mit.edu	37	chr17	73273565	73273565	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcaggttttggaggttctCtgaaccagagaagtgggatt	14	5	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73273565	G	G	73273565	5	3	85	1	0	0	0	0	0	0	1	0	14595	927	32	4	327	4	SLC25A19	17	73273565	Splice_Site	SNP	C	TCGA-17-Z056-01A-01W-0747-08	934675	73273565	7921645	867	89234											
WBP2	23558	broad.mit.edu	37	chr17	73851420	73851420	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactcaaaacgcaatgagCttgcgcccctcttcgccccg	9	16	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73851420	A	A	73851420	1	1	85	0	1	0	0	0	0	0	0	0	17386	812	28	3		3	WBP2	17	73851420	5'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	577855	73851420	7343790	868	89235											
SRP68	6730	broad.mit.edu	37	chr17	74057172	74057172	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaagttgagtataatgCcttgatccctgctctcacca	7	11	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74057172	T	T	74057172	1	4	85	0	1	0	0	0	0	0	0	0	15274	754	26	4		4	SRP68	17	74057172	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	205752	74057172	7138038	869	89236											
CYTH1	9267	broad.mit.edu	37	chr17	76688411	76688411	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactgaagggcaaatccaaCggtctcctcaaccatgtctg	8	12	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76688411	T	T	76688411	1	4	85	0	1	0	0	0	0	0	0	0	4236	551	19	4		4	CYTH1	17	76688411	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2631239	76688411	4506799	870	89237											
SLC26A11	284129	broad.mit.edu	37	chr17	78225181	78225181	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaaggggttccagtacttCtctaccctggaagaagcagg	12	10	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78225181	T	T	78225181	2	4	85	1	0	0	0	0	0	0	0	1	14630	912	32	4		4	SLC26A11	17	78225181	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1536770	78225181	2970029	871	89238											
RNF213	57674	broad.mit.edu	37	chr17	78351546	78351546	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcattagccaatgtgtgtCctgttctcttcacagcttgt	7	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78351546	T	T	78351546	1	4	85	0	1	0	0	0	0	0	0	0	13588	870	30	4		4	RNF213	17	78351546	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	126365	78351546	2843664	872	89239											
RPTOR	57521	broad.mit.edu	37	chr17	78795941	78795941	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttttttcttgcaacctctCttccattccctgctctcaga	3	16	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78795941	G	G	78795941	1	3	85	0	1	0	0	0	0	0	0	0	13776	928	32	4		4	RPTOR	17	78795941	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	444395	78795941	2399269	873	89240											
LRRC30	339291	broad.mit.edu	37	chr18	7231728	7231728	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgtgggctcgaatcgcCtggaaaacatcgctgagagc	13	11	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7231728	T	T	7231728	2	4	85	1	0	0	0	0	0	0	0	1	9072	680	24	4		4	LRRC30	18	7231728	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08		7231728	70845520	874	89241											
PTPRM	5797	broad.mit.edu	37	chr18	8248263	8248263	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagattggagttttaattctGtataatgcagtgattataag	10	2	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8248263	C	C	8248263	1	2	85	0	1	0	0	0	0	0	0	0	12914	1392	48	4		4	PTPRM	18	8248263	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1016535	8248263	69828985	875	89242											
PTPRM	5797	broad.mit.edu	37	chr18	8394505	8394505	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcagtgggacgttctgcGccatcagcatcgtatgtgag	14	11	2	1	rs142178302	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8394505	T	T	8394505	3	4	85	1	0	0	0	0	1	0	0	0	12914	1087	38	3	4366	3	PTPRM	18	8394505	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	146242	8394505	69682743	876	89243											
MC5R	4161	broad.mit.edu	37	chr18	13826533	13826533	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgggccccgttcttccttCatctcactttaatgctttct	6	14	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13826533	T	T	13826533	3	4	85	1	0	0	0	0	1	0	0	0	9460	826	29	4	771	4	MC5R	18	13826533	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5432028	13826533	64250715	877	89244											
MCART2	147407	broad.mit.edu	37	chr18	29340105	29340105	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaatgggcaccaagcctcGataatactctccaattccat	6	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29340105	A	A	29340105	4	1	85	1	0	0	0	0	0	1	0	0	9463	1066	37	4	377	4	MCART2	18	29340105	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	15513572	29340105	48737143	878	89245											
PIK3C3	5289	broad.mit.edu	37	chr18	39537431	39537431	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttttagtacttatgcatAtatgtacatgcttaaagcat	5	6	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39537431	T	T	39537431	1	4	85	0	1	0	0	0	0	0	0	0	12007	464	16	5		5	PIK3C3	18	39537431	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	10197326	39537431	38539817	879	89246											
LMAN1	3998	broad.mit.edu	37	chr18	57016532	57016532	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaaataaatttcaatcgatCcattttatgactactattca	3	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57016532	T	T	57016532	1	4	85	0	1	0	0	0	0	0	0	0	8910	870	30	4		4	LMAN1	18	57016532	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	17479101	57016532	21060716	880	89247											
RTTN	25914	broad.mit.edu	37	chr18	67718519	67718519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatttttcaaagcaagcacCctgatacctcttttatatgc	4	10	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67718519	A	A	67718519	1	1	85	0	1	0	0	0	0	0	0	0	13848	638	22	2		2	RTTN	18	67718519	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	10701987	67718519	10358729	881	89248											
CELF5	60680	broad.mit.edu	37	chr19	3273874	3273874	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctctctctgcagatggCgcggccaatccaggtgaagc	11	16	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3273874	T	T	3273874	3	4	85	1	0	0	0	0	1	0	0	0	3249	768	27	4	357	4	CELF5	19	3273874	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08		3273874	55855109	882	89249											
EEF2	1938	broad.mit.edu	37	chr19	3979238	3979238	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaccgagatcaagtctaggCgtctgcagagcctagctcag	12	11	4	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3979238	G	G	3979238	1	3	85	0	1	0	0	0	0	0	0	0	4969	783	27	4		4	EEF2	19	3979238	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	705364	3979238	55149745	883	89250											
MUC16	94025	broad.mit.edu	37	chr19	9011388	9011388	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgccatgggtcagctGgctcagctcccagtacagct	11	12	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9011388	A	A	9011388	4	1	85	1	0	0	0	0	0	1	0	0	10067	1357	47	4	4874	4	MUC16	19	9011388	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	5032150	9011388	50117595	884	89251											
MUC16	94025	broad.mit.edu	37	chr19	9015562	9015562	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcatcaccttggcatctAtgatgtagaagggactggat	10	8	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9015562	G	G	9015562	1	3	85	0	1	0	0	0	0	0	0	0	10067	464	16	5		5	MUC16	19	9015562	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	4174	9015562	50113421	885	89252											
COL5A3	50509	broad.mit.edu	37	chr19	10104574	10104574	+	Intron	DEL	T	-	-													cttcatcatcaacatcaagaTtttttttttgacagggtctc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10104574	-	-	10104574	6	5	85	0	1	1	0	1	0	0	0	0	3730	1508	52	0		0	COL5A3	19	10104574	Intron	DEL	T	TCGA-17-Z056-01A-01W-0747-08	1089012	10104574	49024409	886	89253											
RAD23A	5886	broad.mit.edu	37	chr19	13063662	13063662	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgcaggagaaagaagctataGagagggtaagaggcctggct	16	6	0	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13063662	A	A	13063662	3	1	85	1	0	0	0	0	1	0	0	0	13090	943	33	4	1003	4	RAD23A	19	13063662	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2959088	13063662	46065321	887	89254											
PDE4C	5143	broad.mit.edu	37	chr19	18327622	18327622	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggaagatatcgcagttctCtgcctgcagcagcttgaagc	11	11	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18327622	T	T	18327622	3	4	85	1	0	0	0	0	1	0	0	0	11735	922	32	4	740	4	PDE4C	19	18327622	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5263960	18327622	40801361	888	89255											
ZNF430	80264	broad.mit.edu	37	chr19	21239788	21239788	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacctaactcaacataaaaGaattcatattagggaaaatt	4	7	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21239788	C	C	21239788	3	2	85	1	0	0	0	0	1	0	0	0	18031	942	33	4	692	4	ZNF430	19	21239788	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2912166	21239788	37889195	889	89256											
ZNF43	7594	broad.mit.edu	37	chr19	22001953	22001953	+	Frame_Shift_Del	DEL	T	-	-													cattcctatataaattctgcTgtgcaatgtccaggcattgc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22001953	-	-	22001953	7	5	85	1	0	1	0	1	0	0	0	0	18030	1580	55	0	2367	0	ZNF43	19	22001953	Frame_Shift_Del	DEL	T	TCGA-17-Z056-01A-01W-0747-08	762165	22001953	37127030	890	89257											
WDR88	126248	broad.mit.edu	37	chr19	33628603	33628603	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcccatttaaaattctgagTgggcacgagcacgctgtgag	11	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33628603	A	A	33628603	3	1	85	1	0	0	0	0	1	0	0	0	17462	1693	59	5	303	5	WDR88	19	33628603	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	11626650	33628603	25500380	891	89258											
LSM14A	26065	broad.mit.edu	37	chr19	34706254	34706254	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattgactgatcaatgttttCcactcactttattttcatta	3	8	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34706254	T	T	34706254	1	4	85	0	1	0	0	0	0	0	0	0	9141	870	30	4		4	LSM14A	19	34706254	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1077651	34706254	24422729	892	89259											
LSM14A	26065	broad.mit.edu	37	chr19	34706595	34706595	+	Intron	SNP	C	G	G													ttggatctaaaagtcatattCtatgcttctcaacagggaga							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34706595	G	G	34706595	1	3	85	0	1	0	0	0	0	0	0	0	9141	928	32	4		4	LSM14A	19	34706595	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	341	34706595	24422388	893	89260	404	2									
LSM14A	26065	broad.mit.edu	37	chr19	34706605	34706605	+	Intron	SNP	C	A	A													aagtcatattctatgcttctCaacagggagaatattttaaa							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34706605	A	A	34706605	1	1	85	0	1	0	0	0	0	0	0	0	9141	841	29	3		3	LSM14A	19	34706605	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	10	34706605	24422378	894	89261	404	2									
MAG	4099	broad.mit.edu	37	chr19	35803053	35803054	+	Intron	DNP	GG	AA	AA													ggagaggaaggacattccagGgctgggttggacctggaggc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	35803054	AA	AA	35803053	1	1	85	0	1	0	0	0	0	0	0	0	9250	1247	43	4		4	MAG	19	35803053	Intron	DNP	GG	TCGA-17-Z056-01A-01W-0747-08	1096448	35803053	23325930	895	89262											
KRTDAP	388533	broad.mit.edu	37	chr19	35979410	35979410	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggaggaagagagacagcaGaagcaggtcagctccagggg	18	7	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35979410	T	T	35979410	1	4	85	0	1	0	0	0	0	0	0	0	8652	957	33	3		3	KRTDAP	19	35979410	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	176357	35979410	23149573	896	89263											
GAPDHS	26330	broad.mit.edu	37	chr19	36035883	36035883	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggccggcattgcgctcaatGacaatttcgtgaagctcatt	10	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36035883	A	A	36035883	3	1	85	1	0	0	0	0	1	0	0	0	6299	1290	45	4	1167	4	GAPDHS	19	36035883	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	56473	36035883	23093100	897	89264											
NPHS1	4868	broad.mit.edu	37	chr19	36340396	36340396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgtgatccccccacacCccccagtgcctgctccccat	5	23	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36340396	A	A	36340396	1	1	85	0	1	0	0	0	0	0	0	0	10677	638	22	2		2	NPHS1	19	36340396	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	304513	36340396	22788587	898	89265											
WDR62	284403	broad.mit.edu	37	chr19	36550949	36550949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtaggctgaggcctggGcccggggcaggggtggaacc	20	11	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36550949	T	T	36550949	1	4	85	0	1	0	0	0	0	0	0	0	17440	1218	42	3		3	WDR62	19	36550949	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	210553	36550949	22578034	899	89266											
ZNF420	147923	broad.mit.edu	37	chr19	37618734	37618734	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgaaaagctctatgaaTgtaaagaatgtaggaaggtc	12	4	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37618734	A	A	37618734	3	1	85	1	0	0	0	0	1	0	0	0	18024	1464	51	5	851	5	ZNF420	19	37618734	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1067785	37618734	21510249	900	89267											
ZNF585A	199704	broad.mit.edu	37	chr19	37646751	37646751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccatctaccggattcaCactcgcttcactcacctggg	6	17	5	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37646751	A	A	37646751	1	1	85	0	1	0	0	0	0	0	0	0	18144	493	17	3		3	ZNF585A	19	37646751	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	28017	37646751	21482232	901	89268											
CATSPERG	57828	broad.mit.edu	37	chr19	38845552	38845552	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctctcacctccgagaattCtaaccttgggccctcactca	5	17	5	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38845552	T	T	38845552	1	4	85	0	1	0	0	0	0	0	0	0	2718	928	32	4		4	CATSPERG	19	38845552	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1198801	38845552	20283431	902	89269											
RYR1	6261	broad.mit.edu	37	chr19	38976231	38976231	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcccacctctgctgcaggTgcatggacatcctggagctg	11	13	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38976231	C	C	38976231	3	2	85	1	0	0	0	0	1	0	0	0	13879	1710	59	5	5070	5	RYR1	19	38976231	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	130679	38976231	20152752	903	89270											
NCCRP1	342897	broad.mit.edu	37	chr19	39689847	39689847	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgtgtggaccttctggccGagggcctgtgggaggagctg	19	8	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39689847	A	A	39689847	3	1	85	1	0	0	0	0	1	0	0	0	10308	1059	37	4	504	4	NCCRP1	19	39689847	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	713616	39689847	19439136	904	89271											
LGALS13	29124	broad.mit.edu	37	chr19	40094607	40094607	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtactggggctgtgctctCagtagtgtgtgccccttctt	12	10	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40094607	G	G	40094607	1	3	85	0	1	0	0	0	0	0	0	0	8812	841	29	4		4	LGALS13	19	40094607	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	404760	40094607	19034376	905	89272											
PSG3	5671	broad.mit.edu	37	chr19	43233370	43233370	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgctatgctttgtagtaatcTgggggataaagagcttttgt	12	5	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43233370	A	A	43233370	3	1	85	1	0	0	0	0	1	0	0	0	12762	1580	55	5	146	5	PSG3	19	43233370	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	3138763	43233370	15895613	906	89273											
PSG7	5676	broad.mit.edu	37	chr19	43439716	43439716	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccactgtatgcaggcccataTttaattatttgaccgtctac	6	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43439716	A	A	43439716	3	1	85	1	0	0	0	0	1	0	0	0	12766	1490	52	5	1009	5	PSG7	19	43439716	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	206346	43439716	15689267	907	89274											
PSG6	5675	broad.mit.edu	37	chr19	43441114	43441114	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctaggagaccccatcCagtcactctgcttccttttc	5	17	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43441114	A	A	43441114	1	1	85	0	1	0	0	0	0	0	0	0	12765	609	21	2		2	PSG6	19	43441114	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1398	43441114	15687869	908	89275											
PSG6	5675	broad.mit.edu	37	chr19	43571247	43571247	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtgaaagcaagcctagttCtccgaggctctctttaactc	9	11	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43571247	A	A	43571247	1	1	85	0	1	0	0	0	0	0	0	0	12765	928	32	3		3	PSG6	19	43571247	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	130133	43571247	15557736	909	89276											
PSG6	5675	broad.mit.edu	37	chr19	43585123	43585123	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggatcctgcgtcctcccGggtgacattctggatcagca	12	12	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43585123	A	A	43585123	3	1	85	1	0	0	0	0	1	0	0	0	12765	1115	39	4		4	PSG6	19	43585123	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	13876	43585123	15543860	910	89277											
ZNF155	7711	broad.mit.edu	37	chr19	44496052	44496052	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggaagaaaagttttggatGatggggacagcaacccaaag	14	5	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44496052	A	A	44496052	3	1	85	1	0	0	0	0	1	0	0	0	17862	1290	45	4	211	4	ZNF155	19	44496052	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	910929	44496052	14632931	911	89278											
ZNF230	7773	broad.mit.edu	37	chr19	44513100	44513100	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccctctgtaatggtacatCaggcctcaggagtggctttg	11	11	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44513100	T	T	44513100	1	4	85	0	1	0	0	0	0	0	0	0	17910	841	29	4		4	ZNF230	19	44513100	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	17048	44513100	14615883	912	89279											
ZNF229	7772	broad.mit.edu	37	chr19	44933575	44933575	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccacactcgccacagctgtAgggcttttctccagggtgaa	10	13	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44933575	T	T	44933575	3	4	85	1	0	0	0	0	1	0	0	0	17908	420	15	5	1100	5	ZNF229	19	44933575	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	420475	44933575	14195408	913	89280											
FOSB	2354	broad.mit.edu	37	chr19	45976089	45976089	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accccccaacctgacggcttCtctctttacacacagtgaag	6	16	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45976089	T	T	45976089	3	4	85	1	0	0	0	0	1	0	0	0	6044	913	32	4	850	4	FOSB	19	45976089	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1042514	45976089	13152894	914	89281											
GPR4	2828	broad.mit.edu	37	chr19	46094980	46094980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagacgcccagctcgttgcGctgttgcacctggcggtagg	15	12	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46094980	T	T	46094980	3	4	85	1	0	0	0	0	1	0	0	0	6759	1087	38	3	947	3	GPR4	19	46094980	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	118891	46094980	13034003	915	89282											
DMPK	1760	broad.mit.edu	37	chr19	46280928	46280928	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcggccgtgctcaccttGtagtggacgatcttgccata	11	13	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46280928	A	A	46280928	2	1	85	1	0	0	0	0	0	0	0	1	4624	1372	48	4		4	DMPK	19	46280928	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	185948	46280928	12848055	916	89283											
HSD17B14	51171	broad.mit.edu	37	chr19	49316833	49316833	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggaagggagaggggggatCaaagcaatctgtctcgaacc	16	7	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49316833	T	T	49316833	1	4	85	0	1	0	0	0	0	0	0	0	7450	841	29	4		4	HSD17B14	19	49316833	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3035905	49316833	9812150	917	89284											
PNKP	11284	broad.mit.edu	37	chr19	50366041	50366041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccacaaatgtcccccCgcagcggtagcgggtccctg	10	18	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50366041	A	A	50366041	1	1	85	0	1	0	0	0	0	0	0	0	12242	667	23	1		1	PNKP	19	50366041	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1049208	50366041	8762942	918	89285											
KLK3	354	broad.mit.edu	37	chr19	51358290	51358290	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggttggggggatgcaggaGagggagccagccctgactgt	19	7	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51358290	T	T	51358290	1	4	85	0	1	0	0	0	0	0	0	0	8476	957	33	3		3	KLK3	19	51358290	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	992249	51358290	7770693	919	89286											
KLK2	3817	broad.mit.edu	37	chr19	51381581	51381581	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctcagtcatctgcctgcGcggttctgagagatggagtt	13	10	4	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51381581	A	A	51381581	1	1	85	0	1	0	0	0	0	0	0	0	8475	1102	38	4		4	KLK2	19	51381581	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	23291	51381581	7747402	920	89287											
ZNF613	79898	broad.mit.edu	37	chr19	52439459	52439459	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacttactggctatttccCagtaacaaaagaaaatgatc	5	10	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52439459	A	A	52439459	1	1	85	0	1	0	0	0	0	0	0	0	18165	609	21	2		2	ZNF613	19	52439459	5'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1057878	52439459	6689524	921	89288											
ZNF528	84436	broad.mit.edu	37	chr19	52919516	52919516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgaatgtaaagaatgtGgcaaagtcttcaggtacaag	10	5	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52919516	T	T	52919516	3	4	85	1	0	0	0	0	1	0	0	0	18096	1348	47	2	1425	2	ZNF528	19	52919516	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	480057	52919516	6209467	922	89289											
ZNF347	84671	broad.mit.edu	37	chr19	53644588	53644588	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgatgggtagttaggtttGaatgtgctctaaaggctttg	13	5	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53644588	C	C	53644588	4	2	85	1	0	0	0	0	0	1	0	0	17987	1294	45	4	1030	4	ZNF347	19	53644588	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	725072	53644588	5484395	923	89290											
ZNF347	84671	broad.mit.edu	37	chr19	53644975	53644975	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacacttgtaaggtttctctCcagtatgaattcctcgatgt	7	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53644975	G	G	53644975	3	3	85	1	0	0	0	0	1	0	0	0	17987	855	30	4	1417	4	ZNF347	19	53644975	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	387	53644975	5484008	924	89291											
ZNF677	342926	broad.mit.edu	37	chr19	53741285	53741285	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattacaaatgtttttgacaCaaggaggaagtggtgaaact	10	4	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53741285	G	G	53741285	3	3	85	1	0	0	0	0	1	0	0	0	18211	478	17	4	1063	4	ZNF677	19	53741285	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	96310	53741285	5387698	925	89292											
ZNF765	91661	broad.mit.edu	37	chr19	53911624	53911624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggtgagaaaccttacaaGtgtaatgagtgtggcaagac	12	6	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53911624	T	T	53911624	3	4	85	1	0	0	0	0	1	0	0	0	18268	1020	36	3	826	3	ZNF765	19	53911624	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	170339	53911624	5217359	926	89293											
NLRP12	91662	broad.mit.edu	37	chr19	54318050	54318050	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactgcccctttgatggtgtCattaatccaccccacgaatt	6	13	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54318050	T	T	54318050	1	4	85	0	1	0	0	0	0	0	0	0	10569	841	29	4		4	NLRP12	19	54318050	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	406426	54318050	4810933	927	89294											
PRKCG	5582	broad.mit.edu	37	chr19	54403829	54403829	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gactgctgaactcaacacttCttgcaattcctgccccacac	5	16	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54403829	T	T	54403829	1	4	85	0	1	0	0	0	0	0	0	0	12618	928	32	4		4	PRKCG	19	54403829	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	85779	54403829	4725154	928	89295											
PRKCG	5582	broad.mit.edu	37	chr19	54409934	54409934	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagccctcggagctgcttaActttccctcccccacgtctc	8	18	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54409934	T	T	54409934	1	4	85	0	1	0	0	0	0	0	0	0	12618	58	2	5		5	PRKCG	19	54409934	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	6105	54409934	4719049	929	89296											
CACNG7	59284	broad.mit.edu	37	chr19	54418584	54418585	+	Intron	DNP	CC	AA	AA													agtgtcccactggagattccCccctcacccctgtctctccc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	54418585	AA	AA	54418584	1	1	85	0	1	0	0	0	0	0	0	0	2588	638	22	2		2	CACNG7	19	54418584	Intron	DNP	CC	TCGA-17-Z056-01A-01W-0747-08	8650	54418584	4710399	930	89297											
TMC4	147798	broad.mit.edu	37	chr19	54675826	54675826	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtggcagcactgggcagctCgttcagcacagaagacagcg	15	11	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54675826	G	G	54675826	3	3	85	1	0	0	0	0	1	0	0	0	16110	893	31	4	2070	4	TMC4	19	54675826	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	257242	54675826	4453157	931	89298											
LAIR2	3904	broad.mit.edu	37	chr19	55019214	55019214	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggttcaaacattccgccTggagagggaggatagagcca	15	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55019214	A	A	55019214	3	1	85	1	0	0	0	0	1	0	0	0	8675	1580	55	5	189	5	LAIR2	19	55019214	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	343388	55019214	4109769	932	89299											
KIR2DL1	3802	broad.mit.edu	37	chr19	55290079	55290079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaggaaacccttcaaataGttggccttcacccactgaac	6	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55290079	T	T	55290079	3	4	85	1	0	0	0	0	1	0	0	0	8387	1029	36	3	698	3	KIR2DL1	19	55290079	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	270865	55290079	3838904	933	89300											
FCAR	2204	broad.mit.edu	37	chr19	55399394	55399394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtatggcaaacccttcCtctctgcagatcggggtctg	11	12	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55399394	T	T	55399394	3	4	85	1	0	0	0	0	1	0	0	0	5830	681	24	4	396	4	FCAR	19	55399394	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	109315	55399394	3729589	934	89301											
FCAR	2204	broad.mit.edu	37	chr19	55400877	55400877	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtggtgctggcgaagcatGagctcattgaggggatgctt	17	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55400877	T	T	55400877	1	4	85	0	1	0	0	0	0	0	0	0	5830	1305	45	3		3	FCAR	19	55400877	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1483	55400877	3728106	935	89302											
NLRP7	199713	broad.mit.edu	37	chr19	55452864	55452864	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcatctcttccaagatgttCacagtcgcattccttatcca	4	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55452864	T	T	55452864	2	4	85	1	0	0	0	0	0	0	0	1	10577	813	29	4		4	NLRP7	19	55452864	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	51987	55452864	3676119	936	89303											
NLRP2	55655	broad.mit.edu	37	chr19	55508738	55508738	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagacctctgctctgcccTcagctgcaaccagagcctcg	9	16	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55508738	A	A	55508738	3	1	85	1	0	0	0	0	1	0	0	0	10572	1551	54	5	2975	5	NLRP2	19	55508738	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	55874	55508738	3620245	937	89304											
TNNI3	7137	broad.mit.edu	37	chr19	55668917	55668917	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacccgggaggtcgccccCaactcccactgccttggggc	13	17	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55668917	T	T	55668917	1	4	85	0	1	0	0	0	0	0	0	0	16451	609	21	4		4	TNNI3	19	55668917	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	160179	55668917	3460066	938	89305											
PTPRH	5794	broad.mit.edu	37	chr19	55708441	55708441	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctcgcaaggactgtgaGctaagcccagttcaccactt	9	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55708441	A	A	55708441	1	1	85	0	1	0	0	0	0	0	0	0	12911	986	34	4		4	PTPRH	19	55708441	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	39524	55708441	3420542	939	89306											
NLRP11	204801	broad.mit.edu	37	chr19	56321474	56321474	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcacccttgatccacctcaAcacagccagatttataacaa	3	15	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56321474	G	G	56321474	2	3	85	1	0	0	0	0	0	0	0	1	10568	40	2	5		5	NLRP11	19	56321474	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	613033	56321474	2807509	940	89307											
NLRP5	126206	broad.mit.edu	37	chr19	56515383	56515383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtattatggagcatcgctgGcctgggctacgtccattagc	12	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56515383	T	T	56515383	3	4	85	1	0	0	0	0	1	0	0	0	10575	1203	42	3	370	3	NLRP5	19	56515383	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	193909	56515383	2613600	941	89308											
NLRP5	126206	broad.mit.edu	37	chr19	56549486	56549486	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctctgagcctggcaggaaAcaaggtgacagaccagggag	14	9	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56549486	T	T	56549486	3	4	85	1	0	0	0	0	1	0	0	0	10575	43	2	5	2749	5	NLRP5	19	56549486	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	34103	56549486	2579497	942	89309											
NLRP5	126206	broad.mit.edu	37	chr19	56552512	56552512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctttctaacatagcatgGtgtagctctcaaagcagaag	9	8	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56552512	T	T	56552512	1	4	85	0	1	0	0	0	0	0	0	0	10575	1276	44	3		3	NLRP5	19	56552512	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3026	56552512	2576471	943	89310											
ZSCAN4	201516	broad.mit.edu	37	chr19	58189211	58189211	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttgtgagagcctgttaagGaccacttttccaaaaagtct	9	9	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58189211	T	T	58189211	1	4	85	0	1	0	0	0	0	0	0	0	18366	1189	41	3		3	ZSCAN4	19	58189211	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1636699	58189211	939772	944	89311											
ZNF154	7710	broad.mit.edu	37	chr19	58213785	58213785	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgtgaagtctccaatggtCattgagactgtagcttttgc	11	7	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58213785	T	T	58213785	3	4	85	1	0	0	0	0	1	0	0	0	17861	826	29	4	785	4	ZNF154	19	58213785	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	24574	58213785	915198	945	89312											
ZNF417	147687	broad.mit.edu	37	chr19	58420019	58420019	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcataaggcctttctccagTgtgaattctcctgtgtttaa	7	9	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58420019	G	G	58420019	3	3	85	1	0	0	0	0	1	0	0	0	18021	1696	59	5	104	5	ZNF417	19	58420019	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	206234	58420019	708964	946	89313											
TMC2	117532	broad.mit.edu	37	chr20	2552784	2552784	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagatttcctctggttagGtgctaactgaaatcctgctt	8	9	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2552784	C	C	2552784	1	2	85	0	1	0	0	0	0	0	0	0	16108	1276	44	4		4	TMC2	20	2552784	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08		2552784	60472736	947	89314											
TMC2	117532	broad.mit.edu	37	chr20	2616682	2616682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagtttcatcctggacggTaaaaagagatcatgtttttg	12	5	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2616682	C	C	2616682	1	2	85	0	1	0	0	0	0	0	0	0	16108	1653	57	5		5	TMC2	20	2616682	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	63898	2616682	60408838	948	89315											
SEL1L2	80343	broad.mit.edu	37	chr20	13846071	13846071	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgcatactgaacaagAgaagaatctatatcaccatc	7	9	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13846071	T	T	13846071	2	4	85	1	0	0	0	0	0	0	0	1	14124	291	11	5		5	SEL1L2	20	13846071	Silent	SNP	A	TCGA-17-Z056-01A-01W-0747-08	11229389	13846071	49179449	949	89316											
OVOL2	58495	broad.mit.edu	37	chr20	18022289	18022289	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacttgaggtgacggttcaGcatgcgctgcagacggaagc	15	10	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18022289	C	C	18022289	3	2	85	1	0	0	0	0	1	0	0	0	11421	962	34	4	435	4	OVOL2	20	18022289	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4176218	18022289	45003231	950	89317											
C20orf12	55184	broad.mit.edu	37	chr20	18377240	18377240	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgtgggtgtgggactcaTtgccttaagtaacagtgtac	12	7	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18377240	C	C	18377240	1	2	85	0	1	0	0	0	0	0	0	0	2107	1508	52	5		5	C20orf12	20	18377240	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	354951	18377240	44648280	951	89318											
CRNKL1	51340	broad.mit.edu	37	chr20	20017996	20017996	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctggacctttcttctctTcttgactttctctggcatga	7	11	5	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20017996	G	G	20017996	3	3	85	1	0	0	0	0	1	0	0	0	3923	1792	62	5	204	5	CRNKL1	20	20017996	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1640756	20017996	43007524	952	89319											
XRN2	22803	broad.mit.edu	37	chr20	21330159	21330159	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacataatttttgaaatgaaAtaattctgtaaaagataaat	4	2	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21330159	G	G	21330159	1	3	85	0	1	0	0	0	0	0	0	0	17587	116	4	5		5	XRN2	20	21330159	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1312163	21330159	41695361	953	89320											
SSTR4	6754	broad.mit.edu	37	chr20	23016843	23016843	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcaagatgcgcgccgtGgccctgcgcgctggctggca	18	13	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23016843	T	T	23016843	2	4	85	1	0	0	0	0	0	0	0	1	15318	1335	47	2		2	SSTR4	20	23016843	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1686684	23016843	40008677	954	89321											
CST1	1469	broad.mit.edu	37	chr20	23731400	23731400	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcattgaggtctgcgttaTagatgccacccgggattatc	10	10	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23731400	G	G	23731400	3	3	85	1	0	0	0	0	1	0	0	0	4004	1406	49	5	333	5	CST1	20	23731400	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	714557	23731400	39294120	955	89322											
CST2	1470	broad.mit.edu	37	chr20	23804629	23804629	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggggtgggagtaggaggtGgtcagtgtgactccctggca	19	6	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23804629	A	A	23804629	1	1	85	0	1	0	0	0	0	0	0	0	4006	1363	47	4		4	CST2	20	23804629	3'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	73229	23804629	39220891	956	89323											
CST7	8530	broad.mit.edu	37	chr20	24939703	24939703	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagcagcaggcccttctctCagatgtgccctctcttcccc	7	17	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24939703	G	G	24939703	1	3	85	0	1	0	0	0	0	0	0	0	4011	841	29	4		4	CST7	20	24939703	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1135074	24939703	38085817	957	89324											
CST7	8530	broad.mit.edu	37	chr20	24940247	24940247	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagggaaagtctaagctctCaggtgtgcccttctctgttt	11	10	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24940247	T	T	24940247	1	4	85	0	1	0	0	0	0	0	0	0	4011	841	29	4		4	CST7	20	24940247	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	544	24940247	38085273	958	89325											
ZNF337	26152	broad.mit.edu	37	chr20	25655806	25655806	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaggcctctctcctgtgtgTattctttcatgcacagtgag	9	10	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25655806	C	C	25655806	3	2	85	1	0	0	0	0	1	0	0	0	17979	1628	57	5	141	5	ZNF337	20	25655806	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	715559	25655806	37369714	959	89326											
BPIL3	128859	broad.mit.edu	37	chr20	31624479	31624479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccgtggaggccaatgcCatgtgggtgtttgtggaccc	15	10	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31624479	A	A	31624479	1	1	85	0	1	0	0	0	0	0	0	0	1502	609	21	2		2	BPIL3	20	31624479	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5968673	31624479	31401041	960	89327											
C20orf114	92747	broad.mit.edu	37	chr20	31878733	31878733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccgagcttgcctggtgCtcacatggtcaggtgcctcc	12	15	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31878733	A	A	31878733	1	1	85	0	1	0	0	0	0	0	0	0	2104	812	28	3		3	C20orf114	20	31878733	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	254254	31878733	31146787	961	89328											
ZNF341	84905	broad.mit.edu	37	chr20	32332853	32332853	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatagtcttgcttttttttCattactttaccttcatctgt	3	9	4	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32332853	T	T	32332853	1	4	85	0	1	0	0	0	0	0	0	0	17983	841	29	4		4	ZNF341	20	32332853	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	454120	32332853	30692667	962	89329											
GSS	2937	broad.mit.edu	37	chr20	33539581	33539581	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatactccctcagccagggcCcggtccacggcctgccgtgc	11	18	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33539581	T	T	33539581	2	4	85	1	0	0	0	0	0	0	0	1	6895	610	22	4		4	GSS	20	33539581	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1206728	33539581	29485939	963	89330											
CEP250	11190	broad.mit.edu	37	chr20	34061702	34061702	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccttcttccagggagcgaGagctgctgcagaaggccagg	14	12	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34061702	T	T	34061702	4	4	85	1	0	0	0	0	0	1	0	0	3282	943	33	3	1438	3	CEP250	20	34061702	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	522121	34061702	28963818	964	89331											
NFS1	9054	broad.mit.edu	37	chr20	34261648	34261648	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcagttcatcatcaacGtctacttttagtcacaaacc	4	11	6	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34261648	A	A	34261648	1	1	85	0	1	0	0	0	0	0	0	0	10480	1160	40	4		4	NFS1	20	34261648	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	199946	34261648	28763872	965	89332											
LBP	3929	broad.mit.edu	37	chr20	36993307	36993307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttcctgaggaacacaaCaaaatggtctactttgccat	7	11	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36993307	A	A	36993307	3	1	85	1	0	0	0	0	1	0	0	0	8723	477	17	3	852	3	LBP	20	36993307	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2731659	36993307	26032213	966	89333											
PPP1R16B	26051	broad.mit.edu	37	chr20	37535561	37535561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccttgggcactctctcCacctcctaggctttctgagc	10	15	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37535561	A	A	37535561	1	1	85	0	1	0	0	0	0	0	0	0	12467	609	21	2		2	PPP1R16B	20	37535561	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	542254	37535561	25489959	967	89334											
KCNB1	3745	broad.mit.edu	37	chr20	48098496	48098496	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctccagtaggtcccagagTtttttcctcttctctgcgca	7	13	3	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48098496	A	A	48098496	3	1	85	1	0	0	0	0	1	0	0	0	8082	1722	60	5	2062	5	KCNB1	20	48098496	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	10562935	48098496	14927024	968	89335											
SALL4	57167	broad.mit.edu	37	chr20	50408104	50408104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggtgccagccctggggaCagggagctggtggcagaagg	20	8	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50408104	A	A	50408104	2	1	85	1	0	0	0	0	0	0	0	1	13924	465	17	3		3	SALL4	20	50408104	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2309608	50408104	12617416	969	89336											
GTPBP5	26164	broad.mit.edu	37	chr20	60772967	60772967	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtaccagggtttcagtggaGaagatggagggagtaaaaac	16	4	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60772967	A	A	60772967	3	1	85	1	0	0	0	0	1	0	0	0	6948	943	33	4	422	4	GTPBP5	20	60772967	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	10364863	60772967	2252553	970	89337											
GTPBP5	26164	broad.mit.edu	37	chr20	60773887	60773887	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttctccacctggagctcaaGacggtggcccacgccggaat	12	14	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60773887	A	A	60773887	2	1	85	1	0	0	0	0	0	0	0	1	6948	933	33	4		4	GTPBP5	20	60773887	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	920	60773887	2251633	971	89338											
NTSR1	4923	broad.mit.edu	37	chr20	61391394	61391394	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctatgacttctaccactaCttctacatggtgaccaacgc	5	14	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61391394	A	A	61391394	4	1	85	1	0	0	0	0	0	1	0	0	10805	576	20	3	1046	3	NTSR1	20	61391394	Nonsense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	617507	61391394	1634126	972	89339											
TPTE	7179	broad.mit.edu	37	chr21	10922099	10922099	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttctttcttttttttgaGacagggtcttgctgtgtcac	8	7	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10922099	T	T	10922099	1	4	85	0	1	0	0	0	0	0	0	0	16554	957	33	3		3	TPTE	21	10922099	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08		10922099	37207796	973	89340											
RNF160	26046	broad.mit.edu	37	chr21	30319883	30319883	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgacaaaaatggacaTagactttgaatggtatgcaa	8	5	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30319883	A	A	30319883	2	1	85	1	0	0	0	0	0	0	0	1	13566	1393	49	5		5	RNF160	21	30319883	Silent	SNP	T	TCGA-17-Z056-01A-01W-0747-08	19397784	30319883	17810012	974	89341											
KRTAP26-1	388818	broad.mit.edu	37	chr21	31692318	31692318	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggttctgagagatcctgaGttggagtttcccgagcagta	14	7	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31692318	C	C	31692318	3	2	85	1	0	0	0	0	1	0	0	0	8615	1020	36	4	600	4	KRTAP26-1	21	31692318	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1372435	31692318	16437577	975	89342											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31812752	31812752	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaccccagcaatgccatctAttctccaaatacctgccaac	3	17	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31812752	G	G	31812752	3	3	85	1	0	0	0	0	1	0	0	0	8597	449	16	5	109	5	KRTAP15-1	21	31812752	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	120434	31812752	16317143	976	89343											
KRTAP6-1	337966	broad.mit.edu	37	chr21	31986246	31986246	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggttgtggaggttgtcCttgggtaggaggaagtgtag	19	2	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31986246	A	A	31986246	1	1	85	0	1	0	0	0	0	0	0	0	8641	696	24	2		2	KRTAP6-1	21	31986246	5'Flank	SNP	C	TCGA-17-Z056-01A-01W-0747-08	173494	31986246	16143649	977	89344											
TIAM1	7074	broad.mit.edu	37	chr21	32499455	32499455	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catggacaatttcacacacgGcatttgcctctgcatctaaa	6	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32499455	C	C	32499455	3	2	85	1	0	0	0	0	1	0	0	0	16013	1203	42	4	726	4	TIAM1	21	32499455	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	513209	32499455	15630440	978	89345											
SYNJ1	8867	broad.mit.edu	37	chr21	34003562	34003562	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccctttcacaccaaaatCctcttcttcctcgaaggtta	3	15	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34003562	T	T	34003562	3	4	85	1	0	0	0	0	1	0	0	0	15571	855	30	4	260	4	SYNJ1	21	34003562	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1504107	34003562	14126333	979	89346											
DOPEY2	9980	broad.mit.edu	37	chr21	37605353	37605353	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatattgaaagtcattgcaGagaaaacagatttctatcag	9	5	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37605353	C	C	37605353	3	2	85	1	0	0	0	0	1	0	0	0	4748	943	33	4	2656	4	DOPEY2	21	37605353	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3601791	37605353	10524542	980	89347											
SIM2	6493	broad.mit.edu	37	chr21	38095399	38095399	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatgtgtcttggcgaaaAggaacgcgggcctgacctgc	14	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38095399	G	G	38095399	3	3	85	1	0	0	0	0	1	0	0	0	14437	63	3	5	529	5	SIM2	21	38095399	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	490046	38095399	10034496	981	89348											
DYRK1A	1859	broad.mit.edu	37	chr21	38884144	38884144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctagtttgttagtgtcatGgcttttgatggaagattaaa	11	3	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38884144	T	T	38884144	1	4	85	0	1	0	0	0	0	0	0	0	4894	1363	47	2		2	DYRK1A	21	38884144	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	788745	38884144	9245751	982	89349											
IGSF5	150084	broad.mit.edu	37	chr21	41142968	41142968	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgggagctcggtctcctgGtcagccattcaagctattat	10	12	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41142968	A	A	41142968	3	1	85	1	0	0	0	0	1	0	0	0	7672	1261	44	4	558	4	IGSF5	21	41142968	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2258824	41142968	6986927	983	89350											
GAB4	128954	broad.mit.edu	37	chr22	17469039	17469039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggccgtgactggctgagGaaatgtttcccaggaagcct	14	9	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17469039	T	T	17469039	3	4	85	1	0	0	0	0	1	0	0	0	6211	1174	41	3	1259	3	GAB4	22	17469039	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08		17469039	33835527	984	89351											
USP18	11274	broad.mit.edu	37	chr22	18642967	18642967	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtttacacaacattggacaGacctgctgccttaactcctt	7	12	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18642967	C	C	18642967	3	2	85	1	0	0	0	0	1	0	0	0	17175	933	33	4	192	4	USP18	22	18642967	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1173928	18642967	32661599	985	89352											
PRAME	23532	broad.mit.edu	37	chr22	22892305	22892305	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggatgtgggagaggaGgagtctacgcagattaatca	15	5	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22892305	A	A	22892305	3	1	85	1	0	0	0	0	1	0	0	0	12525	1000	35	4	741	4	PRAME	22	22892305	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4249338	22892305	28412261	986	89353											
RGL4	266747	broad.mit.edu	37	chr22	24040565	24040565	+	Intron	DEL	T	-	-													gggtgggagaaggctctccaTtttttttttttaacatggtc							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24040565	-	-	24040565	6	5	85	0	1	1	0	1	0	0	0	0	13387	1508	52	0		0	RGL4	22	24040565	Intron	DEL	T	TCGA-17-Z056-01A-01W-0747-08	1148260	24040565	27264001	987	89354											
SMARCB1	6598	broad.mit.edu	37	chr22	24145420	24145420	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgtgcagagagagaggctGaaaatttgcatacctagggc	14	7	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24145420	T	T	24145420	1	4	85	0	1	0	0	0	0	0	0	0	14888	1305	45	3		3	SMARCB1	22	24145420	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	104855	24145420	27159146	988	89355											
CABIN1	23523	broad.mit.edu	37	chr22	24432034	24432034	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttacgttactcctgggggcGaggggcattttcctgttaga	14	8	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24432034	A	A	24432034	1	1	85	0	1	0	0	0	0	0	0	0	2554	1073	37	4		4	CABIN1	22	24432034	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	286614	24432034	26872532	989	89356											
SYN3	8224	broad.mit.edu	37	chr22	33402347	33402347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacttaccagtctgtatGggcatcatcgatcaccaaca	6	13	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33402347	T	T	33402347	3	4	85	1	0	0	0	0	1	0	0	0	15561	1348	47	2	1493	2	SYN3	22	33402347	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	8970313	33402347	17902219	990	89357											
LARGE	9215	broad.mit.edu	37	chr22	34157235	34157235	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgtgattctagacaagtCacttcccatgactggaaata	8	9	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34157235	A	A	34157235	1	1	85	0	1	0	0	0	0	0	0	0	8699	841	29	3		3	LARGE	22	34157235	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	754888	34157235	17147331	991	89358											
APOL3	80833	broad.mit.edu	37	chr22	36537717	36537717	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctggcttcagcttctgctGatgatgtgtatgagtgctcc	12	9	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36537717	C	C	36537717	4	2	85	1	0	0	0	0	0	1	0	0	809	1294	45	4	472	4	APOL3	22	36537717	Nonsense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	2380482	36537717	14766849	992	89359											
TMPRSS6	164656	broad.mit.edu	37	chr22	37466384	37466384	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctggtggagccaggactaGaactcacatcacagtagcct	10	12	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37466384	A	A	37466384	1	1	85	0	1	0	0	0	0	0	0	0	16374	957	33	4		4	TMPRSS6	22	37466384	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	928667	37466384	13838182	993	89360											
RPS19BP1	91582	broad.mit.edu	37	chr22	39925559	39925559	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcggtgaacacggtgccctCagccttcttcttcttggtct	9	14	5	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39925559	T	T	39925559	3	4	85	1	0	0	0	0	1	0	0	0	13741	835	29	4	65	4	RPS19BP1	22	39925559	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2459175	39925559	11379007	994	89361											
ENTHD1	150350	broad.mit.edu	37	chr22	40283764	40283764	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgccataagtaatacaaGttccaaggtgagatggagga	12	6	0	1	rs146467769	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40283764	T	T	40283764	1	4	85	0	1	0	0	0	0	0	0	0	5179	1044	36	3		3	ENTHD1	22	40283764	5'UTR	SNP	G	TCGA-17-Z056-01A-01W-0747-08	358205	40283764	11020802	995	89362											
ZC3H7B	23264	broad.mit.edu	37	chr22	41742176	41742176	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaccatcgccaagctcctGaaggagcaccagggcatctt	9	15	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41742176	T	T	41742176	2	4	85	1	0	0	0	0	0	0	0	1	17699	1277	45	3		3	ZC3H7B	22	41742176	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1458412	41742176	9562390	996	89363											
PNPLA3	80339	broad.mit.edu	37	chr22	44322827	44322827	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccccagagcagactctgcAggtcctctcagatcttgtgc	10	14	3	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44322827	T	T	44322827	3	4	85	1	0	0	0	0	1	0	0	0	12261	188	7	5	206	5	PNPLA3	22	44322827	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	2580651	44322827	6981739	997	89364											
SAPS2	9701	broad.mit.edu	37	chr22	50878211	50878211	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagggacgtgggttccaGtgtgtgggcagctggcacct	19	8	0	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50878211	C	C	50878211	3	2	85	1	0	0	0	0	1	0	0	0	13949	1029	36	4	2195	4	SAPS2	22	50878211	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	6555384	50878211	426355	998	89365											
SHOX	6473	broad.mit.edu	37	chrX	591812	591812	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccagcctccaggacatcacGgagggcggcggccactgccc	13	17	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	591812	C	C	591812	2	2	85	1	0	0	0	0	0	0	0	1	14401	1103	39	4		4	SHOX	23	591812	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08		591812	154678748	999	89366											
NLGN4X	57502	broad.mit.edu	37	chrX	5827266	5827266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttttgctgcctggtcacCggtacttaaaaaccctacaa	7	13	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827266	A	A	5827266	3	1	85	1	0	0	0	0	1	0	0	0	10559	652	23	1	1822	1	NLGN4X	23	5827266	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5235454	5827266	149443294	1000	89367											
NLGN4X	57502	broad.mit.edu	37	chrX	5950772	5950772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactcgttatatcatctgcGtttttctttgtgttggctcc	7	9	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5950772	T	T	5950772	1	4	85	0	1	0	0	0	0	0	0	0	10559	1160	40	3		3	NLGN4X	23	5950772	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	123506	5950772	149319788	1001	89368											
ARHGAP6	395	broad.mit.edu	37	chrX	11204653	11204653	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttgctcatgactctttatCacacttgaaatactactgct	4	10	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11204653	G	G	11204653	1	3	85	0	1	0	0	0	0	0	0	0	889	841	29	4		4	ARHGAP6	23	11204653	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	5253881	11204653	144065907	1002	89369											
BMX	660	broad.mit.edu	37	chrX	15561295	15561295	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcaaccagtgaaaggggGatttccattcacatttgaac	11	8	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15561295	T	T	15561295	1	4	85	0	1	0	0	0	0	0	0	0	1479	1189	41	3		3	BMX	23	15561295	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	4356642	15561295	139709265	1003	89370											
CTPS2	56474	broad.mit.edu	37	chrX	16721054	16721054	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtggctgggtgccaacacCcagatataatctgaaaggca	11	9	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16721054	G	G	16721054	1	3	85	0	1	0	0	0	0	0	0	0	4057	638	22	4		4	CTPS2	23	16721054	5'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1159759	16721054	138549506	1004	89371											
SCML2	10389	broad.mit.edu	37	chrX	18322987	18322987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgtctgccaccagttgGggcatgtaccacctggtacc	11	13	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18322987	T	T	18322987	1	4	85	0	1	0	0	0	0	0	0	0	14023	1247	43	2		2	SCML2	23	18322987	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1601933	18322987	136947573	1005	89372											
PHKA2	5256	broad.mit.edu	37	chrX	18942367	18942367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctggcatagaagattccCgagataagaaaccaaactgc	8	9	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18942367	A	A	18942367	1	1	85	0	1	0	0	0	0	0	0	0	11939	667	23	1		1	PHKA2	23	18942367	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	619380	18942367	136328193	1006	89373											
MAP7D2	256714	broad.mit.edu	37	chrX	20030537	20030537	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcccatcaagggcatccaGatgaatgagtcccccagctg	9	13	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20030537	A	A	20030537	2	1	85	1	0	0	0	0	0	0	0	1	9360	933	33	4		4	MAP7D2	23	20030537	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1088170	20030537	135240023	1007	89374											
CNKSR2	22866	broad.mit.edu	37	chrX	21545047	21545047	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcaccatcagtacaccCaccaaaagagacagttctgc	6	15	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21545047	A	A	21545047	2	1	85	1	0	0	0	0	0	0	0	1	3639	581	21	2		2	CNKSR2	23	21545047	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1514510	21545047	133725513	1008	89375											
POLA1	5422	broad.mit.edu	37	chrX	24722559	24722559	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttgatgatgaccttgaaGatgatgcccttgatgctgat	10	6	0	8			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24722559	C	C	24722559	3	2	85	1	0	0	0	0	1	0	0	0	12282	942	33	4	315	4	POLA1	23	24722559	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3177512	24722559	130548001	1009	89376											
DMD	1756	broad.mit.edu	37	chrX	32490440	32490440	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaaaactttatcaaaaggGaaaaaagaatgagaatcact	6	5	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32490440	T	T	32490440	1	4	85	0	1	0	0	0	0	0	0	0	4620	1189	41	3		3	DMD	23	32490440	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7767881	32490440	122780120	1010	89377											
FAM47A	158724	broad.mit.edu	37	chrX	34148121	34148121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagtccatcccctcctggCaaacagcctttgaatgatgc	7	13	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34148121	A	A	34148121	3	1	85	1	0	0	0	0	1	0	0	0	5620	710	25	3	104	3	FAM47A	23	34148121	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1657681	34148121	121122439	1011	89378											
FAM47A	158724	broad.mit.edu	37	chrX	34149640	34149640	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatctccgacgagtgatGggaggccccgggcggatatg	17	10	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34149640	T	T	34149640	2	4	85	1	0	0	0	0	0	0	0	1	5620	1335	47	2		2	FAM47A	23	34149640	Silent	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1519	34149640	121120920	1012	89379											
CXorf22	170063	broad.mit.edu	37	chrX	35966554	35966554	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaccagccaagaattgTagatgaagaggcaatgtgag	13	6	0	6			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35966554	A	A	35966554	3	1	85	1	0	0	0	0	1	0	0	0	4135	1638	57	5	655	5	CXorf22	23	35966554	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	1816914	35966554	119304006	1013	89380											
CXorf22	170063	broad.mit.edu	37	chrX	36004195	36004195	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaccttagaatttgtgCtcttttggggttgctcttct	11	7	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36004195	T	T	36004195	1	4	85	0	1	0	0	0	0	0	0	0	4135	812	28	4		4	CXorf22	23	36004195	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	37641	36004195	119266365	1014	89381											
RPGR	6103	broad.mit.edu	37	chrX	38178260	38178260	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcacatggaaaagaaaaCgtcaatagactatagagtcc	8	8	2	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38178260	T	T	38178260	1	4	85	0	1	0	0	0	0	0	0	0	13659	551	19	4		4	RPGR	23	38178260	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	2174065	38178260	117092300	1015	89382											
RGN	9104	broad.mit.edu	37	chrX	46949396	46949396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacaggacagatctgtatgTatttttcattatttgtctca	7	6	3	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46949396	C	C	46949396	1	2	85	0	1	0	0	0	0	0	0	0	13390	1653	57	5		5	RGN	23	46949396	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	8771136	46949396	108321164	1016	89383											
WAS	7454	broad.mit.edu	37	chrX	48547495	48547495	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggattgggggtctaggactCtggggtgtcccgtctaagtc	16	8	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48547495	A	A	48547495	1	1	85	0	1	0	0	0	0	0	0	0	17378	928	32	3		3	WAS	23	48547495	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1598099	48547495	106723065	1017	89384											
MAGIX	79917	broad.mit.edu	37	chrX	49021500	49021500	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtgctctccttttgcctttCcaacacgactgcattgcact	7	14	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49021500	G	G	49021500	1	3	85	0	1	0	0	0	0	0	0	0	9285	870	30	4		4	MAGIX	23	49021500	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	474005	49021500	106249060	1018	89385											
CACNA1F	778	broad.mit.edu	37	chrX	49070182	49070182	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagtagggaggatgtgCgtgggagccacccacccacg	16	12	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49070182	T	T	49070182	1	4	85	0	1	0	0	0	0	0	0	0	2569	783	27	4		4	CACNA1F	23	49070182	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	48682	49070182	106200378	1019	89386											
XAGE3	170626	broad.mit.edu	37	chrX	52893798	52893798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcacataataatggataGcatacctccttctggcattt	6	9	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52893798	T	T	52893798	1	4	85	0	1	0	0	0	0	0	0	0	17547	986	34	3		3	XAGE3	23	52893798	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3823616	52893798	102376762	1020	89387											
WNK3	65267	broad.mit.edu	37	chrX	54319353	54319353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccttctgaacagttaatgGggaaacctggggttgtgaaa	13	6	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54319353	T	T	54319353	3	4	85	1	0	0	0	0	1	0	0	0	17506	1232	43	2	3457	2	WNK3	23	54319353	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1425555	54319353	100951207	1021	89388											
FAAH2	158584	broad.mit.edu	37	chrX	57419895	57419895	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccgtcactacaaacccttCtgggccaacaagctagagtg	8	14	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57419895	T	T	57419895	1	4	85	0	1	0	0	0	0	0	0	0	5400	928	32	4		4	FAAH2	23	57419895	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3100542	57419895	97850665	1022	89389											
ZC4H2	55906	broad.mit.edu	37	chrX	64139936	64139936	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcggagggagggtatgttgTagggactgggggcaggtagc	22	4	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64139936	C	C	64139936	1	2	85	0	1	0	0	0	0	0	0	0	17704	1653	57	5		5	ZC4H2	23	64139936	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	6720041	64139936	91130624	1023	89390											
PHKA1	5255	broad.mit.edu	37	chrX	71829592	71829592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattatcgtttctgtaacaCctcaggtttccacaaacatt	4	10	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71829592	A	A	71829592	1	1	85	0	1	0	0	0	0	0	0	0	11938	522	18	3		3	PHKA1	23	71829592	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	7689656	71829592	83440968	1024	89391											
PCDH11X	27328	broad.mit.edu	37	chrX	91237961	91237961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccgtcattcacattagtgTgaagttggaattcatcagtc	8	9	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91237961	A	A	91237961	1	1	85	0	1	0	0	0	0	0	0	0	11602	1711	59	5		5	PCDH11X	23	91237961	Intron	SNP	T	TCGA-17-Z056-01A-01W-0747-08	19408369	91237961	64032599	1025	89392											
HNRNPH2	3188	broad.mit.edu	37	chrX	100667151	100667151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaagtggtgaagcatttGttgaacttgaatctgaagag	12	5	1	5			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100667151	T	T	100667151	3	4	85	1	0	0	0	0	1	0	0	0	7334	1377	48	3	177	3	HNRNPH2	23	100667151	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	9429190	100667151	54603409	1026	89393											
GPRASP2	114928	broad.mit.edu	37	chrX	101970465	101970465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcctctaatgagtctgGgttctggtcagcagatgaga	15	7	4	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101970465	T	T	101970465	3	4	85	1	0	0	0	0	1	0	0	0	6789	1232	43	2	670	2	GPRASP2	23	101970465	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	1303314	101970465	53300095	1027	89394											
FAM199X	139231	broad.mit.edu	37	chrX	103434287	103434287	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagaaatttttattttgacAgaagcgatccaagcagcgga	9	6	0	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103434287	T	T	103434287	5	4	85	1	0	0	0	0	0	0	1	0	5577	202	7	5	1017	5	FAM199X	23	103434287	Splice_Site	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1463822	103434287	51836273	1028	89395											
ESX1	80712	broad.mit.edu	37	chrX	103495005	103495005	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacatgtgacctgggtggCagaggcgccatgggcggccc	18	12	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103495005	T	T	103495005	2	4	85	1	0	0	0	0	0	0	0	1	5305	697	25	4		4	ESX1	23	103495005	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	60718	103495005	51775555	1029	89396											
NRK	203447	broad.mit.edu	37	chrX	105152792	105152792	+	Frame_Shift_Del	DEL	G	-	-													gaccacttagagtcctgcatGgggaaccctctcagccaagg							TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105152792	-	-	105152792	7	5	85	1	0	1	0	1	0	0	0	0	10750	1348	47	0	1209	0	NRK	23	105152792	Frame_Shift_Del	DEL	G	TCGA-17-Z056-01A-01W-0747-08	1657787	105152792	50117768	1030	89397											
GUCY2F	2986	broad.mit.edu	37	chrX	108673705	108673705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtcccttccacataaaGggtttatacctataccagca	5	11	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108673705	T	T	108673705	1	4	85	0	1	0	0	0	0	0	0	0	6963	1015	35	2		2	GUCY2F	23	108673705	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	3520913	108673705	46596855	1031	89398											
CAPN6	827	broad.mit.edu	37	chrX	110494202	110494202	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcctcctgagcggttcatCaggggatcatcatccacagt	10	13	4	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110494202	A	A	110494202	2	1	85	1	0	0	0	0	0	0	0	1	2656	813	29	3		3	CAPN6	23	110494202	Silent	SNP	C	TCGA-17-Z056-01A-01W-0747-08	1820497	110494202	44776358	1032	89399											
WDR44	54521	broad.mit.edu	37	chrX	117578279	117578279	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacactatcgtgtttgtcttGgtatccaatttgtcagttat	7	7	2	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117578279	A	A	117578279	1	1	85	0	1	0	0	0	0	0	0	0	17423	1363	47	4		4	WDR44	23	117578279	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	7084077	117578279	37692281	1033	89400											
IGSF1	3547	broad.mit.edu	37	chrX	130415492	130415492	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctgctaactgcctttgagGaattgtgagaccaccccagg	10	12	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130415492	A	A	130415492	1	1	85	0	1	0	0	0	0	0	0	0	7666	1189	41	4		4	IGSF1	23	130415492	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	12837213	130415492	24855068	1034	89401											
FAM127A	8933	broad.mit.edu	37	chrX	134166362	134166362	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgacgcctcggtactgacCtctgcagagccgggtggagc	16	13	1	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134166362	A	A	134166362	1	1	85	0	1	0	0	0	0	0	0	0	5477	696	24	2		2	FAM127A	23	134166362	5'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3750870	134166362	21104198	1035	89402											
SLC9A6	10479	broad.mit.edu	37	chrX	135126719	135126719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaccggccacatccagcGccccaaggagatttatggga	11	13	0	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135126719	T	T	135126719	3	4	85	1	0	0	0	0	1	0	0	0	14832	1087	38	3	2004	3	SLC9A6	23	135126719	Missense_Mutation	SNP	G	TCGA-17-Z056-01A-01W-0747-08	960357	135126719	20143841	1036	89403											
FHL1	2273	broad.mit.edu	37	chrX	135279246	135279246	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggaagactggtctaggtgCtgctcctgaacttggtctct	13	9	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135279246	G	G	135279246	1	3	85	0	1	0	0	0	0	0	0	0	5935	812	28	4		4	FHL1	23	135279246	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	152527	135279246	19991314	1037	89404											
FHL1	2273	broad.mit.edu	37	chrX	135288843	135288843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggctgttaggatttccCagcatcactgcagccacctt	9	13	1	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135288843	A	A	135288843	1	1	85	0	1	0	0	0	0	0	0	0	5935	609	21	2		2	FHL1	23	135288843	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	9597	135288843	19981717	1038	89405											
MAP7D3	79649	broad.mit.edu	37	chrX	135307074	135307074	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaattcaaacatgaaaAcagattagaaaccaaacagt	4	6	1	3			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135307074	T	T	135307074	1	4	85	0	1	0	0	0	0	0	0	0	9361	58	2	5		5	MAP7D3	23	135307074	Intron	SNP	A	TCGA-17-Z056-01A-01W-0747-08	18231	135307074	19963486	1039	89406											
GPR112	139378	broad.mit.edu	37	chrX	135430793	135430793	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttccaggatcacacctaCgacctttctctctccaacag	4	17	3	0	rs146283448		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135430793	T	T	135430793	3	4	85	1	0	0	0	0	1	0	0	0	6694	536	19	4	4938	4	GPR112	23	135430793	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	123719	135430793	19839767	1040	89407											
GPR112	139378	broad.mit.edu	37	chrX	135455016	135455016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaggaggatgggttttaCttttaaaaggtaggatgctc	13	4	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135455016	A	A	135455016	1	1	85	0	1	0	0	0	0	0	0	0	6694	580	20	3		3	GPR112	23	135455016	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	24223	135455016	19815544	1041	89408											
MCF2	4168	broad.mit.edu	37	chrX	138670047	138670047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacacgcatccttgccattag	3	18	0	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138670047	A	A	138670047	1	1	85	0	1	0	0	0	0	0	0	0	9471	493	17	3		3	MCF2	23	138670047	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	3215031	138670047	16600513	1042	89409											
ATP11C	286410	broad.mit.edu	37	chrX	138880848	138880848	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattgttcaccatatatcttCtcggtattttttagcgtagc	6	8	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138880848	A	A	138880848	3	1	85	1	0	0	0	0	1	0	0	0	1125	912	32	3	2775	3	ATP11C	23	138880848	Missense_Mutation	SNP	C	TCGA-17-Z056-01A-01W-0747-08	210801	138880848	16389712	1043	89410											
ATP11C	286410	broad.mit.edu	37	chrX	138880885	138880885	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagctcctttcagcaagagaTtttcaggtcccaaagaccta	7	11	2	2			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138880885	A	A	138880885	3	1	85	1	0	0	0	0	1	0	0	0	1125	1493	52	5	2812	5	ATP11C	23	138880885	Missense_Mutation	SNP	T	TCGA-17-Z056-01A-01W-0747-08	37	138880885	16389675	1044	89411											
CDR1	1038	broad.mit.edu	37	chrX	139866649	139866649	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatctccagggcttccagCatctgctcgtcttccaacat	7	15	3	0			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139866649	A	A	139866649	1	1	85	0	1	0	0	0	0	0	0	0	3201	725	25	3		3	CDR1	23	139866649	5'UTR	SNP	C	TCGA-17-Z056-01A-01W-0747-08	985764	139866649	15403911	1045	89412											
FATE1	89885	broad.mit.edu	37	chrX	150890260	150890260	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggaagaggactggaggctGatagagtcactgtccaagaa	14	6	1	4			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150890260	T	T	150890260	1	4	85	0	1	0	0	0	0	0	0	0	5750	1305	45	3		3	FATE1	23	150890260	Intron	SNP	G	TCGA-17-Z056-01A-01W-0747-08	11023611	150890260	4380300	1046	89413											
MAGEA12	4111	broad.mit.edu	37	chrX	151900542	151900542	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgttcttcgttgctggAgccctcatcggattgactcc	9	13	2	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151900542	G	G	151900542	3	3	85	1	0	0	0	0	1	0	0	0	9254	304	11	5	689	5	MAGEA12	23	151900542	Missense_Mutation	SNP	A	TCGA-17-Z056-01A-01W-0747-08	1010282	151900542	3370018	1047	89414											
ATP2B3	492	broad.mit.edu	37	chrX	152823561	152823561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgagtgtgtgtgtcaCccccccagggcatcgcaggg	15	12	1	1			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152823561	A	A	152823561	1	1	85	0	1	0	0	0	0	0	0	0	1145	522	18	3		3	ATP2B3	23	152823561	Intron	SNP	C	TCGA-17-Z056-01A-01W-0747-08	923019	152823561	2446999	1048	89415											
PLEKHG5	57449	broad.mit.edu	37	chr1	6533066	6533066	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcatgcccatcaatgagctCccgccagctgtcctccagcc	7	19	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6533066	T	T	6533066	3	4	86	1	0	0	0	0	1	0	0	0	12168	864	30	4	2108	4	PLEKHG5	1	6533066	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08		6533066	242717555	1	89416											
PRAMEF1	65121	broad.mit.edu	37	chr1	12856217	12856217	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacactaaaatctactatGtgggtgcaaactatttttct	7	7	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12856217	A	A	12856217	1	1	86	0	1	0	0	0	0	0	0	0	12526	1392	48	4		4	PRAMEF1	1	12856217	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6323151	12856217	236394404	2	89417											
NBPF1	55672	broad.mit.edu	37	chr1	16891137	16891137	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaaatgataaggggaggaaGaaatggaaacctaaacatct	11	4	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16891137	T	T	16891137	1	4	86	0	1	0	0	0	0	0	0	0	10286	957	33	3		3	NBPF1	1	16891137	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4034920	16891137	232359484	3	89418											
EIF4G3	8672	broad.mit.edu	37	chr1	21191193	21191193	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttcatcatgaagccttgTcctctcctctggctgttgtg	9	12	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21191193	C	C	21191193	3	2	86	1	0	0	0	0	1	0	0	0	5080	1667	58	5	2207	5	EIF4G3	1	21191193	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	4300056	21191193	228059428	4	89419											
HSPG2	3339	broad.mit.edu	37	chr1	22191810	22191810	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatctcgtagctcctcctctCagggccctgcagcgctggct	11	16	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22191810	G	G	22191810	3	3	86	1	0	0	0	0	1	0	0	0	7500	835	29	4	9064	4	HSPG2	1	22191810	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1000617	22191810	227058811	5	89420											
AHDC1	27245	broad.mit.edu	37	chr1	27874733	27874734	+	Frame_Shift_Ins	INS	-	T	T													gtgggttgactggctgtggcINSttggggatgaacttggcttt							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27874734	T	T	27874733	7	5	86	1	0	1	1	0	0	0	0	0	412	796	28	0	921	0	AHDC1	1	27874733	Frame_Shift_Ins	INS	-	TCGA-17-Z057-01A-01W-0747-08	5682923	27874733	221375888	6	89421											
IFI6	2537	broad.mit.edu	37	chr1	27994970	27994970	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcgccctccagacccaccTcctccgacggccatgaaggt	8	20	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27994970	G	G	27994970	2	3	86	1	0	0	0	0	0	0	0	1	7589	1565	54	5		5	IFI6	1	27994970	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	120237	27994970	221255651	7	89422											
C1orf94	84970	broad.mit.edu	37	chr1	34667948	34667948	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagggggtctatttcacaGagtctttagactcctctgaa	11	9	4	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34667948	C	C	34667948	1	2	86	0	1	0	0	0	0	0	0	0	2093	957	33	4		4	C1orf94	1	34667948	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6672978	34667948	214582673	8	89423											
EPHA10	284656	broad.mit.edu	37	chr1	38185541	38185541	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctggggcctgagctgagAgggtcagaaggcatgcagct	17	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38185541	C	C	38185541	1	2	86	0	1	0	0	0	0	0	0	0	5208	319	11	5		5	EPHA10	1	38185541	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	3517593	38185541	211065080	9	89424											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43634544	43634544	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttcaggggaccaagtcaGaccacggcaatctcatctaa	9	12	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43634544	C	C	43634544	1	2	86	0	1	0	0	0	0	0	0	0	4925	957	33	4		4	EBNA1BP2	1	43634544	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5449003	43634544	205616077	10	89425											
TIE1	7075	broad.mit.edu	37	chr1	43766752	43766752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctctggagtatggtctggCgggtgccccctttcttgctc	13	13	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43766752	T	T	43766752	3	4	86	1	0	0	0	0	1	0	0	0	16016	759	27	4	12	4	TIE1	1	43766752	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	132208	43766752	205483869	11	89426											
FAAH	2166	broad.mit.edu	37	chr1	46876644	46876644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgaggctggaagtggcCcaggcaggggggcaaccttt	16	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46876644	A	A	46876644	1	1	86	0	1	0	0	0	0	0	0	0	5399	638	22	2		2	FAAH	1	46876644	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3109892	46876644	202373977	12	89427											
STIL	6491	broad.mit.edu	37	chr1	47735496	47735496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcttcatttgagagtcaGgctcttgatcctcacctgct	8	12	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47735496	T	T	47735496	3	4	86	1	0	0	0	0	1	0	0	0	15400	1000	35	2	1456	2	STIL	1	47735496	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	858852	47735496	201515125	13	89428											
ZCCHC11	23318	broad.mit.edu	37	chr1	52975360	52975360	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaaagtttgcatagataccGacaattggtatattctggtg	10	6	1	1	rs138715096		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52975360	A	A	52975360	3	1	86	1	0	0	0	0	1	0	0	0	17706	1057	37	4	4138	4	ZCCHC11	1	52975360	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5239864	52975360	196275261	14	89429											
PPAP2B	8613	broad.mit.edu	37	chr1	56990031	56990031	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagttgatctggctgaaatCagggttgcagacactcaaga	12	8	3	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56990031	T	T	56990031	3	4	86	1	0	0	0	0	1	0	0	0	12387	826	29	4	458	4	PPAP2B	1	56990031	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4014671	56990031	192260590	15	89430											
FGGY	55277	broad.mit.edu	37	chr1	60133106	60133106	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaggagagaaggtcacTttttggcttggcagcaaatg	14	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60133106	G	G	60133106	1	3	86	0	1	0	0	0	0	0	0	0	5928	1624	56	5		5	FGGY	1	60133106	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3143075	60133106	189117515	16	89431											
ATG4C	84938	broad.mit.edu	37	chr1	63299657	63299657	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatagaaatttgtttgctttGaataattaccacttgcctct	5	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63299657	C	C	63299657	1	2	86	0	1	0	0	0	0	0	0	0	1102	1305	45	4		4	ATG4C	1	63299657	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3166551	63299657	185950964	17	89432											
CACHD1	57685	broad.mit.edu	37	chr1	65142540	65142540	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgagtttggaatgtgggcGgtggtcgtcttaacctccag	14	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65142540	A	A	65142540	1	1	86	0	1	0	0	0	0	0	0	0	2563	1131	39	4		4	CACHD1	1	65142540	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1842883	65142540	184108081	18	89433											
LRRC7	57554	broad.mit.edu	37	chr1	70501974	70501975	+	Intron	DNP	CC	AG	AG													tgcatgtgcatgatgaatcgCcagttgtaaattatgataca							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	70501975	AG	AG	70501974	1	1	86	0	1	0	0	0	0	0	0	0	9107	754	26	3		3	LRRC7	1	70501974	Intron	DNP	CC	TCGA-17-Z057-01A-01W-0747-08	5359434	70501974	178748647	19	89434											
CTH	1491	broad.mit.edu	37	chr1	70895436	70895436	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtaatgaagcatattttCaaattgtttctcatttaaag	6	5	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70895436	G	G	70895436	1	3	86	0	1	0	0	0	0	0	0	0	4043	841	29	4		4	CTH	1	70895436	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	393462	70895436	178355185	20	89435											
NEGR1	257194	broad.mit.edu	37	chr1	72076539	72076539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggacatttcttctggatGctattagctactcatccctc	7	11	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72076539	T	T	72076539	1	4	86	0	1	0	0	0	0	0	0	0	10412	1334	46	3		3	NEGR1	1	72076539	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1181103	72076539	177174082	21	89436											
C1orf173	127254	broad.mit.edu	37	chr1	75108782	75108782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcaagctgatggtaacGctaagcatacaggaaagaat	9	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75108782	T	T	75108782	3	4	86	1	0	0	0	0	1	0	0	0	2034	1101	38	3	4392	3	C1orf173	1	75108782	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3032243	75108782	174141839	22	89437											
ELTD1	64123	broad.mit.edu	37	chr1	79403427	79403427	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatgcctcctaaccccacCcaaaactttgaaaatggctt	4	15	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79403427	T	T	79403427	1	4	86	0	1	0	0	0	0	0	0	0	5126	638	22	4		4	ELTD1	1	79403427	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4294645	79403427	169847194	23	89438											
TMED5	50999	broad.mit.edu	37	chr1	93645475	93645475	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgcctcgcgcgcctgcgcgGagcgggctggcttcctgaac	15	16	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93645475	C	C	93645475	1	2	86	0	1	0	0	0	0	0	0	0	16130	1189	41	4		4	TMED5	1	93645475	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	14242048	93645475	155605146	24	89439											
DNTTIP2	30836	broad.mit.edu	37	chr1	94342587	94342587	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgttattccattggcatCttcatccaaatccttacaat	3	11	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94342587	G	G	94342587	3	3	86	1	0	0	0	0	1	0	0	0	4722	913	32	4	1390	4	DNTTIP2	1	94342587	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	697112	94342587	154908034	25	89440											
PTBP2	58155	broad.mit.edu	37	chr1	97278224	97278224	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaagaattatgtttgttttGagctttgatattgtttgtta	8	1	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97278224	C	C	97278224	1	2	86	0	1	0	0	0	0	0	0	0	12832	1305	45	4		4	PTBP2	1	97278224	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2935637	97278224	151972397	26	89441											
LPPR5	163404	broad.mit.edu	37	chr1	99358709	99358709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggcttgggaacattagCtttgtaaaatatgtagtacc	11	5	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99358709	A	A	99358709	1	1	86	0	1	0	0	0	0	0	0	0	9015	812	28	3		3	LPPR5	1	99358709	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2080485	99358709	149891912	27	89442											
COL11A1	1301	broad.mit.edu	37	chr1	103468274	103468274	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagggcttatattcaaatatGagttattttatcactatttg	6	4	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103468274	T	T	103468274	1	4	86	0	1	0	0	0	0	0	0	0	3699	1305	45	3		3	COL11A1	1	103468274	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4109565	103468274	145782347	28	89443											
SLC6A17	388662	broad.mit.edu	37	chr1	110716431	110716431	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatggagcgtgaatggagcGtgaggggagctcctccacgg	18	8	0	2	rs146032103	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110716431	A	A	110716431	1	1	86	0	1	0	0	0	0	0	0	0	14794	1160	40	4		4	SLC6A17	1	110716431	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7248157	110716431	138534190	29	89444											
MAGI3	260425	broad.mit.edu	37	chr1	114092316	114092316	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcttaactaattaaacatCtacagatagtttgatggagt	6	5	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114092316	G	G	114092316	1	3	86	0	1	0	0	0	0	0	0	0	9284	928	32	4		4	MAGI3	1	114092316	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3375885	114092316	135158305	30	89445											
TRIM33	51592	broad.mit.edu	37	chr1	114945573	114945573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctagagaagctacttccCtggactggggcctggtttat	12	10	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114945573	A	A	114945573	1	1	86	0	1	0	0	0	0	0	0	0	16631	696	24	2		2	TRIM33	1	114945573	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	853257	114945573	134305048	31	89446											
SLC22A15	55356	broad.mit.edu	37	chr1	116534856	116534856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagcttcacctccatcGcctcggaggtaacaacaggc	10	15	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116534856	T	T	116534856	3	4	86	1	0	0	0	0	1	0	0	0	14559	1087	38	3	298	3	SLC22A15	1	116534856	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1589283	116534856	132715765	32	89447											
ITGA10	8515	broad.mit.edu	37	chr1	145533744	145533744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcccactgagtccacttGtctacagttaccttcccttt	5	15	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145533744	T	T	145533744	1	4	86	0	1	0	0	0	0	0	0	0	7943	1392	48	3		3	ITGA10	1	145533744	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	28998888	145533744	103716877	33	89448											
RPRD2	23248	broad.mit.edu	37	chr1	150444486	150444486	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacgcctcacgtaagccctCagatgataagcattttggcc	8	12	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150444486	G	G	150444486	4	3	86	1	0	0	0	0	0	1	0	0	13728	838	29	4	3104	4	RPRD2	1	150444486	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4910742	150444486	98806135	34	89449											
RPRD2	23248	broad.mit.edu	37	chr1	150445065	150445065	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagccagtggggccatcatCtgccccacctgtccctccta	9	17	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150445065	T	T	150445065	3	4	86	1	0	0	0	0	1	0	0	0	13728	913	32	4	3683	4	RPRD2	1	150445065	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	579	150445065	98805556	35	89450											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150532070	150532070	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagccaagcgttaccactgtCctacttcttatagacttgga	7	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150532070	T	T	150532070	1	4	86	0	1	0	0	0	0	0	0	0	277	870	30	4		4	ADAMTSL4	1	150532070	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	87005	150532070	98718551	36	89451											
SETDB1	9869	broad.mit.edu	37	chr1	150934369	150934370	+	Intron	INS	-	T	T													actgtccctggttgatgtaaINStcctgctcgtggtgttttcc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150934370	T	T	150934369	6	5	86	0	1	1	1	0	0	0	0	0	14251	116	4	0		0	SETDB1	1	150934369	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	402299	150934369	98316252	37	89452											
FLG	2312	broad.mit.edu	37	chr1	152282538	152282538	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagccgactcagaccgcctCtcagagtcttctgagtgtcc	10	14	4	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152282538	G	G	152282538	3	3	86	1	0	0	0	0	1	0	0	0	5979	912	32	4	7365	4	FLG	1	152282538	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1348169	152282538	96968083	38	89453											
NPR1	4881	broad.mit.edu	37	chr1	153655927	153655927	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgaactggcccctggggTaccctcctcctgacatcccc	8	18	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153655927	C	C	153655927	3	2	86	1	0	0	0	0	1	0	0	0	10689	1638	57	5	1361	5	NPR1	1	153655927	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1373389	153655927	95594694	39	89454											
CRTC2	200186	broad.mit.edu	37	chr1	153924925	153924925	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagaggatgaggatagctGaggagagaagggagaatatg	19	1	0	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153924925	A	A	153924925	1	1	86	0	1	0	0	0	0	0	0	0	3932	1305	45	4		4	CRTC2	1	153924925	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	268998	153924925	95325696	40	89455											
IL6R	3570	broad.mit.edu	37	chr1	154420690	154420690	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggtcagggctgcagcacctCgtgtttaggagtgtgggctg	18	8	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154420690	G	G	154420690	1	3	86	0	1	0	0	0	0	0	0	0	7772	899	31	4		4	IL6R	1	154420690	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	495765	154420690	94829931	41	89456											
NES	10763	broad.mit.edu	37	chr1	156640464	156640464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagcctctgactcctcCctaccctccctgggaggctc	8	20	2	1	rs140202258		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156640464	A	A	156640464	3	1	86	1	0	0	0	0	1	0	0	0	10432	622	22	2	1353	2	NES	1	156640464	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2219774	156640464	92610157	42	89457											
OR10Z1	128368	broad.mit.edu	37	chr1	158576655	158576655	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaatcctaccctctgtgccCagctggtcattacttccttc	6	15	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158576655	G	G	158576655	3	3	86	1	0	0	0	0	1	0	0	0	11017	595	21	4	429	4	OR10Z1	1	158576655	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1936191	158576655	90673966	43	89458											
SPTA1	6708	broad.mit.edu	37	chr1	158581118	158581118	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagagatggcttcgacccCgtgggtccatatattgctgc	12	11	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158581118	T	T	158581118	3	4	86	1	0	0	0	0	1	0	0	0	15234	652	23	4	67	4	SPTA1	1	158581118	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4463	158581118	90669503	44	89459											
SPTA1	6708	broad.mit.edu	37	chr1	158587387	158587387	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgagcaatgatctagttaaGaaccgaaggaaatcattatg	9	5	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158587387	A	A	158587387	1	1	86	0	1	0	0	0	0	0	0	0	15234	957	33	4		4	SPTA1	1	158587387	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6269	158587387	90663234	45	89460											
DARC	2532	broad.mit.edu	37	chr1	159175967	159175967	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctggatgaatatcctGtgggcctggtttattttctg	12	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159175967	T	T	159175967	2	4	86	1	0	0	0	0	0	0	0	1	4273	1364	48	3		3	DARC	1	159175967	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	588580	159175967	90074654	46	89461											
C1orf192	257177	broad.mit.edu	37	chr1	161337657	161337657	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcactgtagttagtggccAtgatcttgtgctgtttacac	11	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161337657	G	G	161337657	3	3	86	1	0	0	0	0	1	0	0	0	2044	217	8	5	551	5	C1orf192	1	161337657	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2161690	161337657	87912964	47	89462											
OLFML2B	25903	broad.mit.edu	37	chr1	161968140	161968140	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accgctgaaaaactcatcttCtgtgaaacaaacacaaggtt	6	10	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161968140	T	T	161968140	5	4	86	1	0	0	0	0	0	0	1	0	10953	927	32	4	1315	4	OLFML2B	1	161968140	Splice_Site	SNP	C	TCGA-17-Z057-01A-01W-0747-08	630483	161968140	87282481	48	89463											
UAP1	6675	broad.mit.edu	37	chr1	162535800	162535800	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaattacttttctcttttAggtttacaggtacatacatt	4	6	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162535800	T	T	162535800	5	4	86	1	0	0	0	0	0	0	1	0	16951	434	15	5		5	UAP1	1	162535800	Splice_Site	SNP	A	TCGA-17-Z057-01A-01W-0747-08	567660	162535800	86714821	49	89464											
LRRC52	440699	broad.mit.edu	37	chr1	165532800	165532800	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagggtggcccatcacccgGgtggggaacccactccgata	13	14	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165532800	A	A	165532800	2	1	86	1	0	0	0	0	0	0	0	1	9097	1219	43	4		4	LRRC52	1	165532800	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2997000	165532800	83717821	50	89465											
ILDR2	387597	broad.mit.edu	37	chr1	166888575	166888576	+	3'UTR	DNP	GA	TG	TG													gtctgatttctcattatccaGagaaatgttgacaacatcag							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	166888576	TG	TG	166888575	1	4	86	0	1	0	0	0	0	0	0	0	7780	957	33	3		3	ILDR2	1	166888575	3'UTR	DNP	GA	TCGA-17-Z057-01A-01W-0747-08	1355775	166888575	82362046	51	89466											
DUSP27	92235	broad.mit.edu	37	chr1	167083021	167083021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcctcagccattgcagCcaaacagatcatcaatgaag	6	14	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167083021	A	A	167083021	3	1	86	1	0	0	0	0	1	0	0	0	4864	739	26	3	191	3	DUSP27	1	167083021	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	194446	167083021	82167600	52	89467											
NME7	29922	broad.mit.edu	37	chr1	169272408	169272408	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagggtcttgactggtgatCtacatgaaaatccaatgctt	9	7	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169272408	G	G	169272408	3	3	86	1	0	0	0	0	1	0	0	0	10591	913	32	4	747	4	NME7	1	169272408	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2189387	169272408	79978213	53	89468											
FMO2	2327	broad.mit.edu	37	chr1	171174557	171174557	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacagtggaggagaacattGatgtcatcatttttgcaaca	10	6	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171174557	C	C	171174557	3	2	86	1	0	0	0	0	1	0	0	0	6013	1290	45	4	989	4	FMO2	1	171174557	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1902149	171174557	78076064	54	89469											
BAT2L2	23215	broad.mit.edu	37	chr1	171511055	171511055	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttccgggaataagacaccaGatttatctaatcagaactct	6	9	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171511055	T	T	171511055	3	4	86	1	0	0	0	0	1	0	0	0	1326	942	33	3	4502	3	BAT2L2	1	171511055	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	336498	171511055	77739566	55	89470											
DARS2	55157	broad.mit.edu	37	chr1	173799891	173799891	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcccgtcctgcaggacaaGagaatccagtaggtagtttc	10	10	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173799891	C	C	173799891	3	2	86	1	0	0	0	0	1	0	0	0	4275	943	33	4	402	4	DARS2	1	173799891	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2288836	173799891	75450730	56	89471											
RABGAP1L	9910	broad.mit.edu	37	chr1	174200661	174200661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgaaaggggcatttgaAcaattgtattagtctattct	9	4	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174200661	G	G	174200661	1	3	86	0	1	0	0	0	0	0	0	0	13073	58	2	5		5	RABGAP1L	1	174200661	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	400770	174200661	75049960	57	89472											
TNR	7143	broad.mit.edu	37	chr1	175355258	175355258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgggagccaggccgcagggCctgcactgagtattggctca	15	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175355258	A	A	175355258	3	1	86	1	0	0	0	0	1	0	0	0	16461	739	26	3	2453	3	TNR	1	175355258	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1154597	175355258	73895363	58	89473											
CACNA1E	777	broad.mit.edu	37	chr1	181701772	181701772	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttcgaggaggagcgcatCagccgtggggggtccctcaa	16	10	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181701772	T	T	181701772	2	4	86	1	0	0	0	0	0	0	0	1	2568	816	29	4		4	CACNA1E	1	181701772	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6346514	181701772	67548849	59	89474											
DHX9	1660	broad.mit.edu	37	chr1	182825599	182825599	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttggaaagcctgcctgacTtgggagacctggatttgctg	14	8	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182825599	G	G	182825599	1	3	86	0	1	0	0	0	0	0	0	0	4556	1624	56	5		5	DHX9	1	182825599	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1123827	182825599	66425022	60	89475											
LAMC1	3915	broad.mit.edu	37	chr1	183072671	183072671	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccttgtgtactgatgaattCagtgacatttctcccctcac	7	12	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183072671	T	T	183072671	2	4	86	1	0	0	0	0	0	0	0	1	8686	825	29	4		4	LAMC1	1	183072671	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	247072	183072671	66177950	61	89476											
FAM129A	116496	broad.mit.edu	37	chr1	184868578	184868578	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctatccctccagtcaccCctgtttcccagatatttgcc	4	16	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184868578	G	G	184868578	1	3	86	0	1	0	0	0	0	0	0	0	5482	638	22	4		4	FAM129A	1	184868578	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1795907	184868578	64382043	62	89477											
KCNT2	343450	broad.mit.edu	37	chr1	196288467	196288467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaatacaagatgtataaCacgagaacataagctctaca	6	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196288467	A	A	196288467	1	1	86	0	1	0	0	0	0	0	0	0	8162	493	17	3		3	KCNT2	1	196288467	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	11419889	196288467	52962154	63	89478											
CFH	3075	broad.mit.edu	37	chr1	196694299	196694299	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacacttagttcctgatcGcaagaaagaccagtataaag	8	8	0	3	rs138890387		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196694299	A	A	196694299	3	1	86	1	0	0	0	0	1	0	0	0	3313	1087	38	4	1809	4	CFH	1	196694299	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	405832	196694299	52556322	64	89479											
PTPRC	5788	broad.mit.edu	37	chr1	198666124	198666124	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtacaacttgtctttaaatTatttgcacagtttctaagta	5	6	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198666124	A	A	198666124	1	1	86	0	1	0	0	0	0	0	0	0	12905	1769	61	5		5	PTPRC	1	198666124	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1971825	198666124	50584497	65	89480											
NR5A2	2494	broad.mit.edu	37	chr1	200080375	200080375	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactgctggagtgagctcTtaatcctcgaccacatttac	8	11	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200080375	C	C	200080375	2	2	86	1	0	0	0	0	0	0	0	1	10731	1606	56	5		5	NR5A2	1	200080375	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1414251	200080375	49170246	66	89481											
KIF21B	23046	broad.mit.edu	37	chr1	200977926	200977926	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggcgctgactttgaactCaggtccagccacgccctgct	11	15	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200977926	G	G	200977926	3	3	86	1	0	0	0	0	1	0	0	0	8359	835	29	4	4584	4	KIF21B	1	200977926	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	897551	200977926	48272695	67	89482											
CHIT1	1118	broad.mit.edu	37	chr1	203192825	203192825	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggagtaagggccggccttgGaccagacaggaggccactct	16	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203192825	A	A	203192825	1	1	86	0	1	0	0	0	0	0	0	0	3377	1189	41	4		4	CHIT1	1	203192825	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2214899	203192825	46057796	68	89483											
ZC3H11A	9877	broad.mit.edu	37	chr1	203797542	203797542	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatggccttttcctacctcCgagcaaaagtgagatcagtt	9	10	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203797542	T	T	203797542	3	4	86	1	0	0	0	0	1	0	0	0	17686	652	23	4	300	4	ZC3H11A	1	203797542	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	604717	203797542	45453079	69	89484											
REN	5972	broad.mit.edu	37	chr1	204125889	204125889	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgctgggggtcgctgcctCccagcacaatctgtcctccc	10	16	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204125889	T	T	204125889	3	4	86	1	0	0	0	0	1	0	0	0	13332	855	30	4	502	4	REN	1	204125889	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	328347	204125889	45124732	70	89485											
FAM72A	729533	broad.mit.edu	37	chr1	206141297	206141297	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtcacttgaacccaggaGattcattacacagcaatgtg	10	9	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206141297	T	T	206141297	1	4	86	0	1	0	0	0	0	0	0	0	5665	957	33	3		3	FAM72A	1	206141297	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2015408	206141297	43109324	71	89486											
C4BPB	725	broad.mit.edu	37	chr1	207273064	207273064	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagagctaactgctgctcActggcttcagagtatatagc	10	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207273064	C	C	207273064	1	2	86	0	1	0	0	0	0	0	0	0	2273	174	6	5		5	C4BPB	1	207273064	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1131767	207273064	41977557	72	89487											
PLXNA2	5362	broad.mit.edu	37	chr1	208218447	208218447	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccggtgaggttgggaggctCgcagagaagctgggtctcag	18	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208218447	T	T	208218447	3	4	86	1	0	0	0	0	1	0	0	0	12215	893	31	4	2136	4	PLXNA2	1	208218447	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	945383	208218447	41032174	73	89488											
RPS6KC1	26750	broad.mit.edu	37	chr1	213349822	213349822	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggccttcagagtccttgGggtgattgacaaggtaattc	13	7	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	213349822	C	C	213349822	3	2	86	1	0	0	0	0	1	0	0	0	13769	1232	43	4	1061	4	RPS6KC1	1	213349822	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5131375	213349822	35900799	74	89489											
KCNK2	3776	broad.mit.edu	37	chr1	215256647	215256647	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgcagcccgtctctgaataAgaagtgagtacaatggcgtg	13	9	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215256647	G	G	215256647	1	3	86	0	1	0	0	0	0	0	0	0	8136	87	3	5		5	KCNK2	1	215256647	5'UTR	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1906825	215256647	33993974	75	89490											
USH2A	7399	broad.mit.edu	37	chr1	215799252	215799252	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattggctacatacttgctAtcaatagtatttgctatcaa	5	8	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215799252	G	G	215799252	1	3	86	0	1	0	0	0	0	0	0	0	17162	464	16	5		5	USH2A	1	215799252	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	542605	215799252	33451369	76	89491											
USH2A	7399	broad.mit.edu	37	chr1	216246218	216246218	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgcacatatgcatttgaaGataagtatttacctgctcct	7	8	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216246218	C	C	216246218	1	2	86	0	1	0	0	0	0	0	0	0	17162	957	33	4		4	USH2A	1	216246218	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	446966	216246218	33004403	77	89492											
USH2A	7399	broad.mit.edu	37	chr1	216373195	216373195	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgaccttcgtaggaaacAcatggctgaccaccagccaa	8	13	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216373195	T	T	216373195	4	4	86	1	0	0	0	0	0	1	0	0	17162	157	6	5	12261	5	USH2A	1	216373195	Nonsense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	126977	216373195	32877426	78	89493											
USH2A	7399	broad.mit.edu	37	chr1	216424444	216424444	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacactgtcctccaatctaGagaagatacaacattttgta	5	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216424444	C	C	216424444	1	2	86	0	1	0	0	0	0	0	0	0	17162	957	33	4		4	USH2A	1	216424444	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	51249	216424444	32826177	79	89494											
OBSCN	84033	broad.mit.edu	37	chr1	228402505	228402505	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acacagcccccaggaagcctCccctgcaaccccctgtggat	8	19	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228402505	T	T	228402505	3	4	86	1	0	0	0	0	1	0	0	0	10907	855	30	4	1548	4	OBSCN	1	228402505	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	11978061	228402505	20848116	80	89495											
C1orf124	83932	broad.mit.edu	37	chr1	231483582	231483582	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatgcctatttatttgtcActaataacgacaaagaccga	5	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231483582	G	G	231483582	3	3	86	1	0	0	0	0	1	0	0	0	2012	159	6	5	371	5	C1orf124	1	231483582	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	3081077	231483582	17767039	81	89496											
SIPA1L2	57568	broad.mit.edu	37	chr1	232539776	232539776	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctgtgcacccccaaccctCagggcgtgaataaccatgca	9	16	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232539776	T	T	232539776	1	4	86	0	1	0	0	0	0	0	0	0	14443	841	29	4		4	SIPA1L2	1	232539776	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1056194	232539776	16710845	82	89497											
SIPA1L2	57568	broad.mit.edu	37	chr1	232629163	232629163	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcttaaatgttgcaatcaTtaacattaaaaaaaaataaa	2	4	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232629163	G	G	232629163	1	3	86	0	1	0	0	0	0	0	0	0	14443	1508	52	5		5	SIPA1L2	1	232629163	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	89387	232629163	16621458	83	89498											
SLC35F3	148641	broad.mit.edu	37	chr1	234041493	234041493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctaccagccctgggcagCgagctgcaaaagtaagaccc	12	13	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234041493	A	A	234041493	3	1	86	1	0	0	0	0	1	0	0	0	14704	768	27	3	278	3	SLC35F3	1	234041493	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1412330	234041493	15209128	84	89499											
SCCPDH	51097	broad.mit.edu	37	chr1	246929456	246929456	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaggcgtaagtttggttttCttccaattagaagatctttt	8	5	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246929456	T	T	246929456	1	4	86	0	1	0	0	0	0	0	0	0	13997	928	32	4		4	SCCPDH	1	246929456	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	12887963	246929456	2321165	85	89500											
OR2C3	81472	broad.mit.edu	37	chr1	247695360	247695360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgctggtggtcagaccccCcagccaggaggccaaagcta	12	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695360	T	T	247695360	3	4	86	1	0	0	0	0	1	0	0	0	11087	623	22	4	512	4	OR2C3	1	247695360	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	765904	247695360	1555261	86	89501											
OR14C36	127066	broad.mit.edu	37	chr1	248512967	248512967	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaataagcaaataaaggtGgccatcaagaaaatcatgaa	8	5	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248512967	T	T	248512967	2	4	86	1	0	0	0	0	0	0	0	1	11040	1335	47	2		2	OR14C36	1	248512967	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	817607	248512967	737654	87	89502											
OR2T4	127074	broad.mit.edu	37	chr1	248525484	248525484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatgaccttccccttccGtggatcccgggagattcatc	8	16	1	2	rs151201153	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248525484	T	T	248525484	3	4	86	1	0	0	0	0	1	0	0	0	11121	1145	40	3	604	3	OR2T4	1	248525484	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	12517	248525484	725137	88	89503											
OR2T3	343173	broad.mit.edu	37	chr1	248637569	248637569	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagatgtcaccagggctctGaggagcatgatgcagtcaag	13	8	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248637569	A	A	248637569	2	1	86	1	0	0	0	0	0	0	0	1	11117	1277	45	4		4	OR2T3	1	248637569	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	112085	248637569	613052	89	89504											
SNTG2	54221	broad.mit.edu	37	chr2	1168845	1168845	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttgacagcggtttgcaTctgaacggaaactccagtac	9	11	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1168845	C	C	1168845	2	2	86	1	0	0	0	0	0	0	0	1	14989	1432	50	5		5	SNTG2	2	1168845	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08		1168845	242030528	90	89505											
LPIN1	23175	broad.mit.edu	37	chr2	11908141	11908141	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgatctgtgtgggggatttGagccagacggcctaggggtg	18	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11908141	C	C	11908141	1	2	86	0	1	0	0	0	0	0	0	0	9005	1305	45	4		4	LPIN1	2	11908141	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	10739296	11908141	231291232	91	89506											
NBAS	51594	broad.mit.edu	37	chr2	15358803	15358803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggtgatcctcccacctTggcctcccacaatgctggga	9	16	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15358803	A	A	15358803	1	1	86	0	1	0	0	0	0	0	0	0	10280	1827	63	5		5	NBAS	2	15358803	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3450662	15358803	227840570	92	89507											
DDX1	1653	broad.mit.edu	37	chr2	15735280	15735280	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactttcagagatgggtgtaAtgcctgagattgcacaagct	11	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15735280	T	T	15735280	3	4	86	1	0	0	0	0	1	0	0	0	4374	101	4	5	34	5	DDX1	2	15735280	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	376477	15735280	227464093	93	89508											
GEN1	348654	broad.mit.edu	37	chr2	17962451	17962451	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgatgggattagtcctgaaGagcatctactttctggcatt	10	8	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17962451	C	C	17962451	3	2	86	1	0	0	0	0	1	0	0	0	6399	943	33	4	2022	4	GEN1	2	17962451	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2227171	17962451	225236922	94	89509											
SDC1	6382	broad.mit.edu	37	chr2	20402600	20402600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgtttcggctcctccaagGagtagctgccttcgtccttc	9	14	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20402600	T	T	20402600	3	4	86	1	0	0	0	0	1	0	0	0	14064	1174	41	3	76	3	SDC1	2	20402600	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2440149	20402600	222796773	95	89510											
SDC1	6382	broad.mit.edu	37	chr2	20402913	20402913	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggccccctgatccactgggGactggttccggcggtcaggc	15	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20402913	C	C	20402913	3	2	86	1	0	0	0	0	1	0	0	0	14064	1174	41	4	242	4	SDC1	2	20402913	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	313	20402913	222796460	96	89511											
ITSN2	50618	broad.mit.edu	37	chr2	24475348	24475348	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaaagtcaaatctccaggttCcacacttgaatatggataaa	7	8	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24475348	G	G	24475348	3	3	86	1	0	0	0	0	1	0	0	0	7997	864	30	4	2222	4	ITSN2	2	24475348	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4072435	24475348	218724025	97	89512											
ADCY3	109	broad.mit.edu	37	chr2	25051072	25051072	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggacacacgttcaagagaAcagcaggtgctggtcacaga	13	9	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25051072	G	G	25051072	1	3	86	0	1	0	0	0	0	0	0	0	295	58	2	5		5	ADCY3	2	25051072	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	575724	25051072	218148301	98	89513											
ADCY3	109	broad.mit.edu	37	chr2	25065111	25065111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatcagagcccgcgccccGggccggcgtacctgacgttc	13	18	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25065111	A	A	25065111	1	1	86	0	1	0	0	0	0	0	0	0	295	1131	39	4		4	ADCY3	2	25065111	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	14039	25065111	218134262	99	89514											
C2orf70	339778	broad.mit.edu	37	chr2	26802085	26802085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgagctggaaagtgggcaCgtggggctgtgggtgggcac	20	7	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26802085	A	A	26802085	1	1	86	0	1	0	0	0	0	0	0	0	2212	551	19	3		3	C2orf70	2	26802085	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1736974	26802085	216397288	100	89515											
C2orf18	54978	broad.mit.edu	37	chr2	26999280	26999280	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccagatcatcgttgccatCcagatggtgctagaggagaa	12	10	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26999280	G	G	26999280	3	3	86	1	0	0	0	0	1	0	0	0	2180	845	30	4	594	4	C2orf18	2	26999280	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	197195	26999280	216200093	101	89516											
MPV17	4358	broad.mit.edu	37	chr2	27535576	27535576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacatcttcttcagtgcatCcactttggtggtgccaggga	10	11	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27535576	A	A	27535576	3	1	86	1	0	0	0	0	1	0	0	0	9839	855	30	3	300	3	MPV17	2	27535576	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	536296	27535576	215663797	102	89517											
CRIM1	51232	broad.mit.edu	37	chr2	36668829	36668829	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtcagagaaccagagtgatCatccactggtacataagcgc	10	10	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36668829	T	T	36668829	1	4	86	0	1	0	0	0	0	0	0	0	3905	841	29	4		4	CRIM1	2	36668829	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	9133253	36668829	206530544	103	89518											
THUMPD2	80745	broad.mit.edu	37	chr2	39964054	39964054	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgcaccagttttttcttCaggattcaagcactttttaa	6	8	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39964054	T	T	39964054	3	4	86	1	0	0	0	0	1	0	0	0	16006	835	29	4	182	4	THUMPD2	2	39964054	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3295225	39964054	203235319	104	89519											
SLC8A1	6546	broad.mit.edu	37	chr2	40402265	40402265	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actatttgaccttgacaaaaTgaggtcaatggccctaaaca	7	9	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40402265	C	C	40402265	1	2	86	0	1	0	0	0	0	0	0	0	14820	1479	51	5		5	SLC8A1	2	40402265	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	438211	40402265	202797108	105	89520											
SRBD1	55133	broad.mit.edu	37	chr2	45812906	45812906	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttcaatattagttctctcaGataaaacctgcaaattaaag	5	7	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45812906	C	C	45812906	3	2	86	1	0	0	0	0	1	0	0	0	15251	942	33	4	2399	4	SRBD1	2	45812906	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5410641	45812906	197386467	106	89521											
FSHR	2492	broad.mit.edu	37	chr2	49190745	49190745	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgcagagatcagcaaaGgccaggttgcacataaggaa	11	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49190745	A	A	49190745	2	1	86	1	0	0	0	0	0	0	0	1	6133	987	35	4		4	FSHR	2	49190745	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3377839	49190745	194008628	107	89522											
FSHR	2492	broad.mit.edu	37	chr2	49244706	49244706	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccttttcaattctactgTaaaagaagaaaaaacatgct	6	7	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49244706	C	C	49244706	1	2	86	0	1	0	0	0	0	0	0	0	6133	1653	57	5		5	FSHR	2	49244706	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	53961	49244706	193954667	108	89523											
EHBP1	23301	broad.mit.edu	37	chr2	63091846	63091846	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtattcatgtgatttaattCatctgctattattttataga	6	4	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63091846	T	T	63091846	1	4	86	0	1	0	0	0	0	0	0	0	5015	841	29	4		4	EHBP1	2	63091846	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	13847140	63091846	180107527	109	89524											
EHBP1	23301	broad.mit.edu	37	chr2	63215246	63215246	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatatttttattatctcatCaataataataataattttgt	1	3	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63215246	G	G	63215246	1	3	86	0	1	0	0	0	0	0	0	0	5015	841	29	4		4	EHBP1	2	63215246	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	123400	63215246	179984127	110	89525											
CEP68	23177	broad.mit.edu	37	chr2	65309887	65309887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatttgcccaccaaccctgCtgtaacagttggccactact	6	14	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65309887	A	A	65309887	1	1	86	0	1	0	0	0	0	0	0	0	3288	812	28	3		3	CEP68	2	65309887	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2094641	65309887	177889486	111	89526											
ACTR2	10097	broad.mit.edu	37	chr2	65492395	65492395	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgacaaccaccagagggagCaagacgtcttccaaaacaaa	8	11	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65492395	G	G	65492395	1	3	86	0	1	0	0	0	0	0	0	0	211	725	25	4		4	ACTR2	2	65492395	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	182508	65492395	177706978	112	89527											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71360522	71360522	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaggacagggaaaaccaaGagaaaagtccatagtagatg	11	6	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71360522	C	C	71360522	3	2	86	1	0	0	0	0	1	0	0	0	9819	942	33	4	590	4	MPHOSPH10	2	71360522	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5868127	71360522	171838851	113	89528											
DCTN1	1639	broad.mit.edu	37	chr2	74590293	74590293	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggatgccaaggatgccttCatctgggctccctgtggatg	14	10	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74590293	G	G	74590293	3	3	86	1	0	0	0	0	1	0	0	0	4339	826	29	4	495	4	DCTN1	2	74590293	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3229771	74590293	168609080	114	89529											
RTKN	6242	broad.mit.edu	37	chr2	74657732	74657732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccagcagctggggtagctGtgcttcttaccagagatgca	12	10	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74657732	T	T	74657732	1	4	86	0	1	0	0	0	0	0	0	0	13833	1392	48	3		3	RTKN	2	74657732	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	67439	74657732	168541641	115	89530											
MRPL53	116540	broad.mit.edu	37	chr2	74699368	74699368	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgccgcgcataatcaggcGatgcccgtctcctggggaag	14	13	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74699368	A	A	74699368	3	1	86	1	0	0	0	0	1	0	0	0	9911	1058	37	4	125	4	MRPL53	2	74699368	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	41636	74699368	168500005	116	89531											
CCDC142	84865	broad.mit.edu	37	chr2	74710343	74710343	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctgtggtctgaacgtttCgagtaggattttatgcagag	12	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74710343	T	T	74710343	1	4	86	0	1	0	0	0	0	0	0	0	2802	899	31	4		4	CCDC142	2	74710343	5'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	10975	74710343	168489030	117	89532											
DQX1	165545	broad.mit.edu	37	chr2	74746519	74746519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactatacctcatggcatttAccatagccccttgtacctca	4	14	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74746519	G	G	74746519	1	3	86	0	1	0	0	0	0	0	0	0	4791	406	14	5		5	DQX1	2	74746519	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	36176	74746519	168452854	118	89533											
LRRTM1	347730	broad.mit.edu	37	chr2	80529897	80529897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtccaggacgtcctcgcCctgtgcgtactccgggctgg	15	15	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80529897	A	A	80529897	3	1	86	1	0	0	0	0	1	0	0	0	9126	623	22	2	524	2	LRRTM1	2	80529897	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5783378	80529897	162669476	119	89534											
ELMOD3	84173	broad.mit.edu	37	chr2	85595895	85595895	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtaactgtacgaatgctGctgtctccccatagcccctc	8	15	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85595895	A	A	85595895	1	1	86	0	1	0	0	0	0	0	0	0	5112	1334	46	4		4	ELMOD3	2	85595895	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5065998	85595895	157603478	120	89535											
PROM2	150696	broad.mit.edu	37	chr2	95954337	95954337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatccggaaacgcctcaGgtgaggggctgccagggctg	15	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95954337	T	T	95954337	3	4	86	1	0	0	0	0	1	0	0	0	12662	1014	35	2	2527	2	PROM2	2	95954337	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	10358442	95954337	147245036	121	89536											
VWA3B	200403	broad.mit.edu	37	chr2	98928739	98928739	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cattgccacacctccacctcGagcagccctgccctgtactc	6	20	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98928739	C	C	98928739	3	2	86	1	0	0	0	0	1	0	0	0	17368	1058	37	4	3918	4	VWA3B	2	98928739	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2974402	98928739	144270634	122	89537											
INPP4A	3631	broad.mit.edu	37	chr2	99156082	99156082	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatggcagagagcgtgctCtccctgcacgtgccccggca	13	15	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99156082	G	G	99156082	2	3	86	1	0	0	0	0	0	0	0	1	7822	900	32	4		4	INPP4A	2	99156082	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	227343	99156082	144043291	123	89538											
NPAS2	4862	broad.mit.edu	37	chr2	101584684	101584684	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctttacaataactcttggGgaaaagatcattttcatatt	5	6	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101584684	A	A	101584684	1	1	86	0	1	0	0	0	0	0	0	0	10658	1247	43	4		4	NPAS2	2	101584684	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2428602	101584684	141614689	124	89539											
TBC1D8	11138	broad.mit.edu	37	chr2	101646186	101646186	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtgctctgccagctcTgggagatgacccttgatgag	12	10	3	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101646186	A	A	101646186	2	1	86	1	0	0	0	0	0	0	0	1	15747	1567	55	5		5	TBC1D8	2	101646186	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	61502	101646186	141553187	125	89540											
POU3F3	5455	broad.mit.edu	37	chr2	105472929	105472929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggacacgccgacgtcggacGacctggagcagttcgccaag	14	13	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105472929	T	T	105472929	3	4	86	1	0	0	0	0	1	0	0	0	12372	1058	37	3	963	3	POU3F3	2	105472929	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3826743	105472929	137726444	126	89541											
POU3F3	5455	broad.mit.edu	37	chr2	105473259	105473259	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttcctcaagtgccccaagCcctccgcgcaggagatcacc	8	18	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105473259	G	G	105473259	3	3	86	1	0	0	0	0	1	0	0	0	12372	739	26	4	1293	4	POU3F3	2	105473259	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	330	105473259	137726114	127	89542											
UXS1	80146	broad.mit.edu	37	chr2	106774618	106774618	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggaaaaagtcaaacatctCatttgaatattttctctgtc	5	7	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106774618	G	G	106774618	1	3	86	0	1	0	0	0	0	0	0	0	17236	841	29	4		4	UXS1	2	106774618	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1301359	106774618	136424755	128	89543											
SEPT10	151011	broad.mit.edu	37	chr2	110342589	110342589	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatttttaaaacaatgtgtGgaaggaaaggtatggattac	10	2	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110342589	A	A	110342589	1	1	86	0	1	0	0	0	0	0	0	0	14173	1363	47	4		4	SEPT10	2	110342589	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3567971	110342589	132856784	129	89544											
DDX18	8886	broad.mit.edu	37	chr2	118572407	118572407	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagatcgagaagcggaacctCaaattgcggcagcggaacct	12	10	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118572407	G	G	118572407	2	3	86	1	0	0	0	0	0	0	0	1	4378	813	29	4		4	DDX18	2	118572407	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8229818	118572407	124626966	130	89545											
DDX18	8886	broad.mit.edu	37	chr2	118582056	118582056	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatcatatctcccatttctGatatctctacctagaatatt	2	11	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118582056	C	C	118582056	1	2	86	0	1	0	0	0	0	0	0	0	4378	1305	45	4		4	DDX18	2	118582056	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	9649	118582056	124617317	131	89546											
CCDC93	54520	broad.mit.edu	37	chr2	118706863	118706863	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcagcaaagtcactttcatCaaagcaaaaataagcacatg	5	9	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118706863	G	G	118706863	1	3	86	0	1	0	0	0	0	0	0	0	2900	841	29	4		4	CCDC93	2	118706863	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	124807	118706863	124492510	132	89547											
PCDP1	200373	broad.mit.edu	37	chr2	120397378	120397378	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattattcccggaataatgCactggaaaagcttccagtcc	7	11	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120397378	A	A	120397378	3	1	86	1	0	0	0	0	1	0	0	0	11666	710	25	3	1347	3	PCDP1	2	120397378	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1690515	120397378	122801995	133	89548											
NCKAP5	344148	broad.mit.edu	37	chr2	133540011	133540011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaactcacagcatcagtcGcggttgcagaggcatctgga	12	11	3	2	rs112873686		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133540011	T	T	133540011	3	4	86	1	0	0	0	0	1	0	0	0	10318	1087	38	3	1384	3	NCKAP5	2	133540011	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	13142633	133540011	109659362	134	89549											
LRP1B	53353	broad.mit.edu	37	chr2	141267620	141267620	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtcagcagcacaggttaTggcacctgaaacacaaaaac	8	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141267620	C	C	141267620	3	2	86	1	0	0	0	0	1	0	0	0	9042	1464	51	5	5684	5	LRP1B	2	141267620	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	7727609	141267620	101931753	135	89550											
ARHGAP15	55843	broad.mit.edu	37	chr2	143913137	143913137	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcacaggagctgtgcaaatGagaatcaaaaatgccaacag	11	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143913137	C	C	143913137	3	2	86	1	0	0	0	0	1	0	0	0	868	1290	45	4	80	4	ARHGAP15	2	143913137	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2645517	143913137	99286236	136	89551											
MBD5	55777	broad.mit.edu	37	chr2	149226685	149226685	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccactctcaggtacctatGatgaatgtaagcatgcctcc	8	12	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149226685	C	C	149226685	3	2	86	1	0	0	0	0	1	0	0	0	9440	1290	45	4	1187	4	MBD5	2	149226685	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5313548	149226685	93972688	137	89552											
NEB	4703	broad.mit.edu	37	chr2	152553859	152553859	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaacaattgtcttagaaCttacatcactgttttgagct	6	8	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152553859	G	G	152553859	1	3	86	0	1	0	0	0	0	0	0	0	10397	580	20	4		4	NEB	2	152553859	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3327174	152553859	90645514	138	89553											
UPP2	151531	broad.mit.edu	37	chr2	158974203	158974203	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagggaggacttacattttcCtcagcattggcaaagtctta	9	8	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158974203	T	T	158974203	1	4	86	0	1	0	0	0	0	0	0	0	17139	696	24	4		4	UPP2	2	158974203	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6420344	158974203	84225170	139	89554											
SLC4A10	57282	broad.mit.edu	37	chr2	162820795	162820795	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggataataaaagtttcaagaGctgctattgtctttcccatg	8	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162820795	A	A	162820795	3	1	86	1	0	0	0	0	1	0	0	0	14765	971	34	4	3184	4	SLC4A10	2	162820795	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3846592	162820795	80378578	140	89555											
IFIH1	64135	broad.mit.edu	37	chr2	163123986	163123986	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggcccacagcaatttactCacctggccacatttgcagat	7	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163123986	T	T	163123986	1	4	86	0	1	0	0	0	0	0	0	0	7590	841	29	4		4	IFIH1	2	163123986	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	303191	163123986	80075387	141	89556											
COBLL1	22837	broad.mit.edu	37	chr2	165551528	165551528	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtttaaggtttggcagtgGctcttctgggctttcagaaa	13	7	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165551528	A	A	165551528	3	1	86	1	0	0	0	0	1	0	0	0	3686	1203	42	4	1024	4	COBLL1	2	165551528	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2427542	165551528	77647845	142	89557											
SCN3A	6328	broad.mit.edu	37	chr2	165971983	165971983	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accttcagtaaaacaagcttCcggtttaaggtcttcttcgg	8	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165971983	T	T	165971983	3	4	86	1	0	0	0	0	1	0	0	0	14031	864	30	4	2546	4	SCN3A	2	165971983	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	420455	165971983	77227390	143	89558											
SCN2A	6326	broad.mit.edu	37	chr2	166223931	166223931	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcatctgaaatcttttccCtttcccttcaatcaactcat	1	13	6	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166223931	G	G	166223931	1	3	86	0	1	0	0	0	0	0	0	0	14029	696	24	4		4	SCN2A	2	166223931	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	251948	166223931	76975442	144	89559											
TTC21B	79809	broad.mit.edu	37	chr2	166775973	166775973	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaatgcattgttataaTtcaaatgattaagaaatgga	6	3	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166775973	C	C	166775973	1	2	86	0	1	0	0	0	0	0	0	0	16814	1508	52	5		5	TTC21B	2	166775973	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	552042	166775973	76423400	145	89560											
SCN9A	6335	broad.mit.edu	37	chr2	167094772	167094772	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcaatataaatatcttcAaaagcctgtggaaataatat	4	6	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167094772	C	C	167094772	3	2	86	1	0	0	0	0	1	0	0	0	14038	127	5	5	2365	5	SCN9A	2	167094772	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	318799	167094772	76104601	146	89561											
KBTBD10	10324	broad.mit.edu	37	chr2	170338718	170338718	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaatagattgcaagcaggTatagttgtagctataaaatt	8	4	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170338718	C	C	170338718	1	2	86	0	1	0	0	0	0	0	0	0	8060	1653	57	5		5	KBTBD10	2	170338718	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3243946	170338718	72860655	147	89562											
KBTBD10	10324	broad.mit.edu	37	chr2	170371213	170371213	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttcaaacagaggcttcgCtggattcagtattatgctat	8	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170371213	G	G	170371213	3	3	86	1	0	0	0	0	1	0	0	0	8060	796	28	4	1246	4	KBTBD10	2	170371213	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	32495	170371213	72828160	148	89563											
PPIG	9360	broad.mit.edu	37	chr2	170460729	170460729	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgaattattttctgatGtgtgccccaaaacatgcgag	8	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170460729	A	A	170460729	3	1	86	1	0	0	0	0	1	0	0	0	12425	1377	48	4	100	4	PPIG	2	170460729	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	89516	170460729	72738644	149	89564											
RAPGEF4	11069	broad.mit.edu	37	chr2	173782451	173782451	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcctgacacccagcatttCtgctttttaacatgtaaata	4	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173782451	T	T	173782451	1	4	86	0	1	0	0	0	0	0	0	0	13154	928	32	4		4	RAPGEF4	2	173782451	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3321722	173782451	69416922	150	89565											
HOXD8	3234	broad.mit.edu	37	chr2	176995386	176995386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtacttccaccccggcGggggcagcccggccgctgcc	15	17	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176995386	T	T	176995386	3	4	86	1	0	0	0	0	1	0	0	0	7392	1116	39	1	294	1	HOXD8	2	176995386	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3212935	176995386	66203987	151	89566											
HOXD3	3232	broad.mit.edu	37	chr2	177034473	177034473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaaatgcaaccttggaGgtcatatgtctaaactccta	9	9	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177034473	T	T	177034473	1	4	86	0	1	0	0	0	0	0	0	0	7390	1015	35	2		2	HOXD3	2	177034473	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	39087	177034473	66164900	152	89567											
TTN	7273	broad.mit.edu	37	chr2	179590872	179590872	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaaaggtttaagatattCtaatgggtaagtagagtcca	11	3	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179590872	G	G	179590872	1	3	86	0	1	0	0	0	0	0	0	0	16861	928	32	4		4	TTN	2	179590872	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2556399	179590872	63608501	153	89568											
TTN	7273	broad.mit.edu	37	chr2	179602709	179602709	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtcttggttgttggtctctCcagttggtaatacaagcatt	10	7	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179602709	G	G	179602709	1	3	86	0	1	0	0	0	0	0	0	0	16861	870	30	4		4	TTN	2	179602709	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	11837	179602709	63596664	154	89569											
CCDC141	285025	broad.mit.edu	37	chr2	179737000	179737000	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catggtgttcttcatgaggtAcacttcatttttcacatcta	6	9	5	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179737000	T	T	179737000	3	4	86	1	0	0	0	0	1	0	0	0	2801	391	14	5	2457	5	CCDC141	2	179737000	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	134291	179737000	63462373	155	89570											
NCKAP1	10787	broad.mit.edu	37	chr2	183791508	183791508	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcaggaacgactggaacTtttttattgttagtaaaaat	7	5	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183791508	G	G	183791508	1	3	86	0	1	0	0	0	0	0	0	0	10316	1624	56	5		5	NCKAP1	2	183791508	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	4054508	183791508	59407865	156	89571											
COL3A1	1281	broad.mit.edu	37	chr2	189862422	189862422	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtgtatcattatacttttCtaggggcctggtggtgacaa	12	6	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189862422	G	G	189862422	1	3	86	0	1	0	0	0	0	0	0	0	3720	928	32	4		4	COL3A1	2	189862422	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6070914	189862422	53336951	157	89572											
COL5A2	1290	broad.mit.edu	37	chr2	189906410	189906410	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgaaggaccaactgggcCtggaggaccctgcaagaaac	12	12	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189906410	G	G	189906410	3	3	86	1	0	0	0	0	1	0	0	0	3729	681	24	4	984	4	COL5A2	2	189906410	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	43988	189906410	53292963	158	89573											
SLC40A1	30061	broad.mit.edu	37	chr2	190430060	190430060	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatgagaacaaaaggagaGatcattgtgttcagtttacc	9	6	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190430060	A	A	190430060	1	1	86	0	1	0	0	0	0	0	0	0	14742	957	33	4		4	SLC40A1	2	190430060	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	523650	190430060	52769313	159	89574											
DNAH7	56171	broad.mit.edu	37	chr2	196851755	196851755	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gattctattaaacatcccctCccaaaaaataaaaaaaccag	2	11	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196851755	T	T	196851755	1	4	86	0	1	0	0	0	0	0	0	0	4646	870	30	4		4	DNAH7	2	196851755	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6421695	196851755	46347618	160	89575											
HECW2	57520	broad.mit.edu	37	chr2	197183252	197183252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctacgctcgagccaagaGccacagtggtgtccatatcc	10	14	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197183252	T	T	197183252	1	4	86	0	1	0	0	0	0	0	0	0	7110	986	34	3		3	HECW2	2	197183252	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	331497	197183252	46016121	161	89576											
HECW2	57520	broad.mit.edu	37	chr2	197183930	197183930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagttcagcactgccctGgtcagcactgggttgaggct	12	12	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197183930	T	T	197183930	3	4	86	1	0	0	0	0	1	0	0	0	7110	1357	47	2	3118	2	HECW2	2	197183930	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	678	197183930	46015443	162	89577											
FAM117B	150864	broad.mit.edu	37	chr2	203630379	203630379	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcctattgctgtggcctcCctgtctacaaacacagagca	8	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203630379	T	T	203630379	2	4	86	1	0	0	0	0	0	0	0	1	5456	610	22	4		4	FAM117B	2	203630379	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6446449	203630379	39568994	163	89578											
NBEAL1	65065	broad.mit.edu	37	chr2	204055776	204055779	+	Intron	DEL	AGAA	-	-													tcaaggaaccaccaagagacAgaaagaaacagaaaaacatt							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	204055779	-	-	204055776	6	5	86	0	1	1	0	1	0	0	0	0	10282	203	7	0		0	NBEAL1	2	204055776	Intron	DEL	AGAA	TCGA-17-Z057-01A-01W-0747-08	425397	204055776	39143597	164	89579											
RAPH1	65059	broad.mit.edu	37	chr2	204312595	204312595	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggctccggtttttaagaatCaagttgaaatttccaggtct	9	7	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204312595	G	G	204312595	1	3	86	0	1	0	0	0	0	0	0	0	13158	841	29	4		4	RAPH1	2	204312595	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	256819	204312595	38886778	165	89580											
MAP2	4133	broad.mit.edu	37	chr2	210557249	210557249	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttccataatttttgtttTtattctaccattcatttatc	2	7	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210557249	G	G	210557249	1	3	86	0	1	0	0	0	0	0	0	0	9327	1856	64	5		5	MAP2	2	210557249	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	6244654	210557249	32642124	166	89581											
XRCC5	7520	broad.mit.edu	37	chr2	217039984	217039984	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccattacaccctccataAccacctctgctgccaccacc	2	22	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217039984	G	G	217039984	1	3	86	0	1	0	0	0	0	0	0	0	17583	58	2	5		5	XRCC5	2	217039984	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	6482735	217039984	26159389	167	89582											
CCDC108	255101	broad.mit.edu	37	chr2	219885896	219885896	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggaaaggagagagtaGgtgatggtccaggagtactg	18	4	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219885896	T	T	219885896	2	4	86	1	0	0	0	0	0	0	0	1	2769	987	35	2		2	CCDC108	2	219885896	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2845912	219885896	23313477	168	89583											
OBSL1	23363	broad.mit.edu	37	chr2	220420766	220420766	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgctgagcctggccagggTgcgatcgtggtggctctcgc	16	13	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220420766	C	C	220420766	3	2	86	1	0	0	0	0	1	0	0	0	10908	1696	59	5	1160	5	OBSL1	2	220420766	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	534870	220420766	22778607	169	89584											
CUL3	8452	broad.mit.edu	37	chr2	225376227	225376227	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcactcgttctatttcttCattaattctagcttctactt	2	11	6	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225376227	T	T	225376227	3	4	86	1	0	0	0	0	1	0	0	0	4089	835	29	4	1623	4	CUL3	2	225376227	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4955461	225376227	17823146	170	89585											
COL4A4	1286	broad.mit.edu	37	chr2	227983334	227983341	+	Intron	DEL	TGTTAAGA	-	-													gcctgttcacttaagattccTgttaagatgaactgtgggta							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	227983341	-	-	227983334	6	5	86	0	1	1	0	1	0	0	0	0	3725	1595	55	0		0	COL4A4	2	227983334	Intron	DEL	TGTTAAGA	TCGA-17-Z057-01A-01W-0747-08	2607107	227983334	15216039	171	89586											
SP110	3431	broad.mit.edu	37	chr2	231050639	231050639	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgactttacatatctatctGaccctgtactgctccaagag	6	11	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231050639	A	A	231050639	1	1	86	0	1	0	0	0	0	0	0	0	15075	1305	45	4		4	SP110	2	231050639	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3067305	231050639	12148734	172	89587											
NEU2	4759	broad.mit.edu	37	chr2	233897369	233897370	+	5'Flank	INS	-	C	C													acatcttctcttcctgtccaINSccccccagccccatggcgtc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233897370	C	C	233897369	6	5	86	0	1	1	1	0	0	0	0	0	10437	174	6	0		0	NEU2	2	233897369	5'Flank	INS	-	TCGA-17-Z057-01A-01W-0747-08	2846730	233897369	9302004	173	89588											
HDAC4	9759	broad.mit.edu	37	chr2	240066313	240066313	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggacgcttttttagagcagtGaccactggcccgtctttcct	10	12	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240066313	T	T	240066313	2	4	86	1	0	0	0	0	0	0	0	1	7076	1277	45	3		3	HDAC4	2	240066313	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6168944	240066313	3133060	174	89589											
SEPT2	4735	broad.mit.edu	37	chr2	242275334	242275334	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcacctgtcgtaagaacgtGagctttcctcttcacatgct	8	12	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242275334	A	A	242275334	1	1	86	0	1	0	0	0	0	0	0	0	14177	1305	45	4		4	SEPT2	2	242275334	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2209021	242275334	924039	175	89590											
ATG7	10533	broad.mit.edu	37	chr3	11421660	11421660	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtggggtctaaaccctcaGaaaggactttgttttcatgg	13	7	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11421660	A	A	11421660	1	1	86	0	1	0	0	0	0	0	0	0	1105	957	33	4		4	ATG7	3	11421660	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08		11421660	186600770	176	89591											
EFHB	151651	broad.mit.edu	37	chr3	19959661	19959661	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacaaataagatatttaatCaaattttccaaagagactta	3	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19959661	G	G	19959661	1	3	86	0	1	0	0	0	0	0	0	0	4985	841	29	4		4	EFHB	3	19959661	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8538001	19959661	178062769	177	89592											
THRB	7068	broad.mit.edu	37	chr3	24188166	24188166	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtgaagatctacttacAatctgttgccatgccaacat	7	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24188166	T	T	24188166	3	4	86	1	0	0	0	0	1	0	0	0	15998	144	5	5	873	5	THRB	3	24188166	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	4228505	24188166	173834264	178	89593											
SCN10A	6336	broad.mit.edu	37	chr3	38764740	38764740	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcatgagatgcagatacCacggccaggctgctgccacc	13	13	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38764740	T	T	38764740	1	4	86	0	1	0	0	0	0	0	0	0	14025	609	21	4		4	SCN10A	3	38764740	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	14576574	38764740	159257690	179	89594											
SCN10A	6336	broad.mit.edu	37	chr3	38766609	38766609	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accctccagcctctaccagcCcactgctcagtgtctggctg	8	18	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38766609	G	G	38766609	1	3	86	0	1	0	0	0	0	0	0	0	14025	638	22	4		4	SCN10A	3	38766609	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1869	38766609	159255821	180	89595											
RPSA	3921	broad.mit.edu	37	chr3	39449255	39449255	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttccagatggaacagtaCatctataaaaggaaaagtga	9	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39449255	T	T	39449255	2	4	86	1	0	0	0	0	0	0	0	1	13774	489	17	4		4	RPSA	3	39449255	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	682646	39449255	158573175	181	89596											
LARS2	23395	broad.mit.edu	37	chr3	45565506	45565506	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcaagcctctcagagcgtCattctccacagccccgagtt	8	15	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45565506	T	T	45565506	2	4	86	1	0	0	0	0	0	0	0	1	8707	813	29	4		4	LARS2	3	45565506	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6116251	45565506	152456924	182	89597											
PFKFB4	5210	broad.mit.edu	37	chr3	48587554	48587554	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggggccaagcctcaccccGagtgggcacaccaatccagt	11	16	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48587554	A	A	48587554	3	1	86	1	0	0	0	0	1	0	0	0	11858	1057	37	4	1250	4	PFKFB4	3	48587554	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3022048	48587554	149434876	183	89598											
USP4	7375	broad.mit.edu	37	chr3	49331916	49331917	+	Frame_Shift_Ins	INS	-	GC	GC													acagaaagcaatagtggctgINScccatatagcgctgatgcgg							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	49331917	GC	GC	49331916	7	5	86	1	0	1	1	0	0	0	0	0	17198	1328	46	0	1120	0	USP4	3	49331916	Frame_Shift_Ins	INS	-	TCGA-17-Z057-01A-01W-0747-08	744362	49331916	148690514	184	89599											
ERC2	26059	broad.mit.edu	37	chr3	56026386	56026386	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagagaaaatcaccaccAagatttatgggtatattgtc	9	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56026386	G	G	56026386	1	3	86	0	1	0	0	0	0	0	0	0	5253	145	5	5		5	ERC2	3	56026386	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	6694470	56026386	141996044	185	89600											
C3orf67	200844	broad.mit.edu	37	chr3	58728278	58728278	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtacttcctcgtcctctTccacactgaggtcttcttca	5	15	5	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58728278	A	A	58728278	3	1	86	1	0	0	0	0	1	0	0	0	2263	1783	62	5	94	5	C3orf67	3	58728278	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2701892	58728278	139294152	186	89601											
PTPRG	5793	broad.mit.edu	37	chr3	61989164	61989164	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcaatggcaggaggtttcCtgttgaggtgagagaaagtc	14	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61989164	T	T	61989164	3	4	86	1	0	0	0	0	1	0	0	0	12910	681	24	4	526	4	PTPRG	3	61989164	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3260886	61989164	136033266	187	89602											
ADAMTS9	56999	broad.mit.edu	37	chr3	64606723	64606723	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catcccctccttttgcttctCctgctgggacctcctgcaag	7	17	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64606723	G	G	64606723	1	3	86	0	1	0	0	0	0	0	0	0	273	870	30	4		4	ADAMTS9	3	64606723	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2617559	64606723	133415707	188	89603											
CADM2	253559	broad.mit.edu	37	chr3	86062749	86062749	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaagaaactctcagggaaGagagagaatcacacttcttt	10	7	3	4	rs111547629		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86062749	A	A	86062749	1	1	86	0	1	0	0	0	0	0	0	0	2593	957	33	4		4	CADM2	3	86062749	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	21456026	86062749	111959681	189	89604											
EPHA3	2042	broad.mit.edu	37	chr3	89448578	89448578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatccgagcccgaacagcCgctggatatgggacgaacag	12	12	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89448578	A	A	89448578	2	1	86	1	0	0	0	0	0	0	0	1	5210	639	23	1		1	EPHA3	3	89448578	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3385829	89448578	108573852	190	89605											
ABI3BP	25890	broad.mit.edu	37	chr3	100498938	100498938	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttaccatccaagtttcagAgctgagctgtcataaaagtc	8	9	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100498938	T	T	100498938	1	4	86	0	1	0	0	0	0	0	0	0	91	319	11	5		5	ABI3BP	3	100498938	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	11050360	100498938	97523492	191	89606											
CCDC80	151887	broad.mit.edu	37	chr3	112349238	112349238	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatctaagctacaaatgttCtgctgaacagttagcataat	7	8	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112349238	A	A	112349238	1	1	86	0	1	0	0	0	0	0	0	0	2882	928	32	3		3	CCDC80	3	112349238	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	11850300	112349238	85673192	192	89607											
KIAA2018	205717	broad.mit.edu	37	chr3	113373722	113373722	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttctcttcatgtacatgTctgtgcacatgcacgcacaa	6	13	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113373722	C	C	113373722	1	2	86	0	1	0	0	0	0	0	0	0	8338	1682	58	5		5	KIAA2018	3	113373722	3'UTR	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1024484	113373722	84648708	193	89608											
PLA1A	51365	broad.mit.edu	37	chr3	119337141	119337141	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtcaagaattctatccaaTttgggaaaagaaaattaagc	8	5	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119337141	C	C	119337141	1	2	86	0	1	0	0	0	0	0	0	0	12083	1508	52	5		5	PLA1A	3	119337141	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	5963419	119337141	78685289	194	89609											
OSBPL11	114885	broad.mit.edu	37	chr3	125313607	125313607	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagctttccttcgctctccGagactttcattgtggacact	7	14	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125313607	C	C	125313607	3	2	86	1	0	0	0	0	1	0	0	0	11370	1059	37	4	2257	4	OSBPL11	3	125313607	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5976466	125313607	72708823	195	89610											
ACAD11	84129	broad.mit.edu	37	chr3	132338449	132338449	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatacaaagtaaacaatgtCataaactgctaatatctaaa	3	6	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132338449	G	G	132338449	1	3	86	0	1	0	0	0	0	0	0	0	109	841	29	4		4	ACAD11	3	132338449	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	7024842	132338449	65683981	196	89611											
ESYT3	83850	broad.mit.edu	37	chr3	138188158	138188158	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcattagagtagctttctctCaaagagaagtaactgggtgg	12	6	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138188158	G	G	138188158	1	3	86	0	1	0	0	0	0	0	0	0	5308	841	29	4		4	ESYT3	3	138188158	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5849709	138188158	59834272	197	89612											
FOXL2	668	broad.mit.edu	37	chr3	138665213	138665213	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttgcgctcgccgccgccctCgcgcggcaccttgatgaagc	12	18	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138665213	G	G	138665213	3	3	86	1	0	0	0	0	1	0	0	0	6077	893	31	4	782	4	FOXL2	3	138665213	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	477055	138665213	59357217	198	89613											
ZIC4	84107	broad.mit.edu	37	chr3	147106546	147106546	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagatgcaccgtggcgaagAaacactgctttgtgcgcggg	15	9	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147106546	G	G	147106546	1	3	86	0	1	0	0	0	0	0	0	0	17807	261	9	5		5	ZIC4	3	147106546	3'UTR	SNP	A	TCGA-17-Z057-01A-01W-0747-08	8441333	147106546	50915884	199	89614											
CPB1	1360	broad.mit.edu	37	chr3	148545910	148545910	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatctaatttaaaatcttaGatcgcactgtgattccgaca	5	9	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148545910	C	C	148545910	1	2	86	0	1	0	0	0	0	0	0	0	3828	957	33	4		4	CPB1	3	148545910	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1439364	148545910	49476520	200	89615											
KCNAB1	7881	broad.mit.edu	37	chr3	155838622	155838622	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaactggtacctaaagctCtgcgacctgtccagcgagca	10	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155838622	A	A	155838622	2	1	86	1	0	0	0	0	0	0	0	1	8079	900	32	3		3	KCNAB1	3	155838622	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	7292712	155838622	42183808	201	89616											
GFM1	85476	broad.mit.edu	37	chr3	158363929	158363929	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatgcagggacagagaaagTctgaattgctgtgcttgtgt	14	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158363929	G	G	158363929	1	3	86	0	1	0	0	0	0	0	0	0	6405	1682	58	5		5	GFM1	3	158363929	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2525307	158363929	39658501	202	89617											
SI	6476	broad.mit.edu	37	chr3	164733773	164733773	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctcattccttctcctctTattttgtcaacaaactgagg	4	11	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164733773	C	C	164733773	3	2	86	1	0	0	0	0	1	0	0	0	14410	1744	61	5	1696	5	SI	3	164733773	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	6369844	164733773	33288657	203	89618											
SI	6476	broad.mit.edu	37	chr3	164780228	164780228	+	Frame_Shift_Del	DEL	G	-	-													taaaaatccagaatgccaccGgtaactctatatgttactat					rs144637860		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164780228	-	-	164780228	7	5	86	1	0	1	0	1	0	0	0	0	14410	1103	39	0	4692	0	SI	3	164780228	Frame_Shift_Del	DEL	G	TCGA-17-Z057-01A-01W-0747-08	46455	164780228	33242202	204	89619											
SI	6476	broad.mit.edu	37	chr3	164793793	164793793	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaatccactaaatttctttCttgccatctaaaaacagaaa	2	11	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164793793	A	A	164793793	3	1	86	1	0	0	0	0	1	0	0	0	14410	913	32	3	5663	3	SI	3	164793793	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	13565	164793793	33228637	205	89620											
SLITRK3	22865	broad.mit.edu	37	chr3	164906589	164906589	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcgacgccttcggagcacgTaggcaaagaggcctgcagca	13	12	0	1	rs149449605		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164906589	A	A	164906589	3	1	86	1	0	0	0	0	1	0	0	0	14858	1638	57	5	907	5	SLITRK3	3	164906589	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	112796	164906589	33115841	206	89621											
SLITRK3	22865	broad.mit.edu	37	chr3	164908111	164908111	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcaatttacttaggttccGaaatgccccactctcaatac	4	14	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164908111	A	A	164908111	3	1	86	1	0	0	0	0	1	0	0	0	14858	1057	37	4	2429	4	SLITRK3	3	164908111	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1522	164908111	33114319	207	89622											
WDR49	151790	broad.mit.edu	37	chr3	167246931	167246931	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acataataatcgatccaactCcactatgagccaaaaattca	3	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167246931	G	G	167246931	3	3	86	1	0	0	0	0	1	0	0	0	17429	855	30	4	858	4	WDR49	3	167246931	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2338820	167246931	30775499	208	89623											
WDR49	151790	broad.mit.edu	37	chr3	167320081	167320081	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctaatcagaattagaaaGaaaaaaaatgtttttaatag	6	2	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167320081	C	C	167320081	1	2	86	0	1	0	0	0	0	0	0	0	17429	957	33	4		4	WDR49	3	167320081	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	73150	167320081	30702349	209	89624											
MECOM	2122	broad.mit.edu	37	chr3	168833862	168833862	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaatgtcactttccagatCagagcccgaggttgtttcca	8	11	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168833862	G	G	168833862	3	3	86	1	0	0	0	0	1	0	0	0	9515	826	29	4	1961	4	MECOM	3	168833862	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1513781	168833862	29188568	210	89625											
LRRC34	151827	broad.mit.edu	37	chr3	169511466	169511466	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagagcaaaacctgcattaGatgagtggtcataagattct	9	7	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169511466	C	C	169511466	3	2	86	1	0	0	0	0	1	0	0	0	9076	942	33	4	46	4	LRRC34	3	169511466	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	677604	169511466	28510964	211	89626											
TNIK	23043	broad.mit.edu	37	chr3	170784276	170784276	+	Intron	DEL	G	-	-													atttttttttttttttttttGtggaatcaaatggttgtttc					rs113144713		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170784276	-	-	170784276	6	5	86	0	1	1	0	1	0	0	0	0	16436	1392	48	0		0	TNIK	3	170784276	Intron	DEL	G	TCGA-17-Z057-01A-01W-0747-08	1272810	170784276	27238154	212	89627											
FNDC3B	64778	broad.mit.edu	37	chr3	172062044	172062044	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtgagggctctgaatgatgGaggggtgagtataagcccat	17	5	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172062044	C	C	172062044	3	2	86	1	0	0	0	0	1	0	0	0	6028	1174	41	4	2316	4	FNDC3B	3	172062044	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1277768	172062044	25960386	213	89628											
ECT2	1894	broad.mit.edu	37	chr3	172501634	172501634	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccctttgtaaacttctttGaaatgagcaaggaaacaatt	6	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172501634	C	C	172501634	3	2	86	1	0	0	0	0	1	0	0	0	4941	1291	45	4	1624	4	ECT2	3	172501634	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	439590	172501634	25520796	214	89629											
ACTL6A	86	broad.mit.edu	37	chr3	179292326	179292326	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaatatgataactctgggaGaagacatacgccaattattg	9	6	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179292326	A	A	179292326	1	1	86	0	1	0	0	0	0	0	0	0	198	957	33	4		4	ACTL6A	3	179292326	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6790692	179292326	18730104	215	89630											
USP13	8975	broad.mit.edu	37	chr3	179458268	179458268	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctccccactctctttcttCaatctctcctgttaaagctg	4	16	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179458268	A	A	179458268	1	1	86	0	1	0	0	0	0	0	0	0	17170	841	29	3		3	USP13	3	179458268	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	165942	179458268	18564162	216	89631											
TTC14	151613	broad.mit.edu	37	chr3	180324017	180324017	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgtttgaagtgtttgtgAtgctttacaaatgtcttttt	8	3	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180324017	G	G	180324017	1	3	86	0	1	0	0	0	0	0	0	0	16807	348	12	5		5	TTC14	3	180324017	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	865749	180324017	17698413	217	89632											
ATP11B	23200	broad.mit.edu	37	chr3	182616476	182616476	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttggtttgccataatcctCatggttgttacatgtctatt	8	8	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182616476	A	A	182616476	2	1	86	1	0	0	0	0	0	0	0	1	1124	813	29	3		3	ATP11B	3	182616476	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2292459	182616476	15405954	218	89633											
MCCC1	56922	broad.mit.edu	37	chr3	182812357	182812357	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcagtacctgtggctgtTgtgtacttcatggttctttg	11	8	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182812357	A	A	182812357	2	1	86	1	0	0	0	0	0	0	0	1	9467	1799	63	5		5	MCCC1	3	182812357	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	195881	182812357	15210073	219	89634											
HTR3E	285242	broad.mit.edu	37	chr3	183824454	183824454	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatggcctcctctatcatCaccgtcatatgcctctggaa	6	14	6	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183824454	A	A	183824454	2	1	86	1	0	0	0	0	0	0	0	1	7518	816	29	3		3	HTR3E	3	183824454	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1012097	183824454	14197976	220	89635											
AHSG	197	broad.mit.edu	37	chr3	186330903	186330903	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcctccaaccacctgcaCgcctgccagggcctctctgg	10	18	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186330903	T	T	186330903	1	4	86	1	0	0	0	0	0	0	0	0	420	551	19	4		4	AHSG	3	186330903	Translation_Start_Site	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2506449	186330903	11691527	221	89636											
ADIPOQ	9370	broad.mit.edu	37	chr3	186571979	186571979	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcattccttaggtcttaTtggtcctaagggagacatcg	9	9	2	1	rs138835949		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186571979	C	C	186571979	3	2	86	1	0	0	0	0	1	0	0	0	317	1493	52	5	227	5	ADIPOQ	3	186571979	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	241076	186571979	11450451	222	89637											
CLDN16	10686	broad.mit.edu	37	chr3	190106128	190106128	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttgccacaatgagggatCttcttcaatacatcgcttgc	8	11	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190106128	T	T	190106128	3	4	86	1	0	0	0	0	1	0	0	0	3508	913	32	4	222	4	CLDN16	3	190106128	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3534149	190106128	7916302	223	89638											
C3orf59	151963	broad.mit.edu	37	chr3	192516720	192516720	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgatggctttgcaggcctGataggcctgcatgaggctgc	15	9	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192516720	C	C	192516720	3	2	86	1	0	0	0	0	1	0	0	0	2259	1299	45	4	548	4	C3orf59	3	192516720	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2410592	192516720	5505710	224	89639											
ATP13A5	344905	broad.mit.edu	37	chr3	193029558	193029558	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctcctcctcctttcgcctCgctgatttgaggagcaaaac	7	15	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193029558	T	T	193029558	1	4	86	0	1	0	0	0	0	0	0	0	1131	899	31	4		4	ATP13A5	3	193029558	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	512838	193029558	4992872	225	89640											
ATP13A4	84239	broad.mit.edu	37	chr3	193151776	193151776	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattagatattgattacattTattttctcactgtgacatag	5	5	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193151776	C	C	193151776	1	2	86	0	1	0	0	0	0	0	0	0	1130	1769	61	5		5	ATP13A4	3	193151776	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	122218	193151776	4870654	226	89641											
ATP13A4	84239	broad.mit.edu	37	chr3	193166055	193166055	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccaagacaggttttgtctCttccttcaatcgattctcca	5	12	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193166055	G	G	193166055	3	3	86	1	0	0	0	0	1	0	0	0	1130	922	32	4	1550	4	ATP13A4	3	193166055	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	14279	193166055	4856375	227	89642											
ATP13A4	84239	broad.mit.edu	37	chr3	193220354	193220354	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgagagggtggtcaggagtGagaccaaatgcgctgtttaa	15	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193220354	T	T	193220354	2	4	86	1	0	0	0	0	0	0	0	1	1130	1277	45	3		3	ATP13A4	3	193220354	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	54299	193220354	4802076	228	89643											
LSG1	55341	broad.mit.edu	37	chr3	194380842	194380842	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgggtttcgagcatctActatctggaccacaatatca	10	9	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194380842	T	T	194380842	3	4	86	1	0	0	0	0	1	0	0	0	9136	391	14	5	1470	5	LSG1	3	194380842	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1160488	194380842	3641588	229	89644											
UBXN7	26043	broad.mit.edu	37	chr3	196129759	196129759	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaagccttcacatcttttGatggtttcattaaaatccta	5	9	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196129759	C	C	196129759	1	2	86	0	1	0	0	0	0	0	0	0	17044	1305	45	4		4	UBXN7	3	196129759	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1748917	196129759	1892671	230	89645											
KIAA0226	9711	broad.mit.edu	37	chr3	197401799	197401799	+	3'UTR	DEL	G	-	-													taaaaaaaaaaaaaaaaaaaGaagccccaggtggggcgagt							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197401799	-	-	197401799	6	5	86	0	1	1	0	1	0	0	0	0	8232	957	33	0		0	KIAA0226	3	197401799	3'UTR	DEL	G	TCGA-17-Z057-01A-01W-0747-08	1272040	197401799	620631	231	89646											
JAKMIP1	152789	broad.mit.edu	37	chr4	6062058	6062058	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctcctgatccagccccacaGaatgtcccccttggcacaag	8	17	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6062058	A	A	6062058	1	1	86	0	1	0	0	0	0	0	0	0	8010	957	33	4		4	JAKMIP1	4	6062058	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08		6062058	185092218	232	89647											
DRD5	1816	broad.mit.edu	37	chr4	9783935	9783935	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttcgtggcgctgctggtCatgccctggaaggcagtcgc	14	12	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9783935	G	G	9783935	2	3	86	1	0	0	0	0	0	0	0	1	4800	813	29	4		4	DRD5	4	9783935	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3721877	9783935	181370341	233	89648											
BOD1L	259282	broad.mit.edu	37	chr4	13578381	13578381	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgaatgattcagttcaaaGagaatcccagaaaacccaga	7	9	2	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13578381	C	C	13578381	1	2	86	0	1	0	0	0	0	0	0	0	1489	957	33	4		4	BOD1L	4	13578381	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3794446	13578381	177575895	234	89649											
BOD1L	259282	broad.mit.edu	37	chr4	13604519	13604519	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacttgtcttaaggacttcTgattccctaacagtcagact	6	11	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13604519	A	A	13604519	2	1	86	1	0	0	0	0	0	0	0	1	1489	1567	55	5		5	BOD1L	4	13604519	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	26138	13604519	177549757	235	89650											
TAPT1	202018	broad.mit.edu	37	chr4	16164961	16164961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtttccacaaattgtgaaCctgtctatctctaacaaatc	5	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16164961	A	A	16164961	3	1	86	1	0	0	0	0	1	0	0	0	15673	506	18	3	33	3	TAPT1	4	16164961	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2560442	16164961	174989315	236	89651											
LDB2	9079	broad.mit.edu	37	chr4	16692159	16692159	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggggagggagggagggaGggaggttggggaaaggaagg	28	0	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16692159	T	T	16692159	1	4	86	0	1	0	0	0	0	0	0	0	8768	1015	35	2		2	LDB2	4	16692159	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	527198	16692159	174462117	237	89652											
SLIT2	9353	broad.mit.edu	37	chr4	20526711	20526711	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attcttaatctaatataactCatatctctgcttgctgacat	3	9	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20526711	G	G	20526711	1	3	86	0	1	0	0	0	0	0	0	0	14854	841	29	4		4	SLIT2	4	20526711	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3834552	20526711	170627565	238	89653											
PACRGL	133015	broad.mit.edu	37	chr4	20715231	20715231	+	Intron	SNP	T	G	G													catccatatctcttcatgatTtaacaatttcaaatcttcaa							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20715231	G	G	20715231	1	3	86	0	1	0	0	0	0	0	0	0	11465	1856	64	5		5	PACRGL	4	20715231	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	188520	20715231	170439045	239	89654	405	2									
PACRGL	133015	broad.mit.edu	37	chr4	20715241	20715241	+	Intron	SNP	C	A	A													tcttcatgatttaacaatttCaaatcttcaactcaaaacct							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20715241	A	A	20715241	1	1	86	0	1	0	0	0	0	0	0	0	11465	841	29	3		3	PACRGL	4	20715241	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	10	20715241	170439035	240	89655	405	2									
GPR125	166647	broad.mit.edu	37	chr4	22425797	22425797	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttttctcaggagtctatGataatgttacacttactgtt	6	6	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22425797	A	A	22425797	1	1	86	0	1	0	0	0	0	0	0	0	6704	1305	45	4		4	GPR125	4	22425797	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1710556	22425797	168728479	241	89656											
TLR10	81793	broad.mit.edu	37	chr4	38777871	38777871	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaaaacaatttccaggtGtgacatgttgccagcttctc	8	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38777871	T	T	38777871	1	4	86	0	1	0	0	0	0	0	0	0	16073	1392	48	3		3	TLR10	4	38777871	5'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	16352074	38777871	152376405	242	89657											
ATP8A1	10396	broad.mit.edu	37	chr4	42553162	42553162	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtattactttatctttgaagCtatgcaaatgtattacttgg	7	5	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42553162	T	T	42553162	1	4	86	0	1	0	0	0	0	0	0	0	1196	812	28	4		4	ATP8A1	4	42553162	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3775291	42553162	148601114	243	89658											
KDR	3791	broad.mit.edu	37	chr4	55948765	55948765	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaatgtttttacactcaCaggccggctctttcgcttac	6	12	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55948765	T	T	55948765	3	4	86	1	0	0	0	0	1	0	0	0	8209	478	17	4	382	4	KDR	4	55948765	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	13395603	55948765	135205511	244	89659											
KDR	3791	broad.mit.edu	37	chr4	55953884	55953884	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagaatcctcttccatgctCaaagtctctgatatcggaag	7	12	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55953884	G	G	55953884	3	3	86	1	0	0	0	0	1	0	0	0	8209	825	29	4	534	4	KDR	4	55953884	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5119	55953884	135200392	245	89660											
KDR	3791	broad.mit.edu	37	chr4	55976528	55976528	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatttggaagacaatgtatCataataaatcttgggcagag	10	4	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55976528	G	G	55976528	1	3	86	0	1	0	0	0	0	0	0	0	8209	841	29	4		4	KDR	4	55976528	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	22644	55976528	135177748	246	89661											
UGT2B10	7365	broad.mit.edu	37	chr4	69886090	69886090	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagttcctttcagagccatcCtggtgcaatgtgataattct	9	9	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69886090	T	T	69886090	1	4	86	0	1	0	0	0	0	0	0	0	17082	696	24	4		4	UGT2B10	4	69886090	5'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	13909562	69886090	121268186	247	89662											
UGT2B7	7364	broad.mit.edu	37	chr4	69978172	69978172	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtctttatttttatctttCagatataaagagaatgttat	5	4	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69978172	G	G	69978172	1	3	86	0	1	0	0	0	0	0	0	0	17088	841	29	4		4	UGT2B7	4	69978172	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	92082	69978172	121176104	248	89663											
AMTN	401138	broad.mit.edu	37	chr4	71389486	71389486	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccttcatggtaaacccacCtctgacaggactgtcaatta	6	12	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71389486	T	T	71389486	1	4	86	0	1	0	0	0	0	0	0	0	590	696	24	4		4	AMTN	4	71389486	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1411314	71389486	119764790	249	89664											
FRAS1	80144	broad.mit.edu	37	chr4	79391111	79391111	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttgtgaatgatgagttttCttttctgccctccccttcag	7	11	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79391111	G	G	79391111	1	3	86	0	1	0	0	0	0	0	0	0	6102	928	32	4		4	FRAS1	4	79391111	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8001625	79391111	111763165	250	89665											
BMP2K	55589	broad.mit.edu	37	chr4	79747157	79747157	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttggcatttgtttttgtTtcttttaaattaattggtgc	7	3	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79747157	C	C	79747157	1	2	86	0	1	0	0	0	0	0	0	0	1466	1856	64	5		5	BMP2K	4	79747157	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	356046	79747157	111407119	251	89666											
SEC31A	22872	broad.mit.edu	37	chr4	83796830	83796830	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataagtaggtttaggagaActacttttggcttttttgat	9	3	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83796830	G	G	83796830	1	3	86	0	1	0	0	0	0	0	0	0	14111	58	2	5		5	SEC31A	4	83796830	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	4049673	83796830	107357446	252	89667											
THAP9	79725	broad.mit.edu	37	chr4	83839864	83839864	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgccatcaatcactttgtCaagttgctaaaggatataat	7	7	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83839864	G	G	83839864	2	3	86	1	0	0	0	0	0	0	0	1	15974	813	29	4		4	THAP9	4	83839864	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	43034	83839864	107314412	253	89668											
HELQ	113510	broad.mit.edu	37	chr4	84369980	84369980	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaagaatcattaaaacatCtttccgacagcaaagcagtt	7	8	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84369980	G	G	84369980	3	3	86	1	0	0	0	0	1	0	0	0	7114	913	32	4	2222	4	HELQ	4	84369980	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	530116	84369980	106784296	254	89669											
NUDT9	53343	broad.mit.edu	37	chr4	88344162	88344162	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccgcggcatccaggcgttCaggtattccaccctcctact	9	16	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88344162	G	G	88344162	3	3	86	1	0	0	0	0	1	0	0	0	10841	825	29	4	107	4	NUDT9	4	88344162	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3974182	88344162	102810114	255	89670											
FAM190A	401145	broad.mit.edu	37	chr4	91230572	91230572	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaagaaaatatagggttAcaaaatggtgaaacaatgct	10	3	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91230572	G	G	91230572	2	3	86	1	0	0	0	0	0	0	0	1	5568	388	14	5		5	FAM190A	4	91230572	Silent	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2886410	91230572	99923704	256	89671											
FAM190A	401145	broad.mit.edu	37	chr4	91389423	91389423	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcactctgtcgtctcatgtGccgcagtagttcttactcct	7	13	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91389423	A	A	91389423	3	1	86	1	0	0	0	0	1	0	0	0	5568	1319	46	4	1656	4	FAM190A	4	91389423	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	158851	91389423	99764853	257	89672											
CENPE	1062	broad.mit.edu	37	chr4	104061195	104061195	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcatattgacatcttctttCactctaagcagttgaagttc	5	10	5	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104061195	G	G	104061195	2	3	86	1	0	0	0	0	0	0	0	1	3260	813	29	4		4	CENPE	4	104061195	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	12671772	104061195	87093081	258	89673											
NDST3	9348	broad.mit.edu	37	chr4	119115383	119115383	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaactagtccttgtagcacCcttccagtgcaatctccatg	7	13	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119115383	T	T	119115383	1	4	86	0	1	0	0	0	0	0	0	0	10352	638	22	4		4	NDST3	4	119115383	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	15054188	119115383	72038893	259	89674											
PDE5A	8654	broad.mit.edu	37	chr4	120474861	120474861	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccatagtatttttgacatActgagcatacatgtaattga	6	6	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120474861	T	T	120474861	3	4	86	1	0	0	0	0	1	0	0	0	11738	391	14	5	1443	5	PDE5A	4	120474861	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1359478	120474861	70679415	260	89675											
BBS7	55212	broad.mit.edu	37	chr4	122756398	122756398	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgaattcttggagtcacaTatgcttgtagtgtgccatac	10	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122756398	C	C	122756398	3	2	86	1	0	0	0	0	1	0	0	0	1346	1406	49	5	764	5	BBS7	4	122756398	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2281537	122756398	68397878	261	89676											
FAT4	79633	broad.mit.edu	37	chr4	126373592	126373592	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatcatgactcctgtgtGcatggcccatgtcagaatgg	13	9	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126373592	T	T	126373592	2	4	86	1	0	0	0	0	0	0	0	1	5749	1306	46	3		3	FAT4	4	126373592	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3617194	126373592	64780684	262	89677											
USP38	84640	broad.mit.edu	37	chr4	144107322	144107322	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaatatctcataaaaaAtcagtatatgtctctcttgc	4	8	5	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144107322	G	G	144107322	1	3	86	0	1	0	0	0	0	0	0	0	17196	116	4	5		5	USP38	4	144107322	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	17733730	144107322	47046954	263	89678											
POU4F2	5458	broad.mit.edu	37	chr4	147560228	147560228	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccggctggcccggcacttctCggagggtcccggcagccggg	17	16	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147560228	G	G	147560228	1	3	86	0	1	0	0	0	0	0	0	0	12375	899	31	4		4	POU4F2	4	147560228	5'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3452906	147560228	43594048	264	89679											
DCHS2	54798	broad.mit.edu	37	chr4	155249394	155249394	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcagcaaaagtttaaaaaGaaatatcagtggacctttaa	7	5	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155249394	C	C	155249394	1	2	86	0	1	0	0	0	0	0	0	0	4321	957	33	4		4	DCHS2	4	155249394	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7689166	155249394	35904882	265	89680											
FAM198B	51313	broad.mit.edu	37	chr4	159048496	159048496	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcttgaggttgatgtgcttGatttaaaaacaaaaccaaaa	9	5	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159048496	C	C	159048496	1	2	86	0	1	0	0	0	0	0	0	0	5576	1305	45	4		4	FAM198B	4	159048496	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3799102	159048496	32105780	266	89681											
RAPGEF2	9693	broad.mit.edu	37	chr4	160265100	160265100	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttctagaactgcttatccAgaagtctagtcctttctttc	6	11	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160265100	C	C	160265100	1	2	86	0	1	0	0	0	0	0	0	0	13152	203	7	5		5	RAPGEF2	4	160265100	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1216604	160265100	30889176	267	89682											
CPE	1363	broad.mit.edu	37	chr4	166418655	166418655	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aataatatgttcttgattttCtcttttaggttgattttgaa	6	3	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166418655	G	G	166418655	1	3	86	0	1	0	0	0	0	0	0	0	3831	928	32	4		4	CPE	4	166418655	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6153555	166418655	24735621	268	89683											
MORF4	10934	broad.mit.edu	37	chr4	174537309	174537309	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgggacatgggtgcatcGggacaatctgcaagaatttc	12	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174537309	C	C	174537309	2	2	86	1	0	0	0	0	0	0	0	1	9799	1103	39	4		4	MORF4	4	174537309	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	8118654	174537309	16616967	269	89684											
FAT1	2195	broad.mit.edu	37	chr4	187527386	187527386	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcttttcaggcaaaagacaGaatgcacgttcattttcaca	6	9	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187527386	C	C	187527386	1	2	86	0	1	0	0	0	0	0	0	0	5746	957	33	4		4	FAT1	4	187527386	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	12990077	187527386	3626890	270	89685											
FAT1	2195	broad.mit.edu	37	chr4	187539602	187539602	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccaataggcacgtcctctGacactgtaaaggtatagaaa	8	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187539602	C	C	187539602	4	2	86	1	0	0	0	0	0	1	0	0	5746	1294	45	4	5700	4	FAT1	4	187539602	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	12216	187539602	3614674	271	89686											
AHRR	57491	broad.mit.edu	37	chr5	314505	314505	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctccttccatttactatcgAgatttaaatgcctgttttct	5	10	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	314505	T	T	314505	1	4	86	0	1	0	0	0	0	0	0	0	417	319	11	5		5	AHRR	5	314505	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08		314505	180600755	272	89687											
SLC9A3	6550	broad.mit.edu	37	chr5	485292	485292	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccttcacgcagtccacgcCagtcacgttgtcacctccca	7	19	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	485292	T	T	485292	3	4	86	1	0	0	0	0	1	0	0	0	14827	594	21	4	1830	4	SLC9A3	5	485292	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	170787	485292	180429968	273	89688											
IRX2	153572	broad.mit.edu	37	chr5	2747724	2747724	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccacggtgcagccctcgCtggcatctgtcaggggagtg	14	13	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2747724	T	T	2747724	3	4	86	1	0	0	0	0	1	0	0	0	7914	797	28	4	49	4	IRX2	5	2747724	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2262432	2747724	178167536	274	89689											
NSUN2	54888	broad.mit.edu	37	chr5	6609860	6609860	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcctctttcctctgtacTtctactaaactccggttagt	5	13	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6609860	C	C	6609860	1	2	86	0	1	0	0	0	0	0	0	0	10773	1624	56	5		5	NSUN2	5	6609860	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3862136	6609860	174305400	275	89690											
MTRR	4552	broad.mit.edu	37	chr5	7875227	7875227	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacatgcatagaattactcaAggaaaataaaatgtgaagct	7	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7875227	T	T	7875227	1	4	86	0	1	0	0	0	0	0	0	0	10055	87	3	5		5	MTRR	5	7875227	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1265367	7875227	173040033	276	89691											
DNAH5	1767	broad.mit.edu	37	chr5	13692315	13692315	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggagaatgcagagccaTgcttctgcattctgtaggtc	11	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13692315	C	C	13692315	1	2	86	0	1	0	0	0	0	0	0	0	4644	1479	51	5		5	DNAH5	5	13692315	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	5817088	13692315	167222945	277	89692											
MYO10	4651	broad.mit.edu	37	chr5	16699618	16699618	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagctgtacacagagtcaCgccggtatgaaagctcatca	9	12	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16699618	T	T	16699618	3	4	86	1	0	0	0	0	1	0	0	0	10156	536	19	4	2743	4	MYO10	5	16699618	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3007303	16699618	164215642	278	89693											
CDH12	1010	broad.mit.edu	37	chr5	21854705	21854705	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctatattagaatatgcaactCcccatgccaagatttaatta	4	9	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21854705	G	G	21854705	1	3	86	0	1	0	0	0	0	0	0	0	3128	870	30	4		4	CDH12	5	21854705	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5155087	21854705	159060555	279	89694											
LMBRD2	92255	broad.mit.edu	37	chr5	36114686	36114686	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatttccattcctttccatCattagaaaatttgcctataa	2	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36114686	A	A	36114686	1	1	86	0	1	0	0	0	0	0	0	0	8917	841	29	3		3	LMBRD2	5	36114686	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	14259981	36114686	144800574	280	89695											
LMBRD2	92255	broad.mit.edu	37	chr5	36116825	36116825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcgccctgtcacccaggCtggagtgcagtggcgcgatc	14	14	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36116825	A	A	36116825	1	1	86	0	1	0	0	0	0	0	0	0	8917	812	28	3		3	LMBRD2	5	36116825	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2139	36116825	144798435	281	89696											
EGFLAM	133584	broad.mit.edu	37	chr5	38451300	38451300	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtaatgaagtaagtgtcAgaaagtgccagactatcctt	11	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38451300	T	T	38451300	1	4	86	0	1	0	0	0	0	0	0	0	5006	203	7	5		5	EGFLAM	5	38451300	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2334475	38451300	142463960	282	89697											
FYB	2533	broad.mit.edu	37	chr5	39169813	39169813	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaaattagccgggccagtcGaaggttagatagttcatgtg	12	6	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39169813	A	A	39169813	1	1	86	0	1	0	0	0	0	0	0	0	6184	1073	37	4		4	FYB	5	39169813	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	718513	39169813	141745447	283	89698											
DAB2	1601	broad.mit.edu	37	chr5	39388916	39388916	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataccgatttcagtttgttAgtttggtcatctagaatcat	7	7	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39388916	T	T	39388916	2	4	86	1	0	0	0	0	0	0	0	1	4251	407	15	5		5	DAB2	5	39388916	Silent	SNP	A	TCGA-17-Z057-01A-01W-0747-08	219103	39388916	141526344	284	89699											
GHR	2690	broad.mit.edu	37	chr5	42467379	42467379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtgaaaaacaactaaaGgttttcccaaactcacactc	6	10	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42467379	T	T	42467379	1	4	86	0	1	0	0	0	0	0	0	0	6435	1015	35	2		2	GHR	5	42467379	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3078463	42467379	138447881	285	89700											
C5orf28	64417	broad.mit.edu	37	chr5	43454051	43454051	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctgcagtaaagcatgggtCttttcagtctcggatgccat	11	9	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43454051	G	G	43454051	3	3	86	1	0	0	0	0	1	0	0	0	2312	912	32	4	634	4	C5orf28	5	43454051	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	986672	43454051	137461209	286	89701											
PARP8	79668	broad.mit.edu	37	chr5	50117294	50117294	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatctcatcaagcatatccAtgagtatttaatttcatcat	3	9	4	1	rs140383747	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50117294	G	G	50117294	1	3	86	0	1	0	0	0	0	0	0	0	11559	232	8	5		5	PARP8	5	50117294	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	6663243	50117294	130797966	287	89702											
CDC20B	166979	broad.mit.edu	37	chr5	54415868	54415868	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtacagctggggtaggaTgttaaagaaattacaaccat	10	7	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54415868	A	A	54415868	1	1	86	0	1	0	0	0	0	0	0	0	3090	1479	51	5		5	CDC20B	5	54415868	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	4298574	54415868	126499392	288	89703											
PDE4D	5144	broad.mit.edu	37	chr5	58571045	58571045	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacaaaataaagaataaaaGagccgccaatactgccttct	6	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58571045	C	C	58571045	1	2	86	0	1	0	0	0	0	0	0	0	11736	957	33	4		4	PDE4D	5	58571045	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4155177	58571045	122344215	289	89704											
DEPDC1B	55789	broad.mit.edu	37	chr5	59894899	59894899	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttataaagaatatcctttTacctgcttcagtttcttctt	4	9	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59894899	C	C	59894899	1	2	86	0	1	0	0	0	0	0	0	0	4480	1769	61	5		5	DEPDC1B	5	59894899	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1323854	59894899	121020361	290	89705											
ERBB2IP	55914	broad.mit.edu	37	chr5	65346683	65346683	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagaataacagcaattgttCttctccatctcggatgtctg	7	10	5	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65346683	G	G	65346683	3	3	86	1	0	0	0	0	1	0	0	0	5249	913	32	4	2046	4	ERBB2IP	5	65346683	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5451784	65346683	115568577	291	89706											
SFRS12	140890	broad.mit.edu	37	chr5	65473538	65473538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatggttctttattgcatAcaaatggttttagactgaaa	8	4	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65473538	G	G	65473538	1	3	86	0	1	0	0	0	0	0	0	0	14280	406	14	5		5	SFRS12	5	65473538	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	126855	65473538	115441722	292	89707											
RGNEF	64283	broad.mit.edu	37	chr5	73090311	73090311	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgcttctttctttgcAcgtctttccataaagtagaa	5	12	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73090311	G	G	73090311	1	3	86	0	1	0	0	0	0	0	0	0	13391	174	6	5		5	RGNEF	5	73090311	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	7616773	73090311	107824949	293	89708											
GCNT4	51301	broad.mit.edu	37	chr5	74325216	74325216	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catatttccactggattgaaGacttcagaaggtccgacaag	9	9	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74325216	C	C	74325216	3	2	86	1	0	0	0	0	1	0	0	0	6365	942	33	4	718	4	GCNT4	5	74325216	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1234905	74325216	106590044	294	89709											
IQGAP2	10788	broad.mit.edu	37	chr5	75858224	75858224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttttaatctctttaggtgGatggaagtttgcttagttga	10	3	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75858224	T	T	75858224	3	4	86	1	0	0	0	0	1	0	0	0	7885	1183	41	3	160	3	IQGAP2	5	75858224	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1533008	75858224	105057036	295	89710											
IQGAP2	10788	broad.mit.edu	37	chr5	75896503	75896503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtggaaagcaggtggcCacgactcctctttctgctga	12	12	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75896503	A	A	75896503	1	1	86	0	1	0	0	0	0	0	0	0	7885	609	21	2		2	IQGAP2	5	75896503	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	38279	75896503	105018757	296	89711											
CMYA5	202333	broad.mit.edu	37	chr5	79031334	79031334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttaaaactgctgatgaacCcagaggtactttagtaaaat	7	7	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79031334	T	T	79031334	3	4	86	1	0	0	0	0	1	0	0	0	3622	623	22	4	6752	4	CMYA5	5	79031334	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3134831	79031334	101883926	297	89712											
CAST	831	broad.mit.edu	37	chr5	96062591	96062591	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttcattgtactagggcatCtctgtttactaacggttaca	8	8	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96062591	G	G	96062591	1	3	86	0	1	0	0	0	0	0	0	0	2710	928	32	4		4	CAST	5	96062591	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	17031257	96062591	84852669	298	89713											
FBXL17	64839	broad.mit.edu	37	chr5	107216863	107216863	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctattgtcatgctgtatcGcccaatggctatcagtgctg	9	11	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107216863	A	A	107216863	4	1	86	1	0	0	0	0	0	1	0	0	5770	1095	38	4	273	4	FBXL17	5	107216863	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	11154272	107216863	73698397	299	89714											
WDR36	134430	broad.mit.edu	37	chr5	110448812	110448812	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttggttaataagtgctgcgAtggattgctctattaggact	12	5	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110448812	G	G	110448812	3	3	86	1	0	0	0	0	1	0	0	0	17417	333	12	5	1986	5	WDR36	5	110448812	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	3231949	110448812	70466448	300	89715											
ZNF608	57507	broad.mit.edu	37	chr5	124079702	124079702	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cataaagtgtaaggcacacaGaggcacacccccacacaccc	7	16	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124079702	A	A	124079702	1	1	86	0	1	0	0	0	0	0	0	0	18161	957	33	4		4	ZNF608	5	124079702	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	13630890	124079702	56835558	301	89716											
FBN2	2201	broad.mit.edu	37	chr5	127697637	127697637	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttatttgttttatttccctCtttcttctctgtgacatagt	5	8	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127697637	G	G	127697637	1	3	86	0	1	0	0	0	0	0	0	0	5760	928	32	4		4	FBN2	5	127697637	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3617935	127697637	53217623	302	89717											
SEC24A	10802	broad.mit.edu	37	chr5	134022559	134022559	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgaaactggatacttgaattCagtttgccagagtttgttag	10	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134022559	A	A	134022559	4	1	86	1	0	0	0	0	0	1	0	0	14107	838	29	3	1609	3	SEC24A	5	134022559	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6324922	134022559	46892701	303	89718											
BRD8	10902	broad.mit.edu	37	chr5	137480931	137480931	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcttcagaaatggactgctGaacctgttaagggacaaacc	11	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137480931	A	A	137480931	2	1	86	1	0	0	0	0	0	0	0	1	1515	1281	45	4		4	BRD8	5	137480931	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3458372	137480931	43434329	304	89719											
PCDHA9	9752	broad.mit.edu	37	chr5	140230315	140230316	+	Missense_Mutation	DNP	GG	TC	TC													ctggtgtgttctagcgcggtGgggagttggtcgtactcgca							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	140230316	TC	TC	140230315	3	4	86	1	0	0	0	0	1	0	0	0	11625	1335	47	2	2237	2	PCDHA9	5	140230315	Missense_Mutation	DNP	GG	TCGA-17-Z057-01A-01W-0747-08	2749384	140230315	40684945	305	89720											
PCDHB10	56126	broad.mit.edu	37	chr5	140572961	140572961	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcaacgcggaagtatcctAttcattttttgatgcctcag	8	9	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140572961	G	G	140572961	3	3	86	1	0	0	0	0	1	0	0	0	11629	449	16	5	838	5	PCDHB10	5	140572961	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	342646	140572961	40342299	306	89721											
PCDHB15	56121	broad.mit.edu	37	chr5	140626753	140626753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtgggcgccacagaccGcggcttcccggcgctgagca	15	17	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140626753	A	A	140626753	3	1	86	1	0	0	0	0	1	0	0	0	11634	1087	38	4	1609	4	PCDHB15	5	140626753	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	53792	140626753	40288507	307	89722											
PCDHGA3	56112	broad.mit.edu	37	chr5	140724478	140724479	+	Missense_Mutation	DNP	AT	TA	TA													gaaaatcgctgagattttccAtcttaactcagtgagtggag							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	140724479	TA	TA	140724478	3	4	86	1	0	0	0	0	1	0	0	0	11649	217	8	5	880	5	PCDHGA3	5	140724478	Missense_Mutation	DNP	AT	TCGA-17-Z057-01A-01W-0747-08	97725	140724478	40190782	308	89723											
PCDHGB4	8641	broad.mit.edu	37	chr5	140769598	140769598	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccttgcgcctgcgacgctCctccagccccgcctcctgga	10	20	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140769598	G	G	140769598	3	3	86	1	0	0	0	0	1	0	0	0	11659	855	30	4	2149	4	PCDHGB4	5	140769598	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	45120	140769598	40145662	309	89724											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774000	140774000	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagcgacagcggggacccGcccctcagcagcaacatgtc	12	17	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140774000	A	A	140774000	2	1	86	1	0	0	0	0	0	0	0	1	11654	1074	38	4		4	PCDHGA8	5	140774000	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4402	140774000	40141260	310	89725											
PCDHGA9	56107	broad.mit.edu	37	chr5	140783387	140783387	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaattaatgaaaaacaatctCtgctattccagcttaatgaa	4	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140783387	G	G	140783387	3	3	86	1	0	0	0	0	1	0	0	0	11655	912	32	4	870	4	PCDHGA9	5	140783387	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	9387	140783387	40131873	311	89726											
ARHGAP26	23092	broad.mit.edu	37	chr5	142152228	142152228	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gactgggggaagcattacctCtgagtcacacagctctagca	11	11	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142152228	T	T	142152228	1	4	86	0	1	0	0	0	0	0	0	0	877	928	32	4		4	ARHGAP26	5	142152228	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1368841	142152228	38763032	312	89727											
PPP2R2B	5521	broad.mit.edu	37	chr5	145969332	145969332	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcccaaacctattgggtttGacaaaagtttcttagaactg	8	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145969332	C	C	145969332	1	2	86	0	1	0	0	0	0	0	0	0	12486	1305	45	4		4	PPP2R2B	5	145969332	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3817104	145969332	34945928	313	89728											
CAMK2A	815	broad.mit.edu	37	chr5	149602821	149602821	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagaggagatgcaaccggGggcctcctgtctcactttct	13	12	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149602821	A	A	149602821	1	1	86	0	1	0	0	0	0	0	0	0	2625	1247	43	4		4	CAMK2A	5	149602821	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3633489	149602821	31312439	314	89729											
EBF1	1879	broad.mit.edu	37	chr5	158139124	158139124	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgatgccaagttcttctagcGaaacgtgcaggaacgcagga	12	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158139124	A	A	158139124	1	1	86	0	1	0	0	0	0	0	0	0	4920	1073	37	4		4	EBF1	5	158139124	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	8536303	158139124	22776136	315	89730											
IL12B	3593	broad.mit.edu	37	chr5	158750382	158750382	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctgtaagctccaggaActctgggactgtgttttatt	11	9	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158750382	G	G	158750382	1	3	86	0	1	0	0	0	0	0	0	0	7695	58	2	5		5	IL12B	5	158750382	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	611258	158750382	22164878	316	89731											
WWC1	23286	broad.mit.edu	37	chr5	167833266	167833266	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgaagctcaggctgtcttGagagaaacaaaagccatcaa	10	8	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167833266	C	C	167833266	3	2	86	1	0	0	0	0	1	0	0	0	17538	1281	45	4	676	4	WWC1	5	167833266	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	9082884	167833266	13081994	317	89732											
DOCK2	1794	broad.mit.edu	37	chr5	169463408	169463408	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtttcttattcctatctcaGggtacccagatactagacag	7	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169463408	C	C	169463408	1	2	86	0	1	0	0	0	0	0	0	0	4727	1015	35	4		4	DOCK2	5	169463408	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1630142	169463408	11451852	318	89733											
HK3	3101	broad.mit.edu	37	chr5	176311026	176311026	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagccccaaagcacccctaGaacaggctcctacctgtctg	7	17	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176311026	A	A	176311026	1	1	86	0	1	0	0	0	0	0	0	0	7259	957	33	4		4	HK3	5	176311026	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6847618	176311026	4604234	319	89734											
ZNF454	285676	broad.mit.edu	37	chr5	178391653	178391653	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttatttttaatgtctttCagactggatgactatgcctg	7	6	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178391653	T	T	178391653	1	4	86	0	1	0	0	0	0	0	0	0	18050	841	29	4		4	ZNF454	5	178391653	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2080627	178391653	2523607	320	89735											
MGAT4B	11282	broad.mit.edu	37	chr5	179227083	179227083	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccagctgcgaggtgagcaGagaggggctggggctgagga	20	8	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179227083	A	A	179227083	1	1	86	0	1	0	0	0	0	0	0	0	9639	957	33	4		4	MGAT4B	5	179227083	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	835430	179227083	1688177	321	89736											
GFPT2	9945	broad.mit.edu	37	chr5	179743458	179743458	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttcctccaaaacttgccGcgtctgaagccaacaagcaa	7	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179743458	A	A	179743458	3	1	86	1	0	0	0	0	1	0	0	0	6410	1086	38	4	920	4	GFPT2	5	179743458	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	516375	179743458	1171802	322	89737											
ELOVL2	54898	broad.mit.edu	37	chr6	10989798	10989798	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggagaatcacttgaacccaGaaggcggaggttgcagtgag	15	7	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10989798	A	A	10989798	1	1	86	0	1	0	0	0	0	0	0	0	5116	957	33	4		4	ELOVL2	6	10989798	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08		10989798	160125269	323	89738											
HIVEP1	3096	broad.mit.edu	37	chr6	12122360	12122360	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacctcactgtcaagacgaGgaagcattgattcccccaaa	8	12	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12122360	A	A	12122360	3	1	86	1	0	0	0	0	1	0	0	0	7253	1001	35	4	2342	4	HIVEP1	6	12122360	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1132562	12122360	158992707	324	89739											
BTN2A2	10385	broad.mit.edu	37	chr6	26390120	26390121	+	Intron	DNP	GG	TT	TT													tctccatctaaggtttctgaGggagaagccaacagaacagg							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26390121	TT	TT	26390120	1	4	86	0	1	0	0	0	0	0	0	0	1571	1015	35	2		2	BTN2A2	6	26390120	Intron	DNP	GG	TCGA-17-Z057-01A-01W-0747-08	14267760	26390120	144724947	325	89740											
ZNF322A	79692	broad.mit.edu	37	chr6	26637642	26637642	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctttttcactcacattacaGacaaacggtttttcaccaat	3	12	3	1	rs146500157	byFrequency;by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26637642	A	A	26637642	2	1	86	1	0	0	0	0	0	0	0	1	17967	929	33	4		4	ZNF322A	6	26637642	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	247522	26637642	144477425	326	89741											
GPX6	257202	broad.mit.edu	37	chr6	28473416	28473416	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaccacaaccctagacaTgagccccactgctttcagag	6	16	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28473416	C	C	28473416	1	2	86	0	1	0	0	0	0	0	0	0	6810	1479	51	5		5	GPX6	6	28473416	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1835774	28473416	142641651	327	89742											
GPX5	2880	broad.mit.edu	37	chr6	28499817	28499817	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtttaactttggcctaccGtgatgagcgtctggcagttt	12	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28499817	A	A	28499817	1	1	86	0	1	0	0	0	0	0	0	0	6809	1160	40	4		4	GPX5	6	28499817	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	26401	28499817	142615250	328	89743											
UBD	10537	broad.mit.edu	37	chr6	29523863	29523863	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggaggtgcctctttgcctCatcacctgactccacaagaa	9	13	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29523863	T	T	29523863	3	4	86	1	0	0	0	0	1	0	0	0	16969	835	29	4	209	4	UBD	6	29523863	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1024046	29523863	141591204	329	89744											
LTA	4049	broad.mit.edu	37	chr6	31540595	31540595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccttctggggctgctgCtggttctgctgcctggggcc	14	14	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31540595	A	A	31540595	3	1	86	1	0	0	0	0	1	0	0	0	9155	796	28	3	78	3	LTA	6	31540595	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2016732	31540595	139574472	330	89745											
MSH5	4439	broad.mit.edu	37	chr6	31729099	31729099	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaatggaggaggatgaagGagcatgacagtgaggctggg	19	3	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31729099	T	T	31729099	1	4	86	0	1	0	0	0	0	0	0	0	9967	1189	41	3		3	MSH5	6	31729099	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	188504	31729099	139385968	331	89746											
TNXB	7148	broad.mit.edu	37	chr6	32018016	32018016	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggtggcatctgtcacggtCagctcccccaggcgaggctt	15	13	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32018016	T	T	32018016	2	4	86	1	0	0	0	0	0	0	0	1	16469	813	29	4		4	TNXB	6	32018016	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	288917	32018016	139097051	332	89747											
TNXB	7148	broad.mit.edu	37	chr6	32039851	32039851	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttgtacttgcgggagggttCcaggtcagggatagtgacct	15	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32039851	G	G	32039851	3	3	86	1	0	0	0	0	1	0	0	0	16469	864	30	4	9935	4	TNXB	6	32039851	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	21835	32039851	139075216	333	89748											
ITPR3	3710	broad.mit.edu	37	chr6	33635559	33635560	+	Intron	INS	-	C	C													tgtgacccccagcctgtctgINScccccccaggagcacattgc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33635560	C	C	33635559	6	5	86	0	1	1	1	0	0	0	0	0	7992	1334	46	0		0	ITPR3	6	33635559	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	1595708	33635559	137479508	334	89749											
DNAH8	1769	broad.mit.edu	37	chr6	38862647	38862647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaattgcagacaggtgcgtGttgcggcactagagtttaaa	13	6	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38862647	T	T	38862647	1	4	86	0	1	0	0	0	0	0	0	0	4647	1392	48	3		3	DNAH8	6	38862647	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5227088	38862647	132252420	335	89750											
KIF6	221458	broad.mit.edu	37	chr6	39328278	39328278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatctccaccttcagggCtttcaggcgagtgaacattg	10	12	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39328278	A	A	39328278	3	1	86	1	0	0	0	0	1	0	0	0	8378	797	28	3	493	3	KIF6	6	39328278	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	465631	39328278	131786789	336	89751											
TJAP1	93643	broad.mit.edu	37	chr6	43472676	43472676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccagtcaggcagcgccGggcgccccttggctgaggat	15	15	1	1	rs151036953		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43472676	T	T	43472676	3	4	86	1	0	0	0	0	1	0	0	0	16051	1116	39	1	787	1	TJAP1	6	43472676	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4144398	43472676	127642391	337	89752											
TMEM63B	55362	broad.mit.edu	37	chr6	44121558	44121558	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgcctcttctggctgctCttcttttccaccatgcgcac	6	17	5	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44121558	T	T	44121558	2	4	86	1	0	0	0	0	0	0	0	1	16314	900	32	4		4	TMEM63B	6	44121558	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	648882	44121558	126993509	338	89753											
TFAP2B	7021	broad.mit.edu	37	chr6	50803742	50803742	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcaggatcgaaacttggtCacctttatggcaattttttc	7	9	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50803742	G	G	50803742	1	3	86	0	1	0	0	0	0	0	0	0	15911	841	29	4		4	TFAP2B	6	50803742	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6682184	50803742	120311325	339	89754											
COL21A1	81578	broad.mit.edu	37	chr6	55925682	55925682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactgtgaaagaagcagaaTacatacgggcttcccatcca	8	10	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55925682	C	C	55925682	1	2	86	0	1	0	0	0	0	0	0	0	3712	1421	49	5		5	COL21A1	6	55925682	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	5121940	55925682	115189385	340	89755											
KIAA1586	57691	broad.mit.edu	37	chr6	56918096	56918096	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagacctttatctgatattGagggggcaagagaattacag	11	6	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56918096	C	C	56918096	3	2	86	1	0	0	0	0	1	0	0	0	8315	1291	45	4	813	4	KIAA1586	6	56918096	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	992414	56918096	114196971	341	89756											
OOEP	441161	broad.mit.edu	37	chr6	74078997	74078997	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttcacccgattctgtacaCggggccgcccgaaaacggtg	11	14	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74078997	G	G	74078997	3	3	86	1	0	0	0	0	1	0	0	0	10964	536	19	4	155	4	OOEP	6	74078997	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	17160901	74078997	97036070	342	89757											
DDX43	55510	broad.mit.edu	37	chr6	74116036	74116036	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attacaggcgtgagccactgCgcccagcaaaagatgtactt	10	11	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74116036	T	T	74116036	1	4	86	0	1	0	0	0	0	0	0	0	4396	783	27	4		4	DDX43	6	74116036	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	37039	74116036	96999031	343	89758											
COX7A2	1347	broad.mit.edu	37	chr6	75949987	75949987	+	Intron	DEL	A	-	-													atcattactattacttttctAtaaaccttcaaacattccaa							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75949987	-	-	75949987	6	5	86	0	1	1	0	1	0	0	0	0	3812	464	16	0		0	COX7A2	6	75949987	Intron	DEL	A	TCGA-17-Z057-01A-01W-0747-08	1833951	75949987	95165080	344	89759											
MYO6	4646	broad.mit.edu	37	chr6	76567043	76567043	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attagaatttgttcttaaatCttttctcctttgtaactcat	3	7	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76567043	T	T	76567043	1	4	86	0	1	0	0	0	0	0	0	0	10175	928	32	4		4	MYO6	6	76567043	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	617056	76567043	94548024	345	89760											
PHIP	55023	broad.mit.edu	37	chr6	79697862	79697862	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcaataaatgcgaagaatGaaactcatatttaaaaaaat	4	4	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79697862	A	A	79697862	1	1	86	0	1	0	0	0	0	0	0	0	11937	1305	45	4		4	PHIP	6	79697862	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3130819	79697862	91417205	346	89761											
ME1	4199	broad.mit.edu	37	chr6	84117633	84117633	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaagtcctatagagaaaaAacacacacacacacacaaca	4	13	0	1	rs148168195	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84117633	C	C	84117633	1	2	86	0	1	0	0	0	0	0	0	0	9510	29	1	5		5	ME1	6	84117633	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	4419771	84117633	86997434	347	89762											
KIAA1009	22832	broad.mit.edu	37	chr6	84913699	84913699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatataattgatatatatacCtgtttgggcacacttatttt	5	5	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84913699	A	A	84913699	3	1	86	1	0	0	0	0	1	0	0	0	8273	695	24	2	3608	2	KIAA1009	6	84913699	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	796066	84913699	86201368	348	89763											
CNR1	1268	broad.mit.edu	37	chr6	88854043	88854043	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctcagacgtgtggatgatGatgctcttctgggtgccacg	13	10	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88854043	T	T	88854043	2	4	86	1	0	0	0	0	0	0	0	1	3663	1280	45	3		3	CNR1	6	88854043	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3940344	88854043	82261024	349	89764											
BEND3	57673	broad.mit.edu	37	chr6	107390755	107390755	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtcggcaccgggcaccTcgaagtcaggctgggggatc	17	12	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107390755	G	G	107390755	3	3	86	1	0	0	0	0	1	0	0	0	1404	1551	54	5	850	5	BEND3	6	107390755	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	18536712	107390755	63724312	350	89765											
SEC63	11231	broad.mit.edu	37	chr6	108215098	108215098	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggactgctccttttcaaataCttcctggggggcggcaagaa	12	10	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108215098	G	G	108215098	3	3	86	1	0	0	0	0	1	0	0	0	14118	565	20	4	866	4	SEC63	6	108215098	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	824343	108215098	62899969	351	89766											
MICAL1	64780	broad.mit.edu	37	chr6	109775325	109775325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggaagctgctcagcacGtcctggcacagctgggcctg	13	14	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109775325	T	T	109775325	3	4	86	1	0	0	0	0	1	0	0	0	9662	1136	40	3	3224	3	MICAL1	6	109775325	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1560227	109775325	61339742	352	89767											
SLC22A16	85413	broad.mit.edu	37	chr6	110778227	110778227	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggactctctggaatctgcaaGagaagaaaagctaattatta	9	6	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110778227	T	T	110778227	1	4	86	0	1	0	0	0	0	0	0	0	14560	957	33	3		3	SLC22A16	6	110778227	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1002902	110778227	60336840	353	89768											
LAMA4	3910	broad.mit.edu	37	chr6	112535120	112535120	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgagagaaatgaggtaagtCaggcaacctgcaagaactga	12	6	1	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112535120	A	A	112535120	1	1	86	0	1	0	0	0	0	0	0	0	8680	841	29	3		3	LAMA4	6	112535120	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1756893	112535120	58579947	354	89769											
LAMA4	3910	broad.mit.edu	37	chr6	112535187	112535187	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacaagaagtgttcatgttgGagccctggcttctctggctc	11	10	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112535187	T	T	112535187	1	4	86	0	1	0	0	0	0	0	0	0	8680	1189	41	3		3	LAMA4	6	112535187	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	67	112535187	58579880	355	89770											
HDAC2	3066	broad.mit.edu	37	chr6	114277315	114277315	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttaacttcacagctccaGctaagaagtagaaacaagat	8	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114277315	A	A	114277315	3	1	86	1	0	0	0	0	1	0	0	0	7074	985	34	4	1147	4	HDAC2	6	114277315	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1742128	114277315	56837752	356	89771											
HS3ST5	222537	broad.mit.edu	37	chr6	114378979	114378979	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttctggaacctcctctgtGataaaatatgctgggctctt	8	10	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114378979	A	A	114378979	2	1	86	1	0	0	0	0	0	0	0	1	7435	1280	45	4		4	HS3ST5	6	114378979	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	101664	114378979	56736088	357	89772											
TRDN	10345	broad.mit.edu	37	chr6	123539799	123539799	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgaccagagctctctcCagggcggtctgcaggagtga	14	11	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123539799	T	T	123539799	3	4	86	1	0	0	0	0	1	0	0	0	16592	603	21	4	56	4	TRDN	6	123539799	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	9160820	123539799	47575268	358	89773											
THEMIS	387357	broad.mit.edu	37	chr6	128134122	128134122	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggtgtttcggagggcgaGgtgggggatgtgaggctgag	24	3	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128134122	A	A	128134122	3	1	86	1	0	0	0	0	1	0	0	0	15983	1000	35	4	394	4	THEMIS	6	128134122	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4594323	128134122	42980945	359	89774											
PTPRK	5796	broad.mit.edu	37	chr6	128399844	128399844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcatatatagaaaaaaaCatagtacagtctgtataggg	8	4	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128399844	A	A	128399844	1	1	86	0	1	0	0	0	0	0	0	0	12913	493	17	3		3	PTPRK	6	128399844	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	265722	128399844	42715223	360	89775											
TAAR5	9038	broad.mit.edu	37	chr6	132910078	132910078	+	Frame_Shift_Del	DEL	C	-	-													aatgcccagggtcttggcagCttttctctcatgcttggcag							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132910078	-	-	132910078	7	5	86	1	0	1	0	1	0	0	0	0	15610	797	28	0	269	0	TAAR5	6	132910078	Frame_Shift_Del	DEL	C	TCGA-17-Z057-01A-01W-0747-08	4510234	132910078	38204989	361	89776											
MTHFD1L	25902	broad.mit.edu	37	chr6	151293234	151293234	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttagttgttgtagaatattGaagaaatctaaaagctgatg	9	2	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151293234	T	T	151293234	1	4	86	0	1	0	0	0	0	0	0	0	10022	1305	45	3		3	MTHFD1L	6	151293234	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	18383156	151293234	19821833	362	89777											
SYNE1	23345	broad.mit.edu	37	chr6	152464792	152464792	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtctagctccggccccGtgggagttttgctgcgaatg	15	10	1	0	rs147814237		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152464792	A	A	152464792	3	1	86	1	0	0	0	0	1	0	0	0	15564	1145	40	4	1344	4	SYNE1	6	152464792	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1171558	152464792	18650275	363	89778											
SYNE1	23345	broad.mit.edu	37	chr6	152673179	152673179	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taccttgtatttagataactGagcttttttctcatataatt	4	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152673179	A	A	152673179	4	1	86	1	0	0	0	0	0	1	0	0	15564	1299	45	4	15211	4	SYNE1	6	152673179	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	208387	152673179	18441888	364	89779											
RGS17	26575	broad.mit.edu	37	chr6	153344676	153344676	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaattaagttttaaacagtCaatggaaaagtgctatttgg	8	4	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153344676	A	A	153344676	1	1	86	0	1	0	0	0	0	0	0	0	13408	841	29	3		3	RGS17	6	153344676	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	671497	153344676	17770391	365	89780											
ZDHHC14	79683	broad.mit.edu	37	chr6	157963722	157963722	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaccagcttcagcgacccCggagtcctcccacgagccac	9	20	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157963722	T	T	157963722	2	4	86	1	0	0	0	0	0	0	0	1	17730	639	23	4		4	ZDHHC14	6	157963722	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4619046	157963722	13151345	366	89781											
TULP4	56995	broad.mit.edu	37	chr6	158902136	158902136	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agactttgtcagctacccatCagccggcaacgagcggctgc	11	14	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158902136	T	T	158902136	3	4	86	1	0	0	0	0	1	0	0	0	16902	838	29	4	1331	4	TULP4	6	158902136	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	938414	158902136	12212931	367	89782											
PNLDC1	154197	broad.mit.edu	37	chr6	160222124	160222124	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgtcattgctcgtggaatGagatgcctgtttgttcacag	12	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160222124	C	C	160222124	1	2	86	0	1	0	0	0	0	0	0	0	12243	1305	45	4		4	PNLDC1	6	160222124	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1319988	160222124	10892943	368	89783											
MAP3K4	4216	broad.mit.edu	37	chr6	161519344	161519344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccgacgcgcggagccatGgcagccctgctgctgctgct	13	16	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161519344	T	T	161519344	3	4	86	1	0	0	0	0	1	0	0	0	9344	1348	47	2	3625	2	MAP3K4	6	161519344	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1297220	161519344	9595723	369	89784											
UNC93A	54346	broad.mit.edu	37	chr6	167711436	167711436	+	Frame_Shift_Del	DEL	C	-	-													ccactctgacttcatagagaCccttccagaagagcagctca							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167711436	-	-	167711436	7	5	86	1	0	1	0	1	0	0	0	0	17122	507	18	0	517	0	UNC93A	6	167711436	Frame_Shift_Del	DEL	C	TCGA-17-Z057-01A-01W-0747-08	6192092	167711436	3403631	370	89785											
FAM120B	84498	broad.mit.edu	37	chr6	170657264	170657264	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcctagtttgaaaatattAtggctgaaccaagagccaga	9	8	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170657264	G	G	170657264	2	3	86	1	0	0	0	0	0	0	0	1	5463	446	16	5		5	FAM120B	6	170657264	Silent	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2945828	170657264	457803	371	89786											
SDK1	221935	broad.mit.edu	37	chr7	4167177	4167206	+	Intron	DEL	AAATGGGAGCATGTGCTATTCCCCCAAAGC	-	-													gcttaaagagtgggctggggAaatgggagcatgtgctattc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4167206	-	-	4167177	6	5	86	0	1	1	0	1	0	0	0	0	14081	261	9	0		0	SDK1	7	4167177	Intron	DEL	AAATGGGAGCATGTGCTATTCCCCCAAAGC	TCGA-17-Z057-01A-01W-0747-08		4167177	154971486	372	89787											
ZDHHC4	55146	broad.mit.edu	37	chr7	6621957	6621958	+	Intron	INS	-	C	C													gtgctgcaaacaaggagaggINSccccccctgaggactttgta							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6621958	C	C	6621957	6	5	86	0	1	1	1	0	0	0	0	0	17743	1218	42	0		0	ZDHHC4	7	6621957	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	2454780	6621957	152516706	373	89788											
DGKB	1607	broad.mit.edu	37	chr7	14217603	14217603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgcatacttttaattaGtttgaggctatgccatatca	7	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14217603	T	T	14217603	1	4	86	0	1	0	0	0	0	0	0	0	4506	1044	36	3		3	DGKB	7	14217603	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7595646	14217603	144921060	374	89789											
AHR	196	broad.mit.edu	37	chr7	17382562	17382562	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtttcagaatggagttttAaatgaaacatatccagctga	8	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17382562	G	G	17382562	2	3	86	1	0	0	0	0	0	0	0	1	416	359	13	5		5	AHR	7	17382562	Silent	SNP	A	TCGA-17-Z057-01A-01W-0747-08	3164959	17382562	141756101	375	89790											
MACC1	346389	broad.mit.edu	37	chr7	20198442	20198442	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatagcctggcagattcgaGagtctttttaggtttggggt	13	5	1	2	rs149661432	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20198442	A	A	20198442	2	1	86	1	0	0	0	0	0	0	0	1	9231	929	33	4		4	MACC1	7	20198442	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2815880	20198442	138940221	376	89791											
ABCB5	340273	broad.mit.edu	37	chr7	20698371	20698371	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaagtacaagaaagtataGatctgtaatagattactcaa	7	4	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20698371	A	A	20698371	1	1	86	0	1	0	0	0	0	0	0	0	44	957	33	4		4	ABCB5	7	20698371	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	499929	20698371	138440292	377	89792											
ABCB5	340273	broad.mit.edu	37	chr7	20721220	20721220	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accctaaaggatggaatgctGgcggagaaaggagcacatgc	14	8	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20721220	A	A	20721220	2	1	86	1	0	0	0	0	0	0	0	1	44	1335	47	4		4	ABCB5	7	20721220	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	22849	20721220	138417443	378	89793											
PDE1C	5137	broad.mit.edu	37	chr7	31890312	31890312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgtagtcatggatggcaGctgagaagattatagcaaag	13	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31890312	T	T	31890312	3	4	86	1	0	0	0	0	1	0	0	0	11729	971	34	3	1150	3	PDE1C	7	31890312	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	11169092	31890312	127248351	379	89794											
NPSR1	387129	broad.mit.edu	37	chr7	34790057	34790057	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgacggggctctggtgtgacGaagtcattgtctgaggctgc	16	9	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34790057	A	A	34790057	1	1	86	0	1	0	0	0	0	0	0	0	10695	1073	37	4		4	NPSR1	7	34790057	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2899745	34790057	124348606	380	89795											
URGCP	55665	broad.mit.edu	37	chr7	43958709	43958709	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagatggctttgtgctgtgtCagttcattgctggggggaca	15	6	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43958709	G	G	43958709	1	3	86	0	1	0	0	0	0	0	0	0	17152	841	29	4		4	URGCP	7	43958709	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	9168652	43958709	115179954	381	89796											
POLD2	5425	broad.mit.edu	37	chr7	44157666	44157666	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactcccactccactgcctGggacacgaggggtacagact	10	15	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44157666	A	A	44157666	1	1	86	0	1	0	0	0	0	0	0	0	12286	1363	47	4		4	POLD2	7	44157666	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	198957	44157666	114980997	382	89797											
RABGEF1	27342	broad.mit.edu	37	chr7	66270236	66270236	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaccaagaatgagccggcGtcagcggatgacttcctccc	10	14	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66270236	A	A	66270236	2	1	86	1	0	0	0	0	0	0	0	1	13074	1132	40	4		4	RABGEF1	7	66270236	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	22112570	66270236	92868427	383	89798											
POR	5447	broad.mit.edu	37	chr7	75552589	75552589	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgcttggaagacctcattCatgaaattgccttcccaagg	8	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75552589	T	T	75552589	1	4	86	0	1	0	0	0	0	0	0	0	12352	841	29	4		4	POR	7	75552589	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	9282353	75552589	83586074	384	89799											
MAGI2	9863	broad.mit.edu	37	chr7	77708193	77708193	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggagaactgatgtagtttTataaataaccataagcattt	8	4	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77708193	C	C	77708193	1	2	86	0	1	0	0	0	0	0	0	0	9283	1769	61	5		5	MAGI2	7	77708193	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2155604	77708193	81430470	385	89800											
MAGI2	9863	broad.mit.edu	37	chr7	77754906	77754906	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcaactagaaagagggcaAacctacagcaaccccgcttg	8	13	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77754906	T	T	77754906	1	4	86	0	1	0	0	0	0	0	0	0	9283	29	1	5		5	MAGI2	7	77754906	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	46713	77754906	81383757	386	89801											
CD36	948	broad.mit.edu	37	chr7	80290638	80290638	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttccatttttatcaaaacGtattcctatatcattatttt	1	7	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80290638	C	C	80290638	1	2	86	0	1	0	0	0	0	0	0	0	3037	1160	40	4		4	CD36	7	80290638	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2535732	80290638	78848025	387	89802											
KIAA1324L	222223	broad.mit.edu	37	chr7	86527007	86527007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttttaacccattcaatcCactctaatcaacaccagaat	2	13	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86527007	T	T	86527007	1	4	86	0	1	0	0	0	0	0	0	0	8294	609	21	4		4	KIAA1324L	7	86527007	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6236369	86527007	72611656	388	89803											
DMTF1	9988	broad.mit.edu	37	chr7	86800322	86800322	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttgaagtttcagaaaatGatcagagctttgaagtgacc	9	6	3	6			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86800322	C	C	86800322	3	2	86	1	0	0	0	0	1	0	0	0	4632	1290	45	4	254	4	DMTF1	7	86800322	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	273315	86800322	72338341	389	89804											
ABCB1	5243	broad.mit.edu	37	chr7	87174182	87174182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctgtcttgggcttgtgatCcacggacactcctacgagtt	10	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87174182	A	A	87174182	3	1	86	1	0	0	0	0	1	0	0	0	40	855	30	3	1873	3	ABCB1	7	87174182	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	373860	87174182	71964481	390	89805											
SRI	6717	broad.mit.edu	37	chr7	87846386	87846386	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatcacaagtaacagctaaGataggaaacacaagagtata	7	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87846386	C	C	87846386	1	2	86	0	1	0	0	0	0	0	0	0	15267	957	33	4		4	SRI	7	87846386	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	672204	87846386	71292277	391	89806											
C7orf63	79846	broad.mit.edu	37	chr7	89900752	89900752	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaaaagtttttcttgcTgttgcttaataataaattac	4	4	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89900752	C	C	89900752	1	2	86	0	1	0	0	0	0	0	0	0	2434	1595	55	5		5	C7orf63	7	89900752	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2054366	89900752	69237911	392	89807											
TFPI2	7980	broad.mit.edu	37	chr7	93519512	93519512	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaattgttggcgttgccctCgcagcccccgtacaggaact	11	13	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93519512	T	T	93519512	3	4	86	1	0	0	0	0	1	0	0	0	15932	893	31	4	515	4	TFPI2	7	93519512	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3618760	93519512	65619151	393	89808											
SLC25A13	10165	broad.mit.edu	37	chr7	95849237	95849237	+	Intron	DEL	A	-	-													cacactaactaaatcaacagAggggccaactgagatgtttc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95849237	-	-	95849237	6	5	86	0	1	1	0	1	0	0	0	0	14589	319	11	0		0	SLC25A13	7	95849237	Intron	DEL	A	TCGA-17-Z057-01A-01W-0747-08	2329725	95849237	63289426	394	89809											
CYP3A7	1551	broad.mit.edu	37	chr7	99313707	99313707	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgattatcaggtgtcagTgacacagctggctctccgct	12	10	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99313707	A	A	99313707	1	1	86	0	1	0	0	0	0	0	0	0	4214	1711	59	5		5	CYP3A7	7	99313707	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3464470	99313707	59824956	395	89810											
C7orf43	55262	broad.mit.edu	37	chr7	99755238	99755238	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagactctagccctttgcctCtgcgctgccctgcccacctt	7	19	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99755238	G	G	99755238	1	3	86	0	1	0	0	0	0	0	0	0	2418	928	32	4		4	C7orf43	7	99755238	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	441531	99755238	59383425	396	89811											
ZAN	7455	broad.mit.edu	37	chr7	100388610	100388610	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcttgtgagtggcctgtgCggaaactacgacaagaaccg	15	9	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100388610	T	T	100388610	2	4	86	1	0	0	0	0	0	0	0	1	17640	776	27	4		4	ZAN	7	100388610	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	633372	100388610	58750053	397	89812											
MUC17	140453	broad.mit.edu	37	chr7	100696586	100696586	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttattcctgttccccaatCctaatggggtctctctgatg	7	13	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100696586	T	T	100696586	1	4	86	0	1	0	0	0	0	0	0	0	10068	870	30	4		4	MUC17	7	100696586	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	307976	100696586	58442077	398	89813											
RELN	5649	broad.mit.edu	37	chr7	103207175	103207175	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaagcaaatgccagagtatCccattgtcatttgaatactg	8	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103207175	T	T	103207175	2	4	86	1	0	0	0	0	0	0	0	1	13328	842	30	4		4	RELN	7	103207175	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2510589	103207175	55931488	399	89814											
RELN	5649	broad.mit.edu	37	chr7	103234728	103234728	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttatgccattcacttttaTaattatctgtcttcttggag	5	8	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103234728	G	G	103234728	1	3	86	0	1	0	0	0	0	0	0	0	13328	1421	49	5		5	RELN	7	103234728	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	27553	103234728	55903935	400	89815											
MET	4233	broad.mit.edu	37	chr7	116339633	116339633	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgcatattctccccacaGatagaagagcccagccagtg	8	14	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116339633	A	A	116339633	2	1	86	1	0	0	0	0	0	0	0	1	9578	933	33	4		4	MET	7	116339633	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	13104905	116339633	42799030	401	89816											
CAPZA2	830	broad.mit.edu	37	chr7	116550252	116550252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgattcaaattattttccCtaccttatttacagctgctg	4	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116550252	T	T	116550252	1	4	86	0	1	0	0	0	0	0	0	0	2667	696	24	4		4	CAPZA2	7	116550252	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	210619	116550252	42588411	402	89817											
METTL2B	55798	broad.mit.edu	37	chr7	128119565	128119565	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagccacctaccgaatactgGaggtaaccttttattgtctt	7	11	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128119565	C	C	128119565	3	2	86	1	0	0	0	0	1	0	0	0	9593	1175	41	4	566	4	METTL2B	7	128119565	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	11569313	128119565	31019098	403	89818											
FAM71F1	84691	broad.mit.edu	37	chr7	128370179	128370179	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagccctggcattcagcctCagggctgggtcagatcctgg	14	13	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128370179	T	T	128370179	1	4	86	0	1	0	0	0	0	0	0	0	5663	841	29	4		4	FAM71F1	7	128370179	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	250614	128370179	30768484	404	89819											
CALU	813	broad.mit.edu	37	chr7	128399895	128399895	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtttcattgatctagAagagtatattggtaagtctc	10	4	3	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128399895	G	G	128399895	3	3	86	1	0	0	0	0	1	0	0	0	2620	246	9	5	844	5	CALU	7	128399895	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	29716	128399895	30738768	405	89820											
UBN2	254048	broad.mit.edu	37	chr7	138969127	138969127	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcatccactggaactgttgGgaagaacagcttgagtggaa	12	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138969127	C	C	138969127	3	2	86	1	0	0	0	0	1	0	0	0	17019	1232	43	4	3534	4	UBN2	7	138969127	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	10569232	138969127	20169536	406	89821											
BRAF	673	broad.mit.edu	37	chr7	140477778	140477778	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctctggaaaagagtaattCacacaagctcacctgagtac	7	10	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140477778	G	G	140477778	1	3	86	0	1	0	0	0	0	0	0	0	1505	841	29	4		4	BRAF	7	140477778	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1508651	140477778	18660885	407	89822											
MGAM	8972	broad.mit.edu	37	chr7	141755366	141755366	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgtgtttcagttgggactCtcagctccttggctttacct	9	10	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141755366	T	T	141755366	3	4	86	1	0	0	0	0	1	0	0	0	9634	913	32	4	3429	4	MGAM	7	141755366	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1277588	141755366	17383297	408	89823											
CLCN1	1180	broad.mit.edu	37	chr7	143017687	143017687	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctctctctctgtctctaCatatatatatttttgtttgt	3	9	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143017687	T	T	143017687	1	4	86	0	1	0	0	0	0	0	0	0	3493	493	17	4		4	CLCN1	7	143017687	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1262321	143017687	16120976	409	89824											
NOBOX	135935	broad.mit.edu	37	chr7	144101641	144101641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagccacagcgctcgccCcccgtactgatttgagggtc	12	15	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144101641	A	A	144101641	1	1	86	0	1	0	0	0	0	0	0	0	10607	638	22	2		2	NOBOX	7	144101641	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1083954	144101641	15037022	410	89825											
GIMAP7	168537	broad.mit.edu	37	chr7	150210748	150210748	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtagtgagaaacgttggCggaacatactacttcactgg	11	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150210748	T	T	150210748	1	4	86	0	1	0	0	0	0	0	0	0	6448	783	27	4		4	GIMAP7	7	150210748	5'Flank	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6109107	150210748	8927915	411	89826											
AGAP3	116988	broad.mit.edu	37	chr7	150825706	150825706	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcggcaagtccctgaacaagGagtggaagaagaagtatgtg	15	6	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150825706	C	C	150825706	3	2	86	1	0	0	0	0	1	0	0	0	369	1175	41	4	1366	4	AGAP3	7	150825706	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	614958	150825706	8312957	412	89827											
NOM1	64434	broad.mit.edu	37	chr7	156746815	156746815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgagtgaacccaacatGgcttccatcagtgggcagct	12	10	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156746815	T	T	156746815	3	4	86	1	0	0	0	0	1	0	0	0	10625	1348	47	2	1141	2	NOM1	7	156746815	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5921109	156746815	2391848	413	89828											
NOM1	64434	broad.mit.edu	37	chr7	156752882	156752882	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccagggtacgcgtgcgacGcttgatctgcttcctaagtc	12	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156752882	A	A	156752882	1	1	86	0	1	0	0	0	0	0	0	0	10625	1102	38	4		4	NOM1	7	156752882	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6067	156752882	2385781	414	89829											
DLC1	10395	broad.mit.edu	37	chr8	12957380	12957380	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggagaaactgccattggtGagagctttggggaaagtgcc	17	6	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12957380	T	T	12957380	2	4	86	1	0	0	0	0	0	0	0	1	4590	1277	45	3		3	DLC1	8	12957380	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08		12957380	133406642	415	89830											
TUSC3	7991	broad.mit.edu	37	chr8	15508095	15508095	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaactatgcttttcttacAgtctgtacaaaaactggcca	5	9	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15508095	T	T	15508095	1	4	86	0	1	0	0	0	0	0	0	0	16904	203	7	5		5	TUSC3	8	15508095	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2550715	15508095	130855927	416	89831											
MTUS1	57509	broad.mit.edu	37	chr8	17601265	17601265	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaccgcaggagtcaggcttgGatatattcctacctgaggtg	12	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17601265	C	C	17601265	3	2	86	1	0	0	0	0	1	0	0	0	10059	1174	41	4	2048	4	MTUS1	8	17601265	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2093170	17601265	128762757	417	89832											
XPO7	23039	broad.mit.edu	37	chr8	21827146	21827146	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtttagtgatgtgctaGtaatagtcaaatgtacgtgt	11	3	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21827146	C	C	21827146	1	2	86	0	1	0	0	0	0	0	0	0	17576	1044	36	4		4	XPO7	8	21827146	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4225881	21827146	124536876	418	89833											
PIWIL2	55124	broad.mit.edu	37	chr8	22168593	22168593	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgggatatttaaattgtGagaaatactaaaagctcttg	9	3	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22168593	A	A	22168593	1	1	86	0	1	0	0	0	0	0	0	0	12053	1305	45	4		4	PIWIL2	8	22168593	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	341447	22168593	124195429	419	89834											
TNFRSF10D	8793	broad.mit.edu	37	chr8	23003366	23003366	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccagtggaactggcagctGattcatttttgcacttgatg	10	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23003366	A	A	23003366	3	1	86	1	0	0	0	0	1	0	0	0	16406	1294	45	4	629	4	TNFRSF10D	8	23003366	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	834773	23003366	123360656	420	89835											
TMEM66	51669	broad.mit.edu	37	chr8	29924396	29924396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcctgtaaaagcactgcCaaaaccagaagttgcaccat	7	11	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29924396	A	A	29924396	3	1	86	1	0	0	0	0	1	0	0	0	16318	594	21	2	292	2	TMEM66	8	29924396	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6921030	29924396	116439626	421	89836											
BRF2	55290	broad.mit.edu	37	chr8	37707163	37707163	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtacctcggagattgccctCgtcgctgaaggtagtggtaa	13	9	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37707163	A	A	37707163	4	1	86	1	0	0	0	0	0	1	0	0	1520	893	31	3	1136	3	BRF2	8	37707163	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	7782767	37707163	108656859	422	89837											
DDHD2	23259	broad.mit.edu	37	chr8	38091901	38091901	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttcttttccccttttcaAtccttgaaaggaaaaggttg	6	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38091901	G	G	38091901	1	3	86	0	1	0	0	0	0	0	0	0	4360	116	4	5		5	DDHD2	8	38091901	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	384738	38091901	108272121	423	89838											
ADAM2	2515	broad.mit.edu	37	chr8	39694772	39694772	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttattagaacaatgcccatCatttcagagcgtgttttatg	7	7	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39694772	G	G	39694772	1	3	86	0	1	0	0	0	0	0	0	0	241	841	29	4		4	ADAM2	8	39694772	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1602871	39694772	106669250	424	89839											
OPRK1	4986	broad.mit.edu	37	chr8	54147395	54147395	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagccagatgcagatattGatgatctttgccttcaaggg	11	8	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54147395	A	A	54147395	2	1	86	1	0	0	0	0	0	0	0	1	10979	1280	45	4		4	OPRK1	8	54147395	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	14452623	54147395	92216627	425	89840											
OPRK1	4986	broad.mit.edu	37	chr8	54147497	54147497	+	Frame_Shift_Del	DEL	G	-	-													atggtcaaggtgaagatgctGgtgaacatgttgtagtaatc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54147497	-	-	54147497	7	5	86	1	0	1	0	1	0	0	0	0	10979	1335	47	0	718	0	OPRK1	8	54147497	Frame_Shift_Del	DEL	G	TCGA-17-Z057-01A-01W-0747-08	102	54147497	92216525	426	89841											
XKR4	114786	broad.mit.edu	37	chr8	56365271	56365271	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcggttgatgaagtggacCacagccccagctacattgca	11	11	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56365271	G	G	56365271	1	3	86	0	1	0	0	0	0	0	0	0	17560	609	21	4		4	XKR4	8	56365271	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2217774	56365271	89998751	427	89842											
CYP7A1	1581	broad.mit.edu	37	chr8	59404174	59404174	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaataagaaagcatcagaaTcaaaaattgcttgatttcgt	6	5	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59404174	A	A	59404174	3	1	86	1	0	0	0	0	1	0	0	0	4229	1435	50	5	143	5	CYP7A1	8	59404174	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3038903	59404174	86959848	428	89843											
RAB2A	5862	broad.mit.edu	37	chr8	61484555	61484555	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttttaatccttgaaagtGagatatattcccactaattt	5	6	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61484555	C	C	61484555	1	2	86	0	1	0	0	0	0	0	0	0	13025	1305	45	4		4	RAB2A	8	61484555	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2080381	61484555	84879467	429	89844											
PREX2	80243	broad.mit.edu	37	chr8	68934323	68934323	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtaaccatgagaaggcacAaaaattacttcttgaactca	6	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68934323	G	G	68934323	3	3	86	1	0	0	0	0	1	0	0	0	12583	130	5	5	403	5	PREX2	8	68934323	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	7449768	68934323	77429699	430	89845											
PREX2	80243	broad.mit.edu	37	chr8	69046289	69046289	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctctatgttctctttgatCacagatagtgagacacagct	7	9	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69046289	G	G	69046289	1	3	86	0	1	0	0	0	0	0	0	0	12583	841	29	4		4	PREX2	8	69046289	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	111966	69046289	77317733	431	89846											
TRAM1	23471	broad.mit.edu	37	chr8	71520475	71520475	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtgctccgccccggTtctgctcttcccagctgctc	10	18	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71520475	A	A	71520475	1	1	86	0	1	0	0	0	0	0	0	0	16575	1740	60	5		5	TRAM1	8	71520475	5'UTR	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2474186	71520475	74843547	432	89847											
TRPA1	8989	broad.mit.edu	37	chr8	72969945	72969945	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacttggcttgttccctcTtggtacctttagagagtagc	10	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72969945	A	A	72969945	1	1	86	0	1	0	0	0	0	0	0	0	16702	1624	56	5		5	TRPA1	8	72969945	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1449470	72969945	73394077	433	89848											
CRISPLD1	83690	broad.mit.edu	37	chr8	75932259	75932259	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttcaggctgtgacttgtGaaacaactgtggaacagctc	11	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75932259	C	C	75932259	3	2	86	1	0	0	0	0	1	0	0	0	3914	1291	45	4	1231	4	CRISPLD1	8	75932259	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2962314	75932259	70431763	434	89849											
ZFHX4	79776	broad.mit.edu	37	chr8	77766554	77766554	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggaagacctccctcggcctCtcaaacaccggtcccttcca	7	19	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77766554	G	G	77766554	3	3	86	1	0	0	0	0	1	0	0	0	17761	913	32	4	7431	4	ZFHX4	8	77766554	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1834295	77766554	68597468	435	89850											
ZFHX4	79776	broad.mit.edu	37	chr8	77767526	77767526	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaatgcccctcctgctgAggctgggtatgatcaaaata	9	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77767526	T	T	77767526	3	4	86	1	0	0	0	0	1	0	0	0	17761	304	11	5	8403	5	ZFHX4	8	77767526	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	972	77767526	68596496	436	89851											
RALYL	138046	broad.mit.edu	37	chr8	85800038	85800038	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaacatttggtattcacAccctttgggtaacaacacta	6	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85800038	C	C	85800038	1	2	86	0	1	0	0	0	0	0	0	0	13128	174	6	5		5	RALYL	8	85800038	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	8032512	85800038	60563984	437	89852											
SLC25A32	81034	broad.mit.edu	37	chr8	104414117	104414117	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatgacaaaaatttctaccTattaaatacccataaaagga	4	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104414117	C	C	104414117	1	2	86	0	1	0	0	0	0	0	0	0	14610	1537	53	5		5	SLC25A32	8	104414117	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	18614079	104414117	41949905	438	89853											
DCAF13	25879	broad.mit.edu	37	chr8	104445040	104445040	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgtataagtcgtactaatAaaatatataccactaggtag	6	5	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104445040	G	G	104445040	1	3	86	0	1	0	0	0	0	0	0	0	4299	377	13	5		5	DCAF13	8	104445040	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	30923	104445040	41918982	439	89854											
TRHR	7201	broad.mit.edu	37	chr8	110100053	110100053	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctctgcattacttacctCcagtatttgggaattaatgc	7	10	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110100053	A	A	110100053	2	1	86	1	0	0	0	0	0	0	0	1	16604	842	30	3		3	TRHR	8	110100053	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5655013	110100053	36263969	440	89855											
PKHD1L1	93035	broad.mit.edu	37	chr8	110432765	110432765	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgcccaagagaagacTtcctgcattagcaaataaag	8	8	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110432765	A	A	110432765	3	1	86	1	0	0	0	0	1	0	0	0	12067	1609	56	5	2633	5	PKHD1L1	8	110432765	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	332712	110432765	35931257	441	89856											
CSMD3	114788	broad.mit.edu	37	chr8	113702072	113702072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagggtaacatatgctatcTggaagcaaagcatttggtac	10	7	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113702072	A	A	113702072	1	1	86	0	1	0	0	0	0	0	0	0	3980	1595	55	5		5	CSMD3	8	113702072	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3269307	113702072	32661950	442	89857											
EIF3H	8667	broad.mit.edu	37	chr8	117658878	117658878	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaatggtttggttatttttCtccatctgaggaggaaaaaa	9	4	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117658878	G	G	117658878	1	3	86	0	1	0	0	0	0	0	0	0	5060	928	32	4		4	EIF3H	8	117658878	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3956806	117658878	28705144	443	89858											
ENPP2	5168	broad.mit.edu	37	chr8	120608147	120608147	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtatttttcttcttcttttCtttggaggagcaactggtct	8	7	5	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120608147	T	T	120608147	1	4	86	0	1	0	0	0	0	0	0	0	5172	912	32	4		4	ENPP2	8	120608147	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2949269	120608147	25755875	444	89859											
TAF2	6873	broad.mit.edu	37	chr8	120801062	120801062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttccaggagatgtatagtCctgttttatttccagttcca	8	8	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120801062	A	A	120801062	3	1	86	1	0	0	0	0	1	0	0	0	15643	855	30	3	2004	3	TAF2	8	120801062	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	192915	120801062	25562960	445	89860											
MTBP	27085	broad.mit.edu	37	chr8	121469061	121469061	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aataattaaatgttctatatCtgtgctaatacactagccta	4	7	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121469061	G	G	121469061	1	3	86	0	1	0	0	0	0	0	0	0	10006	928	32	4		4	MTBP	8	121469061	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	667999	121469061	24894961	446	89861											
KIAA0196	9897	broad.mit.edu	37	chr8	126096091	126096091	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattaccacaggaaacaatcCttaggattgcttggccacag	8	11	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126096091	G	G	126096091	3	3	86	1	0	0	0	0	1	0	0	0	8231	681	24	4	3541	4	KIAA0196	8	126096091	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4627030	126096091	20267931	447	89862											
OC90	729330	broad.mit.edu	37	chr8	133041296	133041296	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctcaatgaaataataactCaatgtgcaaccaacagcact	4	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133041296	G	G	133041296	1	3	86	0	1	0	0	0	0	0	0	0	10909	841	29	4		4	OC90	8	133041296	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6945205	133041296	13322726	448	89863											
COL22A1	169044	broad.mit.edu	37	chr8	139636060	139636060	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcaaattggttatcaggtCaaagaagattcgaggggatg	12	5	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139636060	G	G	139636060	1	3	86	0	1	0	0	0	0	0	0	0	3713	841	29	4		4	COL22A1	8	139636060	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6594764	139636060	6727962	449	89864											
COL22A1	169044	broad.mit.edu	37	chr8	139662035	139662035	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacatcctgagagtggggaGagaggtggggacaaagagag	18	5	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139662035	C	C	139662035	1	2	86	0	1	0	0	0	0	0	0	0	3713	957	33	4		4	COL22A1	8	139662035	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	25975	139662035	6701987	450	89865											
EIF2C2	27161	broad.mit.edu	37	chr8	141566197	141566197	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgcgtccgttccaagcatCagaggtttctgtgccagggc	13	12	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141566197	T	T	141566197	1	4	86	0	1	0	0	0	0	0	0	0	5046	841	29	4		4	EIF2C2	8	141566197	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1904162	141566197	4797825	451	89866											
PTK2	5747	broad.mit.edu	37	chr8	141828246	141828246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacttgtcccccactccaCtgaacaataaatgcagtgca	5	14	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141828246	A	A	141828246	1	1	86	0	1	0	0	0	0	0	0	0	12868	580	20	3		3	PTK2	8	141828246	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	262049	141828246	4535776	452	89867											
VLDLR	7436	broad.mit.edu	37	chr9	2643055	2643055	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctttaagttgggctagtAagttaggattaatgaataaa	10	3	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2643055	C	C	2643055	1	2	86	0	1	0	0	0	0	0	0	0	17301	377	13	5		5	VLDLR	9	2643055	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08		2643055	138570376	453	89868											
KIAA0020	9933	broad.mit.edu	37	chr9	2804411	2804412	+	In_Frame_Ins	INS	-	TAGTGC	TAGTGC													aatgtaggaatcaagcttttINScagtgcagctttgactttgt							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TAGTGC	2804412	TAGTGC	TAGTGC	2804411	7	5	86	1	0	1	1	0	0	0	0	0	8222	1792	62	0	83	0	KIAA0020	9	2804411	In_Frame_Ins	INS	-	TCGA-17-Z057-01A-01W-0747-08	161356	2804411	138409020	454	89869											
GLIS3	169792	broad.mit.edu	37	chr9	3829339	3829339	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgagtgagtcgagaaggctCtgtggaaaacatcaaaactg	12	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3829339	T	T	3829339	3	4	86	1	0	0	0	0	1	0	0	0	6511	913	32	4	173	4	GLIS3	9	3829339	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1024928	3829339	137384092	455	89870											
INSL4	3641	broad.mit.edu	37	chr9	5233852	5233852	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaagtaatttgtgacgatgGaacttcagttaaattatgta	9	3	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5233852	A	A	5233852	3	1	86	1	0	0	0	0	1	0	0	0	7838	1174	41	4	401	4	INSL4	9	5233852	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1404513	5233852	135979579	456	89871											
KIAA1432	57589	broad.mit.edu	37	chr9	5772996	5772996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcagattttggttattaCacagtcttcagaggtagatg	9	6	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5772996	A	A	5772996	3	1	86	1	0	0	0	0	1	0	0	0	8303	478	17	3	3830	3	KIAA1432	9	5772996	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	539144	5772996	135440435	457	89872											
GLDC	2731	broad.mit.edu	37	chr9	6644757	6644757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtcacctctgtgttttgCgactacaaagccttgtggga	11	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6644757	T	T	6644757	1	4	86	0	1	0	0	0	0	0	0	0	6497	783	27	4		4	GLDC	9	6644757	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	871761	6644757	134568674	458	89873											
PTPRD	5789	broad.mit.edu	37	chr9	8341934	8341934	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgctttattctttctaacAtggcatctatgacgatgaag	7	8	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8341934	T	T	8341934	3	4	86	1	0	0	0	0	1	0	0	0	12907	217	8	5	1060	5	PTPRD	9	8341934	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1697177	8341934	132871497	459	89874											
PTPRD	5789	broad.mit.edu	37	chr9	8748016	8748016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccatgactaagatctacCgcggacccctggaccggcct	10	15	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8748016	A	A	8748016	1	1	86	0	1	0	0	0	0	0	0	0	12907	667	23	1		1	PTPRD	9	8748016	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	406082	8748016	132465415	460	89875											
CDKN2A	1029	broad.mit.edu	37	chr9	21971145	21971145	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagtggcggggtcggcgcaGttgggctccgcgccgtggag	21	10	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21971145	C	C	21971145	3	2	86	1	0	0	0	0	1	0	0	0	3191	1020	36	4	265	4	CDKN2A	9	21971145	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	13223129	21971145	119242286	461	89876											
ELAVL2	1993	broad.mit.edu	37	chr9	23764862	23764862	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aattgcaatgtgctttaagtCctaatgatggccataccaca	7	9	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23764862	G	G	23764862	1	3	86	0	1	0	0	0	0	0	0	0	5092	870	30	4		4	ELAVL2	9	23764862	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1793717	23764862	117448569	462	89877											
VPS13A	23230	broad.mit.edu	37	chr9	79930063	79930064	+	Intron	INS	-	T	T													gagacatgacttcagaatgcINSttttttttgtcagtaaaaga							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79930064	T	T	79930063	6	5	86	0	1	1	1	0	0	0	0	0	17316	812	28	0		0	VPS13A	9	79930063	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	56165201	79930063	61283368	463	89878											
SLC28A3	64078	broad.mit.edu	37	chr9	86894927	86894927	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaagcaggccacggtcccCgcaatcagagctctcactgc	10	15	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86894927	G	G	86894927	2	3	86	1	0	0	0	0	0	0	0	1	14647	639	23	4		4	SLC28A3	9	86894927	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6964864	86894927	54318504	464	89879											
IARS	3376	broad.mit.edu	37	chr9	95014219	95014219	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgttaaataagtgtttatCattaaaaaaataagtttatt	4	2	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95014219	G	G	95014219	1	3	86	0	1	0	0	0	0	0	0	0	7543	841	29	4		4	IARS	9	95014219	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8119292	95014219	46199212	465	89880											
COL15A1	1306	broad.mit.edu	37	chr9	101749626	101749626	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccccaggactcccgaggaGctgtgtgaccctgaagagtc	13	13	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101749626	C	C	101749626	3	2	86	1	0	0	0	0	1	0	0	0	3704	962	34	4	713	4	COL15A1	9	101749626	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6735407	101749626	39463805	466	89881											
C9orf125	84302	broad.mit.edu	37	chr9	104238916	104238916	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagagcaacttggcatcAaaatggctcacactacgctc	9	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104238916	G	G	104238916	2	3	86	1	0	0	0	0	0	0	0	1	2480	127	5	5		5	C9orf125	9	104238916	Silent	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2489290	104238916	36974515	467	89882											
SLC46A2	57864	broad.mit.edu	37	chr9	115652023	115652023	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgcacttggttccaaccGagaggctccctcagcacaaa	8	15	1	1	rs139403102		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115652023	A	A	115652023	2	1	86	1	0	0	0	0	0	0	0	1	14759	1045	37	4		4	SLC46A2	9	115652023	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	11413107	115652023	25561408	468	89883											
COL27A1	85301	broad.mit.edu	37	chr9	116918422	116918422	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccccttcctgcgcccccgcGaggcgggacgccaagggtta	14	17	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116918422	A	A	116918422	1	1	86	0	1	0	0	0	0	0	0	0	3717	1073	37	4		4	COL27A1	9	116918422	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1266399	116918422	24295009	469	89884											
TNC	3371	broad.mit.edu	37	chr9	117791725	117791725	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcgcgtccgtttttgcgtCtcaggaacacctataaacat	7	12	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117791725	T	T	117791725	3	4	86	1	0	0	0	0	1	0	0	0	16393	913	32	4	538	4	TNC	9	117791725	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	873303	117791725	23421706	470	89885											
TNC	3371	broad.mit.edu	37	chr9	117840266	117840266	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggttgcttgacatgtcacctCtgcgggagatgagggacacc	14	10	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117840266	A	A	117840266	3	1	86	1	0	0	0	0	1	0	0	0	16393	913	32	3	4063	3	TNC	9	117840266	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	48541	117840266	23373165	471	89886											
DPM2	8818	broad.mit.edu	37	chr9	130699749	130699749	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcggtgtagtaggtgaagatGatcaggctaacggcgacgag	17	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130699749	A	A	130699749	2	1	86	1	0	0	0	0	0	0	0	1	4765	1280	45	4		4	DPM2	9	130699749	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	12859483	130699749	10513682	472	89887											
DDX31	64794	broad.mit.edu	37	chr9	135521367	135521367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgccggcgcccctgagCtgctcagcagggtctgtagg	15	13	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135521367	A	A	135521367	3	1	86	1	0	0	0	0	1	0	0	0	4389	797	28	3	984	3	DDX31	9	135521367	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4821618	135521367	5692064	473	89888											
ARMC3	219681	broad.mit.edu	37	chr10	23244703	23244703	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgatgagatcgataatatCcatgtgtggttttgttttac	10	5	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23244703	G	G	23244703	1	3	86	0	1	0	0	0	0	0	0	0	956	870	30	4		4	ARMC3	10	23244703	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08		23244703	112290044	474	89889											
ANKRD26	22852	broad.mit.edu	37	chr10	27322273	27322273	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agattgtttttttagggtatCagctagttcttgttgaagtt	10	3	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27322273	T	T	27322273	3	4	86	1	0	0	0	0	1	0	0	0	654	826	29	4	1484	4	ANKRD26	10	27322273	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4077570	27322273	108212474	475	89890											
MKX	283078	broad.mit.edu	37	chr10	28024265	28024265	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggctgtcgaacggtattCttaagccgacgtcttgcatt	10	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28024265	A	A	28024265	3	1	86	1	0	0	0	0	1	0	0	0	9703	912	32	3	687	3	MKX	10	28024265	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	701992	28024265	107510482	476	89891											
SVIL	6840	broad.mit.edu	37	chr10	29820203	29820203	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcgacagttggcgtttctGaatgtgaagtgcacctagga	12	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29820203	A	A	29820203	3	1	86	1	0	0	0	0	1	0	0	0	15539	1294	45	4	4736	4	SVIL	10	29820203	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1795938	29820203	105714544	477	89892											
MTPAP	55149	broad.mit.edu	37	chr10	30630650	30630650	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgataaggtgtttaaagactTcatatatgactaaaaccaac	6	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30630650	A	A	30630650	1	1	86	0	1	0	0	0	0	0	0	0	10050	1798	62	5		5	MTPAP	10	30630650	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	810447	30630650	104904097	478	89893											
MAP3K8	1326	broad.mit.edu	37	chr10	30748380	30748380	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactctgccctcttggagcGcaagaggctgctgagtagga	15	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30748380	A	A	30748380	3	1	86	1	0	0	0	0	1	0	0	0	9348	1087	38	4	1245	4	MAP3K8	10	30748380	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	117730	30748380	104786367	479	89894											
PARD3	56288	broad.mit.edu	37	chr10	34606279	34606279	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttccacttggaaggaaaGaaaaaaaaatagggacacag	9	6	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34606279	C	C	34606279	1	2	86	0	1	0	0	0	0	0	0	0	11537	957	33	4		4	PARD3	10	34606279	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3857899	34606279	100928468	480	89895											
ANKRD30A	91074	broad.mit.edu	37	chr10	37438566	37438566	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgattgatgataaatctcTtttgctttttagagcctcct	6	7	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37438566	C	C	37438566	1	2	86	0	1	0	0	0	0	0	0	0	658	1624	56	5		5	ANKRD30A	10	37438566	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2832287	37438566	98096181	481	89896											
ZNF33A	7581	broad.mit.edu	37	chr10	38306476	38306476	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcctaaatcaaacttccaGatactactcacaaaaaattc	1	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38306476	A	A	38306476	1	1	86	0	1	0	0	0	0	0	0	0	17980	957	33	4		4	ZNF33A	10	38306476	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	867910	38306476	97228271	482	89897											
ZNF239	8187	broad.mit.edu	37	chr10	44052872	44052872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagtagtagctctgagCtttgactgaagttcttacca	10	7	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44052872	A	A	44052872	3	1	86	1	0	0	0	0	1	0	0	0	17917	797	28	3	724	3	ZNF239	10	44052872	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5746396	44052872	91481875	483	89898											
ASAH2	56624	broad.mit.edu	37	chr10	51974721	51974721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattaaatccactctggcaaActattcaaaatcatttgcag	4	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51974721	T	T	51974721	1	4	86	0	1	0	0	0	0	0	0	0	1011	58	2	5		5	ASAH2	10	51974721	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	7921849	51974721	83560026	484	89899											
A1CF	29974	broad.mit.edu	37	chr10	52566490	52566490	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaatttaaaaaagcatcttCagaaggtgccatatccatcc	5	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52566490	T	T	52566490	2	4	86	1	0	0	0	0	0	0	0	1	2	837	29	4		4	A1CF	10	52566490	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	591769	52566490	82968257	485	89900											
A1CF	29974	broad.mit.edu	37	chr10	52566514	52566514	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtgccatatccatcccctCgggcagtcactgcaaaagtt	9	13	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52566514	T	T	52566514	3	4	86	1	0	0	0	0	1	0	0	0	2	884	31	4	28	4	A1CF	10	52566514	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	24	52566514	82968233	486	89901											
MBL2	4153	broad.mit.edu	37	chr10	54527763	54527763	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctttgttggtgctgttagtGatcatttttagtgattgccc	11	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54527763	A	A	54527763	1	1	86	0	1	0	0	0	0	0	0	0	9443	1305	45	4		4	MBL2	10	54527763	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1961249	54527763	81006984	487	89902											
PCDH15	65217	broad.mit.edu	37	chr10	55996471	55996471	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttatacacaaaagtaacaAtcatgtcaaataataaactt	3	6	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55996471	T	T	55996471	1	4	86	0	1	0	0	0	0	0	0	0	11605	116	4	5		5	PCDH15	10	55996471	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1468708	55996471	79538276	488	89903											
PCDH15	65217	broad.mit.edu	37	chr10	56106178	56106178	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatctgtccatttggtccatCatctatatctgtagctccat	5	11	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56106178	T	T	56106178	3	4	86	1	0	0	0	0	1	0	0	0	11605	826	29	4	7082	4	PCDH15	10	56106178	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	109707	56106178	79428569	489	89904											
C10orf107	219621	broad.mit.edu	37	chr10	63445975	63445975	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcagtaacatttatttttCatttcacatcttctggaaaa	3	7	5	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63445975	G	G	63445975	1	3	86	0	1	0	0	0	0	0	0	0	1592	841	29	4		4	C10orf107	10	63445975	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	7339797	63445975	72088772	490	89905											
COL13A1	1305	broad.mit.edu	37	chr10	71655370	71655370	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttagcagggcactttgatCcatccctggggcacagcgcc	11	13	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71655370	A	A	71655370	1	1	86	0	1	0	0	0	0	0	0	0	3702	870	30	3		3	COL13A1	10	71655370	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8209395	71655370	63879377	491	89906											
SGPL1	8879	broad.mit.edu	37	chr10	72619271	72619271	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtgtaagtatatgcaaGgggcatccaatagccttatt	11	6	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72619271	A	A	72619271	1	1	86	0	1	0	0	0	0	0	0	0	14331	1015	35	4		4	SGPL1	10	72619271	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	963901	72619271	62915476	492	89907											
NDST2	8509	broad.mit.edu	37	chr10	75566094	75566094	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcggtagcgggcagggcggaGatggggatactcctcagtgc	19	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75566094	A	A	75566094	3	1	86	1	0	0	0	0	1	0	0	0	10351	942	33	4	1304	4	NDST2	10	75566094	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2946823	75566094	59968653	493	89908											
KCNMA1	3778	broad.mit.edu	37	chr10	78649473	78649473	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccaagggacggcagtggaaGaagtcaacatgtttaacaga	13	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78649473	A	A	78649473	1	1	86	0	1	0	0	0	0	0	0	0	8143	957	33	4		4	KCNMA1	10	78649473	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3083379	78649473	56885274	494	89909											
CDHR1	92211	broad.mit.edu	37	chr10	85965669	85965669	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctccagagagaggtgtatGagctgcatgtacaggtaccc	13	9	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85965669	A	A	85965669	3	1	86	1	0	0	0	0	1	0	0	0	3148	1291	45	4	987	4	CDHR1	10	85965669	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7316196	85965669	49569078	495	89910											
RGR	5995	broad.mit.edu	37	chr10	86008569	86008569	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaatattaaggccctcttCagagaagaagggcagcattc	9	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86008569	T	T	86008569	1	4	86	0	1	0	0	0	0	0	0	0	13400	841	29	4		4	RGR	10	86008569	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	42900	86008569	49526178	496	89911											
GRID1	2894	broad.mit.edu	37	chr10	87482852	87482852	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgtgaagagccaccagctGcccatcacgatgcgcatggc	12	14	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87482852	A	A	87482852	2	1	86	1	0	0	0	0	0	0	0	1	6837	1306	46	4		4	GRID1	10	87482852	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1474283	87482852	48051895	497	89912											
LIPJ	142910	broad.mit.edu	37	chr10	90354547	90354547	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actattggtatgccaagaaaGattattgctaatatccctta	6	7	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90354547	C	C	90354547	1	2	86	0	1	0	0	0	0	0	0	0	8899	957	33	4		4	LIPJ	10	90354547	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2871695	90354547	45180200	498	89913											
KIF20B	9585	broad.mit.edu	37	chr10	91498223	91498223	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaatttcaagaacatcttCaggattctgtcaaaaacacc	6	9	5	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91498223	T	T	91498223	4	4	86	1	0	0	0	0	0	1	0	0	8357	827	29	4	3579	4	KIF20B	10	91498223	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1143676	91498223	44036524	499	89914											
MYOF	26509	broad.mit.edu	37	chr10	95072853	95072853	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttctgctcaaagagggagGctgtcttggctttaaggggg	15	7	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95072853	C	C	95072853	3	2	86	1	0	0	0	0	1	0	0	0	10183	1203	42	4	388	4	MYOF	10	95072853	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3574630	95072853	40461894	500	89915											
LGI1	9211	broad.mit.edu	37	chr10	95552889	95552889	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgaatatttaagatctAgccaaggaaagaggtattag	10	4	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95552889	G	G	95552889	1	3	86	0	1	0	0	0	0	0	0	0	8823	435	15	5		5	LGI1	10	95552889	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	480036	95552889	39981858	501	89916											
DNTT	1791	broad.mit.edu	37	chr10	98077982	98077982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggaggcctaaattctccAcacctatggttaggtctagc	9	11	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98077982	G	G	98077982	1	3	86	0	1	0	0	0	0	0	0	0	4720	174	6	5		5	DNTT	10	98077982	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2525093	98077982	37456765	502	89917											
TM9SF3	56889	broad.mit.edu	37	chr10	98307731	98307731	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagacaaatatggctgtactGagcattgatcccctcctaaa	7	10	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98307731	A	A	98307731	2	1	86	1	0	0	0	0	0	0	0	1	16102	1277	45	4		4	TM9SF3	10	98307731	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	229749	98307731	37227016	503	89918											
TM9SF3	56889	broad.mit.edu	37	chr10	98310989	98310989	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagacataatacagttaagTgtaggcacttactcagtata	7	6	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98310989	A	A	98310989	1	1	86	0	1	0	0	0	0	0	0	0	16102	1711	59	5		5	TM9SF3	10	98310989	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3258	98310989	37223758	504	89919											
SLIT1	6585	broad.mit.edu	37	chr10	98807614	98807614	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccatgagagggtgggggcaGaggctgaggagcccggggcc	22	9	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98807614	A	A	98807614	1	1	86	0	1	0	0	0	0	0	0	0	14853	957	33	4		4	SLIT1	10	98807614	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	496625	98807614	36727133	505	89920											
SEC31B	25956	broad.mit.edu	37	chr10	102250124	102250124	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgtcactaaacttcatttCaggagcaactcagagcatat	6	9	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102250124	T	T	102250124	1	4	86	0	1	0	0	0	0	0	0	0	14112	841	29	4		4	SEC31B	10	102250124	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3442510	102250124	33284623	506	89921											
C10orf2	56652	broad.mit.edu	37	chr10	102749166	102749166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctttccagacctcaatcGtatcttgaagggacatcgaa	8	12	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102749166	T	T	102749166	3	4	86	1	0	0	0	0	1	0	0	0	1608	1145	40	3	1201	3	C10orf2	10	102749166	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	499042	102749166	32785581	507	89922											
AS3MT	57412	broad.mit.edu	37	chr10	104650502	104650502	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttgagatggagtctctctCtgtcacccagactggagtgc	11	10	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104650502	G	G	104650502	1	3	86	0	1	0	0	0	0	0	0	0	1009	928	32	4		4	AS3MT	10	104650502	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1901336	104650502	30884245	508	89923											
ABLIM1	3983	broad.mit.edu	37	chr10	116449827	116449827	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagattctaggatactgcaaGcaaatggggtggagggtgct	15	5	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116449827	A	A	116449827	1	1	86	0	1	0	0	0	0	0	0	0	94	986	34	4		4	ABLIM1	10	116449827	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	11799325	116449827	19084920	509	89924											
GFRA1	2674	broad.mit.edu	37	chr10	117885020	117885020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaatgtcgtcgaggttgCaggccttcgctgcatccagg	13	11	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117885020	T	T	117885020	3	4	86	1	0	0	0	0	1	0	0	0	6411	710	25	4	939	4	GFRA1	10	117885020	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1435193	117885020	17649727	510	89925											
C10orf82	143379	broad.mit.edu	37	chr10	118424327	118424327	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccgtgatctccaggaagtCcttgtagcagtttttggcca	10	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118424327	T	T	118424327	3	4	86	1	0	0	0	0	1	0	0	0	1631	855	30	4	66	4	C10orf82	10	118424327	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	539307	118424327	17110420	511	89926											
EIF3A	8661	broad.mit.edu	37	chr10	120809908	120809908	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaactgggttctgagatccAgttaattacagtgctaaaag	9	7	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120809908	C	C	120809908	1	2	86	0	1	0	0	0	0	0	0	0	5052	203	7	5		5	EIF3A	10	120809908	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2385581	120809908	14724839	512	89927											
HTRA1	5654	broad.mit.edu	37	chr10	124273506	124273506	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaggtgatccacctgcctCagcctcccaaagtgctggga	10	15	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124273506	A	A	124273506	1	1	86	0	1	0	0	0	0	0	0	0	7523	841	29	3		3	HTRA1	10	124273506	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3463598	124273506	11261241	513	89928											
C10orf120	399814	broad.mit.edu	37	chr10	124457744	124457744	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccagagcccgagcaagcctCatcctctctatgtgcttact	7	16	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124457744	G	G	124457744	3	3	86	1	0	0	0	0	1	0	0	0	1601	826	29	4	498	4	C10orf120	10	124457744	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	184238	124457744	11077003	514	89929											
DOCK1	1793	broad.mit.edu	37	chr10	129209050	129209050	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagaccccgtgtccaaaagCaaattggctatttgccgggt	10	12	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129209050	G	G	129209050	1	3	86	0	1	0	0	0	0	0	0	0	4724	725	25	4		4	DOCK1	10	129209050	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4751306	129209050	6325697	515	89930											
OR52N4	390072	broad.mit.edu	37	chr11	5775947	5775947	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccagacaaattttgagctAtttcataacctaccagactt	5	11	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5775947	T	T	5775947	1	4	86	0	1	0	0	0	0	0	0	0	11223	464	16	5		5	OR52N4	11	5775947	5'UTR	SNP	A	TCGA-17-Z057-01A-01W-0747-08		5775947	129230569	516	89931											
USP47	55031	broad.mit.edu	37	chr11	11950896	11950896	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacttaccatgttacttctCtgtgtgttaacagagaatag	7	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11950896	G	G	11950896	1	3	86	0	1	0	0	0	0	0	0	0	17205	928	32	4		4	USP47	11	11950896	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6174949	11950896	123055620	517	89932											
CALCB	797	broad.mit.edu	37	chr11	15096643	15096643	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcccagacccggccacactCagtaaagaggacgcgcgcct	11	16	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15096643	A	A	15096643	2	1	86	1	0	0	0	0	0	0	0	1	2602	813	29	3		3	CALCB	11	15096643	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3145747	15096643	119909873	518	89933											
MRGPRX2	117194	broad.mit.edu	37	chr11	19077037	19077037	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccacctcagcaatgtcctGcagagccctctggagagcca	9	15	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19077037	T	T	19077037	3	4	86	1	0	0	0	0	1	0	0	0	9861	1328	46	3	83	3	MRGPRX2	11	19077037	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3980394	19077037	115929479	519	89934											
NAV2	89797	broad.mit.edu	37	chr11	19905880	19905880	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaagcaaaatcatccgcTtcactctgggtcagaaaaag	7	11	5	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19905880	G	G	19905880	3	3	86	1	0	0	0	0	1	0	0	0	10278	1624	56	5		5	NAV2	11	19905880	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	828843	19905880	115100636	520	89935											
SLC6A5	9152	broad.mit.edu	37	chr11	20668618	20668618	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggttgggtggtggtcttgtCtttcaaatgagaaaactgaa	13	4	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20668618	G	G	20668618	1	3	86	0	1	0	0	0	0	0	0	0	14801	928	32	4		4	SLC6A5	11	20668618	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	762738	20668618	114337898	521	89936											
ANO3	63982	broad.mit.edu	37	chr11	26619999	26619999	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgggaagaagaggaggtaaGatgttaggatacaaggaaat	15	1	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26619999	C	C	26619999	1	2	86	0	1	0	0	0	0	0	0	0	698	957	33	4		4	ANO3	11	26619999	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5951381	26619999	108386517	522	89937											
KIF18A	81930	broad.mit.edu	37	chr11	28090868	28090868	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcgacacgatggagccaatTagtattctcatcaaattgct	7	9	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28090868	A	A	28090868	3	1	86	1	0	0	0	0	1	0	0	0	8350	1754	61	5	1196	5	KIF18A	11	28090868	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1470869	28090868	106915648	523	89938											
PAX6	5080	broad.mit.edu	37	chr11	31823248	31823248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctactctcggtttactaCcaccgattgccctgggtctg	9	14	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31823248	A	A	31823248	3	1	86	1	0	0	0	0	1	0	0	0	11577	507	18	3	1082	3	PAX6	11	31823248	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3732380	31823248	103183268	524	89939											
CCDC73	493860	broad.mit.edu	37	chr11	32635665	32635665	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaggtttcaccaacatagaCatactatggacatttttatc	5	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32635665	T	T	32635665	3	4	86	1	0	0	0	0	1	0	0	0	2874	478	17	4	1052	4	CCDC73	11	32635665	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	812417	32635665	102370851	525	89940											
CCDC73	493860	broad.mit.edu	37	chr11	32705159	32705159	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatctcattaaaatacttTaattatctacacaaattcct	0	8	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32705159	C	C	32705159	1	2	86	0	1	0	0	0	0	0	0	0	2874	1769	61	5		5	CCDC73	11	32705159	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	69494	32705159	102301357	526	89941											
CD59	966	broad.mit.edu	37	chr11	33743839	33743839	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaccaaagccaggcctggagGagcagctggggctgaaactg	15	10	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33743839	C	C	33743839	1	2	86	0	1	0	0	0	0	0	0	0	3056	1189	41	4		4	CD59	11	33743839	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1038680	33743839	101262677	527	89942											
ALKBH3	221120	broad.mit.edu	37	chr11	43919175	43919175	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgttcatgtcattgaaaGgcgctgcaagctggatgtag	14	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43919175	C	C	43919175	1	2	86	0	1	0	0	0	0	0	0	0	528	1015	35	4		4	ALKBH3	11	43919175	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	10175336	43919175	91087341	528	89943											
EXT2	2132	broad.mit.edu	37	chr11	44151737	44151737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtggtaccgaaatggtGgccttgactggatacagagg	16	6	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44151737	T	T	44151737	1	4	86	0	1	0	0	0	0	0	0	0	5367	1363	47	2		2	EXT2	11	44151737	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	232562	44151737	90854779	529	89944											
CHST1	8534	broad.mit.edu	37	chr11	45671206	45671206	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatcaaaaccgacacctTgcgcctcccgcccccacccg	5	20	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45671206	C	C	45671206	1	2	86	0	1	0	0	0	0	0	0	0	3428	1827	63	5		5	CHST1	11	45671206	3'UTR	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1519469	45671206	89335310	530	89945											
HARBI1	283254	broad.mit.edu	37	chr11	46624893	46624893	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggtttcagtttaattaaTgcatatgcaaatgaatcaag	7	5	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46624893	A	A	46624893	1	1	86	0	1	0	0	0	0	0	0	0	7024	1479	51	5		5	HARBI1	11	46624893	3'UTR	SNP	T	TCGA-17-Z057-01A-01W-0747-08	953687	46624893	88381623	531	89946											
ARFGAP2	84364	broad.mit.edu	37	chr11	47196580	47196583	+	Frame_Shift_Del	DEL	TGAA	-	-													actcacttgagtgtgttctgTgaagaaatcagagtccttct							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47196583	-	-	47196580	7	5	86	1	0	1	0	1	0	0	0	0	852	1696	59	0	1147	0	ARFGAP2	11	47196580	Frame_Shift_Del	DEL	TGAA	TCGA-17-Z057-01A-01W-0747-08	571687	47196580	87809936	532	89947											
FNBP4	23360	broad.mit.edu	37	chr11	47767698	47767698	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacaacactgcaaagatcCtcctgagaagggtcttctat	9	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47767698	T	T	47767698	2	4	86	1	0	0	0	0	0	0	0	1	6025	680	24	4		4	FNBP4	11	47767698	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	571118	47767698	87238818	533	89948											
OR4S2	219431	broad.mit.edu	37	chr11	55419180	55419180	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgaccttttcagaggataaGatggtggctgtattttacac	10	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55419180	C	C	55419180	3	2	86	1	0	0	0	0	1	0	0	0	11177	933	33	4	803	4	OR4S2	11	55419180	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7651482	55419180	79587336	534	89949											
OR5D14	219436	broad.mit.edu	37	chr11	55563770	55563770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccacctgggcctcccacCtgacttctatcaccatcttc	4	19	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563770	A	A	55563770	3	1	86	1	0	0	0	0	1	0	0	0	11249	680	24	2	741	2	OR5D14	11	55563770	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	144590	55563770	79442746	535	89950											
SPRYD5	84767	broad.mit.edu	37	chr11	55655764	55655764	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactgaccatggggtatcatGatgttgaacattcacataca	9	8	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55655764	C	C	55655764	1	2	86	0	1	0	0	0	0	0	0	0	15229	1305	45	4		4	SPRYD5	11	55655764	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	91994	55655764	79350752	536	89951											
OR5I1	10798	broad.mit.edu	37	chr11	55703185	55703185	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcccactgaaagagCggatctttaagactgagaga	9	10	2	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55703185	G	G	55703185	3	3	86	1	0	0	0	0	1	0	0	0	11258	768	27	4	255	4	OR5I1	11	55703185	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	47421	55703185	79303331	537	89952											
OR5I1	10798	broad.mit.edu	37	chr11	55703938	55703938	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatgctataatgatgaaaAaagaaaaataattagatgta	6	2	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55703938	G	G	55703938	1	3	86	0	1	0	0	0	0	0	0	0	11258	29	1	5		5	OR5I1	11	55703938	5'Flank	SNP	A	TCGA-17-Z057-01A-01W-0747-08	753	55703938	79302578	538	89953											
OR5F1	338674	broad.mit.edu	37	chr11	55761919	55761919	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggacaggttagccaggaaGaaatacatgggtgtgtgaag	15	4	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55761919	C	C	55761919	3	2	86	1	0	0	0	0	1	0	0	0	11252	933	33	4	764	4	OR5F1	11	55761919	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	57981	55761919	79244597	539	89954											
OR8J1	219477	broad.mit.edu	37	chr11	56128652	56128652	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattcatgacaaatctgtgCtattcctttaaaacaatgta	5	7	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128652	A	A	56128652	4	1	86	1	0	0	0	0	0	1	0	0	11335	805	28	3	932	3	OR8J1	11	56128652	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	366733	56128652	78877864	540	89955											
OR5AK2	390181	broad.mit.edu	37	chr11	56756334	56756334	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattgcaagaaatctcaaaGatttcccttcttttctgggt	6	9	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56756334	C	C	56756334	1	2	86	0	1	0	0	0	0	0	0	0	11236	957	33	4		4	OR5AK2	11	56756334	5'Flank	SNP	G	TCGA-17-Z057-01A-01W-0747-08	627682	56756334	78250182	541	89956											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57068279	57068279	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgagcctcagtttgcctCttctgtgaagtgagagtttc	10	9	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57068279	T	T	57068279	1	4	86	0	1	0	0	0	0	0	0	0	16443	928	32	4		4	TNKS1BP1	11	57068279	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	311945	57068279	77938237	542	89957											
OR4D10	390197	broad.mit.edu	37	chr11	59244952	59244952	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatttattttccttggccTgacccagaatcgggaagtga	10	8	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59244952	C	C	59244952	3	2	86	1	0	0	0	0	1	0	0	0	11148	1580	55	5	52	5	OR4D10	11	59244952	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2176673	59244952	75761564	543	89958											
GIF	2694	broad.mit.edu	37	chr11	59604642	59604642	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acataaggagaggtggatgtCttaccaggactacaagtgac	12	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59604642	G	G	59604642	1	3	86	0	1	0	0	0	0	0	0	0	6440	928	32	4		4	GIF	11	59604642	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	359690	59604642	75401874	544	89959											
ZP1	22917	broad.mit.edu	37	chr11	60641198	60641198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaccagcgattcactgttGctaccttcgccctcctggac	7	16	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60641198	T	T	60641198	3	4	86	1	0	0	0	0	1	0	0	0	18344	1319	46	3	1556	3	ZP1	11	60641198	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1036556	60641198	74365318	545	89960											
FADS2	9415	broad.mit.edu	37	chr11	61624444	61624444	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatgggaggctgggagctGaggctactgggtgctcatga	17	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61624444	A	A	61624444	1	1	86	0	1	0	0	0	0	0	0	0	5412	1305	45	4		4	FADS2	11	61624444	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	983246	61624444	73382072	546	89961											
ASRGL1	80150	broad.mit.edu	37	chr11	62105605	62105605	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgccgtagagggagctgtCgtcgccctggaagacgatcc	15	11	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62105605	A	A	62105605	2	1	86	1	0	0	0	0	0	0	0	1	1064	871	31	3		3	ASRGL1	11	62105605	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	481161	62105605	72900911	547	89962											
AHNAK	79026	broad.mit.edu	37	chr11	62289498	62289498	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaggtcaacttcaggcaTagagatcttcggtgccttga	10	9	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62289498	C	C	62289498	3	2	86	1	0	0	0	0	1	0	0	0	414	1406	49	5	5401	5	AHNAK	11	62289498	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	183893	62289498	72717018	548	89963											
C11orf48	79081	broad.mit.edu	37	chr11	62437203	62437203	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctcatggggcaaatggaGatccccactctcttcattca	7	14	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62437203	A	A	62437203	3	1	86	1	0	0	0	0	1	0	0	0	1656	942	33	4	588	4	C11orf48	11	62437203	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	147705	62437203	72569313	549	89964											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62489215	62489215	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acccttgttctcagacacttGagactaattctccattaaag	5	11	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62489215	C	C	62489215	1	2	86	0	1	0	0	0	0	0	0	0	7342	1305	45	4		4	HNRNPUL2	11	62489215	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	52012	62489215	72517301	550	89965											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62489887	62489887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaagagcacttattggctGacgaggctttgggttgatta	13	6	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62489887	C	C	62489887	1	2	86	0	1	0	0	0	0	0	0	0	7342	1305	45	4		4	HNRNPUL2	11	62489887	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	672	62489887	72516629	551	89966											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62490394	62490394	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctggccaagtcagaaaggGaactattagatattgtgacc	10	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62490394	A	A	62490394	1	1	86	0	1	0	0	0	0	0	0	0	7342	1189	41	4		4	HNRNPUL2	11	62490394	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	507	62490394	72516122	552	89967											
SLC22A10	387775	broad.mit.edu	37	chr11	63058004	63058004	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtggatggctgggtatatGatcaaagctacttcccttcg	12	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63058004	A	A	63058004	3	1	86	1	0	0	0	0	1	0	0	0	14554	1290	45	4	369	4	SLC22A10	11	63058004	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	567610	63058004	71948512	553	89968											
MARK2	2011	broad.mit.edu	37	chr11	63670486	63670486	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggggagaacctggctgtaGaccactttggctttctgata	14	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63670486	C	C	63670486	1	2	86	0	1	0	0	0	0	0	0	0	9405	957	33	4		4	MARK2	11	63670486	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	612482	63670486	71336030	554	89969											
MACROD1	28992	broad.mit.edu	37	chr11	63767231	63767231	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgggccccactgtgtggatGacgtctacggggggcgacgg	18	10	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63767231	T	T	63767231	2	4	86	1	0	0	0	0	0	0	0	1	9233	1277	45	3		3	MACROD1	11	63767231	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	96745	63767231	71239285	555	89970											
MACROD1	28992	broad.mit.edu	37	chr11	63919947	63919947	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacatctcctttcttgcctCatccaagaatgcaaaccagc	4	16	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63919947	T	T	63919947	1	4	86	0	1	0	0	0	0	0	0	0	9233	841	29	4		4	MACROD1	11	63919947	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	152716	63919947	71086569	556	89971											
SNX15	29907	broad.mit.edu	37	chr11	64799559	64799559	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccccgtgagggggactagGaggcacctggggcattacag	17	10	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64799559	A	A	64799559	1	1	86	0	1	0	0	0	0	0	0	0	15000	1189	41	4		4	SNX15	11	64799559	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	879612	64799559	70206957	557	89972											
C11orf80	79703	broad.mit.edu	37	chr11	66529037	66529037	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaactatggctttcagtgtCtgtctgctctactggctctt	8	10	5	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66529037	T	T	66529037	1	4	86	0	1	0	0	0	0	0	0	0	1676	928	32	4		4	C11orf80	11	66529037	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1729478	66529037	68477479	558	89973											
C11orf80	79703	broad.mit.edu	37	chr11	66529307	66529307	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtcactcagcctcctcttCttgtccagcttcatcctctg	5	16	6	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66529307	G	G	66529307	1	3	86	0	1	0	0	0	0	0	0	0	1676	928	32	4		4	C11orf80	11	66529307	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	270	66529307	68477209	559	89974											
TBX10	347853	broad.mit.edu	37	chr11	67401814	67401814	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcccgccaccagccaggccGagctgtggaaggcatacctg	13	15	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67401814	A	A	67401814	3	1	86	1	0	0	0	0	1	0	0	0	15773	1059	37	4	782	4	TBX10	11	67401814	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	872507	67401814	67604702	560	89975											
SUV420H1	51111	broad.mit.edu	37	chr11	67941312	67941312	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggctccattttgttctgaTgagtatctattacatggcaa	8	7	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67941312	A	A	67941312	2	1	86	1	0	0	0	0	0	0	0	1	15532	1451	51	5		5	SUV420H1	11	67941312	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	539498	67941312	67065204	561	89976											
CPT1A	1374	broad.mit.edu	37	chr11	68529216	68529216	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagttgagcagttacggatCtaagttagccaccgcacccg	10	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68529216	G	G	68529216	1	3	86	0	1	0	0	0	0	0	0	0	3863	928	32	4		4	CPT1A	11	68529216	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	587904	68529216	66477300	562	89977											
P4HA3	283208	broad.mit.edu	37	chr11	74013232	74013232	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttctgcccttaaaattgcAtaatcttagggcaagttatt	7	7	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74013232	G	G	74013232	1	3	86	0	1	0	0	0	0	0	0	0	11452	232	8	5		5	P4HA3	11	74013232	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	5484016	74013232	60993284	563	89978											
C11orf30	56946	broad.mit.edu	37	chr11	76250572	76250572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaacataaataacctctgGgggtagactagattcttgca	11	7	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76250572	T	T	76250572	1	4	86	0	1	0	0	0	0	0	0	0	1648	1247	43	2		2	C11orf30	11	76250572	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2237340	76250572	58755944	564	89979											
CAPN5	726	broad.mit.edu	37	chr11	76823721	76823721	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacttccacttctggcgcttCggggaatgggtggacgtggt	15	10	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76823721	T	T	76823721	2	4	86	1	0	0	0	0	0	0	0	1	2655	883	31	4		4	CAPN5	11	76823721	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	573149	76823721	58182795	565	89980											
PAK1	5058	broad.mit.edu	37	chr11	77043672	77043672	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtaggaagtggtagaagaGaagcctagttctataatatc	12	4	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77043672	C	C	77043672	1	2	86	0	1	0	0	0	0	0	0	0	11493	957	33	4		4	PAK1	11	77043672	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	219951	77043672	57962844	566	89981											
RSF1	51773	broad.mit.edu	37	chr11	77378100	77378100	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcactggctgtgctgttGtccttgggggtctgagactt	14	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77378100	C	C	77378100	3	2	86	1	0	0	0	0	1	0	0	0	13810	1368	48	4	141	4	RSF1	11	77378100	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	334428	77378100	57628416	567	89982											
ALG8	79053	broad.mit.edu	37	chr11	77838394	77838394	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaggtgaaaatTaaaacttacctcataatacc	3	6	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77838394	C	C	77838394	1	2	86	0	1	0	0	0	0	0	0	0	523	1769	61	5		5	ALG8	11	77838394	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	460294	77838394	57168122	568	89983											
FAT3	120114	broad.mit.edu	37	chr11	92564777	92564777	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccactcattttcctgtgtCtctcccacaggcatcaatag	6	15	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92564777	G	G	92564777	1	3	86	0	1	0	0	0	0	0	0	0	5748	928	32	4		4	FAT3	11	92564777	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	14726383	92564777	42441739	569	89984											
FAT3	120114	broad.mit.edu	37	chr11	92571014	92571014	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcacttgtccctttgcattCagctttcttcctctgctgtg	7	13	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92571014	G	G	92571014	1	3	86	0	1	0	0	0	0	0	0	0	5748	841	29	4		4	FAT3	11	92571014	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6237	92571014	42435502	570	89985											
C11orf54	28970	broad.mit.edu	37	chr11	93493071	93493071	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atactacaatgataatgcttGatttttaggataatctttaa	5	4	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93493071	C	C	93493071	1	2	86	0	1	0	0	0	0	0	0	0	1661	1305	45	4		4	C11orf54	11	93493071	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	922057	93493071	41513445	571	89986											
CNTN5	53942	broad.mit.edu	37	chr11	99827588	99827588	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccttcctttgtggcggaaGacagccggcggttcatctcc	11	14	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99827588	C	C	99827588	3	2	86	1	0	0	0	0	1	0	0	0	3676	942	33	4	746	4	CNTN5	11	99827588	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6334517	99827588	35178928	572	89987											
NPAT	4863	broad.mit.edu	37	chr11	108059914	108059914	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaatttggccacttggtcGagtaacctgtgtacctgtgg	12	8	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108059914	A	A	108059914	4	1	86	1	0	0	0	0	0	1	0	0	10661	1066	37	4	3860	4	NPAT	11	108059914	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	8232326	108059914	26946602	573	89988											
C11orf87	399947	broad.mit.edu	37	chr11	109294448	109294448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccccaacgccagcggcaGcggcaacacgggtgcccgcg	13	18	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109294448	T	T	109294448	3	4	86	1	0	0	0	0	1	0	0	0	1681	971	34	3	91	3	C11orf87	11	109294448	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1234534	109294448	25712068	574	89989											
PIH1D2	120379	broad.mit.edu	37	chr11	111938705	111938705	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatgtaatctgtacttctCagatacttcaatcaataaat	4	8	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111938705	G	G	111938705	3	3	86	1	0	0	0	0	1	0	0	0	12002	835	29	4	171	4	PIH1D2	11	111938705	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2644257	111938705	23067811	575	89990											
ZW10	9183	broad.mit.edu	37	chr11	113618191	113618191	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccactttactatatgcatCtcaaaatgagttgctttctc	4	10	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113618191	G	G	113618191	1	3	86	0	1	0	0	0	0	0	0	0	18376	928	32	4		4	ZW10	11	113618191	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1679486	113618191	21388325	576	89991											
ZBTB16	7704	broad.mit.edu	37	chr11	114121118	114121118	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcggccatgatcaagcacctGagaacgcacaacggcgcctc	10	15	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114121118	T	T	114121118	2	4	86	1	0	0	0	0	0	0	0	1	17652	1277	45	3		3	ZBTB16	11	114121118	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	502927	114121118	20885398	577	89992											
RBM7	10179	broad.mit.edu	37	chr11	114271505	114271505	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accaggtaagcggctgggttCggccctttgcctttcgtttt	12	11	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114271505	A	A	114271505	1	1	86	0	1	0	0	0	0	0	0	0	13253	899	31	3		3	RBM7	11	114271505	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	150387	114271505	20735011	578	89993											
CADM1	23705	broad.mit.edu	37	chr11	115101985	115101985	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaatacttttgtttcatggGcatgttttgtatttctccat	7	6	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115101985	A	A	115101985	1	1	86	0	1	0	0	0	0	0	0	0	2592	1218	42	4		4	CADM1	11	115101985	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	830480	115101985	19904531	579	89994											
APOC3	345	broad.mit.edu	37	chr11	116701383	116701383	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgggactgggctgggggCagggtggaggcaacttgggg	24	5	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116701383	T	T	116701383	1	4	86	0	1	0	0	0	0	0	0	0	801	725	25	4		4	APOC3	11	116701383	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1599398	116701383	18305133	580	89995											
UBE4A	9354	broad.mit.edu	37	chr11	118235726	118235726	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctattgtgtcatctgccctCttgtgtctaatacctgtcct	7	12	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118235726	G	G	118235726	1	3	86	0	1	0	0	0	0	0	0	0	17008	928	32	4		4	UBE4A	11	118235726	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1534343	118235726	16770790	581	89996											
C2CD2L	9854	broad.mit.edu	37	chr11	118980898	118980898	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacctgcgtagaccaatctGagcataccatggtaagggtc	11	10	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118980898	A	A	118980898	3	1	86	1	0	0	0	0	1	0	0	0	2175	1291	45	4	445	4	C2CD2L	11	118980898	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	745172	118980898	16025618	582	89997											
CBL	867	broad.mit.edu	37	chr11	119155518	119155518	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaggaagtgctagagtcTctggaagttttttaagaggg	13	4	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119155518	C	C	119155518	1	2	86	0	1	0	0	0	0	0	0	0	2726	1566	54	5		5	CBL	11	119155518	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	174620	119155518	15850998	583	89998											
SORL1	6653	broad.mit.edu	37	chr11	121441018	121441018	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgttaagcacttaccattaCtcagaagcctggttggctct	8	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121441018	T	T	121441018	1	4	86	0	1	0	0	0	0	0	0	0	15048	580	20	4		4	SORL1	11	121441018	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2285500	121441018	13565498	584	89999											
HSPA8	3312	broad.mit.edu	37	chr11	122929250	122929250	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctgtgtatgtgtaactcTagtttctcttagctagacgc	8	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122929250	C	C	122929250	1	2	86	0	1	0	0	0	0	0	0	0	7485	1537	53	5		5	HSPA8	11	122929250	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1488232	122929250	12077266	585	90000											
OR6X1	390260	broad.mit.edu	37	chr11	123624576	123624576	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggattgcggacagaatgtaGatataagaaatcatattaaa	9	3	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123624576	C	C	123624576	3	2	86	1	0	0	0	0	1	0	0	0	11306	932	33	4	289	4	OR6X1	11	123624576	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	695326	123624576	11381940	586	90001											
OR8D4	338662	broad.mit.edu	37	chr11	123777198	123777198	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttcaggattaactgaacaAgcagagcttcagctgcccct	8	12	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123777198	T	T	123777198	3	4	86	1	0	0	0	0	1	0	0	0	11327	69	3	5	62	5	OR8D4	11	123777198	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	152622	123777198	11229318	587	90002											
OR6T1	219874	broad.mit.edu	37	chr11	123814447	123814447	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggctgttacaatgtaggtCaccattaaccccaggaacac	9	11	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123814447	A	A	123814447	2	1	86	1	0	0	0	0	0	0	0	1	11304	813	29	3		3	OR6T1	11	123814447	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	37249	123814447	11192069	588	90003											
VWA5A	4013	broad.mit.edu	37	chr11	123995028	123995028	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acagacagaaacacaggtagGaagaaaatgtgatttccggg	12	6	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123995028	C	C	123995028	1	2	86	0	1	0	0	0	0	0	0	0	17369	1189	41	4		4	VWA5A	11	123995028	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	180581	123995028	11011488	589	90004											
ESAM	90952	broad.mit.edu	37	chr11	124628319	124628319	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggctgggatgaagacacctCcccgtgcaaggtgtaccacg	13	12	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124628319	G	G	124628319	3	3	86	1	0	0	0	0	1	0	0	0	5289	864	30	4	1021	4	ESAM	11	124628319	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	633291	124628319	10378197	590	90005											
ROBO4	54538	broad.mit.edu	37	chr11	124763562	124763562	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccaccctcccttacttcaGacctcccctttcacctctca	2	21	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124763562	A	A	124763562	1	1	86	0	1	0	0	0	0	0	0	0	13627	957	33	4		4	ROBO4	11	124763562	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	135243	124763562	10242954	591	90006											
ROBO4	54538	broad.mit.edu	37	chr11	124764190	124764190	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcctggcatatgggtggCgatttccagctgggtctgct	16	9	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124764190	T	T	124764190	3	4	86	1	0	0	0	0	1	0	0	0	13627	768	27	4	1842	4	ROBO4	11	124764190	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	628	124764190	10242326	592	90007											
PKNOX2	63876	broad.mit.edu	37	chr11	125301229	125301229	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctggaggaggaggtcgacGagctgcagacgacaaatgtc	16	8	0	1	rs71474144		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125301229	T	T	125301229	4	4	86	1	0	0	0	0	0	1	0	0	12078	1059	37	3	1398	3	PKNOX2	11	125301229	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	537039	125301229	9705287	593	90008											
NFRKB	4798	broad.mit.edu	37	chr11	129740166	129740166	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgattgccacctgaatgggGagaagcagcactgatgaggg	16	7	0	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129740166	T	T	129740166	1	4	86	0	1	0	0	0	0	0	0	0	10479	1189	41	3		3	NFRKB	11	129740166	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4438937	129740166	5266350	594	90009											
NTM	50863	broad.mit.edu	37	chr11	132177677	132177677	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgcctccaatgacgtGgccgcgcccgtggtacggag	15	13	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132177677	T	T	132177677	2	4	86	1	0	0	0	0	0	0	0	1	10794	1335	47	2		2	NTM	11	132177677	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2437511	132177677	2828839	595	90010											
IGSF9B	22997	broad.mit.edu	37	chr11	133795691	133795691	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggggatgccatcgtcgagCaactcccagcgctctgcgac	12	16	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133795691	T	T	133795691	2	4	86	1	0	0	0	0	0	0	0	1	7676	709	25	4		4	IGSF9B	11	133795691	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1618014	133795691	1210825	596	90011											
IGSF9B	22997	broad.mit.edu	37	chr11	133799692	133799692	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtgcctggagatcaagtgGagacctctcagactgaaaag	13	8	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133799692	T	T	133799692	1	4	86	0	1	0	0	0	0	0	0	0	7676	1189	41	3		3	IGSF9B	11	133799692	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4001	133799692	1206824	597	90012											
JAM3	83700	broad.mit.edu	37	chr11	134015694	134015694	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgtcaggcaggtatcaggGagtgggtcagggaggaacat	18	6	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134015694	A	A	134015694	1	1	86	0	1	0	0	0	0	0	0	0	8014	1189	41	4		4	JAM3	11	134015694	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	216002	134015694	990822	598	90013											
SLC6A12	6539	broad.mit.edu	37	chr12	318891	318891	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtaggcactgcccagcTgccagcacacagctctcccc	9	19	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	318891	G	G	318891	1	3	86	0	1	0	0	0	0	0	0	0	14789	1595	55	5		5	SLC6A12	12	318891	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08		318891	133533004	599	90014											
WNK1	65125	broad.mit.edu	37	chr12	980452	980452	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaggggcagagccagggtCagccatcctcaagtagctta	12	12	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	980452	T	T	980452	4	4	86	1	0	0	0	0	0	1	0	0	17504	827	29	4	3697	4	WNK1	12	980452	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	661561	980452	132871443	600	90015											
TULP3	7289	broad.mit.edu	37	chr12	3042500	3042500	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggacttgctaagcactggctGaatgaatatgtaggacaacc	11	8	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3042500	A	A	3042500	1	1	86	0	1	0	0	0	0	0	0	0	16901	1305	45	4		4	TULP3	12	3042500	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2062048	3042500	130809395	601	90016											
CD163L1	283316	broad.mit.edu	37	chr12	7527343	7527343	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccatccactaggcggagcCgtttgtcctcttagaggaga	11	13	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7527343	T	T	7527343	3	4	86	1	0	0	0	0	1	0	0	0	2998	652	23	4	1285	4	CD163L1	12	7527343	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4484843	7527343	126324552	602	90017											
FOXJ2	55810	broad.mit.edu	37	chr12	8201170	8201170	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggagggagagtccaaaacTtggaaatgcaactgctaatc	12	7	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8201170	G	G	8201170	1	3	86	0	1	0	0	0	0	0	0	0	6072	1624	56	5		5	FOXJ2	12	8201170	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	673827	8201170	125650725	603	90018											
A2ML1	144568	broad.mit.edu	37	chr12	9010022	9010022	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacagggaattccagcccctCaagtgtcccatatccttgaa	7	13	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9010022	G	G	9010022	1	3	86	0	1	0	0	0	0	0	0	0	5	841	29	4		4	A2ML1	12	9010022	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	808852	9010022	124841873	604	90019											
LRP6	4040	broad.mit.edu	37	chr12	12353440	12353440	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttccaggtattttctgtttGttcttttttgttttcacttc	5	7	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12353440	C	C	12353440	1	2	86	0	1	0	0	0	0	0	0	0	9049	1392	48	4		4	LRP6	12	12353440	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3343418	12353440	121498455	605	90020											
MGP	4256	broad.mit.edu	37	chr12	15035930	15035930	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggactttagctctccatCtctgctgaggggatatgaag	11	9	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15035930	G	G	15035930	3	3	86	1	0	0	0	0	1	0	0	0	9651	913	32	4	173	4	MGP	12	15035930	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2682490	15035930	118815965	606	90021											
RERGL	79785	broad.mit.edu	37	chr12	18234050	18234050	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccaaaaaaaaattgcatAcaaaggttagtttaattatc	4	5	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18234050	G	G	18234050	1	3	86	0	1	0	0	0	0	0	0	0	13341	406	14	5		5	RERGL	12	18234050	3'UTR	SNP	A	TCGA-17-Z057-01A-01W-0747-08	3198120	18234050	115617845	607	90022											
SLCO1B1	10599	broad.mit.edu	37	chr12	21392104	21392104	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccttctgctggggcagAtagtgaaacacattgttaag	11	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21392104	C	C	21392104	3	2	86	1	0	0	0	0	1	0	0	0	14837	333	12	5	2111	5	SLCO1B1	12	21392104	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	3158054	21392104	112459791	608	90023											
KCNJ8	3764	broad.mit.edu	37	chr12	21919520	21919520	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaaacccaatggtaacttGaacttcaatggagaagagaa	8	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21919520	C	C	21919520	3	2	86	1	0	0	0	0	1	0	0	0	8126	1299	45	4	866	4	KCNJ8	12	21919520	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	527416	21919520	111932375	609	90024											
BHLHE41	79365	broad.mit.edu	37	chr12	26276834	26276834	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agacaggttataaatgatttCttgccttcagctgggagcac	10	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26276834	G	G	26276834	1	3	86	0	1	0	0	0	0	0	0	0	1430	928	32	4		4	BHLHE41	12	26276834	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4357314	26276834	107575061	610	90025											
LRRK2	120892	broad.mit.edu	37	chr12	40713922	40713922	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagtattttaagctcctaGaaaaattccagattgctttg	6	8	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40713922	A	A	40713922	3	1	86	1	0	0	0	0	1	0	0	0	9120	943	33	4	5094	4	LRRK2	12	40713922	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	14437088	40713922	93137973	611	90026											
LRRK2	120892	broad.mit.edu	37	chr12	40717176	40717176	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccttataatttagaaaataGatttcataattatattgtca	3	4	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40717176	C	C	40717176	1	2	86	0	1	0	0	0	0	0	0	0	9120	957	33	4		4	LRRK2	12	40717176	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3254	40717176	93134719	612	90027											
PDZRN4	29951	broad.mit.edu	37	chr12	41582248	41582248	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgctccccctttcttcccCatccctaacatgggctttgc	5	18	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41582248	A	A	41582248	1	1	86	0	1	0	0	0	0	0	0	0	11804	609	21	2		2	PDZRN4	12	41582248	5'Flank	SNP	C	TCGA-17-Z057-01A-01W-0747-08	865072	41582248	92269647	613	90028											
ADAMTS20	80070	broad.mit.edu	37	chr12	43822330	43822330	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccatggccacaggaagctGaacactgatcaaaaatttag	8	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43822330	C	C	43822330	4	2	86	1	0	0	0	0	0	1	0	0	266	1294	45	4	2128	4	ADAMTS20	12	43822330	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2240082	43822330	90029565	614	90029											
ARID2	196528	broad.mit.edu	37	chr12	46244727	46244727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaggtcaaacttatgcaCcagccattcaccaaattgtt	5	11	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46244727	A	A	46244727	3	1	86	1	0	0	0	0	1	0	0	0	917	507	18	3	2879	3	ARID2	12	46244727	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2422397	46244727	87607168	615	90030											
RPAP3	79657	broad.mit.edu	37	chr12	48080704	48080704	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattcccctgttattttgtaGagagatatggagaataaaaa	8	5	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48080704	C	C	48080704	1	2	86	0	1	0	0	0	0	0	0	0	13654	957	33	4		4	RPAP3	12	48080704	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1835977	48080704	85771191	616	90031											
TMEM106C	79022	broad.mit.edu	37	chr12	48360468	48360468	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtatcttattttcaggtGaattttaccgggaaggccga	11	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48360468	A	A	48360468	2	1	86	1	0	0	0	0	0	0	0	1	16145	1277	45	4		4	TMEM106C	12	48360468	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	279764	48360468	85491427	617	90032											
MLL2	8085	broad.mit.edu	37	chr12	49438022	49438022	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccactcaacacctccgcctGtgcagcaggcccctttttcg	7	19	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49438022	A	A	49438022	4	1	86	1	0	0	0	0	0	1	0	0	9714	1386	48	4	11600	4	MLL2	12	49438022	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1077554	49438022	84413873	618	90033											
DIP2B	57609	broad.mit.edu	37	chr12	51126161	51126161	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgcagaccagagggatcAacctctcctgcgtccggacc	10	15	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51126161	C	C	51126161	3	2	86	1	0	0	0	0	1	0	0	0	4568	130	5	5	3949	5	DIP2B	12	51126161	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1688139	51126161	82725734	619	90034											
KRT3	3850	broad.mit.edu	37	chr12	53185272	53185272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggcccttcctgacatGcaatggattatcccatctta	6	15	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53185272	T	T	53185272	1	4	86	0	1	0	0	0	0	0	0	0	8537	1334	46	3		3	KRT3	12	53185272	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2059111	53185272	80666623	620	90035											
HOXC6	3223	broad.mit.edu	37	chr12	54423644	54423644	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaaaaaagaatctaatctCacatccactctctcgggggg	9	10	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54423644	T	T	54423644	2	4	86	1	0	0	0	0	0	0	0	1	7382	813	29	4		4	HOXC6	12	54423644	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1238372	54423644	79428251	621	90036											
KIAA0748	9840	broad.mit.edu	37	chr12	55357478	55357478	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgagccctgctgtgaaaAtctaaaggaaaagggaagta	11	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55357478	T	T	55357478	1	4	86	0	1	0	0	0	0	0	0	0	8260	116	4	5		5	KIAA0748	12	55357478	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	933834	55357478	78494417	622	90037											
KIAA0748	9840	broad.mit.edu	37	chr12	55368344	55368344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcagcacagaggcctcCatggccctggctcagacttc	12	15	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55368344	A	A	55368344	3	1	86	1	0	0	0	0	1	0	0	0	8260	594	21	2	1598	2	KIAA0748	12	55368344	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	10866	55368344	78483551	623	90038											
ITGA7	3679	broad.mit.edu	37	chr12	56082520	56082521	+	Intron	INS	-	G	G													cgtctcaaaaaaaaaaaaaaINSggggggggatgctgcatttg					rs57885211		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56082521	G	G	56082520	6	5	86	0	1	1	1	0	0	0	0	0	7951	87	3	0		0	ITGA7	12	56082520	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	714176	56082520	77769375	624	90039											
DGKA	1606	broad.mit.edu	37	chr12	56335227	56335227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaggaacacacaaagagGgtgaggttcagaagatcacc	12	8	2	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56335227	T	T	56335227	1	4	86	0	1	0	0	0	0	0	0	0	4505	1247	43	2		2	DGKA	12	56335227	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	252707	56335227	77516668	625	90040											
DDIT3	1649	broad.mit.edu	37	chr12	57910625	57910625	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agattcaccattcggtcaatCagagctcggcgagtcgcctc	10	13	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57910625	G	G	57910625	2	3	86	1	0	0	0	0	0	0	0	1	4363	813	29	4		4	DDIT3	12	57910625	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1575398	57910625	75941270	626	90041											
LRIG3	121227	broad.mit.edu	37	chr12	59271635	59271635	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgcaaaaatgatggtgtttCtgaaataacaagttatgctt	8	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59271635	G	G	59271635	5	3	86	1	0	0	0	0	0	0	1	0	9033	927	32	4	1296	4	LRIG3	12	59271635	Splice_Site	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1361010	59271635	74580260	627	90042											
THAP2	83591	broad.mit.edu	37	chr12	72058219	72058219	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcctcgattgtccagcctCtgccagaagaaagcttagca	9	13	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72058219	G	G	72058219	1	3	86	0	1	0	0	0	0	0	0	0	15967	928	32	4		4	THAP2	12	72058219	5'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	12786584	72058219	61793676	628	90043											
RAB21	23011	broad.mit.edu	37	chr12	72175918	72175918	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctagtagaaatcttcctCtttatacgttttgctttacc	4	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72175918	T	T	72175918	1	4	86	0	1	0	0	0	0	0	0	0	13016	928	32	4		4	RAB21	12	72175918	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	117699	72175918	61675977	629	90044											
NAV3	89795	broad.mit.edu	37	chr12	78415495	78415495	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgactagtgactataactgCtatttctttctattttcatg	6	7	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78415495	G	G	78415495	1	3	86	0	1	0	0	0	0	0	0	0	10279	812	28	4		4	NAV3	12	78415495	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6239577	78415495	55436400	630	90045											
EEA1	8411	broad.mit.edu	37	chr12	93206841	93206841	+	Frame_Shift_Del	DEL	G	-	-													cagtttttgctgcttctgctGatagtaatagttcggttttg							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93206841	-	-	93206841	7	5	86	1	0	1	0	1	0	0	0	0	4961	1294	45	0	2333	0	EEA1	12	93206841	Frame_Shift_Del	DEL	G	TCGA-17-Z057-01A-01W-0747-08	14791346	93206841	40645054	631	90046											
PLXNC1	10154	broad.mit.edu	37	chr12	94620960	94620960	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcgagaagacatcaggAggaggaagacccaaggagaa	15	7	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94620960	T	T	94620960	2	4	86	1	0	0	0	0	0	0	0	1	12221	291	11	5		5	PLXNC1	12	94620960	Silent	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1414119	94620960	39230935	632	90047											
ANKS1B	56899	broad.mit.edu	37	chr12	99188695	99188695	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaaagggaagcagttggaaGagaaaatggcacagcagcta	14	6	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99188695	T	T	99188695	1	4	86	0	1	0	0	0	0	0	0	0	689	957	33	3		3	ANKS1B	12	99188695	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4567735	99188695	34663200	633	90048											
ANKS1B	56899	broad.mit.edu	37	chr12	100169438	100169438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccacgccttctaaataCtctgtgtgtatacatttttg	5	11	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100169438	A	A	100169438	3	1	86	1	0	0	0	0	1	0	0	0	689	579	20	3	3265	3	ANKS1B	12	100169438	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	980743	100169438	33682457	634	90049											
SCYL2	55681	broad.mit.edu	37	chr12	100708474	100708474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactaccataactcttccaAgaaaataatataactttgcc	2	10	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100708474	G	G	100708474	1	3	86	0	1	0	0	0	0	0	0	0	14061	87	3	5		5	SCYL2	12	100708474	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	539036	100708474	33143421	635	90050											
PAH	5053	broad.mit.edu	37	chr12	103271215	103271215	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggagaggcactgaaaaaatCtcatcctacgggccatggac	11	10	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103271215	G	G	103271215	1	3	86	0	1	0	0	0	0	0	0	0	11488	928	32	4		4	PAH	12	103271215	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2562741	103271215	30580680	636	90051											
GLT8D2	83468	broad.mit.edu	37	chr12	104387344	104387344	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacaaactcagataaagtcGaatctgatattgtaaatgat	6	7	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104387344	T	T	104387344	1	4	86	0	1	0	0	0	0	0	0	0	6534	1073	37	3		3	GLT8D2	12	104387344	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1116129	104387344	29464551	637	90052											
NOS1	4842	broad.mit.edu	37	chr12	117768312	117768312	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactctggttgctttcttcGcggggtcctggcctgggggc	16	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117768312	A	A	117768312	3	1	86	1	0	0	0	0	1	0	0	0	10636	1087	38	4	3853	4	NOS1	12	117768312	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	13380968	117768312	16083583	638	90053											
COQ5	84274	broad.mit.edu	37	chr12	120942801	120942801	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtgcctgagcaagacaagGaacaacaggacacactcctc	10	12	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120942801	T	T	120942801	1	4	86	0	1	0	0	0	0	0	0	0	3780	1189	41	3		3	COQ5	12	120942801	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3174489	120942801	12909094	639	90054											
RNF10	9921	broad.mit.edu	37	chr12	120984337	120984337	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagacttttaacaagatgcCtcctcaaaggggcggcggca	11	11	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120984337	T	T	120984337	3	4	86	1	0	0	0	0	1	0	0	0	13533	681	24	4	293	4	RNF10	12	120984337	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	41536	120984337	12867558	640	90055											
ANAPC5	51433	broad.mit.edu	37	chr12	121790157	121790158	+	5'UTR	INS	-	A	A													ggccatggcggcccgagactINSaagtctcgggcccgcggcgc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121790158	A	A	121790157	6	5	86	0	1	1	1	0	0	0	0	0	605	1537	53	0		0	ANAPC5	12	121790157	5'UTR	INS	-	TCGA-17-Z057-01A-01W-0747-08	805820	121790157	12061738	641	90056											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124239218	124239218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccacgtgaacttacactaTtcactacttaatacacagct	4	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124239218	C	C	124239218	1	2	86	0	1	0	0	0	0	0	0	0	1173	1508	52	5		5	ATP6V0A2	12	124239218	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2449061	124239218	9612677	642	90057											
STX2	2054	broad.mit.edu	37	chr12	131283117	131283117	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctttttttgtttcttcttTagcgtgttctacatagtctg	7	7	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131283117	C	C	131283117	3	2	86	1	0	0	0	0	1	0	0	0	15463	1763	61	5	217	5	STX2	12	131283117	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	7043899	131283117	2568778	643	90058											
DDX51	317781	broad.mit.edu	37	chr12	132626019	132626019	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggccctgagctcaaagccCaggcccctggggcggggacc	16	16	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132626019	G	G	132626019	1	3	86	0	1	0	0	0	0	0	0	0	4402	609	21	4		4	DDX51	12	132626019	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1342902	132626019	1225876	644	90059											
SGCG	6445	broad.mit.edu	37	chr13	23808791	23808791	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaacaaaagatggactgcgCttggaaggggaatcagaatt	13	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23808791	T	T	23808791	2	4	86	1	0	0	0	0	0	0	0	1	14316	784	28	4		4	SGCG	13	23808791	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08		23808791	91361087	645	90060											
LNX2	222484	broad.mit.edu	37	chr13	28122551	28122551	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaacatgggaactagtgcaGagtggctcatgcccacggtt	12	10	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28122551	A	A	28122551	3	1	86	1	0	0	0	0	1	0	0	0	8940	942	33	4	82	4	LNX2	13	28122551	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4313760	28122551	87047327	646	90061											
FLT1	2321	broad.mit.edu	37	chr13	28896409	28896409	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagactgacctttctggaaGacaggaactccatgcctctg	9	12	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28896409	A	A	28896409	3	1	86	1	0	0	0	0	1	0	0	0	5999	942	33	4	1011	4	FLT1	13	28896409	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	773858	28896409	86273469	647	90062											
FLT1	2321	broad.mit.edu	37	chr13	28903844	28903844	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcagtcatcagagctttgTactcgctggccgtggccccc	11	15	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28903844	A	A	28903844	3	1	86	1	0	0	0	0	1	0	0	0	5999	1638	57	5	1449	5	FLT1	13	28903844	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	7435	28903844	86266034	648	90063											
BRCA2	675	broad.mit.edu	37	chr13	32913437	32913437	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtagaaaaagaaacagcaAaaagtcctgcaacttgttac	7	7	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32913437	G	G	32913437	3	3	86	1	0	0	0	0	1	0	0	0	1508	15	1	5	4983	5	BRCA2	13	32913437	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	4009593	32913437	82256441	649	90064											
MAB21L1	4081	broad.mit.edu	37	chr13	36049557	36049557	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcagccccccatctgcagtCtgttctctgcctccgcgaac	8	18	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36049557	A	A	36049557	3	1	86	1	0	0	0	0	1	0	0	0	9229	913	32	3	364	3	MAB21L1	13	36049557	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3136120	36049557	79120321	650	90065											
STOML3	161003	broad.mit.edu	37	chr13	39542500	39542500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttggccccaacactaggCagttctccctccatgtgtga	9	13	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39542500	A	A	39542500	1	1	86	0	1	0	0	0	0	0	0	0	15433	725	25	3		3	STOML3	13	39542500	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3492943	39542500	75627378	651	90066											
KIAA0564	23078	broad.mit.edu	37	chr13	42273037	42273037	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgaagtctctagagaaaaGaagatattagcctgcctttg	10	6	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42273037	C	C	42273037	1	2	86	0	1	0	0	0	0	0	0	0	8255	957	33	4		4	KIAA0564	13	42273037	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2730537	42273037	72896841	652	90067											
DGKH	160851	broad.mit.edu	37	chr13	42788619	42788619	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcaaaaaagttttttattCatttgtttcatttttgcttt	3	5	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42788619	G	G	42788619	1	3	86	0	1	0	0	0	0	0	0	0	4510	841	29	4		4	DGKH	13	42788619	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	515582	42788619	72381259	653	90068											
DNAJC15	29103	broad.mit.edu	37	chr13	43660049	43660049	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcagattaaagtcatatAtgatatatagttgagatgga	8	3	2	3	rs75881215		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43660049	G	G	43660049	1	3	86	0	1	0	0	0	0	0	0	0	4674	464	16	5		5	DNAJC15	13	43660049	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	871430	43660049	71509829	654	90069											
SLC25A30	253512	broad.mit.edu	37	chr13	45978310	45978310	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tataagtggaaaacccacctCatggacctttaaaagttagt	7	8	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45978310	G	G	45978310	1	3	86	0	1	0	0	0	0	0	0	0	14608	841	29	4		4	SLC25A30	13	45978310	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2318261	45978310	69191568	655	90070											
COG3	83548	broad.mit.edu	37	chr13	46104708	46104708	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctttggtaatatcatgaaAgatacatcgcttccactcgc	7	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46104708	G	G	46104708	1	3	86	0	1	0	0	0	0	0	0	0	3691	87	3	5		5	COG3	13	46104708	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	126398	46104708	69065170	656	90071											
ZC3H13	23091	broad.mit.edu	37	chr13	46584555	46584555	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctagctgaagacgacttcGggcttgattttcgcttcgga	12	9	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46584555	C	C	46584555	3	2	86	1	0	0	0	0	1	0	0	0	17691	1116	39	4	4064	4	ZC3H13	13	46584555	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	479847	46584555	68585323	657	90072											
RB1	5925	broad.mit.edu	37	chr13	48893942	48893942	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagaagctgttctatttcCgccttaatgctctgctcgaa	7	11	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48893942	T	T	48893942	1	4	86	0	1	0	0	0	0	0	0	0	13206	667	23	4		4	RB1	13	48893942	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2309387	48893942	66275936	658	90073											
RB1	5925	broad.mit.edu	37	chr13	49039368	49039369	+	Frame_Shift_Ins	INS	-	T	T													cttgtcaccaatacctcacaINSttcctcgaagcccttacaag							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49039369	T	T	49039368	7	5	86	1	0	1	1	0	0	0	0	0	13206	217	8	0	2443	0	RB1	13	49039368	Frame_Shift_Ins	INS	-	TCGA-17-Z057-01A-01W-0747-08	145426	49039368	66130510	659	90074											
RCBTB2	1102	broad.mit.edu	37	chr13	49073966	49073966	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcctctgtgaggaccacGttcttctctcgaaggtgcac	11	12	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49073966	A	A	49073966	1	1	86	0	1	0	0	0	0	0	0	0	13280	1160	40	4		4	RCBTB2	13	49073966	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	34598	49073966	66095912	660	90075											
KCNRG	283518	broad.mit.edu	37	chr13	50589843	50589843	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaactcaccagcttttaTtacccactgaattttcagac	5	11	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50589843	C	C	50589843	2	2	86	1	0	0	0	0	0	0	0	1	8157	1490	52	5		5	KCNRG	13	50589843	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1515877	50589843	64580035	661	90076											
UTP14C	9724	broad.mit.edu	37	chr13	52599143	52599143	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagttcttttgataaaatgAtaatactctggaaatctgca	6	5	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52599143	G	G	52599143	1	3	86	0	1	0	0	0	0	0	0	0	17223	348	12	5		5	UTP14C	13	52599143	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2009300	52599143	62570735	662	90077											
PCDH9	5101	broad.mit.edu	37	chr13	67800888	67800889	+	Missense_Mutation	DNP	AC	CA	CA													tattgtcattctcatccagaAcagtaacaatcacagccgct							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	67800889	CA	CA	67800888	3	2	86	1	0	0	0	0	1	0	0	0	11612	43	2	5	2044	5	PCDH9	13	67800888	Missense_Mutation	DNP	AC	TCGA-17-Z057-01A-01W-0747-08	15201745	67800888	47368990	663	90078											
PCDH9	5101	broad.mit.edu	37	chr13	67801921	67801944	+	In_Frame_Del	DEL	AGGTATCTTTCTGTTCTCTATCCA	-	-													tactttgattttcatcacatAggtatctttctgttctctat							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67801944	-	-	67801921	7	5	86	1	0	1	0	1	0	0	0	0	11612	420	15	0	3077	0	PCDH9	13	67801921	In_Frame_Del	DEL	AGGTATCTTTCTGTTCTCTATCCA	TCGA-17-Z057-01A-01W-0747-08	1033	67801921	47367957	664	90079											
MYCBP2	23077	broad.mit.edu	37	chr13	77836126	77836126	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actatataaactaatcaacaGattgtattttaatctcttaa	2	6	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77836126	C	C	77836126	1	2	86	0	1	0	0	0	0	0	0	0	10112	957	33	4		4	MYCBP2	13	77836126	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	10034205	77836126	37333752	665	90080											
GPC5	2262	broad.mit.edu	37	chr13	93518747	93518747	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcgatttcttctctctctGcatatgcctggaataagaga	7	10	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93518747	A	A	93518747	1	1	86	0	1	0	0	0	0	0	0	0	6666	1334	46	4		4	GPC5	13	93518747	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	15682621	93518747	21651131	666	90081											
HS6ST3	266722	broad.mit.edu	37	chr13	97484854	97484854	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctcttcatatgtgtgatgGaagaagccccaccccagatg	9	12	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97484854	A	A	97484854	3	1	86	1	0	0	0	0	1	0	0	0	7439	1174	41	4	824	4	HS6ST3	13	97484854	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3966107	97484854	17685024	667	90082											
HS6ST3	266722	broad.mit.edu	37	chr13	97485409	97485409	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagatggggctgcagaagGgactgtcaccgaggactaca	15	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97485409	A	A	97485409	3	1	86	1	0	0	0	0	1	0	0	0	7439	1232	43	4	1379	4	HS6ST3	13	97485409	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	555	97485409	17684469	668	90083											
NALCN	259232	broad.mit.edu	37	chr13	101755760	101755760	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttacattttctgacagccGactggccacaacttttcatt	5	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101755760	A	A	101755760	1	1	86	0	1	0	0	0	0	0	0	0	10242	1073	37	4		4	NALCN	13	101755760	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4270351	101755760	13414118	669	90084											
NALCN	259232	broad.mit.edu	37	chr13	101760201	101760201	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaatgcaaaatatattAtcagttaaaaaacttaaaac	3	4	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101760201	G	G	101760201	1	3	86	0	1	0	0	0	0	0	0	0	10242	464	16	5		5	NALCN	13	101760201	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	4441	101760201	13409677	670	90085											
LIG4	3981	broad.mit.edu	37	chr13	108860946	108860946	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaatcagttacccaactttCttttaggattttaaactttc	4	8	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108860946	T	T	108860946	3	4	86	1	0	0	0	0	1	0	0	0	8855	922	32	4	68	4	LIG4	13	108860946	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	7100745	108860946	6308932	671	90086											
LAMP1	3916	broad.mit.edu	37	chr13	113976821	113976821	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgaaggggaggcacactttCtggcaaacgtttctcaaatc	10	10	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113976821	G	G	113976821	1	3	86	0	1	0	0	0	0	0	0	0	8689	928	32	4		4	LAMP1	13	113976821	3'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5115875	113976821	1193057	672	90087											
TMCO3	55002	broad.mit.edu	37	chr13	114157899	114157899	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttctccagaaaagctaaGaaaggtaaggacctcatcaa	7	8	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114157899	T	T	114157899	3	4	86	1	0	0	0	0	1	0	0	0	16120	942	33	3	1052	3	TMCO3	13	114157899	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	181078	114157899	1011979	673	90088											
GAS6	2621	broad.mit.edu	37	chr13	114542875	114542875	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgccccacccctgcgCgcccaacgcagctgagatcg	10	19	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114542875	T	T	114542875	1	4	86	0	1	0	0	0	0	0	0	0	6311	783	27	4		4	GAS6	13	114542875	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	384976	114542875	627003	674	90089											
TTC5	91875	broad.mit.edu	37	chr14	20767521	20767521	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgtcggacactgtccatGacatggtgagaatgttcatc	11	10	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20767521	A	A	20767521	2	1	86	1	0	0	0	0	0	0	0	1	16837	1277	45	4		4	TTC5	14	20767521	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08		20767521	86582019	675	90090											
PARP2	10038	broad.mit.edu	37	chr14	20813691	20813691	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catcctttgttataaggactCctgtctgggatgctgttagt	10	8	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20813691	G	G	20813691	1	3	86	0	1	0	0	0	0	0	0	0	11555	870	30	4		4	PARP2	14	20813691	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	46170	20813691	86535849	676	90091											
TEP1	7011	broad.mit.edu	37	chr14	20850472	20850472	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcaggatgtgctgcagcAgcagggggacagtggcaggc	18	9	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20850472	T	T	20850472	3	4	86	1	0	0	0	0	1	0	0	0	15881	188	7	5	3807	5	TEP1	14	20850472	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	36781	20850472	86499068	677	90092											
RNASE3	6037	broad.mit.edu	37	chr14	21359668	21359668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgacagggcagcacctgaGggagaggtgagctgaagtta	17	7	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21359668	T	T	21359668	1	4	86	0	1	0	0	0	0	0	0	0	13516	1015	35	2		2	RNASE3	14	21359668	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	509196	21359668	85989872	678	90093											
SLC7A8	23428	broad.mit.edu	37	chr14	23598916	23598916	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggactatctgtccagcaacCgtgaccccatagaagaggta	10	11	1	3	rs35143650		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23598916	A	A	23598916	2	1	86	1	0	0	0	0	0	0	0	1	14818	639	23	1		1	SLC7A8	14	23598916	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2239248	23598916	83750624	679	90094											
RIPK3	11035	broad.mit.edu	37	chr14	24805446	24805446	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaggatctttagggccttCttgcgaacctactggtgggg	13	9	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24805446	T	T	24805446	3	4	86	1	0	0	0	0	1	0	0	0	13493	922	32	4	68	4	RIPK3	14	24805446	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1206530	24805446	82544094	680	90095											
SRP54	6729	broad.mit.edu	37	chr14	35484041	35484041	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagttgaaacatggtatAtgagtgacaaaaaagcactt	10	4	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35484041	G	G	35484041	1	3	86	0	1	0	0	0	0	0	0	0	15273	464	16	5		5	SRP54	14	35484041	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	10678595	35484041	71865499	681	90096											
RALGAPA1	253959	broad.mit.edu	37	chr14	36142052	36142052	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atataaactacttcttagatGatacatatatatatagttac	3	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36142052	A	A	36142052	1	1	86	0	1	0	0	0	0	0	0	0	13121	1305	45	4		4	RALGAPA1	14	36142052	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	658011	36142052	71207488	682	90097											
RPL10L	140801	broad.mit.edu	37	chr14	47120689	47120689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcactcgcatgtgaaagCcatctctgccacaacttttc	7	15	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47120689	A	A	47120689	3	1	86	1	0	0	0	0	1	0	0	0	13667	739	26	3	397	3	RPL10L	14	47120689	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	10978637	47120689	60228851	683	90098											
C14orf138	79609	broad.mit.edu	37	chr14	50582933	50582933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgaggtgtaggcacaggGgggaaagcctgtaatccgga	17	7	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50582933	A	A	50582933	1	1	86	0	1	0	0	0	0	0	0	0	1759	1247	43	4		4	C14orf138	14	50582933	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3462244	50582933	56766607	684	90099											
TMX1	81542	broad.mit.edu	37	chr14	51712139	51712139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtaatcagaagtagtaGgcctctggcttggatcatgc	12	7	3	1	rs5018274		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51712139	T	T	51712139	1	4	86	0	1	0	0	0	0	0	0	0	16389	1015	35	2		2	TMX1	14	51712139	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1129206	51712139	55637401	685	90100											
MNAT1	4331	broad.mit.edu	37	chr14	61263209	61263209	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaataactataaattcattTaagttcttagagaactgagt	5	4	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61263209	A	A	61263209	1	1	86	0	1	0	0	0	0	0	0	0	9768	1769	61	5		5	MNAT1	14	61263209	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	9551070	61263209	46086331	686	90101											
ZFYVE26	23503	broad.mit.edu	37	chr14	68255910	68255910	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagactgtatttatgccatCagattgtatgtgacaaaatt	7	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68255910	G	G	68255910	1	3	86	0	1	0	0	0	0	0	0	0	17794	841	29	4		4	ZFYVE26	14	68255910	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6992701	68255910	39093630	687	90102											
RGS6	9628	broad.mit.edu	37	chr14	72818969	72818969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttataagtctagattgcGgcctgaggggtgtctgaaga	15	5	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72818969	T	T	72818969	1	4	86	0	1	0	0	0	0	0	0	0	13418	1131	39	1		1	RGS6	14	72818969	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4563059	72818969	34530571	688	90103											
TTC8	123016	broad.mit.edu	37	chr14	89336658	89336658	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccatgtctttatgaaactCaaatgtcaacactgagatat	7	8	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89336658	G	G	89336658	1	3	86	0	1	0	0	0	0	0	0	0	16840	841	29	4		4	TTC8	14	89336658	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	16517689	89336658	18012882	689	90104											
GPR68	8111	broad.mit.edu	37	chr14	91700939	91700939	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcaggaagtagatgctGgtcagcagctccttggccca	12	11	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91700939	T	T	91700939	2	4	86	1	0	0	0	0	0	0	0	1	6772	1335	47	2		2	GPR68	14	91700939	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2364281	91700939	15648601	690	90105											
ASB2	51676	broad.mit.edu	37	chr14	94401096	94401096	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtatttcccaatggcctttCgaacccgcagtcggcaaagg	11	12	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94401096	T	T	94401096	3	4	86	1	0	0	0	0	1	0	0	0	1027	884	31	4	97	4	ASB2	14	94401096	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2700157	94401096	12948444	691	90106											
HHIPL1	84439	broad.mit.edu	37	chr14	100135225	100135225	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctccttccgtgtgcagctCattgacgtctcagccgttca	9	14	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100135225	G	G	100135225	1	3	86	0	1	0	0	0	0	0	0	0	7160	838	29	4		4	HHIPL1	14	100135225	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5734129	100135225	7214315	692	90107											
MARK3	4140	broad.mit.edu	37	chr14	103871486	103871486	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggagctcggtgtagaaactCtatagcctcctgtgcagatg	12	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103871486	G	G	103871486	3	3	86	1	0	0	0	0	1	0	0	0	9406	913	32	4	131	4	MARK3	14	103871486	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3736261	103871486	3478054	693	90108											
PPP1R13B	23368	broad.mit.edu	37	chr14	104205426	104205426	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctaagaacccacgcctgCtgggaaggagtggtgggagc	16	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104205426	T	T	104205426	1	4	86	0	1	0	0	0	0	0	0	0	12458	812	28	4		4	PPP1R13B	14	104205426	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	333940	104205426	3144114	694	90109											
CYFIP1	23191	broad.mit.edu	37	chr15	22928529	22928530	+	Intron	INS	-	G	G													ggtaaaatggcaaataatctINSggggggggtgtaacaccgag							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22928530	G	G	22928529	6	5	86	0	1	1	1	0	0	0	0	0	4170	1595	55	0		0	CYFIP1	15	22928529	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08		22928529	79602863	695	90110											
NDN	4692	broad.mit.edu	37	chr15	23931653	23931653	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaattcatttggacgaactCctcagtgatgagcttccgca	9	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23931653	A	A	23931653	4	1	86	1	0	0	0	0	0	1	0	0	10342	864	30	3	257	3	NDN	15	23931653	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1003124	23931653	78599739	696	90111											
GABRB3	2562	broad.mit.edu	37	chr15	27184268	27184268	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttttgaattgctcttcctCcacccctcaaagaacacttc	3	14	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27184268	G	G	27184268	1	3	86	0	1	0	0	0	0	0	0	0	6228	870	30	4		4	GABRB3	15	27184268	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3252615	27184268	75347124	697	90112											
HERC2	8924	broad.mit.edu	37	chr15	28366458	28366458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaagcatcacttctaaggCtgtcagacttggagagtaat	10	8	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28366458	A	A	28366458	1	1	86	0	1	0	0	0	0	0	0	0	7125	812	28	3		3	HERC2	15	28366458	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1182190	28366458	74164934	698	90113											
HERC2	8924	broad.mit.edu	37	chr15	28375358	28375358	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagccagtggcgatggcgatGactttcttcccctgcaaccc	11	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28375358	A	A	28375358	2	1	86	1	0	0	0	0	0	0	0	1	7125	1277	45	4		4	HERC2	15	28375358	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	8900	28375358	74156034	699	90114											
RYR3	6263	broad.mit.edu	37	chr15	33831598	33831598	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcttccaaacagaggtccGaaggagagaaagttcgaatt	11	8	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33831598	A	A	33831598	3	1	86	1	0	0	0	0	1	0	0	0	13881	1059	37	4	503	4	RYR3	15	33831598	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5456240	33831598	68699794	700	90115											
RYR3	6263	broad.mit.edu	37	chr15	33938730	33938730	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagctttccagaaaaggtGagggtgaggcctccagttct	13	8	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33938730	A	A	33938730	1	1	86	0	1	0	0	0	0	0	0	0	13881	1305	45	4		4	RYR3	15	33938730	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	107132	33938730	68592662	701	90116											
C15orf29	79768	broad.mit.edu	37	chr15	34455870	34455870	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttaacattgtgggtttctGatgccataatctcttaagta	7	6	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34455870	A	A	34455870	3	1	86	1	0	0	0	0	1	0	0	0	1802	1294	45	4	942	4	C15orf29	15	34455870	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	517140	34455870	68075522	702	90117											
AQR	9716	broad.mit.edu	37	chr15	35189673	35189673	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttttgtggagttttaaaaGaaacagaaaatttaaaaaca	7	2	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35189673	A	A	35189673	1	1	86	0	1	0	0	0	0	0	0	0	837	957	33	4		4	AQR	15	35189673	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	733803	35189673	67341719	703	90118											
TMEM87A	25963	broad.mit.edu	37	chr15	42509968	42509968	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttctatttagtcaccataTacataatttatgcacgtgaa	4	8	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42509968	C	C	42509968	1	2	86	0	1	0	0	0	0	0	0	0	16333	1421	49	5		5	TMEM87A	15	42509968	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	7320295	42509968	60021424	704	90119											
UBR1	197131	broad.mit.edu	37	chr15	43313527	43313527	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaactggggaattcctttGagtttttccaaaagcatttg	8	7	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43313527	C	C	43313527	2	2	86	1	0	0	0	0	0	0	0	1	17027	1277	45	4		4	UBR1	15	43313527	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	803559	43313527	59217865	705	90120											
DUOX1	53905	broad.mit.edu	37	chr15	45426448	45426448	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaccttagcaacaccatctCaaggggccctgcagggctgg	12	13	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45426448	G	G	45426448	4	3	86	1	0	0	0	0	0	1	0	0	4840	838	29	4	258	4	DUOX1	15	45426448	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2112921	45426448	57104944	706	90121											
MYEF2	50804	broad.mit.edu	37	chr15	48443287	48443287	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaataaattctagtaaaatTtaaacctacttattccagat	3	6	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48443287	A	A	48443287	1	1	86	0	1	0	0	0	0	0	0	0	10118	1856	64	5		5	MYEF2	15	48443287	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	3016839	48443287	54088105	707	90122											
SLC12A1	6557	broad.mit.edu	37	chr15	48500035	48500035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctgcagatgacaataCtgacccaccacattatgaag	8	11	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48500035	A	A	48500035	3	1	86	1	0	0	0	0	1	0	0	0	14495	565	20	3	121	3	SLC12A1	15	48500035	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	56748	48500035	54031357	708	90123											
SLC12A1	6557	broad.mit.edu	37	chr15	48500163	48500163	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggagaaactgctaaaacaGatgccagttttcacgcttat	9	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48500163	A	A	48500163	3	1	86	1	0	0	0	0	1	0	0	0	14495	942	33	4	249	4	SLC12A1	15	48500163	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	128	48500163	54031229	709	90124											
FBN1	2200	broad.mit.edu	37	chr15	48703113	48703113	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtacctatgatatgatgattCtgattgggggaaaatatagt	11	3	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48703113	A	A	48703113	1	1	86	0	1	0	0	0	0	0	0	0	5759	928	32	3		3	FBN1	15	48703113	3'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	202950	48703113	53828279	710	90125											
FBN1	2200	broad.mit.edu	37	chr15	48756110	48756110	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttacccatgcaattatttCccccattcacttgcatgtag	4	13	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48756110	T	T	48756110	3	4	86	1	0	0	0	0	1	0	0	0	5759	855	30	4	3668	4	FBN1	15	48756110	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	52997	48756110	53775282	711	90126											
MAPK6	5597	broad.mit.edu	37	chr15	52350895	52350895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgttgtacatgaggaagatCgtcaggagcttctcagcgta	12	8	2	2	rs1049605		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52350895	A	A	52350895	3	1	86	1	0	0	0	0	1	0	0	0	9373	884	31	3	776	3	MAPK6	15	52350895	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3594785	52350895	50180497	712	90127											
MYO5A	4644	broad.mit.edu	37	chr15	52611478	52611478	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atactggaggttcgctttctCaaccctgtgggcttcacccc	9	14	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52611478	T	T	52611478	2	4	86	1	0	0	0	0	0	0	0	1	10172	825	29	4		4	MYO5A	15	52611478	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	260583	52611478	49919914	713	90128											
UNC13C	440279	broad.mit.edu	37	chr15	54556378	54556378	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcataggagcagcagaaaAgagttctaaacatggtgccg	11	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54556378	T	T	54556378	3	4	86	1	0	0	0	0	1	0	0	0	17112	72	3	5	3487	5	UNC13C	15	54556378	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1944900	54556378	47975014	714	90129											
PRTG	283659	broad.mit.edu	37	chr15	55970089	55970089	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatggctgagcttgacatGgtttcagcatgtacattata	10	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55970089	T	T	55970089	2	4	86	1	0	0	0	0	0	0	0	1	12744	1335	47	2		2	PRTG	15	55970089	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1413711	55970089	46561303	715	90130											
FAM63B	54629	broad.mit.edu	37	chr15	59064338	59064338	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgtatcacatcaagtggatCcagtggaaggaagagaacac	12	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59064338	T	T	59064338	2	4	86	1	0	0	0	0	0	0	0	1	5648	845	30	4		4	FAM63B	15	59064338	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3094249	59064338	43467054	716	90131											
TLN2	83660	broad.mit.edu	37	chr15	63055813	63055813	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactccatcgatggcatcaaCcggtgcatccgggacatcga	10	13	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63055813	T	T	63055813	2	4	86	1	0	0	0	0	0	0	0	1	16071	506	18	4		4	TLN2	15	63055813	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3991475	63055813	39475579	717	90132											
SLC24A1	9187	broad.mit.edu	37	chr15	65944162	65944162	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacactttccttcaggatcAatctccggtactcagggaat	8	12	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65944162	T	T	65944162	1	4	86	0	1	0	0	0	0	0	0	0	14579	145	5	5		5	SLC24A1	15	65944162	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	2888349	65944162	36587230	718	90133											
DENND4A	10260	broad.mit.edu	37	chr15	66015139	66015139	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaggcaaagtaattggagtCcctttttcagattaaattac	7	6	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66015139	A	A	66015139	1	1	86	0	1	0	0	0	0	0	0	0	4473	870	30	3		3	DENND4A	15	66015139	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	70977	66015139	36516253	719	90134											
ISLR	3671	broad.mit.edu	37	chr15	74468360	74468360	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccggaggacaatgtggtcatCatctacctcagccgtgctgg	12	12	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74468360	G	G	74468360	3	3	86	1	0	0	0	0	1	0	0	0	7928	816	29	4	1163	4	ISLR	15	74468360	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8453221	74468360	28063032	720	90135											
SCAMP5	192683	broad.mit.edu	37	chr15	75310742	75310742	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcctgcccgcagccccacaCtggcctcttcctgcagcggc	9	20	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75310742	G	G	75310742	1	3	86	0	1	0	0	0	0	0	0	0	13986	580	20	4		4	SCAMP5	15	75310742	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	842382	75310742	27220650	721	90136											
MTHFS	10588	broad.mit.edu	37	chr15	80181807	80181808	+	Intron	INS	-	A	A													tttctttaaatattaaaaagINSaaaaaaaaagggggggggac							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80181808	A	A	80181807	6	5	86	0	1	1	1	0	0	0	0	0	10026	957	33	0		0	MTHFS	15	80181807	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	4871065	80181807	22349585	722	90137											
MESDC2	23184	broad.mit.edu	37	chr15	81271612	81271612	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcttccttggaagaccgaGatttcagatctccttccttc	6	12	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81271612	A	A	81271612	3	1	86	1	0	0	0	0	1	0	0	0	9574	942	33	4	55	4	MESDC2	15	81271612	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1089805	81271612	21259780	723	90138											
AKAP13	11214	broad.mit.edu	37	chr15	86118220	86118220	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattggttatatgcctgaatCatttgggaggtatatatact	9	4	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86118220	G	G	86118220	1	3	86	0	1	0	0	0	0	0	0	0	449	841	29	4		4	AKAP13	15	86118220	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4846608	86118220	16413172	724	90139											
ZNF774	342132	broad.mit.edu	37	chr15	90903722	90903722	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaaattcagcgacagctCaacactcatcaaacatcaga	6	11	5	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90903722	G	G	90903722	4	3	86	1	0	0	0	0	0	1	0	0	18276	838	29	4	669	4	ZNF774	15	90903722	Nonsense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	4785502	90903722	11627670	725	90140											
CHD2	1106	broad.mit.edu	37	chr15	93543719	93543719	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcttgatttgtattttaatCatcattttctctccttttcc	3	9	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93543719	G	G	93543719	1	3	86	0	1	0	0	0	0	0	0	0	3356	841	29	4		4	CHD2	15	93543719	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2639997	93543719	8987673	726	90141											
MCTP2	55784	broad.mit.edu	37	chr15	95022190	95022190	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatcacggctatttgttttCacaggtgcagtatgcagaat	10	8	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95022190	T	T	95022190	1	4	86	0	1	0	0	0	0	0	0	0	9494	841	29	4		4	MCTP2	15	95022190	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1478471	95022190	7509202	727	90142											
ADAMTS17	170691	broad.mit.edu	37	chr15	100591631	100591631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctgtccaagtattctgCagagagattttcggtgggat	12	7	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100591631	A	A	100591631	1	1	86	0	1	0	0	0	0	0	0	0	262	725	25	3		3	ADAMTS17	15	100591631	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5569441	100591631	1939761	728	90143											
ALDH1A3	220	broad.mit.edu	37	chr15	101432911	101432911	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcttttcattaatccagaGccccccctgactgtttccct	4	15	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101432911	A	A	101432911	1	1	86	0	1	0	0	0	0	0	0	0	492	986	34	4		4	ALDH1A3	15	101432911	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	841280	101432911	1098481	729	90144											
NLRC3	197358	broad.mit.edu	37	chr16	3606914	3606914	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagcaggtgacacacacctCagggaggtcagggtgcggtt	17	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3606914	T	T	3606914	2	4	86	1	0	0	0	0	0	0	0	1	10563	813	29	4		4	NLRC3	16	3606914	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08		3606914	86747839	730	90145											
CREBBP	1387	broad.mit.edu	37	chr16	3781081	3781081	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcctagttctggaggagtCagtgcagccaccatcaggta	12	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3781081	G	G	3781081	1	3	86	0	1	0	0	0	0	0	0	0	3893	841	29	4		4	CREBBP	16	3781081	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	174167	3781081	86573672	731	90146											
GLYR1	84656	broad.mit.edu	37	chr16	4862032	4862032	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgacgctgtcatcagtgtGaaacagaggagatgtggccc	13	9	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4862032	A	A	4862032	1	1	86	0	1	0	0	0	0	0	0	0	6547	1305	45	4		4	GLYR1	16	4862032	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1080951	4862032	85492721	732	90147											
RSL1D1	26156	broad.mit.edu	37	chr16	11931800	11931800	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcgaaggacttttttccttCactgcctcttctttgatttt	6	10	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11931800	A	A	11931800	2	1	86	1	0	0	0	0	0	0	0	1	13811	813	29	3		3	RSL1D1	16	11931800	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	7069768	11931800	78422953	733	90148											
GPR139	124274	broad.mit.edu	37	chr16	20043222	20043222	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgaagaaagccttgagCgtggcggctgccatggtgcg	15	10	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20043222	A	A	20043222	2	1	86	1	0	0	0	0	0	0	0	1	6713	755	27	3		3	GPR139	16	20043222	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8111422	20043222	70311531	734	90149											
ERI2	112479	broad.mit.edu	37	chr16	20791949	20791949	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attcatgacatgaagaggttCaagtggagagcttctcaaaa	10	6	3	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20791949	G	G	20791949	1	3	86	0	1	0	0	0	0	0	0	0	5270	841	29	4		4	ERI2	16	20791949	3'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	748727	20791949	69562804	735	90150											
ZP2	7783	broad.mit.edu	37	chr16	21214640	21214640	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaccgtcacagggaggcagGaagcaagtccactaaatact	11	10	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21214640	C	C	21214640	1	2	86	0	1	0	0	0	0	0	0	0	18345	1189	41	4		4	ZP2	16	21214640	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	422691	21214640	69140113	736	90151											
UQCRC2	7385	broad.mit.edu	37	chr16	21968624	21968624	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaggagcaccgccacaAcctcaggaccttgaggttag	11	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21968624	T	T	21968624	3	4	86	1	0	0	0	0	1	0	0	0	17146	40	2	5	108	5	UQCRC2	16	21968624	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	753984	21968624	68386129	737	90152											
COG7	91949	broad.mit.edu	37	chr16	23456276	23456276	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtttctgaatgctgctAttggctatcaactttgtatc	9	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23456276	T	T	23456276	1	4	86	0	1	0	0	0	0	0	0	0	3695	464	16	5		5	COG7	16	23456276	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1487652	23456276	66898477	738	90153											
ERN2	10595	broad.mit.edu	37	chr16	23713313	23713314	+	Intron	INS	-	AAA	AAA													acaacaacaacaacaacaacINSaagttgtgttgttcccaaca					rs147321051	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAA	23713314	AAA	AAA	23713313	6	5	86	0	1	1	1	0	0	0	0	0	5280	493	17	0		0	ERN2	16	23713313	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	257037	23713313	66641440	739	90154											
CACNG3	10368	broad.mit.edu	37	chr16	24373255	24373256	+	3'UTR	DNP	GC	CA	CA													acagagatgtctctgaggttGcatggcatggtccttgtgat							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	24373256	CA	CA	24373255	1	2	86	0	1	0	0	0	0	0	0	0	2584	1334	46	4		4	CACNG3	16	24373255	3'UTR	DNP	GC	TCGA-17-Z057-01A-01W-0747-08	659942	24373255	65981498	740	90155											
RBBP6	5930	broad.mit.edu	37	chr16	24580361	24580362	+	Frame_Shift_Del	DEL	CG	-	-													ggggacagtctcctaataaaCgtaatgtacctcaaggggaa					rs146591085	byFrequency	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24580362	-	-	24580361	7	5	86	1	0	1	0	1	0	0	0	0	13211	536	19	0	2470	0	RBBP6	16	24580361	Frame_Shift_Del	DEL	CG	TCGA-17-Z057-01A-01W-0747-08	207106	24580361	65774392	741	90156											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25255481	25255481	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccgcactctcgaagctgttCagctacagccccatacaatt	7	15	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25255481	T	T	25255481	3	4	86	1	0	0	0	0	1	0	0	0	17813	835	29	4	1305	4	ZKSCAN2	16	25255481	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	675120	25255481	65099272	742	90157											
SRCAP	10847	broad.mit.edu	37	chr16	30749653	30749655	+	In_Frame_Del	DEL	GCG	-	-													gtagaggaaaaggaactggtGcggcggcggcggcagcagcg							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30749655	-	-	30749653	7	5	86	1	0	1	0	1	0	0	0	0	15253	1306	46	0	8418	0	SRCAP	16	30749653	In_Frame_Del	DEL	GCG	TCGA-17-Z057-01A-01W-0747-08	5494172	30749653	59605100	743	90158											
MYST1	84148	broad.mit.edu	37	chr16	31138310	31138310	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacgggagggacagcctgGtcaccacttctgttcacctc	11	14	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31138310	A	A	31138310	1	1	86	0	1	0	0	0	0	0	0	0	10196	1276	44	4		4	MYST1	16	31138310	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	388657	31138310	59216443	744	90159											
ORC6L	23594	broad.mit.edu	37	chr16	46729493	46729493	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggattctaaagctgaaagtgGataaaaacaaaatggtagcc	10	5	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46729493	C	C	46729493	3	2	86	1	0	0	0	0	1	0	0	0	11360	1174	41	4	487	4	ORC6L	16	46729493	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	15591183	46729493	43625260	745	90160											
GPT2	84706	broad.mit.edu	37	chr16	46956129	46956129	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctttctataactggtggtCctctccctctctttggccct	7	14	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46956129	A	A	46956129	1	1	86	0	1	0	0	0	0	0	0	0	6804	870	30	3		3	GPT2	16	46956129	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	226636	46956129	43398624	746	90161											
PHKB	5257	broad.mit.edu	37	chr16	47682267	47682267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgctctcaaatctctcaGtaatccaaaatctaagttga	4	9	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47682267	T	T	47682267	1	4	86	0	1	0	0	0	0	0	0	0	11940	1044	36	3		3	PHKB	16	47682267	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	726138	47682267	42672486	747	90162											
PHKB	5257	broad.mit.edu	37	chr16	47695785	47695785	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatatcaaatatgcataagCtatccactaaaatgttacaa	3	7	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47695785	T	T	47695785	1	4	86	0	1	0	0	0	0	0	0	0	11940	812	28	4		4	PHKB	16	47695785	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	13518	47695785	42658968	748	90163											
BRD7	29117	broad.mit.edu	37	chr16	50362548	50362548	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttctctgccaaatagcatCaagttcatgcacagttttac	6	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50362548	T	T	50362548	1	4	86	0	1	0	0	0	0	0	0	0	1514	841	29	4		4	BRD7	16	50362548	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2666763	50362548	39992205	749	90164											
NOD2	64127	broad.mit.edu	37	chr16	50745444	50745444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggacccagtcttcttcGgggccgcctccccaccctcc	9	20	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50745444	T	T	50745444	3	4	86	1	0	0	0	0	1	0	0	0	10612	1116	39	1	1636	1	NOD2	16	50745444	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	382896	50745444	39609309	750	90165											
CIAPIN1	57019	broad.mit.edu	37	chr16	57465060	57465060	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctccagtcaccccagcactCaccagttcttacaggccttc	6	18	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57465060	T	T	57465060	1	4	86	0	1	0	0	0	0	0	0	0	3450	841	29	4		4	CIAPIN1	16	57465060	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6719616	57465060	32889693	751	90166											
SLC38A7	55238	broad.mit.edu	37	chr16	58710108	58710109	+	Intron	DNP	CC	TG	TG													ccaggatttcctccattctgCctgggttcctcctccttgct							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	58710109	TG	TG	58710108	1	4	86	0	1	0	0	0	0	0	0	0	14723	754	26	4		4	SLC38A7	16	58710108	Intron	DNP	CC	TCGA-17-Z057-01A-01W-0747-08	1245048	58710108	31644645	752	90167											
CDH11	1009	broad.mit.edu	37	chr16	65032487	65032487	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattggacctctcaggcacGttggcatgataggtctcgtg	12	10	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65032487	T	T	65032487	3	4	86	1	0	0	0	0	1	0	0	0	3127	1136	40	3	1929	3	CDH11	16	65032487	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6322379	65032487	25322266	753	90168											
PRMT7	54496	broad.mit.edu	37	chr16	68379639	68379639	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggagcctgtggtgcaggGctcagcgctctatctggtag	16	9	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68379639	C	C	68379639	3	2	86	1	0	0	0	0	1	0	0	0	12647	1203	42	4	1019	4	PRMT7	16	68379639	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3347152	68379639	21975114	754	90169											
HYDIN	54768	broad.mit.edu	37	chr16	71025871	71025871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttattaaactgttgactggGtactggatgaatgaaccaat	9	5	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71025871	A	A	71025871	1	1	86	0	1	0	0	0	0	0	0	0	7537	1276	44	4		4	HYDIN	16	71025871	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2646232	71025871	19328882	755	90170											
PMFBP1	83449	broad.mit.edu	37	chr16	72164000	72164000	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggctcaagtgatctgccTgccttggcctcgcaaagagc	12	13	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72164000	C	C	72164000	1	2	86	0	1	0	0	0	0	0	0	0	12229	1595	55	5		5	PMFBP1	16	72164000	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	1138129	72164000	18190753	756	90171											
PMFBP1	83449	broad.mit.edu	37	chr16	72174463	72174463	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatccgtacctttgaatgatCacccttgttctcaggctcct	6	13	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72174463	T	T	72174463	3	4	86	1	0	0	0	0	1	0	0	0	12229	826	29	4	2492	4	PMFBP1	16	72174463	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	10463	72174463	18180290	757	90172											
RFWD3	55159	broad.mit.edu	37	chr16	74658016	74658016	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaggagtcagtcagtacacGaagggacttccattcttcat	9	10	5	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74658016	A	A	74658016	1	1	86	0	1	0	0	0	0	0	0	0	13369	1073	37	4		4	RFWD3	16	74658016	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2483553	74658016	15696737	758	90173											
FANCA	2175	broad.mit.edu	37	chr16	89858345	89858345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagctcaccttcaagcagCtgctgcgcttctggaaagca	9	12	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89858345	A	A	89858345	3	1	86	1	0	0	0	0	1	0	0	0	5719	796	28	3	3276	3	FANCA	16	89858345	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	15200329	89858345	496408	759	90174											
TSR1	55720	broad.mit.edu	37	chr17	2234038	2234038	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaagccaaccctcatccTtcaagatgcttcatttaccc	3	14	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2234038	G	G	2234038	1	3	86	0	1	0	0	0	0	0	0	0	16789	1624	56	5		5	TSR1	17	2234038	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08		2234038	78961172	760	90175											
ZZEF1	23140	broad.mit.edu	37	chr17	3961243	3961243	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccactatgttccttgcgtttCataacctacattaggaactg	6	11	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3961243	T	T	3961243	1	4	86	0	1	0	0	0	0	0	0	0	18384	841	29	4		4	ZZEF1	17	3961243	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1727205	3961243	77233967	761	90176											
KIF1C	10749	broad.mit.edu	37	chr17	4926854	4926854	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcagcccccagtgaccGcatgccgtcagcccggcccc	13	19	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4926854	A	A	4926854	3	1	86	1	0	0	0	0	1	0	0	0	8355	1087	38	4	2802	4	KIF1C	17	4926854	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	965611	4926854	76268356	762	90177											
TP53	7157	broad.mit.edu	37	chr17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgtagatggccatggCgcggacgcgggtgccgggcg	19	11	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7578455	G	G	7578455	3	3	86	1	0	0	0	0	1	0	0	0	16505	768	27	4	823	4	TP53	17	7578455	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2651601	7578455	73616755	763	90178											
WDR16	146845	broad.mit.edu	37	chr17	9503275	9503275	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccatgttggtcagtctggtCttgaactcctgacctcaggt	10	11	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9503275	G	G	9503275	1	3	86	0	1	0	0	0	0	0	0	0	17403	928	32	4		4	WDR16	17	9503275	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1924820	9503275	71691935	764	90179											
MYH8	4626	broad.mit.edu	37	chr17	10303934	10303934	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgaaactcagcctcccGcttcttgttcaattccacct	4	15	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10303934	A	A	10303934	3	1	86	1	0	0	0	0	1	0	0	0	10135	1086	38	4	2361	4	MYH8	17	10303934	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	800659	10303934	70891276	765	90180											
MYH4	4622	broad.mit.edu	37	chr17	10362640	10362640	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccactcgatgccttccttCttgtactcttcctgctccag	5	17	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10362640	T	T	10362640	2	4	86	1	0	0	0	0	0	0	0	1	10131	912	32	4		4	MYH4	17	10362640	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	58706	10362640	70832570	766	90181											
MYH1	4619	broad.mit.edu	37	chr17	10408060	10408060	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttggtagaatctagatcTctccttagtgaccactgagc	8	9	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10408060	A	A	10408060	1	1	86	0	1	0	0	0	0	0	0	0	10123	1566	54	5		5	MYH1	17	10408060	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	45420	10408060	70787150	767	90182											
DNAH9	1770	broad.mit.edu	37	chr17	11671874	11671874	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactattacatcgacccagaGaccaagaaattcgagccttg	8	11	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11671874	C	C	11671874	3	2	86	1	0	0	0	0	1	0	0	0	4648	933	33	4	7421	4	DNAH9	17	11671874	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1263814	11671874	69523336	768	90183											
ZNF18	7566	broad.mit.edu	37	chr17	11895735	11895735	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagccctgtgtttcactcGcagatcataataccctctgc	8	13	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11895735	C	C	11895735	1	2	86	0	1	0	0	0	0	0	0	0	17873	1102	38	4		4	ZNF18	17	11895735	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	223861	11895735	69299475	769	90184											
ELAC2	60528	broad.mit.edu	37	chr17	12905673	12905673	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacactgagggtggggccctCcttctgaaagagacaaaaca	11	11	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12905673	T	T	12905673	3	4	86	1	0	0	0	0	1	0	0	0	5089	869	30	4	1302	4	ELAC2	17	12905673	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1009938	12905673	68289537	770	90185											
TBC1D26	353149	broad.mit.edu	37	chr17	15643250	15643250	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaggaatgtggattttactGaaaaaaaattcctaaaaact	6	5	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15643250	A	A	15643250	1	1	86	0	1	0	0	0	0	0	0	0	15735	1305	45	4		4	TBC1D26	17	15643250	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2737577	15643250	65551960	771	90186											
TRPV2	51393	broad.mit.edu	37	chr17	16336868	16336868	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtcccaggacgttctgtctGatgcatcctttgtccccaga	10	13	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16336868	C	C	16336868	1	2	86	0	1	0	0	0	0	0	0	0	16721	1305	45	4		4	TRPV2	17	16336868	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	693618	16336868	64858342	772	90187											
SHMT1	6470	broad.mit.edu	37	chr17	18256838	18256838	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcacatgctgggaataaaaGagttctgtcagagagcaggc	12	7	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18256838	C	C	18256838	1	2	86	0	1	0	0	0	0	0	0	0	14398	957	33	4		4	SHMT1	17	18256838	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1919970	18256838	62938372	773	90188											
KIAA0100	9703	broad.mit.edu	37	chr17	26942342	26942342	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaaaatgaaccaagacaaTaaagatttattaaacacatc	3	7	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26942342	C	C	26942342	1	2	86	0	1	0	0	0	0	0	0	0	8224	1421	49	5		5	KIAA0100	17	26942342	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	8685504	26942342	54252868	774	90189											
KIAA0100	9703	broad.mit.edu	37	chr17	26955622	26955622	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtagcatggaaattgcccCcagtgccacagaggcagtga	14	10	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26955622	T	T	26955622	1	4	86	0	1	0	0	0	0	0	0	0	8224	638	22	4		4	KIAA0100	17	26955622	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	13280	26955622	54239588	775	90190											
TAOK1	57551	broad.mit.edu	37	chr17	27802714	27802714	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggatattattaaggaagtCaagtttctacaaagaataaa	7	4	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27802714	A	A	27802714	2	1	86	1	0	0	0	0	0	0	0	1	15666	813	29	3		3	TAOK1	17	27802714	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	847092	27802714	53392496	776	90191											
EFCAB5	374786	broad.mit.edu	37	chr17	28419823	28419823	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtatttctgcttcctggtGatcccataaattttctcttg	6	10	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28419823	A	A	28419823	1	1	86	0	1	0	0	0	0	0	0	0	4978	1305	45	4		4	EFCAB5	17	28419823	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	617109	28419823	52775387	777	90192											
ZNF207	7756	broad.mit.edu	37	chr17	30689982	30689982	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggaccaggaataccacctCtgatgcctggaatgccacca	9	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30689982	G	G	30689982	3	3	86	1	0	0	0	0	1	0	0	0	17891	912	32	4	675	4	ZNF207	17	30689982	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2270159	30689982	50505228	778	90193											
TMEM98	26022	broad.mit.edu	37	chr17	31267870	31267870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatgcctgccatctgacGggaggcctggactggattga	15	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31267870	T	T	31267870	2	4	86	1	0	0	0	0	0	0	0	1	16348	1103	39	1		1	TMEM98	17	31267870	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	577888	31267870	49927340	779	90194											
ACCN1	40	broad.mit.edu	37	chr17	31355551	31355551	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacatctggctccaatactAgttttcttaccttactttaa	3	11	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31355551	G	G	31355551	1	3	86	0	1	0	0	0	0	0	0	0	128	435	15	5		5	ACCN1	17	31355551	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	87681	31355551	49839659	780	90195											
CCL7	6354	broad.mit.edu	37	chr17	32598107	32598107	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccattccctgttttacaAacagaaagacccaggacaca	5	12	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32598107	G	G	32598107	1	3	86	0	1	0	0	0	0	0	0	0	2936	29	1	5		5	CCL7	17	32598107	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	1242556	32598107	48597103	781	90196											
CCL13	6357	broad.mit.edu	37	chr17	32685069	32685069	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaccaaactgggcaaggaGatctgtgctgacccaaagga	12	9	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32685069	T	T	32685069	3	4	86	1	0	0	0	0	1	0	0	0	2912	933	33	3	226	3	CCL13	17	32685069	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	86962	32685069	48510141	782	90197											
ACACA	31	broad.mit.edu	37	chr17	35537982	35537982	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaccatccaatatctgagTtggcagtcaccaatcctcaa	6	12	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35537982	C	C	35537982	1	2	86	0	1	0	0	0	0	0	0	0	106	1740	60	5		5	ACACA	17	35537982	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	2852913	35537982	45657228	783	90198											
MLLT6	4302	broad.mit.edu	37	chr17	36863738	36863738	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgcactcttgcattggcaGaggtgtgagctgtgcccaca	13	10	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36863738	A	A	36863738	5	1	86	1	0	0	0	0	0	0	1	0	9723	956	33	4	199	4	MLLT6	17	36863738	Splice_Site	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1325756	36863738	44331472	784	90199											
PCGF2	7703	broad.mit.edu	37	chr17	36896596	36896596	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgatgaagtaccccccgcaGagggcacacatgaggtgggg	15	11	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36896596	C	C	36896596	2	2	86	1	0	0	0	0	0	0	0	1	11669	929	33	4		4	PCGF2	17	36896596	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	32858	36896596	44298614	785	90200											
STARD3	10948	broad.mit.edu	37	chr17	37809961	37809961	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctgtctcttcgtcaccttCgacctgctcttcatctccct	4	17	6	0	rs150342077	byFrequency	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37809961	T	T	37809961	2	4	86	1	0	0	0	0	0	0	0	1	15375	883	31	4		4	STARD3	17	37809961	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	913365	37809961	43385249	786	90201											
MSL1	339287	broad.mit.edu	37	chr17	38285736	38285736	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaagggacccagcacccatCccaaggagaaagccttctca	8	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38285736	T	T	38285736	3	4	86	1	0	0	0	0	1	0	0	0	9971	855	30	4	448	4	MSL1	17	38285736	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	475775	38285736	42909474	787	90202											
ITGA2B	3674	broad.mit.edu	37	chr17	42463098	42463098	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcaggcctggagaaaggccAcaggagtggggacgggcgcg	20	10	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42463098	G	G	42463098	1	3	86	0	1	0	0	0	0	0	0	0	7946	174	6	5		5	ITGA2B	17	42463098	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	4177362	42463098	38732112	788	90203											
ARHGAP27	201176	broad.mit.edu	37	chr17	43473060	43473060	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcggggaggcgctggggGcttcagccgggacctgcctc	18	13	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43473060	A	A	43473060	1	1	86	0	1	0	0	0	0	0	0	0	878	1218	42	4		4	ARHGAP27	17	43473060	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1009962	43473060	37722150	789	90204											
ARHGAP27	201176	broad.mit.edu	37	chr17	43481113	43481113	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgggggtggcaggacttaGatttggtcctgggctgaggg	20	5	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43481113	T	T	43481113	1	4	86	0	1	0	0	0	0	0	0	0	878	957	33	3		3	ARHGAP27	17	43481113	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	8053	43481113	37714097	790	90205											
ARHGAP27	201176	broad.mit.edu	37	chr17	43483098	43483098	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcatctccaactcctcctCgggctcgttctcggcctcgt	8	18	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43483098	T	T	43483098	1	4	86	0	1	0	0	0	0	0	0	0	878	899	31	4		4	ARHGAP27	17	43483098	5'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1985	43483098	37712112	791	90206											
MAPT	4137	broad.mit.edu	37	chr17	44060805	44060805	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagggggcaaagagaggcCggggagcaaggaggaggtgg	24	5	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44060805	T	T	44060805	3	4	86	1	0	0	0	0	1	0	0	0	9389	652	23	4	653	4	MAPT	17	44060805	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	577707	44060805	37134405	792	90207											
SNX11	29916	broad.mit.edu	37	chr17	46189574	46189574	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttggtggttctgatgagctCagaataaagtcaggagaaag	13	4	3	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46189574	G	G	46189574	1	3	86	0	1	0	0	0	0	0	0	0	14996	841	29	4		4	SNX11	17	46189574	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2128769	46189574	35005636	793	90208											
FAM117A	81558	broad.mit.edu	37	chr17	47788932	47788932	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagacctggaggatgaagaGagacacacaagacacatacg	13	8	0	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47788932	A	A	47788932	1	1	86	0	1	0	0	0	0	0	0	0	5455	957	33	4		4	FAM117A	17	47788932	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1599358	47788932	33406278	794	90209											
KIF2B	84643	broad.mit.edu	37	chr17	51901579	51901579	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggagaaagaggtgtgTtgtgtggaggaagtgctgaa	18	3	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51901579	C	C	51901579	2	2	86	1	0	0	0	0	0	0	0	1	8368	1731	60	5		5	KIF2B	17	51901579	Silent	SNP	T	TCGA-17-Z057-01A-01W-0747-08	4112647	51901579	29293631	795	90210											
TOM1L1	10040	broad.mit.edu	37	chr17	52981101	52981101	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctggagttcagactgaaGattggggccagttcatgcac	13	8	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52981101	C	C	52981101	3	2	86	1	0	0	0	0	1	0	0	0	16475	942	33	4	97	4	TOM1L1	17	52981101	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1079522	52981101	28214109	796	90211											
STXBP4	252983	broad.mit.edu	37	chr17	53150576	53150576	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaatgataggatgctgtgtCctgatggggataatgtaaag	13	4	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53150576	T	T	53150576	1	4	86	0	1	0	0	0	0	0	0	0	15473	870	30	4		4	STXBP4	17	53150576	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	169475	53150576	28044634	797	90212											
CUEDC1	404093	broad.mit.edu	37	chr17	55950998	55950998	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcggagaaagtcatccGgaaggttgcccagcagtggt	16	8	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55950998	A	A	55950998	3	1	86	1	0	0	0	0	1	0	0	0	4085	1116	39	4	643	4	CUEDC1	17	55950998	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2800422	55950998	25244212	798	90213											
METTL2A	339175	broad.mit.edu	37	chr17	60504013	60504013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagccacctaccgaatactgGaggtaaccttttattgtctt	7	11	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60504013	C	C	60504013	3	2	86	1	0	0	0	0	1	0	0	0	9592	1175	41	4	566	4	METTL2A	17	60504013	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4553015	60504013	20691197	799	90214											
CSH2	1443	broad.mit.edu	37	chr17	61950941	61950941	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaggacacgttgtgccCaaagggattttaggggcgct	13	11	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61950941	T	T	61950941	1	4	86	0	1	0	0	0	0	0	0	0	3975	609	21	4		4	CSH2	17	61950941	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1446928	61950941	19244269	800	90215											
GH1	2688	broad.mit.edu	37	chr17	61996054	61996054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacctgagggttagtgccCccgtcccatctacaggtcgc	10	15	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61996054	A	A	61996054	1	1	86	0	1	0	0	0	0	0	0	0	6431	638	22	2		2	GH1	17	61996054	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	45113	61996054	19199156	801	90216											
BPTF	2186	broad.mit.edu	37	chr17	65822348	65822348	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggatgagatggaagaggacGacgatgactccgattatccg	14	7	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65822348	A	A	65822348	3	1	86	1	0	0	0	0	1	0	0	0	1504	1058	37	4	510	4	BPTF	17	65822348	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3826294	65822348	15372862	802	90217											
BPTF	2186	broad.mit.edu	37	chr17	65928065	65928065	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attcgccctggtatgaccgtGattagaacaccactccaaca	7	13	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65928065	C	C	65928065	2	2	86	1	0	0	0	0	0	0	0	1	1504	1277	45	4		4	BPTF	17	65928065	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	105717	65928065	15267145	803	90218											
WIPI1	55062	broad.mit.edu	37	chr17	66431604	66431604	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcatgaatataccacaCatgcagaggccagaaattct	7	9	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66431604	T	T	66431604	1	4	86	0	1	0	0	0	0	0	0	0	17497	493	17	4		4	WIPI1	17	66431604	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	503539	66431604	14763606	804	90219											
ABCA6	23460	broad.mit.edu	37	chr17	67111736	67111736	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttagtttagtggcatatttCtcagcatttcaatactttaa	5	6	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67111736	T	T	67111736	1	4	86	0	1	0	0	0	0	0	0	0	36	928	32	4		4	ABCA6	17	67111736	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	680132	67111736	14083474	805	90220											
ABCA10	10349	broad.mit.edu	37	chr17	67149586	67149589	+	Intron	DEL	AGGG	-	-													gcacccagccatgggtgcacAgggaaaccccgagcctggcc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67149589	-	-	67149586	6	5	86	0	1	1	0	1	0	0	0	0	29	203	7	0		0	ABCA10	17	67149586	Intron	DEL	AGGG	TCGA-17-Z057-01A-01W-0747-08	37850	67149586	14045624	806	90221											
CD300LB	124599	broad.mit.edu	37	chr17	72521761	72521762	+	Intron	DEL	TC	-	-													tctgcctgtctgtctgtctgTctctctctctctctctctta							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72521762	-	-	72521761	6	5	86	0	1	1	0	1	0	0	0	0	3029	1682	58	0		0	CD300LB	17	72521761	Intron	DEL	TC	TCGA-17-Z057-01A-01W-0747-08	5372175	72521761	8673449	807	90222											
CD300LB	124599	broad.mit.edu	37	chr17	72521802	72521802	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctcaccatcattccctttCagccttggaggggagcaggt	12	12	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72521802	T	T	72521802	1	4	86	0	1	0	0	0	0	0	0	0	3029	841	29	4		4	CD300LB	17	72521802	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	41	72521802	8673408	808	90223											
CD300C	10871	broad.mit.edu	37	chr17	72539161	72539161	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtcaaccttgatgacatCacatgggtctcccacttact	7	13	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72539161	T	T	72539161	1	4	86	0	1	0	0	0	0	0	0	0	3027	841	29	4		4	CD300C	17	72539161	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	17359	72539161	8656049	809	90224											
NUP85	79902	broad.mit.edu	37	chr17	73229201	73229201	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttttctgatttggatctCattgacaacctggggccagc	10	10	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73229201	T	T	73229201	2	4	86	1	0	0	0	0	0	0	0	1	10865	813	29	4		4	NUP85	17	73229201	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	690040	73229201	7966009	810	90225											
KIAA0195	9772	broad.mit.edu	37	chr17	73481551	73481551	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtccacgcggaaggccCtcagcgtcctgaaggagcag	14	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73481551	G	G	73481551	3	3	86	1	0	0	0	0	1	0	0	0	8230	681	24	4	73	4	KIAA0195	17	73481551	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	252350	73481551	7713659	811	90226											
PRPSAP1	5635	broad.mit.edu	37	chr17	74308953	74308953	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttagaagcagcctgacctCgtctacggaggactcctcaa	9	12	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74308953	T	T	74308953	3	4	86	1	0	0	0	0	1	0	0	0	12687	893	31	4	168	4	PRPSAP1	17	74308953	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	827402	74308953	6886257	812	90227											
P4HB	5034	broad.mit.edu	37	chr17	79804359	79804359	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtgatcctctctgccgtCagctcctccgattcgggctt	9	15	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79804359	T	T	79804359	2	4	86	1	0	0	0	0	0	0	0	1	11453	813	29	4		4	P4HB	17	79804359	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5495406	79804359	1390851	813	90228											
LAMA1	284217	broad.mit.edu	37	chr18	7023210	7023210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatagaacccgtcagcaCacctttcacagtgggcgcca	8	17	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7023210	A	A	7023210	3	1	86	1	0	0	0	0	1	0	0	0	8677	478	17	3	6753	3	LAMA1	18	7023210	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08		7023210	71054038	814	90229											
LAMA1	284217	broad.mit.edu	37	chr18	7044832	7044832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatgctcacattgacactGcagtttctacacaataagga	6	9	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7044832	T	T	7044832	3	4	86	1	0	0	0	0	1	0	0	0	8677	1328	46	3	8590	3	LAMA1	18	7044832	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	21622	7044832	71032416	815	90230											
LAMA1	284217	broad.mit.edu	37	chr18	7050560	7050560	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattacttataatagacatGactcaaggccactttaaata	4	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7050560	C	C	7050560	1	2	86	0	1	0	0	0	0	0	0	0	8677	1305	45	4		4	LAMA1	18	7050560	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5728	7050560	71026688	816	90231											
CEP192	55125	broad.mit.edu	37	chr18	13099677	13099677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttaatttcagaaatcaaAtgaaagcgtacttgaccctt	5	9	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13099677	G	G	13099677	1	3	86	0	1	0	0	0	0	0	0	0	3281	116	4	5		5	CEP192	18	13099677	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	6049117	13099677	64977571	817	90232											
C18orf1	753	broad.mit.edu	37	chr18	13645123	13645123	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctctcctcttttccttcCagatcatgcatgccccgcgg	7	17	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645123	T	T	13645123	1	4	86	0	1	0	0	0	0	0	0	0	1912	609	21	4		4	C18orf1	18	13645123	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	545446	13645123	64432125	818	90233											
POTEC	388468	broad.mit.edu	37	chr18	14523524	14523524	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctgcagatgcaaaaataGaaggttaatttgcttgttgt	9	4	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14523524	C	C	14523524	1	2	86	0	1	0	0	0	0	0	0	0	12358	957	33	4		4	POTEC	18	14523524	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	878401	14523524	63553724	819	90234											
CDH2	1000	broad.mit.edu	37	chr18	25568654	25568654	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaatgaaagtgaagtttaAtttctttttatgaaacttta	5	3	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25568654	G	G	25568654	1	3	86	0	1	0	0	0	0	0	0	0	3135	116	4	5		5	CDH2	18	25568654	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	11045130	25568654	52508594	820	90235											
B4GALT6	9331	broad.mit.edu	37	chr18	29205841	29205841	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaatgccctttacaatttCtggttcttgtgcataattta	5	8	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29205841	T	T	29205841	1	4	86	0	1	0	0	0	0	0	0	0	1280	928	32	4		4	B4GALT6	18	29205841	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3637187	29205841	48871407	821	90236											
C18orf34	374864	broad.mit.edu	37	chr18	30926045	30926045	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagtgatccgcatccccagCctcccaaagcgtgggattac	9	15	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30926045	G	G	30926045	1	3	86	0	1	0	0	0	0	0	0	0	1920	754	26	4		4	C18orf34	18	30926045	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1720204	30926045	47151203	822	90237											
C18orf21	83608	broad.mit.edu	37	chr18	33557477	33557477	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccactcctacaagtaaactCagcctgaagacaccagagag	8	13	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33557477	G	G	33557477	2	3	86	1	0	0	0	0	0	0	0	1	1915	813	29	4		4	C18orf21	18	33557477	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2631432	33557477	44519771	823	90238											
SIGLEC15	284266	broad.mit.edu	37	chr18	43418689	43418689	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcccctgcagccgcgcCgcggatcgtcaacatctcgg	10	18	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43418689	T	T	43418689	3	4	86	1	0	0	0	0	1	0	0	0	14423	652	23	4	517	4	SIGLEC15	18	43418689	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	9861212	43418689	34658559	824	90239											
ME2	4200	broad.mit.edu	37	chr18	48466751	48466752	+	Frame_Shift_Ins	INS	-	T	T													agtttctattaacattgctaINSttaaagtaagtaataactta							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48466752	T	T	48466751	7	5	86	1	0	1	1	0	0	0	0	0	9511	449	16	0	1636	0	ME2	18	48466751	Frame_Shift_Ins	INS	-	TCGA-17-Z057-01A-01W-0747-08	5048062	48466751	29610497	825	90240											
DCC	1630	broad.mit.edu	37	chr18	50451589	50451589	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttaatttactctgcaccttCcctatgtcttgcaggtctaa	6	11	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50451589	T	T	50451589	1	4	86	0	1	0	0	0	0	0	0	0	4315	870	30	4		4	DCC	18	50451589	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1984838	50451589	27625659	826	90241											
CCDC102B	79839	broad.mit.edu	37	chr18	66678271	66678271	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccgagtggatcaaaatgAagcagaagtaaagaaactaa	9	6	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66678271	G	G	66678271	3	3	86	1	0	0	0	0	1	0	0	0	2763	246	9	5	1386	5	CCDC102B	18	66678271	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	16226682	66678271	11398977	827	90242											
AZU1	566	broad.mit.edu	37	chr19	828291	828291	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggccccgccagttcccgttCctggcctccattcagaatca	8	17	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	828291	G	G	828291	3	3	86	1	0	0	0	0	1	0	0	0	1248	854	30	4	126	4	AZU1	19	828291	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08		828291	58300692	828	90243											
CHAF1A	10036	broad.mit.edu	37	chr19	4418042	4418042	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taagaaattcgtcaaaggctCtacagagaagaacaagctca	8	8	3	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4418042	G	G	4418042	3	3	86	1	0	0	0	0	1	0	0	0	3342	913	32	4	1000	4	CHAF1A	19	4418042	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3589751	4418042	54710941	829	90244											
DENND1C	79958	broad.mit.edu	37	chr19	6467742	6467742	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggacgtccaggctatatCaaagttgggctttgtggggg	16	7	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6467742	G	G	6467742	3	3	86	1	0	0	0	0	1	0	0	0	4468	826	29	4	230	4	DENND1C	19	6467742	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2049700	6467742	52661241	830	90245											
C3	718	broad.mit.edu	37	chr19	6702629	6702629	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatttagaacagagcaggCcagttgccatggctcatgcc	11	11	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6702629	T	T	6702629	1	4	86	0	1	0	0	0	0	0	0	0	2226	754	26	4		4	C3	19	6702629	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	234887	6702629	52426354	831	90246											
TRIP10	9322	broad.mit.edu	37	chr19	6751307	6751307	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacctatgcactttatttctGaccccgtggcttcggctgag	10	12	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6751307	C	C	6751307	1	2	86	0	1	0	0	0	0	0	0	0	16679	1305	45	4		4	TRIP10	19	6751307	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	48678	6751307	52377676	832	90247											
XAB2	56949	broad.mit.edu	37	chr19	7684584	7684584	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggcgttggcctgtcccccGaggcccaccctggtaatgcc	12	17	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7684584	A	A	7684584	1	1	86	0	1	0	0	0	0	0	0	0	17545	1073	37	4		4	XAB2	19	7684584	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	933277	7684584	51444399	833	90248											
XAB2	56949	broad.mit.edu	37	chr19	7685330	7685330	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctgccagaacgcgccggtCgtctgcgtggggggcagggc	19	12	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7685330	T	T	7685330	2	4	86	1	0	0	0	0	0	0	0	1	17545	871	31	4		4	XAB2	19	7685330	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	746	7685330	51443653	834	90249											
FCER2	2208	broad.mit.edu	37	chr19	7755301	7755301	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcccacctgctcctcCgggctgtggatgctgaccag	11	18	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7755301	T	T	7755301	2	4	86	1	0	0	0	0	0	0	0	1	5833	639	23	4		4	FCER2	19	7755301	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	69971	7755301	51373682	835	90250											
MUC16	94025	broad.mit.edu	37	chr19	9073567	9073567	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcagtaatagcccccaCagacacattggagaggatga	11	10	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9073567	G	G	9073567	3	3	86	1	0	0	0	0	1	0	0	0	10067	478	17	4	29972	4	MUC16	19	9073567	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1318266	9073567	50055416	836	90251											
DNM2	1785	broad.mit.edu	37	chr19	10883351	10883351	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgaccgtttctggtcgttCatggacagtgctatgggtga	13	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10883351	T	T	10883351	1	4	86	0	1	0	0	0	0	0	0	0	4712	841	29	4		4	DNM2	19	10883351	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1809784	10883351	48245632	837	90252											
GCDH	2639	broad.mit.edu	37	chr19	13005651	13005651	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagagacgcagactgtcctCtctgcgagcttccacttcta	9	13	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13005651	T	T	13005651	1	4	86	0	1	0	0	0	0	0	0	0	6349	928	32	4		4	GCDH	19	13005651	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2122300	13005651	46123332	838	90253											
NFIX	4784	broad.mit.edu	37	chr19	13186483	13186483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcccaacgatgtggatgCaggtatgggtgcgggggatc	19	7	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13186483	A	A	13186483	3	1	86	1	0	0	0	0	1	0	0	0	10469	710	25	3	975	3	NFIX	19	13186483	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	180832	13186483	45942500	839	90254											
CLEC17A	388512	broad.mit.edu	37	chr19	14720827	14720827	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtattatacagaagagtttCaccaccctaaagatccctgt	6	10	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14720827	T	T	14720827	1	4	86	0	1	0	0	0	0	0	0	0	3533	841	29	4		4	CLEC17A	19	14720827	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1534344	14720827	44408156	840	90255											
HOMER3	9454	broad.mit.edu	37	chr19	19042289	19042289	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacaggaggtgagggaaggcGaggcccaggaaccacacttg	16	10	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19042289	A	A	19042289	1	1	86	0	1	0	0	0	0	0	0	0	7347	1073	37	4		4	HOMER3	19	19042289	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4321462	19042289	40086694	841	90256											
ZNF431	170959	broad.mit.edu	37	chr19	21366647	21366647	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagagaaatcttacaaatGtgaagaatgtggtaaagcct	11	4	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21366647	C	C	21366647	3	2	86	1	0	0	0	0	1	0	0	0	18032	1377	48	4	1559	4	ZNF431	19	21366647	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2324358	21366647	37762336	842	90257											
ZNF208	7757	broad.mit.edu	37	chr19	22153389	22153389	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaccagttgaagtctttAtcacattcttcacatttgta	7	8	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22153389	T	T	22153389	1	4	86	0	1	0	0	0	0	0	0	0	17892	464	16	5		5	ZNF208	19	22153389	3'UTR	SNP	A	TCGA-17-Z057-01A-01W-0747-08	786742	22153389	36975594	843	90258											
ZNF254	9534	broad.mit.edu	37	chr19	24289400	24289400	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgtctggaacaagggaaaGagccctggaatatgaagcga	13	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24289400	C	C	24289400	3	2	86	1	0	0	0	0	1	0	0	0	17924	943	33	4	218	4	ZNF254	19	24289400	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2136011	24289400	34839583	844	90259											
ZNF507	22847	broad.mit.edu	37	chr19	32843758	32843758	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagaaagtagcagtgttGccatgttggtgccagatatt	13	5	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32843758	A	A	32843758	3	1	86	1	0	0	0	0	1	0	0	0	18080	1319	46	4	24	4	ZNF507	19	32843758	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	8554358	32843758	26285225	845	90260											
WDR62	284403	broad.mit.edu	37	chr19	36564349	36564349	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtataaggaccacagcatCtacatctgggatgtcaagga	11	8	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36564349	T	T	36564349	2	4	86	1	0	0	0	0	0	0	0	1	17440	903	32	4		4	WDR62	19	36564349	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3720591	36564349	22564634	846	90261											
ZNF382	84911	broad.mit.edu	37	chr19	37117328	37117328	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactcctcaataccaagcatGagaaaattcatcctgcagtg	6	12	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37117328	A	A	37117328	3	1	86	1	0	0	0	0	1	0	0	0	17999	1291	45	4	539	4	ZNF382	19	37117328	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	552979	37117328	22011655	847	90262											
ZNF382	84911	broad.mit.edu	37	chr19	37117865	37117865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaaccctttatttgtatcGattgtgggaagtccttccgc	10	9	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37117865	T	T	37117865	3	4	86	1	0	0	0	0	1	0	0	0	17999	1058	37	3	1076	3	ZNF382	19	37117865	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	537	37117865	22011118	848	90263											
ZNF569	148266	broad.mit.edu	37	chr19	37905078	37905078	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatattcacaatgctcctttCtcataaggcatttcacatta	3	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37905078	G	G	37905078	3	3	86	1	0	0	0	0	1	0	0	0	18127	913	32	4	1582	4	ZNF569	19	37905078	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	787213	37905078	21223905	849	90264											
ZNF781	163115	broad.mit.edu	37	chr19	38184452	38184452	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtccaacacttgtgcgtttGagatgtaaaccatcttgccc	8	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38184452	C	C	38184452	1	2	86	0	1	0	0	0	0	0	0	0	18283	1305	45	4		4	ZNF781	19	38184452	5'Flank	SNP	G	TCGA-17-Z057-01A-01W-0747-08	279374	38184452	20944531	850	90265											
ZNF573	126231	broad.mit.edu	37	chr19	38229842	38229842	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cataccagtatgaattttctGatgttgattaagatatccat	6	6	1	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38229842	C	C	38229842	3	2	86	1	0	0	0	0	1	0	0	0	18132	1299	45	4	452	4	ZNF573	19	38229842	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	45390	38229842	20899141	851	90266											
CATSPERG	57828	broad.mit.edu	37	chr19	38850164	38850164	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccccaaggaactgtccatCaaatacatggccagatcgtt	7	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38850164	G	G	38850164	3	3	86	1	0	0	0	0	1	0	0	0	2718	816	29	4	1601	4	CATSPERG	19	38850164	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	620322	38850164	20278819	852	90267											
GGN	199720	broad.mit.edu	37	chr19	38877429	38877429	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaattgggatggggccctcGggacagtgtccttcacggat	15	9	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38877429	C	C	38877429	3	2	86	1	0	0	0	0	1	0	0	0	6422	1116	39	4	1493	4	GGN	19	38877429	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	27265	38877429	20251554	853	90268											
IL28B	282617	broad.mit.edu	37	chr19	39734578	39734578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagggcggtgtgtgagccGgggccttggccaggggaagg	23	7	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39734578	T	T	39734578	1	4	86	0	1	0	0	0	0	0	0	0	7753	1131	39	1		1	IL28B	19	39734578	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	857149	39734578	19394405	854	90269											
LGALS14	56891	broad.mit.edu	37	chr19	40198008	40198008	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttgagctgtgcatctatGtgcgtcacaaggaatacaag	10	8	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40198008	A	A	40198008	3	1	86	1	0	0	0	0	1	0	0	0	8813	1377	48	4	399	4	LGALS14	19	40198008	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	463430	40198008	18930975	855	90270											
CLC	1178	broad.mit.edu	37	chr19	40228700	40228700	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccctgcctctggctttattCctgattccaagcccctccca	6	18	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40228700	A	A	40228700	1	1	86	0	1	0	0	0	0	0	0	0	3487	870	30	3		3	CLC	19	40228700	5'Flank	SNP	C	TCGA-17-Z057-01A-01W-0747-08	30692	40228700	18900283	856	90271											
FCGBP	8857	broad.mit.edu	37	chr19	40406007	40406007	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacaccatgcctttaccCgcatggcacgtgcactgctg	10	15	0	0	rs145297830	byFrequency	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40406007	A	A	40406007	2	1	86	1	0	0	0	0	0	0	0	1	5835	639	23	1		1	FCGBP	19	40406007	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	177307	40406007	18722976	857	90272											
SPTBN4	57731	broad.mit.edu	37	chr19	41029413	41029413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggccttgaaacagcacCgtgactttctcaccaccatg	9	13	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41029413	A	A	41029413	3	1	86	1	0	0	0	0	1	0	0	0	15239	652	23	1	3786	1	SPTBN4	19	41029413	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	623406	41029413	18099570	858	90273											
CYP2A6	1548	broad.mit.edu	37	chr19	41356335	41356335	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccctgaggccagcatggtGgtagtgggatgatagatggt	16	6	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41356335	A	A	41356335	1	1	86	0	1	0	0	0	0	0	0	0	4195	1363	47	4		4	CYP2A6	19	41356335	5'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	326922	41356335	17772648	859	90274											
DMRTC2	63946	broad.mit.edu	37	chr19	42352736	42352737	+	Intron	DNP	GG	TT	TT													caaatcactgctcttctctaGgcaaaatgaggggaaaacga							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42352737	TT	TT	42352736	1	4	86	0	1	0	0	0	0	0	0	0	4631	1015	35	2		2	DMRTC2	19	42352736	Intron	DNP	GG	TCGA-17-Z057-01A-01W-0747-08	996401	42352736	16776247	860	90275											
POU2F2	5452	broad.mit.edu	37	chr19	42599637	42599637	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcagagggctcgttagCccgaggcccaccgcccgcca	14	17	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42599637	G	G	42599637	1	3	86	0	1	0	0	0	0	0	0	0	12368	754	26	4		4	POU2F2	19	42599637	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	246901	42599637	16529346	861	90276											
CD177	57126	broad.mit.edu	37	chr19	43859711	43859711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctttgggaaggctgagCaggttgactcttgaggccag	15	10	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43859711	A	A	43859711	1	1	86	0	1	0	0	0	0	0	0	0	3001	725	25	3		3	CD177	19	43859711	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1260074	43859711	15269272	862	90277											
IRGC	56269	broad.mit.edu	37	chr19	44223366	44223366	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcctggtgtccaacctctCgccggcccgctacgactttc	8	18	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44223366	T	T	44223366	3	4	86	1	0	0	0	0	1	0	0	0	7908	893	31	4	658	4	IRGC	19	44223366	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	363655	44223366	14905617	863	90278											
GRIN2D	2906	broad.mit.edu	37	chr19	48907937	48907937	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggtccccttattcattgctGagaaataaggtccccacatc	7	12	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48907937	C	C	48907937	1	2	86	0	1	0	0	0	0	0	0	0	6848	1305	45	4		4	GRIN2D	19	48907937	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4684571	48907937	10221046	864	90279											
SHANK1	50944	broad.mit.edu	37	chr19	51218990	51218990	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgggtcttgtatcggaactGaggtcaagggtagggtagtg	17	5	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51218990	A	A	51218990	1	1	86	0	1	0	0	0	0	0	0	0	14377	1305	45	4		4	SHANK1	19	51218990	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2311053	51218990	7909993	865	90280											
CLEC11A	6320	broad.mit.edu	37	chr19	51226762	51226762	+	5'UTR	DEL	G	-	-													atccagacatctggaactttGggtgccaagagtccagctta							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51226762	-	-	51226762	6	5	86	0	1	1	0	1	0	0	0	0	3528	1363	47	0		0	CLEC11A	19	51226762	5'UTR	DEL	G	TCGA-17-Z057-01A-01W-0747-08	7772	51226762	7902221	866	90281											
KLK12	43849	broad.mit.edu	37	chr19	51535285	51535285	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtgctcgtggctcgtcgAggctcccaggtagccgggat	16	12	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51535285	C	C	51535285	3	2	86	1	0	0	0	0	1	0	0	0	8471	304	11	5	516	5	KLK12	19	51535285	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	308523	51535285	7593698	867	90282											
SIGLEC5	8778	broad.mit.edu	37	chr19	52132708	52132708	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggtcctcgggcctgggGgtgagggtgagctccgagga	19	10	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52132708	A	A	52132708	2	1	86	1	0	0	0	0	0	0	0	1	14424	1219	43	4		4	SIGLEC5	19	52132708	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	597423	52132708	6996275	868	90283											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52146496	52146496	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtatggggcaggaaggaaaaGaggggtagtcagtgggatgt	20	2	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52146496	C	C	52146496	1	2	86	0	1	0	0	0	0	0	0	0	14422	957	33	4		4	SIGLEC14	19	52146496	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	13788	52146496	6982487	869	90284											
FPR2	2358	broad.mit.edu	37	chr19	52272445	52272445	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggggacacatactgtactttCaactttgcatcctggggtgg	12	9	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52272445	G	G	52272445	3	3	86	1	0	0	0	0	1	0	0	0	6099	825	29	4	536	4	FPR2	19	52272445	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	125949	52272445	6856538	870	90285											
ZNF28	7576	broad.mit.edu	37	chr19	53302033	53302033	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attacacttgtaagatctctCattatggattctccaatgat	5	8	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53302033	T	T	53302033	1	4	86	0	1	0	0	0	0	0	0	0	17939	841	29	4		4	ZNF28	19	53302033	3'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1029588	53302033	5826950	871	90286											
PRKCG	5582	broad.mit.edu	37	chr19	54394900	54394900	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctggatctctaacccGtcacactcttcctcactccc	3	20	4	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54394900	C	C	54394900	1	2	86	0	1	0	0	0	0	0	0	0	12618	1160	40	4		4	PRKCG	19	54394900	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1092867	54394900	4734083	872	90287											
LAIR1	3903	broad.mit.edu	37	chr19	54867011	54867011	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcacctcctgggaactccCtgcagccagggcctaagagg	12	15	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54867011	T	T	54867011	3	4	86	1	0	0	0	0	1	0	0	0	8674	681	24	4	137	4	LAIR1	19	54867011	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	472111	54867011	4261972	873	90288											
NLRP7	199713	broad.mit.edu	37	chr19	55438892	55438892	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagattgcgccactgcactCcagcctgaatgacagagcac	9	14	0	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55438892	A	A	55438892	1	1	86	0	1	0	0	0	0	0	0	0	10577	870	30	3		3	NLRP7	19	55438892	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	571881	55438892	3690091	874	90289											
NLRP9	338321	broad.mit.edu	37	chr19	56244069	56244069	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaactctgacttcctgctttGaatacagttgttaaaaagga	7	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56244069	C	C	56244069	3	2	86	1	0	0	0	0	1	0	0	0	10579	1281	45	4	1879	4	NLRP9	19	56244069	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	805177	56244069	2884914	875	90290											
NLRP9	338321	broad.mit.edu	37	chr19	56244582	56244582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgaagactccggccaGtccctagagaggagctccag	11	13	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56244582	T	T	56244582	3	4	86	1	0	0	0	0	1	0	0	0	10579	1020	36	3	2392	3	NLRP9	19	56244582	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	513	56244582	2884401	876	90291											
NLRP13	126204	broad.mit.edu	37	chr19	56423720	56423720	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatagaccacagcccttctAtggccagactgcagagggcc	10	14	2	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56423720	G	G	56423720	3	3	86	1	0	0	0	0	1	0	0	0	10570	449	16	5	1694	5	NLRP13	19	56423720	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	179138	56423720	2705263	877	90292											
ZNF416	55659	broad.mit.edu	37	chr19	58083558	58083558	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgaggcctctccacagtgtGagattttcggtggagaatga	13	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58083558	A	A	58083558	3	1	86	1	0	0	0	0	1	0	0	0	18020	1290	45	4	74	4	ZNF416	19	58083558	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1659838	58083558	1045425	878	90293											
ZNF416	55659	broad.mit.edu	37	chr19	58086989	58086989	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacagccagacccatccctGtgcattttgggacagcaaat	8	12	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58086989	A	A	58086989	1	1	86	0	1	0	0	0	0	0	0	0	18020	1392	48	4		4	ZNF416	19	58086989	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3431	58086989	1041994	879	90294											
ZNF154	7710	broad.mit.edu	37	chr19	58213791	58213791	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtctccaatggtcattgaGactgtagcttttgctaaagg	10	7	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58213791	C	C	58213791	3	2	86	1	0	0	0	0	1	0	0	0	17861	942	33	4	791	4	ZNF154	19	58213791	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	126802	58213791	915192	880	90295											
PDYN	5173	broad.mit.edu	37	chr20	1961025	1961025	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttcctgagaccgagtcaCcaccttgaactggcgccgga	10	14	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1961025	G	G	1961025	3	3	86	1	0	0	0	0	1	0	0	0	11793	507	18	4	59	4	PDYN	20	1961025	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08		1961025	61064495	881	90296											
TGM6	343641	broad.mit.edu	37	chr20	2375102	2375102	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctctccccacccagggatCagagtcaccaaggtggactg	10	15	3	1	rs139796716	byFrequency;by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2375102	A	A	2375102	2	1	86	1	0	0	0	0	0	0	0	1	15957	816	29	3		3	TGM6	20	2375102	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	414077	2375102	60650418	882	90297											
ZNF343	79175	broad.mit.edu	37	chr20	2464480	2464480	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acacatagggtttctcaccgGagtgtgtcctctggtgtctg	12	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2464480	A	A	2464480	3	1	86	1	0	0	0	0	1	0	0	0	17984	1174	41	4	676	4	ZNF343	20	2464480	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	89378	2464480	60561040	883	90298											
TMC2	117532	broad.mit.edu	37	chr20	2597915	2597915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgccggtggcctacaCcatcatgtccctcccaccct	6	21	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2597915	A	A	2597915	3	1	86	1	0	0	0	0	1	0	0	0	16108	507	18	3	2200	3	TMC2	20	2597915	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	133435	2597915	60427605	884	90299											
MAVS	57506	broad.mit.edu	37	chr20	3835383	3835383	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccctgcctcacagcaagaGaccaggtgagcaagggaagt	13	11	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3835383	C	C	3835383	3	2	86	1	0	0	0	0	1	0	0	0	9430	942	33	4	114	4	MAVS	20	3835383	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1237468	3835383	59190137	885	90300											
KIF16B	55614	broad.mit.edu	37	chr20	16336963	16336963	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccattctccagaagagtcaaGaagacactcaccttgacctc	6	14	3	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16336963	A	A	16336963	1	1	86	0	1	0	0	0	0	0	0	0	8348	957	33	4		4	KIF16B	20	16336963	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	12501580	16336963	46688557	886	90301											
CSRP2BP	57325	broad.mit.edu	37	chr20	18142440	18142440	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catttcagatgagggatactCagcctgtatttattctttct	7	8	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18142440	G	G	18142440	1	3	86	0	1	0	0	0	0	0	0	0	4002	841	29	4		4	CSRP2BP	20	18142440	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1805477	18142440	44883080	887	90302											
NXT1	29107	broad.mit.edu	37	chr20	23335017	23335017	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgggacttcaaccagaacttCatcctgaccgcccaggcctc	8	17	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23335017	G	G	23335017	3	3	86	1	0	0	0	0	1	0	0	0	10889	825	29	4	341	4	NXT1	20	23335017	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5192577	23335017	39690503	888	90303											
BPIL1	80341	broad.mit.edu	37	chr20	31608424	31608424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggggcctctagaaaccCccgtcctgggtagggcacac	14	14	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31608424	A	A	31608424	1	1	86	0	1	0	0	0	0	0	0	0	1500	638	22	2		2	BPIL1	20	31608424	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	8273407	31608424	31417096	889	90304											
ACSS2	55902	broad.mit.edu	37	chr20	33501331	33501332	+	Intron	INS	-	G	G													gctggtgaaaaggggcaggcINSgggggggtggggctctggag							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33501332	G	G	33501331	6	5	86	0	1	1	1	0	0	0	0	0	189	783	27	0		0	ACSS2	20	33501331	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	1892907	33501331	29524189	890	90305											
GSS	2937	broad.mit.edu	37	chr20	33533875	33533875	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggggaccagtgaggggaaGagcgtgaatggggcatagct	19	6	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33533875	C	C	33533875	2	2	86	1	0	0	0	0	0	0	0	1	6895	929	33	4		4	GSS	20	33533875	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	32544	33533875	29491645	891	90306											
ERGIC3	51614	broad.mit.edu	37	chr20	34145283	34145283	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagacaacgtagtcaccctCggtgcttcctctgtctcctc	8	15	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34145283	T	T	34145283	1	4	86	0	1	0	0	0	0	0	0	0	5267	899	31	4		4	ERGIC3	20	34145283	3'UTR	SNP	C	TCGA-17-Z057-01A-01W-0747-08	611408	34145283	28880237	892	90307											
RALGAPB	57148	broad.mit.edu	37	chr20	37175215	37175215	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgtgggacaatagcacctGaaaaataggggggcaaaaaa	13	6	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37175215	C	C	37175215	1	2	86	0	1	0	0	0	0	0	0	0	13123	1305	45	4		4	RALGAPB	20	37175215	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3029932	37175215	25850305	893	90308											
R3HDML	140902	broad.mit.edu	37	chr20	42966082	42966083	+	Intron	INS	-	C	C													gtccccgtacctgccccccaINSccccccgcagtgtcccttcc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42966083	C	C	42966082	6	5	86	0	1	1	1	0	0	0	0	0	12997	174	6	0		0	R3HDML	20	42966082	Intron	INS	-	TCGA-17-Z057-01A-01W-0747-08	5790867	42966082	20059438	894	90309											
TP53TG5	27296	broad.mit.edu	37	chr20	44006141	44006141	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagtactgcatgagtatatGagcttccccaagctggggcc	12	11	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44006141	C	C	44006141	1	2	86	0	1	0	0	0	0	0	0	0	16515	1305	45	4		4	TP53TG5	20	44006141	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1040059	44006141	19019379	895	90310											
SLC12A5	57468	broad.mit.edu	37	chr20	44664478	44664478	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcagaacatctttggcgtCatcctcttcctgcggctcac	8	15	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44664478	T	T	44664478	2	4	86	1	0	0	0	0	0	0	0	1	14499	813	29	4		4	SLC12A5	20	44664478	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	658337	44664478	18361042	896	90311											
SPATA2	9825	broad.mit.edu	37	chr20	48522147	48522147	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccttggagctggaaggggcGaggccggtctatctgtacac	15	11	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48522147	A	A	48522147	1	1	86	0	1	0	0	0	0	0	0	0	15121	1073	37	4		4	SPATA2	20	48522147	3'UTR	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3857669	48522147	14503373	897	90312											
ZNF217	7764	broad.mit.edu	37	chr20	52193223	52193223	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattgccgggcaattgtgaaGagcccccacggataaattta	10	9	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52193223	A	A	52193223	3	1	86	1	0	0	0	0	1	0	0	0	17898	942	33	4	1074	4	ZNF217	20	52193223	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3671076	52193223	10832297	898	90313											
TH1L	51497	broad.mit.edu	37	chr20	57565000	57565000	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcaggggggctccgctGtgcgcaggatcgcccaggaa	18	11	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57565000	A	A	57565000	3	1	86	1	0	0	0	0	1	0	0	0	15962	1377	48	4	798	4	TH1L	20	57565000	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	5371777	57565000	5460520	899	90314											
TAF4	6874	broad.mit.edu	37	chr20	60583997	60583997	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgcctgcagccttccagagGagctctccctgctggcacag	11	16	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60583997	C	C	60583997	1	2	86	0	1	0	0	0	0	0	0	0	15645	1189	41	4		4	TAF4	20	60583997	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	3018997	60583997	2441523	900	90315											
DIDO1	11083	broad.mit.edu	37	chr20	61513176	61513176	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcctgtcgtcctcctcttCctctagagccttatcttttg	7	14	3	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61513176	T	T	61513176	3	4	86	1	0	0	0	0	1	0	0	0	4562	864	30	4	2594	4	DIDO1	20	61513176	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	929179	61513176	1512344	901	90316											
KRTAP10-3	386682	broad.mit.edu	37	chr21	45978001	45978001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgggagcacgtggggcGgcagaggagggacacgcagg	23	8	0	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45978001	T	T	45978001	3	4	86	1	0	0	0	0	1	0	0	0	8581	1116	39	1	71	1	KRTAP10-3	21	45978001	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08		45978001	2151894	902	90317											
UBE2G2	7327	broad.mit.edu	37	chr21	46197310	46197310	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcaggaaaaacaccaaactCaaagcaggtgtcttctgggc	11	10	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46197310	G	G	46197310	3	3	86	1	0	0	0	0	1	0	0	0	16983	835	29	4	361	4	UBE2G2	21	46197310	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	219309	46197310	1932585	903	90318											
XKR3	150165	broad.mit.edu	37	chr22	17288609	17288609	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgttggaggcagtgaatgaGaaatatttgtgtcacttacc	11	5	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17288609	C	C	17288609	1	2	86	0	1	0	0	0	0	0	0	0	17559	957	33	4		4	XKR3	22	17288609	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08		17288609	34015957	904	90319											
CECR2	27443	broad.mit.edu	37	chr22	17978517	17978517	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactatattggtatttctatGgaacacgaatgtacaaagag	8	6	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17978517	T	T	17978517	4	4	86	1	0	0	0	0	0	1	0	0	3236	1349	47	2	367	2	CECR2	22	17978517	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	689908	17978517	33326049	905	90320											
C22orf13	83606	broad.mit.edu	37	chr22	24942941	24942941	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacagctgattcacccgggtCtcttctgtgtcaaagtgctt	9	11	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24942941	G	G	24942941	3	3	86	1	0	0	0	0	1	0	0	0	2157	912	32	4	407	4	C22orf13	22	24942941	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6964424	24942941	26361625	906	90321											
SGSM1	129049	broad.mit.edu	37	chr22	25280126	25280126	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcgatgctggacagggactGacagccaggatctgggagca	16	9	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25280126	A	A	25280126	2	1	86	1	0	0	0	0	0	0	0	1	14335	1277	45	4		4	SGSM1	22	25280126	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	337185	25280126	26024440	907	90322											
HPS4	89781	broad.mit.edu	37	chr22	26862054	26862054	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaactcgattcttgaagctCcataacatccattttcctat	4	11	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26862054	T	T	26862054	1	4	86	0	1	0	0	0	0	0	0	0	7408	870	30	4		4	HPS4	22	26862054	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1581928	26862054	24442512	908	90323											
CRYBA4	1413	broad.mit.edu	37	chr22	27026420	27026420	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctcatgccccgaccttccAggtgcagagcatccgcagga	10	16	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27026420	T	T	27026420	3	4	86	1	0	0	0	0	1	0	0	0	3941	188	7	5	578	5	CRYBA4	22	27026420	Missense_Mutation	SNP	A	TCGA-17-Z057-01A-01W-0747-08	164366	27026420	24278146	909	90324											
RBM9	23543	broad.mit.edu	37	chr22	36177604	36177604	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacatctgggggattaaaatCtactttaattgtaaaatcca	6	7	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36177604	G	G	36177604	1	3	86	0	1	0	0	0	0	0	0	0	13255	928	32	4		4	RBM9	22	36177604	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	9151184	36177604	15126962	910	90325											
MYH9	4627	broad.mit.edu	37	chr22	36689587	36689587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtccaaaacccaggaaCcccacacccttgaggagagg	11	13	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36689587	A	A	36689587	1	1	86	0	1	0	0	0	0	0	0	0	10136	522	18	3		3	MYH9	22	36689587	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	511983	36689587	14614979	911	90326											
APOBEC3F	200316	broad.mit.edu	37	chr22	39441230	39441230	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attatggacgatgaaggtgaGaggtggaggggtcaggggag	21	2	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39441230	C	C	39441230	1	2	86	0	1	0	0	0	0	0	0	0	795	957	33	4		4	APOBEC3F	22	39441230	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2751643	39441230	11863336	912	90327											
ENTHD1	150350	broad.mit.edu	37	chr22	40232109	40232109	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccagtggtaacctatgagTgttaatcactttaatatgtc	8	7	1	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40232109	C	C	40232109	1	2	86	0	1	0	0	0	0	0	0	0	5179	1711	59	5		5	ENTHD1	22	40232109	Intron	SNP	T	TCGA-17-Z057-01A-01W-0747-08	790879	40232109	11072457	913	90328											
SGSM3	27352	broad.mit.edu	37	chr22	40804797	40804797	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctttggtgtcccctcaGgttggatgaagatggcaaag	15	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40804797	A	A	40804797	5	1	86	1	0	0	0	0	0	0	1	0	14337	1014	35	4	1919	4	SGSM3	22	40804797	Splice_Site	SNP	G	TCGA-17-Z057-01A-01W-0747-08	572688	40804797	10499769	914	90329											
MKL1	57591	broad.mit.edu	37	chr22	40825747	40825747	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcttcagctgcttggccTggagggatggctcagccgag	15	11	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40825747	C	C	40825747	3	2	86	1	0	0	0	0	1	0	0	0	9694	1580	55	5	2667	5	MKL1	22	40825747	Missense_Mutation	SNP	T	TCGA-17-Z057-01A-01W-0747-08	20950	40825747	10478819	915	90330											
ARFGAP3	26286	broad.mit.edu	37	chr22	43213182	43213182	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaatatgaatcgtcactgtCatcattatacttttttcttg	4	7	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43213182	A	A	43213182	3	1	86	1	0	0	0	0	1	0	0	0	853	826	29	3	544	3	ARFGAP3	22	43213182	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2387435	43213182	8091384	916	90331											
SMC1B	27127	broad.mit.edu	37	chr22	45748426	45748426	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtttgcctggggccacacaGttatagctaattccctccaa	8	13	0	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45748426	C	C	45748426	3	2	86	1	0	0	0	0	1	0	0	0	14896	1020	36	4	393	4	SMC1B	22	45748426	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2535244	45748426	5556140	917	90332											
MAPK8IP2	23542	broad.mit.edu	37	chr22	51043818	51043818	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accgagtcctttggccttttCtcctgtctggtcaacggcga	10	13	3	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51043818	T	T	51043818	2	4	86	1	0	0	0	0	0	0	0	1	9377	912	32	4		4	MAPK8IP2	22	51043818	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	5295392	51043818	260748	918	90333											
ASMT	438	broad.mit.edu	37	chrX	1746857	1746857	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaaattgatcaaattcctGaggaggtgcaacgtgaccct	9	8	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1746857	C	C	1746857	1	2	86	0	1	0	0	0	0	0	0	0	1049	1305	45	4		4	ASMT	23	1746857	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08		1746857	153523703	919	90334											
GEMIN8	54960	broad.mit.edu	37	chrX	14038431	14038431	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagtcctgccaggccacatGatggtcatagaaggactgag	13	9	1	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14038431	A	A	14038431	3	1	86	1	0	0	0	0	1	0	0	0	6398	1290	45	4	498	4	GEMIN8	23	14038431	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	12291574	14038431	141232129	920	90335											
GLRA2	2742	broad.mit.edu	37	chrX	14748225	14748226	+	Intron	DNP	CC	AA	AA													tccaaaagcctcccacaccaCcagttaactgtgatttatcc							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	14748226	AA	AA	14748225	1	1	86	0	1	0	0	0	0	0	0	0	6519	522	18	3		3	GLRA2	23	14748225	Intron	DNP	CC	TCGA-17-Z057-01A-01W-0747-08	709794	14748225	140522335	921	90336											
MBTPS2	51360	broad.mit.edu	37	chrX	21887591	21887591	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtcttcatgcattatctGatttggttttaccctcttcc	5	11	4	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21887591	C	C	21887591	1	2	86	0	1	0	0	0	0	0	0	0	9455	1305	45	4		4	MBTPS2	23	21887591	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7139366	21887591	133382969	922	90337											
PCYT1B	9468	broad.mit.edu	37	chrX	24665111	24665111	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgtctttacttaccagtcGaggctgtgggcatgtgtgct	12	8	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24665111	A	A	24665111	4	1	86	1	0	0	0	0	0	1	0	0	11705	1066	37	4	1066	4	PCYT1B	23	24665111	Nonsense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2777520	24665111	130605449	923	90338											
DMD	1756	broad.mit.edu	37	chrX	32407901	32407901	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagatatacagaaaaatAaaaacaaaataaagcagtat	5	4	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32407901	G	G	32407901	1	3	86	0	1	0	0	0	0	0	0	0	4620	377	13	5		5	DMD	23	32407901	Intron	SNP	A	TCGA-17-Z057-01A-01W-0747-08	7742790	32407901	122862659	924	90339											
DMD	1756	broad.mit.edu	37	chrX	32867997	32867997	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaatgatacattttcaCgattatccccttttgaaaac	3	11	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32867997	A	A	32867997	1	1	86	0	1	0	0	0	0	0	0	0	4620	551	19	3		3	DMD	23	32867997	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	460096	32867997	122402563	925	90340											
USP9X	8239	broad.mit.edu	37	chrX	41075707	41075707	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggacacaatagaccaagatGatgagttgataagatatata	9	4	0	6			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41075707	C	C	41075707	3	2	86	1	0	0	0	0	1	0	0	0	17217	1290	45	4	6021	4	USP9X	23	41075707	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	8207710	41075707	114194853	926	90341											
SSX3	10214	broad.mit.edu	37	chrX	48214053	48214053	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccagacttgtctgtacctaGaactttctgttacctagttt	6	11	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48214053	C	C	48214053	1	2	86	0	1	0	0	0	0	0	0	0	15323	957	33	4		4	SSX3	23	48214053	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7138346	48214053	107056507	927	90342											
GRIPAP1	56850	broad.mit.edu	37	chrX	48854568	48854571	+	Frame_Shift_Del	DEL	GAGC	-	-													cacaagggatccccttacctGagctttcttgctcttgctca							TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48854571	-	-	48854568	7	5	86	1	0	1	0	1	0	0	0	0	6855	1299	45	0	2475	0	GRIPAP1	23	48854568	Frame_Shift_Del	DEL	GAGC	TCGA-17-Z057-01A-01W-0747-08	640515	48854568	106415992	928	90343											
HUWE1	10075	broad.mit.edu	37	chrX	53578370	53578370	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgcctagctggttctgtaGaacttcccgacggatgtcat	10	10	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53578370	A	A	53578370	2	1	86	1	0	0	0	0	0	0	0	1	7531	933	33	4		4	HUWE1	23	53578370	Silent	SNP	G	TCGA-17-Z057-01A-01W-0747-08	4723802	53578370	101692190	929	90344											
YIPF6	286451	broad.mit.edu	37	chrX	67738586	67738586	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacagaaaatattaccttCgcttctgtcttttcttgtct	5	9	4	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67738586	A	A	67738586	1	1	86	0	1	0	0	0	0	0	0	0	17609	899	31	3		3	YIPF6	23	67738586	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	14160216	67738586	87531974	930	90345											
DLG3	1741	broad.mit.edu	37	chrX	69669515	69669515	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggggtaggggcacagtgtCatgcctctcgggcttccccc	15	13	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69669515	T	T	69669515	1	4	86	0	1	0	0	0	0	0	0	0	4596	841	29	4		4	DLG3	23	69669515	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1930929	69669515	85601045	931	90346											
PIN4	5303	broad.mit.edu	37	chrX	71401525	71401525	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagccgcaataagaacggtCaattgagatgcggctttcag	13	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71401525	G	G	71401525	1	3	86	0	1	0	0	0	0	0	0	0	12026	841	29	4		4	PIN4	23	71401525	5'Flank	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1732010	71401525	83869035	932	90347											
MAGEE2	139599	broad.mit.edu	37	chrX	75004229	75004229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggttccttgtgttccCaaagaggttgttgatcctct	12	8	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75004229	A	A	75004229	3	1	86	1	0	0	0	0	1	0	0	0	9278	594	21	2	917	2	MAGEE2	23	75004229	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3602704	75004229	80266331	933	90348											
ATP7A	538	broad.mit.edu	37	chrX	77266610	77266610	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgacaataccatggcttaGaatttctctatacaatattt	4	7	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77266610	C	C	77266610	1	2	86	0	1	0	0	0	0	0	0	0	1194	957	33	4		4	ATP7A	23	77266610	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2262381	77266610	78003950	934	90349											
DIAPH2	1730	broad.mit.edu	37	chrX	96048545	96048545	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggctgggaagtccaaggtCtatgtgctagcatattcctt	12	8	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96048545	T	T	96048545	1	4	86	0	1	0	0	0	0	0	0	0	4559	928	32	4		4	DIAPH2	23	96048545	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	18781935	96048545	59222015	935	90350											
NXF3	56000	broad.mit.edu	37	chrX	102331119	102331119	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accggaagcccaagttcaatCcccaggccacccaacctctg	7	18	2	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102331119	A	A	102331119	1	1	86	0	1	0	0	0	0	0	0	0	10880	870	30	3		3	NXF3	23	102331119	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	6282574	102331119	52939441	936	90351											
TEX13A	56157	broad.mit.edu	37	chrX	104464212	104464212	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacgtgggggaactgggtctCcatgggggcagccccagcct	16	13	1	0			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104464212	G	G	104464212	3	3	86	1	0	0	0	0	1	0	0	0	15898	856	30	4	569	4	TEX13A	23	104464212	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	2133093	104464212	50806348	937	90352											
CXorf41	139212	broad.mit.edu	37	chrX	106459969	106459969	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaccccaaatagaagagctCaaaggtaagttatttaacaa	6	9	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106459969	G	G	106459969	2	3	86	1	0	0	0	0	0	0	0	1	4143	813	29	4		4	CXorf41	23	106459969	Silent	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1995757	106459969	48810591	938	90353											
ZCCHC16	340595	broad.mit.edu	37	chrX	111697745	111697745	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaccattggccttttccaTgaagaagaggcaacattgag	10	9	0	5			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111697745	G	G	111697745	1	3	86	0	1	0	0	0	0	0	0	0	17710	1479	51	5		5	ZCCHC16	23	111697745	5'UTR	SNP	T	TCGA-17-Z057-01A-01W-0747-08	5237776	111697745	43572815	939	90354											
KIAA1210	57481	broad.mit.edu	37	chrX	118250649	118250649	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaagtgaaaaatgaaaatGaggcagagtgtgatggtaga	15	1	0	6			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118250649	A	A	118250649	1	1	86	0	1	0	0	0	0	0	0	0	8284	1305	45	4		4	KIAA1210	23	118250649	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	6552904	118250649	37019911	940	90355											
ENOX2	10495	broad.mit.edu	37	chrX	129801717	129801717	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgagaatttggaatcatCtgaaaaaaatatatttttat	5	3	3	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129801717	T	T	129801717	5	4	86	1	0	0	0	0	0	0	1	0	5169	927	32	4	1083	4	ENOX2	23	129801717	Splice_Site	SNP	C	TCGA-17-Z057-01A-01W-0747-08	11551068	129801717	25468843	941	90356											
RAP2C	57826	broad.mit.edu	37	chrX	131351092	131351092	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccgtttttgatgtagagatCtctcatggaggcaaactgct	11	8	2	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131351092	G	G	131351092	3	3	86	1	0	0	0	0	1	0	0	0	13150	913	32	4	354	4	RAP2C	23	131351092	Missense_Mutation	SNP	C	TCGA-17-Z057-01A-01W-0747-08	1549375	131351092	23919468	942	90357											
SAGE1	55511	broad.mit.edu	37	chrX	134986565	134986565	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttcctagatactgagcatCagtggggcatgcctgtgcca	11	10	1	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134986565	T	T	134986565	1	4	86	0	1	0	0	0	0	0	0	0	13920	841	29	4		4	SAGE1	23	134986565	Intron	SNP	C	TCGA-17-Z057-01A-01W-0747-08	3635473	134986565	20283995	943	90358											
SPANXN2	494119	broad.mit.edu	37	chrX	142795247	142795247	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcctgtgaagatccttcaGatgagtccaggtcttcgtcc	9	13	2	4			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142795247	C	C	142795247	3	2	86	1	0	0	0	0	1	0	0	0	15107	942	33	4	115	4	SPANXN2	23	142795247	Missense_Mutation	SNP	G	TCGA-17-Z057-01A-01W-0747-08	7808682	142795247	12475313	944	90359											
ARHGAP4	393	broad.mit.edu	37	chrX	153184186	153184186	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcactgcctgagaccatggaGaacttggattcctgagcaaa	11	10	0	3			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153184186	A	A	153184186	1	1	86	0	1	0	0	0	0	0	0	0	887	957	33	4		4	ARHGAP4	23	153184186	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	10388939	153184186	2086374	945	90360											
IL9R	3581	broad.mit.edu	37	chrX	155234896	155234896	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtattctcgagggctgaggGacccagccccaccttcacca	10	15	2	1			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155234896	A	A	155234896	1	1	86	0	1	0	0	0	0	0	0	0	7778	1189	41	4		4	IL9R	23	155234896	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	2050710	155234896	35664	946	90361											
IL9R	3581	broad.mit.edu	37	chrX	155235949	155235949	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgactgtgtgcatgtgtGagtgtgtggtgggtgggcca	20	4	0	2			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155235949	C	C	155235949	1	2	86	0	1	0	0	0	0	0	0	0	7778	1305	45	4		4	IL9R	23	155235949	Intron	SNP	G	TCGA-17-Z057-01A-01W-0747-08	1053	155235949	34611	947	90362											
KIAA1751	85452	broad.mit.edu	37	chr1	1903428	1903428	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggcctacccggttcgcGgagatgctgcccttcagcgc	15	15	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1903428	T	T	1903428	2	4	87	1	0	0	0	0	0	0	0	1	8326	1103	39	1		1	KIAA1751	1	1903428	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08		1903428	247347193	1	90363											
TP73	7161	broad.mit.edu	37	chr1	3599745	3599745	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgactacatctgtcatgGtgagtgggggggctgccctc	15	10	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3599745	A	A	3599745	5	1	87	1	0	0	0	0	0	0	1	0	16517	1275	44	4	193	4	TP73	1	3599745	Splice_Site	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1696317	3599745	245650876	2	90364											
CLCNKA	1187	broad.mit.edu	37	chr1	16358322	16358322	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagacgtgaccgagtatccCctggtggagagcacaggtgc	14	11	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16358322	T	T	16358322	2	4	87	1	0	0	0	0	0	0	0	1	3500	610	22	4		4	CLCNKA	1	16358322	Silent	SNP	C	TCGA-17-Z058-01A-01W-0747-08	12758577	16358322	232892299	3	90365											
PADI2	11240	broad.mit.edu	37	chr1	17420155	17420155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggatggccccctggcCctcggggccccaggtccagg	15	17	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17420155	A	A	17420155	3	1	87	1	0	0	0	0	1	0	0	0	11472	623	22	2	1609	2	PADI2	1	17420155	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1061833	17420155	231830466	4	90366											
PINK1	65018	broad.mit.edu	37	chr1	20975435	20975435	+	Intron	DEL	G	-	-													tcaggtgatgtgcaggacatGaaaaggttagatgggcgggc							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20975435	-	-	20975435	6	5	87	0	1	1	0	1	0	0	0	0	12027	1305	45	0		0	PINK1	1	20975435	Intron	DEL	G	TCGA-17-Z058-01A-01W-0747-08	3555280	20975435	228275186	5	90367											
CSMD2	114784	broad.mit.edu	37	chr1	34102186	34102186	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatacaaacacgtgcacacAcacagagggctcatgaggag	10	10	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34102186	G	G	34102186	1	3	87	0	1	0	0	0	0	0	0	0	3979	174	6	5		5	CSMD2	1	34102186	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	13126751	34102186	215148435	6	90368											
OSCP1	127700	broad.mit.edu	37	chr1	36909719	36909719	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaacataccaattccaaTgatcttatctatgaaacttt	2	8	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36909719	C	C	36909719	1	2	87	0	1	0	0	0	0	0	0	0	11380	1479	51	5		5	OSCP1	1	36909719	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	2807533	36909719	212340902	7	90369											
TMEM53	79639	broad.mit.edu	37	chr1	45125823	45125823	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccctcacggcagcccaggGgagagggcaccagagtactc	14	14	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45125823	A	A	45125823	1	1	87	0	1	0	0	0	0	0	0	0	16302	1247	43	4		4	TMEM53	1	45125823	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8216104	45125823	204124798	8	90370											
MRPL37	51253	broad.mit.edu	37	chr1	54683911	54683911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagctctatatttgcatGgtgctgcgtgagcggaggac	13	7	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54683911	T	T	54683911	3	4	87	1	0	0	0	0	1	0	0	0	9894	1348	47	2	1287	2	MRPL37	1	54683911	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	9558088	54683911	194566710	9	90371											
C1orf175	374977	broad.mit.edu	37	chr1	55151912	55151912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccacgacatcccagcagCctcccctctgccccataggc	9	20	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55151912	A	A	55151912	1	1	87	0	1	0	0	0	0	0	0	0	2036	754	26	3		3	C1orf175	1	55151912	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	468001	55151912	194098709	10	90372											
C1orf175	374977	broad.mit.edu	37	chr1	55167778	55167778	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcacgagaggtcgtgCgctcctcctgcatcaacctg	11	16	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55167778	T	T	55167778	3	4	87	1	0	0	0	0	1	0	0	0	2036	768	27	4	3371	4	C1orf175	1	55167778	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	15866	55167778	194082843	11	90373											
CYP2J2	1573	broad.mit.edu	37	chr1	60377194	60377195	+	Intron	INS	-	A	A													tattttaacttcaaaaacccINSaaaaaaaactaaaaggaaaa							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60377195	A	A	60377194	6	5	87	0	1	1	1	0	0	0	0	0	4205	609	21	0		0	CYP2J2	1	60377194	Intron	INS	-	TCGA-17-Z058-01A-01W-0747-08	5209416	60377194	188873427	12	90374											
RABGGTB	5876	broad.mit.edu	37	chr1	76253196	76253196	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagggcactccacagaaGgatgttattatcaagtcaga	10	7	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76253196	A	A	76253196	2	1	87	1	0	0	0	0	0	0	0	1	13076	991	35	4		4	RABGGTB	1	76253196	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	15876002	76253196	172997425	13	90375											
LPHN2	23266	broad.mit.edu	37	chr1	82302846	82302846	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttattattttaaaaaTaggtgttaaaattatttcct	4	2	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82302846	A	A	82302846	1	1	87	0	1	0	0	0	0	0	0	0	9003	1421	49	5		5	LPHN2	1	82302846	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	6049650	82302846	166947775	14	90376											
CCBL2	56267	broad.mit.edu	37	chr1	89408497	89408497	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgtgatcagcccgcctcGgcctcccaaagtgctgcgat	10	17	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89408497	A	A	89408497	1	1	87	0	1	0	0	0	0	0	0	0	2759	1131	39	4		4	CCBL2	1	89408497	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	7105651	89408497	159842124	15	90377											
TBX15	6913	broad.mit.edu	37	chr1	119441650	119441651	+	Splice_Site	DNP	CC	AA	AA													ggccttgctccagggctttaCcttgctgcttctgcatggtg							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	119441651	AA	AA	119441650	5	1	87	1	0	0	0	0	0	0	1	0	15774	521	18	3	791	3	TBX15	1	119441650	Splice_Site	DNP	CC	TCGA-17-Z058-01A-01W-0747-08	30033153	119441650	129808971	16	90378											
HAO2	51179	broad.mit.edu	37	chr1	119935113	119935113	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttattcccaaggtaaTtctcacttcacagataatcc	3	12	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119935113	A	A	119935113	1	1	87	0	1	0	0	0	0	0	0	0	7018	1508	52	5		5	HAO2	1	119935113	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	493463	119935113	129315508	17	90379											
NOTCH2	4853	broad.mit.edu	37	chr1	120458798	120458798	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggcggcagtggccaacaTagggttgggtgaggcctgta	19	7	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120458798	C	C	120458798	3	2	87	1	0	0	0	0	1	0	0	0	10643	1406	49	5	872	5	NOTCH2	1	120458798	Missense_Mutation	SNP	T	TCGA-17-Z058-01A-01W-0747-08	523685	120458798	128791823	18	90380											
NBPF10	100132406	broad.mit.edu	37	chr1	145487588	145487588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggacctaaagcaattctgGggaaattattctggcaagca	11	7	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145487588	T	T	145487588	1	4	87	0	1	0	0	0	0	0	0	0	10287	1247	43	2		2	NBPF10	1	145487588	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	25028790	145487588	103763033	19	90381											
FLG2	388698	broad.mit.edu	37	chr1	152325391	152325391	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtccagtggtatctcctAtctgtccatgagtagttccg	9	10	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152325391	C	C	152325391	3	2	87	1	0	0	0	0	1	0	0	0	5980	449	16	5	2308	5	FLG2	1	152325391	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	6837803	152325391	96925230	20	90382											
S100A5	6276	broad.mit.edu	37	chr1	153513741	153513741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccctcttctccctgagCgcatgcccgcttgtggggcc	11	17	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153513741	A	A	153513741	1	1	87	0	1	0	0	0	0	0	0	0	13892	783	27	3		3	S100A5	1	153513741	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1188350	153513741	95736880	21	90383											
NPR1	4881	broad.mit.edu	37	chr1	153656052	153656052	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccttcccctaagcacagtCgagtaggtgctcctgtccca	8	15	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153656052	A	A	153656052	1	1	87	0	1	0	0	0	0	0	0	0	10689	899	31	3		3	NPR1	1	153656052	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	142311	153656052	95594569	22	90384											
CD1E	913	broad.mit.edu	37	chr1	158325483	158325483	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgagatgtgtgggttcagGactgtttcttagacaagaga	13	4	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158325483	T	T	158325483	1	4	87	0	1	0	0	0	0	0	0	0	3008	1189	41	3		3	CD1E	1	158325483	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4669431	158325483	90925138	23	90385											
SLC9A11	284525	broad.mit.edu	37	chr1	173505153	173505153	+	Intron	DEL	A	-	-													gctatactttgggttaatatAaaaggggaaggtgtactaag							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	173505153	-	-	173505153	6	5	87	0	1	1	0	1	0	0	0	0	14825	377	13	0		0	SLC9A11	1	173505153	Intron	DEL	A	TCGA-17-Z058-01A-01W-0747-08	15179670	173505153	75745468	24	90386											
TNN	63923	broad.mit.edu	37	chr1	175105910	175105910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgttgagtgcttactcGcacacatgggttgattgatt	10	8	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175105910	T	T	175105910	1	4	87	0	1	0	0	0	0	0	0	0	16446	1102	38	3		3	TNN	1	175105910	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1600757	175105910	74144711	25	90387											
ZNF648	127665	broad.mit.edu	37	chr1	182027149	182027149	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtccacttgtgccatgatGttcaggcgcttctattgcct	10	11	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182027149	A	A	182027149	1	1	87	0	1	0	0	0	0	0	0	0	18190	1392	48	4		4	ZNF648	1	182027149	5'UTR	SNP	G	TCGA-17-Z058-01A-01W-0747-08	6921239	182027149	67223472	26	90388											
CDC73	79577	broad.mit.edu	37	chr1	193119589	193119589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggcctgatgtttaagGgtaagggttggcaaagtaat	15	3	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193119589	T	T	193119589	1	4	87	0	1	0	0	0	0	0	0	0	3115	1247	43	2		2	CDC73	1	193119589	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	11092440	193119589	56131032	27	90389											
PTPRC	5788	broad.mit.edu	37	chr1	198666181	198666181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaaattgcaggaaattAgtatctgtgaaatatagatc	9	4	1	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198666181	T	T	198666181	1	4	87	0	1	0	0	0	0	0	0	0	12905	435	15	5		5	PTPRC	1	198666181	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	5546592	198666181	50584440	28	90390											
KIF14	9928	broad.mit.edu	37	chr1	200562988	200562988	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataattctgcttgggctattCctttggtgttaagattcata	8	6	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200562988	A	A	200562988	1	1	87	0	1	0	0	0	0	0	0	0	8346	870	30	3		3	KIF14	1	200562988	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1896807	200562988	48687633	29	90391											
CACNA1S	779	broad.mit.edu	37	chr1	201035586	201035586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccttccccttccctttccTccagccgtgagagtgtgccc	7	19	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201035586	C	C	201035586	1	2	87	0	1	0	0	0	0	0	0	0	2573	1566	54	5		5	CACNA1S	1	201035586	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	472598	201035586	48215035	30	90392											
RNPEP	6051	broad.mit.edu	37	chr1	201974945	201974945	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcaacttcctggagtttaTatcccctcaggataatctat	6	10	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201974945	C	C	201974945	1	2	87	0	1	0	0	0	0	0	0	0	13620	1421	49	5		5	RNPEP	1	201974945	3'UTR	SNP	T	TCGA-17-Z058-01A-01W-0747-08	939359	201974945	47275676	31	90393											
SRGAP2	23380	broad.mit.edu	37	chr1	206567072	206567072	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgagggcacctcttttctGgtttcagaatactcgtcaga	9	11	4	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206567072	C	C	206567072	1	2	87	0	1	0	0	0	0	0	0	0	15264	1363	47	4		4	SRGAP2	1	206567072	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4592127	206567072	42683549	32	90394											
ITPKB	3707	broad.mit.edu	37	chr1	226895757	226895757	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtagctcaaagttcacactCaggaatcagaccacacagtt	7	11	4	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226895757	A	A	226895757	1	1	87	0	1	0	0	0	0	0	0	0	7988	841	29	3		3	ITPKB	1	226895757	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	20328685	226895757	22354864	33	90395											
OBSCN	84033	broad.mit.edu	37	chr1	228527676	228527676	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgcagcagtgcgacacGgacgacgacgtggccatgtg	16	10	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228527676	T	T	228527676	2	4	87	1	0	0	0	0	0	0	0	1	10907	1103	39	1		1	OBSCN	1	228527676	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1631919	228527676	20722945	34	90396											
ERO1LB	56605	broad.mit.edu	37	chr1	236381769	236381769	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtccataattaaaaggcTttccacagtcactttatgtc	5	9	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236381769	C	C	236381769	1	2	87	0	1	0	0	0	0	0	0	0	5282	1624	56	5		5	ERO1LB	1	236381769	3'UTR	SNP	T	TCGA-17-Z058-01A-01W-0747-08	7854093	236381769	12868852	35	90397											
RYR2	6262	broad.mit.edu	37	chr1	237823355	237823355	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagccattaatgaagccatAtaagctattgtctgaaaagg	8	7	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237823355	G	G	237823355	3	3	87	1	0	0	0	0	1	0	0	0	13880	449	16	5	8497	5	RYR2	1	237823355	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	1441586	237823355	11427266	36	90398											
RYR2	6262	broad.mit.edu	37	chr1	237995996	237995996	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccctacccctctctctcCctctctcaatttctctgctc	1	20	5	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237995996	A	A	237995996	1	1	87	0	1	0	0	0	0	0	0	0	13880	638	22	2		2	RYR2	1	237995996	3'UTR	SNP	C	TCGA-17-Z058-01A-01W-0747-08	172641	237995996	11254625	37	90399											
CEP170	9859	broad.mit.edu	37	chr1	243305790	243305790	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataattttagaaaagaagTttaatcccttttaaataaac	3	4	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243305790	C	C	243305790	1	2	87	0	1	0	0	0	0	0	0	0	3280	1740	60	5		5	CEP170	1	243305790	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	5309794	243305790	5944831	38	90400											
C1orf101	257044	broad.mit.edu	37	chr1	244768913	244768913	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagacaggatttaaacctAagcacttctgactcagaagc	7	9	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	244768913	C	C	244768913	1	2	87	0	1	0	0	0	0	0	0	0	1996	377	13	5		5	C1orf101	1	244768913	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	1463123	244768913	4481708	39	90401											
C1orf150	148823	broad.mit.edu	37	chr1	247712618	247712618	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaatggtgaggtacattgtGcttctagaaggttaagcctg	13	5	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247712618	C	C	247712618	1	2	87	0	1	0	0	0	0	0	0	0	2024	1334	46	4		4	C1orf150	1	247712618	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	2943705	247712618	1538003	40	90402											
TPO	7173	broad.mit.edu	37	chr2	1488670	1488670	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggtccccatgaactcttcCttctttttttaattttttta	3	10	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1488670	G	G	1488670	1	3	87	0	1	0	0	0	0	0	0	0	16534	696	24	4		4	TPO	2	1488670	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08		1488670	241710703	41	90403											
NRXN1	9378	broad.mit.edu	37	chr2	50722947	50722947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattctggtcagtctttGcagaaggtacaaacacaccc	8	10	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50722947	T	T	50722947	1	4	87	0	1	0	0	0	0	0	0	0	10760	1334	46	3		3	NRXN1	2	50722947	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	49234277	50722947	192476426	42	90404											
OTX1	5013	broad.mit.edu	37	chr2	63283497	63283497	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcaactacctgcgccctcCgtggtcccgatcctgttgct	9	17	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63283497	T	T	63283497	1	4	87	0	1	0	0	0	0	0	0	0	11414	667	23	4		4	OTX1	2	63283497	3'UTR	SNP	C	TCGA-17-Z058-01A-01W-0747-08	12560550	63283497	179915876	43	90405											
CD207	50489	broad.mit.edu	37	chr2	71060984	71060984	+	Frame_Shift_Del	DEL	G	-	-													taacttcaggaactgagaacGcacataacccaggctctcat							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71060984	-	-	71060984	7	5	87	1	0	1	0	1	0	0	0	0	3013	1087	38	0	644	0	CD207	2	71060984	Frame_Shift_Del	DEL	G	TCGA-17-Z058-01A-01W-0747-08	7777487	71060984	172138389	44	90406											
HTRA2	27429	broad.mit.edu	37	chr2	74756996	74756996	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggcagggaggagtcggcCtcccggaatcctggtcccgg	18	12	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74756996	G	G	74756996	1	3	87	0	1	0	0	0	0	0	0	0	7524	696	24	4		4	HTRA2	2	74756996	5'UTR	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3696012	74756996	168442377	45	90407											
SUCLG1	8802	broad.mit.edu	37	chr2	84660607	84660607	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattgtgtttctatgttagActaaaacatggtaaactaaa	7	4	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84660607	C	C	84660607	1	2	87	0	1	0	0	0	0	0	0	0	15482	290	10	5		5	SUCLG1	2	84660607	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	9903611	84660607	158538766	46	90408											
CD8B	926	broad.mit.edu	37	chr2	87073892	87073892	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggtgatggggctacaaagTgggcctggaaaacacacatg	15	7	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87073892	A	A	87073892	2	1	87	1	0	0	0	0	0	0	0	1	3075	1683	59	5		5	CD8B	2	87073892	Silent	SNP	T	TCGA-17-Z058-01A-01W-0747-08	2413285	87073892	156125481	47	90409											
RMND5A	64795	broad.mit.edu	37	chr2	87565781	87565781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaattcaaagtagatcaaCaattttggctctactcaaag	5	7	4	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87565781	T	T	87565781	1	4	87	0	1	0	0	0	0	0	0	0	13508	493	17	4		4	RMND5A	2	87565781	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	491889	87565781	155633592	48	90410											
ANKRD36	375248	broad.mit.edu	37	chr2	97862261	97862261	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacagaggttgatgctaactCtgcttgaatgtatggatatc	11	6	1	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97862261	G	G	97862261	1	3	87	0	1	0	0	0	0	0	0	0	665	928	32	4		4	ANKRD36	2	97862261	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	10296480	97862261	145337112	49	90411											
IL1RL1	9173	broad.mit.edu	37	chr2	102968257	102968257	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcaagtggagggaggaccAcattgccaataaaaggtccc	11	10	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102968257	T	T	102968257	3	4	87	1	0	0	0	0	1	0	0	0	7733	159	6	5	1602	5	IL1RL1	2	102968257	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	5105996	102968257	140231116	50	90412											
ANAPC1	64682	broad.mit.edu	37	chr2	112545863	112545863	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaagggcacagagaagagCggcaatggaagaatttgatg	14	4	0	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112545863	T	T	112545863	3	4	87	1	0	0	0	0	1	0	0	0	598	768	27	4	1127	4	ANAPC1	2	112545863	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	9577606	112545863	130653510	51	90413											
CCDC93	54520	broad.mit.edu	37	chr2	118703059	118703059	+	Intron	DEL	C	-	-													ggagagtggaaagctggccgCctgccctcaggagacaatgc							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118703059	-	-	118703059	6	5	87	0	1	1	0	1	0	0	0	0	2900	754	26	0		0	CCDC93	2	118703059	Intron	DEL	C	TCGA-17-Z058-01A-01W-0747-08	6157196	118703059	124496314	52	90414											
EPB41L5	57669	broad.mit.edu	37	chr2	120844732	120844732	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtaatttggcttttattctCttattatattataggccgaa	6	5	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120844732	T	T	120844732	1	4	87	0	1	0	0	0	0	0	0	0	5199	928	32	4		4	EPB41L5	2	120844732	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	2141673	120844732	122354641	53	90415											
PTPN18	26469	broad.mit.edu	37	chr2	131130573	131130573	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgctttgagtgaacccAggagtctggggttgatgggg	17	6	1	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131130573	T	T	131130573	1	4	87	0	1	0	0	0	0	0	0	0	12890	203	7	5		5	PTPN18	2	131130573	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	10285841	131130573	112068800	54	90416											
LRP1B	53353	broad.mit.edu	37	chr2	141213882	141213882	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctaatagctaaggtcccAttttaatgagatgttatagt	7	6	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141213882	G	G	141213882	1	3	87	0	1	0	0	0	0	0	0	0	9042	232	8	5		5	LRP1B	2	141213882	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	10083309	141213882	101985491	55	90417											
LRP1B	53353	broad.mit.edu	37	chr2	141987096	141987096	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttattgaaagctattttcTatacttttaataaattcata	3	4	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141987096	A	A	141987096	1	1	87	0	1	0	0	0	0	0	0	0	9042	1537	53	5		5	LRP1B	2	141987096	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	773214	141987096	101212277	56	90418											
ABCB11	8647	broad.mit.edu	37	chr2	169814772	169814772	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatgtctatgggatatgGttgtttgttattttttgagg	11	2	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169814772	C	C	169814772	1	2	87	0	1	0	0	0	0	0	0	0	42	1276	44	4		4	ABCB11	2	169814772	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	27827676	169814772	73384601	57	90419											
ATF2	1386	broad.mit.edu	37	chr2	175962264	175962264	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatccgctaccatgaccttTgacagtatcaccattggtaa	6	12	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175962264	C	C	175962264	3	2	87	1	0	0	0	0	1	0	0	0	1084	1821	63	5	647	5	ATF2	2	175962264	Missense_Mutation	SNP	T	TCGA-17-Z058-01A-01W-0747-08	6147492	175962264	67237109	58	90420											
TTN	7273	broad.mit.edu	37	chr2	179489062	179489062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaggatcaggttaggtcaGtgtcaatactagaagttgcc	11	6	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179489062	T	T	179489062	1	4	87	0	1	0	0	0	0	0	0	0	16861	1044	36	3		3	TTN	2	179489062	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	3526798	179489062	63710311	59	90421											
COL3A1	1281	broad.mit.edu	37	chr2	189851866	189851866	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggctatcctggaccagctGtacgtacaaatgtttctcag	9	11	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189851866	C	C	189851866	5	2	87	1	0	0	0	0	0	0	1	0	3720	1391	48	4	547	4	COL3A1	2	189851866	Splice_Site	SNP	G	TCGA-17-Z058-01A-01W-0747-08	10362804	189851866	53347507	60	90422											
SPEG	10290	broad.mit.edu	37	chr2	220353792	220353792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggggagtctgtgtggcaCcctgtgagctcaggcatccc	14	11	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220353792	A	A	220353792	3	1	87	1	0	0	0	0	1	0	0	0	15154	506	18	3	8316	3	SPEG	2	220353792	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	30501926	220353792	22845581	61	90423											
COL4A3	1285	broad.mit.edu	37	chr2	228175633	228175633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattcctacagtttctggCtggcttcattaaacccagaa	6	11	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228175633	A	A	228175633	3	1	87	1	0	0	0	0	1	0	0	0	3723	796	28	3	5099	3	COL4A3	2	228175633	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	7821841	228175633	15023740	62	90424											
HDAC4	9759	broad.mit.edu	37	chr2	239975263	239975263	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagagaacgccccgctgtGgaggttgtgcgctgcaggca	15	11	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239975263	A	A	239975263	2	1	87	1	0	0	0	0	0	0	0	1	7076	1335	47	4		4	HDAC4	2	239975263	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	11799630	239975263	3224110	63	90425											
FGD5	152273	broad.mit.edu	37	chr3	14964411	14964411	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccttgccggaaaagtaggGgacacgcacagctccatgat	12	11	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14964411	T	T	14964411	1	4	87	0	1	0	0	0	0	0	0	0	5893	1247	43	2		2	FGD5	3	14964411	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08		14964411	183058019	64	90426											
ALS2CL	259173	broad.mit.edu	37	chr3	46719710	46719710	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggatggaaacacagacacatCcccagataggcccagagcca	10	13	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46719710	G	G	46719710	1	3	87	0	1	0	0	0	0	0	0	0	551	870	30	4		4	ALS2CL	3	46719710	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	31755299	46719710	151302720	65	90427											
CACNA1D	776	broad.mit.edu	37	chr3	53779849	53779849	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtctattttatacccaGgggaagttctatcgctgtac	9	10	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53779849	T	T	53779849	5	4	87	1	0	0	0	0	0	0	1	0	2567	1014	35	2	3384	2	CACNA1D	3	53779849	Splice_Site	SNP	G	TCGA-17-Z058-01A-01W-0747-08	7060139	53779849	144242581	66	90428											
FAM19A1	407738	broad.mit.edu	37	chr3	68194137	68194137	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaagatgcctaggcccGgagaccggccgtgaagatgc	14	12	1	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68194137	A	A	68194137	1	1	87	0	1	0	0	0	0	0	0	0	5578	1131	39	4		4	FAM19A1	3	68194137	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	14414288	68194137	129828293	67	90429											
EPHA6	285220	broad.mit.edu	37	chr3	97200126	97200126	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgaataaataatgaatgtTttcataaagagtatccgtct	6	4	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97200126	C	C	97200126	1	2	87	0	1	0	0	0	0	0	0	0	5213	1856	64	5		5	EPHA6	3	97200126	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	29005989	97200126	100822304	68	90430											
LSAMP	4045	broad.mit.edu	37	chr3	115529219	115529219	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagccacagtggtacgGccagactgatggatccattt	11	12	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115529219	A	A	115529219	3	1	87	1	0	0	0	0	1	0	0	0	9135	1203	42	4	58	4	LSAMP	3	115529219	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	18329093	115529219	82493211	69	90431											
HGD	3081	broad.mit.edu	37	chr3	120393541	120393541	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtattttcccagctctgTgcagctttccttcaccttct	6	13	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120393541	G	G	120393541	1	3	87	0	1	0	0	0	0	0	0	0	7151	1711	59	5		5	HGD	3	120393541	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	4864322	120393541	77628889	70	90432											
KALRN	8997	broad.mit.edu	37	chr3	123953741	123953741	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaatcatgacagaataAgacaggaagacctgcggaaa	11	8	1	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123953741	G	G	123953741	3	3	87	1	0	0	0	0	1	0	0	0	8045	64	3	5	218	5	KALRN	3	123953741	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	3560200	123953741	74068689	71	90433											
KBTBD12	166348	broad.mit.edu	37	chr3	127641881	127641881	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacacttaaagaagacttaGttggaaactttggagagtag	10	5	0	3	rs143738485	by1000genomes	TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127641881	T	T	127641881	1	4	87	0	1	0	0	0	0	0	0	0	8061	1044	36	3		3	KBTBD12	3	127641881	5'Flank	SNP	G	TCGA-17-Z058-01A-01W-0747-08	3688140	127641881	70380549	72	90434											
H1FX	8971	broad.mit.edu	37	chr3	129034608	129034608	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaccagctggctgtacttGcccggctggttcttcttctt	9	14	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129034608	T	T	129034608	2	4	87	1	0	0	0	0	0	0	0	1	6988	1306	46	3		3	H1FX	3	129034608	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1392727	129034608	68987822	73	90435											
CCDC39	339829	broad.mit.edu	37	chr3	180381825	180381825	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcctattaagttttaccaTatgaaggacctaaaatcaaa	5	7	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180381825	C	C	180381825	1	2	87	0	1	0	0	0	0	0	0	0	2838	1421	49	5		5	CCDC39	3	180381825	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	51347217	180381825	17640605	74	90436											
CHRD	8646	broad.mit.edu	37	chr3	184104737	184104737	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgccctggtgagttcccCgcaggggagtggagggagga	19	8	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184104737	T	T	184104737	1	4	87	0	1	0	0	0	0	0	0	0	3403	667	23	4		4	CHRD	3	184104737	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3722912	184104737	13917693	75	90437											
MAEA	10296	broad.mit.edu	37	chr4	1305800	1305800	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgaacaaacgctttcgcGccgctcagaagaacattgac	9	13	1	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1305800	A	A	1305800	3	1	87	1	0	0	0	0	1	0	0	0	9241	1087	38	4	109	4	MAEA	4	1305800	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08		1305800	189848476	76	90438											
CYTL1	54360	broad.mit.edu	37	chr4	5020942	5020942	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttttctctctctctctctTttttttttcgtgtaaaggca	4	11	4	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5020942	C	C	5020942	1	2	87	0	1	0	0	0	0	0	0	0	4241	1856	64	5		5	CYTL1	4	5020942	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	3715142	5020942	186133334	77	90439											
CWH43	80157	broad.mit.edu	37	chr4	49030521	49030521	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttcatggattaaatgtggGaaaatgtctaaggaaattcc	9	4	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49030521	T	T	49030521	1	4	87	0	1	0	0	0	0	0	0	0	4106	1189	41	3		3	CWH43	4	49030521	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	44009579	49030521	142123755	78	90440											
LPHN3	23284	broad.mit.edu	37	chr4	62897035	62897035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaagtacttacaccacctGtcttacattttctgtcaata	3	10	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62897035	T	T	62897035	1	4	87	0	1	0	0	0	0	0	0	0	9004	1392	48	3		3	LPHN3	4	62897035	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	13866514	62897035	128257241	79	90441											
CENPC1	1060	broad.mit.edu	37	chr4	68409938	68409938	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaagtaaatcatcaatTtggtttctttaagatagagt	7	3	3	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68409938	G	G	68409938	1	3	87	0	1	0	0	0	0	0	0	0	3259	1856	64	5		5	CENPC1	4	68409938	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	5512903	68409938	122744338	80	90442											
CDKL2	8999	broad.mit.edu	37	chr4	76522457	76522457	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattaataaggttaatgatCtgaagagaatgaaaatttac	7	2	1	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76522457	G	G	76522457	1	3	87	0	1	0	0	0	0	0	0	0	3184	928	32	4		4	CDKL2	4	76522457	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	8112519	76522457	114631819	81	90443											
NAA11	84779	broad.mit.edu	37	chr4	80246396	80246396	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacgttggtgctctccacAgactccttaggttctttgct	10	11	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80246396	G	G	80246396	2	3	87	1	0	0	0	0	0	0	0	1	10211	175	7	5		5	NAA11	4	80246396	Silent	SNP	A	TCGA-17-Z058-01A-01W-0747-08	3723939	80246396	110907880	82	90444											
C4orf22	255119	broad.mit.edu	37	chr4	81309712	81309712	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttacacttcccacagagAaagacatcctcatcatccaa	3	14	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81309712	G	G	81309712	1	3	87	0	1	0	0	0	0	0	0	0	2278	261	9	5		5	C4orf22	4	81309712	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	1063316	81309712	109844564	83	90445											
DAPP1	27071	broad.mit.edu	37	chr4	100784205	100784205	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttactctgcacaggaatgaActgaaatacttcaaagacca	6	9	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100784205	T	T	100784205	3	4	87	1	0	0	0	0	1	0	0	0	4272	40	2	5	598	5	DAPP1	4	100784205	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	19474493	100784205	90370071	84	90446											
CENPE	1062	broad.mit.edu	37	chr4	104065387	104065387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggctcgagccaccgcgcCcggcctggaccaattttata	10	16	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104065387	A	A	104065387	1	1	87	0	1	0	0	0	0	0	0	0	3260	638	22	2		2	CENPE	4	104065387	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3281182	104065387	87088889	85	90447											
C4orf41	60684	broad.mit.edu	37	chr4	184598758	184598758	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtttcaatattaaattAtctttttaaaatttgaacat	3	3	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184598758	G	G	184598758	1	3	87	0	1	0	0	0	0	0	0	0	2293	464	16	5		5	C4orf41	4	184598758	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	80533371	184598758	6555518	86	90448											
SNX25	83891	broad.mit.edu	37	chr4	186283980	186283980	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcattctcacatactagtcAtctcccttgacttttttttt	2	12	4	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186283980	G	G	186283980	1	3	87	0	1	0	0	0	0	0	0	0	15010	232	8	5		5	SNX25	4	186283980	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	1685222	186283980	4870296	87	90449											
PAPD7	11044	broad.mit.edu	37	chr5	6750988	6750988	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgatgaaattacttgaAggaagcctgggtaggtttgg	15	3	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6750988	T	T	6750988	1	4	87	0	1	0	0	0	0	0	0	0	11520	87	3	5		5	PAPD7	5	6750988	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08		6750988	174164272	88	90450											
ADCY2	108	broad.mit.edu	37	chr5	7802597	7802597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctttggcataatttctGgcagatggcattaaagcctt	9	8	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7802597	T	T	7802597	1	4	87	0	1	0	0	0	0	0	0	0	294	1363	47	2		2	ADCY2	5	7802597	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1051609	7802597	173112663	89	90451											
FAM105A	54491	broad.mit.edu	37	chr5	14602250	14602250	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattcactttattttcttgtCcagtggaattaataaacaac	4	7	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14602250	A	A	14602250	1	1	87	0	1	0	0	0	0	0	0	0	5433	870	30	3		3	FAM105A	5	14602250	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	6799653	14602250	166313010	90	90452											
CDH6	1004	broad.mit.edu	37	chr5	31297611	31297611	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaataatcaatgtgattGgattttcttgcatacatcca	5	6	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31297611	A	A	31297611	1	1	87	0	1	0	0	0	0	0	0	0	3144	1363	47	4		4	CDH6	5	31297611	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	16695361	31297611	149617649	91	90453											
MTMR12	54545	broad.mit.edu	37	chr5	32229893	32229893	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacaaacaggtcacacatcCcctaggtccacgaactcatc	5	16	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32229893	T	T	32229893	2	4	87	1	0	0	0	0	0	0	0	1	10035	610	22	4		4	MTMR12	5	32229893	Silent	SNP	C	TCGA-17-Z058-01A-01W-0747-08	932282	32229893	148685367	92	90454											
LIFR	3977	broad.mit.edu	37	chr5	38512142	38512142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttagaattaaaagacaCaatagattccatacaatcat	3	8	1	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38512142	A	A	38512142	1	1	87	0	1	0	0	0	0	0	0	0	8852	493	17	3		3	LIFR	5	38512142	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	6282249	38512142	142403118	93	90455											
HCN1	348980	broad.mit.edu	37	chr5	45462139	45462139	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatataaaatcaattcttAtaatcaattttttagaaaaa	1	3	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45462139	T	T	45462139	1	4	87	0	1	0	0	0	0	0	0	0	7062	464	16	5		5	HCN1	5	45462139	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	6949997	45462139	135453121	94	90456											
SLIT3	6586	broad.mit.edu	37	chr5	168151488	168151488	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggtggtttccttccaggtAcctgaaagaggtgtggagag	15	6	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168151488	G	G	168151488	3	3	87	1	0	0	0	0	1	0	0	0	14855	405	14	5	2363	5	SLIT3	5	168151488	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	122689349	168151488	12763772	95	90457											
DUSP22	56940	broad.mit.edu	37	chr6	348907	348907	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggtggagcagttttccgGcactggctccgctgacctac	14	13	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348907	T	T	348907	1	4	87	0	1	0	0	0	0	0	0	0	4861	1218	42	3		3	DUSP22	6	348907	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08		348907	170766160	96	90458											
MCM3	4172	broad.mit.edu	37	chr6	52137266	52137266	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccctggagccacacacagTgaattccatctccctgccac	6	18	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52137266	A	A	52137266	1	1	87	0	1	0	0	0	0	0	0	0	9480	1711	59	5		5	MCM3	6	52137266	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	51788359	52137266	118977801	97	90459											
MCM3	4172	broad.mit.edu	37	chr6	52141773	52141773	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggacccaactaacctatCagctgtatcttcagaacaca	5	13	4	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52141773	A	A	52141773	1	1	87	0	1	0	0	0	0	0	0	0	9480	841	29	3		3	MCM3	6	52141773	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	4507	52141773	118973294	98	90460											
RAB23	51715	broad.mit.edu	37	chr6	57055437	57055437	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagtgattgccactgacaCgcctgagttacctgttgcat	10	10	0	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57055437	T	T	57055437	1	4	87	0	1	0	0	0	0	0	0	0	13018	551	19	4		4	RAB23	6	57055437	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	4913664	57055437	114059630	99	90461											
COL9A1	1297	broad.mit.edu	37	chr6	71004359	71004359	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggccattttagatgccaGacctatagaaaagctacagt	9	8	0	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71004359	A	A	71004359	1	1	87	0	1	0	0	0	0	0	0	0	3739	957	33	4		4	COL9A1	6	71004359	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	13948922	71004359	100110708	100	90462											
KIAA0776	23376	broad.mit.edu	37	chr6	96997261	96997261	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atactcagtacattttaataAactaaatatatttgtcttat	2	5	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96997261	T	T	96997261	1	4	87	0	1	0	0	0	0	0	0	0	8263	29	1	5		5	KIAA0776	6	96997261	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	25992902	96997261	74117806	101	90463											
SIM1	6492	broad.mit.edu	37	chr6	100868896	100868896	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaatggattcatgcatactCtcatcaggaatgatagtaat	8	6	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100868896	A	A	100868896	1	1	87	0	1	0	0	0	0	0	0	0	14436	928	32	3		3	SIM1	6	100868896	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3871635	100868896	70246171	102	90464											
FOXO3	2309	broad.mit.edu	37	chr6	108985148	108985148	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaactgccacggctgactgAtatggcaggcaccatgaatc	12	11	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108985148	T	T	108985148	3	4	87	1	0	0	0	0	1	0	0	0	6084	333	12	5	1118	5	FOXO3	6	108985148	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	8116252	108985148	62129919	103	90465											
RFX6	222546	broad.mit.edu	37	chr6	117246484	117246484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaacctcacttcccatGggaaacattgcttagtagtt	7	12	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117246484	T	T	117246484	1	4	87	0	1	0	0	0	0	0	0	0	13375	1363	47	2		2	RFX6	6	117246484	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8261336	117246484	53868583	104	90466											
NKAIN2	154215	broad.mit.edu	37	chr6	124979266	124979266	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgggaaagtcaaagcaagtCagtcccaagtaagctgacta	10	8	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124979266	A	A	124979266	1	1	87	0	1	0	0	0	0	0	0	0	10531	841	29	3		3	NKAIN2	6	124979266	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	7732782	124979266	46135801	105	90467											
UTRN	7402	broad.mit.edu	37	chr6	144613130	144613130	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatttgcattgttcttgcaAgaacttcttggaggtgaagt	11	5	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144613130	G	G	144613130	1	3	87	0	1	0	0	0	0	0	0	0	17230	87	3	5		5	UTRN	6	144613130	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	19633864	144613130	26501937	106	90468											
SYNE1	23345	broad.mit.edu	37	chr6	152847442	152847442	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatatactttaattctttatTttggattgagttgccaattg	6	4	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152847442	A	A	152847442	1	1	87	0	1	0	0	0	0	0	0	0	15564	1856	64	5		5	SYNE1	6	152847442	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	8234312	152847442	18267625	107	90469											
FNDC1	84624	broad.mit.edu	37	chr6	159653451	159653451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcatcgtccttccctgcCtgccagcttgaatgacaacg	7	16	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159653451	A	A	159653451	3	1	87	1	0	0	0	0	1	0	0	0	6026	681	24	2	1949	2	FNDC1	6	159653451	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	6806009	159653451	11461616	108	90470											
SLC22A2	6582	broad.mit.edu	37	chr6	160677584	160677584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcaagcaggggcaggtgCatccaagtgttctccaaacc	11	11	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160677584	A	A	160677584	1	1	87	0	1	0	0	0	0	0	0	0	14564	725	25	3		3	SLC22A2	6	160677584	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1024133	160677584	10437483	109	90471											
UNCX	340260	broad.mit.edu	37	chr7	1273269	1273269	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgttcaacgagagccactatCccgacgtgttcatgcgcgag	11	13	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1273269	T	T	1273269	3	4	87	1	0	0	0	0	1	0	0	0	17124	855	30	4	394	4	UNCX	7	1273269	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08		1273269	157865394	110	90472											
CARD11	84433	broad.mit.edu	37	chr7	2954949	2954949	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcggactccccgagatgaTgcggacccgctcgttgctgt	13	13	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2954949	C	C	2954949	3	2	87	1	0	0	0	0	1	0	0	0	2671	1464	51	5	723	5	CARD11	7	2954949	Missense_Mutation	SNP	T	TCGA-17-Z058-01A-01W-0747-08	1681680	2954949	156183714	111	90473											
SCIN	85477	broad.mit.edu	37	chr7	12684300	12684300	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccatccacctcggctttaCggctgctctaacaaaactgg	8	14	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12684300	T	T	12684300	2	4	87	1	0	0	0	0	0	0	0	1	14018	547	19	4		4	SCIN	7	12684300	Silent	SNP	C	TCGA-17-Z058-01A-01W-0747-08	9729351	12684300	146454363	112	90474											
ABCB5	340273	broad.mit.edu	37	chr7	20795032	20795032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcaaactggtgatcacaGgtctttctctcttccaggtg	8	11	5	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20795032	T	T	20795032	1	4	87	0	1	0	0	0	0	0	0	0	44	1015	35	2		2	ABCB5	7	20795032	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8110732	20795032	138343631	113	90475											
VPS41	27072	broad.mit.edu	37	chr7	38785353	38785353	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaacaaataaagaacaCatctccctagaatagctgca	5	10	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38785353	T	T	38785353	1	4	87	0	1	0	0	0	0	0	0	0	17337	493	17	4		4	VPS41	7	38785353	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	17990321	38785353	120353310	114	90476											
PKD1L1	168507	broad.mit.edu	37	chr7	47969029	47969029	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgagctaggatggccacagGaggatgctgagtagggggat	18	6	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47969029	A	A	47969029	3	1	87	1	0	0	0	0	1	0	0	0	12059	1174	41	4	7921	4	PKD1L1	7	47969029	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	9183676	47969029	111169634	115	90477											
RFC2	5982	broad.mit.edu	37	chr7	73153196	73153196	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccccgcccatttccgtcttCagccgccccgcccagttccg	8	22	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73153196	T	T	73153196	1	4	87	0	1	0	0	0	0	0	0	0	13353	841	29	4		4	RFC2	7	73153196	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	25184167	73153196	85985467	116	90478											
CDK14	5218	broad.mit.edu	37	chr7	90546759	90546759	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatgaattaggaatttacAtactaaaatctcacattctg	4	6	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90546759	G	G	90546759	1	3	87	0	1	0	0	0	0	0	0	0	3160	232	8	5		5	CDK14	7	90546759	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	17393563	90546759	68591904	117	90479											
PIK3CG	5294	broad.mit.edu	37	chr7	106524806	106524806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattaactgtaagtgttcaGttcagtggcattacatatgt	8	5	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106524806	T	T	106524806	1	4	87	0	1	0	0	0	0	0	0	0	12011	1044	36	3		3	PIK3CG	7	106524806	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	15978047	106524806	52613857	118	90480											
DOCK4	9732	broad.mit.edu	37	chr7	111372266	111372266	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtctctagcctcagtcgAaagaagggcctttaccttca	8	13	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111372266	C	C	111372266	1	2	87	0	1	0	0	0	0	0	0	0	4729	261	9	5		5	DOCK4	7	111372266	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	4847460	111372266	47766397	119	90481											
NUP205	23165	broad.mit.edu	37	chr7	135315281	135315281	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgacataaattaatagaAtgagtttttttgttactttg	7	3	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135315281	G	G	135315281	1	3	87	0	1	0	0	0	0	0	0	0	10854	116	4	5		5	NUP205	7	135315281	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	23943015	135315281	23823382	120	90482											
CNTNAP2	26047	broad.mit.edu	37	chr7	146536714	146536714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatagagcactgccaagacCaattaagatatgtagaatat	7	6	0	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146536714	A	A	146536714	1	1	87	0	1	0	0	0	0	0	0	0	3679	609	21	2		2	CNTNAP2	7	146536714	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	11221433	146536714	12601949	121	90483											
DPP6	1804	broad.mit.edu	37	chr7	154684364	154684364	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaacaagctccttcccCggggtcatcactcacggcct	10	15	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154684364	T	T	154684364	1	4	87	0	1	0	0	0	0	0	0	0	4770	667	23	4		4	DPP6	7	154684364	3'UTR	SNP	C	TCGA-17-Z058-01A-01W-0747-08	8147650	154684364	4454299	122	90484											
BLK	640	broad.mit.edu	37	chr8	11412989	11412989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggacaattcggcgaagtctgGatgggtgagtgtgtgcacac	16	7	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11412989	T	T	11412989	3	4	87	1	0	0	0	0	1	0	0	0	1450	1183	41	3	794	3	BLK	8	11412989	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08		11412989	134951033	123	90485											
PPP3CC	5533	broad.mit.edu	37	chr8	22396910	22396910	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgggatggctgtgctgccAtcagtgctgttggtttactc	13	10	1	0	rs117132028	by1000genomes	TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22396910	G	G	22396910	1	3	87	0	1	0	0	0	0	0	0	0	12500	232	8	5		5	PPP3CC	8	22396910	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	10983921	22396910	123967112	124	90486											
GOT1L1	137362	broad.mit.edu	37	chr8	37794643	37794643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccccagggcatttgggGgtgaagtgctcctccatgtt	15	11	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37794643	T	T	37794643	1	4	87	0	1	0	0	0	0	0	0	0	6644	1247	43	2		2	GOT1L1	8	37794643	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	15397733	37794643	108569379	125	90487											
TM2D2	83877	broad.mit.edu	37	chr8	38853916	38853916	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcaaagccgcctggcCgcacagaagtaagtaactaa	10	12	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38853916	T	T	38853916	3	4	87	1	0	0	0	0	1	0	0	0	16087	652	23	4	715	4	TM2D2	8	38853916	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1059273	38853916	107510106	126	90488											
ADAM2	2515	broad.mit.edu	37	chr8	39607388	39607388	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtattgatttagcaacaagAattagtatactaacaatgaa	7	4	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39607388	G	G	39607388	1	3	87	0	1	0	0	0	0	0	0	0	241	261	9	5		5	ADAM2	8	39607388	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	753472	39607388	106756634	127	90489											
RP1	6101	broad.mit.edu	37	chr8	55609648	55609648	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcaaggagatgggcacaCctggctatcggggtgaacgc	14	11	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55609648	T	T	55609648	1	4	87	0	1	0	0	0	0	0	0	0	13643	522	18	4		4	RP1	8	55609648	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	16002260	55609648	90754374	128	90490											
ARFGEF1	10565	broad.mit.edu	37	chr8	68165702	68165702	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactctgtttacttgatttTgtagggattgttagttcttt	8	4	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68165702	C	C	68165702	2	2	87	1	0	0	0	0	0	0	0	1	854	1799	63	5		5	ARFGEF1	8	68165702	Silent	SNP	T	TCGA-17-Z058-01A-01W-0747-08	12556054	68165702	78198320	129	90491											
PREX2	80243	broad.mit.edu	37	chr8	69021933	69021933	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggcttagaaaaattcaatCattctctctttagttattgg	7	6	4	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69021933	T	T	69021933	1	4	87	0	1	0	0	0	0	0	0	0	12583	841	29	4		4	PREX2	8	69021933	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	856231	69021933	77342089	130	90492											
C8orf34	116328	broad.mit.edu	37	chr8	69552514	69552514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggatatatattgttttgCttaacaaactaatggcagat	9	4	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69552514	A	A	69552514	1	1	87	0	1	0	0	0	0	0	0	0	2448	812	28	3		3	C8orf34	8	69552514	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	530581	69552514	76811508	131	90493											
TERF1	7013	broad.mit.edu	37	chr8	73951377	73951377	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaaagaaagcagaAgagccactgaaagcagaata	9	5	0	6			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73951377	G	G	73951377	3	3	87	1	0	0	0	0	1	0	0	0	15883	64	3	5	1100	5	TERF1	8	73951377	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	4398863	73951377	72412645	132	90494											
WWP1	11059	broad.mit.edu	37	chr8	87423913	87423913	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaatactgacttcctcaGaaaacaatgaatgtattcct	5	8	1	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87423913	A	A	87423913	3	1	87	1	0	0	0	0	1	0	0	0	17542	943	33	4	897	4	WWP1	8	87423913	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	13472536	87423913	58940109	133	90495											
SLC26A7	115111	broad.mit.edu	37	chr8	92307916	92307916	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagcagtttccttcttGggaggtgtgattcaggtaag	14	7	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92307916	C	C	92307916	3	2	87	1	0	0	0	0	1	0	0	0	14636	1339	47	4	472	4	SLC26A7	8	92307916	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4884003	92307916	54056106	134	90496											
ZFPM2	23414	broad.mit.edu	37	chr8	106814171	106814171	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgatcctgagaatccacttCttcaaacatcttgcatcaat	4	12	4	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106814171	A	A	106814171	3	1	87	1	0	0	0	0	1	0	0	0	17784	913	32	3	1891	3	ZFPM2	8	106814171	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	14506255	106814171	39549851	135	90497											
SLC30A8	169026	broad.mit.edu	37	chr8	118165120	118165120	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcacccatgatggttagCatgtctgtgaatctagctgc	9	9	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118165120	T	T	118165120	1	4	87	0	1	0	0	0	0	0	0	0	14675	725	25	4		4	SLC30A8	8	118165120	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	11350949	118165120	28198902	136	90498											
GSDMC	56169	broad.mit.edu	37	chr8	130761108	130761108	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagagctttgggatccagcgGaccaggagtaacatgctggt	14	8	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130761108	A	A	130761108	1	1	87	0	1	0	0	0	0	0	0	0	6884	1189	41	4		4	GSDMC	8	130761108	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	12595988	130761108	15602914	137	90499											
PTK2	5747	broad.mit.edu	37	chr8	141745226	141745226	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttaaaagtaattgcatTtgaacgaaaaatagttcggc	7	4	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141745226	C	C	141745226	1	2	87	0	1	0	0	0	0	0	0	0	12868	1856	64	5		5	PTK2	8	141745226	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	10984118	141745226	4618796	138	90500											
ZNF7	7553	broad.mit.edu	37	chr8	146066582	146066582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaccacttttgagaactGtcaaaggctctgccttctct	7	11	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146066582	A	A	146066582	1	1	87	0	1	0	0	0	0	0	0	0	18229	1392	48	4		4	ZNF7	8	146066582	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4321356	146066582	297440	139	90501											
KDM4C	23081	broad.mit.edu	37	chr9	6748983	6748983	+	Intron	SNP	G	T	T													cctggccactgtatgccatgGtggaatttcacaaagagcac							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6748983	T	T	6748983	1	4	87	0	1	0	0	0	0	0	0	0	8200	1276	44	3		3	KDM4C	9	6748983	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08		6748983	134464448	140	90502	406	2									
KDM4C	23081	broad.mit.edu	37	chr9	6748985	6748985	+	Intron	SNP	G	A	A													tggccactgtatgccatggtGgaatttcacaaagagcacac							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6748985	A	A	6748985	1	1	87	0	1	0	0	0	0	0	0	0	8200	1363	47	4		4	KDM4C	9	6748985	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	2	6748985	134464446	141	90503	406	2									
PLAA	9373	broad.mit.edu	37	chr9	26913778	26913778	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttactatataaaaagttcTcaagcaagaaaatgacacaa	4	6	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26913778	C	C	26913778	1	2	87	0	1	0	0	0	0	0	0	0	12106	1566	54	5		5	PLAA	9	26913778	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	20164793	26913778	114299653	142	90504											
CNTFR	1271	broad.mit.edu	37	chr9	34557721	34557721	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgagacccaggcactgttaCgaacatcaagggtcaggtgg	14	9	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34557721	G	G	34557721	1	3	87	0	1	0	0	0	0	0	0	0	3670	551	19	4		4	CNTFR	9	34557721	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	7643943	34557721	106655710	143	90505											
FLJ44082	389762	broad.mit.edu	37	chr9	84562590	84562590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctaggaactcatatgatgCatctgtcagggaatgattca	9	8	4	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84562590	A	A	84562590	3	1	87	1	0	0	0	0	1	0	0	0	5988	710	25	3	2436	3	FLJ44082	9	84562590	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	50004869	84562590	56650841	144	90506											
OMD	4958	broad.mit.edu	37	chr9	95177381	95177381	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtttacttagatttactAtattaagtataggttttgtg	7	3	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95177381	G	G	95177381	1	3	87	0	1	0	0	0	0	0	0	0	10959	464	16	5		5	OMD	9	95177381	3'UTR	SNP	A	TCGA-17-Z058-01A-01W-0747-08	10614791	95177381	46036050	145	90507											
ANP32B	10541	broad.mit.edu	37	chr9	100760681	100760681	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcctgttaattatttGgatttaaacaaaatgaacat	4	7	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100760681	A	A	100760681	1	1	87	0	1	0	0	0	0	0	0	0	706	1363	47	4		4	ANP32B	9	100760681	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	5583300	100760681	40452750	146	90508											
GRIN3A	116443	broad.mit.edu	37	chr9	104340213	104340213	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgagatgtaacagtataTgtagtcgttacaaaccttgg	9	6	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104340213	C	C	104340213	1	2	87	0	1	0	0	0	0	0	0	0	6849	1479	51	5		5	GRIN3A	9	104340213	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	3579532	104340213	36873218	147	90509											
SVEP1	79987	broad.mit.edu	37	chr9	113265605	113265605	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaagacaattttcttttcTtaaaatagcaaacgacacat	4	8	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113265605	A	A	113265605	1	1	87	0	1	0	0	0	0	0	0	0	15538	1624	56	5		5	SVEP1	9	113265605	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	8925392	113265605	27947826	148	90510											
PAEP	5047	broad.mit.edu	37	chr9	138454761	138454761	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgtccccaggccccaaGggctggctcagtgctggcat	14	13	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138454761	A	A	138454761	1	1	87	0	1	0	0	0	0	0	0	0	11476	1015	35	4		4	PAEP	9	138454761	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	25189156	138454761	2758670	149	90511											
CUBN	8029	broad.mit.edu	37	chr10	16943248	16943248	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagccttctctaatcactTgcttaataaaagagctccat	4	11	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16943248	A	A	16943248	1	1	87	0	1	0	0	0	0	0	0	0	4084	1827	63	5		5	CUBN	10	16943248	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08		16943248	118591499	150	90512											
PLXDC2	84898	broad.mit.edu	37	chr10	20356967	20356967	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtacgaccgaggactcagGttttaaaagagaactacaat	9	7	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20356967	A	A	20356967	1	1	87	0	1	0	0	0	0	0	0	0	12213	1276	44	4		4	PLXDC2	10	20356967	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	3413719	20356967	115177780	151	90513											
CCDC7	221016	broad.mit.edu	37	chr10	32860802	32860802	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagatcactgcccaaagcGgaagactgattgaaaagagg	11	9	1	5			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32860802	A	A	32860802	3	1	87	1	0	0	0	0	1	0	0	0	2870	1117	39	4	1497	4	CCDC7	10	32860802	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	12503835	32860802	102673945	152	90514											
ZNF32	7580	broad.mit.edu	37	chr10	44139741	44139741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgaaggcttttccacaCtgatcacatctatagggctt	8	10	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44139741	A	A	44139741	3	1	87	1	0	0	0	0	1	0	0	0	17964	564	20	3	246	3	ZNF32	10	44139741	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	11278939	44139741	91395006	153	90515											
DDX21	9188	broad.mit.edu	37	chr10	70728878	70728878	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacggcaataactgtggagGtaaattatttacttagttgc	9	5	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70728878	T	T	70728878	5	4	87	1	0	0	0	0	0	0	1	0	4382	1275	44	3	1263	3	DDX21	10	70728878	Splice_Site	SNP	G	TCGA-17-Z058-01A-01W-0747-08	26589137	70728878	64805869	154	90516											
NRG3	10718	broad.mit.edu	37	chr10	84733364	84733364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagagatggttggggcaGgggaggtgaatactcaatgt	17	5	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84733364	T	T	84733364	1	4	87	0	1	0	0	0	0	0	0	0	10744	1015	35	2		2	NRG3	10	84733364	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	14004486	84733364	50801383	155	90517											
TLL2	7093	broad.mit.edu	37	chr10	98172801	98172801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatttcacctttctataCtgcctagcacctcctaccag	3	17	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98172801	A	A	98172801	1	1	87	0	1	0	0	0	0	0	0	0	16069	580	20	3		3	TLL2	10	98172801	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	13439437	98172801	37361946	156	90518											
TLL2	7093	broad.mit.edu	37	chr10	98180887	98180887	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaggaggcagaggaaggAgaaggagggcccataacaac	16	6	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98180887	G	G	98180887	1	3	87	0	1	0	0	0	0	0	0	0	16069	319	11	5		5	TLL2	10	98180887	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	8086	98180887	37353860	157	90519											
HPS1	3257	broad.mit.edu	37	chr10	100189703	100189703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctggctccctccaccCcttctgcctcccagcgcttc	6	22	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100189703	T	T	100189703	1	4	87	0	1	0	0	0	0	0	0	0	7406	638	22	4		4	HPS1	10	100189703	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	2008816	100189703	35345044	158	90520											
HIF1AN	55662	broad.mit.edu	37	chr10	102295897	102295897	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttattgagaatgaggtggGgggcggggccgcgtctaaag	19	6	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102295897	C	C	102295897	1	2	87	0	1	0	0	0	0	0	0	0	7171	1247	43	4		4	HIF1AN	10	102295897	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	2106194	102295897	33238850	159	90521											
PTDSS2	81490	broad.mit.edu	37	chr11	460269	460269	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaggaaacacctcaggacAcggcctacaacaccaagagg	11	12	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	460269	T	T	460269	3	4	87	1	0	0	0	0	1	0	0	0	12843	159	6	5	271	5	PTDSS2	11	460269	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08		460269	134546247	160	90522											
SCUBE2	57758	broad.mit.edu	37	chr11	9077578	9077578	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacacacagagtaaaaaacaTtatctatccattttcctcac	2	11	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9077578	G	G	9077578	1	3	87	0	1	0	0	0	0	0	0	0	14058	1508	52	5		5	SCUBE2	11	9077578	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	8617309	9077578	125928938	161	90523											
PLEKHA7	144100	broad.mit.edu	37	chr11	16872920	16872920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcttccagaacttcagCcaagttgtttcctccccttg	6	15	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16872920	A	A	16872920	1	1	87	0	1	0	0	0	0	0	0	0	12156	754	26	3		3	PLEKHA7	11	16872920	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	7795342	16872920	118133596	162	90524											
USH1C	10083	broad.mit.edu	37	chr11	17517186	17517186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaggagctttcggaccGgttgggggctttcagctacg	14	10	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17517186	T	T	17517186	1	4	87	0	1	0	0	0	0	0	0	0	17160	1116	39	1		1	USH1C	11	17517186	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	644266	17517186	117489330	163	90525											
ABTB2	25841	broad.mit.edu	37	chr11	34184379	34184379	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcccagggatgaatgaaggtGagggctgaagtcccacaggc	16	9	0	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34184379	C	C	34184379	1	2	87	0	1	0	0	0	0	0	0	0	103	1305	45	4		4	ABTB2	11	34184379	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	16667193	34184379	100822137	164	90526											
TRIM48	79097	broad.mit.edu	37	chr11	55035158	55035158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtttttgactattcacatGtataagtattttcctcatgg	7	6	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55035158	A	A	55035158	1	1	87	0	1	0	0	0	0	0	0	0	16648	1392	48	4		4	TRIM48	11	55035158	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	20850779	55035158	79971358	165	90527											
PRG3	10394	broad.mit.edu	37	chr11	57146264	57146264	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatagagacaaggttgcctcCgtagcatctgctgcagacat	11	10	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57146264	T	T	57146264	3	4	87	1	0	0	0	0	1	0	0	0	12586	661	23	4	292	4	PRG3	11	57146264	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	2111106	57146264	77860252	166	90528											
DAGLA	747	broad.mit.edu	37	chr11	61491152	61491152	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctcccagactgcatgccaAcctcgtgtgagccgtgggca	12	15	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61491152	T	T	61491152	1	4	87	0	1	0	0	0	0	0	0	0	4259	58	2	5		5	DAGLA	11	61491152	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	4344888	61491152	73515364	167	90529											
ATG2A	23130	broad.mit.edu	37	chr11	64670071	64670071	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattacgtactggagcaggtTgaccagcagggcacaggagt	14	9	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64670071	A	A	64670071	3	1	87	1	0	0	0	0	1	0	0	0	1097	1812	63	5	2182	5	ATG2A	11	64670071	Missense_Mutation	SNP	T	TCGA-17-Z058-01A-01W-0747-08	3178919	64670071	70336445	168	90530											
POLA2	23649	broad.mit.edu	37	chr11	65062203	65062203	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagccaagaaaatcaaggGgctgcttaacggtcttgacc	11	10	2	2	rs41555421		TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65062203	A	A	65062203	1	1	87	0	1	0	0	0	0	0	0	0	12283	1247	43	4		4	POLA2	11	65062203	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	392132	65062203	69944313	169	90531											
UVRAG	7405	broad.mit.edu	37	chr11	75622817	75622817	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaatttattttacattcCctcacctgaaaggttaggct	5	10	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75622817	T	T	75622817	1	4	87	0	1	0	0	0	0	0	0	0	17235	638	22	4		4	UVRAG	11	75622817	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	10560614	75622817	59383699	170	90532											
HEPHL1	341208	broad.mit.edu	37	chr11	93819389	93819389	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccatctcaggtgaccagaTttctaccttcaggctcatcc	7	14	4	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93819389	C	C	93819389	1	2	87	0	1	0	0	0	0	0	0	0	7122	1508	52	5		5	HEPHL1	11	93819389	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	18196572	93819389	41187127	171	90533											
KIAA1377	57562	broad.mit.edu	37	chr11	101868321	101868321	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgcttgtttcttctttctGatttccaggagaagagagaa	9	7	3	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101868321	T	T	101868321	1	4	87	0	1	0	0	0	0	0	0	0	8297	1305	45	3		3	KIAA1377	11	101868321	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8048932	101868321	33138195	172	90534											
AASDHPPT	60496	broad.mit.edu	37	chr11	105948647	105948647	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggtcttttttggtatttaGagcctaggaagcagatcttg	11	6	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105948647	T	T	105948647	1	4	87	0	1	0	0	0	0	0	0	0	23	957	33	3		3	AASDHPPT	11	105948647	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4080326	105948647	29057869	173	90535											
JAM3	83700	broad.mit.edu	37	chr11	134018274	134018274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttatggtgtcctatatGttctaggctagaaggattgt	13	4	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134018274	T	T	134018274	1	4	87	0	1	0	0	0	0	0	0	0	8014	1392	48	3		3	JAM3	11	134018274	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	28069627	134018274	988242	174	90536											
ZNF384	171017	broad.mit.edu	37	chr12	6781442	6781442	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccccccgcatgcgggttgTtgtgtgtgtccggggcgggg	19	12	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6781442	C	C	6781442	1	2	87	0	1	0	0	0	0	0	0	0	18001	1740	60	5		5	ZNF384	12	6781442	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08		6781442	127070453	175	90537											
GUCY2C	2984	broad.mit.edu	37	chr12	14839229	14839229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggacaggaaagaagtagCaaggggaaggctcccagagg	17	6	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14839229	A	A	14839229	1	1	87	0	1	0	0	0	0	0	0	0	6961	725	25	3		3	GUCY2C	12	14839229	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	8057787	14839229	119012666	176	90538											
ITPR2	3709	broad.mit.edu	37	chr12	26571907	26571907	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgcttaaaaaaaaaaatCaaaggaagaggcataagaag	8	4	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26571907	T	T	26571907	1	4	87	0	1	0	0	0	0	0	0	0	7991	841	29	4		4	ITPR2	12	26571907	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	11732678	26571907	107279988	177	90539											
ITPR2	3709	broad.mit.edu	37	chr12	26835345	26835345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacccatttagatcagctaCctaagcaactggcagacatg	7	12	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26835345	T	T	26835345	1	4	87	0	1	0	0	0	0	0	0	0	7991	522	18	4		4	ITPR2	12	26835345	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	263438	26835345	107016550	178	90540											
ARNTL2	56938	broad.mit.edu	37	chr12	27540142	27540143	+	Intron	INS	-	T	T													caatattttaaaatattcacINStttttttttaaatcctagac							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27540143	T	T	27540142	6	5	87	0	1	1	1	0	0	0	0	0	972	580	20	0		0	ARNTL2	12	27540142	Intron	INS	-	TCGA-17-Z058-01A-01W-0747-08	704797	27540142	106311753	179	90541											
DNM1L	10059	broad.mit.edu	37	chr12	32871857	32871857	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttggtattgctaaagaaTccgttgccctaaagggagaa	10	7	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32871857	A	A	32871857	1	1	87	0	1	0	0	0	0	0	0	0	4711	1450	50	5		5	DNM1L	12	32871857	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	5331715	32871857	100980038	180	90542											
TWF1	5756	broad.mit.edu	37	chr12	44191757	44191757	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccaacctataattaaaatTatttttcacatttgtttacg	3	8	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44191757	A	A	44191757	1	1	87	0	1	0	0	0	0	0	0	0	16907	1769	61	5		5	TWF1	12	44191757	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	11319900	44191757	89660138	181	90543											
CCNT1	904	broad.mit.edu	37	chr12	49089726	49089726	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcaagtcacctttggccaGctatgtgacagatcaacagc	8	11	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49089726	A	A	49089726	1	1	87	0	1	0	0	0	0	0	0	0	2964	986	34	4		4	CCNT1	12	49089726	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4897969	49089726	84762169	182	90544											
ADCY6	112	broad.mit.edu	37	chr12	49165393	49165393	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgatgactctgggtcccaTcaaatctctctctctcttcc	5	16	5	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49165393	A	A	49165393	1	1	87	0	1	0	0	0	0	0	0	0	298	1450	50	5		5	ADCY6	12	49165393	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	75667	49165393	84686502	183	90545											
MFSD5	84975	broad.mit.edu	37	chr12	53647283	53647284	+	Frame_Shift_Ins	INS	-	G	G													ggccttggcccttcgaaactINSggggggagaactatgaccgg							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53647284	G	G	53647283	7	5	87	1	0	1	1	0	0	0	0	0	9627	1580	55	0	991	0	MFSD5	12	53647283	Frame_Shift_Ins	INS	-	TCGA-17-Z058-01A-01W-0747-08	4481890	53647283	80204612	184	90546											
COPZ1	22818	broad.mit.edu	37	chr12	54743623	54743623	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actccctacccctacttccaActcctttctcagttacctgt	2	18	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54743623	T	T	54743623	1	4	87	0	1	0	0	0	0	0	0	0	3773	58	2	5		5	COPZ1	12	54743623	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	1096340	54743623	79108272	185	90547											
FAM19A2	338811	broad.mit.edu	37	chr12	62273881	62273881	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctggacatggacaacatcAtcactgaggtcaaggcccag	10	13	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62273881	T	T	62273881	1	4	87	0	1	0	0	0	0	0	0	0	5579	232	8	5		5	FAM19A2	12	62273881	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	7530258	62273881	71578014	186	90548											
NAV3	89795	broad.mit.edu	37	chr12	78570355	78570355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaacagattaccttgtaTgtcttttctttgtgtctttt	5	6	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78570355	C	C	78570355	1	2	87	0	1	0	0	0	0	0	0	0	10279	1479	51	5		5	NAV3	12	78570355	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	16296474	78570355	55281540	187	90549											
TSPAN19	144448	broad.mit.edu	37	chr12	85413556	85413556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaaatttcataggaatGtatccataaaaatttcatag	5	4	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85413556	T	T	85413556	1	4	87	0	1	0	0	0	0	0	0	0	16768	1392	48	3		3	TSPAN19	12	85413556	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	6843201	85413556	48438339	188	90550											
CEP290	80184	broad.mit.edu	37	chr12	88457805	88457805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcaagctgaaatttcaGttcaatattttcagatgaca	6	6	4	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88457805	T	T	88457805	3	4	87	1	0	0	0	0	1	0	0	0	3283	1020	36	3	1256	3	CEP290	12	88457805	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	3044249	88457805	45394090	189	90551											
C12orf63	374467	broad.mit.edu	37	chr12	97073230	97073230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaattgatctgaatGttgaaacacctgctgcagat	7	6	1	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97073230	T	T	97073230	1	4	87	0	1	0	0	0	0	0	0	0	1719	1392	48	3		3	C12orf63	12	97073230	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8615425	97073230	36778665	190	90552											
UNG	7374	broad.mit.edu	37	chr12	109536197	109536197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacgcctgggaaggggccGctgcagctcttgagccgcct	16	14	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109536197	T	T	109536197	1	4	87	0	1	0	0	0	0	0	0	0	17125	1074	38	3		3	UNG	12	109536197	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	12462967	109536197	24315698	191	90553											
GIT2	9815	broad.mit.edu	37	chr12	110403514	110403514	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaaccaagcattctacaGcccagtagagtcagtgagga	10	9	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110403514	T	T	110403514	1	4	87	0	1	0	0	0	0	0	0	0	6461	986	34	3		3	GIT2	12	110403514	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	867317	110403514	23448381	192	90554											
NOS1	4842	broad.mit.edu	37	chr12	117718561	117718562	+	Frame_Shift_Ins	INS	-	G	G													cacattggctgggtcccccaINSgggtggagccgtcaggctgc							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117718562	G	G	117718561	7	5	87	1	0	1	1	0	0	0	0	0	10636	188	7	0	2899	0	NOS1	12	117718561	Frame_Shift_Ins	INS	-	TCGA-17-Z058-01A-01W-0747-08	7315047	117718561	16133334	193	90555											
DNAH10	196385	broad.mit.edu	37	chr12	124408974	124408974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaataatcagactgtctggCaggaggtgagcccacgttcc	12	10	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124408974	A	A	124408974	3	1	87	1	0	0	0	0	1	0	0	0	4638	711	25	3	11669	3	DNAH10	12	124408974	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	6690413	124408974	9442921	194	90556											
RB1	5925	broad.mit.edu	37	chr13	49037787	49037787	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctttcttttttgaggctAaaagaaagaaaatggtattt	7	4	1	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49037787	G	G	49037787	1	3	87	0	1	0	0	0	0	0	0	0	13206	377	13	5		5	RB1	13	49037787	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08		49037787	66132091	195	90557											
KLHL1	57626	broad.mit.edu	37	chr13	70681530	70681530	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagccccttgctgcagcctcGtggcaactggaagcagggtg	15	12	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70681530	C	C	70681530	3	2	87	1	0	0	0	0	1	0	0	0	8436	1145	40	4	1988	4	KLHL1	13	70681530	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	21643743	70681530	44488348	196	90558											
PCID2	55795	broad.mit.edu	37	chr13	113833487	113833487	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcacctcttaataagcCggtgttctaaaggagtaaaa	9	7	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113833487	T	T	113833487	1	4	87	0	1	0	0	0	0	0	0	0	11673	667	23	4		4	PCID2	13	113833487	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	43151957	113833487	1336391	197	90559											
FLJ10357	55701	broad.mit.edu	37	chr14	21548733	21548733	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcactcaaagttctatagatTggggtggtggggctgatgct	14	6	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21548733	A	A	21548733	1	1	87	0	1	0	0	0	0	0	0	0	5983	1827	63	5		5	FLJ10357	14	21548733	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08		21548733	85800807	198	90560											
SLC7A7	9056	broad.mit.edu	37	chr14	23245179	23245179	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaagagtcattagcaggAtctaaaagggatgaaagaca	12	4	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23245179	G	G	23245179	1	3	87	0	1	0	0	0	0	0	0	0	14817	348	12	5		5	SLC7A7	14	23245179	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	1696446	23245179	84104361	199	90561											
G2E3	55632	broad.mit.edu	37	chr14	31081270	31081270	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggatgatcagacatttatTctagaagaatatttcttggt	8	5	3	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31081270	A	A	31081270	1	1	87	0	1	0	0	0	0	0	0	0	6200	1798	62	5		5	G2E3	14	31081270	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	7836091	31081270	76268270	200	90562											
BAZ1A	11177	broad.mit.edu	37	chr14	35269305	35269305	+	Intron	DEL	T	-	-													agggagataaaccaatcaacTttctatgcacattcataaat							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35269305	-	-	35269305	6	5	87	0	1	1	0	1	0	0	0	0	1334	1624	56	0		0	BAZ1A	14	35269305	Intron	DEL	T	TCGA-17-Z058-01A-01W-0747-08	4188035	35269305	72080235	201	90563											
FSCB	84075	broad.mit.edu	37	chr14	44974834	44974835	+	Missense_Mutation	DNP	CC	AG	AG													agactgaaattcagtaggagCctcttctgcaggggtctcca							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	44974835	AG	AG	44974834	3	1	87	1	0	0	0	0	1	0	0	0	6126	739	26	3	1124	3	FSCB	14	44974834	Missense_Mutation	DNP	CC	TCGA-17-Z058-01A-01W-0747-08	9705529	44974834	62374706	202	90564											
CDKL1	8814	broad.mit.edu	37	chr14	50809539	50809539	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagctgggaagagaagggtGgcaaccacagcttgccaaga	14	8	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50809539	A	A	50809539	1	1	87	0	1	0	0	0	0	0	0	0	3183	1363	47	4		4	CDKL1	14	50809539	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	5834705	50809539	56540001	203	90565											
RTN1	6252	broad.mit.edu	37	chr14	60074109	60074109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccaggtaggccacgaCgctcaccacgctgaactggg	14	14	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60074109	A	A	60074109	3	1	87	1	0	0	0	0	1	0	0	0	13836	536	19	3	487	3	RTN1	14	60074109	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	9264570	60074109	47275431	204	90566											
PAPLN	89932	broad.mit.edu	37	chr14	73725832	73725832	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgagtggatggtacaTgggggtgtgggggtcacagt	20	4	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73725832	A	A	73725832	1	1	87	0	1	0	0	0	0	0	0	0	11522	1479	51	5		5	PAPLN	14	73725832	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	13651723	73725832	33623708	205	90567											
NRXN3	9369	broad.mit.edu	37	chr14	80271312	80271312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaattcttcatcctacgGtatgccctctctagaaaaat	5	10	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80271312	T	T	80271312	1	4	87	0	1	0	0	0	0	0	0	0	10762	1276	44	3		3	NRXN3	14	80271312	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	6545480	80271312	27078228	206	90568											
KCNK10	54207	broad.mit.edu	37	chr14	88652450	88652450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgtctcccggaactcaGccgtgacattggccttccac	10	16	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88652450	T	T	88652450	3	4	87	1	0	0	0	0	1	0	0	0	8129	971	34	3	574	3	KCNK10	14	88652450	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8381138	88652450	18697090	207	90569											
SLC24A4	123041	broad.mit.edu	37	chr14	92909141	92909141	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgcataattggagtgtGcggactgtttgctggccagg	15	8	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92909141	A	A	92909141	3	1	87	1	0	0	0	0	1	0	0	0	14582	1319	46	4	534	4	SLC24A4	14	92909141	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4256691	92909141	14440399	208	90570											
MTA1	9112	broad.mit.edu	37	chr14	105920679	105920679	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgccctgggcatggagccctCtgtcctgtcctgtcctgccg	12	17	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105920679	T	T	105920679	1	4	87	0	1	0	0	0	0	0	0	0	10002	928	32	4		4	MTA1	14	105920679	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	13011538	105920679	1428861	209	90571											
CHRFAM7A	89832	broad.mit.edu	37	chr15	30659760	30659760	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacagatgcagggtgagacCcggggatcctgtggcactgc	16	10	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30659760	T	T	30659760	1	4	87	0	1	0	0	0	0	0	0	0	3406	638	22	4		4	CHRFAM7A	15	30659760	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08		30659760	71871632	210	90572											
MYO5C	55930	broad.mit.edu	37	chr15	52485902	52485902	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcttttccaaatacagCtggtgtgtgtgaattcttac	9	8	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52485902	A	A	52485902	1	1	87	0	1	0	0	0	0	0	0	0	10174	812	28	3		3	MYO5C	15	52485902	3'UTR	SNP	C	TCGA-17-Z058-01A-01W-0747-08	21826142	52485902	50045490	211	90573											
MYO5A	4644	broad.mit.edu	37	chr15	52609419	52609419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagttgactgacattgtaCctatgaaaaaaaagagatac	7	7	0	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52609419	A	A	52609419	3	1	87	1	0	0	0	0	1	0	0	0	10172	521	18	3	419	3	MYO5A	15	52609419	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	123517	52609419	49921973	212	90574											
PRTG	283659	broad.mit.edu	37	chr15	55912626	55912626	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgatgcacgctcctgctcCtatcccttacctcactgacc	5	18	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55912626	T	T	55912626	1	4	87	0	1	0	0	0	0	0	0	0	12744	696	24	4		4	PRTG	15	55912626	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3303207	55912626	46618766	213	90575											
CSNK1G1	53944	broad.mit.edu	37	chr15	64592821	64592821	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggagttcttttagcacCatatttgtttgtaatgtatc	8	5	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64592821	T	T	64592821	1	4	87	0	1	0	0	0	0	0	0	0	3988	609	21	4		4	CSNK1G1	15	64592821	5'UTR	SNP	C	TCGA-17-Z058-01A-01W-0747-08	8680195	64592821	37938571	214	90576											
IGDCC3	9543	broad.mit.edu	37	chr15	65621995	65621995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacagaggcagtgagccCacactcaccttctctaggcc	10	14	2	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65621995	A	A	65621995	1	1	87	0	1	0	0	0	0	0	0	0	7638	609	21	2		2	IGDCC3	15	65621995	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1029174	65621995	36909397	215	90577											
MAP2K5	5607	broad.mit.edu	37	chr15	67878990	67878990	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttaatggaataatgacagGaatagaatattatgtaatgt	8	1	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67878990	T	T	67878990	1	4	87	0	1	0	0	0	0	0	0	0	9332	1189	41	3		3	MAP2K5	15	67878990	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	2256995	67878990	34652402	216	90578											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84685363	84685363	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatatgtaaaattatttcTaggcatttggccagcctttt	7	7	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84685363	C	C	84685363	1	2	87	0	1	0	0	0	0	0	0	0	276	1537	53	5		5	ADAMTSL3	15	84685363	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	16806373	84685363	17846029	217	90579											
FAM169B	283777	broad.mit.edu	37	chr15	98995157	98995157	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggctgttcccaagcctcgGtgccagtgtttcctcctgat	10	13	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98995157	A	A	98995157	2	1	87	1	0	0	0	0	0	0	0	1	5533	1252	44	4		4	FAM169B	15	98995157	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	14309794	98995157	3536235	218	90580											
ADAMTS17	170691	broad.mit.edu	37	chr15	100801842	100801842	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccaatggacaacttagcCtaaaaaaagtcagaggacag	9	9	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100801842	A	A	100801842	5	1	87	1	0	0	0	0	0	0	1	0	262	695	24	2	2482	2	ADAMTS17	15	100801842	Splice_Site	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1806685	100801842	1729550	219	90581											
ASB7	140460	broad.mit.edu	37	chr15	101186038	101186038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaacgcgacatcccacaCgctaatttcatggtcccaag	7	15	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101186038	A	A	101186038	1	1	87	0	1	0	0	0	0	0	0	0	1032	551	19	3		3	ASB7	15	101186038	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	384196	101186038	1345354	220	90582											
SNRPA1	6627	broad.mit.edu	37	chr15	101833351	101833351	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggtctaacgtagcacctaGattttcaatgacgggaattt	9	8	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101833351	C	C	101833351	3	2	87	1	0	0	0	0	1	0	0	0	14974	933	33	4	690	4	SNRPA1	15	101833351	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	647313	101833351	698041	221	90583											
TELO2	9894	broad.mit.edu	37	chr16	1545620	1545620	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggcggttgtggactctctCcaaggtgaggccctgcctcg	14	13	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1545620	T	T	1545620	2	4	87	1	0	0	0	0	0	0	0	1	15879	842	30	4		4	TELO2	16	1545620	Silent	SNP	C	TCGA-17-Z058-01A-01W-0747-08		1545620	88809133	222	90584											
BTBD12	84464	broad.mit.edu	37	chr16	3652101	3652101	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatacacgggagaggcgacGgcccaagctgcccccacctg	12	16	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3652101	A	A	3652101	1	1	87	0	1	0	0	0	0	0	0	0	1549	1131	39	4		4	BTBD12	16	3652101	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	2106481	3652101	86702652	223	90585											
C16orf89	146556	broad.mit.edu	37	chr16	5110235	5110235	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagcgggacaggaccagcTgagaactagtgcgtttgggt	17	7	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5110235	G	G	5110235	1	3	87	0	1	0	0	0	0	0	0	0	1856	1595	55	5		5	C16orf89	16	5110235	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	1458134	5110235	85244518	224	90586											
PLK1	5347	broad.mit.edu	37	chr16	23701145	23701145	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccctaacatacactggcctCtgggatcgccaacccctgct	7	17	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23701145	G	G	23701145	1	3	87	0	1	0	0	0	0	0	0	0	12189	928	32	4		4	PLK1	16	23701145	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	18590910	23701145	66653608	225	90587											
RBBP6	5930	broad.mit.edu	37	chr16	24567073	24567074	+	Intron	INS	-	C	C													gaacttttggggtgggttttINScccccccaatcaaaagcact							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24567074	C	C	24567073	6	5	87	0	1	1	1	0	0	0	0	0	13211	1798	62	0		0	RBBP6	16	24567073	Intron	INS	-	TCGA-17-Z058-01A-01W-0747-08	865928	24567073	65787680	226	90588											
KCTD13	253980	broad.mit.edu	37	chr16	29922203	29922203	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatctggctcctgcctccTggtggtgggctccttcccct	12	15	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29922203	A	A	29922203	1	1	87	0	1	0	0	0	0	0	0	0	8170	1595	55	5		5	KCTD13	16	29922203	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	5355130	29922203	60432550	227	90589											
ZNF629	23361	broad.mit.edu	37	chr16	30793474	30793474	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagcagcagctcagagctGaggccaaagctttgtttgca	12	10	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30793474	A	A	30793474	2	1	87	1	0	0	0	0	0	0	0	1	18180	1277	45	4		4	ZNF629	16	30793474	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	871271	30793474	59561279	228	90590											
ITGAD	3681	broad.mit.edu	37	chr16	31415108	31415108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggggctgcagggagaacCtccccccggggtgctcctgg	17	14	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31415108	A	A	31415108	1	1	87	0	1	0	0	0	0	0	0	0	7954	696	24	2		2	ITGAD	16	31415108	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	621634	31415108	58939645	229	90591											
ITGAD	3681	broad.mit.edu	37	chr16	31435088	31435088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcatctgttccccaccCcaaacctgaccatatttttt	3	16	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31435088	A	A	31435088	1	1	87	0	1	0	0	0	0	0	0	0	7954	638	22	2		2	ITGAD	16	31435088	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	19980	31435088	58919665	230	90592											
ABCC12	94160	broad.mit.edu	37	chr16	48172351	48172351	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagctggcctaaaaatcCagaaatgggagtgtaagtgc	12	7	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48172351	G	G	48172351	1	3	87	0	1	0	0	0	0	0	0	0	52	609	21	4		4	ABCC12	16	48172351	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	16737263	48172351	42182402	231	90593											
ZNF423	23090	broad.mit.edu	37	chr16	49823452	49823452	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagtctgaggcctccccctCttcaactgaaagagagaaca	9	12	3	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49823452	A	A	49823452	4	1	87	1	0	0	0	0	0	1	0	0	18025	922	32	3	3860	3	ZNF423	16	49823452	Nonsense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1651101	49823452	40531301	232	90594											
IRX5	10265	broad.mit.edu	37	chr16	54966629	54966629	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatcatcaccaagatgaccCtcacccaggtgtccacctgg	7	17	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54966629	G	G	54966629	3	3	87	1	0	0	0	0	1	0	0	0	7917	681	24	4	475	4	IRX5	16	54966629	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	5143177	54966629	35388124	233	90595											
CNGB1	1258	broad.mit.edu	37	chr16	57957089	57957089	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagtctgccttgcggtagaAggttctaaaagcatccacac	9	10	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57957089	T	T	57957089	1	4	87	0	1	0	0	0	0	0	0	0	3632	87	3	5		5	CNGB1	16	57957089	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	2990460	57957089	32397664	234	90596											
CDH16	1014	broad.mit.edu	37	chr16	66945908	66945908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctcctggtccaacttggGgggtggcatcactctctcca	11	14	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66945908	T	T	66945908	3	4	87	1	0	0	0	0	1	0	0	0	3131	1232	43	2	829	2	CDH16	16	66945908	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8988819	66945908	23408845	235	90597											
HAS3	3038	broad.mit.edu	37	chr16	69143594	69143594	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcataccaggaggaccctgActacttgcgcaagtgcctgc	11	14	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69143594	C	C	69143594	3	2	87	1	0	0	0	0	1	0	0	0	7029	275	10	5	298	5	HAS3	16	69143594	Missense_Mutation	SNP	A	TCGA-17-Z058-01A-01W-0747-08	2197686	69143594	21211159	236	90598											
NQO1	1728	broad.mit.edu	37	chr16	69744936	69744936	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttgcccaagtgatggccCacagaaaggccaaatttctt	9	11	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69744936	T	T	69744936	2	4	87	1	0	0	0	0	0	0	0	1	10706	581	21	4		4	NQO1	16	69744936	Silent	SNP	C	TCGA-17-Z058-01A-01W-0747-08	601342	69744936	20609817	237	90599											
HYDIN	54768	broad.mit.edu	37	chr16	71053940	71053940	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcattttaaattttctgtAgtcttccctgtttgcttcct	4	10	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71053940	T	T	71053940	1	4	87	0	1	0	0	0	0	0	0	0	7537	435	15	5		5	HYDIN	16	71053940	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	1309004	71053940	19300813	238	90600											
ANKRD11	29123	broad.mit.edu	37	chr16	89525590	89525590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggccaagagcatggatgGgaaaggcagatgtgcatctg	16	6	1	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89525590	A	A	89525590	1	1	87	0	1	0	0	0	0	0	0	0	639	1247	43	4		4	ANKRD11	16	89525590	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	18471650	89525590	829163	239	90601											
GAS7	8522	broad.mit.edu	37	chr17	9873163	9873163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactgcagccccttttccCacctccttccttggctctga	5	19	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9873163	A	A	9873163	1	1	87	0	1	0	0	0	0	0	0	0	6312	609	21	2		2	GAS7	17	9873163	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08		9873163	71322047	240	90602											
LGALS9B	284194	broad.mit.edu	37	chr17	20361582	20361582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcttcctctcctcgggccCccatcttcctttctgcctcg	5	20	4	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20361582	T	T	20361582	3	4	87	1	0	0	0	0	1	0	0	0	8821	623	22	4	856	4	LGALS9B	17	20361582	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	10488419	20361582	60833628	241	90603											
SYNRG	11276	broad.mit.edu	37	chr17	35900731	35900732	+	Intron	DEL	TC	-	-													cctcgctaccacaaccctctTcttttttttttttttttttt							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35900732	-	-	35900731	6	5	87	0	1	1	0	1	0	0	0	0	15579	1798	62	0		0	SYNRG	17	35900731	Intron	DEL	TC	TCGA-17-Z058-01A-01W-0747-08	15539149	35900731	45294479	242	90604											
DNAJC7	7266	broad.mit.edu	37	chr17	40134023	40134023	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcactggctccactatgccGatctaaagtggggagtaaaa	11	9	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40134023	A	A	40134023	3	1	87	1	0	0	0	0	1	0	0	0	4694	1057	37	4	262	4	DNAJC7	17	40134023	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4233292	40134023	41061187	243	90605											
AOC3	8639	broad.mit.edu	37	chr17	41004563	41004563	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgcccctgacccgtggGgtggactgcccctacttggc	12	17	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41004563	T	T	41004563	2	4	87	1	0	0	0	0	0	0	0	1	730	1219	43	2		2	AOC3	17	41004563	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	870540	41004563	40190647	244	90606											
SLC4A1	6521	broad.mit.edu	37	chr17	42340032	42340032	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctccatctgggactcgggGatgtctgggtcttcatattc	11	11	4	0	rs55900479		TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42340032	T	T	42340032	2	4	87	1	0	0	0	0	0	0	0	1	14764	1164	41	3		3	SLC4A1	17	42340032	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1335469	42340032	38855178	245	90607											
CRHR1	1394	broad.mit.edu	37	chr17	43911320	43911320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggggcagcccagaggCtgggtgggcaacacctgcag	17	11	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43911320	A	A	43911320	1	1	87	0	1	0	0	0	0	0	0	0	3903	812	28	3		3	CRHR1	17	43911320	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	1571288	43911320	37283890	246	90608											
TLK2	11011	broad.mit.edu	37	chr17	60558417	60558417	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taattactgtgagttttgttCtacagaaaattgcctcctca	6	8	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60558417	G	G	60558417	1	3	87	0	1	0	0	0	0	0	0	0	16067	928	32	4		4	TLK2	17	60558417	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	16647097	60558417	20636793	247	90609											
UNC13D	201294	broad.mit.edu	37	chr17	73830750	73830750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaagagagctcgcgggcCcgggcctttataaggctgca	14	12	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73830750	A	A	73830750	2	1	87	1	0	0	0	0	0	0	0	1	17113	610	22	2		2	UNC13D	17	73830750	Silent	SNP	C	TCGA-17-Z058-01A-01W-0747-08	13272333	73830750	7364460	248	90610											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74623576	74623577	+	Nonsense_Mutation	DNP	GG	TT	TT													tcactctggttgaagtgtctGgagtccaggaagagagtgag							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	74623577	TT	TT	74623576	4	4	87	1	0	0	0	0	0	1	0	0	15341	1335	47	2	909	2	ST6GALNAC1	17	74623576	Nonsense_Mutation	DNP	GG	TCGA-17-Z058-01A-01W-0747-08	792826	74623576	6571634	249	90611											
RPTOR	57521	broad.mit.edu	37	chr17	78858847	78858847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcccttggcacgttcgtgGgcaactctgcagagaggacg	14	12	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78858847	T	T	78858847	3	4	87	1	0	0	0	0	1	0	0	0	13776	1232	43	2	1948	2	RPTOR	17	78858847	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	4235271	78858847	2336363	250	90612											
ANKRD30B	374860	broad.mit.edu	37	chr18	14799008	14799008	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttcaatccaagcatcatGaggattcgtcttcatattca	5	10	5	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14799008	A	A	14799008	1	1	87	0	1	0	0	0	0	0	0	0	659	1305	45	4		4	ANKRD30B	18	14799008	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08		14799008	63278240	251	90613											
LAMA3	3909	broad.mit.edu	37	chr18	21496830	21496830	+	Intron	DEL	T	-	-													ctgttggctgggaaatgtacTttttttttttttttaacatt							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21496830	-	-	21496830	6	5	87	0	1	1	0	1	0	0	0	0	8679	1624	56	0		0	LAMA3	18	21496830	Intron	DEL	T	TCGA-17-Z058-01A-01W-0747-08	6697822	21496830	56580418	252	90614											
MOCOS	55034	broad.mit.edu	37	chr18	33784959	33784960	+	Intron	INS	-	AAAAA	AAAAA													agtgagtgagaccgtgtctcINSaaaaaaaaaaaaaaaaaaaa							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAAAA	33784960	AAAAA	AAAAA	33784959	6	5	87	0	1	1	1	0	0	0	0	0	9783	841	29	0		0	MOCOS	18	33784959	Intron	INS	-	TCGA-17-Z058-01A-01W-0747-08	12288129	33784959	44292289	253	90615											
TCF4	6925	broad.mit.edu	37	chr18	52924410	52924410	+	Intron	DEL	C	-	-													ataggctaatgactctggctCccgcaaacctgtgtgcttaa							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52924410	-	-	52924410	6	5	87	0	1	1	0	1	0	0	0	0	15817	870	30	0		0	TCF4	18	52924410	Intron	DEL	C	TCGA-17-Z058-01A-01W-0747-08	19139451	52924410	25152838	254	90616											
CDH7	1005	broad.mit.edu	37	chr18	63476768	63476768	+	Intron	DEL	A	-	-													attgtcttgctcacatgtacAagctgacacattctaatagc							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63476768	-	-	63476768	6	5	87	0	1	1	0	1	0	0	0	0	3145	145	5	0		0	CDH7	18	63476768	Intron	DEL	A	TCGA-17-Z058-01A-01W-0747-08	10552358	63476768	14600480	255	90617											
CNDP2	55748	broad.mit.edu	37	chr18	72185680	72185680	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgtaggtcactagcactgGatcaaatgcaagcttataaa	8	10	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72185680	T	T	72185680	1	4	87	0	1	0	0	0	0	0	0	0	3626	1189	41	3		3	CNDP2	18	72185680	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8708912	72185680	5891568	256	90618											
ATP9B	374868	broad.mit.edu	37	chr18	77108269	77108269	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaaaaaaaaAcaaaaaacgtatatagaaga	3	2	0	2	rs57257712		TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77108269	C	C	77108269	1	2	87	0	1	0	0	0	0	0	0	0	1203	58	2	5		5	ATP9B	18	77108269	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	4922589	77108269	968979	257	90619											
PIP5K1C	23396	broad.mit.edu	37	chr19	3646069	3646070	+	Intron	INS	-	G	G													ccgtgtcctggaagagagttINSggggggggtgcccgggggca							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3646070	G	G	3646069	6	5	87	0	1	1	1	0	0	0	0	0	12036	1827	63	0		0	PIP5K1C	19	3646069	Intron	INS	-	TCGA-17-Z058-01A-01W-0747-08		3646069	55482914	258	90620											
KDM4B	23030	broad.mit.edu	37	chr19	5082484	5082484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccaacttcgccaccctgcGgtggattgactacggcaaag	10	13	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5082484	T	T	5082484	3	4	87	1	0	0	0	0	1	0	0	0	8199	1116	39	1	913	1	KDM4B	19	5082484	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1436415	5082484	54046499	259	90621											
FBN3	84467	broad.mit.edu	37	chr19	8182044	8182052	+	Splice_Site	DEL	CCCACCTAC	-	-													ggcagtgggaagaagttgtgCccacctacctgcacatgccc							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8182052	-	-	8182044	8	5	87	1	0	1	0	1	0	0	1	0	5761	754	26	0		0	FBN3	19	8182044	Splice_Site	DEL	CCCACCTAC	TCGA-17-Z058-01A-01W-0747-08	3099560	8182044	50946939	260	90622											
LDLR	3949	broad.mit.edu	37	chr19	11216333	11216333	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgtccctgggctcccCcaggtgtgggacatgcagtg	13	14	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11216333	G	G	11216333	1	3	87	0	1	0	0	0	0	0	0	0	8776	638	22	4		4	LDLR	19	11216333	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3034289	11216333	47912650	261	90623											
SYDE1	85360	broad.mit.edu	37	chr19	15221574	15221574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaccccaccccaaccctcTggcccccagacctcagacca	4	25	2	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15221574	A	A	15221574	1	1	87	0	1	0	0	0	0	0	0	0	15554	1595	55	5		5	SYDE1	19	15221574	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	4005241	15221574	43907409	262	90624											
CYP4F2	8529	broad.mit.edu	37	chr19	16006098	16006099	+	Intron	DNP	GG	TT	TT													ccttgggttgaggtctcttaGggttccagggcagcccagaa					rs112443547	by1000genomes	TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	16006099	TT	TT	16006098	1	4	87	0	1	0	0	0	0	0	0	0	4221	1015	35	2		2	CYP4F2	19	16006098	Intron	DNP	GG	TCGA-17-Z058-01A-01W-0747-08	784524	16006098	43122885	263	90625											
CYP4F11	57834	broad.mit.edu	37	chr19	16024899	16024899	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccaaacctggcccaggctCctacccccagttcagataaa	6	18	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16024899	A	A	16024899	1	1	87	0	1	0	0	0	0	0	0	0	4219	870	30	3		3	CYP4F11	19	16024899	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	18801	16024899	43104084	264	90626											
UPF1	5976	broad.mit.edu	37	chr19	18956882	18956882	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttgaacttcgaggaagatGaagaagacacctattacacg	10	7	0	5			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18956882	A	A	18956882	3	1	87	1	0	0	0	0	1	0	0	0	17129	1291	45	4	331	4	UPF1	19	18956882	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	2931983	18956882	40172101	265	90627											
ZNF302	55900	broad.mit.edu	37	chr19	35173543	35173543	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactgtcctattattacttaCctgacatcacattcccagtc	3	13	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35173543	G	G	35173543	1	3	87	0	1	0	0	0	0	0	0	0	17958	522	18	4		4	ZNF302	19	35173543	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	16216661	35173543	23955440	266	90628											
SIPA1L3	23094	broad.mit.edu	37	chr19	38654993	38654993	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaaggtaacacggccagtaGatgagaagccaggatttgaa	12	8	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38654993	A	A	38654993	1	1	87	0	1	0	0	0	0	0	0	0	14444	957	33	4		4	SIPA1L3	19	38654993	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	3481450	38654993	20473990	267	90629											
RYR1	6261	broad.mit.edu	37	chr19	39058536	39058536	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaattctggggagaactggaGgtgcagagggtgaagttcct	17	5	1	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39058536	C	C	39058536	3	2	87	1	0	0	0	0	1	0	0	0	13879	991	35	4	14008	4	RYR1	19	39058536	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	403543	39058536	20070447	268	90630											
LIPE	3991	broad.mit.edu	37	chr19	42909604	42909604	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggagttgagccatgaGgaggcacccaggcggaagtc	17	8	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42909604	T	T	42909604	2	4	87	1	0	0	0	0	0	0	0	1	8894	987	35	2		2	LIPE	19	42909604	Silent	SNP	G	TCGA-17-Z058-01A-01W-0747-08	3851068	42909604	16219379	269	90631											
EML2	24139	broad.mit.edu	37	chr19	46119641	46119641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgttgaagctgcgctcCcttgaggtagaaaattggtt	13	6	0	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46119641	A	A	46119641	1	1	87	0	1	0	0	0	0	0	0	0	5139	638	22	2		2	EML2	19	46119641	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3210037	46119641	13009342	270	90632											
PPFIA3	8541	broad.mit.edu	37	chr19	49632087	49632087	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcctcttttccttgacccCatgccgtgtgcttgcagctg	9	14	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49632087	T	T	49632087	1	4	87	0	1	0	0	0	0	0	0	0	12407	609	21	4		4	PPFIA3	19	49632087	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3512446	49632087	9496896	271	90633											
TSKS	60385	broad.mit.edu	37	chr19	50245223	50245223	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctcgtccactagtgaggtCagtgctcggtccagcagctg	12	13	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50245223	T	T	50245223	2	4	87	1	0	0	0	0	0	0	0	1	16751	813	29	4		4	TSKS	19	50245223	Silent	SNP	C	TCGA-17-Z058-01A-01W-0747-08	613136	50245223	8883760	272	90634											
NAPSA	9476	broad.mit.edu	37	chr19	50868621	50868621	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatctggtcttaagagatgtCagagtggagcccttaggggt	14	6	3	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50868621	A	A	50868621	1	1	87	0	1	0	0	0	0	0	0	0	10260	841	29	3		3	NAPSA	19	50868621	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	623398	50868621	8260362	273	90635											
POLD1	5424	broad.mit.edu	37	chr19	50916880	50916880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctcctggtcacaccctGcccactctcctgttgcatcc	7	19	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50916880	T	T	50916880	1	4	87	0	1	0	0	0	0	0	0	0	12285	1334	46	3		3	POLD1	19	50916880	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	48259	50916880	8212103	274	90636											
SHANK1	50944	broad.mit.edu	37	chr19	51165647	51165647	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtccggaaggcaggatggGcagggacgagggcctgggcg	23	8	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51165647	A	A	51165647	3	1	87	1	0	0	0	0	1	0	0	0	14377	1203	42	4	428	4	SHANK1	19	51165647	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	248767	51165647	7963336	275	90637											
ZNF331	55422	broad.mit.edu	37	chr19	54079855	54079855	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacatttattctactggatAatttttatttctattagacg	4	6	3	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54079855	G	G	54079855	1	3	87	0	1	0	0	0	0	0	0	0	17975	377	13	5		5	ZNF331	19	54079855	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	2914208	54079855	5049128	276	90638											
LILRB2	10288	broad.mit.edu	37	chr19	54782759	54782759	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtactggcccccgtaggagCggctcacagggcccagggtg	16	13	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54782759	T	T	54782759	3	4	87	1	0	0	0	0	1	0	0	0	8863	768	27	4	969	4	LILRB2	19	54782759	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	702904	54782759	4346224	277	90639											
EPS8L1	54869	broad.mit.edu	37	chr19	55599012	55599012	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcccttcgcaaagagtgacGaggccccgtgggagaacgga	15	12	0	3			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55599012	T	T	55599012	1	4	87	0	1	0	0	0	0	0	0	0	5237	1073	37	3		3	EPS8L1	19	55599012	3'UTR	SNP	G	TCGA-17-Z058-01A-01W-0747-08	816253	55599012	3529971	278	90640											
NLRP5	126206	broad.mit.edu	37	chr19	56520233	56520233	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccaggttagaggggtggAgttgggggaaataggatgtg	21	2	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56520233	T	T	56520233	1	4	87	0	1	0	0	0	0	0	0	0	10575	319	11	5		5	NLRP5	19	56520233	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	921221	56520233	2608750	279	90641											
ZNF550	162972	broad.mit.edu	37	chr19	58058537	58058537	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatccgctggtgctgtaTgagttctgagctgcatctga	13	8	2	4			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58058537	C	C	58058537	3	2	87	1	0	0	0	0	1	0	0	0	18109	1464	51	5	197	5	ZNF550	19	58058537	Missense_Mutation	SNP	T	TCGA-17-Z058-01A-01W-0747-08	1538304	58058537	1070446	280	90642											
ZNF256	10172	broad.mit.edu	37	chr19	58452773	58452773	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaggtaaaggattttccaCattcactgcactcatatggc	7	10	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58452773	T	T	58452773	3	4	87	1	0	0	0	0	1	0	0	0	17925	478	17	4	484	4	ZNF256	19	58452773	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	394236	58452773	676210	281	90643											
PDYN	5173	broad.mit.edu	37	chr20	1960744	1960744	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtctaggtgtctgagccaAgcactaagcctattgtgggg	14	8	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1960744	G	G	1960744	1	3	87	0	1	0	0	0	0	0	0	0	11793	87	3	5		5	PDYN	20	1960744	3'UTR	SNP	A	TCGA-17-Z058-01A-01W-0747-08		1960744	61064776	282	90644											
ADAM33	80332	broad.mit.edu	37	chr20	3655762	3655762	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagcctgctgagagggGgtgttacagggaacactgaa	15	9	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3655762	A	A	3655762	1	1	87	0	1	0	0	0	0	0	0	0	250	1247	43	4		4	ADAM33	20	3655762	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	1695018	3655762	59369758	283	90645											
CHGB	1114	broad.mit.edu	37	chr20	5903537	5903537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggagccaggagaatcaCccccaggagtctaaaggcca	12	12	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5903537	A	A	5903537	3	1	87	1	0	0	0	0	1	0	0	0	3370	506	18	3	761	3	CHGB	20	5903537	Missense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	2247775	5903537	57121983	284	90646											
C20orf26	26074	broad.mit.edu	37	chr20	20208881	20208881	+	Intron	DEL	T	-	-													actccttctttgtcttcgtaTtttttttccagatgagttat							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20208881	-	-	20208881	6	5	87	0	1	1	0	1	0	0	0	0	2128	1508	52	0		0	C20orf26	20	20208881	Intron	DEL	T	TCGA-17-Z058-01A-01W-0747-08	14305344	20208881	42816639	285	90647											
TTLL9	164395	broad.mit.edu	37	chr20	30527080	30527080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatctcggtatgtagggCcaggtggggagtgggcacaa	16	8	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30527080	A	A	30527080	1	1	87	0	1	0	0	0	0	0	0	0	16860	754	26	3		3	TTLL9	20	30527080	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	10318199	30527080	32498440	286	90648											
SLC12A5	57468	broad.mit.edu	37	chr20	44682472	44682472	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcctttccccctcatccatCtcttagcctctcacatattc	1	18	3	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44682472	T	T	44682472	1	4	87	0	1	0	0	0	0	0	0	0	14499	928	32	4		4	SLC12A5	20	44682472	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	14155392	44682472	18343048	287	90649											
DDX27	55661	broad.mit.edu	37	chr20	47838010	47838010	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccattgtgctgggcagaCgacaaaaagctttggggaag	15	8	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47838010	T	T	47838010	4	4	87	1	0	0	0	0	0	1	0	0	4387	528	19	4	214	4	DDX27	20	47838010	Nonsense_Mutation	SNP	C	TCGA-17-Z058-01A-01W-0747-08	3155538	47838010	15187510	288	90650											
ZNF831	128611	broad.mit.edu	37	chr20	57768130	57768130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccatgaggacatatccGcaggggcaacgccagagcct	12	13	0	2			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57768130	T	T	57768130	3	4	87	1	0	0	0	0	1	0	0	0	18314	1087	38	3	2058	3	ZNF831	20	57768130	Missense_Mutation	SNP	G	TCGA-17-Z058-01A-01W-0747-08	9930120	57768130	5257390	289	90651											
SFRS15	57466	broad.mit.edu	37	chr21	33064848	33064848	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaatcattacacaaaaTattcatgaactatattacaa	1	6	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33064848	C	C	33064848	1	2	87	0	1	0	0	0	0	0	0	0	14284	1421	49	5		5	SFRS15	21	33064848	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08		33064848	15065047	290	90652											
COL6A1	1291	broad.mit.edu	37	chr21	47420198	47420198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcccacagtccccgctGggaggggctgtctatggccc	14	15	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47420198	T	T	47420198	1	4	87	0	1	0	0	0	0	0	0	0	3731	1363	47	2		2	COL6A1	21	47420198	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	14355350	47420198	709697	291	90653											
MCM3AP	8888	broad.mit.edu	37	chr21	47697436	47697436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacctctgccaccaagtgcCataccttgccgcatgatcct	7	16	1	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47697436	T	T	47697436	1	4	87	0	1	0	0	0	0	0	0	0	9481	609	21	4		4	MCM3AP	21	47697436	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	277238	47697436	432459	292	90654											
MYO18B	84700	broad.mit.edu	37	chr22	26388490	26388490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggctcggcggggctgggCgcagcaggtgggcggcatcc	22	11	0	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26388490	A	A	26388490	1	1	87	0	1	0	0	0	0	0	0	0	10160	783	27	3		3	MYO18B	22	26388490	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08		26388490	24916076	293	90655											
MYH9	4627	broad.mit.edu	37	chr22	36691012	36691012	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgctccgccagctccTccacggcctgtgagtgcttc	10	18	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36691012	A	A	36691012	3	1	87	1	0	0	0	0	1	0	0	0	10136	1551	54	5	2346	5	MYH9	22	36691012	Missense_Mutation	SNP	T	TCGA-17-Z058-01A-01W-0747-08	10302522	36691012	14613554	294	90656											
NCF4	4689	broad.mit.edu	37	chr22	37266619	37266619	+	Intron	DEL	G	-	-													cctgggcttccacatggccaGagccctgggtccctgctgga							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37266619	-	-	37266619	6	5	87	0	1	1	0	1	0	0	0	0	10313	957	33	0		0	NCF4	22	37266619	Intron	DEL	G	TCGA-17-Z058-01A-01W-0747-08	575607	37266619	14037947	295	90657											
SH3BP1	23616	broad.mit.edu	37	chr22	38051273	38051273	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctcaccctttccttcctCaacagccaagcgcccggcgc	6	21	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38051273	T	T	38051273	1	4	87	0	1	0	0	0	0	0	0	0	14357	841	29	4		4	SH3BP1	22	38051273	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	784654	38051273	13253293	296	90658											
GTSE1	51512	broad.mit.edu	37	chr22	46724900	46724900	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctgccatgcttcatcctGgggccagtgcctccgtgcca	10	17	1	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46724900	A	A	46724900	1	1	87	0	1	0	0	0	0	0	0	0	6950	1363	47	4		4	GTSE1	22	46724900	Intron	SNP	G	TCGA-17-Z058-01A-01W-0747-08	8673627	46724900	4579666	297	90659											
ASMT	438	broad.mit.edu	37	chrX	1742081	1742081	+	Frame_Shift_Del	DEL	C	-	-													gtttgaccttctcgccgaggCcccagggcccctggacgtgg							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1742081	-	-	1742081	7	5	87	1	0	1	0	1	0	0	0	0	1049	739	26	0	125	0	ASMT	23	1742081	Frame_Shift_Del	DEL	C	TCGA-17-Z058-01A-01W-0747-08		1742081	153528479	298	90660											
NXF3	56000	broad.mit.edu	37	chrX	102344132	102344132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattccgacaggctcctcaCtggaagagacatcaacttac	7	13	2	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102344132	A	A	102344132	1	1	87	0	1	0	0	0	0	0	0	0	10880	580	20	3		3	NXF3	23	102344132	Intron	SNP	C	TCGA-17-Z058-01A-01W-0747-08	100602051	102344132	52926428	299	90661											
COL4A5	1287	broad.mit.edu	37	chrX	107937873	107937873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatgtatactgggagacaAtacttagcaaatgcaatcct	7	7	0	1			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107937873	G	G	107937873	1	3	87	0	1	0	0	0	0	0	0	0	3726	116	4	5		5	COL4A5	23	107937873	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	5593741	107937873	47332687	300	90662											
SLC6A14	11254	broad.mit.edu	37	chrX	115575018	115575018	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaaaatttgtacaaaacaAcaaaacattaatcatctcct	1	9	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115575018	G	G	115575018	1	3	87	0	1	0	0	0	0	0	0	0	14791	58	2	5		5	SLC6A14	23	115575018	Intron	SNP	A	TCGA-17-Z058-01A-01W-0747-08	7637145	115575018	39695542	301	90663											
IGSF1	3547	broad.mit.edu	37	chrX	130410341	130410341	+	Intron	DEL	A	-	-													ttaaaaattagaaaatatagAaaaaaaaactaatgaaggaa							TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130410341	-	-	130410341	6	5	87	0	1	1	0	1	0	0	0	0	7666	261	9	0		0	IGSF1	23	130410341	Intron	DEL	A	TCGA-17-Z058-01A-01W-0747-08	14835323	130410341	24860219	302	90664											
MCF2	4168	broad.mit.edu	37	chrX	138687013	138687013	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaaataaatattcaatTcagcaattacatactcgtta	2	6	2	0			TCGA-17-Z058-01A-01W-0747-08	TCGA-17-Z058-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138687013	C	C	138687013	1	2	87	0	1	0	0	0	0	0	0	0	9471	1798	62	5		5	MCF2	23	138687013	Intron	SNP	T	TCGA-17-Z058-01A-01W-0747-08	8276672	138687013	16583547	303	90665											
AJAP1	55966	broad.mit.edu	37	chr1	4834563	4834563	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaatctcctgctgactgGccgaagtcttttttacctcc	7	12	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4834563	T	T	4834563	1	4	88	0	1	0	0	0	0	0	0	0	438	1218	42	3		3	AJAP1	1	4834563	3'UTR	SNP	G	TCGA-17-Z059-01A-01W-0747-08		4834563	244416058	1	90666											
PIK3CD	5293	broad.mit.edu	37	chr1	9784484	9784484	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgagaaatttgaacggtgaGagtgcctgagccccaccaga	13	9	0	5			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9784484	C	C	9784484	1	2	88	0	1	0	0	0	0	0	0	0	12010	957	33	4		4	PIK3CD	1	9784484	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	4949921	9784484	239466137	2	90667											
UBE4B	10277	broad.mit.edu	37	chr1	10132305	10132305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatacctgggactcttttGtaattcttcttagctttttg	6	8	4	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10132305	T	T	10132305	1	4	88	0	1	0	0	0	0	0	0	0	17009	1392	48	3		3	UBE4B	1	10132305	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	347821	10132305	239118316	3	90668											
KIF1B	23095	broad.mit.edu	37	chr1	10397177	10397177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcgttctggtctgtccttgGaggagttgaggattgtggaa	15	6	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10397177	A	A	10397177	3	1	88	1	0	0	0	0	1	0	0	0	8354	1175	41	4	4632	4	KIF1B	1	10397177	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	264872	10397177	238853444	4	90669											
VPS13D	55187	broad.mit.edu	37	chr1	12439542	12439542	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtattccgttttccagAtacgagccactgatgctgag	10	9	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12439542	G	G	12439542	2	3	88	1	0	0	0	0	0	0	0	1	17319	347	12	5		5	VPS13D	1	12439542	Silent	SNP	A	TCGA-17-Z059-01A-01W-0747-08	2042365	12439542	236811079	5	90670											
PADI6	353238	broad.mit.edu	37	chr1	17720791	17720791	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccctggctcggtctctccCccagagccctggtattggct	10	16	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17720791	T	T	17720791	1	4	88	0	1	0	0	0	0	0	0	0	11475	638	22	4		4	PADI6	1	17720791	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5281249	17720791	231529830	6	90671											
ARID1A	8289	broad.mit.edu	37	chr1	27102066	27102066	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgacatggaggtttatttcAggaaccccggaggcatggcg	14	9	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27102066	G	G	27102066	5	3	88	1	0	0	0	0	0	0	1	0	915	202	7	5	5066	5	ARID1A	1	27102066	Splice_Site	SNP	A	TCGA-17-Z059-01A-01W-0747-08	9381275	27102066	222148555	7	90672											
CSMD2	114784	broad.mit.edu	37	chr1	34209071	34209071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctccacgtcaatgtcGttgaaggccaggtggatgcg	15	9	1	2	rs138506777		TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34209071	T	T	34209071	3	4	88	1	0	0	0	0	1	0	0	0	3979	1136	40	3	8824	3	CSMD2	1	34209071	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7107005	34209071	215041550	8	90673											
TIE1	7075	broad.mit.edu	37	chr1	43766818	43766818	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggtaagtctcccctgagtCcctcaccccatttctaggcc	8	16	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43766818	A	A	43766818	1	1	88	0	1	0	0	0	0	0	0	0	16016	870	30	3		3	TIE1	1	43766818	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	9557747	43766818	205483803	9	90674											
MPL	4352	broad.mit.edu	37	chr1	43805736	43805736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaacctgatgggatctcCctcggtggctcctggggatc	14	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43805736	A	A	43805736	2	1	88	1	0	0	0	0	0	0	0	1	9824	610	22	2		2	MPL	1	43805736	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	38918	43805736	205444885	10	90675											
HECTD3	79654	broad.mit.edu	37	chr1	45474482	45474482	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgtcaccgttagccccTagaaactcgggaccttcggg	11	13	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45474482	C	C	45474482	1	2	88	0	1	0	0	0	0	0	0	0	7108	1537	53	5		5	HECTD3	1	45474482	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	1668746	45474482	203776139	11	90676											
DNAJC6	9829	broad.mit.edu	37	chr1	65860662	65860662	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttctgaacacatccagtgCttccagtgacccctttctcc	5	15	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65860662	T	T	65860662	3	4	88	1	0	0	0	0	1	0	0	0	4693	797	28	4	1864	4	DNAJC6	1	65860662	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	20386180	65860662	183389959	12	90677											
SGIP1	84251	broad.mit.edu	37	chr1	67091482	67091482	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaccttcaaaatatgttcaCttgaatgttgctgagagagt	8	7	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67091482	G	G	67091482	1	3	88	0	1	0	0	0	0	0	0	0	14319	580	20	4		4	SGIP1	1	67091482	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1230820	67091482	182159139	13	90678											
C1orf173	127254	broad.mit.edu	37	chr1	75072483	75072483	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atactctctctctttcctcaCtttcccctcagccttcttca	1	18	6	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75072483	G	G	75072483	3	3	88	1	0	0	0	0	1	0	0	0	2034	565	20	4	3321	4	C1orf173	1	75072483	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	7981001	75072483	174178138	14	90679											
RABGGTB	5876	broad.mit.edu	37	chr1	76255150	76255150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagttttgttacaagtgaaGctgtcctacaaggtcaatga	9	6	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76255150	T	T	76255150	1	4	88	0	1	0	0	0	0	0	0	0	13076	986	34	3		3	RABGGTB	1	76255150	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1182667	76255150	172995471	15	90680											
ZZZ3	26009	broad.mit.edu	37	chr1	78046605	78046605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcgtgagccactggacCtggcctcataatactgactc	10	13	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78046605	A	A	78046605	1	1	88	0	1	0	0	0	0	0	0	0	18385	696	24	2		2	ZZZ3	1	78046605	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1791455	78046605	171204016	16	90681											
TTLL7	79739	broad.mit.edu	37	chr1	84335563	84335563	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acataaaacagcacttaatgGtcatgttctttgcatgttca	6	8	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84335563	T	T	84335563	1	4	88	0	1	0	0	0	0	0	0	0	16858	1276	44	3		3	TTLL7	1	84335563	3'UTR	SNP	G	TCGA-17-Z059-01A-01W-0747-08	6288958	84335563	164915058	17	90682											
EVI5	7813	broad.mit.edu	37	chr1	93221657	93221657	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagtaaatctgaagaaaaaGaagatagtgtgcctaagctg	10	5	1	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93221657	C	C	93221657	1	2	88	0	1	0	0	0	0	0	0	0	5331	957	33	4		4	EVI5	1	93221657	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	8886094	93221657	156028964	18	90683											
NTNG1	22854	broad.mit.edu	37	chr1	108003182	108003182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacagcaacttggctgcaCtgctggggaaaaaggcagct	12	10	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108003182	A	A	108003182	1	1	88	0	1	0	0	0	0	0	0	0	10799	580	20	3		3	NTNG1	1	108003182	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	14781525	108003182	141247439	19	90684											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	113000078	113000078	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgacattccatcagatttcGtccaaaagctcagtcagact	6	11	3	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113000078	C	C	113000078	1	2	88	0	1	0	0	0	0	0	0	0	4080	1160	40	4		4	CTTNBP2NL	1	113000078	3'UTR	SNP	G	TCGA-17-Z059-01A-01W-0747-08	4996896	113000078	136250543	20	90685											
NBPF10	100132406	broad.mit.edu	37	chr1	146227995	146227995	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctagatttcatggctaacAtaaggaagtggttagaaaag	11	4	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146227995	G	G	146227995	1	3	88	0	1	0	0	0	0	0	0	0	10287	232	8	5		5	NBPF10	1	146227995	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	33227917	146227995	103022626	21	90686											
S100A8	6279	broad.mit.edu	37	chr1	153362568	153362569	+	3'UTR	DNP	CA	AG	AG													aggggcccagcctctgggccCagtaactcagctactctttg							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	153362569	AG	AG	153362568	1	1	88	0	1	0	0	0	0	0	0	0	13897	609	21	2		2	S100A8	1	153362568	3'UTR	DNP	CA	TCGA-17-Z059-01A-01W-0747-08	7134573	153362568	95888053	22	90687											
AQP10	89872	broad.mit.edu	37	chr1	154293705	154293705	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctggcccggcagtgccTggcagagtttctgggtgtgt	15	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154293705	A	A	154293705	3	1	88	1	0	0	0	0	1	0	0	0	824	1580	55	5	76	5	AQP10	1	154293705	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	931137	154293705	94956916	23	90688											
BCAN	63827	broad.mit.edu	37	chr1	156626279	156626279	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacattggttttggccttgtCattaatgagtccctgtttta	8	7	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156626279	A	A	156626279	1	1	88	0	1	0	0	0	0	0	0	0	1350	841	29	3		3	BCAN	1	156626279	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2332574	156626279	92624342	24	90689											
FCRL2	79368	broad.mit.edu	37	chr1	157739968	157739968	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggatcacaatagtccccAaagcagtgacagctaagatt	9	9	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157739968	T	T	157739968	1	4	88	0	1	0	0	0	0	0	0	0	5852	145	5	5		5	FCRL2	1	157739968	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	1113689	157739968	91510653	25	90690											
OR6Y1	391112	broad.mit.edu	37	chr1	158517161	158517161	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtcaggtgggaggcacaGgtggagaatgccttttggcg	18	7	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517161	T	T	158517161	2	4	88	1	0	0	0	0	0	0	0	1	11307	987	35	2		2	OR6Y1	1	158517161	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	777193	158517161	90733460	26	90691											
ATP1A2	477	broad.mit.edu	37	chr1	160105634	160105634	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatctccccacaggccgcCtgatctttgacaacttgaag	8	13	2	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160105634	T	T	160105634	2	4	88	1	0	0	0	0	0	0	0	1	1133	680	24	4		4	ATP1A2	1	160105634	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1588473	160105634	89144987	27	90692											
F11R	50848	broad.mit.edu	37	chr1	160969293	160969293	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccccagctcttggtgttaGatgggtgatcagtgttcccc	12	12	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160969293	A	A	160969293	1	1	88	0	1	0	0	0	0	0	0	0	5381	957	33	4		4	F11R	1	160969293	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	863659	160969293	88281328	28	90693											
SELE	6401	broad.mit.edu	37	chr1	169699641	169699641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggtctccatgctgcttGgcaggtaacccctatcacag	10	13	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169699641	T	T	169699641	3	4	88	1	0	0	0	0	1	0	0	0	14126	1348	47	2	1221	2	SELE	1	169699641	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	8730348	169699641	79550980	29	90694											
TNN	63923	broad.mit.edu	37	chr1	175053017	175053017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgacaggacaggaggtaGctgaggtcactgtgcccaag	14	10	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175053017	T	T	175053017	3	4	88	1	0	0	0	0	1	0	0	0	16446	971	34	3	1194	3	TNN	1	175053017	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	5353376	175053017	74197604	30	90695											
TNR	7143	broad.mit.edu	37	chr1	175324505	175324506	+	Intron	DNP	GG	TT	TT													gcaggctgggtatccttgatGggaagctgatgagcaatcct							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	175324506	TT	TT	175324505	1	4	88	0	1	0	0	0	0	0	0	0	16461	1363	47	2		2	TNR	1	175324505	Intron	DNP	GG	TCGA-17-Z059-01A-01W-0747-08	271488	175324505	73926116	31	90696											
ACBD6	84320	broad.mit.edu	37	chr1	180257631	180257631	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagcagcagctctacaataTccagaaactcacaggcagag	10	11	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180257631	A	A	180257631	3	1	88	1	0	0	0	0	1	0	0	0	126	1435	50	5	136	5	ACBD6	1	180257631	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	4933126	180257631	68992990	32	90697											
RGL1	23179	broad.mit.edu	37	chr1	183869311	183869311	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagggaactgtgccctacCtgggcaccttcctgactgac	11	14	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183869311	T	T	183869311	2	4	88	1	0	0	0	0	0	0	0	1	13384	680	24	4		4	RGL1	1	183869311	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3611680	183869311	65381310	33	90698											
CFHR5	81494	broad.mit.edu	37	chr1	196965270	196965270	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagaaatgaatatgcaatGattggaaataacatgattac	8	4	0	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196965270	T	T	196965270	3	4	88	1	0	0	0	0	1	0	0	0	3318	1290	45	3	931	3	CFHR5	1	196965270	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	13095959	196965270	52285351	34	90699											
F13B	2165	broad.mit.edu	37	chr1	197009738	197009738	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtaatatataattcagcTggataagtatctcctctaca	5	9	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197009738	A	A	197009738	2	1	88	1	0	0	0	0	0	0	0	1	5384	1567	55	5		5	F13B	1	197009738	Silent	SNP	T	TCGA-17-Z059-01A-01W-0747-08	44468	197009738	52240883	35	90700											
CACNA1S	779	broad.mit.edu	37	chr1	201022390	201022390	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgacgatgagcagagccaCgtagggtagggcctgcaggg	17	9	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201022390	T	T	201022390	3	4	88	1	0	0	0	0	1	0	0	0	2573	536	19	4	1869	4	CACNA1S	1	201022390	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	4012652	201022390	48228231	36	90701											
CACNA1S	779	broad.mit.edu	37	chr1	201044785	201044785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcgggaacacagaggggCctgagagtcttctattggga	16	8	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201044785	A	A	201044785	1	1	88	0	1	0	0	0	0	0	0	0	2573	754	26	3		3	CACNA1S	1	201044785	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	22395	201044785	48205836	37	90702											
USH2A	7399	broad.mit.edu	37	chr1	216462889	216462889	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgcacctttcatctctAcctgccaatttagtgatcca	4	12	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216462889	C	C	216462889	1	2	88	0	1	0	0	0	0	0	0	0	17162	406	14	5		5	USH2A	1	216462889	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	15418104	216462889	32787732	38	90703											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220368627	220368627	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatatttgttattttaattGttaagtaattacctggcagc	7	4	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220368627	A	A	220368627	1	1	88	0	1	0	0	0	0	0	0	0	13044	1392	48	4		4	RAB3GAP2	1	220368627	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3905738	220368627	28881994	39	90704											
KIAA1804	84451	broad.mit.edu	37	chr1	233512305	233512305	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaggaggtaggatttgcttGagcagtccttggcatctgat	13	7	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233512305	C	C	233512305	1	2	88	0	1	0	0	0	0	0	0	0	8329	1305	45	4		4	KIAA1804	1	233512305	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	13143678	233512305	15738316	40	90705											
GPR137B	7107	broad.mit.edu	37	chr1	236332069	236332069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataccggtaagtactgcagGgcatctctttctgtggtaga	11	8	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236332069	T	T	236332069	1	4	88	0	1	0	0	0	0	0	0	0	6711	1247	43	2		2	GPR137B	1	236332069	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2819764	236332069	12918552	41	90706											
HEATR1	55127	broad.mit.edu	37	chr1	236762789	236762789	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcaattataccttaacTggcaacaaccagaaccatct	4	12	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236762789	A	A	236762789	2	1	88	1	0	0	0	0	0	0	0	1	7094	1567	55	5		5	HEATR1	1	236762789	Silent	SNP	T	TCGA-17-Z059-01A-01W-0747-08	430720	236762789	12487832	42	90707											
RYR2	6262	broad.mit.edu	37	chr1	237948105	237948105	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccctccgaggatctgaccGacttaaaggagctgacagag	12	11	1	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237948105	C	C	237948105	3	2	88	1	0	0	0	0	1	0	0	0	13880	1058	37	4	13451	4	RYR2	1	237948105	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1185316	237948105	11302516	43	90708											
ZP4	57829	broad.mit.edu	37	chr1	238049185	238049185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagctgcagctgacatggaGcctgcagagaaacaagattt	12	8	0	3	rs147732809		TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238049185	T	T	238049185	3	4	88	1	0	0	0	0	1	0	0	0	18347	985	34	3	805	3	ZP4	1	238049185	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	101080	238049185	11201436	44	90709											
FMN2	56776	broad.mit.edu	37	chr1	240334301	240334301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcaaggtcgtgagagcaGcacttgaggcatgtcagcag	14	8	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240334301	T	T	240334301	1	4	88	0	1	0	0	0	0	0	0	0	6008	986	34	3		3	FMN2	1	240334301	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2285116	240334301	8916320	45	90710											
PLD5	200150	broad.mit.edu	37	chr1	242270858	242270858	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacttaacgtgctttttgaaGattgccgtcctggttcttac	8	9	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242270858	T	T	242270858	1	4	88	0	1	0	0	0	0	0	0	0	12144	957	33	3		3	PLD5	1	242270858	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1936557	242270858	6979763	46	90711											
OR2W3	343171	broad.mit.edu	37	chr1	248059047	248059047	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgtcccggctggacccCcacctccacacccccatgta	8	20	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059047	A	A	248059047	2	1	88	1	0	0	0	0	0	0	0	1	11127	610	22	2		2	OR2W3	1	248059047	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5788189	248059047	1191574	47	90712											
OR2T27	403239	broad.mit.edu	37	chr1	248813308	248813308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctgtgacatccttgttcCtaaggctgtaaatgagtgga	10	10	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248813308	A	A	248813308	3	1	88	1	0	0	0	0	1	0	0	0	11115	681	24	2	78	2	OR2T27	1	248813308	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	754261	248813308	437313	48	90713											
MYT1L	23040	broad.mit.edu	37	chr2	1926086	1926086	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtatggctttttgacatgGctgtcactggatttaggctt	11	6	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1926086	C	C	1926086	3	2	88	1	0	0	0	0	1	0	0	0	10201	1194	42	4	2163	4	MYT1L	2	1926086	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08		1926086	241273287	49	90714											
SMC6	79677	broad.mit.edu	37	chr2	17865019	17865019	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagataggtctctcttgctTcttggtactgcctattatat	7	9	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17865019	A	A	17865019	3	1	88	1	0	0	0	0	1	0	0	0	14901	1783	62	5	605	5	SMC6	2	17865019	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	15938933	17865019	225334354	50	90715											
WDR35	57539	broad.mit.edu	37	chr2	20145500	20145500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcatccaggtttttataTttggctcattatttatagac	6	6	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20145500	C	C	20145500	1	2	88	0	1	0	0	0	0	0	0	0	17416	1508	52	5		5	WDR35	2	20145500	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	2280481	20145500	223053873	51	90716											
ZNF512	84450	broad.mit.edu	37	chr2	27837964	27837964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatataacctaaagagttggGtgtgaaacttttgggatatt	10	3	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27837964	T	T	27837964	1	4	88	0	1	0	0	0	0	0	0	0	18083	1276	44	3		3	ZNF512	2	27837964	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7692464	27837964	215361409	52	90717											
XDH	7498	broad.mit.edu	37	chr2	31611208	31611208	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtatttacaaagagtatTtgcagaagctaaggaatcta	10	4	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31611208	G	G	31611208	1	3	88	0	1	0	0	0	0	0	0	0	17553	1856	64	5		5	XDH	2	31611208	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	3773244	31611208	211588165	53	90718											
PEX13	5194	broad.mit.edu	37	chr2	61259019	61259019	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagcttttgcattggttagGactatacggtatctttacag	9	7	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61259019	C	C	61259019	3	2	88	1	0	0	0	0	1	0	0	0	11836	1165	41	4	564	4	PEX13	2	61259019	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	29647811	61259019	181940354	54	90719											
EHBP1	23301	broad.mit.edu	37	chr2	63101642	63101642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaaacacagtttctgcagGaaaagatctctctacttctc	6	10	4	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63101642	T	T	63101642	3	4	88	1	0	0	0	0	1	0	0	0	5015	1174	41	3	1303	3	EHBP1	2	63101642	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1842623	63101642	180097731	55	90720											
C2orf86	51057	broad.mit.edu	37	chr2	63402073	63402076	+	Intron	DEL	TTTC	-	-													acatatcccagtggaactttTttctttgtcaatttcaaaat							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63402076	-	-	63402073	6	5	88	0	1	1	0	1	0	0	0	0	2223	1856	64	0		0	C2orf86	2	63402073	Intron	DEL	TTTC	TCGA-17-Z059-01A-01W-0747-08	300431	63402073	179797300	56	90721											
C2orf78	388960	broad.mit.edu	37	chr2	74043580	74043580	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaaccctctagcctcaCgtaggcctgctgtggcttac	10	15	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74043580	T	T	74043580	3	4	88	1	0	0	0	0	1	0	0	0	2217	536	19	4	2240	4	C2orf78	2	74043580	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	10641507	74043580	169155793	57	90722											
C2orf78	388960	broad.mit.edu	37	chr2	74044001	74044001	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagcgtgaggccatgaagaGaaaggctcaacaagagcgtg	15	7	1	5			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74044001	C	C	74044001	3	2	88	1	0	0	0	0	1	0	0	0	2217	942	33	4	2661	4	C2orf78	2	74044001	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	421	74044001	169155372	58	90723											
DOK1	1796	broad.mit.edu	37	chr2	74783996	74783996	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggagggctatgagctcCcctacaaccctgccactgat	11	13	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74783996	T	T	74783996	3	4	88	1	0	0	0	0	1	0	0	0	4736	623	22	4	1219	4	DOK1	2	74783996	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	739995	74783996	168415377	59	90724											
TCF7L1	83439	broad.mit.edu	37	chr2	85534779	85534779	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccagggtaagaaaaagaaGaggaagagagaaaagcagct	13	4	0	5			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85534779	C	C	85534779	3	2	88	1	0	0	0	0	1	0	0	0	15819	933	33	4	1314	4	TCF7L1	2	85534779	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	10750783	85534779	157664594	60	90725											
NMS	129521	broad.mit.edu	37	chr2	101098755	101098755	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagcccaggaatggaagaaAcattgaagatgaggcccagt	12	8	1	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101098755	G	G	101098755	3	3	88	1	0	0	0	0	1	0	0	0	10597	43	2	5	465	5	NMS	2	101098755	Missense_Mutation	SNP	A	TCGA-17-Z059-01A-01W-0747-08	15563976	101098755	142100618	61	90726											
CHCHD5	84269	broad.mit.edu	37	chr2	113342073	113342073	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaagaagaggtagggcgcCgccgtgacagattagtccta	15	9	0	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113342073	A	A	113342073	1	1	88	0	1	0	0	0	0	0	0	0	3350	667	23	1		1	CHCHD5	2	113342073	5'UTR	SNP	C	TCGA-17-Z059-01A-01W-0747-08	12243318	113342073	129857300	62	90727											
NCKAP5	344148	broad.mit.edu	37	chr2	133538569	133538570	+	Intron	DNP	CC	AG	AG													ttagcaaacggtagaaagacCccagccagaacatctcagat							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	133538570	AG	AG	133538569	1	1	88	0	1	0	0	0	0	0	0	0	10318	638	22	2		2	NCKAP5	2	133538569	Intron	DNP	CC	TCGA-17-Z059-01A-01W-0747-08	20196496	133538569	109660804	63	90728											
LCT	3938	broad.mit.edu	37	chr2	136566483	136566483	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagggagaactgcagcattCggtcagcggcttccacatct	11	13	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136566483	T	T	136566483	3	4	88	1	0	0	0	0	1	0	0	0	8765	884	31	4	2389	4	LCT	2	136566483	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3027914	136566483	106632890	64	90729											
LRP1B	53353	broad.mit.edu	37	chr2	141128082	141128082	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttcgtgtttgtcatgcccaGattgggattatactctgtct	10	8	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141128082	A	A	141128082	1	1	88	0	1	0	0	0	0	0	0	0	9042	957	33	4		4	LRP1B	2	141128082	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	4561599	141128082	102071291	65	90730											
NMI	9111	broad.mit.edu	37	chr2	152131964	152131964	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaacatgactgaaatggcAgagtgtctgttaaccttcta	9	8	2	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152131964	C	C	152131964	1	2	88	0	1	0	0	0	0	0	0	0	10592	203	7	5		5	NMI	2	152131964	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	11003882	152131964	91067409	66	90731											
PLA2R1	22925	broad.mit.edu	37	chr2	160798506	160798506	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatgctgtgacttggtcctGaaagaagatatttttcttaa	9	5	1	5			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160798506	C	C	160798506	1	2	88	0	1	0	0	0	0	0	0	0	12105	1305	45	4		4	PLA2R1	2	160798506	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	8666542	160798506	82400867	67	90732											
PSMD14	10213	broad.mit.edu	37	chr2	162197490	162197490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatccaagtcctgctcCtcttcctgcctcgcctccac	4	21	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162197490	T	T	162197490	1	4	88	0	1	0	0	0	0	0	0	0	12803	696	24	4		4	PSMD14	2	162197490	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1398984	162197490	81001883	68	90733											
SCN2A	6326	broad.mit.edu	37	chr2	166179748	166179748	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcttcagaggtcgagcaaAggacattggctctgagaatg	13	8	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166179748	G	G	166179748	3	3	88	1	0	0	0	0	1	0	0	0	14029	72	3	5	1892	5	SCN2A	2	166179748	Missense_Mutation	SNP	A	TCGA-17-Z059-01A-01W-0747-08	3982258	166179748	77019625	69	90734											
RAPGEF4	11069	broad.mit.edu	37	chr2	173891853	173891853	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaggcataattttaaaaaGaccacagcaaacttggattt	8	6	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173891853	C	C	173891853	3	2	88	1	0	0	0	0	1	0	0	0	13154	933	33	4	2538	4	RAPGEF4	2	173891853	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7712105	173891853	69307520	70	90735											
TTN	7273	broad.mit.edu	37	chr2	179443484	179443484	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatttataataagaagccTcctcaaaaccgtgttttgct	6	8	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179443484	C	C	179443484	1	2	88	0	1	0	0	0	0	0	0	0	16861	1566	54	5		5	TTN	2	179443484	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	5551631	179443484	63755889	71	90736											
TTN	7273	broad.mit.edu	37	chr2	179449101	179449101	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgaatactcaagacctTctacaaggccagcacaagga	8	10	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179449101	G	G	179449101	3	3	88	1	0	0	0	0	1	0	0	0	16861	1783	62	5	43010	5	TTN	2	179449101	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	5617	179449101	63750272	72	90737											
TTN	7273	broad.mit.edu	37	chr2	179481280	179481280	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggacttcctccatcatcatCaggtggttcccaagtcaaat	7	13	4	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179481280	A	A	179481280	3	1	88	1	0	0	0	0	1	0	0	0	16861	826	29	3	59879	3	TTN	2	179481280	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	32179	179481280	63718093	73	90738											
TTN	7273	broad.mit.edu	37	chr2	179575543	179575543	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctttggcccagctgacCtttatcggttgtgtgcccgt	11	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179575543	T	T	179575543	2	4	88	1	0	0	0	0	0	0	0	1	16861	680	24	4		4	TTN	2	179575543	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	94263	179575543	63623830	74	90739											
TTN	7273	broad.mit.edu	37	chr2	179622365	179622365	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcatgctctgagtaagcatCaactataagcattaaagcca	7	9	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179622365	T	T	179622365	3	4	88	1	0	0	0	0	1	0	0	0	16861	826	29	4	100678	4	TTN	2	179622365	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	46822	179622365	63577008	75	90740											
ANKRD44	91526	broad.mit.edu	37	chr2	197889843	197889843	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtgttactacatttacaTtttaagagcaatctagtttt	5	6	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197889843	C	C	197889843	1	2	88	0	1	0	0	0	0	0	0	0	672	1508	52	5		5	ANKRD44	2	197889843	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	18267478	197889843	45309530	76	90741											
ALS2	57679	broad.mit.edu	37	chr2	202614377	202614377	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaataagaaatggagaagTataaggtgttacagctaaga	10	2	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202614377	C	C	202614377	1	2	88	0	1	0	0	0	0	0	0	0	550	1653	57	5		5	ALS2	2	202614377	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	4724534	202614377	40584996	77	90742											
UGT1A5	54579	broad.mit.edu	37	chr2	234663898	234663898	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccggggtactcccagcacCtcgtagtagtccactatgct	9	14	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234663898	T	T	234663898	1	4	88	0	1	0	0	0	0	0	0	0	17074	696	24	4		4	UGT1A5	2	234663898	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	32049521	234663898	8535475	78	90743											
KIF1A	547	broad.mit.edu	37	chr2	241683446	241683446	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggctggctcttgatgtacTcaatgaaggacttggtcacc	12	9	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241683446	A	A	241683446	3	1	88	1	0	0	0	0	1	0	0	0	8353	1551	54	5	1946	5	KIF1A	2	241683446	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	7019548	241683446	1515927	79	90744											
CPNE9	151835	broad.mit.edu	37	chr3	9768904	9768904	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggagaggctgtggagctgaGaggcacagtgagaagaggct	20	5	0	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9768904	C	C	9768904	1	2	88	0	1	0	0	0	0	0	0	0	3851	957	33	4		4	CPNE9	3	9768904	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		9768904	188253526	80	90745											
PLCL2	23228	broad.mit.edu	37	chr3	17053164	17053164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaggatcaggtgccaaaGgtgatgtggtagatccttat	12	7	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17053164	T	T	17053164	3	4	88	1	0	0	0	0	1	0	0	0	12135	1000	35	2	2326	2	PLCL2	3	17053164	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7284260	17053164	180969266	81	90746											
SCN10A	6336	broad.mit.edu	37	chr3	38760129	38760129	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaaaccccacgtgttccCactgagccactcacattcac	4	20	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38760129	T	T	38760129	1	4	88	0	1	0	0	0	0	0	0	0	14025	609	21	4		4	SCN10A	3	38760129	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	21706965	38760129	159262301	82	90747											
XIRP1	165904	broad.mit.edu	37	chr3	39229587	39229587	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccctgtccaatgctgtcCaagggaagggtctcaaaaag	10	11	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39229587	G	G	39229587	3	3	88	1	0	0	0	0	1	0	0	0	17556	593	21	4	4185	4	XIRP1	3	39229587	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	469458	39229587	158792843	83	90748											
CYP8B1	1582	broad.mit.edu	37	chr3	42916064	42916064	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcttgaagaagtccactttCcggctgccattagggttgag	12	9	1	3	rs147356860		TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42916064	G	G	42916064	2	3	88	1	0	0	0	0	0	0	0	1	4231	842	30	4		4	CYP8B1	3	42916064	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3686477	42916064	155106366	84	90749											
KIF15	56992	broad.mit.edu	37	chr3	44846493	44846493	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcagaaaaaaaaaaaaaaaGactgagattgttttcttatt	5	4	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44846493	A	A	44846493	1	1	88	0	1	0	0	0	0	0	0	0	8347	957	33	4		4	KIF15	3	44846493	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1930429	44846493	153175937	85	90750											
ALS2CL	259173	broad.mit.edu	37	chr3	46722809	46722809	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgtgtacctgaagggctGgggggcctgcggaccactct	16	13	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46722809	A	A	46722809	4	1	88	1	0	0	0	0	0	1	0	0	551	1357	47	4	1554	4	ALS2CL	3	46722809	Nonsense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1876316	46722809	151299621	86	90751											
COL7A1	1294	broad.mit.edu	37	chr3	48604138	48604138	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggaccccaggagccccCaccactctctctccgggggg	12	19	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48604138	A	A	48604138	2	1	88	1	0	0	0	0	0	0	0	1	3736	581	21	2		2	COL7A1	3	48604138	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1881329	48604138	149418292	87	90752											
STAB1	23166	broad.mit.edu	37	chr3	52529465	52529465	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcctcctcccactctgcctCctggccttctgcctggcagg	10	19	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52529465	T	T	52529465	2	4	88	1	0	0	0	0	0	0	0	1	15355	842	30	4		4	STAB1	3	52529465	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3925327	52529465	145492965	88	90753											
CACNA1D	776	broad.mit.edu	37	chr3	53781379	53781379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgacagtcctgtggtccGtgaacggatctggcaaaaca	12	9	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53781379	T	T	53781379	3	4	88	1	0	0	0	0	1	0	0	0	2567	1145	40	3	3492	3	CACNA1D	3	53781379	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1251914	53781379	144241051	89	90754											
PDZRN3	23024	broad.mit.edu	37	chr3	73433080	73433080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcatgtagctctggtaGtgctgggcgtgcgccgggat	17	9	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73433080	T	T	73433080	3	4	88	1	0	0	0	0	1	0	0	0	11803	1020	36	3	567	3	PDZRN3	3	73433080	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	19651701	73433080	124589350	90	90755											
EPHA6	285220	broad.mit.edu	37	chr3	96945208	96945208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaacttctgtctgtcaGtgtgaaaagggttatttccg	11	7	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96945208	T	T	96945208	3	4	88	1	0	0	0	0	1	0	0	0	5213	1020	36	3	1229	3	EPHA6	3	96945208	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	23512128	96945208	101077222	91	90756											
DCBLD2	131566	broad.mit.edu	37	chr3	98518498	98518498	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtgccctgacatgtccatGatgattggggttgcatactc	13	9	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98518498	A	A	98518498	2	1	88	1	0	0	0	0	0	0	0	1	4314	1280	45	4		4	DCBLD2	3	98518498	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1573290	98518498	99503932	92	90757											
NFKBIZ	64332	broad.mit.edu	37	chr3	101573814	101573814	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggatttattttctctctgtGggtttttccctcagtcatag	8	8	4	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101573814	C	C	101573814	1	2	88	0	1	0	0	0	0	0	0	0	10478	1363	47	4		4	NFKBIZ	3	101573814	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3055316	101573814	96448616	93	90758											
CD200	4345	broad.mit.edu	37	chr3	112054897	112054897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctacctatgaagggacttGgttagtaacttctcttgcta	8	10	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112054897	T	T	112054897	1	4	88	0	1	0	0	0	0	0	0	0	3010	1363	47	2		2	CD200	3	112054897	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	10481083	112054897	85967533	94	90759											
STXBP5L	9515	broad.mit.edu	37	chr3	120834022	120834022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatttataatgaatttgaGtgaaaagttcagtaaaataa	6	2	1	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120834022	T	T	120834022	1	4	88	0	1	0	0	0	0	0	0	0	15475	1044	36	3		3	STXBP5L	3	120834022	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	8779125	120834022	77188408	95	90760											
IQCB1	9657	broad.mit.edu	37	chr3	121509047	121509047	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatttatctccagcaacatCtttgatcgtttggatctgtg	7	9	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121509047	T	T	121509047	2	4	88	1	0	0	0	0	0	0	0	1	7873	912	32	4		4	IQCB1	3	121509047	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	675025	121509047	76513383	96	90761											
TMEM22	80723	broad.mit.edu	37	chr3	136573910	136573910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtggagagccacaactaCagtcttcagtgccattttgg	10	9	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136573910	A	A	136573910	3	1	88	1	0	0	0	0	1	0	0	0	16266	478	17	3	610	3	TMEM22	3	136573910	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	15064863	136573910	61448520	97	90762											
IGSF10	285313	broad.mit.edu	37	chr3	151163928	151163928	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctttgttggaagacttcCaggattgtgtgttttggtcg	12	6	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151163928	A	A	151163928	4	1	88	1	0	0	0	0	0	1	0	0	7667	603	21	2	4090	2	IGSF10	3	151163928	Nonsense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	14590018	151163928	46858502	98	90763											
KPNA4	3840	broad.mit.edu	37	chr3	160225999	160225999	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcacaacttgtgcatctTttacagtcagcaagttgcaa	7	10	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160225999	C	C	160225999	3	2	88	1	0	0	0	0	1	0	0	0	8503	1841	64	5	309	5	KPNA4	3	160225999	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	9062071	160225999	37796431	99	90764											
WDR49	151790	broad.mit.edu	37	chr3	167277872	167277872	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttacagtcccatctgtgcTgccagtcaaaagccgagtct	8	13	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167277872	A	A	167277872	3	1	88	1	0	0	0	0	1	0	0	0	17429	1580	55	5	1506	5	WDR49	3	167277872	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	7051873	167277872	30744558	100	90765											
SLC7A14	57709	broad.mit.edu	37	chr3	170184814	170184814	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttactgaaaatcagtcatCaccatttctacccacttgtg	5	11	4	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170184814	G	G	170184814	1	3	88	0	1	0	0	0	0	0	0	0	14810	841	29	4		4	SLC7A14	3	170184814	3'UTR	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2906942	170184814	27837616	101	90766											
PEX5L	51555	broad.mit.edu	37	chr3	179525576	179525576	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggcttcctcgctgcggtctCcgttcgccaaggtcgccccg	12	18	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179525576	T	T	179525576	3	4	88	1	0	0	0	0	1	0	0	0	11844	855	30	4	326	4	PEX5L	3	179525576	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	9340762	179525576	18496854	102	90767											
ATP11B	23200	broad.mit.edu	37	chr3	182554386	182554386	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttttaaaattactatttCaaaaataaaaaggttttaag	4	2	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182554386	T	T	182554386	1	4	88	0	1	0	0	0	0	0	0	0	1124	841	29	4		4	ATP11B	3	182554386	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3028810	182554386	15468044	103	90768											
EHHADH	1962	broad.mit.edu	37	chr3	184910074	184910074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcaggggagggtttccCtgagaagccagtttttttag	12	7	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184910074	A	A	184910074	3	1	88	1	0	0	0	0	1	0	0	0	5022	680	24	2	63	2	EHHADH	3	184910074	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2355688	184910074	13112356	104	90769											
ADD1	118	broad.mit.edu	37	chr4	2886536	2886536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattcctgactacagagtGtaataacctgagaatcagcc	8	10	1	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2886536	T	T	2886536	1	4	88	0	1	0	0	0	0	0	0	0	304	1392	48	3		3	ADD1	4	2886536	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		2886536	188267740	105	90770											
RAB28	9364	broad.mit.edu	37	chr4	13462328	13462328	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtaataacttacttttaTtgcctaccaaggcaaccagt	6	10	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13462328	C	C	13462328	3	2	88	1	0	0	0	0	1	0	0	0	13024	1493	52	5	435	5	RAB28	4	13462328	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	10575792	13462328	177691948	106	90771											
LAP3	51056	broad.mit.edu	37	chr4	17598853	17598853	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgcgtgcagagccccaGaaccatattaggggagggtg	16	8	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17598853	A	A	17598853	1	1	88	0	1	0	0	0	0	0	0	0	8695	957	33	4		4	LAP3	4	17598853	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	4136525	17598853	173555423	107	90772											
SLIT2	9353	broad.mit.edu	37	chr4	20255448	20255448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggggaaagatgcgcggcGttggctggcagatgctgtcc	19	9	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20255448	T	T	20255448	3	4	88	1	0	0	0	0	1	0	0	0	14854	1145	40	3	12	3	SLIT2	4	20255448	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2656595	20255448	170898828	108	90773											
GABRA2	2555	broad.mit.edu	37	chr4	46390669	46390669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctggcagggtcccacaCcaagaaaacaaaaagcagga	9	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46390669	A	A	46390669	3	1	88	1	0	0	0	0	1	0	0	0	6221	507	18	3	1336	3	GABRA2	4	46390669	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	26135221	46390669	144763607	109	90774											
KDR	3791	broad.mit.edu	37	chr4	55955715	55955715	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgagcctgaatcttgcaCatcctcatcacctatgtatc	5	15	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55955715	T	T	55955715	1	4	88	0	1	0	0	0	0	0	0	0	8209	493	17	4		4	KDR	4	55955715	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	9565046	55955715	135198561	110	90775											
LPHN3	23284	broad.mit.edu	37	chr4	62449290	62449290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttcctcacagttaatatGtgatcaaaagcacttttcac	5	10	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62449290	T	T	62449290	1	4	88	0	1	0	0	0	0	0	0	0	9004	1392	48	3		3	LPHN3	4	62449290	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	6493575	62449290	128704986	111	90776											
TECRL	253017	broad.mit.edu	37	chr4	65275095	65275095	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaactaagaggagggtctgtCatgtcaaaagtagaaaattg	12	4	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65275095	A	A	65275095	1	1	88	0	1	0	0	0	0	0	0	0	15868	841	29	3		3	TECRL	4	65275095	5'UTR	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2825805	65275095	125879181	112	90777											
AFF1	4299	broad.mit.edu	37	chr4	88035428	88035428	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtatttgctcctctgcAggacagtgttgtataattgg	12	6	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88035428	T	T	88035428	1	4	88	0	1	0	0	0	0	0	0	0	356	203	7	5		5	AFF1	4	88035428	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	22760333	88035428	103118848	113	90778											
GRID2	2895	broad.mit.edu	37	chr4	94690699	94690699	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataatgggttgggggtggtcCttgttttttcgtttcttgaa	13	4	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94690699	T	T	94690699	1	4	88	0	1	0	0	0	0	0	0	0	6838	696	24	4		4	GRID2	4	94690699	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	6655271	94690699	96463577	114	90779											
PAPSS1	9061	broad.mit.edu	37	chr4	108603415	108603415	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaagccacagggctatagTaatgaagcatctttcttggg	10	10	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108603415	A	A	108603415	1	1	88	0	1	0	0	0	0	0	0	0	11528	1653	57	5		5	PAPSS1	4	108603415	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	13912716	108603415	82550861	115	90780											
MAD2L1	4085	broad.mit.edu	37	chr4	120981278	120981278	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctcatgtcatcctcagtCattgacaggaattttgtagg	8	9	4	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120981278	T	T	120981278	3	4	88	1	0	0	0	0	1	0	0	0	9236	826	29	4	8	4	MAD2L1	4	120981278	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	12377863	120981278	70172998	116	90781											
MAD2L1	4085	broad.mit.edu	37	chr4	120981464	120981464	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctaaattggggataagatCattgaagtatattattttct	7	4	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120981464	T	T	120981464	1	4	88	0	1	0	0	0	0	0	0	0	9236	841	29	4		4	MAD2L1	4	120981464	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	186	120981464	70172812	117	90782											
TDO2	6999	broad.mit.edu	37	chr4	156841072	156841072	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gataccgaagatgaacccaaCcattcacaaatttctatata	4	10	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156841072	G	G	156841072	3	3	88	1	0	0	0	0	1	0	0	0	15849	507	18	4	1197	4	TDO2	4	156841072	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	35859608	156841072	34313204	118	90783											
C4orf41	60684	broad.mit.edu	37	chr4	184615050	184615050	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaattctttgttttgaagaAccaatattaactcttttagg	6	5	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184615050	G	G	184615050	1	3	88	0	1	0	0	0	0	0	0	0	2293	58	2	5		5	C4orf41	4	184615050	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	27773978	184615050	6539226	119	90784											
IRF2	3660	broad.mit.edu	37	chr4	185329579	185329579	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccctgcttctttaaactgGcctgttttaaagcacatttc	5	12	1	0	rs151286722	by1000genomes	TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185329579	C	C	185329579	1	2	88	0	1	0	0	0	0	0	0	0	7898	1218	42	4		4	IRF2	4	185329579	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	714529	185329579	5824697	120	90785											
MED10	84246	broad.mit.edu	37	chr5	6377163	6377163	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactggcacatccccagcacCcaggctgtgcctaccacaca	7	19	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6377163	T	T	6377163	1	4	88	0	1	0	0	0	0	0	0	0	9519	638	22	4		4	MED10	5	6377163	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08		6377163	174538097	121	90786											
CTNND2	1501	broad.mit.edu	37	chr5	11111166	11111166	+	Intron	DEL	G	-	-													tttcaacggtctgcagaaaaGggggaaacagaggaaagaat							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11111166	-	-	11111166	6	5	88	0	1	1	0	1	0	0	0	0	4054	1015	35	0		0	CTNND2	5	11111166	Intron	DEL	G	TCGA-17-Z059-01A-01W-0747-08	4734003	11111166	169804094	122	90787											
CDH9	1007	broad.mit.edu	37	chr5	26906096	26906096	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatcgaggagggttgttgttGacatctgtcagcgtgatgtt	14	5	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26906096	A	A	26906096	2	1	88	1	0	0	0	0	0	0	0	1	3147	1277	45	4		4	CDH9	5	26906096	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	15794930	26906096	154009164	123	90788											
ZFR	51663	broad.mit.edu	37	chr5	32387678	32387678	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagctgtttgggtaggttttCtgcaatacggcttaataatg	11	5	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32387678	G	G	32387678	3	3	88	1	0	0	0	0	1	0	0	0	17785	922	32	4	776	4	ZFR	5	32387678	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5481582	32387678	148527582	124	90789											
EGFLAM	133584	broad.mit.edu	37	chr5	38425323	38425323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggctccctctcttaccCaggccggagtgcagtggcgc	12	15	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38425323	A	A	38425323	1	1	88	0	1	0	0	0	0	0	0	0	5006	609	21	2		2	EGFLAM	5	38425323	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	6037645	38425323	142489937	125	90790											
GPX8	493869	broad.mit.edu	37	chr5	54456954	54456954	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccctgcaatcagtttggaGaatcggagccccgcccaagc	10	14	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54456954	A	A	54456954	3	1	88	1	0	0	0	0	1	0	0	0	6812	943	33	4	343	4	GPX8	5	54456954	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	16031631	54456954	126458306	126	90791											
IL31RA	133396	broad.mit.edu	37	chr5	55147355	55147355	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtgtgcagtatgaaaattGagacaggaaggcagagtgtc	15	4	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55147355	T	T	55147355	1	4	88	0	1	0	0	0	0	0	0	0	7761	1305	45	3		3	IL31RA	5	55147355	5'UTR	SNP	G	TCGA-17-Z059-01A-01W-0747-08	690401	55147355	125767905	127	90792											
ADAMTS6	11174	broad.mit.edu	37	chr5	64484034	64484034	+	Frame_Shift_Del	DEL	C	-	-													cttgctgcattccaaccaatCcccaatgaaccacctgcagc							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64484034	-	-	64484034	7	5	88	1	0	1	0	1	0	0	0	0	270	855	30	0	650	0	ADAMTS6	5	64484034	Frame_Shift_Del	DEL	C	TCGA-17-Z059-01A-01W-0747-08	9336679	64484034	116431226	128	90793											
CENPK	64105	broad.mit.edu	37	chr5	64850830	64850830	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgaacacttattacctgcCagatactcatctagggggta	9	9	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64850830	T	T	64850830	1	4	88	0	1	0	0	0	0	0	0	0	3265	609	21	4		4	CENPK	5	64850830	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	366796	64850830	116064430	129	90794											
GPR98	84059	broad.mit.edu	37	chr5	90327117	90327117	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtctcattgatttcaaacAtagtaaaatgctgctgcact	6	8	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90327117	T	T	90327117	1	4	88	0	1	0	0	0	0	0	0	0	6787	232	8	5		5	GPR98	5	90327117	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	25476287	90327117	90588143	130	90795											
SLCO6A1	133482	broad.mit.edu	37	chr5	101815809	101815809	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaataattatcacagtctAttttaagttccttgagccaa	4	8	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101815809	G	G	101815809	1	3	88	0	1	0	0	0	0	0	0	0	14846	464	16	5		5	SLCO6A1	5	101815809	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	11488692	101815809	79099451	131	90796											
AQPEP	206338	broad.mit.edu	37	chr5	115310986	115310986	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtaggttacacttctcAggctgacaaagttattcatt	7	9	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115310986	T	T	115310986	1	4	88	0	1	0	0	0	0	0	0	0	836	203	7	5		5	AQPEP	5	115310986	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	13495177	115310986	65604274	132	90797											
ACSL6	23305	broad.mit.edu	37	chr5	131310609	131310609	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattactctctcaaacatgtGagccagaggcaggaaggaga	12	8	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131310609	C	C	131310609	1	2	88	0	1	0	0	0	0	0	0	0	181	1290	45	4		4	ACSL6	5	131310609	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	15999623	131310609	49604651	133	90798											
MATR3	9782	broad.mit.edu	37	chr5	138643962	138643962	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacttccatggactcttaccGaagggttatccccatctgtg	9	12	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138643962	A	A	138643962	2	1	88	1	0	0	0	0	0	0	0	1	9429	1045	37	4		4	MATR3	5	138643962	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7333353	138643962	42271298	134	90799											
PCDHA10	56139	broad.mit.edu	37	chr5	140236705	140236705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttctctgtctctcccaGtgaaagaagatgctcaagtg	8	11	4	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140236705	T	T	140236705	3	4	88	1	0	0	0	0	1	0	0	0	11614	1029	36	3	1074	3	PCDHA10	5	140236705	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1592743	140236705	40678555	135	90800											
PCDHB2	56133	broad.mit.edu	37	chr5	140476015	140476015	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgttgagcagcgaggcGctggtgcgcgtgctggtgct	19	11	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140476015	T	T	140476015	2	4	88	1	0	0	0	0	0	0	0	1	11636	1074	38	3		3	PCDHB2	5	140476015	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	239310	140476015	40439245	136	90801											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730889	140730889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctaaccagattccagaGgattcagaccttggaactgt	8	10	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140730889	T	T	140730889	3	4	88	1	0	0	0	0	1	0	0	0	11656	991	35	2	1064	2	PCDHGB1	5	140730889	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	254874	140730889	40184371	137	90802											
LARS	51520	broad.mit.edu	37	chr5	145503526	145503526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagttaactggttattaCaatccctggccctcttacct	5	13	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145503526	A	A	145503526	1	1	88	0	1	0	0	0	0	0	0	0	8706	493	17	3		3	LARS	5	145503526	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	4772637	145503526	35411734	138	90803											
PPARGC1B	133522	broad.mit.edu	37	chr5	149214717	149214717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgggatggggtttcccCcagagcgaatgcatctcagg	14	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149214717	A	A	149214717	1	1	88	0	1	0	0	0	0	0	0	0	12397	638	22	2		2	PPARGC1B	5	149214717	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3711191	149214717	31700543	139	90804											
CSF1R	1436	broad.mit.edu	37	chr5	149460352	149460352	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacatagaggtggatggcGgcgctgcctcccagggggtc	17	10	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149460352	T	T	149460352	2	4	88	1	0	0	0	0	0	0	0	1	3966	1103	39	1		1	CSF1R	5	149460352	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	245635	149460352	31454908	140	90805											
HAVCR1	26762	broad.mit.edu	37	chr5	156479602	156479602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttgtcgttggaacagtgGtgctcgttcgaacagtcgtg	14	8	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156479602	T	T	156479602	3	4	88	1	0	0	0	0	1	0	0	0	7039	1261	44	3	675	3	HAVCR1	5	156479602	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7019250	156479602	24435658	141	90806											
ADAM19	8728	broad.mit.edu	37	chr5	156945916	156945916	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaagaaagagaaacagatCagcgctgtagaaatagtgga	11	5	2	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156945916	A	A	156945916	1	1	88	0	1	0	0	0	0	0	0	0	240	841	29	3		3	ADAM19	5	156945916	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	466314	156945916	23969344	142	90807											
KDM1B	221656	broad.mit.edu	37	chr6	18197274	18197274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaagcagtttggttttAtttccaaacacaggaagctc	7	7	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18197274	T	T	18197274	1	4	88	0	1	0	0	0	0	0	0	0	8193	464	16	5		5	KDM1B	6	18197274	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08		18197274	152917793	143	90808											
CDKAL1	54901	broad.mit.edu	37	chr6	20722526	20722526	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccactgaaccttccctcaAgattttattgtcttcataat	3	13	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20722526	T	T	20722526	1	4	88	0	1	0	0	0	0	0	0	0	3182	87	3	5		5	CDKAL1	6	20722526	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	2525252	20722526	150392541	144	90809											
FKSG83	83954	broad.mit.edu	37	chr6	27293323	27293323	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaatcttttcctgaaacaGaagccagtcatgttttcttc	5	11	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27293323	A	A	27293323	3	1	88	1	0	0	0	0	1	0	0	0	5975	943	33	4	264	4	FKSG83	6	27293323	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	6570797	27293323	143821744	145	90810											
ZNF192	7745	broad.mit.edu	37	chr6	28121477	28121477	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtgggaaaaccttcaggcgGagctcacatcttattggtca	11	9	4	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28121477	C	C	28121477	2	2	88	1	0	0	0	0	0	0	0	1	17882	1161	41	4		4	ZNF192	6	28121477	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	828154	28121477	142993590	146	90811											
GPX6	257202	broad.mit.edu	37	chr6	28474017	28474017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagaagtttccagaataGgcaggcatctaggtggaatg	12	8	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28474017	T	T	28474017	1	4	88	0	1	0	0	0	0	0	0	0	6810	1015	35	2		2	GPX6	6	28474017	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	352540	28474017	142641050	147	90812											
GABBR1	2550	broad.mit.edu	37	chr6	29542250	29542251	+	Intron	DNP	CC	AA	AA													actctcctgtgaagacacctCctacaatgagatccagatgg							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	29542251	AA	AA	29542250	1	1	88	0	1	0	0	0	0	0	0	0	6215	870	30	3		3	GABBR1	6	29542250	Intron	DNP	CC	TCGA-17-Z059-01A-01W-0747-08	1068233	29542250	141572817	148	90813											
ITPR3	3710	broad.mit.edu	37	chr6	33626578	33626578	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggctcttcatccagcccttCtggaagctgcggagcaacgg	12	13	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33626578	T	T	33626578	2	4	88	1	0	0	0	0	0	0	0	1	7992	912	32	4		4	ITPR3	6	33626578	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	4084328	33626578	137488489	149	90814											
MLN	4295	broad.mit.edu	37	chr6	33768704	33768704	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggcgtgaaggtggccagaGaggtggctggaactgggggt	21	5	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33768704	C	C	33768704	1	2	88	0	1	0	0	0	0	0	0	0	9724	957	33	4		4	MLN	6	33768704	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	142126	33768704	137346363	150	90815											
MTCH1	23787	broad.mit.edu	37	chr6	36936707	36936707	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcaaagcatgatcctgatGacacccggcggaaaagcagg	14	10	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36936707	A	A	36936707	3	1	88	1	0	0	0	0	1	0	0	0	10007	1294	45	4	31	4	MTCH1	6	36936707	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3168003	36936707	134178360	151	90816											
TINAG	27283	broad.mit.edu	37	chr6	54173273	54173273	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttaatgactagaattcaGgttccaaggagaagcccaca	9	9	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54173273	T	T	54173273	1	4	88	1	0	0	0	0	0	0	0	0	16044	1015	35	2		2	TINAG	6	54173273	Translation_Start_Site	SNP	G	TCGA-17-Z059-01A-01W-0747-08	17236566	54173273	116941794	152	90817											
DST	667	broad.mit.edu	37	chr6	56716174	56716174	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttcccccactccatcCccttccccagatgctcttac	2	22	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56716174	G	G	56716174	1	3	88	0	1	0	0	0	0	0	0	0	4823	638	22	4		4	DST	6	56716174	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2542901	56716174	114398893	153	90818											
PRIM2	5558	broad.mit.edu	37	chr6	57467291	57467291	+	Intron	DEL	G	-	-													aaacaatgttgtggctttttGcattcctgtcaagacctagt							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57467291	-	-	57467291	6	5	88	0	1	1	0	1	0	0	0	0	12597	1334	46	0		0	PRIM2	6	57467291	Intron	DEL	G	TCGA-17-Z059-01A-01W-0747-08	751117	57467291	113647776	154	90819											
FILIP1	27145	broad.mit.edu	37	chr6	76024430	76024430	+	Frame_Shift_Del	DEL	T	-	-													cttctgccatgaggctagagTttccacattctcctttggca							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76024430	-	-	76024430	7	5	88	1	0	1	0	1	0	0	0	0	5951	1725	60	0	2531	0	FILIP1	6	76024430	Frame_Shift_Del	DEL	T	TCGA-17-Z059-01A-01W-0747-08	18557139	76024430	95090637	155	90820											
CYB5R4	51167	broad.mit.edu	37	chr6	84645991	84645991	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtatctggttccttactctCagagttcaaggaaccagttc	8	10	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84645991	T	T	84645991	3	4	88	1	0	0	0	0	1	0	0	0	4162	838	29	4	1050	4	CYB5R4	6	84645991	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	8621561	84645991	86469076	156	90821											
ZNF292	23036	broad.mit.edu	37	chr6	87967629	87967629	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgccagcatgattctcTccacaaatgcagtaaatttg	6	10	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87967629	G	G	87967629	3	3	88	1	0	0	0	0	1	0	0	0	17952	1551	54	5	4312	5	ZNF292	6	87967629	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	3321638	87967629	83147438	157	90822											
MDN1	23195	broad.mit.edu	37	chr6	90387449	90387449	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatttctttaagcaaagaTgcttagtagagaatggatgt	10	4	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90387449	A	A	90387449	1	1	88	0	1	0	0	0	0	0	0	0	9508	1479	51	5		5	MDN1	6	90387449	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	2419820	90387449	80727618	158	90823											
RADIL	55698	broad.mit.edu	37	chr7	4917272	4917272	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctccttggctgccagctCctccacgtccgacctcttcc	6	21	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4917272	A	A	4917272	4	1	88	1	0	0	0	0	0	1	0	0	13105	864	30	3	2784	3	RADIL	7	4917272	Nonsense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08		4917272	154221391	159	90824											
THSD7A	221981	broad.mit.edu	37	chr7	11452406	11452406	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatcagctgacctttgccGgaaactgctttgattgcaag	12	9	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11452406	A	A	11452406	3	1	88	1	0	0	0	0	1	0	0	0	16002	1115	39	4	1458	4	THSD7A	7	11452406	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	6535134	11452406	147686257	160	90825											
ABCB5	340273	broad.mit.edu	37	chr7	20687597	20687597	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttttccaagaaacccAgtatagataacttttccaca	4	9	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20687597	T	T	20687597	1	4	88	0	1	0	0	0	0	0	0	0	44	188	7	5		5	ABCB5	7	20687597	5'UTR	SNP	A	TCGA-17-Z059-01A-01W-0747-08	9235191	20687597	138451066	161	90826											
CCDC129	223075	broad.mit.edu	37	chr7	31691050	31691050	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctttctcagtgggagtctgTgagagccatttgctagatag	13	7	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31691050	A	A	31691050	1	1	88	0	1	0	0	0	0	0	0	0	2790	1711	59	5		5	CCDC129	7	31691050	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	11003453	31691050	127447613	162	90827											
C7orf16	10842	broad.mit.edu	37	chr7	31736763	31736763	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcagggcatttgcagggGgtgatggggacaggtcaaga	20	5	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31736763	A	A	31736763	1	1	88	0	1	0	0	0	0	0	0	0	2403	1247	43	4		4	C7orf16	7	31736763	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	45713	31736763	127401900	163	90828											
ELMO1	9844	broad.mit.edu	37	chr7	37311327	37311327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcaggacattctggaagCcttttgctttgcactaaagt	9	8	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37311327	A	A	37311327	1	1	88	0	1	0	0	0	0	0	0	0	5107	754	26	3		3	ELMO1	7	37311327	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5574564	37311327	121827336	164	90829											
AMPH	273	broad.mit.edu	37	chr7	38462015	38462015	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagcacaaacccaaatcaActtaccaagttgcagatcat	6	11	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38462015	T	T	38462015	1	4	88	0	1	0	0	0	0	0	0	0	588	58	2	5		5	AMPH	7	38462015	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	1150688	38462015	120676648	165	90830											
PKD1L1	168507	broad.mit.edu	37	chr7	47842873	47842873	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaggatgccattgtgttttGaatgccaggaagatagacgc	13	7	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47842873	C	C	47842873	3	2	88	1	0	0	0	0	1	0	0	0	12059	1299	45	4	672	4	PKD1L1	7	47842873	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	9380858	47842873	111295790	166	90831											
ABCA13	154664	broad.mit.edu	37	chr7	48315097	48315097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctctgaactctgtcctaGtggttccataaagcaagttg	8	10	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48315097	T	T	48315097	3	4	88	1	0	0	0	0	1	0	0	0	31	1029	36	3	5729	3	ABCA13	7	48315097	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	472224	48315097	110823566	167	90832											
TRRAP	8295	broad.mit.edu	37	chr7	98488042	98488042	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctccaagatggagaagttCagtttcttcaggagaaacca	9	8	4	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98488042	A	A	98488042	3	1	88	1	0	0	0	0	1	0	0	0	16726	827	29	3	245	3	TRRAP	7	98488042	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	50172945	98488042	60650621	168	90833											
SLC26A5	375611	broad.mit.edu	37	chr7	103038548	103038548	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaataatatgttagtcaagtCaaatctattctcacttttaa	3	6	4	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103038548	G	G	103038548	1	3	88	0	1	0	0	0	0	0	0	0	14634	841	29	4		4	SLC26A5	7	103038548	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	4550506	103038548	56100115	169	90834											
RELN	5649	broad.mit.edu	37	chr7	103275910	103275910	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatatgaataatgctccagGagtttccaagttatcccatt	7	8	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103275910	T	T	103275910	2	4	88	1	0	0	0	0	0	0	0	1	13328	1161	41	3		3	RELN	7	103275910	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	237362	103275910	55862753	170	90835											
DGKI	9162	broad.mit.edu	37	chr7	137407157	137407157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgtgagaaaactgcgagCcagcattacccccgggacca	11	14	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137407157	A	A	137407157	1	1	88	0	1	0	0	0	0	0	0	0	4511	754	26	3		3	DGKI	7	137407157	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	34131247	137407157	21731506	171	90836											
PRSS1	5644	broad.mit.edu	37	chr7	142458267	142458267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggcagtgatgatcaccaGgggtggcagagctccctccc	13	13	1	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142458267	T	T	142458267	1	4	88	0	1	0	0	0	0	0	0	0	12720	1015	35	2		2	PRSS1	7	142458267	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	5051110	142458267	16680396	172	90837											
TAS2R40	259286	broad.mit.edu	37	chr7	142920108	142920108	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggaagcggtttcagcacCaagttcctctttacctaaaa	7	12	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142920108	G	G	142920108	3	3	88	1	0	0	0	0	1	0	0	0	15697	595	21	4	939	4	TAS2R40	7	142920108	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	461841	142920108	16218555	173	90838											
GALNTL5	168391	broad.mit.edu	37	chr7	151684459	151684459	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagggagaccttctatgtcTgtgtctgcttcatcagaaga	11	9	5	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151684459	A	A	151684459	1	1	88	0	1	0	0	0	0	0	0	0	6286	1595	55	5		5	GALNTL5	7	151684459	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	8764351	151684459	7454204	174	90839											
TNFRSF10D	8793	broad.mit.edu	37	chr8	23012510	23012510	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacctgtggggacaaggcagAgatgggcttgagtggcttcc	17	8	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23012510	C	C	23012510	1	2	88	0	1	0	0	0	0	0	0	0	16406	319	11	5		5	TNFRSF10D	8	23012510	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08		23012510	123351512	175	90840											
EXTL3	2137	broad.mit.edu	37	chr8	28574377	28574377	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattccctgccacactggcgGacggatggacacaaccatgt	10	13	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28574377	T	T	28574377	2	4	88	1	0	0	0	0	0	0	0	1	5370	1161	41	3		3	EXTL3	8	28574377	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	5561867	28574377	117789645	176	90841											
UNC5D	137970	broad.mit.edu	37	chr8	35606026	35606026	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacatacttctctcttctatCcttttttcaactgtgaagcc	3	12	4	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35606026	T	T	35606026	1	4	88	0	1	0	0	0	0	0	0	0	17121	870	30	4		4	UNC5D	8	35606026	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	7031649	35606026	110757996	177	90842											
KCNU1	157855	broad.mit.edu	37	chr8	36746058	36746058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgacatttacaagatctGggagatcacaaatgggctgt	10	8	3	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36746058	T	T	36746058	1	4	88	0	1	0	0	0	0	0	0	0	8163	1363	47	2		2	KCNU1	8	36746058	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1140032	36746058	109617964	178	90843											
SNTG1	54212	broad.mit.edu	37	chr8	51351125	51351125	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaacggtgaccatcagaaGacaaacagtaggaggatttg	12	6	1	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51351125	T	T	51351125	3	4	88	1	0	0	0	0	1	0	0	0	14988	942	33	3	195	3	SNTG1	8	51351125	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	14605067	51351125	95012897	179	90844											
PXDNL	137902	broad.mit.edu	37	chr8	52336131	52336131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaatggagctatagacacCtacccgtgactgtaagaaac	9	9	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52336131	A	A	52336131	1	1	88	0	1	0	0	0	0	0	0	0	12956	696	24	2		2	PXDNL	8	52336131	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	985006	52336131	94027891	180	90845											
ST18	9705	broad.mit.edu	37	chr8	53084452	53084452	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctatccagctctttgtaGgtgttatggaaaacacaacc	7	10	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53084452	T	T	53084452	2	4	88	1	0	0	0	0	0	0	0	1	15330	987	35	2		2	ST18	8	53084452	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	748321	53084452	93279570	181	90846											
CNBD1	168975	broad.mit.edu	37	chr8	87878645	87878645	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggaccttgaagttctgcTttatgagcctgcaggcaaag	12	8	1	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87878645	C	C	87878645	1	2	88	0	1	0	0	0	0	0	0	0	3623	1624	56	5		5	CNBD1	8	87878645	5'Flank	SNP	T	TCGA-17-Z059-01A-01W-0747-08	34794193	87878645	58485377	182	90847											
MMP16	4325	broad.mit.edu	37	chr8	89053605	89053605	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacaagcctgctcctagcTaggaaacagcataacagctc	8	14	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89053605	C	C	89053605	1	2	88	0	1	0	0	0	0	0	0	0	9748	1537	53	5		5	MMP16	8	89053605	3'UTR	SNP	T	TCGA-17-Z059-01A-01W-0747-08	1174960	89053605	57310417	183	90848											
TMEM55A	55529	broad.mit.edu	37	chr8	92008881	92008881	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatcaaagtgtaacactcaCagttaacccaactccaatga	4	12	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92008881	G	G	92008881	5	3	88	1	0	0	0	0	0	0	1	0	16304	492	17	4	150	4	TMEM55A	8	92008881	Splice_Site	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2955276	92008881	54355141	184	90849											
DPY19L4	286148	broad.mit.edu	37	chr8	95773908	95773908	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttattgatatttagtttCtttcatttgttttccctaga	5	5	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95773908	T	T	95773908	1	4	88	0	1	0	0	0	0	0	0	0	4783	928	32	4		4	DPY19L4	8	95773908	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3765027	95773908	50590114	185	90850											
SNTB1	6641	broad.mit.edu	37	chr8	121561202	121561203	+	Intron	DEL	GA	-	-													gacctgaatggaccagcctgGagagagagagagagagacat							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121561203	-	-	121561202	6	5	88	0	1	1	0	1	0	0	0	0	14986	1189	41	0		0	SNTB1	8	121561202	Intron	DEL	GA	TCGA-17-Z059-01A-01W-0747-08	25787294	121561202	24802820	186	90851											
ATAD2	29028	broad.mit.edu	37	chr8	124368698	124368698	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcgtcaaaaaaaataattGatgggcgcatctgataggcc	9	7	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124368698	C	C	124368698	4	2	88	1	0	0	0	0	0	1	0	0	1075	1294	45	4	2659	4	ATAD2	8	124368698	Nonsense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2807496	124368698	21995324	187	90852											
TATDN1	83940	broad.mit.edu	37	chr8	125551294	125551294	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagcgactcatgactgcGcatggaggacctccccagcg	12	13	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125551294	C	C	125551294	1	2	88	0	1	0	0	0	0	0	0	0	15710	1102	38	4		4	TATDN1	8	125551294	5'UTR	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1182596	125551294	20812728	188	90853											
ELAVL2	1993	broad.mit.edu	37	chr9	23693598	23693598	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgtacactgattatatgTgaagactcagaatgctgggt	10	6	2	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23693598	G	G	23693598	1	3	88	0	1	0	0	0	0	0	0	0	5092	1711	59	5		5	ELAVL2	9	23693598	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08		23693598	117519833	189	90854											
UNC13B	10497	broad.mit.edu	37	chr9	35328635	35328635	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttccttccttcctTccttccttccttccttcctt	0	20	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35328635	C	C	35328635	1	2	88	0	1	0	0	0	0	0	0	0	17111	1798	62	5		5	UNC13B	9	35328635	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	11635037	35328635	105884796	190	90855											
UNC13B	10497	broad.mit.edu	37	chr9	35328651	35328651	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttccttccttcctTccttccttcctccctccctt	0	22	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35328651	C	C	35328651	1	2	88	0	1	0	0	0	0	0	0	0	17111	1798	62	5		5	UNC13B	9	35328651	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	16	35328651	105884780	191	90856											
FAM75A6	389730	broad.mit.edu	37	chr9	43629383	43629383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaagatgacaatgggagaCaagaaagggcgagaagctag	15	5	0	5			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43629383	A	A	43629383	1	1	88	0	1	0	0	0	0	0	0	0	5674	493	17	3		3	FAM75A6	9	43629383	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	8300732	43629383	97584048	192	90857											
FGD3	89846	broad.mit.edu	37	chr9	95766312	95766312	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accaggctgacggatgcgggGatccctccagaagtcatcat	12	12	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95766312	C	C	95766312	2	2	88	1	0	0	0	0	0	0	0	1	5891	1161	41	4		4	FGD3	9	95766312	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	52136929	95766312	45447119	193	90858											
HEMGN	55363	broad.mit.edu	37	chr9	100700349	100700349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcattacctggagaatGgttctcttcttgatgagggt	10	6	3	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100700349	T	T	100700349	3	4	88	1	0	0	0	0	1	0	0	0	7117	1348	47	2	1400	2	HEMGN	9	100700349	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	4934037	100700349	40513082	194	90859											
RNF20	56254	broad.mit.edu	37	chr9	104319708	104319708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggatgtcacaggccagGcctttgaagacatgcaggag	13	8	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104319708	T	T	104319708	3	4	88	1	0	0	0	0	1	0	0	0	13584	1203	42	3	2270	3	RNF20	9	104319708	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3619359	104319708	36893723	195	90860											
LARP4B	23185	broad.mit.edu	37	chr10	930364	930364	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgtgattaaaaaatctgtGattaatctcaaaattgaatt	5	4	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	930364	C	C	930364	1	2	88	0	1	0	0	0	0	0	0	0	8703	1305	45	4		4	LARP4B	10	930364	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		930364	134604383	196	90861											
ITIH5	80760	broad.mit.edu	37	chr10	7604929	7604929	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgctgcaccaggggtgggtCatggagtccagctaattgcc	14	10	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7604929	A	A	7604929	1	1	88	0	1	0	0	0	0	0	0	0	7977	841	29	3		3	ITIH5	10	7604929	3'UTR	SNP	C	TCGA-17-Z059-01A-01W-0747-08	6674565	7604929	127929818	197	90862											
PCDH15	65217	broad.mit.edu	37	chr10	55582403	55582403	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaagttccaaggaacactCagcaggagaactgatgacat	10	8	1	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55582403	T	T	55582403	3	4	88	1	0	0	0	0	1	0	0	0	11605	835	29	4	2394	4	PCDH15	10	55582403	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	47977474	55582403	79952344	198	90863											
P4HA1	5033	broad.mit.edu	37	chr10	74813242	74813242	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatccagttgccttagGgcttgttccatccacagttc	7	14	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74813242	A	A	74813242	2	1	88	1	0	0	0	0	0	0	0	1	11450	1219	43	4		4	P4HA1	10	74813242	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	19230839	74813242	60721505	199	90864											
DLG5	9231	broad.mit.edu	37	chr10	79571905	79571905	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggagcactgctgttccctAggaggaggagagggggaaga	19	6	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79571905	T	T	79571905	1	4	88	0	1	0	0	0	0	0	0	0	4598	435	15	5		5	DLG5	10	79571905	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	4758663	79571905	55962842	200	90865											
LGI1	9211	broad.mit.edu	37	chr10	95552914	95552914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaagaggtattagctcaCagttacttattatttcctat	7	6	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95552914	A	A	95552914	1	1	88	0	1	0	0	0	0	0	0	0	8823	493	17	3		3	LGI1	10	95552914	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	15981009	95552914	39981833	201	90866											
CYP2C18	1562	broad.mit.edu	37	chr10	96484123	96484123	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaaagtccaggaagagattGaatgtgtagttggcagaaac	12	5	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96484123	C	C	96484123	3	2	88	1	0	0	0	0	1	0	0	0	4198	1291	45	4	1008	4	CYP2C18	10	96484123	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	931209	96484123	39050624	202	90867											
SORBS1	10580	broad.mit.edu	37	chr10	97127357	97127357	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacttctctcttcccatttCtgacatttaacatagtaagc	3	11	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97127357	T	T	97127357	1	4	88	0	1	0	0	0	0	0	0	0	15041	928	32	4		4	SORBS1	10	97127357	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	643234	97127357	38407390	203	90868											
MMS19	64210	broad.mit.edu	37	chr10	99240761	99240761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgacaaaagctggattgctCgtgcccgagttcggggttct	14	9	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99240761	A	A	99240761	3	1	88	1	0	0	0	0	1	0	0	0	9766	884	31	3	3008	3	MMS19	10	99240761	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2113404	99240761	36293986	204	90869											
HABP2	3026	broad.mit.edu	37	chr10	115335608	115335608	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatttggaggggggcgcttCtcacctgcctttccttacca	10	12	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115335608	T	T	115335608	1	4	88	0	1	0	0	0	0	0	0	0	7004	928	32	4		4	HABP2	10	115335608	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	16094847	115335608	20199139	205	90870											
PDZD8	118987	broad.mit.edu	37	chr10	119043306	119043306	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accacagacctccgtgtcacTgccttcgttgtctgacgtgt	9	14	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119043306	C	C	119043306	3	2	88	1	0	0	0	0	1	0	0	0	11799	1580	55	5	530	5	PDZD8	10	119043306	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	3707698	119043306	16491441	206	90871											
PHRF1	57661	broad.mit.edu	37	chr11	592723	592723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgctgcgtgcaaggcgGgccaggcgcaggagggatgc	19	12	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	592723	T	T	592723	1	4	88	0	1	0	0	0	0	0	0	0	11956	1247	43	2		2	PHRF1	11	592723	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		592723	134413793	207	90872											
STIM1	6786	broad.mit.edu	37	chr11	4104029	4104029	+	Intron	DEL	C	-	-													gttgtgctaggaggagtgggCcccagccataggggaaggcc							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4104029	-	-	4104029	6	5	88	0	1	1	0	1	0	0	0	0	15401	754	26	0		0	STIM1	11	4104029	Intron	DEL	C	TCGA-17-Z059-01A-01W-0747-08	3511306	4104029	130902487	208	90873											
OR52R1	119695	broad.mit.edu	37	chr11	4825678	4825678	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgataacaatcaaaacaaGtgttattattatatacaagg	6	4	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4825678	C	C	4825678	3	2	88	1	0	0	0	0	1	0	0	0	11225	1044	36	4		4	OR52R1	11	4825678	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	721649	4825678	130180838	209	90874											
TRIM22	10346	broad.mit.edu	37	chr11	5729732	5729732	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attccccctttcctttccctActctggagaagagacaggtg	8	13	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5729732	T	T	5729732	1	4	88	0	1	0	0	0	0	0	0	0	16620	406	14	5		5	TRIM22	11	5729732	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	904054	5729732	129276784	210	90875											
FAM160A2	84067	broad.mit.edu	37	chr11	6244719	6244719	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagggggctgctttcaaatCcaggaactgtttcctagggg	13	10	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6244719	A	A	6244719	1	1	88	0	1	0	0	0	0	0	0	0	5515	870	30	3		3	FAM160A2	11	6244719	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	514987	6244719	128761797	211	90876											
LRRC4C	57689	broad.mit.edu	37	chr11	40136654	40136654	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatccgcactttgtacgcccCatgtgtcatgactgttccat	7	13	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40136654	G	G	40136654	3	3	88	1	0	0	0	0	1	0	0	0	9095	594	21	4	737	4	LRRC4C	11	40136654	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	33891935	40136654	94869862	212	90877											
OR4P4	81300	broad.mit.edu	37	chr11	55406524	55406524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcatactctgcagagagaCgcagcaaagctcttgccact	10	12	2	2	rs61896975	by1000genomes	TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55406524	A	A	55406524	3	1	88	1	0	0	0	0	1	0	0	0	11174	536	19	3	693	3	OR4P4	11	55406524	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	15269870	55406524	79599992	213	90878											
OR8J3	81168	broad.mit.edu	37	chr11	55904638	55904638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtatcagagcaagataatGctaacagaggtgcaatatca	9	6	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904638	T	T	55904638	3	4	88	1	0	0	0	0	1	0	0	0	11336	1319	46	3	392	3	OR8J3	11	55904638	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	498114	55904638	79101878	214	90879											
OR8J1	219477	broad.mit.edu	37	chr11	56128288	56128288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctgttagcattatcttGctctgatacttacttaccag	5	11	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56128288	T	T	56128288	3	4	88	1	0	0	0	0	1	0	0	0	11335	1319	46	3	568	3	OR8J1	11	56128288	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	223650	56128288	78878228	215	90880											
CCDC88B	283234	broad.mit.edu	37	chr11	64109381	64109381	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccaagaccccagaccacAaccccatgtctggtgttgtg	10	15	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64109381	C	C	64109381	1	2	88	0	1	0	0	0	0	0	0	0	2892	145	5	5		5	CCDC88B	11	64109381	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	7981093	64109381	70897135	216	90881											
SYTL2	54843	broad.mit.edu	37	chr11	85459189	85459189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaatttaaactagagggCcacacattatgaaaagtgta	10	5	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85459189	A	A	85459189	1	1	88	0	1	0	0	0	0	0	0	0	15602	754	26	3		3	SYTL2	11	85459189	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	21349808	85459189	49547327	217	90882											
TMEM135	65084	broad.mit.edu	37	chr11	87024405	87024405	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattcattatagttgtttttGttttatgcttttatttctag	5	3	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87024405	C	C	87024405	1	2	88	0	1	0	0	0	0	0	0	0	16174	1392	48	4		4	TMEM135	11	87024405	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1565216	87024405	47982111	218	90883											
MTNR1B	4544	broad.mit.edu	37	chr11	92714460	92714460	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcatatagctagtgagtgGcagaaatgcaatctgagtct	11	6	3	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92714460	A	A	92714460	1	1	88	0	1	0	0	0	0	0	0	0	10046	1218	42	4		4	MTNR1B	11	92714460	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	5690055	92714460	42292056	219	90884											
TTC12	54970	broad.mit.edu	37	chr11	113196393	113196393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcagggatgtatccatGgggctttctcagggaatagt	15	6	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113196393	T	T	113196393	1	4	88	0	1	0	0	0	0	0	0	0	16805	1363	47	2		2	TTC12	11	113196393	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	20481933	113196393	21810123	220	90885											
ACRV1	56	broad.mit.edu	37	chr11	125547931	125547931	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctacagtatgctcacctTcagcatgttcagtcgcagcg	8	14	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125547931	A	A	125547931	3	1	88	1	0	0	0	0	1	0	0	0	172	1783	62	5	495	5	ACRV1	11	125547931	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	12351538	125547931	9458585	221	90886											
CACNA1C	775	broad.mit.edu	37	chr12	2602364	2602364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccatttgagatgttccaGcagaagatgacccttcccct	9	12	0	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2602364	T	T	2602364	3	4	88	1	0	0	0	0	1	0	0	0	2566	985	34	3	951	3	CACNA1C	12	2602364	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08		2602364	131249531	222	90887											
CD27	939	broad.mit.edu	37	chr12	6560159	6560159	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccggggccctgttcctccatCaacgaaggaaatatagatca	9	12	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6560159	T	T	6560159	4	4	88	1	0	0	0	0	0	1	0	0	3020	827	29	4	655	4	CD27	12	6560159	Nonsense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3957795	6560159	127291736	223	90888											
SLCO1C1	53919	broad.mit.edu	37	chr12	20886046	20886046	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctcctaccaagggtatgttCcctcattaaatagtttgagg	8	9	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20886046	T	T	20886046	1	4	88	0	1	0	0	0	0	0	0	0	14839	870	30	4		4	SLCO1C1	12	20886046	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	14325887	20886046	112965849	224	90889											
SLCO1B3	28234	broad.mit.edu	37	chr12	21036564	21036564	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatcctgtaaaacattgtcAtgtatattagactaaaacac	5	7	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21036564	T	T	21036564	1	4	88	0	1	0	0	0	0	0	0	0	14838	232	8	5		5	SLCO1B3	12	21036564	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	150518	21036564	112815331	225	90890											
TMTC1	83857	broad.mit.edu	37	chr12	29669419	29669419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacggccaaaacctgagCctacaaaaccacatggacct	6	15	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29669419	A	A	29669419	3	1	88	1	0	0	0	0	1	0	0	0	16383	753	26	3	494	3	TMTC1	12	29669419	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	8632855	29669419	104182476	226	90891											
C12orf35	55196	broad.mit.edu	37	chr12	32134983	32134983	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatggtgttcagactcttgCtcaaactaatgaagagaaaa	10	6	3	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32134983	T	T	32134983	3	4	88	1	0	0	0	0	1	0	0	0	1695	797	28	4	1096	4	C12orf35	12	32134983	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2465564	32134983	101716912	227	90892											
ADAMTS20	80070	broad.mit.edu	37	chr12	43769840	43769840	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accatgaaaatgctcagataGaccaaaacacatctcgtacc	5	12	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43769840	T	T	43769840	1	4	88	0	1	0	0	0	0	0	0	0	266	957	33	3		3	ADAMTS20	12	43769840	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	11634857	43769840	90082055	228	90893											
WNT10B	7480	broad.mit.edu	37	chr12	49359953	49359953	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaccagtggaagcggcaAtggcagcgctcaactcgtgt	13	12	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49359953	G	G	49359953	2	3	88	1	0	0	0	0	0	0	0	1	17510	98	4	5		5	WNT10B	12	49359953	Silent	SNP	A	TCGA-17-Z059-01A-01W-0747-08	5590113	49359953	84491942	229	90894											
ACVRL1	94	broad.mit.edu	37	chr12	52314647	52314647	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactacaaaaaattagcaaCagtccagagaagcctaaagt	6	9	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52314647	T	T	52314647	2	4	88	1	0	0	0	0	0	0	0	1	225	477	17	4		4	ACVRL1	12	52314647	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2954694	52314647	81537248	230	90895											
ATP5B	506	broad.mit.edu	37	chr12	57039070	57039070	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaccactgcgccaatgacCgccacgatgcgcccggtggc	11	18	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57039070	A	A	57039070	2	1	88	1	0	0	0	0	0	0	0	1	1152	639	23	1		1	ATP5B	12	57039070	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	4724423	57039070	76812825	231	90896											
PPM1H	57460	broad.mit.edu	37	chr12	63042242	63042242	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcccagctttcttcccctCtgtcctcccaatcccctggg	5	20	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63042242	A	A	63042242	1	1	88	0	1	0	0	0	0	0	0	0	12442	928	32	3		3	PPM1H	12	63042242	3'UTR	SNP	C	TCGA-17-Z059-01A-01W-0747-08	6003172	63042242	70809653	232	90897											
PPM1H	57460	broad.mit.edu	37	chr12	63042444	63042444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaccaggaacgagacaGtcagtagagcatcagacaga	13	8	2	5			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63042444	A	A	63042444	1	1	88	0	1	0	0	0	0	0	0	0	12442	1044	36	4		4	PPM1H	12	63042444	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	202	63042444	70809451	233	90898											
SRGAP1	57522	broad.mit.edu	37	chr12	64484969	64484969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaacccaagattcccGtgttttgtaatattgatgtg	11	6	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64484969	T	T	64484969	1	4	88	0	1	0	0	0	0	0	0	0	15263	1160	40	3		3	SRGAP1	12	64484969	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1442525	64484969	69366926	234	90899											
C12orf26	84190	broad.mit.edu	37	chr12	82796795	82796795	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggtctccacacttgtggtGatctggctccaaatactttg	10	10	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82796795	C	C	82796795	3	2	88	1	0	0	0	0	1	0	0	0	1692	1290	45	4	1183	4	C12orf26	12	82796795	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	18311826	82796795	51055100	235	90900											
TMTC3	160418	broad.mit.edu	37	chr12	88588809	88588809	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgctttgtttaatctggctCtcctgtattcccagactgca	8	11	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88588809	T	T	88588809	3	4	88	1	0	0	0	0	1	0	0	0	16385	913	32	4	2178	4	TMTC3	12	88588809	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5792014	88588809	45263086	236	90901											
NR2C1	7181	broad.mit.edu	37	chr12	95443148	95443148	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagtgatatgcccgcctcAgccttccaaagtgctgggat	10	12	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95443148	G	G	95443148	1	3	88	0	1	0	0	0	0	0	0	0	10717	203	7	5		5	NR2C1	12	95443148	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	6854339	95443148	38408747	237	90902											
TBX5	6910	broad.mit.edu	37	chr12	114793304	114793304	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctctctctctctctttctCtaggaaatgtctgttgtgaa	6	11	5	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114793304	G	G	114793304	1	3	88	0	1	0	0	0	0	0	0	0	15783	928	32	4		4	TBX5	12	114793304	3'UTR	SNP	C	TCGA-17-Z059-01A-01W-0747-08	19350156	114793304	19058591	238	90903											
TCTN2	79867	broad.mit.edu	37	chr12	124192179	124192179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctcagtgtgttgctaaGggcttactgttgctgttgtt	11	7	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124192179	T	T	124192179	3	4	88	1	0	0	0	0	1	0	0	0	15845	991	35	2	2083	2	TCTN2	12	124192179	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	9398875	124192179	9659716	239	90904											
RNF17	56163	broad.mit.edu	37	chr13	25338423	25338423	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtcagccctggggtgccGctgaaatccagtgcaccagg	14	12	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25338423	A	A	25338423	3	1	88	1	0	0	0	0	1	0	0	0	13572	1087	38	4	84	4	RNF17	13	25338423	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08		25338423	89831455	240	90905											
RNF17	56163	broad.mit.edu	37	chr13	25416152	25416152	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attttgtgacatatttctttCcccaaactttcttaatggtt	4	8	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25416152	T	T	25416152	1	4	88	0	1	0	0	0	0	0	0	0	13572	870	30	4		4	RNF17	13	25416152	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	77729	25416152	89753726	241	90906											
FLT1	2321	broad.mit.edu	37	chr13	28877390	28877390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctttccagctcagcgtGgtcgtaggtgaacctgcgct	11	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28877390	T	T	28877390	3	4	88	1	0	0	0	0	1	0	0	0	5999	1348	47	2	89	2	FLT1	13	28877390	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3461238	28877390	86292488	242	90907											
KIAA1704	55425	broad.mit.edu	37	chr13	45578634	45578634	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctagtataagttggctggAacagatagctagtaagggga	14	4	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45578634	T	T	45578634	1	4	88	0	1	0	0	0	0	0	0	0	8322	261	9	5		5	KIAA1704	13	45578634	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	16701244	45578634	69591244	243	90908											
RB1	5925	broad.mit.edu	37	chr13	48947674	48947674	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgtaatatcttggcaaagAaacttgaaattaaaagttaa	6	3	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48947674	T	T	48947674	1	4	88	0	1	0	0	0	0	0	0	0	13206	261	9	5		5	RB1	13	48947674	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	3369040	48947674	66222204	244	90909											
PCDH17	27253	broad.mit.edu	37	chr13	58208640	58208640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgctgcaccctttctgggagGacgtgacgcccgtggtggag	16	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58208640	T	T	58208640	3	4	88	1	0	0	0	0	1	0	0	0	11606	1174	41	3	1962	3	PCDH17	13	58208640	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	9260966	58208640	56961238	245	90910											
KLHL1	57626	broad.mit.edu	37	chr13	70535514	70535514	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgatctcctcttgcttgGcttcacaaacatcacttgta	5	11	4	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70535514	C	C	70535514	3	2	88	1	0	0	0	0	1	0	0	0	8436	1203	42	4	1539	4	KLHL1	13	70535514	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	12326874	70535514	44634364	246	90911											
OR10G2	26534	broad.mit.edu	37	chr14	22102088	22102088	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacctgctgttatcctcttcAgggcagacttcacttcctgg	8	13	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22102088	T	T	22102088	3	4	88	1	0	0	0	0	1	0	0	0	10993	188	7	5	24	5	OR10G2	14	22102088	Missense_Mutation	SNP	A	TCGA-17-Z059-01A-01W-0747-08		22102088	85247452	247	90912											
CDH24	64403	broad.mit.edu	37	chr14	23522740	23522740	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtccaggtcagccgcGgagatctggcctaccagggt	17	11	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23522740	C	C	23522740	2	2	88	1	0	0	0	0	0	0	0	1	3139	1103	39	4		4	CDH24	14	23522740	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1420652	23522740	83826800	248	90913											
MYH6	4624	broad.mit.edu	37	chr14	23863422	23863422	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggccatctccttctccGtctctgcgctcttcagcagc	9	16	5	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23863422	A	A	23863422	3	1	88	1	0	0	0	0	1	0	0	0	10132	1145	40	4	3355	4	MYH6	14	23863422	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	340682	23863422	83486118	249	90914											
SCFD1	23256	broad.mit.edu	37	chr14	31169605	31169605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagaaaaatggccaggcGtggtgactcacacctgtaat	10	8	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31169605	T	T	31169605	1	4	88	0	1	0	0	0	0	0	0	0	14001	1160	40	3		3	SCFD1	14	31169605	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7306183	31169605	76179935	250	90915											
PRPF39	55015	broad.mit.edu	37	chr14	45583890	45583890	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatagtttctttttttttAaaaaaagtttttgttccaat	5	3	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45583890	T	T	45583890	1	4	88	0	1	0	0	0	0	0	0	0	12675	377	13	5		5	PRPF39	14	45583890	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	14414285	45583890	61765650	251	90916											
MDGA2	161357	broad.mit.edu	37	chr14	47389255	47389255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaacaatccgatccactGcatcaggattcatctgtgtc	7	12	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47389255	T	T	47389255	3	4	88	1	0	0	0	0	1	0	0	0	9500	1319	46	3	911	3	MDGA2	14	47389255	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1805365	47389255	59960285	252	90917											
SAMD4A	23034	broad.mit.edu	37	chr14	55203701	55203702	+	Intron	INS	-	G	G													cttcggtgtcccaggataaaINSggggggggaataacctattt							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55203702	G	G	55203701	6	5	88	0	1	1	1	0	0	0	0	0	13932	87	3	0		0	SAMD4A	14	55203701	Intron	INS	-	TCGA-17-Z059-01A-01W-0747-08	7814446	55203701	52145839	253	90918											
TBPL2	387332	broad.mit.edu	37	chr14	55900394	55900394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagagctaaatataagggCtgttgtcctgggctctcgga	12	10	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55900394	T	T	55900394	3	4	88	1	0	0	0	0	1	0	0	0	15768	797	28	4	401	4	TBPL2	14	55900394	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	696693	55900394	51449146	254	90919											
KTN1	3895	broad.mit.edu	37	chr14	56101267	56101267	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcagaactaaataaacTacgccaggattatgctaggt	9	8	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56101267	A	A	56101267	3	1	88	1	0	0	0	0	1	0	0	0	8657	1522	53	5	1382	5	KTN1	14	56101267	Missense_Mutation	SNP	T	TCGA-17-Z059-01A-01W-0747-08	200873	56101267	51248273	255	90920											
SIPA1L1	26037	broad.mit.edu	37	chr14	72055393	72055393	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagacgggcctatctcacaGagagagaacctcaggctttt	10	10	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72055393	A	A	72055393	2	1	88	1	0	0	0	0	0	0	0	1	14442	933	33	4		4	SIPA1L1	14	72055393	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	15954126	72055393	35294147	256	90921											
KIAA0317	9870	broad.mit.edu	37	chr14	75137385	75137385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggttgtcaggttcccagatCagtttcataattttgaatcc	8	8	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75137385	A	A	75137385	1	1	88	0	1	0	0	0	0	0	0	0	8237	841	29	3		3	KIAA0317	14	75137385	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3081992	75137385	32212155	257	90922											
NRXN3	9369	broad.mit.edu	37	chr14	79454268	79454268	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcaaatgtttgggggcatGagaatggtaaattcaggtga	13	4	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79454268	A	A	79454268	1	1	88	0	1	0	0	0	0	0	0	0	10762	1305	45	4		4	NRXN3	14	79454268	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	4316883	79454268	27895272	258	90923											
MARK3	4140	broad.mit.edu	37	chr14	103941476	103941476	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaattgctccagccagtcccAtgcttgggaatgcaagtaat	10	10	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103941476	T	T	103941476	3	4	88	1	0	0	0	0	1	0	0	0	9406	217	8	5	1461	5	MARK3	14	103941476	Missense_Mutation	SNP	A	TCGA-17-Z059-01A-01W-0747-08	24487208	103941476	3408064	259	90924											
OR4N4	283694	broad.mit.edu	37	chr15	22333203	22333203	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatttgaggcctttctgcaGcttctctgtggataagatat	9	8	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22333203	A	A	22333203	1	1	88	0	1	0	0	0	0	0	0	0	11172	986	34	4		4	OR4N4	15	22333203	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		22333203	80198189	260	90925											
C15orf2	23742	broad.mit.edu	37	chr15	24922899	24922899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacttccatttatattcCacaataccaccccaagtttt	1	16	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922899	A	A	24922899	3	1	88	1	0	0	0	0	1	0	0	0	1797	594	21	2	1887	2	C15orf2	15	24922899	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2589696	24922899	77608493	261	90926											
C15orf55	256646	broad.mit.edu	37	chr15	34638338	34638338	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgaggtgctacaccccgtCaaaggtatcacacttgggga	12	10	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34638338	A	A	34638338	1	1	88	0	1	0	0	0	0	0	0	0	1816	841	29	3		3	C15orf55	15	34638338	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	9715439	34638338	67893054	262	90927											
C15orf41	84529	broad.mit.edu	37	chr15	37100680	37100680	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcctggaagagaagctGggaggaaaaggtgaatccgg	16	5	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37100680	T	T	37100680	1	4	88	0	1	0	0	0	0	0	0	0	1808	1363	47	2		2	C15orf41	15	37100680	3'UTR	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2462342	37100680	65430712	263	90928											
SQRDL	58472	broad.mit.edu	37	chr15	45965940	45965940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccttcccaaatactccaGtgaagtgtgctggagcccct	8	14	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45965940	T	T	45965940	3	4	88	1	0	0	0	0	1	0	0	0	15247	1029	36	3	609	3	SQRDL	15	45965940	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	8865260	45965940	56565452	264	90929											
SLC12A1	6557	broad.mit.edu	37	chr15	48521502	48521502	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtatgtggtgggatttgctGagactgtagtagatcttctt	13	4	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48521502	A	A	48521502	3	1	88	1	0	0	0	0	1	0	0	0	14495	1291	45	4	959	4	SLC12A1	15	48521502	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2555562	48521502	54009890	265	90930											
MYO5C	55930	broad.mit.edu	37	chr15	52488747	52488747	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagatactcctgtgtgtcccGagagggtaccagagttcgct	12	11	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52488747	A	A	52488747	1	1	88	0	1	0	0	0	0	0	0	0	10174	1073	37	4		4	MYO5C	15	52488747	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3967245	52488747	50042645	266	90931											
UNC13C	440279	broad.mit.edu	37	chr15	54557651	54557651	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaagaagaacaaaaaccAtttttggaaatttgaatcca	5	6	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54557651	G	G	54557651	3	3	88	1	0	0	0	0	1	0	0	0	17112	217	8	5	3805	5	UNC13C	15	54557651	Missense_Mutation	SNP	A	TCGA-17-Z059-01A-01W-0747-08	2068904	54557651	47973741	267	90932											
VPS13C	54832	broad.mit.edu	37	chr15	62273444	62273444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaataagtctacatttaGtttagtgaactctgaagaaa	6	4	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62273444	A	A	62273444	1	1	88	0	1	0	0	0	0	0	0	0	17318	1044	36	4		4	VPS13C	15	62273444	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7715793	62273444	40257948	268	90933											
HEXA	3073	broad.mit.edu	37	chr15	72647993	72647993	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagaaatgaactcatttaGttggttaaggttttctattc	8	5	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72647993	A	A	72647993	1	1	88	0	1	0	0	0	0	0	0	0	7140	1044	36	4		4	HEXA	15	72647993	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	10374549	72647993	29883399	269	90934											
EFTUD1	79631	broad.mit.edu	37	chr15	82512234	82512234	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtctgaaatatagaaggagGagtgaatatgatatctttcg	11	3	2	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82512234	A	A	82512234	1	1	88	0	1	0	0	0	0	0	0	0	5000	1189	41	4		4	EFTUD1	15	82512234	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	9864241	82512234	20019158	270	90935											
POLG	5428	broad.mit.edu	37	chr15	89862022	89862023	+	Intron	INS	-	A	A													ggtgaaaggggctatgctacINSataccaattaactccagggt							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89862023	A	A	89862022	6	5	88	0	1	1	1	0	0	0	0	0	12295	493	17	0		0	POLG	15	89862022	Intron	INS	-	TCGA-17-Z059-01A-01W-0747-08	7349788	89862022	12669370	271	90936											
SPATA8	145946	broad.mit.edu	37	chr15	97327494	97327494	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgcaaaggaaggtaaGtaggtggcagggctgagtct	17	6	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97327494	A	A	97327494	1	1	88	0	1	0	0	0	0	0	0	0	15131	1044	36	4		4	SPATA8	15	97327494	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7465472	97327494	5203898	272	90937											
ASB7	140460	broad.mit.edu	37	chr15	101185954	101185954	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttccagatgctaaacatTtacaaagtggagaataggaa	9	6	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101185954	C	C	101185954	1	2	88	0	1	0	0	0	0	0	0	0	1032	1856	64	5		5	ASB7	15	101185954	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	3858460	101185954	1345438	273	90938											
ALDH1A3	220	broad.mit.edu	37	chr15	101434170	101434170	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgcagtggaacttcccCctgctgatgctggtgtggaa	13	11	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101434170	A	A	101434170	2	1	88	1	0	0	0	0	0	0	0	1	492	610	22	2		2	ALDH1A3	15	101434170	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	248216	101434170	1097222	274	90939											
WDR90	197335	broad.mit.edu	37	chr16	711858	711858	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgggccccgggacacTgctgacccatggccactctc	11	18	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	711858	C	C	711858	1	2	88	0	1	0	0	0	0	0	0	0	17464	1595	55	5		5	WDR90	16	711858	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08		711858	89642895	275	90940											
HS3ST6	64711	broad.mit.edu	37	chr16	1961899	1961899	+	Frame_Shift_Del	DEL	G	-	-													gacgaacaggaagtgggacaGggggaagtagcgcagccagt							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1961899	-	-	1961899	7	5	88	1	0	1	0	1	0	0	0	0	7436	991	35	0	311	0	HS3ST6	16	1961899	Frame_Shift_Del	DEL	G	TCGA-17-Z059-01A-01W-0747-08	1250041	1961899	88392854	276	90941											
AMDHD2	51005	broad.mit.edu	37	chr16	2578770	2578770	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtctgtgagtggtgggtcCccaaggggctggaccgggtg	20	8	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2578770	G	G	2578770	1	3	88	0	1	0	0	0	0	0	0	0	568	638	22	4		4	AMDHD2	16	2578770	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	616871	2578770	87775983	277	90942											
CREBBP	1387	broad.mit.edu	37	chr16	3778569	3778569	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggttcaggcctcccatcGcctgctgctgtggaggcaca	15	13	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3778569	A	A	3778569	3	1	88	1	0	0	0	0	1	0	0	0	3893	1087	38	4	853	4	CREBBP	16	3778569	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1199799	3778569	86576184	278	90943											
ACSM2B	348158	broad.mit.edu	37	chr16	20557639	20557639	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctattatttttgactcaAtaaacaatggaaaacataaa	3	5	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20557639	C	C	20557639	1	2	88	0	1	0	0	0	0	0	0	0	184	116	4	5		5	ACSM2B	16	20557639	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	16779070	20557639	69797114	279	90944											
CRYM	1428	broad.mit.edu	37	chr16	21272512	21272512	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgactcattgctctttccAccaatgggtgaacctgcctt	9	12	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21272512	G	G	21272512	1	3	88	0	1	0	0	0	0	0	0	0	3953	174	6	5		5	CRYM	16	21272512	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	714873	21272512	69082241	280	90945											
ARMC5	79798	broad.mit.edu	37	chr16	31473869	31473869	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagatgagctccggcagcGccgggatcctaatggagcta	15	10	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31473869	A	A	31473869	3	1	88	1	0	0	0	0	1	0	0	0	958	1087	38	4	1011	4	ARMC5	16	31473869	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	10201357	31473869	58880884	281	90946											
SHCBP1	79801	broad.mit.edu	37	chr16	46629573	46629573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccagcgtagtcttaccaCggtgaacaactgggatgaaa	10	9	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46629573	A	A	46629573	3	1	88	1	0	0	0	0	1	0	0	0	14387	536	19	3	679	3	SHCBP1	16	46629573	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	15155704	46629573	43725180	282	90947											
C16orf48	84080	broad.mit.edu	37	chr16	67699940	67699940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctttccaccccgcactgCctctctgtcccttcttccat	3	20	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67699940	A	A	67699940	1	1	88	0	1	0	0	0	0	0	0	0	1830	754	26	3		3	C16orf48	16	67699940	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	21070367	67699940	22654813	283	90948											
CALB2	794	broad.mit.edu	37	chr16	71408698	71408698	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaaggagttcatgcagaaGtatgataaaaactcagatgg	11	4	2	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71408698	C	C	71408698	3	2	88	1	0	0	0	0	1	0	0	0	2600	1020	36	4	232	4	CALB2	16	71408698	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3708758	71408698	18946055	284	90949											
PLCG2	5336	broad.mit.edu	37	chr16	81944444	81944444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccctctccccagcccaCcggcatctcaaaattgccga	6	19	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81944444	A	A	81944444	1	1	88	0	1	0	0	0	0	0	0	0	12131	522	18	3		3	PLCG2	16	81944444	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	10535746	81944444	8410309	285	90950											
CAMKK1	84254	broad.mit.edu	37	chr17	3776834	3776834	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctccagcgggctgcaggaGaggcctgcagggaacctctt	15	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3776834	C	C	3776834	1	2	88	0	1	0	0	0	0	0	0	0	2632	957	33	4		4	CAMKK1	17	3776834	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		3776834	77418376	286	90951											
DNAH2	146754	broad.mit.edu	37	chr17	7735979	7735979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgagctgtgggccagccGggcccggcctcctgtgatct	15	13	1	2	rs138065395	by1000genomes	TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7735979	T	T	7735979	3	4	88	1	0	0	0	0	1	0	0	0	4642	1116	39	1	13135	1	DNAH2	17	7735979	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	3959145	7735979	73459231	287	90952											
CDRT15	146822	broad.mit.edu	37	chr17	14139347	14139347	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcacacagataaaccaGgatcaggagaataaacggac	9	10	1	2	rs150825694	by1000genomes	TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14139347	A	A	14139347	1	1	88	0	1	0	0	0	0	0	0	0	3205	1015	35	4		4	CDRT15	17	14139347	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	6403368	14139347	67055863	288	90953											
ALDH3A2	224	broad.mit.edu	37	chr17	19555060	19555060	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattaccccttcgttctcacCattcagccactgataggagc	6	14	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19555060	T	T	19555060	2	4	88	1	0	0	0	0	0	0	0	1	498	581	21	4		4	ALDH3A2	17	19555060	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5415713	19555060	61640150	289	90954											
CCT6B	10693	broad.mit.edu	37	chr17	33267604	33267604	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgaagagctactattccatGttttgcaagagaatctaagg	10	7	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33267604	C	C	33267604	3	2	88	1	0	0	0	0	1	0	0	0	2988	1377	48	4	698	4	CCT6B	17	33267604	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	13712544	33267604	47927606	290	90955											
ACACA	31	broad.mit.edu	37	chr17	35545496	35545496	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcaggtctgctcatatttGagaaagaaggggtaaaaaaa	10	4	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35545496	C	C	35545496	1	2	88	0	1	0	0	0	0	0	0	0	106	1305	45	4		4	ACACA	17	35545496	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2277892	35545496	45649714	291	90956											
GSDMA	284110	broad.mit.edu	37	chr17	38127821	38127821	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaaccatccccaagggctgCgtcctggcctttcgagtgag	12	13	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38127821	G	G	38127821	3	3	88	1	0	0	0	0	1	0	0	0	6882	776	27	4	617	4	GSDMA	17	38127821	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2582325	38127821	43067389	292	90957											
KRT14	3861	broad.mit.edu	37	chr17	39739372	39739372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggatgactgcgatccagagGagaactgggaggaggagagg	19	5	0	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39739372	A	A	39739372	3	1	88	1	0	0	0	0	1	0	0	0	8522	1174	41	4	131	4	KRT14	17	39739372	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1611551	39739372	41455838	293	90958											
KAT2A	2648	broad.mit.edu	37	chr17	40271354	40271354	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagctgccggcgggtaaCggtgaaaatggaccggagaa	16	9	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40271354	T	T	40271354	3	4	88	1	0	0	0	0	1	0	0	0	8051	536	19	4	1583	4	KAT2A	17	40271354	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	531982	40271354	40923856	294	90959											
GHDC	84514	broad.mit.edu	37	chr17	40344811	40344812	+	Intron	INS	-	C	C													tgtcagagccagacccagagINScccccatttgggggttcttt							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40344812	C	C	40344811	6	5	88	0	1	1	1	0	0	0	0	0	6433	986	34	0		0	GHDC	17	40344811	Intron	INS	-	TCGA-17-Z059-01A-01W-0747-08	73457	40344811	40850399	295	90960											
STAT3	6774	broad.mit.edu	37	chr17	40476748	40476748	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaagagtttctctgccagTgtagtcagctgctcgatgct	10	12	2	1	rs1141123		TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40476748	A	A	40476748	2	1	88	1	0	0	0	0	0	0	0	1	15384	1683	59	5		5	STAT3	17	40476748	Silent	SNP	T	TCGA-17-Z059-01A-01W-0747-08	131937	40476748	40718462	296	90961											
SLC4A1	6521	broad.mit.edu	37	chr17	42335048	42335048	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaagaaggcttcctcaaaCaccagcaggggtcctgagaa	12	10	1	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42335048	T	T	42335048	2	4	88	1	0	0	0	0	0	0	0	1	14764	465	17	4		4	SLC4A1	17	42335048	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1858300	42335048	38860162	297	90962											
KIAA1267	284058	broad.mit.edu	37	chr17	44116300	44116300	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcctagaaagtgaaggaCaaagctgggggtaattaaga	12	5	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44116300	T	T	44116300	1	4	88	0	1	0	0	0	0	0	0	0	8289	493	17	4		4	KIAA1267	17	44116300	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1781252	44116300	37078910	298	90963											
OSBPL7	114881	broad.mit.edu	37	chr17	45892693	45892693	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagctggggggtgagctcgCgccccttcatgtacagagct	14	11	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45892693	G	G	45892693	3	3	88	1	0	0	0	0	1	0	0	0	11376	768	27	4	1427	4	OSBPL7	17	45892693	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1776393	45892693	35302517	299	90964											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46052470	46052470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtgtgtgcatcctgggGcatgcctgcctcatgtgggg	17	9	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46052470	T	T	46052470	1	4	88	0	1	0	0	0	0	0	0	0	3177	1218	42	3		3	CDK5RAP3	17	46052470	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	159777	46052470	35142740	300	90965											
KIF2B	84643	broad.mit.edu	37	chr17	51902076	51902076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatccgattggacatgaggCaccaaggatgttaaaaagtc	10	8	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51902076	A	A	51902076	3	1	88	1	0	0	0	0	1	0	0	0	8368	710	25	3	1684	3	KIF2B	17	51902076	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5849606	51902076	29293134	301	90966											
CD300C	10871	broad.mit.edu	37	chr17	72537633	72537633	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaaggattccaggagatGtggagagagcagcccgggag	16	8	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72537633	T	T	72537633	1	4	88	0	1	0	0	0	0	0	0	0	3027	1392	48	3		3	CD300C	17	72537633	3'UTR	SNP	G	TCGA-17-Z059-01A-01W-0747-08	20635557	72537633	8657577	302	90967											
COLEC12	81035	broad.mit.edu	37	chr18	334871	334871	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcaagcctggcagtcCccgaggtccaggcaccccag	12	18	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	334871	A	A	334871	4	1	88	1	0	0	0	0	0	1	0	0	3744	632	22	2	561	2	COLEC12	18	334871	Nonsense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08		334871	77742377	303	90968											
DSC2	1824	broad.mit.edu	37	chr18	28672144	28672145	+	Missense_Mutation	DNP	TC	CA	CA													aagtaatatggtaaaacttcTcttctccgaggacaatagaa							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	28672145	CA	CA	28672144	3	2	88	1	0	0	0	0	1	0	0	0	4806	1559	54	5	2527	5	DSC2	18	28672144	Missense_Mutation	DNP	TC	TCGA-17-Z059-01A-01W-0747-08	28337273	28672144	49405104	304	90969											
ASXL3	80816	broad.mit.edu	37	chr18	31324855	31324856	+	Missense_Mutation	DNP	GG	TT	TT													gcagacaagggctttagaatGgacactgaagacttccctgg							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31324856	TT	TT	31324855	3	4	88	1	0	0	0	0	1	0	0	0	1072	1348	47	2	5089	2	ASXL3	18	31324855	Missense_Mutation	DNP	GG	TCGA-17-Z059-01A-01W-0747-08	2652711	31324855	46752393	305	90970											
INO80C	125476	broad.mit.edu	37	chr18	33077669	33077669	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcacgcgcagcctgggaGcgcgactgcgtacctgcgca	15	16	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33077669	A	A	33077669	1	1	88	0	1	0	0	0	0	0	0	0	7818	986	34	4		4	INO80C	18	33077669	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1752814	33077669	44999579	306	90971											
CXXC1	30827	broad.mit.edu	37	chr18	47811073	47811073	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaccccaccctctgcctTtccacatccactttaccctc	1	22	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47811073	A	A	47811073	1	1	88	0	1	0	0	0	0	0	0	0	4130	1856	64	5		5	CXXC1	18	47811073	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	14733404	47811073	30266175	307	90972											
DCC	1630	broad.mit.edu	37	chr18	50705456	50705456	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggggaccgggagagagttctCaacccatcaaggtggccaca	14	11	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50705456	G	G	50705456	3	3	88	1	0	0	0	0	1	0	0	0	4315	827	29	4	1577	4	DCC	18	50705456	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2894383	50705456	27371792	308	90973											
ZNRF4	148066	broad.mit.edu	37	chr19	5455509	5455509	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagacacgacgcatgccgCtctgccgtccggagcactta	10	15	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5455509	T	T	5455509	3	4	88	1	0	0	0	0	1	0	0	0	18343	797	28	4	9	4	ZNRF4	19	5455509	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08		5455509	53673474	309	90974											
PNPLA6	10908	broad.mit.edu	37	chr19	7619692	7619692	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccaggccacgtgcaccCtcgccatgggggtaggcgat	14	14	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7619692	G	G	7619692	1	3	88	0	1	0	0	0	0	0	0	0	12264	696	24	4		4	PNPLA6	19	7619692	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2164183	7619692	51509291	310	90975											
CLEC4M	10332	broad.mit.edu	37	chr19	7832417	7832417	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagaacttcctacagctgCagacttccaggagtaaccgc	8	14	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7832417	T	T	7832417	4	4	88	1	0	0	0	0	0	1	0	0	3550	711	25	4	995	4	CLEC4M	19	7832417	Nonsense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	212725	7832417	51296566	311	90976											
ADAMTS10	81794	broad.mit.edu	37	chr19	8666020	8666020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatggccgccctttccacGgtttctcatctggggaaccc	9	16	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8666020	T	T	8666020	3	4	88	1	0	0	0	0	1	0	0	0	256	1116	39	1	2793	1	ADAMTS10	19	8666020	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	833603	8666020	50462963	312	90977											
MUC16	94025	broad.mit.edu	37	chr19	9026420	9026420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacataataaatattttcCacgcctttcttatctatgat	4	8	2	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9026420	A	A	9026420	1	1	88	0	1	0	0	0	0	0	0	0	10067	609	21	2		2	MUC16	19	9026420	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	360400	9026420	50102563	313	90978											
OR7E24	26648	broad.mit.edu	37	chr19	9361855	9361855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaactgcagccggtcctcGctgggctgttcctgtccatg	12	14	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9361855	T	T	9361855	3	4	88	1	0	0	0	0	1	0	0	0	11315	1087	38	3	138	3	OR7E24	19	9361855	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	335435	9361855	49767128	314	90979											
CPAMD8	27151	broad.mit.edu	37	chr19	17039000	17039000	+	Frame_Shift_Del	DEL	G	-	-													ggtggcctcgggagggtccaGgccacaatgacagactcatt							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17039000	-	-	17039000	7	5	88	1	0	1	0	1	0	0	0	0	3827	987	35	0	2540	0	CPAMD8	19	17039000	Frame_Shift_Del	DEL	G	TCGA-17-Z059-01A-01W-0747-08	7677145	17039000	42089983	315	90980											
UNC13A	23025	broad.mit.edu	37	chr19	17743841	17743841	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagggtattatagggtgctCacagccttggaggggacaca	15	7	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17743841	T	T	17743841	1	4	88	0	1	0	0	0	0	0	0	0	17110	841	29	4		4	UNC13A	19	17743841	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	704841	17743841	41385142	316	90981											
JAK3	3718	broad.mit.edu	37	chr19	17954675	17954675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggacaggtcctccgtggcCagagcaaagagggagtggta	16	9	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17954675	A	A	17954675	2	1	88	1	0	0	0	0	0	0	0	1	8009	581	21	2		2	JAK3	19	17954675	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	210834	17954675	41174308	317	90982											
PBX4	80714	broad.mit.edu	37	chr19	19710229	19710229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatagtcatcatcttgtcCccaagagtaaagatcttcca	6	10	4	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19710229	A	A	19710229	1	1	88	0	1	0	0	0	0	0	0	0	11589	638	22	2		2	PBX4	19	19710229	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	1755554	19710229	39418754	318	90983											
ZNF676	163223	broad.mit.edu	37	chr19	22363074	22363074	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtactaaagcctttgccaCattcttcacatttgtaaggt	6	10	2	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22363074	T	T	22363074	3	4	88	1	0	0	0	0	1	0	0	0	18210	478	17	4	325	4	ZNF676	19	22363074	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2652845	22363074	36765909	319	90984											
ATP4A	495	broad.mit.edu	37	chr19	36050730	36050730	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacagtggccagcagcccctCaggcacataggccaccacga	11	16	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36050730	G	G	36050730	3	3	88	1	0	0	0	0	1	0	0	0	1149	835	29	4	2138	4	ATP4A	19	36050730	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	13687656	36050730	23078253	320	90985											
PSG8	440533	broad.mit.edu	37	chr19	43269801	43269801	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagcttcctgagcacaGctctcagcagtgctgtcctg	10	14	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43269801	T	T	43269801	1	4	88	1	0	0	0	0	0	0	0	0	12767	986	34	3		3	PSG8	19	43269801	Translation_Start_Site	SNP	G	TCGA-17-Z059-01A-01W-0747-08	7219071	43269801	15859182	321	90986											
PSG9	5678	broad.mit.edu	37	chr19	43765837	43765837	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagcctcttttctcccatTgttgatcaagcctaggccta	7	13	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43765837	A	A	43765837	1	1	88	0	1	0	0	0	0	0	0	0	12768	1827	63	5		5	PSG9	19	43765837	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08	496036	43765837	15363146	322	90987											
RSPH6A	81492	broad.mit.edu	37	chr19	46299233	46299233	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagagcctgctcctcttccActgtggggtcactcatctcc	8	16	5	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46299233	T	T	46299233	3	4	88	1	0	0	0	0	1	0	0	0	13818	159	6	5	109	5	RSPH6A	19	46299233	Missense_Mutation	SNP	A	TCGA-17-Z059-01A-01W-0747-08	2533396	46299233	12829750	323	90988											
LIG1	3978	broad.mit.edu	37	chr19	48654564	48654564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctgtggccacttcagCctctgtgaggctttctttcg	9	13	4	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48654564	A	A	48654564	3	1	88	1	0	0	0	0	1	0	0	0	8853	739	26	3	2348	3	LIG1	19	48654564	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2355331	48654564	10474419	324	90989											
KLK5	25818	broad.mit.edu	37	chr19	51452188	51452188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggacaatgagaggagacGttgatgggtctgacatcttt	15	5	2	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51452188	T	T	51452188	3	4	88	1	0	0	0	0	1	0	0	0	8478	1136	40	3	374	3	KLK5	19	51452188	Missense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	2797624	51452188	7676795	325	90990											
PEG3	5178	broad.mit.edu	37	chr19	57335709	57335709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggcttttttgctcgcacCcaaggcttgagcttttcagg	10	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57335709	A	A	57335709	3	1	88	1	0	0	0	0	1	0	0	0	11814	624	22	2		2	PEG3	19	57335709	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	5883521	57335709	1793274	326	90991											
ZNF256	10172	broad.mit.edu	37	chr19	58452654	58452654	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgtgaactctctggtgttGaaggagcgtagagctatgag	15	5	1	4			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58452654	A	A	58452654	4	1	88	1	0	0	0	0	0	1	0	0	17925	1299	45	4	365	4	ZNF256	19	58452654	Nonsense_Mutation	SNP	G	TCGA-17-Z059-01A-01W-0747-08	1116945	58452654	676329	327	90992											
C20orf194	25943	broad.mit.edu	37	chr20	3278644	3278644	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagggggaaaaaaaagtagTagtagttttgctgaataatg	12	2	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3278644	A	A	3278644	1	1	88	0	1	0	0	0	0	0	0	0	2121	1653	57	5		5	C20orf194	20	3278644	Intron	SNP	T	TCGA-17-Z059-01A-01W-0747-08		3278644	59746876	328	90993											
MYBL2	4605	broad.mit.edu	37	chr20	42343673	42343673	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtatcctctttcaggtctCagcagccaggtggtggtgct	13	10	3	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42343673	T	T	42343673	1	4	88	0	1	0	0	0	0	0	0	0	10104	841	29	4		4	MYBL2	20	42343673	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	39065029	42343673	20681847	329	90994											
JPH2	57158	broad.mit.edu	37	chr20	42788290	42788290	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctcggccttctggcgcgcGatagcagcggcgcgctgggc	16	14	2	0	rs143158930		TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42788290	A	A	42788290	2	1	88	1	0	0	0	0	0	0	0	1	8031	1048	37	4		4	JPH2	20	42788290	Silent	SNP	G	TCGA-17-Z059-01A-01W-0747-08	444617	42788290	20237230	330	90995											
ELMO2	63916	broad.mit.edu	37	chr20	45000483	45000483	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtcatcctgactcatcctCtcagactggcgcagtcgtag	9	13	3	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45000483	A	A	45000483	3	1	88	1	0	0	0	0	1	0	0	0	5108	912	32	3	644	3	ELMO2	20	45000483	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	2212193	45000483	18025037	331	90996											
TPTE	7179	broad.mit.edu	37	chr21	10952818	10952818	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtgatccgcccgcctcGgcctcccagggtgctgggat	13	15	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10952818	T	T	10952818	1	4	88	0	1	0	0	0	0	0	0	0	16554	1131	39	1		1	TPTE	21	10952818	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		10952818	37177077	332	90997											
TOP3B	8940	broad.mit.edu	37	chr22	22313620	22313620	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcctgcgggcaagcagaGtgcaggagtcatctccctcc	12	14	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22313620	A	A	22313620	1	1	88	0	1	0	0	0	0	0	0	0	16492	1044	36	4		4	TOP3B	22	22313620	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08		22313620	28990946	333	90998											
MYO18B	84700	broad.mit.edu	37	chr22	26351362	26351362	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccatcatgggctcttagcGactgagggtttgcaatgtgg	13	10	2	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26351362	A	A	26351362	1	1	88	0	1	0	0	0	0	0	0	0	10160	1073	37	4		4	MYO18B	22	26351362	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	4037742	26351362	24953204	334	90999											
SYN3	8224	broad.mit.edu	37	chr22	33254197	33254197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaacatcagctcccaatGcactgggtgccaggccctcg	10	14	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33254197	T	T	33254197	1	4	88	0	1	0	0	0	0	0	0	0	15561	1334	46	3		3	SYN3	22	33254197	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	6902835	33254197	18050369	335	91000											
ZC3H7B	23264	broad.mit.edu	37	chr22	41739445	41739445	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctggcgactacacctacCgtgagggccttgagcacaag	14	12	0	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41739445	T	T	41739445	3	4	88	1	0	0	0	0	1	0	0	0	17699	652	23	4	1370	4	ZC3H7B	22	41739445	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	8485248	41739445	9565121	336	91001											
MLC1	23209	broad.mit.edu	37	chr22	50523397	50523397	+	Intron	DEL	T	-	-													caccagttctttatctggaaTaaaattatcatcggctttgg							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50523397	-	-	50523397	6	5	88	0	1	1	0	1	0	0	0	0	9705	1421	49	0		0	MLC1	22	50523397	Intron	DEL	T	TCGA-17-Z059-01A-01W-0747-08	8783952	50523397	781169	337	91002											
IL3RA	3563	broad.mit.edu	37	chrX	1499950	1499950	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagactctttccccgcatcCctcacatgaaagaccccatc	5	17	2	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1499950	G	G	1499950	3	3	88	1	0	0	0	0	1	0	0	0	7765	623	22	4	1053	4	IL3RA	23	1499950	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08		1499950	153770610	338	91003											
MAP3K15	389840	broad.mit.edu	37	chrX	19444422	19444422	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactgcaagattaattccCgaatagagggatgactggag	11	6	0	3			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19444422	A	A	19444422	1	1	88	0	1	0	0	0	0	0	0	0	9341	639	23	1		1	MAP3K15	23	19444422	5'UTR	SNP	C	TCGA-17-Z059-01A-01W-0747-08	17944472	19444422	135826138	339	91004											
APOO	79135	broad.mit.edu	37	chrX	23897065	23897065	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatggctcgcaatagtgTcggagctgtgagatgctttc	14	7	0	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23897065	C	C	23897065	2	2	88	1	0	0	0	0	0	0	0	1	815	1654	58	5		5	APOO	23	23897065	Silent	SNP	T	TCGA-17-Z059-01A-01W-0747-08	4452643	23897065	131373495	340	91005											
FAM47C	442444	broad.mit.edu	37	chrX	37029390	37029391	+	Frame_Shift_Ins	INS	-	C	C													tacttgaaaagcctgatgaaINScccgacattcttgacggtct							TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37029391	C	C	37029390	7	5	88	1	0	1	1	0	0	0	0	0	5622	40	2	0	2909	0	FAM47C	23	37029390	Frame_Shift_Ins	INS	-	TCGA-17-Z059-01A-01W-0747-08	13132325	37029390	118241170	341	91006											
PIN4	5303	broad.mit.edu	37	chrX	71401476	71401476	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtccaagagccaaaggacGgggtctgccccaagctgtgc	14	12	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71401476	T	T	71401476	1	4	88	0	1	0	0	0	0	0	0	0	12026	1131	39	1		1	PIN4	23	71401476	5'Flank	SNP	G	TCGA-17-Z059-01A-01W-0747-08	34372086	71401476	83869084	342	91007											
PCDH11X	27328	broad.mit.edu	37	chrX	91066131	91066131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttgggttattgaagccCtatcttttcagtgcatctat	8	8	3	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91066131	A	A	91066131	1	1	88	0	1	0	0	0	0	0	0	0	11602	696	24	2		2	PCDH11X	23	91066131	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	19664655	91066131	64204429	343	91008											
PCDH11X	27328	broad.mit.edu	37	chrX	91368358	91368358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaatagccacatctttaCggccaaactgtccacctcga	6	13	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91368358	A	A	91368358	1	1	88	0	1	0	0	0	0	0	0	0	11602	551	19	3		3	PCDH11X	23	91368358	Intron	SNP	C	TCGA-17-Z059-01A-01W-0747-08	302227	91368358	63902202	344	91009											
XPNPEP2	7512	broad.mit.edu	37	chrX	128881771	128881771	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcccaacttgtagcaacGcaggtcccggctgctattcc	8	16	0	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128881771	A	A	128881771	1	1	88	0	1	0	0	0	0	0	0	0	17570	1102	38	4		4	XPNPEP2	23	128881771	Intron	SNP	G	TCGA-17-Z059-01A-01W-0747-08	37513413	128881771	26388789	345	91010											
TFDP3	51270	broad.mit.edu	37	chrX	132351570	132351570	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggccgctggctgacctgctCctccacatactggtttctca	9	16	1	1			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132351570	A	A	132351570	4	1	88	1	0	0	0	0	0	1	0	0	15922	864	30	3	503	3	TFDP3	23	132351570	Nonsense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	3469799	132351570	22918990	346	91011											
ATP2B3	492	broad.mit.edu	37	chrX	152826267	152826267	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaacgcccgcaagatccaCggcgagaggaacgtgttcga	12	12	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152826267	T	T	152826267	2	4	88	1	0	0	0	0	0	0	0	1	1145	535	19	4		4	ATP2B3	23	152826267	Silent	SNP	C	TCGA-17-Z059-01A-01W-0747-08	20474697	152826267	2444293	347	91012											
PNCK	139728	broad.mit.edu	37	chrX	152936655	152936655	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccacacagcctggcacccAcagatgaatcatccagctgt	7	16	1	2			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152936655	T	T	152936655	1	4	88	0	1	0	0	0	0	0	0	0	12240	174	6	5		5	PNCK	23	152936655	Intron	SNP	A	TCGA-17-Z059-01A-01W-0747-08	110388	152936655	2333905	348	91013											
FLNA	2316	broad.mit.edu	37	chrX	153587758	153587758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctacagccaggcccaggcCgcccgtgccagctcccctgg	11	20	1	0			TCGA-17-Z059-01A-01W-0747-08	TCGA-17-Z059-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153587758	A	A	153587758	3	1	88	1	0	0	0	0	1	0	0	0	5991	652	23	1	3880	1	FLNA	23	153587758	Missense_Mutation	SNP	C	TCGA-17-Z059-01A-01W-0747-08	651103	153587758	1682802	349	91014											
ATAD3C	219293	broad.mit.edu	37	chr1	1387819	1387819	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagtgacagccacggtaaAcatactcataaaacagggct	8	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1387819	G	G	1387819	1	3	89	0	1	0	0	0	0	0	0	0	1079	58	2	5		5	ATAD3C	1	1387819	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08		1387819	247862802	1	91015											
KIF1B	23095	broad.mit.edu	37	chr1	10355184	10355185	+	Frame_Shift_Ins	INS	-	T	T													aatgaagacccactaatgtcINStgagtgcctactttattaca							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10355185	T	T	10355184	7	5	89	1	0	1	1	0	0	0	0	0	8354	913	32	0	1551	0	KIF1B	1	10355184	Frame_Shift_Ins	INS	-	TCGA-17-Z060-01A-01W-0747-08	8967365	10355184	238895437	2	91016											
PRAMEF12	390999	broad.mit.edu	37	chr1	12835550	12835550	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagtggggaccaggcaggTttcaaggagaaagagggatg	18	5	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12835550	A	A	12835550	1	1	89	0	1	0	0	0	0	0	0	0	12529	1740	60	5		5	PRAMEF12	1	12835550	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2480366	12835550	236415071	3	91017											
PADI4	23569	broad.mit.edu	37	chr1	17634806	17634806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgactcagcttgacatctGcaggtaagaggggggccttc	13	10	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17634806	T	T	17634806	3	4	89	1	0	0	0	0	1	0	0	0	11474	1319	46	3	91	3	PADI4	1	17634806	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4799256	17634806	231615815	4	91018											
HSPG2	3339	broad.mit.edu	37	chr1	22208080	22208080	+	Intron	DEL	G	-	-													gggcagcaatccagaaaggtGggaaagttctagtggaaatt							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22208080	-	-	22208080	6	5	89	0	1	1	0	1	0	0	0	0	7500	1363	47	0		0	HSPG2	1	22208080	Intron	DEL	G	TCGA-17-Z060-01A-01W-0747-08	4573274	22208080	227042541	5	91019											
LIN28A	79727	broad.mit.edu	37	chr1	26751741	26751741	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataagagttccttgtcttTtggtataataatggaaatta	8	3	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26751741	G	G	26751741	1	3	89	0	1	0	0	0	0	0	0	0	8878	1856	64	5		5	LIN28A	1	26751741	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	4543661	26751741	222498880	6	91020											
DCDC2B	149069	broad.mit.edu	37	chr1	32677383	32677383	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcccgtgactcgccacTtgtgtgatggggccattgga	13	12	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32677383	G	G	32677383	3	3	89	1	0	0	0	0	1	0	0	0	4319	1606	56	5	350	5	DCDC2B	1	32677383	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	5925642	32677383	216573238	7	91021											
HDAC1	3065	broad.mit.edu	37	chr1	32792491	32792491	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggcttcttggaggaaGgggagagtggcttagtaaca	16	7	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32792491	C	C	32792491	1	2	89	0	1	0	0	0	0	0	0	0	7071	1015	35	4		4	HDAC1	1	32792491	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	115108	32792491	216458130	8	91022											
CSMD2	114784	broad.mit.edu	37	chr1	34128334	34128334	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagtgagctcagcacagaCatttgaacaggtgctaacca	10	10	1	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34128334	T	T	34128334	1	4	89	0	1	0	0	0	0	0	0	0	3979	493	17	4		4	CSMD2	1	34128334	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1335843	34128334	215122287	9	91023											
CLSPN	63967	broad.mit.edu	37	chr1	36204707	36204707	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accatgctcagcccgtaactGattgcttttaaagacaacaa	6	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36204707	T	T	36204707	1	4	89	0	1	0	0	0	0	0	0	0	3592	1305	45	3		3	CLSPN	1	36204707	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2076373	36204707	213045914	10	91024											
EPHA10	284656	broad.mit.edu	37	chr1	38186529	38186530	+	Intron	INS	-	T	T													gtgcttcctgtgcccagggaINStgggaacacacatgctaagt							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38186530	T	T	38186529	6	5	89	0	1	1	1	0	0	0	0	0	5208	348	12	0		0	EPHA10	1	38186529	Intron	INS	-	TCGA-17-Z060-01A-01W-0747-08	1981822	38186529	211064092	11	91025											
KIAA0754	643314	broad.mit.edu	37	chr1	39876290	39876290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacctgtgccacccagaaGgcggccaaatgcagaacgca	11	14	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39876290	T	T	39876290	3	4	89	1	0	0	0	0	1	0	0	0	8262	1000	35	2	355	2	KIAA0754	1	39876290	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1689761	39876290	209374331	12	91026											
SCMH1	22955	broad.mit.edu	37	chr1	41536410	41536411	+	Intron	INS	-	A	A													cctctgtcaaaatgaatgggINSaaaaaaattgctacccatga							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41536411	A	A	41536410	6	5	89	0	1	1	1	0	0	0	0	0	14021	1189	41	0		0	SCMH1	1	41536410	Intron	INS	-	TCGA-17-Z060-01A-01W-0747-08	1660120	41536410	207714211	13	91027											
C1orf177	163747	broad.mit.edu	37	chr1	55277510	55277510	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatggggagaagggtaaccCatacaccaagctggaggaga	14	7	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55277510	T	T	55277510	3	4	89	1	0	0	0	0	1	0	0	0	2037	594	21	4	542	4	C1orf177	1	55277510	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	13741100	55277510	193973111	14	91028											
WDR78	79819	broad.mit.edu	37	chr1	67370902	67370902	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtgttgtctttatattGggatttggtttttctacagt	9	5	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67370902	A	A	67370902	2	1	89	1	0	0	0	0	0	0	0	1	17455	1335	47	4		4	WDR78	1	67370902	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	12093392	67370902	181879719	15	91029											
DEPDC1	55635	broad.mit.edu	37	chr1	68947177	68947177	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcatatcaacattttgactCattcgggaaatcatacgcat	7	9	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68947177	G	G	68947177	3	3	89	1	0	0	0	0	1	0	0	0	4479	826	29	4	570	4	DEPDC1	1	68947177	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1576275	68947177	180303444	16	91030											
LRRC7	57554	broad.mit.edu	37	chr1	70482257	70482257	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatttatttattaagatgaaCtataattgaaagtttgaatt	6	1	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70482257	G	G	70482257	1	3	89	0	1	0	0	0	0	0	0	0	9107	580	20	4		4	LRRC7	1	70482257	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1535080	70482257	178768364	17	91031											
AK5	26289	broad.mit.edu	37	chr1	77752792	77752792	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaaatggaggacagtcacGgagatcctttctaagaaatg	10	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77752792	A	A	77752792	3	1	89	1	0	0	0	0	1	0	0	0	443	1116	39	4	233	4	AK5	1	77752792	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7270535	77752792	171497829	18	91032											
COL24A1	255631	broad.mit.edu	37	chr1	86375841	86375841	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatttacaaatttggcgCtttatcttaaaattattaga	4	4	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86375841	G	G	86375841	1	3	89	0	1	0	0	0	0	0	0	0	3715	812	28	4		4	COL24A1	1	86375841	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	8623049	86375841	162874780	19	91033											
CLCA2	9635	broad.mit.edu	37	chr1	86898328	86898328	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagaacttgggggaccctaGagttcatctagtttttatct	9	7	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86898328	C	C	86898328	1	2	89	0	1	0	0	0	0	0	0	0	3489	957	33	4		4	CLCA2	1	86898328	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	522487	86898328	162352293	20	91034											
SH3GLB1	51100	broad.mit.edu	37	chr1	87185402	87185402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaacatattagtaggccgGgtgcagtggctcacacctgt	11	9	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87185402	T	T	87185402	1	4	89	0	1	0	0	0	0	0	0	0	14366	1247	43	2		2	SH3GLB1	1	87185402	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	287074	87185402	162065219	21	91035											
FNBP1L	54874	broad.mit.edu	37	chr1	93998519	93998519	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgaaggactattaaactcaGtgagtgttacagaggatttg	11	5	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93998519	C	C	93998519	3	2	89	1	0	0	0	0	1	0	0	0	6024	1029	36	4	710	4	FNBP1L	1	93998519	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	6813117	93998519	155252102	22	91036											
DBT	1629	broad.mit.edu	37	chr1	100672088	100672088	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccaatttctggaggcggttCagttcagtggcgatgtcaaa	12	9	4	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100672088	T	T	100672088	2	4	89	1	0	0	0	0	0	0	0	1	4291	813	29	4		4	DBT	1	100672088	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	6673569	100672088	148578533	23	91037											
CDC14A	8556	broad.mit.edu	37	chr1	100859098	100859098	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaaagcagaataatccagGactgtcaggtatctcaggta	9	8	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100859098	T	T	100859098	1	4	89	0	1	0	0	0	0	0	0	0	3086	1189	41	3		3	CDC14A	1	100859098	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	187010	100859098	148391523	24	91038											
COL11A1	1301	broad.mit.edu	37	chr1	103400526	103400526	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaaacaaaacttattacCccacaaaattgactggttat	3	9	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103400526	T	T	103400526	1	4	89	0	1	0	0	0	0	0	0	0	3699	638	22	4		4	COL11A1	1	103400526	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2541428	103400526	145850095	25	91039											
COL11A1	1301	broad.mit.edu	37	chr1	103444120	103444120	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgaagaggaataaattAaaaaataagcgtttttaaat	8	1	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103444120	C	C	103444120	1	2	89	0	1	0	0	0	0	0	0	0	3699	377	13	5		5	COL11A1	1	103444120	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	43594	103444120	145806501	26	91040											
WNT2B	7482	broad.mit.edu	37	chr1	113059924	113059924	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccaacttcaccgcagcccGccaaggctatcgccgtgcca	9	18	1	0	rs143127439		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113059924	A	A	113059924	3	1	89	1	0	0	0	0	1	0	0	0	17514	1087	38	4	1010	4	WNT2B	1	113059924	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9615804	113059924	136190697	27	91041											
PHTF1	10745	broad.mit.edu	37	chr1	114267487	114267487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccattttctcggctccCatcaccatttacagtttttc	3	13	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114267487	A	A	114267487	3	1	89	1	0	0	0	0	1	0	0	0	11957	594	21	2	1823	2	PHTF1	1	114267487	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1207563	114267487	134983134	28	91042											
DENND2C	163259	broad.mit.edu	37	chr1	115166223	115166223	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgaatcgtctgtgagttcCgatttcgaaagtgctgaata	10	8	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115166223	T	T	115166223	3	4	89	1	0	0	0	0	1	0	0	0	4470	652	23	4	1831	4	DENND2C	1	115166223	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	898736	115166223	134084398	29	91043											
FAM46C	54855	broad.mit.edu	37	chr1	118166707	118166707	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgggaaccccaatagGgctagggctctcaggtaggg	15	10	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118166707	T	T	118166707	1	4	89	0	1	0	0	0	0	0	0	0	5618	1247	43	2		2	FAM46C	1	118166707	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3000484	118166707	131083914	30	91044											
HFE2	148738	broad.mit.edu	37	chr1	145416843	145416843	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacttagagaagctgcatctCttcccctcagatgctggggt	11	11	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145416843	G	G	145416843	2	3	89	1	0	0	0	0	0	0	0	1	7149	900	32	4		4	HFE2	1	145416843	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	27250136	145416843	103833778	31	91045											
FCGR1A	2209	broad.mit.edu	37	chr1	149754121	149754121	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggctaacaggtatgagCatgggaaaagcatgtttcaa	13	5	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149754121	A	A	149754121	1	1	89	0	1	0	0	0	0	0	0	0	5836	725	25	3		3	FCGR1A	1	149754121	5'Flank	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4337278	149754121	99496500	32	91046											
C1orf54	79630	broad.mit.edu	37	chr1	150245265	150245265	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctgtgccacttatcctGggtaagtccactcctctctc	7	14	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150245265	T	T	150245265	2	4	89	1	0	0	0	0	0	0	0	1	2068	1362	47	2		2	C1orf54	1	150245265	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	491144	150245265	99005356	33	91047											
LCE1E	353135	broad.mit.edu	37	chr1	152760201	152760201	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggttccagcaaaagcttgaAgtcttgcctggagaatccct	10	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152760201	T	T	152760201	1	4	89	0	1	0	0	0	0	0	0	0	8735	87	3	5		5	LCE1E	1	152760201	3'UTR	SNP	A	TCGA-17-Z060-01A-01W-0747-08	2514936	152760201	96490420	34	91048											
SMG5	23381	broad.mit.edu	37	chr1	156237397	156237397	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggttgggtgaggagggCaggtagaagaggcagaggtt	21	3	0	5			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156237397	G	G	156237397	2	3	89	1	0	0	0	0	0	0	0	1	14910	697	25	4		4	SMG5	1	156237397	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3477196	156237397	93013224	35	91049											
INSRR	3645	broad.mit.edu	37	chr1	156815041	156815041	+	Frame_Shift_Del	DEL	C	-	-													tctcgaaatccgagctgttgCcccccagccggaggggccca							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156815041	-	-	156815041	7	5	89	1	0	1	0	1	0	0	0	0	7844	739	26	0	1672	0	INSRR	1	156815041	Frame_Shift_Del	DEL	C	TCGA-17-Z060-01A-01W-0747-08	577644	156815041	92435580	36	91050											
NTRK1	4914	broad.mit.edu	37	chr1	156845459	156845459	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatacttcagtgatgcctGtgaggggctatgctgggtca	13	8	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156845459	T	T	156845459	5	4	89	1	0	0	0	0	0	0	1	0	10801	1391	48	3	1678	3	NTRK1	1	156845459	Splice_Site	SNP	G	TCGA-17-Z060-01A-01W-0747-08	30418	156845459	92405162	37	91051											
LY9	4063	broad.mit.edu	37	chr1	160789137	160789137	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccagccttctgttccagcCaagctgaggccccagcggat	10	16	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160789137	T	T	160789137	4	4	89	1	0	0	0	0	0	1	0	0	9189	595	21	4	1629	4	LY9	1	160789137	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3943678	160789137	88461484	38	91052											
OLFML2B	25903	broad.mit.edu	37	chr1	161970075	161970075	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcgcgtctgcagaagttcGatggagttgatctgctggga	16	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161970075	A	A	161970075	2	1	89	1	0	0	0	0	0	0	0	1	10953	1048	37	4		4	OLFML2B	1	161970075	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1180938	161970075	87280546	39	91053											
DDR2	4921	broad.mit.edu	37	chr1	162745783	162745783	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatggagcagctgccctttGgggaaacgcaagggattcat	13	8	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162745783	A	A	162745783	1	1	89	0	1	0	0	0	0	0	0	0	4370	1363	47	4		4	DDR2	1	162745783	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	775708	162745783	86504838	40	91054											
TNN	63923	broad.mit.edu	37	chr1	175048440	175048441	+	Intron	INS	-	A	A													cacgcacaacccttcaacccINSaacctactgtttctcctctc							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175048441	A	A	175048440	6	5	89	0	1	1	1	0	0	0	0	0	16446	609	21	0		0	TNN	1	175048440	Intron	INS	-	TCGA-17-Z060-01A-01W-0747-08	12302657	175048440	74202181	41	91055											
TNR	7143	broad.mit.edu	37	chr1	175323782	175323782	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgcaatggccattgtcatCctctccatcccacaataagg	6	13	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175323782	A	A	175323782	1	1	89	0	1	0	0	0	0	0	0	0	16461	870	30	3		3	TNR	1	175323782	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	275342	175323782	73926839	42	91056											
ASTN1	460	broad.mit.edu	37	chr1	176852242	176852242	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaatgatttggtcctcaatCtctagagtagagaaggagac	10	7	2	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176852242	A	A	176852242	1	1	89	0	1	0	0	0	0	0	0	0	1068	928	32	3		3	ASTN1	1	176852242	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1528460	176852242	72398379	43	91057											
TDRD5	163589	broad.mit.edu	37	chr1	179565061	179565061	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaactgaagtcattcActtatttcaaatttgactaa	3	6	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179565061	C	C	179565061	1	2	89	0	1	0	0	0	0	0	0	0	15855	174	6	5		5	TDRD5	1	179565061	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	2712819	179565061	69685560	44	91058											
RGS16	6004	broad.mit.edu	37	chr1	182569327	182569327	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttttttgtcctcttgCacttgctttgcagaacctgc	6	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182569327	A	A	182569327	1	1	89	0	1	0	0	0	0	0	0	0	13407	725	25	3		3	RGS16	1	182569327	3'UTR	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3004266	182569327	66681294	45	91059											
RNF2	6045	broad.mit.edu	37	chr1	185060664	185060664	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatatgtttgagcttgtccaTaataaaaaattaagtagctt	6	4	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185060664	A	A	185060664	1	1	89	0	1	0	0	0	0	0	0	0	13583	1421	49	5		5	RNF2	1	185060664	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2491337	185060664	64189957	46	91060											
FAM5C	339479	broad.mit.edu	37	chr1	190130042	190130042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaatgtcaaaattcaaCactttaattatgaaacaatt	3	5	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190130042	A	A	190130042	1	1	89	0	1	0	0	0	0	0	0	0	5645	493	17	3		3	FAM5C	1	190130042	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5069378	190130042	59120579	47	91061											
RGS18	64407	broad.mit.edu	37	chr1	192127796	192127796	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacattgcttttcttttctcAaataaatatgtgtgaatcaa	4	6	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192127796	T	T	192127796	3	4	89	1	0	0	0	0	1	0	0	0	13409	130	5	5	31	5	RGS18	1	192127796	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	1997754	192127796	57122825	48	91062											
CFHR5	81494	broad.mit.edu	37	chr1	196965399	196965399	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggattgtataaagtgtaTaaatctggctagaattacaa	9	3	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196965399	A	A	196965399	1	1	89	0	1	0	0	0	0	0	0	0	3318	1421	49	5		5	CFHR5	1	196965399	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	4837603	196965399	52285222	49	91063											
CRB1	23418	broad.mit.edu	37	chr1	197404574	197404574	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatggcaactgctctgacaGagttgcagcctaccactgca	9	14	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197404574	T	T	197404574	3	4	89	1	0	0	0	0	1	0	0	0	3880	942	33	3	3615	3	CRB1	1	197404574	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	439175	197404574	51846047	50	91064											
KIF14	9928	broad.mit.edu	37	chr1	200584453	200584453	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagtatatttaaacacttCtggataattgcatttccaat	4	6	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200584453	T	T	200584453	1	4	89	0	1	0	0	0	0	0	0	0	8346	928	32	4		4	KIF14	1	200584453	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3179879	200584453	48666168	51	91065											
IGFN1	91156	broad.mit.edu	37	chr1	201190883	201190883	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgttactggtgagtgcTgcctccttccccgacccctg	10	16	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201190883	A	A	201190883	1	1	89	0	1	0	0	0	0	0	0	0	7660	1595	55	5		5	IGFN1	1	201190883	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	606430	201190883	48059738	52	91066											
ATP2B4	493	broad.mit.edu	37	chr1	203678661	203678661	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggcgcctctgagatcaTcttgcgcaagtgagcacccc	11	14	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203678661	C	C	203678661	3	2	89	1	0	0	0	0	1	0	0	0	1146	1435	50	5	1828	5	ATP2B4	1	203678661	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2487778	203678661	45571960	53	91067											
LAX1	54900	broad.mit.edu	37	chr1	203741361	203741361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcttagatctggtttcaCtgcaaacaaacagcatgccc	9	11	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203741361	A	A	203741361	1	1	89	0	1	0	0	0	0	0	0	0	8720	580	20	3		3	LAX1	1	203741361	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	62700	203741361	45509260	54	91068											
NUCKS1	64710	broad.mit.edu	37	chr1	205687366	205687366	+	3'UTR	DEL	T	-	-													ctcttttttctttttttttcTttttttttttaataaaatct							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	205687366	-	-	205687366	6	5	89	0	1	1	0	1	0	0	0	0	10815	1624	56	0		0	NUCKS1	1	205687366	3'UTR	DEL	T	TCGA-17-Z060-01A-01W-0747-08	1946005	205687366	43563255	55	91069											
LAMB3	3914	broad.mit.edu	37	chr1	209807600	209807600	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgctgaaatatccttcctCagcaaagaggataagcagca	9	9	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209807600	A	A	209807600	1	1	89	0	1	0	0	0	0	0	0	0	8684	841	29	3		3	LAMB3	1	209807600	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4120234	209807600	39443021	56	91070											
KCNH1	3756	broad.mit.edu	37	chr1	211034006	211034006	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagcctgcattacaggtctGataaatgctgtgatacattc	9	8	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211034006	T	T	211034006	1	4	89	0	1	0	0	0	0	0	0	0	8101	1305	45	3		3	KCNH1	1	211034006	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1226406	211034006	38216615	57	91071											
NEK2	4751	broad.mit.edu	37	chr1	211843896	211843896	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattttcttcttataagtaaGtttcccaaccttggcactat	5	9	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211843896	A	A	211843896	1	1	89	0	1	0	0	0	0	0	0	0	10419	1044	36	4		4	NEK2	1	211843896	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	809890	211843896	37406725	58	91072											
HHIPL2	79802	broad.mit.edu	37	chr1	222716696	222716696	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgtaaggtgatggctacAtcccattaaacagccttaac	7	10	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222716696	T	T	222716696	1	4	89	0	1	0	0	0	0	0	0	0	7161	232	8	5		5	HHIPL2	1	222716696	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	10872800	222716696	26533925	59	91073											
DISP1	84976	broad.mit.edu	37	chr1	223165064	223165064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttcaaatactgcctaAacaaaaaatttaaatgtaaa	2	8	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223165064	T	T	223165064	1	4	89	0	1	0	0	0	0	0	0	0	4579	29	1	5		5	DISP1	1	223165064	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	448368	223165064	26085557	60	91074											
OBSCN	84033	broad.mit.edu	37	chr1	228433466	228433466	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatggaagtcccgcccaAgggccttttttctcataaag	10	10	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228433466	T	T	228433466	1	4	89	0	1	0	0	0	0	0	0	0	10907	87	3	5		5	OBSCN	1	228433466	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	5268402	228433466	20817155	61	91075											
NUP133	55746	broad.mit.edu	37	chr1	229611358	229611358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactgccaaaggcagagcCctgtgcccagcaccctgcgc	12	16	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229611358	A	A	229611358	1	1	89	0	1	0	0	0	0	0	0	0	10849	638	22	2		2	NUP133	1	229611358	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1177892	229611358	19639263	62	91076											
PGBD5	79605	broad.mit.edu	37	chr1	230468405	230468405	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctttcctcgctgcttccCcgctgcttccacacagccgc	7	20	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230468405	T	T	230468405	1	4	89	0	1	0	0	0	0	0	0	0	11879	638	22	4		4	PGBD5	1	230468405	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	857047	230468405	18782216	63	91077											
EDARADD	128178	broad.mit.edu	37	chr1	236645850	236645850	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagctgatggagctctgCaggctctaccacagggccga	14	13	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236645850	A	A	236645850	4	1	89	1	0	0	0	0	0	1	0	0	4946	718	25	3	606	3	EDARADD	1	236645850	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	6177445	236645850	12604771	64	91078											
ACTN2	88	broad.mit.edu	37	chr1	236898981	236898981	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagagccatcatgacgtaCgtctcttgcttctaccacgc	8	13	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236898981	A	A	236898981	4	1	89	1	0	0	0	0	0	1	0	0	205	547	19	3	774	3	ACTN2	1	236898981	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	253131	236898981	12351640	65	91079											
MTR	4548	broad.mit.edu	37	chr1	237026969	237026969	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcagtggatgttagaggTtattttttatttctttttgc	10	3	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237026969	G	G	237026969	1	3	89	0	1	0	0	0	0	0	0	0	10052	1740	60	5		5	MTR	1	237026969	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	127988	237026969	12223652	66	91080											
RYR2	6262	broad.mit.edu	37	chr1	237551398	237551398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttacagggtatctcattGgtggtgatgtcctcaggttg	12	8	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237551398	T	T	237551398	3	4	89	1	0	0	0	0	1	0	0	0	13880	1348	47	2	726	2	RYR2	1	237551398	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	524429	237551398	11699223	67	91081											
RYR2	6262	broad.mit.edu	37	chr1	237969450	237969450	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatagtccttcctctaccTagcctggtatatgactatgt	6	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237969450	C	C	237969450	3	2	89	1	0	0	0	0	1	0	0	0	13880	1522	53	5	14559	5	RYR2	1	237969450	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	418052	237969450	11281171	68	91082											
WDR64	128025	broad.mit.edu	37	chr1	241886443	241886443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagatccaaaccaaggccaGccccttagcacatcaatcac	6	16	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241886443	T	T	241886443	1	4	89	0	1	0	0	0	0	0	0	0	17442	986	34	3		3	WDR64	1	241886443	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3916993	241886443	7364178	69	91083											
NLRP3	114548	broad.mit.edu	37	chr1	247588134	247588134	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccaggagcacggcctctgCgcccacctctgggggctctg	14	16	3	0	rs104895398	byFrequency	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247588134	G	G	247588134	3	3	89	1	0	0	0	0	1	0	0	0	10573	776	27	4	1399	4	NLRP3	1	247588134	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5701691	247588134	1662487	70	91084											
SH3BP5L	80851	broad.mit.edu	37	chr1	249110993	249110993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatacttccaaggaccagcCcaagcacataaggaaaagga	9	10	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249110993	A	A	249110993	1	1	89	0	1	0	0	0	0	0	0	0	14361	638	22	2		2	SH3BP5L	1	249110993	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1522859	249110993	139628	71	91085											
TPO	7173	broad.mit.edu	37	chr2	1480976	1480976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacctgtccacggccaaccCgcggcagcagatgaacgggt	13	14	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1480976	A	A	1480976	3	1	89	1	0	0	0	0	1	0	0	0	16534	652	23	1	964	1	TPO	2	1480976	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08		1480976	241718397	72	91086											
TAF1B	9014	broad.mit.edu	37	chr2	9994427	9994427	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtcataacctgaatcaCccaccactcatttcccttcc	3	16	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9994427	T	T	9994427	1	4	89	0	1	0	0	0	0	0	0	0	15639	522	18	4		4	TAF1B	2	9994427	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	8513451	9994427	233204946	73	91087											
APOB	338	broad.mit.edu	37	chr2	21263872	21263872	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcaaggctttgccctcAgggttgaagccatacacctc	9	13	2	1	rs150182638		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21263872	C	C	21263872	2	2	89	1	0	0	0	0	0	0	0	1	787	175	7	5		5	APOB	2	21263872	Silent	SNP	A	TCGA-17-Z060-01A-01W-0747-08	11269445	21263872	221935501	74	91088											
C2orf39	92749	broad.mit.edu	37	chr2	26676332	26676332	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagaaggaagaagaggagGagaccccaccctccccctgg	15	12	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26676332	T	T	26676332	4	4	89	1	0	0	0	0	0	1	0	0	2186	1175	41	3	1888	3	C2orf39	2	26676332	Nonsense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5412460	26676332	216523041	75	91089											
PREB	10113	broad.mit.edu	37	chr2	27356508	27356508	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagccagtgccaagttcaTggtggcccgtgtctctgtgt	12	12	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27356508	C	C	27356508	3	2	89	1	0	0	0	0	1	0	0	0	12576	1464	51	5	1068	5	PREB	2	27356508	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	680176	27356508	215842865	76	91090											
ALK	238	broad.mit.edu	37	chr2	29498224	29498224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacaatgaggccatgggcCatgggggttgggggacagag	21	6	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29498224	T	T	29498224	1	4	89	0	1	0	0	0	0	0	0	0	525	609	21	4		4	ALK	2	29498224	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2141716	29498224	213701149	77	91091											
CDKL4	344387	broad.mit.edu	37	chr2	39406328	39406328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacttttgagcggaagtacCtgttggcgtcttctgtttct	10	8	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39406328	A	A	39406328	3	1	89	1	0	0	0	0	1	0	0	0	3186	680	24	2	24	2	CDKL4	2	39406328	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9908104	39406328	203793045	78	91092											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44010827	44010827	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaattcttagcaaatccttAgtataacctttaagagcgcc	5	9	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44010827	G	G	44010827	1	3	89	0	1	0	0	0	0	0	0	0	4887	435	15	5		5	DYNC2LI1	2	44010827	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	4604499	44010827	199188546	79	91093											
DYSF	8291	broad.mit.edu	37	chr2	71755423	71755423	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgactggtgtgtccctcttCccagtggacgatgccgtgat	13	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71755423	A	A	71755423	1	1	89	0	1	0	0	0	0	0	0	0	4899	870	30	3		3	DYSF	2	71755423	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	27744596	71755423	171443950	80	91094											
TGOLN2	10618	broad.mit.edu	37	chr2	85553611	85553611	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaaccccactcccctccgGaaggccgctgtcgacttacc	9	18	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85553611	A	A	85553611	1	1	89	0	1	0	0	0	0	0	0	0	15959	1189	41	4		4	TGOLN2	2	85553611	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	13798188	85553611	157645762	81	91095											
ANKRD36B	57730	broad.mit.edu	37	chr2	98177030	98177030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtgtactgaatcagaaCgtgcagcttatatgaactcc	9	9	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98177030	A	A	98177030	1	1	89	0	1	0	0	0	0	0	0	0	666	551	19	3		3	ANKRD36B	2	98177030	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	12623419	98177030	145022343	82	91096											
VWA3B	200403	broad.mit.edu	37	chr2	98809610	98809610	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaagaaagccaaattcagaGaagtactcccttttgttagt	7	8	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98809610	A	A	98809610	1	1	89	0	1	0	0	0	0	0	0	0	17368	957	33	4		4	VWA3B	2	98809610	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	632580	98809610	144389763	83	91097											
IL1R2	7850	broad.mit.edu	37	chr2	102625953	102625953	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaatcaggatcagtcccaGgtgcagggaggttttatgat	13	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102625953	A	A	102625953	1	1	89	0	1	0	0	0	0	0	0	0	7729	1015	35	4		4	IL1R2	2	102625953	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3816343	102625953	140573420	84	91098											
BCL2L11	10018	broad.mit.edu	37	chr2	111921924	111921924	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcggttctcttgtggaGggggcaggtgacgtttcaga	17	8	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111921924	T	T	111921924	1	4	89	0	1	0	0	0	0	0	0	0	1374	1015	35	2		2	BCL2L11	2	111921924	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9295971	111921924	131277449	85	91099											
IL1RN	3557	broad.mit.edu	37	chr2	113890416	113890416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgacgaaggcgtcatgGtcaccaaattctacttccag	9	12	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113890416	A	A	113890416	3	1	89	1	0	0	0	0	1	0	0	0	7735	1261	44	4	597	4	IL1RN	2	113890416	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1968492	113890416	129308957	86	91100											
DPP10	57628	broad.mit.edu	37	chr2	115200315	115200315	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgatctctagttcattctgGaactccgcctgggattgtgc	10	10	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115200315	T	T	115200315	1	4	89	0	1	0	0	0	0	0	0	0	4767	1189	41	3		3	DPP10	2	115200315	5'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1309899	115200315	127999058	87	91101											
MYO7B	4648	broad.mit.edu	37	chr2	128331592	128331592	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcggggtgatcgagggcgcGcgcatcgagcaatttctcct	15	11	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128331592	A	A	128331592	2	1	89	1	0	0	0	0	0	0	0	1	10177	1074	38	4		4	MYO7B	2	128331592	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	13131277	128331592	114867781	88	91102											
UGGT1	56886	broad.mit.edu	37	chr2	128914952	128914952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttcattttatatttttGtttgtggctgtagttgtctt	8	4	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128914952	T	T	128914952	1	4	89	0	1	0	0	0	0	0	0	0	17067	1392	48	3		3	UGGT1	2	128914952	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	583360	128914952	114284421	89	91103											
MGAT5	4249	broad.mit.edu	37	chr2	135011889	135011889	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagccagagtgagaccagcAgactctcacactcaacctac	9	14	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135011889	T	T	135011889	1	4	89	0	1	0	0	0	0	0	0	0	9641	203	7	5		5	MGAT5	2	135011889	5'UTR	SNP	A	TCGA-17-Z060-01A-01W-0747-08	6096937	135011889	108187484	90	91104											
MCM6	4175	broad.mit.edu	37	chr2	136603920	136603920	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgatttatgtcttcattgTagccattgatcccgttcaca	6	10	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136603920	C	C	136603920	3	2	89	1	0	0	0	0	1	0	0	0	9484	1638	57	5	381	5	MCM6	2	136603920	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	1592031	136603920	106595453	91	91105											
LRP1B	53353	broad.mit.edu	37	chr2	141665729	141665729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattattgtcttcagtcaCaggcagaattacttgtcttt	7	9	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141665729	A	A	141665729	1	1	89	0	1	0	0	0	0	0	0	0	9042	493	17	3		3	LRP1B	2	141665729	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5061809	141665729	101533644	92	91106											
NEB	4703	broad.mit.edu	37	chr2	152512312	152512312	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacgtgggagctgtgtggaCggccactgttctctgtacct	13	11	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152512312	T	T	152512312	1	4	89	0	1	0	0	0	0	0	0	0	10397	551	19	4		4	NEB	2	152512312	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	10846583	152512312	90687061	93	91107											
NEB	4703	broad.mit.edu	37	chr2	152539283	152539283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtcagctttgtattcaaCctaaaacaccaagagaaagg	8	8	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152539283	A	A	152539283	3	1	89	1	0	0	0	0	1	0	0	0	10397	521	18	3	23466	3	NEB	2	152539283	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	26971	152539283	90660090	94	91108											
STAM2	10254	broad.mit.edu	37	chr2	152980221	152980221	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aataagggtctatatattctCattctgaaaatctaggaaaa	6	5	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152980221	A	A	152980221	1	1	89	0	1	0	0	0	0	0	0	0	15367	841	29	3		3	STAM2	2	152980221	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	440938	152980221	90219152	95	91109											
DPP4	1803	broad.mit.edu	37	chr2	162862235	162862235	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaataggttataaaataggTataggtcctcatctcttact	6	6	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162862235	C	C	162862235	1	2	89	0	1	0	0	0	0	0	0	0	4769	1653	57	5		5	DPP4	2	162862235	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	9882014	162862235	80337138	96	91110											
DPP4	1803	broad.mit.edu	37	chr2	162902089	162902089	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactgcccatcaggagataTtgaataatcattgatagaat	7	6	2	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162902089	C	C	162902089	3	2	89	1	0	0	0	0	1	0	0	0	4769	1493	52	5	2069	5	DPP4	2	162902089	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	39854	162902089	80297284	97	91111											
LRP2	4036	broad.mit.edu	37	chr2	170063141	170063141	+	Missense_Mutation	SNP	C	A	A													cagtcacattttggggtgtgCaatccaggcagagcaaagca							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170063141	A	A	170063141	3	1	89	1	0	0	0	0	1	0	0	0	9043	709	25	3	7042	3	LRP2	2	170063141	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	7161052	170063141	73136232	98	91112	407	2									
LRP2	4036	broad.mit.edu	37	chr2	170063148	170063148	+	Missense_Mutation	SNP	G	A	A													attttggggtgtgcaatccaGgcagagcaaagcagagatga							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170063148	A	A	170063148	3	1	89	1	0	0	0	0	1	0	0	0	9043	1000	35	4	7049	4	LRP2	2	170063148	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7	170063148	73136225	99	91113	407	2									
CDCA7	83879	broad.mit.edu	37	chr2	174232113	174232113	+	Intron	DEL	G	-	-													gaagagtggttatctctggcGgggtggagactgactggaac							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	174232113	-	-	174232113	6	5	89	0	1	1	0	1	0	0	0	0	3120	1131	39	0		0	CDCA7	2	174232113	Intron	DEL	G	TCGA-17-Z060-01A-01W-0747-08	4168965	174232113	68967260	100	91114											
TTN	7273	broad.mit.edu	37	chr2	179489860	179489860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgaattattttgttatGctaaaaagtaaaatcagact	6	4	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179489860	T	T	179489860	1	4	89	0	1	0	0	0	0	0	0	0	16861	1334	46	3		3	TTN	2	179489860	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5257747	179489860	63709513	101	91115											
ANKAR	150709	broad.mit.edu	37	chr2	190557960	190557960	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttttgcacgttagtagaGaacaaagaaaatgacaaaat	7	4	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190557960	A	A	190557960	1	1	89	0	1	0	0	0	0	0	0	0	623	957	33	4		4	ANKAR	2	190557960	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	11068100	190557960	52641413	102	91116											
FAM119A	151194	broad.mit.edu	37	chr2	208489080	208489080	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaaattccgtggtctccTcatagggcacgagggccatt	10	13	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	208489080	G	G	208489080	3	3	89	1	0	0	0	0	1	0	0	0	5459	1551	54	5	648	5	FAM119A	2	208489080	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	17931120	208489080	34710293	103	91117											
FN1	2335	broad.mit.edu	37	chr2	216230044	216230044	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctaaagtgtcctgtaataaCattaaatcatgactcatttt	5	7	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216230044	T	T	216230044	1	4	89	0	1	0	0	0	0	0	0	0	6020	493	17	4		4	FN1	2	216230044	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	7740964	216230044	26969329	104	91118											
OBSL1	23363	broad.mit.edu	37	chr2	220422840	220422840	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcactggaggctctggagaAgagaggaaggtgtcatccca	15	8	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220422840	C	C	220422840	1	2	89	0	1	0	0	0	0	0	0	0	10908	87	3	5		5	OBSL1	2	220422840	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	4192796	220422840	22776533	105	91119											
SGPP2	130367	broad.mit.edu	37	chr2	223317599	223317599	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattctctggttctggaacCaggtcttcacctgtttgtag	9	10	5	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223317599	T	T	223317599	1	4	89	0	1	0	0	0	0	0	0	0	14333	609	21	4		4	SGPP2	2	223317599	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2894759	223317599	19881774	106	91120											
SP110	3431	broad.mit.edu	37	chr2	231050917	231050917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctcatgttcccagcccCtaccctttcaggagttatct	5	16	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231050917	A	A	231050917	1	1	89	0	1	0	0	0	0	0	0	0	15075	696	24	2		2	SP110	2	231050917	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	7733318	231050917	12148456	107	91121											
CAB39	51719	broad.mit.edu	37	chr2	231658035	231658035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagaatattttgttcatGttattgaaagggtatgtaca	8	4	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231658035	T	T	231658035	3	4	89	1	0	0	0	0	1	0	0	0	2551	1377	48	3	397	3	CAB39	2	231658035	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	607118	231658035	11541338	108	91122											
EIF4E2	9470	broad.mit.edu	37	chr2	233421190	233421190	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagcacacagaaagatggtGagaaggaaaaaacggaacga	12	6	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233421190	T	T	233421190	4	4	89	1	0	0	0	0	0	1	0	0	5072	1291	45	3	91	3	EIF4E2	2	233421190	Nonsense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1763155	233421190	9778183	109	91123											
INPP5D	3635	broad.mit.edu	37	chr2	233925269	233925269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacaggcaaggacgggagCttcctcgtgcgtgccagcga	16	11	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233925269	A	A	233925269	3	1	89	1	0	0	0	0	1	0	0	0	7826	796	28	3	83	3	INPP5D	2	233925269	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	504079	233925269	9274104	110	91124											
CXCR7	57007	broad.mit.edu	37	chr2	237490163	237490163	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccagagtctcagagaCggagtactctgccttggagc	12	12	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237490163	T	T	237490163	3	4	89	1	0	0	0	0	1	0	0	0	4129	536	19	4	1057	4	CXCR7	2	237490163	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3564894	237490163	5709210	111	91125											
STK25	10494	broad.mit.edu	37	chr2	242437747	242437747	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatggggccctgctccccgTcctccgcctcgccatcactg	10	19	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242437747	A	A	242437747	3	1	89	1	0	0	0	0	1	0	0	0	15412	1667	58	5	361	5	STK25	2	242437747	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	4947584	242437747	761626	112	91126											
ING5	84289	broad.mit.edu	37	chr2	242651391	242651391	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcatcttgattatttttcAgaaggccggggtcagaaaga	11	6	3	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242651391	T	T	242651391	5	4	89	1	0	0	0	0	0	0	1	0	7809	202	7	5	405	5	ING5	2	242651391	Splice_Site	SNP	A	TCGA-17-Z060-01A-01W-0747-08	213644	242651391	547982	113	91127											
ITPR1	3708	broad.mit.edu	37	chr3	4774722	4774722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgaatattcgtccctcGgtgatgcattaaatgcagaa	9	7	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4774722	T	T	4774722	1	4	89	0	1	0	0	0	0	0	0	0	7990	1131	39	1		1	ITPR1	3	4774722	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08		4774722	193247708	114	91128											
HDAC11	79885	broad.mit.edu	37	chr3	13546159	13546159	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagaactcagacacaccGctgcttccccctgcagtgcc	8	18	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13546159	T	T	13546159	2	4	89	1	0	0	0	0	0	0	0	1	7073	1074	38	3		3	HDAC11	3	13546159	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	8771437	13546159	184476271	115	91129											
AZI2	64343	broad.mit.edu	37	chr3	28368430	28368430	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagttcccagtatgcatgcTgcatattatcactgaaataa	6	9	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28368430	G	G	28368430	3	3	89	1	0	0	0	0	1	0	0	0	1246	1580	55	5	527	5	AZI2	3	28368430	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	14822271	28368430	169654000	116	91130											
DCLK3	85443	broad.mit.edu	37	chr3	36759392	36759392	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaagtaaaggctgagacatGacatgttgacagtccaactc	11	8	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36759392	T	T	36759392	1	4	89	0	1	0	0	0	0	0	0	0	4326	1305	45	3		3	DCLK3	3	36759392	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	8390962	36759392	161263038	117	91131											
ACVR2B	93	broad.mit.edu	37	chr3	38518702	38518702	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccctcagggtggcctggcAcccaggactgggagtagggg	17	12	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38518702	T	T	38518702	1	4	89	0	1	0	0	0	0	0	0	0	224	174	6	5		5	ACVR2B	3	38518702	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	1759310	38518702	159503728	118	91132											
SCN5A	6331	broad.mit.edu	37	chr3	38595865	38595866	+	Missense_Mutation	DNP	CC	TT	TT													ccagcttgacaatacactcgCctgtgaagatggccacaaag							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38595866	TT	TT	38595865	3	4	89	1	0	0	0	0	1	0	0	0	14035	753	26	4	1340	4	SCN5A	3	38595865	Missense_Mutation	DNP	CC	TCGA-17-Z060-01A-01W-0747-08	77163	38595865	159426565	119	91133											
SCN11A	11280	broad.mit.edu	37	chr3	38904605	38904605	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcaaattttaagaataaaGaaggatggcattacggaaat	9	4	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38904605	A	A	38904605	1	1	89	0	1	0	0	0	0	0	0	0	14026	957	33	4		4	SCN11A	3	38904605	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	308740	38904605	159117825	120	91134											
TGM4	7047	broad.mit.edu	37	chr3	44929222	44929222	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacacaccctggtggtgctcGacccgaggacgccctcagac	11	16	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44929222	C	C	44929222	3	2	89	1	0	0	0	0	1	0	0	0	15955	1058	37	4	245	4	TGM4	3	44929222	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	6024617	44929222	153093208	121	91135											
PTH1R	5745	broad.mit.edu	37	chr3	46935371	46935371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcgccggaaagtcctgcCtgtggtctgaccttcggctt	13	13	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46935371	T	T	46935371	1	4	89	0	1	0	0	0	0	0	0	0	12864	696	24	4		4	PTH1R	3	46935371	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2006149	46935371	151087059	122	91136											
UQCRC1	7384	broad.mit.edu	37	chr3	48637210	48637210	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacctcagccagtcagcatCatccaactagcagagatctc	6	16	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48637210	T	T	48637210	1	4	89	0	1	0	0	0	0	0	0	0	17145	841	29	4		4	UQCRC1	3	48637210	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1701839	48637210	149385220	123	91137											
CELSR3	1951	broad.mit.edu	37	chr3	48689361	48689361	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggtcccggcagtctgcgtGaggtgggcagggcccagagg	20	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48689361	C	C	48689361	3	2	89	1	0	0	0	0	1	0	0	0	3253	1290	45	4	4162	4	CELSR3	3	48689361	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	52151	48689361	149333069	124	91138											
CACNA2D3	55799	broad.mit.edu	37	chr3	54596841	54596841	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacagaccctgcaattgtcAatggggtttattggtctgaa	10	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54596841	C	C	54596841	3	2	89	1	0	0	0	0	1	0	0	0	2576	130	5	5	581	5	CACNA2D3	3	54596841	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	5907480	54596841	143425589	125	91139											
FAM107A	11170	broad.mit.edu	37	chr3	58555535	58555535	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccactctctgtattctggcCgggccatcaggcccccaatg	9	16	3	0	rs11539089		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58555535	T	T	58555535	3	4	89	1	0	0	0	0	1	0	0	0	5435	652	23	4	393	4	FAM107A	3	58555535	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3958694	58555535	139466895	126	91140											
PRICKLE2	166336	broad.mit.edu	37	chr3	64160315	64160315	+	Intron	SNP	C	A	A													cagagttcaaagatctaagcCttgatgataatgaggggaaa							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64160315	A	A	64160315	1	1	89	0	1	0	0	0	0	0	0	0	12593	696	24	2		2	PRICKLE2	3	64160315	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5604780	64160315	133862115	127	91141	408	2									
PRICKLE2	166336	broad.mit.edu	37	chr3	64160317	64160317	+	Intron	SNP	T	A	A													gagttcaaagatctaagcctTgatgataatgaggggaaatg							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64160317	A	A	64160317	1	1	89	0	1	0	0	0	0	0	0	0	12593	1827	63	5		5	PRICKLE2	3	64160317	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2	64160317	133862113	128	91142	408	2									
PRICKLE2	166336	broad.mit.edu	37	chr3	64160780	64160780	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagtctcctacaatcaagtCaaatcaaactgtttccaaag	5	10	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64160780	G	G	64160780	1	3	89	0	1	0	0	0	0	0	0	0	12593	841	29	4		4	PRICKLE2	3	64160780	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	463	64160780	133861650	129	91143											
UBA3	9039	broad.mit.edu	37	chr3	69127009	69127009	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcgctcgaggaacttcttTacatggttccagcgaccttc	9	12	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69127009	A	A	69127009	2	1	89	1	0	0	0	0	0	0	0	1	16955	1741	61	5		5	UBA3	3	69127009	Silent	SNP	T	TCGA-17-Z060-01A-01W-0747-08	4966229	69127009	128895421	130	91144											
SHQ1	55164	broad.mit.edu	37	chr3	72799282	72799282	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcaatatttttgatcTgcagttggttgaatccacag	7	7	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72799282	G	G	72799282	1	3	89	0	1	0	0	0	0	0	0	0	14405	1595	55	5		5	SHQ1	3	72799282	3'UTR	SNP	T	TCGA-17-Z060-01A-01W-0747-08	3672273	72799282	125223148	131	91145											
PDZRN3	23024	broad.mit.edu	37	chr3	73453569	73453569	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaaaaatatttagggtgGgacaaggttagaataaagca	13	2	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73453569	T	T	73453569	1	4	89	0	1	0	0	0	0	0	0	0	11803	1247	43	2		2	PDZRN3	3	73453569	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	654287	73453569	124568861	132	91146											
VGLL3	389136	broad.mit.edu	37	chr3	87017782	87017782	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactatgtctactgttccatGaaaggctccagcccatgctg	8	13	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87017782	T	T	87017782	3	4	89	1	0	0	0	0	1	0	0	0	17287	1290	45	3	93	3	VGLL3	3	87017782	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	13564213	87017782	111004648	133	91147											
GPR15	2838	broad.mit.edu	37	chr3	98251773	98251773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaacagctgtgtcaaccCtttcatttactatatcttcg	5	12	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98251773	A	A	98251773	3	1	89	1	0	0	0	0	1	0	0	0	6720	681	24	2	898	2	GPR15	3	98251773	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	11233991	98251773	99770657	134	91148											
TBC1D23	55773	broad.mit.edu	37	chr3	100025155	100025155	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacgtgcagaaagaaataCctgtgattatttccttcagt	8	8	1	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100025155	T	T	100025155	1	4	89	0	1	0	0	0	0	0	0	0	15732	522	18	4		4	TBC1D23	3	100025155	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1773382	100025155	97997275	135	91149											
SENP7	57337	broad.mit.edu	37	chr3	101049254	101049254	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttagaaataattaagcagtTatgagtgtttattgcatgtt	9	2	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101049254	A	A	101049254	1	1	89	0	1	0	0	0	0	0	0	0	14164	1769	61	5		5	SENP7	3	101049254	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	1024099	101049254	96973176	136	91150											
ZPLD1	131368	broad.mit.edu	37	chr3	102189358	102189358	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcggagtggtaagtgtgctCctccttctgtatgtagtaat	11	8	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102189358	T	T	102189358	1	4	89	0	1	0	0	0	0	0	0	0	18350	870	30	4		4	ZPLD1	3	102189358	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1140104	102189358	95833072	137	91151											
DZIP3	9666	broad.mit.edu	37	chr3	108355453	108355453	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttttatttttttctattaAtaaatttagagttttagtgg	5	1	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108355453	T	T	108355453	1	4	89	0	1	0	0	0	0	0	0	0	4905	116	4	5		5	DZIP3	3	108355453	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	6166095	108355453	89666977	138	91152											
ZBED2	79413	broad.mit.edu	37	chr3	111313116	111313116	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagcttatttgaaccacaaGattaaatatatatttgggaa	6	4	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111313116	T	T	111313116	1	4	89	0	1	0	0	0	0	0	0	0	17645	957	33	3		3	ZBED2	3	111313116	5'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2957663	111313116	86709314	139	91153											
ZNF80	7634	broad.mit.edu	37	chr3	113955745	113955745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaacaaggaggctgtttttGttaaacacgctcccacattc	8	11	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113955745	T	T	113955745	3	4	89	1	0	0	0	0	1	0	0	0	18297	1368	48	3	648	3	ZNF80	3	113955745	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2642629	113955745	84066685	140	91154											
PLA1A	51365	broad.mit.edu	37	chr3	119336746	119336746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaaaaagtgatttgagGggactcccatgcatgtattt	10	6	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119336746	T	T	119336746	1	4	89	0	1	0	0	0	0	0	0	0	12083	1247	43	2		2	PLA1A	3	119336746	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5381001	119336746	78685684	141	91155											
SEMA5B	54437	broad.mit.edu	37	chr3	122680072	122680072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcggcccagggacgagGtggtgggcaacaggagacgg	20	9	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122680072	T	T	122680072	3	4	89	1	0	0	0	0	1	0	0	0	14151	1252	44	3	3504	3	SEMA5B	3	122680072	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3343326	122680072	75342358	142	91156											
KALRN	8997	broad.mit.edu	37	chr3	123987728	123987728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagttcttcaacagcGccgtgcacctgctctcgcgc	12	14	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123987728	T	T	123987728	3	4	89	1	0	0	0	0	1	0	0	0	8045	1087	38	3	607	3	KALRN	3	123987728	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1307656	123987728	74034702	143	91157											
KALRN	8997	broad.mit.edu	37	chr3	124397099	124397099	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtggagaacacgggtaAaaatgaagccacagggcctc	14	8	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124397099	T	T	124397099	3	4	89	1	0	0	0	0	1	0	0	0	8045	14	1	5	7610	5	KALRN	3	124397099	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	409371	124397099	73625331	144	91158											
ALDH1L1	10840	broad.mit.edu	37	chr3	125824829	125824829	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggagagcctggcccactCcacaccccggcccactccac	9	20	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125824829	A	A	125824829	1	1	89	0	1	0	0	0	0	0	0	0	494	870	30	3		3	ALDH1L1	3	125824829	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1427730	125824829	72197601	145	91159											
EPHB1	2047	broad.mit.edu	37	chr3	134851646	134851647	+	Missense_Mutation	DNP	GG	TT	TT													tccaagggagacaggtgggcGggatgatgtgacctacaaca							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	134851647	TT	TT	134851646	3	4	89	1	0	0	0	0	1	0	0	0	5216	1116	39	1	1070	1	EPHB1	3	134851646	Missense_Mutation	DNP	GG	TCGA-17-Z060-01A-01W-0747-08	9026817	134851646	63170784	146	91160											
ATR	545	broad.mit.edu	37	chr3	142204090	142204090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttggcaaggtaaaaatgcCcatcctcccattctggcagg	9	12	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142204090	T	T	142204090	3	4	89	1	0	0	0	0	1	0	0	0	1208	623	22	4	1869	4	ATR	3	142204090	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	7352444	142204090	55818340	147	91161											
PCOLCE2	26577	broad.mit.edu	37	chr3	142539657	142539657	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccctgattttacttccctaGaccaaccatggcatggaaaa	7	12	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142539657	T	T	142539657	1	4	89	0	1	0	0	0	0	0	0	0	11689	957	33	3		3	PCOLCE2	3	142539657	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	335567	142539657	55482773	148	91162											
PLSCR5	389158	broad.mit.edu	37	chr3	146309466	146309466	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attatgttgcaaaaaaaaatCaggacctaaatgaaaacttc	5	6	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146309466	T	T	146309466	1	4	89	0	1	0	0	0	0	0	0	0	12208	841	29	4		4	PLSCR5	3	146309466	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3769809	146309466	51712964	149	91163											
PLD1	5337	broad.mit.edu	37	chr3	171330266	171330266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaaccttcctgttgtggCagacactgttggttgccctc	10	12	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171330266	A	A	171330266	1	1	89	0	1	0	0	0	0	0	0	0	12140	725	25	3		3	PLD1	3	171330266	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	25020800	171330266	26692164	150	91164											
MUC4	4585	broad.mit.edu	37	chr3	195516064	195516064	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtgcccgctgaggtggttCgtgaccctgaggaggccggt	17	11	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195516064	T	T	195516064	3	4	89	1	0	0	0	0	1	0	0	0	10072	884	31	4		4	MUC4	3	195516064	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	24185798	195516064	2506366	151	91165											
TNK2	10188	broad.mit.edu	37	chr3	195615192	195615192	+	Intron	SNP	G	C	C													gtccctcctgctccctcaggGctctgggacagagttctcag							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195615192	C	C	195615192	1	2	89	0	1	0	0	0	0	0	0	0	16441	1218	42	4		4	TNK2	3	195615192	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	99128	195615192	2407238	152	91166	409	2									
TNK2	10188	broad.mit.edu	37	chr3	195615199	195615199	+	Intron	SNP	G	A	A													ctgctccctcagggctctggGacagagttctcagctgccac							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195615199	A	A	195615199	1	1	89	0	1	0	0	0	0	0	0	0	16441	1189	41	4		4	TNK2	3	195615199	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7	195615199	2407231	153	91167	409	2									
ZNF595	152687	broad.mit.edu	37	chr4	59677	59677	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccttcactctaggatagTagtaattctagaaattcagt	7	7	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59677	C	C	59677	1	2	89	0	1	0	0	0	0	0	0	0	18152	1653	57	5		5	ZNF595	4	59677	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08		59677	191094599	154	91168											
WHSC1	7468	broad.mit.edu	37	chr4	1955058	1955058	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactttttgttagggattcaCtcatgtttcgtgtgtaaaga	9	5	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1955058	G	G	1955058	3	3	89	1	0	0	0	0	1	0	0	0	17489	564	20	4	2263	4	WHSC1	4	1955058	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1895381	1955058	189199218	155	91169											
OTOP1	133060	broad.mit.edu	37	chr4	4228436	4228436	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcggccagtttctgtgggacGctggcgcgcacaccgccccg	14	16	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4228436	C	C	4228436	3	2	89	1	0	0	0	0	1	0	0	0	11399	1078	38	4	1706	4	OTOP1	4	4228436	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2273378	4228436	186925840	156	91170											
FRYL	285527	broad.mit.edu	37	chr4	48537632	48537633	+	Intron	DEL	AT	-	-													acacacacacacacacacacAtatatatatagtaaataaga					rs78674320	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48537633	-	-	48537632	6	5	89	0	1	1	0	1	0	0	0	0	6124	232	8	0		0	FRYL	4	48537632	Intron	DEL	AT	TCGA-17-Z060-01A-01W-0747-08	44309196	48537632	142616644	157	91171											
CWH43	80157	broad.mit.edu	37	chr4	49046761	49046761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgtggaatagagctttGctttttatgctttaaacatt	8	5	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49046761	T	T	49046761	1	4	89	0	1	0	0	0	0	0	0	0	4106	1334	46	3		3	CWH43	4	49046761	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	509129	49046761	142107515	158	91172											
KIAA1211	57482	broad.mit.edu	37	chr4	57164495	57164495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcacaggacaacatcctgGgcaaagtcaaaactcttcag	8	11	4	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57164495	T	T	57164495	3	4	89	1	0	0	0	0	1	0	0	0	8285	1232	43	2	102	2	KIAA1211	4	57164495	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	8117734	57164495	133989781	159	91173											
EPHA5	2044	broad.mit.edu	37	chr4	66361398	66361398	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaatttcaagaagttttcaTaagcttctggatcataaata	5	6	5	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66361398	A	A	66361398	1	1	89	0	1	0	0	0	0	0	0	0	5212	1421	49	5		5	EPHA5	4	66361398	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	9196903	66361398	124792878	160	91174											
EPHA5	2044	broad.mit.edu	37	chr4	66439653	66439653	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctcactggacgccacagGggcaagagggtggttttcct	13	11	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66439653	A	A	66439653	1	1	89	0	1	0	0	0	0	0	0	0	5212	1247	43	4		4	EPHA5	4	66439653	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	78255	66439653	124714623	161	91175											
NPFFR2	10886	broad.mit.edu	37	chr4	73013616	73013616	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcacttcaaatttttcAaagaatgttctaaataaaac	3	7	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73013616	T	T	73013616	1	4	89	0	1	0	0	0	0	0	0	0	10673	145	5	5		5	NPFFR2	4	73013616	3'UTR	SNP	A	TCGA-17-Z060-01A-01W-0747-08	6573963	73013616	118140660	162	91176											
PPEF2	5470	broad.mit.edu	37	chr4	76808028	76808028	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaaatataaagattaagtCatccaattggccatgtaagt	6	5	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76808028	T	T	76808028	3	4	89	1	0	0	0	0	1	0	0	0	12404	826	29	4	1749	4	PPEF2	4	76808028	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3794412	76808028	114346248	163	91177											
NAAA	27163	broad.mit.edu	37	chr4	76851457	76851457	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggtgttcccctgagatcTggggaatggcagtggggatg	17	6	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76851457	C	C	76851457	1	2	89	0	1	0	0	0	0	0	0	0	10221	1595	55	5		5	NAAA	4	76851457	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	43429	76851457	114302819	164	91178											
PTPN13	5783	broad.mit.edu	37	chr4	87691257	87691257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcatggtacccccaggaaGtcatatctgctctcagggga	10	11	4	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87691257	T	T	87691257	3	4	89	1	0	0	0	0	1	0	0	0	12888	1029	36	3	4837	3	PTPN13	4	87691257	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	10839800	87691257	103463019	165	91179											
ABCG2	9429	broad.mit.edu	37	chr4	89042715	89042715	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgatcatttctgaaccccCtgccccaagaatatctggga	7	12	3	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89042715	G	G	89042715	1	3	89	0	1	0	0	0	0	0	0	0	69	696	24	4		4	ABCG2	4	89042715	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1351458	89042715	102111561	166	91180											
GRID2	2895	broad.mit.edu	37	chr4	94343889	94343889	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttagggagcactatagaTtgacatcagaaatttctctt	7	7	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94343889	C	C	94343889	1	2	89	0	1	0	0	0	0	0	0	0	6838	1508	52	5		5	GRID2	4	94343889	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	5301174	94343889	96810387	167	91181											
UNC5C	8633	broad.mit.edu	37	chr4	96181717	96181717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccacagaaaggattctgGggcagatgggctggtctaat	13	9	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96181717	A	A	96181717	1	1	89	0	1	0	0	0	0	0	0	0	17119	1247	43	4		4	UNC5C	4	96181717	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1837828	96181717	94972559	168	91182											
ANK2	287	broad.mit.edu	37	chr4	114274542	114274542	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagagaggattagttgaaGaggaatgggttattgtcagt	15	2	1	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114274542	T	T	114274542	4	4	89	1	0	0	0	0	0	1	0	0	621	943	33	3	4983	3	ANK2	4	114274542	Nonsense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	18092825	114274542	76879734	169	91183											
FAT4	79633	broad.mit.edu	37	chr4	126328353	126328353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcttttgaaccaaaattaCatactatgtttcggctgctc	6	10	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126328353	A	A	126328353	1	1	89	0	1	0	0	0	0	0	0	0	5749	493	17	3		3	FAT4	4	126328353	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	12053811	126328353	64825923	170	91184											
PET112L	5188	broad.mit.edu	37	chr4	152626296	152626297	+	Intron	INS	-	C	C													agcccagccctctcgcaccaINScccccggctgtggtcaggac							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152626297	C	C	152626296	6	5	89	0	1	1	1	0	0	0	0	0	11828	174	6	0		0	PET112L	4	152626296	Intron	INS	-	TCGA-17-Z060-01A-01W-0747-08	26297943	152626296	38527980	171	91185											
FGA	2243	broad.mit.edu	37	chr4	155507348	155507348	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgacacctcttcaaatgtGccccagtctgggttgttagg	10	12	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155507348	C	C	155507348	2	2	89	1	0	0	0	0	0	0	0	1	5887	1306	46	4		4	FGA	4	155507348	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2881052	155507348	35646928	172	91186											
TDO2	6999	broad.mit.edu	37	chr4	156828908	156828908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaagcaaatcctctgggaGttggattctgttcgagagat	11	6	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156828908	T	T	156828908	3	4	89	1	0	0	0	0	1	0	0	0	15849	1020	36	3	281	3	TDO2	4	156828908	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1321560	156828908	34325368	173	91187											
C4orf43	55319	broad.mit.edu	37	chr4	164438493	164438494	+	Intron	DNP	GG	TA	TA													tcgaaattttgttttctgttGgatattcttgctaaaaatta							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	164438494	TA	TA	164438493	1	4	89	0	1	0	0	0	0	0	0	0	2294	1363	47	2		2	C4orf43	4	164438493	Intron	DNP	GG	TCGA-17-Z060-01A-01W-0747-08	7609585	164438493	26715783	174	91188											
MFAP3L	9848	broad.mit.edu	37	chr4	170913311	170913311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgaccatgtagtagacacCcatgtctccagaagtgaaga	9	11	1	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170913311	A	A	170913311	3	1	89	1	0	0	0	0	1	0	0	0	9609	623	22	2	785	2	MFAP3L	4	170913311	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	6474818	170913311	20240965	175	91189											
GALNTL6	442117	broad.mit.edu	37	chr4	173150846	173150846	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatgggcaattctattcaTggacagatggtttgagaaga	13	4	2	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173150846	A	A	173150846	3	1	89	1	0	0	0	0	1	0	0	0	6287	1464	51	5	184	5	GALNTL6	4	173150846	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2237535	173150846	18003430	176	91190											
FAT1	2195	broad.mit.edu	37	chr4	187531125	187531125	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctactgttaggtaatactCatgagagctctcataatcca	6	10	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187531125	A	A	187531125	4	1	89	1	0	0	0	0	0	1	0	0	5746	835	29	3	3920	3	FAT1	4	187531125	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	14380279	187531125	3623151	177	91191											
ADCY2	108	broad.mit.edu	37	chr5	7626381	7626381	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacatatcaggacacctgTaattgcatcaagtcgcggat	8	10	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7626381	C	C	7626381	2	2	89	1	0	0	0	0	0	0	0	1	294	1644	57	5		5	ADCY2	5	7626381	Silent	SNP	T	TCGA-17-Z060-01A-01W-0747-08		7626381	173288879	178	91192											
ADCY2	108	broad.mit.edu	37	chr5	7766703	7766703	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cataaacaatcctgtttactGtgcataaggaacacagaatt	6	8	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7766703	C	C	7766703	1	2	89	0	1	0	0	0	0	0	0	0	294	1392	48	4		4	ADCY2	5	7766703	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	140322	7766703	173148557	179	91193											
SEMA5A	9037	broad.mit.edu	37	chr5	9054396	9054396	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaacacaatgtcacagctCttctataatccaatcccaac	3	13	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9054396	A	A	9054396	1	1	89	0	1	0	0	0	0	0	0	0	14150	928	32	3		3	SEMA5A	5	9054396	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1287693	9054396	171860864	180	91194											
BASP1	10409	broad.mit.edu	37	chr5	17275182	17275182	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttaactgtgcctaactaTagtttaccatgccacccctt	4	12	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17275182	G	G	17275182	1	3	89	0	1	0	0	0	0	0	0	0	1322	1421	49	5		5	BASP1	5	17275182	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	8220786	17275182	163640078	181	91195											
CDH12	1010	broad.mit.edu	37	chr5	21882692	21882692	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgccctgcagccgccccacAgaaatgcttcggttacccac	8	17	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21882692	T	T	21882692	1	4	89	0	1	0	0	0	0	0	0	0	3128	203	7	5		5	CDH12	5	21882692	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	4607510	21882692	159032568	182	91196											
CDH9	1007	broad.mit.edu	37	chr5	26886006	26886006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatgtaaaaaaacaaaaaCtttcatatttgtttttaact	2	5	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26886006	T	T	26886006	1	4	89	0	1	0	0	0	0	0	0	0	3147	580	20	4		4	CDH9	5	26886006	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5003314	26886006	154029254	183	91197											
CDH6	1004	broad.mit.edu	37	chr5	31267788	31267788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaggaatacacaggatccGattatcagtatgtgggcaag	13	6	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31267788	T	T	31267788	3	4	89	1	0	0	0	0	1	0	0	0	3144	1058	37	3	210	3	CDH6	5	31267788	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4381782	31267788	149647472	184	91198											
C5orf42	65250	broad.mit.edu	37	chr5	37183248	37183248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattgacctttgttttaaacCaaataatccactcattcctt	2	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37183248	T	T	37183248	3	4	89	1	0	0	0	0	1	0	0	0	2324	594	21	4	4666	4	C5orf42	5	37183248	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5915460	37183248	143732012	185	91199											
C6	729	broad.mit.edu	37	chr5	41149895	41149895	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaatggggaaggaggaattCagcagagcacaggaatatca	13	7	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41149895	A	A	41149895	1	1	89	0	1	0	0	0	0	0	0	0	2338	841	29	3		3	C6	5	41149895	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3966647	41149895	139765365	186	91200											
NNT	23530	broad.mit.edu	37	chr5	43700482	43700482	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtagataataagttgaaaTtaaataagtgaaatatagta	8	0	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43700482	G	G	43700482	1	3	89	0	1	0	0	0	0	0	0	0	10605	1508	52	5		5	NNT	5	43700482	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2550587	43700482	137214778	187	91201											
ANKRD55	79722	broad.mit.edu	37	chr5	55466377	55466377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctagaatattttgttgtGgtcctatctgctgcaacttc	7	8	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55466377	T	T	55466377	1	4	89	0	1	0	0	0	0	0	0	0	681	1363	47	2		2	ANKRD55	5	55466377	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	11765895	55466377	125448883	188	91202											
FAM169A	26049	broad.mit.edu	37	chr5	74095669	74095669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcctgacctttgtctcCaagttagacattccaaaaca	7	12	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74095669	A	A	74095669	1	1	89	0	1	0	0	0	0	0	0	0	5532	609	21	2		2	FAM169A	5	74095669	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	18629292	74095669	106819591	189	91203											
DMGDH	29958	broad.mit.edu	37	chr5	78359439	78359439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtgcttttcttactgcGtgccaggtagatccagccgt	13	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78359439	T	T	78359439	3	4	89	1	0	0	0	0	1	0	0	0	4621	1136	40	3	2387	3	DMGDH	5	78359439	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4263770	78359439	102555821	190	91204											
CEP120	153241	broad.mit.edu	37	chr5	122751835	122751835	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagcctataacaaaacatgtGataaataaaatggtttttgc	6	5	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122751835	A	A	122751835	1	1	89	0	1	0	0	0	0	0	0	0	3276	1305	45	4		4	CEP120	5	122751835	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	44392396	122751835	58163425	191	91205											
RAD50	10111	broad.mit.edu	37	chr5	131911645	131911645	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttatatgatatttgaaTttctgttcattttcagtctt	6	4	4	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131911645	A	A	131911645	1	1	89	0	1	0	0	0	0	0	0	0	13092	1508	52	5		5	RAD50	5	131911645	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	9159810	131911645	49003615	192	91206											
PCDHA7	56141	broad.mit.edu	37	chr5	140216005	140216005	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggcaccaaaggcgtcGtcgcgggcatcgttgggcat	16	12	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140216005	A	A	140216005	2	1	89	1	0	0	0	0	0	0	0	1	11623	1132	40	4		4	PCDHA7	5	140216005	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	8304360	140216005	40699255	193	91207											
PCDHB5	26167	broad.mit.edu	37	chr5	140516399	140516399	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaccctgttcgtccgagaGaacaacagccccgccctgca	8	17	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140516399	T	T	140516399	3	4	89	1	0	0	0	0	1	0	0	0	11639	933	33	3	1385	3	PCDHB5	5	140516399	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	300394	140516399	40398861	194	91208											
PCDHB9	56127	broad.mit.edu	37	chr5	140568343	140568343	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagactcaggcaccaacgcCcaggtcacctactcgctgct	9	16	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140568343	A	A	140568343	2	1	89	1	0	0	0	0	0	0	0	1	11643	623	22	2		2	PCDHB9	5	140568343	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	51944	140568343	40346917	195	91209											
PCDHB12	56124	broad.mit.edu	37	chr5	140589765	140589765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcaccgacttggggacccCcaggctaaaaaccgagcaca	10	15	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140589765	A	A	140589765	3	1	89	1	0	0	0	0	1	0	0	0	11631	623	22	2	1288	2	PCDHB12	5	140589765	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	21422	140589765	40325495	196	91210											
PCDHGA3	56112	broad.mit.edu	37	chr5	140724231	140724231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaattcaccagcttGtcctggttgcctctgatggt	9	9	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140724231	T	T	140724231	3	4	89	1	0	0	0	0	1	0	0	0	11649	1377	48	3	633	3	PCDHGA3	5	140724231	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	134466	140724231	40191029	197	91211											
PCDHGA6	56109	broad.mit.edu	37	chr5	140756102	140756102	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttccgcctaagcgggaaGagtaatctgatcttcccgca	9	12	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140756102	A	A	140756102	1	1	89	0	1	0	0	0	0	0	0	0	11652	943	33	4		4	PCDHGA6	5	140756102	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	31871	140756102	40159158	198	91212											
KIF4B	285643	broad.mit.edu	37	chr5	154396718	154396718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggaacaagcagtgtgGgtgcaggaagcaaaagtcag	17	5	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154396718	A	A	154396718	3	1	89	1	0	0	0	0	1	0	0	0	8374	1232	43	4	3301	4	KIF4B	5	154396718	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	13640616	154396718	26518542	199	91213											
DOCK2	1794	broad.mit.edu	37	chr5	169143299	169143299	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgacatcctcgtctttgAtgccttggtaagagagaggg	12	7	1	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169143299	G	G	169143299	3	3	89	1	0	0	0	0	1	0	0	0	4727	333	12	5	2102	5	DOCK2	5	169143299	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	14746581	169143299	11771961	200	91214											
DOCK2	1794	broad.mit.edu	37	chr5	169502911	169502911	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccaggctgaggcccacCggtcagcctctggctcattc	13	15	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169502911	G	G	169502911	1	3	89	0	1	0	0	0	0	0	0	0	4727	667	23	4		4	DOCK2	5	169502911	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	359612	169502911	11412349	201	91215											
LCP2	3937	broad.mit.edu	37	chr5	169684972	169684972	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctttctcaatctgcctGgcattacttcagtactggat	6	12	4	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169684972	A	A	169684972	1	1	89	0	1	0	0	0	0	0	0	0	8764	1363	47	4		4	LCP2	5	169684972	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	182061	169684972	11230288	202	91216											
GRM6	2916	broad.mit.edu	37	chr5	178414064	178414064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggccccagggaccagcaGgagaaaggaggagcttaaca	16	9	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178414064	T	T	178414064	1	4	89	0	1	0	0	0	0	0	0	0	6867	1015	35	2		2	GRM6	5	178414064	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	8729092	178414064	2501196	203	91217											
ZNF354C	30832	broad.mit.edu	37	chr5	178503473	178503473	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacattcagggatgtggccGtgttcttcagccaggacgag	14	9	3	1	rs138654012		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178503473	C	C	178503473	3	2	89	1	0	0	0	0	1	0	0	0	17992	1145	40	4	61	4	ZNF354C	5	178503473	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	89409	178503473	2411787	204	91218											
ADAMTS2	9509	broad.mit.edu	37	chr5	178771087	178771087	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagctgccgacaccacgtggGacaccaagcggccctgggcg	14	15	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178771087	A	A	178771087	3	1	89	1	0	0	0	0	1	0	0	0	265	1174	41	4	3579	4	ADAMTS2	5	178771087	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	267614	178771087	2144173	205	91219											
C6orf201	404220	broad.mit.edu	37	chr6	4087866	4087866	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccagaagttttgtgtcgCccctttgagatgctgtctaa	10	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4087866	A	A	4087866	1	1	89	0	1	0	0	0	0	0	0	0	2374	754	26	3		3	C6orf201	6	4087866	5'UTR	SNP	C	TCGA-17-Z060-01A-01W-0747-08		4087866	167027201	206	91220											
NRN1	51299	broad.mit.edu	37	chr6	5999207	5999207	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggggggagctggccccacGctcagaaggaaagccaggtc	17	12	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5999207	C	C	5999207	1	2	89	0	1	0	0	0	0	0	0	0	10753	1102	38	4		4	NRN1	6	5999207	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1911341	5999207	165115860	207	91221											
KAAG1	353219	broad.mit.edu	37	chr6	24358006	24358006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggccgccgcctcagctcGctgcttcgcgtcgggaggca	15	16	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24358006	T	T	24358006	3	4	89	1	0	0	0	0	1	0	0	0	8043	1087	38	3	141	3	KAAG1	6	24358006	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	18358799	24358006	146757061	208	91222											
HIST1H2AG	8969	broad.mit.edu	37	chr6	27100668	27100668	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattggtagttattcagggTaacgtcagaggtcaggtctg	14	5	4	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27100668	C	C	27100668	1	2	89	0	1	0	0	0	0	0	0	0	7200	1653	57	5		5	HIST1H2AG	6	27100668	5'Flank	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2742662	27100668	144014399	209	91223											
CFB	629	broad.mit.edu	37	chr6	31916807	31916807	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatgtggcccttaagtccActtgtaacactatacccatg	7	12	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31916807	G	G	31916807	1	3	89	0	1	0	0	0	0	0	0	0	3308	174	6	5		5	CFB	6	31916807	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	4816139	31916807	139198260	210	91224											
GRM4	2914	broad.mit.edu	37	chr6	34008347	34008347	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagttgacgtttcggatGtacttaagcagctgggtgcc	14	7	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34008347	T	T	34008347	4	4	89	1	0	0	0	0	0	1	0	0	6865	1372	48	3	1411	3	GRM4	6	34008347	Nonsense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2091540	34008347	137106720	211	91225											
GPR111	222611	broad.mit.edu	37	chr6	47645713	47645713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttctgtcctgtggcatgGcagatggaatccttgatgac	12	10	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47645713	T	T	47645713	1	4	89	0	1	0	0	0	0	0	0	0	6693	1218	42	3		3	GPR111	6	47645713	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	13637366	47645713	123469354	212	91226											
FAM83B	222584	broad.mit.edu	37	chr6	54805296	54805296	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcattcagaagctacaccGgactcaaatggatcagcttt	8	10	4	1	rs149380682		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54805296	T	T	54805296	2	4	89	1	0	0	0	0	0	0	0	1	5687	1103	39	1		1	FAM83B	6	54805296	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7159583	54805296	116309771	213	91227											
BEND6	221336	broad.mit.edu	37	chr6	56869441	56869441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctacgtgggctgaatgCaatggagtgggcattacatt	12	9	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56869441	A	A	56869441	1	1	89	0	1	0	0	0	0	0	0	0	1407	725	25	3		3	BEND6	6	56869441	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2064145	56869441	114245626	214	91228											
BAI3	577	broad.mit.edu	37	chr6	69943498	69943498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattctataactaaattctaCtcaattttatgtcttctaac	1	8	5	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69943498	A	A	69943498	1	1	89	0	1	0	0	0	0	0	0	0	1305	580	20	3		3	BAI3	6	69943498	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	13074057	69943498	101171569	215	91229											
MYO6	4646	broad.mit.edu	37	chr6	76599714	76599714	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtattgttaagtatattcAcattgttgtgcaacagaaga	8	5	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76599714	C	C	76599714	1	2	89	0	1	0	0	0	0	0	0	0	10175	174	6	5		5	MYO6	6	76599714	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	6656216	76599714	94515353	216	91230											
TBX18	9096	broad.mit.edu	37	chr6	85448069	85448069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgatccatccccatacCatgcagaagacagatggaat	7	12	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85448069	A	A	85448069	1	1	89	0	1	0	0	0	0	0	0	0	15775	609	21	2		2	TBX18	6	85448069	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	8848355	85448069	85666998	217	91231											
BCLAF1	9774	broad.mit.edu	37	chr6	136597524	136597524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcactgaagtaatctagaGcttcctgatcttcccattct	5	11	4	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136597524	T	T	136597524	3	4	89	1	0	0	0	0	1	0	0	0	1388	971	34	3	1659	3	BCLAF1	6	136597524	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	51149455	136597524	34517543	218	91232											
SHPRH	257218	broad.mit.edu	37	chr6	146234621	146234621	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcataattttacctgttttCctagctgtcgagcacagatt	6	9	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146234621	T	T	146234621	3	4	89	1	0	0	0	0	1	0	0	0	14404	855	30	4	777	4	SHPRH	6	146234621	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9637097	146234621	24880446	219	91233											
SYNE1	23345	broad.mit.edu	37	chr6	152683397	152683397	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccatactatccatccaacCggagaactgtcgaacgccat	6	14	0	1	rs116758271	byFrequency;by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152683397	G	G	152683397	3	3	89	1	0	0	0	0	1	0	0	0	15564	652	23	4	16591	4	SYNE1	6	152683397	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	6448776	152683397	18431670	220	91234											
RGS17	26575	broad.mit.edu	37	chr6	153345676	153345676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaagggaactttgtgacCagtgaatgctagaccaggta	11	7	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153345676	A	A	153345676	1	1	89	0	1	0	0	0	0	0	0	0	13408	609	21	2		2	RGS17	6	153345676	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	662279	153345676	17769391	221	91235											
SYNJ2	8871	broad.mit.edu	37	chr6	158504309	158504309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtatgagagctatgctgaGcctgcgtgaggtctggaccc	14	9	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158504309	T	T	158504309	1	4	89	0	1	0	0	0	0	0	0	0	15572	986	34	3		3	SYNJ2	6	158504309	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5158633	158504309	12610758	222	91236											
TULP4	56995	broad.mit.edu	37	chr6	158910480	158910480	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaagagaaaaacaatgccAagcttctttttggtttcaac	6	7	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158910480	C	C	158910480	1	2	89	0	1	0	0	0	0	0	0	0	16902	145	5	5		5	TULP4	6	158910480	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	406171	158910480	12204587	223	91237											
FNDC1	84624	broad.mit.edu	37	chr6	159653930	159653930	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggtgacggcgatagggaaGacggcggaaggcaggcggag	21	7	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159653930	T	T	159653930	3	4	89	1	0	0	0	0	1	0	0	0	6026	942	33	3	2428	3	FNDC1	6	159653930	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	743450	159653930	11461137	224	91238											
LPA	4018	broad.mit.edu	37	chr6	161071259	161071259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcagacattttgccatgCattctatgtgtgagaaaaat	7	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161071259	A	A	161071259	1	1	89	0	1	0	0	0	0	0	0	0	8990	725	25	3		3	LPA	6	161071259	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1417329	161071259	10043808	225	91239											
C6orf118	168090	broad.mit.edu	37	chr6	165711608	165711608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctaggcaggaccaggtaCatgaggtgagacaagcacac	13	10	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165711608	A	A	165711608	1	1	89	0	1	0	0	0	0	0	0	0	2346	493	17	3		3	C6orf118	6	165711608	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4640349	165711608	5403459	226	91240											
FAM120B	84498	broad.mit.edu	37	chr6	170627007	170627007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataactgtcttgggattctgGgggaagacactgattaccta	11	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170627007	T	T	170627007	3	4	89	1	0	0	0	0	1	0	0	0	5463	1232	43	2	531	2	FAM120B	6	170627007	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4915399	170627007	488060	227	91241											
CARD11	84433	broad.mit.edu	37	chr7	2954996	2954996	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttatacttgttctcggacCtgctgacgaactggaggaga	12	9	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2954996	G	G	2954996	3	3	89	1	0	0	0	0	1	0	0	0	2671	681	24	4	770	4	CARD11	7	2954996	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08		2954996	156183667	228	91242											
RADIL	55698	broad.mit.edu	37	chr7	4917468	4917468	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcctgcctggggtccagGgcgtaccgctccagcgcctc	14	18	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4917468	A	A	4917468	2	1	89	1	0	0	0	0	0	0	0	1	13105	1219	43	4		4	RADIL	7	4917468	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1962472	4917468	154221195	229	91243											
FERD3L	222894	broad.mit.edu	37	chr7	19185001	19185001	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcgcttcggcttggccCtgcctctcatcggttttccg	10	16	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19185001	A	A	19185001	1	1	89	1	0	0	0	0	0	0	0	0	5873	696	24	2		2	FERD3L	7	19185001	Translation_Start_Site	SNP	C	TCGA-17-Z060-01A-01W-0747-08	14267533	19185001	139953662	230	91244											
ABCB5	340273	broad.mit.edu	37	chr7	20666292	20666292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttagagacttgtcagtaGtgcatagaagattgtgttta	10	3	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20666292	T	T	20666292	1	4	89	0	1	0	0	0	0	0	0	0	44	1044	36	3		3	ABCB5	7	20666292	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1481291	20666292	138472371	231	91245											
IGF2BP3	10643	broad.mit.edu	37	chr7	23383342	23383342	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cataacaaaactaacattcaTagaagcaatatcattttcat	2	8	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23383342	G	G	23383342	3	3	89	1	0	0	0	0	1	0	0	0	7645	1406	49	5	695	5	IGF2BP3	7	23383342	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2717050	23383342	135755321	232	91246											
IGF2BP3	10643	broad.mit.edu	37	chr7	23385654	23385654	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaaagttattatgagcTaaaatcttcaaggggatctc	7	8	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23385654	A	A	23385654	3	1	89	1	0	0	0	0	1	0	0	0	7645	1519	53	5	925	5	IGF2BP3	7	23385654	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2312	23385654	135753009	233	91247											
STK31	56164	broad.mit.edu	37	chr7	23826248	23826248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgatattcctgtttttatGtaaggtaaagttcttatgct	7	4	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23826248	T	T	23826248	3	4	89	1	0	0	0	0	1	0	0	0	15414	1377	48	3	2470	3	STK31	7	23826248	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	440594	23826248	135312415	234	91248											
CREB5	9586	broad.mit.edu	37	chr7	28858964	28858964	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtcctttcttttaagggcaTttttagaattaactcagacc	6	9	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28858964	A	A	28858964	1	1	89	0	1	0	0	0	0	0	0	0	3892	1508	52	5		5	CREB5	7	28858964	3'UTR	SNP	T	TCGA-17-Z060-01A-01W-0747-08	5032716	28858964	130279699	235	91249											
AMPH	273	broad.mit.edu	37	chr7	38471612	38471612	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtactcttccttcaccatCatcttccggttctgataatg	5	13	5	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38471612	T	T	38471612	1	4	89	0	1	0	0	0	0	0	0	0	588	841	29	4		4	AMPH	7	38471612	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9612648	38471612	120667051	236	91250											
CAMK2B	816	broad.mit.edu	37	chr7	44286856	44286856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagaggaggcactgggGgcaggggcaatggtgctgtg	20	7	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44286856	T	T	44286856	1	4	89	0	1	0	0	0	0	0	0	0	2626	1247	43	2		2	CAMK2B	7	44286856	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5815244	44286856	114851807	237	91251											
ZNF735	730291	broad.mit.edu	37	chr7	63674406	63674406	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaggtatgactgtctctaAgccagacttgatcgcctgtc	9	11	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63674406	T	T	63674406	3	4	89	1	0	0	0	0	1	0	0	0	18253	72	3	5	192	5	ZNF735	7	63674406	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	19387550	63674406	95464257	238	91252											
SBDS	51119	broad.mit.edu	37	chr7	66456124	66456124	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaaatatttgactcttacGatttctaactgttggccata	6	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66456124	A	A	66456124	2	1	89	1	0	0	0	0	0	0	0	1	13969	1072	37	4		4	SBDS	7	66456124	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2781718	66456124	92682539	239	91253											
ABCB1	5243	broad.mit.edu	37	chr7	87195567	87195567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagacatcactgaaagaaCagatagtgttagaaataatt	9	4	1	5			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87195567	A	A	87195567	1	1	89	0	1	0	0	0	0	0	0	0	40	493	17	3		3	ABCB1	7	87195567	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	20739443	87195567	71943096	240	91254											
TAC1	6863	broad.mit.edu	37	chr7	97363555	97363555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgacaattcgtctcttGtcagattcctcaattgaaaa	5	8	3	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97363555	T	T	97363555	1	4	89	0	1	0	0	0	0	0	0	0	15617	1392	48	3		3	TAC1	7	97363555	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	10167988	97363555	61775108	241	91255											
TMEM130	222865	broad.mit.edu	37	chr7	98452829	98452829	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggatgtgcagagcccacGgggcacccccagtgcgctct	16	14	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98452829	C	C	98452829	1	2	89	0	1	0	0	0	0	0	0	0	16166	1131	39	4		4	TMEM130	7	98452829	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1089274	98452829	60685834	242	91256											
CYP3A43	64816	broad.mit.edu	37	chr7	99436638	99436638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccagtaaatggtagcaaGcctaatggtagcaagtcatt	10	8	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99436638	T	T	99436638	1	4	89	0	1	0	0	0	0	0	0	0	4212	986	34	3		3	CYP3A43	7	99436638	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	983809	99436638	59702025	243	91257											
SPDYE3	441272	broad.mit.edu	37	chr7	99917154	99917154	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggaggtctctcctggtggTgcccctgagcagcaacctga	13	14	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99917154	A	A	99917154	1	1	89	0	1	0	0	0	0	0	0	0	15148	1711	59	5		5	SPDYE3	7	99917154	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	480516	99917154	59221509	244	91258											
PRKRIP1	79706	broad.mit.edu	37	chr7	102065387	102065387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacttttgacttcccatcaGctctcctctttgaaagcacc	6	14	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102065387	T	T	102065387	1	4	89	0	1	0	0	0	0	0	0	0	12631	986	34	3		3	PRKRIP1	7	102065387	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2148233	102065387	57073276	245	91259											
PIK3CG	5294	broad.mit.edu	37	chr7	106509746	106509746	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctctggcattttagataCgaaagccttaagcacccaaa	7	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106509746	A	A	106509746	4	1	89	1	0	0	0	0	0	1	0	0	12011	547	19	3	1742	3	PIK3CG	7	106509746	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4444359	106509746	52628917	246	91260											
PIK3CG	5294	broad.mit.edu	37	chr7	106521446	106521446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccaacagtgtggacctGgaaaatagctctctggtcaa	9	9	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106521446	T	T	106521446	1	4	89	0	1	0	0	0	0	0	0	0	12011	1363	47	2		2	PIK3CG	7	106521446	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	11700	106521446	52617217	247	91261											
C7orf58	79974	broad.mit.edu	37	chr7	120782291	120782291	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattattacaagaaattgtaTgccttgaaatcgaaactgtg	7	5	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120782291	A	A	120782291	1	1	89	0	1	0	0	0	0	0	0	0	2430	1479	51	5		5	C7orf58	7	120782291	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	14260845	120782291	38356372	248	91262											
RBM28	55131	broad.mit.edu	37	chr7	127977073	127977073	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctggaattacaggcaagaGccactgcacccagccttttt	9	12	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127977073	C	C	127977073	1	2	89	0	1	0	0	0	0	0	0	0	13236	986	34	4		4	RBM28	7	127977073	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7194782	127977073	31161590	249	91263											
FLNC	2318	broad.mit.edu	37	chr7	128489100	128489100	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcaaagcccctccagaacCctggcctggtccccaggggt	10	18	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128489100	T	T	128489100	1	4	89	0	1	0	0	0	0	0	0	0	5993	638	22	4		4	FLNC	7	128489100	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	512027	128489100	30649563	250	91264											
CPA5	93979	broad.mit.edu	37	chr7	130001127	130001127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagactctaccttgaggGcctctggcataagattgatc	10	10	2	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130001127	T	T	130001127	1	4	89	0	1	0	0	0	0	0	0	0	3825	1218	42	3		3	CPA5	7	130001127	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1512027	130001127	29137536	251	91265											
KLRG2	346689	broad.mit.edu	37	chr7	139164445	139164445	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctggcttcccaggcctgCgcttctgcagagaagtagta	13	11	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139164445	G	G	139164445	2	3	89	1	0	0	0	0	0	0	0	1	8493	755	27	4		4	KLRG2	7	139164445	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9163318	139164445	19974218	252	91266											
MGAM	8972	broad.mit.edu	37	chr7	141747582	141747582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgaatcttgttccccaCagtcgaaagaaccctcttgg	8	12	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141747582	A	A	141747582	1	1	89	0	1	0	0	0	0	0	0	0	9634	493	17	3		3	MGAM	7	141747582	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2583137	141747582	17391081	253	91267											
KCNH2	3757	broad.mit.edu	37	chr7	150648009	150648009	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgctctggtggcctcacCgcgttcatgtcgatgccgtt	11	15	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150648009	A	A	150648009	2	1	89	1	0	0	0	0	0	0	0	1	8102	666	23	1		1	KCNH2	7	150648009	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	8900427	150648009	8490654	254	91268											
NOM1	64434	broad.mit.edu	37	chr7	156756633	156756633	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctagaactcgcccggaagcAgaggatgaacacagacatcc	10	13	0	4	rs114916388	byFrequency;by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156756633	G	G	156756633	3	3	89	1	0	0	0	0	1	0	0	0	10625	188	7	5	1972	5	NOM1	7	156756633	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	6108624	156756633	2382030	255	91269											
NCAPG2	54892	broad.mit.edu	37	chr7	158443760	158443760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtattcttactatcctcCcccaggactcaaggagtcac	6	13	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158443760	A	A	158443760	1	1	89	0	1	0	0	0	0	0	0	0	10303	638	22	2		2	NCAPG2	7	158443760	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1687127	158443760	694903	256	91270											
MYOM2	9172	broad.mit.edu	37	chr8	2071615	2071616	+	Intron	DEL	CA	-	-													atgtctagcctcagctatagCacacattgtgtctttagcag							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2071616	-	-	2071615	6	5	89	0	1	1	0	1	0	0	0	0	10186	725	25	0		0	MYOM2	8	2071615	Intron	DEL	CA	TCGA-17-Z060-01A-01W-0747-08		2071615	144292407	257	91271											
CSMD1	64478	broad.mit.edu	37	chr8	2855829	2855830	+	Intron	DNP	GG	TT	TT													tgaaggttttccactaaccaGgcagcttacagatggtattt							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2855830	TT	TT	2855829	1	4	89	0	1	0	0	0	0	0	0	0	3978	1015	35	2		2	CSMD1	8	2855829	Intron	DNP	GG	TCGA-17-Z060-01A-01W-0747-08	784214	2855829	143508193	258	91272											
RP1L1	94137	broad.mit.edu	37	chr8	10467776	10467776	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctgctcctcactgtctcTttctgcttcatcctcattgg	5	16	6	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10467776	C	C	10467776	3	2	89	1	0	0	0	0	1	0	0	0	13644	1617	56	5	3374	5	RP1L1	8	10467776	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	7611947	10467776	135896246	259	91273											
RP1L1	94137	broad.mit.edu	37	chr8	10469612	10469612	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcggtagtgagaatgccTgggatggcctctcggggcca	16	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10469612	A	A	10469612	3	1	89	1	0	0	0	0	1	0	0	0	13644	1579	55	5	5210	5	RP1L1	8	10469612	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	1836	10469612	135894410	260	91274											
PIWIL2	55124	broad.mit.edu	37	chr8	22140496	22140496	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggaataatctggatgGgacatagctattataaaaaa	11	3	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22140496	A	A	22140496	1	1	89	0	1	0	0	0	0	0	0	0	12053	1247	43	4		4	PIWIL2	8	22140496	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	11670884	22140496	124223526	261	91275											
PTK2B	2185	broad.mit.edu	37	chr8	27296831	27296831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcccacccaaagcctctGtgactcgtctccccatcaaa	5	17	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27296831	T	T	27296831	3	4	89	1	0	0	0	0	1	0	0	0	12869	1377	48	3	1824	3	PTK2B	8	27296831	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5156335	27296831	119067191	262	91276											
TEX15	56154	broad.mit.edu	37	chr8	30700236	30700236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggcactgaaccagctcagGaagaagtgacaaatcaaacc	9	10	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30700236	T	T	30700236	3	4	89	1	0	0	0	0	1	0	0	0	15901	1174	41	3	2087	3	TEX15	8	30700236	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3403405	30700236	115663786	263	91277											
PURG	29942	broad.mit.edu	37	chr8	30889476	30889476	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attagagcccacatcaaagtAgaaccttttattgtccactc	5	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30889476	G	G	30889476	3	3	89	1	0	0	0	0	1	0	0	0	12937	420	15	5	333	5	PURG	8	30889476	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	189240	30889476	115474546	264	91278											
KCNU1	157855	broad.mit.edu	37	chr8	36691048	36691048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatcttttttccctcattGctgccacgttcttttttgtc	4	12	4	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36691048	T	T	36691048	1	4	89	0	1	0	0	0	0	0	0	0	8163	1334	46	3		3	KCNU1	8	36691048	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5801572	36691048	109672974	265	91279											
EFCAB1	79645	broad.mit.edu	37	chr8	49637302	49637302	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatatagacatttagttattCacatatcattgaattcattt	3	5	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49637302	T	T	49637302	2	4	89	1	0	0	0	0	0	0	0	1	4973	837	29	4		4	EFCAB1	8	49637302	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	12946254	49637302	96726720	266	91280											
PXDNL	137902	broad.mit.edu	37	chr8	52387683	52387683	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcacagtcacaaaccagGgcgttggaatccagacgcct	10	12	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52387683	A	A	52387683	2	1	89	1	0	0	0	0	0	0	0	1	12956	1219	43	4		4	PXDNL	8	52387683	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2750381	52387683	93976339	267	91281											
PENK	5179	broad.mit.edu	37	chr8	57358315	57358315	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggccggaggcagtccgcGtactgttgcggaaactctgt	16	10	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57358315	A	A	57358315	1	1	89	0	1	0	0	0	0	0	0	0	11821	1160	40	4		4	PENK	8	57358315	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4970632	57358315	89005707	268	91282											
NKAIN3	286183	broad.mit.edu	37	chr8	63768436	63768436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctgtggcaccaaagCcacaaaataaagagagatgt	8	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63768436	A	A	63768436	1	1	89	0	1	0	0	0	0	0	0	0	10532	754	26	3		3	NKAIN3	8	63768436	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	6410121	63768436	82595586	269	91283											
HNF4G	3174	broad.mit.edu	37	chr8	76476421	76476421	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacttttggcaaactcttaGccaaggcttcttcattggtg	9	10	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76476421	A	A	76476421	1	1	89	0	1	0	0	0	0	0	0	0	7321	986	34	4		4	HNF4G	8	76476421	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	12707985	76476421	69887601	270	91284											
LRRCC1	85444	broad.mit.edu	37	chr8	86043979	86043979	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcatccttttatctttatAtgtttttcactccaggaagg	5	8	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86043979	T	T	86043979	1	4	89	0	1	0	0	0	0	0	0	0	9113	464	16	5		5	LRRCC1	8	86043979	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	9567558	86043979	60320043	271	91285											
PSKH2	85481	broad.mit.edu	37	chr8	87076698	87076698	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctggacaatgtaacgatgGctaacccgccgcaggacgct	12	12	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87076698	C	C	87076698	3	2	89	1	0	0	0	0	1	0	0	0	12771	1194	42	4	815	4	PSKH2	8	87076698	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1032719	87076698	59287324	272	91286											
MMP16	4325	broad.mit.edu	37	chr8	89054067	89054067	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaggtaccacttatttgtGacagtgtatatgtagagaaa	9	6	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89054067	A	A	89054067	1	1	89	0	1	0	0	0	0	0	0	0	9748	1305	45	4		4	MMP16	8	89054067	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1977369	89054067	57309955	273	91287											
SLC26A7	115111	broad.mit.edu	37	chr8	92406445	92406445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttccattctttttttaGgccagttataaactgttgtt	6	6	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92406445	T	T	92406445	1	4	89	0	1	0	0	0	0	0	0	0	14636	1014	35	2		2	SLC26A7	8	92406445	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3352378	92406445	53957577	274	91288											
KIAA1429	25962	broad.mit.edu	37	chr8	95543256	95543256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctggaggagttcttggtCcccttggctgtggtcttgga	15	9	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95543256	A	A	95543256	3	1	89	1	0	0	0	0	1	0	0	0	8301	855	30	3	5026	3	KIAA1429	8	95543256	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3136811	95543256	50820766	275	91289											
OXR1	55074	broad.mit.edu	37	chr8	107709650	107709650	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggcaaggcctggggtggGatcaaaggatctggtgtggc	20	6	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107709650	T	T	107709650	1	4	89	0	1	0	0	0	0	0	0	0	11428	1189	41	3		3	OXR1	8	107709650	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	12166394	107709650	38654372	276	91290											
PKHD1L1	93035	broad.mit.edu	37	chr8	110456199	110456199	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtattttgacgataacCttgttatttaatttttacca	4	5	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110456199	T	T	110456199	1	4	89	0	1	0	0	0	0	0	0	0	12067	696	24	4		4	PKHD1L1	8	110456199	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2746549	110456199	35907823	277	91291											
PKHD1L1	93035	broad.mit.edu	37	chr8	110473980	110473980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgacaatttttttaatgatGctttaaaaactgttttgaag	6	5	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110473980	T	T	110473980	1	4	89	0	1	0	0	0	0	0	0	0	12067	1334	46	3		3	PKHD1L1	8	110473980	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	17781	110473980	35890042	278	91292											
CSMD3	114788	broad.mit.edu	37	chr8	113516138	113516138	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtcttgaaaacttccaAtcagtgggctattactgtct	8	9	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113516138	G	G	113516138	3	3	89	1	0	0	0	0	1	0	0	0	3980	101	4	5	6327	5	CSMD3	8	113516138	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	3042158	113516138	32847884	279	91293											
CSMD3	114788	broad.mit.edu	37	chr8	114389230	114389230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccagccgggcccgcagCcacatcttctagggagtggg	14	13	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114389230	A	A	114389230	1	1	89	0	1	0	0	0	0	0	0	0	3980	754	26	3		3	CSMD3	8	114389230	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	873092	114389230	31974792	280	91294											
FER1L6	654463	broad.mit.edu	37	chr8	125022813	125022813	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgattaccagctaacttcCagacctaattgttttcacag	5	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125022813	G	G	125022813	1	3	89	0	1	0	0	0	0	0	0	0	5872	609	21	4		4	FER1L6	8	125022813	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	10633583	125022813	21341209	281	91295											
TOP1MT	116447	broad.mit.edu	37	chr8	144444959	144444959	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttaagccctggtccagcCcagccttcggtcttctgagc	9	16	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144444959	A	A	144444959	1	1	89	0	1	0	0	0	0	0	0	0	16488	638	22	2		2	TOP1MT	8	144444959	5'Flank	SNP	C	TCGA-17-Z060-01A-01W-0747-08	19422146	144444959	1919063	282	91296											
DOCK8	81704	broad.mit.edu	37	chr9	432259	432259	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagcacctgagaagatccTtgaggacaattttggcctat	10	8	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	432259	C	C	432259	2	2	89	1	0	0	0	0	0	0	0	1	4733	1606	56	5		5	DOCK8	9	432259	Silent	SNP	T	TCGA-17-Z060-01A-01W-0747-08		432259	140781172	283	91297											
AQP7	364	broad.mit.edu	37	chr9	33385916	33385916	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcccctccccaagccacagGacctcggcagtgccccagac	10	20	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33385916	A	A	33385916	1	1	89	0	1	0	0	0	0	0	0	0	833	1189	41	4		4	AQP7	9	33385916	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	32953657	33385916	107827515	284	91298			1	72		3	3	286	G		1.164666e-05
AQP7	364	broad.mit.edu	37	chr9	33386084	33386084	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgaccactgacctcattcagGaagccccgccacaatgtcat	7	16	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33386084	A	A	33386084	2	1	89	1	0	0	0	0	0	0	0	1	833	1165	41	4		4	AQP7	9	33386084	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	168	33386084	107827347	285	91299			1	72		3	3	286	G		1.164666e-05
AQP7	364	broad.mit.edu	37	chr9	33386201	33386201	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggagaatggccgctgcggaGacacagactgtcatgcgaac	14	10	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33386201	C	C	33386201	1	2	89	0	1	0	0	0	0	0	0	0	833	957	33	4		4	AQP7	9	33386201	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	117	33386201	107827230	286	91300			1	72		3	3	286	G		1.164666e-05
SIGMAR1	10280	broad.mit.edu	37	chr9	34635808	34635808	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccatccatgtgtttggccCccactccacagctgttgcct	7	17	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34635808	T	T	34635808	3	4	89	1	0	0	0	0	1	0	0	0	14429	623	22	4	182	4	SIGMAR1	9	34635808	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1249607	34635808	106577623	287	91301											
FRMPD1	22844	broad.mit.edu	37	chr9	37732384	37732384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcggctctgcacatccaGgaacggatctacgcctgtgc	11	15	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37732384	T	T	37732384	3	4	89	1	0	0	0	0	1	0	0	0	6117	991	35	2	976	2	FRMPD1	9	37732384	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3096576	37732384	103481047	288	91302											
DIRAS2	54769	broad.mit.edu	37	chr9	93375674	93375674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaggtctccatgaaggCacacttccatgtgcgggcca	13	12	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93375674	A	A	93375674	3	1	89	1	0	0	0	0	1	0	0	0	4571	710	25	3	167	3	DIRAS2	9	93375674	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	55643290	93375674	47837757	289	91303											
IKBKAP	8518	broad.mit.edu	37	chr9	111689661	111689661	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaagcttacctgtggcaaGaagcaccagctcttggtcag	10	11	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111689661	A	A	111689661	3	1	89	1	0	0	0	0	1	0	0	0	7680	942	33	4	3758	4	IKBKAP	9	111689661	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	18313987	111689661	29523770	290	91304											
SVEP1	79987	broad.mit.edu	37	chr9	113275213	113275213	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtttgcatacctctgcaGtagctctctgaaccggacca	9	13	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113275213	T	T	113275213	4	4	89	1	0	0	0	0	0	1	0	0	15538	1024	36	3	9595	3	SVEP1	9	113275213	Nonsense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1585552	113275213	27938218	291	91305											
ZNF618	114991	broad.mit.edu	37	chr9	116750742	116750742	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgatgactacatccaggaGgtgatctggcagggcgaggc	15	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116750742	A	A	116750742	2	1	89	1	0	0	0	0	0	0	0	1	18169	991	35	4		4	ZNF618	9	116750742	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3475529	116750742	24462689	292	91306											
ASTN2	23245	broad.mit.edu	37	chr9	119977080	119977080	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttggaatcgagggctgcAggggattttcctgtccacta	12	9	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119977080	T	T	119977080	1	4	89	0	1	0	0	0	0	0	0	0	1069	203	7	5		5	ASTN2	9	119977080	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	3226338	119977080	21236351	293	91307											
LMX1B	4010	broad.mit.edu	37	chr9	129455736	129455736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgcacatcccatcataccCctaaacccaccatctccccg	2	22	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129455736	A	A	129455736	1	1	89	0	1	0	0	0	0	0	0	0	8936	638	22	2		2	LMX1B	9	129455736	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9478656	129455736	11757695	294	91308											
PTGES2	80142	broad.mit.edu	37	chr9	130884626	130884626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtccaggcaccacctgcCaccaccacactcaccaaatc	5	20	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130884626	A	A	130884626	1	1	89	0	1	0	0	0	0	0	0	0	12853	609	21	2		2	PTGES2	9	130884626	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1428890	130884626	10328805	295	91309											
PRRX2	51450	broad.mit.edu	37	chr9	132482836	132482836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaggacttgggtccccCctgcccatgctgcaccctgc	10	18	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132482836	A	A	132482836	1	1	89	0	1	0	0	0	0	0	0	0	12719	638	22	2		2	PRRX2	9	132482836	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1598210	132482836	8730595	296	91310											
GFI1B	8328	broad.mit.edu	37	chr9	135863743	135863743	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagtcagccttcctggagcActccgtcagcctgtacggca	11	15	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135863743	T	T	135863743	3	4	89	1	0	0	0	0	1	0	0	0	6404	159	6	5	408	5	GFI1B	9	135863743	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	3380907	135863743	5349688	297	91311											
OBP2B	29989	broad.mit.edu	37	chr9	136081894	136081894	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagacgaccacggcccagCaccaggacagggggagaggc	17	12	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136081894	T	T	136081894	1	4	89	0	1	0	0	0	0	0	0	0	10906	725	25	4		4	OBP2B	9	136081894	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	218151	136081894	5131537	298	91312											
ITIH5	80760	broad.mit.edu	37	chr10	7611659	7611659	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtgatcagagaccagcctGaggatgtccccgggctgccc	13	14	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7611659	T	T	7611659	2	4	89	1	0	0	0	0	0	0	0	1	7977	1277	45	3		3	ITIH5	10	7611659	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08		7611659	127923088	299	91313											
ITIH2	3698	broad.mit.edu	37	chr10	7755153	7755153	+	Missense_Mutation	SNP	C	A	A													tcattttctaggactgtggaCggcaagacatttaggagctc							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7755153	A	A	7755153	3	1	89	1	0	0	0	0	1	0	0	0	7974	535	19	3	390	3	ITIH2	10	7755153	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	143494	7755153	127779594	300	91314	410	2									
ITIH2	3698	broad.mit.edu	37	chr10	7755155	7755155	+	Missense_Mutation	SNP	G	C	C													attttctaggactgtggacgGcaagacatttaggagctcta							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7755155	C	C	7755155	3	2	89	1	0	0	0	0	1	0	0	0	7974	1203	42	4	392	4	ITIH2	10	7755155	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2	7755155	127779592	301	91315	410	2									
ITGA8	8516	broad.mit.edu	37	chr10	15634141	15634141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagcttttaaggccaaGggccttgacagatgacatca	12	8	1	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15634141	T	T	15634141	1	4	89	0	1	0	0	0	0	0	0	0	7952	1015	35	2		2	ITGA8	10	15634141	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7878986	15634141	119900606	302	91316											
CACNB2	783	broad.mit.edu	37	chr10	18825107	18825107	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatggtagcagctgataaActggctcagtgtcctccagt	11	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18825107	G	G	18825107	2	3	89	1	0	0	0	0	0	0	0	1	2579	40	2	5		5	CACNB2	10	18825107	Silent	SNP	A	TCGA-17-Z060-01A-01W-0747-08	3190966	18825107	116709640	303	91317											
PIP4K2A	5305	broad.mit.edu	37	chr10	22898559	22898559	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtacttacttgttaaaaaGgtgattgtccacctttattt	6	6	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22898559	C	C	22898559	3	2	89	1	0	0	0	0	1	0	0	0	12031	1000	35	4	1024	4	PIP4K2A	10	22898559	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4073452	22898559	112636188	304	91318											
CHAT	1103	broad.mit.edu	37	chr10	50824221	50824221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgggttccaggcaggaaCaaaggcagcactctgccagc	12	11	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50824221	A	A	50824221	1	1	89	0	1	0	0	0	0	0	0	0	3344	493	17	3		3	CHAT	10	50824221	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	27925662	50824221	84710526	305	91319											
OGDHL	55753	broad.mit.edu	37	chr10	50953850	50953850	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccccagacccaccaggtcCacgacaacatctttgttgaa	7	15	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50953850	A	A	50953850	2	1	89	1	0	0	0	0	0	0	0	1	10935	581	21	2		2	OGDHL	10	50953850	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	129629	50953850	84580897	306	91320											
RHOBTB1	9886	broad.mit.edu	37	chr10	62648417	62648417	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgaggaatcctaggcgGgccctcctccctttcttcct	10	16	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62648417	A	A	62648417	3	1	89	1	0	0	0	0	1	0	0	0	13442	1232	43	4	1105	4	RHOBTB1	10	62648417	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	11694567	62648417	72886330	307	91321											
DDX50	79009	broad.mit.edu	37	chr10	70700792	70700792	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgatttatttccaaacAtaatgtggtttttattcctt	5	7	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70700792	G	G	70700792	1	3	89	0	1	0	0	0	0	0	0	0	4401	232	8	5		5	DDX50	10	70700792	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	8052375	70700792	64833955	308	91322											
NDST2	8509	broad.mit.edu	37	chr10	75563160	75563160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggactggtgatttgaCagtattctgcccttacgctt	11	8	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75563160	T	T	75563160	1	4	89	0	1	0	0	0	0	0	0	0	10351	493	17	4		4	NDST2	10	75563160	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4862368	75563160	59971587	309	91323											
LRIT2	340745	broad.mit.edu	37	chr10	85982019	85982019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctggtgtggaggctggCcctctaggctgaggcaggcc	18	12	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85982019	A	A	85982019	3	1	89	1	0	0	0	0	1	0	0	0	9035	739	26	3	346	3	LRIT2	10	85982019	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	10418859	85982019	49552728	310	91324											
FAM35A	54537	broad.mit.edu	37	chr10	88939887	88939887	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatttcctattacagcatcTcagaagatagcgctaaatgc	7	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88939887	C	C	88939887	2	2	89	1	0	0	0	0	0	0	0	1	5604	1538	54	5		5	FAM35A	10	88939887	Silent	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2957868	88939887	46594860	311	91325											
MYOF	26509	broad.mit.edu	37	chr10	95072657	95072658	+	Intron	INS	-	A	A													acaaactgttcccataacttINSaaactcccaccaatttaaaa							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95072658	A	A	95072657	6	5	89	0	1	1	1	0	0	0	0	0	10183	1769	61	0		0	MYOF	10	95072657	Intron	INS	-	TCGA-17-Z060-01A-01W-0747-08	6132770	95072657	40462090	312	91326											
PDZD7	79955	broad.mit.edu	37	chr10	102789810	102789811	+	Frame_Shift_Ins	INS	-	G	G													cgatgaggctcggattccgcINSgggggggcccgttcagcagc							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102789811	G	G	102789810	7	5	89	1	0	1	1	0	0	0	0	0	11798	768	27	0	1422	0	PDZD7	10	102789810	Frame_Shift_Ins	INS	-	TCGA-17-Z060-01A-01W-0747-08	7717153	102789810	32744937	313	91327											
CCDC147	159686	broad.mit.edu	37	chr10	106121900	106121900	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaaactagtggagcagggGtctggactgtcaatggacca	13	9	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106121900	C	C	106121900	2	2	89	1	0	0	0	0	0	0	0	1	2807	1248	44	4		4	CCDC147	10	106121900	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3332090	106121900	29412847	314	91328											
ADD3	120	broad.mit.edu	37	chr10	111892043	111892043	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttgcatggcttttaActaaactcttatccaacaga	5	8	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111892043	T	T	111892043	1	4	89	0	1	0	0	0	0	0	0	0	306	58	2	5		5	ADD3	10	111892043	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	5770143	111892043	23642704	315	91329											
FAM160B1	57700	broad.mit.edu	37	chr10	116595168	116595168	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgacagttattaactggcCagttgcattgtcttttcaag	8	8	3	1	rs142343792	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116595168	T	T	116595168	1	4	89	0	1	0	0	0	0	0	0	0	5516	609	21	4		4	FAM160B1	10	116595168	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4703125	116595168	18939579	316	91330											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119805526	119805526	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagggttttctcagctacaGaggtggagtacttttccttg	11	8	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119805526	A	A	119805526	3	1	89	1	0	0	0	0	1	0	0	0	13002	942	33	4	1409	4	RAB11FIP2	10	119805526	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3210358	119805526	15729221	317	91331											
CTBP2	1488	broad.mit.edu	37	chr10	126681258	126681258	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagacaaagtcagttcctttTctcacctgtatgtggcacca	8	11	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126681258	C	C	126681258	1	2	89	0	1	0	0	0	0	0	0	0	4032	1798	62	5		5	CTBP2	10	126681258	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	6875732	126681258	8853489	318	91332											
TUBGCP2	10844	broad.mit.edu	37	chr10	135101728	135101728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggcgtgatgtcctccaCcggcttccggagctcctcct	13	15	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135101728	A	A	135101728	3	1	89	1	0	0	0	0	1	0	0	0	16892	507	18	3	1113	3	TUBGCP2	10	135101728	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	8420470	135101728	433019	319	91333											
MUC5B	727897	broad.mit.edu	37	chr11	1267038	1267038	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgccccagcaccccggcCaccagctctacggccacgcc	8	23	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1267038	A	A	1267038	2	1	89	1	0	0	0	0	0	0	0	1	10073	581	21	2		2	MUC5B	11	1267038	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08		1267038	133739478	320	91334											
IGF2	3481	broad.mit.edu	37	chr11	2156601	2156601	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccagctacttactgaaGtagaagccgcggtccccaca	8	16	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2156601	T	T	2156601	4	4	89	1	0	0	0	0	0	1	0	0	7642	1024	36	3	401	3	IGF2	11	2156601	Nonsense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	889563	2156601	132849915	321	91335											
OR52R1	119695	broad.mit.edu	37	chr11	4824914	4824914	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgaggcgggcttcacctgAgggcaactgaagcacagctc	13	11	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4824914	T	T	4824914	3	4	89	1	0	0	0	0	1	0	0	0	11225	304	11	5	253	5	OR52R1	11	4824914	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	2668313	4824914	130181602	322	91336											
SPON1	10418	broad.mit.edu	37	chr11	14156818	14156818	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttataggaactcagtcttatCactgaatggcacagggccta	9	9	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14156818	T	T	14156818	1	4	89	0	1	0	0	0	0	0	0	0	15200	841	29	4		4	SPON1	11	14156818	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9331904	14156818	120849698	323	91337											
SPON1	10418	broad.mit.edu	37	chr11	14282069	14282069	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcggtgtggaacactgtggGgtcagggagatcaacgaaaa	15	7	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14282069	A	A	14282069	1	1	89	0	1	0	0	0	0	0	0	0	15200	1247	43	4		4	SPON1	11	14282069	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	125251	14282069	120724447	324	91338											
TPH1	7166	broad.mit.edu	37	chr11	18062188	18062188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaaaaatacagaaaatgCttacctgaaagattttcagg	8	6	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18062188	A	A	18062188	1	1	89	0	1	0	0	0	0	0	0	0	16525	812	28	3		3	TPH1	11	18062188	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3780119	18062188	116944328	325	91339											
CCDC34	91057	broad.mit.edu	37	chr11	27384257	27384257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgcaaaaaaaaccacggCacctcagtctgcaagtgcct	8	12	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27384257	A	A	27384257	1	1	89	0	1	0	0	0	0	0	0	0	2834	725	25	3		3	CCDC34	11	27384257	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9322069	27384257	107622259	326	91340											
CAPRIN1	4076	broad.mit.edu	37	chr11	34118329	34118329	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatgtatctgcattagccTcctatgtgcaatttaaacaa	7	8	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34118329	G	G	34118329	1	3	89	0	1	0	0	0	0	0	0	0	2661	1566	54	5		5	CAPRIN1	11	34118329	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	6734072	34118329	100888187	327	91341											
PAMR1	25891	broad.mit.edu	37	chr11	35547170	35547170	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgagcgtctactggggaGggagaggagggacccaggga	20	9	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35547170	T	T	35547170	1	4	89	0	1	0	0	0	0	0	0	0	11507	1015	35	2		2	PAMR1	11	35547170	5'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1428841	35547170	99459346	328	91342											
SPRYD5	84767	broad.mit.edu	37	chr11	55648527	55648527	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccaagaatgacattcaGtgcagtctctttaccacctc	7	12	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55648527	T	T	55648527	1	4	89	0	1	0	0	0	0	0	0	0	15229	1044	36	3		3	SPRYD5	11	55648527	5'Flank	SNP	G	TCGA-17-Z060-01A-01W-0747-08	20101357	55648527	79357989	329	91343											
CTNND1	1500	broad.mit.edu	37	chr11	57575697	57575697	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catctcacttcttaaggagaGcaagactcctgccatcctag	7	13	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57575697	C	C	57575697	3	2	89	1	0	0	0	0	1	0	0	0	4053	971	34	4	2066	4	CTNND1	11	57575697	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1927170	57575697	77430819	330	91344											
OR5B2	390190	broad.mit.edu	37	chr11	58190779	58190779	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgtagcaatgagaaaTaaagcaatagagtgataaac	9	5	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58190779	A	A	58190779	1	1	89	0	1	0	0	0	0	0	0	0	11244	1421	49	5		5	OR5B2	11	58190779	5'Flank	SNP	T	TCGA-17-Z060-01A-01W-0747-08	615082	58190779	76815737	331	91345											
MPEG1	219972	broad.mit.edu	37	chr11	58979598	58979598	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcaaatttgaagttcacGgtgttttgaaaggcaagtcc	9	8	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58979598	C	C	58979598	2	2	89	1	0	0	0	0	0	0	0	1	9817	1103	39	4		4	MPEG1	11	58979598	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	788819	58979598	76026918	332	91346											
MS4A12	54860	broad.mit.edu	37	chr11	60269373	60269373	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaaactagatgaacataaAtagaccaacctttcatataa	5	7	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60269373	G	G	60269373	1	3	89	0	1	0	0	0	0	0	0	0	9950	116	4	5		5	MS4A12	11	60269373	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	1289775	60269373	74737143	333	91347											
SYT12	91683	broad.mit.edu	37	chr11	66807603	66807603	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggacctcctggagcgggagGaggccagcttcgagtcctgc	16	12	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66807603	T	T	66807603	4	4	89	1	0	0	0	0	0	1	0	0	15587	1175	41	3	560	3	SYT12	11	66807603	Nonsense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	6538230	66807603	68198913	334	91348											
MRGPRF	116535	broad.mit.edu	37	chr11	68777385	68777385	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatctccaggcctggcgcGtctgggcccctgctggcagc	14	17	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68777385	A	A	68777385	1	1	89	1	0	0	0	0	0	0	0	0	9859	1160	40	4		4	MRGPRF	11	68777385	Translation_Start_Site	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1969782	68777385	66229131	335	91349											
SHANK2	22941	broad.mit.edu	37	chr11	70505983	70505983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgccacgccaccccacCttcatccacggactccaggt	8	19	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70505983	A	A	70505983	3	1	89	1	0	0	0	0	1	0	0	0	14378	681	24	2	3578	2	SHANK2	11	70505983	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1728598	70505983	64500533	336	91350											
P4HA3	283208	broad.mit.edu	37	chr11	74000151	74000151	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaactcccgagagaggcTgagggcacacgaaacatttc	11	10	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74000151	A	A	74000151	3	1	89	1	0	0	0	0	1	0	0	0	11452	1580	55	5	928	5	P4HA3	11	74000151	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	3494168	74000151	61006365	337	91351											
DLG2	1740	broad.mit.edu	37	chr11	83170840	83170840	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaatgctcttctgtcgttGtcagaggcgcagtagctaat	10	9	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83170840	T	T	83170840	1	4	89	0	1	0	0	0	0	0	0	0	4595	1392	48	3		3	DLG2	11	83170840	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9170689	83170840	51835676	338	91352											
GRM5	2915	broad.mit.edu	37	chr11	88323694	88323694	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaagatgagtaacgcttgGggatgtgacccccctctccc	10	15	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88323694	A	A	88323694	1	1	89	0	1	0	0	0	0	0	0	0	6866	1247	43	4		4	GRM5	11	88323694	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5152854	88323694	46682822	339	91353											
FOLH1B	219595	broad.mit.edu	37	chr11	89409458	89409458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttagggaatctactgcaaCctctgacaggaagcagtgtg	13	8	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89409458	A	A	89409458	1	1	89	0	1	0	0	0	0	0	0	0	6038	522	18	3		3	FOLH1B	11	89409458	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1085764	89409458	45597058	340	91354											
ATM	472	broad.mit.edu	37	chr11	108178567	108178567	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagacacataaacaagaaggAagaaggtgtgtaagcaagaa	11	5	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108178567	T	T	108178567	1	4	89	0	1	0	0	0	0	0	0	0	1113	261	9	5		5	ATM	11	108178567	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	18769109	108178567	26827949	341	91355											
APOA4	337	broad.mit.edu	37	chr11	116691952	116691952	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccctcaggttgccacgCacgtcctcggccaagggcgc	12	17	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116691952	A	A	116691952	2	1	89	1	0	0	0	0	0	0	0	1	785	697	25	3		3	APOA4	11	116691952	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	8513385	116691952	18314564	342	91356											
PKNOX2	63876	broad.mit.edu	37	chr11	125281475	125281475	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccaagcctcacctccactCtctgaggggctggcatgggc	11	16	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125281475	A	A	125281475	1	1	89	0	1	0	0	0	0	0	0	0	12078	928	32	3		3	PKNOX2	11	125281475	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	8589523	125281475	9725041	343	91357											
ANO2	57101	broad.mit.edu	37	chr12	5708897	5708897	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagttttgacactaaagcCatctctgatccaaaaacaag	5	9	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5708897	G	G	5708897	1	3	89	0	1	0	0	0	0	0	0	0	697	609	21	4		4	ANO2	12	5708897	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08		5708897	128142998	344	91358											
KLRC1	3821	broad.mit.edu	37	chr12	10603002	10603002	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attacaatgagaactctattCcctgaaaatatgaaatgttt	5	6	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10603002	A	A	10603002	1	1	89	0	1	0	0	0	0	0	0	0	8486	870	30	3		3	KLRC1	12	10603002	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4894105	10603002	123248893	345	91359											
GRIN2B	2904	broad.mit.edu	37	chr12	13715638	13715638	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaccaagttcacccccGtcaccctccgtgacatgcgc	9	17	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13715638	A	A	13715638	1	1	89	0	1	0	0	0	0	0	0	0	6846	1160	40	4		4	GRIN2B	12	13715638	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3112636	13715638	120136257	346	91360											
PDE3A	5139	broad.mit.edu	37	chr12	20704816	20704816	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcatcccgtccaaccactAcggacccatcccggggatcc	7	19	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20704816	G	G	20704816	1	3	89	0	1	0	0	0	0	0	0	0	11731	406	14	5		5	PDE3A	12	20704816	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	6989178	20704816	113147079	347	91361											
SLCO1B1	10599	broad.mit.edu	37	chr12	21392247	21392247	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccacatcttttatggtggaAgtataaataagcctatgaac	7	7	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21392247	G	G	21392247	1	3	89	0	1	0	0	0	0	0	0	0	14837	87	3	5		5	SLCO1B1	12	21392247	3'UTR	SNP	A	TCGA-17-Z060-01A-01W-0747-08	687431	21392247	112459648	348	91362											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25398284	T	T	25398284	3	4	89	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4006037	25398284	108453611	349	91363											
TMEM117	84216	broad.mit.edu	37	chr12	44403633	44403633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttctgcacccagttctgGgtatccttgtgcaaaatggt	10	10	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44403633	T	T	44403633	1	4	89	0	1	0	0	0	0	0	0	0	16154	1247	43	2		2	TMEM117	12	44403633	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	19005349	44403633	89448262	350	91364											
NCKAP5L	57701	broad.mit.edu	37	chr12	50186578	50186578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctatgcctggcacctcccGctccagtgtgtgggcgcggc	13	16	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50186578	A	A	50186578	3	1	89	1	0	0	0	0	1	0	0	0	10319	1086	38	4	484	4	NCKAP5L	12	50186578	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5782945	50186578	83665317	351	91365											
SMARCD1	6602	broad.mit.edu	37	chr12	50492660	50492660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggttttcacccctgatggGggtcagtggtgttagatacc	15	8	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50492660	T	T	50492660	1	4	89	0	1	0	0	0	0	0	0	0	14891	1247	43	2		2	SMARCD1	12	50492660	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	306082	50492660	83359235	352	91366											
KRT80	144501	broad.mit.edu	37	chr12	52565917	52565917	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaaggagaactgacttTgtgtaggcctgggcctccag	14	8	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52565917	C	C	52565917	1	2	89	0	1	0	0	0	0	0	0	0	8565	1827	63	5		5	KRT80	12	52565917	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2073257	52565917	81285978	353	91367											
LRIG3	121227	broad.mit.edu	37	chr12	59277358	59277358	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtaaagacatgattgcGttgtcactcaggtctctgaa	9	9	3	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59277358	A	A	59277358	2	1	89	1	0	0	0	0	0	0	0	1	9033	1136	40	4		4	LRIG3	12	59277358	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	6711441	59277358	74574537	354	91368											
FAM19A2	338811	broad.mit.edu	37	chr12	62104158	62104158	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcatgttcaatgtcatcaGccttgaggatcacttgattt	9	9	4	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62104158	A	A	62104158	1	1	89	0	1	0	0	0	0	0	0	0	5579	986	34	4		4	FAM19A2	12	62104158	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2826800	62104158	71747737	355	91369											
FAM19A2	338811	broad.mit.edu	37	chr12	62148863	62148863	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttggacacttccccccacCcttctttttaattagcagta	4	14	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62148863	T	T	62148863	1	4	89	0	1	0	0	0	0	0	0	0	5579	638	22	4		4	FAM19A2	12	62148863	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	44705	62148863	71703032	356	91370											
USP15	9958	broad.mit.edu	37	chr12	62795017	62795017	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaatggtactattttgatGacagtagtgtctccactgca	9	7	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62795017	T	T	62795017	3	4	89	1	0	0	0	0	1	0	0	0	17172	1290	45	3	2716	3	USP15	12	62795017	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	646154	62795017	71056878	357	91371											
HELB	92797	broad.mit.edu	37	chr12	66698690	66698690	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgatatgtcaccaccaaatCaaaaacatatctgtgctctc	4	12	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66698690	T	T	66698690	4	4	89	1	0	0	0	0	0	1	0	0	7112	827	29	4	373	4	HELB	12	66698690	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3903673	66698690	67153205	358	91372											
PTPRB	5787	broad.mit.edu	37	chr12	70949592	70949592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatatgatagagaaaggtGcacagccccttcactccagt	10	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70949592	T	T	70949592	1	4	89	0	1	0	0	0	0	0	0	0	12904	1334	46	3		3	PTPRB	12	70949592	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4250902	70949592	62902303	359	91373											
ANO4	121601	broad.mit.edu	37	chr12	101460686	101460686	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaccacactgcccacatttCagaatccagagttttctgtt	6	12	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101460686	T	T	101460686	1	4	89	0	1	0	0	0	0	0	0	0	699	841	29	4		4	ANO4	12	101460686	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	30511094	101460686	32391209	360	91374											
CORO1C	23603	broad.mit.edu	37	chr12	109041101	109041101	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctccctttccgccctcCctaggaccacaccaataacc	5	20	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109041101	T	T	109041101	1	4	89	0	1	0	0	0	0	0	0	0	3787	638	22	4		4	CORO1C	12	109041101	3'UTR	SNP	C	TCGA-17-Z060-01A-01W-0747-08	7580415	109041101	24810794	361	91375											
UBE3B	89910	broad.mit.edu	37	chr12	109926250	109926250	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccaagagaaaaagaattaAgactgacttataatcctgac	7	8	0	5			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109926250	T	T	109926250	1	4	89	0	1	0	0	0	0	0	0	0	17006	87	3	5		5	UBE3B	12	109926250	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	885149	109926250	23925645	362	91376											
CIT	11113	broad.mit.edu	37	chr12	120213792	120213792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagaggaagaacagtggcCtctcagggaagactttgtcc	15	8	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120213792	A	A	120213792	1	1	89	0	1	0	0	0	0	0	0	0	3469	696	24	2		2	CIT	12	120213792	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	10287542	120213792	13638103	363	91377											
DNAH10	196385	broad.mit.edu	37	chr12	124341758	124341758	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacgatgcggtagagcaggtCctggaggagaacggctacgc	16	9	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124341758	A	A	124341758	2	1	89	1	0	0	0	0	0	0	0	1	4638	842	30	3		3	DNAH10	12	124341758	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4127966	124341758	9510137	364	91378											
C13orf33	84935	broad.mit.edu	37	chr13	31498737	31498737	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttctgcttctgtggatgtGatgccctggcaggcccaggg	14	11	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31498737	A	A	31498737	1	1	89	0	1	0	0	0	0	0	0	0	1740	1305	45	4		4	C13orf33	13	31498737	3'UTR	SNP	G	TCGA-17-Z060-01A-01W-0747-08		31498737	83671141	365	91379											
TEP1	7011	broad.mit.edu	37	chr14	20848270	20848270	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagaatgcaaacaggagttGatttatgtgcttctgtgcct	11	6	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20848270	A	A	20848270	1	1	89	0	1	0	0	0	0	0	0	0	15881	1305	45	4		4	TEP1	14	20848270	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08		20848270	86501270	366	91380											
CMTM5	116173	broad.mit.edu	37	chr14	23847491	23847491	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggggagcttccaaggaggGgaaggcaaagccctggcccc	16	11	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847491	A	A	23847491	1	1	89	0	1	0	0	0	0	0	0	0	3618	1247	43	4		4	CMTM5	14	23847491	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2999221	23847491	83502049	367	91381											
MYH6	4624	broad.mit.edu	37	chr14	23868310	23868310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaggcttccacagtccCataccctgacaggaaaagga	8	15	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23868310	A	A	23868310	1	1	89	0	1	0	0	0	0	0	0	0	10132	609	21	2		2	MYH6	14	23868310	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	20819	23868310	83481230	368	91382											
KHNYN	23351	broad.mit.edu	37	chr14	24901122	24901122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctcagccttgctgggtGctcagtgccaaggagtgaga	16	9	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24901122	T	T	24901122	3	4	89	1	0	0	0	0	1	0	0	0	8220	1319	46	3	661	3	KHNYN	14	24901122	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1032812	24901122	82448418	369	91383											
NPAS3	64067	broad.mit.edu	37	chr14	34243788	34243788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgttgcacattggtgagGgttgtgtttcagccgtctga	14	8	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34243788	T	T	34243788	1	4	89	0	1	0	0	0	0	0	0	0	10659	1247	43	2		2	NPAS3	14	34243788	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9342666	34243788	73105752	370	91384											
EGLN3	112399	broad.mit.edu	37	chr14	34398210	34398210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacatgcacaggacacacGtttaaagagttctctggaac	8	12	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34398210	T	T	34398210	1	4	89	0	1	0	0	0	0	0	0	0	5010	1160	40	3		3	EGLN3	14	34398210	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	154422	34398210	72951330	371	91385											
FOXA1	3169	broad.mit.edu	37	chr14	38061776	38061776	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggccggcccctaggccCgggttggcataggacatgtt	14	13	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38061776	A	A	38061776	2	1	89	1	0	0	0	0	0	0	0	1	6047	639	23	1		1	FOXA1	14	38061776	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3663566	38061776	69287764	372	91386											
JKAMP	51528	broad.mit.edu	37	chr14	59965536	59965536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagattgcatgtgggttaGggaaatctgatcgatttaaa	12	3	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59965536	T	T	59965536	3	4	89	1	0	0	0	0	1	0	0	0	8019	1000	35	2	568	2	JKAMP	14	59965536	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	21903760	59965536	47384004	373	91387											
SLC38A6	145389	broad.mit.edu	37	chr14	61503886	61503886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttatagagcacattatttGtttagaaaaaggaaagaagg	9	3	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61503886	T	T	61503886	1	4	89	0	1	0	0	0	0	0	0	0	14722	1392	48	3		3	SLC38A6	14	61503886	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1538350	61503886	45845654	374	91388											
PRKCH	5583	broad.mit.edu	37	chr14	61857846	61857846	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttatttgatttgtggctgTgatttacacattaggcctct	8	6	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61857846	G	G	61857846	1	3	89	0	1	0	0	0	0	0	0	0	12619	1711	59	5		5	PRKCH	14	61857846	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	353960	61857846	45491694	375	91389											
KCNH5	27133	broad.mit.edu	37	chr14	63417001	63417001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcctccttcccatatccCagcactggtattgtagcgat	9	13	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63417001	A	A	63417001	3	1	89	1	0	0	0	0	1	0	0	0	8105	594	21	2	1801	2	KCNH5	14	63417001	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1559155	63417001	43932539	376	91390											
SYNE2	23224	broad.mit.edu	37	chr14	64428310	64428310	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacagtttctgcagtattcCaaagatgcccctgggactgg	11	11	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64428310	T	T	64428310	2	4	89	1	0	0	0	0	0	0	0	1	15565	581	21	4		4	SYNE2	14	64428310	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1011309	64428310	42921230	377	91391											
MAX	4149	broad.mit.edu	37	chr14	65544178	65544178	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaggcgggtgtgagcaTtgagaacagcatgggcctag	17	6	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65544178	C	C	65544178	1	2	89	0	1	0	0	0	0	0	0	0	9431	1508	52	5		5	MAX	14	65544178	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	1115868	65544178	41805362	378	91392											
ZNF410	57862	broad.mit.edu	37	chr14	74370901	74370901	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccctcaggttgacaaatTacaggaaagtagggactcca	10	10	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74370901	G	G	74370901	1	3	89	0	1	0	0	0	0	0	0	0	18017	1769	61	5		5	ZNF410	14	74370901	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	8826723	74370901	32978639	379	91393											
ADCK1	57143	broad.mit.edu	37	chr14	78365798	78365798	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaaagaaatatcaagtgtGattgttgacccattagtcaa	8	6	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78365798	A	A	78365798	1	1	89	0	1	0	0	0	0	0	0	0	288	1305	45	4		4	ADCK1	14	78365798	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3994897	78365798	28983742	380	91394											
AHNAK2	113146	broad.mit.edu	37	chr14	105406157	105406157	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccacttccagctttcCagccccgcctctgtccctga	7	19	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105406157	A	A	105406157	4	1	89	1	0	0	0	0	0	1	0	0	415	603	21	2	1760	2	AHNAK2	14	105406157	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	27040359	105406157	1943383	381	91395											
CYFIP1	23191	broad.mit.edu	37	chr15	22928529	22928530	+	Intron	INS	-	G	G													ggtaaaatggcaaataatctINSggggggggtgtaacaccgag							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22928530	G	G	22928529	6	5	89	0	1	1	1	0	0	0	0	0	4170	1595	55	0		0	CYFIP1	15	22928529	Intron	INS	-	TCGA-17-Z060-01A-01W-0747-08		22928529	79602863	382	91396											
SNRPN	6638	broad.mit.edu	37	chr15	25220671	25220671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaagtaaggctgatttgGgcaaatgggggttggacaca	15	5	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25220671	T	T	25220671	1	4	89	0	1	0	0	0	0	0	0	0	14984	1247	43	2		2	SNRPN	15	25220671	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2292142	25220671	77310721	383	91397											
UBE3A	7337	broad.mit.edu	37	chr15	25600999	25600999	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatacatgctttgaaagtgTtaatgaagagacaaaatgtg	10	4	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25600999	C	C	25600999	1	2	89	0	1	0	0	0	0	0	0	0	17005	1740	60	5		5	UBE3A	15	25600999	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	380328	25600999	76930393	384	91398											
APBA2	321	broad.mit.edu	37	chr15	29390776	29390776	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggttttaaatgcagacacGcaggtaagcgtttaagacag	11	6	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29390776	A	A	29390776	2	1	89	1	0	0	0	0	0	0	0	1	759	1074	38	4		4	APBA2	15	29390776	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3789777	29390776	73140616	385	91399											
TRPM1	4308	broad.mit.edu	37	chr15	31368994	31368994	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgttagtgactcccatgGggaatggattctggccaccc	11	12	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31368994	A	A	31368994	1	1	89	0	1	0	0	0	0	0	0	0	16710	1247	43	4		4	TRPM1	15	31368994	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1978218	31368994	71162398	386	91400											
C15orf55	256646	broad.mit.edu	37	chr15	34640188	34640188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatctgcattgccgggacCggatatgagcatgaaaccta	11	10	1	2	rs138920290	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34640188	A	A	34640188	3	1	89	1	0	0	0	0	1	0	0	0	1816	652	23	1	41	1	C15orf55	15	34640188	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3271194	34640188	67891204	387	91401											
CKMT1A	548596	broad.mit.edu	37	chr15	43990846	43990846	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcctctctaggatagccGcttcccaaagatcctggaga	8	13	2	2	rs142460452		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43990846	A	A	43990846	3	1	89	1	0	0	0	0	1	0	0	0	3480	1087	38	4	1049	4	CKMT1A	15	43990846	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9350658	43990846	58540546	388	91402											
C15orf33	196951	broad.mit.edu	37	chr15	49657621	49657621	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaactcttctacagtacgCaagcaacaggcctgtacaat	6	12	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49657621	G	G	49657621	1	3	89	0	1	0	0	0	0	0	0	0	1804	725	25	4		4	C15orf33	15	49657621	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5666775	49657621	52873771	389	91403											
SIN3A	25942	broad.mit.edu	37	chr15	75706514	75706514	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaatcaatatgccagatAcaaagcttgagtacaatcac	5	10	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75706514	G	G	75706514	1	3	89	0	1	0	0	0	0	0	0	0	14438	406	14	5		5	SIN3A	15	75706514	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	26048893	75706514	26824878	390	91404											
ADAMTS7	11173	broad.mit.edu	37	chr15	79051803	79051803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggcctcgggagggggcgCcgtggctgggcggagagcac	22	10	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79051803	A	A	79051803	3	1	89	1	0	0	0	0	1	0	0	0	271	739	26	3	43	3	ADAMTS7	15	79051803	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3345289	79051803	23479589	391	91405											
RASGRF1	5923	broad.mit.edu	37	chr15	79338971	79338971	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcttgggcacttctgtcCtctctgggcctcatctgcac	9	14	5	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79338971	A	A	79338971	1	1	89	0	1	0	0	0	0	0	0	0	13180	696	24	2		2	RASGRF1	15	79338971	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	287168	79338971	23192421	392	91406											
TM6SF1	53346	broad.mit.edu	37	chr15	83784772	83784772	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attactcagagacagaaatcCtctcatttagtgtgaacagg	8	8	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83784772	T	T	83784772	1	4	89	0	1	0	0	0	0	0	0	0	16095	696	24	4		4	TM6SF1	15	83784772	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4445801	83784772	18746620	393	91407											
FANCI	55215	broad.mit.edu	37	chr15	89858441	89858441	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggtttctcagaggtgaacTaaaaatggcttaagctgttc	10	6	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89858441	A	A	89858441	1	1	89	0	1	0	0	0	0	0	0	0	5726	1537	53	5		5	FANCI	15	89858441	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	6073669	89858441	12672951	394	91408											
PGPEP1L	145814	broad.mit.edu	37	chr15	99511696	99511696	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaattttctctagaggagCaatcccccggtcagttccct	7	13	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99511696	G	G	99511696	1	3	89	0	1	0	0	0	0	0	0	0	11899	725	25	4		4	PGPEP1L	15	99511696	3'UTR	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9653255	99511696	3019696	395	91409											
SNX29	92017	broad.mit.edu	37	chr16	12662399	12662399	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcctgtgaacagccgGcccaaagcagcttcccgctt	12	14	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12662399	C	C	12662399	2	2	89	1	0	0	0	0	0	0	0	1	15012	1190	42	4		4	SNX29	16	12662399	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08		12662399	77692354	396	91410											
PDXDC1	23042	broad.mit.edu	37	chr16	15082476	15082476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatagatcttgacaggctgGccacgggactccacggactc	12	13	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15082476	T	T	15082476	1	4	89	0	1	0	0	0	0	0	0	0	11790	1218	42	3		3	PDXDC1	16	15082476	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2420077	15082476	75272277	397	91411											
ACSM1	116285	broad.mit.edu	37	chr16	20693868	20693868	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgtctgcatcgaaataCcctaacttcttgttatgtaa	7	9	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20693868	T	T	20693868	1	4	89	0	1	0	0	0	0	0	0	0	182	522	18	4		4	ACSM1	16	20693868	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5611392	20693868	69660885	398	91412											
DNAH3	55567	broad.mit.edu	37	chr16	20996463	20996463	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctctccttgggtcctgGctgcagtctgcatcttctcc	8	16	4	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20996463	A	A	20996463	3	1	89	1	0	0	0	0	1	0	0	0	4643	1203	42	4	4808	4	DNAH3	16	20996463	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	302595	20996463	69358290	399	91413											
EEF2K	29904	broad.mit.edu	37	chr16	22269910	22269910	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccacccctgctccgtccCctttcagagaactctggaga	9	17	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22269910	T	T	22269910	2	4	89	1	0	0	0	0	0	0	0	1	4970	610	22	4		4	EEF2K	16	22269910	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1273447	22269910	68084843	400	91414											
GTF3C1	2975	broad.mit.edu	37	chr16	27476787	27476787	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccaagctgcaggtgttttCctgggggtttatcagcttgg	13	9	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27476787	A	A	27476787	4	1	89	1	0	0	0	0	0	1	0	0	6937	864	30	3	1200	3	GTF3C1	16	27476787	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5206877	27476787	62877966	401	91415											
GTF3C1	2975	broad.mit.edu	37	chr16	27561364	27561365	+	5'Flank	DNP	TC	AA	AA													gcgcgccggcatgacgtcacTccccgggggcgggctcagta							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	27561365	AA	AA	27561364	1	1	89	0	1	0	0	0	0	0	0	0	6937	1566	54	5		5	GTF3C1	16	27561364	5'Flank	DNP	TC	TCGA-17-Z060-01A-01W-0747-08	84577	27561364	62793389	402	91416											
PRSS53	339105	broad.mit.edu	37	chr16	31106861	31106861	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctgcagcctcccatcctCccgggtcctgcctcaccagt	10	19	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31106861	T	T	31106861	1	4	89	0	1	0	0	0	0	0	0	0	12738	870	30	4		4	PRSS53	16	31106861	5'Flank	SNP	C	TCGA-17-Z060-01A-01W-0747-08	3545497	31106861	59247892	403	91417											
MT1A	4489	broad.mit.edu	37	chr16	56670402	56670402	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaaagagtgcaaatgcaCctcctgcaagaagagtgagt	12	8	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56670402	A	A	56670402	1	1	89	0	1	0	0	0	0	0	0	0	9991	522	18	3		3	MT1A	16	56670402	5'Flank	SNP	C	TCGA-17-Z060-01A-01W-0747-08	25563541	56670402	33684351	404	91418											
GPR114	221188	broad.mit.edu	37	chr16	57597789	57597789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatgcccggggtcagcaCgccatgcagttccccgccga	12	17	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57597789	A	A	57597789	3	1	89	1	0	0	0	0	1	0	0	0	6696	535	19	3	341	3	GPR114	16	57597789	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	927387	57597789	32756964	405	91419											
GPR56	9289	broad.mit.edu	37	chr16	57697431	57697431	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggcccctcccctctgaaGagcaactcagacagcgccag	11	16	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57697431	T	T	57697431	3	4	89	1	0	0	0	0	1	0	0	0	6765	933	33	3	2084	3	GPR56	16	57697431	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	99642	57697431	32657322	406	91420											
LRRC36	55282	broad.mit.edu	37	chr16	67401389	67401389	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgtcagtttacaggtcTtcttcataggcatgaagata	8	8	4	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67401389	G	G	67401389	1	3	89	0	1	0	0	0	0	0	0	0	9077	1624	56	5		5	LRRC36	16	67401389	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	9703958	67401389	22953364	407	91421											
HYDIN	54768	broad.mit.edu	37	chr16	71127621	71127621	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtaacggcgaataaatgtGattgcatactctttccatca	8	8	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71127621	A	A	71127621	1	1	89	0	1	0	0	0	0	0	0	0	7537	1305	45	4		4	HYDIN	16	71127621	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3726232	71127621	19227132	408	91422											
HYDIN	54768	broad.mit.edu	37	chr16	71220865	71220865	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaacaaatacagttaattCctgaatacaggtcataattt	5	6	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71220865	A	A	71220865	1	1	89	0	1	0	0	0	0	0	0	0	7537	870	30	3		3	HYDIN	16	71220865	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	93244	71220865	19133888	409	91423											
DHX38	9785	broad.mit.edu	37	chr16	72137651	72137651	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatgtcagtggccaagagAgtcagtgaagagatgggggg	18	6	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72137651	T	T	72137651	3	4	89	1	0	0	0	0	1	0	0	0	4551	301	11	5	1834	5	DHX38	16	72137651	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	916786	72137651	18217102	410	91424											
PKD1L2	114780	broad.mit.edu	37	chr16	81222569	81222569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatccacatatggaccaGgttggatgtacacctccata	9	10	0	0	rs28534622		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81222569	T	T	81222569	3	4	89	1	0	0	0	0	1	0	0	0	12060	1000	35	2	5878	2	PKD1L2	16	81222569	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9084918	81222569	9132184	411	91425											
FANCA	2175	broad.mit.edu	37	chr16	89865685	89865685	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagatgtcagcacacggcGgcagcccaccagaaacaatc	9	14	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89865685	A	A	89865685	1	1	89	0	1	0	0	0	0	0	0	0	5719	1131	39	4		4	FANCA	16	89865685	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	8643116	89865685	489068	412	91426											
GEMIN4	50628	broad.mit.edu	37	chr17	651064	651064	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctgcagaaccttggcccaGatgatgatcagggctttctt	12	10	2	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	651064	T	T	651064	2	4	89	1	0	0	0	0	0	0	0	1	6394	932	33	3		3	GEMIN4	17	651064	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08		651064	80544146	413	91427											
PITPNA	5306	broad.mit.edu	37	chr17	1438691	1438691	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccacagggagcggcccacCcacatgctgcccagccccct	9	21	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1438691	T	T	1438691	1	4	89	0	1	0	0	0	0	0	0	0	12042	638	22	4		4	PITPNA	17	1438691	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	787627	1438691	79756519	414	91428											
ANKFY1	51479	broad.mit.edu	37	chr17	4120342	4120342	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagttcagtcaggaacacatCatcctctctgaactccagct	6	14	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4120342	T	T	4120342	3	4	89	1	0	0	0	0	1	0	0	0	626	826	29	4	3298	4	ANKFY1	17	4120342	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2681651	4120342	77074868	415	91429											
NLRP1	22861	broad.mit.edu	37	chr17	5415694	5415694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttcgtgatctgtggacCcacacttgtaacatcttcta	6	10	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5415694	A	A	5415694	1	1	89	0	1	0	0	0	0	0	0	0	10566	638	22	2		2	NLRP1	17	5415694	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1295352	5415694	75779516	416	91430											
ALOX12	239	broad.mit.edu	37	chr17	6913618	6913618	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggccccaagcccaaagctgTgctaaaccaattccgaacag	8	14	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6913618	A	A	6913618	3	1	89	1	0	0	0	0	1	0	0	0	536	1696	59	5	1922	5	ALOX12	17	6913618	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	1497924	6913618	74281592	417	91431											
ACAP1	9744	broad.mit.edu	37	chr17	7249688	7249688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagctggacatctggccCcttatcaccttatcctgcca	7	16	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7249688	A	A	7249688	1	1	89	0	1	0	0	0	0	0	0	0	118	638	22	2		2	ACAP1	17	7249688	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	336070	7249688	73945522	418	91432											
CCDC144A	9720	broad.mit.edu	37	chr17	16649707	16649707	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattctctgcttttctaatTttctatttttaatatattcc	2	7	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16649707	G	G	16649707	1	3	89	0	1	0	0	0	0	0	0	0	2803	1856	64	5		5	CCDC144A	17	16649707	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	9400019	16649707	64545503	419	91433											
ALKBH5	54890	broad.mit.edu	37	chr17	18098417	18098417	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagatgtagctctgggtccActtagaactcagctcctatg	11	10	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18098417	G	G	18098417	1	3	89	0	1	0	0	0	0	0	0	0	530	174	6	5		5	ALKBH5	17	18098417	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	1448710	18098417	63096793	420	91434											
EVPLL	645027	broad.mit.edu	37	chr17	18284916	18284916	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggccaccttcttgacaGcatcgagcagctgcacgagc	11	14	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18284916	T	T	18284916	5	4	89	1	0	0	0	0	0	0	1	0	5335	985	34	3	228	3	EVPLL	17	18284916	Splice_Site	SNP	G	TCGA-17-Z060-01A-01W-0747-08	186499	18284916	62910294	421	91435											
KSR1	8844	broad.mit.edu	37	chr17	25919482	25919482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctctcctctgccttctGgatttgggtgaatctttagc	8	12	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25919482	T	T	25919482	1	4	89	0	1	0	0	0	0	0	0	0	8653	1363	47	2		2	KSR1	17	25919482	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7634566	25919482	55275728	422	91436											
ACACA	31	broad.mit.edu	37	chr17	35687289	35687289	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaacctattatgaatcgAgagtgctggttcagctccag	10	9	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35687289	G	G	35687289	2	3	89	1	0	0	0	0	0	0	0	1	106	291	11	5		5	ACACA	17	35687289	Silent	SNP	A	TCGA-17-Z060-01A-01W-0747-08	9767807	35687289	45507921	423	91437											
IGFBP4	3487	broad.mit.edu	37	chr17	38609369	38609369	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagatgaaggtcaatggggCgccccgggaggatgcccggc	17	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38609369	T	T	38609369	3	4	89	1	0	0	0	0	1	0	0	0	7651	768	27	4	488	4	IGFBP4	17	38609369	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2922080	38609369	42585841	424	91438											
KRT9	3857	broad.mit.edu	37	chr17	39723454	39723454	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaaggtgagaccttgactCtccaccccacaacctaggat	7	13	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39723454	A	A	39723454	1	1	89	0	1	0	0	0	0	0	0	0	8572	928	32	3		3	KRT9	17	39723454	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1114085	39723454	41471756	425	91439											
ACLY	47	broad.mit.edu	37	chr17	40034439	40034439	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccattggccacgagatcttCgtatacagacctgggaggca	11	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40034439	T	T	40034439	3	4	89	1	0	0	0	0	1	0	0	0	143	893	31	4	933	4	ACLY	17	40034439	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	310985	40034439	41160771	426	91440											
EPX	8288	broad.mit.edu	37	chr17	56274428	56274428	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctcacctcctttgtggaCgccagcatggtgtatggcag	13	12	1	0	rs150544366	byFrequency	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56274428	T	T	56274428	2	4	89	1	0	0	0	0	0	0	0	1	5242	535	19	4		4	EPX	17	56274428	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	16239989	56274428	24920782	427	91441											
SCN4A	6329	broad.mit.edu	37	chr17	62041867	62041867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttttgaacttctcaagCatctgctgaaactcctcctc	5	13	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62041867	A	A	62041867	3	1	89	1	0	0	0	0	1	0	0	0	14033	710	25	3	4161	3	SCN4A	17	62041867	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5767439	62041867	19153343	428	91442											
PRKAR1A	5573	broad.mit.edu	37	chr17	66526261	66526261	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttctaactgcagtctttTttggctctgagagggaaggt	11	6	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66526261	C	C	66526261	1	2	89	0	1	0	0	0	0	0	0	0	12609	1856	64	5		5	PRKAR1A	17	66526261	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	4484394	66526261	14668949	429	91443											
TTYH2	94015	broad.mit.edu	37	chr17	72256330	72256330	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcacctgaggcactacggGaatcagtttccagcctaaca	10	12	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72256330	A	A	72256330	2	1	89	1	0	0	0	0	0	0	0	1	16866	1161	41	4		4	TTYH2	17	72256330	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	5730069	72256330	8938880	430	91444											
METRNL	284207	broad.mit.edu	37	chr17	81042956	81042956	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcgcctgcccggcacctgAccgtgtgcatcaggtccttc	10	17	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81042956	T	T	81042956	3	4	89	1	0	0	0	0	1	0	0	0	9582	275	10	5	319	5	METRNL	17	81042956	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	8786626	81042956	152254	431	91445											
FAM38B	63895	broad.mit.edu	37	chr18	10672704	10672704	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacccatagccagccaggaaCcccagacttgggggactgac	11	14	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10672704	T	T	10672704	2	4	89	1	0	0	0	0	0	0	0	1	5606	494	18	4		4	FAM38B	18	10672704	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08		10672704	67404544	432	91446											
SPIRE1	56907	broad.mit.edu	37	chr18	12450838	12450838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgggtgagatgcggaatAacttaaatgacagtgaaaag	13	4	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12450838	G	G	12450838	1	3	89	0	1	0	0	0	0	0	0	0	15189	377	13	5		5	SPIRE1	18	12450838	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	1778134	12450838	65626410	433	91447											
IMPACT	55364	broad.mit.edu	37	chr18	22008782	22008782	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctttataaatatggttaCttttgaaccttgatgaagtg	8	4	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22008782	A	A	22008782	1	1	89	0	1	0	0	0	0	0	0	0	7794	580	20	3		3	IMPACT	18	22008782	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9557944	22008782	56068466	434	91448											
DSG1	1828	broad.mit.edu	37	chr18	28916419	28916419	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatataaactgaaagcaTctgcaatttctgtgactgtg	7	8	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28916419	A	A	28916419	3	1	89	1	0	0	0	0	1	0	0	0	4816	1435	50	5	1142	5	DSG1	18	28916419	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	6907637	28916419	49160829	435	91449											
DSG4	147409	broad.mit.edu	37	chr18	28980983	28980983	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagatcctggctatagatGgtaagaaaatttattttcag	9	5	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28980983	A	A	28980983	3	1	89	1	0	0	0	0	1	0	0	0	4819	1362	47	4	1455	4	DSG4	18	28980983	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	64564	28980983	49096265	436	91450											
ASXL3	80816	broad.mit.edu	37	chr18	31250636	31250636	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttttattatgttttgtaGgctttgaggcagcagcagaa	10	5	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31250636	T	T	31250636	5	4	89	1	0	0	0	0	0	0	1	0	1072	1014	35	2	499	2	ASXL3	18	31250636	Splice_Site	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2269653	31250636	46826612	437	91451											
RTTN	25914	broad.mit.edu	37	chr18	67843821	67843822	+	Intron	DEL	CA	-	-													ggcctaaagcacaataccttCacaccatgaaaagagcagaa							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67843822	-	-	67843821	6	5	89	0	1	1	0	1	0	0	0	0	13848	841	29	0		0	RTTN	18	67843821	Intron	DEL	CA	TCGA-17-Z060-01A-01W-0747-08	36593185	67843821	10233427	438	91452											
NETO1	81832	broad.mit.edu	37	chr18	70526020	70526020	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactatgaagatagaaaaaTgaggaagaaaaagaaatttt	9	1	0	6			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70526020	G	G	70526020	1	3	89	0	1	0	0	0	0	0	0	0	10434	1479	51	5		5	NETO1	18	70526020	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2682199	70526020	7551228	439	91453											
AES	166	broad.mit.edu	37	chr19	3061240	3061240	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaatttgagttgctgggGtaggtgcgaggagccctgta	18	5	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3061240	A	A	3061240	3	1	89	1	0	0	0	0	1	0	0	0	352	1261	44	4	574	4	AES	19	3061240	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08		3061240	56067743	440	91454											
STXBP2	6813	broad.mit.edu	37	chr19	7705739	7705739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgggtggggcaaggagGtgtgggggctgctctggcct	22	6	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7705739	T	T	7705739	1	4	89	0	1	0	0	0	0	0	0	0	15471	1276	44	3		3	STXBP2	19	7705739	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4644499	7705739	51423244	441	91455											
FBN3	84467	broad.mit.edu	37	chr19	8206690	8206690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgacgcagctgcctcccTggcacaggcctggcacagcc	12	16	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8206690	C	C	8206690	3	2	89	1	0	0	0	0	1	0	0	0	5761	1580	55	5	7881	5	FBN3	19	8206690	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	500951	8206690	50922293	442	91456											
USHBP1	83878	broad.mit.edu	37	chr19	17367579	17367579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacactggcaggcataggtgGgttaagttcatgccaatcct	11	9	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17367579	T	T	17367579	1	4	89	0	1	0	0	0	0	0	0	0	17163	1247	43	2		2	USHBP1	19	17367579	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9160889	17367579	41761404	443	91457											
GLT25D1	79709	broad.mit.edu	37	chr19	17671210	17671210	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctgactcacgctacgagcAtgtcatgaagttgcgccagg	12	11	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17671210	T	T	17671210	3	4	89	1	0	0	0	0	1	0	0	0	6530	217	8	5	435	5	GLT25D1	19	17671210	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	303631	17671210	41457773	444	91458											
TM6SF2	53345	broad.mit.edu	37	chr19	19381871	19381871	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacctcgccatgggacaaGctgtagaccgccacgaaaag	12	12	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19381871	A	A	19381871	2	1	89	1	0	0	0	0	0	0	0	1	16096	962	34	4		4	TM6SF2	19	19381871	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1710661	19381871	39747112	445	91459											
ZNF100	163227	broad.mit.edu	37	chr19	21910505	21910505	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattttttacatttgaaaggTttctttctagtatgtcttat	5	5	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21910505	C	C	21910505	2	2	89	1	0	0	0	0	0	0	0	1	17839	1722	60	5		5	ZNF100	19	21910505	Silent	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2528634	21910505	37218478	446	91460											
ZNF536	9745	broad.mit.edu	37	chr19	31047980	31047980	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattccattaaacgattaggGgatgtggccctgcccttgct	10	10	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31047980	A	A	31047980	1	1	89	0	1	0	0	0	0	0	0	0	18101	1247	43	4		4	ZNF536	19	31047980	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	9137475	31047980	28081003	447	91461											
ARHGAP33	115703	broad.mit.edu	37	chr19	36270988	36270988	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatctaggtgtttgaccaatAgctctgagtgacaggggctc	12	8	2	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36270988	T	T	36270988	1	4	89	0	1	0	0	0	0	0	0	0	884	435	15	5		5	ARHGAP33	19	36270988	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	5223008	36270988	22857995	448	91462											
ZNF567	163081	broad.mit.edu	37	chr19	37210123	37210123	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgagtataatggatatgGgaaatcactcctgagtacta	10	5	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37210123	T	T	37210123	3	4	89	1	0	0	0	0	1	0	0	0	18125	1232	43	2	414	2	ZNF567	19	37210123	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	939135	37210123	21918860	449	91463											
RYR1	6261	broad.mit.edu	37	chr19	38949747	38949747	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttatcattggttctgtggGacctgtgacgtctgacccat	11	9	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38949747	T	T	38949747	1	4	89	0	1	0	0	0	0	0	0	0	13879	1189	41	3		3	RYR1	19	38949747	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1739624	38949747	20179236	450	91464											
SARS2	54938	broad.mit.edu	37	chr19	39439344	39439344	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaacaagagttgaacatAtggttcacctgccagcctgc	10	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39439344	T	T	39439344	1	4	89	0	1	0	0	0	0	0	0	0	13957	464	16	5		5	SARS2	19	39439344	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	489597	39439344	19689639	451	91465											
TIMM50	92609	broad.mit.edu	37	chr19	39973716	39973716	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggagattccttttctgtAtgtgatggggttctgcctct	11	9	3	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39973716	T	T	39973716	1	4	89	0	1	0	0	0	0	0	0	0	16036	464	16	5		5	TIMM50	19	39973716	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	534372	39973716	19155267	452	91466											
DYRK1B	9149	broad.mit.edu	37	chr19	40316843	40316843	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggctgttcatctcacagtCtgtgatagggggcccagggc	16	10	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40316843	A	A	40316843	3	1	89	1	0	0	0	0	1	0	0	0	4895	913	32	3	402	3	DYRK1B	19	40316843	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	343127	40316843	18812140	453	91467											
SPTBN4	57731	broad.mit.edu	37	chr19	41078156	41078156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcttcaactcccagtgGgaccctggcttccctggggg	12	15	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41078156	T	T	41078156	1	4	89	0	1	0	0	0	0	0	0	0	15239	1247	43	2		2	SPTBN4	19	41078156	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	761313	41078156	18050827	454	91468											
ZNF229	7772	broad.mit.edu	37	chr19	44932705	44932705	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accttgaagatgtgagctctGactatagcccttcccacaca	7	13	1	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44932705	C	C	44932705	3	2	89	1	0	0	0	0	1	0	0	0	17908	1299	45	4	230	4	ZNF229	19	44932705	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3854549	44932705	14196278	455	91469											
CLPTM1	1209	broad.mit.edu	37	chr19	45489713	45489713	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccccccatgttgcctcagAgggctgaggactatgggcct	12	13	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45489713	T	T	45489713	3	4	89	1	0	0	0	0	1	0	0	0	3586	318	11	5	699	5	CLPTM1	19	45489713	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	557008	45489713	13639270	456	91470											
ERCC2	2068	broad.mit.edu	37	chr19	45867504	45867504	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggccccacctgagcaccgtCttctgcagggtctccaggtt	11	16	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45867504	A	A	45867504	3	1	89	1	0	0	0	0	1	0	0	0	5255	912	32	3	1595	3	ERCC2	19	45867504	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	377791	45867504	13261479	457	91471											
LIG1	3978	broad.mit.edu	37	chr19	48653192	48653192	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaccaccccagtgctcagGgagatgggagacaggctggt	15	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48653192	A	A	48653192	1	1	89	0	1	0	0	0	0	0	0	0	8853	1247	43	4		4	LIG1	19	48653192	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	2785688	48653192	10475791	458	91472											
TRPM4	54795	broad.mit.edu	37	chr19	49703715	49703715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggcggggccaaagtgGgcggggacatagggaaaggg	23	6	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49703715	T	T	49703715	1	4	89	0	1	0	0	0	0	0	0	0	16713	1247	43	2		2	TRPM4	19	49703715	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1050523	49703715	9425268	459	91473											
CPT1C	126129	broad.mit.edu	37	chr19	50210786	50210786	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgacagctggtttgacaAatccttcaccctaatcgtct	6	14	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50210786	T	T	50210786	3	4	89	1	0	0	0	0	1	0	0	0	3865	14	1	5	1397	5	CPT1C	19	50210786	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	507071	50210786	8918197	460	91474											
GPR32	2854	broad.mit.edu	37	chr19	51274220	51274220	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactctacatcacctttgtGttcctcagctactttgccag	5	13	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51274220	T	T	51274220	2	4	89	1	0	0	0	0	0	0	0	1	6753	1364	48	3		3	GPR32	19	51274220	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1063434	51274220	7854763	461	91475											
SIGLEC12	89858	broad.mit.edu	37	chr19	52000281	52000281	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggtcagatcggggtgcagTgggcagaccaacccctgccc	15	13	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52000281	A	A	52000281	1	1	89	0	1	0	0	0	0	0	0	0	14421	1711	59	5		5	SIGLEC12	19	52000281	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	726061	52000281	7128702	462	91476											
ZNF578	147660	broad.mit.edu	37	chr19	53014631	53014631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtcatcccttacatgcCatcataggtgtcacactggt	7	12	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53014631	A	A	53014631	3	1	89	1	0	0	0	0	1	0	0	0	18137	594	21	2	1007	2	ZNF578	19	53014631	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1014350	53014631	6114352	463	91477											
ZNF28	7576	broad.mit.edu	37	chr19	53302200	53302200	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcacttgtaaggtttctctCcagtgtgaattctagtatgg	10	7	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53302200	A	A	53302200	1	1	89	0	1	0	0	0	0	0	0	0	17939	870	30	3		3	ZNF28	19	53302200	3'UTR	SNP	C	TCGA-17-Z060-01A-01W-0747-08	287569	53302200	5826783	464	91478											
VSTM1	284415	broad.mit.edu	37	chr19	54554771	54554771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggggacaggagtcctcaCgtcctacttatagacatcct	9	12	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54554771	A	A	54554771	1	1	89	0	1	0	0	0	0	0	0	0	17355	551	19	3		3	VSTM1	19	54554771	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1252571	54554771	4574212	465	91479											
LILRB5	10990	broad.mit.edu	37	chr19	54756860	54756860	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttcccagaccttgagcgtGatgacgttgggaatggggat	14	9	0	4			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54756860	T	T	54756860	1	4	89	0	1	0	0	0	0	0	0	0	8866	1305	45	3		3	LILRB5	19	54756860	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	202089	54756860	4372123	466	91480											
NLRP7	199713	broad.mit.edu	37	chr19	55452714	55452714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccactgcactccagccttaCactccagcctgggcgacaga	9	17	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55452714	T	T	55452714	1	4	89	0	1	0	0	0	0	0	0	0	10577	493	17	4		4	NLRP7	19	55452714	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	695854	55452714	3676269	467	91481											
TNNI3	7137	broad.mit.edu	37	chr19	55665260	55665260	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccttctacttcctgtcttCctcttgcatttctgaggacc	5	16	4	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55665260	A	A	55665260	1	1	89	0	1	0	0	0	0	0	0	0	16451	870	30	3		3	TNNI3	19	55665260	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	212546	55665260	3463723	468	91482											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56736248	56736248	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagagcctggatggggtcCgactccttcgggcagctgaa	14	12	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56736248	A	A	56736248	2	1	89	1	0	0	0	0	0	0	0	1	18367	639	23	1		1	ZSCAN5A	19	56736248	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1070988	56736248	2392735	469	91483											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56833712	56833712	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggacttctcattgtctgccGccagatctggcttcccctat	8	14	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56833712	C	C	56833712	1	2	89	0	1	0	0	0	0	0	0	0	18367	1102	38	4		4	ZSCAN5A	19	56833712	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	97464	56833712	2295271	470	91484											
ZNF814	730051	broad.mit.edu	37	chr19	58384234	58384234	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actctggtgtacaaggaggtGagacttcttgttaaataatt	10	5	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58384234	T	T	58384234	3	4	89	1	0	0	0	0	1	0	0	0	18305	1290	45	3	47	3	ZNF814	19	58384234	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1550522	58384234	744749	471	91485											
SIRPD	128646	broad.mit.edu	37	chr20	1538424	1538424	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggggattgtgatgagaGgaaaggccaggggactggga	21	3	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1538424	T	T	1538424	1	4	89	0	1	0	0	0	0	0	0	0	14448	1015	35	2		2	SIRPD	20	1538424	5'Flank	SNP	G	TCGA-17-Z060-01A-01W-0747-08		1538424	61487096	472	91486											
TMC2	117532	broad.mit.edu	37	chr20	2592817	2592817	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagctccttcctaccccacAcctccatcttctgttctagc	3	19	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2592817	G	G	2592817	1	3	89	0	1	0	0	0	0	0	0	0	16108	174	6	5		5	TMC2	20	2592817	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	1054393	2592817	60432703	473	91487											
ZNF133	7692	broad.mit.edu	37	chr20	18296289	18296289	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagacaccagaaggcacactCgggggagaagccaattgtgt	13	10	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18296289	T	T	18296289	3	4	89	1	0	0	0	0	1	0	0	0	17849	893	31	4	801	4	ZNF133	20	18296289	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	15703472	18296289	44729231	474	91488											
MAPRE1	22919	broad.mit.edu	37	chr20	31427528	31427528	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttttcaaaaacctgtgCtctctttttcagctccccag	4	15	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31427528	T	T	31427528	1	4	89	0	1	0	0	0	0	0	0	0	9386	812	28	4		4	MAPRE1	20	31427528	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	13131239	31427528	31597992	475	91489											
MATN4	8785	broad.mit.edu	37	chr20	43933171	43933171	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtactggattgccagtcCcgtcatggtgccttgcgcca	13	13	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43933171	A	A	43933171	4	1	89	1	0	0	0	0	0	1	0	0	9428	632	22	2	1437	2	MATN4	20	43933171	Nonsense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	12505643	43933171	19092349	476	91490											
CDH22	64405	broad.mit.edu	37	chr20	44839281	44839281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggaggccaaggcaggcgGggttggcccaaggtcacacg	19	10	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44839281	T	T	44839281	1	4	89	0	1	0	0	0	0	0	0	0	3137	1247	43	2		2	CDH22	20	44839281	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	906110	44839281	18186239	477	91491											
KCNB1	3745	broad.mit.edu	37	chr20	47991417	47991418	+	Missense_Mutation	DNP	GG	AA	AA													cctccacgtgggccagctggGggttgtctgtggactggccg							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47991418	AA	AA	47991417	3	1	89	1	0	0	0	0	1	0	0	0	8082	1232	43	4	1900	4	KCNB1	20	47991417	Missense_Mutation	DNP	GG	TCGA-17-Z060-01A-01W-0747-08	3152136	47991417	15034103	478	91492											
FAM65C	140876	broad.mit.edu	37	chr20	49218697	49218697	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggcctcagcaactccaggAcctcctgcagaggcccctcg	11	17	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49218697	G	G	49218697	3	3	89	1	0	0	0	0	1	0	0	0	5652	275	10	5	1321	5	FAM65C	20	49218697	Missense_Mutation	SNP	A	TCGA-17-Z060-01A-01W-0747-08	1227280	49218697	13806823	479	91493											
RAB22A	57403	broad.mit.edu	37	chr20	56886045	56886045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgccacaaagtagtttttGgtgtctgccaaaaggtaaac	9	7	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56886045	T	T	56886045	1	4	89	0	1	0	0	0	0	0	0	0	13017	1363	47	2		2	RAB22A	20	56886045	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	7667348	56886045	6139475	480	91494											
ZNF831	128611	broad.mit.edu	37	chr20	57768689	57768689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagggggctcaaaggagaGtgccaggcaggtgggcgagc	20	9	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57768689	T	T	57768689	3	4	89	1	0	0	0	0	1	0	0	0	18314	1029	36	3	2617	3	ZNF831	20	57768689	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	882644	57768689	5256831	481	91495											
C20orf195	79025	broad.mit.edu	37	chr20	62187642	62187642	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgctgagcaccaagatgcCtgtcgtgtttgaccgaaagg	12	10	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62187642	T	T	62187642	3	4	89	1	0	0	0	0	1	0	0	0	2122	681	24	4	628	4	C20orf195	20	62187642	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4418953	62187642	837878	482	91496											
BAGE2	85319	broad.mit.edu	37	chr21	11049511	11049511	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgttttaatggagtaaCcgctgtatccaggcacattc	9	10	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11049511	T	T	11049511	1	4	89	0	1	0	0	0	0	0	0	0	1297	522	18	4		4	BAGE2	21	11049511	3'UTR	SNP	C	TCGA-17-Z060-01A-01W-0747-08		11049511	37080384	483	91497											
TMPRSS15	5651	broad.mit.edu	37	chr21	19756129	19756129	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggatataagaggaaaaagTcagccatcttccactgattt	9	7	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19756129	C	C	19756129	1	2	89	0	1	0	0	0	0	0	0	0	16369	1682	58	5		5	TMPRSS15	21	19756129	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	8706618	19756129	28373766	484	91498											
RNF160	26046	broad.mit.edu	37	chr21	30329087	30329087	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactcatatatacttacttaTtttctcaagctcattatttt	1	8	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30329087	A	A	30329087	3	1	89	1	0	0	0	0	1	0	0	0	13566	1493	52	5	2284	5	RNF160	21	30329087	Missense_Mutation	SNP	T	TCGA-17-Z060-01A-01W-0747-08	10572958	30329087	17800808	485	91499											
TIAM1	7074	broad.mit.edu	37	chr21	32497056	32497056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagagaatcagggcttaaCacatggggaacttctaaggt	12	6	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32497056	A	A	32497056	1	1	89	0	1	0	0	0	0	0	0	0	16013	493	17	3		3	TIAM1	21	32497056	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2167969	32497056	15632839	486	91500											
DOPEY2	9980	broad.mit.edu	37	chr21	37649267	37649267	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcttttggggacagtaaAtggtgacccatccatcatag	12	8	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37649267	G	G	37649267	1	3	89	0	1	0	0	0	0	0	0	0	4748	116	4	5		5	DOPEY2	21	37649267	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	5152211	37649267	10480628	487	91501											
RSPH1	89765	broad.mit.edu	37	chr21	43896062	43896062	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcccggctctcttcccGgaggacgtctgcatcttcat	8	15	4	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43896062	T	T	43896062	2	4	89	1	0	0	0	0	0	0	0	1	13813	1115	39	1		1	RSPH1	21	43896062	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	6246795	43896062	4233833	488	91502											
C21orf29	54084	broad.mit.edu	37	chr21	46122595	46122595	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcccctcctgttgtgcacCcgccttctcctgccagccca	7	21	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46122595	T	T	46122595	1	4	89	0	1	0	0	0	0	0	0	0	2146	638	22	4		4	C21orf29	21	46122595	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2226533	46122595	2007300	489	91503											
GAB4	128954	broad.mit.edu	37	chr22	17445725	17445725	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcgtggagatggggtgTtgggaggagctggagtcaaa	19	5	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17445725	C	C	17445725	2	2	89	1	0	0	0	0	0	0	0	1	6211	1722	60	5		5	GAB4	22	17445725	Silent	SNP	T	TCGA-17-Z060-01A-01W-0747-08		17445725	33858841	490	91504											
CECR2	27443	broad.mit.edu	37	chr22	18018822	18018822	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtagtggtaagcagggaagGagtttgtgctagatacatat	14	3	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18018822	C	C	18018822	1	2	89	0	1	0	0	0	0	0	0	0	3236	1189	41	4		4	CECR2	22	18018822	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	573097	18018822	33285744	491	91505											
CECR2	27443	broad.mit.edu	37	chr22	18022493	18022493	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gacagcccagagatgattgcGatgcagcagctctcctcccg	11	14	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18022493	C	C	18022493	2	2	89	1	0	0	0	0	0	0	0	1	3236	1045	37	4		4	CECR2	22	18022493	Silent	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3671	18022493	33282073	492	91506											
GNAZ	2781	broad.mit.edu	37	chr22	23438214	23438214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagctctttgcgctgaCgggccccgctgagagcaagg	15	12	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23438214	A	A	23438214	3	1	89	1	0	0	0	0	1	0	0	0	6578	536	19	3	334	3	GNAZ	22	23438214	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5415721	23438214	27866352	493	91507											
PIWIL3	440822	broad.mit.edu	37	chr22	25156012	25156012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctactgtgttcattctccCtccaaatggcactcgcaggg	8	15	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25156012	A	A	25156012	1	1	89	0	1	0	0	0	0	0	0	0	12054	696	24	2		2	PIWIL3	22	25156012	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1717798	25156012	26148554	494	91508											
PES1	23481	broad.mit.edu	37	chr22	30976163	30976163	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggacacttccccaccaaaaCtcctacagggacagggagag	10	13	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30976163	G	G	30976163	3	3	89	1	0	0	0	0	1	0	0	0	11827	565	20	4	740	4	PES1	22	30976163	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5820151	30976163	20328403	495	91509											
LIMK2	3985	broad.mit.edu	37	chr22	31644745	31644745	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggcttacttcacctccagaGacctgtttcggtgagttggt	11	11	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31644745	T	T	31644745	1	4	89	0	1	0	0	0	0	0	0	0	8874	942	33	3		3	LIMK2	22	31644745	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	668582	31644745	19659821	496	91510											
SFI1	9814	broad.mit.edu	37	chr22	31979927	31979927	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaaagagagctgctcCccttactgcatgctgcctgg	11	11	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31979927	T	T	31979927	3	4	89	1	0	0	0	0	1	0	0	0	14269	623	22	4	1361	4	SFI1	22	31979927	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	335182	31979927	19324639	497	91511											
MYH9	4627	broad.mit.edu	37	chr22	36714238	36714238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagccagctgccctggcCccagaggacatacctgctct	11	16	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36714238	A	A	36714238	1	1	89	0	1	0	0	0	0	0	0	0	10136	638	22	2		2	MYH9	22	36714238	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	4734311	36714238	14590328	498	91512											
IL3RA	3563	broad.mit.edu	37	chrX	1471176	1471176	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtccctggtgcgggtgccatCggcgtggggtcgtcccccaa	16	14	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1471176	G	G	1471176	1	3	89	0	1	0	0	0	0	0	0	0	7765	899	31	4		4	IL3RA	23	1471176	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08		1471176	153799384	499	91513											
DHRSX	207063	broad.mit.edu	37	chrX	2161034	2161035	+	Intron	DEL	CC	-	-													tgtagcatcttcaggtgcagCcgtgaatcagagaagcagaa							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2161035	-	-	2161034	6	5	89	0	1	1	0	1	0	0	0	0	4539	754	26	0		0	DHRSX	23	2161034	Intron	DEL	CC	TCGA-17-Z060-01A-01W-0747-08	689858	2161034	153109526	500	91514											
MXRA5	25878	broad.mit.edu	37	chrX	3242840	3242840	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accatcctcttcctgttcttGctcctcctcaatactcctgc	3	18	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3242840	C	C	3242840	3	2	89	1	0	0	0	0	1	0	0	0	10097	1328	46	4	7612	4	MXRA5	23	3242840	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1081806	3242840	152027720	501	91515											
KAL1	3730	broad.mit.edu	37	chrX	8553266	8553266	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attccatgtgtgcctggtagCaaggatagtattctgtgtct	11	7	2	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8553266	G	G	8553266	1	3	89	0	1	0	0	0	0	0	0	0	8044	725	25	4		4	KAL1	23	8553266	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	5310426	8553266	146717294	502	91516											
TBL1X	6907	broad.mit.edu	37	chrX	9661033	9661033	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgcaaggtcttacgaTagctttcagcatggtatttt	8	7	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9661033	A	A	9661033	1	1	89	0	1	0	0	0	0	0	0	0	15761	1421	49	5		5	TBL1X	23	9661033	Intron	SNP	T	TCGA-17-Z060-01A-01W-0747-08	1107767	9661033	145609527	503	91517											
TBL1X	6907	broad.mit.edu	37	chrX	9677597	9677597	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggccccgtgtgcacccCcgggaggaatgattccacat	12	15	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9677597	T	T	9677597	1	4	89	0	1	0	0	0	0	0	0	0	15761	638	22	4		4	TBL1X	23	9677597	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	16564	9677597	145592963	504	91518											
CLCN4	1183	broad.mit.edu	37	chrX	10181882	10181882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccacatccacttaaatGggtaccctttccttgacgtg	8	13	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10181882	T	T	10181882	3	4	89	1	0	0	0	0	1	0	0	0	3496	1348	47	2	1772	2	CLCN4	23	10181882	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	504285	10181882	145088678	505	91519											
TLR7	51284	broad.mit.edu	37	chrX	12904932	12904932	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgaataaaatatcaccTtcaggagattcaagtgaagt	8	6	4	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12904932	A	A	12904932	2	1	89	1	0	0	0	0	0	0	0	1	16079	1596	56	5		5	TLR7	23	12904932	Silent	SNP	T	TCGA-17-Z060-01A-01W-0747-08	2723050	12904932	142365628	506	91520											
GLRA2	2742	broad.mit.edu	37	chrX	14748434	14748434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggccacacctgccaacCcactcccacaaccgccaaaa	4	20	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14748434	A	A	14748434	3	1	89	1	0	0	0	0	1	0	0	0	6519	623	22	2	1292	2	GLRA2	23	14748434	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1843502	14748434	140522126	507	91521											
ASB11	140456	broad.mit.edu	37	chrX	15306300	15306300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttaagtaccatgacataCttgacaaatgtttgaaaata	5	5	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15306300	A	A	15306300	1	1	89	0	1	0	0	0	0	0	0	0	1019	580	20	3		3	ASB11	23	15306300	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	557866	15306300	139964260	508	91522											
BMX	660	broad.mit.edu	37	chrX	15543557	15543557	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggaaaactaaccaaacttGcaataattttgcagctaggc	7	9	0	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15543557	C	C	15543557	1	2	89	0	1	0	0	0	0	0	0	0	1479	1334	46	4		4	BMX	23	15543557	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	237257	15543557	139727003	509	91523											
MAP3K15	389840	broad.mit.edu	37	chrX	19392585	19392585	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgccccagctgtccaggGaggcctcacctgagggcttg	14	14	1	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19392585	T	T	19392585	1	4	89	0	1	0	0	0	0	0	0	0	9341	1189	41	3		3	MAP3K15	23	19392585	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	3849028	19392585	135877975	510	91524											
MAP7D2	256714	broad.mit.edu	37	chrX	20082923	20082923	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttcaaaaatccctccatgCctacaaaggagaaaactaga	5	10	1	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20082923	G	G	20082923	3	3	89	1	0	0	0	0	1	0	0	0	9360	753	26	4	2250	4	MAP7D2	23	20082923	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	690338	20082923	135187637	511	91525											
POLA1	5422	broad.mit.edu	37	chrX	24755699	24755699	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagataaatcctctaatttGcatttgttataacattatca	4	6	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24755699	C	C	24755699	1	2	89	0	1	0	0	0	0	0	0	0	12282	1334	46	4		4	POLA1	23	24755699	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4672776	24755699	130514861	512	91526											
MAGEB6	158809	broad.mit.edu	37	chrX	26212996	26212996	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagataagtacgtggtttacCggcaggtgtgcaacagtgat	13	6	0	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26212996	A	A	26212996	2	1	89	1	0	0	0	0	0	0	0	1	9271	643	23	1		1	MAGEB6	23	26212996	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1457297	26212996	129057564	513	91527											
GPR34	2857	broad.mit.edu	37	chrX	41555023	41555023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccaaatgttactacctGtcccatggatgaaaaattgc	6	10	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41555023	T	T	41555023	3	4	89	1	0	0	0	0	1	0	0	0	6754	1377	48	3	139	3	GPR34	23	41555023	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	15342027	41555023	113715537	514	91528											
GPR34	2857	broad.mit.edu	37	chrX	41555104	41555131	+	Frame_Shift_Del	DEL	TAATCGCCCTCTATGTATTTCTGGGTAT	-	-													cgtgggactggttgggaacaTaatcgccctctatgtatttc							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41555131	-	-	41555104	7	5	89	1	0	1	0	1	0	0	0	0	6754	1406	49	0	220	0	GPR34	23	41555104	Frame_Shift_Del	DEL	TAATCGCCCTCTATGTATTTCTGGGTAT	TCGA-17-Z060-01A-01W-0747-08	81	41555104	113715456	515	91529											
ZNF674	641339	broad.mit.edu	37	chrX	46388454	46388454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgaggtcctttacatGtactaaagatttcagtcttc	6	10	2	2			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46388454	T	T	46388454	1	4	89	0	1	0	0	0	0	0	0	0	18208	1392	48	3		3	ZNF674	23	46388454	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4833350	46388454	108882106	516	91530											
SLC38A5	92745	broad.mit.edu	37	chrX	48318013	48318013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaagatgaggctggggGctgaggtggaccctggagaa	20	5	0	5			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48318013	T	T	48318013	3	4	89	1	0	0	0	0	1	0	0	0	14721	1203	42	3	200	3	SLC38A5	23	48318013	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1929559	48318013	106952547	517	91531											
WAS	7454	broad.mit.edu	37	chrX	48546713	48546713	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacctcgacccagatctgCggagtctgttctccagggca	10	14	3	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48546713	A	A	48546713	2	1	89	1	0	0	0	0	0	0	0	1	17378	759	27	3		3	WAS	23	48546713	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	228700	48546713	106723847	518	91532											
GPKOW	27238	broad.mit.edu	37	chrX	48979004	48979005	+	Frame_Shift_Ins	INS	-	T	T													cttcacagcctgggacaccaINSccccatccgccaaggcccca							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48979005	T	T	48979004	7	5	89	1	0	1	1	0	0	0	0	0	6678	159	6	0	1171	0	GPKOW	23	48979004	Frame_Shift_Ins	INS	-	TCGA-17-Z060-01A-01W-0747-08	432291	48979004	106291556	519	91533											
GAGE2A	729447	broad.mit.edu	37	chrX	49208295	49208296	+	Intron	INS	-	TAT	TAT													gttggcgaggaagatcgaccINStatcggcctagaccaagacg							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TAT	49208296	TAT	TAT	49208295	6	5	89	0	1	1	1	0	0	0	0	0	6251	668	24	0		0	GAGE2A	23	49208295	Intron	INS	-	TCGA-17-Z060-01A-01W-0747-08	229291	49208295	106062265	520	91534											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	89	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-17-Z060-01A-01W-0747-08	4444552	53652847	101617713	521	91535											
MAGED2	10916	broad.mit.edu	37	chrX	54840152	54840152	+	Intron	SNP	C	A	A													gtgatgggaaacaggagcagCacatgtttcctgatctgtta							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54840152	A	A	54840152	1	1	89	0	1	0	0	0	0	0	0	0	9276	725	25	3		3	MAGED2	23	54840152	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	1187305	54840152	100430408	522	91536	411	2									
MAGED2	10916	broad.mit.edu	37	chrX	54840154	54840154	+	Intron	SNP	C	A	A													gatgggaaacaggagcagcaCatgtttcctgatctgttaca							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54840154	A	A	54840154	1	1	89	0	1	0	0	0	0	0	0	0	9276	493	17	3		3	MAGED2	23	54840154	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	2	54840154	100430406	523	91537	411	2									
ZC3H12B	340554	broad.mit.edu	37	chrX	64722402	64722402	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttggctgtagctgatacCcatcctgaaggcaatttgaa	9	8	0	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64722402	T	T	64722402	2	4	89	1	0	0	0	0	0	0	0	1	17688	610	22	4		4	ZC3H12B	23	64722402	Silent	SNP	C	TCGA-17-Z060-01A-01W-0747-08	9882248	64722402	90548158	524	91538											
AR	367	broad.mit.edu	37	chrX	66937656	66937656	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaactggcaggagcccaggAggatggtgctgagaccaccc	14	13	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66937656	T	T	66937656	1	4	89	0	1	0	0	0	0	0	0	0	838	319	11	5		5	AR	23	66937656	Intron	SNP	A	TCGA-17-Z060-01A-01W-0747-08	2215254	66937656	88332904	525	91539											
SATL1	340562	broad.mit.edu	37	chrX	84363285	84363285	+	Frame_Shift_Del	DEL	T	-	-													catgattggctagtgtctggTtgccttatgcctggttggct							TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84363285	-	-	84363285	7	5	89	1	0	1	0	1	0	0	0	0	13967	1722	60	0	1228	0	SATL1	23	84363285	Frame_Shift_Del	DEL	T	TCGA-17-Z060-01A-01W-0747-08	17425629	84363285	70907275	526	91540											
IL1RAPL2	26280	broad.mit.edu	37	chrX	103891987	103891987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagctcgatcaggccgtccCctgcggtggccagtgagttg	14	13	2	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103891987	T	T	103891987	1	4	89	0	1	0	0	0	0	0	0	0	7732	638	22	4		4	IL1RAPL2	23	103891987	Intron	SNP	C	TCGA-17-Z060-01A-01W-0747-08	19528702	103891987	51378573	527	91541											
NRK	203447	broad.mit.edu	37	chrX	105197057	105197057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagcgaaccacaggatgGggccaaaaggccattgaagt	12	10	0	1			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105197057	T	T	105197057	3	4	89	1	0	0	0	0	1	0	0	0	10750	1241	43	2	4655	2	NRK	23	105197057	Missense_Mutation	SNP	G	TCGA-17-Z060-01A-01W-0747-08	1305070	105197057	50073503	528	91542											
CHRDL1	91851	broad.mit.edu	37	chrX	110006084	110006084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttaggaaacatcaaccaaGtcacaaaattcaaaagcaat	5	8	3	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110006084	T	T	110006084	1	4	89	0	1	0	0	0	0	0	0	0	3404	1044	36	3		3	CHRDL1	23	110006084	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	4809027	110006084	45264476	529	91543											
ATP2B3	492	broad.mit.edu	37	chrX	152806797	152806797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccatcctccccttctgtGcttccggggcaccatgcagg	9	17	1	0			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152806797	T	T	152806797	1	4	89	0	1	0	0	0	0	0	0	0	1145	1334	46	3		3	ATP2B3	23	152806797	Intron	SNP	G	TCGA-17-Z060-01A-01W-0747-08	42800713	152806797	2463763	530	91544											
TKTL1	8277	broad.mit.edu	37	chrX	153541038	153541038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccagcaggaatcttgacCcacagccccccattgaggac	9	15	1	3			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153541038	A	A	153541038	3	1	89	1	0	0	0	0	1	0	0	0	16058	623	22	2	800	2	TKTL1	23	153541038	Missense_Mutation	SNP	C	TCGA-17-Z060-01A-01W-0747-08	734241	153541038	1729522	531	91545											
CLSTN1	22883	broad.mit.edu	37	chr1	9793954	9793954	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaacattctcagatggcagGcagcagccagccaagagctc	10	13	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9793954	C	C	9793954	1	2	90	0	1	0	0	0	0	0	0	0	3593	1218	42	4		4	CLSTN1	1	9793954	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08		9793954	239456667	1	91546											
KIF1B	23095	broad.mit.edu	37	chr1	10435101	10435101	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaccagcaggccatggtGaaggtccgtcctgccctgcc	14	14	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10435101	A	A	10435101	2	1	90	1	0	0	0	0	0	0	0	1	8354	1277	45	4		4	KIF1B	1	10435101	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	641147	10435101	238815520	2	91547											
MTHFR	4524	broad.mit.edu	37	chr1	11851250	11851250	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcggggcaagcttgccCccggctcctttaccttccag	13	15	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11851250	T	T	11851250	1	4	90	0	1	0	0	0	0	0	0	0	10025	638	22	4		4	MTHFR	1	11851250	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1416149	11851250	237399371	3	91548											
NBPF1	55672	broad.mit.edu	37	chr1	16890958	16890958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtgacatactggtaagGgagtaaaaggacactctgag	13	7	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16890958	T	T	16890958	1	4	90	0	1	0	0	0	0	0	0	0	10286	1247	43	2		2	NBPF1	1	16890958	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5039708	16890958	232359663	4	91549											
PLA2G5	5322	broad.mit.edu	37	chr1	20416369	20416369	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctacaaatacagattcgcGtggggcgtggtcacctgcgg	13	11	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20416369	A	A	20416369	2	1	90	1	0	0	0	0	0	0	0	1	12102	1132	40	4		4	PLA2G5	1	20416369	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3525411	20416369	228834252	5	91550											
MUL1	79594	broad.mit.edu	37	chr1	20827905	20827905	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgaatgatctttgagcAatcattcctagaagaataag	8	6	2	6			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20827905	T	T	20827905	3	4	90	1	0	0	0	0	1	0	0	0	10078	130	5	5	725	5	MUL1	1	20827905	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	411536	20827905	228422716	6	91551											
HSPG2	3339	broad.mit.edu	37	chr1	22159916	22159916	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgaagaccctgccagtcaGggagtgggcagggcactgcc	16	12	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22159916	C	C	22159916	1	2	90	0	1	0	0	0	0	0	0	0	7500	1015	35	4		4	HSPG2	1	22159916	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1332011	22159916	227090705	7	91552											
CSMD2	114784	broad.mit.edu	37	chr1	34008578	34008578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataactgcccagagtggaagCcacatgctacctcgggacct	10	13	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34008578	A	A	34008578	1	1	90	0	1	0	0	0	0	0	0	0	3979	754	26	3		3	CSMD2	1	34008578	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	11848662	34008578	215242043	8	91553											
CSMD2	114784	broad.mit.edu	37	chr1	34083348	34083348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctttctctcatcctgtaGgctagttcttcccaactctc	6	14	4	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34083348	T	T	34083348	1	4	90	0	1	0	0	0	0	0	0	0	3979	1015	35	2		2	CSMD2	1	34083348	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	74770	34083348	215167273	9	91554											
CSMD2	114784	broad.mit.edu	37	chr1	34128802	34128802	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctaaacctacaaagcccTaaacctccgaagcccagcag	6	17	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34128802	A	A	34128802	1	1	90	0	1	0	0	0	0	0	0	0	3979	1537	53	5		5	CSMD2	1	34128802	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	45454	34128802	215121819	10	91555											
RHBDL2	54933	broad.mit.edu	37	chr1	39352285	39352285	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttcagcagtgctttatcaAagcagctaaacaccgtgtag	8	10	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39352285	T	T	39352285	3	4	90	1	0	0	0	0	1	0	0	0	13431	14	1	5	112	5	RHBDL2	1	39352285	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	5223483	39352285	209898336	11	91556											
MACF1	23499	broad.mit.edu	37	chr1	39750085	39750085	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaagaattgaggaattAtataaattactagaggtaag	10	1	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39750085	G	G	39750085	2	3	90	1	0	0	0	0	0	0	0	1	9232	446	16	5		5	MACF1	1	39750085	Silent	SNP	A	TCGA-17-Z061-01A-01W-0747-08	397800	39750085	209500536	12	91557											
RIMS3	9783	broad.mit.edu	37	chr1	41101697	41101697	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtctccgtgctccggcGgatgttgctgcgcagcttct	13	14	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41101697	A	A	41101697	3	1	90	1	0	0	0	0	1	0	0	0	13480	1116	39	4	696	4	RIMS3	1	41101697	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1351612	41101697	208148924	13	91558											
MPL	4352	broad.mit.edu	37	chr1	43812045	43812045	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaggccatcgttcttgTaggatgggaagccttgggat	14	9	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43812045	C	C	43812045	1	2	90	0	1	0	0	0	0	0	0	0	9824	1653	57	5		5	MPL	1	43812045	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2710348	43812045	205438576	14	91559											
ZYG11B	79699	broad.mit.edu	37	chr1	53262332	53262332	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttagtctcacctttggagtGaggtacagtgaatgatatta	10	5	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53262332	A	A	53262332	1	1	90	0	1	0	0	0	0	0	0	0	18382	1305	45	4		4	ZYG11B	1	53262332	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	9450287	53262332	195988289	15	91560											
UBE2U	148581	broad.mit.edu	37	chr1	64680450	64680450	+	Intron	DEL	A	-	-													ttggtttgtcgttttgctctAaaaaaagtttacttctgaaa							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64680450	-	-	64680450	6	5	90	0	1	1	0	1	0	0	0	0	17000	377	13	0		0	UBE2U	1	64680450	Intron	DEL	A	TCGA-17-Z061-01A-01W-0747-08	11418118	64680450	184570171	16	91561											
PTGER3	5733	broad.mit.edu	37	chr1	71477837	71477837	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagagatgcctaaattcaCagtaaggtttagcgatattt	9	7	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71477837	T	T	71477837	1	4	90	0	1	0	0	0	0	0	0	0	12850	493	17	4		4	PTGER3	1	71477837	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	6797387	71477837	177772784	17	91562											
C1orf173	127254	broad.mit.edu	37	chr1	75036623	75036623	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccctcctccgtctttcccAgcccctttcctgacaggctt	6	20	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75036623	T	T	75036623	1	4	90	0	1	0	0	0	0	0	0	0	2034	203	7	5		5	C1orf173	1	75036623	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3558786	75036623	174213998	18	91563											
COL24A1	255631	broad.mit.edu	37	chr1	86196532	86196532	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaatggtaaaattactatTattagttgaaaacctggact	6	4	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86196532	C	C	86196532	1	2	90	0	1	0	0	0	0	0	0	0	3715	1769	61	5		5	COL24A1	1	86196532	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	11159909	86196532	163054089	19	91564											
ZNF644	84146	broad.mit.edu	37	chr1	91405243	91405243	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaatatcagaagtgacCatagggcattttaccactgc	10	9	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91405243	G	G	91405243	3	3	90	1	0	0	0	0	1	0	0	0	18187	594	21	4	2331	4	ZNF644	1	91405243	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5208711	91405243	157845378	20	91565											
BRDT	676	broad.mit.edu	37	chr1	92459700	92459700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgttcatcagaccacaCcttcacatgtaatgccacca	4	16	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92459700	A	A	92459700	3	1	90	1	0	0	0	0	1	0	0	0	1517	507	18	3	2230	3	BRDT	1	92459700	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1054457	92459700	156790921	21	91566											
CHIA	27159	broad.mit.edu	37	chr1	111857701	111857701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggggataacagaataaaGggaatgttaagataccatgg	14	3	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111857701	T	T	111857701	1	4	90	0	1	0	0	0	0	0	0	0	3373	1015	35	2		2	CHIA	1	111857701	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	19398001	111857701	137392920	22	91567											
PTGFRN	5738	broad.mit.edu	37	chr1	117509848	117509848	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtctcagacgcagggcTgtaccgctgcatggtgacag	14	11	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117509848	G	G	117509848	3	3	90	1	0	0	0	0	1	0	0	0	12856	1580	55	5	1977	5	PTGFRN	1	117509848	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5652147	117509848	131740773	23	91568											
NBPF9	400818	broad.mit.edu	37	chr1	145075133	145075133	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcgatctgtatctaagaGaaataaccctgaaaagaaga	8	8	2	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145075133	T	T	145075133	1	4	90	0	1	0	0	0	0	0	0	0	10294	957	33	3		3	NBPF9	1	145075133	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	27565285	145075133	104175488	24	91569											
GBA	2629	broad.mit.edu	37	chr1	155206036	155206036	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagactggggtggcttacCgtgatgatgctgtggctgta	18	6	0	3	rs138498426		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155206036	T	T	155206036	2	4	90	1	0	0	0	0	0	0	0	1	6328	666	23	4		4	GBA	1	155206036	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	10130903	155206036	94044585	25	91570											
SPTA1	6708	broad.mit.edu	37	chr1	158607871	158607871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaagaactggaacaagGcataggcctctttcaatttt	9	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158607871	T	T	158607871	3	4	90	1	0	0	0	0	1	0	0	0	15234	1203	42	3	2186	3	SPTA1	1	158607871	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3401835	158607871	90642750	26	91571											
SPTA1	6708	broad.mit.edu	37	chr1	158652984	158652984	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaatatcacagctctcttCaccccaagaaacacgaagat	4	12	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158652984	A	A	158652984	1	1	90	0	1	0	0	0	0	0	0	0	15234	841	29	3		3	SPTA1	1	158652984	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	45113	158652984	90597637	27	91572											
ARHGAP30	257106	broad.mit.edu	37	chr1	161021035	161021035	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccttcctagggtggatcttCcagcatcagagcttcagcct	9	14	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161021035	T	T	161021035	1	4	90	0	1	0	0	0	0	0	0	0	881	870	30	4		4	ARHGAP30	1	161021035	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2368051	161021035	88229586	28	91573											
FCGR2A	2212	broad.mit.edu	37	chr1	161476251	161476251	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccattcagtggttccacaaTgggaatctcattcccaccca	6	14	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161476251	C	C	161476251	2	2	90	1	0	0	0	0	0	0	0	1	5838	1461	51	5		5	FCGR2A	1	161476251	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	455216	161476251	87774370	29	91574											
DDR2	4921	broad.mit.edu	37	chr1	162741929	162741929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcaacacatactcagtGcctgccgtcaccatggacct	10	14	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162741929	T	T	162741929	2	4	90	1	0	0	0	0	0	0	0	1	4370	1306	46	3		3	DDR2	1	162741929	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1265678	162741929	86508692	30	91575											
NUF2	83540	broad.mit.edu	37	chr1	163315660	163315660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatataacagcttactataGttccttgtattttgctttca	4	7	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163315660	T	T	163315660	1	4	90	0	1	0	0	0	0	0	0	0	10842	1044	36	3		3	NUF2	1	163315660	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	573731	163315660	85934961	31	91576											
FMO1	2326	broad.mit.edu	37	chr1	171254526	171254526	+	Frame_Shift_Del	DEL	G	-	-													cttgactggcccaggaaaatGggaaggagccagaaatgcca							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171254526	-	-	171254526	7	5	90	1	0	1	0	1	0	0	0	0	6012	1357	47	0	1472	0	FMO1	1	171254526	Frame_Shift_Del	DEL	G	TCGA-17-Z061-01A-01W-0747-08	7938866	171254526	77996095	32	91577											
FASLG	356	broad.mit.edu	37	chr1	172628388	172628388	+	Frame_Shift_Del	DEL	A	-	-													tccccagatctactgggtggAcagcagtgccagctctccct							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	172628388	-	-	172628388	7	5	90	1	0	1	0	1	0	0	0	0	5739	275	10	0	49	0	FASLG	1	172628388	Frame_Shift_Del	DEL	A	TCGA-17-Z061-01A-01W-0747-08	1373862	172628388	76622233	33	91578											
RABGAP1L	9910	broad.mit.edu	37	chr1	174725885	174725885	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagtacattggaggtgagTaggacaatagcagtcttttc	13	5	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174725885	A	A	174725885	1	1	90	0	1	0	0	0	0	0	0	0	13073	1653	57	5		5	RABGAP1L	1	174725885	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2097497	174725885	74524736	34	91579											
TNR	7143	broad.mit.edu	37	chr1	175304753	175304753	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttagcttctcaacaaacacAgggtttctgataatctcaga	7	9	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175304753	G	G	175304753	1	3	90	0	1	0	0	0	0	0	0	0	16461	203	7	5		5	TNR	1	175304753	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	578868	175304753	73945868	35	91580											
RFWD2	64326	broad.mit.edu	37	chr1	176175636	176175636	+	Intron	DEL	C	-	-													caagccacccccacaccagaCcccccgcccccaagcctaag							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176175636	-	-	176175636	6	5	90	0	1	1	0	1	0	0	0	0	13368	522	18	0		0	RFWD2	1	176175636	Intron	DEL	C	TCGA-17-Z061-01A-01W-0747-08	870883	176175636	73074985	36	91581											
SOAT1	6646	broad.mit.edu	37	chr1	179314114	179314114	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttctatgtgtactacatCtttgaaaggctttgtgcccc	7	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179314114	G	G	179314114	3	3	90	1	0	0	0	0	1	0	0	0	15024	903	32	4	1058	4	SOAT1	1	179314114	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3138478	179314114	69936507	37	91582											
C1orf125	126859	broad.mit.edu	37	chr1	179523438	179523438	+	Intron	DEL	T	-	-													agtaatttgtccaaatgttaTagtgattgtgttatggctgt							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179523438	-	-	179523438	6	5	90	0	1	1	0	1	0	0	0	0	2013	1421	49	0		0	C1orf125	1	179523438	Intron	DEL	T	TCGA-17-Z061-01A-01W-0747-08	209324	179523438	69727183	38	91583											
FAM129A	116496	broad.mit.edu	37	chr1	184863350	184863350	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccaatggtggcttaaagaaGatgaatacaattaactatca	8	6	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184863350	A	A	184863350	1	1	90	0	1	0	0	0	0	0	0	0	5482	957	33	4		4	FAM129A	1	184863350	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5339912	184863350	64387271	39	91584											
CRB1	23418	broad.mit.edu	37	chr1	197237472	197237472	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acccgctcctctctgagacaGacagggatcaggagccggac	12	14	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197237472	T	T	197237472	1	4	90	0	1	0	0	0	0	0	0	0	3880	957	33	3		3	CRB1	1	197237472	5'UTR	SNP	G	TCGA-17-Z061-01A-01W-0747-08	12374122	197237472	52013149	40	91585											
PTPRC	5788	broad.mit.edu	37	chr1	198717268	198717268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catataggagctggaggacaCagcacattggaaatcaagaa	11	7	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198717268	A	A	198717268	3	1	90	1	0	0	0	0	1	0	0	0	12905	479	17	3	2985	3	PTPRC	1	198717268	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1479796	198717268	50533353	41	91586											
MFSD4	148808	broad.mit.edu	37	chr1	205568346	205568346	+	Frame_Shift_Del	DEL	T	-	-													ccttctatatcttgctcctgTttttccacaggatgcaccct							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	205568346	-	-	205568346	7	5	90	1	0	1	0	1	0	0	0	0	9626	1725	60	0	1490	0	MFSD4	1	205568346	Frame_Shift_Del	DEL	T	TCGA-17-Z061-01A-01W-0747-08	6851078	205568346	43682275	42	91587											
TRAF5	7188	broad.mit.edu	37	chr1	211527677	211527677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggctagagcatggctggAgccctggggctggtcttgga	18	9	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211527677	G	G	211527677	1	3	90	0	1	0	0	0	0	0	0	0	16568	319	11	5		5	TRAF5	1	211527677	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	5959331	211527677	37722944	43	91588											
USH2A	7399	broad.mit.edu	37	chr1	215807694	215807694	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacacttagtgaaacataacTtacatctaattccttgttac	3	10	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215807694	A	A	215807694	1	1	90	0	1	0	0	0	0	0	0	0	17162	1624	56	5		5	USH2A	1	215807694	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	4280017	215807694	33442927	44	91589											
USH2A	7399	broad.mit.edu	37	chr1	216074375	216074375	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatgttaaacatggtccaTttaatttaacattttcattc	3	7	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216074375	G	G	216074375	1	3	90	0	1	0	0	0	0	0	0	0	17162	1508	52	5		5	USH2A	1	216074375	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	266681	216074375	33176246	45	91590											
SPATA17	128153	broad.mit.edu	37	chr1	217947893	217947893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcaggtactagtttgctGtataagaattctgtcattaa	8	5	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217947893	T	T	217947893	1	4	90	0	1	0	0	0	0	0	0	0	15118	1392	48	3		3	SPATA17	1	217947893	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1873518	217947893	31302728	46	91591											
RYR2	6262	broad.mit.edu	37	chr1	237753195	237753195	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccatctgtggcttacaagAgggctatgaaccatttgccg	10	11	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237753195	T	T	237753195	3	4	90	1	0	0	0	0	1	0	0	0	13880	304	11	5	3819	5	RYR2	1	237753195	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	19805302	237753195	11497426	47	91592											
WDR64	128025	broad.mit.edu	37	chr1	241953712	241953712	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggagttgctgtggtttcTatagaggaatatttgggaaa	14	2	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241953712	C	C	241953712	1	2	90	0	1	0	0	0	0	0	0	0	17442	1537	53	5		5	WDR64	1	241953712	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	4200517	241953712	7296909	48	91593											
PLD5	200150	broad.mit.edu	37	chr1	242508961	242508961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcaaccttgatatcaaCactgacctaaagcccacagg	6	13	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242508961	A	A	242508961	1	1	90	0	1	0	0	0	0	0	0	0	12144	493	17	3		3	PLD5	1	242508961	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	555249	242508961	6741660	49	91594											
TFB2M	64216	broad.mit.edu	37	chr1	246707918	246707918	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataggtgttaagttcttggtAaataaattttgacgaggaat	10	2	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246707918	G	G	246707918	2	3	90	1	0	0	0	0	0	0	0	1	15917	359	13	5		5	TFB2M	1	246707918	Silent	SNP	A	TCGA-17-Z061-01A-01W-0747-08	4198957	246707918	2542703	50	91595											
NLRP3	114548	broad.mit.edu	37	chr1	247587297	247587297	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagccagcaggagagggaGcaggagcttctggccatcgg	18	10	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247587297	A	A	247587297	2	1	90	1	0	0	0	0	0	0	0	1	10573	962	34	4		4	NLRP3	1	247587297	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	879379	247587297	1663324	51	91596											
OR2L13	284521	broad.mit.edu	37	chr1	248247734	248247734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaggaagtacatgggcGtgtggagccggccggtcccg	18	10	1	0	rs147146388	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247734	T	T	248247734	1	4	90	0	1	0	0	0	0	0	0	0	11100	1160	40	3		3	OR2L13	1	248247734	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	660437	248247734	1002887	52	91597											
OR2L13	284521	broad.mit.edu	37	chr1	248247881	248247881	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagaataaagtctggggtAgtatttctcatctccataat	9	6	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248247881	C	C	248247881	1	2	90	0	1	0	0	0	0	0	0	0	11100	435	15	5		5	OR2L13	1	248247881	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	147	248247881	1002740	53	91598											
OR2T33	391195	broad.mit.edu	37	chr1	248436163	248436163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacattagatcatcttgaCctgtgggcctcattttgctg	9	9	3	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436163	A	A	248436163	3	1	90	1	0	0	0	0	1	0	0	0	11118	506	18	3	11	3	OR2T33	1	248436163	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	188282	248436163	814458	54	91599											
OR2T29	343563	broad.mit.edu	37	chr1	248722841	248722841	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttggagtcagtgtaacgcGtccctttgtaatgagtgttt	11	6	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248722841	T	T	248722841	1	4	90	0	1	0	0	0	0	0	0	0	11116	1160	40	3		3	OR2T29	1	248722841	5'Flank	SNP	G	TCGA-17-Z061-01A-01W-0747-08	286678	248722841	527780	55	91600											
CRIM1	51232	broad.mit.edu	37	chr2	36771536	36771536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaatgtatgtcccagaaCcaaccaatatacccattgag	6	10	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36771536	A	A	36771536	3	1	90	1	0	0	0	0	1	0	0	0	3905	507	18	3	2699	3	CRIM1	2	36771536	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08		36771536	206427837	56	91601											
EIF2AK2	5610	broad.mit.edu	37	chr2	37366673	37366673	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaggaatcattttgctaAatcactggctgtcttggcat	10	7	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37366673	C	C	37366673	1	2	90	0	1	0	0	0	0	0	0	0	5037	29	1	5		5	EIF2AK2	2	37366673	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	595137	37366673	205832700	57	91602											
VRK2	7444	broad.mit.edu	37	chr2	58313309	58313309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttttgttaattatagtgGtaacagtttgaggccattag	9	3	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58313309	T	T	58313309	1	4	90	0	1	0	0	0	0	0	0	0	17347	1276	44	3		3	VRK2	2	58313309	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	20946636	58313309	184886064	58	91603											
SMYD5	10322	broad.mit.edu	37	chr2	73446058	73446058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtagaacggcccctggtgGctgcacagtttctctggaat	12	11	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73446058	T	T	73446058	3	4	90	1	0	0	0	0	1	0	0	0	14939	1203	42	3	172	3	SMYD5	2	73446058	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	15132749	73446058	169753315	59	91604											
HK2	3099	broad.mit.edu	37	chr2	75114865	75114865	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaattagcatgcaaagacaCcagggatcctgcccaagtga	10	10	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75114865	G	G	75114865	1	3	90	0	1	0	0	0	0	0	0	0	7258	522	18	4		4	HK2	2	75114865	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1668807	75114865	168084508	60	91605											
CTNNA2	1496	broad.mit.edu	37	chr2	80390011	80390011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgaagtcatgttatccCtagtcctttcgtacctgcta	7	11	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80390011	T	T	80390011	1	4	90	0	1	0	0	0	0	0	0	0	4047	696	24	4		4	CTNNA2	2	80390011	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5275146	80390011	162809362	61	91606											
NCAPH	23397	broad.mit.edu	37	chr2	97007619	97007619	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcacctcgcttattggccTccccctccagcaggtgaggt	9	16	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97007619	C	C	97007619	3	2	90	1	0	0	0	0	1	0	0	0	10304	1551	54	5	265	5	NCAPH	2	97007619	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	16617608	97007619	146191754	62	91607											
AFF3	3899	broad.mit.edu	37	chr2	100625458	100625458	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaactgtaaagcccaatgtaAcacttgtgtgagtgcagaag	10	7	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100625458	T	T	100625458	1	4	90	0	1	0	0	0	0	0	0	0	358	58	2	5		5	AFF3	2	100625458	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3617839	100625458	142573915	63	91608											
POLR1B	84172	broad.mit.edu	37	chr2	113309471	113309471	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtaatggaagagggttgTtcgacacaaaaacaggtcct	11	6	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113309471	C	C	113309471	2	2	90	1	0	0	0	0	0	0	0	1	12305	1731	60	5		5	POLR1B	2	113309471	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	12684013	113309471	129889902	64	91609											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671821	125671821	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcagaaatgaaattgacTtgcaaaacacagtgagcgag	9	8	1	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125671821	A	A	125671821	3	1	90	1	0	0	0	0	1	0	0	0	3682	1606	56	5	3971	5	CNTNAP5	2	125671821	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	12362350	125671821	117527552	65	91610											
UGGT1	56886	broad.mit.edu	37	chr2	128932405	128932405	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcagacttaggaagggacGctctgaagatatttatagaa	10	7	2	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128932405	C	C	128932405	3	2	90	1	0	0	0	0	1	0	0	0	17067	1087	38	4	3634	4	UGGT1	2	128932405	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3260584	128932405	114266968	66	91611											
PLEKHB2	55041	broad.mit.edu	37	chr2	131947895	131947895	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtaaccagatatctactCtatttctgtacttcattgaa	4	10	4	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131947895	T	T	131947895	1	4	90	0	1	0	0	0	0	0	0	0	12160	928	32	4		4	PLEKHB2	2	131947895	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3015490	131947895	111251478	67	91612											
ACMSD	130013	broad.mit.edu	37	chr2	135619409	135619409	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggggtccagggagaggactGagagggacgcagggagggag	24	5	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135619409	T	T	135619409	1	4	90	0	1	0	0	0	0	0	0	0	144	1305	45	3		3	ACMSD	2	135619409	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3671514	135619409	107579964	68	91613											
THSD7B	80731	broad.mit.edu	37	chr2	137814684	137814684	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gattcaaatgagcgagtcacCtttaaacatcaaagttacaa	6	8	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137814684	G	G	137814684	2	3	90	1	0	0	0	0	0	0	0	1	16003	668	24	4		4	THSD7B	2	137814684	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2195275	137814684	105384689	69	91614											
LRP1B	53353	broad.mit.edu	37	chr2	141113972	141113972	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacagcgacagaaaacagaTgtttttatttgattacaata	6	5	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141113972	A	A	141113972	2	1	90	1	0	0	0	0	0	0	0	1	9042	1451	51	5		5	LRP1B	2	141113972	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3299288	141113972	102085401	70	91615											
LRP1B	53353	broad.mit.edu	37	chr2	141298347	141298347	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatttgttaccattttggtTatcactaactagcacatggt	6	8	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141298347	A	A	141298347	1	1	90	0	1	0	0	0	0	0	0	0	9042	1769	61	5		5	LRP1B	2	141298347	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	184375	141298347	101901026	71	91616											
RIF1	55183	broad.mit.edu	37	chr2	152300042	152300042	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttataattttttgttcaGgttctttctcagtttggaat	6	4	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152300042	T	T	152300042	5	4	90	1	0	0	0	0	0	0	1	0	13468	1014	35	2	1871	2	RIF1	2	152300042	Splice_Site	SNP	G	TCGA-17-Z061-01A-01W-0747-08	11001695	152300042	90899331	72	91617											
NEB	4703	broad.mit.edu	37	chr2	152374947	152374947	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtactggtactgaggggaaGgcggcaaaaaaggcacattg	15	6	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152374947	C	C	152374947	1	2	90	0	1	0	0	0	0	0	0	0	10397	1015	35	4		4	NEB	2	152374947	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	74905	152374947	90824426	73	91618											
GALNT13	114805	broad.mit.edu	37	chr2	155265450	155265450	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttgatgacttaaataacTgtctgatttatgttttatcc	6	5	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155265450	A	A	155265450	1	1	90	0	1	0	0	0	0	0	0	0	6273	1595	55	5		5	GALNT13	2	155265450	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2890503	155265450	87933923	74	91619											
PKP4	8502	broad.mit.edu	37	chr2	159490910	159490910	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattatactatcattatactAtcattaattccatatatatt	0	6	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159490910	G	G	159490910	1	3	90	0	1	0	0	0	0	0	0	0	12082	464	16	5		5	PKP4	2	159490910	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	4225460	159490910	83708463	75	91620											
SLC4A10	57282	broad.mit.edu	37	chr2	162804157	162804157	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccagatgttctattttggTctgtgatcctgttcttttcc	7	9	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162804157	A	A	162804157	3	1	90	1	0	0	0	0	1	0	0	0	14765	1667	58	5	2336	5	SLC4A10	2	162804157	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3313247	162804157	80395216	76	91621											
XIRP2	129446	broad.mit.edu	37	chr2	168106972	168106972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagcggaagatatgcttGtgtcctatgaaaatataatt	8	6	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168106972	T	T	168106972	3	4	90	1	0	0	0	0	1	0	0	0	17557	1377	48	3	9100	3	XIRP2	2	168106972	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5302815	168106972	75092401	77	91622											
PPIG	9360	broad.mit.edu	37	chr2	170465294	170465294	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttattatctgatgatttAaaacatcccatttttgggcc	5	7	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170465294	G	G	170465294	1	3	90	0	1	0	0	0	0	0	0	0	12425	377	13	5		5	PPIG	2	170465294	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	2358322	170465294	72734079	78	91623											
GORASP2	26003	broad.mit.edu	37	chr2	171822507	171822507	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaggcagacgctgcctcctCactcactgtggatgtgacgc	11	13	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171822507	T	T	171822507	3	4	90	1	0	0	0	0	1	0	0	0	6640	838	29	4	1264	4	GORASP2	2	171822507	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1357213	171822507	71376866	79	91624											
TTN	7273	broad.mit.edu	37	chr2	179417150	179417150	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaactgatggatggtttGggttttcccttataaggtaa	11	6	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179417150	T	T	179417150	2	4	90	1	0	0	0	0	0	0	0	1	16861	1335	47	2		2	TTN	2	179417150	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7594643	179417150	63782223	80	91625											
TTN	7273	broad.mit.edu	37	chr2	179444862	179444862	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accacatagtttatgatgggGcttccgccatcaataatggg	10	9	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179444862	C	C	179444862	3	2	90	1	0	0	0	0	1	0	0	0	16861	1194	42	4	41007	4	TTN	2	179444862	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	27712	179444862	63754511	81	91626											
TTN	7273	broad.mit.edu	37	chr2	179464277	179464277	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaccaaaccatgcagtctTtacccaggacattcagtctc	5	13	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179464277	C	C	179464277	1	2	90	0	1	0	0	0	0	0	0	0	16861	1856	64	5		5	TTN	2	179464277	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	19415	179464277	63735096	82	91627											
TTN	7273	broad.mit.edu	37	chr2	179478980	179478980	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaacatagtttgtgatctTagatccaccatcatcgcgtg	7	11	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179478980	G	G	179478980	3	3	90	1	0	0	0	0	1	0	0	0	16861	1763	61	5	58953	5	TTN	2	179478980	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	14703	179478980	63720393	83	91628											
TTN	7273	broad.mit.edu	37	chr2	179594784	179594784	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accccaggcaagaaaatctaGacaagcaagaaagtgaggag	11	8	1	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179594784	C	C	179594784	1	2	90	0	1	0	0	0	0	0	0	0	16861	957	33	4		4	TTN	2	179594784	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	115804	179594784	63604589	84	91629											
TTN	7273	broad.mit.edu	37	chr2	179616022	179616022	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcctcccttaaacgttgcAacttcactttggtctccttg	6	13	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179616022	T	T	179616022	4	4	90	1	0	0	0	0	0	1	0	0	16861	131	5	5	99192	5	TTN	2	179616022	Nonsense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	21238	179616022	63583351	85	91630											
TTN	7273	broad.mit.edu	37	chr2	179659595	179659595	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtttcatggcagaaatccAgttggagaaactagaatgtg	12	5	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179659595	G	G	179659595	1	3	90	0	1	0	0	0	0	0	0	0	16861	203	7	5		5	TTN	2	179659595	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	43573	179659595	63539778	86	91631											
PDE1A	5136	broad.mit.edu	37	chr2	183096052	183096052	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattgaggccataatgcttTataaagcatcaaaacctttt	5	7	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183096052	C	C	183096052	1	2	90	0	1	0	0	0	0	0	0	0	11727	1769	61	5		5	PDE1A	2	183096052	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3436457	183096052	60103321	87	91632											
DNAH7	56171	broad.mit.edu	37	chr2	196860137	196860137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatatggcgtttttctgaGggagatttttggagttttag	12	3	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196860137	T	T	196860137	1	4	90	0	1	0	0	0	0	0	0	0	4646	1015	35	2		2	DNAH7	2	196860137	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	13764085	196860137	46339236	88	91633											
WNT10A	80326	broad.mit.edu	37	chr2	219754906	219754906	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcctgagccatggggtcCcggaacacccagccctgccc	13	17	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219754906	T	T	219754906	3	4	90	1	0	0	0	0	1	0	0	0	17509	623	22	4	587	4	WNT10A	2	219754906	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	22894769	219754906	23444467	89	91634											
FAM124B	79843	broad.mit.edu	37	chr2	225266227	225266227	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggcgaatgctggagagagtCcaggacgcgaaatagcctat	14	8	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225266227	G	G	225266227	3	3	90	1	0	0	0	0	1	0	0	0	5472	855	30	4	1207	4	FAM124B	2	225266227	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5511321	225266227	17933146	90	91635											
SP100	6672	broad.mit.edu	37	chr2	231281052	231281052	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagcaccaggtgagtctTtatctcccttcctttaacct	6	14	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231281052	C	C	231281052	1	2	90	0	1	0	0	0	0	0	0	0	15074	1856	64	5		5	SP100	2	231281052	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6014825	231281052	11918321	91	91636											
COL6A3	1293	broad.mit.edu	37	chr2	238270494	238270495	+	Intron	DNP	CC	AA	AA													cctaccgaaaggaagagaaaCcaaatgttcagatctcaaga							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	238270495	AA	AA	238270494	1	1	90	0	1	0	0	0	0	0	0	0	3733	522	18	3		3	COL6A3	2	238270494	Intron	DNP	CC	TCGA-17-Z061-01A-01W-0747-08	6989442	238270494	4928879	92	91637											
SUMF1	285362	broad.mit.edu	37	chr3	4418225	4418225	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctttgtatctgtattcgTgggctctcccaaatgctcac	9	11	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4418225	C	C	4418225	1	2	90	0	1	0	0	0	0	0	0	0	15503	1711	59	5		5	SUMF1	3	4418225	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08		4418225	193604205	93	91638											
HACL1	26061	broad.mit.edu	37	chr3	15626909	15626920	+	Intron	DEL	TCAAAGATAATT	-	-													tcagtcttatcatattctacTcaaagataatttaaaactgg							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15626920	-	-	15626909	6	5	90	0	1	1	0	1	0	0	0	0	7007	1566	54	0		0	HACL1	3	15626909	Intron	DEL	TCAAAGATAATT	TCGA-17-Z061-01A-01W-0747-08	11208684	15626909	182395521	94	91639											
DAZL	1618	broad.mit.edu	37	chr3	16630281	16630281	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgattactactatagatCtgaaagttgtcaaaaactta	5	6	3	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16630281	G	G	16630281	1	3	90	0	1	0	0	0	0	0	0	0	4279	928	32	4		4	DAZL	3	16630281	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1003372	16630281	181392149	95	91640											
MYRIP	25924	broad.mit.edu	37	chr3	40204373	40204373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctacaggtacaggtactgCcagggtcccccagatgcatt	10	13	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40204373	A	A	40204373	1	1	90	0	1	0	0	0	0	0	0	0	10194	754	26	3		3	MYRIP	3	40204373	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	23574092	40204373	157818057	96	91641											
ROBO1	6091	broad.mit.edu	37	chr3	78649341	78649341	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaatatttcttcgacctacAtttgcttgttctctttgtct	5	10	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78649341	G	G	78649341	2	3	90	1	0	0	0	0	0	0	0	1	13624	214	8	5		5	ROBO1	3	78649341	Silent	SNP	A	TCGA-17-Z061-01A-01W-0747-08	38444968	78649341	119373089	97	91642											
EPHA3	2042	broad.mit.edu	37	chr3	89462129	89462129	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaaatttttcaacacaGtccaatgtcactgccagttt	4	10	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89462129	C	C	89462129	1	2	90	0	1	0	0	0	0	0	0	0	5210	1044	36	4		4	EPHA3	3	89462129	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	10812788	89462129	108560301	98	91643											
CBLB	868	broad.mit.edu	37	chr3	105495227	105495227	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatccacagctataaaaatGatttttacttacttgtctcc	4	9	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105495227	A	A	105495227	1	1	90	0	1	0	0	0	0	0	0	0	2727	1305	45	4		4	CBLB	3	105495227	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	16033098	105495227	92527203	99	91644											
MORC1	27136	broad.mit.edu	37	chr3	108751868	108751870	+	Intron	DEL	TTA	-	-													ttcaagaccccaccaacaagTtattattattattatctcag					rs34222099		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108751870	-	-	108751868	6	5	90	0	1	1	0	1	0	0	0	0	9795	1740	60	0		0	MORC1	3	108751868	Intron	DEL	TTA	TCGA-17-Z061-01A-01W-0747-08	3256641	108751868	89270562	100	91645											
SIDT1	54847	broad.mit.edu	37	chr3	113326986	113326991	+	In_Frame_Del	DEL	CTTCCT	-	-													ctgggccacgtgcttctgggCttcctcttcctgctgatagt							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113326991	-	-	113326986	7	5	90	1	0	1	0	1	0	0	0	0	14415	784	28	0	1586	0	SIDT1	3	113326986	In_Frame_Del	DEL	CTTCCT	TCGA-17-Z061-01A-01W-0747-08	4575118	113326986	84695444	101	91646			1	73		3	3	421	N	CTTCCT_A_-	1.84357e-05
SIDT1	54847	broad.mit.edu	37	chr3	113327317	113327318	+	In_Frame_Ins	INS	-	TGA	TGA													ctacgctatgggcattgcatINStgatgatggaaggggtgctc							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGA	113327318	TGA	TGA	113327317	7	5	90	1	0	1	1	0	0	0	0	0	14415	1490	52	0	1720	0	SIDT1	3	113327317	In_Frame_Ins	INS	-	TCGA-17-Z061-01A-01W-0747-08	331	113327317	84695113	102	91647			1	73		3	3	421	N	CTTCCT_A_-	1.84357e-05
SIDT1	54847	broad.mit.edu	37	chr3	113327406	113327406	+	Intron	DEL	A	-	-													aattagaacttatatctactAtacagatttgaatcgtcagt							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113327406	-	-	113327406	6	5	90	0	1	1	0	1	0	0	0	0	14415	464	16	0		0	SIDT1	3	113327406	Intron	DEL	A	TCGA-17-Z061-01A-01W-0747-08	89	113327406	84695024	103	91648			1	73		3	3	421	N	CTTCCT_A_-	1.84357e-05
ZNF148	7707	broad.mit.edu	37	chr3	125032482	125032482	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagtttgtcgtcaatgttCatgcttaagtataactgcct	7	9	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125032482	T	T	125032482	3	4	90	1	0	0	0	0	1	0	0	0	17860	826	29	4	2405	4	ZNF148	3	125032482	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	11705076	125032482	72989948	104	91649											
PLSCR2	57047	broad.mit.edu	37	chr3	146166892	146166892	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaacattttataaaaccttTacactttaaatggtaatctt	3	6	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146166892	C	C	146166892	1	2	90	0	1	0	0	0	0	0	0	0	12205	1769	61	5		5	PLSCR2	3	146166892	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	21134410	146166892	51855538	105	91650											
PLSCR2	57047	broad.mit.edu	37	chr3	146171851	146171851	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	accactaatttttagtacatCctctcttttctgatttttaa	2	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146171851	G	G	146171851	3	3	90	1	0	0	0	0	1	0	0	0	12205	855	30	4	265	4	PLSCR2	3	146171851	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	4959	146171851	51850579	106	91651											
SI	6476	broad.mit.edu	37	chr3	164748395	164748395	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccaaatgattatctacttGaatttagtttatatgctgca	5	6	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164748395	T	T	164748395	1	4	90	0	1	0	0	0	0	0	0	0	14410	1305	45	3		3	SI	3	164748395	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	18576544	164748395	33274035	107	91652											
PLD1	5337	broad.mit.edu	37	chr3	171323014	171323014	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataccctgtaccaataataTgcagaaataacaatatgctt	4	8	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171323014	C	C	171323014	1	2	90	0	1	0	0	0	0	0	0	0	12140	1479	51	5		5	PLD1	3	171323014	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6574619	171323014	26699416	108	91653											
PSMD2	5708	broad.mit.edu	37	chr3	184025155	184025155	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatcatcagctgagatatgGggagcctacactccggaggg	15	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184025155	A	A	184025155	3	1	90	1	0	0	0	0	1	0	0	0	12804	1232	43	4	2111	4	PSMD2	3	184025155	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	12702141	184025155	13997275	109	91654											
ZNF732	654254	broad.mit.edu	37	chr4	283982	283982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctatagttagggttgtgAaacctcagtggagtcaaaga	12	6	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	283982	G	G	283982	1	3	90	0	1	0	0	0	0	0	0	0	18252	261	9	5		5	ZNF732	4	283982	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08		283982	190870294	110	91655											
PIGG	54872	broad.mit.edu	37	chr4	493113	493113	+	5'UTR	DEL	A	-	-													gtcggttccgcatccagcctAgcgtgtccacgatgcggctg							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	493113	-	-	493113	6	5	90	0	1	1	0	1	0	0	0	0	11983	435	15	0		0	PIGG	4	493113	5'UTR	DEL	A	TCGA-17-Z061-01A-01W-0747-08	209131	493113	190661163	111	91656											
EVC2	132884	broad.mit.edu	37	chr4	5576458	5576458	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctccatgttttccaacAagtcttctagcacgacactg	6	14	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5576458	C	C	5576458	3	2	90	1	0	0	0	0	1	0	0	0	5328	131	5	5	628	5	EVC2	4	5576458	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	5083345	5576458	185577818	112	91657											
N4BP2	55728	broad.mit.edu	37	chr4	40115283	40115283	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagttttatgaagagtttCtttgtgtttctaaaattgag	8	4	2	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40115283	A	A	40115283	1	1	90	0	1	0	0	0	0	0	0	0	10204	928	32	3		3	N4BP2	4	40115283	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	34538825	40115283	151038993	113	91658											
APBB2	323	broad.mit.edu	37	chr4	40832705	40832705	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtcaatggtaaacaatgTatgcaatgattaaaagaaaa	8	4	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40832705	A	A	40832705	1	1	90	0	1	0	0	0	0	0	0	0	763	1653	57	5		5	APBB2	4	40832705	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	717422	40832705	150321571	114	91659											
SRD5A3	79644	broad.mit.edu	37	chr4	56212692	56212692	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggagccgtcgcgcccCgccgcctgccgagcctttga	15	16	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56212692	T	T	56212692	2	4	90	1	0	0	0	0	0	0	0	1	15258	639	23	4		4	SRD5A3	4	56212692	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	15379987	56212692	134941584	115	91660											
EPHA5	2044	broad.mit.edu	37	chr4	66218787	66218787	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtatctaaagagccattCtccatatactctgtcacgat	5	10	4	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66218787	A	A	66218787	3	1	90	1	0	0	0	0	1	0	0	0	5212	912	32	3	866	3	EPHA5	4	66218787	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	10006095	66218787	124935489	116	91661											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68935632	68935632	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccaacttttctataacttTtttcatgatcttttactgtg	4	8	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68935632	G	G	68935632	1	3	90	0	1	0	0	0	0	0	0	0	16366	1856	64	5		5	TMPRSS11F	4	68935632	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2716845	68935632	122218644	117	91662											
SULT1E1	6783	broad.mit.edu	37	chr4	70709983	70709983	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggaacgaagtatgatgtAtaatcctgtccacaagctcc	8	10	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70709983	G	G	70709983	3	3	90	1	0	0	0	0	1	0	0	0	15498	449	16	5	224	5	SULT1E1	4	70709983	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1774351	70709983	120444293	118	91663											
BMP3	651	broad.mit.edu	37	chr4	81967347	81967347	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccagaaagtgtggtatcaAgcttacagggacaccggaat	12	8	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81967347	G	G	81967347	3	3	90	1	0	0	0	0	1	0	0	0	1467	72	3	5	778	5	BMP3	4	81967347	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	11257364	81967347	109186929	119	91664											
WDFY3	23001	broad.mit.edu	37	chr4	85599265	85599265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggctggagtatgtggcccTtggctaaccaaatgactcag	13	9	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85599265	A	A	85599265	1	1	90	0	1	0	0	0	0	0	0	0	17397	1624	56	5		5	WDFY3	4	85599265	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3631918	85599265	105555011	120	91665											
DMP1	1758	broad.mit.edu	37	chr4	88583611	88583611	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagcatcaggagtgaaagGggaaactccagaatgaacag	14	6	1	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88583611	A	A	88583611	2	1	90	1	0	0	0	0	0	0	0	1	4623	1223	43	4		4	DMP1	4	88583611	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2984346	88583611	102570665	121	91666											
C4orf37	285555	broad.mit.edu	37	chr4	98865208	98865208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatttatttttatcaataCaagaggcactataaataata	3	5	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98865208	A	A	98865208	1	1	90	0	1	0	0	0	0	0	0	0	2290	493	17	3		3	C4orf37	4	98865208	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	10281597	98865208	92289068	122	91667											
TET2	54790	broad.mit.edu	37	chr4	106155487	106155487	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaacttcggggtaagccaaGaaagaaatccaggtgaaagc	12	7	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106155487	C	C	106155487	3	2	90	1	0	0	0	0	1	0	0	0	15892	943	33	4	390	4	TET2	4	106155487	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7290279	106155487	84998789	123	91668											
DKK2	27123	broad.mit.edu	37	chr4	107847035	107847035	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgacacaccatgcaggcCgatgatccttggtggggact	12	13	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107847035	A	A	107847035	2	1	90	1	0	0	0	0	0	0	0	1	4585	639	23	1		1	DKK2	4	107847035	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1691548	107847035	83307241	124	91669											
GAR1	54433	broad.mit.edu	37	chr4	110740363	110740363	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccatgctataaatattgaAcacactaatctttaaaagtg	4	7	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110740363	G	G	110740363	1	3	90	0	1	0	0	0	0	0	0	0	6302	58	2	5		5	GAR1	4	110740363	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	2893328	110740363	80413913	125	91670											
ANK2	287	broad.mit.edu	37	chr4	114266956	114266956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgagttcttacctagcaGtaacaaatgaattttacttt	5	7	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114266956	T	T	114266956	1	4	90	0	1	0	0	0	0	0	0	0	621	1044	36	3		3	ANK2	4	114266956	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3526593	114266956	76887320	126	91671											
KIAA1109	84162	broad.mit.edu	37	chr4	123200955	123200955	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgaaatgtagtattgccAagtcccaagccctctacagt	8	10	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123200955	G	G	123200955	3	3	90	1	0	0	0	0	1	0	0	0	8278	131	5	5	8811	5	KIAA1109	4	123200955	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	8933999	123200955	67953321	127	91672											
FAT4	79633	broad.mit.edu	37	chr4	126412316	126412316	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgggcagattccactggAatcttctcctccagtcggac	10	12	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126412316	G	G	126412316	3	3	90	1	0	0	0	0	1	0	0	0	5749	246	9	5	14405	5	FAT4	4	126412316	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3211361	126412316	64741960	128	91673											
MFSD8	256471	broad.mit.edu	37	chr4	128865085	128865085	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatataggtgaagctaccatTtggccaagactatatgaagc	9	7	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128865085	C	C	128865085	2	2	90	1	0	0	0	0	0	0	0	1	9631	1838	64	5		5	MFSD8	4	128865085	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2452769	128865085	62289191	129	91674											
TBC1D9	23158	broad.mit.edu	37	chr4	141578387	141578387	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgtctaaatacctggaaGaagaatgcatcagaagtcac	8	9	3	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141578387	A	A	141578387	1	1	90	0	1	0	0	0	0	0	0	0	15749	957	33	4		4	TBC1D9	4	141578387	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	12713302	141578387	49575889	130	91675											
GYPE	2996	broad.mit.edu	37	chr4	144797951	144797951	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgatcattccaacaacaAcaagcatcacctcaaaaata	3	11	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144797951	G	G	144797951	3	3	90	1	0	0	0	0	1	0	0	0	6976	43	2	5	46	5	GYPE	4	144797951	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3219564	144797951	46356325	131	91676											
DDX60L	91351	broad.mit.edu	37	chr4	169295016	169295016	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcagcccaaatgttaaccCtttcaaactcactgtaggtc	5	12	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169295016	T	T	169295016	1	4	90	0	1	0	0	0	0	0	0	0	4412	696	24	4		4	DDX60L	4	169295016	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	24497065	169295016	21859260	132	91677											
TARS	6897	broad.mit.edu	37	chr5	33461819	33461819	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaaaagtgggagttaaaCtctggagatggagctttcta	14	4	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33461819	T	T	33461819	2	4	90	1	0	0	0	0	0	0	0	1	15678	564	20	4		4	TARS	5	33461819	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08		33461819	147453441	133	91678											
PRKAA1	5562	broad.mit.edu	37	chr5	40767519	40767519	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttcacataactTttatcatggatactatcaga	3	6	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40767519	G	G	40767519	1	3	90	0	1	0	0	0	0	0	0	0	12599	1856	64	5		5	PRKAA1	5	40767519	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	7305700	40767519	140147741	134	91679											
ISL1	3670	broad.mit.edu	37	chr5	50683244	50683244	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggatcttgggccagggaaGtgccggcctgaagtgacccc	16	12	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50683244	T	T	50683244	1	4	90	0	1	0	0	0	0	0	0	0	7926	1044	36	3		3	ISL1	5	50683244	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	9915725	50683244	130232016	135	91680											
ESM1	11082	broad.mit.edu	37	chr5	54275342	54275342	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgctttatttttgttttAcatggaatttacaatgaaat	5	3	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54275342	G	G	54275342	1	3	90	0	1	0	0	0	0	0	0	0	5294	406	14	5		5	ESM1	5	54275342	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3592098	54275342	126639918	136	91681											
RGNEF	64283	broad.mit.edu	37	chr5	73165730	73165731	+	Intron	INS	-	A	A													cgacagagagaaactgtctcINSaaaaaaaaacagatgtttca					rs143184703	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73165731	A	A	73165730	6	5	90	0	1	1	1	0	0	0	0	0	13391	841	29	0		0	RGNEF	5	73165730	Intron	INS	-	TCGA-17-Z061-01A-01W-0747-08	18890388	73165730	107749530	137	91682											
ACOT12	134526	broad.mit.edu	37	chr5	80655735	80655735	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgaccatcaaatttgctActttccttcattaaattgtt	3	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80655735	G	G	80655735	2	3	90	1	0	0	0	0	0	0	0	1	150	388	14	5		5	ACOT12	5	80655735	Silent	SNP	A	TCGA-17-Z061-01A-01W-0747-08	7490005	80655735	100259525	138	91683											
SSBP2	23635	broad.mit.edu	37	chr5	80762883	80762883	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaatgataaccaagggtcaGactaccacaaaacaaaaaaa	6	8	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80762883	C	C	80762883	1	2	90	0	1	0	0	0	0	0	0	0	15298	957	33	4		4	SSBP2	5	80762883	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	107148	80762883	100152377	139	91684											
FAM81B	153643	broad.mit.edu	37	chr5	94726847	94726847	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactgtgaagatgaaatcagGagaagagtgtgaaatatcag	12	3	2	6			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94726847	T	T	94726847	1	4	90	0	1	0	0	0	0	0	0	0	5682	1189	41	3		3	FAM81B	5	94726847	5'Flank	SNP	G	TCGA-17-Z061-01A-01W-0747-08	13963964	94726847	86188413	140	91685											
LNPEP	4012	broad.mit.edu	37	chr5	96315736	96315736	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctgataacttctgcaatAtagatccctttgtccacacc	5	13	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96315736	G	G	96315736	1	3	90	0	1	0	0	0	0	0	0	0	8938	464	16	5		5	LNPEP	5	96315736	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1588889	96315736	84599524	141	91686											
GIN1	54826	broad.mit.edu	37	chr5	102432207	102432207	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaactattctccttaccTaaagcaataaaaatgtagag	4	7	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102432207	C	C	102432207	1	2	90	0	1	0	0	0	0	0	0	0	6450	1537	53	5		5	GIN1	5	102432207	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6116471	102432207	78483053	142	91687											
PJA2	9867	broad.mit.edu	37	chr5	108698755	108698755	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttaaaggaagaaaaaaaTattattttaaaacataccat	3	3	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108698755	C	C	108698755	1	2	90	0	1	0	0	0	0	0	0	0	12057	1421	49	5		5	PJA2	5	108698755	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6266548	108698755	72216505	143	91688											
KIF20A	10112	broad.mit.edu	37	chr5	137521475	137521475	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaacccaggccttctaactCctgctctaacataatttcct	3	14	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137521475	A	A	137521475	1	1	90	0	1	0	0	0	0	0	0	0	8356	870	30	3		3	KIF20A	5	137521475	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	28822720	137521475	43393785	144	91689											
KDM3B	51780	broad.mit.edu	37	chr5	137708496	137708496	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacccagtccttctccaggGcattcgagtctccattgcac	9	15	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137708496	A	A	137708496	3	1	90	1	0	0	0	0	1	0	0	0	8197	1203	42	4	332	4	KDM3B	5	137708496	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	187021	137708496	43206764	145	91690											
HTR4	3360	broad.mit.edu	37	chr5	147928401	147928401	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagatccgcaaaagcaagAgatacaatgaaataatttgt	8	6	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147928401	T	T	147928401	2	4	90	1	0	0	0	0	0	0	0	1	7519	291	11	5		5	HTR4	5	147928401	Silent	SNP	A	TCGA-17-Z061-01A-01W-0747-08	10219905	147928401	32986859	146	91691											
ADAM19	8728	broad.mit.edu	37	chr5	156915125	156915125	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacgttcgttgctctaaccTgctgtgcgcccccgtattga	9	15	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156915125	C	C	156915125	1	2	90	0	1	0	0	0	0	0	0	0	240	1595	55	5		5	ADAM19	5	156915125	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	8986724	156915125	24000135	147	91692											
MAPK9	5601	broad.mit.edu	37	chr5	179665195	179665195	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggagaattgcttgaacccAggaggcggaggttgcagtga	16	7	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179665195	G	G	179665195	1	3	90	0	1	0	0	0	0	0	0	0	9379	203	7	5		5	MAPK9	5	179665195	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	22750070	179665195	1250065	148	91693											
EDN1	1906	broad.mit.edu	37	chr6	12296272	12296272	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagccctccagagagcgttAtgtgacccacaaccgagcac	9	15	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12296272	T	T	12296272	3	4	90	1	0	0	0	0	1	0	0	0	4956	449	16	5	629	5	EDN1	6	12296272	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08		12296272	158818795	149	91694											
DCDC2	51473	broad.mit.edu	37	chr6	24288992	24288992	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaagcggctaagttttatcTcttggaacttaattgaagcc	9	8	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24288992	C	C	24288992	1	2	90	0	1	0	0	0	0	0	0	0	4318	1566	54	5		5	DCDC2	6	24288992	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	11992720	24288992	146826075	150	91695											
HLA-G	3135	broad.mit.edu	37	chr6	29797632	29797632	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catccccatcatgggtatcgTtgctggcctggttgtccttg	11	12	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29797632	A	A	29797632	3	1	90	1	0	0	0	0	1	0	0	0	7279	1725	60	5	953	5	HLA-G	6	29797632	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5508640	29797632	141317435	151	91696											
FLOT1	10211	broad.mit.edu	37	chr6	30698927	30698927	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagtcagaggtgaagaGcaagtgcccgggaaccagag	15	9	2	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30698927	C	C	30698927	1	2	90	0	1	0	0	0	0	0	0	0	5994	986	34	4		4	FLOT1	6	30698927	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	901295	30698927	140416140	152	91697											
KIF6	221458	broad.mit.edu	37	chr6	39325206	39325206	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaatctaatgacataggaaGatgtttttgatgtaattctt	8	3	2	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39325206	A	A	39325206	1	1	90	0	1	0	0	0	0	0	0	0	8378	957	33	4		4	KIF6	6	39325206	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	8626279	39325206	131789861	153	91698											
C6orf138	442213	broad.mit.edu	37	chr6	47846939	47846939	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactgctccacccaggacacTgcagtgaatccactacagag	8	14	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47846939	A	A	47846939	2	1	90	1	0	0	0	0	0	0	0	1	2355	1567	55	5		5	C6orf138	6	47846939	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	8521733	47846939	123268128	154	91699											
MUT	4594	broad.mit.edu	37	chr6	49415503	49415503	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaattacttcagaacctggTaatttcccaaagaaaaattt	4	8	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49415503	A	A	49415503	1	1	90	0	1	0	0	0	0	0	0	0	10085	1653	57	5		5	MUT	6	49415503	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	1568564	49415503	121699564	155	91700											
TFAP2B	7021	broad.mit.edu	37	chr6	50807960	50807960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtatttgaaccggcagcaCacagacccgagtgacctgca	11	12	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50807960	A	A	50807960	3	1	90	1	0	0	0	0	1	0	0	0	15911	477	17	3	1054	3	TFAP2B	6	50807960	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1392457	50807960	120307107	156	91701											
BAI3	577	broad.mit.edu	37	chr6	69653863	69653863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaaacacatcataagcCttgtaatattgctctttgcc	5	11	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69653863	A	A	69653863	3	1	90	1	0	0	0	0	1	0	0	0	1305	681	24	2	1186	2	BAI3	6	69653863	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	18845903	69653863	101461204	157	91702											
COL12A1	1303	broad.mit.edu	37	chr6	75855808	75855808	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaatgttaaagaaacaaaCatctttcacctctttgggtc	5	11	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75855808	T	T	75855808	1	4	90	0	1	0	0	0	0	0	0	0	3701	493	17	4		4	COL12A1	6	75855808	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	6201945	75855808	95259259	158	91703											
DOPEY1	23033	broad.mit.edu	37	chr6	83842100	83842105	+	Intron	DEL	ACACAA	-	-													tccgccacacacacacacacAcacaaatactgaaaagtaag					rs143426789	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83842105	-	-	83842100	6	5	90	0	1	1	0	1	0	0	0	0	4747	174	6	0		0	DOPEY1	6	83842100	Intron	DEL	ACACAA	TCGA-17-Z061-01A-01W-0747-08	7986292	83842100	87272967	159	91704											
HTR1E	3354	broad.mit.edu	37	chr6	87725323	87725323	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatggatcgctggaagcttGggtacttcctctgtgaggtg	14	8	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87725323	C	C	87725323	3	2	90	1	0	0	0	0	1	0	0	0	7509	1348	47	4	273	4	HTR1E	6	87725323	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3883223	87725323	83389744	160	91705											
PRDM13	59336	broad.mit.edu	37	chr6	100056654	100056654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctggtggacgagtcggGgggctcccctctggagtgga	20	9	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100056654	T	T	100056654	3	4	90	1	0	0	0	0	1	0	0	0	12560	1232	43	2	188	2	PRDM13	6	100056654	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	12331331	100056654	71058413	161	91706											
RTN4IP1	84816	broad.mit.edu	37	chr6	107069328	107069328	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgactacaacaaactctGaaagagtgccttgtttccaa	6	11	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107069328	A	A	107069328	3	1	90	1	0	0	0	0	1	0	0	0	13840	1294	45	4	751	4	RTN4IP1	6	107069328	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7012674	107069328	64045739	162	91707											
PDSS2	57107	broad.mit.edu	37	chr6	107533225	107533225	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataagcatttttgaaatatAaaagaagcttattaaatggc	6	3	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107533225	G	G	107533225	1	3	90	0	1	0	0	0	0	0	0	0	11788	377	13	5		5	PDSS2	6	107533225	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	463897	107533225	63581842	163	91708											
DSE	29940	broad.mit.edu	37	chr6	116756950	116756950	+	Frame_Shift_Del	DEL	T	-	-													aaacaaatacaaagattggaTcaaaggatggagaaatttta							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116756950	-	-	116756950	7	5	90	1	0	1	0	1	0	0	0	0	4814	1435	50	0	1337	0	DSE	6	116756950	Frame_Shift_Del	DEL	T	TCGA-17-Z061-01A-01W-0747-08	9223725	116756950	54358117	164	91709											
PLN	5350	broad.mit.edu	37	chr6	118880214	118880214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttaatatgtctcttgCtgatctgtatcatcgtgatg	7	8	5	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118880214	A	A	118880214	3	1	90	1	0	0	0	0	1	0	0	0	12195	796	28	3	132	3	PLN	6	118880214	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2123264	118880214	52234853	165	91710											
MCM9	254394	broad.mit.edu	37	chr6	119245037	119245037	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggagacgaagacaagcctGagaggcaagtgaatttagag	14	5	0	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119245037	A	A	119245037	3	1	90	1	0	0	0	0	1	0	0	0	9487	1294	45	4	635	4	MCM9	6	119245037	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	364823	119245037	51870030	166	91711											
SMPDL3A	10924	broad.mit.edu	37	chr6	123130282	123130282	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacagaggcgaatctaaaggGagagtccatctggaagctgg	15	7	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123130282	A	A	123130282	3	1	90	1	0	0	0	0	1	0	0	0	14922	1174	41	4	1121	4	SMPDL3A	6	123130282	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3885245	123130282	47984785	167	91712											
C6orf58	352999	broad.mit.edu	37	chr6	127898250	127898250	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaaagtgttgatatgctgTgaggttagcaaatatcatga	11	4	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127898250	A	A	127898250	1	1	90	0	1	0	0	0	0	0	0	0	2391	1711	59	5		5	C6orf58	6	127898250	5'Flank	SNP	T	TCGA-17-Z061-01A-01W-0747-08	4767968	127898250	43216817	168	91713											
EYA4	2070	broad.mit.edu	37	chr6	133827278	133827278	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacccttggactccgcaTggaagaaatgatttttaatc	8	8	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133827278	A	A	133827278	3	1	90	1	0	0	0	0	1	0	0	0	5374	1464	51	5	1276	5	EYA4	6	133827278	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5929028	133827278	37287789	169	91714											
MAP7	9053	broad.mit.edu	37	chr6	136709742	136709742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgaggagtactacttcAattcccactctactattctt	7	10	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136709742	T	T	136709742	1	4	90	0	1	0	0	0	0	0	0	0	9358	145	5	5		5	MAP7	6	136709742	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	2882464	136709742	34405325	170	91715											
SASH1	23328	broad.mit.edu	37	chr6	148789547	148789548	+	Intron	DNP	GT	CA	CA													cagatgggtagaaaaagccaGtggtaaatagcctataacaa							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	148789548	CA	CA	148789547	1	2	90	0	1	0	0	0	0	0	0	0	13960	1044	36	4		4	SASH1	6	148789547	Intron	DNP	GT	TCGA-17-Z061-01A-01W-0747-08	12079805	148789547	22325520	171	91716											
SYNE1	23345	broad.mit.edu	37	chr6	152652224	152652224	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcctgaagcttccccagCacttcactcttttcctgctc	4	16	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152652224	T	T	152652224	2	4	90	1	0	0	0	0	0	0	0	1	15564	697	25	4		4	SYNE1	6	152652224	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3862677	152652224	18462843	172	91717											
VIP	7432	broad.mit.edu	37	chr6	153075271	153075271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcttctgaaaaaagaatGtattattctcgtgtaacttt	6	6	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153075271	T	T	153075271	1	4	90	0	1	0	0	0	0	0	0	0	17294	1392	48	3		3	VIP	6	153075271	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	423047	153075271	18039796	173	91718											
ACTB	60	broad.mit.edu	37	chr7	5569036	5569036	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcccaccatcacgccctggGaaggaaaggacaagaagccc	11	14	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5569036	C	C	5569036	1	2	90	0	1	0	0	0	0	0	0	0	193	1189	41	4		4	ACTB	7	5569036	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08		5569036	153569627	174	91719											
PHF14	9678	broad.mit.edu	37	chr7	11111113	11111113	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccacttcctttgataaaTagcagatatttcctttttaa	3	10	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11111113	C	C	11111113	1	2	90	0	1	0	0	0	0	0	0	0	11920	1421	49	5		5	PHF14	7	11111113	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5542077	11111113	148027550	175	91720											
MPP6	51678	broad.mit.edu	37	chr7	24705860	24705860	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacacatggtgcaatataAtataaattatttaaaaccca	4	6	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24705860	G	G	24705860	1	3	90	0	1	0	0	0	0	0	0	0	9832	116	4	5		5	MPP6	7	24705860	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	13594747	24705860	134432803	176	91721											
PDE1C	5137	broad.mit.edu	37	chr7	31917697	31917697	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgatatcttataaagtagGatttgtaatccacagactca	6	7	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31917697	A	A	31917697	1	1	90	0	1	0	0	0	0	0	0	0	11729	1189	41	4		4	PDE1C	7	31917697	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7211837	31917697	127220966	177	91722											
CCM2	83605	broad.mit.edu	37	chr7	45077868	45077868	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcctggaattgtctcgcCatttaaacgagtattcctaa	8	10	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45077868	T	T	45077868	3	4	90	1	0	0	0	0	1	0	0	0	2938	594	21	4	150	4	CCM2	7	45077868	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	13160171	45077868	114060795	178	91723											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73922622	73922622	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctacctcagctactcgaagGagctttcactgacctgaacc	7	15	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73922622	T	T	73922622	1	4	90	0	1	0	0	0	0	0	0	0	6933	1189	41	3		3	GTF2IRD1	7	73922622	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	28844754	73922622	85216041	179	91724											
GTF2IRD1	9569	broad.mit.edu	37	chr7	74009461	74009462	+	Intron	DNP	AG	GA	GA													aaaaaggtagacccgggcgcAgtggctcatgcctgtaatcc							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	74009462	GA	GA	74009461	1	3	90	0	1	0	0	0	0	0	0	0	6933	203	7	5		5	GTF2IRD1	7	74009461	Intron	DNP	AG	TCGA-17-Z061-01A-01W-0747-08	86839	74009461	85129202	180	91725											
GTF2IRD1	9569	broad.mit.edu	37	chr7	74009477	74009477	+	Intron	DEL	A	-	-													gcgcagtggctcatgcctgtAatcccagcactttgggaggc							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74009477	-	-	74009477	6	5	90	0	1	1	0	1	0	0	0	0	6933	377	13	0		0	GTF2IRD1	7	74009477	Intron	DEL	A	TCGA-17-Z061-01A-01W-0747-08	16	74009477	85129186	181	91726											
HGF	3082	broad.mit.edu	37	chr7	81374365	81374365	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctgatgatcccagcgctGacaaatcttgcctgattctg	9	11	3	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81374365	T	T	81374365	3	4	90	1	0	0	0	0	1	0	0	0	7152	1299	45	3	1553	3	HGF	7	81374365	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7364888	81374365	77764298	182	91727											
HGF	3082	broad.mit.edu	37	chr7	81391958	81391958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactacaacacaaaagacaCatgattataatacatgcatg	5	8	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81391958	A	A	81391958	1	1	90	0	1	0	0	0	0	0	0	0	7152	493	17	3		3	HGF	7	81391958	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	17593	81391958	77746705	183	91728											
EPO	2056	broad.mit.edu	37	chr7	100319219	100319219	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctcctgtccctgctgTcgctccctctgggcctccca	9	19	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100319219	A	A	100319219	3	1	90	1	0	0	0	0	1	0	0	0	5230	1667	58	5	58	5	EPO	7	100319219	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	18927261	100319219	58819444	184	91729											
SRRT	51593	broad.mit.edu	37	chr7	100481932	100481932	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctggggatcaggtagaaGccggttgacaggagccaggg	18	7	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100481932	A	A	100481932	1	1	90	0	1	0	0	0	0	0	0	0	15290	986	34	4		4	SRRT	7	100481932	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	162713	100481932	58656731	185	91730											
SLC26A3	1811	broad.mit.edu	37	chr7	107434477	107434477	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttacccataatcagctgccCtctggtcaccaacaaaggat	6	13	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107434477	T	T	107434477	1	4	90	0	1	0	0	0	0	0	0	0	14632	696	24	4		4	SLC26A3	7	107434477	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	6952545	107434477	51704186	186	91731											
LAMB1	3912	broad.mit.edu	37	chr7	107613538	107613538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaacaaaacgtgaaacAtgtaacggtaggtttctgta	10	6	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107613538	G	G	107613538	1	3	90	0	1	0	0	0	0	0	0	0	8682	232	8	5		5	LAMB1	7	107613538	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	179061	107613538	51525125	187	91732											
KCND2	3751	broad.mit.edu	37	chr7	120178474	120178474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaaagtgagcacatgctGttggacaggtggtgctacct	12	9	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120178474	T	T	120178474	1	4	90	0	1	0	0	0	0	0	0	0	8089	1392	48	3		3	KCND2	7	120178474	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	12564936	120178474	38960189	188	91733											
TSPAN12	23554	broad.mit.edu	37	chr7	120428836	120428836	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatacagagcccagagcagaGtaatggtgagaatcatggcc	12	8	1	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120428836	A	A	120428836	3	1	90	1	0	0	0	0	1	0	0	0	16761	1029	36	4	193	4	TSPAN12	7	120428836	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	250362	120428836	38709827	189	91734											
FLNC	2318	broad.mit.edu	37	chr7	128481178	128481178	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagctgggggacggaaggGtcttgcctgatgctggatcc	19	8	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128481178	A	A	128481178	1	1	90	0	1	0	0	0	0	0	0	0	5993	1276	44	4		4	FLNC	7	128481178	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	8052342	128481178	30657485	190	91735											
DENND2A	27147	broad.mit.edu	37	chr7	140285473	140285473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcagcgaccatgtaaCtcgatgtcctcataagggtt	10	12	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140285473	A	A	140285473	3	1	90	1	0	0	0	0	1	0	0	0	4469	564	20	3	1932	3	DENND2A	7	140285473	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	11804295	140285473	18853190	191	91736											
SSPO	23145	broad.mit.edu	37	chr7	149502581	149502581	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagggggccctggctggcgCagtcgttcccgactctgccc	16	15	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149502581	G	G	149502581	2	3	90	1	0	0	0	0	0	0	0	1	15307	697	25	4		4	SSPO	7	149502581	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	9217108	149502581	9636082	192	91737											
MLL3	58508	broad.mit.edu	37	chr7	151864259	151864259	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtttctgaaccatgcttTgctgttcagtaacatgcttg	9	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151864259	C	C	151864259	3	2	90	1	0	0	0	0	1	0	0	0	9715	1812	63	5	5085	5	MLL3	7	151864259	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2361678	151864259	7274404	193	91738											
FAM167A	83648	broad.mit.edu	37	chr8	11282067	11282067	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggaggcggcaggtgtgttCgattttcagcttgttgatgt	16	5	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11282067	T	T	11282067	3	4	90	1	0	0	0	0	1	0	0	0	5528	893	31	4	188	4	FAM167A	8	11282067	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08		11282067	135081955	194	91739											
TUSC3	7991	broad.mit.edu	37	chr8	15605885	15605885	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttctgtctgtttctagtAatttgcctagtgggattggg	11	5	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15605885	T	T	15605885	2	4	90	1	0	0	0	0	0	0	0	1	16904	376	13	5		5	TUSC3	8	15605885	Silent	SNP	A	TCGA-17-Z061-01A-01W-0747-08	4323818	15605885	130758137	195	91740											
REEP4	80346	broad.mit.edu	37	chr8	21998952	21998952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaggaggtctgagggcGgccatactcacaccaccagg	15	11	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21998952	A	A	21998952	1	1	90	0	1	0	0	0	0	0	0	0	13315	1131	39	4		4	REEP4	8	21998952	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	6393067	21998952	124365070	196	91741											
DOCK5	80005	broad.mit.edu	37	chr8	25265569	25265571	+	In_Frame_Del	DEL	GAG	-	-													ttgaagatctgtcccttagaGaggagaacagcgagaaccgg					rs150764947		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25265571	-	-	25265569	7	5	90	1	0	1	0	1	0	0	0	0	4730	943	33	0	5358	0	DOCK5	8	25265569	In_Frame_Del	DEL	GAG	TCGA-17-Z061-01A-01W-0747-08	3266617	25265569	121098453	197	91742											
TEX15	56154	broad.mit.edu	37	chr8	30699765	30699765	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgttatacagcatttGgcataggaaaaaggaaatgg	10	6	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30699765	A	A	30699765	4	1	90	1	0	0	0	0	0	1	0	0	15901	1357	47	4	1616	4	TEX15	8	30699765	Nonsense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5434196	30699765	115664257	198	91743											
ZMAT4	79698	broad.mit.edu	37	chr8	40532564	40532564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctagagcttaaacatccCcaagagttcattgacagcag	7	11	2	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40532564	T	T	40532564	1	4	90	0	1	0	0	0	0	0	0	0	17820	638	22	4		4	ZMAT4	8	40532564	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	9832799	40532564	105831458	199	91744											
ANK1	286	broad.mit.edu	37	chr8	41615756	41615756	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagcccctgcatcctctgAtgtggcaccctggtgcccac	10	17	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41615756	G	G	41615756	1	3	90	0	1	0	0	0	0	0	0	0	620	348	12	5		5	ANK1	8	41615756	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1083192	41615756	104748266	200	91745											
SLC20A2	6575	broad.mit.edu	37	chr8	42302222	42302222	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacacaaaaaaagcgaacagGagggcgacaccaaaggaaat	10	9	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42302222	A	A	42302222	2	1	90	1	0	0	0	0	0	0	0	1	14552	1161	41	4		4	SLC20A2	8	42302222	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	686466	42302222	104061800	201	91746											
NKAIN3	286183	broad.mit.edu	37	chr8	63494651	63494651	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccctctctccctccctcCttctgtctttccttccttct	1	22	4	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63494651	T	T	63494651	1	4	90	0	1	0	0	0	0	0	0	0	10532	696	24	4		4	NKAIN3	8	63494651	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	21192429	63494651	82869371	202	91747											
KCNB2	9312	broad.mit.edu	37	chr8	73849937	73849938	+	Missense_Mutation	DNP	GG	TT	TT													cttgtcagggaccttccaaaGggctgtcccccaggtttccc							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	73849938	TT	TT	73849937	3	4	90	1	0	0	0	0	1	0	0	0	8083	1000	35	2	2353	2	KCNB2	8	73849937	Missense_Mutation	DNP	GG	TCGA-17-Z061-01A-01W-0747-08	10355286	73849937	72514085	203	91748											
OSR2	116039	broad.mit.edu	37	chr8	99962908	99962908	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccattccaaagaaaaaccCttcaaatgtcaggagtgtgg	8	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99962908	T	T	99962908	2	4	90	1	0	0	0	0	0	0	0	1	11388	668	24	4		4	OSR2	8	99962908	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	26112971	99962908	46401114	204	91749											
VPS13B	157680	broad.mit.edu	37	chr8	100352892	100352892	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcttccttgctaggaggcTgaggaatagttgaagatgat	12	5	1	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100352892	A	A	100352892	1	1	90	0	1	0	0	0	0	0	0	0	17317	1595	55	5		5	VPS13B	8	100352892	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	389984	100352892	46011130	205	91750											
CSMD3	114788	broad.mit.edu	37	chr8	113421176	113421176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcctgagagggaagataaCagagaagattgctgagttgg	15	4	0	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113421176	A	A	113421176	2	1	90	1	0	0	0	0	0	0	0	1	3980	465	17	3		3	CSMD3	8	113421176	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	13068284	113421176	32942846	206	91751											
RAD21	5885	broad.mit.edu	37	chr8	117863084	117863084	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgaaaatacacagtgGctgaagttttctagtcaaaa	7	5	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117863084	A	A	117863084	1	1	90	0	1	0	0	0	0	0	0	0	13089	1218	42	4		4	RAD21	8	117863084	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4441908	117863084	28500938	207	91752											
MRPL13	28998	broad.mit.edu	37	chr8	121437552	121437552	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaagaaacttactgccacTggatccctcaggtgaagctg	9	11	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121437552	A	A	121437552	2	1	90	1	0	0	0	0	0	0	0	1	9872	1567	55	5		5	MRPL13	8	121437552	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3574468	121437552	24926470	208	91753											
ADCY8	114	broad.mit.edu	37	chr8	131826478	131826478	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtgtactccagctgcAgtacatgtgagagaaagagg	15	7	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131826478	C	C	131826478	1	2	90	0	1	0	0	0	0	0	0	0	300	203	7	5		5	ADCY8	8	131826478	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	10388926	131826478	14537544	209	91754											
ADCY8	114	broad.mit.edu	37	chr8	131861961	131861961	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccggaggatgaggggcaAacatttataatcctctgctg	11	8	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131861961	C	C	131861961	3	2	90	1	0	0	0	0	1	0	0	0	300	11	1	5	1492	5	ADCY8	8	131861961	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	35483	131861961	14502061	210	91755											
FAM135B	51059	broad.mit.edu	37	chr8	139160932	139160932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggcctgataaaaactGgagaatacactaattaatca	6	7	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139160932	T	T	139160932	1	4	90	0	1	0	0	0	0	0	0	0	5495	1363	47	2		2	FAM135B	8	139160932	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7298971	139160932	7203090	211	91756											
COL22A1	169044	broad.mit.edu	37	chr8	139767254	139767254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttttcctacgtgagacGtgaccacaacagcacaaccc	7	14	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139767254	T	T	139767254	1	4	90	0	1	0	0	0	0	0	0	0	3713	1160	40	3		3	COL22A1	8	139767254	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	606322	139767254	6596768	212	91757											
DOCK8	81704	broad.mit.edu	37	chr9	441270	441270	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattctctctgatgctcTtctcctctttccaagggagg	7	11	5	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	441270	A	A	441270	1	1	90	0	1	0	0	0	0	0	0	0	4733	1624	56	5		5	DOCK8	9	441270	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08		441270	140772161	213	91758											
CD274	29126	broad.mit.edu	37	chr9	5455961	5455961	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgaacttccaattccctgTtgggtttccacaattacaag	6	10	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5455961	C	C	5455961	1	2	90	0	1	0	0	0	0	0	0	0	3021	1740	60	5		5	CD274	9	5455961	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5014691	5455961	135757470	214	91759											
IFNA10	3446	broad.mit.edu	37	chr9	21206513	21206513	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatcaggatcattgccaTgttgaaccagttttcaatcc	7	10	4	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21206513	C	C	21206513	1	2	90	0	1	0	0	0	0	0	0	0	7602	1479	51	5		5	IFNA10	9	21206513	3'UTR	SNP	T	TCGA-17-Z061-01A-01W-0747-08	15750552	21206513	120006918	215	91760											
FRMPD1	22844	broad.mit.edu	37	chr9	37745306	37745306	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgtggaataaatccaggaGagaagatagcttctatccct	9	7	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37745306	C	C	37745306	3	2	90	1	0	0	0	0	1	0	0	0	6117	943	33	4	3335	4	FRMPD1	9	37745306	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	16538793	37745306	103468125	216	91761											
CNTNAP3	79937	broad.mit.edu	37	chr9	39171256	39171256	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagtctaaaaggaaacagCaatctgttcctctagtgggg	10	8	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39171256	T	T	39171256	1	4	90	0	1	0	0	0	0	0	0	0	3680	725	25	4		4	CNTNAP3	9	39171256	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1425950	39171256	102042175	217	91762											
ZNF658	26149	broad.mit.edu	37	chr9	40774257	40774257	+	Frame_Shift_Del	DEL	G	-	-													tgttttctgatgtactatatGggctgagctctggctaaaat							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40774257	-	-	40774257	7	5	90	1	0	1	0	1	0	0	0	0	18196	1348	47	0	2165	0	ZNF658	9	40774257	Frame_Shift_Del	DEL	G	TCGA-17-Z061-01A-01W-0747-08	1603001	40774257	100439174	218	91763											
FAM75A6	389730	broad.mit.edu	37	chr9	43625067	43625067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcatttgtccaactgccGtcatgagaccctgagcttca	8	14	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43625067	T	T	43625067	3	4	90	1	0	0	0	0	1	0	0	0	5674	1145	40	3	415	3	FAM75A6	9	43625067	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2850810	43625067	97588364	219	91764											
PGM5	5239	broad.mit.edu	37	chr9	71098888	71098888	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagtttgctgtggggaGccatgtctacagcgtggcga	15	10	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71098888	A	A	71098888	3	1	90	1	0	0	0	0	1	0	0	0	11896	971	34	4	1437	4	PGM5	9	71098888	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	27473821	71098888	70114543	220	91765											
SHC3	53358	broad.mit.edu	37	chr9	91656987	91656987	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctctcagcactgctgacCgcagccggccaggcctgtgg	13	16	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91656987	T	T	91656987	2	4	90	1	0	0	0	0	0	0	0	1	14385	639	23	4		4	SHC3	9	91656987	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	20558099	91656987	49556444	221	91766											
NOL8	55035	broad.mit.edu	37	chr9	95069331	95069331	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaagggataattaatActctcttggaaaacacagcc	9	7	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95069331	G	G	95069331	1	3	90	0	1	0	0	0	0	0	0	0	10622	406	14	5		5	NOL8	9	95069331	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3412344	95069331	46144100	222	91767											
TMEM38B	55151	broad.mit.edu	37	chr9	108472593	108472593	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcattgtcggaatggcttCtgctactctgtggtcttcca	10	10	4	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108472593	T	T	108472593	1	4	90	0	1	0	0	0	0	0	0	0	16283	928	32	4		4	TMEM38B	9	108472593	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	13403262	108472593	32740838	223	91768											
SVEP1	79987	broad.mit.edu	37	chr9	113170491	113170491	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcctggcttgcaggtataGagagctgtgctgagataggc	15	7	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113170491	C	C	113170491	2	2	90	1	0	0	0	0	0	0	0	1	15538	929	33	4		4	SVEP1	9	113170491	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4697898	113170491	28042940	224	91769											
SVEP1	79987	broad.mit.edu	37	chr9	113259169	113259169	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttgctgttccagagtctTagcctctatgtccttaggac	8	11	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113259169	A	A	113259169	4	1	90	1	0	0	0	0	0	1	0	0	15538	1763	61	5	9153	5	SVEP1	9	113259169	Nonsense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	88678	113259169	27954262	225	91770											
C9orf43	257169	broad.mit.edu	37	chr9	116187352	116187352	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattacataacctgaagacAgaaggtagatttgctgttgc	9	6	0	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116187352	G	G	116187352	2	3	90	1	0	0	0	0	0	0	0	1	2509	175	7	5		5	C9orf43	9	116187352	Silent	SNP	A	TCGA-17-Z061-01A-01W-0747-08	2928183	116187352	25026079	226	91771											
TRAF1	7185	broad.mit.edu	37	chr9	123675582	123675582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctcagccgggcttgaaGgcaaacctgcctcccacact	12	15	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123675582	A	A	123675582	1	1	90	0	1	0	0	0	0	0	0	0	16561	1015	35	4		4	TRAF1	9	123675582	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7488230	123675582	17537849	227	91772											
RAB14	51552	broad.mit.edu	37	chr9	123945668	123945671	+	Frame_Shift_Del	DEL	AATT	-	-													tctgctttatttcctatgagAattattacctaatttgtgat							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123945671	-	-	123945668	7	5	90	1	0	1	0	1	0	0	0	0	13008	242	9	0	299	0	RAB14	9	123945668	Frame_Shift_Del	DEL	AATT	TCGA-17-Z061-01A-01W-0747-08	270086	123945668	17267763	228	91773											
RABGAP1	23637	broad.mit.edu	37	chr9	125852587	125852587	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctacaagaagctaacatgAggttggaacaggaaaacgat	11	6	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125852587	T	T	125852587	3	4	90	1	0	0	0	0	1	0	0	0	13072	295	11	5	2629	5	RABGAP1	9	125852587	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1906919	125852587	15360844	229	91774											
NR5A1	2516	broad.mit.edu	37	chr9	127262970	127262970	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaaacttgttccggccaCccctcatacggtcagcgcgc	9	18	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127262970	T	T	127262970	3	4	90	1	0	0	0	0	1	0	0	0	10730	507	18	4	1132	4	NR5A1	9	127262970	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1410383	127262970	13950461	230	91775											
FAM125B	89853	broad.mit.edu	37	chr9	129154262	129154262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgctgccaggaataggGcgtgacaggggatgtggttt	16	7	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129154262	T	T	129154262	1	4	90	0	1	0	0	0	0	0	0	0	5474	1218	42	3		3	FAM125B	9	129154262	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1891292	129154262	12059169	231	91776											
PTGES2	80142	broad.mit.edu	37	chr9	130884774	130884775	+	Intron	DEL	AA	-	-													ggtgcctgggcggggaagggAaaagcccctcaggggagccc							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130884775	-	-	130884774	6	5	90	0	1	1	0	1	0	0	0	0	12853	261	9	0		0	PTGES2	9	130884774	Intron	DEL	AA	TCGA-17-Z061-01A-01W-0747-08	1730512	130884774	10328657	232	91777											
ODF2	4957	broad.mit.edu	37	chr9	131258469	131258469	+	Intron	DEL	T	-	-													ctcttcctaggacctgagacTttcagccacttagctgtttt							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131258469	-	-	131258469	6	5	90	0	1	1	0	1	0	0	0	0	10922	1624	56	0		0	ODF2	9	131258469	Intron	DEL	T	TCGA-17-Z061-01A-01W-0747-08	373695	131258469	9954962	233	91778											
POMT1	10585	broad.mit.edu	37	chr9	134393765	134393765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatcattgtttggtgacagGtctttatttttacattgaag	9	4	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134393765	T	T	134393765	1	4	90	0	1	0	0	0	0	0	0	0	12340	1276	44	3		3	POMT1	9	134393765	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3135296	134393765	6819666	234	91779											
DDX31	64794	broad.mit.edu	37	chr9	135535215	135535215	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacctatattacccagttActggcagagacgcaggatac	8	10	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135535215	G	G	135535215	1	3	90	0	1	0	0	0	0	0	0	0	4389	406	14	5		5	DDX31	9	135535215	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1141450	135535215	5678216	235	91780											
COL5A1	1289	broad.mit.edu	37	chr9	137708877	137708877	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcccaataccagggatcCcccggccctactggtgaacc	8	17	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137708877	T	T	137708877	2	4	90	1	0	0	0	0	0	0	0	1	3728	610	22	4		4	COL5A1	9	137708877	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2173662	137708877	3504554	236	91781											
ADARB2	105	broad.mit.edu	37	chr10	1229333	1229333	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggacaagaaggagaaagagCcaatcagacaccagcagaaa	11	9	1	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1229333	G	G	1229333	1	3	90	0	1	0	0	0	0	0	0	0	283	754	26	4		4	ADARB2	10	1229333	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08		1229333	134305414	237	91782											
C10orf18	54906	broad.mit.edu	37	chr10	5762569	5762569	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagacagatctgtccttaTgtaattgtagcttttcgata	7	9	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5762569	C	C	5762569	1	2	90	0	1	0	0	0	0	0	0	0	1607	1479	51	5		5	C10orf18	10	5762569	5'UTR	SNP	T	TCGA-17-Z061-01A-01W-0747-08	4533236	5762569	129772178	238	91783											
GAD2	2572	broad.mit.edu	37	chr10	26589865	26589865	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacttcctgattgaagaaaTagaacgccttggacaagatt	9	7	0	6			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26589865	C	C	26589865	3	2	90	1	0	0	0	0	1	0	0	0	6240	1406	49	5	1795	5	GAD2	10	26589865	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	20827296	26589865	108944882	239	91784											
C10orf68	79741	broad.mit.edu	37	chr10	32873348	32873348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatacaaacaacttgttagGgagtcactggatagcataca	8	7	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32873348	T	T	32873348	1	4	90	0	1	0	0	0	0	0	0	0	1624	1247	43	2		2	C10orf68	10	32873348	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	6283483	32873348	102661399	240	91785											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43657820	43657820	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatggccaggttgggtggggGtattgggactggcccagctt	18	7	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43657820	C	C	43657820	1	2	90	0	1	0	0	0	0	0	0	0	3973	1276	44	4		4	CSGALNACT2	10	43657820	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	10784472	43657820	91876927	241	91786											
C10orf71	118461	broad.mit.edu	37	chr10	50532047	50532047	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaaggagcccagtgaatGtcagtctcgagacagctaca	12	9	2	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50532047	A	A	50532047	3	1	90	1	0	0	0	0	1	0	0	0	1625	1377	48	4	1459	4	C10orf71	10	50532047	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	6874227	50532047	85002700	242	91787											
ERCC6	2074	broad.mit.edu	37	chr10	50681411	50681411	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtctccccttaggccccctCccaagcccagatgtcaatgc	7	18	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50681411	A	A	50681411	1	1	90	0	1	0	0	0	0	0	0	0	5259	870	30	3		3	ERCC6	10	50681411	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	149364	50681411	84853336	243	91788											
ERCC6	2074	broad.mit.edu	37	chr10	50738714	50738714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcctaaattaagtgccCctaaatgatgactttttcaa	4	9	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50738714	A	A	50738714	1	1	90	0	1	0	0	0	0	0	0	0	5259	638	22	2		2	ERCC6	10	50738714	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	57303	50738714	84796033	244	91789											
FAM13C	220965	broad.mit.edu	37	chr10	61014282	61014282	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttagcagacaaaaagccTcaaagtaaaggattataata	6	5	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61014282	G	G	61014282	1	3	90	0	1	0	0	0	0	0	0	0	5500	1566	54	5		5	FAM13C	10	61014282	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	10275568	61014282	74520465	245	91790											
JMJD1C	221037	broad.mit.edu	37	chr10	64952803	64952803	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgtgcctacatcactctCtgggctgctgccaccatttt	7	14	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64952803	T	T	64952803	3	4	90	1	0	0	0	0	1	0	0	0	8020	922	32	4	1695	4	JMJD1C	10	64952803	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3938521	64952803	70581944	246	91791											
CTNNA3	29119	broad.mit.edu	37	chr10	68040410	68040410	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaataaggagaagattgTcctctttgtatttttggatt	9	3	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68040410	A	A	68040410	1	1	90	0	1	0	0	0	0	0	0	0	4048	1682	58	5		5	CTNNA3	10	68040410	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3087607	68040410	67494337	247	91792											
ABCC2	1244	broad.mit.edu	37	chr10	101605389	101605389	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatattcgcagattggtgtGgtgggcaggacaggagctgg	17	6	0	1	rs142713507		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101605389	C	C	101605389	2	2	90	1	0	0	0	0	0	0	0	1	53	1335	47	4		4	ABCC2	10	101605389	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	33564979	101605389	33929358	248	91793											
CUEDC2	79004	broad.mit.edu	37	chr10	104184352	104184352	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgagaggatgactctgCccaccccataatcagccagc	10	14	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104184352	G	G	104184352	1	3	90	0	1	0	0	0	0	0	0	0	4086	754	26	4		4	CUEDC2	10	104184352	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2578963	104184352	31350395	249	91794											
SORCS3	22986	broad.mit.edu	37	chr10	106927120	106927120	+	Intron	DEL	C	-	-													catttgtggtaaggagagctCcctaccctattaatgagcta							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	106927120	-	-	106927120	6	5	90	0	1	1	0	1	0	0	0	0	15046	870	30	0		0	SORCS3	10	106927120	Intron	DEL	C	TCGA-17-Z061-01A-01W-0747-08	2742768	106927120	28607627	250	91795											
SORCS1	114815	broad.mit.edu	37	chr10	108716299	108716299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagctctctgtgatgctccCcaggttatagtcatagagct	10	11	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108716299	A	A	108716299	3	1	90	1	0	0	0	0	1	0	0	0	15044	623	22	2	3242	2	SORCS1	10	108716299	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1789179	108716299	26818448	251	91796											
C10orf81	79949	broad.mit.edu	37	chr10	115529654	115529654	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccaagaaatggtctccaaGacaaggtaatggggctcact	10	10	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115529654	A	A	115529654	3	1	90	1	0	0	0	0	1	0	0	0	1630	942	33	4	569	4	C10orf81	10	115529654	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	6813355	115529654	20005093	252	91797											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236535	118236535	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactcattaaatcgggggatCtaccgtgtctttttcttccc	7	11	4	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118236535	A	A	118236535	1	1	90	0	1	0	0	0	0	0	0	0	12247	928	32	3		3	PNLIPRP3	10	118236535	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2706881	118236535	17298212	253	91798											
DMBT1	1755	broad.mit.edu	37	chr10	124389679	124389679	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacactgatgtcctttgactTaattgaggaagagctagaag	10	6	0	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124389679	A	A	124389679	1	1	90	0	1	0	0	0	0	0	0	0	4617	1769	61	5		5	DMBT1	10	124389679	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6153144	124389679	11145068	254	91799											
FRG2B	441581	broad.mit.edu	37	chr10	135440217	135440217	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cactggatggaggagcagtgGagatcggggtcttcatttcc	15	8	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135440217	C	C	135440217	2	2	90	1	0	0	0	0	0	0	0	1	6107	1161	41	4		4	FRG2B	10	135440217	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	11050538	135440217	94530	255	91800											
OR2D3	120775	broad.mit.edu	37	chr11	6942268	6942268	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgccaaacaggtaaacaGgcaaaaatatcaatgggaga	10	6	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6942268	A	A	6942268	2	1	90	1	0	0	0	0	0	0	0	1	11089	991	35	4		4	OR2D3	11	6942268	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08		6942268	128064248	256	91801											
GALNTL4	374378	broad.mit.edu	37	chr11	11400966	11400966	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggtccccacagtggccaGcacaggtcagttttgaaggg	14	10	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11400966	A	A	11400966	1	1	90	0	1	0	0	0	0	0	0	0	6285	986	34	4		4	GALNTL4	11	11400966	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4458698	11400966	123605550	257	91802											
HTATIP2	10553	broad.mit.edu	37	chr11	20403819	20403819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatactgaatgagagtatgCcactgatggttaatccctag	9	7	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20403819	A	A	20403819	1	1	90	0	1	0	0	0	0	0	0	0	7502	754	26	3		3	HTATIP2	11	20403819	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	9002853	20403819	114602697	258	91803											
SLC6A5	9152	broad.mit.edu	37	chr11	20628684	20628684	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggccatcccagctctacaaGgtgagtccagcctgccgctc	10	16	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20628684	C	C	20628684	3	2	90	1	0	0	0	0	1	0	0	0	14801	1014	35	4	825	4	SLC6A5	11	20628684	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	224865	20628684	114377832	259	91804											
LIN7C	55327	broad.mit.edu	37	chr11	27521053	27521053	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggccctcttctgttttTggtagctcaacaactcgagg	9	12	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27521053	C	C	27521053	2	2	90	1	0	0	0	0	0	0	0	1	8885	1799	63	5		5	LIN7C	11	27521053	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6892369	27521053	107485463	260	91805											
C11orf41	25758	broad.mit.edu	37	chr11	33667500	33667501	+	Missense_Mutation	DNP	GG	AC	AC													ggtggtgaccagcgctccggGgaccatgacgcggcccaggg							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	33667501	AC	AC	33667500	3	1	90	1	0	0	0	0	1	0	0	0	1652	1232	43	4	4867	4	C11orf41	11	33667500	Missense_Mutation	DNP	GG	TCGA-17-Z061-01A-01W-0747-08	6146447	33667500	101339016	261	91806											
OR4P4	81300	broad.mit.edu	37	chr11	55406549	55406549	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagctcttgccacttgtaGttctcatgtaattgttgtgg	9	8	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55406549	A	A	55406549	3	1	90	1	0	0	0	0	1	0	0	0	11174	1029	36	4	718	4	OR4P4	11	55406549	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	21739049	55406549	79599967	262	91807											
SLC43A3	29015	broad.mit.edu	37	chr11	57176818	57176818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagcttcagggaccctcCctccaagcagaagcctggcc	11	15	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57176818	A	A	57176818	1	1	90	0	1	0	0	0	0	0	0	0	14748	638	22	2		2	SLC43A3	11	57176818	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1770269	57176818	77829698	263	91808											
OSBP	5007	broad.mit.edu	37	chr11	59368252	59368252	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatccttgggaatcacaacCcacgtccctcacctctgaga	6	15	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59368252	G	G	59368252	1	3	90	0	1	0	0	0	0	0	0	0	11367	638	22	4		4	OSBP	11	59368252	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2191434	59368252	75638264	264	91809											
PLAC1L	219990	broad.mit.edu	37	chr11	59814331	59814331	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgaatgactattctgtAtatgatcatgatattaaaca	5	7	2	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59814331	G	G	59814331	1	3	90	0	1	0	0	0	0	0	0	0	12108	464	16	5		5	PLAC1L	11	59814331	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	446079	59814331	75192185	265	91810											
SLC22A9	114571	broad.mit.edu	37	chr11	63143161	63143161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcattatcaacaataaacCagaggaaggcttaaaggaac	8	8	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63143161	A	A	63143161	3	1	90	1	0	0	0	0	1	0	0	0	14575	594	21	2	893	2	SLC22A9	11	63143161	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3328830	63143161	71863355	266	91811											
PPP2R5B	5526	broad.mit.edu	37	chr11	64700567	64700567	+	Intron	DEL	G	-	-													gggcagggaaagggagaggtGggcaaaccaaagctgtttca							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64700567	-	-	64700567	6	5	90	0	1	1	0	1	0	0	0	0	12494	1363	47	0		0	PPP2R5B	11	64700567	Intron	DEL	G	TCGA-17-Z061-01A-01W-0747-08	1557406	64700567	70305949	267	91812											
EFEMP2	30008	broad.mit.edu	37	chr11	65637810	65637810	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccacccataatcctgtgTccgaggagctgaattaggca	9	12	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65637810	G	G	65637810	1	3	90	0	1	0	0	0	0	0	0	0	4982	1682	58	5		5	EFEMP2	11	65637810	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	937243	65637810	69368706	268	91813											
SLCO2B1	11309	broad.mit.edu	37	chr11	74899193	74899193	+	Frame_Shift_Del	DEL	C	-	-													tccttcagggcaaggactctCcctctaagcagagccctggg							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74899193	-	-	74899193	7	5	90	1	0	1	0	1	0	0	0	0	14841	855	30	0	1015	0	SLCO2B1	11	74899193	Frame_Shift_Del	DEL	C	TCGA-17-Z061-01A-01W-0747-08	9261383	74899193	60107323	269	91814											
GDPD4	220032	broad.mit.edu	37	chr11	76956619	76956619	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtagccacacatccagCtctacctcagttgctccatt	5	15	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76956619	T	T	76956619	1	4	90	0	1	0	0	0	0	0	0	0	6390	812	28	4		4	GDPD4	11	76956619	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2057426	76956619	58049897	270	91815											
INTS4	92105	broad.mit.edu	37	chr11	77618889	77618889	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacccccaaggcaaacacaGgataaggataatgccaccaa	7	12	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77618889	A	A	77618889	1	1	90	0	1	0	0	0	0	0	0	0	7850	1015	35	4		4	INTS4	11	77618889	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	662270	77618889	57387627	271	91816											
DLG2	1740	broad.mit.edu	37	chr11	83691638	83691638	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacataaatgctgttgtctcCaggaatgtgttggttcccca	9	9	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83691638	A	A	83691638	4	1	90	1	0	0	0	0	0	1	0	0	4595	603	21	2	2078	2	DLG2	11	83691638	Nonsense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	6072749	83691638	51314878	272	91817											
TRIM49	57093	broad.mit.edu	37	chr11	89537547	89537547	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcctgcaaaagctgtgccCacagtctatggtgaccgggt	13	11	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89537547	G	G	89537547	3	3	90	1	0	0	0	0	1	0	0	0	16649	594	21	4	1291	4	TRIM49	11	89537547	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5845909	89537547	45468969	273	91818											
TRPC6	7225	broad.mit.edu	37	chr11	101353775	101353775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctgtgctggtttcattaGgaaggagttttgtgccttca	11	6	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101353775	A	A	101353775	3	1	90	1	0	0	0	0	1	0	0	0	16708	1000	35	4	1416	4	TRPC6	11	101353775	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	11816228	101353775	33652741	274	91819											
TMEM123	114908	broad.mit.edu	37	chr11	102272641	102272641	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaggtcagctttaatAcatacttgttactgatgaag	7	5	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102272641	G	G	102272641	1	3	90	0	1	0	0	0	0	0	0	0	16159	406	14	5		5	TMEM123	11	102272641	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	918866	102272641	32733875	275	91820											
ELMOD1	55531	broad.mit.edu	37	chr11	107535627	107535627	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattttctagattttgaggtCttctttgagctccacggttg	9	7	3	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107535627	A	A	107535627	1	1	90	0	1	0	0	0	0	0	0	0	5110	928	32	3		3	ELMOD1	11	107535627	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5262986	107535627	27470889	276	91821											
ELMOD1	55531	broad.mit.edu	37	chr11	107535640	107535640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggtcttctttgagctcCacggttgctgtggcttggtt	13	8	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107535640	A	A	107535640	1	1	90	0	1	0	0	0	0	0	0	0	5110	609	21	2		2	ELMOD1	11	107535640	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	13	107535640	27470876	277	91822											
ACAT1	38	broad.mit.edu	37	chr11	108012291	108012291	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagttgcttgctgaatgactActtgttttgagcgattttac	9	7	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108012291	G	G	108012291	1	3	90	0	1	0	0	0	0	0	0	0	121	406	14	5		5	ACAT1	11	108012291	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	476651	108012291	26994225	278	91823											
ABCG4	64137	broad.mit.edu	37	chr11	119025058	119025058	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcctgctacatcatgcaaGatgacatgctgctgccgcac	9	13	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119025058	T	T	119025058	3	4	90	1	0	0	0	0	1	0	0	0	70	942	33	3	455	3	ABCG4	11	119025058	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	11012767	119025058	15981458	279	91824											
SCN3B	55800	broad.mit.edu	37	chr11	123505041	123505041	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catttccttctgctgtgtttCtcaagagaaaaacaaccttt	5	10	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123505041	A	A	123505041	1	1	90	0	1	0	0	0	0	0	0	0	14032	928	32	3		3	SCN3B	11	123505041	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	4479983	123505041	11501475	280	91825											
OR8B2	26595	broad.mit.edu	37	chr11	124252875	124252875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattacagatggccacatagCgatcatatgccattgaagtc	9	9	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124252875	A	A	124252875	3	1	90	1	0	0	0	0	1	0	0	0	11321	768	27	3	579	3	OR8B2	11	124252875	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	747834	124252875	10753641	281	91826											
OR8B3	390271	broad.mit.edu	37	chr11	124266883	124266883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattacagatggccacatagCgatcatatgccattgaggtc	10	9	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124266883	A	A	124266883	3	1	90	1	0	0	0	0	1	0	0	0	11322	768	27	3	578	3	OR8B3	11	124266883	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	14008	124266883	10739633	282	91827											
PKNOX2	63876	broad.mit.edu	37	chr11	125267966	125267966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcactcacaggtaacacCcagagctgggtcccatctct	7	16	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125267966	A	A	125267966	1	1	90	0	1	0	0	0	0	0	0	0	12078	638	22	2		2	PKNOX2	11	125267966	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1001083	125267966	9738550	283	91828											
ADIPOR2	79602	broad.mit.edu	37	chr12	1892944	1892944	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaattttatatgctactttGaaatattcagtttacagagt	5	5	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1892944	C	C	1892944	1	2	90	0	1	0	0	0	0	0	0	0	319	1305	45	4		4	ADIPOR2	12	1892944	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08		1892944	131958951	284	91829											
PEX5	5830	broad.mit.edu	37	chr12	7361712	7361712	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccttttcaacctgagtggGgagtatgacaaggccgtgga	14	8	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7361712	A	A	7361712	2	1	90	1	0	0	0	0	0	0	0	1	11843	1219	43	4		4	PEX5	12	7361712	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5468768	7361712	126490183	285	91830											
CD163L1	283316	broad.mit.edu	37	chr12	7548949	7548949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccgtccttgaaagtacaCctccagtcttcccgagcagc	7	17	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7548949	A	A	7548949	3	1	90	1	0	0	0	0	1	0	0	0	2998	507	18	3	2617	3	CD163L1	12	7548949	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	187237	7548949	126302946	286	91831											
PZP	5858	broad.mit.edu	37	chr12	9353999	9353999	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attccagcaaaggctacaatTtcagacttgtgatcaaacaa	6	9	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9353999	G	G	9353999	1	3	90	0	1	0	0	0	0	0	0	0	12977	1856	64	5		5	PZP	12	9353999	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	1805050	9353999	124497896	287	91832											
PRB4	5545	broad.mit.edu	37	chr12	11461970	11461970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctggagtggaacgctgGgggaaaagggagaagttgag	18	4	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11461970	T	T	11461970	1	4	90	0	1	0	0	0	0	0	0	0	12551	1247	43	2		2	PRB4	12	11461970	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2107971	11461970	122389925	288	91833											
PTPRO	5800	broad.mit.edu	37	chr12	15731818	15731818	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattggactggatatcccacActttgctgcagatcttccac	8	12	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15731818	T	T	15731818	3	4	90	1	0	0	0	0	1	0	0	0	12917	159	6	5	2939	5	PTPRO	12	15731818	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	4269848	15731818	118120077	289	91834											
SLCO1B1	10599	broad.mit.edu	37	chr12	21349796	21349796	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaattgaggaaatgtagTttactttcttcataccatta	7	5	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21349796	C	C	21349796	1	2	90	0	1	0	0	0	0	0	0	0	14837	1740	60	5		5	SLCO1B1	12	21349796	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5617978	21349796	112502099	290	91835											
PRPH	5630	broad.mit.edu	37	chr12	49690770	49690770	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacggcagcgctgagggaCatccgcgcgcagtacgagag	16	12	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49690770	T	T	49690770	2	4	90	1	0	0	0	0	0	0	0	1	12682	477	17	4		4	PRPH	12	49690770	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	28340974	49690770	84161125	291	91836											
NCKAP1L	3071	broad.mit.edu	37	chr12	54902294	54902294	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcatgtacaattgtgcccAtgagatgctgcatgggcatg	13	8	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54902294	G	G	54902294	3	3	90	1	0	0	0	0	1	0	0	0	10317	217	8	5	503	5	NCKAP1L	12	54902294	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	5211524	54902294	78949601	292	91837											
GRIP1	23426	broad.mit.edu	37	chr12	66961681	66961681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcgaggatagaacatcCgtaaacactggggaatgtga	12	8	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66961681	A	A	66961681	1	1	90	0	1	0	0	0	0	0	0	0	6853	667	23	1		1	GRIP1	12	66961681	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	12059387	66961681	66890214	293	91838											
IL22	50616	broad.mit.edu	37	chr12	68642525	68642525	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctttggggcatctaattGttatttctagcagggaaagg	12	6	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68642525	T	T	68642525	1	4	90	0	1	0	0	0	0	0	0	0	7742	1392	48	3		3	IL22	12	68642525	3'UTR	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1680844	68642525	65209370	294	91839											
PTPRB	5787	broad.mit.edu	37	chr12	70974895	70974895	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacggagtacaggctgccGgacttgagagagtggaagct	15	9	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70974895	T	T	70974895	2	4	90	1	0	0	0	0	0	0	0	1	12904	1103	39	1		1	PTPRB	12	70974895	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2332370	70974895	62877000	295	91840											
OSBPL8	114882	broad.mit.edu	37	chr12	76765387	76765387	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatttaaaaaaattcaaaaTtaatgtaaagaattatactt	2	2	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76765387	C	C	76765387	1	2	90	0	1	0	0	0	0	0	0	0	11377	1508	52	5		5	OSBPL8	12	76765387	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5790492	76765387	57086508	296	91841											
SCYL2	55681	broad.mit.edu	37	chr12	100704737	100704737	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttttattgtgaagagtAgcaataattattatttttgt	6	2	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100704737	C	C	100704737	1	2	90	0	1	0	0	0	0	0	0	0	14061	435	15	5		5	SCYL2	12	100704737	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	23939350	100704737	33147158	297	91842											
STAB2	55576	broad.mit.edu	37	chr12	104109795	104109795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaaataaatactttagGggaaattctgaaagaatcaa	8	4	2	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104109795	T	T	104109795	1	4	90	0	1	0	0	0	0	0	0	0	15356	1247	43	2		2	STAB2	12	104109795	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3405058	104109795	29742100	298	91843											
GIT2	9815	broad.mit.edu	37	chr12	110370790	110370790	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccctgcccttgtcagttgTtgttctctttggtggtgatg	12	9	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110370790	A	A	110370790	3	1	90	1	0	0	0	0	1	0	0	0	6461	1725	60	5	10	5	GIT2	12	110370790	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6260995	110370790	23481105	299	91844											
ATXN2	6311	broad.mit.edu	37	chr12	111907921	111907921	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttcctaccatacatcgCatgcgtctgctcatgagccc	8	15	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111907921	T	T	111907921	3	4	90	1	0	0	0	0	1	0	0	0	1215	710	25	4	658	4	ATXN2	12	111907921	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1537131	111907921	21943974	300	91845											
CCDC60	160777	broad.mit.edu	37	chr12	119909874	119909874	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagactgcaaagaaaaagaaGcaacaacaacttcagaaact	7	8	1	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119909874	A	A	119909874	2	1	90	1	0	0	0	0	0	0	0	1	2859	962	34	4		4	CCDC60	12	119909874	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	8001953	119909874	13942021	301	91846											
DNAH10	196385	broad.mit.edu	37	chr12	124416425	124416425	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcatgtgcagattactgCctagatacgtggcacctggg	11	11	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124416425	T	T	124416425	1	4	90	0	1	0	0	0	0	0	0	0	4638	754	26	4		4	DNAH10	12	124416425	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	4506551	124416425	9435470	302	91847											
MTIF3	219402	broad.mit.edu	37	chr13	28011508	28011508	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaatcctaggttgccacctGacaatcttctcatctggctt	6	12	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28011508	C	C	28011508	1	2	90	0	1	0	0	0	0	0	0	0	10029	1305	45	4		4	MTIF3	13	28011508	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08		28011508	87158370	303	91848											
RB1	5925	broad.mit.edu	37	chr13	48892090	48892090	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagactccttggccttttccGccaaaaacttactaatctac	4	14	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48892090	A	A	48892090	1	1	90	0	1	0	0	0	0	0	0	0	13206	1102	38	4		4	RB1	13	48892090	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	20880582	48892090	66277788	304	91849											
RB1	5925	broad.mit.edu	37	chr13	48919228	48919229	+	Frame_Shift_Ins	INS	-	T	T													tttgtagtgtccataaattcINStttaacttactaaaagaaat							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48919229	T	T	48919228	7	5	90	1	0	1	1	0	0	0	0	0	13206	912	32	0	407	0	RB1	13	48919228	Frame_Shift_Ins	INS	-	TCGA-17-Z061-01A-01W-0747-08	27138	48919228	66250650	305	91850											
PCDH8	5100	broad.mit.edu	37	chr13	53418775	53418775	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtactccaatctcctGcaggtctgggagcctccctg	13	13	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53418775	A	A	53418775	4	1	90	1	0	0	0	0	0	1	0	0	11611	1328	46	4	83	4	PCDH8	13	53418775	Nonsense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4499547	53418775	61751103	306	91851											
PCDH8	5100	broad.mit.edu	37	chr13	53420598	53420598	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatggcgaaggcttcgcgCggctcctgctgctgcagctc	14	15	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53420598	A	A	53420598	2	1	90	1	0	0	0	0	0	0	0	1	11611	755	27	3		3	PCDH8	13	53420598	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1823	53420598	61749280	307	91852											
PCDH9	5101	broad.mit.edu	37	chr13	67802394	67802394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtctgtagacaaggctgGcgctggtccctgtggcagca	14	12	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67802394	A	A	67802394	3	1	90	1	0	0	0	0	1	0	0	0	11612	1203	42	4	3550	4	PCDH9	13	67802394	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	14381796	67802394	47367484	308	91853											
PIBF1	10464	broad.mit.edu	37	chr13	73401179	73401179	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacttgaacaggaagtaattGagcttaggagaaaacatgaa	10	5	0	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73401179	A	A	73401179	3	1	90	1	0	0	0	0	1	0	0	0	11974	1291	45	4	860	4	PIBF1	13	73401179	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5598785	73401179	41768699	309	91854											
PIBF1	10464	broad.mit.edu	37	chr13	73539483	73539483	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcattgaatcagtgcgtcaGagagattctaagattgattc	9	7	4	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73539483	C	C	73539483	3	2	90	1	0	0	0	0	1	0	0	0	11974	933	33	4	1959	4	PIBF1	13	73539483	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	138304	73539483	41630395	310	91855											
OR4K5	79317	broad.mit.edu	37	chr14	20388566	20388566	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattaagcattatttagacAtttacataagttctttccta	3	6	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20388566	T	T	20388566	1	4	90	0	1	0	0	0	0	0	0	0	11167	232	8	5		5	OR4K5	14	20388566	5'Flank	SNP	A	TCGA-17-Z061-01A-01W-0747-08		20388566	86960974	311	91856											
TTC5	91875	broad.mit.edu	37	chr14	20760331	20760331	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaggaaaacaaaaaggtaTgtgggtaggaaagaagagca	15	2	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20760331	A	A	20760331	1	1	90	0	1	0	0	0	0	0	0	0	16837	1479	51	5		5	TTC5	14	20760331	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	371765	20760331	86589209	312	91857											
TOX4	9878	broad.mit.edu	37	chr14	21963234	21963234	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaagctggactatagagggGagaccaagaactcaccttct	11	9	2	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21963234	T	T	21963234	1	4	90	0	1	0	0	0	0	0	0	0	16504	1189	41	3		3	TOX4	14	21963234	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1202903	21963234	85386306	313	91858											
DHRS2	10202	broad.mit.edu	37	chr14	24108203	24108203	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtagccgtggtcacggggTccaccagtgggtgagtgctg	19	9	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24108203	G	G	24108203	3	3	90	1	0	0	0	0	1	0	0	0	4530	1667	58	5	132	5	DHRS2	14	24108203	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2144969	24108203	83241337	314	91859											
PRKD1	5587	broad.mit.edu	37	chr14	30099917	30099917	+	Intron	DEL	T	-	-													ggggtaggcacatgatgagcTttgggctggttagaaaactg							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30099917	-	-	30099917	6	5	90	0	1	1	0	1	0	0	0	0	12624	1624	56	0		0	PRKD1	14	30099917	Intron	DEL	T	TCGA-17-Z061-01A-01W-0747-08	5991714	30099917	77249623	315	91860											
SYT16	83851	broad.mit.edu	37	chr14	62550851	62550851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccaaacataatatcggCtttctctaaaagagagtagt	6	8	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62550851	A	A	62550851	1	1	90	0	1	0	0	0	0	0	0	0	15591	812	28	3		3	SYT16	14	62550851	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	32450934	62550851	44798689	316	91861											
SPTB	6710	broad.mit.edu	37	chr14	65233988	65233988	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactcccacttggcagagcAttcagctccctggacacacg	8	16	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65233988	G	G	65233988	1	3	90	0	1	0	0	0	0	0	0	0	15236	232	8	5		5	SPTB	14	65233988	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	2683137	65233988	42115552	317	91862											
MPP5	64398	broad.mit.edu	37	chr14	67768207	67768207	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatggacagaatactatAtatgtggtttttccagcatt	8	5	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67768207	C	C	67768207	1	2	90	0	1	0	0	0	0	0	0	0	9831	464	16	5		5	MPP5	14	67768207	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	2534219	67768207	39581333	318	91863											
GALC	2581	broad.mit.edu	37	chr14	88419370	88419370	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagctatgttggatttggTttgtagtactaaacaaatta	9	4	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88419370	C	C	88419370	1	2	90	0	1	0	0	0	0	0	0	0	6263	1740	60	5		5	GALC	14	88419370	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	20651163	88419370	18930170	319	91864											
EML5	161436	broad.mit.edu	37	chr14	89151553	89151553	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaacagtgtatatattgCcaattaagctattttgacag	6	6	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89151553	T	T	89151553	1	4	90	0	1	0	0	0	0	0	0	0	5142	754	26	4		4	EML5	14	89151553	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	732183	89151553	18197987	320	91865											
PPP4R4	57718	broad.mit.edu	37	chr14	94708515	94708515	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatatgatttttagttaaAttacaattcagagaacatga	5	4	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94708515	C	C	94708515	1	2	90	0	1	0	0	0	0	0	0	0	12506	116	4	5		5	PPP4R4	14	94708515	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	5556962	94708515	12641025	321	91866											
SERPINA3	12	broad.mit.edu	37	chr14	95090116	95090116	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacacccagaacatcttcTtcatgagcaaagtcaccaat	5	13	4	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95090116	C	C	95090116	3	2	90	1	0	0	0	0	1	0	0	0	14203	1609	56	5	1251	5	SERPINA3	14	95090116	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	381601	95090116	12259424	322	91867											
ZNF839	55778	broad.mit.edu	37	chr14	102798180	102798180	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcaaagccaggctcaaGgaggtacctcactcttaaac	8	13	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102798180	A	A	102798180	2	1	90	1	0	0	0	0	0	0	0	1	18317	991	35	4		4	ZNF839	14	102798180	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7708064	102798180	4551360	323	91868											
MKRN3	7681	broad.mit.edu	37	chr15	23811246	23811246	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctgcaggtattatatacAtgggcagtgcaaggaggggg	15	6	1	0	rs143897856	byFrequency	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23811246	T	T	23811246	3	4	90	1	0	0	0	0	1	0	0	0	9701	217	8	5	319	5	MKRN3	15	23811246	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08		23811246	78720146	324	91869											
OCA2	4948	broad.mit.edu	37	chr15	28228675	28228675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtcccactatacacatcGtgaaaggcccacatgcaacc	7	14	0	1	rs150220101	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28228675	T	T	28228675	1	4	90	0	1	0	0	0	0	0	0	0	10910	1160	40	3		3	OCA2	15	28228675	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4417429	28228675	74302717	325	91870											
MEIS2	4212	broad.mit.edu	37	chr15	37375926	37375926	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcataaaatactgaagttaTtttagtcatgcctactttgc	5	7	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37375926	C	C	37375926	1	2	90	0	1	0	0	0	0	0	0	0	9561	1508	52	5		5	MEIS2	15	37375926	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	9147251	37375926	65155466	326	91871											
TMEM87A	25963	broad.mit.edu	37	chr15	42525345	42525345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacagacatttccaatcCacactgtcaagatgtaaaca	5	13	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42525345	T	T	42525345	1	4	90	0	1	0	0	0	0	0	0	0	16333	609	21	4		4	TMEM87A	15	42525345	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5149419	42525345	60006047	327	91872											
CDAN1	146059	broad.mit.edu	37	chr15	43027621	43027621	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatgggcaccatttggagcCaaggctcagttccaagtgcc	12	11	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43027621	T	T	43027621	1	4	90	0	1	0	0	0	0	0	0	0	3084	609	21	4		4	CDAN1	15	43027621	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	502276	43027621	59503771	328	91873											
EPB42	2038	broad.mit.edu	37	chr15	43500990	43500990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactgtgagaagaggggcGgagtgtcagggggcgcttga	20	6	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43500990	T	T	43500990	1	4	90	0	1	0	0	0	0	0	0	0	5200	1131	39	1		1	EPB42	15	43500990	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	473369	43500990	59030402	329	91874											
TMOD3	29766	broad.mit.edu	37	chr15	52153328	52153328	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgttgaacataattgatAaagtcgtccttgaaaagggc	9	6	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52153328	G	G	52153328	1	3	90	0	1	0	0	0	0	0	0	0	16358	377	13	5		5	TMOD3	15	52153328	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	8652338	52153328	50378064	330	91875											
MYO5C	55930	broad.mit.edu	37	chr15	52517879	52517879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcttgttaaaccatcaCtgcctacacagcttggcctt	5	12	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52517879	A	A	52517879	1	1	90	0	1	0	0	0	0	0	0	0	10174	580	20	3		3	MYO5C	15	52517879	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	364551	52517879	50013513	331	91876											
TLN2	83660	broad.mit.edu	37	chr15	63031648	63031648	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtggtccatgccacccgGggccagagtggagagttggc	17	10	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63031648	T	T	63031648	2	4	90	1	0	0	0	0	0	0	0	1	16071	1219	43	2		2	TLN2	15	63031648	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	10513769	63031648	39499744	332	91877											
NOX5	79400	broad.mit.edu	37	chr15	69222964	69222964	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggccccaggacgttccggtCgcatggcagagtgctacgga	15	12	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69222964	G	G	69222964	1	3	90	0	1	0	0	0	0	0	0	0	10654	899	31	4		4	NOX5	15	69222964	5'UTR	SNP	C	TCGA-17-Z061-01A-01W-0747-08	6191316	69222964	33308428	333	91878											
HEXA	3073	broad.mit.edu	37	chr15	72645968	72645968	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaagatttttctaggaTtctcaatattgggatccaac	6	7	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72645968	C	C	72645968	1	2	90	0	1	0	0	0	0	0	0	0	7140	1508	52	5		5	HEXA	15	72645968	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3423004	72645968	29885424	334	91879											
TBC1D21	161514	broad.mit.edu	37	chr15	74178975	74178975	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaggtgtccagctagggatCatcaggctgggctccaccca	13	12	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74178975	G	G	74178975	1	3	90	0	1	0	0	0	0	0	0	0	15729	841	29	4		4	TBC1D21	15	74178975	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1533007	74178975	28352417	335	91880											
C15orf26	161502	broad.mit.edu	37	chr15	81429058	81429058	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcagttcaagccaagaccCcaattggcagaaacactttt	8	12	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81429058	G	G	81429058	3	3	90	1	0	0	0	0	1	0	0	0	1800	623	22	4	371	4	C15orf26	15	81429058	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	7250083	81429058	21102334	336	91881											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84582188	84582188	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctagtggtttgagaaAttactcaatcaggtaagcca	10	6	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84582188	C	C	84582188	1	2	90	0	1	0	0	0	0	0	0	0	276	116	4	5		5	ADAMTSL3	15	84582188	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3153130	84582188	17949204	337	91882											
KIF7	374654	broad.mit.edu	37	chr15	90188567	90188567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatcccacccagcttacCtctggaccctggaatggctg	9	16	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90188567	A	A	90188567	3	1	90	1	0	0	0	0	1	0	0	0	8379	695	24	2	2037	2	KIF7	15	90188567	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5606379	90188567	12342825	338	91883											
WDR93	56964	broad.mit.edu	37	chr15	90276380	90276380	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatgtgtggtgctgtgcAcagacgcctccctccatctg	11	12	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90276380	T	T	90276380	3	4	90	1	0	0	0	0	1	0	0	0	17467	159	6	5	1520	5	WDR93	15	90276380	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	87813	90276380	12255012	339	91884											
TTLL13	440307	broad.mit.edu	37	chr15	90799470	90799470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtggcatcttcattaccCgaaatccccgggagatcaag	10	12	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90799470	A	A	90799470	2	1	90	1	0	0	0	0	0	0	0	1	16852	644	23	1		1	TTLL13	15	90799470	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	523090	90799470	11731922	340	91885											
GP2	2813	broad.mit.edu	37	chr16	20337710	20337710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggagaccaaggccagcCacaggaggccagagcccacc	13	15	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20337710	A	A	20337710	3	1	90	1	0	0	0	0	1	0	0	0	6647	595	21	2	1613	2	GP2	16	20337710	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08		20337710	70017043	341	91886											
DNAH3	55567	broad.mit.edu	37	chr16	21136530	21136530	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagggaaacgaggtcctcaAgtgacttaatgaccagctcc	10	10	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21136530	G	G	21136530	3	3	90	1	0	0	0	0	1	0	0	0	4643	72	3	5	11195	5	DNAH3	16	21136530	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	798820	21136530	69218223	342	91887											
OTOA	146183	broad.mit.edu	37	chr16	21690111	21690111	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctcagagtggacagttaTaattaaaattcactaaaaat	5	5	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21690111	C	C	21690111	1	2	90	0	1	0	0	0	0	0	0	0	11396	1421	49	5		5	OTOA	16	21690111	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	553581	21690111	68664642	343	91888											
SETD1A	9739	broad.mit.edu	37	chr16	30977308	30977308	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagggattgattgccgcCtcagctggcccccccggtgg	15	14	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30977308	T	T	30977308	2	4	90	1	0	0	0	0	0	0	0	1	14243	668	24	4		4	SETD1A	16	30977308	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	9287197	30977308	59377445	344	91889											
CBLN1	869	broad.mit.edu	37	chr16	49315227	49315227	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcgcacagagatgcccagGgcagtgcccgtggggtcgga	18	11	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49315227	A	A	49315227	2	1	90	1	0	0	0	0	0	0	0	1	2730	1219	43	4		4	CBLN1	16	49315227	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	18337919	49315227	41039526	345	91890											
MMP2	4313	broad.mit.edu	37	chr16	55532197	55532197	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacaccctttgcttccaccCcagggaatgaatactggatc	7	14	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55532197	T	T	55532197	1	4	90	0	1	0	0	0	0	0	0	0	9751	638	22	4		4	MMP2	16	55532197	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	6216970	55532197	34822556	346	91891											
GPR114	221188	broad.mit.edu	37	chr16	57609065	57609065	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtatggctggtgggatGttcactgctaaaggggttca	17	5	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57609065	C	C	57609065	1	2	90	0	1	0	0	0	0	0	0	0	6696	1392	48	4		4	GPR114	16	57609065	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2076868	57609065	32745688	347	91892											
GPR56	9289	broad.mit.edu	37	chr16	57697403	57697403	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactggtccatgcggctgcAggcccggggtggcccctccc	15	16	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57697403	G	G	57697403	3	3	90	1	0	0	0	0	1	0	0	0	6765	188	7	5	2056	5	GPR56	16	57697403	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	88338	57697403	32657350	348	91893											
ITGAE	3682	broad.mit.edu	37	chr17	3626533	3626533	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatctcttctaggggcgatgCccgtgagcaactggataatc	11	10	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3626533	T	T	3626533	1	4	90	0	1	0	0	0	0	0	0	0	7955	754	26	4		4	ITGAE	17	3626533	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08		3626533	77568677	349	91894											
PLD2	5338	broad.mit.edu	37	chr17	4713045	4713045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggcctcacctgctgtgGccgagaccaagtttgttatc	10	13	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4713045	T	T	4713045	3	4	90	1	0	0	0	0	1	0	0	0	12141	1203	42	3	700	3	PLD2	17	4713045	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1086512	4713045	76482165	350	91895											
NEURL4	84461	broad.mit.edu	37	chr17	7219585	7219585	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggggtgtaggagccagggcGcacacacacctggaacgcca	15	13	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7219585	A	A	7219585	3	1	90	1	0	0	0	0	1	0	0	0	10442	1087	38	4	146	4	NEURL4	17	7219585	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2506540	7219585	73975625	351	91896											
TP53	7157	broad.mit.edu	37	chr17	7579494	7579494	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagcagcctctggcattcTgggagcttcatctggacctg	14	11	4	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579494	A	A	7579494	4	1	90	1	0	0	0	0	0	1	0	0	16505	1588	55	5	1109	5	TP53	17	7579494	Nonsense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	359909	7579494	73615716	352	91897											
GAS7	8522	broad.mit.edu	37	chr17	9821344	9821344	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgaacatgtctgtttcatGccgcagctgcgtgtactggc	12	10	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9821344	A	A	9821344	3	1	90	1	0	0	0	0	1	0	0	0	6312	1319	46	4	147	4	GAS7	17	9821344	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2241850	9821344	71373866	353	91898											
MAP2K3	5606	broad.mit.edu	37	chr17	21217432	21217432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcccgctacccctccatGgtgactgtgccttctgtcac	7	19	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21217432	T	T	21217432	1	4	90	0	1	0	0	0	0	0	0	0	9330	1363	47	2		2	MAP2K3	17	21217432	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	11396088	21217432	59977778	354	91899											
TAF15	8148	broad.mit.edu	37	chr17	34144851	34144851	+	Intron	DEL	A	-	-													gagacttgatgctggatgtcAtaagttaaatattagcttgt							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34144851	-	-	34144851	6	5	90	0	1	1	0	1	0	0	0	0	15637	232	8	0		0	TAF15	17	34144851	Intron	DEL	A	TCGA-17-Z061-01A-01W-0747-08	12927419	34144851	47050359	355	91900											
GRB7	2886	broad.mit.edu	37	chr17	37900365	37900365	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcctgagatccagggctttCtgcagctgcggggttcagga	14	10	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37900365	G	G	37900365	3	3	90	1	0	0	0	0	1	0	0	0	6825	912	32	4	728	4	GRB7	17	37900365	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3755514	37900365	43294845	356	91901											
HAP1	9001	broad.mit.edu	37	chr17	39884007	39884007	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggcagaagccggcagcgaGactcacctcttcctggagct	14	13	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39884007	C	C	39884007	1	2	90	0	1	0	0	0	0	0	0	0	7019	957	33	4		4	HAP1	17	39884007	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1983642	39884007	41311203	357	91902											
FMNL1	752	broad.mit.edu	37	chr17	43321499	43321501	+	Intron	DEL	GGA	-	-													gagtacttgagcctccagatGgaggaggctccaacttatct							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43321501	-	-	43321499	6	5	90	0	1	1	0	1	0	0	0	0	6009	1363	47	0		0	FMNL1	17	43321499	Intron	DEL	GGA	TCGA-17-Z061-01A-01W-0747-08	3437492	43321499	37873711	358	91903											
MPO	4353	broad.mit.edu	37	chr17	56350206	56350206	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcgctcccggatctcatcCactgcaatttggttctgacg	8	13	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56350206	T	T	56350206	2	4	90	1	0	0	0	0	0	0	0	1	9826	581	21	4		4	MPO	17	56350206	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	13028707	56350206	24845004	359	91904											
CA4	762	broad.mit.edu	37	chr17	58234824	58234824	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaacaaggccagcatttctgGaggaggactgcctgccccat	12	12	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58234824	A	A	58234824	3	1	90	1	0	0	0	0	1	0	0	0	2544	1174	41	4	319	4	CA4	17	58234824	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1884618	58234824	22960386	360	91905											
ENOSF1	55556	broad.mit.edu	37	chr18	683371	683371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcccagcgctggttggCatccatcatctgcaaaaaga	8	13	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	683371	A	A	683371	3	1	90	1	0	0	0	0	1	0	0	0	5167	710	25	3	604	3	ENOSF1	18	683371	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08		683371	77393877	361	91906											
EPB41L3	23136	broad.mit.edu	37	chr18	5397853	5397853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgagatgcaactaaaggCatgtgacagatatgccaagc	10	8	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5397853	T	T	5397853	1	4	90	0	1	0	0	0	0	0	0	0	5196	725	25	4		4	EPB41L3	18	5397853	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	4714482	5397853	72679395	362	91907											
ZNF521	25925	broad.mit.edu	37	chr18	22907500	22907500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgttcaaatcctaatcccTgatttatgtttatacttttt	3	7	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22907500	C	C	22907500	1	2	90	0	1	0	0	0	0	0	0	0	18092	1595	55	5		5	ZNF521	18	22907500	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	17509647	22907500	55169748	363	91908											
DSC1	1823	broad.mit.edu	37	chr18	28723487	28723487	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaatcatatttttctccCtatgttatttgtaagtagta	5	6	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28723487	T	T	28723487	1	4	90	0	1	0	0	0	0	0	0	0	4805	696	24	4		4	DSC1	18	28723487	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5815987	28723487	49353761	364	91909											
RNF125	54941	broad.mit.edu	37	chr18	29617304	29617304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagttatcatttcacctctGcttctgaccccatggtacgc	6	13	4	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29617304	T	T	29617304	1	4	90	0	1	0	0	0	0	0	0	0	13545	1334	46	3		3	RNF125	18	29617304	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	893817	29617304	48459944	365	91910											
SMAD2	4087	broad.mit.edu	37	chr18	45391530	45391530	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtttaaaacaaatcaagCacagctgcaacataatctca	4	9	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45391530	T	T	45391530	1	4	90	0	1	0	0	0	0	0	0	0	14872	725	25	4		4	SMAD2	18	45391530	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	15774226	45391530	32685718	366	91911											
ACAA2	10449	broad.mit.edu	37	chr18	47322161	47322161	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgatccaagcttggttcCaaaacgcacatttctgacac	6	12	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47322161	A	A	47322161	4	1	90	1	0	0	0	0	0	1	0	0	105	603	21	2	818	2	ACAA2	18	47322161	Nonsense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1930631	47322161	30755087	367	91912											
ME2	4200	broad.mit.edu	37	chr18	48473378	48473378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctacacaataaccttacttAtttttcaggttacagaatac	3	10	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48473378	G	G	48473378	1	3	90	0	1	0	0	0	0	0	0	0	9511	464	16	5		5	ME2	18	48473378	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1151217	48473378	29603870	368	91913											
DCC	1630	broad.mit.edu	37	chr18	50734081	50734081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggactatcttataaactGgaaggcctgaaaaaattcac	8	7	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50734081	T	T	50734081	2	4	90	1	0	0	0	0	0	0	0	1	4315	1335	47	2		2	DCC	18	50734081	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2260703	50734081	27343167	369	91914											
ALPK2	115701	broad.mit.edu	37	chr18	56203480	56203480	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggctcttcgcctttatgGctttctctgctatcagcaag	10	11	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56203480	A	A	56203480	2	1	90	1	0	0	0	0	0	0	0	1	545	1194	42	4		4	ALPK2	18	56203480	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5469399	56203480	21873768	370	91915											
MALT1	10892	broad.mit.edu	37	chr18	56401451	56401451	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatgtattctaaaaaactGttgtattttctcattattta	3	4	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56401451	A	A	56401451	1	1	90	0	1	0	0	0	0	0	0	0	9294	1392	48	4		4	MALT1	18	56401451	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	197971	56401451	21675797	371	91916											
FBXO15	201456	broad.mit.edu	37	chr18	71740732	71740732	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaccaatggttgatttttgcGatactaagataaaggaccag	9	6	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71740732	A	A	71740732	2	1	90	1	0	0	0	0	0	0	0	1	5785	1048	37	4		4	FBXO15	18	71740732	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	15339281	71740732	6336516	372	91917											
CTDP1	9150	broad.mit.edu	37	chr18	77473137	77473137	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatctcagacgagaaagaaAggtgggtaacctccttcctg	11	9	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77473137	T	T	77473137	3	4	90	1	0	0	0	0	1	0	0	0	4036	86	3	5	1055	5	CTDP1	18	77473137	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	5732405	77473137	604111	373	91918											
CHAF1A	10036	broad.mit.edu	37	chr19	4423914	4423914	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgggtttcagctctgctAgacttttcctttctgaaagt	8	8	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4423914	G	G	4423914	1	3	90	0	1	0	0	0	0	0	0	0	3342	435	15	5		5	CHAF1A	19	4423914	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08		4423914	54705069	374	91919											
FBN3	84467	broad.mit.edu	37	chr19	8159411	8159411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttctggcaagtgccggGtaggcaggttcctgcaaggc	17	9	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8159411	T	T	8159411	3	4	90	1	0	0	0	0	1	0	0	0	5761	1261	44	3	2677	3	FBN3	19	8159411	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	3735497	8159411	50969572	375	91920											
MUC16	94025	broad.mit.edu	37	chr19	9007836	9007836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagcccagagctccgatGggtgaaacctgcatagggaa	15	9	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9007836	T	T	9007836	3	4	90	1	0	0	0	0	1	0	0	0	10067	1348	47	2	4307	2	MUC16	19	9007836	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	848425	9007836	50121147	376	91921											
ZNF44	51710	broad.mit.edu	37	chr19	12383596	12383596	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagtcctttcatggcgacAaaagtatttaaaagaactaa	8	6	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12383596	C	C	12383596	3	2	90	1	0	0	0	0	1	0	0	0	18039	130	5	5	377	5	ZNF44	19	12383596	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	3375760	12383596	46745387	377	91922											
SLC1A6	6511	broad.mit.edu	37	chr19	15064916	15064916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaccgcttaagtctcacCtgctggcaggtcctacccaa	9	14	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15064916	A	A	15064916	1	1	90	0	1	0	0	0	0	0	0	0	14549	696	24	2		2	SLC1A6	19	15064916	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2681320	15064916	44064067	378	91923											
CPAMD8	27151	broad.mit.edu	37	chr19	17091488	17091488	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacagaaaaataggcttcTtccccaacctatggaagaca	6	11	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17091488	C	C	17091488	2	2	90	1	0	0	0	0	0	0	0	1	3827	1606	56	5		5	CPAMD8	19	17091488	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	2026572	17091488	42037495	379	91924											
UNC13A	23025	broad.mit.edu	37	chr19	17763424	17763424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcttcctcccaccgctcaCagtttcattacttacccgcc	3	18	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17763424	A	A	17763424	1	1	90	0	1	0	0	0	0	0	0	0	17110	493	17	3		3	UNC13A	19	17763424	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	671936	17763424	41365559	380	91925											
LRRC25	126364	broad.mit.edu	37	chr19	18507421	18507421	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgccaggactccagggcaCagttgcagtcggcctgcagg	15	13	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18507421	T	T	18507421	3	4	90	1	0	0	0	0	1	0	0	0	9067	478	17	4	572	4	LRRC25	19	18507421	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	743997	18507421	40621562	381	91926											
ZNF85	7639	broad.mit.edu	37	chr19	21132503	21132503	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataagataattcatactggaGagaaaccttacaaatgtaaa	6	5	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21132503	A	A	21132503	3	1	90	1	0	0	0	0	1	0	0	0	18322	943	33	4	1197	4	ZNF85	19	21132503	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2625082	21132503	37996480	382	91927											
ZNF492	57615	broad.mit.edu	37	chr19	22836811	22836811	+	Frame_Shift_Del	DEL	C	-	-													gacatgagatggtagctgaaCccccaggtaggtgagagtga							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22836811	-	-	22836811	7	5	90	1	0	1	0	1	0	0	0	0	18070	507	18	0	130	0	ZNF492	19	22836811	Frame_Shift_Del	DEL	C	TCGA-17-Z061-01A-01W-0747-08	1704308	22836811	36292172	383	91928											
CD22	933	broad.mit.edu	37	chr19	35828522	35828522	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagggggaagctgagagccGagttaggaggctgtgaccat	19	6	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35828522	T	T	35828522	1	4	90	0	1	0	0	0	0	0	0	0	3015	1073	37	3		3	CD22	19	35828522	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	12991711	35828522	23300461	384	91929											
SPTBN4	57731	broad.mit.edu	37	chr19	41009825	41009825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgcggcctacgaggagcGggtgcagggtgtggcggagc	20	9	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41009825	T	T	41009825	3	4	90	1	0	0	0	0	1	0	0	0	15239	1116	39	1	1493	1	SPTBN4	19	41009825	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5181303	41009825	18119158	385	91930											
CYP2F1	1572	broad.mit.edu	37	chr19	41628047	41628047	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatggcagaggtaatcccTacctggaaatcccacctcta	8	12	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41628047	C	C	41628047	1	2	90	0	1	0	0	0	0	0	0	0	4204	1537	53	5		5	CYP2F1	19	41628047	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	618222	41628047	17500936	386	91931											
LYPD5	284348	broad.mit.edu	37	chr19	44302658	44302658	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcggtctggtcctggtgacActggactcgtcgggacctgc	16	12	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44302658	T	T	44302658	3	4	90	1	0	0	0	0	1	0	0	0	9201	159	6	5	297	5	LYPD5	19	44302658	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	2674611	44302658	14826325	387	91932											
PPP5C	5536	broad.mit.edu	37	chr19	46891774	46891774	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtggaggcagacagtcacCctgaacccctgtctctccct	10	15	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46891774	G	G	46891774	1	3	90	0	1	0	0	0	0	0	0	0	12507	638	22	4		4	PPP5C	19	46891774	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2589116	46891774	12237209	388	91933											
C19orf41	126123	broad.mit.edu	37	chr19	50662748	50662748	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attggtggagagatatgctgCaccttttaattcatatgaaa	9	5	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50662748	T	T	50662748	1	4	90	0	1	0	0	0	0	0	0	0	1943	725	25	4		4	C19orf41	19	50662748	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3770974	50662748	8466235	389	91934											
LILRB4	11006	broad.mit.edu	37	chr19	55177521	55177521	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatctagaaagaagaaaaTgaatgagggagtaatggaag	12	1	1	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55177521	C	C	55177521	1	2	90	0	1	0	0	0	0	0	0	0	8865	1479	51	5		5	LILRB4	19	55177521	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	4514773	55177521	3951462	390	91935											
ZNF543	125919	broad.mit.edu	37	chr19	57839445	57839445	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tataaatgtgaggaatgcggGaaagtgtttaaaaagaatgc	12	2	0	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57839445	C	C	57839445	2	2	90	1	0	0	0	0	0	0	0	1	18103	1161	41	4		4	ZNF543	19	57839445	Silent	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2661924	57839445	1289538	391	91936											
ZNF324B	388569	broad.mit.edu	37	chr19	58967159	58967159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcacccacaccggggagcGgccctacgagtgcacccagt	12	17	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58967159	T	T	58967159	3	4	90	1	0	0	0	0	1	0	0	0	17971	1116	39	1	858	1	ZNF324B	19	58967159	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1127714	58967159	161824	392	91937											
SIRPA	140885	broad.mit.edu	37	chr20	1915232	1915232	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgatatgcagttgtatttCtgttatgagtccttcgttca	8	6	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1915232	T	T	1915232	1	4	90	0	1	0	0	0	0	0	0	0	14445	928	32	4		4	SIRPA	20	1915232	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08		1915232	61110288	393	91938											
SEL1L2	80343	broad.mit.edu	37	chr20	13868528	13868528	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagatgcattcttaatattCaagacaatgctgtatttatg	6	6	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13868528	T	T	13868528	1	4	90	0	1	0	0	0	0	0	0	0	14124	841	29	4		4	SEL1L2	20	13868528	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	11953296	13868528	49156992	394	91939											
C20orf114	92747	broad.mit.edu	37	chr20	31892648	31892648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcacaggcatcttccattGcagctctgatcggatccagc	8	14	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31892648	T	T	31892648	1	4	90	0	1	0	0	0	0	0	0	0	2104	1334	46	3		3	C20orf114	20	31892648	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	18024120	31892648	31132872	395	91940											
BPI	671	broad.mit.edu	37	chr20	36959265	36959265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggtcaacggcactaaCaatgcagggaatgtgtgaat	14	6	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36959265	A	A	36959265	1	1	90	0	1	0	0	0	0	0	0	0	1499	493	17	3		3	BPI	20	36959265	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5066617	36959265	26066255	396	91941											
CHD6	84181	broad.mit.edu	37	chr20	40179896	40179896	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctccccttgttgaaaaagCaccaagatacccggatgcat	8	12	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40179896	G	G	40179896	1	3	90	0	1	0	0	0	0	0	0	0	3360	725	25	4		4	CHD6	20	40179896	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3220631	40179896	22845624	397	91942											
PTPRT	11122	broad.mit.edu	37	chr20	40733347	40733347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatggcatcgtgcacaaaCacatattgctcctgcaaagt	9	10	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40733347	A	A	40733347	2	1	90	1	0	0	0	0	0	0	0	1	12920	465	17	3		3	PTPRT	20	40733347	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	553451	40733347	22292173	398	91943											
NCOA3	8202	broad.mit.edu	37	chr20	46265192	46265192	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaccggattttgcacaagTtgctgcagaatgggaattca	11	8	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46265192	G	G	46265192	3	3	90	1	0	0	0	0	1	0	0	0	10325	1722	60	5	2130	5	NCOA3	20	46265192	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	5531845	46265192	16760328	399	91944											
SYCP2	10388	broad.mit.edu	37	chr20	58467212	58467212	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatatcagcgattcttcaaTtgtcttatttaggagaaccg	7	7	4	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58467212	C	C	58467212	3	2	90	1	0	0	0	0	1	0	0	0	15551	1493	52	5	2483	5	SYCP2	20	58467212	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	12202020	58467212	4558308	400	91945											
CDH26	60437	broad.mit.edu	37	chr20	58571120	58571120	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctggcaggtcagtggtcTgtaggggtgtcctgggactg	18	8	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58571120	A	A	58571120	1	1	90	0	1	0	0	0	0	0	0	0	3140	1595	55	5		5	CDH26	20	58571120	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	103908	58571120	4454400	401	91946											
CLDN14	23562	broad.mit.edu	37	chr21	37833396	37833396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgcagtggtcgtggtggCcctgggcggggcctggtagg	21	8	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37833396	A	A	37833396	3	1	90	1	0	0	0	0	1	0	0	0	3506	739	26	3	125	3	CLDN14	21	37833396	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08		37833396	10296499	402	91947											
TTC3	7267	broad.mit.edu	37	chr21	38480859	38480859	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atatgaaattacgtagagctCcagaatgtgaaaggggagtc	12	5	0	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38480859	T	T	38480859	1	4	90	0	1	0	0	0	0	0	0	0	16823	870	30	4		4	TTC3	21	38480859	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	647463	38480859	9649036	403	91948											
RSPH1	89765	broad.mit.edu	37	chr21	43892897	43892897	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaacgacagaagcattcttAtgatacgatctcctctcggc	7	12	3	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43892897	G	G	43892897	1	3	90	0	1	0	0	0	0	0	0	0	13813	464	16	5		5	RSPH1	21	43892897	3'UTR	SNP	A	TCGA-17-Z061-01A-01W-0747-08	5412038	43892897	4236998	404	91949											
GAB4	128954	broad.mit.edu	37	chr22	17491195	17491195	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccaaggtctagcctgccCaggatgttggctttgatgac	12	12	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17491195	T	T	17491195	1	4	90	0	1	0	0	0	0	0	0	0	6211	609	21	4		4	GAB4	22	17491195	5'Flank	SNP	C	TCGA-17-Z061-01A-01W-0747-08		17491195	33813371	405	91950											
SMARCB1	6598	broad.mit.edu	37	chr22	24145680	24145680	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggaacagtcccgtttcCtgccagctgcctgtcaggca	12	14	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24145680	G	G	24145680	1	3	90	0	1	0	0	0	0	0	0	0	14888	696	24	4		4	SMARCB1	22	24145680	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	6654485	24145680	27158886	406	91951											
AP1B1	162	broad.mit.edu	37	chr22	29735760	29735760	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccccttcaggctcatcccCcatctccaagcagaagcagg	7	17	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29735760	T	T	29735760	3	4	90	1	0	0	0	0	1	0	0	0	733	623	22	4	883	4	AP1B1	22	29735760	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	5590080	29735760	21568806	407	91952											
L3MBTL2	83746	broad.mit.edu	37	chr22	41620862	41620862	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggtccattccgggcctgAgggacctggctcttcccctg	13	14	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41620862	G	G	41620862	1	3	90	0	1	0	0	0	0	0	0	0	8664	319	11	5		5	L3MBTL2	22	41620862	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	11885102	41620862	9683704	408	91953											
SAPS2	9701	broad.mit.edu	37	chr22	50861843	50861843	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagagactccagcagtggCctcactgctcacagggccta	10	16	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50861843	T	T	50861843	1	4	90	0	1	0	0	0	0	0	0	0	13949	754	26	4		4	SAPS2	22	50861843	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	9240981	50861843	442723	409	91954											
FRMPD4	9758	broad.mit.edu	37	chrX	12725741	12725742	+	Missense_Mutation	DNP	CG	AA	AA													ccgaggaggagagcttggtgCgggtagaactccacgtgcta							TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	12725742	AA	AA	12725741	3	1	90	1	0	0	0	0	1	0	0	0	6119	759	27	3	1491	3	FRMPD4	23	12725741	Missense_Mutation	DNP	CG	TCGA-17-Z061-01A-01W-0747-08		12725741	142544819	410	91955											
FAM9C	171484	broad.mit.edu	37	chrX	13061755	13061755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaagccacgaaggggccGggggcctcgggctgcccatg	16	14	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13061755	T	T	13061755	1	4	90	0	1	0	0	0	0	0	0	0	5718	1131	39	1		1	FAM9C	23	13061755	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	336014	13061755	142208805	411	91956											
PIR	8544	broad.mit.edu	37	chrX	15403297	15403297	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatattttcctctaccactaGaaatgatatatatttctgta	3	7	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15403297	C	C	15403297	1	2	90	0	1	0	0	0	0	0	0	0	12039	957	33	4		4	PIR	23	15403297	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	2341542	15403297	139867263	412	91957											
CXorf23	256643	broad.mit.edu	37	chrX	19984178	19984178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttataccaaattacccaGgtttaatgttttcctatacc	4	10	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19984178	T	T	19984178	1	4	90	0	1	0	0	0	0	0	0	0	4136	1015	35	2		2	CXorf23	23	19984178	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4580881	19984178	135286382	413	91958											
FAM48B1	100130302	broad.mit.edu	37	chrX	24382882	24382882	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcaggcatcttctccaGcaccccttcagtttttccta	6	15	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24382882	C	C	24382882	3	2	90	1	0	0	0	0	1	0	0	0	5624	971	34	4	2007	4	FAM48B1	23	24382882	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4398704	24382882	130887678	414	91959											
POLA1	5422	broad.mit.edu	37	chrX	24761476	24761476	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgaattggttttctcCcagtattaaggaatttctta	9	6	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24761476	T	T	24761476	1	4	90	0	1	0	0	0	0	0	0	0	12282	638	22	4		4	POLA1	23	24761476	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	378594	24761476	130509084	415	91960											
POLA1	5422	broad.mit.edu	37	chrX	24762795	24762795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataaattactctaccaggCgcggtggctcacgcctgtaa	10	11	2	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24762795	A	A	24762795	1	1	90	0	1	0	0	0	0	0	0	0	12282	783	27	3		3	POLA1	23	24762795	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	1319	24762795	130507765	416	91961											
MAGEB4	4115	broad.mit.edu	37	chrX	30261205	30261205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagagagagctggagcccGgcccagagttgcagccaggc	16	11	0	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30261205	T	T	30261205	3	4	90	1	0	0	0	0	1	0	0	0	9270	1116	39	1	955	1	MAGEB4	23	30261205	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	5498410	30261205	125009355	417	91962											
FAM47C	442444	broad.mit.edu	37	chrX	37028942	37028942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccggagcctaccaagaccgGagcgtcccatctaaaagaac	9	15	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37028942	T	T	37028942	3	4	90	1	0	0	0	0	1	0	0	0	5622	1174	41	3	2461	3	FAM47C	23	37028942	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	6767737	37028942	118241618	418	91963											
SYTL5	94122	broad.mit.edu	37	chrX	37984474	37984474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaggaaaatcaaatagAcacatcacacttgtgtacac	8	8	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37984474	G	G	37984474	1	3	90	0	1	0	0	0	0	0	0	0	15605	290	10	5		5	SYTL5	23	37984474	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	955532	37984474	117286086	419	91964											
HUWE1	10075	broad.mit.edu	37	chrX	53579262	53579262	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggatgacctgggcatacaCggaactcacccgcaagggga	13	12	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53579262	G	G	53579262	1	3	90	0	1	0	0	0	0	0	0	0	7531	551	19	4		4	HUWE1	23	53579262	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	15594788	53579262	101691298	420	91965											
HUWE1	10075	broad.mit.edu	37	chrX	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-													gggccagggccggggccgggGccggggccggggccggggcc					rs78801842	by1000genomes	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652829	6	5	90	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652829	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	TCGA-17-Z061-01A-01W-0747-08	73567	53652829	101617731	421	91966											
PFKFB1	5207	broad.mit.edu	37	chrX	55020235	55020235	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagttgttcatctattccaActtttaggttgaggtaggag	10	7	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55020235	G	G	55020235	1	3	90	0	1	0	0	0	0	0	0	0	11855	58	2	5		5	PFKFB1	23	55020235	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1367406	55020235	100250325	422	91967											
FOXR2	139628	broad.mit.edu	37	chrX	55650340	55650340	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcagaagaggagacccAgtcctgatggagatggtcct	13	10	1	5			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55650340	T	T	55650340	3	4	90	1	0	0	0	0	1	0	0	0	6092	188	7	5	198	5	FOXR2	23	55650340	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	630105	55650340	99620220	423	91968											
RRAGB	10325	broad.mit.edu	37	chrX	55755677	55755677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgctttgcttattttgaAtttcacttcacctgttataa	5	7	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55755677	G	G	55755677	1	3	90	0	1	0	0	0	0	0	0	0	13784	116	4	5		5	RRAGB	23	55755677	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	105337	55755677	99514883	424	91969											
UBQLN2	29978	broad.mit.edu	37	chrX	56591354	56591354	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaatagttccagcaatgctActgggaacaccgttgctgcc	10	12	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56591354	G	G	56591354	3	3	90	1	0	0	0	0	1	0	0	0	17023	391	14	5	1050	5	UBQLN2	23	56591354	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	835677	56591354	98679206	425	91970											
DLG3	1741	broad.mit.edu	37	chrX	69698992	69698992	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatcttttcccttgtttcCgtgacagaatacagtcgctt	6	13	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69698992	T	T	69698992	1	4	90	0	1	0	0	0	0	0	0	0	4596	667	23	4		4	DLG3	23	69698992	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	13107638	69698992	85571568	426	91971											
OGT	8473	broad.mit.edu	37	chrX	70793528	70793528	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctagccctctgttcaacAccaaacaatacacaatggaa	4	12	3	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70793528	G	G	70793528	3	3	90	1	0	0	0	0	1	0	0	0	10942	159	6	5	3111	5	OGT	23	70793528	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1094536	70793528	84477032	427	91972											
MAGEE1	57692	broad.mit.edu	37	chrX	75649783	75649784	+	Missense_Mutation	DNP	CC	AA	AA													ggttgcaattaccctgaagcCccaagaccctatggaacaga					rs143682541	byFrequency	TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	75649784	AA	AA	75649783	3	1	90	1	0	0	0	0	1	0	0	0	9277	623	22	2	1462	2	MAGEE1	23	75649783	Missense_Mutation	DNP	CC	TCGA-17-Z061-01A-01W-0747-08	4856255	75649783	79620777	428	91973											
CYLC1	1538	broad.mit.edu	37	chrX	83128938	83128938	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaattacattctctactGattctgaatctgaactggag	7	7	3	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83128938	T	T	83128938	3	4	90	1	0	0	0	0	1	0	0	0	4174	1290	45	3	1236	3	CYLC1	23	83128938	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	7479155	83128938	72141622	429	91974											
DIAPH2	1730	broad.mit.edu	37	chrX	96212914	96212914	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccgcctccaccaccacccGcgccacctctacccggagga	9	22	1	0	rs149470789		TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96212914	C	C	96212914	3	2	90	1	0	0	0	0	1	0	0	0	4559	1087	38	4	1764	4	DIAPH2	23	96212914	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	13083976	96212914	59057646	430	91975											
TRMT2B	79979	broad.mit.edu	37	chrX	100276997	100276997	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaagccacaggctgctcCaggacctctgatgaaaaatt	10	11	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100276997	G	G	100276997	3	3	90	1	0	0	0	0	1	0	0	0	16691	603	21	4	727	4	TRMT2B	23	100276997	Missense_Mutation	SNP	C	TCGA-17-Z061-01A-01W-0747-08	4064083	100276997	54993563	431	91976											
TEX13A	56157	broad.mit.edu	37	chrX	104463999	104463999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggcagggagctggacagGaagaggttctgatgaggctc	18	6	1	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104463999	T	T	104463999	3	4	90	1	0	0	0	0	1	0	0	0	15898	1165	41	3	356	3	TEX13A	23	104463999	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	4187002	104463999	50806561	432	91977											
NRK	203447	broad.mit.edu	37	chrX	105181439	105181439	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatatgaacaggagtcaatTtgctgttgggaacccgatct	10	7	2	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105181439	A	A	105181439	3	1	90	1	0	0	0	0	1	0	0	0	10750	1838	64	5	3750	5	NRK	23	105181439	Missense_Mutation	SNP	T	TCGA-17-Z061-01A-01W-0747-08	717440	105181439	50089121	433	91978											
DOCK11	139818	broad.mit.edu	37	chrX	117722182	117722182	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggaggttgaagagtttgtTccagaaatgacaaaatattg	12	3	0	4			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117722182	A	A	117722182	2	1	90	1	0	0	0	0	0	0	0	1	4726	1770	62	5		5	DOCK11	23	117722182	Silent	SNP	T	TCGA-17-Z061-01A-01W-0747-08	12540743	117722182	37548378	434	91979											
ZCCHC12	170261	broad.mit.edu	37	chrX	117960045	117960045	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgatgaggatgtgatcctgGtggagtctcaggaccctcca	13	11	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117960045	A	A	117960045	3	1	90	1	0	0	0	0	1	0	0	0	17707	1261	44	4	840	4	ZCCHC12	23	117960045	Missense_Mutation	SNP	G	TCGA-17-Z061-01A-01W-0747-08	237863	117960045	37310515	435	91980											
ATP1B4	23439	broad.mit.edu	37	chrX	119509050	119509050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagacttcctagagggatGgctgccgatgaaggctgttg	16	7	0	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119509050	T	T	119509050	1	4	90	0	1	0	0	0	0	0	0	0	1139	1363	47	2		2	ATP1B4	23	119509050	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	1549005	119509050	35761510	436	91981											
GRIA3	2892	broad.mit.edu	37	chrX	122387465	122387465	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttcctcagcttatgtgcCctttgcttccaataaataaa	4	11	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122387465	T	T	122387465	1	4	90	0	1	0	0	0	0	0	0	0	6835	638	22	4		4	GRIA3	23	122387465	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	2878415	122387465	32883095	437	91982											
STAG2	10735	broad.mit.edu	37	chrX	123202405	123202405	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaagttaatgttaaatTttttcaaggaggacttgctg	8	3	1	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123202405	A	A	123202405	1	1	90	0	1	0	0	0	0	0	0	0	15361	1856	64	5		5	STAG2	23	123202405	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	814940	123202405	32068155	438	91983											
ENOX2	10495	broad.mit.edu	37	chrX	129822756	129822756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacatctatgaagcccttGggtattcttttgagaaagaa	8	7	2	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129822756	T	T	129822756	1	4	90	0	1	0	0	0	0	0	0	0	5169	1363	47	2		2	ENOX2	23	129822756	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	6620351	129822756	25447804	439	91984											
GPC3	2719	broad.mit.edu	37	chrX	132833890	132833890	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaatacaattgttaattgTattgtggaataaagaaaaaa	6	1	0	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132833890	C	C	132833890	1	2	90	0	1	0	0	0	0	0	0	0	6664	1653	57	5		5	GPC3	23	132833890	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	3011134	132833890	22436670	440	91985											
ATP11C	286410	broad.mit.edu	37	chrX	138870531	138870531	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaacaaaataatgattaTtatttttaatttgatcaccc	3	7	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138870531	C	C	138870531	1	2	90	0	1	0	0	0	0	0	0	0	1125	1508	52	5		5	ATP11C	23	138870531	Intron	SNP	T	TCGA-17-Z061-01A-01W-0747-08	6036641	138870531	16400029	441	91986											
ATP11C	286410	broad.mit.edu	37	chrX	138901644	138901644	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacttgaaaaatcttaatAgtaatgactgattatgggtc	7	4	1	3			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138901644	T	T	138901644	1	4	90	0	1	0	0	0	0	0	0	0	1125	435	15	5		5	ATP11C	23	138901644	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	31113	138901644	16368916	442	91987											
IDS	3423	broad.mit.edu	37	chrX	148585657	148585657	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtgcacgaagcagcacAcacccacagctagaggttcc	9	15	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148585657	T	T	148585657	1	4	90	0	1	0	0	0	0	0	0	0	7573	174	6	5		5	IDS	23	148585657	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	9684013	148585657	6684903	443	91988											
MAGEA6	4105	broad.mit.edu	37	chrX	151869823	151869823	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctgatggaagtggacccCatcggccacgtgtacatctt	12	11	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151869823	T	T	151869823	2	4	90	1	0	0	0	0	0	0	0	1	9260	581	21	4		4	MAGEA6	23	151869823	Silent	SNP	C	TCGA-17-Z061-01A-01W-0747-08	3284166	151869823	3400737	444	91989											
ZNF185	7739	broad.mit.edu	37	chrX	152097111	152097111	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactgggtctctcctttgGcccgcagctcaagaggtgag	12	14	2	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152097111	T	T	152097111	1	4	90	0	1	0	0	0	0	0	0	0	17878	1218	42	3		3	ZNF185	23	152097111	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	227288	152097111	3173449	445	91990											
ZNF275	10838	broad.mit.edu	37	chrX	152613207	152613207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacgcatgcggcgagtgtgGcaaggccttccgtgggccct	15	13	0	0			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152613207	T	T	152613207	1	4	90	0	1	0	0	0	0	0	0	0	17936	1218	42	3		3	ZNF275	23	152613207	Intron	SNP	G	TCGA-17-Z061-01A-01W-0747-08	516096	152613207	2657353	446	91991											
FAM50A	9130	broad.mit.edu	37	chrX	153674843	153674843	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtccttcaccctggaggAggaagaagagggaggcgagg	17	9	1	2			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153674843	T	T	153674843	3	4	90	1	0	0	0	0	1	0	0	0	5628	304	11	5	391	5	FAM50A	23	153674843	Missense_Mutation	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1061636	153674843	1595717	447	91992											
F8	2157	broad.mit.edu	37	chrX	154189310	154189310	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatatttatctcatctgtatCtacaggtaaaaaagagctat	6	6	3	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154189310	A	A	154189310	1	1	90	0	1	0	0	0	0	0	0	0	5393	928	32	3		3	F8	23	154189310	Intron	SNP	C	TCGA-17-Z061-01A-01W-0747-08	514467	154189310	1081250	448	91993											
IL9R	3581	broad.mit.edu	37	chrX	155235708	155235708	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggggggagcctcctggcActgaggctgctcacagccct	14	13	1	1			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155235708	C	C	155235708	1	2	90	0	1	0	0	0	0	0	0	0	7778	174	6	5		5	IL9R	23	155235708	Intron	SNP	A	TCGA-17-Z061-01A-01W-0747-08	1046398	155235708	34852	449	91994											
KIAA0495	57212	broad.mit.edu	37	chr1	3662521	3662521	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaacactgaaaggtggcCggtggaggcagatggtgttg	18	5	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3662521	T	T	3662521	3	4	91	1	0	0	0	0	1	0	0	0	8250	652	23	4	366	4	KIAA0495	1	3662521	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08		3662521	245588100	1	91995											
NPHP4	261734	broad.mit.edu	37	chr1	6007107	6007107	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcatgcccactacatttaTcctcacacacagagttcacc	3	15	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6007107	A	A	6007107	1	1	91	0	1	0	0	0	0	0	0	0	10676	1450	50	5		5	NPHP4	1	6007107	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2344586	6007107	243243514	2	91996											
UTS2	10911	broad.mit.edu	37	chr1	7910884	7910884	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattttacctgctttcctgaGaatatcccctctttctgcac	4	14	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7910884	T	T	7910884	3	4	91	1	0	0	0	0	1	0	0	0	17231	942	33	3	184	3	UTS2	1	7910884	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1903777	7910884	241339737	3	91997											
AADACL3	126767	broad.mit.edu	37	chr1	12776440	12776440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttctagctgaatgaacaCcggtatcatggggcctgcag	12	10	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12776440	A	A	12776440	1	1	91	0	1	0	0	0	0	0	0	0	12	522	18	3		3	AADACL3	1	12776440	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4865556	12776440	236474181	4	91998											
PRAMEF1	65121	broad.mit.edu	37	chr1	12854069	12854069	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactttacccacaggaggtGgaaacttcaagtgctggatt	10	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12854069	A	A	12854069	4	1	91	1	0	0	0	0	0	1	0	0	12526	1357	47	4	299	4	PRAMEF1	1	12854069	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	77629	12854069	236396552	5	91999											
KAZ	23254	broad.mit.edu	37	chr1	15438970	15438970	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttggaacgccccctggcaGggcctccagcgtcacgcggg	14	15	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15438970	C	C	15438970	3	2	91	1	0	0	0	0	1	0	0	0	8058	1000	35	4	2406	4	KAZ	1	15438970	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2584901	15438970	233811651	6	92000											
SPEN	23013	broad.mit.edu	37	chr1	16260605	16260605	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattacctctgttattagcCggatgcctgtcagcattgac	8	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16260605	G	G	16260605	3	3	91	1	0	0	0	0	1	0	0	0	15156	643	23	4	7912	4	SPEN	1	16260605	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	821635	16260605	232990016	7	92001											
CLCNKA	1187	broad.mit.edu	37	chr1	16351353	16351353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgtctctttctcctcaGgcttctcccagagcatcacg	6	18	5	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16351353	T	T	16351353	3	4	91	1	0	0	0	0	1	0	0	0	3500	1000	35	2	335	2	CLCNKA	1	16351353	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	90748	16351353	232899268	8	92002											
PADI1	29943	broad.mit.edu	37	chr1	17555220	17555220	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagatcaagttctatgtGgaggggctgaccttccccga	13	10	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17555220	T	T	17555220	2	4	91	1	0	0	0	0	0	0	0	1	11471	1335	47	2		2	PADI1	1	17555220	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1203867	17555220	231695401	9	92003											
UBR4	23352	broad.mit.edu	37	chr1	19486759	19486759	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtctaacacgagaggaGcgaaggagaaattggcctga	14	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19486759	A	A	19486759	3	1	91	1	0	0	0	0	1	0	0	0	17030	971	34	4	10400	4	UBR4	1	19486759	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1931539	19486759	229763862	10	92004											
SEPN1	57190	broad.mit.edu	37	chr1	26135289	26135289	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggcaaggaggtgaggacAgctggggtgcgacgtggggc	22	6	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26135289	T	T	26135289	1	4	91	0	1	0	0	0	0	0	0	0	14169	203	7	5		5	SEPN1	1	26135289	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	6648530	26135289	223115332	11	92005											
AIM1L	55057	broad.mit.edu	37	chr1	26663815	26663815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccagtctgggtattcccCctcctccagcagatactggt	9	14	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26663815	A	A	26663815	3	1	91	1	0	0	0	0	1	0	0	0	431	623	22	2	1329	2	AIM1L	1	26663815	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	528526	26663815	222586806	12	92006											
GMEB1	10691	broad.mit.edu	37	chr1	29037045	29037045	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaatagatgctgctgttctCaacaatgtagcacacacatt	6	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29037045	T	T	29037045	2	4	91	1	0	0	0	0	0	0	0	1	6551	813	29	4		4	GMEB1	1	29037045	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2373230	29037045	220213576	13	92007											
PUM1	9698	broad.mit.edu	37	chr1	31405941	31405941	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggaggagggagtaatcCtggagcaaccacttgcccgt	13	9	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31405941	A	A	31405941	1	1	91	0	1	0	0	0	0	0	0	0	12933	696	24	2		2	PUM1	1	31405941	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2368896	31405941	217844680	14	92008											
COL16A1	1307	broad.mit.edu	37	chr1	32154676	32154676	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctttgatgccttggatgCcagggtctccctgcagggta	12	12	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32154676	G	G	32154676	3	3	91	1	0	0	0	0	1	0	0	0	3705	739	26	4	3375	4	COL16A1	1	32154676	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	748735	32154676	217095945	15	92009											
KIAA0467	23334	broad.mit.edu	37	chr1	43896034	43896034	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcagtgacctggagttttCagaggctgagcttatgggag	14	6	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43896034	T	T	43896034	3	4	91	1	0	0	0	0	1	0	0	0	8248	838	29	4	1811	4	KIAA0467	1	43896034	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	11741358	43896034	205354587	16	92010											
ERI3	79033	broad.mit.edu	37	chr1	44773934	44773934	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaaaaggccagacctggtCccacagattccaagccctgc	8	16	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44773934	A	A	44773934	1	1	91	0	1	0	0	0	0	0	0	0	5271	870	30	3		3	ERI3	1	44773934	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	877900	44773934	204476687	17	92011											
STIL	6491	broad.mit.edu	37	chr1	47765719	47765719	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactgctgcccaatgcaagtCaaattccacactgtccaaac	5	14	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47765719	A	A	47765719	3	1	91	1	0	0	0	0	1	0	0	0	15400	826	29	3	3355	3	STIL	1	47765719	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2991785	47765719	201484902	18	92012											
ECHDC2	55268	broad.mit.edu	37	chr1	53370711	53370711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagttgcgattacctgccCccgggaggagccctcgcgtg	14	13	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53370711	A	A	53370711	3	1	91	1	0	0	0	0	1	0	0	0	4934	623	22	2	389	2	ECHDC2	1	53370711	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5604992	53370711	195879910	19	92013											
C8A	731	broad.mit.edu	37	chr1	57340806	57340806	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataacagctgtgcctgtcaAaagtgacatgtgaaacactt	8	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57340806	C	C	57340806	1	2	91	0	1	0	0	0	0	0	0	0	2441	29	1	5		5	C8A	1	57340806	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3970095	57340806	191909815	20	92014											
C8B	732	broad.mit.edu	37	chr1	57422597	57422597	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acctgtactgtagcagagagGagccaggtgaaccaagggta	14	8	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57422597	T	T	57422597	1	4	91	0	1	0	0	0	0	0	0	0	2442	1189	41	3		3	C8B	1	57422597	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	81791	57422597	191828024	21	92015											
INADL	10207	broad.mit.edu	37	chr1	62321679	62321681	+	Intron	DEL	CTT	-	-													tttcagtgcatggactcatcCttcttctttgctcgattcac							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62321681	-	-	62321679	6	5	91	0	1	1	0	1	0	0	0	0	7801	696	24	0		0	INADL	1	62321679	Intron	DEL	CTT	TCGA-17-Z062-01A-01W-0747-08	4899082	62321679	186928942	22	92016											
PDE4B	5142	broad.mit.edu	37	chr1	66713328	66713328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgagaaactcttctcttcCaagcgagcagtaagtacaag	9	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66713328	A	A	66713328	3	1	91	1	0	0	0	0	1	0	0	0	11734	594	21	2	717	2	PDE4B	1	66713328	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4391649	66713328	182537293	23	92017											
LRRC7	57554	broad.mit.edu	37	chr1	70339177	70339177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatccagagtgtgccccttGcccaatcgcctgagactata	9	13	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70339177	T	T	70339177	1	4	91	0	1	0	0	0	0	0	0	0	9107	1334	46	3		3	LRRC7	1	70339177	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3625849	70339177	178911444	24	92018											
LRRC7	57554	broad.mit.edu	37	chr1	70446128	70446128	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataataatgcattacaagtgTtacctggggtatgtaagttt	9	4	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70446128	A	A	70446128	3	1	91	1	0	0	0	0	1	0	0	0	9107	1722	60	5	690	5	LRRC7	1	70446128	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	106951	70446128	178804493	25	92019											
LRRC7	57554	broad.mit.edu	37	chr1	70502311	70502311	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtggggtaacaggtgTgtttagaattccctcctttt	10	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70502311	C	C	70502311	1	2	91	0	1	0	0	0	0	0	0	0	9107	1711	59	5		5	LRRC7	1	70502311	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	56183	70502311	178748310	26	92020											
LRRC7	57554	broad.mit.edu	37	chr1	70542054	70542054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatccatggttggccttccCtcattaatgtggtccaggac	10	11	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70542054	A	A	70542054	1	1	91	0	1	0	0	0	0	0	0	0	9107	696	24	2		2	LRRC7	1	70542054	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	39743	70542054	178708567	27	92021											
SLC44A5	204962	broad.mit.edu	37	chr1	75708783	75708783	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacttctaaattatccaccAtaacaaaaagcaatgcactg	4	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75708783	C	C	75708783	1	2	91	0	1	0	0	0	0	0	0	0	14753	232	8	5		5	SLC44A5	1	75708783	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	5166729	75708783	173541838	28	92022											
SLC44A5	204962	broad.mit.edu	37	chr1	76047884	76047884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacgaatctcttaaggggtGgaccccaagttcctgaggaa	11	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76047884	T	T	76047884	1	4	91	0	1	0	0	0	0	0	0	0	14753	1363	47	2		2	SLC44A5	1	76047884	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	339101	76047884	173202737	29	92023											
PIGK	10026	broad.mit.edu	37	chr1	77685114	77685114	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcttcagacttcccgcacCtgaaggggcggaggcagtgc	15	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77685114	A	A	77685114	1	1	91	1	0	0	0	0	0	0	0	0	11985	696	24	2		2	PIGK	1	77685114	Translation_Start_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1637230	77685114	171565507	30	92024											
ELTD1	64123	broad.mit.edu	37	chr1	79383345	79383345	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattaggcatgctggtcctaTaaaactccaaataaagttgt	8	7	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79383345	C	C	79383345	3	2	91	1	0	0	0	0	1	0	0	0	5126	1406	49	5	365	5	ELTD1	1	79383345	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1698231	79383345	169867276	31	92025											
WDR63	126820	broad.mit.edu	37	chr1	85561704	85561704	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgtatcaatgggcagGtacttaacagaatttttttc	10	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85561704	C	C	85561704	5	2	91	1	0	0	0	0	0	0	1	0	17441	1275	44	4	1302	4	WDR63	1	85561704	Splice_Site	SNP	G	TCGA-17-Z062-01A-01W-0747-08	6178359	85561704	163688917	32	92026											
CLCA2	9635	broad.mit.edu	37	chr1	86905963	86905963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattcactccattgccctgGgttcatctgcagccccaaat	6	15	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86905963	T	T	86905963	3	4	91	1	0	0	0	0	1	0	0	0	3489	1232	43	2	1366	2	CLCA2	1	86905963	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1344259	86905963	162344658	33	92027											
HS2ST1	9653	broad.mit.edu	37	chr1	87511285	87511285	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttgtttattcaaaacAattgttctgcagtggtctat	7	6	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87511285	G	G	87511285	1	3	91	0	1	0	0	0	0	0	0	0	7429	145	5	5		5	HS2ST1	1	87511285	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	605322	87511285	161739336	34	92028											
HFM1	164045	broad.mit.edu	37	chr1	91816380	91816380	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattcacatccgtgatggtAtgcagtactatctctgcatt	7	9	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91816380	G	G	91816380	2	3	91	1	0	0	0	0	0	0	0	1	7150	446	16	5		5	HFM1	1	91816380	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	4305095	91816380	157434241	35	92029											
HFM1	164045	broad.mit.edu	37	chr1	91843574	91843574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagagctcagttaaaattgTaactcacatcctcagcattt	5	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91843574	A	A	91843574	1	1	91	0	1	0	0	0	0	0	0	0	7150	1653	57	5		5	HFM1	1	91843574	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	27194	91843574	157407047	36	92030											
TGFBR3	7049	broad.mit.edu	37	chr1	92200519	92200519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagaaccctcagacacctAgaggaaagagaattgcgtat	9	10	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92200519	G	G	92200519	1	3	91	0	1	0	0	0	0	0	0	0	15946	435	15	5		5	TGFBR3	1	92200519	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	356945	92200519	157050102	37	92031											
LPPR4	9890	broad.mit.edu	37	chr1	99771695	99771695	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctgggcagtcaccacCcagatccatagaaatgaggt	11	11	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771695	T	T	99771695	3	4	91	1	0	0	0	0	1	0	0	0	9014	623	22	4	1447	4	LPPR4	1	99771695	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7571176	99771695	149478926	38	92032											
OLFM3	118427	broad.mit.edu	37	chr1	102302572	102302572	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccacccttctttaggacTaatctgagtctgaggaaacc	8	12	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102302572	A	A	102302572	3	1	91	1	0	0	0	0	1	0	0	0	10949	1522	53	5	1317	5	OLFM3	1	102302572	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2530877	102302572	146948049	39	92033											
COL11A1	1301	broad.mit.edu	37	chr1	103352456	103352456	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatttcatatgctcaatgtCttgtttcagggaattgaggg	10	5	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103352456	A	A	103352456	3	1	91	1	0	0	0	0	1	0	0	0	3699	913	32	3	675	3	COL11A1	1	103352456	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1049884	103352456	145898165	40	92034											
VAV3	10451	broad.mit.edu	37	chr1	108116593	108116593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtatagaggcttctccctGgtgccacaatgggtgcaaac	11	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108116593	T	T	108116593	1	4	91	0	1	0	0	0	0	0	0	0	17260	1363	47	2		2	VAV3	1	108116593	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4764137	108116593	141134028	41	92035											
VAV3	10451	broad.mit.edu	37	chr1	108247587	108247587	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actgagcaggcttacctcagGagcatctggcagactttgca	11	11	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108247587	A	A	108247587	2	1	91	1	0	0	0	0	0	0	0	1	17260	1161	41	4		4	VAV3	1	108247587	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	130994	108247587	141003034	42	92036											
VAV3	10451	broad.mit.edu	37	chr1	108417743	108417743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgacaagaaagcatcaaGcagcctttgaagttgctttt	8	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108417743	T	T	108417743	1	4	91	0	1	0	0	0	0	0	0	0	17260	986	34	3		3	VAV3	1	108417743	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	170156	108417743	140832878	43	92037											
GSTM5	2949	broad.mit.edu	37	chr1	110260049	110260049	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacatggaacagcaaatagGgcccagtgatgccagaagat	11	9	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110260049	T	T	110260049	1	4	91	0	1	0	0	0	0	0	0	0	6907	1247	43	2		2	GSTM5	1	110260049	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1842306	110260049	138990572	44	92038											
CD53	963	broad.mit.edu	37	chr1	111437624	111437625	+	Missense_Mutation	DNP	CG	AC	AC													gtctgaccgacagcatccacCgttaccactcagacaatagc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	111437625	AC	AC	111437624	3	1	91	1	0	0	0	0	1	0	0	0	3053	652	23	1	384	1	CD53	1	111437624	Missense_Mutation	DNP	CG	TCGA-17-Z062-01A-01W-0747-08	1177575	111437624	137812997	45	92039											
DDX20	11218	broad.mit.edu	37	chr1	112309029	112309029	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacagtgattcttacagctcAagaacctcttcccagagcaa	7	12	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112309029	T	T	112309029	2	4	91	1	0	0	0	0	0	0	0	1	4381	117	5	5		5	DDX20	1	112309029	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	871405	112309029	136941592	46	92040											
MOV10	4343	broad.mit.edu	37	chr1	113232258	113232258	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaccaggagttgccctGtccactgggccccggtgagt	14	12	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113232258	C	C	113232258	3	2	91	1	0	0	0	0	1	0	0	0	9812	1377	48	4	573	4	MOV10	1	113232258	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	923229	113232258	136018363	47	92041											
SLC22A15	55356	broad.mit.edu	37	chr1	116577934	116577934	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taccctctctgtatctacttGattaaccaaaaatggtgagt	6	9	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116577934	A	A	116577934	2	1	91	1	0	0	0	0	0	0	0	1	14559	1281	45	4		4	SLC22A15	1	116577934	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3345676	116577934	132672687	48	92042											
IGSF3	3321	broad.mit.edu	37	chr1	117131683	117131683	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgggcttgttttccacCagggtgagggtcctcttcga	13	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117131683	A	A	117131683	2	1	91	1	0	0	0	0	0	0	0	1	7671	581	21	2		2	IGSF3	1	117131683	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	553749	117131683	132118938	49	92043											
TTF2	8458	broad.mit.edu	37	chr1	117619347	117619347	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctccccacctggtgcctcCccaaccccttcctcgtcgtg	6	23	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117619347	T	T	117619347	3	4	91	1	0	0	0	0	1	0	0	0	16845	623	22	4	1501	4	TTF2	1	117619347	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	487664	117619347	131631274	50	92044											
HAO2	51179	broad.mit.edu	37	chr1	119925704	119925704	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagaggtatgaaccatcccCacctcgaggctcctttccgg	9	15	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119925704	G	G	119925704	1	3	91	0	1	0	0	0	0	0	0	0	7018	609	21	4		4	HAO2	1	119925704	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2306357	119925704	129324917	51	92045											
NOTCH2	4853	broad.mit.edu	37	chr1	120463057	120463057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctccctatcaatctggcCaccaccagaaactgctaatc	5	15	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120463057	A	A	120463057	1	1	91	0	1	0	0	0	0	0	0	0	10643	609	21	2		2	NOTCH2	1	120463057	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	537353	120463057	128787564	52	92046											
NOTCH2	4853	broad.mit.edu	37	chr1	120468434	120468434	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttgccccggaaaatccCtgtggaaatcagtgaggaaa	10	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120468434	A	A	120468434	5	1	91	1	0	0	0	0	0	0	1	0	10643	695	24	2	3450	2	NOTCH2	1	120468434	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5377	120468434	128782187	53	92047											
NOTCH2	4853	broad.mit.edu	37	chr1	120510149	120510149	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcactcattgatgtccatctCacaacgaggtcctgcataac	7	13	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120510149	A	A	120510149	4	1	91	1	0	0	0	0	0	1	0	0	10643	835	29	3	6163	3	NOTCH2	1	120510149	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	41715	120510149	128740472	54	92048											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015970	145015970	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accacttctccagatctgtgActgcactggagggcctcgat	10	13	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145015970	G	G	145015970	3	3	91	1	0	0	0	0	1	0	0	0	11737	275	10	5	8473	5	PDE4DIP	1	145015970	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	24505821	145015970	104234651	55	92049											
NBPF10	100132406	broad.mit.edu	37	chr1	146217021	146217021	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggtttcatgggtagcataAggaagtggttaaaaaaagta	12	2	1	0	rs146388681	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146217021	G	G	146217021	1	3	91	0	1	0	0	0	0	0	0	0	10287	87	3	5		5	NBPF10	1	146217021	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1201051	146217021	103033600	56	92050											
NBPF10	100132406	broad.mit.edu	37	chr1	146217039	146217039	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaggaagtggttaaaaaaaGtaaaaggatagatccattaa	9	2	0	1	rs139739620	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146217039	C	C	146217039	1	2	91	0	1	0	0	0	0	0	0	0	10287	1044	36	4		4	NBPF10	1	146217039	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	18	146217039	103033582	57	92051											
SV2A	9900	broad.mit.edu	37	chr1	149879215	149879215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatcaaggtccacccaaCcctttggtctgacacccacc	5	18	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149879215	A	A	149879215	1	1	91	0	1	0	0	0	0	0	0	0	15535	522	18	3		3	SV2A	1	149879215	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3662176	149879215	99371406	58	92052											
APH1A	51107	broad.mit.edu	37	chr1	150239451	150239451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatgcttttctccctaaCtcaggcccctgtctccaact	4	15	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150239451	A	A	150239451	1	1	91	0	1	0	0	0	0	0	0	0	773	580	20	3		3	APH1A	1	150239451	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	360236	150239451	99011170	59	92053											
ECM1	1893	broad.mit.edu	37	chr1	150482302	150482302	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaatctggcctatatcccActtttcaggtggaaaggagg	10	9	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150482302	T	T	150482302	1	4	91	0	1	0	0	0	0	0	0	0	4937	174	6	5		5	ECM1	1	150482302	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	242851	150482302	98768319	60	92054											
GABPB2	126626	broad.mit.edu	37	chr1	151090006	151090006	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcaaggtaatgtttttagGagtgatgaaaagaatttaaa	10	1	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151090006	T	T	151090006	1	4	91	0	1	0	0	0	0	0	0	0	6219	1189	41	3		3	GABPB2	1	151090006	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	607704	151090006	98160615	61	92055											
RPTN	126638	broad.mit.edu	37	chr1	152127623	152127623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgttggctatcctcttcaGgctcccatacctggtggccg	11	13	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152127623	T	T	152127623	3	4	91	1	0	0	0	0	1	0	0	0	13775	1000	35	2	406	2	RPTN	1	152127623	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1037617	152127623	97122998	62	92056											
FLG	2312	broad.mit.edu	37	chr1	152278890	152278890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccacgggaggcatcagaCcttccctgggatgtggtgtg	15	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152278890	A	A	152278890	3	1	91	1	0	0	0	0	1	0	0	0	5979	506	18	3	3717	3	FLG	1	152278890	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	151267	152278890	96971731	63	92057											
FLG	2312	broad.mit.edu	37	chr1	152281932	152281932	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtccacgaatggtgtcCtgaccctcttgggacgctga	14	11	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281932	T	T	152281932	2	4	91	1	0	0	0	0	0	0	0	1	5979	680	24	4		4	FLG	1	152281932	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3042	152281932	96968689	64	92058											
FLG2	388698	broad.mit.edu	37	chr1	152326246	152326246	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaatctctgtcttccagatGttctggaacctgtctgtgta	8	9	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152326246	A	A	152326246	3	1	91	1	0	0	0	0	1	0	0	0	5980	1377	48	4	3163	4	FLG2	1	152326246	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	44314	152326246	96924375	65	92059											
LCE3D	84648	broad.mit.edu	37	chr1	152552269	152552269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggaagcagccgccctcGgagctagggccacagccccc	12	17	1	0	rs146594158		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152552269	T	T	152552269	2	4	91	1	0	0	0	0	0	0	0	1	8744	1103	39	1		1	LCE3D	1	152552269	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	226023	152552269	96698352	66	92060											
LCE3A	353142	broad.mit.edu	37	chr1	152595480	152595480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacagcccccagagcttgGggcacagctggaggaagctg	14	14	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152595480	T	T	152595480	3	4	91	1	0	0	0	0	1	0	0	0	8741	1232	43	2	172	2	LCE3A	1	152595480	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	43211	152595480	96655141	67	92061											
SPRR1B	6699	broad.mit.edu	37	chr1	153005191	153005191	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccttgcaattagcattctGtctcccccaaaaaagaatgt	6	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153005191	A	A	153005191	1	1	91	0	1	0	0	0	0	0	0	0	15214	1392	48	4		4	SPRR1B	1	153005191	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	409711	153005191	96245430	68	92062											
PGLYRP3	114771	broad.mit.edu	37	chr1	153275173	153275173	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctggattattcctcagcCtctcccaggcctccagcacc	8	17	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153275173	G	G	153275173	1	3	91	0	1	0	0	0	0	0	0	0	11890	696	24	4		4	PGLYRP3	1	153275173	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	269982	153275173	95975448	69	92063											
NUP210L	91181	broad.mit.edu	37	chr1	154002314	154002314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctctttgttgatggtaagAgaatataactttcttatcct	7	6	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154002314	T	T	154002314	1	4	91	0	1	0	0	0	0	0	0	0	10856	319	11	5		5	NUP210L	1	154002314	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	727141	154002314	95248307	70	92064											
SHC1	6464	broad.mit.edu	37	chr1	154936419	154936422	+	Intron	DEL	GGAA	-	-													agtccgaacctgggagggtgGgaaggaagaaggtcaattca							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154936422	-	-	154936419	6	5	91	0	1	1	0	1	0	0	0	0	14383	1247	43	0		0	SHC1	1	154936419	Intron	DEL	GGAA	TCGA-17-Z062-01A-01W-0747-08	934105	154936419	94314202	71	92065											
FLAD1	80308	broad.mit.edu	37	chr1	154956480	154956480	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgacatctagggcctctGaactttctccggggcgcagc	11	14	3	2	rs1054257		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154956480	A	A	154956480	3	1	91	1	0	0	0	0	1	0	0	0	5977	1291	45	4	312	4	FLAD1	1	154956480	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	20061	154956480	94294141	72	92066											
PKLR	5313	broad.mit.edu	37	chr1	155269991	155269991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgccatagcagctggcaGctgctgctgctggaagaagg	15	10	1	1	rs8177962	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155269991	T	T	155269991	3	4	91	1	0	0	0	0	1	0	0	0	12071	962	34	3	1583	3	PKLR	1	155269991	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	313511	155269991	93980630	73	92067											
GON4L	54856	broad.mit.edu	37	chr1	155747565	155747565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcaaatagctccttcaCtgtccgatgttgttcattta	6	10	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155747565	A	A	155747565	3	1	91	1	0	0	0	0	1	0	0	0	6636	565	20	3	4972	3	GON4L	1	155747565	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	477574	155747565	93503056	74	92068											
NTRK1	4914	broad.mit.edu	37	chr1	156845991	156845991	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcaggacaagatgctgGtggctgtcaaggtgagaccc	15	9	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156845991	A	A	156845991	3	1	91	1	0	0	0	0	1	0	0	0	10801	1261	44	4	1801	4	NTRK1	1	156845991	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1098426	156845991	92404630	75	92069											
FCRL5	83416	broad.mit.edu	37	chr1	157488604	157488604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatgtgaatgtttcttaGgaatccagacaaagtagcta	9	5	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157488604	T	T	157488604	1	4	91	0	1	0	0	0	0	0	0	0	5855	1015	35	2		2	FCRL5	1	157488604	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	642613	157488604	91762017	76	92070											
FCRL2	79368	broad.mit.edu	37	chr1	157737268	157737268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcctgggccccaggagaCctgagggtgaggacagggcg	19	11	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157737268	A	A	157737268	3	1	91	1	0	0	0	0	1	0	0	0	5852	506	18	3	639	3	FCRL2	1	157737268	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	248664	157737268	91513353	77	92071											
OR10T2	128360	broad.mit.edu	37	chr1	158368632	158368632	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaacagaaaaggcaccaTaattaccaggatgctgaggc	9	8	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158368632	C	C	158368632	3	2	91	1	0	0	0	0	1	0	0	0	11013	1406	49	5	321	5	OR10T2	1	158368632	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	631364	158368632	90881989	78	92072											
OR6N2	81442	broad.mit.edu	37	chr1	158747483	158747483	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattgagatgactgctgaatCcatgccaaaacttcatttct	7	9	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158747483	A	A	158747483	1	1	91	0	1	0	0	0	0	0	0	0	11301	870	30	3		3	OR6N2	1	158747483	5'Flank	SNP	C	TCGA-17-Z062-01A-01W-0747-08	378851	158747483	90503138	79	92073											
PYHIN1	149628	broad.mit.edu	37	chr1	158946589	158946589	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaaacctgatgccattgGtaatgatgtttatgaagata	8	5	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158946589	T	T	158946589	1	4	91	0	1	0	0	0	0	0	0	0	12973	1276	44	3		3	PYHIN1	1	158946589	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	199106	158946589	90304032	80	92074											
CASQ1	844	broad.mit.edu	37	chr1	160160683	160160683	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtacgatggtgtggacCgtgtgatcaatgtcaatgca	13	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160160683	T	T	160160683	3	4	91	1	0	0	0	0	1	0	0	0	2706	652	23	4	144	4	CASQ1	1	160160683	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1214094	160160683	89089938	81	92075											
POU2F1	5451	broad.mit.edu	37	chr1	167334748	167334748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaagcagcctgtgcctGtaggaggagcaatctcaaca	11	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167334748	T	T	167334748	3	4	91	1	0	0	0	0	1	0	0	0	12367	1377	48	3	109	3	POU2F1	1	167334748	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7174065	167334748	81915873	82	92076											
RCSD1	92241	broad.mit.edu	37	chr1	167654682	167654682	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccagtaaaccaacccgaAggaaaccgccctgttccctc	7	17	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167654682	T	T	167654682	3	4	91	1	0	0	0	0	1	0	0	0	13293	63	3	5	143	5	RCSD1	1	167654682	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	319934	167654682	81595939	83	92077											
F5	2153	broad.mit.edu	37	chr1	169511451	169511451	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtcttcatcagtatcttgGattatttcatagctaccttt	6	8	5	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169511451	T	T	169511451	2	4	91	1	0	0	0	0	0	0	0	1	5391	1164	41	3		3	F5	1	169511451	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1856769	169511451	79739170	84	92078											
SELP	6403	broad.mit.edu	37	chr1	169580950	169580950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggataaagagaaagataCtgagaaaggagaaaagccac	11	5	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169580950	A	A	169580950	1	1	91	0	1	0	0	0	0	0	0	0	14132	580	20	3		3	SELP	1	169580950	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	69499	169580950	79669671	85	92079											
SELE	6401	broad.mit.edu	37	chr1	169702626	169702626	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatgctgccagatatcctgTgcaggacagccccagacaag	12	12	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169702626	A	A	169702626	1	1	91	0	1	0	0	0	0	0	0	0	14126	1711	59	5		5	SELE	1	169702626	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	121676	169702626	79547995	86	92080											
FMO2	2327	broad.mit.edu	37	chr1	171154916	171154916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttctctgaagtgctgtGtggatgagggacttgagccc	13	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171154916	T	T	171154916	3	4	91	1	0	0	0	0	1	0	0	0	6013	1377	48	3	66	3	FMO2	1	171154916	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1452290	171154916	78095705	87	92081											
FMO1	2326	broad.mit.edu	37	chr1	171254341	171254341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatcttccttttataaagGtttggcttgtgctactgcaa	7	9	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171254341	T	T	171254341	3	4	91	1	0	0	0	0	1	0	0	0	6012	1275	44	3	1287	3	FMO1	1	171254341	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	99425	171254341	77996280	88	92082											
C1orf9	51430	broad.mit.edu	37	chr1	172558024	172558024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtccatctacagtgaccCttctgggcagcggtgaacag	11	12	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172558024	T	T	172558024	3	4	91	1	0	0	0	0	1	0	0	0	2089	681	24	4	1853	4	C1orf9	1	172558024	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1303683	172558024	76692597	89	92083											
TNN	63923	broad.mit.edu	37	chr1	175046689	175046689	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtcactgtcagccacacCtacaagatcgatgtgcccaa	8	14	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175046689	T	T	175046689	2	4	91	1	0	0	0	0	0	0	0	1	16446	668	24	4		4	TNN	1	175046689	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2488665	175046689	74203932	90	92084											
TNR	7143	broad.mit.edu	37	chr1	175355468	175355468	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcaaacagaacaaaaaGtttgaatgagaaataagcct	8	5	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175355468	T	T	175355468	1	4	91	0	1	0	0	0	0	0	0	0	16461	1044	36	3		3	TNR	1	175355468	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	308779	175355468	73895153	91	92085											
PAPPA2	60676	broad.mit.edu	37	chr1	176681251	176681251	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgttatctcaaagtgttAatattttgagtttattttca	5	3	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176681251	T	T	176681251	1	4	91	0	1	0	0	0	0	0	0	0	11527	377	13	5		5	PAPPA2	1	176681251	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1325783	176681251	72569370	92	92086											
PAPPA2	60676	broad.mit.edu	37	chr1	176809471	176809471	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaaggcagggtcttcagCtagctctcattcatggtgtg	11	8	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176809471	T	T	176809471	1	4	91	0	1	0	0	0	0	0	0	0	11527	812	28	4		4	PAPPA2	1	176809471	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	128220	176809471	72441150	93	92087											
C1orf125	126859	broad.mit.edu	37	chr1	179364232	179364233	+	Splice_Site	DNP	GG	TT	TT													aatttctttgctttatttcaGggaactgtgtctagttcggg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179364233	TT	TT	179364232	5	4	91	1	0	0	0	0	0	0	1	0	2013	1014	35	2	1042	2	C1orf125	1	179364232	Splice_Site	DNP	GG	TCGA-17-Z062-01A-01W-0747-08	2554761	179364232	69886389	94	92088											
C1orf125	126859	broad.mit.edu	37	chr1	179398593	179398593	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgatatatgaaatcactgtaAtaaattatagtggtttgcta	7	4	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179398593	T	T	179398593	1	4	91	0	1	0	0	0	0	0	0	0	2013	116	4	5		5	C1orf125	1	179398593	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	34361	179398593	69852028	95	92089											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179834019	179834019	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgagagtcatgtattcttTttctaaccagtggaggaccc	9	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179834019	C	C	179834019	1	2	91	0	1	0	0	0	0	0	0	0	16497	1841	64	5		5	TOR1AIP2	1	179834019	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	435426	179834019	69416602	96	92090											
CACNA1E	777	broad.mit.edu	37	chr1	181754359	181754359	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgactgatagcacagaCctgttccagagagtgggtaa	14	7	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181754359	G	G	181754359	1	3	91	0	1	0	0	0	0	0	0	0	2568	522	18	4		4	CACNA1E	1	181754359	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1920340	181754359	67496262	97	92091											
ZNF648	127665	broad.mit.edu	37	chr1	182026294	182026294	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgggagtaggccttcccGcatagctcgcacgcgtagcg	15	13	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182026294	T	T	182026294	4	4	91	1	0	0	0	0	0	1	0	0	18190	1079	38	3	858	3	ZNF648	1	182026294	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	271935	182026294	67224327	98	92092											
HMCN1	83872	broad.mit.edu	37	chr1	186009049	186009049	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttggtgacatttaccacctGattattcagtacaggaagta	8	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186009049	T	T	186009049	1	4	91	0	1	0	0	0	0	0	0	0	7287	1305	45	3		3	HMCN1	1	186009049	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3982755	186009049	63241572	99	92093											
TPR	7175	broad.mit.edu	37	chr1	186287681	186287681	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtagtcaccattggaacaGattgagaggcatgttccgaa	11	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186287681	C	C	186287681	3	2	91	1	0	0	0	0	1	0	0	0	16540	942	33	4	388	4	TPR	1	186287681	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	278632	186287681	62962940	100	92094											
TPR	7175	broad.mit.edu	37	chr1	186292815	186292815	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatgaccagtacttttaaTacctgaactggtggtcccaa	7	9	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186292815	C	C	186292815	1	2	91	0	1	0	0	0	0	0	0	0	16540	1421	49	5		5	TPR	1	186292815	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	5134	186292815	62957806	101	92095											
TPR	7175	broad.mit.edu	37	chr1	186315294	186315294	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatgctctctatggctctTcttttatcatcctgaagttc	5	12	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186315294	C	C	186315294	2	2	91	1	0	0	0	0	0	0	0	1	16540	1780	62	5		5	TPR	1	186315294	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	22479	186315294	62935327	102	92096											
FAM5C	339479	broad.mit.edu	37	chr1	190203565	190203565	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgacagaatctaggttgtCatagttactgcagccaagag	10	8	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190203565	A	A	190203565	3	1	91	1	0	0	0	0	1	0	0	0	5645	826	29	3	1655	3	FAM5C	1	190203565	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3888271	190203565	59047056	103	92097											
FAM5C	339479	broad.mit.edu	37	chr1	190250818	190250819	+	Missense_Mutation	DNP	GG	TT	TT													attcaggggcaagaggcagaGgagagccaaggaaatttctt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	190250819	TT	TT	190250818	3	4	91	1	0	0	0	0	1	0	0	0	5645	1000	35	2	2025	2	FAM5C	1	190250818	Missense_Mutation	DNP	GG	TCGA-17-Z062-01A-01W-0747-08	47253	190250818	58999803	104	92098											
RGS13	6003	broad.mit.edu	37	chr1	192613592	192613592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcagatgataaataggtaCatatttattaaactgctatt	5	4	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192613592	A	A	192613592	1	1	91	0	1	0	0	0	0	0	0	0	13405	493	17	3		3	RGS13	1	192613592	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2362774	192613592	56637029	105	92099											
CFHR3	10878	broad.mit.edu	37	chr1	196762554	196762554	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggataccattgaatttatgTgtaaattgggatataatgca	10	3	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196762554	G	G	196762554	3	3	91	1	0	0	0	0	1	0	0	0	3316	1696	59	5	926	5	CFHR3	1	196762554	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	4148962	196762554	52488067	106	92100											
ASPM	259266	broad.mit.edu	37	chr1	197111989	197111989	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaggattattttgttttaTaaaactgtagtaatttgact	6	2	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197111989	C	C	197111989	3	2	91	1	0	0	0	0	1	0	0	0	1060	1406	49	5	9144	5	ASPM	1	197111989	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	349435	197111989	52138632	107	92101											
KIF21B	23046	broad.mit.edu	37	chr1	200973843	200973843	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcagggccttggaggggtCtgagactgagctgtgtgggt	19	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200973843	A	A	200973843	1	1	91	0	1	0	0	0	0	0	0	0	8359	928	32	3		3	KIF21B	1	200973843	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3861854	200973843	48276778	108	92102											
IPO9	55705	broad.mit.edu	37	chr1	201822269	201822269	+	Intron	DEL	T	-	-													acagacttcatgcttaaaagTtttattcatgcagagcagtg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201822269	-	-	201822269	6	5	91	0	1	1	0	1	0	0	0	0	7869	1740	60	0		0	IPO9	1	201822269	Intron	DEL	T	TCGA-17-Z062-01A-01W-0747-08	848426	201822269	47428352	109	92103											
SYT2	127833	broad.mit.edu	37	chr1	202568477	202568477	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtggatcttcacgtacgGgtctgcggagggagaatccc	15	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202568477	A	A	202568477	3	1	91	1	0	0	0	0	1	0	0	0	15593	1232	43	4	345	4	SYT2	1	202568477	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	746208	202568477	46682144	110	92104											
PPFIA4	8497	broad.mit.edu	37	chr1	203014952	203014952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggttaccgtccttcttGtcccctcttctcccaggctc	8	17	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203014952	T	T	203014952	1	4	91	0	1	0	0	0	0	0	0	0	12408	1392	48	3		3	PPFIA4	1	203014952	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	446475	203014952	46235669	111	92105											
CR1L	1379	broad.mit.edu	37	chr1	207825864	207825864	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtgatatcagtacttcatCttcatgttcctattctctta	4	9	5	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207825864	A	A	207825864	1	1	91	0	1	0	0	0	0	0	0	0	3873	928	32	3		3	CR1L	1	207825864	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4810912	207825864	41424757	112	92106											
CR1L	1379	broad.mit.edu	37	chr1	207870881	207870881	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagatgtcctgcatgctgAgcgtacccaaagggacaagg	12	11	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207870881	T	T	207870881	3	4	91	1	0	0	0	0	1	0	0	0	3873	304	11	5	918	5	CR1L	1	207870881	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	45017	207870881	41379740	113	92107											
CR1L	1379	broad.mit.edu	37	chr1	207871034	207871034	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatgtgaaggtgactagaCtcttatctggcttggtattt	11	6	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207871034	T	T	207871034	1	4	91	0	1	0	0	0	0	0	0	0	3873	580	20	4		4	CR1L	1	207871034	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	153	207871034	41379587	114	92108											
HSD11B1	3290	broad.mit.edu	37	chr1	209880509	209880509	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatatgtggaaggtagaagAaaaaaaaaaatgccagggat	11	3	0	2	rs72201436		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209880509	G	G	209880509	1	3	91	0	1	0	0	0	0	0	0	0	7442	261	9	5		5	HSD11B1	1	209880509	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2009475	209880509	39370112	115	92109											
RPS6KC1	26750	broad.mit.edu	37	chr1	213277748	213277748	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgtaaactatcataaaccAgtgtttgatcattcttccct	5	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213277748	T	T	213277748	1	4	91	0	1	0	0	0	0	0	0	0	13769	203	7	5		5	RPS6KC1	1	213277748	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3397239	213277748	35972873	116	92110											
KCNK2	3776	broad.mit.edu	37	chr1	215342473	215342473	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaattttttggagtttctGaatcaatcttgagttcatat	7	5	4	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215342473	T	T	215342473	1	4	91	0	1	0	0	0	0	0	0	0	8136	1305	45	3		3	KCNK2	1	215342473	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2064725	215342473	33908148	117	92111											
USH2A	7399	broad.mit.edu	37	chr1	216172398	216172398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttttcttggttgtttcCacctgggaatggtaaaatac	8	6	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216172398	A	A	216172398	3	1	91	1	0	0	0	0	1	0	0	0	17162	595	21	2	9276	2	USH2A	1	216172398	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	829925	216172398	33078223	118	92112											
USH2A	7399	broad.mit.edu	37	chr1	216256812	216256812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatacagcaagaaaatcagGtccatctttgttataaacga	6	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216256812	T	T	216256812	3	4	91	1	0	0	0	0	1	0	0	0	17162	1261	44	3	10512	3	USH2A	1	216256812	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	84414	216256812	32993809	119	92113											
USH2A	7399	broad.mit.edu	37	chr1	216260106	216260106	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttcgcgggagccctcccaGaaagactcctgtgttatctc	9	14	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216260106	A	A	216260106	2	1	91	1	0	0	0	0	0	0	0	1	17162	933	33	4		4	USH2A	1	216260106	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3294	216260106	32990515	120	92114											
USH2A	7399	broad.mit.edu	37	chr1	216371755	216371756	+	Missense_Mutation	DNP	CC	AA	AA													acttggtgtatggctccaagCcagtgatggttgtcattgtt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	216371756	AA	AA	216371755	3	1	91	1	0	0	0	0	1	0	0	0	17162	739	26	3	11859	3	USH2A	1	216371755	Missense_Mutation	DNP	CC	TCGA-17-Z062-01A-01W-0747-08	111649	216371755	32878866	121	92115											
ESRRG	2104	broad.mit.edu	37	chr1	216741469	216741469	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagacaggcaccggcttacTattaaggtagctatgtttga	10	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216741469	C	C	216741469	1	2	91	0	1	0	0	0	0	0	0	0	5304	1537	53	5		5	ESRRG	1	216741469	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	369714	216741469	32509152	122	92116											
TAF1A	9015	broad.mit.edu	37	chr1	222734835	222734835	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttttcctggagttccactCttcttgaacccacgcaaggt	8	12	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222734835	A	A	222734835	4	1	91	1	0	0	0	0	0	1	0	0	15638	922	32	3	249	3	TAF1A	1	222734835	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5993366	222734835	26515786	123	92117											
ZNF678	339500	broad.mit.edu	37	chr1	227813671	227813671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtggggcatatgggtgtGggtggtgaaagtggggtttc	21	2	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227813671	T	T	227813671	1	4	91	0	1	0	0	0	0	0	0	0	18212	1363	47	2		2	ZNF678	1	227813671	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5078836	227813671	21436950	124	92118											
WNT3A	89780	broad.mit.edu	37	chr1	228238526	228238526	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagcgaggacatcgagttTggtgggatggtgtctcggga	18	5	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228238526	A	A	228238526	3	1	91	1	0	0	0	0	1	0	0	0	17516	1809	63	5	493	5	WNT3A	1	228238526	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	424855	228238526	21012095	125	92119											
WNT3A	89780	broad.mit.edu	37	chr1	228247907	228247907	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcgtggcttctgcaggaatCccggctccagagcaggaaat	14	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228247907	A	A	228247907	1	1	91	0	1	0	0	0	0	0	0	0	17516	870	30	3		3	WNT3A	1	228247907	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	9381	228247907	21002714	126	92120											
CAPN9	10753	broad.mit.edu	37	chr1	230933796	230933796	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagtccttgtttaccaccaGatggagcagcttccccacag	8	13	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230933796	A	A	230933796	1	1	91	0	1	0	0	0	0	0	0	0	2658	957	33	4		4	CAPN9	1	230933796	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2685889	230933796	18316825	127	92121											
RYR2	6262	broad.mit.edu	37	chr1	237756789	237756789	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacagtactattactcagTgagaatctttcctggacaag	7	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237756789	C	C	237756789	3	2	91	1	0	0	0	0	1	0	0	0	13880	1696	59	5	4419	5	RYR2	1	237756789	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	6822993	237756789	11493832	128	92122											
KMO	8564	broad.mit.edu	37	chr1	241712923	241712923	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgcagtaattttgctcatCctgagctaggatataaagtg	10	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241712923	A	A	241712923	1	1	91	0	1	0	0	0	0	0	0	0	8495	870	30	3		3	KMO	1	241712923	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3956134	241712923	7537698	129	92123											
OR1C1	26188	broad.mit.edu	37	chr1	247920993	247920993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggtggcagctgcaggtgGaaacagctctctgcttgccc	13	12	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247920993	T	T	247920993	3	4	91	1	0	0	0	0	1	0	0	0	11046	1174	41	3	230	3	OR1C1	1	247920993	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	6208070	247920993	1329628	130	92124											
OR14C36	127066	broad.mit.edu	37	chr1	248512233	248512233	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacctgtgacagcagcCttcacatgcccatgtacttc	6	16	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248512233	T	T	248512233	3	4	91	1	0	0	0	0	1	0	0	0	11040	681	24	4	159	4	OR14C36	1	248512233	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	591240	248512233	738388	131	92125											
OR2T34	127068	broad.mit.edu	37	chr1	248737810	248737811	+	Frame_Shift_Del	DEL	CA	-	-													tggcccacaagcatcttgggCacagtcacgcataggtacat							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248737811	-	-	248737810	7	5	91	1	0	1	0	1	0	0	0	0	11119	697	25	0	711	0	OR2T34	1	248737810	Frame_Shift_Del	DEL	CA	TCGA-17-Z062-01A-01W-0747-08	225577	248737810	512811	132	92126											
RSAD2	91543	broad.mit.edu	37	chr2	7018220	7018220	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttccacacagccaaaacaTcctttgtgctgccccttgag	7	14	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7018220	G	G	7018220	3	3	91	1	0	0	0	0	1	0	0	0	13806	1435	50	5	291	5	RSAD2	2	7018220	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08		7018220	236181153	133	92127											
NOL10	79954	broad.mit.edu	37	chr2	10712193	10712193	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaggtaggaccacttccCaaatcaatgaaacgaccgtc	7	13	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10712193	A	A	10712193	1	1	91	0	1	0	0	0	0	0	0	0	10615	609	21	2		2	NOL10	2	10712193	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3693973	10712193	232487180	134	92128											
GREB1	9687	broad.mit.edu	37	chr2	11716594	11716594	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaagcagaaacacttgaaGtattacctggtccgtaatgc	9	8	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11716594	C	C	11716594	3	2	91	1	0	0	0	0	1	0	0	0	6826	1020	36	4	584	4	GREB1	2	11716594	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1004401	11716594	231482779	135	92129											
APOB	338	broad.mit.edu	37	chr2	21234204	21234204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatagcttgctgataaggCagcagaagagatggcataga	12	5	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21234204	A	A	21234204	3	1	91	1	0	0	0	0	1	0	0	0	787	710	25	3	8171	3	APOB	2	21234204	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	9517610	21234204	221965169	136	92130											
APOB	338	broad.mit.edu	37	chr2	21242677	21242677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaggtgcagtaattcaGgccaggaaagacttgcttgc	13	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21242677	T	T	21242677	3	4	91	1	0	0	0	0	1	0	0	0	787	991	35	2	10818	2	APOB	2	21242677	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	8473	21242677	221956696	137	92131											
DNMT3A	1788	broad.mit.edu	37	chr2	25469966	25469966	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtacatgggctgcttgttgTacgtggcctggtggaacgca	16	8	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25469966	C	C	25469966	3	2	91	1	0	0	0	0	1	0	0	0	4716	1638	57	5	1722	5	DNMT3A	2	25469966	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	4227289	25469966	217729407	138	92132											
XDH	7498	broad.mit.edu	37	chr2	31595228	31595228	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggggcaggggccggccCaccatgtcctcctcagactg	15	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31595228	A	A	31595228	2	1	91	1	0	0	0	0	0	0	0	1	17553	581	21	2		2	XDH	2	31595228	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6125262	31595228	211604145	139	92133											
MAP4K3	8491	broad.mit.edu	37	chr2	39515294	39515294	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtgtgggggtaatctgGgaggtggtggtctaggtgga	21	2	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39515294	A	A	39515294	3	1	91	1	0	0	0	0	1	0	0	0	9353	1232	43	4	1302	4	MAP4K3	2	39515294	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7920066	39515294	203684079	140	92134											
SLC8A1	6546	broad.mit.edu	37	chr2	40397381	40397381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaacattaaagaactctGggaggctgtggttttcaagg	11	7	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40397381	T	T	40397381	1	4	91	0	1	0	0	0	0	0	0	0	14820	1363	47	2		2	SLC8A1	2	40397381	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	882087	40397381	202801992	141	92135											
PSME4	23198	broad.mit.edu	37	chr2	54115823	54115823	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taagttaacacaaaacctttCgtgttaacctcataggtttt	5	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54115823	A	A	54115823	1	1	91	0	1	0	0	0	0	0	0	0	12815	899	31	3		3	PSME4	2	54115823	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	13718442	54115823	189083550	142	92136											
SPTBN1	6711	broad.mit.edu	37	chr2	54852008	54852008	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggaatgagctcataagacAggagaaactggaacagctcg	13	8	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54852008	C	C	54852008	3	2	91	1	0	0	0	0	1	0	0	0	15237	188	7	5	1401	5	SPTBN1	2	54852008	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	736185	54852008	188347365	143	92137											
APLF	200558	broad.mit.edu	37	chr2	68730154	68730154	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagatagagtaggtgtgtaAtgtgtgtgtacgcatgtgtg	17	2	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68730154	T	T	68730154	1	4	91	0	1	0	0	0	0	0	0	0	778	116	4	5		5	APLF	2	68730154	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	13878146	68730154	174469219	144	92138											
TIA1	7072	broad.mit.edu	37	chr2	70457967	70457967	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgaaactccacaaaacaaTagggatcatttccagctgtc	6	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70457967	C	C	70457967	3	2	91	1	0	0	0	0	1	0	0	0	16010	1406	49	5	1061	5	TIA1	2	70457967	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1727813	70457967	172741406	145	92139											
DYSF	8291	broad.mit.edu	37	chr2	71747970	71747970	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcagaccctgatgacttctCtgctggggccagaggctacc	11	14	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71747970	T	T	71747970	3	4	91	1	0	0	0	0	1	0	0	0	4899	913	32	4	1223	4	DYSF	2	71747970	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1290003	71747970	171451403	146	92140											
C2orf65	130951	broad.mit.edu	37	chr2	74867251	74867251	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccatcaagctgcaggctAgagagaagaagttctgcaga	13	9	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74867251	G	G	74867251	3	3	91	1	0	0	0	0	1	0	0	0	2206	420	15	5	1480	5	C2orf65	2	74867251	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3119281	74867251	168332122	147	92141											
CTNNA2	1496	broad.mit.edu	37	chr2	80646826	80646826	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatattctattgtatttttGgagaaataaagtcctggaat	8	3	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80646826	C	C	80646826	1	2	91	0	1	0	0	0	0	0	0	0	4047	1363	47	4		4	CTNNA2	2	80646826	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5779575	80646826	162552547	148	92142											
IMMT	10989	broad.mit.edu	37	chr2	86371860	86371860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgaattcattatcagaaCagttggctttgatggcctca	11	7	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86371860	T	T	86371860	3	4	91	1	0	0	0	0	1	0	0	0	7788	478	17	4	472	4	IMMT	2	86371860	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5725034	86371860	156827513	149	92143											
ACTR1B	10120	broad.mit.edu	37	chr2	98274560	98274560	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaacagcagctcgggggcCcggaatcgtgcaggccccac	15	14	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98274560	A	A	98274560	2	1	91	1	0	0	0	0	0	0	0	1	210	610	22	2		2	ACTR1B	2	98274560	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	11902700	98274560	144924813	150	92144											
NMS	129521	broad.mit.edu	37	chr2	101098849	101098849	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgactggagagagtgAgaggcagccatggggaggac	19	6	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101098849	T	T	101098849	1	4	91	0	1	0	0	0	0	0	0	0	10597	319	11	5		5	NMS	2	101098849	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2824289	101098849	142100524	151	92145											
NPAS2	4862	broad.mit.edu	37	chr2	101582093	101582093	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcagggtgtctcctccctGatgacaagtcctccttgtcc	9	15	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101582093	A	A	101582093	1	1	91	0	1	0	0	0	0	0	0	0	10658	1305	45	4		4	NPAS2	2	101582093	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	483244	101582093	141617280	152	92146											
IL1RL2	8808	broad.mit.edu	37	chr2	102842540	102842540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaatgcctcaaaattgGtatcctcttatacatataca	4	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102842540	T	T	102842540	1	4	91	0	1	0	0	0	0	0	0	0	7734	1276	44	3		3	IL1RL2	2	102842540	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1260447	102842540	140356833	153	92147											
IL18RAP	8807	broad.mit.edu	37	chr2	103061680	103061680	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttaaaggatgaaatcattGagcgtaatatcatcttggaa	8	5	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103061680	C	C	103061680	3	2	91	1	0	0	0	0	1	0	0	0	7718	1291	45	4	978	4	IL18RAP	2	103061680	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	219140	103061680	140137693	154	92148											
RGPD4	285190	broad.mit.edu	37	chr2	108477253	108477253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taattctttttatgatcaacGagaatacatagggagaagtg	9	4	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108477253	T	T	108477253	3	4	91	1	0	0	0	0	1	0	0	0	13396	1058	37	3	1840	3	RGPD4	2	108477253	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5415573	108477253	134722120	155	92149											
IL1F8	27177	broad.mit.edu	37	chr2	113785566	113785566	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtcctgatgtggtggAggtggctatgaaccagccag	17	8	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113785566	T	T	113785566	1	4	91	0	1	0	0	0	0	0	0	0	7726	304	11	5		5	IL1F8	2	113785566	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	5308313	113785566	129413807	156	92150											
MARCO	8685	broad.mit.edu	37	chr2	119750654	119750654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccgcacttacccaaagcCccaaggggccttccttgcct	8	18	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119750654	A	A	119750654	1	1	91	0	1	0	0	0	0	0	0	0	9403	638	22	2		2	MARCO	2	119750654	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5965088	119750654	123448719	157	92151											
GLI2	2736	broad.mit.edu	37	chr2	121748105	121748105	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcctccacagcctctccCagaactcctcccgcctcacc	4	24	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121748105	T	T	121748105	4	4	91	1	0	0	0	0	0	1	0	0	6502	595	21	4	4665	4	GLI2	2	121748105	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1997451	121748105	121451268	158	92152											
CCDC74A	90557	broad.mit.edu	37	chr2	132290296	132290296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaaagcccaccacacttaGgcagtgcgaagtgctcatcc	10	14	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132290296	T	T	132290296	3	4	91	1	0	0	0	0	1	0	0	0	2875	1000	35	2	836	2	CCDC74A	2	132290296	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	10542191	132290296	110909077	159	92153											
LRP1B	53353	broad.mit.edu	37	chr2	141083400	141083400	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgccaatgatggagagctCaaagtcagcccaatatatgc	9	10	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141083400	A	A	141083400	4	1	91	1	0	0	0	0	0	1	0	0	9042	835	29	3	1576	3	LRP1B	2	141083400	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8793104	141083400	102115973	160	92154											
PLA2R1	22925	broad.mit.edu	37	chr2	160807954	160807954	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctgaccagttgtgctTtgtgcatcaggcaggttttt	12	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160807954	C	C	160807954	3	2	91	1	0	0	0	0	1	0	0	0	12105	1841	64	5	990	5	PLA2R1	2	160807954	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	19724554	160807954	82391419	161	92155											
KCNH7	90134	broad.mit.edu	37	chr2	163253407	163253407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttacatctgcattagactttCcaggtttggcataaagatga	8	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163253407	A	A	163253407	3	1	91	1	0	0	0	0	1	0	0	0	8107	855	30	3	1158	3	KCNH7	2	163253407	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2445453	163253407	79945966	162	92156											
RAPGEF4	11069	broad.mit.edu	37	chr2	173913389	173913389	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagccaacccttcagtaagtTaagtgctgccacctcttaca	7	13	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173913389	A	A	173913389	1	1	91	0	1	0	0	0	0	0	0	0	13154	1769	61	5		5	RAPGEF4	2	173913389	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	10659982	173913389	69285984	163	92157											
CDCA7	83879	broad.mit.edu	37	chr2	174224139	174224139	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaggccagatgtcactaacGaactggccggtatttttcat	9	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174224139	T	T	174224139	1	4	91	0	1	0	0	0	0	0	0	0	3120	1059	37	3		3	CDCA7	2	174224139	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	310750	174224139	68975234	164	92158											
HOXD10	3236	broad.mit.edu	37	chr2	176981615	176981615	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttttttagtagattccttGatcagtgcctgcaggagtga	10	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176981615	T	T	176981615	3	4	91	1	0	0	0	0	1	0	0	0	7386	1281	45	3	56	3	HOXD10	2	176981615	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2757476	176981615	66217758	165	92159											
SESTD1	91404	broad.mit.edu	37	chr2	180014052	180014052	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttgctgatttcctttatCacttccattgttaatcaaag	4	10	3	1	rs145174802	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180014052	G	G	180014052	3	3	91	1	0	0	0	0	1	0	0	0	14240	826	29	4	1585	4	SESTD1	2	180014052	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3032437	180014052	63185321	166	92160											
ITGA4	3676	broad.mit.edu	37	chr2	182390005	182390005	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaaatatgaggttaagCtgactgttcatgggtaagta	10	4	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182390005	G	G	182390005	3	3	91	1	0	0	0	0	1	0	0	0	7948	796	28	4	2408	4	ITGA4	2	182390005	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2375953	182390005	60809368	167	92161											
DNAJC10	54431	broad.mit.edu	37	chr2	183608212	183608212	+	Intron	SNP	T	G	G													attttcgtagcctattagctTctgtttaaaaactgtgtcat							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183608212	G	G	183608212	1	3	91	0	1	0	0	0	0	0	0	0	4669	1798	62	5		5	DNAJC10	2	183608212	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1218207	183608212	59591161	168	92162	412	2									
DNAJC10	54431	broad.mit.edu	37	chr2	183608218	183608218	+	Intron	SNP	T	G	G													gtagcctattagcttctgttTaaaaactgtgtcattagggc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183608218	G	G	183608218	1	3	91	0	1	0	0	0	0	0	0	0	4669	1769	61	5		5	DNAJC10	2	183608218	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	6	183608218	59591155	169	92163	412	2									
ZNF804A	91752	broad.mit.edu	37	chr2	185801561	185801561	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagataaaaataagccagacTtaaaagatctttgttctcag	6	6	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801561	A	A	185801561	3	1	91	1	0	0	0	0	1	0	0	0	18299	1606	56	5	1452	5	ZNF804A	2	185801561	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2193343	185801561	57397812	170	92164											
ITGAV	3685	broad.mit.edu	37	chr2	187533538	187533538	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaggcaatgctccatcttcAgtggccttacaaatataata	6	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187533538	T	T	187533538	3	4	91	1	0	0	0	0	1	0	0	0	7958	188	7	5	2632	5	ITGAV	2	187533538	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1731977	187533538	55665835	171	92165											
SATB2	23314	broad.mit.edu	37	chr2	200193403	200193403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaaagagtgaaaaatacGgaaagcaagtttctcacctg	9	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200193403	T	T	200193403	1	4	91	0	1	0	0	0	0	0	0	0	13966	1131	39	1		1	SATB2	2	200193403	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	12659865	200193403	43005970	172	92166											
CDK15	65061	broad.mit.edu	37	chr2	202677286	202677286	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacagctatccgagaagGtaagaacagcagaaatggac	10	7	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202677286	T	T	202677286	5	4	91	1	0	0	0	0	0	0	1	0	3161	1275	44	3	306	3	CDK15	2	202677286	Splice_Site	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2483883	202677286	40522087	173	92167											
CYP20A1	57404	broad.mit.edu	37	chr2	204154501	204154501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacagatattgtcagcatGtgctttgtgaaactgttcga	9	6	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204154501	T	T	204154501	3	4	91	1	0	0	0	0	1	0	0	0	4185	1377	48	3	1023	3	CYP20A1	2	204154501	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1477215	204154501	39044872	174	92168											
ADAM23	8745	broad.mit.edu	37	chr2	207407906	207407906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaagacacaataatgaaGctcacttgctatttcttgcc	6	9	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207407906	T	T	207407906	1	4	91	0	1	0	0	0	0	0	0	0	245	986	34	3		3	ADAM23	2	207407906	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3253405	207407906	35791467	175	92169											
PTH2R	5746	broad.mit.edu	37	chr2	209358218	209358218	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcactttacctggctatgTctggagtaactcagagcagg	10	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209358218	A	A	209358218	3	1	91	1	0	0	0	0	1	0	0	0	12866	1667	58	5	1537	5	PTH2R	2	209358218	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1950312	209358218	33841155	176	92170											
ABCA12	26154	broad.mit.edu	37	chr2	215818780	215818780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtagccaaaacagaattGtgggaaaatcaggaaaatgc	10	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215818780	T	T	215818780	3	4	91	1	0	0	0	0	1	0	0	0	30	1386	48	3	1382	3	ABCA12	2	215818780	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	6460562	215818780	27380593	177	92171											
TNS1	7145	broad.mit.edu	37	chr2	218683451	218683451	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggggaccctggtcactgcTctctcccgacgggaaactcc	11	17	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	218683451	C	C	218683451	3	2	91	1	0	0	0	0	1	0	0	0	16466	1551	54	5	1955	5	TNS1	2	218683451	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2864671	218683451	24515922	178	92172											
CXCR2	3579	broad.mit.edu	37	chr2	218999752	218999752	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgctggtcatcttatacagCagggtcggccgctccgtcac	11	13	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	218999752	G	G	218999752	3	3	91	1	0	0	0	0	1	0	0	0	4124	709	25	4	230	4	CXCR2	2	218999752	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	316301	218999752	24199621	179	92173											
FAM134A	79137	broad.mit.edu	37	chr2	220045483	220045483	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctacattgtctgtgagtAgggtctgtccctgccctatt	9	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220045483	C	C	220045483	1	2	91	0	1	0	0	0	0	0	0	0	5491	435	15	5		5	FAM134A	2	220045483	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1045731	220045483	23153890	180	92174											
MFF	56947	broad.mit.edu	37	chr2	228212018	228212018	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagctaatctttcctctGctcgtggcattttgtcgctt	9	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228212018	T	T	228212018	3	4	91	1	0	0	0	0	1	0	0	0	9612	1319	46	3	692	3	MFF	2	228212018	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	8166535	228212018	14987355	181	92175											
SP140	11262	broad.mit.edu	37	chr2	231112873	231112873	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggcaaggtttctgacagtCtctatcagattactggattg	11	7	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231112873	T	T	231112873	1	4	91	0	1	0	0	0	0	0	0	0	15076	928	32	4		4	SP140	2	231112873	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2900855	231112873	12086500	182	92176											
C2orf57	165100	broad.mit.edu	37	chr2	232457843	232457843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagacggccacccccaggGccatatcaacatctggagac	9	15	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232457843	T	T	232457843	3	4	91	1	0	0	0	0	1	0	0	0	2200	1203	42	3	183	3	C2orf57	2	232457843	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1344970	232457843	10741530	183	92177											
ANKMY1	51281	broad.mit.edu	37	chr2	241448843	241448843	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaggatttgctccgtgggaTagaaggagccggactatgtc	14	7	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241448843	C	C	241448843	2	2	91	1	0	0	0	0	0	0	0	1	634	1393	49	5		5	ANKMY1	2	241448843	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	8991000	241448843	1750530	184	92178											
CRBN	51185	broad.mit.edu	37	chr3	3214613	3214613	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctttcctgtacattgcttCcaagaaaattttaaaaggaa	5	9	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3214613	A	A	3214613	1	1	91	0	1	0	0	0	0	0	0	0	3883	870	30	3		3	CRBN	3	3214613	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08		3214613	194807817	185	92179											
BRPF1	7862	broad.mit.edu	37	chr3	9783176	9783176	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaaacaaaaaattagCcaggcatggtggcaggcgcc	11	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9783176	G	G	9783176	1	3	91	0	1	0	0	0	0	0	0	0	1529	754	26	4		4	BRPF1	3	9783176	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6568563	9783176	188239254	186	92180											
ATP2B2	491	broad.mit.edu	37	chr3	10392086	10392086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttgggacacgcacctccCccttctcgttgcggatcctc	9	17	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10392086	A	A	10392086	3	1	91	1	0	0	0	0	1	0	0	0	1144	623	22	2	1455	2	ATP2B2	3	10392086	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	608910	10392086	187630344	187	92181											
ATG7	10533	broad.mit.edu	37	chr3	11348421	11348421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcttgtatctaggagtGctcccaccccagcccgttgc	8	15	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11348421	T	T	11348421	3	4	91	1	0	0	0	0	1	0	0	0	1105	1319	46	3	230	3	ATG7	3	11348421	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	956335	11348421	186674009	188	92182											
C3orf31	132001	broad.mit.edu	37	chr3	11887818	11887818	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accgtcgcttcaactcgcgcTgtcgttatactaggaaggca	10	12	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11887818	A	A	11887818	1	1	91	0	1	0	0	0	0	0	0	0	2243	1595	55	5		5	C3orf31	3	11887818	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	539397	11887818	186134612	189	92183											
WNT7A	7476	broad.mit.edu	37	chr3	13916571	13916571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctatgacgatgatggcGtcgggccggctctggcagat	14	11	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13916571	T	T	13916571	3	4	91	1	0	0	0	0	1	0	0	0	17521	1136	40	3	890	3	WNT7A	3	13916571	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2028753	13916571	184105859	190	92184											
DAZL	1618	broad.mit.edu	37	chr3	16638346	16638346	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagacattctgaaactgtgGtggaggaggatgattaaaaa	12	5	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16638346	A	A	16638346	3	1	91	1	0	0	0	0	1	0	0	0	4279	1261	44	4	502	4	DAZL	3	16638346	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2721775	16638346	181384084	191	92185											
SATB1	6304	broad.mit.edu	37	chr3	18390976	18390976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtcttgtatgaaactctGgaggattcccaaggcttcca	9	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18390976	T	T	18390976	3	4	91	1	0	0	0	0	1	0	0	0	13965	1357	47	2	317	2	SATB1	3	18390976	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1752630	18390976	179631454	192	92186											
SATB1	6304	broad.mit.edu	37	chr3	18462169	18462169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatacaaaacatgttctgCcactccacccccacacagtg	5	15	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18462169	A	A	18462169	1	1	91	0	1	0	0	0	0	0	0	0	13965	754	26	3		3	SATB1	3	18462169	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	71193	18462169	179560261	193	92187											
KCNH8	131096	broad.mit.edu	37	chr3	19384093	19384093	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccagacaaagtcaaaggaAgatcaagagcagggacccac	10	12	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19384093	T	T	19384093	4	4	91	1	0	0	0	0	0	1	0	0	8108	64	3	5	471	5	KCNH8	3	19384093	Nonsense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	921924	19384093	178638337	194	92188											
DCLK3	85443	broad.mit.edu	37	chr3	36779986	36779986	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgggggtctcggtctcCccacagcggtggtctccttt	12	14	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36779986	T	T	36779986	2	4	91	1	0	0	0	0	0	0	0	1	4326	610	22	4		4	DCLK3	3	36779986	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	17395893	36779986	161242444	195	92189											
ITGA9	3680	broad.mit.edu	37	chr3	37567630	37567630	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatggagccattcaccattCatgggctctttcctctgtcc	9	13	4	0	rs79861835	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37567630	A	A	37567630	1	1	91	0	1	0	0	0	0	0	0	0	7953	841	29	3		3	ITGA9	3	37567630	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	787644	37567630	160454800	196	92190											
DLEC1	9940	broad.mit.edu	37	chr3	38158563	38158563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggagtgtactggctacgCcctgggtttcatgagcttgg	16	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38158563	A	A	38158563	3	1	91	1	0	0	0	0	1	0	0	0	4592	739	26	3	4395	3	DLEC1	3	38158563	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	590933	38158563	159863867	197	92191											
ULK4	54986	broad.mit.edu	37	chr3	41746639	41746639	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaattcttctgatgctgtCagtcctagaaatacagttaa	6	7	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41746639	A	A	41746639	2	1	91	1	0	0	0	0	0	0	0	1	17104	813	29	3		3	ULK4	3	41746639	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3588076	41746639	156275791	198	92192											
ZDHHC3	51304	broad.mit.edu	37	chr3	44974515	44974515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaataaaatgaggttggccCctggcaccatgaaggaaaca	10	8	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44974515	A	A	44974515	1	1	91	0	1	0	0	0	0	0	0	0	17742	638	22	2		2	ZDHHC3	3	44974515	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3227876	44974515	153047915	199	92193											
CCR3	1232	broad.mit.edu	37	chr3	46307221	46307221	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctctttacccagaggataCagtatatagctggaggcatt	10	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46307221	G	G	46307221	3	3	91	1	0	0	0	0	1	0	0	0	2972	478	17	4	641	4	CCR3	3	46307221	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1332706	46307221	151715209	200	92194											
COL7A1	1294	broad.mit.edu	37	chr3	48619959	48619959	+	Intron	DEL	A	-	-													ggtggcccctgaatgtagagAaagtgtgagcccaggagggg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48619959	-	-	48619959	6	5	91	0	1	1	0	1	0	0	0	0	3736	261	9	0		0	COL7A1	3	48619959	Intron	DEL	A	TCGA-17-Z062-01A-01W-0747-08	2312738	48619959	149402471	201	92195											
COL7A1	1294	broad.mit.edu	37	chr3	48620455	48620455	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgggtttacccgggatccCgctgggcctgggggtccacg	17	12	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48620455	A	A	48620455	2	1	91	1	0	0	0	0	0	0	0	1	3736	639	23	1		1	COL7A1	3	48620455	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	496	48620455	149401975	202	92196											
TMEM89	440955	broad.mit.edu	37	chr3	48658432	48658432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggcccgccgtttccagggtCcgcagggctcagtggtcacc	15	15	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48658432	A	A	48658432	3	1	91	1	0	0	0	0	1	0	0	0	16336	855	30	3	159	3	TMEM89	3	48658432	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	37977	48658432	149363998	203	92197											
CCDC36	339834	broad.mit.edu	37	chr3	49282171	49282171	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtggccaagacatgtgaGtgcctcatgtttgaggtatc	12	8	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49282171	T	T	49282171	1	4	91	0	1	0	0	0	0	0	0	0	2835	1044	36	3		3	CCDC36	3	49282171	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	623739	49282171	148740259	204	92198											
MST1R	4486	broad.mit.edu	37	chr3	49935063	49935063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccccactgcctgggtgcCcaagggctccagttcacact	11	16	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49935063	A	A	49935063	3	1	91	1	0	0	0	0	1	0	0	0	9985	623	22	2	2326	2	MST1R	3	49935063	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	652892	49935063	148087367	205	92199											
RBM6	10180	broad.mit.edu	37	chr3	50096086	50096086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgggcctggtggcttacGcctgtaatcccagcactttg	13	13	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50096086	T	T	50096086	1	4	91	0	1	0	0	0	0	0	0	0	13252	1102	38	3		3	RBM6	3	50096086	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	161023	50096086	147926344	206	92200											
DNAH1	25981	broad.mit.edu	37	chr3	52360842	52360842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgcccaggcacctggacCaccagcacccccaaaccatc	6	20	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52360842	A	A	52360842	3	1	91	1	0	0	0	0	1	0	0	0	4637	594	21	2	687	2	DNAH1	3	52360842	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2264756	52360842	145661588	207	92201											
ACOX2	8309	broad.mit.edu	37	chr3	58516897	58516897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcccaaactaagctctatGgaggacccaggcccagcctg	11	14	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58516897	T	T	58516897	1	4	91	0	1	0	0	0	0	0	0	0	159	1363	47	2		2	ACOX2	3	58516897	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	6156055	58516897	139505533	208	92202											
FAM19A4	151647	broad.mit.edu	37	chr3	68788366	68788366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctggaaaacaaaggcCaaataatatttgtgacactg	10	6	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68788366	A	A	68788366	1	1	91	0	1	0	0	0	0	0	0	0	5581	609	21	2		2	FAM19A4	3	68788366	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	10271469	68788366	129234064	209	92203											
ROBO2	6092	broad.mit.edu	37	chr3	77542310	77542310	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtaccaaaagtaaattaGgtttcctttgcttttttcat	6	6	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77542310	T	T	77542310	1	4	91	0	1	0	0	0	0	0	0	0	13625	1015	35	2		2	ROBO2	3	77542310	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	8753944	77542310	120480120	210	92204											
EPHA3	2042	broad.mit.edu	37	chr3	89390951	89390951	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctctaatataaacgagacCtcagttatcctggactggag	8	9	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89390951	T	T	89390951	2	4	91	1	0	0	0	0	0	0	0	1	5210	668	24	4		4	EPHA3	3	89390951	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	11848641	89390951	108631479	211	92205											
EPHA3	2042	broad.mit.edu	37	chr3	89448399	89448399	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatcaggtttgagtggttCactgtttatcattttatagc	9	5	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89448399	A	A	89448399	1	1	91	0	1	0	0	0	0	0	0	0	5210	841	29	3		3	EPHA3	3	89448399	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	57448	89448399	108574031	212	92206											
PROS1	5627	broad.mit.edu	37	chr3	93605211	93605211	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcactttccactttccgaGggaatcctgcaaagtatact	7	11	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93605211	A	A	93605211	3	1	91	1	0	0	0	0	1	0	0	0	12664	1000	35	4	758	4	PROS1	3	93605211	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4156812	93605211	104417219	213	92207											
DHFRL1	200895	broad.mit.edu	37	chr3	93781815	93781815	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgacaagaattctatagcgcGagcaaatcagtatctcgcga	9	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93781815	C	C	93781815	1	2	91	0	1	0	0	0	0	0	0	0	4522	1073	37	4		4	DHFRL1	3	93781815	5'Flank	SNP	G	TCGA-17-Z062-01A-01W-0747-08	176604	93781815	104240615	214	92208											
IMPG2	50939	broad.mit.edu	37	chr3	100949991	100949991	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctcacccacccggcaccTgcaaccaacagtcaccaagt	6	18	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100949991	A	A	100949991	5	1	91	1	0	0	0	0	0	0	1	0	7799	1594	55	5	509	5	IMPG2	3	100949991	Splice_Site	SNP	T	TCGA-17-Z062-01A-01W-0747-08	7168176	100949991	97072439	215	92209											
CBLB	868	broad.mit.edu	37	chr3	105400431	105400431	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtggtaatggcacgggatCagaggctgaatcaaaaacat	13	6	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105400431	A	A	105400431	3	1	91	1	0	0	0	0	1	0	0	0	2727	826	29	3	644	3	CBLB	3	105400431	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4450440	105400431	92621999	216	92210											
MYH15	22989	broad.mit.edu	37	chr3	108147287	108147287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccctcccatttcttccCctccctacttccatgttcag	2	21	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108147287	A	A	108147287	1	1	91	0	1	0	0	0	0	0	0	0	10128	638	22	2		2	MYH15	3	108147287	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2746856	108147287	89875143	217	92211											
MYH15	22989	broad.mit.edu	37	chr3	108220459	108220459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaaggactatccctgtgCgagcatgcttaaactcaatg	9	11	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108220459	A	A	108220459	1	1	91	0	1	0	0	0	0	0	0	0	10128	783	27	3		3	MYH15	3	108220459	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	73172	108220459	89801971	218	92212											
DZIP3	9666	broad.mit.edu	37	chr3	108327004	108327004	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaatcatctggtcaacTggtaagagaaagtttaattt	8	4	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108327004	A	A	108327004	3	1	91	1	0	0	0	0	1	0	0	0	4905	1594	55	5	107	5	DZIP3	3	108327004	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	106545	108327004	89695426	219	92213											
TRAT1	50852	broad.mit.edu	37	chr3	108572364	108572364	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaaacaaggtaggtgaGgcctagaaaacaagttactt	11	6	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108572364	A	A	108572364	1	1	91	0	1	0	0	0	0	0	0	0	16590	1015	35	4		4	TRAT1	3	108572364	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	245360	108572364	89450066	220	92214											
PHLDB2	90102	broad.mit.edu	37	chr3	111688727	111688727	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgttggtttgtttttgatcGgaacaagcgaacattctctt	9	7	1	1	rs140319291		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111688727	A	A	111688727	3	1	91	1	0	0	0	0	1	0	0	0	11947	1116	39	4	3649	4	PHLDB2	3	111688727	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3116363	111688727	86333703	221	92215											
CD200R1L	344807	broad.mit.edu	37	chr3	112564576	112564576	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttggagctgacatcttcCctaaagtatgcttttggagt	9	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112564576	T	T	112564576	1	4	91	0	1	0	0	0	0	0	0	0	3012	638	22	4		4	CD200R1L	3	112564576	5'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	875849	112564576	85457854	222	92216											
BOC	91653	broad.mit.edu	37	chr3	112999539	112999539	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagttctgtgtttatagcttCtgcgtgatatagtttcctcc	8	9	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112999539	T	T	112999539	1	4	91	0	1	0	0	0	0	0	0	0	1487	928	32	4		4	BOC	3	112999539	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	434963	112999539	85022891	223	92217											
BOC	91653	broad.mit.edu	37	chr3	113004182	113004182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgacaggcccaccctgcCcagccccacctccccatctg	9	22	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113004182	A	A	113004182	1	1	91	0	1	0	0	0	0	0	0	0	1487	638	22	2		2	BOC	3	113004182	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4643	113004182	85018248	224	92218											
WDR52	55779	broad.mit.edu	37	chr3	113120584	113120584	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctattgtctcaaaatcccaTatcttgtaaaatgaaaagaa	4	7	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113120584	A	A	113120584	2	1	91	1	0	0	0	0	0	0	0	1	17431	1396	49	5		5	WDR52	3	113120584	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	116402	113120584	84901846	225	92219											
ZNF80	7634	broad.mit.edu	37	chr3	113955551	113955551	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctccagtgtgaatctggCggtagcacaggaggtgcgac	14	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113955551	G	G	113955551	3	3	91	1	0	0	0	0	1	0	0	0	18297	768	27	4	454	4	ZNF80	3	113955551	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	834967	113955551	84066879	226	92220											
PLA1A	51365	broad.mit.edu	37	chr3	119336857	119336857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccttggttgtgttttttcTctgttcaggttatagttatc	8	6	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119336857	C	C	119336857	1	2	91	0	1	0	0	0	0	0	0	0	12083	1566	54	5		5	PLA1A	3	119336857	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	5381306	119336857	78685573	227	92221											
GSK3B	2932	broad.mit.edu	37	chr3	119595216	119595216	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacaatgagaaacctgtttTagttaactactgattaatat	6	5	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119595216	C	C	119595216	1	2	91	0	1	0	0	0	0	0	0	0	6890	1769	61	5		5	GSK3B	3	119595216	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	258359	119595216	78427214	228	92222											
RABL3	285282	broad.mit.edu	37	chr3	120461196	120461196	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtagtcttcaggccctgggaGggacttcagccacgggccga	15	12	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120461196	C	C	120461196	1	2	91	0	1	0	0	0	0	0	0	0	13080	1015	35	4		4	RABL3	3	120461196	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	865980	120461196	77561234	229	92223											
DIRC2	84925	broad.mit.edu	37	chr3	122545973	122545973	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatctcaatcatcttcactCtactttttgtataacagata	2	9	5	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122545973	T	T	122545973	1	4	91	0	1	0	0	0	0	0	0	0	4574	928	32	4		4	DIRC2	3	122545973	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2084777	122545973	75476457	230	92224											
CCDC48	79825	broad.mit.edu	37	chr3	128755683	128755683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttacatcagtccaaccCgctgtgtggctttaggccac	8	14	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128755683	A	A	128755683	1	1	91	0	1	0	0	0	0	0	0	0	2847	667	23	1		1	CCDC48	3	128755683	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6209710	128755683	69266747	231	92225											
COL6A6	131873	broad.mit.edu	37	chr3	130293296	130293296	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagaaaaaactgacagtGcacaacttcgatgaactgaa	9	8	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130293296	T	T	130293296	2	4	91	1	0	0	0	0	0	0	0	1	3735	1306	46	3		3	COL6A6	3	130293296	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1537613	130293296	67729134	232	92226											
TF	7018	broad.mit.edu	37	chr3	133483666	133483666	+	Intron	DEL	C	-	-													ataaaaaaaaggcatggtttCccaatctataaatcagggtt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133483666	-	-	133483666	6	5	91	0	1	1	0	1	0	0	0	0	15908	870	30	0		0	TF	3	133483666	Intron	DEL	C	TCGA-17-Z062-01A-01W-0747-08	3190370	133483666	64538764	233	92227											
RAB6B	51560	broad.mit.edu	37	chr3	133560607	133560607	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcataaccagcaagaggggaCgctcatgtcaggtctaatgt	12	9	3	1	rs146521230	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133560607	T	T	133560607	1	4	91	0	1	0	0	0	0	0	0	0	13060	551	19	4		4	RAB6B	3	133560607	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	76941	133560607	64461823	234	92228											
CEP63	80254	broad.mit.edu	37	chr3	134251825	134251825	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctaatggcactattttctgGaaccaattttctactatctt	4	9	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134251825	T	T	134251825	1	4	91	0	1	0	0	0	0	0	0	0	3287	1189	41	3		3	CEP63	3	134251825	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	691218	134251825	63770605	235	92229											
DZIP1L	199221	broad.mit.edu	37	chr3	137813704	137813704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttctctccctgcccacCtggagctgccgctgcctctc	8	18	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137813704	A	A	137813704	3	1	91	1	0	0	0	0	1	0	0	0	4904	695	24	2	1656	2	DZIP1L	3	137813704	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3561879	137813704	60208726	236	92230											
CEP70	80321	broad.mit.edu	37	chr3	138289206	138289206	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcttttattttattctgtTggtggcaagccctacttagt	8	7	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138289206	C	C	138289206	3	2	91	1	0	0	0	0	1	0	0	0	3289	1812	63	5	1426	5	CEP70	3	138289206	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	475502	138289206	59733224	237	92231											
PCOLCE2	26577	broad.mit.edu	37	chr3	142537154	142537154	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcaatggcagaatacaGcttaaatggacacagttcac	9	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142537154	T	T	142537154	1	4	91	0	1	0	0	0	0	0	0	0	11689	986	34	3		3	PCOLCE2	3	142537154	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4247948	142537154	55485276	238	92232											
PLOD2	5352	broad.mit.edu	37	chr3	145828089	145828089	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctcctgaattcagatagCgtttcccaatgtgcacaaca	6	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145828089	G	G	145828089	3	3	91	1	0	0	0	0	1	0	0	0	12197	768	27	4	1859	4	PLOD2	3	145828089	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3290935	145828089	52194341	239	92233											
CPB1	1360	broad.mit.edu	37	chr3	148563381	148563381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatctacccttactcatatGcttacaaactcggtgagaac	6	11	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148563381	T	T	148563381	3	4	91	1	0	0	0	0	1	0	0	0	3828	1319	46	3	983	3	CPB1	3	148563381	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2735292	148563381	49459049	240	92234											
FAM194A	131831	broad.mit.edu	37	chr3	150403468	150403468	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcactgtctattgtgcaaatCattatgttttcttatgtcat	5	7	5	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150403468	G	G	150403468	1	3	91	0	1	0	0	0	0	0	0	0	5573	841	29	4		4	FAM194A	3	150403468	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1840087	150403468	47618962	241	92235											
CLRN1	7401	broad.mit.edu	37	chr3	150659364	150659364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagaggtagaattttgtaCttacctgaaatgaagctcaa	8	6	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150659364	A	A	150659364	1	1	91	0	1	0	0	0	0	0	0	0	3589	580	20	3		3	CLRN1	3	150659364	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	255896	150659364	47363066	242	92236											
MED12L	116931	broad.mit.edu	37	chr3	151094924	151094924	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacagtattggaagtgctgAtacaagtagcacgagacaga	11	6	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151094924	G	G	151094924	3	3	91	1	0	0	0	0	1	0	0	0	9522	333	12	5	4279	5	MED12L	3	151094924	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	435560	151094924	46927506	243	92237											
MED12L	116931	broad.mit.edu	37	chr3	151097855	151097855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttgccagaggaagtaatGcattatttctaactagatct	8	6	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151097855	T	T	151097855	1	4	91	0	1	0	0	0	0	0	0	0	9522	1334	46	3		3	MED12L	3	151097855	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2931	151097855	46924575	244	92238											
MBNL1	4154	broad.mit.edu	37	chr3	152132887	152132887	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccatgatgcctggtgcccCattacaacccgtggtaagca	10	13	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152132887	T	T	152132887	3	4	91	1	0	0	0	0	1	0	0	0	9446	594	21	4	338	4	MBNL1	3	152132887	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1035032	152132887	45889543	245	92239											
MBNL1	4154	broad.mit.edu	37	chr3	152173406	152173406	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgattatcttaaacctatGgtgtacctcacagcccctca	5	13	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152173406	C	C	152173406	1	2	91	0	1	0	0	0	0	0	0	0	9446	1363	47	4		4	MBNL1	3	152173406	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	40519	152173406	45849024	246	92240											
RAP2B	5912	broad.mit.edu	37	chr3	152880634	152880634	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaggtggactcgtcgccgtCggtgctggagatcctggata	16	9	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152880634	T	T	152880634	3	4	91	1	0	0	0	0	1	0	0	0	13149	893	31	4	154	4	RAP2B	3	152880634	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	707228	152880634	45141796	247	92241											
DHX36	170506	broad.mit.edu	37	chr3	153998548	153998548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttacactgtgtttcctgctGtacctgaatttatattagat	6	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153998548	A	A	153998548	1	1	91	0	1	0	0	0	0	0	0	0	4549	1392	48	4		4	DHX36	3	153998548	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1117914	153998548	44023882	248	92242											
MME	4311	broad.mit.edu	37	chr3	154834521	154834521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatatatgggtggccagtaGcaacagaaaactgggagcaa	12	7	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154834521	T	T	154834521	3	4	91	1	0	0	0	0	1	0	0	0	9738	971	34	3	526	3	MME	3	154834521	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	835973	154834521	43187909	249	92243											
PLCH1	23007	broad.mit.edu	37	chr3	155211953	155211953	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacatttgctggggtttgAggacatagccacaattgcca	11	9	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155211953	G	G	155211953	3	3	91	1	0	0	0	0	1	0	0	0	12132	304	11	5	3005	5	PLCH1	3	155211953	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	377432	155211953	42810477	250	92244											
OTOL1	131149	broad.mit.edu	37	chr3	161217016	161217016	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaccaggagttgttgggcCccaaggccctagaggctaca	13	13	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161217016	T	T	161217016	3	4	91	1	0	0	0	0	1	0	0	0	11398	623	22	4	428	4	OTOL1	3	161217016	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6005063	161217016	36805414	251	92245											
OTOL1	131149	broad.mit.edu	37	chr3	161221575	161221575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtcaggaaatagaccagGcctctctcctcgtcatcttg	9	12	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161221575	T	T	161221575	3	4	91	1	0	0	0	0	1	0	0	0	11398	1203	42	3	1293	3	OTOL1	3	161221575	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4559	161221575	36800855	252	92246											
ZBBX	79740	broad.mit.edu	37	chr3	167051819	167051819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcgcctcatatgttaacCtaaataatttatatacatta	3	7	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167051819	A	A	167051819	1	1	91	0	1	0	0	0	0	0	0	0	17643	696	24	2		2	ZBBX	3	167051819	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5830244	167051819	30970611	253	92247											
WDR49	151790	broad.mit.edu	37	chr3	167272528	167272528	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaggatttgtgaaatatccAcagctccatcttgcccaaca	7	11	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167272528	T	T	167272528	3	4	91	1	0	0	0	0	1	0	0	0	17429	159	6	5	1423	5	WDR49	3	167272528	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	220709	167272528	30749902	254	92248											
SAMD7	344658	broad.mit.edu	37	chr3	169644499	169644499	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgctccctgccggtgaccTgcattttcacagaagcaccc	8	16	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169644499	A	A	169644499	3	1	91	1	0	0	0	0	1	0	0	0	13935	1580	55	5	463	5	SAMD7	3	169644499	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2371971	169644499	28377931	255	92249											
SLC2A2	6514	broad.mit.edu	37	chr3	170744601	170744601	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaggagagggaggagttGggctacccagacctgagagt	17	7	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170744601	A	A	170744601	1	1	91	0	1	0	0	0	0	0	0	0	14658	1363	47	4		4	SLC2A2	3	170744601	5'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1100102	170744601	27277829	256	92250											
KCNMB2	10242	broad.mit.edu	37	chr3	178560320	178560320	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaggcaccagtttgaatatGaaaagaataaccaccatggt	8	7	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178560320	T	T	178560320	1	4	91	0	1	0	0	0	0	0	0	0	8145	1305	45	3		3	KCNMB2	3	178560320	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7815719	178560320	19462110	257	92251											
NDUFB5	4711	broad.mit.edu	37	chr3	179336201	179336201	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacgaattttctcttgtAgcatcccatatcaagatgga	6	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179336201	T	T	179336201	5	4	91	1	0	0	0	0	0	0	1	0	10379	434	15	5	359	5	NDUFB5	3	179336201	Splice_Site	SNP	A	TCGA-17-Z062-01A-01W-0747-08	775881	179336201	18686229	258	92252											
ATP11B	23200	broad.mit.edu	37	chr3	182559797	182559797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaacaaaggatggtGcaaaaaaacagccattgatg	8	5	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182559797	T	T	182559797	1	4	91	0	1	0	0	0	0	0	0	0	1124	1334	46	3		3	ATP11B	3	182559797	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3223596	182559797	15462633	259	92253											
HTR3E	285242	broad.mit.edu	37	chr3	183823873	183823873	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattggaagagaagaaattcTaggtggtgcctctggccctc	13	8	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183823873	A	A	183823873	1	1	91	0	1	0	0	0	0	0	0	0	7518	1537	53	5		5	HTR3E	3	183823873	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1264076	183823873	14198557	260	92254											
DGKG	1608	broad.mit.edu	37	chr3	186015948	186015948	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccaggaagaggtgagtgCtcagtggctggggaaggtcc	19	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186015948	T	T	186015948	3	4	91	1	0	0	0	0	1	0	0	0	4509	797	28	4	2248	4	DGKG	3	186015948	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2192075	186015948	12006482	261	92255											
EIF4A2	1974	broad.mit.edu	37	chr3	186501348	186501348	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgagcctataaaaaacggGtggttgggcgccgctgtctt	13	10	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186501348	T	T	186501348	1	4	91	0	1	0	0	0	0	0	0	0	5067	1276	44	3		3	EIF4A2	3	186501348	5'Flank	SNP	G	TCGA-17-Z062-01A-01W-0747-08	485400	186501348	11521082	262	92256											
LEPREL1	55214	broad.mit.edu	37	chr3	189681780	189681780	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgggtccaaggtgaaccaCagagccacagcacacctctt	10	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189681780	A	A	189681780	2	1	91	1	0	0	0	0	0	0	0	1	8802	465	17	3		3	LEPREL1	3	189681780	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3180432	189681780	8340650	263	92257											
UTS2D	257313	broad.mit.edu	37	chr3	191000000	191000000	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaaaaccttctggacTagcaaagaaacagactttcc	5	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191000000	C	C	191000000	1	2	91	0	1	0	0	0	0	0	0	0	17232	1537	53	5		5	UTS2D	3	191000000	5'UTR	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1318220	191000000	7022430	264	92258											
PYDC2	152138	broad.mit.edu	37	chr3	191179090	191179090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccgtcccccagacagagGtagacaaggctaatgggaag	13	10	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191179090	T	T	191179090	3	4	91	1	0	0	0	0	1	0	0	0	12967	1261	44	3	141	3	PYDC2	3	191179090	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	179090	191179090	6843340	265	92259											
ATP13A4	84239	broad.mit.edu	37	chr3	193201895	193201895	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatagagcactgtcttacTgccagttgaatggaatgtac	10	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193201895	A	A	193201895	1	1	91	0	1	0	0	0	0	0	0	0	1130	1595	55	5		5	ATP13A4	3	193201895	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2022805	193201895	4820535	266	92260											
UBXN7	26043	broad.mit.edu	37	chr3	196088762	196088762	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatctgttccctttttccatCtggataccgcaacatcagct	6	13	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196088762	T	T	196088762	3	4	91	1	0	0	0	0	1	0	0	0	17044	913	32	4	216	4	UBXN7	3	196088762	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2886867	196088762	1933668	267	92261											
ZNF595	152687	broad.mit.edu	37	chr4	60024	60024	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcaatttgaagatacaTgagacagcagccaaaccccc	7	14	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60024	C	C	60024	2	2	91	1	0	0	0	0	0	0	0	1	18152	1461	51	5		5	ZNF595	4	60024	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08		60024	191094252	268	92262											
HGFAC	3083	broad.mit.edu	37	chr4	3444491	3444491	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccccagaacctaatgccacAgcgacccctgcgatccccac	6	20	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3444491	T	T	3444491	2	4	91	1	0	0	0	0	0	0	0	1	7153	175	7	5		5	HGFAC	4	3444491	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3384467	3444491	187709785	269	92263											
ZBTB49	166793	broad.mit.edu	37	chr4	4304168	4304168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatacttcagatggcagctGcacagaactgcctttcaaac	8	11	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4304168	T	T	4304168	3	4	91	1	0	0	0	0	1	0	0	0	17676	1319	46	3	611	3	ZBTB49	4	4304168	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	859677	4304168	186850108	270	92264											
EVC2	132884	broad.mit.edu	37	chr4	5642338	5642338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcttgtttccaggtcaCattcagctgtcaatgccacc	6	13	5	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5642338	A	A	5642338	3	1	91	1	0	0	0	0	1	0	0	0	5328	478	17	3	2605	3	EVC2	4	5642338	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1338170	5642338	185511938	271	92265											
DRD5	1816	broad.mit.edu	37	chr4	9784075	9784075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtggaccgctactgggCcatctccaggcccttccgct	11	17	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9784075	A	A	9784075	3	1	91	1	0	0	0	0	1	0	0	0	4800	739	26	3	424	3	DRD5	4	9784075	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4141737	9784075	181370201	272	92266											
CD38	952	broad.mit.edu	37	chr4	15842076	15842076	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcttctttcttccccagaGacttatgccaggatcccacc	5	15	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15842076	T	T	15842076	3	4	91	1	0	0	0	0	1	0	0	0	3039	956	33	3	780	3	CD38	4	15842076	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	6058001	15842076	175312200	273	92267											
FGFBP2	83888	broad.mit.edu	37	chr4	15964725	15964725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggcaggacaaggtcaCcagcaggaggcaggggacga	16	12	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15964725	A	A	15964725	3	1	91	1	0	0	0	0	1	0	0	0	5918	507	18	3	647	3	FGFBP2	4	15964725	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	122649	15964725	175189551	274	92268											
SLIT2	9353	broad.mit.edu	37	chr4	20523954	20523954	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaagtggccagtggattAtctccataccaaccctattg	7	12	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20523954	C	C	20523954	1	2	91	0	1	0	0	0	0	0	0	0	14854	464	16	5		5	SLIT2	4	20523954	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	4559229	20523954	170630322	275	92269											
PPARGC1A	10891	broad.mit.edu	37	chr4	23886435	23886435	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatttctgattggtcactGcaccacttgagtccacccag	7	12	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23886435	A	A	23886435	2	1	91	1	0	0	0	0	0	0	0	1	12396	1311	46	4		4	PPARGC1A	4	23886435	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3362481	23886435	167267841	276	92270											
PCDH7	5099	broad.mit.edu	37	chr4	31144176	31144176	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccactcagactcctgctGgatgccggtccgcacttctc	10	16	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31144176	A	A	31144176	4	1	91	1	0	0	0	0	0	1	0	0	11610	1357	47	4	3568	4	PCDH7	4	31144176	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7257741	31144176	160010100	277	92271											
TLR6	10333	broad.mit.edu	37	chr4	38830606	38830606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtgagcaattggcagCaaatctaatttttgcagctt	9	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38830606	A	A	38830606	3	1	91	1	0	0	0	0	1	0	0	0	16078	709	25	3	1905	3	TLR6	4	38830606	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7686430	38830606	152323670	278	92272											
CHRNA9	55584	broad.mit.edu	37	chr4	40337915	40337915	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgaagattattctaatgctCttcgtccagtggaagataca	8	7	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40337915	G	G	40337915	3	3	91	1	0	0	0	0	1	0	0	0	3420	913	32	4	142	4	CHRNA9	4	40337915	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1507309	40337915	150816361	279	92273											
APBB2	323	broad.mit.edu	37	chr4	40818215	40818215	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttactgaatctgctggcGgtggaggtggtcgaactttc	15	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40818215	A	A	40818215	3	1	91	1	0	0	0	0	1	0	0	0	763	1116	39	4	109	4	APBB2	4	40818215	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	480300	40818215	150336061	280	92274											
GABRA4	2557	broad.mit.edu	37	chr4	46980938	46980938	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtttaattagggattcTttaggtttctggctttgtgt	10	3	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46980938	C	C	46980938	1	2	91	0	1	0	0	0	0	0	0	0	6223	1624	56	5		5	GABRA4	4	46980938	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	6162723	46980938	144173338	281	92275											
SCFD2	152579	broad.mit.edu	37	chr4	54231838	54231838	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgactgcggcagatgatgtCccgtaggatctccacggtcc	13	12	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54231838	T	T	54231838	3	4	91	1	0	0	0	0	1	0	0	0	14002	855	30	4	1819	4	SCFD2	4	54231838	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7250900	54231838	136922438	282	92276											
LPHN3	23284	broad.mit.edu	37	chr4	62542642	62542642	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgaagtgcagtatgaatGtgtcccttacagtatgtata	9	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62542642	A	A	62542642	3	1	91	1	0	0	0	0	1	0	0	0	9004	1377	48	4	378	4	LPHN3	4	62542642	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	8310804	62542642	128611634	283	92277											
LPHN3	23284	broad.mit.edu	37	chr4	62778449	62778449	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggattcagcttcagaaaagaGagcgctcttgcagagcctat	11	9	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62778449	T	T	62778449	4	4	91	1	0	0	0	0	0	1	0	0	9004	943	33	3	1920	3	LPHN3	4	62778449	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	235807	62778449	128375827	284	92278											
EPHA5	2044	broad.mit.edu	37	chr4	66197696	66197696	+	Frame_Shift_Del	DEL	G	-	-													agaaaaattactcactccaaGgtcacctgagccacagcgtc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66197696	-	-	66197696	7	5	91	1	0	1	0	1	0	0	0	0	5212	987	35	0	118	0	EPHA5	4	66197696	Frame_Shift_Del	DEL	G	TCGA-17-Z062-01A-01W-0747-08	3419247	66197696	124956580	285	92279											
STAP1	26228	broad.mit.edu	37	chr4	68449312	68449312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttttatacagtgtcccGgaaagaggcaactgagatgc	11	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68449312	T	T	68449312	3	4	91	1	0	0	0	0	1	0	0	0	15370	1116	39	1	573	1	STAP1	4	68449312	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2251616	68449312	122704964	286	92280											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68928292	68928292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaacgcctgccatctacGtacttgccgtccttttgact	7	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68928292	T	T	68928292	1	4	91	0	1	0	0	0	0	0	0	0	16366	1160	40	3		3	TMPRSS11F	4	68928292	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	478980	68928292	122225984	287	92281											
UGT2B28	54490	broad.mit.edu	37	chr4	70155317	70155317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcattcctaccctttttaCagttctaacattctataatt	1	11	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70155317	A	A	70155317	1	1	91	0	1	0	0	0	0	0	0	0	17086	493	17	3		3	UGT2B28	4	70155317	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1227025	70155317	120998959	288	92282											
UGT2A1	10941	broad.mit.edu	37	chr4	70504767	70504767	+	Intron	SNP	G	T	T													tgccggtacataggagactgGtgctgggattttcccacagt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70504767	T	T	70504767	1	4	91	0	1	0	0	0	0	0	0	0	17079	1261	44	3		3	UGT2A1	4	70504767	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	349450	70504767	120649509	289	92283	413	2									
UGT2A1	10941	broad.mit.edu	37	chr4	70504773	70504773	+	Intron	SNP	G	T	T													tacataggagactggtgctgGgattttcccacagtgtctct							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70504773	T	T	70504773	1	4	91	0	1	0	0	0	0	0	0	0	17079	1232	43	2		2	UGT2A1	4	70504773	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	6	70504773	120649503	290	92284	413	2									
C4orf7	260436	broad.mit.edu	37	chr4	71099996	71099996	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattggaatccataatttcaAggaaaaaaaaatgttaacta	6	4	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71099996	T	T	71099996	1	4	91	0	1	0	0	0	0	0	0	0	2302	87	3	5		5	C4orf7	4	71099996	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	595223	71099996	120054280	291	92285											
MUC7	4589	broad.mit.edu	37	chr4	71346973	71346973	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccacagctgccccacccaCaccttctgcaactacaccag	4	21	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71346973	T	T	71346973	3	4	91	1	0	0	0	0	1	0	0	0	10075	478	17	4	518	4	MUC7	4	71346973	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	246977	71346973	119807303	292	92286											
ENAM	10117	broad.mit.edu	37	chr4	71510376	71510376	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactccatctagcgatggaaGgcaaagcccatttgatgggg	12	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71510376	A	A	71510376	3	1	91	1	0	0	0	0	1	0	0	0	5154	1000	35	4	3263	4	ENAM	4	71510376	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	163403	71510376	119643900	293	92287											
ADAMTS3	9508	broad.mit.edu	37	chr4	73148812	73148812	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgggaagagagaggttgtCcaggttttcctctggtttct	13	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73148812	A	A	73148812	1	1	91	0	1	0	0	0	0	0	0	0	267	870	30	3		3	ADAMTS3	4	73148812	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1638436	73148812	118005464	294	92288											
ANKRD17	26057	broad.mit.edu	37	chr4	73941944	73941944	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggctaacaagctgatcCtcatcagccaagctggttca	9	12	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73941944	A	A	73941944	1	1	91	0	1	0	0	0	0	0	0	0	646	696	24	2		2	ANKRD17	4	73941944	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	793132	73941944	117212332	295	92289											
ALB	213	broad.mit.edu	37	chr4	74284072	74284072	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtttgtagtcttgatagCaagaactgtcaattcaagct	9	6	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74284072	G	G	74284072	1	3	91	0	1	0	0	0	0	0	0	0	486	725	25	4		4	ALB	4	74284072	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	342128	74284072	116870204	296	92290											
CXCL9	4283	broad.mit.edu	37	chr4	76928455	76928455	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttactcttcaatgcaggcagAacattcacctttatctggct	6	11	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76928455	T	T	76928455	1	4	91	0	1	0	0	0	0	0	0	0	4122	261	9	5		5	CXCL9	4	76928455	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2644383	76928455	114225821	297	92291											
CXCL9	4283	broad.mit.edu	37	chr4	76928476	76928476	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattcacctttatctggctAatcaagattcttttacagtg	5	9	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76928476	G	G	76928476	1	3	91	0	1	0	0	0	0	0	0	0	4122	377	13	5		5	CXCL9	4	76928476	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	21	76928476	114225800	298	92292											
ART3	419	broad.mit.edu	37	chr4	77002949	77002949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactgaatttcttatttcaAgagtattaatttctttttcc	3	7	4	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77002949	T	T	77002949	1	4	91	0	1	0	0	0	0	0	0	0	1002	87	3	5		5	ART3	4	77002949	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	74473	77002949	114151327	299	92293											
C4orf22	255119	broad.mit.edu	37	chr4	81283972	81283972	+	Frame_Shift_Del	DEL	G	-	-													gactggagagagagtgaaaaGggaagattttgaagcaagga							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81283972	-	-	81283972	7	5	91	1	0	1	0	1	0	0	0	0	2278	1000	35	0	182	0	C4orf22	4	81283972	Frame_Shift_Del	DEL	G	TCGA-17-Z062-01A-01W-0747-08	4281023	81283972	109870304	300	92294											
TMEM150C	441027	broad.mit.edu	37	chr4	83406886	83406886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagtctggggagaagcaGtcaaggaaaataccctcatc	11	8	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83406886	T	T	83406886	1	4	91	0	1	0	0	0	0	0	0	0	16192	1044	36	3		3	TMEM150C	4	83406886	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2122914	83406886	107747390	301	92295											
AGPAT9	84803	broad.mit.edu	37	chr4	84516118	84516118	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggttactaagaggtaaGcagtgaaattactcagcatt	9	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84516118	A	A	84516118	1	1	91	0	1	0	0	0	0	0	0	0	392	986	34	4		4	AGPAT9	4	84516118	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1109232	84516118	106638158	302	92296											
PTPN13	5783	broad.mit.edu	37	chr4	87691181	87691181	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatttttaatgatgagatGgattggcctttcagaatggt	11	4	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87691181	A	A	87691181	1	1	91	0	1	0	0	0	0	0	0	0	12888	1363	47	4		4	PTPN13	4	87691181	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3175063	87691181	103463095	303	92297											
PTPN13	5783	broad.mit.edu	37	chr4	87730931	87730931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaatttcagaccagagagGtgcgccatatttctcatctg	8	10	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87730931	A	A	87730931	3	1	91	1	0	0	0	0	1	0	0	0	12888	1261	44	4	7286	4	PTPN13	4	87730931	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	39750	87730931	103423345	304	92298											
GRID2	2895	broad.mit.edu	37	chr4	94693482	94693482	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagctgcttctggtttcActtttggcaacgtgcctgag	10	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94693482	T	T	94693482	3	4	91	1	0	0	0	0	1	0	0	0	6838	159	6	5	2919	5	GRID2	4	94693482	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	6962551	94693482	96460794	305	92299											
BMPR1B	658	broad.mit.edu	37	chr4	96075791	96075791	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggttaagaaaacacttgcCaaaatgtcagagtcccagga	10	9	1	2	rs140430323	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96075791	A	A	96075791	2	1	91	1	0	0	0	0	0	0	0	1	1476	581	21	2		2	BMPR1B	4	96075791	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1382309	96075791	95078485	306	92300											
PDHA2	5161	broad.mit.edu	37	chr4	96762352	96762352	+	Frame_Shift_Del	DEL	G	-	-													ttgatgatgctgcccagtttGctaccactgatcctgagcca							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96762352	-	-	96762352	7	5	91	1	0	1	0	1	0	0	0	0	11759	1319	46	0	1053	0	PDHA2	4	96762352	Frame_Shift_Del	DEL	G	TCGA-17-Z062-01A-01W-0747-08	686561	96762352	94391924	307	92301											
ADH4	127	broad.mit.edu	37	chr4	100062612	100062612	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaatagagatcaattataGcatgccaagccaggactcta	8	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100062612	A	A	100062612	1	1	91	0	1	0	0	0	0	0	0	0	310	986	34	4		4	ADH4	4	100062612	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3300260	100062612	91091664	308	92302											
C4orf17	84103	broad.mit.edu	37	chr4	100434183	100434183	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtgaggtcaatcaagttaGaccccaaaaacttttgtgac	8	8	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100434183	T	T	100434183	1	4	91	0	1	0	0	0	0	0	0	0	2275	957	33	3		3	C4orf17	4	100434183	5'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	371571	100434183	90720093	309	92303											
ALPK1	80216	broad.mit.edu	37	chr4	113303476	113303476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttgccactgagGtgcttcatcataacattggt	7	7	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113303476	T	T	113303476	1	4	91	0	1	0	0	0	0	0	0	0	544	1276	44	3		3	ALPK1	4	113303476	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	12869293	113303476	77850800	310	92304											
ANK2	287	broad.mit.edu	37	chr4	114276798	114276798	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctaaagagacacctacaGgactgactgaggaggcagcc	12	10	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114276798	T	T	114276798	4	4	91	1	0	0	0	0	0	1	0	0	621	1001	35	2	7239	2	ANK2	4	114276798	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	973322	114276798	76877478	311	92305											
NDST3	9348	broad.mit.edu	37	chr4	118975786	118975786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgccaaagtaaagaccCcagaaaacctttctccttcc	4	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118975786	A	A	118975786	3	1	91	1	0	0	0	0	1	0	0	0	10352	623	22	2	723	2	NDST3	4	118975786	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4698988	118975786	72178490	312	92306											
PRSS12	8492	broad.mit.edu	37	chr4	119259402	119259402	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctacagacagtgccccaAactccacttgcatatacttc	5	15	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119259402	T	T	119259402	2	4	91	1	0	0	0	0	0	0	0	1	12721	1	1	5		5	PRSS12	4	119259402	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	283616	119259402	71894874	313	92307											
KIAA1109	84162	broad.mit.edu	37	chr4	123122323	123122323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagtgagatttatcacaGtgaacttgtttacatttgat	7	5	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123122323	T	T	123122323	1	4	91	0	1	0	0	0	0	0	0	0	8278	1044	36	3		3	KIAA1109	4	123122323	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3862921	123122323	68031953	314	92308											
SCLT1	132320	broad.mit.edu	37	chr4	129886314	129886314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattctagtaaatatcacaCactgaaactctattgtaaaa	3	7	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129886314	A	A	129886314	1	1	91	0	1	0	0	0	0	0	0	0	14019	493	17	3		3	SCLT1	4	129886314	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6763991	129886314	61267962	315	92309											
PRMT10	90826	broad.mit.edu	37	chr4	148605077	148605077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcgacaccagctcgtccCggccggctgccccagcgcca	11	21	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148605077	A	A	148605077	3	1	91	1	0	0	0	0	1	0	0	0	12642	652	23	1	2523	1	PRMT10	4	148605077	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	18718763	148605077	42549199	316	92310											
KLHL2	11275	broad.mit.edu	37	chr4	166231931	166231931	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttttcatttattctacattGctgctaaaattaacgtagta	4	7	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166231931	C	C	166231931	1	2	91	0	1	0	0	0	0	0	0	0	8445	1334	46	4		4	KLHL2	4	166231931	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	17626854	166231931	24922345	317	92311											
ANXA10	11199	broad.mit.edu	37	chr4	169049310	169049310	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaggaggagcactccaaGgatttggtaagtctgattat	12	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169049310	T	T	169049310	4	4	91	1	0	0	0	0	0	1	0	0	715	1001	35	2	100	2	ANXA10	4	169049310	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2817379	169049310	22104966	318	92312											
ANXA10	11199	broad.mit.edu	37	chr4	169105645	169105645	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagaaaaggggtgtgtccActtgggacagactgactttt	12	7	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169105645	T	T	169105645	1	4	91	0	1	0	0	0	0	0	0	0	715	174	6	5		5	ANXA10	4	169105645	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	56335	169105645	22048631	319	92313											
NEK1	4750	broad.mit.edu	37	chr4	170327885	170327885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagagatctggaagtgaaCatgtccttaacatctaaaat	8	6	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170327885	A	A	170327885	3	1	91	1	0	0	0	0	1	0	0	0	10416	478	17	3	644	3	NEK1	4	170327885	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1222240	170327885	20826391	320	92314											
HMGB2	3148	broad.mit.edu	37	chr4	174254163	174254163	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatctgaaaggaagcaacaGagtttaataaactgaaggaa	10	4	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174254163	A	A	174254163	1	1	91	0	1	0	0	0	0	0	0	0	7293	957	33	4		4	HMGB2	4	174254163	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3926278	174254163	16900113	321	92315											
WDR17	116966	broad.mit.edu	37	chr4	177069408	177069408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctcatatctggcagctggGactatactataaaagtatgg	10	7	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177069408	T	T	177069408	3	4	91	1	0	0	0	0	1	0	0	0	17404	1174	41	3	1941	3	WDR17	4	177069408	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2815245	177069408	14084868	322	92316											
C4orf41	60684	broad.mit.edu	37	chr4	184614791	184614791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatctgctacatgaacccCctgcactgactaatgaaatg	6	12	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184614791	A	A	184614791	3	1	91	1	0	0	0	0	1	0	0	0	2293	623	22	2	2365	2	C4orf41	4	184614791	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7545383	184614791	6539485	323	92317											
ENPP6	133121	broad.mit.edu	37	chr4	185037979	185037979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacgagggcccacatggcCctcctccgccccccacgggt	10	21	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185037979	A	A	185037979	1	1	91	0	1	0	0	0	0	0	0	0	5176	638	22	2		2	ENPP6	4	185037979	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	423188	185037979	6116297	324	92318											
FAT1	2195	broad.mit.edu	37	chr4	187540406	187540406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgagagggtgataatcCctgttgcactgtcaatgaca	12	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187540406	A	A	187540406	3	1	91	1	0	0	0	0	1	0	0	0	5746	623	22	2	6504	2	FAT1	4	187540406	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2502427	187540406	3613870	325	92319											
PLEKHG4B	153478	broad.mit.edu	37	chr5	157021	157021	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtcactcctggaagggaatGaccaggtcagagctgcagga	14	10	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157021	C	C	157021	3	2	91	1	0	0	0	0	1	0	0	0	12167	1290	45	4	1448	4	PLEKHG4B	5	157021	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08		157021	180758239	326	92320											
CEP72	55722	broad.mit.edu	37	chr5	620435	620435	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtggggtatgggagtcgggGagtcgtagtgggtgtctgtg	22	4	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	620435	T	T	620435	1	4	91	0	1	0	0	0	0	0	0	0	3290	1189	41	3		3	CEP72	5	620435	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	463414	620435	180294825	327	92321											
IRX2	153572	broad.mit.edu	37	chr5	2748676	2748676	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagaagggcgacgtgtagtaGagggggcggcccagcagcgg	20	8	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2748676	A	A	2748676	2	1	91	1	0	0	0	0	0	0	0	1	7914	929	33	4		4	IRX2	5	2748676	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2128241	2748676	178166584	328	92322											
ADAMTS16	170690	broad.mit.edu	37	chr5	5182390	5182390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgggactgccacaaaaGcagcatttctgtggaagacg	12	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5182390	T	T	5182390	3	4	91	1	0	0	0	0	1	0	0	0	261	962	34	3	749	3	ADAMTS16	5	5182390	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2433714	5182390	175732870	329	92323											
ADAMTS16	170690	broad.mit.edu	37	chr5	5190277	5190277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtgtgaggaccgtgtGtggaatgtgcacccctggcc	16	10	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5190277	T	T	5190277	1	4	91	0	1	0	0	0	0	0	0	0	261	1392	48	3		3	ADAMTS16	5	5190277	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7887	5190277	175724983	330	92324											
TRIO	7204	broad.mit.edu	37	chr5	14364713	14364714	+	Intron	INS	-	T	T													caccctttgagaacagaaggINSttgaagtgctagctgaattc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14364714	T	T	14364713	6	5	91	0	1	1	1	0	0	0	0	0	16677	1276	44	0		0	TRIO	5	14364713	Intron	INS	-	TCGA-17-Z062-01A-01W-0747-08	9174436	14364713	166550547	331	92325											
CDH18	1016	broad.mit.edu	37	chr5	19747108	19747108	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccatctgtgaattttggagCgttgtcattgatgtcttgca	10	7	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19747108	G	G	19747108	3	3	91	1	0	0	0	0	1	0	0	0	3133	768	27	4	1946	4	CDH18	5	19747108	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5382395	19747108	161168152	332	92326											
CDH12	1010	broad.mit.edu	37	chr5	21752406	21752406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataggtcatttcatctctcCataaaaattaaaaatgatta	4	6	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21752406	A	A	21752406	1	1	91	0	1	0	0	0	0	0	0	0	3128	609	21	2		2	CDH12	5	21752406	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2005298	21752406	159162854	333	92327											
CDH12	1010	broad.mit.edu	37	chr5	21854832	21854832	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctgaagaatgctgtaaacGactctggcactgtttccata	8	11	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21854832	T	T	21854832	2	4	91	1	0	0	0	0	0	0	0	1	3128	1045	37	3		3	CDH12	5	21854832	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	102426	21854832	159060428	334	92328											
PRDM9	56979	broad.mit.edu	37	chr5	23522300	23522300	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttaaagagggggacactAgagtatgtagaaaggtagat	14	2	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23522300	G	G	23522300	1	3	91	0	1	0	0	0	0	0	0	0	12569	435	15	5		5	PRDM9	5	23522300	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1667468	23522300	157392960	335	92329											
RNASEN	29102	broad.mit.edu	37	chr5	31410834	31410835	+	Intron	DEL	AA	-	-													ctgaacctggaggttgagagAaaagtgtgtggcactcacat							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31410835	-	-	31410834	6	5	91	0	1	1	0	1	0	0	0	0	13528	261	9	0		0	RNASEN	5	31410834	Intron	DEL	AA	TCGA-17-Z062-01A-01W-0747-08	7888534	31410834	149504426	336	92330											
C5orf22	55322	broad.mit.edu	37	chr5	31532420	31532420	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcttccgcccggagagagCtggccgggatgaggcgccgg	19	13	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31532420	A	A	31532420	1	1	91	1	0	0	0	0	0	0	0	0	2308	812	28	3		3	C5orf22	5	31532420	Translation_Start_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	121586	31532420	149382840	337	92331											
ADAMTS12	81792	broad.mit.edu	37	chr5	33534876	33534876	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaagctatctacaagttgTatcatgcaggatgacatttg	9	6	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33534876	C	C	33534876	1	2	91	0	1	0	0	0	0	0	0	0	257	1653	57	5		5	ADAMTS12	5	33534876	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2002456	33534876	147380384	338	92332											
ADAMTS12	81792	broad.mit.edu	37	chr5	33549430	33549430	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaggttccggtggtccCggctgtccacgcactgaatc	12	15	1	1	rs147732973		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33549430	G	G	33549430	3	3	91	1	0	0	0	0	1	0	0	0	257	652	23	4	616	4	ADAMTS12	5	33549430	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	14554	33549430	147365830	339	92333											
ADAMTS12	81792	broad.mit.edu	37	chr5	33624300	33624300	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcttgccccccacctttgGtcccctgccacttcgattat	5	17	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33624300	C	C	33624300	1	2	91	0	1	0	0	0	0	0	0	0	257	1276	44	4		4	ADAMTS12	5	33624300	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	74870	33624300	147290960	340	92334											
ADAMTS12	81792	broad.mit.edu	37	chr5	33631049	33631049	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaggcaaagccttgcAaattagcttttagctcagca	8	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33631049	G	G	33631049	1	3	91	0	1	0	0	0	0	0	0	0	257	145	5	5		5	ADAMTS12	5	33631049	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	6749	33631049	147284211	341	92335											
SPEF2	79925	broad.mit.edu	37	chr5	35773914	35773914	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatagcttaacaaactttgcTttgtgctcattctgtccaag	6	9	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35773914	G	G	35773914	1	3	91	0	1	0	0	0	0	0	0	0	15153	1624	56	5		5	SPEF2	5	35773914	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2142865	35773914	145141346	342	92336											
CAPSL	133690	broad.mit.edu	37	chr5	35910691	35910691	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagaaatgtacaaataacAggtgtaagtgtaaagattaa	9	2	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35910691	T	T	35910691	1	4	91	0	1	0	0	0	0	0	0	0	2665	203	7	5		5	CAPSL	5	35910691	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	136777	35910691	145004569	343	92337											
GHR	2690	broad.mit.edu	37	chr5	42719054	42719054	+	Frame_Shift_Del	DEL	C	-	-													aagcaatccaagttcactgtCaaacatcgacttttatgccc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42719054	-	-	42719054	7	5	91	1	0	1	0	1	0	0	0	0	6435	838	29	0	1479	0	GHR	5	42719054	Frame_Shift_Del	DEL	C	TCGA-17-Z062-01A-01W-0747-08	6808363	42719054	138196206	344	92338											
MGC42105	167359	broad.mit.edu	37	chr5	43245925	43245925	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctggtgaacccccactaTgcccggtgggatcggcgcga	15	14	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43245925	C	C	43245925	2	2	91	1	0	0	0	0	0	0	0	1	9645	1471	51	5		5	MGC42105	5	43245925	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	526871	43245925	137669335	345	92339											
HCN1	348980	broad.mit.edu	37	chr5	45262453	45262453	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcggggacggctgctgtGgctgagtctgcggcggctgg	21	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45262453	A	A	45262453	3	1	91	1	0	0	0	0	1	0	0	0	7062	1348	47	4	433	4	HCN1	5	45262453	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2016528	45262453	135652807	346	92340											
HCN1	348980	broad.mit.edu	37	chr5	45267412	45267412	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcattttcttttaaaagcCattaaggcttcccacaactt	4	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45267412	T	T	45267412	1	4	91	0	1	0	0	0	0	0	0	0	7062	609	21	4		4	HCN1	5	45267412	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4959	45267412	135647848	347	92341											
ZNF366	167465	broad.mit.edu	37	chr5	71743271	71743271	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagatggggatgagaacacaGgttactctgcccgagtgaag	14	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71743271	C	C	71743271	1	2	91	0	1	0	0	0	0	0	0	0	17996	1015	35	4		4	ZNF366	5	71743271	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	26475859	71743271	109171989	348	92342											
IQGAP2	10788	broad.mit.edu	37	chr5	75954410	75954410	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagtagtgaccaagatcaGggccaatcaacagctggaaa	11	8	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75954410	A	A	75954410	3	1	91	1	0	0	0	0	1	0	0	0	7885	1000	35	4	2529	4	IQGAP2	5	75954410	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4211139	75954410	104960850	349	92343											
MSH3	4437	broad.mit.edu	37	chr5	80040324	80040324	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttttctggtctttcttaGactgatatgaaaaccaaagg	8	6	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80040324	T	T	80040324	5	4	91	1	0	0	0	0	0	0	1	0	9965	956	33	3	1699	3	MSH3	5	80040324	Splice_Site	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4085914	80040324	100874936	350	92344											
RASGRF2	5924	broad.mit.edu	37	chr5	80409657	80409657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcctctcttctccagaGcaaagcccgggaacggtaga	12	12	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80409657	T	T	80409657	3	4	91	1	0	0	0	0	1	0	0	0	13181	962	34	3	2446	3	RASGRF2	5	80409657	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	369333	80409657	100505603	351	92345											
ACOT12	134526	broad.mit.edu	37	chr5	80631424	80631424	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaactcccggactcaactatCcacctgcctcagcctcccaa	5	19	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80631424	T	T	80631424	1	4	91	0	1	0	0	0	0	0	0	0	150	870	30	4		4	ACOT12	5	80631424	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	221767	80631424	100283836	352	92346											
XRCC4	7518	broad.mit.edu	37	chr5	82649012	82649012	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagctgaaaacatgtcttTagaaactctgagaaacagca	7	9	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82649012	C	C	82649012	3	2	91	1	0	0	0	0	1	0	0	0	17582	1764	61	5	988	5	XRCC4	5	82649012	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2017588	82649012	98266248	353	92347											
ANKRD32	84250	broad.mit.edu	37	chr5	94022207	94022207	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacagaataaacttcactaAggaaatagcctatggaaaaa	7	6	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94022207	G	G	94022207	1	3	91	0	1	0	0	0	0	0	0	0	660	87	3	5		5	ANKRD32	5	94022207	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	11373195	94022207	86893053	354	92348											
SEMA6A	57556	broad.mit.edu	37	chr5	115783221	115783221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgagcttgccgttgtgCatgagtggcgtgaggatggc	19	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115783221	A	A	115783221	3	1	91	1	0	0	0	0	1	0	0	0	14152	710	25	3	915	3	SEMA6A	5	115783221	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	21761014	115783221	65132039	355	92349											
SRFBP1	153443	broad.mit.edu	37	chr5	121355925	121355925	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcgtgaagcaactgtcatCagtgagcaaaaagtcaaaga	10	8	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121355925	T	T	121355925	2	4	91	1	0	0	0	0	0	0	0	1	15262	816	29	4		4	SRFBP1	5	121355925	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5572704	121355925	59559335	356	92350											
ZNF608	57507	broad.mit.edu	37	chr5	123983235	123983235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgctgtcagaaccaccatCgtcagcagcatcagatatgt	8	13	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123983235	A	A	123983235	3	1	91	1	0	0	0	0	1	0	0	0	18161	884	31	3	1720	3	ZNF608	5	123983235	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2627310	123983235	56932025	357	92351											
FBN2	2201	broad.mit.edu	37	chr5	127704782	127704782	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttcagttaaaattaatgatGaaacacttaagagctgatgt	7	5	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127704782	T	T	127704782	1	4	91	0	1	0	0	0	0	0	0	0	5760	1305	45	3		3	FBN2	5	127704782	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3721547	127704782	53210478	358	92352											
ADAMTS19	171019	broad.mit.edu	37	chr5	128864260	128864260	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaatgctagagagtttTtgtaagtggcaacatgaaga	11	3	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128864260	A	A	128864260	3	1	91	1	0	0	0	0	1	0	0	0	264	1838	64	5	1222	5	ADAMTS19	5	128864260	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1159478	128864260	52051000	359	92353											
FAM53C	51307	broad.mit.edu	37	chr5	137681298	137681298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttgacaagatgaatcaGgtgggaccagcaagactagg	13	7	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137681298	T	T	137681298	3	4	91	1	0	0	0	0	1	0	0	0	5632	1014	35	2	931	2	FAM53C	5	137681298	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	8817038	137681298	43233962	360	92354											
PCDHA7	56141	broad.mit.edu	37	chr5	140215324	140215324	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgacgtgaacgacaacgcCccggcgttcgcgcagcccga	13	17	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215324	A	A	140215324	2	1	91	1	0	0	0	0	0	0	0	1	11623	610	22	2		2	PCDHA7	5	140215324	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2534026	140215324	40699936	361	92355											
PCDHA11	56138	broad.mit.edu	37	chr5	140249939	140249939	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctggaccgcgagaacgtGtgggcctatgaactggtggt	16	10	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140249939	A	A	140249939	2	1	91	1	0	0	0	0	0	0	0	1	11615	1364	48	4		4	PCDHA11	5	140249939	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	34615	140249939	40665321	362	92356											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712208	140712208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggaccacggccagcccCcgctctccgccactgtcacg	9	21	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140712208	A	A	140712208	3	1	91	1	0	0	0	0	1	0	0	0	11644	623	22	2	1959	2	PCDHGA1	5	140712208	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	462269	140712208	40203052	363	92357											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740473	140740473	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagggaggacgtgccgccGggcttctttgtgcttcaagt	15	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140740473	T	T	140740473	2	4	91	1	0	0	0	0	0	0	0	1	11657	1103	39	1		1	PCDHGB2	5	140740473	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	28265	140740473	40174787	364	92358											
SPINK7	84651	broad.mit.edu	37	chr5	147693701	147693701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagtatccagtggtggcCatcccctgccccatcacata	8	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147693701	A	A	147693701	2	1	91	1	0	0	0	0	0	0	0	1	15182	581	21	2		2	SPINK7	5	147693701	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6953228	147693701	33221559	365	92359											
PDE6A	5145	broad.mit.edu	37	chr5	149312269	149312269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaatgctgccccactcaCcaaatgtgtaccaactactg	7	13	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149312269	A	A	149312269	1	1	91	0	1	0	0	0	0	0	0	0	11739	522	18	3		3	PDE6A	5	149312269	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1618568	149312269	31602991	366	92360											
LARP1	23367	broad.mit.edu	37	chr5	154183274	154183274	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacatcacggttttacccagTggtgaaagaaggacggacac	12	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154183274	A	A	154183274	3	1	91	1	0	0	0	0	1	0	0	0	8700	1696	59	5	2227	5	LARP1	5	154183274	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	4871005	154183274	26731986	367	92361											
LARP1	23367	broad.mit.edu	37	chr5	154185288	154185288	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagagttaatcagacccatGgatataagttaaaggtccgt	10	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154185288	C	C	154185288	1	2	91	0	1	0	0	0	0	0	0	0	8700	1363	47	4		4	LARP1	5	154185288	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2014	154185288	26729972	368	92362											
ITK	3702	broad.mit.edu	37	chr5	156608196	156608196	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgggctaatgcaaaaatAtatacatagcataaaataga	7	5	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156608196	G	G	156608196	1	3	91	0	1	0	0	0	0	0	0	0	7979	464	16	5		5	ITK	5	156608196	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2422908	156608196	24307064	369	92363											
ITK	3702	broad.mit.edu	37	chr5	156655369	156655369	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaataatctggaaacctaTgagtaagatattttatttgt	6	5	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156655369	A	A	156655369	4	1	91	1	0	0	0	0	0	1	0	0	7979	1471	51	5	737	5	ITK	5	156655369	Nonsense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	47173	156655369	24259891	370	92364											
DOCK2	1794	broad.mit.edu	37	chr5	169122864	169122864	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgatttgtcaaatagtcCgggtcggcaagatggatctt	11	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169122864	A	A	169122864	2	1	91	1	0	0	0	0	0	0	0	1	4727	643	23	1		1	DOCK2	5	169122864	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	12467495	169122864	11792396	371	92365											
CDHR2	54825	broad.mit.edu	37	chr5	176002010	176002010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagagctgggaccttcCctgcgttgctcagagtgggg	17	10	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176002010	A	A	176002010	1	1	91	0	1	0	0	0	0	0	0	0	3149	638	22	2		2	CDHR2	5	176002010	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6879146	176002010	4913250	372	92366											
ZNF346	23567	broad.mit.edu	37	chr5	176477987	176477987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccagggtttggccactgGggctacccggaccagctgac	15	13	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176477987	T	T	176477987	1	4	91	0	1	0	0	0	0	0	0	0	17986	1247	43	2		2	ZNF346	5	176477987	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	475977	176477987	4437273	373	92367											
RASGEF1C	255426	broad.mit.edu	37	chr5	179555436	179555436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtgggtcagctgctgggCcagtgtgtaggggtcgctgc	18	10	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179555436	A	A	179555436	3	1	91	1	0	0	0	0	1	0	0	0	13179	739	26	3	827	3	RASGEF1C	5	179555436	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3077449	179555436	1359824	374	92368											
EXOC2	55770	broad.mit.edu	37	chr6	564606	564606	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcacttcacctcccagcCtccgtactgcttggcttccc	6	20	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	564606	T	T	564606	3	4	91	1	0	0	0	0	1	0	0	0	5344	681	24	4	1224	4	EXOC2	6	564606	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08		564606	170550461	375	92369											
RIPK1	8737	broad.mit.edu	37	chr6	3111188	3111188	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaagtaccaagctatcttTggtaagataccctggaagga	10	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3111188	C	C	3111188	2	2	91	1	0	0	0	0	0	0	0	1	13491	1826	63	5		5	RIPK1	6	3111188	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2546582	3111188	168003879	376	92370											
C6orf146	222826	broad.mit.edu	37	chr6	4073415	4073415	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaatactattttcttctgGttgttcatggtccttgtatt	7	7	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4073415	A	A	4073415	1	1	91	0	1	0	0	0	0	0	0	0	2358	1276	44	4		4	C6orf146	6	4073415	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	962227	4073415	167041652	377	92371											
C6orf105	84830	broad.mit.edu	37	chr6	11768400	11768400	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtggtttccaattatgggctCccaaacagcttggctgccca	10	12	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11768400	G	G	11768400	1	3	91	0	1	0	0	0	0	0	0	0	2341	870	30	4		4	C6orf105	6	11768400	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7694985	11768400	159346667	378	92372											
PHACTR1	221692	broad.mit.edu	37	chr6	13206250	13206250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcaccagctgcagtacGgcagccacggccagcacctc	10	18	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13206250	T	T	13206250	3	4	91	1	0	0	0	0	1	0	0	0	11904	1116	39	1	890	1	PHACTR1	6	13206250	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1437850	13206250	157908817	379	92373											
BTN3A2	11118	broad.mit.edu	37	chr6	26377427	26377427	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagtggggagcctcaggctGaagtaacatctctgcttctc	11	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26377427	T	T	26377427	1	4	91	0	1	0	0	0	0	0	0	0	1573	1305	45	3		3	BTN3A2	6	26377427	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	13171177	26377427	144737640	380	92374											
BTN3A1	11119	broad.mit.edu	37	chr6	26407856	26407856	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttttgagaccctctctgAtacaggcctctcaagaattt	6	12	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26407856	T	T	26407856	1	4	91	0	1	0	0	0	0	0	0	0	1572	348	12	5		5	BTN3A1	6	26407856	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	30429	26407856	144707211	381	92375											
HIST1H3J	8356	broad.mit.edu	37	chr6	27861104	27861104	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgattggactatattgataTtaacgtcatctgagtaactt	7	5	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27861104	C	C	27861104	1	2	91	0	1	0	0	0	0	0	0	0	7231	1508	52	5		5	HIST1H3J	6	27861104	5'Flank	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1453248	27861104	143253963	382	92376											
ZNF165	7718	broad.mit.edu	37	chr6	28053456	28053456	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcctggacctcgcgaggcActgagccgcctccgggagct	13	16	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28053456	T	T	28053456	2	4	91	1	0	0	0	0	0	0	0	1	17866	146	6	5		5	ZNF165	6	28053456	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	192352	28053456	143061611	383	92377											
STK19	8859	broad.mit.edu	37	chr6	31940267	31940267	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgagggcctgtggagtcgGatcctcttcggggtgagcca	17	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31940267	A	A	31940267	3	1	91	1	0	0	0	0	1	0	0	0	15410	1174	41	4	415	4	STK19	6	31940267	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3886811	31940267	139174800	384	92378											
C6orf10	10665	broad.mit.edu	37	chr6	32260791	32260791	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttgttgtacttccttccTgtatttgccttcgccctttt	5	11	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32260791	A	A	32260791	2	1	91	1	0	0	0	0	0	0	0	1	2340	1567	55	5		5	C6orf10	6	32260791	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	320524	32260791	138854276	385	92379											
DAXX	1616	broad.mit.edu	37	chr6	33287889	33287891	+	In_Frame_Del	DEL	TCT	-	-													cagaatctgtggcctcctccTcttcttcttcctcctcctcc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33287891	-	-	33287889	7	5	91	1	0	1	0	1	0	0	0	0	4276	1551	54	0	874	0	DAXX	6	33287889	In_Frame_Del	DEL	TCT	TCGA-17-Z062-01A-01W-0747-08	1027098	33287889	137827178	386	92380											
ZBTB9	221504	broad.mit.edu	37	chr6	33423488	33423488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggagggaagtgaactggGagaagtgctgcaaattcagg	18	4	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33423488	T	T	33423488	3	4	91	1	0	0	0	0	1	0	0	0	17684	1174	41	3	613	3	ZBTB9	6	33423488	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	135599	33423488	137691579	387	92381											
ITPR3	3710	broad.mit.edu	37	chr6	33633091	33633091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagctgggcaaactggGgagagagtaggggactggcc	19	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33633091	T	T	33633091	1	4	91	0	1	0	0	0	0	0	0	0	7992	1247	43	2		2	ITPR3	6	33633091	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	209603	33633091	137481976	388	92382											
ANKS1A	23294	broad.mit.edu	37	chr6	35051100	35051100	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgggccctgctgcactAtgtaaggatgggaaggaagc	15	9	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35051100	G	G	35051100	1	3	91	0	1	0	0	0	0	0	0	0	688	464	16	5		5	ANKS1A	6	35051100	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1418009	35051100	136063967	389	92383											
PI16	221476	broad.mit.edu	37	chr6	36931594	36931594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaaagcctctttcttccCacaggtgcagagggccctga	11	13	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36931594	A	A	36931594	1	1	91	0	1	0	0	0	0	0	0	0	11964	609	21	2		2	PI16	6	36931594	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1880494	36931594	134183473	390	92384											
MDFI	4188	broad.mit.edu	37	chr6	41613837	41613837	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaggccccaggaaaatgGacctcagtcatctgcttttt	10	10	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41613837	T	T	41613837	1	4	91	0	1	0	0	0	0	0	0	0	9497	1189	41	3		3	MDFI	6	41613837	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4682243	41613837	129501230	391	92385											
SLC22A7	10864	broad.mit.edu	37	chr6	43267197	43267197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttcgccggtgtgctgGtgggggctgtggcctttgga	17	9	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43267197	T	T	43267197	3	4	91	1	0	0	0	0	1	0	0	0	14573	1261	44	3	475	3	SLC22A7	6	43267197	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1653360	43267197	127847870	392	92386											
RHAG	6005	broad.mit.edu	37	chr6	49582335	49582335	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgcagaaattacctacTacttatctgagcaactgtca	7	9	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49582335	C	C	49582335	1	2	91	0	1	0	0	0	0	0	0	0	13424	1537	53	5		5	RHAG	6	49582335	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	6315138	49582335	121532732	393	92387											
CRISP2	7180	broad.mit.edu	37	chr6	49667532	49667532	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catactggttttgcggtcctCtggatcactatgttgtaaag	10	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49667532	G	G	49667532	3	3	91	1	0	0	0	0	1	0	0	0	3912	922	32	4	495	4	CRISP2	6	49667532	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	85197	49667532	121447535	394	92388											
PKHD1	5314	broad.mit.edu	37	chr6	51889988	51889988	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctggggccaagtctctTgtctggcacacaacgtggct	13	12	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51889988	A	A	51889988	2	1	91	1	0	0	0	0	0	0	0	1	12066	1799	63	5		5	PKHD1	6	51889988	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2222456	51889988	119225079	395	92389											
TINAG	27283	broad.mit.edu	37	chr6	54219225	54219225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctccttgcaatttaccCattggttgttccgtgaaatt	6	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54219225	A	A	54219225	1	1	91	0	1	0	0	0	0	0	0	0	16044	609	21	2		2	TINAG	6	54219225	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2329237	54219225	116895842	396	92390											
DST	667	broad.mit.edu	37	chr6	56458660	56458660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgagaaactcttctgcCtcttcaatttggtcattaaa	5	10	6	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56458660	A	A	56458660	3	1	91	1	0	0	0	0	1	0	0	0	4823	681	24	2	11081	2	DST	6	56458660	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2239435	56458660	114656407	397	92391											
BAI3	577	broad.mit.edu	37	chr6	69949060	69949060	+	Frame_Shift_Del	DEL	T	-	-													aatactaattaacttctgccTgtctatcatctcatccaata							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69949060	-	-	69949060	7	5	91	1	0	1	0	1	0	0	0	0	1305	1580	55	0	2826	0	BAI3	6	69949060	Frame_Shift_Del	DEL	T	TCGA-17-Z062-01A-01W-0747-08	13490400	69949060	101166007	398	92392											
COL19A1	1310	broad.mit.edu	37	chr6	70847591	70847591	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagggtgaaactggactAccaggatttccagggtctgt	13	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70847591	T	T	70847591	2	4	91	1	0	0	0	0	0	0	0	1	3708	378	14	5		5	COL19A1	6	70847591	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	898531	70847591	100267476	399	92393											
COL19A1	1310	broad.mit.edu	37	chr6	70850712	70850712	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctgcaaagacagactgtGtgacactctgggtatttttg	11	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70850712	A	A	70850712	1	1	91	0	1	0	0	0	0	0	0	0	3708	1392	48	4		4	COL19A1	6	70850712	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3121	70850712	100264355	400	92394											
COL19A1	1310	broad.mit.edu	37	chr6	70875811	70875811	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaacgtctacgccgctgaTatgtctatatatcccttgca	7	11	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70875811	C	C	70875811	1	2	91	0	1	0	0	0	0	0	0	0	3708	1421	49	5		5	COL19A1	6	70875811	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	25099	70875811	100239256	401	92395											
GABRR1	2569	broad.mit.edu	37	chr6	89907909	89907909	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttgttggtgcttggaaaAgacagcctctcgtccttcca	11	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89907909	G	G	89907909	2	3	91	1	0	0	0	0	0	0	0	1	6236	59	3	5		5	GABRR1	6	89907909	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	19032098	89907909	81207158	402	92396											
QRSL1	55278	broad.mit.edu	37	chr6	107097159	107097159	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccagcaatagagtagttcAtatcctggtatttttctttc	6	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107097159	T	T	107097159	1	4	91	0	1	0	0	0	0	0	0	0	12989	232	8	5		5	QRSL1	6	107097159	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	17189250	107097159	64017908	403	92397											
BEND3	57673	broad.mit.edu	37	chr6	107389901	107389901	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaatctctgggcaggtcaCgggccttcacttctccactt	9	15	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107389901	A	A	107389901	1	1	91	0	1	0	0	0	0	0	0	0	1404	551	19	3		3	BEND3	6	107389901	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	292742	107389901	63725166	404	92398											
AKD1	221264	broad.mit.edu	37	chr6	109962787	109962787	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttagaatagctgctcttttTaggttcagatatttaagtcg	9	5	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109962787	C	C	109962787	2	2	91	1	0	0	0	0	0	0	0	1	460	1741	61	5		5	AKD1	6	109962787	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2572886	109962787	61152280	405	92399											
WASF1	8936	broad.mit.edu	37	chr6	110423279	110423279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagggggaggagttgaaGtcattgaagctcttaatgag	16	4	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110423279	T	T	110423279	3	4	91	1	0	0	0	0	1	0	0	0	17379	1029	36	3	653	3	WASF1	6	110423279	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	460492	110423279	60691788	406	92400											
DDO	8528	broad.mit.edu	37	chr6	110734386	110734386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaagaaaaaaacctGcatattacacttacacctat	4	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110734386	T	T	110734386	1	4	91	0	1	0	0	0	0	0	0	0	4367	1334	46	3		3	DDO	6	110734386	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	311107	110734386	60380681	407	92401											
WISP3	8838	broad.mit.edu	37	chr6	112382130	112382130	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctgtttgggggaaatcttCtattcctgttatactattac	7	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112382130	A	A	112382130	1	1	91	0	1	0	0	0	0	0	0	0	17501	928	32	3		3	WISP3	6	112382130	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1647744	112382130	58732937	408	92402											
LAMA4	3910	broad.mit.edu	37	chr6	112435411	112435411	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaataactgaaatgcaggGcaaagactggtcataagtgg	11	6	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112435411	A	A	112435411	1	1	91	0	1	0	0	0	0	0	0	0	8680	1218	42	4		4	LAMA4	6	112435411	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	53281	112435411	58679656	409	92403											
ROS1	6098	broad.mit.edu	37	chr6	117665433	117665435	+	Intron	DEL	AAG	-	-													agaaacgctttatctaaaatAagaagaaaccaaaagattaa							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117665435	-	-	117665433	6	5	91	0	1	1	0	1	0	0	0	0	13642	377	13	0		0	ROS1	6	117665433	Intron	DEL	AAG	TCGA-17-Z062-01A-01W-0747-08	5230022	117665433	53449634	410	92404											
LAMA2	3908	broad.mit.edu	37	chr6	129592005	129592005	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaataaataataaacaCagacatgaattttttcagga	5	4	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129592005	A	A	129592005	1	1	91	0	1	0	0	0	0	0	0	0	8678	493	17	3		3	LAMA2	6	129592005	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	11926572	129592005	41523062	411	92405											
AKAP7	9465	broad.mit.edu	37	chr6	131486289	131486289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgactggccaaagcaatGgtcagtgatggttcctttca	12	9	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131486289	T	T	131486289	3	4	91	1	0	0	0	0	1	0	0	0	456	1348	47	2	304	2	AKAP7	6	131486289	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1894284	131486289	39628778	412	92406											
SYNE1	23345	broad.mit.edu	37	chr6	152462490	152462490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagacataaacaaccggcccCtgtcacccaaatcttcatga	5	14	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152462490	T	T	152462490	1	4	91	0	1	0	0	0	0	0	0	0	15564	696	24	4		4	SYNE1	6	152462490	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	20976201	152462490	18652577	413	92407											
SYNE1	23345	broad.mit.edu	37	chr6	152464721	152464721	+	Intron	SNP	T	A	A													tttgacacagaactgtggttTcgcacaggtcggaatcagga							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152464721	A	A	152464721	1	1	91	0	1	0	0	0	0	0	0	0	15564	1798	62	5		5	SYNE1	6	152464721	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2231	152464721	18650346	414	92408	414	2									
SYNE1	23345	broad.mit.edu	37	chr6	152464724	152464724	+	Intron	SNP	C	A	A													gacacagaactgtggtttcgCacaggtcggaatcaggatgg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152464724	A	A	152464724	1	1	91	0	1	0	0	0	0	0	0	0	15564	725	25	3		3	SYNE1	6	152464724	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3	152464724	18650343	415	92409	414	2									
TCP1	6950	broad.mit.edu	37	chr6	160200623	160200623	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttttaatgcaacctgttcTgcagaggttaacaaagagcg	9	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160200623	C	C	160200623	1	2	91	0	1	0	0	0	0	0	0	0	15831	1595	55	5		5	TCP1	6	160200623	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	7735899	160200623	10914444	416	92410											
LPA	4018	broad.mit.edu	37	chr6	160999728	160999728	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattcctgcagtagttcctgGtcaggccactgcaaatttca	9	11	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160999728	C	C	160999728	3	2	91	1	0	0	0	0	1	0	0	0	8990	1261	44	4	1876	4	LPA	6	160999728	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	799105	160999728	10115339	417	92411											
PLG	5340	broad.mit.edu	37	chr6	161132127	161132127	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgtatctctcagagtgcaAgactgggaatggaaagaact	12	6	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161132127	T	T	161132127	3	4	91	1	0	0	0	0	1	0	0	0	12181	72	3	5	325	5	PLG	6	161132127	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	132399	161132127	9982940	418	92412											
PLG	5340	broad.mit.edu	37	chr6	161157957	161157957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaagcctcaagtggagCcgaagaaatgtcctggaagg	16	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161157957	A	A	161157957	3	1	91	1	0	0	0	0	1	0	0	0	12181	739	26	3	1778	3	PLG	6	161157957	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	25830	161157957	9957110	419	92413											
PARK2	5071	broad.mit.edu	37	chr6	161969900	161969900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaccccacagcccaggcCattgcccccttcgcaggtga	8	19	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161969900	A	A	161969900	3	1	91	1	0	0	0	0	1	0	0	0	11543	594	21	2	344	2	PARK2	6	161969900	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	811943	161969900	9145167	420	92414											
C6orf118	168090	broad.mit.edu	37	chr6	165715670	165715670	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggtggtctttctgaagCcgattcagaagtttcttcag	10	10	5	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165715670	A	A	165715670	2	1	91	1	0	0	0	0	0	0	0	1	2346	726	26	3		3	C6orf118	6	165715670	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3745770	165715670	5399397	421	92415											
GPR31	2853	broad.mit.edu	37	chr6	167570484	167570484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaagcagtataccacgGggttgagcacactgtgcagg	15	8	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167570484	T	T	167570484	3	4	91	1	0	0	0	0	1	0	0	0	6752	1232	43	2	126	2	GPR31	6	167570484	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1854814	167570484	3544583	422	92416											
MLLT4	4301	broad.mit.edu	37	chr6	168344614	168344614	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttacatgtgtaatcttcttCtcctagggcggcagaactca	8	11	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168344614	T	T	168344614	1	4	91	0	1	0	0	0	0	0	0	0	9722	928	32	4		4	MLLT4	6	168344614	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	774130	168344614	2770453	423	92417											
C6orf70	55780	broad.mit.edu	37	chr6	170156989	170156989	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccaagactaggaagagaaAgaggtttaattggacttacg	11	6	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170156989	T	T	170156989	1	4	91	0	1	0	0	0	0	0	0	0	2394	87	3	5		5	C6orf70	6	170156989	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1812375	170156989	958078	424	92418											
INTS1	26173	broad.mit.edu	37	chr7	1527608	1527608	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagttgctagggccagacggGggagcgtgtcaccctgcccc	15	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1527608	A	A	1527608	1	1	91	0	1	0	0	0	0	0	0	0	7845	1247	43	4		4	INTS1	7	1527608	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08		1527608	157611055	425	92419											
IQCE	23288	broad.mit.edu	37	chr7	2606810	2606810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagacggtgagtgccgctGggtgtcagccgtgcgacctc	17	11	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2606810	T	T	2606810	1	4	91	0	1	0	0	0	0	0	0	0	7876	1363	47	2		2	IQCE	7	2606810	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1079202	2606810	156531853	426	92420											
C7orf26	79034	broad.mit.edu	37	chr7	6631360	6631360	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accaaggactctgttcggcaGattattttttcatccctttt	6	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6631360	C	C	6631360	3	2	91	1	0	0	0	0	1	0	0	0	2406	933	33	4	282	4	C7orf26	7	6631360	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4024550	6631360	152507303	427	92421											
NDUFA4	4697	broad.mit.edu	37	chr7	10979714	10979714	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaggtctccgactggaaagGagagaaccgacctagccacc	12	12	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10979714	C	C	10979714	1	2	91	0	1	0	0	0	0	0	0	0	10361	1189	41	4		4	NDUFA4	7	10979714	5'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4348354	10979714	148158949	428	92422											
THSD7A	221981	broad.mit.edu	37	chr7	11486905	11486905	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaccacagtctccattgcAtgaagaaaacttggaccagc	8	12	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11486905	G	G	11486905	3	3	91	1	0	0	0	0	1	0	0	0	16002	217	8	5	2285	5	THSD7A	7	11486905	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	507191	11486905	147651758	429	92423											
THSD7A	221981	broad.mit.edu	37	chr7	11632988	11632988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactgcctgatggttcgtgtCcttacacgagtgcctgcagg	12	11	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11632988	A	A	11632988	3	1	91	1	0	0	0	0	1	0	0	0	16002	854	30	3	3909	3	THSD7A	7	11632988	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	146083	11632988	147505675	430	92424											
HDAC9	9734	broad.mit.edu	37	chr7	18914169	18914169	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtatctgctggatttgatgCattggaaggccacacccctc	10	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18914169	G	G	18914169	3	3	91	1	0	0	0	0	1	0	0	0	7081	710	25	4	2948	4	HDAC9	7	18914169	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7281181	18914169	140224494	431	92425											
ITGB8	3696	broad.mit.edu	37	chr7	20444439	20444439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcggccgcttctgtgaaCactgccccacctgttataca	8	15	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20444439	A	A	20444439	3	1	91	1	0	0	0	0	1	0	0	0	7971	478	17	3	1918	3	ITGB8	7	20444439	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1530270	20444439	138694224	432	92426											
DNAH11	8701	broad.mit.edu	37	chr7	21760498	21760498	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttagaaatagtttacagGaccagtttccagttttgtgt	9	5	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21760498	T	T	21760498	1	4	91	0	1	0	0	0	0	0	0	0	4639	1189	41	3		3	DNAH11	7	21760498	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1316059	21760498	137378165	433	92427											
FKBP9	11328	broad.mit.edu	37	chr7	33014284	33014285	+	Missense_Mutation	DNP	GG	TT	TT													gaaaaggacagctgatcacaGggatggaccaggctcttgtt					rs143841637		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	33014285	TT	TT	33014284	3	4	91	1	0	0	0	0	1	0	0	0	5972	1000	35	2	283	2	FKBP9	7	33014284	Missense_Mutation	DNP	GG	TCGA-17-Z062-01A-01W-0747-08	11253786	33014284	126124379	434	92428											
BBS9	27241	broad.mit.edu	37	chr7	33644806	33644806	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttactctctttttttccaGaagtttcacccctccaagga	4	13	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33644806	T	T	33644806	5	4	91	1	0	0	0	0	0	0	1	0	1347	956	33	3	2718	3	BBS9	7	33644806	Splice_Site	SNP	G	TCGA-17-Z062-01A-01W-0747-08	630522	33644806	125493857	435	92429											
AOAH	313	broad.mit.edu	37	chr7	36634038	36634038	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagattgatgaaagagttcTaaggaaaacaataaagtagc	10	3	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36634038	A	A	36634038	5	1	91	1	0	0	0	0	0	0	1	0	728	1536	53	5	1263	5	AOAH	7	36634038	Splice_Site	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2989232	36634038	122504625	436	92430											
AMPH	273	broad.mit.edu	37	chr7	38543384	38543384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagtgctaagtctcaaagTtactattgccagaagctcat	8	8	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38543384	C	C	38543384	1	2	91	0	1	0	0	0	0	0	0	0	588	1740	60	5		5	AMPH	7	38543384	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1909346	38543384	120595279	437	92431											
POU6F2	11281	broad.mit.edu	37	chr7	39472830	39472830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgggaaccagatcctgcCcgtgatcaacacccagggca	10	14	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39472830	A	A	39472830	3	1	91	1	0	0	0	0	1	0	0	0	12381	623	22	2	1207	2	POU6F2	7	39472830	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	929446	39472830	119665833	438	92432											
C7orf25	79020	broad.mit.edu	37	chr7	42949701	42949701	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctttgaaaataaagtggcAgcctccatagctgagggcag	11	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42949701	T	T	42949701	3	4	91	1	0	0	0	0	1	0	0	0	2405	188	7	5	470	5	C7orf25	7	42949701	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3476871	42949701	116188962	439	92433											
GCK	2645	broad.mit.edu	37	chr7	44187364	44187364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggtattgacgcacatgcGgccctcgtccccctccacca	8	19	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44187364	T	T	44187364	3	4	91	1	0	0	0	0	1	0	0	0	6355	1116	39	1	665	1	GCK	7	44187364	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1237663	44187364	114951299	440	92434											
RAMP3	10268	broad.mit.edu	37	chr7	45216911	45216911	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtcccctctccaggtgGgtgtcccagagcaggcggct	15	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45216911	A	A	45216911	3	1	91	1	0	0	0	0	1	0	0	0	13131	1232	43	4	68	4	RAMP3	7	45216911	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1029547	45216911	113921752	441	92435											
ADCY1	107	broad.mit.edu	37	chr7	45725877	45725877	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctactgaatctgtgtatacaGatatgcactacaggcttctg	8	9	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45725877	C	C	45725877	1	2	91	0	1	0	0	0	0	0	0	0	292	957	33	4		4	ADCY1	7	45725877	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	508966	45725877	113412786	442	92436											
VSTM2A	222008	broad.mit.edu	37	chr7	54621671	54621671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccttcccaccttcccaaCgtcacacagaactgtgaagc	5	19	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54621671	A	A	54621671	1	1	91	0	1	0	0	0	0	0	0	0	17356	551	19	3		3	VSTM2A	7	54621671	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8895794	54621671	104516992	443	92437											
EGFR	1956	broad.mit.edu	37	chr7	55269312	55269312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaaactaacgattaagaCaaaaattaaacaccttcaca	2	9	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55269312	A	A	55269312	1	1	91	0	1	0	0	0	0	0	0	0	5007	493	17	3		3	EGFR	7	55269312	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	647641	55269312	103869351	444	92438											
SEPT14	346288	broad.mit.edu	37	chr7	55863581	55863581	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgatgtagaatgataggGctctcagaatagtaagagaa	12	4	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55863581	T	T	55863581	1	4	91	0	1	0	0	0	0	0	0	0	14176	1218	42	3		3	SEPT14	7	55863581	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	594269	55863581	103275082	445	92439											
CCT6A	908	broad.mit.edu	37	chr7	56123401	56123402	+	Frame_Shift_Del	DEL	AG	-	-													tggaagaagtcaaagtaagcAgagagatggacagggaaaca							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56123402	-	-	56123401	7	5	91	1	0	1	0	1	0	0	0	0	2987	180	7	0	435	0	CCT6A	7	56123401	Frame_Shift_Del	DEL	AG	TCGA-17-Z062-01A-01W-0747-08	259820	56123401	103015262	446	92440											
ZNF735	730291	broad.mit.edu	37	chr7	63679647	63679647	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttgtacagtatatttatCtgagtctagtaagtggagta	10	3	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63679647	G	G	63679647	1	3	91	0	1	0	0	0	0	0	0	0	18253	928	32	4		4	ZNF735	7	63679647	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7556246	63679647	95459016	447	92441											
BAZ1B	9031	broad.mit.edu	37	chr7	72883886	72883886	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaccagagactgtgtggtCtttgcagtgatggttgaatc	12	7	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72883886	A	A	72883886	3	1	91	1	0	0	0	0	1	0	0	0	1335	913	32	3	1668	3	BAZ1B	7	72883886	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	9204239	72883886	86254777	448	92442											
CLIP2	7461	broad.mit.edu	37	chr7	73795247	73795247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgggaagaggctggctgGctctgccttcctgctgggtc	15	12	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73795247	T	T	73795247	1	4	91	0	1	0	0	0	0	0	0	0	3565	1218	42	3		3	CLIP2	7	73795247	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	911361	73795247	85343416	449	92443											
ZP3	7784	broad.mit.edu	37	chr7	76063027	76063027	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaccctaaagccacctgttTggctttttgagacagtgtca	9	10	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76063027	C	C	76063027	1	2	91	0	1	0	0	0	0	0	0	0	18346	1827	63	5		5	ZP3	7	76063027	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2267780	76063027	83075636	450	92444											
GRM3	2913	broad.mit.edu	37	chr7	86416287	86416287	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtccaagatcatgtttgtGgtgaacgcggtgtatgccat	13	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86416287	T	T	86416287	2	4	91	1	0	0	0	0	0	0	0	1	6864	1335	47	2		2	GRM3	7	86416287	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	10353260	86416287	72722376	451	92445											
ABCB4	5244	broad.mit.edu	37	chr7	87082248	87082248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgaaagtgtgacattaaCaatgtacctactctgttagc	7	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87082248	A	A	87082248	1	1	91	0	1	0	0	0	0	0	0	0	43	493	17	3		3	ABCB4	7	87082248	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	665961	87082248	72056415	452	92446											
ABCB1	5243	broad.mit.edu	37	chr7	87229398	87229398	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattactcaaatctcgcaaCtatgtaaactatgaaaatga	4	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87229398	T	T	87229398	1	4	91	0	1	0	0	0	0	0	0	0	40	580	20	4		4	ABCB1	7	87229398	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	147150	87229398	71909265	453	92447											
GTPBP10	85865	broad.mit.edu	37	chr7	90014232	90014232	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatttatttgaaaaaaacAtgattccagagaggactgta	8	5	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90014232	C	C	90014232	3	2	91	1	0	0	0	0	1	0	0	0	6944	217	8	5	966	5	GTPBP10	7	90014232	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2784834	90014232	69124431	454	92448											
SAMD9	54809	broad.mit.edu	37	chr7	92735270	92735270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgttctttttttaaccaCttcaagactgctccattcac	4	11	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92735270	A	A	92735270	3	1	91	1	0	0	0	0	1	0	0	0	13937	564	20	3	4632	3	SAMD9	7	92735270	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2721038	92735270	66403393	455	92449											
CALCR	799	broad.mit.edu	37	chr7	93065453	93065453	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attttggtcacaagcacccgGacaatgttgagcaaaaagaa	9	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93065453	A	A	93065453	2	1	91	1	0	0	0	0	0	0	0	1	2605	1161	41	4		4	CALCR	7	93065453	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	330183	93065453	66073210	456	92450											
CASD1	64921	broad.mit.edu	37	chr7	94166868	94166868	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacctcggcctcctgttActctcatacagaagctagct	7	14	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94166868	G	G	94166868	3	3	91	1	0	0	0	0	1	0	0	0	2690	391	14	5	962	5	CASD1	7	94166868	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1101415	94166868	64971795	457	92451											
DYNC1I1	1780	broad.mit.edu	37	chr7	95625227	95625227	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccttgtgttgtcatcttaGcataattcatccttgtgacc	6	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95625227	C	C	95625227	1	2	91	0	1	0	0	0	0	0	0	0	4882	986	34	4		4	DYNC1I1	7	95625227	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1458359	95625227	63513436	458	92452											
DLX5	1749	broad.mit.edu	37	chr7	96650002	96650002	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgattttctagaacagCaaaacacagtagtcccaaaa	5	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96650002	A	A	96650002	1	1	91	0	1	0	0	0	0	0	0	0	4614	725	25	3		3	DLX5	7	96650002	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1024775	96650002	62488661	459	92453											
STAG3	10734	broad.mit.edu	37	chr7	99786548	99786548	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccagtacagcctcctctaTgatggcttccctatggacga	9	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99786548	C	C	99786548	2	2	91	1	0	0	0	0	0	0	0	1	15362	1471	51	5		5	STAG3	7	99786548	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	3136546	99786548	59352115	460	92454											
PILRA	29992	broad.mit.edu	37	chr7	99971201	99971201	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcactcacctcaaccccCaggcggcccctccacagggc	7	22	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99971201	A	A	99971201	1	1	91	0	1	0	0	0	0	0	0	0	12020	609	21	2		2	PILRA	7	99971201	5'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	184653	99971201	59167462	461	92455											
ACTL6B	51412	broad.mit.edu	37	chr7	100244538	100244538	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagcctcccccacgccCcaggatccagggactgcagc	9	20	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100244538	G	G	100244538	1	3	91	0	1	0	0	0	0	0	0	0	199	638	22	4		4	ACTL6B	7	100244538	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	273337	100244538	58894125	462	92456											
ZAN	7455	broad.mit.edu	37	chr7	100344252	100344252	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcctgtcctctggctgtctGagcttttccttccactacat	7	14	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100344252	A	A	100344252	2	1	91	1	0	0	0	0	0	0	0	1	17640	1277	45	4		4	ZAN	7	100344252	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	99714	100344252	58794411	463	92457											
ZAN	7455	broad.mit.edu	37	chr7	100388667	100388668	+	Nonsense_Mutation	DNP	CC	AT	AT													ctgcccagtggcgccctgacCcagaacctcaacacctttgg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	100388668	AT	AT	100388667	4	1	91	1	0	0	0	0	0	1	0	0	17640	610	22	2	7614	2	ZAN	7	100388667	Nonsense_Mutation	DNP	CC	TCGA-17-Z062-01A-01W-0747-08	44415	100388667	58749996	464	92458											
SLC12A9	56996	broad.mit.edu	37	chr7	100451908	100451908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatggggccgggggtcctgGaggggcgtctgcccggaagc	20	11	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100451908	T	T	100451908	3	4	91	1	0	0	0	0	1	0	0	0	14503	1174	41	3	91	3	SLC12A9	7	100451908	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	63241	100451908	58686755	465	92459											
SERPINE1	5054	broad.mit.edu	37	chr7	100771538	100771538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgtcatggtctcttcctGcaccttgccctagtgttcac	7	14	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100771538	T	T	100771538	1	4	91	0	1	0	0	0	0	0	0	0	14224	1334	46	3		3	SERPINE1	7	100771538	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	319630	100771538	58367125	466	92460											
PLOD3	8985	broad.mit.edu	37	chr7	100855511	100855511	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagcctcatcccaccctctCctccccgcaagcacccgctc	4	24	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100855511	A	A	100855511	1	1	91	0	1	0	0	0	0	0	0	0	12198	870	30	3		3	PLOD3	7	100855511	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	83973	100855511	58283152	467	92461											
EMID2	136227	broad.mit.edu	37	chr7	101045058	101045058	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggagggagaagaggaGgaggaggaggaagaccctgg	23	3	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101045058	C	C	101045058	1	2	91	0	1	0	0	0	0	0	0	0	5134	1015	35	4		4	EMID2	7	101045058	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	189547	101045058	58093605	468	92462											
MYL10	93408	broad.mit.edu	37	chr7	101266302	101266302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcaaaggtgtccctcaaGtcctctttgtcgatgaagcc	11	12	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101266302	T	T	101266302	3	4	91	1	0	0	0	0	1	0	0	0	10138	1020	36	3	376	3	MYL10	7	101266302	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	221244	101266302	57872361	469	92463											
ALKBH4	54784	broad.mit.edu	37	chr7	102100280	102100280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaagtccacaggctgggCaacacagcgagacccggtcc	11	15	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102100280	A	A	102100280	1	1	91	0	1	0	0	0	0	0	0	0	529	725	25	3		3	ALKBH4	7	102100280	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	833978	102100280	57038383	470	92464											
RELN	5649	broad.mit.edu	37	chr7	103252100	103252100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccgtggttggttgagtaCtccagcttcacctggttgtc	13	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103252100	A	A	103252100	3	1	91	1	0	0	0	0	1	0	0	0	13328	564	20	3	7709	3	RELN	7	103252100	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1151820	103252100	55886563	471	92465											
RELN	5649	broad.mit.edu	37	chr7	103338523	103338523	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggatatggatgattgtgCtgacattggaaggggctctg	16	4	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103338523	T	T	103338523	3	4	91	1	0	0	0	0	1	0	0	0	13328	797	28	4	9686	4	RELN	7	103338523	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	86423	103338523	55800140	472	92466											
PIK3CG	5294	broad.mit.edu	37	chr7	106515241	106515241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggactgaaagcaggagCgctggcagtaggtatcactt	13	9	1	1	rs143259740	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106515241	A	A	106515241	3	1	91	1	0	0	0	0	1	0	0	0	12011	768	27	3	2398	3	PIK3CG	7	106515241	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3176718	106515241	52623422	473	92467											
CTTNBP2	83992	broad.mit.edu	37	chr7	117431240	117431240	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaggatgaggcactaacGgggtttatggaagagcaaaa	13	6	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117431240	A	A	117431240	2	1	91	1	0	0	0	0	0	0	0	1	4079	1103	39	4		4	CTTNBP2	7	117431240	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	10915999	117431240	41707423	474	92468											
KCND2	3751	broad.mit.edu	37	chr7	120373154	120373154	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgcaaccatggtttagcActtcccactttttataatga	6	11	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120373154	C	C	120373154	1	2	91	0	1	0	0	0	0	0	0	0	8089	174	6	5		5	KCND2	7	120373154	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2941914	120373154	38765509	475	92469											
PTPRZ1	5803	broad.mit.edu	37	chr7	121637945	121637945	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcttttagggtgctattctCaataatttgctacccaatat	5	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121637945	A	A	121637945	2	1	91	1	0	0	0	0	0	0	0	1	12922	813	29	3		3	PTPRZ1	7	121637945	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1264791	121637945	37500718	476	92470											
SPAM1	6677	broad.mit.edu	37	chr7	123593822	123593822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttggaaaatttgatgaGccactagatatgagcctctt	9	7	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123593822	T	T	123593822	3	4	91	1	0	0	0	0	1	0	0	0	15102	962	34	3	200	3	SPAM1	7	123593822	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1955877	123593822	35544841	477	92471											
GRM8	2918	broad.mit.edu	37	chr7	126079199	126079199	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgattgctgtaactgaTatatgttgtcttggtagagg	12	3	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126079199	C	C	126079199	3	2	91	1	0	0	0	0	1	0	0	0	6869	1406	49	5	29	5	GRM8	7	126079199	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2485377	126079199	33059464	478	92472											
ARF5	381	broad.mit.edu	37	chr7	127230237	127230237	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagccctcagcttggggacaGagtgatctctgtagtggtat	14	8	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127230237	T	T	127230237	1	4	91	0	1	0	0	0	0	0	0	0	849	957	33	3		3	ARF5	7	127230237	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1151038	127230237	31908426	479	92473											
FLNC	2318	broad.mit.edu	37	chr7	128493723	128493723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagacagggaggccaggaGgctggggctctgaggttcct	19	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128493723	T	T	128493723	1	4	91	0	1	0	0	0	0	0	0	0	5993	1015	35	2		2	FLNC	7	128493723	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1263486	128493723	30644940	480	92474											
AKR1B1	231	broad.mit.edu	37	chr7	134127462	134127462	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtataggtcacttggggacGagcaggcaaccacagcttca	13	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134127462	A	A	134127462	1	1	91	0	1	0	0	0	0	0	0	0	466	1073	37	4		4	AKR1B1	7	134127462	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5633739	134127462	25011201	481	92475											
AKR1B15	441282	broad.mit.edu	37	chr7	134260353	134260353	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacttcttaaacattgcgGggggaatgttcaatgctatg	10	6	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134260353	T	T	134260353	1	4	91	0	1	0	0	0	0	0	0	0	468	1247	43	2		2	AKR1B15	7	134260353	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	132891	134260353	24878310	482	92476											
STRA8	346673	broad.mit.edu	37	chr7	134936486	134936486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcatctctccccagcagcCcagggcaagcatgaaattgt	8	14	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134936486	A	A	134936486	1	1	91	0	1	0	0	0	0	0	0	0	15441	638	22	2		2	STRA8	7	134936486	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	676133	134936486	24202177	483	92477											
CHRM2	1129	broad.mit.edu	37	chr7	136700830	136700830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccccatacaatgtcatGgtgctcattaacaccttttg	8	11	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700830	T	T	136700830	3	4	91	1	0	0	0	0	1	0	0	0	3408	1348	47	2	1220	2	CHRM2	7	136700830	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1764344	136700830	22437833	484	92478											
PTN	5764	broad.mit.edu	37	chr7	136939605	136939605	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcagaaccctactgcttaCctggtttctctttcttccct	4	15	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136939605	T	T	136939605	5	4	91	1	0	0	0	0	0	0	1	0	12874	521	18	4	406	4	PTN	7	136939605	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	238775	136939605	22199058	485	92479											
AKR1D1	6718	broad.mit.edu	37	chr7	137782631	137782631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggagatgaaatataccCtagagatgagaatggcaaat	11	6	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137782631	A	A	137782631	3	1	91	1	0	0	0	0	1	0	0	0	473	681	24	2	412	2	AKR1D1	7	137782631	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	843026	137782631	21356032	486	92480											
KIAA1549	57670	broad.mit.edu	37	chr7	138601460	138601460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccttagaaagattgccCaccccagagaggcggcagga	12	12	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138601460	A	A	138601460	1	1	91	0	1	0	0	0	0	0	0	0	8314	609	21	2		2	KIAA1549	7	138601460	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	818829	138601460	20537203	487	92481											
EPHB6	2051	broad.mit.edu	37	chr7	142563859	142563859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgaaggccgccaggaacCtgccagcggtggtgggggca	19	10	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142563859	A	A	142563859	3	1	91	1	0	0	0	0	1	0	0	0	5220	681	24	2	1265	2	EPHB6	7	142563859	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3962399	142563859	16574804	488	92482											
TRPV5	56302	broad.mit.edu	37	chr7	142612069	142612069	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accttctggatcatgatggtGaagggacccagcatctggaa	12	9	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142612069	T	T	142612069	3	4	91	1	0	0	0	0	1	0	0	0	16724	1281	45	3	775	3	TRPV5	7	142612069	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	48210	142612069	16526594	489	92483											
KEL	3792	broad.mit.edu	37	chr7	142643203	142643203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattccccaatcacacacaCcactgagaaagtcaaagtta	4	13	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142643203	A	A	142643203	1	1	91	0	1	0	0	0	0	0	0	0	8212	522	18	3		3	KEL	7	142643203	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	31134	142643203	16495460	490	92484											
CASP2	835	broad.mit.edu	37	chr7	142991495	142991495	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaacctgaacttagtttgcAtgtacatttcctttctgcct	7	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142991495	T	T	142991495	1	4	91	0	1	0	0	0	0	0	0	0	2697	232	8	5		5	CASP2	7	142991495	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	348292	142991495	16147168	491	92485											
FAM115A	9747	broad.mit.edu	37	chr7	143573604	143573604	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcacaggaaatgaagcctctCcaataagaagcagttcacat	7	10	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143573604	G	G	143573604	3	3	91	1	0	0	0	0	1	0	0	0	5451	855	30	4	2699	4	FAM115A	7	143573604	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	582109	143573604	15565059	492	92486											
TPK1	27010	broad.mit.edu	37	chr7	144462959	144462959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaaagaaacagaaatgCtaattaaggttacctttgtt	7	5	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144462959	A	A	144462959	1	1	91	0	1	0	0	0	0	0	0	0	16528	812	28	3		3	TPK1	7	144462959	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	889355	144462959	14675704	493	92487											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092682	147092682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaccagatttacattccCatttcttctgtttcacaggt	5	11	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147092682	A	A	147092682	1	1	91	0	1	0	0	0	0	0	0	0	3679	609	21	2		2	CNTNAP2	7	147092682	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2629723	147092682	12045981	494	92488											
GIMAP8	155038	broad.mit.edu	37	chr7	150174229	150174229	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgggactgggaagagtgcGaccgggaactctatcctggg	17	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150174229	T	T	150174229	2	4	91	1	0	0	0	0	0	0	0	1	6449	1045	37	3		3	GIMAP8	7	150174229	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3081547	150174229	8964434	495	92489											
TMEM176A	55365	broad.mit.edu	37	chr7	150498728	150498728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaggagtctgccctggcCaagctcctgctcacctgctg	10	17	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150498728	A	A	150498728	2	1	91	1	0	0	0	0	0	0	0	1	16215	581	21	2		2	TMEM176A	7	150498728	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	324499	150498728	8639935	496	92490											
ATG9B	285973	broad.mit.edu	37	chr7	150720217	150720217	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtctggtatggttacttgGttggttggcaaagagaacat	14	4	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150720217	C	C	150720217	3	2	91	1	0	0	0	0	1	0	0	0	1107	1261	44	4	2077	4	ATG9B	7	150720217	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	221489	150720217	8418446	497	92491											
DPP6	1804	broad.mit.edu	37	chr7	154645512	154645512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgttcctatggtgacGgtgcacaacacaacagataa	10	10	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154645512	T	T	154645512	2	4	91	1	0	0	0	0	0	0	0	1	4770	1103	39	1		1	DPP6	7	154645512	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3925295	154645512	4493151	498	92492											
PTPRN2	5799	broad.mit.edu	37	chr7	157691527	157691527	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattgaaaatttcaattacAtgactgcttgacccgcctac	5	12	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157691527	C	C	157691527	1	2	91	0	1	0	0	0	0	0	0	0	12916	232	8	5		5	PTPRN2	7	157691527	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3046015	157691527	1447136	499	92493											
PTPRN2	5799	broad.mit.edu	37	chr7	158007135	158007135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacaactaaagcagCctctctctaatcaaggagtc	5	14	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158007135	A	A	158007135	1	1	91	0	1	0	0	0	0	0	0	0	12916	754	26	3		3	PTPRN2	7	158007135	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	315608	158007135	1131528	500	92494											
PTPRN2	5799	broad.mit.edu	37	chr7	158325541	158325541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatggcagagagaatgtggCccgtgctgcactctgacgcg	14	11	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325541	A	A	158325541	1	1	91	0	1	0	0	0	0	0	0	0	12916	754	26	3		3	PTPRN2	7	158325541	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	318406	158325541	813122	501	92495											
DLGAP2	9228	broad.mit.edu	37	chr8	1497609	1497609	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccactgctaccccgacgcGctgcagagccccttcgggga	12	18	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1497609	T	T	1497609	2	4	91	1	0	0	0	0	0	0	0	1	4600	1074	38	3		3	DLGAP2	8	1497609	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08		1497609	144866413	502	92496											
RP1L1	94137	broad.mit.edu	37	chr8	10467521	10467521	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgcagcccttctcctcCtgtttcttcaatttcctcta	3	15	5	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467521	T	T	10467521	3	4	91	1	0	0	0	0	1	0	0	0	13644	690	24	4	3119	4	RP1L1	8	10467521	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8969912	10467521	135896501	503	92497											
MSR1	4481	broad.mit.edu	37	chr8	15967555	15967555	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggtaataaaatcatttttGagcagcgatttcatagttgt	8	4	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15967555	T	T	15967555	1	4	91	0	1	0	0	0	0	0	0	0	9980	1305	45	3		3	MSR1	8	15967555	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5500034	15967555	130396467	504	92498											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19276199	19276199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggagggactgcatcatGgtggccgtatattatgccag	14	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19276199	T	T	19276199	3	4	91	1	0	0	0	0	1	0	0	0	3972	1348	47	2	415	2	CSGALNACT1	8	19276199	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3308644	19276199	127087823	505	92499											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19278006	19278006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccattcagctggatgaagGtaaagttcctgaagttggca	11	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19278006	T	T	19278006	3	4	91	1	0	0	0	0	1	0	0	0	3972	1261	44	3	637	3	CSGALNACT1	8	19278006	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1807	19278006	127086016	506	92500											
DOCK5	80005	broad.mit.edu	37	chr8	25203308	25203309	+	Intron	DNP	TG	CT	CT													gtgcaaagtcagattactgcTggggccttctgcaggctgat							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	25203309	CT	CT	25203308	1	2	91	0	1	0	0	0	0	0	0	0	4730	1595	55	5		5	DOCK5	8	25203308	Intron	DNP	TG	TCGA-17-Z062-01A-01W-0747-08	5925302	25203308	121160714	507	92501											
EBF2	64641	broad.mit.edu	37	chr8	25718935	25718935	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgtcaaaggcaaaatccaAgatggcaaacaaaagaaaat	7	6	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25718935	T	T	25718935	1	4	91	0	1	0	0	0	0	0	0	0	4921	87	3	5		5	EBF2	8	25718935	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	515627	25718935	120645087	508	92502											
EPHX2	2053	broad.mit.edu	37	chr8	27402090	27402090	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatccttccacctgctgGggcaccattcttagtataca	7	14	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27402090	T	T	27402090	1	4	91	0	1	0	0	0	0	0	0	0	5222	1247	43	2		2	EPHX2	8	27402090	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1683155	27402090	118961932	509	92503											
KIF13B	23303	broad.mit.edu	37	chr8	28988082	28988082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagattcctcctgttgggaCatcctttgcagaaatcactt	8	10	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28988082	A	A	28988082	3	1	91	1	0	0	0	0	1	0	0	0	8345	478	17	3	2505	3	KIF13B	8	28988082	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1585992	28988082	117375940	510	92504											
RBPMS	11030	broad.mit.edu	37	chr8	30332327	30332327	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcagtggccttcctctGgatatcaaacctcgggagct	10	11	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30332327	T	T	30332327	2	4	91	1	0	0	0	0	0	0	0	1	13271	1335	47	2		2	RBPMS	8	30332327	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1344245	30332327	116031695	511	92505											
GSR	2936	broad.mit.edu	37	chr8	30538312	30538312	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagtgggcctgtccagtTgaatcagaaggctcaactgc	11	10	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30538312	A	A	30538312	1	1	91	0	1	0	0	0	0	0	0	0	6894	1827	63	5		5	GSR	8	30538312	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	205985	30538312	115825710	512	92506											
NRG1	3084	broad.mit.edu	37	chr8	32463282	32463282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagactcataatagactgGtgtgttaaatctcattgtga	9	5	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32463282	T	T	32463282	1	4	91	0	1	0	0	0	0	0	0	0	10742	1276	44	3		3	NRG1	8	32463282	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1924970	32463282	113900740	513	92507											
NRG1	3084	broad.mit.edu	37	chr8	32599526	32599526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacatttttgccctctagGtgccaacctggattcactgg	8	13	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32599526	T	T	32599526	3	4	91	1	0	0	0	0	1	0	0	0	10742	1275	44	3	2129	3	NRG1	8	32599526	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	136244	32599526	113764496	514	92508											
POTEA	340441	broad.mit.edu	37	chr8	43147866	43147866	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggtggggtgaagtccccaGagcggatctcatcgtcatgc	14	11	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43147866	T	T	43147866	3	4	91	1	0	0	0	0	1	0	0	0	12356	942	33	3	241	3	POTEA	8	43147866	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	10548340	43147866	103216156	515	92509											
XKR4	114786	broad.mit.edu	37	chr8	56364751	56364751	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcactgtcagaccccaCctcctcatcaaaggccattt	6	17	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56364751	G	G	56364751	1	3	91	0	1	0	0	0	0	0	0	0	17560	522	18	4		4	XKR4	8	56364751	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	13216885	56364751	89999271	516	92510											
CPA6	57094	broad.mit.edu	37	chr8	68396116	68396116	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacataattaagaaaacagGtgctgagaaaaatacttaaa	7	4	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68396116	A	A	68396116	1	1	91	0	1	0	0	0	0	0	0	0	3826	1276	44	4		4	CPA6	8	68396116	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	12031365	68396116	77967906	517	92511											
CPA6	57094	broad.mit.edu	37	chr8	68430323	68430323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataattcatatccaacgtaGggggggaaaatctgtgtcac	10	7	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68430323	T	T	68430323	1	4	91	0	1	0	0	0	0	0	0	0	3826	1015	35	2		2	CPA6	8	68430323	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	34207	68430323	77933699	518	92512											
PREX2	80243	broad.mit.edu	37	chr8	69009216	69009216	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggagattaacaaatccttCatgaatttactgagttacag	8	6	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69009216	A	A	69009216	1	1	91	0	1	0	0	0	0	0	0	0	12583	841	29	3		3	PREX2	8	69009216	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	578893	69009216	77354806	519	92513											
JPH1	56704	broad.mit.edu	37	chr8	75156958	75156958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaagactggctggatccatCgccgtcctccacgtctactg	11	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75156958	A	A	75156958	3	1	91	1	0	0	0	0	1	0	0	0	8030	884	31	3	282	3	JPH1	8	75156958	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6147742	75156958	71207064	520	92514											
ZFHX4	79776	broad.mit.edu	37	chr8	77690615	77690615	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaccagcaaggcctggcaCcagaggaggacaacctcagt	11	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77690615	G	G	77690615	3	3	91	1	0	0	0	0	1	0	0	0	17761	507	18	4	3275	4	ZFHX4	8	77690615	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2533657	77690615	68673407	521	92515											
RALYL	138046	broad.mit.edu	37	chr8	85774492	85774492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgatagaactctcgggCatcaaaccaactctcagtcc	6	12	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85774492	A	A	85774492	1	1	91	0	1	0	0	0	0	0	0	0	13128	725	25	3		3	RALYL	8	85774492	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8083877	85774492	60589530	522	92516											
PSKH2	85481	broad.mit.edu	37	chr8	87060802	87060802	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactgtgcagatccaggactCtgagagtggggagaggccct	16	9	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87060802	A	A	87060802	3	1	91	1	0	0	0	0	1	0	0	0	12771	912	32	3	112	3	PSKH2	8	87060802	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1286310	87060802	59303220	523	92517											
SLC26A7	115111	broad.mit.edu	37	chr8	92307886	92307886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccgactttgaaatgcaaagGatccacgttgctgcagcagt	10	10	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92307886	T	T	92307886	3	4	91	1	0	0	0	0	1	0	0	0	14636	1165	41	3	442	3	SLC26A7	8	92307886	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5247084	92307886	54056136	524	92518											
RUNX1T1	862	broad.mit.edu	37	chr8	93026929	93026929	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctggcaccacaggctgGgggcagctgttgattagcca	14	11	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93026929	A	A	93026929	3	1	91	1	0	0	0	0	1	0	0	0	13858	1232	43	4	1504	4	RUNX1T1	8	93026929	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	719043	93026929	53337093	525	92519											
RPL30	6156	broad.mit.edu	37	chr8	99054972	99054972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatggacaccagttttagCcaacatagcatagtactcta	8	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99054972	A	A	99054972	3	1	91	1	0	0	0	0	1	0	0	0	13691	739	26	3	156	3	RPL30	8	99054972	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6028043	99054972	47309050	526	92520											
RIMS2	9699	broad.mit.edu	37	chr8	104898361	104898361	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaatgcgccagatttcgTtgagcagttcagaggaggaa	13	6	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104898361	C	C	104898361	2	2	91	1	0	0	0	0	0	0	0	1	13479	1722	60	5		5	RIMS2	8	104898361	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	5843389	104898361	41465661	527	92521											
RIMS2	9699	broad.mit.edu	37	chr8	105105650	105105650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagctaataattgctttGtgtggtaatactgacaactt	8	5	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105105650	T	T	105105650	1	4	91	0	1	0	0	0	0	0	0	0	13479	1392	48	3		3	RIMS2	8	105105650	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	207289	105105650	41258372	528	92522											
DPYS	1807	broad.mit.edu	37	chr8	105393278	105393278	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttctgctttgatcaatcttCccttggctcaattgtccttg	7	11	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105393278	T	T	105393278	1	4	91	0	1	0	0	0	0	0	0	0	4786	870	30	4		4	DPYS	8	105393278	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	287628	105393278	40970744	529	92523											
LRP12	29967	broad.mit.edu	37	chr8	105510247	105510247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccaggcttctggtataCactttccattaccacaacga	5	12	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105510247	A	A	105510247	3	1	91	1	0	0	0	0	1	0	0	0	9041	478	17	3	2058	3	LRP12	8	105510247	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	116969	105510247	40853775	530	92524											
RSPO2	340419	broad.mit.edu	37	chr8	108995804	108995804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagtgagccagcagagcCatgtattggaagtaaagccc	12	8	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108995804	A	A	108995804	1	1	91	0	1	0	0	0	0	0	0	0	13821	609	21	2		2	RSPO2	8	108995804	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3485557	108995804	37368218	531	92525											
CSMD3	114788	broad.mit.edu	37	chr8	113267669	113267670	+	Intron	DEL	AG	-	-													aaactttgctggaaatgaaaAgaaagacgcttatatcaaag							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113267670	-	-	113267669	6	5	91	0	1	1	0	1	0	0	0	0	3980	87	3	0		0	CSMD3	8	113267669	Intron	DEL	AG	TCGA-17-Z062-01A-01W-0747-08	4271865	113267669	33096353	532	92526											
CSMD3	114788	broad.mit.edu	37	chr8	114449153	114449153	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgttgttggtgcgcGgtcacagctcggagtgaatg	16	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114449153	T	T	114449153	1	4	91	0	1	0	0	0	0	0	0	0	3980	1131	39	1		1	CSMD3	8	114449153	5'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1181484	114449153	31914869	533	92527											
TRPS1	7227	broad.mit.edu	37	chr8	116617216	116617216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccaatgccaatgaatgttCcacctgaagtcacctggaga	9	11	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116617216	A	A	116617216	3	1	91	1	0	0	0	0	1	0	0	0	16718	855	30	3	2920	3	TRPS1	8	116617216	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2168063	116617216	29746806	534	92528											
TRPS1	7227	broad.mit.edu	37	chr8	116631936	116631936	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcacagactcccccagcaGctggagatgagaaagccaac	10	14	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116631936	C	C	116631936	3	2	91	1	0	0	0	0	1	0	0	0	16718	971	34	4	3515	4	TRPS1	8	116631936	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	14720	116631936	29732086	535	92529											
TAF2	6873	broad.mit.edu	37	chr8	120772822	120772822	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaaaatgatatgagcacgTatttctaaagtattaccttt	5	6	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120772822	C	C	120772822	1	2	91	0	1	0	0	0	0	0	0	0	15643	1653	57	5		5	TAF2	8	120772822	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	4140886	120772822	25591200	536	92530											
COL14A1	7373	broad.mit.edu	37	chr8	121309761	121309761	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatcatagttccagttacaGatgtttgatattgtttgctc	7	6	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121309761	C	C	121309761	3	2	91	1	0	0	0	0	1	0	0	0	3703	933	33	4	4382	4	COL14A1	8	121309761	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	536939	121309761	25054261	537	92531											
FER1L6	654463	broad.mit.edu	37	chr8	124987322	124987323	+	Intron	DNP	GG	TT	TT													cctgggaggccttggcgtgtGggagagaaaggggtggggct							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	124987323	TT	TT	124987322	1	4	91	0	1	0	0	0	0	0	0	0	5872	1363	47	2		2	FER1L6	8	124987322	Intron	DNP	GG	TCGA-17-Z062-01A-01W-0747-08	3677561	124987322	21376700	538	92532											
FER1L6	654463	broad.mit.edu	37	chr8	125072957	125072957	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgctttcgaagtggtgcgaGcttctcactctcccgacctg	10	14	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125072957	A	A	125072957	1	1	91	0	1	0	0	0	0	0	0	0	5872	986	34	4		4	FER1L6	8	125072957	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	85635	125072957	21291065	539	92533											
FER1L6	654463	broad.mit.edu	37	chr8	125078560	125078560	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccagtggatacctctgTgtgttttccagtggacacct	9	10	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125078560	C	C	125078560	1	2	91	0	1	0	0	0	0	0	0	0	5872	1711	59	5		5	FER1L6	8	125078560	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	5603	125078560	21285462	540	92534											
ASAP1	50807	broad.mit.edu	37	chr8	131414295	131414295	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acattgtctcagaccaagatCggatttcatatggaggctgc	10	9	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131414295	A	A	131414295	1	1	91	0	1	0	0	0	0	0	0	0	1014	899	31	3		3	ASAP1	8	131414295	5'Flank	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6335735	131414295	14949727	541	92535											
TG	7038	broad.mit.edu	37	chr8	133953640	133953640	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaacgctttgaacccactGgtttccaaaacatgctttct	6	11	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133953640	A	A	133953640	3	1	91	1	0	0	0	0	1	0	0	0	15936	1348	47	4	5188	4	TG	8	133953640	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2539345	133953640	12410382	542	92536											
ZFAT	57623	broad.mit.edu	37	chr8	135612705	135612705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgaactttaagatgtgCctgtagcttatatttatctg	9	5	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135612705	A	A	135612705	3	1	91	1	0	0	0	0	1	0	0	0	17758	739	26	3	1322	3	ZFAT	8	135612705	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1659065	135612705	10751317	543	92537											
COL22A1	169044	broad.mit.edu	37	chr8	139707074	139707074	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacaagagactcaccggttCcccaggcaggcctggatcgc	11	15	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139707074	A	A	139707074	4	1	91	1	0	0	0	0	0	1	0	0	3713	864	30	3	2371	3	COL22A1	8	139707074	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4094369	139707074	6656948	544	92538											
COL22A1	169044	broad.mit.edu	37	chr8	139774713	139774713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggcctcgctctccctgGcaaaagaaggcaaatggtga	11	12	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139774713	T	T	139774713	1	4	91	0	1	0	0	0	0	0	0	0	3713	1218	42	3		3	COL22A1	8	139774713	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	67639	139774713	6589309	545	92539											
VLDLR	7436	broad.mit.edu	37	chr9	2652803	2652803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttagtgatggcagcagtaGgtggctacttgatgtggcgg	16	6	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2652803	T	T	2652803	3	4	91	1	0	0	0	0	1	0	0	0	17301	1000	35	2	2510	2	VLDLR	9	2652803	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08		2652803	138560628	546	92540											
PTPRD	5789	broad.mit.edu	37	chr9	8465336	8465336	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcaaagagtaggcagcctGttattacacttaataacagt	8	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8465336	C	C	8465336	1	2	91	0	1	0	0	0	0	0	0	0	12907	1392	48	4		4	PTPRD	9	8465336	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5812533	8465336	132748095	547	92541											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18622356	18622356	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagtataaatcccagctctCcgcaaccaaatgtaagacac	6	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18622356	G	G	18622356	3	3	91	1	0	0	0	0	1	0	0	0	274	855	30	4	608	4	ADAMTSL1	9	18622356	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	10157020	18622356	122591075	548	92542											
CDKN2A	1029	broad.mit.edu	37	chr9	21971108	21971108	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagccctcccgggcagcgtCgtgcacgggtcgggtgagag	18	12	0	1	rs11552822		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21971108	T	T	21971108	3	4	91	1	0	0	0	0	1	0	0	0	3191	884	31	4	228	4	CDKN2A	9	21971108	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3348752	21971108	119242323	549	92543											
DNAI1	27019	broad.mit.edu	37	chr9	34514443	34514443	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacctatgacgcccacaacAtgtcagtggacactgtgtcc	8	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34514443	G	G	34514443	3	3	91	1	0	0	0	0	1	0	0	0	4649	217	8	5	1687	5	DNAI1	9	34514443	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	12543335	34514443	106698988	550	92544											
C9orf131	138724	broad.mit.edu	37	chr9	35042600	35042600	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagatgtgaggctgggtgaGtaaccactgacactagattt	12	7	0	5			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35042600	T	T	35042600	1	4	91	0	1	0	0	0	0	0	0	0	2483	1044	36	3		3	C9orf131	9	35042600	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	528157	35042600	106170831	551	92545											
TRPM3	80036	broad.mit.edu	37	chr9	73230719	73230719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaacctggtggaaggctgGgaacagatgtctgacctaag	13	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73230719	T	T	73230719	1	4	91	0	1	0	0	0	0	0	0	0	16712	1247	43	2		2	TRPM3	9	73230719	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	38188119	73230719	67982712	552	92546											
TRPM3	80036	broad.mit.edu	37	chr9	73442736	73442736	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcatacctcctacgagccAtgccagtgggaacaaccgct	9	15	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73442736	T	T	73442736	1	4	91	0	1	0	0	0	0	0	0	0	16712	232	8	5		5	TRPM3	9	73442736	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	212017	73442736	67770695	553	92547											
VPS13A	23230	broad.mit.edu	37	chr9	79862339	79862339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaataatatttgatttatgAtacagcatttggggtgtttc	8	4	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79862339	G	G	79862339	1	3	91	0	1	0	0	0	0	0	0	0	17316	348	12	5		5	VPS13A	9	79862339	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	6419603	79862339	61351092	554	92548											
SEMA4D	10507	broad.mit.edu	37	chr9	92007407	92007407	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttcgggagatgatgggttCacttcccaaaaaattatacg	9	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92007407	A	A	92007407	4	1	91	1	0	0	0	0	0	1	0	0	14147	835	29	3	2641	3	SEMA4D	9	92007407	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	12145068	92007407	49206024	555	92549											
ROR2	4920	broad.mit.edu	37	chr9	94486259	94486259	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgcattgggatctgcacCgggtagaagttgggcaggta	15	7	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94486259	T	T	94486259	2	4	91	1	0	0	0	0	0	0	0	1	13638	639	23	4		4	ROR2	9	94486259	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2478852	94486259	46727172	556	92550											
TBC1D2	55357	broad.mit.edu	37	chr9	100983155	100983155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctggctcaggaagtccCtgttggcagcgtcggggcgc	16	13	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100983155	A	A	100983155	3	1	91	1	0	0	0	0	1	0	0	0	15727	681	24	2	1451	2	TBC1D2	9	100983155	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6496896	100983155	40230276	557	92551											
COL15A1	1306	broad.mit.edu	37	chr9	101797531	101797531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtctcagggcagaggctGtgcggattcccctgtgagcc	15	12	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101797531	T	T	101797531	1	4	91	0	1	0	0	0	0	0	0	0	3704	1392	48	3		3	COL15A1	9	101797531	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	814376	101797531	39415900	558	92552											
C9orf5	23731	broad.mit.edu	37	chr9	111782845	111782845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacagtatcctatttttaCaatcttttggagccctaatg	5	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111782845	A	A	111782845	1	1	91	0	1	0	0	0	0	0	0	0	2512	493	17	3		3	C9orf5	9	111782845	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	9985314	111782845	29430586	559	92553											
PTPN3	5774	broad.mit.edu	37	chr9	112145676	112145676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattcagcacctgcccctcCaccgtgcccctcaggctgcg	9	19	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112145676	A	A	112145676	1	1	91	0	1	0	0	0	0	0	0	0	12897	609	21	2		2	PTPN3	9	112145676	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	362831	112145676	29067755	560	92554											
SVEP1	79987	broad.mit.edu	37	chr9	113139550	113139550	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatctgaagagcaactcaCgttcttcacagaggcgcccc	9	13	4	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113139550	A	A	113139550	5	1	91	1	0	0	0	0	0	0	1	0	15538	550	19	3	226	3	SVEP1	9	113139550	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	993874	113139550	28073881	561	92555											
SVEP1	79987	broad.mit.edu	37	chr9	113228273	113228273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgattcacaagtctcaagtCcactgtatgagtaggtgcct	9	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113228273	A	A	113228273	3	1	91	1	0	0	0	0	1	0	0	0	15538	855	30	3	7645	3	SVEP1	9	113228273	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	88723	113228273	27985158	562	92556											
C9orf84	158401	broad.mit.edu	37	chr9	114454436	114454436	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagccggtctccttgattctAtattaattagaaaaggagta	8	6	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114454436	G	G	114454436	3	3	91	1	0	0	0	0	1	0	0	0	2526	449	16	5	713	5	C9orf84	9	114454436	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1226163	114454436	26758995	563	92557											
FKBP15	23307	broad.mit.edu	37	chr9	115969397	115969397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtggaagggctaaataaCcgttttgcaacaaacagagg	11	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115969397	A	A	115969397	1	1	91	0	1	0	0	0	0	0	0	0	5962	522	18	3		3	FKBP15	9	115969397	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1514961	115969397	25244034	564	92558											
DFNB31	25861	broad.mit.edu	37	chr9	117228516	117228517	+	Intron	DEL	AG	-	-													cagcaaagagctccatgcacAgagttttccctccctcaggc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117228517	-	-	117228516	6	5	91	0	1	1	0	1	0	0	0	0	4495	203	7	0		0	DFNB31	9	117228516	Intron	DEL	AG	TCGA-17-Z062-01A-01W-0747-08	1259119	117228516	23984915	565	92559											
ASTN2	23245	broad.mit.edu	37	chr9	119858334	119858334	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactattacctttgctgcggCggcgactgcggtactgctcc	11	14	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119858334	A	A	119858334	3	1	91	1	0	0	0	0	1	0	0	0	1069	768	27	3	3062	3	ASTN2	9	119858334	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2629818	119858334	21355097	566	92560											
ASTN2	23245	broad.mit.edu	37	chr9	119976740	119976740	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcgggagacatggttggcCcgcctaggtggctcctcatc	14	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119976740	A	A	119976740	2	1	91	1	0	0	0	0	0	0	0	1	1069	610	22	2		2	ASTN2	9	119976740	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	118406	119976740	21236691	567	92561											
ASTN2	23245	broad.mit.edu	37	chr9	119977022	119977022	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgcgatgaggccaccCtggagcaggaaggaaggaca	16	10	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119977022	A	A	119977022	5	1	91	1	0	0	0	0	0	0	1	0	1069	695	24	2	3548	2	ASTN2	9	119977022	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	282	119977022	21236409	568	92562											
TLR4	7099	broad.mit.edu	37	chr9	120476971	120476971	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatttcttgcccagctggGtccaacacttgttcagttaa	9	11	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120476971	T	T	120476971	1	4	91	0	1	0	0	0	0	0	0	0	16076	1276	44	3		3	TLR4	9	120476971	3'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	499949	120476971	20736460	569	92563											
DBC1	1620	broad.mit.edu	37	chr9	122075649	122075649	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgcttttctgccggccTttttcctctcattcttgctc	5	14	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122075649	A	A	122075649	1	1	91	1	0	0	0	0	0	0	0	0	4280	1624	56	5		5	DBC1	9	122075649	Translation_Start_Site	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1598678	122075649	19137782	570	92564											
SPTAN1	6709	broad.mit.edu	37	chr9	131346727	131346727	+	Frame_Shift_Del	DEL	A	-	-													ggccgattctctgcggttgcAgcagctcttccgggatgttg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131346727	-	-	131346727	7	5	91	1	0	1	0	1	0	0	0	0	15235	188	7	0	2422	0	SPTAN1	9	131346727	Frame_Shift_Del	DEL	A	TCGA-17-Z062-01A-01W-0747-08	9271078	131346727	9866704	571	92565											
PHYHD1	254295	broad.mit.edu	37	chr9	131689416	131689416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatagtggctgaaatggatGttcctctccactgccgcaca	10	11	1	2	rs17481121		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131689416	T	T	131689416	3	4	91	1	0	0	0	0	1	0	0	0	11960	1377	48	3	139	3	PHYHD1	9	131689416	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	342689	131689416	9524015	572	92566											
GPR107	57720	broad.mit.edu	37	chr9	132854594	132854594	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattcctctccccaaattatAcatctcaatggcctttttct	2	13	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132854594	T	T	132854594	3	4	91	1	0	0	0	0	1	0	0	0	6688	391	14	5	831	5	GPR107	9	132854594	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1165178	132854594	8358837	573	92567											
LAMC3	10319	broad.mit.edu	37	chr9	133942270	133942270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggtggagggacgcttGctctgcttcacacccaccct	13	13	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133942270	T	T	133942270	1	4	91	0	1	0	0	0	0	0	0	0	8688	1334	46	3		3	LAMC3	9	133942270	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1087676	133942270	7271161	574	92568											
LAMC3	10319	broad.mit.edu	37	chr9	133944216	133944216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctgtgatctgaggcccCagccagctgcagccggcaga	15	13	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133944216	A	A	133944216	1	1	91	0	1	0	0	0	0	0	0	0	8688	609	21	2		2	LAMC3	9	133944216	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1946	133944216	7269215	575	92569											
SETX	23064	broad.mit.edu	37	chr9	135140162	135140162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcaacagatgtcttggCaaatccactgtctagcttgc	9	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135140162	A	A	135140162	3	1	91	1	0	0	0	0	1	0	0	0	14254	710	25	3	539	3	SETX	9	135140162	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1195946	135140162	6073269	576	92570											
NDOR1	27158	broad.mit.edu	37	chr9	140110302	140110302	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggttgttgccagggctcccCagctgaacctcaaggacctg	13	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140110302	T	T	140110302	1	4	91	0	1	0	0	0	0	0	0	0	10344	609	21	4		4	NDOR1	9	140110302	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4970140	140110302	1103129	577	92571											
DIP2C	22982	broad.mit.edu	37	chr10	435891	435891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtgtcaggtgtcccggtTagaaccagggtcccaaggag	14	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	435891	A	A	435891	1	1	91	0	1	0	0	0	0	0	0	0	4569	1769	61	5		5	DIP2C	10	435891	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08		435891	135098856	578	92572											
SFMBT2	57713	broad.mit.edu	37	chr10	7409776	7409776	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgatcgtggccacccagtAcgtgtccgggttgttcttat	11	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7409776	T	T	7409776	3	4	91	1	0	0	0	0	1	0	0	0	14271	391	14	5	2485	5	SFMBT2	10	7409776	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	6973885	7409776	128124971	579	92573											
ACBD7	414149	broad.mit.edu	37	chr10	15121112	15121113	+	Intron	DNP	GA	AG	AG													aggaactcaaagagcaggaaGaggaaggttccaagtagaaa							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	15121113	AG	AG	15121112	1	1	91	0	1	0	0	0	0	0	0	0	127	957	33	4		4	ACBD7	10	15121112	Intron	DNP	GA	TCGA-17-Z062-01A-01W-0747-08	7711336	15121112	120413635	580	92574											
ITGA8	8516	broad.mit.edu	37	chr10	15648260	15648260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcttgcttgagaaaatgcCgtcaaagactgtgaaggact	12	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15648260	A	A	15648260	1	1	91	0	1	0	0	0	0	0	0	0	7952	667	23	1		1	ITGA8	10	15648260	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	527148	15648260	119886487	581	92575											
ITGA8	8516	broad.mit.edu	37	chr10	15689099	15689099	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgctagcagagagtagagtCactttgggttatttgtaatc	11	6	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15689099	G	G	15689099	1	3	91	0	1	0	0	0	0	0	0	0	7952	841	29	4		4	ITGA8	10	15689099	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	40839	15689099	119845648	582	92576											
RSU1	6251	broad.mit.edu	37	chr10	16635592	16635592	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatagaagaatctccaaaaaTattcagtaagccaaagaaaa	5	6	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16635592	C	C	16635592	1	2	91	0	1	0	0	0	0	0	0	0	13827	1421	49	5		5	RSU1	10	16635592	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	946493	16635592	118899155	583	92577											
PTPLA	9200	broad.mit.edu	37	chr10	17636166	17636166	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttcaaaaatttccacatCatatgtcaaatcaaagtact	2	10	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17636166	A	A	17636166	1	1	91	0	1	0	0	0	0	0	0	0	12880	841	29	3		3	PTPLA	10	17636166	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1000574	17636166	117898581	584	92578											
PLXDC2	84898	broad.mit.edu	37	chr10	20534524	20534524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttaatatttaccacatGgcttctccatttttcagttc	5	9	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20534524	T	T	20534524	1	4	91	0	1	0	0	0	0	0	0	0	12213	1363	47	2		2	PLXDC2	10	20534524	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2898358	20534524	115000223	585	92579											
MKX	283078	broad.mit.edu	37	chr10	27964308	27964308	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgttgatctccttccaataCgtgtcatccttgcttggtcc	8	13	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27964308	T	T	27964308	2	4	91	1	0	0	0	0	0	0	0	1	9703	523	19	4		4	MKX	10	27964308	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7429784	27964308	107570439	586	92580											
SVIL	6840	broad.mit.edu	37	chr10	29864219	29864219	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctaagtgtgcatatgcatAtgagtgccatgggctaggcc	12	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29864219	G	G	29864219	1	3	91	0	1	0	0	0	0	0	0	0	15539	464	16	5		5	SVIL	10	29864219	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1899911	29864219	105670528	587	92581											
KIAA1462	57608	broad.mit.edu	37	chr10	30317994	30317994	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacacacatttatgggcacCgtgtcttccaagtaggggtt	10	11	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30317994	T	T	30317994	2	4	91	1	0	0	0	0	0	0	0	1	8304	639	23	4		4	KIAA1462	10	30317994	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	453775	30317994	105216753	588	92582											
ZEB1	6935	broad.mit.edu	37	chr10	31809025	31809025	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttatatgtaataattcagtGaatataatttgtttgtttgt	6	1	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31809025	T	T	31809025	1	4	91	0	1	0	0	0	0	0	0	0	17749	1305	45	3		3	ZEB1	10	31809025	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1491031	31809025	103725722	589	92583											
ERCC6	2074	broad.mit.edu	37	chr10	50740774	50740774	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaggctctactgcctggatCtgatgtcggtcgatgtgcag	13	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50740774	G	G	50740774	3	3	91	1	0	0	0	0	1	0	0	0	5259	912	32	4	4324	4	ERCC6	10	50740774	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	18931749	50740774	84793973	590	92584											
PCDH15	65217	broad.mit.edu	37	chr10	55566686	55566686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagtcgaacaggggaagCaacttttaagttgtccgtga	11	9	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55566686	A	A	55566686	3	1	91	1	0	0	0	0	1	0	0	0	11605	710	25	3	350	3	PCDH15	10	55566686	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4825912	55566686	79968061	591	92585											
PCDH15	65217	broad.mit.edu	37	chr10	55913025	55913025	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catatgtgatctccccatttGacccttcgtctgcgtcgact	7	14	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55913025	T	T	55913025	4	4	91	1	0	0	0	0	0	1	0	0	11605	1294	45	3	5947	3	PCDH15	10	55913025	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	346339	55913025	79621722	592	92586											
ANK3	288	broad.mit.edu	37	chr10	61898827	61898827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatatttgtctgtgtccCcggtcattgcatcttcacct	7	12	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61898827	A	A	61898827	3	1	91	1	0	0	0	0	1	0	0	0	622	623	22	2	10893	2	ANK3	10	61898827	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5985802	61898827	73635920	593	92587											
CTNNA3	29119	broad.mit.edu	37	chr10	68936661	68936661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataatggactcttccctAgagactccagaaaataatgc	6	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68936661	G	G	68936661	1	3	91	0	1	0	0	0	0	0	0	0	4048	435	15	5		5	CTNNA3	10	68936661	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	7037834	68936661	66598086	594	92588											
HERC4	26091	broad.mit.edu	37	chr10	69714447	69714447	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgatgagcaagaaaaattCtttgcgcacccctcctgcat	7	12	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69714447	T	T	69714447	3	4	91	1	0	0	0	0	1	0	0	0	7127	922	32	4	935	4	HERC4	10	69714447	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	777786	69714447	65820300	595	92589											
ADAMTS14	140766	broad.mit.edu	37	chr10	72518094	72518095	+	Intron	DNP	GG	TT	TT													ccagacctttcagtggccctGgtgttgcagcatgggccact							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	72518095	TT	TT	72518094	1	4	91	0	1	0	0	0	0	0	0	0	259	1363	47	2		2	ADAMTS14	10	72518094	Intron	DNP	GG	TCGA-17-Z062-01A-01W-0747-08	2803647	72518094	63016653	596	92590											
PSAP	5660	broad.mit.edu	37	chr10	73590956	73590956	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgcatgaagcagacatgTtcggtttcggaagccagtca	11	10	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73590956	G	G	73590956	3	3	91	1	0	0	0	0	1	0	0	0	12749	1725	60	5	1332	5	PSAP	10	73590956	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1072862	73590956	61943791	597	92591											
ANXA7	310	broad.mit.edu	37	chr10	75160471	75160471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcatctgaatttatgaccCctgctcaagcatatctgtaa	7	10	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75160471	A	A	75160471	1	1	91	0	1	0	0	0	0	0	0	0	723	638	22	2		2	ANXA7	10	75160471	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1569515	75160471	60374276	598	92592											
KCNMA1	3778	broad.mit.edu	37	chr10	78674559	78674559	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttctccccataccttcCtcccagccccctcaaaacaa	1	19	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78674559	A	A	78674559	1	1	91	0	1	0	0	0	0	0	0	0	8143	696	24	2		2	KCNMA1	10	78674559	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3514088	78674559	56860188	599	92593											
ZMIZ1	57178	broad.mit.edu	37	chr10	81070958	81070958	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtaagttggggtcgccActcgccttggcctggggcta	16	10	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81070958	T	T	81070958	1	4	91	0	1	0	0	0	0	0	0	0	17822	174	6	5		5	ZMIZ1	10	81070958	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2396399	81070958	54463789	600	92594											
PPIF	10105	broad.mit.edu	37	chr10	81112224	81112224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattcgtgcacttttagggGcaggcagtttacagccaggc	14	9	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81112224	T	T	81112224	1	4	91	0	1	0	0	0	0	0	0	0	12424	1218	42	3		3	PPIF	10	81112224	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	41266	81112224	54422523	601	92595											
CDHR1	92211	broad.mit.edu	37	chr10	85957602	85957602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgaatctggtgagtgcaCgtccaaggcagtccctggca	13	12	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85957602	A	A	85957602	1	1	91	0	1	0	0	0	0	0	0	0	3148	551	19	3		3	CDHR1	10	85957602	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4845378	85957602	49577145	602	92596											
CDHR1	92211	broad.mit.edu	37	chr10	85964251	85964251	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagggtccccatattgccCatcaggcagcggctgttcct	13	13	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85964251	T	T	85964251	1	4	91	0	1	0	0	0	0	0	0	0	3148	609	21	4		4	CDHR1	10	85964251	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6649	85964251	49570496	603	92597											
KIF20B	9585	broad.mit.edu	37	chr10	91479122	91479122	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttataaaataatcattttctAgtggacagttcttgtctttt	5	5	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91479122	T	T	91479122	1	4	91	0	1	0	0	0	0	0	0	0	8357	435	15	5		5	KIF20B	10	91479122	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	5514871	91479122	44055625	604	92598											
HECTD2	143279	broad.mit.edu	37	chr10	93184926	93184926	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttatatacgtttttatctAttatctactcgtcatcaaat	2	7	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93184926	G	G	93184926	1	3	91	0	1	0	0	0	0	0	0	0	7107	464	16	5		5	HECTD2	10	93184926	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1705804	93184926	42349821	605	92599											
CPEB3	22849	broad.mit.edu	37	chr10	93851774	93851774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaataagatgactaaagaCaaacccactgatttgtgcat	8	7	0	5			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93851774	A	A	93851774	1	1	91	0	1	0	0	0	0	0	0	0	3834	493	17	3		3	CPEB3	10	93851774	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	666848	93851774	41682973	606	92600											
CPEB3	22849	broad.mit.edu	37	chr10	93897082	93897082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatatcatcgtgggtacCcctggccatatatctgatat	7	13	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93897082	A	A	93897082	1	1	91	0	1	0	0	0	0	0	0	0	3834	638	22	2		2	CPEB3	10	93897082	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	45308	93897082	41637665	607	92601											
BLNK	29760	broad.mit.edu	37	chr10	97960647	97960647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacagtctctgttctcaaGgttcactccaaatgtcttct	5	11	5	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97960647	T	T	97960647	1	4	91	0	1	0	0	0	0	0	0	0	1453	1015	35	2		2	BLNK	10	97960647	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4063565	97960647	37574100	608	92602											
PIK3AP1	118788	broad.mit.edu	37	chr10	98369361	98369361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctctcaaacccaaaccagGccccactggagatctcctgg	7	17	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98369361	T	T	98369361	1	4	91	0	1	0	0	0	0	0	0	0	12003	1218	42	3		3	PIK3AP1	10	98369361	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	408714	98369361	37165386	609	92603											
SLIT1	6585	broad.mit.edu	37	chr10	98773983	98773983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagcctgtggctgccgGttaatatcaccattccacgg	12	11	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98773983	T	T	98773983	1	4	91	0	1	0	0	0	0	0	0	0	14853	1276	44	3		3	SLIT1	10	98773983	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	404622	98773983	36760764	610	92604											
ABLIM1	3983	broad.mit.edu	37	chr10	116233018	116233018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaccaaaacatcttgcCtaacacagttatactcttca	2	12	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116233018	A	A	116233018	1	1	91	0	1	0	0	0	0	0	0	0	94	696	24	2		2	ABLIM1	10	116233018	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	17459035	116233018	19301729	611	92605											
PNLIP	5406	broad.mit.edu	37	chr10	118314956	118314956	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctttccaaatggaggagtgGaaatgcctggatgtaaaaag	12	5	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118314956	T	T	118314956	4	4	91	1	0	0	0	0	0	1	0	0	12244	1175	41	3	774	3	PNLIP	10	118314956	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2081938	118314956	17219791	612	92606											
KIAA1598	57698	broad.mit.edu	37	chr10	118738949	118738949	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagaggctgcagaaaaGgggcttctgctttttatttt	13	5	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118738949	A	A	118738949	1	1	91	0	1	0	0	0	0	0	0	0	8316	1015	35	4		4	KIAA1598	10	118738949	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	423993	118738949	16795798	613	92607											
PDZD8	118987	broad.mit.edu	37	chr10	119044815	119044815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcttcctcttcataacCcgattggcatgagcttgaca	9	12	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119044815	A	A	119044815	3	1	91	1	0	0	0	0	1	0	0	0	11799	623	22	2	2039	2	PDZD8	10	119044815	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	305866	119044815	16489932	614	92608											
TACC2	10579	broad.mit.edu	37	chr10	123969979	123969979	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcggtggaaggaagtcccttCcgtcccccgtcacactcctt	9	16	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123969979	T	T	123969979	2	4	91	1	0	0	0	0	0	0	0	1	15621	854	30	4		4	TACC2	10	123969979	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4925164	123969979	11564768	615	92609											
KNDC1	85442	broad.mit.edu	37	chr10	134981838	134981838	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtgcaggtgggggtaatGtgccacaccccccttttacc	11	12	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134981838	A	A	134981838	1	1	91	0	1	0	0	0	0	0	0	0	8497	1392	48	4		4	KNDC1	10	134981838	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	11011859	134981838	552909	616	92610											
HBG1	3047	broad.mit.edu	37	chr11	5269700	5269701	+	Missense_Mutation	DNP	CA	AG	AG													tggattgccaaaacggtcacCagcacatttcccaggagctg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	5269701	AG	AG	5269700	3	1	91	1	0	0	0	0	1	0	0	0	7048	581	21	2	114	2	HBG1	11	5269700	Missense_Mutation	DNP	CA	TCGA-17-Z062-01A-01W-0747-08		5269700	129736816	617	92611											
CNGA4	1262	broad.mit.edu	37	chr11	6260936	6260936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcttccccgacttgcagCacggttatctggtggcctgg	12	14	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6260936	A	A	6260936	3	1	91	1	0	0	0	0	1	0	0	0	3631	710	25	3	197	3	CNGA4	11	6260936	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	991236	6260936	128745580	618	92612											
OR5P3	120066	broad.mit.edu	37	chr11	7846762	7846763	+	Missense_Mutation	DNP	CC	AT	AT													cataaatgaaggtaatggtcCcatagaacagagtgactgca							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	7846763	AT	AT	7846762	3	1	91	1	0	0	0	0	1	0	0	0	11273	623	22	2	180	2	OR5P3	11	7846762	Missense_Mutation	DNP	CC	TCGA-17-Z062-01A-01W-0747-08	1585826	7846762	127159754	619	92613											
USH1C	10083	broad.mit.edu	37	chr11	17519711	17519711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggccttattcttacccCgccctgattccaggccttct	9	15	2	1	rs142751309	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17519711	A	A	17519711	3	1	91	1	0	0	0	0	1	0	0	0	17160	652	23	1	227	1	USH1C	11	17519711	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	9672949	17519711	117486805	620	92614											
NAV2	89797	broad.mit.edu	37	chr11	19967974	19967974	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaggctcggcggctgcGgacagtgaagaacatcgctg	15	11	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19967974	A	A	19967974	3	1	91	1	0	0	0	0	1	0	0	0	10278	1116	39	4	2287	4	NAV2	11	19967974	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2448263	19967974	115038542	621	92615											
SLC6A5	9152	broad.mit.edu	37	chr11	20657792	20657792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagagaaggccctctggGctctgggaagagcagccttg	16	10	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20657792	T	T	20657792	1	4	91	0	1	0	0	0	0	0	0	0	14801	1218	42	3		3	SLC6A5	11	20657792	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	689818	20657792	114348724	622	92616											
ANO5	203859	broad.mit.edu	37	chr11	22249096	22249096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcctcatcgaagatcaGgcaaccttctttccatcctc	4	16	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22249096	T	T	22249096	3	4	91	1	0	0	0	0	1	0	0	0	700	991	35	2	638	2	ANO5	11	22249096	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1591304	22249096	112757420	623	92617											
SLC17A6	57084	broad.mit.edu	37	chr11	22384370	22384370	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagtgttttatgtctaCggtatgttatatttctatgc	7	6	4	0	rs144984406		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22384370	T	T	22384370	2	4	91	1	0	0	0	0	0	0	0	1	14534	550	19	4		4	SLC17A6	11	22384370	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	135274	22384370	112622146	624	92618											
SLC17A6	57084	broad.mit.edu	37	chr11	22399127	22399127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatgaagaaacaggggaCattactcaaaattatataaa	7	6	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22399127	A	A	22399127	3	1	91	1	0	0	0	0	1	0	0	0	14534	477	17	3	1636	3	SLC17A6	11	22399127	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	14757	22399127	112607389	625	92619											
ANO3	63982	broad.mit.edu	37	chr11	26463526	26463526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaccgtctcggagatcCctgccttgcctcgcccagag	9	15	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26463526	A	A	26463526	2	1	91	1	0	0	0	0	0	0	0	1	698	610	22	2		2	ANO3	11	26463526	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4064399	26463526	108542990	626	92620											
BBOX1	8424	broad.mit.edu	37	chr11	27137133	27137133	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcaacatattttccacaAagcatgatgatgaccagtat	6	9	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27137133	T	T	27137133	1	4	91	0	1	0	0	0	0	0	0	0	1339	29	1	5		5	BBOX1	11	27137133	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	673607	27137133	107869383	627	92621											
WT1	7490	broad.mit.edu	37	chr11	32437853	32437853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgagaaatgctactccCtccattttgtccccagcatg	7	12	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32437853	A	A	32437853	1	1	91	0	1	0	0	0	0	0	0	0	17535	696	24	2		2	WT1	11	32437853	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5300720	32437853	102568663	628	92622											
CCDC73	493860	broad.mit.edu	37	chr11	32724418	32724418	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctatccttatgaaattaCctgctttttaaaaactgcca	4	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32724418	A	A	32724418	5	1	91	1	0	0	0	0	0	0	1	0	2874	521	18	3	3019	3	CCDC73	11	32724418	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	286565	32724418	102282098	629	92623											
TRAF6	7189	broad.mit.edu	37	chr11	36511491	36511491	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcactaataatgtgtcatccTtaatgaaagttctttgtctt	6	7	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36511491	A	A	36511491	3	1	91	1	0	0	0	0	1	0	0	0	16569	1609	56	5	106	5	TRAF6	11	36511491	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	3787073	36511491	98495025	630	92624											
TRAF6	7189	broad.mit.edu	37	chr11	36520261	36520261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaacaactttaattcaCcatatataaattctccattt	0	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36520261	A	A	36520261	1	1	91	0	1	0	0	0	0	0	0	0	16569	522	18	3		3	TRAF6	11	36520261	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8770	36520261	98486255	631	92625											
LRRC4C	57689	broad.mit.edu	37	chr11	40137279	40137279	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttcaaaggcaccttctgaGatgtatgaaagtcttttcaa	7	9	4	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40137279	T	T	40137279	2	4	91	1	0	0	0	0	0	0	0	1	9095	932	33	3		3	LRRC4C	11	40137279	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3617018	40137279	94869237	632	92626											
TTC17	55761	broad.mit.edu	37	chr11	43423014	43423014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaatcatcagatatgccGactggtcaaccagcagcata	9	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43423014	T	T	43423014	3	4	91	1	0	0	0	0	1	0	0	0	16810	1058	37	3	1276	3	TTC17	11	43423014	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3285735	43423014	91583502	633	92627											
PRDM11	56981	broad.mit.edu	37	chr11	45117285	45117285	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgctttctgctctggaaTgcagattatgatggccgcag	11	9	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45117285	C	C	45117285	1	2	91	0	1	0	0	0	0	0	0	0	12558	1479	51	5		5	PRDM11	11	45117285	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1694271	45117285	89889231	634	92628											
CHST1	8534	broad.mit.edu	37	chr11	45672159	45672159	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggccgggctcttgccctgGgtgaagcgggggatgagcgt	19	10	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45672159	T	T	45672159	2	4	91	1	0	0	0	0	0	0	0	1	3428	1219	43	2		2	CHST1	11	45672159	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	554874	45672159	89334357	635	92629											
LRP4	4038	broad.mit.edu	37	chr11	46884069	46884069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagatgggattactcagcaGccgttactgacttatttggg	12	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46884069	T	T	46884069	1	4	91	0	1	0	0	0	0	0	0	0	9046	986	34	3		3	LRP4	11	46884069	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1211910	46884069	88122447	636	92630											
OR4S1	256148	broad.mit.edu	37	chr11	48327669	48327669	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaggctagtatctttcTtactccataatcttggtggt	9	7	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48327669	A	A	48327669	1	1	91	0	1	0	0	0	0	0	0	0	11176	1624	56	5		5	OR4S1	11	48327669	5'Flank	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1443600	48327669	86678847	637	92631											
OR4C11	219429	broad.mit.edu	37	chr11	55371502	55371502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacatagcgatcaacagcCatgagaatgaggacaaagat	10	9	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55371502	A	A	55371502	3	1	91	1	0	0	0	0	1	0	0	0	11139	594	21	2	586	2	OR4C11	11	55371502	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7043833	55371502	79635014	638	92632											
OR4P4	81300	broad.mit.edu	37	chr11	55406718	55406718	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacagagatgaagaacgcCatgaggaaagtgtggtgttg	14	5	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55406718	A	A	55406718	2	1	91	1	0	0	0	0	0	0	0	1	11174	581	21	2		2	OR4P4	11	55406718	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	35216	55406718	79599798	639	92633											
OR4S2	219431	broad.mit.edu	37	chr11	55418706	55418706	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catttctttggttgcactgaGatcttcatccttactgtaat	6	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55418706	C	C	55418706	3	2	91	1	0	0	0	0	1	0	0	0	11177	933	33	4	329	4	OR4S2	11	55418706	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	11988	55418706	79587810	640	92634											
OR5D13	390142	broad.mit.edu	37	chr11	55541459	55541459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaataattttatctgtgaCcactctgtaattgtttctgc	5	7	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55541459	A	A	55541459	3	1	91	1	0	0	0	0	1	0	0	0	11248	506	18	3	548	3	OR5D13	11	55541459	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	122753	55541459	79465057	641	92635											
OR5D14	219436	broad.mit.edu	37	chr11	55563697	55563697	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcctcacttcctatgttttCatttttgtgactgtactaaa	4	9	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55563697	G	G	55563697	3	3	91	1	0	0	0	0	1	0	0	0	11249	825	29	4	668	4	OR5D14	11	55563697	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	22238	55563697	79442819	642	92636											
OR5L2	26338	broad.mit.edu	37	chr11	55595053	55595053	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgctggccgtgatggcctAtgaccgctttgtggccatct	12	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55595053	G	G	55595053	3	3	91	1	0	0	0	0	1	0	0	0	11265	449	16	5	361	5	OR5L2	11	55595053	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	31356	55595053	79411463	643	92637											
OR5I1	10798	broad.mit.edu	37	chr11	55703819	55703819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcagttcagggcgagttgGaaaacctaatagaataaact	10	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55703819	T	T	55703819	3	4	91	1	0	0	0	0	1	0	0	0	11258	1174	41	3	889	3	OR5I1	11	55703819	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	108766	55703819	79302697	644	92638											
OR8K1	390157	broad.mit.edu	37	chr11	56113826	56113826	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcttacaattggtatgcCactcagctagcattctttga	6	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56113826	A	A	56113826	2	1	91	1	0	0	0	0	0	0	0	1	11337	581	21	2		2	OR8K1	11	56113826	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	410007	56113826	78892690	645	92639											
OR5M1	390168	broad.mit.edu	37	chr11	56380109	56380109	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatctgtgttccgtaggctAtagatcaatgggttcagcat	10	8	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56380109	G	G	56380109	2	3	91	1	0	0	0	0	0	0	0	1	11266	456	16	5		5	OR5M1	11	56380109	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	266283	56380109	78626407	646	92640											
SSRP1	6749	broad.mit.edu	37	chr11	57102589	57102589	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcgttgaactccagtgtctCtgccatgtcgacccctgcct	9	15	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57102589	T	T	57102589	3	4	91	1	0	0	0	0	1	0	0	0	15312	922	32	4	2186	4	SSRP1	11	57102589	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	722480	57102589	77903927	647	92641											
OR9Q2	219957	broad.mit.edu	37	chr11	57958874	57958874	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaggccactaggaaagcCctgagcaaatcaaagcctgc	10	11	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57958874	A	A	57958874	2	1	91	1	0	0	0	0	0	0	0	1	11350	610	22	2		2	OR9Q2	11	57958874	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	856285	57958874	77047642	648	92642											
OR10Q1	219960	broad.mit.edu	37	chr11	57995801	57995801	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgggaggcacatcgcagaGgaagtggttgatttcctggt	16	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57995801	A	A	57995801	3	1	91	1	0	0	0	0	1	0	0	0	11010	1000	35	4	416	4	OR10Q1	11	57995801	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	36927	57995801	77010715	649	92643											
GLYAT	10249	broad.mit.edu	37	chr11	58477334	58477334	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catagcttcattgctgtagtCtacatgagaatagacaggaa	9	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58477334	A	A	58477334	3	1	91	1	0	0	0	0	1	0	0	0	6543	913	32	3	98	3	GLYAT	11	58477334	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	481533	58477334	76529182	650	92644											
OR4D9	390199	broad.mit.edu	37	chr11	59282816	59282816	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagggggcgatgcacaggccTcatcgtggcttcctgggtgg	17	10	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59282816	A	A	59282816	3	1	91	1	0	0	0	0	1	0	0	0	11153	1551	54	5	433	5	OR4D9	11	59282816	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	805482	59282816	75723700	651	92645											
MS4A3	932	broad.mit.edu	37	chr11	59828682	59828682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggggtcagcctctgccCatggtaccccaggcagtgag	14	13	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59828682	A	A	59828682	3	1	91	1	0	0	0	0	1	0	0	0	9955	594	21	2	51	2	MS4A3	11	59828682	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	545866	59828682	75177834	652	92646											
MS4A14	84689	broad.mit.edu	37	chr11	60160052	60160052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattaagcaattttccctGtctccttttctctgcattgc	6	11	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60160052	T	T	60160052	1	4	91	0	1	0	0	0	0	0	0	0	9952	1392	48	3		3	MS4A14	11	60160052	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	331370	60160052	74846464	653	92647											
MS4A1	931	broad.mit.edu	37	chr11	60231853	60231853	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccttctttcccacatgtcaGagaagtacctatttttttcg	5	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60231853	A	A	60231853	1	1	91	0	1	0	0	0	0	0	0	0	9948	957	33	4		4	MS4A1	11	60231853	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	71801	60231853	74774663	654	92648											
MS4A12	54860	broad.mit.edu	37	chr11	60269496	60269496	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgtcagcatccaaggAgctttcccgttgtctggtaa	10	11	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60269496	T	T	60269496	3	4	91	1	0	0	0	0	1	0	0	0	9950	304	11	5	465	5	MS4A12	11	60269496	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	37643	60269496	74737020	655	92649											
TMEM132A	54972	broad.mit.edu	37	chr11	60698117	60698117	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccaccgtgctgggctcacAgagccagattccaggtgggc	14	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60698117	T	T	60698117	2	4	91	1	0	0	0	0	0	0	0	1	16168	175	7	5		5	TMEM132A	11	60698117	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	428621	60698117	74308399	656	92650											
PGA3	643834	broad.mit.edu	37	chr11	60971721	60971721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctggtagatgaacagCccctggagaactacctggat	10	13	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60971721	A	A	60971721	3	1	91	1	0	0	0	0	1	0	0	0	11866	739	26	3	205	3	PGA3	11	60971721	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	273604	60971721	74034795	657	92651											
SLC22A8	9376	broad.mit.edu	37	chr11	62782097	62782097	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagggtttgcccaggcataCctctgtcacaatggagtcct	11	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62782097	T	T	62782097	5	4	91	1	0	0	0	0	0	0	1	0	14574	521	18	4	1334	4	SLC22A8	11	62782097	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1810376	62782097	72224419	658	92652											
RCOR2	283248	broad.mit.edu	37	chr11	63681923	63681923	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcggccccccagccgccGggcctgtctgtccatcacac	10	20	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63681923	A	A	63681923	3	1	91	1	0	0	0	0	1	0	0	0	13291	1115	39	4	1028	4	RCOR2	11	63681923	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	899826	63681923	71324593	659	92653											
PYGM	5837	broad.mit.edu	37	chr11	64514076	64514076	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgcatgaggtgctggggcTggcccaagagagtgtgacag	17	8	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64514076	A	A	64514076	1	1	91	0	1	0	0	0	0	0	0	0	12970	1595	55	5		5	PYGM	11	64514076	3'UTR	SNP	T	TCGA-17-Z062-01A-01W-0747-08	832153	64514076	70492440	660	92654											
RIN1	9610	broad.mit.edu	37	chr11	66100057	66100057	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccagggggcaggcggtggTagccctgctccttgtacagg	16	13	0	0	rs151239250		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66100057	A	A	66100057	3	1	91	1	0	0	0	0	1	0	0	0	13482	1638	57	5	313	5	RIN1	11	66100057	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1585981	66100057	68906459	661	92655											
GSTP1	2950	broad.mit.edu	37	chr11	67353817	67353817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcccccaattcctccaGcctgctcccgctggctgagt	8	19	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67353817	T	T	67353817	1	4	91	0	1	0	0	0	0	0	0	0	6910	986	34	3		3	GSTP1	11	67353817	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1253760	67353817	67652699	662	92656											
CHKA	1119	broad.mit.edu	37	chr11	67833207	67833207	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaattctaactgcatgaaaTtgacatgtaattttcctatc	5	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67833207	C	C	67833207	1	2	91	0	1	0	0	0	0	0	0	0	3378	1508	52	5		5	CHKA	11	67833207	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	479390	67833207	67173309	663	92657											
NUMA1	4926	broad.mit.edu	37	chr11	71716300	71716300	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggactccaggggatagcaGgtcttcagatgtggggggca	17	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71716300	T	T	71716300	2	4	91	1	0	0	0	0	0	0	0	1	10845	987	35	2		2	NUMA1	11	71716300	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3883093	71716300	63290216	664	92658											
C2CD3	26005	broad.mit.edu	37	chr11	73803395	73803395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgtgaaccaccgcaccCggctattttatatattttta	8	9	0	1	rs56105159	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73803395	A	A	73803395	1	1	91	0	1	0	0	0	0	0	0	0	2176	667	23	1		1	C2CD3	11	73803395	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2087095	73803395	61203121	665	92659											
RSF1	51773	broad.mit.edu	37	chr11	77377926	77377926	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgctggtgtgagagctacCgtggaataaattagcacaaa	11	9	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377926	A	A	77377926	1	1	91	0	1	0	0	0	0	0	0	0	13810	667	23	1		1	RSF1	11	77377926	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3574531	77377926	57628590	666	92660											
CCDC83	220047	broad.mit.edu	37	chr11	85597313	85597313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaaaggaatattgggaGgagtacaagaatgtagggag	16	1	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85597313	T	T	85597313	3	4	91	1	0	0	0	0	1	0	0	0	2885	991	35	2	428	2	CCDC83	11	85597313	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	8219387	85597313	49409203	667	92661											
TYR	7299	broad.mit.edu	37	chr11	88911103	88911103	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagccagttcctgcagacctTgtgaggactagaggaagaat	12	8	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88911103	C	C	88911103	1	2	91	0	1	0	0	0	0	0	0	0	16939	1827	63	5		5	TYR	11	88911103	5'UTR	SNP	T	TCGA-17-Z062-01A-01W-0747-08	3313790	88911103	46095413	668	92662											
FAT3	120114	broad.mit.edu	37	chr11	92523017	92523017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagctaggatccaaggacGgggaagcggggagaaaaaga	17	5	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92523017	T	T	92523017	1	4	91	0	1	0	0	0	0	0	0	0	5748	1131	39	1		1	FAT3	11	92523017	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3611914	92523017	42483499	669	92663											
FAT3	120114	broad.mit.edu	37	chr11	92533659	92533659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggctaacttgtacagcCctgccttttcacaaagcaca	8	12	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92533659	A	A	92533659	3	1	91	1	0	0	0	0	1	0	0	0	5748	623	22	2	7514	2	FAT3	11	92533659	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	10642	92533659	42472857	670	92664											
PIWIL4	143689	broad.mit.edu	37	chr11	94301943	94301943	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcatcctctagcaatggCttcttgggaacaagcaggat	11	9	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94301943	T	T	94301943	2	4	91	1	0	0	0	0	0	0	0	1	12055	784	28	4		4	PIWIL4	11	94301943	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1768284	94301943	40704573	671	92665											
KIAA1377	57562	broad.mit.edu	37	chr11	101833351	101833351	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaagatgcctatatacctCacaatcctgattcaaaagat	4	10	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101833351	T	T	101833351	3	4	91	1	0	0	0	0	1	0	0	0	8297	826	29	4	1607	4	KIAA1377	11	101833351	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7531408	101833351	33173165	672	92666											
MMP3	4314	broad.mit.edu	37	chr11	102709737	102709737	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcattaccgttgactActgtattagccagaacttgt	6	9	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102709737	T	T	102709737	1	4	91	0	1	0	0	0	0	0	0	0	9760	406	14	5		5	MMP3	11	102709737	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	876386	102709737	32296779	673	92667											
GRIA4	2893	broad.mit.edu	37	chr11	105623600	105623600	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcttatactcctgacagatCcaatgattcagtgattttta	5	8	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105623600	A	A	105623600	1	1	91	0	1	0	0	0	0	0	0	0	6836	870	30	3		3	GRIA4	11	105623600	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2913863	105623600	29382916	674	92668											
ATM	472	broad.mit.edu	37	chr11	108196179	108196179	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatcctgatggaaaaggaaAtggacaactcacaaagagaa	10	6	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108196179	G	G	108196179	3	3	91	1	0	0	0	0	1	0	0	0	1113	101	4	5	6893	5	ATM	11	108196179	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2572579	108196179	26810337	675	92669											
KDELC2	143888	broad.mit.edu	37	chr11	108357194	108357194	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaaacatgaaaaaggcCgcactccattagcaagcacc	8	11	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108357194	T	T	108357194	1	4	91	0	1	0	0	0	0	0	0	0	8188	667	23	4		4	KDELC2	11	108357194	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	161015	108357194	26649322	676	92670											
BCO2	83875	broad.mit.edu	37	chr11	112072759	112072759	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgcagctccttccagggaGatactacagcaaaccttttg	8	13	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112072759	C	C	112072759	3	2	91	1	0	0	0	0	1	0	0	0	1390	942	33	4	1070	4	BCO2	11	112072759	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3715565	112072759	22933757	677	92671											
DSCAML1	57453	broad.mit.edu	37	chr11	117310559	117310559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtccacttcacagcaGgggctggatctcccactgaa	10	14	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117310559	T	T	117310559	3	4	91	1	0	0	0	0	1	0	0	0	4809	1000	35	2	2253	2	DSCAML1	11	117310559	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5237800	117310559	17695957	678	92672											
FXYD6	53826	broad.mit.edu	37	chr11	117712750	117712753	+	Intron	DEL	AAAC	-	-													ctccttttcagctgctgcaaAaacaaacagttggtcaagag							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117712753	-	-	117712750	6	5	91	0	1	1	0	1	0	0	0	0	6182	29	1	0		0	FXYD6	11	117712750	Intron	DEL	AAAC	TCGA-17-Z062-01A-01W-0747-08	402191	117712750	17293766	679	92673											
CD3E	916	broad.mit.edu	37	chr11	118178144	118178144	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggtcaggaaaaggagtttCtgccatctacccctttgact	10	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118178144	A	A	118178144	1	1	91	0	1	0	0	0	0	0	0	0	3041	928	32	3		3	CD3E	11	118178144	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	465394	118178144	16828372	680	92674											
IFT46	56912	broad.mit.edu	37	chr11	118416217	118416219	+	Intron	DEL	GAA	-	-													atgtctagaatggctgaaacGaagaagaacttccaggaaca							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118416219	-	-	118416217	6	5	91	0	1	1	0	1	0	0	0	0	7630	1073	37	0		0	IFT46	11	118416217	Intron	DEL	GAA	TCGA-17-Z062-01A-01W-0747-08	238073	118416217	16590299	681	92675											
HYOU1	10525	broad.mit.edu	37	chr11	118926013	118926013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcttccccaggaggtgCtggaagtaacgtagcgtagc	14	11	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118926013	A	A	118926013	3	1	91	1	0	0	0	0	1	0	0	0	7540	796	28	3	2784	3	HYOU1	11	118926013	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	509796	118926013	16080503	682	92676											
PVRL1	5818	broad.mit.edu	37	chr11	119535730	119535732	+	In_Frame_Del	DEL	CTT	-	-													cttccacccagtgggccggcCttcttctcgtcgtctgagtc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119535732	-	-	119535730	7	5	91	1	0	1	0	1	0	0	0	0	12947	680	24	0	662	0	PVRL1	11	119535730	In_Frame_Del	DEL	CTT	TCGA-17-Z062-01A-01W-0747-08	609717	119535730	15470786	683	92677											
TRIM29	23650	broad.mit.edu	37	chr11	120007970	120007970	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcctcctccactgtcacgGtgctatgattcttgtgctcc	9	14	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120007970	A	A	120007970	3	1	91	1	0	0	0	0	1	0	0	0	16627	1261	44	4	1032	4	TRIM29	11	120007970	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	472240	120007970	14998546	684	92678											
OR6X1	390260	broad.mit.edu	37	chr11	123624624	123624624	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgggatcacaaggatGgttgctatgacgcccaggag	14	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123624624	T	T	123624624	2	4	91	1	0	0	0	0	0	0	0	1	11306	1335	47	2		2	OR6X1	11	123624624	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3616654	123624624	11381892	685	92679											
OR6M1	390261	broad.mit.edu	37	chr11	123676203	123676203	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattcctcaagctgtagatAaaagggttcaggagaggggt	13	6	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123676203	G	G	123676203	2	3	91	1	0	0	0	0	0	0	0	1	11299	359	13	5		5	OR6M1	11	123676203	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	51579	123676203	11330313	686	92680											
OR10G8	219869	broad.mit.edu	37	chr11	123900769	123900769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcttctggccaccagcaCttggctcagtggctctctgc	9	15	4	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123900769	A	A	123900769	3	1	91	1	0	0	0	0	1	0	0	0	10997	565	20	3	442	3	OR10G8	11	123900769	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	224566	123900769	11105747	687	92681											
TEAD4	7004	broad.mit.edu	37	chr12	3129934	3129934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagcagcagcaggacccgGacacggtaggtcctggcctc	15	13	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3129934	T	T	3129934	3	4	91	1	0	0	0	0	1	0	0	0	15863	1174	41	3	744	3	TEAD4	12	3129934	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08		3129934	130721961	688	92682											
ANO2	57101	broad.mit.edu	37	chr12	6031944	6031944	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgagggctcagccggcGtggggagccagggagcaggg	21	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6031944	A	A	6031944	3	1	91	1	0	0	0	0	1	0	0	0	697	1145	40	4	3059	4	ANO2	12	6031944	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2902010	6031944	127819951	689	92683											
PEX5	5830	broad.mit.edu	37	chr12	7361324	7361324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctaagtcccagtaggaggGtgaccttggttttggaagtt	13	7	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7361324	T	T	7361324	1	4	91	0	1	0	0	0	0	0	0	0	11843	1276	44	3		3	PEX5	12	7361324	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1329380	7361324	126490571	690	92684											
CD163L1	283316	broad.mit.edu	37	chr12	7522158	7522158	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacacaccacttccgcctcGgccaggtcccaggagtcatc	9	17	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7522158	T	T	7522158	2	4	91	1	0	0	0	0	0	0	0	1	2998	1103	39	1		1	CD163L1	12	7522158	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	160834	7522158	126329737	691	92685											
CLEC6A	93978	broad.mit.edu	37	chr12	8612375	8612375	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagattggtgtattctaTtgtgcatttgtgtgtgtatg	11	4	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8612375	C	C	8612375	1	2	91	0	1	0	0	0	0	0	0	0	3552	1508	52	5		5	CLEC6A	12	8612375	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1090217	8612375	125239520	692	92686											
OLR1	4973	broad.mit.edu	37	chr12	10319681	10319681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagctgctgaaaaatgaccCagatttactcagaagttaca	7	8	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10319681	A	A	10319681	1	1	91	0	1	0	0	0	0	0	0	0	10957	609	21	2		2	OLR1	12	10319681	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1707306	10319681	123532214	693	92687											
TMTC1	83857	broad.mit.edu	37	chr12	29709922	29709922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgagcgcacttgcatggCgtggatacaacctgaaaagt	12	8	0	2	rs141015646	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29709922	A	A	29709922	3	1	91	1	0	0	0	0	1	0	0	0	16383	768	27	3	1140	3	TMTC1	12	29709922	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	19390241	29709922	104141973	694	92688											
DDX11	1663	broad.mit.edu	37	chr12	31255978	31255978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaccccagtgtcacagaGggtgacaggagagtaggcag	16	8	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31255978	T	T	31255978	1	4	91	0	1	0	0	0	0	0	0	0	4376	1015	35	2		2	DDX11	12	31255978	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1546056	31255978	102595917	695	92689											
KIF21A	55605	broad.mit.edu	37	chr12	39734124	39734124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcttttcatattcagacCtaactttttttgctttttct	3	8	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39734124	A	A	39734124	3	1	91	1	0	0	0	0	1	0	0	0	8358	681	24	2	2963	2	KIF21A	12	39734124	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8478146	39734124	94117771	696	92690											
PRICKLE1	144165	broad.mit.edu	37	chr12	42853951	42853951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtatgcttggatctccCgggcacttttattctgtata	10	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42853951	A	A	42853951	3	1	91	1	0	0	0	0	1	0	0	0	12592	652	23	1	343	1	PRICKLE1	12	42853951	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3119827	42853951	90997944	697	92691											
ADAMTS20	80070	broad.mit.edu	37	chr12	43769219	43769219	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgagatcaattcttattttGctgaaaacagtgtatccagc	8	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43769219	C	C	43769219	3	2	91	1	0	0	0	0	1	0	0	0	266	1310	46	4	338	4	ADAMTS20	12	43769219	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	915268	43769219	90082676	698	92692											
NELL2	4753	broad.mit.edu	37	chr12	45173531	45173531	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagggcttttctactaccCtttcataaattctgcaaaaa	6	9	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45173531	T	T	45173531	3	4	91	1	0	0	0	0	1	0	0	0	10429	681	24	4	1993	4	NELL2	12	45173531	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1404312	45173531	88678364	699	92693											
SLC38A4	55089	broad.mit.edu	37	chr12	47172453	47172453	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaactctcagagttgttgGgtaacattaccacatgcatt	8	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47172453	C	C	47172453	3	2	91	1	0	0	0	0	1	0	0	0	14720	1232	43	4	847	4	SLC38A4	12	47172453	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1998922	47172453	86679442	700	92694											
DDX23	9416	broad.mit.edu	37	chr12	49226183	49226183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattctccaccctgtttccCctggctcagctgccctcata	5	17	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49226183	A	A	49226183	1	1	91	0	1	0	0	0	0	0	0	0	4383	638	22	2		2	DDX23	12	49226183	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2053730	49226183	84625712	701	92695											
NCKAP5L	57701	broad.mit.edu	37	chr12	50190474	50190474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtagcaccgaagcctggcCtgtgggcctctggggtaccc	15	13	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50190474	A	A	50190474	3	1	91	1	0	0	0	0	1	0	0	0	10319	681	24	2	2859	2	NCKAP5L	12	50190474	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	964291	50190474	83661421	702	92696											
NCKAP5L	57701	broad.mit.edu	37	chr12	50197683	50197683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggctggcactgctgccCctaccacgccccatgccgca	9	20	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50197683	A	A	50197683	1	1	91	0	1	0	0	0	0	0	0	0	10319	638	22	2		2	NCKAP5L	12	50197683	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7209	50197683	83654212	703	92697											
LARP4	113251	broad.mit.edu	37	chr12	50867819	50867819	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatctaatagaagattccTctgttcagaaggatggtctc	10	7	4	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50867819	C	C	50867819	3	2	91	1	0	0	0	0	1	0	0	0	8702	1551	54	5	1767	5	LARP4	12	50867819	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	670136	50867819	82984076	704	92698											
LARP4	113251	broad.mit.edu	37	chr12	50867905	50867905	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgagggcaagtactgcttcAccatgtaataataacataaa	7	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50867905	G	G	50867905	2	3	91	1	0	0	0	0	0	0	0	1	8702	146	6	5		5	LARP4	12	50867905	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	86	50867905	82983990	705	92699											
SCN8A	6334	broad.mit.edu	37	chr12	52159593	52159593	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttgccgtggtggggatgCaactctttggaaaaagctac	12	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52159593	G	G	52159593	3	3	91	1	0	0	0	0	1	0	0	0	14037	711	25	4	2741	4	SCN8A	12	52159593	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1291688	52159593	81692302	706	92700											
SCN8A	6334	broad.mit.edu	37	chr12	52200939	52200939	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagccaatcacaaccacacTgcgtcgcaagcaggaggagg	12	13	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52200939	A	A	52200939	3	1	91	1	0	0	0	0	1	0	0	0	14037	1580	55	5	5771	5	SCN8A	12	52200939	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	41346	52200939	81650956	707	92701											
KRT4	3851	broad.mit.edu	37	chr12	53201984	53201984	+	Intron	DEL	C	-	-													cccagcaacaagctcagggtCttctggcctgatgctttatc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53201984	-	-	53201984	6	5	91	0	1	1	0	1	0	0	0	0	8548	928	32	0		0	KRT4	12	53201984	Intron	DEL	C	TCGA-17-Z062-01A-01W-0747-08	1001045	53201984	80649911	708	92702											
CALCOCO1	57658	broad.mit.edu	37	chr12	54109682	54109682	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgttaacttcagccacttcCaggcggctgcggtgtagttc	11	13	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54109682	A	A	54109682	2	1	91	1	0	0	0	0	0	0	0	1	2603	581	21	2		2	CALCOCO1	12	54109682	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	907698	54109682	79742213	709	92703											
OR6C68	403284	broad.mit.edu	37	chr12	55886576	55886576	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatcatgagcaacaaagtgTgcaaaacaatggttatttgt	8	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55886576	A	A	55886576	3	1	91	1	0	0	0	0	1	0	0	0	11290	1696	59	5	432	5	OR6C68	12	55886576	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	1776894	55886576	77965319	710	92704											
COQ10A	93058	broad.mit.edu	37	chr12	56661501	56661503	+	Intron	DEL	TCT	-	-													gaccttcgtctgggatgcacTcttcttctccttcacctaca							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56661503	-	-	56661501	6	5	91	0	1	1	0	1	0	0	0	0	3775	1566	54	0		0	COQ10A	12	56661501	Intron	DEL	TCT	TCGA-17-Z062-01A-01W-0747-08	774925	56661501	77190394	711	92705											
GEFT	115557	broad.mit.edu	37	chr12	58008761	58008761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcttaggattttctcaaGtattacaatagagctgggat	9	6	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58008761	T	T	58008761	3	4	91	1	0	0	0	0	1	0	0	0	6392	1020	36	3	1181	3	GEFT	12	58008761	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1347260	58008761	75843134	712	92706											
OS9	10956	broad.mit.edu	37	chr12	58114582	58114582	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaggtgccgggagctgaaGaggcccagaaggaacgccag	16	11	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58114582	T	T	58114582	4	4	91	1	0	0	0	0	0	1	0	0	11366	943	33	3	1952	3	OS9	12	58114582	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	105821	58114582	75737313	713	92707											
FAM19A2	338811	broad.mit.edu	37	chr12	62273424	62273425	+	Intron	INS	-	A	A													agtttgcctccttcatcgacINSaaggtacggttcctggagca							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62273425	A	A	62273424	6	5	91	0	1	1	1	0	0	0	0	0	5579	493	17	0		0	FAM19A2	12	62273424	Intron	INS	-	TCGA-17-Z062-01A-01W-0747-08	4158842	62273424	71578471	714	92708											
DPY19L2	283417	broad.mit.edu	37	chr12	64061906	64061906	+	Frame_Shift_Del	DEL	C	-	-													caccttttcccggagctgcgCcagggaattacggacgaact							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64061906	-	-	64061906	7	5	91	1	0	1	0	1	0	0	0	0	4781	739	26	0	2096	0	DPY19L2	12	64061906	Frame_Shift_Del	DEL	C	TCGA-17-Z062-01A-01W-0747-08	1788482	64061906	69789989	715	92709											
SRGAP1	57522	broad.mit.edu	37	chr12	64488712	64488712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttccatccctttacccagGactcaggacaggttattccc	7	14	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64488712	T	T	64488712	3	4	91	1	0	0	0	0	1	0	0	0	15263	1188	41	3	1590	3	SRGAP1	12	64488712	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	426806	64488712	69363183	716	92710											
MSRB3	253827	broad.mit.edu	37	chr12	65762711	65762711	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccaaccacacccccccCccccatgaaataattgttct	2	21	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65762711	T	T	65762711	1	4	91	0	1	0	0	0	0	0	0	0	9983	638	22	4		4	MSRB3	12	65762711	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1273999	65762711	68089184	717	92711											
TMBIM4	51643	broad.mit.edu	37	chr12	66531693	66531693	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttactttaatccttttttctCattaaattttttttgttgtt	2	5	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66531693	G	G	66531693	1	3	91	0	1	0	0	0	0	0	0	0	16105	841	29	4		4	TMBIM4	12	66531693	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	768982	66531693	67320202	718	92712											
KCNMB4	27345	broad.mit.edu	37	chr12	70793936	70793936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctataaaaaaagactgtAtctcaatgttccataaaata	3	6	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70793936	G	G	70793936	1	3	91	0	1	0	0	0	0	0	0	0	8147	464	16	5		5	KCNMB4	12	70793936	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	4262243	70793936	63057959	719	92713											
PTPRB	5787	broad.mit.edu	37	chr12	70953392	70953393	+	Missense_Mutation	DNP	GG	TC	TC													cagcaaatgacataagactgGgaggacttggagctgaatgt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	70953393	TC	TC	70953392	3	4	91	1	0	0	0	0	1	0	0	0	12904	1232	43	2	2270	2	PTPRB	12	70953392	Missense_Mutation	DNP	GG	TCGA-17-Z062-01A-01W-0747-08	159456	70953392	62898503	720	92714											
PTPRB	5787	broad.mit.edu	37	chr12	70963390	70963390	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatagctgagcccgttcActgtcccattttggagaacc	10	11	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70963390	G	G	70963390	1	3	91	0	1	0	0	0	0	0	0	0	12904	174	6	5		5	PTPRB	12	70963390	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	9998	70963390	62888505	721	92715											
PTPRB	5787	broad.mit.edu	37	chr12	70970274	70970274	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaacattctctgacagaCttggcaatgacaagggactg	11	8	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70970274	T	T	70970274	2	4	91	1	0	0	0	0	0	0	0	1	12904	564	20	4		4	PTPRB	12	70970274	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6884	70970274	62881621	722	92716											
LGR5	8549	broad.mit.edu	37	chr12	71977686	71977686	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgacatggtgcctggtgggaGaatggggttggttgccatgt	18	6	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71977686	T	T	71977686	3	4	91	1	0	0	0	0	1	0	0	0	8829	933	33	3	1966	3	LGR5	12	71977686	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1007412	71977686	61874209	723	92717											
ZFC3H1	196441	broad.mit.edu	37	chr12	72004520	72004520	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtaacttctgtaaggctctCtgatataaacggtggacctg	11	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72004520	A	A	72004520	3	1	91	1	0	0	0	0	1	0	0	0	17759	912	32	3	190	3	ZFC3H1	12	72004520	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	26834	72004520	61847375	724	92718											
OSBPL8	114882	broad.mit.edu	37	chr12	76783668	76783668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcagacagatatgtaaaCaagccagctaatgttgaaaa	7	6	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76783668	A	A	76783668	1	1	91	0	1	0	0	0	0	0	0	0	11377	493	17	3		3	OSBPL8	12	76783668	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4779148	76783668	57068227	725	92719											
ZDHHC17	23390	broad.mit.edu	37	chr12	77220565	77220565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgaatagtactgatacatAgcatgcaaatttgagtgaat	8	5	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77220565	G	G	77220565	1	3	91	0	1	0	0	0	0	0	0	0	17733	435	15	5		5	ZDHHC17	12	77220565	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	436897	77220565	56631330	726	92720											
NAV3	89795	broad.mit.edu	37	chr12	78400688	78400688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggaagcaaaaatctcaGcaataaaaagtctttgctac	7	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78400688	T	T	78400688	3	4	91	1	0	0	0	0	1	0	0	0	10279	971	34	3	1400	3	NAV3	12	78400688	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1180123	78400688	55451207	727	92721											
NAV3	89795	broad.mit.edu	37	chr12	78515929	78515929	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaccctcagacttaactaCagatgttataagcttaagtc	5	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78515929	T	T	78515929	3	4	91	1	0	0	0	0	1	0	0	0	10279	478	17	4	4021	4	NAV3	12	78515929	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	115241	78515929	55335966	728	92722											
MYF6	4618	broad.mit.edu	37	chr12	81101521	81101521	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgatggacctttttgaaaCtggctcctatttcttctact	7	9	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81101521	G	G	81101521	3	3	91	1	0	0	0	0	1	0	0	0	10122	565	20	4	25	4	MYF6	12	81101521	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2585592	81101521	52750374	729	92723											
PPFIA2	8499	broad.mit.edu	37	chr12	81693091	81693091	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttacctctagccatgCgaccacagttggcccatccc	6	17	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81693091	G	G	81693091	3	3	91	1	0	0	0	0	1	0	0	0	12406	768	27	4	1100	4	PPFIA2	12	81693091	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	591570	81693091	52158804	730	92724											
ATP2B1	490	broad.mit.edu	37	chr12	90036108	90036109	+	Frame_Shift_Del	DEL	AA	-	-													acactgcttctcttctttctAaatctgcagggtttccactt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90036109	-	-	90036108	7	5	91	1	0	1	0	1	0	0	0	0	1143	372	13	0	3663	0	ATP2B1	12	90036108	Frame_Shift_Del	DEL	AA	TCGA-17-Z062-01A-01W-0747-08	8343017	90036108	43815787	731	92725											
CCDC38	120935	broad.mit.edu	37	chr12	96288796	96288796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttggaaggatgatatttGctttactttttgatgcctgt	9	4	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96288796	T	T	96288796	3	4	91	1	0	0	0	0	1	0	0	0	2837	1319	46	3	984	3	CCDC38	12	96288796	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	6252688	96288796	37563099	732	92726											
APAF1	317	broad.mit.edu	37	chr12	99059235	99059235	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcttttgataacatgcagcAgaaattgtttcttagtaatg	9	5	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99059235	T	T	99059235	1	4	91	0	1	0	0	0	0	0	0	0	757	203	7	5		5	APAF1	12	99059235	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2770439	99059235	34792660	733	92727											
ANO4	121601	broad.mit.edu	37	chr12	101510293	101510293	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgttcctgattcaacatGcccagggctttccagcgtat	8	12	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101510293	A	A	101510293	1	1	91	0	1	0	0	0	0	0	0	0	699	1334	46	4		4	ANO4	12	101510293	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2451058	101510293	32341602	734	92728											
BTBD11	121551	broad.mit.edu	37	chr12	108011021	108011021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccctggcccttgaagtgCctgtgactatatttttgctt	9	11	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108011021	A	A	108011021	1	1	91	0	1	0	0	0	0	0	0	0	1548	754	26	3		3	BTBD11	12	108011021	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6500728	108011021	25840874	735	92729											
ACACB	32	broad.mit.edu	37	chr12	109650548	109650548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggccacggaccagtgctcGtttgggtactggtttgggga	16	9	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109650548	A	A	109650548	1	1	91	0	1	0	0	0	0	0	0	0	107	1160	40	4		4	ACACB	12	109650548	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1639527	109650548	24201347	736	92730											
CCDC63	160762	broad.mit.edu	37	chr12	111336724	111336724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagcaggtgggaattggGgtctgccaccaggataaact	14	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111336724	T	T	111336724	1	4	91	0	1	0	0	0	0	0	0	0	2862	1247	43	2		2	CCDC63	12	111336724	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1686176	111336724	22515171	737	92731											
TPCN1	53373	broad.mit.edu	37	chr12	113710388	113710388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgttcatttgcatgtatttGtccagtccttttgacaccag	8	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113710388	T	T	113710388	1	4	91	0	1	0	0	0	0	0	0	0	16519	1392	48	3		3	TPCN1	12	113710388	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2373664	113710388	20141507	738	92732											
LHX5	64211	broad.mit.edu	37	chr12	113909175	113909175	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttgccctcgcgcgagaaGcacttctccgagaggttggt	13	12	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113909175	A	A	113909175	2	1	91	1	0	0	0	0	0	0	0	1	8846	963	34	4		4	LHX5	12	113909175	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	198787	113909175	19942720	739	92733											
TBX3	6926	broad.mit.edu	37	chr12	115117614	115117614	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctgggtacgtttcgctcCacagatgttatcttctggag	10	12	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115117614	T	T	115117614	1	4	91	0	1	0	0	0	0	0	0	0	15781	609	21	4		4	TBX3	12	115117614	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1208439	115117614	18734281	740	92734											
NOS1	4842	broad.mit.edu	37	chr12	117657859	117657859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtaggaaaagggacctgGgaagtcagcctgtcactcac	13	9	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117657859	T	T	117657859	1	4	91	0	1	0	0	0	0	0	0	0	10636	1247	43	2		2	NOS1	12	117657859	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2540245	117657859	16194036	741	92735											
CCDC60	160777	broad.mit.edu	37	chr12	119943141	119943141	+	Intron	SNP	C	A	A													tgagatctgactcatctaccCtgaccctttgcctttaagcc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119943141	A	A	119943141	1	1	91	0	1	0	0	0	0	0	0	0	2859	696	24	2		2	CCDC60	12	119943141	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2285282	119943141	13908754	742	92736	415	2									
CCDC60	160777	broad.mit.edu	37	chr12	119943143	119943143	+	Intron	SNP	G	A	A													agatctgactcatctaccctGaccctttgcctttaagccag							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119943143	A	A	119943143	1	1	91	0	1	0	0	0	0	0	0	0	2859	1305	45	4		4	CCDC60	12	119943143	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2	119943143	13908752	743	92737	415	2									
HNF1A	6927	broad.mit.edu	37	chr12	121434056	121434056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggcaggacactgcttcCctctccaggtgtgcgctatg	12	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121434056	A	A	121434056	1	1	91	0	1	0	0	0	0	0	0	0	7318	638	22	2		2	HNF1A	12	121434056	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1490913	121434056	12417839	744	92738											
HNF1A	6927	broad.mit.edu	37	chr12	121434285	121434285	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggagattctggagcagtcCctagggaggccctgtgggga	18	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121434285	G	G	121434285	1	3	91	0	1	0	0	0	0	0	0	0	7318	638	22	4		4	HNF1A	12	121434285	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	229	121434285	12417610	745	92739											
OASL	8638	broad.mit.edu	37	chr12	121461898	121461898	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtcccatctgtacccttcTgccacgttgagggtggggtc	12	12	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121461898	A	A	121461898	2	1	91	1	0	0	0	0	0	0	0	1	10897	1588	55	5		5	OASL	12	121461898	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	27613	121461898	12389997	746	92740											
P2RX7	5027	broad.mit.edu	37	chr12	121592673	121592673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaaggggatagcagagGtgaaagaggagatcgtggag	20	2	0	5			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121592673	T	T	121592673	3	4	91	1	0	0	0	0	1	0	0	0	11439	1261	44	3	217	3	P2RX7	12	121592673	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	130775	121592673	12259222	747	92741											
KNTC1	9735	broad.mit.edu	37	chr12	123014587	123014587	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaagacagtggttcctgActcaggaagacagtctcaga	12	8	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123014587	T	T	123014587	1	4	91	0	1	0	0	0	0	0	0	0	8499	290	10	5		5	KNTC1	12	123014587	5'UTR	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1421914	123014587	10837308	748	92742											
DNAH10	196385	broad.mit.edu	37	chr12	124325804	124325804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgctggatggagcaccGctggctggtctttgattcca	13	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124325804	T	T	124325804	1	4	91	0	1	0	0	0	0	0	0	0	4638	1102	38	3		3	DNAH10	12	124325804	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1311217	124325804	9526091	749	92743											
PSPC1	55269	broad.mit.edu	37	chr13	20346466	20346466	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaactctacaaaaccttttCctgtagctctaccgcgatca	4	14	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20346466	T	T	20346466	3	4	91	1	0	0	0	0	1	0	0	0	12822	855	30	4	1013	4	PSPC1	13	20346466	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08		20346466	94823412	750	92744											
SPATA13	221178	broad.mit.edu	37	chr13	24864909	24864909	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaagcctgccgcctgctGcagcagatgattgacatcgc	11	12	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24864909	T	T	24864909	2	4	91	1	0	0	0	0	0	0	0	1	15116	1306	46	3		3	SPATA13	13	24864909	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4518443	24864909	90304969	751	92745											
C13orf33	84935	broad.mit.edu	37	chr13	31495730	31495730	+	Frame_Shift_Del	DEL	C	-	-													gaggcagtgaagaatttcttCcccccaggaaatgaagtggt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31495730	-	-	31495730	7	5	91	1	0	1	0	1	0	0	0	0	1740	854	30	0	548	0	C13orf33	13	31495730	Frame_Shift_Del	DEL	C	TCGA-17-Z062-01A-01W-0747-08	6630821	31495730	83674148	752	92746											
RFC3	5983	broad.mit.edu	37	chr13	34400124	34400124	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaagcctgatctctgGgctcatgggagtttatagtc	14	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34400124	C	C	34400124	1	2	91	0	1	0	0	0	0	0	0	0	13354	1247	43	4		4	RFC3	13	34400124	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2904394	34400124	80769754	753	92747											
NAA16	79612	broad.mit.edu	37	chr13	41941683	41941683	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattagaagatatactcagaAgacatgccttttatttcaag	7	6	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41941683	C	C	41941683	2	2	91	1	0	0	0	0	0	0	0	1	10213	64	3	5		5	NAA16	13	41941683	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	7541559	41941683	73228195	754	92748											
TNFSF11	8600	broad.mit.edu	37	chr13	43180567	43180567	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttctccctaacctcataGaattgtgaagacgtccttct	5	11	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43180567	C	C	43180567	1	2	91	0	1	0	0	0	0	0	0	0	16425	957	33	4		4	TNFSF11	13	43180567	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1238884	43180567	71989311	755	92749											
CCDC70	83446	broad.mit.edu	37	chr13	52439952	52439953	+	Missense_Mutation	DNP	CC	AA	AA													aatgccttatgggaaagagaCcggaaccttcttcaggagga							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52439953	AA	AA	52439952	3	1	91	1	0	0	0	0	1	0	0	0	2871	506	18	3	440	3	CCDC70	13	52439952	Missense_Mutation	DNP	CC	TCGA-17-Z062-01A-01W-0747-08	9259385	52439952	62729926	756	92750											
ATP7B	540	broad.mit.edu	37	chr13	52544577	52544577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtattctgaagggagaataCgaggtctatacgcagcattc	12	7	2	2	rs151202111	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52544577	A	A	52544577	1	1	91	0	1	0	0	0	0	0	0	0	1195	551	19	3		3	ATP7B	13	52544577	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	104625	52544577	62625301	757	92751											
LECT1	11061	broad.mit.edu	37	chr13	53307311	53307311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaattagaaaagtcccgcaGgcttgcctggttaaattctc	9	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53307311	T	T	53307311	1	4	91	0	1	0	0	0	0	0	0	0	8784	1015	35	2		2	LECT1	13	53307311	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	762734	53307311	61862567	758	92752											
PCDH9	5101	broad.mit.edu	37	chr13	67477676	67477676	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgaatgtggaaacccGtggagctgggacatttctga	12	9	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67477676	A	A	67477676	3	1	91	1	0	0	0	0	1	0	0	0	11612	1145	40	4	627	4	PCDH9	13	67477676	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	14170365	67477676	47692202	759	92753											
DACH1	1602	broad.mit.edu	37	chr13	72278547	72278547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgttttaaacaagttaaGggcaagcttcttgcaaagag	9	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72278547	T	T	72278547	1	4	91	0	1	0	0	0	0	0	0	0	4253	1015	35	2		2	DACH1	13	72278547	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4800871	72278547	42891331	760	92754											
TGDS	23483	broad.mit.edu	37	chr13	95230903	95230903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattctatggcctttaagaCtttatgatatttaagaaagt	6	5	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95230903	A	A	95230903	1	1	91	0	1	0	0	0	0	0	0	0	15937	580	20	3		3	TGDS	13	95230903	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	22952356	95230903	19938975	761	92755											
TMTC4	84899	broad.mit.edu	37	chr13	101316583	101316583	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccaggggcgtttctgctTggaggtcctgcagggtcaca	14	13	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101316583	G	G	101316583	3	3	91	1	0	0	0	0	1	0	0	0	16386	1812	63	5	2119	5	TMTC4	13	101316583	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	6085680	101316583	13853295	762	92756											
ABHD13	84945	broad.mit.edu	37	chr13	108882324	108882327	+	Frame_Shift_Del	DEL	TCTC	-	-													atttttgtcctacagaaaaaTctctcagtgtagaatgcctt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108882327	-	-	108882324	7	5	91	1	0	1	0	1	0	0	0	0	78	1435	50	0	760	0	ABHD13	13	108882324	Frame_Shift_Del	DEL	TCTC	TCGA-17-Z062-01A-01W-0747-08	7565741	108882324	6287554	763	92757											
CUL4A	8451	broad.mit.edu	37	chr13	113873232	113873232	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatctgttgttcatactgaaGaattgatgtagcccttttgt	8	6	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113873232	A	A	113873232	1	1	91	0	1	0	0	0	0	0	0	0	4090	957	33	4		4	CUL4A	13	113873232	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4990908	113873232	1296646	764	92758											
OR4Q3	441669	broad.mit.edu	37	chr14	20216386	20216386	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggcctttctgcagcttctCtgtggataagatattctcct	9	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20216386	G	G	20216386	3	3	91	1	0	0	0	0	1	0	0	0	11175	913	32	4	802	4	OR4Q3	14	20216386	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08		20216386	87133154	765	92759											
OR4M1	441670	broad.mit.edu	37	chr14	20249408	20249408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcaccaaatatattttGtgtgaagagaagtgaaagat	11	3	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20249408	T	T	20249408	3	4	91	1	0	0	0	0	1	0	0	0	11169	1368	48	3	929	3	OR4M1	14	20249408	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	33022	20249408	87100132	766	92760											
OR4N5	390437	broad.mit.edu	37	chr14	20611943	20611943	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaattcattcttcttggtCtgacccagtctcaagatgct	7	11	5	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20611943	A	A	20611943	3	1	91	1	0	0	0	0	1	0	0	0	11173	912	32	3	51	3	OR4N5	14	20611943	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	362535	20611943	86737597	767	92761											
CHD8	57680	broad.mit.edu	37	chr14	21859724	21859724	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccagcaaagtaccatcCaccttattgatgacagggat	7	13	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21859724	A	A	21859724	2	1	91	1	0	0	0	0	0	0	0	1	3362	581	21	2		2	CHD8	14	21859724	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1247781	21859724	85489816	768	92762											
HECTD1	25831	broad.mit.edu	37	chr14	31576778	31576778	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaaatattcttacgtgacGagattcatcatctggaaaat	8	6	4	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31576778	C	C	31576778	3	2	91	1	0	0	0	0	1	0	0	0	7106	1058	37	4	1247	4	HECTD1	14	31576778	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	9717054	31576778	75772762	769	92763											
HECTD1	25831	broad.mit.edu	37	chr14	31597204	31597206	+	In_Frame_Del	DEL	GAG	-	-													gaaactctgagcacccataaGaggagaagctaaagacaaaa							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31597206	-	-	31597204	7	5	91	1	0	1	0	1	0	0	0	0	7106	942	33	0	3136	0	HECTD1	14	31597204	In_Frame_Del	DEL	GAG	TCGA-17-Z062-01A-01W-0747-08	20426	31597204	75752336	770	92764											
SYT16	83851	broad.mit.edu	37	chr14	62536588	62536588	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggccaatggtaagagtGcatccgaattattcaccctc	10	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62536588	A	A	62536588	1	1	91	0	1	0	0	0	0	0	0	0	15591	1334	46	4		4	SYT16	14	62536588	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	30939384	62536588	44812952	771	92765											
SFRS5	6430	broad.mit.edu	37	chr14	70237106	70237106	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acatcttctctttcagtagtCttgttttttttatatcatgt	4	7	5	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70237106	G	G	70237106	1	3	91	0	1	0	0	0	0	0	0	0	14293	928	32	4		4	SFRS5	14	70237106	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7700518	70237106	37112434	772	92766											
SMOC1	64093	broad.mit.edu	37	chr14	70442641	70442641	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgatggtggtgatgaaccTttttctagatcagggaggat	14	4	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70442641	C	C	70442641	1	2	91	0	1	0	0	0	0	0	0	0	14915	1624	56	5		5	SMOC1	14	70442641	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	205535	70442641	36906899	773	92767											
SIPA1L1	26037	broad.mit.edu	37	chr14	72190356	72190356	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacatgtctttgccctgcttCtcctcagtaccatgagctcc	6	16	3	1	rs79802562	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72190356	T	T	72190356	1	4	91	0	1	0	0	0	0	0	0	0	14442	928	32	4		4	SIPA1L1	14	72190356	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1747715	72190356	35159184	774	92768											
DCAF4	26094	broad.mit.edu	37	chr14	73418670	73418670	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagagagaagtatggggccGctgcagaggcactgtgggag	18	6	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73418670	A	A	73418670	1	1	91	0	1	0	0	0	0	0	0	0	4303	1102	38	4		4	DCAF4	14	73418670	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1228314	73418670	33930870	775	92769											
MLH3	27030	broad.mit.edu	37	chr14	75498773	75498773	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcatggtggtactgaccaTaagagtctcctttgttcctc	8	11	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75498773	A	A	75498773	3	1	91	1	0	0	0	0	1	0	0	0	9711	1403	49	5	560	5	MLH3	14	75498773	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2080103	75498773	31850767	776	92770											
ESRRB	2103	broad.mit.edu	37	chr14	76905848	76905848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggcctggccctgggcaCccacgccaacggtctggact	12	16	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76905848	A	A	76905848	3	1	91	1	0	0	0	0	1	0	0	0	5303	507	18	3	154	3	ESRRB	14	76905848	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1407075	76905848	30443692	777	92771											
ISM2	145501	broad.mit.edu	37	chr14	77948824	77948824	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctgaaggatagtcctcgtCttcctccttttcctccccct	5	17	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77948824	G	G	77948824	3	3	91	1	0	0	0	0	1	0	0	0	7931	913	32	4	917	4	ISM2	14	77948824	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1042976	77948824	29400716	778	92772											
STON2	85439	broad.mit.edu	37	chr14	81744495	81744495	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcatcaatttggagtTgtttgagtttttcaacagca	10	6	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81744495	G	G	81744495	3	3	91	1	0	0	0	0	1	0	0	0	15436	1812	63	5	1563	5	STON2	14	81744495	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	3795671	81744495	25605045	779	92773											
FOXN3	1112	broad.mit.edu	37	chr14	89756743	89756743	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggaaattgctggtactctCcccattacctggatttgaat	9	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89756743	A	A	89756743	1	1	91	0	1	0	0	0	0	0	0	0	6081	870	30	3		3	FOXN3	14	89756743	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8012248	89756743	17592797	780	92774											
KIAA1409	57578	broad.mit.edu	37	chr14	93943841	93943841	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattaaagcttaaaatgtaAagttagcctattttgttaat	5	4	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93943841	T	T	93943841	1	4	91	0	1	0	0	0	0	0	0	0	8300	29	1	5		5	KIAA1409	14	93943841	5'Flank	SNP	A	TCGA-17-Z062-01A-01W-0747-08	4187098	93943841	13405699	781	92775											
SERPINA1	5265	broad.mit.edu	37	chr14	94849303	94849303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagtgtcagccttggtcCccagggagagcattgcaaag	14	10	1	2	rs28931568		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94849303	A	A	94849303	3	1	91	1	0	0	0	0	1	0	0	0	14199	623	22	2	1000	2	SERPINA1	14	94849303	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	905462	94849303	12500237	782	92776											
AK7	122481	broad.mit.edu	37	chr14	96890026	96890026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggttcaggtcgccgagctGccccctacttcccagacagc	10	17	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96890026	T	T	96890026	1	4	91	0	1	0	0	0	0	0	0	0	444	1334	46	3		3	AK7	14	96890026	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2040723	96890026	10459514	783	92777											
C15orf2	23742	broad.mit.edu	37	chr15	24922505	24922505	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcctctcacttctgacccCccaacacctcctagctccac	4	22	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24922505	T	T	24922505	2	4	91	1	0	0	0	0	0	0	0	1	1797	610	22	4		4	C15orf2	15	24922505	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08		24922505	77608887	784	92778											
GABRA5	2558	broad.mit.edu	37	chr15	27185030	27185030	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttggatgcagcaagcagAgactctaggggactgatgtg	14	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27185030	C	C	27185030	1	2	91	0	1	0	0	0	0	0	0	0	6224	319	11	5		5	GABRA5	15	27185030	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2262525	27185030	75346362	785	92779											
HERC2	8924	broad.mit.edu	37	chr15	28375308	28375308	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcactgagcccctacctaCcatcctctgtgcagcacaca	7	18	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28375308	T	T	28375308	5	4	91	1	0	0	0	0	0	0	1	0	7125	521	18	4	1745	4	HERC2	15	28375308	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1190278	28375308	74156084	786	92780											
HERC2	8924	broad.mit.edu	37	chr15	28463580	28463580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacatgaacacccagacaCaagcgtgcggcccccagcgc	9	19	0	2	rs60214216		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28463580	A	A	28463580	1	1	91	0	1	0	0	0	0	0	0	0	7125	493	17	3		3	HERC2	15	28463580	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	88272	28463580	74067812	787	92781											
MTMR15	22909	broad.mit.edu	37	chr15	31198066	31198066	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgctctttgatgagcaggaGaagggaattgtaactaaatt	11	4	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31198066	T	T	31198066	3	4	91	1	0	0	0	0	1	0	0	0	10037	933	33	3	1202	3	MTMR15	15	31198066	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2734486	31198066	71333326	788	92782											
RYR3	6263	broad.mit.edu	37	chr15	33855076	33855076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccagtcacaagcgagaCatagaaggcatgggagttcc	12	10	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33855076	A	A	33855076	3	1	91	1	0	0	0	0	1	0	0	0	13881	477	17	3	1053	3	RYR3	15	33855076	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2657010	33855076	68676316	789	92783											
FSIP1	161835	broad.mit.edu	37	chr15	40034009	40034009	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatttaaatataccttTattgagtttctgcatctgca	4	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40034009	A	A	40034009	4	1	91	1	0	0	0	0	0	1	0	0	6134	1763	61	5	1121	5	FSIP1	15	40034009	Nonsense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	6178933	40034009	62497383	790	92784											
VPS39	23339	broad.mit.edu	37	chr15	42480175	42480175	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaattccctgtaacacagtCatcctgccaggaaagctgag	8	11	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42480175	A	A	42480175	1	1	91	0	1	0	0	0	0	0	0	0	17336	841	29	3		3	VPS39	15	42480175	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2446166	42480175	60051217	791	92785											
TGM7	116179	broad.mit.edu	37	chr15	43574190	43574190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaaatgacttcatcggcGttcacctcggcatacacaaa	7	13	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43574190	T	T	43574190	3	4	91	1	0	0	0	0	1	0	0	0	15958	1136	40	3	949	3	TGM7	15	43574190	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1094015	43574190	58957202	792	92786											
FRMD5	84978	broad.mit.edu	37	chr15	44166263	44166263	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaggagcaaaacaaagagGagtcccatggtcacaaggag	14	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44166263	T	T	44166263	2	4	91	1	0	0	0	0	0	0	0	1	6113	1161	41	3		3	FRMD5	15	44166263	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	592073	44166263	58365129	793	92787											
SLC12A1	6557	broad.mit.edu	37	chr15	48559802	48559802	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagatgaacagtggcatggcGaaaaaacaggcctggcttat	13	7	0	2	rs150609105	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48559802	A	A	48559802	2	1	91	1	0	0	0	0	0	0	0	1	14495	1045	37	4		4	SLC12A1	15	48559802	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4393539	48559802	53971590	794	92788											
DUT	1854	broad.mit.edu	37	chr15	48624496	48624496	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttcacccagtaagcgggcCcggcctgcggaggtgggcgg	17	12	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48624496	T	T	48624496	2	4	91	1	0	0	0	0	0	0	0	1	4873	610	22	4		4	DUT	15	48624496	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	64694	48624496	53906896	795	92789											
MYO5A	4644	broad.mit.edu	37	chr15	52697645	52697645	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaatagaaactaaacaAttacagcagacaattttaag	5	6	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52697645	T	T	52697645	1	4	91	0	1	0	0	0	0	0	0	0	10172	116	4	5		5	MYO5A	15	52697645	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	4073149	52697645	49833747	796	92790											
ALDH1A2	8854	broad.mit.edu	37	chr15	58258026	58258026	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttggataagctttccaacCtgaaagaagggaaatggaga	11	6	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58258026	A	A	58258026	5	1	91	1	0	0	0	0	0	0	1	0	491	695	24	2	782	2	ALDH1A2	15	58258026	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5560381	58258026	44273366	797	92791											
PPIB	5479	broad.mit.edu	37	chr15	64448275	64448275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatcttgccgcagtctgCgatgatcacatccttcaggg	10	13	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64448275	A	A	64448275	3	1	91	1	0	0	0	0	1	0	0	0	12420	768	27	3	56	3	PPIB	15	64448275	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6190249	64448275	38083117	798	92792											
IGDCC4	57722	broad.mit.edu	37	chr15	65684163	65684163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaaagaagaggaagcGgctagcagagccctcacctg	13	9	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65684163	T	T	65684163	1	4	91	0	1	0	0	0	0	0	0	0	7639	1131	39	1		1	IGDCC4	15	65684163	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1235888	65684163	36847229	799	92793											
LBXCOR1	390598	broad.mit.edu	37	chr15	68123280	68123280	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttgagagtgatgggtcAttcctgtagaggggtgttat	16	4	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68123280	C	C	68123280	1	2	91	0	1	0	0	0	0	0	0	0	8727	232	8	5		5	LBXCOR1	15	68123280	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	2439117	68123280	34408112	800	92794											
ITGA11	22801	broad.mit.edu	37	chr15	68596157	68596157	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagtaggaggccccccaGggtgctgcctacaatgatcc	12	14	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68596157	A	A	68596157	2	1	91	1	0	0	0	0	0	0	0	1	7944	991	35	4		4	ITGA11	15	68596157	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	472877	68596157	33935235	801	92795											
THSD4	79875	broad.mit.edu	37	chr15	72069520	72069520	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttctcttcccactggtccAggctgcctcttgtgctcagg	9	15	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72069520	T	T	72069520	1	4	91	0	1	0	0	0	0	0	0	0	16001	203	7	5		5	THSD4	15	72069520	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3473363	72069520	30461872	802	92796											
NEO1	4756	broad.mit.edu	37	chr15	73566308	73566308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acggaactcaaagggcatggGacccatgtctgaagctgtcc	12	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73566308	T	T	73566308	3	4	91	1	0	0	0	0	1	0	0	0	10431	1174	41	3	3200	3	NEO1	15	73566308	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1496788	73566308	28965084	803	92797											
CCDC33	80125	broad.mit.edu	37	chr15	74572437	74572437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactcctcaacttcaagtaCgtgacccctggtgcctcgcc	7	17	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74572437	A	A	74572437	1	1	91	0	1	0	0	0	0	0	0	0	2833	551	19	3		3	CCDC33	15	74572437	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1006129	74572437	27958955	804	92798											
TBC1D2B	23102	broad.mit.edu	37	chr15	78295617	78295617	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggttgtcaagtgtgtataTctgaaaatagctgagctgag	12	5	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78295617	C	C	78295617	1	2	91	0	1	0	0	0	0	0	0	0	15738	1450	50	5		5	TBC1D2B	15	78295617	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	3723180	78295617	24235775	805	92799											
CHRNA3	1136	broad.mit.edu	37	chr15	78894042	78894042	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgacgatggacaaggttacAaaaatcatggtgaacaggag	12	5	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78894042	T	T	78894042	3	4	91	1	0	0	0	0	1	0	0	0	3415	127	5	5	668	5	CHRNA3	15	78894042	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	598425	78894042	23637350	806	92800											
AGBL1	123624	broad.mit.edu	37	chr15	87531130	87531130	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttttcccactcaataAtatgtttttaaaatccatct	2	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87531130	G	G	87531130	1	3	91	0	1	0	0	0	0	0	0	0	375	116	4	5		5	AGBL1	15	87531130	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	8637088	87531130	15000262	807	92801											
A2BP1	54715	broad.mit.edu	37	chr16	7759057	7759057	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacctctattttcctttcaGttacggacgagtttatgctg	7	10	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7759057	C	C	7759057	5	2	91	1	0	0	0	0	0	0	1	0	3	1043	36	4	1236	4	A2BP1	16	7759057	Splice_Site	SNP	G	TCGA-17-Z062-01A-01W-0747-08		7759057	82595696	808	92802											
GRIN2A	2903	broad.mit.edu	37	chr16	9858108	9858108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcgctcgacctcactaCagtccttggggtatttggag	13	10	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9858108	A	A	9858108	3	1	91	1	0	0	0	0	1	0	0	0	6845	478	17	3	1105	3	GRIN2A	16	9858108	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2099051	9858108	80496645	809	92803											
CLEC16A	23274	broad.mit.edu	37	chr16	11120823	11120823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaagtaaacagcgcgcGtgctgtctttcccatgtggt	12	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11120823	T	T	11120823	1	4	91	0	1	0	0	0	0	0	0	0	3532	1160	40	3		3	CLEC16A	16	11120823	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1262715	11120823	79233930	810	92804											
MKL2	57496	broad.mit.edu	37	chr16	14345718	14345718	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaacatttattcattacaGgttttcacaaactcagcatc	4	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14345718	A	A	14345718	5	1	91	1	0	0	0	0	0	0	1	0	9695	1014	35	4	2299	4	MKL2	16	14345718	Splice_Site	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3224895	14345718	76009035	811	92805											
ACSM2A	123876	broad.mit.edu	37	chr16	20482260	20482260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcccatgatcttaatcaCtcagcagcctctcttgtgag	7	13	4	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20482260	A	A	20482260	1	1	91	0	1	0	0	0	0	0	0	0	183	580	20	3		3	ACSM2A	16	20482260	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6136542	20482260	69872493	812	92806											
DNAH3	55567	broad.mit.edu	37	chr16	20974538	20974538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagatccctgctgtaagggAcgggctactgatatccaccc	11	12	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20974538	G	G	20974538	1	3	91	0	1	0	0	0	0	0	0	0	4643	290	10	5		5	DNAH3	16	20974538	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	492278	20974538	69380215	813	92807											
ERN2	10595	broad.mit.edu	37	chr16	23716211	23716211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgaacacctacagcagctGggtgtccaaggtagagaaga	12	10	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23716211	T	T	23716211	3	4	91	1	0	0	0	0	1	0	0	0	5280	1357	47	2	1993	2	ERN2	16	23716211	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2741673	23716211	66638542	814	92808											
ARHGAP17	55114	broad.mit.edu	37	chr16	24971426	24971426	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accacagattaaatgtccatCaactgcctggtacaaccata	5	12	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24971426	T	T	24971426	1	4	91	0	1	0	0	0	0	0	0	0	869	841	29	4		4	ARHGAP17	16	24971426	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1255215	24971426	65383327	815	92809											
AQP8	343	broad.mit.edu	37	chr16	25228413	25228413	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcttcctctccaggctGgcagagcaaggggggctgtg	16	11	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25228413	T	T	25228413	1	4	91	0	1	0	0	0	0	0	0	0	834	1363	47	2		2	AQP8	16	25228413	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	256987	25228413	65126340	816	92810											
HS3ST4	9951	broad.mit.edu	37	chr16	26043928	26043928	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcatctccattttctgcagGgttattcccctccttgccag	8	14	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26043928	C	C	26043928	1	2	91	0	1	0	0	0	0	0	0	0	7434	1247	43	4		4	HS3ST4	16	26043928	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	815515	26043928	64310825	817	92811											
GTF3C1	2975	broad.mit.edu	37	chr16	27539839	27539842	+	Intron	DEL	AGAG	-	-													ccacaaggcagaatgtgatcAgagagagagaggctgaagct							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27539842	-	-	27539839	6	5	91	0	1	1	0	1	0	0	0	0	6937	203	7	0		0	GTF3C1	16	27539839	Intron	DEL	AGAG	TCGA-17-Z062-01A-01W-0747-08	1495911	27539839	62814914	818	92812											
XPO6	23214	broad.mit.edu	37	chr16	28112854	28112854	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacagctggtcaggaactcTgggaggaaggcggcaaagaa	15	8	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28112854	C	C	28112854	2	2	91	1	0	0	0	0	0	0	0	1	17575	1567	55	5		5	XPO6	16	28112854	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	573015	28112854	62241899	819	92813											
DOC2A	8448	broad.mit.edu	37	chr16	30017728	30017728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacccgcagccagctcctcCctcaccaatgaagtcattgg	7	17	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30017728	A	A	30017728	1	1	91	0	1	0	0	0	0	0	0	0	4723	638	22	2		2	DOC2A	16	30017728	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1904874	30017728	60337025	820	92814											
ITGAL	3683	broad.mit.edu	37	chr16	30500399	30500399	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgttctctgctttgttccCcaggcacaagcaaacaggac	8	14	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30500399	T	T	30500399	1	4	91	0	1	0	0	0	0	0	0	0	7956	638	22	4		4	ITGAL	16	30500399	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	482671	30500399	59854354	821	92815											
ORC6L	23594	broad.mit.edu	37	chr16	46727136	46727136	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaagttaccaatttacAagtgggtttttcatccccaa	6	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46727136	C	C	46727136	1	2	91	0	1	0	0	0	0	0	0	0	11360	145	5	5		5	ORC6L	16	46727136	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	16226737	46727136	43627617	822	92816											
BRD7	29117	broad.mit.edu	37	chr16	50388478	50388478	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatcattttctacaaccatTattaaatatctcatacagaa	2	8	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50388478	C	C	50388478	1	2	91	0	1	0	0	0	0	0	0	0	1514	1769	61	5		5	BRD7	16	50388478	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	3661342	50388478	39966275	823	92817											
SALL1	6299	broad.mit.edu	37	chr16	51175198	51175198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggggtagctgtttcacaCcactaatgctggcagattgg	13	8	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51175198	A	A	51175198	3	1	91	1	0	0	0	0	1	0	0	0	13921	507	18	3	3047	3	SALL1	16	51175198	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	786720	51175198	39179555	824	92818											
FTSJD1	55783	broad.mit.edu	37	chr16	71319117	71319117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttggcaatcaaaactcCcatctgcagtgaccaagtga	7	12	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71319117	A	A	71319117	3	1	91	1	0	0	0	0	1	0	0	0	6150	623	22	2	1609	2	FTSJD1	16	71319117	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	20143919	71319117	19035636	825	92819											
CHST5	23563	broad.mit.edu	37	chr16	75563211	75563211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcttagtgaagggcaacgCgtggcgccaggcctgggaga	17	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75563211	A	A	75563211	3	1	91	1	0	0	0	0	1	0	0	0	3438	768	27	3	167	3	CHST5	16	75563211	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4244094	75563211	14791542	826	92820											
VAT1L	57687	broad.mit.edu	37	chr16	77910358	77910358	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctcaaacccctgggaaccTacattttatatggtgagtgc	8	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77910358	A	A	77910358	3	1	91	1	0	0	0	0	1	0	0	0	17257	1522	53	5	832	5	VAT1L	16	77910358	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2347147	77910358	12444395	827	92821											
CLEC3A	10143	broad.mit.edu	37	chr16	78061932	78061932	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgccttgggtcctacattCcaaagcttgattttatttta	6	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78061932	A	A	78061932	1	1	91	0	1	0	0	0	0	0	0	0	3542	870	30	3		3	CLEC3A	16	78061932	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	151574	78061932	12292821	828	92822											
FOXC2	2303	broad.mit.edu	37	chr16	86602418	86602418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctatcgccacgcagccCcctactcctacgactgcacg	6	20	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86602418	A	A	86602418	3	1	91	1	0	0	0	0	1	0	0	0	6053	623	22	2	1479	2	FOXC2	16	86602418	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8540486	86602418	3752335	829	92823											
ZZEF1	23140	broad.mit.edu	37	chr17	3984618	3984618	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaagagactgccacatcaCgtgcccccacaagcatgaga	8	15	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3984618	T	T	3984618	1	4	91	0	1	0	0	0	0	0	0	0	18384	551	19	4		4	ZZEF1	17	3984618	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08		3984618	77210592	830	92824											
TP53	7157	broad.mit.edu	37	chr17	7579377	7579377	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggaaaccgtagctgccctGgtaggttttctgggaaggga	15	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579377	A	A	7579377	4	1	91	1	0	0	0	0	0	1	0	0	16505	1357	47	4	992	4	TP53	17	7579377	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3594759	7579377	73615833	831	92825											
MYH13	8735	broad.mit.edu	37	chr17	10206756	10206756	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttcgtacttgtgggctccCttcagggcttcagctcccct	10	15	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10206756	T	T	10206756	2	4	91	1	0	0	0	0	0	0	0	1	10126	680	24	4		4	MYH13	17	10206756	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2627379	10206756	70988454	832	92826											
MYH13	8735	broad.mit.edu	37	chr17	10214506	10214506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcctgaagattcttgcCagtttctgcaatctgctcag	8	12	4	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10214506	A	A	10214506	3	1	91	1	0	0	0	0	1	0	0	0	10126	594	21	2	1282	2	MYH13	17	10214506	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7750	10214506	70980704	833	92827											
MYH8	4626	broad.mit.edu	37	chr17	10296518	10296518	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcttcttggtgttaatgaGactggtattctgttaaaagt	9	4	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10296518	T	T	10296518	3	4	91	1	0	0	0	0	1	0	0	0	10135	942	33	3	657	3	MYH8	17	10296518	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	82012	10296518	70898692	834	92828											
WSB1	26118	broad.mit.edu	37	chr17	25633913	25633913	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagccagtaaagcagtacGtgtcaaagttcttgtacatt	10	8	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25633913	T	T	25633913	1	4	91	0	1	0	0	0	0	0	0	0	17531	1160	40	3		3	WSB1	17	25633913	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	15337395	25633913	55561297	835	92829											
SSH2	85464	broad.mit.edu	37	chr17	28004838	28004838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttactaactctttcaacaCcaaggataaacccttaaatt	3	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28004838	A	A	28004838	1	1	91	0	1	0	0	0	0	0	0	0	15303	522	18	3		3	SSH2	17	28004838	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2370925	28004838	53190372	836	92830											
UNC45B	146862	broad.mit.edu	37	chr17	33475407	33475407	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccaaggacaaggccctgcTggccacgctttatcggaacc	11	14	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33475407	A	A	33475407	3	1	91	1	0	0	0	0	1	0	0	0	17115	1580	55	5	127	5	UNC45B	17	33475407	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	5470569	33475407	47719803	837	92831											
AP2B1	163	broad.mit.edu	37	chr17	33977937	33977937	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttatgcttttatagtctgGaaaagaactgctgtacattt	7	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33977937	T	T	33977937	1	4	91	0	1	0	0	0	0	0	0	0	743	1189	41	3		3	AP2B1	17	33977937	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	502530	33977937	47217273	838	92832											
GAS2L2	246176	broad.mit.edu	37	chr17	34072118	34072118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacccaggaagacataggCcagtggcctggggattcgtg	16	9	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34072118	A	A	34072118	3	1	91	1	0	0	0	0	1	0	0	0	6309	739	26	3	248	3	GAS2L2	17	34072118	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	94181	34072118	47123092	839	92833											
CCL15	6359	broad.mit.edu	37	chr17	34326003	34326003	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaatcactgggtggcagCagtatgtttcaacatctcca	10	9	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34326003	T	T	34326003	1	4	91	0	1	0	0	0	0	0	0	0	2914	725	25	4		4	CCL15	17	34326003	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	253885	34326003	46869207	840	92834											
TADA2A	6871	broad.mit.edu	37	chr17	35830677	35830677	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaggaggcattctttctggGatgccttggccttcacatat	11	9	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35830677	C	C	35830677	1	2	91	0	1	0	0	0	0	0	0	0	15629	1189	41	4		4	TADA2A	17	35830677	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1504674	35830677	45364533	841	92835											
C17orf98	388381	broad.mit.edu	37	chr17	36997587	36997587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcggtgctcacagccaccCcgtccaagataaagcctttc	8	16	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36997587	A	A	36997587	3	1	91	1	0	0	0	0	1	0	0	0	1911	623	22	2	420	2	C17orf98	17	36997587	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1166910	36997587	44197623	842	92836											
RAPGEFL1	51195	broad.mit.edu	37	chr17	38349661	38349661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccgcaaataccggagccGgcccctttgtgagtacccag	10	14	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38349661	T	T	38349661	3	4	91	1	0	0	0	0	1	0	0	0	13157	1116	39	1	1284	1	RAPGEFL1	17	38349661	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1352074	38349661	42845549	843	92837											
KRTAP4-12	83755	broad.mit.edu	37	chr17	39280289	39280289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggtggtcctgcagcagGtggtctggcagcagctgggg	19	9	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39280289	T	T	39280289	3	4	91	1	0	0	0	0	1	0	0	0	8622	1261	44	3	523	3	KRTAP4-12	17	39280289	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	930628	39280289	41914921	844	92838											
KRTAP9-9	81870	broad.mit.edu	37	chr17	39389214	39389214	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtgtgtacagctgctGccagccttcttgctgctaat	9	13	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39389214	T	T	39389214	1	4	91	0	1	0	0	0	0	0	0	0	8649	1319	46	3		3	KRTAP9-9	17	39389214	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	108925	39389214	41805996	845	92839											
GAST	2520	broad.mit.edu	37	chr17	39871692	39871692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctttgcagacgagatgCagcgactgtgtgtgtatgtg	13	9	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39871692	A	A	39871692	3	1	91	1	0	0	0	0	1	0	0	0	6314	711	25	3	6	3	GAST	17	39871692	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	482478	39871692	41323518	846	92840											
WNK4	65266	broad.mit.edu	37	chr17	40937208	40937208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggataagaacgagaggtggGggtgaaagggcagagcgtgg	21	4	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40937208	T	T	40937208	1	4	91	0	1	0	0	0	0	0	0	0	17507	1247	43	2		2	WNK4	17	40937208	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1065516	40937208	40258002	847	92841											
WNK4	65266	broad.mit.edu	37	chr17	40939444	40939444	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagccaggacctccaccagCaactgtgcccatggcccccg	10	18	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40939444	G	G	40939444	3	3	91	1	0	0	0	0	1	0	0	0	17507	710	25	4	1651	4	WNK4	17	40939444	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2236	40939444	40255766	848	92842											
C17orf53	78995	broad.mit.edu	37	chr17	42239276	42239278	+	In_Frame_Del	DEL	CTT	-	-													ctgagtgagcttcctgaagaCttcttctgtgggaccagtag							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42239278	-	-	42239276	7	5	91	1	0	1	0	1	0	0	0	0	1878	564	20	0	1958	0	C17orf53	17	42239276	In_Frame_Del	DEL	CTT	TCGA-17-Z062-01A-01W-0747-08	1299832	42239276	38955934	849	92843											
RUNDC3A	10900	broad.mit.edu	37	chr17	42392409	42392409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgactgcggcggggcgggGgacggggcctcgggacatcc	20	12	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42392409	T	T	42392409	1	4	91	0	1	0	0	0	0	0	0	0	13855	1247	43	2		2	RUNDC3A	17	42392409	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	153133	42392409	38802801	850	92844											
KIAA1267	284058	broad.mit.edu	37	chr17	44172206	44172206	+	Intron	DEL	A	-	-													gaaaaacccaagagagagacAagacacctcccgctcatcag					rs66674327		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44172206	-	-	44172206	6	5	91	0	1	1	0	1	0	0	0	0	8289	145	5	0		0	KIAA1267	17	44172206	Intron	DEL	A	TCGA-17-Z062-01A-01W-0747-08	1779797	44172206	37023004	851	92845											
HOXB13	10481	broad.mit.edu	37	chr17	46804191	46804191	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaccttggcgagaaccttCttctctttgacccggcggtt	9	13	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46804191	T	T	46804191	2	4	91	1	0	0	0	0	0	0	0	1	7367	912	32	4		4	HOXB13	17	46804191	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2631985	46804191	34391019	852	92846											
IGF2BP1	10642	broad.mit.edu	37	chr17	47121275	47121275	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggcaggggagtggagggTttctgggccatgctacttgg	18	7	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47121275	G	G	47121275	1	3	91	0	1	0	0	0	0	0	0	0	7643	1740	60	5		5	IGF2BP1	17	47121275	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	317084	47121275	34073935	853	92847											
CA10	56934	broad.mit.edu	37	chr17	49711135	49711135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggaaagggctgtataaGccccacagagtccctttttt	10	9	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49711135	T	T	49711135	1	4	91	0	1	0	0	0	0	0	0	0	2537	986	34	3		3	CA10	17	49711135	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2589860	49711135	31484075	854	92848											
KIF2B	84643	broad.mit.edu	37	chr17	51902347	51902347	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggagcagaaaattgatgcTctgaccgagatccaaaagaa	10	7	1	5			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51902347	A	A	51902347	2	1	91	1	0	0	0	0	0	0	0	1	8368	1538	54	5		5	KIF2B	17	51902347	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2191212	51902347	29292863	855	92849											
BZRAP1	9256	broad.mit.edu	37	chr17	56385038	56385038	+	Silent	SNP	C	A	A													tcaggattgggcgacattgaCacggggtcatagtcaaacag							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56385038	A	A	56385038	2	1	91	1	0	0	0	0	0	0	0	1	1587	465	17	3		3	BZRAP1	17	56385038	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4482691	56385038	24810172	856	92850	416	2									
BZRAP1	9256	broad.mit.edu	37	chr17	56385040	56385040	+	Missense_Mutation	SNP	C	A	A													aggattgggcgacattgacaCggggtcatagtcaaacagag							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56385040	A	A	56385040	3	1	91	1	0	0	0	0	1	0	0	0	1587	536	19	3	690	3	BZRAP1	17	56385040	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2	56385040	24810170	857	92851	416	2									
C17orf64	124773	broad.mit.edu	37	chr17	58506878	58506878	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccaggtcaagggagcccCctgcctgggcagccaagatc	12	16	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58506878	A	A	58506878	2	1	91	1	0	0	0	0	0	0	0	1	1888	610	22	2		2	C17orf64	17	58506878	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2121838	58506878	22688332	858	92852											
BCAS3	54828	broad.mit.edu	37	chr17	59147706	59147706	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattgggatcatctaaactGagtccagctgcctaattctg	8	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59147706	T	T	59147706	1	4	91	0	1	0	0	0	0	0	0	0	1357	1305	45	3		3	BCAS3	17	59147706	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	640828	59147706	22047504	859	92853											
TBX4	9496	broad.mit.edu	37	chr17	59556190	59556190	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacttaacaccaccctgcGttctcttccaccaggcagag	6	18	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59556190	A	A	59556190	1	1	91	0	1	0	0	0	0	0	0	0	15782	1160	40	4		4	TBX4	17	59556190	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	408484	59556190	21639020	860	92854											
MRC2	9902	broad.mit.edu	37	chr17	60744809	60744809	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccgcactgagtcctcgggCggctggcagaaccgtgactg	14	13	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60744809	T	T	60744809	2	4	91	1	0	0	0	0	0	0	0	1	9852	755	27	4		4	MRC2	17	60744809	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1188619	60744809	20450401	861	92855											
MARCH10	162333	broad.mit.edu	37	chr17	60821890	60821890	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaccattggtgcttggtctgCtgaaagatgcaaagtctttt	10	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60821890	G	G	60821890	5	3	91	1	0	0	0	0	0	0	1	0	9391	811	28	4	2072	4	MARCH10	17	60821890	Splice_Site	SNP	C	TCGA-17-Z062-01A-01W-0747-08	77081	60821890	20373320	862	92856											
GH2	2689	broad.mit.edu	37	chr17	61958348	61958348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgggggctctgaccacaGgtctaccccatccccacctg	10	19	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958348	T	T	61958348	1	4	91	0	1	0	0	0	0	0	0	0	6432	1015	35	2		2	GH2	17	61958348	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1136458	61958348	19236862	863	92857											
SCN4A	6329	broad.mit.edu	37	chr17	62049884	62049884	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacagacaggcagacagaTggatggatggcagacagaca	14	8	0	6			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62049884	C	C	62049884	1	2	91	0	1	0	0	0	0	0	0	0	14033	1479	51	5		5	SCN4A	17	62049884	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	91536	62049884	19145326	864	92858											
TEX2	55852	broad.mit.edu	37	chr17	62270815	62270815	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggcagacaaccatcagttCagggtgggcttccttccttc	11	12	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62270815	A	A	62270815	1	1	91	0	1	0	0	0	0	0	0	0	15903	841	29	3		3	TEX2	17	62270815	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	220931	62270815	18924395	865	92859											
GNA13	10672	broad.mit.edu	37	chr17	63052483	63052483	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcctcgcgcgcgcgctggtCgaagtcctgcccgtggatga	14	15	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63052483	G	G	63052483	3	3	91	1	0	0	0	0	1	0	0	0	6565	884	31	4	920	4	GNA13	17	63052483	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	781668	63052483	18142727	866	92860											
CACNG5	27091	broad.mit.edu	37	chr17	64875163	64875163	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgacatccgagtccacGgtcaatgttctaagtaagtg	10	10	2	1	rs144101002		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64875163	A	A	64875163	2	1	91	1	0	0	0	0	0	0	0	1	2586	1103	39	4		4	CACNG5	17	64875163	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1822680	64875163	16320047	867	92861											
WIPI1	55062	broad.mit.edu	37	chr17	66418017	66418017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaagaggctggtaggcaGgtgcattatcaacaggtctg	15	7	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66418017	A	A	66418017	1	1	91	0	1	0	0	0	0	0	0	0	17497	1015	35	4		4	WIPI1	17	66418017	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1542854	66418017	14777193	868	92862											
ABCA8	10351	broad.mit.edu	37	chr17	66891000	66891000	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttcacatttttcagaaaGattattagagacctgcatac	5	8	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66891000	T	T	66891000	1	4	91	0	1	0	0	0	0	0	0	0	38	957	33	3		3	ABCA8	17	66891000	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	472983	66891000	14304210	869	92863											
ABCA9	10350	broad.mit.edu	37	chr17	66978697	66978697	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtctctaaacagtcacTcttacctatctctaatttga	3	10	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66978697	A	A	66978697	1	1	91	0	1	0	0	0	0	0	0	0	39	1566	54	5		5	ABCA9	17	66978697	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	87697	66978697	14216513	870	92864											
ABCA9	10350	broad.mit.edu	37	chr17	67016539	67016539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatactcacatagtccacaGgctttttctttctttcttta	4	10	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67016539	T	T	67016539	3	4	91	1	0	0	0	0	1	0	0	0	39	991	35	2	2368	2	ABCA9	17	67016539	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	37842	67016539	14178671	871	92865											
RAB37	326624	broad.mit.edu	37	chr17	72741392	72741392	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggagggggcggctcagCtcctcaccccagcccagccc	15	17	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72741392	T	T	72741392	1	4	91	0	1	0	0	0	0	0	0	0	13035	812	28	4		4	RAB37	17	72741392	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5724853	72741392	8453818	872	92866											
OTOP3	347741	broad.mit.edu	37	chr17	72929656	72929656	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggcctccaacagaggCatggggggcaggaagagggg	19	9	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72929656	T	T	72929656	1	4	91	0	1	0	0	0	0	0	0	0	11401	725	25	4		4	OTOP3	17	72929656	5'Flank	SNP	C	TCGA-17-Z062-01A-01W-0747-08	188264	72929656	8265554	873	92867											
CANT1	124583	broad.mit.edu	37	chr17	76989810	76989810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacttgaaggacgagaagCcgtgagtggggaccaccgcc	15	10	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76989810	T	T	76989810	3	4	91	1	0	0	0	0	1	0	0	0	2643	739	26	4	181	4	CANT1	17	76989810	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4060154	76989810	4205400	874	92868											
RNF213	57674	broad.mit.edu	37	chr17	78357408	78357408	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacacccactggtggagttaCtgggtgttacaatctgtttg	12	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78357408	G	G	78357408	1	3	91	0	1	0	0	0	0	0	0	0	13588	580	20	4		4	RNF213	17	78357408	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1367598	78357408	2837802	875	92869											
YES1	7525	broad.mit.edu	37	chr18	756705	756705	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgaagatgacggacaTggtgacactgtagtgggttc	14	6	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	756705	C	C	756705	2	2	91	1	0	0	0	0	0	0	0	1	17601	1451	51	5		5	YES1	18	756705	Silent	SNP	T	TCGA-17-Z062-01A-01W-0747-08		756705	77320543	876	92870											
MYL12B	103910	broad.mit.edu	37	chr18	3277806	3277806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagctgctgacaaccatGggggatcggtttacagatga	14	7	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3277806	T	T	3277806	3	4	91	1	0	0	0	0	1	0	0	0	10140	1348	47	2	400	2	MYL12B	18	3277806	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2521101	3277806	74799442	877	92871											
LAMA1	284217	broad.mit.edu	37	chr18	7037598	7037598	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatttccaaggtaggcctcGggggctgcccagtagtactt	12	10	0	0	rs144105602	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7037598	C	C	7037598	2	2	91	1	0	0	0	0	0	0	0	1	8677	1103	39	4		4	LAMA1	18	7037598	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3759792	7037598	71039650	878	92872											
LAMA1	284217	broad.mit.edu	37	chr18	7038804	7038804	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgccgcgcagatggcgcctCccacctgaccaacaggccaa	10	19	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7038804	T	T	7038804	1	4	91	0	1	0	0	0	0	0	0	0	8677	870	30	4		4	LAMA1	18	7038804	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1206	7038804	71038444	879	92873											
DSG3	1830	broad.mit.edu	37	chr18	29044371	29044371	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actatttttatttatatcctAtttcttgatgaggttttaat	4	4	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29044371	T	T	29044371	1	4	91	0	1	0	0	0	0	0	0	0	4818	464	16	5		5	DSG3	18	29044371	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	22005567	29044371	49032877	880	92874											
TTR	7276	broad.mit.edu	37	chr18	29173044	29173044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttatcttcccgtttgcccCtcacttggtagagagaggct	9	11	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29173044	A	A	29173044	1	1	91	0	1	0	0	0	0	0	0	0	16864	696	24	2		2	TTR	18	29173044	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	128673	29173044	48904204	881	92875											
NOL4	8715	broad.mit.edu	37	chr18	31537511	31537511	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagggagacagaggagaagGgtttggagggctgctctctt	18	5	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31537511	A	A	31537511	1	1	91	0	1	0	0	0	0	0	0	0	10619	1247	43	4		4	NOL4	18	31537511	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2364467	31537511	46539737	882	92876											
PIK3C3	5289	broad.mit.edu	37	chr18	39584342	39584342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacaaaattcttgaaatGtgttaattgggatctacctc	7	7	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39584342	T	T	39584342	3	4	91	1	0	0	0	0	1	0	0	0	12007	1377	48	3	1045	3	PIK3C3	18	39584342	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	8046831	39584342	38492906	883	92877											
SETBP1	26040	broad.mit.edu	37	chr18	42530885	42530885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccagcatccaaaatttgCtgcaaaacgaaggtggactt	8	9	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42530885	A	A	42530885	3	1	91	1	0	0	0	0	1	0	0	0	14242	797	28	3	1783	3	SETBP1	18	42530885	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2946543	42530885	35546363	884	92878											
SLC14A2	8170	broad.mit.edu	37	chr18	43262343	43262343	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctctcaccttcctgctcctGacgaccaataaccccgccat	5	19	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43262343	C	C	43262343	2	2	91	1	0	0	0	0	0	0	0	1	14510	1277	45	4		4	SLC14A2	18	43262343	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	731458	43262343	34814905	885	92879											
ALPK2	115701	broad.mit.edu	37	chr18	56191220	56191220	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccgtagctgttcttgatgCagcagtaatagagtccctgg	11	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56191220	G	G	56191220	3	3	91	1	0	0	0	0	1	0	0	0	545	710	25	4	964	4	ALPK2	18	56191220	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	12928877	56191220	21886028	886	92880											
SERPINB13	5275	broad.mit.edu	37	chr18	61259538	61259538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggggagaatctgggcttgCttttgccaagataacctgtt	12	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61259538	A	A	61259538	1	1	91	0	1	0	0	0	0	0	0	0	14213	812	28	3		3	SERPINB13	18	61259538	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5068318	61259538	16817710	887	92881											
SERPINB4	6318	broad.mit.edu	37	chr18	61306561	61306561	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgcctcatcatctgtacaGatttgtatgtattctgcaat	6	8	4	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61306561	T	T	61306561	3	4	91	1	0	0	0	0	1	0	0	0	14216	942	33	3	554	3	SERPINB4	18	61306561	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	47023	61306561	16770687	888	92882											
SERPINB2	5055	broad.mit.edu	37	chr18	61562431	61562431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttagagccacctgatagCcatctgttttaaaagttcag	7	8	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61562431	A	A	61562431	1	1	91	0	1	0	0	0	0	0	0	0	14214	754	26	3		3	SERPINB2	18	61562431	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	255870	61562431	16514817	889	92883											
SERPINB2	5055	broad.mit.edu	37	chr18	61569861	61569861	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctttcgtgagatgagatGaatatatactccttacaaat	6	7	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61569861	T	T	61569861	1	4	91	0	1	0	0	0	0	0	0	0	14214	1305	45	3		3	SERPINB2	18	61569861	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7430	61569861	16507387	890	92884											
HMSD	284293	broad.mit.edu	37	chr18	61620724	61620724	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccttggccatggttttcaTgggggcaaagggaaacactg	14	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61620724	A	A	61620724	3	1	91	1	0	0	0	0	1	0	0	0	7313	1464	51	5	37	5	HMSD	18	61620724	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	50863	61620724	16456524	891	92885											
CDH7	1005	broad.mit.edu	37	chr18	63430022	63430022	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actaagccaactggaactgtGccttttctcttgtcaaggtt	8	10	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63430022	C	C	63430022	1	2	91	0	1	0	0	0	0	0	0	0	3145	1334	46	4		4	CDH7	18	63430022	5'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1809298	63430022	14647226	892	92886											
CDH7	1005	broad.mit.edu	37	chr18	63491946	63491946	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggccagaattaaagctgCtgatgcagatattggagcta	12	6	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63491946	T	T	63491946	3	4	91	1	0	0	0	0	1	0	0	0	3145	797	28	4	878	4	CDH7	18	63491946	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	61924	63491946	14585302	893	92887											
CD226	10666	broad.mit.edu	37	chr18	67562812	67562812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaactcacctaaattcagCcatttaaaaaaatgctgaat	4	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67562812	A	A	67562812	1	1	91	0	1	0	0	0	0	0	0	0	3016	754	26	3		3	CD226	18	67562812	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4070866	67562812	10514436	894	92888											
RTTN	25914	broad.mit.edu	37	chr18	67776792	67776792	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggctttgtgagaggagagTgtgagctccatcccggaaac	15	8	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67776792	A	A	67776792	3	1	91	1	0	0	0	0	1	0	0	0	13848	1696	59	5	2923	5	RTTN	18	67776792	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	213980	67776792	10300456	895	92889											
MUC16	94025	broad.mit.edu	37	chr19	9003444	9003444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgagtgcagctggcaccaGtgggcagggcttgtgtctct	17	10	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9003444	T	T	9003444	1	4	91	0	1	0	0	0	0	0	0	0	10067	1044	36	3		3	MUC16	19	9003444	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08		9003444	50125539	896	92890											
MUC16	94025	broad.mit.edu	37	chr19	9048299	9048299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttagaattggaatagttGtactggtcactgccctggaa	12	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9048299	T	T	9048299	3	4	91	1	0	0	0	0	1	0	0	0	10067	1377	48	3	10511	3	MUC16	19	9048299	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	44855	9048299	50080684	897	92891											
MUC16	94025	broad.mit.edu	37	chr19	9063443	9063443	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagacgtgaggagtgaagtCacaggaagaggagaggaaga	17	5	1	6			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9063443	A	A	9063443	2	1	91	1	0	0	0	0	0	0	0	1	10067	813	29	3		3	MUC16	19	9063443	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	15144	9063443	50065540	898	92892											
MUC16	94025	broad.mit.edu	37	chr19	9090970	9090970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagatgatgacaaaggcGcactggtacttattctgctg	11	8	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9090970	T	T	9090970	3	4	91	1	0	0	0	0	1	0	0	0	10067	1087	38	3	43014	3	MUC16	19	9090970	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	27527	9090970	50038013	899	92893											
OR7G2	390882	broad.mit.edu	37	chr19	9213879	9213879	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcctctatcagtcccaggAgaaggaattttgaaatagct	9	8	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9213879	T	T	9213879	3	4	91	1	0	0	0	0	1	0	0	0	11317	304	11	5	935	5	OR7G2	19	9213879	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	122909	9213879	49915104	900	92894											
ZNF69	7620	broad.mit.edu	37	chr19	12014497	12014498	+	Missense_Mutation	DNP	GG	TT	TT													agtgatgctggaaactttcaGgaacctgacctctgtaggta							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	12014498	TT	TT	12014497	3	4	91	1	0	0	0	0	1	0	0	0	18222	1000	35	2	137	2	ZNF69	19	12014497	Missense_Mutation	DNP	GG	TCGA-17-Z062-01A-01W-0747-08	2800618	12014497	47114486	901	92895											
CASP14	23581	broad.mit.edu	37	chr19	15164484	15164484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtttgggggaaaggtaCtaggttggaagtgtaggcta	17	4	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15164484	A	A	15164484	1	1	91	0	1	0	0	0	0	0	0	0	2696	580	20	3		3	CASP14	19	15164484	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3149987	15164484	43964499	902	92896											
NCAN	1463	broad.mit.edu	37	chr19	19337983	19337983	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagggaggaagctccaaatCccagctgggtcctctggccc	13	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19337983	A	A	19337983	1	1	91	0	1	0	0	0	0	0	0	0	10299	870	30	3		3	NCAN	19	19337983	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4173499	19337983	39791000	903	92897											
NCAN	1463	broad.mit.edu	37	chr19	19359474	19359474	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actagtttagccccagatgtGagcacctctctcactagaga	8	12	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19359474	T	T	19359474	1	4	91	0	1	0	0	0	0	0	0	0	10299	1305	45	3		3	NCAN	19	19359474	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	21491	19359474	39769509	904	92898											
ZNF676	163223	broad.mit.edu	37	chr19	22363326	22363326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagttggaagctttgccaCattcttcacatttgtagggc	10	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363326	A	A	22363326	3	1	91	1	0	0	0	0	1	0	0	0	18210	478	17	3	577	3	ZNF676	19	22363326	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3003852	22363326	36765657	905	92899											
ZNF676	163223	broad.mit.edu	37	chr19	22363351	22363351	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacatttgtagggcttctCttcagcatgaattgccttat	7	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363351	A	A	22363351	4	1	91	1	0	0	0	0	0	1	0	0	18210	922	32	3	602	3	ZNF676	19	22363351	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	25	22363351	36765632	906	92900											
ZNF98	148198	broad.mit.edu	37	chr19	22586189	22586189	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattgaagttatcctcaccCacaaagaccaggtttctgta	6	10	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22586189	A	A	22586189	2	1	91	1	0	0	0	0	0	0	0	1	18332	608	21	2		2	ZNF98	19	22586189	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	222838	22586189	36542794	907	92901											
ZNF254	9534	broad.mit.edu	37	chr19	24309224	24309224	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaacaaagaaggttataatgGacttaaccagtgtttcacaa	8	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24309224	C	C	24309224	3	2	91	1	0	0	0	0	1	0	0	0	17924	1174	41	4	436	4	ZNF254	19	24309224	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1723035	24309224	34819759	908	92902											
TSHZ3	57616	broad.mit.edu	37	chr19	31768670	31768670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctcccatccttgcaccCatcccgcggggggctggggc	16	16	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768670	A	A	31768670	3	1	91	1	0	0	0	0	1	0	0	0	16750	594	21	2	1220	2	TSHZ3	19	31768670	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	7459446	31768670	27360313	909	92903											
RBM42	79171	broad.mit.edu	37	chr19	36122121	36122121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggccctccttttgtagGccctggtaagtaaagagtag	14	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36122121	T	T	36122121	3	4	91	1	0	0	0	0	1	0	0	0	13244	1203	42	3	372	3	RBM42	19	36122121	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	4353451	36122121	23006862	910	92904											
KIRREL2	84063	broad.mit.edu	37	chr19	36353335	36353335	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatcccaaactcaatccctGagcccccgcttcctggttcc	6	18	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36353335	T	T	36353335	1	4	91	0	1	0	0	0	0	0	0	0	8396	1305	45	3		3	KIRREL2	19	36353335	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	231214	36353335	22775648	911	92905											
ZNF585A	199704	broad.mit.edu	37	chr19	37644059	37644059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttgtgtgaatgctttgcCacagtcagtgcattcatggt	10	8	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37644059	A	A	37644059	3	1	91	1	0	0	0	0	1	0	0	0	18144	594	21	2	1571	2	ZNF585A	19	37644059	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1290724	37644059	21484924	912	92906											
ZNF569	148266	broad.mit.edu	37	chr19	37917230	37917230	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagcaggatccaatctcttCcactcctcctgagtgaagtc	8	13	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37917230	T	T	37917230	4	4	91	1	0	0	0	0	0	1	0	0	18127	856	30	4	2006	4	ZNF569	19	37917230	Nonsense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	273171	37917230	21211753	913	92907											
SUPT5H	6829	broad.mit.edu	37	chr19	39959644	39959644	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattattcccctaggacccaCtcagcccactcagctgggct	7	16	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39959644	G	G	39959644	1	3	91	0	1	0	0	0	0	0	0	0	15517	580	20	4		4	SUPT5H	19	39959644	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2042414	39959644	19169339	914	92908											
TIMM50	92609	broad.mit.edu	37	chr19	39977153	39977153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgccgtgggttcatggGtgggcctctgggatttggcg	19	7	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39977153	T	T	39977153	1	4	91	0	1	0	0	0	0	0	0	0	16036	1276	44	3		3	TIMM50	19	39977153	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	17509	39977153	19151830	915	92909											
ATP1A3	478	broad.mit.edu	37	chr19	42485992	42485992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgaggtccctgggggaGgcatgtgtgagggccaggga	19	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42485992	T	T	42485992	1	4	91	0	1	0	0	0	0	0	0	0	1134	1015	35	2		2	ATP1A3	19	42485992	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2508839	42485992	16642991	916	92910											
CIC	23152	broad.mit.edu	37	chr19	42794391	42794391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttcatgcagggctttGgtcggaaggtgttttcacct	11	9	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42794391	T	T	42794391	3	4	91	1	0	0	0	0	1	0	0	0	3455	1348	47	2	1509	2	CIC	19	42794391	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	308399	42794391	16334592	917	92911											
MEGF8	1954	broad.mit.edu	37	chr19	42839471	42839471	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacctcaacaatgccctGggtgacctcgtcctatacaa	8	14	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42839471	T	T	42839471	2	4	91	1	0	0	0	0	0	0	0	1	9556	1335	47	2		2	MEGF8	19	42839471	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	45080	42839471	16289512	918	92912											
PSG3	5671	broad.mit.edu	37	chr19	43233937	43233937	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagatactcacagaggacAttcagggtgactgggtaact	11	7	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43233937	T	T	43233937	3	4	91	1	0	0	0	0	1	0	0	0	12762	214	8	5	317	5	PSG3	19	43233937	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	394466	43233937	15895046	919	92913											
PSG3	5671	broad.mit.edu	37	chr19	43233974	43233974	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactgcggatgccaccatatCggtcctgtatttcacattga	8	11	1	1	rs151272583		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43233974	T	T	43233974	3	4	91	1	0	0	0	0	1	0	0	0	12762	884	31	4	354	4	PSG3	19	43233974	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	37	43233974	15895009	920	92914											
PSG3	5671	broad.mit.edu	37	chr19	43243222	43243222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggcagtggtaggcaagttCcagaagtttaaaagtaatgc	13	5	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43243222	A	A	43243222	3	1	91	1	0	0	0	0	1	0	0	0	12762	856	30	3	1222	3	PSG3	19	43243222	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	9248	43243222	15885761	921	92915											
PSG8	440533	broad.mit.edu	37	chr19	43269787	43269787	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagcctaggatccagaaGcttcctgagcacagctctca	10	12	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43269787	T	T	43269787	1	4	91	0	1	0	0	0	0	0	0	0	12767	986	34	3		3	PSG8	19	43269787	5'UTR	SNP	G	TCGA-17-Z062-01A-01W-0747-08	26565	43269787	15859196	922	92916											
PSG6	5675	broad.mit.edu	37	chr19	43430884	43430884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcgctgtgtgaataacagAgagaagattgtcctgtgtgg	13	6	0	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43430884	G	G	43430884	1	3	91	0	1	0	0	0	0	0	0	0	12765	319	11	5		5	PSG6	19	43430884	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	161097	43430884	15698099	923	92917											
PSG7	5676	broad.mit.edu	37	chr19	43441197	43441197	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctttccaggttatatgcTgtgtgcagggaggggctgag	16	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43441197	A	A	43441197	3	1	91	1	0	0	0	0	1	0	0	0	12766	1580	55	5	1251	5	PSG7	19	43441197	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	10313	43441197	15687786	924	92918											
PSG6	5675	broad.mit.edu	37	chr19	43520124	43520124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcactcttaggttcacaGgtgaaggttaagacatcctt	8	9	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520124	T	T	43520124	1	4	91	0	1	0	0	0	0	0	0	0	12765	1015	35	2		2	PSG6	19	43520124	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	78927	43520124	15608859	925	92919											
CD177	57126	broad.mit.edu	37	chr19	43865562	43865562	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccagctgctctgagcacaAagtcatgtacccccaccttc	8	16	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43865562	T	T	43865562	1	4	91	0	1	0	0	0	0	0	0	0	3001	29	1	5		5	CD177	19	43865562	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	345438	43865562	15263421	926	92920											
PVRL2	5819	broad.mit.edu	37	chr19	45377124	45377124	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatctgctaacttgtccaccCgctctgggattctcctcctt	6	15	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45377124	T	T	45377124	1	4	91	0	1	0	0	0	0	0	0	0	12948	667	23	4		4	PVRL2	19	45377124	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1511562	45377124	13751859	927	92921											
PLA2G4C	8605	broad.mit.edu	37	chr19	48603247	48603247	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcgacacacagaggaaacGgaaaatttccattaaataaa	9	7	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48603247	C	C	48603247	1	2	91	0	1	0	0	0	0	0	0	0	12098	1131	39	4		4	PLA2G4C	19	48603247	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3226123	48603247	10525736	928	92922											
C19orf75	284369	broad.mit.edu	37	chr19	51768909	51768909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctactgatgtcaagtgagGgtggagggggctcggtgact	17	7	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51768909	T	T	51768909	1	4	91	0	1	0	0	0	0	0	0	0	1969	1247	43	2		2	C19orf75	19	51768909	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	3165662	51768909	7360074	929	92923											
SIGLEC12	89858	broad.mit.edu	37	chr19	52000278	52000278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtggtcagatcggggtgCagtgggcagaccaacccctg	16	10	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52000278	A	A	52000278	1	1	91	0	1	0	0	0	0	0	0	0	14421	725	25	3		3	SIGLEC12	19	52000278	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	231369	52000278	7128705	930	92924											
ZNF677	342926	broad.mit.edu	37	chr19	53754830	53754830	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctttctttcctcttcCtctgagtttctttctcaggt	4	13	7	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53754830	T	T	53754830	1	4	91	0	1	0	0	0	0	0	0	0	18211	696	24	4		4	ZNF677	19	53754830	5'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1754552	53754830	5374153	931	92925											
LILRA3	11026	broad.mit.edu	37	chr19	54800032	54800032	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgcccagcgtcatcaCggcaagcatctcctcactca	7	17	6	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54800032	A	A	54800032	1	1	91	0	1	0	0	0	0	0	0	0	8858	551	19	3		3	LILRA3	19	54800032	3'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1045202	54800032	4328951	932	92926											
LAIR1	3903	broad.mit.edu	37	chr19	54866743	54866743	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacctccagtctccagctcTtgtctccaggacagctgcct	7	16	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54866743	A	A	54866743	1	1	91	0	1	0	0	0	0	0	0	0	8674	1624	56	5		5	LAIR1	19	54866743	3'UTR	SNP	T	TCGA-17-Z062-01A-01W-0747-08	66711	54866743	4262240	933	92927											
KIR2DL3	3804	broad.mit.edu	37	chr19	55270401	55270401	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcattgtcattgggatgcaGagtgaatgatccacgacttg	11	8	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55270401	T	T	55270401	1	4	91	0	1	0	0	0	0	0	0	0	8388	957	33	3		3	KIR2DL3	19	55270401	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	403658	55270401	3858582	934	92928											
KIR3DL1	3811	broad.mit.edu	37	chr19	55341802	55341803	+	3'UTR	DNP	CC	AG	AG													tcaaaaccgagttgccagctCccatgtaccagcagctggaa							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	55341803	AG	AG	55341802	1	1	91	0	1	0	0	0	0	0	0	0	8391	870	30	3		3	KIR3DL1	19	55341802	3'UTR	DNP	CC	TCGA-17-Z062-01A-01W-0747-08	71401	55341802	3787181	935	92929											
NLRP11	204801	broad.mit.edu	37	chr19	56312864	56312864	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagcaggtagtgttattgaAggggcacctctatccaccaa	12	9	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56312864	T	T	56312864	1	4	91	0	1	0	0	0	0	0	0	0	10568	87	3	5		5	NLRP11	19	56312864	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	971062	56312864	2816119	936	92930											
NLRP8	126205	broad.mit.edu	37	chr19	56459662	56459662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgatctggtggataaagtGggggtgggcttggctgctgg	20	4	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56459662	T	T	56459662	1	4	91	0	1	0	0	0	0	0	0	0	10578	1363	47	2		2	NLRP8	19	56459662	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	146798	56459662	2669321	937	92931											
USP29	57663	broad.mit.edu	37	chr19	57641436	57641436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccaagaaacaaaaccaCttcctttgtccattcagaat	4	12	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57641436	A	A	57641436	3	1	91	1	0	0	0	0	1	0	0	0	17186	565	20	3	1395	3	USP29	19	57641436	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1181774	57641436	1487547	938	92932											
USP29	57663	broad.mit.edu	37	chr19	57641688	57641688	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgaaagcaccaaaccacctCttcccttgagcagtagtgca	7	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57641688	G	G	57641688	3	3	91	1	0	0	0	0	1	0	0	0	17186	913	32	4	1647	4	USP29	19	57641688	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	252	57641688	1487295	939	92933											
PTPRA	5786	broad.mit.edu	37	chr20	3001899	3001899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccttccaggccctttgCatctgccatgggcaggaggt	11	13	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3001899	A	A	3001899	1	1	91	0	1	0	0	0	0	0	0	0	12903	725	25	3		3	PTPRA	20	3001899	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08		3001899	60023621	940	92934											
SIGLEC1	6614	broad.mit.edu	37	chr20	3675457	3675457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctggaggggctggccatCccgataccaacgatatgagg	13	12	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3675457	A	A	3675457	3	1	91	1	0	0	0	0	1	0	0	0	14418	855	30	3	2376	3	SIGLEC1	20	3675457	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	673558	3675457	59350063	941	92935											
CENPB	1059	broad.mit.edu	37	chr20	3767008	3767008	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcaggatcgtgctcagCgtggacggcgggatgttgaa	15	8	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3767008	A	A	3767008	2	1	91	1	0	0	0	0	0	0	0	1	3257	755	27	3		3	CENPB	20	3767008	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	91551	3767008	59258512	942	92936											
PAK7	57144	broad.mit.edu	37	chr20	9520240	9520240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaccaacatcaagtctaGgaatccccggagcactgaag	8	14	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9520240	T	T	9520240	3	4	91	1	0	0	0	0	1	0	0	0	11499	991	35	2	134	2	PAK7	20	9520240	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5753232	9520240	53505280	943	92937											
SNAP25	6616	broad.mit.edu	37	chr20	10258460	10258460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctatgatgtttccttgggCcatgatcccctagattccag	9	11	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10258460	A	A	10258460	1	1	91	0	1	0	0	0	0	0	0	0	14944	754	26	3		3	SNAP25	20	10258460	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	738220	10258460	52767060	944	92938											
CSRP2BP	57325	broad.mit.edu	37	chr20	18126120	18126120	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcactttttatttcgcaatGaaattagataccgaatatgt	7	6	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18126120	C	C	18126120	1	2	91	0	1	0	0	0	0	0	0	0	4002	1305	45	4		4	CSRP2BP	20	18126120	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7867660	18126120	44899400	945	92939											
ZNF133	7692	broad.mit.edu	37	chr20	18296642	18296642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctggggagaagccctacGcctgcaaggagtgtgggcga	16	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18296642	T	T	18296642	3	4	91	1	0	0	0	0	1	0	0	0	17849	1087	38	3	1154	3	ZNF133	20	18296642	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	170522	18296642	44728878	946	92940											
SLC24A3	57419	broad.mit.edu	37	chr20	19665861	19665861	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagtgccccagacaggGgcgtgaatgggacacggagg	17	11	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19665861	T	T	19665861	3	4	91	1	0	0	0	0	1	0	0	0	14581	1232	43	2	1226	2	SLC24A3	20	19665861	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1369219	19665861	43359659	947	92941											
C20orf26	26074	broad.mit.edu	37	chr20	20144727	20144727	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgacatctccactggaTatgcacagtatcaccatgtc	7	12	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20144727	A	A	20144727	3	1	91	1	0	0	0	0	1	0	0	0	2128	1406	49	5	1098	5	C20orf26	20	20144727	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	478866	20144727	42880793	948	92942											
C20orf26	26074	broad.mit.edu	37	chr20	20269485	20269485	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcagctggcagcagctaTgctacatctctttgatccaa	7	12	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20269485	A	A	20269485	3	1	91	1	0	0	0	0	1	0	0	0	2128	1464	51	5	3147	5	C20orf26	20	20269485	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	124758	20269485	42756035	949	92943											
NAPB	63908	broad.mit.edu	37	chr20	23362046	23362046	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctttagaaaataattaTgtatcttatgtttgtttagc	6	4	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23362046	C	C	23362046	1	2	91	0	1	0	0	0	0	0	0	0	10256	1479	51	5		5	NAPB	20	23362046	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	3092561	23362046	39663474	950	92944											
SUN5	140732	broad.mit.edu	37	chr20	31571788	31571788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcacagaggcagctcacCcatagactcccaccctgcct	7	18	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31571788	A	A	31571788	1	1	91	0	1	0	0	0	0	0	0	0	15512	638	22	2		2	SUN5	20	31571788	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	8209742	31571788	31453732	951	92945											
SUN5	140732	broad.mit.edu	37	chr20	31585496	31585496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaaacatccagaatcctGtgaggccatgagaataagaa	9	7	0	5			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31585496	T	T	31585496	1	4	91	0	1	0	0	0	0	0	0	0	15512	1392	48	3		3	SUN5	20	31585496	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	13708	31585496	31440024	952	92946											
BPIL3	128859	broad.mit.edu	37	chr20	31620940	31620940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttagggcagagggtggtgGggattgctgtgcccaagatc	19	6	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31620940	T	T	31620940	1	4	91	0	1	0	0	0	0	0	0	0	1502	1247	43	2		2	BPIL3	20	31620940	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	35444	31620940	31404580	953	92947											
L3MBTL	26013	broad.mit.edu	37	chr20	42159028	42159028	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caccctgctggctggttcgaGaagacgggccacaagctgca	13	13	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42159028	T	T	42159028	3	4	91	1	0	0	0	0	1	0	0	0	8663	933	33	3	917	3	L3MBTL	20	42159028	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	10538088	42159028	20866492	954	92948											
TOX2	84969	broad.mit.edu	37	chr20	42694687	42694687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccccagccccctgtcctGcccacccccatggcactcca	6	25	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42694687	T	T	42694687	2	4	91	1	0	0	0	0	0	0	0	1	16502	1306	46	3		3	TOX2	20	42694687	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	535659	42694687	20330833	955	92949											
ARFGEF2	10564	broad.mit.edu	37	chr20	47582591	47582591	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcatcctctgtggacttaTtgccatttttactttttcaa	5	9	3	0	rs147041634	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47582591	C	C	47582591	1	2	91	0	1	0	0	0	0	0	0	0	855	1508	52	5		5	ARFGEF2	20	47582591	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	4887904	47582591	15442929	956	92950											
KCNB1	3745	broad.mit.edu	37	chr20	47990102	47990102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctcggagcttcaaaggGttgttagttttcatggaact	12	6	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47990102	T	T	47990102	3	4	91	1	0	0	0	0	1	0	0	0	8082	1252	44	3	585	3	KCNB1	20	47990102	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	407511	47990102	15035418	957	92951											
ZBP1	81030	broad.mit.edu	37	chr20	56179482	56179482	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacccatccccatgccaggTccattcccccaaaactgatt	5	17	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56179482	A	A	56179482	1	1	91	0	1	0	0	0	0	0	0	0	17647	1682	58	5		5	ZBP1	20	56179482	3'UTR	SNP	T	TCGA-17-Z062-01A-01W-0747-08	8189380	56179482	6846038	958	92952											
SLCO4A1	28231	broad.mit.edu	37	chr20	61296406	61296406	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttcttggagtcccagttCagcctgagtgcctcagaagc	11	11	3	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61296406	T	T	61296406	2	4	91	1	0	0	0	0	0	0	0	1	14843	825	29	4		4	SLCO4A1	20	61296406	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5116924	61296406	1729114	959	92953											
COL9A3	1299	broad.mit.edu	37	chr20	61459268	61459268	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcttctgtcacttgtgtgtCctctagggcagacctggtcc	11	12	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61459268	T	T	61459268	1	4	91	0	1	0	0	0	0	0	0	0	3741	870	30	4		4	COL9A3	20	61459268	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	162862	61459268	1566252	960	92954											
GMEB2	26205	broad.mit.edu	37	chr20	62250696	62250696	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccgtccactgcagtgtccgGagttgtcacaaccaccacct	9	16	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62250696	C	C	62250696	3	2	91	1	0	0	0	0	1	0	0	0	6552	1174	41	4	1573	4	GMEB2	20	62250696	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	791428	62250696	774824	961	92955											
TPTE	7179	broad.mit.edu	37	chr21	10969197	10969197	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtggatcatgaggtcaGgagattgagaccatcctggc	16	8	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10969197	A	A	10969197	1	1	91	0	1	0	0	0	0	0	0	0	16554	1015	35	4		4	TPTE	21	10969197	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08		10969197	37160698	962	92956											
NRIP1	8204	broad.mit.edu	37	chr21	16337858	16337858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatacagtacttctggggCactgtgattgtttgcagcat	10	10	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16337858	A	A	16337858	3	1	91	1	0	0	0	0	1	0	0	0	10747	710	25	3	824	3	NRIP1	21	16337858	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5368661	16337858	31792037	963	92957											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212641	28212641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacacttgccgttgataCaccatttcccttctccacag	4	16	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28212641	A	A	28212641	3	1	91	1	0	0	0	0	1	0	0	0	255	478	17	3	1304	3	ADAMTS1	21	28212641	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	11874783	28212641	19917254	964	92958											
BACH1	571	broad.mit.edu	37	chr21	30699198	30699198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttaacagaaaagcctttGtcaggtacagacgtccaaga	10	8	1	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30699198	T	T	30699198	3	4	91	1	0	0	0	0	1	0	0	0	1288	1368	48	3	1059	3	BACH1	21	30699198	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2486557	30699198	17430697	965	92959											
SYNJ1	8867	broad.mit.edu	37	chr21	34015817	34015817	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcagggcccacagcacAgaatgaaaggcaggcacaca	11	11	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34015817	G	G	34015817	1	3	91	0	1	0	0	0	0	0	0	0	15571	203	7	5		5	SYNJ1	21	34015817	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	3316619	34015817	14114078	966	92960											
SON	6651	broad.mit.edu	37	chr21	34924172	34924172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctcaaatgttagcttctGgcaccatggatgctcagatg	9	10	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34924172	T	T	34924172	3	4	91	1	0	0	0	0	1	0	0	0	15040	1348	47	2	2645	2	SON	21	34924172	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	908355	34924172	13205723	967	92961											
SLC5A3	6526	broad.mit.edu	37	chr21	35468722	35468722	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagctcccgggagttaatgAttgtggggaggatatttgtg	15	5	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35468722	T	T	35468722	3	4	91	1	0	0	0	0	1	0	0	0	14780	333	12	5	1227	5	SLC5A3	21	35468722	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	544550	35468722	12661173	968	92962											
TMPRSS2	7113	broad.mit.edu	37	chr21	42870034	42870034	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggccaggaaggtaataaTtaaccacttactgagttcaa	8	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42870034	A	A	42870034	1	1	91	0	1	0	0	0	0	0	0	0	16370	1508	52	5		5	TMPRSS2	21	42870034	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	7401312	42870034	5259861	969	92963											
PRAME	23532	broad.mit.edu	37	chr22	22892503	22892503	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtacatttttctttcgctTcactttctcaatgaggtagg	7	8	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22892503	A	A	22892503	4	1	91	1	0	0	0	0	0	1	0	0	12525	1792	62	5	939	5	PRAME	22	22892503	Nonsense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08		22892503	28412063	970	92964											
BCR	613	broad.mit.edu	37	chr22	23541512	23541512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgggtcccgccatgcctGtgtcatctcctggcttcccc	10	17	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23541512	T	T	23541512	1	4	91	0	1	0	0	0	0	0	0	0	1393	1392	48	3		3	BCR	22	23541512	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	649009	23541512	27763054	971	92965											
SGSM1	129049	broad.mit.edu	37	chr22	25301259	25301259	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtagaatgtggctccagccAggtgctctgaaggcctgtct	13	10	2	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25301259	T	T	25301259	1	4	91	0	1	0	0	0	0	0	0	0	14335	203	7	5		5	SGSM1	22	25301259	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1759747	25301259	26003307	972	92966											
SEZ6L	23544	broad.mit.edu	37	chr22	26688944	26688944	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagaggccagaacccgggGagcctgggcctgacatggcc	15	15	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26688944	T	T	26688944	4	4	91	1	0	0	0	0	0	1	0	0	14256	1175	41	3	673	3	SEZ6L	22	26688944	Nonsense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1387685	26688944	24615622	973	92967											
SEZ6L	23544	broad.mit.edu	37	chr22	26771488	26771489	+	Intron	DNP	CA	AG	AG													gaactgggcagttgggcactCactgggagtcagctacctgg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	26771489	AG	AG	26771488	1	1	91	0	1	0	0	0	0	0	0	0	14256	841	29	3		3	SEZ6L	22	26771488	Intron	DNP	CA	TCGA-17-Z062-01A-01W-0747-08	82544	26771488	24533078	974	92968											
LIF	3976	broad.mit.edu	37	chr22	30639730	30639730	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggaagacatccttaccCgaggtgtcagggccgtaggt	13	10	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30639730	A	A	30639730	2	1	91	1	0	0	0	0	0	0	0	1	8851	639	23	1		1	LIF	22	30639730	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	3868242	30639730	20664836	975	92969											
MCM5	4174	broad.mit.edu	37	chr22	35812721	35812721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggatgagacgaagggggagGacaacattgacttcatgccc	15	8	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35812721	T	T	35812721	3	4	91	1	0	0	0	0	1	0	0	0	9483	1174	41	3	1546	3	MCM5	22	35812721	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5172991	35812721	15491845	976	92970											
MICALL1	85377	broad.mit.edu	37	chr22	38333720	38333720	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattacaggtgtgagccacCacgcccagcttaactgctgc	11	13	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38333720	T	T	38333720	1	4	91	0	1	0	0	0	0	0	0	0	9666	609	21	4		4	MICALL1	22	38333720	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	2520999	38333720	12970846	977	92971											
KDELR3	11015	broad.mit.edu	37	chr22	38875737	38875738	+	Frame_Shift_Del	DEL	AC	-	-													cctttccttccttgaaaactAcagtttcactctgctggagg							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38875738	-	-	38875737	7	5	91	1	0	1	0	1	0	0	0	0	8191	391	14	0	342	0	KDELR3	22	38875737	Frame_Shift_Del	DEL	AC	TCGA-17-Z062-01A-01W-0747-08	542017	38875737	12428829	978	92972											
CACNA1I	8911	broad.mit.edu	37	chr22	40069095	40069095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcattgcccgaggtgagggGcaaggggtgggacagggaac	20	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40069095	T	T	40069095	1	4	91	0	1	0	0	0	0	0	0	0	2572	1218	42	3		3	CACNA1I	22	40069095	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1193358	40069095	11235471	979	92973											
GRAP2	9402	broad.mit.edu	37	chr22	40365465	40365465	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggcattgtggcaccggCttgggcagtgaaatgaatgc	16	7	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40365465	A	A	40365465	2	1	91	1	0	0	0	0	0	0	0	1	6820	784	28	3		3	GRAP2	22	40365465	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	296370	40365465	10939101	980	92974											
TNRC6B	23112	broad.mit.edu	37	chr22	40661743	40661743	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaagggaacaaaatgacAtctggggtctctcagggaga	15	6	3	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40661743	G	G	40661743	2	3	91	1	0	0	0	0	0	0	0	1	16464	204	8	5		5	TNRC6B	22	40661743	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	296278	40661743	10642823	981	92975											
SMC1B	27127	broad.mit.edu	37	chr22	45782818	45782819	+	Frame_Shift_Del	DEL	CA	-	-													ctcacaaacaagaccatttcCacacacaaactgaatcactt							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45782819	-	-	45782818	7	5	91	1	0	1	0	1	0	0	0	0	14896	603	21	0	1927	0	SMC1B	22	45782818	Frame_Shift_Del	DEL	CA	TCGA-17-Z062-01A-01W-0747-08	5121075	45782818	5521748	982	92976											
ALG12	79087	broad.mit.edu	37	chr22	50297751	50297751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtcctgcccagggcccCcacatcgccctgtcccccgc	11	21	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50297751	A	A	50297751	1	1	91	0	1	0	0	0	0	0	0	0	514	638	22	2		2	ALG12	22	50297751	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	4514933	50297751	1006815	983	92977											
MOV10L1	54456	broad.mit.edu	37	chr22	50553740	50553740	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatacttctaggttgggtGttataaaaggtactcctttg	10	6	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50553740	A	A	50553740	1	1	91	0	1	0	0	0	0	0	0	0	9813	1392	48	4		4	MOV10L1	22	50553740	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	255989	50553740	750826	984	92978											
SBF1	6305	broad.mit.edu	37	chr22	50897899	50897899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggacgcaggaggtacCtggagaaggtgcgttctggg	20	7	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50897899	A	A	50897899	3	1	91	1	0	0	0	0	1	0	0	0	13970	695	24	2	2053	2	SBF1	22	50897899	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	344159	50897899	406667	985	92979											
ARSF	416	broad.mit.edu	37	chrX	2986173	2986173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggtaaagccatatactgCattgtgagcacattgaatct	9	7	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2986173	A	A	2986173	1	1	91	0	1	0	0	0	0	0	0	0	995	725	25	3		3	ARSF	23	2986173	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08		2986173	152284387	986	92980											
MXRA5	25878	broad.mit.edu	37	chrX	3240108	3240108	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggtattaactgtgttatcCacccaagctgtaggaaccag	11	9	0	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3240108	G	G	3240108	2	3	91	1	0	0	0	0	0	0	0	1	10097	581	21	4		4	MXRA5	23	3240108	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	253935	3240108	152030452	987	92981											
HCCS	3052	broad.mit.edu	37	chrX	11136755	11136755	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgcgtaagtatgtttgaGatcttaaatgtttcaagcat	9	5	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11136755	T	T	11136755	1	4	91	0	1	0	0	0	0	0	0	0	7056	957	33	3		3	HCCS	23	11136755	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	7896647	11136755	144133805	988	92982											
ARHGAP6	395	broad.mit.edu	37	chrX	11314843	11314843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctctctcttctcttcCttcactctctcccttcctct	0	20	7	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11314843	A	A	11314843	1	1	91	0	1	0	0	0	0	0	0	0	889	696	24	2		2	ARHGAP6	23	11314843	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	178088	11314843	143955717	989	92983											
CTPS2	56474	broad.mit.edu	37	chrX	16711541	16711541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaaattctctcttttcgCcttaaactggaattgtctaa	5	9	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16711541	A	A	16711541	3	1	91	1	0	0	0	0	1	0	0	0	4057	739	26	3	1308	3	CTPS2	23	16711541	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	5396698	16711541	138559019	990	92984											
CNKSR2	22866	broad.mit.edu	37	chrX	21627541	21627541	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgagagtgagaggatgcAagtgctaaatggaaatgggg	17	3	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21627541	T	T	21627541	3	4	91	1	0	0	0	0	1	0	0	0	3639	130	5	5	2576	5	CNKSR2	23	21627541	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08	4916000	21627541	133643019	991	92985											
EIF2S3	1968	broad.mit.edu	37	chrX	24094891	24094891	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacaatcaagccaacagtaGatgatgactgaagaatacca	8	8	1	6			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24094891	T	T	24094891	3	4	91	1	0	0	0	0	1	0	0	0	5051	942	33	3	1454	3	EIF2S3	23	24094891	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	2467350	24094891	131175669	992	92986											
FAM47A	158724	broad.mit.edu	37	chrX	34149563	34149563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccggccctcacaaggaGcccgtgcgtcttccagcttc	9	18	3	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34149563	T	T	34149563	3	4	91	1	0	0	0	0	1	0	0	0	5620	971	34	3	1546	3	FAM47A	23	34149563	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	10054672	34149563	121120997	993	92987											
FAM47B	170062	broad.mit.edu	37	chrX	34961677	34961677	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggaacctccagagactcgCgcatctcatctccgcgtgga	10	16	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34961677	G	G	34961677	2	3	91	1	0	0	0	0	0	0	0	1	5621	755	27	4		4	FAM47B	23	34961677	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	812114	34961677	120308883	994	92988											
CXorf59	286464	broad.mit.edu	37	chrX	36156643	36156643	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttcttttgatagcttgctCatttataatattgctttgtt	5	5	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36156643	A	A	36156643	1	1	91	0	1	0	0	0	0	0	0	0	4148	841	29	3		3	CXorf59	23	36156643	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1194966	36156643	119113917	995	92989											
CYBB	1536	broad.mit.edu	37	chrX	37668873	37668873	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagatgtgatcacaggcctGaaacaaaagactttgtatgg	10	6	1	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37668873	T	T	37668873	2	4	91	1	0	0	0	0	0	0	0	1	4166	1277	45	3		3	CYBB	23	37668873	Silent	SNP	G	TCGA-17-Z062-01A-01W-0747-08	1512230	37668873	117601687	996	92990											
GAGE10	643832	broad.mit.edu	37	chrX	49173798	49173798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaggcatgcacattgtaGggtgtctgtttccacagtat	10	8	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49173798	T	T	49173798	1	4	91	0	1	0	0	0	0	0	0	0	6247	1015	35	2		2	GAGE10	23	49173798	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	11504925	49173798	106096762	997	92991											
MAGED2	10916	broad.mit.edu	37	chrX	54841708	54841708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggatcccaaggaatggGcagctcagtaccgagaggcg	15	9	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54841708	T	T	54841708	3	4	91	1	0	0	0	0	1	0	0	0	9276	1203	42	3	1456	3	MAGED2	23	54841708	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	5667910	54841708	100428852	998	92992											
HEPH	9843	broad.mit.edu	37	chrX	65392106	65392106	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttgtcctaaacaaagatAgtcactttttggtcagtatc	7	7	2	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65392106	C	C	65392106	1	2	91	0	1	0	0	0	0	0	0	0	7121	435	15	5		5	HEPH	23	65392106	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	10550398	65392106	89878454	999	92993											
ABCB7	22	broad.mit.edu	37	chrX	74318689	74318690	+	Intron	DEL	AA	-	-													aaagttggtcatgctaccccAaaagtgatttacaccaggcc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74318690	-	-	74318689	6	5	91	0	1	1	0	1	0	0	0	0	46	145	5	0		0	ABCB7	23	74318689	Intron	DEL	AA	TCGA-17-Z062-01A-01W-0747-08	8926583	74318689	80951871	1000	92994											
RPS6KA6	27330	broad.mit.edu	37	chrX	83374966	83374966	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttactacttcaggagccataTactctactgtaccacaaaat	4	11	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83374966	A	A	83374966	3	1	91	1	0	0	0	0	1	0	0	0	13766	1406	49	5	1577	5	RPS6KA6	23	83374966	Missense_Mutation	SNP	T	TCGA-17-Z062-01A-01W-0747-08	9056277	83374966	71895594	1001	92995											
POF1B	79983	broad.mit.edu	37	chrX	84622798	84622798	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaaacaaaagggagttcAgaaattatttgaaagtctta	9	3	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84622798	T	T	84622798	1	4	91	0	1	0	0	0	0	0	0	0	12277	203	7	5		5	POF1B	23	84622798	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	1247832	84622798	70647762	1002	92996											
PCDH11X	27328	broad.mit.edu	37	chrX	91133196	91133196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatggtggtagagtatcaCgttcttcaagtgccaaagta	12	6	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91133196	A	A	91133196	3	1	91	1	0	0	0	0	1	0	0	0	11602	536	19	3	1963	3	PCDH11X	23	91133196	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6510398	91133196	64137364	1003	92997											
COL4A5	1287	broad.mit.edu	37	chrX	107910360	107910360	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttttgttttgtactctgaCaggtcaaccaggctttggaa	10	7	2	1	rs104886382		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107910360	T	T	107910360	1	4	91	0	1	0	0	0	0	0	0	0	3726	493	17	4		4	COL4A5	23	107910360	Intron	SNP	C	TCGA-17-Z062-01A-01W-0747-08	16777164	107910360	47360200	1004	92998											
COL4A5	1287	broad.mit.edu	37	chrX	107930917	107930917	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaaagagcccacggtcaAgacttgggtgagataatcaa	10	7	2	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107930917	G	G	107930917	2	3	91	1	0	0	0	0	0	0	0	1	3726	69	3	5		5	COL4A5	23	107930917	Silent	SNP	A	TCGA-17-Z062-01A-01W-0747-08	20557	107930917	47339643	1005	92999											
DCX	1641	broad.mit.edu	37	chrX	110653260	110653260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaccacccactatttaaatTaccttcctccagttcatcca	1	17	1	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110653260	A	A	110653260	1	1	91	0	1	0	0	0	0	0	0	0	4351	1769	61	5		5	DCX	23	110653260	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	2722343	110653260	44617300	1006	93000											
TRPC5	7224	broad.mit.edu	37	chrX	111195283	111195283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttacctgcttctctccGctgggccgcctgtagctgag	10	15	2	1	rs143012451	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111195283	T	T	111195283	3	4	91	1	0	0	0	0	1	0	0	0	16707	1078	38	3	2595	3	TRPC5	23	111195283	Missense_Mutation	SNP	G	TCGA-17-Z062-01A-01W-0747-08	542023	111195283	44075277	1007	93001											
LHFPL1	340596	broad.mit.edu	37	chrX	111914413	111914413	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcattgaagctggcatagCgcccacattcttccaccatg	9	13	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111914413	G	G	111914413	3	3	91	1	0	0	0	0	1	0	0	0	8836	768	27	4	468	4	LHFPL1	23	111914413	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	719130	111914413	43356147	1008	93002											
KIAA1210	57481	broad.mit.edu	37	chrX	118221794	118221794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaaatttgaggacagttgCtggactttatttcccacagt	9	8	0	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118221794	A	A	118221794	3	1	91	1	0	0	0	0	1	0	0	0	8284	796	28	3	1746	3	KIAA1210	23	118221794	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	6307381	118221794	37048766	1009	93003											
KIAA1210	57481	broad.mit.edu	37	chrX	118242279	118242279	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactcagctgcccatgcgcTgaacaattccactttgttac	7	13	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118242279	A	A	118242279	1	1	91	0	1	0	0	0	0	0	0	0	8284	1595	55	5		5	KIAA1210	23	118242279	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	20485	118242279	37028281	1010	93004											
SEPT6	23157	broad.mit.edu	37	chrX	118771148	118771148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacaaagtcgcagtgggcCtcgttttcaactgcatagca	9	11	2	0			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118771148	A	A	118771148	3	1	91	1	0	0	0	0	1	0	0	0	14181	680	24	2	544	2	SEPT6	23	118771148	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	528869	118771148	36499412	1011	93005											
FGF13	2258	broad.mit.edu	37	chrX	137717584	137717584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaataagtatatttagtaGcataatccatagttcccaca	4	7	0	0	rs59397905		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137717584	T	T	137717584	1	4	91	0	1	0	0	0	0	0	0	0	5899	986	34	3		3	FGF13	23	137717584	Intron	SNP	G	TCGA-17-Z062-01A-01W-0747-08	18946436	137717584	17552976	1012	93006											
F9	2158	broad.mit.edu	37	chrX	138613041	138613041	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttttttaaaatacattgagTatgcttgccttttagatata	5	5	0	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138613041	A	A	138613041	1	1	91	0	1	0	0	0	0	0	0	0	5397	1653	57	5		5	F9	23	138613041	Intron	SNP	T	TCGA-17-Z062-01A-01W-0747-08	895457	138613041	16657519	1013	93007											
F9	2158	broad.mit.edu	37	chrX	138619367	138619367	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatacccttcagatgcagAgcatagaatagaaaatcttt	6	7	2	4			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138619367	C	C	138619367	1	2	91	0	1	0	0	0	0	0	0	0	5397	319	11	5		5	F9	23	138619367	Intron	SNP	A	TCGA-17-Z062-01A-01W-0747-08	6326	138619367	16651193	1014	93008											
MAGEC1	9947	broad.mit.edu	37	chrX	140993918	140993919	+	Nonsense_Mutation	DNP	CC	AA	AA													tgtgagcccctcctcctcctCcactttactgagtcttttcc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140993919	AA	AA	140993918	4	1	91	1	0	0	0	0	0	1	0	0	9272	855	30	3	734	3	MAGEC1	23	140993918	Nonsense_Mutation	DNP	CC	TCGA-17-Z062-01A-01W-0747-08	2374551	140993918	14276642	1015	93009											
SPANXN2	494119	broad.mit.edu	37	chrX	142803866	142803866	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtcccagagctctggccctCcctatgtataccttcctggt	8	15	1	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142803866	T	T	142803866	1	4	91	0	1	0	0	0	0	0	0	0	15107	870	30	4		4	SPANXN2	23	142803866	5'UTR	SNP	C	TCGA-17-Z062-01A-01W-0747-08	1809948	142803866	12466694	1016	93010											
GABRE	2564	broad.mit.edu	37	chrX	151131056	151131058	+	In_Frame_Del	DEL	GTT	-	-													acaagagactcaaaggtgtcGttgtaacagaggcgttcgtc							TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151131058	-	-	151131056	7	5	91	1	0	1	0	1	0	0	0	0	6230	1136	40	0	1142	0	GABRE	23	151131056	In_Frame_Del	DEL	GTT	TCGA-17-Z062-01A-01W-0747-08	8327190	151131056	4139504	1017	93011											
PCDH11Y	83259	broad.mit.edu	37	chrY	4968083	4968083	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaactggtgcgcaaaagcAttgaagcaccagtgacccca	10	11	0	3			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4968083	T	T	4968083	3	4	91	1	0	0	0	0	1	0	0	0	11603	217	8	5	2506	5	PCDH11Y	24	4968083	Missense_Mutation	SNP	A	TCGA-17-Z062-01A-01W-0747-08		4968083	54405483	1018	93012											
PCDH11Y	83259	broad.mit.edu	37	chrY	5605402	5605402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgatgcctgctggatgCcggcatctctggatcattcc	10	12	3	1			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5605402	A	A	5605402	3	1	91	1	0	0	0	0	1	0	0	0	11603	739	26	3	3518	3	PCDH11Y	24	5605402	Missense_Mutation	SNP	C	TCGA-17-Z062-01A-01W-0747-08	637319	5605402	53768164	1019	93013											
KDM5D	8284	broad.mit.edu	37	chrY	21894530	21894530	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttcaggaaggggtggtaaCaagcagaagatgtggtaatt	14	3	1	2			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21894530	T	T	21894530	2	4	91	1	0	0	0	0	0	0	0	1	8206	477	17	4		4	KDM5D	24	21894530	Silent	SNP	C	TCGA-17-Z062-01A-01W-0747-08	16289128	21894530	37479036	1020	93014											
CPSF3L	54973	broad.mit.edu	37	chr1	1254544	1254544	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgtccccacggtgctGgacgcaagagtgaggtgggg	18	10	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1254544	A	A	1254544	1	1	92	0	1	0	0	0	0	0	0	0	3859	1363	47	4		4	CPSF3L	1	1254544	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01		1254544	247996077	1	93015											
TAS1R2	80834	broad.mit.edu	37	chr1	19168478	19168479	+	Intron	INS	-	A	A													ttttggggtggaaactgtagINSaaaaaaaaaaaaaaactctc					rs35542368		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19168479	A	A	19168478	6	5	92	0	1	1	1	0	0	0	0	0	15682	957	33	0		0	TAS1R2	1	19168478	Intron	INS	-	TCGA-35-3615-01A-01D-1040-01	17913934	19168478	230082143	2	93016											
AIM1L	55057	broad.mit.edu	37	chr1	26672884	26672884	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtccatggctctggaagtTcttggagccagctgtatccc	13	11	2	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26672884	A	A	26672884	1	1	92	0	1	0	0	0	0	0	0	0	431	1798	62	5		5	AIM1L	1	26672884	5'Flank	SNP	T	TCGA-35-3615-01A-01D-1040-01	7504406	26672884	222577737	3	93017											
RAD54L	8438	broad.mit.edu	37	chr1	46725544	46725544	+	Intron	DEL	G	-	-													agagggtcatatgggagctcGggaaaggttatgtgaaggac							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46725544	-	-	46725544	6	5	92	0	1	1	0	1	0	0	0	0	13101	1131	39	0		0	RAD54L	1	46725544	Intron	DEL	G	TCGA-35-3615-01A-01D-1040-01	20052660	46725544	202525077	4	93018											
C8A	731	broad.mit.edu	37	chr1	57349288	57349288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggcagccctttattggtGggtgtaggtgtatcccactc	13	11	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57349288	T	T	57349288	2	4	92	1	0	0	0	0	0	0	0	1	2441	1335	47	2		2	C8A	1	57349288	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	10623744	57349288	191901333	5	93019											
RPE65	6121	broad.mit.edu	37	chr1	68895402	68895402	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaacagaatttgattgcaGacctgaagctgattttctca	8	7	1	6			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68895402	T	T	68895402	1	4	92	0	1	0	0	0	0	0	0	0	13656	957	33	3		3	RPE65	1	68895402	3'UTR	SNP	G	TCGA-35-3615-01A-01D-1040-01	11546114	68895402	180355219	6	93020											
ABCA4	24	broad.mit.edu	37	chr1	94476317	94476317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtccagttctggatgccCtgagctgcccactggcccag	12	14	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94476317	A	A	94476317	1	1	92	0	1	0	0	0	0	0	0	0	34	696	24	2		2	ABCA4	1	94476317	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	25580915	94476317	154774304	7	93021											
CSF1	1435	broad.mit.edu	37	chr1	110465719	110465719	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgccccgctctgggaaagCtgtgctggaggctagtgact	14	11	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110465719	T	T	110465719	1	4	92	0	1	0	0	0	0	0	0	0	3965	812	28	4		4	CSF1	1	110465719	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	15989402	110465719	138784902	8	93022											
RSBN1	54665	broad.mit.edu	37	chr1	114309099	114309099	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaagaaaaaagttacgtGagactttaaaatatgtaata	7	2	0	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114309099	C	C	114309099	1	2	92	0	1	0	0	0	0	0	0	0	13807	1305	45	4		4	RSBN1	1	114309099	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	3843380	114309099	134941522	9	93023											
HMGCS2	3158	broad.mit.edu	37	chr1	120299834	120299834	+	Intron	SNP	G	A	A													gtggtctagacttaaggcatGaagaagcctccttcttgctc							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120299834	A	A	120299834	1	1	92	0	1	0	0	0	0	0	0	0	7300	1305	45	4		4	HMGCS2	1	120299834	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	5990735	120299834	128950787	10	93024	417	2									
HMGCS2	3158	broad.mit.edu	37	chr1	120299837	120299837	+	Intron	SNP	G	A	A													gtctagacttaaggcatgaaGaagcctccttcttgctcaca							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120299837	A	A	120299837	1	1	92	0	1	0	0	0	0	0	0	0	7300	957	33	4		4	HMGCS2	1	120299837	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	3	120299837	128950784	11	93025	417	2									
LOC200030	200030	broad.mit.edu	37	chr1	148343884	148343884	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatattgcaacagagatttCtgagacaatgttctcaagga	8	6	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148343884	T	T	148343884	1	4	92	0	1	0	0	0	0	0	0	0	8950	928	32	4		4	LOC200030	1	148343884	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	28044047	148343884	100906737	12	93026											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	92	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-35-3615-01A-01D-1040-01	3398676	151742560	97508061	13	93027											
SH2D2A	9047	broad.mit.edu	37	chr1	156779054	156779054	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagggtgcccaagggtggCgggtaggccctcatcttcca	15	12	2	0	rs147765972		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156779054	T	T	156779054	3	4	92	1	0	0	0	0	1	0	0	0	14345	768	27	4	234	4	SH2D2A	1	156779054	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	5036494	156779054	92471567	14	93028											
SPTA1	6708	broad.mit.edu	37	chr1	158590009	158590009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttccagcacctccactGttaaccaggtataagggctg	8	13	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158590009	T	T	158590009	3	4	92	1	0	0	0	0	1	0	0	0	15234	1377	48	3	927	3	SPTA1	1	158590009	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	1810955	158590009	90660612	15	93029											
ADAMTS4	9507	broad.mit.edu	37	chr1	161166644	161166644	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgccaccaccagtgtctcCacaaatctactcagtgaagc	6	15	4	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161166644	T	T	161166644	2	4	92	1	0	0	0	0	0	0	0	1	268	581	21	4		4	ADAMTS4	1	161166644	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	2576635	161166644	88083977	16	93030											
SELP	6403	broad.mit.edu	37	chr1	169580746	169580746	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccctcacaggttggcaaGggtgcagaccagtgtccaga	12	12	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169580746	T	T	169580746	2	4	92	1	0	0	0	0	0	0	0	1	14132	987	35	2		2	SELP	1	169580746	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	8414102	169580746	79669875	17	93031											
PAPPA2	60676	broad.mit.edu	37	chr1	176526072	176526072	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgccaagtgtggaagaggcGggcggaagatgggcagggag	21	6	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176526072	C	C	176526072	3	2	92	1	0	0	0	0	1	0	0	0	11527	1116	39	4	616	4	PAPPA2	1	176526072	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	6945326	176526072	72724549	18	93032											
CACNA1E	777	broad.mit.edu	37	chr1	181708376	181708376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcgttggcgcattggtgGcctttgctctggcgtaagtg	16	8	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181708376	T	T	181708376	3	4	92	1	0	0	0	0	1	0	0	0	2568	1203	42	3	3804	3	CACNA1E	1	181708376	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	5182304	181708376	67542245	19	93033											
ZNF648	127665	broad.mit.edu	37	chr1	182026337	182026337	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcggcgccgccgcgcgtcTccgcggggctcagcggcttg	18	16	2	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182026337	C	C	182026337	3	2	92	1	0	0	0	0	1	0	0	0	18190	1551	54	5	901	5	ZNF648	1	182026337	Missense_Mutation	SNP	T	TCGA-35-3615-01A-01D-1040-01	317961	182026337	67224284	20	93034											
PTGS2	5743	broad.mit.edu	37	chr1	186643668	186643668	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaattgaggcagtgttgatGatttgaaaacccacttctcc	9	8	1	5	rs139087930		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186643668	A	A	186643668	2	1	92	1	0	0	0	0	0	0	0	1	12862	1280	45	4		4	PTGS2	1	186643668	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	4617331	186643668	62606953	21	93035											
LRRN2	10446	broad.mit.edu	37	chr1	204589053	204589053	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagggaacatgccagggtAccacgggcacagcggcagtg	17	11	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204589053	G	G	204589053	3	3	92	1	0	0	0	0	1	0	0	0	9122	391	14	5	2077	5	LRRN2	1	204589053	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	17945385	204589053	44661568	22	93036											
C1orf116	79098	broad.mit.edu	37	chr1	207200842	207200842	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagagtattacgtacagaTccagagcgggtggaggtgct	17	6	0	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207200842	A	A	207200842	2	1	92	1	0	0	0	0	0	0	0	1	2009	1422	50	5		5	C1orf116	1	207200842	Silent	SNP	T	TCGA-35-3615-01A-01D-1040-01	2611789	207200842	42049779	23	93037											
PTPN14	5784	broad.mit.edu	37	chr1	214538102	214538102	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggggagcggaagagaactGatggtgagtgtgtgtgtgtg	22	2	0	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214538102	A	A	214538102	1	1	92	0	1	0	0	0	0	0	0	0	12889	1305	45	4		4	PTPN14	1	214538102	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	7337260	214538102	34712519	24	93038											
USH2A	7399	broad.mit.edu	37	chr1	215807951	215807951	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaacaagatcaagcccagCatcgccattaacactatgaa	6	13	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215807951	T	T	215807951	3	4	92	1	0	0	0	0	1	0	0	0	17162	710	25	4	473	4	USH2A	1	215807951	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	1269849	215807951	33442670	25	93039											
EPRS	2058	broad.mit.edu	37	chr1	220154634	220154634	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttccatactcccaatcctTtgaaaataaaaacaaaatgt	3	9	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220154634	C	C	220154634	1	2	92	0	1	0	0	0	0	0	0	0	5233	1856	64	5		5	EPRS	1	220154634	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	4346683	220154634	29095987	26	93040											
HLX	3142	broad.mit.edu	37	chr1	221055574	221055574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcgttcatggtcgcgcGctgtgttctccaacctgcag	13	12	2	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221055574	T	T	221055574	3	4	92	1	0	0	0	0	1	0	0	0	7283	1087	38	3	851	3	HLX	1	221055574	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	900940	221055574	28195047	27	93041											
ACTN2	88	broad.mit.edu	37	chr1	236849947	236849947	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccgagcccctcgcgcccCgccgcagccccggccaaccg	11	24	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236849947	A	A	236849947	1	1	92	0	1	0	0	0	0	0	0	0	205	667	23	1		1	ACTN2	1	236849947	5'UTR	SNP	C	TCGA-35-3615-01A-01D-1040-01	15794373	236849947	12400674	28	93042											
RYR2	6262	broad.mit.edu	37	chr1	237608579	237608579	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgtaacagcttcacagtcCcctgtacctgccttttgatt	6	13	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237608579	G	G	237608579	1	3	92	0	1	0	0	0	0	0	0	0	13880	638	22	4		4	RYR2	1	237608579	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	758632	237608579	11642042	29	93043											
FMN2	56776	broad.mit.edu	37	chr1	240421306	240421306	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatactaatgtctagccttcAtttagatatgaaagacatac	5	7	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240421306	G	G	240421306	3	3	92	1	0	0	0	0	1	0	0	0	6008	217	8	5	4153	5	FMN2	1	240421306	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	2812727	240421306	8829315	30	93044											
OR2W3	343171	broad.mit.edu	37	chr1	248059823	248059823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctggggaagagagagctagGaaaggagtaaaggcatctcc	15	6	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059823	T	T	248059823	3	4	92	1	0	0	0	0	1	0	0	0	11127	1174	41	3	937	3	OR2W3	1	248059823	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	7638517	248059823	1190798	31	93045											
OR2T4	127074	broad.mit.edu	37	chr1	248525231	248525231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccaagatgctcctggacCaggtcatgggtgtgaataag	13	9	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525231	A	A	248525231	3	1	92	1	0	0	0	0	1	0	0	0	11121	595	21	2	351	2	OR2T4	1	248525231	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	465408	248525231	725390	32	93046											
GREB1	9687	broad.mit.edu	37	chr2	11720872	11720872	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actaaacgcagcaatgggtcCggctgttttcaacggcaaag	11	10	1	0	rs148901217		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11720872	T	T	11720872	3	4	92	1	0	0	0	0	1	0	0	0	6826	652	23	4	837	4	GREB1	2	11720872	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01		11720872	231478501	33	93047											
DNMT3A	1788	broad.mit.edu	37	chr2	25459873	25459873	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcacagtggatgccaacgGcctaggaggcagaagagaga	14	8	1	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25459873	A	A	25459873	3	1	92	1	0	0	0	0	1	0	0	0	4716	1217	42	4	340	4	DNMT3A	2	25459873	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	13739001	25459873	217739500	34	93048											
REG1B	5968	broad.mit.edu	37	chr2	79314691	79314691	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaccttggctcagagacagGaacatcagggaggagatcag	13	9	4	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79314691	C	C	79314691	3	2	92	1	0	0	0	0	1	0	0	0	13319	1165	41	4	472	4	REG1B	2	79314691	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	53854818	79314691	163884682	35	93049											
IL1R2	7850	broad.mit.edu	37	chr2	102641036	102641036	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggtgtttctgggaaccGgcacacccttaaccaccatg	10	12	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102641036	A	A	102641036	3	1	92	1	0	0	0	0	1	0	0	0	7729	1116	39	4	815	4	IL1R2	2	102641036	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	23326345	102641036	140558337	36	93050											
SULT1C3	442038	broad.mit.edu	37	chr2	108881397	108881397	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaatgaagcaaaacccaatGaccaactataccactttgcc	5	12	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108881397	T	T	108881397	3	4	92	1	0	0	0	0	1	0	0	0	15496	1290	45	3	760	3	SULT1C3	2	108881397	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	6240361	108881397	134317976	37	93051											
DPP10	57628	broad.mit.edu	37	chr2	116497337	116497337	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactcctgcattctcacatCgcccactggtggtcaccaga	8	15	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116497337	G	G	116497337	3	3	92	1	0	0	0	0	1	0	0	0	4767	874	31	4	925	4	DPP10	2	116497337	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	7615940	116497337	126702036	38	93052											
LRP1B	53353	broad.mit.edu	37	chr2	141055419	141055419	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattccggctggcagtggcAgtaaggctggtttccagcag	15	9	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141055419	T	T	141055419	3	4	92	1	0	0	0	0	1	0	0	0	9042	188	7	5	906	5	LRP1B	2	141055419	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	24558082	141055419	102143954	39	93053											
LRP1B	53353	broad.mit.edu	37	chr2	141946049	141946049	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctccagatcaatcagggtGacacatacagaaccgttgga	10	10	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141946049	T	T	141946049	2	4	92	1	0	0	0	0	0	0	0	1	9042	1277	45	3		3	LRP1B	2	141946049	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	890630	141946049	101253324	40	93054											
BAZ2B	29994	broad.mit.edu	37	chr2	160284797	160284797	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttaataggcaccaaatgtAcattatttggtgaaaagtat	8	5	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160284797	G	G	160284797	1	3	92	0	1	0	0	0	0	0	0	0	1337	406	14	5		5	BAZ2B	2	160284797	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	18338748	160284797	82914576	41	93055											
MYO3B	140469	broad.mit.edu	37	chr2	171399378	171399378	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttttctattattattttCaagtcttttaaaattattat	2	3	3	0	rs2355886		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171399378	T	T	171399378	1	4	92	0	1	0	0	0	0	0	0	0	10171	841	29	4		4	MYO3B	2	171399378	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	11114581	171399378	71799995	42	93056											
TTN	7273	broad.mit.edu	37	chr2	179407873	179407873	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcattttgtgcccttattCtaaataagtattgttcacct	4	9	3	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179407873	T	T	179407873	3	4	92	1	0	0	0	0	1	0	0	0	16861	913	32	4	11216	4	TTN	2	179407873	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	8008495	179407873	63791500	43	93057											
IGFBP5	3488	broad.mit.edu	37	chr2	217542746	217542746	+	Intron	DEL	A	-	-													cactaagtggttaacggtggAaaccttaggcacttgcccaa							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	217542746	-	-	217542746	6	5	92	0	1	1	0	1	0	0	0	0	7652	261	9	0		0	IGFBP5	2	217542746	Intron	DEL	A	TCGA-35-3615-01A-01D-1040-01	38134873	217542746	25656627	44	93058											
FARSB	10056	broad.mit.edu	37	chr2	223489197	223489197	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcaagattttctggagtttCtctgaaaaaggaatgaacaa	10	5	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223489197	G	G	223489197	3	3	92	1	0	0	0	0	1	0	0	0	5737	927	32	4	829	4	FARSB	2	223489197	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	5946451	223489197	19710176	45	93059											
DOCK10	55619	broad.mit.edu	37	chr2	225672559	225672559	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcaataggcttgtcggTttcatatgcatttaatgcag	8	6	2	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225672559	G	G	225672559	1	3	92	0	1	0	0	0	0	0	0	0	4725	1740	60	5		5	DOCK10	2	225672559	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	2183362	225672559	17526814	46	93060											
NEU2	4759	broad.mit.edu	37	chr2	233897387	233897387	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccccccagccccatggcGtcccttcctgtcctgcagaa	7	21	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233897387	A	A	233897387	2	1	92	1	0	0	0	0	0	0	0	1	10437	1132	40	4		4	NEU2	2	233897387	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	8224828	233897387	9301986	47	93061											
ANO7	50636	broad.mit.edu	37	chr2	242141661	242141661	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacgagaagaaaaacctgcTtgggatccaccagctgctgg	11	12	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242141661	C	C	242141661	3	2	92	1	0	0	0	0	1	0	0	0	702	1609	56	5	929	5	ANO7	2	242141661	Missense_Mutation	SNP	T	TCGA-35-3615-01A-01D-1040-01	8244274	242141661	1057712	48	93062											
ANO7	50636	broad.mit.edu	37	chr2	242151392	242151392	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctccttcttttaaatatCtggatgatatggccttttcc	6	9	3	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242151392	A	A	242151392	1	1	92	0	1	0	0	0	0	0	0	0	702	928	32	3		3	ANO7	2	242151392	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	9731	242151392	1047981	49	93063											
XYLB	9942	broad.mit.edu	37	chr3	38454427	38454427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttttctgcccttctagGtctacgaggcccttctcccc	7	16	4	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38454427	T	T	38454427	3	4	92	1	0	0	0	0	1	0	0	0	17589	1275	44	3	1608	3	XYLB	3	38454427	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01		38454427	159568003	50	93064											
SCN10A	6336	broad.mit.edu	37	chr3	38753577	38753577	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaagtccccacatagcatCttctgggaacctagactctc	7	14	3	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38753577	T	T	38753577	1	4	92	0	1	0	0	0	0	0	0	0	14025	928	32	4		4	SCN10A	3	38753577	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	299150	38753577	159268853	51	93065											
ENTPD3	956	broad.mit.edu	37	chr3	40433722	40433722	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattccaaaaccatgagttaGaagagcagaaaatcctttcc	6	9	0	4			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40433722	C	C	40433722	1	2	92	0	1	0	0	0	0	0	0	0	5182	957	33	4		4	ENTPD3	3	40433722	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	1680145	40433722	157588708	52	93066											
ERC2	26059	broad.mit.edu	37	chr3	56114807	56114807	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaaaatgacaaaacatggAtgataccccacttgaaggtc	7	9	1	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56114807	G	G	56114807	1	3	92	0	1	0	0	0	0	0	0	0	5253	348	12	5		5	ERC2	3	56114807	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	15681085	56114807	141907623	53	93067											
FAM3D	131177	broad.mit.edu	37	chr3	58629326	58629326	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttggttgaatgaatatgCcgctaccccctaccctccct	7	14	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58629326	G	G	58629326	1	3	92	0	1	0	0	0	0	0	0	0	5610	754	26	4		4	FAM3D	3	58629326	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	2514519	58629326	139393104	54	93068											
TMF1	7110	broad.mit.edu	37	chr3	69101202	69101202	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggacagggcctgcttagcGaagctggagagctgggaggc	19	8	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69101202	A	A	69101202	2	1	92	1	0	0	0	0	0	0	0	1	16351	1049	37	4		4	TMF1	3	69101202	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	10471876	69101202	128921228	55	93069											
GSK3B	2932	broad.mit.edu	37	chr3	119748148	119748148	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatagagagtaccttctctgCagcggacaatgatcagatat	9	8	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119748148	T	T	119748148	1	4	92	0	1	0	0	0	0	0	0	0	6890	725	25	4		4	GSK3B	3	119748148	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	50646946	119748148	78274282	56	93070											
ACPP	55	broad.mit.edu	37	chr3	132075715	132075715	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggtactgaagacagtaCagattagtgtgcacagagat	11	6	1	4			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132075715	T	T	132075715	3	4	92	1	0	0	0	0	1	0	0	0	167	478	17	4	1192	4	ACPP	3	132075715	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	12327567	132075715	65946715	57	93071											
KY	339855	broad.mit.edu	37	chr3	134322838	134322838	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatggggcagctggactttCagctcggtctgcttctcccg	13	13	3	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134322838	T	T	134322838	2	4	92	1	0	0	0	0	0	0	0	1	8658	813	29	4		4	KY	3	134322838	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	2247123	134322838	63699592	58	93072											
PLOD2	5352	broad.mit.edu	37	chr3	145789249	145789249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acataataagctgtactccaCgtgcaattcccatttatatt	4	10	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145789249	A	A	145789249	1	1	92	0	1	0	0	0	0	0	0	0	12197	551	19	3		3	PLOD2	3	145789249	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	11466411	145789249	52233181	59	93073											
DCUN1D1	54165	broad.mit.edu	37	chr3	182674140	182674140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagcaggcaaaagccaCaatgtcttaatttacttaga	9	8	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182674140	A	A	182674140	1	1	92	0	1	0	0	0	0	0	0	0	4346	493	17	3		3	DCUN1D1	3	182674140	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	36884891	182674140	15348290	60	93074											
POLN	353497	broad.mit.edu	37	chr4	2129810	2129810	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttggccttcctgcagatCtgataatattgtgagttcat	9	7	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2129810	A	A	2129810	1	1	92	0	1	0	0	0	0	0	0	0	12302	928	32	3		3	POLN	4	2129810	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01		2129810	189024466	61	93075											
TBC1D1	23216	broad.mit.edu	37	chr4	38051323	38051323	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcggaggacctgtccagtGactcggagagtcatctccca	11	14	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38051323	A	A	38051323	3	1	92	1	0	0	0	0	1	0	0	0	15716	1290	45	4	1752	4	TBC1D1	4	38051323	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	35921513	38051323	153102953	62	93076											
GABRG1	2565	broad.mit.edu	37	chr4	46060407	46060407	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaagaaaaaaaagttttAttttggctatataatataaa	5	2	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46060407	G	G	46060407	1	3	92	0	1	0	0	0	0	0	0	0	6231	464	16	5		5	GABRG1	4	46060407	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	8009084	46060407	145093869	63	93077											
SRD5A3	79644	broad.mit.edu	37	chr4	56236046	56236046	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccatttggagactggtttGaatatgtttcttcccctaac	7	10	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56236046	A	A	56236046	3	1	92	1	0	0	0	0	1	0	0	0	15258	1291	45	4	763	4	SRD5A3	4	56236046	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	10175639	56236046	134918230	64	93078											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68688033	68688033	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacctgcatacagactttgCaacagggatgcacttgttgc	9	11	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68688033	T	T	68688033	1	4	92	0	1	0	0	0	0	0	0	0	16364	725	25	4		4	TMPRSS11D	4	68688033	3'UTR	SNP	C	TCGA-35-3615-01A-01D-1040-01	12451987	68688033	122466243	65	93079											
NPFFR2	10886	broad.mit.edu	37	chr4	73013156	73013156	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggactctaatgatgctctCagactacgctgacctttctc	8	12	3	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73013156	T	T	73013156	3	4	92	1	0	0	0	0	1	0	0	0	10673	838	29	4	1216	4	NPFFR2	4	73013156	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	4325123	73013156	118141120	66	93080											
SDAD1	55153	broad.mit.edu	37	chr4	76898821	76898821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcagaagtttatcatggCaacgaaaaagttcaaagaag	9	6	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76898821	A	A	76898821	3	1	92	1	0	0	0	0	1	0	0	0	14063	710	25	3	1756	3	SDAD1	4	76898821	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	3885665	76898821	114255455	67	93081											
CTSO	1519	broad.mit.edu	37	chr4	156850896	156850896	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggttagaaaatttagttTttaaggtaaaaataacaatg	7	1	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156850896	C	C	156850896	1	2	92	0	1	0	0	0	0	0	0	0	4074	1856	64	5		5	CTSO	4	156850896	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	79952075	156850896	34303380	68	93082											
C4orf45	152940	broad.mit.edu	37	chr4	159894386	159894386	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgagatctccagttttttCtaacgccagatgctgttctc	7	11	4	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159894386	G	G	159894386	3	3	92	1	0	0	0	0	1	0	0	0	2296	922	32	4	434	4	C4orf45	4	159894386	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	3043490	159894386	31259890	69	93083											
ISL1	3670	broad.mit.edu	37	chr5	50683505	50683505	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttctgccgagcagaccacGatgtggtggagagggccagt	15	10	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683505	A	A	50683505	3	1	92	1	0	0	0	0	1	0	0	0	7926	1058	37	4	410	4	ISL1	5	50683505	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01		50683505	130231755	70	93084											
TRIM36	55521	broad.mit.edu	37	chr5	114466398	114466398	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacacggaaggcccagaAgtgttttccttttgtaatgc	9	10	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114466398	C	C	114466398	3	2	92	1	0	0	0	0	1	0	0	0	16634	72	3	5	471	5	TRIM36	5	114466398	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	63782893	114466398	66448862	71	93085											
TXNDC15	79770	broad.mit.edu	37	chr5	134235280	134235280	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggttgcttgtattttccTtattctttttaattagtttt	5	5	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134235280	G	G	134235280	3	3	92	1	0	0	0	0	1	0	0	0	16920	1606	56	5	1006	5	TXNDC15	5	134235280	Missense_Mutation	SNP	T	TCGA-35-3615-01A-01D-1040-01	19768882	134235280	46679980	72	93086											
BRD8	10902	broad.mit.edu	37	chr5	137505061	137505061	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacgagctagaacataaaaGagaacaatgtccaaatcttc	7	8	1	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137505061	A	A	137505061	1	1	92	0	1	0	0	0	0	0	0	0	1515	957	33	4		4	BRD8	5	137505061	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	3269781	137505061	43410199	73	93087											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139914884	139914884	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatctcactttggtggaagtCttcttgggctttcaatttta	8	7	4	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139914884	G	G	139914884	1	3	92	0	1	0	0	0	0	0	0	0	629	928	32	4		4	ANKHD1-EIF4EBP3	5	139914884	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	2409823	139914884	41000376	74	93088											
PCDHGB2	56103	broad.mit.edu	37	chr5	140741992	140741992	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcacaatcagccaagacaGagttcaattttctgaacata	5	11	4	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140741992	T	T	140741992	4	4	92	1	0	0	0	0	0	1	0	0	11657	943	33	3	2292	3	PCDHGB2	5	140741992	Nonsense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	827108	140741992	40173268	75	93089											
AFAP1L1	134265	broad.mit.edu	37	chr5	148695881	148695881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtggtgggtccagggcaCggggaggaagggtgctcagg	22	7	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148695881	A	A	148695881	1	1	92	0	1	0	0	0	0	0	0	0	354	551	19	3		3	AFAP1L1	5	148695881	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	7953889	148695881	32219379	76	93090											
MRPL22	29093	broad.mit.edu	37	chr5	154320812	154320812	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataacctgaggagccgggggAagctggccttggggtgagtc	18	8	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154320812	G	G	154320812	3	3	92	1	0	0	0	0	1	0	0	0	9882	247	9	5	70	5	MRPL22	5	154320812	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	5624931	154320812	26594448	77	93091											
FAM71B	153745	broad.mit.edu	37	chr5	156589711	156589711	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgtaaagctcctgtgctaGatgcagattggttcttcccc	9	10	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156589711	T	T	156589711	3	4	92	1	0	0	0	0	1	0	0	0	5659	942	33	3	256	3	FAM71B	5	156589711	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	2268899	156589711	24325549	78	93092											
RASGEF1C	255426	broad.mit.edu	37	chr5	179538348	179538348	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccggagccagcccaggtgGgcagggtgcatccctaacct	13	15	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179538348	A	A	179538348	1	1	92	0	1	0	0	0	0	0	0	0	13179	1247	43	4		4	RASGEF1C	5	179538348	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	22948637	179538348	1376912	79	93093											
FLT4	2324	broad.mit.edu	37	chr5	180053098	180053098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacccgtgcgctctcccGtccctgacctaccattcacc	6	22	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180053098	T	T	180053098	1	4	92	0	1	0	0	0	0	0	0	0	6002	1160	40	3		3	FLT4	5	180053098	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	514750	180053098	862162	80	93094											
IRF4	3662	broad.mit.edu	37	chr6	396779	396795	+	Intron	DEL	CTCCTGCACTCCTTTAA	-	-													agtgcttcctatctcagcctCtcctgcactcctttaacccc					rs113172745		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	396795	-	-	396779	6	5	92	0	1	1	0	1	0	0	0	0	7902	928	32	0		0	IRF4	6	396779	Intron	DEL	CTCCTGCACTCCTTTAA	TCGA-35-3615-01A-01D-1040-01		396779	170718288	81	93095											
FKBPL	63943	broad.mit.edu	37	chr6	32097522	32097522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcggctgagaggtgtcCttttctccaattgtattgac	11	8	1	2	rs143627051		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32097522	A	A	32097522	3	1	92	1	0	0	0	0	1	0	0	0	5973	680	24	2	1017	2	FKBPL	6	32097522	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	31700743	32097522	139017545	82	93096											
FOXP4	116113	broad.mit.edu	37	chr6	41564990	41564990	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctaccaggtgacctgcCcagagcccacccactcacct	7	20	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41564990	T	T	41564990	1	4	92	0	1	0	0	0	0	0	0	0	6089	638	22	4		4	FOXP4	6	41564990	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	9467468	41564990	129550077	83	93097											
DYNLT1	6993	broad.mit.edu	37	chr6	159065728	159065728	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttacctcctccgcagcctGgtagtcttccatctttcctc	7	16	2	0	rs151068285		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159065728	C	C	159065728	3	2	92	1	0	0	0	0	1	0	0	0	4892	1357	47	4	348	4	DYNLT1	6	159065728	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	117500738	159065728	12049339	84	93098											
INTS1	26173	broad.mit.edu	37	chr7	1516581	1516581	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaggaagaagcccggatGgcctcacctgggccaatggc	16	11	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1516581	A	A	1516581	1	1	92	0	1	0	0	0	0	0	0	0	7845	1363	47	4		4	INTS1	7	1516581	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01		1516581	157622082	85	93099											
RBAK	57786	broad.mit.edu	37	chr7	5105125	5105125	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcaggagagaaaccctatGaatgtaacgagtgtgggaaa	12	5	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5105125	T	T	5105125	4	4	92	1	0	0	0	0	0	1	0	0	13208	1291	45	3	2052	3	RBAK	7	5105125	Nonsense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	3588544	5105125	154033538	86	93100											
EIF2AK1	27102	broad.mit.edu	37	chr7	6088509	6088509	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtttttaaaaagcatttTgaaaacttgcatggaataaa	6	3	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6088509	C	C	6088509	1	2	92	0	1	0	0	0	0	0	0	0	5036	1827	63	5		5	EIF2AK1	7	6088509	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	983384	6088509	153050154	87	93101											
ZNF12	7559	broad.mit.edu	37	chr7	6732203	6732203	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaggaacagggttcgtttCtacatcaaaagttttaccag	9	7	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6732203	G	G	6732203	3	3	92	1	0	0	0	0	1	0	0	0	17844	922	32	4	1727	4	ZNF12	7	6732203	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	643694	6732203	152406460	88	93102											
SCIN	85477	broad.mit.edu	37	chr7	12668762	12668762	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaatggtaggatccaagttGaccaaaactcatatggtgaa	9	7	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12668762	A	A	12668762	3	1	92	1	0	0	0	0	1	0	0	0	14018	1290	45	4	1268	4	SCIN	7	12668762	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	5936559	12668762	146469901	89	93103											
OSBPL3	26031	broad.mit.edu	37	chr7	24910473	24910473	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctctatctgcagagGcaccaagagggtcacttggg	11	12	4	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24910473	A	A	24910473	1	1	92	0	1	0	0	0	0	0	0	0	11373	1218	42	4		4	OSBPL3	7	24910473	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	12241711	24910473	134228190	90	93104											
GLI3	2737	broad.mit.edu	37	chr7	42012056	42012056	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcggccaggcgacctggaCtgtgaatggctgccggaatc	16	11	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42012056	G	G	42012056	3	3	92	1	0	0	0	0	1	0	0	0	6503	564	20	4	2771	4	GLI3	7	42012056	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	17101583	42012056	117126607	91	93105											
IGFBP1	3484	broad.mit.edu	37	chr7	45931489	45931489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctaggctgataattcaCtgtgtcttgttagatatgct	9	6	3	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45931489	A	A	45931489	1	1	92	0	1	0	0	0	0	0	0	0	7648	580	20	3		3	IGFBP1	7	45931489	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	3919433	45931489	113207174	92	93106											
COPS6	10980	broad.mit.edu	37	chr7	99687973	99687973	+	Intron	DEL	A	-	-													agagcgagattccgtctcagAaaaaaaaaaaaaaagaatta					rs75914464		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99687973	-	-	99687973	6	5	92	0	1	1	0	1	0	0	0	0	3769	261	9	0		0	COPS6	7	99687973	Intron	DEL	A	TCGA-35-3615-01A-01D-1040-01	53756484	99687973	59450690	93	93107											
LRCH4	4034	broad.mit.edu	37	chr7	100172651	100172651	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggttggggctgaaggcacCgcaggtggggtcgggtggag	22	6	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100172651	T	T	100172651	1	4	92	0	1	0	0	0	0	0	0	0	9022	667	23	4		4	LRCH4	7	100172651	3'UTR	SNP	C	TCGA-35-3615-01A-01D-1040-01	484678	100172651	58966012	94	93108											
DLD	1738	broad.mit.edu	37	chr7	107558381	107558381	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacagggtattgagtacAaagttgggaaattcccattt	10	6	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107558381	G	G	107558381	3	3	92	1	0	0	0	0	1	0	0	0	4591	131	5	5	1295	5	DLD	7	107558381	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	7385730	107558381	51580282	95	93109											
SLC4A2	6522	broad.mit.edu	37	chr7	150770998	150770998	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggtcattgtcttaattcaAcaagacaagctccttgaaag	8	8	3	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150770998	T	T	150770998	1	4	92	0	1	0	0	0	0	0	0	0	14768	58	2	5		5	SLC4A2	7	150770998	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	43212617	150770998	8367665	96	93110											
LZTS1	11178	broad.mit.edu	37	chr8	20110503	20110503	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcttgagcttgttgccGcctttgggctccgggccctc	13	15	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20110503	A	A	20110503	2	1	92	1	0	0	0	0	0	0	0	1	9226	1074	38	4		4	LZTS1	8	20110503	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01		20110503	126253519	97	93111											
LRP12	29967	broad.mit.edu	37	chr8	105509951	105509951	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttccaggaggataaaagtCtggataattgggagaattaa	12	4	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105509951	G	G	105509951	3	3	92	1	0	0	0	0	1	0	0	0	9041	913	32	4	1762	4	LRP12	8	105509951	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	85399448	105509951	40854071	98	93112											
CNTLN	54875	broad.mit.edu	37	chr9	17466001	17466001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacattaactgaagaatGttccaacaagaaggtatcaa	7	6	1	4			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17466001	T	T	17466001	3	4	92	1	0	0	0	0	1	0	0	0	3671	1377	48	3	3670	3	CNTLN	9	17466001	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01		17466001	123747430	99	93113											
NFX1	4799	broad.mit.edu	37	chr9	33364822	33364822	+	Intron	DEL	A	-	-													tctctaaggccagcttgatgAaaaaaaaaaagcaatcaagt							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33364822	-	-	33364822	6	5	92	0	1	1	0	1	0	0	0	0	10482	261	9	0		0	NFX1	9	33364822	Intron	DEL	A	TCGA-35-3615-01A-01D-1040-01	15898821	33364822	107848609	100	93114											
CNTNAP3	79937	broad.mit.edu	37	chr9	39085591	39085591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattatatgtacactcaggCaagagtacagtttgcacctt	8	8	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39085591	A	A	39085591	1	1	92	0	1	0	0	0	0	0	0	0	3680	725	25	3		3	CNTNAP3	9	39085591	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	5720769	39085591	102127840	101	93115											
C9orf41	138199	broad.mit.edu	37	chr9	77598666	77598666	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactaaacttttttccaggtGgtatcacttgagaccattat	6	8	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77598666	A	A	77598666	1	1	92	0	1	0	0	0	0	0	0	0	2508	1363	47	4		4	C9orf41	9	77598666	3'UTR	SNP	G	TCGA-35-3615-01A-01D-1040-01	38513075	77598666	63614765	102	93116											
PTCH1	5727	broad.mit.edu	37	chr9	98218671	98218671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatgccgaacagctcgaCcgtcatcagcgccaggacca	9	16	3	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98218671	A	A	98218671	3	1	92	1	0	0	0	0	1	0	0	0	12836	507	18	3	1170	3	PTCH1	9	98218671	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	20620005	98218671	42994760	103	93117											
PSMB7	5695	broad.mit.edu	37	chr9	127167774	127167774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcatcactgtaacttagCcaaaagttgcatgagaagtc	8	8	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127167774	A	A	127167774	1	1	92	0	1	0	0	0	0	0	0	0	12788	754	26	3		3	PSMB7	9	127167774	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	28949103	127167774	14045657	104	93118											
ADAMTS13	11093	broad.mit.edu	37	chr9	136290667	136290667	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggggcagaactgcttcggGacccgtccctgggggctcag	17	12	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136290667	A	A	136290667	3	1	92	1	0	0	0	0	1	0	0	0	258	1174	41	4	363	4	ADAMTS13	9	136290667	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	9122893	136290667	4922764	105	93119											
ADAMTS13	11093	broad.mit.edu	37	chr9	136291428	136291428	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttaccgaggacactggcttcGacctgggagtcaccattgcc	11	13	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136291428	C	C	136291428	3	2	92	1	0	0	0	0	1	0	0	0	258	1058	37	4	671	4	ADAMTS13	9	136291428	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	761	136291428	4922003	106	93120											
TMEM72	643236	broad.mit.edu	37	chr10	45429161	45429161	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttccagaagttcctggccTacctgctgctgtcggtggcc	12	14	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45429161	A	A	45429161	3	1	92	1	0	0	0	0	1	0	0	0	16324	1522	53	5	300	5	TMEM72	10	45429161	Missense_Mutation	SNP	T	TCGA-35-3615-01A-01D-1040-01		45429161	90105586	107	93121											
C10orf72	196740	broad.mit.edu	37	chr10	50315576	50315576	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccctgggtggtggctGcaaaggggggcctactggcc	19	11	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50315576	A	A	50315576	1	1	92	0	1	0	0	0	0	0	0	0	1626	1334	46	4		4	C10orf72	10	50315576	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	4886415	50315576	85219171	108	93122											
PCDH15	65217	broad.mit.edu	37	chr10	55662997	55662997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatattaacataattccGcataccttcactctgagtac	4	11	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55662997	T	T	55662997	1	4	92	0	1	0	0	0	0	0	0	0	11605	1102	38	3		3	PCDH15	10	55662997	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	5347421	55662997	79871750	109	93123											
PCDH15	65217	broad.mit.edu	37	chr10	55996691	55996691	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aataatggggttcagttcttCctgaaaaaaaaattaagaga	8	4	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55996691	A	A	55996691	4	1	92	1	0	0	0	0	0	1	0	0	11605	869	30	3	6734	3	PCDH15	10	55996691	Nonsense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	333694	55996691	79538056	110	93124											
ARID5B	84159	broad.mit.edu	37	chr10	63845255	63845255	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaccaaaaagaggtcttgctGagaagtattaagttaccagg	10	6	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63845255	C	C	63845255	1	2	92	0	1	0	0	0	0	0	0	0	924	1305	45	4		4	ARID5B	10	63845255	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	7848564	63845255	71689492	111	93125											
ZCCHC24	219654	broad.mit.edu	37	chr10	81153970	81153970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggagtaaactgaggtcCggtaagggaaaagttgccct	16	6	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81153970	A	A	81153970	1	1	92	0	1	0	0	0	0	0	0	0	17714	667	23	1		1	ZCCHC24	10	81153970	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	17308715	81153970	54380777	112	93126											
DYDC2	84332	broad.mit.edu	37	chr10	82126540	82126540	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaagcaggaattcctgCcaggtacttccagtctgatt	9	11	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82126540	G	G	82126540	3	3	92	1	0	0	0	0	1	0	0	0	4879	739	26	4	377	4	DYDC2	10	82126540	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	972570	82126540	53408207	113	93127											
ABCC2	1244	broad.mit.edu	37	chr10	101571362	101571362	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagccacagtccgagagtGagttgccttctttccatcct	10	12	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101571362	C	C	101571362	1	2	92	0	1	0	0	0	0	0	0	0	53	1305	45	4		4	ABCC2	10	101571362	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	19444822	101571362	33963385	114	93128											
C10orf76	79591	broad.mit.edu	37	chr10	103783195	103783195	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccgcatttaagaagattAtaggcagataacaactgtcc	10	8	0	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103783195	T	T	103783195	1	4	92	0	1	0	0	0	0	0	0	0	1627	464	16	5		5	C10orf76	10	103783195	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	2211833	103783195	31751552	115	93129											
CYP17A1	1586	broad.mit.edu	37	chr10	104594740	104594740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccgttgtgggtggccagCatatcacacaatgtactgat	11	9	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104594740	A	A	104594740	3	1	92	1	0	0	0	0	1	0	0	0	4180	710	25	3	1082	3	CYP17A1	10	104594740	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	811545	104594740	30940007	116	93130											
MUC6	4588	broad.mit.edu	37	chr11	1018143	1018143	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccacaggggttctggtgCgtgtactagtggggttggga	20	6	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1018143	T	T	1018143	3	4	92	1	0	0	0	0	1	0	0	0	10074	768	27	4	2673	4	MUC6	11	1018143	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01		1018143	133988373	117	93131											
CARS	833	broad.mit.edu	37	chr11	3041474	3041474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagggcacggccaggaCggttctccgggcttagaggc	15	14	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3041474	A	A	3041474	2	1	92	1	0	0	0	0	0	0	0	1	2683	523	19	3		3	CARS	11	3041474	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	2023331	3041474	131965042	118	93132											
OR52I1	390037	broad.mit.edu	37	chr11	4615507	4615507	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacattgttatggcctcctCcgtggtacccaagatggtga	12	10	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4615507	T	T	4615507	3	4	92	1	0	0	0	0	1	0	0	0	11214	855	30	4	241	4	OR52I1	11	4615507	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	1574033	4615507	130391009	119	93133											
HBG2	3048	broad.mit.edu	37	chr11	5593057	5593057	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttccatactggtcaaaatAatctcttaggtgatgttctt	6	7	3	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5593057	T	T	5593057	1	4	92	0	1	0	0	0	0	0	0	0	7049	377	13	5		5	HBG2	11	5593057	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	977550	5593057	129413459	120	93134											
OR52N4	390072	broad.mit.edu	37	chr11	5776193	5776193	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctttactgaccttgttAtgtgctctagtacaatccct	5	11	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5776193	T	T	5776193	3	4	92	1	0	0	0	0	1	0	0	0	11223	449	16	5	225	5	OR52N4	11	5776193	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	183136	5776193	129230323	121	93135											
NLRP14	338323	broad.mit.edu	37	chr11	7060186	7060186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggaatgtttctgtaagaGggatttagggattaaaccat	12	3	1	1	rs114260711	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7060186	T	T	7060186	1	4	92	0	1	0	0	0	0	0	0	0	10571	1015	35	2		2	NLRP14	11	7060186	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	1283993	7060186	127946330	122	93136											
NLRP14	338323	broad.mit.edu	37	chr11	7064233	7064233	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaagaatcaccattatgtaGagctactaggaatgtctgag	10	6	2	4			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7064233	C	C	7064233	3	2	92	1	0	0	0	0	1	0	0	0	10571	943	33	4	986	4	NLRP14	11	7064233	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	4047	7064233	127942283	123	93137											
NELL1	4745	broad.mit.edu	37	chr11	20949890	20949890	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagctatcaaaggatacttCtgagattatgttccatgtcc	9	8	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20949890	A	A	20949890	1	1	92	0	1	0	0	0	0	0	0	0	10428	928	32	3		3	NELL1	11	20949890	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	13885657	20949890	114056626	124	93138											
OR5B3	441608	broad.mit.edu	37	chr11	58170746	58170746	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaggaatcccagaatatcAatacaataattcccaggttt	6	9	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58170746	T	T	58170746	4	4	92	1	0	0	0	0	0	1	0	0	11246	131	5	5	809	5	OR5B3	11	58170746	Nonsense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	37220856	58170746	76835770	125	93139											
RHOD	29984	broad.mit.edu	37	chr11	66833522	66833522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgcctgggacagattcCgctctgcttccttctgaacc	9	14	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66833522	A	A	66833522	1	1	92	0	1	0	0	0	0	0	0	0	13446	667	23	1		1	RHOD	11	66833522	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	8662776	66833522	68172994	126	93140											
GSTP1	2950	broad.mit.edu	37	chr11	67353976	67353977	+	Frame_Shift_Ins	INS	-	CC	CC													tggggcgcctcagtgcccggINScccaagctcaaggccttcct							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	67353977	CC	CC	67353976	7	5	92	1	0	1	1	0	0	0	0	0	6910	1190	42	0	587	0	GSTP1	11	67353976	Frame_Shift_Ins	INS	-	TCGA-35-3615-01A-01D-1040-01	520454	67353976	67652540	127	93141											
TBX10	347853	broad.mit.edu	37	chr11	67406885	67406885	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaccctgcccacccacccTggaacctgagcctgacccat	6	22	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67406885	A	A	67406885	1	1	92	0	1	0	0	0	0	0	0	0	15773	1595	55	5		5	TBX10	11	67406885	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	52909	67406885	67599631	128	93142											
FAT3	120114	broad.mit.edu	37	chr11	92088592	92088592	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagtgtaatattttgtgccAagagtgttgtttcacctctt	8	6	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92088592	T	T	92088592	1	4	92	0	1	0	0	0	0	0	0	0	5748	145	5	5		5	FAT3	11	92088592	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	24681707	92088592	42917924	129	93143											
ZC3H12C	85463	broad.mit.edu	37	chr11	110007729	110007729	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagactcacagacagctctgCaggtctccctgtttagagcc	9	13	3	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110007729	T	T	110007729	2	4	92	1	0	0	0	0	0	0	0	1	17689	718	25	4		4	ZC3H12C	11	110007729	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	17919137	110007729	24998787	130	93144											
ABCG4	64137	broad.mit.edu	37	chr11	119024780	119024780	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaggtaaattctgccgcCgggagctgattggcatcatg	12	10	3	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119024780	A	A	119024780	2	1	92	1	0	0	0	0	0	0	0	1	70	643	23	1		1	ABCG4	11	119024780	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	9017051	119024780	15981736	131	93145											
OR10G9	219870	broad.mit.edu	37	chr11	123894107	123894107	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccatcagttacccgctcAggtacaccagcatgatgagt	10	12	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123894107	T	T	123894107	3	4	92	1	0	0	0	0	1	0	0	0	10998	179	7	5	390	5	OR10G9	11	123894107	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	4869327	123894107	11112409	132	93146											
C11orf61	79684	broad.mit.edu	37	chr11	124661304	124661304	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatcaaaaccttagaactCagtgtacagggtgagtgaga	10	7	3	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124661304	T	T	124661304	1	4	92	0	1	0	0	0	0	0	0	0	1665	841	29	4		4	C11orf61	11	124661304	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	767197	124661304	10345212	133	93147											
FEZ1	9638	broad.mit.edu	37	chr11	125325678	125325678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttggtagggcactgaaacGggcagggttggaggttggag	21	4	0	1	rs144983982	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125325678	T	T	125325678	1	4	92	0	1	0	0	0	0	0	0	0	5880	1131	39	1		1	FEZ1	11	125325678	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	664374	125325678	9680838	134	93148											
FLI1	2313	broad.mit.edu	37	chr11	128679233	128679233	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttccttgaaatgttcaatGtctgtttctggagcatgtga	9	7	3	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128679233	A	A	128679233	1	1	92	0	1	0	0	0	0	0	0	0	5981	1392	48	4		4	FLI1	11	128679233	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	3353555	128679233	6327283	135	93149											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	92	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01		25398285	108453610	136	93150											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777759	43777759	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatccctctgctgaactcCagagccacaggtcacagagc	8	15	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43777759	T	T	43777759	3	4	92	1	0	0	0	0	1	0	0	0	266	603	21	4	1297	4	ADAMTS20	12	43777759	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	18379474	43777759	90074136	137	93151											
ARID2	196528	broad.mit.edu	37	chr12	46244361	46244361	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctacagtttcacagggtCaacagttaatcaccacatca	5	12	5	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46244361	T	T	46244361	4	4	92	1	0	0	0	0	0	1	0	0	917	827	29	4	2513	4	ARID2	12	46244361	Nonsense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	2466602	46244361	87607534	138	93152											
CALCOCO1	57658	broad.mit.edu	37	chr12	54109766	54109766	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccccaagaagggtggctttCtgctggcttgaggctgcaag	14	10	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54109766	T	T	54109766	2	4	92	1	0	0	0	0	0	0	0	1	2603	912	32	4		4	CALCOCO1	12	54109766	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	7865405	54109766	79742129	139	93153											
HSD17B6	8630	broad.mit.edu	37	chr12	57178691	57178691	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagttgaacctggctacttCagaacgggaatgacaaacat	9	8	1	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57178691	G	G	57178691	3	3	92	1	0	0	0	0	1	0	0	0	7454	825	29	4	637	4	HSD17B6	12	57178691	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	3068925	57178691	76673204	140	93154											
SLC6A15	55117	broad.mit.edu	37	chr12	85279637	85279637	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttaaatgttaattatAtaatttgaaaccctataaag	3	4	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85279637	G	G	85279637	1	3	92	0	1	0	0	0	0	0	0	0	14792	464	16	5		5	SLC6A15	12	85279637	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	28100946	85279637	48572258	141	93155											
NDUFA12	55967	broad.mit.edu	37	chr12	95387915	95387915	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtctcaaaaaagaaaaaaaaGaaagacaaataaaatgttgt	6	3	1	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95387915	C	C	95387915	1	2	92	0	1	0	0	0	0	0	0	0	10357	957	33	4		4	NDUFA12	12	95387915	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	10108278	95387915	38463980	142	93156											
CCDC60	160777	broad.mit.edu	37	chr12	119926463	119926463	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctggagcatggtgcctgctCcctcactgggagcaagtacc	12	14	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119926463	A	A	119926463	1	1	92	0	1	0	0	0	0	0	0	0	2859	870	30	3		3	CCDC60	12	119926463	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	24538548	119926463	13925432	143	93157											
IFT88	8100	broad.mit.edu	37	chr13	21219139	21219139	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtttagttaatgtcatgtCttgagtttttttaatcccta	6	5	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21219139	T	T	21219139	1	4	92	0	1	0	0	0	0	0	0	0	7636	928	32	4		4	IFT88	13	21219139	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01		21219139	93950739	144	93158											
MIPEP	4285	broad.mit.edu	37	chr13	24444289	24444289	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcccataagaaatgtacTactcaaatccaagattttaa	5	8	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24444289	C	C	24444289	3	2	92	1	0	0	0	0	1	0	0	0	9685	1522	53	5	1548	5	MIPEP	13	24444289	Missense_Mutation	SNP	T	TCGA-35-3615-01A-01D-1040-01	3225150	24444289	90725589	145	93159											
ATP8A2	51761	broad.mit.edu	37	chr13	26129181	26129181	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctgccatggccaggacatCaaaccttaatgaagagcttg	9	11	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26129181	A	A	26129181	4	1	92	1	0	0	0	0	0	1	0	0	1197	838	29	3	1288	3	ATP8A2	13	26129181	Nonsense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	1684892	26129181	89040697	146	93160											
AKAP11	11215	broad.mit.edu	37	chr13	42876365	42876365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactatagaaaaagaagaGttcatgttgaaactcatgcg	8	5	2	4			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42876365	T	T	42876365	3	4	92	1	0	0	0	0	1	0	0	0	447	1020	36	3	3505	3	AKAP11	13	42876365	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	16747184	42876365	72293513	147	93161											
PCDH9	5101	broad.mit.edu	37	chr13	67799512	67799512	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacttgtatgcagtacttaTagaccagtaaaagtgctcgt	9	8	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67799512	C	C	67799512	1	2	92	0	1	0	0	0	0	0	0	0	11612	1421	49	5		5	PCDH9	13	67799512	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	24923147	67799512	47370366	148	93162											
DCT	1638	broad.mit.edu	37	chr13	95114416	95114416	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataggttccattgcacaaGgtgaccaggtggttgtagtc	12	8	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95114416	T	T	95114416	2	4	92	1	0	0	0	0	0	0	0	1	4337	987	35	2		2	DCT	13	95114416	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	27314904	95114416	20055462	149	93163											
ADPRHL1	113622	broad.mit.edu	37	chr13	114107634	114107634	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgaggtggtccaggcccccgGaacgttgcagctcctcctgg	14	15	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114107634	A	A	114107634	3	1	92	1	0	0	0	0	1	0	0	0	332	1174	41	4	973	4	ADPRHL1	13	114107634	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	18993218	114107634	1062244	150	93164											
BAZ1A	11177	broad.mit.edu	37	chr14	35255506	35255506	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcccgttttaaatgatgaAagaaacagcaaacgccttaa	7	8	0	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35255506	T	T	35255506	1	4	92	0	1	0	0	0	0	0	0	0	1334	29	1	5		5	BAZ1A	14	35255506	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01		35255506	72094034	151	93165											
C14orf135	64430	broad.mit.edu	37	chr14	60575068	60575068	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacctaccaaatactttGtaactaactttgtttttaag	3	7	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60575068	C	C	60575068	1	2	92	0	1	0	0	0	0	0	0	0	1758	1392	48	4		4	C14orf135	14	60575068	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	25319562	60575068	46774472	152	93166											
CHGA	1113	broad.mit.edu	37	chr14	93398250	93398250	+	Intron	DEL	G	-	-													taatttgtagcaaaagctgaGgttctaccccagatttatct					rs62793360	by1000genomes	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93398250	-	-	93398250	6	5	92	0	1	1	0	1	0	0	0	0	3369	1015	35	0		0	CHGA	14	93398250	Intron	DEL	G	TCGA-35-3615-01A-01D-1040-01	32823182	93398250	13951290	153	93167											
KIF26A	26153	broad.mit.edu	37	chr14	104642378	104642378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaatgatgagtttgacGcctacacctctcaggcccct	8	14	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104642378	T	T	104642378	3	4	92	1	0	0	0	0	1	0	0	0	8364	1087	38	3	3299	3	KIF26A	14	104642378	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	11244128	104642378	2707162	154	93168											
UBE3A	7337	broad.mit.edu	37	chr15	25652310	25652310	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgatgataaccccatgtAccagctgactcatttttgaa	6	9	1	4			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25652310	G	G	25652310	1	3	92	0	1	0	0	0	0	0	0	0	17005	406	14	5		5	UBE3A	15	25652310	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01		25652310	76879082	155	93169											
ZNF770	54989	broad.mit.edu	37	chr15	35274098	35274098	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttaagtgagctgactgtCtaaaagatttcccacaaata	6	7	1	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35274098	T	T	35274098	3	4	92	1	0	0	0	0	1	0	0	0	18272	913	32	4	541	4	ZNF770	15	35274098	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	9621788	35274098	67257294	156	93170											
ZNF770	54989	broad.mit.edu	37	chr15	35274816	35274816	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctcagattcaccaatctCaccattttcaaaaccaccct	1	17	4	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35274816	T	T	35274816	3	4	92	1	0	0	0	0	1	0	0	0	18272	835	29	4	1259	4	ZNF770	15	35274816	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	718	35274816	67256576	157	93171											
CASC5	57082	broad.mit.edu	37	chr15	40917230	40917231	+	Missense_Mutation	DNP	GG	TT	TT													cagagcaattacttgaattaGgaaataaggcacacaatgat							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	40917231	TT	TT	40917230	3	4	92	1	0	0	0	0	1	0	0	0	2689	1001	35	2	4884	2	CASC5	15	40917230	Missense_Mutation	DNP	GG	TCGA-35-3615-01A-01D-1040-01	5642414	40917230	61614162	158	93172											
SPG11	80208	broad.mit.edu	37	chr15	44865727	44865727	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtcagagaggttgggaatCcccggggggtagggcacctg	18	9	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44865727	A	A	44865727	1	1	92	0	1	0	0	0	0	0	0	0	15159	870	30	3		3	SPG11	15	44865727	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	3948497	44865727	57665665	159	93173											
SPPL2A	84888	broad.mit.edu	37	chr15	51032016	51032016	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttcagttgtcactgctttCaagttttccctgtacaaaca	5	11	4	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51032016	T	T	51032016	2	4	92	1	0	0	0	0	0	0	0	1	15206	825	29	4		4	SPPL2A	15	51032016	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	6166289	51032016	51499376	160	93174											
LIPC	3990	broad.mit.edu	37	chr15	58860869	58860869	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgaaacacttcaataagcTccacctaaaacttaatgctg	4	10	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58860869	A	A	58860869	1	1	92	0	1	0	0	0	0	0	0	0	8893	1566	54	5		5	LIPC	15	58860869	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	7828853	58860869	43670523	161	93175											
TLN2	83660	broad.mit.edu	37	chr15	63044512	63044512	+	Frame_Shift_Del	DEL	T	-	-													tttgttttgcaggttctgggTgaatcgatggcagggatttc							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63044512	-	-	63044512	7	5	92	1	0	1	0	1	0	0	0	0	16071	1683	59	0	4344	0	TLN2	15	63044512	Frame_Shift_Del	DEL	T	TCGA-35-3615-01A-01D-1040-01	4183643	63044512	39486880	162	93176											
IGDCC4	57722	broad.mit.edu	37	chr15	65687617	65687617	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgacacgggggacaagGggactgtcatagtgccaccc	15	11	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65687617	A	A	65687617	1	1	92	0	1	0	0	0	0	0	0	0	7639	1247	43	4		4	IGDCC4	15	65687617	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	2643105	65687617	36843775	163	93177											
BNC1	646	broad.mit.edu	37	chr15	83932641	83932641	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgaaccagggtagctGggaggaggcctacagtctgg	15	10	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83932641	A	A	83932641	2	1	92	1	0	0	0	0	0	0	0	1	1480	1335	47	4		4	BNC1	15	83932641	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	18245024	83932641	18598751	164	93178											
DCI	1632	broad.mit.edu	37	chr16	2293439	2293439	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcctccagcggggcaggctCcctgcagggagaggccggac	17	14	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2293439	T	T	2293439	3	4	92	1	0	0	0	0	1	0	0	0	4322	869	30	4	477	4	DCI	16	2293439	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01		2293439	88061314	165	93179											
XYLT1	64131	broad.mit.edu	37	chr16	17202725	17202725	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caacgagtccagccatccctCcagcgctgtgcccgtggagg	12	16	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17202725	G	G	17202725	3	3	92	1	0	0	0	0	1	0	0	0	17590	864	30	4	176	4	XYLT1	16	17202725	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	14909286	17202725	73152028	166	93180											
ACSM2B	348158	broad.mit.edu	37	chr16	20548519	20548519	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatcatagtaaggccaagGgcccaaagggaaaagaaaga	11	7	2	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20548519	T	T	20548519	1	4	92	0	1	0	0	0	0	0	0	0	184	1247	43	2		2	ACSM2B	16	20548519	3'UTR	SNP	G	TCGA-35-3615-01A-01D-1040-01	3345794	20548519	69806234	167	93181											
TAOK2	9344	broad.mit.edu	37	chr16	29997963	29997963	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccaaagaatgcttggCgaggaggaggaagcagttgg	17	6	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29997963	T	T	29997963	2	4	92	1	0	0	0	0	0	0	0	1	15667	755	27	4		4	TAOK2	16	29997963	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	9449444	29997963	60356790	168	93182											
NETO2	81831	broad.mit.edu	37	chr16	47120100	47120100	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgaagggcaatagccactCttttctcaaaaatgttggcc	8	9	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47120100	G	G	47120100	1	3	92	0	1	0	0	0	0	0	0	0	10435	928	32	4		4	NETO2	16	47120100	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	17122137	47120100	43234653	169	93183											
SALL1	6299	broad.mit.edu	37	chr16	51173710	51173710	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcaaaggaacctgtgtcaGactccatggactcagagtag	10	10	3	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51173710	T	T	51173710	3	4	92	1	0	0	0	0	1	0	0	0	13921	942	33	3	1559	3	SALL1	16	51173710	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	4053610	51173710	39181043	170	93184											
NUDT21	11051	broad.mit.edu	37	chr16	56468371	56468371	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaaggctaaaataaaacaGaattcattattataagttat	4	4	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56468371	C	C	56468371	1	2	92	0	1	0	0	0	0	0	0	0	10833	957	33	4		4	NUDT21	16	56468371	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	5294661	56468371	33886382	171	93185											
NUP93	9688	broad.mit.edu	37	chr16	56875520	56875520	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaatggtgaggagtggtgCaaccaggcctgcctggagca	17	9	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56875520	T	T	56875520	1	4	92	0	1	0	0	0	0	0	0	0	10867	725	25	4		4	NUP93	16	56875520	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	407149	56875520	33479233	172	93186											
PLCG2	5336	broad.mit.edu	37	chr16	81970063	81970063	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgagtcaccttgggtcagcGataccatgtggtgtccaaga	12	11	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81970063	T	T	81970063	1	4	92	0	1	0	0	0	0	0	0	0	12131	1073	37	3		3	PLCG2	16	81970063	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	25094543	81970063	8384690	173	93187											
COX4I1	1327	broad.mit.edu	37	chr16	85838571	85838571	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagagcgaagacttttcGctcccagcttatatggatcg	11	9	0	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85838571	A	A	85838571	2	1	92	1	0	0	0	0	0	0	0	1	3801	1074	38	4		4	COX4I1	16	85838571	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	3868508	85838571	4516182	174	93188											
C17orf97	400566	broad.mit.edu	37	chr17	263636	263636	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccccaaggccctcaagggCttccaccccgaccccgaggc	10	20	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	263636	T	T	263636	2	4	92	1	0	0	0	0	0	0	0	1	1910	784	28	4		4	C17orf97	17	263636	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01		263636	80931574	175	93189											
VPS53	55275	broad.mit.edu	37	chr17	534814	534814	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgccctgggaaggaaacgcTtcttcaaaatctgccaggat	11	10	3	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	534814	A	A	534814	3	1	92	1	0	0	0	0	1	0	0	0	17342	1606	56	5	1910	5	VPS53	17	534814	Missense_Mutation	SNP	T	TCGA-35-3615-01A-01D-1040-01	271178	534814	80660396	176	93190											
ALDH3A1	218	broad.mit.edu	37	chr17	19642457	19642457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctgcccacaggatgcCccagcccccaacccgaccct	7	22	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19642457	A	A	19642457	1	1	92	0	1	0	0	0	0	0	0	0	497	638	22	2		2	ALDH3A1	17	19642457	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	19107643	19642457	61552753	177	93191											
SLFN12	55106	broad.mit.edu	37	chr17	33749265	33749265	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggacttttcgatttctctTtctaagtcatcgaggtcact	7	9	4	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33749265	A	A	33749265	3	1	92	1	0	0	0	0	1	0	0	0	14848	1838	64	5	965	5	SLFN12	17	33749265	Missense_Mutation	SNP	T	TCGA-35-3615-01A-01D-1040-01	14106808	33749265	47445945	178	93192											
MED1	5469	broad.mit.edu	37	chr17	37564758	37564758	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgacttcatgccagagcttGaactagttccagacatatga	8	9	1	5			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37564758	A	A	37564758	3	1	92	1	0	0	0	0	1	0	0	0	9518	1294	45	4	1033	4	MED1	17	37564758	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	3815493	37564758	43630452	179	93193											
TMEM99	147184	broad.mit.edu	37	chr17	38991095	38991095	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttggctcgtggttgctcttCaacaactggactggaggctc	13	10	2	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38991095	T	T	38991095	2	4	92	1	0	0	0	0	0	0	0	1	16349	825	29	4		4	TMEM99	17	38991095	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	1426337	38991095	42204115	180	93194											
ANKFN1	162282	broad.mit.edu	37	chr17	54230779	54230779	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggataaagccagggttccCttggcaacgggaccgtgtgg	15	10	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54230779	T	T	54230779	1	4	92	0	1	0	0	0	0	0	0	0	625	696	24	4		4	ANKFN1	17	54230779	5'Flank	SNP	C	TCGA-35-3615-01A-01D-1040-01	15239684	54230779	26964431	181	93195											
C17orf70	80233	broad.mit.edu	37	chr17	79517503	79517503	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgggaggcagtactcCcgcagctcgggcaccagctt	15	14	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79517503	T	T	79517503	2	4	92	1	0	0	0	0	0	0	0	1	1893	610	22	4		4	C17orf70	17	79517503	Silent	SNP	C	TCGA-35-3615-01A-01D-1040-01	25286724	79517503	1677707	182	93196											
RAB31	11031	broad.mit.edu	37	chr18	9814045	9814045	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attggctcccatgtactatcGaggctcagctgcagctgtta	10	11	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9814045	A	A	9814045	3	1	92	1	0	0	0	0	1	0	0	0	13028	1058	37	4	244	4	RAB31	18	9814045	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01		9814045	68263203	183	93197											
SLC14A2	8170	broad.mit.edu	37	chr18	43247996	43247996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcaggacaagtaagtccCagaggctcagggtccaaaca	12	10	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43247996	A	A	43247996	1	1	92	0	1	0	0	0	0	0	0	0	14510	609	21	2		2	SLC14A2	18	43247996	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	33433951	43247996	34829252	184	93198											
MBD1	4152	broad.mit.edu	37	chr18	47801967	47801967	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgctccctccagcccaactCacccgtaggcaacgtcgctg	8	19	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47801967	G	G	47801967	1	3	92	0	1	0	0	0	0	0	0	0	9434	841	29	4		4	MBD1	18	47801967	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	4553971	47801967	30275281	185	93199											
ELAC1	55520	broad.mit.edu	37	chr18	48513152	48513152	+	Frame_Shift_Del	DEL	A	-	-													gttgtgggtgatggaggagtAaaactgtgctttgaagcaga							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48513152	-	-	48513152	7	5	92	1	0	1	0	1	0	0	0	0	5088	349	13	0	799	0	ELAC1	18	48513152	Frame_Shift_Del	DEL	A	TCGA-35-3615-01A-01D-1040-01	711185	48513152	29564096	186	93200											
CNDP1	84735	broad.mit.edu	37	chr18	72234726	72234726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggttgtgaatgggagcacCaatccattctgggatcttgg	15	7	2	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72234726	A	A	72234726	1	1	92	0	1	0	0	0	0	0	0	0	3625	609	21	2		2	CNDP1	18	72234726	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	23721574	72234726	5842522	187	93201											
STK11	6794	broad.mit.edu	37	chr19	1220717	1220717	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcggctggggtcaccctGtaagtgccccgcccccccgg	14	17	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220717	T	T	1220717	5	4	92	1	0	0	0	0	0	0	1	0	15405	1391	48	3	753	3	STK11	19	1220717	Splice_Site	SNP	G	TCGA-35-3615-01A-01D-1040-01		1220717	57908266	188	93202											
PLIN4	729359	broad.mit.edu	37	chr19	4512261	4512261	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcgctgcccccgtgagccCagtggacatcgtgtcttttg	11	13	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4512261	G	G	4512261	3	3	92	1	0	0	0	0	1	0	0	0	12187	594	21	4	2420	4	PLIN4	19	4512261	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	3291544	4512261	54616722	189	93203											
ELAVL1	1994	broad.mit.edu	37	chr19	8045931	8045931	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacagacctgtgcccaggGcaggaatggatgcggtggtg	17	9	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8045931	A	A	8045931	1	1	92	0	1	0	0	0	0	0	0	0	5091	1218	42	4		4	ELAVL1	19	8045931	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	3533670	8045931	51083052	190	93204											
OR1M1	125963	broad.mit.edu	37	chr19	9203982	9203982	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggactctcagaaaagcCagagcaggagacgcttctct	11	12	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9203982	A	A	9203982	3	1	92	1	0	0	0	0	1	0	0	0	11062	594	21	2	64	2	OR1M1	19	9203982	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	1158051	9203982	49925001	191	93205											
KEAP1	9817	broad.mit.edu	37	chr19	10600510	10600510	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggggccaccaagtgccactCatcccgctctggctcatacc	9	17	3	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10600510	A	A	10600510	4	1	92	1	0	0	0	0	0	1	0	0	8211	835	29	3	541	3	KEAP1	19	10600510	Nonsense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	1396528	10600510	48528473	192	93206											
ZNF490	57474	broad.mit.edu	37	chr19	12693580	12693580	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacctgaaactctgcttaTtgttttgcttgcttggcttt	7	8	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12693580	C	C	12693580	1	2	92	0	1	0	0	0	0	0	0	0	18068	1508	52	5		5	ZNF490	19	12693580	Intron	SNP	T	TCGA-35-3615-01A-01D-1040-01	2093070	12693580	46435403	193	93207											
ZNF420	147923	broad.mit.edu	37	chr19	37582163	37582163	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgaaattactggaagtaGacatggtttctcagggcacc	11	7	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37582163	A	A	37582163	1	1	92	0	1	0	0	0	0	0	0	0	18024	957	33	4		4	ZNF420	19	37582163	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	24888583	37582163	21546820	194	93208											
MEGF8	1954	broad.mit.edu	37	chr19	42866807	42866807	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcctggactcctgggtctGagggaggaggggctgggggc	23	8	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42866807	A	A	42866807	1	1	92	0	1	0	0	0	0	0	0	0	9556	1305	45	4		4	MEGF8	19	42866807	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	5284644	42866807	16262176	195	93209											
PSG3	5671	broad.mit.edu	37	chr19	43236960	43236960	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagattcagggtgactgggtCactgcggctggcactcactg	15	10	3	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43236960	T	T	43236960	3	4	92	1	0	0	0	0	1	0	0	0	12762	826	29	4	617	4	PSG3	19	43236960	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	370153	43236960	15892023	196	93210											
NLRP5	126206	broad.mit.edu	37	chr19	56539676	56539676	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgccttccactgtcttttcGagactcaagacaaagagttt	7	11	2	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56539676	A	A	56539676	3	1	92	1	0	0	0	0	1	0	0	0	10575	1059	37	4	2103	4	NLRP5	19	56539676	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	13302716	56539676	2589307	197	93211											
ZNF304	57343	broad.mit.edu	37	chr19	57868090	57868090	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgtgtgtaaggagtgtGgaaaagccttcattcacttg	11	7	3	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57868090	T	T	57868090	4	4	92	1	0	0	0	0	0	1	0	0	17959	1349	47	2	863	2	ZNF304	19	57868090	Nonsense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	1328414	57868090	1260893	198	93212											
PROKR2	128674	broad.mit.edu	37	chr20	5283318	5283318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaccatccagaccaaggCgatcaggaaggaggccgttt	13	11	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5283318	A	A	5283318	3	1	92	1	0	0	0	0	1	0	0	0	12659	768	27	3	634	3	PROKR2	20	5283318	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01		5283318	57742202	199	93213											
CHGB	1114	broad.mit.edu	37	chr20	5902942	5902942	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcttgtggaaccacaagCaattctgaaattatacctac	8	9	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5902942	A	A	5902942	1	1	92	0	1	0	0	0	0	0	0	0	3370	725	25	3		3	CHGB	20	5902942	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	619624	5902942	57122578	200	93214											
TMEM90B	79953	broad.mit.edu	37	chr20	24524025	24524025	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctctattcagagggcGtgctgcgctcctggggggac	14	12	3	1	rs139628724	byFrequency	TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24524025	A	A	24524025	3	1	92	1	0	0	0	0	1	0	0	0	16342	1145	40	4	294	4	TMEM90B	20	24524025	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	18621083	24524025	38501495	201	93215											
DEFB116	245930	broad.mit.edu	37	chr20	29891023	29891023	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgttggtgatattcaaatgtGagagtagcttgaactgtttg	12	4	1	3			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29891023	T	T	29891023	3	4	92	1	0	0	0	0	1	0	0	0	4444	1290	45	3	10	3	DEFB116	20	29891023	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	5366998	29891023	33134497	202	93216											
TRPC4AP	26133	broad.mit.edu	37	chr20	33608968	33608968	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagcacctgctccccgtgtCctgagacgctggagaggggc	15	14	0	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33608968	T	T	33608968	1	4	92	0	1	0	0	0	0	0	0	0	16706	870	30	4		4	TRPC4AP	20	33608968	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	3717945	33608968	29416552	203	93217											
RBL1	5933	broad.mit.edu	37	chr20	35660953	35660953	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttaaaaatggttaaaatGgtaaattttgtgttatgtat	7	2	0	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35660953	A	A	35660953	1	1	92	0	1	0	0	0	0	0	0	0	13217	1363	47	4		4	RBL1	20	35660953	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	2051985	35660953	27364567	204	93218											
SLC32A1	140679	broad.mit.edu	37	chr20	37356981	37356981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgctacagcggcgacgGgcgcctgaagtcctgggggc	18	13	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37356981	T	T	37356981	3	4	92	1	0	0	0	0	1	0	0	0	14679	1232	43	2	1283	2	SLC32A1	20	37356981	Missense_Mutation	SNP	G	TCGA-35-3615-01A-01D-1040-01	1696028	37356981	25668539	205	93219											
COL9A3	1299	broad.mit.edu	37	chr20	61460132	61460132	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagggcatgccgggcaaggAcggccagaatggcgtgccag	17	12	0	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61460132	T	T	61460132	3	4	92	1	0	0	0	0	1	0	0	0	3741	275	10	5	987	5	COL9A3	20	61460132	Missense_Mutation	SNP	A	TCGA-35-3615-01A-01D-1040-01	24103151	61460132	1565388	206	93220											
EEF1A2	1917	broad.mit.edu	37	chr20	62121879	62121879	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggcgggtcagacttgctgtCcccacacacgttgccccgcc	11	18	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62121879	T	T	62121879	3	4	92	1	0	0	0	0	1	0	0	0	4964	855	30	4	421	4	EEF1A2	20	62121879	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01	661747	62121879	903641	207	93221											
COL6A2	1292	broad.mit.edu	37	chr21	47544689	47544689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccaacacacacccaagCctcgtggttctgcccacggt	9	17	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47544689	A	A	47544689	1	1	92	0	1	0	0	0	0	0	0	0	3732	754	26	3		3	COL6A2	21	47544689	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01		47544689	585206	208	93222											
CECR2	27443	broad.mit.edu	37	chr22	17983959	17983959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacaggtcaccgagagttttCgcgagaggacctcccttcga	12	12	1	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17983959	T	T	17983959	3	4	92	1	0	0	0	0	1	0	0	0	3236	884	31	4	679	4	CECR2	22	17983959	Missense_Mutation	SNP	C	TCGA-35-3615-01A-01D-1040-01		17983959	33320607	209	93223											
DEPDC5	9681	broad.mit.edu	37	chr22	32174217	32174217	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattatggctaagtcctaaaAtcaaaaataaaacaagggcg	7	6	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32174217	G	G	32174217	1	3	92	0	1	0	0	0	0	0	0	0	4482	116	4	5		5	DEPDC5	22	32174217	Intron	SNP	A	TCGA-35-3615-01A-01D-1040-01	14190258	32174217	19130349	210	93224											
APOL4	80832	broad.mit.edu	37	chr22	36598259	36598259	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgctgggctcaagtgatCttcctccttcaaccttctga	7	13	5	2			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36598259	G	G	36598259	1	3	92	0	1	0	0	0	0	0	0	0	810	928	32	4		4	APOL4	22	36598259	Intron	SNP	C	TCGA-35-3615-01A-01D-1040-01	4424042	36598259	14706307	211	93225											
SUN2	25777	broad.mit.edu	37	chr22	39145916	39145916	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatggtgtttgggggcaccGctcctttgtcccgtctgccg	13	12	1	0			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39145916	T	T	39145916	1	4	92	0	1	0	0	0	0	0	0	0	15510	1102	38	3		3	SUN2	22	39145916	Intron	SNP	G	TCGA-35-3615-01A-01D-1040-01	2547657	39145916	12158650	212	93226											
CHKB	1120	broad.mit.edu	37	chr22	51018161	51018161	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccctccttcctcaccgactGacttctaccagcaaatcttc	3	19	3	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51018161	A	A	51018161	2	1	92	1	0	0	0	0	0	0	0	1	3379	1277	45	4		4	CHKB	22	51018161	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	11872245	51018161	286405	213	93227											
RBM10	8241	broad.mit.edu	37	chrX	47034469	47034470	+	Frame_Shift_Ins	INS	-	A	A													agtcacttgcaggacgctacINSacgatggatggaagccaatc							TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47034470	A	A	47034469	7	5	92	1	0	1	1	0	0	0	0	0	13219	478	17	0	572	0	RBM10	23	47034469	Frame_Shift_Ins	INS	-	TCGA-35-3615-01A-01D-1040-01		47034469	108236091	214	93228											
NSDHL	50814	broad.mit.edu	37	chrX	152027454	152027454	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacttgcaaagaggctggGgttcaggtaaggggaaggct	17	5	1	1			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152027454	T	T	152027454	2	4	92	1	0	0	0	0	0	0	0	1	10765	1219	43	2		2	NSDHL	23	152027454	Silent	SNP	G	TCGA-35-3615-01A-01D-1040-01	104992985	152027454	3243106	215	93229											
AGRN	375790	broad.mit.edu	37	chr1	981920	981920	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacacagccagaccacccctCcgccctcatcacgacctcgg	6	22	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	981920	T	T	981920	3	4	93	1	0	0	0	0	1	0	0	0	397	855	30	4	3125	4	AGRN	1	981920	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08		981920	248268701	1	93230											
PRDM16	63976	broad.mit.edu	37	chr1	3328888	3328888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttggccccggcttcatGgggatgcaggagaagaagct	14	9	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3328888	T	T	3328888	3	4	93	1	0	0	0	0	1	0	0	0	12563	1348	47	2	2161	2	PRDM16	1	3328888	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2346968	3328888	245921733	2	93231											
AJAP1	55966	broad.mit.edu	37	chr1	4832529	4832529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctgtgcccgtgtacacCgatgagacgctgcactcgac	11	14	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4832529	A	A	4832529	2	1	93	1	0	0	0	0	0	0	0	1	438	639	23	1		1	AJAP1	1	4832529	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	1503641	4832529	244418092	3	93232											
KIF1B	23095	broad.mit.edu	37	chr1	10412785	10412785	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacctgaagtcttcccacaActctagcaggtgggacaccc	9	14	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10412785	G	G	10412785	3	3	93	1	0	0	0	0	1	0	0	0	8354	43	2	5	5535	5	KIF1B	1	10412785	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	5580256	10412785	238837836	4	93233											
SRM	6723	broad.mit.edu	37	chr1	11116146	11116146	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttgaagagactttcggCggggcctggggaagacagag	16	9	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11116146	T	T	11116146	3	4	93	1	0	0	0	0	1	0	0	0	15269	768	27	4	383	4	SRM	1	11116146	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	703361	11116146	238134475	5	93234											
VPS13D	55187	broad.mit.edu	37	chr1	12327926	12327926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagttggcagagtctcaCaatcttttggtctacaaact	8	8	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12327926	A	A	12327926	3	1	93	1	0	0	0	0	1	0	0	0	17319	479	17	3	1804	3	VPS13D	1	12327926	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1211780	12327926	236922695	6	93235											
PRAMEF11	440560	broad.mit.edu	37	chr1	12884889	12884889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaacaagatcctcttggGgtgccttaagtgcctcactt	9	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12884889	T	T	12884889	3	4	93	1	0	0	0	0	1	0	0	0	12528	1232	43	2	92	2	PRAMEF11	1	12884889	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	556963	12884889	236365732	7	93236											
PRAMEF5	343068	broad.mit.edu	37	chr1	13052875	13052875	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttgagcaaatctgctccAgcagagagtaccatcagcac	8	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13052875	G	G	13052875	1	3	93	0	1	0	0	0	0	0	0	0	12542	203	7	5		5	PRAMEF5	1	13052875	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	167986	13052875	236197746	8	93237											
LOC440563	440563	broad.mit.edu	37	chr1	13183458	13183458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttcgagggcactacagCcagagcaatgggaggaggag	17	7	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13183458	A	A	13183458	3	1	93	1	0	0	0	0	1	0	0	0	8962	739	26	3	470	3	LOC440563	1	13183458	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	130583	13183458	236067163	9	93238											
PRDM2	7799	broad.mit.edu	37	chr1	14108797	14108797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtggacactcatcacctGcaagtagtgacaaaaacagt	9	9	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14108797	T	T	14108797	3	4	93	1	0	0	0	0	1	0	0	0	12564	1319	46	3	4533	3	PRDM2	1	14108797	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	925339	14108797	235141824	10	93239											
CLCNKB	1188	broad.mit.edu	37	chr1	16375653	16375653	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcatgtcttcccacttcTctgtctgggattactggagg	11	10	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16375653	C	C	16375653	3	2	93	1	0	0	0	0	1	0	0	0	3501	1551	54	5	868	5	CLCNKB	1	16375653	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	2266856	16375653	232874968	11	93240											
PADI3	51702	broad.mit.edu	37	chr1	17599784	17599784	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagagccgagccagcagggGcagctgttgactgtcacagc	14	12	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17599784	A	A	17599784	1	1	93	0	1	0	0	0	0	0	0	0	11473	1218	42	4		4	PADI3	1	17599784	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1224131	17599784	231650837	12	93241											
MRTO4	51154	broad.mit.edu	37	chr1	19585128	19585128	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaatgcccccctgcactttGaataccttcattcctcctga	4	15	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19585128	C	C	19585128	1	2	93	0	1	0	0	0	0	0	0	0	9946	1305	45	4		4	MRTO4	1	19585128	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1985344	19585128	229665493	13	93242											
ECE1	1889	broad.mit.edu	37	chr1	21560098	21560098	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcggcagtgaccctccaTgagaagttgaaaaaccgcat	10	10	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21560098	C	C	21560098	2	2	93	1	0	0	0	0	0	0	0	1	4929	1451	51	5		5	ECE1	1	21560098	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	1974970	21560098	227690523	14	93243											
USP48	84196	broad.mit.edu	37	chr1	22021556	22021556	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttgaacaaatgtttccctCacctgaattttcaattcttt	3	10	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22021556	T	T	22021556	1	4	93	0	1	0	0	0	0	0	0	0	17206	841	29	4		4	USP48	1	22021556	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	461458	22021556	227229065	15	93244											
EPHA8	2046	broad.mit.edu	37	chr1	22902781	22902781	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtttgcaacgtcatgagCcccaaccagaacaactggct	9	13	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22902781	T	T	22902781	2	4	93	1	0	0	0	0	0	0	0	1	5215	738	26	4		4	EPHA8	1	22902781	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	881225	22902781	226347840	16	93245											
ZNF436	80818	broad.mit.edu	37	chr1	23688996	23688996	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggactcgatagtgtttgatGagatcagatctctcactgaa	10	7	3	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23688996	A	A	23688996	2	1	93	1	0	0	0	0	0	0	0	1	18036	1277	45	4		4	ZNF436	1	23688996	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	786215	23688996	225561625	17	93246											
SRRM1	10250	broad.mit.edu	37	chr1	24979550	24979550	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttaaatttggaagtgtCaagtgtttgacacttctgga	9	4	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24979550	G	G	24979550	1	3	93	0	1	0	0	0	0	0	0	0	15286	841	29	4		4	SRRM1	1	24979550	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1290554	24979550	224271071	18	93247											
SESN2	83667	broad.mit.edu	37	chr1	28598891	28598891	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggctgctgggcctccacCgggcccccgagaagctgcgc	15	16	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28598891	T	T	28598891	3	4	93	1	0	0	0	0	1	0	0	0	14238	643	23	4	465	4	SESN2	1	28598891	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3619341	28598891	220651730	19	93248											
TINAGL1	64129	broad.mit.edu	37	chr1	32044664	32044664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatttcagtgagagctggtAtgtgtgtgtgtgtgtgagac	15	3	1	2	rs139778483	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32044664	G	G	32044664	1	3	93	0	1	0	0	0	0	0	0	0	16045	464	16	5		5	TINAGL1	1	32044664	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3445773	32044664	217205957	20	93249											
CSMD2	114784	broad.mit.edu	37	chr1	34128333	34128333	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagagtgagctcagcacagAcatttgaacaggtgctaacc	10	11	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34128333	T	T	34128333	1	4	93	0	1	0	0	0	0	0	0	0	3979	290	10	5		5	CSMD2	1	34128333	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	2083669	34128333	215122288	21	93250											
ZMYM6	9204	broad.mit.edu	37	chr1	35496222	35496222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgctttgccacattcacCatccaaaggttctttcattc	4	14	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35496222	A	A	35496222	3	1	93	1	0	0	0	0	1	0	0	0	17830	594	21	2	4018	2	ZMYM6	1	35496222	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1367889	35496222	213754399	22	93251											
STK40	83931	broad.mit.edu	37	chr1	36824331	36824331	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaccctcacccccatgtctCacttaccttcagctgataga	5	17	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36824331	A	A	36824331	1	1	93	0	1	0	0	0	0	0	0	0	15425	841	29	3		3	STK40	1	36824331	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1328109	36824331	212426290	23	93252											
MACF1	23499	broad.mit.edu	37	chr1	39798844	39798844	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatctcacataaaaccccAaagcaaaaagttacaagttc	5	10	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39798844	T	T	39798844	3	4	93	1	0	0	0	0	1	0	0	0	9232	130	5	5	6675	5	MACF1	1	39798844	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	2974513	39798844	209451777	24	93253											
MACF1	23499	broad.mit.edu	37	chr1	39929350	39929350	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagcagatcggagagaatAaataccgggtaaggaagaga	15	4	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39929350	G	G	39929350	3	3	93	1	0	0	0	0	1	0	0	0	9232	363	13	5	22077	5	MACF1	1	39929350	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	130506	39929350	209321271	25	93254											
CYP4B1	1580	broad.mit.edu	37	chr1	47279668	47279668	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccagtaccataatgacttCatctactggctcaccccaca	4	15	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47279668	A	A	47279668	3	1	93	1	0	0	0	0	1	0	0	0	4218	825	29	3	730	3	CYP4B1	1	47279668	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	7350318	47279668	201970953	26	93255											
ZYG11B	79699	broad.mit.edu	37	chr1	53282163	53282163	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctttaggaaattacgctaaAtatgggatgtaactttgatt	9	4	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53282163	T	T	53282163	1	4	93	0	1	0	0	0	0	0	0	0	18382	116	4	5		5	ZYG11B	1	53282163	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	6002495	53282163	195968458	27	93256											
PCSK9	255738	broad.mit.edu	37	chr1	55521646	55521646	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtctccccaaggggtgacCttggctttgttcctcccagg	12	13	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55521646	G	G	55521646	1	3	93	0	1	0	0	0	0	0	0	0	11700	696	24	4		4	PCSK9	1	55521646	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2239483	55521646	193728975	28	93257											
USP24	23358	broad.mit.edu	37	chr1	55598123	55598123	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaccaatcatcacataacaGaaacctatttacttatttct	1	11	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55598123	A	A	55598123	1	1	93	0	1	0	0	0	0	0	0	0	17181	957	33	4		4	USP24	1	55598123	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	76477	55598123	193652498	29	93258											
PDE4B	5142	broad.mit.edu	37	chr1	66713197	66713197	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccactggatccccaggcCagctcttccgctgggctggt	12	15	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66713197	A	A	66713197	2	1	93	1	0	0	0	0	0	0	0	1	11734	581	21	2		2	PDE4B	1	66713197	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	11115074	66713197	182537424	30	93259											
SGIP1	84251	broad.mit.edu	37	chr1	67142838	67142838	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcattttagtgtctgtctgCatagtgaaattaggcaactc	8	8	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67142838	T	T	67142838	1	4	93	0	1	0	0	0	0	0	0	0	14319	725	25	4		4	SGIP1	1	67142838	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	429641	67142838	182107783	31	93260											
WLS	79971	broad.mit.edu	37	chr1	68611506	68611506	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttacacatcaagtggaaaGatcaagcaagcaccagttcc	8	10	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68611506	C	C	68611506	1	2	93	0	1	0	0	0	0	0	0	0	17503	957	33	4		4	WLS	1	68611506	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1468668	68611506	180639115	32	93261											
C1orf173	127254	broad.mit.edu	37	chr1	75139260	75139260	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggtgggtgcgtggggcCccgtgcgcgctggcgctgcg	23	11	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75139260	T	T	75139260	1	4	93	0	1	0	0	0	0	0	0	0	2034	638	22	4		4	C1orf173	1	75139260	5'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	6527754	75139260	174111361	33	93262											
MCOLN3	55283	broad.mit.edu	37	chr1	85498523	85498523	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcaatatatacgtgcaaAcgtaagttacactcctgtct	8	9	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85498523	C	C	85498523	1	2	93	0	1	0	0	0	0	0	0	0	9490	58	2	5		5	MCOLN3	1	85498523	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	10359263	85498523	163752098	34	93263											
MTF2	22823	broad.mit.edu	37	chr1	93580228	93580228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgactctcttttttaatgTgttttaaatattttaggagc	6	4	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93580228	C	C	93580228	1	2	93	0	1	0	0	0	0	0	0	0	10017	1711	59	5		5	MTF2	1	93580228	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	8081705	93580228	155670393	35	93264											
LPPR4	9890	broad.mit.edu	37	chr1	99762234	99762234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatatataattcctttataCctgttggcttaataggtatt	6	5	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99762234	A	A	99762234	1	1	93	0	1	0	0	0	0	0	0	0	9014	522	18	3		3	LPPR4	1	99762234	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	6182006	99762234	149488387	36	93265											
LPPR4	9890	broad.mit.edu	37	chr1	99771306	99771306	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcagcacagagacgccctCaggtctctgacagacctcaa	8	14	4	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771306	A	A	99771306	2	1	93	1	0	0	0	0	0	0	0	1	9014	813	29	3		3	LPPR4	1	99771306	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	9072	99771306	149479315	37	93266											
KCNA3	3738	broad.mit.edu	37	chr1	111216208	111216208	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctggagaaaaggatgacCccaataaagaggaagaagat	13	6	0	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111216208	T	T	111216208	2	4	93	1	0	0	0	0	0	0	0	1	8074	610	22	4		4	KCNA3	1	111216208	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	11444902	111216208	138034413	38	93267											
ADORA3	140	broad.mit.edu	37	chr1	112043035	112043035	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacggaaacaaattggcatGaaaggaaggtgacatttctg	12	5	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112043035	C	C	112043035	4	2	93	1	0	0	0	0	0	1	0	0	329	1294	45	4	1180	4	ADORA3	1	112043035	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	826827	112043035	137207586	39	93268											
SYCP1	6847	broad.mit.edu	37	chr1	115417054	115417054	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatattttaatgttttctgGaggcattttgagtattgtct	8	3	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115417054	T	T	115417054	1	4	93	0	1	0	0	0	0	0	0	0	15550	1189	41	3		3	SYCP1	1	115417054	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	3374019	115417054	133833567	40	93269											
TTF2	8458	broad.mit.edu	37	chr1	117634357	117634357	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatcaaacatggttaaagTagccccatgtagttcctggc	10	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117634357	C	C	117634357	1	2	93	0	1	0	0	0	0	0	0	0	16845	1653	57	5		5	TTF2	1	117634357	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2217303	117634357	131616264	41	93270											
PDE4DIP	9659	broad.mit.edu	37	chr1	144880587	144880587	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaactaattgtagaaattCaaacttatactcagcctcat	3	8	3	1	rs145545546	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144880587	G	G	144880587	1	3	93	0	1	0	0	0	0	0	0	0	11737	841	29	4		4	PDE4DIP	1	144880587	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	27246230	144880587	104370034	42	93271											
CHD1L	9557	broad.mit.edu	37	chr1	146747843	146747843	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaagcagcctccaaactGcagctcaccaacatgatcat	7	13	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146747843	A	A	146747843	2	1	93	1	0	0	0	0	0	0	0	1	3355	1306	46	4		4	CHD1L	1	146747843	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	1867256	146747843	102502778	43	93272											
SF3B4	10262	broad.mit.edu	37	chr1	149898396	149898396	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggttctgagctgccagaagtCgttcggctgctgagccatgg	15	10	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149898396	G	G	149898396	3	3	93	1	0	0	0	0	1	0	0	0	14266	884	31	4	712	4	SF3B4	1	149898396	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3150553	149898396	99352225	44	93273											
MTMR11	10903	broad.mit.edu	37	chr1	149905932	149905932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagagggaccattccaaGggatttcaggtttagggatc	12	8	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149905932	T	T	149905932	1	4	93	0	1	0	0	0	0	0	0	0	10034	1015	35	2		2	MTMR11	1	149905932	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	7536	149905932	99344689	45	93274											
CA14	23632	broad.mit.edu	37	chr1	150234455	150234455	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgggtgctactgggggagAaaactggaagagggccaagt	17	6	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150234455	C	C	150234455	1	2	93	0	1	0	0	0	0	0	0	0	2541	261	9	5		5	CA14	1	150234455	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	328523	150234455	99016166	46	93275											
ZNF687	57592	broad.mit.edu	37	chr1	151262666	151262666	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccccagcctgaggcgccaTgtcagagttaatcacgaggg	13	13	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151262666	C	C	151262666	2	2	93	1	0	0	0	0	0	0	0	1	18219	1461	51	5		5	ZNF687	1	151262666	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	1028211	151262666	97987955	47	93276											
HRNR	388697	broad.mit.edu	37	chr1	152188299	152188299	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagacccatgttggccgtGgcccaaagactgacgggagc	13	13	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152188299	A	A	152188299	3	1	93	1	0	0	0	0	1	0	0	0	7426	1348	47	4	2750	4	HRNR	1	152188299	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	925633	152188299	97062322	48	93277											
HRNR	388697	broad.mit.edu	37	chr1	152191001	152191001	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcatatgggccacggcttGaagaccaccctgagccagac	10	14	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152191001	T	T	152191001	4	4	93	1	0	0	0	0	0	1	0	0	7426	1294	45	3	5452	3	HRNR	1	152191001	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2702	152191001	97059620	49	93278											
HRNR	388697	broad.mit.edu	37	chr1	152191909	152191909	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctagatgactgtcctgaCctagagccgtgttttctgta	9	11	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152191909	T	T	152191909	2	4	93	1	0	0	0	0	0	0	0	1	7426	506	18	4		4	HRNR	1	152191909	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	908	152191909	97058712	50	93279											
SPRR2E	6704	broad.mit.edu	37	chr1	153066017	153066017	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctgaagctgttacttgcTcttgggtggacactttggct	11	8	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153066017	C	C	153066017	3	2	93	1	0	0	0	0	1	0	0	0	15218	1551	54	5	11	5	SPRR2E	1	153066017	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	874108	153066017	96184604	51	93280											
S100A16	140576	broad.mit.edu	37	chr1	153580197	153580197	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagcagggtcagcaatgctGatggtggaagccccagagag	16	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153580197	A	A	153580197	1	1	93	0	1	0	0	0	0	0	0	0	13888	1305	45	4		4	S100A16	1	153580197	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	514180	153580197	95670424	52	93281											
GON4L	54856	broad.mit.edu	37	chr1	155735336	155735336	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggttgtttagagactcctGgatgccctgagggagcggct	16	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155735336	A	A	155735336	4	1	93	1	0	0	0	0	0	1	0	0	6636	1357	47	4	2959	4	GON4L	1	155735336	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2155139	155735336	93515285	53	93282											
ISG20L2	81875	broad.mit.edu	37	chr1	156697502	156697502	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttatggatgaaaagaggAtgtgggactcattctctgct	13	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156697502	G	G	156697502	1	3	93	0	1	0	0	0	0	0	0	0	7925	348	12	5		5	ISG20L2	1	156697502	5'UTR	SNP	A	TCGA-35-4122-01A-01D-1105-08	962166	156697502	92553119	54	93283											
CD1E	913	broad.mit.edu	37	chr1	158326285	158326285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttattctatccccaacCaggtggatattccatctttc	4	12	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158326285	A	A	158326285	1	1	93	0	1	0	0	0	0	0	0	0	3008	609	21	2		2	CD1E	1	158326285	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1628783	158326285	90924336	55	93284											
PIGM	93183	broad.mit.edu	37	chr1	160001425	160001425	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccggtcctggaagacgccAtagaaaaccagggcgactct	12	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160001425	G	G	160001425	2	3	93	1	0	0	0	0	0	0	0	1	11987	224	8	5		5	PIGM	1	160001425	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	1675140	160001425	89249196	56	93285											
COPA	1314	broad.mit.edu	37	chr1	160268767	160268767	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaactagtttggcattcctCaccatgtgcagtacctagac	7	13	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160268767	T	T	160268767	2	4	93	1	0	0	0	0	0	0	0	1	3759	813	29	4		4	COPA	1	160268767	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	267342	160268767	88981854	57	93286											
COPA	1314	broad.mit.edu	37	chr1	160275308	160275308	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccccactcttgacacgaaTgttctcatgaatgttacata	7	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160275308	C	C	160275308	3	2	93	1	0	0	0	0	1	0	0	0	3759	1464	51	5	2160	5	COPA	1	160275308	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	6541	160275308	88975313	58	93287											
SLAMF1	6504	broad.mit.edu	37	chr1	160589496	160589496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgtgaatgtccaacagGcaaggtagactggccaggaa	12	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160589496	T	T	160589496	1	4	93	0	1	0	0	0	0	0	0	0	14480	1218	42	3		3	SLAMF1	1	160589496	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	314188	160589496	88661125	59	93288											
DDR2	4921	broad.mit.edu	37	chr1	162745571	162745571	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacatggagaatggagatctCaatcagtttctttcccgcca	8	10	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162745571	A	A	162745571	2	1	93	1	0	0	0	0	0	0	0	1	4370	813	29	3		3	DDR2	1	162745571	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	2156075	162745571	86505050	60	93289											
NUF2	83540	broad.mit.edu	37	chr1	163295923	163295923	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcttaacaggagctgatGgtaaaaacctcaccaagaat	8	8	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163295923	A	A	163295923	3	1	93	1	0	0	0	0	1	0	0	0	10842	1348	47	4	84	4	NUF2	1	163295923	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	550352	163295923	85954698	61	93290											
RXRG	6258	broad.mit.edu	37	chr1	165378824	165378824	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggagccgaccccagcactGtgggcactgctccggtggac	14	14	0	0	rs149401256		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165378824	A	A	165378824	2	1	93	1	0	0	0	0	0	0	0	1	13876	1368	48	4		4	RXRG	1	165378824	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	2082901	165378824	83871797	62	93291											
MAEL	84944	broad.mit.edu	37	chr1	166990843	166990843	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagtcagttaattgaggcAtctctttgtaataaaattat	7	4	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166990843	C	C	166990843	1	2	93	0	1	0	0	0	0	0	0	0	9242	232	8	5		5	MAEL	1	166990843	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	1612019	166990843	82259778	63	93292											
GORAB	92344	broad.mit.edu	37	chr1	170521505	170521505	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaagctgtttccccaaagGtagatgaccagtgtggaaat	10	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170521505	A	A	170521505	3	1	93	1	0	0	0	0	1	0	0	0	6638	1261	44	4	1109	4	GORAB	1	170521505	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	3530662	170521505	78729116	64	93293											
PAPPA2	60676	broad.mit.edu	37	chr1	176762792	176762792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggagcactggatggaacCtgtcaaagtccaggtgagga	14	8	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176762792	A	A	176762792	3	1	93	1	0	0	0	0	1	0	0	0	11527	681	24	2	5244	2	PAPPA2	1	176762792	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	6241287	176762792	72487829	65	93294											
ABL2	27	broad.mit.edu	37	chr1	179112279	179112279	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacatgcatgtgacatttaCtcatgtactcagtggccaga	8	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179112279	T	T	179112279	1	4	93	0	1	0	0	0	0	0	0	0	93	580	20	4		4	ABL2	1	179112279	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2349487	179112279	70138342	66	93295											
C1orf125	126859	broad.mit.edu	37	chr1	179425864	179425864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaccacctccatgaccaCcaccaaagtttccagaacta	4	15	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179425864	A	A	179425864	1	1	93	0	1	0	0	0	0	0	0	0	2013	522	18	3		3	C1orf125	1	179425864	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	313585	179425864	69824757	67	93296											
TDRD5	163589	broad.mit.edu	37	chr1	179659996	179659996	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgaagtacagccactgCtgccttaggtgctgccgcac	10	15	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179659996	T	T	179659996	3	4	93	1	0	0	0	0	1	0	0	0	15855	797	28	4	2926	4	TDRD5	1	179659996	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	234132	179659996	69590625	68	93297											
XPR1	9213	broad.mit.edu	37	chr1	180794176	180794176	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatccatcctctacttgaaGaggattattagcttaataac	5	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180794176	C	C	180794176	1	2	93	0	1	0	0	0	0	0	0	0	17578	957	33	4		4	XPR1	1	180794176	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1134180	180794176	68456445	69	93298											
ZNF648	127665	broad.mit.edu	37	chr1	182026889	182026889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccccatgcccccagcaCtggaggagtcagagaatttc	10	14	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182026889	A	A	182026889	3	1	93	1	0	0	0	0	1	0	0	0	18190	565	20	3	1453	3	ZNF648	1	182026889	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1232713	182026889	67223732	70	93299											
DHX9	1660	broad.mit.edu	37	chr1	182836207	182836207	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgagaggtacagtaaggtActtaattctgctatttctaa	8	6	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182836207	G	G	182836207	1	3	93	0	1	0	0	0	0	0	0	0	4556	406	14	5		5	DHX9	1	182836207	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	809318	182836207	66414414	71	93300											
HMCN1	83872	broad.mit.edu	37	chr1	185834871	185834871	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttttttttttttaatcatAggtcgtatttgttctgactg	6	5	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185834871	C	C	185834871	5	2	93	1	0	0	0	0	0	0	1	0	7287	434	15	5	511	5	HMCN1	1	185834871	Splice_Site	SNP	A	TCGA-35-4122-01A-01D-1105-08	2998664	185834871	63415750	72	93301											
HMCN1	83872	broad.mit.edu	37	chr1	185984418	185984418	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttggtataaggacgggcaGccaatcatgtccagctcaca	10	11	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185984418	C	C	185984418	3	2	93	1	0	0	0	0	1	0	0	0	7287	962	34	4	4880	4	HMCN1	1	185984418	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	149547	185984418	63266203	73	93302											
HMCN1	83872	broad.mit.edu	37	chr1	186064444	186064444	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtagttccacctctaTggcatgcattactgatggaa	9	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186064444	C	C	186064444	3	2	93	1	0	0	0	0	1	0	0	0	7287	1464	51	5	10634	5	HMCN1	1	186064444	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	80026	186064444	63186177	74	93303											
F13B	2165	broad.mit.edu	37	chr1	197030094	197030094	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctcctctgtcttctttcctCcagctgtgtagtagccagta	7	14	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197030094	G	G	197030094	3	3	93	1	0	0	0	0	1	0	0	0	5384	855	30	4	1458	4	F13B	1	197030094	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	10965650	197030094	52220527	75	93304											
CTSE	1510	broad.mit.edu	37	chr1	206327587	206327587	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcttactggcagattgCactggataagtgagtattcc	11	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206327587	T	T	206327587	3	4	93	1	0	0	0	0	1	0	0	0	4067	710	25	4	798	4	CTSE	1	206327587	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	9297493	206327587	42923034	76	93305											
C4BPB	725	broad.mit.edu	37	chr1	207271381	207271381	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcattgaggctcaagggcAgggaggtggattccatcaca	14	8	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207271381	T	T	207271381	1	4	93	0	1	0	0	0	0	0	0	0	2273	203	7	5		5	C4BPB	1	207271381	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	943794	207271381	41979240	77	93306											
USH2A	7399	broad.mit.edu	37	chr1	215953238	215953238	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtggatgagacctttcCcaacctgcctgatctggtac	10	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215953238	T	T	215953238	3	4	93	1	0	0	0	0	1	0	0	0	17162	623	22	4	4794	4	USH2A	1	215953238	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	8681857	215953238	33297383	78	93307											
USH2A	7399	broad.mit.edu	37	chr1	216052334	216052334	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagatgagtaactttttgaCttaacactgcggaagtcaca	8	8	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216052334	G	G	216052334	3	3	93	1	0	0	0	0	1	0	0	0	17162	565	20	4	7402	4	USH2A	1	216052334	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	99096	216052334	33198287	79	93308											
PCNXL2	80003	broad.mit.edu	37	chr1	233190059	233190059	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtgacaagaccatttcCaatttcaatcaggtgaacaa	7	8	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233190059	A	A	233190059	4	1	93	1	0	0	0	0	0	1	0	0	11686	603	21	2	2147	2	PCNXL2	1	233190059	Nonsense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	17137725	233190059	16060562	80	93309											
LYST	1130	broad.mit.edu	37	chr1	235968001	235968001	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagactaagaatattaataAccattttaaaaaactaaatg	4	4	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235968001	G	G	235968001	1	3	93	0	1	0	0	0	0	0	0	0	9216	58	2	5		5	LYST	1	235968001	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	2777942	235968001	13282620	81	93310											
MTR	4548	broad.mit.edu	37	chr1	236990115	236990115	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacttgctgaaactttgtctCttcctaaatgcaggattttg	7	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236990115	G	G	236990115	1	3	93	0	1	0	0	0	0	0	0	0	10052	928	32	4		4	MTR	1	236990115	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1022114	236990115	12260506	82	93311											
ZP4	57829	broad.mit.edu	37	chr1	238048467	238048467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagggaacatcctaccgGtcccctgagggcctgtttct	12	12	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048467	T	T	238048467	3	4	93	1	0	0	0	0	1	0	0	0	18347	1261	44	3	329	3	ZP4	1	238048467	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1058352	238048467	11202154	83	93312											
ZP4	57829	broad.mit.edu	37	chr1	238050184	238050184	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgatctacaggaatagatgGagaagtcttgatcatttctg	11	5	4	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050184	A	A	238050184	1	1	93	0	1	0	0	0	0	0	0	0	18347	1189	41	4		4	ZP4	1	238050184	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1717	238050184	11200437	84	93313											
ZP4	57829	broad.mit.edu	37	chr1	238050591	238050591	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacaagtatcgttcacggcCaacatatttcagctctcccc	5	15	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238050591	G	G	238050591	1	3	93	0	1	0	0	0	0	0	0	0	18347	609	21	4		4	ZP4	1	238050591	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	407	238050591	11200030	85	93314											
FMN2	56776	broad.mit.edu	37	chr1	240492752	240492752	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcgcaaactggaattacTacagaaattgtgtgaggtga	11	6	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240492752	A	A	240492752	3	1	93	1	0	0	0	0	1	0	0	0	6008	1522	53	5	4459	5	FMN2	1	240492752	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	2442161	240492752	8757869	86	93315											
KMO	8564	broad.mit.edu	37	chr1	241725411	241725411	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcatacccagaggtacatCatcattttcaccactagaca	4	13	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241725411	T	T	241725411	1	4	93	0	1	0	0	0	0	0	0	0	8495	841	29	4		4	KMO	1	241725411	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1232659	241725411	7525210	87	93316											
PLD5	200150	broad.mit.edu	37	chr1	242270866	242270866	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctttttgaagattgccgTcctggttcttactggaactt	10	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242270866	G	G	242270866	1	3	93	0	1	0	0	0	0	0	0	0	12144	1682	58	5		5	PLD5	1	242270866	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	545455	242270866	6979755	88	93317											
OR2C3	81472	broad.mit.edu	37	chr1	247694974	247694974	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcgcaggagtgactacGgtgtagaacagagctatgaa	13	7	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247694974	A	A	247694974	2	1	93	1	0	0	0	0	0	0	0	1	11087	1103	39	4		4	OR2C3	1	247694974	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	5424108	247694974	1555647	89	93318											
OR6F1	343169	broad.mit.edu	37	chr1	247875404	247875404	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtgctgatgatgtacacAtaggagacaaaggtgatgag	14	4	0	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247875404	G	G	247875404	2	3	93	1	0	0	0	0	0	0	0	1	11295	224	8	5		5	OR6F1	1	247875404	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	180430	247875404	1375217	90	93319											
OR2L13	284521	broad.mit.edu	37	chr1	248166596	248166596	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttggacactcatctccAcacacccatgtgtttcctac	4	16	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248166596	G	G	248166596	1	3	93	0	1	0	0	0	0	0	0	0	11100	174	6	5		5	OR2L13	1	248166596	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	291192	248166596	1084025	91	93320											
OR2M4	26245	broad.mit.edu	37	chr1	248403108	248403108	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctctcatttatagcctccGcaacaaagaagtgttcaggg	8	12	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248403108	A	A	248403108	3	1	93	1	0	0	0	0	1	0	0	0	11106	1087	38	4	880	4	OR2M4	1	248403108	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	236512	248403108	847513	92	93321											
OR2T33	391195	broad.mit.edu	37	chr1	248436738	248436738	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagagtgggatatcggagtgGgtggcagacagccgcatagc	18	7	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248436738	C	C	248436738	3	2	93	1	0	0	0	0	1	0	0	0	11118	1232	43	4	586	4	OR2T33	1	248436738	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	33630	248436738	813883	93	93322											
OR2T11	127077	broad.mit.edu	37	chr1	248789557	248789557	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcccctatgacgtccttGtttctgaggctgtagatgag	11	9	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248789557	A	A	248789557	2	1	93	1	0	0	0	0	0	0	0	1	11112	1368	48	4		4	OR2T11	1	248789557	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	352819	248789557	461064	94	93323											
TPO	7173	broad.mit.edu	37	chr2	1491667	1491667	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcaggatcagctgatgaacGaggagctgacggaaaggctc	15	8	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1491667	A	A	1491667	3	1	93	1	0	0	0	0	1	0	0	0	16534	1059	37	4	1706	4	TPO	2	1491667	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08		1491667	241707706	95	93324											
TSSC1	7260	broad.mit.edu	37	chr2	3200875	3200875	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcgagaggatatcgtataCtcaaggatattattgaaaat	9	5	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3200875	A	A	3200875	1	1	93	0	1	0	0	0	0	0	0	0	16791	580	20	3		3	TSSC1	2	3200875	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1709208	3200875	239998498	96	93325											
TSSC1	7260	broad.mit.edu	37	chr2	3261239	3261239	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgaagctgagcaacagaGcataatggataatgtcaaca	10	7	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3261239	A	A	3261239	1	1	93	0	1	0	0	0	0	0	0	0	16791	986	34	4		4	TSSC1	2	3261239	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	60364	3261239	239938134	97	93326											
KIDINS220	57498	broad.mit.edu	37	chr2	8888086	8888086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgagatgttgggagccGccagggtaataccttggcgt	16	7	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8888086	T	T	8888086	2	4	93	1	0	0	0	0	0	0	0	1	8341	1074	38	3		3	KIDINS220	2	8888086	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	5626847	8888086	234311287	98	93327											
DDX1	1653	broad.mit.edu	37	chr2	15758456	15758456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttatgtataatgttacgGgatcccagggggtgttgctt	13	5	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15758456	T	T	15758456	1	4	93	0	1	0	0	0	0	0	0	0	4374	1247	43	2		2	DDX1	2	15758456	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	6870370	15758456	227440917	99	93328											
UBXN2A	165324	broad.mit.edu	37	chr2	24222558	24222558	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagagtaagccatatcaaaGacttcattgaaaaataccaa	5	8	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24222558	C	C	24222558	3	2	93	1	0	0	0	0	1	0	0	0	17040	942	33	4	623	4	UBXN2A	2	24222558	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	8464102	24222558	218976815	100	93329											
HADHB	3032	broad.mit.edu	37	chr2	26505811	26505811	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtaaagtaaatgttcaaaCaaatcatctctgatttcttt	5	6	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26505811	G	G	26505811	1	3	93	0	1	0	0	0	0	0	0	0	7010	493	17	4		4	HADHB	2	26505811	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2283253	26505811	216693562	101	93330											
GPN1	11321	broad.mit.edu	37	chr2	27855515	27855515	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttaggtgatgaaatttattGagaaggcccagaacatgtcc	10	6	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27855515	A	A	27855515	3	1	93	1	0	0	0	0	1	0	0	0	6682	1291	45	4	471	4	GPN1	2	27855515	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1349704	27855515	215343858	102	93331											
C2orf71	388939	broad.mit.edu	37	chr2	29295088	29295088	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcaagatgctcttgtcCtgactaggcaaaatactgaa	8	9	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29295088	T	T	29295088	2	4	93	1	0	0	0	0	0	0	0	1	2213	680	24	4		4	C2orf71	2	29295088	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	1439573	29295088	213904285	103	93332											
MSH6	2956	broad.mit.edu	37	chr2	48026387	48026387	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattaagtctcagaactttgAtcttgtcatctgttacaagg	8	7	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48026387	G	G	48026387	3	3	93	1	0	0	0	0	1	0	0	0	9968	333	12	5	1279	5	MSH6	2	48026387	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	18731299	48026387	195172986	104	93333											
FBXO11	80204	broad.mit.edu	37	chr2	48040230	48040230	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttaactctaggcactaatCtcctaaaccagttcaacttg	4	12	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48040230	G	G	48040230	1	3	93	0	1	0	0	0	0	0	0	0	5784	928	32	4		4	FBXO11	2	48040230	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	13843	48040230	195159143	105	93334											
LHCGR	3973	broad.mit.edu	37	chr2	48915895	48915895	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacagggattaaaagcatcTggttcaggagcacatcgggg	13	8	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48915895	C	C	48915895	2	2	93	1	0	0	0	0	0	0	0	1	8834	1567	55	5		5	LHCGR	2	48915895	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	875665	48915895	194283478	106	93335											
XPO1	7514	broad.mit.edu	37	chr2	61705820	61705820	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaaaatttcttatacaaAaaaacacataagaaaaaggg	5	5	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61705820	C	C	61705820	1	2	93	0	1	0	0	0	0	0	0	0	17572	29	1	5		5	XPO1	2	61705820	3'UTR	SNP	A	TCGA-35-4122-01A-01D-1105-08	12789925	61705820	181493553	107	93336											
MTHFD2	10797	broad.mit.edu	37	chr2	74441241	74441241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggtatatcactccagttCctggaggtgttggccccatg	12	11	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74441241	A	A	74441241	3	1	93	1	0	0	0	0	1	0	0	0	10023	855	30	3	955	3	MTHFD2	2	74441241	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	12735421	74441241	168758132	108	93337											
INO80B	83444	broad.mit.edu	37	chr2	74682700	74682700	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaactcaaaatcaagcttGggggacaagtcctggggacc	11	10	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74682700	A	A	74682700	3	1	93	1	0	0	0	0	1	0	0	0	7817	1348	47	4	232	4	INO80B	2	74682700	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	241459	74682700	168516673	109	93338											
REG1B	5968	broad.mit.edu	37	chr2	79313951	79313951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcacatctgcatcaaccCaggtctcagggtcttcatta	6	14	6	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79313951	A	A	79313951	3	1	93	1	0	0	0	0	1	0	0	0	13319	595	21	2	346	2	REG1B	2	79313951	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	4631251	79313951	163885422	110	93339											
IMMT	10989	broad.mit.edu	37	chr2	86378641	86378641	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatcagtagagagcttgtCagctaagcaaaagagcatgt	10	7	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86378641	G	G	86378641	3	3	93	1	0	0	0	0	1	0	0	0	7788	826	29	4	1112	4	IMMT	2	86378641	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	7064690	86378641	156820732	111	93340											
RMND5A	64795	broad.mit.edu	37	chr2	87116262	87116262	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaacatttcaagccataaTcagtctccaaagagacatag	5	10	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87116262	C	C	87116262	1	2	93	0	1	0	0	0	0	0	0	0	13508	1450	50	5		5	RMND5A	2	87116262	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	737621	87116262	156083111	112	93341											
RMND5A	64795	broad.mit.edu	37	chr2	87404380	87404380	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtctagtgattctgtcttCaatgtgatacttattaagtt	8	5	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87404380	T	T	87404380	1	4	93	0	1	0	0	0	0	0	0	0	13508	841	29	4		4	RMND5A	2	87404380	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	288118	87404380	155794993	113	93342											
LONRF2	164832	broad.mit.edu	37	chr2	100915221	100915221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaactgggtgggggaagCaacacgagacagggagtaag	16	6	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100915221	A	A	100915221	1	1	93	0	1	0	0	0	0	0	0	0	8982	725	25	3		3	LONRF2	2	100915221	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	13510841	100915221	142284152	114	93343											
PDCL3	79031	broad.mit.edu	37	chr2	101192998	101192998	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccgaactttcttgtgacaAattgtctggattttttaaaa	7	6	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101192998	C	C	101192998	1	2	93	0	1	0	0	0	0	0	0	0	11722	29	1	5		5	PDCL3	2	101192998	3'UTR	SNP	A	TCGA-35-4122-01A-01D-1105-08	277777	101192998	142006375	115	93344											
SLC5A7	60482	broad.mit.edu	37	chr2	108622628	108622628	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgatggccatcccagccAtactcattggggccattgga	12	11	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108622628	G	G	108622628	3	3	93	1	0	0	0	0	1	0	0	0	14784	217	8	5	887	5	SLC5A7	2	108622628	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	7429630	108622628	134576745	116	93345											
IL1F9	56300	broad.mit.edu	37	chr2	113738817	113738817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttctgcagagttattccCctccttgccagcatcagctt	6	13	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113738817	A	A	113738817	1	1	93	0	1	0	0	0	0	0	0	0	7727	638	22	2		2	IL1F9	2	113738817	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	5116189	113738817	129460556	117	93346											
PSD4	23550	broad.mit.edu	37	chr2	113942967	113942967	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcagccctgagggctggcAgagaggaggtcctttttggc	15	10	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113942967	G	G	113942967	3	3	93	1	0	0	0	0	1	0	0	0	12755	188	7	5	1209	5	PSD4	2	113942967	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	204150	113942967	129256406	118	93347											
EPB41L5	57669	broad.mit.edu	37	chr2	120776812	120776812	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcgggtgtcccttctggAtggtactgatgttagtgtgg	16	6	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120776812	T	T	120776812	3	4	93	1	0	0	0	0	1	0	0	0	5199	333	12	5	154	5	EPB41L5	2	120776812	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	6833845	120776812	122422561	119	93348											
CCDC74B	91409	broad.mit.edu	37	chr2	130900723	130900723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtccaggtcccccagaaCctgtccccactgggttggca	10	16	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130900723	A	A	130900723	1	1	93	0	1	0	0	0	0	0	0	0	2876	522	18	3		3	CCDC74B	2	130900723	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	10123911	130900723	112298650	120	93349											
POTEE	445582	broad.mit.edu	37	chr2	131984548	131984548	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttctagatggacagcagtCactcaagtcataaatattaa	7	7	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131984548	A	A	131984548	1	1	93	0	1	0	0	0	0	0	0	0	12360	841	29	3		3	POTEE	2	131984548	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1083825	131984548	111214825	121	93350											
YSK4	80122	broad.mit.edu	37	chr2	135743482	135743482	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catttgccattttttggcaaGagttgttatctttctcatca	6	8	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135743482	C	C	135743482	3	2	93	1	0	0	0	0	1	0	0	0	17622	942	33	4	1042	4	YSK4	2	135743482	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	3758934	135743482	107455891	122	93351											
LCT	3938	broad.mit.edu	37	chr2	136587152	136587152	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcattaatgtggaaaaggGctcaaattacctgcaattta	7	7	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136587152	A	A	136587152	1	1	93	0	1	0	0	0	0	0	0	0	8765	1218	42	4		4	LCT	2	136587152	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	843670	136587152	106612221	123	93352											
SPOPL	339745	broad.mit.edu	37	chr2	139322350	139322350	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcagtagagaatgttgcaGatacccttgtccttgcagat	9	9	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139322350	A	A	139322350	3	1	93	1	0	0	0	0	1	0	0	0	15203	942	33	4	940	4	SPOPL	2	139322350	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2735198	139322350	103877023	124	93353											
TNFAIP6	7130	broad.mit.edu	37	chr2	152226549	152226549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcaaaggagtgtggtgGcgtctttacagatccaaagc	12	8	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152226549	T	T	152226549	3	4	93	1	0	0	0	0	1	0	0	0	16398	1203	42	3	424	3	TNFAIP6	2	152226549	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	12904199	152226549	90972824	125	93354											
RIF1	55183	broad.mit.edu	37	chr2	152273319	152273319	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttatttggttcgttttttAggtatccagtataattgatt	7	3	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152273319	G	G	152273319	5	3	93	1	0	0	0	0	0	0	1	0	13468	434	15	5	425	5	RIF1	2	152273319	Splice_Site	SNP	A	TCGA-35-4122-01A-01D-1105-08	46770	152273319	90926054	126	93355											
KCNJ3	3760	broad.mit.edu	37	chr2	155555401	155555401	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctcagcagcagcttgtGcccaagaagaagcggcagcg	13	13	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155555401	T	T	155555401	2	4	93	1	0	0	0	0	0	0	0	1	8122	1306	46	3		3	KCNJ3	2	155555401	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	3282082	155555401	87643972	127	93356											
ACVR1	90	broad.mit.edu	37	chr2	158622312	158622312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaggtgttcattgtaaaTgttcaacttttctgcatgtt	7	5	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158622312	C	C	158622312	1	2	93	0	1	0	0	0	0	0	0	0	220	1479	51	5		5	ACVR1	2	158622312	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	3066911	158622312	84577061	128	93357											
RBMS1	5937	broad.mit.edu	37	chr2	161160110	161160110	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaagtccttttaaagtactCagaacctcagaacaccaaag	5	11	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161160110	G	G	161160110	1	3	93	0	1	0	0	0	0	0	0	0	13256	841	29	4		4	RBMS1	2	161160110	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2537798	161160110	82039263	129	93358											
GCG	2641	broad.mit.edu	37	chr2	163000563	163000563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgattttggtctgaatcaaCcagtttataaagtccctggc	9	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163000563	A	A	163000563	3	1	93	1	0	0	0	0	1	0	0	0	6352	508	18	3	40	3	GCG	2	163000563	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1840453	163000563	80198810	130	93359											
STK39	27347	broad.mit.edu	37	chr2	169020319	169020319	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaagaattgttgctattaTtgcctcttccagaactccat	5	9	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169020319	C	C	169020319	3	2	93	1	0	0	0	0	1	0	0	0	15423	1493	52	5	1195	5	STK39	2	169020319	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	6019756	169020319	74179054	131	93360											
LRP2	4036	broad.mit.edu	37	chr2	170007412	170007412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccaagtacttaccctaGtttgggattcacagcaatag	7	10	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170007412	T	T	170007412	3	4	93	1	0	0	0	0	1	0	0	0	9043	1020	36	3	1429	3	LRP2	2	170007412	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	987093	170007412	73191961	132	93361											
KBTBD10	10324	broad.mit.edu	37	chr2	170359635	170359635	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaagctctgacagtcgaaCaaattcaagatgatgtagaa	9	7	2	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170359635	T	T	170359635	4	4	93	1	0	0	0	0	0	1	0	0	8060	479	17	4		4	KBTBD10	2	170359635	Nonsense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	352223	170359635	72839738	133	93362											
MYO3B	140469	broad.mit.edu	37	chr2	171239525	171239525	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaatttgttgtcatttttaGaatctatcccttgactggga	7	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171239525	C	C	171239525	1	2	93	0	1	0	0	0	0	0	0	0	10171	957	33	4		4	MYO3B	2	171239525	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	879890	171239525	71959848	134	93363											
DLX2	1746	broad.mit.edu	37	chr2	172966302	172966302	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagctggaaactggagtagAtggtgcggggtttccggact	16	8	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172966302	C	C	172966302	3	2	93	1	0	0	0	0	1	0	0	0	4611	333	12	5	521	5	DLX2	2	172966302	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	1726777	172966302	70233071	135	93364											
KIAA1715	80856	broad.mit.edu	37	chr2	176794913	176794913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtattatcatcaagaacatCgtgttctaaagattctgaaa	6	6	4	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176794913	A	A	176794913	3	1	93	1	0	0	0	0	1	0	0	0	8324	884	31	3	221	3	KIAA1715	2	176794913	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3828611	176794913	66404460	136	93365											
TTN	7273	broad.mit.edu	37	chr2	179453980	179453980	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaaaatttagatgaatcAgcacgggtatcaatcttgac	9	6	3	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179453980	T	T	179453980	2	4	93	1	0	0	0	0	0	0	0	1	16861	175	7	5		5	TTN	2	179453980	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	2659067	179453980	63745393	137	93366											
TTN	7273	broad.mit.edu	37	chr2	179629587	179629587	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagtgtaaaaacacaAgagagcatgcaaaactctac	7	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179629587	G	G	179629587	1	3	93	0	1	0	0	0	0	0	0	0	16861	87	3	5		5	TTN	2	179629587	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	175607	179629587	63569786	138	93367											
NCKAP1	10787	broad.mit.edu	37	chr2	183860348	183860348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctaatgctaattagaaaCaaacagcaacagcattactg	6	8	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183860348	A	A	183860348	1	1	93	0	1	0	0	0	0	0	0	0	10316	493	17	3		3	NCKAP1	2	183860348	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	4230761	183860348	59339025	139	93368											
NUP35	129401	broad.mit.edu	37	chr2	184022094	184022094	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttgggggccatttatcttGaaacattatcttgtagtaat	9	5	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184022094	T	T	184022094	1	4	93	0	1	0	0	0	0	0	0	0	10858	1305	45	3		3	NUP35	2	184022094	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	161746	184022094	59177279	140	93369											
DNAH7	56171	broad.mit.edu	37	chr2	196605668	196605668	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctgaatctgaaatttctAcatgtaagtactatgcaggt	8	6	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196605668	G	G	196605668	1	3	93	0	1	0	0	0	0	0	0	0	4646	406	14	5		5	DNAH7	2	196605668	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	12583574	196605668	46593705	141	93370											
STK17B	9262	broad.mit.edu	37	chr2	197028050	197028050	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccatttttattggaatttGaggagttgtagttagtaggc	11	3	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197028050	C	C	197028050	3	2	93	1	0	0	0	0	1	0	0	0	15409	1299	45	4	1088	4	STK17B	2	197028050	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	422382	197028050	46171323	142	93371											
ANKRD44	91526	broad.mit.edu	37	chr2	197985972	197985972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggttccaactcactaaaaCatggcataatttgcagcagt	8	9	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197985972	T	T	197985972	1	4	93	0	1	0	0	0	0	0	0	0	672	493	17	4		4	ANKRD44	2	197985972	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	957922	197985972	45213401	143	93372											
NDUFB3	4709	broad.mit.edu	37	chr2	201950245	201950245	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttttctgatgtattcttTaaaggattcaaatggggatt	8	5	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201950245	C	C	201950245	2	2	93	1	0	0	0	0	0	0	0	1	10377	1751	61	5		5	NDUFB3	2	201950245	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	3964273	201950245	41249128	144	93373											
WDR12	55759	broad.mit.edu	37	chr2	203749310	203749310	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttttcattacagaataattGaaacaataatagtacttatt	4	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203749310	A	A	203749310	1	1	93	0	1	0	0	0	0	0	0	0	17401	1305	45	4		4	WDR12	2	203749310	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1799065	203749310	39450063	145	93374											
NRP2	8828	broad.mit.edu	37	chr2	206587503	206587503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctttagtgatgataaagAggaagaacaaagacttcaaa	9	4	1	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206587503	G	G	206587503	1	3	93	0	1	0	0	0	0	0	0	0	10756	319	11	5		5	NRP2	2	206587503	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	2838193	206587503	36611870	146	93375											
PTH2R	5746	broad.mit.edu	37	chr2	209309587	209309587	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcggacaccaaatacctGtggggcttcatcttgatagg	10	9	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209309587	A	A	209309587	2	1	93	1	0	0	0	0	0	0	0	1	12866	1364	48	4		4	PTH2R	2	209309587	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	2722084	209309587	33889786	147	93376											
RPE	6120	broad.mit.edu	37	chr2	210881307	210881307	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagatagatatggccttggTtatgacagtggaaccggggt	14	6	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	210881307	C	C	210881307	3	2	93	1	0	0	0	0	1	0	0	0	13655	1725	60	5	491	5	RPE	2	210881307	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1571720	210881307	32318066	148	93377											
CPS1	1373	broad.mit.edu	37	chr2	211447431	211447431	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattgctgaggtttcaaccAaggtgaggggttttccttta	12	6	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211447431	G	G	211447431	3	3	93	1	0	0	0	0	1	0	0	0	3855	131	5	5	663	5	CPS1	2	211447431	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	566124	211447431	31751942	149	93378											
CPS1	1373	broad.mit.edu	37	chr2	211515049	211515049	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcaagtctagtattagcAtaaacctgacctgctttttt	6	9	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211515049	G	G	211515049	1	3	93	0	1	0	0	0	0	0	0	0	3855	232	8	5		5	CPS1	2	211515049	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	67618	211515049	31684324	150	93379											
FN1	2335	broad.mit.edu	37	chr2	216284104	216284104	+	Missense_Mutation	SNP	T	A	A													ccagtctctgaatcctggcaTtggtctaaaatacatggaag							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216284104	A	A	216284104	3	1	93	1	0	0	0	0	1	0	0	0	6020	1490	52	5	5926	5	FN1	2	216284104	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	4769055	216284104	26915269	151	93380	418	2									
FN1	2335	broad.mit.edu	37	chr2	216284112	216284112	+	Intron	SNP	A	T	T													tgaatcctggcattggtctaAaatacatggaaggaaaagat							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216284112	T	T	216284112	1	4	93	0	1	0	0	0	0	0	0	0	6020	29	1	5		5	FN1	2	216284112	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	8	216284112	26915261	152	93381	418	2									
RQCD1	9125	broad.mit.edu	37	chr2	219449448	219449448	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccttggagttattggtaAgttattagaattgttttgca	10	4	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219449448	G	G	219449448	1	3	93	0	1	0	0	0	0	0	0	0	13781	87	3	5		5	RQCD1	2	219449448	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3165336	219449448	23749925	153	93382											
IRS1	3667	broad.mit.edu	37	chr2	227659915	227659915	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttgaccaaatccaggtcTatgtagttaagaccattctc	6	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227659915	C	C	227659915	3	2	93	1	0	0	0	0	1	0	0	0	7910	1512	53	5	192	5	IRS1	2	227659915	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	8210467	227659915	15539458	154	93383											
DNER	92737	broad.mit.edu	37	chr2	230453149	230453149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttcaaaggataccaggCggccacccgcagagctgtta	11	13	1	1	rs139114799		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230453149	A	A	230453149	3	1	93	1	0	0	0	0	1	0	0	0	4707	768	27	3	1616	3	DNER	2	230453149	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2793234	230453149	12746224	155	93384											
SP110	3431	broad.mit.edu	37	chr2	231033760	231033760	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccaattacatcccagactCactggcaatcaacagtccaa	5	14	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231033760	G	G	231033760	1	3	93	0	1	0	0	0	0	0	0	0	15075	841	29	4		4	SP110	2	231033760	3'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	580611	231033760	12165613	156	93385											
SP140	11262	broad.mit.edu	37	chr2	231118158	231118158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgatgtacatttttaggtAtttgagtacatctttgtttt	7	3	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231118158	G	G	231118158	1	3	93	0	1	0	0	0	0	0	0	0	15076	464	16	5		5	SP140	2	231118158	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	84398	231118158	12081215	157	93386											
PASK	23178	broad.mit.edu	37	chr2	242054368	242054368	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctagatccagctcagagagaGaaccgagtatggatcactga	11	9	2	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242054368	C	C	242054368	1	2	93	0	1	0	0	0	0	0	0	0	11566	957	33	4		4	PASK	2	242054368	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	10936210	242054368	1145005	158	93387											
SEPT2	4735	broad.mit.edu	37	chr2	242283022	242283022	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaaagtatctgacacttttCaagaaaatgttacatacccc	5	9	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242283022	G	G	242283022	1	3	93	0	1	0	0	0	0	0	0	0	14177	841	29	4		4	SEPT2	2	242283022	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	228654	242283022	916351	159	93388											
CNTN4	152330	broad.mit.edu	37	chr3	3084066	3084066	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattgaagttttctgggcctCcccactggagaagaatagag	11	8	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3084066	T	T	3084066	3	4	93	1	0	0	0	0	1	0	0	0	3675	855	30	4	2541	4	CNTN4	3	3084066	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08		3084066	194938364	160	93389											
BRPF1	7862	broad.mit.edu	37	chr3	9785450	9785450	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagcttgcccatcagcgaGagacgggacgtgatggccct	15	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9785450	C	C	9785450	3	2	93	1	0	0	0	0	1	0	0	0	1529	943	33	4	2526	4	BRPF1	3	9785450	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	6701384	9785450	188236980	161	93390											
SCN10A	6336	broad.mit.edu	37	chr3	38812604	38812604	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaaaaggatctatgaattCtttcagttctcctggtatat	6	6	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38812604	G	G	38812604	1	3	93	0	1	0	0	0	0	0	0	0	14025	928	32	4		4	SCN10A	3	38812604	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	29027154	38812604	159209826	162	93391											
TGM4	7047	broad.mit.edu	37	chr3	44951740	44951740	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcaccgtgattcttaaaAggaagaccgctgccctacag	8	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44951740	T	T	44951740	3	4	93	1	0	0	0	0	1	0	0	0	15955	63	3	5	1528	5	TGM4	3	44951740	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	6139136	44951740	153070690	163	93392											
DUSP7	1849	broad.mit.edu	37	chr3	52087929	52087929	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaccttgatgcacccacaCccccctgcccagcacacagc	5	21	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52087929	T	T	52087929	1	4	93	0	1	0	0	0	0	0	0	0	4870	522	18	4		4	DUSP7	3	52087929	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	7136189	52087929	145934501	164	93393											
DNAH1	25981	broad.mit.edu	37	chr3	52426819	52426819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaccttctgctctttgacCcctccccccacccactacac	2	23	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52426819	A	A	52426819	1	1	93	0	1	0	0	0	0	0	0	0	4637	638	22	2		2	DNAH1	3	52426819	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	338890	52426819	145595611	165	93394											
STAB1	23166	broad.mit.edu	37	chr3	52546905	52546905	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgccctccgaggctgCagtccgtcagctgagccccg	13	17	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52546905	T	T	52546905	3	4	93	1	0	0	0	0	1	0	0	0	15355	710	25	4	3203	4	STAB1	3	52546905	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	120086	52546905	145475525	166	93395											
ITIH1	3697	broad.mit.edu	37	chr3	52816082	52816082	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagatctgcgacctcctgGtgagccctgagcttctggct	11	13	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52816082	T	T	52816082	5	4	93	1	0	0	0	0	0	0	1	0	7973	1275	44	3	840	3	ITIH1	3	52816082	Splice_Site	SNP	G	TCGA-35-4122-01A-01D-1105-08	269177	52816082	145206348	167	93396											
CACNA2D3	55799	broad.mit.edu	37	chr3	54905661	54905661	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgacgtggtaagtgatttGttttcaggcctcgtggagaa	14	5	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54905661	A	A	54905661	1	1	93	0	1	0	0	0	0	0	0	0	2576	1392	48	4		4	CACNA2D3	3	54905661	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2089579	54905661	143116769	168	93397											
LRTM1	57408	broad.mit.edu	37	chr3	54959111	54959111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagtctgaggaggtaaatGggaagggatttcggccagac	16	6	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54959111	T	T	54959111	3	4	93	1	0	0	0	0	1	0	0	0	9131	1348	47	2	906	2	LRTM1	3	54959111	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	53450	54959111	143063319	169	93398											
ATXN7	6314	broad.mit.edu	37	chr3	63981400	63981400	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcctgctgcttcaggggcGatggatcctgtgtgcagtat	14	10	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63981400	A	A	63981400	2	1	93	1	0	0	0	0	0	0	0	1	1219	1045	37	4		4	ATXN7	3	63981400	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	9022289	63981400	134041030	170	93399											
UBA3	9039	broad.mit.edu	37	chr3	69124610	69124610	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagctcacatcctaagcCgccagctccaatgactagaa	8	14	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69124610	T	T	69124610	3	4	93	1	0	0	0	0	1	0	0	0	16955	652	23	4	1216	4	UBA3	3	69124610	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	5143210	69124610	128897820	171	93400											
ROBO2	6092	broad.mit.edu	37	chr3	77666811	77666811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctatctcctttggacaGcagtccactgcaactcttac	6	15	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77666811	T	T	77666811	3	4	93	1	0	0	0	0	1	0	0	0	13625	962	34	3	3529	3	ROBO2	3	77666811	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	8542201	77666811	120355619	172	93401											
EPHA3	2042	broad.mit.edu	37	chr3	89521835	89521835	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttggcttgacatgaaAgatttgtaacatcttggctt	8	7	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89521835	G	G	89521835	1	3	93	0	1	0	0	0	0	0	0	0	5210	87	3	5		5	EPHA3	3	89521835	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	11855024	89521835	108500595	173	93402											
TBC1D23	55773	broad.mit.edu	37	chr3	100029218	100029218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttttagtcattcagagGcagttaatccattatgttct	7	7	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100029218	A	A	100029218	1	1	93	0	1	0	0	0	0	0	0	0	15732	1218	42	4		4	TBC1D23	3	100029218	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	10507383	100029218	97993212	174	93403											
NFKBIZ	64332	broad.mit.edu	37	chr3	101573416	101573416	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccgctttcctttccatgttCcccaggttccttcatattgc	5	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101573416	T	T	101573416	1	4	93	0	1	0	0	0	0	0	0	0	10478	870	30	4		4	NFKBIZ	3	101573416	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1544198	101573416	96449014	175	93404											
CBLB	868	broad.mit.edu	37	chr3	105400605	105400605	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtcagggatgtttgatttCttctctgaagatggaccatg	11	6	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105400605	T	T	105400605	2	4	93	1	0	0	0	0	0	0	0	1	2727	912	32	4		4	CBLB	3	105400605	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	3827189	105400605	92621825	176	93405											
ARHGAP31	57514	broad.mit.edu	37	chr3	119013825	119013825	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttggctgtgacctgacggAgtatctggaaagctcgggac	15	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119013825	G	G	119013825	3	3	93	1	0	0	0	0	1	0	0	0	882	304	11	5	76	5	ARHGAP31	3	119013825	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	13613220	119013825	79008605	177	93406											
KIAA1257	57501	broad.mit.edu	37	chr3	128696922	128696922	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgtttttctgttttttcTtgttttcctggcggatgttc	11	6	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128696922	C	C	128696922	2	2	93	1	0	0	0	0	0	0	0	1	8288	1606	56	5		5	KIAA1257	3	128696922	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	9683097	128696922	69325508	178	93407											
ATP2C1	27032	broad.mit.edu	37	chr3	130656409	130656409	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attggggggttgtaatgcccAtcagaacaacttattctttg	10	7	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130656409	G	G	130656409	1	3	93	0	1	0	0	0	0	0	0	0	1147	232	8	5		5	ATP2C1	3	130656409	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	1959487	130656409	67366021	179	93408											
ACPP	55	broad.mit.edu	37	chr3	132056351	132056351	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttttcaagaacttgagagtGagactttgaaatcagaggaa	11	4	2	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132056351	C	C	132056351	3	2	93	1	0	0	0	0	1	0	0	0	167	1291	45	4	526	4	ACPP	3	132056351	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1399942	132056351	65966079	180	93409											
PCCB	5096	broad.mit.edu	37	chr3	136019969	136019970	+	Intron	INS	-	T	T													ctctgtaagtgccacatctgINStttgtcttgcctgtcctagt							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136019970	T	T	136019969	6	5	93	0	1	1	1	0	0	0	0	0	11599	1392	48	0		0	PCCB	3	136019969	Intron	INS	-	TCGA-35-4122-01A-01D-1105-08	3963618	136019969	62002461	181	93410											
CPB1	1360	broad.mit.edu	37	chr3	148559606	148559606	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttttccttttgtttgcaAtaggttggcaaagctggaca	9	9	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148559606	G	G	148559606	1	3	93	0	1	0	0	0	0	0	0	0	3828	116	4	5		5	CPB1	3	148559606	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	12539637	148559606	49462824	182	93411											
IGSF10	285313	broad.mit.edu	37	chr3	151166370	151166370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccatttgtgtttcactgGcctcatctctgctcttggta	8	11	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151166370	T	T	151166370	3	4	93	1	0	0	0	0	1	0	0	0	7667	1203	42	3	6532	3	IGSF10	3	151166370	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2606764	151166370	46856060	183	93412											
SLITRK3	22865	broad.mit.edu	37	chr3	164906248	164906248	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaactgctcacttcctaggaGagcctcacccattcccggtg	8	15	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164906248	T	T	164906248	3	4	93	1	0	0	0	0	1	0	0	0	14858	942	33	3	566	3	SLITRK3	3	164906248	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	13739878	164906248	33116182	184	93413											
WDR49	151790	broad.mit.edu	37	chr3	167272641	167272641	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggtaaactttttatattCtgaaccaggattaattcatt	6	5	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167272641	A	A	167272641	1	1	93	0	1	0	0	0	0	0	0	0	17429	928	32	3		3	WDR49	3	167272641	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2366393	167272641	30749789	185	93414											
FNDC3B	64778	broad.mit.edu	37	chr3	172096132	172096132	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaattcacatgctactcCttcagaatccaggcagcaag	8	12	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172096132	A	A	172096132	2	1	93	1	0	0	0	0	0	0	0	1	6028	668	24	2		2	FNDC3B	3	172096132	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	4823491	172096132	25926298	186	93415											
TNFSF10	8743	broad.mit.edu	37	chr3	172227000	172227000	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtcacttatttgttgtttCtcttacttggagaagacaat	7	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172227000	G	G	172227000	1	3	93	0	1	0	0	0	0	0	0	0	16424	928	32	4		4	TNFSF10	3	172227000	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	130868	172227000	25795430	187	93416											
ECT2	1894	broad.mit.edu	37	chr3	172534392	172534392	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtacagtagaaaaactttTgccatatatttggctttttt	6	5	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172534392	C	C	172534392	1	2	93	0	1	0	0	0	0	0	0	0	4941	1827	63	5		5	ECT2	3	172534392	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	307392	172534392	25488038	188	93417											
YEATS2	55689	broad.mit.edu	37	chr3	183493769	183493769	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggaggaggaggaggaggagGaggcggcagtggcagcggtg	25	4	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183493769	C	C	183493769	3	2	93	1	0	0	0	0	1	0	0	0	17599	1174	41	4	2501	4	YEATS2	3	183493769	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	10959377	183493769	14528661	189	93418											
EHHADH	1962	broad.mit.edu	37	chr3	184910072	184910072	+	Frame_Shift_Del	DEL	C	-	-													attctttcaggggagggtttCcctgagaagccagttttttt							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	184910072	-	-	184910072	7	5	93	1	0	1	0	1	0	0	0	0	5022	855	30	0	61	0	EHHADH	3	184910072	Frame_Shift_Del	DEL	C	TCGA-35-4122-01A-01D-1105-08	1416303	184910072	13112358	190	93419											
FGF12	2257	broad.mit.edu	37	chr3	192125779	192125779	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggagaaagagggcgtccCctctggggagcccactctcc	15	13	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192125779	T	T	192125779	1	4	93	0	1	0	0	0	0	0	0	0	5898	638	22	4		4	FGF12	3	192125779	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	7215707	192125779	5896651	191	93420											
ATP13A3	79572	broad.mit.edu	37	chr3	194154401	194154401	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttaggttgaaaccactataGactatataatatgattttat	5	5	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	194154401	C	C	194154401	1	2	93	0	1	0	0	0	0	0	0	0	1129	957	33	4		4	ATP13A3	3	194154401	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2028622	194154401	3868029	192	93421											
PDE6B	5158	broad.mit.edu	37	chr4	650595	650595	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaagacatgaggtcactctCcccggccacacgcccgggcc	11	17	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	650595	A	A	650595	1	1	93	0	1	0	0	0	0	0	0	0	11740	870	30	3		3	PDE6B	4	650595	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08		650595	190503681	193	93422											
GAK	2580	broad.mit.edu	37	chr4	898403	898403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacagaggccttggcagcCgcgtgtggagggagccacta	15	12	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	898403	T	T	898403	1	4	93	0	1	0	0	0	0	0	0	0	6257	667	23	4		4	GAK	4	898403	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	247808	898403	190255873	194	93423											
EVC	2121	broad.mit.edu	37	chr4	5747075	5747075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctaatcgataatgtgcgtGccagactttctttcctgtac	8	10	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5747075	T	T	5747075	1	4	93	0	1	0	0	0	0	0	0	0	5327	1334	46	3		3	EVC	4	5747075	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	4848672	5747075	185407201	195	93424											
SLIT2	9353	broad.mit.edu	37	chr4	20570537	20570537	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaattgtgaagtcaacgttGatgattgtgaagataatgac	10	3	1	6			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20570537	A	A	20570537	3	1	93	1	0	0	0	0	1	0	0	0	14854	1290	45	4	3112	4	SLIT2	4	20570537	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	14823462	20570537	170583739	196	93425											
SEL1L3	23231	broad.mit.edu	37	chr4	25831720	25831720	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaaaatcgcacttacCtaatggtctgattgtggtag	9	6	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25831720	G	G	25831720	3	3	93	1	0	0	0	0	1	0	0	0	14125	695	24	4	2317	4	SEL1L3	4	25831720	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	5261183	25831720	165322556	197	93426											
PCDH7	5099	broad.mit.edu	37	chr4	30732466	30732466	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actgtgatgacctttctactCcgaaacctgctggagcctgc	9	13	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30732466	G	G	30732466	1	3	93	0	1	0	0	0	0	0	0	0	11610	870	30	4		4	PCDH7	4	30732466	3'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	4900746	30732466	160421810	198	93427											
TLR10	81793	broad.mit.edu	37	chr4	38776144	38776144	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtctgttaagatattattGgcaaaatttaaatattggaa	7	3	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38776144	T	T	38776144	2	4	93	1	0	0	0	0	0	0	0	1	16073	1335	47	2		2	TLR10	4	38776144	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	8043678	38776144	152378132	199	93428											
GABRA4	2557	broad.mit.edu	37	chr4	46976211	46976211	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaactttattgctaacaCcaagtagcatgtcggcttta	7	8	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46976211	A	A	46976211	1	1	93	0	1	0	0	0	0	0	0	0	6223	522	18	3		3	GABRA4	4	46976211	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	8200067	46976211	144178065	200	93429											
FRYL	285527	broad.mit.edu	37	chr4	48566058	48566058	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacagcccagtacatcaggTtgctctgatcagggttcagc	10	13	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48566058	A	A	48566058	3	1	93	1	0	0	0	0	1	0	0	0	6124	1725	60	5	5674	5	FRYL	4	48566058	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1589847	48566058	142588218	201	93430											
SCFD2	152579	broad.mit.edu	37	chr4	53751949	53751949	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacgatgccacaagatcttTgaccattttcacttcagaga	6	11	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53751949	C	C	53751949	3	2	93	1	0	0	0	0	1	0	0	0	14002	1821	63	5	135	5	SCFD2	4	53751949	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	5185891	53751949	137402327	202	93431											
KIT	3815	broad.mit.edu	37	chr4	55599403	55599403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgcaaaggatttttaGtttcaactttcgataaaaat	6	6	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55599403	T	T	55599403	1	4	93	0	1	0	0	0	0	0	0	0	8400	1044	36	3		3	KIT	4	55599403	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1847454	55599403	135554873	203	93432											
LPHN3	23284	broad.mit.edu	37	chr4	62849254	62849254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttatctggtcggctatGggatgcctgcactcattgtg	11	9	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62849254	T	T	62849254	3	4	93	1	0	0	0	0	1	0	0	0	9004	1348	47	2	3027	2	LPHN3	4	62849254	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	7249851	62849254	128305022	204	93433											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68810213	68810213	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacttgcattattctatgaTaaaaagaagtttacctgact	5	8	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68810213	A	A	68810213	1	1	93	0	1	0	0	0	0	0	0	0	16362	1421	49	5		5	TMPRSS11A	4	68810213	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	5960959	68810213	122344063	205	93434											
GC	2638	broad.mit.edu	37	chr4	72631409	72631409	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatatatgtaaatttccagGcttttagacttccatttaat	4	6	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72631409	A	A	72631409	1	1	93	0	1	0	0	0	0	0	0	0	6344	1218	42	4		4	GC	4	72631409	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	3821196	72631409	118522867	206	93435											
SDAD1	55153	broad.mit.edu	37	chr4	76894544	76894544	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaaagcggcaactaataTctaaacaccaatgagaaaaa	6	8	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76894544	C	C	76894544	3	2	93	1	0	0	0	0	1	0	0	0	14063	1449	50	5	1486	5	SDAD1	4	76894544	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	4263135	76894544	114259732	207	93436											
FRAS1	80144	broad.mit.edu	37	chr4	79360062	79360062	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttttttatagatactcAgctgtgtttgaaactgatgg	9	4	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79360062	T	T	79360062	2	4	93	1	0	0	0	0	0	0	0	1	6102	175	7	5		5	FRAS1	4	79360062	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	2465518	79360062	111794214	208	93437											
FRAS1	80144	broad.mit.edu	37	chr4	79440334	79440337	+	Intron	DEL	TAAG	-	-													agttcctttatttttttaaaTaagtaagtgcaatcatgggc							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79440337	-	-	79440334	6	5	93	0	1	1	0	1	0	0	0	0	6102	1421	49	0		0	FRAS1	4	79440334	Intron	DEL	TAAG	TCGA-35-4122-01A-01D-1105-08	80272	79440334	111713942	209	93438											
FRAS1	80144	broad.mit.edu	37	chr4	79455668	79455668	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttgtgtattcacttaacaCtgaatttcagctctgcaata	6	8	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79455668	T	T	79455668	3	4	93	1	0	0	0	0	1	0	0	0	6102	565	20	4	11348	4	FRAS1	4	79455668	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	15334	79455668	111698608	210	93439											
KLHL8	57563	broad.mit.edu	37	chr4	88091354	88091354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacgctagataaagaagCcattccatcattgccaccta	5	14	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88091354	A	A	88091354	3	1	93	1	0	0	0	0	1	0	0	0	8466	739	26	3	460	3	KLHL8	4	88091354	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	8635686	88091354	103062922	211	93440											
IBSP	3381	broad.mit.edu	37	chr4	88732418	88732418	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taattcaaataagacgcctaGaataaggctgtcagtattgt	8	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88732418	C	C	88732418	1	2	93	0	1	0	0	0	0	0	0	0	7545	957	33	4		4	IBSP	4	88732418	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	641064	88732418	102421858	212	93441											
EIF4E	1977	broad.mit.edu	37	chr4	99812280	99812280	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagataaaaaaatagatgaaCattcattaactgtttaactc	5	5	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99812280	T	T	99812280	1	4	93	0	1	0	0	0	0	0	0	0	5070	493	17	4		4	EIF4E	4	99812280	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	11079862	99812280	91341996	213	93442											
SYNPO2	171024	broad.mit.edu	37	chr4	119944806	119944806	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgattatagcttttactacAtatataacttgtcatttatg	4	5	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119944806	G	G	119944806	1	3	93	0	1	0	0	0	0	0	0	0	15576	232	8	5		5	SYNPO2	4	119944806	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	20132526	119944806	71209470	214	93443											
PCDH18	54510	broad.mit.edu	37	chr4	138452918	138452918	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgggtagagtgatcacatCaaactctatggaacagttca	10	7	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138452918	A	A	138452918	3	1	93	1	0	0	0	0	1	0	0	0	11607	826	29	3	3098	3	PCDH18	4	138452918	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	18508112	138452918	52701358	215	93444											
USP38	84640	broad.mit.edu	37	chr4	144116948	144116948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaaaggactggcagctGtccagaagtttactattttg	10	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144116948	T	T	144116948	3	4	93	1	0	0	0	0	1	0	0	0	17196	1377	48	3	908	3	USP38	4	144116948	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	5664030	144116948	47037328	216	93445											
TTC29	83894	broad.mit.edu	37	chr4	147830161	147830161	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccttctgtgctctgcccAcagtcccaccacttaccttt	5	18	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147830161	G	G	147830161	1	3	93	0	1	0	0	0	0	0	0	0	16822	174	6	5		5	TTC29	4	147830161	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3713213	147830161	43324115	217	93446											
NAF1	92345	broad.mit.edu	37	chr4	164085484	164085484	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgatatacaagaggaagaaGacgacgatgaggaagatgaa	14	3	0	7			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164085484	C	C	164085484	3	2	93	1	0	0	0	0	1	0	0	0	10234	942	33	4	1228	4	NAF1	4	164085484	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	16255323	164085484	27068792	218	93447											
TLL1	7092	broad.mit.edu	37	chr4	166910513	166910513	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatattttacattttaaTtcaacttttctttttttagc	3	5	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166910513	C	C	166910513	1	2	93	0	1	0	0	0	0	0	0	0	16068	1508	52	5		5	TLL1	4	166910513	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2825029	166910513	24243763	219	93448											
DDX60	55601	broad.mit.edu	37	chr4	169169232	169169232	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggatgaatgtccagttaTgctactgtgaattgtggcat	11	6	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169169232	C	C	169169232	1	2	93	0	1	0	0	0	0	0	0	0	4411	1479	51	5		5	DDX60	4	169169232	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2258719	169169232	21985044	220	93449											
DDX60L	91351	broad.mit.edu	37	chr4	169336592	169336592	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgcagcacagggatgaaaAtgatcaaaataaacatcatc	8	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169336592	T	T	169336592	3	4	93	1	0	0	0	0	1	0	0	0	4412	98	4	5	2242	5	DDX60L	4	169336592	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	167360	169336592	21817684	221	93450											
NEK1	4750	broad.mit.edu	37	chr4	170359226	170359226	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagctcattttgactcattaGaacataccttctaaatttcc	3	10	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170359226	C	C	170359226	1	2	93	0	1	0	0	0	0	0	0	0	10416	957	33	4		4	NEK1	4	170359226	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1022634	170359226	20795050	222	93451											
CLCN3	1182	broad.mit.edu	37	chr4	170613432	170613432	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaatatcttttcctacctCtttccaaagtatagcacaaa	4	10	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170613432	G	G	170613432	2	3	93	1	0	0	0	0	0	0	0	1	3495	900	32	4		4	CLCN3	4	170613432	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	254206	170613432	20540844	223	93452											
FBXO8	26269	broad.mit.edu	37	chr4	175162417	175162417	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaattgctctttatttaTgcattttaacaattaagcaa	3	5	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175162417	C	C	175162417	1	2	93	0	1	0	0	0	0	0	0	0	5818	1479	51	5		5	FBXO8	4	175162417	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	4548985	175162417	15991859	224	93453											
ADAM29	11086	broad.mit.edu	37	chr4	175897288	175897288	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggattgttgaaattgtagtCgtcattgataattatctgta	9	3	2	2	rs114696296	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175897288	G	G	175897288	2	3	93	1	0	0	0	0	0	0	0	1	247	871	31	4		4	ADAM29	4	175897288	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	734871	175897288	15256988	225	93454											
ADAM29	11086	broad.mit.edu	37	chr4	175899307	175899307	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaactgtatccagaaaaggTacattaaaaaaataattcct	4	6	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175899307	A	A	175899307	1	1	93	0	1	0	0	0	0	0	0	0	247	1653	57	5		5	ADAM29	4	175899307	3'UTR	SNP	T	TCGA-35-4122-01A-01D-1105-08	2019	175899307	15254969	226	93455											
ODZ3	55714	broad.mit.edu	37	chr4	183696312	183696312	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccgcaagctcagggtacgTacgtgttgtggagcaggaga	17	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183696312	A	A	183696312	1	1	93	0	1	0	0	0	0	0	0	0	10931	1653	57	5		5	ODZ3	4	183696312	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	7797005	183696312	7457964	227	93456											
ACSL1	2180	broad.mit.edu	37	chr4	185687190	185687190	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggttacacacctggaagtCggcggcctctccgccaaggg	14	13	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185687190	T	T	185687190	1	4	93	0	1	0	0	0	0	0	0	0	177	899	31	4		4	ACSL1	4	185687190	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1990878	185687190	5467086	228	93457											
TRIML2	205860	broad.mit.edu	37	chr4	189012520	189012520	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcttggattttacacaCagaagattaagggctaacag	11	6	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189012520	G	G	189012520	1	3	93	0	1	0	0	0	0	0	0	0	16676	493	17	4		4	TRIML2	4	189012520	3'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	3325330	189012520	2141756	229	93458											
TRIML1	339976	broad.mit.edu	37	chr4	189065212	189065212	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgagccactcttgcttcagTgtccagaggccaccaccaca	9	16	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189065212	C	C	189065212	3	2	93	1	0	0	0	0	1	0	0	0	16675	1696	59	5	799	5	TRIML1	4	189065212	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	52692	189065212	2089064	230	93459											
IRX1	79192	broad.mit.edu	37	chr5	3600678	3600678	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaggcctgggacctctccCgcccgtctctccgtcctaac	10	18	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3600678	G	G	3600678	1	3	93	0	1	0	0	0	0	0	0	0	7913	667	23	4		4	IRX1	5	3600678	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08		3600678	177314582	231	93460											
ADCY2	108	broad.mit.edu	37	chr5	7414680	7414680	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttccatgtatttttttatctCctcaggaagttgaagaccat	6	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7414680	G	G	7414680	1	3	93	0	1	0	0	0	0	0	0	0	294	870	30	4		4	ADCY2	5	7414680	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	3814002	7414680	173500580	232	93461											
DNAH5	1767	broad.mit.edu	37	chr5	13894780	13894780	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatctttgcaaaagtgttttCtaaataagcctcaatattca	5	7	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13894780	A	A	13894780	4	1	93	1	0	0	0	0	0	1	0	0	4644	922	32	3	11720	3	DNAH5	5	13894780	Nonsense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	6480100	13894780	167020480	233	93462											
TRIO	7204	broad.mit.edu	37	chr5	14390957	14390957	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttctatatgaaagtttatCatgcgttgacttgttatgat	7	4	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14390957	G	G	14390957	1	3	93	0	1	0	0	0	0	0	0	0	16677	841	29	4		4	TRIO	5	14390957	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	496177	14390957	166524303	234	93463											
FBXL7	23194	broad.mit.edu	37	chr5	15936565	15936565	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtctctttgtgcaggatgctCcaaagtgacctgcatcagct	10	11	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15936565	G	G	15936565	3	3	93	1	0	0	0	0	1	0	0	0	5781	855	30	4	760	4	FBXL7	5	15936565	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1545608	15936565	164978695	235	93464											
PRDM9	56979	broad.mit.edu	37	chr5	23518003	23518003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttttagtcaaacctccttgGatggccttaagagtggaaca	9	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23518003	T	T	23518003	3	4	93	1	0	0	0	0	1	0	0	0	12569	1183	41	3	329	3	PRDM9	5	23518003	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	7581438	23518003	157397257	236	93465											
CDH9	1007	broad.mit.edu	37	chr5	26890073	26890073	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttgggttatctgcaaCgagaacacgtgtaagatttc	10	6	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26890073	G	G	26890073	1	3	93	0	1	0	0	0	0	0	0	0	3147	551	19	4		4	CDH9	5	26890073	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	3372070	26890073	154025187	237	93466											
TTC23L	153657	broad.mit.edu	37	chr5	34867061	34867062	+	Missense_Mutation	DNP	GT	TA	TA													ttgaaaaggcaattggcgatGttattgctgccaagggtgat							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	34867062	TA	TA	34867061	3	4	93	1	0	0	0	0	1	0	0	0	16817	1377	48	3	749	3	TTC23L	5	34867061	Missense_Mutation	DNP	GT	TCGA-35-4122-01A-01D-1105-08	7976988	34867061	146048199	238	93467											
TTC33	23548	broad.mit.edu	37	chr5	40730417	40730417	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagttaactgtagtgcttCatcccacttctgaattgcct	8	10	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40730417	T	T	40730417	3	4	93	1	0	0	0	0	1	0	0	0	16828	835	29	4	550	4	TTC33	5	40730417	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	5863356	40730417	140184843	239	93468											
GHR	2690	broad.mit.edu	37	chr5	42465800	42465800	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcttcaggccactgtaaTgtgaaaaaaaagatctatca	8	8	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42465800	C	C	42465800	1	2	93	0	1	0	0	0	0	0	0	0	6435	1479	51	5		5	GHR	5	42465800	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1735383	42465800	138449460	240	93469											
MGC42105	167359	broad.mit.edu	37	chr5	43206960	43206960	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggctatttagcaacatgCacaaacaagaacggcagctt	8	10	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43206960	T	T	43206960	1	4	93	0	1	0	0	0	0	0	0	0	9645	725	25	4		4	MGC42105	5	43206960	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	741160	43206960	137708300	241	93470											
HCN1	348980	broad.mit.edu	37	chr5	45645554	45645554	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattgacagtcccagtcctAaaattcatgatcaggtccaa	6	11	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45645554	G	G	45645554	2	3	93	1	0	0	0	0	0	0	0	1	7062	359	13	5		5	HCN1	5	45645554	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	2438594	45645554	135269706	242	93471											
SLC38A9	153129	broad.mit.edu	37	chr5	54929793	54929793	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtacacacattcataaaaTggaatgtcttctgcttattt	5	8	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54929793	C	C	54929793	1	2	93	0	1	0	0	0	0	0	0	0	14725	1479	51	5		5	SLC38A9	5	54929793	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	9284239	54929793	125985467	243	93472											
ANKRD55	79722	broad.mit.edu	37	chr5	55412547	55412547	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggttgctgtccattcccAactccagcagtgactggaca	10	13	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55412547	C	C	55412547	3	2	93	1	0	0	0	0	1	0	0	0	681	131	5	5	1000	5	ANKRD55	5	55412547	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	482754	55412547	125502713	244	93473											
PDE4D	5144	broad.mit.edu	37	chr5	59064319	59064319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactgttaaagtgtccgggCttgtctgctgagccattttc	11	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59064319	A	A	59064319	1	1	93	0	1	0	0	0	0	0	0	0	11736	812	28	3		3	PDE4D	5	59064319	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	3651772	59064319	121850941	245	93474											
NAIP	4671	broad.mit.edu	37	chr5	70308489	70308489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccccagtgaagtaaaacCcagcggccgccatctcctgt	8	15	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70308489	A	A	70308489	3	1	93	1	0	0	0	0	1	0	0	0	10241	623	22	2	4013	2	NAIP	5	70308489	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	11244170	70308489	110606771	246	93475											
BDP1	55814	broad.mit.edu	37	chr5	70818153	70818153	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttcctagttcagcacaaAtgacaagaaggaaattccaa	7	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70818153	G	G	70818153	3	3	93	1	0	0	0	0	1	0	0	0	1400	101	4	5	5119	5	BDP1	5	70818153	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	509664	70818153	110097107	247	93476											
PTCD2	79810	broad.mit.edu	37	chr5	71622351	71622351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccctctgcagtgagccgGggttgggcttccccatcttc	12	15	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71622351	T	T	71622351	1	4	93	0	1	0	0	0	0	0	0	0	12834	1247	43	2		2	PTCD2	5	71622351	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	804198	71622351	109292909	248	93477											
ARRDC3	57561	broad.mit.edu	37	chr5	90669504	90669504	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggagtaggtacttacctcTgaataaagaggtggaggcaa	13	5	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90669504	C	C	90669504	2	2	93	1	0	0	0	0	0	0	0	1	988	1567	55	5		5	ARRDC3	5	90669504	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	19047153	90669504	90245756	249	93478											
FAM170A	340069	broad.mit.edu	37	chr5	118969934	118969934	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatggaagaagtgaccctttCtgaggttgtgagggtaggta	16	4	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118969934	T	T	118969934	3	4	93	1	0	0	0	0	1	0	0	0	5534	913	32	4	501	4	FAM170A	5	118969934	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	28300430	118969934	61945326	250	93479											
CDC23	8697	broad.mit.edu	37	chr5	137527079	137527079	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctatgtagaatgatgggtgTatgggaggctctagaccatg	14	6	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137527079	C	C	137527079	1	2	93	0	1	0	0	0	0	0	0	0	3091	1653	57	5		5	CDC23	5	137527079	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	18557145	137527079	43388181	251	93480											
PCDHB15	56121	broad.mit.edu	37	chr5	140627391	140627391	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggaccctttcccagagcTaccagtacgaggtgtgtctg	12	13	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140627391	C	C	140627391	3	2	93	1	0	0	0	0	1	0	0	0	11634	1522	53	5	2247	5	PCDHB15	5	140627391	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	3100312	140627391	40287869	252	93481											
PCDHGA12	26025	broad.mit.edu	37	chr5	140812327	140812327	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgtggccgtggccgacagCatcccccaagtcctggcgga	13	16	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140812327	G	G	140812327	3	3	93	1	0	0	0	0	1	0	0	0	11647	709	25	4	2003	4	PCDHGA12	5	140812327	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	184936	140812327	40102933	253	93482											
ITK	3702	broad.mit.edu	37	chr5	156673184	156673184	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagggccttcatcatttTgtttgtttttagagatactg	9	5	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156673184	G	G	156673184	1	3	93	0	1	0	0	0	0	0	0	0	7979	1827	63	5		5	ITK	5	156673184	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	15860857	156673184	24242076	254	93483											
GABRG2	2566	broad.mit.edu	37	chr5	161580443	161580443	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagatgtctgttctaagtcCacttaaataatcctctatgt	6	8	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161580443	A	A	161580443	1	1	93	0	1	0	0	0	0	0	0	0	6232	609	21	2		2	GABRG2	5	161580443	3'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	4907259	161580443	19334817	255	93484											
CCDC99	54908	broad.mit.edu	37	chr5	169030907	169030907	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgatataaaaagacttttaGacagccagtgacttaatatt	6	5	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169030907	A	A	169030907	1	1	93	0	1	0	0	0	0	0	0	0	2904	957	33	4		4	CCDC99	5	169030907	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	7450464	169030907	11884353	256	93485											
C5orf25	375484	broad.mit.edu	37	chr5	175735630	175735630	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtcccttcatggtccAcaagacttctggagctccag	9	13	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175735630	T	T	175735630	1	4	93	0	1	0	0	0	0	0	0	0	2311	174	6	5		5	C5orf25	5	175735630	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	6704723	175735630	5179630	257	93486											
MGAT4B	11282	broad.mit.edu	37	chr5	179228997	179228997	+	Intron	DEL	G	-	-													tggtaggcaagccgtcacgaGggggcggtctagagccaccc							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179228997	-	-	179228997	6	5	93	0	1	1	0	1	0	0	0	0	9639	1000	35	0		0	MGAT4B	5	179228997	Intron	DEL	G	TCGA-35-4122-01A-01D-1105-08	3493367	179228997	1686263	258	93487											
RNF130	55819	broad.mit.edu	37	chr5	179393914	179393914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggccaagggagttgtcgcCggcgaggtcgccgagggctg	19	10	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179393914	A	A	179393914	3	1	93	1	0	0	0	0	1	0	0	0	13549	652	23	1	229	1	RNF130	5	179393914	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	164917	179393914	1521346	259	93488											
BTNL8	79908	broad.mit.edu	37	chr5	180377285	180377285	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttcctggactatgagtGtgggaccatctccttcttca	10	11	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180377285	C	C	180377285	3	2	93	1	0	0	0	0	1	0	0	0	1577	1377	48	4	1430	4	BTNL8	5	180377285	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	983371	180377285	537975	260	93489											
RIPK1	8737	broad.mit.edu	37	chr6	3085519	3085519	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgagcagcagttgataAtgtgcataaaatctgggaac	11	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3085519	G	G	3085519	3	3	93	1	0	0	0	0	1	0	0	0	13491	101	4	5	733	5	RIPK1	6	3085519	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08		3085519	168029548	261	93490											
F13A1	2162	broad.mit.edu	37	chr6	6248564	6248564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgcagaccccacacggCtgactttgatgggattccct	9	14	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6248564	A	A	6248564	3	1	93	1	0	0	0	0	1	0	0	0	5383	797	28	3	1459	3	F13A1	6	6248564	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3163045	6248564	164866503	262	93491											
CAGE1	285782	broad.mit.edu	37	chr6	7339643	7339643	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaacattctgtgttctGgtggctaagacaatgatttc	9	8	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7339643	A	A	7339643	1	1	93	0	1	0	0	0	0	0	0	0	2598	1363	47	4		4	CAGE1	6	7339643	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1091079	7339643	163775424	263	93492											
TFAP2A	7020	broad.mit.edu	37	chr6	10410284	10410284	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtgaggcagcccccggtgCgtgtgcaggagcccagactc	16	13	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10410284	G	G	10410284	2	3	93	1	0	0	0	0	0	0	0	1	15910	755	27	4		4	TFAP2A	6	10410284	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	3070641	10410284	160704783	264	93493											
HIVEP1	3096	broad.mit.edu	37	chr6	12122960	12122960	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaattttgaaaatcatAagaaattttactgttctgag	7	3	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12122960	T	T	12122960	4	4	93	1	0	0	0	0	0	1	0	0	7253	363	13	5	2942	5	HIVEP1	6	12122960	Nonsense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	1712676	12122960	158992107	265	93494											
FAM8A1	51439	broad.mit.edu	37	chr6	17602966	17602966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaggacatttgcagaagGgttttaatttctactgttta	10	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17602966	T	T	17602966	1	4	93	0	1	0	0	0	0	0	0	0	5702	1247	43	2		2	FAM8A1	6	17602966	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	5480006	17602966	153512101	266	93495											
SLC17A1	6568	broad.mit.edu	37	chr6	25812052	25812052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggtaaagcagtactgaCacacagagtaatccctatgc	10	9	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25812052	A	A	25812052	1	1	93	0	1	0	0	0	0	0	0	0	14529	493	17	3		3	SLC17A1	6	25812052	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	8209086	25812052	145303015	267	93496											
BTN3A2	11118	broad.mit.edu	37	chr6	26370529	26370529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagctatccagaatttaGgccaaattatccttccacag	7	11	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26370529	T	T	26370529	1	4	93	0	1	0	0	0	0	0	0	0	1573	1015	35	2		2	BTN3A2	6	26370529	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	558477	26370529	144744538	268	93497											
OR2B6	26212	broad.mit.edu	37	chr6	27925333	27925333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagcttttcatatttctGgccttgggggctactgaata	10	10	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27925333	T	T	27925333	2	4	93	1	0	0	0	0	0	0	0	1	11085	1335	47	2		2	OR2B6	6	27925333	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	1554804	27925333	143189734	269	93498											
MDC1	9656	broad.mit.edu	37	chr6	30679383	30679383	+	Intron	DEL	C	-	-													tagcctttacccttcaaggaCcaccagtctaatctcccagc							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30679383	-	-	30679383	6	5	93	0	1	1	0	1	0	0	0	0	9496	522	18	0		0	MDC1	6	30679383	Intron	DEL	C	TCGA-35-4122-01A-01D-1105-08	2754050	30679383	140435684	270	93499											
MSH5	4439	broad.mit.edu	37	chr6	31721239	31721239	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcccagggtggagggcagGgaggtggggaaggaggttga	24	4	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31721239	A	A	31721239	1	1	93	0	1	0	0	0	0	0	0	0	9967	1247	43	4		4	MSH5	6	31721239	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1041856	31721239	139393828	271	93500											
COL11A2	1302	broad.mit.edu	37	chr6	33156855	33156855	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcggacaggtcggcccagctCcaggcccagctgtcggacac	14	16	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33156855	G	G	33156855	3	3	93	1	0	0	0	0	1	0	0	0	3700	864	30	4	5198	4	COL11A2	6	33156855	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1435616	33156855	137958212	272	93501											
TAPBP	6892	broad.mit.edu	37	chr6	33272134	33272134	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcaggctgggatggtgaaTtcgacaggcatagcgtgccc	16	9	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33272134	G	G	33272134	3	3	93	1	0	0	0	0	1	0	0	0	15671	1493	52	5	392	5	TAPBP	6	33272134	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	115279	33272134	137842933	273	93502											
ITPR3	3710	broad.mit.edu	37	chr6	33636533	33636533	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctctctgcagctgtgaaCtctgtgcctgttatgtgccc	10	12	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33636533	T	T	33636533	1	4	93	0	1	0	0	0	0	0	0	0	7992	580	20	4		4	ITPR3	6	33636533	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	364399	33636533	137478534	274	93503											
RPS10	6204	broad.mit.edu	37	chr6	34386050	34386050	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaactggttgacaggaccCacccatactatatgacatcc	9	12	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34386050	T	T	34386050	1	4	93	0	1	0	0	0	0	0	0	0	13731	609	21	4		4	RPS10	6	34386050	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	749517	34386050	136729017	275	93504											
PPARD	5467	broad.mit.edu	37	chr6	35393585	35393585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactgcctttctgagctccCtggcgtgccctgtgtcccca	9	18	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35393585	A	A	35393585	1	1	93	0	1	0	0	0	0	0	0	0	12394	696	24	2		2	PPARD	6	35393585	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1007535	35393585	135721482	276	93505											
ZFAND3	60685	broad.mit.edu	37	chr6	38120333	38120333	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtttaggggttgatggtgGttgaaattgatttctggctg	15	2	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38120333	T	T	38120333	1	4	93	0	1	0	0	0	0	0	0	0	17755	1276	44	3		3	ZFAND3	6	38120333	3'UTR	SNP	G	TCGA-35-4122-01A-01D-1105-08	2726748	38120333	132994734	277	93506											
PPP2R5D	5528	broad.mit.edu	37	chr6	42974720	42974720	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtcctctttgacttcGtgtcagacccactcagtgac	9	13	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42974720	A	A	42974720	3	1	93	1	0	0	0	0	1	0	0	0	12496	1145	40	4	408	4	PPP2R5D	6	42974720	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	4854387	42974720	128140347	278	93507											
ZNF318	24149	broad.mit.edu	37	chr6	43310547	43310547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctgatccaactgcttaGtggctgactgggggctttcg	15	9	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43310547	T	T	43310547	3	4	93	1	0	0	0	0	1	0	0	0	17962	1029	36	3	3712	3	ZNF318	6	43310547	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	335827	43310547	127804520	279	93508											
TDRD6	221400	broad.mit.edu	37	chr6	46661230	46661230	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acccctgcaaagataaaattGatactgaggaactggaaggt	10	7	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46661230	A	A	46661230	3	1	93	1	0	0	0	0	1	0	0	0	15856	1290	45	4	5367	4	TDRD6	6	46661230	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	3350683	46661230	124453837	280	93509											
DST	667	broad.mit.edu	37	chr6	56350220	56350220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaatgagagcctgtagggCatctgtgaattgtccagaaa	11	7	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56350220	A	A	56350220	3	1	93	1	0	0	0	0	1	0	0	0	4823	710	25	3	2351	3	DST	6	56350220	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	9688990	56350220	114764847	281	93510											
EYS	346007	broad.mit.edu	37	chr6	66115212	66115212	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcaaattcctcttttcCaaaaaagcagagaaacacaa	6	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66115212	T	T	66115212	4	4	93	1	0	0	0	0	0	1	0	0	5375	595	21	4	8637	4	EYS	6	66115212	Nonsense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	9764992	66115212	104999855	282	93511											
C6orf57	135154	broad.mit.edu	37	chr6	71298356	71298357	+	Missense_Mutation	DNP	GG	TT	TT													atccagtgaccaaagaaaaaGgtggacccaggggcccagaa							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	71298357	TT	TT	71298356	3	4	93	1	0	0	0	0	1	0	0	0	2390	1000	35	2	266	2	C6orf57	6	71298356	Missense_Mutation	DNP	GG	TCGA-35-4122-01A-01D-1105-08	5183144	71298356	99816711	283	93512											
C6orf221	154288	broad.mit.edu	37	chr6	74073210	74073210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactcccgcaggccgcttgGgtgactgtccttttttggag	12	12	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74073210	T	T	74073210	1	4	93	0	1	0	0	0	0	0	0	0	2378	1247	43	2		2	C6orf221	6	74073210	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2774854	74073210	97041857	284	93513											
MYO6	4646	broad.mit.edu	37	chr6	76566994	76566994	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtagagtttcttttgtgaGtatatatttgtttcatattt	7	2	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76566994	A	A	76566994	1	1	93	0	1	0	0	0	0	0	0	0	10175	1044	36	4		4	MYO6	6	76566994	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2493784	76566994	94548073	285	93514											
SNAP91	9892	broad.mit.edu	37	chr6	84269834	84269834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactgacctgcgtgccagGtacagcggcagctccaaagg	13	12	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84269834	T	T	84269834	3	4	93	1	0	0	0	0	1	0	0	0	14947	1261	44	3	111	3	SNAP91	6	84269834	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	7702840	84269834	86845233	286	93515											
CASP8AP2	9994	broad.mit.edu	37	chr6	90572233	90572234	+	Missense_Mutation	DNP	GG	TT	TT													tacgaaaagacttaagtactGgctgtggtgatggtgaacca							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	90572234	TT	TT	90572233	3	4	93	1	0	0	0	0	1	0	0	0	2704	1348	47	2	827	2	CASP8AP2	6	90572233	Missense_Mutation	DNP	GG	TCGA-35-4122-01A-01D-1105-08	6302399	90572233	80542834	287	93516											
C6orf167	253714	broad.mit.edu	37	chr6	97677084	97677084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatacatcaagaggaaggcCatgtgacccttccaaatgag	10	10	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97677084	A	A	97677084	3	1	93	1	0	0	0	0	1	0	0	0	2365	594	21	2	2054	2	C6orf167	6	97677084	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	7104851	97677084	73437983	288	93517											
AIM1	202	broad.mit.edu	37	chr6	106991259	106991259	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattaaatgactgatttaatGttaagctgttgggatacttc	8	4	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106991259	C	C	106991259	1	2	93	0	1	0	0	0	0	0	0	0	430	1392	48	4		4	AIM1	6	106991259	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	9314175	106991259	64123808	289	93518											
FOXO3	2309	broad.mit.edu	37	chr6	108985209	108985209	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctcatggacgacctgctGgataacatcacgctcccgcc	8	16	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108985209	A	A	108985209	2	1	93	1	0	0	0	0	0	0	0	1	6084	1335	47	4		4	FOXO3	6	108985209	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	1993950	108985209	62129858	290	93519											
REV3L	5980	broad.mit.edu	37	chr6	111697523	111697523	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgatttttctaatgtttgTatattttctacttggtactt	5	5	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111697523	C	C	111697523	3	2	93	1	0	0	0	0	1	0	0	0	13348	1638	57	5	7437	5	REV3L	6	111697523	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	2712314	111697523	59417544	291	93520											
REV3L	5980	broad.mit.edu	37	chr6	111737651	111737651	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggtaaggaaagatgccaTgtagatgaagacatgtcttc	12	5	1	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111737651	C	C	111737651	3	2	93	1	0	0	0	0	1	0	0	0	13348	1464	51	5	9352	5	REV3L	6	111737651	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	40128	111737651	59377416	292	93521											
DCBLD1	285761	broad.mit.edu	37	chr6	117824950	117824950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggctgtggacacctaGtgacttatcaggatagtggc	14	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117824950	T	T	117824950	3	4	93	1	0	0	0	0	1	0	0	0	4313	1029	36	3	139	3	DCBLD1	6	117824950	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	6087299	117824950	53290117	293	93522											
SLC35F1	222553	broad.mit.edu	37	chr6	118596768	118596768	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggagcatttttcagtGgaattcaattgtgagtaaaa	9	4	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118596768	T	T	118596768	4	4	93	1	0	0	0	0	0	1	0	0	14702	1349	47	2	802	2	SLC35F1	6	118596768	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	771818	118596768	52518299	294	93523											
C6orf170	221322	broad.mit.edu	37	chr6	121605039	121605039	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtaaaaagaacaagcagatCtatgagggataccaaacctt	9	7	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121605039	A	A	121605039	3	1	93	1	0	0	0	0	1	0	0	0	2367	913	32	3	2463	3	C6orf170	6	121605039	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3008271	121605039	49510028	295	93524											
MAP3K5	4217	broad.mit.edu	37	chr6	136904872	136904872	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccattttagtttcggttcttCagccccctgtgaataaaaat	6	10	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136904872	T	T	136904872	3	4	93	1	0	0	0	0	1	0	0	0	9345	835	29	4	920	4	MAP3K5	6	136904872	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	15299833	136904872	34210195	296	93525											
MAP3K5	4217	broad.mit.edu	37	chr6	137018361	137018361	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacatcttctcacctggAtatctctgtaggaaagtaac	6	9	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137018361	G	G	137018361	3	3	93	1	0	0	0	0	1	0	0	0	9345	333	12	5	3257	5	MAP3K5	6	137018361	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	113489	137018361	34096706	297	93526											
UTRN	7402	broad.mit.edu	37	chr6	144812236	144812236	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacgcacctggacaagtgtAtggtgaggcttttgggtgat	15	6	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144812236	G	G	144812236	3	3	93	1	0	0	0	0	1	0	0	0	17230	449	16	5	4557	5	UTRN	6	144812236	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	7793875	144812236	26302831	298	93527											
LATS1	9113	broad.mit.edu	37	chr6	149982925	149982925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttttgatcatcttcatcCgactgctgctctgagccttg	9	11	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149982925	A	A	149982925	2	1	93	1	0	0	0	0	0	0	0	1	8718	639	23	1		1	LATS1	6	149982925	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	5170689	149982925	21132142	299	93528											
LATS1	9113	broad.mit.edu	37	chr6	150001145	150001145	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaataaaacccattttaTgaacactttcaactgcacag	4	9	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150001145	C	C	150001145	3	2	93	1	0	0	0	0	1	0	0	0	8718	1464	51	5	949	5	LATS1	6	150001145	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	18220	150001145	21113922	300	93529											
SYNE1	23345	broad.mit.edu	37	chr6	152826578	152826578	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtcacattctgaatagatAcaagcactttcttcaaggcc	6	10	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152826578	G	G	152826578	1	3	93	0	1	0	0	0	0	0	0	0	15564	406	14	5		5	SYNE1	6	152826578	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	2825433	152826578	18288489	301	93530											
TIAM2	26230	broad.mit.edu	37	chr6	155571995	155571995	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcactatctaacaagagatCatctagcctgggatttccgt	7	10	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155571995	T	T	155571995	1	4	93	0	1	0	0	0	0	0	0	0	16014	841	29	4		4	TIAM2	6	155571995	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2745417	155571995	15543072	302	93531											
LPA	4018	broad.mit.edu	37	chr6	160968971	160968971	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattcccaaacatacagtcTgtagaaaaaaataaaaataa	3	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160968971	C	C	160968971	5	2	93	1	0	0	0	0	0	0	1	0	8990	1594	55	5	1000	5	LPA	6	160968971	Splice_Site	SNP	T	TCGA-35-4122-01A-01D-1105-08	5396976	160968971	10146096	303	93532											
DLL1	28514	broad.mit.edu	37	chr6	170597953	170597953	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaaaagcagtcattcctAacagccaggtcagcaacaga	9	11	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170597953	T	T	170597953	1	4	93	0	1	0	0	0	0	0	0	0	4606	377	13	5		5	DLL1	6	170597953	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	9628982	170597953	517114	304	93533											
MMD2	221938	broad.mit.edu	37	chr7	4965101	4965101	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgggtggcacagttgGccgcatgttcatactctgtg	13	10	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4965101	A	A	4965101	3	1	93	1	0	0	0	0	1	0	0	0	9737	1203	42	4	726	4	MMD2	7	4965101	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08		4965101	154173562	305	93534											
SLC29A4	222962	broad.mit.edu	37	chr7	5327649	5327649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggcaaggtgcgggtcttGccccaaagcaggctgggctg	18	11	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5327649	A	A	5327649	1	1	93	0	1	0	0	0	0	0	0	0	14651	1334	46	4		4	SLC29A4	7	5327649	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	362548	5327649	153811014	306	93535											
ACTB	60	broad.mit.edu	37	chr7	5568402	5568402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagccactggggacagcCaggccagacgggggacatgc	18	11	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5568402	A	A	5568402	1	1	93	0	1	0	0	0	0	0	0	0	193	609	21	2		2	ACTB	7	5568402	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	240753	5568402	153570261	307	93536											
OCM	654231	broad.mit.edu	37	chr7	5923426	5923426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttaattattgccggtgctGgaaacaggtgatatgcttag	13	5	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5923426	A	A	5923426	1	1	93	0	1	0	0	0	0	0	0	0	10916	1363	47	4		4	OCM	7	5923426	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	355024	5923426	153215237	308	93537											
C7orf28A	51622	broad.mit.edu	37	chr7	5963388	5963388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcccgttccatttcctgTtcttggtttggaacgcttat	9	11	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5963388	C	C	5963388	1	2	93	0	1	0	0	0	0	0	0	0	2408	1740	60	5		5	C7orf28A	7	5963388	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	39962	5963388	153175275	309	93538											
COL28A1	340267	broad.mit.edu	37	chr7	7559679	7559679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggtttaaagaaaagctGtttattcatttaccgggttt	9	6	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7559679	T	T	7559679	1	4	93	0	1	0	0	0	0	0	0	0	3718	1392	48	3		3	COL28A1	7	7559679	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1596291	7559679	151578984	310	93539											
MIOS	54468	broad.mit.edu	37	chr7	7612858	7612858	+	Frame_Shift_Del	DEL	G	-	-													tgaaggtcaggttgcaatatGggatcttagaaaatttgaga							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7612858	-	-	7612858	7	5	93	1	0	1	0	1	0	0	0	0	9682	1357	47	0	754	0	MIOS	7	7612858	Frame_Shift_Del	DEL	G	TCGA-35-4122-01A-01D-1105-08	53179	7612858	151525805	311	93540											
DGKB	1607	broad.mit.edu	37	chr7	14217622	14217622	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtttgaggctatgccatatCaaacgcctttgtcagttaca	8	9	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14217622	G	G	14217622	1	3	93	0	1	0	0	0	0	0	0	0	4506	841	29	4		4	DGKB	7	14217622	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	6604764	14217622	144921041	312	93541											
MEOX2	4223	broad.mit.edu	37	chr7	15652162	15652162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattcaccagttccttttcCcgagccgcagctccttgctg	7	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15652162	A	A	15652162	2	1	93	1	0	0	0	0	0	0	0	1	9567	610	22	2		2	MEOX2	7	15652162	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	1434540	15652162	143486501	313	93542											
TWISTNB	221830	broad.mit.edu	37	chr7	19738178	19738178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attattagtattctgcagggCtgactcttccattggagtgt	10	7	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19738178	A	A	19738178	3	1	93	1	0	0	0	0	1	0	0	0	16910	797	28	3	242	3	TWISTNB	7	19738178	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	4086016	19738178	139400485	314	93543											
ABCB5	340273	broad.mit.edu	37	chr7	20685435	20685435	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattccaaagctggggctgtGgcagaagaagtcttgtcatc	12	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20685435	T	T	20685435	1	4	93	0	1	0	0	0	0	0	0	0	44	1335	47	2		2	ABCB5	7	20685435	5'Flank	SNP	G	TCGA-35-4122-01A-01D-1105-08	947257	20685435	138453228	315	93544											
ABCB5	340273	broad.mit.edu	37	chr7	20762554	20762554	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctttttttaaaaagtctaCcttgttttgcaaggaactat	5	6	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20762554	G	G	20762554	1	3	93	0	1	0	0	0	0	0	0	0	44	522	18	4		4	ABCB5	7	20762554	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	77119	20762554	138376109	316	93545											
IGF2BP3	10643	broad.mit.edu	37	chr7	23509712	23509712	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgttctcgctgaggtttccGatatacagtttgttcattgt	10	8	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509712	T	T	23509712	2	4	93	1	0	0	0	0	0	0	0	1	7645	1048	37	3		3	IGF2BP3	7	23509712	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	2747158	23509712	135628951	317	93546											
AMPH	273	broad.mit.edu	37	chr7	38530513	38530513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaacaacataaaaatccCacgcttaaataaatgaaaag	5	7	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38530513	A	A	38530513	1	1	93	0	1	0	0	0	0	0	0	0	588	609	21	2		2	AMPH	7	38530513	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	15020801	38530513	120608150	318	93547											
VPS41	27072	broad.mit.edu	37	chr7	38829524	38829524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaaaattcttcataacaTtttattcagtatatggtatc	5	5	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38829524	A	A	38829524	1	1	93	0	1	0	0	0	0	0	0	0	17337	1508	52	5		5	VPS41	7	38829524	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	299011	38829524	120309139	319	93548											
CDK13	8621	broad.mit.edu	37	chr7	40041692	40041692	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgatgttgctaacttggaAattttttttatagatgtgac	8	3	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40041692	T	T	40041692	1	4	93	0	1	0	0	0	0	0	0	0	3159	29	1	5		5	CDK13	7	40041692	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	1212168	40041692	119096971	320	93549											
AUTS2	26053	broad.mit.edu	37	chr7	70236556	70236556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccattcctatcctcctGcagtgtcgggcatcccccct	6	18	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70236556	T	T	70236556	3	4	93	1	0	0	0	0	1	0	0	0	1230	1319	46	3	1943	3	AUTS2	7	70236556	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	30194864	70236556	88902107	321	93550											
PTCD1	26024	broad.mit.edu	37	chr7	99049973	99049973	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcttgttctcatcccctCtggctgctggtgaccagccc	8	16	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99049973	G	G	99049973	1	3	93	0	1	0	0	0	0	0	0	0	12833	928	32	4		4	PTCD1	7	99049973	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	28813417	99049973	60088690	322	93551											
TAF6	6878	broad.mit.edu	37	chr7	99705159	99705159	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtggagaccaacttgaCgatgggctgcacgctgggga	18	9	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99705159	T	T	99705159	3	4	93	1	0	0	0	0	1	0	0	0	15649	536	19	4	293	4	TAF6	7	99705159	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	655186	99705159	59433504	323	93552											
EMID2	136227	broad.mit.edu	37	chr7	101200605	101200605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaaatgtacccccaagtGttcctaaggctctacctcga	7	13	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200605	T	T	101200605	1	4	93	0	1	0	0	0	0	0	0	0	5134	1392	48	3		3	EMID2	7	101200605	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1495446	101200605	57938058	324	93553											
SLC26A5	375611	broad.mit.edu	37	chr7	103038558	103038558	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtcaagtcaaatctattCtcacttttaacattcagatt	3	8	5	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103038558	A	A	103038558	1	1	93	0	1	0	0	0	0	0	0	0	14634	928	32	3		3	SLC26A5	7	103038558	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1837953	103038558	56100105	325	93554											
RELN	5649	broad.mit.edu	37	chr7	103113393	103113393	+	Intron	DEL	G	-	-													gatagaggcagggaaggaaaGgaaaaagagcatgtaagtcc							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103113393	-	-	103113393	6	5	93	0	1	1	0	1	0	0	0	0	13328	1015	35	0		0	RELN	7	103113393	Intron	DEL	G	TCGA-35-4122-01A-01D-1105-08	74835	103113393	56025270	326	93555											
DOCK4	9732	broad.mit.edu	37	chr7	111368372	111368372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggggcctgggccgcggGccggggtcagtcctccgggc	21	14	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111368372	T	T	111368372	2	4	93	1	0	0	0	0	0	0	0	1	4729	1190	42	3		3	DOCK4	7	111368372	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	8254979	111368372	47770291	327	93556											
ZNF277	11179	broad.mit.edu	37	chr7	111846828	111846828	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgcaggaagaccgtgatggGagctgcagcacagtcggggg	18	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111846828	C	C	111846828	2	2	93	1	0	0	0	0	0	0	0	1	17938	1161	41	4		4	ZNF277	7	111846828	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	478456	111846828	47291835	328	93557											
PPP1R3A	5506	broad.mit.edu	37	chr7	113558626	113558626	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaactcgaataatacccttGatacttgtagacccaagaag	6	9	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113558626	T	T	113558626	2	4	93	1	0	0	0	0	0	0	0	1	12472	1280	45	3		3	PPP1R3A	7	113558626	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	1711798	113558626	45580037	329	93558											
KCND2	3751	broad.mit.edu	37	chr7	120373135	120373135	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggtgcgtattcaactcCgtgcaaccatggtttagcac	9	10	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120373135	T	T	120373135	1	4	93	0	1	0	0	0	0	0	0	0	8089	667	23	4		4	KCND2	7	120373135	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	6814509	120373135	38765528	330	93559											
AASS	10157	broad.mit.edu	37	chr7	121766286	121766286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactttattccacttgtaTtcatcatccttcagcatacc	2	13	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121766286	C	C	121766286	1	2	93	0	1	0	0	0	0	0	0	0	24	1508	52	5		5	AASS	7	121766286	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1393151	121766286	37372377	331	93560											
FSCN3	29999	broad.mit.edu	37	chr7	127235632	127235632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaccacatgtggaccccccGaccagccctccatgtccacg	7	19	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127235632	T	T	127235632	3	4	93	1	0	0	0	0	1	0	0	0	6129	1058	37	3	422	3	FSCN3	7	127235632	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	5469346	127235632	31903031	332	93561											
FLNC	2318	broad.mit.edu	37	chr7	128481051	128481051	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctggggggcaggaggaggGagtgctgcgggggagggcag	27	5	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128481051	T	T	128481051	1	4	93	0	1	0	0	0	0	0	0	0	5993	1189	41	3		3	FLNC	7	128481051	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1245419	128481051	30657612	333	93562											
PLXNA4	91584	broad.mit.edu	37	chr7	131815253	131815253	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttctcagctgtctaagctCatgagggttatgacttgttc	11	8	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131815253	T	T	131815253	3	4	93	1	0	0	0	0	1	0	0	0	12217	826	29	4	18	4	PLXNA4	7	131815253	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3334202	131815253	27323410	334	93563											
PTN	5764	broad.mit.edu	37	chr7	136938296	136938296	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagctccagtccgagtgccCtcccgtgtgcccagcccaca	9	19	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136938296	G	G	136938296	3	3	93	1	0	0	0	0	1	0	0	0	12874	680	24	4	314	4	PTN	7	136938296	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	5123043	136938296	22200367	335	93564											
DGKI	9162	broad.mit.edu	37	chr7	137308271	137308271	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgatagccacaatctctttActgtggaaggagaacttttg	9	8	1	2	rs112061731		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137308271	G	G	137308271	2	3	93	1	0	0	0	0	0	0	0	1	4511	388	14	5		5	DGKI	7	137308271	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	369975	137308271	21830392	336	93565											
CREB3L2	64764	broad.mit.edu	37	chr7	137567363	137567363	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcgtagatcagcaggtTtctggatctcactgaggaca	10	10	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137567363	C	C	137567363	3	2	93	1	0	0	0	0	1	0	0	0	3889	1841	64	5	288	5	CREB3L2	7	137567363	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	259092	137567363	21571300	337	93566											
CREB3L2	64764	broad.mit.edu	37	chr7	137600571	137600571	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctgtttaaacagacgaaAattgagcataccccagtgtt	7	9	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137600571	C	C	137600571	1	2	93	0	1	0	0	0	0	0	0	0	3889	29	1	5		5	CREB3L2	7	137600571	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	33208	137600571	21538092	338	93567											
AKR1D1	6718	broad.mit.edu	37	chr7	137792171	137792172	+	Silent	DNP	TC	AG	AG													tatttttaagggtgaatgttTcttctccacctttgttaaag							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	137792172	AG	AG	137792171	2	1	93	1	0	0	0	0	0	0	0	1	473	1783	62	5		5	AKR1D1	7	137792171	Silent	DNP	TC	TCGA-35-4122-01A-01D-1105-08	191600	137792171	21346492	339	93568											
NDUFB2	4708	broad.mit.edu	37	chr7	140402688	140402688	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccggtggtggtgtgcacattGagccccggtatagacagttc	14	10	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140402688	C	C	140402688	3	2	93	1	0	0	0	0	1	0	0	0	10376	1291	45	4	127	4	NDUFB2	7	140402688	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2610517	140402688	18735975	340	93569											
TAS2R39	259285	broad.mit.edu	37	chr7	142881086	142881086	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caattctttccctatccactCctccaactccactaagaaaa	1	16	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142881086	T	T	142881086	3	4	93	1	0	0	0	0	1	0	0	0	15695	855	30	4	577	4	TAS2R39	7	142881086	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2478398	142881086	16257577	341	93570											
CNTNAP2	26047	broad.mit.edu	37	chr7	147914688	147914688	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttctagcaagagtctataGattgttcttggtttgttatt	9	4	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147914688	C	C	147914688	1	2	93	0	1	0	0	0	0	0	0	0	3679	957	33	4		4	CNTNAP2	7	147914688	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	5033602	147914688	11223975	342	93571											
GIMAP5	55340	broad.mit.edu	37	chr7	150437875	150437875	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggctcatttgagaatgaTtattcttagatgtctgaatt	8	4	3	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150437875	G	G	150437875	1	3	93	0	1	0	0	0	0	0	0	0	6446	1508	52	5		5	GIMAP5	7	150437875	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2523187	150437875	8700788	343	93572											
PRKAG2	51422	broad.mit.edu	37	chr7	151265708	151265708	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacctcaaaactaacaatttCttctactgagggtaacagga	7	9	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151265708	A	A	151265708	1	1	93	0	1	0	0	0	0	0	0	0	12607	928	32	3		3	PRKAG2	7	151265708	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	827833	151265708	7872955	344	93573											
UBE3C	9690	broad.mit.edu	37	chr7	156967516	156967516	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgattaggtttgattaaaTgtgcattgccactaaaggaa	9	4	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156967516	C	C	156967516	1	2	93	0	1	0	0	0	0	0	0	0	17007	1479	51	5		5	UBE3C	7	156967516	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	5701808	156967516	2171147	345	93574											
DLC1	10395	broad.mit.edu	37	chr8	13356859	13356859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttcattttcatctttaGgggggtcaggtttccttcgt	9	8	5	0	rs149776829		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13356859	T	T	13356859	3	4	93	1	0	0	0	0	1	0	0	0	4590	1000	35	2	4017	2	DLC1	8	13356859	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08		13356859	133007163	346	93575											
SORBS3	10174	broad.mit.edu	37	chr8	22415693	22415693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgttccagcagattcacCggaaaatgccaggtaagata	10	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22415693	A	A	22415693	2	1	93	1	0	0	0	0	0	0	0	1	15043	643	23	1		1	SORBS3	8	22415693	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	9058834	22415693	123948329	347	93576											
EBF2	64641	broad.mit.edu	37	chr8	25902344	25902344	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttctctttcagagttggtCctcttcctaaagtatcttga	6	9	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25902344	T	T	25902344	3	4	93	1	0	0	0	0	1	0	0	0	4921	855	30	4	1759	4	EBF2	8	25902344	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3486651	25902344	120461678	348	93577											
KCNU1	157855	broad.mit.edu	37	chr8	36641964	36641964	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacgaaatgaaacttgggaAgacttgccaaaaatgtcctg	9	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36641964	G	G	36641964	2	3	93	1	0	0	0	0	0	0	0	1	8163	69	3	5		5	KCNU1	8	36641964	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	10739620	36641964	109722058	349	93578											
KCNU1	157855	broad.mit.edu	37	chr8	36766921	36766921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccgatggggcttcggaaCtttgtaatgcccttgagagc	13	11	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36766921	A	A	36766921	3	1	93	1	0	0	0	0	1	0	0	0	8163	564	20	3	2281	3	KCNU1	8	36766921	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	124957	36766921	109597101	350	93579											
TACC1	6867	broad.mit.edu	37	chr8	38700953	38700953	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatttcactcttcatgatgTtgtgggaagattgagagagg	13	4	3	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38700953	A	A	38700953	1	1	93	0	1	0	0	0	0	0	0	0	15620	1740	60	5		5	TACC1	8	38700953	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1934032	38700953	107663069	351	93580											
THAP1	55145	broad.mit.edu	37	chr8	42693223	42693223	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttaatttttcaagctgcCgttcttgccttctgcatcgc	6	13	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42693223	T	T	42693223	3	4	93	1	0	0	0	0	1	0	0	0	15964	652	23	4	121	4	THAP1	8	42693223	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3992270	42693223	103670799	352	93581											
HGSNAT	138050	broad.mit.edu	37	chr8	43048962	43048962	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggcaccatcaactccatCgtgatggcctttttaggagt	10	11	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43048962	A	A	43048962	2	1	93	1	0	0	0	0	0	0	0	1	7155	874	31	3		3	HGSNAT	8	43048962	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	355739	43048962	103315060	353	93582											
ATP6V1H	51606	broad.mit.edu	37	chr8	54714430	54714430	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcagctgcaaacacccGgccacgcactgcacatactg	8	16	1	0	rs139364478		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54714430	A	A	54714430	2	1	93	1	0	0	0	0	0	0	0	1	1193	1103	39	4		4	ATP6V1H	8	54714430	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	11665468	54714430	91649592	354	93583											
LYN	4067	broad.mit.edu	37	chr8	56879313	56879313	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggtggctgtgaaaacccTgaagccaggaactatgtctg	12	9	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56879313	C	C	56879313	3	2	93	1	0	0	0	0	1	0	0	0	9195	1580	55	5	860	5	LYN	8	56879313	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	2164883	56879313	89484709	355	93584											
MOS	4342	broad.mit.edu	37	chr8	57025678	57025678	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtcgtaggccaccaccgcGtacagtatgtgctgccgctc	12	14	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57025678	C	C	57025678	4	2	93	1	0	0	0	0	0	1	0	0	9806	1140	40	4	179	4	MOS	8	57025678	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	146365	57025678	89338344	356	93585											
IMPAD1	54928	broad.mit.edu	37	chr8	57878924	57878924	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcccaagctgaaaagcaaaTataatatccattaatggcac	6	9	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57878924	C	C	57878924	1	2	93	0	1	0	0	0	0	0	0	0	7795	1421	49	5		5	IMPAD1	8	57878924	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	853246	57878924	88485098	357	93586											
CA8	767	broad.mit.edu	37	chr8	61121321	61121321	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacataccctcatgaagacAgacttgttcctgtcctcttt	7	12	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61121321	G	G	61121321	1	3	93	0	1	0	0	0	0	0	0	0	2549	203	7	5		5	CA8	8	61121321	3'UTR	SNP	A	TCGA-35-4122-01A-01D-1105-08	3242397	61121321	85242701	358	93587											
NKAIN3	286183	broad.mit.edu	37	chr8	63777748	63777749	+	Intron	DNP	GG	TT	TT													atgtacttgtggagaagtatGgctggccccatgaagatgct							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	63777749	TT	TT	63777748	1	4	93	0	1	0	0	0	0	0	0	0	10532	1363	47	2		2	NKAIN3	8	63777748	Intron	DNP	GG	TCGA-35-4122-01A-01D-1105-08	2656427	63777748	82586274	359	93588											
TRPA1	8989	broad.mit.edu	37	chr8	72987658	72987658	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcttcattgaccccaccccgGacgccacctggtgcagctgc	10	18	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72987658	A	A	72987658	1	1	93	0	1	0	0	0	0	0	0	0	16702	1189	41	4		4	TRPA1	8	72987658	5'UTR	SNP	G	TCGA-35-4122-01A-01D-1105-08	9209910	72987658	73376364	360	93589											
GDAP1	54332	broad.mit.edu	37	chr8	75275351	75275351	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attattcatgggaacattctTaggtctcaccaaaaacgttc	6	9	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75275351	C	C	75275351	1	2	93	0	1	0	0	0	0	0	0	0	6370	1769	61	5		5	GDAP1	8	75275351	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2287693	75275351	71088671	361	93590											
CRISPLD1	83690	broad.mit.edu	37	chr8	75924633	75924633	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaagtgtccaaatgctAcatgtgcacattttgctttt	8	8	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75924633	G	G	75924633	1	3	93	0	1	0	0	0	0	0	0	0	3914	406	14	5		5	CRISPLD1	8	75924633	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	649282	75924633	70439389	362	93591											
ZFHX4	79776	broad.mit.edu	37	chr8	77764222	77764222	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctgcacatcacccaccaCagtcaccagcacaaattcag	4	17	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77764222	G	G	77764222	3	3	93	1	0	0	0	0	1	0	0	0	17761	479	17	4	5099	4	ZFHX4	8	77764222	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1839589	77764222	68599800	363	93592											
ZFHX4	79776	broad.mit.edu	37	chr8	77766190	77766190	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaagatgatgatgcccaaGatgaaagccaaacagaagac	10	7	0	8			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77766190	A	A	77766190	3	1	93	1	0	0	0	0	1	0	0	0	17761	942	33	4	7067	4	ZFHX4	8	77766190	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1968	77766190	68597832	364	93593											
FABP12	646486	broad.mit.edu	37	chr8	82439309	82439309	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtggtttctttgccatcCcagtcctgaacttgaatcag	9	10	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82439309	A	A	82439309	3	1	93	1	0	0	0	0	1	0	0	0	5402	624	22	2	134	2	FABP12	8	82439309	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	4673119	82439309	63924713	365	93594											
PSKH2	85481	broad.mit.edu	37	chr8	87060752	87060752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttgctccacatatgcCtggatttgtgagaataatgt	8	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87060752	A	A	87060752	3	1	93	1	0	0	0	0	1	0	0	0	12771	681	24	2	62	2	PSKH2	8	87060752	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	4621443	87060752	59303270	366	93595											
RUNX1T1	862	broad.mit.edu	37	chr8	93026810	93026810	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtttccatttgcttaccacTagtcccagaacgagggtgcg	11	11	0	1	rs34991280	byFrequency;by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93026810	A	A	93026810	2	1	93	1	0	0	0	0	0	0	0	1	13858	1509	53	5		5	RUNX1T1	8	93026810	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	5966058	93026810	53337212	367	93596											
POP1	10940	broad.mit.edu	37	chr8	99162872	99162872	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaaaagtacaaaaggtaaGaaactggcttctctaatttg	8	5	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99162872	C	C	99162872	1	2	93	0	1	0	0	0	0	0	0	0	12346	957	33	4		4	POP1	8	99162872	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	6136062	99162872	47201150	368	93597											
VPS13B	157680	broad.mit.edu	37	chr8	100115121	100115121	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagttcaataacactttaAgaaataattatttactgaga	4	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100115121	C	C	100115121	1	2	93	0	1	0	0	0	0	0	0	0	17317	87	3	5		5	VPS13B	8	100115121	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	952249	100115121	46248901	369	93598											
CSMD3	114788	broad.mit.edu	37	chr8	113253965	113253965	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaccacttagctttgggctGggtgttcccagtgcaggtct	12	10	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113253965	A	A	113253965	2	1	93	1	0	0	0	0	0	0	0	1	3980	1335	47	4		4	CSMD3	8	113253965	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	13138844	113253965	33110057	370	93599											
SCRIB	23513	broad.mit.edu	37	chr8	144890968	144890968	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggccattgtgccagcccccGggagccacagggccctcccc	13	19	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144890968	C	C	144890968	2	2	93	1	0	0	0	0	0	0	0	1	14050	1103	39	4		4	SCRIB	8	144890968	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	31637003	144890968	1473054	371	93600											
RECQL4	9401	broad.mit.edu	37	chr8	145742036	145742036	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgtggaggctcatcaCtgactttttctgcaaaggag	13	8	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145742036	T	T	145742036	3	4	93	1	0	0	0	0	1	0	0	0	13310	565	20	4	3228	4	RECQL4	8	145742036	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	851068	145742036	621986	372	93601											
DOCK8	81704	broad.mit.edu	37	chr9	340074	340074	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttgttcttattttcatgAaagaaacacagtgcaacaat	6	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	340074	T	T	340074	1	4	93	0	1	0	0	0	0	0	0	0	4733	261	9	5		5	DOCK8	9	340074	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08		340074	140873357	373	93602											
VLDLR	7436	broad.mit.edu	37	chr9	2635500	2635500	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattccagtgcacaaatggtCgctgtattacgctgttgtgg	11	8	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2635500	T	T	2635500	3	4	93	1	0	0	0	0	1	0	0	0	17301	884	31	4	136	4	VLDLR	9	2635500	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2295426	2635500	138577931	374	93603											
TTC39B	158219	broad.mit.edu	37	chr9	15177755	15177755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctgtaagttcttgaggCaacatcctttaagtaacttc	8	10	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15177755	A	A	15177755	3	1	93	1	0	0	0	0	1	0	0	0	16834	710	25	3	279	3	TTC39B	9	15177755	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	12542255	15177755	126035676	375	93604											
C9orf93	203238	broad.mit.edu	37	chr9	15578885	15578885	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattgccaagctacggtcCgaggttgaaaagggagaagc	14	8	0	3	rs34754760	byFrequency;by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15578885	A	A	15578885	2	1	93	1	0	0	0	0	0	0	0	1	2532	639	23	1		1	C9orf93	9	15578885	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	401130	15578885	125634546	376	93605											
FAM154A	158297	broad.mit.edu	37	chr9	18941806	18941806	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcatactggtggaccttcaCtggtgccactttgtgaggcc	12	11	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18941806	G	G	18941806	3	3	93	1	0	0	0	0	1	0	0	0	5509	565	20	4	1182	4	FAM154A	9	18941806	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3362921	18941806	122271625	377	93606											
RPS6	6194	broad.mit.edu	37	chr9	19380082	19380082	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcctacttgagacccttctCcacctaaagccaggatcctg	6	16	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19380082	G	G	19380082	1	3	93	0	1	0	0	0	0	0	0	0	13760	870	30	4		4	RPS6	9	19380082	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	438276	19380082	121833349	378	93607											
TAF1L	138474	broad.mit.edu	37	chr9	32630923	32630923	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctggaacaaacttcttaTtaactgggtgatgaaatggc	9	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32630923	C	C	32630923	3	2	93	1	0	0	0	0	1	0	0	0	15642	1493	52	5	829	5	TAF1L	9	32630923	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	13250841	32630923	108582508	379	93608											
KIF24	347240	broad.mit.edu	37	chr9	34255868	34255868	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtgacattttcactgttgCagggcaacttgatggggtct	12	7	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34255868	G	G	34255868	3	3	93	1	0	0	0	0	1	0	0	0	8362	710	25	4	381	4	KIF24	9	34255868	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1624945	34255868	106957563	380	93609											
TLN1	7094	broad.mit.edu	37	chr9	35698007	35698007	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcaacatgactgccctcctGacagcgtccctcagcatctg	9	16	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35698007	T	T	35698007	1	4	93	0	1	0	0	0	0	0	0	0	16070	1305	45	3		3	TLN1	9	35698007	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1442139	35698007	105515424	381	93610											
RGP1	9827	broad.mit.edu	37	chr9	35752769	35752769	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacctgagcaagtacctgtAgacaccttcagctgggacct	11	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35752769	G	G	35752769	2	3	93	1	0	0	0	0	0	0	0	1	13392	407	15	5		5	RGP1	9	35752769	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	54762	35752769	105460662	382	93611											
ANKRD20A3	441425	broad.mit.edu	37	chr9	67965185	67965186	+	Intron	INS	-	T	T													taggtaagcctatagcagtgINStttttttttttgtttgtttg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67965186	T	T	67965185	6	5	93	0	1	1	1	0	0	0	0	0	649	1392	48	0		0	ANKRD20A3	9	67965185	Intron	INS	-	TCGA-35-4122-01A-01D-1105-08	32212416	67965185	73248246	383	93612											
TRPM3	80036	broad.mit.edu	37	chr9	73168009	73168009	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaaacccactgttttctGaagcatcgactccccttcac	5	14	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73168009	T	T	73168009	1	4	93	0	1	0	0	0	0	0	0	0	16712	1305	45	3		3	TRPM3	9	73168009	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	5202824	73168009	68045422	384	93613											
TRPM3	80036	broad.mit.edu	37	chr9	73442648	73442648	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccggtagaaataatgGttcatgtttaaaacttgctc	9	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73442648	C	C	73442648	1	2	93	0	1	0	0	0	0	0	0	0	16712	1276	44	4		4	TRPM3	9	73442648	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	274639	73442648	67770783	385	93614											
PRUNE2	158471	broad.mit.edu	37	chr9	79320297	79320297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgaaactgtggtcaaagGcagcttcgcttatatccaga	10	10	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79320297	A	A	79320297	3	1	93	1	0	0	0	0	1	0	0	0	12747	1203	42	4	2421	4	PRUNE2	9	79320297	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	5877649	79320297	61893134	386	93615											
FOXB2	442425	broad.mit.edu	37	chr9	79634737	79634737	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccgcgagcacacacagcGctggcagaacagcctgcgcc	11	17	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79634737	A	A	79634737	3	1	93	1	0	0	0	0	1	0	0	0	6051	1087	38	4	169	4	FOXB2	9	79634737	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	314440	79634737	61578694	387	93616											
FLJ46321	389763	broad.mit.edu	37	chr9	84608828	84608828	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcagtagaaagacctttcCtgtcaccaatgctcttcaat	8	11	3	2	rs139613817	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84608828	T	T	84608828	3	4	93	1	0	0	0	0	1	0	0	0	5990	681	24	4	3457	4	FLJ46321	9	84608828	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	4974091	84608828	56604603	388	93617											
COL15A1	1306	broad.mit.edu	37	chr9	101788262	101788262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaggtacggggaacacGggagggtcccaccacatggg	18	9	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101788262	T	T	101788262	1	4	93	0	1	0	0	0	0	0	0	0	3704	1131	39	1		1	COL15A1	9	101788262	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	17179434	101788262	39425169	389	93618											
TNC	3371	broad.mit.edu	37	chr9	117849201	117849201	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctgcaaagccatcgtggCacacacacaagccatctaca	7	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117849201	T	T	117849201	3	4	93	1	0	0	0	0	1	0	0	0	16393	710	25	4	5900	4	TNC	9	117849201	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	16060939	117849201	23364230	390	93619											
STOM	2040	broad.mit.edu	37	chr9	124116915	124116915	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttgtaaaatgcgacccaAtctaaagatgatggctcttt	7	9	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124116915	G	G	124116915	2	3	93	1	0	0	0	0	0	0	0	1	15430	98	4	5		5	STOM	9	124116915	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	6267714	124116915	17096516	391	93620											
RBM18	92400	broad.mit.edu	37	chr9	125004274	125004274	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactctgcatcaggattttcCgccatcattttcagttttgc	6	11	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125004274	G	G	125004274	2	3	93	1	0	0	0	0	0	0	0	1	13228	639	23	4		4	RBM18	9	125004274	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	887359	125004274	16209157	392	93621											
DENND1A	57706	broad.mit.edu	37	chr9	126641232	126641232	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcaaacatgcaaagtacctGaaagagtgccacctgtcctg	8	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126641232	A	A	126641232	3	1	93	1	0	0	0	0	1	0	0	0	4466	1294	45	4	3134	4	DENND1A	9	126641232	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1636958	126641232	14572199	393	93622											
PBX3	5090	broad.mit.edu	37	chr9	128697856	128697856	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagccaaagaggagctGgccaagaaatgcagcatcac	12	9	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128697856	C	C	128697856	2	2	93	1	0	0	0	0	0	0	0	1	11588	1335	47	4		4	PBX3	9	128697856	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	2056624	128697856	12515575	394	93623											
SH2D3C	10044	broad.mit.edu	37	chr9	130507147	130507147	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgccacgcacgggaggcTggagctggcagtagtggcca	18	11	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130507147	G	G	130507147	3	3	93	1	0	0	0	0	1	0	0	0	14347	1580	55	5	1110	5	SH2D3C	9	130507147	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1809291	130507147	10706284	395	93624											
SH2D3C	10044	broad.mit.edu	37	chr9	130536144	130536144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcagaggttgcagtgaaCcgggatcacaccactgcact	13	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130536144	A	A	130536144	1	1	93	0	1	0	0	0	0	0	0	0	14347	522	18	3		3	SH2D3C	9	130536144	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	28997	130536144	10677287	396	93625											
POMT1	10585	broad.mit.edu	37	chr9	134382666	134382666	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattttagagtctgtgaacAtgacggcgctatgtgaaagc	12	7	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134382666	G	G	134382666	1	3	93	0	1	0	0	0	0	0	0	0	12340	232	8	5		5	POMT1	9	134382666	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3846522	134382666	6830765	397	93626											
BRD3	8019	broad.mit.edu	37	chr9	136899808	136899808	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagaggggtggcacagcGgccgccagcggtacctttcc	14	13	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136899808	A	A	136899808	1	1	93	0	1	0	0	0	0	0	0	0	1512	1131	39	4		4	BRD3	9	136899808	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2517142	136899808	4313623	398	93627											
FCN2	2220	broad.mit.edu	37	chr9	137774413	137774413	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggctctgacaagctcaccAttctccgaggctgtccgggg	13	13	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137774413	G	G	137774413	3	3	93	1	0	0	0	0	1	0	0	0	5849	217	8	5	148	5	FCN2	9	137774413	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	874605	137774413	3439018	399	93628											
ENTPD2	954	broad.mit.edu	37	chr9	139945864	139945864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggccttctccccaggtGgctgtgagcctgctgtaggg	15	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139945864	T	T	139945864	1	4	93	0	1	0	0	0	0	0	0	0	5181	1363	47	2		2	ENTPD2	9	139945864	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2171451	139945864	1267567	400	93629											
AKR1C2	1646	broad.mit.edu	37	chr10	5038112	5038112	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaagttacattaatatTaaaatcaccaaagtaaaaga	3	6	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5038112	G	G	5038112	1	3	93	0	1	0	0	0	0	0	0	0	470	1769	61	5		5	AKR1C2	10	5038112	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08		5038112	130496635	401	93630											
ITIH2	3698	broad.mit.edu	37	chr10	7786869	7786869	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcccgtcaatgttgactttCtgggaatctacataccccct	6	13	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7786869	G	G	7786869	3	3	93	1	0	0	0	0	1	0	0	0	7974	912	32	4	2598	4	ITIH2	10	7786869	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2748757	7786869	127747878	402	93631											
TAF3	83860	broad.mit.edu	37	chr10	8051319	8051319	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctgccgcccgcgcggttAgcatggagacgttttcagat	12	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8051319	T	T	8051319	1	4	93	0	1	0	0	0	0	0	0	0	15644	435	15	5		5	TAF3	10	8051319	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	264450	8051319	127483428	403	93632											
USP6NL	9712	broad.mit.edu	37	chr10	11531052	11531052	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttggttttgttttaatctActtttttccctaccttgatt	4	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11531052	G	G	11531052	1	3	93	0	1	0	0	0	0	0	0	0	17214	406	14	5		5	USP6NL	10	11531052	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3479733	11531052	124003695	404	93633											
C1QL3	389941	broad.mit.edu	37	chr10	16556392	16556392	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatacagatgtgagtcagGtagcatttgatttccccaca	10	8	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16556392	T	T	16556392	1	4	93	0	1	0	0	0	0	0	0	0	1980	1276	44	3		3	C1QL3	10	16556392	3'UTR	SNP	G	TCGA-35-4122-01A-01D-1105-08	5025340	16556392	118978355	405	93634											
CUBN	8029	broad.mit.edu	37	chr10	16989184	16989184	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattagcaccagaacttcttTcctacagattcattagcact	4	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16989184	C	C	16989184	1	2	93	0	1	0	0	0	0	0	0	0	4084	1798	62	5		5	CUBN	10	16989184	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	432792	16989184	118545563	406	93635											
CUBN	8029	broad.mit.edu	37	chr10	17061814	17061814	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaactgcaaatacaactgaGatcagcacctggcttaccgt	8	12	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17061814	C	C	17061814	1	2	93	0	1	0	0	0	0	0	0	0	4084	957	33	4		4	CUBN	10	17061814	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	72630	17061814	118472933	407	93636											
CUBN	8029	broad.mit.edu	37	chr10	17089512	17089512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagttctcactgtgatcCgataaatgcattcccagttg	9	11	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17089512	A	A	17089512	3	1	93	1	0	0	0	0	1	0	0	0	4084	652	23	1	7821	1	CUBN	10	17089512	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	27698	17089512	118445235	408	93637											
ST8SIA6	338596	broad.mit.edu	37	chr10	17373541	17373541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagcatcacagcaggaagCaagtttggctctgcaaagga	11	9	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17373541	A	A	17373541	3	1	93	1	0	0	0	0	1	0	0	0	15354	710	25	3	824	3	ST8SIA6	10	17373541	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	284029	17373541	118161206	409	93638											
STAM	8027	broad.mit.edu	37	chr10	17737234	17737234	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaattattacagttcttgAtgacaggtaatgttaatatt	7	3	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17737234	G	G	17737234	3	3	93	1	0	0	0	0	1	0	0	0	15366	333	12	5	748	5	STAM	10	17737234	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	363693	17737234	117797513	410	93639											
STAM	8027	broad.mit.edu	37	chr10	17737257	17737257	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaggtaatgttaatattacAtttaaaatttgtatgaaagt	6	2	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17737257	T	T	17737257	1	4	93	0	1	0	0	0	0	0	0	0	15366	232	8	5		5	STAM	10	17737257	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	23	17737257	117797490	411	93640											
CACNB2	783	broad.mit.edu	37	chr10	18823253	18823253	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctattgtaatagcctttaTgatgtatagagaatttgagg	11	3	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18823253	A	A	18823253	1	1	93	0	1	0	0	0	0	0	0	0	2579	1479	51	5		5	CACNB2	10	18823253	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1085996	18823253	116711494	412	93641											
PLXDC2	84898	broad.mit.edu	37	chr10	20335798	20335798	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attattatctattattgcagGaggatacagaccacaattac	6	7	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20335798	T	T	20335798	4	4	93	1	0	0	0	0	0	1	0	0	12213	1188	41	3	335	3	PLXDC2	10	20335798	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1512545	20335798	115198949	413	93642											
ARMC3	219681	broad.mit.edu	37	chr10	23257169	23257169	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgactttatttcctcttgTagtcaaatttgggaagtgta	8	6	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23257169	C	C	23257169	1	2	93	0	1	0	0	0	0	0	0	0	956	1653	57	5		5	ARMC3	10	23257169	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2921371	23257169	112277578	414	93643											
MYO3A	53904	broad.mit.edu	37	chr10	26377216	26377216	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcctgcactattataaatGacaattctagcagatttgga	7	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26377216	T	T	26377216	3	4	93	1	0	0	0	0	1	0	0	0	10170	1290	45	3	1494	3	MYO3A	10	26377216	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	3120047	26377216	109157531	415	93644											
GAD2	2572	broad.mit.edu	37	chr10	26562572	26562572	+	Frame_Shift_Del	DEL	G	-	-													gattttttttcaggcagcttGgggtgggggattactgatgt							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26562572	-	-	26562572	7	5	93	1	0	1	0	1	0	0	0	0	6240	1357	47	0	1142	0	GAD2	10	26562572	Frame_Shift_Del	DEL	G	TCGA-35-4122-01A-01D-1105-08	185356	26562572	108972175	416	93645											
SVIL	6840	broad.mit.edu	37	chr10	29776234	29776234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacatgtcttcttcctgaaCacgaggcagacagtcaccgt	9	13	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29776234	A	A	29776234	1	1	93	0	1	0	0	0	0	0	0	0	15539	493	17	3		3	SVIL	10	29776234	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	3213662	29776234	105758513	417	93646											
MTPAP	55149	broad.mit.edu	37	chr10	30611550	30611550	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacttgtcaaggcaatccttCaaaaaataaaaataagaaaa	4	6	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30611550	T	T	30611550	1	4	93	0	1	0	0	0	0	0	0	0	10050	841	29	4		4	MTPAP	10	30611550	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	835316	30611550	104923197	418	93647											
ANKRD30A	91074	broad.mit.edu	37	chr10	37442662	37442662	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgaggagggatatcctcTagtagctgaagaaaattacc	11	6	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37442662	C	C	37442662	1	2	93	0	1	0	0	0	0	0	0	0	658	1537	53	5		5	ANKRD30A	10	37442662	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	6831112	37442662	98092085	419	93648											
PRKG1	5592	broad.mit.edu	37	chr10	53227490	53227491	+	Missense_Mutation	DNP	GG	TT	TT													tcctcctttttagatggtaaGgttgaagttacaaaagaagg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	53227491	TT	TT	53227490	3	4	93	1	0	0	0	0	1	0	0	0	12628	991	35	2	766	2	PRKG1	10	53227490	Missense_Mutation	DNP	GG	TCGA-35-4122-01A-01D-1105-08	15784828	53227490	82307257	420	93649											
PRKG1	5592	broad.mit.edu	37	chr10	53667197	53667197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattttaattagattcatGgtcatttttattacttatga	5	3	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53667197	T	T	53667197	1	4	93	0	1	0	0	0	0	0	0	0	12628	1363	47	2		2	PRKG1	10	53667197	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	439707	53667197	81867550	421	93650											
MBL2	4153	broad.mit.edu	37	chr10	54527775	54527775	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttagtgatcatttttagTgattgcccacaaaaggaaca	8	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54527775	C	C	54527775	1	2	93	0	1	0	0	0	0	0	0	0	9443	1711	59	5		5	MBL2	10	54527775	3'UTR	SNP	T	TCGA-35-4122-01A-01D-1105-08	860578	54527775	81006972	422	93651											
ANK3	288	broad.mit.edu	37	chr10	61832818	61832818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgcctttttctctggggaCtgcagttcatcatttagctt	9	10	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61832818	A	A	61832818	3	1	93	1	0	0	0	0	1	0	0	0	622	564	20	3	5653	3	ANK3	10	61832818	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	7305043	61832818	73701929	423	93652											
TET1	80312	broad.mit.edu	37	chr10	70411522	70411522	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttctgaattgagggggaaCaaaaagtataaaagtagctt	12	3	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70411522	T	T	70411522	1	4	93	0	1	0	0	0	0	0	0	0	15891	493	17	4		4	TET1	10	70411522	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	8578704	70411522	65123225	424	93653											
VPS26A	9559	broad.mit.edu	37	chr10	70931060	70931060	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaaagaaaagcaaaaaactCctgtaacccttgagattaag	6	7	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70931060	A	A	70931060	1	1	93	0	1	0	0	0	0	0	0	0	17324	870	30	3		3	VPS26A	10	70931060	3'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	519538	70931060	64603687	425	93654											
SGPL1	8879	broad.mit.edu	37	chr10	72633154	72633154	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attggtgttgtatagtgacaAgaagtacaggaactatcagt	11	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72633154	G	G	72633154	3	3	93	1	0	0	0	0	1	0	0	0	14331	72	3	5	1148	5	SGPL1	10	72633154	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	1702094	72633154	62901593	426	93655											
CDH23	64072	broad.mit.edu	37	chr10	73270112	73270112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacagtggcatcttcctGcctgaatggtattcctcttc	7	14	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73270112	T	T	73270112	1	4	93	0	1	0	0	0	0	0	0	0	3138	1334	46	3		3	CDH23	10	73270112	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	636958	73270112	62264635	427	93656											
ZMIZ1	57178	broad.mit.edu	37	chr10	81036851	81036851	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaccagcatggatagcAcccagtctggggagagttgg	14	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81036851	C	C	81036851	1	2	93	0	1	0	0	0	0	0	0	0	17822	174	6	5		5	ZMIZ1	10	81036851	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	7766739	81036851	54497896	428	93657											
ZMIZ1	57178	broad.mit.edu	37	chr10	81065187	81065187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtgcctccagtagtaaCcagcagcaggggtgggaccc	13	12	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81065187	A	A	81065187	1	1	93	0	1	0	0	0	0	0	0	0	17822	522	18	3		3	ZMIZ1	10	81065187	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	28336	81065187	54469560	429	93658											
SFTPA1	653509	broad.mit.edu	37	chr10	81372234	81372234	+	Intron	DEL	C	-	-													tggaaacatgggcacagcgaCcctgaagtcagttacacggg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81372234	-	-	81372234	6	5	93	0	1	1	0	1	0	0	0	0	14302	522	18	0		0	SFTPA1	10	81372234	Intron	DEL	C	TCGA-35-4122-01A-01D-1105-08	307047	81372234	54162513	430	93659											
SFTPD	6441	broad.mit.edu	37	chr10	81701312	81701313	+	Intron	INS	-	T	T													tgagctatgtactcattttaINSttttttttgtttttagcatt							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81701313	T	T	81701312	6	5	93	0	1	1	1	0	0	0	0	0	14306	464	16	0		0	SFTPD	10	81701312	Intron	INS	-	TCGA-35-4122-01A-01D-1105-08	329078	81701312	53833435	431	93660											
GRID1	2894	broad.mit.edu	37	chr10	87898668	87898668	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcagctcctctgtcttcaTcgtggtgaagaggctggtga	12	9	4	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87898668	A	A	87898668	3	1	93	1	0	0	0	0	1	0	0	0	6837	1435	50	5	2447	5	GRID1	10	87898668	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	6197356	87898668	47636079	432	93661											
MYOF	26509	broad.mit.edu	37	chr10	95097717	95097717	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttagtgatgtcctggattTccaatcgatgcaggaaaatg	10	7	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95097717	C	C	95097717	1	2	93	0	1	0	0	0	0	0	0	0	10183	1798	62	5		5	MYOF	10	95097717	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	7199049	95097717	40437030	433	93662											
CYP2C18	1562	broad.mit.edu	37	chr10	96443609	96443609	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggctctggtgctctgtctCtcctgtttgtttctcctttc	9	12	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96443609	A	A	96443609	2	1	93	1	0	0	0	0	0	0	0	1	4198	900	32	3		3	CYP2C18	10	96443609	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	1345892	96443609	39091138	434	93663											
CYP2C19	1557	broad.mit.edu	37	chr10	96541656	96541656	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttaaaaaccttgcttttatgGaaagtgatattttggagaaa	8	3	0	2	rs72558185		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96541656	A	A	96541656	3	1	93	1	0	0	0	0	1	0	0	0	4199	1175	41	4	739	4	CYP2C19	10	96541656	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	98047	96541656	38993091	435	93664											
ALDH18A1	5832	broad.mit.edu	37	chr10	97370991	97370991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaggcagacactgtatgCgggaagcatctggacactga	13	9	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97370991	A	A	97370991	1	1	93	0	1	0	0	0	0	0	0	0	489	783	27	3		3	ALDH18A1	10	97370991	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	829335	97370991	38163756	436	93665											
BLNK	29760	broad.mit.edu	37	chr10	97969624	97969624	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaacggggatggtgcagctGgtggaggtgacttggtttcc	18	7	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97969624	C	C	97969624	3	2	93	1	0	0	0	0	1	0	0	0	1453	1348	47	4	690	4	BLNK	10	97969624	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	598633	97969624	37565123	437	93666											
TLL2	7093	broad.mit.edu	37	chr10	98180945	98180945	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaatcagtcaaataacaGggcttgtagtggttcttgtt	10	8	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98180945	A	A	98180945	1	1	93	0	1	0	0	0	0	0	0	0	16069	1015	35	4		4	TLL2	10	98180945	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	211321	98180945	37353802	438	93667											
HPS1	3257	broad.mit.edu	37	chr10	100203101	100203101	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaaacattcagtgagcCccttctgcacaccaggcatc	7	15	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100203101	T	T	100203101	1	4	93	0	1	0	0	0	0	0	0	0	7406	638	22	4		4	HPS1	10	100203101	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2022156	100203101	35331646	439	93668											
ENTPD7	57089	broad.mit.edu	37	chr10	101445742	101445742	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttagaattattctatatatCggattttaatttttctgcca	4	5	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101445742	T	T	101445742	1	4	93	0	1	0	0	0	0	0	0	0	5186	899	31	4		4	ENTPD7	10	101445742	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1242641	101445742	34089005	440	93669											
DNMBP	23268	broad.mit.edu	37	chr10	101716274	101716274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaaagaagtttccgggatCctggcaaggctgccttcctg	11	12	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101716274	A	A	101716274	3	1	93	1	0	0	0	0	1	0	0	0	4714	854	30	3	3832	3	DNMBP	10	101716274	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	270532	101716274	33818473	441	93670											
PPRC1	23082	broad.mit.edu	37	chr10	103908224	103908224	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcatcctcatcatccagttCtcgaagccgctcacgatccc	5	18	5	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103908224	T	T	103908224	3	4	93	1	0	0	0	0	1	0	0	0	12511	913	32	4	4534	4	PPRC1	10	103908224	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2191950	103908224	31626523	442	93671											
COL17A1	1308	broad.mit.edu	37	chr10	105811939	105811939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccacagaacctgggacaCcaggtgggccatgaggacct	13	13	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105811939	A	A	105811939	3	1	93	1	0	0	0	0	1	0	0	0	3706	507	18	3	2649	3	COL17A1	10	105811939	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1903715	105811939	29722808	443	93672											
NRAP	4892	broad.mit.edu	37	chr10	115356706	115356706	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtcatagaaagatttacaCacccatctgtccagatcatc	6	11	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115356706	G	G	115356706	1	3	93	0	1	0	0	0	0	0	0	0	10733	493	17	4		4	NRAP	10	115356706	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	9544767	115356706	20178041	444	93673											
GFRA1	2674	broad.mit.edu	37	chr10	117849209	117849209	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtgtttcacccccccaCcaggaagggagccccagcaa	10	18	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117849209	G	G	117849209	1	3	93	0	1	0	0	0	0	0	0	0	6411	522	18	4		4	GFRA1	10	117849209	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2492503	117849209	17685538	445	93674											
C10orf96	374355	broad.mit.edu	37	chr10	118084607	118084607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttgatgcgagaaggtcgGggtatttctgtcctttgcat	13	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118084607	T	T	118084607	1	4	93	0	1	0	0	0	0	0	0	0	1638	1247	43	2		2	C10orf96	10	118084607	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	235398	118084607	17450140	446	93675											
GRK5	2869	broad.mit.edu	37	chr10	121182855	121182855	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagctctccacctgaccatAcagggcactgaggcaggtct	11	14	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121182855	G	G	121182855	1	3	93	0	1	0	0	0	0	0	0	0	6858	406	14	5		5	GRK5	10	121182855	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3098248	121182855	14351892	447	93676											
FGFR2	2263	broad.mit.edu	37	chr10	123310986	123310986	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgctcctgttttggaaaAcagtattagaatgtatactg	10	5	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123310986	G	G	123310986	1	3	93	0	1	0	0	0	0	0	0	0	5923	58	2	5		5	FGFR2	10	123310986	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	2128131	123310986	12223761	448	93677											
DMBT1	1755	broad.mit.edu	37	chr10	124378843	124378844	+	Missense_Mutation	DNP	GC	TT	TT													gctgctcagtcccagtcaacGcccaggccaggtgagtcccc							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	124378844	TT	TT	124378843	3	4	93	1	0	0	0	0	1	0	0	0	4617	1074	38	3	5002	3	DMBT1	10	124378843	Missense_Mutation	DNP	GC	TCGA-35-4122-01A-01D-1105-08	1067857	124378843	11155904	449	93678											
METTL10	399818	broad.mit.edu	37	chr10	126477687	126477687	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggaatcttgtgtttctgCatccaccttattagtcgatt	8	8	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126477687	T	T	126477687	3	4	93	1	0	0	0	0	1	0	0	0	9587	710	25	4	679	4	METTL10	10	126477687	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2098844	126477687	9057060	450	93679											
NPS	594857	broad.mit.edu	37	chr10	129350835	129350835	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttggagaagatgtttgtgAaaaggtcctttcgcaatgga	12	4	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129350835	T	T	129350835	4	4	93	1	0	0	0	0	0	1	0	0	10694	247	9	5	212	5	NPS	10	129350835	Nonsense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	2873148	129350835	6183912	451	93680											
KNDC1	85442	broad.mit.edu	37	chr10	135020282	135020282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggaaaagaggaacaaaGgtaaggcccctgtgggcaca	14	7	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135020282	T	T	135020282	3	4	93	1	0	0	0	0	1	0	0	0	8497	1014	35	2	3551	2	KNDC1	10	135020282	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	5669447	135020282	514465	452	93681											
KNDC1	85442	broad.mit.edu	37	chr10	135020832	135020832	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggccggcacgccgctgggGctcatggcctacctgtactc	13	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135020832	A	A	135020832	2	1	93	1	0	0	0	0	0	0	0	1	8497	1190	42	4		4	KNDC1	10	135020832	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	550	135020832	513915	453	93682											
KNDC1	85442	broad.mit.edu	37	chr10	135024344	135024344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctggcgacccaaggggGtgaggggccagggaagcctg	19	11	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135024344	T	T	135024344	1	4	93	0	1	0	0	0	0	0	0	0	8497	1276	44	3		3	KNDC1	10	135024344	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	3512	135024344	510403	454	93683											
MUC5B	727897	broad.mit.edu	37	chr11	1247870	1247870	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacccggcgcacaatgggcgGgtgtgcagcacctggggtga	17	11	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1247870	A	A	1247870	2	1	93	1	0	0	0	0	0	0	0	1	10073	1219	43	4		4	MUC5B	11	1247870	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08		1247870	133758646	455	93684											
BRSK2	9024	broad.mit.edu	37	chr11	1459521	1459521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagcgtgatgttctctgGcctctcccatgcaggtggag	14	10	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1459521	T	T	1459521	1	4	93	0	1	0	0	0	0	0	0	0	1533	1218	42	3		3	BRSK2	11	1459521	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	211651	1459521	133546995	456	93685											
MMP26	56547	broad.mit.edu	37	chr11	5012419	5012419	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttctttttaccctagataAgagagtaggaagattttggg	10	5	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5012419	T	T	5012419	1	4	93	0	1	0	0	0	0	0	0	0	9757	87	3	5		5	MMP26	11	5012419	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3552898	5012419	129994097	457	93686											
HBE1	3046	broad.mit.edu	37	chr11	5290652	5290652	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgtcaaaatataaagcCaaaaaatcacatcaccagca	3	9	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5290652	T	T	5290652	1	4	93	0	1	0	0	0	0	0	0	0	7046	609	21	4		4	HBE1	11	5290652	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	278233	5290652	129715864	458	93687											
OR51B5	282763	broad.mit.edu	37	chr11	5363926	5363926	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagggaacagaaaataggCatagctcataatgaggtgaa	13	4	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5363926	G	G	5363926	3	3	93	1	0	0	0	0	1	0	0	0	11185	710	25	4	113	4	OR51B5	11	5363926	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	73274	5363926	129642590	459	93688											
OR52B6	340980	broad.mit.edu	37	chr11	5602711	5602711	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacattttgtgagcacatggGcattgcccatctgtcctgtt	9	11	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5602711	A	A	5602711	3	1	93	1	0	0	0	0	1	0	0	0	11207	1203	42	4	607	4	OR52B6	11	5602711	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	238785	5602711	129403805	460	93689											
SBF2	81846	broad.mit.edu	37	chr11	9983593	9983593	+	Frame_Shift_Del	DEL	C	-	-													ctggacatgcaaacccaattCatcagtgagacactgtcttg					rs138410095		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9983593	-	-	9983593	7	5	93	1	0	1	0	1	0	0	0	0	13971	835	29	0	3878	0	SBF2	11	9983593	Frame_Shift_Del	DEL	C	TCGA-35-4122-01A-01D-1105-08	4380882	9983593	125022923	461	93690											
PARVA	55742	broad.mit.edu	37	chr11	12530097	12530097	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaaagcatagttttctcttCtcctcccaacccctttcccc	2	18	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12530097	T	T	12530097	1	4	93	0	1	0	0	0	0	0	0	0	11562	928	32	4		4	PARVA	11	12530097	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2546504	12530097	122476419	462	93691											
ABCC8	6833	broad.mit.edu	37	chr11	17464436	17464436	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcattggaatactcctgcagGggtccccgagtcagagggga	14	10	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17464436	C	C	17464436	1	2	93	0	1	0	0	0	0	0	0	0	58	1247	43	4		4	ABCC8	11	17464436	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	4934339	17464436	117542080	463	93692											
HPS5	11234	broad.mit.edu	37	chr11	18330609	18330609	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgtctgaacaggaaacatCacaaaagcagcagctgccta	8	10	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18330609	A	A	18330609	2	1	93	1	0	0	0	0	0	0	0	1	7409	813	29	3		3	HPS5	11	18330609	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	866173	18330609	116675907	464	93693											
PTPN5	84867	broad.mit.edu	37	chr11	18759572	18759572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagatgtttgaatccagGggctgctgtgcccccaactc	10	13	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18759572	T	T	18759572	1	4	93	0	1	0	0	0	0	0	0	0	12899	1247	43	2		2	PTPN5	11	18759572	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	428963	18759572	116246944	465	93694											
NELL1	4745	broad.mit.edu	37	chr11	21135337	21135337	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttattatgtttaattcCtagtgcacaaagtactattt	6	5	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21135337	T	T	21135337	1	4	93	0	1	0	0	0	0	0	0	0	10428	696	24	4		4	NELL1	11	21135337	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2375765	21135337	113871179	466	93695											
WT1	7490	broad.mit.edu	37	chr11	32410783	32410783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagacaggcacaagttcaActatcaaggcccgagtgaag	11	9	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32410783	G	G	32410783	1	3	93	0	1	0	0	0	0	0	0	0	17535	58	2	5		5	WT1	11	32410783	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	11275446	32410783	102595733	467	93696											
TRIM44	54765	broad.mit.edu	37	chr11	35747414	35747414	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtatagtaataactcTgcccttttgtttctttgtat	8	7	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35747414	A	A	35747414	1	1	93	0	1	0	0	0	0	0	0	0	16644	1595	55	5		5	TRIM44	11	35747414	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	3336631	35747414	99259102	468	93697											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45925464	45925464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaataacgatgctgctgtGgctcccagaccccagagtag	11	11	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45925464	T	T	45925464	1	4	93	0	1	0	0	0	0	0	0	0	9376	1363	47	2		2	MAPK8IP1	11	45925464	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	10178050	45925464	89081052	469	93698											
OR5D13	390142	broad.mit.edu	37	chr11	55541338	55541338	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactattatgtctcagaagcTctgtgctcttctggtggctg	10	10	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55541338	C	C	55541338	3	2	93	1	0	0	0	0	1	0	0	0	11248	1551	54	5	427	5	OR5D13	11	55541338	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	9615874	55541338	79465178	470	93699											
OR5F1	338674	broad.mit.edu	37	chr11	55761554	55761554	+	Frame_Shift_Del	DEL	G	-	-													aacaagagagcttgaaaagtGggggactgtcacagaagaag							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55761554	-	-	55761554	7	5	93	1	0	1	0	1	0	0	0	0	11252	1348	47	0	399	0	OR5F1	11	55761554	Frame_Shift_Del	DEL	G	TCGA-35-4122-01A-01D-1105-08	220216	55761554	79244962	471	93700											
OR8H2	390151	broad.mit.edu	37	chr11	55873453	55873453	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagagaagacaggactccaGgtaattaatatagcaggaat	11	6	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55873453	A	A	55873453	3	1	93	1	0	0	0	0	1	0	0	0	11332	1000	35	4	937	4	OR8H2	11	55873453	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	111899	55873453	79133063	472	93701											
OR8J1	219477	broad.mit.edu	37	chr11	56125432	56125432	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcttagttgctagcgctActtaatggaagaagatgaag	12	6	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56125432	G	G	56125432	1	3	93	0	1	0	0	0	0	0	0	0	11335	406	14	5		5	OR8J1	11	56125432	5'Flank	SNP	A	TCGA-35-4122-01A-01D-1105-08	251979	56125432	78881084	473	93702											
OR4D9	390199	broad.mit.edu	37	chr11	59282669	59282669	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaaaaaccatctccttcaGtggctgtgtcactcaaatgt	7	11	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59282669	A	A	59282669	3	1	93	1	0	0	0	0	1	0	0	0	11153	1029	36	4	286	4	OR4D9	11	59282669	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	3157237	59282669	75723847	474	93703											
MS4A4A	51338	broad.mit.edu	37	chr11	60070118	60070118	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttagcttggcgttttaTtcattccatcacccttactg	5	11	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60070118	C	C	60070118	2	2	93	1	0	0	0	0	0	0	0	1	9956	1500	52	5		5	MS4A4A	11	60070118	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	787449	60070118	74936398	475	93704											
MS4A10	341116	broad.mit.edu	37	chr11	60559974	60559974	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatgcagacaggctgacaGacttggctgtgggaggaaag	16	7	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60559974	T	T	60559974	1	4	93	0	1	0	0	0	0	0	0	0	9949	957	33	3		3	MS4A10	11	60559974	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	489856	60559974	74446542	476	93705											
CD6	923	broad.mit.edu	37	chr11	60776389	60776389	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctactgggcgccaagcctgGagttagtgccggagaggtgg	17	10	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60776389	C	C	60776389	1	2	93	0	1	0	0	0	0	0	0	0	3058	1189	41	4		4	CD6	11	60776389	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	216415	60776389	74230127	477	93706											
NXF1	10482	broad.mit.edu	37	chr11	62569036	62569036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgctgtcaaccatacctGggtctgaacggaggcctttg	11	11	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62569036	T	T	62569036	3	4	93	1	0	0	0	0	1	0	0	0	10877	1348	47	2	1267	2	NXF1	11	62569036	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1792647	62569036	72437480	478	93707											
CHRM1	1128	broad.mit.edu	37	chr11	62677090	62677090	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtcctgggaagccaggtGaggcctgagcagggccctgg	19	10	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62677090	T	T	62677090	1	4	93	0	1	0	0	0	0	0	0	0	3407	1305	45	3		3	CHRM1	11	62677090	3'UTR	SNP	G	TCGA-35-4122-01A-01D-1105-08	108054	62677090	72329426	479	93708											
RASGRP2	10235	broad.mit.edu	37	chr11	64496314	64496314	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttccctccacaggccagTacagaatgactccctcttac	5	17	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64496314	C	C	64496314	1	2	93	0	1	0	0	0	0	0	0	0	13183	1653	57	5		5	RASGRP2	11	64496314	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1819224	64496314	70510202	480	93709											
PCNXL3	399909	broad.mit.edu	37	chr11	65385568	65385568	+	Silent	SNP	C	T	T													cccctgctgaaggggagcctCagccaggagctgagcaagag							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65385568	T	T	65385568	2	4	93	1	0	0	0	0	0	0	0	1	11687	813	29	4		4	PCNXL3	11	65385568	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	889254	65385568	69620948	481	93710	419	2									
PCNXL3	399909	broad.mit.edu	37	chr11	65385575	65385575	+	Nonsense_Mutation	SNP	G	T	T													tgaaggggagcctcagccagGagctgagcaagagcttcctg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65385575	T	T	65385575	4	4	93	1	0	0	0	0	0	1	0	0	11687	1175	41	3	764	3	PCNXL3	11	65385575	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	7	65385575	69620941	482	93711	419	2									
PCNXL3	399909	broad.mit.edu	37	chr11	65402863	65402863	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtcctggatgatgcctccGacgagtacaagatcatcatg	10	10	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65402863	A	A	65402863	3	1	93	1	0	0	0	0	1	0	0	0	11687	1058	37	4	5250	4	PCNXL3	11	65402863	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	17288	65402863	69603653	483	93712											
PITPNM1	9600	broad.mit.edu	37	chr11	67259578	67259578	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgggtggtgttcccgGgccctcacgctccgcctggc	17	14	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67259578	C	C	67259578	3	2	93	1	0	0	0	0	1	0	0	0	12045	1232	43	4	77	4	PITPNM1	11	67259578	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1856715	67259578	67746938	484	93713											
CHKA	1119	broad.mit.edu	37	chr11	67833423	67833423	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatgcctggaggctccctgActgcagaagaaagaaaggct	13	9	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67833423	C	C	67833423	1	2	93	0	1	0	0	0	0	0	0	0	3378	290	10	5		5	CHKA	11	67833423	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	573845	67833423	67173093	485	93714											
RPS3	6188	broad.mit.edu	37	chr11	75115888	75115888	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagagccgcctgccatgccCcagccagtccccacagcata	8	20	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75115888	T	T	75115888	2	4	93	1	0	0	0	0	0	0	0	1	13754	610	22	4		4	RPS3	11	75115888	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	7282465	75115888	59890628	486	93715											
ODZ4	26011	broad.mit.edu	37	chr11	78399145	78399145	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagacaggttggtggtTatggtgacatcatccttgct	14	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78399145	G	G	78399145	2	3	93	1	0	0	0	0	0	0	0	1	10932	1744	61	5		5	ODZ4	11	78399145	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	3283257	78399145	56607371	487	93716											
DLG2	1740	broad.mit.edu	37	chr11	84245835	84245835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttgtaaaggatatagaCtgaacttcatattctaactt	7	5	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84245835	A	A	84245835	1	1	93	0	1	0	0	0	0	0	0	0	4595	580	20	3		3	DLG2	11	84245835	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	5846690	84245835	50760681	488	93717											
TAF1D	79101	broad.mit.edu	37	chr11	93464220	93464220	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaatttttttatggtcatgtCcacagcaaatgagaaactgc	7	7	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93464220	T	T	93464220	1	4	93	0	1	0	0	0	0	0	0	0	15641	870	30	4		4	TAF1D	11	93464220	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	9218385	93464220	41542296	489	93718											
KIAA1377	57562	broad.mit.edu	37	chr11	101814923	101814923	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaacattgttatataatAaatgcgtcattttgaaacta	5	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101814923	T	T	101814923	1	4	93	0	1	0	0	0	0	0	0	0	8297	377	13	5		5	KIAA1377	11	101814923	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	8350703	101814923	33191593	490	93719											
C11orf70	85016	broad.mit.edu	37	chr11	101951914	101951914	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatgccaatgcctattatAtgttaaaagcaccttttctt	4	8	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101951914	T	T	101951914	1	4	93	0	1	0	0	0	0	0	0	0	1671	464	16	5		5	C11orf70	11	101951914	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	136991	101951914	33054602	491	93720											
MMP3	4314	broad.mit.edu	37	chr11	102709892	102709892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttcatatgcggcatccaCgcctgaaggaagagatggcc	11	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102709892	T	T	102709892	3	4	93	1	0	0	0	0	1	0	0	0	9760	536	19	4	431	4	MMP3	11	102709892	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	757978	102709892	32296624	492	93721											
NPAT	4863	broad.mit.edu	37	chr11	108057298	108057298	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttttctctgagattcacTgaaacacattttaaaagctt	4	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108057298	A	A	108057298	5	1	93	1	0	0	0	0	0	0	1	0	10661	1594	55	5	3690	5	NPAT	11	108057298	Splice_Site	SNP	T	TCGA-35-4122-01A-01D-1105-08	5347406	108057298	26949218	493	93722											
ZNF259	8882	broad.mit.edu	37	chr11	116657265	116657265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccaggccagagatagCacgggtgatcaatccttcaa	10	12	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116657265	A	A	116657265	3	1	93	1	0	0	0	0	1	0	0	0	17927	710	25	3	966	3	ZNF259	11	116657265	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	8599967	116657265	18349251	494	93723											
MLL	4297	broad.mit.edu	37	chr11	118344632	118344632	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagagaaggttgttggtgaaGatgttgccacttcatcttct	11	6	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118344632	T	T	118344632	3	4	93	1	0	0	0	0	1	0	0	0	9713	942	33	3	2768	3	MLL	11	118344632	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1687367	118344632	16661884	495	93724											
MLL	4297	broad.mit.edu	37	chr11	118371889	118371889	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgaatcaagatgggacttGaggctgggcacagtggctca	14	8	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118371889	C	C	118371889	1	2	93	0	1	0	0	0	0	0	0	0	9713	1305	45	4		4	MLL	11	118371889	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	27257	118371889	16634627	496	93725											
BCL9L	283149	broad.mit.edu	37	chr11	118771514	118771514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggacactgagggaggagcCgaggacctggggcgacttga	18	9	0	2	rs150094487		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118771514	A	A	118771514	3	1	93	1	0	0	0	0	1	0	0	0	1387	652	23	1	1573	1	BCL9L	11	118771514	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	399625	118771514	16235002	497	93726											
C11orf63	79864	broad.mit.edu	37	chr11	122817536	122817536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaccaagtaactcttcCattttgagaatacagatgga	6	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122817536	A	A	122817536	1	1	93	0	1	0	0	0	0	0	0	0	1666	609	21	2		2	C11orf63	11	122817536	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	4046022	122817536	12188980	498	93727											
HSPA8	3312	broad.mit.edu	37	chr11	122930584	122930584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaactcagcaataaaatgGttgaccattcggttgtcaaa	7	7	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122930584	T	T	122930584	3	4	93	1	0	0	0	0	1	0	0	0	7485	1252	44	3	1243	3	HSPA8	11	122930584	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	113048	122930584	12075932	499	93728											
OR6X1	390260	broad.mit.edu	37	chr11	123624563	123624563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggaattcgtaggattgCggacagaatgtagatataag	13	3	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123624563	A	A	123624563	3	1	93	1	0	0	0	0	1	0	0	0	11306	768	27	3	276	3	OR6X1	11	123624563	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	693979	123624563	11381953	500	93729											
OR6T1	219874	broad.mit.edu	37	chr11	123813616	123813616	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcagtttcatcacagcagtGagcctgggccaccccaaggc	10	15	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123813616	T	T	123813616	2	4	93	1	0	0	0	0	0	0	0	1	11304	1277	45	3		3	OR6T1	11	123813616	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	189053	123813616	11192900	501	93730											
OR10G8	219869	broad.mit.edu	37	chr11	123900648	123900648	+	Frame_Shift_Del	DEL	G	-	-													tctatttctttcacttcctaGggggcaccgagtgtttcctc					rs146241525		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123900648	-	-	123900648	7	5	93	1	0	1	0	1	0	0	0	0	10997	1000	35	0	321	0	OR10G8	11	123900648	Frame_Shift_Del	DEL	G	TCGA-35-4122-01A-01D-1105-08	87032	123900648	11105868	502	93731											
B3GAT1	27087	broad.mit.edu	37	chr11	134252846	134252846	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccgtggggcctcgtaccGcaggccacccacgaaggcga	13	17	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134252846	T	T	134252846	2	4	93	1	0	0	0	0	0	0	0	1	1258	1086	38	3		3	B3GAT1	11	134252846	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	10352198	134252846	753670	503	93732											
WNK1	65125	broad.mit.edu	37	chr12	939105	939105	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaacccctctgcttctcAccccggtgagtaacgtctga	9	15	4	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	939105	G	G	939105	1	3	93	0	1	0	0	0	0	0	0	0	17504	174	6	5		5	WNK1	12	939105	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08		939105	132912790	504	93733											
LRTM2	654429	broad.mit.edu	37	chr12	1940308	1940308	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggctttcgccaacctctCcagcctgcagcggttggacc	11	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1940308	T	T	1940308	3	4	93	1	0	0	0	0	1	0	0	0	9132	855	30	4	281	4	LRTM2	12	1940308	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	1001203	1940308	131911587	505	93734											
CACNA1C	775	broad.mit.edu	37	chr12	2742881	2742881	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctcagtgagactaatgtGagtattactctgccctcccc	7	12	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2742881	T	T	2742881	1	4	93	0	1	0	0	0	0	0	0	0	2566	1305	45	3		3	CACNA1C	12	2742881	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	802573	2742881	131109014	506	93735											
DYRK4	8798	broad.mit.edu	37	chr12	4711545	4711545	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttttgttctcgttttgtAgttctttctgtcaaggggaa	9	7	5	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4711545	T	T	4711545	1	4	93	0	1	0	0	0	0	0	0	0	4898	435	15	5		5	DYRK4	12	4711545	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	1968664	4711545	129140350	507	93736											
KCNA5	3741	broad.mit.edu	37	chr12	5154911	5154911	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacggatcacgaggagccggCagtccttaaggaagagcagg	15	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5154911	T	T	5154911	3	4	93	1	0	0	0	0	1	0	0	0	8076	710	25	4	1600	4	KCNA5	12	5154911	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	443366	5154911	128696984	508	93737											
MLF2	8079	broad.mit.edu	37	chr12	6861263	6861263	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatggcagaagcgccaaacTgtcaatccctccaccaccct	8	16	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6861263	C	C	6861263	1	2	93	0	1	0	0	0	0	0	0	0	9709	1595	55	5		5	MLF2	12	6861263	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1706352	6861263	126990632	509	93738											
CDCA3	83461	broad.mit.edu	37	chr12	6959654	6959654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgctggtcttcataggtGtccgtgcaataccaagagta	10	10	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6959654	T	T	6959654	3	4	93	1	0	0	0	0	1	0	0	0	3117	1377	48	3	595	3	CDCA3	12	6959654	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	98391	6959654	126892241	510	93739											
CLEC6A	93978	broad.mit.edu	37	chr12	8612384	8612385	+	Intron	DEL	TG	-	-													ggtgtattctattgtgcattTgtgtgtgtatgttttattaa							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8612385	-	-	8612384	6	5	93	0	1	1	0	1	0	0	0	0	3552	1827	63	0		0	CLEC6A	12	8612384	Intron	DEL	TG	TCGA-35-4122-01A-01D-1105-08	1652730	8612384	125239511	511	93740											
AICDA	57379	broad.mit.edu	37	chr12	8758239	8758239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctcaaaagagcacaccagTaggtagagctgaacccttgg	11	10	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8758239	C	C	8758239	1	2	93	0	1	0	0	0	0	0	0	0	422	1653	57	5		5	AICDA	12	8758239	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	145855	8758239	125093656	512	93741											
GABARAPL1	23710	broad.mit.edu	37	chr12	10374401	10374401	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaggacaatcatgaggaaGactattttctgtatgtggcc	10	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10374401	T	T	10374401	3	4	93	1	0	0	0	0	1	0	0	0	6213	942	33	3	318	3	GABARAPL1	12	10374401	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1616162	10374401	123477494	513	93742											
KLRC3	3823	broad.mit.edu	37	chr12	10588693	10588694	+	5'Flank	DNP	GT	TA	TA													ggtataggcaatgtgcatgtGttggggctgagtaataatgt							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	10588694	TA	TA	10588693	1	4	93	0	1	0	0	0	0	0	0	0	8488	1392	48	3		3	KLRC3	12	10588693	5'Flank	DNP	GT	TCGA-35-4122-01A-01D-1105-08	214292	10588693	123263202	514	93743											
GRIN2B	2904	broad.mit.edu	37	chr12	13716171	13716171	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaacatgtgggcgtaggggCtcccatccatgaatcggccc	12	13	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13716171	T	T	13716171	3	4	93	1	0	0	0	0	1	0	0	0	6846	797	28	4	457	4	GRIN2B	12	13716171	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3127478	13716171	120135724	515	93744											
PLCZ1	89869	broad.mit.edu	37	chr12	18890379	18890379	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctgtcatgggttccaaAtacaattaactctgcccctt	8	11	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18890379	C	C	18890379	1	2	93	0	1	0	0	0	0	0	0	0	12139	116	4	5		5	PLCZ1	12	18890379	5'UTR	SNP	A	TCGA-35-4122-01A-01D-1105-08	5174208	18890379	114961516	516	93745											
SOX5	6660	broad.mit.edu	37	chr12	23893822	23893823	+	Missense_Mutation	DNP	CA	AG	AG													tgttcttgttgctgcttggcCagctccatttgctgacgctg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	23893823	AG	AG	23893822	3	1	93	1	0	0	0	0	1	0	0	0	15068	581	21	2	1625	2	SOX5	12	23893822	Missense_Mutation	DNP	CA	TCGA-35-4122-01A-01D-1105-08	5003443	23893822	109958073	517	93746											
ARNTL2	56938	broad.mit.edu	37	chr12	27538411	27538411	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcttgatgcctttcttttTaggcttgacaaattcttatg	6	8	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27538411	C	C	27538411	1	2	93	0	1	0	0	0	0	0	0	0	972	1769	61	5		5	ARNTL2	12	27538411	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	3644589	27538411	106313484	518	93747											
TMTC1	83857	broad.mit.edu	37	chr12	29709742	29709742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgttgagaaggaaagagtTtcttggaatcgcaaggccac	13	6	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29709742	A	A	29709742	1	1	93	0	1	0	0	0	0	0	0	0	16383	1856	64	5		5	TMTC1	12	29709742	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2171331	29709742	104142153	519	93748											
PKP2	5318	broad.mit.edu	37	chr12	32996339	32996339	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggctgaactatgtggcaaAcatcacctcccctgaaataa	7	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32996339	G	G	32996339	1	3	93	0	1	0	0	0	0	0	0	0	12080	58	2	5		5	PKP2	12	32996339	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3286597	32996339	100855556	520	93749											
ABCD2	225	broad.mit.edu	37	chr12	39994248	39994248	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgggctaagtgaatttttAtttccttaatagtttctctt	6	5	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39994248	G	G	39994248	1	3	93	0	1	0	0	0	0	0	0	0	61	464	16	5		5	ABCD2	12	39994248	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	6997909	39994248	93857647	521	93750											
MLL2	8085	broad.mit.edu	37	chr12	49437167	49437167	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgtatcggctttgccctCgaggccacgggattcttcat	12	11	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49437167	A	A	49437167	4	1	93	1	0	0	0	0	0	1	0	0	9714	893	31	3	11225	3	MLL2	12	49437167	Nonsense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	9442919	49437167	84414728	522	93751											
KRT6B	3854	broad.mit.edu	37	chr12	52845781	52845781	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaagccagagcggctgaCcccagggagcctggctgagt	16	12	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52845781	T	T	52845781	3	4	93	1	0	0	0	0	1	0	0	0	8552	507	18	4	1648	4	KRT6B	12	52845781	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3408614	52845781	81006114	523	93752											
KRT6C	286887	broad.mit.edu	37	chr12	52863627	52863627	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagcatccttgagtgccatCtccccacgctgctcagcatc	7	16	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52863627	A	A	52863627	3	1	93	1	0	0	0	0	1	0	0	0	8553	912	32	3	455	3	KRT6C	12	52863627	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	17846	52863627	80988268	524	93753											
KRT77	374454	broad.mit.edu	37	chr12	53090181	53090181	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacgacaaagtcattctcGctgccagtcctcttgttgat	9	11	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53090181	A	A	53090181	2	1	93	1	0	0	0	0	0	0	0	1	8561	1078	38	4		4	KRT77	12	53090181	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	226554	53090181	80761714	525	93754											
SPRYD3	84926	broad.mit.edu	37	chr12	53468892	53468892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcacttgccatcatcagCatggtaggctacagagtcag	9	11	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53468892	A	A	53468892	3	1	93	1	0	0	0	0	1	0	0	0	15227	710	25	3	1002	3	SPRYD3	12	53468892	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	378711	53468892	80383003	526	93755											
CSAD	51380	broad.mit.edu	37	chr12	53563881	53563881	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcggccataccaatctgcCtctccagatcctcggggacc	8	18	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53563881	T	T	53563881	3	4	93	1	0	0	0	0	1	0	0	0	3957	681	24	4	836	4	CSAD	12	53563881	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	94989	53563881	80288014	527	93756											
HOXC4	3221	broad.mit.edu	37	chr12	54448708	54448708	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagcaagtcctggaattaGagaaagagtttcattacaac	10	7	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54448708	C	C	54448708	3	2	93	1	0	0	0	0	1	0	0	0	7380	943	33	4	520	4	HOXC4	12	54448708	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	884827	54448708	79403187	528	93757											
CNPY2	10330	broad.mit.edu	37	chr12	56708901	56708901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctccacttctttttcccGttgtgcctttacctccacag	4	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56708901	T	T	56708901	1	4	93	0	1	0	0	0	0	0	0	0	3660	1160	40	3		3	CNPY2	12	56708901	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2260193	56708901	77142994	529	93758											
SHMT2	6472	broad.mit.edu	37	chr12	57626863	57626863	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagtgtaccaagcccacgtGagctgtgcccttggggccca	12	15	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57626863	C	C	57626863	1	2	93	0	1	0	0	0	0	0	0	0	14399	1305	45	4		4	SHMT2	12	57626863	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	917962	57626863	76225032	530	93759											
CPM	1368	broad.mit.edu	37	chr12	69263298	69263298	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatttaaaagatgaaccaaGacctttaaactgacttgaga	7	7	0	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69263298	C	C	69263298	1	2	93	0	1	0	0	0	0	0	0	0	3840	957	33	4		4	CPM	12	69263298	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	11636435	69263298	64588597	531	93760											
NAV3	89795	broad.mit.edu	37	chr12	78415581	78415581	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcggctgactcctgtaccagTcctacaaagatggacttatc	8	12	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78415581	A	A	78415581	3	1	93	1	0	0	0	0	1	0	0	0	10279	1664	58	5	1996	5	NAV3	12	78415581	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	9152283	78415581	55436314	532	93761											
LRRIQ1	84125	broad.mit.edu	37	chr12	85518342	85518342	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatagatgtatgtttactCcttttgatggatgatattag	8	3	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85518342	A	A	85518342	1	1	93	0	1	0	0	0	0	0	0	0	9116	870	30	3		3	LRRIQ1	12	85518342	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	7102761	85518342	48333553	533	93762											
DEPDC4	120863	broad.mit.edu	37	chr12	100646424	100646424	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgttgtattagtttgcagGttcttttctacaattaaaat	6	4	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100646424	A	A	100646424	1	1	93	0	1	0	0	0	0	0	0	0	4481	1276	44	4		4	DEPDC4	12	100646424	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	15128082	100646424	33205471	534	93763											
STAB2	55576	broad.mit.edu	37	chr12	104123896	104123896	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttttggttgatttcagagCacggtgtatataaacaataa	9	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104123896	G	G	104123896	3	3	93	1	0	0	0	0	1	0	0	0	15356	709	25	4	5279	4	STAB2	12	104123896	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3477472	104123896	29727999	535	93764											
STAB2	55576	broad.mit.edu	37	chr12	104151918	104151918	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgcacaccagggctggCccctctgatgacttccttct	8	17	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104151918	T	T	104151918	1	4	93	0	1	0	0	0	0	0	0	0	15356	754	26	4		4	STAB2	12	104151918	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	28022	104151918	29699977	536	93765											
USP30	84749	broad.mit.edu	37	chr12	109510068	109510068	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggtggtgaaagggattaTagtaaggttttcagtctgtt	15	2	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109510068	C	C	109510068	1	2	93	0	1	0	0	0	0	0	0	0	17188	1421	49	5		5	USP30	12	109510068	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	5358150	109510068	24341827	537	93766											
MYO1H	283446	broad.mit.edu	37	chr12	109826823	109826823	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaagacgtttatggctgccCgtgacagagacccaacttac	9	12	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109826823	G	G	109826823	1	3	93	0	1	0	0	0	0	0	0	0	10169	667	23	4		4	MYO1H	12	109826823	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	316755	109826823	24025072	538	93767											
TBX5	6910	broad.mit.edu	37	chr12	114832619	114832619	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtgcagaacgctgtatttTttgagccaaatccattattt	8	7	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114832619	C	C	114832619	3	2	93	1	0	0	0	0	1	0	0	0	15783	1841	64	5	1049	5	TBX5	12	114832619	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	5005796	114832619	19019276	539	93768											
NOS1	4842	broad.mit.edu	37	chr12	117662801	117662801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggggtgggaaccaagtgGccactggactgtaacccacc	14	13	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117662801	T	T	117662801	1	4	93	0	1	0	0	0	0	0	0	0	10636	1218	42	3		3	NOS1	12	117662801	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2830182	117662801	16189094	540	93769											
KSR2	283455	broad.mit.edu	37	chr12	117962721	117962721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagcaccacgttctcatGccgtgtctgcctgtaggcca	10	13	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117962721	T	T	117962721	3	4	93	1	0	0	0	0	1	0	0	0	8654	1319	46	3	725	3	KSR2	12	117962721	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	299920	117962721	15889174	541	93770											
SUDS3	64426	broad.mit.edu	37	chr12	118838381	118838381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgattgggtggctgggGggcagatattcttatactat	14	5	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118838381	T	T	118838381	1	4	93	0	1	0	0	0	0	0	0	0	15485	1247	43	2		2	SUDS3	12	118838381	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	875660	118838381	15013514	542	93771											
CIT	11113	broad.mit.edu	37	chr12	120214157	120214157	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaccaatcatggaaagTataccttctccagtttcgca	6	11	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120214157	A	A	120214157	1	1	93	0	1	0	0	0	0	0	0	0	3469	1653	57	5		5	CIT	12	120214157	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1375776	120214157	13637738	543	93772											
NCOR2	9612	broad.mit.edu	37	chr12	124812069	124812069	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attggcgctgagcggcggggActcttcccactggtcatatt	13	11	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124812069	G	G	124812069	3	3	93	1	0	0	0	0	1	0	0	0	10331	275	10	5	487	5	NCOR2	12	124812069	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	4597912	124812069	9039826	544	93773											
NCOR2	9612	broad.mit.edu	37	chr12	124832795	124832795	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcgcttgggggcggccgTctcatgggggggtcctgagc	21	10	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124832795	A	A	124832795	3	1	93	1	0	0	0	0	1	0	0	0	10331	1667	58	5	3710	5	NCOR2	12	124832795	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	20726	124832795	9019100	545	93774											
TMEM132B	114795	broad.mit.edu	37	chr12	125946343	125946343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtttcctcccggcgctGccaggccacccttgccttct	11	18	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125946343	T	T	125946343	1	4	93	0	1	0	0	0	0	0	0	0	16169	1334	46	3		3	TMEM132B	12	125946343	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1113548	125946343	7905552	546	93775											
GPR133	283383	broad.mit.edu	37	chr12	131439012	131439012	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgacctccgagagagccaTggaaaagctgctgcggctgt	13	10	0	2	rs144264048		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131439012	A	A	131439012	3	1	93	1	0	0	0	0	1	0	0	0	6708	1464	51	5	4	5	GPR133	12	131439012	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	5492669	131439012	2412883	547	93776											
MMP17	4326	broad.mit.edu	37	chr12	132322635	132322635	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttgtgggcagataggggGctgggagggggcctgcccgg	22	9	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132322635	A	A	132322635	1	1	93	0	1	0	0	0	0	0	0	0	9749	1218	42	4		4	MMP17	12	132322635	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	883623	132322635	1529260	548	93777											
MMP17	4326	broad.mit.edu	37	chr12	132326125	132326125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccctccccgcggggacaGggcccttcttgcccttagtt	12	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132326125	T	T	132326125	1	4	93	0	1	0	0	0	0	0	0	0	9749	1015	35	2		2	MMP17	12	132326125	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	3490	132326125	1525770	549	93778											
POLE	5426	broad.mit.edu	37	chr12	133245323	133245323	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtccaccatggcagaggGctgggaggggtgagaaagca	17	8	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133245323	C	C	133245323	3	2	93	1	0	0	0	0	1	0	0	0	12291	1217	42	4	5064	4	POLE	12	133245323	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	919198	133245323	606572	550	93779											
TUBA3C	7278	broad.mit.edu	37	chr13	19751266	19751266	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgatctcagccacggacAgctgctcgtggtaggccttc	13	12	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751266	T	T	19751266	3	4	93	1	0	0	0	0	1	0	0	0	16872	188	7	5	503	5	TUBA3C	13	19751266	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08		19751266	95418612	551	93780											
TUBA3C	7278	broad.mit.edu	37	chr13	19751284	19751284	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagctgctcgtggtaggccTtctcggctgagatgaccggg	15	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19751284	A	A	19751284	3	1	93	1	0	0	0	0	1	0	0	0	16872	1609	56	5	521	5	TUBA3C	13	19751284	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	18	19751284	95418594	552	93781											
TPTE2	93492	broad.mit.edu	37	chr13	20012237	20012237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacatctttcatacctcggCagttaaaaatatttcggagg	8	8	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20012237	A	A	20012237	3	1	93	1	0	0	0	0	1	0	0	0	16555	710	25	3	566	3	TPTE2	13	20012237	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	260953	20012237	95157641	553	93782											
MIPEP	4285	broad.mit.edu	37	chr13	24449047	24449047	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaacagttcagccactcGcctataaatgaaatgagccc	6	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24449047	T	T	24449047	2	4	93	1	0	0	0	0	0	0	0	1	9685	1101	38	3		3	MIPEP	13	24449047	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	4436810	24449047	90720831	554	93783											
FRY	10129	broad.mit.edu	37	chr13	32869204	32869204	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgtttaccttagatgagtGaattacctgatacaggaatt	8	5	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32869204	T	T	32869204	1	4	93	0	1	0	0	0	0	0	0	0	6123	1305	45	3		3	FRY	13	32869204	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	8420157	32869204	82300674	555	93784											
POSTN	10631	broad.mit.edu	37	chr13	38144680	38144680	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actataatttgatctttataAtctaggcatagatccatgta	5	6	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38144680	G	G	38144680	1	3	93	0	1	0	0	0	0	0	0	0	12354	116	4	5		5	POSTN	13	38144680	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	5275476	38144680	77025198	556	93785											
DGKH	160851	broad.mit.edu	37	chr13	42784849	42784849	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccattgacttggcaacagaaGaggtgtcgcagatgcagcta	12	9	0	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42784849	T	T	42784849	4	4	93	1	0	0	0	0	0	1	0	0	4510	943	33	3	3056	3	DGKH	13	42784849	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	4640169	42784849	72385029	557	93786											
COG3	83548	broad.mit.edu	37	chr13	46067470	46067470	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactaatagacatttttattCtttcattttagtgagctttt	4	5	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46067470	G	G	46067470	1	3	93	0	1	0	0	0	0	0	0	0	3691	928	32	4		4	COG3	13	46067470	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	3282621	46067470	69102408	558	93787											
FNDC3A	22862	broad.mit.edu	37	chr13	49618894	49618894	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatagctaagtttggagacAtaaagctggtaggcagaagt	12	5	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49618894	G	G	49618894	1	3	93	0	1	0	0	0	0	0	0	0	6027	232	8	5		5	FNDC3A	13	49618894	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	3551424	49618894	65550984	559	93788											
FNDC3A	22862	broad.mit.edu	37	chr13	49684359	49684359	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttttttcccccttgcCctttcctgggtcactgcagg	8	14	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49684359	T	T	49684359	1	4	93	0	1	0	0	0	0	0	0	0	6027	638	22	4		4	FNDC3A	13	49684359	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	65465	49684359	65485519	560	93789											
CAB39L	81617	broad.mit.edu	37	chr13	49918472	49918472	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacatataaaagttgcagaaGaacattttcatttgcgccac	6	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49918472	C	C	49918472	1	2	93	0	1	0	0	0	0	0	0	0	2552	957	33	4		4	CAB39L	13	49918472	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	234113	49918472	65251406	561	93790											
CLN5	1203	broad.mit.edu	37	chr13	77570114	77570114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggaatggtatgaacttttCcaacttggcaactgtacatt	8	7	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77570114	A	A	77570114	3	1	93	1	0	0	0	0	1	0	0	0	3576	854	30	3	574	3	CLN5	13	77570114	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	27651642	77570114	37599764	562	93791											
PROZ	8858	broad.mit.edu	37	chr13	113814507	113814507	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactgtatgtacccccaccAcaaaccacaggcctcctcat	4	18	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113814507	G	G	113814507	1	3	93	0	1	0	0	0	0	0	0	0	12668	174	6	5		5	PROZ	13	113814507	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	36244393	113814507	1355371	563	93792											
OR4K1	79544	broad.mit.edu	37	chr14	20404336	20404336	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggacctgccattctgtggtCccaatgaggtggatagcttc	12	10	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20404336	T	T	20404336	3	4	93	1	0	0	0	0	1	0	0	0	11161	855	30	4	513	4	OR4K1	14	20404336	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08		20404336	86945204	564	93793											
CHD8	57680	broad.mit.edu	37	chr14	21895652	21895652	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgcacgtcccatcacaAtagcaaggagcactcgagct	8	14	2	0	rs12885609		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21895652	G	G	21895652	1	3	93	0	1	0	0	0	0	0	0	0	3362	116	4	5		5	CHD8	14	21895652	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	1491316	21895652	85453888	565	93794											
KIAA0586	9786	broad.mit.edu	37	chr14	58941426	58941426	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataatggtcctccatttccGccagttgcttctacttttca	5	12	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58941426	T	T	58941426	2	4	93	1	0	0	0	0	0	0	0	1	8256	1074	38	3		3	KIAA0586	14	58941426	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	37045774	58941426	48408114	566	93795											
ESR2	2100	broad.mit.edu	37	chr14	64726975	64726975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattctaaatcagaacacGgccttgttgaaggtaggtat	10	6	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64726975	T	T	64726975	1	4	93	0	1	0	0	0	0	0	0	0	5299	1131	39	1		1	ESR2	14	64726975	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	5785549	64726975	42622565	567	93796											
HEATR4	399671	broad.mit.edu	37	chr14	73945385	73945385	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttctctctgagaatttacCcagataaagagctgggtagt	10	7	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73945385	T	T	73945385	3	4	93	1	0	0	0	0	1	0	0	0	7097	623	22	4	77	4	HEATR4	14	73945385	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	9218410	73945385	33404155	568	93797											
YLPM1	56252	broad.mit.edu	37	chr14	75230867	75230867	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccattcccagtcctacttGccctcttctcaggcatctcc	5	18	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75230867	A	A	75230867	2	1	93	1	0	0	0	0	0	0	0	1	17613	1310	46	4		4	YLPM1	14	75230867	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	1285482	75230867	32118673	569	93798											
DLST	1743	broad.mit.edu	37	chr14	75365238	75365238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaattggagaggtcctgGgaggtaggtgtatgagcaca	17	5	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75365238	A	A	75365238	1	1	93	0	1	0	0	0	0	0	0	0	4609	1247	43	4		4	DLST	14	75365238	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	134371	75365238	31984302	570	93799											
TSHR	7253	broad.mit.edu	37	chr14	81609452	81609453	+	Missense_Mutation	DNP	TC	AT	AT													caggatactcataacaacgcTcattattacgtcttctttga							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	81609453	AT	AT	81609452	3	1	93	1	0	0	0	0	1	0	0	0	16747	1538	54	5	1225	5	TSHR	14	81609452	Missense_Mutation	DNP	TC	TCGA-35-4122-01A-01D-1105-08	6244214	81609452	25740088	571	93800											
ITPK1	3705	broad.mit.edu	37	chr14	93412788	93412788	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagggcccgggagagctcCcggatgacctcgtcgctcgg	16	15	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93412788	A	A	93412788	2	1	93	1	0	0	0	0	0	0	0	1	7986	610	22	2		2	ITPK1	14	93412788	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	11803336	93412788	13936752	572	93801											
IFI27L1	122509	broad.mit.edu	37	chr14	94568260	94568260	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaagatgatgtctacagcAgccattgccaacgggggcgg	14	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94568260	G	G	94568260	2	3	93	1	0	0	0	0	0	0	0	1	7583	175	7	5		5	IFI27L1	14	94568260	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	1155472	94568260	12781280	573	93802											
CLMN	79789	broad.mit.edu	37	chr14	95696400	95696400	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttagcaaacacccaagtgCgccattaccttttctagatg	6	12	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95696400	T	T	95696400	1	4	93	0	1	0	0	0	0	0	0	0	3574	783	27	4		4	CLMN	14	95696400	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1128140	95696400	11653140	574	93803											
PPP1R13B	23368	broad.mit.edu	37	chr14	104205214	104205214	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgcactggtccccggctGcagctcacctcatagatgat	11	14	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104205214	A	A	104205214	1	1	93	0	1	0	0	0	0	0	0	0	12458	1334	46	4		4	PPP1R13B	14	104205214	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	8508814	104205214	3144326	575	93804											
GPR132	29933	broad.mit.edu	37	chr14	105518574	105518574	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttaaaacatttccaaaTtgattttttagagcaattat	5	4	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105518574	C	C	105518574	1	2	93	0	1	0	0	0	0	0	0	0	6707	1508	52	5		5	GPR132	14	105518574	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1313360	105518574	1830966	576	93805											
OR4M2	390538	broad.mit.edu	37	chr15	22368951	22368951	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctttgacctctacactgctAtctgccgacccctccactat	4	18	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22368951	T	T	22368951	3	4	93	1	0	0	0	0	1	0	0	0	11170	449	16	5	378	5	OR4M2	15	22368951	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08		22368951	80162441	577	93806											
GABRA5	2558	broad.mit.edu	37	chr15	27188545	27188545	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggctgggcctgggatggcaAaaaagccttggaagcagcca	15	9	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27188545	G	G	27188545	3	3	93	1	0	0	0	0	1	0	0	0	6224	14	1	5	1091	5	GABRA5	15	27188545	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	4819594	27188545	75342847	578	93807											
C15orf55	256646	broad.mit.edu	37	chr15	34638362	34638362	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtatcacacttggggaggcTagggaaggagattgtacctt	15	6	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34638362	C	C	34638362	1	2	93	0	1	0	0	0	0	0	0	0	1816	1537	53	5		5	C15orf55	15	34638362	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	7449817	34638362	67893030	579	93808											
AQR	9716	broad.mit.edu	37	chr15	35224745	35224745	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcacatacaaggtaccctcCaaccttccaatagacacact	3	15	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35224745	G	G	35224745	1	3	93	0	1	0	0	0	0	0	0	0	837	609	21	4		4	AQR	15	35224745	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	586383	35224745	67306647	580	93809											
CCNDBP1	23582	broad.mit.edu	37	chr15	43486931	43486931	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattctattcacagagcaagTcatgtgacccctcagccaga	7	12	4	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43486931	A	A	43486931	3	1	93	1	0	0	0	0	1	0	0	0	2949	1664	58	5	1017	5	CCNDBP1	15	43486931	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	8262186	43486931	59044461	581	93810											
SLC28A2	9153	broad.mit.edu	37	chr15	45565056	45565056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatgctgttgaggttgcAtagagtgtataagggctgtg	16	3	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45565056	G	G	45565056	1	3	93	0	1	0	0	0	0	0	0	0	14646	232	8	5		5	SLC28A2	15	45565056	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	2078125	45565056	56966336	582	93811											
SLC12A1	6557	broad.mit.edu	37	chr15	48541816	48541816	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctccaactttttcctgGcctcatatgcacttattaat	3	12	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48541816	A	A	48541816	3	1	93	1	0	0	0	0	1	0	0	0	14495	1203	42	4	1879	4	SLC12A1	15	48541816	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2976760	48541816	53989576	583	93812											
TEX9	374618	broad.mit.edu	37	chr15	56704497	56704497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataatcttttttactataCaggaattagaaaataaaaga	4	5	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56704497	A	A	56704497	1	1	93	0	1	0	0	0	0	0	0	0	15907	493	17	3		3	TEX9	15	56704497	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	8162681	56704497	45826895	584	93813											
RORA	6095	broad.mit.edu	37	chr15	60795017	60795017	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaaagtacacggtgttgttCtgagagtcaaaggcacggca	12	8	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60795017	A	A	60795017	3	1	93	1	0	0	0	0	1	0	0	0	13639	912	32	3	462	3	RORA	15	60795017	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	4090520	60795017	41736375	585	93814											
TLN2	83660	broad.mit.edu	37	chr15	63000635	63000635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggctttgatgggactgcGggggcacatggagagggacc	19	7	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63000635	T	T	63000635	1	4	93	0	1	0	0	0	0	0	0	0	16071	1131	39	1		1	TLN2	15	63000635	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2205618	63000635	39530757	586	93815											
USP3	9960	broad.mit.edu	37	chr15	63829318	63829318	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaagataaagttcagcacAcagtatgtatggattgcagt	10	6	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63829318	C	C	63829318	3	2	93	1	0	0	0	0	1	0	0	0	17187	159	6	5	257	5	USP3	15	63829318	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	828683	63829318	38702074	587	93816											
IGDCC4	57722	broad.mit.edu	37	chr15	65678177	65678177	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctgacttacctttctttTggagtgactccggccttcag	9	12	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65678177	C	C	65678177	3	2	93	1	0	0	0	0	1	0	0	0	7639	1821	63	5	592	5	IGDCC4	15	65678177	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1848859	65678177	36853215	588	93817											
FEM1B	10116	broad.mit.edu	37	chr15	68583378	68583378	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatcattagcctagttgAagccggagctcacactgaca	8	12	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68583378	C	C	68583378	3	2	93	1	0	0	0	0	1	0	0	0	5867	246	9	5	1688	5	FEM1B	15	68583378	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	2905201	68583378	33948014	589	93818											
PKM2	5315	broad.mit.edu	37	chr15	72499545	72499545	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgagcaaggaagaccttctCtgcaggaatctcaatgccta	9	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72499545	A	A	72499545	4	1	93	1	0	0	0	0	0	1	0	0	12072	922	32	3	876	3	PKM2	15	72499545	Nonsense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3916167	72499545	30031847	590	93819											
PML	5371	broad.mit.edu	37	chr15	74337110	74337110	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctggccctacacaacgtgAgcttcatggagctgctgagt	11	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74337110	G	G	74337110	3	3	93	1	0	0	0	0	1	0	0	0	12230	304	11	5	3461	5	PML	15	74337110	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	1837565	74337110	28194282	591	93820											
TM2D3	80213	broad.mit.edu	37	chr15	102191816	102191816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatggaaagtgacttcgtaTactaaagggaatttttataa	8	3	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102191816	C	C	102191816	1	2	93	0	1	0	0	0	0	0	0	0	16088	1421	49	5		5	TM2D3	15	102191816	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	27854706	102191816	339576	592	93821											
RHBDF1	64285	broad.mit.edu	37	chr16	109338	109338	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcccacacacatcatccaTgcagtgcacctgcgcagagc	9	16	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109338	G	G	109338	3	3	93	1	0	0	0	0	1	0	0	0	13428	1464	51	5	676	5	RHBDF1	16	109338	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08		109338	90245415	593	93822											
NHLRC4	283948	broad.mit.edu	37	chr16	617995	617995	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggactacttgcctggggCtgtgcacagcttctcgttgg	14	11	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	617995	T	T	617995	1	4	93	0	1	0	0	0	0	0	0	0	10503	812	28	4		4	NHLRC4	16	617995	5'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	508657	617995	89736758	594	93823											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1817800	1817801	+	Intron	DNP	CC	TA	TA													gccaccctgaccgctctcccCcacaggcactggcaagctgg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	1817801	TA	TA	1817800	1	4	93	0	1	0	0	0	0	0	0	0	9378	638	22	4		4	MAPK8IP3	16	1817800	Intron	DNP	CC	TCGA-35-4122-01A-01D-1105-08	1199805	1817800	88536953	595	93824											
GPR139	124274	broad.mit.edu	37	chr16	20043226	20043226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaaagccttgagcgtgGcggctgccatggtgcggaac	16	9	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043226	T	T	20043226	3	4	93	1	0	0	0	0	1	0	0	0	6713	1203	42	3	172	3	GPR139	16	20043226	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	18225426	20043226	70311527	596	93825											
GSG1L	146395	broad.mit.edu	37	chr16	27802749	27802749	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gctctggtgcttcctgtgcgGagctccggggccaggaatcc	15	13	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27802749	C	C	27802749	3	2	93	1	0	0	0	0	1	0	0	0	6887	1174	41	4	61	4	GSG1L	16	27802749	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	7759523	27802749	62552004	597	93826											
ATXN2L	11273	broad.mit.edu	37	chr16	28845407	28845407	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaatccaccagtaccccaActtctccggggccccggact	7	17	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28845407	G	G	28845407	3	3	93	1	0	0	0	0	1	0	0	0	1216	43	2	5	2109	5	ATXN2L	16	28845407	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	1042658	28845407	61509346	598	93827											
KCTD13	253980	broad.mit.edu	37	chr16	29934481	29934481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcagctctcccaggaaCataggcatggggactccgaa	13	11	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29934481	A	A	29934481	1	1	93	0	1	0	0	0	0	0	0	0	8170	493	17	3		3	KCTD13	16	29934481	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1089074	29934481	60420272	599	93828											
MYST1	84148	broad.mit.edu	37	chr16	31141569	31141569	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagcctccccagcggccctGagcacctgcctcctgcagga	11	18	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31141569	A	A	31141569	1	1	93	0	1	0	0	0	0	0	0	0	10196	1305	45	4		4	MYST1	16	31141569	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1207088	31141569	59213184	600	93829											
MYST1	84148	broad.mit.edu	37	chr16	31141970	31141970	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggggcaggacttgccctgaGatgggccacgatcctgcttc	15	12	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31141970	C	C	31141970	1	2	93	0	1	0	0	0	0	0	0	0	10196	957	33	4		4	MYST1	16	31141970	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	401	31141970	59212783	601	93830											
ITGAD	3681	broad.mit.edu	37	chr16	31429545	31429545	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctaaatccccatcactgtCctcccttgtcccaatctgtc	3	19	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31429545	A	A	31429545	1	1	93	0	1	0	0	0	0	0	0	0	7954	870	30	3		3	ITGAD	16	31429545	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	287575	31429545	58925208	602	93831											
CES7	221223	broad.mit.edu	37	chr16	55900000	55900000	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctggtccttgaaggcccAgttccccggagcatgctgat	11	14	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55900000	T	T	55900000	3	4	93	1	0	0	0	0	1	0	0	0	3302	188	7	5	1183	5	CES7	16	55900000	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	24470455	55900000	34454753	603	93832											
CCDC135	84229	broad.mit.edu	37	chr16	57734232	57734232	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccaccaggactaagatgGtgtgagaaacaaactcaccc	9	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57734232	A	A	57734232	1	1	93	0	1	0	0	0	0	0	0	0	2795	1276	44	4		4	CCDC135	16	57734232	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1834232	57734232	32620521	604	93833											
FAM65A	79567	broad.mit.edu	37	chr16	67575922	67575922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcccgagccccttccCatccaagttgccttccgcag	8	19	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67575922	A	A	67575922	2	1	93	1	0	0	0	0	0	0	0	1	5650	581	21	2		2	FAM65A	16	67575922	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	9841690	67575922	22778831	605	93834											
WDR59	79726	broad.mit.edu	37	chr16	74951893	74951893	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggaccacgtcaccagttgAtagtccttggaccctagaaa	10	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74951893	G	G	74951893	2	3	93	1	0	0	0	0	0	0	0	1	17435	340	12	5		5	WDR59	16	74951893	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	7375971	74951893	15402860	606	93835											
VAT1L	57687	broad.mit.edu	37	chr16	77896819	77896819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttgaaaaagcaccaggCtggcccttgctctgctctca	9	13	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77896819	A	A	77896819	1	1	93	0	1	0	0	0	0	0	0	0	17257	812	28	3		3	VAT1L	16	77896819	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2944926	77896819	12457934	607	93836											
CRISPLD2	83716	broad.mit.edu	37	chr16	84906837	84906837	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtggtggctcacacctgcActttgggaggcagaggcagg	17	10	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84906837	G	G	84906837	1	3	93	0	1	0	0	0	0	0	0	0	3915	174	6	5		5	CRISPLD2	16	84906837	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	7010018	84906837	5447916	608	93837											
OR1D2	4991	broad.mit.edu	37	chr17	2996027	2996027	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcataggagatggctttgttAtgggactggaggttcaccag	15	6	1	1	rs137876385		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2996027	C	C	2996027	3	2	93	1	0	0	0	0	1	0	0	0	11047	446	16	5	677	5	OR1D2	17	2996027	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08		2996027	78199183	609	93838											
FBXO39	162517	broad.mit.edu	37	chr17	6683889	6683889	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgaacctcaactacaaCtgtatctccgacgagctgct	6	15	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6683889	T	T	6683889	2	4	93	1	0	0	0	0	0	0	0	1	5804	564	20	4		4	FBXO39	17	6683889	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	3687862	6683889	74511321	610	93839											
YBX2	51087	broad.mit.edu	37	chr17	7193049	7193049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggggcggaaaggcctaaGgcaaggaacaaggctctgag	16	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7193049	T	T	7193049	1	4	93	0	1	0	0	0	0	0	0	0	17597	1015	35	2		2	YBX2	17	7193049	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	509160	7193049	74002161	611	93840											
NLGN2	57555	broad.mit.edu	37	chr17	7317997	7317997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggttttctcagcaccgGggaccaggctgcaaaaggca	12	13	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7317997	T	T	7317997	3	4	93	1	0	0	0	0	1	0	0	0	10557	1232	43	2	688	2	NLGN2	17	7317997	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	124948	7317997	73877213	612	93841											
TP53	7157	broad.mit.edu	37	chr17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatggtgaggatgggcCtccggttcatgccgcccatg	15	10	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577535	A	A	7577535	3	1	93	1	0	0	0	0	1	0	0	0	16505	681	24	2	544	2	TP53	17	7577535	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	259538	7577535	73617675	613	93842											
TP53	7157	broad.mit.edu	37	chr17	7578175	7578175	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccccagttgcaaaccagAcctcaggcggctcatagggc	11	14	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7578175	G	G	7578175	5	3	93	1	0	0	0	0	0	0	1	0	16505	289	10	5	620	5	TP53	17	7578175	Splice_Site	SNP	A	TCGA-35-4122-01A-01D-1105-08	640	7578175	73617035	614	93843											
DNAH2	146754	broad.mit.edu	37	chr17	7705165	7705165	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcccacttccgtttccatCtgccttttcatcctgtgtca	4	16	4	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7705165	G	G	7705165	1	3	93	0	1	0	0	0	0	0	0	0	4642	928	32	4		4	DNAH2	17	7705165	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	126990	7705165	73490045	615	93844											
PIK3R5	23533	broad.mit.edu	37	chr17	8793452	8793452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtcttggcctgaaaccCcaggaggagatgggctttgc	15	10	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8793452	A	A	8793452	1	1	93	0	1	0	0	0	0	0	0	0	12017	638	22	2		2	PIK3R5	17	8793452	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1088287	8793452	72401758	616	93845											
MYH4	4622	broad.mit.edu	37	chr17	10354322	10354322	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catatgatgaaaaaacccctCaagattttcagtgatgttga	7	7	2	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10354322	A	A	10354322	1	1	93	0	1	0	0	0	0	0	0	0	10131	841	29	3		3	MYH4	17	10354322	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1560870	10354322	70840888	617	93846											
MYH4	4622	broad.mit.edu	37	chr17	10356616	10356616	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagcaatggtttcatccagAcctgccatctcttctgtgag	8	11	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10356616	T	T	10356616	2	4	93	1	0	0	0	0	0	0	0	1	10131	262	10	5		5	MYH4	17	10356616	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	2294	10356616	70838594	618	93847											
C17orf48	56985	broad.mit.edu	37	chr17	10608747	10608747	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacttgatgcatatgacttGagtgtcttgggcgtggatca	12	6	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10608747	C	C	10608747	3	2	93	1	0	0	0	0	1	0	0	0	1875	1281	45	4	506	4	C17orf48	17	10608747	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	252131	10608747	70586463	619	93848											
DNAH9	1770	broad.mit.edu	37	chr17	11608469	11608469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatgagtacctgggaaacaCacctcgcttggtgatcacac	9	12	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11608469	T	T	11608469	3	4	93	1	0	0	0	0	1	0	0	0	4648	478	17	4	5621	4	DNAH9	17	11608469	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	999722	11608469	69586741	620	93849											
MYOCD	93649	broad.mit.edu	37	chr17	12656522	12656522	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcccctcagcattcaccGctgggggctgtgaaaagccc	11	14	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12656522	T	T	12656522	2	4	93	1	0	0	0	0	0	0	0	1	10181	1074	38	3		3	MYOCD	17	12656522	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	1048053	12656522	68538688	621	93850											
MYO15A	51168	broad.mit.edu	37	chr17	18059689	18059689	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcttccctccacccaggctGagggccagcaacagggatct	10	15	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18059689	C	C	18059689	1	2	93	0	1	0	0	0	0	0	0	0	10157	1305	45	4		4	MYO15A	17	18059689	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	5403167	18059689	63135521	622	93851											
SLC47A2	146802	broad.mit.edu	37	chr17	19610092	19610092	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctggaaacagaggccccAtgagctgacagcctgccctg	11	14	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19610092	G	G	19610092	1	3	93	0	1	0	0	0	0	0	0	0	14762	232	8	5		5	SLC47A2	17	19610092	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	1550403	19610092	61585118	623	93852											
TMEM132E	124842	broad.mit.edu	37	chr17	32959718	32959718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaactgttcctcccttccCccaggtatccagcagctgtg	8	17	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32959718	A	A	32959718	1	1	93	0	1	0	0	0	0	0	0	0	16171	638	22	2		2	TMEM132E	17	32959718	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	13349626	32959718	48235492	624	93853											
UNC45B	146862	broad.mit.edu	37	chr17	33475291	33475291	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcccagcagatggcagaGgtggaagcggtacagctgaa	15	9	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33475291	A	A	33475291	2	1	93	1	0	0	0	0	0	0	0	1	17115	991	35	4		4	UNC45B	17	33475291	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	515573	33475291	47719919	625	93854											
UNC45B	146862	broad.mit.edu	37	chr17	33507682	33507682	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagtgcatgtgcaacatggTgctccacaaggaggtgaggc	15	9	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33507682	A	A	33507682	3	1	93	1	0	0	0	0	1	0	0	0	17115	1696	59	5	2432	5	UNC45B	17	33507682	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	32391	33507682	47687528	626	93855											
ACACA	31	broad.mit.edu	37	chr17	35691601	35691601	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagtaactaaaatcgtaAatcccctggccctcccttat	6	12	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35691601	C	C	35691601	1	2	93	0	1	0	0	0	0	0	0	0	106	29	1	5		5	ACACA	17	35691601	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	2183919	35691601	45503609	627	93856											
ACACA	31	broad.mit.edu	37	chr17	35766360	35766360	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgggacatacctagccctCaagattgacatcagagtaga	9	10	2	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35766360	G	G	35766360	3	3	93	1	0	0	0	0	1	0	0	0	106	825	29	4	7402	4	ACACA	17	35766360	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	74759	35766360	45428850	628	93857											
CDK12	51755	broad.mit.edu	37	chr17	37646907	37646908	+	Missense_Mutation	DNP	GG	TA	TA													ctctccctccagagctccctGgtggagatctgtctccccca							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	37646908	TA	TA	37646907	3	4	93	1	0	0	0	0	1	0	0	0	3158	1348	47	2	2039	2	CDK12	17	37646907	Missense_Mutation	DNP	GG	TCGA-35-4122-01A-01D-1105-08	1880547	37646907	43548303	629	93858											
KRT24	192666	broad.mit.edu	37	chr17	38859775	38859775	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctgcccccaaaagcaccGctagaccccccactcaggct	7	19	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38859775	A	A	38859775	2	1	93	1	0	0	0	0	0	0	0	1	8532	1078	38	4		4	KRT24	17	38859775	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	1212868	38859775	42335435	630	93859											
KRTAP4-5	85289	broad.mit.edu	37	chr17	39305910	39305910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttgcagcagctggggCggcagcaggtggtcctgcag	20	10	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39305910	A	A	39305910	3	1	93	1	0	0	0	0	1	0	0	0	8626	768	27	3	439	3	KRTAP4-5	17	39305910	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	446135	39305910	41889300	631	93860											
ATP6V0A1	535	broad.mit.edu	37	chr17	40642418	40642418	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttatgtgtaccatttgAtgagtttcaagaaatgtaca	7	5	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40642418	G	G	40642418	1	3	93	0	1	0	0	0	0	0	0	0	1172	348	12	5		5	ATP6V0A1	17	40642418	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	1336508	40642418	40552792	632	93861											
PSME3	10197	broad.mit.edu	37	chr17	40985780	40985780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatggcgtctttgtctccCtggggataccagctctgagc	11	14	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40985780	A	A	40985780	1	1	93	0	1	0	0	0	0	0	0	0	12814	696	24	2		2	PSME3	17	40985780	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	343362	40985780	40209430	633	93862											
IFI35	3430	broad.mit.edu	37	chr17	41166314	41166314	+	Nonstop_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcacctctgagtcaggcTaggggcctccccttctcatc	8	16	5	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41166314	A	A	41166314	4	1	93	1	0	0	0	0	0	0	0	0	7586	1535	53	5	891	5	IFI35	17	41166314	Nonstop_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	180534	41166314	40028896	634	93863											
C17orf57	124989	broad.mit.edu	37	chr17	45507065	45507065	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactatacaaatagttccAtgtacaattctagaatcaga	4	7	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45507065	G	G	45507065	1	3	93	0	1	0	0	0	0	0	0	0	1881	232	8	5		5	C17orf57	17	45507065	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	4340751	45507065	35688145	635	93864											
TBX21	30009	broad.mit.edu	37	chr17	45811197	45811198	+	Missense_Mutation	DNP	CG	TT	TT													ggggccgcgtgaggactacgCgctacccgcgggactggagg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	45811198	TT	TT	45811197	3	4	93	1	0	0	0	0	1	0	0	0	15779	768	27	4	379	4	TBX21	17	45811197	Missense_Mutation	DNP	CG	TCGA-35-4122-01A-01D-1105-08	304132	45811197	35384013	636	93865											
MYST2	11143	broad.mit.edu	37	chr17	47875785	47875785	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctccagccccaatgtatctCacgatgagagcattgccaag	8	13	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47875785	T	T	47875785	3	4	93	1	0	0	0	0	1	0	0	0	10197	826	29	4	459	4	MYST2	17	47875785	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2064588	47875785	33319425	637	93866											
EME1	146956	broad.mit.edu	37	chr17	48453005	48453005	+	Frame_Shift_Del	DEL	C	-	-													ttccaaagatccctgaagttCccctccatgataccccagag							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48453005	-	-	48453005	7	5	93	1	0	1	0	1	0	0	0	0	5130	855	30	0	438	0	EME1	17	48453005	Frame_Shift_Del	DEL	C	TCGA-35-4122-01A-01D-1105-08	577220	48453005	32742205	638	93867											
ANKFN1	162282	broad.mit.edu	37	chr17	54445526	54445526	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaccactgactgatccagAgaatgaaccttttgatgaag	9	9	0	6			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54445526	G	G	54445526	1	3	93	0	1	0	0	0	0	0	0	0	625	319	11	5		5	ANKFN1	17	54445526	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	5992521	54445526	26749684	639	93868											
ANKFN1	162282	broad.mit.edu	37	chr17	54534412	54534412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttggtagaaatttttttGtgttcaaaacaataaaattc	5	4	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54534412	T	T	54534412	1	4	93	0	1	0	0	0	0	0	0	0	625	1392	48	3		3	ANKFN1	17	54534412	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	88886	54534412	26660798	640	93869											
CLTC	1213	broad.mit.edu	37	chr17	57758217	57758217	+	Intron	DEL	C	-	-													tctaatgagaggccaacttaCgcttttttaaaaccaacttg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57758217	-	-	57758217	6	5	93	0	1	1	0	1	0	0	0	0	3598	551	19	0		0	CLTC	17	57758217	Intron	DEL	C	TCGA-35-4122-01A-01D-1105-08	3223805	57758217	23436993	641	93870											
TANC2	26115	broad.mit.edu	37	chr17	61489214	61489214	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgctgttaaagatcaagGatatagctaaggcctgaaat	9	5	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61489214	T	T	61489214	1	4	93	0	1	0	0	0	0	0	0	0	15664	1189	41	3		3	TANC2	17	61489214	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	3730997	61489214	19705996	642	93871											
KCNH6	81033	broad.mit.edu	37	chr17	61623123	61623123	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccacccctagcctcacctCtacatcccctggaagtacaa	6	18	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61623123	A	A	61623123	3	1	93	1	0	0	0	0	1	0	0	0	8106	912	32	3	2899	3	KCNH6	17	61623123	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	133909	61623123	19572087	643	93872											
LLGL2	3993	broad.mit.edu	37	chr17	73566349	73566349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttaagtgagcaggggcGgctgggtcccggggctggga	20	7	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73566349	T	T	73566349	1	4	93	0	1	0	0	0	0	0	0	0	8908	1131	39	1		1	LLGL2	17	73566349	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	11943226	73566349	7628861	644	93873											
PGS1	9489	broad.mit.edu	37	chr17	76392386	76392386	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgaatttttctcctctctCaggggcagataagagtagcc	9	9	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76392386	T	T	76392386	1	4	93	0	1	0	0	0	0	0	0	0	11903	841	29	4		4	PGS1	17	76392386	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2826037	76392386	4802824	645	93874											
SMCHD1	23347	broad.mit.edu	37	chr18	2740835	2740835	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggtatggctactttctAtaccattttggtttgattta	7	6	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2740835	G	G	2740835	1	3	93	0	1	0	0	0	0	0	0	0	14902	464	16	5		5	SMCHD1	18	2740835	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08		2740835	75336413	646	93875											
SMCHD1	23347	broad.mit.edu	37	chr18	2752505	2752505	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaaacatttagttgtaAtaaaataaaagataatgaca	7	3	0	3	rs151002873	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2752505	G	G	2752505	3	3	93	1	0	0	0	0	1	0	0	0	14902	101	4	5	4435	5	SMCHD1	18	2752505	Missense_Mutation	SNP	A	TCGA-35-4122-01A-01D-1105-08	11670	2752505	75324743	647	93876											
EPB41L3	23136	broad.mit.edu	37	chr18	5488977	5488977	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcagcaaacactgcgtcaTtagttttctggcctgggctc	10	12	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5488977	C	C	5488977	1	2	93	0	1	0	0	0	0	0	0	0	5196	1508	52	5		5	EPB41L3	18	5488977	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	2736472	5488977	72588271	648	93877											
PPP4R1	9989	broad.mit.edu	37	chr18	9550049	9550049	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcccagggcctcgcttaCctggcagacaaagacaaagg	11	12	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9550049	A	A	9550049	5	1	93	1	0	0	0	0	0	0	1	0	12504	521	18	3	316	3	PPP4R1	18	9550049	Splice_Site	SNP	C	TCGA-35-4122-01A-01D-1105-08	4061072	9550049	68527199	649	93878											
AFG3L2	10939	broad.mit.edu	37	chr18	12340269	12340269	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgtaattcttccaaagaaGatttcttcagagactcgacc	7	9	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12340269	A	A	12340269	2	1	93	1	0	0	0	0	0	0	0	1	360	932	33	4		4	AFG3L2	18	12340269	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	2790220	12340269	65736979	650	93879											
LAMA3	3909	broad.mit.edu	37	chr18	21531775	21531775	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagctgattgttcatgcactAaaacaggccccctttccatt	6	12	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21531775	G	G	21531775	1	3	93	0	1	0	0	0	0	0	0	0	8679	377	13	5		5	LAMA3	18	21531775	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	9191506	21531775	56545473	651	93880											
CELF4	56853	broad.mit.edu	37	chr18	35145565	35145565	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtactgaggcttgcgttgtCagcctgtccgtttgctaacg	13	10	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35145565	A	A	35145565	3	1	93	1	0	0	0	0	1	0	0	0	3248	826	29	3	1468	3	CELF4	18	35145565	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	13613790	35145565	42931683	652	93881											
KIAA1468	57614	broad.mit.edu	37	chr18	59878389	59878389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttctctttattatagatcGagctgggagcattagtaccc	8	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59878389	T	T	59878389	3	4	93	1	0	0	0	0	1	0	0	0	8306	1058	37	3	536	3	KIAA1468	18	59878389	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	24732824	59878389	18198859	653	93882											
CCDC102B	79839	broad.mit.edu	37	chr18	66564739	66564739	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgcagagtctgtcttcactCgtacacgcctccacatttgg	8	14	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66564739	A	A	66564739	1	1	93	0	1	0	0	0	0	0	0	0	2763	899	31	3		3	CCDC102B	18	66564739	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	6686350	66564739	11512509	654	93883											
CD226	10666	broad.mit.edu	37	chr18	67563198	67563198	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgcacaggccacgtcaTctgaggctgacaagtgagtg	13	11	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67563198	C	C	67563198	3	2	93	1	0	0	0	0	1	0	0	0	3016	1435	50	5	560	5	CD226	18	67563198	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	998459	67563198	10514050	655	93884											
ZNF236	7776	broad.mit.edu	37	chr18	74606978	74606978	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccttcacaggctccatccGcgaggagaacggcgtgcgct	12	15	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74606978	A	A	74606978	3	1	93	1	0	0	0	0	1	0	0	0	17915	1087	38	4	1459	4	ZNF236	18	74606978	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	7043780	74606978	3470270	656	93885											
STK11	6794	broad.mit.edu	37	chr19	1203337	1203337	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcgtggaattctccaagAagtgtttggagagatggaag	13	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1203337	T	T	1203337	1	4	93	0	1	0	0	0	0	0	0	0	15405	261	9	5		5	STK11	19	1203337	5'Flank	SNP	A	TCGA-35-4122-01A-01D-1105-08		1203337	57925646	657	93886											
AMH	268	broad.mit.edu	37	chr19	2249448	2249448	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcaccagtggcctcatcttCcgagaagacttggactggcc	12	13	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2249448	T	T	2249448	2	4	93	1	0	0	0	0	0	0	0	1	572	854	30	4		4	AMH	19	2249448	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	1046111	2249448	56879535	658	93887											
S1PR4	8698	broad.mit.edu	37	chr19	3180007	3180008	+	3'UTR	DNP	GG	CT	CT													tgccaggcaggccctcctggGgtacaggaagctgtgtgcac							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	3180008	CT	CT	3180007	1	2	93	0	1	0	0	0	0	0	0	0	13907	1247	43	4		4	S1PR4	19	3180007	3'UTR	DNP	GG	TCGA-35-4122-01A-01D-1105-08	930559	3180007	55948976	659	93888											
MATK	4145	broad.mit.edu	37	chr19	3783108	3783108	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagggaagggggtctgccctCctgggcgtcccctacccctg	14	15	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3783108	T	T	3783108	1	4	93	0	1	0	0	0	0	0	0	0	9424	870	30	4		4	MATK	19	3783108	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	603101	3783108	55345875	660	93889											
RANBP3	8498	broad.mit.edu	37	chr19	5921393	5921393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcctgctgcagccacacCctgagagtcgccctttagcc	10	16	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5921393	A	A	5921393	1	1	93	0	1	0	0	0	0	0	0	0	13137	638	22	2		2	RANBP3	19	5921393	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	2138285	5921393	53207590	661	93890											
RFX2	5990	broad.mit.edu	37	chr19	6042002	6042002	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgcctccccaggtggcaaAggctggagtcagggagaggg	18	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6042002	C	C	6042002	1	2	93	0	1	0	0	0	0	0	0	0	13371	87	3	5		5	RFX2	19	6042002	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	120609	6042002	53086981	662	93891											
MUC16	94025	broad.mit.edu	37	chr19	9046507	9046507	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatctggactactatgggaAaaactggaggttgttctgga	13	6	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9046507	G	G	9046507	2	3	93	1	0	0	0	0	0	0	0	1	10067	11	1	5		5	MUC16	19	9046507	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	3004505	9046507	50082476	663	93892											
ZNF266	10781	broad.mit.edu	37	chr19	9526280	9526280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattttctataatggaatcCccaatcatctctaaatgtga	5	8	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9526280	A	A	9526280	1	1	93	0	1	0	0	0	0	0	0	0	17931	638	22	2		2	ZNF266	19	9526280	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	479773	9526280	49602703	664	93893											
MRPL4	51073	broad.mit.edu	37	chr19	10363029	10363029	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtcgaaggatgaaatttgGgggtgtccaggggtcgtctc	17	6	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10363029	A	A	10363029	1	1	93	0	1	0	0	0	0	0	0	0	9897	1247	43	4		4	MRPL4	19	10363029	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	836749	10363029	48765954	665	93894											
ICAM3	3385	broad.mit.edu	37	chr19	10445249	10445249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctgtgcaagaactcgcCgtccacctcgagagtggcac	11	14	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10445249	A	A	10445249	3	1	93	1	0	0	0	0	1	0	0	0	7551	652	23	1	508	1	ICAM3	19	10445249	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	82220	10445249	48683734	666	93895											
SMARCA4	6597	broad.mit.edu	37	chr19	11151948	11151948	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcttgtcgacctgggtgCtggctgtcctattttactac	10	11	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11151948	T	T	11151948	1	4	93	0	1	0	0	0	0	0	0	0	14884	812	28	4		4	SMARCA4	19	11151948	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	706699	11151948	47977035	667	93896											
CNN1	1264	broad.mit.edu	37	chr19	11657313	11657313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgtgccaccacgcctgGctaatttttgtatttttagt	9	9	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11657313	A	A	11657313	1	1	93	0	1	0	0	0	0	0	0	0	3641	1218	42	4		4	CNN1	19	11657313	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	505365	11657313	47471670	668	93897											
ZNF709	163051	broad.mit.edu	37	chr19	12577468	12577468	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaacattctaaaccttGgaaccttgctgatgagcaag	7	10	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12577468	C	C	12577468	1	2	93	0	1	0	0	0	0	0	0	0	18241	1363	47	4		4	ZNF709	19	12577468	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	920155	12577468	46551515	669	93898											
NANOS3	342977	broad.mit.edu	37	chr19	13987854	13987855	+	5'Flank	DEL	GC	-	-													gagtattagtggggcaccagGcccccctgtgacaataagga					rs149586075	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13987855	-	-	13987854	6	5	93	0	1	1	0	1	0	0	0	0	10247	1218	42	0		0	NANOS3	19	13987854	5'Flank	DEL	GC	TCGA-35-4122-01A-01D-1105-08	1410386	13987854	45141129	670	93899											
EMR2	30817	broad.mit.edu	37	chr19	14856931	14856931	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatggctgcgtctgttttttCtgggtcccttcaaaagaccc	10	11	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14856931	A	A	14856931	1	1	93	0	1	0	0	0	0	0	0	0	5147	928	32	3		3	EMR2	19	14856931	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	869077	14856931	44272052	671	93900											
PGLYRP2	114770	broad.mit.edu	37	chr19	15586207	15586207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctggcatttcctcacctGtgcagctgtcccacccaccc	6	19	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15586207	T	T	15586207	1	4	93	0	1	0	0	0	0	0	0	0	11889	1392	48	3		3	PGLYRP2	19	15586207	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	729276	15586207	43542776	672	93901											
TSHZ3	57616	broad.mit.edu	37	chr19	31769680	31769680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagatggtggctttggggGttccacctgtggaatctggg	17	7	1	1	rs147659074	byFrequency	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31769680	T	T	31769680	3	4	93	1	0	0	0	0	1	0	0	0	16750	1261	44	3	2230	3	TSHZ3	19	31769680	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	16183473	31769680	27359303	673	93902											
WDR88	126248	broad.mit.edu	37	chr19	33663430	33663430	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcatttgaatgaactttggGcacctggagatgcaatcgtg	11	7	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33663430	C	C	33663430	1	2	93	0	1	0	0	0	0	0	0	0	17462	1218	42	4		4	WDR88	19	33663430	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1893750	33663430	25465553	674	93903											
UBA2	10054	broad.mit.edu	37	chr19	34929438	34929438	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actaatattttaaaatttccTtgacaacgtaaaacgtagtt	4	6	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34929438	G	G	34929438	1	3	93	0	1	0	0	0	0	0	0	0	16954	1624	56	5		5	UBA2	19	34929438	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	1266008	34929438	24199545	675	93904											
ZNF181	339318	broad.mit.edu	37	chr19	35231797	35231797	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcattcaaagtctactcttTctgaaccacaaaaaatttct	2	10	6	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35231797	C	C	35231797	3	2	93	1	0	0	0	0	1	0	0	0	17875	1783	62	5	525	5	ZNF181	19	35231797	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	302359	35231797	23897186	676	93905											
DMKN	93099	broad.mit.edu	37	chr19	36003604	36003604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccggggtatccgtggaccCacggagtccccagacctcca	11	16	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36003604	A	A	36003604	3	1	93	1	0	0	0	0	1	0	0	0	4622	595	21	2	1292	2	DMKN	19	36003604	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	771807	36003604	23125379	677	93906											
TMEM149	79713	broad.mit.edu	37	chr19	36231430	36231430	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcgttacgaaatcgccgtGgtcattgagtccgcagtttt	13	9	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36231430	C	C	36231430	3	2	93	1	0	0	0	0	1	0	0	0	16185	1348	47	4	886	4	TMEM149	19	36231430	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	227826	36231430	22897553	678	93907											
ZNF571	51276	broad.mit.edu	37	chr19	38056034	38056034	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgatgttcactaagttgTttgccacaaataaaggcctt	7	9	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38056034	A	A	38056034	3	1	93	1	0	0	0	0	1	0	0	0	18130	1722	60	5	537	5	ZNF571	19	38056034	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1824604	38056034	21072949	679	93908											
RYR1	6261	broad.mit.edu	37	chr19	38954167	38954167	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggctggacctacggcccGgtgaggggctgcctgcagcc	17	14	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38954167	C	C	38954167	2	2	93	1	0	0	0	0	0	0	0	1	13879	1130	39	4		4	RYR1	19	38954167	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	898133	38954167	20174816	680	93909											
RYR1	6261	broad.mit.edu	37	chr19	39070591	39070591	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctcgtgtgtccctgccttCcccctgacccctggccctgt	8	20	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39070591	A	A	39070591	1	1	93	0	1	0	0	0	0	0	0	0	13879	870	30	3		3	RYR1	19	39070591	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	116424	39070591	20058392	681	93910											
SIRT2	22933	broad.mit.edu	37	chr19	39371248	39371248	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgctggggttccacagTgggggttccctctgaggaaa	15	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39371248	A	A	39371248	1	1	93	0	1	0	0	0	0	0	0	0	14451	1711	59	5		5	SIRT2	19	39371248	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	300657	39371248	19757735	682	93911											
LGALS13	29124	broad.mit.edu	37	chr19	40097767	40097767	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgtataactaggaattttCttggggaatgttatttgtac	9	4	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40097767	G	G	40097767	1	3	93	0	1	0	0	0	0	0	0	0	8812	928	32	4		4	LGALS13	19	40097767	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	726519	40097767	19031216	683	93912											
PRX	57716	broad.mit.edu	37	chr19	40900895	40900895	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccttcaggcctgacagctGcattccactgacggccacag	9	16	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40900895	A	A	40900895	4	1	93	1	0	0	0	0	0	1	0	0	12748	1328	46	4	1025	4	PRX	19	40900895	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	803128	40900895	18228088	684	93913											
SHKBP1	92799	broad.mit.edu	37	chr19	41083199	41083199	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcttctccaggtgatcggGagagcgagtttggggcgagg	17	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41083199	T	T	41083199	1	4	93	0	1	0	0	0	0	0	0	0	14397	1189	41	3		3	SHKBP1	19	41083199	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	182304	41083199	18045784	685	93914											
ADCK4	79934	broad.mit.edu	37	chr19	41220467	41220467	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggccccagggccccaCaaggccaaccaacagtctgg	11	18	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41220467	G	G	41220467	3	3	93	1	0	0	0	0	1	0	0	0	290	478	17	4	1619	4	ADCK4	19	41220467	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	137268	41220467	17908516	686	93915											
ATP1A3	478	broad.mit.edu	37	chr19	42482021	42482021	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcagagggaggttgggggGaagcggtccccctgtgtcaa	19	8	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42482021	T	T	42482021	1	4	93	0	1	0	0	0	0	0	0	0	1134	1189	41	3		3	ATP1A3	19	42482021	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	1261554	42482021	16646962	687	93916											
MEGF8	1954	broad.mit.edu	37	chr19	42866259	42866259	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taggctgggctgcgggggctCcccctgctccccaatgcctc	13	17	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42866259	T	T	42866259	3	4	93	1	0	0	0	0	1	0	0	0	9556	855	30	4	5663	4	MEGF8	19	42866259	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	384238	42866259	16262724	688	93917											
CARD8	22900	broad.mit.edu	37	chr19	48735020	48735020	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgatctcaaaacagacttTagaagcataagaggaaacta	7	7	1	3	rs146319637		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48735020	C	C	48735020	3	2	93	1	0	0	0	0	1	0	0	0	2677	1763	61	5	1202	5	CARD8	19	48735020	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	5868761	48735020	10393963	689	93918											
CGB	1082	broad.mit.edu	37	chr19	49539928	49539928	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttcctggaacatctccatCtttggtgcccggaaatgtgg	10	11	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49539928	G	G	49539928	1	3	93	0	1	0	0	0	0	0	0	0	3326	928	32	4		4	CGB	19	49539928	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	804908	49539928	9589055	690	93919											
ASPDH	554235	broad.mit.edu	37	chr19	51016102	51016103	+	Intron	DNP	GG	TT	TT													ggaggggagggttgaggtcaGggaaggatatccacttcagg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51016103	TT	TT	51016102	1	4	93	0	1	0	0	0	0	0	0	0	1055	1015	35	2		2	ASPDH	19	51016102	Intron	DNP	GG	TCGA-35-4122-01A-01D-1105-08	1476174	51016102	8112881	691	93920											
SIGLEC7	27036	broad.mit.edu	37	chr19	51656446	51656446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagggggagcctcaggacCtatcaggacaagaagccacc	12	11	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51656446	A	A	51656446	3	1	93	1	0	0	0	0	1	0	0	0	14426	680	24	2	1374	2	SIGLEC7	19	51656446	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	640344	51656446	7472537	692	93921											
ZNF808	388558	broad.mit.edu	37	chr19	53057748	53057748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtcaccgggcatcccttGtataccatcgtagacttcac	7	15	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53057748	T	T	53057748	3	4	93	1	0	0	0	0	1	0	0	0	18302	1377	48	3	1589	3	ZNF808	19	53057748	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1401302	53057748	6071235	693	93922											
ZNF611	81856	broad.mit.edu	37	chr19	53208178	53208178	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatggaaactttgtcacaTgcttcacatttctaaggttt	6	8	3	0	rs140758614	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53208178	A	A	53208178	1	1	93	0	1	0	0	0	0	0	0	0	18164	1479	51	5		5	ZNF611	19	53208178	3'UTR	SNP	T	TCGA-35-4122-01A-01D-1105-08	150430	53208178	5920805	694	93923											
ZNF331	55422	broad.mit.edu	37	chr19	54080224	54080224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgaatgtaaggactgtgGgaaggcctttagtcgtggct	14	6	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54080224	A	A	54080224	3	1	93	1	0	0	0	0	1	0	0	0	17975	1232	43	4	420	4	ZNF331	19	54080224	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	872046	54080224	5048759	695	93924											
DPRX	503834	broad.mit.edu	37	chr19	54139992	54139992	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatgcagacacactacccaGattgcccaacgctgctcacc	6	16	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54139992	T	T	54139992	3	4	93	1	0	0	0	0	1	0	0	0	4778	942	33	3	336	3	DPRX	19	54139992	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	59768	54139992	4988991	696	93925											
CACNG7	59284	broad.mit.edu	37	chr19	54444923	54444924	+	Intron	DNP	GG	TT	TT													gaatggagagaggtcttgggGgcctggttcctgagtccagg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54444924	TT	TT	54444923	1	4	93	0	1	0	0	0	0	0	0	0	2588	1247	43	2		2	CACNG7	19	54444923	Intron	DNP	GG	TCGA-35-4122-01A-01D-1105-08	304931	54444923	4684060	697	93926											
LILRB5	10990	broad.mit.edu	37	chr19	54754668	54754668	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctagtggatggccaggggGgcgtagatgctgggttcagc	20	7	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54754668	A	A	54754668	2	1	93	1	0	0	0	0	0	0	0	1	8866	1219	43	4		4	LILRB5	19	54754668	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	309745	54754668	4374315	698	93927											
TTYH1	57348	broad.mit.edu	37	chr19	54941973	54941973	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actcctgggtcctcctccctCcctttctctttctgcagagg	7	17	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54941973	G	G	54941973	1	3	93	0	1	0	0	0	0	0	0	0	16865	870	30	4		4	TTYH1	19	54941973	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	187305	54941973	4187010	699	93928											
NLRP7	199713	broad.mit.edu	37	chr19	55452324	55452324	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgctaactccgagtcttcTtctgcatctcccagctcagg	7	14	5	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55452324	C	C	55452324	2	2	93	1	0	0	0	0	0	0	0	1	10577	1606	56	5		5	NLRP7	19	55452324	Silent	SNP	T	TCGA-35-4122-01A-01D-1105-08	510351	55452324	3676659	700	93929											
TMEM150B	284417	broad.mit.edu	37	chr19	55832010	55832010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaaatcagagtgagtgGgcgactctcaccaacaactt	12	9	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55832010	T	T	55832010	1	4	93	0	1	0	0	0	0	0	0	0	16191	1247	43	2		2	TMEM150B	19	55832010	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	379686	55832010	3296973	701	93930											
SBK2	646643	broad.mit.edu	37	chr19	56042603	56042603	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgatgccaatgccgtaggcCgtcacgatggctgagtgcgc	14	12	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56042603	T	T	56042603	2	4	93	1	0	0	0	0	0	0	0	1	13973	639	23	4		4	SBK2	19	56042603	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	210593	56042603	3086380	702	93931											
DUXA	503835	broad.mit.edu	37	chr19	57669876	57669876	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagatggaggggggcggtCaaggaatattgcaagggtcc	18	5	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57669876	A	A	57669876	1	1	93	0	1	0	0	0	0	0	0	0	4874	841	29	3		3	DUXA	19	57669876	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1627273	57669876	1459107	703	93932											
ZNF211	10520	broad.mit.edu	37	chr19	58152630	58152631	+	Missense_Mutation	DNP	GC	TT	TT													tagagaaggactttttgagtGcagtaaatgtgggaaagcat							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	58152631	TT	TT	58152630	3	4	93	1	0	0	0	0	1	0	0	0	17893	1319	46	3	829	3	ZNF211	19	58152630	Missense_Mutation	DNP	GC	TCGA-35-4122-01A-01D-1105-08	482754	58152630	976353	704	93933											
ZNF418	147686	broad.mit.edu	37	chr19	58437834	58437834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagactggagaagaatttcCcacattctctgcactcataa	8	10	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58437834	A	A	58437834	3	1	93	1	0	0	0	0	1	0	0	0	18022	623	22	2	319	2	ZNF418	19	58437834	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	285204	58437834	691149	705	93934											
C19orf18	147685	broad.mit.edu	37	chr19	58477923	58477923	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catataggagattgccatccCacatatcagggcaatgctga	9	10	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58477923	T	T	58477923	3	4	93	1	0	0	0	0	1	0	0	0	1929	594	21	4	313	4	C19orf18	19	58477923	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	40089	58477923	651060	706	93935											
FAM113A	64773	broad.mit.edu	37	chr20	2819264	2819264	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaggaggaaacccccaGtgatacgttccccgaggggc	14	13	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2819264	A	A	2819264	3	1	93	1	0	0	0	0	1	0	0	0	5447	1029	36	4	808	4	FAM113A	20	2819264	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08		2819264	60206256	707	93936											
PCNA	5111	broad.mit.edu	37	chr20	5096118	5096118	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtacatctgcagacataCtgagtgtcaccgttgaagag	13	8	2	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5096118	T	T	5096118	3	4	93	1	0	0	0	0	1	0	0	0	11682	565	20	4	110	4	PCNA	20	5096118	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	2276854	5096118	57929402	708	93937											
RBBP9	10741	broad.mit.edu	37	chr20	18476640	18476640	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caattcagtattaacttgtgTtatgaaatgaagtaggttaa	8	3	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18476640	C	C	18476640	1	2	93	0	1	0	0	0	0	0	0	0	13214	1740	60	5		5	RBBP9	20	18476640	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	13380522	18476640	44548880	709	93938											
CST9L	128821	broad.mit.edu	37	chr20	23546737	23546737	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactccacctattgcacacaGagagattaatgtgaacacac	7	11	0	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23546737	C	C	23546737	1	2	93	0	1	0	0	0	0	0	0	0	4014	957	33	4		4	CST9L	20	23546737	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	5070097	23546737	39478783	710	93939											
C20orf160	140706	broad.mit.edu	37	chr20	30602764	30602764	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccgggcgccgggcagccTgtaggagcagcgtgagccgc	19	13	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30602764	G	G	30602764	3	3	93	1	0	0	0	0	1	0	0	0	2115	1580	55	5	94	5	C20orf160	20	30602764	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	7056027	30602764	32422756	711	93940											
AHCY	191	broad.mit.edu	37	chr20	32878079	32878079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctctcctccctggcaGccagcactcctctgcactcc	6	21	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32878079	T	T	32878079	1	4	93	0	1	0	0	0	0	0	0	0	409	986	34	3		3	AHCY	20	32878079	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2275315	32878079	30147441	712	93941											
KIAA0406	9675	broad.mit.edu	37	chr20	36640042	36640042	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggaagcaggttagcatctGagttccgcagcatgacttcc	11	10	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36640042	C	C	36640042	4	2	93	1	0	0	0	0	0	1	0	0	8243	1294	45	4	1120	4	KIAA0406	20	36640042	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	3761963	36640042	26385478	713	93942											
RALGAPB	57148	broad.mit.edu	37	chr20	37154091	37154091	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtaaatccaacagaattgcGaagatcctccattaatatcc	5	10	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37154091	C	C	37154091	3	2	93	1	0	0	0	0	1	0	0	0	13123	1058	37	4	1874	4	RALGAPB	20	37154091	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	514049	37154091	25871429	714	93943											
PTPRT	11122	broad.mit.edu	37	chr20	40713284	40713284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggatgctctatcacccaCcaccctattgccctggtgac	7	16	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40713284	A	A	40713284	1	1	93	0	1	0	0	0	0	0	0	0	12920	522	18	3		3	PTPRT	20	40713284	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	3559193	40713284	22312236	715	93944											
PTPRT	11122	broad.mit.edu	37	chr20	40827639	40827639	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctatttatgtccacaagcAgttaggatgacttgctccca	7	11	1	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40827639	G	G	40827639	1	3	93	0	1	0	0	0	0	0	0	0	12920	203	7	5		5	PTPRT	20	40827639	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	114355	40827639	22197881	716	93945											
R3HDML	140902	broad.mit.edu	37	chr20	42974015	42974015	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtctgcaactatgccaTtaagtaagtgcctgcaccaa	8	12	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42974015	C	C	42974015	3	2	93	1	0	0	0	0	1	0	0	0	12997	1493	52	5	640	5	R3HDML	20	42974015	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	2146376	42974015	20051505	717	93946											
WFDC12	128488	broad.mit.edu	37	chr20	43752613	43752613	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatggagatgttcagactagGtggtctctgagggccctgcc	14	9	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43752613	C	C	43752613	1	2	93	0	1	0	0	0	0	0	0	0	17477	1276	44	4		4	WFDC12	20	43752613	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	778598	43752613	19272907	718	93947											
WFDC2	10406	broad.mit.edu	37	chr20	44108308	44108308	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccactggcacctaaagacaCggaggctctgggagatttct	11	11	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44108308	G	G	44108308	1	3	93	0	1	0	0	0	0	0	0	0	17479	551	19	4		4	WFDC2	20	44108308	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	355695	44108308	18917212	719	93948											
SLC12A5	57468	broad.mit.edu	37	chr20	44672631	44672631	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtatagaaggctgagttCtgggaaacagacccatcagg	14	7	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44672631	T	T	44672631	1	4	93	0	1	0	0	0	0	0	0	0	14499	928	32	4		4	SLC12A5	20	44672631	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	564323	44672631	18352889	720	93949											
SLC12A5	57468	broad.mit.edu	37	chr20	44674597	44674597	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctgcgagattggcatcctCattgcatccctcgacgaggt	10	12	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44674597	A	A	44674597	2	1	93	1	0	0	0	0	0	0	0	1	14499	813	29	3		3	SLC12A5	20	44674597	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	1966	44674597	18350923	721	93950											
SLC13A3	64849	broad.mit.edu	37	chr20	45242166	45242166	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccggtgcaggttccactcctCaatggcgctggccatgatca	11	14	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45242166	T	T	45242166	3	4	93	1	0	0	0	0	1	0	0	0	14506	835	29	4	1546	4	SLC13A3	20	45242166	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	567569	45242166	17783354	722	93951											
SNAI1	6615	broad.mit.edu	37	chr20	48604461	48604461	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgccttcgctgaccgctcCaacctgcgggcccacctcca	9	20	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48604461	T	T	48604461	2	4	93	1	0	0	0	0	0	0	0	1	14940	581	21	4		4	SNAI1	20	48604461	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	3362295	48604461	14421059	723	93952											
MOCS3	27304	broad.mit.edu	37	chr20	49576222	49576222	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttgctctttgatgccctGagagggcatttccgctctat	10	10	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49576222	A	A	49576222	2	1	93	1	0	0	0	0	0	0	0	1	9786	1277	45	4		4	MOCS3	20	49576222	Silent	SNP	G	TCGA-35-4122-01A-01D-1105-08	971761	49576222	13449298	724	93953											
ATP9A	10079	broad.mit.edu	37	chr20	50235517	50235517	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggagtctcccgagatgacCagggcacaatcatgcttcct	11	12	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50235517	G	G	50235517	2	3	93	1	0	0	0	0	0	0	0	1	1202	581	21	4		4	ATP9A	20	50235517	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	659295	50235517	12790003	725	93954											
ZNF217	7764	broad.mit.edu	37	chr20	52192873	52192873	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacttggggctaaagtgctAgagtctatccctgaagtcag	11	8	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52192873	G	G	52192873	2	3	93	1	0	0	0	0	0	0	0	1	17898	407	15	5		5	ZNF217	20	52192873	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	1957356	52192873	10832647	726	93955											
PCK1	5105	broad.mit.edu	37	chr20	56138035	56138035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgagtgcctcggggaccCccaagcagggccctggcgca	15	15	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56138035	A	A	56138035	1	1	93	0	1	0	0	0	0	0	0	0	11675	638	22	2		2	PCK1	20	56138035	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	3945162	56138035	6887485	727	93956											
ZNF831	128611	broad.mit.edu	37	chr20	57829393	57829393	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagcacagaccctcttGccagggagaccttcatctgg	12	13	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57829393	C	C	57829393	3	2	93	1	0	0	0	0	1	0	0	0	18314	1310	46	4	4647	4	ZNF831	20	57829393	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1691358	57829393	5196127	728	93957											
TMPRSS15	5651	broad.mit.edu	37	chr21	19775744	19775744	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaataactgacactaaagTgtgtacattcagctgagagc	9	8	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19775744	C	C	19775744	1	2	93	0	1	0	0	0	0	0	0	0	16369	1711	59	5		5	TMPRSS15	21	19775744	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08		19775744	28354151	729	93958											
MX2	4600	broad.mit.edu	37	chr21	42769609	42769609	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaccactgaactcatcatGcatatccaagtgagccacgt	6	13	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42769609	T	T	42769609	3	4	93	1	0	0	0	0	1	0	0	0	10092	1319	46	3	1166	3	MX2	21	42769609	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	22993865	42769609	5360286	730	93959											
ZNF295	49854	broad.mit.edu	37	chr21	43412010	43412010	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccttgctctaggagagaaGagagcttagcattacagagg	12	7	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43412010	C	C	43412010	3	2	93	1	0	0	0	0	1	0	0	0	17953	942	33	4	1009	4	ZNF295	21	43412010	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	642401	43412010	4717885	731	93960											
RSPH1	89765	broad.mit.edu	37	chr21	43906398	43906398	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttttgttatgattctgttCctcagtaagtgtaaacaatc	7	7	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43906398	A	A	43906398	1	1	93	0	1	0	0	0	0	0	0	0	13813	870	30	3		3	RSPH1	21	43906398	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	494388	43906398	4223497	732	93961											
ITGB2	3689	broad.mit.edu	37	chr21	46326735	46326735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccggacacatgccttctgGgcagccctgacaccccagag	10	17	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46326735	T	T	46326735	1	4	93	0	1	0	0	0	0	0	0	0	7964	1247	43	2		2	ITGB2	21	46326735	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2420337	46326735	1803160	733	93962											
C21orf70	85395	broad.mit.edu	37	chr21	46363592	46363592	+	Intron	DEL	A	-	-													ttcgtccgtttttgttggggAcattaggactgggcgttcat							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46363592	-	-	46363592	6	5	93	0	1	1	0	1	0	0	0	0	2155	290	10	0		0	C21orf70	21	46363592	Intron	DEL	A	TCGA-35-4122-01A-01D-1105-08	36857	46363592	1766303	734	93963											
COL6A1	1291	broad.mit.edu	37	chr21	47418255	47418255	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttccgctgtgcgcccctCacagcctcccctctcaaatc	5	22	2	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47418255	T	T	47418255	1	4	93	0	1	0	0	0	0	0	0	0	3731	841	29	4		4	COL6A1	21	47418255	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1054663	47418255	711640	735	93964											
MYH9	4627	broad.mit.edu	37	chr22	36712613	36712613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccgatgaaggaggcgccCtgcctcttggtcttgtccag	12	13	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36712613	A	A	36712613	3	1	93	1	0	0	0	0	1	0	0	0	10136	680	24	2	4673	2	MYH9	22	36712613	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08		36712613	14591953	736	93965											
TCF20	6942	broad.mit.edu	37	chr22	42609585	42609585	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtggcctcttctcttgcgGcaggactagcattgagtctg	13	10	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42609585	C	C	42609585	3	2	93	1	0	0	0	0	1	0	0	0	15812	1203	42	4	4193	4	TCF20	22	42609585	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	5896972	42609585	8694981	737	93966											
FBLN1	2192	broad.mit.edu	37	chr22	45970490	45970490	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcacaccatctcccacacCgtcatctcgctgcctacctt	5	19	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45970490	A	A	45970490	2	1	93	1	0	0	0	0	0	0	0	1	5755	639	23	1		1	FBLN1	22	45970490	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	3360905	45970490	5334076	738	93967											
CERK	64781	broad.mit.edu	37	chr22	47116947	47116947	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtccttctgtcaaagaattCgtcagaatccacacaggtaa	7	11	3	2	rs116840095	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47116947	A	A	47116947	1	1	93	0	1	0	0	0	0	0	0	0	3297	899	31	3		3	CERK	22	47116947	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1146457	47116947	4187619	739	93968											
MIOX	55586	broad.mit.edu	37	chr22	50925883	50925883	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagacaaggccagcttcCggaactacacggtgagtacc	10	13	0	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50925883	A	A	50925883	2	1	93	1	0	0	0	0	0	0	0	1	9683	643	23	1		1	MIOX	22	50925883	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	3808936	50925883	378683	740	93969											
MIOX	55586	broad.mit.edu	37	chr22	50925985	50925985	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttccagggggtgccctgTgggaactcccacccccatca	11	16	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50925985	A	A	50925985	1	1	93	0	1	0	0	0	0	0	0	0	9683	1711	59	5		5	MIOX	22	50925985	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	102	50925985	378581	741	93970											
CRLF2	64109	broad.mit.edu	37	chrX	1317310	1317310	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaggacaccctccctcCcacctcgaaggcaggacacc	9	18	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1317310	T	T	1317310	1	4	93	0	1	0	0	0	0	0	0	0	3919	638	22	4		4	CRLF2	23	1317310	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08		1317310	153953250	742	93971											
CRLF2	64109	broad.mit.edu	37	chrX	1325341	1325341	+	RNA	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttacggtaataaaccatccAgcgacttgcggtgaaaacgg	10	10	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1325341	G	G	1325341	1	3	93	0	1	0	0	0	0	0	0	0	3919	188	7	5		5	CRLF2	23	1325341	RNA	SNP	A	TCGA-35-4122-01A-01D-1105-08	8031	1325341	153945219	743	93972											
CRLF2	64109	broad.mit.edu	37	chrX	1325460	1325460	+	RNA	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcctggagaaggtagttgGtgcactggtcataggcctca	13	9	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1325460	C	C	1325460	1	2	93	0	1	0	0	0	0	0	0	0	3919	1261	44	4		4	CRLF2	23	1325460	RNA	SNP	G	TCGA-35-4122-01A-01D-1105-08	119	1325460	153945100	744	93973											
CSF2RA	1438	broad.mit.edu	37	chrX	1413472	1413472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcgtgggtggtgagcgGtgactctggggtgaacgcac	20	7	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1413472	T	T	1413472	1	4	93	0	1	0	0	0	0	0	0	0	3968	1276	44	3		3	CSF2RA	23	1413472	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	88012	1413472	153857088	745	93974											
FANCB	2187	broad.mit.edu	37	chrX	14862910	14862910	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaactctgcccattatcaGataaacagaattcttaaaat	3	8	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14862910	C	C	14862910	1	2	93	0	1	0	0	0	0	0	0	0	5720	957	33	4		4	FANCB	23	14862910	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	13449438	14862910	140407650	746	93975											
RPGR	6103	broad.mit.edu	37	chrX	38129166	38129166	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttaggggatatcattttCaacacgtaagaacatgattt	7	5	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38129166	G	G	38129166	1	3	93	0	1	0	0	0	0	0	0	0	13659	841	29	4		4	RPGR	23	38129166	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	23266256	38129166	117141394	747	93976											
RBM3	5935	broad.mit.edu	37	chrX	48435356	48435356	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtgacgcatataattAcagtggtatatataatgcag	8	4	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48435356	G	G	48435356	1	3	93	0	1	0	0	0	0	0	0	0	13237	406	14	5		5	RBM3	23	48435356	Intron	SNP	A	TCGA-35-4122-01A-01D-1105-08	10306190	48435356	106835204	748	93977											
GATA1	2623	broad.mit.edu	37	chrX	48650964	48650964	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttcccattatataggaacGctgttctcatgattacagga	7	9	2	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48650964	C	C	48650964	1	2	93	0	1	0	0	0	0	0	0	0	6315	1102	38	4		4	GATA1	23	48650964	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	215608	48650964	106619596	749	93978											
CLCN5	1184	broad.mit.edu	37	chrX	49840388	49840388	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacaaagcttattctgatgaCcaaagaacagtttccgagat	8	8	1	4			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49840388	G	G	49840388	1	3	93	0	1	0	0	0	0	0	0	0	3497	522	18	4		4	CLCN5	23	49840388	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1189424	49840388	105430172	750	93979											
HUWE1	10075	broad.mit.edu	37	chrX	53585707	53585707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgtttcctgcgcttctctCgcctttcttccagctcctca	6	16	3	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53585707	A	A	53585707	3	1	93	1	0	0	0	0	1	0	0	0	7531	884	31	3	5159	3	HUWE1	23	53585707	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	3745319	53585707	101684853	751	93980											
FAAH2	158584	broad.mit.edu	37	chrX	57318978	57318978	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatatcaacagaatcaaggaCgtgaacccaatgatcaatgg	8	8	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57318978	T	T	57318978	2	4	93	1	0	0	0	0	0	0	0	1	5400	535	19	4		4	FAAH2	23	57318978	Silent	SNP	C	TCGA-35-4122-01A-01D-1105-08	3733271	57318978	97951582	752	93981											
EDA	1896	broad.mit.edu	37	chrX	68836236	68836237	+	Frame_Shift_Ins	INS	-	G	G													gccagggctgcgggtgtggcINSggggcccctgcccgggcggg							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68836237	G	G	68836236	7	5	93	1	0	1	1	0	0	0	0	0	4943	755	27	0	86	0	EDA	23	68836236	Frame_Shift_Ins	INS	-	TCGA-35-4122-01A-01D-1105-08	11517258	68836236	86434324	753	93982											
ZMYM3	9203	broad.mit.edu	37	chrX	70462880	70462880	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgagttcttgaacaaaagTcaggtagtaaaggtccgtga	12	5	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70462880	A	A	70462880	3	1	93	1	0	0	0	0	1	0	0	0	17827	1667	58	5	641	5	ZMYM3	23	70462880	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1626644	70462880	84807680	754	93983											
ATRX	546	broad.mit.edu	37	chrX	76763965	76763965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctgctggtagttagaaGgattcatgatcaaatttggg	11	5	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76763965	T	T	76763965	3	4	93	1	0	0	0	0	1	0	0	0	1212	1000	35	2	139	2	ATRX	23	76763965	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	6301085	76763965	78506595	755	93984											
KLHL4	56062	broad.mit.edu	37	chrX	86924398	86924398	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agactctggggcactaaattCagatcctttctccacacagc	7	13	3	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86924398	A	A	86924398	1	1	93	0	1	0	0	0	0	0	0	0	8462	841	29	3		3	KLHL4	23	86924398	3'UTR	SNP	C	TCGA-35-4122-01A-01D-1105-08	10160433	86924398	68346162	756	93985											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177451	89177451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagaaacgaccccatcattGgccacaaaacgggcaaagat	9	11	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177451	T	T	89177451	3	4	93	1	0	0	0	0	1	0	0	0	15950	1348	47	2	369	2	TGIF2LX	23	89177451	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	2253053	89177451	66093109	757	93986											
TAF7L	54457	broad.mit.edu	37	chrX	100531506	100531506	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactgaacatctcccgaagCatatcatattctactagttt	4	11	4	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100531506	T	T	100531506	3	4	93	1	0	0	0	0	1	0	0	0	15652	710	25	4	444	4	TAF7L	23	100531506	Missense_Mutation	SNP	C	TCGA-35-4122-01A-01D-1105-08	11354055	100531506	54739054	758	93987											
ARMCX1	51309	broad.mit.edu	37	chrX	100807894	100807894	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgtgctcgggttaagAgatttgtcccagctatacca	10	8	0	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100807894	G	G	100807894	1	3	93	0	1	0	0	0	0	0	0	0	963	319	11	5		5	ARMCX1	23	100807894	5'UTR	SNP	A	TCGA-35-4122-01A-01D-1105-08	276388	100807894	54462666	759	93988											
GLRA4	441509	broad.mit.edu	37	chrX	102962446	102962446	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggatgatatcttcctcctgGaattacaaggaagaaacggc	10	8	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102962446	T	T	102962446	1	4	93	0	1	0	0	0	0	0	0	0	6521	1189	41	3		3	GLRA4	23	102962446	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	2154552	102962446	52308114	760	93989											
NRK	203447	broad.mit.edu	37	chrX	105153552	105153552	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctcagttcaagcactgaTagagggactatcaagagact	11	8	3	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105153552	C	C	105153552	3	2	93	1	0	0	0	0	1	0	0	0	10750	1406	49	5	1969	5	NRK	23	105153552	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	2191106	105153552	50117008	761	93990											
MORC4	79710	broad.mit.edu	37	chrX	106221360	106221360	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttatgagtcggttgttatGatacatcattattccaaact	6	6	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106221360	A	A	106221360	3	1	93	1	0	0	0	0	1	0	0	0	9798	1290	45	4	1847	4	MORC4	23	106221360	Missense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08	1067808	106221360	49049200	762	93991											
GLUD2	2747	broad.mit.edu	37	chrX	120181414	120181414	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaaggggaggggacagcCgggcaggcaggaagctgcgg	21	10	0	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120181414	A	A	120181414	1	1	93	0	1	0	0	0	0	0	0	0	6541	667	23	1		1	GLUD2	23	120181414	5'Flank	SNP	C	TCGA-35-4122-01A-01D-1105-08	13960054	120181414	35089146	763	93992											
ODZ1	10178	broad.mit.edu	37	chrX	123787697	123787697	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttataaagcaatggttttTagcttttcaagaacagatat	6	4	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123787697	C	C	123787697	1	2	93	0	1	0	0	0	0	0	0	0	10929	1769	61	5		5	ODZ1	23	123787697	Intron	SNP	T	TCGA-35-4122-01A-01D-1105-08	3606283	123787697	31482863	764	93993											
OCRL	4952	broad.mit.edu	37	chrX	128694569	128694569	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatggccagtctccagaTagcgggttagaaccttggct	13	9	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128694569	A	A	128694569	3	1	93	1	0	0	0	0	1	0	0	0	10918	1403	49	5	799	5	OCRL	23	128694569	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	4906872	128694569	26575991	765	93994											
IGSF1	3547	broad.mit.edu	37	chrX	130412660	130412660	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaccagagggttaagttctTccacggggccagaggaaagt	14	9	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130412660	G	G	130412660	3	3	93	1	0	0	0	0	1	0	0	0	7666	1792	62	5	2230	5	IGSF1	23	130412660	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1718091	130412660	24857900	766	93995											
VGLL1	51442	broad.mit.edu	37	chrX	135638770	135638770	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctgcatattgttccagaTaaaaatgaaagctgctcaca	6	10	1	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135638770	C	C	135638770	1	2	93	0	1	0	0	0	0	0	0	0	17285	1421	49	5		5	VGLL1	23	135638770	3'UTR	SNP	T	TCGA-35-4122-01A-01D-1105-08	5226110	135638770	19631790	767	93996											
SPANXC	64663	broad.mit.edu	37	chrX	140357481	140357482	+	Intron	DNP	GG	AT	AT													caaagaacttaaagaaattcGgctcctacttttacttctat							TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	140357482	AT	AT	140357481	1	1	93	0	1	0	0	0	0	0	0	0	15103	1131	39	4		4	SPANXC	23	140357481	Intron	DNP	GG	TCGA-35-4122-01A-01D-1105-08	4718711	140357481	14913079	768	93997											
MAGEA12	4111	broad.mit.edu	37	chrX	151900357	151900357	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggctttgctgaagatcacAggaaagaagtcctggaaatt	12	6	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151900357	G	G	151900357	2	3	93	1	0	0	0	0	0	0	0	1	9254	175	7	5		5	MAGEA12	23	151900357	Silent	SNP	A	TCGA-35-4122-01A-01D-1105-08	11542876	151900357	3370203	769	93998											
TKTL1	8277	broad.mit.edu	37	chrX	153548987	153548987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtgggaaggacgcatgCtagaacttcagagcagttca	15	7	2	2			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153548987	T	T	153548987	1	4	93	0	1	0	0	0	0	0	0	0	16058	812	28	4		4	TKTL1	23	153548987	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	1648630	153548987	1721573	770	93999											
SPRY3	10251	broad.mit.edu	37	chrX	155004005	155004005	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgctgcaagtgcgtccccTgcacagcagctcgccctctc	11	18	1	0			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155004005	A	A	155004005	3	1	93	1	0	0	0	0	1	0	0	0	15225	1580	55	5	474	5	SPRY3	23	155004005	Missense_Mutation	SNP	T	TCGA-35-4122-01A-01D-1105-08	1455018	155004005	266555	771	94000											
VAMP7	6845	broad.mit.edu	37	chrX	155169516	155169516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctctaagaaattaggtaCtagaattatttctcaatgat	5	5	2	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155169516	A	A	155169516	1	1	93	0	1	0	0	0	0	0	0	0	17244	580	20	3		3	VAMP7	23	155169516	Intron	SNP	C	TCGA-35-4122-01A-01D-1105-08	165511	155169516	101044	772	94001											
IL9R	3581	broad.mit.edu	37	chrX	155227421	155227421	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttggggatgcctcagactTgtgatgggactgggcagatg	18	6	1	3			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155227421	C	C	155227421	1	2	93	0	1	0	0	0	0	0	0	0	7778	1827	63	5		5	IL9R	23	155227421	5'UTR	SNP	T	TCGA-35-4122-01A-01D-1105-08	57905	155227421	43139	773	94002											
PCDH11Y	83259	broad.mit.edu	37	chrY	4925348	4925348	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaagatacgttttctgataGaagatataaatgataatgca	7	3	1	5			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4925348	T	T	4925348	4	4	93	1	0	0	0	0	0	1	0	0	11603	943	33	3	522	3	PCDH11Y	24	4925348	Nonsense_Mutation	SNP	G	TCGA-35-4122-01A-01D-1105-08		4925348	54448218	774	94003											
PCDH11Y	83259	broad.mit.edu	37	chrY	5075524	5075524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttcttgttcactttctgGtaaatgaggccgccaaactc	7	11	3	1			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5075524	T	T	5075524	1	4	93	0	1	0	0	0	0	0	0	0	11603	1276	44	3		3	PCDH11Y	24	5075524	Intron	SNP	G	TCGA-35-4122-01A-01D-1105-08	150176	5075524	54298042	775	94004											
KIAA1751	85452	broad.mit.edu	37	chr1	1897854	1897854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagcccagagatctcggGctcagctaacgtttcctcct	8	15	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1897854	T	T	1897854	3	4	94	1	0	0	0	0	1	0	0	0	8326	1203	42	3	959	3	KIAA1751	1	1897854	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		1897854	247352767	1	94005											
TPRG1L	127262	broad.mit.edu	37	chr1	3542012	3542012	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagcatcgagcaggcagtgGaggagatccgcgtggtggtg	19	8	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3542012	C	C	3542012	3	2	94	1	0	0	0	0	1	0	0	0	16543	1175	41	4	232	4	TPRG1L	1	3542012	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1644158	3542012	245708609	2	94006											
NPHP4	261734	broad.mit.edu	37	chr1	5948762	5948762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggcaccattttcctccCaaatcattatcaaaatggcc	4	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5948762	A	A	5948762	1	1	94	0	1	0	0	0	0	0	0	0	10676	609	21	2		2	NPHP4	1	5948762	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2406750	5948762	243301859	3	94007											
CHD5	26038	broad.mit.edu	37	chr1	6185922	6185922	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagctcatcctgccactctgCagggggccagacagaggggc	15	13	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6185922	G	G	6185922	1	3	94	0	1	0	0	0	0	0	0	0	3359	725	25	4		4	CHD5	1	6185922	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	237160	6185922	243064699	4	94008											
MTOR	2475	broad.mit.edu	37	chr1	11270888	11270888	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccttgacaattctgcagaTgagcacatcatagcgctgat	8	11	2	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11270888	C	C	11270888	3	2	94	1	0	0	0	0	1	0	0	0	10048	1464	51	5	4152	5	MTOR	1	11270888	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	5084966	11270888	237979733	5	94009											
PTCHD2	57540	broad.mit.edu	37	chr1	11574361	11574361	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtgaagtggacagctccTgatactcctctacatgttca	9	11	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11574361	A	A	11574361	1	1	94	0	1	0	0	0	0	0	0	0	12839	1595	55	5		5	PTCHD2	1	11574361	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	303473	11574361	237676260	6	94010											
C1orf187	374946	broad.mit.edu	37	chr1	11769250	11769250	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgcctcctagtttgcAgcataaaacgtgggttctac	9	12	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11769250	T	T	11769250	1	4	94	0	1	0	0	0	0	0	0	0	2041	203	7	5		5	C1orf187	1	11769250	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	194889	11769250	237481371	7	94011											
PRAMEF1	65121	broad.mit.edu	37	chr1	12854687	12854687	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcagaccacagcatagccTtgttctgtaacagcaaacat	7	11	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12854687	A	A	12854687	1	1	94	0	1	0	0	0	0	0	0	0	12526	1624	56	5		5	PRAMEF1	1	12854687	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	1085437	12854687	236395934	8	94012											
PRAMEF2	65122	broad.mit.edu	37	chr1	12919588	12919588	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggatttgcgggatgttgatGagaatttctgggccagatgg	16	4	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12919588	T	T	12919588	4	4	94	1	0	0	0	0	0	1	0	0	12537	1291	45	3	334	3	PRAMEF2	1	12919588	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	64901	12919588	236331033	9	94013											
NBPF1	55672	broad.mit.edu	37	chr1	16902974	16902974	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgaaccaggactttatatTgcctaaggtgagacggtaga	12	6	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16902974	A	A	16902974	3	1	94	1	0	0	0	0	1	0	0	0	10286	1812	63	5	1561	5	NBPF1	1	16902974	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	3983386	16902974	232347647	10	94014											
PADI6	353238	broad.mit.edu	37	chr1	17723578	17723578	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctacaggaagggaagccAaaaccatcgaccaacttctg	8	12	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17723578	G	G	17723578	3	3	94	1	0	0	0	0	1	0	0	0	11475	131	5	5	1685	5	PADI6	1	17723578	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	820604	17723578	231527043	11	94015											
PADI6	353238	broad.mit.edu	37	chr1	17723626	17723626	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagcctgaagaagcagaatGaatacgtggaggtaggacca	13	6	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17723626	C	C	17723626	3	2	94	1	0	0	0	0	1	0	0	0	11475	1291	45	4	1733	4	PADI6	1	17723626	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	48	17723626	231526995	12	94016											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17983154	17983154	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgacacagccccttccacctGctcgctggcctgcaggatgg	11	17	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17983154	A	A	17983154	2	1	94	1	0	0	0	0	0	0	0	1	897	1306	46	4		4	ARHGEF10L	1	17983154	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	259528	17983154	231267467	13	94017											
UBR4	23352	broad.mit.edu	37	chr1	19444381	19444381	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccaggtaatagccatcaAactccactaagccagacaaa	5	13	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19444381	C	C	19444381	3	2	94	1	0	0	0	0	1	0	0	0	17030	14	1	5	5126	5	UBR4	1	19444381	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	1461227	19444381	229806240	14	94018											
CAPZB	832	broad.mit.edu	37	chr1	19665987	19665987	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctaagaaaggaatctaacGagtgcacggcgtgtctggtt	12	7	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19665987	T	T	19665987	1	4	94	0	1	0	0	0	0	0	0	0	2669	1073	37	3		3	CAPZB	1	19665987	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	221606	19665987	229584634	15	94019											
TMCO4	255104	broad.mit.edu	37	chr1	20067529	20067529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaccaggaccactcaccCttgtgtggaagacaagaggc	12	12	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20067529	A	A	20067529	1	1	94	0	1	0	0	0	0	0	0	0	16121	696	24	2		2	TMCO4	1	20067529	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	401542	20067529	229183092	16	94020											
ALPL	249	broad.mit.edu	37	chr1	21902329	21902329	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcaggcagcttgacctcCtcggaagacactctgaccgt	11	14	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21902329	A	A	21902329	2	1	94	1	0	0	0	0	0	0	0	1	547	668	24	2		2	ALPL	1	21902329	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	1834800	21902329	227348292	17	94021											
RHCE	6006	broad.mit.edu	37	chr1	25725549	25725549	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttggacaagttgttactgActatgttcatggggatgcct	11	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25725549	C	C	25725549	1	2	94	0	1	0	0	0	0	0	0	0	13434	290	10	5		5	RHCE	1	25725549	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	3823220	25725549	223525072	18	94022											
CSMD2	114784	broad.mit.edu	37	chr1	33992844	33992844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgttgatgggtctccCactgggccggacctctgctg	15	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33992844	A	A	33992844	3	1	94	1	0	0	0	0	1	0	0	0	3979	594	21	2	733	2	CSMD2	1	33992844	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	8267295	33992844	215257777	19	94023											
CSMD2	114784	broad.mit.edu	37	chr1	34071500	34071500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcccagacataggaagcGgcgacgggaggagttgagtt	16	7	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34071500	T	T	34071500	2	4	94	1	0	0	0	0	0	0	0	1	3979	1103	39	1		1	CSMD2	1	34071500	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	78656	34071500	215179121	20	94024											
C1orf94	84970	broad.mit.edu	37	chr1	34663245	34663245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcccagttcccactgaagtCcactgagacatccaaggtcc	8	15	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34663245	A	A	34663245	3	1	94	1	0	0	0	0	1	0	0	0	2093	855	30	3	746	3	C1orf94	1	34663245	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	591745	34663245	214587376	21	94025											
C1orf94	84970	broad.mit.edu	37	chr1	34684274	34684274	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcatcatggcatccaccctCcctctcttccaggttcggct	6	18	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34684274	A	A	34684274	1	1	94	0	1	0	0	0	0	0	0	0	2093	870	30	3		3	C1orf94	1	34684274	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	21029	34684274	214566347	22	94026											
ZMYM4	9202	broad.mit.edu	37	chr1	35847069	35847069	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctttattggggcaggagtCtaatacgtttgtgcttaaag	11	6	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35847069	A	A	35847069	1	1	94	0	1	0	0	0	0	0	0	0	17828	928	32	3		3	ZMYM4	1	35847069	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1162795	35847069	213403552	23	94027											
PTPRF	5792	broad.mit.edu	37	chr1	44072370	44072370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccaccttgtagggtctGggagaccaggcccagggtaa	15	10	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44072370	T	T	44072370	1	4	94	0	1	0	0	0	0	0	0	0	12909	1363	47	2		2	PTPRF	1	44072370	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	8225301	44072370	205178251	24	94028											
NASP	4678	broad.mit.edu	37	chr1	46081054	46081054	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattgaggaactaaaggaaCtgctacccgaaattagagag	10	6	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46081054	G	G	46081054	3	3	94	1	0	0	0	0	1	0	0	0	10266	564	20	4	2052	4	NASP	1	46081054	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2008684	46081054	203169567	25	94029											
TMEM69	51249	broad.mit.edu	37	chr1	46159007	46159007	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatcatttccagcgtatatGagcaagacacagtgctatca	7	10	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46159007	C	C	46159007	3	2	94	1	0	0	0	0	1	0	0	0	16321	1290	45	4	180	4	TMEM69	1	46159007	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	77953	46159007	203091614	26	94030											
DMBX1	127343	broad.mit.edu	37	chr1	46978111	46978112	+	Missense_Mutation	DNP	GG	TT	TT													cacaagcatcgagaacctgcGgctccgggccaagcagcacg							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	46978112	TT	TT	46978111	3	4	94	1	0	0	0	0	1	0	0	0	4618	1116	39	1	1108	1	DMBX1	1	46978111	Missense_Mutation	DNP	GG	TCGA-35-4123-01A-01D-1105-08	819104	46978111	202272510	27	94031											
LRP8	7804	broad.mit.edu	37	chr1	53716632	53716632	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactccacttttactaccctTtgctcctcaggctctgtttc	4	16	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53716632	C	C	53716632	1	2	94	0	1	0	0	0	0	0	0	0	9050	1856	64	5		5	LRP8	1	53716632	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	6738521	53716632	195533989	28	94032											
C8B	732	broad.mit.edu	37	chr1	57420289	57420289	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttatatcagttctctcaTtctctatccgccagaattcc	4	12	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57420289	C	C	57420289	1	2	94	0	1	0	0	0	0	0	0	0	2442	1508	52	5		5	C8B	1	57420289	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	3703657	57420289	191830332	29	94033											
USP1	7398	broad.mit.edu	37	chr1	62913035	62913035	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaacaaattggttttgagCtagtggagaaattatttcaa	9	3	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62913035	G	G	62913035	3	3	94	1	0	0	0	0	1	0	0	0	17166	796	28	4	1295	4	USP1	1	62913035	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	5492746	62913035	186337586	30	94034											
LRRC7	57554	broad.mit.edu	37	chr1	70446171	70446171	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctaccatgttgtttaatAtttgttatacgtttgttgta	6	4	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70446171	G	G	70446171	1	3	94	0	1	0	0	0	0	0	0	0	9107	464	16	5		5	LRRC7	1	70446171	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	7533136	70446171	178804450	31	94035											
C1orf173	127254	broad.mit.edu	37	chr1	75065534	75065534	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgactgcggtattccaTtcatttgaacatcagcctgt	9	9	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75065534	C	C	75065534	3	2	94	1	0	0	0	0	1	0	0	0	2034	1493	52	5	3037	5	C1orf173	1	75065534	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	4619363	75065534	174185087	32	94036											
ACADM	34	broad.mit.edu	37	chr1	76194211	76194211	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgactttaaacttatAcatatgaagctttatatgtt	4	5	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76194211	G	G	76194211	1	3	94	0	1	0	0	0	0	0	0	0	113	406	14	5		5	ACADM	1	76194211	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1128677	76194211	173056410	33	94037											
COL24A1	255631	broad.mit.edu	37	chr1	86289114	86289114	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtgatccatattctacagTgataaatgataatttgaatt	6	4	1	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86289114	A	A	86289114	1	1	94	0	1	0	0	0	0	0	0	0	3715	1711	59	5		5	COL24A1	1	86289114	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	10094903	86289114	162961507	34	94038											
HFM1	164045	broad.mit.edu	37	chr1	91844775	91844775	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcttttattggtgccactgTaacaatataaaatatttact	6	6	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91844775	A	A	91844775	1	1	94	0	1	0	0	0	0	0	0	0	7150	1653	57	5		5	HFM1	1	91844775	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	5555661	91844775	157405846	35	94039											
SLC44A3	126969	broad.mit.edu	37	chr1	95360466	95360466	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggaacagaactccaggcCattgtgagatagatacccat	11	9	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95360466	T	T	95360466	2	4	94	1	0	0	0	0	0	0	0	1	14751	581	21	4		4	SLC44A3	1	95360466	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	3515691	95360466	153890155	36	94040											
HIAT1	64645	broad.mit.edu	37	chr1	100533603	100533603	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatcttggacgagtatatgGggacagcttggtggtggtct	15	5	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100533603	A	A	100533603	3	1	94	1	0	0	0	0	1	0	0	0	7164	1232	43	4	579	4	HIAT1	1	100533603	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	5173137	100533603	148717018	37	94041											
CDC14A	8556	broad.mit.edu	37	chr1	100964529	100964529	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagttctctagggaacttgaAtgctgcaacagatgatccag	10	9	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100964529	G	G	100964529	3	3	94	1	0	0	0	0	1	0	0	0	3086	101	4	5	1539	5	CDC14A	1	100964529	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	430926	100964529	148286092	38	94042											
COL11A1	1301	broad.mit.edu	37	chr1	103354273	103354273	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattgtcaaagggaaaagtActtacagtagagcctttgtt	9	5	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103354273	G	G	103354273	1	3	94	0	1	0	0	0	0	0	0	0	3699	406	14	5		5	COL11A1	1	103354273	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2389744	103354273	145896348	39	94043											
COL11A1	1301	broad.mit.edu	37	chr1	103400227	103400227	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtatttaagaataaccaAgtaaaaagtagactgaatgc	8	4	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103400227	G	G	103400227	1	3	94	0	1	0	0	0	0	0	0	0	3699	87	3	5		5	COL11A1	1	103400227	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	45954	103400227	145850394	40	94044											
COL11A1	1301	broad.mit.edu	37	chr1	103444316	103444317	+	Intron	INS	-	A	A													acctgaagtgccctggcaccINSaagaaaagaaaagaaaaatc							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103444317	A	A	103444316	6	5	94	0	1	1	1	0	0	0	0	0	3699	609	21	0		0	COL11A1	1	103444316	Intron	INS	-	TCGA-35-4123-01A-01D-1105-08	44089	103444316	145806305	41	94045											
GSTM1	2944	broad.mit.edu	37	chr1	110231399	110231399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggttttgggggaaagtgcaAcgtgtctctgactgcatctc	13	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110231399	T	T	110231399	1	4	94	0	1	0	0	0	0	0	0	0	6903	58	2	5		5	GSTM1	1	110231399	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	6787083	110231399	139019222	42	94046											
EPS8L3	79574	broad.mit.edu	37	chr1	110293311	110293311	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgacagcctccagccGggacaggattcgtggggcct	13	14	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110293311	A	A	110293311	3	1	94	1	0	0	0	0	1	0	0	0	5239	1115	39	4	48	4	EPS8L3	1	110293311	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	61912	110293311	138957310	43	94047											
SLC6A17	388662	broad.mit.edu	37	chr1	110717279	110717279	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacccaagatgagcacagccCctcccagctgcccaccctca	6	20	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110717279	G	G	110717279	1	3	94	0	1	0	0	0	0	0	0	0	14794	638	22	4		4	SLC6A17	1	110717279	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	423968	110717279	138533342	44	94048											
RBM15	64783	broad.mit.edu	37	chr1	110882449	110882449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgggcgggggcgaatcgcGcagcagctcccggggtggag	20	11	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110882449	T	T	110882449	3	4	94	1	0	0	0	0	1	0	0	0	13224	1087	38	3	424	3	RBM15	1	110882449	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	165170	110882449	138368172	45	94049											
NRAS	4893	broad.mit.edu	37	chr1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggcactgtactcttcttGtccagctgtatccagtatgt	8	11	2	0	rs121913254		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115256530	T	T	115256530	3	4	94	1	0	0	0	0	1	0	0	0	10735	1386	48	3	400	3	NRAS	1	115256530	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	4374081	115256530	133994091	46	94050											
CD101	9398	broad.mit.edu	37	chr1	117561104	117561104	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagtagaagtttatgacAgaaattccctatacaacaac	7	7	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117561104	C	C	117561104	2	2	94	1	0	0	0	0	0	0	0	1	2992	180	7	5		5	CD101	1	117561104	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	2304574	117561104	131689517	47	94051											
ACP6	51205	broad.mit.edu	37	chr1	147124193	147124193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgatgaactcctcttcCccatacacttggatgtctga	8	13	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147124193	A	A	147124193	1	1	94	0	1	0	0	0	0	0	0	0	165	638	22	2		2	ACP6	1	147124193	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	29563089	147124193	102126428	48	94052											
ENSA	2029	broad.mit.edu	37	chr1	150601933	150601933	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagggttctcttcttctTgtttctgggacatggcggga	13	10	4	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150601933	C	C	150601933	3	2	94	1	0	0	0	0	1	0	0	0	5178	1812	63	5	607	5	ENSA	1	150601933	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	3477740	150601933	98648688	49	94053											
THEM5	284486	broad.mit.edu	37	chr1	151825794	151825794	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcactttctctttgccaaatCaaatagctcctccgaacact	4	14	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151825794	A	A	151825794	1	1	94	0	1	0	0	0	0	0	0	0	15982	841	29	3		3	THEM5	1	151825794	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1223861	151825794	97424827	50	94054											
FLG	2312	broad.mit.edu	37	chr1	152284188	152284188	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccagtgtccactgtctctGactgcagatgaagcttgtct	9	13	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152284188	T	T	152284188	2	4	94	1	0	0	0	0	0	0	0	1	5979	1277	45	3		3	FLG	1	152284188	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	458394	152284188	96966433	51	94055											
SEMA4A	64218	broad.mit.edu	37	chr1	156130171	156130171	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccccagtcagaggcaggTctgtggagggcagaggaacc	16	11	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156130171	G	G	156130171	1	3	94	0	1	0	0	0	0	0	0	0	14144	1682	58	5		5	SEMA4A	1	156130171	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	3845983	156130171	93120450	52	94056											
BCAN	63827	broad.mit.edu	37	chr1	156617579	156617579	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctggacatgcagggcttTttgcctctgggggatgaggc	17	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156617579	C	C	156617579	1	2	94	0	1	0	0	0	0	0	0	0	1350	1856	64	5		5	BCAN	1	156617579	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	487408	156617579	92633042	53	94057											
OR6Y1	391112	broad.mit.edu	37	chr1	158517140	158517140	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atggaatagaagagaattacGacggtcaggtgggaggcaca	15	5	1	2	rs114824139	byFrequency;by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158517140	C	C	158517140	2	2	94	1	0	0	0	0	0	0	0	1	11307	1045	37	4		4	OR6Y1	1	158517140	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	1899561	158517140	90733481	54	94058											
SPTA1	6708	broad.mit.edu	37	chr1	158636191	158636191	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcctttcccataatcctcaGaggtgacttgccactcaaca	7	14	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158636191	C	C	158636191	3	2	94	1	0	0	0	0	1	0	0	0	15234	942	33	4	5272	4	SPTA1	1	158636191	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	119051	158636191	90614430	55	94059											
SPTA1	6708	broad.mit.edu	37	chr1	158656379	158656380	+	5'UTR	DNP	GG	TC	TC													gagagagaaataattcaaatGgaactgtccagtcgaattca							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	158656380	TC	TC	158656379	1	4	94	0	1	0	0	0	0	0	0	0	15234	1363	47	2		2	SPTA1	1	158656379	5'UTR	DNP	GG	TCGA-35-4123-01A-01D-1105-08	20188	158656379	90594242	56	94060											
OR6N2	81442	broad.mit.edu	37	chr1	158746816	158746816	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgataagaattatgaaagCattaatggcaaagtccacca	8	6	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158746816	T	T	158746816	3	4	94	1	0	0	0	0	1	0	0	0	11301	710	25	4	346	4	OR6N2	1	158746816	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	90437	158746816	90503805	57	94061											
PYHIN1	149628	broad.mit.edu	37	chr1	158913507	158913507	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatcttgtttttaatctGtcacaagagactttcctata	5	8	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158913507	C	C	158913507	1	2	94	0	1	0	0	0	0	0	0	0	12973	1392	48	4		4	PYHIN1	1	158913507	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	166691	158913507	90337114	58	94062											
ATP1A4	480	broad.mit.edu	37	chr1	160136342	160136342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgaccctcacagccaagCgcatggcgcggaagaactgc	12	15	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160136342	A	A	160136342	3	1	94	1	0	0	0	0	1	0	0	0	1135	768	27	3	1102	3	ATP1A4	1	160136342	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1222835	160136342	89114279	59	94063											
ATP1A4	480	broad.mit.edu	37	chr1	160136563	160136563	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggagggatttgggggatGtgatgagtgagctgagagag	21	1	0	5			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160136563	A	A	160136563	1	1	94	0	1	0	0	0	0	0	0	0	1135	1392	48	4		4	ATP1A4	1	160136563	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	221	160136563	89114058	60	94064											
NCSTN	23385	broad.mit.edu	37	chr1	160321647	160321647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggcacaaaaagagctgGtaggccccgctctagcatat	12	11	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160321647	T	T	160321647	1	4	94	0	1	0	0	0	0	0	0	0	10336	1276	44	3		3	NCSTN	1	160321647	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	185084	160321647	88928974	61	94065											
F11R	50848	broad.mit.edu	37	chr1	161004746	161004746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaagaactgaaaaagctGgggctctgttctgccctttt	11	8	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161004746	T	T	161004746	1	4	94	0	1	0	0	0	0	0	0	0	5381	1363	47	2		2	F11R	1	161004746	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	683099	161004746	88245875	62	94066											
UFC1	51506	broad.mit.edu	37	chr1	161123809	161123809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcggatgaagccacgcgaCgtgttgtgtctgagatcccg	15	10	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161123809	T	T	161123809	3	4	94	1	0	0	0	0	1	0	0	0	17060	536	19	4	24	4	UFC1	1	161123809	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	119063	161123809	88126812	63	94067											
DDR2	4921	broad.mit.edu	37	chr1	162748381	162748381	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaaatagggcaagttcacTacagcaagtgatgtgtgggc	12	7	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162748381	A	A	162748381	2	1	94	1	0	0	0	0	0	0	0	1	4370	1509	53	5		5	DDR2	1	162748381	Silent	SNP	T	TCGA-35-4123-01A-01D-1105-08	1624572	162748381	86502240	64	94068											
GPA33	10223	broad.mit.edu	37	chr1	167038228	167038228	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catcagcgagacagaacactCgtaggtgccgttgtcagcca	11	12	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167038228	T	T	167038228	3	4	94	1	0	0	0	0	1	0	0	0	6651	893	31	4	633	4	GPA33	1	167038228	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	4289847	167038228	82212393	65	94069											
SELL	6402	broad.mit.edu	37	chr1	169660891	169660891	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaggatctcatgatttttAgtattccaagaattttcttt	5	5	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169660891	T	T	169660891	1	4	94	0	1	0	0	0	0	0	0	0	14129	435	15	5		5	SELL	1	169660891	3'UTR	SNP	A	TCGA-35-4123-01A-01D-1105-08	2622663	169660891	79589730	66	94070											
GORAB	92344	broad.mit.edu	37	chr1	170508612	170508612	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcattgaaagtcagccaaAggaactgggacttgagaatt	13	6	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170508612	G	G	170508612	3	3	94	1	0	0	0	0	1	0	0	0	6638	72	3	5	404	5	GORAB	1	170508612	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	847721	170508612	78742009	67	94071											
GORAB	92344	broad.mit.edu	37	chr1	170513848	170513848	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acatacctgattttctagatCcaaaagaactcaggcagaga	7	9	2	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170513848	T	T	170513848	3	4	94	1	0	0	0	0	1	0	0	0	6638	855	30	4	613	4	GORAB	1	170513848	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	5236	170513848	78736773	68	94072											
PAPPA2	60676	broad.mit.edu	37	chr1	176809253	176809253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgggaggagtggcagaGtcaaacaagacataataagg	16	4	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176809253	T	T	176809253	1	4	94	0	1	0	0	0	0	0	0	0	11527	1044	36	3		3	PAPPA2	1	176809253	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	6295405	176809253	72441368	69	94073											
ASTN1	460	broad.mit.edu	37	chr1	177001424	177001424	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggttttctagattagaaaaCagctcccatcatctcaggaa	7	9	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177001424	G	G	177001424	1	3	94	0	1	0	0	0	0	0	0	0	1068	493	17	4		4	ASTN1	1	177001424	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	192171	177001424	72249197	70	94074											
CEP350	9857	broad.mit.edu	37	chr1	179988994	179988994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctttttttgttgcagtGcatcctcattactcttataa	5	9	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179988994	T	T	179988994	1	4	94	0	1	0	0	0	0	0	0	0	3284	1334	46	3		3	CEP350	1	179988994	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2987570	179988994	69261627	71	94075											
NEK7	140609	broad.mit.edu	37	chr1	198225496	198225496	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaagaagagtgtgtgcGctaaatgcatgttacttctt	12	5	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198225496	C	C	198225496	1	2	94	0	1	0	0	0	0	0	0	0	10424	1102	38	4		4	NEK7	1	198225496	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	18236502	198225496	51025125	72	94076											
PTPRC	5788	broad.mit.edu	37	chr1	198665956	198665956	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgacttctcagagacCacaacttctcttagtccaga	6	11	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198665956	A	A	198665956	2	1	94	1	0	0	0	0	0	0	0	1	12905	581	21	2		2	PTPRC	1	198665956	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	440460	198665956	50584665	73	94077											
CACNA1S	779	broad.mit.edu	37	chr1	201043678	201043678	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcagccttggccttctgGgcagaagtcaggctctccgc	11	15	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201043678	T	T	201043678	2	4	94	1	0	0	0	0	0	0	0	1	2573	1219	43	2		2	CACNA1S	1	201043678	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	2377722	201043678	48206943	74	94078											
CYB5R1	51706	broad.mit.edu	37	chr1	202934681	202934681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtcactggtttctgagCcccatgttgactaaacctcc	8	12	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202934681	A	A	202934681	1	1	94	0	1	0	0	0	0	0	0	0	4159	754	26	3		3	CYB5R1	1	202934681	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1891003	202934681	46315940	75	94079											
ETNK2	55224	broad.mit.edu	37	chr1	204103601	204103601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctgggctcaaccaaggCtctcccttttctccacgtcc	6	19	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204103601	A	A	204103601	1	1	94	0	1	0	0	0	0	0	0	0	5316	812	28	3		3	ETNK2	1	204103601	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1168920	204103601	45147020	76	94080											
LRRN2	10446	broad.mit.edu	37	chr1	204588373	204588373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccgcctgggcacccgggCcagctggttgtcatagaagg	15	13	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204588373	A	A	204588373	3	1	94	1	0	0	0	0	1	0	0	0	9122	739	26	3	1397	3	LRRN2	1	204588373	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	484772	204588373	44662248	77	94081											
CDK18	5129	broad.mit.edu	37	chr1	205495790	205495790	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcgagccagggacctgtcCcactagtgggcgtgggccct	15	14	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205495790	T	T	205495790	1	4	94	0	1	0	0	0	0	0	0	0	3164	638	22	4		4	CDK18	1	205495790	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	907417	205495790	43754831	78	94082											
KCNH1	3756	broad.mit.edu	37	chr1	211093022	211093022	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaaagatcttctcaatGtctgtggatggggcgatgtt	12	7	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211093022	T	T	211093022	3	4	94	1	0	0	0	0	1	0	0	0	8101	1368	48	3	1567	3	KCNH1	1	211093022	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	5597232	211093022	38157599	79	94083											
CAPN2	824	broad.mit.edu	37	chr1	223949390	223949390	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcagaggagcaaaaaaactCcaagagtttttggacttcac	9	8	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223949390	A	A	223949390	1	1	94	0	1	0	0	0	0	0	0	0	2653	870	30	3		3	CAPN2	1	223949390	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	12856368	223949390	25301231	80	94084											
OBSCN	84033	broad.mit.edu	37	chr1	228482094	228482094	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcgggcaggagaggacCtcagccacactcactgtcag	14	12	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228482094	T	T	228482094	2	4	94	1	0	0	0	0	0	0	0	1	10907	668	24	4		4	OBSCN	1	228482094	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	4532704	228482094	20768527	81	94085											
TTC13	79573	broad.mit.edu	37	chr1	231052046	231052046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttcgttttagtattaaaCtgctttcagggaaaaagaaa	7	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231052046	A	A	231052046	3	1	94	1	0	0	0	0	1	0	0	0	16806	579	20	3	620	3	TTC13	1	231052046	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2569952	231052046	18198575	82	94086											
NID1	4811	broad.mit.edu	37	chr1	236195839	236195839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggctgtgtaggagcgccCgtggttcattactacgtaag	14	8	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236195839	T	T	236195839	3	4	94	1	0	0	0	0	1	0	0	0	10509	652	23	4	2404	4	NID1	1	236195839	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	5143793	236195839	13054782	83	94087											
EDARADD	128178	broad.mit.edu	37	chr1	236645937	236645937	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggagcgtggagacccctcCaggcacttctagagctcttc	12	14	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236645937	T	T	236645937	2	4	94	1	0	0	0	0	0	0	0	1	4946	581	21	4		4	EDARADD	1	236645937	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	450098	236645937	12604684	84	94088											
EDARADD	128178	broad.mit.edu	37	chr1	236646542	236646542	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaggttgatctcttcacCtcagaaggtctcttcagagc	10	10	5	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236646542	A	A	236646542	1	1	94	0	1	0	0	0	0	0	0	0	4946	696	24	2		2	EDARADD	1	236646542	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	605	236646542	12604079	85	94089											
RYR2	6262	broad.mit.edu	37	chr1	237893689	237893689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggctctaagatgaaagaGggtctaggcttggtgcagca	16	6	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237893689	T	T	237893689	1	4	94	0	1	0	0	0	0	0	0	0	13880	1015	35	2		2	RYR2	1	237893689	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1247147	237893689	11356932	86	94090											
RYR2	6262	broad.mit.edu	37	chr1	237895400	237895400	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcactaagagagttgatcctCtacatcagctgatccttctg	8	11	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237895400	T	T	237895400	2	4	94	1	0	0	0	0	0	0	0	1	13880	912	32	4		4	RYR2	1	237895400	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	1711	237895400	11355221	87	94091											
FMN2	56776	broad.mit.edu	37	chr1	240458238	240458238	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatatgtacacagtacatgTctatgtgcacatataggctc	7	8	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240458238	A	A	240458238	1	1	94	0	1	0	0	0	0	0	0	0	6008	1682	58	5		5	FMN2	1	240458238	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	2562838	240458238	8792383	88	94092											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242161853	242161853	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtcatggtcagctcctGcgggaccaggaacttggttt	14	10	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242161853	A	A	242161853	4	1	94	1	0	0	0	0	0	1	0	0	9325	1328	46	4	267	4	MAP1LC3C	1	242161853	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1703615	242161853	7088768	89	94093											
AHCTF1	25909	broad.mit.edu	37	chr1	247018989	247018989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaactcttcactcaaaaCacaaaaatggaataatcctg	4	9	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247018989	A	A	247018989	1	1	94	0	1	0	0	0	0	0	0	0	408	493	17	3		3	AHCTF1	1	247018989	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4857136	247018989	2231632	90	94094											
ZNF496	84838	broad.mit.edu	37	chr1	247492178	247492179	+	Intron	DNP	CA	AG	AG													cagtgcttgagctgcaatccCagagacagcttttcagggct							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	247492179	AG	AG	247492178	1	1	94	0	1	0	0	0	0	0	0	0	18072	609	21	2		2	ZNF496	1	247492178	Intron	DNP	CA	TCGA-35-4123-01A-01D-1105-08	473189	247492178	1758443	91	94095											
NLRP3	114548	broad.mit.edu	37	chr1	247588096	247588096	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttcctttccagtttgCtgcagccccggggagggagc	12	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247588096	T	T	247588096	2	4	94	1	0	0	0	0	0	0	0	1	10573	796	28	4		4	NLRP3	1	247588096	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	95918	247588096	1662525	92	94096											
OR2L8	391190	broad.mit.edu	37	chr1	248112520	248112520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcatctatggcctatgatCgttacattgctatttgcttt	8	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112520	T	T	248112520	3	4	94	1	0	0	0	0	1	0	0	0	11103	884	31	4	363	4	OR2L8	1	248112520	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	524424	248112520	1138101	93	94097											
OR2T33	391195	broad.mit.edu	37	chr1	248436623	248436623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgtgtgcaccacaatatGggaagctcagggtaacaaca	10	10	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436623	T	T	248436623	3	4	94	1	0	0	0	0	1	0	0	0	11118	1348	47	2	471	2	OR2T33	1	248436623	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	324103	248436623	813998	94	94098											
SNTG2	54221	broad.mit.edu	37	chr2	1263060	1263060	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattgaggtggacacacatgCagtcacactattgtaaattt	8	7	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1263060	T	T	1263060	1	4	94	0	1	0	0	0	0	0	0	0	14989	725	25	4		4	SNTG2	2	1263060	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08		1263060	241936313	95	94099											
MYT1L	23040	broad.mit.edu	37	chr2	1926245	1926245	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatggctttctccagcagGgtcaggttccccttggtcat	12	12	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1926245	T	T	1926245	2	4	94	1	0	0	0	0	0	0	0	1	10201	1219	43	2		2	MYT1L	2	1926245	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	663185	1926245	241273128	96	94100											
COLEC11	78989	broad.mit.edu	37	chr2	3651775	3651775	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtgagtgaggagcaccCgccatgggggcccagacagc	16	11	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3651775	T	T	3651775	1	4	94	0	1	0	0	0	0	0	0	0	3743	667	23	4		4	COLEC11	2	3651775	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1725530	3651775	239547598	97	94101											
SMC6	79677	broad.mit.edu	37	chr2	17877754	17877754	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttccagcataggtataaaGataataaacaactcggtaaa	6	6	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17877754	A	A	17877754	1	1	94	0	1	0	0	0	0	0	0	0	14901	957	33	4		4	SMC6	2	17877754	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	14225979	17877754	225321619	98	94102											
DNMT3A	1788	broad.mit.edu	37	chr2	25469539	25469539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggctggaagccccccaggGcccattcaatcatgggcttg	12	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25469539	A	A	25469539	3	1	94	1	0	0	0	0	1	0	0	0	4716	1203	42	4	1565	4	DNMT3A	2	25469539	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	7591785	25469539	217729834	99	94103											
DNMT3A	1788	broad.mit.edu	37	chr2	25498451	25498451	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagggaccagttcgttggtCggcagaattactggagtggc	15	7	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25498451	T	T	25498451	1	4	94	0	1	0	0	0	0	0	0	0	4716	899	31	4		4	DNMT3A	2	25498451	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	28912	25498451	217700922	100	94104											
OTOF	9381	broad.mit.edu	37	chr2	26690204	26690204	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcccgcccccacacacCctagaagggtctgctcctag	7	19	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26690204	T	T	26690204	1	4	94	0	1	0	0	0	0	0	0	0	11397	638	22	4		4	OTOF	2	26690204	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1191753	26690204	216509169	101	94105											
CAD	790	broad.mit.edu	37	chr2	27465587	27465587	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgctacgtggcacctcccAgcctgcgcatgccacccact	9	19	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27465587	C	C	27465587	3	2	94	1	0	0	0	0	1	0	0	0	2591	188	7	5	6484	5	CAD	2	27465587	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	775383	27465587	215733786	102	94106											
IFT172	26160	broad.mit.edu	37	chr2	27679286	27679286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctatcatgtccttccaaGgatctttctttcagttatac	4	11	5	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27679286	T	T	27679286	1	4	94	0	1	0	0	0	0	0	0	0	7627	1015	35	2		2	IFT172	2	27679286	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	213699	27679286	215520087	103	94107											
YPEL5	51646	broad.mit.edu	37	chr2	30379480	30379480	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgcatttgttatccttttCtatttgctcctaggttttta	5	7	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30379480	G	G	30379480	1	3	94	0	1	0	0	0	0	0	0	0	17620	928	32	4		4	YPEL5	2	30379480	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2700194	30379480	212819893	104	94108											
XDH	7498	broad.mit.edu	37	chr2	31558933	31558933	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgatcatgctcctcccactCtcttgcatacctcacctccc	3	20	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31558933	T	T	31558933	1	4	94	0	1	0	0	0	0	0	0	0	17553	928	32	4		4	XDH	2	31558933	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1179453	31558933	211640440	105	94109											
LTBP1	4052	broad.mit.edu	37	chr2	33246320	33246320	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaggatcatcttaattactCtcttggatgccttgctttaa	6	8	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33246320	A	A	33246320	1	1	94	0	1	0	0	0	0	0	0	0	9160	928	32	3		3	LTBP1	2	33246320	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1687387	33246320	209953053	106	94110											
LTBP1	4052	broad.mit.edu	37	chr2	33540140	33540141	+	Intron	DNP	CA	AT	AT													gtcataatagatttatttgcCatctgtttgatagtatatgg							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	33540141	AT	AT	33540140	1	1	94	0	1	0	0	0	0	0	0	0	9160	609	21	2		2	LTBP1	2	33540140	Intron	DNP	CA	TCGA-35-4123-01A-01D-1105-08	293820	33540140	209659233	107	94111											
LTBP1	4052	broad.mit.edu	37	chr2	33590483	33590483	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtagccggcctcttgtgGgcaagcagacaacgtacact	12	11	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33590483	C	C	33590483	3	2	94	1	0	0	0	0	1	0	0	0	9160	1232	43	4	4801	4	LTBP1	2	33590483	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	50343	33590483	209608890	108	94112											
SLC8A1	6546	broad.mit.edu	37	chr2	40656817	40656817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtcacaaagaagacacGcaaatgcttaatcttccttg	7	10	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40656817	T	T	40656817	3	4	94	1	0	0	0	0	1	0	0	0	14820	1087	38	3	2465	3	SLC8A1	2	40656817	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	7066334	40656817	202542556	109	94113											
ABCG8	64241	broad.mit.edu	37	chr2	44079961	44079961	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtccagtatttcacagcCatcggctacccctgtcctcg	8	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44079961	A	A	44079961	2	1	94	1	0	0	0	0	0	0	0	1	72	581	21	2		2	ABCG8	2	44079961	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	3423144	44079961	199119412	110	94114											
SOCS5	9655	broad.mit.edu	37	chr2	46986062	46986062	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacattcctgttctacaaaGacccagagttcattggatgc	7	10	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46986062	T	T	46986062	3	4	94	1	0	0	0	0	1	0	0	0	15031	933	33	3	395	3	SOCS5	2	46986062	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2906101	46986062	196213311	111	94115											
TTC7A	57217	broad.mit.edu	37	chr2	47251540	47251540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgggtcctcgggggctGctgatcttctcctggaaacc	12	16	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47251540	T	T	47251540	1	4	94	0	1	0	0	0	0	0	0	0	16838	1334	46	3		3	TTC7A	2	47251540	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	265478	47251540	195947833	112	94116											
MSH6	2956	broad.mit.edu	37	chr2	48032810	48032810	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccagcatactcatgcatGcaacagcacattctctggtg	8	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48032810	C	C	48032810	3	2	94	1	0	0	0	0	1	0	0	0	9968	1319	46	4	3636	4	MSH6	2	48032810	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	781270	48032810	195166563	113	94117											
ANKRD53	79998	broad.mit.edu	37	chr2	71206297	71206297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgccaggccgcgccgccctGcctcgctcaccccgccccgc	10	25	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71206297	A	A	71206297	3	1	94	1	0	0	0	0	1	0	0	0	679	1319	46	4	247	4	ANKRD53	2	71206297	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	23173487	71206297	171993076	114	94118											
SLC4A5	57835	broad.mit.edu	37	chr2	74452074	74452074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccaggccaggtcgtgctGggaaaagatgaaatccagaa	12	8	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74452074	T	T	74452074	3	4	94	1	0	0	0	0	1	0	0	0	14771	1357	47	2	238	2	SLC4A5	2	74452074	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	3245777	74452074	168747299	115	94119											
SLC4A5	57835	broad.mit.edu	37	chr2	74542253	74542253	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcataatgggagattttaaTacagataaaaaactaagaca	7	4	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74542253	A	A	74542253	1	1	94	0	1	0	0	0	0	0	0	0	14771	1421	49	5		5	SLC4A5	2	74542253	5'Flank	SNP	T	TCGA-35-4123-01A-01D-1105-08	90179	74542253	168657120	116	94120											
POLR1A	25885	broad.mit.edu	37	chr2	86271325	86271325	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgtgtcttggggatgtcCaggccatcctccccatacag	10	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86271325	T	T	86271325	2	4	94	1	0	0	0	0	0	0	0	1	12304	581	21	4		4	POLR1A	2	86271325	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	11729072	86271325	156928048	117	94121											
RPIA	22934	broad.mit.edu	37	chr2	88998120	88998120	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgatggggtagggaggtaGaggagagggaggaagtggca	23	1	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88998120	A	A	88998120	1	1	94	0	1	0	0	0	0	0	0	0	13664	957	33	4		4	RPIA	2	88998120	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2726795	88998120	154201253	118	94122											
LMAN2L	81562	broad.mit.edu	37	chr2	97377555	97377555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggccatgggagcaagaGcgacacagcccacaccacca	11	15	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97377555	T	T	97377555	1	4	94	0	1	0	0	0	0	0	0	0	8913	986	34	3		3	LMAN2L	2	97377555	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	8379435	97377555	145821818	119	94123											
CHST10	9486	broad.mit.edu	37	chr2	101010245	101010245	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttgaagtatgttttcaatCtaaggaaaaaaacgaacaag	7	5	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101010245	A	A	101010245	1	1	94	0	1	0	0	0	0	0	0	0	3429	927	32	3		3	CHST10	2	101010245	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	3632690	101010245	142189128	120	94124											
SLC9A2	6549	broad.mit.edu	37	chr2	103274287	103274287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaattccattggcattgGggtgtctttgtttggtatct	12	5	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103274287	T	T	103274287	3	4	94	1	0	0	0	0	1	0	0	0	14826	1232	43	2	560	2	SLC9A2	2	103274287	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2264042	103274287	139925086	121	94125											
MARCO	8685	broad.mit.edu	37	chr2	119732244	119732244	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagagtctggacctctgaGgggtctgtaggtgaacggag	16	8	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119732244	A	A	119732244	1	1	94	0	1	0	0	0	0	0	0	0	9403	1015	35	4		4	MARCO	2	119732244	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	16457957	119732244	123467129	122	94126											
CNTNAP5	129684	broad.mit.edu	37	chr2	125281898	125281898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagcaacttgaatgatgGcctgtggcactcggttagca	13	9	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125281898	T	T	125281898	3	4	94	1	0	0	0	0	1	0	0	0	3682	1203	42	3	1377	3	CNTNAP5	2	125281898	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	5549654	125281898	117917475	123	94127											
WDR33	55339	broad.mit.edu	37	chr2	128528312	128528312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaataaataaataaataAccaaagtttggtcatctgaa	4	4	2	1	rs71394693		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128528312	G	G	128528312	1	3	94	0	1	0	0	0	0	0	0	0	17414	58	2	5		5	WDR33	2	128528312	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	3246414	128528312	114671061	124	94128											
HS6ST1	9394	broad.mit.edu	37	chr2	129025701	129025701	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgttttatcccccacaCcccccaagaggcctccccgt	6	20	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129025701	T	T	129025701	1	4	94	0	1	0	0	0	0	0	0	0	7437	522	18	4		4	HS6ST1	2	129025701	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	497389	129025701	114173672	125	94129											
FAM123C	205147	broad.mit.edu	37	chr2	131519727	131519727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagacccagcagccgtgGctgcagccagggaggggaca	15	15	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131519727	T	T	131519727	3	4	94	1	0	0	0	0	1	0	0	0	5470	1203	42	3	84	3	FAM123C	2	131519727	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2494026	131519727	111679646	126	94130											
POTEE	445582	broad.mit.edu	37	chr2	132021567	132021567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccctgtacacctctggcCgtactactggcatcgtgatg	10	14	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132021567	A	A	132021567	3	1	94	1	0	0	0	0	1	0	0	0	12360	652	23	1	2597	1	POTEE	2	132021567	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	501840	132021567	111177806	127	94131											
ZRANB3	84083	broad.mit.edu	37	chr2	136261918	136261918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccatttcttttgagggCaaaaatgatgccatctttct	7	10	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136261918	A	A	136261918	3	1	94	1	0	0	0	0	1	0	0	0	18353	710	25	3	3177	3	ZRANB3	2	136261918	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	4240351	136261918	106937455	128	94132											
LRP1B	53353	broad.mit.edu	37	chr2	141441479	141441479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtccatgccgggctgccCgcggcttgcccccctggatg	16	16	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141441479	A	A	141441479	1	1	94	0	1	0	0	0	0	0	0	0	9042	667	23	1		1	LRP1B	2	141441479	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	5179561	141441479	101757894	129	94133											
LRP1B	53353	broad.mit.edu	37	chr2	141643727	141643727	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccactttcagaaagctttCcccggtatattctgtcttct	5	13	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141643727	T	T	141643727	3	4	94	1	0	0	0	0	1	0	0	0	9042	855	30	4	10127	4	LRP1B	2	141643727	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	202248	141643727	101555646	130	94134											
EPC2	26122	broad.mit.edu	37	chr2	149542282	149542282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatatggctttatcatccaGcccagggatttcagctgtac	8	11	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149542282	T	T	149542282	3	4	94	1	0	0	0	0	1	0	0	0	5203	971	34	3	2113	3	EPC2	2	149542282	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	7898555	149542282	93657091	131	94135											
LY75	4065	broad.mit.edu	37	chr2	160708664	160708664	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgccataggctataaaacCagcatggaagcaatcattgt	8	9	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160708664	G	G	160708664	1	3	94	0	1	0	0	0	0	0	0	0	9187	609	21	4		4	LY75	2	160708664	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	11166382	160708664	82490709	132	94136											
SCN3A	6328	broad.mit.edu	37	chr2	165986747	165986747	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcccccacagaattgccAatgatcttaattagcatatt	6	10	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165986747	T	T	165986747	2	4	94	1	0	0	0	0	0	0	0	1	14031	126	5	5		5	SCN3A	2	165986747	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	5278083	165986747	77212626	133	94137											
SCN9A	6335	broad.mit.edu	37	chr2	167085307	167085307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagggcaaaacattcggaaCgatttggaacttgacttgca	10	7	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167085307	A	A	167085307	3	1	94	1	0	0	0	0	1	0	0	0	14038	536	19	3	1890	3	SCN9A	2	167085307	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1098560	167085307	76114066	134	94138											
XIRP2	129446	broad.mit.edu	37	chr2	168115433	168115433	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcagctgctggcagtcctGtgcagcctgctccaaaacca	11	14	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168115433	C	C	168115433	1	2	94	0	1	0	0	0	0	0	0	0	17557	1377	48	4		4	XIRP2	2	168115433	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	1030126	168115433	75083940	135	94139											
GAD1	2571	broad.mit.edu	37	chr2	171702584	171702584	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaacagaaggtatgtactcCgtggtgcatctgaactccag	10	10	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171702584	T	T	171702584	1	4	94	0	1	0	0	0	0	0	0	0	6239	667	23	4		4	GAD1	2	171702584	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	3587151	171702584	71496789	136	94140											
MAP1D	254042	broad.mit.edu	37	chr2	172945218	172945218	+	3'UTR	SNP	G	A	A													agaacttttagaagaaacagGgaaatgaccggtggtgcggt							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172945218	A	A	172945218	1	1	94	0	1	0	0	0	0	0	0	0	9321	1247	43	4		4	MAP1D	2	172945218	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	1242634	172945218	70254155	137	94141	420	2									
MAP1D	254042	broad.mit.edu	37	chr2	172945222	172945222	+	3'UTR	SNP	A	T	T													cttttagaagaaacagggaaAtgaccggtggtgcggtaacc							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172945222	T	T	172945222	1	4	94	0	1	0	0	0	0	0	0	0	9321	116	4	5		5	MAP1D	2	172945222	3'UTR	SNP	A	TCGA-35-4123-01A-01D-1105-08	4	172945222	70254151	138	94142	420	2									
RAPGEF4	11069	broad.mit.edu	37	chr2	173891779	173891779	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgatttaaaaaaaaaTaagcaaaattgttttccttt	4	3	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173891779	C	C	173891779	1	2	94	0	1	0	0	0	0	0	0	0	13154	1421	49	5		5	RAPGEF4	2	173891779	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	946557	173891779	69307594	139	94143											
SP3	6670	broad.mit.edu	37	chr2	174820756	174820756	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacactggacactgtaccatTtgatgaatctgatcctggtg	9	9	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174820756	C	C	174820756	3	2	94	1	0	0	0	0	1	0	0	0	15079	1841	64	5	1877	5	SP3	2	174820756	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	928977	174820756	68378617	140	94144											
TTN	7273	broad.mit.edu	37	chr2	179429587	179429587	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactggctcatgccattgcAcaagcatctgatcttttgag	8	11	4	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179429587	G	G	179429587	3	3	94	1	0	0	0	0	1	0	0	0	16861	159	6	5	26855	5	TTN	2	179429587	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	4608831	179429587	63769786	141	94145											
TTN	7273	broad.mit.edu	37	chr2	179449825	179449825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaactttgattttctgaGtgtctgtcccagaactgttc	7	10	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179449825	T	T	179449825	3	4	94	1	0	0	0	0	1	0	0	0	16861	1029	36	3	43549	3	TTN	2	179449825	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	20238	179449825	63749548	142	94146											
ZNF804A	91752	broad.mit.edu	37	chr2	185801222	185801222	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacagttcttgacatgtctAatgattgcatatctgtgcaa	7	9	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185801222	T	T	185801222	3	4	94	1	0	0	0	0	1	0	0	0	18299	362	13	5	1113	5	ZNF804A	2	185801222	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	6351397	185801222	57398151	143	94147											
FAM171B	165215	broad.mit.edu	37	chr2	187626438	187626438	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtttccatggtaaaaactCgggacgattttaaaatctac	8	7	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187626438	A	A	187626438	2	1	94	1	0	0	0	0	0	0	0	1	5536	875	31	3		3	FAM171B	2	187626438	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	1825216	187626438	55572935	144	94148											
PMS1	5378	broad.mit.edu	37	chr2	190719014	190719014	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgacgacttgttatggacCattacctagtacaaattctt	7	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190719014	T	T	190719014	3	4	94	1	0	0	0	0	1	0	0	0	12237	594	21	4	1046	4	PMS1	2	190719014	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	3092576	190719014	52480359	145	94149											
TMEFF2	23671	broad.mit.edu	37	chr2	193049172	193049172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcattctggtagctctccCcattggagccacacacaggc	8	15	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193049172	A	A	193049172	3	1	94	1	0	0	0	0	1	0	0	0	16137	623	22	2	836	2	TMEFF2	2	193049172	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2330158	193049172	50150201	146	94150											
PARD3B	117583	broad.mit.edu	37	chr2	205983604	205983604	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagaaataattagcatttAttattcagtaattatatttc	5	3	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205983604	T	T	205983604	1	4	94	0	1	0	0	0	0	0	0	0	11538	464	16	5		5	PARD3B	2	205983604	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	12934432	205983604	37215769	147	94151											
NRP2	8828	broad.mit.edu	37	chr2	206617766	206617766	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccacatacttcaaccccaGattcccttacaagcttcata	2	15	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206617766	T	T	206617766	1	4	94	0	1	0	0	0	0	0	0	0	10756	957	33	3		3	NRP2	2	206617766	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	634162	206617766	36581607	148	94152											
MYL1	4632	broad.mit.edu	37	chr2	211179550	211179550	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataatgctattcctctcaatGaaaaatacacgcctttgcaa	4	10	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211179550	A	A	211179550	1	1	94	0	1	0	0	0	0	0	0	0	10137	1305	45	4		4	MYL1	2	211179550	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	4561784	211179550	32019823	149	94153											
CPS1	1373	broad.mit.edu	37	chr2	211515045	211515045	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaccagtcaagtctagtatTagcataaacctgacctgctt	7	10	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211515045	C	C	211515045	1	2	94	0	1	0	0	0	0	0	0	0	3855	1769	61	5		5	CPS1	2	211515045	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	335495	211515045	31684328	150	94154											
MARCH4	57574	broad.mit.edu	37	chr2	217148264	217148264	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgtggaagccccaggcCcagcaaccccaccaggcagc	13	16	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217148264	T	T	217148264	1	4	94	0	1	0	0	0	0	0	0	0	9395	638	22	4		4	MARCH4	2	217148264	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	5633219	217148264	26051109	151	94155											
PTPRN	5798	broad.mit.edu	37	chr2	220164680	220164680	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccaaatcctagcagaccaGaaagcttcccaggatgcagc	9	14	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220164680	T	T	220164680	1	4	94	0	1	0	0	0	0	0	0	0	12915	957	33	3		3	PTPRN	2	220164680	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3016416	220164680	23034693	152	94156											
SPEG	10290	broad.mit.edu	37	chr2	220354241	220354241	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctagccaggccttgtcctCgctcaaggctgtgggtccac	11	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220354241	A	A	220354241	4	1	94	1	0	0	0	0	0	1	0	0	15154	893	31	3	8655	3	SPEG	2	220354241	Nonsense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	189561	220354241	22845132	153	94157											
TM4SF20	79853	broad.mit.edu	37	chr2	228243815	228243815	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cactcaccatcagacctgctCctataattcctgggaaccac	5	16	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228243815	G	G	228243815	3	3	94	1	0	0	0	0	1	0	0	0	16092	855	30	4	535	4	TM4SF20	2	228243815	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	7889574	228243815	14955558	154	94158											
WDR69	164781	broad.mit.edu	37	chr2	228769535	228769535	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagccaaccgctgacctccGttcctagagctcggccttct	8	18	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228769535	A	A	228769535	1	1	94	0	1	0	0	0	0	0	0	0	17446	1160	40	4		4	WDR69	2	228769535	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	525720	228769535	14429838	155	94159											
TRIP12	9320	broad.mit.edu	37	chr2	230650610	230650610	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggaaactatgctctaCccatattacactttaataaa	4	9	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230650610	G	G	230650610	1	3	94	0	1	0	0	0	0	0	0	0	16681	522	18	4		4	TRIP12	2	230650610	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1881075	230650610	12548763	156	94160											
FBXO36	130888	broad.mit.edu	37	chr2	230861624	230861624	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaggctttgtcaaacatcAcacagatttgcaaaggtaac	8	10	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230861624	T	T	230861624	2	4	94	1	0	0	0	0	0	0	0	1	5802	146	6	5		5	FBXO36	2	230861624	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	211014	230861624	12337749	157	94161											
NGEF	25791	broad.mit.edu	37	chr2	233834989	233834989	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggcattctgctccagggGatattcaaggtcaggggctc	15	9	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233834989	T	T	233834989	2	4	94	1	0	0	0	0	0	0	0	1	10489	1164	41	3		3	NGEF	2	233834989	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	2973365	233834989	9364384	158	94162											
OTOS	150677	broad.mit.edu	37	chr2	241079774	241079774	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgatctgcgactcagGcccacctgcagcaggatgaa	10	14	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241079774	T	T	241079774	1	4	94	0	1	0	0	0	0	0	0	0	11403	1218	42	3		3	OTOS	2	241079774	5'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	7244785	241079774	2119599	159	94163											
PPP1R7	5510	broad.mit.edu	37	chr2	242105748	242105748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtgtgctctccctcttGcagagcaaccggctgaccaa	10	14	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242105748	T	T	242105748	1	4	94	0	1	0	0	0	0	0	0	0	12477	1334	46	3		3	PPP1R7	2	242105748	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1025974	242105748	1093625	160	94164											
HDLBP	3069	broad.mit.edu	37	chr2	242170421	242170421	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggattcccgtcaggggcaaGagccggcccccactgctgag	15	14	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242170421	C	C	242170421	1	2	94	0	1	0	0	0	0	0	0	0	7092	957	33	4		4	HDLBP	2	242170421	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	64673	242170421	1028952	161	94165											
CHL1	10752	broad.mit.edu	37	chr3	383704	383704	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgactactgttgctttgcTgcatttccaagattaaggac	8	8	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	383704	A	A	383704	2	1	94	1	0	0	0	0	0	0	0	1	3380	1567	55	5		5	CHL1	3	383704	Silent	SNP	T	TCGA-35-4123-01A-01D-1105-08		383704	197638726	162	94166											
CNTN4	152330	broad.mit.edu	37	chr3	3030016	3030016	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaccatttttggttcatttActttgatttcagaattacca	4	8	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3030016	T	T	3030016	1	4	94	0	1	0	0	0	0	0	0	0	3675	406	14	5		5	CNTN4	3	3030016	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2646312	3030016	194992414	163	94167											
GRM7	2917	broad.mit.edu	37	chr3	7620535	7620535	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcactttcctgatgattGccaaaccagatgtggcagtg	9	10	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7620535	A	A	7620535	3	1	94	1	0	0	0	0	1	0	0	0	6868	1319	46	4	1972	4	GRM7	3	7620535	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	4590519	7620535	190401895	164	94168											
SRGAP3	9901	broad.mit.edu	37	chr3	9055137	9055137	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacacagggtcctgcccatCagggatgtgcatgagggtag	16	9	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9055137	T	T	9055137	3	4	94	1	0	0	0	0	1	0	0	0	15265	826	29	4	1321	4	SRGAP3	3	9055137	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1434602	9055137	188967293	165	94169											
SETD5	55209	broad.mit.edu	37	chr3	9506104	9506104	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatccaagctttgtgtttCacagacttgttgagcccatt	7	11	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9506104	A	A	9506104	1	1	94	0	1	0	0	0	0	0	0	0	14247	841	29	3		3	SETD5	3	9506104	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	450967	9506104	188516326	166	94170											
FANCD2	2177	broad.mit.edu	37	chr3	10140745	10140745	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttatagagttgacaattttCtgcattatagcctctcattt	6	7	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10140745	G	G	10140745	1	3	94	0	1	0	0	0	0	0	0	0	5722	928	32	4		4	FANCD2	3	10140745	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	634641	10140745	187881685	167	94171											
NUP210	23225	broad.mit.edu	37	chr3	13384856	13384856	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgggttacgcagctgcaGggcccccctctgctcaggtt	14	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13384856	A	A	13384856	1	1	94	0	1	0	0	0	0	0	0	0	10855	1015	35	4		4	NUP210	3	13384856	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3244111	13384856	184637574	168	94172											
HDAC11	79885	broad.mit.edu	37	chr3	13524875	13524875	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggggcaggggctgccacAggccaagtctgcagcctgtg	16	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13524875	T	T	13524875	1	4	94	0	1	0	0	0	0	0	0	0	7073	203	7	5		5	HDAC11	3	13524875	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	140019	13524875	184497555	169	94173											
ZNF385D	79750	broad.mit.edu	37	chr3	21552501	21552501	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcgtgcctttgtagtgGgccgcagcctggctctacaa	12	11	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21552501	T	T	21552501	2	4	94	1	0	0	0	0	0	0	0	1	18004	1219	43	2		2	ZNF385D	3	21552501	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	8027626	21552501	176469929	170	94174											
RARB	5915	broad.mit.edu	37	chr3	25215855	25215855	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagtgatgtgttcctgcTccagagcacctttctttctg	10	11	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25215855	A	A	25215855	1	1	94	0	1	0	0	0	0	0	0	0	13161	1566	54	5		5	RARB	3	25215855	5'UTR	SNP	T	TCGA-35-4123-01A-01D-1105-08	3663354	25215855	172806575	171	94175											
ULK4	54986	broad.mit.edu	37	chr3	41877535	41877535	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttaaacctatatgtaaaaAgcaggataccctgtaaaagt	6	7	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41877535	C	C	41877535	1	2	94	0	1	0	0	0	0	0	0	0	17104	87	3	5		5	ULK4	3	41877535	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	16661680	41877535	156144895	172	94176											
ZBTB47	92999	broad.mit.edu	37	chr3	42705455	42705455	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcggctgcccctggggacgGagctcggtgccgggcctggg	20	13	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42705455	T	T	42705455	1	4	94	0	1	0	0	0	0	0	0	0	17674	1189	41	3		3	ZBTB47	3	42705455	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	827920	42705455	155316975	173	94177											
CCR2	729230	broad.mit.edu	37	chr3	46400068	46400068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcaacaaacacgccttcCactggggagcaggaagtctc	9	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46400068	A	A	46400068	1	1	94	0	1	0	0	0	0	0	0	0	2971	581	21	2		2	CCR2	3	46400068	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	3694613	46400068	151622362	174	94178											
QARS	5859	broad.mit.edu	37	chr3	49141464	49141464	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaagaagtggacagacagGgtcctaatctcatgaaactc	9	10	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49141464	A	A	49141464	1	1	94	0	1	0	0	0	0	0	0	0	12979	1247	43	4		4	QARS	3	49141464	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2741396	49141464	148880966	175	94179											
ITIH1	3697	broad.mit.edu	37	chr3	52823629	52823629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctaagcaaaggcaggcaGgccccttcccaacccggatg	11	15	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52823629	A	A	52823629	1	1	94	0	1	0	0	0	0	0	0	0	7973	1015	35	4		4	ITIH1	3	52823629	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3682165	52823629	145198801	176	94180											
CACNA1D	776	broad.mit.edu	37	chr3	53531424	53531424	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacagccgacctgcccgcGcccttttctgtttatcactc	6	18	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53531424	A	A	53531424	3	1	94	1	0	0	0	0	1	0	0	0	2567	1087	38	4	319	4	CACNA1D	3	53531424	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	707795	53531424	144491006	177	94181											
SLMAP	7871	broad.mit.edu	37	chr3	57847886	57847886	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagatagcttaagattttagGtattgctttagctgggcgtg	12	4	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57847886	C	C	57847886	1	2	94	0	1	0	0	0	0	0	0	0	14863	1276	44	4		4	SLMAP	3	57847886	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	4316462	57847886	140174544	178	94182											
FOXP1	27086	broad.mit.edu	37	chr3	71021608	71021608	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgagacaacgtgaaaccaGttctttggtctaacaccatc	7	11	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71021608	C	C	71021608	1	2	94	0	1	0	0	0	0	0	0	0	6086	1044	36	4		4	FOXP1	3	71021608	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	13173722	71021608	127000822	179	94183											
SHQ1	55164	broad.mit.edu	37	chr3	72890283	72890283	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgatacctcttcacaGggtgtctgctcaatttccca	6	13	5	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72890283	C	C	72890283	2	2	94	1	0	0	0	0	0	0	0	1	14405	987	35	4		4	SHQ1	3	72890283	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	1868675	72890283	125132147	180	94184											
PDZRN3	23024	broad.mit.edu	37	chr3	73433091	73433091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctggtagtgctgggcgtGcgccgggatgtgcgcgtgct	19	10	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73433091	T	T	73433091	3	4	94	1	0	0	0	0	1	0	0	0	11803	1319	46	3	578	3	PDZRN3	3	73433091	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	542808	73433091	124589339	181	94185											
OR5H2	79310	broad.mit.edu	37	chr3	98002178	98002178	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcactatgcatacggctGttagccttctcatttttagg	7	9	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98002178	T	T	98002178	2	4	94	1	0	0	0	0	0	0	0	1	11256	1364	48	3		3	OR5H2	3	98002178	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	24569087	98002178	100020252	182	94186											
IMPG2	50939	broad.mit.edu	37	chr3	100948472	100948472	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggattcaggctcttgtttgGatgctcaactatgtggaaga	12	6	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100948472	A	A	100948472	1	1	94	0	1	0	0	0	0	0	0	0	7799	1189	41	4		4	IMPG2	3	100948472	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2946294	100948472	97073958	183	94187											
WDR52	55779	broad.mit.edu	37	chr3	113082164	113082164	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattctcgatactgaaaacaGaaatttaaaacaataacagg	5	7	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113082164	C	C	113082164	1	2	94	0	1	0	0	0	0	0	0	0	17431	957	33	4		4	WDR52	3	113082164	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	12133692	113082164	84940266	184	94188											
POLQ	10721	broad.mit.edu	37	chr3	121258460	121258460	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattgagtaaaaaggaacaaTacaggtgaaaaaacttgaaa	8	3	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121258460	C	C	121258460	1	2	94	0	1	0	0	0	0	0	0	0	12303	1421	49	5		5	POLQ	3	121258460	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	8176296	121258460	76763970	185	94189											
GOLGB1	2804	broad.mit.edu	37	chr3	121411082	121411082	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttatttcttcatgcagccTactggtcagttctctggagg	9	9	4	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121411082	A	A	121411082	3	1	94	1	0	0	0	0	1	0	0	0	6629	1521	53	5	2701	5	GOLGB1	3	121411082	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	152622	121411082	76611348	186	94190											
CSTA	1475	broad.mit.edu	37	chr3	122060408	122060408	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggatgacgagctgacgggCttttagcagcatgtacccaa	12	9	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122060408	T	T	122060408	2	4	94	1	0	0	0	0	0	0	0	1	4015	784	28	4		4	CSTA	3	122060408	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	649326	122060408	75962022	187	94191											
SEMA5B	54437	broad.mit.edu	37	chr3	122629675	122629675	+	Intron	DEL	G	-	-													tcaaaaaaaaaaaaaaaaaaGaaggctcccaccttgaattc							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122629675	-	-	122629675	6	5	94	0	1	1	0	1	0	0	0	0	14151	957	33	0		0	SEMA5B	3	122629675	Intron	DEL	G	TCGA-35-4123-01A-01D-1105-08	569267	122629675	75392755	188	94192											
ZXDC	79364	broad.mit.edu	37	chr3	126180752	126180752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaccgtggctgctgtccCgagaaccagagggctgtcca	13	13	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126180752	A	A	126180752	3	1	94	1	0	0	0	0	1	0	0	0	18381	652	23	1	849	1	ZXDC	3	126180752	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	3551077	126180752	71841678	189	94193											
CPNE4	131034	broad.mit.edu	37	chr3	131293942	131293942	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggatttggcagccacccatGatgtagtccaagaaagaatg	11	8	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131293942	C	C	131293942	3	2	94	1	0	0	0	0	1	0	0	0	3846	1280	45	4	801	4	CPNE4	3	131293942	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	5113190	131293942	66728488	190	94194											
EPHB1	2047	broad.mit.edu	37	chr3	134920202	134920202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaggaggacacagtgaGtggcttggcctggagcagac	17	7	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134920202	T	T	134920202	1	4	94	0	1	0	0	0	0	0	0	0	5216	1044	36	3		3	EPHB1	3	134920202	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3626260	134920202	63102228	191	94195											
SHOX2	6474	broad.mit.edu	37	chr3	157815836	157815836	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagacccagggctgcggCgtgctttttggctttcagtc	12	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157815836	T	T	157815836	3	4	94	1	0	0	0	0	1	0	0	0	14402	768	27	4	23	4	SHOX2	3	157815836	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	22895634	157815836	40206594	192	94196											
B3GALNT1	8706	broad.mit.edu	37	chr3	160803475	160803475	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgacctccccatgaattttCcacagtacctactttattta	3	13	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160803475	A	A	160803475	1	1	94	0	1	0	0	0	0	0	0	0	1250	870	30	3		3	B3GALNT1	3	160803475	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	2987639	160803475	37218955	193	94197											
SI	6476	broad.mit.edu	37	chr3	164786792	164786792	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatttcttatttgattctaTttaaggtattttccacattt	3	5	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164786792	A	A	164786792	1	1	94	0	1	0	0	0	0	0	0	0	14410	1508	52	5		5	SI	3	164786792	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	3983317	164786792	33235638	194	94198											
SERPINI2	5276	broad.mit.edu	37	chr3	167183287	167183287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catattttgttctcagaagaGccttcatcattggaattttg	7	7	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167183287	T	T	167183287	3	4	94	1	0	0	0	0	1	0	0	0	14232	971	34	3	588	3	SERPINI2	3	167183287	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2396495	167183287	30839143	195	94199											
WDR49	151790	broad.mit.edu	37	chr3	167319802	167319802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaacataagtagctagcCagtatattttaaaaactgac	5	7	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167319802	A	A	167319802	1	1	94	0	1	0	0	0	0	0	0	0	17429	609	21	2		2	WDR49	3	167319802	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	136515	167319802	30702628	196	94200											
SLC7A14	57709	broad.mit.edu	37	chr3	170214166	170214166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgaaccggaacatcagcCggctccaggctgagattgag	13	10	1	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170214166	A	A	170214166	1	1	94	0	1	0	0	0	0	0	0	0	14810	667	23	1		1	SLC7A14	3	170214166	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2894364	170214166	27808264	197	94201											
MCF2L2	23101	broad.mit.edu	37	chr3	182934005	182934005	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactgagaagggtggatattGatctgtctccctgctcccaa	11	10	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182934005	T	T	182934005	1	4	94	0	1	0	0	0	0	0	0	0	9473	1305	45	3		3	MCF2L2	3	182934005	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	12719839	182934005	15088425	198	94202											
MASP1	5648	broad.mit.edu	37	chr3	186953530	186953530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccatctgctcccacaccCagtccacgtaattggagacc	7	17	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186953530	A	A	186953530	1	1	94	0	1	0	0	0	0	0	0	0	9414	595	21	2		2	MASP1	3	186953530	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4019525	186953530	11068900	199	94203											
LRCH3	84859	broad.mit.edu	37	chr3	197544201	197544202	+	Intron	DEL	AT	-	-													aatatttttgattgtccaacAtgtgtgtgtgtgtgtctgtg					rs1273552	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197544202	-	-	197544201	6	5	94	0	1	1	0	1	0	0	0	0	9021	232	8	0		0	LRCH3	3	197544201	Intron	DEL	AT	TCGA-35-4123-01A-01D-1105-08	10590671	197544201	478229	200	94204											
FAM193A	8603	broad.mit.edu	37	chr4	2695659	2695659	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaaatgggtgttatgcctCactaacacagctacagaaac	9	9	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2695659	T	T	2695659	1	4	94	0	1	0	0	0	0	0	0	0	5571	841	29	4		4	FAM193A	4	2695659	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08		2695659	188458617	201	94205											
JAKMIP1	152789	broad.mit.edu	37	chr4	6086641	6086641	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgtatcactgaattcagttCagcaatttttagttgaaatc	6	8	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6086641	A	A	6086641	4	1	94	1	0	0	0	0	0	1	0	0	8010	835	29	3	1752	3	JAKMIP1	4	6086641	Nonsense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	3390982	6086641	185067635	202	94206											
PPP2R2C	5522	broad.mit.edu	37	chr4	6513617	6513617	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggtggtggtggtggtGgtgatggtggtggtggtggt	26	0	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6513617	A	A	6513617	1	1	94	0	1	0	0	0	0	0	0	0	12487	1363	47	4		4	PPP2R2C	4	6513617	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	426976	6513617	184640659	203	94207											
HTRA3	94031	broad.mit.edu	37	chr4	8304267	8304267	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagagtgccatcccctgCtaccccttcctctcatccct	5	19	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8304267	T	T	8304267	1	4	94	0	1	0	0	0	0	0	0	0	7525	812	28	4		4	HTRA3	4	8304267	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1790650	8304267	182850009	204	94208											
GBA3	57733	broad.mit.edu	37	chr4	22729631	22729631	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgatgttgacctcagctTctccaccggggcgttcccct	9	15	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22729631	C	C	22729631	1	2	94	0	1	0	0	0	0	0	0	0	6330	1798	62	5		5	GBA3	4	22729631	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	14425364	22729631	168424645	205	94209											
KLB	152831	broad.mit.edu	37	chr4	39439587	39439587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagtttccctgtgacttctCctggggtgtcactgaatctg	10	12	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39439587	A	A	39439587	3	1	94	1	0	0	0	0	1	0	0	0	8403	855	30	3	1587	3	KLB	4	39439587	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	16709956	39439587	151714689	206	94210											
GABRA2	2555	broad.mit.edu	37	chr4	46390663	46390663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatatctcacctggcagggtCccacaccaagaaaacaaaaa	6	12	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46390663	A	A	46390663	3	1	94	1	0	0	0	0	1	0	0	0	6221	855	30	3	1330	3	GABRA2	4	46390663	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	6951076	46390663	144763613	207	94211											
CEP135	9662	broad.mit.edu	37	chr4	56878095	56878095	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaacttctttctattgacActgagaggagacatcttcga	9	8	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56878095	T	T	56878095	3	4	94	1	0	0	0	0	1	0	0	0	3277	159	6	5	2824	5	CEP135	4	56878095	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	10487432	56878095	134276181	208	94212											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68699042	68699042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttccctcctcagcctcaGtgcctccaaggattctctgc	7	17	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68699042	T	T	68699042	3	4	94	1	0	0	0	0	1	0	0	0	16364	1029	36	3	700	3	TMPRSS11D	4	68699042	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	11820947	68699042	122455234	209	94213											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68935729	68935729	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttttgctgtcaatagctgGaataagcaaaacatgaatta	7	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68935729	T	T	68935729	1	4	94	0	1	0	0	0	0	0	0	0	16366	1189	41	3		3	TMPRSS11F	4	68935729	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	236687	68935729	122218547	210	94214											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69095238	69095238	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttgaattatttttcctaGaggacacaatgtaattagaa	6	5	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69095238	T	T	69095238	1	4	94	0	1	0	0	0	0	0	0	0	16363	957	33	3		3	TMPRSS11B	4	69095238	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	159509	69095238	122059038	211	94215											
UGT2B28	54490	broad.mit.edu	37	chr4	70156378	70156378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatgaggcaatctaccatGggatccctatggtaggcatt	10	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70156378	T	T	70156378	3	4	94	1	0	0	0	0	1	0	0	0	17086	1348	47	2	1177	2	UGT2B28	4	70156378	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1061140	70156378	120997898	212	94216											
EREG	2069	broad.mit.edu	37	chr4	75246765	75246765	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatccacgtgtggctcaagtGtcaataacaaagtgtagctc	9	9	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75246765	A	A	75246765	2	1	94	1	0	0	0	0	0	0	0	1	5262	1364	48	4		4	EREG	4	75246765	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	5090387	75246765	115907511	213	94217											
FRAS1	80144	broad.mit.edu	37	chr4	79343066	79343066	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcctatccggtatttcacGcaagaggatattaaccaggg	9	10	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79343066	A	A	79343066	2	1	94	1	0	0	0	0	0	0	0	1	6102	1074	38	4		4	FRAS1	4	79343066	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	4096301	79343066	111811210	214	94218											
PAQR3	152559	broad.mit.edu	37	chr4	79851513	79851513	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaattaacaaagtgacTaaagaaactaaagcaactta	4	6	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79851513	A	A	79851513	1	1	94	0	1	0	0	0	0	0	0	0	11530	1537	53	5		5	PAQR3	4	79851513	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	508447	79851513	111302763	215	94219											
MEPE	56955	broad.mit.edu	37	chr4	88767696	88767696	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgaccaggtgaagagaGgatagagtgaagaactgagt	15	5	0	7			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88767696	T	T	88767696	1	4	94	0	1	0	0	0	0	0	0	0	9571	1015	35	2		2	MEPE	4	88767696	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	8916183	88767696	102386580	216	94220											
UNC5C	8633	broad.mit.edu	37	chr4	96222645	96222645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagtcaccgcgcctggcCtttccaggatttttgaccag	11	13	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96222645	A	A	96222645	1	1	94	0	1	0	0	0	0	0	0	0	17119	696	24	2		2	UNC5C	4	96222645	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	7454949	96222645	94931631	217	94221											
AGXT2L1	64850	broad.mit.edu	37	chr4	109674307	109674307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttttgttctttttttcCcttaacatttctaaattctg	3	7	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109674307	A	A	109674307	1	1	94	0	1	0	0	0	0	0	0	0	406	638	22	2		2	AGXT2L1	4	109674307	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	13451662	109674307	81479969	218	94222											
RRH	10692	broad.mit.edu	37	chr4	110757323	110757323	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaaaaatgataggtaagaGacaagtttacactttataat	8	3	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110757323	T	T	110757323	1	4	94	0	1	0	0	0	0	0	0	0	13791	957	33	3		3	RRH	4	110757323	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1083016	110757323	80396953	219	94223											
C4orf21	55345	broad.mit.edu	37	chr4	113541279	113541279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttaacaatacctatggctCcagcaactttaacctcttca	4	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113541279	A	A	113541279	3	1	94	1	0	0	0	0	1	0	0	0	2277	855	30	3	6180	3	C4orf21	4	113541279	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2783956	113541279	77612997	220	94224											
ANK2	287	broad.mit.edu	37	chr4	114291045	114291045	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctatgatggtttattttTtgcacttcaaaacaaaaaag	5	5	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114291045	C	C	114291045	1	2	94	0	1	0	0	0	0	0	0	0	621	1856	64	5		5	ANK2	4	114291045	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	749766	114291045	76863231	221	94225											
SPATA5	166378	broad.mit.edu	37	chr4	123850195	123850195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttcctctgtctggcagGtgtatacagcctggcctatg	10	10	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123850195	T	T	123850195	3	4	94	1	0	0	0	0	1	0	0	0	15127	1275	44	3	299	3	SPATA5	4	123850195	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	9559150	123850195	67304081	222	94226											
INTU	27152	broad.mit.edu	37	chr4	128637582	128637582	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaattgttctttgggttAaccttgtagctgtgctttct	8	6	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128637582	T	T	128637582	3	4	94	1	0	0	0	0	1	0	0	0	7856	359	13	5	2882	5	INTU	4	128637582	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	4787387	128637582	62516694	223	94227											
PCDH10	57575	broad.mit.edu	37	chr4	134073607	134073607	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcggaggttcgacctgctGtggccgccaagcccgggcgc	17	14	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134073607	C	C	134073607	3	2	94	1	0	0	0	0	1	0	0	0	11601	1377	48	4	2314	4	PCDH10	4	134073607	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	5436025	134073607	57080669	224	94228											
TMEM154	201799	broad.mit.edu	37	chr4	153565758	153565758	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagaagtgtggattgccAtattaaaacgaggtcctaat	9	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153565758	G	G	153565758	1	3	94	0	1	0	0	0	0	0	0	0	16194	232	8	5		5	TMEM154	4	153565758	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	19492151	153565758	37588518	225	94229											
PPID	5481	broad.mit.edu	37	chr4	159638256	159638256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaacaccacatgtttccCatccaaatgaggagttggaa	8	11	0	1	rs146098645		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159638256	A	A	159638256	3	1	94	1	0	0	0	0	1	0	0	0	12422	594	21	2	710	2	PPID	4	159638256	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	6072498	159638256	31516020	226	94230											
TRIM60	166655	broad.mit.edu	37	chr4	165961743	165961743	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaatcagtggagctgaaAaagaaggtagaatataagag	12	3	1	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165961743	G	G	165961743	2	3	94	1	0	0	0	0	0	0	0	1	16660	11	1	5		5	TRIM60	4	165961743	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	6323487	165961743	25192533	227	94231											
GALNTL6	442117	broad.mit.edu	37	chr4	173269651	173269651	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttttgtatttgacacaccAttttcttttccctcatctcc	3	12	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173269651	T	T	173269651	1	4	94	0	1	0	0	0	0	0	0	0	6287	232	8	5		5	GALNTL6	4	173269651	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	7307908	173269651	17884625	228	94232											
EXOC3	11336	broad.mit.edu	37	chr5	458042	458042	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatcgcctggctgcggaaaGcgctggagacagacaagaaa	13	10	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	458042	C	C	458042	3	2	94	1	0	0	0	0	1	0	0	0	5345	971	34	4	1210	4	EXOC3	5	458042	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		458042	180457218	229	94233											
ADCY2	108	broad.mit.edu	37	chr5	7709407	7709407	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcctcggtccgcatgacCcggtacttggagtcctgggg	16	12	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7709407	A	A	7709407	2	1	94	1	0	0	0	0	0	0	0	1	294	610	22	2		2	ADCY2	5	7709407	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	7251365	7709407	173205853	230	94234											
CTNND2	1501	broad.mit.edu	37	chr5	10992502	10992502	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctgtgtatacaaaacacaGagtggccaccacagtacaaa	8	10	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10992502	T	T	10992502	1	4	94	0	1	0	0	0	0	0	0	0	4054	957	33	3		3	CTNND2	5	10992502	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3283095	10992502	169922758	231	94235											
CTNND2	1501	broad.mit.edu	37	chr5	11346809	11346809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggttaaccaggtctaGgcaggggcaggggaagttac	16	6	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11346809	T	T	11346809	1	4	94	0	1	0	0	0	0	0	0	0	4054	1015	35	2		2	CTNND2	5	11346809	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	354307	11346809	169568451	232	94236											
DNAH5	1767	broad.mit.edu	37	chr5	13885124	13885124	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttaattgtgtgagaggaaTgaatacgtttgcgaatggcc	13	4	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13885124	A	A	13885124	3	1	94	1	0	0	0	0	1	0	0	0	4644	1464	51	5	11161	5	DNAH5	5	13885124	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	2538315	13885124	167030136	233	94237											
MYO10	4651	broad.mit.edu	37	chr5	16902321	16902322	+	Intron	INS	-	T	T													ccaccaccaggcccggctaaINStttttttttttttaaagtac							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902322	T	T	16902321	6	5	94	0	1	1	1	0	0	0	0	0	10156	116	4	0		0	MYO10	5	16902321	Intron	INS	-	TCGA-35-4123-01A-01D-1105-08	3017197	16902321	164012939	234	94238											
PRDM9	56979	broad.mit.edu	37	chr5	23522321	23522321	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatgtagaaaggtagatGccaatttgatggtagatttc	12	3	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23522321	T	T	23522321	1	4	94	0	1	0	0	0	0	0	0	0	12569	1334	46	3		3	PRDM9	5	23522321	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	6620000	23522321	157392939	235	94239											
NPR3	4883	broad.mit.edu	37	chr5	32739117	32739117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcagttgagaaacaagGgctcaatatggaggattacg	12	5	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32739117	T	T	32739117	3	4	94	1	0	0	0	0	1	0	0	0	10691	1232	43	2	1050	2	NPR3	5	32739117	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	9216796	32739117	148176143	236	94240											
ADAMTS12	81792	broad.mit.edu	37	chr5	33588685	33588685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaataatgccagtttcccCgccgagccctgagctcacct	8	15	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33588685	T	T	33588685	1	4	94	0	1	0	0	0	0	0	0	0	257	667	23	4		4	ADAMTS12	5	33588685	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	849568	33588685	147326575	237	94241											
RXFP3	51289	broad.mit.edu	37	chr5	33936760	33936760	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagctcccacgcacgtcCcgcaggctagcctggcaaca	10	16	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33936760	A	A	33936760	1	1	94	0	1	0	0	0	0	0	0	0	13872	638	22	2		2	RXFP3	5	33936760	5'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	348075	33936760	146978500	238	94242											
PRLR	5618	broad.mit.edu	37	chr5	35089562	35089562	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacagcattttcatttttcAtaatggcattgcaagaagac	6	8	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35089562	T	T	35089562	1	4	94	0	1	0	0	0	0	0	0	0	12637	232	8	5		5	PRLR	5	35089562	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1152802	35089562	145825698	239	94243											
IL7R	3575	broad.mit.edu	37	chr5	35861272	35861272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacactcatacaaatctcCtctcacggttcagctttcag	4	13	5	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35861272	A	A	35861272	1	1	94	0	1	0	0	0	0	0	0	0	7775	696	24	2		2	IL7R	5	35861272	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	771710	35861272	145053988	240	94244											
WDR70	55100	broad.mit.edu	37	chr5	37506958	37506958	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaacagggtcacccgcctCattgcgctgcccccggtggg	14	15	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37506958	A	A	37506958	1	1	94	0	1	0	0	0	0	0	0	0	17448	841	29	3		3	WDR70	5	37506958	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1645686	37506958	143408302	241	94245											
OXCT1	5019	broad.mit.edu	37	chr5	41739717	41739717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctcaggcctataatccCagcattttggtaggcttagg	12	9	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41739717	A	A	41739717	1	1	94	0	1	0	0	0	0	0	0	0	11423	609	21	2		2	OXCT1	5	41739717	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4232759	41739717	139175543	242	94246											
C5orf34	375444	broad.mit.edu	37	chr5	43509410	43509410	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacttgtactgaatcatctTcataaagtatcattcgcagt	6	8	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43509410	C	C	43509410	3	2	94	1	0	0	0	0	1	0	0	0	2316	1783	62	5	1932	5	C5orf34	5	43509410	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	1769693	43509410	137405850	243	94247											
SV2C	22987	broad.mit.edu	37	chr5	75490673	75490673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaatgtattttgttccttGttcacttgctgttacatgtg	9	6	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75490673	T	T	75490673	1	4	94	0	1	0	0	0	0	0	0	0	15537	1392	48	3		3	SV2C	5	75490673	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	31981263	75490673	105424587	244	94248											
IQGAP2	10788	broad.mit.edu	37	chr5	75806716	75806717	+	Intron	DNP	TC	AA	AA													ttgcacctgtggggagggtcTcactctgggcacccctctca							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	75806717	AA	AA	75806716	1	1	94	0	1	0	0	0	0	0	0	0	7885	1566	54	5		5	IQGAP2	5	75806716	Intron	DNP	TC	TCGA-35-4123-01A-01D-1105-08	316043	75806716	105108544	245	94249											
JMY	133746	broad.mit.edu	37	chr5	78580128	78580128	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctaacgaagacatcatGgagaggatagattggcaagc	11	6	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78580128	A	A	78580128	1	1	94	0	1	0	0	0	0	0	0	0	8027	1363	47	4		4	JMY	5	78580128	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2773412	78580128	102335132	246	94250											
JMY	133746	broad.mit.edu	37	chr5	78580148	78580148	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggatagattggcaagCcttttctatgtcttttccaa	10	7	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78580148	T	T	78580148	1	4	94	0	1	0	0	0	0	0	0	0	8027	754	26	4		4	JMY	5	78580148	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	20	78580148	102335112	247	94251											
LNPEP	4012	broad.mit.edu	37	chr5	96278781	96278781	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtattgtttccagatgaGaatccataagtgactcattg	9	6	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96278781	T	T	96278781	1	4	94	0	1	0	0	0	0	0	0	0	8938	957	33	3		3	LNPEP	5	96278781	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	17698633	96278781	84636479	248	94252											
LOX	4015	broad.mit.edu	37	chr5	121413408	121413408	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggttgtcgcggatcagcagGatcggagtgcggggctgctg	19	9	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121413408	A	A	121413408	2	1	94	1	0	0	0	0	0	0	0	1	8985	1164	41	4		4	LOX	5	121413408	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	25134627	121413408	59501852	249	94253											
MEGF10	84466	broad.mit.edu	37	chr5	126738207	126738207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttccctggctggaggccCatctaattttccaagtctct	7	13	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126738207	A	A	126738207	1	1	94	0	1	0	0	0	0	0	0	0	9553	609	21	2		2	MEGF10	5	126738207	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	5324799	126738207	54177053	250	94254											
ACSL6	23305	broad.mit.edu	37	chr5	131324610	131324610	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatccactgtggagacacAtgaggcgggggtggggaaga	18	6	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131324610	G	G	131324610	1	3	94	0	1	0	0	0	0	0	0	0	181	232	8	5		5	ACSL6	5	131324610	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	4586403	131324610	49590650	251	94255											
PCDHB11	56125	broad.mit.edu	37	chr5	140581684	140581684	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatccaggcaaaaggtctTgggaagaatagtgaagaaaa	11	4	1	3	rs142465110	byFrequency	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140581684	C	C	140581684	2	2	94	1	0	0	0	0	0	0	0	1	11630	1799	63	5		5	PCDHB11	5	140581684	Silent	SNP	T	TCGA-35-4123-01A-01D-1105-08	9257074	140581684	40333576	252	94256											
PCDHB12	56124	broad.mit.edu	37	chr5	140590616	140590616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttcgtggcggtgcggCtgtgcaggaggagcagggcg	20	9	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140590616	A	A	140590616	3	1	94	1	0	0	0	0	1	0	0	0	11631	796	28	3	2139	3	PCDHB12	5	140590616	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	8932	140590616	40324644	253	94257											
ARAP3	64411	broad.mit.edu	37	chr5	141059477	141059477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctccgtccccctcatgCtctcctccccactcctccca	3	26	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141059477	A	A	141059477	1	1	94	0	1	0	0	0	0	0	0	0	842	812	28	3		3	ARAP3	5	141059477	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	468861	141059477	39855783	254	94258											
LARS	51520	broad.mit.edu	37	chr5	145562004	145562004	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagagcccctagagactggCcagtccggctccagggcccc	14	16	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145562004	T	T	145562004	1	4	94	0	1	0	0	0	0	0	0	0	8706	754	26	4		4	LARS	5	145562004	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4502527	145562004	35353256	255	94259											
SCGB3A2	117156	broad.mit.edu	37	chr5	147261642	147261642	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagagcggaggtggatggGgatggaagatgatgctccta	17	4	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147261642	T	T	147261642	1	4	94	0	1	0	0	0	0	0	0	0	14014	1247	43	2		2	SCGB3A2	5	147261642	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	1699638	147261642	33653618	256	94260											
SPINK5	11005	broad.mit.edu	37	chr5	147499565	147499565	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaatataatcttcccatcTtttcaggatacatgtgatga	5	9	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147499565	G	G	147499565	1	3	94	0	1	0	0	0	0	0	0	0	15180	1624	56	5		5	SPINK5	5	147499565	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	237923	147499565	33415695	257	94261											
SH3TC2	79628	broad.mit.edu	37	chr5	148431679	148431679	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatactcaacatggaagaatAgggcttgtctttggcatttg	10	6	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148431679	T	T	148431679	1	4	94	0	1	0	0	0	0	0	0	0	14375	435	15	5		5	SH3TC2	5	148431679	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	932114	148431679	32483581	258	94262											
FAT2	2196	broad.mit.edu	37	chr5	150946774	150946774	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctactggccagtcttggcgGatagaccctgtacagttgac	11	12	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150946774	A	A	150946774	2	1	94	1	0	0	0	0	0	0	0	1	5747	1164	41	4		4	FAT2	5	150946774	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	2515095	150946774	29968486	259	94263											
G3BP1	10146	broad.mit.edu	37	chr5	151179556	151179556	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctccccaaaggggacccaGaccaagtaagagctcagaag	10	13	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151179556	T	T	151179556	3	4	94	1	0	0	0	0	1	0	0	0	6201	942	33	3	980	3	G3BP1	5	151179556	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	232782	151179556	29735704	260	94264											
LARP1	23367	broad.mit.edu	37	chr5	154179044	154179044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcttatattactggtaGcattggactcataccaagct	6	8	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154179044	T	T	154179044	1	4	94	0	1	0	0	0	0	0	0	0	8700	986	34	3		3	LARP1	5	154179044	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2999488	154179044	26736216	261	94265											
SGCD	6444	broad.mit.edu	37	chr5	155935668	155935668	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaagctagaaggagactctGaattcttacaacctctctac	6	10	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155935668	T	T	155935668	4	4	94	1	0	0	0	0	0	1	0	0	14314	1291	45	3	260	3	SGCD	5	155935668	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1756624	155935668	24979592	262	94266											
HAVCR1	26762	broad.mit.edu	37	chr5	156469690	156469690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctgtcacggtgtcattcCcatctactcaacaagaagga	7	12	5	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156469690	A	A	156469690	3	1	94	1	0	0	0	0	1	0	0	0	7039	623	22	2	325	2	HAVCR1	5	156469690	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	534022	156469690	24445570	263	94267											
ITK	3702	broad.mit.edu	37	chr5	156638227	156638227	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgagaccccactctcggctCagtaggtctgctgtcagtca	10	15	5	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156638227	A	A	156638227	1	1	94	0	1	0	0	0	0	0	0	0	7979	841	29	3		3	ITK	5	156638227	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	168537	156638227	24277033	264	94268											
LSM11	134353	broad.mit.edu	37	chr5	157182279	157182279	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttgcacagtgaccagctCagcctgagctttggttttta	9	10	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157182279	A	A	157182279	1	1	94	0	1	0	0	0	0	0	0	0	9139	841	29	3		3	LSM11	5	157182279	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	544052	157182279	23732981	265	94269											
EBF1	1879	broad.mit.edu	37	chr5	158141019	158141019	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attacttatactcttaactcAtgcacatggcttttatattg	4	8	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158141019	T	T	158141019	1	4	94	0	1	0	0	0	0	0	0	0	4920	232	8	5		5	EBF1	5	158141019	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	958740	158141019	22774241	266	94270											
FAF2	23197	broad.mit.edu	37	chr5	175933972	175933972	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttttttcttcctgtcccCtcctaccccagtccctaaaa	2	17	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175933972	T	T	175933972	1	4	94	0	1	0	0	0	0	0	0	0	5416	696	24	4		4	FAF2	5	175933972	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	17792953	175933972	4981288	267	94271											
RGS14	10636	broad.mit.edu	37	chr5	176799028	176799028	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaccaaatcagcagcCcagcccatcgggggatcctt	9	16	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176799028	T	T	176799028	2	4	94	1	0	0	0	0	0	0	0	1	13406	610	22	4		4	RGS14	5	176799028	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	865056	176799028	4116232	268	94272											
DUSP22	56940	broad.mit.edu	37	chr6	348400	348400	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaggacatcggctccCagggcgcccagctgcacccc	11	19	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	348400	A	A	348400	1	1	94	0	1	0	0	0	0	0	0	0	4861	609	21	2		2	DUSP22	6	348400	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08		348400	170766667	269	94273											
IRF4	3662	broad.mit.edu	37	chr6	394900	394900	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagacgcgcctgcggtGcgctttgaacaagagcaatg	14	10	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	394900	A	A	394900	3	1	94	1	0	0	0	0	1	0	0	0	7902	1319	46	4	302	4	IRF4	6	394900	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	46500	394900	170720167	270	94274											
HUS1B	135458	broad.mit.edu	37	chr6	656684	656684	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcttctcgccgcccgggaCaggtgctccgccgtcagctc	13	18	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	656684	G	G	656684	2	3	94	1	0	0	0	0	0	0	0	1	7530	465	17	4		4	HUS1B	6	656684	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	261784	656684	170458383	271	94275											
NQO2	4835	broad.mit.edu	37	chr6	3019784	3019784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctcctgaaattgcatcCgaagaagaaagaaaggggat	11	6	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3019784	A	A	3019784	2	1	94	1	0	0	0	0	0	0	0	1	10707	639	23	1		1	NQO2	6	3019784	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	2363100	3019784	168095283	272	94276											
KIF13A	63971	broad.mit.edu	37	chr6	17817465	17817465	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccacattttgaactgggtCtagtgagccaagagacaagg	11	8	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17817465	A	A	17817465	5	1	94	1	0	0	0	0	0	0	1	0	8344	927	32	3	3748	3	KIF13A	6	17817465	Splice_Site	SNP	C	TCGA-35-4123-01A-01D-1105-08	14797681	17817465	153297602	273	94277											
HIST1H4E	8367	broad.mit.edu	37	chr6	26202877	26202877	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcctggtcagccacctcAgtaaaactggagaggattgt	13	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26202877	T	T	26202877	1	4	94	0	1	0	0	0	0	0	0	0	7236	203	7	5		5	HIST1H4E	6	26202877	5'Flank	SNP	A	TCGA-35-4123-01A-01D-1105-08	8385412	26202877	144912190	274	94278											
ZNF323	64288	broad.mit.edu	37	chr6	28295326	28295326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcctgaaggcaggtaggCatatttggttaaagaggggg	18	4	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28295326	A	A	28295326	1	1	94	0	1	0	0	0	0	0	0	0	17969	725	25	3		3	ZNF323	6	28295326	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2092449	28295326	142819741	275	94279											
GRM4	2914	broad.mit.edu	37	chr6	34008232	34008232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaaacatcaggagaggcCtcccattcccaccccacaga	8	15	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34008232	A	A	34008232	1	1	94	0	1	0	0	0	0	0	0	0	6865	696	24	2		2	GRM4	6	34008232	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	5712906	34008232	137106835	276	94280											
MDGA1	266727	broad.mit.edu	37	chr6	37617810	37617810	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggactggggtgggtgagagGatgaagaggggacaggccgg	23	4	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37617810	T	T	37617810	1	4	94	0	1	0	0	0	0	0	0	0	9499	1189	41	3		3	MDGA1	6	37617810	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3609578	37617810	133497257	277	94281											
C6orf138	442213	broad.mit.edu	37	chr6	47846409	47846409	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcacagtggtcaatggcgAaattcaaggtgtagataagg	14	5	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47846409	T	T	47846409	3	4	94	1	0	0	0	0	1	0	0	0	2355	246	9	5	373	5	C6orf138	6	47846409	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	10228599	47846409	123268658	278	94282											
CRISP2	7180	broad.mit.edu	37	chr6	49665556	49665556	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaattattgccattaaactCtaaacagtctacttacgcag	5	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49665556	G	G	49665556	1	3	94	0	1	0	0	0	0	0	0	0	3912	928	32	4		4	CRISP2	6	49665556	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1819147	49665556	121449511	279	94283											
GFRAL	389400	broad.mit.edu	37	chr6	55198792	55198792	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgaaaaagaaagcaacAatttcaaaattaaccacatc	4	8	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55198792	T	T	55198792	1	4	94	0	1	0	0	0	0	0	0	0	6415	145	5	5		5	GFRAL	6	55198792	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	5533236	55198792	115916275	280	94284											
BEND6	221336	broad.mit.edu	37	chr6	56840664	56840664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaatgcctatgttcatcaGtcatagagccaacacttgca	6	11	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56840664	T	T	56840664	1	4	94	0	1	0	0	0	0	0	0	0	1407	1044	36	3		3	BEND6	6	56840664	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1641872	56840664	114274403	281	94285											
EYS	346007	broad.mit.edu	37	chr6	66205086	66205086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcaaatctggggaacaGcttgattgcctgaagtatct	12	7	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66205086	T	T	66205086	3	4	94	1	0	0	0	0	1	0	0	0	5375	971	34	3	9338	3	EYS	6	66205086	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	9364422	66205086	104909981	282	94286											
TTK	7272	broad.mit.edu	37	chr6	80747670	80747670	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgatttgtgttttctctGacttggcatataggttggca	10	6	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80747670	T	T	80747670	1	4	94	0	1	0	0	0	0	0	0	0	16846	1305	45	3		3	TTK	6	80747670	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	14542584	80747670	90367397	283	94287											
DDO	8528	broad.mit.edu	37	chr6	110714106	110714106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggccatagtggtggactaCaggcagcctctgtccatctc	11	12	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110714106	A	A	110714106	3	1	94	1	0	0	0	0	1	0	0	0	4367	478	17	3	131	3	DDO	6	110714106	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	29966436	110714106	60400961	284	94288											
GJA1	2697	broad.mit.edu	37	chr6	121768009	121768009	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaacatgggtgactggagcGccttaggcaaactccttgac	12	11	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121768009	A	A	121768009	3	1	94	1	0	0	0	0	1	0	0	0	6464	1087	38	4	18	4	GJA1	6	121768009	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	11053903	121768009	49347058	285	94289											
THEMIS	387357	broad.mit.edu	37	chr6	128134714	128134714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctccttttcactcttagCgatctctaggtcataggccg	9	12	4	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128134714	A	A	128134714	3	1	94	1	0	0	0	0	1	0	0	0	15983	768	27	3	986	3	THEMIS	6	128134714	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	6366705	128134714	42980353	286	94290											
EPB41L2	2037	broad.mit.edu	37	chr6	131276035	131276035	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacacgaaccagtaaacacgGctagtgcagactggcagaat	10	11	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131276035	C	C	131276035	1	2	94	0	1	0	0	0	0	0	0	0	5195	1218	42	4		4	EPB41L2	6	131276035	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3141321	131276035	39839032	287	94291											
TAAR5	9038	broad.mit.edu	37	chr6	132910429	132910429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcacagatggcacagtGgcggtcaatggaaatgaaac	15	7	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132910429	T	T	132910429	3	4	94	1	0	0	0	0	1	0	0	0	15610	1348	47	2	620	2	TAAR5	6	132910429	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1634394	132910429	38204638	288	94292											
EZR	7430	broad.mit.edu	37	chr6	159208242	159208243	+	Intron	DEL	GA	-	-													atagtctttaccacctgcgtGagagagagagaggctcaaca							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159208243	-	-	159208242	6	5	94	0	1	1	0	1	0	0	0	0	5378	1305	45	0		0	EZR	6	159208242	Intron	DEL	GA	TCGA-35-4123-01A-01D-1105-08	26297813	159208242	11906825	289	94293											
LPA	4018	broad.mit.edu	37	chr6	161016267	161016267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttcccagtggctgaccCtgagtccacattctacttgg	8	14	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161016267	A	A	161016267	1	1	94	0	1	0	0	0	0	0	0	0	8990	696	24	2		2	LPA	6	161016267	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1808025	161016267	10098800	290	94294											
C6orf118	168090	broad.mit.edu	37	chr6	165715670	165715670	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggtggtctttctgaagCcgattcagaagtttcttcag	10	10	5	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165715670	A	A	165715670	2	1	94	1	0	0	0	0	0	0	0	1	2346	726	26	3		3	C6orf118	6	165715670	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	4699403	165715670	5399397	291	94295											
PDE10A	10846	broad.mit.edu	37	chr6	165808673	165808673	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttaaagtcattcataccagGatgtcccacaggaccgatga	8	10	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165808673	C	C	165808673	3	2	94	1	0	0	0	0	1	0	0	0	11724	1174	41	4	899	4	PDE10A	6	165808673	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	93003	165808673	5306394	292	94296											
T	6862	broad.mit.edu	37	chr6	166579969	166579969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggcagtttctccaggGcagacgtcgcctcccgttca	12	14	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166579969	T	T	166579969	1	4	94	0	1	0	0	0	0	0	0	0	15607	1218	42	3		3	T	6	166579969	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	771296	166579969	4535098	293	94297											
TNRC18	84629	broad.mit.edu	37	chr7	5360180	5360180	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgcctcctgcagcaactGctccagacagtagatgtggg	11	14	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5360180	A	A	5360180	4	1	94	1	0	0	0	0	0	1	0	0	16462	1328	46	4	2319	4	TNRC18	7	5360180	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		5360180	153778483	294	94298											
FBXL18	80028	broad.mit.edu	37	chr7	5540694	5540694	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagctggcagaggtggcgGcccaggccctccgagctgtg	18	12	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5540694	A	A	5540694	2	1	94	1	0	0	0	0	0	0	0	1	5771	1190	42	4		4	FBXL18	7	5540694	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	180514	5540694	153597969	295	94299											
DGKB	1607	broad.mit.edu	37	chr7	14216296	14216296	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccaagggtatataatgtcTacaacctaaatgtagtggct	9	7	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14216296	A	A	14216296	1	1	94	0	1	0	0	0	0	0	0	0	4506	1537	53	5		5	DGKB	7	14216296	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	8675602	14216296	144922367	296	94300											
AGR3	155465	broad.mit.edu	37	chr7	16900155	16900155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgaggctcatatgtgtaCaatctgttagagtatcttcc	8	10	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16900155	A	A	16900155	3	1	94	1	0	0	0	0	1	0	0	0	396	477	17	3	88	3	AGR3	7	16900155	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2683859	16900155	142238508	297	94301											
HDAC9	9734	broad.mit.edu	37	chr7	18705968	18705968	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaacagcactaggagcgacAgcagtgcttgtgtggatgac	14	9	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18705968	T	T	18705968	3	4	94	1	0	0	0	0	1	0	0	0	7081	188	7	5	1642	5	HDAC9	7	18705968	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	1805813	18705968	140432695	298	94302											
HDAC9	9734	broad.mit.edu	37	chr7	18868809	18868810	+	Frame_Shift_Ins	INS	-	T	T													tttgctgttgtgaggcccccINStggccatcacgctgaagaat							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18868810	T	T	18868809	7	5	94	1	0	1	1	0	0	0	0	0	7081	681	24	0	2465	0	HDAC9	7	18868809	Frame_Shift_Ins	INS	-	TCGA-35-4123-01A-01D-1105-08	162841	18868809	140269854	299	94303											
SP4	6671	broad.mit.edu	37	chr7	21470206	21470206	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttggcaaactgtacaggttCagaatattcagagtctttca	9	7	4	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21470206	A	A	21470206	3	1	94	1	0	0	0	0	1	0	0	0	15080	827	29	3	1433	3	SP4	7	21470206	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2601397	21470206	137668457	300	94304											
OSBPL3	26031	broad.mit.edu	37	chr7	24911443	24911443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagtattattaattaaGgcattcaatttaggtgccct	7	5	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24911443	A	A	24911443	1	1	94	0	1	0	0	0	0	0	0	0	11373	1015	35	4		4	OSBPL3	7	24911443	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3441237	24911443	134227220	301	94305											
POLD2	5425	broad.mit.edu	37	chr7	44156543	44156543	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccgtcaccacatccaccAgcagctgggtgcccagcagg	11	18	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44156543	C	C	44156543	3	2	94	1	0	0	0	0	1	0	0	0	12286	188	7	5	780	5	POLD2	7	44156543	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	19245100	44156543	114982120	302	94306											
GCK	2645	broad.mit.edu	37	chr7	44190501	44190501	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttgaaggcagagttccTctggggtgcctgtgcctccc	12	12	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44190501	C	C	44190501	1	2	94	0	1	0	0	0	0	0	0	0	6355	1566	54	5		5	GCK	7	44190501	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	33958	44190501	114948162	303	94307											
NPC1L1	29881	broad.mit.edu	37	chr7	44560479	44560479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctttcatctgcccagcCcacagccaccccagagaggc	8	18	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44560479	A	A	44560479	1	1	94	0	1	0	0	0	0	0	0	0	10666	638	22	2		2	NPC1L1	7	44560479	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	369978	44560479	114578184	304	94308											
MYO1G	64005	broad.mit.edu	37	chr7	45005450	45005450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccacctcgccaaggtgcCccgccatgcctgggtgggcc	14	18	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45005450	A	A	45005450	3	1	94	1	0	0	0	0	1	0	0	0	10168	623	22	2	913	2	MYO1G	7	45005450	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	444971	45005450	114133213	305	94309											
PKD1L1	168507	broad.mit.edu	37	chr7	47942152	47942152	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaacaaatttatgttgatGaacgtcaggctttcattcac	7	7	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47942152	A	A	47942152	1	1	94	0	1	0	0	0	0	0	0	0	12059	1305	45	4		4	PKD1L1	7	47942152	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2936702	47942152	111196511	306	94310											
WBSCR17	64409	broad.mit.edu	37	chr7	70853322	70853322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcggtccgtgcacagtgCcgtcaatcacacgcccacac	9	18	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70853322	A	A	70853322	3	1	94	1	0	0	0	0	1	0	0	0	17391	739	26	3	534	3	WBSCR17	7	70853322	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	22911170	70853322	88285341	307	94311											
ABHD11	83451	broad.mit.edu	37	chr7	73151153	73151153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcccggtggtatttctggCctctcagccaccccccttcc	8	18	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73151153	A	A	73151153	1	1	94	0	1	0	0	0	0	0	0	0	75	754	26	3		3	ABHD11	7	73151153	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2297831	73151153	85987510	308	94312											
DTX2	113878	broad.mit.edu	37	chr7	76112259	76112259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccccccacacaggaccGcttctgtgtttgggacccac	9	17	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76112259	T	T	76112259	3	4	94	1	0	0	0	0	1	0	0	0	4834	1087	38	3	709	3	DTX2	7	76112259	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2961106	76112259	83026404	309	94313											
SEMA3E	9723	broad.mit.edu	37	chr7	83016314	83016314	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaccaacaaactgttgtcCaaagcactgctgagctgcat	7	11	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83016314	T	T	83016314	3	4	94	1	0	0	0	0	1	0	0	0	14141	603	21	4	619	4	SEMA3E	7	83016314	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	6904055	83016314	76122349	310	94314											
FZD1	8321	broad.mit.edu	37	chr7	90895971	90895971	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggcggaggcgccccgccGcacccgcccatgagcccgga	16	19	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90895971	T	T	90895971	2	4	94	1	0	0	0	0	0	0	0	1	6188	1074	38	3		3	FZD1	7	90895971	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	7879657	90895971	68242692	311	94315											
CCDC132	55610	broad.mit.edu	37	chr7	92921085	92921085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgggaagttatgctcaGctattataggactatggaat	10	5	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92921085	T	T	92921085	3	4	94	1	0	0	0	0	1	0	0	0	2793	971	34	3	1105	3	CCDC132	7	92921085	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2025114	92921085	66217578	312	94316											
CALCR	799	broad.mit.edu	37	chr7	93090352	93090352	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatttttcatattttcttTaaaaaaaagatgaaagaaca	3	3	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93090352	C	C	93090352	1	2	94	0	1	0	0	0	0	0	0	0	2605	1769	61	5		5	CALCR	7	93090352	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	169267	93090352	66048311	313	94317											
LMTK2	22853	broad.mit.edu	37	chr7	97821047	97821047	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcagaggtcgactttgaaCagcagtggaacgctctgaag	12	9	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97821047	T	T	97821047	4	4	94	1	0	0	0	0	0	1	0	0	8933	479	17	4	1312	4	LMTK2	7	97821047	Nonsense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	4730695	97821047	61317616	314	94318											
ZKSCAN5	23660	broad.mit.edu	37	chr7	99110112	99110112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgcttcctcggaagatgGcaacacctggagcagtgcag	13	10	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99110112	T	T	99110112	3	4	94	1	0	0	0	0	1	0	0	0	17816	1203	42	3	457	3	ZKSCAN5	7	99110112	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1289065	99110112	60028551	315	94319											
CYP3A5	1577	broad.mit.edu	37	chr7	99260305	99260305	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctccagctaccatttatAacatctaaatgtgtgttgtt	6	9	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99260305	T	T	99260305	1	4	94	0	1	0	0	0	0	0	0	0	4213	377	13	5		5	CYP3A5	7	99260305	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	150193	99260305	59878358	316	94320											
GPC2	221914	broad.mit.edu	37	chr7	99773222	99773222	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggaggcggcggggtgagtcCccaaagggctgcagagagcc	19	11	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99773222	G	G	99773222	2	3	94	1	0	0	0	0	0	0	0	1	6663	610	22	4		4	GPC2	7	99773222	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	512917	99773222	59365441	317	94321											
SLC12A9	56996	broad.mit.edu	37	chr7	100464250	100464250	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctgcctccagggctaggTagagagggcccaggcaggcg	16	14	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100464250	A	A	100464250	1	1	94	0	1	0	0	0	0	0	0	0	14503	1653	57	5		5	SLC12A9	7	100464250	3'UTR	SNP	T	TCGA-35-4123-01A-01D-1105-08	691028	100464250	58674413	318	94322											
MUC17	140453	broad.mit.edu	37	chr7	100682645	100682645	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccagtggccagttctgagGctagcaccctttcaacaact	9	13	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100682645	A	A	100682645	3	1	94	1	0	0	0	0	1	0	0	0	10068	1203	42	4	7958	4	MUC17	7	100682645	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	218395	100682645	58456018	319	94323											
MUC17	140453	broad.mit.edu	37	chr7	100699565	100699565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaggtaagaagggcctGgatgggatgctggcctcccc	14	10	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100699565	T	T	100699565	1	4	94	0	1	0	0	0	0	0	0	0	10068	1363	47	2		2	MUC17	7	100699565	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	16920	100699565	58439098	320	94324											
CUX1	1523	broad.mit.edu	37	chr7	101847700	101847700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcccagggcagcgtcagCgacatgctgtcccgaccgaa	12	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101847700	A	A	101847700	3	1	94	1	0	0	0	0	1	0	0	0	4097	767	27	3	3078	3	CUX1	7	101847700	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1148135	101847700	57290963	321	94325											
RELN	5649	broad.mit.edu	37	chr7	103193923	103193923	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtacctcaaattgtatgatGgtgttctcattcacatttag	7	7	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103193923	A	A	103193923	2	1	94	1	0	0	0	0	0	0	0	1	13328	1335	47	4		4	RELN	7	103193923	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	1346223	103193923	55944740	322	94326											
SRPK2	6733	broad.mit.edu	37	chr7	104767464	104767464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctggaatagtcttcccCagaatgtggttcaaacaaat	8	9	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104767464	A	A	104767464	3	1	94	1	0	0	0	0	1	0	0	0	15278	594	21	2	313	2	SRPK2	7	104767464	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1573541	104767464	54371199	323	94327											
LRRN3	54674	broad.mit.edu	37	chr7	110764808	110764808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtgatggtggacacagCtatgtgaggaattacttaca	11	6	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110764808	A	A	110764808	3	1	94	1	0	0	0	0	1	0	0	0	9123	796	28	3	1982	3	LRRN3	7	110764808	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	5997344	110764808	48373855	324	94328											
C7orf53	286006	broad.mit.edu	37	chr7	112124764	112124764	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaaaatactatttgtggGtggttcttcataggcctgtc	11	6	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112124764	T	T	112124764	1	4	94	0	1	0	0	0	0	0	0	0	2427	1276	44	3		3	C7orf53	7	112124764	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1359956	112124764	47013899	325	94329											
IMPDH1	3614	broad.mit.edu	37	chr7	128041179	128041179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtcaggtcctgaggatGgaggcacagcccacgtaaag	15	9	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128041179	A	A	128041179	1	1	94	0	1	0	0	0	0	0	0	0	7796	1363	47	4		4	IMPDH1	7	128041179	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	15916415	128041179	31097484	326	94330											
METTL2B	55798	broad.mit.edu	37	chr7	128116783	128116783	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggcccgcaggaagttctcGcgttacggaaagtgaagtgt	15	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128116783	C	C	128116783	1	2	94	0	1	0	0	0	0	0	0	0	9593	1101	38	4		4	METTL2B	7	128116783	5'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	75604	128116783	31021880	327	94331											
TNPO3	23534	broad.mit.edu	37	chr7	128696197	128696197	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgacaccaaggtgatttGtgctctcgccactgcgtata	10	12	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128696197	A	A	128696197	1	1	94	0	1	0	0	0	0	0	0	0	16460	1392	48	4		4	TNPO3	7	128696197	5'Flank	SNP	G	TCGA-35-4123-01A-01D-1105-08	579414	128696197	30442466	328	94332											
MKLN1	4289	broad.mit.edu	37	chr7	130927493	130927493	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggtggctggaattgaccGctgtccccacaaagtgacag	12	11	1	2	rs149512727	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130927493	A	A	130927493	1	1	94	0	1	0	0	0	0	0	0	0	9696	1102	38	4		4	MKLN1	7	130927493	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2231296	130927493	28211170	329	94333											
PLXNA4	91584	broad.mit.edu	37	chr7	131908295	131908295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggacctacctcgggcagCttcactcggccttcctggaa	11	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131908295	A	A	131908295	3	1	94	1	0	0	0	0	1	0	0	0	12217	796	28	3	3692	3	PLXNA4	7	131908295	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	980802	131908295	27230368	330	94334											
NUP205	23165	broad.mit.edu	37	chr7	135322900	135322900	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgcggtggctcacgcctAtaatcccagcactttgggag	13	11	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135322900	G	G	135322900	1	3	94	0	1	0	0	0	0	0	0	0	10854	464	16	5		5	NUP205	7	135322900	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	3414605	135322900	23815763	331	94335											
CHRM2	1129	broad.mit.edu	37	chr7	136700630	136700630	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgactcatgtaccccaActaataccaccgtggaggta	8	11	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136700630	C	C	136700630	3	2	94	1	0	0	0	0	1	0	0	0	3408	43	2	5	1020	5	CHRM2	7	136700630	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	1377730	136700630	22438033	332	94336											
DGKI	9162	broad.mit.edu	37	chr7	137269862	137269862	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacattatctcataggaattCatcagcacatgactctccag	5	12	4	1	rs149233725	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137269862	G	G	137269862	1	3	94	0	1	0	0	0	0	0	0	0	4511	841	29	4		4	DGKI	7	137269862	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	569232	137269862	21868801	333	94337											
DGKI	9162	broad.mit.edu	37	chr7	137294217	137294217	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaacttggaccagatctcaTaggacagagtagactatgga	10	8	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137294217	C	C	137294217	1	2	94	0	1	0	0	0	0	0	0	0	4511	1421	49	5		5	DGKI	7	137294217	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	24355	137294217	21844446	334	94338											
TBXAS1	6916	broad.mit.edu	37	chr7	139717340	139717340	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggactgaggctcaggaatGagcagccatcagctcccaga	13	11	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139717340	A	A	139717340	1	1	94	0	1	0	0	0	0	0	0	0	15786	1305	45	4		4	TBXAS1	7	139717340	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2423123	139717340	19421323	335	94339											
JHDM1D	80853	broad.mit.edu	37	chr7	139800006	139800006	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagccaaagtaagagtaTggctcatctttctggagggc	11	8	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139800006	A	A	139800006	1	1	94	0	1	0	0	0	0	0	0	0	8018	1479	51	5		5	JHDM1D	7	139800006	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	82666	139800006	19338657	336	94340											
MGAM	8972	broad.mit.edu	37	chr7	141778563	141778563	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaggttagagaactttaAgaccacatgctgtgctgatc	10	7	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141778563	C	C	141778563	1	2	94	0	1	0	0	0	0	0	0	0	9634	87	3	5		5	MGAM	7	141778563	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1978557	141778563	17360100	337	94341											
PRSS1	5644	broad.mit.edu	37	chr7	142458580	142458580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcgtaagtgtggggccCccgactgcaaagctcccggc	13	14	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142458580	A	A	142458580	1	1	94	0	1	0	0	0	0	0	0	0	12720	638	22	2		2	PRSS1	7	142458580	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	680017	142458580	16680083	338	94342											
EPHB6	2051	broad.mit.edu	37	chr7	142563342	142563342	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttgcccctgcctggagggCttctaccgggccagttccga	13	14	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142563342	G	G	142563342	2	3	94	1	0	0	0	0	0	0	0	1	5220	784	28	4		4	EPHB6	7	142563342	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	104762	142563342	16575321	339	94343											
EPHB6	2051	broad.mit.edu	37	chr7	142565987	142565987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcataacatactccacaCccctccaggactcggggtga	8	16	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142565987	A	A	142565987	1	1	94	0	1	0	0	0	0	0	0	0	5220	522	18	3		3	EPHB6	7	142565987	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2645	142565987	16572676	340	94344											
TRPV5	56302	broad.mit.edu	37	chr7	142625439	142625439	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgagacagacagacagtGggaaccagcaaacctctgca	10	12	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142625439	A	A	142625439	1	1	94	0	1	0	0	0	0	0	0	0	16724	1363	47	4		4	TRPV5	7	142625439	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	59452	142625439	16513224	341	94345											
EZH2	2146	broad.mit.edu	37	chr7	148511235	148511235	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaagcggttttgaccttcaGagagaggtttggaggttctt	14	5	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148511235	C	C	148511235	1	2	94	0	1	0	0	0	0	0	0	0	5377	957	33	4		4	EZH2	7	148511235	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	5885796	148511235	10627428	342	94346											
SSPO	23145	broad.mit.edu	37	chr7	149475980	149475980	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctgtggaccacgagctcTggggacagacacaaggcctc	12	13	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149475980	A	A	149475980	3	1	94	1	0	0	0	0	1	0	0	0	15307	1580	55	5	972	5	SSPO	7	149475980	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	964745	149475980	9662683	343	94347											
SSPO	23145	broad.mit.edu	37	chr7	149520961	149520961	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgatggtggaagggagacAgagggctggggccagggaat	21	4	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149520961	T	T	149520961	1	4	94	0	1	0	0	0	0	0	0	0	15307	203	7	5		5	SSPO	7	149520961	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	44981	149520961	9617702	344	94348											
MLL3	58508	broad.mit.edu	37	chr7	151945162	151945162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcaagtctgaagaaggtGttggggaggaagacacatct	15	5	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151945162	T	T	151945162	3	4	94	1	0	0	0	0	1	0	0	0	9715	1377	48	3	12562	3	MLL3	7	151945162	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2424201	151945162	7193501	345	94349											
MLL3	58508	broad.mit.edu	37	chr7	151962128	151962128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgaaaacttacttgcaGttctggcacactttgcactc	7	10	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151962128	T	T	151962128	3	4	94	1	0	0	0	0	1	0	0	0	9715	1020	36	3	13764	3	MLL3	7	151962128	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	16966	151962128	7176535	346	94350											
INSIG1	3638	broad.mit.edu	37	chr7	155100178	155100178	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaccctgaagtcttcccttGactgcccgcactggcgcctg	9	16	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155100178	C	C	155100178	1	2	94	0	1	0	0	0	0	0	0	0	7835	1305	45	4		4	INSIG1	7	155100178	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	3138050	155100178	4038485	347	94351											
VIPR2	7434	broad.mit.edu	37	chr7	158835748	158835748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggatggctggtcagggCagtgcaacgtgccagagctg	18	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158835748	A	A	158835748	3	1	94	1	0	0	0	0	1	0	0	0	17297	710	25	3	773	3	VIPR2	7	158835748	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	3735570	158835748	302915	348	94352											
MYOM2	9172	broad.mit.edu	37	chr8	2057240	2057240	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgataaggggcgggttcGcttctggctccaggctgagc	15	9	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2057240	A	A	2057240	3	1	94	1	0	0	0	0	1	0	0	0	10186	1087	38	4	3192	4	MYOM2	8	2057240	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		2057240	144306782	349	94353											
ADAM28	10863	broad.mit.edu	37	chr8	24209637	24209637	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcggtgaaagtcatagcccAcaacacttcattatttcttc	5	11	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24209637	C	C	24209637	1	2	94	0	1	0	0	0	0	0	0	0	246	174	6	5		5	ADAM28	8	24209637	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	22152397	24209637	122154385	350	94354											
TM2D2	83877	broad.mit.edu	37	chr8	38851131	38851131	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaattccatctaaggcatGgcactggactgaagtgtgtt	10	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38851131	A	A	38851131	3	1	94	1	0	0	0	0	1	0	0	0	16087	1348	47	4	288	4	TM2D2	8	38851131	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	14641494	38851131	107512891	351	94355											
ANK1	286	broad.mit.edu	37	chr8	41519586	41519586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtttgagaccagcctggCcaacatggtgaaaccctgtc	12	11	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41519586	A	A	41519586	1	1	94	0	1	0	0	0	0	0	0	0	620	754	26	3		3	ANK1	8	41519586	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2668455	41519586	104844436	352	94356											
PLAT	5327	broad.mit.edu	37	chr8	42037949	42037950	+	Intron	INS	-	G	G													gctgtgggatttcccctaaaINSgggcttggtttctaggcgtt							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42037950	G	G	42037949	6	5	94	0	1	1	1	0	0	0	0	0	12116	87	3	0		0	PLAT	8	42037949	Intron	INS	-	TCGA-35-4123-01A-01D-1105-08	518363	42037949	104326073	353	94357											
POTEA	340441	broad.mit.edu	37	chr8	43211932	43211932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatcaaaaatccaggatgCagttatttcagaagaacact	6	9	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43211932	A	A	43211932	3	1	94	1	0	0	0	0	1	0	0	0	12356	710	25	3	1437	3	POTEA	8	43211932	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1173983	43211932	103152090	354	94358											
PRKDC	5591	broad.mit.edu	37	chr8	48733567	48733567	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtatgtctaattatttTatttctattatattctttgc	4	4	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48733567	C	C	48733567	1	2	94	0	1	0	0	0	0	0	0	0	12627	1769	61	5		5	PRKDC	8	48733567	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	5521635	48733567	97630455	355	94359											
PRKDC	5591	broad.mit.edu	37	chr8	48790258	48790258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgaaatgcgtatggttcCtgagatcccaggccagaatg	11	9	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48790258	A	A	48790258	1	1	94	0	1	0	0	0	0	0	0	0	12627	696	24	2		2	PRKDC	8	48790258	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	56691	48790258	97573764	356	94360											
SNTG1	54212	broad.mit.edu	37	chr8	51314704	51314704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttttgctgtaaactggcCacaaaattacaacctataaa	5	8	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51314704	A	A	51314704	1	1	94	0	1	0	0	0	0	0	0	0	14988	609	21	2		2	SNTG1	8	51314704	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2524446	51314704	95049318	357	94361											
ASPH	444	broad.mit.edu	37	chr8	62580819	62580819	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttagtttttctcttggctAccccactgggtccttctgtt	7	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62580819	C	C	62580819	1	2	94	0	1	0	0	0	0	0	0	0	1057	391	14	5		5	ASPH	8	62580819	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	11266115	62580819	83783203	358	94362											
MYBL1	4603	broad.mit.edu	37	chr8	67524893	67524893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactctccacacgtcgcagCtgccctccggtcatcgaggc	9	18	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67524893	A	A	67524893	1	1	94	0	1	0	0	0	0	0	0	0	10103	812	28	3		3	MYBL1	8	67524893	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4944074	67524893	78839129	359	94363											
PREX2	80243	broad.mit.edu	37	chr8	69031067	69031067	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaatcccattttaaagGgagtgagttaaaaagcaatg	8	7	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69031067	A	A	69031067	1	1	94	0	1	0	0	0	0	0	0	0	12583	1247	43	4		4	PREX2	8	69031067	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1506174	69031067	77332955	360	94364											
ZFHX4	79776	broad.mit.edu	37	chr8	77765131	77765131	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagggaggcctatgacaagCtttatccaatttctccatct	7	11	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77765131	T	T	77765131	3	4	94	1	0	0	0	0	1	0	0	0	17761	797	28	4	6008	4	ZFHX4	8	77765131	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	8734064	77765131	68598891	361	94365											
ZFHX4	79776	broad.mit.edu	37	chr8	77766327	77766327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgggaccagcaccccCctgattccatcacccaaacc	7	19	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77766327	A	A	77766327	2	1	94	1	0	0	0	0	0	0	0	1	17761	610	22	2		2	ZFHX4	8	77766327	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	1196	77766327	68597695	362	94366											
STMN2	11075	broad.mit.edu	37	chr8	80567438	80567438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccatgggcagggtctcaCagtgtagcattgagttagca	12	10	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80567438	A	A	80567438	1	1	94	0	1	0	0	0	0	0	0	0	15427	493	17	3		3	STMN2	8	80567438	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2801111	80567438	65796584	363	94367											
MMP16	4325	broad.mit.edu	37	chr8	89053848	89053848	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgctggctgtgttgtcCagtttgatgacaatgtctac	11	8	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89053848	A	A	89053848	2	1	94	1	0	0	0	0	0	0	0	1	9748	581	21	2		2	MMP16	8	89053848	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	8486410	89053848	57310174	364	94368											
PDP1	54704	broad.mit.edu	37	chr8	94935757	94935758	+	Nonsense_Mutation	DNP	CG	TT	TT													cgccacgctgtgggcaacaaCgagtttgggactgttgatca							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	94935758	TT	TT	94935757	4	4	94	1	0	0	0	0	0	1	0	0	11779	535	19	4	1653	4	PDP1	8	94935757	Nonsense_Mutation	DNP	CG	TCGA-35-4123-01A-01D-1105-08	5881909	94935757	51428265	365	94369											
CDH17	1015	broad.mit.edu	37	chr8	95188777	95188777	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcctgttacctgggcgaGagttctgccttactgagcct	11	13	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95188777	T	T	95188777	3	4	94	1	0	0	0	0	1	0	0	0	3132	942	33	3	2138	3	CDH17	8	95188777	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	253020	95188777	51175245	366	94370											
SPAG1	6674	broad.mit.edu	37	chr8	101206247	101206247	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttgtcttagttgtattcAtttttcaacatctttatgtt	5	7	4	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101206247	G	G	101206247	1	3	94	0	1	0	0	0	0	0	0	0	15091	232	8	5		5	SPAG1	8	101206247	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	6017470	101206247	45157775	367	94371											
RIMS2	9699	broad.mit.edu	37	chr8	104671839	104671840	+	Intron	DNP	CC	AA	AA													tactgctgcagcagctgctaCcccagtttcatctgttttcc							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	104671840	AA	AA	104671839	1	1	94	0	1	0	0	0	0	0	0	0	13479	522	18	3		3	RIMS2	8	104671839	Intron	DNP	CC	TCGA-35-4123-01A-01D-1105-08	3465592	104671839	41692183	368	94372											
RIMS2	9699	broad.mit.edu	37	chr8	105261102	105261102	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgttgaaaatgaaattctCtaaatttcatagaatcttct	4	5	4	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105261102	A	A	105261102	1	1	94	0	1	0	0	0	0	0	0	0	13479	928	32	3		3	RIMS2	8	105261102	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	589263	105261102	41102920	369	94373											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457421	110457421	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggagaaggtttggggactGttttggaggacattgctgtt	16	3	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110457421	C	C	110457421	3	2	94	1	0	0	0	0	1	0	0	0	12067	1377	48	4	5473	4	PKHD1L1	8	110457421	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	5196319	110457421	35906601	370	94374											
CSMD3	114788	broad.mit.edu	37	chr8	113347757	113347757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagattgattgtggaagtaGttttgaaccgtatttaataa	9	3	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113347757	A	A	113347757	1	1	94	0	1	0	0	0	0	0	0	0	3980	1044	36	4		4	CSMD3	8	113347757	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2890336	113347757	33016265	371	94375											
CSMD3	114788	broad.mit.edu	37	chr8	113871274	113871274	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattgcgccaaaatcctactTgagttataaattttccatac	4	9	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113871274	A	A	113871274	1	1	94	0	1	0	0	0	0	0	0	0	3980	1827	63	5		5	CSMD3	8	113871274	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	523517	113871274	32492748	372	94376											
TRPS1	7227	broad.mit.edu	37	chr8	116427219	116427219	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttgttgagctgctcagCctgaagtgcctctgggttaa	12	9	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116427219	G	G	116427219	3	3	94	1	0	0	0	0	1	0	0	0	16718	739	26	4	971	4	TRPS1	8	116427219	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2555945	116427219	29936803	373	94377											
MTBP	27085	broad.mit.edu	37	chr8	121467628	121467628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtactattttgagacatttcAgatctaactttttaaaaatt	4	5	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121467628	T	T	121467628	1	4	94	0	1	0	0	0	0	0	0	0	10006	203	7	5		5	MTBP	8	121467628	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	5040409	121467628	24896394	374	94378											
FER1L6	654463	broad.mit.edu	37	chr8	124998416	124998416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagctttgaagtttctattGgtaagtacagataagcacag	9	6	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124998416	T	T	124998416	3	4	94	1	0	0	0	0	1	0	0	0	5872	1362	47	2	1561	2	FER1L6	8	124998416	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	3530788	124998416	21365606	375	94379											
CYHR1	50626	broad.mit.edu	37	chr8	145690322	145690322	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtacgaggacacagataGgagatactcaactttggaga	11	6	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145690322	T	T	145690322	1	4	94	0	1	0	0	0	0	0	0	0	4173	1015	35	2		2	CYHR1	8	145690322	5'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	20691906	145690322	673700	376	94380											
KDM4C	23081	broad.mit.edu	37	chr9	7049120	7049120	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtcatgtgcgccgttgcgGtcccagaagttcgattcact	11	11	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7049120	C	C	7049120	3	2	94	1	0	0	0	0	1	0	0	0	8200	1261	44	4	2476	4	KDM4C	9	7049120	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		7049120	134164311	377	94381											
FREM1	158326	broad.mit.edu	37	chr9	14859286	14859287	+	Missense_Mutation	DNP	CC	AA	AA													cagccgagttctcgcagtgtCcaggctgacggtacattcca							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	14859287	AA	AA	14859286	3	1	94	1	0	0	0	0	1	0	0	0	6104	855	30	3	6199	3	FREM1	9	14859286	Missense_Mutation	DNP	CC	TCGA-35-4123-01A-01D-1105-08	7810166	14859286	126354145	378	94382											
IFNA4	3441	broad.mit.edu	37	chr9	21187546	21187546	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccattgggatgttgcaaatAttgctaggctacttgagatg	12	6	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21187546	G	G	21187546	1	3	94	0	1	0	0	0	0	0	0	0	7609	464	16	5		5	IFNA4	9	21187546	5'UTR	SNP	A	TCGA-35-4123-01A-01D-1105-08	6328260	21187546	120025885	379	94383											
SMU1	55234	broad.mit.edu	37	chr9	33073725	33073725	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccacagtattcagagacaCagtagtctcctcctgcaagg	9	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33073725	G	G	33073725	3	3	94	1	0	0	0	0	1	0	0	0	14931	478	17	4	1479	4	SMU1	9	33073725	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	11886179	33073725	108139706	380	94384											
KIF24	347240	broad.mit.edu	37	chr9	34263190	34263190	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaaagtgggagaacaaGcacatcaagtatcaagtgca	11	8	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34263190	A	A	34263190	1	1	94	0	1	0	0	0	0	0	0	0	8362	986	34	4		4	KIF24	9	34263190	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1189465	34263190	106950241	381	94385											
FBXO10	26267	broad.mit.edu	37	chr9	37516063	37516063	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccgtaggcccggaacgagTggatccggttctttattacc	12	11	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37516063	A	A	37516063	3	1	94	1	0	0	0	0	1	0	0	0	5783	1696	59	5	344	5	FBXO10	9	37516063	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	3252873	37516063	103697368	382	94386											
FRMPD1	22844	broad.mit.edu	37	chr9	37733495	37733495	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggggaatagagaactttAtatctccaactttactccga	7	9	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37733495	G	G	37733495	3	3	94	1	0	0	0	0	1	0	0	0	6117	449	16	5	1059	5	FRMPD1	9	37733495	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	217432	37733495	103479936	383	94387											
FAM75A3	727830	broad.mit.edu	37	chr9	40702715	40702715	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccggtccagaccccccaggTgaggtgggcgaaagagcacc	14	14	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40702715	G	G	40702715	2	3	94	1	0	0	0	0	0	0	0	1	5672	1683	59	5		5	FAM75A3	9	40702715	Silent	SNP	T	TCGA-35-4123-01A-01D-1105-08	2969220	40702715	100510716	384	94388											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69382304	69382304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcagcacaggtagcgggGgctcagcccggggtgggagg	20	10	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69382304	T	T	69382304	1	4	94	0	1	0	0	0	0	0	0	0	650	1247	43	2		2	ANKRD20A4	9	69382304	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	28679589	69382304	71831127	385	94389											
CDK20	23552	broad.mit.edu	37	chr9	90588985	90588985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagacactgccagcccaccCtcggctgggaaagagagatg	13	13	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90588985	A	A	90588985	1	1	94	0	1	0	0	0	0	0	0	0	3167	681	24	2		2	CDK20	9	90588985	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	21206681	90588985	50624446	386	94390											
COL15A1	1306	broad.mit.edu	37	chr9	101807041	101807041	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctggaatgcatggagccCcaggaccaatggtaagtcag	12	10	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101807041	T	T	101807041	3	4	94	1	0	0	0	0	1	0	0	0	3704	623	22	4	2770	4	COL15A1	9	101807041	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	11218056	101807041	39406390	387	94391											
TMEFF1	8577	broad.mit.edu	37	chr9	103271243	103271243	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgaaataaactattaaTattcatgcctagttctgaga	6	5	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103271243	A	A	103271243	1	1	94	0	1	0	0	0	0	0	0	0	16136	1421	49	5		5	TMEFF1	9	103271243	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	1464202	103271243	37942188	388	94392											
OR13C2	392376	broad.mit.edu	37	chr9	107367587	107367587	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcacacactctgttgtccCcatggccaagccgaggaaca	9	14	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107367587	T	T	107367587	3	4	94	1	0	0	0	0	1	0	0	0	11028	623	22	4	637	4	OR13C2	9	107367587	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	4096344	107367587	33845844	389	94393											
EPB41L4B	54566	broad.mit.edu	37	chr9	111956698	111956698	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcggttactaaaagcacaTgaagctctgctcattacaat	7	10	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111956698	A	A	111956698	1	1	94	0	1	0	0	0	0	0	0	0	5198	1479	51	5		5	EPB41L4B	9	111956698	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	4589111	111956698	29256733	390	94394											
BSPRY	54836	broad.mit.edu	37	chr9	116116511	116116511	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgccacaagcgttgtttGtgttgcagaacaagattgtg	12	6	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116116511	A	A	116116511	1	1	94	0	1	0	0	0	0	0	0	0	1541	1392	48	4		4	BSPRY	9	116116511	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	4159813	116116511	25096920	391	94395											
AKNA	80709	broad.mit.edu	37	chr9	117139109	117139109	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcagcggcctgccctgCcgcgttggcctgggctgggg	19	14	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117139109	G	G	117139109	2	3	94	1	0	0	0	0	0	0	0	1	463	726	26	4		4	AKNA	9	117139109	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	1022598	117139109	24074322	392	94396											
PAPPA	5069	broad.mit.edu	37	chr9	119097409	119097409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagccgagtggagacagtGtgattttgaagctgggtagc	16	5	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119097409	T	T	119097409	1	4	94	0	1	0	0	0	0	0	0	0	11526	1392	48	3		3	PAPPA	9	119097409	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1958300	119097409	22116022	393	94397											
ANGPTL2	23452	broad.mit.edu	37	chr9	129851286	129851286	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgagtaagagcctcctcGgaactcagcccagtagactc	11	12	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129851286	A	A	129851286	4	1	94	1	0	0	0	0	0	1	0	0	614	1124	39	4	71	4	ANGPTL2	9	129851286	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	10753877	129851286	11362145	394	94398											
DBH	1621	broad.mit.edu	37	chr9	136501597	136501597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctggtcatcctggtggCcgcactgcagggctcggctc	13	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136501597	A	A	136501597	3	1	94	1	0	0	0	0	1	0	0	0	4283	739	26	3	106	3	DBH	9	136501597	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	6650311	136501597	4711834	395	94399											
KCNT1	57582	broad.mit.edu	37	chr9	138670418	138670418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaagtctggggtgaccCcgaccgcaggtggggtgggg	18	10	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138670418	A	A	138670418	1	1	94	0	1	0	0	0	0	0	0	0	8161	638	22	2		2	KCNT1	9	138670418	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2168821	138670418	2543013	396	94400											
CAMSAP1	157922	broad.mit.edu	37	chr9	138714662	138714662	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcggtctcccttccccCcgttcatcctccttggtgat	6	19	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138714662	G	G	138714662	2	3	94	1	0	0	0	0	0	0	0	1	2637	610	22	4		4	CAMSAP1	9	138714662	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	44244	138714662	2498769	397	94401											
NPDC1	56654	broad.mit.edu	37	chr9	139934536	139934536	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgcctgggtggggggggatCgctgggtcctccccatgccc	17	13	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139934536	T	T	139934536	1	4	94	0	1	0	0	0	0	0	0	0	10668	899	31	4		4	NPDC1	9	139934536	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1219874	139934536	1278895	398	94402											
ZMYND19	116225	broad.mit.edu	37	chr9	140482165	140482165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagacagcttggaaacacCcaccacagcagctcatgaag	9	13	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140482165	A	A	140482165	1	1	94	0	1	0	0	0	0	0	0	0	17836	638	22	2		2	ZMYND19	9	140482165	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	547629	140482165	731266	399	94403											
PFKFB3	5209	broad.mit.edu	37	chr10	6255623	6255623	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accaactcccccaccgtcatCgtcatggtgggcctccccgc	8	20	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6255623	A	A	6255623	2	1	94	1	0	0	0	0	0	0	0	1	11857	874	31	3		3	PFKFB3	10	6255623	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08		6255623	129279124	400	94404											
ITIH2	3698	broad.mit.edu	37	chr10	7759586	7759586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgggggctttcaccttTaggagcagcgctcttgatat	12	8	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7759586	C	C	7759586	1	2	94	0	1	0	0	0	0	0	0	0	7974	1769	61	5		5	ITIH2	10	7759586	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	1503963	7759586	127775161	401	94405											
CUBN	8029	broad.mit.edu	37	chr10	16867009	16867009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcggaatgcggatggacGccgtgcataatcagcatgaa	12	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16867009	T	T	16867009	3	4	94	1	0	0	0	0	1	0	0	0	4084	1087	38	3	38	3	CUBN	10	16867009	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	9107423	16867009	118667738	402	94406											
CUBN	8029	broad.mit.edu	37	chr10	16957317	16957317	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctctgtcaagacaacaggAaaacatgaataaaaatgaac	6	7	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16957317	G	G	16957317	1	3	94	0	1	0	0	0	0	0	0	0	4084	261	9	5		5	CUBN	10	16957317	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	90308	16957317	118577430	403	94407											
CUBN	8029	broad.mit.edu	37	chr10	17157611	17157611	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacaactgttggttacacaAgagcacaatgtcagggcacg	11	9	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17157611	G	G	17157611	1	3	94	0	1	0	0	0	0	0	0	0	4084	87	3	5		5	CUBN	10	17157611	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	200294	17157611	118377136	404	94408											
ST8SIA6	338596	broad.mit.edu	37	chr10	17432489	17432489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattctgaaaataaaaccCttgttgtaaaaggaaattaa	6	5	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17432489	A	A	17432489	1	1	94	0	1	0	0	0	0	0	0	0	15354	696	24	2		2	ST8SIA6	10	17432489	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	274878	17432489	118102258	405	94409											
MRC1	4360	broad.mit.edu	37	chr10	17875916	17875916	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttagaagtcaacagcacaAgtgtttatagatgttatgac	8	6	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17875916	T	T	17875916	1	4	94	0	1	0	0	0	0	0	0	0	9850	87	3	5		5	MRC1	10	17875916	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	443427	17875916	117658831	406	94410											
ARHGAP21	57584	broad.mit.edu	37	chr10	24884819	24884819	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaaataagcaaacttacatCatcttgtatatcaatatcag	3	8	5	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24884819	A	A	24884819	3	1	94	1	0	0	0	0	1	0	0	0	873	826	29	3	2281	3	ARHGAP21	10	24884819	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	7008903	24884819	110649928	407	94411											
ZEB1	6935	broad.mit.edu	37	chr10	31809806	31809806	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccagaagatcttactgttAagtctgagaaggacaaaagc	9	7	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31809806	C	C	31809806	3	2	94	1	0	0	0	0	1	0	0	0	17749	363	13	5	1583	5	ZEB1	10	31809806	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	6924987	31809806	103724941	408	94412											
CUL2	8453	broad.mit.edu	37	chr10	35333791	35333791	+	Missense_Mutation	SNP	C	A	A													ggtttgggtcttctccaccaCgatcactaaaacaaggtata							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35333791	A	A	35333791	3	1	94	1	0	0	0	0	1	0	0	0	4088	536	19	3	1785	3	CUL2	10	35333791	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	3523985	35333791	100200956	409	94413	421	2									
CUL2	8453	broad.mit.edu	37	chr10	35333797	35333797	+	Splice_Site	SNP	C	A	A													ggtcttctccaccacgatcaCtaaaacaaggtataacacaa							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35333797	A	A	35333797	5	1	94	1	0	0	0	0	0	0	1	0	4088	579	20	3	1791	3	CUL2	10	35333797	Splice_Site	SNP	C	TCGA-35-4123-01A-01D-1105-08	6	35333797	100200950	410	94414	421	2									
CSTF2T	23283	broad.mit.edu	37	chr10	53458658	53458658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggcagagcccagggcCagggccagggccagggccag	18	14	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53458658	A	A	53458658	3	1	94	1	0	0	0	0	1	0	0	0	4019	594	21	2	1202	2	CSTF2T	10	53458658	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	18124861	53458658	82076089	411	94415											
PRKG1	5592	broad.mit.edu	37	chr10	53822338	53822338	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaccgagtgaagacccagtCtttcttagaactttaggaaa	8	9	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53822338	A	A	53822338	2	1	94	1	0	0	0	0	0	0	0	1	12628	900	32	3		3	PRKG1	10	53822338	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	363680	53822338	81712409	412	94416											
PCDH15	65217	broad.mit.edu	37	chr10	55780262	55780262	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcatgcgttagtgcctAggacagcatcaatttaacga	10	8	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55780262	G	G	55780262	1	3	94	0	1	0	0	0	0	0	0	0	11605	435	15	5		5	PCDH15	10	55780262	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1957924	55780262	79754485	413	94417											
JMJD1C	221037	broad.mit.edu	37	chr10	64945331	64945331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtttcaaaccttgctggCatcatagtcttgaagtcttc	7	9	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64945331	A	A	64945331	3	1	94	1	0	0	0	0	1	0	0	0	8020	710	25	3	828	3	JMJD1C	10	64945331	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	9165069	64945331	70589416	414	94418											
JMJD1C	221037	broad.mit.edu	37	chr10	64952769	64952769	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgactgggattctggaGgagttaacttgttatctgtg	15	4	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64952769	A	A	64952769	3	1	94	1	0	0	0	0	1	0	0	0	8020	1000	35	4	1661	4	JMJD1C	10	64952769	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	7438	64952769	70581978	415	94419											
SLC25A16	8034	broad.mit.edu	37	chr10	70263487	70263487	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgaattaaatgagatatTttttaaatgctgcccatttc	5	7	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70263487	C	C	70263487	1	2	94	0	1	0	0	0	0	0	0	0	14592	1856	64	5		5	SLC25A16	10	70263487	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	5310718	70263487	65271260	416	94420											
KIAA1274	27143	broad.mit.edu	37	chr10	72291088	72291088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggaacctgtgcttttcCtgcgtgcagatgaggacttt	14	8	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72291088	A	A	72291088	3	1	94	1	0	0	0	0	1	0	0	0	8290	680	24	2	525	2	KIAA1274	10	72291088	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2027601	72291088	63243659	417	94421											
NRG3	10718	broad.mit.edu	37	chr10	84498364	84498364	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctaccaaggagtccgttgtGatcaatttctgccgaaaact	9	10	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84498364	A	A	84498364	3	1	94	1	0	0	0	0	1	0	0	0	10744	1290	45	4	1163	4	NRG3	10	84498364	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	12207276	84498364	51036383	418	94422											
MMRN2	79812	broad.mit.edu	37	chr10	88703608	88703608	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgtgcaggcggtcctcCacgtcctgtcgcagctgacc	14	15	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88703608	A	A	88703608	2	1	94	1	0	0	0	0	0	0	0	1	9765	581	21	2		2	MMRN2	10	88703608	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	4205244	88703608	46831139	419	94423											
PDE6C	5146	broad.mit.edu	37	chr10	95380423	95380423	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttcatggacaagcaaaCtgggtatgtcactaagaacc	9	9	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95380423	A	A	95380423	3	1	94	1	0	0	0	0	1	0	0	0	11741	565	20	3	521	3	PDE6C	10	95380423	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	6676815	95380423	40154324	420	94424											
PDE6C	5146	broad.mit.edu	37	chr10	95394518	95394518	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttctcgtttgtagaaaGgacctgtagacgaaactggt	10	9	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95394518	T	T	95394518	4	4	94	1	0	0	0	0	0	1	0	0	11741	1001	35	2	1157	2	PDE6C	10	95394518	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	14095	95394518	40140229	421	94425											
TLL2	7093	broad.mit.edu	37	chr10	98180606	98180606	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggacagacaggccagccGtgctagaagcatgcagagac	13	11	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98180606	A	A	98180606	1	1	94	0	1	0	0	0	0	0	0	0	16069	1160	40	4		4	TLL2	10	98180606	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2786088	98180606	37354141	422	94426											
C10orf28	27291	broad.mit.edu	37	chr10	99991416	99991416	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaagaatttcatactgaaGaccttctacgggttttctgc	7	11	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99991416	T	T	99991416	3	4	94	1	0	0	0	0	1	0	0	0	1612	942	33	3	1939	3	C10orf28	10	99991416	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1810810	99991416	35543331	423	94427											
CHUK	1147	broad.mit.edu	37	chr10	101982738	101982738	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacattggcatggttcaacCtaataagaaagaaaaacatt	6	7	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101982738	A	A	101982738	5	1	94	1	0	0	0	0	0	0	1	0	3447	695	24	2	2113	2	CHUK	10	101982738	Splice_Site	SNP	C	TCGA-35-4123-01A-01D-1105-08	1991322	101982738	33552009	424	94428											
CALHM1	255022	broad.mit.edu	37	chr10	105218594	105218594	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctgcccactgggtgccCacctcatgactcgggctctc	9	19	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105218594	A	A	105218594	1	1	94	0	1	0	0	0	0	0	0	0	2608	609	21	2		2	CALHM1	10	105218594	5'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	3235856	105218594	30316153	425	94429											
SORCS3	22986	broad.mit.edu	37	chr10	106924246	106924246	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgactttgtaatttcaaaAcatttgaagcagctgttcag	7	6	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106924246	T	T	106924246	1	4	94	0	1	0	0	0	0	0	0	0	15046	58	2	5		5	SORCS3	10	106924246	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1705652	106924246	28610501	426	94430											
SORCS1	114815	broad.mit.edu	37	chr10	108459106	108459106	+	Frame_Shift_Del	DEL	C	-	-													attctggttccattcttggaCcgctgcgaacacctgattct							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108459106	-	-	108459106	7	5	94	1	0	1	0	1	0	0	0	0	15044	507	18	0	2533	0	SORCS1	10	108459106	Frame_Shift_Del	DEL	C	TCGA-35-4123-01A-01D-1105-08	1534860	108459106	27075641	427	94431											
HSPA12A	259217	broad.mit.edu	37	chr10	118510677	118510677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactagtagtgggtgacaatGgcaaaactgtcccaaaatgt	10	7	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118510677	T	T	118510677	1	4	94	0	1	0	0	0	0	0	0	0	7473	1363	47	2		2	HSPA12A	10	118510677	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	10051571	118510677	17024070	428	94432											
SEC23IP	11196	broad.mit.edu	37	chr10	121691670	121691671	+	Nonsense_Mutation	DNP	GG	CT	CT													aaagagagtctctctcgtatGggatctgatttgaagcaggg							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	121691671	CT	CT	121691670	4	2	94	1	0	0	0	0	0	1	0	0	14106	1348	47	4	2660	4	SEC23IP	10	121691670	Nonsense_Mutation	DNP	GG	TCGA-35-4123-01A-01D-1105-08	3180993	121691670	13843077	429	94433											
DHX32	55760	broad.mit.edu	37	chr10	127555505	127555505	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgctccttcagaattgtAgaacctaagccaagaatcat	6	9	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127555505	G	G	127555505	1	3	94	0	1	0	0	0	0	0	0	0	4545	435	15	5		5	DHX32	10	127555505	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	5863835	127555505	7979242	430	94434											
CYP2E1	1571	broad.mit.edu	37	chr10	135371582	135371582	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagaggcaagctgggacaGgtttcaaaaggcttcagctg	15	7	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135371582	T	T	135371582	1	4	94	0	1	0	0	0	0	0	0	0	4203	1015	35	2		2	CYP2E1	10	135371582	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	7816077	135371582	163165	431	94435											
IFITM5	387733	broad.mit.edu	37	chr11	299433	299433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgagggctgtgtgggCaccggccttgctgggcgtgg	20	9	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	299433	A	A	299433	3	1	94	1	0	0	0	0	1	0	0	0	7599	710	25	3	348	3	IFITM5	11	299433	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08		299433	134707083	432	94436											
IGF2	3481	broad.mit.edu	37	chr11	2155357	2155357	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgagacagggagacaAgggcaggagaggagaagacg	19	6	0	5			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2155357	G	G	2155357	1	3	94	0	1	0	0	0	0	0	0	0	7642	87	3	5		5	IGF2	11	2155357	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1855924	2155357	132851159	433	94437											
STIM1	6786	broad.mit.edu	37	chr11	4103493	4103493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaggcccttcagaagtGgctgcagctgacacatgagg	13	11	1	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4103493	T	T	4103493	3	4	94	1	0	0	0	0	1	0	0	0	15401	1357	47	2	1079	2	STIM1	11	4103493	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1948136	4103493	130903023	434	94438											
OR52I2	143502	broad.mit.edu	37	chr11	4608223	4608223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttggctggctatctcaCtgagtgccatgtacatcata	8	10	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4608223	A	A	4608223	3	1	94	1	0	0	0	0	1	0	0	0	11215	564	20	3	183	3	OR52I2	11	4608223	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	504730	4608223	130398293	435	94439											
OR52H1	390067	broad.mit.edu	37	chr11	5566115	5566115	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcacatctgagatgaccgtCatgatgggaacacaaaagcc	9	10	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5566115	A	A	5566115	3	1	94	1	0	0	0	0	1	0	0	0	11213	826	29	3	326	3	OR52H1	11	5566115	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	957892	5566115	129440401	436	94440											
OR52N4	390072	broad.mit.edu	37	chr11	5776387	5776387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctattcaactatcctcacCaatcctgtaattgcaaaggt	5	12	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5776387	A	A	5776387	2	1	94	1	0	0	0	0	0	0	0	1	11223	581	21	2		2	OR52N4	11	5776387	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	210272	5776387	129230129	437	94441											
OR56A3	390083	broad.mit.edu	37	chr11	5969347	5969347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcctcttcttcagcacCatccttctggtttttgtcct	4	15	5	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5969347	A	A	5969347	2	1	94	1	0	0	0	0	0	0	0	1	11228	581	21	2		2	OR56A3	11	5969347	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	192960	5969347	129037169	438	94442											
FAM160A2	84067	broad.mit.edu	37	chr11	6239874	6239874	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgaggtgggctgggggcgTggtgccgacaacagcgtggg	22	8	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6239874	A	A	6239874	3	1	94	1	0	0	0	0	1	0	0	0	5515	1696	59	5	1589	5	FAM160A2	11	6239874	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	270527	6239874	128766642	439	94443											
DCHS1	8642	broad.mit.edu	37	chr11	6652473	6652473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggaagatgagggcttgGggcccagagctgggcaggcc	19	9	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6652473	T	T	6652473	1	4	94	0	1	0	0	0	0	0	0	0	4320	1247	43	2		2	DCHS1	11	6652473	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	412599	6652473	128354043	440	94444											
OR2AG1	144125	broad.mit.edu	37	chr11	6806979	6806979	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaggggaggaagaaagcCcttgtcacctgctcttccca	11	11	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6806979	A	A	6806979	2	1	94	1	0	0	0	0	0	0	0	1	11078	610	22	2		2	OR2AG1	11	6806979	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	154506	6806979	128199537	441	94445											
ZNF143	7702	broad.mit.edu	37	chr11	9534020	9534020	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagatgttcttaaaggGtcccagattacgtatgttac	11	6	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9534020	T	T	9534020	2	4	94	1	0	0	0	0	0	0	0	1	17858	1248	44	3		3	ZNF143	11	9534020	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	2727041	9534020	125472496	442	94446											
PARVA	55742	broad.mit.edu	37	chr11	12499565	12499565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggatcacctacttgtagctAgaaggagttattctcagttt	9	7	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12499565	G	G	12499565	1	3	94	0	1	0	0	0	0	0	0	0	11562	435	15	5		5	PARVA	11	12499565	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2965545	12499565	122506951	443	94447											
INSC	387755	broad.mit.edu	37	chr11	15198682	15198682	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagctgctaatggagaaatGctcggagctctcggcagtca	13	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15198682	C	C	15198682	3	2	94	1	0	0	0	0	1	0	0	0	7834	1319	46	4	583	4	INSC	11	15198682	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2699117	15198682	119807834	444	94448											
SAAL1	113174	broad.mit.edu	37	chr11	18108622	18108622	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaataaagaggacaaataAagcagtactttaaaatcagc	6	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18108622	C	C	18108622	1	2	94	0	1	0	0	0	0	0	0	0	13912	29	1	5		5	SAAL1	11	18108622	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2909940	18108622	116897894	445	94449											
NELL1	4745	broad.mit.edu	37	chr11	20939724	20939724	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacctgtctcttctattatCaaggggatcatccaagatgg	8	11	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20939724	A	A	20939724	1	1	94	0	1	0	0	0	0	0	0	0	10428	841	29	3		3	NELL1	11	20939724	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2831102	20939724	114066792	446	94450											
GAS2	2620	broad.mit.edu	37	chr11	22696347	22696347	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcatgatgacaacattttGtgagagaagtctgtataaaa	9	4	2	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22696347	C	C	22696347	1	2	94	0	1	0	0	0	0	0	0	0	6307	1392	48	4		4	GAS2	11	22696347	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1756623	22696347	112310169	447	94451											
LUZP2	338645	broad.mit.edu	37	chr11	24998134	24998134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatttatctcttattttaCaggcgcagcagcttactgat	7	8	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24998134	A	A	24998134	1	1	94	0	1	0	0	0	0	0	0	0	9174	493	17	3		3	LUZP2	11	24998134	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2301787	24998134	110008382	448	94452											
PAMR1	25891	broad.mit.edu	37	chr11	35492424	35492424	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctggacagtcctgagaccGctgggctcattcaaggccag	12	14	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35492424	C	C	35492424	1	2	94	0	1	0	0	0	0	0	0	0	11507	1102	38	4		4	PAMR1	11	35492424	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	10494290	35492424	99514092	449	94453											
LDLRAD3	143458	broad.mit.edu	37	chr11	36057809	36057809	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagtgccgtgagtggcCtggccctttgctggggtggg	20	8	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36057809	A	A	36057809	1	1	94	0	1	0	0	0	0	0	0	0	8779	696	24	2		2	LDLRAD3	11	36057809	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	565385	36057809	98948707	450	94454											
F2	2147	broad.mit.edu	37	chr11	46750885	46750885	+	Intron	DEL	C	-	-													ggcgttggggccaggcggctCctgtgggggttggctctcac							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46750885	-	-	46750885	6	5	94	0	1	1	0	1	0	0	0	0	5385	870	30	0		0	F2	11	46750885	Intron	DEL	C	TCGA-35-4123-01A-01D-1105-08	10693076	46750885	88255631	451	94455											
TRIM48	79097	broad.mit.edu	37	chr11	55035198	55035198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaatccatctccctacCtttatttccatgatgtgttt	5	11	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55035198	A	A	55035198	1	1	94	0	1	0	0	0	0	0	0	0	16648	696	24	2		2	TRIM48	11	55035198	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	8284313	55035198	79971318	452	94456											
OR4A16	81327	broad.mit.edu	37	chr11	55111191	55111191	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctgtggccccaatgttaTtgaccactctgtctgtgaca	8	11	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55111191	C	C	55111191	3	2	94	1	0	0	0	0	1	0	0	0	11135	1493	52	5	517	5	OR4A16	11	55111191	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	75993	55111191	79895325	453	94457											
OR5AS1	219447	broad.mit.edu	37	chr11	55798258	55798258	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcagcaatggcttatgacCgctatgcagccatctgcaac	10	12	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55798258	T	T	55798258	3	4	94	1	0	0	0	0	1	0	0	0	11240	652	23	4	366	4	OR5AS1	11	55798258	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	687067	55798258	79208258	454	94458											
OR9G9	504191	broad.mit.edu	37	chr11	56468505	56468505	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccccgcagtgctcatcctGgcctcctacctctttatcat	6	17	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56468505	T	T	56468505	2	4	94	1	0	0	0	0	0	0	0	1	11346	1335	47	2		2	OR9G9	11	56468505	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	670247	56468505	78538011	455	94459											
SSRP1	6749	broad.mit.edu	37	chr11	57099813	57099813	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctaatggcacacctgtctCctgcctggacagtggtagga	11	11	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57099813	G	G	57099813	1	3	94	0	1	0	0	0	0	0	0	0	15312	870	30	4		4	SSRP1	11	57099813	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	631308	57099813	77906703	456	94460											
PRG3	10394	broad.mit.edu	37	chr11	57146032	57146032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtacaagccatctccagCacatcattgcctgccacatt	5	16	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57146032	A	A	57146032	1	1	94	0	1	0	0	0	0	0	0	0	12586	725	25	3		3	PRG3	11	57146032	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	46219	57146032	77860484	457	94461											
CNTF	1270	broad.mit.edu	37	chr11	58391556	58391556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctggactctgcggatgGgatgccagtggcaagcactg	14	11	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58391556	T	T	58391556	3	4	94	1	0	0	0	0	1	0	0	0	3669	1232	43	2	170	2	CNTF	11	58391556	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1245524	58391556	76614960	458	94462											
OR4D6	219983	broad.mit.edu	37	chr11	59224871	59224871	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggtggccttggtggtGgcttcttgggtgagtggtgg	22	4	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59224871	A	A	59224871	2	1	94	1	0	0	0	0	0	0	0	1	11152	1335	47	4		4	OR4D6	11	59224871	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	833315	59224871	75781645	459	94463											
PLAC1L	219990	broad.mit.edu	37	chr11	59814626	59814626	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttttcatagcaaaaataTagttggtgtatatctctcct	5	6	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59814626	C	C	59814626	1	2	94	0	1	0	0	0	0	0	0	0	12108	1421	49	5		5	PLAC1L	11	59814626	3'UTR	SNP	T	TCGA-35-4123-01A-01D-1105-08	589755	59814626	75191890	460	94464											
CD6	923	broad.mit.edu	37	chr11	60780728	60780728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatatgcatttattgagcgCctaatatacaccacacactt	4	11	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60780728	A	A	60780728	1	1	94	0	1	0	0	0	0	0	0	0	3058	754	26	3		3	CD6	11	60780728	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	966102	60780728	74225788	461	94465											
VWCE	220001	broad.mit.edu	37	chr11	61034797	61034797	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcaccctgggcaggactgGagggagctgacttccaccat	14	12	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61034797	T	T	61034797	1	4	94	0	1	0	0	0	0	0	0	0	17372	1189	41	3		3	VWCE	11	61034797	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	254069	61034797	73971719	462	94466											
SLC22A6	9356	broad.mit.edu	37	chr11	62751813	62751813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagtcacgatggtagatGggaaggtgctgttgtcatag	14	7	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62751813	T	T	62751813	3	4	94	1	0	0	0	0	1	0	0	0	14572	1348	47	2	1381	2	SLC22A6	11	62751813	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1717016	62751813	72254703	463	94467											
FERMT3	83706	broad.mit.edu	37	chr11	63987585	63987585	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtttcctcctggagaccgggGaagatgccctctgtcctgag	13	12	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63987585	C	C	63987585	1	2	94	0	1	0	0	0	0	0	0	0	5876	1189	41	4		4	FERMT3	11	63987585	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1235772	63987585	71018931	464	94468											
NRXN2	9379	broad.mit.edu	37	chr11	64390552	64390552	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatggtcagctggcggccTtgcaggagtggaagggggtg	20	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64390552	A	A	64390552	5	1	94	1	0	0	0	0	0	0	1	0	10761	1623	56	5	1304	5	NRXN2	11	64390552	Splice_Site	SNP	T	TCGA-35-4123-01A-01D-1105-08	402967	64390552	70615964	465	94469											
NRXN2	9379	broad.mit.edu	37	chr11	64418893	64418893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcttgaaggtgacgggatCggccacgatggcacgcaggc	15	11	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64418893	A	A	64418893	3	1	94	1	0	0	0	0	1	0	0	0	10761	884	31	3	2695	3	NRXN2	11	64418893	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	28341	64418893	70587623	466	94470											
MYEOV	26579	broad.mit.edu	37	chr11	69063537	69063537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctctgcgctcacctgGgcgaggacttctggccggtg	16	12	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69063537	T	T	69063537	3	4	94	1	0	0	0	0	1	0	0	0	10119	1232	43	2	626	2	MYEOV	11	69063537	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	4644644	69063537	65942979	467	94471											
PPFIA1	8500	broad.mit.edu	37	chr11	70118299	70118299	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgatgtgcgaggtgatgccGaccatcagcgaagcagaagg	15	8	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70118299	T	T	70118299	2	4	94	1	0	0	0	0	0	0	0	1	12405	1045	37	3		3	PPFIA1	11	70118299	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	1054762	70118299	64888217	468	94472											
CTTN	2017	broad.mit.edu	37	chr11	70256086	70256086	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagtggcccgcggctgcCtatgccaggctcctggtgtg	16	12	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70256086	T	T	70256086	1	4	94	0	1	0	0	0	0	0	0	0	4078	696	24	4		4	CTTN	11	70256086	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	137787	70256086	64750430	469	94473											
MYO7A	4647	broad.mit.edu	37	chr11	76886414	76886414	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgtgttccccatcctcactCcagggcgacctccgcgggac	10	17	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76886414	G	G	76886414	1	3	94	0	1	0	0	0	0	0	0	0	10176	870	30	4		4	MYO7A	11	76886414	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	6630328	76886414	58120102	470	94474											
PRCP	5547	broad.mit.edu	37	chr11	82611191	82611191	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcaaggggtgtgaattTcgaggtaggctccgttgccc	15	9	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82611191	A	A	82611191	1	1	94	0	1	0	0	0	0	0	0	0	12555	1798	62	5		5	PRCP	11	82611191	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	5724777	82611191	52395325	471	94475											
DLG2	1740	broad.mit.edu	37	chr11	83676300	83676300	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtacaagtagaacactttgtCaacagttttatagaattcca	6	7	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83676300	A	A	83676300	1	1	94	0	1	0	0	0	0	0	0	0	4595	841	29	3		3	DLG2	11	83676300	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1065109	83676300	51330216	472	94476											
CCDC81	60494	broad.mit.edu	37	chr11	86106346	86106346	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcctggacctcagcctagAtgtaaccttgctctgttgct	9	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86106346	G	G	86106346	1	3	94	0	1	0	0	0	0	0	0	0	2883	348	12	5		5	CCDC81	11	86106346	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2430046	86106346	48900170	473	94477											
TMEM135	65084	broad.mit.edu	37	chr11	86806456	86806456	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacttgtgtattagagttcAgcactaactctctctcttgg	7	9	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86806456	T	T	86806456	1	4	94	0	1	0	0	0	0	0	0	0	16174	203	7	5		5	TMEM135	11	86806456	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	700110	86806456	48200060	474	94478											
FAT3	120114	broad.mit.edu	37	chr11	92086706	92086706	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaatttcagcaaccactGtatgatgcttatgtgaatga	8	8	1	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92086706	T	T	92086706	2	4	94	1	0	0	0	0	0	0	0	1	5748	1364	48	3		3	FAT3	11	92086706	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	5280250	92086706	42919810	475	94479											
FAT3	120114	broad.mit.edu	37	chr11	92535112	92535112	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttttcattatgtgcactgCtttataaagaaagatggaag	9	4	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92535112	T	T	92535112	1	4	94	0	1	0	0	0	0	0	0	0	5748	812	28	4		4	FAT3	11	92535112	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	448406	92535112	42471404	476	94480											
FAT3	120114	broad.mit.edu	37	chr11	92616483	92616483	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgtgcagtgtggccccCaacctccccgccgtgtcacc	11	18	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92616483	G	G	92616483	2	3	94	1	0	0	0	0	0	0	0	1	5748	581	21	4		4	FAT3	11	92616483	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	81371	92616483	42390033	477	94481											
PGR	5241	broad.mit.edu	37	chr11	100999187	100999187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcactggggccccggaCcagtgagggctctcagaggc	16	13	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100999187	A	A	100999187	3	1	94	1	0	0	0	0	1	0	0	0	11900	508	18	3	2218	3	PGR	11	100999187	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	8382704	100999187	34007329	478	94482											
TRPC6	7225	broad.mit.edu	37	chr11	101353723	101353723	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccatccatgagaagcaGgatgttttcatcctgaacag	8	10	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101353723	T	T	101353723	2	4	94	1	0	0	0	0	0	0	0	1	16708	987	35	2		2	TRPC6	11	101353723	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	354536	101353723	33652793	479	94483											
MMP27	64066	broad.mit.edu	37	chr11	102576439	102576439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaacagaagcagaaggcGcttcattcctctctttcttc	6	12	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102576439	T	T	102576439	3	4	94	1	0	0	0	0	1	0	0	0	9758	1087	38	3	1574	3	MMP27	11	102576439	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1222716	102576439	32430077	480	94484											
MMP13	4322	broad.mit.edu	37	chr11	102818698	102818698	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcacttatcttcttaactTcttttggaagacccagttca	5	11	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102818698	C	C	102818698	3	2	94	1	0	0	0	0	1	0	0	0	9745	1783	62	5	294	5	MMP13	11	102818698	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	242259	102818698	32187818	481	94485											
GUCY1A2	2977	broad.mit.edu	37	chr11	106810239	106810239	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggttctaatcacaaacgGggtagacagtcgcagcagga	12	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106810239	A	A	106810239	3	1	94	1	0	0	0	0	1	0	0	0	6958	1232	43	4	1065	4	GUCY1A2	11	106810239	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	3991541	106810239	28196277	482	94486											
ACAT1	38	broad.mit.edu	37	chr11	108012461	108012461	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgaagcataagaaaaaatTgagccagtataccatatcta	6	6	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108012461	A	A	108012461	1	1	94	0	1	0	0	0	0	0	0	0	121	1827	63	5		5	ACAT1	11	108012461	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	1202222	108012461	26994055	483	94487											
C11orf87	399947	broad.mit.edu	37	chr11	109294974	109294974	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtctagcccctctcgttcCccgtcctcgtttccagcatc	6	19	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109294974	A	A	109294974	1	1	94	0	1	0	0	0	0	0	0	0	1681	638	22	2		2	C11orf87	11	109294974	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	1282513	109294974	25711542	484	94488											
RDX	5962	broad.mit.edu	37	chr11	110108242	110108242	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcctgattcttcatctggTcggcagcttgttttgctatg	10	10	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110108242	A	A	110108242	3	1	94	1	0	0	0	0	1	0	0	0	13306	1667	58	5	541	5	RDX	11	110108242	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	813268	110108242	24898274	485	94489											
HTR3B	9177	broad.mit.edu	37	chr11	113803683	113803683	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacgtagacctggcctttctGaggagcccagaagacattca	11	11	2	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113803683	T	T	113803683	2	4	94	1	0	0	0	0	0	0	0	1	7515	1277	45	3		3	HTR3B	11	113803683	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	3695441	113803683	21202833	486	94490											
IL10RA	3587	broad.mit.edu	37	chr11	117864126	117864126	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtgccgggaaacttcacgGtatggggttccccaaggccc	14	12	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117864126	C	C	117864126	5	2	94	1	0	0	0	0	0	0	1	0	7690	1275	44	4	552	4	IL10RA	11	117864126	Splice_Site	SNP	G	TCGA-35-4123-01A-01D-1105-08	4060443	117864126	17142390	487	94491											
TMPRSS4	56649	broad.mit.edu	37	chr11	117979478	117979478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattcccgaggtattgggaGgggacttgaattaacagctt	12	7	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117979478	T	T	117979478	1	4	94	0	1	0	0	0	0	0	0	0	16372	1015	35	2		2	TMPRSS4	11	117979478	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	115352	117979478	17027038	488	94492											
ARHGEF12	23365	broad.mit.edu	37	chr11	120316256	120316256	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcaggttttatctgtcAcatggtgactagtcgatcac	9	9	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120316256	T	T	120316256	1	4	94	0	1	0	0	0	0	0	0	0	899	174	6	5		5	ARHGEF12	11	120316256	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2336778	120316256	14690260	489	94493											
SCN3B	55800	broad.mit.edu	37	chr11	123524362	123524362	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagaggcaagccagccagAgctcttttctgtcaccaacg	9	14	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123524362	T	T	123524362	1	4	94	0	1	0	0	0	0	0	0	0	14032	319	11	5		5	SCN3B	11	123524362	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	3208106	123524362	11482154	490	94494											
OR8B8	26493	broad.mit.edu	37	chr11	124310583	124310583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggggagacatggtgacCatgtacaacagtgggttaca	13	8	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124310583	A	A	124310583	3	1	94	1	0	0	0	0	1	0	0	0	11324	594	21	2	539	2	OR8B8	11	124310583	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	786221	124310583	10695933	491	94495											
FLI1	2313	broad.mit.edu	37	chr11	128642980	128642980	+	Intron	DEL	G	-	-													gttcgtgttgggcagatgccGccggagcagcatcgtggggc							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128642980	-	-	128642980	6	5	94	0	1	1	0	1	0	0	0	0	5981	1102	38	0		0	FLI1	11	128642980	Intron	DEL	G	TCGA-35-4123-01A-01D-1105-08	4332397	128642980	6363536	492	94496											
IGSF9B	22997	broad.mit.edu	37	chr11	133790344	133790344	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccagagacaggatgccCgggtaggccgcgggcacctg	16	14	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133790344	A	A	133790344	2	1	94	1	0	0	0	0	0	0	0	1	7676	639	23	1		1	IGSF9B	11	133790344	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	5147364	133790344	1216172	493	94497											
NCAPD3	23310	broad.mit.edu	37	chr11	134022833	134022833	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctggacactggtgggaggCgctgtttagttggctgtttt	16	7	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134022833	T	T	134022833	1	4	94	0	1	0	0	0	0	0	0	0	10301	783	27	4		4	NCAPD3	11	134022833	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	232489	134022833	983683	494	94498											
NCAPD3	23310	broad.mit.edu	37	chr11	134038953	134038953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaaactccccgaagctgCaaaggtgagagaaacaaaga	11	9	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134038953	A	A	134038953	1	1	94	0	1	0	0	0	0	0	0	0	10301	725	25	3		3	NCAPD3	11	134038953	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	16120	134038953	967563	495	94499											
WNK1	65125	broad.mit.edu	37	chr12	993807	993807	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcttatctttttgtattcCtttgcagttgctgcctctac	5	10	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	993807	T	T	993807	1	4	94	0	1	0	0	0	0	0	0	0	17504	696	24	4		4	WNK1	12	993807	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08		993807	132858088	496	94500											
PRMT8	56341	broad.mit.edu	37	chr12	3677879	3677879	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttattttccagtcatcacCatatttaagggtaaagtgga	7	7	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3677879	A	A	3677879	2	1	94	1	0	0	0	0	0	0	0	1	12648	581	21	2		2	PRMT8	12	3677879	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	2684072	3677879	130174016	497	94501											
NTF3	4908	broad.mit.edu	37	chr12	5603704	5603704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgggtcctgctgagcgaCagcacccccttggagccccc	12	19	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603704	A	A	5603704	3	1	94	1	0	0	0	0	1	0	0	0	10791	477	17	3	369	3	NTF3	12	5603704	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1925825	5603704	128248191	498	94502											
VWF	7450	broad.mit.edu	37	chr12	6130970	6130970	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactcagtctctcaactcatGtggctaggactttttaccca	6	12	4	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6130970	A	A	6130970	1	1	94	0	1	0	0	0	0	0	0	0	17373	1392	48	4		4	VWF	12	6130970	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	527266	6130970	127720925	499	94503											
CD163L1	283316	broad.mit.edu	37	chr12	7531644	7531644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcccatcgtatacaatcCcagagagaggcttcccctcc	6	17	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7531644	A	A	7531644	3	1	94	1	0	0	0	0	1	0	0	0	2998	624	22	2	2104	2	CD163L1	12	7531644	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1400674	7531644	126320251	500	94504											
AICDA	57379	broad.mit.edu	37	chr12	8757007	8757007	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcggtggggccggagagtCttctaaactgagtggatggc	18	7	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8757007	A	A	8757007	1	1	94	0	1	0	0	0	0	0	0	0	422	928	32	3		3	AICDA	12	8757007	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1225363	8757007	125094888	501	94505											
KIAA1467	57613	broad.mit.edu	37	chr12	13232874	13232874	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcagctacaggagtccacCcccaaaattggccgtgggga	12	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13232874	G	G	13232874	2	3	94	1	0	0	0	0	0	0	0	1	8305	610	22	4		4	KIAA1467	12	13232874	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	4475867	13232874	120619021	502	94506											
SLCO1B1	10599	broad.mit.edu	37	chr12	21370190	21370190	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatacaagtcttgaatttAtttttctctgcacttggagg	8	7	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21370190	C	C	21370190	3	2	94	1	0	0	0	0	1	0	0	0	14837	446	16	5	1677	5	SLCO1B1	12	21370190	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	8137316	21370190	112481705	503	94507											
ABCC9	10060	broad.mit.edu	37	chr12	21970286	21970286	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttttaaataaattaaagtaAgaagttgtggttaatcaccg	8	3	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21970286	T	T	21970286	1	4	94	0	1	0	0	0	0	0	0	0	59	87	3	5		5	ABCC9	12	21970286	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	600096	21970286	111881609	504	94508											
ABCC9	10060	broad.mit.edu	37	chr12	21997651	21997651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacttaaattgaaaaatgCatatttttattattttatgt	3	4	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21997651	A	A	21997651	1	1	94	0	1	0	0	0	0	0	0	0	59	725	25	3		3	ABCC9	12	21997651	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	27365	21997651	111854244	505	94509											
ITPR2	3709	broad.mit.edu	37	chr12	26628208	26628208	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataggatgagcaaaataatgTaaagatataaaatgtgacac	8	3	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26628208	A	A	26628208	1	1	94	0	1	0	0	0	0	0	0	0	7991	1653	57	5		5	ITPR2	12	26628208	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	4630557	26628208	107223687	506	94510											
PKP2	5318	broad.mit.edu	37	chr12	32949210	32949210	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcaggaatgatggaaacCaaatcagggagagtttcttt	12	5	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32949210	G	G	32949210	3	3	94	1	0	0	0	0	1	0	0	0	12080	593	21	4	335	4	PKP2	12	32949210	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	6321002	32949210	100902685	507	94511											
SYT10	341359	broad.mit.edu	37	chr12	33592511	33592511	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagttagccgtcttttcctCttcccgtacctctaacccct	4	18	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33592511	A	A	33592511	1	1	94	0	1	0	0	0	0	0	0	0	15585	928	32	3		3	SYT10	12	33592511	5'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	643301	33592511	100259384	508	94512											
C12orf40	283461	broad.mit.edu	37	chr12	40076706	40076707	+	Missense_Mutation	DNP	TG	AT	AT													caagtgtgattatgatagtaTgggagatacttgtgtagtca							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	40076707	AT	AT	40076706	3	1	94	1	0	0	0	0	1	0	0	0	1699	1464	51	5	1010	5	C12orf40	12	40076706	Missense_Mutation	DNP	TG	TCGA-35-4123-01A-01D-1105-08	6484195	40076706	93775189	509	94513											
ADAMTS20	80070	broad.mit.edu	37	chr12	43862482	43862482	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagcagctttgtaaaggatCacatatggtacctaaatatg	8	6	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43862482	A	A	43862482	3	1	94	1	0	0	0	0	1	0	0	0	266	826	29	3	4715	3	ADAMTS20	12	43862482	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	3785776	43862482	89989413	510	94514											
OR8S1	341568	broad.mit.edu	37	chr12	48920047	48920047	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctacatgggctgggaaacttCcttttggtcttcttatccta	8	10	2	0	rs139022158	byFrequency	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48920047	T	T	48920047	2	4	94	1	0	0	0	0	0	0	0	1	11340	854	30	4		4	OR8S1	12	48920047	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	5057565	48920047	84931848	511	94515											
MLL2	8085	broad.mit.edu	37	chr12	49435674	49435674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccctctcagttcccacgCtaatccatgctcctttctgc	4	19	2	0	rs74413240		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49435674	A	A	49435674	1	1	94	0	1	0	0	0	0	0	0	0	9714	812	28	3		3	MLL2	12	49435674	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	515627	49435674	84416221	512	94516											
TMBIM6	7009	broad.mit.edu	37	chr12	50155472	50155472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtacagatcctaatctgGttcttgcctttcaggcactg	9	10	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50155472	T	T	50155472	1	4	94	0	1	0	0	0	0	0	0	0	16106	1276	44	3		3	TMBIM6	12	50155472	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	719798	50155472	83696423	513	94517											
ACCN2	41	broad.mit.edu	37	chr12	50472281	50472281	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggatttcttcgactcctaCagcatcactgcctgccgcat	7	14	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50472281	T	T	50472281	2	4	94	1	0	0	0	0	0	0	0	1	129	489	17	4		4	ACCN2	12	50472281	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	316809	50472281	83379614	514	94518											
SLC11A2	4891	broad.mit.edu	37	chr12	51382191	51382191	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccacagtccaggaaggacaTgcccagtgcaatcaaacatt	8	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51382191	C	C	51382191	3	2	94	1	0	0	0	0	1	0	0	0	14494	1464	51	5	168	5	SLC11A2	12	51382191	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	909910	51382191	82469704	515	94519											
POU6F1	5463	broad.mit.edu	37	chr12	51584113	51584113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagacccgcactacctcacGgtcgtagttgagctccttag	9	15	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51584113	T	T	51584113	3	4	94	1	0	0	0	0	1	0	0	0	12380	1116	39	1	86	1	POU6F1	12	51584113	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	201922	51584113	82267782	516	94520											
SLC4A8	9498	broad.mit.edu	37	chr12	51865391	51865391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgatgtagagtgctaggCagtgcttacagcttctggtc	13	8	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51865391	A	A	51865391	1	1	94	0	1	0	0	0	0	0	0	0	14773	725	25	3		3	SLC4A8	12	51865391	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	281278	51865391	81986504	517	94521											
KRT82	3888	broad.mit.edu	37	chr12	52793777	52793777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagggcctcacccggcactGgtaccaggcctctgcttcgg	12	16	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52793777	T	T	52793777	3	4	94	1	0	0	0	0	1	0	0	0	8567	1357	47	2	627	2	KRT82	12	52793777	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	928386	52793777	81058118	518	94522											
KRT1	3848	broad.mit.edu	37	chr12	53069297	53069297	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgccacctccagaaccatAgctaccacctccggagccat	7	19	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53069297	T	T	53069297	3	4	94	1	0	0	0	0	1	0	0	0	8518	420	15	5	323	5	KRT1	12	53069297	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	275520	53069297	80782598	519	94523											
IGFBP6	3489	broad.mit.edu	37	chr12	53494882	53494882	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactccagactgaggtctacCgaggggctcaaacactctac	9	13	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53494882	A	A	53494882	2	1	94	1	0	0	0	0	0	0	0	1	7653	644	23	1		1	IGFBP6	12	53494882	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	425585	53494882	80357013	520	94524											
RARG	5916	broad.mit.edu	37	chr12	53608973	53608973	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcaccccagggcaggCcaagtctcagaggtcaggga	15	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53608973	T	T	53608973	1	4	94	0	1	0	0	0	0	0	0	0	13162	754	26	4		4	RARG	12	53608973	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	114091	53608973	80242922	521	94525											
OR10A7	121364	broad.mit.edu	37	chr12	55615132	55615132	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcttcttcttctttggCagttctgaatgtttccttct	5	10	6	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55615132	A	A	55615132	2	1	94	1	0	0	0	0	0	0	0	1	10989	697	25	3		3	OR10A7	12	55615132	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	2006159	55615132	78236763	522	94526											
TAC3	6866	broad.mit.edu	37	chr12	57407014	57407015	+	Intron	DNP	TG	CT	CT													ccctttcaggaaaggttggcTgagcagtgggagctggcata							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	57407015	CT	CT	57407014	1	2	94	0	1	0	0	0	0	0	0	0	15618	1595	55	5		5	TAC3	12	57407014	Intron	DNP	TG	TCGA-35-4123-01A-01D-1105-08	1791882	57407014	76444881	523	94527											
METTL1	4234	broad.mit.edu	37	chr12	58165850	58165856	+	Frame_Shift_Del	DEL	CGAGTCT	-	-													cctctgctccggccacgttcCgagtctcggctgccatgatc							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58165856	-	-	58165850	7	5	94	1	0	1	0	1	0	0	0	0	9586	652	23	0	837	0	METTL1	12	58165850	Frame_Shift_Del	DEL	CGAGTCT	TCGA-35-4123-01A-01D-1105-08	758836	58165850	75686045	524	94528											
LRRC10	376132	broad.mit.edu	37	chr12	70004184	70004184	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccggcatgcagagtcttaagGagactcagctcacagaccac	10	13	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70004184	T	T	70004184	2	4	94	1	0	0	0	0	0	0	0	1	9054	1161	41	3		3	LRRC10	12	70004184	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	11838334	70004184	63847711	525	94529											
BEST3	144453	broad.mit.edu	37	chr12	70087526	70087526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgagcgaaagatgagcaGggaggtgagattgacgtagc	16	7	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70087526	T	T	70087526	3	4	94	1	0	0	0	0	1	0	0	0	1411	991	35	2	1625	2	BEST3	12	70087526	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	83342	70087526	63764369	526	94530											
TBC1D15	64786	broad.mit.edu	37	chr12	72315330	72315330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaataaaatagcaactttaGtaagctgagggcaggcacaa	10	6	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72315330	T	T	72315330	1	4	94	0	1	0	0	0	0	0	0	0	15723	1044	36	3		3	TBC1D15	12	72315330	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2227804	72315330	61536565	527	94531											
NAV3	89795	broad.mit.edu	37	chr12	78392348	78392348	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcagcgtaacaactttGggcctagagatgttatcagt	11	7	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78392348	A	A	78392348	1	1	94	0	1	0	0	0	0	0	0	0	10279	1363	47	4		4	NAV3	12	78392348	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	6077018	78392348	55459547	528	94532											
ACSS3	79611	broad.mit.edu	37	chr12	81545902	81545902	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtaaagttaataccacatAtaaatgatatttattttatt	3	3	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81545902	G	G	81545902	1	3	94	0	1	0	0	0	0	0	0	0	190	464	16	5		5	ACSS3	12	81545902	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	3153554	81545902	52305993	529	94533											
LRRIQ1	84125	broad.mit.edu	37	chr12	85521630	85521630	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggcagctgtggtaatccAgtcatactggcgtggttacc	12	9	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85521630	T	T	85521630	3	4	94	1	0	0	0	0	1	0	0	0	9116	188	7	5	4098	5	LRRIQ1	12	85521630	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	3975728	85521630	48330265	530	94534											
HAL	3034	broad.mit.edu	37	chr12	96387882	96387882	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatacctttattttgtagcGtccctttcccaagttgacca	5	13	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96387882	A	A	96387882	3	1	94	1	0	0	0	0	1	0	0	0	7013	1145	40	4	1644	4	HAL	12	96387882	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	10866252	96387882	37464013	531	94535											
ANKS1B	56899	broad.mit.edu	37	chr12	99145080	99145080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagggcctggttagcagcCccttttcctcctgttcaagg	10	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99145080	A	A	99145080	1	1	94	0	1	0	0	0	0	0	0	0	689	638	22	2		2	ANKS1B	12	99145080	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2757198	99145080	34706815	532	94536											
ANO4	121601	broad.mit.edu	37	chr12	101436171	101436171	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgggctggtacaccggcaTgctcttcccagctgccttca	11	14	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101436171	A	A	101436171	3	1	94	1	0	0	0	0	1	0	0	0	699	1464	51	5	1012	5	ANO4	12	101436171	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	2291091	101436171	32415724	533	94537											
NUP37	79023	broad.mit.edu	37	chr12	102512147	102512147	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtagactaacctgaaaCgtacacgtgccaatgaccac	7	11	0	3	rs139625051	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102512147	A	A	102512147	2	1	94	1	0	0	0	0	0	0	0	1	10859	523	19	3		3	NUP37	12	102512147	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	1075976	102512147	31339748	534	94538											
PAH	5053	broad.mit.edu	37	chr12	103238194	103238194	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcagagcccaaactccaCagtaaaccagtaaatctgga	7	11	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103238194	A	A	103238194	3	1	94	1	0	0	0	0	1	0	0	0	11488	478	17	3	389	3	PAH	12	103238194	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	726047	103238194	30613701	535	94539											
PAH	5053	broad.mit.edu	37	chr12	103306519	103306519	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catctaactagaaaagaacaTggaagtttgctacgacatta	7	7	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103306519	A	A	103306519	1	1	94	0	1	0	0	0	0	0	0	0	11488	1479	51	5		5	PAH	12	103306519	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	68325	103306519	30545376	536	94540											
RFX4	5992	broad.mit.edu	37	chr12	107075814	107075814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaccaccagaagactcgGgacccgaggacagtcaaagt	11	11	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107075814	T	T	107075814	3	4	94	1	0	0	0	0	1	0	0	0	13373	1232	43	2	451	2	RFX4	12	107075814	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	3769295	107075814	26776081	537	94541											
BTBD11	121551	broad.mit.edu	37	chr12	107914368	107914368	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtcggagctgaggaccatcGagcagtctttgctggccacg	14	11	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107914368	T	T	107914368	4	4	94	1	0	0	0	0	0	1	0	0	1548	1059	37	3	1246	3	BTBD11	12	107914368	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	838554	107914368	25937527	538	94542											
BTBD11	121551	broad.mit.edu	37	chr12	108011250	108011250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagccagaggtcccgagtGgtgtttgttaaaaatgcaga	12	7	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108011250	T	T	108011250	1	4	94	0	1	0	0	0	0	0	0	0	1548	1363	47	2		2	BTBD11	12	108011250	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	96882	108011250	25840645	539	94543											
WSCD2	9671	broad.mit.edu	37	chr12	108618773	108618773	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactgggatctatgacgtggGagagggatgtgaccatttca	15	6	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108618773	T	T	108618773	1	4	94	0	1	0	0	0	0	0	0	0	17534	1189	41	3		3	WSCD2	12	108618773	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	607523	108618773	25233122	540	94544											
PPTC7	160760	broad.mit.edu	37	chr12	110983531	110983531	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctagttccagaaaagtatCtttcaaagttaaactaaaag	5	6	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110983531	G	G	110983531	1	3	94	0	1	0	0	0	0	0	0	0	12514	928	32	4		4	PPTC7	12	110983531	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2364758	110983531	22868364	541	94545											
RBM19	9904	broad.mit.edu	37	chr12	114385063	114385064	+	Intron	DEL	AC	-	-													acgcccgtgtccacacacatAcacacacacacacaccagcc							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114385064	-	-	114385063	6	5	94	0	1	1	0	1	0	0	0	0	13229	406	14	0		0	RBM19	12	114385063	Intron	DEL	AC	TCGA-35-4123-01A-01D-1105-08	3401532	114385063	19466832	542	94546											
TBX5	6910	broad.mit.edu	37	chr12	114841347	114841347	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaccgtcacaataaagtaGatggcaatacgctagcattt	7	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114841347	C	C	114841347	1	2	94	0	1	0	0	0	0	0	0	0	15783	957	33	4		4	TBX5	12	114841347	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	456284	114841347	19010548	543	94547											
FBXO21	23014	broad.mit.edu	37	chr12	117612321	117612321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaggttcaacacttcaaCcaggtaaacacgtggtcacg	8	10	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117612321	A	A	117612321	1	1	94	0	1	0	0	0	0	0	0	0	5790	522	18	3		3	FBXO21	12	117612321	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2770974	117612321	16239574	544	94548											
GCN1L1	10985	broad.mit.edu	37	chr12	120580689	120580689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtttctgtggtcatcttcCcagtgactcctgagatgtga	10	10	3	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120580689	A	A	120580689	3	1	94	1	0	0	0	0	1	0	0	0	6361	623	22	2	2527	2	GCN1L1	12	120580689	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2968368	120580689	13271206	545	94549											
ABCB9	23457	broad.mit.edu	37	chr12	123434444	123434444	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagggtaaaaatgccgccCcgaatacctgcggcaaatga	11	10	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123434444	T	T	123434444	2	4	94	1	0	0	0	0	0	0	0	1	48	610	22	4		4	ABCB9	12	123434444	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	2853755	123434444	10417451	546	94550											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123641456	123641456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgatcttccaaggcttcCtaggtgaaaacaatgggaaa	9	8	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123641456	A	A	123641456	1	1	94	0	1	0	0	0	0	0	0	0	9822	695	24	2		2	MPHOSPH9	12	123641456	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	207012	123641456	10210439	547	94551											
GLT1D1	144423	broad.mit.edu	37	chr12	129467431	129467431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcatttgcaaaatctccCttcatcagtgatttatgtct	7	9	4	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129467431	A	A	129467431	1	1	94	0	1	0	0	0	0	0	0	0	6529	696	24	2		2	GLT1D1	12	129467431	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	5825975	129467431	4384464	548	94552											
TMEM132D	121256	broad.mit.edu	37	chr12	129566310	129566310	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttacctgaatGgtggtcatcccaagctcctg	7	9	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129566310	T	T	129566310	2	4	94	1	0	0	0	0	0	0	0	1	16170	1335	47	2		2	TMEM132D	12	129566310	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	98879	129566310	4285585	549	94553											
TMEM132D	121256	broad.mit.edu	37	chr12	129569309	129569309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatcccgttgcatggccCaaggaggaggaaagggaagt	14	8	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129569309	A	A	129569309	1	1	94	0	1	0	0	0	0	0	0	0	16170	609	21	2		2	TMEM132D	12	129569309	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2999	129569309	4282586	550	94554											
STX2	2054	broad.mit.edu	37	chr12	131285836	131285836	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttgtgaatctgatataatCttggaaaaacaaaaataaaa	5	3	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131285836	A	A	131285836	5	1	94	1	0	0	0	0	0	0	1	0	15463	927	32	3	423	3	STX2	12	131285836	Splice_Site	SNP	C	TCGA-35-4123-01A-01D-1105-08	1716527	131285836	2566059	551	94555											
FLT1	2321	broad.mit.edu	37	chr13	28963910	28963910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggagatccgagagaaaacAgcctttttgttgcagtgctc	11	8	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28963910	T	T	28963910	1	4	94	0	1	0	0	0	0	0	0	0	5999	175	7	5		5	FLT1	13	28963910	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08		28963910	86205968	552	94556											
FLT1	2321	broad.mit.edu	37	chr13	29005449	29005449	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggaagctctcttatttttcTagaaagaaaatgtataacaa	6	6	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29005449	C	C	29005449	5	2	94	1	0	0	0	0	0	0	1	0	5999	1536	53	5	3563	5	FLT1	13	29005449	Splice_Site	SNP	T	TCGA-35-4123-01A-01D-1105-08	41539	29005449	86164429	553	94557											
POMP	51371	broad.mit.edu	37	chr13	29233235	29233235	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacgcacttccggcggatGtgggggccagccctcggaaa	16	13	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29233235	T	T	29233235	1	4	94	0	1	0	0	0	0	0	0	0	12339	1392	48	3		3	POMP	13	29233235	5'Flank	SNP	G	TCGA-35-4123-01A-01D-1105-08	227786	29233235	85936643	554	94558											
C13orf26	122046	broad.mit.edu	37	chr13	31506822	31506822	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgctgagatagctggagCcagggccccgcggccgcctc	15	15	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31506822	A	A	31506822	1	1	94	0	1	0	0	0	0	0	0	0	1735	754	26	3		3	C13orf26	13	31506822	5'Flank	SNP	C	TCGA-35-4123-01A-01D-1105-08	2273587	31506822	83663056	555	94559											
RXFP2	122042	broad.mit.edu	37	chr13	32356798	32356798	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaacccacatgctgattctCgccatgtcttacaggtttct	6	13	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32356798	A	A	32356798	1	1	94	0	1	0	0	0	0	0	0	0	13871	899	31	3		3	RXFP2	13	32356798	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	849976	32356798	82813080	556	94560											
PCDH17	27253	broad.mit.edu	37	chr13	58207776	58207776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcgctgagcgaggccgccCctcccggcaccgtcatcgcc	14	19	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207776	T	T	58207776	3	4	94	1	0	0	0	0	1	0	0	0	11606	623	22	4	1098	4	PCDH17	13	58207776	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	25850978	58207776	56962102	557	94561											
LMO7	4008	broad.mit.edu	37	chr13	76427505	76427505	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttcagcttcacagtcaGgctctcagctgcgtaacagg	9	15	4	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76427505	T	T	76427505	3	4	94	1	0	0	0	0	1	0	0	0	8929	1000	35	2	4912	2	LMO7	13	76427505	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	18219729	76427505	38742373	558	94562											
SLITRK1	114798	broad.mit.edu	37	chr13	84454311	84454311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactctaggttttgcagcccCgcgaatttctcccgggacag	10	13	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84454311	A	A	84454311	2	1	94	1	0	0	0	0	0	0	0	1	14856	639	23	1		1	SLITRK1	13	84454311	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	8026806	84454311	30715567	559	94563											
SLITRK1	114798	broad.mit.edu	37	chr13	84455094	84455094	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcctgttaccccggagGtcgaggtgggtgatgggcac	16	10	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84455094	C	C	84455094	3	2	94	1	0	0	0	0	1	0	0	0	14856	1252	44	4	1545	4	SLITRK1	13	84455094	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	783	84455094	30714784	560	94564											
OR4K17	390436	broad.mit.edu	37	chr14	20586080	20586080	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcatgaacaagaaggtatGtgttttgcttgtagtgacct	10	6	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20586080	A	A	20586080	3	1	94	1	0	0	0	0	1	0	0	0	11165	1377	48	4	517	4	OR4K17	14	20586080	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		20586080	86763460	561	94565											
RNASE1	6035	broad.mit.edu	37	chr14	21269740	21269741	+	3'UTR	INS	-	ATAC	ATAC													aggttgagggaggtggggtaINStctcgctgctctgaccttag							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATAC	21269741	ATAC	ATAC	21269740	6	5	94	0	1	1	1	0	0	0	0	0	13510	464	16	0		0	RNASE1	14	21269740	3'UTR	INS	-	TCGA-35-4123-01A-01D-1105-08	683660	21269740	86079800	562	94566											
METT11D1	64745	broad.mit.edu	37	chr14	21458132	21458132	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagggtcacaggcacctgTatttccgtttccggttcgcc	11	13	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21458132	A	A	21458132	1	1	94	0	1	0	0	0	0	0	0	0	9584	1653	57	5		5	METT11D1	14	21458132	5'UTR	SNP	T	TCGA-35-4123-01A-01D-1105-08	188392	21458132	85891408	563	94567											
RPGRIP1	57096	broad.mit.edu	37	chr14	21790024	21790024	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttcaggaggaactggaGgcaatgatgacaaaagctga	13	5	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21790024	A	A	21790024	2	1	94	1	0	0	0	0	0	0	0	1	13660	991	35	4		4	RPGRIP1	14	21790024	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	331892	21790024	85559516	564	94568											
SLC7A8	23428	broad.mit.edu	37	chr14	23608613	23608613	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcattcctggtatgagactCtgggactttcatttcttacc	8	10	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23608613	A	A	23608613	1	1	94	0	1	0	0	0	0	0	0	0	14818	928	32	3		3	SLC7A8	14	23608613	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1818589	23608613	83740927	565	94569											
PABPN1	8106	broad.mit.edu	37	chr14	23794376	23794376	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcccttcacagtaactgGggcaggggcctacggggagg	15	12	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23794376	T	T	23794376	1	4	94	0	1	0	0	0	0	0	0	0	11462	1247	43	2		2	PABPN1	14	23794376	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	185763	23794376	83555164	566	94570											
NPAS3	64067	broad.mit.edu	37	chr14	34243744	34243744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgaaaataggtactttGtttttgttttcatttgccct	7	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34243744	T	T	34243744	1	4	94	0	1	0	0	0	0	0	0	0	10659	1392	48	3		3	NPAS3	14	34243744	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	10449368	34243744	73105796	567	94571											
SDCCAG1	9147	broad.mit.edu	37	chr14	50292799	50292799	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctacacacacacacacaAacacacacacacacaaatac	0	16	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50292799	C	C	50292799	1	2	94	0	1	0	0	0	0	0	0	0	14070	29	1	5		5	SDCCAG1	14	50292799	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	16049055	50292799	57056741	568	94572											
TXNDC16	57544	broad.mit.edu	37	chr14	52977860	52977860	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaacatgcatctataaAtcaaaacttaacaaatttta	2	6	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52977860	G	G	52977860	1	3	94	0	1	0	0	0	0	0	0	0	16921	116	4	5		5	TXNDC16	14	52977860	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2685061	52977860	54371680	569	94573											
SLC35F4	341880	broad.mit.edu	37	chr14	58056241	58056241	+	Intron	DEL	G	-	-													cccatcgtctgctggaaacaGgaaaggaatacaaatgtgag							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58056241	-	-	58056241	6	5	94	0	1	1	0	1	0	0	0	0	14705	1015	35	0		0	SLC35F4	14	58056241	Intron	DEL	G	TCGA-35-4123-01A-01D-1105-08	5078381	58056241	49293299	570	94574											
DAAM1	23002	broad.mit.edu	37	chr14	59798619	59798619	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agacctggaaagaaccttctCtgcctatcaaagacagcagg	9	11	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59798619	A	A	59798619	3	1	94	1	0	0	0	0	1	0	0	0	4248	913	32	3	2003	3	DAAM1	14	59798619	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1742378	59798619	47550921	571	94575											
RTN1	6252	broad.mit.edu	37	chr14	60213093	60213093	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatatgtagaatcctcctgAggtggatagcagatgtcaga	11	6	1	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60213093	G	G	60213093	2	3	94	1	0	0	0	0	0	0	0	1	13836	291	11	5		5	RTN1	14	60213093	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	414474	60213093	47136447	572	94576											
PRKCH	5583	broad.mit.edu	37	chr14	61788817	61788817	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccggggcagcggcgccGgcatgtcgtctggcaccatg	19	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61788817	T	T	61788817	1	4	94	0	1	0	0	0	0	0	0	0	12619	1131	39	1		1	PRKCH	14	61788817	5'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	1575724	61788817	45560723	573	94577											
KCNH5	27133	broad.mit.edu	37	chr14	63246542	63246542	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagcaaggcttcccgcttGatgatgtgtaggtcacagta	12	8	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63246542	T	T	63246542	2	4	94	1	0	0	0	0	0	0	0	1	8105	1280	45	3		3	KCNH5	14	63246542	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	1457725	63246542	44102998	574	94578											
PLEKHG3	26030	broad.mit.edu	37	chr14	65197348	65197348	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgaaatcactatttttgAtctcttcttagagccaagag	6	10	3	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65197348	G	G	65197348	1	3	94	0	1	0	0	0	0	0	0	0	12165	348	12	5		5	PLEKHG3	14	65197348	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1950806	65197348	42152192	575	94579											
SLC8A3	6547	broad.mit.edu	37	chr14	70633341	70633341	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagggaggggcagaatacAggaaggttacttacacagtt	14	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70633341	T	T	70633341	1	4	94	0	1	0	0	0	0	0	0	0	14822	203	7	5		5	SLC8A3	14	70633341	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	5435993	70633341	36716199	576	94580											
TMEM63C	57156	broad.mit.edu	37	chr14	77703169	77703169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagagaagccctcagagGgtccagggagactgtgatag	14	10	2	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77703169	T	T	77703169	1	4	94	0	1	0	0	0	0	0	0	0	16315	1247	43	2		2	TMEM63C	14	77703169	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	7069828	77703169	29646371	577	94581											
TMEM63C	57156	broad.mit.edu	37	chr14	77709294	77709294	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgggcccgctttatcgcAatcaacaccttcctcttctt	7	14	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77709294	T	T	77709294	2	4	94	1	0	0	0	0	0	0	0	1	16315	117	5	5		5	TMEM63C	14	77709294	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	6125	77709294	29640246	578	94582											
TMEM63C	57156	broad.mit.edu	37	chr14	77710631	77710631	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgggaggagaagaagCaaggggaagaggatgcttgc	20	3	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77710631	G	G	77710631	1	3	94	0	1	0	0	0	0	0	0	0	16315	725	25	4		4	TMEM63C	14	77710631	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1337	77710631	29638909	579	94583											
KCNK10	54207	broad.mit.edu	37	chr14	88729781	88729781	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccttccatcctggctaccActgtggctcgggaggaaatg	12	12	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88729781	T	T	88729781	3	4	94	1	0	0	0	0	1	0	0	0	8129	159	6	5	1488	5	KCNK10	14	88729781	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	11019150	88729781	18619759	580	94584											
SERPINA3	12	broad.mit.edu	37	chr14	95090210	95090210	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaatgcaagctggatgccTgggtctctgggcacagcctg	15	10	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95090210	A	A	95090210	1	1	94	0	1	0	0	0	0	0	0	0	14203	1595	55	5		5	SERPINA3	14	95090210	3'UTR	SNP	T	TCGA-35-4123-01A-01D-1105-08	6360429	95090210	12259330	581	94585											
C14orf177	283598	broad.mit.edu	37	chr14	99182744	99182744	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtaagtatttcccataCattgccttgcttgttaaaat	7	7	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99182744	T	T	99182744	1	4	94	0	1	0	0	0	0	0	0	0	1773	493	17	4		4	C14orf177	14	99182744	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4092534	99182744	8166796	582	94586											
CYP46A1	10858	broad.mit.edu	37	chr14	100182493	100182493	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaagagggagcccaggaCgacgagggtctgctggacaa	17	9	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100182493	T	T	100182493	2	4	94	1	0	0	0	0	0	0	0	1	4215	535	19	4		4	CYP46A1	14	100182493	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	999749	100182493	7167047	583	94587											
BRF1	2972	broad.mit.edu	37	chr14	105692627	105692627	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgacaggacttgttcaaGctgaaagggaacagggcaag	13	6	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105692627	A	A	105692627	3	1	94	1	0	0	0	0	1	0	0	0	1519	985	34	4	1157	4	BRF1	14	105692627	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	5510134	105692627	1656913	584	94588											
TUBGCP5	114791	broad.mit.edu	37	chr15	22862760	22862760	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctgaccctaagtcagtgGcaacttcaagagactggttc	9	11	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22862760	A	A	22862760	1	1	94	0	1	0	0	0	0	0	0	0	16895	1218	42	4		4	TUBGCP5	15	22862760	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08		22862760	79668632	585	94589											
OCA2	4948	broad.mit.edu	37	chr15	28171326	28171326	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggttgcccattccactcTgtgtagaattatctcaaaat	7	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28171326	C	C	28171326	3	2	94	1	0	0	0	0	1	0	0	0	10910	1588	55	5	514	5	OCA2	15	28171326	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	5308566	28171326	74360066	586	94590											
C15orf41	84529	broad.mit.edu	37	chr15	36936445	36936445	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctttgccgtgcactccaGtaattaactttgtccttctt	5	11	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36936445	C	C	36936445	1	2	94	0	1	0	0	0	0	0	0	0	1808	1044	36	4		4	C15orf41	15	36936445	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	8765119	36936445	65594947	587	94591											
CDAN1	146059	broad.mit.edu	37	chr15	43027805	43027805	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcatctgtgaggcttcctgtCcggctggggaggggcgaccc	16	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43027805	G	G	43027805	2	3	94	1	0	0	0	0	0	0	0	1	3084	842	30	4		4	CDAN1	15	43027805	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	6091360	43027805	59503587	588	94592											
DMXL2	23312	broad.mit.edu	37	chr15	51780775	51780775	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccacactactgctttcttcTtcattgaaaggtagaatagt	6	10	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51780775	C	C	51780775	3	2	94	1	0	0	0	0	1	0	0	0	4635	1609	56	5	4184	5	DMXL2	15	51780775	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	8752970	51780775	50750617	589	94593											
ANXA2	302	broad.mit.edu	37	chr15	60641388	60641388	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcaggaccttatctcgcgtCcccttgccctgaaaatcaag	7	14	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60641388	T	T	60641388	2	4	94	1	0	0	0	0	0	0	0	1	718	842	30	4		4	ANXA2	15	60641388	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	8860613	60641388	41890004	590	94594											
VPS13C	54832	broad.mit.edu	37	chr15	62174899	62174899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaatagggctacgaatagGgaggcgcatttccattggat	12	6	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62174899	T	T	62174899	3	4	94	1	0	0	0	0	1	0	0	0	17318	1232	43	2	1837	2	VPS13C	15	62174899	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1533511	62174899	40356493	591	94595											
IGDCC3	9543	broad.mit.edu	37	chr15	65621153	65621153	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgctggggagcccccaGgaccatccaaatcccacatg	10	14	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65621153	A	A	65621153	1	1	94	0	1	0	0	0	0	0	0	0	7638	1015	35	4		4	IGDCC3	15	65621153	3'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	3446254	65621153	36910239	592	94596											
RPL3L	6123	broad.mit.edu	37	chr16	2000734	2000734	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcagccgctcctctgggtCtgtgccgaggctcgggtatt	15	12	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2000734	A	A	2000734	1	1	94	0	1	0	0	0	0	0	0	0	13705	928	32	3		3	RPL3L	16	2000734	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08		2000734	88354019	593	94597											
CASKIN1	57524	broad.mit.edu	37	chr16	2233816	2233816	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgcagctggcgctggcggCgcatggaaagctcacctcgg	16	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2233816	T	T	2233816	1	4	94	0	1	0	0	0	0	0	0	0	2692	783	27	4		4	CASKIN1	16	2233816	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	233082	2233816	88120937	594	94598											
GRIN2A	2903	broad.mit.edu	37	chr16	9935019	9935019	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggaaggtttgttcacaatCattagctgtactcttctcct	7	10	4	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9935019	A	A	9935019	1	1	94	0	1	0	0	0	0	0	0	0	6845	841	29	3		3	GRIN2A	16	9935019	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	7701203	9935019	80419734	595	94599											
GRIN2A	2903	broad.mit.edu	37	chr16	10031897	10031897	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcggggatgtaggagaacTtctccagcatagaagatgca	12	9	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10031897	G	G	10031897	3	3	94	1	0	0	0	0	1	0	0	0	6845	1609	56	5	3512	5	GRIN2A	16	10031897	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	96878	10031897	80322856	596	94600											
CIITA	4261	broad.mit.edu	37	chr16	11016071	11016071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagccgagagcttggctcGtgtgcttccggacatggtgt	17	9	0	1	rs142072017		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11016071	T	T	11016071	3	4	94	1	0	0	0	0	1	0	0	0	3459	1145	40	3	3263	3	CIITA	16	11016071	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	984174	11016071	79338682	597	94601											
PDILT	204474	broad.mit.edu	37	chr16	20370695	20370695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactggaggtccctttggCttagccaccaccaccaccac	8	17	0	0	rs142976690	byFrequency	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20370695	A	A	20370695	3	1	94	1	0	0	0	0	1	0	0	0	11768	796	28	3	57	3	PDILT	16	20370695	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	9354624	20370695	69984058	598	94602											
ACSM5	54988	broad.mit.edu	37	chr16	20448550	20448550	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgaaatttcatgggggttGagggaagcccacttggaaga	14	5	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20448550	T	T	20448550	1	4	94	0	1	0	0	0	0	0	0	0	187	1305	45	3		3	ACSM5	16	20448550	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	77855	20448550	69906203	599	94603											
SEZ6L2	26470	broad.mit.edu	37	chr16	29909285	29909285	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaggctctggcaatatctCctcctccttcaggggcagac	9	15	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29909285	A	A	29909285	4	1	94	1	0	0	0	0	0	1	0	0	14257	864	30	3	2739	3	SEZ6L2	16	29909285	Nonsense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	9460735	29909285	60445468	600	94604											
ITGAM	3684	broad.mit.edu	37	chr16	31336212	31336212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacttcaacatttgattttAttgtttaatttcacaatact	2	6	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31336212	G	G	31336212	1	3	94	0	1	0	0	0	0	0	0	0	7957	464	16	5		5	ITGAM	16	31336212	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1426927	31336212	59018541	601	94605											
ITGAX	3687	broad.mit.edu	37	chr16	31384813	31384813	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtggtagtgccatctGgggcacgcctctgctcgtgt	16	10	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31384813	A	A	31384813	1	1	94	0	1	0	0	0	0	0	0	0	7959	1363	47	4		4	ITGAX	16	31384813	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	48601	31384813	58969940	602	94606											
CYLD	1540	broad.mit.edu	37	chr16	50828404	50828404	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagtgggacagtttgtaGtgggatcgcctgttctgagt	15	5	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50828404	A	A	50828404	1	1	94	0	1	0	0	0	0	0	0	0	4176	1044	36	4		4	CYLD	16	50828404	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	19443591	50828404	39526349	603	94607											
MMP2	4313	broad.mit.edu	37	chr16	55519725	55519725	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtccccaagactttccaccCcaagcctccagcttcccggg	7	19	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55519725	G	G	55519725	1	3	94	0	1	0	0	0	0	0	0	0	9751	638	22	4		4	MMP2	16	55519725	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4691321	55519725	34835028	604	94608											
SLC6A2	6530	broad.mit.edu	37	chr16	55731751	55731751	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaggaaccctggggcctgAgactgaggtccagggagacc	15	11	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55731751	G	G	55731751	1	3	94	0	1	0	0	0	0	0	0	0	14797	319	11	5		5	SLC6A2	16	55731751	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	212026	55731751	34623002	605	94609											
CNGB1	1258	broad.mit.edu	37	chr16	57937651	57937651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggacgagggaggcgcccCgaaggcatggcaccgggcac	18	12	0	1	rs117427943	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57937651	A	A	57937651	1	1	94	0	1	0	0	0	0	0	0	0	3632	667	23	1		1	CNGB1	16	57937651	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2205900	57937651	32417102	606	94610											
CDH8	1006	broad.mit.edu	37	chr16	61689273	61689273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagttcctcttccccaacGgaatgctcttgcctgtgtag	10	12	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61689273	T	T	61689273	1	4	94	0	1	0	0	0	0	0	0	0	3146	1131	39	1		1	CDH8	16	61689273	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3751622	61689273	28665480	607	94611											
HYDIN	54768	broad.mit.edu	37	chr16	71007834	71007834	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtccacactgaattgtGgcaaagtccacttttccacg	7	13	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71007834	T	T	71007834	2	4	94	1	0	0	0	0	0	0	0	1	7537	1335	47	2		2	HYDIN	16	71007834	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	9318561	71007834	19346919	608	94612											
MLKL	197259	broad.mit.edu	37	chr16	74709403	74709403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaattttttgattactacCcaatttcattcaacagagtt	5	7	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74709403	A	A	74709403	1	1	94	0	1	0	0	0	0	0	0	0	9712	638	22	2		2	MLKL	16	74709403	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	3701569	74709403	15645350	609	94613											
CNTNAP4	85445	broad.mit.edu	37	chr16	76573654	76573654	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagttaaataaatatcaaGagcctgatgttgttaacttt	6	5	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76573654	T	T	76573654	4	4	94	1	0	0	0	0	0	1	0	0	3681	943	33	3	3350	3	CNTNAP4	16	76573654	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1864251	76573654	13781099	610	94614											
ADAMTS18	170692	broad.mit.edu	37	chr16	77331205	77331205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagccgggcaggagaaagCgttgcagattttgggctcag	15	8	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77331205	A	A	77331205	3	1	94	1	0	0	0	0	1	0	0	0	263	768	27	3	907	3	ADAMTS18	16	77331205	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	757551	77331205	13023548	611	94615											
DYNLRB2	83657	broad.mit.edu	37	chr16	80584308	80584308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggaaaccatctgtctGcacaaggtccctgtgatgtt	13	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80584308	T	T	80584308	1	4	94	0	1	0	0	0	0	0	0	0	4891	1334	46	3		3	DYNLRB2	16	80584308	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3253103	80584308	9770445	612	94616											
PKD1L2	114780	broad.mit.edu	37	chr16	81208553	81208553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatatgctcagaacctgCtaggaagaagctggcctctg	11	9	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81208553	A	A	81208553	1	1	94	0	1	0	0	0	0	0	0	0	12060	812	28	3		3	PKD1L2	16	81208553	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	624245	81208553	9146200	613	94617											
PKD1L2	114780	broad.mit.edu	37	chr16	81254001	81254001	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaccactgctggggcctctgGatggagctcgctcttgggac	14	12	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81254001	C	C	81254001	1	2	94	0	1	0	0	0	0	0	0	0	12060	1189	41	4		4	PKD1L2	16	81254001	5'Flank	SNP	G	TCGA-35-4123-01A-01D-1105-08	45448	81254001	9100752	614	94618											
CDH13	1012	broad.mit.edu	37	chr16	83635987	83635987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagacagctccagcaacaCgcctgccacctttccaaagc	8	16	0	1	rs151197808	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83635987	T	T	83635987	1	4	94	0	1	0	0	0	0	0	0	0	3129	551	19	4		4	CDH13	16	83635987	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2381986	83635987	6718766	615	94619											
ZCCHC14	23174	broad.mit.edu	37	chr16	87447928	87447928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccatctgcccgacacacGggccctctctgtgtatgagt	9	15	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87447928	T	T	87447928	1	4	94	0	1	0	0	0	0	0	0	0	17709	1131	39	1		1	ZCCHC14	16	87447928	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3811941	87447928	2906825	616	94620											
DPH1	1801	broad.mit.edu	37	chr17	1936926	1936926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccccaagaccatctggagGatccaacaagcccaggccaa	8	15	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1936926	T	T	1936926	3	4	94	1	0	0	0	0	1	0	0	0	4759	1165	41	3	210	3	DPH1	17	1936926	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		1936926	79258284	617	94621											
PSMB6	5694	broad.mit.edu	37	chr17	4701416	4701416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctaccgggaaggcatgaCcaaggaagagtgtctgcaat	12	9	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4701416	A	A	4701416	3	1	94	1	0	0	0	0	1	0	0	0	12787	507	18	3	563	3	PSMB6	17	4701416	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2764490	4701416	76493794	618	94622											
TP53	7157	broad.mit.edu	37	chr17	7578492	7578492	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggggtgtggaatcaacCcacagctgcacagggcaggt	17	10	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578492	T	T	7578492	4	4	94	1	0	0	0	0	0	1	0	0	16505	624	22	4	860	4	TP53	17	7578492	Nonsense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2877076	7578492	73616718	619	94623											
NDEL1	81565	broad.mit.edu	37	chr17	8350154	8350154	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtcagactcgggccattaAggagcagttgcataagtatg	12	7	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8350154	G	G	8350154	3	3	94	1	0	0	0	0	1	0	0	0	10339	72	3	5	333	5	NDEL1	17	8350154	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	771662	8350154	72845056	620	94624											
DHRS7C	201140	broad.mit.edu	37	chr17	9674801	9674802	+	3'UTR	DNP	GC	AG	AG													ggtggcccatttggcctcctGcagttacccctcctccggga							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	9674802	AG	AG	9674801	1	1	94	0	1	0	0	0	0	0	0	0	4537	1334	46	4		4	DHRS7C	17	9674801	3'UTR	DNP	GC	TCGA-35-4123-01A-01D-1105-08	1324647	9674801	71520409	621	94625											
MYH13	8735	broad.mit.edu	37	chr17	10253943	10253943	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcatgttcccataatgcatCacggctcccgtcagtttgta	7	12	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10253943	T	T	10253943	2	4	94	1	0	0	0	0	0	0	0	1	10126	813	29	4		4	MYH13	17	10253943	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	579142	10253943	70941267	622	94626											
MYH1	4619	broad.mit.edu	37	chr17	10404159	10404159	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattccatatgagctgcagTactcatttattttgagaaga	7	7	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10404159	C	C	10404159	1	2	94	0	1	0	0	0	0	0	0	0	10123	1653	57	5		5	MYH1	17	10404159	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	150216	10404159	70791051	623	94627											
MYH1	4619	broad.mit.edu	37	chr17	10408603	10408603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggagccccagaagaccaGctttgaaaaagacctatgtg	10	10	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10408603	T	T	10408603	3	4	94	1	0	0	0	0	1	0	0	0	10123	971	34	3	3587	3	MYH1	17	10408603	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	4444	10408603	70786607	624	94628											
FOXN1	8456	broad.mit.edu	37	chr17	26851543	26851543	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcatgccggcttcagctgctCgtcatttgtgtccgacggcc	12	14	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26851543	T	T	26851543	3	4	94	1	0	0	0	0	1	0	0	0	6079	893	31	4	152	4	FOXN1	17	26851543	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	16442940	26851543	54343667	625	94629											
LIG3	3980	broad.mit.edu	37	chr17	33319679	33319679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgagctctgagcgtccagGcctcgctgatgacacctgtg	13	13	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33319679	T	T	33319679	3	4	94	1	0	0	0	0	1	0	0	0	8854	1203	42	3	1449	3	LIG3	17	33319679	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	6468136	33319679	47875531	626	94630											
MYO19	80179	broad.mit.edu	37	chr17	34859855	34859855	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacaggcctccagctggctCaggacctgcaagggtgggga	15	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34859855	A	A	34859855	2	1	94	1	0	0	0	0	0	0	0	1	10161	813	29	3		3	MYO19	17	34859855	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	1540176	34859855	46335355	627	94631											
C17orf78	284099	broad.mit.edu	37	chr17	35742976	35742976	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggatctcacaatgtaaaGtcctgggggcttcatcagag	12	9	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35742976	C	C	35742976	3	2	94	1	0	0	0	0	1	0	0	0	1900	1029	36	4	435	4	C17orf78	17	35742976	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	883121	35742976	45452234	628	94632											
FKBP10	60681	broad.mit.edu	37	chr17	39974501	39974501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctaccactacaatggcacCctgctggacggcacctcctt	8	17	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39974501	A	A	39974501	2	1	94	1	0	0	0	0	0	0	0	1	5959	610	22	2		2	FKBP10	17	39974501	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	4231525	39974501	41220709	629	94633											
KCNH4	23415	broad.mit.edu	37	chr17	40312564	40312564	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgctcatggccacccTgggaaaaaggcaggatgagg	13	10	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40312564	A	A	40312564	1	1	94	0	1	0	0	0	0	0	0	0	8104	1595	55	5		5	KCNH4	17	40312564	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	338063	40312564	40882646	630	94634											
EZH1	2145	broad.mit.edu	37	chr17	40860860	40860860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagagtgaggcctccagCtgaactgctgaagaatgccc	11	13	0	5			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40860860	A	A	40860860	1	1	94	0	1	0	0	0	0	0	0	0	5376	812	28	3		3	EZH1	17	40860860	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	548296	40860860	40334350	631	94635											
GFAP	2670	broad.mit.edu	37	chr17	42985523	42985523	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtccaggctggtttctgcaGatgtggggagaggaggcctc	17	8	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42985523	A	A	42985523	1	1	94	0	1	0	0	0	0	0	0	0	6401	957	33	4		4	GFAP	17	42985523	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2124663	42985523	38209687	632	94636											
CALCOCO2	10241	broad.mit.edu	37	chr17	46928611	46928611	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttaagtacagtcagattAgatttctggaatttgtgaga	9	6	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46928611	T	T	46928611	1	4	94	0	1	0	0	0	0	0	0	0	2604	435	15	5		5	CALCOCO2	17	46928611	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	3943088	46928611	34266599	633	94637											
CACNA1G	8913	broad.mit.edu	37	chr17	48680470	48680470	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctcatctccgtcatcgAcattctggtgtccatggtct	10	12	5	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48680470	G	G	48680470	3	3	94	1	0	0	0	0	1	0	0	0	2570	275	10	5	4161	5	CACNA1G	17	48680470	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	1751859	48680470	32514740	634	94638											
COIL	8161	broad.mit.edu	37	chr17	55038469	55038469	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgccggagcctttggcGtgtgccacctagtggtgaaa	13	14	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55038469	T	T	55038469	1	4	94	0	1	0	0	0	0	0	0	0	3697	1160	40	3		3	COIL	17	55038469	5'Flank	SNP	G	TCGA-35-4123-01A-01D-1105-08	6357999	55038469	26156741	635	94639											
MKS1	54903	broad.mit.edu	37	chr17	56283513	56283513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcctgcatgcggcgcCgggctcgacggaaggcctct	16	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56283513	A	A	56283513	3	1	94	1	0	0	0	0	1	0	0	0	9702	652	23	1	76	1	MKS1	17	56283513	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1245044	56283513	24911697	636	94640											
BCAS3	54828	broad.mit.edu	37	chr17	59024539	59024539	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatatttcatccacatacAtaatcatttttatttttacc	1	8	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59024539	G	G	59024539	1	3	94	0	1	0	0	0	0	0	0	0	1357	232	8	5		5	BCAS3	17	59024539	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	2741026	59024539	22170671	637	94641											
EFCAB3	146779	broad.mit.edu	37	chr17	60469123	60469123	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattgtctgtcctagtcctAttagtgtatgtacttcttct	6	8	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60469123	T	T	60469123	1	4	94	0	1	0	0	0	0	0	0	0	4975	464	16	5		5	EFCAB3	17	60469123	Intron	SNP	A	TCGA-35-4123-01A-01D-1105-08	1444584	60469123	20726087	638	94642											
KPNA2	3838	broad.mit.edu	37	chr17	66040631	66040631	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctttcaggtaagtcctatCaaggtggctttgtttgaatt	9	6	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66040631	T	T	66040631	1	4	94	0	1	0	0	0	0	0	0	0	8501	841	29	4		4	KPNA2	17	66040631	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	5571508	66040631	15154579	639	94643											
SOX9	6662	broad.mit.edu	37	chr17	70120440	70120440	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccatgtacacccccatcgCcgacacctctggggtccctt	7	20	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70120440	G	G	70120440	3	3	94	1	0	0	0	0	1	0	0	0	15072	739	26	4	1452	4	SOX9	17	70120440	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	4079809	70120440	11074770	640	94644											
SDK2	54549	broad.mit.edu	37	chr17	71398284	71398284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccaggcgatcagctgCggagaggcgagcaagtcaca	15	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71398284	A	A	71398284	1	1	94	0	1	0	0	0	0	0	0	0	14082	783	27	3		3	SDK2	17	71398284	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1277844	71398284	9796926	641	94645											
KIF19	124602	broad.mit.edu	37	chr17	72339142	72339142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccccaccccggtcaccCtccaccttgttctgccccag	6	23	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72339142	A	A	72339142	1	1	94	0	1	0	0	0	0	0	0	0	8352	696	24	2		2	KIF19	17	72339142	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	940858	72339142	8856068	642	94646											
CD300A	11314	broad.mit.edu	37	chr17	72470860	72470860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagacatggagggggccCtgtgctaagaggaggagccc	17	10	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72470860	A	A	72470860	1	1	94	0	1	0	0	0	0	0	0	0	3026	696	24	2		2	CD300A	17	72470860	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	131718	72470860	8724350	643	94647											
GRB2	2885	broad.mit.edu	37	chr17	73316567	73316567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatggataaaatctcccCggcggaagcccagctctcca	9	14	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73316567	A	A	73316567	3	1	94	1	0	0	0	0	1	0	0	0	6824	652	23	1	121	1	GRB2	17	73316567	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	845707	73316567	7878643	644	94648											
CCDC40	55036	broad.mit.edu	37	chr17	78021138	78021138	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgtccagcaccgcttcCggctgagccacgggagcgac	15	15	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78021138	A	A	78021138	2	1	94	1	0	0	0	0	0	0	0	1	2839	643	23	1		1	CCDC40	17	78021138	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	4704571	78021138	3174072	645	94649											
ARL16	339231	broad.mit.edu	37	chr17	79650818	79650818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccggcacccgtagctcgGcgccgcggctcaaggcccgc	13	20	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79650818	T	T	79650818	3	4	94	1	0	0	0	0	1	0	0	0	934	1203	42	3	575	3	ARL16	17	79650818	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1629680	79650818	1544392	646	94650											
COLEC12	81035	broad.mit.edu	37	chr18	334694	334694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggttggctcagtctcaagCacatgcactgccctgtcccc	11	15	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	334694	A	A	334694	1	1	94	0	1	0	0	0	0	0	0	0	3744	725	25	3		3	COLEC12	18	334694	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08		334694	77742554	647	94651											
PTPRM	5797	broad.mit.edu	37	chr18	8380268	8380268	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccattttcctgagtatattTggagcattcttgtttgtgtt	8	7	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8380268	C	C	8380268	1	2	94	0	1	0	0	0	0	0	0	0	12914	1827	63	5		5	PTPRM	18	8380268	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	8045574	8380268	69696980	648	94652											
POTEC	388468	broad.mit.edu	37	chr18	14542475	14542475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgctgtttataaagggacCtgggccctgacctctctgag	12	10	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14542475	A	A	14542475	1	1	94	0	1	0	0	0	0	0	0	0	12358	696	24	2		2	POTEC	18	14542475	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	6162207	14542475	63534773	649	94653											
LAMA3	3909	broad.mit.edu	37	chr18	21441624	21441624	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccagtttgtggatatgctGggctggcacctggagacagc	14	9	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21441624	A	A	21441624	2	1	94	1	0	0	0	0	0	0	0	1	8679	1335	47	4		4	LAMA3	18	21441624	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	6899149	21441624	56635624	650	94654											
DSG4	147409	broad.mit.edu	37	chr18	28979469	28979469	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttggcacatatacagccAtagatttggacacaggaaac	9	9	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28979469	G	G	28979469	3	3	94	1	0	0	0	0	1	0	0	0	4819	217	8	5	1274	5	DSG4	18	28979469	Missense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	7537845	28979469	49097779	651	94655											
MCART2	147407	broad.mit.edu	37	chr18	29340603	29340603	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtattggtggcctcttttCatgagcttctgaatctatca	8	8	5	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29340603	A	A	29340603	4	1	94	1	0	0	0	0	0	1	0	0	9463	835	29	3	875	3	MCART2	18	29340603	Nonsense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	361134	29340603	48736645	652	94656											
SETBP1	26040	broad.mit.edu	37	chr18	42530189	42530189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctccatccccaagcaGccacagctcaccagccccac	7	20	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42530189	T	T	42530189	3	4	94	1	0	0	0	0	1	0	0	0	14242	971	34	3	1087	3	SETBP1	18	42530189	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	13189586	42530189	35547059	653	94657											
SLC14A2	8170	broad.mit.edu	37	chr18	43224153	43224153	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatgttcggggaagaaacGctctttgcctgacctgatgt	12	10	1	3	rs76167630	byFrequency;by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43224153	C	C	43224153	1	2	94	0	1	0	0	0	0	0	0	0	14510	1102	38	4		4	SLC14A2	18	43224153	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	693964	43224153	34853095	654	94658											
SERPINB3	6317	broad.mit.edu	37	chr18	61323052	61323052	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcagcttctgctccctcctCtgtaacctccacaaaggcct	6	17	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61323052	G	G	61323052	3	3	94	1	0	0	0	0	1	0	0	0	14215	922	32	4	164	4	SERPINB3	18	61323052	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	18098899	61323052	16754196	655	94659											
CD226	10666	broad.mit.edu	37	chr18	67540336	67540336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggttattaatagagaacCtctaacatggtgaataagat	9	5	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67540336	A	A	67540336	1	1	94	0	1	0	0	0	0	0	0	0	3016	696	24	2		2	CD226	18	67540336	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	6217284	67540336	10536912	656	94660											
ZNF407	55628	broad.mit.edu	37	chr18	72346333	72346333	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaccatctgatactcttAaatctagaaatgctgcagat	6	9	4	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72346333	T	T	72346333	4	4	94	1	0	0	0	0	0	1	0	0	18014	363	13	5	3360	5	ZNF407	18	72346333	Nonsense_Mutation	SNP	A	TCGA-35-4123-01A-01D-1105-08	4805997	72346333	5730915	657	94661											
MBP	4155	broad.mit.edu	37	chr18	74701873	74701873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccagcacccctcctcccCctcacagttgctacctcttc	5	21	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74701873	A	A	74701873	1	1	94	0	1	0	0	0	0	0	0	0	9452	638	22	2		2	MBP	18	74701873	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2355540	74701873	3375375	658	94662											
C19orf22	91300	broad.mit.edu	37	chr19	899546	899546	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggggctgcagcgtggggtgtCcgcccacctggccgcagcct	17	15	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	899546	G	G	899546	1	3	94	0	1	0	0	0	0	0	0	0	1933	870	30	4		4	C19orf22	19	899546	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08		899546	58229437	659	94663											
AP3D1	8943	broad.mit.edu	37	chr19	2115422	2115422	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgacataggcagccctgcGggccggcagcgggcagccac	15	15	1	1	rs116599347	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2115422	A	A	2115422	1	1	94	0	1	0	0	0	0	0	0	0	748	1131	39	4		4	AP3D1	19	2115422	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1215876	2115422	57013561	660	94664											
EEF2	1938	broad.mit.edu	37	chr19	3985437	3985437	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaagcgagtcgcgccgagGatggcggcgacgacggcgga	19	10	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3985437	A	A	3985437	1	1	94	0	1	0	0	0	0	0	0	0	4969	1189	41	4		4	EEF2	19	3985437	5'UTR	SNP	G	TCGA-35-4123-01A-01D-1105-08	1870015	3985437	55143546	661	94665											
INSR	3643	broad.mit.edu	37	chr19	7162969	7162969	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaagagatagctgcttccCtagaggtgaagcaaagtgca	13	7	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7162969	G	G	7162969	1	3	94	0	1	0	0	0	0	0	0	0	7843	696	24	4		4	INSR	19	7162969	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	3177532	7162969	51966014	662	94666											
MUC16	94025	broad.mit.edu	37	chr19	9048356	9048356	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccactcctgataccccaGgtgaaacagttggagttgga	10	11	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9048356	T	T	9048356	3	4	94	1	0	0	0	0	1	0	0	0	10067	1000	35	2	10568	2	MUC16	19	9048356	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1885387	9048356	50080627	663	94667											
OR7G1	125962	broad.mit.edu	37	chr19	9225999	9225999	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagtgctcatgaacatggaGagaagaatcagcaagcccca	10	9	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9225999	T	T	9225999	2	4	94	1	0	0	0	0	0	0	0	1	11316	929	33	3		3	OR7G1	19	9225999	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	177643	9225999	49902984	664	94668											
RDH8	50700	broad.mit.edu	37	chr19	10132321	10132321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcctctggcagcctgtatGtgcgaacgacccaccgcctc	9	16	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10132321	T	T	10132321	3	4	94	1	0	0	0	0	1	0	0	0	13304	1377	48	3	854	3	RDH8	19	10132321	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	906322	10132321	48996662	665	94669											
CYP4F3	4051	broad.mit.edu	37	chr19	15769365	15769365	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgtggccggaccctgaGgtgcgggccccccgtctctg	16	16	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15769365	A	A	15769365	2	1	94	1	0	0	0	0	0	0	0	1	4223	1014	35	4		4	CYP4F3	19	15769365	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	5637044	15769365	43359618	666	94670											
LRRC25	126364	broad.mit.edu	37	chr19	18507413	18507413	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcggatgtcgtgccaggactCcagggcacagttgcagtcgg	16	11	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18507413	G	G	18507413	3	3	94	1	0	0	0	0	1	0	0	0	9067	864	30	4	564	4	LRRC25	19	18507413	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	2738048	18507413	40621570	667	94671											
NCAN	1463	broad.mit.edu	37	chr19	19334856	19334856	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttccactaccgatcagccCgggaccgctatgcactgacc	9	16	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19334856	A	A	19334856	2	1	94	1	0	0	0	0	0	0	0	1	10299	643	23	1		1	NCAN	19	19334856	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	827443	19334856	39794127	668	94672											
ZNF208	7757	broad.mit.edu	37	chr19	22157392	22157392	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagacatttgcatatttGccacgttgaaatactttgct	7	7	0	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22157392	T	T	22157392	2	4	94	1	0	0	0	0	0	0	0	1	17892	1306	46	3		3	ZNF208	19	22157392	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	2822536	22157392	36971591	669	94673											
ZNF536	9745	broad.mit.edu	37	chr19	31040159	31040159	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggggacagcctgcagccCacaggcacctcccagcccgt	13	18	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31040159	T	T	31040159	2	4	94	1	0	0	0	0	0	0	0	1	18101	581	21	4		4	ZNF536	19	31040159	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	8882767	31040159	28088824	670	94674											
TSHZ3	57616	broad.mit.edu	37	chr19	31767880	31767880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtggtcatggacagcCcggtgaacctggagatatgc	15	8	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31767880	A	A	31767880	3	1	94	1	0	0	0	0	1	0	0	0	16750	623	22	2	430	2	TSHZ3	19	31767880	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	727721	31767880	27361103	671	94675											
FXYD7	53822	broad.mit.edu	37	chr19	35642126	35642126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagccaaggtgctgtccCtgcctcgatgtcccccatta	10	15	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35642126	A	A	35642126	1	1	94	0	1	0	0	0	0	0	0	0	6183	696	24	2		2	FXYD7	19	35642126	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	3874246	35642126	23486857	672	94676											
RYR1	6261	broad.mit.edu	37	chr19	38939038	38939038	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggccagccactccgagtcCggcatgtcactaccgggcag	14	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38939038	T	T	38939038	3	4	94	1	0	0	0	0	1	0	0	0	13879	643	23	4	882	4	RYR1	19	38939038	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	3296912	38939038	20189945	673	94677											
LGALS13	29124	broad.mit.edu	37	chr19	40097972	40097972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacctcagtgtgtgtctGcaattgagggagatgatcac	12	9	3	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40097972	T	T	40097972	3	4	94	1	0	0	0	0	1	0	0	0	8812	1319	46	3	427	3	LGALS13	19	40097972	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1158934	40097972	19031011	674	94678											
PSG9	5678	broad.mit.edu	37	chr19	43763160	43763160	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccgggactgacggggagGctctgaccgtttagccacca	13	14	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43763160	T	T	43763160	3	4	94	1	0	0	0	0	1	0	0	0	12768	1194	42	3	455	3	PSG9	19	43763160	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	3665188	43763160	15365823	675	94679											
ZNF227	7770	broad.mit.edu	37	chr19	44732552	44732552	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgccacccttcttctaGtgaaggttggttgtaagatt	10	7	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44732552	C	C	44732552	1	2	94	0	1	0	0	0	0	0	0	0	17907	1044	36	4		4	ZNF227	19	44732552	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	969392	44732552	14396431	676	94680											
ZNF235	9310	broad.mit.edu	37	chr19	44803895	44803895	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcactgcctcctagaacatCaagcacatgtaacctcaatc	5	14	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44803895	A	A	44803895	1	1	94	0	1	0	0	0	0	0	0	0	17914	841	29	3		3	ZNF235	19	44803895	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	71343	44803895	14325088	677	94681											
CEACAM16	388551	broad.mit.edu	37	chr19	45206812	45206812	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcacaggcgatgagactccTggcccggcccacacggggcg	15	15	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45206812	A	A	45206812	2	1	94	1	0	0	0	0	0	0	0	1	3218	1567	55	5		5	CEACAM16	19	45206812	Silent	SNP	T	TCGA-35-4123-01A-01D-1105-08	402917	45206812	13922171	678	94682											
CGB	1082	broad.mit.edu	37	chr19	49548166	49548166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtctgagacctgtgggGgcaactggggagctcagctg	17	9	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49548166	T	T	49548166	1	4	94	0	1	0	0	0	0	0	0	0	3326	1247	43	2		2	CGB	19	49548166	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	4341354	49548166	9580817	679	94683											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52152225	52152225	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagatcaagcccctgagaagGaattttgcccaaaagatgct	9	9	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52152225	T	T	52152225	1	4	94	0	1	0	0	0	0	0	0	0	14422	1189	41	3		3	SIGLEC14	19	52152225	5'Flank	SNP	G	TCGA-35-4123-01A-01D-1105-08	2604059	52152225	6976758	680	94684											
HAS1	3036	broad.mit.edu	37	chr19	52219651	52219651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatataggcctgggtggaGgggaggtgtgaaagagtgtc	18	5	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52219651	T	T	52219651	1	4	94	0	1	0	0	0	0	0	0	0	7027	1015	35	2		2	HAS1	19	52219651	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	67426	52219651	6909332	681	94685											
ZNF845	91664	broad.mit.edu	37	chr19	53855116	53855116	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacctttagtcggaagtcAtcccttacacgccatcgtag	9	12	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53855116	T	T	53855116	2	4	94	1	0	0	0	0	0	0	0	1	18320	204	8	5		5	ZNF845	19	53855116	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	1635465	53855116	5273867	682	94686											
ZNF765	91661	broad.mit.edu	37	chr19	53901370	53901370	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatcttctctgagtctgaaGcatcttgcctgacaggtttg	10	9	4	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53901370	C	C	53901370	1	2	94	0	1	0	0	0	0	0	0	0	18268	986	34	4		4	ZNF765	19	53901370	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	46254	53901370	5227613	683	94687											
NLRP2	55655	broad.mit.edu	37	chr19	55512301	55512301	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcattctccatgaagtcatCgattttccaggtgttggtga	9	8	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55512301	T	T	55512301	1	4	94	0	1	0	0	0	0	0	0	0	10572	899	31	4		4	NLRP2	19	55512301	3'UTR	SNP	C	TCGA-35-4123-01A-01D-1105-08	1610931	55512301	3616682	684	94688											
ZNF547	284306	broad.mit.edu	37	chr19	57876262	57876262	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ataatccagtttttgaaatgGagtttttgccagctgggaag	11	5	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57876262	C	C	57876262	1	2	94	0	1	0	0	0	0	0	0	0	18106	1189	41	4		4	ZNF547	19	57876262	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2363961	57876262	1252721	685	94689											
SIRPG	55423	broad.mit.edu	37	chr20	1617103	1617103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaactcactgtatgctcaGgtgtggtcctcgccgcaggg	13	11	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1617103	T	T	1617103	3	4	94	1	0	0	0	0	1	0	0	0	14449	1000	35	2	696	2	SIRPG	20	1617103	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		1617103	61408417	686	94690											
ADAM33	80332	broad.mit.edu	37	chr20	3655230	3655230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccacaggttcctttccagGtgagcagctgctccatccga	11	14	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3655230	T	T	3655230	3	4	94	1	0	0	0	0	1	0	0	0	250	1261	44	3	1988	3	ADAM33	20	3655230	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	2038127	3655230	59370290	687	94691											
C20orf26	26074	broad.mit.edu	37	chr20	20177420	20177420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaatccagagaaggcaaGgtaagagaatggtgcaattc	11	7	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20177420	T	T	20177420	3	4	94	1	0	0	0	0	1	0	0	0	2128	1014	35	2	1887	2	C20orf26	20	20177420	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	16522190	20177420	42848100	688	94692											
C20orf26	26074	broad.mit.edu	37	chr20	20180558	20180558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatccggtgggtagcagGgcggcaggcagggcggcgcg	22	9	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20180558	T	T	20180558	1	4	94	0	1	0	0	0	0	0	0	0	2128	1247	43	2		2	C20orf26	20	20180558	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	3138	20180558	42844962	689	94693											
SSTR4	6754	broad.mit.edu	37	chr20	23016165	23016165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggggcgaggaagggctGgggacggcctggccctctgc	20	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23016165	T	T	23016165	2	4	94	1	0	0	0	0	0	0	0	1	15318	1335	47	2		2	SSTR4	20	23016165	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	2835607	23016165	40009355	690	94694											
BPIL1	80341	broad.mit.edu	37	chr20	31601577	31601577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcatggtgggctctgctGggcggtgctgctcgggctca	17	11	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31601577	T	T	31601577	1	4	94	0	1	0	0	0	0	0	0	0	1500	1363	47	2		2	BPIL1	20	31601577	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	8585412	31601577	31423943	691	94695											
BPIL1	80341	broad.mit.edu	37	chr20	31608184	31608184	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaaggtgaagcttcagggGaccacgtctgtgctggggta	15	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31608184	T	T	31608184	2	4	94	1	0	0	0	0	0	0	0	1	1500	1161	41	3		3	BPIL1	20	31608184	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	6607	31608184	31417336	692	94696											
PLUNC	51297	broad.mit.edu	37	chr20	31827564	31827564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggtttctgggtttggagCtagaggagctaatgtttccc	14	6	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31827564	T	T	31827564	1	4	94	0	1	0	0	0	0	0	0	0	12210	812	28	4		4	PLUNC	20	31827564	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	219380	31827564	31197956	693	94697											
ITCH	83737	broad.mit.edu	37	chr20	33001615	33001615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagacaataggagacttGtcaatttgtcttgatgggct	11	6	2	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33001615	T	T	33001615	3	4	94	1	0	0	0	0	1	0	0	0	7938	1368	48	3	419	3	ITCH	20	33001615	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1174051	33001615	30023905	694	94698											
EPB41L1	2036	broad.mit.edu	37	chr20	34761599	34761599	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccgtttgcctccatctgTctctctccgcgtgtggttcc	9	15	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34761599	G	G	34761599	1	3	94	0	1	0	0	0	0	0	0	0	5194	1682	58	5		5	EPB41L1	20	34761599	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	1759984	34761599	28263921	695	94699											
ACTR5	79913	broad.mit.edu	37	chr20	37380703	37380703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctgccttaaattatcttGtttctcccaagatgctccat	4	11	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37380703	T	T	37380703	1	4	94	0	1	0	0	0	0	0	0	0	215	1392	48	3		3	ACTR5	20	37380703	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	2619104	37380703	25644817	696	94700											
PPP1R16B	26051	broad.mit.edu	37	chr20	37536602	37536602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccggggcagggcagccaGgagtccctgtgtgtgctcct	16	12	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37536602	T	T	37536602	1	4	94	0	1	0	0	0	0	0	0	0	12467	1015	35	2		2	PPP1R16B	20	37536602	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	155899	37536602	25488918	697	94701											
ZNF335	63925	broad.mit.edu	37	chr20	44579020	44579020	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttacggttgaaactgagggGgatgaaaggtggctcaggtt	17	4	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44579020	A	A	44579020	1	1	94	0	1	0	0	0	0	0	0	0	17978	1247	43	4		4	ZNF335	20	44579020	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	7042418	44579020	18446500	698	94702											
SULF2	55959	broad.mit.edu	37	chr20	46311847	46311847	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaactggccgatgtggtaacCgtggtcggcggtgtatacga	15	8	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46311847	G	G	46311847	3	3	94	1	0	0	0	0	1	0	0	0	15489	652	23	4	1717	4	SULF2	20	46311847	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	1732827	46311847	16713673	699	94703											
PREX1	57580	broad.mit.edu	37	chr20	47245842	47245842	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcacagacagacaaactgaGgtgcagacagagccaaggct	11	10	1	5			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47245842	C	C	47245842	1	2	94	0	1	0	0	0	0	0	0	0	12582	1015	35	4		4	PREX1	20	47245842	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	933995	47245842	15779678	700	94704											
PREX1	57580	broad.mit.edu	37	chr20	47292735	47292735	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaggccctcacctgaGccagcagccagtccaccagc	11	17	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47292735	A	A	47292735	3	1	94	1	0	0	0	0	1	0	0	0	12582	971	34	4	3426	4	PREX1	20	47292735	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	46893	47292735	15732785	701	94705											
KCNB1	3745	broad.mit.edu	37	chr20	47990014	47990014	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcactcccccggttcctgaGagggtcatggtacatcccta	10	14	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47990014	T	T	47990014	3	4	94	1	0	0	0	0	1	0	0	0	8082	942	33	3	497	3	KCNB1	20	47990014	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	697279	47990014	15035506	702	94706											
SPO11	23626	broad.mit.edu	37	chr20	55903664	55903664	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaaacaaaagcaaaatcGtccccagtggattcggatga	9	9	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55903664	A	A	55903664	1	1	94	0	1	0	0	0	0	0	0	0	15195	1160	40	4		4	SPO11	20	55903664	5'Flank	SNP	G	TCGA-35-4123-01A-01D-1105-08	7913650	55903664	7121856	703	94707											
NPEPL1	79716	broad.mit.edu	37	chr20	57287640	57287640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtactcagggaagtacGtctggccctcccactccttc	9	15	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57287640	T	T	57287640	1	4	94	0	1	0	0	0	0	0	0	0	10669	1160	40	3		3	NPEPL1	20	57287640	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1383976	57287640	5737880	704	94708											
COL9A3	1299	broad.mit.edu	37	chr20	61449932	61449932	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctggctggggagacagCctttttccagtctggagaga	14	10	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61449932	A	A	61449932	1	1	94	0	1	0	0	0	0	0	0	0	3741	754	26	3		3	COL9A3	20	61449932	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	4162292	61449932	1575588	705	94709											
CBR3	874	broad.mit.edu	37	chr21	37518591	37518591	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgggggtcacggtcttatcGaggatcctggccaggcgtct	15	10	3	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37518591	C	C	37518591	2	2	94	1	0	0	0	0	0	0	0	1	2735	1045	37	4		4	CBR3	21	37518591	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08		37518591	10611304	706	94710											
DOPEY2	9980	broad.mit.edu	37	chr21	37617641	37617641	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagctcctgccacacggaCagcgagaacacgtcctcctt	8	16	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37617641	T	T	37617641	2	4	94	1	0	0	0	0	0	0	0	1	4748	477	17	4		4	DOPEY2	21	37617641	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	99050	37617641	10512254	707	94711											
ETS2	2114	broad.mit.edu	37	chr21	40194579	40194579	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaattgagtttaactcttttCcatccatgttcaccaaaggt	5	9	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40194579	T	T	40194579	1	4	94	0	1	0	0	0	0	0	0	0	5318	870	30	4		4	ETS2	21	40194579	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	2576938	40194579	7935316	708	94712											
DNMT3L	29947	broad.mit.edu	37	chr21	45671613	45671613	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggagtgggcactgagagGcagcagcagtgggcaaggtc	20	7	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45671613	A	A	45671613	1	1	94	0	1	0	0	0	0	0	0	0	4718	1218	42	4		4	DNMT3L	21	45671613	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	5477034	45671613	2458282	709	94713											
TRPM2	7226	broad.mit.edu	37	chr21	45825878	45825878	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatgcacatttttaccatCagtaagacgctggggcccaa	8	12	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45825878	A	A	45825878	2	1	94	1	0	0	0	0	0	0	0	1	16711	816	29	3		3	TRPM2	21	45825878	Silent	SNP	C	TCGA-35-4123-01A-01D-1105-08	154265	45825878	2304017	710	94714											
FTCD	10841	broad.mit.edu	37	chr21	47570097	47570097	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcgcagtagaaggcggccGcatccagcagagccttcagg	13	13	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47570097	A	A	47570097	3	1	94	1	0	0	0	0	1	0	0	0	6141	1087	38	4	815	4	FTCD	21	47570097	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	1744219	47570097	559798	711	94715											
DIP2A	23181	broad.mit.edu	37	chr21	47954024	47954024	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggactgggactgcctacattGaggtaatgactgttcctaac	11	9	0	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47954024	T	T	47954024	4	4	94	1	0	0	0	0	0	1	0	0	4567	1291	45	3	1583	3	DIP2A	21	47954024	Nonsense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	383927	47954024	175871	712	94716											
CCT8L2	150160	broad.mit.edu	37	chr22	17072677	17072677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacgggccgttgctggtGcatttggatgggcaggacca	16	8	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17072677	T	T	17072677	3	4	94	1	0	0	0	0	1	0	0	0	2991	1319	46	3	913	3	CCT8L2	22	17072677	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08		17072677	34231889	713	94717											
CECR1	51816	broad.mit.edu	37	chr22	17669245	17669245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacctgtttctccggcgtgGaagaagtaaggcagcttaac	11	10	2	1	rs116020027	by1000genomes	TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17669245	T	T	17669245	3	4	94	1	0	0	0	0	1	0	0	0	3235	1165	41	3	486	3	CECR1	22	17669245	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	596568	17669245	33635321	714	94718											
KREMEN1	83999	broad.mit.edu	37	chr22	29534514	29534514	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattgcacccagaattgaatCagagaagaactcttcttcat	6	9	4	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29534514	T	T	29534514	1	4	94	0	1	0	0	0	0	0	0	0	8513	841	29	4		4	KREMEN1	22	29534514	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	11865269	29534514	21770052	715	94719											
SEC14L3	266629	broad.mit.edu	37	chr22	30856245	30856245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttgtttgccaagctggGccaagctcccaccacgcctc	10	16	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30856245	T	T	30856245	1	4	94	0	1	0	0	0	0	0	0	0	14096	1218	42	3		3	SEC14L3	22	30856245	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	1321731	30856245	20448321	716	94720											
PLA2G3	50487	broad.mit.edu	37	chr22	31534744	31534744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatgttctgtgggcagcGgtcatgttcccggcaacaga	14	9	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31534744	T	T	31534744	3	4	94	1	0	0	0	0	1	0	0	0	12095	1116	39	1	997	1	PLA2G3	22	31534744	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	678499	31534744	19769822	717	94721											
SFI1	9814	broad.mit.edu	37	chr22	32011186	32011186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggcccgaagcagccccCgacggcaagcacaggcccgg	13	19	0	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32011186	A	A	32011186	3	1	94	1	0	0	0	0	1	0	0	0	14269	652	23	1	3331	1	SFI1	22	32011186	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	476442	32011186	19293380	718	94722											
ANKRD54	129138	broad.mit.edu	37	chr22	38229004	38229004	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcctctaggcactgggcAtggccctcctgcaggatatt	11	13	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38229004	G	G	38229004	2	3	94	1	0	0	0	0	0	0	0	1	680	214	8	5		5	ANKRD54	22	38229004	Silent	SNP	A	TCGA-35-4123-01A-01D-1105-08	6217818	38229004	13075562	719	94723											
ZC3H7B	23264	broad.mit.edu	37	chr22	41716673	41716673	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagagactgatggagagGcagaaacggaaggcggacat	15	9	0	4			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41716673	A	A	41716673	2	1	94	1	0	0	0	0	0	0	0	1	17699	1194	42	4		4	ZC3H7B	22	41716673	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	3487669	41716673	9587893	720	94724											
SAPS2	9701	broad.mit.edu	37	chr22	50869524	50869524	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggacgccacctttaggaaGggtttccctcagctttgtgg	12	10	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50869524	C	C	50869524	1	2	94	0	1	0	0	0	0	0	0	0	13949	1015	35	4		4	SAPS2	22	50869524	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	9152851	50869524	435042	721	94725											
ARSH	347527	broad.mit.edu	37	chrX	2947341	2947341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaggaagggcgtcccactCcgaccacgagttcctcttcc	11	15	1	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2947341	A	A	2947341	3	1	94	1	0	0	0	0	1	0	0	0	997	855	30	3	1283	3	ARSH	23	2947341	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08		2947341	152323219	722	94726											
ARSF	416	broad.mit.edu	37	chrX	3002330	3002330	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcccgaagtgaccagtgCcaccatccatataattatgg	8	12	0	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3002330	A	A	3002330	4	1	94	1	0	0	0	0	0	1	0	0	995	747	26	3	471	3	ARSF	23	3002330	Nonsense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	54989	3002330	152268230	723	94727											
FAM48B1	100130302	broad.mit.edu	37	chrX	24383507	24383507	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccagttggtagatcagaGgaaggaaggcaagccaaccc	14	9	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24383507	A	A	24383507	3	1	94	1	0	0	0	0	1	0	0	0	5624	1000	35	4	2632	4	FAM48B1	23	24383507	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	21381177	24383507	130887053	724	94728											
BCOR	54880	broad.mit.edu	37	chrX	39933725	39933726	+	Missense_Mutation	DNP	CC	AT	AT													aggattcccagggctgacgcCcatcttccacgggaggcttt							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	39933726	AT	AT	39933725	3	1	94	1	0	0	0	0	1	0	0	0	1391	623	22	2	4441	2	BCOR	23	39933725	Missense_Mutation	DNP	CC	TCGA-35-4123-01A-01D-1105-08	15550218	39933725	115336835	725	94729											
MAGED2	10916	broad.mit.edu	37	chrX	54839689	54839689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctggtggtctggtggagcGggtggggtgctggactgggt	23	5	2	0			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54839689	T	T	54839689	1	4	94	0	1	0	0	0	0	0	0	0	9276	1131	39	1		1	MAGED2	23	54839689	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	14905964	54839689	100430871	726	94730											
ZC4H2	55906	broad.mit.edu	37	chrX	64139199	64139199	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtggctcattctagaaggtCcccacaccttcccaagcaca	7	15	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64139199	A	A	64139199	1	1	94	0	1	0	0	0	0	0	0	0	17704	870	30	3		3	ZC4H2	23	64139199	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	9299510	64139199	91131361	727	94731											
HEPH	9843	broad.mit.edu	37	chrX	65411952	65411952	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attggatagaatggggtcagCcataatgttcttccttcaga	10	7	3	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65411952	T	T	65411952	1	4	94	0	1	0	0	0	0	0	0	0	7121	754	26	4		4	HEPH	23	65411952	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	1272753	65411952	89858608	728	94732											
ATP7A	538	broad.mit.edu	37	chrX	77254174	77254174	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaacggaatttaaggcgGgaagaaggtgagacactctt	13	5	1	3			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77254174	T	T	77254174	2	4	94	1	0	0	0	0	0	0	0	1	1194	1219	43	2		2	ATP7A	23	77254174	Silent	SNP	G	TCGA-35-4123-01A-01D-1105-08	11842222	77254174	78016386	729	94733											
PCDH11X	27328	broad.mit.edu	37	chrX	91715193	91715193	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctggcgatgcgccagtcTgtggagaacgacatccatgg	14	11	1	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91715193	G	G	91715193	1	3	94	0	1	0	0	0	0	0	0	0	11602	1595	55	5		5	PCDH11X	23	91715193	Intron	SNP	T	TCGA-35-4123-01A-01D-1105-08	14461019	91715193	63555367	730	94734											
CHRDL1	91851	broad.mit.edu	37	chrX	109919536	109919536	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgttctgcatacacgacTtgaacacatctggctgatct	7	12	4	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109919536	G	G	109919536	3	3	94	1	0	0	0	0	1	0	0	0	3404	1609	56	5	80	5	CHRDL1	23	109919536	Missense_Mutation	SNP	T	TCGA-35-4123-01A-01D-1105-08	18204343	109919536	45351024	731	94735											
SLC6A14	11254	broad.mit.edu	37	chrX	115582710	115582710	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcaaaaacaactgcttctCtgatgccattgtggtttgtt	8	8	2	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115582710	G	G	115582710	3	3	94	1	0	0	0	0	1	0	0	0	14791	913	32	4	1064	4	SLC6A14	23	115582710	Missense_Mutation	SNP	C	TCGA-35-4123-01A-01D-1105-08	5663174	115582710	39687850	732	94736											
GRIA3	2892	broad.mit.edu	37	chrX	122319800	122319800	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccatttgaattaccacgtaGatcacttggattcctccaat	5	11	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122319800	C	C	122319800	3	2	94	1	0	0	0	0	1	0	0	0	6835	942	33	4	232	4	GRIA3	23	122319800	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	6737090	122319800	32950760	733	94737											
RBMX2	51634	broad.mit.edu	37	chrX	129543515	129543515	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acactggtcaagaagagattCcaggaaataattctgttggc	10	7	2	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129543515	G	G	129543515	1	3	94	0	1	0	0	0	0	0	0	0	13260	870	30	4		4	RBMX2	23	129543515	Intron	SNP	C	TCGA-35-4123-01A-01D-1105-08	7223715	129543515	25727045	734	94738											
GPR50	9248	broad.mit.edu	37	chrX	150348520	150348520	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggtcatcacctggatcatGaccgtcctggctgtcctgcc	10	15	3	1			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150348520	T	T	150348520	3	4	94	1	0	0	0	0	1	0	0	0	6762	1290	45	3	471	3	GPR50	23	150348520	Missense_Mutation	SNP	G	TCGA-35-4123-01A-01D-1105-08	20805005	150348520	4922040	735	94739											
CETN2	1069	broad.mit.edu	37	chrX	151997692	151997693	+	Splice_Site	DNP	CC	AA	AA													ataattgtcttagctacttaCcattttctgggtcatcacag							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	151997693	AA	AA	151997692	5	1	94	1	0	0	0	0	0	0	1	0	3305	521	18	3	238	3	CETN2	23	151997692	Splice_Site	DNP	CC	TCGA-35-4123-01A-01D-1105-08	1649172	151997692	3272868	736	94740											
RENBP	5973	broad.mit.edu	37	chrX	153205701	153205702	+	Intron	DNP	GG	AA	AA													ctccagctgaggggagagcaGgggcaggcatctcagcagga							TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	153205702	AA	AA	153205701	1	1	94	0	1	0	0	0	0	0	0	0	13333	1015	35	4		4	RENBP	23	153205701	Intron	DNP	GG	TCGA-35-4123-01A-01D-1105-08	1208009	153205701	2064859	737	94741											
HCFC1	3054	broad.mit.edu	37	chrX	153223100	153223100	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgttctggaggctgtgggcGaggggagtgagcagcagaac	19	6	1	2			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153223100	T	T	153223100	1	4	94	0	1	0	0	0	0	0	0	0	7057	1073	37	3		3	HCFC1	23	153223100	Intron	SNP	G	TCGA-35-4123-01A-01D-1105-08	17399	153223100	2047460	738	94742											
SCNN1D	6339	broad.mit.edu	37	chr1	1223004	1223004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcccctggccggtgcggGggcaggggtgcaggtcaggt	20	12	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1223004	T	T	1223004	1	4	95	0	1	0	0	0	0	0	0	0	14042	1247	43	2		2	SCNN1D	1	1223004	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08		1223004	248027617	1	94743											
DVL1	1855	broad.mit.edu	37	chr1	1277441	1277441	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccactgtaccctcctcgCggttccggcgtcgggcacgc	12	17	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1277441	T	T	1277441	3	4	95	1	0	0	0	0	1	0	0	0	4875	768	27	4	1602	4	DVL1	1	1277441	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	54437	1277441	247973180	2	94744											
SSU72	29101	broad.mit.edu	37	chr1	1500234	1500234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacattgggcttgtcgggaGctggtcctggaagcttcacg	14	9	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1500234	T	T	1500234	3	4	95	1	0	0	0	0	1	0	0	0	15320	971	34	3	457	3	SSU72	1	1500234	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	222793	1500234	247750387	3	94745											
NADK	65220	broad.mit.edu	37	chr1	1687735	1687735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacagcagcgtcccgtctcCccccaggcagatgatgaagt	11	14	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1687735	T	T	1687735	3	4	95	1	0	0	0	0	1	0	0	0	10231	632	22	4	821	4	NADK	1	1687735	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	187501	1687735	247562886	4	94746											
KIAA0562	9731	broad.mit.edu	37	chr1	3761439	3761439	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggattctgaggaaagtaaaAgaagttcattgatggggagc	14	3	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3761439	G	G	3761439	1	3	95	0	1	0	0	0	0	0	0	0	8254	87	3	5		5	KIAA0562	1	3761439	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	2073704	3761439	245489182	5	94747											
CHD5	26038	broad.mit.edu	37	chr1	6215697	6215697	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttgtagttggtcagcgtGtggtaatcctcctccgagaa	12	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6215697	A	A	6215697	2	1	95	1	0	0	0	0	0	0	0	1	3359	1368	48	4		4	CHD5	1	6215697	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	2454258	6215697	243034924	6	94748											
GPR153	387509	broad.mit.edu	37	chr1	6313779	6313779	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccgacgccgtcacccaccAgcacagggaagcccatgagg	11	17	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6313779	G	G	6313779	3	3	95	1	0	0	0	0	1	0	0	0	6724	202	7	5	1060	5	GPR153	1	6313779	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	98082	6313779	242936842	7	94749											
PIK3CD	5293	broad.mit.edu	37	chr1	9782022	9782022	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccaccgccgccctcccatCtgcccaccagggggaagcac	10	21	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9782022	G	G	9782022	1	3	95	0	1	0	0	0	0	0	0	0	12010	928	32	4		4	PIK3CD	1	9782022	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3468243	9782022	239468599	8	94750											
PLOD1	5351	broad.mit.edu	37	chr1	12012720	12012720	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctcagcaaactggtggcCgagtgggagggccaggacag	16	10	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12012720	T	T	12012720	2	4	95	1	0	0	0	0	0	0	0	1	12196	639	23	4		4	PLOD1	1	12012720	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	2230698	12012720	237237901	9	94751											
PRAMEF4	400735	broad.mit.edu	37	chr1	12941574	12941574	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acattctagtgtccccttcaCtgtttcatcctcataggctg	6	13	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12941574	G	G	12941574	1	3	95	0	1	0	0	0	0	0	0	0	12541	580	20	4		4	PRAMEF4	1	12941574	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	928854	12941574	236309047	10	94752											
UBR4	23352	broad.mit.edu	37	chr1	19525042	19525042	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagaaactcaccagagtcTgtgtactgataggttgtgat	10	6	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19525042	C	C	19525042	3	2	95	1	0	0	0	0	1	0	0	0	17030	1580	55	5	15318	5	UBR4	1	19525042	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	6583468	19525042	229725579	11	94753											
AKR7A3	22977	broad.mit.edu	37	chr1	19611161	19611161	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccccagccatccacaCcaagcacccacagcttaccg	4	23	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19611161	T	T	19611161	1	4	95	0	1	0	0	0	0	0	0	0	476	522	18	4		4	AKR7A3	1	19611161	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	86119	19611161	229639460	12	94754											
HTR6	3362	broad.mit.edu	37	chr1	19992706	19992706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggcgcctggagcctcGccgctctcgcctccttcctg	11	19	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19992706	T	T	19992706	3	4	95	1	0	0	0	0	1	0	0	0	7521	1087	38	3	462	3	HTR6	1	19992706	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	381545	19992706	229257915	13	94755											
TMCO4	255104	broad.mit.edu	37	chr1	20009765	20009765	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccctgggtttgcccaaccTggtggggggtctcgcctgat	15	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20009765	A	A	20009765	3	1	95	1	0	0	0	0	1	0	0	0	16121	1580	55	5	235	5	TMCO4	1	20009765	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	17059	20009765	229240856	14	94756											
EPHB2	2048	broad.mit.edu	37	chr1	23191570	23191570	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgccagctaggcctgaccGagccacgcatttacatcagt	9	15	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23191570	T	T	23191570	4	4	95	1	0	0	0	0	0	1	0	0	5217	1059	37	3	1186	3	EPHB2	1	23191570	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	3181805	23191570	226059051	15	94757											
RPL11	6135	broad.mit.edu	37	chr1	24020265	24020265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtagtgggggtatgatgGcatctgactccttgttaccc	13	8	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24020265	T	T	24020265	1	4	95	0	1	0	0	0	0	0	0	0	13668	1218	42	3		3	RPL11	1	24020265	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	828695	24020265	225230356	16	94758											
MYOM3	127294	broad.mit.edu	37	chr1	24401721	24401721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcatggatgggtcctgcCctgtggtctcagccaggagc	13	13	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24401721	T	T	24401721	1	4	95	0	1	0	0	0	0	0	0	0	10187	638	22	4		4	MYOM3	1	24401721	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	381456	24401721	224848900	17	94759											
AHDC1	27245	broad.mit.edu	37	chr1	27874644	27874644	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgccgaaggccctcgactgtGagggcagtggtgacatgctg	16	11	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27874644	C	C	27874644	4	2	95	1	0	0	0	0	0	1	0	0	412	1294	45	4	832	4	AHDC1	1	27874644	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	3472923	27874644	221375977	18	94760											
ZCCHC17	51538	broad.mit.edu	37	chr1	31783128	31783128	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagcattacagcttaaatggGaagggccagcggaacatctg	13	8	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31783128	C	C	31783128	1	2	95	0	1	0	0	0	0	0	0	0	17711	1189	41	4		4	ZCCHC17	1	31783128	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3908484	31783128	217467493	19	94761											
SPOCD1	90853	broad.mit.edu	37	chr1	32263952	32263952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggggcagggctgcaCcacacgctgaaagagctccc	16	13	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32263952	A	A	32263952	1	1	95	0	1	0	0	0	0	0	0	0	15196	522	18	3		3	SPOCD1	1	32263952	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	480824	32263952	216986669	20	94762											
GNL2	29889	broad.mit.edu	37	chr1	38040519	38040519	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactatttgaaaatagacttCaacatcacaaagctcgtgga	6	9	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38040519	T	T	38040519	1	4	95	0	1	0	0	0	0	0	0	0	6600	841	29	4		4	GNL2	1	38040519	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5776567	38040519	211210102	21	94763											
MACF1	23499	broad.mit.edu	37	chr1	39801748	39801748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaaccaaacatcaaatttCctcatctaatgaatgtaaag	5	8	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39801748	A	A	39801748	3	1	95	1	0	0	0	0	1	0	0	0	9232	855	30	3	9579	3	MACF1	1	39801748	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1761229	39801748	209448873	22	94764											
MACF1	23499	broad.mit.edu	37	chr1	39847539	39847539	+	Intron	DEL	C	-	-													taacgcttctggggtcatttCctgcagtatattaggaacat							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39847539	-	-	39847539	6	5	95	0	1	1	0	1	0	0	0	0	9232	870	30	0		0	MACF1	1	39847539	Intron	DEL	C	TCGA-35-5375-01A-01D-1625-08	45791	39847539	209403082	23	94765											
TRIT1	54802	broad.mit.edu	37	chr1	40307580	40307580	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtgggatttggattttaTgtgcgctgataagacaaaat	11	4	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40307580	C	C	40307580	3	2	95	1	0	0	0	0	1	0	0	0	16685	1464	51	5	167	5	TRIT1	1	40307580	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	460041	40307580	208943041	24	94766											
ELOVL1	64834	broad.mit.edu	37	chr1	43831285	43831285	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacaacagcctccatcctgGctaaggactctggggaggta	11	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43831285	C	C	43831285	1	2	95	0	1	0	0	0	0	0	0	0	5115	1218	42	4		4	ELOVL1	1	43831285	5'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	3523705	43831285	205419336	25	94767											
MED8	112950	broad.mit.edu	37	chr1	43855444	43855444	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcacctgcattgcggcggCcgaggcggctgccacgattt	13	14	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43855444	A	A	43855444	1	1	95	0	1	0	0	0	0	0	0	0	9546	754	26	3		3	MED8	1	43855444	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	24159	43855444	205395177	26	94768											
ZYG11B	79699	broad.mit.edu	37	chr1	53238117	53238117	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaattcttaaaattttattGcctgtcacaaaacgtacttg	5	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53238117	C	C	53238117	1	2	95	0	1	0	0	0	0	0	0	0	18382	1334	46	4		4	ZYG11B	1	53238117	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	9382673	53238117	196012504	27	94769											
CDCP2	200008	broad.mit.edu	37	chr1	54605588	54605588	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccccatcgaaggccgccaGatggtcaaagtcacaggtct	12	13	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54605588	T	T	54605588	3	4	95	1	0	0	0	0	1	0	0	0	3124	933	33	3	398	3	CDCP2	1	54605588	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1367471	54605588	194645033	28	94770											
PGM1	5236	broad.mit.edu	37	chr1	64104534	64104534	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatttccagtaaaagcttaGactgctaaggtagcactgaa	8	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64104534	A	A	64104534	1	1	95	0	1	0	0	0	0	0	0	0	11892	957	33	4		4	PGM1	1	64104534	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	9498946	64104534	185146087	29	94771											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67243186	67243186	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaaattctgaggcaggcTgtatgtctgtacacaaaagt	10	6	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67243186	A	A	67243186	1	1	95	0	1	0	0	0	0	0	0	0	15841	1595	55	5		5	TCTEX1D1	1	67243186	3'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	3138652	67243186	182007435	30	94772											
LRRC7	57554	broad.mit.edu	37	chr1	70478698	70478698	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcatgtctctacgctcCaacaaattagaatttcttcc	4	12	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70478698	A	A	70478698	2	1	95	1	0	0	0	0	0	0	0	1	9107	581	21	2		2	LRRC7	1	70478698	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	3235512	70478698	178771923	31	94773											
C1orf173	127254	broad.mit.edu	37	chr1	75037223	75037223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtttttcctactaactcatCctgttggtgccaggtttctt	7	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037223	A	A	75037223	3	1	95	1	0	0	0	0	1	0	0	0	2034	855	30	3	425	3	C1orf173	1	75037223	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	4558525	75037223	174213398	32	94774											
LHX8	431707	broad.mit.edu	37	chr1	75622511	75622511	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttgcattcattttttaactGagttgataatgtgctcagaa	8	5	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75622511	T	T	75622511	1	4	95	0	1	0	0	0	0	0	0	0	8848	1305	45	3		3	LHX8	1	75622511	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	585288	75622511	173628110	33	94775											
LPHN2	23266	broad.mit.edu	37	chr1	82437443	82437443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggcaaatgtaaagataGttttgtctgttaggttttta	9	3	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82437443	T	T	82437443	1	4	95	0	1	0	0	0	0	0	0	0	9003	1044	36	3		3	LPHN2	1	82437443	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	6814932	82437443	166813178	34	94776											
MCOLN2	255231	broad.mit.edu	37	chr1	85422360	85422360	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtactttcagttactttgTattgtttacatcatggctct	6	7	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85422360	C	C	85422360	1	2	95	0	1	0	0	0	0	0	0	0	9489	1653	57	5		5	MCOLN2	1	85422360	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	2984917	85422360	163828261	35	94777											
COL24A1	255631	broad.mit.edu	37	chr1	86361916	86361916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactttatgcgtttcataCttagacaaagagaaaactta	5	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86361916	A	A	86361916	1	1	95	0	1	0	0	0	0	0	0	0	3715	580	20	3		3	COL24A1	1	86361916	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	939556	86361916	162888705	36	94778											
BARHL2	343472	broad.mit.edu	37	chr1	91182017	91182017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaccgtcgcccagtcgccCgagaagctcctggaatcgct	11	15	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91182017	A	A	91182017	1	1	95	0	1	0	0	0	0	0	0	0	1319	667	23	1		1	BARHL2	1	91182017	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4820101	91182017	158068604	37	94779											
BTBD8	284697	broad.mit.edu	37	chr1	92591622	92591623	+	Intron	DNP	GG	CT	CT													agaatgtggaagatgtatgaGgaattccttagtaaagtgtc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	92591623	CT	CT	92591622	1	2	95	0	1	0	0	0	0	0	0	0	1557	1015	35	4		4	BTBD8	1	92591622	Intron	DNP	GG	TCGA-35-5375-01A-01D-1625-08	1409605	92591622	156658999	38	94780											
FAM69A	388650	broad.mit.edu	37	chr1	93396891	93396891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatcattggaaggcctgGtgcccacaccgtatcaaaga	9	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93396891	T	T	93396891	1	4	95	0	1	0	0	0	0	0	0	0	5653	1276	44	3		3	FAM69A	1	93396891	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	805269	93396891	155853730	39	94781											
FNBP1L	54874	broad.mit.edu	37	chr1	94014930	94014930	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgatgatgaatttgaggAtgatgatcccttgcctgcta	11	6	0	6			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94014930	C	C	94014930	3	2	95	1	0	0	0	0	1	0	0	0	6024	333	12	5	1656	5	FNBP1L	1	94014930	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	618039	94014930	155235691	40	94782											
AGL	178	broad.mit.edu	37	chr1	100350316	100350316	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataagtaagttaccactagActgaattaagcagttttaag	7	5	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100350316	T	T	100350316	1	4	95	0	1	0	0	0	0	0	0	0	384	290	10	5		5	AGL	1	100350316	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	6335386	100350316	148900305	41	94783											
COL11A1	1301	broad.mit.edu	37	chr1	103449747	103449747	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaactccaagttttcCctacagttaaaatatataat	4	9	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103449747	A	A	103449747	4	1	95	1	0	0	0	0	0	1	0	0	3699	637	22	2	3065	2	COL11A1	1	103449747	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3099431	103449747	145800874	42	94784											
COL11A1	1301	broad.mit.edu	37	chr1	103488336	103488336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtttctgctggtacacctgGaccaaattcttcattagggg	10	9	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103488336	T	T	103488336	3	4	95	1	0	0	0	0	1	0	0	0	3699	1174	41	3	4453	3	COL11A1	1	103488336	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	38589	103488336	145762285	43	94785											
AMY2B	280	broad.mit.edu	37	chr1	104118311	104118311	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttagtaatgcaggttaTattaaaggagtaaaatatat	8	1	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104118311	C	C	104118311	1	2	95	0	1	0	0	0	0	0	0	0	595	1421	49	5		5	AMY2B	1	104118311	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	629975	104118311	145132310	44	94786											
AMY2B	280	broad.mit.edu	37	chr1	104119996	104119996	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgaaggcattggattctaGataaagtcattgaatgcaga	10	4	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104119996	C	C	104119996	1	2	95	0	1	0	0	0	0	0	0	0	595	957	33	4		4	AMY2B	1	104119996	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1685	104119996	145130625	45	94787											
AKNAD1	254268	broad.mit.edu	37	chr1	109377495	109377495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctggaggctgcatgaGgaaggggcctctttctgtgt	14	10	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109377495	T	T	109377495	1	4	95	0	1	0	0	0	0	0	0	0	464	1015	35	2		2	AKNAD1	1	109377495	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	5257499	109377495	139873126	46	94788											
GPSM2	29899	broad.mit.edu	37	chr1	109441226	109441226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatacataaaattgttctGcaaacttattttttcatcac	2	9	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109441226	A	A	109441226	1	1	95	0	1	0	0	0	0	0	0	0	6801	1334	46	4		4	GPSM2	1	109441226	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	63731	109441226	139809395	47	94789											
SARS	6301	broad.mit.edu	37	chr1	109774338	109774338	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacattcccatttatacccCctttttcatgaggaaggagg	7	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109774338	T	T	109774338	3	4	95	1	0	0	0	0	1	0	0	0	13956	623	22	4	699	4	SARS	1	109774338	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	333112	109774338	139476283	48	94790											
GSTM3	2947	broad.mit.edu	37	chr1	110282237	110282237	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggccccaaaagcataaccAttgagcctctgagccctatt	7	14	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110282237	T	T	110282237	1	4	95	0	1	0	0	0	0	0	0	0	6905	232	8	5		5	GSTM3	1	110282237	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	507899	110282237	138968384	49	94791											
DENND2D	79961	broad.mit.edu	37	chr1	111743052	111743052	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcggcgttggaagagcctGaacacccggcctaccacttg	12	13	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111743052	A	A	111743052	2	1	95	1	0	0	0	0	0	0	0	1	4471	1281	45	4		4	DENND2D	1	111743052	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	1460815	111743052	137507569	50	94792											
SYT6	148281	broad.mit.edu	37	chr1	114680557	114680557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgacttctgcttgtagaGctcaggcttgatgcggccaa	11	12	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114680557	T	T	114680557	3	4	95	1	0	0	0	0	1	0	0	0	15597	971	34	3	921	3	SYT6	1	114680557	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2937505	114680557	134570064	51	94793											
SYCP1	6847	broad.mit.edu	37	chr1	115420834	115420834	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagacaagtaagagtttAtataagataatataatgtgc	8	2	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115420834	T	T	115420834	1	4	95	0	1	0	0	0	0	0	0	0	15550	464	16	5		5	SYCP1	1	115420834	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	740277	115420834	133829787	52	94794											
CD58	965	broad.mit.edu	37	chr1	117057431	117057431	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcttcatcttctgttaCcaatcaattggagctacaaa	6	9	5	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117057431	G	G	117057431	1	3	95	0	1	0	0	0	0	0	0	0	3055	522	18	4		4	CD58	1	117057431	3'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	1636597	117057431	132193190	53	94795											
IGSF3	3321	broad.mit.edu	37	chr1	117209030	117209030	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttctggcaatccacttaTagctccagagaacagttttg	7	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117209030	C	C	117209030	1	2	95	0	1	0	0	0	0	0	0	0	7671	1421	49	5		5	IGSF3	1	117209030	5'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	151599	117209030	132041591	54	94796											
SPAG17	200162	broad.mit.edu	37	chr1	118609489	118609489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggtagtaagaatcaaCacacctatattgcttatggg	11	6	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118609489	A	A	118609489	3	1	95	1	0	0	0	0	1	0	0	0	15095	478	17	3	4376	3	SPAG17	1	118609489	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1400459	118609489	130641132	55	94797											
CTSK	1513	broad.mit.edu	37	chr1	150769478	150769478	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggtacacaaaaatgaatAtgatgttttttaactttaaa	6	3	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150769478	C	C	150769478	1	2	95	0	1	0	0	0	0	0	0	0	4071	464	16	5		5	CTSK	1	150769478	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	32159989	150769478	98481143	56	94798											
SETDB1	9869	broad.mit.edu	37	chr1	150933451	150933451	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtggctgcaatccaccTtcctccgaagagacacccaa	9	14	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150933451	G	G	150933451	2	3	95	1	0	0	0	0	0	0	0	1	14251	1596	56	5		5	SETDB1	1	150933451	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	163973	150933451	98317170	57	94799											
LCE2A	353139	broad.mit.edu	37	chr1	152671721	152671721	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacctcgaacatcacagagCaacccttatggagaaacttg	8	11	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152671721	A	A	152671721	1	1	95	0	1	0	0	0	0	0	0	0	8737	725	25	3		3	LCE2A	1	152671721	3'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	1738270	152671721	96578900	58	94800											
GATAD2B	57459	broad.mit.edu	37	chr1	153789997	153789997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagggtggtattggtagCtgaacggatgacactgtgac	16	5	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153789997	A	A	153789997	3	1	95	1	0	0	0	0	1	0	0	0	6323	797	28	3	1054	3	GATAD2B	1	153789997	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1118276	153789997	95460624	59	94801											
JTB	10899	broad.mit.edu	37	chr1	153949472	153949472	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgacagcttctcttcctgcAcgggagcctctgcttggctg	11	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153949472	T	T	153949472	3	4	95	1	0	0	0	0	1	0	0	0	8037	159	6	5	355	5	JTB	1	153949472	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	159475	153949472	95301149	60	94802											
ARHGEF2	9181	broad.mit.edu	37	chr1	155922385	155922385	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattctgtgacggtgagtgcTtgagcctggactcttccctg	12	11	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155922385	A	A	155922385	1	1	95	0	1	0	0	0	0	0	0	0	905	1624	56	5		5	ARHGEF2	1	155922385	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1972913	155922385	93328236	61	94803											
BCAN	63827	broad.mit.edu	37	chr1	156628186	156628186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcagaacgtgttccagaCcatgggagagctaacaagtt	12	8	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156628186	A	A	156628186	1	1	95	0	1	0	0	0	0	0	0	0	1350	522	18	3		3	BCAN	1	156628186	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	705801	156628186	92622435	62	94804											
FCRL3	115352	broad.mit.edu	37	chr1	157660129	157660129	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagtttccagaatgttctgTagtcagagagaggttgaagg	14	4	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157660129	A	A	157660129	3	1	95	1	0	0	0	0	1	0	0	0	5853	1638	57	5	626	5	FCRL3	1	157660129	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	1031943	157660129	91590492	63	94805											
FCRL2	79368	broad.mit.edu	37	chr1	157739907	157739907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccttcgatgggctggaagGagctggcagtcagcacagga	15	11	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157739907	T	T	157739907	3	4	95	1	0	0	0	0	1	0	0	0	5852	1174	41	3	1218	3	FCRL2	1	157739907	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	79778	157739907	91510714	64	94806											
FCRL1	115350	broad.mit.edu	37	chr1	157773709	157773709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctcgcaccagtatgacCctgtgtcttctttccacatg	8	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157773709	A	A	157773709	3	1	95	1	0	0	0	0	1	0	0	0	5851	623	22	2	1146	2	FCRL1	1	157773709	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	33802	157773709	91476912	65	94807											
CD1C	911	broad.mit.edu	37	chr1	158262801	158262801	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttaaagaatagtggagtAagacctaagggatacatgga	11	3	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158262801	G	G	158262801	1	3	95	0	1	0	0	0	0	0	0	0	3006	377	13	5		5	CD1C	1	158262801	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	489092	158262801	90987820	66	94808											
CD1B	910	broad.mit.edu	37	chr1	158301139	158301139	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccagtgctgggagctgccAgagtgactcttaccatgttc	11	12	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158301139	G	G	158301139	1	3	95	0	1	0	0	0	0	0	0	0	3005	203	7	5		5	CD1B	1	158301139	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	38338	158301139	90949482	67	94809											
OR10R2	343406	broad.mit.edu	37	chr1	158450117	158450117	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccatttgtcaccctctGcattaccccactcttatgag	6	15	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450117	T	T	158450117	2	4	95	1	0	0	0	0	0	0	0	1	11011	1306	46	3		3	OR10R2	1	158450117	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	148978	158450117	90800504	68	94810											
SPTA1	6708	broad.mit.edu	37	chr1	158612648	158612648	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggattcatcacaggctgtggGcagcatctcactgatccatt	10	11	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158612648	A	A	158612648	3	1	95	1	0	0	0	0	1	0	0	0	15234	1203	42	4	2782	4	SPTA1	1	158612648	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	162531	158612648	90637973	69	94811											
SPTA1	6708	broad.mit.edu	37	chr1	158624419	158624419	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttattgatggaactgagCagcgttaagacatcaccttt	8	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158624419	G	G	158624419	2	3	95	1	0	0	0	0	0	0	0	1	15234	697	25	4		4	SPTA1	1	158624419	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	11771	158624419	90626202	70	94812											
SPTA1	6708	broad.mit.edu	37	chr1	158636289	158636289	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcatgcaactgggtcccTgggagaagacataaggtaga	13	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158636289	C	C	158636289	5	2	95	1	0	0	0	0	0	0	1	0	15234	1594	55	5	5370	5	SPTA1	1	158636289	Splice_Site	SNP	T	TCGA-35-5375-01A-01D-1625-08	11870	158636289	90614332	71	94813											
SPTA1	6708	broad.mit.edu	37	chr1	158646201	158646201	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataatttagaaatcgacaTatgaatagatttctattaat	4	3	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158646201	C	C	158646201	1	2	95	0	1	0	0	0	0	0	0	0	15234	1421	49	5		5	SPTA1	1	158646201	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	9912	158646201	90604420	72	94814											
NOS1AP	9722	broad.mit.edu	37	chr1	162124198	162124198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttctcccccacagtacGtaggaagcctggacgtgcca	10	14	1	0	rs141560292		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162124198	T	T	162124198	3	4	95	1	0	0	0	0	1	0	0	0	10637	1145	40	3	115	3	NOS1AP	1	162124198	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	3477997	162124198	87126423	73	94815											
DDR2	4921	broad.mit.edu	37	chr1	162729653	162729653	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgatttcacccagacccatGaataccacgtgtggcccggc	9	15	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162729653	T	T	162729653	4	4	95	1	0	0	0	0	0	1	0	0	4370	1291	45	3	761	3	DDR2	1	162729653	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	605455	162729653	86520968	74	94816											
ILDR2	387597	broad.mit.edu	37	chr1	166906009	166906009	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaatccacactcgaggCagcccacctccagggcaggg	11	14	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166906009	T	T	166906009	1	4	95	0	1	0	0	0	0	0	0	0	7780	725	25	4		4	ILDR2	1	166906009	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4176356	166906009	82344612	75	94817											
ADCY10	55811	broad.mit.edu	37	chr1	167825402	167825402	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatagaaagaggttacttaCgagtccagttctttggagat	11	5	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167825402	T	T	167825402	5	4	95	1	0	0	0	0	0	0	1	0	293	550	19	4	2728	4	ADCY10	1	167825402	Splice_Site	SNP	C	TCGA-35-5375-01A-01D-1625-08	919393	167825402	81425219	76	94818											
TBX19	9095	broad.mit.edu	37	chr1	168278154	168278154	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcgctcattggtcgtcttGggggtttactttagcactgg	12	9	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168278154	A	A	168278154	1	1	95	0	1	0	0	0	0	0	0	0	15776	1363	47	4		4	TBX19	1	168278154	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	452752	168278154	80972467	77	94819											
SELE	6401	broad.mit.edu	37	chr1	169694839	169694839	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgtagagaagatacctctCtcataaccatttgtgattta	6	8	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169694839	A	A	169694839	1	1	95	0	1	0	0	0	0	0	0	0	14126	928	32	3		3	SELE	1	169694839	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1416685	169694839	79555782	78	94820											
FMO1	2326	broad.mit.edu	37	chr1	171247809	171247810	+	Intron	DEL	TA	-	-													gttatcaactgaagaatattTatgtttcattcactgatcct							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171247810	-	-	171247809	6	5	95	0	1	1	0	1	0	0	0	0	6012	1769	61	0		0	FMO1	1	171247809	Intron	DEL	TA	TCGA-35-5375-01A-01D-1625-08	1552970	171247809	78002812	79	94821											
C1orf105	92346	broad.mit.edu	37	chr1	172425550	172425550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctctgtctctctttcccCtcaggccaggaggaaccagt	8	15	5	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172425550	A	A	172425550	1	1	95	0	1	0	0	0	0	0	0	0	1999	696	24	2		2	C1orf105	1	172425550	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1177741	172425550	76825071	80	94822											
SLC9A11	284525	broad.mit.edu	37	chr1	173486708	173486708	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacagatgacggtatattCaatttcacgcttaagcagac	7	9	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173486708	A	A	173486708	4	1	95	1	0	0	0	0	0	1	0	0	14825	835	29	3	523	3	SLC9A11	1	173486708	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1061158	173486708	75763913	81	94823											
SLC9A11	284525	broad.mit.edu	37	chr1	173516881	173516881	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccattaaagcttcatctgTtgtggattctgtcttcatat	6	9	5	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173516881	A	A	173516881	3	1	95	1	0	0	0	0	1	0	0	0	14825	1725	60	5	1934	5	SLC9A11	1	173516881	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	30173	173516881	75733740	82	94824											
TNR	7143	broad.mit.edu	37	chr1	175306575	175306575	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gataaaaggatggccaggagGatggtgaagttggcttggca	17	4	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175306575	C	C	175306575	1	2	95	0	1	0	0	0	0	0	0	0	16461	1189	41	4		4	TNR	1	175306575	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1789694	175306575	73944046	83	94825											
TNR	7143	broad.mit.edu	37	chr1	175331943	175331944	+	Nonsense_Mutation	DNP	CC	AA	AA													cactgagctgtctagtcgtcCcactggagaagagaagaatc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	175331944	AA	AA	175331943	4	1	95	1	0	0	0	0	0	1	0	0	16461	632	22	2	1406	2	TNR	1	175331943	Nonsense_Mutation	DNP	CC	TCGA-35-5375-01A-01D-1625-08	25368	175331943	73918678	84	94826											
PAPPA2	60676	broad.mit.edu	37	chr1	176564366	176564366	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagggcctaaaccccattgtGagtgaggagcagattcgtct	13	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176564366	T	T	176564366	2	4	95	1	0	0	0	0	0	0	0	1	11527	1277	45	3		3	PAPPA2	1	176564366	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	1232423	176564366	72686255	85	94827											
PAPPA2	60676	broad.mit.edu	37	chr1	176760628	176760628	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatgggattggtaaggataGgagtgaatcttaaagtcaat	12	2	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176760628	A	A	176760628	1	1	95	0	1	0	0	0	0	0	0	0	11527	1015	35	4		4	PAPPA2	1	176760628	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	196262	176760628	72489993	86	94828											
ASTN1	460	broad.mit.edu	37	chr1	176915038	176915038	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccaacagtcttgaacaatCagttctatgtatatgaggtt	7	8	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176915038	T	T	176915038	1	4	95	0	1	0	0	0	0	0	0	0	1068	841	29	4		4	ASTN1	1	176915038	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	154410	176915038	72335583	87	94829											
C1orf49	84066	broad.mit.edu	37	chr1	178489836	178489836	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagagcaccaaaggagcagCaggaactcaggctgatggga	15	8	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178489836	G	G	178489836	3	3	95	1	0	0	0	0	1	0	0	0	2063	711	25	4	420	4	C1orf49	1	178489836	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1574798	178489836	70760785	88	94830											
RALGPS2	55103	broad.mit.edu	37	chr1	178834026	178834026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcatttattatgagcattGtttcataaggcataaaaata	6	4	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178834026	T	T	178834026	1	4	95	0	1	0	0	0	0	0	0	0	13126	1392	48	3		3	RALGPS2	1	178834026	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	344190	178834026	70416595	89	94831											
NPHS2	7827	broad.mit.edu	37	chr1	179533922	179533922	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcccctaagccggaggatTtggtaccttaaaaaaattaa	9	8	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179533922	G	G	179533922	3	3	95	1	0	0	0	0	1	0	0	0	10678	1841	64	5	898	5	NPHS2	1	179533922	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	699896	179533922	69716699	90	94832											
TDRD5	163589	broad.mit.edu	37	chr1	179587773	179587773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttattgcacagattggaCctggaggaactatcagttca	10	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179587773	A	A	179587773	3	1	95	1	0	0	0	0	1	0	0	0	15855	507	18	3	885	3	TDRD5	1	179587773	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	53851	179587773	69662848	91	94833											
CACNA1E	777	broad.mit.edu	37	chr1	181547026	181547026	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgagcatctgccattctttCtgctctgctaagaactttct	7	11	5	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181547026	T	T	181547026	1	4	95	0	1	0	0	0	0	0	0	0	2568	928	32	4		4	CACNA1E	1	181547026	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1959253	181547026	67703595	92	94834											
CACNA1E	777	broad.mit.edu	37	chr1	181549852	181549852	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtttgataacatccttttTgctgtgctgactgtcttcca	7	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181549852	A	A	181549852	3	1	95	1	0	0	0	0	1	0	0	0	2568	1809	63	5	913	5	CACNA1E	1	181549852	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2826	181549852	67700769	93	94835											
CACNA1E	777	broad.mit.edu	37	chr1	181728081	181728081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtctttgttgaaggggaGgtggttactgctattccaga	13	7	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181728081	T	T	181728081	1	4	95	0	1	0	0	0	0	0	0	0	2568	1015	35	2		2	CACNA1E	1	181728081	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	178229	181728081	67522540	94	94836											
GLUL	2752	broad.mit.edu	37	chr1	182357841	182357841	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtacacctgcttgatgcctTtatttaagtgggaacttgct	9	8	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182357841	C	C	182357841	3	2	95	1	0	0	0	0	1	0	0	0	6542	1841	64	5	1113	5	GLUL	1	182357841	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	629760	182357841	66892780	95	94837											
RGS8	85397	broad.mit.edu	37	chr1	182615840	182615840	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaagtggaggggaaagcCggtgatttccaggagttccc	15	9	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182615840	A	A	182615840	1	1	95	0	1	0	0	0	0	0	0	0	13421	667	23	1		1	RGS8	1	182615840	3'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	257999	182615840	66634781	96	94838											
LAMC1	3915	broad.mit.edu	37	chr1	183097701	183097701	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacttgtgtgtcctacctTtcccttttctttcttcttta	3	11	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183097701	G	G	183097701	1	3	95	0	1	0	0	0	0	0	0	0	8686	1856	64	5		5	LAMC1	1	183097701	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	481861	183097701	66152920	97	94839											
HMCN1	83872	broad.mit.edu	37	chr1	186134328	186134328	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtacagagataaataaagGgttttcttttaatgaaaatg	8	2	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186134328	C	C	186134328	1	2	95	0	1	0	0	0	0	0	0	0	7287	1247	43	4		4	HMCN1	1	186134328	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3036627	186134328	63116293	98	94840											
PRG4	10216	broad.mit.edu	37	chr1	186277271	186277271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcttgcacccaccaccaCcaaggggcccacatccacca	8	19	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186277271	A	A	186277271	3	1	95	1	0	0	0	0	1	0	0	0	12587	507	18	3	2442	3	PRG4	1	186277271	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	142943	186277271	62973350	99	94841											
RGS18	64407	broad.mit.edu	37	chr1	192127743	192127743	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaaggatgtaataaattaGacatctcttcattttagaga	9	4	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192127743	T	T	192127743	1	4	95	0	1	0	0	0	0	0	0	0	13409	957	33	3		3	RGS18	1	192127743	5'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	5850472	192127743	57122878	100	94842											
CFHR4	10877	broad.mit.edu	37	chr1	196871560	196871560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacaagaagtgaaaccttGtgattttccagaaattcaac	6	7	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196871560	T	T	196871560	3	4	95	1	0	0	0	0	1	0	0	0	3317	1377	48	3	77	3	CFHR4	1	196871560	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	4743817	196871560	52379061	101	94843											
PTPRC	5788	broad.mit.edu	37	chr1	198711119	198711119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagagtgaatgccttcaGcaatttcttcagtggtccca	10	9	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198711119	T	T	198711119	3	4	95	1	0	0	0	0	1	0	0	0	12905	971	34	3	2620	3	PTPRC	1	198711119	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1839559	198711119	50539502	102	94844											
LAD1	3898	broad.mit.edu	37	chr1	201355596	201355596	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtggctgggcttcccccaGaggctggcggctcctgcgcc	16	15	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201355596	T	T	201355596	3	4	95	1	0	0	0	0	1	0	0	0	8671	942	33	3	692	3	LAD1	1	201355596	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2644477	201355596	47895025	103	94845											
LAD1	3898	broad.mit.edu	37	chr1	201358337	201358337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctggctgagcctgggagCctcatcgtccgtggtggagc	15	11	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201358337	A	A	201358337	3	1	95	1	0	0	0	0	1	0	0	0	8671	739	26	3	1456	3	LAD1	1	201358337	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2741	201358337	47892284	104	94846											
IPO9	55705	broad.mit.edu	37	chr1	201844051	201844051	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttatctgacattcttgcTacaagtaaatatggtaagct	6	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201844051	G	G	201844051	2	3	95	1	0	0	0	0	0	0	0	1	7869	1509	53	5		5	IPO9	1	201844051	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	485714	201844051	47406570	105	94847											
SYT2	127833	broad.mit.edu	37	chr1	202565790	202565790	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccacccaacaaatgaaagAaaaaagaaaacctctaaggt	5	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202565790	T	T	202565790	1	4	95	0	1	0	0	0	0	0	0	0	15593	261	9	5		5	SYT2	1	202565790	3'UTR	SNP	A	TCGA-35-5375-01A-01D-1625-08	721739	202565790	46684831	106	94848											
CHI3L1	1116	broad.mit.edu	37	chr1	203150442	203150442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggggatggagggtgaggCaggaaattattaatagaaaa	16	1	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203150442	A	A	203150442	1	1	95	0	1	0	0	0	0	0	0	0	3371	725	25	3		3	CHI3L1	1	203150442	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	584652	203150442	46100179	107	94849											
CHIT1	1118	broad.mit.edu	37	chr1	203192741	203192741	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaacctgatggccgagTtgacaaaggtctgacggttg	14	8	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203192741	A	A	203192741	3	1	95	1	0	0	0	0	1	0	0	0	3377	1725	60	5	1066	5	CHIT1	1	203192741	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	42299	203192741	46057880	108	94850											
OPTC	26254	broad.mit.edu	37	chr1	203467947	203467947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcatcagccgtatcagggCcgaagacttcaaagggctga	12	12	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203467947	A	A	203467947	3	1	95	1	0	0	0	0	1	0	0	0	10982	739	26	3	519	3	OPTC	1	203467947	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	275206	203467947	45782674	109	94851											
IL10	3586	broad.mit.edu	37	chr1	206945736	206945736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctgggctggccctcacCccagtcaggaggaccaggca	14	15	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206945736	A	A	206945736	2	1	95	1	0	0	0	0	0	0	0	1	7689	610	22	2		2	IL10	1	206945736	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	3477789	206945736	42304885	110	94852											
RCOR3	55758	broad.mit.edu	37	chr1	211468956	211468956	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatattcttttcacttaattGagtactcacaaatttaccta	2	8	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211468956	A	A	211468956	1	1	95	0	1	0	0	0	0	0	0	0	13292	1305	45	4		4	RCOR3	1	211468956	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	4523220	211468956	37781665	111	94853											
INTS7	25896	broad.mit.edu	37	chr1	212151610	212151610	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagattcaaaatgggctttTtaccagaagttcttgttgct	10	6	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212151610	A	A	212151610	1	1	95	0	1	0	0	0	0	0	0	0	7853	1856	64	5		5	INTS7	1	212151610	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	682654	212151610	37099011	112	94854											
CENPF	1063	broad.mit.edu	37	chr1	214818865	214818865	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcagttgtctgaaaaaatGaaggagaaaacacaagagct	10	5	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214818865	A	A	214818865	3	1	95	1	0	0	0	0	1	0	0	0	3261	1290	45	4	5998	4	CENPF	1	214818865	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2667255	214818865	34431756	113	94855											
HHIPL2	79802	broad.mit.edu	37	chr1	222696210	222696210	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttctctgattgttccttTagcaagtccaagactgtctc	7	11	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	222696210	C	C	222696210	2	2	95	1	0	0	0	0	0	0	0	1	7161	1741	61	5		5	HHIPL2	1	222696210	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	7877345	222696210	26554411	114	94856											
HIST3H3	8290	broad.mit.edu	37	chr1	228612717	228612717	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggttggtgtcctcaaacaGccccaccaggtaagactcgc	10	14	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228612717	A	A	228612717	2	1	95	1	0	0	0	0	0	0	0	1	7251	962	34	4		4	HIST3H3	1	228612717	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	5916507	228612717	20637904	115	94857											
COG2	22796	broad.mit.edu	37	chr1	230795245	230795245	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcattttgtgtctgactgTaggaagcgggtccagctgga	14	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230795245	C	C	230795245	2	2	95	1	0	0	0	0	0	0	0	1	3690	1644	57	5		5	COG2	1	230795245	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	2182528	230795245	18455376	116	94858											
LYST	1130	broad.mit.edu	37	chr1	235865984	235865984	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattcatcacctgggagagTgcctggcatcacaagagtct	10	11	4	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235865984	G	G	235865984	1	3	95	0	1	0	0	0	0	0	0	0	9216	1711	59	5		5	LYST	1	235865984	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	5070739	235865984	13384637	117	94859											
NID1	4811	broad.mit.edu	37	chr1	236148585	236148585	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgagaaatgtttgtgaaaGtttggcttcatttgctgttc	10	5	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236148585	C	C	236148585	1	2	95	0	1	0	0	0	0	0	0	0	10509	1044	36	4		4	NID1	1	236148585	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	282601	236148585	13102036	118	94860											
NID1	4811	broad.mit.edu	37	chr1	236212142	236212142	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgatggagggggataagtCttctcgataataaaccttcc	11	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236212142	A	A	236212142	3	1	95	1	0	0	0	0	1	0	0	0	10509	913	32	3	3446	3	NID1	1	236212142	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	63557	236212142	13038479	119	94861											
RYR2	6262	broad.mit.edu	37	chr1	237551449	237551449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggacgagtgtctcactGtcccttcaggagaacatggt	11	10	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237551449	T	T	237551449	3	4	95	1	0	0	0	0	1	0	0	0	13880	1377	48	3	777	3	RYR2	1	237551449	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1339307	237551449	11699172	120	94862											
RYR2	6262	broad.mit.edu	37	chr1	237789019	237789019	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatttaacaattagaggGcgtctgctatccctggtaga	11	7	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237789019	T	T	237789019	2	4	95	1	0	0	0	0	0	0	0	1	13880	1190	42	3		3	RYR2	1	237789019	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	237570	237789019	11461602	121	94863											
RYR2	6262	broad.mit.edu	37	chr1	237972319	237972319	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatacaccagatatgaaatGtgacgatatgctaacagtaa	8	6	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237972319	A	A	237972319	3	1	95	1	0	0	0	0	1	0	0	0	13880	1377	48	4	14815	4	RYR2	1	237972319	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	183300	237972319	11278302	122	94864											
ZP4	57829	broad.mit.edu	37	chr1	238048522	238048522	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaagctgaaggtgaagatGctgaagcgctggtggtgaga	16	5	0	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238048522	A	A	238048522	2	1	95	1	0	0	0	0	0	0	0	1	18347	1310	46	4		4	ZP4	1	238048522	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	76203	238048522	11202099	123	94865											
FMN2	56776	broad.mit.edu	37	chr1	240308322	240308323	+	Intron	INS	-	G	G													gtcagcagcaaaatgctcatINStctccccaggggccatgttc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240308323	G	G	240308322	6	5	95	0	1	1	1	0	0	0	0	0	6008	1508	52	0		0	FMN2	1	240308322	Intron	INS	-	TCGA-35-5375-01A-01D-1625-08	2259800	240308322	8942299	124	94866											
RGS7	6000	broad.mit.edu	37	chr1	240978226	240978226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaaatagaagcagaggGctcttaaagagttaacaaaa	8	4	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240978226	T	T	240978226	1	4	95	0	1	0	0	0	0	0	0	0	13419	1218	42	3		3	RGS7	1	240978226	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	669904	240978226	8272395	125	94867											
FH	2271	broad.mit.edu	37	chr1	241661252	241661252	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgctgtcttagcaatcTttgctgccttgtcataccct	8	11	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241661252	C	C	241661252	3	2	95	1	0	0	0	0	1	0	0	0	5932	1609	56	5	127	5	FH	1	241661252	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	683026	241661252	7589369	126	94868											
OR2C3	81472	broad.mit.edu	37	chr1	247695586	247695586	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggagctgtgggacaatgctCgtggtgaagctcatgtccag	15	8	1	1	rs143777369		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247695586	G	G	247695586	2	3	95	1	0	0	0	0	0	0	0	1	11087	871	31	4		4	OR2C3	1	247695586	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	6034334	247695586	1555035	127	94869											
C1orf150	148823	broad.mit.edu	37	chr1	247737764	247737764	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgaagttgttcaccctgaGcagtgcatgaaacattcctt	10	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247737764	A	A	247737764	1	1	95	0	1	0	0	0	0	0	0	0	2024	986	34	4		4	C1orf150	1	247737764	3'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	42178	247737764	1512857	128	94870											
OR2L3	391192	broad.mit.edu	37	chr1	248224182	248224182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctacttagtcagctctccCtcattgacctaaattacatc	3	14	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224182	A	A	248224182	3	1	95	1	0	0	0	0	1	0	0	0	11102	681	24	2	201	2	OR2L3	1	248224182	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	486418	248224182	1026439	129	94871											
OR2M5	127059	broad.mit.edu	37	chr1	248309310	248309310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactcccatgctgaatccCctcatctacagcctccgcaa	4	19	3	1	rs150067628	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248309310	A	A	248309310	2	1	95	1	0	0	0	0	0	0	0	1	11107	610	22	2		2	OR2M5	1	248309310	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	85128	248309310	941311	130	94872											
OR2T4	127074	broad.mit.edu	37	chr1	248525191	248525191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattgtctctcatggacatGgcgtacatttctgtcactgt	8	10	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248525191	T	T	248525191	3	4	95	1	0	0	0	0	1	0	0	0	11121	1348	47	2	311	2	OR2T4	1	248525191	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	215881	248525191	725430	131	94873											
OR2T27	403239	broad.mit.edu	37	chr1	248814155	248814155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaacccagaaggataaagtCggcatacacggaataattgc	9	9	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248814155	A	A	248814155	3	1	95	1	0	0	0	0	1	0	0	0	11115	884	31	3	925	3	OR2T27	1	248814155	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	288964	248814155	436466	132	94874											
OR14I1	401994	broad.mit.edu	37	chr1	248844994	248844994	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaataaagcatcccagaacCaagcatgagctcagggccag	10	11	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248844994	T	T	248844994	2	4	95	1	0	0	0	0	0	0	0	1	11041	593	21	4		4	OR14I1	1	248844994	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	30839	248844994	405627	133	94875											
SNTG2	54221	broad.mit.edu	37	chr2	1251177	1251177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagacccaagttcctagcaCtgaagggcccgtccttctac	8	15	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1251177	A	A	1251177	3	1	95	1	0	0	0	0	1	0	0	0	14989	564	20	3	1013	3	SNTG2	2	1251177	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08		1251177	241948196	134	94876											
TSSC1	7260	broad.mit.edu	37	chr2	3196338	3196338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatgagagtggttgtagCggacgttccacaccctgcaa	13	10	1	1	rs143510261		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3196338	A	A	3196338	3	1	95	1	0	0	0	0	1	0	0	0	16791	768	27	3	335	3	TSSC1	2	3196338	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1945161	3196338	240003035	135	94877											
RNF144A	9781	broad.mit.edu	37	chr2	7154836	7154836	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgtttgcatttttttttCccttagattgagtgcatggt	8	7	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7154836	T	T	7154836	1	4	95	0	1	0	0	0	0	0	0	0	13556	870	30	4		4	RNF144A	2	7154836	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3958498	7154836	236044537	136	94878											
HS1BP3	64342	broad.mit.edu	37	chr2	20818972	20818972	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtttgggctcagctccCaggttcagaatctggtccaa	12	10	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20818972	A	A	20818972	2	1	95	1	0	0	0	0	0	0	0	1	7428	581	21	2		2	HS1BP3	2	20818972	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	13664136	20818972	222380401	137	94879											
C2orf44	80304	broad.mit.edu	37	chr2	24260629	24260630	+	Frame_Shift_Ins	INS	-	T	T													cccattatgcagacggtttgINStaagttcagaaagacaccgt							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24260630	T	T	24260629	7	5	95	1	0	1	1	0	0	0	0	0	2190	1377	48	0	441	0	C2orf44	2	24260629	Frame_Shift_Ins	INS	-	TCGA-35-5375-01A-01D-1625-08	3441657	24260629	218938744	138	94880											
C2orf44	80304	broad.mit.edu	37	chr2	24261821	24261821	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagcgctgtcccaaatatAagaatgcaggctgctgccta	10	11	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24261821	C	C	24261821	3	2	95	1	0	0	0	0	1	0	0	0	2190	362	13	5	1633	5	C2orf44	2	24261821	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1192	24261821	218937552	139	94881											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27891686	27891686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttggattctattaaaattGttttgtctgtctttctccca	5	7	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27891686	A	A	27891686	1	1	95	0	1	0	0	0	0	0	0	0	14767	1392	48	4		4	SLC4A1AP	2	27891686	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3629865	27891686	215307687	140	94882											
DPY30	84661	broad.mit.edu	37	chr2	32264286	32264286	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccacctagtaaaagcagatCccaagttttctccagcttgc	7	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32264286	T	T	32264286	1	4	95	0	1	0	0	0	0	0	0	0	4784	870	30	4		4	DPY30	2	32264286	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4372600	32264286	210935087	141	94883											
BIRC6	57448	broad.mit.edu	37	chr2	32640830	32640830	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaatgttagtggtggatAtttagtgctttataaaatga	12	1	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32640830	G	G	32640830	3	3	95	1	0	0	0	0	1	0	0	0	1444	449	16	5	2509	5	BIRC6	2	32640830	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	376544	32640830	210558543	142	94884											
HEATR5B	54497	broad.mit.edu	37	chr2	37255774	37255774	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatatctatatgtatatatCagaagtaaaacaatttccat	3	5	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37255774	A	A	37255774	1	1	95	0	1	0	0	0	0	0	0	0	7099	841	29	3		3	HEATR5B	2	37255774	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4614944	37255774	205943599	143	94885											
PRKD3	23683	broad.mit.edu	37	chr2	37513418	37513418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaacagcaaatgtgtgtGgaactttcactctgcacatt	9	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37513418	T	T	37513418	3	4	95	1	0	0	0	0	1	0	0	0	12626	1348	47	2	1916	2	PRKD3	2	37513418	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	257644	37513418	205685955	144	94886											
SLC8A1	6546	broad.mit.edu	37	chr2	40392221	40392221	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaaggaggaaggaagcccTaatgacctactaaagccccc	10	13	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40392221	C	C	40392221	1	2	95	0	1	0	0	0	0	0	0	0	14820	1537	53	5		5	SLC8A1	2	40392221	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	2878803	40392221	202807152	145	94887											
SLC8A1	6546	broad.mit.edu	37	chr2	40402050	40402050	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataacaaataccagtgacatCagactgcctgacaacccacc	5	14	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40402050	G	G	40402050	1	3	95	0	1	0	0	0	0	0	0	0	14820	841	29	4		4	SLC8A1	2	40402050	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	9829	40402050	202797323	146	94888											
ABCG5	64240	broad.mit.edu	37	chr2	44051683	44051683	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctcatcccatcaagataAaatttgtggttaatgcccac	5	11	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44051683	T	T	44051683	1	4	95	0	1	0	0	0	0	0	0	0	71	29	1	5		5	ABCG5	2	44051683	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	3649633	44051683	199147690	147	94889											
ABCG5	64240	broad.mit.edu	37	chr2	44053560	44053560	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggtgaatggtgagaacCacaattcggttcctgcgagc	14	9	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44053560	A	A	44053560	2	1	95	1	0	0	0	0	0	0	0	1	71	581	21	2		2	ABCG5	2	44053560	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	1877	44053560	199145813	148	94890											
PPM1B	5495	broad.mit.edu	37	chr2	44428593	44428593	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcactactaacgaagacttTagggcagctggaaaatcagg	10	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44428593	C	C	44428593	2	2	95	1	0	0	0	0	0	0	0	1	12437	1751	61	5		5	PPM1B	2	44428593	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	375033	44428593	198770780	149	94891											
PREPL	9581	broad.mit.edu	37	chr2	44556018	44556018	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctgatatatattgttattCttgacatctctcacaatggt	5	9	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44556018	A	A	44556018	1	1	95	0	1	0	0	0	0	0	0	0	12581	928	32	3		3	PREPL	2	44556018	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	127425	44556018	198643355	150	94892											
PLEK	5341	broad.mit.edu	37	chr2	68607461	68607461	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttttggttgtcattacaggGgagcgtgttcaatacgtgga	13	6	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68607461	C	C	68607461	3	2	95	1	0	0	0	0	1	0	0	0	12148	1246	43	4	50	4	PLEK	2	68607461	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	24051443	68607461	174591912	151	94893											
APLF	200558	broad.mit.edu	37	chr2	68794563	68794563	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaaatgaaacctttaaaTgattttcctattaaacctag	3	7	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68794563	C	C	68794563	1	2	95	0	1	0	0	0	0	0	0	0	778	1479	51	5		5	APLF	2	68794563	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	187102	68794563	174404810	152	94894											
ADD2	119	broad.mit.edu	37	chr2	70904843	70904843	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttgtgggacctgagacCccccagtgtgggagaagaaa	14	9	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70904843	T	T	70904843	1	4	95	0	1	0	0	0	0	0	0	0	305	638	22	4		4	ADD2	2	70904843	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2110280	70904843	172294530	153	94895											
CLEC4F	165530	broad.mit.edu	37	chr2	71043795	71043796	+	Missense_Mutation	DNP	CC	AG	AG													actgctattggctaactgagCctgggtatttgccgtttcca							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	71043796	AG	AG	71043795	3	1	95	1	0	0	0	0	1	0	0	0	3548	739	26	3	1067	3	CLEC4F	2	71043795	Missense_Mutation	DNP	CC	TCGA-35-5375-01A-01D-1625-08	138952	71043795	172155578	154	94896											
ZNF638	27332	broad.mit.edu	37	chr2	71590292	71590292	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaaataggtatcctgaTtggaatcctgagatcctccc	7	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71590292	C	C	71590292	2	2	95	1	0	0	0	0	0	0	0	1	18182	1490	52	5		5	ZNF638	2	71590292	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	546497	71590292	171609081	155	94897											
DYSF	8291	broad.mit.edu	37	chr2	71741006	71741006	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaaagaaagcgaagtgcGcctacatctagaaagctgct	9	9	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71741006	T	T	71741006	2	4	95	1	0	0	0	0	0	0	0	1	4899	1074	38	3		3	DYSF	2	71741006	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	150714	71741006	171458367	156	94898											
CYP26B1	56603	broad.mit.edu	37	chr2	72360229	72360229	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcatgacctccttgatgaCgcagtccaggtagcgcagcc	12	14	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72360229	T	T	72360229	3	4	95	1	0	0	0	0	1	0	0	0	4189	536	19	4	477	4	CYP26B1	2	72360229	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	619223	72360229	170839144	157	94899											
SLC4A5	57835	broad.mit.edu	37	chr2	74491340	74491340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcttcttggtttggtggcGgtgcctcctcaggaggacgt	17	9	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74491340	A	A	74491340	3	1	95	1	0	0	0	0	1	0	0	0	14771	1116	39	4	2852	4	SLC4A5	2	74491340	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2131111	74491340	168708033	158	94900											
SEMA4F	10505	broad.mit.edu	37	chr2	74902162	74902162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcccagacctggagaGgtgagggggcagatcttcat	14	12	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74902162	T	T	74902162	3	4	95	1	0	0	0	0	1	0	0	0	14148	1014	35	2	1183	2	SEMA4F	2	74902162	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	410822	74902162	168297211	159	94901											
REG1B	5968	broad.mit.edu	37	chr2	79313628	79313628	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattcatgttctggcaataGagctgttggagaagaaaatg	12	4	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79313628	T	T	79313628	2	4	95	1	0	0	0	0	0	0	0	1	13319	929	33	3		3	REG1B	2	79313628	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	4411466	79313628	163885745	160	94902											
REG1B	5968	broad.mit.edu	37	chr2	79313955	79313955	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatctgcatcaacccaggTctcagggtcttcattaaagt	7	12	5	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79313955	A	A	79313955	3	1	95	1	0	0	0	0	1	0	0	0	13319	1667	58	5	350	5	REG1B	2	79313955	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	327	79313955	163885418	161	94903											
REG3A	5068	broad.mit.edu	37	chr2	79385629	79385629	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgagagggagcctgagacCtgctgagggagggcagggca	19	7	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385629	T	T	79385629	1	4	95	0	1	0	0	0	0	0	0	0	13320	696	24	4		4	REG3A	2	79385629	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	71674	79385629	163813744	162	94904											
RMND5A	64795	broad.mit.edu	37	chr2	87113623	87113623	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttggttgttctttatcttTaacaattttaagagctccgt	7	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87113623	G	G	87113623	1	3	95	0	1	0	0	0	0	0	0	0	13508	1769	61	5		5	RMND5A	2	87113623	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	7727994	87113623	156085750	163	94905											
C2orf51	200523	broad.mit.edu	37	chr2	88828634	88828634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatccctaaccccaaccCcaagctaacagatgggtacc	6	18	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88828634	A	A	88828634	3	1	95	1	0	0	0	0	1	0	0	0	2195	623	22	2	195	2	C2orf51	2	88828634	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1715011	88828634	154370739	164	94906											
SNRNP200	23020	broad.mit.edu	37	chr2	96943347	96943347	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtatgagtccttggacCacatggcttgggtgaccatc	12	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96943347	T	T	96943347	4	4	95	1	0	0	0	0	0	1	0	0	14966	595	21	4	569	4	SNRNP200	2	96943347	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	8114713	96943347	146256026	165	94907											
CNGA3	1261	broad.mit.edu	37	chr2	99008487	99008487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccccacgggagtgttccGggagacccagcatggtggat	16	12	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99008487	T	T	99008487	1	4	95	0	1	0	0	0	0	0	0	0	3630	1131	39	1		1	CNGA3	2	99008487	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2065140	99008487	144190886	166	94908											
C2orf55	343990	broad.mit.edu	37	chr2	99443402	99443402	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggggtgccaagcctgccTggcctgcctctgtgtggaga	17	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99443402	C	C	99443402	1	2	95	0	1	0	0	0	0	0	0	0	2198	1595	55	5		5	C2orf55	2	99443402	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	434915	99443402	143755971	167	94909											
RGPD4	285190	broad.mit.edu	37	chr2	108487374	108487383	+	Frame_Shift_Del	DEL	TTTGCAGATG	-	-													aaacaagtagcacttttacaTttgcagatgttgcaaaatca							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108487383	-	-	108487374	7	5	95	1	0	1	0	1	0	0	0	0	13396	1493	52	0	2992	0	RGPD4	2	108487374	Frame_Shift_Del	DEL	TTTGCAGATG	TCGA-35-5375-01A-01D-1625-08	9043972	108487374	134711999	168	94910											
ACTR3	10096	broad.mit.edu	37	chr2	114670907	114670907	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaatcctaaaagatttaGtccttttaaaaacatgattt	4	6	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114670907	C	C	114670907	1	2	95	0	1	0	0	0	0	0	0	0	212	1044	36	4		4	ACTR3	2	114670907	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	6183533	114670907	128528466	169	94911											
MARCO	8685	broad.mit.edu	37	chr2	119739909	119739909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccttatgctctctgtgGtgtctgttgtccaggacttc	10	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119739909	T	T	119739909	1	4	95	0	1	0	0	0	0	0	0	0	9403	1276	44	3		3	MARCO	2	119739909	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	5069002	119739909	123459464	170	94912											
EPB41L5	57669	broad.mit.edu	37	chr2	120850798	120850798	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatgtaagatgaaactaatGaggtgttatcttttttcttc	7	5	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120850798	A	A	120850798	1	1	95	0	1	0	0	0	0	0	0	0	5199	1305	45	4		4	EPB41L5	2	120850798	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1110889	120850798	122348575	171	94913											
GLI2	2736	broad.mit.edu	37	chr2	121712731	121712731	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgcatttctctctgcctTtttttttttttttttttttt	4	6	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121712731	C	C	121712731	1	2	95	0	1	0	0	0	0	0	0	0	6502	1856	64	5		5	GLI2	2	121712731	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	861933	121712731	121486642	172	94914											
CNTNAP5	129684	broad.mit.edu	37	chr2	125281892	125281892	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttgcaggcagcaacttgaAtgatggcctgtggcactcgg	13	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125281892	T	T	125281892	3	4	95	1	0	0	0	0	1	0	0	0	3682	101	4	5	1371	5	CNTNAP5	2	125281892	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	3569161	125281892	117917481	173	94915											
CYP27C1	339761	broad.mit.edu	37	chr2	127960838	127960838	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggtgacatgcatgtatgtCccagacttagcacactgcct	10	11	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127960838	G	G	127960838	1	3	95	0	1	0	0	0	0	0	0	0	4193	870	30	4		4	CYP27C1	2	127960838	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2678946	127960838	115238535	174	94916											
UGGT1	56886	broad.mit.edu	37	chr2	128855128	128855128	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttttccactccattgttgTtagaagccaggtaagagaac	10	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128855128	G	G	128855128	3	3	95	1	0	0	0	0	1	0	0	0	17067	1722	60	5	190	5	UGGT1	2	128855128	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	894290	128855128	114344245	175	94917											
PTPN18	26469	broad.mit.edu	37	chr2	131116683	131116683	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgctcagcagcccacaaGggcaccttggtgggatctct	11	14	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131116683	A	A	131116683	1	1	95	0	1	0	0	0	0	0	0	0	12890	1015	35	4		4	PTPN18	2	131116683	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2261555	131116683	112082690	176	94918											
PLEKHB2	55041	broad.mit.edu	37	chr2	131949186	131949186	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacgggtgggctataggttgGcaggccagaattacttctct	13	9	1	1	rs13002136		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131949186	C	C	131949186	1	2	95	0	1	0	0	0	0	0	0	0	12160	1218	42	4		4	PLEKHB2	2	131949186	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	832503	131949186	111250187	177	94919											
PLEKHB2	55041	broad.mit.edu	37	chr2	131951756	131951756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgacacttcatccaccCcacactgggtatctgcttcc	6	17	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131951756	A	A	131951756	1	1	95	0	1	0	0	0	0	0	0	0	12160	638	22	2		2	PLEKHB2	2	131951756	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2570	131951756	111247617	178	94920											
TUBA3D	113457	broad.mit.edu	37	chr2	132235885	132235885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggacgactccttcaacaCgttcttcagtgagactggag	12	11	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132235885	A	A	132235885	3	1	95	1	0	0	0	0	1	0	0	0	16873	536	19	3	158	3	TUBA3D	2	132235885	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	284129	132235885	110963488	179	94921											
TUBA3D	113457	broad.mit.edu	37	chr2	132238318	132238318	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggattggtgcccgactggatTtaaggtatgactgggtgatg	16	5	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132238318	A	A	132238318	3	1	95	1	0	0	0	0	1	0	0	0	16873	1841	64	5	1066	5	TUBA3D	2	132238318	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2433	132238318	110961055	180	94922											
LCT	3938	broad.mit.edu	37	chr2	136569740	136569740	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaagagagttagggagCtgacgtgaaggactccccac	15	8	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136569740	T	T	136569740	1	4	95	0	1	0	0	0	0	0	0	0	8765	812	28	4		4	LCT	2	136569740	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4331422	136569740	106629633	181	94923											
LRP1B	53353	broad.mit.edu	37	chr2	141032006	141032006	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttacttgcaaaatatatCttcactgtctttatttataa	2	8	3	0	rs150457308	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141032006	A	A	141032006	3	1	95	1	0	0	0	0	1	0	0	0	9042	913	32	3	698	3	LRP1B	2	141032006	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	4462266	141032006	102167367	182	94924											
LRP1B	53353	broad.mit.edu	37	chr2	141108485	141108485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgataatatacatccatccCtgttattcttgaattatgtt	4	7	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141108485	A	A	141108485	3	1	95	1	0	0	0	0	1	0	0	0	9042	681	24	2	2086	2	LRP1B	2	141108485	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	76479	141108485	102090888	183	94925											
LRP1B	53353	broad.mit.edu	37	chr2	141201814	141201814	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatttatctacatcataTgaatttatgaagtatagtac	4	5	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141201814	A	A	141201814	1	1	95	0	1	0	0	0	0	0	0	0	9042	1479	51	5		5	LRP1B	2	141201814	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	93329	141201814	101997559	184	94926											
LRP1B	53353	broad.mit.edu	37	chr2	141294231	141294231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtagtcaatgcactcacCatttccacattcaaactccg	5	14	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141294231	A	A	141294231	3	1	95	1	0	0	0	0	1	0	0	0	9042	594	21	2	6422	2	LRP1B	2	141294231	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	92417	141294231	101905142	185	94927											
LRP1B	53353	broad.mit.edu	37	chr2	141707803	141707803	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaatttataaaattactaaCcttctttagtacaattgatc	2	6	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141707803	T	T	141707803	5	4	95	1	0	0	0	0	0	0	1	0	9042	521	18	4	10950	4	LRP1B	2	141707803	Splice_Site	SNP	C	TCGA-35-5375-01A-01D-1625-08	413572	141707803	101491570	186	94928											
KCNJ3	3760	broad.mit.edu	37	chr2	155566053	155566053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatgtaaattactgttgGgctgccttgaaattttcagt	9	5	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155566053	T	T	155566053	1	4	95	0	1	0	0	0	0	0	0	0	8122	1247	43	2		2	KCNJ3	2	155566053	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	13858250	155566053	87633320	187	94929											
NR4A2	4929	broad.mit.edu	37	chr2	157184934	157184934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttctttgaccatcccaaCagccaggcacttctgaaatc	5	15	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157184934	A	A	157184934	3	1	95	1	0	0	0	0	1	0	0	0	10728	478	17	3	840	3	NR4A2	2	157184934	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1618881	157184934	86014439	188	94930											
TANC1	85461	broad.mit.edu	37	chr2	159913269	159913269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagtgtagcacaagatgGcattgctctgggtgaccttg	13	9	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159913269	T	T	159913269	1	4	95	0	1	0	0	0	0	0	0	0	15663	1218	42	3		3	TANC1	2	159913269	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2728335	159913269	83286104	189	94931											
DPP4	1803	broad.mit.edu	37	chr2	162862233	162862233	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tataaataggttataaaataGgtataggtcctcatctctta	6	5	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162862233	C	C	162862233	1	2	95	0	1	0	0	0	0	0	0	0	4769	1015	35	4		4	DPP4	2	162862233	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2948964	162862233	80337140	190	94932											
FAP	2191	broad.mit.edu	37	chr2	163066582	163066582	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtaatctggacatttggaAacagttaagctgcctgatca	9	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163066582	G	G	163066582	1	3	95	0	1	0	0	0	0	0	0	0	5730	29	1	5		5	FAP	2	163066582	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	204349	163066582	80132791	191	94933											
FAP	2191	broad.mit.edu	37	chr2	163075642	163075642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaatgttatttgaaaagGtggatctcctggtctttgtt	9	4	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163075642	T	T	163075642	3	4	95	1	0	0	0	0	1	0	0	0	5730	1261	44	3	1820	3	FAP	2	163075642	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	9060	163075642	80123731	192	94934											
KCNH7	90134	broad.mit.edu	37	chr2	163361085	163361085	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattcagagtgagctgtggAatcttgttaatggtgctgta	12	4	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163361085	T	T	163361085	2	4	95	1	0	0	0	0	0	0	0	1	8107	242	9	5		5	KCNH7	2	163361085	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	285443	163361085	79838288	193	94935											
SCN3A	6328	broad.mit.edu	37	chr2	165984655	165984655	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctattttaatattgaaatatGcatttaaataacagcctaaa	3	5	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165984655	A	A	165984655	1	1	95	0	1	0	0	0	0	0	0	0	14031	1334	46	4		4	SCN3A	2	165984655	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2623570	165984655	77214718	194	94936											
SCN1A	6323	broad.mit.edu	37	chr2	166866437	166866437	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacaacaagtataatttttGcttataattattcagaggat	5	4	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166866437	T	T	166866437	1	4	95	0	1	0	0	0	0	0	0	0	14027	1334	46	3		3	SCN1A	2	166866437	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	881782	166866437	76332936	195	94937											
SCN9A	6335	broad.mit.edu	37	chr2	167145088	167145088	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatcaagtttattagataAaaggagcccaggaaaatcac	9	6	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167145088	G	G	167145088	2	3	95	1	0	0	0	0	0	0	0	1	14038	11	1	5		5	SCN9A	2	167145088	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	278651	167145088	76054285	196	94938											
CHRNA1	1134	broad.mit.edu	37	chr2	175622695	175622695	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattctgcagatgagaaaaCaaaggaactcccaaagtcac	7	10	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175622695	T	T	175622695	2	4	95	1	0	0	0	0	0	0	0	1	3412	477	17	4		4	CHRNA1	2	175622695	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	8477607	175622695	67576678	197	94939											
CHN1	1123	broad.mit.edu	37	chr2	175742647	175742647	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactggcatatgttttttgTatgctggctctctgtttaag	11	6	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175742647	C	C	175742647	3	2	95	1	0	0	0	0	1	0	0	0	3393	1638	57	5	941	5	CHN1	2	175742647	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	119952	175742647	67456726	198	94940											
TTN	7273	broad.mit.edu	37	chr2	179423169	179423169	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagtattcagaattctctCtcagaccggaaacaacgtga	7	9	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179423169	T	T	179423169	3	4	95	1	0	0	0	0	1	0	0	0	16861	913	32	4	21106	4	TTN	2	179423169	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3680522	179423169	63776204	199	94941											
TTN	7273	broad.mit.edu	37	chr2	179504759	179504759	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatatgctgttgacattgaGgataagcttgctcacctgct	10	8	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179504759	A	A	179504759	1	1	95	0	1	0	0	0	0	0	0	0	16861	1015	35	4		4	TTN	2	179504759	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	81590	179504759	63694614	200	94942											
TTN	7273	broad.mit.edu	37	chr2	179542825	179542825	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagttagttttgtcttttaCcatggctctgttacagatta	7	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179542825	T	T	179542825	1	4	95	0	1	0	0	0	0	0	0	0	16861	522	18	4		4	TTN	2	179542825	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	38066	179542825	63656548	201	94943											
TTN	7273	broad.mit.edu	37	chr2	179553067	179553067	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttaggacatagcttcaTggtacttcctcactataaga	7	10	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179553067	C	C	179553067	1	2	95	0	1	0	0	0	0	0	0	0	16861	1479	51	5		5	TTN	2	179553067	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	10242	179553067	63646306	202	94944											
TTN	7273	broad.mit.edu	37	chr2	179553472	179553472	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcagcaacaaatctcTtttcttctacaacagttttc	2	11	5	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179553472	C	C	179553472	3	2	95	1	0	0	0	0	1	0	0	0	16861	1609	56	5	72348	5	TTN	2	179553472	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	405	179553472	63645901	203	94945											
TTN	7273	broad.mit.edu	37	chr2	179579124	179579124	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcttgaaaactgtaaggTtgcaatgttttctgaataag	8	6	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179579124	C	C	179579124	3	2	95	1	0	0	0	0	1	0	0	0	16861	1725	60	5	78240	5	TTN	2	179579124	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	25652	179579124	63620249	204	94946											
PPP1R1C	151242	broad.mit.edu	37	chr2	182825954	182825954	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtcttagaactttggtgtCattggtctcagacaccactt	8	9	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182825954	A	A	182825954	1	1	95	0	1	0	0	0	0	0	0	0	12470	841	29	3		3	PPP1R1C	2	182825954	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3246830	182825954	60373419	205	94947											
DNAH7	56171	broad.mit.edu	37	chr2	196698983	196698983	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgacatagtcaggttcaCtaagtttaatcacataaaga	6	8	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196698983	G	G	196698983	3	3	95	1	0	0	0	0	1	0	0	0	4646	565	20	4	3099	4	DNAH7	2	196698983	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	13873029	196698983	46500390	206	94948											
DNAH7	56171	broad.mit.edu	37	chr2	196859376	196859376	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtatctgtaggctctctatTgagtaaagtgcttcaagtct	9	7	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196859376	A	A	196859376	1	1	95	0	1	0	0	0	0	0	0	0	4646	1827	63	5		5	DNAH7	2	196859376	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	160393	196859376	46339997	207	94949											
PGAP1	80055	broad.mit.edu	37	chr2	197708759	197708759	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtattgaggagtctttatgaTgattggatttcttttcactt	9	4	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197708759	C	C	197708759	3	2	95	1	0	0	0	0	1	0	0	0	11872	1464	51	5	402	5	PGAP1	2	197708759	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	849383	197708759	45490614	208	94950											
BZW1	9689	broad.mit.edu	37	chr2	201683039	201683039	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcagaatatgttcggaatCagcaaaccatcggagctcgt	9	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201683039	T	T	201683039	4	4	95	1	0	0	0	0	0	1	0	0	1588	827	29	4	768	4	BZW1	2	201683039	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3974280	201683039	41516334	209	94951											
ALS2	57679	broad.mit.edu	37	chr2	202582933	202582933	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttggcatagtcagtgttcCctaggtaaagtcagagaata	10	6	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202582933	A	A	202582933	4	1	95	1	0	0	0	0	0	1	0	0	550	637	22	2	1314	2	ALS2	2	202582933	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	899894	202582933	40616440	210	94952											
PARD3B	117583	broad.mit.edu	37	chr2	206036920	206036920	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttgaatattgttttccTttcttctgccttaggatggt	8	7	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206036920	G	G	206036920	1	3	95	0	1	0	0	0	0	0	0	0	11538	1624	56	5		5	PARD3B	2	206036920	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	3453987	206036920	37162453	211	94953											
CPS1	1373	broad.mit.edu	37	chr2	211502682	211502683	+	Intron	DNP	CA	AG	AG													ggagtggaattaagaagtgaCaatactcatccggttgatgc					rs149494458	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	211502683	AG	AG	211502682	1	1	95	0	1	0	0	0	0	0	0	0	3855	493	17	3		3	CPS1	2	211502682	Intron	DNP	CA	TCGA-35-5375-01A-01D-1625-08	5465762	211502682	31696691	212	94954											
CPS1	1373	broad.mit.edu	37	chr2	211503846	211503846	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attataataacattcttattTgtttattttatttgttttct	2	3	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211503846	A	A	211503846	1	1	95	0	1	0	0	0	0	0	0	0	3855	1827	63	5		5	CPS1	2	211503846	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1164	211503846	31695527	213	94955											
ERBB4	2066	broad.mit.edu	37	chr2	212426882	212426882	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttagagttacttggattgTactaatggtgctgatgattt	10	3	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212426882	A	A	212426882	1	1	95	0	1	0	0	0	0	0	0	0	5251	1653	57	5		5	ERBB4	2	212426882	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	923036	212426882	30772491	214	94956											
ERBB4	2066	broad.mit.edu	37	chr2	212587266	212587266	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattcatgcaggcctgcaaCacagcaaatattactttcat	5	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212587266	T	T	212587266	1	4	95	0	1	0	0	0	0	0	0	0	5251	493	17	4		4	ERBB4	2	212587266	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	160384	212587266	30612107	215	94957											
ZNF142	7701	broad.mit.edu	37	chr2	219507623	219507623	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgtctggtggtcgaaaagtCacagaaggggcactgatggg	16	8	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219507623	G	G	219507623	3	3	95	1	0	0	0	0	1	0	0	0	17857	826	29	4	1459	4	ZNF142	2	219507623	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	6920357	219507623	23691750	216	94958											
ABCB6	10058	broad.mit.edu	37	chr2	220075879	220075879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgagatacccccaaggcCtgggaggcagggtgggctgg	17	9	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220075879	A	A	220075879	1	1	95	0	1	0	0	0	0	0	0	0	45	696	24	2		2	ABCB6	2	220075879	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	568256	220075879	23123494	217	94959											
DOCK10	55619	broad.mit.edu	37	chr2	225635348	225635348	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagctcgtgcataggccatTggcccagcattaacctgttg	10	11	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225635348	A	A	225635348	2	1	95	1	0	0	0	0	0	0	0	1	4725	1799	63	5		5	DOCK10	2	225635348	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	5559469	225635348	17564025	218	94960											
COL4A4	1286	broad.mit.edu	37	chr2	227924926	227924926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgaaccactcagcccaGgggcaccttggggacctgga	12	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227924926	T	T	227924926	3	4	95	1	0	0	0	0	1	0	0	0	3725	1000	35	2	3070	2	COL4A4	2	227924926	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2289578	227924926	15274447	219	94961											
TM4SF20	79853	broad.mit.edu	37	chr2	228235653	228235653	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttctgttgttgcagcacGctctttttcttgctgtcaag	9	10	4	0	rs138005777		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228235653	A	A	228235653	3	1	95	1	0	0	0	0	1	0	0	0	16092	1087	38	4	474	4	TM4SF20	2	228235653	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	310727	228235653	14963720	220	94962											
PID1	55022	broad.mit.edu	37	chr2	229890308	229890308	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatctattcccttgaactcCgtgaccaatgctgcctttgc	6	14	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229890308	A	A	229890308	1	1	95	0	1	0	0	0	0	0	0	0	11977	667	23	1		1	PID1	2	229890308	3'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	1654655	229890308	13309065	221	94963											
SP140	11262	broad.mit.edu	37	chr2	231159056	231159056	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattattacatagctttataCagcttcttgtcacataactg	5	8	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231159056	T	T	231159056	1	4	95	0	1	0	0	0	0	0	0	0	15076	493	17	4		4	SP140	2	231159056	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1268748	231159056	12040317	222	94964											
ALPI	248	broad.mit.edu	37	chr2	233320856	233320856	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacccaggcagcctgcgCtgcagccggttcctggtgtc	12	14	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233320856	T	T	233320856	1	4	95	0	1	0	0	0	0	0	0	0	543	812	28	4		4	ALPI	2	233320856	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	2161800	233320856	9878517	223	94965											
KIF1A	547	broad.mit.edu	37	chr2	241697805	241697805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccggaaccaggggaagcGgtcatagaaggggtctccgc	16	11	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241697805	T	T	241697805	3	4	95	1	0	0	0	0	1	0	0	0	8353	1116	39	1	2637	1	KIF1A	2	241697805	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	8376949	241697805	1501568	224	94966											
CNTN4	152330	broad.mit.edu	37	chr3	3097913	3097913	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagtttatgacaaaagttAtctgaaggacttgctgttta	8	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3097913	T	T	3097913	1	4	95	0	1	0	0	0	0	0	0	0	3675	464	16	5		5	CNTN4	3	3097913	3'UTR	SNP	A	TCGA-35-5375-01A-01D-1625-08		3097913	194924517	225	94967											
CAV3	859	broad.mit.edu	37	chr3	8787303	8787303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccaccttcactgtctccaAgtactggtgctaccgtctgt	7	15	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8787303	T	T	8787303	3	4	95	1	0	0	0	0	1	0	0	0	2721	72	3	5	212	5	CAV3	3	8787303	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	5689390	8787303	189235127	226	94968											
C3orf24	115795	broad.mit.edu	37	chr3	10146346	10146346	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggacggtgtgtgtgggaagCagggggaggccttgaatggg	22	5	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10146346	G	G	10146346	3	3	95	1	0	0	0	0	1	0	0	0	2239	710	25	4	424	4	C3orf24	3	10146346	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1359043	10146346	187876084	227	94969											
PLCL2	23228	broad.mit.edu	37	chr3	17051999	17051999	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccttgaaattattcacaaAtatgaaccatccaaagaggg	7	8	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17051999	G	G	17051999	2	3	95	1	0	0	0	0	0	0	0	1	12135	98	4	5		5	PLCL2	3	17051999	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	6905653	17051999	180970431	228	94970											
SCN11A	11280	broad.mit.edu	37	chr3	38908896	38908896	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagccaaagatgataaagacTacgaagtaaatgtaaccgag	10	6	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38908896	A	A	38908896	2	1	95	1	0	0	0	0	0	0	0	1	14026	1509	53	5		5	SCN11A	3	38908896	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	21856897	38908896	159113534	229	94971											
TTC21A	199223	broad.mit.edu	37	chr3	39167012	39167012	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggagtacttgctcttcTgccccaagcaggttagggga	12	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39167012	C	C	39167012	3	2	95	1	0	0	0	0	1	0	0	0	16813	1580	55	5	1447	5	TTC21A	3	39167012	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	258116	39167012	158855418	230	94972											
PTPN23	25930	broad.mit.edu	37	chr3	47448253	47448253	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagcgggtgagctacagcGaggaggggactggggaccaa	21	7	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47448253	T	T	47448253	1	4	95	0	1	0	0	0	0	0	0	0	12896	1073	37	3		3	PTPN23	3	47448253	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	8281241	47448253	150574177	231	94973											
NCKIPSD	51517	broad.mit.edu	37	chr3	48719696	48719696	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactatggctctgggccgcaTcactcctgagtggacccctt	11	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48719696	A	A	48719696	1	1	95	0	1	0	0	0	0	0	0	0	10320	1450	50	5		5	NCKIPSD	3	48719696	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1271443	48719696	149302734	232	94974											
USP4	7375	broad.mit.edu	37	chr3	49321528	49321528	+	Frame_Shift_Del	DEL	T	-	-													gcaaggaccataggtcaaacTtttttgtggcctgttgatgc					rs138821848	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49321528	-	-	49321528	7	5	95	1	0	1	0	1	0	0	0	0	17198	1609	56	0	475	0	USP4	3	49321528	Frame_Shift_Del	DEL	T	TCGA-35-5375-01A-01D-1625-08	601832	49321528	148700902	233	94975											
PRKCD	5580	broad.mit.edu	37	chr3	53218869	53218869	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagctctgagactgacagcCccgcttctccctcaccccag	8	18	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53218869	T	T	53218869	1	4	95	0	1	0	0	0	0	0	0	0	12615	638	22	4		4	PRKCD	3	53218869	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3897341	53218869	144803561	234	94976											
PTPRG	5793	broad.mit.edu	37	chr3	62153637	62153637	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccctcccctctctggtcctCtgttcagcttgaggcttttt	7	16	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62153637	G	G	62153637	1	3	95	0	1	0	0	0	0	0	0	0	12910	928	32	4		4	PTPRG	3	62153637	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	8934768	62153637	135868793	235	94977											
ADAMTS9	56999	broad.mit.edu	37	chr3	64640393	64640393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaacagtacacactttggGgtgggggttaaaaaaagcaa	11	7	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64640393	A	A	64640393	1	1	95	0	1	0	0	0	0	0	0	0	273	1247	43	4		4	ADAMTS9	3	64640393	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2486756	64640393	133382037	236	94978											
EPHA3	2042	broad.mit.edu	37	chr3	89499322	89499322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaaactttgcttctcaCacaggtaattaaagctgtag	7	9	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89499322	A	A	89499322	1	1	95	0	1	0	0	0	0	0	0	0	5210	493	17	3		3	EPHA3	3	89499322	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	24858929	89499322	108523108	237	94979											
EPHA6	285220	broad.mit.edu	37	chr3	97439280	97439281	+	Intron	DNP	CC	AT	AT													tgctaccgatagttaaactgCcattttgtgaatgtaaacac							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	97439281	AT	AT	97439280	1	1	95	0	1	0	0	0	0	0	0	0	5213	754	26	3		3	EPHA6	3	97439280	Intron	DNP	CC	TCGA-35-5375-01A-01D-1625-08	7939958	97439280	100583150	238	94980											
IMPG2	50939	broad.mit.edu	37	chr3	100961440	100961440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtactcttttttcctgcaagTattggattcaccttaatgca	6	9	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100961440	C	C	100961440	1	2	95	0	1	0	0	0	0	0	0	0	7799	1653	57	5		5	IMPG2	3	100961440	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	3522160	100961440	97060990	239	94981											
ALCAM	214	broad.mit.edu	37	chr3	105252423	105252423	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgattgaaccaaggtaaTaacattgcctttttattttg	6	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105252423	G	G	105252423	1	3	95	0	1	0	0	0	0	0	0	0	487	1421	49	5		5	ALCAM	3	105252423	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	4290983	105252423	92770007	240	94982											
BBX	56987	broad.mit.edu	37	chr3	107491504	107491504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcagaagggatgaaaatGgaagaatcaaagctaataaa	10	4	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107491504	T	T	107491504	3	4	95	1	0	0	0	0	1	0	0	0	1348	1348	47	2	966	2	BBX	3	107491504	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2239081	107491504	90530926	241	94983											
KIAA1524	57650	broad.mit.edu	37	chr3	108285524	108285524	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atacaacaaaaaaattctcaCtttatgtgtaaaagataaca	3	6	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108285524	G	G	108285524	1	3	95	0	1	0	0	0	0	0	0	0	8309	580	20	4		4	KIAA1524	3	108285524	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	794020	108285524	89736906	242	94984											
DZIP3	9666	broad.mit.edu	37	chr3	108355508	108355508	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggatgtacaggtgacAtggtaaggatgctgcaatgt	15	4	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108355508	C	C	108355508	3	2	95	1	0	0	0	0	1	0	0	0	4905	217	8	5	1002	5	DZIP3	3	108355508	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	69984	108355508	89666922	243	94985											
SLC9A10	285335	broad.mit.edu	37	chr3	111927123	111927123	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taactgggatatccaagagaTtataaagggaaatatattca	8	4	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111927123	A	A	111927123	3	1	95	1	0	0	0	0	1	0	0	0	14824	1493	52	5	1701	5	SLC9A10	3	111927123	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	3571615	111927123	86095307	244	94986											
CCDC80	151887	broad.mit.edu	37	chr3	112356904	112356904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtttgccttcaaaggaccCcagcaggtcggccactgact	10	14	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112356904	A	A	112356904	3	1	95	1	0	0	0	0	1	0	0	0	2882	623	22	2	1031	2	CCDC80	3	112356904	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	429781	112356904	85665526	245	94987											
GSK3B	2932	broad.mit.edu	37	chr3	119666044	119666044	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaactgtctatgagcggTggggagattaatttctagaa	12	5	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119666044	C	C	119666044	1	2	95	0	1	0	0	0	0	0	0	0	6890	1711	59	5		5	GSK3B	3	119666044	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	7309140	119666044	78356386	246	94988											
SEC22A	26984	broad.mit.edu	37	chr3	122928165	122928165	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaggaatgcaggagtgcaGaaagtattttaaaatgcttt	10	5	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122928165	C	C	122928165	3	2	95	1	0	0	0	0	1	0	0	0	14101	942	33	4	103	4	SEC22A	3	122928165	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	3262121	122928165	75094265	247	94989											
ADCY5	111	broad.mit.edu	37	chr3	123003553	123003553	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagctggtacgtgttggCagccagcacctggtacatgt	12	12	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123003553	T	T	123003553	3	4	95	1	0	0	0	0	1	0	0	0	297	710	25	4	101	4	ADCY5	3	123003553	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	75388	123003553	75018877	248	94990											
ROPN1	54763	broad.mit.edu	37	chr3	123699399	123699399	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgattcatacgatgagagcAatcctggacaggaggtcacc	11	10	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123699399	T	T	123699399	1	4	95	0	1	0	0	0	0	0	0	0	13634	145	5	5		5	ROPN1	3	123699399	5'UTR	SNP	A	TCGA-35-5375-01A-01D-1625-08	695846	123699399	74323031	249	94991											
CCDC37	348807	broad.mit.edu	37	chr3	126142149	126142149	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggtcccagagtcccgaCcctgccatctcttcgcaggt	11	16	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126142149	A	A	126142149	1	1	95	0	1	0	0	0	0	0	0	0	2836	522	18	3		3	CCDC37	3	126142149	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2442750	126142149	71880281	250	94992											
IFT122	55764	broad.mit.edu	37	chr3	129185898	129185898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggacgacagtcccagGgacgacaacttgtgagtgtg	15	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129185898	T	T	129185898	3	4	95	1	0	0	0	0	1	0	0	0	7625	1223	43	2	916	2	IFT122	3	129185898	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	3043749	129185898	68836532	251	94993											
IFT122	55764	broad.mit.edu	37	chr3	129221462	129221462	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatgggccatggcatagtAtcaacactggggaccacaga	11	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129221462	G	G	129221462	1	3	95	0	1	0	0	0	0	0	0	0	7625	464	16	5		5	IFT122	3	129221462	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	35564	129221462	68800968	252	94994											
NEK11	79858	broad.mit.edu	37	chr3	130992400	130992400	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtgatggccaggaccaAgatgaaacgcatgagggagt	15	7	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130992400	T	T	130992400	3	4	95	1	0	0	0	0	1	0	0	0	10418	72	3	5	1776	5	NEK11	3	130992400	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1770938	130992400	67030030	253	94995											
DNAJC13	23317	broad.mit.edu	37	chr3	132169588	132169588	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaattaatcctgcaaccaAcagagtactctgttcctatg	5	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132169588	C	C	132169588	3	2	95	1	0	0	0	0	1	0	0	0	4672	43	2	5	452	5	DNAJC13	3	132169588	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1177188	132169588	65852842	254	94996											
STAG1	10274	broad.mit.edu	37	chr3	136240070	136240070	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaccagccagggtacttgTatgcctaaaagctctgacct	8	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136240070	C	C	136240070	3	2	95	1	0	0	0	0	1	0	0	0	15360	1638	57	5	3227	5	STAG1	3	136240070	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	4070482	136240070	61782360	255	94997											
CLSTN2	64084	broad.mit.edu	37	chr3	140282871	140282871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtttgtcgtggccatgGgtgtgtaccgggtccggatc	16	8	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140282871	T	T	140282871	3	4	95	1	0	0	0	0	1	0	0	0	3594	1232	43	2	2613	2	CLSTN2	3	140282871	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	4042801	140282871	57739559	256	94998											
GK5	256356	broad.mit.edu	37	chr3	141905162	141905162	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttacatatatcaaacctCtaaacatatatcaaaacatc	0	9	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141905162	G	G	141905162	1	3	95	0	1	0	0	0	0	0	0	0	6486	928	32	4		4	GK5	3	141905162	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1622291	141905162	56117268	257	94999											
XRN1	54464	broad.mit.edu	37	chr3	142089540	142089540	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataaaagacataaaacttaTataactaataattagtcact	2	5	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142089540	C	C	142089540	1	2	95	0	1	0	0	0	0	0	0	0	17586	1421	49	5		5	XRN1	3	142089540	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	184378	142089540	55932890	258	95000											
ZIC1	7545	broad.mit.edu	37	chr3	147131424	147131424	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactgaaagaaccctgcgaaTcaaaacaacccccacacaga	5	14	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147131424	A	A	147131424	1	1	95	0	1	0	0	0	0	0	0	0	17804	1450	50	5		5	ZIC1	3	147131424	3'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	5041884	147131424	50891006	259	95001											
CPA3	1359	broad.mit.edu	37	chr3	148596353	148596353	+	Intron	DEL	T	-	-													acagtaaaaaatgcctgtacTtttttttaagttacccttaa					rs75696101	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	148596353	-	-	148596353	6	5	95	0	1	1	0	1	0	0	0	0	3823	1624	56	0		0	CPA3	3	148596353	Intron	DEL	T	TCGA-35-5375-01A-01D-1625-08	1464929	148596353	49426077	260	95002											
MED12L	116931	broad.mit.edu	37	chr3	151105632	151105633	+	Missense_Mutation	DNP	CG	TT	TT													tacgaagcagaaggtgtcccCgtgggacttgtttgagggtc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	151105633	TT	TT	151105632	3	4	95	1	0	0	0	0	1	0	0	0	9522	652	23	4	5156	4	MED12L	3	151105632	Missense_Mutation	DNP	CG	TCGA-35-5375-01A-01D-1625-08	2509279	151105632	46916798	261	95003											
VEPH1	79674	broad.mit.edu	37	chr3	157213148	157213148	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttgatgcatggtgaggatGagtttgatcagttgactttc	13	4	1	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157213148	C	C	157213148	1	2	95	0	1	0	0	0	0	0	0	0	17281	1305	45	4		4	VEPH1	3	157213148	5'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	6107516	157213148	40809282	262	95004											
SI	6476	broad.mit.edu	37	chr3	164760714	164760714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtataggacttgagagaGggacttctaacaatgtctta	10	5	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164760714	T	T	164760714	1	4	95	0	1	0	0	0	0	0	0	0	14410	1015	35	2		2	SI	3	164760714	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	7547566	164760714	33261716	263	95005											
SLITRK3	22865	broad.mit.edu	37	chr3	164906953	164906953	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attctcattgaggtctatctGgacaatggcattcaagtgtt	9	7	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164906953	A	A	164906953	4	1	95	1	0	0	0	0	0	1	0	0	14858	1357	47	4	1271	4	SLITRK3	3	164906953	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	146239	164906953	33115477	264	95006											
GOLIM4	27333	broad.mit.edu	37	chr3	167745467	167745467	+	Intron	DEL	C	-	-													gcaagttttcaactctctttCccaccttatgagtttacatg							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167745467	-	-	167745467	6	5	95	0	1	1	0	1	0	0	0	0	6630	870	30	0		0	GOLIM4	3	167745467	Intron	DEL	C	TCGA-35-5375-01A-01D-1625-08	2838514	167745467	30276963	265	95007											
SAMD7	344658	broad.mit.edu	37	chr3	169644740	169644740	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaagacccagacattgaAgcacccagcaaccagaagtc	8	13	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169644740	T	T	169644740	3	4	95	1	0	0	0	0	1	0	0	0	13935	69	3	5	704	5	SAMD7	3	169644740	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1899273	169644740	28377690	266	95008											
NLGN1	22871	broad.mit.edu	37	chr3	173993119	173993119	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggtttcttgagtacaGgcgatcaggctgcaaagggg	14	7	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173993119	A	A	173993119	3	1	95	1	0	0	0	0	1	0	0	0	10556	1000	35	4	671	4	NLGN1	3	173993119	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	4348379	173993119	24029311	267	95009											
MCCC1	56922	broad.mit.edu	37	chr3	182789019	182789019	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcctcctccaccccggacGgctttaatcatgacaggata	7	14	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182789019	A	A	182789019	2	1	95	1	0	0	0	0	0	0	0	1	9467	1103	39	4		4	MCCC1	3	182789019	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	8795900	182789019	15233411	268	95010											
LAMP3	27074	broad.mit.edu	37	chr3	182858522	182858522	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttggtactgggtcataatTgtgtatgaaaattccaaaaa	8	5	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182858522	C	C	182858522	1	2	95	0	1	0	0	0	0	0	0	0	8691	1827	63	5		5	LAMP3	3	182858522	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	69503	182858522	15163908	269	95011											
ECE2	9718	broad.mit.edu	37	chr3	183994570	183994570	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggcctcattgcccccgGgcccagagttaaccctgtgg	13	15	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183994570	A	A	183994570	1	1	95	0	1	0	0	0	0	0	0	0	4930	1247	43	4		4	ECE2	3	183994570	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1136048	183994570	14027860	270	95012											
EIF4G1	1981	broad.mit.edu	37	chr3	184042135	184042135	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatggatgaagctgctacGgtgagagaaaacccactatc	12	8	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184042135	A	A	184042135	2	1	95	1	0	0	0	0	0	0	0	1	5078	1130	39	4		4	EIF4G1	3	184042135	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	47565	184042135	13980295	271	95013											
CLCN2	1181	broad.mit.edu	37	chr3	184075392	184075392	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtggggctggactgaccTaggagccctgcctacctcca	13	13	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184075392	A	A	184075392	1	1	95	0	1	0	0	0	0	0	0	0	3494	1537	53	5		5	CLCN2	3	184075392	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	33257	184075392	13947038	272	95014											
VPS8	23355	broad.mit.edu	37	chr3	184584877	184584877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccctttgtggttaggtaGgcatgatttttagttaatta	9	4	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184584877	T	T	184584877	1	4	95	0	1	0	0	0	0	0	0	0	17345	1015	35	2		2	VPS8	3	184584877	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	509485	184584877	13437553	273	95015											
KNG1	3827	broad.mit.edu	37	chr3	186440338	186440338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttatcctctggcactgccCtggtgggaaattaaccattt	9	10	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186440338	A	A	186440338	1	1	95	0	1	0	0	0	0	0	0	0	8498	696	24	2		2	KNG1	3	186440338	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1855461	186440338	11582092	274	95016											
OSTN	344901	broad.mit.edu	37	chr3	190930341	190930341	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgctggactggagattggCaagtgcacatttcatcctgg	13	8	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190930341	G	G	190930341	3	3	95	1	0	0	0	0	1	0	0	0	11393	710	25	4	22	4	OSTN	3	190930341	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	4490003	190930341	7092089	275	95017											
CCDC50	152137	broad.mit.edu	37	chr3	191076003	191076003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaaggagactacttctGttcctctgattccttctact	9	10	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191076003	T	T	191076003	1	4	95	0	1	0	0	0	0	0	0	0	2848	1392	48	3		3	CCDC50	3	191076003	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	145662	191076003	6946427	276	95018											
ATP13A5	344905	broad.mit.edu	37	chr3	193023452	193023452	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcctgcatgagccgctttCaaagcctggaatgataagcc	10	11	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193023452	G	G	193023452	3	3	95	1	0	0	0	0	1	0	0	0	1131	825	29	4	1112	4	ATP13A5	3	193023452	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1947449	193023452	4998978	277	95019											
LMLN	89782	broad.mit.edu	37	chr3	197687369	197687369	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcacccagaaggagcaGgcgtaggagatagtgactgg	15	7	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197687369	T	T	197687369	1	4	95	0	1	0	0	0	0	0	0	0	8921	1015	35	2		2	LMLN	3	197687369	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	4663917	197687369	335061	278	95020											
ZNF595	152687	broad.mit.edu	37	chr4	53432	53432	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctggggaggcctcgtcgGaaccggcgggaaatggcggc	20	10	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53432	T	T	53432	1	4	95	0	1	0	0	0	0	0	0	0	18152	1189	41	3		3	ZNF595	4	53432	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08		53432	191100844	279	95021											
POLN	353497	broad.mit.edu	37	chr4	2129883	2129883	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacatcatctctttcagattCctggaataacttcagaagtt	5	9	4	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2129883	G	G	2129883	3	3	95	1	0	0	0	0	1	0	0	0	12302	864	30	4	795	4	POLN	4	2129883	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2076451	2129883	189024393	280	95022											
STX18	53407	broad.mit.edu	37	chr4	4425353	4425353	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacatattaactattagcaCttggtaatctaacaggactg	6	7	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4425353	G	G	4425353	1	3	95	0	1	0	0	0	0	0	0	0	15459	580	20	4		4	STX18	4	4425353	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2295470	4425353	186728923	281	95023											
WDR1	9948	broad.mit.edu	37	chr4	10099383	10099383	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtccctcaaagaatgccgcGcagttatcatcgcttcccgt	9	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10099383	A	A	10099383	2	1	95	1	0	0	0	0	0	0	0	1	17399	1079	38	4		4	WDR1	4	10099383	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	5674030	10099383	181054893	282	95024											
STIM2	57620	broad.mit.edu	37	chr4	27010119	27010119	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcacacagctcctccctaGatgaggtagaccacaaaatt	7	12	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27010119	T	T	27010119	3	4	95	1	0	0	0	0	1	0	0	0	15402	942	33	3	1281	3	STIM2	4	27010119	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	16910736	27010119	164144157	283	95025											
GABRA4	2557	broad.mit.edu	37	chr4	46976423	46976423	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacagaatgtggttagagtCaatgctcctttttcatccac	8	10	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46976423	A	A	46976423	1	1	95	0	1	0	0	0	0	0	0	0	6223	841	29	3		3	GABRA4	4	46976423	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	19966304	46976423	144177853	284	95026											
CWH43	80157	broad.mit.edu	37	chr4	49052588	49052588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttaagttaattccagttGtgatatacagagtagagtta	8	3	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49052588	T	T	49052588	1	4	95	0	1	0	0	0	0	0	0	0	4106	1392	48	3		3	CWH43	4	49052588	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2076165	49052588	142101688	285	95027											
EPHA5	2044	broad.mit.edu	37	chr4	66467388	66467388	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccatttttctcttcatatCctgccttgcacatgcatttc	4	13	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66467388	G	G	66467388	3	3	95	1	0	0	0	0	1	0	0	0	5212	855	30	4	2296	4	EPHA5	4	66467388	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	17414800	66467388	124686888	286	95028											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69097043	69097043	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccctccagggagcttttTccattcacaattttgttgcc	7	14	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69097043	G	G	69097043	2	3	95	1	0	0	0	0	0	0	0	1	16363	1770	62	5		5	TMPRSS11B	4	69097043	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	2629655	69097043	122057233	287	95029											
MUC7	4589	broad.mit.edu	37	chr4	71347098	71347098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctccaccagagaccacaGctgccccacccacacctcct	5	22	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71347098	T	T	71347098	3	4	95	1	0	0	0	0	1	0	0	0	10075	971	34	3	643	3	MUC7	4	71347098	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2250055	71347098	119807178	288	95030											
AGPAT9	84803	broad.mit.edu	37	chr4	84519731	84519731	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaacaaatacaaatgaTtatgagatggtattaaaaac	5	3	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84519731	C	C	84519731	1	2	95	0	1	0	0	0	0	0	0	0	392	1508	52	5		5	AGPAT9	4	84519731	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	13172633	84519731	106634545	289	95031											
FAM190A	401145	broad.mit.edu	37	chr4	91701554	91701554	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaaaatgctgagttggtaGaatataaggactgttattta	10	3	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91701554	T	T	91701554	1	4	95	0	1	0	0	0	0	0	0	0	5568	957	33	3		3	FAM190A	4	91701554	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	7181823	91701554	99452722	290	95032											
NPNT	255743	broad.mit.edu	37	chr4	106861809	106861809	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtgtgagtagcacttgtCtctcagctttaaattctagc	9	8	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106861809	T	T	106861809	1	4	95	0	1	0	0	0	0	0	0	0	10685	928	32	4		4	NPNT	4	106861809	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	15160255	106861809	84292467	291	95033											
LEF1	51176	broad.mit.edu	37	chr4	109002741	109002741	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtttccacctccacctaCctggacatggaagtgtcgac	8	15	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109002741	A	A	109002741	5	1	95	1	0	0	0	0	0	0	1	0	8786	521	18	3	584	3	LEF1	4	109002741	Splice_Site	SNP	C	TCGA-35-5375-01A-01D-1625-08	2140932	109002741	82151535	292	95034											
LRIT3	345193	broad.mit.edu	37	chr4	110790750	110790750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcagttggcatggtgGcttgaattttctttttgttc	9	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110790750	T	T	110790750	1	4	95	0	1	0	0	0	0	0	0	0	9036	1218	42	3		3	LRIT3	4	110790750	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1788009	110790750	80363526	293	95035											
ENPEP	2028	broad.mit.edu	37	chr4	111469522	111469522	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttatgaaagtaaatgttTagccattagtagaataggat	8	3	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111469522	A	A	111469522	1	1	95	0	1	0	0	0	0	0	0	0	5170	1769	61	5		5	ENPEP	4	111469522	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	678772	111469522	79684754	294	95036											
NDST3	9348	broad.mit.edu	37	chr4	119036144	119036144	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactttgttgcattgaagTagtgtacactgattggagaa	10	6	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119036144	C	C	119036144	1	2	95	0	1	0	0	0	0	0	0	0	10352	1653	57	5		5	NDST3	4	119036144	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	7566622	119036144	72118132	295	95037											
CCNA2	890	broad.mit.edu	37	chr4	122738877	122738880	+	Intron	DEL	CACT	-	-													aaaaaagcatttttagtaaaCactcactgggtaaaggagat							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122738880	-	-	122738877	6	5	95	0	1	1	0	1	0	0	0	0	2940	493	17	0		0	CCNA2	4	122738877	Intron	DEL	CACT	TCGA-35-5375-01A-01D-1625-08	3702733	122738877	68415399	296	95038											
GYPA	2993	broad.mit.edu	37	chr4	144918644	144918644	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaggaataaaccctcctaGagctgttcacactggtattt	8	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144918644	A	A	144918644	1	1	95	0	1	0	0	0	0	0	0	0	6973	957	33	4		4	GYPA	4	144918644	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	22179767	144918644	46235632	297	95039											
MAP9	79884	broad.mit.edu	37	chr4	156289877	156289877	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcttctagtccatccttcTcctccatgtgacttttcttt	3	13	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156289877	C	C	156289877	3	2	95	1	0	0	0	0	1	0	0	0	9362	1551	54	5	1414	5	MAP9	4	156289877	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	11371233	156289877	34864399	298	95040											
NEIL3	55247	broad.mit.edu	37	chr4	178274978	178274978	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctaggctacagtgcagtGgtgtgatctcagctcactgc	11	12	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178274978	A	A	178274978	1	1	95	0	1	0	0	0	0	0	0	0	10415	1363	47	4		4	NEIL3	4	178274978	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	21985101	178274978	12879298	299	95041											
WWC2	80014	broad.mit.edu	37	chr4	184233492	184233492	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttttattcccttttccAggctgaacagtccaaagaag	6	10	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184233492	T	T	184233492	5	4	95	1	0	0	0	0	0	0	1	0	17539	202	7	5	3469	5	WWC2	4	184233492	Splice_Site	SNP	A	TCGA-35-5375-01A-01D-1625-08	5958514	184233492	6920784	300	95042											
TUBB4Q	56604	broad.mit.edu	37	chr4	190904504	190904505	+	Missense_Mutation	DNP	GG	AT	AT													atgtgtttataatcctgtctGggtactcctcccagatctta							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	190904505	AT	AT	190904504	3	1	95	1	0	0	0	0	1	0	0	0	16885	1348	47	4	828	4	TUBB4Q	4	190904504	Missense_Mutation	DNP	GG	TCGA-35-5375-01A-01D-1625-08	6671012	190904504	249772	301	95043											
SLC9A3	6550	broad.mit.edu	37	chr5	479956	479956	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcggctctgctacctcagCcacgtagctgatggcatcct	10	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	479956	T	T	479956	3	4	95	1	0	0	0	0	1	0	0	0	14827	739	26	4	894	4	SLC9A3	5	479956	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08		479956	180435304	302	95044											
ADAMTS16	170690	broad.mit.edu	37	chr5	5306811	5306811	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgcgggaccctcgagGggcagctggtttgcctcacc	15	14	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5306811	A	A	5306811	2	1	95	1	0	0	0	0	0	0	0	1	261	1223	43	4		4	ADAMTS16	5	5306811	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	4826855	5306811	175608449	303	95045											
KIAA0947	23379	broad.mit.edu	37	chr5	5473822	5473822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccattgatctgctctgctGccatcagaaatggatctgga	10	10	4	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5473822	T	T	5473822	3	4	95	1	0	0	0	0	1	0	0	0	8272	1319	46	3	6436	3	KIAA0947	5	5473822	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	167011	5473822	175441438	304	95046											
ADCY2	108	broad.mit.edu	37	chr5	7784384	7784384	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgatgtagacaggcactaGagaatctgatatttgttgat	10	4	1	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7784384	T	T	7784384	1	4	95	0	1	0	0	0	0	0	0	0	294	957	33	3		3	ADCY2	5	7784384	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2310562	7784384	173130876	305	95047											
MTRR	4552	broad.mit.edu	37	chr5	7869242	7869242	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctattggtcctgggtacCgagcatgggcgctgcgtcag	14	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7869242	G	G	7869242	1	3	95	0	1	0	0	0	0	0	0	0	10055	667	23	4		4	MTRR	5	7869242	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	84858	7869242	173046018	306	95048											
CTNND2	1501	broad.mit.edu	37	chr5	11732322	11732322	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgttggaggtgtttaagcCggggctcagggaactcgtct	15	10	2	0	rs151129181	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11732322	T	T	11732322	3	4	95	1	0	0	0	0	1	0	0	0	4054	652	23	4	3661	4	CTNND2	5	11732322	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3863080	11732322	169182938	307	95049											
DNAH5	1767	broad.mit.edu	37	chr5	13716890	13716890	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatgtattcactttcaacAtcattcagtcagtcactctt	3	13	7	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13716890	G	G	13716890	1	3	95	0	1	0	0	0	0	0	0	0	4644	232	8	5		5	DNAH5	5	13716890	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1984568	13716890	167198370	308	95050											
DNAH5	1767	broad.mit.edu	37	chr5	13830206	13830206	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaaagataaaagacttttTgtgctcctttttacatgtca	6	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13830206	A	A	13830206	4	1	95	1	0	0	0	0	0	1	0	0	4644	1821	63	5	7868	5	DNAH5	5	13830206	Nonsense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	113316	13830206	167085054	309	95051											
CDH18	1016	broad.mit.edu	37	chr5	19473547	19473547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtctaggtctgcttctgCcagtctttgcttaataaatt	9	8	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19473547	A	A	19473547	3	1	95	1	0	0	0	0	1	0	0	0	3133	739	26	3	215	3	CDH18	5	19473547	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	5643341	19473547	161441713	310	95052											
CDH18	1016	broad.mit.edu	37	chr5	19571616	19571616	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaacattttaagtgtaatTttattcaagtttaattaatg	4	2	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19571616	G	G	19571616	1	3	95	0	1	0	0	0	0	0	0	0	3133	1856	64	5		5	CDH18	5	19571616	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	98069	19571616	161343644	311	95053											
CDH6	1004	broad.mit.edu	37	chr5	31316316	31316316	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttttggtttgtgacagaTaatccaaagcaaagtagtcg	9	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31316316	G	G	31316316	3	3	95	1	0	0	0	0	1	0	0	0	3144	1420	49	5	1422	5	CDH6	5	31316316	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	11744700	31316316	149598944	312	95054											
C5orf22	55322	broad.mit.edu	37	chr5	31536014	31536014	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatcaggtaatttcctcatAtttgtgaatatggaagtgat	8	5	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31536014	T	T	31536014	1	4	95	0	1	0	0	0	0	0	0	0	2308	464	16	5		5	C5orf22	5	31536014	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	219698	31536014	149379246	313	95055											
MTMR12	54545	broad.mit.edu	37	chr5	32235040	32235040	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaagaagcctctttaaTacacaggttcctaagaggga	11	7	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32235040	C	C	32235040	1	2	95	0	1	0	0	0	0	0	0	0	10035	1421	49	5		5	MTMR12	5	32235040	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	699026	32235040	148680220	314	95056											
TARS	6897	broad.mit.edu	37	chr5	33457241	33457241	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttttgaggatagaaaacAgccaactttgtgctgcagaa	9	7	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33457241	C	C	33457241	1	2	95	0	1	0	0	0	0	0	0	0	15678	203	7	5		5	TARS	5	33457241	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1222201	33457241	147458019	315	95057											
TARS	6897	broad.mit.edu	37	chr5	33457373	33457373	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttttcagaattcctccacGtactgggaaggcaaagcaga	10	9	1	2	rs113811412		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33457373	C	C	33457373	2	2	95	1	0	0	0	0	0	0	0	1	15678	1132	40	4		4	TARS	5	33457373	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	132	33457373	147457887	316	95058											
ADAMTS12	81792	broad.mit.edu	37	chr5	33588881	33588881	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccccgtggggcccgcatgtCgccgagcatgcttcccactc	11	18	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33588881	T	T	33588881	2	4	95	1	0	0	0	0	0	0	0	1	257	871	31	4		4	ADAMTS12	5	33588881	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	131508	33588881	147326379	317	95059											
ADAMTS12	81792	broad.mit.edu	37	chr5	33616207	33616207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacacaatcatgaaagaGgcacgccagcttctcagctg	10	11	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33616207	T	T	33616207	1	4	95	0	1	0	0	0	0	0	0	0	257	1015	35	2		2	ADAMTS12	5	33616207	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	27326	33616207	147299053	318	95060											
ADAMTS12	81792	broad.mit.edu	37	chr5	33662249	33662249	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccaagtgagatgaattcaGggtgggtgcatcagacattt	13	6	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33662249	C	C	33662249	1	2	95	0	1	0	0	0	0	0	0	0	257	1015	35	4		4	ADAMTS12	5	33662249	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	46042	33662249	147253011	319	95061											
SPEF2	79925	broad.mit.edu	37	chr5	35807185	35807185	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaaccattttttttaacatCtactggattgtgaggttgat	7	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35807185	G	G	35807185	1	3	95	0	1	0	0	0	0	0	0	0	15153	928	32	4		4	SPEF2	5	35807185	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2144936	35807185	145108075	320	95062											
UGT3A1	133688	broad.mit.edu	37	chr5	35991280	35991280	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtcaggattttggcagcCtctgagagcaggaccccaga	12	10	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35991280	G	G	35991280	3	3	95	1	0	0	0	0	1	0	0	0	17089	680	24	4	1618	4	UGT3A1	5	35991280	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	184095	35991280	144923980	321	95063											
UGT3A1	133688	broad.mit.edu	37	chr5	35991414	35991414	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggctaaggactctgtgcgCgcctcagtactccaaaggca	12	13	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35991414	T	T	35991414	1	4	95	0	1	0	0	0	0	0	0	0	17089	783	27	4		4	UGT3A1	5	35991414	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	134	35991414	144923846	322	95064											
LMBRD2	92255	broad.mit.edu	37	chr5	36142595	36142596	+	Intron	INS	-	C	C													tatatattttttttaaaaaaINSggaaataccttggaacaggg							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36142596	C	C	36142595	6	5	95	0	1	1	1	0	0	0	0	0	8917	87	3	0		0	LMBRD2	5	36142595	Intron	INS	-	TCGA-35-5375-01A-01D-1625-08	151181	36142595	144772665	323	95065											
C5orf42	65250	broad.mit.edu	37	chr5	37183179	37183179	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccaaaaaatgtggtttgAtgatctctggattagacatt	9	5	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37183179	C	C	37183179	3	2	95	1	0	0	0	0	1	0	0	0	2324	333	12	5	4597	5	C5orf42	5	37183179	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1040584	37183179	143732081	324	95066											
FYB	2533	broad.mit.edu	37	chr5	39153450	39153450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcccacttttgtagacCcagaagtttcccatggaact	8	12	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39153450	A	A	39153450	1	1	95	0	1	0	0	0	0	0	0	0	6184	638	22	2		2	FYB	5	39153450	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1970271	39153450	141761810	325	95067											
FYB	2533	broad.mit.edu	37	chr5	39170373	39170373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgagagctgttgcagcCccttgatcaactcagtttaa	8	11	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39170373	A	A	39170373	1	1	95	0	1	0	0	0	0	0	0	0	6184	638	22	2		2	FYB	5	39170373	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	16923	39170373	141744887	326	95068											
PRKAA1	5562	broad.mit.edu	37	chr5	40764924	40764924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatcatttggtcgactttgaCttctaattcctaaatgccat	5	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40764924	G	G	40764924	3	3	95	1	0	0	0	0	1	0	0	0	12599	565	20	4	453	4	PRKAA1	5	40764924	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1594551	40764924	140150336	327	95069											
MGC42105	167359	broad.mit.edu	37	chr5	43280023	43280023	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttcagagcaactgataCattttttattttgacatttt	5	6	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43280023	A	A	43280023	1	1	95	0	1	0	0	0	0	0	0	0	9645	493	17	3		3	MGC42105	5	43280023	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2515099	43280023	137635237	328	95070											
C5orf28	64417	broad.mit.edu	37	chr5	43453735	43453735	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctaaggaaattaaagatcaGaaaaattaagcctatgcttt	7	5	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43453735	C	C	43453735	1	2	95	0	1	0	0	0	0	0	0	0	2312	957	33	4		4	C5orf28	5	43453735	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	173712	43453735	137461525	329	95071											
GZMA	3001	broad.mit.edu	37	chr5	54401361	54401361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattcaagaccctacatgGtcctacttagtcttgacaga	6	12	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54401361	T	T	54401361	3	4	95	1	0	0	0	0	1	0	0	0	6980	1261	44	3	136	3	GZMA	5	54401361	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	10947626	54401361	126513899	330	95072											
CDC20B	166979	broad.mit.edu	37	chr5	54429227	54429227	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttttaattcccaatctaAatgataacttacagtagtca	3	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54429227	C	C	54429227	1	2	95	0	1	0	0	0	0	0	0	0	3090	29	1	5		5	CDC20B	5	54429227	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	27866	54429227	126486033	331	95073											
IPO11	51194	broad.mit.edu	37	chr5	61790032	61790032	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttcacaacagtttatgtCttttctttatgatgtttatg	6	5	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61790032	G	G	61790032	1	3	95	0	1	0	0	0	0	0	0	0	7863	928	32	4		4	IPO11	5	61790032	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	7360805	61790032	119125228	332	95074											
BDP1	55814	broad.mit.edu	37	chr5	70813227	70813227	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatgtatgaaaatcaaagtCaggtggttcttgtagaaaac	10	4	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70813227	G	G	70813227	3	3	95	1	0	0	0	0	1	0	0	0	1400	827	29	4	5025	4	BDP1	5	70813227	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	9023195	70813227	110102033	333	95075											
F2R	2149	broad.mit.edu	37	chr5	76028843	76028843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgaaaccctgctcgaaGgctactatgcctactacttc	6	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76028843	T	T	76028843	3	4	95	1	0	0	0	0	1	0	0	0	5386	1000	35	2	799	2	F2R	5	76028843	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	5215616	76028843	104886417	334	95076											
PAPD4	167153	broad.mit.edu	37	chr5	78975502	78975502	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtgtagaaggtagttttCtgtttaccatctacgtatca	8	7	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78975502	T	T	78975502	1	4	95	0	1	0	0	0	0	0	0	0	11518	928	32	4		4	PAPD4	5	78975502	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2946659	78975502	101939758	335	95077											
TTC37	9652	broad.mit.edu	37	chr5	94865721	94865721	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagacattccttaaagaaagGctcaaagataaatgcctact	6	8	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94865721	C	C	94865721	1	2	95	0	1	0	0	0	0	0	0	0	16831	1218	42	4		4	TTC37	5	94865721	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	15890219	94865721	86049539	336	95078											
LNPEP	4012	broad.mit.edu	37	chr5	96315308	96315308	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaatgggaaattgtttccAtgggcacagatcaggcttcc	10	9	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96315308	T	T	96315308	2	4	95	1	0	0	0	0	0	0	0	1	8938	204	8	5		5	LNPEP	5	96315308	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	1449587	96315308	84599952	337	95079											
SLCO6A1	133482	broad.mit.edu	37	chr5	101834600	101834600	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgagtgctctcggctgccCgtcctgcctgggccaaccca	11	19	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101834600	A	A	101834600	1	1	95	0	1	0	0	0	0	0	0	0	14846	667	23	1		1	SLCO6A1	5	101834600	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	5519292	101834600	79080660	338	95080											
TSLP	85480	broad.mit.edu	37	chr5	110407453	110407454	+	5'UTR	DNP	GG	TT	TT													gcaacagcatgggtgaataaGggcttcctgtggactggcaa							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	110407454	TT	TT	110407453	1	4	95	0	1	0	0	0	0	0	0	0	16753	1015	35	2		2	TSLP	5	110407453	5'UTR	DNP	GG	TCGA-35-5375-01A-01D-1625-08	8572853	110407453	70507807	339	95081											
WDR36	134430	broad.mit.edu	37	chr5	110428264	110428264	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcggttcagcgcgctcaAgcgccggttctatgtaacaa	13	11	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110428264	T	T	110428264	3	4	95	1	0	0	0	0	1	0	0	0	17417	72	3	5	280	5	WDR36	5	110428264	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	20811	110428264	70486996	340	95082											
TSSK1B	83942	broad.mit.edu	37	chr5	112770281	112770281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctccatgacgatgtagaCcttgccatgtgatgtctcaa	10	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112770281	A	A	112770281	3	1	95	1	0	0	0	0	1	0	0	0	16793	507	18	3	851	3	TSSK1B	5	112770281	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2342017	112770281	68144979	341	95083											
AQPEP	206338	broad.mit.edu	37	chr5	115350132	115350132	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagaatatcactggaaaaActttttgtaactgcgtgttg	8	6	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115350132	C	C	115350132	3	2	95	1	0	0	0	0	1	0	0	0	836	40	2	5	2420	5	AQPEP	5	115350132	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	2579851	115350132	65565128	342	95084											
COMMD10	51397	broad.mit.edu	37	chr5	115553895	115553895	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctctggctttggagaaGcaggtttagcggacaacctt	14	8	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115553895	T	T	115553895	1	4	95	0	1	0	0	0	0	0	0	0	3747	986	34	3		3	COMMD10	5	115553895	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	203763	115553895	65361365	343	95085											
DMXL1	1657	broad.mit.edu	37	chr5	118500870	118500870	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattttgatcaatattttttGattataggtagctaaagcag	7	3	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118500870	A	A	118500870	1	1	95	0	1	0	0	0	0	0	0	0	4634	1305	45	4		4	DMXL1	5	118500870	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2946975	118500870	62414390	344	95086											
FSTL4	23105	broad.mit.edu	37	chr5	132763551	132763551	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgtgagggtttgggtttCtctggggaggtgcacacagg	18	5	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132763551	T	T	132763551	1	4	95	0	1	0	0	0	0	0	0	0	6139	928	32	4		4	FSTL4	5	132763551	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	14262681	132763551	48151709	345	95087											
FAM13B	51306	broad.mit.edu	37	chr5	137323851	137323851	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acataaaaaactagtttactGcctgtgtacagtctttcctc	5	10	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137323851	C	C	137323851	1	2	95	0	1	0	0	0	0	0	0	0	5499	1334	46	4		4	FAM13B	5	137323851	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	4560300	137323851	43591409	346	95088											
CDC25C	995	broad.mit.edu	37	chr5	137626512	137626512	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggagtgggccatggtggCgcacatctgtaatcctagct	14	9	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137626512	G	G	137626512	1	3	95	0	1	0	0	0	0	0	0	0	3094	783	27	4		4	CDC25C	5	137626512	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	302661	137626512	43288748	347	95089											
CXXC5	51523	broad.mit.edu	37	chr5	139060874	139060874	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcctctgccatcagctccGgcaagaagaagcggaaacgc	12	13	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139060874	A	A	139060874	3	1	95	1	0	0	0	0	1	0	0	0	4132	1116	39	4	768	4	CXXC5	5	139060874	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1434362	139060874	41854386	348	95090											
PCDHB14	56122	broad.mit.edu	37	chr5	140603219	140603219	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggctcttttgtggctaatCtagcgagggacctagggctg	14	8	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140603219	G	G	140603219	3	3	95	1	0	0	0	0	1	0	0	0	11633	912	32	4	144	4	PCDHB14	5	140603219	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1542345	140603219	40312041	349	95091											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774305	140774305	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgcgctcaagcagagccTcgtggtggccgtccaggacc	14	13	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140774305	A	A	140774305	3	1	95	1	0	0	0	0	1	0	0	0	11654	1551	54	5	1927	5	PCDHGA8	5	140774305	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	171086	140774305	40140955	350	95092											
HTR4	3360	broad.mit.edu	37	chr5	147863923	147863923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataccttgctaaaatgtctcTgtcaaacagaaaatctgtcc	5	10	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147863923	C	C	147863923	1	2	95	0	1	0	0	0	0	0	0	0	7519	1588	55	5		5	HTR4	5	147863923	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	7089618	147863923	33051337	351	95093											
SLC36A3	285641	broad.mit.edu	37	chr5	150663556	150663556	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctctgctatgacaaccagAacagttccagtgtctctccc	6	15	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150663556	G	G	150663556	1	3	95	0	1	0	0	0	0	0	0	0	14709	261	9	5		5	SLC36A3	5	150663556	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	2799633	150663556	30251704	352	95094											
SLC36A1	206358	broad.mit.edu	37	chr5	150856278	150856278	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacctgcaatttggagctaAtatccaaggcagcataaccc	8	11	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150856278	T	T	150856278	3	4	95	1	0	0	0	0	1	0	0	0	14707	101	4	5	980	5	SLC36A1	5	150856278	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	192722	150856278	30058982	353	95095											
FAT2	2196	broad.mit.edu	37	chr5	150885377	150885378	+	Frame_Shift_Ins	INS	-	G	G													gccgtgtactcattgagacaINSgggggcaaccaggcgctccc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150885378	G	G	150885377	7	5	95	1	0	1	1	0	0	0	0	0	5747	188	7	0	254	0	FAT2	5	150885377	Frame_Shift_Ins	INS	-	TCGA-35-5375-01A-01D-1625-08	29099	150885377	30029883	354	95096											
FAT2	2196	broad.mit.edu	37	chr5	150945342	150945342	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcagccactacaatcaCctgagttcccgaggggctgt	12	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150945342	T	T	150945342	3	4	95	1	0	0	0	0	1	0	0	0	5747	507	18	4	9990	4	FAT2	5	150945342	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	59965	150945342	29969918	355	95097											
GABRA6	2559	broad.mit.edu	37	chr5	161116290	161116290	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgctgactgtcccatgagGctggttaactttcctatgga	10	9	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161116290	A	A	161116290	2	1	95	1	0	0	0	0	0	0	0	1	6225	1194	42	4		4	GABRA6	5	161116290	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	10170948	161116290	19798970	356	95098											
GABRA1	2554	broad.mit.edu	37	chr5	161281319	161281319	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttttagagaataatatgaGatctttactatcacagcctt	6	6	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161281319	A	A	161281319	1	1	95	0	1	0	0	0	0	0	0	0	6220	957	33	4		4	GABRA1	5	161281319	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	165029	161281319	19633941	357	95099											
GNB2L1	10399	broad.mit.edu	37	chr5	180666449	180666449	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaccacctgggagcacacCctgactggtaaagcccctgc	10	15	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180666449	G	G	180666449	1	3	95	0	1	0	0	0	0	0	0	0	6582	638	22	4		4	GNB2L1	5	180666449	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	19385130	180666449	248811	358	95100											
FOXQ1	94234	broad.mit.edu	37	chr6	1313599	1313599	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgcctcagccaccgcgcGccggtccccgcgcccgggct	13	21	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1313599	T	T	1313599	2	4	95	1	0	0	0	0	0	0	0	1	6090	1074	38	3		3	FOXQ1	6	1313599	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08		1313599	169801468	359	95101											
C6orf195	154386	broad.mit.edu	37	chr6	2623651	2623651	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaggatgaaattccttttGagcctggtacagggagagac	13	6	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2623651	C	C	2623651	1	2	95	0	1	0	0	0	0	0	0	0	2373	1305	45	4		4	C6orf195	6	2623651	3'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	1310052	2623651	168491416	360	95102											
GCNT2	2651	broad.mit.edu	37	chr6	10586809	10586809	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctgtggacaagacttccCcctgaaaaccaaccgggaga	9	14	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10586809	T	T	10586809	1	4	95	0	1	0	0	0	0	0	0	0	6363	623	22	4		4	GCNT2	6	10586809	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	7963158	10586809	160528258	361	95103											
NUP153	9972	broad.mit.edu	37	chr6	17688767	17688767	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgttgaacagctgcatAcatcttcattcttgttgaag	8	8	4	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17688767	T	T	17688767	3	4	95	1	0	0	0	0	1	0	0	0	10850	391	14	5	4317	5	NUP153	6	17688767	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	7101958	17688767	153426300	362	95104											
ZNF165	7718	broad.mit.edu	37	chr6	28056916	28056916	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagatgctatgaatgtaatGaatgtgggaaaagctttgca	12	3	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28056916	A	A	28056916	3	1	95	1	0	0	0	0	1	0	0	0	17866	1291	45	4	1136	4	ZNF165	6	28056916	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	10368149	28056916	143058151	363	95105											
PGBD1	84547	broad.mit.edu	37	chr6	28269749	28269749	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgctgtgggcatagaaccAgtcaatgaggtaagctgttg	13	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28269749	T	T	28269749	2	4	95	1	0	0	0	0	0	0	0	1	11875	175	7	5		5	PGBD1	6	28269749	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	212833	28269749	142845318	364	95106											
OR2J2	26707	broad.mit.edu	37	chr6	29141566	29141566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcatcatcctgtcatacGtggactcccatctccacaca	4	16	5	0	rs141015719	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29141566	T	T	29141566	3	4	95	1	0	0	0	0	1	0	0	0	11097	1145	40	3	156	3	OR2J2	6	29141566	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	871817	29141566	141973501	365	95107											
ZFP57	346171	broad.mit.edu	37	chr6	29640292	29640292	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccatttatttatgtttcaaGatgctcactgcctcctttgt	6	10	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29640292	C	C	29640292	3	2	95	1	0	0	0	0	1	0	0	0	17777	932	33	4	18	4	ZFP57	6	29640292	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	498726	29640292	141474775	366	95108											
HLA-G	3135	broad.mit.edu	37	chr6	29858230	29858230	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaggcagcaacagtgccCagggctctgatgtgtctctc	12	13	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29858230	T	T	29858230	1	4	95	0	1	0	0	0	0	0	0	0	7279	609	21	4		4	HLA-G	6	29858230	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	217938	29858230	141256837	367	95109											
HLA-G	3135	broad.mit.edu	37	chr6	29897093	29897093	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggggtttctttgaattggAtgtattgagcatgtgatggg	15	2	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29897093	T	T	29897093	1	4	95	0	1	0	0	0	0	0	0	0	7279	348	12	5		5	HLA-G	6	29897093	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	38863	29897093	141217974	368	95110											
ABCF1	23	broad.mit.edu	37	chr6	30557511	30557511	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggctggtaagttggcattGggatttagggaatgataatc	14	5	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30557511	C	C	30557511	1	2	95	0	1	0	0	0	0	0	0	0	65	1363	47	4		4	ABCF1	6	30557511	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	660418	30557511	140557556	369	95111											
C6orf136	221545	broad.mit.edu	37	chr6	30619352	30619352	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagtgcagtggcgtgatctCagctcactgcagcctctgcc	13	13	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30619352	G	G	30619352	1	3	95	0	1	0	0	0	0	0	0	0	2354	841	29	4		4	C6orf136	6	30619352	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	61841	30619352	140495715	370	95112											
MUC21	394263	broad.mit.edu	37	chr6	30955259	30955259	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggggccaacacagccaCcaactctgggtccagtgtga	12	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30955259	G	G	30955259	3	3	95	1	0	0	0	0	1	0	0	0	10071	507	18	4	1313	4	MUC21	6	30955259	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	335907	30955259	140159808	371	95113											
NEU1	4758	broad.mit.edu	37	chr6	31827407	31827407	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaggaagatggaactgtcTttcaggcgtctccagcagac	11	9	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31827407	A	A	31827407	1	1	95	0	1	0	0	0	0	0	0	0	10436	1624	56	5		5	NEU1	6	31827407	3'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	872148	31827407	139287660	372	95114											
HLA-DOA	3111	broad.mit.edu	37	chr6	32976019	32976019	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactggtagaaggcgggtccGtaggagcccatgtggtcagc	17	9	1	1	rs41556712		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32976019	T	T	32976019	4	4	95	1	0	0	0	0	0	1	0	0	7267	1140	40	3	666	3	HLA-DOA	6	32976019	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1148612	32976019	138139048	373	95115											
COL11A2	1302	broad.mit.edu	37	chr6	33139709	33139709	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcagatgcattctggctgtCcctggacagcctctgcccag	10	14	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33139709	A	A	33139709	1	1	95	0	1	0	0	0	0	0	0	0	3700	870	30	3		3	COL11A2	6	33139709	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	163690	33139709	137975358	374	95116											
COL11A2	1302	broad.mit.edu	37	chr6	33156808	33156809	+	Missense_Mutation	DNP	CC	GA	GA													ggctgagagggaggttgaggCcgcccagtctggtcttcata					rs149638770	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	33156809	GA	GA	33156808	3	3	95	1	0	0	0	0	1	0	0	0	3700	726	26	4	5151	4	COL11A2	6	33156808	Missense_Mutation	DNP	CC	TCGA-35-5375-01A-01D-1625-08	17099	33156808	137958259	375	95117											
DAXX	1616	broad.mit.edu	37	chr6	33286531	33286531	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaggcagctaatcagagtCtgagagcacgatgatctctt	13	8	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33286531	G	G	33286531	3	3	95	1	0	0	0	0	1	0	0	0	4276	913	32	4	14	4	DAXX	6	33286531	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	129723	33286531	137828536	376	95118											
SRPK1	6732	broad.mit.edu	37	chr6	35842080	35842080	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgatgatccacttgagcAgatgatgccccaaaacttca	7	10	1	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35842080	C	C	35842080	3	2	95	1	0	0	0	0	1	0	0	0	15277	188	7	5	1492	5	SRPK1	6	35842080	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	2555549	35842080	135272987	377	95119											
DNAH8	1769	broad.mit.edu	37	chr6	38758183	38758183	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatcaacttttaaagaaggTatgatctatacatttaaaaa	4	5	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38758183	C	C	38758183	5	2	95	1	0	0	0	0	0	0	1	0	4647	1652	57	5	2194	5	DNAH8	6	38758183	Splice_Site	SNP	T	TCGA-35-5375-01A-01D-1625-08	2916103	38758183	132356884	378	95120											
KIF6	221458	broad.mit.edu	37	chr6	39693261	39693261	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taattggtcgcgaccggaagGaggccactacggggcggggc	18	10	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39693261	C	C	39693261	1	2	95	0	1	0	0	0	0	0	0	0	8378	1189	41	4		4	KIF6	6	39693261	5'Flank	SNP	G	TCGA-35-5375-01A-01D-1625-08	935078	39693261	131421806	379	95121											
LRFN2	57497	broad.mit.edu	37	chr6	40399544	40399544	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgacagaccacttgaccaGggccgaggtggtggtcactt	14	11	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40399544	A	A	40399544	2	1	95	1	0	0	0	0	0	0	0	1	9025	991	35	4		4	LRFN2	6	40399544	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	706283	40399544	130715523	380	95122											
PGC	5225	broad.mit.edu	37	chr6	41708341	41708341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgctcccccgctggagcCctgctggctgcaggagagaa	13	15	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41708341	A	A	41708341	3	1	95	1	0	0	0	0	1	0	0	0	11880	623	22	2	527	2	PGC	6	41708341	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1308797	41708341	129406726	381	95123											
PRPH2	5961	broad.mit.edu	37	chr6	42689590	42689590	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgccgcagcatttgaactcGatctgcagcatgtcgatggt	11	10	1	1	rs76989855	byFrequency;by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42689590	T	T	42689590	2	4	95	1	0	0	0	0	0	0	0	1	12683	1048	37	3		3	PRPH2	6	42689590	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	981249	42689590	128425477	382	95124											
TTBK1	84630	broad.mit.edu	37	chr6	43226967	43226967	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaagtctgggaggagaCagatgtcaaccggaacaaac	14	8	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43226967	T	T	43226967	3	4	95	1	0	0	0	0	1	0	0	0	16802	478	17	4	1246	4	TTBK1	6	43226967	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	537377	43226967	127888100	383	95125											
CAPN11	11131	broad.mit.edu	37	chr6	44150872	44150872	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcatcaagctgaacaaCaaggtaatgcaggtcctggt	11	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44150872	G	G	44150872	3	3	95	1	0	0	0	0	1	0	0	0	2650	477	17	4	2116	4	CAPN11	6	44150872	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	923905	44150872	126964195	384	95126											
CDC5L	988	broad.mit.edu	37	chr6	44371573	44371573	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgccctccaaaaaagaagAgaacttcgagcagctggcat	10	11	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44371573	G	G	44371573	2	3	95	1	0	0	0	0	0	0	0	1	3112	301	11	5		5	CDC5L	6	44371573	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	220701	44371573	126743494	385	95127											
PKHD1	5314	broad.mit.edu	37	chr6	51918982	51918982	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctatggacaccaaataagTccttcagttctattagtgca	7	9	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51918982	A	A	51918982	1	1	95	0	1	0	0	0	0	0	0	0	12066	1682	58	5		5	PKHD1	6	51918982	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	7547409	51918982	119196085	386	95128											
FAM83B	222584	broad.mit.edu	37	chr6	54735153	54735153	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagccattgatattctgattGaacacgggttagaagcatac	9	7	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54735153	A	A	54735153	3	1	95	1	0	0	0	0	1	0	0	0	5687	1291	45	4	111	4	FAM83B	6	54735153	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2816171	54735153	116379914	387	95129											
HCRTR2	3062	broad.mit.edu	37	chr6	55147091	55147091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagttcaccatcgccaggagGatcggctcaccaggggacga	14	12	2	0	rs148944500		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55147091	T	T	55147091	3	4	95	1	0	0	0	0	1	0	0	0	7069	1174	41	3	1200	3	HCRTR2	6	55147091	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	411938	55147091	115967976	388	95130											
GFRAL	389400	broad.mit.edu	37	chr6	55198734	55198734	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttggaaaaaaatgtatcaAtaaatcaggtaatattttgt	7	3	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55198734	G	G	55198734	3	3	95	1	0	0	0	0	1	0	0	0	6415	101	4	5	318	5	GFRAL	6	55198734	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	51643	55198734	115916333	389	95131											
PRIM2	5558	broad.mit.edu	37	chr6	57398013	57398013	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacagtaataaagcagcaCtttcttatggtgtttgtttt	7	7	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57398013	G	G	57398013	1	3	95	0	1	0	0	0	0	0	0	0	12597	580	20	4		4	PRIM2	6	57398013	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2199279	57398013	113717054	390	95132											
COL9A1	1297	broad.mit.edu	37	chr6	70935579	70935579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattttattcaattcaggcTgtgtacttgctaccaatttc	5	8	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70935579	A	A	70935579	1	1	95	0	1	0	0	0	0	0	0	0	3739	1595	55	5		5	COL9A1	6	70935579	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	13537566	70935579	100179488	391	95133											
FAM135A	57579	broad.mit.edu	37	chr6	71200705	71200705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaattaaatatctaacattGgaatatttcctctactcttt	2	7	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71200705	T	T	71200705	1	4	95	0	1	0	0	0	0	0	0	0	5494	1363	47	2		2	FAM135A	6	71200705	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	265126	71200705	99914362	392	95134											
COL12A1	1303	broad.mit.edu	37	chr6	75884799	75884799	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggcgtctccagccccagAcgcatacaaggctgtcacag	12	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75884799	T	T	75884799	3	4	95	1	0	0	0	0	1	0	0	0	3701	275	10	5	6742	5	COL12A1	6	75884799	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	4684094	75884799	95230268	393	95135											
TTK	7272	broad.mit.edu	37	chr6	80724274	80724274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaccctgaagaataaaaCggaatcaagtcttctagcta	6	8	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80724274	A	A	80724274	3	1	95	1	0	0	0	0	1	0	0	0	16846	536	19	3	1113	3	TTK	6	80724274	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	4839475	80724274	90390793	394	95136											
TTK	7272	broad.mit.edu	37	chr6	80749412	80749412	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttgtttgtttttttcttaGataagccccaaaagtgatgt	8	5	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80749412	C	C	80749412	5	2	95	1	0	0	0	0	0	0	1	0	16846	956	33	4	2200	4	TTK	6	80749412	Splice_Site	SNP	G	TCGA-35-5375-01A-01D-1625-08	25138	80749412	90365655	395	95137											
SNAP91	9892	broad.mit.edu	37	chr6	84375117	84375117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgctcttcctaaaagcCtccttcctccatcaaaaaaa	2	15	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84375117	A	A	84375117	1	1	95	0	1	0	0	0	0	0	0	0	14947	696	24	2		2	SNAP91	6	84375117	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3625705	84375117	86739950	396	95138											
CYB5R4	51167	broad.mit.edu	37	chr6	84574102	84574102	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcctgaactttccaattatGatgttacataacctcacagt	5	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84574102	C	C	84574102	1	2	95	0	1	0	0	0	0	0	0	0	4162	1305	45	4		4	CYB5R4	6	84574102	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	198985	84574102	86540965	397	95139											
SNX14	57231	broad.mit.edu	37	chr6	86227869	86227869	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatacgaaatagccaagtTaaaactgtaaaagtatttat	5	4	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86227869	G	G	86227869	1	3	95	0	1	0	0	0	0	0	0	0	14999	1769	61	5		5	SNX14	6	86227869	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1653767	86227869	84887198	398	95140											
MDN1	23195	broad.mit.edu	37	chr6	90402561	90402561	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcctgcagtgggctcacGgcatctggatagaaggtgta	15	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90402561	A	A	90402561	2	1	95	1	0	0	0	0	0	0	0	1	9508	1103	39	4		4	MDN1	6	90402561	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	4174692	90402561	80712506	399	95141											
SIM1	6492	broad.mit.edu	37	chr6	100838549	100838549	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggattttgaaatgcgatcCgaattgggactacttatccg	10	8	0	1	rs151274826		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100838549	T	T	100838549	2	4	95	1	0	0	0	0	0	0	0	1	14436	639	23	4		4	SIM1	6	100838549	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	10435988	100838549	70276518	400	95142											
PDSS2	57107	broad.mit.edu	37	chr6	107533454	107533454	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagtctgctccttccaagtCgatattccaatatcatctgt	5	11	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107533454	G	G	107533454	2	3	95	1	0	0	0	0	0	0	0	1	11788	871	31	4		4	PDSS2	6	107533454	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	6694905	107533454	63581613	401	95143											
GPRC6A	222545	broad.mit.edu	37	chr6	117128030	117128030	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatcaaaaacatggaattGcctcagaaataccacaatga	7	8	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117128030	A	A	117128030	4	1	95	1	0	0	0	0	0	1	0	0	6794	1328	46	4	1958	4	GPRC6A	6	117128030	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	9594576	117128030	53987037	402	95144											
PKIB	5570	broad.mit.edu	37	chr6	123039058	123039062	+	Frame_Shift_Del	DEL	ACGGA	-	-													ccagagttcagctgccacagAcggaacctcagatttgcccc					rs148112687		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123039062	-	-	123039058	7	5	95	1	0	1	0	1	0	0	0	0	12069	275	10	0	121	0	PKIB	6	123039058	Frame_Shift_Del	DEL	ACGGA	TCGA-35-5375-01A-01D-1625-08	5911028	123039058	48076009	403	95145											
STX7	8417	broad.mit.edu	37	chr6	132785215	132785215	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacattggcttctatgctatCtgtaaaataaaacacacaca	4	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132785215	A	A	132785215	5	1	95	1	0	0	0	0	0	0	1	0	15468	927	32	3	183	3	STX7	6	132785215	Splice_Site	SNP	C	TCGA-35-5375-01A-01D-1625-08	9746157	132785215	38329852	404	95146											
TAAR5	9038	broad.mit.edu	37	chr6	132909899	132909899	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgccttccgaaaccactgGtaggaaaagacatagatgat	10	8	0	3	rs144431699	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132909899	T	T	132909899	4	4	95	1	0	0	0	0	0	1	0	0	15610	1256	44	3	90	3	TAAR5	6	132909899	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	124684	132909899	38205168	405	95147											
ALDH8A1	64577	broad.mit.edu	37	chr6	135239557	135239557	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaccattagcaaagatcagTgtttaacggtgatggttttg	10	7	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135239557	A	A	135239557	3	1	95	1	0	0	0	0	1	0	0	0	505	1696	59	5	7	5	ALDH8A1	6	135239557	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2329658	135239557	35875510	406	95148											
MYB	4602	broad.mit.edu	37	chr6	135521439	135521439	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgtttagcctcagacaccCtctcatctagtagaagatct	6	13	4	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135521439	T	T	135521439	2	4	95	1	0	0	0	0	0	0	0	1	10101	668	24	4		4	MYB	6	135521439	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	281882	135521439	35593628	407	95149											
PDE7B	27115	broad.mit.edu	37	chr6	136476908	136476908	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatatcaggtaagggagccCaacctggagccagccacagt	11	12	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136476908	T	T	136476908	1	4	95	0	1	0	0	0	0	0	0	0	11746	609	21	4		4	PDE7B	6	136476908	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	955469	136476908	34638159	408	95150											
PEX7	5191	broad.mit.edu	37	chr6	137191109	137191109	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaaccagtgtttgaacttCttggtcatacctatgctatt	7	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137191109	G	G	137191109	3	3	95	1	0	0	0	0	1	0	0	0	11846	913	32	4	741	4	PEX7	6	137191109	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	714201	137191109	33923958	409	95151											
REPS1	85021	broad.mit.edu	37	chr6	139262401	139262402	+	Intron	INS	-	TT	TT													aaggttaacctctatcttgaINStttttctttcagaatcaagc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	139262402	TT	TT	139262401	6	5	95	0	1	1	1	0	0	0	0	0	13336	348	12	0		0	REPS1	6	139262401	Intron	INS	-	TCGA-35-5375-01A-01D-1625-08	2071292	139262401	31852666	410	95152											
UTRN	7402	broad.mit.edu	37	chr6	144999682	144999682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgatatgaaccaaagatgGaatgacttaaaagcaaaatc	8	5	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144999682	T	T	144999682	3	4	95	1	0	0	0	0	1	0	0	0	17230	1183	41	3	7822	3	UTRN	6	144999682	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	5737281	144999682	26115385	411	95153											
UTRN	7402	broad.mit.edu	37	chr6	145051568	145051568	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcccgagttttcttggctGatcagccaattgaggcccct	11	12	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145051568	A	A	145051568	3	1	95	1	0	0	0	0	1	0	0	0	17230	1290	45	4	8095	4	UTRN	6	145051568	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	51886	145051568	26063499	412	95154											
GRM1	2911	broad.mit.edu	37	chr6	146350535	146350535	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttggacgaccattgttgGcgaggggcaccactccggga	15	12	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146350535	T	T	146350535	1	4	95	0	1	0	0	0	0	0	0	0	6862	1218	42	3		3	GRM1	6	146350535	5'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	1298967	146350535	24764532	413	95155											
GRM1	2911	broad.mit.edu	37	chr6	146755937	146755937	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctcttccaccctgtaaggggGaagggtccacatagaaaagc	11	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146755937	C	C	146755937	1	2	95	0	1	0	0	0	0	0	0	0	6862	1189	41	4		4	GRM1	6	146755937	3'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	405402	146755937	24359130	414	95156											
STXBP5	134957	broad.mit.edu	37	chr6	147588262	147588262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagtagttttatgggacCtcaaatcaaagaaagccgac	9	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147588262	A	A	147588262	3	1	95	1	0	0	0	0	1	0	0	0	15474	681	24	2	699	2	STXBP5	6	147588262	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	832325	147588262	23526805	415	95157											
AKAP12	9590	broad.mit.edu	37	chr6	151674269	151674269	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagttacagacacaagctcaCgtgataaaagctgacagcca	9	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151674269	T	T	151674269	2	4	95	1	0	0	0	0	0	0	0	1	448	535	19	4		4	AKAP12	6	151674269	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	4086007	151674269	19440798	416	95158											
ESR1	2099	broad.mit.edu	37	chr6	152419965	152419965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgcccaccgcctacatgCgcccactagccgtggagggg	14	16	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152419965	A	A	152419965	3	1	95	1	0	0	0	0	1	0	0	0	5298	768	27	3	1682	3	ESR1	6	152419965	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	745696	152419965	18695102	417	95159											
SYNE1	23345	broad.mit.edu	37	chr6	152647436	152647436	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacatcctgaaatacctctgCaagagatccacttgggcacc	7	13	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152647436	G	G	152647436	3	3	95	1	0	0	0	0	1	0	0	0	15564	709	25	4	11450	4	SYNE1	6	152647436	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	227471	152647436	18467631	418	95160											
SYNE1	23345	broad.mit.edu	37	chr6	152763126	152763126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcagaggcggtaacaaaGgttcgccttggtgttatgag	13	7	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152763126	T	T	152763126	1	4	95	0	1	0	0	0	0	0	0	0	15564	1015	35	2		2	SYNE1	6	152763126	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	115690	152763126	18351941	419	95161											
OPRM1	4988	broad.mit.edu	37	chr6	154412083	154412083	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcctttaaattcctttcttCtaggttccatagattgtaca	4	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154412083	G	G	154412083	1	3	95	0	1	0	0	0	0	0	0	0	10981	928	32	4		4	OPRM1	6	154412083	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1648957	154412083	16702984	420	95162											
ARID1B	57492	broad.mit.edu	37	chr6	157527237	157527237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatctttaccctcctcGgtcatatctgatgtcatgac	7	12	5	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157527237	T	T	157527237	1	4	95	0	1	0	0	0	0	0	0	0	916	1131	39	1		1	ARID1B	6	157527237	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3115154	157527237	13587830	421	95163											
MAS1	4142	broad.mit.edu	37	chr6	160328457	160328457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtctgtgcccttctgtGggctctttcttgcttggtga	12	9	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160328457	T	T	160328457	3	4	95	1	0	0	0	0	1	0	0	0	9412	1357	47	2	472	2	MAS1	6	160328457	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2801220	160328457	10786610	422	95164											
LPA	4018	broad.mit.edu	37	chr6	160963894	160963894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtccaagttagcaattgtGtcgtttaattcaggacgaat	10	6	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160963894	T	T	160963894	1	4	95	0	1	0	0	0	0	0	0	0	8990	1392	48	3		3	LPA	6	160963894	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	635437	160963894	10151173	423	95165											
PLG	5340	broad.mit.edu	37	chr6	161135923	161135923	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggactctcagagcccacaCgctcatggatacattccttc	8	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161135923	G	G	161135923	3	3	95	1	0	0	0	0	1	0	0	0	12181	535	19	4	671	4	PLG	6	161135923	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	172029	161135923	9979144	424	95166											
PACRG	135138	broad.mit.edu	37	chr6	163235407	163235407	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcttaagtaaataaactgGagtcatttctcagcacatgg	8	8	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163235407	T	T	163235407	1	4	95	0	1	0	0	0	0	0	0	0	11464	1189	41	3		3	PACRG	6	163235407	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2099484	163235407	7879660	425	95167											
QKI	9444	broad.mit.edu	37	chr6	163991561	163991561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgattttaattgtattctGtagatggtgtcaatcagttt	8	4	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163991561	T	T	163991561	1	4	95	0	1	0	0	0	0	0	0	0	12981	1392	48	3		3	QKI	6	163991561	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	756154	163991561	7123506	426	95168											
MLLT4	4301	broad.mit.edu	37	chr6	168315423	168315423	+	Intron	DEL	G	-	-													caacgaccaaaaataggttaGgatgttttctgactgtctcc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	168315423	-	-	168315423	6	5	95	0	1	1	0	1	0	0	0	0	9722	1015	35	0		0	MLLT4	6	168315423	Intron	DEL	G	TCGA-35-5375-01A-01D-1625-08	4323862	168315423	2799644	427	95169											
FRMD1	79981	broad.mit.edu	37	chr6	168461781	168461781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcgagctggagagggaCcagccctgctgatgcaggag	19	9	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168461781	T	T	168461781	1	4	95	0	1	0	0	0	0	0	0	0	6109	522	18	4		4	FRMD1	6	168461781	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	146358	168461781	2653286	428	95170											
THBS2	7058	broad.mit.edu	37	chr6	169621664	169621664	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgagtgccatgggcacccgGagccttaaccacagctctgt	11	13	1	1	rs113861243		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169621664	T	T	169621664	1	4	95	0	1	0	0	0	0	0	0	0	15977	1189	41	3		3	THBS2	6	169621664	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1159883	169621664	1493403	429	95171											
TMEM195	392636	broad.mit.edu	37	chr7	15458244	15458244	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaacagcatatactgaaGggggtatgaagagggccagg	16	5	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15458244	A	A	15458244	3	1	95	1	0	0	0	0	1	0	0	0	16240	1000	35	4	825	4	TMEM195	7	15458244	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08		15458244	143680419	430	95172											
ABCB5	340273	broad.mit.edu	37	chr7	20698332	20698332	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacgtttcttatttccataCtcctggttcattattgtttt	4	8	2	0	rs116410161	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20698332	T	T	20698332	1	4	95	0	1	0	0	0	0	0	0	0	44	580	20	4		4	ABCB5	7	20698332	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5240088	20698332	138440331	431	95173											
VPS41	27072	broad.mit.edu	37	chr7	38766501	38766501	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgataggtgccaagctgcCaactcaccatgctgggcatg	12	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38766501	T	T	38766501	1	4	95	0	1	0	0	0	0	0	0	0	17337	609	21	4		4	VPS41	7	38766501	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	18068169	38766501	120372162	432	95174											
C7orf10	79783	broad.mit.edu	37	chr7	40536007	40536007	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttttgaagtttaacaAcgcctctgttttctgtccag	7	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40536007	T	T	40536007	1	4	95	0	1	0	0	0	0	0	0	0	2401	58	2	5		5	C7orf10	7	40536007	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1769506	40536007	118602656	433	95175											
NUDCD3	23386	broad.mit.edu	37	chr7	44467135	44467135	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagctttgactggcttgggTgaagccgcccacccctaccc	10	16	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44467135	G	G	44467135	1	3	95	0	1	0	0	0	0	0	0	0	10819	1711	59	5		5	NUDCD3	7	44467135	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	3931128	44467135	114671528	434	95176											
PION	54103	broad.mit.edu	37	chr7	77016752	77016752	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggatttcaaccaacaaagtCaagcactttgatcctacaga	6	10	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77016752	G	G	77016752	3	3	95	1	0	0	0	0	1	0	0	0	12029	825	29	4	2287	4	PION	7	77016752	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	32549617	77016752	82121911	435	95177											
PTPN12	5782	broad.mit.edu	37	chr7	77212829	77212829	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtaatgaaatatttttGgtaatcaaaataaatgtgaa	8	1	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77212829	C	C	77212829	1	2	95	0	1	0	0	0	0	0	0	0	12887	1363	47	4		4	PTPN12	7	77212829	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	196077	77212829	81925834	436	95178											
CACNA2D1	781	broad.mit.edu	37	chr7	81626471	81626471	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatctgacctgaggaattgTttagtcttactgattccact	8	9	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81626471	C	C	81626471	1	2	95	0	1	0	0	0	0	0	0	0	2574	1740	60	5		5	CACNA2D1	7	81626471	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	4413642	81626471	77512192	437	95179											
CACNA2D1	781	broad.mit.edu	37	chr7	81689937	81689937	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtatgcactgaccctagatCttttatatattatttaaata	4	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81689937	G	G	81689937	1	3	95	0	1	0	0	0	0	0	0	0	2574	928	32	4		4	CACNA2D1	7	81689937	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	63466	81689937	77448726	438	95180											
PCLO	27445	broad.mit.edu	37	chr7	82585020	82585020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcgttgctgtttgctctctCcttttttgtgactcgggcta	10	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82585020	T	T	82585020	3	4	95	1	0	0	0	0	1	0	0	0	11677	855	30	4	10280	4	PCLO	7	82585020	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	895083	82585020	76553643	439	95181											
ABCB1	5243	broad.mit.edu	37	chr7	87133794	87133794	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatcacatagattaattctCataatagttcttttccctaa	2	8	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87133794	G	G	87133794	1	3	95	0	1	0	0	0	0	0	0	0	40	841	29	4		4	ABCB1	7	87133794	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4548774	87133794	72004869	440	95182											
CDK6	1021	broad.mit.edu	37	chr7	92300683	92300683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctgccactcaaattcaCaaagatccacagtctctttt	4	13	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92300683	A	A	92300683	1	1	95	0	1	0	0	0	0	0	0	0	3178	493	17	3		3	CDK6	7	92300683	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5166889	92300683	66837980	441	95183											
CDK6	1021	broad.mit.edu	37	chr7	92300778	92300779	+	Missense_Mutation	DNP	CC	AG	AG													gcaaatatgcagccaacactCcagagatccacgggggtggc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	92300779	AG	AG	92300778	3	1	95	1	0	0	0	0	1	0	0	0	3178	856	30	3	387	3	CDK6	7	92300778	Missense_Mutation	DNP	CC	TCGA-35-5375-01A-01D-1625-08	95	92300778	66837885	442	95184											
CCDC132	55610	broad.mit.edu	37	chr7	92970683	92970683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaattttgtcaaaatcacGtggtttattactgttagatt	6	5	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92970683	T	T	92970683	1	4	95	0	1	0	0	0	0	0	0	0	2793	1160	40	3		3	CCDC132	7	92970683	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	669905	92970683	66167980	443	95185											
COL1A2	1278	broad.mit.edu	37	chr7	94039086	94039086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctggaccccgcggtattCctggccctgttggtgctgcc	12	16	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94039086	A	A	94039086	3	1	95	1	0	0	0	0	1	0	0	0	3710	855	30	3	1062	3	COL1A2	7	94039086	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1068403	94039086	65099577	444	95186											
ZNF394	84124	broad.mit.edu	37	chr7	99097796	99097796	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaaggaactcatcagccgTcaacaccctccggtcccaaa	6	18	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99097796	A	A	99097796	1	1	95	0	1	0	0	0	0	0	0	0	18007	1682	58	5		5	ZNF394	7	99097796	5'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	5058710	99097796	60040867	445	95187											
GPC2	221914	broad.mit.edu	37	chr7	99769706	99769706	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccacccttctctcccctGtacctgggcggacaccttcg	7	20	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99769706	A	A	99769706	1	1	95	0	1	0	0	0	0	0	0	0	6663	1392	48	4		4	GPC2	7	99769706	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	671910	99769706	59368957	446	95188											
STAG3	10734	broad.mit.edu	37	chr7	99786109	99786109	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagatgttcaagaagatgtCcaactcagagatcatccagc	9	9	3	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99786109	T	T	99786109	3	4	95	1	0	0	0	0	1	0	0	0	15362	855	30	4	485	4	STAG3	7	99786109	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	16403	99786109	59352554	447	95189											
ACTL6B	51412	broad.mit.edu	37	chr7	100252961	100252961	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgcaaggaagactccGcggggagtgggggctgctat	20	8	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100252961	C	C	100252961	1	2	95	0	1	0	0	0	0	0	0	0	199	1102	38	4		4	ACTL6B	7	100252961	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	466852	100252961	58885702	448	95190											
ZAN	7455	broad.mit.edu	37	chr7	100383768	100383768	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgtgtctcagacagtaaGgggagcgaccggggaggttg	17	6	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100383768	A	A	100383768	1	1	95	0	1	0	0	0	0	0	0	0	17640	1015	35	4		4	ZAN	7	100383768	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	130807	100383768	58754895	449	95191											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138433786	138433786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacttattcctctgattccCacagctactaccctagcccc	3	18	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138433786	A	A	138433786	1	1	95	0	1	0	0	0	0	0	0	0	1174	609	21	2		2	ATP6V0A4	7	138433786	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	38050018	138433786	20704877	450	95192											
TBXAS1	6916	broad.mit.edu	37	chr7	139575332	139575332	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttactgaataagtttgaatAattggaattttgcttaatct	6	3	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139575332	G	G	139575332	1	3	95	0	1	0	0	0	0	0	0	0	15786	377	13	5		5	TBXAS1	7	139575332	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1141546	139575332	19563331	451	95193											
RAB19	401409	broad.mit.edu	37	chr7	140125516	140125516	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcgacaagagtgaaaCtccatctcaaaaaaaaaaag	8	9	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140125516	G	G	140125516	1	3	95	0	1	0	0	0	0	0	0	0	13012	580	20	4		4	RAB19	7	140125516	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	550184	140125516	19013147	452	95194											
MGAM	8972	broad.mit.edu	37	chr7	141750533	141750533	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatttcacaatcaacctacAaggaccccaataatttagca	3	11	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141750533	T	T	141750533	4	4	95	1	0	0	0	0	0	1	0	0	9634	131	5	5	2764	5	MGAM	7	141750533	Nonsense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1625017	141750533	17388130	453	95195											
KEL	3792	broad.mit.edu	37	chr7	142649419	142649419	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtctggcacgtggcatctTggttttcaagttaaactttg	11	7	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142649419	G	G	142649419	1	3	95	0	1	0	0	0	0	0	0	0	8212	1827	63	5		5	KEL	7	142649419	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	898886	142649419	16489244	454	95196											
GIMAP6	474344	broad.mit.edu	37	chr7	150325196	150325196	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagccaggtcttccttccGggtgaacaccaggatggtgt	13	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150325196	T	T	150325196	2	4	95	1	0	0	0	0	0	0	0	1	6447	1115	39	1		1	GIMAP6	7	150325196	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	7675777	150325196	8813467	455	95197											
DPP6	1804	broad.mit.edu	37	chr7	154595525	154595525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatgaagagccatgctgGggccgggacaccggtgtctg	18	9	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154595525	T	T	154595525	1	4	95	0	1	0	0	0	0	0	0	0	4770	1247	43	2		2	DPP6	7	154595525	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	4270329	154595525	4543138	456	95198											
UBE3C	9690	broad.mit.edu	37	chr7	157023909	157023909	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatttaaccccaaccaggGgttctttaagactactaatg	8	9	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157023909	A	A	157023909	3	1	95	1	0	0	0	0	1	0	0	0	17007	1232	43	4	2439	4	UBE3C	7	157023909	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2428384	157023909	2114754	457	95199											
UBE3C	9690	broad.mit.edu	37	chr7	157049761	157049761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaactttcatgacatttGctttaaagaccacttcataa	3	10	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157049761	T	T	157049761	1	4	95	0	1	0	0	0	0	0	0	0	17007	1334	46	3		3	UBE3C	7	157049761	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	25852	157049761	2088902	458	95200											
WDR60	55112	broad.mit.edu	37	chr7	158718996	158718996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctactcaagaaggtacGtgattcttcactttcttaaa	5	8	5	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158718996	T	T	158718996	1	4	95	0	1	0	0	0	0	0	0	0	17438	1160	40	3		3	WDR60	7	158718996	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1669235	158718996	419667	459	95201											
MYOM2	9172	broad.mit.edu	37	chr8	2017597	2017597	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgaggaaccattccgttcGgtgggactcccgattggatg	14	10	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2017597	T	T	2017597	2	4	95	1	0	0	0	0	0	0	0	1	10186	1103	39	1		1	MYOM2	8	2017597	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08		2017597	144346425	460	95202											
MSR1	4481	broad.mit.edu	37	chr8	16026396	16026396	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagctgtatatttaagtaaAaataaaccagtcatggcctg	8	6	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16026396	G	G	16026396	1	3	95	0	1	0	0	0	0	0	0	0	9980	29	1	5		5	MSR1	8	16026396	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	14008799	16026396	130337626	461	95203											
EGR3	1960	broad.mit.edu	37	chr8	22548806	22548806	+	Frame_Shift_Del	DEL	G	-	-													tgctgagcgcccctgaagccGggggcacccccaagatgccg							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22548806	-	-	22548806	7	5	95	1	0	1	0	1	0	0	0	0	5013	1116	39	0	823	0	EGR3	8	22548806	Frame_Shift_Del	DEL	G	TCGA-35-5375-01A-01D-1625-08	6522410	22548806	123815216	462	95204											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24253338	24253338	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccatcaaaattactcaagAtcaagaagctttttgttaca	4	8	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24253338	G	G	24253338	1	3	95	0	1	0	0	0	0	0	0	0	254	348	12	5		5	ADAMDEC1	8	24253338	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1704532	24253338	122110684	463	95205											
ADAM7	8756	broad.mit.edu	37	chr8	24298540	24298540	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctatctgtgaggtgcttcaTccctgcagtggaagtgagga	13	9	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24298540	C	C	24298540	1	2	95	0	1	0	0	0	0	0	0	0	251	1450	50	5		5	ADAM7	8	24298540	5'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	45202	24298540	122065482	464	95206											
GTF2E2	2961	broad.mit.edu	37	chr8	30464658	30464658	+	Frame_Shift_Del	DEL	C	-	-													atttacaaatagtatctggtCccccaaagccttaaagatag							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30464658	-	-	30464658	7	5	95	1	0	1	0	1	0	0	0	0	6922	855	30	0	328	0	GTF2E2	8	30464658	Frame_Shift_Del	DEL	C	TCGA-35-5375-01A-01D-1625-08	6166118	30464658	115899364	465	95207											
NRG1	3084	broad.mit.edu	37	chr8	32621438	32621438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagagacctctacttctcGtgacaccaccaaggctgcgg	10	13	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32621438	T	T	32621438	3	4	95	1	0	0	0	0	1	0	0	0	10742	1145	40	3	3212	3	NRG1	8	32621438	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2156780	32621438	113742584	466	95208											
UNC5D	137970	broad.mit.edu	37	chr8	35583900	35583900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcattccaggacttttcccCatggaaacaaccacagcttt	5	13	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35583900	A	A	35583900	3	1	95	1	0	0	0	0	1	0	0	0	17121	594	21	2	1572	2	UNC5D	8	35583900	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2962462	35583900	110780122	467	95209											
ADAM2	2515	broad.mit.edu	37	chr8	39607168	39607168	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgatttctattttcacctCatagtactgctacttacacc	3	11	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39607168	A	A	39607168	1	1	95	0	1	0	0	0	0	0	0	0	241	841	29	3		3	ADAM2	8	39607168	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4023268	39607168	106756854	468	95210											
IDO2	169355	broad.mit.edu	37	chr8	39840251	39840251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatcctggtccactcagaCttggtgctgacgaactggac	10	13	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39840251	A	A	39840251	3	1	95	1	0	0	0	0	1	0	0	0	7572	564	20	3	453	3	IDO2	8	39840251	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	233083	39840251	106523771	469	95211											
PXDNL	137902	broad.mit.edu	37	chr8	52321964	52321964	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcgccgcgccccacgtGggctgctgcaggttgttgca	15	14	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52321964	A	A	52321964	2	1	95	1	0	0	0	0	0	0	0	1	12956	1335	47	4		4	PXDNL	8	52321964	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	12481713	52321964	94042058	470	95212											
XKR4	114786	broad.mit.edu	37	chr8	56015035	56015035	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaggagggctctcctccGgtgtggaggcatcatggccg	15	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56015035	T	T	56015035	1	4	95	0	1	0	0	0	0	0	0	0	17560	1131	39	1		1	XKR4	8	56015035	5'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	3693071	56015035	90348987	471	95213											
IMPAD1	54928	broad.mit.edu	37	chr8	57876473	57876473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtaactgatttcttcaCcactcagggtagtcatatgc	8	10	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57876473	A	A	57876473	3	1	95	1	0	0	0	0	1	0	0	0	7795	507	18	3	124	3	IMPAD1	8	57876473	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1861438	57876473	88487549	472	95214											
CHD7	55636	broad.mit.edu	37	chr8	61778121	61778121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgcgaatggatctgttGgtgctgctactgccccggct	12	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61778121	T	T	61778121	3	4	95	1	0	0	0	0	1	0	0	0	3361	1348	47	2	8769	2	CHD7	8	61778121	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	3901648	61778121	84585901	473	95215											
C8orf45	157777	broad.mit.edu	37	chr8	67813464	67813464	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggcttttgcaaagaatttGaatgtagaattcagcttgga	10	4	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67813464	T	T	67813464	3	4	95	1	0	0	0	0	1	0	0	0	2456	1281	45	3	1696	3	C8orf45	8	67813464	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	6035343	67813464	78550558	474	95216											
PREX2	80243	broad.mit.edu	37	chr8	68942699	68942699	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtaccagaaagctgaagatCaaagggcgatttgttttttt	10	5	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68942699	G	G	68942699	1	3	95	0	1	0	0	0	0	0	0	0	12583	841	29	4		4	PREX2	8	68942699	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1129235	68942699	77421323	475	95217											
TRAM1	23471	broad.mit.edu	37	chr8	71510383	71510383	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttacatccaacatatactCttgaattacggcatgaataa	4	9	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71510383	G	G	71510383	3	3	95	1	0	0	0	0	1	0	0	0	16575	922	32	4	865	4	TRAM1	8	71510383	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2567684	71510383	74853639	476	95218											
LACTB2	51110	broad.mit.edu	37	chr8	71553275	71553275	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcagcattatgaattacTgggccatgtcctgaattaaa	8	8	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71553275	G	G	71553275	2	3	95	1	0	0	0	0	0	0	0	1	8670	1567	55	5		5	LACTB2	8	71553275	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	42892	71553275	74810747	477	95219											
KCNB2	9312	broad.mit.edu	37	chr8	73849991	73849991	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctttctcttcaagagagAggaggagcttcactgaaata	9	9	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73849991	T	T	73849991	3	4	95	1	0	0	0	0	1	0	0	0	8083	295	11	5	2407	5	KCNB2	8	73849991	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	2296716	73849991	72514031	478	95220											
CRISPLD1	83690	broad.mit.edu	37	chr8	75926376	75926376	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgttcagatgtacatttttCttaacaaaatgaaaatacct	4	7	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75926376	A	A	75926376	1	1	95	0	1	0	0	0	0	0	0	0	3914	928	32	3		3	CRISPLD1	8	75926376	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2076385	75926376	70437646	479	95221											
CA13	377677	broad.mit.edu	37	chr8	86163066	86163066	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgaaatatgactcttccctCcgaccacttagtatcaagta	6	11	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86163066	T	T	86163066	2	4	95	1	0	0	0	0	0	0	0	1	2540	842	30	4		4	CA13	8	86163066	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	10236690	86163066	60200956	480	95222											
CA2	760	broad.mit.edu	37	chr8	86388024	86388024	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccctttatgtttttcttTaggttggcagcgctaaaccg	9	9	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86388024	C	C	86388024	1	2	95	0	1	0	0	0	0	0	0	0	2542	1769	61	5		5	CA2	8	86388024	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	224958	86388024	59975998	481	95223											
LAPTM4B	55353	broad.mit.edu	37	chr8	98817774	98817774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaattacaaatatagactcGtgagttcatttgagctgata	7	5	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98817774	T	T	98817774	1	4	95	0	1	0	0	0	0	0	0	0	8697	1160	40	3		3	LAPTM4B	8	98817774	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	12429750	98817774	47546248	482	95224											
FBXO43	286151	broad.mit.edu	37	chr8	101153863	101153863	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttttaaagtgctagtaaCtaaagggctaaaattatttg	8	3	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101153863	G	G	101153863	3	3	95	1	0	0	0	0	1	0	0	0	5809	565	20	4	1523	4	FBXO43	8	101153863	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2336089	101153863	45210159	483	95225											
RNF19A	25897	broad.mit.edu	37	chr8	101276385	101276385	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaagagaaattggaactaCgccatagacataagctaaca	7	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101276385	T	T	101276385	3	4	95	1	0	0	0	0	1	0	0	0	13581	536	19	4	1187	4	RNF19A	8	101276385	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	122522	101276385	45087637	484	95226											
PKHD1L1	93035	broad.mit.edu	37	chr8	110448511	110448511	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaatgttactaacatttCtttttgttatagttgaactg	5	4	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110448511	T	T	110448511	1	4	95	0	1	0	0	0	0	0	0	0	12067	928	32	4		4	PKHD1L1	8	110448511	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	9172126	110448511	35915511	485	95227											
PKHD1L1	93035	broad.mit.edu	37	chr8	110527554	110527554	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtattgtctcagaaaaaatAcagtacacatggaaaatgta	8	5	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110527554	G	G	110527554	1	3	95	0	1	0	0	0	0	0	0	0	12067	406	14	5		5	PKHD1L1	8	110527554	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	79043	110527554	35836468	486	95228											
CSMD3	114788	broad.mit.edu	37	chr8	113259406	113259406	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatattcccctacaacttcAaatatggcaacaaacagagc	4	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113259406	G	G	113259406	1	3	95	0	1	0	0	0	0	0	0	0	3980	145	5	5		5	CSMD3	8	113259406	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	2731852	113259406	33104616	487	95229											
ASAP1	50807	broad.mit.edu	37	chr8	131199494	131199494	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacttacaactttgtctcaTaatctttccaggctttgtca	4	12	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131199494	C	C	131199494	3	2	95	1	0	0	0	0	1	0	0	0	1014	1406	49	5	2967	5	ASAP1	8	131199494	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	17940088	131199494	15164528	488	95230											
EFR3A	23167	broad.mit.edu	37	chr8	132968101	132968102	+	Frame_Shift_Ins	INS	-	G	G													aactgtttcagagaactgctINSgggtcgagcaacttttggga							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132968102	G	G	132968101	7	5	95	1	0	1	1	0	0	0	0	0	4998	1580	55	0	751	0	EFR3A	8	132968101	Frame_Shift_Ins	INS	-	TCGA-35-5375-01A-01D-1625-08	1768607	132968101	13395921	489	95231											
WISP1	8840	broad.mit.edu	37	chr8	134203380	134203380	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgatgcctgtgccactgacGtccaggcatgaggtggttcc	13	12	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134203380	A	A	134203380	1	1	95	0	1	0	0	0	0	0	0	0	17499	1160	40	4		4	WISP1	8	134203380	5'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	1235279	134203380	12160642	490	95232											
FAM135B	51059	broad.mit.edu	37	chr8	139153548	139153548	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accggaaccggggccgtgtgAggaccgatcggatgatgatg	17	9	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139153548	T	T	139153548	3	4	95	1	0	0	0	0	1	0	0	0	5495	304	11	5	553	5	FAM135B	8	139153548	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	4950168	139153548	7210474	491	95233											
TRAPPC9	83696	broad.mit.edu	37	chr8	141321324	141321324	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagggcagctgcctttcCggctctgcagtgcccatctc	11	16	2	1	rs11994830	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141321324	A	A	141321324	1	1	95	0	1	0	0	0	0	0	0	0	16589	667	23	1		1	TRAPPC9	8	141321324	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2167776	141321324	5042698	492	95234											
ZNF623	9831	broad.mit.edu	37	chr8	144732128	144732138	+	Frame_Shift_Del	DEL	ACTCACATAGG	-	-													ctggatttctgaggatgaaaActcacataggacgacgtcag					rs143378903	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144732138	-	-	144732128	7	5	95	1	0	1	0	1	0	0	0	0	18174	43	2	0	88	0	ZNF623	8	144732128	Frame_Shift_Del	DEL	ACTCACATAGG	TCGA-35-5375-01A-01D-1625-08	3410804	144732128	1631894	493	95235											
FAM83H	286077	broad.mit.edu	37	chr8	144812633	144812633	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagcggctgtaggcctcCgagccaccctcggccagtgc	14	15	0	0	rs118023699	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144812633	A	A	144812633	2	1	95	1	0	0	0	0	0	0	0	1	5693	639	23	1		1	FAM83H	8	144812633	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	80505	144812633	1551389	494	95236											
RECQL4	9401	broad.mit.edu	37	chr8	145742150	145742150	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagggctggtccggccTgggaggggaacaacagaaca	17	11	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145742150	G	G	145742150	5	3	95	1	0	0	0	0	0	0	1	0	13310	1594	55	5	3342	5	RECQL4	8	145742150	Splice_Site	SNP	T	TCGA-35-5375-01A-01D-1625-08	929517	145742150	621872	495	95237											
DOCK8	81704	broad.mit.edu	37	chr9	442069	442069	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaaaaacaagttagagtgGgtcatcaccaaaaataaaca	6	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	442069	T	T	442069	1	4	95	0	1	0	0	0	0	0	0	0	4733	1247	43	2		2	DOCK8	9	442069	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08		442069	140771362	496	95238											
KANK1	23189	broad.mit.edu	37	chr9	660066	660066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtcctgctggcactgaGgattatatccatataagaat	8	9	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	660066	T	T	660066	1	4	95	0	1	0	0	0	0	0	0	0	8046	1015	35	2		2	KANK1	9	660066	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	217997	660066	140553365	497	95239											
RFX3	5991	broad.mit.edu	37	chr9	3275463	3275463	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcaagttatctggcaaaaCctagcatgtgttcatactac	7	9	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3275463	T	T	3275463	1	4	95	0	1	0	0	0	0	0	0	0	13372	522	18	4		4	RFX3	9	3275463	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2615397	3275463	137937968	498	95240											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18777725	18777726	+	Silent	DNP	CC	AT	AT													ccacaccgcaagcccaccatCctgcgcaagatctcagcggc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	18777726	AT	AT	18777725	2	1	95	1	0	0	0	0	0	0	0	1	274	845	30	3		3	ADAMTSL1	9	18777725	Silent	DNP	CC	TCGA-35-5375-01A-01D-1625-08	15502262	18777725	122435706	499	95241											
DENND4C	55667	broad.mit.edu	37	chr9	19369895	19369895	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaacaagcactttagtagAaaccatcaggcagagtattc	8	8	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19369895	C	C	19369895	3	2	95	1	0	0	0	0	1	0	0	0	4475	246	9	5	4832	5	DENND4C	9	19369895	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	592170	19369895	121843536	500	95242											
MTAP	4507	broad.mit.edu	37	chr9	22006336	22006336	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtggagccatttaaagaAacacctaattgcaaagtttt	8	7	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22006336	C	C	22006336	1	2	95	0	1	0	0	0	0	0	0	0	10005	29	1	5		5	MTAP	9	22006336	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	2636441	22006336	119207095	501	95243											
ACO1	48	broad.mit.edu	37	chr9	32419181	32419181	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccattaccaaggtaacAatgtgcatcctcttctgtgg	7	12	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32419181	C	C	32419181	1	2	95	0	1	0	0	0	0	0	0	0	146	145	5	5		5	ACO1	9	32419181	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	10412845	32419181	108794250	502	95244											
UBAP1	51271	broad.mit.edu	37	chr9	34249927	34249927	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtacgagtgtgtcctcagaGccatgaagaagaaaggagag	14	7	1	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34249927	A	A	34249927	3	1	95	1	0	0	0	0	1	0	0	0	16962	971	34	4	1485	4	UBAP1	9	34249927	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1830746	34249927	106963504	503	95245											
VPS13A	23230	broad.mit.edu	37	chr9	79842251	79842251	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattaaaggcagatacattGtgttaattttattgttttta	6	2	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79842251	A	A	79842251	1	1	95	0	1	0	0	0	0	0	0	0	17316	1392	48	4		4	VPS13A	9	79842251	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	45592324	79842251	61371180	504	95246											
FRMD3	257019	broad.mit.edu	37	chr9	85925242	85925242	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacaaacccagtactcattTgtttgcctctaaaatatttt	4	9	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85925242	C	C	85925242	1	2	95	0	1	0	0	0	0	0	0	0	6110	1827	63	5		5	FRMD3	9	85925242	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	6082991	85925242	55288189	505	95247											
DAPK1	1612	broad.mit.edu	37	chr9	90321569	90321569	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaaccacggccagggcattGaggtccaggtccgcggcctg	14	14	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90321569	C	C	90321569	3	2	95	1	0	0	0	0	1	0	0	0	4268	1291	45	4	3681	4	DAPK1	9	90321569	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	4396327	90321569	50891862	506	95248											
FAM120A	23196	broad.mit.edu	37	chr9	96324522	96324522	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttatttccaccccagtgaTtagaacatttggaagaggtg	10	7	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96324522	G	G	96324522	3	3	95	1	0	0	0	0	1	0	0	0	5461	1493	52	5	3047	5	FAM120A	9	96324522	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	6002953	96324522	44888909	507	95249											
PHF2	5253	broad.mit.edu	37	chr9	96416955	96416955	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtccccaccatggggtcTcttcggcatccctggcatgc	11	16	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96416955	G	G	96416955	1	3	95	0	1	0	0	0	0	0	0	0	11925	1566	54	5		5	PHF2	9	96416955	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	92433	96416955	44796476	508	95250											
ERP44	23071	broad.mit.edu	37	chr9	102822465	102822465	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagttacctgaaaatttAaaaaatgagaaattaataaa	4	5	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102822465	T	T	102822465	1	4	95	0	1	0	0	0	0	0	0	0	5285	377	13	5		5	ERP44	9	102822465	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	6405510	102822465	38390966	509	95251											
RNF20	56254	broad.mit.edu	37	chr9	104323348	104323348	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataggtgatacaatggtgtCacttatttgtacatcctaca	7	7	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104323348	T	T	104323348	1	4	95	0	1	0	0	0	0	0	0	0	13584	841	29	4		4	RNF20	9	104323348	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1500883	104323348	36890083	510	95252											
PPP3R2	5535	broad.mit.edu	37	chr9	104357257	104357257	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcggagaggggagcaggggCggtgagctcgggcggggctc	24	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104357257	T	T	104357257	1	4	95	0	1	0	0	0	0	0	0	0	12502	783	27	4		4	PPP3R2	9	104357257	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	33909	104357257	36856174	511	95253											
GRIN3A	116443	broad.mit.edu	37	chr9	104449372	104449372	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgttccagtcttcctgGcacagcaacaagctaaaatt	8	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104449372	C	C	104449372	3	2	95	1	0	0	0	0	1	0	0	0	6849	1195	42	4	2569	4	GRIN3A	9	104449372	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	92115	104449372	36764059	512	95254											
OR13C5	138799	broad.mit.edu	37	chr9	107361805	107361805	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccataattcccaaggaaaAagaaaaataaaatgggaaaa	7	5	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107361805	G	G	107361805	1	3	95	0	1	0	0	0	0	0	0	0	11031	29	1	5		5	OR13C5	9	107361805	5'Flank	SNP	A	TCGA-35-5375-01A-01D-1625-08	2912433	107361805	33851626	513	95255											
ZNF462	58499	broad.mit.edu	37	chr9	109691376	109691376	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgatgcgtattacactcActgcttggcagcctccagga	9	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109691376	G	G	109691376	3	3	95	1	0	0	0	0	1	0	0	0	18053	159	6	5	5189	5	ZNF462	9	109691376	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	2329571	109691376	31522055	514	95256											
CTNNAL1	8727	broad.mit.edu	37	chr9	111732802	111732802	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaatatgtctacagtttaaCtttcacatcctcatcctcca	2	13	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111732802	G	G	111732802	1	3	95	0	1	0	0	0	0	0	0	0	4049	580	20	4		4	CTNNAL1	9	111732802	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2041426	111732802	29480629	515	95257											
HSDL2	84263	broad.mit.edu	37	chr9	115166449	115166449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaagaaagtgagtgtgaCagtgccatttgataaaatgt	12	4	0	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115166449	A	A	115166449	1	1	95	0	1	0	0	0	0	0	0	0	7461	493	17	3		3	HSDL2	9	115166449	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3433647	115166449	26046982	516	95258											
DFNB31	25861	broad.mit.edu	37	chr9	117166003	117166003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagctgaaactgggcctcCagattcctaatccagtgctc	9	13	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117166003	A	A	117166003	1	1	95	0	1	0	0	0	0	0	0	0	4495	609	21	2		2	DFNB31	9	117166003	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1999554	117166003	24047428	517	95259											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123173543	123173543	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacagagccacaggattcaTacttaggttggtcagactcc	9	11	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123173543	C	C	123173543	1	2	95	0	1	0	0	0	0	0	0	0	3176	1421	49	5		5	CDK5RAP2	9	123173543	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	6007540	123173543	18039888	518	95260											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123206000	123206000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggctgtcctggtaggCtgctcccacagggggctgag	16	12	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123206000	A	A	123206000	3	1	95	1	0	0	0	0	1	0	0	0	3176	797	28	3	2699	3	CDK5RAP2	9	123206000	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	32457	123206000	18007431	519	95261											
LHX6	26468	broad.mit.edu	37	chr9	124988605	124988605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaagtggcctccgaatgcGcccggggcctgccctcggcg	14	16	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124988605	T	T	124988605	1	4	95	0	1	0	0	0	0	0	0	0	8847	1102	38	3		3	LHX6	9	124988605	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1782605	124988605	16224826	520	95262											
OR1J2	26740	broad.mit.edu	37	chr9	125273352	125273352	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgcggactaagtacaaatCgatcctctatgaggaatgca	9	9	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125273352	T	T	125273352	3	4	95	1	0	0	0	0	1	0	0	0	11054	893	31	4	274	4	OR1J2	9	125273352	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	284747	125273352	15940079	521	95263											
SLC2A8	29988	broad.mit.edu	37	chr9	130168428	130168428	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgttcagtcatttgtgcCctccaggtctcctggcatgt	10	11	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130168428	T	T	130168428	1	4	95	0	1	0	0	0	0	0	0	0	14665	638	22	4		4	SLC2A8	9	130168428	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4895076	130168428	11045003	522	95264											
USP20	10868	broad.mit.edu	37	chr9	132618567	132618567	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcatgcctgctctttttctCtcctctcaactcacacaggg	5	16	5	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132618567	G	G	132618567	1	3	95	0	1	0	0	0	0	0	0	0	17178	928	32	4		4	USP20	9	132618567	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2450139	132618567	8594864	523	95265											
USP20	10868	broad.mit.edu	37	chr9	132620196	132620196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccgtgttcctttgagatGgcagagcctcagtcccttgt	11	12	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132620196	T	T	132620196	1	4	95	0	1	0	0	0	0	0	0	0	17178	1363	47	2		2	USP20	9	132620196	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1629	132620196	8593235	524	95266											
NUP214	8021	broad.mit.edu	37	chr9	134003738	134003738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgataaagtccaaggcttGctagttcctatgaaattccc	8	9	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134003738	T	T	134003738	3	4	95	1	0	0	0	0	1	0	0	0	10857	1310	46	3	271	3	NUP214	9	134003738	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1383542	134003738	7209693	525	95267											
SETX	23064	broad.mit.edu	37	chr9	135206681	135206681	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccttacagagctgttccgTatatgtcggatctctctatt	7	10	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135206681	C	C	135206681	3	2	95	1	0	0	0	0	1	0	0	0	14254	1628	57	5	7116	5	SETX	9	135206681	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	1202943	135206681	6006750	526	95268											
NOTCH1	4851	broad.mit.edu	37	chr9	139395153	139395153	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccaggtgcaaggcggtctCgcccgtgcggtctgtctggt	17	12	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139395153	A	A	139395153	4	1	95	1	0	0	0	0	0	1	0	0	10642	893	31	3	1898	3	NOTCH1	9	139395153	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	4188472	139395153	1818278	527	95269											
EHMT1	79813	broad.mit.edu	37	chr9	140705884	140705884	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagccagcaggaagcctGcactgagctctggcttgtgt	14	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140705884	A	A	140705884	1	1	95	0	1	0	0	0	0	0	0	0	5023	1334	46	4		4	EHMT1	9	140705884	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1310731	140705884	507547	528	95270											
CELF2	10659	broad.mit.edu	37	chr10	11317166	11317166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcaaagacaagaagcaGgggaagagaaccaagaatga	15	5	0	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11317166	T	T	11317166	1	4	95	0	1	0	0	0	0	0	0	0	3246	1015	35	2		2	CELF2	10	11317166	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08		11317166	124217581	529	95271											
ACBD7	414149	broad.mit.edu	37	chr10	15059922	15059922	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaggcaggagaatcacttGaactctggaggcagaggttg	15	7	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15059922	T	T	15059922	1	4	95	0	1	0	0	0	0	0	0	0	127	1305	45	3		3	ACBD7	10	15059922	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3742756	15059922	120474825	530	95272											
TRDMT1	1787	broad.mit.edu	37	chr10	17199442	17199442	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagatctttaaaacctacccTttggtaaagcacacggacct	6	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17199442	A	A	17199442	3	1	95	1	0	0	0	0	1	0	0	0	16591	1606	56	5	306	5	TRDMT1	10	17199442	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2139520	17199442	118335305	531	95273											
VIM	7431	broad.mit.edu	37	chr10	17279223	17279223	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattttggtttttttttttAaacaggttatcaacgaaact	5	4	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17279223	T	T	17279223	1	4	95	0	1	0	0	0	0	0	0	0	17293	377	13	5		5	VIM	10	17279223	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	79781	17279223	118255524	532	95274											
MRC1	4360	broad.mit.edu	37	chr10	17891798	17891798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacagtgataatatacttGgctttaatcctgggagcacc	9	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17891798	T	T	17891798	1	4	95	0	1	0	0	0	0	0	0	0	9850	1363	47	2		2	MRC1	10	17891798	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	612575	17891798	117642949	533	95275											
SPAG6	9576	broad.mit.edu	37	chr10	22657676	22657676	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagatttattaggtaaatcCagttttgcttagtaaaacat	6	5	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22657676	T	T	22657676	1	4	95	0	1	0	0	0	0	0	0	0	15098	609	21	4		4	SPAG6	10	22657676	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4765878	22657676	112877071	534	95276											
PTF1A	256297	broad.mit.edu	37	chr10	23481565	23481565	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accagtcttcacgggaccccCtggaggacggcgatgagctg	14	13	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23481565	G	G	23481565	3	3	95	1	0	0	0	0	1	0	0	0	12846	680	24	4	108	4	PTF1A	10	23481565	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	823889	23481565	112053182	535	95277											
KIAA1217	56243	broad.mit.edu	37	chr10	24762579	24762579	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccccgaccacatcattgcAtatcaccgcaccgccatccg	6	19	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24762579	G	G	24762579	2	3	95	1	0	0	0	0	0	0	0	1	8286	204	8	5		5	KIAA1217	10	24762579	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	1281014	24762579	110772168	536	95278											
MYO3A	53904	broad.mit.edu	37	chr10	26501001	26501001	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcactgaagctgcggccCtgatctccgcagaggctgcc	13	15	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26501001	T	T	26501001	1	4	95	0	1	0	0	0	0	0	0	0	10170	696	24	4		4	MYO3A	10	26501001	3'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	1738422	26501001	109033746	537	95279											
C10orf68	79741	broad.mit.edu	37	chr10	33137737	33137737	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttactctttttgcatctTacttttttttcagaaatatc	2	8	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33137737	A	A	33137737	1	1	95	0	1	0	0	0	0	0	0	0	1624	1769	61	5		5	C10orf68	10	33137737	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	6636736	33137737	102397010	538	95280											
OGDHL	55753	broad.mit.edu	37	chr10	50964749	50964749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgttggagctgagaccCcttcccttcagtgcctggcc	11	13	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50964749	A	A	50964749	1	1	95	0	1	0	0	0	0	0	0	0	10935	638	22	2		2	OGDHL	10	50964749	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	17827012	50964749	84569998	539	95281											
PCDH15	65217	broad.mit.edu	37	chr10	56287633	56287633	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctcccctagctagtttGcaatctaaagagagaaaata	8	9	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56287633	A	A	56287633	2	1	95	1	0	0	0	0	0	0	0	1	11605	1311	46	4		4	PCDH15	10	56287633	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	5322884	56287633	79247114	540	95282											
IPMK	253430	broad.mit.edu	37	chr10	59997554	59997555	+	Missense_Mutation	DNP	CC	AA	AA													gtaactgtttcaaaactgtgCcatctggatgttgcagtata							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	59997555	AA	AA	59997554	3	1	95	1	0	0	0	0	1	0	0	0	7862	739	26	3	1058	3	IPMK	10	59997554	Missense_Mutation	DNP	CC	TCGA-35-5375-01A-01D-1625-08	3709921	59997554	75537193	541	95283											
FAM13C	220965	broad.mit.edu	37	chr10	61013993	61013993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgaaatgacaactagcCttgtttgcagtatatactgc	7	7	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61013993	A	A	61013993	1	1	95	0	1	0	0	0	0	0	0	0	5500	696	24	2		2	FAM13C	10	61013993	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1016439	61013993	74520754	542	95284											
FAM13C	220965	broad.mit.edu	37	chr10	61112135	61112135	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatacgctgtccaccagcacGgtcgcctctacattctgctg	8	15	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61112135	A	A	61112135	2	1	95	1	0	0	0	0	0	0	0	1	5500	1103	39	4		4	FAM13C	10	61112135	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	98142	61112135	74422612	543	95285											
JMJD1C	221037	broad.mit.edu	37	chr10	64974642	64974642	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcccagggaggctggctatTttttagggtctcttctcctg	11	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64974642	A	A	64974642	3	1	95	1	0	0	0	0	1	0	0	0	8020	1841	64	5	6413	5	JMJD1C	10	64974642	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	3862507	64974642	70560105	544	95286											
STOX1	219736	broad.mit.edu	37	chr10	70645895	70645896	+	Frame_Shift_Ins	INS	-	T	T													ttgagagatctctgaccgagINStacaacagcacaatggagag							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70645896	T	T	70645895	7	5	95	1	0	1	1	0	0	0	0	0	15437	1020	36	0	2353	0	STOX1	10	70645895	Frame_Shift_Ins	INS	-	TCGA-35-5375-01A-01D-1625-08	5671253	70645895	64888852	545	95287											
SLC29A3	55315	broad.mit.edu	37	chr10	73111446	73111446	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgcggtcaccattgtcTgcatggtgatcctcagcggt	11	10	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73111446	C	C	73111446	3	2	95	1	0	0	0	0	1	0	0	0	14650	1580	55	5	525	5	SLC29A3	10	73111446	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2465551	73111446	62423301	546	95288											
CDH23	64072	broad.mit.edu	37	chr10	73567303	73567303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaagaacttccatctgcAgcccgatgggtgtctgctgg	13	10	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73567303	T	T	73567303	3	4	95	1	0	0	0	0	1	0	0	0	3138	188	7	5	8914	5	CDH23	10	73567303	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	455857	73567303	61967444	547	95289											
PPP3CB	5532	broad.mit.edu	37	chr10	75214372	75214372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaacacattcttatacCaagatcgatggaatttaaaa	5	7	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75214372	A	A	75214372	1	1	95	0	1	0	0	0	0	0	0	0	12499	609	21	2		2	PPP3CB	10	75214372	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1647069	75214372	60320375	548	95290											
USP54	159195	broad.mit.edu	37	chr10	75276381	75276381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagctgagaatcacagaacCttgtgatattcacccaggaa	8	9	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75276381	A	A	75276381	3	1	95	1	0	0	0	0	1	0	0	0	17212	681	24	2	1271	2	USP54	10	75276381	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	62009	75276381	60258366	549	95291											
WAPAL	23063	broad.mit.edu	37	chr10	88277334	88277334	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaaaacttacctgaagTtattaatttattacagctac	3	7	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88277334	G	G	88277334	3	3	95	1	0	0	0	0	1	0	0	0	17375	1725	60	5	3151	5	WAPAL	10	88277334	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	13000953	88277334	47257413	550	95292											
IDE	3416	broad.mit.edu	37	chr10	94225417	94225417	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacagtaccctgctatttcCccactttcctctcacccaac	2	19	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94225417	T	T	94225417	1	4	95	0	1	0	0	0	0	0	0	0	7563	638	22	4		4	IDE	10	94225417	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5948083	94225417	41309330	551	95293											
NOC3L	64318	broad.mit.edu	37	chr10	96116774	96116774	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtacctgagataatctaTaattctggcccaaatcatca	6	9	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96116774	C	C	96116774	1	2	95	0	1	0	0	0	0	0	0	0	10609	1421	49	5		5	NOC3L	10	96116774	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1891357	96116774	39417973	552	95294											
C10orf12	26148	broad.mit.edu	37	chr10	98744545	98744545	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagctgcaagggacagaaGcagccaaccccccaaaaaga	10	14	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98744545	C	C	98744545	3	2	95	1	0	0	0	0	1	0	0	0	1600	971	34	4	3400	4	C10orf12	10	98744545	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2627771	98744545	36790202	553	95295											
SLIT1	6585	broad.mit.edu	37	chr10	98799639	98799639	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcagctaatgcctgctctTggtcacctcctcctcccatg	7	16	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98799639	A	A	98799639	1	1	95	0	1	0	0	0	0	0	0	0	14853	1827	63	5		5	SLIT1	10	98799639	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	55094	98799639	36735108	554	95296											
CRTAC1	55118	broad.mit.edu	37	chr10	99625320	99625320	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctcagcagctgggctcGcagctctccttaaccaccga	9	17	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99625320	A	A	99625320	2	1	95	1	0	0	0	0	0	0	0	1	3928	1079	38	4		4	CRTAC1	10	99625320	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	825681	99625320	35909427	555	95297											
LOXL4	84171	broad.mit.edu	37	chr10	100015439	100015439	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctctgtgcctgagcagcGcaccccactcatcaccacct	7	19	3	1	rs149982668		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100015439	A	A	100015439	3	1	95	1	0	0	0	0	1	0	0	0	8989	1087	38	4	808	4	LOXL4	10	100015439	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	390119	100015439	35519308	556	95298											
C10orf2	56652	broad.mit.edu	37	chr10	102748989	102748989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggagaccagcaaccccGtcccctggaggccctgaacg	11	17	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102748989	T	T	102748989	3	4	95	1	0	0	0	0	1	0	0	0	1608	1145	40	3	1024	3	C10orf2	10	102748989	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2733550	102748989	32785758	557	95299											
PDZD7	79955	broad.mit.edu	37	chr10	102781973	102781973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagccctcacttggacaCatagatgcccaggccaaact	7	16	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102781973	A	A	102781973	3	1	95	1	0	0	0	0	1	0	0	0	11798	478	17	3	865	3	PDZD7	10	102781973	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	32984	102781973	32752774	558	95300											
MGEA5	10724	broad.mit.edu	37	chr10	103567562	103567562	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgatggagacttgggcatGagcaaaagaactgaatacct	12	6	0	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103567562	A	A	103567562	3	1	95	1	0	0	0	0	1	0	0	0	9648	1290	45	4	2221	4	MGEA5	10	103567562	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	785589	103567562	31967185	559	95301											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118355692	118355693	+	Intron	INS	-	G	G													tttagaaaaaccacagcaaaINSaaatgtcctgaaaatacaat							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118355693	G	G	118355692	6	5	95	0	1	1	1	0	0	0	0	0	12245	29	1	0		0	PNLIPRP1	10	118355692	Intron	INS	-	TCGA-35-5375-01A-01D-1625-08	14788130	118355692	17179055	560	95302											
SFXN4	119559	broad.mit.edu	37	chr10	120923759	120923759	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatggcagcagaaaaataaaGatataaatactaacagttgg	8	4	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120923759	C	C	120923759	1	2	95	0	1	0	0	0	0	0	0	0	14310	957	33	4		4	SFXN4	10	120923759	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2568067	120923759	14610988	561	95303											
CPXM2	119587	broad.mit.edu	37	chr10	125521440	125521440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtgccctcctccttctgGaagtcctccgtgtggcacac	9	16	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125521440	T	T	125521440	3	4	95	1	0	0	0	0	1	0	0	0	3870	1165	41	3	561	3	CPXM2	10	125521440	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	4597681	125521440	10013307	562	95304											
OR52A4	390053	broad.mit.edu	37	chr11	5142720	5142721	+	Frame_Shift_Ins	INS	-	A	A													acagaatggaatcccaatccINSagcattgtacagattcaaaa							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5142721	A	A	5142720	7	5	95	1	0	1	1	0	0	0	0	0	11203	595	21	0	829	0	OR52A4	11	5142720	Frame_Shift_Ins	INS	-	TCGA-35-5375-01A-01D-1625-08		5142720	129863796	563	95305											
OR56B1	387748	broad.mit.edu	37	chr11	5757979	5757979	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttggcatcctctgtatggTagacatgggtctggccacta	11	11	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5757979	C	C	5757979	3	2	95	1	0	0	0	0	1	0	0	0	11231	1638	57	5	235	5	OR56B1	11	5757979	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	615259	5757979	129248537	564	95306											
NLRP14	338323	broad.mit.edu	37	chr11	7059854	7059854	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcttctttctttcctgatTttgggctgctattgtatttg	7	8	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7059854	C	C	7059854	3	2	95	1	0	0	0	0	1	0	0	0	10571	1841	64	5	39	5	NLRP14	11	7059854	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	1301875	7059854	127946662	565	95307											
CYP2R1	120227	broad.mit.edu	37	chr11	14913772	14913772	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcccgagctggaggtgcgAactccacagcagccctgaga	14	14	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14913772	T	T	14913772	1	4	95	0	1	0	0	0	0	0	0	0	4206	261	9	5		5	CYP2R1	11	14913772	5'Flank	SNP	A	TCGA-35-5375-01A-01D-1625-08	7853918	14913772	120092744	566	95308											
SOX6	55553	broad.mit.edu	37	chr11	16340103	16340103	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaagtaacactggtcaTtatctcacggtcccgactcc	6	14	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16340103	A	A	16340103	3	1	95	1	0	0	0	0	1	0	0	0	15069	1493	52	5	2250	5	SOX6	11	16340103	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	1426331	16340103	118666413	567	95309											
USH1C	10083	broad.mit.edu	37	chr11	17522677	17522677	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtccacaccgccttccagGgccaggtctaaggatccctc	10	16	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17522677	T	T	17522677	2	4	95	1	0	0	0	0	0	0	0	1	17160	1219	43	2		2	USH1C	11	17522677	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	1182574	17522677	117483839	568	95310											
NELL1	4745	broad.mit.edu	37	chr11	20691366	20691366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggatccgggaaatgggGgtgcccacagaccacggcgg	18	10	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20691366	T	T	20691366	1	4	95	0	1	0	0	0	0	0	0	0	10428	1247	43	2		2	NELL1	11	20691366	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3168689	20691366	114315150	569	95311											
ANO5	203859	broad.mit.edu	37	chr11	22281220	22281220	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcactcacaggatcatgcttGaactttattgtcatcttgat	6	9	5	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22281220	A	A	22281220	2	1	95	1	0	0	0	0	0	0	0	1	700	1281	45	4		4	ANO5	11	22281220	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	1589854	22281220	112725296	570	95312											
CSTF3	1479	broad.mit.edu	37	chr11	33112133	33112133	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggatataaatccatgaacTtgtatctatctactagtaaa	5	6	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33112133	C	C	33112133	3	2	95	1	0	0	0	0	1	0	0	0	4020	1609	56	5	587	5	CSTF3	11	33112133	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	10830913	33112133	101894383	571	95313											
C11orf41	25758	broad.mit.edu	37	chr11	33689482	33689482	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccccagagctctccctccAggcttcctcgtcagtacagc	7	19	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33689482	T	T	33689482	3	4	95	1	0	0	0	0	1	0	0	0	1652	179	7	5	5428	5	C11orf41	11	33689482	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	577349	33689482	101317034	572	95314											
RAG1	5896	broad.mit.edu	37	chr11	36596365	36596365	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagatttttcagcctttgcAtgcccttcggaatgctgaga	9	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36596365	C	C	36596365	3	2	95	1	0	0	0	0	1	0	0	0	13111	217	8	5	1513	5	RAG1	11	36596365	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	2906883	36596365	98410151	573	95315											
RAG1	5896	broad.mit.edu	37	chr11	36597145	36597145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacgttatgaggtctggcGttccaacccttaccatgagt	11	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36597145	T	T	36597145	3	4	95	1	0	0	0	0	1	0	0	0	13111	1145	40	3	2293	3	RAG1	11	36597145	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	780	36597145	98409371	574	95316											
LRRC4C	57689	broad.mit.edu	37	chr11	40136099	40136100	+	Nonsense_Mutation	DNP	CC	AA	AA													aggcatgggcaggtggctttCcatgggtgtgtctcccgtaa							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	40136100	AA	AA	40136099	4	1	95	1	0	0	0	0	0	1	0	0	9095	864	30	3	182	3	LRRC4C	11	40136099	Nonsense_Mutation	DNP	CC	TCGA-35-5375-01A-01D-1625-08	3538954	40136099	94870417	575	95317											
LRRC4C	57689	broad.mit.edu	37	chr11	40136282	40136282	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggtagtcttcatgacctCatcaattcctgggatcccac	7	12	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40136282	T	T	40136282	3	4	95	1	0	0	0	0	1	0	0	0	9095	835	29	4	365	4	LRRC4C	11	40136282	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	183	40136282	94870234	576	95318											
CRY2	1408	broad.mit.edu	37	chr11	45882290	45882290	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgggacctgtgagtggatGaggaaagccaccctcaaagc	13	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45882290	C	C	45882290	1	2	95	0	1	0	0	0	0	0	0	0	3936	1305	45	4		4	CRY2	11	45882290	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	5746008	45882290	89124226	577	95319											
KIAA0652	9776	broad.mit.edu	37	chr11	46677781	46677781	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttattttttcttccatacAggatatattttggagaagtt	6	5	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46677781	G	G	46677781	5	3	95	1	0	0	0	0	0	0	1	0	8258	202	7	5	479	5	KIAA0652	11	46677781	Splice_Site	SNP	A	TCGA-35-5375-01A-01D-1625-08	795491	46677781	88328735	578	95320											
CELF1	10658	broad.mit.edu	37	chr11	47498796	47498796	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggactctgcctttaaacaCaaagcatctgtccaaggcac	7	13	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47498796	G	G	47498796	1	3	95	0	1	0	0	0	0	0	0	0	3245	493	17	4		4	CELF1	11	47498796	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	821015	47498796	87507720	579	95321											
OR4A5	81318	broad.mit.edu	37	chr11	51411896	51411896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaacaatgacattgggaCcacagaaagggagactgtac	11	7	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51411896	A	A	51411896	3	1	95	1	0	0	0	0	1	0	0	0	11137	507	18	3	451	3	OR4A5	11	51411896	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3913100	51411896	83594620	580	95322											
OR4C15	81309	broad.mit.edu	37	chr11	55322792	55322792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaatcccttgctcaatcCtttgatttacactttcagga	4	11	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55322792	A	A	55322792	3	1	95	1	0	0	0	0	1	0	0	0	11142	681	24	2	1012	2	OR4C15	11	55322792	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3910896	55322792	79683724	581	95323											
OR9G4	283189	broad.mit.edu	37	chr11	56510794	56510794	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcattcaaaaatcctcctAtgtaggagccagcaacaagc	8	11	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56510794	G	G	56510794	3	3	95	1	0	0	0	0	1	0	0	0	11345	449	16	5	492	5	OR9G4	11	56510794	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1188002	56510794	78495722	582	95324											
OR1S2	219958	broad.mit.edu	37	chr11	57970940	57970940	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgtggatgatactcccagGacagctctgatgatgcagac	12	9	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57970940	A	A	57970940	2	1	95	1	0	0	0	0	0	0	0	1	11067	1161	41	4		4	OR1S2	11	57970940	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	1460146	57970940	77035576	583	95325											
ZFP91	80829	broad.mit.edu	37	chr11	58379890	58379890	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttcatgataatcctgcagGaatggctatttaaaaatttc	6	7	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58379890	T	T	58379890	1	4	95	0	1	0	0	0	0	0	0	0	17781	1189	41	3		3	ZFP91	11	58379890	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	408950	58379890	76626626	584	95326											
OR10V1	390201	broad.mit.edu	37	chr11	59481123	59481123	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagatttctagaactgccaGattagccaggaaaaagtaca	9	7	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59481123	T	T	59481123	3	4	95	1	0	0	0	0	1	0	0	0	11014	933	33	3	737	3	OR10V1	11	59481123	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1101233	59481123	75525393	585	95327											
MS4A14	84689	broad.mit.edu	37	chr11	60150531	60150531	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttaagttcctacaaagTatggtccctgggaagtttat	8	8	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60150531	A	A	60150531	1	1	95	0	1	0	0	0	0	0	0	0	9952	1653	57	5		5	MS4A14	11	60150531	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	669408	60150531	74855985	586	95328											
PCNXL3	399909	broad.mit.edu	37	chr11	65384017	65384017	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggcagtgccctgggctcTgggacgtggagagagaggaa	19	8	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65384017	A	A	65384017	1	1	95	0	1	0	0	0	0	0	0	0	11687	1595	55	5		5	PCNXL3	11	65384017	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	5233486	65384017	69622499	587	95329											
RPS6KB2	6199	broad.mit.edu	37	chr11	67199988	67199988	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcgggaattatgagcccctCtttccccaagaagaaataaa	9	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67199988	T	T	67199988	1	4	95	0	1	0	0	0	0	0	0	0	13768	928	32	4		4	RPS6KB2	11	67199988	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1815971	67199988	67806528	588	95330											
MYO7A	4647	broad.mit.edu	37	chr11	76867145	76867145	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatcatcaggtgggcgGcccagcacctgtgtggagct	15	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76867145	A	A	76867145	1	1	95	0	1	0	0	0	0	0	0	0	10176	1218	42	4		4	MYO7A	11	76867145	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	9667157	76867145	58139371	589	95331											
RSF1	51773	broad.mit.edu	37	chr11	77445589	77445589	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgccaagccagattcgagTgctcccatcttgtgcaagtt	9	12	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77445589	C	C	77445589	1	2	95	0	1	0	0	0	0	0	0	0	13810	1711	59	5		5	RSF1	11	77445589	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	578444	77445589	57560927	590	95332											
CTSC	1075	broad.mit.edu	37	chr11	88059549	88059549	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctgctctgtctcttagCcccaacgtctgttcatggct	9	14	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88059549	T	T	88059549	1	4	95	0	1	0	0	0	0	0	0	0	4065	739	26	4		4	CTSC	11	88059549	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	10613960	88059549	46946967	591	95333											
BCO2	83875	broad.mit.edu	37	chr11	112053873	112053874	+	Intron	DNP	GA	AT	AT													tgaagggagctatatttgaaGagatgctaacaccactatac							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	112053874	AT	AT	112053873	1	1	95	0	1	0	0	0	0	0	0	0	1390	957	33	4		4	BCO2	11	112053873	Intron	DNP	GA	TCGA-35-5375-01A-01D-1625-08	23994324	112053873	22952643	592	95334											
NNMT	4837	broad.mit.edu	37	chr11	114167428	114167428	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcttttcaagatattctgCctaggtaagtctgttgtctg	8	7	5	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114167428	T	T	114167428	2	4	95	1	0	0	0	0	0	0	0	1	10604	747	26	4		4	NNMT	11	114167428	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	2113555	114167428	20839088	593	95335											
ARCN1	372	broad.mit.edu	37	chr11	118454750	118454750	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtataatccagtgtactttaGaataccaggtgaagggtgta	11	5	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118454750	T	T	118454750	1	4	95	0	1	0	0	0	0	0	0	0	844	957	33	3		3	ARCN1	11	118454750	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	4287322	118454750	16551766	594	95336											
PVRL1	5818	broad.mit.edu	37	chr11	119545336	119545336	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgtcctccctttgcccGgatagataagttgacagaaa	8	11	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119545336	A	A	119545336	1	1	95	0	1	0	0	0	0	0	0	0	12947	1116	39	4		4	PVRL1	11	119545336	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1090586	119545336	15461180	595	95337											
PKNOX2	63876	broad.mit.edu	37	chr11	125221151	125221151	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgctcagcggtgttaaCggtgcggccccctttctcct	12	15	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125221151	T	T	125221151	1	4	95	0	1	0	0	0	0	0	0	0	12078	551	19	4		4	PKNOX2	11	125221151	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5675815	125221151	9785365	596	95338											
CCDC77	84318	broad.mit.edu	37	chr12	537876	537876	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggagatcctttaaacagaAaaaggttacttacttgggac	10	6	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	537876	G	G	537876	1	3	95	0	1	0	0	0	0	0	0	0	2879	29	1	5		5	CCDC77	12	537876	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08		537876	133314019	597	95339											
PZP	5858	broad.mit.edu	37	chr12	9305864	9305864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgaatcctgaacggtgaCctgtgcagttttctcagttc	10	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9305864	A	A	9305864	3	1	95	1	0	0	0	0	1	0	0	0	12977	507	18	3	626	3	PZP	12	9305864	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	8767988	9305864	124546031	598	95340											
PZP	5858	broad.mit.edu	37	chr12	9309677	9309677	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctatcctgatgctctccctCtccgcacctcccagacaggc	6	19	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9309677	A	A	9309677	1	1	95	0	1	0	0	0	0	0	0	0	12977	928	32	3		3	PZP	12	9309677	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3813	9309677	124542218	599	95341											
KLRC1	3821	broad.mit.edu	37	chr12	10600141	10600141	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaacttactcatgtttgaAagccaaaccattcattgtca	4	10	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10600141	C	C	10600141	3	2	95	1	0	0	0	0	1	0	0	0	8486	14	1	5	129	5	KLRC1	12	10600141	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	1290464	10600141	123251754	600	95342											
TAS2R14	50840	broad.mit.edu	37	chr12	11091748	11091748	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaaactatttcctaaatttCcaattataaattccacaatt	1	8	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11091748	G	G	11091748	3	3	95	1	0	0	0	0	1	0	0	0	15687	855	30	4	897	4	TAS2R14	12	11091748	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	491607	11091748	122760147	601	95343											
PIK3C2G	5288	broad.mit.edu	37	chr12	18435367	18435367	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctgtgttaccaaaacctCaaaatacgaataaagaatgc	5	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18435367	T	T	18435367	4	4	95	1	0	0	0	0	0	1	0	0	12006	827	29	4	354	4	PIK3C2G	12	18435367	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	7343619	18435367	115416528	602	95344											
SLCO1C1	53919	broad.mit.edu	37	chr12	20868014	20868014	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatacggtagaaatgcagaaTaaatacttaacttttaaagt	6	4	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20868014	A	A	20868014	1	1	95	0	1	0	0	0	0	0	0	0	14839	1421	49	5		5	SLCO1C1	12	20868014	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	2432647	20868014	112983881	603	95345											
PYROXD1	79912	broad.mit.edu	37	chr12	21593274	21593274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttaaagtaatttgtcctaAttttttttctctctttttaa	2	6	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21593274	T	T	21593274	1	4	95	0	1	0	0	0	0	0	0	0	12974	116	4	5		5	PYROXD1	12	21593274	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	725260	21593274	112258621	604	95346											
LDHB	3945	broad.mit.edu	37	chr12	21807648	21807648	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacattacacgtatatctGcatatgaaatccaaatagaa	4	7	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21807648	T	T	21807648	1	4	95	0	1	0	0	0	0	0	0	0	8773	1334	46	3		3	LDHB	12	21807648	5'Flank	SNP	G	TCGA-35-5375-01A-01D-1625-08	214374	21807648	112044247	605	95347											
SOX5	6660	broad.mit.edu	37	chr12	23716278	23716278	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgttcccgtcggagttgctCcttcatttgccgagcttctt	9	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23716278	A	A	23716278	4	1	95	1	0	0	0	0	0	1	0	0	15068	864	30	3	909	3	SOX5	12	23716278	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1908630	23716278	110135617	606	95348											
C12orf11	55726	broad.mit.edu	37	chr12	27081679	27081679	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattcgtcctctatttccaaCacgttctgcattctccatga	4	13	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27081679	G	G	27081679	3	3	95	1	0	0	0	0	1	0	0	0	1688	478	17	4	1716	4	C12orf11	12	27081679	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3365401	27081679	106770216	607	95349											
BICD1	636	broad.mit.edu	37	chr12	32429129	32429129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctggaccggcctgctaGcccatgctccaatgttaatg	9	15	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32429129	T	T	32429129	1	4	95	0	1	0	0	0	0	0	0	0	1434	986	34	3		3	BICD1	12	32429129	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	5347450	32429129	101422766	608	95350											
GXYLT1	283464	broad.mit.edu	37	chr12	42499835	42499835	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taaaaaaaggatatcagtgtCgacatacaatagtgagtcaa	8	5	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42499835	G	G	42499835	3	3	95	1	0	0	0	0	1	0	0	0	6968	884	31	4	689	4	GXYLT1	12	42499835	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	10070706	42499835	91352060	609	95351											
NELL2	4753	broad.mit.edu	37	chr12	45168672	45168672	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaagaatttccatgttagaGtttagtagttttcaagaatt	7	3	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45168672	A	A	45168672	1	1	95	0	1	0	0	0	0	0	0	0	10429	1044	36	4		4	NELL2	12	45168672	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2668837	45168672	88683223	610	95352											
SLC38A2	54407	broad.mit.edu	37	chr12	46758520	46758520	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggaatcagtattagttTaatgaaacagatttaaggca	10	4	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46758520	C	C	46758520	1	2	95	0	1	0	0	0	0	0	0	0	14718	1769	61	5		5	SLC38A2	12	46758520	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1589848	46758520	87093375	611	95353											
COL2A1	1280	broad.mit.edu	37	chr12	48376560	48376560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcattcctcctgagcccgCtcctcttctccctgctcagt	5	19	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48376560	A	A	48376560	1	1	95	0	1	0	0	0	0	0	0	0	3719	812	28	3		3	COL2A1	12	48376560	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1618040	48376560	85475335	612	95354											
KRT4	3851	broad.mit.edu	37	chr12	53201035	53201035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctaccgctgaccacagCtgcagaaaagacacaaaaga	10	11	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53201035	A	A	53201035	1	1	95	0	1	0	0	0	0	0	0	0	8548	811	28	3		3	KRT4	12	53201035	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4824475	53201035	80650860	613	95355											
PCBP2	5094	broad.mit.edu	37	chr12	53852848	53852848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggaaaatatatttatGgctaattttgaggaattttt	9	1	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53852848	T	T	53852848	1	4	95	0	1	0	0	0	0	0	0	0	11595	1363	47	2		2	PCBP2	12	53852848	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	651813	53852848	79999047	614	95356											
OR6C6	283365	broad.mit.edu	37	chr12	55688394	55688394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaatcactaataccagtGtgaccacaagtgtcaccaca	7	11	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55688394	T	T	55688394	3	4	95	1	0	0	0	0	1	0	0	0	11288	1377	48	3	323	3	OR6C6	12	55688394	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1835546	55688394	78163501	615	95357											
PTGES3	10728	broad.mit.edu	37	chr12	57058542	57058542	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtatcactgtataaacataCtttttatatacacttacttt	2	7	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57058542	G	G	57058542	1	3	95	0	1	0	0	0	0	0	0	0	12854	580	20	4		4	PTGES3	12	57058542	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1370148	57058542	76793353	616	95358											
TAC3	6866	broad.mit.edu	37	chr12	57407195	57407195	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaaaccaagaacagatgtCtaaatggggagtgaagttgg	14	4	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57407195	A	A	57407195	1	1	95	0	1	0	0	0	0	0	0	0	15618	928	32	3		3	TAC3	12	57407195	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	348653	57407195	76444700	617	95359											
SHMT2	6472	broad.mit.edu	37	chr12	57627019	57627019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggaccccaagactggccGggagatcccttacacatttg	11	12	0	2	rs139092594		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57627019	T	T	57627019	3	4	95	1	0	0	0	0	1	0	0	0	14399	1116	39	1	944	1	SHMT2	12	57627019	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	219824	57627019	76224876	618	95360											
FAM19A2	338811	broad.mit.edu	37	chr12	62148764	62148764	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcttattacagcatctgtGgagtgccaccacctcacaag	8	12	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62148764	A	A	62148764	3	1	95	1	0	0	0	0	1	0	0	0	5579	1348	47	4	259	4	FAM19A2	12	62148764	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	4521745	62148764	71703131	619	95361											
CAND1	55832	broad.mit.edu	37	chr12	67698483	67698483	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaactgagctggtaaatgtAttacctggggccctaactca	9	9	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67698483	T	T	67698483	2	4	95	1	0	0	0	0	0	0	0	1	2641	436	16	5		5	CAND1	12	67698483	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	5549719	67698483	66153412	620	95362											
PTPRB	5787	broad.mit.edu	37	chr12	70954367	70954367	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatcattattggctttatcTcttgtcattaaaatcagaat	4	6	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70954367	A	A	70954367	1	1	95	0	1	0	0	0	0	0	0	0	12904	1566	54	5		5	PTPRB	12	70954367	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	3255884	70954367	62897528	621	95363											
LGR5	8549	broad.mit.edu	37	chr12	71947174	71947174	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaatggggacattttaaggGaggaaaacctcctgagcccc	11	10	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71947174	A	A	71947174	1	1	95	0	1	0	0	0	0	0	0	0	8829	1189	41	4		4	LGR5	12	71947174	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	992807	71947174	61904721	622	95364											
ZFC3H1	196441	broad.mit.edu	37	chr12	72004450	72004450	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacaggaaaacatcgagaTaaaataaaagataaaaagca	6	4	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72004450	G	G	72004450	1	3	95	0	1	0	0	0	0	0	0	0	17759	1421	49	5		5	ZFC3H1	12	72004450	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	57276	72004450	61847445	623	95365											
TPH2	121278	broad.mit.edu	37	chr12	72338118	72338118	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaatccaggaaatctcgGcgaagaagttctgaggttga	12	6	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72338118	T	T	72338118	2	4	95	1	0	0	0	0	0	0	0	1	16526	1190	42	3		3	TPH2	12	72338118	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	333668	72338118	61513777	624	95366											
C12orf63	374467	broad.mit.edu	37	chr12	97158003	97158003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtacagttcattagcctgGattgcaataagagctgctgc	10	8	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97158003	T	T	97158003	3	4	95	1	0	0	0	0	1	0	0	0	1719	1183	41	3	3488	3	C12orf63	12	97158003	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	24819885	97158003	36693892	625	95367											
ANKS1B	56899	broad.mit.edu	37	chr12	99793432	99793432	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatggttagttccctcattcTtgacttctgtggttcccaca	7	11	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99793432	G	G	99793432	3	3	95	1	0	0	0	0	1	0	0	0	689	1609	56	5	2361	5	ANKS1B	12	99793432	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2635429	99793432	34058463	626	95368											
GNPTAB	79158	broad.mit.edu	37	chr12	102160038	102160038	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaatactcccagtacctccAcctcctgcaatatagcgact	4	17	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102160038	C	C	102160038	2	2	95	1	0	0	0	0	0	0	0	1	6609	146	6	5		5	GNPTAB	12	102160038	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	2366606	102160038	31691857	627	95369											
STAB2	55576	broad.mit.edu	37	chr12	103984725	103984725	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaattaggaccgagtgccgAtcctgcgctctcaaccttgg	10	13	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103984725	C	C	103984725	2	2	95	1	0	0	0	0	0	0	0	1	15356	320	12	5		5	STAB2	12	103984725	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	1824687	103984725	29867170	628	95370											
STAB2	55576	broad.mit.edu	37	chr12	104054003	104054003	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggatttcccaatagattAtgggtcatttttcttgattg	8	7	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104054003	T	T	104054003	1	4	95	0	1	0	0	0	0	0	0	0	15356	464	16	5		5	STAB2	12	104054003	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	69278	104054003	29797892	629	95371											
STAB2	55576	broad.mit.edu	37	chr12	104064447	104064447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaactatgtgtcctaatgGcccatgggccctgcctttgc	11	12	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104064447	T	T	104064447	1	4	95	0	1	0	0	0	0	0	0	0	15356	1218	42	3		3	STAB2	12	104064447	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	10444	104064447	29787448	630	95372											
RFX4	5992	broad.mit.edu	37	chr12	107080751	107080751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcctgggtgagtgagaCgggcaagaaagaagtgagca	17	6	0	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107080751	A	A	107080751	3	1	95	1	0	0	0	0	1	0	0	0	13373	536	19	3	662	3	RFX4	12	107080751	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3016304	107080751	26771144	631	95373											
SSH1	54434	broad.mit.edu	37	chr12	109182837	109182837	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgggacctgctggccaagtGggccacaggggaggacgtga	18	10	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109182837	A	A	109182837	3	1	95	1	0	0	0	0	1	0	0	0	15302	1348	47	4	1076	4	SSH1	12	109182837	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2102086	109182837	24669058	632	95374											
DAO	1610	broad.mit.edu	37	chr12	109294151	109294151	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccactgtccctctcggacCtggccaccttctctcttgcc	6	19	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109294151	A	A	109294151	1	1	95	0	1	0	0	0	0	0	0	0	4264	696	24	2		2	DAO	12	109294151	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	111314	109294151	24557744	633	95375											
SVOP	55530	broad.mit.edu	37	chr12	109306364	109306364	+	Frame_Shift_Del	DEL	G	-	-													acctgcaccgtgcattcctcGgccgaccatctcctggcccc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109306364	-	-	109306364	7	5	95	1	0	1	0	1	0	0	0	0	15541	1124	39	0	56	0	SVOP	12	109306364	Frame_Shift_Del	DEL	G	TCGA-35-5375-01A-01D-1625-08	12213	109306364	24545531	634	95376											
ATP2A2	488	broad.mit.edu	37	chr12	110734292	110734293	+	Intron	DNP	GG	CT	CT													tgtttagtacaaatgttactGgtgggcttcctttcttttta							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	110734293	CT	CT	110734292	1	2	95	0	1	0	0	0	0	0	0	0	1141	1363	47	4		4	ATP2A2	12	110734292	Intron	DNP	GG	TCGA-35-5375-01A-01D-1625-08	1427928	110734292	23117603	635	95377											
DDX54	79039	broad.mit.edu	37	chr12	113612640	113612640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggcctgcagggcccacCtggacacaacctcctgggat	12	16	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113612640	A	A	113612640	1	1	95	0	1	0	0	0	0	0	0	0	4405	696	24	2		2	DDX54	12	113612640	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2878348	113612640	20239255	636	95378											
RBM19	9904	broad.mit.edu	37	chr12	114261162	114261162	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcaagagaggagaaaagaAcagccgagagggttgggagg	19	4	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114261162	G	G	114261162	1	3	95	0	1	0	0	0	0	0	0	0	13229	58	2	5		5	RBM19	12	114261162	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	648522	114261162	19590733	637	95379											
NOS1	4842	broad.mit.edu	37	chr12	117693640	117693640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagctcaggttagaactcGgatctccttgagacctagat	9	11	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117693640	T	T	117693640	1	4	95	0	1	0	0	0	0	0	0	0	10636	1131	39	1		1	NOS1	12	117693640	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3432478	117693640	16158255	638	95380											
CCDC60	160777	broad.mit.edu	37	chr12	119961558	119961558	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtaacaccatgagggcCaagttttacagcgtagccca	11	10	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119961558	T	T	119961558	2	4	95	1	0	0	0	0	0	0	0	1	2859	581	21	4		4	CCDC60	12	119961558	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	2267918	119961558	13890337	639	95381											
PRKAB1	5564	broad.mit.edu	37	chr12	120112112	120112112	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataactccgcagaccttccaCgttatgatttctgcctatct	5	13	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120112112	T	T	120112112	1	4	95	0	1	0	0	0	0	0	0	0	12601	551	19	4		4	PRKAB1	12	120112112	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	150554	120112112	13739783	640	95382											
WDR66	144406	broad.mit.edu	37	chr12	122396983	122396983	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagcttttcccatgactccCagtatatggcaactgctgta	7	11	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122396983	T	T	122396983	4	4	95	1	0	0	0	0	0	1	0	0	17444	595	21	4	2162	4	WDR66	12	122396983	Nonsense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2284871	122396983	11454912	641	95383											
CLIP1	6249	broad.mit.edu	37	chr12	122849349	122849349	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacgaacacaaagcgaaaGaggagaggcacccgatatat	11	8	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122849349	C	C	122849349	1	2	95	0	1	0	0	0	0	0	0	0	3564	957	33	4		4	CLIP1	12	122849349	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	452366	122849349	11002546	642	95384											
RILPL1	353116	broad.mit.edu	37	chr12	123983237	123983237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcgatcagggctttccCctgggcctccaccaccgtga	10	16	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123983237	A	A	123983237	3	1	95	1	0	0	0	0	1	0	0	0	13470	623	22	2	572	2	RILPL1	12	123983237	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1133888	123983237	9868658	643	95385											
EIF2B1	1967	broad.mit.edu	37	chr12	124106443	124106443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcttgtccagtctgcgCgaccttgagagtgtctgcct	13	11	3	1	rs141136209		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124106443	A	A	124106443	3	1	95	1	0	0	0	0	1	0	0	0	5040	768	27	3	143	3	EIF2B1	12	124106443	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	123206	124106443	9745452	644	95386											
DNAH10	196385	broad.mit.edu	37	chr12	124401328	124401328	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaattcagatggttatgaGggagaccgcaacctcagatc	11	9	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124401328	A	A	124401328	1	1	95	0	1	0	0	0	0	0	0	0	4638	1015	35	4		4	DNAH10	12	124401328	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	294885	124401328	9450567	645	95387											
DHX37	57647	broad.mit.edu	37	chr12	125453021	125453021	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggccctcccacactcgtGctttcagcgagggtttagga	12	12	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125453021	A	A	125453021	1	1	95	0	1	0	0	0	0	0	0	0	4550	1334	46	4		4	DHX37	12	125453021	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1051693	125453021	8398874	646	95388											
AACS	65985	broad.mit.edu	37	chr12	125621357	125621357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtgacgccatccgcatgGgcttgtctgcgcgacacgtg	13	14	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125621357	T	T	125621357	3	4	95	1	0	0	0	0	1	0	0	0	9	1232	43	2	1894	2	AACS	12	125621357	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	168336	125621357	8230538	647	95389											
RIMBP2	23504	broad.mit.edu	37	chr12	130890816	130890816	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaacataaaattaatcGtatttttctacacaacagta	4	6	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130890816	A	A	130890816	1	1	95	0	1	0	0	0	0	0	0	0	13472	1160	40	4		4	RIMBP2	12	130890816	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	5269459	130890816	2961079	648	95390											
RIMBP2	23504	broad.mit.edu	37	chr12	130897369	130897369	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataaatcaagcactgtaaTtgattggttcagaaatacaa	6	5	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130897369	A	A	130897369	1	1	95	0	1	0	0	0	0	0	0	0	13472	1508	52	5		5	RIMBP2	12	130897369	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	6553	130897369	2954526	649	95391											
POLE	5426	broad.mit.edu	37	chr12	133225372	133225372	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccaggctcggtgctcagCgctcacacacgttgttttga	11	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133225372	T	T	133225372	1	4	95	0	1	0	0	0	0	0	0	0	12291	783	27	4		4	POLE	12	133225372	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2328003	133225372	626523	650	95392											
TPTE2	93492	broad.mit.edu	37	chr13	20049553	20049553	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtatttttagtagagAtggggtttcaccatgttagc	10	4	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20049553	G	G	20049553	1	3	95	0	1	0	0	0	0	0	0	0	16555	348	12	5		5	TPTE2	13	20049553	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08		20049553	95120325	651	95393											
SACS	26278	broad.mit.edu	37	chr13	23914212	23914212	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttaaggctctaaaagaaTctttcccttcatttagatga	5	7	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23914212	A	A	23914212	3	1	95	1	0	0	0	0	1	0	0	0	13915	1435	50	5	9940	5	SACS	13	23914212	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	3864659	23914212	91255666	652	95394											
CENPJ	55835	broad.mit.edu	37	chr13	25467083	25467083	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatagaagaatagagacccaGcaatgaaacagaatagccag	9	7	0	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25467083	A	A	25467083	1	1	95	0	1	0	0	0	0	0	0	0	3264	986	34	4		4	CENPJ	13	25467083	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1552871	25467083	89702795	653	95395											
SLC46A3	283537	broad.mit.edu	37	chr13	29287437	29287437	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcaaagcaagctccccaaAatgtggtataattgccacaa	8	10	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29287437	G	G	29287437	3	3	95	1	0	0	0	0	1	0	0	0	14760	14	1	5	975	5	SLC46A3	13	29287437	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	3820354	29287437	85882441	654	95396											
FRY	10129	broad.mit.edu	37	chr13	32768132	32768132	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttacgacattatactctTgaagaatatatgacataaaa	5	6	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32768132	A	A	32768132	1	1	95	0	1	0	0	0	0	0	0	0	6123	1827	63	5		5	FRY	13	32768132	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	3480695	32768132	82401746	655	95397											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37678436	37678436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttgcctgtctgggtttGggcctgctgaccctgcccac	12	14	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37678436	T	T	37678436	3	4	95	1	0	0	0	0	1	0	0	0	3985	1357	47	2	59	2	CSNK1A1L	13	37678436	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	4910304	37678436	77491442	656	95398											
POSTN	10631	broad.mit.edu	37	chr13	38158289	38158289	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtcatcattgctattatCtccatcatgaaactagtaaa	4	8	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38158289	A	A	38158289	1	1	95	0	1	0	0	0	0	0	0	0	12354	928	32	3		3	POSTN	13	38158289	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	479853	38158289	77011589	657	95399											
RB1	5925	broad.mit.edu	37	chr13	48954377	48954377	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaatggccacatatagcAgtaagttaaattttcataaa	6	5	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48954377	T	T	48954377	4	4	95	1	0	0	0	0	0	1	0	0	13206	202	7	5	1560	5	RB1	13	48954377	Nonsense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	10796088	48954377	66215501	658	95400											
LECT1	11061	broad.mit.edu	37	chr13	53307506	53307507	+	Intron	DNP	CA	AT	AT													attgtaaatctgaaagtgagCataagagttagtgatgcttt							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	53307507	AT	AT	53307506	1	1	95	0	1	0	0	0	0	0	0	0	8784	725	25	3		3	LECT1	13	53307506	Intron	DNP	CA	TCGA-35-5375-01A-01D-1625-08	4353129	53307506	61862372	659	95401											
PCDH17	27253	broad.mit.edu	37	chr13	58206676	58206676	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgcccccaccttacaggtCtgggatgtacctttccatct	7	16	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58206676	T	T	58206676	1	4	95	0	1	0	0	0	0	0	0	0	11606	928	32	4		4	PCDH17	13	58206676	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	4899170	58206676	56963202	660	95402											
SLC15A1	6564	broad.mit.edu	37	chr13	99364873	99364874	+	Intron	DNP	GG	TT	TT													aaaaatcgaatttcaaaacaGgaccaacaactttgtcaggg							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	99364874	TT	TT	99364873	1	4	95	0	1	0	0	0	0	0	0	0	14511	1015	35	2		2	SLC15A1	13	99364873	Intron	DNP	GG	TCGA-35-5375-01A-01D-1625-08	41158197	99364873	15805005	661	95403											
TPP2	7174	broad.mit.edu	37	chr13	103249312	103249312	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccgcctccggcccgaggCcgcacgggtgtcctcgcgct	13	21	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103249312	A	A	103249312	1	1	95	0	1	0	0	0	0	0	0	0	16536	754	26	3		3	TPP2	13	103249312	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	3884439	103249312	11920566	662	95404											
COL4A2	1284	broad.mit.edu	37	chr13	111134904	111134904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatggtttccaaggcatgCctggactcaaagggagaccc	13	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111134904	A	A	111134904	3	1	95	1	0	0	0	0	1	0	0	0	3722	739	26	3	2922	3	COL4A2	13	111134904	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	7885592	111134904	4034974	663	95405											
POTEG	404785	broad.mit.edu	37	chr14	19553542	19553542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggagcggcaagagcaaCgtgggcacttctggagacca	17	9	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19553542	A	A	19553542	3	1	95	1	0	0	0	0	1	0	0	0	12362	535	19	3	128	3	POTEG	14	19553542	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08		19553542	87795998	664	95406											
OR4K13	390433	broad.mit.edu	37	chr14	20502513	20502513	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgagcacccgtgggctcatGatggtcatgtaatggagggg	17	7	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20502513	T	T	20502513	2	4	95	1	0	0	0	0	0	0	0	1	11162	1280	45	3		3	OR4K13	14	20502513	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	948971	20502513	86847027	665	95407											
TEP1	7011	broad.mit.edu	37	chr14	20848649	20848649	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaagctataaaagggtggCagaatgtcactggggagcca	14	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20848649	T	T	20848649	1	4	95	0	1	0	0	0	0	0	0	0	15881	725	25	4		4	TEP1	14	20848649	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	346136	20848649	86500891	666	95408											
METTL3	56339	broad.mit.edu	37	chr14	21971304	21971304	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atattgtgagagtattttcaCatgacccctaccttcttgct	6	10	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21971304	G	G	21971304	1	3	95	0	1	0	0	0	0	0	0	0	9594	493	17	4		4	METTL3	14	21971304	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1122655	21971304	85378236	667	95409											
MYH6	4624	broad.mit.edu	37	chr14	23861994	23861994	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccagaaagtggcggaagaGggctgtgattgaccttattc	14	8	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23861994	A	A	23861994	1	1	95	0	1	0	0	0	0	0	0	0	10132	1015	35	4		4	MYH6	14	23861994	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1890690	23861994	83487546	668	95410											
PRKD1	5587	broad.mit.edu	37	chr14	30103587	30103587	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caactcctctaattaaagctAgcaaggcaagagaacattgt	7	9	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30103587	G	G	30103587	1	3	95	0	1	0	0	0	0	0	0	0	12624	435	15	5		5	PRKD1	14	30103587	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	6241593	30103587	77245953	669	95411											
NUBPL	80224	broad.mit.edu	37	chr14	32328285	32328285	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagtcattcaatgtctgctGaagagaaatacagaacaaat	8	6	3	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32328285	T	T	32328285	1	4	95	0	1	0	0	0	0	0	0	0	10812	1305	45	3		3	NUBPL	14	32328285	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2224698	32328285	75021255	670	95412											
MIPOL1	145282	broad.mit.edu	37	chr14	37838830	37838830	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcaagaacgtgctctgaagGtaaatctccgttccttcttg	8	10	4	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37838830	C	C	37838830	5	2	95	1	0	0	0	0	0	0	1	0	9686	1275	44	4	967	4	MIPOL1	14	37838830	Splice_Site	SNP	G	TCGA-35-5375-01A-01D-1625-08	5510545	37838830	69510710	671	95413											
FANCM	57697	broad.mit.edu	37	chr14	45633758	45633758	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tattatcctttctgaaggacGagaggaacgtgtaagtagag	12	5	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45633758	C	C	45633758	3	2	95	1	0	0	0	0	1	0	0	0	5728	1058	37	4	1816	4	FANCM	14	45633758	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	7794928	45633758	61715782	672	95414											
TRIM9	114088	broad.mit.edu	37	chr14	51475753	51475753	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgcttcaagcaccagcatCcactcaggatgttgctctct	7	15	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51475753	A	A	51475753	1	1	95	0	1	0	0	0	0	0	0	0	16674	870	30	3		3	TRIM9	14	51475753	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5841995	51475753	55873787	673	95415											
C14orf149	112849	broad.mit.edu	37	chr14	59946027	59946027	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaccgccatatgcaatgTccaccatcacctttccatgt	5	15	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59946027	C	C	59946027	3	2	95	1	0	0	0	0	1	0	0	0	1765	1667	58	5	529	5	C14orf149	14	59946027	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	8470274	59946027	47403513	674	95416											
FNTB	2342	broad.mit.edu	37	chr14	65479031	65479032	+	Intron	DNP	CC	AT	AT													cttataaactgtttgtctttCcaggcttgttttgcagaggg							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	65479032	AT	AT	65479031	1	1	95	0	1	0	0	0	0	0	0	0	6036	870	30	3		3	FNTB	14	65479031	Intron	DNP	CC	TCGA-35-5375-01A-01D-1625-08	5533004	65479031	41870509	675	95417											
EIF2S1	1965	broad.mit.edu	37	chr14	67841071	67841071	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attttgttgataggattttaGtaggaaataattataagtat	8	0	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67841071	C	C	67841071	1	2	95	0	1	0	0	0	0	0	0	0	5049	1044	36	4		4	EIF2S1	14	67841071	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2362040	67841071	39508469	676	95418											
ZFYVE26	23503	broad.mit.edu	37	chr14	68257558	68257558	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggaatgtccatggataggAgatcttgccaaccattagac	11	8	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68257558	T	T	68257558	1	4	95	0	1	0	0	0	0	0	0	0	17794	319	11	5		5	ZFYVE26	14	68257558	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	416487	68257558	39091982	677	95419											
ZFYVE26	23503	broad.mit.edu	37	chr14	68275994	68275994	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagctttctccggaaaacaaCtgggagtaacttctagaaga	9	8	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68275994	G	G	68275994	3	3	95	1	0	0	0	0	1	0	0	0	17794	565	20	4	7489	4	ZFYVE26	14	68275994	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	18436	68275994	39073546	678	95420											
PCNX	22990	broad.mit.edu	37	chr14	71444699	71444699	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgacctaaatcttctagcGtaatccatcggacagcttct	6	12	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71444699	A	A	71444699	3	1	95	1	0	0	0	0	1	0	0	0	11685	1145	40	4	1667	4	PCNX	14	71444699	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	3168705	71444699	35904841	679	95421											
GALC	2581	broad.mit.edu	37	chr14	88420675	88420675	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagaggcagtatacagttAtagaggacagaagcagaaaa	12	5	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88420675	G	G	88420675	1	3	95	0	1	0	0	0	0	0	0	0	6263	464	16	5		5	GALC	14	88420675	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	16975976	88420675	18928865	680	95422											
EML5	161436	broad.mit.edu	37	chr14	89088816	89088816	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagcagcaaagacagaGtaatgttggcaagcaaatcc	10	7	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89088816	A	A	89088816	1	1	95	0	1	0	0	0	0	0	0	0	5142	1044	36	4		4	EML5	14	89088816	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	668141	89088816	18260724	681	95423											
FOXN3	1112	broad.mit.edu	37	chr14	89647120	89647120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccctcggctcaggaccCgcgctccattttggatcact	9	16	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89647120	A	A	89647120	3	1	95	1	0	0	0	0	1	0	0	0	6081	652	23	1	638	1	FOXN3	14	89647120	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	558304	89647120	17702420	682	95424											
GOLGA5	9950	broad.mit.edu	37	chr14	93299761	93299761	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaagttatagaaggactAtttttatttgaaagaaactt	7	2	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93299761	G	G	93299761	1	3	95	0	1	0	0	0	0	0	0	0	6620	464	16	5		5	GOLGA5	14	93299761	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	3652641	93299761	14049779	683	95425											
SERPINA3	12	broad.mit.edu	37	chr14	95088688	95088688	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgttttctagagagataggtGagctctacctgccaaagttt	10	8	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95088688	A	A	95088688	3	1	95	1	0	0	0	0	1	0	0	0	14203	1291	45	4	938	4	SERPINA3	14	95088688	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1788927	95088688	12260852	684	95426											
CYP46A1	10858	broad.mit.edu	37	chr14	100172838	100172838	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctacaactccaacctgcaatCtgggtctcaaggggaggcca	10	13	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100172838	G	G	100172838	1	3	95	0	1	0	0	0	0	0	0	0	4215	928	32	4		4	CYP46A1	14	100172838	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5084150	100172838	7176702	685	95427											
DYNC1H1	1778	broad.mit.edu	37	chr14	102506081	102506081	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccgtggggtaagagcactCacgcccacaggaggatgcca	13	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102506081	T	T	102506081	1	4	95	0	1	0	0	0	0	0	0	0	4881	841	29	4		4	DYNC1H1	14	102506081	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2333243	102506081	4843459	686	95428											
DYNC1H1	1778	broad.mit.edu	37	chr14	102510613	102510613	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttttcctcccccagggCaggcagaacatctcaccgga	9	16	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102510613	T	T	102510613	2	4	95	1	0	0	0	0	0	0	0	1	4881	697	25	4		4	DYNC1H1	14	102510613	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	4532	102510613	4838927	687	95429											
CINP	51550	broad.mit.edu	37	chr14	102816167	102816167	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgaatttgaaagccttgtCagcttcttaaagtaccagat	7	7	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102816167	G	G	102816167	1	3	95	0	1	0	0	0	0	0	0	0	3462	841	29	4		4	CINP	14	102816167	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	305554	102816167	4533373	688	95430											
TECPR2	9895	broad.mit.edu	37	chr14	102881178	102881178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaatgctgggccttgttGtagaaggtgctttagggttt	13	6	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102881178	T	T	102881178	1	4	95	0	1	0	0	0	0	0	0	0	15866	1392	48	3		3	TECPR2	14	102881178	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	65011	102881178	4468362	689	95431											
C14orf73	91828	broad.mit.edu	37	chr14	103566613	103566613	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagagtcccaaggaggcTgaggagccacagactccagc	13	13	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103566613	A	A	103566613	2	1	95	1	0	0	0	0	0	0	0	1	1792	1567	55	5		5	C14orf73	14	103566613	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	685435	103566613	3782927	690	95432											
EIF5	1983	broad.mit.edu	37	chr14	103805183	103805183	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgacactcagtgatgatttgGaaagaacaattgaggagagg	13	4	1	6			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103805183	A	A	103805183	3	1	95	1	0	0	0	0	1	0	0	0	5082	1175	41	4	719	4	EIF5	14	103805183	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	238570	103805183	3544357	691	95433											
KIF26A	26153	broad.mit.edu	37	chr14	104639595	104639595	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcgcctgcctactgtcCcaccttgggggaggggggct	17	12	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104639595	T	T	104639595	1	4	95	0	1	0	0	0	0	0	0	0	8364	638	22	4		4	KIF26A	14	104639595	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	834412	104639595	2709945	692	95434											
AHNAK2	113146	broad.mit.edu	37	chr14	105418113	105418113	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcttcacgtccacctgGccagcgtggacctccaggtc	12	15	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105418113	T	T	105418113	2	4	95	1	0	0	0	0	0	0	0	1	415	1190	42	3		3	AHNAK2	14	105418113	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	778518	105418113	1931427	693	95435											
MTA1	9112	broad.mit.edu	37	chr14	105916508	105916508	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctggagtctctgcccGccacgcacatcaggtagccc	12	16	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105916508	A	A	105916508	3	1	95	1	0	0	0	0	1	0	0	0	10002	1087	38	4	373	4	MTA1	14	105916508	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	498395	105916508	1433032	694	95436											
OCA2	4948	broad.mit.edu	37	chr15	28230271	28230271	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccaagaaggcagagaggaCggccgcgatgagacagagca	16	9	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28230271	G	G	28230271	3	3	95	1	0	0	0	0	1	0	0	0	10910	536	19	4	1261	4	OCA2	15	28230271	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08		28230271	74301121	695	95437											
RPAP1	26015	broad.mit.edu	37	chr15	41827925	41827925	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctggaacaaagagataaAaggggatttgctcaatttcc	9	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41827925	C	C	41827925	1	2	95	0	1	0	0	0	0	0	0	0	13652	29	1	5		5	RPAP1	15	41827925	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	13597654	41827925	60703467	696	95438											
MGA	23269	broad.mit.edu	37	chr15	42041756	42041756	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagatgaaacaaactcaaTaaaaagagagcaagaaacga	8	5	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42041756	G	G	42041756	3	3	95	1	0	0	0	0	1	0	0	0	9633	1406	49	5	6013	5	MGA	15	42041756	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	213831	42041756	60489636	697	95439											
TP53BP1	7158	broad.mit.edu	37	chr15	43739760	43739760	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagtataaaataagcaaaAataataagaactgcaagaaa	6	3	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43739760	C	C	43739760	1	2	95	0	1	0	0	0	0	0	0	0	16507	29	1	5		5	TP53BP1	15	43739760	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1698004	43739760	58791632	698	95440											
DMXL2	23312	broad.mit.edu	37	chr15	51741321	51741321	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gactccagccccaatgtttcGaaatatggactgcttagcat	8	11	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51741321	A	A	51741321	4	1	95	1	0	0	0	0	0	1	0	0	4635	1066	37	4	143	4	DMXL2	15	51741321	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	8001561	51741321	50790071	699	95441											
DMXL2	23312	broad.mit.edu	37	chr15	51741341	51741341	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatatggactgcttagcaTgttcacttttaaatgaatga	8	5	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51741341	A	A	51741341	3	1	95	1	0	0	0	0	1	0	0	0	4635	1464	51	5	163	5	DMXL2	15	51741341	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	20	51741341	50790051	700	95442											
FOXB1	27023	broad.mit.edu	37	chr15	60297294	60297294	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagatctacaagttcatcatGgaccgcttcccctactacag	7	13	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60297294	C	C	60297294	3	2	95	1	0	0	0	0	1	0	0	0	6050	1348	47	4	134	4	FOXB1	15	60297294	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	8555953	60297294	42234098	701	95443											
PIF1	80119	broad.mit.edu	37	chr15	65108869	65108869	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagtccagcacacgtagGccctgcaggctgcgggcccg	13	15	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65108869	A	A	65108869	2	1	95	1	0	0	0	0	0	0	0	1	11978	1190	42	4		4	PIF1	15	65108869	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	4811575	65108869	37422523	702	95444											
LMAN1L	79748	broad.mit.edu	37	chr15	75108976	75108976	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacctccctgcaggacAgtcctgccatccgtgtgctg	9	16	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75108976	T	T	75108976	3	4	95	1	0	0	0	0	1	0	0	0	8911	188	7	5	456	5	LMAN1L	15	75108976	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	10000107	75108976	27422416	703	95445											
AGBL1	123624	broad.mit.edu	37	chr15	86807971	86807971	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagccagaagaaccagctcTgtggtggacttcaagatgat	11	8	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86807971	C	C	86807971	2	2	95	1	0	0	0	0	0	0	0	1	375	1567	55	5		5	AGBL1	15	86807971	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	11698995	86807971	15723421	704	95446											
C15orf42	90381	broad.mit.edu	37	chr15	90161343	90161343	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttaataagtgttaattacAagtggtatggagtaatcctt	8	5	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90161343	T	T	90161343	1	4	95	0	1	0	0	0	0	0	0	0	1809	145	5	5		5	C15orf42	15	90161343	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	3353372	90161343	12370049	705	95447											
CHTF18	63922	broad.mit.edu	37	chr16	844112	844112	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactcctgctgggtgacgggGacgcgggctccctcacctcc	13	17	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	844112	A	A	844112	3	1	95	1	0	0	0	0	1	0	0	0	3445	1174	41	4	1919	4	CHTF18	16	844112	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08		844112	89510641	706	95448											
ABCA3	21	broad.mit.edu	37	chr16	2333457	2333457	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaggctgctcaaggcGcctgtaacaatgtcccctcc	8	18	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2333457	A	A	2333457	1	1	95	0	1	0	0	0	0	0	0	0	33	1102	38	4		4	ABCA3	16	2333457	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1489345	2333457	88021296	707	95449											
GRIN2A	2903	broad.mit.edu	37	chr16	9857330	9857330	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcggaggtgtggtctggcaaGagagacttgctcctcttgct	14	9	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9857330	T	T	9857330	2	4	95	1	0	0	0	0	0	0	0	1	6845	929	33	3		3	GRIN2A	16	9857330	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	7523873	9857330	80497423	708	95450											
ZC3H7A	29066	broad.mit.edu	37	chr16	11846653	11846655	+	In_Frame_Del	DEL	GCA	-	-													tgccactgcttctcactgttGcagtttttcccacacatcca							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11846655	-	-	11846653	7	5	95	1	0	1	0	1	0	0	0	0	17698	1311	46	0	325	0	ZC3H7A	16	11846653	In_Frame_Del	DEL	GCA	TCGA-35-5375-01A-01D-1625-08	1989323	11846653	78508100	709	95451											
MYH11	4629	broad.mit.edu	37	chr16	15811192	15811192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctgtggccagctcgttgCtgagctgctcggcctgggga	16	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15811192	T	T	15811192	3	4	95	1	0	0	0	0	1	0	0	0	10125	797	28	4	660	4	MYH11	16	15811192	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3964539	15811192	74543561	710	95452											
ACSM2B	348158	broad.mit.edu	37	chr16	20548599	20548599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcactgcgcacgggcttttCcggacatcttccactccttg	8	16	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20548599	A	A	20548599	3	1	95	1	0	0	0	0	1	0	0	0	184	855	30	3	22	3	ACSM2B	16	20548599	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	4737407	20548599	69806154	711	95453											
PDZD9	255762	broad.mit.edu	37	chr16	21999804	21999804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaaattactctgacagtGtcaccagtcctcctgtcatg	8	12	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21999804	T	T	21999804	1	4	95	0	1	0	0	0	0	0	0	0	11800	1392	48	3		3	PDZD9	16	21999804	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1451205	21999804	68354949	712	95454											
CDR2	1039	broad.mit.edu	37	chr16	22358637	22358637	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggagatgcccctctgtttCacagccttggccctcctgat	10	14	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22358637	T	T	22358637	2	4	95	1	0	0	0	0	0	0	0	1	3202	813	29	4		4	CDR2	16	22358637	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	358833	22358637	67996116	713	95455											
ERN2	10595	broad.mit.edu	37	chr16	23721868	23721868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattggtccttcgatgacggGatctgcagggacagggacac	14	10	1	1	rs139404469		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23721868	T	T	23721868	3	4	95	1	0	0	0	0	1	0	0	0	5280	1174	41	3	2658	3	ERN2	16	23721868	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1363231	23721868	66632885	714	95456											
PRKCB	5579	broad.mit.edu	37	chr16	24202572	24202572	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaagtagcccattctctctGactgccgggtattcacacac	8	13	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24202572	T	T	24202572	1	4	95	0	1	0	0	0	0	0	0	0	12614	1305	45	3		3	PRKCB	16	24202572	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	480704	24202572	66152181	715	95457											
GTF3C1	2975	broad.mit.edu	37	chr16	27483258	27483258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtctgcaacacagggcggCgagggtgagtagggttctcc	16	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27483258	A	A	27483258	1	1	95	0	1	0	0	0	0	0	0	0	6937	783	27	3		3	GTF3C1	16	27483258	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3280686	27483258	62871495	716	95458											
TBC1D10B	26000	broad.mit.edu	37	chr16	30376830	30376830	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaccttctggaatcgccGtgacagccacttatcccagt	7	14	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30376830	A	A	30376830	3	1	95	1	0	0	0	0	1	0	0	0	15718	1144	40	4	1416	4	TBC1D10B	16	30376830	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2893572	30376830	59977923	717	95459											
ITGAL	3683	broad.mit.edu	37	chr16	30522496	30522496	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagccaaccctctcctcccAccgcagcctcccaacccagg	5	23	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30522496	C	C	30522496	1	2	95	0	1	0	0	0	0	0	0	0	7956	174	6	5		5	ITGAL	16	30522496	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	145666	30522496	59832257	718	95460											
PRR14	78994	broad.mit.edu	37	chr16	30664444	30664444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgggaactgagggtacGgatgtcaagggttctgctgg	18	5	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30664444	A	A	30664444	1	1	95	0	1	0	0	0	0	0	0	0	12692	1131	39	4		4	PRR14	16	30664444	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	141948	30664444	59690309	719	95461											
SRCAP	10847	broad.mit.edu	37	chr16	30712111	30712111	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataacaacccagtcattcTtcaggcatccaagggggagc	10	11	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30712111	G	G	30712111	1	3	95	0	1	0	0	0	0	0	0	0	15253	1624	56	5		5	SRCAP	16	30712111	5'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	47667	30712111	59642642	720	95462											
ITGAX	3687	broad.mit.edu	37	chr16	31371771	31371771	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcagcaggcatcatccGctatgcaattggggtagggc	14	9	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31371771	A	A	31371771	3	1	95	1	0	0	0	0	1	0	0	0	7959	1087	38	4	878	4	ITGAX	16	31371771	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	659660	31371771	58982982	721	95463											
VPS35	55737	broad.mit.edu	37	chr16	46712818	46712818	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaatcagatttcagtttatCtctgaacataagaagaggta	7	5	3	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46712818	G	G	46712818	1	3	95	0	1	0	0	0	0	0	0	0	17330	928	32	4		4	VPS35	16	46712818	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	15341047	46712818	43641935	722	95464											
ZNF423	23090	broad.mit.edu	37	chr16	49856567	49856581	+	Splice_Site	DEL	CCTCCCCTGCTCACC	-	-													ccccacccctcagcccaaggCctcccctgctcacccctctt							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49856581	-	-	49856567	8	5	95	1	0	1	0	1	0	0	1	0	18025	754	26	0		0	ZNF423	16	49856567	Splice_Site	DEL	CCTCCCCTGCTCACC	TCGA-35-5375-01A-01D-1625-08	3143749	49856567	40498186	723	95465											
SALL1	6299	broad.mit.edu	37	chr16	51174340	51174340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttcttgtggctgactcaGggcccccggagtcacttttg	13	11	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51174340	T	T	51174340	3	4	95	1	0	0	0	0	1	0	0	0	13921	1000	35	2	2189	2	SALL1	16	51174340	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1317773	51174340	39180413	724	95466											
GPR56	9289	broad.mit.edu	37	chr16	57697327	57697327	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagggatggggtggggctCccccacctgctgaccccgtg	17	13	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57697327	A	A	57697327	1	1	95	0	1	0	0	0	0	0	0	0	6765	870	30	3		3	GPR56	16	57697327	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	6522987	57697327	32657426	725	95467											
PRSS54	221191	broad.mit.edu	37	chr16	58318638	58318638	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgtctggaccatgcaAcagagagcccagggattatt	10	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58318638	G	G	58318638	1	3	95	0	1	0	0	0	0	0	0	0	12739	58	2	5		5	PRSS54	16	58318638	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	621311	58318638	32036115	726	95468											
CNOT1	23019	broad.mit.edu	37	chr16	58621300	58621300	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctgggcaaataagtgGggtgcaggctttaaactctg	13	8	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58621300	T	T	58621300	2	4	95	1	0	0	0	0	0	0	0	1	3649	1219	43	2		2	CNOT1	16	58621300	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	302662	58621300	31733453	727	95469											
CDH11	1009	broad.mit.edu	37	chr16	64981542	64981542	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgtctttggaaccataCaaatctgctagtttcttaaa	6	7	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64981542	G	G	64981542	3	3	95	1	0	0	0	0	1	0	0	0	3127	477	17	4	39	4	CDH11	16	64981542	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	6360242	64981542	25373211	728	95470											
CTCF	10664	broad.mit.edu	37	chr16	67660607	67660607	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgaccagtgtgattacGcttgtagacaggtaggaacc	13	7	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67660607	A	A	67660607	3	1	95	1	0	0	0	0	1	0	0	0	4034	1087	38	4	1529	4	CTCF	16	67660607	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2679065	67660607	22694146	729	95471											
CALB2	794	broad.mit.edu	37	chr16	71411557	71411557	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataacgttagtgtcgctctcTgtatcttcacagctggcgca	9	11	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71411557	G	G	71411557	1	3	95	0	1	0	0	0	0	0	0	0	2600	1595	55	5		5	CALB2	16	71411557	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	3750950	71411557	18943196	730	95472											
RFWD3	55159	broad.mit.edu	37	chr16	74664672	74664672	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaaaagagtgagtggcTccctacctggctttctgagc	12	11	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74664672	C	C	74664672	1	2	95	0	1	0	0	0	0	0	0	0	13369	1566	54	5		5	RFWD3	16	74664672	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	3253115	74664672	15690081	731	95473											
PLCG2	5336	broad.mit.edu	37	chr16	81953109	81953109	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctaggggcaaggtaaagcAttgtcgcatcaaccgggacg	15	9	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81953109	G	G	81953109	3	3	95	1	0	0	0	0	1	0	0	0	12131	217	8	5	2149	5	PLCG2	16	81953109	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	7288437	81953109	8401644	732	95474											
NECAB2	54550	broad.mit.edu	37	chr16	84014588	84014588	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcaggagtgctgagtgGgaggggcaggacctgtgacc	20	7	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84014588	A	A	84014588	1	1	95	0	1	0	0	0	0	0	0	0	10400	1247	43	4		4	NECAB2	16	84014588	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2061479	84014588	6340165	733	95475											
ZC3H18	124245	broad.mit.edu	37	chr16	88694395	88694395	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gattcgtccacacaaccaccCaaatctgcaaaacctccagc	4	17	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88694395	G	G	88694395	2	3	95	1	0	0	0	0	0	0	0	1	17694	581	21	4		4	ZC3H18	16	88694395	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	4679807	88694395	1660358	734	95476											
CPNE7	27132	broad.mit.edu	37	chr16	89661664	89661665	+	Intron	DNP	GG	TT	TT													acactctgaaggcggttctaGgaagctctgacgcacggagg							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	89661665	TT	TT	89661664	1	4	95	0	1	0	0	0	0	0	0	0	3849	1015	35	2		2	CPNE7	16	89661664	Intron	DNP	GG	TCGA-35-5375-01A-01D-1625-08	967269	89661664	693089	735	95477											
NXN	64359	broad.mit.edu	37	chr17	706870	706870	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggccaggatcagtcctgtgCcagaagtcccagctgagcca	13	13	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	706870	G	G	706870	1	3	95	0	1	0	0	0	0	0	0	0	10882	754	26	4		4	NXN	17	706870	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08		706870	80488340	736	95478											
POLR2A	5430	broad.mit.edu	37	chr17	7402375	7402375	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtggaacggcacatgtgTgatggggacattgttatctt	14	5	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7402375	C	C	7402375	2	2	95	1	0	0	0	0	0	0	0	1	12309	1702	59	5		5	POLR2A	17	7402375	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	6695505	7402375	73792835	737	95479											
TP53	7157	broad.mit.edu	37	chr17	7577559	7577559	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggttcatgccgcccatgcagGaactgttacacatgtagttg	11	10	1	0	rs28934573		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577559	A	A	7577559	3	1	95	1	0	0	0	0	1	0	0	0	16505	1174	41	4	568	4	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	175184	7577559	73617651	738	95480											
KDM6B	23135	broad.mit.edu	37	chr17	7752487	7752487	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccccgcacaggccaaggagGaggctggcggggtggcggca	19	13	0	0	rs71371820		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7752487	A	A	7752487	3	1	95	1	0	0	0	0	1	0	0	0	8208	1175	41	4	2911	4	KDM6B	17	7752487	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	174928	7752487	73442723	739	95481			1	74		8	7	828	N	G	3.201492e-13
KDM6B	23135	broad.mit.edu	37	chr17	7752588	7752588	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggcctgtaaggacagtgtGggtcgtcggccccgtgaggg	19	10	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7752588	C	C	7752588	2	2	95	1	0	0	0	0	0	0	0	1	8208	1335	47	4		4	KDM6B	17	7752588	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	101	7752588	73442622	740	95482			1	74		8	7	828	N	G	3.201492e-13
KDM6B	23135	broad.mit.edu	37	chr17	7752684	7752684	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctggacctgcagagcgaGgagatccagggtcgtgagaa	15	9	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7752684	A	A	7752684	2	1	95	1	0	0	0	0	0	0	0	1	8208	991	35	4		4	KDM6B	17	7752684	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	96	7752684	73442526	741	95483			1	74		8	7	828	N	G	3.201492e-13
KDM6B	23135	broad.mit.edu	37	chr17	7752915	7752915	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggggccccccaaggagctGaagatccggctcatcaaggt	14	12	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7752915	C	C	7752915	2	2	95	1	0	0	0	0	0	0	0	1	8208	1277	45	4		4	KDM6B	17	7752915	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	231	7752915	73442295	742	95484			1	74		8	7	828	N	G	3.201492e-13
KDM6B	23135	broad.mit.edu	37	chr17	7753196	7753196	+	Silent	SNP	G	A	A													ctttcccctgcccagtctgtGaaaccgaagatcaacactga							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7753196	A	A	7753196	2	1	95	1	0	0	0	0	0	0	0	1	8208	1277	45	4		4	KDM6B	17	7753196	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	281	7753196	73442014	743	95485	422	2	1	74		8	7	828	N	G	3.201492e-13
KDM6B	23135	broad.mit.edu	37	chr17	7753205	7753205	+	Missense_Mutation	SNP	G	T	T													gcccagtctgtgaaaccgaaGatcaacactgaggagaagct							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7753205	T	T	7753205	3	4	95	1	0	0	0	0	1	0	0	0	8208	933	33	3	3541	3	KDM6B	17	7753205	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	9	7753205	73442005	744	95486	422	2	1	74		8	7	828	N	G	3.201492e-13
KDM6B	23135	broad.mit.edu	37	chr17	7753218	7753218	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaccgaagatcaacactgagGagaagctgccccgggaaaaa	11	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7753218	C	C	7753218	3	2	95	1	0	0	0	0	1	0	0	0	8208	1175	41	4	3554	4	KDM6B	17	7753218	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	13	7753218	73441992	745	95487			1	74		8	7	828	N	G	3.201492e-13
KDM6B	23135	broad.mit.edu	37	chr17	7753314	7753314	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccctgccagagggttctaaGacagtgttggggactgctgg	15	10	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7753314	C	C	7753314	1	2	95	0	1	0	0	0	0	0	0	0	8208	957	33	4		4	KDM6B	17	7753314	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	96	7753314	73441896	746	95488			1	74		8	7	828	N	G	3.201492e-13
MYH4	4622	broad.mit.edu	37	chr17	10366498	10366498	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaactcgggacttctcTagcagatctggaagtcagat	10	8	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10366498	C	C	10366498	2	2	95	1	0	0	0	0	0	0	0	1	10131	1509	53	5		5	MYH4	17	10366498	Silent	SNP	T	TCGA-35-5375-01A-01D-1625-08	2613184	10366498	70828712	747	95489											
ZNF18	7566	broad.mit.edu	37	chr17	11881705	11881705	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acactccctgcaggtggggaGcttctgggccatgggggctc	16	12	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11881705	C	C	11881705	3	2	95	1	0	0	0	0	1	0	0	0	17873	971	34	4	434	4	ZNF18	17	11881705	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1515207	11881705	69313505	748	95490											
TTC19	54902	broad.mit.edu	37	chr17	15928530	15928530	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaatataaaacaaaggcttCaaaattgaagggtgtgaaat	10	3	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928530	T	T	15928530	1	4	95	0	1	0	0	0	0	0	0	0	16812	841	29	4		4	TTC19	17	15928530	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4046825	15928530	65266680	749	95491											
ZNF624	57547	broad.mit.edu	37	chr17	16525829	16525829	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagggttagctgtgatagagTaatacaaccctttccacatt	8	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16525829	C	C	16525829	3	2	95	1	0	0	0	0	1	0	0	0	18175	1638	57	5	230	5	ZNF624	17	16525829	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	597299	16525829	64669381	750	95492											
MYO15A	51168	broad.mit.edu	37	chr17	18030044	18030044	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatacggatgctccctgcccAatccctgggaggtgtgggag	15	11	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18030044	T	T	18030044	1	4	95	0	1	0	0	0	0	0	0	0	10157	145	5	5		5	MYO15A	17	18030044	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1504215	18030044	63165166	751	95493											
EPN2	22905	broad.mit.edu	37	chr17	19213203	19213203	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttccccaacagccaccTccccgcgagtgtcctccgag	9	19	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19213203	A	A	19213203	3	1	95	1	0	0	0	0	1	0	0	0	5228	1551	54	5	782	5	EPN2	17	19213203	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	1183159	19213203	61982007	752	95494											
MAP2K3	5606	broad.mit.edu	37	chr17	21208257	21208257	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcctcccccgtcacatgGgcaggtgggctaagctgagc	13	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21208257	A	A	21208257	1	1	95	0	1	0	0	0	0	0	0	0	9330	1247	43	4		4	MAP2K3	17	21208257	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1995054	21208257	59986953	753	95495											
SARM1	23098	broad.mit.edu	37	chr17	26687997	26687997	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgccattaataaggggagcAttagagctttccagcagtca	10	8	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26687997	G	G	26687997	1	3	95	0	1	0	0	0	0	0	0	0	13954	232	8	5		5	SARM1	17	26687997	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	5479740	26687997	54507213	754	95496											
MYO18A	399687	broad.mit.edu	37	chr17	27438885	27438885	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggccagcgagcggacctaCagagaaggaaggaaatccct	14	11	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27438885	G	G	27438885	1	3	95	0	1	0	0	0	0	0	0	0	10159	493	17	4		4	MYO18A	17	27438885	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	750888	27438885	53756325	755	95497											
SPACA3	124912	broad.mit.edu	37	chr17	31323984	31323984	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgcagcaacctcacccCgaacgtccccaacgtgtgcc	10	17	1	0	rs143361724	byFrequency	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323984	T	T	31323984	3	4	95	1	0	0	0	0	1	0	0	0	15087	652	23	4	477	4	SPACA3	17	31323984	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	3885099	31323984	49871226	756	95498											
CCL14	6358	broad.mit.edu	37	chr17	34311470	34311470	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaggtgaagcagcactctGaggggtggtaaggtccccct	15	9	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34311470	A	A	34311470	3	1	95	1	0	0	0	0	1	0	0	0	2913	1294	45	4	191	4	CCL14	17	34311470	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2987486	34311470	46883740	757	95499											
MRM1	79922	broad.mit.edu	37	chr17	34958194	34958194	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcggcgcgggttaccgctcCcggggacgcagcaaggggca	18	13	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34958194	T	T	34958194	1	4	95	0	1	0	0	0	0	0	0	0	9865	638	22	4		4	MRM1	17	34958194	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	646724	34958194	46237016	758	95500											
TNS4	84951	broad.mit.edu	37	chr17	38643789	38643789	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcaggctccggatctggtGatctgggttcccatggcttt	13	10	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38643789	C	C	38643789	1	2	95	0	1	0	0	0	0	0	0	0	16468	1305	45	4		4	TNS4	17	38643789	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3685595	38643789	42551421	759	95501											
CCR7	1236	broad.mit.edu	37	chr17	38710799	38710799	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttagcttatcagccctgtcTttttttggcattggttgagg	11	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38710799	C	C	38710799	1	2	95	0	1	0	0	0	0	0	0	0	2976	1624	56	5		5	CCR7	17	38710799	3'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	67010	38710799	42484411	760	95502											
SMARCE1	6605	broad.mit.edu	37	chr17	38787077	38787077	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcagcttgctctgcggcctCcttctccctttcctcctgcc	6	20	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38787077	G	G	38787077	3	3	95	1	0	0	0	0	1	0	0	0	14894	864	30	4	327	4	SMARCE1	17	38787077	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	76278	38787077	42408133	761	95503											
KRT24	192666	broad.mit.edu	37	chr17	38855764	38855764	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcgtgtcttgatgtccagCaattgcttgtactctgcgtt	11	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38855764	G	G	38855764	3	3	95	1	0	0	0	0	1	0	0	0	8532	709	25	4	296	4	KRT24	17	38855764	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	68687	38855764	42339446	762	95504											
KRT25	147183	broad.mit.edu	37	chr17	38907347	38907347	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgctctgaaatgacataagTgaaggagcaaatcttagttt	10	6	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38907347	C	C	38907347	1	2	95	0	1	0	0	0	0	0	0	0	8533	1711	59	5		5	KRT25	17	38907347	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	51583	38907347	42287863	763	95505											
PLEKHH3	79990	broad.mit.edu	37	chr17	40826062	40826062	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggagggaaggttgggtctCcactctgcctctagggggct	18	9	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40826062	T	T	40826062	1	4	95	0	1	0	0	0	0	0	0	0	12173	870	30	4		4	PLEKHH3	17	40826062	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1918715	40826062	40369148	764	95506											
PSME3	10197	broad.mit.edu	37	chr17	40991043	40991043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctaggtagggctgcttgGgcttggccgaggcgttgggg	19	7	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40991043	T	T	40991043	1	4	95	0	1	0	0	0	0	0	0	0	12814	1247	43	2		2	PSME3	17	40991043	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	164981	40991043	40204167	765	95507											
AOC3	8639	broad.mit.edu	37	chr17	41004383	41004383	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggactttctcctttggcctCggagcattcagtggcccaag	11	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41004383	T	T	41004383	2	4	95	1	0	0	0	0	0	0	0	1	730	871	31	4		4	AOC3	17	41004383	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	13340	41004383	40190827	766	95508											
PLEKHM1	9842	broad.mit.edu	37	chr17	43552468	43552468	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggggcagcgtactcactcTtgcagagaccggtctgagtc	14	11	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43552468	A	A	43552468	3	1	95	1	0	0	0	0	1	0	0	0	12175	1606	56	5	2285	5	PLEKHM1	17	43552468	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2548085	43552468	37642742	767	95509											
SKAP1	8631	broad.mit.edu	37	chr17	46239860	46239860	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacggatgaggtcaccccGttggaaggacagttcatctg	12	9	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46239860	T	T	46239860	2	4	95	1	0	0	0	0	0	0	0	1	14468	1144	40	3		3	SKAP1	17	46239860	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	2687392	46239860	34955350	768	95510											
HOXB1	3211	broad.mit.edu	37	chr17	46607742	46607742	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcgaaggtccgggccgtGggggtgttaggttctgaagg	19	7	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46607742	C	C	46607742	2	2	95	1	0	0	0	0	0	0	0	1	7366	1335	47	4		4	HOXB1	17	46607742	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	367882	46607742	34587468	769	95511											
SNF8	11267	broad.mit.edu	37	chr17	47014565	47014565	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaacctgcattaaaacatCtatcatatgggaagtcttcc	5	10	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47014565	T	T	47014565	1	4	95	0	1	0	0	0	0	0	0	0	14960	928	32	4		4	SNF8	17	47014565	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	406823	47014565	34180645	770	95512											
SPOP	8405	broad.mit.edu	37	chr17	47696724	47696725	+	Missense_Mutation	DNP	CC	AA	AA													ctttgctttcttcatctaacCctttggggtttactcgcaaa							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47696725	AA	AA	47696724	3	1	95	1	0	0	0	0	1	0	0	0	15202	623	22	2	928	2	SPOP	17	47696724	Missense_Mutation	DNP	CC	TCGA-35-5375-01A-01D-1625-08	682159	47696724	33498486	771	95513											
COL1A1	1277	broad.mit.edu	37	chr17	48268099	48268099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggacctgctctcccaaCgcaaccccacggaaccgtgc	10	18	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48268099	A	A	48268099	1	1	95	0	1	0	0	0	0	0	0	0	3709	551	19	3		3	COL1A1	17	48268099	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	571375	48268099	32927111	772	95514											
ANKRD40	91369	broad.mit.edu	37	chr17	48773313	48773313	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtccttggcccagaggTgatgcacactgtcataatac	10	11	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48773313	G	G	48773313	1	3	95	0	1	0	0	0	0	0	0	0	669	1711	59	5		5	ANKRD40	17	48773313	3'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	505214	48773313	32421897	773	95515											
ANKFN1	162282	broad.mit.edu	37	chr17	54526374	54526374	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaactccggctcctgaCgcagggcaaggaagaggcct	13	12	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54526374	G	G	54526374	1	3	95	0	1	0	0	0	0	0	0	0	625	551	19	4		4	ANKFN1	17	54526374	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	5753061	54526374	26668836	774	95516											
ANKFN1	162282	broad.mit.edu	37	chr17	54555015	54555015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaacaataatatttctaGgtaagtgatcaggagttaag	9	3	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54555015	T	T	54555015	3	4	95	1	0	0	0	0	1	0	0	0	625	1014	35	2	2007	2	ANKFN1	17	54555015	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	28641	54555015	26640195	775	95517											
DGKE	8526	broad.mit.edu	37	chr17	54936095	54936095	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attatgaagactttttaaacAgaaatgctaaactttgttaa	5	4	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54936095	C	C	54936095	1	2	95	0	1	0	0	0	0	0	0	0	4508	203	7	5		5	DGKE	17	54936095	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	381080	54936095	26259115	776	95518											
BZRAP1	9256	broad.mit.edu	37	chr17	56383181	56383181	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cccagcctcccgggcccaggGatattccttcacctggacag	10	17	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56383181	C	C	56383181	1	2	95	0	1	0	0	0	0	0	0	0	1587	1189	41	4		4	BZRAP1	17	56383181	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1447086	56383181	24812029	777	95519											
HEATR6	63897	broad.mit.edu	37	chr17	58150682	58150682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtcaaagaaaagcttcTaggaaaatattatgttttag	9	3	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58150682	C	C	58150682	1	2	95	0	1	0	0	0	0	0	0	0	7100	1537	53	5		5	HEATR6	17	58150682	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1767501	58150682	23044528	778	95520											
USP32	84669	broad.mit.edu	37	chr17	58343473	58343473	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgaaaagaaactcttaTggaggaaaatcatttttgta	7	4	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58343473	C	C	58343473	1	2	95	0	1	0	0	0	0	0	0	0	17190	1479	51	5		5	USP32	17	58343473	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	192791	58343473	22851737	779	95521											
BRIP1	83990	broad.mit.edu	37	chr17	59934404	59934404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatatcaactgacccaggCaaaatataaattaccttgac	5	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59934404	A	A	59934404	1	1	95	0	1	0	0	0	0	0	0	0	1523	725	25	3		3	BRIP1	17	59934404	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1590931	59934404	21260806	780	95522											
DDX5	1655	broad.mit.edu	37	chr17	62499732	62499732	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcacaaacctggatactaGttttaaactgctaacttatt	5	9	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62499732	C	C	62499732	1	2	95	0	1	0	0	0	0	0	0	0	4400	1044	36	4		4	DDX5	17	62499732	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	2565328	62499732	18695478	781	95523											
LRRC37A3	374819	broad.mit.edu	37	chr17	62856473	62856473	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctcacctgtggtaggGcttttgcagggctggaggta	15	8	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62856473	A	A	62856473	3	1	95	1	0	0	0	0	1	0	0	0	9080	1203	42	4	1129	4	LRRC37A3	17	62856473	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	356741	62856473	18338737	782	95524											
PSMD12	5718	broad.mit.edu	37	chr17	65362551	65362551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctagcttcgcacactcggGtaggcgctgatccaccgtgg	14	13	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65362551	T	T	65362551	3	4	95	1	0	0	0	0	1	0	0	0	12801	1261	44	3	1329	3	PSMD12	17	65362551	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2506078	65362551	15832659	783	95525											
ABCA6	23460	broad.mit.edu	37	chr17	67114072	67114072	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttttccagattttccttTatattccttcttaacatttc	1	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67114072	G	G	67114072	3	3	95	1	0	0	0	0	1	0	0	0	36	1763	61	5	3507	5	ABCA6	17	67114072	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	1751521	67114072	14081138	784	95526											
SDK2	54549	broad.mit.edu	37	chr17	71412116	71412116	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactggtaccccacgggcagCccggccaggcagtacctgag	13	15	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71412116	T	T	71412116	2	4	95	1	0	0	0	0	0	0	0	1	14082	726	26	4		4	SDK2	17	71412116	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	4298044	71412116	9783094	785	95527											
CD300LB	124599	broad.mit.edu	37	chr17	72519862	72519862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggtcacaaagccacgCgaccctgccagccctcacca	9	18	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72519862	A	A	72519862	1	1	95	0	1	0	0	0	0	0	0	0	3029	783	27	3		3	CD300LB	17	72519862	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1107746	72519862	8675348	786	95528											
GALK1	2584	broad.mit.edu	37	chr17	73759375	73759375	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcagggaaggagggctgGgtcagggctggggcctagct	19	9	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73759375	A	A	73759375	1	1	95	0	1	0	0	0	0	0	0	0	6265	1247	43	4		4	GALK1	17	73759375	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1239513	73759375	7435835	787	95529											
LGALS3BP	3959	broad.mit.edu	37	chr17	76968265	76968265	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaactggaagggcacagtgTggaattccagggcctgcaga	15	9	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76968265	A	A	76968265	3	1	95	1	0	0	0	0	1	0	0	0	8816	1696	59	5	610	5	LGALS3BP	17	76968265	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	3208890	76968265	4226945	788	95530											
LGALS3BP	3959	broad.mit.edu	37	chr17	76970962	76970962	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacccaggagtcccacagCgcgactcagccctttgttct	9	16	2	0	rs140005844	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76970962	T	T	76970962	1	4	95	0	1	0	0	0	0	0	0	0	8816	783	27	4		4	LGALS3BP	17	76970962	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	2697	76970962	4224248	789	95531											
ENPP7	339221	broad.mit.edu	37	chr17	77705081	77705081	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggacgccatggcccgagaCggggtgaaggcacgctacat	15	12	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77705081	T	T	77705081	2	4	95	1	0	0	0	0	0	0	0	1	5177	535	19	4		4	ENPP7	17	77705081	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	734119	77705081	3490129	790	95532											
RPTOR	57521	broad.mit.edu	37	chr17	78882417	78882417	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagatgaatccatgtgatcAagcctagtgatcagctagga	11	7	2	4	rs78073796	by1000genomes	TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78882417	T	T	78882417	1	4	95	0	1	0	0	0	0	0	0	0	13776	145	5	5		5	RPTOR	17	78882417	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1177336	78882417	2312793	791	95533											
TBCD	6904	broad.mit.edu	37	chr17	80879532	80879532	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatggtgtttgtgttggcgActgtgcatcatgaggctgtc	16	6	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80879532	G	G	80879532	1	3	95	0	1	0	0	0	0	0	0	0	15755	290	10	5		5	TBCD	17	80879532	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	1997115	80879532	315678	792	95534											
ENOSF1	55556	broad.mit.edu	37	chr18	678552	678552	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactctagactctgataaaaTgacccagtttctaagatgat	7	8	3	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	678552	C	C	678552	1	2	95	0	1	0	0	0	0	0	0	0	5167	1479	51	5		5	ENOSF1	18	678552	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08		678552	77398696	793	95535											
LAMA1	284217	broad.mit.edu	37	chr18	7080458	7080458	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatggcaggaaacaggccTgaaagtgaaaatttaccaaa	10	6	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7080458	C	C	7080458	5	2	95	1	0	0	0	0	0	0	1	0	8677	1594	55	5	9415	5	LAMA1	18	7080458	Splice_Site	SNP	T	TCGA-35-5375-01A-01D-1625-08	6401906	7080458	70996790	794	95536											
CIDEA	1149	broad.mit.edu	37	chr18	12254358	12254358	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgcaggcagacagacctCcaggcccgctaggggatccg	14	14	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12254358	A	A	12254358	1	1	95	0	1	0	0	0	0	0	0	0	3456	870	30	3		3	CIDEA	18	12254358	5'UTR	SNP	C	TCGA-35-5375-01A-01D-1625-08	5173900	12254358	65822890	795	95537											
C18orf1	753	broad.mit.edu	37	chr18	13438175	13438176	+	Intron	DNP	CG	AT	AT													atgggggaaagaaaaaccaaCgacagtcacagctcaagagc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	13438176	AT	AT	13438175	1	1	95	0	1	0	0	0	0	0	0	0	1912	551	19	3		3	C18orf1	18	13438175	Intron	DNP	CG	TCGA-35-5375-01A-01D-1625-08	1183817	13438175	64639073	796	95538											
C18orf19	125228	broad.mit.edu	37	chr18	13666739	13666739	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagcaaacagaggcaaAtcaaaacctggttattactg	7	8	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13666739	G	G	13666739	1	3	95	0	1	0	0	0	0	0	0	0	1914	116	4	5		5	C18orf19	18	13666739	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	228564	13666739	64410509	797	95539											
DSG4	147409	broad.mit.edu	37	chr18	28993162	28993162	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggatattattgtgactgaGacttacggtaatgctgatcc	12	6	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28993162	C	C	28993162	3	2	95	1	0	0	0	0	1	0	0	0	4819	933	33	4	2910	4	DSG4	18	28993162	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	15326423	28993162	49084086	798	95540											
C18orf34	374864	broad.mit.edu	37	chr18	30992034	30992034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagtggaagaagaggaaaCtgtcttgttttcagtcatag	11	5	4	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30992034	A	A	30992034	3	1	95	1	0	0	0	0	1	0	0	0	1920	565	20	3	2668	3	C18orf34	18	30992034	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1998872	30992034	47085214	799	95541											
DTNA	1837	broad.mit.edu	37	chr18	32391994	32391994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaccaattccttcgggaaGttctcaaactacccacggca	7	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32391994	T	T	32391994	3	4	95	1	0	0	0	0	1	0	0	0	4828	1029	36	3	538	3	DTNA	18	32391994	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1399960	32391994	45685254	800	95542											
TCEB3B	51224	broad.mit.edu	37	chr18	44559841	44559841	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctccaagttttgttttcctGtggcttttcttccttgaagt	7	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44559841	C	C	44559841	3	2	95	1	0	0	0	0	1	0	0	0	15804	1386	48	4	470	4	TCEB3B	18	44559841	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	12167847	44559841	33517407	801	95543											
DCC	1630	broad.mit.edu	37	chr18	51025876	51025876	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacacaccacttttgtctcaGccaggtaaagtactcggttg	8	11	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51025876	A	A	51025876	2	1	95	1	0	0	0	0	0	0	0	1	4315	962	34	4		4	DCC	18	51025876	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	6466035	51025876	27051372	802	95544											
POLI	11201	broad.mit.edu	37	chr18	51820115	51820115	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaaagtacaagaactaggGagtctccactagataccaca	8	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51820115	T	T	51820115	4	4	95	1	0	0	0	0	0	1	0	0	12298	1175	41	3	1539	3	POLI	18	51820115	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	794239	51820115	26257133	803	95545											
SERPINB12	89777	broad.mit.edu	37	chr18	61223420	61223420	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgttacagcaaacaccAaattttgctttgatcttttt	4	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61223420	G	G	61223420	3	3	95	1	0	0	0	0	1	0	0	0	14212	131	5	5	30	5	SERPINB12	18	61223420	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	9403305	61223420	16853828	804	95546											
SERPINB3	6317	broad.mit.edu	37	chr18	61325701	61325701	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcaggcatagggctcactCgcatagatttctcaaaggtg	10	9	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61325701	A	A	61325701	1	1	95	0	1	0	0	0	0	0	0	0	14215	899	31	3		3	SERPINB3	18	61325701	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	102281	61325701	16751547	805	95547											
PQLC1	80148	broad.mit.edu	37	chr18	77693994	77693994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaccgcctgggggcaacCttgacttcttcatccttgct	10	13	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77693994	A	A	77693994	3	1	95	1	0	0	0	0	1	0	0	0	12519	680	24	2	461	2	PQLC1	18	77693994	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	16368293	77693994	383254	806	95548											
POLR2E	5434	broad.mit.edu	37	chr19	1095300	1095300	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagagccggtacgtctcCtcctcgtcgtccatggcagc	10	16	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1095300	T	T	1095300	2	4	95	1	0	0	0	0	0	0	0	1	12313	680	24	4		4	POLR2E	19	1095300	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08		1095300	58033683	807	95549											
MPND	84954	broad.mit.edu	37	chr19	4355070	4355070	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggaccggggtcacggGgtcacagctgcccctcccca	14	15	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4355070	A	A	4355070	1	1	95	0	1	0	0	0	0	0	0	0	9825	1247	43	4		4	MPND	19	4355070	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	3259770	4355070	54773913	808	95550											
CCL25	6370	broad.mit.edu	37	chr19	8121327	8121327	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagagagccatgaagctccTggatgctcgaaataaggttt	12	8	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8121327	A	A	8121327	3	1	95	1	0	0	0	0	1	0	0	0	2925	1580	55	5	279	5	CCL25	19	8121327	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	3766257	8121327	51007656	809	95551											
RAVER1	125950	broad.mit.edu	37	chr19	10433905	10433905	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggttgttgagcagctGcaggatgttgggctcgggga	18	8	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10433905	A	A	10433905	4	1	95	1	0	0	0	0	0	1	0	0	13202	1328	46	4	1261	4	RAVER1	19	10433905	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2312578	10433905	48695078	810	95552											
KEAP1	9817	broad.mit.edu	37	chr19	10597426	10597426	+	Frame_Shift_Del	DEL	C	-	-													cgatgtcattcgggtcacctCgctccaggtgtctgtatctg							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10597426	-	-	10597426	7	5	95	1	0	1	0	1	0	0	0	0	8211	893	31	0	101	0	KEAP1	19	10597426	Frame_Shift_Del	DEL	C	TCGA-35-5375-01A-01D-1625-08	163521	10597426	48531557	811	95553											
SMARCA4	6597	broad.mit.edu	37	chr19	11170531	11170531	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagagtgaggaggaggaaGagggcgaggaggaaggctcc	22	4	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11170531	T	T	11170531	4	4	95	1	0	0	0	0	0	1	0	0	14884	943	33	3	4973	3	SMARCA4	19	11170531	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	573105	11170531	47958452	812	95554											
LDLR	3949	broad.mit.edu	37	chr19	11200278	11200279	+	Missense_Mutation	DNP	GG	CC	CC													gtcgccttgctcctcgccgcGgcggggactgcaggtaaggc							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	11200279	CC	CC	11200278	3	2	95	1	0	0	0	0	1	0	0	0	8776	1103	39	4	56	4	LDLR	19	11200278	Missense_Mutation	DNP	GG	TCGA-35-5375-01A-01D-1625-08	29747	11200278	47928705	813	95555											
RTBDN	83546	broad.mit.edu	37	chr19	12939665	12939665	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtacgcgagaaaacggtGgagggtgctgtactcactca	13	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12939665	A	A	12939665	1	1	95	0	1	0	0	0	0	0	0	0	13828	1363	47	4		4	RTBDN	19	12939665	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1739387	12939665	46189318	814	95556											
C19orf53	28974	broad.mit.edu	37	chr19	13885476	13885476	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttccccaggtcgtgttatCgctcccaagaaggcgcgcgt	11	14	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13885476	T	T	13885476	2	4	95	1	0	0	0	0	0	0	0	1	1954	874	31	4		4	C19orf53	19	13885476	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	945811	13885476	45243507	815	95557											
CYP4F3	4051	broad.mit.edu	37	chr19	15760829	15760829	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctgtattatctcacccctGatgggcagcgtttccgcagg	10	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15760829	T	T	15760829	3	4	95	1	0	0	0	0	1	0	0	0	4223	1290	45	3	776	3	CYP4F3	19	15760829	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1875353	15760829	43368154	816	95558											
CYP4F3	4051	broad.mit.edu	37	chr19	15769235	15769235	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcctcagggggaggagcctCctgggtaggaagaggggccc	19	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15769235	T	T	15769235	1	4	95	0	1	0	0	0	0	0	0	0	4223	870	30	4		4	CYP4F3	19	15769235	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	8406	15769235	43359748	817	95559											
CYP4F2	8529	broad.mit.edu	37	chr19	16004734	16004734	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caattcatgctctcctaggcTgtgagagagaaggatctgca	11	9	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16004734	A	A	16004734	1	1	95	0	1	0	0	0	0	0	0	0	4221	1595	55	5		5	CYP4F2	19	16004734	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	235499	16004734	43124249	818	95560											
FAM129C	199786	broad.mit.edu	37	chr19	17641781	17641781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgcttccaacctcagacCtttgccattgccataggatg	7	14	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17641781	A	A	17641781	1	1	95	0	1	0	0	0	0	0	0	0	5484	696	24	2		2	FAM129C	19	17641781	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1637047	17641781	41487202	819	95561											
GLT25D1	79709	broad.mit.edu	37	chr19	17688707	17688707	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggtggtggaatggccgggGatggcagaatggcaggcagg	23	5	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17688707	A	A	17688707	1	1	95	0	1	0	0	0	0	0	0	0	6530	1189	41	4		4	GLT25D1	19	17688707	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	46926	17688707	41440276	820	95562											
JAK3	3718	broad.mit.edu	37	chr19	17949156	17949156	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgaaccaaggatgatgtGggtgggctgtgacctctctg	16	8	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17949156	A	A	17949156	2	1	95	1	0	0	0	0	0	0	0	1	8009	1335	47	4		4	JAK3	19	17949156	Silent	SNP	G	TCGA-35-5375-01A-01D-1625-08	260449	17949156	41179827	821	95563											
NDUFA13	51079	broad.mit.edu	37	chr19	19646177	19646177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccatcttctaccccacacGctcgctggacctgctgcatc	6	19	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19646177	A	A	19646177	3	1	95	1	0	0	0	0	1	0	0	0	10358	1087	38	4		4	NDUFA13	19	19646177	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1697021	19646177	39482806	822	95564											
CILP2	148113	broad.mit.edu	37	chr19	19655656	19655656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggtcaatctggagcccGcccccggcttctccgccaac	10	19	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19655656	T	T	19655656	3	4	95	1	0	0	0	0	1	0	0	0	3461	1087	38	3	2332	3	CILP2	19	19655656	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	9479	19655656	39473327	823	95565											
ZNF208	7757	broad.mit.edu	37	chr19	22154536	22154536	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaattctcttatgttccatAaggtttgaggaccagttgaa	9	6	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22154536	T	T	22154536	2	4	95	1	0	0	0	0	0	0	0	1	17892	349	13	5		5	ZNF208	19	22154536	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	2498880	22154536	36974447	824	95566											
SLC7A10	56301	broad.mit.edu	37	chr19	33702100	33702100	+	Intron	DEL	C	-	-													cctgcaccccagccttccctCcccatgcccacgtctcccca							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33702100	-	-	33702100	6	5	95	0	1	1	0	1	0	0	0	0	14807	870	30	0		0	SLC7A10	19	33702100	Intron	DEL	C	TCGA-35-5375-01A-01D-1625-08	11547564	33702100	25426883	825	95567											
ZNF566	84924	broad.mit.edu	37	chr19	36963700	36963700	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagctcatgtagaaaaggtCttacatttgcacaacaggcc	8	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36963700	A	A	36963700	1	1	95	0	1	0	0	0	0	0	0	0	18124	928	32	3		3	ZNF566	19	36963700	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	3261600	36963700	22165283	826	95568											
ZNF566	84924	broad.mit.edu	37	chr19	36963803	36963803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacgcattacctgctgtgCctcacttacctggccactgg	8	15	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36963803	A	A	36963803	1	1	95	0	1	0	0	0	0	0	0	0	18124	754	26	3		3	ZNF566	19	36963803	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	103	36963803	22165180	827	95569											
ZNF382	84911	broad.mit.edu	37	chr19	37117262	37117262	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactagtcattagaaatataAgccccataaaagagaagttt	6	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37117262	G	G	37117262	3	3	95	1	0	0	0	0	1	0	0	0	17999	72	3	5	473	5	ZNF382	19	37117262	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	153459	37117262	22011721	828	95570											
ZNF573	126231	broad.mit.edu	37	chr19	38230451	38230451	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtacagtaagctggtgacCtcttctaaaggcctttccac	8	11	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38230451	G	G	38230451	3	3	95	1	0	0	0	0	1	0	0	0	18132	681	24	4	1061	4	ZNF573	19	38230451	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1113189	38230451	20898532	829	95571											
SUPT5H	6829	broad.mit.edu	37	chr19	39967129	39967129	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaagatcctcctgcaggGctaggcggattgttctggat	12	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39967129	T	T	39967129	1	4	95	0	1	0	0	0	0	0	0	0	15517	1218	42	3		3	SUPT5H	19	39967129	3'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	1736678	39967129	19161854	830	95572											
SHKBP1	92799	broad.mit.edu	37	chr19	41083072	41083072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaccctggatcctgcgGgagggggacgcattcctcac	15	12	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41083072	T	T	41083072	1	4	95	0	1	0	0	0	0	0	0	0	14397	1247	43	2		2	SHKBP1	19	41083072	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1115943	41083072	18045911	831	95573											
IRGC	56269	broad.mit.edu	37	chr19	44223928	44223928	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcatcaaggccctggaggaTgacgagccgcagccggaggt	16	12	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44223928	A	A	44223928	3	1	95	1	0	0	0	0	1	0	0	0	7908	1461	51	5	1220	5	IRGC	19	44223928	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	3140856	44223928	14905055	832	95574											
ZNF235	9310	broad.mit.edu	37	chr19	44792868	44792868	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagggtatctttaccacaAtcactattgctatgaacttt	5	8	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44792868	G	G	44792868	2	3	95	1	0	0	0	0	0	0	0	1	17914	98	4	5		5	ZNF235	19	44792868	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	568940	44792868	14336115	833	95575											
CBLC	23624	broad.mit.edu	37	chr19	45303666	45303666	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggggaactcccctccagCtgcgctgggaccccaggacc	12	16	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45303666	G	G	45303666	3	3	95	1	0	0	0	0	1	0	0	0	2728	797	28	4	1429	4	CBLC	19	45303666	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	510798	45303666	13825317	834	95576											
PVRL2	5819	broad.mit.edu	37	chr19	45381862	45381862	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctccctcatctcacggcgGgcagtttatgtgtgacctgg	13	12	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45381862	A	A	45381862	1	1	95	0	1	0	0	0	0	0	0	0	12948	1219	43	4		4	PVRL2	19	45381862	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	78196	45381862	13747121	835	95577											
PPP1R13L	10848	broad.mit.edu	37	chr19	45883657	45883657	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaaccagatggaacctTccaatcagagcctccactga	7	14	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45883657	C	C	45883657	1	2	95	0	1	0	0	0	0	0	0	0	12459	1798	62	5		5	PPP1R13L	19	45883657	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	501795	45883657	13245326	836	95578											
ZC3H4	23211	broad.mit.edu	37	chr19	47572319	47572319	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcacagcggcctggggccTgtgccccggcccctggggcg	17	17	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47572319	C	C	47572319	1	2	95	0	1	0	0	0	0	0	0	0	17696	1595	55	5		5	ZC3H4	19	47572319	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1688662	47572319	11556664	837	95579											
PRR12	57479	broad.mit.edu	37	chr19	50099342	50099342	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctggagtcggctctccaGgagcccctggcaaatacctg	11	15	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50099342	T	T	50099342	4	4	95	1	0	0	0	0	0	1	0	0	12690	1001	35	2	1764	2	PRR12	19	50099342	Nonsense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	2527023	50099342	9029641	838	95580											
IL4I1	259307	broad.mit.edu	37	chr19	50397696	50397696	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaacttggtcaggttgagCcccaggccctggcagagctt	14	11	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50397696	A	A	50397696	2	1	95	1	0	0	0	0	0	0	0	1	7767	726	26	3		3	IL4I1	19	50397696	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	298354	50397696	8731287	839	95581											
KLK1	3816	broad.mit.edu	37	chr19	51322674	51322674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttctgcctggggagcccCagctcgcagacagggcctcc	13	15	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51322674	T	T	51322674	1	4	95	0	1	0	0	0	0	0	0	0	8468	609	21	4		4	KLK1	19	51322674	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	924978	51322674	7806309	840	95582											
KLK8	11202	broad.mit.edu	37	chr19	51499412	51499412	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctcccacaggggtctgagCcccaggatgtgatgccctgg	13	14	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51499412	G	G	51499412	3	3	95	1	0	0	0	0	1	0	0	0	8481	739	26	4	100	4	KLK8	19	51499412	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	176738	51499412	7629571	841	95583											
CEACAM18	729767	broad.mit.edu	37	chr19	51984864	51984864	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacaattcagtgcatgatAgagagtttcccagagatctt	9	7	2	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51984864	T	T	51984864	2	4	95	1	0	0	0	0	0	0	0	1	3219	410	15	5		5	CEACAM18	19	51984864	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	485452	51984864	7144119	842	95584											
HAS1	3036	broad.mit.edu	37	chr19	52220138	52220138	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatctttgttcccaaccCcagtcacatcctcagcccca	4	19	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52220138	T	T	52220138	1	4	95	0	1	0	0	0	0	0	0	0	7027	638	22	4		4	HAS1	19	52220138	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	235274	52220138	6908845	843	95585											
FPR2	2358	broad.mit.edu	37	chr19	52272196	52272196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaatggccttttggctgGttcctgtgtaagttaattca	10	6	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52272196	T	T	52272196	3	4	95	1	0	0	0	0	1	0	0	0	6099	1270	44	3	287	3	FPR2	19	52272196	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	52058	52272196	6856787	844	95586											
FPR3	2359	broad.mit.edu	37	chr19	52327526	52327526	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actacgaatggggacacataCtgtattttcaactttgcatt	7	8	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52327526	T	T	52327526	2	4	95	1	0	0	0	0	0	0	0	1	6100	576	20	4		4	FPR3	19	52327526	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	55330	52327526	6801457	845	95587											
ZNF600	162966	broad.mit.edu	37	chr19	53282057	53282057	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggaaagagacagattaatCcacagaggaatatcacttca	8	7	2	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53282057	A	A	53282057	1	1	95	0	1	0	0	0	0	0	0	0	18157	870	30	3		3	ZNF600	19	53282057	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	954531	53282057	5846926	846	95588											
NLRP12	91662	broad.mit.edu	37	chr19	54313990	54313990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagcagaggcaccagggtCcctgaggatcgtggaaagaa	14	11	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54313990	A	A	54313990	3	1	95	1	0	0	0	0	1	0	0	0	10569	855	30	3	2390	3	NLRP12	19	54313990	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1031933	54313990	4814993	847	95589											
PRKCG	5582	broad.mit.edu	37	chr19	54401741	54401741	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgagctctacgccatcaaGatcttgaaaaaggacgtgat	10	8	3	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54401741	T	T	54401741	3	4	95	1	0	0	0	0	1	0	0	0	12618	933	33	3	1182	3	PRKCG	19	54401741	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	87751	54401741	4727242	848	95590											
LAIR2	3904	broad.mit.edu	37	chr19	55019474	55019474	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgaggtccctggaccctgtCccggctgctgtcctctctct	10	18	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55019474	G	G	55019474	1	3	95	0	1	0	0	0	0	0	0	0	8675	870	30	4		4	LAIR2	19	55019474	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	617733	55019474	4109509	849	95591											
LILRA1	11024	broad.mit.edu	37	chr19	55106301	55106301	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggagattgtgaagaaggGccagttccccatcccatcca	10	12	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55106301	A	A	55106301	3	1	95	1	0	0	0	0	1	0	0	0	8856	1203	42	4	252	4	LILRA1	19	55106301	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	86827	55106301	4022682	850	95592											
LILRB4	11006	broad.mit.edu	37	chr19	55176499	55176499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtgagggggtcaaggCtgaaggagatgttgcgggga	23	3	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55176499	A	A	55176499	1	1	95	0	1	0	0	0	0	0	0	0	8865	812	28	3		3	LILRB4	19	55176499	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	70198	55176499	3952484	851	95593											
KIR2DL3	3804	broad.mit.edu	37	chr19	55267558	55267558	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatcgtccatcatgatctttCtttccagggttcttcttgct	7	11	5	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55267558	A	A	55267558	1	1	95	0	1	0	0	0	0	0	0	0	8388	928	32	3		3	KIR2DL3	19	55267558	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	91059	55267558	3861425	852	95594											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272083	55272083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttcctctgggccctgcCacccacggaggaacctacag	10	16	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55272083	A	A	55272083	1	1	95	0	1	0	0	0	0	0	0	0	8388	609	21	2		2	KIR2DL3	19	55272083	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	4525	55272083	3856900	853	95595											
KIR2DL3	3804	broad.mit.edu	37	chr19	55278101	55278101	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaggatgggagcactcagGtgtgtgttcctcacaggtag	15	8	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55278101	A	A	55278101	1	1	95	0	1	0	0	0	0	0	0	0	8388	1276	44	4		4	KIR2DL3	19	55278101	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	6018	55278101	3850882	854	95596											
PTPRH	5794	broad.mit.edu	37	chr19	55716650	55716650	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgttctcctgcctactgcCccttaaacaagtaagagcaa	6	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55716650	T	T	55716650	1	4	95	0	1	0	0	0	0	0	0	0	12911	638	22	4		4	PTPRH	19	55716650	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	438549	55716650	3412333	855	95597											
EPN1	29924	broad.mit.edu	37	chr19	56196893	56196893	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgacggcaaggaccagggCgtgaacgtgcgtgagaaagc	17	10	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56196893	T	T	56196893	2	4	95	1	0	0	0	0	0	0	0	1	5227	755	27	4		4	EPN1	19	56196893	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	480243	56196893	2932090	856	95598											
NLRP13	126204	broad.mit.edu	37	chr19	56436478	56436478	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataatggagtctctcagtaGaaccaactccttctatgaca	6	10	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56436478	C	C	56436478	1	2	95	0	1	0	0	0	0	0	0	0	10570	957	33	4		4	NLRP13	19	56436478	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	239585	56436478	2692505	857	95599											
NLRP5	126206	broad.mit.edu	37	chr19	56544081	56544081	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcagcagcatcctgaCagagcgggccatgaagaccc	13	14	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56544081	T	T	56544081	3	4	95	1	0	0	0	0	1	0	0	0	10575	478	17	4	2411	4	NLRP5	19	56544081	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	107603	56544081	2584902	858	95600											
ZIM2	23619	broad.mit.edu	37	chr19	57286693	57286693	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggatgctgactggggactcGtacatattccaggagcagtg	15	8	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57286693	C	C	57286693	3	2	95	1	0	0	0	0	1	0	0	0	17810	1145	40	4	640	4	ZIM2	19	57286693	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	742612	57286693	1842290	859	95601											
C19orf18	147685	broad.mit.edu	37	chr19	58485592	58485592	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaaagaaaactttttgCggtgaaatgtaattaccttc	7	6	0	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58485592	G	G	58485592	1	3	95	0	1	0	0	0	0	0	0	0	1929	783	27	4		4	C19orf18	19	58485592	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1198899	58485592	643391	860	95602											
ZNF8	7554	broad.mit.edu	37	chr19	58806789	58806789	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccggaaagcagagccctgGctttgtttgacatccaaaaa	10	10	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58806789	A	A	58806789	3	1	95	1	0	0	0	0	1	0	0	0	18296	1203	42	4	1629	4	ZNF8	19	58806789	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	321197	58806789	322194	861	95603											
TGM6	343641	broad.mit.edu	37	chr20	2411435	2411435	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caatggggtatatggaggtgGgggtggacatgactaatgat	17	3	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2411435	C	C	2411435	1	2	95	0	1	0	0	0	0	0	0	0	15957	1247	43	4		4	TGM6	20	2411435	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08		2411435	60614085	862	95604											
TGM6	343641	broad.mit.edu	37	chr20	2411636	2411636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggactgtgcgctgatggtgGagggcagcggccttctccag	17	10	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2411636	A	A	2411636	3	1	95	1	0	0	0	0	1	0	0	0	15957	1175	41	4	1976	4	TGM6	20	2411636	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	201	2411636	60613884	863	95605											
PLCB4	5332	broad.mit.edu	37	chr20	9388751	9388751	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttttttgcttgattttcTtttatggtgctgatgagctt	9	6	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9388751	A	A	9388751	1	1	95	0	1	0	0	0	0	0	0	0	12125	1624	56	5		5	PLCB4	20	9388751	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	6977115	9388751	53636769	864	95606											
OTOR	56914	broad.mit.edu	37	chr20	16730683	16730683	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcaaaagtgactagacaaGgactcagatcttggggcaat	10	8	3	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16730683	C	C	16730683	1	2	95	0	1	0	0	0	0	0	0	0	11402	1015	35	4		4	OTOR	20	16730683	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	7341932	16730683	46294837	865	95607											
GGTLC1	92086	broad.mit.edu	37	chr20	23967133	23967133	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctgcgaccacagacaggTgagcagtgcccccgtcatcc	10	17	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23967133	A	A	23967133	3	1	95	1	0	0	0	0	1	0	0	0	6429	1696	59	5	581	5	GGTLC1	20	23967133	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	7236450	23967133	39058387	866	95608											
NINL	22981	broad.mit.edu	37	chr20	25493691	25493691	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctttatagcagttctgGgcccatgcaggccagcaggt	13	11	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25493691	C	C	25493691	1	2	95	0	1	0	0	0	0	0	0	0	10515	1247	43	4		4	NINL	20	25493691	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1526558	25493691	37531829	867	95609											
XKR7	343702	broad.mit.edu	37	chr20	30584572	30584572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggggagacggacttctGcatgtccaagtgggaggaga	16	8	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30584572	T	T	30584572	3	4	95	1	0	0	0	0	1	0	0	0	17563	1319	46	3	1062	3	XKR7	20	30584572	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	5090881	30584572	32440948	868	95610											
PLUNC	51297	broad.mit.edu	37	chr20	31827875	31827875	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgggtcacttgggaaacTcacttgacctcttaagtctt	8	11	4	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31827875	A	A	31827875	1	1	95	0	1	0	0	0	0	0	0	0	12210	1566	54	5		5	PLUNC	20	31827875	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1243303	31827875	31197645	869	95611											
TRPC4AP	26133	broad.mit.edu	37	chr20	33593689	33593689	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggatagtcactacaagggGcatcagcgacctctaccagc	12	12	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33593689	A	A	33593689	1	1	95	0	1	0	0	0	0	0	0	0	16706	1218	42	4		4	TRPC4AP	20	33593689	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1765814	33593689	29431831	870	95612											
PTPRT	11122	broad.mit.edu	37	chr20	40790092	40790092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggttggaactggtcccggGggtagctcatctccacaggg	16	11	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40790092	T	T	40790092	3	4	95	1	0	0	0	0	1	0	0	0	12920	1232	43	2	1803	2	PTPRT	20	40790092	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	7196403	40790092	22235428	871	95613											
SERINC3	10955	broad.mit.edu	37	chr20	43138621	43138621	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctaccagcagcaccagcTgaatgaggatgaagagggcg	13	9	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43138621	A	A	43138621	3	1	95	1	0	0	0	0	1	0	0	0	14194	1580	55	5	921	5	SERINC3	20	43138621	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	2348529	43138621	19886899	872	95614											
SPINLW1	57119	broad.mit.edu	37	chr20	44170914	44170914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtagtgggtttgctttgGggagctctccatctccttca	11	9	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44170914	T	T	44170914	1	4	95	0	1	0	0	0	0	0	0	0	15185	1247	43	2		2	SPINLW1	20	44170914	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1032293	44170914	18854606	873	95615											
PREX1	57580	broad.mit.edu	37	chr20	47273727	47273727	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacctgcaggccagccacCtgggtagggacggcagagga	15	14	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47273727	T	T	47273727	5	4	95	1	0	0	0	0	0	0	1	0	12582	695	24	4	3097	4	PREX1	20	47273727	Splice_Site	SNP	C	TCGA-35-5375-01A-01D-1625-08	3102813	47273727	15751793	874	95616											
PREX1	57580	broad.mit.edu	37	chr20	47361594	47361594	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacattcccaagttcatgctGagactgcggctccgggtgta	11	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47361594	C	C	47361594	3	2	95	1	0	0	0	0	1	0	0	0	12582	1299	45	4	4749	4	PREX1	20	47361594	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	87867	47361594	15663926	875	95617											
STAU1	6780	broad.mit.edu	37	chr20	47739709	47739709	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccttctccttttttgcctGctggatctgggccagtcggc	10	14	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47739709	C	C	47739709	3	2	95	1	0	0	0	0	1	0	0	0	15390	1328	46	4	875	4	STAU1	20	47739709	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	378115	47739709	15285811	876	95618											
PTGIS	5740	broad.mit.edu	37	chr20	48129765	48129765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgggtgatgaagggggcaGctgtaagcctgaggctctca	17	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48129765	T	T	48129765	3	4	95	1	0	0	0	0	1	0	0	0	12858	971	34	3	456	3	PTGIS	20	48129765	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	390056	48129765	14895755	877	95619											
SPATA2	9825	broad.mit.edu	37	chr20	48525018	48525018	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttagtatccattgaactggGcttccccatccgatcgaggg	10	11	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48525018	C	C	48525018	3	2	95	1	0	0	0	0	1	0	0	0	15121	1203	42	4	1560	4	SPATA2	20	48525018	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	395253	48525018	14500502	878	95620											
PARD6B	84612	broad.mit.edu	37	chr20	49366995	49366997	+	In_Frame_Del	DEL	AGA	-	-													gctccagatcaaaaactcttAgaagaagatggaacaatcat							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49366997	-	-	49366995	7	5	95	1	0	1	0	1	0	0	0	0	11540	417	15	0	1099	0	PARD6B	20	49366995	In_Frame_Del	DEL	AGA	TCGA-35-5375-01A-01D-1625-08	841977	49366995	13658525	879	95621											
ZNF217	7764	broad.mit.edu	37	chr20	52193535	52193535	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgctggtgagaggacagCgctgcccagaacattctgaa	14	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52193535	T	T	52193535	3	4	95	1	0	0	0	0	1	0	0	0	17898	768	27	4	1386	4	ZNF217	20	52193535	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	2826540	52193535	10831985	880	95622											
SYCP2	10388	broad.mit.edu	37	chr20	58461889	58461889	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcccttttgacttttctcTctgaaaaaaattgtaagtta	4	7	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58461889	C	C	58461889	3	2	95	1	0	0	0	0	1	0	0	0	15551	1565	54	5	2311	5	SYCP2	20	58461889	Missense_Mutation	SNP	T	TCGA-35-5375-01A-01D-1625-08	6268354	58461889	4563631	881	95623											
CDH4	1002	broad.mit.edu	37	chr20	60308764	60308765	+	Intron	INS	-	GAAA	GAAA													ggaaagaagaaagaaagaatINSgaaagaaagaaagaaaaaga							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAAA	60308765	GAAA	GAAA	60308764	6	5	95	0	1	1	1	0	0	0	0	0	3142	1479	51	0		0	CDH4	20	60308764	Intron	INS	-	TCGA-35-5375-01A-01D-1625-08	1846875	60308764	2716756	882	95624											
DIDO1	11083	broad.mit.edu	37	chr20	61542492	61542492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctctttcaaggtcaggCcatcgctgtcactatcggag	11	11	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61542492	A	A	61542492	3	1	95	1	0	0	0	0	1	0	0	0	4562	739	26	3	6435	3	DIDO1	20	61542492	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1233728	61542492	1483028	883	95625											
COL20A1	57642	broad.mit.edu	37	chr20	61950436	61950436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacccagcccccctacctcCagagcacaccatcgtcttcc	4	22	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61950436	A	A	61950436	3	1	95	1	0	0	0	0	1	0	0	0	3711	594	21	2	2772	2	COL20A1	20	61950436	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	407944	61950436	1075084	884	95626											
GMEB2	26205	broad.mit.edu	37	chr20	62226975	62226975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacctaccgtcggctgcggCgggcgtgaggggaatgtact	17	11	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62226975	A	A	62226975	3	1	95	1	0	0	0	0	1	0	0	0	6552	768	27	3	1005	3	GMEB2	20	62226975	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	276539	62226975	798545	885	95627											
SAMD10	140700	broad.mit.edu	37	chr20	62608630	62608630	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgattggcctgctgctgGccgccctctggctgcgggag	16	13	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62608630	A	A	62608630	3	1	95	1	0	0	0	0	1	0	0	0	13926	1203	42	4	403	4	SAMD10	20	62608630	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	381655	62608630	416890	886	95628											
TPTE	7179	broad.mit.edu	37	chr21	10916337	10916337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggacattggccctcctGcccaattcttcaattataca	8	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10916337	T	T	10916337	1	4	95	0	1	0	0	0	0	0	0	0	16554	1334	46	3		3	TPTE	21	10916337	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08		10916337	37213558	887	95629											
BAGE2	85319	broad.mit.edu	37	chr21	11021203	11021203	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatttgatgaaatatctgcAgtagacacctataaaaagca	6	6	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11021203	T	T	11021203	1	4	95	0	1	0	0	0	0	0	0	0	1297	203	7	5		5	BAGE2	21	11021203	3'UTR	SNP	A	TCGA-35-5375-01A-01D-1625-08	104866	11021203	37108692	888	95630											
BAGE2	85319	broad.mit.edu	37	chr21	11039103	11039103	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgttccttttctccttgtaGcctttctataaccaactgtt	4	12	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11039103	C	C	11039103	1	2	95	0	1	0	0	0	0	0	0	0	1297	986	34	4		4	BAGE2	21	11039103	3'UTR	SNP	G	TCGA-35-5375-01A-01D-1625-08	17900	11039103	37090792	889	95631											
USP25	29761	broad.mit.edu	37	chr21	17202921	17202921	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacaaatctatgatacaaGtaagtgaaattttgagctag	8	5	1	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17202921	A	A	17202921	5	1	95	1	0	0	0	0	0	0	1	0	17182	1043	36	4	1823	4	USP25	21	17202921	Splice_Site	SNP	G	TCGA-35-5375-01A-01D-1625-08	6163818	17202921	30926974	890	95632											
TMPRSS15	5651	broad.mit.edu	37	chr21	19776068	19776068	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtctacatgcataccAgtcagtgtaagtgagttgtg	10	9	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19776068	G	G	19776068	1	3	95	0	1	0	0	0	0	0	0	0	16369	203	7	5		5	TMPRSS15	21	19776068	5'Flank	SNP	A	TCGA-35-5375-01A-01D-1625-08	2573147	19776068	28353827	891	95633											
RNF160	26046	broad.mit.edu	37	chr21	30308959	30308959	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggcataagcctgaacaggtGatagagcaatttattcaaac	9	7	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30308959	C	C	30308959	3	2	95	1	0	0	0	0	1	0	0	0	13566	1290	45	4	777	4	RNF160	21	30308959	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	10532891	30308959	17820936	892	95634											
RNF160	26046	broad.mit.edu	37	chr21	30331753	30331753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagccggagattcccaaCaaaacatttgagcagtaggc	10	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30331753	A	A	30331753	1	1	95	0	1	0	0	0	0	0	0	0	13566	493	17	3		3	RNF160	21	30331753	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	22794	30331753	17798142	893	95635											
C21orf45	54069	broad.mit.edu	37	chr21	33642869	33642869	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatgtcttgctttaggAaacgaagcagcaactcatta	8	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33642869	C	C	33642869	1	2	95	0	1	0	0	0	0	0	0	0	2148	261	9	5		5	C21orf45	21	33642869	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	3311116	33642869	14487026	894	95636											
GCFC1	94104	broad.mit.edu	37	chr21	34131384	34131384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagattagtatttttgcaTtcttaccttttcactgaaac	5	7	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34131384	C	C	34131384	1	2	95	0	1	0	0	0	0	0	0	0	6351	1508	52	5		5	GCFC1	21	34131384	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	488515	34131384	13998511	895	95637											
SETD4	54093	broad.mit.edu	37	chr21	37416253	37416263	+	Splice_Site	DEL	ACCTAGAAAGA	-	-													cttcattaaacgctgcttttAcctagaaagaaaaactgtta							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37416263	-	-	37416253	8	5	95	1	0	1	0	1	0	0	1	0	14246	405	14	0	637	0	SETD4	21	37416253	Splice_Site	DEL	ACCTAGAAAGA	TCGA-35-5375-01A-01D-1625-08	3284869	37416253	10713642	896	95638											
CLDN14	23562	broad.mit.edu	37	chr21	37833476	37833476	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgccaccaatgagcgagAgggacgaggagatgaagccc	17	9	0	4			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37833476	T	T	37833476	3	4	95	1	0	0	0	0	1	0	0	0	3506	304	11	5	205	5	CLDN14	21	37833476	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	417223	37833476	10296419	897	95639											
DSCR6	53820	broad.mit.edu	37	chr21	38380502	38380502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacacctggagatgctgaGctgaccagaactggaaggcc	13	11	0	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38380502	T	T	38380502	3	4	95	1	0	0	0	0	1	0	0	0	4813	962	34	3	156	3	DSCR6	21	38380502	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	547026	38380502	9749393	898	95640											
C21orf33	8209	broad.mit.edu	37	chr21	45563153	45563153	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcgaggtgactgtgggccaCgagcaggaggaaggtggcaa	19	7	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45563153	G	G	45563153	3	3	95	1	0	0	0	0	1	0	0	0	2147	535	19	4	610	4	C21orf33	21	45563153	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	7182651	45563153	2566742	899	95641											
POTEH	23784	broad.mit.edu	37	chr22	16279187	16279187	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacagattaaaagaaagAactataccttccatatctat	3	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16279187	G	G	16279187	1	3	95	0	1	0	0	0	0	0	0	0	12363	261	9	5		5	POTEH	22	16279187	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08		16279187	35025379	900	95642											
GAB4	128954	broad.mit.edu	37	chr22	17444635	17444635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctcggctggaagtccaGggccgcgtagtggatgttac	15	10	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17444635	T	T	17444635	3	4	95	1	0	0	0	0	1	0	0	0	6211	991	35	2	171	2	GAB4	22	17444635	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1165448	17444635	33859931	901	95643											
CHEK2	11200	broad.mit.edu	37	chr22	29130298	29130298	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcaacgtgccaaaaacctgGacaactccaatcagaacctt	5	13	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29130298	C	C	29130298	1	2	95	0	1	0	0	0	0	0	0	0	3366	1189	41	4		4	CHEK2	22	29130298	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	11685663	29130298	22174268	902	95644											
ASCC2	84164	broad.mit.edu	37	chr22	30221692	30221692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgcgttccaggtactcCtccactagggcgggaatgtt	14	11	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30221692	A	A	30221692	3	1	95	1	0	0	0	0	1	0	0	0	1036	680	24	2	2186	2	ASCC2	22	30221692	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	1091394	30221692	21082874	903	95645											
DEPDC5	9681	broad.mit.edu	37	chr22	32161132	32161132	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggaaacaatgggttactTaagtgtagtgttagcctatt	10	4	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32161132	G	G	32161132	1	3	95	0	1	0	0	0	0	0	0	0	4482	1769	61	5		5	DEPDC5	22	32161132	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	1939440	32161132	19143434	904	95646											
APOL2	23780	broad.mit.edu	37	chr22	36629211	36629211	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcctacctgggttcatggTgccagcggctgggttaccga	15	11	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36629211	A	A	36629211	1	1	95	0	1	0	0	0	0	0	0	0	808	1711	59	5		5	APOL2	22	36629211	5'UTR	SNP	T	TCGA-35-5375-01A-01D-1625-08	4468079	36629211	14675355	905	95647											
NCF4	4689	broad.mit.edu	37	chr22	37273714	37273714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctctgaattaccgggacgCtgagggggatctggttcggc	16	9	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37273714	T	T	37273714	3	4	95	1	0	0	0	0	1	0	0	0	10313	797	28	4	1148	4	NCF4	22	37273714	Missense_Mutation	SNP	C	TCGA-35-5375-01A-01D-1625-08	644503	37273714	14030852	906	95648											
MOV10L1	54456	broad.mit.edu	37	chr22	50582321	50582321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttagaatcttagagagtGcggagaaccttcccacctaa	10	9	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50582321	A	A	50582321	1	1	95	0	1	0	0	0	0	0	0	0	9813	1334	46	4		4	MOV10L1	22	50582321	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	13308607	50582321	722245	907	95649											
SELO	83642	broad.mit.edu	37	chr22	50646965	50646965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgggtcttccctccagGtttggatcctttgagatttt	10	11	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50646965	T	T	50646965	3	4	95	1	0	0	0	0	1	0	0	0	14131	1275	44	3	769	3	SELO	22	50646965	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	64644	50646965	657601	908	95650											
CSF2RA	1438	broad.mit.edu	37	chrX	1424439	1424439	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaggcaggggtgggcggAgcagtgacctgggatggaag	22	5	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1424439	G	G	1424439	1	3	95	0	1	0	0	0	0	0	0	0	3968	319	11	5		5	CSF2RA	23	1424439	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08		1424439	153846121	909	95651											
PRPS2	5634	broad.mit.edu	37	chrX	12837535	12837535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcttgcatcatctctcgGgtgtggttgcctgctacatt	10	10	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12837535	T	T	12837535	1	4	95	0	1	0	0	0	0	0	0	0	12686	1247	43	2		2	PRPS2	23	12837535	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	11413096	12837535	142433025	910	95652											
MAP7D2	256714	broad.mit.edu	37	chrX	20031771	20031771	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaaaacaaaaaacaaaatCaagtaagaggacaataagac	5	6	1	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20031771	T	T	20031771	1	4	95	0	1	0	0	0	0	0	0	0	9360	841	29	4		4	MAP7D2	23	20031771	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	7194236	20031771	135238789	911	95653											
MBTPS2	51360	broad.mit.edu	37	chrX	21900704	21900704	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatctaatagggtttttcatCttgctgggtggcagtgtact	12	6	3	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21900704	T	T	21900704	2	4	95	1	0	0	0	0	0	0	0	1	9455	903	32	4		4	MBTPS2	23	21900704	Silent	SNP	C	TCGA-35-5375-01A-01D-1625-08	1868933	21900704	133369856	912	95654											
PHEX	5251	broad.mit.edu	37	chrX	22115063	22115063	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaataacaaaaatctcTtttcaacagataatgattcc	2	7	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22115063	C	C	22115063	1	2	95	0	1	0	0	0	0	0	0	0	11914	1624	56	5		5	PHEX	23	22115063	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	214359	22115063	133155497	913	95655											
MAGEB16	139604	broad.mit.edu	37	chrX	35820657	35820657	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccgcagatgctctcgaccAgaaagtggcttttttggtga	12	10	1	3			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35820657	T	T	35820657	3	4	95	1	0	0	0	0	1	0	0	0	9266	188	7	5	346	5	MAGEB16	23	35820657	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	13705594	35820657	119449903	914	95656											
CXorf59	286464	broad.mit.edu	37	chrX	36122632	36122632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggttttggttctatcccGtgtagtgccatactgcagca	10	10	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36122632	T	T	36122632	3	4	95	1	0	0	0	0	1	0	0	0	4148	1145	40	3	895	3	CXorf59	23	36122632	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	301975	36122632	119147928	915	95657											
KDM6A	7403	broad.mit.edu	37	chrX	44949010	44949010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatttgaatttcctaatgGgttcttggtggcccaatctt	8	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44949010	T	T	44949010	3	4	95	1	0	0	0	0	1	0	0	0	8207	1232	43	2	3669	2	KDM6A	23	44949010	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	8826378	44949010	110321550	916	95658											
SMC1A	8243	broad.mit.edu	37	chrX	53438545	53438546	+	Intron	INS	-	A	A													aaactctgtctcaaaaaaacINSaaaaaaacaaaaaaaaagac							TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53438546	A	A	53438545	6	5	95	0	1	1	1	0	0	0	0	0	14895	493	17	0		0	SMC1A	23	53438545	Intron	INS	-	TCGA-35-5375-01A-01D-1625-08	8489535	53438545	101832015	917	95659											
TBX22	50945	broad.mit.edu	37	chrX	79283612	79283612	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtttgttttatttttacatAtcaattaaataacaacatcc	2	7	1	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79283612	T	T	79283612	1	4	95	0	1	0	0	0	0	0	0	0	15780	464	16	5		5	TBX22	23	79283612	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	25845067	79283612	75986948	918	95660											
CSTF2	1478	broad.mit.edu	37	chrX	100079045	100079045	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcgggtaaaccttgaatggGataggaactacctgattgct	12	7	0	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100079045	T	T	100079045	1	4	95	0	1	0	0	0	0	0	0	0	4018	1189	41	3		3	CSTF2	23	100079045	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	20795433	100079045	55191515	919	95661											
NXF2B	728343	broad.mit.edu	37	chrX	101581408	101581408	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggcaagatccccgcagagGccttcaagcaaatctcctaa	9	13	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101581408	C	C	101581408	3	2	95	1	0	0	0	0	1	0	0	0	10879	1203	42	4	1943	4	NXF2B	23	101581408	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1502363	101581408	53689152	920	95662											
TBC1D8B	54885	broad.mit.edu	37	chrX	106092442	106092442	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgtctttcattataattAtttgtgtatttttttttttt	3	3	2	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106092442	T	T	106092442	1	4	95	0	1	0	0	0	0	0	0	0	15748	464	16	5		5	TBC1D8B	23	106092442	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	4511034	106092442	49178118	921	95663											
COL4A6	1288	broad.mit.edu	37	chrX	107455052	107455052	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctgatcagatagaggatGggacagcaagagcctgaaac	12	7	2	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107455052	A	A	107455052	1	1	95	0	1	0	0	0	0	0	0	0	3727	1363	47	4		4	COL4A6	23	107455052	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1362610	107455052	47815508	922	95664											
GUCY2F	2986	broad.mit.edu	37	chrX	108718455	108718455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgaattctgtctgcctgGtgaatcctctggagggcttt	12	10	3	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108718455	T	T	108718455	3	4	95	1	0	0	0	0	1	0	0	0	6963	1252	44	3	2687	3	GUCY2F	23	108718455	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1263403	108718455	46552105	923	95665											
ALG13	79868	broad.mit.edu	37	chrX	110924304	110924304	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttttgccccacccaacCggtgacacagcccggggccc	10	18	1	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110924304	A	A	110924304	1	1	95	0	1	0	0	0	0	0	0	0	515	667	23	1		1	ALG13	23	110924304	5'Flank	SNP	C	TCGA-35-5375-01A-01D-1625-08	2205849	110924304	44346256	924	95666											
ACTRT1	139741	broad.mit.edu	37	chrX	127185207	127185207	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaagctgtgatcttgatggGagtacctttggaagccagct	13	7	1	3	rs138169925		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127185207	C	C	127185207	3	2	95	1	0	0	0	0	1	0	0	0	218	1174	41	4	155	4	ACTRT1	23	127185207	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	16260903	127185207	28085353	925	95667											
SLC25A14	9016	broad.mit.edu	37	chrX	129479160	129479160	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtttatttttagcaccAgaaaagtaccactgtaagtc	7	7	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129479160	T	T	129479160	3	4	95	1	0	0	0	0	1	0	0	0	14590	188	7	5	86	5	SLC25A14	23	129479160	Missense_Mutation	SNP	A	TCGA-35-5375-01A-01D-1625-08	2293953	129479160	25791400	926	95668											
CXorf48	54967	broad.mit.edu	37	chrX	134292300	134292300	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtcacttttaatttcacAtgttatttgatagtgtacta	6	5	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134292300	C	C	134292300	1	2	95	0	1	0	0	0	0	0	0	0	4144	232	8	5		5	CXorf48	23	134292300	Intron	SNP	A	TCGA-35-5375-01A-01D-1625-08	4813140	134292300	20978260	927	95669											
DDX26B	203522	broad.mit.edu	37	chrX	134713798	134713798	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgtcaaaatctgctccAtcagagcttataaatatgac	5	10	3	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134713798	T	T	134713798	2	4	95	1	0	0	0	0	0	0	0	1	4386	204	8	5		5	DDX26B	23	134713798	Silent	SNP	A	TCGA-35-5375-01A-01D-1625-08	421498	134713798	20556762	928	95670											
GPR112	139378	broad.mit.edu	37	chrX	135487998	135487998	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaagactcggcggaagatGatcctgcatgacctcaaagg	12	10	1	5			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135487998	T	T	135487998	3	4	95	1	0	0	0	0	1	0	0	0	6694	1290	45	3	8880	3	GPR112	23	135487998	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	774200	135487998	19782562	929	95671											
ZIC3	7547	broad.mit.edu	37	chrX	136650009	136650009	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggcggccagggaaaggGgcgacgccccgcaacggccg	19	13	0	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136650009	T	T	136650009	1	4	95	0	1	0	0	0	0	0	0	0	17806	1247	43	2		2	ZIC3	23	136650009	Intron	SNP	G	TCGA-35-5375-01A-01D-1625-08	1162011	136650009	18620551	930	95672											
F9	2158	broad.mit.edu	37	chrX	138619567	138619567	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagcaattcattttatcctCtagctaatatatgaaacata	3	7	2	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138619567	A	A	138619567	1	1	95	0	1	0	0	0	0	0	0	0	5397	928	32	3		3	F9	23	138619567	Intron	SNP	C	TCGA-35-5375-01A-01D-1625-08	1969558	138619567	16650993	931	95673											
LDOC1	23641	broad.mit.edu	37	chrX	140270799	140270799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttcttcgtcgtcgtcGtcttcgtcgtcatcccagcc	7	17	4	0			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140270799	T	T	140270799	3	4	95	1	0	0	0	0	1	0	0	0	8781	1136	40	3	36	3	LDOC1	23	140270799	Missense_Mutation	SNP	G	TCGA-35-5375-01A-01D-1625-08	1651232	140270799	14999761	932	95674											
PRRG3	79057	broad.mit.edu	37	chrX	150867323	150867323	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaggcctgggcagagccgTggagggccatgcctaggggt	18	11	0	1			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150867323	C	C	150867323	1	2	95	0	1	0	0	0	0	0	0	0	12713	1711	59	5		5	PRRG3	23	150867323	Intron	SNP	T	TCGA-35-5375-01A-01D-1625-08	10596524	150867323	4403237	933	95675											
GAB3	139716	broad.mit.edu	37	chrX	153927568	153927568	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcctggtcaagtgcttaCatttcctctgaggcttgaga	11	10	2	2			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153927568	A	A	153927568	5	1	95	1	0	0	0	0	0	0	1	0	6210	492	17	3	437	3	GAB3	23	153927568	Splice_Site	SNP	C	TCGA-35-5375-01A-01D-1625-08	3060245	153927568	1342992	934	95676											
ATAD3C	219293	broad.mit.edu	37	chr1	1387844	1387844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcataaaacagggctggcaGgtggctgaggggcagcatgt	16	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1387844	T	T	1387844	1	4	96	0	1	0	0	0	0	0	0	0	1079	1015	35	2		2	ATAD3C	1	1387844	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08		1387844	247862777	1	95677											
CHD5	26038	broad.mit.edu	37	chr1	6206463	6206463	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttggtagttgcgatacatCaccgtgtggtacagctccag	11	10	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6206463	A	A	6206463	2	1	96	1	0	0	0	0	0	0	0	1	3359	813	29	3		3	CHD5	1	6206463	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	4818619	6206463	243044158	2	95678											
CAMTA1	23261	broad.mit.edu	37	chr1	7811344	7811344	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaaaaaaaattccagcAgagccgacgggctgctgtgc	11	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7811344	G	G	7811344	3	3	96	1	0	0	0	0	1	0	0	0	2639	188	7	5	4853	5	CAMTA1	1	7811344	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	1604881	7811344	241439277	3	95679											
CLSTN1	22883	broad.mit.edu	37	chr1	9791175	9791175	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacgcgatggaaagcatgTgaacctgaaggagccgcgcc	14	10	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9791175	A	A	9791175	1	1	96	0	1	0	0	0	0	0	0	0	3593	1711	59	5		5	CLSTN1	1	9791175	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1979831	9791175	239459446	4	95680											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12267131	12267131	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggctgagccctggcaggatGaccctgcgaaggggccctgg	18	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12267131	A	A	12267131	1	1	96	0	1	0	0	0	0	0	0	0	16417	1305	45	4		4	TNFRSF1B	1	12267131	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2475956	12267131	236983490	5	95681											
CELA2B	51032	broad.mit.edu	37	chr1	15809916	15809916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagtgggagccaggagccCccaggcctgggagggaaggg	20	9	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15809916	A	A	15809916	1	1	96	0	1	0	0	0	0	0	0	0	3242	638	22	2		2	CELA2B	1	15809916	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3542785	15809916	233440705	6	95682											
EPHA2	1969	broad.mit.edu	37	chr1	16451705	16451705	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggggctccaggccctgtcGaggctcagatggggatcccc	15	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16451705	A	A	16451705	1	1	96	0	1	0	0	0	0	0	0	0	5209	1073	37	4		4	EPHA2	1	16451705	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	641789	16451705	232798916	7	95683											
CROCC	9696	broad.mit.edu	37	chr1	17292345	17292345	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggcagtgcgcggggccctCcgggaattcctgcaagagct	16	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17292345	T	T	17292345	2	4	96	1	0	0	0	0	0	0	0	1	3925	842	30	4		4	CROCC	1	17292345	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	840640	17292345	231958276	8	95684											
USP48	84196	broad.mit.edu	37	chr1	22032301	22032301	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagagcactgttcccaactGatgacacagggctgcatctt	9	11	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22032301	A	A	22032301	3	1	96	1	0	0	0	0	1	0	0	0	17206	1294	45	4	840	4	USP48	1	22032301	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4739956	22032301	227218320	9	95685											
HSPG2	3339	broad.mit.edu	37	chr1	22161447	22161447	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgagggcagggctggggagGagggaggcagaggtccagtg	23	7	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22161447	C	C	22161447	1	2	96	0	1	0	0	0	0	0	0	0	7500	1189	41	4		4	HSPG2	1	22161447	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	129146	22161447	227089174	10	95686											
GALE	2582	broad.mit.edu	37	chr1	24123493	24123493	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagctttaaccccagggCcactcctctgtcccttccct	5	20	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24123493	T	T	24123493	1	4	96	0	1	0	0	0	0	0	0	0	6264	754	26	4		4	GALE	1	24123493	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1962046	24123493	225127128	11	95687											
MAP3K6	9064	broad.mit.edu	37	chr1	27686699	27686699	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggtcccatgcttcacacctCggtttcattcccatcccaca	5	18	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27686699	T	T	27686699	1	4	96	0	1	0	0	0	0	0	0	0	9346	899	31	4		4	MAP3K6	1	27686699	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3563206	27686699	221563922	12	95688											
PTPRU	10076	broad.mit.edu	37	chr1	29644213	29644213	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggggatgtgaggaggcccAgcaagccctggacgtaactc	15	10	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29644213	T	T	29644213	1	4	96	0	1	0	0	0	0	0	0	0	12921	203	7	5		5	PTPRU	1	29644213	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1957514	29644213	219606408	13	95689											
PTPRU	10076	broad.mit.edu	37	chr1	29647149	29647149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcagaggctcagcccaGgccaggggccgggaacaggg	20	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29647149	T	T	29647149	1	4	96	0	1	0	0	0	0	0	0	0	12921	1015	35	2		2	PTPRU	1	29647149	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2936	29647149	219603472	14	95690											
CSMD2	114784	broad.mit.edu	37	chr1	34035054	34035054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcccaccagtgtgtatccgGaattgcaggagaagatggct	13	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34035054	T	T	34035054	3	4	96	1	0	0	0	0	1	0	0	0	3979	1174	41	3	2474	3	CSMD2	1	34035054	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4387905	34035054	215215567	15	95691											
GJB5	2709	broad.mit.edu	37	chr1	35223275	35223275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggggagaacagtgggcGcctctacctgaaccccggca	13	14	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35223275	T	T	35223275	3	4	96	1	0	0	0	0	1	0	0	0	6475	1087	38	3	346	3	GJB5	1	35223275	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1188221	35223275	214027346	16	95692											
KIAA0319L	79932	broad.mit.edu	37	chr1	35907738	35907738	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtcagaactctctaatgctGactaaggacccagcccagtc	9	13	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35907738	A	A	35907738	1	1	96	0	1	0	0	0	0	0	0	0	8239	1305	45	4		4	KIAA0319L	1	35907738	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	684463	35907738	213342883	17	95693											
TEKT2	27285	broad.mit.edu	37	chr1	36553831	36553831	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagggttgggtgggcaatgGaaggagggaggagagaaatg	22	2	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36553831	A	A	36553831	1	1	96	0	1	0	0	0	0	0	0	0	15875	1189	41	4		4	TEKT2	1	36553831	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	646093	36553831	212696790	18	95694											
GJA9	81025	broad.mit.edu	37	chr1	39341359	39341359	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagtttccttttctccagctGacaaagctcttgctccaatc	5	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39341359	A	A	39341359	4	1	96	1	0	0	0	0	0	1	0	0	6470	1299	45	4	1139	4	GJA9	1	39341359	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2787528	39341359	209909262	19	95695											
PPT1	5538	broad.mit.edu	37	chr1	40542717	40542717	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaggaagaaggaaaaatGgatagggtgcgtctgagtca	15	4	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40542717	A	A	40542717	1	1	96	0	1	0	0	0	0	0	0	0	12512	1363	47	4		4	PPT1	1	40542717	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1201358	40542717	208707904	20	95696											
TIE1	7075	broad.mit.edu	37	chr1	43773124	43773124	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagagggccgttttgGgcagagctgccaggagcagt	17	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43773124	A	A	43773124	3	1	96	1	0	0	0	0	1	0	0	0	16016	1232	43	4	816	4	TIE1	1	43773124	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3230407	43773124	205477497	21	95697											
ST3GAL3	6487	broad.mit.edu	37	chr1	44257712	44257712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtttgggcagagccagtGggagcttgcttttttattat	14	5	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44257712	T	T	44257712	1	4	96	0	1	0	0	0	0	0	0	0	15334	1363	47	2		2	ST3GAL3	1	44257712	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	484588	44257712	204992909	22	95698											
NASP	4678	broad.mit.edu	37	chr1	46083385	46083385	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgattgttgagtgcagtcCtcacagaaaacggtacttgt	10	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46083385	T	T	46083385	1	4	96	0	1	0	0	0	0	0	0	0	10266	696	24	4		4	NASP	1	46083385	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1825673	46083385	203167236	23	95699											
ELAVL4	1996	broad.mit.edu	37	chr1	50663023	50663023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttctttgaaaatggaGcattcttattaatagttcca	5	6	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50663023	T	T	50663023	1	4	96	0	1	0	0	0	0	0	0	0	5094	986	34	3		3	ELAVL4	1	50663023	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4579638	50663023	198587598	24	95700											
LRP8	7804	broad.mit.edu	37	chr1	53715182	53715182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccggttctctggtctccCcaagacagggctctgcccac	9	17	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53715182	A	A	53715182	3	1	96	1	0	0	0	0	1	0	0	0	9050	623	22	2	176	2	LRP8	1	53715182	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3052159	53715182	195535439	25	95701											
ACOT11	26027	broad.mit.edu	37	chr1	55058377	55058377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggccactcacacttGcagggccctgattagagcag	12	14	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55058377	T	T	55058377	1	4	96	0	1	0	0	0	0	0	0	0	149	1334	46	3		3	ACOT11	1	55058377	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1343195	55058377	194192244	26	95702											
ACOT11	26027	broad.mit.edu	37	chr1	55081988	55081988	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcacccacacttccatcaTagtttcacatttcgatgatt	3	12	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55081988	C	C	55081988	1	2	96	0	1	0	0	0	0	0	0	0	149	1421	49	5		5	ACOT11	1	55081988	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	23611	55081988	194168633	27	95703											
DAB1	1600	broad.mit.edu	37	chr1	57480786	57480786	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcccattttctgcctgggcTtgtcggtctgtggacttgac	12	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57480786	A	A	57480786	3	1	96	1	0	0	0	0	1	0	0	0	4250	1609	56	5	465	5	DAB1	1	57480786	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	2398798	57480786	191769835	28	95704											
CACHD1	57685	broad.mit.edu	37	chr1	65130150	65130150	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttcatgtgagttttaaagGatccctgctatgtcttcctt	7	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65130150	T	T	65130150	1	4	96	0	1	0	0	0	0	0	0	0	2563	1189	41	3		3	CACHD1	1	65130150	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	7649364	65130150	184120471	29	95705											
JAK1	3716	broad.mit.edu	37	chr1	65332725	65332725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaaagtttccaaggtagCcaagtatttcaccttcaggt	8	9	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65332725	A	A	65332725	3	1	96	1	0	0	0	0	1	0	0	0	8007	739	26	3	2726	3	JAK1	1	65332725	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	202575	65332725	183917896	30	95706											
INSL5	10022	broad.mit.edu	37	chr1	67263727	67263727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcaaatcagtcatggaaCagccatcagtgcaacacaaa	6	12	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67263727	A	A	67263727	3	1	96	1	0	0	0	0	1	0	0	0	7839	478	17	3	34	3	INSL5	1	67263727	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1931002	67263727	181986894	31	95707											
IL12RB2	3595	broad.mit.edu	37	chr1	67787288	67787288	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgtatcttattgcagatgCgtgcaagagaggcgatgtga	13	6	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67787288	G	G	67787288	3	3	96	1	0	0	0	0	1	0	0	0	7697	768	27	4	86	4	IL12RB2	1	67787288	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	523561	67787288	181463333	32	95708											
RPE65	6121	broad.mit.edu	37	chr1	68903886	68903886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccttgtcaatattcaaaGgaagtacatatctcctaact	4	9	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68903886	T	T	68903886	3	4	96	1	0	0	0	0	1	0	0	0	13656	1000	35	2	509	2	RPE65	1	68903886	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1116598	68903886	180346735	33	95709											
LRRC7	57554	broad.mit.edu	37	chr1	70225969	70225969	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaatcatctcagttttaGattactcccactgcagtctt	5	10	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70225969	C	C	70225969	3	2	96	1	0	0	0	0	1	0	0	0	9107	942	33	4	84	4	LRRC7	1	70225969	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1322083	70225969	179024652	34	95710											
LRRC40	55631	broad.mit.edu	37	chr1	70650452	70650452	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaaattgtacaaaaattgGaaaatcagaacttactaaat	4	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70650452	T	T	70650452	1	4	96	0	1	0	0	0	0	0	0	0	9085	1189	41	3		3	LRRC40	1	70650452	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	424483	70650452	178600169	35	95711											
PTGER3	5733	broad.mit.edu	37	chr1	71437518	71437518	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatataagtaataaatttgTttgctttaaacgtttaaaac	4	3	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71437518	G	G	71437518	1	3	96	0	1	0	0	0	0	0	0	0	12850	1740	60	5		5	PTGER3	1	71437518	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	787066	71437518	177813103	36	95712											
NEGR1	257194	broad.mit.edu	37	chr1	72646676	72646676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatgtctgatgggaataCcttcagtggtatcaaccggc	10	11	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72646676	A	A	72646676	1	1	96	0	1	0	0	0	0	0	0	0	10412	522	18	3		3	NEGR1	1	72646676	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1209158	72646676	176603945	37	95713											
RABGGTB	5876	broad.mit.edu	37	chr1	76253373	76253373	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacagtatttatgtcttaaAatggcatccaactccatgca	6	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76253373	G	G	76253373	1	3	96	0	1	0	0	0	0	0	0	0	13076	29	1	5		5	RABGGTB	1	76253373	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3606697	76253373	172997248	38	95714											
NEXN	91624	broad.mit.edu	37	chr1	78399075	78399075	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattaaaacaaaaaatggaaGaagaaaaacgacgaacagag	8	4	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78399075	A	A	78399075	3	1	96	1	0	0	0	0	1	0	0	0	10450	943	33	4	1196	4	NEXN	1	78399075	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2145702	78399075	170851546	39	95715											
SAMD13	148418	broad.mit.edu	37	chr1	84815206	84815206	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactacaaatgtaatgttttTagcttgggcacaagtggtgt	10	5	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84815206	C	C	84815206	1	2	96	0	1	0	0	0	0	0	0	0	13929	1769	61	5		5	SAMD13	1	84815206	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	6416131	84815206	164435415	40	95716											
SSX2IP	117178	broad.mit.edu	37	chr1	85129904	85129904	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatacatgcaattaaaTaaagcaaggcagaatgactt	6	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85129904	A	A	85129904	1	1	96	0	1	0	0	0	0	0	0	0	15322	1421	49	5		5	SSX2IP	1	85129904	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	314698	85129904	164120717	41	95717											
COL24A1	255631	broad.mit.edu	37	chr1	86430757	86430757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttttccctagaagagaaCagcataaaagaagaaagtat	9	5	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86430757	A	A	86430757	1	1	96	0	1	0	0	0	0	0	0	0	3715	493	17	3		3	COL24A1	1	86430757	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1300853	86430757	162819864	42	95718											
CLCA1	1179	broad.mit.edu	37	chr1	86934763	86934763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctatgaaggcattgtcGttgcaatcgaccccaatgtg	11	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86934763	T	T	86934763	3	4	96	1	0	0	0	0	1	0	0	0	3488	1145	40	3	111	3	CLCA1	1	86934763	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	504006	86934763	162315858	43	95719											
GBP7	388646	broad.mit.edu	37	chr1	89599178	89599178	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaagaaaataacagtcagGtgggagaagaaccatcatgg	14	5	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89599178	A	A	89599178	1	1	96	0	1	0	0	0	0	0	0	0	6341	1276	44	4		4	GBP7	1	89599178	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2664415	89599178	159651443	44	95720											
AGL	178	broad.mit.edu	37	chr1	100316544	100316544	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcataggggtaactcattcGactgtggagttcttttaatt	9	6	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100316544	C	C	100316544	1	2	96	0	1	0	0	0	0	0	0	0	384	1073	37	4		4	AGL	1	100316544	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	10717366	100316544	148934077	45	95721											
AGL	178	broad.mit.edu	37	chr1	100340791	100340791	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattcagagaagcatcgactCattaactatcatcaggaaca	6	9	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100340791	G	G	100340791	2	3	96	1	0	0	0	0	0	0	0	1	384	813	29	4		4	AGL	1	100340791	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	24247	100340791	148909830	46	95722											
VCAM1	7412	broad.mit.edu	37	chr1	101190386	101190386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagattctggaatttatGtgtgtgaaggagttaatttg	13	1	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101190386	A	A	101190386	3	1	96	1	0	0	0	0	1	0	0	0	17264	1377	48	4	882	4	VCAM1	1	101190386	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	849595	101190386	148060235	47	95723											
VCAM1	7412	broad.mit.edu	37	chr1	101200327	101200327	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taacacttgatgttcaaggtGagtttgttttgagtttttgt	10	3	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200327	T	T	101200327	1	4	96	0	1	0	0	0	0	0	0	0	17264	1305	45	3		3	VCAM1	1	101200327	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	9941	101200327	148050294	48	95724											
DPH5	51611	broad.mit.edu	37	chr1	101487374	101487375	+	Intron	DEL	AC	-	-													gacagcaggtgaccattctaAcacacacacacacacacaca					rs71795555		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101487375	-	-	101487374	6	5	96	0	1	1	0	1	0	0	0	0	4763	58	2	0		0	DPH5	1	101487374	Intron	DEL	AC	TCGA-38-4625-01A-01D-1553-08	287047	101487374	147763247	49	95725											
COL11A1	1301	broad.mit.edu	37	chr1	103388868	103388868	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcatataacacatacccatCaaacaccaaaaataaaaact	1	11	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103388868	G	G	103388868	1	3	96	0	1	0	0	0	0	0	0	0	3699	841	29	4		4	COL11A1	1	103388868	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1901494	103388868	145861753	50	95726											
COL11A1	1301	broad.mit.edu	37	chr1	103400539	103400539	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattaccccacaaaattgaCtggttatgggacagtataca	7	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103400539	T	T	103400539	1	4	96	0	1	0	0	0	0	0	0	0	3699	580	20	4		4	COL11A1	1	103400539	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	11671	103400539	145850082	51	95727											
VAV3	10451	broad.mit.edu	37	chr1	108138841	108138841	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaatacttacagctgttGcctgctctattacccctctg	5	13	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108138841	T	T	108138841	2	4	96	1	0	0	0	0	0	0	0	1	17260	1306	46	3		3	VAV3	1	108138841	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	4738302	108138841	141111780	52	95728											
PRPF38B	55119	broad.mit.edu	37	chr1	109235396	109235396	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accatgaacctcaaccccatGatcctgaccaacatcctgtc	4	17	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109235396	C	C	109235396	3	2	96	1	0	0	0	0	1	0	0	0	12674	1290	45	4	185	4	PRPF38B	1	109235396	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1096555	109235396	140015225	53	95729											
PRPF38B	55119	broad.mit.edu	37	chr1	109238948	109238948	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actggtttgaatccttccttGatgatgaagaggtatgtcaa	10	6	1	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109238948	A	A	109238948	3	1	96	1	0	0	0	0	1	0	0	0	12674	1290	45	4	561	4	PRPF38B	1	109238948	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3552	109238948	140011673	54	95730											
WDR47	22911	broad.mit.edu	37	chr1	109525411	109525411	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatctggtcctgaaacagTagtaagaattaaaaaaaaaa	7	5	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109525411	A	A	109525411	1	1	96	0	1	0	0	0	0	0	0	0	17427	1653	57	5		5	WDR47	1	109525411	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	286463	109525411	139725210	55	95731											
WDR47	22911	broad.mit.edu	37	chr1	109553411	109553411	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacagggtttcaccgtgttAgccaggatggtctcaatctc	11	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109553411	G	G	109553411	1	3	96	0	1	0	0	0	0	0	0	0	17427	435	15	5		5	WDR47	1	109553411	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	28000	109553411	139697210	56	95732											
ATXN7L2	127002	broad.mit.edu	37	chr1	110034140	110034140	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggagaaccggggagcagctgGacacccagccaaggccctgc	15	14	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110034140	C	C	110034140	3	2	96	1	0	0	0	0	1	0	0	0	1221	1174	41	4	1993	4	ATXN7L2	1	110034140	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	480729	110034140	139216481	57	95733											
ALX3	257	broad.mit.edu	37	chr1	110607491	110607491	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcagtccaagggcagctgGgggaagctggcagctttgga	18	9	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110607491	A	A	110607491	2	1	96	1	0	0	0	0	0	0	0	1	557	1219	43	4		4	ALX3	1	110607491	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	573351	110607491	138643130	58	95734											
SLC16A4	9122	broad.mit.edu	37	chr1	110918224	110918224	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaagggtgaaattctataGagacctatgcctaaaaggga	10	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110918224	A	A	110918224	1	1	96	0	1	0	0	0	0	0	0	0	14523	957	33	4		4	SLC16A4	1	110918224	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	310733	110918224	138332397	59	95735											
LRIG2	9860	broad.mit.edu	37	chr1	113616016	113616016	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctaggccacgtccagGtcgagggggaaaatggcgcc	14	12	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113616016	T	T	113616016	1	4	96	0	1	0	0	0	0	0	0	0	9032	1276	44	3		3	LRIG2	1	113616016	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2697792	113616016	135634605	60	95736											
VANGL1	81839	broad.mit.edu	37	chr1	116206455	116206455	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacttctagttttcctcacCcctattgccttcatcctttt	4	14	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116206455	T	T	116206455	2	4	96	1	0	0	0	0	0	0	0	1	17246	610	22	4		4	VANGL1	1	116206455	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	2590439	116206455	133044166	61	95737											
TTF2	8458	broad.mit.edu	37	chr1	117626717	117626717	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcattggaaaaatgaggtgGagaaacgggtgaacagcaac	13	5	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117626717	T	T	117626717	4	4	96	1	0	0	0	0	0	1	0	0	16845	1175	41	3	2023	3	TTF2	1	117626717	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1420262	117626717	131623904	62	95738											
VTCN1	79679	broad.mit.edu	37	chr1	117715128	117715128	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgtctttgactactgacaCaggcagccgacttgtgtgtg	12	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117715128	G	G	117715128	1	3	96	0	1	0	0	0	0	0	0	0	17361	493	17	4		4	VTCN1	1	117715128	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	88411	117715128	131535493	63	95739											
HSD3B2	3284	broad.mit.edu	37	chr1	119988063	119988063	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctccatatccatacaGcaaaaagcttgctgagaagg	9	10	1	1	rs144135660	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119988063	T	T	119988063	1	4	96	0	1	0	0	0	0	0	0	0	7458	986	34	3		3	HSD3B2	1	119988063	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2272935	119988063	129262558	64	95740											
REG4	83998	broad.mit.edu	37	chr1	120337200	120337200	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctagcagaaaggaagagGacggggctgtgcaggagtta	18	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120337200	T	T	120337200	1	4	96	0	1	0	0	0	0	0	0	0	13322	1189	41	3		3	REG4	1	120337200	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	349137	120337200	128913421	65	95741											
NBPF7	343505	broad.mit.edu	37	chr1	120383062	120383062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatgggtcagtgttgtaCtgaaagctctcttgttttat	10	5	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120383062	A	A	120383062	1	1	96	0	1	0	0	0	0	0	0	0	10293	580	20	3		3	NBPF7	1	120383062	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	45862	120383062	128867559	66	95742											
NBPF10	100132406	broad.mit.edu	37	chr1	145508731	145508731	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgacattggaaatctAtgttttgtcagacacgccaa	7	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145508731	G	G	145508731	1	3	96	0	1	0	0	0	0	0	0	0	10287	464	16	5		5	NBPF10	1	145508731	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	25125669	145508731	103741890	67	95743											
MTMR11	10903	broad.mit.edu	37	chr1	149907874	149907874	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaggaaacagaaggaatGtcaaggtccagctctcagcc	11	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149907874	A	A	149907874	1	1	96	0	1	0	0	0	0	0	0	0	10034	1392	48	4		4	MTMR11	1	149907874	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4399143	149907874	99342747	68	95744											
PRUNE	58497	broad.mit.edu	37	chr1	150980988	150980988	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggcgggttcgagtcccGcctcctgactctggcctcta	13	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150980988	A	A	150980988	1	1	96	0	1	0	0	0	0	0	0	0	12746	1102	38	4		4	PRUNE	1	150980988	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	1073114	150980988	98269633	69	95745											
MLLT11	10962	broad.mit.edu	37	chr1	151039792	151039792	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggagctggaaggcctggGtctgtcagatacagccacct	14	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151039792	A	A	151039792	3	1	96	1	0	0	0	0	1	0	0	0	9720	1261	44	4	94	4	MLLT11	1	151039792	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	58804	151039792	98210829	70	95746											
GABPB2	126626	broad.mit.edu	37	chr1	151060786	151060786	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagactgggtaagcttagagGagaggtctcttaattatttc	11	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151060786	A	A	151060786	1	1	96	0	1	0	0	0	0	0	0	0	6219	1189	41	4		4	GABPB2	1	151060786	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	20994	151060786	98189835	71	95747											
RFX5	5993	broad.mit.edu	37	chr1	151316173	151316173	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccagcgagccccatggcCttaagcacatgggcatgtgc	11	14	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151316173	T	T	151316173	2	4	96	1	0	0	0	0	0	0	0	1	13374	680	24	4		4	RFX5	1	151316173	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	255387	151316173	97934448	72	95748											
FLG2	388698	broad.mit.edu	37	chr1	152324370	152324370	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgagacccctgaGggcccttcactgtcactgta	12	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152324370	T	T	152324370	2	4	96	1	0	0	0	0	0	0	0	1	5980	987	35	2		2	FLG2	1	152324370	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1008197	152324370	96926251	73	95749											
LCE1D	353134	broad.mit.edu	37	chr1	152770267	152770267	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcctgaacacccaccacCgagatgtcctgccagcagag	9	16	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152770267	A	A	152770267	1	1	96	0	1	0	0	0	0	0	0	0	8734	667	23	1		1	LCE1D	1	152770267	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	445897	152770267	96480354	74	95750											
LOR	4014	broad.mit.edu	37	chr1	153233489	153233489	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcgtgaagacctctggcGgcggtggcggtggcggcggc	20	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153233489	A	A	153233489	3	1	96	1	0	0	0	0	1	0	0	0	8984	1116	39	4	66	4	LOR	1	153233489	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	463222	153233489	96017132	75	95751											
NPR1	4881	broad.mit.edu	37	chr1	153665941	153665941	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaccctgtgccagaagcaAcagaggtgccaggcctcagc	11	15	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153665941	G	G	153665941	1	3	96	0	1	0	0	0	0	0	0	0	10689	58	2	5		5	NPR1	1	153665941	3'UTR	SNP	A	TCGA-38-4625-01A-01D-1553-08	432452	153665941	95584680	76	95752											
GATAD2B	57459	broad.mit.edu	37	chr1	153785637	153785637	+	Intron	DEL	C	-	-													acctgtggacctgtagggatCacatgaaccactcctgcaaa							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153785637	-	-	153785637	6	5	96	0	1	1	0	1	0	0	0	0	6323	841	29	0		0	GATAD2B	1	153785637	Intron	DEL	C	TCGA-38-4625-01A-01D-1553-08	119696	153785637	95464984	77	95753											
UBAP2L	9898	broad.mit.edu	37	chr1	154229505	154229505	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatgatgctgatctcttttCttcttctctcttccactgct	4	13	5	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154229505	T	T	154229505	1	4	96	0	1	0	0	0	0	0	0	0	16964	928	32	4		4	UBAP2L	1	154229505	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	443868	154229505	95021116	78	95754											
HAX1	10456	broad.mit.edu	37	chr1	154245987	154245987	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggagggatacgtttccacGataacttcggctttgatgac	12	8	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154245987	A	A	154245987	3	1	96	1	0	0	0	0	1	0	0	0	7041	1058	37	4	235	4	HAX1	1	154245987	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	16482	154245987	95004634	79	95755											
AQP10	89872	broad.mit.edu	37	chr1	154293724	154293724	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagagtttctgggtgtGtttgtactcatggtaggtag	15	5	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154293724	A	A	154293724	2	1	96	1	0	0	0	0	0	0	0	1	824	1364	48	4		4	AQP10	1	154293724	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	47737	154293724	94956897	80	95756											
ADAR	103	broad.mit.edu	37	chr1	154558793	154558793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccgagccgaatgccatcCcacgtaggcacaatgtcact	8	16	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154558793	A	A	154558793	3	1	96	1	0	0	0	0	1	0	0	0	281	624	22	2	630	2	ADAR	1	154558793	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	265069	154558793	94691828	81	95757											
SHC1	6464	broad.mit.edu	37	chr1	154940998	154940998	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtctgcggccatgaggttGaggctgctggtggagacggt	18	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154940998	A	A	154940998	2	1	96	1	0	0	0	0	0	0	0	1	14383	1277	45	4		4	SHC1	1	154940998	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	382205	154940998	94309623	82	95758											
HCN3	57657	broad.mit.edu	37	chr1	155254545	155254545	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccggcgtcagtaccaggaGaaggtcagcagggacaggag	16	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155254545	A	A	155254545	2	1	96	1	0	0	0	0	0	0	0	1	7064	933	33	4		4	HCN3	1	155254545	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	313547	155254545	93996076	83	95759											
HCN3	57657	broad.mit.edu	37	chr1	155255850	155255850	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctgcctcagtacgctgcaGaatcacagagctccagcccc	8	18	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155255850	T	T	155255850	1	4	96	0	1	0	0	0	0	0	0	0	7064	957	33	3		3	HCN3	1	155255850	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1305	155255850	93994771	84	95760											
INSRR	3645	broad.mit.edu	37	chr1	156813925	156813925	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagactttatgatgagggctCagggagaaaagggggtgggg	19	4	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156813925	A	A	156813925	1	1	96	0	1	0	0	0	0	0	0	0	7844	841	29	3		3	INSRR	1	156813925	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1558075	156813925	92436696	85	95761											
ARHGEF11	9826	broad.mit.edu	37	chr1	156908399	156908399	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagagagggcaggaggtgGggacagggggaggagaaaat	23	2	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156908399	A	A	156908399	1	1	96	0	1	0	0	0	0	0	0	0	898	1247	43	4		4	ARHGEF11	1	156908399	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	94474	156908399	92342222	86	95762											
FCRL3	115352	broad.mit.edu	37	chr1	157659957	157659957	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcatgttcaaaacctcCttggtgctagtagaatttgt	10	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157659957	T	T	157659957	1	4	96	0	1	0	0	0	0	0	0	0	5853	696	24	4		4	FCRL3	1	157659957	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	751558	157659957	91590664	87	95763											
OR6Y1	391112	broad.mit.edu	37	chr1	158517680	158517680	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acataccacatctccaggaaGgagaggtggctcaagaagaa	11	9	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517680	T	T	158517680	2	4	96	1	0	0	0	0	0	0	0	1	11307	987	35	2		2	OR6Y1	1	158517680	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	857723	158517680	90732941	88	95764											
SPTA1	6708	broad.mit.edu	37	chr1	158607815	158607815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacatttttgagctggtgGcacatactctatccaggatt	8	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158607815	T	T	158607815	1	4	96	0	1	0	0	0	0	0	0	0	15234	1218	42	3		3	SPTA1	1	158607815	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	90135	158607815	90642806	89	95765											
SPTA1	6708	broad.mit.edu	37	chr1	158644008	158644008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattcatattattaacacGtttaaatgacttctattctt	3	6	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158644008	T	T	158644008	1	4	96	0	1	0	0	0	0	0	0	0	15234	1160	40	3		3	SPTA1	1	158644008	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	36193	158644008	90606613	90	95766											
SPTA1	6708	broad.mit.edu	37	chr1	158646209	158646209	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagaaatcgacatatgaataGatttctattaatatactaat	4	4	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158646209	C	C	158646209	1	2	96	0	1	0	0	0	0	0	0	0	15234	957	33	4		4	SPTA1	1	158646209	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2201	158646209	90604412	91	95767											
MNDA	4332	broad.mit.edu	37	chr1	158812246	158812246	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcacatagctactctgccttGagtctccccagtcttcagta	7	14	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158812246	T	T	158812246	1	4	96	0	1	0	0	0	0	0	0	0	9770	1305	45	3		3	MNDA	1	158812246	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	166037	158812246	90438375	92	95768											
MNDA	4332	broad.mit.edu	37	chr1	158814025	158814025	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atattactgatttgctgtggGaaaactgttttccatattat	7	5	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158814025	C	C	158814025	1	2	96	0	1	0	0	0	0	0	0	0	9770	1189	41	4		4	MNDA	1	158814025	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1779	158814025	90436596	93	95769											
AIM2	9447	broad.mit.edu	37	chr1	159032508	159032508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttttggccttaataaCctggatggagaaaaaaaaca	7	5	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159032508	A	A	159032508	3	1	96	1	0	0	0	0	1	0	0	0	432	521	18	3	29	3	AIM2	1	159032508	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	218483	159032508	90218113	94	95770											
CRP	1401	broad.mit.edu	37	chr1	159684363	159684363	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagttcaggggctagaagtCctagatctcttgccttagag	11	8	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159684363	A	A	159684363	1	1	96	0	1	0	0	0	0	0	0	0	3927	870	30	3		3	CRP	1	159684363	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	651855	159684363	89566258	95	95771											
IGSF8	93185	broad.mit.edu	37	chr1	160062751	160062751	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagggagaggccgggaacgGgcactggctgcttcacgaag	17	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160062751	A	A	160062751	2	1	96	1	0	0	0	0	0	0	0	1	7674	1219	43	4		4	IGSF8	1	160062751	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	378388	160062751	89187870	96	95772											
DCAF8	50717	broad.mit.edu	37	chr1	160192443	160192443	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacaccatactcaccaCgcctcccttgtccccctcca	3	22	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160192443	T	T	160192443	3	4	96	1	0	0	0	0	1	0	0	0	4309	536	19	4	371	4	DCAF8	1	160192443	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	129692	160192443	89058178	97	95773											
DCAF8	50717	broad.mit.edu	37	chr1	160195230	160195230	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagtgaagtgactgccaaGatcacaaagctggtaagtgg	13	6	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160195230	A	A	160195230	1	1	96	0	1	0	0	0	0	0	0	0	4309	957	33	4		4	DCAF8	1	160195230	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2787	160195230	89055391	98	95774											
CD84	8832	broad.mit.edu	37	chr1	160518221	160518221	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggcacgggggaatgccttaGatttgcctcatgctggggaa	15	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160518221	C	C	160518221	1	2	96	0	1	0	0	0	0	0	0	0	3072	957	33	4		4	CD84	1	160518221	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	322991	160518221	88732400	99	95775											
CD244	51744	broad.mit.edu	37	chr1	160810929	160810929	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttatctcataccacatctGtcttgcacatgagcctggtt	6	11	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160810929	C	C	160810929	1	2	96	0	1	0	0	0	0	0	0	0	3017	1392	48	4		4	CD244	1	160810929	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	292708	160810929	88439692	100	95776											
ADCY10	55811	broad.mit.edu	37	chr1	167815034	167815034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggttacagaatcgaatcCtgtggcactcgatcacctca	9	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167815034	A	A	167815034	3	1	96	1	0	0	0	0	1	0	0	0	293	681	24	2	2110	2	ADCY10	1	167815034	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	7004105	167815034	81435587	101	95777											
DCAF6	55827	broad.mit.edu	37	chr1	167944259	167944259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaactacttatgaggtatgGtattattatgattatatgat	9	2	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167944259	T	T	167944259	1	4	96	0	1	0	0	0	0	0	0	0	4307	1276	44	3		3	DCAF6	1	167944259	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	129225	167944259	81306362	102	95778											
XCL2	6846	broad.mit.edu	37	chr1	168510484	168510484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagaaatagtctttcagaGccatgagatcataaatgagc	9	7	3	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168510484	T	T	168510484	1	4	96	0	1	0	0	0	0	0	0	0	17551	986	34	3		3	XCL2	1	168510484	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	566225	168510484	80740137	103	95779											
KIFAP3	22920	broad.mit.edu	37	chr1	170001194	170001194	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctactgataaattctatgaaCaatggcactattaaatttta	4	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170001194	T	T	170001194	1	4	96	0	1	0	0	0	0	0	0	0	8381	493	17	4		4	KIFAP3	1	170001194	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1490710	170001194	79249427	104	95780											
FMO3	2328	broad.mit.edu	37	chr1	171061893	171061893	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctggagcccacctgctttGagaagagcaatgacattggg	14	9	0	3	rs72549320		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171061893	A	A	171061893	3	1	96	1	0	0	0	0	1	0	0	0	6014	1291	45	4	96	4	FMO3	1	171061893	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1060699	171061893	78188728	105	95781											
VAMP4	8674	broad.mit.edu	37	chr1	171673540	171673540	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacttgcctcttagtttcttGaaaaagaagttttgaaagtt	7	5	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171673540	C	C	171673540	1	2	96	0	1	0	0	0	0	0	0	0	17242	1305	45	4		4	VAMP4	1	171673540	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	611647	171673540	77577081	106	95782											
RABGAP1L	9910	broad.mit.edu	37	chr1	174652687	174652687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtatgatgaagacattGggtactgtcaagggcagtct	13	6	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174652687	T	T	174652687	3	4	96	1	0	0	0	0	1	0	0	0	13073	1348	47	2	1906	2	RABGAP1L	1	174652687	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2979147	174652687	74597934	107	95783											
TNR	7143	broad.mit.edu	37	chr1	175332952	175332952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaattgtgatgtcttttgGgggatcaattcctacaagga	11	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175332952	T	T	175332952	3	4	96	1	0	0	0	0	1	0	0	0	16461	1232	43	2	1521	2	TNR	1	175332952	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	680265	175332952	73917669	108	95784											
PAPPA2	60676	broad.mit.edu	37	chr1	176525551	176525551	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagctgggctggacacgcaaGaaatccttggttgagaggga	16	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176525551	C	C	176525551	3	2	96	1	0	0	0	0	1	0	0	0	11527	933	33	4	95	4	PAPPA2	1	176525551	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1192599	176525551	72725070	109	95785											
PAPPA2	60676	broad.mit.edu	37	chr1	176563697	176563697	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccacactgtcagtgacaaAggctgggccctggggatccg	13	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176563697	T	T	176563697	3	4	96	1	0	0	0	0	1	0	0	0	11527	69	3	5	963	5	PAPPA2	1	176563697	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	38146	176563697	72686924	110	95786											
PAPPA2	60676	broad.mit.edu	37	chr1	176563851	176563851	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggacccatgtggcagccactTacgatggacggcacatggcc	13	13	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176563851	A	A	176563851	3	1	96	1	0	0	0	0	1	0	0	0	11527	1754	61	5	1117	5	PAPPA2	1	176563851	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	154	176563851	72686770	111	95787											
RASAL2	9462	broad.mit.edu	37	chr1	178425834	178425834	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgcttattatccaattaGggtgaaaattccttcctaca	5	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178425834	T	T	178425834	5	4	96	1	0	0	0	0	0	0	1	0	13172	1014	35	2	2278	2	RASAL2	1	178425834	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	1861983	178425834	70824787	112	95788											
C1orf125	126859	broad.mit.edu	37	chr1	179478583	179478583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattattcagattattcctGtatttcagtacagaaggttc	6	7	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179478583	T	T	179478583	1	4	96	0	1	0	0	0	0	0	0	0	2013	1392	48	3		3	C1orf125	1	179478583	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1052749	179478583	69772038	113	95789											
MR1	3140	broad.mit.edu	37	chr1	181019024	181019024	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggactcagcgatgccatgGcaggcctggggggtgacata	18	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181019024	A	A	181019024	1	1	96	0	1	0	0	0	0	0	0	0	9846	1218	42	4		4	MR1	1	181019024	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1540441	181019024	68231597	114	95790											
HMCN1	83872	broad.mit.edu	37	chr1	185986059	185986059	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgttttttgttgtataCatttctttgcatgttacatt	8	4	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185986059	G	G	185986059	1	3	96	0	1	0	0	0	0	0	0	0	7287	493	17	4		4	HMCN1	1	185986059	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4967035	185986059	63264562	115	95791											
PLA2G4A	5321	broad.mit.edu	37	chr1	186862034	186862034	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtctcagacatttaaatAcatcactacagattcattga	4	9	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186862034	T	T	186862034	1	4	96	0	1	0	0	0	0	0	0	0	12096	406	14	5		5	PLA2G4A	1	186862034	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	875975	186862034	62388587	116	95792											
RGS1	5996	broad.mit.edu	37	chr1	192544966	192544966	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaagttagacaaaatgcCaggaatgttcttctctgcta	7	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192544966	T	T	192544966	3	4	96	1	0	0	0	0	1	0	0	0	13401	594	21	4	46	4	RGS1	1	192544966	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	5682932	192544966	56705655	117	95793											
RGS13	6003	broad.mit.edu	37	chr1	192613655	192613655	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaatttgcatttacacgtGagtcatttcatcagaagagc	7	7	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192613655	A	A	192613655	1	1	96	0	1	0	0	0	0	0	0	0	13405	1305	45	4		4	RGS13	1	192613655	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	68689	192613655	56636966	118	95794											
CDC73	79577	broad.mit.edu	37	chr1	193219878	193219878	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catttctggaaattgagactCaagctttatgaatttatcaa	6	6	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193219878	T	T	193219878	1	4	96	0	1	0	0	0	0	0	0	0	3115	841	29	4		4	CDC73	1	193219878	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	606223	193219878	56030743	119	95795											
ASPM	259266	broad.mit.edu	37	chr1	197053652	197053652	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actaaattgtagctactcctGaacacatcatttcccttaca	3	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197053652	A	A	197053652	1	1	96	0	1	0	0	0	0	0	0	0	1060	1305	45	4		4	ASPM	1	197053652	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3833774	197053652	52196969	120	95796											
ASPM	259266	broad.mit.edu	37	chr1	197112929	197112929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctttttaatggtatcCcaaagactcctctgcaaaaa	4	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197112929	A	A	197112929	3	1	96	1	0	0	0	0	1	0	0	0	1060	624	22	2	10084	2	ASPM	1	197112929	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	59277	197112929	52137692	121	95797											
CRB1	23418	broad.mit.edu	37	chr1	197192287	197192287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggataatgattgccttggccCtggctgtgattatcacttct	10	9	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197192287	A	A	197192287	1	1	96	0	1	0	0	0	0	0	0	0	3880	696	24	2		2	CRB1	1	197192287	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	79358	197192287	52058334	122	95798											
CRB1	23418	broad.mit.edu	37	chr1	197398542	197398543	+	Intron	DNP	CA	AG	AG													acatttttctatttagttgcCagtgctttttatacctttga							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	197398543	AG	AG	197398542	1	1	96	0	1	0	0	0	0	0	0	0	3880	609	21	2		2	CRB1	1	197398542	Intron	DNP	CA	TCGA-38-4625-01A-01D-1553-08	206255	197398542	51852079	123	95799											
PTPRC	5788	broad.mit.edu	37	chr1	198691572	198691572	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacaatggagactatcctGgagaaccctttattttacat	6	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198691572	T	T	198691572	4	4	96	1	0	0	0	0	0	1	0	0	12905	1349	47	2	1746	2	PTPRC	1	198691572	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1293030	198691572	50559049	124	95800											
PTPRC	5788	broad.mit.edu	37	chr1	198723644	198723644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtttgttcttttttcccCtttccttttctcttctctat	2	13	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198723644	T	T	198723644	1	4	96	0	1	0	0	0	0	0	0	0	12905	696	24	4		4	PTPRC	1	198723644	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	32072	198723644	50526977	125	95801											
NR5A2	2494	broad.mit.edu	37	chr1	200080524	200080524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatggccggaatttaactaGgtcagaagcactcttgtgct	11	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200080524	T	T	200080524	1	4	96	0	1	0	0	0	0	0	0	0	10731	1015	35	2		2	NR5A2	1	200080524	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1356880	200080524	49170097	126	95802											
NR5A2	2494	broad.mit.edu	37	chr1	200143263	200143263	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgcaggctgaagaatacctCtactacaagcacctgaacgg	9	11	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200143263	T	T	200143263	2	4	96	1	0	0	0	0	0	0	0	1	10731	900	32	4		4	NR5A2	1	200143263	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	62739	200143263	49107358	127	95803											
TNNT2	7139	broad.mit.edu	37	chr1	201334198	201334198	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagggcctctgaaggagaccTcacacctagctgggtttgag	14	10	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201334198	A	A	201334198	1	1	96	0	1	0	0	0	0	0	0	0	16454	1566	54	5		5	TNNT2	1	201334198	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1190935	201334198	47916423	128	95804											
SRGAP2	23380	broad.mit.edu	37	chr1	206610201	206610201	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctttggcctaaagaagagaGacagcgtgcttaaatacatg	10	8	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206610201	T	T	206610201	1	4	96	0	1	0	0	0	0	0	0	0	15264	957	33	3		3	SRGAP2	1	206610201	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	5276003	206610201	42640420	129	95805											
CR1	1378	broad.mit.edu	37	chr1	207760745	207760746	+	Missense_Mutation	DNP	CC	AA	AA													ctccaggtcactgtaaaaccCcagagcagtttccatttgcc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	207760746	AA	AA	207760745	3	1	96	1	0	0	0	0	1	0	0	0	3872	623	22	2	5679	2	CR1	1	207760745	Missense_Mutation	DNP	CC	TCGA-38-4625-01A-01D-1553-08	1150544	207760745	41489876	130	95806											
C1orf107	27042	broad.mit.edu	37	chr1	210016686	210016686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaatcatattggcctctgGggaggtaatcttttaacacg	10	7	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210016686	T	T	210016686	1	4	96	0	1	0	0	0	0	0	0	0	2001	1247	43	2		2	C1orf107	1	210016686	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2255941	210016686	39233935	131	95807											
KCNH1	3756	broad.mit.edu	37	chr1	211192527	211192527	+	Frame_Shift_Del	DEL	G	-	-													ttaaaaacacaataatgtaaGatgatgtgagggggagtctt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	211192527	-	-	211192527	7	5	96	1	0	1	0	1	0	0	0	0	8101	932	33	0	2363	0	KCNH1	1	211192527	Frame_Shift_Del	DEL	G	TCGA-38-4625-01A-01D-1553-08	1175841	211192527	38058094	132	95808											
CENPF	1063	broad.mit.edu	37	chr1	214791841	214791841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaagtttattactctctGggaatgtaaggcattgatat	9	4	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214791841	T	T	214791841	1	4	96	0	1	0	0	0	0	0	0	0	3261	1363	47	2		2	CENPF	1	214791841	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3599314	214791841	34458780	133	95809											
CENPF	1063	broad.mit.edu	37	chr1	214830198	214830198	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagaaagaacacgtctaaGattatctgcttcacgatgcc	7	10	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214830198	T	T	214830198	1	4	96	0	1	0	0	0	0	0	0	0	3261	957	33	3		3	CENPF	1	214830198	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	38357	214830198	34420423	134	95810											
USH2A	7399	broad.mit.edu	37	chr1	216256822	216256822	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaatcaggtccatctttGttataaacgaaaagaagcaa	7	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216256822	A	A	216256822	2	1	96	1	0	0	0	0	0	0	0	1	17162	1368	48	4		4	USH2A	1	216256822	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1426624	216256822	32993799	135	95811											
USH2A	7399	broad.mit.edu	37	chr1	216262565	216262565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgttataaaccaatttaCaagtttcaagattatgatcc	4	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216262565	A	A	216262565	1	1	96	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	216262565	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5743	216262565	32988056	136	95812											
USH2A	7399	broad.mit.edu	37	chr1	216538493	216538493	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttatattaaacacatttCagcagtttttattaagtaac	3	5	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216538493	A	A	216538493	1	1	96	0	1	0	0	0	0	0	0	0	17162	841	29	3		3	USH2A	1	216538493	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	275928	216538493	32712128	137	95813											
EPRS	2058	broad.mit.edu	37	chr1	220170738	220170738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcatattaaatgttttcCcacaaaattatttcaaactg	2	7	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220170738	A	A	220170738	1	1	96	0	1	0	0	0	0	0	0	0	5233	638	22	2		2	EPRS	1	220170738	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3632245	220170738	29079883	138	95814											
IARS2	55699	broad.mit.edu	37	chr1	220284293	220284293	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccaaggtataaaaagcatCctgttttaacaggtcgggca	10	8	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220284293	A	A	220284293	1	1	96	0	1	0	0	0	0	0	0	0	7544	870	30	3		3	IARS2	1	220284293	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	113555	220284293	28966328	139	95815											
HLX	3142	broad.mit.edu	37	chr1	221057757	221057757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccccagcgacacggagcGgactgaggggagtgagcgtt	18	11	0	2	rs77213368	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221057757	T	T	221057757	3	4	96	1	0	0	0	0	1	0	0	0	7283	1116	39	1	1192	1	HLX	1	221057757	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	773464	221057757	28192864	140	95816											
NVL	4931	broad.mit.edu	37	chr1	224468739	224468739	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaaaataccacaattgctGaaagatctgagaacatttta	5	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224468739	T	T	224468739	1	4	96	0	1	0	0	0	0	0	0	0	10875	1305	45	3		3	NVL	1	224468739	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3410982	224468739	24781882	141	95817											
GUK1	2987	broad.mit.edu	37	chr1	228333808	228333808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctggagcacccccagtGtgggcagggctgctgggccc	17	13	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228333808	T	T	228333808	1	4	96	0	1	0	0	0	0	0	0	0	6965	1392	48	3		3	GUK1	1	228333808	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3865069	228333808	20916813	142	95818											
OBSCN	84033	broad.mit.edu	37	chr1	228401911	228401912	+	Missense_Mutation	DNP	TG	GT	GT													gctccctcggaagacggcggTgcgcgtgggcgacacggcta							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	228401912	GT	GT	228401911	3	3	96	1	0	0	0	0	1	0	0	0	10907	1696	59	5	1305	5	OBSCN	1	228401911	Missense_Mutation	DNP	TG	TCGA-38-4625-01A-01D-1553-08	68103	228401911	20848710	143	95819											
OBSCN	84033	broad.mit.edu	37	chr1	228475809	228475809	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagaaacaaggaggccacaGaaggggccacggccacgctg	15	11	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228475809	A	A	228475809	3	1	96	1	0	0	0	0	1	0	0	0	10907	943	33	4	10001	4	OBSCN	1	228475809	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	73898	228475809	20774812	144	95820											
HIST3H2BB	128312	broad.mit.edu	37	chr1	228646048	228646048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcaatgacatcttcgagcGcatcgccagcgaggcctccc	10	16	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228646048	T	T	228646048	3	4	96	1	0	0	0	0	1	0	0	0	7250	1087	38	3	220	3	HIST3H2BB	1	228646048	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	170239	228646048	20604573	145	95821											
URB2	9816	broad.mit.edu	37	chr1	229773791	229773791	+	Missense_Mutation	SNP	A	T	T													cgacatttcccaaggaagcgAcaggacgctgctctcccatg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229773791	T	T	229773791	3	4	96	1	0	0	0	0	1	0	0	0	17151	275	10	5	3441	5	URB2	1	229773791	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	1127743	229773791	19476830	146	95822	423	2									
URB2	9816	broad.mit.edu	37	chr1	229773793	229773793	+	Missense_Mutation	SNP	A	T	T													acatttcccaaggaagcgacAggacgctgctctcccatgtt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229773793	T	T	229773793	3	4	96	1	0	0	0	0	1	0	0	0	17151	179	7	5	3443	5	URB2	1	229773793	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	2	229773793	19476828	147	95823	423	2									
LYST	1130	broad.mit.edu	37	chr1	235993715	235993715	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgagttactgtcggtgctCatgaccgagctataaaataa	10	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235993715	T	T	235993715	3	4	96	1	0	0	0	0	1	0	0	0	9216	826	29	4	11606	4	LYST	1	235993715	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	6219922	235993715	13256906	148	95824											
EDARADD	128178	broad.mit.edu	37	chr1	236645629	236645629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgcttgctccgggccCccaccataagtgacttgctc	8	18	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236645629	A	A	236645629	3	1	96	1	0	0	0	0	1	0	0	0	4946	623	22	2	385	2	EDARADD	1	236645629	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	651914	236645629	12604992	149	95825											
ACTN2	88	broad.mit.edu	37	chr1	236912739	236912739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtgtttagtactctgtGttgcaaacccgttaaaatca	7	7	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236912739	T	T	236912739	1	4	96	0	1	0	0	0	0	0	0	0	205	1392	48	3		3	ACTN2	1	236912739	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	267110	236912739	12337882	150	95826											
RYR2	6262	broad.mit.edu	37	chr1	237619789	237619789	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttatgattagtagaTgaaccttcagtcagacttct	6	7	4	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237619789	A	A	237619789	1	1	96	0	1	0	0	0	0	0	0	0	13880	1479	51	5		5	RYR2	1	237619789	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	707050	237619789	11630832	151	95827											
RYR2	6262	broad.mit.edu	37	chr1	237656366	237656366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttgttattgcagacacGtcttgtgaaccatgtcagca	9	9	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237656366	T	T	237656366	3	4	96	1	0	0	0	0	1	0	0	0	13880	1145	40	3	2014	3	RYR2	1	237656366	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	36577	237656366	11594255	152	95828											
RYR2	6262	broad.mit.edu	37	chr1	237780736	237780736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccttaaacatgtcagctGcactcacagccaggaagaca	8	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237780736	T	T	237780736	3	4	96	1	0	0	0	0	1	0	0	0	13880	1319	46	3	6016	3	RYR2	1	237780736	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	124370	237780736	11469885	153	95829											
FMN2	56776	broad.mit.edu	37	chr1	240371460	240371460	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccccctctacccggagcGggcataccccctcctccccc	7	25	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240371460	A	A	240371460	2	1	96	1	0	0	0	0	0	0	0	1	6008	1103	39	4		4	FMN2	1	240371460	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	2590724	240371460	8879161	154	95830											
FH	2271	broad.mit.edu	37	chr1	241669315	241669315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactaacctgtaagtgcagCcacttttgcagcaacctttt	6	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241669315	A	A	241669315	3	1	96	1	0	0	0	0	1	0	0	0	5932	739	26	3	660	3	FH	1	241669315	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1297855	241669315	7581306	155	95831											
OPN3	23596	broad.mit.edu	37	chr1	241760927	241760927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccagatccctttaattcCtaaaaaattcttgttttttt	2	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241760927	A	A	241760927	1	1	96	0	1	0	0	0	0	0	0	0	10975	696	24	2		2	OPN3	1	241760927	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	91612	241760927	7489694	156	95832											
C1orf101	257044	broad.mit.edu	37	chr1	244756638	244756638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacctaaacaaagtcatgGgtttagttttaagtttgaaa	7	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244756638	T	T	244756638	1	4	96	0	1	0	0	0	0	0	0	0	1996	1247	43	2		2	C1orf101	1	244756638	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2995711	244756638	4493983	157	95833											
HNRNPU	3192	broad.mit.edu	37	chr1	245020932	245020932	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cataatagtatttgtgccaaGaatgttatatttccctggat	7	6	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245020932	A	A	245020932	3	1	96	1	0	0	0	0	1	0	0	0	7340	942	33	4	923	4	HNRNPU	1	245020932	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	264294	245020932	4229689	158	95834											
OR2C3	81472	broad.mit.edu	37	chr1	247695885	247695885	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagggcatgagacatgaagCaattacatcagttagcaaac	9	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247695885	G	G	247695885	1	3	96	0	1	0	0	0	0	0	0	0	11087	725	25	4		4	OR2C3	1	247695885	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2674953	247695885	1554736	159	95835											
OR13G1	441933	broad.mit.edu	37	chr1	247835530	247835530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagagtatagagtgcagCtaccaccttgtctctttcaa	7	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247835530	A	A	247835530	3	1	96	1	0	0	0	0	1	0	0	0	11036	797	28	3	113	3	OR13G1	1	247835530	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	139645	247835530	1415091	160	95836											
OR2L13	284521	broad.mit.edu	37	chr1	248138752	248138752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcgacctgtagcacccaCctcactgtagtaattttcta	5	12	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248138752	A	A	248138752	1	1	96	0	1	0	0	0	0	0	0	0	11100	522	18	3		3	OR2L13	1	248138752	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	303222	248138752	1111869	161	95837											
OR2T2	401992	broad.mit.edu	37	chr1	248616110	248616110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggaccatgggcatggaGggtcttctccagaactccac	11	12	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248616110	T	T	248616110	3	4	96	1	0	0	0	0	1	0	0	0	11114	991	35	2	14	2	OR2T2	1	248616110	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	477358	248616110	634511	162	95838											
OR2T11	127077	broad.mit.edu	37	chr1	248789984	248789984	+	Frame_Shift_Del	DEL	C	-	-													gcagaaagccatcgagggagCccccaaaccaggcaccagca							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248789984	-	-	248789984	7	5	96	1	0	1	0	1	0	0	0	0	11112	739	26	0	508	0	OR2T11	1	248789984	Frame_Shift_Del	DEL	C	TCGA-38-4625-01A-01D-1553-08	173874	248789984	460637	163	95839											
ACP1	52	broad.mit.edu	37	chr2	272282	272282	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctaagaaatcatggcattCacacagcccataaagcaaga	7	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	272282	T	T	272282	3	4	96	1	0	0	0	0	1	0	0	0	162	826	29	4	373	4	ACP1	2	272282	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08		272282	242927091	164	95840											
TPO	7173	broad.mit.edu	37	chr2	1491806	1491806	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacctcatgcagctgctgcGggatttgccgagctagcaac	11	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1491806	C	C	1491806	1	2	96	0	1	0	0	0	0	0	0	0	16534	1131	39	4		4	TPO	2	1491806	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1219524	1491806	241707567	165	95841											
PXDN	7837	broad.mit.edu	37	chr2	1691403	1691403	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaagagaaggggcacttaCagttgctctagagaggcaag	14	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1691403	A	A	1691403	5	1	96	1	0	0	0	0	0	0	1	0	12955	492	17	3	4102	3	PXDN	2	1691403	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	199597	1691403	241507970	166	95842											
COLEC11	78989	broad.mit.edu	37	chr2	3665248	3665248	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttatcgaatttctcgatctCagccatatcgggtttgtcag	8	10	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3665248	T	T	3665248	1	4	96	0	1	0	0	0	0	0	0	0	3743	841	29	4		4	COLEC11	2	3665248	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1973845	3665248	239534125	167	95843											
ROCK2	9475	broad.mit.edu	37	chr2	11448622	11448622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccggtactttcttaccaaGgttgccactggaaccaggaa	9	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11448622	A	A	11448622	1	1	96	0	1	0	0	0	0	0	0	0	13629	1015	35	4		4	ROCK2	2	11448622	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	7783374	11448622	231750751	168	95844											
MSGN1	343930	broad.mit.edu	37	chr2	17998016	17998016	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggcggggccagcagtggGggcagcgaaggctgcagtgt	20	10	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17998016	T	T	17998016	2	4	96	1	0	0	0	0	0	0	0	1	9963	1219	43	2		2	MSGN1	2	17998016	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	6549394	17998016	225201357	169	95845											
APOB	338	broad.mit.edu	37	chr2	21234718	21234718	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgccccagagaggccaagCtctgcattcagctcattctc	9	14	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21234718	G	G	21234718	3	3	96	1	0	0	0	0	1	0	0	0	787	796	28	4	8685	4	APOB	2	21234718	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3236702	21234718	221964655	170	95846											
CENPO	79172	broad.mit.edu	37	chr2	25038675	25038676	+	Intron	INS	-	A	A													cgtgggcccaagatcaacttINSaaaagggggatgttttttgt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25038676	A	A	25038675	6	5	96	0	1	1	1	0	0	0	0	0	3269	1769	61	0		0	CENPO	2	25038675	Intron	INS	-	TCGA-38-4625-01A-01D-1553-08	3803957	25038675	218160698	171	95847											
HADHB	3032	broad.mit.edu	37	chr2	26502035	26502035	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgagttctccaccagtgaGaccatgggccactctgcaga	10	13	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26502035	T	T	26502035	3	4	96	1	0	0	0	0	1	0	0	0	7010	933	33	3	693	3	HADHB	2	26502035	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1463360	26502035	216697338	172	95848											
OTOF	9381	broad.mit.edu	37	chr2	26750670	26750670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccagcccgtccaggcCcagcccctcctgccccatcc	8	24	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26750670	A	A	26750670	1	1	96	0	1	0	0	0	0	0	0	0	11397	638	22	2		2	OTOF	2	26750670	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	248635	26750670	216448703	173	95849											
XDH	7498	broad.mit.edu	37	chr2	31628752	31628752	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccccccttctccgtcactCccactccaaagtcaggatac	5	19	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31628752	A	A	31628752	1	1	96	0	1	0	0	0	0	0	0	0	17553	870	30	3		3	XDH	2	31628752	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4878082	31628752	211570621	174	95850											
BIRC6	57448	broad.mit.edu	37	chr2	32626377	32626377	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatcttgctttgggtcggGgagctgccctcattttctag	11	9	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32626377	A	A	32626377	3	1	96	1	0	0	0	0	1	0	0	0	1444	1232	43	4	1207	4	BIRC6	2	32626377	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	997625	32626377	210572996	175	95851											
LTBP1	4052	broad.mit.edu	37	chr2	33335854	33335854	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaccattttcccaagttaTggtatcagagattggaaaca	7	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33335854	C	C	33335854	1	2	96	0	1	0	0	0	0	0	0	0	9160	1479	51	5		5	LTBP1	2	33335854	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	709477	33335854	209863519	176	95852											
LTBP1	4052	broad.mit.edu	37	chr2	33500061	33500061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtactcaggtccaacacCtctgctcccagggccgctgt	10	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33500061	A	A	33500061	3	1	96	1	0	0	0	0	1	0	0	0	9160	681	24	2	2894	2	LTBP1	2	33500061	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	164207	33500061	209699312	177	95853											
HEATR5B	54497	broad.mit.edu	37	chr2	37306243	37306243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataaaacttcaagggcccCtattaaagtaagtacttaca	5	8	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37306243	A	A	37306243	1	1	96	0	1	0	0	0	0	0	0	0	7099	696	24	2		2	HEATR5B	2	37306243	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3806182	37306243	205893130	178	95854											
EIF2AK2	5610	broad.mit.edu	37	chr2	37367025	37367025	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatttattagatagatttaTagttcatatcttgcataatt	4	4	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37367025	C	C	37367025	1	2	96	0	1	0	0	0	0	0	0	0	5037	1421	49	5		5	EIF2AK2	2	37367025	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	60782	37367025	205832348	179	95855											
THADA	63892	broad.mit.edu	37	chr2	43514104	43514104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtactggtgaggacttcaaCgacggccagcctagactctg	12	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43514104	A	A	43514104	3	1	96	1	0	0	0	0	1	0	0	0	15963	536	19	3	770	3	THADA	2	43514104	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	6147079	43514104	199685269	180	95856											
PLEKHH2	130271	broad.mit.edu	37	chr2	43992451	43992451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaattctggtagcctgGgcacttgcaaatggagctca	13	8	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43992451	T	T	43992451	1	4	96	0	1	0	0	0	0	0	0	0	12172	1247	43	2		2	PLEKHH2	2	43992451	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	478347	43992451	199206922	181	95857											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44001325	44001325	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcgtgggaaaggctactgaGagtattcctggagagaggaa	16	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44001325	C	C	44001325	1	2	96	0	1	0	0	0	0	0	0	0	4887	957	33	4		4	DYNC2LI1	2	44001325	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	8874	44001325	199198048	182	95858											
ABCG8	64241	broad.mit.edu	37	chr2	44102186	44102186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctcatcatcaccaggaGggaaggttgctatctggggg	14	10	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44102186	T	T	44102186	1	4	96	0	1	0	0	0	0	0	0	0	72	1015	35	2		2	ABCG8	2	44102186	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	100861	44102186	199097187	183	95859											
PPM1B	5495	broad.mit.edu	37	chr2	44428764	44428764	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagttatgatttcacctaaGcatatctactttatcaactg	6	8	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44428764	C	C	44428764	3	2	96	1	0	0	0	0	1	0	0	0	12437	962	34	4	428	4	PPM1B	2	44428764	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	326578	44428764	198770609	184	95860											
SLC3A1	6519	broad.mit.edu	37	chr2	44547563	44547563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataatatgatttcgggccttCccgctaaaatgagaataagg	9	7	0	2	rs121912696		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44547563	T	T	44547563	3	4	96	1	0	0	0	0	1	0	0	0	14740	855	30	4	1881	4	SLC3A1	2	44547563	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	118799	44547563	198651810	185	95861											
C2orf34	79823	broad.mit.edu	37	chr2	44931341	44931341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgaagttgaaatagcttGtactgaacattatttttaaa	7	3	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44931341	T	T	44931341	1	4	96	0	1	0	0	0	0	0	0	0	2185	1392	48	3		3	C2orf34	2	44931341	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	383778	44931341	198268032	186	95862											
MSH2	4436	broad.mit.edu	37	chr2	47656863	47656863	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaatattttacattaattCaagttaatttatttcagatt	2	3	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47656863	T	T	47656863	1	4	96	0	1	0	0	0	0	0	0	0	9964	841	29	4		4	MSH2	2	47656863	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2725522	47656863	195542510	187	95863											
BCL11A	53335	broad.mit.edu	37	chr2	60679831	60679831	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggttggagacagaggaggggGaaaaaaaaagtacaggtgtg	18	2	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60679831	C	C	60679831	1	2	96	0	1	0	0	0	0	0	0	0	1368	1189	41	4		4	BCL11A	2	60679831	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	13022968	60679831	182519542	188	95864											
REL	5966	broad.mit.edu	37	chr2	61145520	61145520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttggtttcttAttgactagatgacatagaag	7	3	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61145520	G	G	61145520	1	3	96	0	1	0	0	0	0	0	0	0	13323	464	16	5		5	REL	2	61145520	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	465689	61145520	182053853	189	95865											
AFTPH	54812	broad.mit.edu	37	chr2	64778576	64778577	+	5'UTR	DNP	GG	AT	AT													ttctttttttcttttttacaGgtgtaaattaattatttgaa							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	64778577	AT	AT	64778576	1	1	96	0	1	0	0	0	0	0	0	0	364	1014	35	4		4	AFTPH	2	64778576	5'UTR	DNP	GG	TCGA-38-4625-01A-01D-1553-08	3633056	64778576	178420797	190	95866											
ADD2	119	broad.mit.edu	37	chr2	70901768	70901768	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgagctctcccctccaccCtgggggacttggaagcaagg	12	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70901768	T	T	70901768	1	4	96	0	1	0	0	0	0	0	0	0	305	696	24	4		4	ADD2	2	70901768	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	6123192	70901768	172297605	191	95867											
CLEC4F	165530	broad.mit.edu	37	chr2	71043138	71043138	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacttactttgggttctttGtagctgttcctgtgaagtaa	9	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71043138	C	C	71043138	3	2	96	1	0	0	0	0	1	0	0	0	3548	1386	48	4	410	4	CLEC4F	2	71043138	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	141370	71043138	172156235	192	95868											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71376433	71376433	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagagcgaaggaaaaagaaAtatcaaaagcgtatgaaaat	10	4	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71376433	T	T	71376433	3	4	96	1	0	0	0	0	1	0	0	0	9819	98	4	5	1784	5	MPHOSPH10	2	71376433	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	333295	71376433	171822940	193	95869											
ZNF638	27332	broad.mit.edu	37	chr2	71650950	71650950	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaagaaactttcagccaagGaatttggtctgcttaaaccc	7	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71650950	A	A	71650950	3	1	96	1	0	0	0	0	1	0	0	0	18182	1175	41	4	4388	4	ZNF638	2	71650950	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	274517	71650950	171548423	194	95870											
DYSF	8291	broad.mit.edu	37	chr2	71762366	71762366	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttctatcttcaaaaggactCttctcccaacacgcctctat	4	14	6	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71762366	A	A	71762366	1	1	96	0	1	0	0	0	0	0	0	0	4899	928	32	3		3	DYSF	2	71762366	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	111416	71762366	171437007	195	95871											
DYSF	8291	broad.mit.edu	37	chr2	71801371	71801371	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgagggctgggagtacgcctCtctttttggctggaagttcc	14	10	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71801371	A	A	71801371	3	1	96	1	0	0	0	0	1	0	0	0	4899	913	32	3	3528	3	DYSF	2	71801371	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	39005	71801371	171398002	196	95872											
NAT8B	51471	broad.mit.edu	37	chr2	73928090	73928090	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgcccaccaccttctcttCagattcacccacccagaagc	5	18	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73928090	G	G	73928090	3	3	96	1	0	0	0	0	1	0	0	0	10274	835	29	4	344	4	NAT8B	2	73928090	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2126719	73928090	169271283	197	95873											
C2orf78	388960	broad.mit.edu	37	chr2	74041303	74041303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaccagtctctacttctgGgatgtattactctgtgtctt	7	11	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74041303	T	T	74041303	3	4	96	1	0	0	0	0	1	0	0	0	2217	1232	43	2	803	2	C2orf78	2	74041303	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	113213	74041303	169158070	198	95874											
STAMBP	10617	broad.mit.edu	37	chr2	74074993	74074993	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcattaagctttggtcacAgaaacccatctgataagtat	6	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74074993	T	T	74074993	1	4	96	0	1	0	0	0	0	0	0	0	15368	203	7	5		5	STAMBP	2	74074993	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	33690	74074993	169124380	199	95875											
DQX1	165545	broad.mit.edu	37	chr2	74747182	74747183	+	Intron	DNP	GG	TT	TT													ctggaggcagaagagtggaaGgtagaatctgccatttggga							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	74747183	TT	TT	74747182	1	4	96	0	1	0	0	0	0	0	0	0	4791	1015	35	2		2	DQX1	2	74747182	Intron	DNP	GG	TCGA-38-4625-01A-01D-1553-08	672189	74747182	168452191	200	95876											
CTNNA2	1496	broad.mit.edu	37	chr2	80085026	80085026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtggcagaaataccacCtggtcatcagagttttgcaa	11	8	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80085026	A	A	80085026	1	1	96	0	1	0	0	0	0	0	0	0	4047	696	24	2		2	CTNNA2	2	80085026	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5337844	80085026	163114347	201	95877											
CTNNA2	1496	broad.mit.edu	37	chr2	80816440	80816440	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgcaggccatcatggcGcaactaccgcaggaggagaa	12	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80816440	T	T	80816440	2	4	96	1	0	0	0	0	0	0	0	1	4047	1074	38	3		3	CTNNA2	2	80816440	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	731414	80816440	162382933	202	95878											
USP39	10713	broad.mit.edu	37	chr2	85875930	85875930	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaccaaccagcagggggcttGaaggaggcgtctagggcttt	15	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85875930	C	C	85875930	4	2	96	1	0	0	0	0	0	0	0	0	17197	1285	45	4	1747	4	USP39	2	85875930	Nonstop_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5059490	85875930	157323443	203	95879											
SFTPB	6439	broad.mit.edu	37	chr2	85894336	85894336	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccaaggtggaggacacatGagtgggggaggctcccagct	16	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85894336	C	C	85894336	1	2	96	0	1	0	0	0	0	0	0	0	14304	1305	45	4		4	SFTPB	2	85894336	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	18406	85894336	157305037	204	95880											
RMND5A	64795	broad.mit.edu	37	chr2	87106022	87106022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtgtttcaaattttgggGgggttttgttggagaacatt	13	3	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87106022	T	T	87106022	1	4	96	0	1	0	0	0	0	0	0	0	13508	1247	43	2		2	RMND5A	2	87106022	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1211686	87106022	156093351	205	95881											
RMND5A	64795	broad.mit.edu	37	chr2	87866205	87866205	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacaccttaactgtagcatCctctgaagcagagaccataa	6	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87866205	T	T	87866205	1	4	96	0	1	0	0	0	0	0	0	0	13508	870	30	4		4	RMND5A	2	87866205	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	760183	87866205	155333168	206	95882											
FABP1	2168	broad.mit.edu	37	chr2	88422681	88422681	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttgtattgtaaaaaacaAaattaagcataaaaaacaaa	4	3	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88422681	T	T	88422681	1	4	96	0	1	0	0	0	0	0	0	0	5401	29	1	5		5	FABP1	2	88422681	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	556476	88422681	154776692	207	95883											
C2orf51	200523	broad.mit.edu	37	chr2	88828700	88828700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaaagacctgggactccCcggcttcttcccatcacagg	9	16	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88828700	A	A	88828700	3	1	96	1	0	0	0	0	1	0	0	0	2195	623	22	2	261	2	C2orf51	2	88828700	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	406019	88828700	154370673	208	95884											
PROM2	150696	broad.mit.edu	37	chr2	95953256	95953256	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactgattccctgctccatcGgaccagctgttcaccctgct	8	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95953256	C	C	95953256	1	2	96	0	1	0	0	0	0	0	0	0	12662	1131	39	4		4	PROM2	2	95953256	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	7124556	95953256	147246117	209	95885											
C2orf49	79074	broad.mit.edu	37	chr2	105959692	105959692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccatggtaagtatgggGgtggtttccatgctggtaag	17	5	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105959692	T	T	105959692	1	4	96	0	1	0	0	0	0	0	0	0	2193	1247	43	2		2	C2orf49	2	105959692	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	10006436	105959692	137239681	210	95886											
GCC2	9648	broad.mit.edu	37	chr2	109086647	109086647	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaacaatgtgaggcaagtGaaaagaacatccagaagaaa	9	5	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109086647	A	A	109086647	3	1	96	1	0	0	0	0	1	0	0	0	6348	1291	45	4	884	4	GCC2	2	109086647	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3126955	109086647	134112726	211	95887											
CKAP2L	150468	broad.mit.edu	37	chr2	113513459	113513459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaaaaattacttaggagCcattatttatggcctatttc	6	6	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113513459	A	A	113513459	1	1	96	0	1	0	0	0	0	0	0	0	3474	754	26	3		3	CKAP2L	2	113513459	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4426812	113513459	129685914	212	95888											
IL1F10	84639	broad.mit.edu	37	chr2	113832767	113832767	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacaaaggtggtgaagaGgccacacgcttcaccttctt	10	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113832767	A	A	113832767	2	1	96	1	0	0	0	0	0	0	0	1	7722	991	35	4		4	IL1F10	2	113832767	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	319308	113832767	129366606	213	95889											
DPP10	57628	broad.mit.edu	37	chr2	116447469	116447469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactccgtcttgcagtacgCggcctggggtgtccaagggc	16	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116447469	T	T	116447469	3	4	96	1	0	0	0	0	1	0	0	0	4767	768	27	4	745	4	DPP10	2	116447469	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2614702	116447469	126751904	214	95890											
C2orf76	130355	broad.mit.edu	37	chr2	120069237	120069237	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgtcttctttcagcaGgagtctttcgtcatcttcca	8	11	6	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120069237	A	A	120069237	2	1	96	1	0	0	0	0	0	0	0	1	2215	991	35	4		4	C2orf76	2	120069237	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	3621768	120069237	123130136	215	95891											
GLI2	2736	broad.mit.edu	37	chr2	121736178	121736178	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtgagtggccttctccccAcccccgccgcagcatcaaga	10	18	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121736178	C	C	121736178	1	2	96	0	1	0	0	0	0	0	0	0	6502	174	6	5		5	GLI2	2	121736178	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1666941	121736178	121463195	216	95892											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521465	125521465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttttccctgcagtgtgcCctagtcttgaaaattatcca	6	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521465	A	A	125521465	1	1	96	0	1	0	0	0	0	0	0	0	3682	638	22	2		2	CNTNAP5	2	125521465	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3785287	125521465	117677908	217	95893											
POLR2D	5433	broad.mit.edu	37	chr2	128608189	128608189	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattagagccttggactcctCagcagtctctgggcaaaggt	12	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128608189	T	T	128608189	3	4	96	1	0	0	0	0	1	0	0	0	12312	835	29	4	111	4	POLR2D	2	128608189	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3086724	128608189	114591184	218	95894											
UGGT1	56886	broad.mit.edu	37	chr2	128870688	128870688	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattgttcaaaggagatcaCagatatccctcgtctaatcc	6	10	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128870688	T	T	128870688	2	4	96	1	0	0	0	0	0	0	0	1	17067	477	17	4		4	UGGT1	2	128870688	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	262499	128870688	114328685	219	95895											
POTEF	728378	broad.mit.edu	37	chr2	130877729	130877729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgtcatcgtagtctccCcaagcgcccaccttgctctt	7	17	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130877729	A	A	130877729	3	1	96	1	0	0	0	0	1	0	0	0	12361	624	22	2	2927	2	POTEF	2	130877729	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2007041	130877729	112321644	220	95896											
FAM168B	130074	broad.mit.edu	37	chr2	131840263	131840263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggaatttagccaagcaCttttgctctcagatttttct	7	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131840263	A	A	131840263	1	1	96	0	1	0	0	0	0	0	0	0	5531	580	20	3		3	FAM168B	2	131840263	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	962534	131840263	111359110	221	95897											
PLEKHB2	55041	broad.mit.edu	37	chr2	132109545	132109545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggggttgaggggagcaGgagatgccctccccaccagc	18	11	0	2	rs117900193	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132109545	T	T	132109545	1	4	96	0	1	0	0	0	0	0	0	0	12160	1015	35	2		2	PLEKHB2	2	132109545	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	269282	132109545	111089828	222	95898											
GPR39	2863	broad.mit.edu	37	chr2	133174633	133174633	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcatggcttcacccagcctCccgggcagtgactgctccca	9	18	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133174633	T	T	133174633	2	4	96	1	0	0	0	0	0	0	0	1	6758	842	30	4		4	GPR39	2	133174633	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1065088	133174633	110024740	223	95899											
LYPD1	116372	broad.mit.edu	37	chr2	133427484	133427484	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacaatccgcaaaaagttgCcgcgatgcctaggacccaca	9	13	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133427484	T	T	133427484	3	4	96	1	0	0	0	0	1	0	0	0	9197	739	26	4	415	4	LYPD1	2	133427484	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	252851	133427484	109771889	224	95900											
MGAT5	4249	broad.mit.edu	37	chr2	135076304	135076304	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctctttttttatttacctCagtgaggtgagtagctttct	8	7	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135076304	T	T	135076304	2	4	96	1	0	0	0	0	0	0	0	1	9641	813	29	4		4	MGAT5	2	135076304	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1648820	135076304	108123069	225	95901											
YSK4	80122	broad.mit.edu	37	chr2	135744679	135744679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattttcttttgaaacctgGgcaattgccaaggcctgggg	12	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135744679	T	T	135744679	3	4	96	1	0	0	0	0	1	0	0	0	17622	1232	43	2	2239	2	YSK4	2	135744679	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	668375	135744679	107454694	226	95902											
ZRANB3	84083	broad.mit.edu	37	chr2	136103032	136103032	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggcgatgggagtgagactCtgtctcaaaaaaaaaaagaa	12	5	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136103032	A	A	136103032	1	1	96	0	1	0	0	0	0	0	0	0	18353	928	32	3		3	ZRANB3	2	136103032	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	358353	136103032	107096341	227	95903											
UBXN4	23190	broad.mit.edu	37	chr2	136511140	136511140	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagttttcacaaatctgtAtcctttcagtaaagaatggc	6	8	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136511140	G	G	136511140	1	3	96	0	1	0	0	0	0	0	0	0	17042	464	16	5		5	UBXN4	2	136511140	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	408108	136511140	106688233	228	95904											
MCM6	4175	broad.mit.edu	37	chr2	136633878	136633878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcacttctcggccacctcgtCgcggacctccaggtgctggc	12	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136633878	A	A	136633878	3	1	96	1	0	0	0	0	1	0	0	0	9484	884	31	3	2475	3	MCM6	2	136633878	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	122738	136633878	106565495	229	95905											
LRP1B	53353	broad.mit.edu	37	chr2	141092221	141092221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctcttcagaccacgtgcCtcagaatcaccccagagtct	8	15	5	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141092221	T	T	141092221	1	4	96	0	1	0	0	0	0	0	0	0	9042	696	24	4		4	LRP1B	2	141092221	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4458343	141092221	102107152	230	95906											
LRP1B	53353	broad.mit.edu	37	chr2	141201815	141201815	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaatttatctacatcatatGaatttatgaagtatagtact	4	5	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141201815	A	A	141201815	1	1	96	0	1	0	0	0	0	0	0	0	9042	1305	45	4		4	LRP1B	2	141201815	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	109594	141201815	101997558	231	95907											
LRP1B	53353	broad.mit.edu	37	chr2	141597485	141597485	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaatattttctttcaggatCtagatcaaaggtatattgta	6	4	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141597485	G	G	141597485	1	3	96	0	1	0	0	0	0	0	0	0	9042	928	32	4		4	LRP1B	2	141597485	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	395670	141597485	101601888	232	95908											
LRP1B	53353	broad.mit.edu	37	chr2	141665495	141665495	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaatcctttttcccattGcagagtttctctggctgcag	9	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141665495	T	T	141665495	4	4	96	1	0	0	0	0	0	1	0	0	9042	1311	46	3	10608	3	LRP1B	2	141665495	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	68010	141665495	101533878	233	95909											
LRP1B	53353	broad.mit.edu	37	chr2	141708032	141708032	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaagaaattttttcttatGaaatatctaactggtttctg	6	4	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141708032	A	A	141708032	1	1	96	0	1	0	0	0	0	0	0	0	9042	1305	45	4		4	LRP1B	2	141708032	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	42537	141708032	101491341	234	95910											
GTDC1	79712	broad.mit.edu	37	chr2	144714835	144714835	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacagtacttggaaatagtCatctttgctgggtaagtagc	11	7	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144714835	A	A	144714835	3	1	96	1	0	0	0	0	1	0	0	0	6916	826	29	3	335	3	GTDC1	2	144714835	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3006803	144714835	98484538	235	95911											
EPC2	26122	broad.mit.edu	37	chr2	149542268	149542268	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acattatactccaccaatatGgctttatcatccagcccagg	5	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149542268	C	C	149542268	3	2	96	1	0	0	0	0	1	0	0	0	5203	1348	47	4	2099	4	EPC2	2	149542268	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4827433	149542268	93657105	236	95912											
RIF1	55183	broad.mit.edu	37	chr2	152317652	152317652	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttattttttcaaatctgcagCtgaaacttgaatcttcgtct	5	8	4	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152317652	G	G	152317652	3	3	96	1	0	0	0	0	1	0	0	0	13468	811	28	4	3178	4	RIF1	2	152317652	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2775384	152317652	90881721	237	95913											
STAM2	10254	broad.mit.edu	37	chr2	152980525	152980525	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atatatttaaaatgttaaaaGacttaaaggaaagaaactat	5	2	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152980525	T	T	152980525	1	4	96	0	1	0	0	0	0	0	0	0	15367	957	33	3		3	STAM2	2	152980525	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	662873	152980525	90218848	238	95914											
ACVR1	90	broad.mit.edu	37	chr2	158627146	158627146	+	Intron	DEL	A	-	-													ccctccattgcttactggagAaactcagcttgggaatataa							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158627146	-	-	158627146	6	5	96	0	1	1	0	1	0	0	0	0	220	261	9	0		0	ACVR1	2	158627146	Intron	DEL	A	TCGA-38-4625-01A-01D-1553-08	5646621	158627146	84572227	239	95915											
CCDC148	130940	broad.mit.edu	37	chr2	159196804	159196804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatgtgggtgtgaatgctGcaaagtgtgatgctgtctgt	14	4	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159196804	T	T	159196804	3	4	96	1	0	0	0	0	1	0	0	0	2808	1328	46	3	1431	3	CCDC148	2	159196804	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	569658	159196804	84002569	240	95916											
TBR1	10716	broad.mit.edu	37	chr2	162279909	162279909	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggctgtgacatggaccgccTgaccccctcgcccaacgact	10	18	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162279909	A	A	162279909	3	1	96	1	0	0	0	0	1	0	0	0	15769	1580	55	5	1242	5	TBR1	2	162279909	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	3083105	162279909	80919464	241	95917											
GCG	2641	broad.mit.edu	37	chr2	163005716	163005716	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtcagaacacagaatgGgggtagggtgaggggggcag	20	5	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163005716	C	C	163005716	1	2	96	0	1	0	0	0	0	0	0	0	6352	1247	43	4		4	GCG	2	163005716	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	725807	163005716	80193657	242	95918											
SCN3A	6328	broad.mit.edu	37	chr2	165952085	165952085	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagattcagagtgaagaatGacccaaagatgataaagatg	10	4	1	8			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165952085	T	T	165952085	4	4	96	1	0	0	0	0	0	1	0	0	14031	1294	45	3	1651	3	SCN3A	2	165952085	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2946369	165952085	77247288	243	95919											
TTC21B	79809	broad.mit.edu	37	chr2	166747254	166747254	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgttgaattattttgaaaTgtacatttttttttactaca	4	4	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166747254	C	C	166747254	1	2	96	0	1	0	0	0	0	0	0	0	16814	1479	51	5		5	TTC21B	2	166747254	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	795169	166747254	76452119	244	95920											
XIRP2	129446	broad.mit.edu	37	chr2	168099835	168099835	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatgcagagaaaattcctGagctagccagaggagatgtc	11	7	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168099835	A	A	168099835	3	1	96	1	0	0	0	0	1	0	0	0	17557	1291	45	4	1963	4	XIRP2	2	168099835	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1352581	168099835	75099538	245	95921											
PPIG	9360	broad.mit.edu	37	chr2	170493101	170493101	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagaagaaattcagaaaaaGatgacaagtataaaaacaaa	6	4	2	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170493101	T	T	170493101	3	4	96	1	0	0	0	0	1	0	0	0	12425	942	33	3	1379	3	PPIG	2	170493101	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2393266	170493101	72706272	246	95922											
GAD1	2571	broad.mit.edu	37	chr2	171700608	171700608	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catggaacaaataacacttaAgaagatgagagagatagttg	10	4	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171700608	T	T	171700608	3	4	96	1	0	0	0	0	1	0	0	0	6239	72	3	5	755	5	GAD1	2	171700608	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	1207507	171700608	71498765	247	95923											
DCAF17	80067	broad.mit.edu	37	chr2	172314297	172314297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtatgagaatccagtgGcttactgttcactcctaata	7	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172314297	T	T	172314297	1	4	96	0	1	0	0	0	0	0	0	0	4302	1218	42	3		3	DCAF17	2	172314297	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	613689	172314297	70885076	248	95924											
DYNC1I2	1781	broad.mit.edu	37	chr2	172586209	172586209	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctaacattttcacttttAtgaaattagcaaagctggaa	5	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172586209	G	G	172586209	1	3	96	0	1	0	0	0	0	0	0	0	4883	464	16	5		5	DYNC1I2	2	172586209	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	271912	172586209	70613164	249	95925											
CDCA7	83879	broad.mit.edu	37	chr2	174231809	174231809	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccataaagaaggggttaaatGtaatgtagataagttggtgg	13	2	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174231809	A	A	174231809	1	1	96	0	1	0	0	0	0	0	0	0	3120	1392	48	4		4	CDCA7	2	174231809	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1645600	174231809	68967564	250	95926											
GPR155	151556	broad.mit.edu	37	chr2	175324842	175324842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgaaaaaaagatatcaGgccacttttcacaacttcat	5	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175324842	T	T	175324842	1	4	96	0	1	0	0	0	0	0	0	0	6725	1015	35	2		2	GPR155	2	175324842	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1093033	175324842	67874531	251	95927											
ATF2	1386	broad.mit.edu	37	chr2	175939289	175939289	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtctttccttgatttccctTtgaagtcactaatgagtatc	7	9	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175939289	C	C	175939289	1	2	96	0	1	0	0	0	0	0	0	0	1084	1856	64	5		5	ATF2	2	175939289	3'UTR	SNP	T	TCGA-38-4625-01A-01D-1553-08	614447	175939289	67260084	252	95928											
TTN	7273	broad.mit.edu	37	chr2	179411766	179411766	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cattataggtcttgaagcttCgctggccttgctaacacctg	9	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179411766	T	T	179411766	3	4	96	1	0	0	0	0	1	0	0	0	16861	893	31	4	13585	4	TTN	2	179411766	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3472477	179411766	63787607	253	95929											
TTN	7273	broad.mit.edu	37	chr2	179428592	179428592	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtagttaagggcctgtacctCagttgaaacctgggtccaag	12	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179428592	T	T	179428592	3	4	96	1	0	0	0	0	1	0	0	0	16861	835	29	4	25860	4	TTN	2	179428592	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	16826	179428592	63770781	254	95930											
TTN	7273	broad.mit.edu	37	chr2	179435906	179435906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcccacgatgttctctgCagagactctaaattcatatt	6	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179435906	A	A	179435906	3	1	96	1	0	0	0	0	1	0	0	0	16861	710	25	3	33174	3	TTN	2	179435906	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	7314	179435906	63763467	255	95931											
TTN	7273	broad.mit.edu	37	chr2	179571692	179571692	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggtttgtctgaaaaaacAtttacatgttttgttactac	7	6	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179571692	G	G	179571692	1	3	96	0	1	0	0	0	0	0	0	0	16861	232	8	5		5	TTN	2	179571692	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	135786	179571692	63627681	256	95932											
CCDC141	285025	broad.mit.edu	37	chr2	179742556	179742556	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttgggcttcaggactggtCtaggttgaatgaagctaaag	14	5	2	2	rs13422491	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179742556	A	A	179742556	1	1	96	0	1	0	0	0	0	0	0	0	2801	928	32	3		3	CCDC141	2	179742556	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	170864	179742556	63456817	257	95933											
SSFA2	6744	broad.mit.edu	37	chr2	182794337	182794337	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggaattatcaatgatatGcactggtggaggtgttattt	11	4	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182794337	T	T	182794337	1	4	96	0	1	0	0	0	0	0	0	0	15301	1319	46	3		3	SSFA2	2	182794337	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	3051781	182794337	60405036	258	95934											
ZNF804A	91752	broad.mit.edu	37	chr2	185803511	185803511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgcttcagccacaccaaCagtttctttcccaaatccca	4	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803511	A	A	185803511	3	1	96	1	0	0	0	0	1	0	0	0	18299	479	17	3	3402	3	ZNF804A	2	185803511	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3009174	185803511	57395862	259	95935											
ITGAV	3685	broad.mit.edu	37	chr2	187506203	187506203	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaggtctcagtgtctctAcagagagcttcaggagactt	13	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187506203	G	G	187506203	2	3	96	1	0	0	0	0	0	0	0	1	7958	378	14	5		5	ITGAV	2	187506203	Silent	SNP	A	TCGA-38-4625-01A-01D-1553-08	1702692	187506203	55693170	260	95936											
ITGAV	3685	broad.mit.edu	37	chr2	187532439	187532439	+	Frame_Shift_Del	DEL	G	-	-													ctttcttccgattccaaactGggagcacaaggagaaccctg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	187532439	-	-	187532439	7	5	96	1	0	1	0	1	0	0	0	0	7958	1357	47	0	2514	0	ITGAV	2	187532439	Frame_Shift_Del	DEL	G	TCGA-38-4625-01A-01D-1553-08	26236	187532439	55666934	261	95937											
COL5A2	1290	broad.mit.edu	37	chr2	189927869	189927869	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatgaggatcatgatgagGtggccaacatattatacact	9	7	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189927869	A	A	189927869	1	1	96	0	1	0	0	0	0	0	0	0	3729	1276	44	4		4	COL5A2	2	189927869	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2395430	189927869	53271504	262	95938											
PLCL1	5334	broad.mit.edu	37	chr2	198949706	198949706	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctgaatacccactcattCtttgcttgggaaatcactgc	6	12	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198949706	T	T	198949706	3	4	96	1	0	0	0	0	1	0	0	0	12134	913	32	4	1471	4	PLCL1	2	198949706	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	9021837	198949706	44249667	263	95939											
CASP10	843	broad.mit.edu	37	chr2	202074065	202074065	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctaaactctttttcatcCaggcctgccaaggtgaagag	8	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202074065	T	T	202074065	4	4	96	1	0	0	0	0	0	1	0	0	2695	595	21	4	1225	4	CASP10	2	202074065	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3124359	202074065	41125308	264	95940											
TRAK2	66008	broad.mit.edu	37	chr2	202275714	202275714	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggcatgttgaatcctgaaGtctgaaagcccatattgaca	10	9	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202275714	A	A	202275714	1	1	96	0	1	0	0	0	0	0	0	0	16574	1044	36	4		4	TRAK2	2	202275714	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	201649	202275714	40923659	265	95941											
ZDBF2	57683	broad.mit.edu	37	chr2	207172542	207172542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttaaaaaaatagaccaatGgaaggaagaggttattggcc	12	4	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207172542	T	T	207172542	3	4	96	1	0	0	0	0	1	0	0	0	17725	1357	47	2	3300	2	ZDBF2	2	207172542	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4896828	207172542	36026831	266	95942											
MAP2	4133	broad.mit.edu	37	chr2	210558138	210558138	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggaagaaaaggaggccaTaaatcaagagactgtgcagc	13	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210558138	A	A	210558138	3	1	96	1	0	0	0	0	1	0	0	0	9327	1406	49	5	1258	5	MAP2	2	210558138	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	3385596	210558138	32641235	267	95943											
ERBB4	2066	broad.mit.edu	37	chr2	212568781	212568781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttaatgcacacacaatgCtcctcttgaaatctgtgagc	7	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212568781	A	A	212568781	1	1	96	0	1	0	0	0	0	0	0	0	5251	812	28	3		3	ERBB4	2	212568781	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2010643	212568781	30630592	268	95944											
VWC2L	402117	broad.mit.edu	37	chr2	215301400	215301400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccagcaatgaagttcaCtgtgttgtagcagactgcgc	12	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215301400	A	A	215301400	3	1	96	1	0	0	0	0	1	0	0	0	17371	564	20	3	444	3	VWC2L	2	215301400	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2732619	215301400	27897973	269	95945											
BARD1	580	broad.mit.edu	37	chr2	215610601	215610601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaatataaaaggagatacCagtgttaaaaacattagacg	8	4	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215610601	A	A	215610601	1	1	96	0	1	0	0	0	0	0	0	0	1317	609	21	2		2	BARD1	2	215610601	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	309201	215610601	27588772	270	95946											
XRCC5	7520	broad.mit.edu	37	chr2	217057340	217057340	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctgacttgctgcctcctCtaccccaacttgctaccaca	5	18	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217057340	G	G	217057340	1	3	96	0	1	0	0	0	0	0	0	0	17583	928	32	4		4	XRCC5	2	217057340	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1446739	217057340	26142033	271	95947											
SMARCAL1	50485	broad.mit.edu	37	chr2	217340026	217340026	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcatcgatggctccacctCatcagctgagcgggaggacc	12	15	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217340026	T	T	217340026	3	4	96	1	0	0	0	0	1	0	0	0	14887	838	29	4	2329	4	SMARCAL1	2	217340026	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	282686	217340026	25859347	272	95948											
CXCR1	3577	broad.mit.edu	37	chr2	219029412	219029412	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttggatggtaagcctggcGgaaaaggaagaagggcaggg	19	4	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219029412	A	A	219029412	3	1	96	1	0	0	0	0	1	0	0	0	4123	1116	39	4	533	4	CXCR1	2	219029412	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1689386	219029412	24169961	273	95949											
DNAJB2	3300	broad.mit.edu	37	chr2	220147942	220147942	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctttgtccaaggacgccGcatcaccacacgcaggtgag	10	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220147942	A	A	220147942	3	1	96	1	0	0	0	0	1	0	0	0	4660	1087	38	4	555	4	DNAJB2	2	220147942	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1118530	220147942	23051431	274	95950											
DES	1674	broad.mit.edu	37	chr2	220288598	220288598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggccaggagtccagcatGggcactgcccaaggccagcc	15	14	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220288598	T	T	220288598	1	4	96	0	1	0	0	0	0	0	0	0	4489	1363	47	2		2	DES	2	220288598	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	140656	220288598	22910775	275	95951											
SPEG	10290	broad.mit.edu	37	chr2	220312669	220312669	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggaggccccctgaatcctCtacccttctccatcttggtt	8	15	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220312669	G	G	220312669	1	3	96	0	1	0	0	0	0	0	0	0	15154	928	32	4		4	SPEG	2	220312669	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	24071	220312669	22886704	276	95952											
SLC4A3	6508	broad.mit.edu	37	chr2	220500015	220500015	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcatgaggctgcctaccAggcagatgaccggcaagacc	12	12	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220500015	T	T	220500015	3	4	96	1	0	0	0	0	1	0	0	0	14769	188	7	5	1896	5	SLC4A3	2	220500015	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	187346	220500015	22699358	277	95953											
DOCK10	55619	broad.mit.edu	37	chr2	225695309	225695309	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatcgattttaggataatTgcaaagaagaaccaggaatg	10	6	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225695309	A	A	225695309	2	1	96	1	0	0	0	0	0	0	0	1	4725	1799	63	5		5	DOCK10	2	225695309	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	5195294	225695309	17504064	278	95954											
SP110	3431	broad.mit.edu	37	chr2	231076245	231076245	+	Frame_Shift_Del	DEL	G	-	-													gtcttctttatctcttatttGggggatcaggttgtcactgg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	231076245	-	-	231076245	7	5	96	1	0	1	0	1	0	0	0	0	15075	1357	47	0	1570	0	SP110	2	231076245	Frame_Shift_Del	DEL	G	TCGA-38-4625-01A-01D-1553-08	5380936	231076245	12123128	279	95955											
SP100	6672	broad.mit.edu	37	chr2	231331929	231331929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcaagcatggtgagaaGggtaagaacagctcccttga	13	7	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231331929	T	T	231331929	3	4	96	1	0	0	0	0	1	0	0	0	15074	1014	35	2	1340	2	SP100	2	231331929	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	255684	231331929	11867444	280	95956											
UGT1A5	54579	broad.mit.edu	37	chr2	234676909	234676909	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcacccatgctggttcccaTggtgtttatgaaagcatatg	9	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234676909	A	A	234676909	3	1	96	1	0	0	0	0	1	0	0	0	17074	1461	51	5	1145	5	UGT1A5	2	234676909	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	3344980	234676909	8522464	281	95957											
MLPH	79083	broad.mit.edu	37	chr2	238443347	238443347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctccttagttaaaggaGgctgaagtgtgacatgggct	13	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238443347	T	T	238443347	1	4	96	0	1	0	0	0	0	0	0	0	9726	1015	35	2		2	MLPH	2	238443347	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3766438	238443347	4756026	282	95958											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239234561	239234561	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgtggcggggcatgagcctGaaagaacaaacgagctgctc	14	10	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239234561	A	A	239234561	3	1	96	1	0	0	0	0	1	0	0	0	16564	1291	45	4	314	4	TRAF3IP1	2	239234561	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	791214	239234561	3964812	283	95959											
AGXT	189	broad.mit.edu	37	chr2	241813512	241813512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccctcacctctgtgcaGggctgggcttgcagggagct	14	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241813512	T	T	241813512	1	4	96	0	1	0	0	0	0	0	0	0	404	1015	35	2		2	AGXT	2	241813512	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2578951	241813512	1385861	284	95960											
CNTN4	152330	broad.mit.edu	37	chr3	2787144	2787144	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatagtttttatatattttaGacaattcagaaatattgatt	4	2	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2787144	T	T	2787144	1	4	96	0	1	0	0	0	0	0	0	0	3675	957	33	3		3	CNTN4	3	2787144	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08		2787144	195235286	285	95961											
CNTN4	152330	broad.mit.edu	37	chr3	2967299	2967299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcataataattattttttGtactgtctttcagctgtagg	7	5	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2967299	T	T	2967299	1	4	96	0	1	0	0	0	0	0	0	0	3675	1392	48	3		3	CNTN4	3	2967299	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	180155	2967299	195055131	286	95962											
GRM7	2917	broad.mit.edu	37	chr3	7456889	7456889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttctcctattactctacGtggctagcactgacatgtct	6	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7456889	T	T	7456889	1	4	96	0	1	0	0	0	0	0	0	0	6868	1160	40	3		3	GRM7	3	7456889	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4489590	7456889	190565541	287	95963											
FANCD2	2177	broad.mit.edu	37	chr3	10067893	10067893	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcttcactgaaagctggctCccagccggtgatgggcgagc	13	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10067893	T	T	10067893	1	4	96	0	1	0	0	0	0	0	0	0	5722	870	30	4		4	FANCD2	3	10067893	5'Flank	SNP	C	TCGA-38-4625-01A-01D-1553-08	2611004	10067893	187954537	288	95964											
SLC6A11	6538	broad.mit.edu	37	chr3	10861574	10861574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctctgctggtcctgctGggtgacctgggattggggtt	16	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10861574	T	T	10861574	1	4	96	0	1	0	0	0	0	0	0	0	14788	1363	47	2		2	SLC6A11	3	10861574	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	793681	10861574	187160856	289	95965											
IQSEC1	9922	broad.mit.edu	37	chr3	12949849	12949849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctaggccaagctcttacCggcttccgagaggtcccgca	11	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12949849	A	A	12949849	3	1	96	1	0	0	0	0	1	0	0	0	7887	666	23	1	651	1	IQSEC1	3	12949849	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2088275	12949849	185072581	290	95966											
FBLN2	2199	broad.mit.edu	37	chr3	13679441	13679441	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccagcacgggccacctgCgggtgtggcgcagcccaggg	18	14	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13679441	A	A	13679441	1	1	96	0	1	0	0	0	0	0	0	0	5756	783	27	3		3	FBLN2	3	13679441	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	729592	13679441	184342989	291	95967											
METTL6	131965	broad.mit.edu	37	chr3	15468019	15468019	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctttgcaaagaagccatCtctgaaactgacggtaacac	7	11	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15468019	A	A	15468019	1	1	96	0	1	0	0	0	0	0	0	0	9597	928	32	3		3	METTL6	3	15468019	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	1788578	15468019	182554411	292	95968											
RFTN1	23180	broad.mit.edu	37	chr3	16475526	16475526	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaggccagcctcactgctGaggacccagggagctccgct	15	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16475526	A	A	16475526	3	1	96	1	0	0	0	0	1	0	0	0	13366	1294	45	4	1604	4	RFTN1	3	16475526	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1007507	16475526	181546904	293	95969											
ZNF385D	79750	broad.mit.edu	37	chr3	21478546	21478546	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagccgttttgccttttcttCctcggtctcagtagaaggac	9	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21478546	A	A	21478546	4	1	96	1	0	0	0	0	0	1	0	0	18004	864	30	3	614	3	ZNF385D	3	21478546	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	5003020	21478546	176543884	294	95970											
GADL1	339896	broad.mit.edu	37	chr3	30875486	30875486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattagtttctacaggcaatGgaatactatcattatcaata	5	6	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30875486	T	T	30875486	1	4	96	0	1	0	0	0	0	0	0	0	6245	1363	47	2		2	GADL1	3	30875486	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	9396940	30875486	167146944	295	95971											
DCLK3	85443	broad.mit.edu	37	chr3	36779850	36779850	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgctactgggttctggctCccatttccccctcccccact	6	19	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779850	A	A	36779850	4	1	96	1	0	0	0	0	0	1	0	0	4326	864	30	3	1661	3	DCLK3	3	36779850	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	5904364	36779850	161242580	296	95972											
LRRFIP2	9209	broad.mit.edu	37	chr3	37107382	37107382	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctccagccactggttcatGactgacatcaccattgggag	11	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37107382	A	A	37107382	3	1	96	1	0	0	0	0	1	0	0	0	9115	1290	45	4	571	4	LRRFIP2	3	37107382	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	327532	37107382	160915048	297	95973											
SCN5A	6331	broad.mit.edu	37	chr3	38591730	38591730	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagccaggaaggccccaggCtggtttgtgactgactgcat	13	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38591730	G	G	38591730	1	3	96	0	1	0	0	0	0	0	0	0	14035	812	28	4		4	SCN5A	3	38591730	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	1484348	38591730	159430700	298	95974											
SCN10A	6336	broad.mit.edu	37	chr3	38833767	38833767	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcttatgagcaagaagGgctctgggaactacaggtca	13	8	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38833767	A	A	38833767	1	1	96	0	1	0	0	0	0	0	0	0	14025	1247	43	4		4	SCN10A	3	38833767	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	242037	38833767	159188663	299	95975											
SCN10A	6336	broad.mit.edu	37	chr3	38835299	38835299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagttctgctgggagctcaCcatagaacttgggcagctgg	13	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835299	A	A	38835299	3	1	96	1	0	0	0	0	1	0	0	0	14025	507	18	3	5775	3	SCN10A	3	38835299	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1532	38835299	159187131	300	95976											
SCN11A	11280	broad.mit.edu	37	chr3	38951598	38951598	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatcttgggtcatcagccGgaacatggcaagaaaagacc	12	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38951598	T	T	38951598	2	4	96	1	0	0	0	0	0	0	0	1	14026	1115	39	1		1	SCN11A	3	38951598	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	116299	38951598	159070832	301	95977											
MYRIP	25924	broad.mit.edu	37	chr3	40192632	40192632	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggttctgaagaacctgtaCaggaagcaccggctggagag	14	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40192632	A	A	40192632	4	1	96	1	0	0	0	0	0	1	0	0	10194	489	17	3	436	3	MYRIP	3	40192632	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1241034	40192632	157829798	302	95978											
ZNF167	55888	broad.mit.edu	37	chr3	44611518	44611518	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggactctttggggtggttCctggggcagcagagactgga	19	7	1	1	rs146457545	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44611518	T	T	44611518	3	4	96	1	0	0	0	0	1	0	0	0	17867	855	30	4	934	4	ZNF167	3	44611518	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4418886	44611518	153410912	303	95979											
ZNF502	91392	broad.mit.edu	37	chr3	44762277	44762277	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcatcataggccattactGaggtctgccaaaagttaagg	9	9	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44762277	A	A	44762277	1	1	96	0	1	0	0	0	0	0	0	0	18077	1305	45	4		4	ZNF502	3	44762277	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	150759	44762277	153260153	304	95980											
LIMD1	8994	broad.mit.edu	37	chr3	45715942	45715942	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcccccaaagcccattgtaGacatccaagagaaaagcatc	7	13	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45715942	C	C	45715942	1	2	96	0	1	0	0	0	0	0	0	0	8870	957	33	4		4	LIMD1	3	45715942	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	953665	45715942	152306488	305	95981											
MYL3	4634	broad.mit.edu	37	chr3	46904801	46904801	+	Frame_Shift_Del	DEL	G	-	-													ccttagggcgctcaggctcaGggggaggtgcgggagctgga							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46904801	-	-	46904801	7	5	96	1	0	1	0	1	0	0	0	0	10142	1000	35	0	531	0	MYL3	3	46904801	Frame_Shift_Del	DEL	G	TCGA-38-4625-01A-01D-1553-08	1188859	46904801	151117629	306	95982											
NBEAL2	23218	broad.mit.edu	37	chr3	47049009	47049009	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttgctatccccctcactgGgtcaggacgcagcgactgct	10	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47049009	C	C	47049009	1	2	96	0	1	0	0	0	0	0	0	0	10283	1247	43	4		4	NBEAL2	3	47049009	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	144208	47049009	150973421	307	95983											
COL7A1	1294	broad.mit.edu	37	chr3	48630049	48630049	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccccgatgctgttggcgtaGagggcaatcacagtcacttg	12	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48630049	A	A	48630049	2	1	96	1	0	0	0	0	0	0	0	1	3736	929	33	4		4	COL7A1	3	48630049	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1581040	48630049	149392381	308	95984											
CAMKV	79012	broad.mit.edu	37	chr3	49899952	49899952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaggggcagagaccatacCaggaggggctagaggatagg	18	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49899952	A	A	49899952	1	1	96	0	1	0	0	0	0	0	0	0	2634	609	21	2		2	CAMKV	3	49899952	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1269903	49899952	148122478	309	95985											
PARP3	10039	broad.mit.edu	37	chr3	51978185	51978185	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctacatcatccagctgctCcaagacagcaaccgcttctt	5	15	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51978185	A	A	51978185	2	1	96	1	0	0	0	0	0	0	0	1	11556	842	30	3		3	PARP3	3	51978185	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	2078233	51978185	146044245	310	95986											
SEMA3G	56920	broad.mit.edu	37	chr3	52474720	52474720	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcacaggtcaccgaatcaGggacaaagacaggggcccat	12	11	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52474720	A	A	52474720	1	1	96	0	1	0	0	0	0	0	0	0	14143	1015	35	4		4	SEMA3G	3	52474720	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	496535	52474720	145547710	311	95987											
STAB1	23166	broad.mit.edu	37	chr3	52536690	52536690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaaccatgggccacgtgGggatggaagctgcctgtgct	16	10	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52536690	T	T	52536690	3	4	96	1	0	0	0	0	1	0	0	0	15355	1232	43	2	552	2	STAB1	3	52536690	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	61970	52536690	145485740	312	95988											
GLT8D1	55830	broad.mit.edu	37	chr3	52731871	52731873	+	In_Frame_Del	DEL	CTC	-	-													gcagcgatgaccacaggaatCtcctcttgtctcccatctac							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52731873	-	-	52731871	7	5	96	1	0	1	0	1	0	0	0	0	6533	912	32	0	948	0	GLT8D1	3	52731871	In_Frame_Del	DEL	CTC	TCGA-38-4625-01A-01D-1553-08	195181	52731871	145290559	313	95989											
ERC2	26059	broad.mit.edu	37	chr3	56207605	56207605	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccttccgttacaccacaAcctttacacaggtactacac	3	16	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56207605	T	T	56207605	1	4	96	0	1	0	0	0	0	0	0	0	5253	58	2	5		5	ERC2	3	56207605	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3475734	56207605	141814825	314	95990											
FLNB	2317	broad.mit.edu	37	chr3	58154384	58154384	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttcaaggccaaggtgacAggtaacgaacaaccaccttc	8	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58154384	T	T	58154384	2	4	96	1	0	0	0	0	0	0	0	1	5992	202	7	5		5	FLNB	3	58154384	Silent	SNP	A	TCGA-38-4625-01A-01D-1553-08	1946779	58154384	139868046	315	95991											
PXK	54899	broad.mit.edu	37	chr3	58368428	58368428	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattccgcaaactatactgGtaagcgaaggaatctgtgaa	9	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58368428	T	T	58368428	5	4	96	1	0	0	0	0	0	0	1	0	12957	1275	44	3	403	3	PXK	3	58368428	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	214044	58368428	139654002	316	95992											
CADPS	8618	broad.mit.edu	37	chr3	62636555	62636555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcacgacatctgacttGgagagctggttctcactctc	10	12	3	2	rs139597981		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62636555	T	T	62636555	2	4	96	1	0	0	0	0	0	0	0	1	2596	1335	47	2		2	CADPS	3	62636555	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	4268127	62636555	135385875	317	95993											
CNTN3	5067	broad.mit.edu	37	chr3	74535812	74535812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatcaaggttcccccccCttagtatttttaacttaaaa	3	10	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74535812	A	A	74535812	1	1	96	0	1	0	0	0	0	0	0	0	3674	696	24	2		2	CNTN3	3	74535812	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	11899257	74535812	123486618	318	95994											
ROBO1	6091	broad.mit.edu	37	chr3	78763638	78763638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgtcaccagctgtcaccttCctaattttcaaggtatgatc	6	11	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78763638	A	A	78763638	3	1	96	1	0	0	0	0	1	0	0	0	13624	854	30	3	4110	3	ROBO1	3	78763638	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4227826	78763638	119258792	319	95995											
CADM2	253559	broad.mit.edu	37	chr3	86028484	86028484	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcacattaactggagctcTgtagaagtttttagaaaggt	10	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86028484	A	A	86028484	1	1	96	0	1	0	0	0	0	0	0	0	2593	1595	55	5		5	CADM2	3	86028484	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	7264846	86028484	111993946	320	95996											
VGLL3	389136	broad.mit.edu	37	chr3	86996337	86996337	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatccaggcaactgtgagTtctgacctgaagacatcatg	9	9	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86996337	A	A	86996337	1	1	96	0	1	0	0	0	0	0	0	0	17287	1740	60	5		5	VGLL3	3	86996337	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	967853	86996337	111026093	321	95997											
HTR1F	3355	broad.mit.edu	37	chr3	88041057	88041057	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggggaggaataactagaTgaatgccaaataataaaaca	10	4	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88041057	A	A	88041057	1	1	96	0	1	0	0	0	0	0	0	0	7510	1479	51	5		5	HTR1F	3	88041057	3'UTR	SNP	T	TCGA-38-4625-01A-01D-1553-08	1044720	88041057	109981373	322	95998											
EPHA3	2042	broad.mit.edu	37	chr3	89457408	89457408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttatggaaaaactgagtaCattaaatttattttagaaaa	5	2	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89457408	A	A	89457408	1	1	96	0	1	0	0	0	0	0	0	0	5210	493	17	3		3	EPHA3	3	89457408	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1416351	89457408	108565022	323	95999											
EPHA6	285220	broad.mit.edu	37	chr3	97329757	97329757	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcagttctatatttaaatCatttatcataaattaatttt	1	5	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97329757	G	G	97329757	1	3	96	0	1	0	0	0	0	0	0	0	5213	841	29	4		4	EPHA6	3	97329757	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	7872349	97329757	100692673	324	96000											
OR5H15	403274	broad.mit.edu	37	chr3	97887954	97887954	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttatccagccattatgacCaatggactgtgcatccggct	8	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97887954	A	A	97887954	2	1	96	1	0	0	0	0	0	0	0	1	11255	581	21	2		2	OR5H15	3	97887954	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	558197	97887954	100134476	325	96001											
C3orf26	84319	broad.mit.edu	37	chr3	99891040	99891040	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccctggaagtcgaccctacAcaagggtagctccatttgta	10	12	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99891040	T	T	99891040	1	4	96	0	1	0	0	0	0	0	0	0	2240	174	6	5		5	C3orf26	3	99891040	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2003086	99891040	98131390	326	96002											
FAM55C	91775	broad.mit.edu	37	chr3	101520220	101520220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccaggagcgcatggaggagGactccttgctggctgccttg	16	11	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101520220	T	T	101520220	3	4	96	1	0	0	0	0	1	0	0	0	5637	1174	41	3	241	3	FAM55C	3	101520220	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1629180	101520220	96502210	327	96003											
NFKBIZ	64332	broad.mit.edu	37	chr3	101571489	101571489	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatcagagatttatggtaagCtataaagggtggtagagata	12	2	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101571489	G	G	101571489	1	3	96	0	1	0	0	0	0	0	0	0	10478	812	28	4		4	NFKBIZ	3	101571489	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	51269	101571489	96450941	328	96004											
DZIP3	9666	broad.mit.edu	37	chr3	108407548	108407548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaggccactcacttcaCagggtcctgccacatgggaa	11	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108407548	A	A	108407548	3	1	96	1	0	0	0	0	1	0	0	0	4905	479	17	3	3493	3	DZIP3	3	108407548	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	6836059	108407548	89614882	329	96005											
MORC1	27136	broad.mit.edu	37	chr3	108780803	108780804	+	Intron	INS	-	A	A													caaatgacacaatttgccatINSttaataagactactctcttt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108780804	A	A	108780803	6	5	96	0	1	1	1	0	0	0	0	0	9795	1508	52	0		0	MORC1	3	108780803	Intron	INS	-	TCGA-38-4625-01A-01D-1553-08	373255	108780803	89241627	330	96006											
DPPA2	151871	broad.mit.edu	37	chr3	109023311	109023311	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccatgcttaacaagatacAtaagggttacctcttagcac	7	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109023311	T	T	109023311	1	4	96	0	1	0	0	0	0	0	0	0	4774	232	8	5		5	DPPA2	3	109023311	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	242508	109023311	88999119	331	96007											
C3orf52	79669	broad.mit.edu	37	chr3	111849175	111849175	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcacatttgttactattGcaactgctactggtctaaac	5	10	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111849175	T	T	111849175	1	4	96	0	1	0	0	0	0	0	0	0	2254	1334	46	3		3	C3orf52	3	111849175	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2825864	111849175	86173255	332	96008											
SLC9A10	285335	broad.mit.edu	37	chr3	111950283	111950283	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcatctatttccttgttAcagtgtggacatttcacctt	5	10	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111950283	G	G	111950283	2	3	96	1	0	0	0	0	0	0	0	1	14824	389	14	5		5	SLC9A10	3	111950283	Silent	SNP	A	TCGA-38-4625-01A-01D-1553-08	101108	111950283	86072147	333	96009											
CCDC80	151887	broad.mit.edu	37	chr3	112326064	112326064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acactcccccaacttcctctCcaacgcctaaaagcttcaga	3	18	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112326064	A	A	112326064	3	1	96	1	0	0	0	0	1	0	0	0	2882	855	30	3	395	3	CCDC80	3	112326064	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	375781	112326064	85696366	334	96010											
RABL3	285282	broad.mit.edu	37	chr3	120449566	120449566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatccactgagcagcccaCagtccatgatggatttccca	8	14	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120449566	A	A	120449566	3	1	96	1	0	0	0	0	1	0	0	0	13080	478	17	3	623	3	RABL3	3	120449566	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	8123502	120449566	77572864	335	96011											
STXBP5L	9515	broad.mit.edu	37	chr3	121100283	121100283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctctccttgtctgttcGttggaaccagtctgggaatg	10	11	3	0	rs17740066	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121100283	T	T	121100283	3	4	96	1	0	0	0	0	1	0	0	0	15475	1145	40	3	2649	3	STXBP5L	3	121100283	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	650717	121100283	76922147	336	96012											
MYLK	4638	broad.mit.edu	37	chr3	123444857	123444857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgcagcacaaaatcctGgccctcaataacagcgcagt	8	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123444857	T	T	123444857	3	4	96	1	0	0	0	0	1	0	0	0	10150	1357	47	2	4251	2	MYLK	3	123444857	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2344574	123444857	74577573	337	96013											
ROPN1	54763	broad.mit.edu	37	chr3	123699363	123699363	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctcaggagaaaaaaataCgttaagatgaaaacttcgat	7	5	1	3	rs140275553	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123699363	A	A	123699363	1	1	96	0	1	0	0	0	0	0	0	0	13634	551	19	3		3	ROPN1	3	123699363	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	254506	123699363	74323067	338	96014											
KALRN	8997	broad.mit.edu	37	chr3	123813744	123813744	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccgcttgctccggctgctGgatcgaggtatcctgagtgt	13	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123813744	A	A	123813744	2	1	96	1	0	0	0	0	0	0	0	1	8045	1335	47	4		4	KALRN	3	123813744	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	114381	123813744	74208686	339	96015											
KALRN	8997	broad.mit.edu	37	chr3	123987731	123987731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagttcttcaacagcgccGtgcacctgctctcgcgcctc	10	16	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123987731	T	T	123987731	3	4	96	1	0	0	0	0	1	0	0	0	8045	1145	40	3	610	3	KALRN	3	123987731	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	173987	123987731	74034699	340	96016											
KALRN	8997	broad.mit.edu	37	chr3	124048912	124048912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatgagggcactggcctGtgccctgtgaaatagcctgg	16	9	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124048912	T	T	124048912	1	4	96	0	1	0	0	0	0	0	0	0	8045	1392	48	3		3	KALRN	3	124048912	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	61181	124048912	73973518	341	96017											
SLC41A3	54946	broad.mit.edu	37	chr3	125727506	125727506	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctccctcagcctctcactCagacaagagatcaagcctgc	7	17	4	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125727506	G	G	125727506	1	3	96	0	1	0	0	0	0	0	0	0	14745	841	29	4		4	SLC41A3	3	125727506	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1678594	125727506	72294924	342	96018											
COPG	22820	broad.mit.edu	37	chr3	128984617	128984617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaccgagtggtcttggagCatgaggaggtccgggcaggt	17	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128984617	A	A	128984617	3	1	96	1	0	0	0	0	1	0	0	0	3763	710	25	3	1504	3	COPG	3	128984617	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3257111	128984617	69037813	343	96019											
EPHB1	2047	broad.mit.edu	37	chr3	134920428	134920428	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcgggacctggctgctaGgaacattctggtcaacagta	12	10	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134920428	A	A	134920428	3	1	96	1	0	0	0	0	1	0	0	0	5216	1000	35	4	2289	4	EPHB1	3	134920428	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5935811	134920428	63102002	344	96020											
PPP2R3A	5523	broad.mit.edu	37	chr3	135720271	135720271	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatattttcagctaactgtCatttaggagaattttcatga	6	5	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135720271	T	T	135720271	1	4	96	0	1	0	0	0	0	0	0	0	12489	841	29	4		4	PPP2R3A	3	135720271	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	799843	135720271	62302159	345	96021											
CLSTN2	64084	broad.mit.edu	37	chr3	140282979	140282979	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgactatcacagtcaacCccatggaggtgatcctcatg	9	13	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140282979	T	T	140282979	3	4	96	1	0	0	0	0	1	0	0	0	3594	623	22	4	2721	4	CLSTN2	3	140282979	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4562708	140282979	57739451	346	96022											
CLSTN2	64084	broad.mit.edu	37	chr3	140285095	140285095	+	Nonstop_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactccaccctcccctactaGtgcccaggggtctgctgcct	9	18	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140285095	T	T	140285095	4	4	96	1	0	0	0	0	0	0	0	0	3594	1024	36	3	2934	3	CLSTN2	3	140285095	Nonstop_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2116	140285095	57737335	347	96023											
GRK7	131890	broad.mit.edu	37	chr3	141497180	141497180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaacaccgcctacctgcaGgcccggaagccctcggactg	11	18	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141497180	T	T	141497180	3	4	96	1	0	0	0	0	1	0	0	0	6860	991	35	2	56	2	GRK7	3	141497180	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1212085	141497180	56525250	348	96024											
GRK7	131890	broad.mit.edu	37	chr3	141535483	141535483	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaagaatgctacacacTttgtattgttagaacatgtc	7	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141535483	A	A	141535483	1	1	96	0	1	0	0	0	0	0	0	0	6860	1624	56	5		5	GRK7	3	141535483	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	38303	141535483	56486947	349	96025											
CP	1356	broad.mit.edu	37	chr3	148905796	148905796	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaagcattacatatgcagTactaaaataacttggtagat	6	5	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148905796	C	C	148905796	1	2	96	0	1	0	0	0	0	0	0	0	3819	1653	57	5		5	CP	3	148905796	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	7370313	148905796	49116634	350	96026											
MED12L	116931	broad.mit.edu	37	chr3	150840700	150840700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgctcgatcccagagtgCaattcatagttggttttctg	9	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150840700	A	A	150840700	3	1	96	1	0	0	0	0	1	0	0	0	9522	710	25	3	345	3	MED12L	3	150840700	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1934904	150840700	47181730	351	96027											
GPR149	344758	broad.mit.edu	37	chr3	154146868	154146868	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtccaccaggcagccccaGggcgtgcgcacgaaggcgcc	14	17	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154146868	A	A	154146868	2	1	96	1	0	0	0	0	0	0	0	1	6719	987	35	4		4	GPR149	3	154146868	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	3306168	154146868	43875562	352	96028											
MME	4311	broad.mit.edu	37	chr3	154859665	154859665	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaactgattgaaacaattGaggaagaatcccaagtgaat	8	5	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154859665	C	C	154859665	1	2	96	0	1	0	0	0	0	0	0	0	9738	1305	45	4		4	MME	3	154859665	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	712797	154859665	43162765	353	96029											
GMPS	8833	broad.mit.edu	37	chr3	155655474	155655474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccaggaactactgagtGggagtaataaacttcttgtt	10	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155655474	T	T	155655474	3	4	96	1	0	0	0	0	1	0	0	0	6562	1357	47	2	2137	2	GMPS	3	155655474	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	795809	155655474	42366956	354	96030											
GFM1	85476	broad.mit.edu	37	chr3	158372287	158372287	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaataaattgatataaaaGaaatatcatatattacatct	3	3	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158372287	C	C	158372287	1	2	96	0	1	0	0	0	0	0	0	0	6405	957	33	4		4	GFM1	3	158372287	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2716813	158372287	39650143	355	96031											
ARL14	80117	broad.mit.edu	37	chr3	160395109	160395109	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaaaaaaaggtatttAgagacagagagagaaaaagg	11	1	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160395109	T	T	160395109	1	4	96	0	1	0	0	0	0	0	0	0	932	435	15	5		5	ARL14	3	160395109	5'UTR	SNP	A	TCGA-38-4625-01A-01D-1553-08	2022822	160395109	37627321	356	96032											
SI	6476	broad.mit.edu	37	chr3	164748524	164748524	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccatacacagccacgttgTgtgcacttttgttcagttgc	8	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164748524	A	A	164748524	2	1	96	1	0	0	0	0	0	0	0	1	14410	1683	59	5		5	SI	3	164748524	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	4353415	164748524	33273906	357	96033											
GOLIM4	27333	broad.mit.edu	37	chr3	167745577	167745577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgaggctcatgtctattaCctggatctccttctgcttca	7	13	5	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167745577	A	A	167745577	3	1	96	1	0	0	0	0	1	0	0	0	6630	507	18	3	548	3	GOLIM4	3	167745577	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2997053	167745577	30276853	358	96034											
GOLIM4	27333	broad.mit.edu	37	chr3	167745622	167745622	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctggttgtctctttcaTaggctagcaaatcaaaggaa	11	7	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167745622	C	C	167745622	3	2	96	1	0	0	0	0	1	0	0	0	6630	1406	49	5	593	5	GOLIM4	3	167745622	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	45	167745622	30276808	359	96035											
PLD1	5337	broad.mit.edu	37	chr3	171426594	171426594	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcttccattgcatttgCcacatcttcaaaatatcctt	3	13	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171426594	G	G	171426594	3	3	96	1	0	0	0	0	1	0	0	0	12140	739	26	4	2196	4	PLD1	3	171426594	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3680972	171426594	26595836	360	96036											
TTC14	151613	broad.mit.edu	37	chr3	180322691	180322691	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtcctatgaaaatgtcatGcagagttccttgggatttgt	11	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180322691	C	C	180322691	3	2	96	1	0	0	0	0	1	0	0	0	16807	1319	46	4	775	4	TTC14	3	180322691	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	8896097	180322691	17699739	361	96037											
CCDC39	339829	broad.mit.edu	37	chr3	180377196	180377196	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgagttaaatacaaaagaGacaaatgcagctgaacatta	7	5	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180377196	T	T	180377196	1	4	96	0	1	0	0	0	0	0	0	0	2838	957	33	3		3	CCDC39	3	180377196	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	54505	180377196	17645234	362	96038											
EPHB3	2049	broad.mit.edu	37	chr3	184298540	184298540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaagatccccatccgctgGactgccccagaggccatagc	12	15	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184298540	T	T	184298540	3	4	96	1	0	0	0	0	1	0	0	0	5218	1183	41	3	2462	3	EPHB3	3	184298540	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3921344	184298540	13723890	363	96039											
SENP2	59343	broad.mit.edu	37	chr3	185330390	185330391	+	Intron	DEL	CA	-	-													aatcttttctttaccatcctCacagatagacttgttgaaac							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	185330391	-	-	185330390	6	5	96	0	1	1	0	1	0	0	0	0	14160	841	29	0		0	SENP2	3	185330390	Intron	DEL	CA	TCGA-38-4625-01A-01D-1553-08	1031850	185330390	12692040	364	96040											
DGKG	1608	broad.mit.edu	37	chr3	185882895	185882895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtctggtccccagatggcCaatgtctgtatcccttcatc	8	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185882895	A	A	185882895	1	1	96	0	1	0	0	0	0	0	0	0	4509	609	21	2		2	DGKG	3	185882895	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	552505	185882895	12139535	365	96041											
MASP1	5648	broad.mit.edu	37	chr3	186980259	186980259	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagatttccatcgtaaaggaGaggtcacaaggcagttttca	10	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186980259	C	C	186980259	1	2	96	0	1	0	0	0	0	0	0	0	9414	957	33	4		4	MASP1	3	186980259	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1097364	186980259	11042171	366	96042											
LEPREL1	55214	broad.mit.edu	37	chr3	189688705	189688705	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgaagagaaaactatTtgtattattatatgcttatg	7	2	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189688705	C	C	189688705	1	2	96	0	1	0	0	0	0	0	0	0	8802	1856	64	5		5	LEPREL1	3	189688705	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	2708446	189688705	8333725	367	96043											
IL1RAP	3556	broad.mit.edu	37	chr3	190363739	190363739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatctttggatatttaatGtccgatgctctttgatgtaa	8	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190363739	T	T	190363739	1	4	96	0	1	0	0	0	0	0	0	0	7730	1392	48	3		3	IL1RAP	3	190363739	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	675034	190363739	7658691	368	96044											
CCDC50	152137	broad.mit.edu	37	chr3	191078966	191078966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtataacttagttactgCccctctccctcatggagaaa	8	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191078966	A	A	191078966	1	1	96	0	1	0	0	0	0	0	0	0	2848	754	26	3		3	CCDC50	3	191078966	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	715227	191078966	6943464	369	96045											
MAEA	10296	broad.mit.edu	37	chr4	1305878	1305879	+	Frame_Shift_Ins	INS	-	G	G													ggagaagacgttgagcggctINSgccccgccgtggactccgtg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1305879	G	G	1305878	7	5	96	1	0	1	1	0	0	0	0	0	9241	1580	55	0	187	0	MAEA	4	1305878	Frame_Shift_Ins	INS	-	TCGA-38-4625-01A-01D-1553-08		1305878	189848398	370	96046											
SLC2A9	56606	broad.mit.edu	37	chr4	9982270	9982270	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagtgaacacgccaatgcaGataaagatggcagtcacctg	10	11	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9982270	C	C	9982270	3	2	96	1	0	0	0	0	1	0	0	0	14666	932	33	4	1027	4	SLC2A9	4	9982270	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	8676392	9982270	181172006	371	96047											
WDR1	9948	broad.mit.edu	37	chr4	10076965	10076965	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagttaaactctagtcCctgattcggtccatccagag	9	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10076965	A	A	10076965	1	1	96	0	1	0	0	0	0	0	0	0	17399	638	22	2		2	WDR1	4	10076965	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	94695	10076965	181077311	372	96048											
HS3ST1	9957	broad.mit.edu	37	chr4	11400898	11400898	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttttgttaaagtagaagttCgaagcattgatctgcggcga	12	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11400898	T	T	11400898	2	4	96	1	0	0	0	0	0	0	0	1	7430	871	31	4		4	HS3ST1	4	11400898	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1323933	11400898	179753378	373	96049											
SLIT2	9353	broad.mit.edu	37	chr4	20542995	20542995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccagcggaaatagcgtGgagaagggtagctggggttt	16	6	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20542995	T	T	20542995	1	4	96	0	1	0	0	0	0	0	0	0	14854	1363	47	2		2	SLIT2	4	20542995	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	9142097	20542995	170611281	374	96050											
TBC1D1	23216	broad.mit.edu	37	chr4	38117271	38117271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcacattggatttctgGttcaataggctttctttttt	8	6	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38117271	T	T	38117271	1	4	96	0	1	0	0	0	0	0	0	0	15716	1276	44	3		3	TBC1D1	4	38117271	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	17574276	38117271	153037005	375	96051											
FAM114A1	92689	broad.mit.edu	37	chr4	38893431	38893431	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggggcaaatctctgctgtCgtcagcatctgccacagtag	11	12	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38893431	A	A	38893431	4	1	96	1	0	0	0	0	0	1	0	0	5449	893	31	3	422	3	FAM114A1	4	38893431	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	776160	38893431	152260845	376	96052											
UBE2K	3093	broad.mit.edu	37	chr4	39771668	39771668	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttccccacctagcccaggGaccccagcctccgggcctcc	8	22	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39771668	T	T	39771668	1	4	96	0	1	0	0	0	0	0	0	0	16988	1189	41	3		3	UBE2K	4	39771668	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	878237	39771668	151382608	377	96053											
COMMD8	54951	broad.mit.edu	37	chr4	47462120	47462120	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactcagagagaaacctgagCattatttattgtaagttata	7	5	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47462120	G	G	47462120	1	3	96	0	1	0	0	0	0	0	0	0	3754	725	25	4		4	COMMD8	4	47462120	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	7690452	47462120	143692156	378	96054											
FRYL	285527	broad.mit.edu	37	chr4	48603934	48603934	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagtgttgctattcaagtAtaccaatagtaacaaaagtt	6	6	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48603934	G	G	48603934	1	3	96	0	1	0	0	0	0	0	0	0	6124	464	16	5		5	FRYL	4	48603934	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1141814	48603934	142550342	379	96055											
LPHN3	23284	broad.mit.edu	37	chr4	62679441	62679441	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctattaattcagtttggagtGaaatagtgttatatcataaa	7	3	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62679441	T	T	62679441	1	4	96	0	1	0	0	0	0	0	0	0	9004	1305	45	3		3	LPHN3	4	62679441	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	14075507	62679441	128474835	380	96056											
EPHA5	2044	broad.mit.edu	37	chr4	66230705	66230705	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagatattgaggatatgcaCacacatgtataatttgccat	7	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66230705	T	T	66230705	1	4	96	0	1	0	0	0	0	0	0	0	5212	493	17	4		4	EPHA5	4	66230705	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3551264	66230705	124923571	381	96057											
UGT2B15	7366	broad.mit.edu	37	chr4	69513259	69513259	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttaattcatgtcattacaGaaagtttggtttttaaattg	6	3	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69513259	C	C	69513259	1	2	96	0	1	0	0	0	0	0	0	0	17084	957	33	4		4	UGT2B15	4	69513259	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3282554	69513259	121641017	382	96058											
UGT2B10	7365	broad.mit.edu	37	chr4	69870882	69870882	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaataaagataccaacaCtgaaagtaagttaatttgcc	5	6	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69870882	T	T	69870882	1	4	96	0	1	0	0	0	0	0	0	0	17082	580	20	4		4	UGT2B10	4	69870882	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	357623	69870882	121283394	383	96059											
SULT1B1	27284	broad.mit.edu	37	chr4	70599131	70599131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatatctaccattttacCtctttcatatcttcatagta	1	11	5	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70599131	A	A	70599131	3	1	96	1	0	0	0	0	1	0	0	0	15494	695	24	2	305	2	SULT1B1	4	70599131	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	728249	70599131	120555145	384	96060											
CSN3	1448	broad.mit.edu	37	chr4	71110523	71110523	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatttttttttaaatttatCtttaggtgcaataatgaaga	5	2	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71110523	A	A	71110523	1	1	96	0	1	0	0	0	0	0	0	0	3983	928	32	3		3	CSN3	4	71110523	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	511392	71110523	120043753	385	96061											
PPEF2	5470	broad.mit.edu	37	chr4	76805631	76805631	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgtgtattctgctttttAaaaaaattggaaaactagtt	6	4	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76805631	T	T	76805631	1	4	96	0	1	0	0	0	0	0	0	0	12404	377	13	5		5	PPEF2	4	76805631	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	5695108	76805631	114348645	386	96062											
CCDC158	339965	broad.mit.edu	37	chr4	77265625	77265625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgagtttatgaagactgGtgggcaggagctcaagagct	14	5	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77265625	T	T	77265625	1	4	96	0	1	0	0	0	0	0	0	0	2817	1276	44	3		3	CCDC158	4	77265625	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	459994	77265625	113888651	387	96063											
WDFY3	23001	broad.mit.edu	37	chr4	85701425	85701425	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtactgcaaagtagtggcaaCaggcttagggacaaatgttc	12	7	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85701425	G	G	85701425	3	3	96	1	0	0	0	0	1	0	0	0	17397	478	17	4	6551	4	WDFY3	4	85701425	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	8435800	85701425	105452851	388	96064											
MEPE	56955	broad.mit.edu	37	chr4	88767740	88767740	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaatcctggtctccttGggggaatttttgctatctta	9	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88767740	T	T	88767740	1	4	96	0	1	0	0	0	0	0	0	0	9571	1363	47	2		2	MEPE	4	88767740	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	3066315	88767740	102386536	389	96065											
ENPEP	2028	broad.mit.edu	37	chr4	111441533	111441533	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatcttgggtaaggctctAtaatgcattgaaaaaaacac	8	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111441533	G	G	111441533	1	3	96	0	1	0	0	0	0	0	0	0	5170	464	16	5		5	ENPEP	4	111441533	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	22673793	111441533	79712743	390	96066											
NDST4	64579	broad.mit.edu	37	chr4	115997446	115997446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgttgcaaagagtgttttGctagacaaggatgacaggga	13	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115997446	T	T	115997446	3	4	96	1	0	0	0	0	1	0	0	0	10353	1310	46	3	1923	3	NDST4	4	115997446	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4555913	115997446	75156830	391	96067											
NDST3	9348	broad.mit.edu	37	chr4	118976096	118976096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagttcatcttccagcagGgatacaactatcccagtttg	7	11	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118976096	T	T	118976096	1	4	96	0	1	0	0	0	0	0	0	0	10352	1247	43	2		2	NDST3	4	118976096	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2978650	118976096	72178180	392	96068											
KIAA1109	84162	broad.mit.edu	37	chr4	123167293	123167309	+	Splice_Site	DEL	TACGATCTTTTTAGTTA	-	-													gcttgtgaaataatttcactTacgatctttttagttatctt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123167309	-	-	123167293	8	5	96	1	0	1	0	1	0	0	1	0	8278	1769	61	0		0	KIAA1109	4	123167293	Splice_Site	DEL	TACGATCTTTTTAGTTA	TCGA-38-4625-01A-01D-1553-08	4191197	123167293	67986983	393	96069											
FAT4	79633	broad.mit.edu	37	chr4	126401102	126401102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacccaagtatgtaatcaaaTtaaaaattatgctttcattc	3	8	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126401102	A	A	126401102	1	1	96	0	1	0	0	0	0	0	0	0	5749	1508	52	5		5	FAT4	4	126401102	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	3233809	126401102	64753174	394	96070											
PHF17	79960	broad.mit.edu	37	chr4	129782741	129782741	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caactttcctgtcatggcacAtgcttgaagcatggctcttc	8	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129782741	T	T	129782741	1	4	96	0	1	0	0	0	0	0	0	0	11923	232	8	5		5	PHF17	4	129782741	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3381639	129782741	61371535	395	96071											
NAA15	80155	broad.mit.edu	37	chr4	140264216	140264216	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaaatagtttcaaactTatagaaaagttgcaggaata	7	3	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140264216	C	C	140264216	1	2	96	0	1	0	0	0	0	0	0	0	10212	1769	61	5		5	NAA15	4	140264216	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	10481475	140264216	50890060	396	96072											
ZNF827	152485	broad.mit.edu	37	chr4	146806894	146806894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggctgaacaatgctgaCgcactgttggccacatactc	9	13	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146806894	A	A	146806894	2	1	96	1	0	0	0	0	0	0	0	1	18309	523	19	3		3	ZNF827	4	146806894	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	6542678	146806894	44347382	397	96073											
SLC10A7	84068	broad.mit.edu	37	chr4	147438205	147438205	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtacctctgttttcaatgaTagtccactgttaaagaatat	6	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147438205	A	A	147438205	2	1	96	1	0	0	0	0	0	0	0	1	14492	1393	49	5		5	SLC10A7	4	147438205	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	631311	147438205	43716071	398	96074											
ARFIP1	27236	broad.mit.edu	37	chr4	153803943	153803943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagactcttcttggggcCattaattttttcattgctag	10	7	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153803943	A	A	153803943	2	1	96	1	0	0	0	0	0	0	0	1	856	581	21	2		2	ARFIP1	4	153803943	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	6365738	153803943	37350333	399	96075											
ARFIP1	27236	broad.mit.edu	37	chr4	153804121	153804121	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaaacaacagaaaccaactCtggccaatatgggcaggaaa	8	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153804121	T	T	153804121	1	4	96	0	1	0	0	0	0	0	0	0	856	928	32	4		4	ARFIP1	4	153804121	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	178	153804121	37350155	400	96076											
LRAT	9227	broad.mit.edu	37	chr4	155665772	155665772	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctccaacaagcgtctcatCctgggcgttattgtcaaagt	9	11	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155665772	A	A	155665772	2	1	96	1	0	0	0	0	0	0	0	1	9017	845	30	3		3	LRAT	4	155665772	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1861651	155665772	35488504	401	96077											
TDO2	6999	broad.mit.edu	37	chr4	156841131	156841131	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcctacttcagcagtgatGaatcagattaaaatcgtctg	8	9	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156841131	T	T	156841131	4	4	96	1	0	0	0	0	0	1	0	0	15849	1291	45	3	1256	3	TDO2	4	156841131	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1175359	156841131	34313145	402	96078											
PPID	5481	broad.mit.edu	37	chr4	159638396	159638396	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaccaaggttagatgtgttCttttctgaattgtgtgttag	10	4	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159638396	G	G	159638396	1	3	96	0	1	0	0	0	0	0	0	0	12422	928	32	4		4	PPID	4	159638396	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2797265	159638396	31515880	403	96079											
TKTL2	84076	broad.mit.edu	37	chr4	164394038	164394038	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtatgagattctcattggtCtgtatctgactctcaattaa	8	7	4	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164394038	A	A	164394038	3	1	96	1	0	0	0	0	1	0	0	0	16059	912	32	3	1035	3	TKTL2	4	164394038	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4755642	164394038	26760238	404	96080											
MARCH1	55016	broad.mit.edu	37	chr4	164534479	164534479	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacttacctgcagatgtcctGagtggatggacagacagaca	11	10	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164534479	T	T	164534479	3	4	96	1	0	0	0	0	1	0	0	0	9390	1299	45	3	656	3	MARCH1	4	164534479	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	140441	164534479	26619797	405	96081											
MARCH1	55016	broad.mit.edu	37	chr4	165110855	165110855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaggaacacagtggtaCctaccaagaagtccatatct	7	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165110855	A	A	165110855	1	1	96	0	1	0	0	0	0	0	0	0	9390	522	18	3		3	MARCH1	4	165110855	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	576376	165110855	26043421	406	96082											
SPOCK3	50859	broad.mit.edu	37	chr4	167658831	167658831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcctttctgagaagcaCccattatgcattaatgcatt	7	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167658831	A	A	167658831	1	1	96	0	1	0	0	0	0	0	0	0	15199	522	18	3		3	SPOCK3	4	167658831	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2547976	167658831	23495445	407	96083											
CLCN3	1182	broad.mit.edu	37	chr4	170634343	170634343	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgaagcttcgaagcattCttgacatgagcccttttaca	7	10	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170634343	G	G	170634343	3	3	96	1	0	0	0	0	1	0	0	0	3495	913	32	4	2305	4	CLCN3	4	170634343	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2975512	170634343	20519933	408	96084											
GLRA3	8001	broad.mit.edu	37	chr4	175564774	175564774	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attaaaagaatctcatctttCtcatgactttgcatagctaa	4	8	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175564774	G	G	175564774	1	3	96	0	1	0	0	0	0	0	0	0	6520	928	32	4		4	GLRA3	4	175564774	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	4930431	175564774	15589502	409	96085											
WDR17	116966	broad.mit.edu	37	chr4	177046589	177046589	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaattgtcctttataggttGattttgtgtaaaatgtatta	8	2	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177046589	A	A	177046589	1	1	96	0	1	0	0	0	0	0	0	0	17404	1305	45	4		4	WDR17	4	177046589	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1481815	177046589	14107687	410	96086											
TRIML1	339976	broad.mit.edu	37	chr4	189061773	189061773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagagagtgaaactgtGccaggtcggtgtctgtctga	16	6	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189061773	T	T	189061773	3	4	96	1	0	0	0	0	1	0	0	0	16675	1319	46	3	506	3	TRIML1	4	189061773	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	12015184	189061773	2092503	411	96087											
TRIML1	339976	broad.mit.edu	37	chr4	189064958	189064958	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtgttatgatcaaagcGcaccatgctaacttctttct	7	10	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189064958	C	C	189064958	1	2	96	0	1	0	0	0	0	0	0	0	16675	1102	38	4		4	TRIML1	4	189064958	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3185	189064958	2089318	412	96088											
SLC6A19	340024	broad.mit.edu	37	chr5	1221988	1221988	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggtgagcacactgtccaCagcctccatgaacggggacc	12	14	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1221988	T	T	1221988	3	4	96	1	0	0	0	0	1	0	0	0	14796	478	17	4	1920	4	SLC6A19	5	1221988	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08		1221988	179693272	413	96089											
SRD5A1	6715	broad.mit.edu	37	chr5	6668412	6668412	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgaaattatcttcaacttGaagctttccaatggcgcttc	6	10	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6668412	C	C	6668412	1	2	96	0	1	0	0	0	0	0	0	0	15256	1305	45	4		4	SRD5A1	5	6668412	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	5446424	6668412	174246848	414	96090											
SEMA5A	9037	broad.mit.edu	37	chr5	9066560	9066560	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagcagccactggtgccgtCgctagaacagtaccgcattt	12	12	0	1	rs139823470	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9066560	G	G	9066560	3	3	96	1	0	0	0	0	1	0	0	0	14150	884	31	4	980	4	SEMA5A	5	9066560	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2398148	9066560	171848700	415	96091											
TRIO	7204	broad.mit.edu	37	chr5	14369489	14369489	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgctcacaggtctgcAgcgtcctcgagagcctggaa	11	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14369489	T	T	14369489	3	4	96	1	0	0	0	0	1	0	0	0	16677	188	7	5	3143	5	TRIO	5	14369489	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	5302929	14369489	166545771	416	96092											
ANKH	56172	broad.mit.edu	37	chr5	14797484	14797484	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacttaaatcctagacattCggtctgtgatcagtaccact	6	10	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14797484	T	T	14797484	1	4	96	0	1	0	0	0	0	0	0	0	627	899	31	4		4	ANKH	5	14797484	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	427995	14797484	166117776	417	96093											
CDH18	1016	broad.mit.edu	37	chr5	19473730	19473730	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctctccgcctccttcatCatcataggtgaccacgttct	5	16	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19473730	A	A	19473730	3	1	96	1	0	0	0	0	1	0	0	0	3133	826	29	3	398	3	CDH18	5	19473730	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4676246	19473730	161441530	418	96094											
CDH12	1010	broad.mit.edu	37	chr5	21842476	21842476	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgtaaaataaatatcacAaatgctctgttttctgaaat	4	5	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21842476	G	G	21842476	1	3	96	0	1	0	0	0	0	0	0	0	3128	145	5	5		5	CDH12	5	21842476	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2368746	21842476	159072784	419	96095											
CDH9	1007	broad.mit.edu	37	chr5	26902527	26902527	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accattttttcacacagtttGtaaatagtgagattattata	5	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26902527	A	A	26902527	1	1	96	0	1	0	0	0	0	0	0	0	3147	1392	48	4		4	CDH9	5	26902527	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	5060051	26902527	154012733	420	96096											
RNASEN	29102	broad.mit.edu	37	chr5	31406916	31406916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctagggaattagacacaCaggatgttcattcaaagcaa	9	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31406916	A	A	31406916	1	1	96	0	1	0	0	0	0	0	0	0	13528	493	17	3		3	RNASEN	5	31406916	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4504389	31406916	149508344	421	96097											
ADAMTS12	81792	broad.mit.edu	37	chr5	33661864	33661864	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttaaactgtttcctctactGatagggaagtcaggagttga	11	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33661864	C	C	33661864	1	2	96	0	1	0	0	0	0	0	0	0	257	1305	45	4		4	ADAMTS12	5	33661864	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2254948	33661864	147253396	422	96098											
SPEF2	79925	broad.mit.edu	37	chr5	35712824	35712824	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaatgtaactgtttacctAtgggaaatagcattagcttg	8	6	0	0	rs111691682		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35712824	T	T	35712824	1	4	96	0	1	0	0	0	0	0	0	0	15153	464	16	5		5	SPEF2	5	35712824	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2050960	35712824	145202436	423	96099											
NIPBL	25836	broad.mit.edu	37	chr5	36986345	36986345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacttattaaagatagagaGgacaaatcaagaagttccct	7	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36986345	T	T	36986345	3	4	96	1	0	0	0	0	1	0	0	0	10523	991	35	2	3097	2	NIPBL	5	36986345	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1273521	36986345	143928915	424	96100											
NUP155	9631	broad.mit.edu	37	chr5	37331778	37331778	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacattttttaaaagtataTataattacctgatgtaattt	3	4	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37331778	C	C	37331778	1	2	96	0	1	0	0	0	0	0	0	0	10851	1421	49	5		5	NUP155	5	37331778	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	345433	37331778	143583482	425	96101											
NUP155	9631	broad.mit.edu	37	chr5	37358354	37358354	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actttgggagtctgaggcagGaggactgcctgagcccagaa	15	9	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37358354	A	A	37358354	1	1	96	0	1	0	0	0	0	0	0	0	10851	1189	41	4		4	NUP155	5	37358354	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	26576	37358354	143556906	426	96102											
WDR70	55100	broad.mit.edu	37	chr5	37438088	37438088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggcactaaaacagtaaGtttaaaaatctagttttttc	6	6	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37438088	T	T	37438088	1	4	96	0	1	0	0	0	0	0	0	0	17448	1044	36	3		3	WDR70	5	37438088	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	79734	37438088	143477172	427	96103											
EGFLAM	133584	broad.mit.edu	37	chr5	38463130	38463130	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgggtaagtgaccgaccctCgaccaaagcaaaattaggcc	11	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38463130	T	T	38463130	1	4	96	0	1	0	0	0	0	0	0	0	5006	899	31	4		4	EGFLAM	5	38463130	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1025042	38463130	142452130	428	96104											
OSMR	9180	broad.mit.edu	37	chr5	38883862	38883862	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatctgctgaaggcaaatgGataacttgttttaagaggct	10	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38883862	T	T	38883862	1	4	96	0	1	0	0	0	0	0	0	0	11386	1189	41	3		3	OSMR	5	38883862	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	420732	38883862	142031398	429	96105											
C6	729	broad.mit.edu	37	chr5	41160554	41160554	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagttctctgaaatgagaGggaaagcctgaaaattttac	9	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41160554	C	C	41160554	1	2	96	0	1	0	0	0	0	0	0	0	2338	1015	35	4		4	C6	5	41160554	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2276692	41160554	139754706	430	96106											
C5orf28	64417	broad.mit.edu	37	chr5	43446488	43446488	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatatccacaaaccatgacGaatcccatctcggatatgat	6	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43446488	A	A	43446488	3	1	96	1	0	0	0	0	1	0	0	0	2312	1058	37	4	167	4	C5orf28	5	43446488	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2285934	43446488	137468772	431	96107											
C5orf34	375444	broad.mit.edu	37	chr5	43490699	43490699	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttttaaagtattagctCttctaaacagatttaagttt	4	4	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43490699	G	G	43490699	1	3	96	0	1	0	0	0	0	0	0	0	2316	928	32	4		4	C5orf34	5	43490699	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	44211	43490699	137424561	432	96108											
ESM1	11082	broad.mit.edu	37	chr5	54277784	54277784	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagttattcacactgaaatGagactattcttccaatgctt	5	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54277784	T	T	54277784	1	4	96	0	1	0	0	0	0	0	0	0	5294	1305	45	3		3	ESM1	5	54277784	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	10787085	54277784	126637476	433	96109											
RAB3C	115827	broad.mit.edu	37	chr5	57913383	57913383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctgtttctggcaaggcCaataatgagtatgctgctag	10	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57913383	A	A	57913383	1	1	96	0	1	0	0	0	0	0	0	0	13041	609	21	2		2	RAB3C	5	57913383	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3635599	57913383	123001877	434	96110											
RAB3C	115827	broad.mit.edu	37	chr5	58022099	58022099	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatttaaaaaaaaatgctgTttatgcacagaagcattatt	5	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58022099	C	C	58022099	1	2	96	0	1	0	0	0	0	0	0	0	13041	1740	60	5		5	RAB3C	5	58022099	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	108716	58022099	122893161	435	96111											
ADAMTS6	11174	broad.mit.edu	37	chr5	64511296	64511296	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccattaatatagtaatcaTctccttcagattttaaagct	3	9	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64511296	A	A	64511296	3	1	96	1	0	0	0	0	1	0	0	0	270	1435	50	5	1090	5	ADAMTS6	5	64511296	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	6489197	64511296	116403964	436	96112											
TAF9	6880	broad.mit.edu	37	chr5	68662287	68662288	+	Intron	INS	-	A	A													cactccacttaccagaccttINSaaaaaaaaaacaaaacaaat							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68662288	A	A	68662287	6	5	96	0	1	1	1	0	0	0	0	0	15654	1769	61	0		0	TAF9	5	68662287	Intron	INS	-	TCGA-38-4625-01A-01D-1553-08	4150991	68662287	112252973	437	96113											
BDP1	55814	broad.mit.edu	37	chr5	70800487	70800487	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaatcgcgtaaagattttGaagaggaagatgtcatatta	9	4	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70800487	C	C	70800487	3	2	96	1	0	0	0	0	1	0	0	0	1400	1291	45	4	2343	4	BDP1	5	70800487	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2138200	70800487	110114773	438	96114											
MCCC2	64087	broad.mit.edu	37	chr5	70895630	70895630	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataatgtgggttgagaagaaGactttgatgaggcacaggca	14	4	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70895630	A	A	70895630	1	1	96	0	1	0	0	0	0	0	0	0	9468	957	33	4		4	MCCC2	5	70895630	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	95143	70895630	110019630	439	96115											
MAP1B	4131	broad.mit.edu	37	chr5	71490888	71490888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaaacccctgaggtcaCaaaagtgaatcacgtggaaa	10	8	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71490888	A	A	71490888	3	1	96	1	0	0	0	0	1	0	0	0	9320	478	17	3	1724	3	MAP1B	5	71490888	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	595258	71490888	109424372	440	96116											
IQGAP2	10788	broad.mit.edu	37	chr5	75871615	75871615	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagggggaaaatgcagctaAaaggtgctctaagaagtaga	14	4	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75871615	T	T	75871615	1	4	96	0	1	0	0	0	0	0	0	0	7885	29	1	5		5	IQGAP2	5	75871615	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	4380727	75871615	105043645	441	96117											
DMGDH	29958	broad.mit.edu	37	chr5	78351539	78351539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacattaagcactccacaCggtcatacacaatgatgcat	5	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78351539	A	A	78351539	1	1	96	0	1	0	0	0	0	0	0	0	4621	551	19	3		3	DMGDH	5	78351539	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2479924	78351539	102563721	442	96118											
HOMER1	9456	broad.mit.edu	37	chr5	78697767	78697767	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgataggcagcaagttgCtgtttccattgtttcacatt	8	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78697767	T	T	78697767	2	4	96	1	0	0	0	0	0	0	0	1	7345	796	28	4		4	HOMER1	5	78697767	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	346228	78697767	102217493	443	96119											
VCAN	1462	broad.mit.edu	37	chr5	82816655	82816655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaaggataaagacatcCcaagtttcactgaagatgga	10	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82816655	A	A	82816655	3	1	96	1	0	0	0	0	1	0	0	0	17265	623	22	2	2552	2	VCAN	5	82816655	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4118888	82816655	98098605	444	96120											
VCAN	1462	broad.mit.edu	37	chr5	82832691	82832691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgagaaccatataagagGgtgattgcacttattatgaa	10	5	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82832691	T	T	82832691	1	4	96	0	1	0	0	0	0	0	0	0	17265	1247	43	2		2	VCAN	5	82832691	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	16036	82832691	98082569	445	96121											
MEF2C	4208	broad.mit.edu	37	chr5	88100465	88100465	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcggctcgttgtactccgTgtacttgagaagcactttgt	11	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88100465	G	G	88100465	3	3	96	1	0	0	0	0	1	0	0	0	9550	1696	59	5	1391	5	MEF2C	5	88100465	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	5267774	88100465	92814795	446	96122											
GPR98	84059	broad.mit.edu	37	chr5	90159564	90159564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccatatgtggacttttttGttcctacaggtctttgcttg	8	8	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90159564	T	T	90159564	1	4	96	0	1	0	0	0	0	0	0	0	6787	1392	48	3		3	GPR98	5	90159564	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2059099	90159564	90755696	447	96123											
ERAP2	64167	broad.mit.edu	37	chr5	96215552	96215553	+	Frame_Shift_Ins	INS	-	T	T													ggatcctggggctttcccagINStagccactaatggggaacga							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96215553	T	T	96215552	7	5	96	1	0	1	1	0	0	0	0	0	5246	1029	36	0	165	0	ERAP2	5	96215552	Frame_Shift_Ins	INS	-	TCGA-38-4625-01A-01D-1553-08	6055988	96215552	84699708	448	96124											
EPB41L4A	64097	broad.mit.edu	37	chr5	111598060	111598060	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgagagctgctttgtgttaGaaaaacagataaaaaagtat	9	4	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111598060	C	C	111598060	1	2	96	0	1	0	0	0	0	0	0	0	5197	957	33	4		4	EPB41L4A	5	111598060	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	15382508	111598060	69317200	449	96125											
HSD17B4	3295	broad.mit.edu	37	chr5	118824886	118824886	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgtatattctttatttcaGatcttgtggaagccctgaag	9	6	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118824886	T	T	118824886	5	4	96	1	0	0	0	0	0	0	1	0	7453	956	33	3	656	3	HSD17B4	5	118824886	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	7226826	118824886	62090374	450	96126											
ZNF474	133923	broad.mit.edu	37	chr5	121488479	121488479	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagccactcccacagaAgcctcagccccttccgaatg	6	20	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121488479	C	C	121488479	3	2	96	1	0	0	0	0	1	0	0	0	18059	72	3	5	796	5	ZNF474	5	121488479	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	2663593	121488479	59426781	451	96127											
CSNK1G3	1456	broad.mit.edu	37	chr5	122950203	122950203	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggactcactcttagaaacAaaaatgtcatactttcatac	4	9	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122950203	C	C	122950203	1	2	96	0	1	0	0	0	0	0	0	0	3990	145	5	5		5	CSNK1G3	5	122950203	3'UTR	SNP	A	TCGA-38-4625-01A-01D-1553-08	1461724	122950203	57965057	452	96128											
P4HA2	8974	broad.mit.edu	37	chr5	131544999	131544999	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgctcaaagtaccgcagattCcctccagctcgttcgtggct	9	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131544999	G	G	131544999	2	3	96	1	0	0	0	0	0	0	0	1	11451	842	30	4		4	P4HA2	5	131544999	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	8594796	131544999	49370261	453	96129											
KIF3A	11127	broad.mit.edu	37	chr5	132051343	132051343	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattcatttaactaccaatgTtagaggctcaaaaaaggttt	6	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132051343	A	A	132051343	1	1	96	0	1	0	0	0	0	0	0	0	8370	1740	60	5		5	KIF3A	5	132051343	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	506344	132051343	48863917	454	96130											
GDF9	2661	broad.mit.edu	37	chr5	132199862	132199862	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaggagcctgcttgtgccGggtacagggggtgaagagcc	17	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132199862	A	A	132199862	3	1	96	1	0	0	0	0	1	0	0	0	6383	1115	39	4	1008	4	GDF9	5	132199862	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	148519	132199862	48715398	455	96131											
SAR1B	51128	broad.mit.edu	37	chr5	133948372	133948372	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaatcttaccttgaacatgtc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133948372	-	-	133948372	6	5	96	0	1	1	0	1	0	0	0	0	13952	957	33	0		0	SAR1B	5	133948372	Intron	DEL	G	TCGA-38-4625-01A-01D-1553-08	1748510	133948372	46966888	456	96132											
SEC24A	10802	broad.mit.edu	37	chr5	134032792	134032792	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaatgattttttaaaatgtCtctttataatttattataaa	3	2	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134032792	T	T	134032792	1	4	96	0	1	0	0	0	0	0	0	0	14107	928	32	4		4	SEC24A	5	134032792	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	84420	134032792	46882468	457	96133											
SPOCK1	6695	broad.mit.edu	37	chr5	136602831	136602831	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acctgccttccttttcacctCccaaaacacaaaggaaaaca	3	15	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136602831	G	G	136602831	1	3	96	0	1	0	0	0	0	0	0	0	15197	870	30	4		4	SPOCK1	5	136602831	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2570039	136602831	44312429	458	96134											
PCDHA9	9752	broad.mit.edu	37	chr5	140230312	140230312	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgctggtgtgttctagcgcGgtggggagttggtcgtactc	17	8	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140230312	C	C	140230312	2	2	96	1	0	0	0	0	0	0	0	1	11625	1103	39	4		4	PCDHA9	5	140230312	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	3627481	140230312	40684948	459	96135											
PCDHA11	56138	broad.mit.edu	37	chr5	140248772	140248772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattctgggaggtggggagCggccagctccactactccgt	15	11	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140248772	A	A	140248772	3	1	96	1	0	0	0	0	1	0	0	0	11615	767	27	3	86	3	PCDHA11	5	140248772	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	18460	140248772	40666488	460	96136											
PCDHA11	56138	broad.mit.edu	37	chr5	140250061	140250061	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcgttcgcacagcccgAgtacaccgtgttcgtgaagg	13	13	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140250061	T	T	140250061	3	4	96	1	0	0	0	0	1	0	0	0	11615	304	11	5	1375	5	PCDHA11	5	140250061	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	1289	140250061	40665199	461	96137											
PCDHB8	56128	broad.mit.edu	37	chr5	140559862	140559862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgggagcctgtctcagaaCtatcagtacgaggtgtgcct	12	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559862	A	A	140559862	3	1	96	1	0	0	0	0	1	0	0	0	11642	564	20	3	2249	3	PCDHB8	5	140559862	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	309801	140559862	40355398	462	96138											
PCDHB9	56127	broad.mit.edu	37	chr5	140568793	140568793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgctgagcgagcgcgaCgcagccaagcacaggctggt	16	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140568793	A	A	140568793	3	1	96	1	0	0	0	0	1	0	0	0	11643	536	19	3	1903	3	PCDHB9	5	140568793	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	8931	140568793	40346467	463	96139											
PCDHB11	56125	broad.mit.edu	37	chr5	140580418	140580418	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaattaccagtccaatcccAgaaaatacgccagagaccgt	6	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140580418	T	T	140580418	2	4	96	1	0	0	0	0	0	0	0	1	11630	175	7	5		5	PCDHB11	5	140580418	Silent	SNP	A	TCGA-38-4625-01A-01D-1553-08	11625	140580418	40334842	464	96140											
PCDHB13	56123	broad.mit.edu	37	chr5	140594856	140594856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattagttgctccattcaGgaggatctacccttcctcct	6	12	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140594856	T	T	140594856	3	4	96	1	0	0	0	0	1	0	0	0	11632	991	35	2	1163	2	PCDHB13	5	140594856	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	14438	140594856	40320404	465	96141											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720932	140720932	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagcgcctcaatctctactCgaagaagaaagagaagaaac	8	10	3	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140720932	A	A	140720932	2	1	96	1	0	0	0	0	0	0	0	1	11648	871	31	3		3	PCDHGA2	5	140720932	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	126076	140720932	40194328	466	96142											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730944	140730944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcgagacaaggattctGggcaaaatggcatggtgaca	14	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140730944	T	T	140730944	3	4	96	1	0	0	0	0	1	0	0	0	11656	1348	47	2	1119	2	PCDHGB1	5	140730944	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	10012	140730944	40184316	467	96143											
PCDHGA2	56113	broad.mit.edu	37	chr5	140734678	140734678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagctctggctgtgaatgCactttattttggacccagaa	11	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140734678	A	A	140734678	1	1	96	0	1	0	0	0	0	0	0	0	11648	725	25	3		3	PCDHGA2	5	140734678	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3734	140734678	40180582	468	96144											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740261	140740261	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgctgagaaacagactccaGatggtcgtaaatatcctgag	10	9	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140740261	T	T	140740261	3	4	96	1	0	0	0	0	1	0	0	0	11657	942	33	3	561	3	PCDHGB2	5	140740261	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5583	140740261	40174999	469	96145											
PCDHGA7	56108	broad.mit.edu	37	chr5	140764549	140764549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcacgttgtacctggtgGtggcggtggccacagtctcc	13	13	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140764549	T	T	140764549	3	4	96	1	0	0	0	0	1	0	0	0	11653	1261	44	3	2085	3	PCDHGA7	5	140764549	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	24288	140764549	40150711	470	96146											
PCDHGB5	56101	broad.mit.edu	37	chr5	140779511	140779511	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcctaccacgtgctgcAggctagcgagcccgggctct	13	15	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140779511	T	T	140779511	3	4	96	1	0	0	0	0	1	0	0	0	11660	188	7	5	1819	5	PCDHGB5	5	140779511	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	14962	140779511	40135749	471	96147											
DIAPH1	1729	broad.mit.edu	37	chr5	140951407	140951409	+	Intron	TNP	CAG	ATT	ATT													ataccctttctatcttcaccCagggaagggaagggaatagg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATT	140951409	ATT	ATT	140951407	1	1	96	0	1	0	0	0	0	0	0	0	4558	609	21	2		2	DIAPH1	5	140951407	Intron	TNP	CAG	TCGA-38-4625-01A-01D-1553-08	171896	140951407	39963853	472	96148											
ARAP3	64411	broad.mit.edu	37	chr5	141059692	141059692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggacactcctggtcccCcgagggctgggctcagccca	12	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141059692	A	A	141059692	3	1	96	1	0	0	0	0	1	0	0	0	842	623	22	2	4400	2	ARAP3	5	141059692	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	108285	141059692	39855568	473	96149											
RBM27	54439	broad.mit.edu	37	chr5	145610502	145610502	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaaatcaccaccttttctCatattgtgcccaaaagtact	3	11	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145610502	T	T	145610502	1	4	96	0	1	0	0	0	0	0	0	0	13235	841	29	4		4	RBM27	5	145610502	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4550810	145610502	35304758	474	96150											
PPP2R2B	5521	broad.mit.edu	37	chr5	146070760	146070760	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagattgtagccttctggCctcttatcacgctcgctgac	8	13	4	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146070760	T	T	146070760	2	4	96	1	0	0	0	0	0	0	0	1	12486	738	26	4		4	PPP2R2B	5	146070760	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	460258	146070760	34844500	475	96151											
ABLIM3	22885	broad.mit.edu	37	chr5	148637840	148637840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccccccacccccgcctgcCctgcctccttcagcgccacc	6	26	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148637840	A	A	148637840	1	1	96	0	1	0	0	0	0	0	0	0	96	638	22	2		2	ABLIM3	5	148637840	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2567080	148637840	32277420	476	96152											
PPARGC1B	133522	broad.mit.edu	37	chr5	149206292	149206292	+	Frame_Shift_Del	DEL	C	-	-													accaagaccctggatgacatCcctgaagatgacgtgggtct							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149206292	-	-	149206292	7	5	96	1	0	1	0	1	0	0	0	0	12397	845	30	0	326	0	PPARGC1B	5	149206292	Frame_Shift_Del	DEL	C	TCGA-38-4625-01A-01D-1553-08	568452	149206292	31708968	477	96153											
PDE6A	5145	broad.mit.edu	37	chr5	149311801	149311801	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccataaagagaatcatttCtgaccagctgtccattttgg	8	9	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149311801	G	G	149311801	1	3	96	0	1	0	0	0	0	0	0	0	11739	928	32	4		4	PDE6A	5	149311801	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	105509	149311801	31603459	478	96154											
PDE6A	5145	broad.mit.edu	37	chr5	149312189	149312189	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattcgctgactaatgccttCagtatattccatttcgtacg	6	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149312189	T	T	149312189	1	4	96	0	1	0	0	0	0	0	0	0	11739	841	29	4		4	PDE6A	5	149312189	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	388	149312189	31603071	479	96155											
PDE6A	5145	broad.mit.edu	37	chr5	149312214	149312214	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattccatttcgtacgaattCgactaatttctgccatctca	4	11	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149312214	T	T	149312214	1	4	96	0	1	0	0	0	0	0	0	0	11739	899	31	4		4	PDE6A	5	149312214	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	25	149312214	31603046	480	96156											
TIMD4	91937	broad.mit.edu	37	chr5	156381592	156381592	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatattttgctgactttctTgaggtcaccctcattccatc	5	12	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156381592	A	A	156381592	2	1	96	1	0	0	0	0	0	0	0	1	16026	1799	63	5		5	TIMD4	5	156381592	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	7069378	156381592	24533668	481	96157											
FAM71B	153745	broad.mit.edu	37	chr5	156589540	156589540	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctccagctcctggccaCcctgggctttctccactttg	7	17	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156589540	T	T	156589540	3	4	96	1	0	0	0	0	1	0	0	0	5659	507	18	4	85	4	FAM71B	5	156589540	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	207948	156589540	24325720	482	96158											
GABRA6	2559	broad.mit.edu	37	chr5	161118889	161118889	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctctgacacattctcatttGattttgccataggattccca	5	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161118889	A	A	161118889	1	1	96	0	1	0	0	0	0	0	0	0	6225	1305	45	4		4	GABRA6	5	161118889	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4529349	161118889	19796371	483	96159											
GABRG2	2566	broad.mit.edu	37	chr5	161576338	161576338	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtatgtatcattttccatTggcaccattgaaatttttat	5	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161576338	C	C	161576338	1	2	96	0	1	0	0	0	0	0	0	0	6232	1827	63	5		5	GABRG2	5	161576338	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	457449	161576338	19338922	484	96160											
HMMR	3161	broad.mit.edu	37	chr5	162900351	162900351	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttccctgtgcctaaataGatgtgctttttaagataatt	6	6	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162900351	T	T	162900351	1	4	96	0	1	0	0	0	0	0	0	0	7309	957	33	3		3	HMMR	5	162900351	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1324013	162900351	18014909	485	96161											
SLIT3	6586	broad.mit.edu	37	chr5	168135053	168135053	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtcccgttattcttgcaCgggctggagaggcaggcatt	13	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168135053	T	T	168135053	2	4	96	1	0	0	0	0	0	0	0	1	14855	523	19	4		4	SLIT3	5	168135053	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	5234702	168135053	12780207	486	96162											
SLIT3	6586	broad.mit.edu	37	chr5	168175101	168175101	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaggcagaggcactggGggagccatgtttcctgtgcc	15	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168175101	A	A	168175101	1	1	96	0	1	0	0	0	0	0	0	0	14855	1247	43	4		4	SLIT3	5	168175101	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	40048	168175101	12740159	487	96163											
SLIT3	6586	broad.mit.edu	37	chr5	168180939	168180939	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctggttccctgtcagcaTcagctcctgcacgctggctg	11	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168180939	G	G	168180939	3	3	96	1	0	0	0	0	1	0	0	0	14855	1435	50	5	2892	5	SLIT3	5	168180939	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	5838	168180939	12734321	488	96164											
DOCK2	1794	broad.mit.edu	37	chr5	169188646	169188646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtgagtacacagcaccCttgctggggtggggtaaggg	17	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169188646	A	A	169188646	1	1	96	0	1	0	0	0	0	0	0	0	4727	696	24	2		2	DOCK2	5	169188646	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1007707	169188646	11726614	489	96165											
DOCK2	1794	broad.mit.edu	37	chr5	169494414	169494414	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccttagggagcattgcctCatttgaattcccaccccaag	7	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169494414	A	A	169494414	1	1	96	0	1	0	0	0	0	0	0	0	4727	841	29	3		3	DOCK2	5	169494414	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	305768	169494414	11420846	490	96166											
DOCK2	1794	broad.mit.edu	37	chr5	169507096	169507096	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcactgatctttcagAgacccagatctgcctcatgc	6	16	5	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169507096	C	C	169507096	1	2	96	0	1	0	0	0	0	0	0	0	4727	319	11	5		5	DOCK2	5	169507096	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	12682	169507096	11408164	491	96167											
KIAA1191	57179	broad.mit.edu	37	chr5	175777570	175777570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacagccacatttcaagcCatgaacactgaaggttttgt	7	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175777570	A	A	175777570	1	1	96	0	1	0	0	0	0	0	0	0	8282	609	21	2		2	KIAA1191	5	175777570	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	6270474	175777570	5137690	492	96168											
FAF2	23197	broad.mit.edu	37	chr5	175906005	175906005	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggaattatcatttttttaGttctttacgcatctagaaca	5	6	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175906005	C	C	175906005	1	2	96	0	1	0	0	0	0	0	0	0	5416	1044	36	4		4	FAF2	5	175906005	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	128435	175906005	5009255	493	96169											
CDHR2	54825	broad.mit.edu	37	chr5	176002979	176002979	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacacacctcaacatctaCgggcaggaggccaaggtgag	13	11	2	2	rs142354187	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176002979	A	A	176002979	4	1	96	1	0	0	0	0	0	1	0	0	3149	547	19	3	1029	3	CDHR2	5	176002979	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	96974	176002979	4912281	494	96170											
UNC5A	90249	broad.mit.edu	37	chr5	176295775	176295775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtacatggcagggctcCctcccctaggtggagtggct	15	12	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176295775	A	A	176295775	1	1	96	0	1	0	0	0	0	0	0	0	17117	638	22	2		2	UNC5A	5	176295775	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	292796	176295775	4619485	495	96171											
SLC34A1	6569	broad.mit.edu	37	chr5	176824679	176824679	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccctaagtggaaactttcCtgctgcccagaccagatcgg	9	14	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176824679	T	T	176824679	1	4	96	0	1	0	0	0	0	0	0	0	14681	696	24	4		4	SLC34A1	5	176824679	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	528904	176824679	4090581	496	96172											
COL23A1	91522	broad.mit.edu	37	chr5	177666129	177666129	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagcctgccctggagacttCcctgcacggtaccttatgcc	9	16	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177666129	T	T	177666129	1	4	96	0	1	0	0	0	0	0	0	0	3714	870	30	4		4	COL23A1	5	177666129	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	841450	177666129	3249131	497	96173											
ADAMTS2	9509	broad.mit.edu	37	chr5	178551970	178551970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgggatcgggggattgcGtacctgggaccagggcccgg	18	11	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178551970	T	T	178551970	1	4	96	0	1	0	0	0	0	0	0	0	265	1160	40	3		3	ADAMTS2	5	178551970	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	885841	178551970	2363290	498	96174											
F13A1	2162	broad.mit.edu	37	chr6	6305703	6305703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttttcatacttgtcaGtgtggtggtccaccttgtta	10	7	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6305703	T	T	6305703	3	4	96	1	0	0	0	0	1	0	0	0	5383	1029	36	3	2050	3	F13A1	6	6305703	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08		6305703	164809364	499	96175											
LY86	9450	broad.mit.edu	37	chr6	6626771	6626771	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgcccctcgcctttggacGagcttatcctcacttatcag	7	15	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6626771	A	A	6626771	1	1	96	0	1	0	0	0	0	0	0	0	9188	1073	37	4		4	LY86	6	6626771	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	321068	6626771	164488296	500	96176											
DSP	1832	broad.mit.edu	37	chr6	7585772	7585772	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggttcatagatggccgCgccgcacagaggctgcaaga	15	10	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7585772	A	A	7585772	2	1	96	1	0	0	0	0	0	0	0	1	4821	755	27	3		3	DSP	6	7585772	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	959001	7585772	163529295	501	96177											
HIVEP1	3096	broad.mit.edu	37	chr6	12136197	12136197	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcttccataccctttcCattcccactgattctgccta	3	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12136197	T	T	12136197	1	4	96	0	1	0	0	0	0	0	0	0	7253	609	21	4		4	HIVEP1	6	12136197	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4550425	12136197	158978870	502	96178											
RNF144B	255488	broad.mit.edu	37	chr6	18406460	18406460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggaaaaatagggtgagGggggtcaggagtgctgtggg	20	3	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18406460	T	T	18406460	1	4	96	0	1	0	0	0	0	0	0	0	13557	1247	43	2		2	RNF144B	6	18406460	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6270263	18406460	152708607	503	96179											
MRS2	57380	broad.mit.edu	37	chr6	24403396	24403396	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccgttgctgcctgcggccGccgagccaacctgattggaa	12	15	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24403396	C	C	24403396	3	2	96	1	0	0	0	0	1	0	0	0	9945	1087	38	4	124	4	MRS2	6	24403396	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5996936	24403396	146711671	504	96180											
FAM65B	9750	broad.mit.edu	37	chr6	24977273	24977273	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagctcaggagagcacccctCcaccccatttgcttgcagta	8	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24977273	T	T	24977273	1	4	96	0	1	0	0	0	0	0	0	0	5651	870	30	4		4	FAM65B	6	24977273	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	573877	24977273	146137794	505	96181											
BTN2A1	11120	broad.mit.edu	37	chr6	26465746	26465746	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accagcctgggcgataaagtGagaccctgtttaattaaaaa	9	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26465746	C	C	26465746	1	2	96	0	1	0	0	0	0	0	0	0	1570	1305	45	4		4	BTN2A1	6	26465746	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1488473	26465746	144649321	506	96182											
HIST1H1B	3009	broad.mit.edu	37	chr6	27835210	27835210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcgctttgcgcttagcaGcgccggcgccggcagccttc	13	17	0	0	rs141517982		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27835210	T	T	27835210	3	4	96	1	0	0	0	0	1	0	0	0	7190	971	34	3	586	3	HIST1H1B	6	27835210	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1369464	27835210	143279857	507	96183											
ZNF187	7741	broad.mit.edu	37	chr6	28244327	28244327	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcagaggagttcacacctCgtcagacatcagaaaatcca	7	11	4	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28244327	T	T	28244327	2	4	96	1	0	0	0	0	0	0	0	1	17879	871	31	4		4	ZNF187	6	28244327	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	409117	28244327	142870740	508	96184											
HLA-G	3135	broad.mit.edu	37	chr6	29974692	29974692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtgcgggtcgacagtgaCgccgtgagtctgaggatgaa	16	8	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29974692	A	A	29974692	1	1	96	0	1	0	0	0	0	0	0	0	7279	551	19	3		3	HLA-G	6	29974692	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1730365	29974692	141140375	509	96185											
MSH5	4439	broad.mit.edu	37	chr6	31713049	31713049	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagagtgagtctcacccctCagtgtacaaagtggccagtg	11	10	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31713049	T	T	31713049	3	4	96	1	0	0	0	0	1	0	0	0	9967	838	29	4	800	4	MSH5	6	31713049	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1738357	31713049	139402018	510	96186											
MSH5	4439	broad.mit.edu	37	chr6	31713140	31713140	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacattacaaagacctaccAgaaaagcaattggctccaaa	5	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31713140	G	G	31713140	1	3	96	0	1	0	0	0	0	0	0	0	9967	203	7	5		5	MSH5	6	31713140	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	91	31713140	139401927	511	96187											
NOTCH4	4855	broad.mit.edu	37	chr6	32170317	32170317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagacacaggcctccgtgGtggcagtgatggaagccgca	16	11	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32170317	T	T	32170317	3	4	96	1	0	0	0	0	1	0	0	0	10646	1252	44	3	2760	3	NOTCH4	6	32170317	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	457177	32170317	138944750	512	96188											
HLA-DRB5	3127	broad.mit.edu	37	chr6	32546912	32546913	+	Intron	INS	-	G	G													agaggagagtgttgttttcaINSacctggctctactaacagtt					rs34252386		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32546913	G	G	32546912	6	5	96	0	1	1	1	0	0	0	0	0	7276	145	5	0		0	HLA-DRB5	6	32546912	Intron	INS	-	TCGA-38-4625-01A-01D-1553-08	376595	32546912	138568155	513	96189											
COL11A2	1302	broad.mit.edu	37	chr6	33144976	33144976	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accttctctccatgagggccGatggcaccctggggcccggg	14	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33144976	A	A	33144976	2	1	96	1	0	0	0	0	0	0	0	1	3700	1048	37	4		4	COL11A2	6	33144976	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	598064	33144976	137970091	514	96190											
GRM4	2914	broad.mit.edu	37	chr6	34003554	34003554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctcattgaaggtctcgGgcacgccgcgtgtcttgatg	14	11	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34003554	T	T	34003554	3	4	96	1	0	0	0	0	1	0	0	0	6865	1232	43	2	417	2	GRM4	6	34003554	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	858578	34003554	137111513	515	96191											
LHFPL5	222662	broad.mit.edu	37	chr6	35773736	35773737	+	Missense_Mutation	DNP	GC	TT	TT													cctctagagccttcaagactGccatgttctttgtggccttg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	35773737	TT	TT	35773736	3	4	96	1	0	0	0	0	1	0	0	0	8840	1319	46	3	291	3	LHFPL5	6	35773736	Missense_Mutation	DNP	GC	TCGA-38-4625-01A-01D-1553-08	1770182	35773736	135341331	516	96192											
C6orf222	389384	broad.mit.edu	37	chr6	36294173	36294173	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccactcagggcagagtgcAaaagtcagaccaggcacaac	10	13	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36294173	T	T	36294173	1	4	96	0	1	0	0	0	0	0	0	0	2379	145	5	5		5	C6orf222	6	36294173	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	520437	36294173	134820894	517	96193											
KCTD20	222658	broad.mit.edu	37	chr6	36455032	36455032	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctccctcgtgatttgtctCaccttgagtaggagacatgc	9	13	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36455032	G	G	36455032	1	3	96	0	1	0	0	0	0	0	0	0	8178	841	29	4		4	KCTD20	6	36455032	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	160859	36455032	134660035	518	96194											
CPNE5	57699	broad.mit.edu	37	chr6	36710313	36710313	+	Intron	DEL	C	-	-													tgcctcctgtgggaccctggCccccaaaatctccaggcctg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36710313	-	-	36710313	6	5	96	0	1	1	0	1	0	0	0	0	3847	754	26	0		0	CPNE5	6	36710313	Intron	DEL	C	TCGA-38-4625-01A-01D-1553-08	255281	36710313	134404754	519	96195											
FOXP4	116113	broad.mit.edu	37	chr6	41556419	41556419	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgccctggatgaccggagtAcagcccagtgccgggtacag	14	13	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41556419	G	G	41556419	3	3	96	1	0	0	0	0	1	0	0	0	6089	391	14	5	1045	5	FOXP4	6	41556419	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	4846106	41556419	129558648	520	96196											
MED20	9477	broad.mit.edu	37	chr6	41888678	41888678	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaggacggcggaccatggtCaaggtcctctttccggcctt	13	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41888678	G	G	41888678	1	3	96	0	1	0	0	0	0	0	0	0	9531	841	29	4		4	MED20	6	41888678	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	332259	41888678	129226389	521	96197											
PTK7	5754	broad.mit.edu	37	chr6	43127622	43127622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaccaagtctgatgtctgGgccttcggtgtgctgatgtg	13	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43127622	T	T	43127622	3	4	96	1	0	0	0	0	1	0	0	0	12871	1241	43	2	3044	2	PTK7	6	43127622	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1238944	43127622	127987445	522	96198											
AARS2	57505	broad.mit.edu	37	chr6	44269927	44269927	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctatggccagaagcagtacAtcacccctgcccttccctga	7	17	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44269927	G	G	44269927	1	3	96	0	1	0	0	0	0	0	0	0	20	232	8	5		5	AARS2	6	44269927	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1142305	44269927	126845140	523	96199											
PLA2G7	7941	broad.mit.edu	37	chr6	46676981	46676981	+	Intron	DEL	A	-	-													gagatcccttcttcactaagAatttgaataaaaaattatat							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46676981	-	-	46676981	6	5	96	0	1	1	0	1	0	0	0	0	12104	261	9	0		0	PLA2G7	6	46676981	Intron	DEL	A	TCGA-38-4625-01A-01D-1553-08	2407054	46676981	124438086	524	96200											
OPN5	221391	broad.mit.edu	37	chr6	47779311	47779312	+	Intron	INS	-	T	T													tgtgcacataatcctcatagINStagtcgtttgacatatacat							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47779312	T	T	47779311	6	5	96	0	1	1	1	0	0	0	0	0	10977	1044	36	0		0	OPN5	6	47779311	Intron	INS	-	TCGA-38-4625-01A-01D-1553-08	1102330	47779311	123335756	525	96201											
CENPQ	55166	broad.mit.edu	37	chr6	49448834	49448834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccataattagagagttagGgaaagggaagaagaccaaag	12	4	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49448834	T	T	49448834	1	4	96	0	1	0	0	0	0	0	0	0	3271	1247	43	2		2	CENPQ	6	49448834	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1669523	49448834	121666233	526	96202											
PKHD1	5314	broad.mit.edu	37	chr6	51612663	51612663	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaggccactgatttggttCtgaggtgaatacaggccaca	12	9	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51612663	A	A	51612663	4	1	96	1	0	0	0	0	0	1	0	0	12066	922	32	3	2552	3	PKHD1	6	51612663	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2163829	51612663	119502404	527	96203											
IL17A	3605	broad.mit.edu	37	chr6	52054023	52054023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgccccaactccttccGgctggagaagatactggtgt	10	13	0	2	rs147810050	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52054023	T	T	52054023	3	4	96	1	0	0	0	0	1	0	0	0	7704	1116	39	1	411	1	IL17A	6	52054023	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	441360	52054023	119061044	528	96204											
IL17F	112744	broad.mit.edu	37	chr6	52103574	52103575	+	Missense_Mutation	DNP	TG	AT	AT													gctctcgatgttacgtgacaTggaaacgcgctggttttcat							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	52103575	AT	AT	52103574	3	1	96	1	0	0	0	0	1	0	0	0	7708	1464	51	5	291	5	IL17F	6	52103574	Missense_Mutation	DNP	TG	TCGA-38-4625-01A-01D-1553-08	49551	52103574	119011493	529	96205											
GSTA5	221357	broad.mit.edu	37	chr6	52701245	52701245	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaaatggttatggaaAtgactaaatttgtgaaatga	9	1	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52701245	T	T	52701245	1	4	96	0	1	0	0	0	0	0	0	0	6900	116	4	5		5	GSTA5	6	52701245	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	597671	52701245	118413822	530	96206											
GFRAL	389400	broad.mit.edu	37	chr6	55223966	55223966	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaataaaattatctgtctAtctatctatctatctatcat	1	9	7	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55223966	T	T	55223966	1	4	96	0	1	0	0	0	0	0	0	0	6415	464	16	5		5	GFRAL	6	55223966	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2522721	55223966	115891101	531	96207											
GFRAL	389400	broad.mit.edu	37	chr6	55266491	55266492	+	Intron	DNP	CC	AA	AA													aacttgattagttttttcctCcaggtgcagactccagcaaa							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55266492	AA	AA	55266491	1	1	96	0	1	0	0	0	0	0	0	0	6415	870	30	3		3	GFRAL	6	55266491	Intron	DNP	CC	TCGA-38-4625-01A-01D-1553-08	42525	55266491	115848576	532	96208											
COL21A1	81578	broad.mit.edu	37	chr6	55988989	55988989	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagacagatactataagataGattttatttaaagcaaaata	5	3	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55988989	T	T	55988989	1	4	96	0	1	0	0	0	0	0	0	0	3712	957	33	3		3	COL21A1	6	55988989	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	722498	55988989	115126078	533	96209											
DST	667	broad.mit.edu	37	chr6	56346986	56346987	+	Intron	DEL	CA	-	-													aattcctctgcctaagagttCacacacacacacaccccaaa							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56346987	-	-	56346986	6	5	96	0	1	1	0	1	0	0	0	0	4823	841	29	0		0	DST	6	56346986	Intron	DEL	CA	TCGA-38-4625-01A-01D-1553-08	357997	56346986	114768081	534	96210											
BAI3	577	broad.mit.edu	37	chr6	69646450	69646450	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcccagtggagcacatGttcggttacttgtggtcaag	14	8	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69646450	A	A	69646450	3	1	96	1	0	0	0	0	1	0	0	0	1305	1377	48	4	918	4	BAI3	6	69646450	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	13299464	69646450	101468617	535	96211											
COL19A1	1310	broad.mit.edu	37	chr6	70647993	70647993	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcataaaggagagccgGtaagaaaaaaacaaatactg	11	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70647993	T	T	70647993	5	4	96	1	0	0	0	0	0	0	1	0	3708	1275	44	3	967	3	COL19A1	6	70647993	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	1001543	70647993	100467074	536	96212											
C6orf57	135154	broad.mit.edu	37	chr6	71298475	71298475	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttctgaatatgtacatctGaattaacttatttctgatta	4	5	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71298475	T	T	71298475	1	4	96	0	1	0	0	0	0	0	0	0	2390	1305	45	3		3	C6orf57	6	71298475	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	650482	71298475	99816592	537	96213											
C6orf221	154288	broad.mit.edu	37	chr6	74073171	74073171	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggccaaattgaaccctcGttctgggatttctggctcct	10	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74073171	C	C	74073171	1	2	96	0	1	0	0	0	0	0	0	0	2378	1160	40	4		4	C6orf221	6	74073171	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2774696	74073171	97041896	538	96214											
COL12A1	1303	broad.mit.edu	37	chr6	75811566	75811566	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaattgaatagcaccaacttGaaggttaagaccagggtatg	11	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75811566	A	A	75811566	1	1	96	0	1	0	0	0	0	0	0	0	3701	1305	45	4		4	COL12A1	6	75811566	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1738395	75811566	95303501	539	96215											
COL12A1	1303	broad.mit.edu	37	chr6	75875472	75875472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtgatgtctttagtaaCtaaatcttgaggagaaccac	9	7	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75875472	A	A	75875472	3	1	96	1	0	0	0	0	1	0	0	0	3701	565	20	3	6669	3	COL12A1	6	75875472	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	63906	75875472	95239595	540	96216											
TMEM30A	55754	broad.mit.edu	37	chr6	75968408	75968408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaccaaaactaaagcaCaaggtaacatgccacataac	6	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75968408	A	A	75968408	1	1	96	0	1	0	0	0	0	0	0	0	16276	493	17	3		3	TMEM30A	6	75968408	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	92936	75968408	95146659	541	96217											
TMEM30A	55754	broad.mit.edu	37	chr6	75969253	75969253	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaactatctcttgaaaactCatagcatctgcttaactcta	3	11	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75969253	G	G	75969253	1	3	96	0	1	0	0	0	0	0	0	0	16276	841	29	4		4	TMEM30A	6	75969253	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	845	75969253	95145814	542	96218											
TTK	7272	broad.mit.edu	37	chr6	80741183	80741183	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatatattttacttatttaGgttttagcatcttcttcagc	4	6	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80741183	T	T	80741183	5	4	96	1	0	0	0	0	0	0	1	0	16846	1014	35	2	1571	2	TTK	6	80741183	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	4771930	80741183	90373884	543	96219											
DOPEY1	23033	broad.mit.edu	37	chr6	83845498	83845498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaactcagagggtttcaGtacagcgtgtacaagcagaa	10	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83845498	T	T	83845498	3	4	96	1	0	0	0	0	1	0	0	0	4747	1029	36	3	3101	3	DOPEY1	6	83845498	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3104315	83845498	87269569	544	96220											
SNAP91	9892	broad.mit.edu	37	chr6	84417473	84417473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaccagcatcccaggcGcctctgccgtgcgcatgtcc	10	19	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84417473	T	T	84417473	1	4	96	0	1	0	0	0	0	0	0	0	14947	1102	38	3		3	SNAP91	6	84417473	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	571975	84417473	86697594	545	96221											
HTR1E	3354	broad.mit.edu	37	chr6	87680719	87680719	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttggcaaatatggcatcatCtgcttggaggatctgattca	10	8	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87680719	A	A	87680719	1	1	96	0	1	0	0	0	0	0	0	0	7509	928	32	3		3	HTR1E	6	87680719	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3263246	87680719	83434348	546	96222											
MDN1	23195	broad.mit.edu	37	chr6	90424501	90424501	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaattcaaagaaaaaaatGattttaaatcccagtgcaac	5	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90424501	T	T	90424501	1	4	96	0	1	0	0	0	0	0	0	0	9508	1305	45	3		3	MDN1	6	90424501	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2743782	90424501	80690566	547	96223											
FHL5	9457	broad.mit.edu	37	chr6	97054037	97054037	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatgaactgatactattatGttatatctgtaatcaacaca	5	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97054037	C	C	97054037	1	2	96	0	1	0	0	0	0	0	0	0	5938	1392	48	4		4	FHL5	6	97054037	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6629536	97054037	74061030	548	96224											
KLHL32	114792	broad.mit.edu	37	chr6	97424052	97424052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgcagtgactatttccGggtaagtcagcattgtttgt	11	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97424052	T	T	97424052	3	4	96	1	0	0	0	0	1	0	0	0	8457	1130	39	1	209	1	KLHL32	6	97424052	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	370015	97424052	73691015	549	96225											
SFRS18	25957	broad.mit.edu	37	chr6	99857222	99857222	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccaaaagcagccccatgcTgaaagagtattgcagtttat	9	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99857222	A	A	99857222	5	1	96	1	0	0	0	0	0	0	1	0	14287	1594	55	5	1945	5	SFRS18	6	99857222	Splice_Site	SNP	T	TCGA-38-4625-01A-01D-1553-08	2433170	99857222	71257845	550	96226											
ASCC3	10973	broad.mit.edu	37	chr6	101075586	101075586	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggaagttaaacaagcccaTctagagtaaatatgagagag	10	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101075586	G	G	101075586	3	3	96	1	0	0	0	0	1	0	0	0	1037	1449	50	5	2142	5	ASCC3	6	101075586	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	1218364	101075586	70039481	551	96227											
DDO	8528	broad.mit.edu	37	chr6	110714689	110714689	+	Intron	SNP	C	A	A													gcttccagggcccagtcaggCcaaattctagccatcaactg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110714689	A	A	110714689	1	1	96	0	1	0	0	0	0	0	0	0	4367	754	26	3		3	DDO	6	110714689	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	9639103	110714689	60400378	552	96228	424	2									
DDO	8528	broad.mit.edu	37	chr6	110714692	110714692	+	Intron	SNP	A	C	C													tccagggcccagtcaggccaAattctagccatcaactgctt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110714692	C	C	110714692	1	2	96	0	1	0	0	0	0	0	0	0	4367	29	1	5		5	DDO	6	110714692	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3	110714692	60400375	553	96229	424	2									
SLC22A16	85413	broad.mit.edu	37	chr6	110763979	110763979	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagatagccacttgcaacCtgaaaaacaaataataggga	7	8	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763979	A	A	110763979	5	1	96	1	0	0	0	0	0	0	1	0	14560	695	24	2	1102	2	SLC22A16	6	110763979	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	49287	110763979	60351088	554	96230											
LAMA4	3910	broad.mit.edu	37	chr6	112493878	112493878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatccctgacatagttaaGggcctggtcaagtgcttcct	11	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112493878	T	T	112493878	3	4	96	1	0	0	0	0	1	0	0	0	8680	1000	35	2	4097	2	LAMA4	6	112493878	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1729899	112493878	58621189	555	96231											
DSE	29940	broad.mit.edu	37	chr6	116757588	116757588	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaatgtcaccatgcacCtccgaagtcccatcaccagg	8	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116757588	T	T	116757588	3	4	96	1	0	0	0	0	1	0	0	0	4814	681	24	4	1975	4	DSE	6	116757588	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4263710	116757588	54357479	556	96232											
MCM9	254394	broad.mit.edu	37	chr6	119252870	119252870	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacacttgaccaaccagtgTaacttgatcgctattcatct	5	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119252870	C	C	119252870	3	2	96	1	0	0	0	0	1	0	0	0	9487	1638	57	5	1180	5	MCM9	6	119252870	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	2495282	119252870	51862197	557	96233											
CLVS2	134829	broad.mit.edu	37	chr6	123376978	123376978	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatggtaacaacctgaacAgtctacaccaactaattcat	5	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123376978	C	C	123376978	3	2	96	1	0	0	0	0	1	0	0	0	3604	188	7	5	717	5	CLVS2	6	123376978	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	4124108	123376978	47738089	558	96234											
C6orf58	352999	broad.mit.edu	37	chr6	127902228	127902228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaaattcttcttttaTgtacaatattgctaaaatat	3	4	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127902228	C	C	127902228	1	2	96	0	1	0	0	0	0	0	0	0	2391	1479	51	5		5	C6orf58	6	127902228	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	4525250	127902228	43212839	559	96235											
PTPRK	5796	broad.mit.edu	37	chr6	128403663	128403663	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttatgaaaaactggtacgTggttccagggtggagatgca	13	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128403663	A	A	128403663	3	1	96	1	0	0	0	0	1	0	0	0	12913	1696	59	5	2732	5	PTPRK	6	128403663	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	501435	128403663	42711404	560	96236											
LAMA2	3908	broad.mit.edu	37	chr6	129712466	129712466	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgagaaacatattacatttCcctgtttgttactgattgtt	6	6	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129712466	T	T	129712466	1	4	96	0	1	0	0	0	0	0	0	0	8678	870	30	4		4	LAMA2	6	129712466	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1308803	129712466	41402601	561	96237											
TAAR9	134860	broad.mit.edu	37	chr6	132860409	132860409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaataaaacttattgtaagCggcaaggtcttaaggactga	10	6	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132860409	A	A	132860409	3	1	96	1	0	0	0	0	1	0	0	0	15613	767	27	3	983	3	TAAR9	6	132860409	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3147943	132860409	38254658	562	96238											
TAAR5	9038	broad.mit.edu	37	chr6	132910326	132910326	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catctgtgtagaggaataacGaagtgtatgctgcgggcacc	13	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132910326	T	T	132910326	4	4	96	1	0	0	0	0	0	1	0	0	15610	1059	37	3	517	3	TAAR5	6	132910326	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	49917	132910326	38204741	563	96239											
TAAR1	134864	broad.mit.edu	37	chr6	132967082	132967082	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtacagggaagcacggacatCatttgaccagttgtttttca	10	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132967082	A	A	132967082	3	1	96	1	0	0	0	0	1	0	0	0	15608	826	29	3	962	3	TAAR1	6	132967082	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	56756	132967082	38147985	564	96240											
EYA4	2070	broad.mit.edu	37	chr6	133767755	133767755	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacttttctctgctgcttActgctctaccaggtctatgg	7	12	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133767755	T	T	133767755	1	4	96	0	1	0	0	0	0	0	0	0	5374	406	14	5		5	EYA4	6	133767755	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	800673	133767755	37347312	565	96241											
EYA4	2070	broad.mit.edu	37	chr6	133833682	133833682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctggatttaaattttgtGgggtagaaatggtgccattt	11	4	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133833682	T	T	133833682	1	4	96	0	1	0	0	0	0	0	0	0	5374	1363	47	2		2	EYA4	6	133833682	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	65927	133833682	37281385	566	96242											
HBS1L	10767	broad.mit.edu	37	chr6	135299732	135299732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaataaatatagtatcaCcacttgtaaagaaagttacc	4	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135299732	A	A	135299732	1	1	96	0	1	0	0	0	0	0	0	0	7053	522	18	3		3	HBS1L	6	135299732	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1466050	135299732	35815335	567	96243											
MAP3K5	4217	broad.mit.edu	37	chr6	136913701	136913701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgtactcactgctgctgCtggtgtcctccaccagcaca	9	16	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136913701	A	A	136913701	3	1	96	1	0	0	0	0	1	0	0	0	9345	797	28	3	1230	3	MAP3K5	6	136913701	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1613969	136913701	34201366	568	96244											
ECT2L	345930	broad.mit.edu	37	chr6	139134500	139134500	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttacatactttaaaacaGaacaagtttaattcgtaagg	6	5	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139134500	T	T	139134500	1	4	96	0	1	0	0	0	0	0	0	0	4942	957	33	3		3	ECT2L	6	139134500	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2220799	139134500	31980567	569	96245											
HIVEP2	3097	broad.mit.edu	37	chr6	143074281	143074281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgatgaaggatctttgCtttcctctgtgcttgaagat	9	7	3	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143074281	A	A	143074281	3	1	96	1	0	0	0	0	1	0	0	0	7254	797	28	3	40	3	HIVEP2	6	143074281	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3939781	143074281	28040786	570	96246											
SHPRH	257218	broad.mit.edu	37	chr6	146248482	146248482	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccaatgtcatctagttgtCcattatttaagaatactgta	5	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146248482	T	T	146248482	1	4	96	0	1	0	0	0	0	0	0	0	14404	870	30	4		4	SHPRH	6	146248482	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3174201	146248482	24866585	571	96247											
GRM1	2911	broad.mit.edu	37	chr6	146669706	146669706	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagatggacacaaacacacAaactctgtgtttattttgga	7	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146669706	G	G	146669706	1	3	96	0	1	0	0	0	0	0	0	0	6862	145	5	5		5	GRM1	6	146669706	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	421224	146669706	24445361	572	96248											
SYNE1	23345	broad.mit.edu	37	chr6	152489339	152489339	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtcctccgccaccaccaTgaagcttccacttgcaaaag	7	16	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152489339	C	C	152489339	1	2	96	0	1	0	0	0	0	0	0	0	15564	1479	51	5		5	SYNE1	6	152489339	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	5819633	152489339	18625728	573	96249											
SYNE1	23345	broad.mit.edu	37	chr6	152651069	152651069	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcctcttggatgtcctgCaggttgaggtctaggtacac	11	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152651069	A	A	152651069	2	1	96	1	0	0	0	0	0	0	0	1	15564	697	25	3		3	SYNE1	6	152651069	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	161730	152651069	18463998	574	96250											
SYNE1	23345	broad.mit.edu	37	chr6	152722272	152722272	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgatagtttattacctaCcttgacttttttcaatgctt	4	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152722272	A	A	152722272	5	1	96	1	0	0	0	0	0	0	1	0	15564	521	18	3	19836	3	SYNE1	6	152722272	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	71203	152722272	18392795	575	96251											
TIAM2	26230	broad.mit.edu	37	chr6	155451515	155451515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgcgacggatcagtgactgGacgggaagcctctcaaggaa	14	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155451515	T	T	155451515	3	4	96	1	0	0	0	0	1	0	0	0	16014	1183	41	3	1160	3	TIAM2	6	155451515	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2729243	155451515	15663552	576	96252											
TIAM2	26230	broad.mit.edu	37	chr6	155532366	155532366	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacgtccctgatatcacaacAggtctgaaaaggagtcagac	9	10	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155532366	T	T	155532366	2	4	96	1	0	0	0	0	0	0	0	1	16014	175	7	5		5	TIAM2	6	155532366	Silent	SNP	A	TCGA-38-4625-01A-01D-1553-08	80851	155532366	15582701	577	96253											
IGF2R	3482	broad.mit.edu	37	chr6	160431833	160431833	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaggtaacatgggaacttCaaattacatgcttatgaagt	10	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160431833	G	G	160431833	1	3	96	0	1	0	0	0	0	0	0	0	7646	841	29	4		4	IGF2R	6	160431833	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4899467	160431833	10683234	578	96254											
LPA	4018	broad.mit.edu	37	chr6	160968679	160968679	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacacgcgtggggctttgcTggcctgtgctgcttgcactt	13	13	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160968679	A	A	160968679	1	1	96	0	1	0	0	0	0	0	0	0	8990	1595	55	5		5	LPA	6	160968679	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	536846	160968679	10146388	579	96255											
PDE10A	10846	broad.mit.edu	37	chr6	165806029	165806030	+	Intron	DEL	TG	-	-													tgatttattaagccaaaattTgtcttggaataacatgtcac							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165806030	-	-	165806029	6	5	96	0	1	1	0	1	0	0	0	0	11724	1827	63	0		0	PDE10A	6	165806029	Intron	DEL	TG	TCGA-38-4625-01A-01D-1553-08	4837350	165806029	5309038	580	96256											
PDE10A	10846	broad.mit.edu	37	chr6	165806385	165806385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatgtctgtacccttataCatttgcaactctaaagattt	4	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165806385	A	A	165806385	1	1	96	0	1	0	0	0	0	0	0	0	11724	493	17	3		3	PDE10A	6	165806385	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	356	165806385	5308682	581	96257											
UNC93A	54346	broad.mit.edu	37	chr6	167708042	167708042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggcctgggtgtcacagCgctcagcaccctctatggag	15	12	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167708042	A	A	167708042	3	1	96	1	0	0	0	0	1	0	0	0	17122	768	27	3	131	3	UNC93A	6	167708042	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1901657	167708042	3407025	582	96258											
TCP10	6953	broad.mit.edu	37	chr6	167791289	167791289	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaggatcttgtttgaaaGgcatgcacccatgtccttgg	11	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167791289	T	T	167791289	1	4	96	0	1	0	0	0	0	0	0	0	15832	1015	35	2		2	TCP10	6	167791289	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	83247	167791289	3323778	583	96259											
THBS2	7058	broad.mit.edu	37	chr6	169626293	169626293	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggtcagggttgtgcacCagggggcagttgtcacagtg	16	9	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169626293	A	A	169626293	2	1	96	1	0	0	0	0	0	0	0	1	15977	581	21	2		2	THBS2	6	169626293	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1835004	169626293	1488774	584	96260											
SUN1	23353	broad.mit.edu	37	chr7	888109	888109	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggccagatacactgcatCatctttttcatcatttttag	6	10	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	888109	T	T	888109	1	4	96	0	1	0	0	0	0	0	0	0	15509	841	29	4		4	SUN1	7	888109	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08		888109	158250554	585	96261											
MAD1L1	8379	broad.mit.edu	37	chr7	1997256	1997256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacccagaggctgccccGccctcacctgcagagctcgc	9	21	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1997256	T	T	1997256	1	4	96	0	1	0	0	0	0	0	0	0	9235	1102	38	3		3	MAD1L1	7	1997256	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1109147	1997256	157141407	586	96262											
COL28A1	340267	broad.mit.edu	37	chr7	7412815	7412815	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctctttatcacgagaatCtgtctgtccatcagtgatga	7	9	5	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7412815	T	T	7412815	3	4	96	1	0	0	0	0	1	0	0	0	3718	913	32	4	671	4	COL28A1	7	7412815	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	5415559	7412815	151725848	587	96263											
COL28A1	340267	broad.mit.edu	37	chr7	7420254	7420254	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgcaacaattttgcaagcAcaaaaccctcaattaccctc	3	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7420254	G	G	7420254	1	3	96	0	1	0	0	0	0	0	0	0	3718	174	6	5		5	COL28A1	7	7420254	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	7439	7420254	151718409	588	96264											
COL28A1	340267	broad.mit.edu	37	chr7	7571510	7571510	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagagctgtccacgatgaaGacaatatctatgaaacaaat	7	8	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7571510	C	C	7571510	2	2	96	1	0	0	0	0	0	0	0	1	3718	929	33	4		4	COL28A1	7	7571510	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	151256	7571510	151567153	589	96265											
NDUFA4	4697	broad.mit.edu	37	chr7	10979834	10979834	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggctgggagggcagcttgCggcaggagggcccggatgcg	21	9	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10979834	G	G	10979834	1	3	96	0	1	0	0	0	0	0	0	0	10361	783	27	4		4	NDUFA4	7	10979834	5'Flank	SNP	C	TCGA-38-4625-01A-01D-1553-08	3408324	10979834	148158829	590	96266											
THSD7A	221981	broad.mit.edu	37	chr7	11445871	11445871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatatgcaaccccttcacGgcccttgtcctaggaaaaaa	6	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11445871	T	T	11445871	1	4	96	0	1	0	0	0	0	0	0	0	16002	1131	39	1		1	THSD7A	7	11445871	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	466037	11445871	147692792	591	96267											
SP4	6671	broad.mit.edu	37	chr7	21521652	21521652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatcttcgctggcatactgGagaaagaccttttatatgca	8	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21521652	T	T	21521652	3	4	96	1	0	0	0	0	1	0	0	0	15080	1174	41	3	2036	3	SP4	7	21521652	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	10075781	21521652	137617011	592	96268											
DNAH11	8701	broad.mit.edu	37	chr7	21603895	21603895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaattcccacagacacgCatattaatcgctccattatt	5	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21603895	A	A	21603895	2	1	96	1	0	0	0	0	0	0	0	1	4639	697	25	3		3	DNAH11	7	21603895	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	82243	21603895	137534768	593	96269											
GPNMB	10457	broad.mit.edu	37	chr7	23313759	23313759	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaggcctgagtgtctttctCaaccgtgcaaaagccgtgtt	10	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23313759	T	T	23313759	2	4	96	1	0	0	0	0	0	0	0	1	6685	813	29	4		4	GPNMB	7	23313759	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1709864	23313759	135824904	594	96270											
MPP6	51678	broad.mit.edu	37	chr7	24726949	24726949	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaagattaataccagaAttaccagaaatatatctaac	4	6	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24726949	G	G	24726949	1	3	96	0	1	0	0	0	0	0	0	0	9832	116	4	5		5	MPP6	7	24726949	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1413190	24726949	134411714	595	96271											
NPVF	64111	broad.mit.edu	37	chr7	25266430	25266430	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaacacgtctcacgaggctCacctccatatttcttccaga	7	14	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25266430	T	T	25266430	2	4	96	1	0	0	0	0	0	0	0	1	10700	813	29	4		4	NPVF	7	25266430	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	539481	25266430	133872233	596	96272											
HOXA5	3202	broad.mit.edu	37	chr7	27181683	27181683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccgtccgggcccttttgCcttccgggccgcctatgttg	13	15	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27181683	A	A	27181683	3	1	96	1	0	0	0	0	1	0	0	0	7362	739	26	3	232	3	HOXA5	7	27181683	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1915253	27181683	131956980	597	96273											
HOXA5	3202	broad.mit.edu	37	chr7	27183101	27183102	+	Nonsense_Mutation	DNP	GG	TT	TT													tagccgtagccgtacctgccGgagtgcatgctcgccgagtc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	27183102	TT	TT	27183101	4	4	96	1	0	0	0	0	0	1	0	0	7362	1103	39	1	694	1	HOXA5	7	27183101	Nonsense_Mutation	DNP	GG	TCGA-38-4625-01A-01D-1553-08	1418	27183101	131955562	598	96274											
CREB5	9586	broad.mit.edu	37	chr7	28609916	28609916	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattcccagttttggcctttGagagcttgagagtagaataa	11	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28609916	C	C	28609916	1	2	96	0	1	0	0	0	0	0	0	0	3892	1305	45	4		4	CREB5	7	28609916	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1426815	28609916	130528747	599	96275											
PDE1C	5137	broad.mit.edu	37	chr7	31793199	31793199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggaagacagacaacgGttagcctcacccacgacatg	11	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31793199	T	T	31793199	1	4	96	0	1	0	0	0	0	0	0	0	11729	1276	44	3		3	PDE1C	7	31793199	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3183283	31793199	127345464	600	96276											
FKBP9	11328	broad.mit.edu	37	chr7	33014683	33014683	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttgggattgtatagcggtGactgcttgaacccttttggc	12	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33014683	T	T	33014683	1	4	96	0	1	0	0	0	0	0	0	0	5972	1305	45	3		3	FKBP9	7	33014683	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1221484	33014683	126123980	601	96277											
BBS9	27241	broad.mit.edu	37	chr7	33217115	33217115	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgggtaatgtggaacatggGaaccaatgtcagatgaaatt	12	4	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33217115	T	T	33217115	2	4	96	1	0	0	0	0	0	0	0	1	1347	1161	41	3		3	BBS9	7	33217115	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	202432	33217115	125921548	602	96278											
BBS9	27241	broad.mit.edu	37	chr7	33423310	33423310	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcagagtgaacaatttgaaGatctttggctcataaccaat	7	7	3	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33423310	C	C	33423310	3	2	96	1	0	0	0	0	1	0	0	0	1347	942	33	4	1888	4	BBS9	7	33423310	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	206195	33423310	125715353	603	96279											
NPSR1	387129	broad.mit.edu	37	chr7	34873879	34873879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtataagggggcaggcatGgttaaaagatctgtcccttc	12	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34873879	T	T	34873879	1	4	96	0	1	0	0	0	0	0	0	0	10695	1363	47	2		2	NPSR1	7	34873879	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1450569	34873879	124264784	604	96280											
ELMO1	9844	broad.mit.edu	37	chr7	37284091	37284091	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaactcaggattagattTaggacagatttaactgccat	8	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37284091	A	A	37284091	1	1	96	0	1	0	0	0	0	0	0	0	5107	1769	61	5		5	ELMO1	7	37284091	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	2410212	37284091	121854572	605	96281											
TXNDC3	51314	broad.mit.edu	37	chr7	37907199	37907199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaacattcctttgcccaGggaccatggagagggaagat	13	8	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37907199	T	T	37907199	1	4	96	0	1	0	0	0	0	0	0	0	16924	1015	35	2		2	TXNDC3	7	37907199	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	623108	37907199	121231464	606	96282											
SFRP4	6424	broad.mit.edu	37	chr7	37951860	37951860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagatctcttttacatccaCcaccgttgtgacctcattgc	6	13	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37951860	T	T	37951860	3	4	96	1	0	0	0	0	1	0	0	0	14276	507	18	4	400	4	SFRP4	7	37951860	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	44661	37951860	121186803	607	96283											
TARP	445347	broad.mit.edu	37	chr7	38313335	38313335	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaatatttacataaatacaTaaaaattggccctgctgacg	5	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38313335	A	A	38313335	1	1	96	0	1	0	0	0	0	0	0	0	15677	1421	49	5		5	TARP	7	38313335	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	361475	38313335	120825328	608	96284											
AMPH	273	broad.mit.edu	37	chr7	38574616	38574616	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcttttggaggacctaaTttgcaaataaaacaaaatgg	8	7	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38574616	C	C	38574616	1	2	96	0	1	0	0	0	0	0	0	0	588	1508	52	5		5	AMPH	7	38574616	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	261281	38574616	120564047	609	96285											
CDK13	8621	broad.mit.edu	37	chr7	40041402	40041402	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaaatacatttaaagttaaGaaaaatgtcatctgcttttg	5	4	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40041402	C	C	40041402	1	2	96	0	1	0	0	0	0	0	0	0	3159	957	33	4		4	CDK13	7	40041402	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1466786	40041402	119097261	610	96286											
HECW1	23072	broad.mit.edu	37	chr7	43503439	43503439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacctgtgatggctttcaGgggctgtgtgacagagggct	15	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43503439	T	T	43503439	1	4	96	0	1	0	0	0	0	0	0	0	7109	1015	35	2		2	HECW1	7	43503439	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3462037	43503439	115635224	611	96287											
ADCY1	107	broad.mit.edu	37	chr7	45699649	45699649	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccttttgtaggaaggttcAtatcacaaagacgaccctag	8	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45699649	G	G	45699649	3	3	96	1	0	0	0	0	1	0	0	0	292	217	8	5	1342	5	ADCY1	7	45699649	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	2196210	45699649	113439014	612	96288											
LANCL2	55915	broad.mit.edu	37	chr7	55468765	55468768	+	Intron	DEL	CTCT	-	-													ttttagattaaggcttctgcCtctctctctatatatgtcat							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55468768	-	-	55468765	6	5	96	0	1	1	0	1	0	0	0	0	8693	696	24	0		0	LANCL2	7	55468765	Intron	DEL	CTCT	TCGA-38-4625-01A-01D-1553-08	9769116	55468765	103669898	613	96289											
MRPS17	51373	broad.mit.edu	37	chr7	56020790	56020790	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagaaaaaaactgtttctgGactaacctggacagttcttg	8	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56020790	T	T	56020790	1	4	96	0	1	0	0	0	0	0	0	0	9921	1189	41	3		3	MRPS17	7	56020790	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	552025	56020790	103117873	614	96290											
PSPH	5723	broad.mit.edu	37	chr7	56174054	56174054	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaaaccctgcgatggtctCacctggccggaggggccatg	13	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56174054	G	G	56174054	1	3	96	0	1	0	0	0	0	0	0	0	12823	841	29	4		4	PSPH	7	56174054	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	153264	56174054	102964609	615	96291											
ZNF479	90827	broad.mit.edu	37	chr7	57194386	57194386	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggcattgccattcctccaGagagaattctatagctatgt	8	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57194386	T	T	57194386	3	4	96	1	0	0	0	0	1	0	0	0	18060	933	33	3	1507	3	ZNF479	7	57194386	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1020332	57194386	101944277	616	96292											
ZNF716	441234	broad.mit.edu	37	chr7	57522940	57522940	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtcaaggaggaagccagtCcttaaaatgtggtctgggga	14	6	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57522940	A	A	57522940	1	1	96	0	1	0	0	0	0	0	0	0	18247	870	30	3		3	ZNF716	7	57522940	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	328554	57522940	101615723	617	96293											
WBSCR17	64409	broad.mit.edu	37	chr7	71036441	71036441	+	Intron	DEL	G	-	-													cccatgtttgtgagcagagcGtcttggtcatccgtggggtg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71036441	-	-	71036441	6	5	96	0	1	1	0	1	0	0	0	0	17391	1160	40	0		0	WBSCR17	7	71036441	Intron	DEL	G	TCGA-38-4625-01A-01D-1553-08	13513501	71036441	88102222	618	96294											
CALN1	83698	broad.mit.edu	37	chr7	71275273	71275273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatatagagagtgtggtgCattggcctgtcccggaccgg	14	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71275273	A	A	71275273	1	1	96	0	1	0	0	0	0	0	0	0	2617	725	25	3		3	CALN1	7	71275273	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	238832	71275273	87863390	619	96295											
TYW1B	441250	broad.mit.edu	37	chr7	72242352	72242352	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgctgagctaattagagaGagacttcattctaggtatca	10	7	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72242352	C	C	72242352	1	2	96	0	1	0	0	0	0	0	0	0	16945	957	33	4		4	TYW1B	7	72242352	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	967079	72242352	86896311	620	96296											
FKBP6	8468	broad.mit.edu	37	chr7	72441308	72441308	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacacttggacagacccttcGattctaattactttaggaaa	6	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72441308	T	T	72441308	1	4	96	0	1	0	0	0	0	0	0	0	5969	1073	37	3		3	FKBP6	7	72441308	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	198956	72441308	86697355	621	96297											
TRIM50	135892	broad.mit.edu	37	chr7	72727232	72727232	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggccgatcagccacacGccgtgctcgggggacctgtt	13	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72727232	A	A	72727232	2	1	96	1	0	0	0	0	0	0	0	1	16651	1074	38	4		4	TRIM50	7	72727232	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	285924	72727232	86411431	622	96298											
POMZP3	22932	broad.mit.edu	37	chr7	76247599	76247599	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgcagaagaggcatcagtGagaccgtcgacaagacagct	12	9	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76247599	A	A	76247599	2	1	96	1	0	0	0	0	0	0	0	1	12342	1277	45	4		4	POMZP3	7	76247599	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	3520367	76247599	82891064	623	96299											
MAGI2	9863	broad.mit.edu	37	chr7	77885848	77885848	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagtttgacaacatctgCatgagtgtgtccaaggacac	10	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77885848	G	G	77885848	3	3	96	1	0	0	0	0	1	0	0	0	9283	710	25	4	2960	4	MAGI2	7	77885848	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1638249	77885848	81252815	624	96300											
GNAT3	346562	broad.mit.edu	37	chr7	80108232	80108232	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctggatctctccacagcCgttttattacctcagccagt	6	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80108232	T	T	80108232	3	4	96	1	0	0	0	0	1	0	0	0	6577	652	23	4	696	4	GNAT3	7	80108232	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2222384	80108232	79030431	625	96301											
PCLO	27445	broad.mit.edu	37	chr7	82508557	82508557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataaggagagaggtttaccTacacagagaaggatgagaac	12	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82508557	A	A	82508557	1	1	96	0	1	0	0	0	0	0	0	0	11677	1537	53	5		5	PCLO	7	82508557	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	2400325	82508557	76630106	626	96302											
ABCB4	5244	broad.mit.edu	37	chr7	87049345	87049345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctttaaaagccattgacCgcagtcttctggtgaggatc	10	9	2	2	rs8187801	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87049345	A	A	87049345	3	1	96	1	0	0	0	0	1	0	0	0	43	652	23	1	1537	1	ABCB4	7	87049345	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4540788	87049345	72089318	627	96303											
GATAD1	57798	broad.mit.edu	37	chr7	92078044	92078044	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacttctttctctttttgttCtttaatttgtttgtgtaaca	4	6	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92078044	G	G	92078044	1	3	96	0	1	0	0	0	0	0	0	0	6321	928	32	4		4	GATAD1	7	92078044	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5028699	92078044	67060619	628	96304											
SAMD9	54809	broad.mit.edu	37	chr7	92734591	92734591	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttgttggacttgatggtCttcaaaatacttgtttatca	8	6	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92734591	T	T	92734591	3	4	96	1	0	0	0	0	1	0	0	0	13937	913	32	4	3953	4	SAMD9	7	92734591	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	656547	92734591	66404072	629	96305											
CCDC132	55610	broad.mit.edu	37	chr7	92926565	92926565	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattaccataggtaagaactCtaataagatatgaatcgact	6	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92926565	G	G	92926565	1	3	96	0	1	0	0	0	0	0	0	0	2793	928	32	4		4	CCDC132	7	92926565	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	191974	92926565	66212098	630	96306											
DLX5	1749	broad.mit.edu	37	chr7	96651649	96651650	+	Missense_Mutation	DNP	CC	AA	AA													tttctttggtttgccattcaCcattctcacctcgggctcgg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	96651650	AA	AA	96651649	3	1	96	1	0	0	0	0	1	0	0	0	4614	507	18	3	489	3	DLX5	7	96651649	Missense_Mutation	DNP	CC	TCGA-38-4625-01A-01D-1553-08	3725084	96651649	62487014	631	96307											
ASNS	440	broad.mit.edu	37	chr7	97498562	97498562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcattaaatcttgattcCggaaacgtgcataaaccact	6	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97498562	A	A	97498562	1	1	96	0	1	0	0	0	0	0	0	0	1052	667	23	1		1	ASNS	7	97498562	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	846913	97498562	61640101	632	96308											
STAG3	10734	broad.mit.edu	37	chr7	99802969	99802969	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacacagcagagaccagccCtcaggtcctccccagctcca	8	18	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99802969	T	T	99802969	3	4	96	1	0	0	0	0	1	0	0	0	15362	681	24	4	3310	4	STAG3	7	99802969	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2304407	99802969	59335694	633	96309											
SLC12A9	56996	broad.mit.edu	37	chr7	100460369	100460369	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcctggtggaccgtgcccAggtgaaggcttttgtggatc	15	10	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100460369	G	G	100460369	3	3	96	1	0	0	0	0	1	0	0	0	14503	188	7	5	1824	5	SLC12A9	7	100460369	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	657400	100460369	58678294	634	96310											
TRIP6	7205	broad.mit.edu	37	chr7	100465727	100465727	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctgccctggctccatcctCaggggctccctgcagacagg	11	17	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100465727	T	T	100465727	1	4	96	0	1	0	0	0	0	0	0	0	16684	841	29	4		4	TRIP6	7	100465727	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5358	100465727	58672936	635	96311											
MUC17	140453	broad.mit.edu	37	chr7	100696350	100696350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtgtacggcctcgtggGggcaggggtcgtgctgatgc	19	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100696350	T	T	100696350	3	4	96	1	0	0	0	0	1	0	0	0	10068	1232	43	2	13225	2	MUC17	7	100696350	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	230623	100696350	58442313	636	96312											
CUX1	1523	broad.mit.edu	37	chr7	101871019	101871019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagcaggtgaagggcgGgccctaggccaagccaacca	17	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101871019	T	T	101871019	1	4	96	0	1	0	0	0	0	0	0	0	4097	1247	43	2		2	CUX1	7	101871019	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1174669	101871019	57267644	637	96313											
NAPEPLD	222236	broad.mit.edu	37	chr7	102760290	102760290	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtccaactcaatcacattCtcacagccacatttttgcat	3	14	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102760290	G	G	102760290	3	3	96	1	0	0	0	0	1	0	0	0	10257	912	32	4	518	4	NAPEPLD	7	102760290	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	889271	102760290	56378373	638	96314											
PMPCB	9512	broad.mit.edu	37	chr7	102944535	102944535	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagggaatttatgaatgttGaaaataaacatttacaaatt	6	2	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102944535	C	C	102944535	1	2	96	0	1	0	0	0	0	0	0	0	12236	1305	45	4		4	PMPCB	7	102944535	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	184245	102944535	56194128	639	96315											
RELN	5649	broad.mit.edu	37	chr7	103215883	103215883	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattcctacaattcctagaCttaaagaggaataaattcag	6	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103215883	T	T	103215883	1	4	96	0	1	0	0	0	0	0	0	0	13328	580	20	4		4	RELN	7	103215883	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	271348	103215883	55922780	640	96316											
LHFPL3	375612	broad.mit.edu	37	chr7	104309481	104309481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagactgggacctccaccAcatctggcagaaatgcatga	9	13	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104309481	T	T	104309481	1	4	96	0	1	0	0	0	0	0	0	0	8838	174	6	5		5	LHFPL3	7	104309481	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1093598	104309481	54829182	641	96317											
PRKAR2B	5577	broad.mit.edu	37	chr7	106768848	106768848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtaagctgatcaccctGgggtgatggtaaaggccccc	12	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106768848	T	T	106768848	1	4	96	0	1	0	0	0	0	0	0	0	12612	1363	47	2		2	PRKAR2B	7	106768848	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2459367	106768848	52369815	642	96318											
LAMB1	3912	broad.mit.edu	37	chr7	107569637	107569637	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgcagtgactttaacatCtgttgcacttttgctgagta	8	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107569637	G	G	107569637	3	3	96	1	0	0	0	0	1	0	0	0	8682	913	32	4	617	4	LAMB1	7	107569637	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	800789	107569637	51569026	643	96319											
NRCAM	4897	broad.mit.edu	37	chr7	107872762	107872762	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatgttggttgacaagtttCcacttactggatgggcggac	12	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107872762	A	A	107872762	1	1	96	0	1	0	0	0	0	0	0	0	10739	870	30	3		3	NRCAM	7	107872762	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	303125	107872762	51265901	644	96320											
DOCK4	9732	broad.mit.edu	37	chr7	111398842	111398842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcacagcatatatctgCaaatctaggattcaagagtc	9	8	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111398842	A	A	111398842	3	1	96	1	0	0	0	0	1	0	0	0	4729	709	25	3	1812	3	DOCK4	7	111398842	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3526080	111398842	47739821	645	96321											
FOXP2	93986	broad.mit.edu	37	chr7	114268856	114268856	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacaacctattagcgtgctAgaacataaatgtaacatttt	7	7	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114268856	G	G	114268856	1	3	96	0	1	0	0	0	0	0	0	0	6087	435	15	5		5	FOXP2	7	114268856	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2870014	114268856	44869807	646	96322											
KCND2	3751	broad.mit.edu	37	chr7	119915472	119915472	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgttttgtgcgtagtgtcatGagtatcatcgacgtggtggc	14	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119915472	C	C	119915472	3	2	96	1	0	0	0	0	1	0	0	0	8089	1290	45	4	788	4	KCND2	7	119915472	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5646616	119915472	39223191	647	96323											
TSPAN12	23554	broad.mit.edu	37	chr7	120496858	120496858	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccccatcctttcaccacaTcctactcccaagggcaaaac	4	18	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120496858	G	G	120496858	1	3	96	0	1	0	0	0	0	0	0	0	16761	1450	50	5		5	TSPAN12	7	120496858	5'UTR	SNP	T	TCGA-38-4625-01A-01D-1553-08	581386	120496858	38641805	648	96324											
TAS2R16	50833	broad.mit.edu	37	chr7	122635158	122635158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaactgtatgagcctggaaCtgatactgatgaaaattttc	9	7	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122635158	A	A	122635158	3	1	96	1	0	0	0	0	1	0	0	0	15688	564	20	3	348	3	TAS2R16	7	122635158	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2138300	122635158	36503505	649	96325											
IQUB	154865	broad.mit.edu	37	chr7	123142545	123142545	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatatgacccatactcatGagcattctttctcaagcaaa	5	10	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123142545	T	T	123142545	1	4	96	0	1	0	0	0	0	0	0	0	7890	1305	45	3		3	IQUB	7	123142545	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	507387	123142545	35996118	650	96326											
RBM28	55131	broad.mit.edu	37	chr7	127950789	127950789	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagacacgggggatggggagGagcccaggagtgtcaccaga	19	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127950789	T	T	127950789	1	4	96	0	1	0	0	0	0	0	0	0	13236	1189	41	3		3	RBM28	7	127950789	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	4808244	127950789	31187874	651	96327											
CPA2	1358	broad.mit.edu	37	chr7	129908681	129908681	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgttgcattaatctgttaTacgcagagactaacaggtgc	9	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129908681	A	A	129908681	1	1	96	0	1	0	0	0	0	0	0	0	3822	1421	49	5		5	CPA2	7	129908681	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1957892	129908681	29229982	652	96328											
LRGUK	136332	broad.mit.edu	37	chr7	133932305	133932305	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctaatgacatttcttaccTaggaaagagattctatacac	5	8	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133932305	A	A	133932305	1	1	96	0	1	0	0	0	0	0	0	0	9030	1537	53	5		5	LRGUK	7	133932305	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	4023624	133932305	25206358	653	96329											
TRIM24	8805	broad.mit.edu	37	chr7	138268772	138268772	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggggagggaagggggcagGaaggaacagcagtgtgaaaa	20	3	0	1	rs140743487	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138268772	T	T	138268772	1	4	96	0	1	0	0	0	0	0	0	0	16622	1189	41	3		3	TRIM24	7	138268772	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4336467	138268772	20869891	654	96330											
ZC3HAV1L	92092	broad.mit.edu	37	chr7	138713709	138713709	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtagagcaaacagacctGgtacagaaatgagggaacac	12	7	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138713709	A	A	138713709	1	1	96	0	1	0	0	0	0	0	0	0	17702	1363	47	4		4	ZC3HAV1L	7	138713709	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	444937	138713709	20424954	655	96331											
BRAF	673	broad.mit.edu	37	chr7	140487388	140487388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtctctaatcaagtcctaCaaataaatagtaatgtatat	5	6	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140487388	A	A	140487388	1	1	96	0	1	0	0	0	0	0	0	0	1505	493	17	3		3	BRAF	7	140487388	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1773679	140487388	18651275	656	96332											
WEE2	494551	broad.mit.edu	37	chr7	141419104	141419104	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggagagttgtttcttgtCaaattattttaaattaaagc	7	3	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141419104	A	A	141419104	1	1	96	0	1	0	0	0	0	0	0	0	17472	841	29	3		3	WEE2	7	141419104	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	931716	141419104	17719559	657	96333											
PRSS37	136242	broad.mit.edu	37	chr7	141537763	141537763	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactttgggattgagcatGgcaggcttagccagcttgat	14	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141537763	T	T	141537763	2	4	96	1	0	0	0	0	0	0	0	1	12732	1335	47	2		2	PRSS37	7	141537763	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	118659	141537763	17600900	658	96334											
MGAM	8972	broad.mit.edu	37	chr7	141760103	141760103	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgctactgaacgtatttctCtccataggtctggcctgatt	8	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141760103	T	T	141760103	1	4	96	0	1	0	0	0	0	0	0	0	9634	928	32	4		4	MGAM	7	141760103	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	222340	141760103	17378560	659	96335											
EPHB6	2051	broad.mit.edu	37	chr7	142566519	142566519	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtccagcctgggtgaaggagGagggtccttgggtccaggaa	18	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142566519	A	A	142566519	1	1	96	0	1	0	0	0	0	0	0	0	5220	1189	41	4		4	EPHB6	7	142566519	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	806416	142566519	16572144	660	96336											
TRPV6	55503	broad.mit.edu	37	chr7	142572925	142572925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtaggcttcctaatggGggagaagaacagtcaaaatg	12	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142572925	T	T	142572925	1	4	96	0	1	0	0	0	0	0	0	0	16725	1247	43	2		2	TRPV6	7	142572925	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6406	142572925	16565738	661	96337											
TRPV5	56302	broad.mit.edu	37	chr7	142627249	142627249	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtcatagagggctgctaTgtgcagcgccgtctccccca	12	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142627249	C	C	142627249	3	2	96	1	0	0	0	0	1	0	0	0	16724	1464	51	5	1988	5	TRPV5	7	142627249	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	54324	142627249	16511414	662	96338											
OR2A25	392138	broad.mit.edu	37	chr7	143771977	143771977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttatgttcatattctatGtgccattctaaagatccagt	5	8	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143771977	T	T	143771977	3	4	96	1	0	0	0	0	1	0	0	0	11072	1377	48	3	667	3	OR2A25	7	143771977	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1144728	143771977	15366686	663	96339											
NOS3	4846	broad.mit.edu	37	chr7	150696413	150696413	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgagcactgagatcggcacGaggaacctgtgtgaccctca	12	11	1	3	rs144299379		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150696413	A	A	150696413	2	1	96	1	0	0	0	0	0	0	0	1	10639	1045	37	4		4	NOS3	7	150696413	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	6924436	150696413	8442250	664	96340											
PRKAG2	51422	broad.mit.edu	37	chr7	151262371	151262371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagataaaaacataaaaacaCattacatgaatgtttaaaat	3	4	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151262371	T	T	151262371	1	4	96	0	1	0	0	0	0	0	0	0	12607	493	17	4		4	PRKAG2	7	151262371	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	565958	151262371	7876292	665	96341											
DPP6	1804	broad.mit.edu	37	chr7	154598762	154598762	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgacctggttgagaacTgcacctacttcagcgcttcc	9	14	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154598762	A	A	154598762	3	1	96	1	0	0	0	0	1	0	0	0	4770	1580	55	5	1784	5	DPP6	7	154598762	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	3336391	154598762	4539901	666	96342											
ESYT2	57488	broad.mit.edu	37	chr7	158591576	158591576	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaatgcatttgttgtgActgaggtctttggggaccag	13	5	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158591576	T	T	158591576	1	4	96	0	1	0	0	0	0	0	0	0	5307	290	10	5		5	ESYT2	7	158591576	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3992814	158591576	547087	667	96343											
MYOM2	9172	broad.mit.edu	37	chr8	2057022	2057022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaggcaacaacaggccaGctcaagttttattttatatt	7	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2057022	T	T	2057022	1	4	96	0	1	0	0	0	0	0	0	0	10186	986	34	3		3	MYOM2	8	2057022	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08		2057022	144307000	668	96344											
CSMD1	64478	broad.mit.edu	37	chr8	3038656	3038656	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtattccaggtggaaaccagCagctgccacactaatgtcag	10	11	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3038656	G	G	3038656	3	3	96	1	0	0	0	0	1	0	0	0	3978	710	25	4	5129	4	CSMD1	8	3038656	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	981634	3038656	143325366	669	96345											
CSMD1	64478	broad.mit.edu	37	chr8	3216805	3216805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccacaccaaagtgaaaaCcaattcttcggctgaaggca	7	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3216805	A	A	3216805	3	1	96	1	0	0	0	0	1	0	0	0	3978	507	18	3	7721	3	CSMD1	8	3216805	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	178149	3216805	143147217	670	96346											
RP1L1	94137	broad.mit.edu	37	chr8	10473996	10473996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccagataaagtttcagcCtcgcttctcctggcattttt	7	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10473996	A	A	10473996	3	1	96	1	0	0	0	0	1	0	0	0	13644	680	24	2	6499	2	RP1L1	8	10473996	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	7257191	10473996	135890026	671	96347											
PINX1	54984	broad.mit.edu	37	chr8	10622935	10622935	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggaatctttcttcttcttCtttttcactagcgtttcttc	4	10	7	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10622935	A	A	10622935	3	1	96	1	0	0	0	0	1	0	0	0	12028	912	32	3	27	3	PINX1	8	10622935	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	148939	10622935	135741087	672	96348											
BLK	640	broad.mit.edu	37	chr8	11412873	11412873	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctatgccagaggctgaccCtgccctgtgtgcgcccggcc	13	16	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11412873	G	G	11412873	3	3	96	1	0	0	0	0	1	0	0	0	1450	680	24	4	678	4	BLK	8	11412873	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	789938	11412873	134951149	673	96349											
BMP1	649	broad.mit.edu	37	chr8	22051705	22051705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtactgaggaaggcggcGggcgggaggagtcagatagg	21	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22051705	T	T	22051705	1	4	96	0	1	0	0	0	0	0	0	0	1462	1131	39	1		1	BMP1	8	22051705	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	10638832	22051705	124312317	674	96350											
CDCA2	157313	broad.mit.edu	37	chr8	25327394	25327395	+	Intron	DEL	TT	-	-													attaataaaatgtaatactcTttcaatttttccccaagata							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25327395	-	-	25327394	6	5	96	0	1	1	0	1	0	0	0	0	3116	1624	56	0		0	CDCA2	8	25327394	Intron	DEL	TT	TCGA-38-4625-01A-01D-1553-08	3275689	25327394	121036628	675	96351											
C8orf80	389643	broad.mit.edu	37	chr8	27884611	27884611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgttaggatggtgcagccCaaggaaaagtggatcttata	12	6	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27884611	A	A	27884611	1	1	96	0	1	0	0	0	0	0	0	0	2465	609	21	2		2	C8orf80	8	27884611	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2557217	27884611	118479411	676	96352											
ZNF395	55893	broad.mit.edu	37	chr8	28214174	28214174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagaacccagctgggcCccgcttgctcaccagagaag	11	16	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28214174	A	A	28214174	1	1	96	0	1	0	0	0	0	0	0	0	18008	638	22	2		2	ZNF395	8	28214174	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	329563	28214174	118149848	677	96353											
TEX15	56154	broad.mit.edu	37	chr8	30701942	30701942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttaagcggattagaaactGtgttcttcaaagggactgac	11	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30701942	T	T	30701942	3	4	96	1	0	0	0	0	1	0	0	0	15901	1377	48	3	3793	3	TEX15	8	30701942	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2487768	30701942	115662080	678	96354											
UNC5D	137970	broad.mit.edu	37	chr8	35579917	35579917	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaacagtccgtcaaggtcAgcggcataggtccctccaca	9	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35579917	T	T	35579917	1	4	96	0	1	0	0	0	0	0	0	0	17121	203	7	5		5	UNC5D	8	35579917	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	4877975	35579917	110784105	679	96355											
FGFR1	2260	broad.mit.edu	37	chr8	38275300	38275300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtgggcagcaaaggcaCcagagaagctgttctgctgg	16	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38275300	A	A	38275300	1	1	96	0	1	0	0	0	0	0	0	0	5920	522	18	3		3	FGFR1	8	38275300	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2695383	38275300	108088722	680	96356											
ADAM2	2515	broad.mit.edu	37	chr8	39618664	39618664	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaatataaggtgataaataGaagttctaagacagatttct	7	4	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39618664	C	C	39618664	1	2	96	0	1	0	0	0	0	0	0	0	241	957	33	4		4	ADAM2	8	39618664	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1343364	39618664	106745358	681	96357											
ANK1	286	broad.mit.edu	37	chr8	41530361	41530361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattccagtactggtctgcaCgtagcggagaggaaagtgca	13	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41530361	A	A	41530361	3	1	96	1	0	0	0	0	1	0	0	0	620	536	19	3	1384	3	ANK1	8	41530361	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1911697	41530361	104833661	682	96358											
ANK1	286	broad.mit.edu	37	chr8	41550651	41550651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattggtggtgaagttggCgcactcgttggcatatacaa	13	7	0	1	rs139513895		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41550651	A	A	41550651	3	1	96	1	0	0	0	0	1	0	0	0	620	768	27	3	2422	3	ANK1	8	41550651	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	20290	41550651	104813371	683	96359											
EFCAB1	79645	broad.mit.edu	37	chr8	49641660	49641660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtctcttctctcacagCcagttcatagtctgcaaaag	7	11	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49641660	A	A	49641660	3	1	96	1	0	0	0	0	1	0	0	0	4973	739	26	3	126	3	EFCAB1	8	49641660	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	8091009	49641660	96722362	684	96360											
SNAI2	6591	broad.mit.edu	37	chr8	49833644	49833645	+	Intron	DNP	TG	AT	AT													ctgttaaaaaggaaaacagtTgaatctttggctcttttgta							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	49833645	AT	AT	49833644	1	1	96	0	1	0	0	0	0	0	0	0	14941	1827	63	5		5	SNAI2	8	49833644	Intron	DNP	TG	TCGA-38-4625-01A-01D-1553-08	191984	49833644	96530378	685	96361											
C8orf22	492307	broad.mit.edu	37	chr8	49987876	49987876	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccccttcagcgccccagCtattccaggactcttctcca	6	19	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49987876	A	A	49987876	1	1	96	0	1	0	0	0	0	0	0	0	2444	812	28	3		3	C8orf22	8	49987876	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	154232	49987876	96376146	686	96362											
SNTG1	54212	broad.mit.edu	37	chr8	51569657	51569657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaccaacttaacagcacCaaatagtataccatcaatat	3	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51569657	A	A	51569657	1	1	96	0	1	0	0	0	0	0	0	0	14988	609	21	2		2	SNTG1	8	51569657	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1581781	51569657	94794365	687	96363											
PXDNL	137902	broad.mit.edu	37	chr8	52258433	52258433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctccatatccttatcaacagGatagctgtattgagctgagc	8	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52258433	T	T	52258433	3	4	96	1	0	0	0	0	1	0	0	0	12956	1174	41	3	431	3	PXDNL	8	52258433	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	688776	52258433	94105589	688	96364											
PXDNL	137902	broad.mit.edu	37	chr8	52287312	52287312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaacagagacaggcagaCagcgcacacctgagactgaa	12	11	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52287312	A	A	52287312	1	1	96	0	1	0	0	0	0	0	0	0	12956	493	17	3		3	PXDNL	8	52287312	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	28879	52287312	94076710	689	96365											
ST18	9705	broad.mit.edu	37	chr8	53124719	53124719	+	Intron	DEL	C	-	-													cttaatcagttgataattttCaaaactgtataatggaaact							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53124719	-	-	53124719	6	5	96	0	1	1	0	1	0	0	0	0	15330	841	29	0		0	ST18	8	53124719	Intron	DEL	C	TCGA-38-4625-01A-01D-1553-08	837407	53124719	93239303	690	96366											
ST18	9705	broad.mit.edu	37	chr8	53126806	53126806	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcgttttatcttcagcCtctgcatccatctataacat	5	13	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53126806	T	T	53126806	2	4	96	1	0	0	0	0	0	0	0	1	15330	680	24	4		4	ST18	8	53126806	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	2087	53126806	93237216	691	96367											
RGS20	8601	broad.mit.edu	37	chr8	54866724	54866724	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggaaggaatgcattccgtGaattcctccgaacagaattc	9	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54866724	A	A	54866724	3	1	96	1	0	0	0	0	1	0	0	0	13412	1291	45	4	923	4	RGS20	8	54866724	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1739918	54866724	91497298	692	96368											
ASPH	444	broad.mit.edu	37	chr8	62550769	62550769	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattattttcttactgacttGaaaatgtcttgcattttttc	4	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62550769	C	C	62550769	1	2	96	0	1	0	0	0	0	0	0	0	1057	1305	45	4		4	ASPH	8	62550769	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	7684045	62550769	83813253	693	96369											
BHLHE22	27319	broad.mit.edu	37	chr8	65494499	65494499	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggagaagccttaaacacaCccccgaaaaacacaagaccg	7	14	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65494499	T	T	65494499	1	4	96	0	1	0	0	0	0	0	0	0	1427	522	18	4		4	BHLHE22	8	65494499	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	2943730	65494499	80869523	694	96370											
PREX2	80243	broad.mit.edu	37	chr8	68950644	68950644	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttctctctgtgcttcccAgagcccatcatccatcagtg	6	16	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68950644	G	G	68950644	1	3	96	0	1	0	0	0	0	0	0	0	12583	203	7	5		5	PREX2	8	68950644	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3456145	68950644	77413378	695	96371											
PREX2	80243	broad.mit.edu	37	chr8	68967939	68967939	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccagggcactattatacaGagatctgtatccacaacccc	6	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68967939	A	A	68967939	1	1	96	0	1	0	0	0	0	0	0	0	12583	957	33	4		4	PREX2	8	68967939	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	17295	68967939	77396083	696	96372											
C8orf34	116328	broad.mit.edu	37	chr8	69445253	69445253	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagaacaaaggattaaaacAgcagcaacagcaacataaga	7	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69445253	T	T	69445253	3	4	96	1	0	0	0	0	1	0	0	0	2448	188	7	5	663	5	C8orf34	8	69445253	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	477314	69445253	76918769	697	96373											
PRDM14	63978	broad.mit.edu	37	chr8	70980285	70980285	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaattcatgcagaggtgcTatcctcatggagcaaacact	9	10	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70980285	C	C	70980285	1	2	96	0	1	0	0	0	0	0	0	0	12561	1537	53	5		5	PRDM14	8	70980285	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1535032	70980285	75383737	698	96374											
LACTB2	51110	broad.mit.edu	37	chr8	71553380	71553380	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttaaaaataattcatatGatatattgaaaaagcatact	3	3	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71553380	A	A	71553380	1	1	96	0	1	0	0	0	0	0	0	0	8670	1305	45	4		4	LACTB2	8	71553380	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	573095	71553380	74810642	699	96375											
CNGB3	54714	broad.mit.edu	37	chr8	87660175	87660175	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcctttctgggaatggatgGatttacgctgatgtctgtaa	12	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87660175	T	T	87660175	1	4	96	0	1	0	0	0	0	0	0	0	3633	1189	41	3		3	CNGB3	8	87660175	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	16106795	87660175	58703847	700	96376											
MMP16	4325	broad.mit.edu	37	chr8	89209476	89209476	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgcatggtctctgcagaGcgcagcactgacattctggg	13	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89209476	A	A	89209476	2	1	96	1	0	0	0	0	0	0	0	1	9748	958	34	4		4	MMP16	8	89209476	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1549301	89209476	57154546	701	96377											
SLC26A7	115111	broad.mit.edu	37	chr8	92374424	92374424	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagcaggatttgtttctgtAtttctgagcttctgtttacc	10	7	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92374424	T	T	92374424	1	4	96	0	1	0	0	0	0	0	0	0	14636	464	16	5		5	SLC26A7	8	92374424	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3164948	92374424	53989598	702	96378											
PGCP	10404	broad.mit.edu	37	chr8	98041615	98041615	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagtatcacttttttatTttattattttcccagggctg	5	7	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98041615	G	G	98041615	1	3	96	0	1	0	0	0	0	0	0	0	11881	1856	64	5		5	PGCP	8	98041615	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	5667191	98041615	48322407	703	96379											
TSPYL5	85453	broad.mit.edu	37	chr8	98288650	98288650	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacactaacgtagaaaagCaagaggctatgggaggcaaa	13	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98288650	A	A	98288650	1	1	96	0	1	0	0	0	0	0	0	0	16787	725	25	3		3	TSPYL5	8	98288650	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	247035	98288650	48075372	704	96380											
CTHRC1	115908	broad.mit.edu	37	chr8	104388028	104388028	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagacgggagccctggggcCaatggcattccgggtacacc	15	13	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104388028	T	T	104388028	2	4	96	1	0	0	0	0	0	0	0	1	4044	581	21	4		4	CTHRC1	8	104388028	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	6099378	104388028	41975994	705	96381											
ZFPM2	23414	broad.mit.edu	37	chr8	106815565	106815565	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctctgagaacccattagcTgccaatgagaatgtctcacc	7	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106815565	A	A	106815565	2	1	96	1	0	0	0	0	0	0	0	1	17784	1567	55	5		5	ZFPM2	8	106815565	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	2427537	106815565	39548457	706	96382											
ANGPT1	284	broad.mit.edu	37	chr8	108315709	108315709	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccacacaaatgtcaatatCgcacatagtaaaaagtcaat	4	10	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108315709	A	A	108315709	1	1	96	0	1	0	0	0	0	0	0	0	610	899	31	3		3	ANGPT1	8	108315709	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1500144	108315709	38048313	707	96383											
CSMD3	114788	broad.mit.edu	37	chr8	113267697	113267697	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttatatcaaagatttagtAtacagcagagtacacagttt	7	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113267697	G	G	113267697	1	3	96	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113267697	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	4951988	113267697	33096325	708	96384											
CSMD3	114788	broad.mit.edu	37	chr8	113349007	113349007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatattcatcaggatacCcaggagaataaatggtgcca	10	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113349007	A	A	113349007	3	1	96	1	0	0	0	0	1	0	0	0	3980	623	22	2	4342	2	CSMD3	8	113349007	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	81310	113349007	33015015	709	96385											
CSMD3	114788	broad.mit.edu	37	chr8	113563126	113563126	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggagaaccatatttctctGattattttaaacaaggattc	7	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113563126	T	T	113563126	1	4	96	0	1	0	0	0	0	0	0	0	3980	1305	45	3		3	CSMD3	8	113563126	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	214119	113563126	32800896	710	96386											
CSMD3	114788	broad.mit.edu	37	chr8	113871477	113871477	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccacttggtccttgaagaTtagagccacacgttttcact	7	11	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113871477	G	G	113871477	3	3	96	1	0	0	0	0	1	0	0	0	3980	1493	52	5	9715	5	CSMD3	8	113871477	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	308351	113871477	32492545	711	96387											
TRPS1	7227	broad.mit.edu	37	chr8	116631304	116631304	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaacatgaatataagaattCacatttcatttctaataact	2	6	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116631304	A	A	116631304	1	1	96	0	1	0	0	0	0	0	0	0	16718	841	29	3		3	TRPS1	8	116631304	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2759827	116631304	29732718	712	96388											
TRPS1	7227	broad.mit.edu	37	chr8	116632061	116632061	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcactcagaactgcgcttttCaagtccttcttactgctaga	6	12	4	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116632061	A	A	116632061	3	1	96	1	0	0	0	0	1	0	0	0	16718	825	29	3	3640	3	TRPS1	8	116632061	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	757	116632061	29731961	713	96389											
ENPP2	5168	broad.mit.edu	37	chr8	120608213	120608213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcttaggtctcttagcCggagtaaaaggtgagccata	10	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120608213	A	A	120608213	1	1	96	0	1	0	0	0	0	0	0	0	5172	639	23	1		1	ENPP2	8	120608213	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3976152	120608213	25755809	714	96390											
ENPP2	5168	broad.mit.edu	37	chr8	120638941	120638941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagatccggagatgttggtCcagggggagtctgatagcac	15	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120638941	A	A	120638941	3	1	96	1	0	0	0	0	1	0	0	0	5172	856	30	3	2766	3	ENPP2	8	120638941	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	30728	120638941	25725081	715	96391											
COL14A1	7373	broad.mit.edu	37	chr8	121210169	121210169	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaggaaatacactaacaGgtatgttttgttcaatccat	8	6	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121210169	A	A	121210169	3	1	96	1	0	0	0	0	1	0	0	0	3703	1014	35	4	734	4	COL14A1	8	121210169	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	571228	121210169	25153853	716	96392											
SNTB1	6641	broad.mit.edu	37	chr8	121587221	121587221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttaaggagctctcagcCcctgctgcaatagtgagcag	10	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121587221	A	A	121587221	1	1	96	0	1	0	0	0	0	0	0	0	14986	638	22	2		2	SNTB1	8	121587221	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	377052	121587221	24776801	717	96393											
HAS2	3037	broad.mit.edu	37	chr8	122641153	122641153	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttccagatataagtggctGatttgtctctgcccatgact	8	10	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122641153	T	T	122641153	4	4	96	1	0	0	0	0	0	1	0	0	7028	1294	45	3	1242	3	HAS2	8	122641153	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1053932	122641153	23722869	718	96394											
WDR67	93594	broad.mit.edu	37	chr8	124138434	124138434	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatataacctcccaggtaaGaagcataaggtttttagaat	8	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124138434	C	C	124138434	1	2	96	0	1	0	0	0	0	0	0	0	17445	957	33	4		4	WDR67	8	124138434	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1497281	124138434	22225588	719	96395											
LRRC6	23639	broad.mit.edu	37	chr8	133650261	133650261	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttccccatgagaaagagctCcttcagatggatattgtgct	10	9	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133650261	A	A	133650261	4	1	96	1	0	0	0	0	0	1	0	0	9103	864	30	3	1087	3	LRRC6	8	133650261	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	9511827	133650261	12713761	720	96396											
TG	7038	broad.mit.edu	37	chr8	133947998	133947998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagcatctttccatctcCagaaacgagatgcactgggg	10	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133947998	A	A	133947998	1	1	96	0	1	0	0	0	0	0	0	0	15936	609	21	2		2	TG	8	133947998	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	297737	133947998	12416024	721	96397											
FAM135B	51059	broad.mit.edu	37	chr8	139160791	139160791	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggacacagacaaccagGtgaattccatcttccaaatt	6	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139160791	A	A	139160791	2	1	96	1	0	0	0	0	0	0	0	1	5495	1252	44	4		4	FAM135B	8	139160791	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	5212793	139160791	7203231	722	96398											
TRAPPC9	83696	broad.mit.edu	37	chr8	141294041	141294041	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacgcgggaatgacttccacTgtggagccactggtttttat	11	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141294041	A	A	141294041	2	1	96	1	0	0	0	0	0	0	0	1	16589	1567	55	5		5	TRAPPC9	8	141294041	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	2133250	141294041	5069981	723	96399											
LYNX1	66004	broad.mit.edu	37	chr8	143856771	143856771	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactgaccttcatcctggtGggggtgtagtctgcagaggg	15	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143856771	A	A	143856771	2	1	96	1	0	0	0	0	0	0	0	1	9196	1335	47	4		4	LYNX1	8	143856771	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	2562730	143856771	2507251	724	96400											
CYP11B1	1584	broad.mit.edu	37	chr8	143960508	143960508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccacccagggctccaggCtcatcctgtggggatgcagg	15	13	1	0	rs61751139		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143960508	A	A	143960508	3	1	96	1	0	0	0	0	1	0	0	0	4178	797	28	3	1208	3	CYP11B1	8	143960508	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	103737	143960508	2403514	725	96401											
CYP11B1	1584	broad.mit.edu	37	chr8	143960555	143960555	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgttgcagcttctccacGtcctccggcagcatcacaca	7	17	2	0	rs5284		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143960555	A	A	143960555	2	1	96	1	0	0	0	0	0	0	0	1	4178	1136	40	4		4	CYP11B1	8	143960555	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	47	143960555	2403467	726	96402											
ZFP41	286128	broad.mit.edu	37	chr8	144332657	144332657	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcggtgcgagcctcgccgGacacctgctccgtggctccc	13	18	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144332657	C	C	144332657	1	2	96	0	1	0	0	0	0	0	0	0	17775	1189	41	4		4	ZFP41	8	144332657	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	372102	144332657	2031365	727	96403											
MAPK15	225689	broad.mit.edu	37	chr8	144803920	144803920	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgacatggcccttcccAggtgaagccaagcgggaggg	15	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144803920	T	T	144803920	5	4	96	1	0	0	0	0	0	0	1	0	9369	202	7	5	1378	5	MAPK15	8	144803920	Splice_Site	SNP	A	TCGA-38-4625-01A-01D-1553-08	471263	144803920	1560102	728	96404											
SCRIB	23513	broad.mit.edu	37	chr8	144874009	144874009	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaccccacccccatgcctCgggggtgaagggaaggcata	13	14	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144874009	T	T	144874009	1	4	96	0	1	0	0	0	0	0	0	0	14050	899	31	4		4	SCRIB	8	144874009	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	70089	144874009	1490013	729	96405											
SPATC1	375686	broad.mit.edu	37	chr8	145095304	145095304	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcggctggctgagccactcCgcggaggccccactgggccc	15	17	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145095304	T	T	145095304	3	4	96	1	0	0	0	0	1	0	0	0	15133	652	23	4	712	4	SPATC1	8	145095304	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	221295	145095304	1268718	730	96406											
DOCK8	81704	broad.mit.edu	37	chr9	286497	286497	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtggagccagtggactttGaaggacttctgatgacacac	12	9	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	286497	C	C	286497	3	2	96	1	0	0	0	0	1	0	0	0	4733	1291	45	4	203	4	DOCK8	9	286497	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08		286497	140926934	731	96407											
DOCK8	81704	broad.mit.edu	37	chr9	340166	340166	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctctctttaggcttgctAagactggagatttctacagc	8	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	340166	G	G	340166	2	3	96	1	0	0	0	0	0	0	0	1	4733	349	13	5		5	DOCK8	9	340166	Silent	SNP	A	TCGA-38-4625-01A-01D-1553-08	53669	340166	140873265	732	96408											
UHRF2	115426	broad.mit.edu	37	chr9	6486881	6486881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatggtcgaagtaatgatGgggcttattctcttgtactg	11	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6486881	T	T	6486881	3	4	96	1	0	0	0	0	1	0	0	0	17096	1348	47	2	1487	2	UHRF2	9	6486881	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	6146715	6486881	134726550	733	96409											
GLDC	2731	broad.mit.edu	37	chr9	6554779	6554779	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccagggcgacagattccCacctaccacaaaggcaaggg	10	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6554779	A	A	6554779	2	1	96	1	0	0	0	0	0	0	0	1	6497	581	21	2		2	GLDC	9	6554779	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	67898	6554779	134658652	734	96410											
C9orf123	90871	broad.mit.edu	37	chr9	7799433	7799433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccccgcagatacccaaccCgcccaagtgctgtgccttga	8	17	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7799433	A	A	7799433	1	1	96	0	1	0	0	0	0	0	0	0	2479	667	23	1		1	C9orf123	9	7799433	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1244654	7799433	133413998	735	96411											
PTPRD	5789	broad.mit.edu	37	chr9	8341037	8341037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattctggttattaaactaGggcacatgtaaatatcaagg	8	5	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8341037	T	T	8341037	1	4	96	0	1	0	0	0	0	0	0	0	12907	1015	35	2		2	PTPRD	9	8341037	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	541604	8341037	132872394	736	96412											
PTPRD	5789	broad.mit.edu	37	chr9	8465465	8465465	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccatcataattaacttaCagactctgcatgttccatta	4	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8465465	A	A	8465465	5	1	96	1	0	0	0	0	0	0	1	0	12907	492	17	3	2148	3	PTPRD	9	8465465	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	124428	8465465	132747966	737	96413											
PTPRD	5789	broad.mit.edu	37	chr9	8486068	8486068	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagggaatccagttggtaCttcttctggaatggaaatct	11	6	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8486068	T	T	8486068	3	4	96	1	0	0	0	0	1	0	0	0	12907	565	20	4	3133	4	PTPRD	9	8486068	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	20603	8486068	132727363	738	96414											
BNC2	54796	broad.mit.edu	37	chr9	16775671	16775671	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcctggtctgctggtccAcgctttggtcttctaggatt	11	12	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16775671	G	G	16775671	1	3	96	0	1	0	0	0	0	0	0	0	1481	174	6	5		5	BNC2	9	16775671	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	8289603	16775671	124437760	739	96415											
CNTLN	54875	broad.mit.edu	37	chr9	17135167	17135167	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgaagtacacgcaatgcGcagcgaggcctcgggttttg	14	10	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17135167	C	C	17135167	3	2	96	1	0	0	0	0	1	0	0	0	3671	1087	38	4	106	4	CNTLN	9	17135167	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	359496	17135167	124078264	740	96416											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18681848	18681848	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggcctcagataccgtgtGgtcctctgcatcgaccatcg	11	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18681848	C	C	18681848	2	2	96	1	0	0	0	0	0	0	0	1	274	1335	47	4		4	ADAMTSL1	9	18681848	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1546681	18681848	122531583	741	96417											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18718326	18718327	+	Intron	DNP	CC	AA	AA													tttctcatgtacaaatccctCcttgctatacattgttccgt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18718327	AA	AA	18718326	1	1	96	0	1	0	0	0	0	0	0	0	274	870	30	3		3	ADAMTSL1	9	18718326	Intron	DNP	CC	TCGA-38-4625-01A-01D-1553-08	36478	18718326	122495105	742	96418											
KIAA1797	54914	broad.mit.edu	37	chr9	20944668	20944668	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacttgttctgtccctcatGagccacagcagccaaatgca	9	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20944668	C	C	20944668	3	2	96	1	0	0	0	0	1	0	0	0	8328	1290	45	4	3560	4	KIAA1797	9	20944668	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2226342	20944668	120268763	743	96419											
IFNA21	3452	broad.mit.edu	37	chr9	21166379	21166379	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatcatctcatggaggacaGagatggcttgagccttctgg	14	8	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21166379	A	A	21166379	3	1	96	1	0	0	0	0	1	0	0	0	7608	942	33	4	340	4	IFNA21	9	21166379	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	221711	21166379	120047052	744	96420											
IFNA14	3448	broad.mit.edu	37	chr9	21209227	21209227	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttacttctcagtccttgcAagtctgttgatgaagagaag	9	9	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21209227	G	G	21209227	1	3	96	0	1	0	0	0	0	0	0	0	7604	145	5	5		5	IFNA14	9	21209227	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	42848	21209227	120004204	745	96421											
CDKN2A	1029	broad.mit.edu	37	chr9	21971107	21971107	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagccctcccgggcagcgTcgtgcacgggtcgggtgaga	18	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21971107	A	A	21971107	3	1	96	1	0	0	0	0	1	0	0	0	3191	1667	58	5	227	5	CDKN2A	9	21971107	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	761880	21971107	119242324	746	96422											
ELAVL2	1993	broad.mit.edu	37	chr9	23692846	23692846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggatattaattccagcCaaactggtcattccgtcaat	7	11	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23692846	A	A	23692846	3	1	96	1	0	0	0	0	1	0	0	0	5092	593	21	2	294	2	ELAVL2	9	23692846	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1721739	23692846	117520585	747	96423											
ELAVL2	1993	broad.mit.edu	37	chr9	23764886	23764886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatggccataccacaataGgttaaatgtaagaataatta	7	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23764886	T	T	23764886	1	4	96	0	1	0	0	0	0	0	0	0	5092	1015	35	2		2	ELAVL2	9	23764886	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	72040	23764886	117448545	748	96424											
C9orf72	203228	broad.mit.edu	37	chr9	27561471	27561471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcaaatacgtaatgtccCtagaacaatctaagtagaca	6	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27561471	A	A	27561471	1	1	96	0	1	0	0	0	0	0	0	0	2521	696	24	2		2	C9orf72	9	27561471	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3796585	27561471	113651960	749	96425											
NFX1	4799	broad.mit.edu	37	chr9	33370040	33370040	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagacttatttgccagcagAtaaatcatgcccgttcccct	8	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33370040	T	T	33370040	1	4	96	0	1	0	0	0	0	0	0	0	10482	348	12	5		5	NFX1	9	33370040	3'UTR	SNP	A	TCGA-38-4625-01A-01D-1553-08	5808569	33370040	107843391	750	96426											
PRSS3	5646	broad.mit.edu	37	chr9	33797891	33797891	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggaatgagcagttcatcAatgcggccaagatcatccgc	12	10	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33797891	C	C	33797891	3	2	96	1	0	0	0	0	1	0	0	0	12728	130	5	5	490	5	PRSS3	9	33797891	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	427851	33797891	107415540	751	96427											
ARID3C	138715	broad.mit.edu	37	chr9	34623960	34623960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgatgacttccaccaggCcgcccttggcggtcaccagg	13	14	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34623960	A	A	34623960	3	1	96	1	0	0	0	0	1	0	0	0	920	739	26	3	781	3	ARID3C	9	34623960	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	826069	34623960	106589471	752	96428											
VCP	7415	broad.mit.edu	37	chr9	35061054	35061054	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctagagagttcatgacctcGgcatcaatggtctcatcctc	9	12	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35061054	A	A	35061054	2	1	96	1	0	0	0	0	0	0	0	1	17267	1103	39	4		4	VCP	9	35061054	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	437094	35061054	106152377	753	96429											
CA9	768	broad.mit.edu	37	chr9	35676228	35676228	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcggagctggccgagaagGggcaaaggagcggggcggag	23	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35676228	A	A	35676228	1	1	96	0	1	0	0	0	0	0	0	0	2550	1247	43	4		4	CA9	9	35676228	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	615174	35676228	105537203	754	96430											
SHB	6461	broad.mit.edu	37	chr9	37974575	37974575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaaggtgagtgctgagCgcagctcagcagctgcctcc	14	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37974575	A	A	37974575	1	1	96	0	1	0	0	0	0	0	0	0	14381	783	27	3		3	SHB	9	37974575	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2298347	37974575	103238856	755	96431											
FAM75A6	389730	broad.mit.edu	37	chr9	43627280	43627280	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcggtgggacaggggctgGgcctggaaaagcagtgggga	22	6	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43627280	T	T	43627280	2	4	96	1	0	0	0	0	0	0	0	1	5674	1219	43	2		2	FAM75A6	9	43627280	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	5652705	43627280	97586151	756	96432											
FAM75A6	389730	broad.mit.edu	37	chr9	43627756	43627756	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggctaccagcttccatctGacaggtctctggtgggtggc	13	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43627756	C	C	43627756	3	2	96	1	0	0	0	0	1	0	0	0	5674	1299	45	4	3104	4	FAM75A6	9	43627756	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	476	43627756	97585675	757	96433											
PIP5K1B	8395	broad.mit.edu	37	chr9	71532569	71532569	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaccccacaaaatgtgcctGatgctaagcggactgggatg	12	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71532569	T	T	71532569	3	4	96	1	0	0	0	0	1	0	0	0	12035	1290	45	3	899	3	PIP5K1B	9	71532569	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	27904813	71532569	69680862	758	96434											
GDA	9615	broad.mit.edu	37	chr9	74863115	74863115	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagtatctttaaaaaaaatCtctcccaatggcaaggaaga	7	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74863115	T	T	74863115	1	4	96	0	1	0	0	0	0	0	0	0	6369	928	32	4		4	GDA	9	74863115	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3330546	74863115	66350316	759	96435											
ZCCHC6	79670	broad.mit.edu	37	chr9	88957850	88957850	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtattaaaaaaaaaagctCtgaaactgaaggcaagcgga	10	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88957850	A	A	88957850	1	1	96	0	1	0	0	0	0	0	0	0	17718	928	32	3		3	ZCCHC6	9	88957850	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	14094735	88957850	52255581	760	96436											
SHC3	53358	broad.mit.edu	37	chr9	91653014	91653014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttcctgaccaggaagtctCcgtctttctccagcagcccc	7	17	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91653014	A	A	91653014	3	1	96	1	0	0	0	0	1	0	0	0	14385	855	30	3	242	3	SHC3	9	91653014	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2695164	91653014	49560417	761	96437											
ROR2	4920	broad.mit.edu	37	chr9	94486620	94486620	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgagggcatacacccagGcgggacagtcatcggggcaa	14	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94486620	A	A	94486620	3	1	96	1	0	0	0	0	1	0	0	0	13638	1203	42	4	679	4	ROR2	9	94486620	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2833606	94486620	46726811	762	96438											
ECM2	1842	broad.mit.edu	37	chr9	95285068	95285068	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagatcttcctcctttgcttCctaggaatttcttcattttt	4	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95285068	T	T	95285068	2	4	96	1	0	0	0	0	0	0	0	1	4938	854	30	4		4	ECM2	9	95285068	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	798448	95285068	45928363	763	96439											
C9orf3	84909	broad.mit.edu	37	chr9	97718385	97718385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgccagtattaaagagtaGggaaaaggtttcccatttaa	9	5	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97718385	T	T	97718385	1	4	96	0	1	0	0	0	0	0	0	0	2503	1015	35	2		2	C9orf3	9	97718385	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2433317	97718385	43495046	764	96440											
ZNF322B	387328	broad.mit.edu	37	chr9	99961594	99961594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatttataaggtttctccCcagtatgggttctctcacac	6	12	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99961594	A	A	99961594	3	1	96	1	0	0	0	0	1	0	0	0	17968	623	22	2	1012	2	ZNF322B	9	99961594	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2243209	99961594	41251837	765	96441											
TMOD1	7111	broad.mit.edu	37	chr9	100324934	100324934	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catttctgtgagccagagttCccggggtttggagtgtgggt	16	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100324934	T	T	100324934	1	4	96	0	1	0	0	0	0	0	0	0	16356	870	30	4		4	TMOD1	9	100324934	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	363340	100324934	40888497	766	96442											
COL15A1	1306	broad.mit.edu	37	chr9	101817685	101817685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccctccaagtcatctaccCcaaagacttacagctttccc	3	18	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101817685	T	T	101817685	1	4	96	0	1	0	0	0	0	0	0	0	3704	638	22	4		4	COL15A1	9	101817685	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1492751	101817685	39395746	767	96443											
NR4A3	8013	broad.mit.edu	37	chr9	102594880	102594880	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aattatacgaattgcactgtCgcttttcacattgtaattaa	5	7	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102594880	G	G	102594880	1	3	96	0	1	0	0	0	0	0	0	0	10729	899	31	4		4	NR4A3	9	102594880	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	777195	102594880	38618551	768	96444											
TMEFF1	8577	broad.mit.edu	37	chr9	103338820	103338820	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgccccaaaaacaatagaGgacgtcgacagaagcaaaac	8	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103338820	T	T	103338820	4	4	96	1	0	0	0	0	0	1	0	0	16136	1001	35	2	1119	2	TMEFF1	9	103338820	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	743940	103338820	37874611	769	96445											
IKBKAP	8518	broad.mit.edu	37	chr9	111656056	111656056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattaaaagtgattaccttcAgcttttcagaacacaggaca	6	9	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111656056	G	G	111656056	1	3	96	0	1	0	0	0	0	0	0	0	7680	203	7	5		5	IKBKAP	9	111656056	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	8317236	111656056	29557375	770	96446											
EPB41L4B	54566	broad.mit.edu	37	chr9	111956428	111956428	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttaaatacatgcaccagaTgctactcagtaaattgatac	5	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111956428	C	C	111956428	1	2	96	0	1	0	0	0	0	0	0	0	5198	1479	51	5		5	EPB41L4B	9	111956428	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	300372	111956428	29257003	771	96447											
ALAD	210	broad.mit.edu	37	chr9	116153921	116153921	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacctgtgtgggtgtgggtaGaggggttgaaggaaggcagg	21	3	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116153921	C	C	116153921	1	2	96	0	1	0	0	0	0	0	0	0	483	957	33	4		4	ALAD	9	116153921	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4197493	116153921	25059510	772	96448											
C9orf43	257169	broad.mit.edu	37	chr9	116190611	116190611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattgctaatgattctgtgGgttgactggacagttgttct	11	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116190611	T	T	116190611	1	4	96	0	1	0	0	0	0	0	0	0	2509	1247	43	2		2	C9orf43	9	116190611	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	36690	116190611	25022820	773	96449											
COL27A1	85301	broad.mit.edu	37	chr9	116968563	116968563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accggtaggagatcccggccCcaaaggcagcagggtaagtg	15	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116968563	T	T	116968563	3	4	96	1	0	0	0	0	1	0	0	0	3717	623	22	4	2293	4	COL27A1	9	116968563	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	777952	116968563	24244868	774	96450											
COL27A1	85301	broad.mit.edu	37	chr9	117020842	117020842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccaggatctcgaggcCcaccaggcatgaggggagca	14	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117020842	A	A	117020842	3	1	96	1	0	0	0	0	1	0	0	0	3717	623	22	2	3273	2	COL27A1	9	117020842	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	52279	117020842	24192589	775	96451											
DFNB31	25861	broad.mit.edu	37	chr9	117185751	117185751	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaccaggtggtcgaagCgttctaggtcttgcggggaa	15	9	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117185751	T	T	117185751	3	4	96	1	0	0	0	0	1	0	0	0	4495	768	27	4	1278	4	DFNB31	9	117185751	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	164909	117185751	24027680	776	96452											
TNC	3371	broad.mit.edu	37	chr9	117810677	117810677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagtgtgaattcctgggGgtccagcagcttcccagaat	12	9	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117810677	T	T	117810677	3	4	96	1	0	0	0	0	1	0	0	0	16393	1232	43	2	1943	2	TNC	9	117810677	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	624926	117810677	23402754	777	96453											
TNC	3371	broad.mit.edu	37	chr9	117827204	117827204	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcaggggcttgttctgaaTaatgacagagatggggtcag	15	6	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117827204	G	G	117827204	1	3	96	0	1	0	0	0	0	0	0	0	16393	1421	49	5		5	TNC	9	117827204	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	16527	117827204	23386227	778	96454											
ASTN2	23245	broad.mit.edu	37	chr9	119903520	119903520	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgagcacagggaagcaagGgaagaatgcacagatctccc	12	9	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119903520	A	A	119903520	1	1	96	0	1	0	0	0	0	0	0	0	1069	1247	43	4		4	ASTN2	9	119903520	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2076316	119903520	21309911	779	96455											
ASTN2	23245	broad.mit.edu	37	chr9	119976664	119976664	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcaaagtccaccttctcttCccctggatgtcccagactgt	6	16	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119976664	A	A	119976664	4	1	96	1	0	0	0	0	0	1	0	0	1069	864	30	3	3190	3	ASTN2	9	119976664	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	73144	119976664	21236767	780	96456											
DBC1	1620	broad.mit.edu	37	chr9	121929324	121929324	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttgttctgttgtgtgtgTacaacaacaggaaaagtcca	9	6	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121929324	A	A	121929324	1	1	96	0	1	0	0	0	0	0	0	0	4280	1653	57	5		5	DBC1	9	121929324	3'UTR	SNP	T	TCGA-38-4625-01A-01D-1553-08	1952660	121929324	19284107	781	96457											
DBC1	1620	broad.mit.edu	37	chr9	121929679	121929679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggctatacccaaacaCctgcacgtctgagatcttga	7	14	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121929679	A	A	121929679	3	1	96	1	0	0	0	0	1	0	0	0	4280	507	18	3	320	3	DBC1	9	121929679	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	355	121929679	19283752	782	96458											
TTLL11	158135	broad.mit.edu	37	chr9	124751595	124751595	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtcagaccagaccttcTtgatgtcaacgcctttggaa	9	10	3	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124751595	C	C	124751595	3	2	96	1	0	0	0	0	1	0	0	0	16850	1609	56	5	1086	5	TTLL11	9	124751595	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	2821916	124751595	16461836	783	96459											
OR1J4	26219	broad.mit.edu	37	chr9	125281954	125281954	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaccatcccccatttcttcTgtgatcttgttgccctactc	4	16	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125281954	A	A	125281954	3	1	96	1	0	0	0	0	1	0	0	0	11055	1580	55	5	537	5	OR1J4	9	125281954	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	530359	125281954	15931477	784	96460											
DNM1	1759	broad.mit.edu	37	chr9	130985090	130985090	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatggagtttgatgagaagGaactccgaagggagatcagc	15	5	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130985090	T	T	130985090	4	4	96	1	0	0	0	0	0	1	0	0	4710	1175	41	3	1181	3	DNM1	9	130985090	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5703136	130985090	10228341	785	96461											
SLC27A4	10999	broad.mit.edu	37	chr9	131114893	131114893	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcttcatctcgctgaccctCaggggccatccctctgcctc	8	18	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131114893	A	A	131114893	1	1	96	0	1	0	0	0	0	0	0	0	14642	841	29	3		3	SLC27A4	9	131114893	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	129803	131114893	10098538	786	96462											
FIBCD1	84929	broad.mit.edu	37	chr9	133780732	133780732	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcataggccgtgccattctCaaagtcctccaggtccacgt	10	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133780732	T	T	133780732	3	4	96	1	0	0	0	0	1	0	0	0	5941	835	29	4	378	4	FIBCD1	9	133780732	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2665839	133780732	7432699	787	96463											
BAT2L1	84726	broad.mit.edu	37	chr9	134319603	134319603	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaagccgactgttatccttCtctcccgaggaatttccgac	7	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134319603	G	G	134319603	3	3	96	1	0	0	0	0	1	0	0	0	1325	912	32	4	519	4	BAT2L1	9	134319603	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	538871	134319603	6893828	788	96464											
BAT2L1	84726	broad.mit.edu	37	chr9	134360104	134360104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagtatccccatcctgcGgcgggaccatcacatccaga	9	15	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134360104	T	T	134360104	3	4	96	1	0	0	0	0	1	0	0	0	1325	1116	39	1	5582	1	BAT2L1	9	134360104	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	40501	134360104	6853327	789	96465											
SETX	23064	broad.mit.edu	37	chr9	135158816	135158816	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaacctaagagaacaaaggTtaaatcaatattcagctgta	7	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135158816	A	A	135158816	1	1	96	0	1	0	0	0	0	0	0	0	14254	1740	60	5		5	SETX	9	135158816	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	798712	135158816	6054615	790	96466											
TSC1	7248	broad.mit.edu	37	chr9	135787664	135787664	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataagtaccaaagacacttTttaccatagctattctgtgt	6	8	1	1	rs118203467		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135787664	C	C	135787664	1	2	96	0	1	0	0	0	0	0	0	0	16730	1856	64	5		5	TSC1	9	135787664	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	628848	135787664	5425767	791	96467											
DBH	1621	broad.mit.edu	37	chr9	136517329	136517329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtctgcagctctctgaGgtctcctctcccccacccct	7	19	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136517329	T	T	136517329	1	4	96	0	1	0	0	0	0	0	0	0	4283	1015	35	2		2	DBH	9	136517329	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	729665	136517329	4696102	792	96468											
FCN2	2220	broad.mit.edu	37	chr9	137778215	137778215	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccctgccccagatccccAgctcccatgtctaaaggtag	9	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137778215	G	G	137778215	1	3	96	0	1	0	0	0	0	0	0	0	5849	203	7	5		5	FCN2	9	137778215	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1260886	137778215	3435216	793	96469											
KIAA0649	9858	broad.mit.edu	37	chr9	138376528	138376528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcactctgcagcgcgacGgggctgctcggggcaccagc	15	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138376528	T	T	138376528	3	4	96	1	0	0	0	0	1	0	0	0	8257	1116	39	1	174	1	KIAA0649	9	138376528	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	598313	138376528	2836903	794	96470											
KCNT1	57582	broad.mit.edu	37	chr9	138647049	138647049	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcccccctcccgactgcAgtggtgctcagtaagcactg	10	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138647049	T	T	138647049	1	4	96	0	1	0	0	0	0	0	0	0	8161	203	7	5		5	KCNT1	9	138647049	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	270521	138647049	2566382	795	96471											
KCNT1	57582	broad.mit.edu	37	chr9	138648681	138648681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccccagccccagccccGgcctgctccagagctccttc	9	22	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138648681	T	T	138648681	1	4	96	0	1	0	0	0	0	0	0	0	8161	1131	39	1		1	KCNT1	9	138648681	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1632	138648681	2564750	796	96472											
SDCCAG3	10807	broad.mit.edu	37	chr9	139299578	139299578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgctccacctgctgaaCcaccgactccaggtcgtggt	10	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139299578	A	A	139299578	3	1	96	1	0	0	0	0	1	0	0	0	14071	507	18	3	353	3	SDCCAG3	9	139299578	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	650897	139299578	1913853	797	96473											
PMPCA	23203	broad.mit.edu	37	chr9	139306774	139306774	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagtggaaacaaagtgtacGatttcataaatgttgagcta	10	4	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139306774	A	A	139306774	1	1	96	0	1	0	0	0	0	0	0	0	12235	1073	37	4		4	PMPCA	9	139306774	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	7196	139306774	1906657	798	96474											
MAN1B1	11253	broad.mit.edu	37	chr9	140001223	140001223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccagtaagctcacctttGtgggggagcttgcccacggc	13	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140001223	T	T	140001223	3	4	96	1	0	0	0	0	1	0	0	0	9304	1377	48	3	1566	3	MAN1B1	9	140001223	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	694449	140001223	1212208	799	96475											
FBXO18	84893	broad.mit.edu	37	chr10	5956140	5956140	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttttgtaatgattataGcaagaaaaccatccaactta	4	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5956140	T	T	5956140	5	4	96	1	0	0	0	0	0	0	1	0	5788	985	34	3	1496	3	FBXO18	10	5956140	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08		5956140	129578607	800	96476											
SEPHS1	22929	broad.mit.edu	37	chr10	13380835	13380835	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggaagtcattagcatcCaaaaataaaacgggaaagcc	9	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13380835	T	T	13380835	1	4	96	0	1	0	0	0	0	0	0	0	14167	609	21	4		4	SEPHS1	10	13380835	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	7424695	13380835	122153912	801	96477											
FRMD4A	55691	broad.mit.edu	37	chr10	13838385	13838385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacaacctttatccctggCaatgaaccaagacaaacttg	5	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13838385	A	A	13838385	1	1	96	0	1	0	0	0	0	0	0	0	6111	725	25	3		3	FRMD4A	10	13838385	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	457550	13838385	121696362	802	96478											
FAM107B	83641	broad.mit.edu	37	chr10	14765734	14765734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggatctggttagtgaaGgttccaggggtgaagtggcc	17	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14765734	T	T	14765734	1	4	96	0	1	0	0	0	0	0	0	0	5436	1015	35	2		2	FAM107B	10	14765734	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	927349	14765734	120769013	803	96479											
FAM107B	83641	broad.mit.edu	37	chr10	14816766	14816766	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actctttccaattgcccgaaGagaagaacttgctagtggtt	9	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14816766	C	C	14816766	1	2	96	0	1	0	0	0	0	0	0	0	5436	957	33	4		4	FAM107B	10	14816766	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	51032	14816766	120717981	804	96480											
CDNF	441549	broad.mit.edu	37	chr10	14869930	14869930	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catagaattggttatctgtgGtgtactcagaaagtaaagta	10	4	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14869930	C	C	14869930	1	2	96	0	1	0	0	0	0	0	0	0	3198	1276	44	4		4	CDNF	10	14869930	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	53164	14869930	120664817	805	96481											
OLAH	55301	broad.mit.edu	37	chr10	15107484	15107484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagtctacttcccagcCttggtttaatgacttttccc	6	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15107484	A	A	15107484	1	1	96	0	1	0	0	0	0	0	0	0	10946	696	24	2		2	OLAH	10	15107484	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	237554	15107484	120427263	806	96482											
FAM171A1	221061	broad.mit.edu	37	chr10	15262764	15262764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagatggaagatttccaacCagaagtcccccacccccgca	7	16	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15262764	A	A	15262764	1	1	96	0	1	0	0	0	0	0	0	0	5535	609	21	2		2	FAM171A1	10	15262764	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	155280	15262764	120271983	807	96483											
ITGA8	8516	broad.mit.edu	37	chr10	15646309	15646309	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatttcttgcatttattatGagcataaggtgattttcatc	6	6	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15646309	A	A	15646309	2	1	96	1	0	0	0	0	0	0	0	1	7952	1277	45	4		4	ITGA8	10	15646309	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	383545	15646309	119888438	808	96484											
FAM188A	80013	broad.mit.edu	37	chr10	15838253	15838253	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatactagggtaggcagacaTaatgacattggagtcagaag	13	5	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15838253	C	C	15838253	1	2	96	0	1	0	0	0	0	0	0	0	5560	1421	49	5		5	FAM188A	10	15838253	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	191944	15838253	119696494	809	96485											
MRC1	4360	broad.mit.edu	37	chr10	17905786	17905786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatctctgcaaatagactaGgtaaattagtcatgctttta	7	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17905786	T	T	17905786	1	4	96	0	1	0	0	0	0	0	0	0	9850	1015	35	2		2	MRC1	10	17905786	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2067533	17905786	117628961	810	96486											
SLC39A12	221074	broad.mit.edu	37	chr10	18270151	18270151	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtgttctcgctattccatCtagaattcactcctcaagga	7	11	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18270151	A	A	18270151	1	1	96	0	1	0	0	0	0	0	0	0	14729	928	32	3		3	SLC39A12	10	18270151	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	364365	18270151	117264596	811	96487											
CACNB2	783	broad.mit.edu	37	chr10	18439999	18439999	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccttaagatttatgtagTatgattgtacttacttttaa	5	4	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18439999	A	A	18439999	1	1	96	0	1	0	0	0	0	0	0	0	2579	1653	57	5		5	CACNB2	10	18439999	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	169848	18439999	117094748	812	96488											
CACNB2	783	broad.mit.edu	37	chr10	18440046	18440046	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaagacggtgctgtttaatGtcataattaaaatattttaa	7	3	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18440046	C	C	18440046	1	2	96	0	1	0	0	0	0	0	0	0	2579	1392	48	4		4	CACNB2	10	18440046	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	47	18440046	117094701	813	96489											
CACNB2	783	broad.mit.edu	37	chr10	18795554	18795554	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatccagttttgtgaatttaCgtatacactgaatcactatg	6	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18795554	T	T	18795554	1	4	96	0	1	0	0	0	0	0	0	0	2579	551	19	4		4	CACNB2	10	18795554	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	355508	18795554	116739193	814	96490											
SPAG6	9576	broad.mit.edu	37	chr10	22700044	22700045	+	Missense_Mutation	DNP	GG	AT	AT													aagagataaaagcagaacctGgttctctccttcaagaatac							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	22700045	AT	AT	22700044	3	1	96	1	0	0	0	0	1	0	0	0	15098	1348	47	4	1437	4	SPAG6	10	22700044	Missense_Mutation	DNP	GG	TCGA-38-4625-01A-01D-1553-08	3904490	22700044	112834703	815	96491											
GPR158	57512	broad.mit.edu	37	chr10	25887278	25887278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctcagtgtcatagcaaGcgccaaggagaagactcttg	11	10	4	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25887278	T	T	25887278	3	4	96	1	0	0	0	0	1	0	0	0	6728	971	34	3	2765	3	GPR158	10	25887278	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3187234	25887278	109647469	816	96492											
GPR158	57512	broad.mit.edu	37	chr10	25887972	25887972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctcaaccaaataggacaCcaggaaaaaaagacatcttc	5	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887972	A	A	25887972	3	1	96	1	0	0	0	0	1	0	0	0	6728	506	18	3	3459	3	GPR158	10	25887972	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	694	25887972	109646775	817	96493											
GAD2	2572	broad.mit.edu	37	chr10	26534748	26534748	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctttggaggaacagaCtagaaatgaaaggaaaaaag	12	5	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26534748	A	A	26534748	1	1	96	0	1	0	0	0	0	0	0	0	6240	580	20	3		3	GAD2	10	26534748	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	646776	26534748	108999999	818	96494											
MASTL	84930	broad.mit.edu	37	chr10	27456180	27456180	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatcagaatgccacagcagtCccaaatgggaaaaagattgc	9	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27456180	T	T	27456180	3	4	96	1	0	0	0	0	1	0	0	0	9420	855	30	4	987	4	MASTL	10	27456180	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	921432	27456180	108078567	819	96495											
SVIL	6840	broad.mit.edu	37	chr10	29801632	29801632	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccaagagtgatgttagtCggaaggcttttcctaacatg	10	8	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29801632	T	T	29801632	1	4	96	0	1	0	0	0	0	0	0	0	15539	899	31	4		4	SVIL	10	29801632	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2345452	29801632	105733115	820	96496											
PARD3	56288	broad.mit.edu	37	chr10	34739444	34739444	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatcagtaatgcacctggTttttcaaaagtagcagaaaa	7	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34739444	C	C	34739444	1	2	96	0	1	0	0	0	0	0	0	0	11537	1740	60	5		5	PARD3	10	34739444	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	4937812	34739444	100795303	821	96497											
ZNF248	57209	broad.mit.edu	37	chr10	38120853	38120853	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgatgcacagtgagggctGatctgtggcagaaggatttc	14	7	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38120853	C	C	38120853	4	2	96	1	0	0	0	0	0	1	0	0	17919	1294	45	4	313	4	ZNF248	10	38120853	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3381409	38120853	97413894	822	96498											
CHAT	1103	broad.mit.edu	37	chr10	50827905	50827906	+	Missense_Mutation	DNP	CC	AA	AA													cagtttggggcccctggtggCctcggcgagaccctgcagca							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50827906	AA	AA	50827905	3	1	96	1	0	0	0	0	1	0	0	0	3344	726	26	3	576	3	CHAT	10	50827905	Missense_Mutation	DNP	CC	TCGA-38-4625-01A-01D-1553-08	12707052	50827905	84706842	823	96499											
PARG	8505	broad.mit.edu	37	chr10	51483056	51483056	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatattaaaataagaaaatGaacatgtgaaaaggtgaaaa	7	2	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51483056	T	T	51483056	1	4	96	0	1	0	0	0	0	0	0	0	11542	1305	45	3		3	PARG	10	51483056	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	655151	51483056	84051691	824	96500											
PRKG1	5592	broad.mit.edu	37	chr10	54040698	54040698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgccaaactggtcagtgCatttcatacgtgctttctgc	8	10	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54040698	A	A	54040698	1	1	96	0	1	0	0	0	0	0	0	0	12628	725	25	3		3	PRKG1	10	54040698	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2557642	54040698	81494049	825	96501											
BICC1	80114	broad.mit.edu	37	chr10	60273120	60273120	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccctcgtgttctcggactCtccgactgagcctctaactc	7	16	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60273120	T	T	60273120	1	4	96	0	1	0	0	0	0	0	0	0	1433	928	32	4		4	BICC1	10	60273120	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	6232422	60273120	75261627	826	96502											
PHYHIPL	84457	broad.mit.edu	37	chr10	60994099	60994099	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtggcatagcagagatgGaagaacttcctgtaccacat	10	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60994099	T	T	60994099	4	4	96	1	0	0	0	0	0	1	0	0	11962	1175	41	3	180	3	PHYHIPL	10	60994099	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	720979	60994099	74540648	827	96503											
NUDT13	25961	broad.mit.edu	37	chr10	74882005	74882005	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgtgctgattggatgctCtgagcagcaggaagcatggt	14	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74882005	G	G	74882005	3	3	96	1	0	0	0	0	1	0	0	0	10824	913	32	4	306	4	NUDT13	10	74882005	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	13887906	74882005	60652742	828	96504											
AGAP5	729092	broad.mit.edu	37	chr10	75476853	75476853	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attaagagatcaagaaaggaGagaggatgttagcatagaat	12	2	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75476853	C	C	75476853	1	2	96	0	1	0	0	0	0	0	0	0	371	957	33	4		4	AGAP5	10	75476853	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	594848	75476853	60057894	829	96505											
C10orf11	83938	broad.mit.edu	37	chr10	78316967	78316967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtctttttatttgcagGtgtcctggggaagtgtcgct	14	6	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78316967	T	T	78316967	3	4	96	1	0	0	0	0	1	0	0	0	1593	1275	44	3	540	3	C10orf11	10	78316967	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2840114	78316967	57217780	830	96506											
FAM35A	54537	broad.mit.edu	37	chr10	88911171	88911171	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaattgctccactgaaaatCacagtatcagaagacacagc	6	12	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88911171	T	T	88911171	2	4	96	1	0	0	0	0	0	0	0	1	5604	816	29	4		4	FAM35A	10	88911171	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	10594204	88911171	46623576	831	96507											
C10orf129	142827	broad.mit.edu	37	chr10	96972521	96972521	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttcaaagtctgtgaccctCttccctggactttcccgcct	7	15	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96972521	G	G	96972521	1	3	96	0	1	0	0	0	0	0	0	0	1604	928	32	4		4	C10orf129	10	96972521	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	8061350	96972521	38562226	832	96508											
PIK3AP1	118788	broad.mit.edu	37	chr10	98383299	98383299	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttttctgcaaaaactatGagataaagaatattctgatt	5	5	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98383299	A	A	98383299	1	1	96	0	1	0	0	0	0	0	0	0	12003	1305	45	4		4	PIK3AP1	10	98383299	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1410778	98383299	37151448	833	96509											
SEMA4G	57715	broad.mit.edu	37	chr10	102732998	102732998	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgaggtgccctgttctctctCagtgccaacgacataggaga	11	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102732998	G	G	102732998	2	3	96	1	0	0	0	0	0	0	0	1	14149	813	29	4		4	SEMA4G	10	102732998	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	4349699	102732998	32801749	834	96510											
C10orf76	79591	broad.mit.edu	37	chr10	103783277	103783277	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagccaagaggacgacaGcatcatacccatgctcccta	8	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103783277	C	C	103783277	3	2	96	1	0	0	0	0	1	0	0	0	1627	971	34	4	1519	4	C10orf76	10	103783277	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1050279	103783277	31751470	835	96511			1	75		3	3	114	G		1.364537e-05
C10orf76	79591	broad.mit.edu	37	chr10	103783347	103783347	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagaaccaaaaatgcatgaGactgctaactcctggttcct	7	11	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103783347	C	C	103783347	1	2	96	0	1	0	0	0	0	0	0	0	1627	957	33	4		4	C10orf76	10	103783347	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	70	103783347	31751400	836	96512			1	75		3	3	114	G		1.364537e-05
C10orf76	79591	broad.mit.edu	37	chr10	103783390	103783390	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacacagagaaaatttgaaGaggtggtttaccccaaagag	11	6	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103783390	C	C	103783390	1	2	96	0	1	0	0	0	0	0	0	0	1627	957	33	4		4	C10orf76	10	103783390	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	43	103783390	31751357	837	96513			1	75		3	3	114	G		1.364537e-05
SORCS1	114815	broad.mit.edu	37	chr10	108447928	108447928	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctctactgtgtgaggcattCtgcttcaataggaagactca	9	10	4	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108447928	G	G	108447928	1	3	96	0	1	0	0	0	0	0	0	0	15044	928	32	4		4	SORCS1	10	108447928	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4664538	108447928	27086819	838	96514											
XPNPEP1	7511	broad.mit.edu	37	chr10	111648231	111648231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctagaagccacttccttaCccaagcagaaagggaccaag	8	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111648231	A	A	111648231	1	1	96	0	1	0	0	0	0	0	0	0	17569	522	18	3		3	XPNPEP1	10	111648231	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3200303	111648231	23886516	839	96515											
ABLIM1	3983	broad.mit.edu	37	chr10	116335076	116335076	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggataagagtatgtgcTactcaagacaaaaggtgtat	10	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116335076	A	A	116335076	1	1	96	0	1	0	0	0	0	0	0	0	94	1537	53	5		5	ABLIM1	10	116335076	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	4686845	116335076	19199671	840	96516											
GFRA1	2674	broad.mit.edu	37	chr10	118028883	118028883	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctcttcattatcatcatCctatttctaatttcccagaa	2	12	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118028883	A	A	118028883	1	1	96	0	1	0	0	0	0	0	0	0	6411	870	30	3		3	GFRA1	10	118028883	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1693807	118028883	17505864	841	96517											
PNLIP	5406	broad.mit.edu	37	chr10	118313347	118313347	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggaccattggacgcatcAcaggttggtgaaaacagtga	13	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118313347	G	G	118313347	3	3	96	1	0	0	0	0	1	0	0	0	12244	159	6	5	586	5	PNLIP	10	118313347	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	284464	118313347	17221400	842	96518											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118368610	118368610	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgcgggaagacacgctgctCaccctcacgccctgctaagc	11	16	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118368610	T	T	118368610	2	4	96	1	0	0	0	0	0	0	0	1	12245	813	29	4		4	PNLIPRP1	10	118368610	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	55263	118368610	17166137	843	96519											
TACC2	10579	broad.mit.edu	37	chr10	123845207	123845207	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcctgccagccctggcGcccgccagccccggagtcac	11	22	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123845207	A	A	123845207	2	1	96	1	0	0	0	0	0	0	0	1	15621	1074	38	4		4	TACC2	10	123845207	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	5476597	123845207	11689540	844	96520											
C10orf90	118611	broad.mit.edu	37	chr10	128202476	128202476	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagatttttaagggcaatttGatctcttctactgtggtagc	10	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128202476	C	C	128202476	3	2	96	1	0	0	0	0	1	0	0	0	1634	1299	45	4	2076	4	C10orf90	10	128202476	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4357269	128202476	7332271	845	96521											
GLRX3	10539	broad.mit.edu	37	chr10	131958441	131958441	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaatattaggtgtttggctGtttctggccctccacctttc	9	11	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131958441	C	C	131958441	1	2	96	0	1	0	0	0	0	0	0	0	6525	1392	48	4		4	GLRX3	10	131958441	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3755965	131958441	3576306	846	96522											
KNDC1	85442	broad.mit.edu	37	chr10	135012104	135012104	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagcctgccttggcccagGaggagtccgaggagaggggc	17	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135012104	T	T	135012104	4	4	96	1	0	0	0	0	0	1	0	0	8497	1175	41	3	2146	3	KNDC1	10	135012104	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3053663	135012104	522643	847	96523											
CYP2E1	1571	broad.mit.edu	37	chr10	135352538	135352538	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtttgaggtcaggatttctCaaactgattcctttctttgc	8	8	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135352538	G	G	135352538	1	3	96	0	1	0	0	0	0	0	0	0	4203	841	29	4		4	CYP2E1	10	135352538	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	340434	135352538	182209	848	96524											
ATHL1	80162	broad.mit.edu	37	chr11	294668	294668	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actttttcagatgttagggaCccgctccagagccccctctg	9	14	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	294668	G	G	294668	3	3	96	1	0	0	0	0	1	0	0	0	1108	506	18	4	2183	4	ATHL1	11	294668	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08		294668	134711848	849	96525											
MUC6	4588	broad.mit.edu	37	chr11	1026437	1026437	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcggcattctcgtagagGccctcggcgcagacacagcc	12	16	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1026437	T	T	1026437	2	4	96	1	0	0	0	0	0	0	0	1	10074	1190	42	3		3	MUC6	11	1026437	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	731769	1026437	133980079	850	96526											
MUC5B	727897	broad.mit.edu	37	chr11	1262982	1262982	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggccaccaccaccaccacCcaggccctgttctcaacgcc	6	22	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1262982	A	A	1262982	2	1	96	1	0	0	0	0	0	0	0	1	10073	610	22	2		2	MUC5B	11	1262982	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	236545	1262982	133743534	851	96527											
MUC5B	727897	broad.mit.edu	37	chr11	1272848	1272848	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtgctccccagcagccTgccaaccttcagcgtgtcca	9	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1272848	A	A	1272848	3	1	96	1	0	0	0	0	1	0	0	0	10073	1580	55	5	14869	5	MUC5B	11	1272848	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	9866	1272848	133733668	852	96528											
MUC5B	727897	broad.mit.edu	37	chr11	1279598	1279598	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatggcaccttctacgggGtaagggcacagcagtgggtg	15	9	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1279598	T	T	1279598	5	4	96	1	0	0	0	0	0	0	1	0	10073	1275	44	3	16773	3	MUC5B	11	1279598	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	6750	1279598	133726918	853	96529											
KCNQ1	3784	broad.mit.edu	37	chr11	2798316	2798316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgcaatggactctcccGcacctctgccctcctggctc	8	19	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2798316	T	T	2798316	1	4	96	0	1	0	0	0	0	0	0	0	8152	1102	38	3		3	KCNQ1	11	2798316	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1518718	2798316	132208200	854	96530											
C11orf40	143501	broad.mit.edu	37	chr11	4592738	4592738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaagacctggagcagtGctaggatggaatattctgat	12	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4592738	T	T	4592738	3	4	96	1	0	0	0	0	1	0	0	0	1651	1319	46	3	87	3	C11orf40	11	4592738	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1794422	4592738	130413778	855	96531											
TRIM68	55128	broad.mit.edu	37	chr11	4622220	4622220	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatctctgggaggggtccctCccactgtccactacagtctc	9	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4622220	A	A	4622220	1	1	96	0	1	0	0	0	0	0	0	0	16666	870	30	3		3	TRIM68	11	4622220	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	29482	4622220	130384296	856	96532											
OR51D1	390038	broad.mit.edu	37	chr11	4660921	4660921	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtttgttactgtcaccaCtccaatgccttttcctcatt	4	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4660921	A	A	4660921	1	1	96	0	1	0	0	0	0	0	0	0	11187	580	20	3		3	OR51D1	11	4660921	5'Flank	SNP	C	TCGA-38-4625-01A-01D-1553-08	38701	4660921	130345595	857	96533											
OR51V1	283111	broad.mit.edu	37	chr11	5221702	5221702	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccatgcacaggtcagtgaGggccagcatggacaggaagt	14	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5221702	C	C	5221702	3	2	96	1	0	0	0	0	1	0	0	0	11201	1000	35	4	739	4	OR51V1	11	5221702	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	560781	5221702	129784814	858	96534											
HBG2	3048	broad.mit.edu	37	chr11	5274632	5274633	+	Intron	DNP	GG	TT	TT													ggtcaccagcacatttcccaGgagctgttgagatgaaagga							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	5274633	TT	TT	5274632	1	4	96	0	1	0	0	0	0	0	0	0	7049	991	35	2		2	HBG2	11	5274632	Intron	DNP	GG	TCGA-38-4625-01A-01D-1553-08	52930	5274632	129731884	859	96535											
DNHD1	144132	broad.mit.edu	37	chr11	6587784	6587784	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccctggctctgccaagggGaagaggttaagcatctccca	11	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6587784	A	A	6587784	1	1	96	0	1	0	0	0	0	0	0	0	4708	1189	41	4		4	DNHD1	11	6587784	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1313152	6587784	128418732	860	96536											
DCHS1	8642	broad.mit.edu	37	chr11	6651357	6651357	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgggcccaggcggctggtcCtctgggaggcgcacgcgtga	19	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6651357	T	T	6651357	2	4	96	1	0	0	0	0	0	0	0	1	4320	680	24	4		4	DCHS1	11	6651357	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	63573	6651357	128355159	861	96537											
DCHS1	8642	broad.mit.edu	37	chr11	6662213	6662213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctctcggtccagttccCcagtaactaccagctcaggt	9	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6662213	A	A	6662213	3	1	96	1	0	0	0	0	1	0	0	0	4320	623	22	2	9344	2	DCHS1	11	6662213	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	10856	6662213	128344303	862	96538											
OR2AG1	144125	broad.mit.edu	37	chr11	6806724	6806724	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccacgtcctggatcctggcAtccctaagtgccctaatata	8	14	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6806724	G	G	6806724	2	3	96	1	0	0	0	0	0	0	0	1	11078	204	8	5		5	OR2AG1	11	6806724	Silent	SNP	A	TCGA-38-4625-01A-01D-1553-08	144511	6806724	128199792	863	96539											
MICAL2	9645	broad.mit.edu	37	chr11	12230986	12230986	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagccaccacacggggggtAtaatcattctcttcccacct	7	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12230986	G	G	12230986	1	3	96	0	1	0	0	0	0	0	0	0	9663	464	16	5		5	MICAL2	11	12230986	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	5424262	12230986	122775530	864	96540											
CALCA	796	broad.mit.edu	37	chr11	14990164	14990164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttctggtattttcccaGgtgattctcttccaacctgt	6	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14990164	T	T	14990164	1	4	96	0	1	0	0	0	0	0	0	0	2601	1015	35	2		2	CALCA	11	14990164	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2759178	14990164	120016352	865	96541											
INSC	387755	broad.mit.edu	37	chr11	15257144	15257144	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtttctaaattatcttttCcagattgtgaccatcttggc	7	8	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15257144	A	A	15257144	1	1	96	0	1	0	0	0	0	0	0	0	7834	870	30	3		3	INSC	11	15257144	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	266980	15257144	119749372	866	96542											
NUCB2	4925	broad.mit.edu	37	chr11	17332935	17332935	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgctattgagttctagtgaGagtaaatggttagagttttt	11	3	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17332935	C	C	17332935	1	2	96	0	1	0	0	0	0	0	0	0	10814	957	33	4		4	NUCB2	11	17332935	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2075791	17332935	117673581	867	96543											
MRGPRX4	117196	broad.mit.edu	37	chr11	18194960	18194960	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggttgtgctctggctcctgGgctaccgcatgcgcaggaac	14	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18194960	C	C	18194960	3	2	96	1	0	0	0	0	1	0	0	0	9863	1232	43	4	159	4	MRGPRX4	11	18194960	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	862025	18194960	116811556	868	96544											
NAV2	89797	broad.mit.edu	37	chr11	19905954	19905954	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatggtttaatcccaaccCactgttccattgttccctct	5	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19905954	T	T	19905954	1	4	96	0	1	0	0	0	0	0	0	0	10278	609	21	4		4	NAV2	11	19905954	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1710994	19905954	115100562	869	96545											
NAV2	89797	broad.mit.edu	37	chr11	20112467	20112467	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcagctccgaaatgagtTaagagacaaggagatgaagc	12	7	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20112467	C	C	20112467	3	2	96	1	0	0	0	0	1	0	0	0	10278	1764	61	5	5779	5	NAV2	11	20112467	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	206513	20112467	114894049	870	96546											
DBX1	120237	broad.mit.edu	37	chr11	20178654	20178655	+	Missense_Mutation	DNP	GG	TT	TT													gctgatgtacttctgcttctGgaacatcttctccagcgcct							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	20178655	TT	TT	20178654	3	4	96	1	0	0	0	0	1	0	0	0	4292	1357	47	2	555	2	DBX1	11	20178654	Missense_Mutation	DNP	GG	TCGA-38-4625-01A-01D-1553-08	66187	20178654	114827862	871	96547											
PRMT3	10196	broad.mit.edu	37	chr11	20529774	20529774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcacaataaaaagaagtGctagttatacattgtttact	5	6	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20529774	T	T	20529774	1	4	96	0	1	0	0	0	0	0	0	0	12644	1334	46	3		3	PRMT3	11	20529774	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	351120	20529774	114476742	872	96548											
ANO5	203859	broad.mit.edu	37	chr11	22296152	22296152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgtcagacatcattccccGtctagtttactactatgctt	5	12	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22296152	T	T	22296152	3	4	96	1	0	0	0	0	1	0	0	0	700	1145	40	3	2351	3	ANO5	11	22296152	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1766378	22296152	112710364	873	96549											
ANO3	63982	broad.mit.edu	37	chr11	26568988	26568988	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttggtgagaagattggaCtatactttgcttggctggga	13	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26568988	T	T	26568988	2	4	96	1	0	0	0	0	0	0	0	1	698	564	20	4		4	ANO3	11	26568988	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	4272836	26568988	108437528	874	96550											
ANO3	63982	broad.mit.edu	37	chr11	26621311	26621311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaaaaaggggtggaaagGggagaggtctatgtttcctt	15	4	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26621311	T	T	26621311	1	4	96	0	1	0	0	0	0	0	0	0	698	1247	43	2		2	ANO3	11	26621311	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	52323	26621311	108385205	875	96551											
ANO3	63982	broad.mit.edu	37	chr11	26646140	26646140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgtagcattttaataaCtgcaattatttaagtattta	4	3	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26646140	A	A	26646140	1	1	96	0	1	0	0	0	0	0	0	0	698	580	20	3		3	ANO3	11	26646140	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	24829	26646140	108360376	876	96552											
MPPED2	744	broad.mit.edu	37	chr11	30439175	30439175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccatccattaaaccacGgggtcctttgggggagataa	11	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30439175	T	T	30439175	3	4	96	1	0	0	0	0	1	0	0	0	9836	1116	39	1	426	1	MPPED2	11	30439175	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3793035	30439175	104567341	877	96553											
ELP4	26610	broad.mit.edu	37	chr11	31531344	31531344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctaagatggcggcagtgGcaacctgcggtagtgttgcc	15	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31531344	T	T	31531344	3	4	96	1	0	0	0	0	1	0	0	0	5124	1203	42	3	15	3	ELP4	11	31531344	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1092169	31531344	103475172	878	96554											
WT1	7490	broad.mit.edu	37	chr11	32413444	32413444	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacactagtcttttccaatcCctctcatcacaatttcattc	1	14	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32413444	T	T	32413444	1	4	96	0	1	0	0	0	0	0	0	0	17535	638	22	4		4	WT1	11	32413444	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	882100	32413444	102593072	879	96555											
CCDC73	493860	broad.mit.edu	37	chr11	32634980	32634980	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcttacctggtccaatatCctttccaacatcatccacac	2	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32634980	T	T	32634980	3	4	96	1	0	0	0	0	1	0	0	0	2874	855	30	4	367	4	CCDC73	11	32634980	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	221536	32634980	102371536	880	96556											
PAMR1	25891	broad.mit.edu	37	chr11	35513733	35513733	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtacaacctgaaacattcCcaagaagaggagtgttaggc	11	8	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35513733	T	T	35513733	1	4	96	0	1	0	0	0	0	0	0	0	11507	638	22	4		4	PAMR1	11	35513733	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2878753	35513733	99492783	881	96557											
RAG1	5896	broad.mit.edu	37	chr11	36596358	36596358	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggagacagatttttcagCctttgcatgcccttcggaat	10	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36596358	T	T	36596358	3	4	96	1	0	0	0	0	1	0	0	0	13111	739	26	4	1506	4	RAG1	11	36596358	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1082625	36596358	98410158	882	96558											
RAG2	5897	broad.mit.edu	37	chr11	36615026	36615026	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccttattctgtacaggttGgcaggccggatattattggc	11	9	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36615026	T	T	36615026	2	4	96	1	0	0	0	0	0	0	0	1	13113	1335	47	2		2	RAG2	11	36615026	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	18668	36615026	98391490	883	96559											
TTC17	55761	broad.mit.edu	37	chr11	43465039	43465039	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcgtctagacttacaaGgaatacgggtgctgaagaaa	14	7	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43465039	C	C	43465039	3	2	96	1	0	0	0	0	1	0	0	0	16810	1001	35	4	2482	4	TTC17	11	43465039	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	6850013	43465039	91541477	884	96560											
ALKBH3	221120	broad.mit.edu	37	chr11	43905665	43905665	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatctggaagagaatggccCaataagtgtcttaactgtag	10	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43905665	T	T	43905665	1	4	96	0	1	0	0	0	0	0	0	0	528	609	21	4		4	ALKBH3	11	43905665	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	440626	43905665	91100851	885	96561											
ACCSL	390110	broad.mit.edu	37	chr11	44071940	44071940	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttgtgtaatttatgacaaGatggtagcctccattcatta	7	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44071940	C	C	44071940	1	2	96	0	1	0	0	0	0	0	0	0	134	957	33	4		4	ACCSL	11	44071940	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	166275	44071940	90934576	886	96562											
OR4A15	81328	broad.mit.edu	37	chr11	55135609	55135609	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggccagccagtccctgGgttcccccatgtactttttt	8	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55135609	T	T	55135609	3	4	96	1	0	0	0	0	1	0	0	0	11134	1232	43	2	252	2	OR4A15	11	55135609	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	11063669	55135609	79870907	887	96563											
OR10AG1	282770	broad.mit.edu	37	chr11	55735551	55735551	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatcagctgaatgcagactTtgtggttcatcactagagga	10	7	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55735551	A	A	55735551	3	1	96	1	0	0	0	0	1	0	0	0	10991	1841	64	5	519	5	OR10AG1	11	55735551	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	599942	55735551	79270965	888	96564											
OR8J3	81168	broad.mit.edu	37	chr11	55904311	55904311	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggcaacatttacatcaTtattcctcaggctgtagatc	6	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55904311	C	C	55904311	3	2	96	1	0	0	0	0	1	0	0	0	11336	1493	52	5	65	5	OR8J3	11	55904311	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	168760	55904311	79102205	889	96565											
OR8K3	219473	broad.mit.edu	37	chr11	56085806	56085806	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaacacaatctaacaacGgtgaatgaattcattcttac	5	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56085806	T	T	56085806	2	4	96	1	0	0	0	0	0	0	0	1	11338	1103	39	1		1	OR8K3	11	56085806	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	181495	56085806	78920710	890	96566											
OR8J1	219477	broad.mit.edu	37	chr11	56125161	56125161	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catggacaagatctatgaagGccaagtggaggcgactagtg	14	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56125161	C	C	56125161	1	2	96	0	1	0	0	0	0	0	0	0	11335	1218	42	4		4	OR8J1	11	56125161	5'Flank	SNP	G	TCGA-38-4625-01A-01D-1553-08	39355	56125161	78881355	891	96567											
OR5M3	219482	broad.mit.edu	37	chr11	56237377	56237377	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagttaatgccggcaagTatgatcattgtatattcttt	9	5	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56237377	A	A	56237377	2	1	96	1	0	0	0	0	0	0	0	1	11269	1628	57	5		5	OR5M3	11	56237377	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	112216	56237377	78769139	892	96568											
OR5M8	219484	broad.mit.edu	37	chr11	56258337	56258337	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaagtgattaatttcattGgggccacagaaggctaggtt	12	5	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56258337	T	T	56258337	2	4	96	1	0	0	0	0	0	0	0	1	11270	1335	47	2		2	OR5M8	11	56258337	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	20960	56258337	78748179	893	96569											
OR5M10	390167	broad.mit.edu	37	chr11	56344905	56344905	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagagaagacactgtgtgAagcatccagcgtaggagatg	14	6	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56344905	T	T	56344905	3	4	96	1	0	0	0	0	1	0	0	0	11267	246	9	5	658	5	OR5M10	11	56344905	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	86568	56344905	78661611	894	96570											
OR5AR1	219493	broad.mit.edu	37	chr11	56431719	56431719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatcccaccactcttggcCctctcttgctcagacaccta	5	17	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56431719	A	A	56431719	2	1	96	1	0	0	0	0	0	0	0	1	11239	610	22	2		2	OR5AR1	11	56431719	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	86814	56431719	78574797	895	96571											
OR9G9	504191	broad.mit.edu	37	chr11	56468595	56468595	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccacatgctcctcccacctGacctctgtcactttatacta	3	17	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56468595	T	T	56468595	2	4	96	1	0	0	0	0	0	0	0	1	11346	1277	45	3		3	OR9G9	11	56468595	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	36876	56468595	78537921	896	96572											
SLC43A3	29015	broad.mit.edu	37	chr11	57176804	57176804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagaggggttccagtgagCttcagggaccctccctccaa	11	14	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57176804	A	A	57176804	1	1	96	0	1	0	0	0	0	0	0	0	14748	812	28	3		3	SLC43A3	11	57176804	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	708209	57176804	77829712	897	96573											
SERPING1	710	broad.mit.edu	37	chr11	57382045	57382045	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggggcgagtatatgacccCagggcctgagacctgcagga	15	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57382045	T	T	57382045	2	4	96	1	0	0	0	0	0	0	0	1	14229	581	21	4		4	SERPING1	11	57382045	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	205241	57382045	77624471	898	96574											
PLAC1L	219990	broad.mit.edu	37	chr11	59814583	59814583	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacttgaagctggtgttatGtattttgcaggaaaacagtt	10	4	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59814583	T	T	59814583	1	4	96	0	1	0	0	0	0	0	0	0	12108	1392	48	3		3	PLAC1L	11	59814583	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2432538	59814583	75191933	899	96575											
MS4A10	341116	broad.mit.edu	37	chr11	60563025	60563025	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttccttccctctaccctctCaggtccacatccagaggctg	6	18	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60563025	G	G	60563025	1	3	96	0	1	0	0	0	0	0	0	0	9949	841	29	4		4	MS4A10	11	60563025	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	748442	60563025	74443491	900	96576											
VPS37C	55048	broad.mit.edu	37	chr11	60906352	60906352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgaacaggcagcccaagaCgaagggacccccgagcctgt	12	14	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60906352	A	A	60906352	1	1	96	0	1	0	0	0	0	0	0	0	17334	551	19	3		3	VPS37C	11	60906352	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	343327	60906352	74100164	901	96577											
VWCE	220001	broad.mit.edu	37	chr11	61058828	61058828	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccgaaggagcagagggctGagaggagaagtgcaggtgag	20	5	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61058828	A	A	61058828	1	1	96	0	1	0	0	0	0	0	0	0	17372	1305	45	4		4	VWCE	11	61058828	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	152476	61058828	73947688	902	96578											
SLC22A11	55867	broad.mit.edu	37	chr11	64331817	64331817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggtggctgattattaagGgcaaaccagaccaagcactt	10	11	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64331817	T	T	64331817	3	4	96	1	0	0	0	0	1	0	0	0	14555	1232	43	2	877	2	SLC22A11	11	64331817	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3272989	64331817	70674699	903	96579											
SF1	7536	broad.mit.edu	37	chr11	64536732	64536732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagggtcccatttaagcgagCcaactcccgaagctgcatct	9	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64536732	T	T	64536732	3	4	96	1	0	0	0	0	1	0	0	0	14258	739	26	4	1343	4	SF1	11	64536732	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	204915	64536732	70469784	904	96580											
CAPN1	823	broad.mit.edu	37	chr11	64950570	64950570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttctgggaggggctggcCgaggaacaggactctgggtc	17	8	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64950570	T	T	64950570	1	4	96	0	1	0	0	0	0	0	0	0	2648	667	23	4		4	CAPN1	11	64950570	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	413838	64950570	70055946	905	96581											
POLA2	23649	broad.mit.edu	37	chr11	65048471	65048471	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctttggtaggagcctgtCactctgctgggccagattgg	13	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65048471	T	T	65048471	2	4	96	1	0	0	0	0	0	0	0	1	12283	813	29	4		4	POLA2	11	65048471	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	97901	65048471	69958045	906	96582											
CTSF	8722	broad.mit.edu	37	chr11	66333189	66333189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggcaagccgcccatgCaggccttgtccatcttgtca	12	13	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66333189	A	A	66333189	3	1	96	1	0	0	0	0	1	0	0	0	4068	710	25	3	480	3	CTSF	11	66333189	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1284718	66333189	68673327	907	96583											
ADRBK1	156	broad.mit.edu	37	chr11	67051244	67051244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatggtcttcttgcagaaGgtaacagtctgcggcaggga	14	8	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67051244	T	T	67051244	3	4	96	1	0	0	0	0	1	0	0	0	343	1014	35	2	1457	2	ADRBK1	11	67051244	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	718055	67051244	67955272	908	96584											
MRGPRD	116512	broad.mit.edu	37	chr11	68747704	68747704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacaggacctgcatctcgGgcggcaggctcaaccagtag	13	13	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68747704	T	T	68747704	3	4	96	1	0	0	0	0	1	0	0	0	9857	1232	43	2	216	2	MRGPRD	11	68747704	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1696460	68747704	66258812	909	96585											
FADD	8772	broad.mit.edu	37	chr11	70052581	70052581	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctccgaagcgtcctgatGggccgctgctttgcgctggt	13	13	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70052581	T	T	70052581	1	4	96	0	1	0	0	0	0	0	0	0	5410	1363	47	2		2	FADD	11	70052581	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	1304877	70052581	64953935	910	96586											
NADSYN1	55191	broad.mit.edu	37	chr11	71208569	71208569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggagctctcggtctatgGgaaactcaggaaggtggcca	15	9	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71208569	T	T	71208569	3	4	96	1	0	0	0	0	1	0	0	0	10232	1232	43	2	1879	2	NADSYN1	11	71208569	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1155988	71208569	63797947	911	96587											
LRRC32	2615	broad.mit.edu	37	chr11	76376990	76376990	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggagcagcaggatctgGggtctcatggctctgtgtaa	15	9	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76376990	T	T	76376990	2	4	96	1	0	0	0	0	0	0	0	1	9074	1219	43	2		2	LRRC32	11	76376990	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	5168421	76376990	58629526	912	96588											
MYO7A	4647	broad.mit.edu	37	chr11	76870504	76870504	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccaacagcacgcacatttGaaaacctggatgcctgtgag	10	11	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76870504	C	C	76870504	3	2	96	1	0	0	0	0	1	0	0	0	10176	1291	45	4	1049	4	MYO7A	11	76870504	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	493514	76870504	58136012	913	96589											
C11orf82	220042	broad.mit.edu	37	chr11	82643734	82643734	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcatgtagataatgacattGataaatttcatgcagaccac	6	7	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82643734	C	C	82643734	3	2	96	1	0	0	0	0	1	0	0	0	1677	1290	45	4	1368	4	C11orf82	11	82643734	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5773230	82643734	52362782	914	96590											
DLG2	1740	broad.mit.edu	37	chr11	83243648	83243648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacagtgctctactgtctGgtaccttcataatttgtttg	7	8	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83243648	T	T	83243648	1	4	96	0	1	0	0	0	0	0	0	0	4595	1363	47	2		2	DLG2	11	83243648	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	599914	83243648	51762868	915	96591											
CTSC	1075	broad.mit.edu	37	chr11	88029178	88029178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatagggccagacttgcaCtcagattttctgactataga	10	8	2	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88029178	A	A	88029178	1	1	96	0	1	0	0	0	0	0	0	0	4065	580	20	3		3	CTSC	11	88029178	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4785530	88029178	46977338	916	96592											
FAT3	120114	broad.mit.edu	37	chr11	92620196	92620196	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgacccgggagaagtgaCctgctttgcaggtagtaata	13	7	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92620196	T	T	92620196	3	4	96	1	0	0	0	0	1	0	0	0	5748	507	18	4	13062	4	FAT3	11	92620196	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4591018	92620196	42386320	917	96593											
KIAA1377	57562	broad.mit.edu	37	chr11	101786111	101786111	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcccccctcggccctcgggaGagcggcgggcatcaccgacc	14	19	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101786111	C	C	101786111	3	2	96	1	0	0	0	0	1	0	0	0	8297	933	33	4	98	4	KIAA1377	11	101786111	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	9165915	101786111	33220405	918	96594											
MMP1	4312	broad.mit.edu	37	chr11	102662335	102662335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtgcagtaccctggctgCagattagaatcatctaggga	11	9	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102662335	A	A	102662335	1	1	96	0	1	0	0	0	0	0	0	0	9741	725	25	3		3	MMP1	11	102662335	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	876224	102662335	32344181	919	96595											
MMP12	4321	broad.mit.edu	37	chr11	102742386	102742386	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catcccctccaatgccagatCcaggtccaaaagcatgggct	8	15	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102742386	G	G	102742386	3	3	96	1	0	0	0	0	1	0	0	0	9744	855	30	4	876	4	MMP12	11	102742386	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	80051	102742386	32264130	920	96596											
MMP13	4322	broad.mit.edu	37	chr11	102824818	102824818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacttttatgtgttttaaCttcatactagtgtgttcact	5	6	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102824818	A	A	102824818	1	1	96	0	1	0	0	0	0	0	0	0	9745	580	20	3		3	MMP13	11	102824818	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	82432	102824818	32181698	921	96597											
CASP1	834	broad.mit.edu	37	chr11	104904888	104904888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatcaaatgttaggcaCgaagacaggccctaggtgaa	11	7	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104904888	A	A	104904888	1	1	96	0	1	0	0	0	0	0	0	0	2694	551	19	3		3	CASP1	11	104904888	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2080070	104904888	30101628	922	96598											
DDX10	1662	broad.mit.edu	37	chr11	108709290	108709290	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taacatttactgatgaagggGaggtaagattctagaagtgt	12	3	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108709290	T	T	108709290	4	4	96	1	0	0	0	0	0	1	0	0	4375	1175	41	3	2137	3	DDX10	11	108709290	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3804402	108709290	26297226	923	96599											
DDX10	1662	broad.mit.edu	37	chr11	108811239	108811239	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgatttgggggcacttagGtaccatatgccccattccca	10	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108811239	C	C	108811239	1	2	96	0	1	0	0	0	0	0	0	0	4375	1276	44	4		4	DDX10	11	108811239	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	101949	108811239	26195277	924	96600											
BCO2	83875	broad.mit.edu	37	chr11	112065407	112065407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaatttattgctgtgaatgGagcaactgcacatcctcatt	7	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112065407	T	T	112065407	3	4	96	1	0	0	0	0	1	0	0	0	1390	1174	41	3	683	3	BCO2	11	112065407	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3254168	112065407	22941109	925	96601											
USP28	57646	broad.mit.edu	37	chr11	113675615	113675615	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcatagctaagatttttatCtgcaaactgttccagaaggg	8	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113675615	A	A	113675615	3	1	96	1	0	0	0	0	1	0	0	0	17185	913	32	3	703	3	USP28	11	113675615	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1610208	113675615	21330901	926	96602											
FAM55B	120406	broad.mit.edu	37	chr11	114569276	114569276	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccaaggatgtgataggatCatcttcactggcctgtttgc	10	9	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114569276	A	A	114569276	2	1	96	1	0	0	0	0	0	0	0	1	5636	816	29	3		3	FAM55B	11	114569276	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	893661	114569276	20437240	927	96603											
SCN4B	6330	broad.mit.edu	37	chr11	118015705	118015705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcagtccagaagggacCagagcgtaggaggcgaggca	17	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118015705	A	A	118015705	1	1	96	0	1	0	0	0	0	0	0	0	14034	609	21	2		2	SCN4B	11	118015705	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3446429	118015705	16990811	928	96604											
MLL	4297	broad.mit.edu	37	chr11	118376994	118376994	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcatgtgaaccagctccttGccagcaaaactgggattcat	9	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118376994	C	C	118376994	3	2	96	1	0	0	0	0	1	0	0	0	9713	1319	46	4	10484	4	MLL	11	118376994	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	361289	118376994	16629522	929	96605											
BCL9L	283149	broad.mit.edu	37	chr11	118769541	118769541	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgccatcatgttctgcagGttcatgagatgcagattagg	11	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118769541	A	A	118769541	2	1	96	1	0	0	0	0	0	0	0	1	1387	1252	44	4		4	BCL9L	11	118769541	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	392547	118769541	16236975	930	96606											
ABCG4	64137	broad.mit.edu	37	chr11	119020801	119020801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgaagaaggtggagaaCcacatcactgaagcccagcg	11	12	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119020801	A	A	119020801	3	1	96	1	0	0	0	0	1	0	0	0	70	506	18	3	128	3	ABCG4	11	119020801	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	251260	119020801	15985715	931	96607											
SORL1	6653	broad.mit.edu	37	chr11	121391515	121391515	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaacctgggagtttcttcAggctccagccttcacgggat	13	11	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121391515	T	T	121391515	3	4	96	1	0	0	0	0	1	0	0	0	15048	188	7	5	1395	5	SORL1	11	121391515	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	2370714	121391515	13615001	932	96608											
CRTAM	56253	broad.mit.edu	37	chr11	122724859	122724859	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaggggatttttaaatgTtttggcaccctctagtggca	10	8	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122724859	G	G	122724859	1	3	96	0	1	0	0	0	0	0	0	0	3929	1740	60	5		5	CRTAM	11	122724859	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1333344	122724859	12281657	933	96609											
OR8D2	283160	broad.mit.edu	37	chr11	124189176	124189176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggatgactgccttccCctagtcatcttcttcagtgc	8	13	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124189176	A	A	124189176	3	1	96	1	0	0	0	0	1	0	0	0	11326	622	22	2	20	2	OR8D2	11	124189176	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1464317	124189176	10817340	934	96610											
OR8A1	390275	broad.mit.edu	37	chr11	124440496	124440496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctccacaatagaaactGgcctcatgttaaaactgccc	7	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124440496	T	T	124440496	3	4	96	1	0	0	0	0	1	0	0	0	11319	1348	47	2	534	2	OR8A1	11	124440496	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	251320	124440496	10566020	935	96611											
HEPACAM	220296	broad.mit.edu	37	chr11	124792769	124792769	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattgaatgtgagtagaagaTccagtggggacacagggagg	16	4	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124792769	A	A	124792769	1	1	96	0	1	0	0	0	0	0	0	0	7119	1450	50	5		5	HEPACAM	11	124792769	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	352273	124792769	10213747	936	96612											
CDON	50937	broad.mit.edu	37	chr11	125891246	125891246	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagttgagagaaagaattgtCagagtcccctgatgaatctt	11	6	2	6			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125891246	A	A	125891246	2	1	96	1	0	0	0	0	0	0	0	1	3200	813	29	3		3	CDON	11	125891246	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1098477	125891246	9115270	937	96613											
NTM	50863	broad.mit.edu	37	chr11	132016415	132016415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcattgtgcaaggtaggtGggcggggcttggcggggaga	20	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132016415	T	T	132016415	1	4	96	0	1	0	0	0	0	0	0	0	10794	1363	47	2		2	NTM	11	132016415	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6125169	132016415	2990101	938	96614											
NTM	50863	broad.mit.edu	37	chr11	132184465	132184465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgattgaaggaaagaaaGgggtgaaagtggaaaacaga	15	2	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132184465	T	T	132184465	3	4	96	1	0	0	0	0	1	0	0	0	10794	1000	35	2	910	2	NTM	11	132184465	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	168050	132184465	2822051	939	96615											
VPS26B	112936	broad.mit.edu	37	chr11	134114737	134114737	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagtgctcgtgtgctgcActccagtggcatctctgcag	12	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134114737	T	T	134114737	1	4	96	0	1	0	0	0	0	0	0	0	17325	174	6	5		5	VPS26B	11	134114737	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1930272	134114737	891779	940	96616											
GLB1L3	112937	broad.mit.edu	37	chr11	134147210	134147210	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttgtcactgttgtcctttCtcctttcagcccgtgtctct	6	15	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134147210	A	A	134147210	1	1	96	0	1	0	0	0	0	0	0	0	6494	928	32	3		3	GLB1L3	11	134147210	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	32473	134147210	859306	941	96617											
SLC6A13	6540	broad.mit.edu	37	chr12	368910	368910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaagcgtcctcctacctcCagaattctatacatctatgg	5	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	368910	A	A	368910	1	1	96	0	1	0	0	0	0	0	0	0	14790	609	21	2		2	SLC6A13	12	368910	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08		368910	133482985	942	96618											
WNK1	65125	broad.mit.edu	37	chr12	968345	968345	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaataattggccacatttGaaaattattttttcaaacta	3	6	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	968345	C	C	968345	1	2	96	0	1	0	0	0	0	0	0	0	17504	1305	45	4		4	WNK1	12	968345	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	599435	968345	132883550	943	96619											
CACNA1C	775	broad.mit.edu	37	chr12	2760919	2760919	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggacgctgctgtggaccttCatcaagtccttccaggtagc	11	13	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2760919	A	A	2760919	3	1	96	1	0	0	0	0	1	0	0	0	2566	825	29	3	4511	3	CACNA1C	12	2760919	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1792574	2760919	131090976	944	96620											
CHD4	1108	broad.mit.edu	37	chr12	6707148	6707148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catctctgcaaatttagggtCcttgttctttcgctttcggc	8	11	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6707148	A	A	6707148	3	1	96	1	0	0	0	0	1	0	0	0	3358	855	30	3	4050	3	CHD4	12	6707148	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3946229	6707148	127144747	945	96621											
CD163L1	283316	broad.mit.edu	37	chr12	7585988	7585988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accataacagttcacaccaaCatcttctccatgataacagt	3	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7585988	A	A	7585988	3	1	96	1	0	0	0	0	1	0	0	0	2998	478	17	3	4002	3	CD163L1	12	7585988	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	878840	7585988	126265907	946	96622											
TAS2R30	259293	broad.mit.edu	37	chr12	11286554	11286554	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaggctagtagcaagcCagctgctgaaatggttggtt	14	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11286554	T	T	11286554	4	4	96	1	0	0	0	0	0	1	0	0	15692	595	21	4	673	4	TAS2R30	12	11286554	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3700566	11286554	122565341	947	96623											
HIST4H4	121504	broad.mit.edu	37	chr12	14924071	14924071	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggctgcccactgtgattgCcagtcgcagaccagggctta	13	13	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14924071	T	T	14924071	1	4	96	0	1	0	0	0	0	0	0	0	7252	754	26	4		4	HIST4H4	12	14924071	5'Flank	SNP	C	TCGA-38-4625-01A-01D-1553-08	3637517	14924071	118927824	948	96624											
DERA	51071	broad.mit.edu	37	chr12	16135460	16135460	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatttagctattattaaaCgtgctaaccacttggaattt	6	7	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16135460	G	G	16135460	1	3	96	0	1	0	0	0	0	0	0	0	4485	551	19	4		4	DERA	12	16135460	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1211389	16135460	117716435	949	96625											
SLCO1C1	53919	broad.mit.edu	37	chr12	20874724	20874724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtattacttagccatccCctctgtctttcagatcacat	4	12	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20874724	A	A	20874724	1	1	96	0	1	0	0	0	0	0	0	0	14839	638	22	2		2	SLCO1C1	12	20874724	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4739264	20874724	112977171	950	96626											
ABCC9	10060	broad.mit.edu	37	chr12	22025692	22025692	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaacaaaggataactaCagaatgagatggattcttgg	10	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22025692	T	T	22025692	1	4	96	0	1	0	0	0	0	0	0	0	59	493	17	4		4	ABCC9	12	22025692	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1150968	22025692	111826203	951	96627											
KIAA0528	9847	broad.mit.edu	37	chr12	22602917	22602917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgctgtacagccaaaaaaCacaggcttctaaatcattag	7	9	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22602917	A	A	22602917	1	1	96	0	1	0	0	0	0	0	0	0	8252	493	17	3		3	KIAA0528	12	22602917	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	577225	22602917	111248978	952	96628											
ETNK1	55500	broad.mit.edu	37	chr12	22837360	22837360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagaattagcaattcatatGtgttttacagagaaattcat	6	4	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22837360	T	T	22837360	1	4	96	0	1	0	0	0	0	0	0	0	5315	1392	48	3		3	ETNK1	12	22837360	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	234443	22837360	111014535	953	96629											
CASC1	55259	broad.mit.edu	37	chr12	25302541	25302541	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttataaaacttaatataTaagcaaaatatcacacttac	1	8	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25302541	A	A	25302541	1	1	96	0	1	0	0	0	0	0	0	0	2686	1421	49	5		5	CASC1	12	25302541	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	2465181	25302541	108549354	954	96630											
ITPR2	3709	broad.mit.edu	37	chr12	26806743	26806743	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcattataaacagagatgcaTgtttgtaaatccaccttatt	6	7	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26806743	A	A	26806743	1	1	96	0	1	0	0	0	0	0	0	0	7991	1479	51	5		5	ITPR2	12	26806743	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1504202	26806743	107045152	955	96631											
ITPR2	3709	broad.mit.edu	37	chr12	26839527	26839527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatgatcttctcccctgcCtggcgttttttctttgaagt	7	11	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26839527	A	A	26839527	3	1	96	1	0	0	0	0	1	0	0	0	7991	680	24	2	7258	2	ITPR2	12	26839527	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	32784	26839527	107012368	956	96632											
MRPS35	60488	broad.mit.edu	37	chr12	27869349	27869349	+	Frame_Shift_Del	DEL	G	-	-													atgggttatccagtaaaaaaGggcgtgcccatggcaaagga							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27869349	-	-	27869349	7	5	96	1	0	1	0	1	0	0	0	0	9938	991	35	0	289	0	MRPS35	12	27869349	Frame_Shift_Del	DEL	G	TCGA-38-4625-01A-01D-1553-08	1029822	27869349	105982546	957	96633											
OVCH1	341350	broad.mit.edu	37	chr12	29592260	29592260	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctctttgagttactcaCcactgaattttcccatatat	3	12	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29592260	A	A	29592260	5	1	96	1	0	0	0	0	0	0	1	0	11417	521	18	3	151	3	OVCH1	12	29592260	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	1722911	29592260	104259635	958	96634											
TMTC1	83857	broad.mit.edu	37	chr12	29664947	29664947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacacagggggaaagcccgGtccacatgggagtgaattat	13	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29664947	T	T	29664947	1	4	96	0	1	0	0	0	0	0	0	0	16383	1276	44	3		3	TMTC1	12	29664947	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	72687	29664947	104186948	959	96635											
TMTC1	83857	broad.mit.edu	37	chr12	29665010	29665010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacccatgttcatccagGcctgtgcttggtctgggttt	11	12	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29665010	T	T	29665010	3	4	96	1	0	0	0	0	1	0	0	0	16383	1203	42	3	182	3	TMTC1	12	29665010	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	63	29665010	104186885	960	96636											
TMTC1	83857	broad.mit.edu	37	chr12	29736464	29736464	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatcgattcagccaagtgcAgagcttgctcagtccatgca	9	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29736464	T	T	29736464	3	4	96	1	0	0	0	0	1	0	0	0	16383	188	7	5	1398	5	TMTC1	12	29736464	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	71454	29736464	104115431	961	96637											
SYT10	341359	broad.mit.edu	37	chr12	33529782	33529782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattatggtgtggaaggtgGtttaggagaagggcaggatc	18	3	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33529782	T	T	33529782	3	4	96	1	0	0	0	0	1	0	0	0	15585	1261	44	3	20	3	SYT10	12	33529782	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3793318	33529782	100322113	962	96638											
IRAK4	51135	broad.mit.edu	37	chr12	44171364	44171364	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttctattaaaactttgaAtaacttccaacctatagctg	3	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44171364	T	T	44171364	1	4	96	0	1	0	0	0	0	0	0	0	7895	116	4	5		5	IRAK4	12	44171364	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	10641582	44171364	89680531	963	96639											
NELL2	4753	broad.mit.edu	37	chr12	45001031	45001031	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctcctccattcctacaGccatctttgcaaaatgctaa	5	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45001031	T	T	45001031	2	4	96	1	0	0	0	0	0	0	0	1	10429	958	34	3		3	NELL2	12	45001031	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	829667	45001031	88850864	964	96640											
MLL2	8085	broad.mit.edu	37	chr12	49446330	49446330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggatgaatttcagggacCctcaaaccctactcacctag	9	12	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49446330	A	A	49446330	1	1	96	0	1	0	0	0	0	0	0	0	9714	638	22	2		2	MLL2	12	49446330	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4445299	49446330	84405565	965	96641											
MCRS1	10445	broad.mit.edu	37	chr12	49952452	49952452	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtgtgatcttggcagcctCagccctgatgagggcaatga	14	9	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49952452	G	G	49952452	3	3	96	1	0	0	0	0	1	0	0	0	9492	835	29	4	29	4	MCRS1	12	49952452	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	506122	49952452	83899443	966	96642											
MCRS1	10445	broad.mit.edu	37	chr12	49959614	49959614	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatggaactgctacactcCagccctctgagatgacaggg	11	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49959614	T	T	49959614	1	4	96	0	1	0	0	0	0	0	0	0	9492	609	21	4		4	MCRS1	12	49959614	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	7162	49959614	83892281	967	96643											
MCRS1	10445	broad.mit.edu	37	chr12	49959936	49959936	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgccctgccagtgactcctCatcctctgagcggctggcag	11	16	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49959936	G	G	49959936	3	3	96	1	0	0	0	0	1	0	0	0	9492	835	29	4	1367	4	MCRS1	12	49959936	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	322	49959936	83891959	968	96644											
PRPF40B	25766	broad.mit.edu	37	chr12	50037148	50037148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgctgcccttggaggacGgggctccccttcctcccatc	13	16	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50037148	T	T	50037148	3	4	96	1	0	0	0	0	1	0	0	0	12678	1116	39	1	2371	1	PRPF40B	12	50037148	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	77212	50037148	83814747	969	96645											
SMARCD1	6602	broad.mit.edu	37	chr12	50490683	50490683	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaagactcagcgggagttCatgctgagctttgccagaga	13	9	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50490683	T	T	50490683	2	4	96	1	0	0	0	0	0	0	0	1	14891	825	29	4		4	SMARCD1	12	50490683	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	453535	50490683	83361212	970	96646											
DIP2B	57609	broad.mit.edu	37	chr12	51034617	51034617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcgatctgggggagccaggGatgaacgatatcgatcaggt	15	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51034617	T	T	51034617	3	4	96	1	0	0	0	0	1	0	0	0	4568	1174	41	3	293	3	DIP2B	12	51034617	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	543934	51034617	82817278	971	96647											
KRT6A	3853	broad.mit.edu	37	chr12	52886347	52886347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagtcctcttctccctcCctcctaggtctccctggcag	8	18	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52886347	A	A	52886347	1	1	96	0	1	0	0	0	0	0	0	0	8551	638	22	2		2	KRT6A	12	52886347	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1851730	52886347	80965548	972	96648											
KRT73	319101	broad.mit.edu	37	chr12	53009975	53009975	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgtagtcctccaccacttCgcgcacgctcctcagctccg	7	19	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53009975	A	A	53009975	4	1	96	1	0	0	0	0	0	1	0	0	8557	893	31	3	1017	3	KRT73	12	53009975	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	123628	53009975	80841920	973	96649											
SP1	6667	broad.mit.edu	37	chr12	53804598	53804598	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgaagatttttcttgtttTtgatcaccttctcatactgg	6	8	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53804598	A	A	53804598	1	1	96	0	1	0	0	0	0	0	0	0	15073	1856	64	5		5	SP1	12	53804598	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	794623	53804598	80047297	974	96650											
HNRNPA1	3178	broad.mit.edu	37	chr12	54675051	54675051	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcagaagcacgtgtcttgTtgcgacctgaacgaacaata	11	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54675051	C	C	54675051	1	2	96	0	1	0	0	0	0	0	0	0	7324	1740	60	5		5	HNRNPA1	12	54675051	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	870453	54675051	79176844	975	96651											
OR6C76	390326	broad.mit.edu	37	chr12	55820133	55820133	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcgttcctatttcttacGtatgtactgagtgttactgg	8	8	2	1	rs143110732	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55820133	T	T	55820133	2	4	96	1	0	0	0	0	0	0	0	1	11294	1132	40	3		3	OR6C76	12	55820133	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1145082	55820133	78031762	976	96652											
ARHGAP9	64333	broad.mit.edu	37	chr12	57867567	57867567	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatgggtaaatgcactgctCtttcccacaggcatggaaga	12	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57867567	T	T	57867567	1	4	96	0	1	0	0	0	0	0	0	0	891	928	32	4		4	ARHGAP9	12	57867567	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2047434	57867567	75984328	977	96653											
AGAP2	116986	broad.mit.edu	37	chr12	58126629	58126629	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagatcactacactcaccCtcctggaagacccgatccac	7	16	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58126629	T	T	58126629	2	4	96	1	0	0	0	0	0	0	0	1	368	695	24	4		4	AGAP2	12	58126629	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	259062	58126629	75725266	978	96654											
SLC16A7	9194	broad.mit.edu	37	chr12	60098908	60098908	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccctgtttttatgttatAgtcacttaaaaccaatcaaa	3	8	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60098908	C	C	60098908	1	2	96	0	1	0	0	0	0	0	0	0	14526	435	15	5		5	SLC16A7	12	60098908	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1972279	60098908	73752987	979	96655											
HELB	92797	broad.mit.edu	37	chr12	66712591	66712591	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtaagtataaacttctatGagatgtagagttaagtataa	8	2	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66712591	T	T	66712591	1	4	96	0	1	0	0	0	0	0	0	0	7112	1305	45	3		3	HELB	12	66712591	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6613683	66712591	67139304	980	96656											
GRIP1	23426	broad.mit.edu	37	chr12	66856730	66856730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcccctttagggccagcCgggtctgatgatggggaagg	18	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66856730	A	A	66856730	3	1	96	1	0	0	0	0	1	0	0	0	6853	652	23	1	2278	1	GRIP1	12	66856730	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	144139	66856730	66995165	981	96657											
PTPRB	5787	broad.mit.edu	37	chr12	70925736	70925736	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagttatttccccttgtcaGattaaggtcctggatatttt	7	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70925736	T	T	70925736	1	4	96	0	1	0	0	0	0	0	0	0	12904	957	33	3		3	PTPRB	12	70925736	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4069006	70925736	62926159	982	96658											
PTPRB	5787	broad.mit.edu	37	chr12	70989842	70989842	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttacctgttgatccattGgtataaactgaaaaagaacg	8	7	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70989842	A	A	70989842	2	1	96	1	0	0	0	0	0	0	0	1	12904	1335	47	4		4	PTPRB	12	70989842	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	64106	70989842	62862053	983	96659											
PTPRR	5801	broad.mit.edu	37	chr12	71054789	71054789	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctacatccagcatgagcTgtaggaggggctgggcactg	14	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71054789	A	A	71054789	3	1	96	1	0	0	0	0	1	0	0	0	12918	1580	55	5	288	5	PTPRR	12	71054789	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	64947	71054789	62797106	984	96660											
LGR5	8549	broad.mit.edu	37	chr12	71953251	71953251	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttccataaagaaaagcagtGagaacttccattagtcatat	6	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71953251	C	C	71953251	1	2	96	0	1	0	0	0	0	0	0	0	8829	1305	45	4		4	LGR5	12	71953251	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	898462	71953251	61898644	985	96661											
TBC1D15	64786	broad.mit.edu	37	chr12	72314680	72314681	+	Intron	DNP	TC	AA	AA													ctggcttttctatttggtggTcctgatatacagaacgtttc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72314681	AA	AA	72314680	1	1	96	0	1	0	0	0	0	0	0	0	15723	1682	58	5		5	TBC1D15	12	72314680	Intron	DNP	TC	TCGA-38-4625-01A-01D-1553-08	361429	72314680	61537215	986	96662											
TRHDE	29953	broad.mit.edu	37	chr12	73046866	73046866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgtcataatccatgtaGctcgaaatccacatggtcga	8	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73046866	T	T	73046866	3	4	96	1	0	0	0	0	1	0	0	0	16603	971	34	3	2845	3	TRHDE	12	73046866	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	732186	73046866	60805029	987	96663											
CAPS2	84698	broad.mit.edu	37	chr12	75741388	75741388	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatattttatcttgacattCcttttctttatagttagttt	3	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75741388	A	A	75741388	1	1	96	0	1	0	0	0	0	0	0	0	2664	870	30	3		3	CAPS2	12	75741388	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2694522	75741388	58110507	988	96664											
NAV3	89795	broad.mit.edu	37	chr12	78593380	78593380	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtaaagacggccagattgGatggtagaaaataacaagca	12	5	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78593380	A	A	78593380	1	1	96	0	1	0	0	0	0	0	0	0	10279	1189	41	4		4	NAV3	12	78593380	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2851992	78593380	55258515	989	96665											
ACSS3	79611	broad.mit.edu	37	chr12	81568735	81568735	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtgacgttgggatgcaCagggcaaatgacattagaaa	13	6	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81568735	T	T	81568735	1	4	96	0	1	0	0	0	0	0	0	0	190	493	17	4		4	ACSS3	12	81568735	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2975355	81568735	52283160	990	96666											
CEP290	80184	broad.mit.edu	37	chr12	88454728	88454728	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacttttttcattaaaccaAtggttttttccagttctggg	6	8	2	0	rs117852025	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88454728	G	G	88454728	3	3	96	1	0	0	0	0	1	0	0	0	3283	101	4	5	1070	5	CEP290	12	88454728	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	6885993	88454728	45397167	991	96667											
CLLU1OS	574016	broad.mit.edu	37	chr12	92814926	92814926	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgaaatctcatagtttgGaggtaaacttgttagcaagg	10	5	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92814926	A	A	92814926	3	1	96	1	0	0	0	0	1	0	0	0	3573	1174	41	4	143	4	CLLU1OS	12	92814926	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4360198	92814926	41036969	992	96668											
EEA1	8411	broad.mit.edu	37	chr12	93213135	93213135	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactggttaagaacagcagtCtctccttcaccagcctgaat	7	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93213135	A	A	93213135	3	1	96	1	0	0	0	0	1	0	0	0	4961	912	32	3	2622	3	EEA1	12	93213135	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	398209	93213135	40638760	993	96669											
C12orf63	374467	broad.mit.edu	37	chr12	97093849	97093849	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccaatacctgcaggctAtaaagccactggaaaaatga	8	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97093849	C	C	97093849	3	2	96	1	0	0	0	0	1	0	0	0	1719	449	16	5	1773	5	C12orf63	12	97093849	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	3880714	97093849	36758046	994	96670											
APAF1	317	broad.mit.edu	37	chr12	99097167	99097167	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctttttgacattcatactAgtggcctattgggagaaatc	9	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99097167	T	T	99097167	3	4	96	1	0	0	0	0	1	0	0	0	757	420	15	5	2551	5	APAF1	12	99097167	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	2003318	99097167	34754728	995	96671											
ANKS1B	56899	broad.mit.edu	37	chr12	99166797	99166797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcaaagtctttaatctGttgaaagggggtgggtactc	12	6	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99166797	T	T	99166797	1	4	96	0	1	0	0	0	0	0	0	0	689	1392	48	3		3	ANKS1B	12	99166797	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	69630	99166797	34685098	996	96672											
STAB2	55576	broad.mit.edu	37	chr12	104060050	104060050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagggacacctgcactgacCtcctgtctctccctccaggg	9	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104060050	A	A	104060050	1	1	96	0	1	0	0	0	0	0	0	0	15356	696	24	2		2	STAB2	12	104060050	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4893253	104060050	29791845	997	96673											
STAB2	55576	broad.mit.edu	37	chr12	104081786	104081786	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcagctagctggagcacgCattcacatcagcatcaggga	11	11	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104081786	T	T	104081786	1	4	96	0	1	0	0	0	0	0	0	0	15356	725	25	4		4	STAB2	12	104081786	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	21736	104081786	29770109	998	96674											
NT5DC3	51559	broad.mit.edu	37	chr12	104179087	104179087	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaggcttaaagaaaaagtGagagagaaaaataatatatc	8	4	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104179087	A	A	104179087	1	1	96	0	1	0	0	0	0	0	0	0	10787	1305	45	4		4	NT5DC3	12	104179087	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	97301	104179087	29672808	999	96675											
HSP90B1	7184	broad.mit.edu	37	chr12	104324296	104324296	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actcaccggccgcacgccatGagggccctgtgggtgctggg	16	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104324296	A	A	104324296	3	1	96	1	0	0	0	0	1	0	0	0	7472	1290	45	4	5	4	HSP90B1	12	104324296	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	145209	104324296	29527599	1000	96676											
POLR3B	55703	broad.mit.edu	37	chr12	106889962	106889962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctgtaggtttttcagaGgcattgcctttaaggaagaa	11	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106889962	T	T	106889962	1	4	96	0	1	0	0	0	0	0	0	0	12324	1015	35	2		2	POLR3B	12	106889962	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2565666	106889962	26961933	1001	96677											
PRDM4	11108	broad.mit.edu	37	chr12	108138465	108138465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaaggacaccaactacaCaatcaatgatttaaacagca	7	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108138465	A	A	108138465	1	1	96	0	1	0	0	0	0	0	0	0	12565	493	17	3		3	PRDM4	12	108138465	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1248503	108138465	25713430	1002	96678											
WSCD2	9671	broad.mit.edu	37	chr12	108589971	108589971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaggggagggttgtccGggagaaggaggaagagcgag	20	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108589971	T	T	108589971	3	4	96	1	0	0	0	0	1	0	0	0	17534	1116	39	1	364	1	WSCD2	12	108589971	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	451506	108589971	25261924	1003	96679											
ACACB	32	broad.mit.edu	37	chr12	109691918	109691918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagggaggggatattgctGcataaccaggcataatcata	11	8	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109691918	T	T	109691918	1	4	96	0	1	0	0	0	0	0	0	0	107	1334	46	3		3	ACACB	12	109691918	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1101947	109691918	24159977	1004	96680											
MYO1H	283446	broad.mit.edu	37	chr12	109845821	109845821	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaatgaactgtgggcgcCtcatgggcagagatggtgtc	17	7	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109845821	T	T	109845821	1	4	96	0	1	0	0	0	0	0	0	0	10169	696	24	4		4	MYO1H	12	109845821	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	153903	109845821	24006074	1005	96681											
PTPN11	5781	broad.mit.edu	37	chr12	112890950	112890950	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagttttgtgaaagaacaacAtgaacccatagtagagctaa	8	6	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112890950	T	T	112890950	1	4	96	0	1	0	0	0	0	0	0	0	12886	232	8	5		5	PTPN11	12	112890950	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	3045129	112890950	20960945	1006	96682											
DDX54	79039	broad.mit.edu	37	chr12	113607474	113607474	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaaataaataaaaggaatCatcttctgctggggtcaaac	7	6	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113607474	T	T	113607474	1	4	96	0	1	0	0	0	0	0	0	0	4405	841	29	4		4	DDX54	12	113607474	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	716524	113607474	20244421	1007	96683											
RBM19	9904	broad.mit.edu	37	chr12	114385123	114385123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagcctcctggccagccCaggacggggcctcacctgga	12	18	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114385123	A	A	114385123	1	1	96	0	1	0	0	0	0	0	0	0	13229	609	21	2		2	RBM19	12	114385123	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	777649	114385123	19466772	1008	96684											
TBX5	6910	broad.mit.edu	37	chr12	114841432	114841432	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaaaagggatgattatagtCgttgggttcgttttggggtt	16	2	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114841432	G	G	114841432	1	3	96	0	1	0	0	0	0	0	0	0	15783	899	31	4		4	TBX5	12	114841432	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	456309	114841432	19010463	1009	96685											
GCN1L1	10985	broad.mit.edu	37	chr12	120576409	120576409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagggcccacattgcgaCtgccttggcagaataatcgc	12	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120576409	A	A	120576409	1	1	96	0	1	0	0	0	0	0	0	0	6361	580	20	3		3	GCN1L1	12	120576409	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5734977	120576409	13275486	1010	96686											
RPLP0	6175	broad.mit.edu	37	chr12	120636414	120636414	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaagcacttcagggttgtaGatgctgccattgtcgaacac	10	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120636414	C	C	120636414	3	2	96	1	0	0	0	0	1	0	0	0	13715	932	33	4	371	4	RPLP0	12	120636414	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	60005	120636414	13215481	1011	96687											
VPS33A	65082	broad.mit.edu	37	chr12	122748448	122748448	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagcattcaaatgactcttAcatgatgatgaactatcaaa	5	8	4	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122748448	G	G	122748448	1	3	96	0	1	0	0	0	0	0	0	0	17328	406	14	5		5	VPS33A	12	122748448	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2112034	122748448	11103447	1012	96688											
DNAH10	196385	broad.mit.edu	37	chr12	124293409	124293409	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccacactgaaaccattcTgacggcacctgagatcatcc	7	14	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124293409	A	A	124293409	3	1	96	1	0	0	0	0	1	0	0	0	4638	1580	55	5	2769	5	DNAH10	12	124293409	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	1544961	124293409	9558486	1013	96689											
DNAH10	196385	broad.mit.edu	37	chr12	124311115	124311115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgaatttcaggtagttGtagatagatgggtaatactt	11	2	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124311115	T	T	124311115	1	4	96	0	1	0	0	0	0	0	0	0	4638	1392	48	3		3	DNAH10	12	124311115	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	17706	124311115	9540780	1014	96690											
DHX37	57647	broad.mit.edu	37	chr12	125451531	125451531	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcagtggtggccatttattCgggggtgaggtgggggatgg	20	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125451531	A	A	125451531	1	1	96	0	1	0	0	0	0	0	0	0	4550	899	31	3		3	DHX37	12	125451531	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1140416	125451531	8400364	1015	96691											
DHX37	57647	broad.mit.edu	37	chr12	125452996	125452996	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggacttttctgagccactCggagatgggccctcccacac	11	14	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125452996	A	A	125452996	1	1	96	0	1	0	0	0	0	0	0	0	4550	899	31	3		3	DHX37	12	125452996	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1465	125452996	8398899	1016	96692											
RIMBP2	23504	broad.mit.edu	37	chr12	130898862	130898862	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtaatcgtctgcgagcaaGtgggggtgaagaacagagcg	16	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130898862	A	A	130898862	1	1	96	0	1	0	0	0	0	0	0	0	13472	1044	36	4		4	RIMBP2	12	130898862	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	5445866	130898862	2953033	1017	96693											
EP400	57634	broad.mit.edu	37	chr12	132498024	132498024	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actccagtgttgtctcttgtCctgtttgcagccaacaacgt	8	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132498024	T	T	132498024	1	4	96	0	1	0	0	0	0	0	0	0	5191	870	30	4		4	EP400	12	132498024	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1599162	132498024	1353871	1018	96694											
POLE	5426	broad.mit.edu	37	chr12	133256531	133256531	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacccctggaaagtctgggtGatactcaccaagtccagatc	9	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133256531	A	A	133256531	1	1	96	0	1	0	0	0	0	0	0	0	12291	1305	45	4		4	POLE	12	133256531	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	758507	133256531	595364	1019	96695											
GOLGA3	2802	broad.mit.edu	37	chr12	133357453	133357453	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagggcctggacaagatgCttcatctggcgatcctcctc	11	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133357453	T	T	133357453	2	4	96	1	0	0	0	0	0	0	0	1	6618	796	28	4		4	GOLGA3	12	133357453	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	100922	133357453	494442	1020	96696											
GJB6	10804	broad.mit.edu	37	chr13	20797639	20797639	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgctggtttatccctaaAcagacaaaagtgggcaaagg	11	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20797639	T	T	20797639	1	4	96	0	1	0	0	0	0	0	0	0	6476	58	2	5		5	GJB6	13	20797639	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08		20797639	94372239	1021	96697											
CDK8	1024	broad.mit.edu	37	chr13	26927935	26927935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccagttcagttacctcGgggaatggtgaagtcactat	12	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26927935	T	T	26927935	3	4	96	1	0	0	0	0	1	0	0	0	3180	1116	39	1	388	1	CDK8	13	26927935	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	6130296	26927935	88241943	1022	96698											
WASF3	10810	broad.mit.edu	37	chr13	27151879	27151879	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaaaaaatcaaaaccAggaaattgacattggtacaa	6	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27151879	T	T	27151879	1	4	96	0	1	0	0	0	0	0	0	0	17381	203	7	5		5	WASF3	13	27151879	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	223944	27151879	88017999	1023	96699											
WASF3	10810	broad.mit.edu	37	chr13	27255391	27255391	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacctcagcagccgccccCcccgcctccccctcaggccc	7	26	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27255391	T	T	27255391	3	4	96	1	0	0	0	0	1	0	0	0	17381	623	22	4	939	4	WASF3	13	27255391	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	103512	27255391	87914487	1024	96700											
FLT1	2321	broad.mit.edu	37	chr13	29008254	29008254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgactgttgcttcacagGtcagaagccctatttctttg	8	10	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29008254	T	T	29008254	3	4	96	1	0	0	0	0	1	0	0	0	5999	1261	44	3	3766	3	FLT1	13	29008254	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1752863	29008254	86161624	1025	96701											
FRY	10129	broad.mit.edu	37	chr13	32783856	32783856	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcagcagcgacacagtTctcctaccctatgtaagtgt	11	11	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32783856	A	A	32783856	2	1	96	1	0	0	0	0	0	0	0	1	6123	1770	62	5		5	FRY	13	32783856	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	3775602	32783856	82386022	1026	96702											
FRY	10129	broad.mit.edu	37	chr13	32808579	32808579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaagagaaaaaaaaaatGgttgacttgtaaataagtac	7	3	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32808579	T	T	32808579	1	4	96	0	1	0	0	0	0	0	0	0	6123	1363	47	2		2	FRY	13	32808579	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	24723	32808579	82361299	1027	96703											
FREM2	341640	broad.mit.edu	37	chr13	39431937	39431937	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggttgccagggatcgtgAgtattgttctgtgtggtaga	17	4	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39431937	G	G	39431937	1	3	96	0	1	0	0	0	0	0	0	0	6105	319	11	5		5	FREM2	13	39431937	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	6623358	39431937	75737941	1028	96704											
AKAP11	11215	broad.mit.edu	37	chr13	42869852	42869852	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacatttctgggttttaatGaagagacagatgctgctcat	9	7	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42869852	T	T	42869852	4	4	96	1	0	0	0	0	0	1	0	0	447	1291	45	3	200	3	AKAP11	13	42869852	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3437915	42869852	72300026	1029	96705											
C13orf18	80183	broad.mit.edu	37	chr13	46952048	46952048	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatgaatttctcgaagaGgcagattgacacagaggaga	13	5	1	6			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46952048	T	T	46952048	1	4	96	0	1	0	0	0	0	0	0	0	1733	1015	35	2		2	C13orf18	13	46952048	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	4082196	46952048	68217830	1030	96706											
LRCH1	23143	broad.mit.edu	37	chr13	47260213	47260213	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagccaatgccccatgggAtgtgctgttataggagccaa	11	10	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47260213	T	T	47260213	1	4	96	0	1	0	0	0	0	0	0	0	9019	348	12	5		5	LRCH1	13	47260213	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	308165	47260213	67909665	1031	96707											
CDADC1	81602	broad.mit.edu	37	chr13	49852428	49852428	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagcaagcttcaaaaatacAttgcaaagtgtcttttcaga	6	7	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49852428	T	T	49852428	1	4	96	0	1	0	0	0	0	0	0	0	3083	232	8	5		5	CDADC1	13	49852428	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2592215	49852428	65317450	1032	96708											
LECT1	11061	broad.mit.edu	37	chr13	53307452	53307452	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttccattgacccatcttGtaatttcccattgatactca	3	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53307452	A	A	53307452	4	1	96	1	0	0	0	0	0	1	0	0	8784	1386	48	4	768	4	LECT1	13	53307452	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3455024	53307452	61862426	1033	96709											
LECT1	11061	broad.mit.edu	37	chr13	53313872	53313872	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaggcacttggagactcCctgggcaccctgggatctgt	14	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53313872	A	A	53313872	1	1	96	0	1	0	0	0	0	0	0	0	8784	638	22	2		2	LECT1	13	53313872	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	6420	53313872	61856006	1034	96710											
SLITRK6	84189	broad.mit.edu	37	chr13	86369960	86369960	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctccaaccaagtttttaaCtgcaataagtcacaattgca	4	10	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86369960	G	G	86369960	3	3	96	1	0	0	0	0	1	0	0	0	14861	564	20	4	1845	4	SLITRK6	13	86369960	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	33056088	86369960	28799918	1035	96711											
FARP1	10160	broad.mit.edu	37	chr13	99042122	99042122	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacagcgaaaactttatcgGacaaagctatcttctgcccc	6	13	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99042122	T	T	99042122	1	4	96	0	1	0	0	0	0	0	0	0	5733	1189	41	3		3	FARP1	13	99042122	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	12672162	99042122	16127756	1036	96712											
DOCK9	23348	broad.mit.edu	37	chr13	99452598	99452598	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgatcatgtccacctcggCcgaggagcacagctgccgga	12	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99452598	G	G	99452598	3	3	96	1	0	0	0	0	1	0	0	0	4734	739	26	4	324	4	DOCK9	13	99452598	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	410476	99452598	15717280	1037	96713											
DOCK9	23348	broad.mit.edu	37	chr13	99461650	99461650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtccccagaagcctgcGgcccgagtgcatgacctcgg	14	14	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99461650	T	T	99461650	3	4	96	1	0	0	0	0	1	0	0	0	4734	1116	39	1	915	1	DOCK9	13	99461650	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	9052	99461650	15708228	1038	96714											
IRS2	8660	broad.mit.edu	37	chr13	110434665	110434665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagaccattctggaagcCggcagaggtctctctgcgca	13	11	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110434665	A	A	110434665	3	1	96	1	0	0	0	0	1	0	0	0	7911	652	23	1	288	1	IRS2	13	110434665	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	10973015	110434665	4735213	1039	96715											
COL4A2	1284	broad.mit.edu	37	chr13	111119407	111119407	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgcataggagggcccaagGgattgccaggcctgccagga	16	10	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111119407	C	C	111119407	3	2	96	1	0	0	0	0	1	0	0	0	3722	1233	43	4	2161	4	COL4A2	13	111119407	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	684742	111119407	4050471	1040	96716											
COL4A2	1284	broad.mit.edu	37	chr13	111134847	111134847	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtctaacccagcacttttCtcttttcctctgaaggagat	6	11	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111134847	A	A	111134847	1	1	96	0	1	0	0	0	0	0	0	0	3722	928	32	3		3	COL4A2	13	111134847	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	15440	111134847	4035031	1041	96717											
CARS2	79587	broad.mit.edu	37	chr13	111303475	111303475	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgagagacaggcagtcacGaggctttgcttttacgcttc	12	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111303475	A	A	111303475	1	1	96	0	1	0	0	0	0	0	0	0	2684	1073	37	4		4	CARS2	13	111303475	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	168628	111303475	3866403	1042	96718											
POTEG	404785	broad.mit.edu	37	chr14	19571455	19571455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaaacttttggtttaacGttttttttgttttttttttt	4	2	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19571455	T	T	19571455	1	4	96	0	1	0	0	0	0	0	0	0	12362	1160	40	3		3	POTEG	14	19571455	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08		19571455	87778085	1043	96719											
OR4M1	441670	broad.mit.edu	37	chr14	20248811	20248811	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacactttgttggggcttcGgagatgttcttgctcacagt	11	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20248811	C	C	20248811	2	2	96	1	0	0	0	0	0	0	0	1	11169	1103	39	4		4	OR4M1	14	20248811	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	677356	20248811	87100729	1044	96720											
OR4K5	79317	broad.mit.edu	37	chr14	20389218	20389218	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaatgatctcctgggctgtGagcttggtgcacacattaag	12	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20389218	C	C	20389218	2	2	96	1	0	0	0	0	0	0	0	1	11167	1277	45	4		4	OR4K5	14	20389218	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	140407	20389218	86960322	1045	96721											
OR4K1	79544	broad.mit.edu	37	chr14	20404218	20404218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatatgtaagcctctgcaCtacagtacaattatgaaccg	7	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20404218	A	A	20404218	3	1	96	1	0	0	0	0	1	0	0	0	11161	564	20	3	395	3	OR4K1	14	20404218	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	15000	20404218	86945322	1046	96722											
OR11H4	390442	broad.mit.edu	37	chr14	20711254	20711254	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctctccaagaccaaggccAtctcattttctgggtgcttc	7	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20711254	T	T	20711254	3	4	96	1	0	0	0	0	1	0	0	0	11022	217	8	5	306	5	OR11H4	14	20711254	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	307036	20711254	86638286	1047	96723											
ACIN1	22985	broad.mit.edu	37	chr14	23564591	23564591	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttgccgaagctttgaatcGaatatattcggaaaccctcg	8	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23564591	C	C	23564591	1	2	96	0	1	0	0	0	0	0	0	0	142	1073	37	4		4	ACIN1	14	23564591	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2853337	23564591	83784949	1048	96724											
MYH7	4625	broad.mit.edu	37	chr14	23884924	23884924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgctctgtctgctccaccaCggcacgcaactcctccagct	7	20	2	0	rs45464193		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23884924	A	A	23884924	3	1	96	1	0	0	0	0	1	0	0	0	10133	536	19	3	760	3	MYH7	14	23884924	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	320333	23884924	83464616	1049	96725											
STXBP6	29091	broad.mit.edu	37	chr14	25444047	25444047	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaacaagtgaggacagcaCgcagtgaatcttttaaagaa	10	6	1	4	rs139809980	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25444047	A	A	25444047	1	1	96	0	1	0	0	0	0	0	0	0	15476	551	19	3		3	STXBP6	14	25444047	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	1559123	25444047	81905493	1050	96726											
PRKD1	5587	broad.mit.edu	37	chr14	30194637	30194637	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacatcttctcttggagctGagtttgagatatgcttttta	8	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30194637	A	A	30194637	1	1	96	0	1	0	0	0	0	0	0	0	12624	1305	45	4		4	PRKD1	14	30194637	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4750590	30194637	77154903	1051	96727											
NPAS3	64067	broad.mit.edu	37	chr14	33684503	33684503	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcctgcagccattaccAgccagctcgacaaggcatcc	7	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33684503	T	T	33684503	3	4	96	1	0	0	0	0	1	0	0	0	10659	188	7	5	266	5	NPAS3	14	33684503	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	3489866	33684503	73665037	1052	96728											
RALGAPA1	253959	broad.mit.edu	37	chr14	36018448	36018448	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctctcctcatagctgatttCctttggttaaggataaactt	6	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36018448	T	T	36018448	1	4	96	0	1	0	0	0	0	0	0	0	13121	870	30	4		4	RALGAPA1	14	36018448	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2333945	36018448	71331092	1053	96729											
RALGAPA1	253959	broad.mit.edu	37	chr14	36154336	36154336	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctgcctggactacttcCtcttcttgtcatagtctaaa	7	12	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36154336	A	A	36154336	4	1	96	1	0	0	0	0	0	1	0	0	13121	690	24	2	3776	2	RALGAPA1	14	36154336	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	135888	36154336	71195204	1054	96730											
LRFN5	145581	broad.mit.edu	37	chr14	42360763	42360763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacacaaggtcaccaagGttagcaatgtttattcccaa	8	10	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42360763	T	T	42360763	3	4	96	1	0	0	0	0	1	0	0	0	9028	1261	44	3	1702	3	LRFN5	14	42360763	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	6206427	42360763	64988777	1055	96731											
LRFN5	145581	broad.mit.edu	37	chr14	42368193	42368193	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttattacctataacttacttCaacacttaaatgggtataca	3	8	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42368193	T	T	42368193	1	4	96	0	1	0	0	0	0	0	0	0	9028	841	29	4		4	LRFN5	14	42368193	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	7430	42368193	64981347	1056	96732											
SDCCAG1	9147	broad.mit.edu	37	chr14	50304947	50304947	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaacaaaacggacatgcCtctatcatatcttaaataaa	5	8	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50304947	T	T	50304947	1	4	96	0	1	0	0	0	0	0	0	0	14070	696	24	4		4	SDCCAG1	14	50304947	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	7936754	50304947	57044593	1057	96733											
L2HGDH	79944	broad.mit.edu	37	chr14	50713738	50713738	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtacattcttgttgctgaCatgaagattacagtgcatac	8	7	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50713738	G	G	50713738	1	3	96	0	1	0	0	0	0	0	0	0	8662	493	17	4		4	L2HGDH	14	50713738	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	408791	50713738	56635802	1058	96734											
FERMT2	10979	broad.mit.edu	37	chr14	53385810	53385810	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgtacatcacataactcGtattttaagaagaatttatg	5	6	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53385810	A	A	53385810	1	1	96	0	1	0	0	0	0	0	0	0	5875	1160	40	4		4	FERMT2	14	53385810	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2672072	53385810	53963730	1059	96735											
ARID4A	5926	broad.mit.edu	37	chr14	58825772	58825772	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atctgtctcactgttgttttCgtttggtgaatacatttcaa	7	7	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58825772	T	T	58825772	1	4	96	0	1	0	0	0	0	0	0	0	921	899	31	4		4	ARID4A	14	58825772	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5439962	58825772	48523768	1060	96736											
KCNH5	27133	broad.mit.edu	37	chr14	63246455	63246455	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagaacatacccgtttcctCagattgcaagtaagagtgag	10	8	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63246455	G	G	63246455	2	3	96	1	0	0	0	0	0	0	0	1	8105	813	29	4		4	KCNH5	14	63246455	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	4420683	63246455	44103085	1061	96737											
SYNE2	23224	broad.mit.edu	37	chr14	64465095	64465095	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccaccagaagtctttcatCgatgcaaacatgttagactt	6	10	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64465095	T	T	64465095	1	4	96	0	1	0	0	0	0	0	0	0	15565	899	31	4		4	SYNE2	14	64465095	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1218640	64465095	42884445	1062	96738											
FNTB	2342	broad.mit.edu	37	chr14	65415485	65415485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatttctgaaagagagtcaGtaaggcaggggaggggccca	15	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65415485	T	T	65415485	1	4	96	0	1	0	0	0	0	0	0	0	6036	1044	36	3		3	FNTB	14	65415485	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	950390	65415485	41934055	1063	96739											
ZFYVE26	23503	broad.mit.edu	37	chr14	68222716	68222716	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtagtagttcttcttctgTaaatgttggcaggcagcaat	11	6	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68222716	C	C	68222716	2	2	96	1	0	0	0	0	0	0	0	1	17794	1635	57	5		5	ZFYVE26	14	68222716	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	2807231	68222716	39126824	1064	96740											
RGS6	9628	broad.mit.edu	37	chr14	72921106	72921106	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggttggttaggacaaaaaaAagtgcccatattatcctgct	10	7	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72921106	C	C	72921106	1	2	96	0	1	0	0	0	0	0	0	0	13418	29	1	5		5	RGS6	14	72921106	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	4698390	72921106	34428434	1065	96741											
MLH3	27030	broad.mit.edu	37	chr14	75515236	75515236	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgcttctgaagagtagcatCaaataaactaaaaccattat	5	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75515236	T	T	75515236	3	4	96	1	0	0	0	0	1	0	0	0	9711	826	29	4	3286	4	MLH3	14	75515236	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2594130	75515236	31834304	1066	96742											
TMEM63C	57156	broad.mit.edu	37	chr14	77685276	77685276	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttgggggtgtccccacCgtgctgtgcctcaacatcgc	11	16	1	0	rs147741741	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77685276	A	A	77685276	2	1	96	1	0	0	0	0	0	0	0	1	16315	639	23	1		1	TMEM63C	14	77685276	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	2170040	77685276	29664264	1067	96743											
POMT2	29954	broad.mit.edu	37	chr14	77765710	77765710	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcacctatcattttaaccAcagacccagaaaatcatccg	3	15	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77765710	G	G	77765710	1	3	96	0	1	0	0	0	0	0	0	0	12341	174	6	5		5	POMT2	14	77765710	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	80434	77765710	29583830	1068	96744											
GALC	2581	broad.mit.edu	37	chr14	88419944	88419944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgttcccaactaaacaCcttccacaaaagtgctatta	4	12	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88419944	A	A	88419944	1	1	96	0	1	0	0	0	0	0	0	0	6263	522	18	3		3	GALC	14	88419944	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	10654234	88419944	18929596	1069	96745											
KCNK10	54207	broad.mit.edu	37	chr14	88792823	88792823	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagatgccgctccaagcGgttctgtctccctctgtgcc	10	14	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88792823	T	T	88792823	1	4	96	0	1	0	0	0	0	0	0	0	8129	1131	39	1		1	KCNK10	14	88792823	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	372879	88792823	18556717	1070	96746											
KCNK13	56659	broad.mit.edu	37	chr14	90650778	90650778	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagccatgtacacccccattGaaggctggagctactttgac	9	13	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90650778	A	A	90650778	3	1	96	1	0	0	0	0	1	0	0	0	8131	1291	45	4	664	4	KCNK13	14	90650778	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1857955	90650778	16698762	1071	96747											
TRIP11	9321	broad.mit.edu	37	chr14	92484063	92484063	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttacatatttcactttgaTcagagttatctgttccttgt	6	7	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92484063	A	A	92484063	3	1	96	1	0	0	0	0	1	0	0	0	16680	1435	50	5	5387	5	TRIP11	14	92484063	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	1833285	92484063	14865477	1072	96748											
SERPINA5	5104	broad.mit.edu	37	chr14	95057023	95057023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgcattatgaatccaaGgggtgaggctcagtgtgcca	13	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95057023	T	T	95057023	1	4	96	0	1	0	0	0	0	0	0	0	14205	1015	35	2		2	SERPINA5	14	95057023	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2572960	95057023	12292517	1073	96749											
CLMN	79789	broad.mit.edu	37	chr14	95670781	95670781	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcgataggaacttctttaTctgaatcgaaaatatcttcc	5	8	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95670781	A	A	95670781	3	1	96	1	0	0	0	0	1	0	0	0	3574	1435	50	5	2123	5	CLMN	14	95670781	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	613758	95670781	11678759	1074	96750											
BDKRB2	624	broad.mit.edu	37	chr14	96703586	96703586	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaccctggagaactccctgGaaagctcaactctcatgccc	7	16	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96703586	C	C	96703586	1	2	96	0	1	0	0	0	0	0	0	0	1398	1189	41	4		4	BDKRB2	14	96703586	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1032805	96703586	10645954	1075	96751											
DYNC1H1	1778	broad.mit.edu	37	chr14	102486120	102486120	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctatcttcttaaatatttCagggtctaggttctttaatg	7	6	5	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102486120	T	T	102486120	1	4	96	0	1	0	0	0	0	0	0	0	4881	841	29	4		4	DYNC1H1	14	102486120	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5782534	102486120	4863420	1076	96752											
CKB	1152	broad.mit.edu	37	chr14	103986586	103986586	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggttggatgggcaggtgagGatgtagcccaggtgagggtt	20	4	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103986586	A	A	103986586	2	1	96	1	0	0	0	0	0	0	0	1	3477	1164	41	4		4	CKB	14	103986586	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1500466	103986586	3362954	1077	96753											
CYFIP1	23191	broad.mit.edu	37	chr15	22960689	22960689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagttgtttttccttacGtgagaggtggaaaatggagt	13	3	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22960689	T	T	22960689	1	4	96	0	1	0	0	0	0	0	0	0	4170	1160	40	3		3	CYFIP1	15	22960689	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08		22960689	79570703	1078	96754											
MAGEL2	54551	broad.mit.edu	37	chr15	23890035	23890035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagccactcaggatcctgGaggtgctagggccctcccaa	11	16	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23890035	T	T	23890035	3	4	96	1	0	0	0	0	1	0	0	0	9281	1174	41	3	898	3	MAGEL2	15	23890035	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	929346	23890035	78641357	1079	96755											
NDN	4692	broad.mit.edu	37	chr15	23931360	23931360	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccacccttccacagccctGgtgagggtcagaaaccattc	8	17	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23931360	A	A	23931360	1	1	96	0	1	0	0	0	0	0	0	0	10342	1363	47	4		4	NDN	15	23931360	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	41325	23931360	78600032	1080	96756											
NDN	4692	broad.mit.edu	37	chr15	23932116	23932116	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggcccggctgggccgcgctCggggcctggtgggcgcggcc	22	15	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23932116	A	A	23932116	2	1	96	1	0	0	0	0	0	0	0	1	10342	871	31	3		3	NDN	15	23932116	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	756	23932116	78599276	1081	96757											
C15orf2	23742	broad.mit.edu	37	chr15	24921181	24921181	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttccgccggaacgcccGtcgcaggccttcagcagcca	11	18	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24921181	T	T	24921181	3	4	96	1	0	0	0	0	1	0	0	0	1797	1145	40	3	169	3	C15orf2	15	24921181	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	989065	24921181	77610211	1082	96758											
HERC2	8924	broad.mit.edu	37	chr15	28451171	28451171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcacaatttacacaaaccCaaaataaggttaaacttcaa	2	9	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28451171	A	A	28451171	1	1	96	0	1	0	0	0	0	0	0	0	7125	609	21	2		2	HERC2	15	28451171	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3529990	28451171	74080221	1083	96759											
APBA2	321	broad.mit.edu	37	chr15	29386560	29386560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagtgttgtttgcttgtGtttccgtggcttgtcctggg	15	7	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29386560	T	T	29386560	1	4	96	0	1	0	0	0	0	0	0	0	759	1392	48	3		3	APBA2	15	29386560	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	935389	29386560	73144832	1084	96760											
TJP1	7082	broad.mit.edu	37	chr15	30020222	30020222	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagcgtctcgtggttcactCtctattcattatgtcaggac	8	12	5	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30020222	A	A	30020222	3	1	96	1	0	0	0	0	1	0	0	0	16052	927	32	3	3279	3	TJP1	15	30020222	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	633662	30020222	72511170	1085	96761											
TRPM1	4308	broad.mit.edu	37	chr15	31320613	31320613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgagtgctggagtgagcCaggcgccggggatacaggga	18	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31320613	A	A	31320613	3	1	96	1	0	0	0	0	1	0	0	0	16710	595	21	2	1678	2	TRPM1	15	31320613	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1300391	31320613	71210779	1086	96762											
ACTC1	70	broad.mit.edu	37	chr15	35084612	35084612	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagacacacacactcaccagTggtgacaaaggagtagccac	10	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35084612	A	A	35084612	3	1	96	1	0	0	0	0	1	0	0	0	195	1696	59	5	536	5	ACTC1	15	35084612	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	3763999	35084612	67446780	1087	96763											
TMEM87A	25963	broad.mit.edu	37	chr15	42525510	42525510	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actccaaggcgtggcctaaaGaggaagcaaggagatatttg	13	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42525510	C	C	42525510	1	2	96	0	1	0	0	0	0	0	0	0	16333	957	33	4		4	TMEM87A	15	42525510	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	7440898	42525510	60005882	1088	96764											
MAP1A	4130	broad.mit.edu	37	chr15	43820739	43820739	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccaggttccctctgaggaTtgtgcagccaatggcccaac	10	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43820739	A	A	43820739	3	1	96	1	0	0	0	0	1	0	0	0	9319	1490	52	5	7070	5	MAP1A	15	43820739	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	1295229	43820739	58710653	1089	96765											
SPG11	80208	broad.mit.edu	37	chr15	44862614	44862614	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagtaggtagtggtatccaGatgggcagaaccccctacga	12	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44862614	C	C	44862614	1	2	96	0	1	0	0	0	0	0	0	0	15159	957	33	4		4	SPG11	15	44862614	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1041875	44862614	57668778	1090	96766											
SEMA6D	80031	broad.mit.edu	37	chr15	48052237	48052237	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatttgcatctgagtttatCagtaatcatttcctagtgtt	7	6	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48052237	A	A	48052237	1	1	96	0	1	0	0	0	0	0	0	0	14155	841	29	3		3	SEMA6D	15	48052237	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3189623	48052237	54479155	1091	96767											
MYEF2	50804	broad.mit.edu	37	chr15	48444134	48444134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttccagaccaccaaaccCtattcctatggaataaagat	5	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48444134	A	A	48444134	3	1	96	1	0	0	0	0	1	0	0	0	10118	681	24	2	682	2	MYEF2	15	48444134	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	391897	48444134	54087258	1092	96768											
SPPL2A	84888	broad.mit.edu	37	chr15	51018680	51018680	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatggccagttacactgattGaaaatgggctgcagactgct	11	8	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51018680	C	C	51018680	1	2	96	0	1	0	0	0	0	0	0	0	15206	1305	45	4		4	SPPL2A	15	51018680	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2574546	51018680	51512712	1093	96769											
MYO5A	4644	broad.mit.edu	37	chr15	52664516	52664516	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgcgggccagccagccCcggactcgcttctgaatgat	13	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52664516	A	A	52664516	2	1	96	1	0	0	0	0	0	0	0	1	10172	610	22	2		2	MYO5A	15	52664516	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1645836	52664516	49866876	1094	96770											
UNC13C	440279	broad.mit.edu	37	chr15	54592569	54592569	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatccatttatcaagctatGacgtaagtactacagaacat	6	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54592569	A	A	54592569	3	1	96	1	0	0	0	0	1	0	0	0	17112	1290	45	4	4308	4	UNC13C	15	54592569	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1928053	54592569	47938823	1095	96771											
UNC13C	440279	broad.mit.edu	37	chr15	54919052	54919052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaaggaaaatcgaccagGggcttatgaacttcatctct	10	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54919052	T	T	54919052	3	4	96	1	0	0	0	0	1	0	0	0	17112	1232	43	2	6508	2	UNC13C	15	54919052	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	326483	54919052	47612340	1096	96772											
NEDD4	4734	broad.mit.edu	37	chr15	56142862	56142862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgggtcacctgctggcCtgaatcactggtggaggctt	15	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56142862	A	A	56142862	3	1	96	1	0	0	0	0	1	0	0	0	10405	681	24	2	1541	2	NEDD4	15	56142862	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1223810	56142862	46388530	1097	96773											
MAP2K1	5604	broad.mit.edu	37	chr15	66727454	66727454	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcctttcttacccagaAgcagaaggtgggagaactga	13	8	1	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66727454	C	C	66727454	3	2	96	1	0	0	0	0	1	0	0	0	9328	72	3	5	176	5	MAP2K1	15	66727454	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	10584592	66727454	35803938	1098	96774											
ITGA11	22801	broad.mit.edu	37	chr15	68643859	68643859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccttgggcaacccaaCaggtgccaggacctcaaacc	9	16	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68643859	A	A	68643859	1	1	96	0	1	0	0	0	0	0	0	0	7944	493	17	3		3	ITGA11	15	68643859	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1916405	68643859	33887533	1099	96775											
C15orf59	388135	broad.mit.edu	37	chr15	74032524	74032524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccacctcctgctcacCgtccccctcctcatcgtcac	3	24	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74032524	A	A	74032524	3	1	96	1	0	0	0	0	1	0	0	0	1820	652	23	1	269	1	C15orf59	15	74032524	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	5388665	74032524	28498868	1100	96776											
LINGO1	84894	broad.mit.edu	37	chr15	77907657	77907657	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaggttgcatttctccaGcgtcagctgctccaggctgt	12	12	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77907657	A	A	77907657	2	1	96	1	0	0	0	0	0	0	0	1	8887	962	34	4		4	LINGO1	15	77907657	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	3875133	77907657	24623735	1101	96777											
PSMA4	5685	broad.mit.edu	37	chr15	78841086	78841093	+	Intron	DEL	TGCCTGCC	-	-													ttaagcttctctgctaagtaTgcctgcctgcctgcaataca							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78841093	-	-	78841086	6	5	96	0	1	1	0	1	0	0	0	0	12775	1479	51	0		0	PSMA4	15	78841086	Intron	DEL	TGCCTGCC	TCGA-38-4625-01A-01D-1553-08	933429	78841086	23690306	1102	96778											
MORF4L1	10933	broad.mit.edu	37	chr15	79177441	79177441	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaggtaaatgcatgttttGaaattttctctaggaaatca	7	5	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79177441	C	C	79177441	1	2	96	0	1	0	0	0	0	0	0	0	9800	1305	45	4		4	MORF4L1	15	79177441	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	336355	79177441	23353951	1103	96779											
HDGFRP3	50810	broad.mit.edu	37	chr15	83820030	83820030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgttgcccgcatctccaccCtcagagctgcttttgttttc	7	15	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83820030	A	A	83820030	3	1	96	1	0	0	0	0	1	0	0	0	7088	680	24	2	76	2	HDGFRP3	15	83820030	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	4642589	83820030	18711362	1104	96780											
PDE8A	5151	broad.mit.edu	37	chr15	85657227	85657227	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagtttggtgctaaagatGatgatccccatgccaatgac	9	10	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85657227	A	A	85657227	3	1	96	1	0	0	0	0	1	0	0	0	11747	1290	45	4	1363	4	PDE8A	15	85657227	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1837197	85657227	16874165	1105	96781											
AKAP13	11214	broad.mit.edu	37	chr15	86261450	86261450	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgtccagcatttttaagcAgtaatttgttggactatgaa	8	5	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86261450	T	T	86261450	1	4	96	0	1	0	0	0	0	0	0	0	449	203	7	5		5	AKAP13	15	86261450	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	604223	86261450	16269942	1106	96782											
AGBL1	123624	broad.mit.edu	37	chr15	86807844	86807844	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcccaaggatgagtgcctCcttttctaattccactagga	8	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86807844	T	T	86807844	3	4	96	1	0	0	0	0	1	0	0	0	375	855	30	4	1338	4	AGBL1	15	86807844	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	546394	86807844	15723548	1107	96783											
NTRK3	4916	broad.mit.edu	37	chr15	88476242	88476242	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagacaatccttgcttaCctgaggaacttattcaggtc	10	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88476242	A	A	88476242	5	1	96	1	0	0	0	0	0	0	1	0	10803	521	18	3	649	3	NTRK3	15	88476242	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	1668398	88476242	14055150	1108	96784											
NTRK3	4916	broad.mit.edu	37	chr15	88576096	88576096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtacttacacgtgtccGgcttgtggcagttgtgtccc	11	13	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88576096	T	T	88576096	3	4	96	1	0	0	0	0	1	0	0	0	10803	1116	39	1	1232	1	NTRK3	15	88576096	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	99854	88576096	13955296	1109	96785											
KIF7	374654	broad.mit.edu	37	chr15	90177050	90177050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccgctcgagctcctgcagtCgcttctcactctgggccgac	10	17	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90177050	T	T	90177050	3	4	96	1	0	0	0	0	1	0	0	0	8379	884	31	4	1604	4	KIF7	15	90177050	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1600954	90177050	12354342	1110	96786											
ANPEP	290	broad.mit.edu	37	chr15	90340611	90340611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcacctccatgtccctcCggctcgctctttcacctgcg	6	20	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90340611	A	A	90340611	1	1	96	0	1	0	0	0	0	0	0	0	710	667	23	1		1	ANPEP	15	90340611	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	163561	90340611	12190781	1111	96787											
LRRK1	79705	broad.mit.edu	37	chr15	101564892	101564892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtccagaacttttccacGgttgttttttcagacccccg	8	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101564892	T	T	101564892	1	4	96	0	1	0	0	0	0	0	0	0	9119	1131	39	1		1	LRRK1	15	101564892	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	11224281	101564892	966500	1112	96788											
MSLN	10232	broad.mit.edu	37	chr16	816888	816888	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaccgtgtccccagggcGgtcaggccccaggacctgga	13	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	816888	T	T	816888	2	4	96	1	0	0	0	0	0	0	0	1	9975	1103	39	1		1	MSLN	16	816888	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08		816888	89537865	1113	96789											
TBL3	10607	broad.mit.edu	37	chr16	2026981	2026981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgactccatagccactgGggtgggggtgtggccaagcc	17	10	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2026981	T	T	2026981	1	4	96	0	1	0	0	0	0	0	0	0	15765	1247	43	2		2	TBL3	16	2026981	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1210093	2026981	88327772	1114	96790											
NTHL1	4913	broad.mit.edu	37	chr16	2094511	2094511	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctggggggggcttcaggggGaccccccgagcctgagatgc	18	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2094511	A	A	2094511	1	1	96	0	1	0	0	0	0	0	0	0	10793	1189	41	4		4	NTHL1	16	2094511	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	67530	2094511	88260242	1115	96791											
TSC2	7249	broad.mit.edu	37	chr16	2105535	2105535	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttcagtaagaaaagaattGagatcctgttctgataatgg	11	4	2	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2105535	C	C	2105535	1	2	96	0	1	0	0	0	0	0	0	0	16731	1305	45	4		4	TSC2	16	2105535	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	11024	2105535	88249218	1116	96792											
TSC2	7249	broad.mit.edu	37	chr16	2112113	2112114	+	Intron	INS	-	G	G													tcagaagccaagggccaggtINSgggcgcctgctttccaggtt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2112114	G	G	2112113	6	5	96	0	1	1	1	0	0	0	0	0	16731	1711	59	0		0	TSC2	16	2112113	Intron	INS	-	TCGA-38-4625-01A-01D-1553-08	6578	2112113	88242640	1117	96793											
TSC2	7249	broad.mit.edu	37	chr16	2130310	2130310	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttcctgtgcaggagaagaCgaacctggcggcctatgtgc	15	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2130310	T	T	2130310	3	4	96	1	0	0	0	0	1	0	0	0	16731	536	19	4	3656	4	TSC2	16	2130310	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	18197	2130310	88224443	1118	96794											
PKD1	5310	broad.mit.edu	37	chr16	2158369	2158369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccgtgtgtctgaccacaCgcggtatgagccaccctcaa	10	15	2	2	rs148069029	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2158369	A	A	2158369	3	1	96	1	0	0	0	0	1	0	0	0	12058	536	19	3	6240	3	PKD1	16	2158369	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	28059	2158369	88196384	1119	96795											
E4F1	1877	broad.mit.edu	37	chr16	2285496	2285496	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtgtcatcagaggacatcGagatcctggagcatgcaggc	14	9	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2285496	A	A	2285496	3	1	96	1	0	0	0	0	1	0	0	0	4914	1059	37	4	2332	4	E4F1	16	2285496	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	127127	2285496	88069257	1120	96796											
ABCA3	21	broad.mit.edu	37	chr16	2328071	2328071	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcacactcctccatgCtgtggagagggcgggacctc	14	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2328071	A	A	2328071	5	1	96	1	0	0	0	0	0	0	1	0	33	811	28	3	408	3	ABCA3	16	2328071	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	42575	2328071	88026682	1121	96797											
IL32	9235	broad.mit.edu	37	chr16	3117726	3117726	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacccacaggctccctcacCccttaccgtgggcaaatgct	9	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3117726	T	T	3117726	1	4	96	0	1	0	0	0	0	0	0	0	7762	638	22	4		4	IL32	16	3117726	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	789655	3117726	87237027	1122	96798											
A2BP1	54715	broad.mit.edu	37	chr16	7637118	7637118	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtttcaagcacattaacCataaaacataaaatgtgtat	4	7	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7637118	T	T	7637118	1	4	96	0	1	0	0	0	0	0	0	0	3	609	21	4		4	A2BP1	16	7637118	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	4519392	7637118	82717635	1123	96799											
MKL2	57496	broad.mit.edu	37	chr16	14345626	14345626	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagccctttacagaaaaAgtttgctgacccctgtccta	7	13	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14345626	G	G	14345626	1	3	96	0	1	0	0	0	0	0	0	0	9695	87	3	5		5	MKL2	16	14345626	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	6708508	14345626	76009127	1124	96800											
PDILT	204474	broad.mit.edu	37	chr16	20381072	20381072	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccagtggagaaaaactgctGaaaggctgtggactaagggg	16	6	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20381072	A	A	20381072	1	1	96	0	1	0	0	0	0	0	0	0	11768	1305	45	4		4	PDILT	16	20381072	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6035446	20381072	69973681	1125	96801											
ACSM5	54988	broad.mit.edu	37	chr16	20448754	20448754	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagcacccagcagaacaagCaggaaggctcagattgtcct	10	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20448754	G	G	20448754	1	3	96	0	1	0	0	0	0	0	0	0	187	725	25	4		4	ACSM5	16	20448754	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	67682	20448754	69905999	1126	96802											
ACSM2A	123876	broad.mit.edu	37	chr16	20482618	20482618	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagacccaattatatattaAgtcaggtcaaccggggtccc	9	10	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20482618	C	C	20482618	1	2	96	0	1	0	0	0	0	0	0	0	183	87	3	5		5	ACSM2A	16	20482618	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	33864	20482618	69872135	1127	96803											
ZP2	7783	broad.mit.edu	37	chr16	21214691	21214691	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actccagacttatctgggctCcctttaaaccaaaacaagag	6	12	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21214691	G	G	21214691	1	3	96	0	1	0	0	0	0	0	0	0	18345	870	30	4		4	ZP2	16	21214691	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	732073	21214691	69140062	1128	96804											
HS3ST2	9956	broad.mit.edu	37	chr16	22926287	22926287	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcctgatgcccaggaccctcGagagccagatcacgctggag	13	14	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22926287	C	C	22926287	3	2	96	1	0	0	0	0	1	0	0	0	7431	1059	37	4	514	4	HS3ST2	16	22926287	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1711596	22926287	67428466	1129	96805											
PLK1	5347	broad.mit.edu	37	chr16	23695377	23695377	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagcagcctggaccccAgcaaccggaagcccctcaca	8	20	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23695377	T	T	23695377	3	4	96	1	0	0	0	0	1	0	0	0	12189	188	7	5	1021	5	PLK1	16	23695377	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	769090	23695377	66659376	1130	96806											
CHP2	63928	broad.mit.edu	37	chr16	23768979	23768979	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcccccatggacgcatGgacgcagggcgacaataaac	11	13	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23768979	T	T	23768979	1	4	96	0	1	0	0	0	0	0	0	0	3398	1363	47	2		2	CHP2	16	23768979	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	73602	23768979	66585774	1131	96807											
IL4R	3566	broad.mit.edu	37	chr16	27375238	27375238	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcctggaaggcagccagGctggcagatttccaaaagac	11	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27375238	T	T	27375238	1	4	96	0	1	0	0	0	0	0	0	0	7768	1218	42	3		3	IL4R	16	27375238	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	3606259	27375238	62979515	1132	96808											
KIAA0556	23247	broad.mit.edu	37	chr16	27640206	27640206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttaatcaaaattaattagGggcagggtgcagtggctcac	12	6	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27640206	T	T	27640206	1	4	96	0	1	0	0	0	0	0	0	0	8253	1247	43	2		2	KIAA0556	16	27640206	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	264968	27640206	62714547	1133	96809											
ATP2A1	487	broad.mit.edu	37	chr16	28912103	28912103	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatcgcgcctacacgggcCgagagttcgacgacctgccc	12	17	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28912103	A	A	28912103	2	1	96	1	0	0	0	0	0	0	0	1	1140	644	23	1		1	ATP2A1	16	28912103	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	1271897	28912103	61442650	1134	96810											
MVP	9961	broad.mit.edu	37	chr16	29857194	29857194	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcctccaggcatgaggctCagagactggagcaggaagcc	13	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29857194	G	G	29857194	3	3	96	1	0	0	0	0	1	0	0	0	10090	827	29	4	2074	4	MVP	16	29857194	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	945091	29857194	60497559	1135	96811											
HIRIP3	8479	broad.mit.edu	37	chr16	30006374	30006374	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcgcagtgaatgcttcttGagtgaaccaacgatgcagaa	11	8	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30006374	C	C	30006374	1	2	96	0	1	0	0	0	0	0	0	0	7188	1305	45	4		4	HIRIP3	16	30006374	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	149180	30006374	60348379	1136	96812											
BOLA2	552900	broad.mit.edu	37	chr16	30104165	30104165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccggagcaacagtctcaCcacaaggcactggggttggg	13	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30104165	A	A	30104165	1	1	96	0	1	0	0	0	0	0	0	0	1492	522	18	3		3	BOLA2	16	30104165	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	97791	30104165	60250588	1137	96813											
MAPK3	5595	broad.mit.edu	37	chr16	30129407	30129407	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggggcccggtaccagcgCgtagccacatactccgtcag	12	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30129407	A	A	30129407	2	1	96	1	0	0	0	0	0	0	0	1	9371	755	27	3		3	MAPK3	16	30129407	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	25242	30129407	60225346	1138	96814											
ZNF768	79724	broad.mit.edu	37	chr16	30537540	30537540	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccagtccccgccggcccctCcttcgagtcccaggtgtccc	9	22	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30537540	G	G	30537540	1	3	96	0	1	0	0	0	0	0	0	0	18270	870	30	4		4	ZNF768	16	30537540	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	408133	30537540	59817213	1139	96815											
FBXL19	54620	broad.mit.edu	37	chr16	30937210	30937210	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaagttcggggggccCgggcgcatgaagcagtcgtg	18	8	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30937210	T	T	30937210	2	4	96	1	0	0	0	0	0	0	0	1	5772	639	23	4		4	FBXL19	16	30937210	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	399670	30937210	59417543	1140	96816											
VKORC1	79001	broad.mit.edu	37	chr16	31105880	31105880	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccactcccgtgcacacctGgaggagaagacgcgcgaaca	11	15	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31105880	T	T	31105880	2	4	96	1	0	0	0	0	0	0	0	1	17299	1335	47	2		2	VKORC1	16	31105880	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	168670	31105880	59248873	1141	96817											
ITGAM	3684	broad.mit.edu	37	chr16	31332582	31332582	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggatagcaggctccaagctCtctcccaggctccagtattt	9	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31332582	T	T	31332582	2	4	96	1	0	0	0	0	0	0	0	1	7957	900	32	4		4	ITGAM	16	31332582	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	226702	31332582	59022171	1142	96818											
TGFB1I1	7041	broad.mit.edu	37	chr16	31485912	31485912	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggccaactcagccacCggtggtgagctccacaaatg	11	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31485912	T	T	31485912	3	4	96	1	0	0	0	0	1	0	0	0	15940	652	23	4	574	4	TGFB1I1	16	31485912	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	153330	31485912	58868841	1143	96819											
GPT2	84706	broad.mit.edu	37	chr16	46940822	46940822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcctacatcaccaggaggGatggcggtgtgcctgcggac	15	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46940822	T	T	46940822	3	4	96	1	0	0	0	0	1	0	0	0	6804	1174	41	3	525	3	GPT2	16	46940822	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	15454910	46940822	43413931	1144	96820											
ITFG1	81533	broad.mit.edu	37	chr16	47252779	47252779	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacaatgtatctggtcttacCtgatccatttttcagatacc	6	10	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47252779	G	G	47252779	3	3	96	1	0	0	0	0	1	0	0	0	7939	695	24	4	405	4	ITFG1	16	47252779	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	311957	47252779	43101974	1145	96821											
ABCC12	94160	broad.mit.edu	37	chr16	48177929	48177929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgtgagccaggaaaatGtggcgaaggagagtagcccg	17	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48177929	T	T	48177929	3	4	96	1	0	0	0	0	1	0	0	0	52	1377	48	3	4024	3	ABCC12	16	48177929	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	925150	48177929	42176824	1146	96822											
CHD9	80205	broad.mit.edu	37	chr16	53319682	53319682	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtcagttctcagttcattGatttccacttacagctttat	5	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53319682	C	C	53319682	1	2	96	0	1	0	0	0	0	0	0	0	3363	1305	45	4		4	CHD9	16	53319682	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	5141753	53319682	37035071	1147	96823											
FHOD1	29109	broad.mit.edu	37	chr16	67270784	67270784	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtctgtggggcggggcctGagggggttggggtcagggcc	23	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67270784	C	C	67270784	1	2	96	0	1	0	0	0	0	0	0	0	5939	1305	45	4		4	FHOD1	16	67270784	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	13951102	67270784	23083969	1148	96824											
NFATC3	4775	broad.mit.edu	37	chr16	68215480	68215480	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatatttaagacactgaatAgaaaattgaataatgctgct	6	4	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68215480	T	T	68215480	1	4	96	0	1	0	0	0	0	0	0	0	10459	435	15	5		5	NFATC3	16	68215480	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	944696	68215480	22139273	1149	96825											
CLEC18C	283971	broad.mit.edu	37	chr16	70070441	70070442	+	Intron	DNP	CC	AA	AA													ataagctcccagactatgtcCcaacacagccacatgacctt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70070442	AA	AA	70070441	1	1	96	0	1	0	0	0	0	0	0	0	3536	638	22	2		2	CLEC18C	16	70070441	Intron	DNP	CC	TCGA-38-4625-01A-01D-1553-08	1854961	70070441	20284312	1150	96826											
FTSJD1	55783	broad.mit.edu	37	chr16	71318668	71318668	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttcttgttccgcctttcCcatgcactcaaatagacgaa	5	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71318668	A	A	71318668	4	1	96	1	0	0	0	0	0	1	0	0	6150	632	22	2	1160	2	FTSJD1	16	71318668	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1248227	71318668	19036085	1151	96827											
PMFBP1	83449	broad.mit.edu	37	chr16	72188044	72188044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcgtctgctttctagtGggcttggtctgatttctgca	11	10	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72188044	T	T	72188044	1	4	96	0	1	0	0	0	0	0	0	0	12229	1363	47	2		2	PMFBP1	16	72188044	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	869376	72188044	18166709	1152	96828											
FBXO31	79791	broad.mit.edu	37	chr16	87367539	87367539	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattcctggagctcacgccCacgggcagcacgaacggctg	12	15	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87367539	A	A	87367539	2	1	96	1	0	0	0	0	0	0	0	1	5798	581	21	2		2	FBXO31	16	87367539	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	15179495	87367539	2987214	1153	96829											
FANCA	2175	broad.mit.edu	37	chr16	89882414	89882414	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctacggagagaagtcggttCgaaaccatcacagcacaatt	10	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89882414	T	T	89882414	1	4	96	0	1	0	0	0	0	0	0	0	5719	899	31	4		4	FANCA	16	89882414	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2514875	89882414	472339	1154	96830											
P2RX1	5023	broad.mit.edu	37	chr17	3807020	3807020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggggtgggccgagcctcCgggacccgcctgcagccctg	17	16	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3807020	A	A	3807020	1	1	96	0	1	0	0	0	0	0	0	0	11433	667	23	1		1	P2RX1	17	3807020	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08		3807020	77388190	1155	96831											
NEURL4	84461	broad.mit.edu	37	chr17	7226812	7226813	+	Missense_Mutation	DNP	CC	AA	AA													aggaagcccaacctcagcatCcatgtgtcatagtcaatgtc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7226813	AA	AA	7226812	3	1	96	1	0	0	0	0	1	0	0	0	10442	856	30	3	2343	3	NEURL4	17	7226812	Missense_Mutation	DNP	CC	TCGA-38-4625-01A-01D-1553-08	3419792	7226812	73968398	1156	96832											
TP53	7157	broad.mit.edu	37	chr17	7577120	7577120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggacaggcacaaacaCgcacctcaaagctgttccgt	8	15	1	0	rs28934576	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577120	A	A	7577120	3	1	96	1	0	0	0	0	1	0	0	0	16505	536	19	3	468	3	TP53	17	7577120	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	350308	7577120	73618090	1157	96833											
DNAH2	146754	broad.mit.edu	37	chr17	7667583	7667583	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaagtacgaggtgccagtcGaggacagtgtgagttccttt	13	7	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7667583	A	A	7667583	3	1	96	1	0	0	0	0	1	0	0	0	4642	1059	37	4	3402	4	DNAH2	17	7667583	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	90463	7667583	73527627	1158	96834											
ALOX12B	242	broad.mit.edu	37	chr17	7983194	7983194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcggcggatcaggccggGgttgacgccgttgaggtact	18	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7983194	T	T	7983194	3	4	96	1	0	0	0	0	1	0	0	0	537	1232	43	2	1321	2	ALOX12B	17	7983194	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	315611	7983194	73212016	1159	96835											
PIK3R5	23533	broad.mit.edu	37	chr17	8808353	8808353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacatttcctggccgcagCgtgtcccaggacaaggtcag	11	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8808353	A	A	8808353	1	1	96	0	1	0	0	0	0	0	0	0	12017	783	27	3		3	PIK3R5	17	8808353	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	825159	8808353	72386857	1160	96836											
MYH4	4622	broad.mit.edu	37	chr17	10366581	10366581	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgaaaatttcacacaacaGaaataagtacaagattttct	4	6	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10366581	C	C	10366581	1	2	96	0	1	0	0	0	0	0	0	0	10131	957	33	4		4	MYH4	17	10366581	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1558228	10366581	70828629	1161	96837											
MYH1	4619	broad.mit.edu	37	chr17	10408448	10408448	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaattaaaacacctaagatGatgaggttaagtaaagaatt	8	3	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10408448	T	T	10408448	1	4	96	0	1	0	0	0	0	0	0	0	10123	1305	45	3		3	MYH1	17	10408448	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	41867	10408448	70786762	1162	96838											
MYH3	4621	broad.mit.edu	37	chr17	10545707	10545707	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggaacaaatggagggaaatCacatggacacaaagcactcc	10	9	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10545707	A	A	10545707	1	1	96	0	1	0	0	0	0	0	0	0	10130	841	29	3		3	MYH3	17	10545707	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	137259	10545707	70649503	1163	96839											
MAP2K4	6416	broad.mit.edu	37	chr17	12043409	12043409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactagctaaattctcatGgaaaattttggtcttaacat	5	6	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12043409	T	T	12043409	1	4	96	0	1	0	0	0	0	0	0	0	9331	1363	47	2		2	MAP2K4	17	12043409	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1497702	12043409	69151801	1164	96840											
MYOCD	93649	broad.mit.edu	37	chr17	12666814	12666814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatctccctgggaaaccatGgagtggctggacctcactcc	11	13	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12666814	T	T	12666814	3	4	96	1	0	0	0	0	1	0	0	0	10181	1348	47	2	2880	2	MYOCD	17	12666814	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	623405	12666814	68528396	1165	96841											
HS3ST3A1	9955	broad.mit.edu	37	chr17	13399534	13399534	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatccatcccagccaaagtCgtgcccggtcatctggtaga	9	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13399534	T	T	13399534	3	4	96	1	0	0	0	0	1	0	0	0	7432	884	31	4	23	4	HS3ST3A1	17	13399534	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	732720	13399534	67795676	1166	96842											
FAM18B2	201158	broad.mit.edu	37	chr17	15410343	15410343	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagggttcctgctttcacaGaattattccagagtttatgt	8	7	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15410343	A	A	15410343	1	1	96	0	1	0	0	0	0	0	0	0	5567	957	33	4		4	FAM18B2	17	15410343	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2010809	15410343	65784867	1167	96843											
TOP3A	7156	broad.mit.edu	37	chr17	18194199	18194199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatacacatccagatagtttCgggccagaatcatgaggcca	10	10	1	3	rs144590444		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18194199	T	T	18194199	3	4	96	1	0	0	0	0	1	0	0	0	16491	884	31	4	1613	4	TOP3A	17	18194199	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2783856	18194199	63001011	1168	96844											
KSR1	8844	broad.mit.edu	37	chr17	25909923	25909923	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtattcccctgcacgccagcGgccggctgaccccccgtgcc	11	20	0	1	rs145050697	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25909923	A	A	25909923	3	1	96	1	0	0	0	0	1	0	0	0	8653	1116	39	4	367	4	KSR1	17	25909923	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	7715724	25909923	55285287	1169	96845											
SARM1	23098	broad.mit.edu	37	chr17	26691685	26691685	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacacctgctaggaaagaaGaaggggtctgttctggcccc	12	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26691685	T	T	26691685	1	4	96	0	1	0	0	0	0	0	0	0	13954	957	33	3		3	SARM1	17	26691685	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	781762	26691685	54503525	1170	96846											
SUPT6H	6830	broad.mit.edu	37	chr17	27005004	27005004	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattttttagatttcatctaGaaaggttatcctttgttatt	5	4	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27005004	C	C	27005004	1	2	96	0	1	0	0	0	0	0	0	0	15518	957	33	4		4	SUPT6H	17	27005004	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	313319	27005004	54190206	1171	96847											
NEK8	284086	broad.mit.edu	37	chr17	27069038	27069038	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctctggaccaccctgatAttgcttctcctctgaatgct	6	15	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27069038	G	G	27069038	1	3	96	0	1	0	0	0	0	0	0	0	10425	464	16	5		5	NEK8	17	27069038	3'UTR	SNP	A	TCGA-38-4625-01A-01D-1553-08	64034	27069038	54126172	1172	96848											
CCDC55	84081	broad.mit.edu	37	chr17	28506276	28506276	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaactgcaagagagagctGaagaagaagaaagagaaaag	12	3	0	7			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28506276	A	A	28506276	3	1	96	1	0	0	0	0	1	0	0	0	2853	1291	45	4	487	4	CCDC55	17	28506276	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1437238	28506276	52688934	1173	96849											
TBC1D29	26083	broad.mit.edu	37	chr17	28883890	28883890	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttggccctgccctacaGgtcatgaaggagaagggcaa	12	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28883890	T	T	28883890	1	4	96	0	1	0	0	0	0	0	0	0	15737	1015	35	2		2	TBC1D29	17	28883890	5'Flank	SNP	G	TCGA-38-4625-01A-01D-1553-08	377614	28883890	52311320	1174	96850											
LRRC37B	114659	broad.mit.edu	37	chr17	30362756	30362756	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgagatttaattttcatAtaacattcaccctttataag	3	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30362756	G	G	30362756	1	3	96	0	1	0	0	0	0	0	0	0	9081	464	16	5		5	LRRC37B	17	30362756	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1478866	30362756	50832454	1175	96851											
ZNF830	91603	broad.mit.edu	37	chr17	33289356	33289356	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgacgaccctgaggtagaTgcaagagtacgaaaggttga	13	6	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33289356	C	C	33289356	2	2	96	1	0	0	0	0	0	0	0	1	18313	1461	51	5		5	ZNF830	17	33289356	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	2926600	33289356	47905854	1176	96852											
SLFN12	55106	broad.mit.edu	37	chr17	33738843	33738843	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatcagtgagccctttctGacagagtccatttcttcaca	7	11	4	4	rs112295255		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33738843	A	A	33738843	2	1	96	1	0	0	0	0	0	0	0	1	14848	1277	45	4		4	SLFN12	17	33738843	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	449487	33738843	47456367	1177	96853											
MYO19	80179	broad.mit.edu	37	chr17	34883764	34883764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccctcaggcggaggtctGgagcagcccacctggctcca	13	16	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34883764	A	A	34883764	1	1	96	0	1	0	0	0	0	0	0	0	10161	1363	47	4		4	MYO19	17	34883764	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1144921	34883764	46311446	1178	96854											
TBC1D3	729873	broad.mit.edu	37	chr17	36288039	36288039	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actctgagtgtccatccactCtttcagtcctgggaagggag	11	11	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36288039	T	T	36288039	1	4	96	0	1	0	0	0	0	0	0	0	15739	928	32	4		4	TBC1D3	17	36288039	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1404275	36288039	44907171	1179	96855											
CDK12	51755	broad.mit.edu	37	chr17	37686773	37686773	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttacttatattgatatttgTttatgttgcacagtgtgtgt	9	3	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37686773	C	C	37686773	1	2	96	0	1	0	0	0	0	0	0	0	3158	1740	60	5		5	CDK12	17	37686773	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1398734	37686773	43508437	1180	96856											
ERBB2	2064	broad.mit.edu	37	chr17	37866523	37866523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggtgggcaccctgcctgGtactgccctattgcccctgg	14	14	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37866523	T	T	37866523	1	4	96	0	1	0	0	0	0	0	0	0	5248	1276	44	3		3	ERBB2	17	37866523	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	179750	37866523	43328687	1181	96857											
KRT26	353288	broad.mit.edu	37	chr17	38926035	38926035	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagggactgaagttctatttCcagggtttgcagattgcgtt	13	6	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38926035	G	G	38926035	3	3	96	1	0	0	0	0	1	0	0	0	8534	864	30	4	482	4	KRT26	17	38926035	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1059512	38926035	42269175	1182	96858											
KRT37	8688	broad.mit.edu	37	chr17	39580153	39580154	+	Intron	DNP	CC	AA	AA													ccatactctaagctcccactCcatgtgtggtatttacgctc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	39580154	AA	AA	39580153	1	1	96	0	1	0	0	0	0	0	0	0	8545	870	30	3		3	KRT37	17	39580153	Intron	DNP	CC	TCGA-38-4625-01A-01D-1553-08	654118	39580153	41615057	1183	96859											
KRT38	8687	broad.mit.edu	37	chr17	39594727	39594727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatttgcagtgcagtgagAgtgaaggacacgtaccaagg	15	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39594727	G	G	39594727	1	3	96	0	1	0	0	0	0	0	0	0	8546	319	11	5		5	KRT38	17	39594727	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	14574	39594727	41600483	1184	96860											
JUP	3728	broad.mit.edu	37	chr17	39927835	39927835	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaatctgcctcctttcactCtgacctctctccaggaccca	4	18	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39927835	G	G	39927835	1	3	96	0	1	0	0	0	0	0	0	0	8042	928	32	4		4	JUP	17	39927835	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	333108	39927835	41267375	1185	96861											
WNK4	65266	broad.mit.edu	37	chr17	40932642	40932642	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccggagcgcagcgcacCcagcgagtccgtctgtcagg	14	15	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40932642	A	A	40932642	1	1	96	0	1	0	0	0	0	0	0	0	17507	638	22	2		2	WNK4	17	40932642	5'Flank	SNP	C	TCGA-38-4625-01A-01D-1553-08	1004807	40932642	40262568	1186	96862											
BRCA1	672	broad.mit.edu	37	chr17	41201263	41201263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaatctgcatacttaacCcaggccctctaccctacact	4	16	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41201263	A	A	41201263	1	1	96	0	1	0	0	0	0	0	0	0	1507	638	22	2		2	BRCA1	17	41201263	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	268621	41201263	39993947	1187	96863											
ARL4D	379	broad.mit.edu	37	chr17	41477680	41477680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcaagaggaagaaggcaGctcggggtggcaagaagaga	16	7	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41477680	T	T	41477680	3	4	96	1	0	0	0	0	1	0	0	0	942	971	34	3	582	3	ARL4D	17	41477680	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	276417	41477680	39717530	1188	96864											
MPP2	4355	broad.mit.edu	37	chr17	41958785	41958785	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgccctcgccctcccaTgcaccatacctggagagatg	9	17	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41958785	C	C	41958785	1	2	96	0	1	0	0	0	0	0	0	0	9828	1479	51	5		5	MPP2	17	41958785	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	481105	41958785	39236425	1189	96865											
EFTUD2	9343	broad.mit.edu	37	chr17	42959153	42959153	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctcccacaaacgaaccatCaatcactttccctcactacc	1	19	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42959153	T	T	42959153	1	4	96	0	1	0	0	0	0	0	0	0	5001	841	29	4		4	EFTUD2	17	42959153	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1000368	42959153	38236057	1190	96866											
MAPT	4137	broad.mit.edu	37	chr17	44049287	44049287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggctctgaaacctctgatGctaagagcactccaacagcg	10	13	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44049287	T	T	44049287	3	4	96	1	0	0	0	0	1	0	0	0	9389	1319	46	3	202	3	MAPT	17	44049287	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1090134	44049287	37145923	1191	96867											
KIAA1267	284058	broad.mit.edu	37	chr17	44248468	44248468	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaggcagcttcagcctttcGagtcagcatcaactggctcc	9	14	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44248468	C	C	44248468	3	2	96	1	0	0	0	0	1	0	0	0	8289	1066	37	4	2331	4	KIAA1267	17	44248468	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	199181	44248468	36946742	1192	96868											
SCRN2	90507	broad.mit.edu	37	chr17	45916152	45916152	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccccctccaccgttcaCtaaccttgccgttgccgcag	7	20	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45916152	T	T	45916152	1	4	96	0	1	0	0	0	0	0	0	0	14052	580	20	4		4	SCRN2	17	45916152	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1667684	45916152	35279058	1193	96869											
HOXB1	3211	broad.mit.edu	37	chr17	46608020	46608020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcggcaggagcataccCcgagggcgcggagctgggga	20	11	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46608020	A	A	46608020	3	1	96	1	0	0	0	0	1	0	0	0	7366	623	22	2	666	2	HOXB1	17	46608020	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	691868	46608020	34587190	1194	96870											
IGF2BP1	10642	broad.mit.edu	37	chr17	47119023	47119023	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagagcatttaaaaaatccCtgtaaggactggatctgccc	8	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47119023	G	G	47119023	1	3	96	0	1	0	0	0	0	0	0	0	7643	696	24	4		4	IGF2BP1	17	47119023	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	511003	47119023	34076187	1195	96871											
IGF2BP1	10642	broad.mit.edu	37	chr17	47123622	47123622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctctggccacccccagGtgaacgagttgcagaatttg	10	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47123622	T	T	47123622	3	4	96	1	0	0	0	0	1	0	0	0	7643	1275	44	3	1582	3	IGF2BP1	17	47123622	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4599	47123622	34071588	1196	96872											
UTP18	51096	broad.mit.edu	37	chr17	49353256	49353256	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccagcatgcgaatgctgaAcgtcctactgttgctcggat	11	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49353256	T	T	49353256	3	4	96	1	0	0	0	0	1	0	0	0	17225	40	2	5	763	5	UTP18	17	49353256	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	2229634	49353256	31841954	1197	96873											
KIF2B	84643	broad.mit.edu	37	chr17	51900310	51900310	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgcaaccctgctcagtGctccgggcgcttcaggctgg	13	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51900310	T	T	51900310	1	4	96	0	1	0	0	0	0	0	0	0	8368	1334	46	3		3	KIF2B	17	51900310	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2547054	51900310	29294900	1198	96874											
KIF2B	84643	broad.mit.edu	37	chr17	51901221	51901221	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcgatgacaaagcctccaAcgagttggtgtaccagttca	9	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51901221	G	G	51901221	3	3	96	1	0	0	0	0	1	0	0	0	8368	43	2	5	829	5	KIF2B	17	51901221	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	911	51901221	29293989	1199	96875											
CUEDC1	404093	broad.mit.edu	37	chr17	55948816	55948816	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacacggtagtttgctaGaggctaagtccccagaatca	12	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55948816	T	T	55948816	1	4	96	0	1	0	0	0	0	0	0	0	4085	957	33	3		3	CUEDC1	17	55948816	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4047595	55948816	25246394	1200	96876											
MRC2	9902	broad.mit.edu	37	chr17	60744814	60744814	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgagtcctcgggcggctGgcagaaccgtgactgcagca	14	13	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60744814	A	A	60744814	4	1	96	1	0	0	0	0	0	1	0	0	9852	1357	47	4	1059	4	MRC2	17	60744814	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	4795998	60744814	20450396	1201	96877											
ABCA9	10350	broad.mit.edu	37	chr17	66982438	66982438	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccaggaagcccaggggttCccctccaccgctccctttca	8	20	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66982438	T	T	66982438	3	4	96	1	0	0	0	0	1	0	0	0	39	864	30	4	831	4	ABCA9	17	66982438	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	6237624	66982438	14212772	1202	96878											
CDC42EP4	23580	broad.mit.edu	37	chr17	71282454	71282454	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgttcgtccaaggactcGccgtcgggctcgccagcctt	13	15	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71282454	A	A	71282454	2	1	96	1	0	0	0	0	0	0	0	1	3108	1074	38	4		4	CDC42EP4	17	71282454	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	4300016	71282454	9912756	1203	96879											
CD300C	10871	broad.mit.edu	37	chr17	72538993	72538993	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccagtcctatgcgcaggcAccttacccagggtgtgggct	13	14	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72538993	T	T	72538993	1	4	96	0	1	0	0	0	0	0	0	0	3027	174	6	5		5	CD300C	17	72538993	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1256539	72538993	8656217	1204	96880											
ITGB4	3691	broad.mit.edu	37	chr17	73736056	73736056	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgctgcgcagcgggaacCtcaagggccgtgacgtggtc	15	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73736056	T	T	73736056	3	4	96	1	0	0	0	0	1	0	0	0	7967	681	24	4	2424	4	ITGB4	17	73736056	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1197063	73736056	7459154	1205	96881											
TMC6	11322	broad.mit.edu	37	chr17	76115333	76115333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccggggggaaaggggcaCtgaccgaggggccagacagt	18	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76115333	A	A	76115333	1	1	96	0	1	0	0	0	0	0	0	0	16112	580	20	3		3	TMC6	17	76115333	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2379277	76115333	5079877	1206	96882											
DNAH17	8632	broad.mit.edu	37	chr17	76433798	76433798	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgttggtgatcttgatggcGttctccagaatgccctgggg	14	9	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76433798	A	A	76433798	2	1	96	1	0	0	0	0	0	0	0	1	4641	1136	40	4		4	DNAH17	17	76433798	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	318465	76433798	4761412	1207	96883											
SLC38A10	124565	broad.mit.edu	37	chr17	79246366	79246366	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaacaccacagagaggGtaagtgctttaaaccggaga	10	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79246366	A	A	79246366	3	1	96	1	0	0	0	0	1	0	0	0	14716	1261	44	4	2695	4	SLC38A10	17	79246366	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2812568	79246366	1948844	1208	96884											
LAMA1	284217	broad.mit.edu	37	chr18	6985219	6985219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagctcttgagttcccaCaaaggcgtgttcctacctgt	9	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6985219	A	A	6985219	1	1	96	0	1	0	0	0	0	0	0	0	8677	493	17	3		3	LAMA1	18	6985219	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08		6985219	71092029	1209	96885											
LAMA1	284217	broad.mit.edu	37	chr18	7007241	7007241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccctgtcactccctgctGggagcttccctctgtggtac	10	16	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7007241	T	T	7007241	3	4	96	1	0	0	0	0	1	0	0	0	8677	1348	47	2	5210	2	LAMA1	18	7007241	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	22022	7007241	71070007	1210	96886											
FAM38B	63895	broad.mit.edu	37	chr18	10672837	10672837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttagttgtattgtctctgGacaaaatgatggtaatatcc	8	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10672837	T	T	10672837	3	4	96	1	0	0	0	0	1	0	0	0	5606	1174	41	3	410	3	FAM38B	18	10672837	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3665596	10672837	67404411	1211	96887											
FAM38B	63895	broad.mit.edu	37	chr18	10696195	10696195	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctcggtccaccaccatgGttccaaactgaatgaggacc	11	13	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10696195	C	C	10696195	3	2	96	1	0	0	0	0	1	0	0	0	5606	1261	44	4	1570	4	FAM38B	18	10696195	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	23358	10696195	67381053	1212	96888											
SLMO1	10650	broad.mit.edu	37	chr18	12427196	12427196	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctcagggctggtcagccCcttttcttcttgctcttttg	8	13	6	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12427196	G	G	12427196	1	3	96	0	1	0	0	0	0	0	0	0	14864	638	22	4		4	SLMO1	18	12427196	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1731001	12427196	65650052	1213	96889											
ANKRD30B	374860	broad.mit.edu	37	chr18	14797600	14797600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatattcacactgtatgaaCgtttggtaggctttgtcagg	10	7	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797600	A	A	14797600	1	1	96	0	1	0	0	0	0	0	0	0	659	551	19	3		3	ANKRD30B	18	14797600	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2370404	14797600	63279648	1214	96890											
ANKRD30B	374860	broad.mit.edu	37	chr18	14822354	14822354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaataacccaaaagaccCcaaaacctagtgtaatctct	3	13	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14822354	A	A	14822354	1	1	96	0	1	0	0	0	0	0	0	0	659	638	22	2		2	ANKRD30B	18	14822354	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	24754	14822354	63254894	1215	96891											
RIOK3	8780	broad.mit.edu	37	chr18	21044115	21044115	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaacttcattgagtggtaGaaaacactcataatgtgctc	8	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21044115	C	C	21044115	1	2	96	0	1	0	0	0	0	0	0	0	13490	957	33	4		4	RIOK3	18	21044115	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6221761	21044115	57033133	1216	96892											
LAMA3	3909	broad.mit.edu	37	chr18	21343292	21343292	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttatagctcaattagcAgtaatactatttacgctatt	4	6	1	0	rs144223636	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21343292	G	G	21343292	1	3	96	0	1	0	0	0	0	0	0	0	8679	203	7	5		5	LAMA3	18	21343292	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	299177	21343292	56733956	1217	96893											
DSG1	1828	broad.mit.edu	37	chr18	28935179	28935179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattggcctgagcagcttggGagggacagccagcattggcc	15	11	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28935179	T	T	28935179	3	4	96	1	0	0	0	0	1	0	0	0	4816	1174	41	3	3078	3	DSG1	18	28935179	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	7591887	28935179	49142069	1218	96894											
DTNA	1837	broad.mit.edu	37	chr18	32418944	32418944	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttcagttaagaagtctcTcgtgatgttagtttggatac	11	5	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32418944	C	C	32418944	1	2	96	0	1	0	0	0	0	0	0	0	4828	1566	54	5		5	DTNA	18	32418944	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	3483765	32418944	45658304	1219	96895											
DTNA	1837	broad.mit.edu	37	chr18	32431873	32431873	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaaggcagctgattgctGagctagaaaacaagaacagg	12	7	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32431873	A	A	32431873	3	1	96	1	0	0	0	0	1	0	0	0	4828	1291	45	4	1521	4	DTNA	18	32431873	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	12929	32431873	45645375	1220	96896											
KIAA1632	57724	broad.mit.edu	37	chr18	43497741	43497741	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaatgtcttgactggaccaGaattcccaatagtgggatgc	10	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43497741	A	A	43497741	2	1	96	1	0	0	0	0	0	0	0	1	8319	933	33	4		4	KIAA1632	18	43497741	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	11065868	43497741	34579507	1221	96897											
SMAD4	4089	broad.mit.edu	37	chr18	48591909	48591909	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggatacgtggacccttctGgaggagatcgcttttgtttg	13	7	1	1	rs121912576		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48591909	T	T	48591909	4	4	96	1	0	0	0	0	0	1	0	0	14874	1349	47	2	1102	2	SMAD4	18	48591909	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5094168	48591909	29485339	1222	96898											
WDR7	23335	broad.mit.edu	37	chr18	54694412	54694412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctcatggcccatgacGggaaggagcaccgcttcatg	11	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54694412	T	T	54694412	3	4	96	1	0	0	0	0	1	0	0	0	17447	1116	39	1	4553	1	WDR7	18	54694412	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	6102503	54694412	23382836	1223	96899											
NEDD4L	23327	broad.mit.edu	37	chr18	55983408	55983408	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgtggccttagtcctttCtggaaagtggtcctttcaag	11	9	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55983408	A	A	55983408	1	1	96	0	1	0	0	0	0	0	0	0	10406	928	32	3		3	NEDD4L	18	55983408	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1288996	55983408	22093840	1224	96900											
CDH7	1005	broad.mit.edu	37	chr18	63489400	63489400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggcaaaggatatggttGgtcaaaatggaggactgtca	13	5	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63489400	T	T	63489400	3	4	96	1	0	0	0	0	1	0	0	0	3145	1348	47	2	723	2	CDH7	18	63489400	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	7505992	63489400	14587848	1225	96901											
CCDC102B	79839	broad.mit.edu	37	chr18	66541772	66541772	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccacaatcattacatcatCagcaacaagcctgccagaat	4	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66541772	T	T	66541772	1	4	96	0	1	0	0	0	0	0	0	0	2763	841	29	4		4	CCDC102B	18	66541772	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3052372	66541772	11535476	1226	96902											
CBLN2	147381	broad.mit.edu	37	chr18	70205763	70205763	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactcccagctagttcagagCcacatcaccccctggacaga	7	17	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70205763	G	G	70205763	1	3	96	0	1	0	0	0	0	0	0	0	2731	754	26	4		4	CBLN2	18	70205763	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3663991	70205763	7871485	1227	96903											
ATP9B	374868	broad.mit.edu	37	chr18	77107846	77107846	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaggctgctcatggtgcAcgggcggaacagctacaaga	15	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77107846	C	C	77107846	3	2	96	1	0	0	0	0	1	0	0	0	1203	159	6	5	2853	5	ATP9B	18	77107846	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	6902083	77107846	969402	1228	96904											
THEG	51298	broad.mit.edu	37	chr19	375777	375777	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggccacctcctcggggGgaagctcctcttctgggtct	12	17	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	375777	A	A	375777	3	1	96	1	0	0	0	0	1	0	0	0	15980	1232	43	4	977	4	THEG	19	375777	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08		375777	58753206	1229	96905											
TCF3	6929	broad.mit.edu	37	chr19	1627466	1627466	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgggaggcgaccccaaGgaacatcctgagggcccccg	14	13	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1627466	A	A	1627466	1	1	96	0	1	0	0	0	0	0	0	0	15816	1015	35	4		4	TCF3	19	1627466	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1251689	1627466	57501517	1230	96906											
MKNK2	2872	broad.mit.edu	37	chr19	2043490	2043490	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccagtgcggtggcaagggTggctcacctacctgtgtccc	15	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2043490	C	C	2043490	1	2	96	0	1	0	0	0	0	0	0	0	9698	1711	59	5		5	MKNK2	19	2043490	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	416024	2043490	57085493	1231	96907											
PIP5K1C	23396	broad.mit.edu	37	chr19	3638995	3638995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacagcagcagaggcacCggccggggaagcctccaccc	12	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3638995	A	A	3638995	3	1	96	1	0	0	0	0	1	0	0	0	12036	652	23	1	211	1	PIP5K1C	19	3638995	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1595505	3638995	55489988	1232	96908											
EEF2	1938	broad.mit.edu	37	chr19	3979399	3979399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcagctcgccggcgccCgcgatgatatgctctcccga	13	15	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3979399	A	A	3979399	2	1	96	1	0	0	0	0	0	0	0	1	4969	639	23	1		1	EEF2	19	3979399	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	340404	3979399	55149584	1233	96909											
DUS3L	56931	broad.mit.edu	37	chr19	5790421	5790421	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggaggctagaaacactTgcacgtccttaaatccttct	8	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5790421	A	A	5790421	1	1	96	0	1	0	0	0	0	0	0	0	4847	1827	63	5		5	DUS3L	19	5790421	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1811022	5790421	53338562	1234	96910											
TNFSF14	8740	broad.mit.edu	37	chr19	6667508	6667508	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacctgcagcgggggccaCgccctcgcattgctcacaca	11	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6667508	T	T	6667508	1	4	96	0	1	0	0	0	0	0	0	0	16430	551	19	4		4	TNFSF14	19	6667508	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	877087	6667508	52461475	1235	96911											
VAV1	7409	broad.mit.edu	37	chr19	6825423	6825423	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatacaaggagaggtgagAcccagctggccagactgaag	13	9	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6825423	G	G	6825423	1	3	96	0	1	0	0	0	0	0	0	0	17258	290	10	5		5	VAV1	19	6825423	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	157915	6825423	52303560	1236	96912											
INSR	3643	broad.mit.edu	37	chr19	7172531	7172531	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggtgagaagataaccctcAggctgcaaatgactggacat	11	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7172531	C	C	7172531	1	2	96	0	1	0	0	0	0	0	0	0	7843	203	7	5		5	INSR	19	7172531	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	347108	7172531	51956452	1237	96913											
INSR	3643	broad.mit.edu	37	chr19	7267399	7267399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatcgttcgacaaactgCccgttgatgacggtggcggg	13	11	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7267399	A	A	7267399	2	1	96	1	0	0	0	0	0	0	0	1	7843	726	26	3		3	INSR	19	7267399	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	94868	7267399	51861584	1238	96914											
ARHGEF18	23370	broad.mit.edu	37	chr19	7516153	7516153	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatccagaacacggaagGtaggccttctccccactgcc	8	16	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7516153	T	T	7516153	5	4	96	1	0	0	0	0	0	0	1	0	903	1275	44	3	1314	3	ARHGEF18	19	7516153	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	248754	7516153	51612830	1239	96915											
ARHGEF18	23370	broad.mit.edu	37	chr19	7523279	7523279	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttccgctttgaattgtttGaaaagaaatgaggagcgtga	11	4	0	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7523279	C	C	7523279	1	2	96	0	1	0	0	0	0	0	0	0	903	1305	45	4		4	ARHGEF18	19	7523279	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	7126	7523279	51605704	1240	96916											
PNPLA6	10908	broad.mit.edu	37	chr19	7621679	7621679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggggatgcttccgggagGgccgctgagcttctgggacg	20	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7621679	T	T	7621679	1	4	96	0	1	0	0	0	0	0	0	0	12264	1247	43	2		2	PNPLA6	19	7621679	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	98400	7621679	51507304	1241	96917											
MAP2K7	5609	broad.mit.edu	37	chr19	7975484	7975484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggccgcgccctgcagcGtctcctcctccctcacccct	7	23	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7975484	T	T	7975484	1	4	96	0	1	0	0	0	0	0	0	0	9334	1160	40	3		3	MAP2K7	19	7975484	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	353805	7975484	51153499	1242	96918											
MAP2K7	5609	broad.mit.edu	37	chr19	7976183	7976183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagccggactatgacatcCgggccgacgtatggagcctg	13	13	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7976183	T	T	7976183	3	4	96	1	0	0	0	0	1	0	0	0	9334	643	23	4	934	4	MAP2K7	19	7976183	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	699	7976183	51152800	1243	96919											
MUC16	94025	broad.mit.edu	37	chr19	9002340	9002340	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatcctgagggtaaattcaGtttgagatgaagaagaaacc	11	5	1	6			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9002340	C	C	9002340	1	2	96	0	1	0	0	0	0	0	0	0	10067	1044	36	4		4	MUC16	19	9002340	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1026157	9002340	50126643	1244	96920											
MUC16	94025	broad.mit.edu	37	chr19	9011578	9011578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggaaggactgcaaggaaCcagaggaaatgagaagtctg	16	5	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9011578	A	A	9011578	1	1	96	0	1	0	0	0	0	0	0	0	10067	522	18	3		3	MUC16	19	9011578	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	9238	9011578	50117405	1245	96921											
MUC16	94025	broad.mit.edu	37	chr19	9020885	9020885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctaaggtgcatgtgtgtgGggcagaagtcaggtgggtgg	21	4	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9020885	T	T	9020885	1	4	96	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	9020885	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	9307	9020885	50108098	1246	96922											
MUC16	94025	broad.mit.edu	37	chr19	9033633	9033633	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctgcagttctctctctgTggcgttgaacttcctggaac	9	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9033633	G	G	9033633	3	3	96	1	0	0	0	0	1	0	0	0	10067	1696	59	5	7523	5	MUC16	19	9033633	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	12748	9033633	50095350	1247	96923											
MUC16	94025	broad.mit.edu	37	chr19	9046284	9046284	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcaggaaatgttttacTtgtctctgttctgggatggg	13	5	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9046284	A	A	9046284	3	1	96	1	0	0	0	0	1	0	0	0	10067	1609	56	5	8496	5	MUC16	19	9046284	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	12651	9046284	50082699	1248	96924											
MUC16	94025	broad.mit.edu	37	chr19	9077693	9077693	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgctgccacttcctagGgctgtggactgaagggtgac	15	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9077693	T	T	9077693	2	4	96	1	0	0	0	0	0	0	0	1	10067	1219	43	2		2	MUC16	19	9077693	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	31409	9077693	50051290	1249	96925											
MUC16	94025	broad.mit.edu	37	chr19	9078005	9078005	+	Intron	DEL	C	-	-													ctgggaaagaaaatgttgagCttttaattctcacactttaa							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9078005	-	-	9078005	6	5	96	0	1	1	0	1	0	0	0	0	10067	812	28	0		0	MUC16	19	9078005	Intron	DEL	C	TCGA-38-4625-01A-01D-1553-08	312	9078005	50050978	1250	96926											
MUC16	94025	broad.mit.edu	37	chr19	9086151	9086151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgtgagtgctgtttccCatagacagggacttagaaga	13	6	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9086151	A	A	9086151	3	1	96	1	0	0	0	0	1	0	0	0	10067	594	21	2	38195	2	MUC16	19	9086151	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	8146	9086151	50042832	1251	96927											
OR7G1	125962	broad.mit.edu	37	chr19	9226295	9226295	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgggagtcagagatgaCagccaggagaatgagcaggt	18	5	1	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9226295	T	T	9226295	3	4	96	1	0	0	0	0	1	0	0	0	11316	478	17	4	864	4	OR7G1	19	9226295	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	140144	9226295	49902688	1252	96928											
IER2	9592	broad.mit.edu	37	chr19	13264219	13264219	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaccctcgcctgcacccGccccgagaagccgagtccac	9	20	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13264219	T	T	13264219	2	4	96	1	0	0	0	0	0	0	0	1	7575	1074	38	3		3	IER2	19	13264219	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	4037924	13264219	45864764	1253	96929											
CACNA1A	773	broad.mit.edu	37	chr19	13418718	13418718	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccccacccggggtgctctGagggtgtggctcagtatctc	15	13	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13418718	C	C	13418718	1	2	96	0	1	0	0	0	0	0	0	0	2564	1305	45	4		4	CACNA1A	19	13418718	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	154499	13418718	45710265	1254	96930											
CYP4F22	126410	broad.mit.edu	37	chr19	15659139	15659139	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggcctggctatgcctgcCccaggtgcactatccctgca	12	15	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15659139	G	G	15659139	1	3	96	0	1	0	0	0	0	0	0	0	4222	638	22	4		4	CYP4F22	19	15659139	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2240421	15659139	43469844	1255	96931											
CYP4F12	66002	broad.mit.edu	37	chr19	15796003	15796003	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accgcgatcctaaagagattGaatggtgagtgcaagttctt	11	7	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15796003	A	A	15796003	3	1	96	1	0	0	0	0	1	0	0	0	4220	1291	45	4	1141	4	CYP4F12	19	15796003	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	136864	15796003	43332980	1256	96932											
CYP4F12	66002	broad.mit.edu	37	chr19	15806584	15806584	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctggtacttttctaattcTctgcttctctaattgttttc	4	10	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15806584	A	A	15806584	1	1	96	0	1	0	0	0	0	0	0	0	4220	1566	54	5		5	CYP4F12	19	15806584	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	10581	15806584	43322399	1257	96933											
RAB8A	4218	broad.mit.edu	37	chr19	16222843	16222843	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctccaccataggtaacggGaccggggaatggctgggggc	16	10	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16222843	T	T	16222843	1	4	96	0	1	0	0	0	0	0	0	0	13064	1189	41	3		3	RAB8A	19	16222843	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	416259	16222843	42906140	1258	96934											
TMEM38A	79041	broad.mit.edu	37	chr19	16799120	16799120	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcattcggccatgcccGccaagtccaaggaggagttg	12	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16799120	A	A	16799120	3	1	96	1	0	0	0	0	1	0	0	0	16282	1087	38	4	860	4	TMEM38A	19	16799120	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	576277	16799120	42329863	1259	96935											
DDA1	79016	broad.mit.edu	37	chr19	17426838	17426838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctggtgcagggattgtGggtggacagagactgggcac	19	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17426838	T	T	17426838	1	4	96	0	1	0	0	0	0	0	0	0	4353	1363	47	2		2	DDA1	19	17426838	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	627718	17426838	41702145	1260	96936											
MAP1S	55201	broad.mit.edu	37	chr19	17838467	17838467	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatggcaccggcacctgcGtcccccggcagctcgaatga	11	17	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17838467	T	T	17838467	2	4	96	1	0	0	0	0	0	0	0	1	9326	1132	40	3		3	MAP1S	19	17838467	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	411629	17838467	41290516	1261	96937											
NCAN	1463	broad.mit.edu	37	chr19	19334879	19334879	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaccgctatgcactgaccttCgctgaggcccaggaggcctg	13	14	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19334879	G	G	19334879	3	3	96	1	0	0	0	0	1	0	0	0	10299	883	31	4	535	4	NCAN	19	19334879	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1496412	19334879	39794104	1262	96938											
ZNF257	113835	broad.mit.edu	37	chr19	22271585	22271585	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atactggagagaaacccttcCaatgtgaagagtgtggcaaa	11	7	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22271585	G	G	22271585	3	3	96	1	0	0	0	0	1	0	0	0	17926	595	21	4	1047	4	ZNF257	19	22271585	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2936706	22271585	36857398	1263	96939											
ZNF492	57615	broad.mit.edu	37	chr19	22847441	22847441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttagccagttatcccacCttactacacataagagaatt	4	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22847441	A	A	22847441	3	1	96	1	0	0	0	0	1	0	0	0	18070	681	24	2	980	2	ZNF492	19	22847441	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	575856	22847441	36281542	1264	96940											
ZNF681	148213	broad.mit.edu	37	chr19	23927877	23927877	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgtcttaccttatgtcCatttaaatttgaaaatttat	6	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23927877	A	A	23927877	4	1	96	1	0	0	0	0	0	1	0	0	18215	603	21	2	1466	2	ZNF681	19	23927877	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1080436	23927877	35201106	1265	96941											
POP4	10775	broad.mit.edu	37	chr19	30097258	30097258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggccgcgaagttggagaGggttggggacgttaagggtc	21	6	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30097258	T	T	30097258	1	4	96	0	1	0	0	0	0	0	0	0	12347	1015	35	2		2	POP4	19	30097258	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	6169381	30097258	29031725	1266	96942											
ZNF536	9745	broad.mit.edu	37	chr19	30934598	30934598	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccagatcacctcccagctCagccatgccttccccgagct	6	20	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934598	T	T	30934598	2	4	96	1	0	0	0	0	0	0	0	1	18101	813	29	4		4	ZNF536	19	30934598	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	837340	30934598	28194385	1267	96943											
ZNF536	9745	broad.mit.edu	37	chr19	31039771	31039771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgagaagatggcccaagGtcagctcaaggagactctgg	13	9	4	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039771	T	T	31039771	3	4	96	1	0	0	0	0	1	0	0	0	18101	1261	44	3	3255	3	ZNF536	19	31039771	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	105173	31039771	28089212	1268	96944											
CHST8	64377	broad.mit.edu	37	chr19	34180420	34180420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtctgtgccaagaccccCggcaggcagagtcctggctt	12	14	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34180420	A	A	34180420	1	1	96	0	1	0	0	0	0	0	0	0	3441	667	23	1		1	CHST8	19	34180420	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3140649	34180420	24948563	1269	96945											
KIRREL2	84063	broad.mit.edu	37	chr19	36350474	36350474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagccacctttgtctgccGggcccggagccaggccctgc	14	16	1	0	rs34494265	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36350474	T	T	36350474	3	4	96	1	0	0	0	0	1	0	0	0	8396	1116	39	1	632	1	KIRREL2	19	36350474	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2170054	36350474	22778509	1270	96946											
TBCB	1155	broad.mit.edu	37	chr19	36611762	36611762	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagagggagtatgtgcaGgtatgagggcgggcaggtta	20	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36611762	T	T	36611762	1	4	96	0	1	0	0	0	0	0	0	0	15752	1015	35	2		2	TBCB	19	36611762	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	261288	36611762	22517221	1271	96947											
ZNF790	388536	broad.mit.edu	37	chr19	37314698	37314698	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaacatcatcaactgttGgaaagaataattccaagtat	6	8	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37314698	A	A	37314698	1	1	96	0	1	0	0	0	0	0	0	0	18291	1363	47	4		4	ZNF790	19	37314698	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	702936	37314698	21814285	1272	96948											
GGN	199720	broad.mit.edu	37	chr19	38880863	38880863	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggaggggagatgagggttGagggaacattccatgggaga	19	3	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38880863	A	A	38880863	1	1	96	0	1	0	0	0	0	0	0	0	6422	1305	45	4		4	GGN	19	38880863	5'Flank	SNP	G	TCGA-38-4625-01A-01D-1553-08	1566165	38880863	20248120	1273	96949											
PAPL	390928	broad.mit.edu	37	chr19	39591139	39591139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggaagctggactcagGgcctgacagtggcggggtat	19	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39591139	T	T	39591139	1	4	96	0	1	0	0	0	0	0	0	0	11521	1247	43	2		2	PAPL	19	39591139	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	710276	39591139	19537844	1274	96950											
CYP2A7	1549	broad.mit.edu	37	chr19	41415986	41415987	+	Intron	DNP	GG	TT	TT													aatctcatggacctttgctgGgggaggaaggggaatgcgtt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	41415987	TT	TT	41415986	1	4	96	0	1	0	0	0	0	0	0	0	4196	1247	43	2		2	CYP2A7	19	41415986	Intron	DNP	GG	TCGA-38-4625-01A-01D-1553-08	1824847	41415986	17712997	1275	96951											
AXL	558	broad.mit.edu	37	chr19	41745580	41745580	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctgagcacatctcctctCtgtcctttcttctcacaggg	6	15	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41745580	G	G	41745580	1	3	96	0	1	0	0	0	0	0	0	0	1243	928	32	4		4	AXL	19	41745580	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	329594	41745580	17383403	1276	96952											
PSG6	5675	broad.mit.edu	37	chr19	43422078	43422079	+	5'Flank	DNP	GG	TC	TC													cagggcagaagcacttctcaGgctcatgggcggggtcaggc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	43422079	TC	TC	43422078	1	4	96	0	1	0	0	0	0	0	0	0	12765	1015	35	2		2	PSG6	19	43422078	5'Flank	DNP	GG	TCGA-38-4625-01A-01D-1553-08	1676498	43422078	15706905	1277	96953											
PSG6	5675	broad.mit.edu	37	chr19	43576602	43576602	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttctcgtgacactgggtaGaatgaggatcctgttttcaa	10	7	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43576602	C	C	43576602	1	2	96	0	1	0	0	0	0	0	0	0	12765	957	33	4		4	PSG6	19	43576602	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	154524	43576602	15552381	1278	96954											
PSG6	5675	broad.mit.edu	37	chr19	43586697	43586697	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatttgatgtgctctgtgcAgggaggggctgagaggggcc	18	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43586697	G	G	43586697	3	3	96	1	0	0	0	0	1	0	0	0	12765	188	7	5		5	PSG6	19	43586697	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	10095	43586697	15542286	1279	96955											
PSG9	5678	broad.mit.edu	37	chr19	43773541	43773541	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagcaggagccccttccAggtgatgcgctgtgtgcagg	16	10	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43773541	T	T	43773541	3	4	96	1	0	0	0	0	1	0	0	0	12768	188	7	5	1261	5	PSG9	19	43773541	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	186844	43773541	15355442	1280	96956											
CLPTM1	1209	broad.mit.edu	37	chr19	45491440	45491440	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaagaatggtaggaacAggaccccagggctagtgaga	13	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45491440	G	G	45491440	1	3	96	0	1	0	0	0	0	0	0	0	3586	203	7	5		5	CLPTM1	19	45491440	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1717899	45491440	13637543	1281	96957											
PRKD2	25865	broad.mit.edu	37	chr19	47200387	47200387	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgggcacagcgggaagtccGagggagctgaaagcccggag	19	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47200387	A	A	47200387	1	1	96	0	1	0	0	0	0	0	0	0	12625	1073	37	4		4	PRKD2	19	47200387	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1708947	47200387	11928596	1282	96958											
CARD8	22900	broad.mit.edu	37	chr19	48733782	48733783	+	Frame_Shift_Ins	INS	-	G	G													aatagatcaatgtgttggaaINSgtgatggggatggagaggcg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48733783	G	G	48733782	7	5	96	1	0	1	1	0	0	0	0	0	2677	59	3	0	685	0	CARD8	19	48733782	Frame_Shift_Ins	INS	-	TCGA-38-4625-01A-01D-1553-08	1533395	48733782	10395201	1283	96959											
KDELR1	10945	broad.mit.edu	37	chr19	48887437	48887437	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagtccccagggagggcagGagctgcagaaataggaggtt	16	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48887437	C	C	48887437	1	2	96	0	1	0	0	0	0	0	0	0	8189	1189	41	4		4	KDELR1	19	48887437	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	153655	48887437	10241546	1284	96960											
RPL18	6141	broad.mit.edu	37	chr19	49120496	49120496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggttgctcccagagctcCaagtcctgcctcccttccag	8	18	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49120496	A	A	49120496	1	1	96	0	1	0	0	0	0	0	0	0	13675	609	21	2		2	RPL18	19	49120496	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	233059	49120496	10008487	1285	96961											
LRRC4B	94030	broad.mit.edu	37	chr19	51051826	51051826	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgttctcttgcaggttcagGtaccgcgtgttgaccgggat	13	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51051826	C	C	51051826	4	2	96	1	0	0	0	0	0	1	0	0	9094	1256	44	4	1879	4	LRRC4B	19	51051826	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1931330	51051826	8077157	1286	96962											
SHANK1	50944	broad.mit.edu	37	chr19	51207298	51207298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcctggcccccaagtcagGtcccccaactcccccatccc	5	22	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51207298	T	T	51207298	1	4	96	0	1	0	0	0	0	0	0	0	14377	1276	44	3		3	SHANK1	19	51207298	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	155472	51207298	7921685	1287	96963											
KLK7	5650	broad.mit.edu	37	chr19	51483660	51483660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctgtgtggagtagccgGggtggcggaatgacttcgag	20	6	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51483660	T	T	51483660	3	4	96	1	0	0	0	0	1	0	0	0	8480	1232	43	2	468	2	KLK7	19	51483660	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	276362	51483660	7645323	1288	96964											
KLK8	11202	broad.mit.edu	37	chr19	51501051	51501051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcctgcacagaccatgcCatctgtgatctgccccgggt	11	15	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51501051	A	A	51501051	3	1	96	1	0	0	0	0	1	0	0	0	8481	594	21	2	207	2	KLK8	19	51501051	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	17391	51501051	7627932	1289	96965											
KLK10	5655	broad.mit.edu	37	chr19	51517963	51517963	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaaggggagagttcagcCgactggggaggaagaggatg	19	5	1	3	rs144886029	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51517963	A	A	51517963	1	1	96	0	1	0	0	0	0	0	0	0	8469	667	23	1		1	KLK10	19	51517963	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	16912	51517963	7611020	1290	96966											
KLK14	43847	broad.mit.edu	37	chr19	51581198	51581198	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggggctggggcctggactCctgggtcctgagtagagaga	19	8	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51581198	A	A	51581198	1	1	96	0	1	0	0	0	0	0	0	0	8473	870	30	3		3	KLK14	19	51581198	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	63235	51581198	7547785	1291	96967											
FPR2	2358	broad.mit.edu	37	chr19	52271879	52271879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacagctgagaaatggcCattgttggaatgtttcaggt	11	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52271879	A	A	52271879	1	1	96	0	1	0	0	0	0	0	0	0	6099	609	21	2		2	FPR2	19	52271879	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	690681	52271879	6857104	1292	96968											
ZNF701	55762	broad.mit.edu	37	chr19	53085491	53085491	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgatgaagatgttctcatCaacaggacaaggcaatacag	9	8	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53085491	T	T	53085491	3	4	96	1	0	0	0	0	1	0	0	0	18232	838	29	4	391	4	ZNF701	19	53085491	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	813612	53085491	6043492	1293	96969											
ZNF347	84671	broad.mit.edu	37	chr19	53657127	53657127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctcagaatcaacacatcCccttcctatgccacaatcac	3	16	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53657127	A	A	53657127	1	1	96	0	1	0	0	0	0	0	0	0	17987	638	22	2		2	ZNF347	19	53657127	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	571636	53657127	5471856	1294	96970											
CACNG6	59285	broad.mit.edu	37	chr19	54515405	54515405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgccttcctggccctggGggtccctctgtcccaagcgg	12	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54515405	T	T	54515405	3	4	96	1	0	0	0	0	1	0	0	0	2587	1232	43	2	759	2	CACNG6	19	54515405	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	858278	54515405	4613578	1295	96971											
LILRA4	23547	broad.mit.edu	37	chr19	54848104	54848104	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagagtggacagggtcagcGccctcacctgagaccacgag	13	13	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54848104	A	A	54848104	1	1	96	0	1	0	0	0	0	0	0	0	8859	1102	38	4		4	LILRA4	19	54848104	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	332699	54848104	4280879	1296	96972											
LILRB4	11006	broad.mit.edu	37	chr19	55176397	55176397	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctcgttccaattctcagcTgggcttgcttccacgggtgt	10	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55176397	A	A	55176397	1	1	96	0	1	0	0	0	0	0	0	0	8865	1595	55	5		5	LILRB4	19	55176397	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	328293	55176397	3952586	1297	96973											
LILRB4	11006	broad.mit.edu	37	chr19	55176411	55176411	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctgggcttgcttccaCgggtgtgggagtcgggcagc	17	11	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55176411	T	T	55176411	1	4	96	0	1	0	0	0	0	0	0	0	8865	551	19	4		4	LILRB4	19	55176411	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	14	55176411	3952572	1298	96974											
PTPRH	5794	broad.mit.edu	37	chr19	55702949	55702949	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgttaggatgagaggctcagGgggtgaggctgcaaccagcg	18	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55702949	C	C	55702949	1	2	96	0	1	0	0	0	0	0	0	0	12911	1247	43	4		4	PTPRH	19	55702949	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	526538	55702949	3426034	1299	96975											
NLRP13	126204	broad.mit.edu	37	chr19	56413553	56413553	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgcaagcgggtgctgcCagctggcaaaaccagagcct	13	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56413553	A	A	56413553	2	1	96	1	0	0	0	0	0	0	0	1	10570	581	21	2		2	NLRP13	19	56413553	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	710604	56413553	2715430	1300	96976											
ZNF667	63934	broad.mit.edu	37	chr19	56969662	56969662	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatcataaatgtgggcaccAcagaagtcagagccacgctc	10	11	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56969662	T	T	56969662	1	4	96	0	1	0	0	0	0	0	0	0	18201	174	6	5		5	ZNF667	19	56969662	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	556109	56969662	2159321	1301	96977											
USP29	57663	broad.mit.edu	37	chr19	57642902	57642902	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtacttcactcagaatgaagGaacaagtatctcaggatgaa	9	7	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57642902	A	A	57642902	1	1	96	0	1	0	0	0	0	0	0	0	17186	1189	41	4		4	USP29	19	57642902	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	673240	57642902	1486081	1302	96978											
AURKC	6795	broad.mit.edu	37	chr19	57743867	57743867	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacggtggcatcatatgataGgcctcagggagaaatctgac	13	8	3	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57743867	A	A	57743867	1	1	96	0	1	0	0	0	0	0	0	0	1229	1015	35	4		4	AURKC	19	57743867	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	100965	57743867	1385116	1303	96979											
ZNF17	7565	broad.mit.edu	37	chr19	57929097	57929097	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtggcacgcgcctgtaatCccagctactcaggaggctga	13	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57929097	T	T	57929097	1	4	96	0	1	0	0	0	0	0	0	0	17869	870	30	4		4	ZNF17	19	57929097	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	185230	57929097	1199886	1304	96980											
ProSAPiP1	9762	broad.mit.edu	37	chr20	3146123	3146123	+	Intron	DEL	C	-	-													gaagggaggcagaggggaggCccagatccccagcccgcacc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3146123	-	-	3146123	6	5	96	0	1	1	0	1	0	0	0	0	12978	754	26	0		0	ProSAPiP1	20	3146123	Intron	DEL	C	TCGA-38-4625-01A-01D-1553-08		3146123	59879397	1305	96981											
PRND	23627	broad.mit.edu	37	chr20	4705047	4705047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgcacaacccaaacatGgggaaacaattatgcttttg	7	11	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4705047	T	T	4705047	1	4	96	0	1	0	0	0	0	0	0	0	12649	1363	47	2		2	PRND	20	4705047	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1558924	4705047	58320473	1306	96982											
CHGB	1114	broad.mit.edu	37	chr20	5903918	5903918	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacagggctccaagacctcaGagtgaggagagttgggatga	15	7	1	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5903918	C	C	5903918	3	2	96	1	0	0	0	0	1	0	0	0	3370	933	33	4	1142	4	CHGB	20	5903918	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1198871	5903918	57121602	1307	96983											
PLCB4	5332	broad.mit.edu	37	chr20	9364988	9364988	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcttcccataacacttatCtcactggcagacagttcggc	7	13	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9364988	T	T	9364988	3	4	96	1	0	0	0	0	1	0	0	0	12125	913	32	4	1036	4	PLCB4	20	9364988	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3461070	9364988	53660532	1308	96984											
PAK7	57144	broad.mit.edu	37	chr20	9546888	9546888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggtacaaggtggctttGtggtacccagacgggtactg	15	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9546888	T	T	9546888	3	4	96	1	0	0	0	0	1	0	0	0	11499	1368	48	3	1049	3	PAK7	20	9546888	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	181900	9546888	53478632	1309	96985											
TASP1	55617	broad.mit.edu	37	chr20	13373497	13373497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcaaatcccatggcacCatcaaggctgagaatgggaa	11	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13373497	A	A	13373497	1	1	96	0	1	0	0	0	0	0	0	0	15708	609	21	2		2	TASP1	20	13373497	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3826609	13373497	49652023	1310	96986											
SEL1L2	80343	broad.mit.edu	37	chr20	13971033	13971033	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagggatatagtaaagttacTtctagtcttttaattggctt	8	4	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13971033	A	A	13971033	1	1	96	0	1	0	0	0	0	0	0	0	14124	1624	56	5		5	SEL1L2	20	13971033	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	597536	13971033	49054487	1311	96987											
KIF16B	55614	broad.mit.edu	37	chr20	16362299	16362299	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatattaacacaggaatccaGactacaggagtgttgaaact	9	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16362299	A	A	16362299	1	1	96	0	1	0	0	0	0	0	0	0	8348	957	33	4		4	KIF16B	20	16362299	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2391266	16362299	46663221	1312	96988											
KIF16B	55614	broad.mit.edu	37	chr20	16488514	16488514	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttacctgctgctgctccTggttcaacaatgatcagtcc	7	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16488514	A	A	16488514	1	1	96	0	1	0	0	0	0	0	0	0	8348	1595	55	5		5	KIF16B	20	16488514	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	126215	16488514	46537006	1313	96989											
PCSK2	5126	broad.mit.edu	37	chr20	17445902	17445902	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaatatttctcttaatcaTtgtgcctctctccctctctc	3	13	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17445902	C	C	17445902	1	2	96	0	1	0	0	0	0	0	0	0	11695	1508	52	5		5	PCSK2	20	17445902	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	957388	17445902	45579618	1314	96990											
C20orf72	92667	broad.mit.edu	37	chr20	17951076	17951076	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataatagagagcaacggtgTcaaaagaatgaggtttggtt	12	3	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17951076	A	A	17951076	1	1	96	0	1	0	0	0	0	0	0	0	2140	1682	58	5		5	C20orf72	20	17951076	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	505174	17951076	45074444	1315	96991											
SEC23B	10483	broad.mit.edu	37	chr20	18516491	18516491	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcacaaaccaatattccttGggtattgtattaggcctgat	7	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18516491	C	C	18516491	1	2	96	0	1	0	0	0	0	0	0	0	14105	1363	47	4		4	SEC23B	20	18516491	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	565415	18516491	44509029	1316	96992											
C20orf26	26074	broad.mit.edu	37	chr20	20071686	20071686	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggatgtgagtggtgttgctCttgcgttgctgggcacccct	16	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20071686	A	A	20071686	1	1	96	0	1	0	0	0	0	0	0	0	2128	928	32	3		3	C20orf26	20	20071686	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1555195	20071686	42953834	1317	96993											
XRN2	22803	broad.mit.edu	37	chr20	21324713	21324713	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatccttcttctgtaatgtCatcattgtctgcagagtcct	6	10	5	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21324713	T	T	21324713	1	4	96	0	1	0	0	0	0	0	0	0	17587	841	29	4		4	XRN2	20	21324713	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1253027	21324713	41700807	1318	96994											
PAX1	5075	broad.mit.edu	37	chr20	21686967	21686967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggggacccacaggtcaCctttggaagtgcgcctgggt	15	11	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21686967	A	A	21686967	1	1	96	0	1	0	0	0	0	0	0	0	11572	522	18	3		3	PAX1	20	21686967	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	362254	21686967	41338553	1319	96995											
CST4	1472	broad.mit.edu	37	chr20	23669590	23669590	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaggagtagcagggtaCacagaggccgggccatggtc	15	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23669590	G	G	23669590	3	3	96	1	0	0	0	0	1	0	0	0	4008	478	17	4	420	4	CST4	20	23669590	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1982623	23669590	39355930	1320	96996											
PYGB	5834	broad.mit.edu	37	chr20	25273031	25273031	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtgatcccctccacgggctCccctccacagtgatcccggc	9	19	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25273031	G	G	25273031	1	3	96	0	1	0	0	0	0	0	0	0	12968	870	30	4		4	PYGB	20	25273031	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1603441	25273031	37752489	1321	96997											
GINS1	9837	broad.mit.edu	37	chr20	25397890	25397890	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattttctgtgtggcttccCagttgaccatctcaaatggg	11	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25397890	T	T	25397890	1	4	96	0	1	0	0	0	0	0	0	0	6451	609	21	4		4	GINS1	20	25397890	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	124859	25397890	37627630	1322	96998											
DUSP15	128853	broad.mit.edu	37	chr20	30452730	30452730	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggcagctgtctgtccatCtatgggtccatccaggggaa	13	10	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30452730	A	A	30452730	1	1	96	0	1	0	0	0	0	0	0	0	4855	928	32	3		3	DUSP15	20	30452730	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5054840	30452730	32572790	1323	96999											
HCK	3055	broad.mit.edu	37	chr20	30662551	30662551	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcctatttcctaccttccaGaaagaggcatgagcaaagcc	7	12	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30662551	C	C	30662551	1	2	96	0	1	0	0	0	0	0	0	0	7060	957	33	4		4	HCK	20	30662551	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	209821	30662551	32362969	1324	97000											
COMMD7	149951	broad.mit.edu	37	chr20	31294240	31294240	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagaagaatcacttgaacccGagaggcagaggttgtggtga	14	7	1	6			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31294240	A	A	31294240	1	1	96	0	1	0	0	0	0	0	0	0	3753	1073	37	4		4	COMMD7	20	31294240	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	631689	31294240	31731280	1325	97001											
DNMT3B	1789	broad.mit.edu	37	chr20	31389052	31389052	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgggctggaggtttcaaatGaaccctgcgctgtcatcttt	11	9	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31389052	A	A	31389052	1	1	96	0	1	0	0	0	0	0	0	0	4717	1305	45	4		4	DNMT3B	20	31389052	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	94812	31389052	31636468	1326	97002											
ZNF341	84905	broad.mit.edu	37	chr20	32354566	32354566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcgagtagcaggtgccgGgtgaacacagaggagcacgg	17	8	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32354566	T	T	32354566	1	4	96	0	1	0	0	0	0	0	0	0	17983	1247	43	2		2	ZNF341	20	32354566	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	965514	32354566	30670954	1327	97003											
PHF20	51230	broad.mit.edu	37	chr20	34505614	34505614	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttccaggaaacaggtctaGagaagcacaaactggtcctt	10	10	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34505614	C	C	34505614	1	2	96	0	1	0	0	0	0	0	0	0	11926	957	33	4		4	PHF20	20	34505614	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2151048	34505614	28519906	1328	97004											
EPB41L1	2036	broad.mit.edu	37	chr20	34776397	34776397	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctacaagaggagtaacttCtatatcaagatccggcctgg	9	10	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34776397	G	G	34776397	3	3	96	1	0	0	0	0	1	0	0	0	5194	912	32	4	1032	4	EPB41L1	20	34776397	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	270783	34776397	28249123	1329	97005											
BPI	671	broad.mit.edu	37	chr20	36953270	36953270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttcctttagtgagccccGggggttctgggaggacaggg	17	9	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36953270	T	T	36953270	1	4	96	0	1	0	0	0	0	0	0	0	1499	1131	39	1		1	BPI	20	36953270	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2176873	36953270	26072250	1330	97006											
CHD6	84181	broad.mit.edu	37	chr20	40116533	40116533	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaattaagccagggcattGagtgctcaatttggggcaat	12	6	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40116533	C	C	40116533	1	2	96	0	1	0	0	0	0	0	0	0	3360	1305	45	4		4	CHD6	20	40116533	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	3163263	40116533	22908987	1331	97007											
PTPRT	11122	broad.mit.edu	37	chr20	40709434	40709434	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagggtgccacctcagagctCctgagcccagttactgccat	10	15	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40709434	G	G	40709434	1	3	96	0	1	0	0	0	0	0	0	0	12920	870	30	4		4	PTPRT	20	40709434	3'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	592901	40709434	22316086	1332	97008											
PTPRT	11122	broad.mit.edu	37	chr20	40733211	40733211	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgggatttgctcatacctGaaattcatctttgatttggc	8	9	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40733211	T	T	40733211	3	4	96	1	0	0	0	0	1	0	0	0	12920	1299	45	3	815	3	PTPRT	20	40733211	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	23777	40733211	22292309	1333	97009											
PTPRT	11122	broad.mit.edu	37	chr20	41076722	41076722	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccattatgtttgcaccccaTtgtactgtcagaaacctttt	6	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41076722	A	A	41076722	1	1	96	0	1	0	0	0	0	0	0	0	12920	1508	52	5		5	PTPRT	20	41076722	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	343511	41076722	21948798	1334	97010											
PTPRT	11122	broad.mit.edu	37	chr20	41076865	41076866	+	Missense_Mutation	DNP	AG	TT	TT													aagggacctccttacctcgtAgagcgtgatgaccccattgg							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	41076866	TT	TT	41076865	3	4	96	1	0	0	0	0	1	0	0	0	12920	420	15	5	2923	5	PTPRT	20	41076865	Missense_Mutation	DNP	AG	TCGA-38-4625-01A-01D-1553-08	143	41076865	21948655	1335	97011											
PTPRT	11122	broad.mit.edu	37	chr20	41101120	41101120	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggcagcgggtcaccgcGtagccgaagggctcccactg	14	14	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41101120	T	T	41101120	4	4	96	1	0	0	0	0	0	1	0	0	12920	1140	40	3	3246	3	PTPRT	20	41101120	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	24255	41101120	21924400	1336	97012											
MYBL2	4605	broad.mit.edu	37	chr20	42343678	42343678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttcaggtctcagcaGccaggtggtggtgctggggt	15	10	3	0	rs149981712	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42343678	T	T	42343678	1	4	96	0	1	0	0	0	0	0	0	0	10104	986	34	3		3	MYBL2	20	42343678	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1242558	42343678	20681842	1337	97013											
HNF4A	3172	broad.mit.edu	37	chr20	43058123	43058123	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttactcccacaaaggctgGaattttgagcagcccctgtc	8	12	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43058123	T	T	43058123	1	4	96	0	1	0	0	0	0	0	0	0	7320	1189	41	3		3	HNF4A	20	43058123	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	714445	43058123	19967397	1338	97014											
TP53RK	112858	broad.mit.edu	37	chr20	45315857	45315857	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtccacaaaaaagacaacTggggcagatattcctgaaat	8	8	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45315857	A	A	45315857	2	1	96	1	0	0	0	0	0	0	0	1	16514	1567	55	5		5	TP53RK	20	45315857	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	2257734	45315857	17709663	1339	97015											
DDX27	55661	broad.mit.edu	37	chr20	47859008	47859008	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggaggagctggtgaggacaGaatgaaaatagtctttggat	15	3	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47859008	C	C	47859008	1	2	96	0	1	0	0	0	0	0	0	0	4387	957	33	4		4	DDX27	20	47859008	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2543151	47859008	15166512	1340	97016											
PTGIS	5740	broad.mit.edu	37	chr20	48130834	48130834	+	Frame_Shift_Del	DEL	C	-	-													gagacaggctgctccgcttgCcaaaggatactctcgagctc							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48130834	-	-	48130834	7	5	96	1	0	1	0	1	0	0	0	0	12858	740	26	0	564	0	PTGIS	20	48130834	Frame_Shift_Del	DEL	C	TCGA-38-4625-01A-01D-1553-08	271826	48130834	14894686	1341	97017											
FAM65C	140876	broad.mit.edu	37	chr20	49203990	49203990	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggtctctgcaaagcggcAggggagggagtatgtgcggg	20	6	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49203990	C	C	49203990	1	2	96	0	1	0	0	0	0	0	0	0	5652	203	7	5		5	FAM65C	20	49203990	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	1073156	49203990	13821530	1342	97018											
CYP24A1	1591	broad.mit.edu	37	chr20	52779269	52779269	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttaccgtttccaccgcaGccagctggagctctgtgaca	9	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52779269	T	T	52779269	3	4	96	1	0	0	0	0	1	0	0	0	4187	971	34	3	587	3	CYP24A1	20	52779269	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3575279	52779269	10246251	1343	97019											
BMP7	655	broad.mit.edu	37	chr20	55748170	55748170	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgggctgacatctactcaGgccccagcttggaggcagca	12	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55748170	C	C	55748170	1	2	96	0	1	0	0	0	0	0	0	0	1471	1015	35	4		4	BMP7	20	55748170	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2968901	55748170	7277350	1344	97020											
CTCFL	140690	broad.mit.edu	37	chr20	56099141	56099141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactcactagggctccgatGgtctttctctctgcacactc	7	15	4	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56099141	T	T	56099141	3	4	96	1	0	0	0	0	1	0	0	0	4035	1348	47	2	1910	2	CTCFL	20	56099141	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	350971	56099141	6926379	1345	97021											
NPEPL1	79716	broad.mit.edu	37	chr20	57269554	57269554	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccgctgttcacccaccgctCaggtgcctctcggcgcttgg	11	18	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57269554	A	A	57269554	4	1	96	1	0	0	0	0	0	1	0	0	10669	838	29	3	269	3	NPEPL1	20	57269554	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1170413	57269554	5755966	1346	97022											
TUBB1	81027	broad.mit.edu	37	chr20	57599325	57599325	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagggcagccagcagtaCcgagccctctccgtggccga	13	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57599325	A	A	57599325	4	1	96	1	0	0	0	0	0	1	0	0	16879	518	18	3	857	3	TUBB1	20	57599325	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	329771	57599325	5426195	1347	97023											
SYCP2	10388	broad.mit.edu	37	chr20	58440721	58440721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcctaagaagtaaaatAatgagttaaccttgtattta	7	4	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58440721	T	T	58440721	1	4	96	0	1	0	0	0	0	0	0	0	15551	377	13	5		5	SYCP2	20	58440721	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	841396	58440721	4584799	1348	97024											
PSMA7	5688	broad.mit.edu	37	chr20	60713265	60713265	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccagcttaatggtcagatCatctgtttcaatggcttcgt	8	10	4	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60713265	A	A	60713265	3	1	96	1	0	0	0	0	1	0	0	0	12778	826	29	3	205	3	PSMA7	20	60713265	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2272544	60713265	2312255	1349	97025											
NTSR1	4923	broad.mit.edu	37	chr20	61340877	61340877	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtgcattaccacctgggCagcctggcgctgtccgacct	12	15	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61340877	A	A	61340877	2	1	96	1	0	0	0	0	0	0	0	1	10805	697	25	3		3	NTSR1	20	61340877	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	627612	61340877	1684643	1350	97026											
BIRC7	79444	broad.mit.edu	37	chr20	61869230	61869230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgggtgggacttggctgGggccagcatctctccgcacc	15	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61869230	T	T	61869230	1	4	96	0	1	0	0	0	0	0	0	0	1445	1247	43	2		2	BIRC7	20	61869230	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	528353	61869230	1156290	1351	97027											
ARFRP1	10139	broad.mit.edu	37	chr20	62337215	62337215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttaggctcaaacccaagCcagggtttgaacattcccag	8	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62337215	A	A	62337215	1	1	96	0	1	0	0	0	0	0	0	0	858	754	26	3		3	ARFRP1	20	62337215	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	467985	62337215	688305	1352	97028											
TPTE	7179	broad.mit.edu	37	chr21	10934954	10934954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tactgcatagattgtagactCgatagtggtttcggtgtttc	11	6	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934954	A	A	10934954	3	1	96	1	0	0	0	0	1	0	0	0	16554	884	31	3	856	3	TPTE	21	10934954	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08		10934954	37194941	1353	97029											
BAGE2	85319	broad.mit.edu	37	chr21	11039159	11039159	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagtgctttcctcatgtgggGacactaaggtttctagtgga	12	7	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11039159	C	C	11039159	1	2	96	0	1	0	0	0	0	0	0	0	1297	1189	41	4		4	BAGE2	21	11039159	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	104205	11039159	37090736	1354	97030											
SAMSN1	64092	broad.mit.edu	37	chr21	15882882	15882882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgctggaacactggatGccaggctcctgaggaagttc	12	9	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15882882	T	T	15882882	1	4	96	0	1	0	0	0	0	0	0	0	13941	1334	46	3		3	SAMSN1	21	15882882	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4843723	15882882	32247013	1355	97031											
NRIP1	8204	broad.mit.edu	37	chr21	16338568	16338568	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaacagctgtttgctgggtCtctgctcttccactgacatg	9	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16338568	G	G	16338568	3	3	96	1	0	0	0	0	1	0	0	0	10747	913	32	4	1534	4	NRIP1	21	16338568	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	455686	16338568	31791327	1356	97032											
TMPRSS15	5651	broad.mit.edu	37	chr21	19653215	19653215	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatatttctctctactcccTaatcccatttaagttccaat	1	12	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19653215	A	A	19653215	1	1	96	0	1	0	0	0	0	0	0	0	16369	1537	53	5		5	TMPRSS15	21	19653215	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	3314647	19653215	28476680	1357	97033											
APP	351	broad.mit.edu	37	chr21	27327844	27327844	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccatagggaaaacacctaTaggtgctcggagaatgcgtg	13	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27327844	C	C	27327844	1	2	96	0	1	0	0	0	0	0	0	0	817	1421	49	5		5	APP	21	27327844	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	7674629	27327844	20802051	1358	97034											
ADAMTS1	9510	broad.mit.edu	37	chr21	28214865	28214866	+	Missense_Mutation	DNP	GG	TT	TT													ctggggtgtttgtacaatctGgctgccaccgaaaacaacgt							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	28214866	TT	TT	28214865	3	4	96	1	0	0	0	0	1	0	0	0	255	1335	47	2	2065	2	ADAMTS1	21	28214865	Missense_Mutation	DNP	GG	TCGA-38-4625-01A-01D-1553-08	887021	28214865	19915030	1359	97035											
CCT8	10694	broad.mit.edu	37	chr21	30446051	30446051	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagcccaccctttccctgCcgccaggtctgaagcatcgc	8	17	1	1	rs142408912	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30446051	A	A	30446051	1	1	96	0	1	0	0	0	0	0	0	0	2990	754	26	3		3	CCT8	21	30446051	5'Flank	SNP	C	TCGA-38-4625-01A-01D-1553-08	2231186	30446051	17683844	1360	97036											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127565	32127565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccataaccacagccataatgGgagccaaacccacagccata	6	15	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32127565	T	T	32127565	2	4	96	1	0	0	0	0	0	0	0	1	8609	1219	43	2		2	KRTAP21-1	21	32127565	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	1681514	32127565	16002330	1361	97037											
KRTAP19-8	728299	broad.mit.edu	37	chr21	32410539	32410539	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaagtcaggatgatagacaGattctagtgatccaaagaat	9	5	2	5			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32410539	T	T	32410539	1	4	96	0	1	0	0	0	0	0	0	0	8606	957	33	3		3	KRTAP19-8	21	32410539	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	282974	32410539	15719356	1362	97038											
TIAM1	7074	broad.mit.edu	37	chr21	32554688	32554688	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcatgataaactccccgggtCgtggcacaacggagttcaga	12	11	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32554688	G	G	32554688	1	3	96	0	1	0	0	0	0	0	0	0	16013	899	31	4		4	TIAM1	21	32554688	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	144149	32554688	15575207	1363	97039											
C21orf45	54069	broad.mit.edu	37	chr21	33642125	33642125	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaacataactgaagtacgGtacaaggttaaaatacaagc	7	6	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33642125	A	A	33642125	1	1	96	0	1	0	0	0	0	0	0	0	2148	1276	44	4		4	C21orf45	21	33642125	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1087437	33642125	14487770	1364	97040											
IFNAR2	3455	broad.mit.edu	37	chr21	34635794	34635796	+	In_Frame_Del	DEL	ATA	-	-													ttgaccttggggatggttatAtaatgagatgactccaaaac							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34635796	-	-	34635794	7	5	96	1	0	1	0	1	0	0	0	0	7615	449	16	0	1727	0	IFNAR2	21	34635794	In_Frame_Del	DEL	ATA	TCGA-38-4625-01A-01D-1553-08	993669	34635794	13494101	1365	97041											
SLC5A3	6526	broad.mit.edu	37	chr21	35469352	35469352	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggcaacccagtggcatccTtaggtcattcagaggcagaa	12	10	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35469352	C	C	35469352	2	2	96	1	0	0	0	0	0	0	0	1	14780	1606	56	5		5	SLC5A3	21	35469352	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	833558	35469352	12660543	1366	97042											
CHAF1B	8208	broad.mit.edu	37	chr21	37775118	37775118	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcttccgtagactgagtttCactcccgacggatctttgct	8	12	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37775118	T	T	37775118	2	4	96	1	0	0	0	0	0	0	0	1	3343	825	29	4		4	CHAF1B	21	37775118	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	2305766	37775118	10354777	1367	97043											
DSCAM	1826	broad.mit.edu	37	chr21	41667981	41667981	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagatcaagtaactccataCctttagagaatttccacacg	6	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41667981	A	A	41667981	5	1	96	1	0	0	0	0	0	0	1	0	4808	521	18	3	3951	3	DSCAM	21	41667981	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	3892863	41667981	6461914	1368	97044											
DSCAM	1826	broad.mit.edu	37	chr21	42064701	42064701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccttttcagaaggtgagCgtggtgtcctgcaccctgga	12	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42064701	A	A	42064701	1	1	96	0	1	0	0	0	0	0	0	0	4808	783	27	3		3	DSCAM	21	42064701	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	396720	42064701	6065194	1369	97045											
TMPRSS2	7113	broad.mit.edu	37	chr21	42861483	42861483	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagctcccacgaggaaggtCcccagggtcaaggtgatgca	14	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42861483	G	G	42861483	2	3	96	1	0	0	0	0	0	0	0	1	16370	842	30	4		4	TMPRSS2	21	42861483	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	796782	42861483	5268412	1370	97046											
CBS	875	broad.mit.edu	37	chr21	44478211	44478212	+	Intron	DNP	GG	TT	TT													acctgtttgagctgcctgtaGgtgactgcgcatctgtttga							TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44478212	TT	TT	44478211	1	4	96	0	1	0	0	0	0	0	0	0	2737	1015	35	2		2	CBS	21	44478211	Intron	DNP	GG	TCGA-38-4625-01A-01D-1553-08	1616728	44478211	3651684	1371	97047											
SIK1	150094	broad.mit.edu	37	chr21	44838254	44838254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtggcggactgcgaccCcaggaagggcgaggccagcc	19	12	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44838254	A	A	44838254	3	1	96	1	0	0	0	0	1	0	0	0	14430	623	22	2	733	2	SIK1	21	44838254	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	360043	44838254	3291641	1372	97048											
RRP1	8568	broad.mit.edu	37	chr21	45212667	45212667	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtcagaacctctgagcatCagagccaccagacccaggag	10	13	3	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45212667	G	G	45212667	1	3	96	0	1	0	0	0	0	0	0	0	13796	841	29	4		4	RRP1	21	45212667	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	374413	45212667	2917228	1373	97049											
C21orf29	54084	broad.mit.edu	37	chr21	45947090	45947090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaaactcctttacctgCagaatcagtgtagggggccc	12	10	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45947090	A	A	45947090	1	1	96	0	1	0	0	0	0	0	0	0	2146	725	25	3		3	C21orf29	21	45947090	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	734423	45947090	2182805	1374	97050											
POTEH	23784	broad.mit.edu	37	chr22	16287151	16287151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatccagggtggtgtgagGcctgtggaggcaagaaaacc	15	9	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287151	T	T	16287151	1	4	96	0	1	0	0	0	0	0	0	0	12363	1218	42	3		3	POTEH	22	16287151	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08		16287151	35017415	1375	97051											
GAB4	128954	broad.mit.edu	37	chr22	17489065	17489065	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggcgttgctggaggtgGggtgtgagggacggcttgcg	23	5	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17489065	T	T	17489065	1	4	96	0	1	0	0	0	0	0	0	0	6211	1247	43	2		2	GAB4	22	17489065	5'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	1201914	17489065	33815501	1376	97052											
KLHL22	84861	broad.mit.edu	37	chr22	20805123	20805123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgtaatagatgctgagcCtttcatccactatggtttac	8	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20805123	A	A	20805123	1	1	96	0	1	0	0	0	0	0	0	0	8448	696	24	2		2	KLHL22	22	20805123	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3316058	20805123	30499443	1377	97053											
PI4KA	5297	broad.mit.edu	37	chr22	21084035	21084035	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcacaggtgtagtcctcaGatgctacctgtctgccctga	10	12	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21084035	A	A	21084035	1	1	96	0	1	0	0	0	0	0	0	0	11968	957	33	4		4	PI4KA	22	21084035	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	278912	21084035	30220531	1378	97054											
ZNF280B	140883	broad.mit.edu	37	chr22	22843071	22843071	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtatgaacattatttgagGgtgtactttgctgagtattc	11	4	0	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22843071	A	A	22843071	3	1	96	1	0	0	0	0	1	0	0	0	17941	1232	43	4	982	4	ZNF280B	22	22843071	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1759036	22843071	28461495	1379	97055											
TFIP11	24144	broad.mit.edu	37	chr22	26892178	26892178	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgctggacagcttactacgGatgggggaatagagtggctc	16	8	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26892178	A	A	26892178	2	1	96	1	0	0	0	0	0	0	0	1	15930	1164	41	4		4	TFIP11	22	26892178	Silent	SNP	G	TCGA-38-4625-01A-01D-1553-08	4049107	26892178	24412388	1380	97056											
TFIP11	24144	broad.mit.edu	37	chr22	26902951	26902951	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaactcttttctctgcagCgatccttttgcagaaactac	6	11	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26902951	T	T	26902951	1	4	96	0	1	0	0	0	0	0	0	0	15930	783	27	4		4	TFIP11	22	26902951	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	10773	26902951	24401615	1381	97057											
ZNRF3	84133	broad.mit.edu	37	chr22	29438580	29438580	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagctcctcaggccatgccaAcactgcagcctccctgagaa	8	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29438580	T	T	29438580	1	4	96	0	1	0	0	0	0	0	0	0	18342	58	2	5		5	ZNRF3	22	29438580	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	2535629	29438580	21865986	1382	97058											
HORMAD2	150280	broad.mit.edu	37	chr22	30500295	30500295	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatggttatcaacttaatgTacatcaaagcaaaaagtgca	7	6	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30500295	C	C	30500295	1	2	96	0	1	0	0	0	0	0	0	0	7354	1653	57	5		5	HORMAD2	22	30500295	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	1061715	30500295	20804271	1383	97059											
RNF185	91445	broad.mit.edu	37	chr22	31597539	31597539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatgtcttttggaattgGggcatttccctttgggatat	11	7	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31597539	T	T	31597539	3	4	96	1	0	0	0	0	1	0	0	0	13579	1232	43	2	437	2	RNF185	22	31597539	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	1097244	31597539	19707027	1384	97060											
APOL3	80833	broad.mit.edu	37	chr22	36541707	36541707	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctacagcctaaatggcattGagaataaggtggttcgaggt	13	6	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36541707	C	C	36541707	1	2	96	0	1	0	0	0	0	0	0	0	809	1305	45	4		4	APOL3	22	36541707	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	4944168	36541707	14762859	1385	97061											
MYH9	4627	broad.mit.edu	37	chr22	36696853	36696853	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgctcctccgccccgcccTgcccctccggcgccacccct	7	27	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36696853	A	A	36696853	1	1	96	0	1	0	0	0	0	0	0	0	10136	1595	55	5		5	MYH9	22	36696853	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	155146	36696853	14607713	1386	97062											
GCAT	23464	broad.mit.edu	37	chr22	38211173	38211173	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccactgatggggccttttCcatggatggcgacatcgcac	13	12	0	1	rs142152598		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38211173	T	T	38211173	3	4	96	1	0	0	0	0	1	0	0	0	6346	855	30	4	713	4	GCAT	22	38211173	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1514320	38211173	13093393	1387	97063											
APOBEC3A	200315	broad.mit.edu	37	chr22	39358303	39358303	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgccttcccctctgctcaGagcctcctctgggttccctg	8	18	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39358303	T	T	39358303	1	4	96	0	1	0	0	0	0	0	0	0	791	957	33	3		3	APOBEC3A	22	39358303	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1147130	39358303	11946263	1388	97064											
SEPT3	55964	broad.mit.edu	37	chr22	42377700	42377700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagagctggtgcctgagcCcaggcctaagccagcggtgc	15	13	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42377700	A	A	42377700	3	1	96	1	0	0	0	0	1	0	0	0	14178	623	22	2	68	2	SEPT3	22	42377700	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3019397	42377700	8926866	1389	97065											
SAMM50	25813	broad.mit.edu	37	chr22	44372572	44372572	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccacgtgctgtgagtgctCatggttatctaatagaactt	10	9	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44372572	T	T	44372572	1	4	96	0	1	0	0	0	0	0	0	0	13940	841	29	4		4	SAMM50	22	44372572	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1994872	44372572	6931994	1390	97066											
TTC38	55020	broad.mit.edu	37	chr22	46684477	46684477	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgaccaccctgcgggaCgccagcgagtatgcagaggg	15	13	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46684477	T	T	46684477	2	4	96	1	0	0	0	0	0	0	0	1	16832	535	19	4		4	TTC38	22	46684477	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	2311905	46684477	4620089	1391	97067											
TUBGCP6	85378	broad.mit.edu	37	chr22	50656678	50656678	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatctcctccaggtcgcccAcggtggccaacctggccctg	12	17	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50656678	G	G	50656678	3	3	96	1	0	0	0	0	1	0	0	0	16896	159	6	5	363	5	TUBGCP6	22	50656678	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	3972201	50656678	647888	1392	97068											
MIOX	55586	broad.mit.edu	37	chr22	50926013	50926013	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccacccccatcacaccctgTggggctgcctgggagagggg	14	16	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50926013	A	A	50926013	1	1	96	0	1	0	0	0	0	0	0	0	9683	1711	59	5		5	MIOX	22	50926013	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	269335	50926013	378553	1393	97069											
LMF2	91289	broad.mit.edu	37	chr22	50943086	50943086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacatctgccagtccaggCgtggctggtggggcaccaca	13	14	1	0	rs148002247	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50943086	A	A	50943086	3	1	96	1	0	0	0	0	1	0	0	0	8920	768	27	3	631	3	LMF2	22	50943086	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	17073	50943086	361480	1394	97070											
ARSA	410	broad.mit.edu	37	chr22	51064137	51064137	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagtcaggggtcacggggCggggcaggccccaagcactg	18	12	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51064137	T	T	51064137	1	4	96	0	1	0	0	0	0	0	0	0	991	783	27	4		4	ARSA	22	51064137	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	121051	51064137	240429	1395	97071											
ARSF	416	broad.mit.edu	37	chrX	3022002	3022002	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttaacaagagcttattttCacccttcttccttctcagaa	4	11	3	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3022002	T	T	3022002	1	4	96	0	1	0	0	0	0	0	0	0	995	841	29	4		4	ARSF	23	3022002	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08		3022002	152248558	1396	97072											
MXRA5	25878	broad.mit.edu	37	chrX	3240858	3240858	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggctcatactcactggaTgtgggctctggtgacgatcc	14	10	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3240858	A	A	3240858	2	1	96	1	0	0	0	0	0	0	0	1	10097	1451	51	5		5	MXRA5	23	3240858	Silent	SNP	T	TCGA-38-4625-01A-01D-1553-08	218856	3240858	152029702	1397	97073											
BEND2	139105	broad.mit.edu	37	chrX	18234842	18234842	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcactgtcgtcgacagttaTaataacaaaatctaagaata	5	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18234842	C	C	18234842	3	2	96	1	0	0	0	0	1	0	0	0	1403	1406	49	5	2440	5	BEND2	23	18234842	Missense_Mutation	SNP	T	TCGA-38-4625-01A-01D-1553-08	14993984	18234842	137035718	1398	97074											
SCML2	10389	broad.mit.edu	37	chrX	18276282	18276282	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaccacattcaccgggccCgggccgaagtggtcaggcag	14	14	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18276282	A	A	18276282	2	1	96	1	0	0	0	0	0	0	0	1	14023	639	23	1		1	SCML2	23	18276282	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	41440	18276282	136994278	1399	97075											
PPEF1	5475	broad.mit.edu	37	chrX	18748515	18748515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtttgggtccattttaAgctgaggaagcttggtgaaa	13	4	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18748515	T	T	18748515	1	4	96	0	1	0	0	0	0	0	0	0	12403	87	3	5		5	PPEF1	23	18748515	Intron	SNP	A	TCGA-38-4625-01A-01D-1553-08	472233	18748515	136522045	1400	97076											
APOO	79135	broad.mit.edu	37	chrX	23874610	23874610	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatatatgcatgcatatgttCatcatagcactatgcataat	6	7	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23874610	T	T	23874610	1	4	96	0	1	0	0	0	0	0	0	0	815	841	29	4		4	APOO	23	23874610	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	5126095	23874610	131395950	1401	97077											
FAM48B2	170067	broad.mit.edu	37	chrX	24329278	24329278	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggggctggggctgcagacCactacctgctccagtgaggt	15	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24329278	G	G	24329278	3	3	96	1	0	0	0	0	1	0	0	0	5625	594	21	4	301	4	FAM48B2	23	24329278	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	454668	24329278	130941282	1402	97078											
MAGEB3	4114	broad.mit.edu	37	chrX	30254106	30254106	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagacccggggtcagaCccaggatcaccagggtgctc	13	15	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30254106	G	G	30254106	3	3	96	1	0	0	0	0	1	0	0	0	9269	507	18	4	67	4	MAGEB3	23	30254106	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	5924828	30254106	125016454	1403	97079											
FAM47A	158724	broad.mit.edu	37	chrX	34149849	34149849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggcagaattccccacaggGatgtttaccaggctcagtgg	12	11	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34149849	T	T	34149849	3	4	96	1	0	0	0	0	1	0	0	0	5620	1174	41	3	1832	3	FAM47A	23	34149849	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3895743	34149849	121120711	1404	97080											
CXorf36	79742	broad.mit.edu	37	chrX	45013320	45013320	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggagctggtaggcaaggtCggctgcctgatctgggggtg	19	8	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45013320	T	T	45013320	3	4	96	1	0	0	0	0	1	0	0	0	4139	884	31	4	513	4	CXorf36	23	45013320	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	10863471	45013320	110257240	1405	97081											
CCNB3	85417	broad.mit.edu	37	chrX	50052963	50052963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattactcaggggaagatGtcccacttaaagaagccact	8	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50052963	T	T	50052963	3	4	96	1	0	0	0	0	1	0	0	0	2944	1377	48	3	1808	3	CCNB3	23	50052963	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	5039643	50052963	105217597	1406	97082											
DGKK	139189	broad.mit.edu	37	chrX	50134575	50134575	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggatgactgccaactgacaCtgcaagaacaaaaggagaca	11	9	0	4			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50134575	G	G	50134575	5	3	96	1	0	0	0	0	0	0	1	0	4512	579	20	4	2182	4	DGKK	23	50134575	Splice_Site	SNP	C	TCGA-38-4625-01A-01D-1553-08	81612	50134575	105135985	1407	97083											
SHROOM4	57477	broad.mit.edu	37	chrX	50350458	50350458	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcaagggggctgagcctgCtcaggttgagatcccaagtg	15	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50350458	T	T	50350458	2	4	96	1	0	0	0	0	0	0	0	1	14409	796	28	4		4	SHROOM4	23	50350458	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	215883	50350458	104920102	1408	97084											
IQSEC2	23096	broad.mit.edu	37	chrX	53280025	53280025	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatcccggcactccaagCacccgggacccctgcgagtg	12	16	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53280025	A	A	53280025	3	1	96	1	0	0	0	0	1	0	0	0	7888	710	25	3	2777	3	IQSEC2	23	53280025	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2929567	53280025	101990535	1409	97085											
DGAT2L6	347516	broad.mit.edu	37	chrX	69397579	69397579	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaagagtggccaatctcCagatgaggagggttccaaag	12	9	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69397579	G	G	69397579	1	3	96	0	1	0	0	0	0	0	0	0	4499	609	21	4		4	DGAT2L6	23	69397579	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	16117554	69397579	85872981	1410	97086											
ACRC	93953	broad.mit.edu	37	chrX	70830447	70830447	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactccagcctgggcaacaaGagctaaaactccgtctcaaa	7	14	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70830447	C	C	70830447	1	2	96	0	1	0	0	0	0	0	0	0	171	957	33	4		4	ACRC	23	70830447	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	1432868	70830447	84440113	1411	97087											
ATP7A	538	broad.mit.edu	37	chrX	77264814	77264814	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctatttaatcagcactccCgtgaatcatttctggtttgc	6	11	3	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77264814	T	T	77264814	1	4	96	0	1	0	0	0	0	0	0	0	1194	667	23	4		4	ATP7A	23	77264814	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	6434367	77264814	78005746	1412	97088											
LPAR4	2846	broad.mit.edu	37	chrX	78010479	78010479	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgttgatgattccttcaAgtataatctcaatggtgctg	8	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78010479	C	C	78010479	3	2	96	1	0	0	0	0	1	0	0	0	8994	72	3	5	115	5	LPAR4	23	78010479	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	745665	78010479	77260081	1413	97089											
BRWD3	254065	broad.mit.edu	37	chrX	79948345	79948345	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattgtgagactagataagtCagataaaagggcattactcc	9	6	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79948345	A	A	79948345	1	1	96	0	1	0	0	0	0	0	0	0	1535	841	29	3		3	BRWD3	23	79948345	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	1937866	79948345	75322215	1414	97090											
DACH2	117154	broad.mit.edu	37	chrX	85950086	85950086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttgctgcacctggacccCaacatggaattgctcatgca	8	13	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85950086	A	A	85950086	3	1	96	1	0	0	0	0	1	0	0	0	4254	595	21	2	853	2	DACH2	23	85950086	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	6001741	85950086	69320474	1415	97091											
DACH2	117154	broad.mit.edu	37	chrX	86068172	86068172	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggataatgctcgcatccagGagaagcagattcaacaagaa	10	8	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86068172	T	T	86068172	4	4	96	1	0	0	0	0	0	1	0	0	4254	1175	41	3	1463	3	DACH2	23	86068172	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	118086	86068172	69202388	1416	97092											
SERPINA7	6906	broad.mit.edu	37	chrX	105280957	105280957	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggcatttggttgggatgaAtggcaggctgttactttgcc	15	6	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105280957	T	T	105280957	3	4	96	1	0	0	0	0	1	0	0	0	14207	98	4	5	1170	5	SERPINA7	23	105280957	Missense_Mutation	SNP	A	TCGA-38-4625-01A-01D-1553-08	19212785	105280957	49989603	1417	97093											
TBC1D8B	54885	broad.mit.edu	37	chrX	106083812	106083812	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcataaggctaaatatcaaGgtaatgaaatccaattattt	6	5	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106083812	A	A	106083812	1	1	96	0	1	0	0	0	0	0	0	0	15748	1015	35	4		4	TBC1D8B	23	106083812	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	802855	106083812	49186748	1418	97094											
MID2	11043	broad.mit.edu	37	chrX	107084577	107084577	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtcgtcaccgagaccatCaggtcgcatccctgaatgat	11	12	2	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107084577	T	T	107084577	4	4	96	1	0	0	0	0	0	1	0	0	9671	827	29	4	688	4	MID2	23	107084577	Nonsense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	1000765	107084577	48185983	1419	97095											
COL4A6	1288	broad.mit.edu	37	chrX	107412957	107412957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgacagacaccagaggCagagtactgaagtaacaaga	11	8	0	7			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107412957	A	A	107412957	1	1	96	0	1	0	0	0	0	0	0	0	3727	725	25	3		3	COL4A6	23	107412957	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	328380	107412957	47857603	1420	97096											
COL4A6	1288	broad.mit.edu	37	chrX	107437626	107437626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctttgtgtgttcaaagCagattacatgcatttcttaa	8	7	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107437626	A	A	107437626	1	1	96	0	1	0	0	0	0	0	0	0	3727	725	25	3		3	COL4A6	23	107437626	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	24669	107437626	47832934	1421	97097											
COL4A5	1287	broad.mit.edu	37	chrX	107802372	107802372	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaagggcctccggggcctCggggacaaaaggtatgtatc	15	10	0	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107802372	T	T	107802372	3	4	96	1	0	0	0	0	1	0	0	0	3726	875	31	4	230	4	COL4A5	23	107802372	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	364746	107802372	47468188	1422	97098											
COL4A5	1287	broad.mit.edu	37	chrX	107826236	107826236	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccttttcttctcccaggcTtgagttataaatggaaaaag	7	8	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107826236	G	G	107826236	1	3	96	0	1	0	0	0	0	0	0	0	3726	1624	56	5		5	COL4A5	23	107826236	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	23864	107826236	47444324	1423	97099											
PAK3	5063	broad.mit.edu	37	chrX	110395577	110395577	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatttttatttttctggtgTggtctctgaatgaaacattc	7	5	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110395577	C	C	110395577	1	2	96	0	1	0	0	0	0	0	0	0	11496	1711	59	5		5	PAK3	23	110395577	Intron	SNP	T	TCGA-38-4625-01A-01D-1553-08	2569341	110395577	44874983	1424	97100											
ALG13	79868	broad.mit.edu	37	chrX	110951170	110951170	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccaaggaggtaactctaaGtactttctccctccctccca	5	16	2	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110951170	C	C	110951170	1	2	96	0	1	0	0	0	0	0	0	0	515	1044	36	4		4	ALG13	23	110951170	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	555593	110951170	44319390	1425	97101											
TRPC5	7224	broad.mit.edu	37	chrX	111097033	111097033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcatccattccacgacaGttgggggaggcccctgtaca	10	12	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111097033	T	T	111097033	3	4	96	1	0	0	0	0	1	0	0	0	16707	1029	36	3	1751	3	TRPC5	23	111097033	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	145863	111097033	44173527	1426	97102											
SLC6A14	11254	broad.mit.edu	37	chrX	115590106	115590106	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacctactgttagtggcagCagaaaaccggaatgagatct	10	8	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115590106	T	T	115590106	2	4	96	1	0	0	0	0	0	0	0	1	14791	709	25	4		4	SLC6A14	23	115590106	Silent	SNP	C	TCGA-38-4625-01A-01D-1553-08	4493073	115590106	39680454	1427	97103											
WDR44	54521	broad.mit.edu	37	chrX	117532434	117532434	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggttaaaacagaaaacGtgagttacagtacatccctt	9	7	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117532434	C	C	117532434	5	2	96	1	0	0	0	0	0	0	1	0	17423	1159	40	4	1305	4	WDR44	23	117532434	Splice_Site	SNP	G	TCGA-38-4625-01A-01D-1553-08	1942328	117532434	37738126	1428	97104											
LAMP2	3920	broad.mit.edu	37	chrX	119562498	119562498	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagctgttagaaaagaacaGacagcaaggaaaggaaatta	10	5	1	3			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119562498	A	A	119562498	1	1	96	0	1	0	0	0	0	0	0	0	8690	957	33	4		4	LAMP2	23	119562498	3'UTR	SNP	G	TCGA-38-4625-01A-01D-1553-08	2030064	119562498	35708062	1429	97105											
THOC2	57187	broad.mit.edu	37	chrX	122747510	122747510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttccattctcctctttaCgtctcttggttaagtccggt	7	11	3	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122747510	A	A	122747510	3	1	96	1	0	0	0	0	1	0	0	0	15988	536	19	3	298	3	THOC2	23	122747510	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	3185012	122747510	32523050	1430	97106											
FRMD7	90167	broad.mit.edu	37	chrX	131261870	131261870	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgcacttttaaatgtagCattctcagcgaggccgttgg	10	9	1	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131261870	T	T	131261870	3	4	96	1	0	0	0	0	1	0	0	0	6115	710	25	4	2189	4	FRMD7	23	131261870	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	8514360	131261870	24008690	1431	97107											
SAGE1	55511	broad.mit.edu	37	chrX	134993770	134993770	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcacgatatccaggaggagGagatggaaaatgatcaaacc	11	7	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134993770	T	T	134993770	4	4	96	1	0	0	0	0	0	1	0	0	13920	1175	41	3	2245	3	SAGE1	23	134993770	Nonsense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	3731900	134993770	20276790	1432	97108											
SPANXN3	139067	broad.mit.edu	37	chrX	142605295	142605295	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagctatgttgaagcttccCagtgggatgtcccagagctc	11	11	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142605295	A	A	142605295	1	1	96	0	1	0	0	0	0	0	0	0	15108	609	21	2		2	SPANXN3	23	142605295	5'UTR	SNP	C	TCGA-38-4625-01A-01D-1553-08	7611525	142605295	12665265	1433	97109											
SLITRK4	139065	broad.mit.edu	37	chrX	142716612	142716612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagccactgacacctatGctattatactcctttttgct	4	12	1	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142716612	T	T	142716612	3	4	96	1	0	0	0	0	1	0	0	0	14859	1310	46	3	204	3	SLITRK4	23	142716612	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	111317	142716612	12553948	1434	97110											
CXorf1	9142	broad.mit.edu	37	chrX	144909503	144909503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagggccctgccaagaaCatatctgtatgtctggccct	9	14	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144909503	A	A	144909503	3	1	96	1	0	0	0	0	1	0	0	0	4133	478	17	3	310	3	CXorf1	23	144909503	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	2192891	144909503	10361057	1435	97111											
IDS	3423	broad.mit.edu	37	chrX	148582474	148582474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaatgtccctttcacagCcttaccttagtgttttcata	5	11	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148582474	A	A	148582474	1	1	96	0	1	0	0	0	0	0	0	0	7573	754	26	3		3	IDS	23	148582474	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	3672971	148582474	6688086	1436	97112											
HSFX2	100130086	broad.mit.edu	37	chrX	148843383	148843383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgaactggagtccaagGcctcctgagtcctccctctt	8	16	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148843383	T	T	148843383	1	4	96	0	1	0	0	0	0	0	0	0	7468	1218	42	3		3	HSFX2	23	148843383	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	260909	148843383	6427177	1437	97113											
PRRG3	79057	broad.mit.edu	37	chrX	150869017	150869017	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acccaaatgcagtctactctGtccgagacccctcgcagagc	8	16	2	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150869017	C	C	150869017	3	2	96	1	0	0	0	0	1	0	0	0	12713	1377	48	4	218	4	PRRG3	23	150869017	Missense_Mutation	SNP	G	TCGA-38-4625-01A-01D-1553-08	2025634	150869017	4401543	1438	97114											
L1CAM	3897	broad.mit.edu	37	chrX	153135154	153135154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcccatgggccacagcCcggcattgagctgcgttgag	16	12	0	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153135154	A	A	153135154	1	1	96	0	1	0	0	0	0	0	0	0	8660	638	22	2		2	L1CAM	23	153135154	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	2266137	153135154	2135406	1439	97115											
FLNA	2316	broad.mit.edu	37	chrX	153590122	153590122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggctcttagggatgggatCccctccataagtgacattga	12	9	1	2			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153590122	A	A	153590122	3	1	96	1	0	0	0	0	1	0	0	0	5991	855	30	3	5199	3	FLNA	23	153590122	Missense_Mutation	SNP	C	TCGA-38-4625-01A-01D-1553-08	454968	153590122	1680438	1440	97116											
FLNA	2316	broad.mit.edu	37	chrX	153592549	153592549	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgtcctgtcaggcagatagGagcaggtggcctgctggtca	15	9	2	1			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153592549	C	C	153592549	1	2	96	0	1	0	0	0	0	0	0	0	5991	1189	41	4		4	FLNA	23	153592549	Intron	SNP	G	TCGA-38-4625-01A-01D-1553-08	2427	153592549	1678011	1441	97117											
TAZ	6901	broad.mit.edu	37	chrX	153649130	153649130	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaccccctgctgctggcttCcagcagggtgcctccaccct	11	18	0	0			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153649130	T	T	153649130	1	4	96	0	1	0	0	0	0	0	0	0	15715	870	30	4		4	TAZ	23	153649130	Intron	SNP	C	TCGA-38-4625-01A-01D-1553-08	56581	153649130	1621430	1442	97118											
MIIP	60672	broad.mit.edu	37	chr1	12089847	12089847	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgttaccgtgtcaaccgGcgcctgttcccggtgcctgt	11	14	1	0	rs138345116		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12089847	T	T	12089847	2	4	97	1	0	0	0	0	0	0	0	1	9678	1190	42	3		3	MIIP	1	12089847	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08		12089847	237160774	1	97119											
AADACL3	126767	broad.mit.edu	37	chr1	12780812	12780812	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcccaagtgctgtgtctgTaggaagaagacggtgacaat	14	8	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12780812	C	C	12780812	1	2	97	0	1	0	0	0	0	0	0	0	12	1653	57	5		5	AADACL3	1	12780812	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	690965	12780812	236469809	2	97120											
PRAMEF12	390999	broad.mit.edu	37	chr1	12837707	12837707	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctggagcccagtcactgtCtgttgaatgcctgctgtcag	11	12	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12837707	A	A	12837707	3	1	97	1	0	0	0	0	1	0	0	0	12529	912	32	3	1427	3	PRAMEF12	1	12837707	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	56895	12837707	236412914	3	97121											
PRAMEF13	400736	broad.mit.edu	37	chr1	13448266	13448266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggcttaacttgctcagCccactggtgtggcgcaacag	11	13	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13448266	A	A	13448266	2	1	97	1	0	0	0	0	0	0	0	1	12530	726	26	3		3	PRAMEF13	1	13448266	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	610559	13448266	235802355	4	97122											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17982963	17982963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggggtcagctccctggGgccctctccctaggagggca	16	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17982963	T	T	17982963	1	4	97	0	1	0	0	0	0	0	0	0	897	1247	43	2		2	ARHGEF10L	1	17982963	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	4534697	17982963	231267658	5	97123											
KIAA0090	23065	broad.mit.edu	37	chr1	19569061	19569061	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccactgttgcttagtgggTaagaaaacaggctttggggt	13	7	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19569061	A	A	19569061	1	1	97	0	1	0	0	0	0	0	0	0	8223	1653	57	5		5	KIAA0090	1	19569061	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	1586098	19569061	229681560	6	97124											
HP1BP3	50809	broad.mit.edu	37	chr1	21099838	21099838	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctctttaaaactcctttagGaagcagaacaagatttatga	6	7	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21099838	A	A	21099838	1	1	97	0	1	0	0	0	0	0	0	0	7395	1189	41	4		4	HP1BP3	1	21099838	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1530777	21099838	228150783	7	97125											
LAPTM5	7805	broad.mit.edu	37	chr1	31210439	31210439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagagccgcagggcagGgatccactcaccttgaagat	11	14	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31210439	T	T	31210439	1	4	97	0	1	0	0	0	0	0	0	0	8698	1247	43	2		2	LAPTM5	1	31210439	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	10110601	31210439	218040182	8	97126											
BAI2	576	broad.mit.edu	37	chr1	32197661	32197661	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatgatggggctcaaggcCtccccttcttctccaacccc	7	19	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32197661	T	T	32197661	1	4	97	0	1	0	0	0	0	0	0	0	1304	696	24	4		4	BAI2	1	32197661	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	987222	32197661	217052960	9	97127											
RBBP4	5928	broad.mit.edu	37	chr1	33134048	33134048	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgagtcactatagaaatacAtggttccactcactgtgagt	8	8	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33134048	T	T	33134048	1	4	97	0	1	0	0	0	0	0	0	0	13209	232	8	5		5	RBBP4	1	33134048	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	936387	33134048	216116573	10	97128											
CSMD2	114784	broad.mit.edu	37	chr1	34083158	34083158	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcattcaccaagtagcgctCgccagtcttcaccccgttac	6	16	4	0	rs147615570		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34083158	A	A	34083158	4	1	97	1	0	0	0	0	0	1	0	0	3979	893	31	3	4824	3	CSMD2	1	34083158	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	949110	34083158	215167463	11	97129											
C1orf94	84970	broad.mit.edu	37	chr1	34663388	34663388	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttctgctgctgcctcccCgacctcctcctgcacgtcct	6	20	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34663388	A	A	34663388	2	1	97	1	0	0	0	0	0	0	0	1	2093	644	23	1		1	C1orf94	1	34663388	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	580230	34663388	214587233	12	97130											
GRIK3	2899	broad.mit.edu	37	chr1	37282894	37282894	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaccctgggcgaagagaggAgatagtcagtcccttacaac	12	10	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37282894	T	T	37282894	1	4	97	0	1	0	0	0	0	0	0	0	6841	319	11	5		5	GRIK3	1	37282894	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	2619506	37282894	211967727	13	97131											
INPP5B	3633	broad.mit.edu	37	chr1	38356974	38356974	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatacccaaaatggtctcagTactgtgaggagaacctcagt	9	9	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38356974	A	A	38356974	1	1	97	0	1	0	0	0	0	0	0	0	7825	1653	57	5		5	INPP5B	1	38356974	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	1074080	38356974	210893647	14	97132											
SF3A3	10946	broad.mit.edu	37	chr1	38435025	38435025	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggctctgaattccttaCagcaaagtgtcgctggaagg	11	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38435025	A	A	38435025	5	1	97	1	0	0	0	0	0	0	1	0	14261	492	17	3	239	3	SF3A3	1	38435025	Splice_Site	SNP	C	TCGA-38-4626-01A-01D-1553-08	78051	38435025	210815596	15	97133											
TMEM53	79639	broad.mit.edu	37	chr1	45101855	45101855	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtacaagcagctgacacgtaGacattggcactctggtgcca	11	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45101855	T	T	45101855	1	4	97	0	1	0	0	0	0	0	0	0	16302	957	33	3		3	TMEM53	1	45101855	3'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	6666830	45101855	204148766	16	97134											
ZSWIM5	57643	broad.mit.edu	37	chr1	45508774	45508774	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taataaaagccccaaaatatCtgtgtgaaaactgtccaaat	5	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45508774	T	T	45508774	1	4	97	0	1	0	0	0	0	0	0	0	18373	928	32	4		4	ZSWIM5	1	45508774	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	406919	45508774	203741847	17	97135											
FAAH	2166	broad.mit.edu	37	chr1	46871629	46871629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagtttccaaagcggtgaGtgttcagagctgctctgtgg	13	9	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46871629	T	T	46871629	1	4	97	0	1	0	0	0	0	0	0	0	5399	1044	36	3		3	FAAH	1	46871629	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1362855	46871629	202378992	18	97136											
KIAA0494	9813	broad.mit.edu	37	chr1	47157460	47157460	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgactcttacacaaaaaaGggtgagcaggagcatgctga	11	8	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47157460	C	C	47157460	1	2	97	0	1	0	0	0	0	0	0	0	8249	1015	35	4		4	KIAA0494	1	47157460	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	285831	47157460	202093161	19	97137											
PPAP2B	8613	broad.mit.edu	37	chr1	56989949	56989949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcggaggtggtgtctcacCtggcttcctggactttgctg	14	10	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56989949	A	A	56989949	3	1	97	1	0	0	0	0	1	0	0	0	12387	695	24	2	376	2	PPAP2B	1	56989949	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	9832489	56989949	192260672	20	97138											
INADL	10207	broad.mit.edu	37	chr1	62288603	62288603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtttgatcattgctttGtgttttgctacagctgctgc	9	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62288603	T	T	62288603	1	4	97	0	1	0	0	0	0	0	0	0	7801	1392	48	3		3	INADL	1	62288603	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5298654	62288603	186962018	21	97139											
LRRC7	57554	broad.mit.edu	37	chr1	70504491	70504491	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgatgagattgacattggtaCatataaggtgtataacatac	9	5	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70504491	G	G	70504491	3	3	97	1	0	0	0	0	1	0	0	0	9107	478	17	4	2944	4	LRRC7	1	70504491	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	8215888	70504491	178746130	22	97140											
SFRS11	9295	broad.mit.edu	37	chr1	70687370	70687371	+	Frame_Shift_Ins	INS	-	G	G													caggtccgggccccagcggcINSgggcccggtggcggaggtgg							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70687371	G	G	70687370	7	5	97	1	0	1	1	0	0	0	0	0	14279	755	27	0	53	0	SFRS11	1	70687370	Frame_Shift_Ins	INS	-	TCGA-38-4626-01A-01D-1553-08	182879	70687370	178563251	23	97141											
MSH4	4438	broad.mit.edu	37	chr1	76345887	76345887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaattaaattggtttaatttGagaaactgttacaattgtat	7	2	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76345887	C	C	76345887	1	2	97	0	1	0	0	0	0	0	0	0	9966	1305	45	4		4	MSH4	1	76345887	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5658517	76345887	172904734	24	97142											
FNDC7	163479	broad.mit.edu	37	chr1	109270708	109270708	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggcacagctatcattcCactcactggtgtctgaatga	9	10	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109270708	T	T	109270708	1	4	97	0	1	0	0	0	0	0	0	0	6031	609	21	4		4	FNDC7	1	109270708	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	32924821	109270708	139979913	25	97143											
GSTM2	2946	broad.mit.edu	37	chr1	110210925	110210925	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgtgcgtgtggctgggCgtgcggggtgggggcgggtg	25	6	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110210925	G	G	110210925	1	3	97	0	1	0	0	0	0	0	0	0	6904	783	27	4		4	GSTM2	1	110210925	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	940217	110210925	139039696	26	97144											
GSTM5	2949	broad.mit.edu	37	chr1	110256125	110256125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccctacttgattgatgGggctcacaagatcacccaga	10	12	2	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110256125	T	T	110256125	3	4	97	1	0	0	0	0	1	0	0	0	6907	1232	43	2	211	2	GSTM5	1	110256125	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	45200	110256125	138994496	27	97145											
CD53	963	broad.mit.edu	37	chr1	111435178	111435178	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtccttacagcagatgtgGtgccccaagtcggggagatg	15	9	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111435178	A	A	111435178	1	1	97	0	1	0	0	0	0	0	0	0	3053	1276	44	4		4	CD53	1	111435178	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1179053	111435178	137815443	28	97146											
SYCP1	6847	broad.mit.edu	37	chr1	115455572	115455572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccttcatccctttcccCtatcattatgttgaataaaa	3	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115455572	A	A	115455572	1	1	97	0	1	0	0	0	0	0	0	0	15550	696	24	2		2	SYCP1	1	115455572	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	4020394	115455572	133795049	29	97147											
TBX15	6913	broad.mit.edu	37	chr1	119469162	119469162	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattgtccacaggcacaatGtccattgctatgtagtactg	8	9	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119469162	A	A	119469162	2	1	97	1	0	0	0	0	0	0	0	1	15774	1368	48	4		4	TBX15	1	119469162	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	4013590	119469162	129781459	30	97148											
PPIAL4G	644591	broad.mit.edu	37	chr1	143767862	143767863	+	Translation_Start_Site	DNP	GG	TT	TT													tgaccatggctgatagtacaGggctcacagcgatggcggcg							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	143767863	TT	TT	143767862	1	4	97	1	0	0	0	0	0	0	0	0	12419	1015	35	2		2	PPIAL4G	1	143767862	Translation_Start_Site	DNP	GG	TCGA-38-4626-01A-01D-1553-08	24298700	143767862	105482759	31	97149											
PDE4DIP	9659	broad.mit.edu	37	chr1	144875861	144875861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggtgttcaatgaatgcCtgaattcaatacattcagca	9	7	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144875861	A	A	144875861	1	1	97	0	1	0	0	0	0	0	0	0	11737	696	24	2		2	PDE4DIP	1	144875861	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1107999	144875861	104374760	32	97150											
ANKRD34A	284615	broad.mit.edu	37	chr1	145474697	145474697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgcccctccttatgccGgggcgccaggctctcccagg	12	18	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145474697	T	T	145474697	3	4	97	1	0	0	0	0	1	0	0	0	662	1116	39	1	1371	1	ANKRD34A	1	145474697	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	598836	145474697	103775924	33	97151											
SV2A	9900	broad.mit.edu	37	chr1	149885086	149885086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcccccagactctgcccGgggaatgccctgatattccc	9	16	1	2	rs144624887		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149885086	T	T	149885086	2	4	97	1	0	0	0	0	0	0	0	1	15535	1115	39	1		1	SV2A	1	149885086	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	4410389	149885086	99365535	34	97152											
PLEKHO1	51177	broad.mit.edu	37	chr1	150129601	150129601	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccgttgaggaggacagctAtcttgcccatcccactcgag	10	14	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150129601	C	C	150129601	3	2	97	1	0	0	0	0	1	0	0	0	12179	449	16	5	464	5	PLEKHO1	1	150129601	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	244515	150129601	99121020	35	97153											
SELENBP1	8991	broad.mit.edu	37	chr1	151345021	151345021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actactccctccccagctccCcactcaggttttctagcatt	4	18	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151345021	A	A	151345021	1	1	97	0	1	0	0	0	0	0	0	0	14127	638	22	2		2	SELENBP1	1	151345021	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1215420	151345021	97905600	36	97154											
FLG	2312	broad.mit.edu	37	chr1	152278647	152278647	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagcagacccagaccacctCtcagagtcttctgaatgtcc	8	14	3	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152278647	A	A	152278647	3	1	97	1	0	0	0	0	1	0	0	0	5979	912	32	3	3474	3	FLG	1	152278647	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	933626	152278647	96971974	37	97155											
FLG	2312	broad.mit.edu	37	chr1	152279646	152279646	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgagtgtccctgactGtcactgtcctggctaaaact	8	12	3	2	rs113241501	byFrequency;by1000genomes	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152279646	A	A	152279646	2	1	97	1	0	0	0	0	0	0	0	1	5979	1368	48	4		4	FLG	1	152279646	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	999	152279646	96970975	38	97156											
FLG2	388698	broad.mit.edu	37	chr1	152323008	152323008	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcataacttaccattgaCtgttcatgatttaaactgtg	6	7	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152323008	A	A	152323008	1	1	97	0	1	0	0	0	0	0	0	0	5980	580	20	3		3	FLG2	1	152323008	3'UTR	SNP	C	TCGA-38-4626-01A-01D-1553-08	43362	152323008	96927613	39	97157											
LCE5A	254910	broad.mit.edu	37	chr1	152484167	152484167	+	Frame_Shift_Del	DEL	G	-	-													ctccagtctcttcctgctgtGgttccagctctgggggctgc							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152484167	-	-	152484167	7	5	97	1	0	1	0	1	0	0	0	0	8747	1348	47	0	159	0	LCE5A	1	152484167	Frame_Shift_Del	DEL	G	TCGA-38-4626-01A-01D-1553-08	161159	152484167	96766454	40	97158											
LCE1F	353137	broad.mit.edu	37	chr1	152748887	152748887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcagcagtgccagccccctCccaagtgcactcccaagtgc	9	18	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152748887	A	A	152748887	3	1	97	1	0	0	0	0	1	0	0	0	8736	855	30	3	42	3	LCE1F	1	152748887	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	264720	152748887	96501734	41	97159											
GATAD2B	57459	broad.mit.edu	37	chr1	153800615	153800615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatagcccttgacaccaCtgccatcctgtttggtgggt	9	13	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153800615	A	A	153800615	3	1	97	1	0	0	0	0	1	0	0	0	6323	565	20	3	1612	3	GATAD2B	1	153800615	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1051728	153800615	95450006	42	97160											
NUP210L	91181	broad.mit.edu	37	chr1	154112395	154112395	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcagctatatatattggGggagcatattctgcttcgga	10	7	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154112395	A	A	154112395	2	1	97	1	0	0	0	0	0	0	0	1	10856	1219	43	4		4	NUP210L	1	154112395	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	311780	154112395	95138226	43	97161											
AQP10	89872	broad.mit.edu	37	chr1	154296832	154296832	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgttggcacagccacttaccAgctgttggtggctctgcacc	11	14	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154296832	T	T	154296832	3	4	97	1	0	0	0	0	1	0	0	0	824	188	7	5	804	5	AQP10	1	154296832	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	184437	154296832	94953789	44	97162											
PEAR1	375033	broad.mit.edu	37	chr1	156883518	156883518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccgaagctacagctatagCtacagcaatggcccaggccc	10	14	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156883518	A	A	156883518	3	1	97	1	0	0	0	0	1	0	0	0	11806	796	28	3	2757	3	PEAR1	1	156883518	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	2586686	156883518	92367103	45	97163											
FCRL4	83417	broad.mit.edu	37	chr1	157556006	157556006	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggacagggccgtagctgtTgtctgctgtacagtagtatc	13	9	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157556006	G	G	157556006	3	3	97	1	0	0	0	0	1	0	0	0	5854	1812	63	5	488	5	FCRL4	1	157556006	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	672488	157556006	91694615	46	97164											
CD1B	910	broad.mit.edu	37	chr1	158299700	158299700	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagagatatcgggggcaGgtttcatagaggagaattct	13	7	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158299700	T	T	158299700	2	4	97	1	0	0	0	0	0	0	0	1	3005	987	35	2		2	CD1B	1	158299700	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	743694	158299700	90950921	47	97165											
PYHIN1	149628	broad.mit.edu	37	chr1	158943507	158943507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcaccaactgtggcccCtcctctttcttctgacactt	4	18	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158943507	A	A	158943507	3	1	97	1	0	0	0	0	1	0	0	0	12973	681	24	2	1456	2	PYHIN1	1	158943507	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	643807	158943507	90307114	48	97166											
RXRG	6258	broad.mit.edu	37	chr1	165377566	165377566	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttaggactctgttaacagGaaacaagcaggtaatgagaa	11	5	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165377566	A	A	165377566	1	1	97	0	1	0	0	0	0	0	0	0	13876	1189	41	4		4	RXRG	1	165377566	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	6434059	165377566	83873055	49	97167											
FAM78B	149297	broad.mit.edu	37	chr1	166039567	166039567	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcattgggtttcactagtgCattaggggggatgggttcca	16	6	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166039567	T	T	166039567	3	4	97	1	0	0	0	0	1	0	0	0	5680	710	25	4	92	4	FAM78B	1	166039567	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	662001	166039567	83211054	50	97168											
MAEL	84944	broad.mit.edu	37	chr1	166987220	166987220	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaactgacttttaagagcTgctggtctctttagctgttc	10	8	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166987220	A	A	166987220	1	1	97	0	1	0	0	0	0	0	0	0	9242	1595	55	5		5	MAEL	1	166987220	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	947653	166987220	82263401	51	97169											
MPZL1	9019	broad.mit.edu	37	chr1	167745338	167745338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtcaccagttaagcagGctcctcggaagtccccctcc	9	15	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167745338	T	T	167745338	3	4	97	1	0	0	0	0	1	0	0	0	9843	1203	42	3	661	3	MPZL1	1	167745338	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	758118	167745338	81505283	52	97170											
TBX19	9095	broad.mit.edu	37	chr1	168262493	168262493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaacccagttcatagccGtgactgcctatcagaatgag	9	11	2	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168262493	T	T	168262493	3	4	97	1	0	0	0	0	1	0	0	0	15776	1145	40	3	590	3	TBX19	1	168262493	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	517155	168262493	80988128	53	97171											
FMO1	2326	broad.mit.edu	37	chr1	171227132	171227132	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactgagcaaatcgcctaatCttccaaattctttttcctgg	5	11	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171227132	A	A	171227132	1	1	97	0	1	0	0	0	0	0	0	0	6012	928	32	3		3	FMO1	1	171227132	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2964639	171227132	78023489	54	97172											
PAPPA2	60676	broad.mit.edu	37	chr1	176585643	176585643	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaatataacaaccaggttCttcacaaaacttaattttta	3	8	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176585643	T	T	176585643	1	4	97	0	1	0	0	0	0	0	0	0	11527	928	32	4		4	PAPPA2	1	176585643	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	5358511	176585643	72664978	55	97173											
ASTN1	460	broad.mit.edu	37	chr1	176913172	176913172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctagaaagagggtagacCttcatttctgagtgttcagg	12	7	3	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176913172	A	A	176913172	1	1	97	0	1	0	0	0	0	0	0	0	1068	696	24	2		2	ASTN1	1	176913172	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	327529	176913172	72337449	56	97174											
SOAT1	6646	broad.mit.edu	37	chr1	179312163	179312163	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaacaggggccagttcaTgtagggacatagaaaatata	12	5	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179312163	A	A	179312163	1	1	97	0	1	0	0	0	0	0	0	0	15024	1479	51	5		5	SOAT1	1	179312163	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	2398991	179312163	69938458	57	97175											
NPHS2	7827	broad.mit.edu	37	chr1	179544699	179544699	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagttaccacctggaaaagTagcagatagtggtgctgaat	11	6	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179544699	G	G	179544699	1	3	97	0	1	0	0	0	0	0	0	0	10678	1653	57	5		5	NPHS2	1	179544699	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	232536	179544699	69705922	58	97176											
CACNA1E	777	broad.mit.edu	37	chr1	181706657	181706657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagccatgcccactgcccGcaggatccggagggcctgcc	12	18	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181706657	T	T	181706657	1	4	97	0	1	0	0	0	0	0	0	0	2568	1102	38	3		3	CACNA1E	1	181706657	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2161958	181706657	67543964	59	97177											
CRB1	23418	broad.mit.edu	37	chr1	197333010	197333010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagggaacgtggaaggtGcatagaggaccctaaacaga	15	6	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197333010	T	T	197333010	1	4	97	0	1	0	0	0	0	0	0	0	3880	1334	46	3		3	CRB1	1	197333010	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	15626353	197333010	51917611	60	97178											
LAX1	54900	broad.mit.edu	37	chr1	203743207	203743207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatgtcaatgtccccacaGcagaagagattgctgagact	9	9	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203743207	T	T	203743207	3	4	97	1	0	0	0	0	1	0	0	0	8720	971	34	3	658	3	LAX1	1	203743207	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	6410197	203743207	45507414	61	97179											
C1orf107	27042	broad.mit.edu	37	chr1	210015678	210015678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttttctcgagtgcggatGtggagcctcaataattggtc	12	8	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210015678	T	T	210015678	3	4	97	1	0	0	0	0	1	0	0	0	2001	1377	48	3	1588	3	C1orf107	1	210015678	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	6272471	210015678	39234943	62	97180											
USH2A	7399	broad.mit.edu	37	chr1	215820889	215820889	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttgggtggtgaaactgatCcactcggaagccgtactgcc	12	10	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215820889	T	T	215820889	4	4	97	1	0	0	0	0	0	1	0	0	17162	856	30	4	866	4	USH2A	1	215820889	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5805211	215820889	33429732	63	97181											
SLC30A10	55532	broad.mit.edu	37	chr1	220100447	220100448	+	Splice_Site	DNP	CC	AA	AA													tctgggtgttgaaggaatcaCctgcattcaaagaagaaacc							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	220100448	AA	AA	220100447	5	1	97	1	0	0	0	0	0	0	1	0	14668	521	18	3	828	3	SLC30A10	1	220100447	Splice_Site	DNP	CC	TCGA-38-4626-01A-01D-1553-08	4279558	220100447	29150174	64	97182											
PSEN2	5664	broad.mit.edu	37	chr1	227075895	227075895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagggtccctgggagcCcctctccatgtggcacaagt	13	14	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227075895	A	A	227075895	1	1	97	0	1	0	0	0	0	0	0	0	12757	638	22	2		2	PSEN2	1	227075895	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	6975448	227075895	22174726	65	97183											
SIPA1L2	57568	broad.mit.edu	37	chr1	232577115	232577115	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttataggaacccaggactttGgaaggtgggccatgccattt	12	8	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232577115	A	A	232577115	2	1	97	1	0	0	0	0	0	0	0	1	14443	1335	47	4		4	SIPA1L2	1	232577115	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	5501220	232577115	16673506	66	97184											
TARBP1	6894	broad.mit.edu	37	chr1	234565957	234565957	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatggagagagtccagctGcagctcaggcttctggtcta	13	10	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234565957	A	A	234565957	4	1	97	1	0	0	0	0	0	1	0	0	15674	1328	46	4	2444	4	TARBP1	1	234565957	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1988842	234565957	14684664	67	97185											
RYR2	6262	broad.mit.edu	37	chr1	237666676	237666676	+	Frame_Shift_Del	DEL	A	-	-													tgttatgaagctgttctgccAaaagaaaagttgaaagtgga							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	237666676	-	-	237666676	7	5	97	1	0	1	0	1	0	0	0	0	13880	117	5	0	2570	0	RYR2	1	237666676	Frame_Shift_Del	DEL	A	TCGA-38-4626-01A-01D-1553-08	3100719	237666676	11583945	68	97186											
RYR2	6262	broad.mit.edu	37	chr1	237817548	237817548	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggttttgatagctcattGcttttataattgttttccca	6	6	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237817548	T	T	237817548	1	4	97	0	1	0	0	0	0	0	0	0	13880	1334	46	3		3	RYR2	1	237817548	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	150872	237817548	11433073	69	97187											
RYR2	6262	broad.mit.edu	37	chr1	237880483	237880483	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggttcagatcccagcacttCtctttgttccataggcagct	8	12	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237880483	A	A	237880483	1	1	97	0	1	0	0	0	0	0	0	0	13880	928	32	3		3	RYR2	1	237880483	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	62935	237880483	11370138	70	97188											
RYR2	6262	broad.mit.edu	37	chr1	237947042	237947042	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggaatcttccaacaacgtGgagatgattctcaaattttt	8	7	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237947042	C	C	237947042	2	2	97	1	0	0	0	0	0	0	0	1	13880	1335	47	4		4	RYR2	1	237947042	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	66559	237947042	11303579	71	97189											
RGS7	6000	broad.mit.edu	37	chr1	240978227	240978227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaatagaagcagagggCtcttaaagagttaacaaaat	8	4	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240978227	A	A	240978227	1	1	97	0	1	0	0	0	0	0	0	0	13419	812	28	3		3	RGS7	1	240978227	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	3031185	240978227	8272394	72	97190											
EXO1	9156	broad.mit.edu	37	chr1	242042514	242042514	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttaaagagcgaggagtccAgtgacgatgagtctcatccc	12	9	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242042514	T	T	242042514	3	4	97	1	0	0	0	0	1	0	0	0	5342	188	7	5	2016	5	EXO1	1	242042514	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	1064287	242042514	7208107	73	97191											
CEP170	9859	broad.mit.edu	37	chr1	243354347	243354347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttcaagtacactggaaCatcacttttaatgcttttag	5	9	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243354347	A	A	243354347	3	1	97	1	0	0	0	0	1	0	0	0	3280	478	17	3	3755	3	CEP170	1	243354347	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1311833	243354347	5896274	74	97192											
SDCCAG8	10806	broad.mit.edu	37	chr1	243579109	243579109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagaagatacagcaaatGgaggcccagcatgacaaaac	9	10	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243579109	T	T	243579109	3	4	97	1	0	0	0	0	1	0	0	0	14072	1348	47	2	1776	2	SDCCAG8	1	243579109	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	224762	243579109	5671512	75	97193											
OR1C1	26188	broad.mit.edu	37	chr1	247921475	247921475	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atattcactaccatttggggGactgtagtcgacgtaaagca	10	8	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921475	T	T	247921475	2	4	97	1	0	0	0	0	0	0	0	1	11046	1161	41	3		3	OR1C1	1	247921475	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	4342366	247921475	1329146	76	97194											
TRIM58	25893	broad.mit.edu	37	chr1	248039832	248039832	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctagcgtagcgaacgttCctggagtggggtgaaggata	16	7	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248039832	A	A	248039832	1	1	97	0	1	0	0	0	0	0	0	0	16656	870	30	3		3	TRIM58	1	248039832	3'UTR	SNP	C	TCGA-38-4626-01A-01D-1553-08	118357	248039832	1210789	77	97195											
OR2L8	391190	broad.mit.edu	37	chr1	248112412	248112412	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaagatggcatctgattttCtgcatggaaacaagtctatc	8	8	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248112412	G	G	248112412	3	3	97	1	0	0	0	0	1	0	0	0	11103	912	32	4	255	4	OR2L8	1	248112412	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	72580	248112412	1138209	78	97196											
OR2L13	284521	broad.mit.edu	37	chr1	248263130	248263130	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctcttggacactgggGtccatcaactccttggcaca	12	12	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248263130	T	T	248263130	2	4	97	1	0	0	0	0	0	0	0	1	11100	1248	44	3		3	OR2L13	1	248263130	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	150718	248263130	987491	79	97197											
OR2T6	254879	broad.mit.edu	37	chr1	248551546	248551546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgatccccttctcgGtggtgactgcatcctacacc	9	15	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248551546	T	T	248551546	3	4	97	1	0	0	0	0	1	0	0	0	11123	1261	44	3	639	3	OR2T6	1	248551546	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	288416	248551546	699075	80	97198											
SNTG2	54221	broad.mit.edu	37	chr2	1251123	1251123	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcatatggggtgggtaaatGagaaactccaaggagctgac	14	6	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1251123	C	C	1251123	3	2	97	1	0	0	0	0	1	0	0	0	14989	1291	45	4	959	4	SNTG2	2	1251123	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08		1251123	241948250	81	97199											
RAD51AP2	729475	broad.mit.edu	37	chr2	17699715	17699715	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggatctgtccgagtcccGgcggggctccaatcccttaa	11	13	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17699715	T	T	17699715	1	4	97	0	1	0	0	0	0	0	0	0	13095	1131	39	1		1	RAD51AP2	2	17699715	5'Flank	SNP	G	TCGA-38-4626-01A-01D-1553-08	16448592	17699715	225499658	82	97200											
APOB	338	broad.mit.edu	37	chr2	21229397	21229397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagtaggttttgacttgGtatttccattaagttcttgc	9	6	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21229397	T	T	21229397	3	4	97	1	0	0	0	0	1	0	0	0	787	1261	44	3	3364	3	APOB	2	21229397	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	3529682	21229397	221969976	83	97201											
APOB	338	broad.mit.edu	37	chr2	21233785	21233785	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattcattgttgttaaattgGgtcttgagtttccaggtgcc	10	6	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21233785	A	A	21233785	2	1	97	1	0	0	0	0	0	0	0	1	787	1219	43	4		4	APOB	2	21233785	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	4388	21233785	221965588	84	97202											
ATAD2B	54454	broad.mit.edu	37	chr2	23985260	23985260	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctttaaatattcccagcTacataaaccaaaaggttttt	3	10	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23985260	G	G	23985260	1	3	97	0	1	0	0	0	0	0	0	0	1076	1537	53	5		5	ATAD2B	2	23985260	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	2751475	23985260	219214113	85	97203											
CENPA	1058	broad.mit.edu	37	chr2	27016277	27016277	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatagtcccttgtcacctcGccttccctttgttctctagt	5	16	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27016277	C	C	27016277	1	2	97	0	1	0	0	0	0	0	0	0	3256	1102	38	4		4	CENPA	2	27016277	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3031017	27016277	216183096	86	97204											
WDR43	23160	broad.mit.edu	37	chr2	29136535	29136535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacggaatatttggtgctGtgatgatgccttaatattgt	10	5	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29136535	T	T	29136535	1	4	97	0	1	0	0	0	0	0	0	0	17422	1392	48	3		3	WDR43	2	29136535	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2120258	29136535	214062838	87	97205											
ALK	238	broad.mit.edu	37	chr2	29551252	29551252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcttctccctgggcacagtCctggtggaagtcacaggcct	11	13	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29551252	A	A	29551252	3	1	97	1	0	0	0	0	1	0	0	0	525	855	30	3	3580	3	ALK	2	29551252	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	414717	29551252	213648121	88	97206											
XDH	7498	broad.mit.edu	37	chr2	31596902	31596902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgtccataaaaatgacCaaactgataactgatcccct	5	11	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31596902	A	A	31596902	1	1	97	0	1	0	0	0	0	0	0	0	17553	609	21	2		2	XDH	2	31596902	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2045650	31596902	211602471	89	97207											
STRN	6801	broad.mit.edu	37	chr2	37076763	37076763	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccataaacgtattgaacagtCatgacctatatccaaaaaaa	4	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37076763	T	T	37076763	3	4	97	1	0	0	0	0	1	0	0	0	15447	826	29	4	167	4	STRN	2	37076763	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5479861	37076763	206122610	90	97208											
EML4	27436	broad.mit.edu	37	chr2	42515415	42515415	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgactccaatgagcatatgCttactgtatgggactggcag	11	8	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42515415	G	G	42515415	3	3	97	1	0	0	0	0	1	0	0	0	5141	797	28	4	1213	4	EML4	2	42515415	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5438652	42515415	200683958	91	97209											
CRIPT	9419	broad.mit.edu	37	chr2	46851260	46851260	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgacttaaaccaaacagttGgtattatgatttgattgatc	7	5	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46851260	C	C	46851260	1	2	97	0	1	0	0	0	0	0	0	0	3910	1363	47	4		4	CRIPT	2	46851260	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	4335845	46851260	196348113	92	97210											
PSME4	23198	broad.mit.edu	37	chr2	54159167	54159167	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagttaaccaagagggcttcTtgtatctttcacgatgcaat	9	8	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54159167	C	C	54159167	3	2	97	1	0	0	0	0	1	0	0	0	12815	1609	56	5	4558	5	PSME4	2	54159167	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	7307907	54159167	189040206	93	97211											
ACYP2	98	broad.mit.edu	37	chr2	54365795	54365795	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatacagaagatgaagctaGgaaaataggagtggttggct	14	3	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54365795	C	C	54365795	3	2	97	1	0	0	0	0	1	0	0	0	229	1000	35	4	105	4	ACYP2	2	54365795	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	206628	54365795	188833578	94	97212											
SPTBN1	6711	broad.mit.edu	37	chr2	54839363	54839363	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggacaaggcccttcagttCctgaaggagcagagagtcca	13	10	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54839363	T	T	54839363	2	4	97	1	0	0	0	0	0	0	0	1	15237	854	30	4		4	SPTBN1	2	54839363	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	473568	54839363	188360010	95	97213											
USP34	9736	broad.mit.edu	37	chr2	61484357	61484357	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accagttcgggagacatttcTtcgattttggtaattagatc	9	7	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61484357	A	A	61484357	3	1	97	1	0	0	0	0	1	0	0	0	17192	1606	56	5	4811	5	USP34	2	61484357	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	6644994	61484357	181715016	96	97214											
USP34	9736	broad.mit.edu	37	chr2	61566728	61566728	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttggactatatcccaCaacaaagtatttcctttctt	3	11	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61566728	G	G	61566728	3	3	97	1	0	0	0	0	1	0	0	0	17192	477	17	4	8307	4	USP34	2	61566728	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	82371	61566728	181632645	97	97215											
ANTXR1	84168	broad.mit.edu	37	chr2	69304562	69304562	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccggattgcggacagtaAggatcatgtgtttcccgtga	14	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69304562	C	C	69304562	3	2	97	1	0	0	0	0	1	0	0	0	711	72	3	5	614	5	ANTXR1	2	69304562	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	7737834	69304562	173894811	98	97216											
DYSF	8291	broad.mit.edu	37	chr2	71795382	71795382	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaagttttctgacgtcacGggcaagatcaagctacccaa	8	13	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71795382	C	C	71795382	2	2	97	1	0	0	0	0	0	0	0	1	4899	1103	39	4		4	DYSF	2	71795382	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	2490820	71795382	171403991	99	97217											
ACTG2	72	broad.mit.edu	37	chr2	74140676	74140676	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctatgaaggctatgccctGccccatgccatcatgcgcct	8	15	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74140676	T	T	74140676	2	4	97	1	0	0	0	0	0	0	0	1	197	1306	46	3		3	ACTG2	2	74140676	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	2345294	74140676	169058697	100	97218											
DCTN1	1639	broad.mit.edu	37	chr2	74593020	74593020	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctacactaccctcacCttaatcttgagtgacttctt	5	13	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74593020	T	T	74593020	2	4	97	1	0	0	0	0	0	0	0	1	4339	695	24	4		4	DCTN1	2	74593020	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	452344	74593020	168606353	101	97219											
PCGF1	84759	broad.mit.edu	37	chr2	74733844	74733844	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagaggcccctcaaagtcAggttggtgactcactgtctt	10	11	5	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74733844	C	C	74733844	1	2	97	0	1	0	0	0	0	0	0	0	11668	203	7	5		5	PCGF1	2	74733844	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	140824	74733844	168465529	102	97220											
MRPL35	51318	broad.mit.edu	37	chr2	86433312	86433312	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttatttctgcattgtccActggacgttttagtcatatt	6	9	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86433312	C	C	86433312	3	2	97	1	0	0	0	0	1	0	0	0	9892	159	6	5	133	5	MRPL35	2	86433312	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	11699468	86433312	156766061	103	97221											
LONRF2	164832	broad.mit.edu	37	chr2	100906997	100906997	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccacacaaaacagtgtctCcacatcagaccagcaaggtt	7	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100906997	A	A	100906997	1	1	97	0	1	0	0	0	0	0	0	0	8982	870	30	3		3	LONRF2	2	100906997	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	14473685	100906997	142292376	104	97222											
IL1R2	7850	broad.mit.edu	37	chr2	102625947	102625947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccagaatcaggatcaGtcccaggtgcagggaggttt	13	11	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102625947	T	T	102625947	1	4	97	0	1	0	0	0	0	0	0	0	7729	1044	36	3		3	IL1R2	2	102625947	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1718950	102625947	140573426	105	97223											
RGPD4	285190	broad.mit.edu	37	chr2	108488728	108488728	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaaaatatgaaagggaCagaaagagtatgggtgtgga	14	2	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108488728	G	G	108488728	3	3	97	1	0	0	0	0	1	0	0	0	13396	478	17	4	4346	4	RGPD4	2	108488728	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5862781	108488728	134710645	106	97224											
RANBP2	5903	broad.mit.edu	37	chr2	109371430	109371430	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaactcgaagactatagtGaaggaggtcctctctataaa	10	7	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109371430	A	A	109371430	3	1	97	1	0	0	0	0	1	0	0	0	13136	1291	45	4	2334	4	RANBP2	2	109371430	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	882702	109371430	133827943	107	97225											
BUB1	699	broad.mit.edu	37	chr2	111398671	111398671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaccagatgtttcacaCtttgctgtgaatatagttcc	7	8	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111398671	A	A	111398671	3	1	97	1	0	0	0	0	1	0	0	0	1580	564	20	3	374	3	BUB1	2	111398671	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	2027241	111398671	131800702	108	97226											
DPP10	57628	broad.mit.edu	37	chr2	116525883	116525883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtattttagaatgaggagcCcgtgttttctagagacggca	12	6	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116525883	A	A	116525883	3	1	97	1	0	0	0	0	1	0	0	0	4767	623	22	2	1345	2	DPP10	2	116525883	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5127212	116525883	126673490	109	97227											
MARCO	8685	broad.mit.edu	37	chr2	119749988	119749988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttctttcaaaccgtgtGggttttctcctcatgacagg	11	9	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119749988	T	T	119749988	1	4	97	0	1	0	0	0	0	0	0	0	9403	1363	47	2		2	MARCO	2	119749988	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3224105	119749988	123449385	110	97228											
GLI2	2736	broad.mit.edu	37	chr2	121743871	121743871	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtgtcagtccagcccCggggcccagtcgtcctgcag	13	16	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121743871	T	T	121743871	2	4	97	1	0	0	0	0	0	0	0	1	6502	639	23	4		4	GLI2	2	121743871	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	1993883	121743871	121455502	111	97229											
PROC	5624	broad.mit.edu	37	chr2	128178938	128178938	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactccttcctggaggagctCcgtcacagcagcctggagcg	12	14	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128178938	A	A	128178938	2	1	97	1	0	0	0	0	0	0	0	1	12651	842	30	3		3	PROC	2	128178938	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	6435067	128178938	115020435	112	97230											
SMPD4	55627	broad.mit.edu	37	chr2	130930282	130930282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggggcaaacatgcaggGttgatgagccaccccccgct	13	13	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130930282	T	T	130930282	1	4	97	0	1	0	0	0	0	0	0	0	14921	1276	44	3		3	SMPD4	2	130930282	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2751344	130930282	112269091	113	97231											
NCKAP5	344148	broad.mit.edu	37	chr2	133542273	133542273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtatgttctgccttgggtCcagcaggagttgaattgatg	13	7	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133542273	A	A	133542273	3	1	97	1	0	0	0	0	1	0	0	0	10318	855	30	3	3646	3	NCKAP5	2	133542273	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	2611991	133542273	109657100	114	97232											
ZRANB3	84083	broad.mit.edu	37	chr2	136268725	136268725	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccagtaactggaacagctCcactgggttgaaggttgtta	11	9	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136268725	A	A	136268725	1	1	97	0	1	0	0	0	0	0	0	0	18353	870	30	3		3	ZRANB3	2	136268725	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2726452	136268725	106930648	115	97233											
R3HDM1	23518	broad.mit.edu	37	chr2	136403121	136403121	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatatccatgattacataAtgctaagttgacttgccttt	5	9	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136403121	T	T	136403121	1	4	97	0	1	0	0	0	0	0	0	0	12995	116	4	5		5	R3HDM1	2	136403121	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	134396	136403121	106796252	116	97234											
LRP1B	53353	broad.mit.edu	37	chr2	141135856	141135856	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caatgtacatgtctgtggctCtggggataaaaaaacagcac	10	8	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141135856	G	G	141135856	5	3	97	1	0	0	0	0	0	0	1	0	9042	927	32	4	3364	4	LRP1B	2	141135856	Splice_Site	SNP	C	TCGA-38-4626-01A-01D-1553-08	4732735	141135856	102063517	117	97235											
ORC4L	5000	broad.mit.edu	37	chr2	148730985	148730985	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggcatctgtaagtaggTccataacagtcaagaggaca	12	7	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148730985	A	A	148730985	1	1	97	0	1	0	0	0	0	0	0	0	11358	1682	58	5		5	ORC4L	2	148730985	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	7595129	148730985	94468388	118	97236											
RIF1	55183	broad.mit.edu	37	chr2	152315445	152315445	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagttggggggttttattGttcatttgtttttggacatt	12	2	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152315445	A	A	152315445	1	1	97	0	1	0	0	0	0	0	0	0	13468	1392	48	4		4	RIF1	2	152315445	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3584460	152315445	90883928	119	97237											
CYTIP	9595	broad.mit.edu	37	chr2	158272583	158272583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaagggctgggcctggcCcaggcaggggtccaaacaaa	14	13	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158272583	A	A	158272583	3	1	97	1	0	0	0	0	1	0	0	0	4240	623	22	2	397	2	CYTIP	2	158272583	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5957138	158272583	84926790	120	97238											
CCDC148	130940	broad.mit.edu	37	chr2	159166148	159166148	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcacaatatttctcgtgttCaacctgaaaagataacagag	7	8	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159166148	A	A	159166148	4	1	97	1	0	0	0	0	0	1	0	0	2808	835	29	3	944	3	CCDC148	2	159166148	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	893565	159166148	84033225	121	97239											
XIRP2	129446	broad.mit.edu	37	chr2	168102024	168102024	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtatgttattaaatctgtCacacaagaagacattcagaa	7	6	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168102024	A	A	168102024	2	1	97	1	0	0	0	0	0	0	0	1	17557	813	29	3		3	XIRP2	2	168102024	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	8935876	168102024	75097349	122	97240											
ZNF804A	91752	broad.mit.edu	37	chr2	185803228	185803228	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaccagagcaagcattattGatcccactagaaaaccatga	6	10	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185803228	T	T	185803228	3	4	97	1	0	0	0	0	1	0	0	0	18299	1281	45	3	3119	3	ZNF804A	2	185803228	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	17701204	185803228	57396145	123	97241											
ZSWIM2	151112	broad.mit.edu	37	chr2	187712504	187712504	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggaacagttacaaacgtGaggatttcctagaaaaacct	9	7	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187712504	T	T	187712504	3	4	97	1	0	0	0	0	1	0	0	0	18370	1290	45	3	1749	3	ZSWIM2	2	187712504	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1909276	187712504	55486869	124	97242											
COL5A2	1290	broad.mit.edu	37	chr2	189904125	189904125	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagggtagcatgaaccccTgggtccgttttgtttttgtc	11	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189904125	A	A	189904125	2	1	97	1	0	0	0	0	0	0	0	1	3729	1567	55	5		5	COL5A2	2	189904125	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	2191621	189904125	53295248	125	97243											
COL5A2	1290	broad.mit.edu	37	chr2	189929404	189929404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccgaggcaaagcagatgCatgaagaaaaagagtataga	12	5	0	5			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189929404	A	A	189929404	1	1	97	0	1	0	0	0	0	0	0	0	3729	725	25	3		3	COL5A2	2	189929404	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	25279	189929404	53269969	126	97244											
SLC40A1	30061	broad.mit.edu	37	chr2	190430008	190430008	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctgatacaaattcaaaaTagttttgatcttcaccaaca	3	9	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190430008	C	C	190430008	1	2	97	0	1	0	0	0	0	0	0	0	14742	1421	49	5		5	SLC40A1	2	190430008	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	500604	190430008	52769365	127	97245											
SLC39A10	57181	broad.mit.edu	37	chr2	196599806	196599806	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattacgagaatgttaccaTgcagctttgcatctgttcct	8	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196599806	C	C	196599806	1	2	97	0	1	0	0	0	0	0	0	0	14727	1479	51	5		5	SLC39A10	2	196599806	3'UTR	SNP	T	TCGA-38-4626-01A-01D-1553-08	6169798	196599806	46599567	128	97246											
CD28	940	broad.mit.edu	37	chr2	204591409	204591409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagcgtacgacaatgcgGtcaaccttagctgcaagtat	10	9	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204591409	T	T	204591409	3	4	97	1	0	0	0	0	1	0	0	0	3023	1261	44	3	112	3	CD28	2	204591409	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	7991603	204591409	38607964	129	97247											
GPR1	2825	broad.mit.edu	37	chr2	207041255	207041255	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaaatgcctactggagatCaggatgcttcgcttcttcac	9	11	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207041255	A	A	207041255	2	1	97	1	0	0	0	0	0	0	0	1	6686	813	29	3		3	GPR1	2	207041255	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	2449846	207041255	36158118	130	97248											
DYTN	391475	broad.mit.edu	37	chr2	207564941	207564941	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcccacgaaagttgggatCtgcaagagacaacctcatct	8	12	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207564941	A	A	207564941	5	1	97	1	0	0	0	0	0	0	1	0	4901	927	32	3	1281	3	DYTN	2	207564941	Splice_Site	SNP	C	TCGA-38-4626-01A-01D-1553-08	523686	207564941	35634432	131	97249											
C2orf80	389073	broad.mit.edu	37	chr2	209049628	209049628	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctttttctgtctctttaaTacacatataacacaaatatg	2	9	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209049628	A	A	209049628	1	1	97	0	1	0	0	0	0	0	0	0	2219	1421	49	5		5	C2orf80	2	209049628	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	1484687	209049628	34149745	132	97250											
MARCH4	57574	broad.mit.edu	37	chr2	217124066	217124066	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgactctcatgaccagctctCggctgctgcctgggggactt	12	13	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217124066	T	T	217124066	3	4	97	1	0	0	0	0	1	0	0	0	9395	884	31	4	34	4	MARCH4	2	217124066	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	8074438	217124066	26075307	133	97251											
PRKAG3	53632	broad.mit.edu	37	chr2	219695055	219695055	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccaagggtgtggtcttgggGaatgtggcctccagcccggt	17	10	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219695055	A	A	219695055	2	1	97	1	0	0	0	0	0	0	0	1	12608	1165	41	4		4	PRKAG3	2	219695055	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	2570989	219695055	23504318	134	97252											
SPEG	10290	broad.mit.edu	37	chr2	220333380	220333380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctggaagatgtggagGtgttggagggccgagctgcc	20	7	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220333380	T	T	220333380	3	4	97	1	0	0	0	0	1	0	0	0	15154	1261	44	3	3277	3	SPEG	2	220333380	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	638325	220333380	22865993	135	97253											
SPHKAP	80309	broad.mit.edu	37	chr2	228882479	228882479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattgacagaatctgggaCatcttcaaggttcatggact	10	7	4	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228882479	A	A	228882479	3	1	97	1	0	0	0	0	1	0	0	0	15166	478	17	3	2035	3	SPHKAP	2	228882479	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	8549099	228882479	14316894	136	97254											
SAG	6295	broad.mit.edu	37	chr2	234227423	234227423	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgtgttggttgatcctgatCttgtgaagggaaagaaaggt	14	4	1	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234227423	A	A	234227423	3	1	97	1	0	0	0	0	1	0	0	0	13919	913	32	3	173	3	SAG	2	234227423	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5344944	234227423	8971950	137	97255											
DNAJB3	414061	broad.mit.edu	37	chr2	234652078	234652078	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccagggagccaaaggaacGaaatcctgtatcaaaagaag	10	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234652078	T	T	234652078	1	4	97	0	1	0	0	0	0	0	0	0	4661	1073	37	3		3	DNAJB3	2	234652078	3'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	424655	234652078	8547295	138	97256											
DNAJB3	414061	broad.mit.edu	37	chr2	234652384	234652384	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatagatatcgcgtttcTtggcgtccgacaacacctcg	10	12	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234652384	C	C	234652384	3	2	97	1	0	0	0	0	1	0	0	0	4661	1609	56	5	262	5	DNAJB3	2	234652384	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	306	234652384	8546989	139	97257											
UGT1A5	54579	broad.mit.edu	37	chr2	234676637	234676637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcaaattaagaaaatgGcttaagcacagctattctaa	8	6	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234676637	T	T	234676637	1	4	97	0	1	0	0	0	0	0	0	0	17074	1218	42	3		3	UGT1A5	2	234676637	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	24253	234676637	8522736	140	97258											
HDAC4	9759	broad.mit.edu	37	chr2	239976512	239976512	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctttgctgtaaaaccttTtctgggagaggatcaagctg	12	7	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239976512	A	A	239976512	3	1	97	1	0	0	0	0	1	0	0	0	7076	1838	64	5	260	5	HDAC4	2	239976512	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	5299875	239976512	3222861	141	97259											
CNTN4	152330	broad.mit.edu	37	chr3	2942376	2942376	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatgcctatagctcaaccTaattggattcaaaaaataaa	6	7	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2942376	A	A	2942376	2	1	97	1	0	0	0	0	0	0	0	1	3675	1509	53	5		5	CNTN4	3	2942376	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08		2942376	195080054	142	97260											
KIF9	64147	broad.mit.edu	37	chr3	47289507	47289507	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgcctctagcctcttaCcaggctgtcatggatagcca	8	13	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47289507	A	A	47289507	5	1	97	1	0	0	0	0	0	0	1	0	8380	521	18	3	1287	3	KIF9	3	47289507	Splice_Site	SNP	C	TCGA-38-4626-01A-01D-1553-08	44347131	47289507	150732923	143	97261											
DNAH1	25981	broad.mit.edu	37	chr3	52394178	52394178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtcagttagcaataaGctggtctctgtccttgaggt	11	7	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52394178	T	T	52394178	1	4	97	0	1	0	0	0	0	0	0	0	4637	986	34	3		3	DNAH1	3	52394178	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5104671	52394178	145628252	144	97262											
OR5K1	26339	broad.mit.edu	37	chr3	98188903	98188903	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccatgattcatgtaggGcttgtatttaggttagtttt	9	5	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98188903	T	T	98188903	2	4	97	1	0	0	0	0	0	0	0	1	11260	1190	42	3		3	OR5K1	3	98188903	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	45794725	98188903	99833527	145	97263											
MYH15	22989	broad.mit.edu	37	chr3	108102463	108102463	+	Frame_Shift_Del	DEL	T	-	-													tttttcccaaactctcttgcTttaattttgagtttattgac							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108102463	-	-	108102463	7	5	97	1	0	1	0	1	0	0	0	0	10128	1606	56	0	43	0	MYH15	3	108102463	Frame_Shift_Del	DEL	T	TCGA-38-4626-01A-01D-1553-08	9913560	108102463	89919967	146	97264											
TIGIT	201633	broad.mit.edu	37	chr3	114014388	114014388	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtgcttcgtcctcttccCtaggaatgatgacaggcaca	9	12	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114014388	G	G	114014388	1	3	97	0	1	0	0	0	0	0	0	0	16025	696	24	4		4	TIGIT	3	114014388	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	5911925	114014388	84008042	147	97265											
IGSF11	152404	broad.mit.edu	37	chr3	118623644	118623644	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccaatgttcctgggctgGgctgcaaaatatatttaaga	10	7	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118623644	A	A	118623644	2	1	97	1	0	0	0	0	0	0	0	1	7668	1246	43	4		4	IGSF11	3	118623644	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	4609256	118623644	79398786	148	97266											
HGD	3081	broad.mit.edu	37	chr3	120347143	120347143	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttcattttaaccaacccCctcctccaatactaccagaa	1	15	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120347143	A	A	120347143	1	1	97	0	1	0	0	0	0	0	0	0	7151	638	22	2		2	HGD	3	120347143	3'UTR	SNP	C	TCGA-38-4626-01A-01D-1553-08	1723499	120347143	77675287	149	97267											
STXBP5L	9515	broad.mit.edu	37	chr3	121126216	121126216	+	Frame_Shift_Del	DEL	G	-	-													agatgaaaatgaaaaatcttGgagaaggaaagtggtaatga							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121126216	-	-	121126216	7	5	97	1	0	1	0	1	0	0	0	0	15475	1357	47	0	2876	0	STXBP5L	3	121126216	Frame_Shift_Del	DEL	G	TCGA-38-4626-01A-01D-1553-08	779073	121126216	76896214	150	97268											
PARP9	83666	broad.mit.edu	37	chr3	122274537	122274537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccaccgaggcccaacagCatggatgatctgtttgcagg	11	12	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122274537	A	A	122274537	3	1	97	1	0	0	0	0	1	0	0	0	11560	710	25	3	2063	3	PARP9	3	122274537	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1148321	122274537	75747893	151	97269											
KALRN	8997	broad.mit.edu	37	chr3	124281951	124281951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaggtaggagaacagagCgggtgggaggcacagaccaa	17	6	0	4	rs143429804		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124281951	A	A	124281951	1	1	97	0	1	0	0	0	0	0	0	0	8045	783	27	3		3	KALRN	3	124281951	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2007414	124281951	73740479	152	97270											
HEG1	57493	broad.mit.edu	37	chr3	124716733	124716733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcaaaccttaaaatctcCtccacttcaaagctcatgtg	3	13	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124716733	A	A	124716733	1	1	97	0	1	0	0	0	0	0	0	0	7111	696	24	2		2	HEG1	3	124716733	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	434782	124716733	73305697	153	97271											
SLC41A3	54946	broad.mit.edu	37	chr3	125731287	125731287	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaataattgaatgaaggaatGaaggaaaggcagggccgggg	16	3	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125731287	A	A	125731287	1	1	97	0	1	0	0	0	0	0	0	0	14745	1305	45	4		4	SLC41A3	3	125731287	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1014554	125731287	72291143	154	97272											
RHO	6010	broad.mit.edu	37	chr3	129251250	129251250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgggcagctcgtcttcacCgtcaaggaggtacgggccgg	15	11	3	0	rs143003934		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129251250	A	A	129251250	2	1	97	1	0	0	0	0	0	0	0	1	13439	639	23	1		1	RHO	3	129251250	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	3519963	129251250	68771180	155	97273											
PIK3R4	30849	broad.mit.edu	37	chr3	130435222	130435222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgcatttaaatgtaagactTtggaagggtgatacaacctg	10	6	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130435222	A	A	130435222	1	1	97	0	1	0	0	0	0	0	0	0	12016	1856	64	5		5	PIK3R4	3	130435222	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	1183972	130435222	67587208	156	97274											
CPNE4	131034	broad.mit.edu	37	chr3	131388394	131388394	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcttccatcgagatgctAaaagatgagagggttgggta	13	5	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131388394	G	G	131388394	1	3	97	0	1	0	0	0	0	0	0	0	3846	377	13	5		5	CPNE4	3	131388394	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	953172	131388394	66634036	157	97275											
PLSCR5	389158	broad.mit.edu	37	chr3	146307686	146307686	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtttacttcatgagagaTttgaattattttatttgtca	8	3	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146307686	G	G	146307686	1	3	97	0	1	0	0	0	0	0	0	0	12208	1508	52	5		5	PLSCR5	3	146307686	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	14919292	146307686	51714744	158	97276											
CLRN1	7401	broad.mit.edu	37	chr3	150690263	150690263	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgagaaccgaaagggccttGctcccaacccacactgcctc	8	16	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150690263	C	C	150690263	3	2	97	1	0	0	0	0	1	0	0	0	3589	1319	46	4	531	4	CLRN1	3	150690263	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	4382577	150690263	47332167	159	97277											
MME	4311	broad.mit.edu	37	chr3	154889844	154889844	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtggcatgatcttttacAtaggtttatatataacctta	7	5	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154889844	G	G	154889844	1	3	97	0	1	0	0	0	0	0	0	0	9738	232	8	5		5	MME	3	154889844	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	4199581	154889844	43132586	160	97278											
PPM1L	151742	broad.mit.edu	37	chr3	160474182	160474182	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccgagacgcttttcctgcTgtgcatcagcttggctctat	9	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160474182	C	C	160474182	3	2	97	1	0	0	0	0	1	0	0	0	12445	1580	55	5	88	5	PPM1L	3	160474182	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	5584338	160474182	37548248	161	97279											
SI	6476	broad.mit.edu	37	chr3	164709251	164709251	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgaaattgtcctctgacGccaatatctttgccctggaa	8	10	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164709251	T	T	164709251	2	4	97	1	0	0	0	0	0	0	0	1	14410	1074	38	3		3	SI	3	164709251	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	4235069	164709251	33313179	162	97280											
SI	6476	broad.mit.edu	37	chr3	164733968	164733968	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaacagcaatatgaaagttTgagttcctcttcactagatc	7	8	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164733968	G	G	164733968	1	3	97	0	1	0	0	0	0	0	0	0	14410	1827	63	5		5	SI	3	164733968	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	24717	164733968	33288462	163	97281											
ZBBX	79740	broad.mit.edu	37	chr3	166960202	166960202	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtatacacatgaggacaAtctttctatatataataaag	5	5	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166960202	G	G	166960202	1	3	97	0	1	0	0	0	0	0	0	0	17643	116	4	5		5	ZBBX	3	166960202	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	2226234	166960202	31062228	164	97282											
HTR3E	285242	broad.mit.edu	37	chr3	183822012	183822012	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctggaacccagaggaatgtGagggcatcacgaagatgagt	15	7	1	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183822012	A	A	183822012	3	1	97	1	0	0	0	0	1	0	0	0	7518	1291	45	4	377	4	HTR3E	3	183822012	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	16861810	183822012	14200418	165	97283											
EIF4G1	1981	broad.mit.edu	37	chr3	184039951	184039951	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatatcgttccttgccctcCttgatgaccgcccatttttg	8	13	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184039951	T	T	184039951	1	4	97	0	1	0	0	0	0	0	0	0	5078	696	24	4		4	EIF4G1	3	184039951	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	217939	184039951	13982479	166	97284											
ZFYVE28	57732	broad.mit.edu	37	chr4	2321937	2321937	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtggaagggccggaacagctCggacatgtcttccaccttgc	13	12	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2321937	G	G	2321937	3	3	97	1	0	0	0	0	1	0	0	0	17796	893	31	4	1928	4	ZFYVE28	4	2321937	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08		2321937	188832339	167	97285											
EVC2	132884	broad.mit.edu	37	chr4	5693029	5693029	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattactccattttcagaaGtcccttgaacttctcttgaa	4	10	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5693029	A	A	5693029	3	1	97	1	0	0	0	0	1	0	0	0	5328	1029	36	4	3520	4	EVC2	4	5693029	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	3371092	5693029	185461247	168	97286											
CPZ	8532	broad.mit.edu	37	chr4	8613721	8613721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggacgtcctgcaggggacCctttccttatctgagccagg	12	13	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8613721	A	A	8613721	1	1	97	0	1	0	0	0	0	0	0	0	3871	638	22	2		2	CPZ	4	8613721	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2920692	8613721	182540555	169	97287											
ANAPC4	29945	broad.mit.edu	37	chr4	25391658	25391658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggggagctttagcatGtagattatatgaaagcagta	12	5	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25391658	T	T	25391658	1	4	97	0	1	0	0	0	0	0	0	0	604	1392	48	3		3	ANAPC4	4	25391658	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	16777937	25391658	165762618	170	97288											
N4BP2	55728	broad.mit.edu	37	chr4	40103677	40103677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatttttgttgttgttattAttcttgttgttgtacagttg	8	2	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40103677	G	G	40103677	1	3	97	0	1	0	0	0	0	0	0	0	10204	464	16	5		5	N4BP2	4	40103677	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	14712019	40103677	151050599	171	97289											
N4BP2	55728	broad.mit.edu	37	chr4	40133635	40133635	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaaataatgtaagtctAcagtagtctctcctaatctg	5	8	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40133635	G	G	40133635	1	3	97	0	1	0	0	0	0	0	0	0	10204	406	14	5		5	N4BP2	4	40133635	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	29958	40133635	151020641	172	97290											
FRYL	285527	broad.mit.edu	37	chr4	48551739	48551739	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttatatagtattggaaagTgataaaaaaaatttcccact	5	4	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48551739	A	A	48551739	1	1	97	0	1	0	0	0	0	0	0	0	6124	1711	59	5		5	FRYL	4	48551739	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	8418104	48551739	142602537	173	97291											
CWH43	80157	broad.mit.edu	37	chr4	49005505	49005505	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatacccttttcactcctccTgccctttctgaggaaatagc	5	14	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49005505	C	C	49005505	1	2	97	0	1	0	0	0	0	0	0	0	4106	1595	55	5		5	CWH43	4	49005505	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	453766	49005505	142148771	174	97292											
CWH43	80157	broad.mit.edu	37	chr4	49034416	49034416	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacatgctatcagatgaaatGatctgacaaatggactgcca	9	8	2	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49034416	T	T	49034416	1	4	97	0	1	0	0	0	0	0	0	0	4106	1305	45	3		3	CWH43	4	49034416	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	28911	49034416	142119860	175	97293											
KDR	3791	broad.mit.edu	37	chr4	55953774	55953774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaggccatatacagtacCtgattcctgctgtgttgtca	9	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55953774	A	A	55953774	3	1	97	1	0	0	0	0	1	0	0	0	8209	695	24	2	424	2	KDR	4	55953774	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	6919358	55953774	135200502	176	97294											
SULT1B1	27284	broad.mit.edu	37	chr4	70599988	70599988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagataaatcatctgcaGtggggggtgggggtaggaga	18	5	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70599988	T	T	70599988	1	4	97	0	1	0	0	0	0	0	0	0	15494	1044	36	3		3	SULT1B1	4	70599988	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	14646214	70599988	120554288	177	97295											
ADAMTS3	9508	broad.mit.edu	37	chr4	73175255	73175255	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttctggagagagaagatgtCaaatgtggctaattttagtg	12	3	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73175255	A	A	73175255	1	1	97	0	1	0	0	0	0	0	0	0	267	841	29	3		3	ADAMTS3	4	73175255	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2575267	73175255	117979021	178	97296											
AFP	174	broad.mit.edu	37	chr4	74315043	74315043	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgaaatatttttctccacAtatttcagttttgttcatga	4	7	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74315043	G	G	74315043	1	3	97	0	1	0	0	0	0	0	0	0	363	232	8	5		5	AFP	4	74315043	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	1139788	74315043	116839233	179	97297											
PPEF2	5470	broad.mit.edu	37	chr4	76797517	76797517	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaggctgagcgggagggctCctctttctctccggtcacca	13	13	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76797517	A	A	76797517	4	1	97	1	0	0	0	0	0	1	0	0	12404	864	30	3	1046	3	PPEF2	4	76797517	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	2482474	76797517	114356759	180	97298											
MRPL1	65008	broad.mit.edu	37	chr4	78830509	78830509	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagggagaactttctcCagaccaaaatagcaacagta	8	8	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78830509	T	T	78830509	4	4	97	1	0	0	0	0	0	1	0	0	9868	595	21	4	786	4	MRPL1	4	78830509	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	2032992	78830509	112323767	181	97299											
ABCG2	9429	broad.mit.edu	37	chr4	89039396	89039396	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggagaagatgattgttcGtccctgcttagacatcctaa	9	8	0	4	rs140207606		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89039396	T	T	89039396	2	4	97	1	0	0	0	0	0	0	0	1	69	1153	40	3		3	ABCG2	4	89039396	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	10208887	89039396	102114880	182	97300											
GRID2	2895	broad.mit.edu	37	chr4	94376951	94376951	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtggatatgtttgcctgtCttgcaccatttgatctctct	8	10	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94376951	A	A	94376951	3	1	97	1	0	0	0	0	1	0	0	0	6838	913	32	3	1726	3	GRID2	4	94376951	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5337555	94376951	96777325	183	97301											
UBE2D3	7323	broad.mit.edu	37	chr4	103723775	103723775	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtcaaaaagaatacaccGccttgatatgggctgtcatt	8	8	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103723775	A	A	103723775	2	1	97	1	0	0	0	0	0	0	0	1	16976	1074	38	4		4	UBE2D3	4	103723775	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	9346824	103723775	87430501	184	97302											
NHEDC1	150159	broad.mit.edu	37	chr4	103910990	103910990	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacattcaatactcctcttaGaggacaagaaatgtatgtct	6	8	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103910990	C	C	103910990	3	2	97	1	0	0	0	0	1	0	0	0	10495	933	33	4	1509	4	NHEDC1	4	103910990	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	187215	103910990	87243286	185	97303											
TBCK	93627	broad.mit.edu	37	chr4	107133844	107133844	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaagaaaatacactcttcTgtgctaataatttctgcttt	4	7	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107133844	C	C	107133844	1	2	97	0	1	0	0	0	0	0	0	0	15758	1595	55	5		5	TBCK	4	107133844	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	3222854	107133844	84020432	186	97304											
ANK2	287	broad.mit.edu	37	chr4	114161742	114161742	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggacttcacagccagggtAtggattgaaatagtttctca	11	7	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114161742	G	G	114161742	1	3	97	0	1	0	0	0	0	0	0	0	621	464	16	5		5	ANK2	4	114161742	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	7027898	114161742	76992534	187	97305											
ANK2	287	broad.mit.edu	37	chr4	114177071	114177071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttagacaagagagccaatCcgaacgccagagccctggta	10	11	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114177071	A	A	114177071	3	1	97	1	0	0	0	0	1	0	0	0	621	855	30	3	1238	3	ANK2	4	114177071	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	15329	114177071	76977205	188	97306											
FGB	2244	broad.mit.edu	37	chr4	155487719	155487719	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatcagaaatagtgttgatGagttaaataacaatgtggaa	9	3	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155487719	T	T	155487719	4	4	97	1	0	0	0	0	0	1	0	0	5888	1291	45	3	395	3	FGB	4	155487719	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	41310648	155487719	35666557	189	97307											
TMEM144	55314	broad.mit.edu	37	chr4	159162701	159162701	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggctatagctacctgctgTtggttcatagcaaatcactc	9	10	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159162701	G	G	159162701	3	3	97	1	0	0	0	0	1	0	0	0	16181	1731	60	5	877	5	TMEM144	4	159162701	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	3674982	159162701	31991575	190	97308											
DDX60L	91351	broad.mit.edu	37	chr4	169300609	169300609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaccatgcaaatatgatGcaagtcctgcaaatttcttt	6	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169300609	A	A	169300609	3	1	97	1	0	0	0	0	1	0	0	0	4412	1319	46	4	880	4	DDX60L	4	169300609	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	10137908	169300609	21853667	191	97309											
MFAP3L	9848	broad.mit.edu	37	chr4	170912688	170912688	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgacatcggtagaaggttcTgcagtttcgggggaatgttc	15	6	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170912688	A	A	170912688	2	1	97	1	0	0	0	0	0	0	0	1	9609	1567	55	5		5	MFAP3L	4	170912688	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	1612079	170912688	20241588	192	97310											
KIAA1712	80817	broad.mit.edu	37	chr4	175220265	175220265	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattggagctgaatctgatGttaagtaatggcaacaggtg	13	4	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175220265	T	T	175220265	1	4	97	0	1	0	0	0	0	0	0	0	8323	1392	48	3		3	KIAA1712	4	175220265	5'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	4307577	175220265	15934011	193	97311											
GLRA3	8001	broad.mit.edu	37	chr4	175603949	175603949	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagaacactactcaacccCtacctgtattgtaatgttta	4	10	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175603949	G	G	175603949	1	3	97	0	1	0	0	0	0	0	0	0	6520	696	24	4		4	GLRA3	4	175603949	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	383684	175603949	15550327	194	97312											
SNX25	83891	broad.mit.edu	37	chr4	186209166	186209166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctttttaaaaatcagGtatcaaattgtagtggaaat	6	4	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186209166	T	T	186209166	3	4	97	1	0	0	0	0	1	0	0	0	15010	1275	44	3	618	3	SNX25	4	186209166	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	10605217	186209166	4945110	195	97313											
SNX25	83891	broad.mit.edu	37	chr4	186284532	186284532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttttttccttctttgttGgttcaggcgctgatggaact	9	9	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186284532	T	T	186284532	1	4	97	0	1	0	0	0	0	0	0	0	15010	1363	47	2		2	SNX25	4	186284532	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	75366	186284532	4869744	196	97314											
F11	2160	broad.mit.edu	37	chr4	187195502	187195502	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactaaaaagcttttgccatCaactttatgccagaatttat	4	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187195502	T	T	187195502	1	4	97	0	1	0	0	0	0	0	0	0	5380	841	29	4		4	F11	4	187195502	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	910970	187195502	3958774	197	97315											
NDUFS6	4726	broad.mit.edu	37	chr5	1814644	1814644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catactccccttcactcccaGtgcctgttctttctgtcctc	4	18	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1814644	T	T	1814644	1	4	97	0	1	0	0	0	0	0	0	0	10391	1044	36	3		3	NDUFS6	5	1814644	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08		1814644	179100616	198	97316											
SEMA5A	9037	broad.mit.edu	37	chr5	9202063	9202063	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaattatttcaagttacAtacacattggtggtaaagat	7	4	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9202063	G	G	9202063	1	3	97	0	1	0	0	0	0	0	0	0	14150	232	8	5		5	SEMA5A	5	9202063	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	7387419	9202063	171713197	199	97317											
MARCH6	10299	broad.mit.edu	37	chr5	10410252	10410252	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaatcctgcctctttcagtGatgctccagtgagtgaactg	9	10	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10410252	A	A	10410252	3	1	97	1	0	0	0	0	1	0	0	0	9397	1304	45	4	1625	4	MARCH6	5	10410252	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1208189	10410252	170505008	200	97318											
CTNND2	1501	broad.mit.edu	37	chr5	11411628	11411628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttcaactatcttcaagcAtaactgccacgtgacttact	4	11	3	1	rs112826687		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11411628	T	T	11411628	1	4	97	0	1	0	0	0	0	0	0	0	4054	232	8	5		5	CTNND2	5	11411628	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	1001376	11411628	169503632	201	97319											
CDH12	1010	broad.mit.edu	37	chr5	21755993	21755993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaacatggttactataagcTtcacttcaaatcttcaagtt	5	8	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21755993	A	A	21755993	1	1	97	0	1	0	0	0	0	0	0	0	3128	1624	56	5		5	CDH12	5	21755993	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	10344365	21755993	159159267	202	97320											
PRDM9	56979	broad.mit.edu	37	chr5	23509927	23509927	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaagactctcccagctcatCagactgagcagcactggctt	8	14	4	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23509927	G	G	23509927	1	3	97	0	1	0	0	0	0	0	0	0	12569	841	29	4		4	PRDM9	5	23509927	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1753934	23509927	157405333	203	97321											
PRDM9	56979	broad.mit.edu	37	chr5	23522766	23522766	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcattgacagctgtgctgcCcatgggccccctacatttgt	9	13	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23522766	G	G	23522766	2	3	97	1	0	0	0	0	0	0	0	1	12569	610	22	4		4	PRDM9	5	23522766	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	12839	23522766	157392494	204	97322											
CDH9	1007	broad.mit.edu	37	chr5	26905971	26905971	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttctttatgcataaacCaatagcaaaactactagtat	3	7	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26905971	T	T	26905971	1	4	97	0	1	0	0	0	0	0	0	0	3147	609	21	4		4	CDH9	5	26905971	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	3383205	26905971	154009289	205	97323											
CDH9	1007	broad.mit.edu	37	chr5	26906121	26906121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcagcgtgatgttcactGtggtggttccagaaaggcct	13	9	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26906121	T	T	26906121	3	4	97	1	0	0	0	0	1	0	0	0	3147	1377	48	3	1643	3	CDH9	5	26906121	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	150	26906121	154009139	206	97324											
NPR3	4883	broad.mit.edu	37	chr5	32786366	32786366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagaataaccattgagaGgcgaacccagcaagaagaaa	9	8	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32786366	T	T	32786366	3	4	97	1	0	0	0	0	1	0	0	0	10691	1000	35	2	1568	2	NPR3	5	32786366	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	5880245	32786366	148128894	207	97325											
TARS	6897	broad.mit.edu	37	chr5	33445440	33445440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttatttagattggtgctgGtgaagagaagcaaaaggaag	14	3	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33445440	T	T	33445440	3	4	97	1	0	0	0	0	1	0	0	0	15678	1261	44	3	74	3	TARS	5	33445440	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	659074	33445440	147469820	208	97326											
ADAMTS12	81792	broad.mit.edu	37	chr5	33546167	33546167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtataaccaagtcttaccagGtcccagttcccagtggccca	8	14	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33546167	T	T	33546167	3	4	97	1	0	0	0	0	1	0	0	0	257	1252	44	3	353	3	ADAMTS12	5	33546167	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	100727	33546167	147369093	209	97327											
RAI14	26064	broad.mit.edu	37	chr5	34823639	34823639	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaactggtagagagggaGaaaggtacagtgattaagcc	14	4	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34823639	T	T	34823639	3	4	97	1	0	0	0	0	1	0	0	0	13116	933	33	3	1811	3	RAI14	5	34823639	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1277472	34823639	146091621	210	97328											
SPEF2	79925	broad.mit.edu	37	chr5	35670143	35670143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccattgattcatctctacCttttttttgtgcgatagtct	5	9	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35670143	A	A	35670143	1	1	97	0	1	0	0	0	0	0	0	0	15153	696	24	2		2	SPEF2	5	35670143	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	846504	35670143	145245117	211	97329											
IL7R	3575	broad.mit.edu	37	chr5	35871067	35871067	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttactgacacaaaaagggtCaaagtgacttgcagaggaga	11	6	1	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35871067	A	A	35871067	1	1	97	0	1	0	0	0	0	0	0	0	7775	841	29	3		3	IL7R	5	35871067	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	200924	35871067	145044193	212	97330											
NIPBL	25836	broad.mit.edu	37	chr5	36955648	36955648	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctctttaatgcacgaataGcagaagaggtgaactgcctt	9	8	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36955648	C	C	36955648	3	2	97	1	0	0	0	0	1	0	0	0	10523	971	34	4	145	4	NIPBL	5	36955648	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1084581	36955648	143959612	213	97331											
NIPBL	25836	broad.mit.edu	37	chr5	37049220	37049220	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgcttttgtagggaagaaAgttgcaaaacaggaagactt	11	5	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37049220	T	T	37049220	3	4	97	1	0	0	0	0	1	0	0	0	10523	69	3	5	6925	5	NIPBL	5	37049220	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	93572	37049220	143866040	214	97332											
RICTOR	253260	broad.mit.edu	37	chr5	39002484	39002485	+	Intron	INS	-	TG	TG													tctaaatcttgttacttggtINStgtgtgtgtgtgtgtgtgta							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	39002485	TG	TG	39002484	6	5	97	0	1	1	1	0	0	0	0	0	13467	1740	60	0		0	RICTOR	5	39002484	Intron	INS	-	TCGA-38-4626-01A-01D-1553-08	1953264	39002484	141912776	215	97333											
FYB	2533	broad.mit.edu	37	chr5	39134975	39134975	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgaaccccttgctgttcTgcccaaccattttccttctg	5	15	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39134975	G	G	39134975	2	3	97	1	0	0	0	0	0	0	0	1	6184	1588	55	5		5	FYB	5	39134975	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	132491	39134975	141780285	216	97334											
HEATR7B2	133558	broad.mit.edu	37	chr5	41058131	41058131	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggagggttgcatgcgggttCtctgattcagttcctttagg	14	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41058131	A	A	41058131	1	1	97	0	1	0	0	0	0	0	0	0	7102	928	32	3		3	HEATR7B2	5	41058131	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1923156	41058131	139857129	217	97335											
MGC42105	167359	broad.mit.edu	37	chr5	43207957	43207957	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgttgcaaatagccttcctGacctccatatgctgtacatg	8	11	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43207957	T	T	43207957	1	4	97	0	1	0	0	0	0	0	0	0	9645	1305	45	3		3	MGC42105	5	43207957	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2149826	43207957	137707303	218	97336											
MRPS27	23107	broad.mit.edu	37	chr5	71530117	71530117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attattcagaataaaacttgCcaccattagctttaaaatat	3	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71530117	A	A	71530117	1	1	97	0	1	0	0	0	0	0	0	0	9932	754	26	3		3	MRPS27	5	71530117	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	28322160	71530117	109385143	219	97337											
ZNF366	167465	broad.mit.edu	37	chr5	71756814	71756814	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtaggggtagggcgtgggCaggaatggagtgggcgttgg	23	3	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71756814	A	A	71756814	2	1	97	1	0	0	0	0	0	0	0	1	17996	697	25	3		3	ZNF366	5	71756814	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	226697	71756814	109158446	220	97338											
FAM169A	26049	broad.mit.edu	37	chr5	74100403	74100403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccatattctccagacataGgtcttttaggttcattttga	7	8	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74100403	T	T	74100403	3	4	97	1	0	0	0	0	1	0	0	0	5532	1000	35	2	1209	2	FAM169A	5	74100403	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2343589	74100403	106814857	221	97339											
IQGAP2	10788	broad.mit.edu	37	chr5	75964638	75964638	+	Frame_Shift_Del	DEL	C	-	-													aagaatatctacttctcaagCtttttaaaactgctctggag							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75964638	-	-	75964638	7	5	97	1	0	1	0	1	0	0	0	0	7885	797	28	0	2902	0	IQGAP2	5	75964638	Frame_Shift_Del	DEL	C	TCGA-38-4626-01A-01D-1553-08	1864235	75964638	104950622	222	97340											
C5orf48	389320	broad.mit.edu	37	chr5	125971690	125971690	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaacaagaaaatgatgtttGatgtgatacacagaagattt	8	4	0	6			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125971690	T	T	125971690	1	4	97	0	1	0	0	0	0	0	0	0	2329	1305	45	3		3	C5orf48	5	125971690	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	50007052	125971690	54943570	223	97341											
MEGF10	84466	broad.mit.edu	37	chr5	126754829	126754829	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagggaattgactgctctacCccatgccctctgggaaccta	9	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126754829	G	G	126754829	2	3	97	1	0	0	0	0	0	0	0	1	9553	610	22	4		4	MEGF10	5	126754829	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	783139	126754829	54160431	224	97342											
MEGF10	84466	broad.mit.edu	37	chr5	126792950	126792950	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtccgagacagttcatcCtcccctaagcaagaggacag	9	14	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126792950	T	T	126792950	2	4	97	1	0	0	0	0	0	0	0	1	9553	668	24	4		4	MEGF10	5	126792950	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	38121	126792950	54122310	225	97343											
SEC24A	10802	broad.mit.edu	37	chr5	134002584	134002584	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagctcctcatgggcccCctccagctggaggcccaccc	11	19	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134002584	T	T	134002584	3	4	97	1	0	0	0	0	1	0	0	0	14107	623	22	4	647	4	SEC24A	5	134002584	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	7209634	134002584	46912676	226	97344											
PCDHA2	56146	broad.mit.edu	37	chr5	140175994	140175994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacggtgtcagcgtgggatgCggacgcgcaggagaacgcgc	18	11	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140175994	T	T	140175994	3	4	97	1	0	0	0	0	1	0	0	0	11618	768	27	4	1447	4	PCDHA2	5	140175994	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	6173410	140175994	40739266	227	97345											
PCDHA3	56145	broad.mit.edu	37	chr5	140181956	140181956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgctcgctgacgcccCacgtccccttcaagctggtg	9	18	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140181956	A	A	140181956	3	1	97	1	0	0	0	0	1	0	0	0	11619	594	21	2	1176	2	PCDHA3	5	140181956	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5962	140181956	40733304	228	97346											
PCDHA9	9752	broad.mit.edu	37	chr5	140229827	140229828	+	Missense_Mutation	DNP	CG	AA	AA													cagtgagcgagatggtgctgCggtcggtgggcgccggcgta							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140229828	AA	AA	140229827	3	1	97	1	0	0	0	0	1	0	0	0	11625	759	27	3	1749	3	PCDHA9	5	140229827	Missense_Mutation	DNP	CG	TCGA-38-4626-01A-01D-1553-08	47871	140229827	40685433	229	97347											
PCDHA11	56138	broad.mit.edu	37	chr5	140249814	140249814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgatcagcgtgtctgacCgtgactcaggtgtcaacgga	12	12	4	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140249814	A	A	140249814	3	1	97	1	0	0	0	0	1	0	0	0	11615	652	23	1	1128	1	PCDHA11	5	140249814	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	19987	140249814	40665446	230	97348											
SLIT3	6586	broad.mit.edu	37	chr5	168201217	168201217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcttgggcacccactGgcacccgaggcagtgtactc	12	15	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168201217	T	T	168201217	1	4	97	0	1	0	0	0	0	0	0	0	14855	1363	47	2		2	SLIT3	5	168201217	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	27951403	168201217	12714043	231	97349											
KCNIP1	30820	broad.mit.edu	37	chr5	169781000	169781000	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgacccttgctttctGtcttgatatggcctggctgg	12	11	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169781000	C	C	169781000	1	2	97	0	1	0	0	0	0	0	0	0	8109	1392	48	4		4	KCNIP1	5	169781000	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1579783	169781000	11134260	232	97350											
RANBP17	64901	broad.mit.edu	37	chr5	170640697	170640697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtatggagagccaacatGtacaactcccatcttgaaac	9	10	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170640697	T	T	170640697	3	4	97	1	0	0	0	0	1	0	0	0	13135	1377	48	3	2376	3	RANBP17	5	170640697	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	859697	170640697	10274563	233	97351											
RANBP17	64901	broad.mit.edu	37	chr5	170679247	170679247	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatattttacaagaagagagAaagcaagaaaaacaaaatgg	9	3	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170679247	G	G	170679247	1	3	97	0	1	0	0	0	0	0	0	0	13135	261	9	5		5	RANBP17	5	170679247	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	38550	170679247	10236013	234	97352											
OR2Y1	134083	broad.mit.edu	37	chr5	180166174	180166174	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccacagagcccccttcacGtccttgtttcttagtgtata	6	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180166174	A	A	180166174	2	1	97	1	0	0	0	0	0	0	0	1	11129	1136	40	4		4	OR2Y1	5	180166174	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	9486927	180166174	749086	235	97353											
MYLK4	340156	broad.mit.edu	37	chr6	2678401	2678401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagccctggtggtaggccCtgcttccttatcatccctac	8	15	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2678401	A	A	2678401	1	1	97	0	1	0	0	0	0	0	0	0	10153	696	24	2		2	MYLK4	6	2678401	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08		2678401	168436666	236	97354											
DCDC2	51473	broad.mit.edu	37	chr6	24178870	24178870	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgctggcctctgatggatCaaaaggaataatggataaaa	10	6	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24178870	A	A	24178870	1	1	97	0	1	0	0	0	0	0	0	0	4318	841	29	3		3	DCDC2	6	24178870	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	21500469	24178870	146936197	237	97355											
TRIM40	135644	broad.mit.edu	37	chr6	30114996	30114996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacactgaaggtgcataccCtgaggccttccccaagggct	10	14	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30114996	A	A	30114996	1	1	97	0	1	0	0	0	0	0	0	0	16639	696	24	2		2	TRIM40	6	30114996	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	5936126	30114996	141000071	238	97356											
BAT2	7916	broad.mit.edu	37	chr6	31603923	31603923	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagggtactagaagctagtgGacttaaggcattgctaggac	13	6	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31603923	T	T	31603923	1	4	97	0	1	0	0	0	0	0	0	0	1324	1189	41	3		3	BAT2	6	31603923	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1488927	31603923	139511144	239	97357											
PKHD1	5314	broad.mit.edu	37	chr6	51890920	51890920	+	Frame_Shift_Del	DEL	C	-	-													ggaccgattgcccacaagtaCccaaaccaaagctgggtccc							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51890920	-	-	51890920	7	5	97	1	0	1	0	1	0	0	0	0	12066	507	18	0	8719	0	PKHD1	6	51890920	Frame_Shift_Del	DEL	C	TCGA-38-4626-01A-01D-1553-08	20286997	51890920	119224147	240	97358											
KLHL31	401265	broad.mit.edu	37	chr6	53519984	53519984	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcccattcaaagcattcagTttgtttagggggctatcttc	9	9	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53519984	C	C	53519984	2	2	97	1	0	0	0	0	0	0	0	1	8456	1722	60	5		5	KLHL31	6	53519984	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	1629064	53519984	117595083	241	97359											
DST	667	broad.mit.edu	37	chr6	56418454	56418454	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggtgctggacatgattctCtagaaataaaattacaagat	8	5	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56418454	G	G	56418454	5	3	97	1	0	0	0	0	0	0	1	0	4823	927	32	4	8420	4	DST	6	56418454	Splice_Site	SNP	C	TCGA-38-4626-01A-01D-1553-08	2898470	56418454	114696613	242	97360											
COL19A1	1310	broad.mit.edu	37	chr6	70851855	70851855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcaatttcctctccaaCcttaatgagattatgaaaat	3	9	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70851855	A	A	70851855	1	1	97	0	1	0	0	0	0	0	0	0	3708	522	18	3		3	COL19A1	6	70851855	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	14433401	70851855	100263212	243	97361											
GJA10	84694	broad.mit.edu	37	chr6	90604267	90604267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggggaaaatctggctgaCcatcctcttcatcttccgaa	9	11	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90604267	A	A	90604267	3	1	97	1	0	0	0	0	1	0	0	0	6465	507	18	3	82	3	GJA10	6	90604267	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	19752412	90604267	80510800	244	97362											
EPHA7	2045	broad.mit.edu	37	chr6	94120814	94120814	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagccagttgttttggttGggctccatgacttggcacac	12	11	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94120814	T	T	94120814	2	4	97	1	0	0	0	0	0	0	0	1	5214	1335	47	2		2	EPHA7	6	94120814	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	3516547	94120814	76994253	245	97363											
EPB41L2	2037	broad.mit.edu	37	chr6	131247615	131247615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatagtttttcagtatttaCcaaatttcacagtgaagtca	6	6	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131247615	A	A	131247615	1	1	97	0	1	0	0	0	0	0	0	0	5195	522	18	3		3	EPB41L2	6	131247615	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	37126801	131247615	39867452	246	97364											
EYA4	2070	broad.mit.edu	37	chr6	133849757	133849757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacttgggtggaccacaCatccctgtgtgtgctgctgc	12	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133849757	T	T	133849757	1	4	97	0	1	0	0	0	0	0	0	0	5374	493	17	4		4	EYA4	6	133849757	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2602142	133849757	37265310	247	97365											
BCLAF1	9774	broad.mit.edu	37	chr6	136597201	136597201	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttctttctttactgttaTtctttcagaatttttgtctt	4	6	5	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136597201	A	A	136597201	3	1	97	1	0	0	0	0	1	0	0	0	1388	1493	52	5	1336	5	BCLAF1	6	136597201	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	2747444	136597201	34517866	248	97366											
CCDC28A	25901	broad.mit.edu	37	chr6	139097279	139097279	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaagagcggaaagtgaagAggaggagtcctaagtctttt	15	4	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139097279	G	G	139097279	3	3	97	1	0	0	0	0	1	0	0	0	2829	295	11	5	298	5	CCDC28A	6	139097279	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	2500078	139097279	32017788	249	97367											
MTHFD1L	25902	broad.mit.edu	37	chr6	151358403	151358403	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgctatttttctaaacactGtgtctcacctacttttgcca	4	12	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151358403	C	C	151358403	1	2	97	0	1	0	0	0	0	0	0	0	10022	1392	48	4		4	MTHFD1L	6	151358403	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	12261124	151358403	19756664	250	97368											
SYNE1	23345	broad.mit.edu	37	chr6	152725441	152725441	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctcaatgctttgtttttAacttcagactgccaaaaggg	7	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152725441	C	C	152725441	2	2	97	1	0	0	0	0	0	0	0	1	15564	349	13	5		5	SYNE1	6	152725441	Silent	SNP	A	TCGA-38-4626-01A-01D-1553-08	1367038	152725441	18389626	251	97369											
RBM16	22828	broad.mit.edu	37	chr6	155152133	155152133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagccttgttataccaggcGgttctgttgccagcaatctt	10	10	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155152133	T	T	155152133	3	4	97	1	0	0	0	0	1	0	0	0	13226	1116	39	1	2292	1	RBM16	6	155152133	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2426692	155152133	15962934	252	97370											
IGF2R	3482	broad.mit.edu	37	chr6	160469622	160469622	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttgccctcctaattccatGacttagtgggaggaggtggt	12	9	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160469622	T	T	160469622	1	4	97	0	1	0	0	0	0	0	0	0	7646	1305	45	3		3	IGF2R	6	160469622	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5317489	160469622	10645445	253	97371											
MAP3K4	4216	broad.mit.edu	37	chr6	161508882	161508882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcttctgaccaagcacGgtgatcgagcccgtgattca	10	12	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161508882	T	T	161508882	3	4	97	1	0	0	0	0	1	0	0	0	9344	1116	39	1	2757	1	MAP3K4	6	161508882	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1039260	161508882	9606185	254	97372											
PARK2	5071	broad.mit.edu	37	chr6	162990380	162990380	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagctgtccaagctggagGctgccctgcaacaggccatg	12	14	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162990380	A	A	162990380	1	1	97	0	1	0	0	0	0	0	0	0	11543	1218	42	4		4	PARK2	6	162990380	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1481498	162990380	8124687	255	97373											
PDE10A	10846	broad.mit.edu	37	chr6	165792703	165792703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgtgattgattattaagGtttagtgatccggtctggta	11	4	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165792703	T	T	165792703	3	4	97	1	0	0	0	0	1	0	0	0	11724	1252	44	3	424	3	PDE10A	6	165792703	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2802323	165792703	5322364	256	97374											
CCR6	1235	broad.mit.edu	37	chr6	167417725	167417725	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttctgctatttttttgtGcacttgtattttaacttctt	4	7	2	0	rs41269603	byFrequency;by1000genomes	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167417725	T	T	167417725	1	4	97	0	1	0	0	0	0	0	0	0	2975	1334	46	3		3	CCR6	6	167417725	5'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	1625022	167417725	3697342	257	97375											
ZFAND2A	90637	broad.mit.edu	37	chr7	1197229	1197229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgctagtccctaccataCcagcaagacagtgcagcttc	8	15	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1197229	A	A	1197229	1	1	97	0	1	0	0	0	0	0	0	0	17753	522	18	3		3	ZFAND2A	7	1197229	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08		1197229	157941434	258	97376											
CARD11	84433	broad.mit.edu	37	chr7	2951989	2951989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccttgggttgaccatccCactcaggccctgcctgccac	10	17	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2951989	A	A	2951989	1	1	97	0	1	0	0	0	0	0	0	0	2671	609	21	2		2	CARD11	7	2951989	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1754760	2951989	156186674	259	97377											
SDK1	221935	broad.mit.edu	37	chr7	3377960	3377960	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagagtctacgatgttactCagcatgctgttggcattgta	10	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3377960	G	G	3377960	1	3	97	0	1	0	0	0	0	0	0	0	14081	841	29	4		4	SDK1	7	3377960	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	425971	3377960	155760703	260	97378											
TMEM195	392636	broad.mit.edu	37	chr7	15430503	15430503	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taataagaacaccagcataaTttttgtctatgcaataacga	5	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15430503	A	A	15430503	3	1	97	1	0	0	0	0	1	0	0	0	16240	1493	52	5	661	5	TMEM195	7	15430503	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	12052543	15430503	143708160	261	97379											
FERD3L	222894	broad.mit.edu	37	chr7	19184745	19184745	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagacacctcttccgcgctCctcttcctcctcctcttctc	5	20	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19184745	A	A	19184745	4	1	97	1	0	0	0	0	0	1	0	0	5873	864	30	3	263	3	FERD3L	7	19184745	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3754242	19184745	139953918	262	97380											
HOXA2	3199	broad.mit.edu	37	chr7	27141063	27141063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcgatcccccgccgctgCcatcggcgatttccagggat	12	17	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27141063	A	A	27141063	3	1	97	1	0	0	0	0	1	0	0	0	7359	739	26	3	721	3	HOXA2	7	27141063	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	7956318	27141063	131997600	263	97381											
BBS9	27241	broad.mit.edu	37	chr7	33407245	33407245	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggaaatcaaggtgaatatAttatagctcacacatggagt	9	5	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33407245	T	T	33407245	1	4	97	0	1	0	0	0	0	0	0	0	1347	464	16	5		5	BBS9	7	33407245	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	6266182	33407245	125731418	264	97382											
AOAH	313	broad.mit.edu	37	chr7	36655979	36655979	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgattactgccaaaatTacttaccaaagacatctgcg	7	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36655979	A	A	36655979	1	1	97	0	1	0	0	0	0	0	0	0	728	1769	61	5		5	AOAH	7	36655979	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	3248734	36655979	122482684	265	97383											
AMPH	273	broad.mit.edu	37	chr7	38431292	38431292	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactggaaaaccaaaggcttGagcaaaagggccttaaagca	10	8	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38431292	T	T	38431292	1	4	97	0	1	0	0	0	0	0	0	0	588	1305	45	3		3	AMPH	7	38431292	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1775313	38431292	120707371	266	97384											
AMPH	273	broad.mit.edu	37	chr7	38500865	38500865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcatggacataccagcCctgaaccaggcacttacctg	7	14	1	1	rs145887073	by1000genomes	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38500865	A	A	38500865	1	1	97	0	1	0	0	0	0	0	0	0	588	638	22	2		2	AMPH	7	38500865	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	69573	38500865	120637798	267	97385											
POU6F2	11281	broad.mit.edu	37	chr7	39247049	39247049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgtgatgccgggaggccCcccagccctcaaccagccaa	12	18	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39247049	A	A	39247049	3	1	97	1	0	0	0	0	1	0	0	0	12381	623	22	2	355	2	POU6F2	7	39247049	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	746184	39247049	119891614	268	97386											
HECW1	23072	broad.mit.edu	37	chr7	43283497	43283497	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgcgcgtacacgtggtGggtcattatgctgctgcacc	13	10	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43283497	T	T	43283497	1	4	97	0	1	0	0	0	0	0	0	0	7109	1363	47	2		2	HECW1	7	43283497	5'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	4036448	43283497	115855166	269	97387											
HECW1	23072	broad.mit.edu	37	chr7	43531769	43531769	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaacatcaacatgagtcAttgccactgggtatgtatca	8	10	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43531769	G	G	43531769	2	3	97	1	0	0	0	0	0	0	0	1	7109	204	8	5		5	HECW1	7	43531769	Silent	SNP	A	TCGA-38-4626-01A-01D-1553-08	248272	43531769	115606894	270	97388											
CAMK2B	816	broad.mit.edu	37	chr7	44281964	44281964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggaaacagcgccccggCcgggcctgaagctccctctc	12	16	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44281964	A	A	44281964	1	1	97	0	1	0	0	0	0	0	0	0	2626	754	26	3		3	CAMK2B	7	44281964	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	750195	44281964	114856699	271	97389											
RAMP3	10268	broad.mit.edu	37	chr7	45222663	45222663	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggccaaatgggactgtacCcaagccaccccacccatctt	8	16	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45222663	G	G	45222663	1	3	97	0	1	0	0	0	0	0	0	0	13131	638	22	4		4	RAMP3	7	45222663	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	940699	45222663	113916000	272	97390											
RAMP3	10268	broad.mit.edu	37	chr7	45222926	45222926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagacgaggttctcatccCgctgatcgttatacccgtcg	9	15	1	2	rs146295145		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45222926	T	T	45222926	3	4	97	1	0	0	0	0	1	0	0	0	13131	652	23	4	372	4	RAMP3	7	45222926	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	263	45222926	113915737	273	97391											
ABCA13	154664	broad.mit.edu	37	chr7	48564093	48564093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctgtacaactctagtaGctgatctgcttgtgttagtc	9	9	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48564093	T	T	48564093	1	4	97	0	1	0	0	0	0	0	0	0	31	986	34	3		3	ABCA13	7	48564093	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3341167	48564093	110574570	274	97392											
ZNF479	90827	broad.mit.edu	37	chr7	57188064	57188064	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccacattcttcacaggcaTagggtttctctctagtatga	9	10	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57188064	C	C	57188064	3	2	97	1	0	0	0	0	1	0	0	0	18060	1406	49	5	520	5	ZNF479	7	57188064	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	8623971	57188064	101950599	275	97393											
HGF	3082	broad.mit.edu	37	chr7	81355131	81355131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagaagtagatcttatgCtgtaaaatgtgtcctccctt	8	8	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81355131	A	A	81355131	1	1	97	0	1	0	0	0	0	0	0	0	7152	812	28	3		3	HGF	7	81355131	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	24167067	81355131	77783532	276	97394											
PCLO	27445	broad.mit.edu	37	chr7	82583786	82583786	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgagtaggtcaaaatcagCgattcatgggcaattatctc	9	9	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82583786	A	A	82583786	2	1	97	1	0	0	0	0	0	0	0	1	11677	755	27	3		3	PCLO	7	82583786	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	1228655	82583786	76554877	277	97395											
CROT	54677	broad.mit.edu	37	chr7	87005257	87005257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccacatgtaacaccagaGgattattctgaggtacttaa	8	8	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87005257	T	T	87005257	3	4	97	1	0	0	0	0	1	0	0	0	3926	991	35	2	978	2	CROT	7	87005257	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	4421471	87005257	72133406	278	97396											
ABCB1	5243	broad.mit.edu	37	chr7	87179543	87179543	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggactgttgtgctcttccCacagccactgtttccaacca	7	15	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87179543	T	T	87179543	3	4	97	1	0	0	0	0	1	0	0	0	40	594	21	4	2616	4	ABCB1	7	87179543	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	174286	87179543	71959120	279	97397											
SAMD9	54809	broad.mit.edu	37	chr7	92731291	92731291	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gattttgacagtgcattgttCtaagagaaaagtatattcgt	9	4	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92731291	A	A	92731291	4	1	97	1	0	0	0	0	0	1	0	0	13937	922	32	3	653	3	SAMD9	7	92731291	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5551748	92731291	66407372	280	97398											
HEPACAM2	253012	broad.mit.edu	37	chr7	92826772	92826773	+	Intron	INS	-	T	T													acacatatatacagcttcaaINSttttttttttgtaattttaa							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92826773	T	T	92826772	6	5	97	0	1	1	1	0	0	0	0	0	7120	116	4	0		0	HEPACAM2	7	92826772	Intron	INS	-	TCGA-38-4626-01A-01D-1553-08	95481	92826772	66311891	281	97399											
DYNC1I1	1780	broad.mit.edu	37	chr7	95616384	95616384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagggatgttcaggctggaGccaatctttctttcaatcgt	10	9	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95616384	T	T	95616384	3	4	97	1	0	0	0	0	1	0	0	0	4882	971	34	3	841	3	DYNC1I1	7	95616384	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2789612	95616384	63522279	282	97400											
SLC25A13	10165	broad.mit.edu	37	chr7	95822310	95822310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttataattccttatttaCtgagttaaaccacttcatta	2	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95822310	A	A	95822310	1	1	97	0	1	0	0	0	0	0	0	0	14589	580	20	3		3	SLC25A13	7	95822310	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	205926	95822310	63316353	283	97401											
LMTK2	22853	broad.mit.edu	37	chr7	97822649	97822649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagctcaattctaaagacGcagcaaaagaagcaggcttg	9	9	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97822649	T	T	97822649	3	4	97	1	0	0	0	0	1	0	0	0	8933	1087	38	3	2914	3	LMTK2	7	97822649	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2000339	97822649	61316014	284	97402											
CYP3A43	64816	broad.mit.edu	37	chr7	99445237	99445237	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggaagtaagaaaataaGgtgatttataattagaaact	8	2	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99445237	A	A	99445237	1	1	97	0	1	0	0	0	0	0	0	0	4212	1015	35	4		4	CYP3A43	7	99445237	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1622588	99445237	59693426	285	97403											
MUC17	140453	broad.mit.edu	37	chr7	100677757	100677757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaccacttctactgaagcCagttcacctcctcccactgc	5	17	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100677757	A	A	100677757	2	1	97	1	0	0	0	0	0	0	0	1	10068	581	21	2		2	MUC17	7	100677757	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	1232520	100677757	58460906	286	97404											
SH2B2	10603	broad.mit.edu	37	chr7	101952177	101952177	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagctgacatccagggctgCgtggaccccgggtgagtgtc	16	11	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101952177	T	T	101952177	2	4	97	1	0	0	0	0	0	0	0	1	14341	776	27	4		4	SH2B2	7	101952177	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	1274420	101952177	57186486	287	97405											
FBXL13	222235	broad.mit.edu	37	chr7	102518756	102518756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaatactaatgatatgatGtaaaagactgttttatcata	5	4	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102518756	T	T	102518756	1	4	97	0	1	0	0	0	0	0	0	0	5766	1392	48	3		3	FBXL13	7	102518756	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	566579	102518756	56619907	288	97406											
RELN	5649	broad.mit.edu	37	chr7	103214661	103214661	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgggcacctgttatcttGtaccacagagggctgagctt	11	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103214661	T	T	103214661	4	4	97	1	0	0	0	0	0	1	0	0	13328	1372	48	3	6137	3	RELN	7	103214661	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	695905	103214661	55924002	289	97407											
RELN	5649	broad.mit.edu	37	chr7	103301849	103301849	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagtaaaacctcaggttcCcataaccggtagtgtccatg	8	11	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103301849	T	T	103301849	3	4	97	1	0	0	0	0	1	0	0	0	13328	623	22	4	9183	4	RELN	7	103301849	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	87188	103301849	55836814	290	97408											
ANKRD7	56311	broad.mit.edu	37	chr7	117874739	117874740	+	Intron	INS	-	T	T													aattggttactcatctactcINSttgttgcattaacaggcagt							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117874740	T	T	117874739	6	5	97	0	1	1	1	0	0	0	0	0	686	928	32	0		0	ANKRD7	7	117874739	Intron	INS	-	TCGA-38-4626-01A-01D-1553-08	14572890	117874739	41263924	291	97409											
PAX4	5078	broad.mit.edu	37	chr7	127255550	127255550	+	Missense_Mutation	SNP	C	A	A													aggcaggggccggccattcaCaaagagccccccaagctggt							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127255550	A	A	127255550	3	1	97	1	0	0	0	0	1	0	0	0	11575	478	17	3	1042	3	PAX4	7	127255550	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	9380811	127255550	31883113	292	97410	425	2									
PAX4	5078	broad.mit.edu	37	chr7	127255560	127255560	+	Silent	SNP	C	T	T													cggccattcacaaagagcccCccaagctggttcatgctgct							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127255560	T	T	127255560	2	4	97	1	0	0	0	0	0	0	0	1	11575	610	22	4		4	PAX4	7	127255560	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	10	127255560	31883103	293	97411	425	2									
LEP	3952	broad.mit.edu	37	chr7	127892140	127892140	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctatgtccaagctgtgccCatccaaaaagtccaagatga	7	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127892140	T	T	127892140	2	4	97	1	0	0	0	0	0	0	0	1	8799	581	21	4		4	LEP	7	127892140	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	636580	127892140	31246523	294	97412											
FLNC	2318	broad.mit.edu	37	chr7	128493588	128493588	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatcaactgtgaggacatgGaggacgggacatgcaaagtc	13	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128493588	T	T	128493588	4	4	97	1	0	0	0	0	0	1	0	0	5993	1175	41	3	6424	3	FLNC	7	128493588	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	601448	128493588	30645075	295	97413											
MGAM	8972	broad.mit.edu	37	chr7	141758016	141758016	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctagttgattggccggcCtgtgatggtaccttactggt	12	8	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141758016	T	T	141758016	3	4	97	1	0	0	0	0	1	0	0	0	9634	681	24	4	3825	4	MGAM	7	141758016	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	13264428	141758016	17380647	296	97414											
TRYX3	136541	broad.mit.edu	37	chr7	141955355	141955355	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaggcttatcactcacGgtaaattgcagtgtgcagct	10	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141955355	C	C	141955355	3	2	97	1	0	0	0	0	1	0	0	0	16729	1130	39	4	562	4	TRYX3	7	141955355	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	197339	141955355	17183308	297	97415											
TRPV6	55503	broad.mit.edu	37	chr7	142574936	142574936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactacggcggaaggcagtgCctgtggctctggcagagaca	16	10	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142574936	A	A	142574936	3	1	97	1	0	0	0	0	1	0	0	0	16725	739	26	3	1779	3	TRPV6	7	142574936	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	619581	142574936	16563727	298	97416											
KEL	3792	broad.mit.edu	37	chr7	142651373	142651373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgaagtgatggagattgaCaaggaagagtgttcttgcac	14	5	1	5			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142651373	A	A	142651373	3	1	97	1	0	0	0	0	1	0	0	0	8212	477	17	3	1424	3	KEL	7	142651373	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	76437	142651373	16487290	299	97417											
TAS2R39	259285	broad.mit.edu	37	chr7	142880399	142880399	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccaacatttgcatctctaGatgtagagctaagaattctg	7	8	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142880399	C	C	142880399	1	2	97	0	1	0	0	0	0	0	0	0	15695	957	33	4		4	TAS2R39	7	142880399	5'Flank	SNP	G	TCGA-38-4626-01A-01D-1553-08	229026	142880399	16258264	300	97418											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092834	147092834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaggaagccgggaagtttCgcgaatgtcagcattgacat	12	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147092834	A	A	147092834	3	1	97	1	0	0	0	0	1	0	0	0	3679	883	31	3	1670	3	CNTNAP2	7	147092834	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	4212435	147092834	12045829	301	97419											
GIMAP8	155038	broad.mit.edu	37	chr7	150164216	150164216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatttgggggatgacttgCtgcaagatttcattgaaaaa	11	4	1	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150164216	A	A	150164216	3	1	97	1	0	0	0	0	1	0	0	0	6449	796	28	3	432	3	GIMAP8	7	150164216	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3071382	150164216	8974447	302	97420											
GIMAP2	26157	broad.mit.edu	37	chr7	150390208	150390208	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttttattttgtattcaGttgtttctcagattgataat	7	3	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150390208	C	C	150390208	3	2	97	1	0	0	0	0	1	0	0	0	6444	1020	36	4	840	4	GIMAP2	7	150390208	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	225992	150390208	8748455	303	97421											
ATG9B	285973	broad.mit.edu	37	chr7	150720844	150720844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaggggagagtgtcagcCcctggcatgtgatcaattct	13	9	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150720844	A	A	150720844	1	1	97	0	1	0	0	0	0	0	0	0	1107	638	22	2		2	ATG9B	7	150720844	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	330636	150720844	8417819	304	97422											
MLL3	58508	broad.mit.edu	37	chr7	151891053	151891053	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtacccacatatatacacaTgtgtgtgaatataatgtaga	7	6	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151891053	A	A	151891053	1	1	97	0	1	0	0	0	0	0	0	0	9715	1479	51	5		5	MLL3	7	151891053	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	1170209	151891053	7247610	305	97423											
ESYT2	57488	broad.mit.edu	37	chr7	158580836	158580836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaaacattctgcagggcCgcttaacgcaaggagtttgc	11	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158580836	A	A	158580836	1	1	97	0	1	0	0	0	0	0	0	0	5307	667	23	1		1	ESYT2	7	158580836	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	6689783	158580836	557827	306	97424											
CSMD1	64478	broad.mit.edu	37	chr8	2855612	2855612	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgccctgcagcaaatagccCgtgttgcaggtgaaattcac	10	12	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2855612	A	A	2855612	2	1	97	1	0	0	0	0	0	0	0	1	3978	639	23	1		1	CSMD1	8	2855612	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08		2855612	143508410	307	97425											
TNKS	8658	broad.mit.edu	37	chr8	9623218	9623218	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagattcaaaaagttgtcaAcaagaagttgagggagcggt	12	4	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9623218	T	T	9623218	3	4	97	1	0	0	0	0	1	0	0	0	16442	43	2	5	3558	5	TNKS	8	9623218	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	6767606	9623218	136740804	308	97426											
SOX7	83595	broad.mit.edu	37	chr8	10583456	10583456	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccccaggagttccaccTggctcagttgatccagggcg	12	14	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10583456	A	A	10583456	3	1	97	1	0	0	0	0	1	0	0	0	15070	1580	55	5	211	5	SOX7	8	10583456	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	960238	10583456	135780566	309	97427											
EBF2	64641	broad.mit.edu	37	chr8	25716008	25716008	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggagagatgctgcttgtgTtgcggatgtacccttggcaa	15	8	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25716008	C	C	25716008	3	2	97	1	0	0	0	0	1	0	0	0	4921	1725	60	5	384	5	EBF2	8	25716008	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	15132552	25716008	120648014	310	97428											
EXTL3	2137	broad.mit.edu	37	chr8	28573840	28573840	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgccgcatccgggagtcGgtgagtgaagagctcctgca	15	11	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28573840	T	T	28573840	2	4	97	1	0	0	0	0	0	0	0	1	5370	1103	39	1		1	EXTL3	8	28573840	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	2857832	28573840	117790182	311	97429											
KCNU1	157855	broad.mit.edu	37	chr8	36768544	36768544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccccagccatcaagcaacCagactttggtagacacagaa	7	14	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36768544	A	A	36768544	3	1	97	1	0	0	0	0	1	0	0	0	8163	595	21	2	2514	2	KCNU1	8	36768544	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	8194704	36768544	109595478	312	97430											
BRF2	55290	broad.mit.edu	37	chr8	37704488	37704488	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaatctgcatacaacagCgtgcagatggcccccattgt	8	13	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37704488	A	A	37704488	2	1	97	1	0	0	0	0	0	0	0	1	1520	755	27	3		3	BRF2	8	37704488	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	935944	37704488	108659534	313	97431											
ADAM18	8749	broad.mit.edu	37	chr8	39468320	39468320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttagttagctgttgagtaGgaatattaaattttatgtat	8	1	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39468320	T	T	39468320	1	4	97	0	1	0	0	0	0	0	0	0	239	1015	35	2		2	ADAM18	8	39468320	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1763832	39468320	106895702	314	97432											
ANK1	286	broad.mit.edu	37	chr8	41542220	41542220	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattctccactgtgggcgcaGaagagagatgcacgttactc	12	10	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41542220	T	T	41542220	1	4	97	0	1	0	0	0	0	0	0	0	620	957	33	3		3	ANK1	8	41542220	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2073900	41542220	104821802	315	97433											
C8orf22	492307	broad.mit.edu	37	chr8	49987813	49987814	+	3'UTR	INS	-	A	A													catgaacagttgattctgacINSaatcaagatcctctgcctgc							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49987814	A	A	49987813	6	5	97	0	1	1	1	0	0	0	0	0	2444	493	17	0		0	C8orf22	8	49987813	3'UTR	INS	-	TCGA-38-4626-01A-01D-1553-08	8445593	49987813	96376209	316	97434											
MYBL1	4603	broad.mit.edu	37	chr8	67492485	67492485	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgctgagcagacacaggCtgattttcatccatactgta	8	10	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67492485	T	T	67492485	2	4	97	1	0	0	0	0	0	0	0	1	10103	796	28	4		4	MYBL1	8	67492485	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	17504672	67492485	78871537	317	97435											
CSPP1	79848	broad.mit.edu	37	chr8	68026234	68026234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaattaactaaattcaGttctcataaagtgtaaattc	3	5	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68026234	T	T	68026234	1	4	97	0	1	0	0	0	0	0	0	0	3996	1044	36	3		3	CSPP1	8	68026234	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	533749	68026234	78337788	318	97436											
ZFHX4	79776	broad.mit.edu	37	chr8	77764798	77764798	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaaggtgaaggactcaaaGaaggcaaagacacaaagaag	13	5	1	5			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77764798	T	T	77764798	4	4	97	1	0	0	0	0	0	1	0	0	17761	943	33	3	5675	3	ZFHX4	8	77764798	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	9738564	77764798	68599224	319	97437											
MATN2	4147	broad.mit.edu	37	chr8	99015917	99015917	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgtgcactgaacaaaccGggctgtgagcatgagtgcgt	13	9	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99015917	A	A	99015917	2	1	97	1	0	0	0	0	0	0	0	1	9426	1103	39	4		4	MATN2	8	99015917	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	21251119	99015917	47348105	320	97438											
TRPS1	7227	broad.mit.edu	37	chr8	116617157	116617157	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaattgcagaatttacagcGgaaatacttggtgttccctt	9	7	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116617157	C	C	116617157	3	2	97	1	0	0	0	0	1	0	0	0	16718	1116	39	4	2861	4	TRPS1	8	116617157	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	17601240	116617157	29746865	321	97439											
ZHX1	11244	broad.mit.edu	37	chr8	124266616	124266616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagatgtaagcactgattaCtctttgaatttctctggttg	9	6	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124266616	A	A	124266616	3	1	97	1	0	0	0	0	1	0	0	0	17801	565	20	3	1054	3	ZHX1	8	124266616	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	7649459	124266616	22097406	322	97440											
KHDRBS3	10656	broad.mit.edu	37	chr8	136555068	136555068	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatgttatattatgtgctCttatattatccactgtattc	4	7	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136555068	G	G	136555068	1	3	97	0	1	0	0	0	0	0	0	0	8218	928	32	4		4	KHDRBS3	8	136555068	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	12288452	136555068	9808954	323	97441											
PTPRD	5789	broad.mit.edu	37	chr9	8484412	8484412	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaataaaaaaaaaatctgGttatcagagaggcaaaatat	6	5	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8484412	C	C	8484412	1	2	97	0	1	0	0	0	0	0	0	0	12907	1276	44	4		4	PTPRD	9	8484412	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08		8484412	132729019	324	97442											
NFIB	4781	broad.mit.edu	37	chr9	14125574	14125574	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttttgctccgtccctaagGgggttaggccctacagacaa	10	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14125574	A	A	14125574	1	1	97	0	1	0	0	0	0	0	0	0	10466	1247	43	4		4	NFIB	9	14125574	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5641162	14125574	127087857	325	97443											
FREM1	158326	broad.mit.edu	37	chr9	14797460	14797460	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagatttcatagaattgtaTagaaatctgaaagggactct	9	4	3	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797460	A	A	14797460	1	1	97	0	1	0	0	0	0	0	0	0	6104	1421	49	5		5	FREM1	9	14797460	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	671886	14797460	126415971	326	97444											
DENND4C	55667	broad.mit.edu	37	chr9	19369931	19369931	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattcagcacaataatgttcTtaaacccatcaacctacttt	2	11	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19369931	G	G	19369931	3	3	97	1	0	0	0	0	1	0	0	0	4475	1609	56	5	4868	5	DENND4C	9	19369931	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	4572471	19369931	121843500	327	97445											
TOPORS	10210	broad.mit.edu	37	chr9	32543811	32543811	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatctgccgtagttggccTccttactgcaatctgtctca	7	13	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32543811	A	A	32543811	3	1	97	1	0	0	0	0	1	0	0	0	16494	1550	54	5	2429	5	TOPORS	9	32543811	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	13173880	32543811	108669620	328	97446											
UNC13B	10497	broad.mit.edu	37	chr9	35396703	35396703	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctcggggactgcctgttCaggtaccaccgtagacaaag	12	11	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35396703	T	T	35396703	1	4	97	0	1	0	0	0	0	0	0	0	17111	841	29	4		4	UNC13B	9	35396703	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2852892	35396703	105816728	329	97447											
UNC13B	10497	broad.mit.edu	37	chr9	35403960	35403960	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggattttatctcagaggaGcaatgacgaggtggcccgag	14	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35403960	T	T	35403960	3	4	97	1	0	0	0	0	1	0	0	0	17111	971	34	3	4860	3	UNC13B	9	35403960	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	7257	35403960	105809471	330	97448											
PAX5	5079	broad.mit.edu	37	chr9	36923304	36923305	+	Intron	DEL	TC	-	-													cttcccaccacacactcctaTctctctctctctccctcact							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36923305	-	-	36923304	6	5	97	0	1	1	0	1	0	0	0	0	11576	1450	50	0		0	PAX5	9	36923304	Intron	DEL	TC	TCGA-38-4626-01A-01D-1553-08	1519344	36923304	104290127	331	97449											
FRMPD1	22844	broad.mit.edu	37	chr9	37732490	37732490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataacttgctggcccctgGccaggagggccagatgccac	12	13	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37732490	T	T	37732490	1	4	97	0	1	0	0	0	0	0	0	0	6117	1218	42	3		3	FRMPD1	9	37732490	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	809186	37732490	103480941	332	97450											
TMC1	117531	broad.mit.edu	37	chr9	75435733	75435733	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagtaaagactcaaaactGagcagagttctgttttcttt	9	6	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75435733	T	T	75435733	1	4	97	0	1	0	0	0	0	0	0	0	16107	1305	45	3		3	TMC1	9	75435733	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	37703243	75435733	65777698	333	97451											
FAM75C1	441452	broad.mit.edu	37	chr9	90536768	90536768	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccttgagctgtgtactcAgcaggtgctggaagcccata	11	11	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90536768	T	T	90536768	3	4	97	1	0	0	0	0	1	0	0	0	5676	188	7	5	1960	5	FAM75C1	9	90536768	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	15101035	90536768	50676663	334	97452											
ROR2	4920	broad.mit.edu	37	chr9	94486066	94486066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacggtgctctgggcccCatcttctggggcgttctgtg	14	13	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94486066	A	A	94486066	3	1	97	1	0	0	0	0	1	0	0	0	13638	594	21	2	125	2	ROR2	9	94486066	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3949298	94486066	46727365	335	97453											
OGN	4969	broad.mit.edu	37	chr9	95163438	95163438	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgtaattgaagacttttCtcattgggtattatcacagt	7	5	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95163438	T	T	95163438	2	4	97	1	0	0	0	0	0	0	0	1	10941	912	32	4		4	OGN	9	95163438	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	677372	95163438	46049993	336	97454											
ECM2	1842	broad.mit.edu	37	chr9	95272247	95272247	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaagttcttctaatgtagAtggcaattgtgaaggaatct	9	4	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95272247	G	G	95272247	3	3	97	1	0	0	0	0	1	0	0	0	4938	333	12	5	879	5	ECM2	9	95272247	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	108809	95272247	45941184	337	97455											
C9orf102	375748	broad.mit.edu	37	chr9	98678023	98678023	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagctagagtaacagaagttAtgaaagctttgaaatgtaat	9	3	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98678023	T	T	98678023	3	4	97	1	0	0	0	0	1	0	0	0	2471	449	16	5	913	5	C9orf102	9	98678023	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	3405776	98678023	42535408	338	97456											
TBC1D2	55357	broad.mit.edu	37	chr9	100997605	100997605	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgcagatcgtgagaagaTagaggccttgagaaatgagc	15	5	0	6			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100997605	A	A	100997605	1	1	97	0	1	0	0	0	0	0	0	0	15727	1421	49	5		5	TBC1D2	9	100997605	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	2319582	100997605	40215826	339	97457											
COL15A1	1306	broad.mit.edu	37	chr9	101797630	101797630	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcattcttgctccttccccAggataccgaaggctctggaa	8	14	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101797630	T	T	101797630	5	4	97	1	0	0	0	0	0	0	1	0	3704	202	7	5	2293	5	COL15A1	9	101797630	Splice_Site	SNP	A	TCGA-38-4626-01A-01D-1553-08	800025	101797630	39415801	340	97458											
C9orf5	23731	broad.mit.edu	37	chr9	111870721	111870721	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaaggaacccacctaaatgaa					rs55890841		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111870721	-	-	111870721	6	5	97	0	1	1	0	1	0	0	0	0	2512	957	33	0		0	C9orf5	9	111870721	Intron	DEL	G	TCGA-38-4626-01A-01D-1553-08	10073091	111870721	29342710	341	97459											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112898635	112898635	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcataatggcctccttactGatcaccacgaatccctggat	7	14	1	1	rs146199973	byFrequency	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112898635	T	T	112898635	3	4	97	1	0	0	0	0	1	0	0	0	11504	1290	45	3	841	3	PALM2-AKAP2	9	112898635	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1027914	112898635	28314796	342	97460											
TLR4	7099	broad.mit.edu	37	chr9	120475650	120475650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatggtgttattaccatgaGttcaaacttcttgggcttag	9	7	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120475650	T	T	120475650	3	4	97	1	0	0	0	0	1	0	0	0	16076	1029	36	3	1254	3	TLR4	9	120475650	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	7577015	120475650	20737781	343	97461											
GARNL3	84253	broad.mit.edu	37	chr9	130027144	130027144	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagtctgttccatagcaGccctttttgcaaatggtagt	9	9	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130027144	T	T	130027144	1	4	97	0	1	0	0	0	0	0	0	0	6303	986	34	3		3	GARNL3	9	130027144	5'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	9551494	130027144	11186287	344	97462											
TTC16	158248	broad.mit.edu	37	chr9	130479638	130479638	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagaggccagcagtgcttgGagcaggcagactgggagaca	16	10	0	3	rs139753825	byFrequency	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130479638	T	T	130479638	4	4	97	1	0	0	0	0	0	1	0	0	16809	1175	41	3	227	3	TTC16	9	130479638	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	452494	130479638	10733793	345	97463											
FCN1	2219	broad.mit.edu	37	chr9	137803106	137803106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggtctacacggagctcGctgcttcctgttggaaaaag	11	11	1	0	rs142943184	byFrequency;by1000genomes	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137803106	T	T	137803106	3	4	97	1	0	0	0	0	1	0	0	0	5848	1078	38	3	382	3	FCN1	9	137803106	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	7323468	137803106	3410325	346	97464											
ZMYND11	10771	broad.mit.edu	37	chr10	293308	293308	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtattttctagtgtctggAataatatattacttttataa	5	3	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	293308	G	G	293308	1	3	97	0	1	0	0	0	0	0	0	0	17832	261	9	5		5	ZMYND11	10	293308	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08		293308	135241439	347	97465											
CALML3	810	broad.mit.edu	37	chr10	5567336	5567336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgcgtgttcgacaaggaCggcaacggcttcgtcagcgc	13	13	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5567336	A	A	5567336	3	1	97	1	0	0	0	0	1	0	0	0	2613	535	19	3	290	3	CALML3	10	5567336	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5274028	5567336	129967411	348	97466											
C10orf18	54906	broad.mit.edu	37	chr10	5782212	5782212	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagcagcaaccccagtgggGaaagtcatgccatttcggca	12	11	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5782212	A	A	5782212	2	1	97	1	0	0	0	0	0	0	0	1	1607	1161	41	4		4	C10orf18	10	5782212	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	214876	5782212	129752535	349	97467											
IL2RA	3559	broad.mit.edu	37	chr10	6061546	6061546	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaagtcagggtgtctctgTgaatgagaagctcagaggct	15	6	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6061546	A	A	6061546	1	1	97	0	1	0	0	0	0	0	0	0	7756	1711	59	5		5	IL2RA	10	6061546	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	279334	6061546	129473201	350	97468											
PTF1A	256297	broad.mit.edu	37	chr10	23481584	23481584	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggaggacggcgatgagcTgctggcggacgagcaggccg	19	11	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23481584	A	A	23481584	3	1	97	1	0	0	0	0	1	0	0	0	12846	1580	55	5	127	5	PTF1A	10	23481584	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	17420038	23481584	112053163	351	97469											
MYO3A	53904	broad.mit.edu	37	chr10	26357725	26357725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagagcaacttgagaagtGttattccagagatcagatct	9	8	3	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26357725	T	T	26357725	3	4	97	1	0	0	0	0	1	0	0	0	10170	1377	48	3	1120	3	MYO3A	10	26357725	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2876141	26357725	109177022	352	97470											
GAD2	2572	broad.mit.edu	37	chr10	26569896	26569896	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcgcatgccctgagcctgtCagggtggagtgccacccgct	14	14	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26569896	A	A	26569896	1	1	97	0	1	0	0	0	0	0	0	0	6240	841	29	3		3	GAD2	10	26569896	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	212171	26569896	108964851	353	97471											
ABI1	10006	broad.mit.edu	37	chr10	27048010	27048010	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgaattttgagaataaagTggacctccattaacatgagg	9	6	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27048010	A	A	27048010	2	1	97	1	0	0	0	0	0	0	0	1	88	1683	59	5		5	ABI1	10	27048010	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	478114	27048010	108486737	354	97472											
RBP3	5949	broad.mit.edu	37	chr10	48389044	48389044	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcacgatggcatcgggcaCcactccaccacccagccagg	10	18	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48389044	G	G	48389044	3	3	97	1	0	0	0	0	1	0	0	0	13265	507	18	4	1925	4	RBP3	10	48389044	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	21341034	48389044	87145703	355	97473											
GDF2	2658	broad.mit.edu	37	chr10	48414372	48414372	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaccacgcttcctttcaGgtcatgagaggggtccacgt	11	11	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48414372	A	A	48414372	2	1	97	1	0	0	0	0	0	0	0	1	6378	991	35	4		4	GDF2	10	48414372	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	25328	48414372	87120375	356	97474											
PCDH15	65217	broad.mit.edu	37	chr10	55996679	55996679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggcgtaacaataatggGgttcagttcttcctgaaaaa	11	6	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55996679	T	T	55996679	3	4	97	1	0	0	0	0	1	0	0	0	11605	1232	43	2	6722	2	PCDH15	10	55996679	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	7582307	55996679	79538068	357	97475											
RHOBTB1	9886	broad.mit.edu	37	chr10	62632019	62632019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagatgtggtgcaaacaCcaggcggccaactggtgggc	16	10	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62632019	A	A	62632019	3	1	97	1	0	0	0	0	1	0	0	0	13442	508	18	3	253	3	RHOBTB1	10	62632019	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	6635340	62632019	72902728	358	97476											
DNAJC12	56521	broad.mit.edu	37	chr10	69565369	69565369	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaattttgcggggagacTgacttctctaggggcttggg	15	7	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69565369	C	C	69565369	2	2	97	1	0	0	0	0	0	0	0	1	4671	1567	55	5		5	DNAJC12	10	69565369	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	6933350	69565369	65969378	359	97477											
SGPL1	8879	broad.mit.edu	37	chr10	72614534	72614534	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattcctgaaagtggacaaaGagtatgtgaaagctttaccc	9	8	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72614534	C	C	72614534	3	2	97	1	0	0	0	0	1	0	0	0	14331	943	33	4	345	4	SGPL1	10	72614534	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	3049165	72614534	62920213	360	97478											
NDST2	8509	broad.mit.edu	37	chr10	75562937	75562937	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccactgagggctcttgtgGggattatacctgtccagagg	13	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75562937	A	A	75562937	1	1	97	0	1	0	0	0	0	0	0	0	10351	1247	43	4		4	NDST2	10	75562937	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2948403	75562937	59971810	361	97479											
SFTPA2	729238	broad.mit.edu	37	chr10	81318868	81318868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggctcagctatcactccGtgggcactatgaggacagac	12	12	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81318868	T	T	81318868	1	4	97	0	1	0	0	0	0	0	0	0	14303	1160	40	3		3	SFTPA2	10	81318868	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5755931	81318868	54215879	362	97480											
NOC3L	64318	broad.mit.edu	37	chr10	96099536	96099536	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgctaaaatgccaatacttGaatttggaagaacatgaaga	8	5	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96099536	T	T	96099536	4	4	97	1	0	0	0	0	0	1	0	0	10609	1294	45	3	500	3	NOC3L	10	96099536	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	14780668	96099536	39435211	363	97481											
ZNF518A	9849	broad.mit.edu	37	chr10	97919653	97919653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagccagaatctagagatGccttacccttcttactagat	7	10	2	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97919653	T	T	97919653	3	4	97	1	0	0	0	0	1	0	0	0	18089	1319	46	3	3576	3	ZNF518A	10	97919653	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1820117	97919653	37615094	364	97482											
DNTT	1791	broad.mit.edu	37	chr10	98092368	98092368	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccgggtaagtgctacatgGacccatgggatgatgttagc	13	9	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98092368	T	T	98092368	1	4	97	0	1	0	0	0	0	0	0	0	4720	1189	41	3		3	DNTT	10	98092368	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	172715	98092368	37442379	365	97483											
ANKRD2	26287	broad.mit.edu	37	chr10	99341096	99341096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgcacagccatgcattgGgcctgccgcgggggccactt	14	14	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99341096	T	T	99341096	3	4	97	1	0	0	0	0	1	0	0	0	647	1241	43	2	682	2	ANKRD2	10	99341096	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1248728	99341096	36193651	366	97484											
HPSE2	60495	broad.mit.edu	37	chr10	100995383	100995383	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacatcaagtagaatcagGgtcttttccttcaaacctgc	6	12	5	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100995383	A	A	100995383	2	1	97	1	0	0	0	0	0	0	0	1	7412	1219	43	4		4	HPSE2	10	100995383	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	1654287	100995383	34539364	367	97485											
PKD2L1	9033	broad.mit.edu	37	chr10	102051013	102051013	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttgggggaaggagagggtGagctatttccttacactgcc	15	7	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102051013	A	A	102051013	1	1	97	0	1	0	0	0	0	0	0	0	12062	1305	45	4		4	PKD2L1	10	102051013	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1055630	102051013	33483734	368	97486											
SEC31B	25956	broad.mit.edu	37	chr10	102249904	102249904	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggccgggacctagtggtctCagaggaagcagagggaacag	17	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102249904	G	G	102249904	2	3	97	1	0	0	0	0	0	0	0	1	14112	813	29	4		4	SEC31B	10	102249904	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	198891	102249904	33284843	369	97487											
SFXN2	118980	broad.mit.edu	37	chr10	104495588	104495588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcctgtggggagatgtcCcctgatgctttggtttctcc	14	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104495588	T	T	104495588	1	4	97	0	1	0	0	0	0	0	0	0	14308	638	22	4		4	SFXN2	10	104495588	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2245684	104495588	31039159	370	97488											
PDCD11	22984	broad.mit.edu	37	chr10	105198508	105198508	+	Frame_Shift_Del	DEL	A	-	-													ctccatccaggacattaaggAagggcagcttctgaggggct							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105198508	-	-	105198508	7	5	97	1	0	1	0	1	0	0	0	0	11711	246	9	0	4070	0	PDCD11	10	105198508	Frame_Shift_Del	DEL	A	TCGA-38-4626-01A-01D-1553-08	702920	105198508	30336239	371	97489											
SORCS3	22986	broad.mit.edu	37	chr10	106802789	106802789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggttccttgagacttaCattctcacttcattgttttg	7	9	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106802789	A	A	106802789	1	1	97	0	1	0	0	0	0	0	0	0	15046	493	17	3		3	SORCS3	10	106802789	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1604281	106802789	28731958	372	97490											
TDRD1	56165	broad.mit.edu	37	chr10	115973036	115973036	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttaagtttaccttgggGgaaattaggagctaaatttc	9	5	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115973036	A	A	115973036	1	1	97	0	1	0	0	0	0	0	0	0	15852	1247	43	4		4	TDRD1	10	115973036	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	9170247	115973036	19561711	373	97491											
ABLIM1	3983	broad.mit.edu	37	chr10	116203832	116203832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactggctaacagagatgacCtttcccggctctctttctcc	8	14	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116203832	A	A	116203832	3	1	97	1	0	0	0	0	1	0	0	0	94	681	24	2	471	2	ABLIM1	10	116203832	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	230796	116203832	19330915	374	97492											
FAM160B1	57700	broad.mit.edu	37	chr10	116608452	116608452	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaatcctcctaccatgttGagggcacaggatatgacact	8	11	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116608452	T	T	116608452	4	4	97	1	0	0	0	0	0	1	0	0	5516	1291	45	3	1809	3	FAM160B1	10	116608452	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	404620	116608452	18926295	375	97493											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118355742	118355742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagacagagtatagctaccCcccttccaaagttcacctca	5	16	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118355742	A	A	118355742	3	1	97	1	0	0	0	0	1	0	0	0	12245	623	22	2	500	2	PNLIPRP1	10	118355742	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1747290	118355742	17179005	376	97494											
KIAA1598	57698	broad.mit.edu	37	chr10	118687292	118687292	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatgcagagcagtcttcctgGatgtgcttaccggataggat	13	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118687292	A	A	118687292	1	1	97	0	1	0	0	0	0	0	0	0	8316	1189	41	4		4	KIAA1598	10	118687292	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	331550	118687292	16847455	377	97495											
PDZD8	118987	broad.mit.edu	37	chr10	119043973	119043973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttaggtgagggggcttcCagtctcaatttggaaaggta	14	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119043973	A	A	119043973	2	1	97	1	0	0	0	0	0	0	0	1	11799	581	21	2		2	PDZD8	10	119043973	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	356681	119043973	16490774	378	97496											
BUB3	9184	broad.mit.edu	37	chr10	124922239	124922239	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcagtaatgatgggaCtacgcttgcaatagcgtcat	10	9	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124922239	G	G	124922239	3	3	97	1	0	0	0	0	1	0	0	0	1582	565	20	4	888	4	BUB3	10	124922239	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5878266	124922239	10612508	379	97497											
CPXM2	119587	broad.mit.edu	37	chr10	125602101	125602101	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaggaagggagggaggatAggagaagaaaatgaggaagg	21	0	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125602101	C	C	125602101	1	2	97	0	1	0	0	0	0	0	0	0	3870	435	15	5		5	CPXM2	10	125602101	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	679862	125602101	9932646	380	97498											
FAM175B	23172	broad.mit.edu	37	chr10	126523082	126523082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatccaggattgcagcagGcagtgttaagcagacagatg	12	8	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126523082	T	T	126523082	3	4	97	1	0	0	0	0	1	0	0	0	5543	1203	42	3	824	3	FAM175B	10	126523082	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	920981	126523082	9011665	381	97499											
JAKMIP3	282973	broad.mit.edu	37	chr10	133966534	133966534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggccgaaaaggtaacaGcagctgtgtggacagtcggg	15	9	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133966534	T	T	133966534	1	4	97	0	1	0	0	0	0	0	0	0	8012	986	34	3		3	JAKMIP3	10	133966534	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	7443452	133966534	1568213	382	97500											
STK32C	282974	broad.mit.edu	37	chr10	134059441	134059441	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccaatggcccgaaggatcTggaagtggtcgaagttcact	12	10	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134059441	A	A	134059441	3	1	97	1	0	0	0	0	1	0	0	0	15417	1580	55	5	1223	5	STK32C	10	134059441	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	92907	134059441	1475306	383	97501											
NAP1L4	4676	broad.mit.edu	37	chr11	2979700	2979700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taattgttctaacagtgcctCgacccttatgcttctgcttt	6	11	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2979700	A	A	2979700	3	1	97	1	0	0	0	0	1	0	0	0	10253	884	31	3	330	3	NAP1L4	11	2979700	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08		2979700	132026816	384	97502											
OR51F2	119694	broad.mit.edu	37	chr11	4842727	4842727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggcctgaaagccaccCagtactggatctccatccct	7	16	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4842727	A	A	4842727	3	1	97	1	0	0	0	0	1	0	0	0	11191	595	21	2	114	2	OR51F2	11	4842727	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1863027	4842727	130163789	385	97503											
OR51L1	119682	broad.mit.edu	37	chr11	5020793	5020793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattatcctgtacagatgCcaggaccaacagtatttatg	8	8	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5020793	A	A	5020793	3	1	97	1	0	0	0	0	1	0	0	0	11196	739	26	3	583	3	OR51L1	11	5020793	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	178066	5020793	129985723	386	97504											
HBG2	3048	broad.mit.edu	37	chr11	5593128	5593129	+	Intron	INS	-	CA	CA													ctttttcacagttaagtgggINStctttgagaatcttctcttg							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	5593129	CA	CA	5593128	6	5	97	0	1	1	1	0	0	0	0	0	7049	1276	44	0		0	HBG2	11	5593128	Intron	INS	-	TCGA-38-4626-01A-01D-1553-08	572335	5593128	129413388	387	97505											
CNGA4	1262	broad.mit.edu	37	chr11	6261622	6261622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgggcttcgggcgtgacGcatgggtgtacccggacccc	15	14	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6261622	T	T	6261622	3	4	97	1	0	0	0	0	1	0	0	0	3631	1087	38	3	612	3	CNGA4	11	6261622	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	668494	6261622	128744894	388	97506											
OLFML1	283298	broad.mit.edu	37	chr11	7530738	7530738	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataactctccaaaggtgtaCttattaattggatccagaaa	6	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7530738	A	A	7530738	4	1	97	1	0	0	0	0	0	1	0	0	10951	576	20	3	538	3	OLFML1	11	7530738	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1269116	7530738	127475778	389	97507											
EIF3F	8665	broad.mit.edu	37	chr11	8008847	8008847	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcagcctatcaagctccTgatattcatgaatgctgtca	6	10	4	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8008847	C	C	8008847	1	2	97	0	1	0	0	0	0	0	0	0	5058	1595	55	5		5	EIF3F	11	8008847	5'Flank	SNP	T	TCGA-38-4626-01A-01D-1553-08	478109	8008847	126997669	390	97508											
PIK3C2A	5286	broad.mit.edu	37	chr11	17111600	17111600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactgattatgacacatccGgtaggttttgtctgaatact	8	8	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17111600	A	A	17111600	1	1	97	0	1	0	0	0	0	0	0	0	12004	1131	39	4		4	PIK3C2A	11	17111600	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	9102753	17111600	117894916	391	97509											
USH1C	10083	broad.mit.edu	37	chr11	17522927	17522927	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggacagtggggacctgagaGaccacccaggagtgaccttg	15	10	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17522927	C	C	17522927	1	2	97	0	1	0	0	0	0	0	0	0	17160	957	33	4		4	USH1C	11	17522927	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	411327	17522927	117483589	392	97510											
LDHA	3939	broad.mit.edu	37	chr11	18424404	18424404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtggatatcttgacctacGtggcttggaagataagtggt	13	5	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18424404	T	T	18424404	3	4	97	1	0	0	0	0	1	0	0	0	8770	1145	40	3	541	3	LDHA	11	18424404	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	901477	18424404	116582112	393	97511											
NAV2	89797	broad.mit.edu	37	chr11	20099583	20099583	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaccattgagctgctaaaGaaacagaacgcagctgccca	8	11	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20099583	T	T	20099583	3	4	97	1	0	0	0	0	1	0	0	0	10278	933	33	3	5315	3	NAV2	11	20099583	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1675179	20099583	114906933	394	97512											
NELL1	4745	broad.mit.edu	37	chr11	20982101	20982101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggagactctgcctactGtgaaggtaagtaagctattt	11	8	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20982101	T	T	20982101	3	4	97	1	0	0	0	0	1	0	0	0	10428	1377	48	3	1341	3	NELL1	11	20982101	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	882518	20982101	114024415	395	97513											
LUZP2	338645	broad.mit.edu	37	chr11	24784871	24784871	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaggtaagatatatttcatCttagatacattttatataga	6	3	2	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24784871	A	A	24784871	1	1	97	0	1	0	0	0	0	0	0	0	9174	928	32	3		3	LUZP2	11	24784871	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	3802770	24784871	110221645	396	97514											
DCDC1	341019	broad.mit.edu	37	chr11	31349616	31349616	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactactttctataaacactTttatccccttcagtatttag	2	10	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31349616	A	A	31349616	1	1	97	0	1	0	0	0	0	0	0	0	4317	1856	64	5		5	DCDC1	11	31349616	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	6564745	31349616	103656900	397	97515											
PRR5L	79899	broad.mit.edu	37	chr11	36484285	36484285	+	Nonstop_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaactgtgcttccctcagctGagtcgccacccctgggcctt	10	16	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36484285	T	T	36484285	4	4	97	1	0	0	0	0	0	0	0	0	12708	1285	45	3	1142	3	PRR5L	11	36484285	Nonstop_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	5134669	36484285	98522231	398	97516											
CHST1	8534	broad.mit.edu	37	chr11	45671882	45671882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccacgtggctgcgctcgcGgcacgcctcggccgccacgg	16	18	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45671882	T	T	45671882	3	4	97	1	0	0	0	0	1	0	0	0	3428	1116	39	1	647	1	CHST1	11	45671882	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	9187597	45671882	89334634	399	97517											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45926567	45926567	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttaaaaaacatctctttcTgcggatatcatccaaagaac	5	9	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45926567	C	C	45926567	3	2	97	1	0	0	0	0	1	0	0	0	9376	1580	55	5	1977	5	MAPK8IP1	11	45926567	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	254685	45926567	89079949	400	97518											
FNBP4	23360	broad.mit.edu	37	chr11	47754084	47754084	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaaaggggagaagagtgCgtacctgtcccagtggcagg	17	7	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47754084	T	T	47754084	1	4	97	0	1	0	0	0	0	0	0	0	6025	783	27	4		4	FNBP4	11	47754084	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1827517	47754084	87252432	401	97519											
TRIM48	79097	broad.mit.edu	37	chr11	55037993	55037993	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagcatttgtattggatgtGaccgtcaaaatccgccccat	9	10	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55037993	T	T	55037993	1	4	97	0	1	0	0	0	0	0	0	0	16648	1305	45	3		3	TRIM48	11	55037993	3'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	7283909	55037993	79968523	402	97520											
OR5L1	219437	broad.mit.edu	37	chr11	55579402	55579402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctacttctgtgggacgGtgtgttctctgattcatttg	12	8	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55579402	T	T	55579402	3	4	97	1	0	0	0	0	1	0	0	0	11264	1261	44	3	462	3	OR5L1	11	55579402	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	541409	55579402	79427114	403	97521											
OR5L1	219437	broad.mit.edu	37	chr11	55579854	55579854	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagaagctctcagaaaagtGatgggctccaaaattcactc	8	9	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55579854	C	C	55579854	2	2	97	1	0	0	0	0	0	0	0	1	11264	1277	45	4		4	OR5L1	11	55579854	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	452	55579854	79426662	404	97522											
OR5D18	219438	broad.mit.edu	37	chr11	55587432	55587432	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttcttctgtacctttgtGgtcactgaatcctttttatt	5	8	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55587432	A	A	55587432	2	1	97	1	0	0	0	0	0	0	0	1	11251	1335	47	4		4	OR5D18	11	55587432	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	7578	55587432	79419084	405	97523											
SPRYD5	84767	broad.mit.edu	37	chr11	55659052	55659052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccctgatatacaccatcCccaattgctccttctcacct	3	17	1	1	rs148245438	byFrequency	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55659052	A	A	55659052	3	1	97	1	0	0	0	0	1	0	0	0	15229	623	22	2	1325	2	SPRYD5	11	55659052	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	71620	55659052	79347464	406	97524											
OR8H3	390152	broad.mit.edu	37	chr11	55890175	55890175	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgtcttcttgggtacTgctgaatgttatcttctctc	8	8	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55890175	C	C	55890175	2	2	97	1	0	0	0	0	0	0	0	1	11333	1567	55	5		5	OR8H3	11	55890175	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	231123	55890175	79116341	407	97525											
TCN1	6947	broad.mit.edu	37	chr11	59633784	59633784	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaatgggatcttttctcaGgtaactctacatagagtctc	9	8	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59633784	A	A	59633784	1	1	97	0	1	0	0	0	0	0	0	0	15828	1015	35	4		4	TCN1	11	59633784	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3743609	59633784	75372732	408	97526											
MS4A6E	245802	broad.mit.edu	37	chr11	60105493	60105493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttcttattattccatcCtttgaaaatctctctgttaa	3	8	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60105493	A	A	60105493	1	1	97	0	1	0	0	0	0	0	0	0	9959	696	24	2		2	MS4A6E	11	60105493	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	471709	60105493	74901023	409	97527											
MS4A1	931	broad.mit.edu	37	chr11	60233379	60233379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacccaattaataaatctGtgtctccatttcaggtcaaa	4	10	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60233379	T	T	60233379	1	4	97	0	1	0	0	0	0	0	0	0	9948	1392	48	3		3	MS4A1	11	60233379	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	127886	60233379	74773137	410	97528											
SLC22A10	387775	broad.mit.edu	37	chr11	62931252	62931252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatctaagcctttttggGggatggtagccctaaatggt	12	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62931252	T	T	62931252	1	4	97	0	1	0	0	0	0	0	0	0	14554	1247	43	2		2	SLC22A10	11	62931252	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2697873	62931252	72075264	411	97529											
SLC22A25	387601	broad.mit.edu	37	chr11	62948379	62948379	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaaatacatggcttaaAaatgcaatggcaaatataaa	7	5	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62948379	G	G	62948379	1	3	97	0	1	0	0	0	0	0	0	0	14568	29	1	5		5	SLC22A25	11	62948379	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	17127	62948379	72058137	412	97530											
SLC22A10	387775	broad.mit.edu	37	chr11	63066369	63066369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagacagagatgactgcaCttgtgtatttttcttgtatc	9	6	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63066369	A	A	63066369	1	1	97	0	1	0	0	0	0	0	0	0	14554	580	20	3		3	SLC22A10	11	63066369	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	117990	63066369	71940147	413	97531											
C11orf2	738	broad.mit.edu	37	chr11	64875037	64875037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctctccccttttccccGcccctgccctcctagacacc	4	24	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64875037	T	T	64875037	1	4	97	0	1	0	0	0	0	0	0	0	1644	1102	38	3		3	C11orf2	11	64875037	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1808668	64875037	70131479	414	97532											
FGF3	2248	broad.mit.edu	37	chr11	69631242	69631242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcccccacggagggggcgGctgaggcccagctggccctg	17	17	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69631242	T	T	69631242	1	4	97	0	1	0	0	0	0	0	0	0	5910	1218	42	3		3	FGF3	11	69631242	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	4756205	69631242	65375274	415	97533											
PDE2A	5138	broad.mit.edu	37	chr11	72297215	72297215	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggatcacatgctcgtcctCgtcggtgaacctggaggagg	14	11	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72297215	A	A	72297215	4	1	97	1	0	0	0	0	0	1	0	0	11730	893	31	3	1816	3	PDE2A	11	72297215	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	2665973	72297215	62709301	416	97534											
INTS4	92105	broad.mit.edu	37	chr11	77690191	77690191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgtagaatttcgaaagGggtaactatataaactaatt	9	4	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77690191	T	T	77690191	1	4	97	0	1	0	0	0	0	0	0	0	7850	1247	43	2		2	INTS4	11	77690191	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5392976	77690191	57316325	417	97535											
DLG2	1740	broad.mit.edu	37	chr11	84245668	84245668	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catggacattttctatttgaGagaggttcttttctgataca	8	6	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84245668	A	A	84245668	3	1	97	1	0	0	0	0	1	0	0	0	4595	942	33	4	2710	4	DLG2	11	84245668	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	6555477	84245668	50760848	418	97536											
FOLR4	390243	broad.mit.edu	37	chr11	94039629	94039629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttccctagacacttgcCgatccttgccccttttgcct	5	16	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94039629	A	A	94039629	1	1	97	0	1	0	0	0	0	0	0	0	6042	667	23	1		1	FOLR4	11	94039629	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	9793961	94039629	40966887	419	97537											
GUCY1A2	2977	broad.mit.edu	37	chr11	106849535	106849535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaatgcaactcatatacaCacgcacaagcacacgcagtc	7	14	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106849535	A	A	106849535	1	1	97	0	1	0	0	0	0	0	0	0	6958	493	17	3		3	GUCY1A2	11	106849535	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	12809906	106849535	28156981	420	97538											
PPP2R1B	5519	broad.mit.edu	37	chr11	111636081	111636081	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgctagggcaattgttgAtaacttcttaatactgttga	9	5	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111636081	G	G	111636081	3	3	97	1	0	0	0	0	1	0	0	0	12484	333	12	5	1942	5	PPP2R1B	11	111636081	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	4786546	111636081	23370435	421	97539											
DSCAML1	57453	broad.mit.edu	37	chr11	117302317	117302317	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaccatgctgggagccCacggtgcgccagtcggaggt	16	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117302317	A	A	117302317	2	1	97	1	0	0	0	0	0	0	0	1	4809	581	21	2		2	DSCAML1	11	117302317	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	5666236	117302317	17704199	422	97540											
ABCG4	64137	broad.mit.edu	37	chr11	119027327	119027327	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaggcgtggtcaccaacctGatcccctatctaaagggact	9	12	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119027327	T	T	119027327	2	4	97	1	0	0	0	0	0	0	0	1	70	1277	45	3		3	ABCG4	11	119027327	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	1725010	119027327	15979189	423	97541											
FAM118B	79607	broad.mit.edu	37	chr11	126110730	126110730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaagcctcgagaacttGtgctagtgattggaacaggc	12	8	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126110730	T	T	126110730	3	4	97	1	0	0	0	0	1	0	0	0	5458	1377	48	3	136	3	FAM118B	11	126110730	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	7083403	126110730	8895786	424	97542											
OPCML	4978	broad.mit.edu	37	chr11	132306643	132306643	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaccgactgaaacaccaGtgttcttggcttttgagata	9	9	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132306643	A	A	132306643	3	1	97	1	0	0	0	0	1	0	0	0	10968	1029	36	4	354	4	OPCML	11	132306643	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	6195913	132306643	2699873	425	97543											
GLB1L3	112937	broad.mit.edu	37	chr11	134181165	134181165	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagtgggaaaacaaatcctCtgcatttcattcaaatttag	7	7	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134181165	A	A	134181165	1	1	97	0	1	0	0	0	0	0	0	0	6494	928	32	3		3	GLB1L3	11	134181165	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1874522	134181165	825351	426	97544											
RAD51AP1	10635	broad.mit.edu	37	chr12	4662313	4662313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccaaatgtaatgctttgGgtaagcttggtccaaaacac	8	8	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4662313	T	T	4662313	3	4	97	1	0	0	0	0	1	0	0	0	13094	1246	43	2	802	2	RAD51AP1	12	4662313	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08		4662313	129189582	427	97545											
VWF	7450	broad.mit.edu	37	chr12	6078534	6078535	+	Frame_Shift_Ins	INS	-	G	G													tgatgaggcaggggttctccINSggggaggcccactgggagcc							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6078535	G	G	6078534	7	5	97	1	0	1	1	0	0	0	0	0	17373	639	23	0	901	0	VWF	12	6078534	Frame_Shift_Ins	INS	-	TCGA-38-4626-01A-01D-1553-08	1416221	6078534	127773361	428	97546											
VWF	7450	broad.mit.edu	37	chr12	6145721	6145722	+	Intron	DNP	CC	AA	AA													atctaaagccctcctccagcCcgctccaggaagtgttgtct							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6145722	AA	AA	6145721	1	1	97	0	1	0	0	0	0	0	0	0	17373	638	22	2		2	VWF	12	6145721	Intron	DNP	CC	TCGA-38-4626-01A-01D-1553-08	67187	6145721	127706174	429	97547											
CD163	9332	broad.mit.edu	37	chr12	7633697	7633697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaagtagaatgtctgtgCctcaactgcagccactgatc	8	11	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7633697	A	A	7633697	1	1	97	0	1	0	0	0	0	0	0	0	2997	754	26	3		3	CD163	12	7633697	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1487976	7633697	126218198	430	97548											
CLEC6A	93978	broad.mit.edu	37	chr12	8610547	8610547	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggctgggatttccattGcactcctcagtgcttgcttc	10	12	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8610547	C	C	8610547	3	2	97	1	0	0	0	0	1	0	0	0	3552	1319	46	4	91	4	CLEC6A	12	8610547	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	976850	8610547	125241348	431	97549											
CLEC1B	51266	broad.mit.edu	37	chr12	10149523	10149523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactctcttcccatgttaaGttgtgcctgaagaacccata	6	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10149523	T	T	10149523	3	4	97	1	0	0	0	0	1	0	0	0	3538	1020	36	3	341	3	CLEC1B	12	10149523	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1538976	10149523	123702372	432	97550											
CLEC9A	283420	broad.mit.edu	37	chr12	10206811	10206811	+	Intron	DEL	C	-	-													tcaatctcaatctatccttgCcccgtcttttttatctgctt							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10206811	-	-	10206811	6	5	97	0	1	1	0	1	0	0	0	0	3554	754	26	0		0	CLEC9A	12	10206811	Intron	DEL	C	TCGA-38-4626-01A-01D-1553-08	57288	10206811	123645084	433	97551											
RERGL	79785	broad.mit.edu	37	chr12	18237551	18237551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatacacaataacaaaccCatctgcccagtgaagctcac	5	14	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18237551	A	A	18237551	3	1	97	1	0	0	0	0	1	0	0	0	13341	594	21	2	390	2	RERGL	12	18237551	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	8030740	18237551	115614344	434	97552											
SLCO1B1	10599	broad.mit.edu	37	chr12	21359077	21359077	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccattaaaaagataaaagaGaaagtttccagtattatctg	6	5	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21359077	T	T	21359077	1	4	97	0	1	0	0	0	0	0	0	0	14837	957	33	3		3	SLCO1B1	12	21359077	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3121526	21359077	112492818	435	97553											
KCNJ8	3764	broad.mit.edu	37	chr12	21918603	21918603	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggttcagtctggcagtgCccagcataaaccgtcaaaac	9	12	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21918603	A	A	21918603	1	1	97	0	1	0	0	0	0	0	0	0	8126	754	26	3		3	KCNJ8	12	21918603	3'UTR	SNP	C	TCGA-38-4626-01A-01D-1553-08	559526	21918603	111933292	436	97554											
SOX5	6660	broad.mit.edu	37	chr12	24048665	24048665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaggactgaggccaaaCtattagaggagtagactggt	13	6	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24048665	A	A	24048665	1	1	97	0	1	0	0	0	0	0	0	0	15068	580	20	3		3	SOX5	12	24048665	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2130062	24048665	109803230	437	97555											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	97	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1349619	25398284	108453611	438	97556											
PPFIBP1	8496	broad.mit.edu	37	chr12	27845694	27845694	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagctctgagctcttggCtctcagtgtgactccctgtc	11	12	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27845694	T	T	27845694	1	4	97	0	1	0	0	0	0	0	0	0	12409	812	28	4		4	PPFIBP1	12	27845694	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2447410	27845694	106006201	439	97557											
CAPRIN2	65981	broad.mit.edu	37	chr12	30879010	30879010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacctacaggctgatgcaCaggcttaggcacctacaaga	10	11	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30879010	A	A	30879010	3	1	97	1	0	0	0	0	1	0	0	0	2662	478	17	3	1628	3	CAPRIN2	12	30879010	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3033316	30879010	102972885	440	97558											
BICD1	636	broad.mit.edu	37	chr12	32447000	32447000	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatataagttccgggaggcaCggctccttcaggactatact	10	10	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32447000	A	A	32447000	2	1	97	1	0	0	0	0	0	0	0	1	1434	527	19	3		3	BICD1	12	32447000	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	1567990	32447000	101404895	441	97559											
OR6C4	341418	broad.mit.edu	37	chr12	55945335	55945335	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctatatttcttggagctaccGagttttacctcctggcctcc	7	13	1	0	rs78982301	byFrequency;by1000genomes	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55945335	T	T	55945335	4	4	97	1	0	0	0	0	0	1	0	0	11287	1059	37	3	327	3	OR6C4	12	55945335	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	23498335	55945335	77906560	442	97560											
TIMELESS	8914	broad.mit.edu	37	chr12	56827313	56827313	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accccagggactccaaaggaAatcctcacctctttgtaggc	8	14	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56827313	T	T	56827313	1	4	97	0	1	0	0	0	0	0	0	0	16027	29	1	5		5	TIMELESS	12	56827313	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	881978	56827313	77024582	443	97561											
E2F7	144455	broad.mit.edu	37	chr12	77449706	77449706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctttttcttctcccggtCccttatatctgggctggcag	8	14	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77449706	A	A	77449706	3	1	97	1	0	0	0	0	1	0	0	0	4912	855	30	3	2481	3	E2F7	12	77449706	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	20622393	77449706	56402189	444	97562											
LRRIQ1	84125	broad.mit.edu	37	chr12	85450741	85450741	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgcacctgaacctgatAgcatgacctgctgtgtatca	8	10	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85450741	T	T	85450741	3	4	97	1	0	0	0	0	1	0	0	0	9116	420	15	5	2196	5	LRRIQ1	12	85450741	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	8001035	85450741	48401154	445	97563											
PLXNC1	10154	broad.mit.edu	37	chr12	94641809	94641809	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattgtggaaccctgcagtAtcgggaggaccccagattca	13	10	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94641809	T	T	94641809	3	4	97	1	0	0	0	0	1	0	0	0	12221	449	16	5	2569	5	PLXNC1	12	94641809	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	9191068	94641809	39210086	446	97564											
C12orf63	374467	broad.mit.edu	37	chr12	97114182	97114182	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatggtatcctttccttaGtcgatgttactgatggaagc	10	7	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97114182	T	T	97114182	5	4	97	1	0	0	0	0	0	0	1	0	1719	1043	36	3	2141	3	C12orf63	12	97114182	Splice_Site	SNP	G	TCGA-38-4626-01A-01D-1553-08	2472373	97114182	36737713	447	97565											
RFX4	5992	broad.mit.edu	37	chr12	106977024	106977024	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccctccctcccttcctccCtgggcatctctagcacaggg	7	20	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106977024	A	A	106977024	1	1	97	0	1	0	0	0	0	0	0	0	13373	696	24	2		2	RFX4	12	106977024	5'Flank	SNP	C	TCGA-38-4626-01A-01D-1553-08	9862842	106977024	26874871	448	97566											
CORO1C	23603	broad.mit.edu	37	chr12	109046014	109046014	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattgtcacacagttacacCaacctagaatacttgacaat	4	10	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109046014	A	A	109046014	1	1	97	0	1	0	0	0	0	0	0	0	3787	609	21	2		2	CORO1C	12	109046014	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2068990	109046014	24805881	449	97567											
MYO1H	283446	broad.mit.edu	37	chr12	109847330	109847330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagcacaaaggaaaagaccTaactatgaatggggtgtgtt	12	5	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109847330	A	A	109847330	1	1	97	0	1	0	0	0	0	0	0	0	10169	1537	53	5		5	MYO1H	12	109847330	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	801316	109847330	24004565	450	97568											
TBX5	6910	broad.mit.edu	37	chr12	114841542	114841542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaaagggacccgaagcGcgaggtctccttacctgctg	12	13	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114841542	T	T	114841542	1	4	97	0	1	0	0	0	0	0	0	0	15783	1102	38	3		3	TBX5	12	114841542	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	4994212	114841542	19010353	451	97569											
TCTN2	79867	broad.mit.edu	37	chr12	124181821	124181821	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcactacatgaatatcaaaGacagcatgaatatgaaaaat	5	6	2	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124181821	T	T	124181821	1	4	97	0	1	0	0	0	0	0	0	0	15845	957	33	3		3	TCTN2	12	124181821	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	9340279	124181821	9670074	452	97570											
FZD10	11211	broad.mit.edu	37	chr12	130648340	130648340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatccgcctcttcgccggcGccgagagcatcgcctgcgac	11	18	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130648340	T	T	130648340	3	4	97	1	0	0	0	0	1	0	0	0	6189	1087	38	3	855	3	FZD10	12	130648340	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	6466519	130648340	3203555	453	97571											
RFC3	5983	broad.mit.edu	37	chr13	34409540	34409540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgaagaaaagaagggagGgcctgcctaaagtgaagtta	14	5	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34409540	T	T	34409540	1	4	97	0	1	0	0	0	0	0	0	0	13354	1247	43	2		2	RFC3	13	34409540	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08		34409540	80760338	454	97572											
KBTBD6	89890	broad.mit.edu	37	chr13	41705565	41705565	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaaaggtcccccgagtaTggatcacagcagagaaaggg	13	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41705565	A	A	41705565	2	1	97	1	0	0	0	0	0	0	0	1	8067	1451	51	5		5	KBTBD6	13	41705565	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	7296025	41705565	73464313	455	97573											
TBC1D4	9882	broad.mit.edu	37	chr13	75936627	75936627	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtcacctttccacagtaCaggacttcgaacttctgaga	8	12	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75936627	A	A	75936627	2	1	97	1	0	0	0	0	0	0	0	1	15744	465	17	3		3	TBC1D4	13	75936627	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	34231062	75936627	39233251	456	97574											
RNF219	79596	broad.mit.edu	37	chr13	79190730	79190730	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagggacaaaggagtacaaGgagctggaagatcataaagt	13	4	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79190730	C	C	79190730	3	2	97	1	0	0	0	0	1	0	0	0	13593	1000	35	4	1018	4	RNF219	13	79190730	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	3254103	79190730	35979148	457	97575											
UBAC2	337867	broad.mit.edu	37	chr13	99890830	99890830	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagctctgcctcattggccCctgagaggagagcggacagt	13	11	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99890830	T	T	99890830	1	4	97	0	1	0	0	0	0	0	0	0	16961	638	22	4		4	UBAC2	13	99890830	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	20700100	99890830	15279048	458	97576											
FGF14	2259	broad.mit.edu	37	chr13	102670654	102670654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcaccaacattttcttcCcagagtccgcaaccaaataa	4	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102670654	A	A	102670654	1	1	97	0	1	0	0	0	0	0	0	0	5900	638	22	2		2	FGF14	13	102670654	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2779824	102670654	12499224	459	97577											
OR4Q3	441669	broad.mit.edu	37	chr14	20215964	20215964	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctatgacaggtatgttgcCatctgtaaccctttgcgcta	9	11	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20215964	A	A	20215964	2	1	97	1	0	0	0	0	0	0	0	1	11175	581	21	2		2	OR4Q3	14	20215964	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08		20215964	87133576	460	97578											
OR4N5	390437	broad.mit.edu	37	chr14	20612538	20612538	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgcttcctgggccttcTggcctcctatgcagtcatcc	9	16	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612538	A	A	20612538	3	1	97	1	0	0	0	0	1	0	0	0	11173	1580	55	5	646	5	OR4N5	14	20612538	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	396574	20612538	86737002	461	97579											
TTC5	91875	broad.mit.edu	37	chr14	20767060	20767060	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaatatctgaaagagaaaCacagtgacaaatcatctcag	7	7	3	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20767060	G	G	20767060	1	3	97	0	1	0	0	0	0	0	0	0	16837	493	17	4		4	TTC5	14	20767060	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	154522	20767060	86582480	462	97580											
PABPN1	8106	broad.mit.edu	37	chr14	23792710	23792710	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggtaagtaaaggggagtaAgttgagataatttaaattac	12	1	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23792710	T	T	23792710	1	4	97	0	1	0	0	0	0	0	0	0	11462	87	3	5		5	PABPN1	14	23792710	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	3025650	23792710	83556830	463	97581											
CTSG	1511	broad.mit.edu	37	chr14	25043050	25043050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagggagactgagacaGgcctccctgctcctgcttcc	13	13	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25043050	T	T	25043050	1	4	97	0	1	0	0	0	0	0	0	0	4069	1015	35	2		2	CTSG	14	25043050	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1250340	25043050	82306490	464	97582											
G2E3	55632	broad.mit.edu	37	chr14	31066563	31066563	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatagcacatgttctgttacAtaatatatcacctgataaca	4	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31066563	G	G	31066563	1	3	97	0	1	0	0	0	0	0	0	0	6200	232	8	5		5	G2E3	14	31066563	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	6023513	31066563	76282977	465	97583											
MIA2	117153	broad.mit.edu	37	chr14	39706101	39706101	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttaatttaaagtgtgtAtttttctttacatgttttac	4	4	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39706101	G	G	39706101	1	3	97	0	1	0	0	0	0	0	0	0	9657	464	16	5		5	MIA2	14	39706101	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	8639538	39706101	67643439	466	97584											
C14orf106	55320	broad.mit.edu	37	chr14	45686404	45686404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagagtcagcaaaccattTtgataaggatttggttattt	8	4	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45686404	C	C	45686404	1	2	97	0	1	0	0	0	0	0	0	0	1751	1856	64	5		5	C14orf106	14	45686404	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	5980303	45686404	61663136	467	97585											
NID2	22795	broad.mit.edu	37	chr14	52508829	52508829	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccctactcacctgcgaGgctgaagccgttctcagagc	12	14	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52508829	A	A	52508829	3	1	97	1	0	0	0	0	1	0	0	0	10510	1000	35	4	2372	4	NID2	14	52508829	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	6822425	52508829	54840711	468	97586											
KCNH5	27133	broad.mit.edu	37	chr14	63416780	63416780	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagtagttcgttttcaTcctatctgagattgtagcca	7	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63416780	C	C	63416780	1	2	97	0	1	0	0	0	0	0	0	0	8105	1450	50	5		5	KCNH5	14	63416780	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	10907951	63416780	43932760	469	97587											
GPHN	10243	broad.mit.edu	37	chr14	67432223	67432223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatattaggccactagtaGgacaatacagatttcattca	7	8	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67432223	T	T	67432223	1	4	97	0	1	0	0	0	0	0	0	0	6675	1015	35	2		2	GPHN	14	67432223	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	4015443	67432223	39917317	470	97588											
KIAA1409	57578	broad.mit.edu	37	chr14	94120395	94120395	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtttcctttaatgacacccTaagccccagccgaaactcta	6	14	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120395	A	A	94120395	1	1	97	0	1	0	0	0	0	0	0	0	8300	1537	53	5		5	KIAA1409	14	94120395	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	26688172	94120395	13229145	471	97589											
C14orf49	161176	broad.mit.edu	37	chr14	95918724	95918724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgccgcccgtgttgcctgCagcacatgacgacaccgcag	12	16	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95918724	A	A	95918724	1	1	97	0	1	0	0	0	0	0	0	0	1789	725	25	3		3	C14orf49	14	95918724	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1798329	95918724	11430816	472	97590											
TDRD9	122402	broad.mit.edu	37	chr14	104474740	104474740	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgagtattctgcttttatAtatttaaaggatgaacttaa	6	3	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104474740	G	G	104474740	1	3	97	0	1	0	0	0	0	0	0	0	15858	464	16	5		5	TDRD9	14	104474740	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	8556016	104474740	2874800	473	97591											
AHNAK2	113146	broad.mit.edu	37	chr14	105412404	105412404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgtcggccagggacagGtccccctccagccgtgcacc	11	18	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105412404	T	T	105412404	3	4	97	1	0	0	0	0	1	0	0	0	415	1252	44	3	8007	3	AHNAK2	14	105412404	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	937664	105412404	1937136	474	97592											
AHNAK2	113146	broad.mit.edu	37	chr14	105420209	105420209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacctcctcacccttcaGgccagtacccgcttttgagg	7	17	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105420209	T	T	105420209	3	4	97	1	0	0	0	0	1	0	0	0	415	991	35	2	15812	2	AHNAK2	14	105420209	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	7805	105420209	1929331	475	97593											
MKRN3	7681	broad.mit.edu	37	chr15	23811793	23811793	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaagaacatatgagggcCtgcattgaagcacacgagaa	13	7	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23811793	T	T	23811793	2	4	97	1	0	0	0	0	0	0	0	1	9701	668	24	4		4	MKRN3	15	23811793	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08		23811793	78719599	476	97594											
C15orf2	23742	broad.mit.edu	37	chr15	24921956	24921956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtattcctccaaggagCgctgctcctcccagagctgc	9	15	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921956	A	A	24921956	3	1	97	1	0	0	0	0	1	0	0	0	1797	767	27	3	944	3	C15orf2	15	24921956	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1110163	24921956	77609436	477	97595											
TJP1	7082	broad.mit.edu	37	chr15	30024963	30024963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatctccagaagtcagcaCggtctccgcctgctgttttt	9	12	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30024963	A	A	30024963	3	1	97	1	0	0	0	0	1	0	0	0	16052	536	19	3	3513	3	TJP1	15	30024963	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5103007	30024963	72506429	478	97596											
TRPM1	4308	broad.mit.edu	37	chr15	31294304	31294304	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attcgaggaattgcttcagcGacatggtgttcatcttgcat	10	8	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31294304	T	T	31294304	2	4	97	1	0	0	0	0	0	0	0	1	16710	1045	37	3		3	TRPM1	15	31294304	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	1269341	31294304	71237088	479	97597											
RYR3	6263	broad.mit.edu	37	chr15	33926871	33926871	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaaacagggacagcctgCgggaagctgtgcgcactttt	13	10	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33926871	A	A	33926871	2	1	97	1	0	0	0	0	0	0	0	1	13881	759	27	3		3	RYR3	15	33926871	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	2632567	33926871	68604521	480	97598											
AQR	9716	broad.mit.edu	37	chr15	35198869	35198869	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttagtgccataaggttttgTgggacgtacggtaattaaaa	11	5	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35198869	C	C	35198869	3	2	97	1	0	0	0	0	1	0	0	0	837	1696	59	5	2821	5	AQR	15	35198869	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	1271998	35198869	67332523	481	97599											
SHC4	399694	broad.mit.edu	37	chr15	49135746	49135746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtgcttcaataatgagGtatctcgctgggactgcacc	11	10	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49135746	T	T	49135746	3	4	97	1	0	0	0	0	1	0	0	0	14386	1261	44	3	561	3	SHC4	15	49135746	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	13936877	49135746	53395646	482	97600											
AGPHD1	123688	broad.mit.edu	37	chr15	78819669	78819669	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgcagcacctcccacctctCtcagcagtggttgctctgtc	9	16	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78819669	T	T	78819669	1	4	97	0	1	0	0	0	0	0	0	0	393	928	32	4		4	AGPHD1	15	78819669	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	29683923	78819669	23711723	483	97601											
EFTUD1	79631	broad.mit.edu	37	chr15	82554002	82554002	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatctcccttatttatcaaAataagccatttaaaaagtat	2	8	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82554002	C	C	82554002	1	2	97	0	1	0	0	0	0	0	0	0	5000	29	1	5		5	EFTUD1	15	82554002	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	3734333	82554002	19977390	484	97602											
CHD2	1106	broad.mit.edu	37	chr15	93496623	93496623	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgctgatgaaatgggcctAggaaagaccatccagaccat	10	10	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93496623	T	T	93496623	2	4	97	1	0	0	0	0	0	0	0	1	3356	407	15	5		5	CHD2	15	93496623	Silent	SNP	A	TCGA-38-4626-01A-01D-1553-08	10942621	93496623	9034769	485	97603											
CHSY1	22856	broad.mit.edu	37	chr15	101717776	101717776	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggatggtggacgtggacTactcctacttcctggctcct	11	12	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101717776	G	G	101717776	2	3	97	1	0	0	0	0	0	0	0	1	3443	1509	53	5		5	CHSY1	15	101717776	Silent	SNP	T	TCGA-38-4626-01A-01D-1553-08	8221153	101717776	813616	486	97604											
TSC2	7249	broad.mit.edu	37	chr16	2122317	2122317	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctataaagtgctcatctttActtccccttgcagtgtggac	8	11	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2122317	T	T	2122317	3	4	97	1	0	0	0	0	1	0	0	0	16731	391	14	5	2247	5	TSC2	16	2122317	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08		2122317	88232436	487	97605											
GRIN2A	2903	broad.mit.edu	37	chr16	9943738	9943738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgagatggttgtcatcCggctcacagtcggagaagga	14	8	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9943738	A	A	9943738	2	1	97	1	0	0	0	0	0	0	0	1	6845	639	23	1		1	GRIN2A	16	9943738	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	7821421	9943738	80411015	488	97606											
MYH11	4629	broad.mit.edu	37	chr16	15892589	15892589	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccatgaattaaaatgagcTctgagctaagggtctggact	11	7	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15892589	C	C	15892589	1	2	97	0	1	0	0	0	0	0	0	0	10125	1566	54	5		5	MYH11	16	15892589	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	5948851	15892589	74462164	489	97607											
USP31	57478	broad.mit.edu	37	chr16	23101909	23101909	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatactgaactgttacaGtctaggtacttactggaaaa	8	6	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23101909	A	A	23101909	1	1	97	0	1	0	0	0	0	0	0	0	17189	1044	36	4		4	USP31	16	23101909	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	7209320	23101909	67252844	490	97608											
GTF3C1	2975	broad.mit.edu	37	chr16	27492447	27492447	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggatttcaaggttagaattCcttagggctgaactgaactt	11	6	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27492447	T	T	27492447	2	4	97	1	0	0	0	0	0	0	0	1	6937	854	30	4		4	GTF3C1	16	27492447	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	4390538	27492447	62862306	491	97609											
ITGAL	3683	broad.mit.edu	37	chr16	30529243	30529243	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgctcctaagagatgtggAgctgctgtgggggccccaat	14	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30529243	G	G	30529243	1	3	97	0	1	0	0	0	0	0	0	0	7956	319	11	5		5	ITGAL	16	30529243	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	3036796	30529243	59825510	492	97610											
ITGAX	3687	broad.mit.edu	37	chr16	31384712	31384712	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacgtggcagagggccagGtgcaccctctggggaaggag	18	10	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31384712	T	T	31384712	5	4	97	1	0	0	0	0	0	0	1	0	7959	1275	44	3	2587	3	ITGAX	16	31384712	Splice_Site	SNP	G	TCGA-38-4626-01A-01D-1553-08	855469	31384712	58970041	493	97611											
ITGAD	3681	broad.mit.edu	37	chr16	31425592	31425592	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatccatccatccatccatCcatccatccatccatcatct	0	20	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31425592	T	T	31425592	1	4	97	0	1	0	0	0	0	0	0	0	7954	870	30	4		4	ITGAD	16	31425592	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	40880	31425592	58929161	494	97612											
ITGAD	3681	broad.mit.edu	37	chr16	31435089	31435089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcatctgttccccacccCaaacctgaccatattttttc	3	16	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31435089	A	A	31435089	1	1	97	0	1	0	0	0	0	0	0	0	7954	609	21	2		2	ITGAD	16	31435089	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	9497	31435089	58919664	495	97613											
ABCC11	85320	broad.mit.edu	37	chr16	48210974	48210974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccatgctgtggccacccCtggggacaacttgtgccttc	10	16	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48210974	A	A	48210974	3	1	97	1	0	0	0	0	1	0	0	0	51	680	24	2	773	2	ABCC11	16	48210974	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	16775885	48210974	42143779	496	97614											
CDH11	1009	broad.mit.edu	37	chr16	65005896	65005896	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accttcataaggggcagcaaActtgggagcattatcgttga	11	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65005896	C	C	65005896	3	2	97	1	0	0	0	0	1	0	0	0	3127	43	2	5	944	5	CDH11	16	65005896	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	16794922	65005896	25348857	497	97615											
ZNF23	7571	broad.mit.edu	37	chr16	71482488	71482488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtaaagcatctcccacaCtcattacattcaaaaggttt	5	10	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71482488	A	A	71482488	3	1	97	1	0	0	0	0	1	0	0	0	17909	564	20	3	495	3	ZNF23	16	71482488	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	6476592	71482488	18872265	498	97616											
NECAB2	54550	broad.mit.edu	37	chr16	84024276	84024276	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtcccatgggggtatgcCgtgcacgcgcacgtgcccac	15	14	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84024276	A	A	84024276	1	1	97	0	1	0	0	0	0	0	0	0	10400	667	23	1		1	NECAB2	16	84024276	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	12541788	84024276	6330477	499	97617											
MBTPS1	8720	broad.mit.edu	37	chr16	84125475	84125475	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagttaaatattataacagtCtgcttagtgtttcaatcaag	6	5	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84125475	A	A	84125475	1	1	97	0	1	0	0	0	0	0	0	0	9454	928	32	3		3	MBTPS1	16	84125475	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	101199	84125475	6229278	500	97618											
ATP2C2	9914	broad.mit.edu	37	chr16	84456035	84456036	+	Frame_Shift_Ins	INS	-	A	A													tgaatccagtttcaccggggINSaagccgagccatgtagtaaa							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84456036	A	A	84456035	7	5	97	1	0	1	1	0	0	0	0	0	1148	1175	41	0	694	0	ATP2C2	16	84456035	Frame_Shift_Ins	INS	-	TCGA-38-4626-01A-01D-1553-08	330560	84456035	5898718	501	97619											
TCF25	22980	broad.mit.edu	37	chr16	89967042	89967042	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttcttcgtccctcgtaGgctcatcggaacctgtccca	8	15	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89967042	T	T	89967042	5	4	97	1	0	0	0	0	0	0	1	0	15815	1014	35	2	1267	2	TCF25	16	89967042	Splice_Site	SNP	G	TCGA-38-4626-01A-01D-1553-08	5511007	89967042	387711	502	97620											
PRPF8	10594	broad.mit.edu	37	chr17	1579293	1579293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtgggggttatcgtaggCctgctcgatcagacctagct	13	11	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1579293	A	A	1579293	3	1	97	1	0	0	0	0	1	0	0	0	12681	739	26	3	4503	3	PRPF8	17	1579293	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08		1579293	79615917	503	97621											
MYH8	4626	broad.mit.edu	37	chr17	10322188	10322188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacatgaaataaaaaggtGtttacagacactcacgtaga	9	6	1	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10322188	T	T	10322188	1	4	97	0	1	0	0	0	0	0	0	0	10135	1392	48	3		3	MYH8	17	10322188	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	8742895	10322188	70873022	504	97622											
CDRT4	284040	broad.mit.edu	37	chr17	15343482	15343482	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatcctccaaccctagacgGccccagtgcaggagcttcca	9	16	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15343482	C	C	15343482	1	2	97	0	1	0	0	0	0	0	0	0	3206	1218	42	4		4	CDRT4	17	15343482	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	5021294	15343482	65851728	505	97623											
TRPV2	51393	broad.mit.edu	37	chr17	16326965	16326965	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcactggtgaccagcatgTatgatgggctcctccaagct	11	11	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16326965	C	C	16326965	3	2	97	1	0	0	0	0	1	0	0	0	16721	1638	57	5	822	5	TRPV2	17	16326965	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	983483	16326965	64868245	506	97624											
LGALS9	3965	broad.mit.edu	37	chr17	25958138	25958138	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacccagtaccatacctttCtctctctggacccacttcct	3	19	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25958138	A	A	25958138	1	1	97	0	1	0	0	0	0	0	0	0	8820	928	32	3		3	LGALS9	17	25958138	5'Flank	SNP	C	TCGA-38-4626-01A-01D-1553-08	9631173	25958138	55237072	507	97625											
CCT6B	10693	broad.mit.edu	37	chr17	33288403	33288403	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggagttgacggcctttaTcgcagccatagcctaaccgt	10	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33288403	C	C	33288403	3	2	97	1	0	0	0	0	1	0	0	0	2988	1435	50	5	1638	5	CCT6B	17	33288403	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	7330265	33288403	47906807	508	97626											
CCL3	6348	broad.mit.edu	37	chr17	34416497	34416497	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaccctgaccctccctacctCcatagaggtgagcaggaaga	9	14	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34416497	A	A	34416497	1	1	97	0	1	0	0	0	0	0	0	0	2929	870	30	3		3	CCL3	17	34416497	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1128094	34416497	46778713	509	97627											
WIPF2	147179	broad.mit.edu	37	chr17	38416822	38416822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagctgagtagagatgaGcagcggggtcgaggcgccct	16	11	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38416822	T	T	38416822	3	4	97	1	0	0	0	0	1	0	0	0	17495	962	34	3	105	3	WIPF2	17	38416822	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	4000325	38416822	42778388	510	97628											
RAMP2	10266	broad.mit.edu	37	chr17	40914762	40914762	+	Frame_Shift_Del	DEL	C	-	-													gtgcagcccaccttctctgaCcccccagaggatgtactcct							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40914762	-	-	40914762	7	5	97	1	0	1	0	1	0	0	0	0	13130	506	18	0	434	0	RAMP2	17	40914762	Frame_Shift_Del	DEL	C	TCGA-38-4626-01A-01D-1553-08	2497940	40914762	40280448	511	97629											
SLC4A1	6521	broad.mit.edu	37	chr17	42334955	42334955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcagtcaaagggtcttgGggcaaggcaccatgcatcag	14	10	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42334955	T	T	42334955	1	4	97	0	1	0	0	0	0	0	0	0	14764	1247	43	2		2	SLC4A1	17	42334955	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1420193	42334955	38860255	512	97630											
EFTUD2	9343	broad.mit.edu	37	chr17	42949677	42949677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaaggccacaaagacccCcaaatgtgataataacaggt	7	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42949677	A	A	42949677	1	1	97	0	1	0	0	0	0	0	0	0	5001	638	22	2		2	EFTUD2	17	42949677	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	614722	42949677	38245533	513	97631											
DCAKD	79877	broad.mit.edu	37	chr17	43131430	43131430	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgagtccctgaaagctTtcttcctgacttcaacagtc	6	14	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43131430	G	G	43131430	1	3	97	0	1	0	0	0	0	0	0	0	4312	1856	64	5		5	DCAKD	17	43131430	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	181753	43131430	38063780	514	97632											
CRHR1	1394	broad.mit.edu	37	chr17	43906655	43906655	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtatctccctggtggccctCctggtggcctttgtcctctt	10	14	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43906655	G	G	43906655	2	3	97	1	0	0	0	0	0	0	0	1	3903	842	30	4		4	CRHR1	17	43906655	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	775225	43906655	37288555	515	97633											
KIAA1267	284058	broad.mit.edu	37	chr17	44249162	44249162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctcggagttcataggaCtgagataagagaggatgaga	14	5	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44249162	A	A	44249162	3	1	97	1	0	0	0	0	1	0	0	0	8289	564	20	3	3025	3	KIAA1267	17	44249162	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	342507	44249162	36946048	516	97634											
KPNB1	3837	broad.mit.edu	37	chr17	45752095	45752095	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgttccaaagcacagctgGgtctgggggagtacaagagg	16	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45752095	C	C	45752095	3	2	97	1	0	0	0	0	1	0	0	0	8506	1232	43	4	1917	4	KPNB1	17	45752095	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1502933	45752095	35443115	517	97635											
STXBP4	252983	broad.mit.edu	37	chr17	53155418	53155418	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaagaaatgtgtaaatgctCcttttgatatctctgtgcag	9	6	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53155418	T	T	53155418	1	4	97	0	1	0	0	0	0	0	0	0	15473	870	30	4		4	STXBP4	17	53155418	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	7403323	53155418	28039792	518	97636											
EPX	8288	broad.mit.edu	37	chr17	56270502	56270502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagaagaggtggacttgGgtctgggggctgcatgggcc	18	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56270502	T	T	56270502	1	4	97	0	1	0	0	0	0	0	0	0	5242	1247	43	2		2	EPX	17	56270502	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3115084	56270502	24924708	519	97637											
KCNH6	81033	broad.mit.edu	37	chr17	61622973	61622973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttgctcctcccagaccCcaagctatggagacttggat	8	13	1	2	rs143517235		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61622973	A	A	61622973	3	1	97	1	0	0	0	0	1	0	0	0	8106	623	22	2	2749	2	KCNH6	17	61622973	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	5352471	61622973	19572237	520	97638											
GH2	2689	broad.mit.edu	37	chr17	61958049	61958049	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtcagcgcctgactgctaAaaagagggcagcagtgtttc	14	9	1	2	rs141158489		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61958049	C	C	61958049	1	2	97	0	1	0	0	0	0	0	0	0	6432	14	1	5		5	GH2	17	61958049	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	335076	61958049	19237161	521	97639											
CCDC46	201134	broad.mit.edu	37	chr17	63822325	63822325	+	Intron	DEL	G	-	-													cttcctgcctgctctgtcttGgggacattaccattctcttc							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63822325	-	-	63822325	6	5	97	0	1	1	0	1	0	0	0	0	2845	1335	47	0		0	CCDC46	17	63822325	Intron	DEL	G	TCGA-38-4626-01A-01D-1553-08	1864276	63822325	17372885	522	97640											
KCNJ16	3773	broad.mit.edu	37	chr17	68128403	68128403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatggggaagctatgtgGttgacatcttcaccactctt	11	8	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68128403	T	T	68128403	3	4	97	1	0	0	0	0	1	0	0	0	8120	1261	44	3	177	3	KCNJ16	17	68128403	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	4306078	68128403	13066807	523	97641											
MGAT5B	146664	broad.mit.edu	37	chr17	74899330	74899330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccgcacgcaggcctccCtccctgggctcctccttgga	9	21	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74899330	A	A	74899330	1	1	97	0	1	0	0	0	0	0	0	0	9642	696	24	2		2	MGAT5B	17	74899330	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	6770927	74899330	6295880	524	97642											
RPTOR	57521	broad.mit.edu	37	chr17	78681815	78681815	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaggtgggtgtgccttccAgcttccttcccgtttctgcc	10	14	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78681815	T	T	78681815	1	4	97	0	1	0	0	0	0	0	0	0	13776	203	7	5		5	RPTOR	17	78681815	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	3782485	78681815	2513395	525	97643											
EPB41L3	23136	broad.mit.edu	37	chr18	5428374	5428374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatctttagaaccttggGccaggcaaatctgtttattc	8	8	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5428374	T	T	5428374	3	4	97	1	0	0	0	0	1	0	0	0	5196	1203	42	3	2316	3	EPB41L3	18	5428374	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08		5428374	72648874	526	97644											
KIAA0802	23255	broad.mit.edu	37	chr18	8793132	8793132	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccataaggtaaatatttaacAcggactcagcacaaccgctt	6	11	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8793132	C	C	8793132	1	2	97	0	1	0	0	0	0	0	0	0	8264	174	6	5		5	KIAA0802	18	8793132	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	3364758	8793132	69284116	527	97645											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851650	14851650	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatactttgaggacattaAgattttacaagaaaagaatg	7	3	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14851650	T	T	14851650	3	4	97	1	0	0	0	0	1	0	0	0	659	72	3	5	3492	5	ANKRD30B	18	14851650	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	6058518	14851650	63225598	528	97646											
SS18	6760	broad.mit.edu	37	chr18	23612330	23612330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcgagagtgaagaaacaaTgtggcaattctgcagccggt	12	7	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23612330	A	A	23612330	1	1	97	0	1	0	0	0	0	0	0	0	15293	1479	51	5		5	SS18	18	23612330	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	8760680	23612330	54464918	529	97647											
DSC1	1823	broad.mit.edu	37	chr18	28737519	28737519	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattaggctggccgacttgaGacactcctccagattcactg	10	12	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28737519	T	T	28737519	3	4	97	1	0	0	0	0	1	0	0	0	4805	942	33	3	2614	3	DSC1	18	28737519	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	5125189	28737519	49339729	530	97648											
PIGN	23556	broad.mit.edu	37	chr18	59777144	59777144	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggacaggcttgaatcagCagaaaaaatgctactaaaat	9	7	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59777144	G	G	59777144	2	3	97	1	0	0	0	0	0	0	0	1	11988	697	25	4		4	PIGN	18	59777144	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	31039625	59777144	18300104	531	97649											
SERPINB13	5275	broad.mit.edu	37	chr18	61264592	61264592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttcggcagattttcttctCcttaagatgatcgttgccat	7	10	3	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61264592	A	A	61264592	3	1	97	1	0	0	0	0	1	0	0	0	14213	855	30	3	1197	3	SERPINB13	18	61264592	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1487448	61264592	16812656	532	97650											
SERPINB4	6318	broad.mit.edu	37	chr18	61306540	61306540	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcaaaattaaaggaattgTattgcctcatcatctgtaca	7	7	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61306540	A	A	61306540	3	1	97	1	0	0	0	0	1	0	0	0	14216	1638	57	5	533	5	SERPINB4	18	61306540	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	41948	61306540	16770708	533	97651											
SERPINB2	5055	broad.mit.edu	37	chr18	61562436	61562436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagccacctgatagccatcTgttttaaaagttcagtaaat	7	8	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61562436	A	A	61562436	1	1	97	0	1	0	0	0	0	0	0	0	14214	1595	55	5		5	SERPINB2	18	61562436	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	255896	61562436	16514812	534	97652											
CTDP1	9150	broad.mit.edu	37	chr18	77470451	77470451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttaggtatgtacccagccGcgctcctcacaaagacctcg	8	16	1	1	rs62097743	by1000genomes	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77470451	T	T	77470451	1	4	97	0	1	0	0	0	0	0	0	0	4036	1102	38	3		3	CTDP1	18	77470451	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	15908015	77470451	606797	535	97653											
POLRMT	5442	broad.mit.edu	37	chr19	625204	625204	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagcaggtccggagtcaaGccggcatccttcaccatgaa	11	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	625204	A	A	625204	2	1	97	1	0	0	0	0	0	0	0	1	12333	958	34	4		4	POLRMT	19	625204	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08		625204	58503779	536	97654											
FSD1	79187	broad.mit.edu	37	chr19	4306112	4306112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcagccttaggaactggCccattgctgttgatgcctgt	13	10	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4306112	A	A	4306112	1	1	97	0	1	0	0	0	0	0	0	0	6130	754	26	3		3	FSD1	19	4306112	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	3680908	4306112	54822871	537	97655											
FBN3	84467	broad.mit.edu	37	chr19	8161029	8161029	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggggaacttggggagtgaGaggccagctggacctagcac	17	8	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8161029	C	C	8161029	1	2	97	0	1	0	0	0	0	0	0	0	5761	957	33	4		4	FBN3	19	8161029	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	3854917	8161029	50967954	538	97656											
MUC16	94025	broad.mit.edu	37	chr19	9058299	9058299	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccacaaagcgagggctcGtccatgacagactttcagga	10	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9058299	A	A	9058299	3	1	97	1	0	0	0	0	1	0	0	0	10067	1145	40	4	14704	4	MUC16	19	9058299	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	897270	9058299	50070684	539	97657											
MUC16	94025	broad.mit.edu	37	chr19	9073838	9073838	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccatattggtcactgctttGtttatggaaggatgaatagt	10	6	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9073838	C	C	9073838	3	2	97	1	0	0	0	0	1	0	0	0	10067	1368	48	4	30243	4	MUC16	19	9073838	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	15539	9073838	50055145	540	97658											
OR7G2	390882	broad.mit.edu	37	chr19	9213200	9213200	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagaggtgagacccacaGgtggaaactgctttgtgctt	14	7	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9213200	T	T	9213200	2	4	97	1	0	0	0	0	0	0	0	1	11317	987	35	2		2	OR7G2	19	9213200	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	139362	9213200	49915783	541	97659											
ZNF559	84527	broad.mit.edu	37	chr19	9449258	9449258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttgacaaattactctcaGgtaagtaggaaattgctttt	9	5	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9449258	T	T	9449258	3	4	97	1	0	0	0	0	1	0	0	0	18117	1014	35	2	35	2	ZNF559	19	9449258	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	236058	9449258	49679725	542	97660											
ZNF560	147741	broad.mit.edu	37	chr19	9583990	9583990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaggccaggcacagtggCtcatgcctgtaatcccagca	11	14	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9583990	A	A	9583990	1	1	97	0	1	0	0	0	0	0	0	0	18118	812	28	3		3	ZNF560	19	9583990	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	134732	9583990	49544993	543	97661											
CD97	976	broad.mit.edu	37	chr19	14512216	14512216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaatgtcatcaaattggtgGatgaactgatggaagctcct	11	6	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14512216	A	A	14512216	3	1	97	1	0	0	0	0	1	0	0	0	3079	1174	41	4	954	4	CD97	19	14512216	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	4928226	14512216	44616767	544	97662											
NOTCH3	4854	broad.mit.edu	37	chr19	15295951	15295951	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcccaagctcctggaGggaaatgattgaaagcaaaa	9	11	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15295951	A	A	15295951	1	1	97	0	1	0	0	0	0	0	0	0	10645	1015	35	4		4	NOTCH3	19	15295951	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	783735	15295951	43833032	545	97663											
PIK3R2	5296	broad.mit.edu	37	chr19	18276920	18276920	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcctttacccctcacgaGggccttttggggagtcccag	12	13	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18276920	A	A	18276920	1	1	97	0	1	0	0	0	0	0	0	0	12014	1015	35	4		4	PIK3R2	19	18276920	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2980969	18276920	40852063	546	97664											
ZNF99	7652	broad.mit.edu	37	chr19	22940448	22940448	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagggtttctctgcagtatGaattaccttatgtacagtaa	9	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22940448	C	C	22940448	3	2	97	1	0	0	0	0	1	0	0	0	18333	1290	45	4	1134	4	ZNF99	19	22940448	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	4663528	22940448	36188535	547	97665											
HAUS5	23354	broad.mit.edu	37	chr19	36110835	36110835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccccagacccaccttgaaGttcctgggcccccagagcct	9	18	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36110835	T	T	36110835	1	4	97	0	1	0	0	0	0	0	0	0	7035	1044	36	3		3	HAUS5	19	36110835	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	13170387	36110835	23018148	548	97666											
EIF3K	27335	broad.mit.edu	37	chr19	39116585	39116585	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctttggaagaaagcagccAgaagaaggtaggtggggagg	18	4	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39116585	T	T	39116585	1	4	97	0	1	0	0	0	0	0	0	0	5063	203	7	5		5	EIF3K	19	39116585	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	3005750	39116585	20012398	549	97667											
ZNF546	339327	broad.mit.edu	37	chr19	40514427	40514427	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttattggagcaagagaaaGagccctggatagtaatgagg	13	5	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40514427	T	T	40514427	4	4	97	1	0	0	0	0	0	1	0	0	18105	943	33	3	363	3	ZNF546	19	40514427	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1397842	40514427	18614556	550	97668											
ATP1A3	478	broad.mit.edu	37	chr19	42490070	42490070	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggcactcggtctccaccCttgatctccaccaggtcccc	8	19	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42490070	T	T	42490070	2	4	97	1	0	0	0	0	0	0	0	1	1134	680	24	4		4	ATP1A3	19	42490070	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	1975643	42490070	16638913	551	97669											
PSG6	5675	broad.mit.edu	37	chr19	43414968	43414968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctccatgacctccctgGggtttaagttgctgctggag	12	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43414968	T	T	43414968	3	4	97	1	0	0	0	0	1	0	0	0	12765	1232	43	2	892	2	PSG6	19	43414968	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	924898	43414968	15714015	552	97670											
PSG4	5672	broad.mit.edu	37	chr19	43708212	43708212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatatataattctttgacCgtctactacatatgatgtaa	4	9	2	2	rs147299450	by1000genomes	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43708212	A	A	43708212	3	1	97	1	0	0	0	0	1	0	0	0	12763	652	23	1	1023	1	PSG4	19	43708212	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	293244	43708212	15420771	553	97671											
RTN2	6253	broad.mit.edu	37	chr19	45997242	45997242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcatgagccaccgcgcCcggccggggaaattttttta	12	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45997242	A	A	45997242	1	1	97	0	1	0	0	0	0	0	0	0	13837	638	22	2		2	RTN2	19	45997242	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2289030	45997242	13131741	554	97672											
AP2S1	1175	broad.mit.edu	37	chr19	47342740	47342740	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctccacgaagttgtgaatGgcctccaggtaagccaggtt	11	11	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47342740	A	A	47342740	2	1	97	1	0	0	0	0	0	0	0	1	745	1335	47	4		4	AP2S1	19	47342740	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	1345498	47342740	11786243	555	97673											
CABP5	56344	broad.mit.edu	37	chr19	48533866	48533866	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaaaaaaatccccagTaaggcatctcgttgtaaaag	7	7	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48533866	G	G	48533866	1	3	97	0	1	0	0	0	0	0	0	0	2560	1653	57	5		5	CABP5	19	48533866	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	1191126	48533866	10595117	556	97674											
CYTH2	9266	broad.mit.edu	37	chr19	48981446	48981446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtcctgggcggagtgGctgggagcctggactcctgg	20	10	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48981446	T	T	48981446	1	4	97	0	1	0	0	0	0	0	0	0	4237	1218	42	3		3	CYTH2	19	48981446	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	447580	48981446	10147537	557	97675											
SIGLEC9	27180	broad.mit.edu	37	chr19	51628841	51628841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctgatcctgagtccccCtctcttcaccagccttgacc	6	18	2	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51628841	A	A	51628841	1	1	97	0	1	0	0	0	0	0	0	0	14428	696	24	2		2	SIGLEC9	19	51628841	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	2647395	51628841	7500142	558	97676											
ZNF611	81856	broad.mit.edu	37	chr19	53207840	53207840	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgatctctgaaaaatttgCcacatttattacacttgtaa	4	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53207840	T	T	53207840	1	4	97	0	1	0	0	0	0	0	0	0	18164	754	26	4		4	ZNF611	19	53207840	3'UTR	SNP	C	TCGA-38-4626-01A-01D-1553-08	1578999	53207840	5921143	559	97677											
ZNF765	91661	broad.mit.edu	37	chr19	53911926	53911926	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcacattttacatgccAtcatagagttcatactggag	8	8	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53911926	T	T	53911926	3	4	97	1	0	0	0	0	1	0	0	0	18268	217	8	5	1128	5	ZNF765	19	53911926	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	704086	53911926	5217057	560	97678											
NLRP12	91662	broad.mit.edu	37	chr19	54299180	54299180	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtcggacacctgtgtcccCtagggcgttgttggtcaggt	14	11	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54299180	T	T	54299180	3	4	97	1	0	0	0	0	1	0	0	0	10569	681	24	4	162	4	NLRP12	19	54299180	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	387254	54299180	4829803	561	97679											
LILRB4	11006	broad.mit.edu	37	chr19	55179300	55179300	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacccccaccacgttccttCcctctcactctcccccgctg	3	25	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55179300	A	A	55179300	1	1	97	0	1	0	0	0	0	0	0	0	8865	870	30	3		3	LILRB4	19	55179300	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	880120	55179300	3949683	562	97680											
KIR2DL3	3804	broad.mit.edu	37	chr19	55278620	55278620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaacgtgagcaccctcCctcactcaggatttccctct	7	15	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55278620	A	A	55278620	1	1	97	0	1	0	0	0	0	0	0	0	8388	638	22	2		2	KIR2DL3	19	55278620	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	99320	55278620	3850363	563	97681											
NLRP8	126205	broad.mit.edu	37	chr19	56485017	56485017	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgcttctctcccataGgatagagaactgcaacctta	8	11	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56485017	C	C	56485017	5	2	97	1	0	0	0	0	0	0	1	0	10578	1014	35	4	2560	4	NLRP8	19	56485017	Splice_Site	SNP	G	TCGA-38-4626-01A-01D-1553-08	1206397	56485017	2643966	564	97682											
DUXA	503835	broad.mit.edu	37	chr19	57678865	57678865	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagacaagtcactctgCgcagagactgggttttatat	12	8	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57678865	G	G	57678865	1	3	97	0	1	0	0	0	0	0	0	0	4874	783	27	4		4	DUXA	19	57678865	5'Flank	SNP	C	TCGA-38-4626-01A-01D-1553-08	1193848	57678865	1450118	565	97683											
ZNF135	7694	broad.mit.edu	37	chr19	58579459	58579459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttcagccagcttgctcCcctcattcagcatcagagga	8	15	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58579459	A	A	58579459	3	1	97	1	0	0	0	0	1	0	0	0	17851	623	22	2	1810	2	ZNF135	19	58579459	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	900594	58579459	549524	566	97684											
HAO1	54363	broad.mit.edu	37	chr20	7894772	7894772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacattcccagtcaagatcCctttcgcctcagctcggggc	8	15	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7894772	A	A	7894772	1	1	97	0	1	0	0	0	0	0	0	0	7017	638	22	2		2	HAO1	20	7894772	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08		7894772	55130748	567	97685											
PAK7	57144	broad.mit.edu	37	chr20	9524980	9524980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtccctgagcctgtccCcagtcctgccacgcctatga	10	16	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9524980	A	A	9524980	1	1	97	0	1	0	0	0	0	0	0	0	11499	638	22	2		2	PAK7	20	9524980	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1630208	9524980	53500540	568	97686											
KIF16B	55614	broad.mit.edu	37	chr20	16355030	16355030	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctcataaatcttctgtttCagctgctggatttcatattc	5	10	5	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16355030	A	A	16355030	2	1	97	1	0	0	0	0	0	0	0	1	8348	813	29	3		3	KIF16B	20	16355030	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	6830050	16355030	46670490	569	97687											
C20orf79	140856	broad.mit.edu	37	chr20	18794626	18794626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacattaggcttcacatcaGggaagtgggagctcaattgg	14	7	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18794626	T	T	18794626	3	4	97	1	0	0	0	0	1	0	0	0	2141	1000	35	2	169	2	C20orf79	20	18794626	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2439596	18794626	44230894	570	97688											
XKR7	343702	broad.mit.edu	37	chr20	30584922	30584922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggcccacccgctgacGccatcacgagtccccccagg	10	20	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30584922	T	T	30584922	3	4	97	1	0	0	0	0	1	0	0	0	17563	1087	38	3	1412	3	XKR7	20	30584922	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	11790296	30584922	32440598	571	97689											
C20orf186	149954	broad.mit.edu	37	chr20	31690778	31690778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgttttcttcgtctacagGaccagcctcaacctcagaac	7	14	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31690778	T	T	31690778	3	4	97	1	0	0	0	0	1	0	0	0	2120	1188	41	3	1688	3	C20orf186	20	31690778	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1105856	31690778	31334742	572	97690											
MYH7B	57644	broad.mit.edu	37	chr20	33584585	33584585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggtggggcagcaggtGggggccttctgagcctgcac	20	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33584585	A	A	33584585	1	1	97	0	1	0	0	0	0	0	0	0	10134	1363	47	4		4	MYH7B	20	33584585	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1893807	33584585	29440935	573	97691											
DLGAP4	22839	broad.mit.edu	37	chr20	35071470	35071470	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactccaggactcctgccctCctctctcctcccagaaagcc	5	20	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35071470	T	T	35071470	1	4	97	0	1	0	0	0	0	0	0	0	4602	870	30	4		4	DLGAP4	20	35071470	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1486885	35071470	27954050	574	97692											
TGM2	7052	broad.mit.edu	37	chr20	36784514	36784514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagggagaagcagtagcCgtgagctaggggtagcaggg	21	5	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36784514	A	A	36784514	1	1	97	0	1	0	0	0	0	0	0	0	15953	667	23	1		1	TGM2	20	36784514	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1713044	36784514	26241006	575	97693											
EMILIN3	90187	broad.mit.edu	37	chr20	39992319	39992319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtaggaagggggcctgGggcctgggtccagctgccct	18	11	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39992319	T	T	39992319	3	4	97	1	0	0	0	0	1	0	0	0	5137	1232	43	2	1835	2	EMILIN3	20	39992319	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	3207805	39992319	23033201	576	97694											
PTPRT	11122	broad.mit.edu	37	chr20	40748573	40748573	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggtggagggagggcacttAccttgagtcgcaatgtagtg	16	6	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40748573	T	T	40748573	5	4	97	1	0	0	0	0	0	0	1	0	12920	405	14	5	1487	5	PTPRT	20	40748573	Splice_Site	SNP	A	TCGA-38-4626-01A-01D-1553-08	756254	40748573	22276947	577	97695											
MYBL2	4605	broad.mit.edu	37	chr20	42331360	42331361	+	Missense_Mutation	DNP	CA	TT	TT													gagctgatccccatctccccCagcactgaagtcgggggctc							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42331361	TT	TT	42331360	3	4	97	1	0	0	0	0	1	0	0	0	10104	581	21	4	1212	4	MYBL2	20	42331360	Missense_Mutation	DNP	CA	TCGA-38-4626-01A-01D-1553-08	1582787	42331360	20694160	578	97696											
SLC12A5	57468	broad.mit.edu	37	chr20	44672622	44672622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggggtgggtatagaaGgctgagttctgggaaacaga	20	3	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44672622	T	T	44672622	1	4	97	0	1	0	0	0	0	0	0	0	14499	1015	35	2		2	SLC12A5	20	44672622	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	2341262	44672622	18352898	579	97697											
EYA2	2139	broad.mit.edu	37	chr20	45630119	45630119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcttctccaggtgagtGccattcacttgtctcctgct	8	14	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45630119	T	T	45630119	1	4	97	0	1	0	0	0	0	0	0	0	5372	1334	46	3		3	EYA2	20	45630119	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	957497	45630119	17395401	580	97698											
ATP9A	10079	broad.mit.edu	37	chr20	50226743	50226743	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggatgtcaccaaaagtcatGacaaaatcccttacatttac	5	10	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50226743	T	T	50226743	1	4	97	0	1	0	0	0	0	0	0	0	1202	1305	45	3		3	ATP9A	20	50226743	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	4596624	50226743	12798777	581	97699											
BMP7	655	broad.mit.edu	37	chr20	55803312	55803312	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgctcctggagcacctgaTaaacgctgatccggaacgtc	11	12	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55803312	C	C	55803312	3	2	97	1	0	0	0	0	1	0	0	0	1471	1406	49	5	735	5	BMP7	20	55803312	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	5576569	55803312	7222208	582	97700											
STX16	8675	broad.mit.edu	37	chr20	57245566	57245566	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaattcctatctgtgatAggcatgaagaatcgagagga	11	5	1	5			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57245566	C	C	57245566	5	2	97	1	0	0	0	0	0	0	1	0	15457	434	15	5	577	5	STX16	20	57245566	Splice_Site	SNP	A	TCGA-38-4626-01A-01D-1553-08	1442254	57245566	5779954	583	97701											
LAMA5	3911	broad.mit.edu	37	chr20	60904253	60904253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataggatttatccaggggCtcctcccggaggtagccaaa	11	11	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60904253	A	A	60904253	3	1	97	1	0	0	0	0	1	0	0	0	8681	796	28	3	7103	3	LAMA5	20	60904253	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3658687	60904253	2121267	584	97702											
OGFR	11054	broad.mit.edu	37	chr20	61445049	61445049	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctgtccctgctgcagGggctggggcctccggagctg	15	15	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61445049	T	T	61445049	1	4	97	0	1	0	0	0	0	0	0	0	10938	1247	43	2		2	OGFR	20	61445049	3'UTR	SNP	G	TCGA-38-4626-01A-01D-1553-08	540796	61445049	1580471	585	97703											
TPTE	7179	broad.mit.edu	37	chr21	10971750	10971750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctcctgcccaagagttGcggccaagtagctggaggcc	13	13	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971750	T	T	10971750	1	4	97	0	1	0	0	0	0	0	0	0	16554	1334	46	3		3	TPTE	21	10971750	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08		10971750	37158145	586	97704											
LIPI	149998	broad.mit.edu	37	chr21	15537620	15537620	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaatctttgtatgaacgAcaaggaaatgaaataaaatt	7	3	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15537620	T	T	15537620	4	4	97	1	0	0	0	0	0	1	0	0	8898	273	10	5	577	5	LIPI	21	15537620	Nonsense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	4565870	15537620	32592275	587	97705											
NCAM2	4685	broad.mit.edu	37	chr21	22696660	22696660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaaatgatggtagtgaaGgtgttttcgtctctatttat	9	5	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22696660	T	T	22696660	1	4	97	0	1	0	0	0	0	0	0	0	10298	1015	35	2		2	NCAM2	21	22696660	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	7159040	22696660	25433235	588	97706											
APP	351	broad.mit.edu	37	chr21	27425719	27425720	+	Intron	DNP	CC	AT	AT													tctgtatcacagtgttcttaCcgcagaagacatcaaggaaa							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	27425720	AT	AT	27425719	1	1	97	0	1	0	0	0	0	0	0	0	817	522	18	3		3	APP	21	27425719	Intron	DNP	CC	TCGA-38-4626-01A-01D-1553-08	4729059	27425719	20704176	589	97707											
ADAMTS5	11096	broad.mit.edu	37	chr21	28306829	28306829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccacacatttgccctgcaGgcagattctcccctttccac	6	17	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28306829	T	T	28306829	3	4	97	1	0	0	0	0	1	0	0	0	269	991	35	2	1167	2	ADAMTS5	21	28306829	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	881110	28306829	19823066	590	97708											
KRTAP26-1	388818	broad.mit.edu	37	chr21	31692128	31692128	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaccgcaagaggtttcaaGattgccggtctcacagtgga	12	9	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31692128	T	T	31692128	3	4	97	1	0	0	0	0	1	0	0	0	8615	942	33	3	410	3	KRTAP26-1	21	31692128	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	3385299	31692128	16437767	591	97709											
KRTAP19-3	337970	broad.mit.edu	37	chr21	31864089	31864089	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcggtagcagccatatcCgtagcctccgaagccagagc	13	13	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31864089	A	A	31864089	4	1	97	1	0	0	0	0	0	1	0	0	8601	661	23	1	62	1	KRTAP19-3	21	31864089	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	171961	31864089	16265806	592	97710											
MORC3	23515	broad.mit.edu	37	chr21	37741309	37741309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacggagactttctactcGttcctcaattttgaatgcaa	7	9	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37741309	T	T	37741309	3	4	97	1	0	0	0	0	1	0	0	0	9797	1145	40	3	1701	3	MORC3	21	37741309	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	5877220	37741309	10388586	593	97711											
TRAPPC10	7109	broad.mit.edu	37	chr21	45522849	45522849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacactcctcccaactggaCgctggtaaggactttggaag	11	12	0	0	rs146580471		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45522849	T	T	45522849	2	4	97	1	0	0	0	0	0	0	0	1	16581	535	19	4		4	TRAPPC10	21	45522849	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	7781540	45522849	2607046	594	97712											
KRTAP10-10	353333	broad.mit.edu	37	chr21	46057462	46057462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttgaccctggtctgcaCcccagtgagctgtgtgtcca	11	14	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46057462	A	A	46057462	3	1	97	1	0	0	0	0	1	0	0	0	8577	507	18	3	130	3	KRTAP10-10	21	46057462	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	534613	46057462	2072433	595	97713											
ITGB2	3689	broad.mit.edu	37	chr21	46309915	46309915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgccgcagacctggccGttgtagcgctcacagttgat	14	13	1	2	rs61747606	byFrequency	TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46309915	T	T	46309915	3	4	97	1	0	0	0	0	1	0	0	0	7964	1136	40	3	694	3	ITGB2	21	46309915	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	252453	46309915	1819980	596	97714											
POTEH	23784	broad.mit.edu	37	chr22	16287660	16287660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcccacgttgctcttgcCgctccccctgcaccagggga	11	17	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287660	A	A	16287660	3	1	97	1	0	0	0	0	1	0	0	0	12363	652	23	1	1451	1	POTEH	22	16287660	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08		16287660	35016906	597	97715											
IL17RA	23765	broad.mit.edu	37	chr22	17577832	17577832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcctattccccaaaaaGtgagaagggcaggctgtgta	10	10	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17577832	T	T	17577832	1	4	97	0	1	0	0	0	0	0	0	0	7709	1044	36	3		3	IL17RA	22	17577832	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1290172	17577832	33726734	598	97716											
PPIL2	23759	broad.mit.edu	37	chr22	22035675	22035675	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccggcaacgtctacgcctAtgaggtgtgtcctcgctccg	12	14	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22035675	G	G	22035675	3	3	97	1	0	0	0	0	1	0	0	0	12428	449	16	5	409	5	PPIL2	22	22035675	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	4457843	22035675	29268891	599	97717											
PIWIL3	440822	broad.mit.edu	37	chr22	25123956	25123956	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttgcaacaaatcctgctAttgatttctgtcgatttacg	6	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25123956	G	G	25123956	3	3	97	1	0	0	0	0	1	0	0	0	12054	449	16	5	675	5	PIWIL3	22	25123956	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	3088281	25123956	26180610	600	97718											
TBC1D10A	83874	broad.mit.edu	37	chr22	30688804	30688804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgaatgaggtgttcgcGctcaatctggcgctctgtca	12	11	4	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30688804	T	T	30688804	3	4	97	1	0	0	0	0	1	0	0	0	15717	1087	38	3	443	3	TBC1D10A	22	30688804	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	5564848	30688804	20615762	601	97719											
C22orf30	253143	broad.mit.edu	37	chr22	32108284	32108284	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgaagagcctctgcatGgtaggcatgtggctggagaa	15	7	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32108284	T	T	32108284	2	4	97	1	0	0	0	0	0	0	0	1	2164	1335	47	2		2	C22orf30	22	32108284	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	1419480	32108284	19196282	602	97720											
SLC5A1	6523	broad.mit.edu	37	chr22	32445885	32445885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttttggctggcaaggcCactcttctagttttcgatta	9	10	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32445885	A	A	32445885	1	1	97	0	1	0	0	0	0	0	0	0	14775	609	21	2		2	SLC5A1	22	32445885	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	337601	32445885	18858681	603	97721											
MXRA5	25878	broad.mit.edu	37	chrX	3240239	3240239	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgcttgtgccggtggcGgaatttgttggggcgtaatc	17	6	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3240239	A	A	3240239	3	1	97	1	0	0	0	0	1	0	0	0	10097	1116	39	4	5011	4	MXRA5	23	3240239	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08		3240239	152030321	604	97722											
MID1	4281	broad.mit.edu	37	chrX	10437633	10437633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaagtcaataaatattgtGtgttctttccttccttgtct	6	8	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10437633	T	T	10437633	1	4	97	0	1	0	0	0	0	0	0	0	9669	1392	48	3		3	MID1	23	10437633	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	7197394	10437633	144832927	605	97723											
ARHGAP6	395	broad.mit.edu	37	chrX	11312993	11312993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccttgcataagtcagtGtccaatttcacaaacttgga	6	12	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11312993	T	T	11312993	1	4	97	0	1	0	0	0	0	0	0	0	889	1392	48	3		3	ARHGAP6	23	11312993	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	875360	11312993	143957567	606	97724											
FRMPD4	9758	broad.mit.edu	37	chrX	12738518	12738518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagtctttggaaagcaGggtgaccttagcatcggcag	15	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12738518	T	T	12738518	1	4	97	0	1	0	0	0	0	0	0	0	6119	1015	35	2		2	FRMPD4	23	12738518	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1425525	12738518	142532042	607	97725											
REPS2	9185	broad.mit.edu	37	chrX	17065626	17065626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagaatgtgggctccctaGgcatcactctcaccagaaca	9	12	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17065626	T	T	17065626	1	4	97	0	1	0	0	0	0	0	0	0	13337	1015	35	2		2	REPS2	23	17065626	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	4327108	17065626	138204934	608	97726											
PHKA2	5256	broad.mit.edu	37	chrX	18944494	18944494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagaacttacgtatatcaCagtctccctcagaccccaaa	4	13	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18944494	A	A	18944494	1	1	97	0	1	0	0	0	0	0	0	0	11939	493	17	3		3	PHKA2	23	18944494	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1878868	18944494	136326066	609	97727											
PHKA2	5256	broad.mit.edu	37	chrX	18972504	18972504	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccttctgctcatggctGgctgacagcagccccgtgac	11	15	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18972504	T	T	18972504	2	4	97	1	0	0	0	0	0	0	0	1	11939	1335	47	2		2	PHKA2	23	18972504	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	28010	18972504	136298056	610	97728											
PTCHD1	139411	broad.mit.edu	37	chrX	23412216	23412216	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaggaaagagaagaaaAatcctgagaaccgggaggaa	12	4	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23412216	T	T	23412216	3	4	97	1	0	0	0	0	1	0	0	0	12838	14	1	5	2591	5	PTCHD1	23	23412216	Missense_Mutation	SNP	A	TCGA-38-4626-01A-01D-1553-08	4439712	23412216	131858344	611	97729											
APOO	79135	broad.mit.edu	37	chrX	23886820	23886820	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgtctacaatagaattaGaccaggaagcagttccataa	8	8	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23886820	C	C	23886820	1	2	97	0	1	0	0	0	0	0	0	0	815	957	33	4		4	APOO	23	23886820	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	474604	23886820	131383740	612	97730											
POLA1	5422	broad.mit.edu	37	chrX	24906286	24906286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtagaagagggtagaggGctgcttgctttgagaagtag	16	4	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24906286	T	T	24906286	1	4	97	0	1	0	0	0	0	0	0	0	12282	1218	42	3		3	POLA1	23	24906286	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1019466	24906286	130364274	613	97731											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29938086	29938086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcttaaggagcatcttgGggaacaggaagtttccatct	10	7	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29938086	T	T	29938086	3	4	97	1	0	0	0	0	1	0	0	0	7731	1232	43	2	958	2	IL1RAPL1	23	29938086	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	5031800	29938086	125332474	614	97732											
DMD	1756	broad.mit.edu	37	chrX	31747957	31747957	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtacaattgtgagaccagCcaaaacacttttagaaataa	6	7	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31747957	G	G	31747957	1	3	97	0	1	0	0	0	0	0	0	0	4620	754	26	4		4	DMD	23	31747957	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1809871	31747957	123522603	615	97733											
DMD	1756	broad.mit.edu	37	chrX	32382758	32382758	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgattcatccaaaagtgtgtCagcctgaatgatccactttg	8	9	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32382758	T	T	32382758	3	4	97	1	0	0	0	0	1	0	0	0	4620	826	29	4	6286	4	DMD	23	32382758	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	634801	32382758	122887802	616	97734											
FAM47A	158724	broad.mit.edu	37	chrX	34149300	34149300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgacgagtcttgggagGcgctaggcggagacgggaca	17	12	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34149300	T	T	34149300	3	4	97	1	0	0	0	0	1	0	0	0	5620	1203	42	3	1283	3	FAM47A	23	34149300	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1766542	34149300	121121260	617	97735											
FAM47C	442444	broad.mit.edu	37	chrX	37028015	37028015	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacgcgtatctcatctccGcccagagccttctgagactg	9	15	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37028015	A	A	37028015	3	1	97	1	0	0	0	0	1	0	0	0	5622	1087	38	4	1534	4	FAM47C	23	37028015	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2878715	37028015	118242545	618	97736											
SYTL5	94122	broad.mit.edu	37	chrX	37965979	37965979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacatttttgtcaagaattGcagaaatctggccataggag	10	6	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37965979	T	T	37965979	3	4	97	1	0	0	0	0	1	0	0	0	15605	1319	46	3	1397	3	SYTL5	23	37965979	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	937964	37965979	117304581	619	97737											
RPGR	6103	broad.mit.edu	37	chrX	38132700	38132700	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttttctaggatttctaatGaactgctatctgcatcatca	6	8	5	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38132700	C	C	38132700	4	2	97	1	0	0	0	0	0	1	0	0	13659	1294	45	4	275	4	RPGR	23	38132700	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	166721	38132700	117137860	620	97738											
RPGR	6103	broad.mit.edu	37	chrX	38169932	38169932	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttctccggaatttcagaCaccagctggggtgttctgtg	11	11	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38169932	A	A	38169932	2	1	97	1	0	0	0	0	0	0	0	1	13659	465	17	3		3	RPGR	23	38169932	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	37232	38169932	117100628	621	97739											
BCOR	54880	broad.mit.edu	37	chrX	39931720	39931720	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgattctctttgccagcttaGatggcttcggtttcagaact	9	10	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39931720	T	T	39931720	3	4	97	1	0	0	0	0	1	0	0	0	1391	942	33	3	2436	3	BCOR	23	39931720	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1761788	39931720	115338840	622	97740											
DUSP21	63904	broad.mit.edu	37	chrX	44703492	44703492	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaatggtgtggccgccaaCgacaaactccttctgtccag	10	13	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44703492	G	G	44703492	3	3	97	1	0	0	0	0	1	0	0	0	4860	535	19	4	116	4	DUSP21	23	44703492	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	4771772	44703492	110567068	623	97741											
ZNF673	55634	broad.mit.edu	37	chrX	46315355	46315355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcccaggaggtgaattgGctgtaggaagtaataagact	15	5	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46315355	T	T	46315355	1	4	97	0	1	0	0	0	0	0	0	0	18207	1218	42	3		3	ZNF673	23	46315355	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	1611863	46315355	108955205	624	97742											
RBM10	8241	broad.mit.edu	37	chrX	47034362	47034362	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccgcccccgggaacgccGtgtgtccaaagctgttgact	12	15	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47034362	A	A	47034362	1	1	97	0	1	0	0	0	0	0	0	0	13219	1160	40	4		4	RBM10	23	47034362	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	719007	47034362	108236198	625	97743											
SSX3	10214	broad.mit.edu	37	chrX	48218134	48218134	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagatggctggctgttgatCatgaaaatgtcagacctgat	12	6	2	5			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48218134	A	A	48218134	1	1	97	0	1	0	0	0	0	0	0	0	15323	841	29	3		3	SSX3	23	48218134	5'Flank	SNP	C	TCGA-38-4626-01A-01D-1553-08	1183772	48218134	107052426	626	97744											
CLCN5	1184	broad.mit.edu	37	chrX	49845313	49845313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggctctcctatttgccttCcttgccgtatctcttgtcaa	7	13	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49845313	A	A	49845313	3	1	97	1	0	0	0	0	1	0	0	0	3497	854	30	3	688	3	CLCN5	23	49845313	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1627179	49845313	105425247	627	97745											
KDM5C	8242	broad.mit.edu	37	chrX	53241142	53241142	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggcaaagaggtgaagaatCctcccaagtggaactggaat	13	7	0	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53241142	A	A	53241142	1	1	97	0	1	0	0	0	0	0	0	0	8205	870	30	3		3	KDM5C	23	53241142	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	3395829	53241142	102029418	628	97746											
HEPH	9843	broad.mit.edu	37	chrX	65411882	65411882	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agagtagtggagggtgggtgGaggaaacactaacagaagga	18	3	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65411882	C	C	65411882	1	2	97	0	1	0	0	0	0	0	0	0	7121	1189	41	4		4	HEPH	23	65411882	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	12170740	65411882	89858678	629	97747											
STARD8	9754	broad.mit.edu	37	chrX	67943764	67943765	+	Intron	DNP	CC	AA	AA													accagcactaggaatctgagCctacgtgtcccttctccaat							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	67943765	AA	AA	67943764	1	1	97	0	1	0	0	0	0	0	0	0	15381	754	26	3		3	STARD8	23	67943764	Intron	DNP	CC	TCGA-38-4626-01A-01D-1553-08	2531882	67943764	87326796	630	97748											
DGAT2L6	347516	broad.mit.edu	37	chrX	69397412	69397412	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggttaggcttcttgccaCaacagaacagcaccataacc	7	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69397412	A	A	69397412	1	1	97	0	1	0	0	0	0	0	0	0	4499	493	17	3		3	DGAT2L6	23	69397412	5'UTR	SNP	C	TCGA-38-4626-01A-01D-1553-08	1453648	69397412	85873148	631	97749											
ZMYM3	9203	broad.mit.edu	37	chrX	70471019	70471019	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtcacacttcctcaaatCctacttactgctctcagtgg	6	14	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70471019	A	A	70471019	1	1	97	0	1	0	0	0	0	0	0	0	17827	870	30	3		3	ZMYM3	23	70471019	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1073607	70471019	84799541	632	97750											
TAF1	6872	broad.mit.edu	37	chrX	70677997	70677997	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaactgaattgctctgcatGatctttttctccagtaaatg	6	8	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70677997	T	T	70677997	1	4	97	0	1	0	0	0	0	0	0	0	15632	1305	45	3		3	TAF1	23	70677997	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	206978	70677997	84592563	633	97751											
ATRX	546	broad.mit.edu	37	chrX	76856100	76856100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaagtttctagattaggaGttttaatcttacttgtgaca	7	6	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76856100	A	A	76856100	1	1	97	0	1	0	0	0	0	0	0	0	1212	1044	36	4		4	ATRX	23	76856100	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	6178103	76856100	78414460	634	97752											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912683	77912683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagctggtggactctcgGgtccatctccctctgcagag	11	13	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77912683	T	T	77912683	3	4	97	1	0	0	0	0	1	0	0	0	17717	1232	43	2	196	2	ZCCHC5	23	77912683	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	1056583	77912683	77357877	635	97753											
LPAR4	2846	broad.mit.edu	37	chrX	78010954	78010954	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaggcttctccaaacgtgtCtggaagacttatttatccaa	8	9	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78010954	G	G	78010954	2	3	97	1	0	0	0	0	0	0	0	1	8994	900	32	4		4	LPAR4	23	78010954	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	98271	78010954	77259606	636	97754											
GPR174	84636	broad.mit.edu	37	chrX	78426662	78426662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatatgaaagaaacaaaacGagctgtgatatttatgataa	7	3	0	4			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78426662	T	T	78426662	3	4	97	1	0	0	0	0	1	0	0	0	6737	1058	37	3	160	3	GPR174	23	78426662	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	415708	78426662	76843898	637	97755											
CYLC1	1538	broad.mit.edu	37	chrX	83128563	83128563	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctttgaagtatacaaagTatacaaagaaggacacaaaa	6	5	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83128563	A	A	83128563	3	1	97	1	0	0	0	0	1	0	0	0	4174	1638	57	5	861	5	CYLC1	23	83128563	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	4701901	83128563	72141997	638	97756											
RPS6KA6	27330	broad.mit.edu	37	chrX	83372409	83372409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttaatatcatattcatGgtctcatttctgtctttacc	3	9	5	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83372409	T	T	83372409	2	4	97	1	0	0	0	0	0	0	0	1	13766	1335	47	2		2	RPS6KA6	23	83372409	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	243846	83372409	71898151	639	97757											
SATL1	340562	broad.mit.edu	37	chrX	84363147	84363147	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcttgcactccattggttCatgtccatttggttcatacc	8	11	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84363147	A	A	84363147	3	1	97	1	0	0	0	0	1	0	0	0	13967	826	29	3	1090	3	SATL1	23	84363147	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	990738	84363147	70907413	640	97758											
POF1B	79983	broad.mit.edu	37	chrX	84586074	84586074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttttcagggccatcatcCtgaattatcacctgaagcaa	6	10	3	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84586074	A	A	84586074	3	1	97	1	0	0	0	0	1	0	0	0	12277	680	24	2	1078	2	POF1B	23	84586074	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	222927	84586074	70684486	641	97759											
DACH2	117154	broad.mit.edu	37	chrX	85415594	85415594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatggttcaggatgatcaCctgagcagtgatgccggctg	15	8	2	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85415594	A	A	85415594	1	1	97	0	1	0	0	0	0	0	0	0	4254	522	18	3		3	DACH2	23	85415594	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	829520	85415594	69854966	642	97760											
TRMT2B	79979	broad.mit.edu	37	chrX	100291990	100291990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcccaggtagaaccccaCagtctttggattgccatctg	9	12	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100291990	A	A	100291990	3	1	97	1	0	0	0	0	1	0	0	0	16691	478	17	3	1039	3	TRMT2B	23	100291990	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	14876396	100291990	54978570	643	97761											
GLA	2717	broad.mit.edu	37	chrX	100662735	100662735	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcctggcagtcaaggtTgcacatgaagcgctcccagt	10	13	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100662735	A	A	100662735	3	1	97	1	0	0	0	0	1	0	0	0	6490	1812	63	5	1160	5	GLA	23	100662735	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	370745	100662735	54607825	644	97762											
NXF5	55998	broad.mit.edu	37	chrX	101093396	101093396	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccgtcctggagaaggaaaGaggaagtcagcagtggagac	17	7	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101093396	T	T	101093396	1	4	97	0	1	0	0	0	0	0	0	0	10881	957	33	3		3	NXF5	23	101093396	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	430661	101093396	54177164	645	97763											
NXF5	55998	broad.mit.edu	37	chrX	101096045	101096045	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatgcagtttcttcgattCaggattatatcaatgtcacg	8	9	4	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101096045	A	A	101096045	2	1	97	1	0	0	0	0	0	0	0	1	10881	813	29	3		3	NXF5	23	101096045	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	2649	101096045	54174515	646	97764											
NXF5	55998	broad.mit.edu	37	chrX	101096677	101096677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcatcataaatcttataaCtgacatccttcaatgcagag	4	10	4	2	rs145492861		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101096677	T	T	101096677	3	4	97	1	0	0	0	0	1	0	0	0	10881	565	20	4	936	4	NXF5	23	101096677	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	632	101096677	54173883	647	97765											
GPRASP1	9737	broad.mit.edu	37	chrX	101911404	101911404	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaagaagaggccagtccgGaggcagtggcaggagtcggc	20	8	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101911404	T	T	101911404	4	4	97	1	0	0	0	0	0	1	0	0	6788	1175	41	3	2565	3	GPRASP1	23	101911404	Nonsense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	814727	101911404	53359156	648	97766											
NXF3	56000	broad.mit.edu	37	chrX	102338133	102338133	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttacctttatctgctcCaccttttctgacttcagctc	5	13	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102338133	A	A	102338133	2	1	97	1	0	0	0	0	0	0	0	1	10880	581	21	2		2	NXF3	23	102338133	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	426729	102338133	52932427	649	97767											
TBC1D8B	54885	broad.mit.edu	37	chrX	106117037	106117037	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagaaagatccttgttccTttagggaggaacctcagtgg	13	7	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106117037	A	A	106117037	3	1	97	1	0	0	0	0	1	0	0	0	15748	1609	56	5	3353	5	TBC1D8B	23	106117037	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	3778904	106117037	49153523	650	97768											
NUP62CL	54830	broad.mit.edu	37	chrX	106374914	106374914	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggatggagaagaggaggaaGaggaggagcagttggttcta	19	2	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106374914	T	T	106374914	1	4	97	0	1	0	0	0	0	0	0	0	10864	957	33	3		3	NUP62CL	23	106374914	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	257877	106374914	48895646	651	97769											
TEX13B	56156	broad.mit.edu	37	chrX	107224961	107224961	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctccgcaaggctggtctCggttagctgcaactggaagg	13	12	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107224961	T	T	107224961	3	4	97	1	0	0	0	0	1	0	0	0	15899	893	31	4	549	4	TEX13B	23	107224961	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	850047	107224961	48045599	652	97770											
ATG4A	115201	broad.mit.edu	37	chrX	107377577	107377577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaaaaacagcacaaatgGgtgtaggagaagggaaatca	11	5	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107377577	T	T	107377577	3	4	97	1	0	0	0	0	1	0	0	0	1100	1232	43	2	425	2	ATG4A	23	107377577	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	152616	107377577	47892983	653	97771											
COL4A6	1288	broad.mit.edu	37	chrX	107421879	107421879	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccagggcctagctgaagtCtgtcaaggtgggactcttcc	13	12	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107421879	G	G	107421879	1	3	97	0	1	0	0	0	0	0	0	0	3727	928	32	4		4	COL4A6	23	107421879	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	44302	107421879	47848681	654	97772											
RGAG1	57529	broad.mit.edu	37	chrX	109695829	109695829	+	Frame_Shift_Del	DEL	G	-	-													tgccgcaaatgacagacacaGcctctggagggttgtctgca							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109695829	-	-	109695829	7	5	97	1	0	1	0	1	0	0	0	0	13382	971	34	0	1986	0	RGAG1	23	109695829	Frame_Shift_Del	DEL	G	TCGA-38-4626-01A-01D-1553-08	2273950	109695829	45574731	655	97773											
ALG13	79868	broad.mit.edu	37	chrX	110925492	110925492	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attccttgaaagaagacattCagaaagcagatcttgttatt	7	6	2	5			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110925492	T	T	110925492	4	4	97	1	0	0	0	0	0	1	0	0	515	827	29	4	220	4	ALG13	23	110925492	Nonsense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1229663	110925492	44345068	656	97774											
HTR2C	3358	broad.mit.edu	37	chrX	114141513	114141513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccatgcaggctatcaaCaatgaaagaaaagcttcgaa	9	9	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114141513	A	A	114141513	3	1	97	1	0	0	0	0	1	0	0	0	7513	477	17	3	926	3	HTR2C	23	114141513	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3216021	114141513	41129047	657	97775											
HTR2C	3358	broad.mit.edu	37	chrX	114141543	114141543	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagcttcgaaagtccttggGattgttttctttgtgtttct	9	6	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114141543	A	A	114141543	2	1	97	1	0	0	0	0	0	0	0	1	7513	1161	41	4		4	HTR2C	23	114141543	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	30	114141543	41129017	658	97776											
KLHL13	90293	broad.mit.edu	37	chrX	117079444	117079444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtaaagatgcgtgtagGtcctgccttggaagactgca	14	8	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117079444	T	T	117079444	3	4	97	1	0	0	0	0	1	0	0	0	8440	1261	44	3	1798	3	KLHL13	23	117079444	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	2937901	117079444	38191116	659	97777											
KIAA1210	57481	broad.mit.edu	37	chrX	118284538	118284538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaggcgtccagccggccCtcatttccccgcgtagagtt	11	16	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118284538	A	A	118284538	3	1	97	1	0	0	0	0	1	0	0	0	8284	681	24	2	5180	2	KIAA1210	23	118284538	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1205094	118284538	36986022	660	97778											
SEPT6	23157	broad.mit.edu	37	chrX	118767556	118767556	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctctgtcctcccttccCcagttgtgagccaggtacaa	8	15	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118767556	A	A	118767556	1	1	97	0	1	0	0	0	0	0	0	0	14181	638	22	2		2	SEPT6	23	118767556	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	483018	118767556	36503004	661	97779											
XIAP	331	broad.mit.edu	37	chrX	123019764	123019764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagcagttggaagacacagGaaagtatccccaaattgcag	10	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123019764	T	T	123019764	3	4	97	1	0	0	0	0	1	0	0	0	17555	1165	41	3	254	3	XIAP	23	123019764	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	4252208	123019764	32250796	662	97780											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298618	125298618	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagcagtgggtgtagagCgcattggggaactctcccat	14	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298618	A	A	125298618	2	1	97	1	0	0	0	0	0	0	0	1	4298	755	27	3		3	DCAF12L2	23	125298618	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	2278854	125298618	29971942	663	97781											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298934	125298934	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaggagacgtgggactgaGagcccacagcgtacagggac	17	9	0	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125298934	C	C	125298934	3	2	97	1	0	0	0	0	1	0	0	0	4298	942	33	4	421	4	DCAF12L2	23	125298934	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	316	125298934	29971626	664	97782											
XPNPEP2	7512	broad.mit.edu	37	chrX	128889338	128889338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtctgaatgctgccctggCccactacaggtacttgagga	12	11	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128889338	A	A	128889338	3	1	97	1	0	0	0	0	1	0	0	0	17570	739	26	3	1336	3	XPNPEP2	23	128889338	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3590404	128889338	26381222	665	97783											
XPNPEP2	7512	broad.mit.edu	37	chrX	128890485	128890485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggagctgaaccgcaagCtgtcctcagatgagatgtac	11	11	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128890485	A	A	128890485	3	1	97	1	0	0	0	0	1	0	0	0	17570	796	28	3	1375	3	XPNPEP2	23	128890485	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1147	128890485	26380075	666	97784											
ZDHHC9	51114	broad.mit.edu	37	chrX	128975899	128975899	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccatttccgtgtcaccttcTttctcaccaccatcacagac	3	18	4	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128975899	A	A	128975899	3	1	97	1	0	0	0	0	1	0	0	0	17748	1609	56	5	1107	5	ZDHHC9	23	128975899	Missense_Mutation	SNP	T	TCGA-38-4626-01A-01D-1553-08	85414	128975899	26294661	667	97785											
BCORL1	63035	broad.mit.edu	37	chrX	129147341	129147341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttaccactaacttcagtcCtctgccagcccctatctgtc	6	16	3	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129147341	A	A	129147341	3	1	97	1	0	0	0	0	1	0	0	0	1392	681	24	2	603	2	BCORL1	23	129147341	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	171442	129147341	26123219	668	97786											
AIFM1	9131	broad.mit.edu	37	chrX	129270251	129270251	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatgccattaagaattGggactttaaaaaatcatggg	8	7	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129270251	A	A	129270251	1	1	97	0	1	0	0	0	0	0	0	0	426	1363	47	4		4	AIFM1	23	129270251	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	122910	129270251	26000309	669	97787											
AIFM1	9131	broad.mit.edu	37	chrX	129271011	129271011	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtttgccttaggtcacactCaaaggaaatagagtggcagc	11	8	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129271011	A	A	129271011	1	1	97	0	1	0	0	0	0	0	0	0	426	841	29	3		3	AIFM1	23	129271011	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	760	129271011	25999549	670	97788											
IGSF1	3547	broad.mit.edu	37	chrX	130408104	130408104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctatggctagcactacCcccaaggctacaacaaccac	5	17	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130408104	A	A	130408104	2	1	97	1	0	0	0	0	0	0	0	1	7666	610	22	2		2	IGSF1	23	130408104	Silent	SNP	C	TCGA-38-4626-01A-01D-1553-08	1137093	130408104	24862456	671	97789											
USP26	83844	broad.mit.edu	37	chrX	132159958	132159958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgtgtgcccctgggtgCctggctttggaaagctttga	13	9	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132159958	A	A	132159958	3	1	97	1	0	0	0	0	1	0	0	0	17183	739	26	3	453	3	USP26	23	132159958	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1751854	132159958	23110602	672	97790											
GPC4	2239	broad.mit.edu	37	chrX	132438835	132438835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcgttgcaaacgttgctcgGaagggaggaccagaatttct	12	8	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132438835	T	T	132438835	3	4	97	1	0	0	0	0	1	0	0	0	6665	1174	41	3	472	3	GPC4	23	132438835	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	278877	132438835	22831725	673	97791											
GPC3	2719	broad.mit.edu	37	chrX	132795752	132795752	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attattattttttatattccAcatacctggttaatgtgctt	4	6	0	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132795752	T	T	132795752	1	4	97	0	1	0	0	0	0	0	0	0	6664	174	6	5		5	GPC3	23	132795752	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	356917	132795752	22474808	674	97792											
GPR112	139378	broad.mit.edu	37	chrX	135482265	135482265	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatccttaaattttgtctAgttggttggggtaagtatat	9	3	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135482265	T	T	135482265	2	4	97	1	0	0	0	0	0	0	0	1	6694	407	15	5		5	GPR112	23	135482265	Silent	SNP	A	TCGA-38-4626-01A-01D-1553-08	2686513	135482265	19788295	675	97793											
MAGEC1	9947	broad.mit.edu	37	chrX	140993218	140993218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggatatgcctactgctGggatgccgagtcttctccag	11	11	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140993218	T	T	140993218	3	4	97	1	0	0	0	0	1	0	0	0	9272	1348	47	2	34	2	MAGEC1	23	140993218	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	5510953	140993218	14277342	676	97794											
SLITRK4	139065	broad.mit.edu	37	chrX	142717341	142717341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcccatgggttgccctcCaagtcaatctgtgtaagaga	10	11	2	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142717341	A	A	142717341	3	1	97	1	0	0	0	0	1	0	0	0	14859	593	21	2	933	2	SLITRK4	23	142717341	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	1724123	142717341	12553219	677	97795											
SLITRK2	84631	broad.mit.edu	37	chrX	144904119	144904119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagttagcctgctccagcCcccccagtatcgaatctatc	6	16	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144904119	A	A	144904119	3	1	97	1	0	0	0	0	1	0	0	0	14857	623	22	2	178	2	SLITRK2	23	144904119	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	2186778	144904119	10366441	678	97796											
IDS	3423	broad.mit.edu	37	chrX	148568624	148568624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatgttcacctagagCccaccctagttcataaaaag	5	13	3	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148568624	A	A	148568624	3	1	97	1	0	0	0	0	1	0	0	0	7573	739	26	3	648	3	IDS	23	148568624	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	3664505	148568624	6701936	679	97797											
MAGEA8	4107	broad.mit.edu	37	chrX	149013858	149013858	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccggcagtgatcctgtgcGctacgagttcctgtggggtc	15	12	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149013858	A	A	149013858	3	1	97	1	0	0	0	0	1	0	0	0	9261	1087	38	4	814	4	MAGEA8	23	149013858	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	445234	149013858	6256702	680	97798											
PASD1	139135	broad.mit.edu	37	chrX	150828402	150828402	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatgaatataatgctctaTaatactgtgaaatcccagag	6	7	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150828402	C	C	150828402	1	2	97	0	1	0	0	0	0	0	0	0	11565	1421	49	5		5	PASD1	23	150828402	Intron	SNP	T	TCGA-38-4626-01A-01D-1553-08	1814544	150828402	4442158	681	97799											
CNGA2	1260	broad.mit.edu	37	chrX	150908236	150908236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctatgggactcaaatgGgctttaagcatgcaatggaa	11	8	1	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150908236	T	T	150908236	1	4	97	0	1	0	0	0	0	0	0	0	3629	1247	43	2		2	CNGA2	23	150908236	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	79834	150908236	4362324	682	97800											
GABRA3	2556	broad.mit.edu	37	chrX	151393209	151393209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaggcaaaaaaaaaagaCagagagagagagagaaaata	11	3	1	5			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151393209	A	A	151393209	1	1	97	0	1	0	0	0	0	0	0	0	6222	493	17	3		3	GABRA3	23	151393209	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	484973	151393209	3877351	683	97801											
GABRQ	55879	broad.mit.edu	37	chrX	151819145	151819145	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagtgtgtgactaactacAcaggcaaggaaataaggatt	10	6	0	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151819145	G	G	151819145	1	3	97	0	1	0	0	0	0	0	0	0	6235	174	6	5		5	GABRQ	23	151819145	Intron	SNP	A	TCGA-38-4626-01A-01D-1553-08	425936	151819145	3451415	684	97802											
MAGEA1	4100	broad.mit.edu	37	chrX	152482377	152482378	+	Nonsense_Mutation	DNP	CC	AA	AA													cagctcctcccagatttcctCctcaggagcatggccgccct							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152482378	AA	AA	152482377	4	1	97	1	0	0	0	0	0	1	0	0	9251	864	30	3	299	3	MAGEA1	23	152482377	Nonsense_Mutation	DNP	CC	TCGA-38-4626-01A-01D-1553-08	663232	152482377	2788183	685	97803											
ATP2B3	492	broad.mit.edu	37	chrX	152807850	152807850	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcgacgagagctccctgaCgggcgagtctgaccacgtgc	14	13	1	3			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152807850	G	G	152807850	3	3	97	1	0	0	0	0	1	0	0	0	1145	536	19	4	748	4	ATP2B3	23	152807850	Missense_Mutation	SNP	C	TCGA-38-4626-01A-01D-1553-08	325473	152807850	2462710	686	97804											
L1CAM	3897	broad.mit.edu	37	chrX	153141232	153141232	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacattcctcggggatctgGataagcaggcaggggctgca	14	10	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153141232	A	A	153141232	2	1	97	1	0	0	0	0	0	0	0	1	8660	1164	41	4		4	L1CAM	23	153141232	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	333382	153141232	2129328	687	97805											
HCFC1	3054	broad.mit.edu	37	chrX	153218966	153218967	+	Intron	DNP	CT	AA	AA													gaccaggagcggccccatgcCtggtacaagagcgacatctg							TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	153218967	AA	AA	153218966	1	1	97	0	1	0	0	0	0	0	0	0	7057	696	24	2		2	HCFC1	23	153218966	Intron	DNP	CT	TCGA-38-4626-01A-01D-1553-08	77734	153218966	2051594	688	97806											
OPN1MW	2652	broad.mit.edu	37	chrX	153496193	153496193	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgatggctgccctgccGgccttctttgccaaaagtgc	10	14	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153496193	T	T	153496193	2	4	97	1	0	0	0	0	0	0	0	1	10972	1103	39	1		1	OPN1MW	23	153496193	Silent	SNP	G	TCGA-38-4626-01A-01D-1553-08	277227	153496193	1774367	689	97807											
TKTL1	8277	broad.mit.edu	37	chrX	153551614	153551614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttccgaaccattcccaaGtgcacgatcttctacccaac	5	15	2	0			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153551614	T	T	153551614	3	4	97	1	0	0	0	0	1	0	0	0	16058	1020	36	3	1282	3	TKTL1	23	153551614	Missense_Mutation	SNP	G	TCGA-38-4626-01A-01D-1553-08	55421	153551614	1718946	690	97808											
FLNA	2316	broad.mit.edu	37	chrX	153594893	153594893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggcctccagccactgcCtgaggtcacaagcctccccc	11	18	1	1			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153594893	A	A	153594893	1	1	97	0	1	0	0	0	0	0	0	0	5991	696	24	2		2	FLNA	23	153594893	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	43279	153594893	1675667	691	97809											
PLXNA3	55558	broad.mit.edu	37	chrX	153700006	153700006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcatccccacagactccCagttacttggtcctgaaggt	9	13	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153700006	A	A	153700006	1	1	97	0	1	0	0	0	0	0	0	0	12216	609	21	2		2	PLXNA3	23	153700006	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	105113	153700006	1570554	692	97810											
MPP1	4354	broad.mit.edu	37	chrX	154009497	154009497	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtgaactacccatcgcGcacaacctctcctcacctga	6	16	2	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154009497	C	C	154009497	1	2	97	0	1	0	0	0	0	0	0	0	9827	1102	38	4		4	MPP1	23	154009497	Intron	SNP	G	TCGA-38-4626-01A-01D-1553-08	309491	154009497	1261063	693	97811											
VAMP7	6845	broad.mit.edu	37	chrX	155119028	155119028	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgcctcgttagatactatCtccaggtagtatgttgataa	9	7	1	2			TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155119028	T	T	155119028	1	4	97	0	1	0	0	0	0	0	0	0	17244	928	32	4		4	VAMP7	23	155119028	Intron	SNP	C	TCGA-38-4626-01A-01D-1553-08	1109531	155119028	151532	694	97812											
NOC2L	26155	broad.mit.edu	37	chr1	888050	888050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccgcccactccagggccCctgtgaacacctgggccttt	9	19	0	1	rs113054826		TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	888050	A	A	888050	1	1	98	0	1	0	0	0	0	0	0	0	10608	638	22	2		2	NOC2L	1	888050	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08		888050	248362571	1	97813											
CHD5	26038	broad.mit.edu	37	chr1	6184515	6184515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgaccactgacccacaaGggacagcaccaggagcccag	10	16	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6184515	T	T	6184515	1	4	98	0	1	0	0	0	0	0	0	0	3359	1015	35	2		2	CHD5	1	6184515	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	5296465	6184515	243066106	2	97814											
CLCN6	1185	broad.mit.edu	37	chr1	11889224	11889224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagagcttctttctgtggCgttgtaacagctgtgctttg	11	9	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11889224	T	T	11889224	1	4	98	0	1	0	0	0	0	0	0	0	3498	783	27	4		4	CLCN6	1	11889224	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	5704709	11889224	237361397	3	97815											
HSPG2	3339	broad.mit.edu	37	chr1	22183533	22183533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtagagtggctgtgccCtggtccatggcaaacatgtt	12	9	0	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22183533	A	A	22183533	3	1	98	1	0	0	0	0	1	0	0	0	7500	680	24	2	7841	2	HSPG2	1	22183533	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	10294309	22183533	227067088	4	97816											
CSMD2	114784	broad.mit.edu	37	chr1	34071024	34071024	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagccagctcccctcacaatGccattggcaaagggctctgg	10	14	2	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34071024	A	A	34071024	2	1	98	1	0	0	0	0	0	0	0	1	3979	1306	46	4		4	CSMD2	1	34071024	Silent	SNP	G	TCGA-38-4627-01A-01D-1553-08	11887491	34071024	215179597	5	97817											
WDR77	79084	broad.mit.edu	37	chr1	111986759	111986759	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcatgagctataaaggagaGagaaagagaaatatgataga	12	2	0	6			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111986759	C	C	111986759	1	2	98	0	1	0	0	0	0	0	0	0	17454	957	33	4		4	WDR77	1	111986759	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	77915735	111986759	137263862	6	97818											
CD34	947	broad.mit.edu	37	chr1	208073342	208073342	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtcaagactcatgaacCcagaagctatagggaaacga	10	8	2	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208073342	T	T	208073342	3	4	98	1	0	0	0	0	1	0	0	0	3036	623	22	4	1118	4	CD34	1	208073342	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	96086583	208073342	41177279	7	97819											
PLXNA2	5362	broad.mit.edu	37	chr1	208225580	208225580	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaataacatggaggtgatgGggcaggcctatgaatgaaca	13	6	0	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208225580	A	A	208225580	1	1	98	0	1	0	0	0	0	0	0	0	12215	1247	43	4		4	PLXNA2	1	208225580	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	152238	208225580	41025041	8	97820											
ZNF692	55657	broad.mit.edu	37	chr1	249151919	249151919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgctccccaactcaccCcacccttcccaaacttactc	2	22	1	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249151919	A	A	249151919	1	1	98	0	1	0	0	0	0	0	0	0	18224	638	22	2		2	ZNF692	1	249151919	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	40926339	249151919	98702	9	97821											
TLK1	9874	broad.mit.edu	37	chr2	171906239	171906239	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagagtagcgaggaactggaGagcataattacaaatctata	10	6	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171906239	A	A	171906239	1	1	98	0	1	0	0	0	0	0	0	0	16066	957	33	4		4	TLK1	2	171906239	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08		171906239	71293134	10	97822											
TTN	7273	broad.mit.edu	37	chr2	179440815	179440815	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagtgttcttcgaagctcGgcatctagttcaaaatcagg	9	9	4	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179440815	A	A	179440815	2	1	98	1	0	0	0	0	0	0	0	1	16861	1103	39	4		4	TTN	2	179440815	Silent	SNP	G	TCGA-38-4627-01A-01D-1553-08	7534576	179440815	63758558	11	97823											
PMS1	5378	broad.mit.edu	37	chr2	190742066	190742066	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggacatccaagacattatCtacagaatgaagcaccagtt	8	9	1	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190742066	G	G	190742066	3	3	98	1	0	0	0	0	1	0	0	0	12237	903	32	4	2749	4	PMS1	2	190742066	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	11301251	190742066	52457307	12	97824											
RNF123	63891	broad.mit.edu	37	chr3	49737090	49737090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacttctccctcctcccCctccacacaggaggggcggc	8	20	2	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49737090	A	A	49737090	1	1	98	0	1	0	0	0	0	0	0	0	13544	638	22	2		2	RNF123	3	49737090	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08		49737090	148285340	13	97825											
TMEM110	375346	broad.mit.edu	37	chr3	52889347	52889347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaacaccataccccaccCccagccccaagacccccaac	2	25	0	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52889347	A	A	52889347	1	1	98	0	1	0	0	0	0	0	0	0	16150	638	22	2		2	TMEM110	3	52889347	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	3152257	52889347	145133083	14	97826											
GUCA1C	9626	broad.mit.edu	37	chr3	108635109	108635109	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaacttttctggaagcaaaTacattttgcaacatttctgc	5	9	3	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108635109	A	A	108635109	1	1	98	0	1	0	0	0	0	0	0	0	6955	1421	49	5		5	GUCA1C	3	108635109	Intron	SNP	T	TCGA-38-4627-01A-01D-1553-08	55745762	108635109	89387321	15	97827											
CPNE4	131034	broad.mit.edu	37	chr3	131404818	131404818	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatcctaaaatagataaacGtcaatgaattgtttttcctc	4	7	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131404818	A	A	131404818	1	1	98	0	1	0	0	0	0	0	0	0	3846	1160	40	4		4	CPNE4	3	131404818	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	22769709	131404818	66617612	16	97828											
RASA2	5922	broad.mit.edu	37	chr3	141295935	141295935	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctcatacttttcatttgcGacctcatcatccagtaagtg	5	12	4	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141295935	A	A	141295935	3	1	98	1	0	0	0	0	1	0	0	0	13169	1058	37	4	1635	4	RASA2	3	141295935	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	9891117	141295935	56726495	17	97829											
SLC9A9	285195	broad.mit.edu	37	chr3	143550932	143550932	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctcttttgtatttatattCataaacttggtcagtgatat	5	5	3	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143550932	A	A	143550932	4	1	98	1	0	0	0	0	0	1	0	0	14835	835	29	3	1690	3	SLC9A9	3	143550932	Nonsense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	2254997	143550932	54471498	18	97830											
DNAJB11	51726	broad.mit.edu	37	chr3	186303111	186303111	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catttttttgttaatggagtCatttgttcattctttcttca	5	6	5	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186303111	T	T	186303111	1	4	98	0	1	0	0	0	0	0	0	0	4656	841	29	4		4	DNAJB11	3	186303111	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	42752179	186303111	11719319	19	97831											
POLN	353497	broad.mit.edu	37	chr4	2083498	2083498	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacagagcaaaagtagatgAgggacagaaacaggcaccac	11	9	0	4			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2083498	G	G	2083498	1	3	98	0	1	0	0	0	0	0	0	0	12302	319	11	5		5	POLN	4	2083498	Intron	SNP	A	TCGA-38-4627-01A-01D-1553-08		2083498	189070778	20	97832											
GABRB1	2560	broad.mit.edu	37	chr4	47034148	47034148	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgcactataccctgggcaCacacacacacacacacacac	5	18	0	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47034148	G	G	47034148	1	3	98	0	1	0	0	0	0	0	0	0	6226	493	17	4		4	GABRB1	4	47034148	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	44950650	47034148	144120128	21	97833											
CDC23	8697	broad.mit.edu	37	chr5	137527959	137527959	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcaagtgaccaggcttaccGaagctggtgggcccgtctat	13	11	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137527959	A	A	137527959	4	1	98	1	0	0	0	0	0	1	0	0	3091	1072	37	4	532	4	CDC23	5	137527959	Nonsense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08		137527959	43387301	22	97834											
PCDH1	5097	broad.mit.edu	37	chr5	141233671	141233671	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggctgcgggtgggaagtccGaggtctgggtcagggggatt	21	6	2	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141233671	A	A	141233671	3	1	98	1	0	0	0	0	1	0	0	0	11600	1059	37	4	67	4	PCDH1	5	141233671	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	3705712	141233671	39681589	23	97835											
DOCK2	1794	broad.mit.edu	37	chr5	169138888	169138888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtaggggggtgcagtgGggagggccctttaactcatt	18	6	1	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169138888	T	T	169138888	1	4	98	0	1	0	0	0	0	0	0	0	4727	1247	43	2		2	DOCK2	5	169138888	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	27905217	169138888	11776372	24	97836											
CDKAL1	54901	broad.mit.edu	37	chr6	20758841	20758841	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccaggttcagcagatagatCgtgtggtagaagttgtggag	15	5	1	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20758841	T	T	20758841	3	4	98	1	0	0	0	0	1	0	0	0	3182	884	31	4	502	4	CDKAL1	6	20758841	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08		20758841	150356226	25	97837											
GPLD1	2822	broad.mit.edu	37	chr6	24467287	24467287	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaactgcctttgaataaGcagaatccataaatccaaaa	5	9	0	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24467287	A	A	24467287	1	1	98	0	1	0	0	0	0	0	0	0	6679	986	34	4		4	GPLD1	6	24467287	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	3708446	24467287	146647780	26	97838											
SLC17A1	6568	broad.mit.edu	37	chr6	25813423	25813423	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacgaaccagagaagacatAcggcacagccacaagcacct	9	13	0	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25813423	G	G	25813423	3	3	98	1	0	0	0	0	1	0	0	0	14529	391	14	5	792	5	SLC17A1	6	25813423	Missense_Mutation	SNP	A	TCGA-38-4627-01A-01D-1553-08	1346136	25813423	145301644	27	97839											
APOM	55937	broad.mit.edu	37	chr6	31625730	31625730	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagagccttagagactccCctttgacacagggaatgaaa	9	9	0	4			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31625730	A	A	31625730	1	1	98	0	1	0	0	0	0	0	0	0	814	638	22	2		2	APOM	6	31625730	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	5812307	31625730	139489337	28	97840											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33095786	33095786	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggaccttccagatcctggAgatgctggaaatgacccccc	10	14	0	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33095786	T	T	33095786	1	4	98	0	1	0	0	0	0	0	0	0	7270	319	11	5		5	HLA-DPB1	6	33095786	Intron	SNP	A	TCGA-38-4627-01A-01D-1553-08	1470056	33095786	138019281	29	97841											
PHF1	5252	broad.mit.edu	37	chr6	33380553	33380553	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaccggctggtcagctGtgagaagtgtcgccatggtg	17	8	1	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33380553	A	A	33380553	3	1	98	1	0	0	0	0	1	0	0	0	11915	1377	48	4	330	4	PHF1	6	33380553	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	284767	33380553	137734514	30	97842											
C6orf129	154467	broad.mit.edu	37	chr6	37450921	37450921	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgatcctgatcaagggGccaagtggaagcctgtgctg	14	9	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37450921	A	A	37450921	1	1	98	0	1	0	0	0	0	0	0	0	2351	1218	42	4		4	C6orf129	6	37450921	3'UTR	SNP	G	TCGA-38-4627-01A-01D-1553-08	4070368	37450921	133664146	31	97843											
TMEM106B	54664	broad.mit.edu	37	chr7	12270022	12270022	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcctttcagattgattAcacagtacctaccgttatag	6	9	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12270022	G	G	12270022	3	3	98	1	0	0	0	0	1	0	0	0	16144	391	14	5	608	5	TMEM106B	7	12270022	Missense_Mutation	SNP	A	TCGA-38-4627-01A-01D-1553-08		12270022	146868641	32	97844											
EGFR	1956	broad.mit.edu	37	chr7	55210075	55210075	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caataactgtgaggtggtccTtgggaatttggaaattacct	11	6	0	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55210075	G	G	55210075	3	3	98	1	0	0	0	0	1	0	0	0	5007	1609	56	5	191	5	EGFR	7	55210075	Missense_Mutation	SNP	T	TCGA-38-4627-01A-01D-1553-08	42940053	55210075	103928588	33	97845											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	98	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-38-4627-01A-01D-1553-08	49440	55259515	103879148	34	97846											
PRKAR2B	5577	broad.mit.edu	37	chr7	106768782	106768782	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatggctttgttttttccCccagtgacagtgtcaagaac	9	9	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106768782	A	A	106768782	1	1	98	0	1	0	0	0	0	0	0	0	12612	638	22	2		2	PRKAR2B	7	106768782	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	51509267	106768782	52369881	35	97847											
LAMB4	22798	broad.mit.edu	37	chr7	107720171	107720171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccatgtaacagggttccCaggaactggctctcctaaaa	9	11	1	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107720171	A	A	107720171	3	1	98	1	0	0	0	0	1	0	0	0	8685	594	21	2	3603	2	LAMB4	7	107720171	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	951389	107720171	51418492	36	97848											
ZNF425	155054	broad.mit.edu	37	chr7	148800831	148800831	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgaaggcacagatggGccttcaggcttctcttctgg	12	11	3	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148800831	A	A	148800831	3	1	98	1	0	0	0	0	1	0	0	0	18026	1203	42	4	130	4	ZNF425	7	148800831	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	41080660	148800831	10337832	37	97849											
KCNH2	3757	broad.mit.edu	37	chr7	150656629	150656629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatgagaccacgaaccCctgagcctgccctaaagcaa	8	13	0	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150656629	A	A	150656629	1	1	98	0	1	0	0	0	0	0	0	0	8102	638	22	2		2	KCNH2	7	150656629	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	1855798	150656629	8482034	38	97850											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885731	88885731	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgacgctgggagcagcaCggcacagcttggagtatctg	15	11	1	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885731	T	T	88885731	3	4	98	1	0	0	0	0	1	0	0	0	4305	536	19	4	722	4	DCAF4L2	8	88885731	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08		88885731	57478291	39	97851											
FER1L6	654463	broad.mit.edu	37	chr8	124975489	124975489	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacatgtcaatttcacaGgattttcttcctttgtttgc	5	11	3	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124975489	A	A	124975489	1	1	98	0	1	0	0	0	0	0	0	0	5872	1015	35	4		4	FER1L6	8	124975489	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	36089758	124975489	21388533	40	97852											
PHF20L1	51105	broad.mit.edu	37	chr8	133855032	133855032	+	Frame_Shift_Del	DEL	T	-	-													gagctcagatgatgatgatgTtagtagtttggaagaagaac							TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133855032	-	-	133855032	7	5	98	1	0	1	0	1	0	0	0	0	11927	1725	60	0	2826	0	PHF20L1	8	133855032	Frame_Shift_Del	DEL	T	TCGA-38-4627-01A-01D-1553-08	8879543	133855032	12508990	41	97853											
KIAA1797	54914	broad.mit.edu	37	chr9	20986383	20986383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgctgagcgttgctgtgCagcaccgtgagaaagaggtg	15	7	0	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20986383	A	A	20986383	3	1	98	1	0	0	0	0	1	0	0	0	8328	711	25	3	4979	3	KIAA1797	9	20986383	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08		20986383	120227048	42	97854											
MCART1	92014	broad.mit.edu	37	chr9	37886187	37886187	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtggcaagaaggtaatgCggcagccacagactgacaag	14	8	0	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37886187	T	T	37886187	1	4	98	0	1	0	0	0	0	0	0	0	9462	783	27	4		4	MCART1	9	37886187	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	16899804	37886187	103327244	43	97855											
TBC1D2	55357	broad.mit.edu	37	chr9	101014039	101014039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaccagagccctgggtgtGcaggcaggagggtagcccat	15	11	1	1	rs11417219		TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101014039	T	T	101014039	1	4	98	0	1	0	0	0	0	0	0	0	15727	1334	46	3		3	TBC1D2	9	101014039	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	63127852	101014039	40199392	44	97856											
PSMD5	5711	broad.mit.edu	37	chr9	123595863	123595863	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaacagcagctttcacTcacctactaaacatttgcta	4	11	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123595863	C	C	123595863	1	2	98	0	1	0	0	0	0	0	0	0	12807	1566	54	5		5	PSMD5	9	123595863	Intron	SNP	T	TCGA-38-4627-01A-01D-1553-08	22581824	123595863	17617568	45	97857											
RXRA	6256	broad.mit.edu	37	chr9	137328232	137328232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtatcagacacagccCcatccccagggaggcctcca	11	15	1	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137328232	A	A	137328232	1	1	98	0	1	0	0	0	0	0	0	0	13874	638	22	2		2	RXRA	9	137328232	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	13732369	137328232	3885199	46	97858											
CUBN	8029	broad.mit.edu	37	chr10	16932281	16932281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagacccccatactcctccCctagacccccaggtttagcc	6	19	0	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16932281	A	A	16932281	1	1	98	0	1	0	0	0	0	0	0	0	4084	638	22	2		2	CUBN	10	16932281	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08		16932281	118602466	47	97859											
PTPRE	5791	broad.mit.edu	37	chr10	129845793	129845794	+	Intron	INS	-	A	A													tgacttgccccaaccagctcINSagaggaggaaatgagccttc							TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129845794	A	A	129845793	6	5	98	0	1	1	1	0	0	0	0	0	12908	841	29	0		0	PTPRE	10	129845793	Intron	INS	-	TCGA-38-4627-01A-01D-1553-08	112913512	129845793	5688954	48	97860											
RAG1	5896	broad.mit.edu	37	chr11	36597479	36597479	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgagttaattccttcCgaggagaggcacgaggctct	13	8	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36597479	T	T	36597479	2	4	98	1	0	0	0	0	0	0	0	1	13111	639	23	4		4	RAG1	11	36597479	Silent	SNP	C	TCGA-38-4627-01A-01D-1553-08		36597479	98409037	49	97861											
OR5D14	219436	broad.mit.edu	37	chr11	55563607	55563608	+	Missense_Mutation	DNP	TG	AT	AT													ctcatctctgtgtctggctcTgatatactcatcccccacct					rs144571267	byFrequency	TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	55563608	AT	AT	55563607	3	1	98	1	0	0	0	0	1	0	0	0	11249	1567	55	5	578	5	OR5D14	11	55563607	Missense_Mutation	DNP	TG	TCGA-38-4627-01A-01D-1553-08	18966128	55563607	79442909	50	97862											
RELA	5970	broad.mit.edu	37	chr11	65427376	65427376	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgctggtgcgtgtgtgaaaCacaagtcctagaggaggcag	15	9	0	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65427376	T	T	65427376	1	4	98	0	1	0	0	0	0	0	0	0	13324	493	17	4		4	RELA	11	65427376	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	9863769	65427376	69579140	51	97863											
CCDC87	55231	broad.mit.edu	37	chr11	66360018	66360019	+	Frame_Shift_Ins	INS	-	G	G													gtgcagtccctggcgaggctINSggcggccaaccgggtgaggg							TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66360019	G	G	66360018	7	5	98	1	0	1	1	0	0	0	0	0	2890	1580	55	0	2084	0	CCDC87	11	66360018	Frame_Shift_Ins	INS	-	TCGA-38-4627-01A-01D-1553-08	932642	66360018	68646498	52	97864											
ARHGAP20	57569	broad.mit.edu	37	chr11	110477258	110477258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaaatttatgttcaagaaCgaaaacttttgctagaagca	6	6	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110477258	A	A	110477258	1	1	98	0	1	0	0	0	0	0	0	0	872	551	19	3		3	ARHGAP20	11	110477258	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	44117240	110477258	24529258	53	97865											
ALX1	8092	broad.mit.edu	37	chr12	85677431	85677431	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggacaactgtaacagtctccGaatgtctcccgtgaaaggga	11	10	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85677431	A	A	85677431	3	1	98	1	0	0	0	0	1	0	0	0	556	1058	37	4	314	4	ALX1	12	85677431	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08		85677431	48174464	54	97866											
APAF1	317	broad.mit.edu	37	chr12	99071361	99071361	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgagaaaaatgcaaagAggcatgtatccagttttgtg	10	6	1	2	rs142801831	by1000genomes	TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99071361	G	G	99071361	1	3	98	0	1	0	0	0	0	0	0	0	757	319	11	5		5	APAF1	12	99071361	Intron	SNP	A	TCGA-38-4627-01A-01D-1553-08	13393930	99071361	34780534	55	97867											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100496452	100496452	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttgatgggagagctgactGaaatagaggccatttgaggt	15	4	0	6			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100496452	T	T	100496452	1	4	98	0	1	0	0	0	0	0	0	0	17095	1305	45	3		3	UHRF1BP1L	12	100496452	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	1425091	100496452	33355443	56	97868											
GAS2L3	283431	broad.mit.edu	37	chr12	100977280	100977280	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accttagtcatttctttcttTcttccttccttccttccttt	1	14	4	0	rs138537044	by1000genomes	TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100977280	C	C	100977280	1	2	98	0	1	0	0	0	0	0	0	0	6310	1798	62	5		5	GAS2L3	12	100977280	Intron	SNP	T	TCGA-38-4627-01A-01D-1553-08	480828	100977280	32874615	57	97869											
DRAM1	55332	broad.mit.edu	37	chr12	102291789	102291789	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcatttgtagttttcatAtaatttttattttattttat	4	2	2	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102291789	G	G	102291789	1	3	98	0	1	0	0	0	0	0	0	0	4793	464	16	5		5	DRAM1	12	102291789	Intron	SNP	A	TCGA-38-4627-01A-01D-1553-08	1314509	102291789	31560106	58	97870											
STAB2	55576	broad.mit.edu	37	chr12	104093057	104093057	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaccgagaattacatcagGgagagtatgaggaatgagtg	14	6	1	4			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104093057	A	A	104093057	1	1	98	0	1	0	0	0	0	0	0	0	15356	1247	43	4		4	STAB2	12	104093057	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	1801268	104093057	29758838	59	97871											
KIAA0564	23078	broad.mit.edu	37	chr13	42265335	42265335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatatatagagatgctgCcaaacacagaaattgttaaa	6	7	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42265335	A	A	42265335	1	1	98	0	1	0	0	0	0	0	0	0	8255	754	26	3		3	KIAA0564	13	42265335	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08		42265335	72904543	60	97872											
KLHL1	57626	broad.mit.edu	37	chr13	70314633	70314633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccactgtattcagataGctccagccatcatggcctcc	6	15	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70314633	T	T	70314633	3	4	98	1	0	0	0	0	1	0	0	0	8436	962	34	3	567	3	KLHL1	13	70314633	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	28049298	70314633	44855245	61	97873											
OR4K17	390436	broad.mit.edu	37	chr14	20586121	20586121	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catggctcttgggtctccttCactcagggtttcagatacca	9	12	5	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20586121	T	T	20586121	3	4	98	1	0	0	0	0	1	0	0	0	11165	826	29	4	558	4	OR4K17	14	20586121	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08		20586121	86763419	62	97874											
OR10G3	26533	broad.mit.edu	37	chr14	22038086	22038086	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccagggggctgttggtttCaggcctcaggtagatgaagg	16	7	2	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22038086	G	G	22038086	3	3	98	1	0	0	0	0	1	0	0	0	10994	835	29	4	154	4	OR10G3	14	22038086	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	1451965	22038086	85311454	63	97875											
PSMC6	5706	broad.mit.edu	37	chr14	53180740	53180740	+	Intron	DEL	A	-	-													gataaatgaattaaggaattAaaaaaaaaaagacaattttt							TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53180740	-	-	53180740	6	5	98	0	1	1	0	1	0	0	0	0	12797	377	13	0		0	PSMC6	14	53180740	Intron	DEL	A	TCGA-38-4627-01A-01D-1553-08	31142654	53180740	54168800	64	97876											
ATP6V1D	51382	broad.mit.edu	37	chr14	67826329	67826329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgaagggaccgcgctccGggttcctaaacctgtgaaag	13	11	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67826329	T	T	67826329	1	4	98	0	1	0	0	0	0	0	0	0	1186	1131	39	1		1	ATP6V1D	14	67826329	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	14645589	67826329	39523211	65	97877											
SERPINA6	866	broad.mit.edu	37	chr14	94780977	94780977	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagacaggtgtacaggagGagtggcattgtccagtatag	15	5	0	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94780977	A	A	94780977	2	1	98	1	0	0	0	0	0	0	0	1	14206	1161	41	4		4	SERPINA6	14	94780977	Silent	SNP	G	TCGA-38-4627-01A-01D-1553-08	26954648	94780977	12568563	66	97878											
ADAL	161823	broad.mit.edu	37	chr15	43637890	43637890	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaattcatgtctcagtccGtatgacaaagtaaaatgtca	8	7	3	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43637890	A	A	43637890	1	1	98	0	1	0	0	0	0	0	0	0	233	1160	40	4		4	ADAL	15	43637890	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08		43637890	58893502	67	97879											
FURIN	5045	broad.mit.edu	37	chr15	91421974	91421974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccaatcttgaatgaccCcagcccactctgtccacagg	7	16	2	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91421974	A	A	91421974	1	1	98	0	1	0	0	0	0	0	0	0	6159	638	22	2		2	FURIN	15	91421974	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	47784084	91421974	11109418	68	97880											
MKL2	57496	broad.mit.edu	37	chr16	14340356	14340356	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactgaagacagaactgaaGttaaggggtctgccagtgtc	13	7	1	4			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14340356	A	A	14340356	2	1	98	1	0	0	0	0	0	0	0	1	9695	1020	36	4		4	MKL2	16	14340356	Silent	SNP	G	TCGA-38-4627-01A-01D-1553-08		14340356	76014397	69	97881											
CHD9	80205	broad.mit.edu	37	chr16	53326814	53326814	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaccacacgtttgaggcGtctcatcactgcataccagc	7	13	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53326814	A	A	53326814	3	1	98	1	0	0	0	0	1	0	0	0	3363	1145	40	4	5470	4	CHD9	16	53326814	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	38986458	53326814	37027939	70	97882											
CES7	221223	broad.mit.edu	37	chr16	55883473	55883473	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccgaagtcctccaggcgcTtgcatcgtggtggggtaagc	14	13	0	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55883473	A	A	55883473	1	1	98	0	1	0	0	0	0	0	0	0	3302	1624	56	5		5	CES7	16	55883473	Intron	SNP	T	TCGA-38-4627-01A-01D-1553-08	2556659	55883473	34471280	71	97883											
ITGAE	3682	broad.mit.edu	37	chr17	3638115	3638115	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaccgtcacagtcacctttTgcatcctcttcaactgcagg	6	16	4	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3638115	A	A	3638115	3	1	98	1	0	0	0	0	1	0	0	0	7955	1812	63	5	932	5	ITGAE	17	3638115	Missense_Mutation	SNP	T	TCGA-38-4627-01A-01D-1553-08		3638115	77557095	72	97884											
AIPL1	23746	broad.mit.edu	37	chr17	6331846	6331846	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgtggggataaacggatgGatggcatccaggctacctgc	15	9	0	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6331846	A	A	6331846	1	1	98	0	1	0	0	0	0	0	0	0	436	1189	41	4		4	AIPL1	17	6331846	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	2693731	6331846	74863364	73	97885											
POLR2A	5430	broad.mit.edu	37	chr17	7416688	7416688	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcccagctactcaccgaCatctcccagctactcgccaa	5	19	3	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7416688	T	T	7416688	3	4	98	1	0	0	0	0	1	0	0	0	12309	478	17	4	5219	4	POLR2A	17	7416688	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	1084842	7416688	73778522	74	97886											
MYH3	4621	broad.mit.edu	37	chr17	10542739	10542739	+	Frame_Shift_Del	DEL	A	-	-													gggccttcttctctctggttAactttgcaattgtttcatct							TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10542739	-	-	10542739	7	5	98	1	0	1	0	1	0	0	0	0	10130	372	13	0	2916	0	MYH3	17	10542739	Frame_Shift_Del	DEL	A	TCGA-38-4627-01A-01D-1553-08	3126051	10542739	70652471	75	97887											
MYOCD	93649	broad.mit.edu	37	chr17	12649171	12649171	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatcactttgggatccgaTctaaatgcaagttatcccac	7	11	2	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12649171	C	C	12649171	1	2	98	0	1	0	0	0	0	0	0	0	10181	1450	50	5		5	MYOCD	17	12649171	Intron	SNP	T	TCGA-38-4627-01A-01D-1553-08	2106432	12649171	68546039	76	97888											
TAOK1	57551	broad.mit.edu	37	chr17	27829672	27829672	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatccacaatctccaccCcaagtatctcgtcacaaatc	3	16	4	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27829672	A	A	27829672	2	1	98	1	0	0	0	0	0	0	0	1	15666	610	22	2		2	TAOK1	17	27829672	Silent	SNP	C	TCGA-38-4627-01A-01D-1553-08	15180501	27829672	53365538	77	97889											
KRT25	147183	broad.mit.edu	37	chr17	38905656	38905656	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatatggttttctttagctCtttggtagtttcaactgtgt	8	7	3	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38905656	T	T	38905656	1	4	98	0	1	0	0	0	0	0	0	0	8533	928	32	4		4	KRT25	17	38905656	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	11075984	38905656	42289554	78	97890											
KRT13	3860	broad.mit.edu	37	chr17	39661141	39661141	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttggggagttgtggcatGagaaagcccatcagaggtag	15	6	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39661141	T	T	39661141	1	4	98	0	1	0	0	0	0	0	0	0	8521	1305	45	3		3	KRT13	17	39661141	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	755485	39661141	41534069	79	97891											
STAT3	6774	broad.mit.edu	37	chr17	40489767	40489767	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatgggggaagtggtccgAcctatgcccttactctccgc	11	14	1	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40489767	C	C	40489767	1	2	98	0	1	0	0	0	0	0	0	0	15384	290	10	5		5	STAT3	17	40489767	Intron	SNP	A	TCGA-38-4627-01A-01D-1553-08	828626	40489767	40705443	80	97892											
HDAC5	10014	broad.mit.edu	37	chr17	42155733	42155733	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagcccagagggatggGggccggggcgtcacagggca	21	9	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42155733	A	A	42155733	1	1	98	0	1	0	0	0	0	0	0	0	7077	1247	43	4		4	HDAC5	17	42155733	3'UTR	SNP	G	TCGA-38-4627-01A-01D-1553-08	1665966	42155733	39039477	81	97893											
C17orf46	124783	broad.mit.edu	37	chr17	43332972	43333000	+	Frame_Shift_Del	DEL	GGAGCGGGGATCTGATGGGCTGGCCTGCG	-	-													gttggtggggatggcctcccGgagcggggatctgatgggct					rs148603964	byFrequency;by1000genomes	TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43333000	-	-	43332972	7	5	98	1	0	1	0	1	0	0	0	0	1873	1115	39	0	585	0	C17orf46	17	43332972	Frame_Shift_Del	DEL	GGAGCGGGGATCTGATGGGCTGGCCTGCG	TCGA-38-4627-01A-01D-1553-08	1177239	43332972	37862238	82	97894											
KIAA1267	284058	broad.mit.edu	37	chr17	44145082	44145082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatgtacccaagcgcaccCctgcctgaaaagcaccacca	6	17	0	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44145082	A	A	44145082	1	1	98	0	1	0	0	0	0	0	0	0	8289	638	22	2		2	KIAA1267	17	44145082	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	812110	44145082	37050128	83	97895											
SEPT4	5414	broad.mit.edu	37	chr17	56606477	56606477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagagcagcaccttaccCcagcttcagtcctgtcctca	6	18	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56606477	A	A	56606477	3	1	98	1	0	0	0	0	1	0	0	0	14179	637	22	2	1510	2	SEPT4	17	56606477	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	12461395	56606477	24588733	84	97896											
BCAS3	54828	broad.mit.edu	37	chr17	59024579	59024579	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgttttttgtcttccaGgaatgcttctagtcacaaca	6	10	3	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59024579	T	T	59024579	5	4	98	1	0	0	0	0	0	0	1	0	1357	1014	35	2	1137	2	BCAS3	17	59024579	Splice_Site	SNP	G	TCGA-38-4627-01A-01D-1553-08	2418102	59024579	22170631	85	97897											
MC5R	4161	broad.mit.edu	37	chr18	13826014	13826014	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctggcagtggcggacatgCtggtgagcatgtccagtgcc	16	11	0	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13826014	T	T	13826014	2	4	98	1	0	0	0	0	0	0	0	1	9460	796	28	4		4	MC5R	18	13826014	Silent	SNP	C	TCGA-38-4627-01A-01D-1553-08		13826014	64251234	86	97898											
ZNF561	93134	broad.mit.edu	37	chr19	9730017	9730017	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctaaaagaaccagctgcAtgcctgctcaggctcagctc	8	15	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9730017	T	T	9730017	1	4	98	0	1	0	0	0	0	0	0	0	18119	232	8	5		5	ZNF561	19	9730017	Intron	SNP	A	TCGA-38-4627-01A-01D-1553-08		9730017	49398966	87	97899											
SPC24	147841	broad.mit.edu	37	chr19	11258800	11258800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggtgagctgagtagggCaggtcgttaaggaccccggc	16	10	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11258800	A	A	11258800	1	1	98	0	1	0	0	0	0	0	0	0	15137	725	25	3		3	SPC24	19	11258800	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	1528783	11258800	47870183	88	97900											
ALKBH6	84964	broad.mit.edu	37	chr19	36501809	36501809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttaccatgatgccctccCcaggcagatactggttcacg	10	13	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36501809	A	A	36501809	3	1	98	1	0	0	0	0	1	0	0	0	531	623	22	2	405	2	ALKBH6	19	36501809	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	25243009	36501809	22627174	89	97901											
BLVRB	645	broad.mit.edu	37	chr19	40953974	40953974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaagtaaagacaagagGggctggataaagcagacacc	12	7	0	4			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40953974	T	T	40953974	1	4	98	0	1	0	0	0	0	0	0	0	1458	1247	43	2		2	BLVRB	19	40953974	Intron	SNP	G	TCGA-38-4627-01A-01D-1553-08	4452165	40953974	18175009	90	97902											
GIPR	2696	broad.mit.edu	37	chr19	46177478	46177478	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcggcagagatgtgagctCggcctcagtttgtccagtaa	14	9	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46177478	T	T	46177478	1	4	98	0	1	0	0	0	0	0	0	0	6459	899	31	4		4	GIPR	19	46177478	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	5223504	46177478	12951505	91	97903											
U2AF2	11338	broad.mit.edu	37	chr19	56173908	56173908	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacgcccagatgcgcctggGggggctgacccaggcccctg	15	16	0	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56173908	A	A	56173908	3	1	98	1	0	0	0	0	1	0	0	0	16949	1232	43	4	549	4	U2AF2	19	56173908	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	9996430	56173908	2955075	92	97904											
NINL	22981	broad.mit.edu	37	chr20	25485627	25485627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctcttcccacacgcccCggatctggctctctggggtg	11	17	3	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25485627	A	A	25485627	3	1	98	1	0	0	0	0	1	0	0	0	10515	652	23	1	3619	1	NINL	20	25485627	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08		25485627	37539893	93	97905											
NCOA6	23054	broad.mit.edu	37	chr20	33320357	33320357	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgtctgcagaaatgatcaTcttacctttgtccagagact	7	10	3	3			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33320357	C	C	33320357	1	2	98	0	1	0	0	0	0	0	0	0	10328	1450	50	5		5	NCOA6	20	33320357	Intron	SNP	T	TCGA-38-4627-01A-01D-1553-08	7834730	33320357	29705163	94	97906											
BPI	671	broad.mit.edu	37	chr20	36954764	36954764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccggccttaccttctaccCtgccgtggatgtccaggcct	9	17	1	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36954764	A	A	36954764	3	1	98	1	0	0	0	0	1	0	0	0	1499	681	24	2	1141	2	BPI	20	36954764	Missense_Mutation	SNP	C	TCGA-38-4627-01A-01D-1553-08	3634407	36954764	26070756	95	97907											
TPTE	7179	broad.mit.edu	37	chr21	11013030	11013031	+	Intron	DEL	AA	-	-													taattcttttcagaaaaggtAaagtgtatttacatacttat							TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11013031	-	-	11013030	6	5	98	0	1	1	0	1	0	0	0	0	16554	377	13	0		0	TPTE	21	11013030	Intron	DEL	AA	TCGA-38-4627-01A-01D-1553-08		11013030	37116865	96	97908											
DOPEY2	9980	broad.mit.edu	37	chr21	37541593	37541593	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgttcttgatcggtttgCtgtcctcagtaaggtagccc	10	10	2	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37541593	T	T	37541593	1	4	98	0	1	0	0	0	0	0	0	0	4748	812	28	4		4	DOPEY2	21	37541593	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	26528563	37541593	10588302	97	97909											
HIRA	7290	broad.mit.edu	37	chr22	19398295	19398295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatatcaactgaaaaaatcGgcttgcctggaaacaaagaa	8	7	1	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19398295	A	A	19398295	3	1	98	1	0	0	0	0	1	0	0	0	7187	1116	39	4	3105	4	HIRA	22	19398295	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08		19398295	31906271	98	97910											
BPIL2	254240	broad.mit.edu	37	chr22	32833811	32833811	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattagggagtaatccagcAgagtgtagttgtcaatcttg	12	5	2	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32833811	T	T	32833811	3	4	98	1	0	0	0	0	1	0	0	0	1501	188	7	5	876	5	BPIL2	22	32833811	Missense_Mutation	SNP	A	TCGA-38-4627-01A-01D-1553-08	13435516	32833811	18470755	99	97911											
MXRA5	25878	broad.mit.edu	37	chrX	3235707	3235707	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggaaagggtccggttttcGtgcagggtgatgcggccctc	16	9	0	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3235707	A	A	3235707	2	1	98	1	0	0	0	0	0	0	0	1	10097	1136	40	4		4	MXRA5	23	3235707	Silent	SNP	G	TCGA-38-4627-01A-01D-1553-08		3235707	152034853	100	97912											
DMD	1756	broad.mit.edu	37	chrX	31496381	31496381	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagggtctcatctatttttcTctgccagtcagcggagtgca	10	10	4	0			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31496381	A	A	31496381	4	1	98	1	0	0	0	0	0	1	0	0	4620	1559	54	5	2476	5	DMD	23	31496381	Nonsense_Mutation	SNP	T	TCGA-38-4627-01A-01D-1553-08	28260674	31496381	123774179	101	97913											
MECP2	4204	broad.mit.edu	37	chrX	153357589	153357589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttaaaaaaaaaaaaaaCagatggccaaaccaggacat	5	6	0	1			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153357589	A	A	153357589	1	1	98	0	1	0	0	0	0	0	0	0	9516	493	17	3		3	MECP2	23	153357589	Intron	SNP	C	TCGA-38-4627-01A-01D-1553-08	121861208	153357589	1912971	102	97914											
G6PD	2539	broad.mit.edu	37	chrX	153764207	153764207	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgtgaggcgggaacggGcatagcccacgatgaaggtg	16	10	0	2			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153764207	A	A	153764207	3	1	98	1	0	0	0	0	1	0	0	0	6206	1203	42	4	1375	4	G6PD	23	153764207	Missense_Mutation	SNP	G	TCGA-38-4627-01A-01D-1553-08	406618	153764207	1506353	103	97915											
GABRD	2563	broad.mit.edu	37	chr1	1961436	1961436	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagatggacgtgaggaaCgccattgtcctcttctccct	11	12	2	2	rs75511732		TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1961436	T	T	1961436	2	4	99	1	0	0	0	0	0	0	0	1	6229	535	19	4		4	GABRD	1	1961436	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08		1961436	247289185	1	97916											
PDIK1L	149420	broad.mit.edu	37	chr1	26448204	26448204	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgaaagcactgattaaaTaaaatatttatagagtttcc	5	4	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26448204	C	C	26448204	1	2	99	0	1	0	0	0	0	0	0	0	11767	1421	49	5		5	PDIK1L	1	26448204	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	24486768	26448204	222802417	2	97917											
CCDC28B	79140	broad.mit.edu	37	chr1	32667694	32667694	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccaagcagcgggccaagtTcaagaggtgggtacagaagg	15	10	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32667694	C	C	32667694	3	2	99	1	0	0	0	0	1	0	0	0	2830	1783	62	5	160	5	CCDC28B	1	32667694	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	6219490	32667694	216582927	3	97918											
RSPO1	284654	broad.mit.edu	37	chr1	38082223	38082223	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggacggcaagcagacGcccacctggcggatgtcgtt	16	12	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38082223	A	A	38082223	2	1	99	1	0	0	0	0	0	0	0	1	13820	1074	38	4		4	RSPO1	1	38082223	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	5414529	38082223	211168398	4	97919											
GLIS1	148979	broad.mit.edu	37	chr1	53990590	53990590	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggggcacgggtggggtgaGtgaggcccatccctacggga	21	9	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53990590	C	C	53990590	1	2	99	0	1	0	0	0	0	0	0	0	6509	1044	36	4		4	GLIS1	1	53990590	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	15908367	53990590	195260031	5	97920											
LRRC40	55631	broad.mit.edu	37	chr1	70625094	70625095	+	Missense_Mutation	DNP	GC	AT	AT													gtgtcatggcagtctcagtaGcagactcactttggctaggt							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	70625095	AT	AT	70625094	3	1	99	1	0	0	0	0	1	0	0	0	9085	971	34	4	693	4	LRRC40	1	70625094	Missense_Mutation	DNP	GC	TCGA-38-4628-01A-01D-1265-08	16634504	70625094	178625527	6	97921											
DNTTIP2	30836	broad.mit.edu	37	chr1	94342445	94342445	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttcagattagagtgcactGatacagcatttttattttgg	9	5	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94342445	A	A	94342445	3	1	99	1	0	0	0	0	1	0	0	0	4722	1294	45	4	1248	4	DNTTIP2	1	94342445	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	23717351	94342445	154908176	7	97922											
SLC22A15	55356	broad.mit.edu	37	chr1	116580053	116580053	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggttttgaacagtactttcAttacaatgaatcataatata	6	5	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116580053	C	C	116580053	1	2	99	0	1	0	0	0	0	0	0	0	14559	232	8	5		5	SLC22A15	1	116580053	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	22237608	116580053	132670568	8	97923											
PHGDH	26227	broad.mit.edu	37	chr1	120286302	120286309	+	Intron	DEL	GTCATGGT	-	-													gtcaagagctacagctgatgGtcatggtgttcccagagagt							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120286309	-	-	120286302	6	5	99	0	1	1	0	1	0	0	0	0	11936	1276	44	0		0	PHGDH	1	120286302	Intron	DEL	GTCATGGT	TCGA-38-4628-01A-01D-1265-08	3706249	120286302	128964319	9	97924											
ACP6	51205	broad.mit.edu	37	chr1	147127387	147127387	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaagggaggaagcacaGgcaggcagaggcttcagctt	16	7	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147127387	A	A	147127387	1	1	99	0	1	0	0	0	0	0	0	0	165	1015	35	4		4	ACP6	1	147127387	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	26841085	147127387	102123234	10	97925											
TARS2	80222	broad.mit.edu	37	chr1	150460018	150460018	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggcacccccaaagctccGatccgcatcagacttagccc	8	17	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150460018	T	T	150460018	1	4	99	0	1	0	0	0	0	0	0	0	15679	1073	37	3		3	TARS2	1	150460018	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	3332631	150460018	98790603	11	97926											
FAM63A	55793	broad.mit.edu	37	chr1	150980967	150980967	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcggaggccgattcgcCgtgtggcgggttcgagtccc	19	11	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150980967	T	T	150980967	1	4	99	0	1	0	0	0	0	0	0	0	5647	667	23	4		4	FAM63A	1	150980967	5'Flank	SNP	C	TCGA-38-4628-01A-01D-1265-08	520949	150980967	98269654	12	97927											
CGN	57530	broad.mit.edu	37	chr1	151498138	151498138	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccatgcagtgctggaggcCgagaggcagaagatgtcagc	16	9	1	3	rs74665256	byFrequency;by1000genomes	TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151498138	T	T	151498138	2	4	99	1	0	0	0	0	0	0	0	1	3333	639	23	4		4	CGN	1	151498138	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	517171	151498138	97752483	13	97928											
TCHHL1	126637	broad.mit.edu	37	chr1	152060291	152060291	+	Intron	DEL	A	-	-													aagcaataatcccagtgacgAaaacctctttttctctaagt							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152060291	-	-	152060291	6	5	99	0	1	1	0	1	0	0	0	0	15823	261	9	0		0	TCHHL1	1	152060291	Intron	DEL	A	TCGA-38-4628-01A-01D-1265-08	562153	152060291	97190330	14	97929											
FLG2	388698	broad.mit.edu	37	chr1	152323784	152323784	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggactgtccatgaccagActggccatgtctagtggtat	12	9	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152323784	T	T	152323784	3	4	99	1	0	0	0	0	1	0	0	0	5980	275	10	5	701	5	FLG2	1	152323784	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	263493	152323784	96926837	15	97930											
LCE3C	353144	broad.mit.edu	37	chr1	152573217	152573217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcaaagatgtcctgcCagcaaaaccagcagcagtgc	9	13	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152573217	A	A	152573217	3	1	99	1	0	0	0	0	1	0	0	0	8743	595	21	2	12	2	LCE3C	1	152573217	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	249433	152573217	96677404	16	97931											
CRTC2	200186	broad.mit.edu	37	chr1	153927404	153927404	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgaggatctcgctgcaccCgttccaccagcccatggtgc	10	16	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153927404	T	T	153927404	3	4	99	1	0	0	0	0	1	0	0	0	3932	652	23	4	1812	4	CRTC2	1	153927404	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	1354187	153927404	95323217	17	97932											
FCRL3	115352	broad.mit.edu	37	chr1	157666998	157666998	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactgtctccacctcacacCagtaagaccctgagtcttca	5	16	5	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157666998	T	T	157666998	4	4	99	1	0	0	0	0	0	1	0	0	5853	595	21	4	1468	4	FCRL3	1	157666998	Nonsense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	3739594	157666998	91583623	18	97933											
ADAMTS4	9507	broad.mit.edu	37	chr1	161162113	161162113	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacgagacccatgtcccatCagggaagcaatgttgtcgga	11	10	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161162113	A	A	161162113	1	1	99	0	1	0	0	0	0	0	0	0	268	841	29	3		3	ADAMTS4	1	161162113	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	3495115	161162113	88088508	19	97934											
FMO4	2329	broad.mit.edu	37	chr1	171293296	171293296	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccactgtgtgcagcataaCgaagcgtccagacttctccg	10	13	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171293296	T	T	171293296	3	4	99	1	0	0	0	0	1	0	0	0	6015	536	19	4	351	4	FMO4	1	171293296	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	10131183	171293296	77957325	20	97935											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185270204	185270204	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attagctcatcttgttgcatCtcaaagcttaaactcttact	4	10	4	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185270204	A	A	185270204	3	1	99	1	0	0	0	0	1	0	0	0	8000	912	32	3	932	3	IVNS1ABP	1	185270204	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	13976908	185270204	63980417	21	97936											
HMCN1	83872	broad.mit.edu	37	chr1	185958557	185958557	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttccagacattgtcactCttttataatcttgaaacaaa	3	10	4	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185958557	A	A	185958557	1	1	99	0	1	0	0	0	0	0	0	0	7287	928	32	3		3	HMCN1	1	185958557	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	688353	185958557	63292064	22	97937											
RGS2	5997	broad.mit.edu	37	chr1	192778178	192778178	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcccagccgcaaacagcCggggctccagcgggagaacg	14	16	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192778178	A	A	192778178	1	1	99	0	1	0	0	0	0	0	0	0	13411	667	23	1		1	RGS2	1	192778178	5'UTR	SNP	C	TCGA-38-4628-01A-01D-1265-08	6819621	192778178	56472443	23	97938											
CFHR5	81494	broad.mit.edu	37	chr1	196977743	196977743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaaattcccacataaagCgatgatatcatcaccaccat	5	11	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196977743	A	A	196977743	3	1	99	1	0	0	0	0	1	0	0	0	3318	768	27	3	1678	3	CFHR5	1	196977743	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	4199565	196977743	52272878	24	97939											
LAD1	3898	broad.mit.edu	37	chr1	201351492	201351492	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggagaccagagactaagAccaggctccaaagggctcgg	15	10	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201351492	T	T	201351492	1	4	99	0	1	0	0	0	0	0	0	0	8671	290	10	5		5	LAD1	1	201351492	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	4373749	201351492	47899129	25	97940											
KDM5B	10765	broad.mit.edu	37	chr1	202731752	202731752	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatttaagtttaaacttggGggtaaaggggattaaagaaa	11	1	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202731752	A	A	202731752	1	1	99	0	1	0	0	0	0	0	0	0	8204	1247	43	4		4	KDM5B	1	202731752	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	1380260	202731752	46518869	26	97941											
FMOD	2331	broad.mit.edu	37	chr1	203316507	203316507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttgtaggagaggtctaGctcaaggaggctgctggaat	16	6	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203316507	T	T	203316507	3	4	99	1	0	0	0	0	1	0	0	0	6017	962	34	3	246	3	FMOD	1	203316507	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	584755	203316507	45934114	27	97942											
CDK18	5129	broad.mit.edu	37	chr1	205496074	205496074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctgaggtggctcagaCcttcccacgtaggaaagagg	15	10	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205496074	A	A	205496074	1	1	99	0	1	0	0	0	0	0	0	0	3164	522	18	3		3	CDK18	1	205496074	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	2179567	205496074	43754547	28	97943											
KCNK2	3776	broad.mit.edu	37	chr1	215259842	215259842	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattaatgttatgaaatggAagacggtctccacgatattc	8	8	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215259842	T	T	215259842	4	4	99	1	0	0	0	0	0	1	0	0	8136	247	9	5	227	5	KCNK2	1	215259842	Nonsense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	9763768	215259842	33990779	29	97944											
USH2A	7399	broad.mit.edu	37	chr1	216138893	216138893	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgctttgagcatatttctTcaaagaatctctttttgctg	6	8	3	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216138893	G	G	216138893	1	3	99	0	1	0	0	0	0	0	0	0	17162	1798	62	5		5	USH2A	1	216138893	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	879051	216138893	33111728	30	97945											
PARP1	142	broad.mit.edu	37	chr1	226549294	226549294	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catacaacagagggtatgtaCatgtgcctcatctcccccag	8	13	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226549294	T	T	226549294	1	4	99	0	1	0	0	0	0	0	0	0	11548	493	17	4		4	PARP1	1	226549294	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	10410401	226549294	22701327	31	97946											
CDC42BPA	8476	broad.mit.edu	37	chr1	227213906	227213906	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacttttaactattaaaccCcaaatattttgaaaggtcta	3	7	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227213906	T	T	227213906	1	4	99	0	1	0	0	0	0	0	0	0	3102	638	22	4		4	CDC42BPA	1	227213906	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	664612	227213906	22036715	32	97947											
ACTN2	88	broad.mit.edu	37	chr1	236900395	236900395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattcccgtcgacagagccGtcctgtttacctattgtgtt	9	12	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236900395	A	A	236900395	1	1	99	0	1	0	0	0	0	0	0	0	205	1160	40	4		4	ACTN2	1	236900395	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	9686489	236900395	12350226	33	97948											
SDCCAG8	10806	broad.mit.edu	37	chr1	243430923	243430923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagaaaaaaaaaaaaaaaGtcccggtcaactgtgggcac	8	8	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243430923	A	A	243430923	1	1	99	0	1	0	0	0	0	0	0	0	14072	1044	36	4		4	SDCCAG8	1	243430923	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	6530528	243430923	5819698	34	97949											
CMPK2	129607	broad.mit.edu	37	chr2	6990127	6990127	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggacaggcaaaacacaaaGagttggtctactttttcaca	10	8	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6990127	A	A	6990127	1	1	99	0	1	0	0	0	0	0	0	0	3613	957	33	4		4	CMPK2	2	6990127	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08		6990127	236209246	35	97950											
BRE	9577	broad.mit.edu	37	chr2	28531273	28531273	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcaggttcccccaaccaCtgagtcagccatgaagaaga	8	13	3	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28531273	G	G	28531273	1	3	99	0	1	0	0	0	0	0	0	0	1518	580	20	4		4	BRE	2	28531273	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	21541146	28531273	214668100	36	97951											
LRPPRC	10128	broad.mit.edu	37	chr2	44145100	44145100	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaattggttgggcttacacCccacactgctattagaaaga	8	10	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44145100	G	G	44145100	1	3	99	0	1	0	0	0	0	0	0	0	9052	638	22	4		4	LRPPRC	2	44145100	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	15613827	44145100	199054273	37	97952											
CLEC4F	165530	broad.mit.edu	37	chr2	71036905	71036905	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcgttgaatggtgtcccatCtgtccagcgccaggagccct	13	13	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71036905	G	G	71036905	3	3	99	1	0	0	0	0	1	0	0	0	3548	913	32	4	153	4	CLEC4F	2	71036905	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	26891805	71036905	172162468	38	97953											
IL1R2	7850	broad.mit.edu	37	chr2	102632562	102632563	+	Intron	DEL	AC	-	-													aaaatgtgttttctttttttActagccataaaagaaagact							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102632563	-	-	102632562	6	5	99	0	1	1	0	1	0	0	0	0	7729	406	14	0		0	IL1R2	2	102632562	Intron	DEL	AC	TCGA-38-4628-01A-01D-1265-08	31595657	102632562	140566811	39	97954											
LRP1B	53353	broad.mit.edu	37	chr2	141459870	141459870	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caatttattttcctaaatatCgattaagaagtaacgttaca	4	6	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141459870	A	A	141459870	1	1	99	0	1	0	0	0	0	0	0	0	9042	899	31	3		3	LRP1B	2	141459870	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	38827308	141459870	101739503	40	97955											
SCN2A	6326	broad.mit.edu	37	chr2	166221826	166221826	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcctcttttctacccattTtttcctatttatttaaatgt	1	9	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166221826	G	G	166221826	1	3	99	0	1	0	0	0	0	0	0	0	14029	1856	64	5		5	SCN2A	2	166221826	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	24761956	166221826	76977547	41	97956											
OSBPL6	114880	broad.mit.edu	37	chr2	179226637	179226637	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggcagggaggtggctaGtcatggggatagtacagttt	18	5	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179226637	A	A	179226637	1	1	99	0	1	0	0	0	0	0	0	0	11375	1044	36	4		4	OSBPL6	2	179226637	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	13004811	179226637	63972736	42	97957											
TTN	7273	broad.mit.edu	37	chr2	179617816	179617816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctattaatcctttagaaTttctacttaaatctcacatc	1	10	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179617816	C	C	179617816	1	2	99	0	1	0	0	0	0	0	0	0	16861	1508	52	5		5	TTN	2	179617816	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	391179	179617816	63581557	43	97958											
TTN	7273	broad.mit.edu	37	chr2	179639636	179639636	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaacaatgaaatccttcGttgttgaataccttcaacaa	6	8	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179639636	A	A	179639636	1	1	99	0	1	0	0	0	0	0	0	0	16861	1160	40	4		4	TTN	2	179639636	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	21820	179639636	63559737	44	97959											
ZNF385B	151126	broad.mit.edu	37	chr2	180307910	180307910	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacacaaactgcttaaatTgctgaatccttgtggctttc	7	10	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180307910	C	C	180307910	1	2	99	0	1	0	0	0	0	0	0	0	18003	1827	63	5		5	ZNF385B	2	180307910	3'UTR	SNP	T	TCGA-38-4628-01A-01D-1265-08	668274	180307910	62891463	45	97960											
ERBB4	2066	broad.mit.edu	37	chr2	212615501	212615501	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgactaggagtaactcctCaaaggaaatactcctgctcc	7	12	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212615501	T	T	212615501	1	4	99	0	1	0	0	0	0	0	0	0	5251	841	29	4		4	ERBB4	2	212615501	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	32307591	212615501	30583872	46	97961											
SMARCAL1	50485	broad.mit.edu	37	chr2	217285083	217285083	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaatgggcctatggcagCagcgagtcaccctccaccag	12	14	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217285083	G	G	217285083	3	3	99	1	0	0	0	0	1	0	0	0	14887	709	25	4	934	4	SMARCAL1	2	217285083	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	4669582	217285083	25914290	47	97962											
NGEF	25791	broad.mit.edu	37	chr2	233757737	233757737	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacgatgttctcctccatcCggtgctccagctccaggagg	11	14	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233757737	T	T	233757737	3	4	99	1	0	0	0	0	1	0	0	0	10489	652	23	4	1155	4	NGEF	2	233757737	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	16472654	233757737	9441636	48	97963											
MTMR14	64419	broad.mit.edu	37	chr3	9730589	9730589	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgggggaccagtagtgggaGaaggtaacacgctgactgat	17	6	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9730589	A	A	9730589	1	1	99	0	1	0	0	0	0	0	0	0	10036	957	33	4		4	MTMR14	3	9730589	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08		9730589	188291841	49	97964											
C3orf20	84077	broad.mit.edu	37	chr3	14801515	14801515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgattctggtgagccagCagggacttgctatccactgc	13	10	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14801515	A	A	14801515	1	1	99	0	1	0	0	0	0	0	0	0	2235	725	25	3		3	C3orf20	3	14801515	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	5070926	14801515	183220915	50	97965											
FBXW12	285231	broad.mit.edu	37	chr3	48421080	48421080	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctgtgtatttcaatttcagGataggaatgtcaagttagga	10	4	4	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48421080	C	C	48421080	1	2	99	0	1	0	0	0	0	0	0	0	5822	1189	41	4		4	FBXW12	3	48421080	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	33619565	48421080	149601350	51	97966											
SHISA5	51246	broad.mit.edu	37	chr3	48510922	48510922	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcggcacacttggaggctGaggataaggggcatgcacca	17	9	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48510922	A	A	48510922	4	1	99	1	0	0	0	0	0	1	0	0	14396	1299	45	4	249	4	SHISA5	3	48510922	Nonsense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	89842	48510922	149511508	52	97967											
NISCH	11188	broad.mit.edu	37	chr3	52492774	52492774	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggagaagagggagaaggatCtggaggtctacctccagaag	16	6	2	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52492774	A	A	52492774	3	1	99	1	0	0	0	0	1	0	0	0	10527	912	32	3	284	3	NISCH	3	52492774	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	3981852	52492774	145529656	53	97968											
ITIH4	3700	broad.mit.edu	37	chr3	52851979	52851979	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggggcctgtgtggggCcagcctgcacgcgctgtgtg	20	10	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52851979	T	T	52851979	1	4	99	0	1	0	0	0	0	0	0	0	7976	754	26	4		4	ITIH4	3	52851979	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	359205	52851979	145170451	54	97969											
EPHA6	285220	broad.mit.edu	37	chr3	96706597	96706597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggggcgtgcattgccctgGtttcagtccgtgttttctac	12	10	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96706597	A	A	96706597	3	1	99	1	0	0	0	0	1	0	0	0	5213	1261	44	4	884	4	EPHA6	3	96706597	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	43854618	96706597	101315833	55	97970											
CD200	4345	broad.mit.edu	37	chr3	112068659	112068659	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaaacgtcaccggaatcaGgaccgaggtgagttgtcaca	13	9	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112068659	C	C	112068659	3	2	99	1	0	0	0	0	1	0	0	0	3010	991	35	4	892	4	CD200	3	112068659	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	15362062	112068659	85953771	56	97971											
PARP14	54625	broad.mit.edu	37	chr3	122446793	122446793	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccggctccgtgccacacgtCaatcgaaatggctttaaccg	10	14	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122446793	T	T	122446793	2	4	99	1	0	0	0	0	0	0	0	1	11552	813	29	4		4	PARP14	3	122446793	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	10378134	122446793	75575637	57	97972											
ESYT3	83850	broad.mit.edu	37	chr3	138194934	138194934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatcgtgagtagttatgaGccagtcctgctctaggtgct	11	9	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138194934	T	T	138194934	1	4	99	0	1	0	0	0	0	0	0	0	5308	986	34	3		3	ESYT3	3	138194934	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	15748141	138194934	59827496	58	97973											
CP	1356	broad.mit.edu	37	chr3	148903209	148903209	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgtgtaatgatcagttGtaaggcattcaacattaaaa	8	7	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148903209	A	A	148903209	3	1	99	1	0	0	0	0	1	0	0	0	3819	1377	48	4	1127	4	CP	3	148903209	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	10708275	148903209	49119221	59	97974											
IGSF10	285313	broad.mit.edu	37	chr3	151155695	151155695	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttggtgtcatccccactGggatttcgggctacacatac	9	11	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151155695	A	A	151155695	2	1	99	1	0	0	0	0	0	0	0	1	7667	1335	47	4		4	IGSF10	3	151155695	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	2252486	151155695	46866735	60	97975											
YEATS2	55689	broad.mit.edu	37	chr3	183476724	183476724	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgttcctaaaattcatGgaagtagttttgtaacatct	6	9	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183476724	A	A	183476724	3	1	99	1	0	0	0	0	1	0	0	0	17599	1349	47	4	1673	4	YEATS2	3	183476724	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	32321029	183476724	14545706	61	97976											
MYL5	4636	broad.mit.edu	37	chr4	672623	672623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaagaccccatgtgggCtggctccagggccagcagga	16	12	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	672623	A	A	672623	1	1	99	0	1	0	0	0	0	0	0	0	10144	812	28	3		3	MYL5	4	672623	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		672623	190481653	62	97977											
HGFAC	3083	broad.mit.edu	37	chr4	3446354	3446354	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcggccctgcccccagcttgTctgagcagcccttgcctgaa	10	17	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3446354	A	A	3446354	4	1	99	1	0	0	0	0	0	1	0	0	7153	1673	58	5	761	5	HGFAC	4	3446354	Nonsense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	2773731	3446354	187707922	63	97978											
SH3TC1	54436	broad.mit.edu	37	chr4	8220097	8220097	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtgtttccatgggcctctCttttttggggaaatgtgtgt	12	6	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8220097	G	G	8220097	1	3	99	0	1	0	0	0	0	0	0	0	14374	928	32	4		4	SH3TC1	4	8220097	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	4773743	8220097	182934179	64	97979											
LDB2	9079	broad.mit.edu	37	chr4	16760880	16760880	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaccagaggttgtcacTatcctgcaaagagacagatc	9	12	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16760880	G	G	16760880	3	3	99	1	0	0	0	0	1	0	0	0	8768	1522	53	5	1122	5	LDB2	4	16760880	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	8540783	16760880	174393396	65	97980											
TLR6	10333	broad.mit.edu	37	chr4	38829252	38829252	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccactggcacaccatcctgaGataccagggcagatccaagt	9	14	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38829252	C	C	38829252	3	2	99	1	0	0	0	0	1	0	0	0	16078	942	33	4	551	4	TLR6	4	38829252	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	22068372	38829252	152325024	66	97981											
SLAIN2	57606	broad.mit.edu	37	chr4	48385897	48385897	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaaccgttttttatgctGaaaaaccgttttaaaccata	5	7	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48385897	T	T	48385897	1	4	99	0	1	0	0	0	0	0	0	0	14479	1305	45	3		3	SLAIN2	4	48385897	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	9556645	48385897	142768379	67	97982											
FRYL	285527	broad.mit.edu	37	chr4	48622484	48622484	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttaactggtaccttctcttGatttacagtttatgtgtgaa	7	6	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48622484	A	A	48622484	1	1	99	0	1	0	0	0	0	0	0	0	6124	1305	45	4		4	FRYL	4	48622484	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	236587	48622484	142531792	68	97983											
POLR2B	5431	broad.mit.edu	37	chr4	57889908	57889908	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtacttgtggtattcagtaTagacaagaggtaggtatctt	12	4	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57889908	C	C	57889908	2	2	99	1	0	0	0	0	0	0	0	1	12310	1413	49	5		5	POLR2B	4	57889908	Silent	SNP	T	TCGA-38-4628-01A-01D-1265-08	9267424	57889908	133264368	69	97984											
WDFY3	23001	broad.mit.edu	37	chr4	85609063	85609063	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggtgctgaccttagtgcaGacacctgatgggtatagtgc	13	9	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85609063	A	A	85609063	1	1	99	0	1	0	0	0	0	0	0	0	17397	957	33	4		4	WDFY3	4	85609063	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	27719155	85609063	105545213	70	97985											
COL25A1	84570	broad.mit.edu	37	chr4	109895627	109895627	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagatcaaaatgtaacAcagtataggtcacgccaata	6	7	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109895627	G	G	109895627	1	3	99	0	1	0	0	0	0	0	0	0	3716	174	6	5		5	COL25A1	4	109895627	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	24286564	109895627	81258649	71	97986											
WDR17	116966	broad.mit.edu	37	chr4	177071546	177071546	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagatatgcctgcattataaTatttttgaagatgcaaaata	6	4	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177071546	A	A	177071546	1	1	99	0	1	0	0	0	0	0	0	0	17404	1421	49	5		5	WDR17	4	177071546	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	67175919	177071546	14082730	72	97987											
SLC12A7	10723	broad.mit.edu	37	chr5	1064120	1064120	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagggcatggctgtggggCctcagaggagcccgtcccgg	20	11	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1064120	T	T	1064120	1	4	99	0	1	0	0	0	0	0	0	0	14501	754	26	4		4	SLC12A7	5	1064120	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		1064120	179851140	73	97988											
DNAH5	1767	broad.mit.edu	37	chr5	13776694	13776694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggttctgtcggacccgaCtcatgaagtagtcgtgcagg	14	9	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13776694	A	A	13776694	3	1	99	1	0	0	0	0	1	0	0	0	4644	565	20	3	4747	3	DNAH5	5	13776694	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	12712574	13776694	167138566	74	97989											
FBXL7	23194	broad.mit.edu	37	chr5	15928521	15928521	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccccgaactgaggcgacTggaagtctcaggctgttaca	12	12	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15928521	G	G	15928521	3	3	99	1	0	0	0	0	1	0	0	0	5781	1580	55	5	660	5	FBXL7	5	15928521	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	2151827	15928521	164986739	75	97990											
MTMR12	54545	broad.mit.edu	37	chr5	32270864	32270864	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcaacgtaagcaaaaactAgagctagtggggaaaacctg	11	7	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32270864	T	T	32270864	1	4	99	0	1	0	0	0	0	0	0	0	10035	435	15	5		5	MTMR12	5	32270864	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	16342343	32270864	148644396	76	97991											
WDR41	55255	broad.mit.edu	37	chr5	76747211	76747211	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaacaaagttcaaattaTttttctcacagattatatca	2	6	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76747211	C	C	76747211	1	2	99	0	1	0	0	0	0	0	0	0	17421	1508	52	5		5	WDR41	5	76747211	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	44476347	76747211	104168049	77	97992											
FAM172A	83989	broad.mit.edu	37	chr5	93160134	93160134	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactacattgaaaattcaaaTtagagaatatgagaggactt	7	4	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93160134	C	C	93160134	1	2	99	0	1	0	0	0	0	0	0	0	5537	1508	52	5		5	FAM172A	5	93160134	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	16412923	93160134	87755126	78	97993											
MEGF10	84466	broad.mit.edu	37	chr5	126676236	126676236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatagagtcagctatcggaCagcctatcgacatggggaga	12	9	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126676236	A	A	126676236	3	1	99	1	0	0	0	0	1	0	0	0	9553	478	17	3	243	3	MEGF10	5	126676236	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	33516102	126676236	54239024	79	97994											
FBN2	2201	broad.mit.edu	37	chr5	127866421	127866421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggaaaatgaatgaataaCtatataataaaccatagttt	5	3	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127866421	A	A	127866421	1	1	99	0	1	0	0	0	0	0	0	0	5760	580	20	3		3	FBN2	5	127866421	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	1190185	127866421	53048839	80	97995											
GFRA3	2676	broad.mit.edu	37	chr5	137593536	137593536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgaggcagacgtggcGctggcagtggggcccggagc	19	12	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137593536	T	T	137593536	3	4	99	1	0	0	0	0	1	0	0	0	6413	1087	38	3	645	3	GFRA3	5	137593536	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	9727115	137593536	43321724	81	97996											
PCDHA7	56141	broad.mit.edu	37	chr5	140214302	140214302	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctggaggtgatcgtggaaAggccgctgcaggttttccat	14	9	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140214302	T	T	140214302	3	4	99	1	0	0	0	0	1	0	0	0	11623	63	3	5	336	5	PCDHA7	5	140214302	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	2620766	140214302	40700958	82	97997											
DIAPH1	1729	broad.mit.edu	37	chr5	140960302	140960302	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagaaaaattattccaGtcacatacatgtcctctggc	8	9	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140960302	A	A	140960302	1	1	99	0	1	0	0	0	0	0	0	0	4558	1044	36	4		4	DIAPH1	5	140960302	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	746000	140960302	39954958	83	97998											
FBXO38	81545	broad.mit.edu	37	chr5	147782066	147782066	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagccaaaattcaaactttAcatttagttggtgagtacat	8	6	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147782066	G	G	147782066	2	3	99	1	0	0	0	0	0	0	0	1	5803	388	14	5		5	FBXO38	5	147782066	Silent	SNP	A	TCGA-38-4628-01A-01D-1265-08	6821764	147782066	33133194	84	97999											
HTR4	3360	broad.mit.edu	37	chr5	147830970	147830970	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagtgggagtggggatGgggtgatacttcatagagat	19	2	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147830970	A	A	147830970	1	1	99	0	1	0	0	0	0	0	0	0	7519	1363	47	4		4	HTR4	5	147830970	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	48904	147830970	33084290	85	98000											
RANBP17	64901	broad.mit.edu	37	chr5	170319516	170319516	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggttcagaaagaccaatttGtcttcagagaaattattgct	8	6	3	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170319516	A	A	170319516	3	1	99	1	0	0	0	0	1	0	0	0	13135	1377	48	4	396	4	RANBP17	5	170319516	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	22488546	170319516	10595744	86	98001											
RUFY1	80230	broad.mit.edu	37	chr5	179025938	179025938	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggccaggcggctccaggGtgtggggaggctgttaggga	23	7	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179025938	C	C	179025938	1	2	99	0	1	0	0	0	0	0	0	0	13849	1276	44	4		4	RUFY1	5	179025938	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	8706422	179025938	1889322	87	98002											
KDM1B	221656	broad.mit.edu	37	chr6	18200618	18200618	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatttttataatactgtgtCtgatataactcttgtgtcct	5	7	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18200618	T	T	18200618	1	4	99	0	1	0	0	0	0	0	0	0	8193	928	32	4		4	KDM1B	6	18200618	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		18200618	152914449	88	98003											
SCGN	10590	broad.mit.edu	37	chr6	25665258	25665258	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagcagcgtggagtttatgCaggtgagtgcttggttgtgt	16	5	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25665258	G	G	25665258	3	3	99	1	0	0	0	0	1	0	0	0	14016	711	25	4	348	4	SCGN	6	25665258	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	7464640	25665258	145449809	89	98004											
HIST1H4B	8366	broad.mit.edu	37	chr6	26027259	26027267	+	In_Frame_Del	DEL	CGTGTAGGT	-	-													gtcttgcgcttggcgtgctcCgtgtaggtcacggcgtcccg					rs139832518	byFrequency	TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26027267	-	-	26027259	7	5	99	1	0	1	0	1	0	0	0	0	7233	639	23	0	93	0	HIST1H4B	6	26027259	In_Frame_Del	DEL	CGTGTAGGT	TCGA-38-4628-01A-01D-1265-08	362001	26027259	145087808	90	98005											
BAT3	7917	broad.mit.edu	37	chr6	31612875	31612875	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggtagaagacggagccacgGatgaggcctgcccaggacca	15	11	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31612875	C	C	31612875	3	2	99	1	0	0	0	0	1	0	0	0	1327	1174	41	4	2227	4	BAT3	6	31612875	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	5585616	31612875	139502192	91	98006											
C6orf1	221491	broad.mit.edu	37	chr6	34214749	34214749	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaggctctggtttcagtgTggacgagtatggctgggaac	15	8	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34214749	G	G	34214749	1	3	99	0	1	0	0	0	0	0	0	0	2339	1711	59	5		5	C6orf1	6	34214749	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	2601874	34214749	136900318	92	98007											
CUL7	9820	broad.mit.edu	37	chr6	43018253	43018253	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggccaggttttagaaaaAcctccacataacaaaacagc	6	12	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43018253	G	G	43018253	1	3	99	0	1	0	0	0	0	0	0	0	4093	58	2	5		5	CUL7	6	43018253	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	8803504	43018253	128096814	93	98008											
SFRS18	25957	broad.mit.edu	37	chr6	99848691	99848691	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttctttcactttctcGtttcctttttaatctatcat	2	9	5	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99848691	A	A	99848691	4	1	99	1	0	0	0	0	0	1	0	0	14287	1153	40	4	278	4	SFRS18	6	99848691	Nonsense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	56830438	99848691	71266376	94	98009											
LAMA2	3908	broad.mit.edu	37	chr6	129794508	129794508	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacttgaggtaatttagtTtatatgtaaagctaaggatt	9	2	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129794508	G	G	129794508	1	3	99	0	1	0	0	0	0	0	0	0	8678	1856	64	5		5	LAMA2	6	129794508	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	29945817	129794508	41320559	95	98010											
C6orf192	116843	broad.mit.edu	37	chr6	133095457	133095457	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatttccttagaggctggTaaaggagaaagagagtcaaa	12	6	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133095457	A	A	133095457	1	1	99	0	1	0	0	0	0	0	0	0	2372	1653	57	5		5	C6orf192	6	133095457	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	3300949	133095457	38019610	96	98011											
TAGAP	117289	broad.mit.edu	37	chr6	159464670	159464670	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacatgatgccaacaggggAtgttccttgatatcacccta	8	11	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159464670	T	T	159464670	3	4	99	1	0	0	0	0	1	0	0	0	15656	330	12	5	2142	5	TAGAP	6	159464670	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	26369213	159464670	11650397	97	98012											
MRPL18	29074	broad.mit.edu	37	chr6	160218467	160218467	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcttgtgagagtataggaCgagtgctggcacagagatgc	16	6	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160218467	T	T	160218467	4	4	99	1	0	0	0	0	0	1	0	0	9877	528	19	4	398	4	MRPL18	6	160218467	Nonsense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	753797	160218467	10896600	98	98013											
MLLT4	4301	broad.mit.edu	37	chr6	168353016	168353016	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattgtatgtgttactcttgGctgatgtcgtagagaaatga	11	4	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168353016	A	A	168353016	1	1	99	0	1	0	0	0	0	0	0	0	9722	1218	42	4		4	MLLT4	6	168353016	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	8134549	168353016	2762051	99	98014											
SUN1	23353	broad.mit.edu	37	chr7	901102	901102	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctctggaatctggtgGtgagtaaatagacgttctga	12	6	3	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	901102	A	A	901102	5	1	99	1	0	0	0	0	0	0	1	0	15509	1275	44	4	2106	4	SUN1	7	901102	Splice_Site	SNP	G	TCGA-38-4628-01A-01D-1265-08		901102	158237561	100	98015											
DNAH11	8701	broad.mit.edu	37	chr7	21784217	21784217	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgcttataaatattttgaAgtaagcgtatgaatgtcaga	8	4	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21784217	T	T	21784217	3	4	99	1	0	0	0	0	1	0	0	0	4639	86	3	5	8536	5	DNAH11	7	21784217	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	20883115	21784217	137354446	101	98016											
VPS41	27072	broad.mit.edu	37	chr7	38791781	38791781	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtctgtgccttaccttttCaagtgggcaatgggtactgt	12	8	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38791781	T	T	38791781	3	4	99	1	0	0	0	0	1	0	0	0	17337	835	29	4	675	4	VPS41	7	38791781	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	17007564	38791781	120346882	102	98017											
GLI3	2737	broad.mit.edu	37	chr7	42006187	42006187	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagagaggtcgcttctgccCgggagaagcgtcatgggccc	15	13	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42006187	T	T	42006187	2	4	99	1	0	0	0	0	0	0	0	1	6503	639	23	4		4	GLI3	7	42006187	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	3214406	42006187	117132476	103	98018											
PKD1L1	168507	broad.mit.edu	37	chr7	47917203	47917203	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgtcaagtacagctgagCtttacccagtaagccatgct	9	11	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47917203	G	G	47917203	3	3	99	1	0	0	0	0	1	0	0	0	12059	797	28	4	5146	4	PKD1L1	7	47917203	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	5911016	47917203	111221460	104	98019											
EGFR	1956	broad.mit.edu	37	chr7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-													aaaattcccgtcgctatcaaGgaattaagagaagcaacatc					rs121913421		TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242479	-	-	55242465	7	5	99	1	0	1	0	1	0	0	0	0	5007	991	35	0	2573	0	EGFR	7	55242465	In_Frame_Del	DEL	GGAATTAAGAGAAGC	TCGA-38-4628-01A-01D-1265-08	7325262	55242465	103896198	105	98020											
SRCRB4D	136853	broad.mit.edu	37	chr7	76026893	76026893	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgcacaccccagcccagGctctggcaggctgccaggcg	13	16	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76026893	A	A	76026893	2	1	99	1	0	0	0	0	0	0	0	1	15255	1194	42	4		4	SRCRB4D	7	76026893	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	20784428	76026893	83111770	106	98021											
SEMA3D	223117	broad.mit.edu	37	chr7	84702345	84702345	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagttccacacacatatAtgtgagttttgttatagggc	8	9	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84702345	C	C	84702345	3	2	99	1	0	0	0	0	1	0	0	0	14140	449	16	5	1961	5	SEMA3D	7	84702345	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	8675452	84702345	74436318	107	98022											
ZNF804B	219578	broad.mit.edu	37	chr7	88966114	88966114	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccctgcatttagtagctgCtacccccttccacccatctc	4	19	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88966114	T	T	88966114	3	4	99	1	0	0	0	0	1	0	0	0	18300	797	28	4	3832	4	ZNF804B	7	88966114	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	4263769	88966114	70172549	108	98023											
PTCD1	26024	broad.mit.edu	37	chr7	99027449	99027449	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggagatggaagaagcTcagtggtggcccgggatcag	17	7	3	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99027449	C	C	99027449	1	2	99	0	1	0	0	0	0	0	0	0	12833	1566	54	5		5	PTCD1	7	99027449	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	10061335	99027449	60111214	109	98024											
LAMB1	3912	broad.mit.edu	37	chr7	107615484	107615484	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcttgcagtagcagtgacCtgtctcggaatcacaaggat	11	10	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107615484	T	T	107615484	3	4	99	1	0	0	0	0	1	0	0	0	8682	681	24	4	4023	4	LAMB1	7	107615484	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	8588035	107615484	51523179	110	98025											
FOXP2	93986	broad.mit.edu	37	chr7	114292161	114292161	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctgttttcccagtgcacaGaaacatctgacttcagtgta	7	10	3	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114292161	T	T	114292161	1	4	99	0	1	0	0	0	0	0	0	0	6087	957	33	3		3	FOXP2	7	114292161	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	6676677	114292161	44846502	111	98026											
RNF148	378925	broad.mit.edu	37	chr7	122342609	122342609	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacaccctttccagaggagAatgattcccgaacactccac	7	14	0	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122342609	T	T	122342609	3	4	99	1	0	0	0	0	1	0	0	0	13560	246	9	5	725	5	RNF148	7	122342609	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	8050448	122342609	36796054	112	98027											
UBN2	254048	broad.mit.edu	37	chr7	138957090	138957090	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcgtttaagagaacctcTgcaaaaactgaaactggctg	9	8	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138957090	C	C	138957090	3	2	99	1	0	0	0	0	1	0	0	0	17019	1580	55	5	1653	5	UBN2	7	138957090	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	16614481	138957090	20181573	113	98028											
SSPO	23145	broad.mit.edu	37	chr7	149485539	149485539	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagggctgcttctgcccCgaggggactctgctgcacgg	17	12	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149485539	A	A	149485539	2	1	99	1	0	0	0	0	0	0	0	1	15307	639	23	1		1	SSPO	7	149485539	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	10528449	149485539	9653124	114	98029											
RHEB	6009	broad.mit.edu	37	chr7	151168339	151168339	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagatttctattccactttTgcttctgctgcacacgacca	6	12	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151168339	G	G	151168339	1	3	99	0	1	0	0	0	0	0	0	0	13437	1827	63	5		5	RHEB	7	151168339	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	1682800	151168339	7970324	115	98030											
MLL3	58508	broad.mit.edu	37	chr7	151927085	151927085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccttctgctccttggcCaaaactgccacaaactacac	4	16	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151927085	A	A	151927085	3	1	99	1	0	0	0	0	1	0	0	0	9715	594	21	2	12004	2	MLL3	7	151927085	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	758746	151927085	7211578	116	98031											
EBF2	64641	broad.mit.edu	37	chr8	25897473	25897473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaagttagtcccgggaaCgcggcgcgccaaggcggggc	17	12	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25897473	A	A	25897473	1	1	99	0	1	0	0	0	0	0	0	0	4921	551	19	3		3	EBF2	8	25897473	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		25897473	120466549	117	98032											
ANK1	286	broad.mit.edu	37	chr8	41566187	41566187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggctgttccaaggattaCacacacacacccctaactca	6	15	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41566187	A	A	41566187	1	1	99	0	1	0	0	0	0	0	0	0	620	493	17	3		3	ANK1	8	41566187	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	15668714	41566187	104797835	118	98033											
CLVS1	157807	broad.mit.edu	37	chr8	62212353	62212353	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctggtagtaaaacactgttGaatgggccacagtttcagca	10	9	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62212353	A	A	62212353	1	1	99	0	1	0	0	0	0	0	0	0	3603	1305	45	4		4	CLVS1	8	62212353	5'UTR	SNP	G	TCGA-38-4628-01A-01D-1265-08	20646166	62212353	84151669	119	98034											
CLVS1	157807	broad.mit.edu	37	chr8	62289222	62289222	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattggaagtcctaatcgaaGatccggagcttcagataaat	9	8	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62289222	T	T	62289222	3	4	99	1	0	0	0	0	1	0	0	0	3603	942	33	3	520	3	CLVS1	8	62289222	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	76869	62289222	84074800	120	98035											
C8orf45	157777	broad.mit.edu	37	chr8	67796088	67796088	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttgccaatatctttgcatCacaaattacccctcctggga	5	13	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67796088	T	T	67796088	3	4	99	1	0	0	0	0	1	0	0	0	2456	838	29	4	962	4	C8orf45	8	67796088	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	5506866	67796088	78567934	121	98036											
CNGB3	54714	broad.mit.edu	37	chr8	87670100	87670100	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagtgtgatgtactttccTgcgggaggacagggttcaga	14	7	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87670100	G	G	87670100	1	3	99	0	1	0	0	0	0	0	0	0	3633	1595	55	5		5	CNGB3	8	87670100	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	19874012	87670100	58693922	122	98037											
RIMS2	9699	broad.mit.edu	37	chr8	105263321	105263321	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaaaacaaaagtggcaaGaaaaacgctggaaccccttt	8	8	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105263321	T	T	105263321	3	4	99	1	0	0	0	0	1	0	0	0	13479	942	33	3	4047	3	RIMS2	8	105263321	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	17593221	105263321	41100701	123	98038											
HAUS6	54801	broad.mit.edu	37	chr9	19078076	19078076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccagctatgatcgtgcCactctactccagcctgggca	9	16	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19078076	T	T	19078076	1	4	99	0	1	0	0	0	0	0	0	0	7036	609	21	4		4	HAUS6	9	19078076	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		19078076	122135355	124	98039											
ACO1	48	broad.mit.edu	37	chr9	32424665	32424666	+	Splice_Site	INS	-	AG	AG													agctgccttggagccaaggtINSaggggcctgcgggaagaggt							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	32424666	AG	AG	32424665	8	5	99	1	0	1	1	0	0	0	1	0	146	1652	57	0	1224	0	ACO1	9	32424665	Splice_Site	INS	-	TCGA-38-4628-01A-01D-1265-08	13346589	32424665	108788766	125	98040											
PRUNE2	158471	broad.mit.edu	37	chr9	79324375	79324375	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtaagataagaaggaatCttcccaaggaactaggacat	9	6	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79324375	A	A	79324375	3	1	99	1	0	0	0	0	1	0	0	0	12747	913	32	3	6499	3	PRUNE2	9	79324375	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	46899710	79324375	61889056	126	98041											
C9orf89	84270	broad.mit.edu	37	chr9	95875265	95875265	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcttttgcctccccttttGtcttctagaccccaagggcc	8	15	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95875265	A	A	95875265	1	1	99	0	1	0	0	0	0	0	0	0	2529	1392	48	4		4	C9orf89	9	95875265	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	16550890	95875265	45338166	127	98042											
DBC1	1620	broad.mit.edu	37	chr9	122000956	122000956	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgcagtttgctctccGtgctttgcagaaggacggaa	14	8	1	1	rs1473785		TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122000956	A	A	122000956	3	1	99	1	0	0	0	0	1	0	0	0	4280	1145	40	4	1639	4	DBC1	9	122000956	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	26125691	122000956	19212475	128	98043											
FCN1	2219	broad.mit.edu	37	chr9	137806617	137806617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttacctttgggccccactgGtcctgcctttccaggggctc	11	15	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137806617	T	T	137806617	3	4	99	1	0	0	0	0	1	0	0	0	5848	1261	44	3	752	3	FCN1	9	137806617	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	15805661	137806617	3406814	129	98044											
AGPAT2	10555	broad.mit.edu	37	chr9	139571073	139571073	+	Frame_Shift_Del	DEL	A	-	-													aggtagaaggcgcccttcttAaaaggcagcaggtccccatt							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139571073	-	-	139571073	7	5	99	1	0	1	0	1	0	0	0	0	387	359	13	0	296	0	AGPAT2	9	139571073	Frame_Shift_Del	DEL	A	TCGA-38-4628-01A-01D-1265-08	1764456	139571073	1642358	130	98045											
ANAPC2	29882	broad.mit.edu	37	chr9	140074622	140074622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccatggggtggcctggCatggaggtaccttgagctgc	17	10	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140074622	A	A	140074622	1	1	99	0	1	0	0	0	0	0	0	0	603	725	25	3		3	ANAPC2	9	140074622	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	503549	140074622	1138809	131	98046											
SFMBT2	57713	broad.mit.edu	37	chr10	7262456	7262456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggattcctggggttcacaGcttcaagtttcatgttcttt	9	9	4	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7262456	T	T	7262456	3	4	99	1	0	0	0	0	1	0	0	0	14271	971	34	3	1481	3	SFMBT2	10	7262456	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08		7262456	128272291	132	98047											
GPR158	57512	broad.mit.edu	37	chr10	25887829	25887829	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagcttttgatttccaagActccagttctcccagagagg	9	10	1	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25887829	G	G	25887829	3	3	99	1	0	0	0	0	1	0	0	0	6728	275	10	5	3316	5	GPR158	10	25887829	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	18625373	25887829	109646918	133	98048											
C10orf58	84293	broad.mit.edu	37	chr10	82180281	82180281	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtggtccattggtgcaGgagccctgggggctgctgcc	18	10	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82180281	A	A	82180281	3	1	99	1	0	0	0	0	1	0	0	0	1621	1001	35	4	60	4	C10orf58	10	82180281	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	56292452	82180281	53354466	134	98049											
OBFC1	79991	broad.mit.edu	37	chr10	105657388	105657388	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccagctcctgctggtaaAagctctgcactctgttctcc	7	14	3	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105657388	C	C	105657388	3	2	99	1	0	0	0	0	1	0	0	0	10902	14	1	5	451	5	OBFC1	10	105657388	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	23477107	105657388	29877359	135	98050											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118354423	118354423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggaagcagtgcctgctGgtctctgtttggtagagatg	17	6	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118354423	T	T	118354423	1	4	99	0	1	0	0	0	0	0	0	0	12245	1363	47	2		2	PNLIPRP1	10	118354423	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	12697035	118354423	17180324	136	98051											
KNDC1	85442	broad.mit.edu	37	chr10	135010458	135010458	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaacaaacaggaaaccCtcctggcagccctgagcttt	10	12	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135010458	G	G	135010458	1	3	99	0	1	0	0	0	0	0	0	0	8497	696	24	4		4	KNDC1	10	135010458	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	16656035	135010458	524289	137	98052											
OR52M1	119772	broad.mit.edu	37	chr11	4566720	4566720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggcctggacgcctgcttGggccaaatgttccttatcca	10	12	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4566720	T	T	4566720	3	4	99	1	0	0	0	0	1	0	0	0	11220	1339	47	2	302	2	OR52M1	11	4566720	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08		4566720	130439796	138	98053											
HBD	3045	broad.mit.edu	37	chr11	5255513	5255513	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacccaagagtcttctctgtCtacacatgcccagtttccat	5	14	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5255513	G	G	5255513	1	3	99	0	1	0	0	0	0	0	0	0	7045	928	32	4		4	HBD	11	5255513	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	688793	5255513	129751003	139	98054											
NLRP14	338323	broad.mit.edu	37	chr11	7079029	7079029	+	Frame_Shift_Del	DEL	C	-	-													tgttggatgatggagtgcagCttttgtgtgaggccttaaga							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7079029	-	-	7079029	7	5	99	1	0	1	0	1	0	0	0	0	10571	797	28	0	2435	0	NLRP14	11	7079029	Frame_Shift_Del	DEL	C	TCGA-38-4628-01A-01D-1265-08	1823516	7079029	127927487	140	98055											
TUB	7275	broad.mit.edu	37	chr11	8119397	8119397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagcattcccccaggaagcAggcgggagtgggagggaggg	19	9	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8119397	T	T	8119397	1	4	99	0	1	0	0	0	0	0	0	0	16868	203	7	5		5	TUB	11	8119397	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	1040368	8119397	126887119	141	98056											
SBF2	81846	broad.mit.edu	37	chr11	9817536	9817536	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcaaagaaaagagtaagAatcaaacagaacaaaaagtg	9	4	1	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9817536	C	C	9817536	1	2	99	0	1	0	0	0	0	0	0	0	13971	261	9	5		5	SBF2	11	9817536	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	1698139	9817536	125188980	142	98057											
ANO5	203859	broad.mit.edu	37	chr11	22281108	22281108	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagctgtaattgtgtaccGcctgtcagtctttgctacat	10	9	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22281108	A	A	22281108	3	1	99	1	0	0	0	0	1	0	0	0	700	1087	38	4	1509	4	ANO5	11	22281108	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	12463572	22281108	112725408	143	98058											
TRAF6	7189	broad.mit.edu	37	chr11	36520069	36520069	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcagttccatcttgtgcaAacaaccttcatttggacatt	5	11	3	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36520069	G	G	36520069	2	3	99	1	0	0	0	0	0	0	0	1	16569	11	1	5		5	TRAF6	11	36520069	Silent	SNP	A	TCGA-38-4628-01A-01D-1265-08	14238961	36520069	98486447	144	98059											
ALKBH3	221120	broad.mit.edu	37	chr11	43941376	43941376	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggggatgagatggaaataTttctgcattctcatgaataa	11	4	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43941376	G	G	43941376	1	3	99	0	1	0	0	0	0	0	0	0	528	1508	52	5		5	ALKBH3	11	43941376	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	7421307	43941376	91065140	145	98060											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45926281	45926281	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtagattgccaccaccCgccggctcaccgtgcacttt	8	17	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45926281	T	T	45926281	3	4	99	1	0	0	0	0	1	0	0	0	9376	652	23	4	1823	4	MAPK8IP1	11	45926281	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	1984905	45926281	89080235	146	98061											
OR4A47	403253	broad.mit.edu	37	chr11	48510483	48510483	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgctcattgtagtgaccGtaactgtcagtgagaccctg	10	11	2	2	rs142333570	byFrequency	TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48510483	A	A	48510483	3	1	99	1	0	0	0	0	1	0	0	0	11136	1145	40	4	141	4	OR4A47	11	48510483	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	2584202	48510483	86496033	147	98062											
GLYATL1	92292	broad.mit.edu	37	chr11	58723260	58723260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtctcatgggtaaccatGgacccttcttgtgaagtagg	12	10	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58723260	T	T	58723260	3	4	99	1	0	0	0	0	1	0	0	0	6544	1348	47	2	788	2	GLYATL1	11	58723260	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	10212777	58723260	76283256	148	98063											
FAM111B	374393	broad.mit.edu	37	chr11	58892054	58892054	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttaaaattacatttggtCaaagaaagagtagcaaagaa	7	3	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58892054	G	G	58892054	3	3	99	1	0	0	0	0	1	0	0	0	5446	827	29	4	490	4	FAM111B	11	58892054	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	168794	58892054	76114462	149	98064											
INCENP	3619	broad.mit.edu	37	chr11	61909120	61909120	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagccttaggaagagagtggGacggtgaggggtgcactggc	20	6	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61909120	T	T	61909120	1	4	99	0	1	0	0	0	0	0	0	0	7803	1189	41	3		3	INCENP	11	61909120	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	3017066	61909120	73097396	150	98065											
FERMT3	83706	broad.mit.edu	37	chr11	63979043	63979043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgtgtgtgcttgtcccCccagcccagcccccctcccc	7	22	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63979043	A	A	63979043	1	1	99	0	1	0	0	0	0	0	0	0	5876	638	22	2		2	FERMT3	11	63979043	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	2069923	63979043	71027473	151	98066											
NPAS4	266743	broad.mit.edu	37	chr11	66189606	66189606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggcactcctctggcggGccccacggggcttctctcag	12	16	3	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66189606	T	T	66189606	3	4	99	1	0	0	0	0	1	0	0	0	10660	1203	42	3	197	3	NPAS4	11	66189606	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	2210563	66189606	68816910	152	98067											
CCDC87	55231	broad.mit.edu	37	chr11	66359594	66359594	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagggcagaaaggcgaggggGaagccctgctggtgggggcc	21	9	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66359594	A	A	66359594	3	1	99	1	0	0	0	0	1	0	0	0	2890	1174	41	4	1660	4	CCDC87	11	66359594	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	169988	66359594	68646922	153	98068											
NUMA1	4926	broad.mit.edu	37	chr11	71719881	71719881	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcgaagctgctggtctGcatgggcaacctgagaagga	15	9	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71719881	C	C	71719881	3	2	99	1	0	0	0	0	1	0	0	0	10845	1319	46	4	1310	4	NUMA1	11	71719881	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	5360287	71719881	63286635	154	98069											
DPAGT1	1798	broad.mit.edu	37	chr11	118971518	118971518	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcccaggaagatcatgcaGcagatggcaaggagggcacc	14	10	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118971518	A	A	118971518	2	1	99	1	0	0	0	0	0	0	0	1	4750	963	34	4		4	DPAGT1	11	118971518	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	47251637	118971518	16034998	155	98070											
GRIK4	2900	broad.mit.edu	37	chr11	120823751	120823751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcatggggagggggtggGgaggaggagagggggaggag	27	2	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120823751	T	T	120823751	1	4	99	0	1	0	0	0	0	0	0	0	6842	1247	43	2		2	GRIK4	11	120823751	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	1852233	120823751	14182765	156	98071											
C11orf63	79864	broad.mit.edu	37	chr11	122805201	122805201	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagggcaaccttctgacaTggtgaatgaccatcaacctt	9	10	2	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122805201	C	C	122805201	3	2	99	1	0	0	0	0	1	0	0	0	1666	1464	51	5	1130	5	C11orf63	11	122805201	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	1981450	122805201	12201315	157	98072											
CCDC77	84318	broad.mit.edu	37	chr12	538071	538071	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatggtgagtgtggctttaCaagtcacaggctaaggccca	13	9	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	538071	T	T	538071	1	4	99	0	1	0	0	0	0	0	0	0	2879	493	17	4		4	CCDC77	12	538071	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		538071	133313824	158	98073											
PTPN6	5777	broad.mit.edu	37	chr12	7060825	7060825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagaccctgctcaagggccGaggtgtccacggtagcttcc	13	13	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7060825	T	T	7060825	3	4	99	1	0	0	0	0	1	0	0	0	12900	1058	37	3	86	3	PTPN6	12	7060825	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	6522754	7060825	126791070	159	98074											
PDE3A	5139	broad.mit.edu	37	chr12	20704890	20704890	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagcgagtcgggtgtccatCggccccacgtggctggcatc	14	14	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20704890	A	A	20704890	1	1	99	0	1	0	0	0	0	0	0	0	11731	899	31	3		3	PDE3A	12	20704890	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	13644065	20704890	113147005	160	98075											
SLCO1A2	6579	broad.mit.edu	37	chr12	21446807	21446807	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactaattttacttttattaAatataggcccagttcatagt	4	7	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21446807	C	C	21446807	1	2	99	0	1	0	0	0	0	0	0	0	14836	29	1	5		5	SLCO1A2	12	21446807	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	741917	21446807	112405088	161	98076											
PDZRN4	29951	broad.mit.edu	37	chr12	41587896	41587896	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaatagaataatcaggaagGaacatcgactgaaggaattt	9	4	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41587896	A	A	41587896	3	1	99	1	0	0	0	0	1	0	0	0	11804	1174	41	4	759	4	PDZRN4	12	41587896	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	20141089	41587896	92263999	162	98077											
MLL2	8085	broad.mit.edu	37	chr12	49441648	49441648	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactaatgaacaaccatgacCgatggccgctttaagaggtg	11	9	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49441648	T	T	49441648	1	4	99	0	1	0	0	0	0	0	0	0	9714	667	23	4		4	MLL2	12	49441648	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	7853752	49441648	84410247	163	98078											
TUBA1C	84790	broad.mit.edu	37	chr12	49666727	49666727	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcttcaaggttggcattaAttaccagcctcccactgtgg	10	11	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49666727	G	G	49666727	3	3	99	1	0	0	0	0	1	0	0	0	16871	101	4	5	1081	5	TUBA1C	12	49666727	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	225079	49666727	84185168	164	98079											
FAIM2	23017	broad.mit.edu	37	chr12	50284763	50284763	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctctcagggctgcacagctCactggtggctggcagggctg	15	13	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50284763	T	T	50284763	1	4	99	0	1	0	0	0	0	0	0	0	5422	841	29	4		4	FAIM2	12	50284763	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	618036	50284763	83567132	165	98080											
EIF4B	1975	broad.mit.edu	37	chr12	53412608	53412608	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacttggcacagtaacgatGacgatgtgtatagggcgcct	12	10	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53412608	A	A	53412608	3	1	99	1	0	0	0	0	1	0	0	0	5069	1290	45	4	188	4	EIF4B	12	53412608	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	3127845	53412608	80439287	166	98081											
NEUROD4	58158	broad.mit.edu	37	chr12	55421372	55421372	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttccttcacctatcacctCttttctcatcaccttctcac	0	18	6	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55421372	A	A	55421372	1	1	99	0	1	0	0	0	0	0	0	0	10445	928	32	3		3	NEUROD4	12	55421372	3'UTR	SNP	C	TCGA-38-4628-01A-01D-1265-08	2008764	55421372	78430523	167	98082											
MYO1A	4640	broad.mit.edu	37	chr12	57436772	57436772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctccctactctgctcatcTcagaaaccaagatatagggc	6	14	3	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57436772	C	C	57436772	1	2	99	0	1	0	0	0	0	0	0	0	10162	1566	54	5		5	MYO1A	12	57436772	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	2015400	57436772	76415123	168	98083											
MON2	23041	broad.mit.edu	37	chr12	62894781	62894783	+	Intron	DEL	TAT	-	-													tgaaaatatgtcaaaggtagTattaagatagttctaaagaa					rs113437686		TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62894783	-	-	62894781	6	5	99	0	1	1	0	1	0	0	0	0	9794	1653	57	0		0	MON2	12	62894781	Intron	DEL	TAT	TCGA-38-4628-01A-01D-1265-08	5458009	62894781	70957114	169	98084											
DPY19L2	283417	broad.mit.edu	37	chr12	63976310	63976310	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtgaaaagccagctatAaaacacaaataagacaaaat	6	6	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63976310	G	G	63976310	1	3	99	0	1	0	0	0	0	0	0	0	4781	377	13	5		5	DPY19L2	12	63976310	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	1081529	63976310	69875585	170	98085											
DPY19L2	283417	broad.mit.edu	37	chr12	64055199	64055199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcctgtcattcataatcatCcacagtccttccaaaaacga	4	13	3	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64055199	A	A	64055199	3	1	99	1	0	0	0	0	1	0	0	0	4781	856	30	3	1839	3	DPY19L2	12	64055199	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	78889	64055199	69796696	171	98086											
XPOT	11260	broad.mit.edu	37	chr12	64814469	64814469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttctcagtagcattctcCttggagaatgggttatacca	9	8	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64814469	A	A	64814469	1	1	99	0	1	0	0	0	0	0	0	0	17577	696	24	2		2	XPOT	12	64814469	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	759270	64814469	69037426	172	98087											
CCT2	10576	broad.mit.edu	37	chr12	69983506	69983506	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaagaagctttgattagaTgctgagggctgaatactgag	12	5	0	6			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69983506	A	A	69983506	1	1	99	0	1	0	0	0	0	0	0	0	2983	1479	51	5		5	CCT2	12	69983506	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	5169037	69983506	63868389	173	98088											
LRRIQ1	84125	broad.mit.edu	37	chr12	85450634	85450634	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctccttgtgagggcttgaGtaactataatgcagaaagct	11	7	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85450634	A	A	85450634	3	1	99	1	0	0	0	0	1	0	0	0	9116	1029	36	4	2089	4	LRRIQ1	12	85450634	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	15467128	85450634	48401261	174	98089											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100444820	100444834	+	Intron	DEL	ATTTATCTTCATAGA	-	-													tatgaaataaagttggtggcAtttatcttcatagaatctct							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100444834	-	-	100444820	6	5	99	0	1	1	0	1	0	0	0	0	17095	232	8	0		0	UHRF1BP1L	12	100444820	Intron	DEL	ATTTATCTTCATAGA	TCGA-38-4628-01A-01D-1265-08	14994186	100444820	33407075	175	98090											
GOLGA2B	55592	broad.mit.edu	37	chr12	100551617	100551617	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggggcctcagaggatgcaCctgttagtcacaggtgaaat	15	8	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100551617	T	T	100551617	1	4	99	0	1	0	0	0	0	0	0	0	6617	522	18	4		4	GOLGA2B	12	100551617	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	106797	100551617	33300278	176	98091											
CIT	11113	broad.mit.edu	37	chr12	120313853	120313853	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggacacacacaggtgagcAaagttggcagggtaggctgt	15	7	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120313853	G	G	120313853	1	3	99	0	1	0	0	0	0	0	0	0	3469	145	5	5		5	CIT	12	120313853	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	19762236	120313853	13538042	177	98092											
GCN1L1	10985	broad.mit.edu	37	chr12	120580382	120580383	+	Frame_Shift_Ins	INS	-	C	C													agagtgggtaggatctcacgINScaaggtgcggggggtattgg							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120580383	C	C	120580382	7	5	99	1	0	1	1	0	0	0	0	0	6361	1087	38	0	2317	0	GCN1L1	12	120580382	Frame_Shift_Ins	INS	-	TCGA-38-4628-01A-01D-1265-08	266529	120580382	13271513	178	98093											
RNF17	56163	broad.mit.edu	37	chr13	25439216	25439216	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattttgtcttacactgtgtCttaaatatgattctacatat	4	7	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25439216	G	G	25439216	1	3	99	0	1	0	0	0	0	0	0	0	13572	928	32	4		4	RNF17	13	25439216	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		25439216	89730662	179	98094											
ATP8A2	51761	broad.mit.edu	37	chr13	26343230	26343230	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtggatgtggtgaagaagCgggtgaaggccatcaccctc	15	8	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26343230	A	A	26343230	2	1	99	1	0	0	0	0	0	0	0	1	1197	759	27	3		3	ATP8A2	13	26343230	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	904014	26343230	88826648	180	98095											
ELF1	1997	broad.mit.edu	37	chr13	41507961	41507961	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagcccgccttttgtgacTgcagcatgacattttctttc	9	11	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41507961	A	A	41507961	3	1	99	1	0	0	0	0	1	0	0	0	5095	1580	55	5	403	5	ELF1	13	41507961	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	15164731	41507961	73661917	181	98096											
DIS3	22894	broad.mit.edu	37	chr13	73333994	73333994	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtccatgtttgaagtatcaGtaggaatgcttattcctggt	11	6	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73333994	C	C	73333994	3	2	99	1	0	0	0	0	1	0	0	0	4575	1029	36	4	64	4	DIS3	13	73333994	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	31826033	73333994	41835884	182	98097											
MYCBP2	23077	broad.mit.edu	37	chr13	77755944	77755944	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcgtagtaatacttctccAtcatacgcaatcgggaagat	8	9	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77755944	G	G	77755944	2	3	99	1	0	0	0	0	0	0	0	1	10112	214	8	5		5	MYCBP2	13	77755944	Silent	SNP	A	TCGA-38-4628-01A-01D-1265-08	4421950	77755944	37413934	183	98098											
TMTC4	84899	broad.mit.edu	37	chr13	101294714	101294714	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcacttctctgtgggcaaGagtgcattagacaacacctt	9	11	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101294714	C	C	101294714	1	2	99	0	1	0	0	0	0	0	0	0	16386	957	33	4		4	TMTC4	13	101294714	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	23538770	101294714	13875164	184	98099											
OR4K5	79317	broad.mit.edu	37	chr14	20389573	20389573	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatctctcctttggataaaTttcttgccatattttacact	3	11	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20389573	C	C	20389573	3	2	99	1	0	0	0	0	1	0	0	0	11167	1493	52	5	810	5	OR4K5	14	20389573	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08		20389573	86959967	185	98100											
FLJ10357	55701	broad.mit.edu	37	chr14	21543035	21543035	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcaaaggaaacagaagaaaGaagcgagctgcaggtcgagg	16	6	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21543035	C	C	21543035	3	2	99	1	0	0	0	0	1	0	0	0	5983	933	33	4	1156	4	FLJ10357	14	21543035	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	1153462	21543035	85806505	186	98101											
HNRNPC	3183	broad.mit.edu	37	chr14	21681149	21681161	+	Frame_Shift_Del	DEL	CACTCTTAGAATT	-	-													cttggaagatccccgctgtcCactcttagaattgaagccac							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21681161	-	-	21681149	7	5	99	1	0	1	0	1	0	0	0	0	7329	603	21	0	404	0	HNRNPC	14	21681149	Frame_Shift_Del	DEL	CACTCTTAGAATT	TCGA-38-4628-01A-01D-1265-08	138114	21681149	85668391	187	98102											
NUBPL	80224	broad.mit.edu	37	chr14	32030658	32030658	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcgtcatggggatttggCagcgtctgctgctttttggt	14	9	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32030658	T	T	32030658	4	4	99	1	0	0	0	0	0	1	0	0	10812	711	25	4	15	4	NUBPL	14	32030658	Nonsense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	10349509	32030658	75318882	188	98103											
RALGAPA1	253959	broad.mit.edu	37	chr14	36217939	36217939	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgtgagagtgcttgtattgGaatgagactgttcgggttct	14	6	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36217939	C	C	36217939	3	2	99	1	0	0	0	0	1	0	0	0	13121	1174	41	4	5284	4	RALGAPA1	14	36217939	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	4187281	36217939	71131601	189	98104											
MGAT2	4247	broad.mit.edu	37	chr14	50088220	50088220	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcttccctggtcccggcGgtcccccagcccgaggcgga	15	18	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50088220	T	T	50088220	2	4	99	1	0	0	0	0	0	0	0	1	9636	1103	39	1		1	MGAT2	14	50088220	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	13870281	50088220	57261320	190	98105											
PRKCH	5583	broad.mit.edu	37	chr14	61952521	61952521	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttggtttttgtttttgagAcagggtctcactccatagcc	9	8	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61952521	C	C	61952521	1	2	99	0	1	0	0	0	0	0	0	0	12619	290	10	5		5	PRKCH	14	61952521	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	11864301	61952521	45397019	191	98106											
KCNH5	27133	broad.mit.edu	37	chr14	63246581	63246581	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacgtcagtgcccggacgttCgcacatgcatgggcaagggt	14	11	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63246581	A	A	63246581	2	1	99	1	0	0	0	0	0	0	0	1	8105	871	31	3		3	KCNH5	14	63246581	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	1294060	63246581	44102959	192	98107											
ZFYVE26	23503	broad.mit.edu	37	chr14	68274475	68274475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaccgtcatcctcctcaaGcaggagctccagcagggcct	10	15	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68274475	T	T	68274475	3	4	99	1	0	0	0	0	1	0	0	0	17794	971	34	3	7245	3	ZFYVE26	14	68274475	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	5027894	68274475	39075065	193	98108											
ENTPD5	957	broad.mit.edu	37	chr14	74443822	74443822	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttctctttcctggccccAaccttgttttttttttttcc	3	12	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74443822	C	C	74443822	1	2	99	0	1	0	0	0	0	0	0	0	5184	145	5	5		5	ENTPD5	14	74443822	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	6169347	74443822	32905718	194	98109											
TDP1	55775	broad.mit.edu	37	chr14	90499508	90499508	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcagccaggagccaatggCcacctttcctgtgccatatg	11	13	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90499508	G	G	90499508	3	3	99	1	0	0	0	0	1	0	0	0	15850	739	26	4	1757	4	TDP1	14	90499508	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	16055686	90499508	16850032	195	98110											
SERPINA11	256394	broad.mit.edu	37	chr14	94914835	94914835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcagagctgaggtgttagCttgggccccaagagagagca	15	8	1	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94914835	A	A	94914835	3	1	99	1	0	0	0	0	1	0	0	0	14201	797	28	3	1007	3	SERPINA11	14	94914835	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	4415327	94914835	12434705	196	98111											
C14orf49	161176	broad.mit.edu	37	chr14	95923355	95923355	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtgtgaacccaggaggtgGagcttgcagtgagctgagat	17	6	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95923355	A	A	95923355	1	1	99	0	1	0	0	0	0	0	0	0	1789	1189	41	4		4	C14orf49	14	95923355	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	1008520	95923355	11426185	197	98112											
MGA	23269	broad.mit.edu	37	chr15	41988517	41988517	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaataaagttgacaacccaGaagctgaccatctatcttct	5	11	3	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41988517	T	T	41988517	4	4	99	1	0	0	0	0	0	1	0	0	9633	943	33	3	1315	3	MGA	15	41988517	Nonsense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08		41988517	60542875	198	98113											
C15orf48	84419	broad.mit.edu	37	chr15	45723236	45723236	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcatgactgtggcggcggGtggagcctcatctttcgctg	15	10	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45723236	A	A	45723236	3	1	99	1	0	0	0	0	1	0	0	0	1812	1261	44	4	80	4	C15orf48	15	45723236	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	3734719	45723236	56808156	199	98114											
ZNF280D	54816	broad.mit.edu	37	chr15	56981157	56981157	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taccaatgagattatttctgGacaaaccattaattactgta	5	7	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56981157	A	A	56981157	1	1	99	0	1	0	0	0	0	0	0	0	17943	1189	41	4		4	ZNF280D	15	56981157	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	11257921	56981157	45550235	200	98115											
GRINL1A	81488	broad.mit.edu	37	chr15	58001463	58001463	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagaacttgacaggcctttCcagtgggactgagaagaaac	11	8	0	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58001463	T	T	58001463	3	4	99	1	0	0	0	0	1	0	0	0	6852	855	30	4	671	4	GRINL1A	15	58001463	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	1020306	58001463	44529929	201	98116											
VPS13C	54832	broad.mit.edu	37	chr15	62164183	62164183	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaggaaatattttcaaCataccttccacaggttttgt	7	7	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62164183	T	T	62164183	1	4	99	0	1	0	0	0	0	0	0	0	17318	493	17	4		4	VPS13C	15	62164183	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	4162720	62164183	40367209	202	98117											
RPL4	6124	broad.mit.edu	37	chr15	66792408	66792408	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actcacattcctggcctggcGaagaatggtgttccggcgca	12	12	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66792408	A	A	66792408	3	1	99	1	0	0	0	0	1	0	0	0	13706	1058	37	4	267	4	RPL4	15	66792408	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	4628225	66792408	35738984	203	98118											
ARID3B	10620	broad.mit.edu	37	chr15	74883593	74883593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccgcagggagggccggcGgcccagctacagctcctccc	13	18	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74883593	A	A	74883593	3	1	99	1	0	0	0	0	1	0	0	0	919	1116	39	4	1001	4	ARID3B	15	74883593	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	8091185	74883593	27647799	204	98119											
SCAPER	49855	broad.mit.edu	37	chr15	76797376	76797376	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcattaaactataaccaaatGatatctgtagtctgaaacat	5	7	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76797376	T	T	76797376	1	4	99	0	1	0	0	0	0	0	0	0	13990	1305	45	3		3	SCAPER	15	76797376	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	1913783	76797376	25734016	205	98120											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84611522	84611522	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgccctcctggctggcaCattgaagaatggcagcaggt	13	11	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84611522	T	T	84611522	2	4	99	1	0	0	0	0	0	0	0	1	276	477	17	4		4	ADAMTSL3	15	84611522	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	7814146	84611522	17919870	206	98121											
ACAN	176	broad.mit.edu	37	chr15	89382384	89382384	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaaccagctcctccacGcacctcagccaagttactta	4	17	2	0	rs76035942	by1000genomes	TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89382384	A	A	89382384	1	1	99	0	1	0	0	0	0	0	0	0	117	1102	38	4		4	ACAN	15	89382384	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	4770862	89382384	13149008	207	98122											
IFT140	9742	broad.mit.edu	37	chr16	1616433	1616433	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggccactcatcttccaagGactagcatgctttcaatatt	6	12	3	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1616433	A	A	1616433	1	1	99	0	1	0	0	0	0	0	0	0	7626	1189	41	4		4	IFT140	16	1616433	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08		1616433	88738320	208	98123											
EME2	197342	broad.mit.edu	37	chr16	1825151	1825152	+	Nonsense_Mutation	DNP	GC	AA	AA													gtggtaccgctcactctcatGcccacagcagggctggctgg							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	1825152	AA	AA	1825151	4	1	99	1	0	0	0	0	0	1	0	0	5131	1319	46	4	601	4	EME2	16	1825151	Nonsense_Mutation	DNP	GC	TCGA-38-4628-01A-01D-1265-08	208718	1825151	88529602	209	98124											
ZC3H7A	29066	broad.mit.edu	37	chr16	11870042	11870042	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataaataaagtgacaggagGgtattgccaattacgtgttt	10	4	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11870042	C	C	11870042	1	2	99	0	1	0	0	0	0	0	0	0	17698	1247	43	4		4	ZC3H7A	16	11870042	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	10044891	11870042	78484711	210	98125											
C16orf62	57020	broad.mit.edu	37	chr16	19702685	19702685	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaacagtggactccaaCgacagcctctacgggggaga	12	11	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19702685	T	T	19702685	2	4	99	1	0	0	0	0	0	0	0	1	1839	535	19	4		4	C16orf62	16	19702685	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	7832643	19702685	70652068	211	98126											
LCMT1	51451	broad.mit.edu	37	chr16	25175965	25175965	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgtgctggtttacatgactCcagagcagtccgcaaacctc	10	12	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25175965	G	G	25175965	3	3	99	1	0	0	0	0	1	0	0	0	8750	855	30	4	642	4	LCMT1	16	25175965	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	5473280	25175965	65178788	212	98127											
PRRT2	112476	broad.mit.edu	37	chr16	29825755	29825755	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggtggggggagtcctcatCatcatcgcctcctgcgtcat	12	13	4	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29825755	A	A	29825755	2	1	99	1	0	0	0	0	0	0	0	1	12716	816	29	3		3	PRRT2	16	29825755	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	4649790	29825755	60528998	213	98128											
MAPK3	5595	broad.mit.edu	37	chr16	30133363	30133363	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggctgctgctgtggcctTacaaagggggagtccgggcc	17	10	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30133363	G	G	30133363	1	3	99	0	1	0	0	0	0	0	0	0	9371	1769	61	5		5	MAPK3	16	30133363	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	307608	30133363	60221390	214	98129											
FBXL19	54620	broad.mit.edu	37	chr16	30958143	30958143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccctgcgtctcctgctgCgtcacgcaccccagctgagc	9	20	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30958143	A	A	30958143	3	1	99	1	0	0	0	0	1	0	0	0	5772	768	27	3	1818	3	FBXL19	16	30958143	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	824780	30958143	59396610	215	98130											
ITGAD	3681	broad.mit.edu	37	chr16	31429343	31429343	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgccaccactgctgtgtatCaagcccacacatgcatgcgg	10	14	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31429343	G	G	31429343	1	3	99	0	1	0	0	0	0	0	0	0	7954	841	29	4		4	ITGAD	16	31429343	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	471200	31429343	58925410	216	98131											
SALL1	6299	broad.mit.edu	37	chr16	51174943	51174943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggaaaaccgagttagcgGaggcttgctgaggtagaagt	17	5	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51174943	T	T	51174943	3	4	99	1	0	0	0	0	1	0	0	0	13921	1174	41	3	2792	3	SALL1	16	51174943	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	19745600	51174943	39179810	217	98132											
SALL1	6299	broad.mit.edu	37	chr16	51175382	51175382	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacagcaatatttggtgacGaatctgttcgatcaattgca	8	8	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51175382	A	A	51175382	3	1	99	1	0	0	0	0	1	0	0	0	13921	1058	37	4	3231	4	SALL1	16	51175382	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	439	51175382	39179371	218	98133											
ARL2BP	23568	broad.mit.edu	37	chr16	57282531	57282531	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagaagagaataaactcatCtacacacctatttttaatga	4	8	2	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57282531	A	A	57282531	2	1	99	1	0	0	0	0	0	0	0	1	938	903	32	3		3	ARL2BP	16	57282531	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	6107149	57282531	33072222	219	98134											
CNOT1	23019	broad.mit.edu	37	chr16	58614702	58614702	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttaccaccataaatgattGtgaatgctataaaaatctga	6	7	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58614702	A	A	58614702	1	1	99	0	1	0	0	0	0	0	0	0	3649	1392	48	4		4	CNOT1	16	58614702	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	1332171	58614702	31740051	220	98135											
TK2	7084	broad.mit.edu	37	chr16	66547835	66547835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgactcagacaaaggaaCcctgcaagagcaaacctggc	10	12	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66547835	A	A	66547835	1	1	99	0	1	0	0	0	0	0	0	0	16056	522	18	3		3	TK2	16	66547835	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	7933133	66547835	23806918	221	98136											
C16orf61	56942	broad.mit.edu	37	chr16	81009986	81009986	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggcatcgagtgaaaataCaatttatttttcggattcct	7	7	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81009986	A	A	81009986	1	1	99	0	1	0	0	0	0	0	0	0	1838	493	17	3		3	C16orf61	16	81009986	3'UTR	SNP	C	TCGA-38-4628-01A-01D-1265-08	14462151	81009986	9344767	222	98137											
KIAA0182	23199	broad.mit.edu	37	chr16	85695049	85695049	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgtgagcctgcccctctGgacaagtaccagccacctcc	9	17	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85695049	T	T	85695049	2	4	99	1	0	0	0	0	0	0	0	1	8229	1335	47	2		2	KIAA0182	16	85695049	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	4685063	85695049	4659704	223	98138											
SPATA22	84690	broad.mit.edu	37	chr17	3343538	3343538	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcagaaacagacgccggtCtgacagaaacacattggaaa	10	9	2	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3343538	A	A	3343538	3	1	99	1	0	0	0	0	1	0	0	0	15124	913	32	3	100	3	SPATA22	17	3343538	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08		3343538	77851672	224	98139											
SHMT1	6470	broad.mit.edu	37	chr17	18234030	18234030	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcaggcgaattctatgCcgtgaaggaatctctgagaa	11	7	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18234030	T	T	18234030	1	4	99	0	1	0	0	0	0	0	0	0	14398	754	26	4		4	SHMT1	17	18234030	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	14890492	18234030	62961180	225	98140											
SLC13A2	9058	broad.mit.edu	37	chr17	26818601	26818601	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgccacgctgactggcaccGcacccaacctggtgctgcaa	10	17	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26818601	C	C	26818601	3	2	99	1	0	0	0	0	1	0	0	0	14505	1087	38	4	886	4	SLC13A2	17	26818601	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	8584571	26818601	54376609	226	98141											
RNF135	84282	broad.mit.edu	37	chr17	29325909	29325909	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttggggtggcttcctgggaGatgagccgcgaccaggtcct	17	10	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29325909	A	A	29325909	2	1	99	1	0	0	0	0	0	0	0	1	13551	933	33	4		4	RNF135	17	29325909	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	2507308	29325909	51869301	227	98142											
UTP6	55813	broad.mit.edu	37	chr17	30216229	30216229	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcgtaagaattgcttgaatCcaggaaaaaaaaatatgtct	9	5	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30216229	T	T	30216229	1	4	99	0	1	0	0	0	0	0	0	0	17229	870	30	4		4	UTP6	17	30216229	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	890320	30216229	50978981	228	98143											
RHOT1	55288	broad.mit.edu	37	chr17	30528162	30528162	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaagagtaagaatacactCatcttcattagtcttccatc	4	10	4	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30528162	A	A	30528162	1	1	99	0	1	0	0	0	0	0	0	0	13452	841	29	3		3	RHOT1	17	30528162	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	311933	30528162	50667048	229	98144											
SLFN11	91607	broad.mit.edu	37	chr17	33680277	33680277	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattttaccactcaattctCaagaaagacggtgacttagc	6	10	3	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33680277	T	T	33680277	1	4	99	0	1	0	0	0	0	0	0	0	14847	841	29	4		4	SLFN11	17	33680277	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	3152115	33680277	47514933	230	98145											
SLFN11	91607	broad.mit.edu	37	chr17	33690840	33690840	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccatgttgaactcacagCtgaaactattagaagaaatg	7	9	1	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33690840	A	A	33690840	1	1	99	0	1	0	0	0	0	0	0	0	14847	812	28	3		3	SLFN11	17	33690840	5'UTR	SNP	C	TCGA-38-4628-01A-01D-1265-08	10563	33690840	47504370	231	98146											
SLFN12L	342615	broad.mit.edu	37	chr17	33825955	33825955	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacgatgctgccctggagGtcttacaggagcgcattaag	13	9	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33825955	A	A	33825955	1	1	99	0	1	0	0	0	0	0	0	0	14849	1276	44	4		4	SLFN12L	17	33825955	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	135115	33825955	47369255	232	98147											
ACACA	31	broad.mit.edu	37	chr17	35616200	35616200	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcagataggaggtgcttttCtcttatcacacactggttaa	8	9	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35616200	T	T	35616200	1	4	99	0	1	0	0	0	0	0	0	0	106	928	32	4		4	ACACA	17	35616200	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	1790245	35616200	45579010	233	98148											
FBXL20	84961	broad.mit.edu	37	chr17	37457331	37457331	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccagaacattccaggcctAttttaaagaaaaagagacag	8	8	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37457331	C	C	37457331	1	2	99	0	1	0	0	0	0	0	0	0	5774	464	16	5		5	FBXL20	17	37457331	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	1841131	37457331	43737879	234	98149											
CDK12	51755	broad.mit.edu	37	chr17	37627359	37627359	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagtccaagggttcacctgTatttttgcctagaaaagaga	11	7	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37627359	C	C	37627359	3	2	99	1	0	0	0	0	1	0	0	0	3158	1638	57	5	1280	5	CDK12	17	37627359	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	170028	37627359	43567851	235	98150											
MAPT	4137	broad.mit.edu	37	chr17	44061120	44061120	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcagaaggagcaggcgcActcggaggagcatttgggaa	17	8	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44061120	C	C	44061120	3	2	99	1	0	0	0	0	1	0	0	0	9389	159	6	5	968	5	MAPT	17	44061120	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	6433761	44061120	37134090	236	98151											
TBX21	30009	broad.mit.edu	37	chr17	45822618	45822618	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgggcgaaggagactctaaGaggaggcgcgtgtcccccta	15	11	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45822618	C	C	45822618	3	2	99	1	0	0	0	0	1	0	0	0	15779	933	33	4	1516	4	TBX21	17	45822618	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	1761498	45822618	35372592	237	98152											
WFIKKN2	124857	broad.mit.edu	37	chr17	48918350	48918350	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcacaagaagacctgtgaCgtcctcaaggagtttcttgg	11	9	2	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48918350	T	T	48918350	2	4	99	1	0	0	0	0	0	0	0	1	17486	535	19	4		4	WFIKKN2	17	48918350	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	3095732	48918350	32276860	238	98153											
MRC2	9902	broad.mit.edu	37	chr17	60757553	60757553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttaccacaatttcgaccGgagccggcacgacgacgacg	10	15	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60757553	T	T	60757553	3	4	99	1	0	0	0	0	1	0	0	0	9852	1116	39	1	2379	1	MRC2	17	60757553	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	11839203	60757553	20437657	239	98154											
DNAH17	8632	broad.mit.edu	37	chr17	76547781	76547781	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggctgggcgcggtggctCaagcttgtaatctcagccct	13	12	3	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76547781	T	T	76547781	1	4	99	0	1	0	0	0	0	0	0	0	4641	841	29	4		4	DNAH17	17	76547781	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	15790228	76547781	4647429	240	98155											
C17orf101	79701	broad.mit.edu	37	chr17	80363183	80363183	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctgcgaacccccacccGcctcactcctccttaccggt	6	23	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80363183	A	A	80363183	1	1	99	0	1	0	0	0	0	0	0	0	1862	1102	38	4		4	C17orf101	17	80363183	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	3815402	80363183	832027	241	98156											
TYMS	7298	broad.mit.edu	37	chr18	670729	670729	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcctccatgccatgccctCtgccagttctatgtggtgaa	9	14	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	670729	G	G	670729	2	3	99	1	0	0	0	0	0	0	0	1	16938	900	32	4		4	TYMS	18	670729	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08		670729	77406519	242	98157											
SPIRE1	56907	broad.mit.edu	37	chr18	12546780	12546780	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcattgctaccgtcagCttccaccgtgttggccatgt	8	14	3	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12546780	G	G	12546780	3	3	99	1	0	0	0	0	1	0	0	0	15189	797	28	4	1834	4	SPIRE1	18	12546780	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	11876051	12546780	65530468	243	98158											
C18orf34	374864	broad.mit.edu	37	chr18	30913186	30913186	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatcttgaagttcctgattCtgcttagagtccagtagagg	11	7	2	5			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30913186	A	A	30913186	3	1	99	1	0	0	0	0	1	0	0	0	1920	912	32	3	1828	3	C18orf34	18	30913186	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	18366406	30913186	47164062	244	98159											
MRO	83876	broad.mit.edu	37	chr18	48327642	48327642	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggcaggaaccctagggtCtggcgtctcaactcgcaact	12	13	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48327642	T	T	48327642	1	4	99	0	1	0	0	0	0	0	0	0	9866	928	32	4		4	MRO	18	48327642	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	17414456	48327642	29749606	245	98160											
TMIGD2	126259	broad.mit.edu	37	chr19	4294444	4294444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacatgagcataggatataGgagccaggcttctcctccct	9	11	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4294444	A	A	4294444	1	1	99	0	1	0	0	0	0	0	0	0	16354	1015	35	4		4	TMIGD2	19	4294444	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08		4294444	54834539	246	98161											
DENND1C	79958	broad.mit.edu	37	chr19	6477476	6477476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcctcggtgacctgggtGggacgtggaggggcgggggt	22	8	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6477476	T	T	6477476	1	4	99	0	1	0	0	0	0	0	0	0	4468	1363	47	2		2	DENND1C	19	6477476	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	2183032	6477476	52651507	247	98162											
DNMT1	1786	broad.mit.edu	37	chr19	10252742	10252742	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggggccgcccatggagtAcacctggacgcactcgggca	15	13	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10252742	C	C	10252742	3	2	99	1	0	0	0	0	1	0	0	0	4715	391	14	5	1675	5	DNMT1	19	10252742	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	3775266	10252742	48876241	248	98163											
KIAA0892	23383	broad.mit.edu	37	chr19	19455991	19455991	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attacctgccttgcagctggCtcggtagagccattgtcata	10	11	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19455991	T	T	19455991	1	4	99	0	1	0	0	0	0	0	0	0	8266	812	28	4		4	KIAA0892	19	19455991	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	9203249	19455991	39672992	249	98164											
ZNF536	9745	broad.mit.edu	37	chr19	30935455	30935455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatcacggccgagtcggCccagggccagggccccaacg	13	17	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30935455	A	A	30935455	3	1	99	1	0	0	0	0	1	0	0	0	18101	739	26	3	988	3	ZNF536	19	30935455	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	11479464	30935455	28193528	250	98165											
RHPN2	85415	broad.mit.edu	37	chr19	33503585	33503585	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cataagatctgcaatttcatCttcatataaatagccatctt	3	9	5	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33503585	G	G	33503585	3	3	99	1	0	0	0	0	1	0	0	0	13460	913	32	4	1668	4	RHPN2	19	33503585	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	2568130	33503585	25625398	251	98166											
UBA2	10054	broad.mit.edu	37	chr19	34934961	34934961	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttgtttttttttttTttttttttttttgtctcaga	3	2	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34934961	G	G	34934961	1	3	99	0	1	0	0	0	0	0	0	0	16954	1856	64	5		5	UBA2	19	34934961	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	1431376	34934961	24194022	252	98167											
SBSN	374897	broad.mit.edu	37	chr19	36018821	36018821	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaacctgtccagcagcGttgttgaccccatggccaag	9	15	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36018821	A	A	36018821	2	1	99	1	0	0	0	0	0	0	0	1	13976	1136	40	4		4	SBSN	19	36018821	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	1083860	36018821	23110162	253	98168											
GAPDHS	26330	broad.mit.edu	37	chr19	36024444	36024444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccatgtcgaagcgcgaCatcgtcctcaccaatgtcac	10	14	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36024444	A	A	36024444	3	1	99	1	0	0	0	0	1	0	0	0	6299	477	17	3	17	3	GAPDHS	19	36024444	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	5623	36024444	23104539	254	98169											
ATP4A	495	broad.mit.edu	37	chr19	36054337	36054337	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccttcctcttgccaccCccgccacccgccttcttctt	3	22	4	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36054337	A	A	36054337	2	1	99	1	0	0	0	0	0	0	0	1	1149	610	22	2		2	ATP4A	19	36054337	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	29893	36054337	23074646	255	98170											
NPHS1	4868	broad.mit.edu	37	chr19	36333449	36333451	+	In_Frame_Del	DEL	CTC	-	-													gctctggtcctcctcatcttCtccctggaggcccaagagtc							TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36333451	-	-	36333449	7	5	99	1	0	1	0	1	0	0	0	0	10677	922	32	0	1435	0	NPHS1	19	36333449	In_Frame_Del	DEL	CTC	TCGA-38-4628-01A-01D-1265-08	279112	36333449	22795534	256	98171											
RYR1	6261	broad.mit.edu	37	chr19	39025446	39025446	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagatggtgctgcagatgatCagtgcctgcaaaggtgcccc	14	10	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39025446	T	T	39025446	2	4	99	1	0	0	0	0	0	0	0	1	13879	816	29	4		4	RYR1	19	39025446	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	2691997	39025446	20103537	257	98172											
PPP1R13L	10848	broad.mit.edu	37	chr19	45885837	45885837	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgtgcagcgcggcccacCaccagtcggtctcctccggc	13	19	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45885837	T	T	45885837	4	4	99	1	0	0	0	0	0	1	0	0	12459	595	21	4	98	4	PPP1R13L	19	45885837	Nonsense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	6860391	45885837	13243146	258	98173											
LIG1	3978	broad.mit.edu	37	chr19	48660337	48660337	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtcagagagggaagcatTgttctcaggagatgtggcag	17	5	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48660337	G	G	48660337	3	3	99	1	0	0	0	0	1	0	0	0	8853	1812	63	5	2551	5	LIG1	19	48660337	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	2774500	48660337	10468646	259	98174											
RPL13A	23521	broad.mit.edu	37	chr19	49993863	49993863	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgtggggactgcaggtggtGacgggcaggcggccggtgat	22	8	0	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49993863	A	A	49993863	1	1	99	0	1	0	0	0	0	0	0	0	13671	1305	45	4		4	RPL13A	19	49993863	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	1333526	49993863	9135120	260	98175											
ZNF577	84765	broad.mit.edu	37	chr19	52380585	52380585	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgctatccctgggggttctCcttgctccaacttgaagagc	10	13	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52380585	G	G	52380585	3	3	99	1	0	0	0	0	1	0	0	0	18136	855	30	4	1232	4	ZNF577	19	52380585	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	2386722	52380585	6748398	261	98176											
KIR3DL1	3811	broad.mit.edu	37	chr19	55378197	55378197	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttctagggagacaacaGccctgtctcaaaaccaggtt	10	10	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55378197	T	T	55378197	1	4	99	0	1	0	0	0	0	0	0	0	8391	986	34	3		3	KIR3DL1	19	55378197	3'UTR	SNP	G	TCGA-38-4628-01A-01D-1265-08	2997612	55378197	3750786	262	98177											
ZNF587	84914	broad.mit.edu	37	chr19	58301466	58301466	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcttgttgctgatggctAtgtgtcatgatcagtggtcc	12	9	3	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58301466	G	G	58301466	1	3	99	0	1	0	0	0	0	0	0	0	18147	464	16	5		5	ZNF587	19	58301466	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	2923269	58301466	827517	263	98178											
SLC4A11	83959	broad.mit.edu	37	chr20	3209407	3209407	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcccctgtccacagggcctCactcctccctatgtcccatg	7	20	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3209407	A	A	3209407	1	1	99	0	1	0	0	0	0	0	0	0	14766	841	29	3		3	SLC4A11	20	3209407	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		3209407	59816113	264	98179											
ATRN	8455	broad.mit.edu	37	chr20	3471345	3471345	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagctcctcaaatttcactGacattggcacacagatctca	7	12	3	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3471345	A	A	3471345	1	1	99	0	1	0	0	0	0	0	0	0	1210	1305	45	4		4	ATRN	20	3471345	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	261938	3471345	59554175	265	98180											
SPEF1	25876	broad.mit.edu	37	chr20	3759337	3759337	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtaccgtgccccccaacccCagctgtgtgcagagatcacc	9	18	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3759337	T	T	3759337	1	4	99	0	1	0	0	0	0	0	0	0	15152	609	21	4		4	SPEF1	20	3759337	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	287992	3759337	59266183	266	98181											
RALGAPA2	57186	broad.mit.edu	37	chr20	20506983	20506983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggacatcgcaagctacCtgggccacgattttgttggg	13	9	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20506983	A	A	20506983	3	1	99	1	0	0	0	0	1	0	0	0	13122	680	24	2	2063	2	RALGAPA2	20	20506983	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	16747646	20506983	42518537	267	98182											
NECAB3	63941	broad.mit.edu	37	chr20	32260123	32260123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaactcttgacttcccaCccaacctcccaactctccct	1	21	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32260123	A	A	32260123	1	1	99	0	1	0	0	0	0	0	0	0	10401	522	18	3		3	NECAB3	20	32260123	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	11753140	32260123	30765397	268	98183											
CHMP4B	128866	broad.mit.edu	37	chr20	32440005	32440005	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatagccctaccatcaaaAcccggtgagtgcttctagag	8	12	3	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32440005	G	G	32440005	2	3	99	1	0	0	0	0	0	0	0	1	3388	40	2	5		5	CHMP4B	20	32440005	Silent	SNP	A	TCGA-38-4628-01A-01D-1265-08	179882	32440005	30585515	269	98184											
TRPC4AP	26133	broad.mit.edu	37	chr20	33632263	33632263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagatgatttagtaagggCctcagagctataatctcaaa	8	7	2	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33632263	A	A	33632263	1	1	99	0	1	0	0	0	0	0	0	0	16706	754	26	3		3	TRPC4AP	20	33632263	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	1192258	33632263	29393257	270	98185											
SPAG4	6676	broad.mit.edu	37	chr20	34207294	34207294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggaaaagcaccaaaacCccgccctacaggcggagctt	11	14	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34207294	A	A	34207294	1	1	99	0	1	0	0	0	0	0	0	0	15096	638	22	2		2	SPAG4	20	34207294	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	575031	34207294	28818226	271	98186											
EYA2	2139	broad.mit.edu	37	chr20	45811776	45811776	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcatcatccttcatgtggGgatgataacagggctcacct	10	10	4	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45811776	T	T	45811776	1	4	99	0	1	0	0	0	0	0	0	0	5372	1247	43	2		2	EYA2	20	45811776	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	11604482	45811776	17213744	272	98187											
ATP9A	10079	broad.mit.edu	37	chr20	50238754	50238754	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgtttattagtttttgAggccggcctgtcatctgcaa	10	9	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50238754	G	G	50238754	1	3	99	0	1	0	0	0	0	0	0	0	1202	319	11	5		5	ATP9A	20	50238754	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	4426978	50238754	12786766	273	98188											
ZNF831	128611	broad.mit.edu	37	chr20	57768042	57768042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggcagtggggcagaactGggctttcctctgcagaaaga	15	8	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57768042	T	T	57768042	2	4	99	1	0	0	0	0	0	0	0	1	18314	1335	47	2		2	ZNF831	20	57768042	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	7529288	57768042	5257478	274	98189											
CHRNA4	1137	broad.mit.edu	37	chr20	61990970	61990970	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgagatgttggccacgggtCgggaccacttgttgtaaccg	14	11	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61990970	T	T	61990970	3	4	99	1	0	0	0	0	1	0	0	0	3416	884	31	4	1745	4	CHRNA4	20	61990970	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	4222928	61990970	1034550	275	98190											
ZGPAT	84619	broad.mit.edu	37	chr20	62364770	62364770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgtgttgtcactgtgtGgctgctccctgcttcctttg	11	12	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62364770	T	T	62364770	1	4	99	0	1	0	0	0	0	0	0	0	17800	1363	47	2		2	ZGPAT	20	62364770	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	373800	62364770	660750	276	98191											
TPTE	7179	broad.mit.edu	37	chr21	10909657	10909657	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccacccatcagtcgagcaCaggtctcctggatggctccc	9	17	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10909657	T	T	10909657	1	4	99	0	1	0	0	0	0	0	0	0	16554	493	17	4		4	TPTE	21	10909657	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		10909657	37220238	277	98192											
CYYR1	116159	broad.mit.edu	37	chr21	27852642	27852642	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcctgaggatgcccacgcGggtcgccctgtggttcttca	13	14	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27852642	A	A	27852642	3	1	99	1	0	0	0	0	1	0	0	0	4244	1116	39	4	189	4	CYYR1	21	27852642	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	16942985	27852642	20277253	278	98193											
RWDD2B	10069	broad.mit.edu	37	chr21	30378852	30378852	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccctggctccattaacactGaacactttttcttcaaaaat	3	13	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30378852	T	T	30378852	3	4	99	1	0	0	0	0	1	0	0	0	13867	1281	45	3	117	3	RWDD2B	21	30378852	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	2526210	30378852	17751043	279	98194											
ERG	2078	broad.mit.edu	37	chr21	39762835	39762835	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgttcagttgaaggaatttCtcaccaataccaatttactt	5	9	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39762835	G	G	39762835	1	3	99	0	1	0	0	0	0	0	0	0	5264	928	32	4		4	ERG	21	39762835	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	9383983	39762835	8367060	280	98195											
PRDM15	63977	broad.mit.edu	37	chr21	43222004	43222004	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacattctttggtgaaagagGaaaccgagttaattttgttc	10	5	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43222004	T	T	43222004	1	4	99	0	1	0	0	0	0	0	0	0	12562	1189	41	3		3	PRDM15	21	43222004	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	3459169	43222004	4907891	281	98196											
CSTB	1476	broad.mit.edu	37	chr21	45194608	45194608	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccttaaacacagggaacttCttgttttctttctcttcaag	6	10	4	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45194608	G	G	45194608	3	3	99	1	0	0	0	0	1	0	0	0	4016	912	32	4	205	4	CSTB	21	45194608	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	1972604	45194608	2935287	282	98197											
TRPM2	7226	broad.mit.edu	37	chr21	45821603	45821603	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcacccccgcggcccgCgcccgtgccttcttcaccgc	12	21	2	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45821603	T	T	45821603	2	4	99	1	0	0	0	0	0	0	0	1	16711	755	27	4		4	TRPM2	21	45821603	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	626995	45821603	2308292	283	98198											
LSS	4047	broad.mit.edu	37	chr21	47610986	47610986	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccttggcctcactggaacGcacagacggcacccagcagg	11	17	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47610986	A	A	47610986	1	1	99	0	1	0	0	0	0	0	0	0	9152	1102	38	4		4	LSS	21	47610986	3'UTR	SNP	G	TCGA-38-4628-01A-01D-1265-08	1789383	47610986	518909	284	98199											
LSS	4047	broad.mit.edu	37	chr21	47648332	47648332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgagctcgctgacgctcCgcggaagcaacttacggtgt	12	14	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47648332	A	A	47648332	1	1	99	0	1	0	0	0	0	0	0	0	9152	667	23	1		1	LSS	21	47648332	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	37346	47648332	481563	285	98200											
EMID1	129080	broad.mit.edu	37	chr22	29621067	29621067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacagtggtgggcaggggGgcctgaggaggcaaggatca	20	7	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29621067	T	T	29621067	1	4	99	0	1	0	0	0	0	0	0	0	5133	1247	43	2		2	EMID1	22	29621067	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08		29621067	21683499	286	98201											
MYH9	4627	broad.mit.edu	37	chr22	36678579	36678579	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggagggaaacgggatgggGggacggggcggagggcagga	25	5	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36678579	C	C	36678579	1	2	99	0	1	0	0	0	0	0	0	0	10136	1247	43	4		4	MYH9	22	36678579	3'UTR	SNP	G	TCGA-38-4628-01A-01D-1265-08	7057512	36678579	14625987	287	98202											
KCNJ4	3761	broad.mit.edu	37	chr22	38824024	38824024	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgccatgtagcgctgcgaCttgttgctcaggttggcgaa	13	11	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38824024	T	T	38824024	2	4	99	1	0	0	0	0	0	0	0	1	8123	564	20	4		4	KCNJ4	22	38824024	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	2145445	38824024	12480542	288	98203											
ST13	6767	broad.mit.edu	37	chr22	41244290	41244290	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatacaaactaactaccgtCtcctcacctagatcactttc	2	14	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41244290	T	T	41244290	1	4	99	0	1	0	0	0	0	0	0	0	15328	928	32	4		4	ST13	22	41244290	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08	2420266	41244290	10060276	289	98204											
PARVB	29780	broad.mit.edu	37	chr22	44532418	44532418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaagtggacccctgtcttGcccttccaggccctgctgcc	10	16	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44532418	T	T	44532418	1	4	99	0	1	0	0	0	0	0	0	0	11563	1334	46	3		3	PARVB	22	44532418	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	3288128	44532418	6772148	290	98205											
SAPS2	9701	broad.mit.edu	37	chr22	50875986	50875986	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccaacttcgtggatcagTttggcttcaatgatgaggag	12	8	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50875986	G	G	50875986	3	3	99	1	0	0	0	0	1	0	0	0	13949	1725	60	5	1704	5	SAPS2	22	50875986	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	6343568	50875986	428580	291	98206											
ASMTL	8623	broad.mit.edu	37	chrX	1554721	1554721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgcaagtcccacggtcCcattcgcagaagtcacttgt	9	14	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1554721	T	T	1554721	1	4	99	0	1	0	0	0	0	0	0	0	1050	638	22	4		4	ASMTL	23	1554721	Intron	SNP	C	TCGA-38-4628-01A-01D-1265-08		1554721	153715839	292	98207											
EGFL6	25975	broad.mit.edu	37	chrX	13624396	13624396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcaccagtatactattaTcagtttcccagataaagaaa	6	8	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13624396	C	C	13624396	1	2	99	0	1	0	0	0	0	0	0	0	5003	1450	50	5		5	EGFL6	23	13624396	Intron	SNP	T	TCGA-38-4628-01A-01D-1265-08	12069675	13624396	141646164	293	98208											
PIR	8544	broad.mit.edu	37	chrX	15477694	15477694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatagagagagtgtggaaaGggtgaatgtactggaagtgg	17	1	0	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15477694	T	T	15477694	1	4	99	0	1	0	0	0	0	0	0	0	12039	1015	35	2		2	PIR	23	15477694	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	1853298	15477694	139792866	294	98209											
YY2	404281	broad.mit.edu	37	chrX	21861374	21861374	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccacataagatggcaaacTgctgttttcaatcgtgcctt	7	10	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21861374	A	A	21861374	2	1	99	1	0	0	0	0	0	0	0	1	17636	1567	55	5		5	YY2	23	21861374	Silent	SNP	T	TCGA-38-4628-01A-01D-1265-08	6383680	21861374	133409186	295	98210											
FAM48B1	100130302	broad.mit.edu	37	chrX	24381622	24381622	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcgtggccctctgtaaagCcacagcaggagcagtctgac	11	12	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24381622	T	T	24381622	3	4	99	1	0	0	0	0	1	0	0	0	5624	739	26	4	747	4	FAM48B1	23	24381622	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	2520248	24381622	130888938	296	98211											
CYBB	1536	broad.mit.edu	37	chrX	37651312	37651312	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgattgcacttcactctGgtaagtttattaaagaaaac	8	6	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37651312	C	C	37651312	3	2	99	1	0	0	0	0	1	0	0	0	4166	1362	47	4	351	4	CYBB	23	37651312	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	13269690	37651312	117619248	297	98212											
ZNF81	347344	broad.mit.edu	37	chrX	47747306	47747306	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cataccatatcgtatattatGatgaaaaagtatcaaaaaga	5	5	1	3			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47747306	T	T	47747306	1	4	99	0	1	0	0	0	0	0	0	0	18303	1305	45	3		3	ZNF81	23	47747306	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	10095994	47747306	107523254	298	98213											
ZNF630	57232	broad.mit.edu	37	chrX	47919181	47919181	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaggcacagaacaggaaGcattatacttaggtggtctc	10	9	2	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47919181	T	T	47919181	3	4	99	1	0	0	0	0	1	0	0	0	18181	971	34	3	1327	3	ZNF630	23	47919181	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	171875	47919181	107351379	299	98214											
SSX7	280658	broad.mit.edu	37	chrX	52684375	52684375	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggccctccaacctctgAttacatttttgaaagggaat	7	11	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52684375	C	C	52684375	1	2	99	0	1	0	0	0	0	0	0	0	15327	348	12	5		5	SSX7	23	52684375	5'Flank	SNP	A	TCGA-38-4628-01A-01D-1265-08	4765194	52684375	102586185	300	98215											
HUWE1	10075	broad.mit.edu	37	chrX	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-													gggccagggccggggccgggGccggggccggggccggggcc					rs78801842	by1000genomes	TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652829	6	5	99	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652829	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	TCGA-38-4628-01A-01D-1265-08	968454	53652829	101617731	301	98216											
MTMR8	55613	broad.mit.edu	37	chrX	63488494	63488494	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagatgcccatgtcccCagagaaacccctggcctcag	8	18	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63488494	T	T	63488494	3	4	99	1	0	0	0	0	1	0	0	0	10043	594	21	4	80	4	MTMR8	23	63488494	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	9835665	63488494	91782066	302	98217											
KIF4A	24137	broad.mit.edu	37	chrX	69563564	69563564	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttgcagacagagcaagcGaatgaaaaaatgaacgccaa	10	7	0	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69563564	A	A	69563564	2	1	99	1	0	0	0	0	0	0	0	1	8373	1045	37	4		4	KIF4A	23	69563564	Silent	SNP	G	TCGA-38-4628-01A-01D-1265-08	6075070	69563564	85706996	303	98218											
SNX12	29934	broad.mit.edu	37	chrX	70288110	70288110	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcgtcggtcaggtcctgcGgcttcgagttaaggcgccgg	16	11	1	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70288110	A	A	70288110	3	1	99	1	0	0	0	0	1	0	0	0	14997	1116	39	4	457	4	SNX12	23	70288110	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	724546	70288110	84982450	304	98219											
ZMYM3	9203	broad.mit.edu	37	chrX	70472960	70472960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccgaggatggagaagggCcagggggggcccatcctcga	17	12	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70472960	A	A	70472960	3	1	99	1	0	0	0	0	1	0	0	0	17827	739	26	3	4080	3	ZMYM3	23	70472960	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	184850	70472960	84797600	305	98220											
TAF1	6872	broad.mit.edu	37	chrX	70678259	70678259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagattgttattgtgcctGcaagtggggctaggggaatg	15	4	0	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70678259	T	T	70678259	1	4	99	0	1	0	0	0	0	0	0	0	15632	1334	46	3		3	TAF1	23	70678259	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	205299	70678259	84592301	306	98221											
TBX22	50945	broad.mit.edu	37	chrX	79286464	79286464	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctcctttcatccttcctatGacttttatagatacaatttc	3	11	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79286464	A	A	79286464	3	1	99	1	0	0	0	0	1	0	0	0	15780	1290	45	4	1447	4	TBX22	23	79286464	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	8608205	79286464	75984096	307	98222											
BRWD3	254065	broad.mit.edu	37	chrX	79979212	79979212	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgaatgacacaatcctaAattatactctacagcaaaat	4	8	1	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79979212	C	C	79979212	1	2	99	0	1	0	0	0	0	0	0	0	1535	29	1	5		5	BRWD3	23	79979212	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	692748	79979212	75291348	308	98223											
ZNF711	7552	broad.mit.edu	37	chrX	84526697	84526697	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacagcactacagatgcaTctggctttaaacgacatgtg	8	9	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84526697	A	A	84526697	3	1	99	1	0	0	0	0	1	0	0	0	18244	1435	50	5	2175	5	ZNF711	23	84526697	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	4547485	84526697	70743863	309	98224											
DACH2	117154	broad.mit.edu	37	chrX	86071036	86071036	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgcatgtcatttatttcaGatactggaattccagatatt	6	7	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86071036	T	T	86071036	5	4	99	1	0	0	0	0	0	0	1	0	4254	956	33	3	1726	3	DACH2	23	86071036	Splice_Site	SNP	G	TCGA-38-4628-01A-01D-1265-08	1544339	86071036	69199524	310	98225											
SYTL4	94121	broad.mit.edu	37	chrX	99942191	99942191	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccagtcacaaagatgtTcccgaaatcaccagcttcac	6	15	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99942191	A	A	99942191	3	1	99	1	0	0	0	0	1	0	0	0	15604	1783	62	5	986	5	SYTL4	23	99942191	Missense_Mutation	SNP	T	TCGA-38-4628-01A-01D-1265-08	13871155	99942191	55328369	311	98226											
TCEAL6	158931	broad.mit.edu	37	chrX	101395654	101395654	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatctaccagggaaagcagGgttgacaataatctcatcag	9	8	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101395654	T	T	101395654	1	4	99	0	1	0	0	0	0	0	0	0	15797	1247	43	2		2	TCEAL6	23	101395654	3'UTR	SNP	G	TCGA-38-4628-01A-01D-1265-08	1453463	101395654	53874906	312	98227											
ESX1	80712	broad.mit.edu	37	chrX	103498715	103498715	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttacatcctccgcgccccGcccaccacgtcccccaaaaa	4	21	0	0			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103498715	A	A	103498715	1	1	99	0	1	0	0	0	0	0	0	0	5305	1102	38	4		4	ESX1	23	103498715	Intron	SNP	G	TCGA-38-4628-01A-01D-1265-08	2103061	103498715	51771845	313	98228											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105011610	105011610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaacagttctttgctgCctttatcctccaaagagctt	7	11	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105011610	A	A	105011610	3	1	99	1	0	0	0	0	1	0	0	0	7732	739	26	3	2055	3	IL1RAPL2	23	105011610	Missense_Mutation	SNP	C	TCGA-38-4628-01A-01D-1265-08	1512895	105011610	50258950	314	98229											
MCTS1	28985	broad.mit.edu	37	chrX	119742039	119742039	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcctttttctgttgagtcAttagtcttattattaatata	5	5	3	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119742039	G	G	119742039	1	3	99	0	1	0	0	0	0	0	0	0	9495	232	8	5		5	MCTS1	23	119742039	Intron	SNP	A	TCGA-38-4628-01A-01D-1265-08	14730429	119742039	35528521	315	98230											
XIAP	331	broad.mit.edu	37	chrX	123019496	123019496	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttagaaaaggtggacaagtCctattttcaagagaagatga	10	4	1	4			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123019496	G	G	123019496	1	3	99	0	1	0	0	0	0	0	0	0	17555	870	30	4		4	XIAP	23	123019496	5'UTR	SNP	C	TCGA-38-4628-01A-01D-1265-08	3277457	123019496	32251064	316	98231											
MCF2	4168	broad.mit.edu	37	chrX	138708867	138708867	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcagtgtcaggcacttccaGatttgttagcagaatttttc	8	8	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138708867	T	T	138708867	3	4	99	1	0	0	0	0	1	0	0	0	9471	933	33	3	2454	3	MCF2	23	138708867	Missense_Mutation	SNP	G	TCGA-38-4628-01A-01D-1265-08	15689371	138708867	16561693	317	98232											
GABRQ	55879	broad.mit.edu	37	chrX	151821213	151821213	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcgatctcccctccacCtcagagcaggcccggcacag	10	18	2	2			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151821213	T	T	151821213	2	4	99	1	0	0	0	0	0	0	0	1	6235	668	24	4		4	GABRQ	23	151821213	Silent	SNP	C	TCGA-38-4628-01A-01D-1265-08	13112346	151821213	3449347	318	98233											
GDI1	2664	broad.mit.edu	37	chrX	153668809	153668809	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggcaagagcccatatttAtacccgctctacggcttggg	10	11	1	1			TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153668809	T	T	153668809	3	4	99	1	0	0	0	0	1	0	0	0	6384	446	16	5	697	5	GDI1	23	153668809	Missense_Mutation	SNP	A	TCGA-38-4628-01A-01D-1265-08	1847596	153668809	1601751	319	98234											
CPSF3L	54973	broad.mit.edu	37	chr1	1247190	1247190	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaagtgcaggcccagggtCtgtccagctgggagagggca	17	10	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1247190	T	T	1247190	1	4	100	0	1	0	0	0	0	0	0	0	3859	928	32	4		4	CPSF3L	1	1247190	3'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08		1247190	248003431	1	98235											
DVL1	1855	broad.mit.edu	37	chr1	1273345	1273345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggaagggcaggtaggggCggcgttctcaccttcactct	16	11	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1273345	A	A	1273345	1	1	100	0	1	0	0	0	0	0	0	0	4875	783	27	3		3	DVL1	1	1273345	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	26155	1273345	247977276	2	98236											
ARHGEF16	27237	broad.mit.edu	37	chr1	3390029	3390029	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgcgggggcctgcccatGctctccttcctgatcctccc	11	18	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3390029	A	A	3390029	3	1	100	1	0	0	0	0	1	0	0	0	901	1319	46	4	1274	4	ARHGEF16	1	3390029	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2116684	3390029	245860592	3	98237											
CASZ1	54897	broad.mit.edu	37	chr1	10713962	10713962	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcgtcgttgctggactcctCgtgctccgtgtccttggcgc	13	14	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10713962	A	A	10713962	4	1	100	1	0	0	0	0	0	1	0	0	2711	893	31	3	3175	3	CASZ1	1	10713962	Nonsense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	7323933	10713962	238536659	4	98238											
VPS13D	55187	broad.mit.edu	37	chr1	12348415	12348415	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaacttgcaaaatctggtCagcatttgaacattgtgatc	8	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12348415	T	T	12348415	1	4	100	0	1	0	0	0	0	0	0	0	17319	841	29	4		4	VPS13D	1	12348415	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1634453	12348415	236902206	5	98239											
RCC2	55920	broad.mit.edu	37	chr1	17747100	17747100	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taacggacaaaggctattatCtgagatcaattacccacatt	6	9	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17747100	G	G	17747100	1	3	100	0	1	0	0	0	0	0	0	0	13282	928	32	4		4	RCC2	1	17747100	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5398685	17747100	231503521	6	98240											
HP1BP3	50809	broad.mit.edu	37	chr1	21083527	21083527	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttaatttctaacatagtAaatgttgacagatataaccc	5	6	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21083527	C	C	21083527	1	2	100	0	1	0	0	0	0	0	0	0	7395	377	13	5		5	HP1BP3	1	21083527	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	3336427	21083527	228167094	7	98241											
MYOM3	127294	broad.mit.edu	37	chr1	24400733	24400733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcccaaatcctcgaggCcgggttctttcaggatgacc	12	12	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24400733	A	A	24400733	3	1	100	1	0	0	0	0	1	0	0	0	10187	739	26	3	1488	3	MYOM3	1	24400733	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	3317206	24400733	224849888	8	98242											
BAI2	576	broad.mit.edu	37	chr1	32196651	32196651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggggggtcccctccggcCgggccctgggggcatcctca	17	17	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32196651	A	A	32196651	3	1	100	1	0	0	0	0	1	0	0	0	1304	652	23	1	647	1	BAI2	1	32196651	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	7795918	32196651	217053970	9	98243											
CSMD2	114784	broad.mit.edu	37	chr1	34011858	34011858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatcccattatttttcagGgaagaaaagggagtggagaa	11	5	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34011858	T	T	34011858	1	4	100	0	1	0	0	0	0	0	0	0	3979	1247	43	2		2	CSMD2	1	34011858	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1815207	34011858	215238763	10	98244											
CSMD2	114784	broad.mit.edu	37	chr1	34209244	34209244	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggtcagtaagcatccCcaacattctgcctgcaccac	9	14	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34209244	T	T	34209244	1	4	100	0	1	0	0	0	0	0	0	0	3979	638	22	4		4	CSMD2	1	34209244	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	197386	34209244	215041377	11	98245											
KLF17	128209	broad.mit.edu	37	chr1	44596259	44596259	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgagcttagacgacataTgcgggtacacaccagatatc	10	9	0	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44596259	A	A	44596259	3	1	100	1	0	0	0	0	1	0	0	0	8416	1464	51	5	1011	5	KLF17	1	44596259	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	10387015	44596259	204654362	12	98246											
DMRTB1	63948	broad.mit.edu	37	chr1	53930525	53930525	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaaggagaacactggtgaGtgagctccagtcttccagct	12	10	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53930525	A	A	53930525	1	1	100	0	1	0	0	0	0	0	0	0	4630	1044	36	4		4	DMRTB1	1	53930525	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	9334266	53930525	195320096	13	98247											
USP24	23358	broad.mit.edu	37	chr1	55547285	55547285	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggttatattaactcatattCtaaaaccagtccctttatgg	6	8	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55547285	G	G	55547285	1	3	100	0	1	0	0	0	0	0	0	0	17181	928	32	4		4	USP24	1	55547285	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1616760	55547285	193703336	14	98248											
C8A	731	broad.mit.edu	37	chr1	57347348	57347348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaggccactgtggtgtaGgtggcagagaggcagaggcc	18	8	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57347348	T	T	57347348	1	4	100	0	1	0	0	0	0	0	0	0	2441	1015	35	2		2	C8A	1	57347348	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1800063	57347348	191903273	15	98249											
DAB1	1600	broad.mit.edu	37	chr1	57489281	57489281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggtctgagatgaagatGggataaaggcatcacctgga	15	5	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57489281	T	T	57489281	3	4	100	1	0	0	0	0	1	0	0	0	4250	1348	47	2	865	2	DAB1	1	57489281	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	141933	57489281	191761340	16	98250											
SGIP1	84251	broad.mit.edu	37	chr1	67155077	67155077	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaccctgacaggtggcatCtgaaagacagtcactgcggt	11	11	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67155077	A	A	67155077	1	1	100	0	1	0	0	0	0	0	0	0	14319	928	32	3		3	SGIP1	1	67155077	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	9665796	67155077	182095544	17	98251											
LRRC7	57554	broad.mit.edu	37	chr1	70505515	70505515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagaatatccctcctgcCtttagtgttactttattggc	7	9	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70505515	A	A	70505515	1	1	100	0	1	0	0	0	0	0	0	0	9107	696	24	2		2	LRRC7	1	70505515	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3350438	70505515	178745106	18	98252											
IFI44L	10964	broad.mit.edu	37	chr1	79094107	79094107	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattagataatcctacatctCacattatgattctaatcctt	2	9	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79094107	A	A	79094107	1	1	100	0	1	0	0	0	0	0	0	0	7588	841	29	3		3	IFI44L	1	79094107	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	8588592	79094107	170156514	19	98253											
COL11A1	1301	broad.mit.edu	37	chr1	103481273	103481273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtagaccatcagcccctGgtaagccaggacgtcctggg	13	13	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103481273	T	T	103481273	3	4	100	1	0	0	0	0	1	0	0	0	3699	1348	47	2	4205	2	COL11A1	1	103481273	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	24387166	103481273	145769348	20	98254											
OVGP1	5016	broad.mit.edu	37	chr1	111964312	111964312	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtctgtaaggggcaggagGaagagatataaagactgggc	17	4	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111964312	A	A	111964312	1	1	100	0	1	0	0	0	0	0	0	0	11419	1189	41	4		4	OVGP1	1	111964312	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	8483039	111964312	137286309	21	98255											
C1orf162	128346	broad.mit.edu	37	chr1	112018547	112018547	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaattgcctctcattgttActactcttatatgacaatca	3	10	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112018547	G	G	112018547	1	3	100	0	1	0	0	0	0	0	0	0	2030	406	14	5		5	C1orf162	1	112018547	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	54235	112018547	137232074	22	98256											
RSBN1	54665	broad.mit.edu	37	chr1	114309076	114309076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctacccactgtacgcaCtgaagaaagaaaaaagttac	6	10	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114309076	T	T	114309076	1	4	100	0	1	0	0	0	0	0	0	0	13807	579	20	4		4	RSBN1	1	114309076	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2290529	114309076	134941545	23	98257											
SLC22A15	55356	broad.mit.edu	37	chr1	116569709	116569709	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcttaagaggatgtggGtcaatgagcagcattattcc	11	6	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116569709	C	C	116569709	1	2	100	0	1	0	0	0	0	0	0	0	14559	1276	44	4		4	SLC22A15	1	116569709	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2260633	116569709	132680912	24	98258											
MAN1A2	10905	broad.mit.edu	37	chr1	118057337	118057338	+	Intron	DEL	GA	-	-													tgactaagtaatatattttgGagagagagaatcagtgggat							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118057338	-	-	118057337	6	5	100	0	1	1	0	1	0	0	0	0	9303	1189	41	0		0	MAN1A2	1	118057337	Intron	DEL	GA	TCGA-38-4629-01A-02D-1265-08	1487628	118057337	131193284	25	98259											
WARS2	10352	broad.mit.edu	37	chr1	119575582	119575582	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctggcacacagtgtatgcTaattctttggcttttgctga	9	9	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119575582	C	C	119575582	2	2	100	1	0	0	0	0	0	0	0	1	17377	1519	53	5		5	WARS2	1	119575582	Silent	SNP	T	TCGA-38-4629-01A-02D-1265-08	1518245	119575582	129675039	26	98260											
HMGCS2	3158	broad.mit.edu	37	chr1	120302034	120302034	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcccaagttcaagcccattCaacatcccttgcatattcaa	4	14	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120302034	A	A	120302034	1	1	100	0	1	0	0	0	0	0	0	0	7300	841	29	3		3	HMGCS2	1	120302034	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	726452	120302034	128948587	27	98261											
ITGA10	8515	broad.mit.edu	37	chr1	145533105	145533105	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgactggggaggctctgtGctatggcttgaaggaggcca	16	7	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145533105	A	A	145533105	2	1	100	1	0	0	0	0	0	0	0	1	7943	1306	46	4		4	ITGA10	1	145533105	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	25231071	145533105	103717516	28	98262											
POLR3C	10623	broad.mit.edu	37	chr1	145609339	145609339	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttctgcttgagtcattgTactggggagtctgagagcta	12	6	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145609339	C	C	145609339	1	2	100	0	1	0	0	0	0	0	0	0	12325	1653	57	5		5	POLR3C	1	145609339	5'UTR	SNP	T	TCGA-38-4629-01A-02D-1265-08	76234	145609339	103641282	29	98263											
HIST2H2BE	8349	broad.mit.edu	37	chr1	149857805	149857805	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagcgccaggtcccggcaGggactcacttggagctggtg	17	12	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149857805	T	T	149857805	1	4	100	0	1	0	0	0	0	0	0	0	7246	1015	35	2		2	HIST2H2BE	1	149857805	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	4248466	149857805	99392816	30	98264											
SV2A	9900	broad.mit.edu	37	chr1	149881043	149881043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcaaggcccggaccccCcagcgctggtaccaggtccc	12	18	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149881043	A	A	149881043	3	1	100	1	0	0	0	0	1	0	0	0	15535	624	22	2	996	2	SV2A	1	149881043	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	23238	149881043	99369578	31	98265											
OTUD7B	56957	broad.mit.edu	37	chr1	149919162	149919162	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtcttcacctgtgcatcaGaggacagtgggatccacttc	10	11	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149919162	A	A	149919162	3	1	100	1	0	0	0	0	1	0	0	0	11413	942	33	4	1226	4	OTUD7B	1	149919162	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	38119	149919162	99331459	32	98266											
PRPF3	9129	broad.mit.edu	37	chr1	150321643	150321643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttccagatgatgaggaGtctgatgaggaagctgtgaa	13	6	2	6			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150321643	T	T	150321643	3	4	100	1	0	0	0	0	1	0	0	0	12671	1020	36	3	1908	3	PRPF3	1	150321643	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	402481	150321643	98928978	33	98267											
CGN	57530	broad.mit.edu	37	chr1	151503155	151503155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagcgggaggtgctccggcGaggcaaggctgagctggagg	21	9	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151503155	T	T	151503155	3	4	100	1	0	0	0	0	1	0	0	0	3333	1058	37	3	2550	3	CGN	1	151503155	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1181512	151503155	97747466	34	98268											
HRNR	388697	broad.mit.edu	37	chr1	152192637	152192637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccgtgttgtccgtggcCggaggagtgacctgagccag	17	10	0	3	rs138042599	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152192637	T	T	152192637	3	4	100	1	0	0	0	0	1	0	0	0	7426	652	23	4	7088	4	HRNR	1	152192637	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	689482	152192637	97057984	35	98269											
SPRR4	163778	broad.mit.edu	37	chr1	152944454	152944454	+	Frame_Shift_Del	DEL	C	-	-													tgaagcagccttgtcagccaCcccctgttaaatgtcaagag							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152944454	-	-	152944454	7	5	100	1	0	1	0	1	0	0	0	0	15222	507	18	0	90	0	SPRR4	1	152944454	Frame_Shift_Del	DEL	C	TCGA-38-4629-01A-02D-1265-08	751817	152944454	96306167	36	98270											
TPM3	7170	broad.mit.edu	37	chr1	154155629	154155629	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctactgctcgcgctccggttCctgcctcctccgctcggcgt	10	19	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154155629	G	G	154155629	1	3	100	0	1	0	0	0	0	0	0	0	16531	870	30	4		4	TPM3	1	154155629	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1211175	154155629	95094992	37	98271											
SCAMP3	10067	broad.mit.edu	37	chr1	155228817	155228817	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaatcactcccccttcTctccatccctggatcctctc	4	18	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155228817	C	C	155228817	1	2	100	0	1	0	0	0	0	0	0	0	13984	1566	54	5		5	SCAMP3	1	155228817	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	1073188	155228817	94021804	38	98272											
C1orf85	112770	broad.mit.edu	37	chr1	156264460	156264460	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcatatctgagtctatttCacccacccccagtctttagt	4	13	5	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156264460	T	T	156264460	1	4	100	0	1	0	0	0	0	0	0	0	2084	841	29	4		4	C1orf85	1	156264460	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1035643	156264460	92986161	39	98273											
NTRK1	4914	broad.mit.edu	37	chr1	156841342	156841342	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catctggagccagaggggctCtccaaagacttcagccccag	11	14	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156841342	A	A	156841342	1	1	100	0	1	0	0	0	0	0	0	0	10801	928	32	3		3	NTRK1	1	156841342	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	576882	156841342	92409279	40	98274											
ARHGEF11	9826	broad.mit.edu	37	chr1	156928983	156928983	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggatggggtactgggggtgGagggggatcccttctgctga	20	6	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156928983	C	C	156928983	1	2	100	0	1	0	0	0	0	0	0	0	898	1189	41	4		4	ARHGEF11	1	156928983	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	87641	156928983	92321638	41	98275											
FCRL1	115350	broad.mit.edu	37	chr1	157767630	157767630	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgggaaagacaaaagtcaGagacaaatttactcccccat	7	10	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157767630	T	T	157767630	1	4	100	0	1	0	0	0	0	0	0	0	5851	957	33	3		3	FCRL1	1	157767630	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	838647	157767630	91482991	42	98276											
OR6K6	128371	broad.mit.edu	37	chr1	158725087	158725087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaatccactccgttaccCaaccatcatgattcccaaac	3	17	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158725087	A	A	158725087	3	1	100	1	0	0	0	0	1	0	0	0	11298	594	21	2	484	2	OR6K6	1	158725087	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	957457	158725087	90525534	43	98277											
DNM3	26052	broad.mit.edu	37	chr1	172007681	172007681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccttagtctatttgtcacGttgcttcttaggtagcaagt	9	8	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172007681	T	T	172007681	1	4	100	0	1	0	0	0	0	0	0	0	4713	1160	40	3		3	DNM3	1	172007681	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	13282594	172007681	77242940	44	98278											
ASTN1	460	broad.mit.edu	37	chr1	176837984	176837984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttagtttattgattacctggGacctaactcatcctcacatc	5	11	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176837984	T	T	176837984	3	4	100	1	0	0	0	0	1	0	0	0	1068	1174	41	3	253	3	ASTN1	1	176837984	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	4830303	176837984	72412637	45	98279											
C1orf125	126859	broad.mit.edu	37	chr1	179426078	179426078	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgatttcaatcacttcAttttttccatactgttcaaa	3	9	5	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179426078	T	T	179426078	1	4	100	0	1	0	0	0	0	0	0	0	2013	232	8	5		5	C1orf125	1	179426078	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	2588094	179426078	69824543	46	98280											
CACNA1E	777	broad.mit.edu	37	chr1	181690810	181690810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtagatgcaaaagaccCaggcccagaatttgcccttg	13	10	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181690810	A	A	181690810	1	1	100	0	1	0	0	0	0	0	0	0	2568	609	21	2		2	CACNA1E	1	181690810	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2264732	181690810	67559811	47	98281											
LAMC1	3915	broad.mit.edu	37	chr1	183099666	183099666	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaacttgagaaagcaaaAgtcgctgctgccaatgtggt	12	7	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183099666	C	C	183099666	3	2	100	1	0	0	0	0	1	0	0	0	8686	69	3	5	3542	5	LAMC1	1	183099666	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	1408856	183099666	66150955	48	98282											
KCNT2	343450	broad.mit.edu	37	chr1	196309547	196309547	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggacacattgctttttctCtgctggtcttggtttttaaa	8	8	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196309547	T	T	196309547	2	4	100	1	0	0	0	0	0	0	0	1	8162	912	32	4		4	KCNT2	1	196309547	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	13209881	196309547	52941074	49	98283											
ASPM	259266	broad.mit.edu	37	chr1	197091438	197091438	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgaagtattttctattaTgcaggaggaaaggagaaatt	10	4	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197091438	C	C	197091438	1	2	100	0	1	0	0	0	0	0	0	0	1060	1479	51	5		5	ASPM	1	197091438	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	781891	197091438	52159183	50	98284											
CRB1	23418	broad.mit.edu	37	chr1	197191557	197191557	+	Intron	DEL	G	-	-													tgacctatttcatcgtcctcGggctaccgtcatggtgatgg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197191557	-	-	197191557	6	5	100	0	1	1	0	1	0	0	0	0	3880	1131	39	0		0	CRB1	1	197191557	Intron	DEL	G	TCGA-38-4629-01A-02D-1265-08	100119	197191557	52059064	51	98285											
CACNA1S	779	broad.mit.edu	37	chr1	201030103	201030103	+	Intron	DEL	G	-	-													gaataatcctgttgggctttGggttccccttgagttatcac							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201030103	-	-	201030103	6	5	100	0	1	1	0	1	0	0	0	0	2573	1363	47	0		0	CACNA1S	1	201030103	Intron	DEL	G	TCGA-38-4629-01A-02D-1265-08	3838546	201030103	48220518	52	98286											
RNPEP	6051	broad.mit.edu	37	chr1	201969089	201969089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctgctgcgtcagcacatgGacatcactggagaggaaaac	11	11	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201969089	T	T	201969089	3	4	100	1	0	0	0	0	1	0	0	0	13620	1174	41	3	1172	3	RNPEP	1	201969089	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	938986	201969089	47281532	53	98287											
TRAF5	7188	broad.mit.edu	37	chr1	211534210	211534210	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgatacagtcccaaagatAagggcccagggcttaaatta	9	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211534210	T	T	211534210	1	4	100	0	1	0	0	0	0	0	0	0	16568	377	13	5		5	TRAF5	1	211534210	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	9565121	211534210	37716411	54	98288											
KCTD3	51133	broad.mit.edu	37	chr1	215781360	215781374	+	In_Frame_Del	DEL	CTGTGCAGATAATAA	-	-													tgttctctttctctgctagtCtgtgcagataataatcatgt							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	215781374	-	-	215781360	7	5	100	1	0	1	0	1	0	0	0	0	8180	927	32	0	1365	0	KCTD3	1	215781360	In_Frame_Del	DEL	CTGTGCAGATAATAA	TCGA-38-4629-01A-02D-1265-08	4247150	215781360	33469261	55	98289											
USH2A	7399	broad.mit.edu	37	chr1	216052523	216052523	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaggcctagaattttgctcTtgttttcagttaagtcattt	8	7	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216052523	C	C	216052523	1	2	100	0	1	0	0	0	0	0	0	0	17162	1624	56	5		5	USH2A	1	216052523	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	271163	216052523	33198098	56	98290											
USH2A	7399	broad.mit.edu	37	chr1	216219956	216219956	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggaagaaaagatttataGagtctaattttagtttactt	8	2	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216219956	T	T	216219956	1	4	100	0	1	0	0	0	0	0	0	0	17162	957	33	3		3	USH2A	1	216219956	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	167433	216219956	33030665	57	98291											
JMJD4	65094	broad.mit.edu	37	chr1	227920042	227920042	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttatttctggaagggccccgGagcaggaggctgcctctctt	13	11	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227920042	A	A	227920042	1	1	100	0	1	0	0	0	0	0	0	0	8021	1189	41	4		4	JMJD4	1	227920042	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	11700086	227920042	21330579	58	98292											
EDARADD	128178	broad.mit.edu	37	chr1	236572482	236572482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttaaattaaagcaaacCcgctctatttgtttgttttt	6	6	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236572482	A	A	236572482	1	1	100	0	1	0	0	0	0	0	0	0	4946	638	22	2		2	EDARADD	1	236572482	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	8652440	236572482	12678139	59	98293											
HEATR1	55127	broad.mit.edu	37	chr1	236732404	236732404	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaatgtaaaaatagacatGatattgtgtaaaactttatc	5	3	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236732404	C	C	236732404	3	2	100	1	0	0	0	0	1	0	0	0	7094	1280	45	4	2533	4	HEATR1	1	236732404	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	159922	236732404	12518217	60	98294											
RYR2	6262	broad.mit.edu	37	chr1	237756990	237756990	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaaaaaaatattggtgaAcctagctattccttttcctt	6	7	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237756990	T	T	237756990	1	4	100	0	1	0	0	0	0	0	0	0	13880	58	2	5		5	RYR2	1	237756990	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	1024586	237756990	11493631	61	98295											
RYR2	6262	broad.mit.edu	37	chr1	237802538	237802538	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccctcacgagtgatccatActacttgatgtgaaatttta	6	10	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237802538	T	T	237802538	1	4	100	0	1	0	0	0	0	0	0	0	13880	406	14	5		5	RYR2	1	237802538	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	45548	237802538	11448083	62	98296											
FMN2	56776	broad.mit.edu	37	chr1	240255649	240255649	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgttttccaacctgcggatCaggaagaatctgtccaaggg	12	9	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240255649	G	G	240255649	3	3	100	1	0	0	0	0	1	0	0	0	6008	816	29	4	242	4	FMN2	1	240255649	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	2453111	240255649	8994972	63	98297											
RGS7	6000	broad.mit.edu	37	chr1	240978134	240978134	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacattttcacaattttccActctaaatcatgatcagctg	4	10	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240978134	T	T	240978134	1	4	100	0	1	0	0	0	0	0	0	0	13419	174	6	5		5	RGS7	1	240978134	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	722485	240978134	8272487	64	98298											
WDR64	128025	broad.mit.edu	37	chr1	241943424	241943424	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatatttattgagcatttcTctgtgctagacaccataaag	6	7	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241943424	C	C	241943424	1	2	100	0	1	0	0	0	0	0	0	0	17442	1566	54	5		5	WDR64	1	241943424	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	965290	241943424	7307197	65	98299											
SMYD3	64754	broad.mit.edu	37	chr1	246093297	246093297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttaagaaacttcatagcCaagagaataaaaaacgttca	5	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246093297	A	A	246093297	1	1	100	0	1	0	0	0	0	0	0	0	14937	609	21	2		2	SMYD3	1	246093297	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	4149873	246093297	3157324	66	98300											
ZNF669	79862	broad.mit.edu	37	chr1	247267335	247267335	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggggttccgctgcccgcCccgcccggcccggccctgaa	14	20	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247267335	T	T	247267335	3	4	100	1	0	0	0	0	1	0	0	0	18203	623	22	4	1243	4	ZNF669	1	247267335	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1174038	247267335	1983286	67	98301											
OR2T8	343172	broad.mit.edu	37	chr1	248084397	248084397	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagcccaccaagtcctcttCatgatggttctgagtatcgt	9	11	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248084397	A	A	248084397	3	1	100	1	0	0	0	0	1	0	0	0	11124	825	29	3	80	3	OR2T8	1	248084397	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	817062	248084397	1166224	68	98302											
OR2L8	391190	broad.mit.edu	37	chr1	248112550	248112550	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatttgctttcctctccacTatctcatccgcatgagcaaa	4	14	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248112550	A	A	248112550	3	1	100	1	0	0	0	0	1	0	0	0	11103	1522	53	5	393	5	OR2L8	1	248112550	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	28153	248112550	1138071	69	98303											
OR2L13	284521	broad.mit.edu	37	chr1	248247398	248247399	+	Intron	INS	-	A	A													atcgatctcgtgtgcaccgcINSaatatgggaagctcagggta							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247399	A	A	248247398	6	5	100	0	1	1	1	0	0	0	0	0	11100	725	25	0		0	OR2L13	1	248247398	Intron	INS	-	TCGA-38-4629-01A-02D-1265-08	134848	248247398	1003223	70	98304											
OR2T33	391195	broad.mit.edu	37	chr1	248436673	248436673	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcccgtcagctgcacccagGagccaacacgacatggtcat	10	15	2	0	rs150467351		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436673	A	A	248436673	2	1	100	1	0	0	0	0	0	0	0	1	11118	1161	41	4		4	OR2T33	1	248436673	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	189275	248436673	813948	71	98305											
OR2T33	391195	broad.mit.edu	37	chr1	248437039	248437039	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgatactcagaaccatcatGaagaggacttggtgggctct	11	9	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248437039	T	T	248437039	3	4	100	1	0	0	0	0	1	0	0	0	11118	1281	45	3	887	3	OR2T33	1	248437039	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	366	248437039	813582	72	98306											
OR2T3	343173	broad.mit.edu	37	chr1	248637546	248637546	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcatttacagtctccgcAacaaagatgtcaccagggct	7	14	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248637546	C	C	248637546	3	2	100	1	0	0	0	0	1	0	0	0	11117	130	5	5	897	5	OR2T3	1	248637546	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	200507	248637546	613075	73	98307											
SH3BP5L	80851	broad.mit.edu	37	chr1	249118957	249118957	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcagtgctctcacctgtaTtctaggatccagttcttcct	6	13	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249118957	A	A	249118957	3	1	100	1	0	0	0	0	1	0	0	0	14361	1493	52	5	1027	5	SH3BP5L	1	249118957	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	481411	249118957	131664	74	98308											
COLEC11	78989	broad.mit.edu	37	chr2	3691245	3691245	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgccctgccggcccctgcTgcctgtggctgtgccttaag	12	17	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3691245	G	G	3691245	1	3	100	0	1	0	0	0	0	0	0	0	3743	1595	55	5		5	COLEC11	2	3691245	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08		3691245	239508128	75	98309											
GREB1	9687	broad.mit.edu	37	chr2	11716647	11716647	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccaaaggacctttaatctGttggaaaggctcaggtgagc	11	8	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11716647	A	A	11716647	3	1	100	1	0	0	0	0	1	0	0	0	6826	1377	48	4	637	4	GREB1	2	11716647	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	8025402	11716647	231482726	76	98310											
WDR35	57539	broad.mit.edu	37	chr2	20131061	20131061	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttaacttttcctcgcTgggcattcttcatctgttca	5	12	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20131061	A	A	20131061	3	1	100	1	0	0	0	0	1	0	0	0	17416	1580	55	5	595	5	WDR35	2	20131061	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	8414414	20131061	223068312	77	98311											
RHOB	388	broad.mit.edu	37	chr2	20647421	20647421	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacggcgggccaggaggaCtacgaccgcctgcggccgct	16	15	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20647421	T	T	20647421	2	4	100	1	0	0	0	0	0	0	0	1	13441	564	20	4		4	RHOB	2	20647421	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	516360	20647421	222551952	78	98312											
APOB	338	broad.mit.edu	37	chr2	21242051	21242051	+	Intron	DEL	A	-	-													aggatggtgattatgttcccAaaacaattcagcctcaaatg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21242051	-	-	21242051	6	5	100	0	1	1	0	1	0	0	0	0	787	145	5	0		0	APOB	2	21242051	Intron	DEL	A	TCGA-38-4629-01A-02D-1265-08	594630	21242051	221957322	79	98313											
APOB	338	broad.mit.edu	37	chr2	21255222	21255222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaatacagtgtggaaacTcacttgttgaccgcgtggct	12	8	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21255222	A	A	21255222	1	1	100	0	1	0	0	0	0	0	0	0	787	1566	54	5		5	APOB	2	21255222	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	13171	21255222	221944151	80	98314											
OTOF	9381	broad.mit.edu	37	chr2	26739541	26739541	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgtatatgtggctgcttgGtggtgtttacacagcgcttc	12	10	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26739541	C	C	26739541	1	2	100	0	1	0	0	0	0	0	0	0	11397	1276	44	4		4	OTOF	2	26739541	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5484319	26739541	216459832	81	98315											
TMEM214	54867	broad.mit.edu	37	chr2	27259358	27259358	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaccggtctcctcagttcCtggaactgctgaggtcccac	9	17	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27259358	G	G	27259358	3	3	100	1	0	0	0	0	1	0	0	0	16260	680	24	4	746	4	TMEM214	2	27259358	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	519817	27259358	215940015	82	98316											
AGBL5	60509	broad.mit.edu	37	chr2	27291499	27291499	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtttcctctgttccctaGggagcagttgctcactcttg	9	12	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27291499	T	T	27291499	5	4	100	1	0	0	0	0	0	0	1	0	378	1014	35	2	2353	2	AGBL5	2	27291499	Splice_Site	SNP	G	TCGA-38-4629-01A-02D-1265-08	32141	27291499	215907874	83	98317											
EMILIN1	11117	broad.mit.edu	37	chr2	27306318	27306318	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcccaagccgtgggcccctgGacggcttcagcgtgtttggg	16	13	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27306318	A	A	27306318	3	1	100	1	0	0	0	0	1	0	0	0	5135	1174	41	4	1893	4	EMILIN1	2	27306318	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	14819	27306318	215893055	84	98318											
ABCG5	64240	broad.mit.edu	37	chr2	44065024	44065024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctccacgtacaaggagaCatctttgaggatctgcctgg	11	11	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44065024	T	T	44065024	3	4	100	1	0	0	0	0	1	0	0	0	71	478	17	4	1789	4	ABCG5	2	44065024	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	16758706	44065024	199134349	85	98319											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71357871	71357871	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaaagccacgggtcggcccGagtgcttcctcacgtaagtg	13	13	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71357871	T	T	71357871	4	4	100	1	0	0	0	0	0	1	0	0	9819	1059	37	3	78	3	MPHOSPH10	2	71357871	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	27292847	71357871	171841502	86	98320											
DYSF	8291	broad.mit.edu	37	chr2	71817452	71817452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaggagagtcagagactGtgggctgagatctgggaatg	18	5	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71817452	T	T	71817452	1	4	100	0	1	0	0	0	0	0	0	0	4899	1392	48	3		3	DYSF	2	71817452	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	459581	71817452	171381921	87	98321											
POLR1A	25885	broad.mit.edu	37	chr2	86255764	86255764	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcgatcacccgcagcGcggcctcaatgccatacgtg	9	17	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86255764	A	A	86255764	3	1	100	1	0	0	0	0	1	0	0	0	12304	1087	38	4	324	4	POLR1A	2	86255764	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	14438312	86255764	156943609	88	98322											
REEP1	65055	broad.mit.edu	37	chr2	86459766	86459766	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctgagctgctagcgctctCagaagcactcctggacatct	9	14	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86459766	G	G	86459766	3	3	100	1	0	0	0	0	1	0	0	0	13312	835	29	4	97	4	REEP1	2	86459766	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	204002	86459766	156739607	89	98323											
PROM2	150696	broad.mit.edu	37	chr2	95941810	95941810	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgggggacgagtgaagacaGagcacaaggcgctggcctgt	18	9	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95941810	A	A	95941810	3	1	100	1	0	0	0	0	1	0	0	0	12662	943	33	4	437	4	PROM2	2	95941810	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	9482044	95941810	147257563	90	98324											
REV1	51455	broad.mit.edu	37	chr2	100050907	100050907	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacttgtaacagccactggtTttcctgtgaggaaaatatta	8	7	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100050907	A	A	100050907	3	1	100	1	0	0	0	0	1	0	0	0	13347	1841	64	5	2494	5	REV1	2	100050907	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	4109097	100050907	143148466	91	98325											
LONRF2	164832	broad.mit.edu	37	chr2	100906893	100906896	+	Intron	DEL	AGTT	-	-													ctctgaaagcctgaaaagacAgttaggagaaatgactgtga							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100906896	-	-	100906893	6	5	100	0	1	1	0	1	0	0	0	0	8982	203	7	0		0	LONRF2	2	100906893	Intron	DEL	AGTT	TCGA-38-4629-01A-02D-1265-08	855986	100906893	142292480	92	98326											
RGPD4	285190	broad.mit.edu	37	chr2	108487260	108487260	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcggaaccaggaaatcaaGaaaaggaaagtgaaaagcct	10	6	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108487260	T	T	108487260	4	4	100	1	0	0	0	0	0	1	0	0	13396	943	33	3	2878	3	RGPD4	2	108487260	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	7580367	108487260	134712113	93	98327											
ERCC3	2071	broad.mit.edu	37	chr2	128046549	128046549	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcattctatctaaacttcTacaagattttagatcttgct	5	8	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128046549	A	A	128046549	1	1	100	0	1	0	0	0	0	0	0	0	5256	1537	53	5		5	ERCC3	2	128046549	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	19559289	128046549	115152824	94	98328											
SMPD4	55627	broad.mit.edu	37	chr2	130912943	130912943	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgggctttcagactctccTtagccaaggtgacaagctgt	10	11	2	2	rs146406975	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130912943	C	C	130912943	1	2	100	0	1	0	0	0	0	0	0	0	14921	1624	56	5		5	SMPD4	2	130912943	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	2866394	130912943	112286430	95	98329											
FAM123C	205147	broad.mit.edu	37	chr2	131520566	131520566	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgaagcctctgacttcacCaggttctgggacagtgtgaa	11	9	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131520566	T	T	131520566	2	4	100	1	0	0	0	0	0	0	0	1	5470	581	21	4		4	FAM123C	2	131520566	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	607623	131520566	111678807	96	98330											
FAM123C	205147	broad.mit.edu	37	chr2	131521626	131521626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgaggcccctggaggccaGgtcacggaggtgacactctg	15	13	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131521626	A	A	131521626	3	1	100	1	0	0	0	0	1	0	0	0	5470	1000	35	4	1983	4	FAM123C	2	131521626	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1060	131521626	111677747	97	98331											
R3HDM1	23518	broad.mit.edu	37	chr2	136433176	136433176	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacatttctgtaatatacaAccttttaatacaggaaaaac	3	7	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136433176	G	G	136433176	1	3	100	0	1	0	0	0	0	0	0	0	12995	58	2	5		5	R3HDM1	2	136433176	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	4911550	136433176	106766197	98	98332											
LRP1B	53353	broad.mit.edu	37	chr2	141609389	141609389	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatatgaacagtgaagaagGaagaatgtattagggaagct	12	2	0	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141609389	A	A	141609389	1	1	100	0	1	0	0	0	0	0	0	0	9042	1189	41	4		4	LRP1B	2	141609389	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5176213	141609389	101589984	99	98333											
SCN2A	6326	broad.mit.edu	37	chr2	166245809	166245810	+	Missense_Mutation	DNP	AG	TT	TT													ctggatcctcctcttctcatAgcaaaacccaacaaagtcca							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	166245810	TT	TT	166245809	3	4	100	1	0	0	0	0	1	0	0	0	14029	410	15	5	5691	5	SCN2A	2	166245809	Missense_Mutation	DNP	AG	TCGA-38-4629-01A-02D-1265-08	24636420	166245809	76953564	100	98334											
RAPGEF4	11069	broad.mit.edu	37	chr2	173830169	173830169	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggtgctttgtttgccatGagacctcttctggtaggaga	13	7	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173830169	T	T	173830169	1	4	100	0	1	0	0	0	0	0	0	0	13154	1305	45	3		3	RAPGEF4	2	173830169	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	7584360	173830169	69369204	101	98335											
CDCA7	83879	broad.mit.edu	37	chr2	174223872	174223872	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctttgtaacaaaagctgTtctcttgtagtgcacttgta	7	7	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174223872	C	C	174223872	1	2	100	0	1	0	0	0	0	0	0	0	3120	1740	60	5		5	CDCA7	2	174223872	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	393703	174223872	68975501	102	98336											
OSBPL6	114880	broad.mit.edu	37	chr2	179260133	179260133	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagggtcctatttaaggttaCcttgatgtgattcatgacta	10	6	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179260133	G	G	179260133	1	3	100	0	1	0	0	0	0	0	0	0	11375	522	18	4		4	OSBPL6	2	179260133	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5036261	179260133	63939240	103	98337											
TTN	7273	broad.mit.edu	37	chr2	179501461	179501462	+	Frame_Shift_Ins	INS	-	A	A													tcatcaggaggtttctctccINSaccacttcctggccttaact							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179501462	A	A	179501461	7	5	100	1	0	1	1	0	0	0	0	0	16861	603	21	0	67252	0	TTN	2	179501461	Frame_Shift_Ins	INS	-	TCGA-38-4629-01A-02D-1265-08	241328	179501461	63697912	104	98338											
STAT1	6772	broad.mit.edu	37	chr2	191841514	191841514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtttcagaataatcacccCctcatcaggaaagactgtgc	8	11	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191841514	T	T	191841514	1	4	100	0	1	0	0	0	0	0	0	0	15382	638	22	4		4	STAT1	2	191841514	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	12340053	191841514	51357859	105	98339											
MYO1B	4430	broad.mit.edu	37	chr2	192272962	192272962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcagcattgtggaattaCccacctaatatcaccaactc	4	12	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192272962	A	A	192272962	1	1	100	0	1	0	0	0	0	0	0	0	10163	522	18	3		3	MYO1B	2	192272962	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	431448	192272962	50926411	106	98340											
SATB2	23314	broad.mit.edu	37	chr2	200173488	200173488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggggacactgacctgcaCcggctcagggggaagctgga	17	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200173488	A	A	200173488	3	1	100	1	0	0	0	0	1	0	0	0	13966	507	18	3	474	3	SATB2	2	200173488	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	7900526	200173488	43025885	107	98341											
PTH2R	5746	broad.mit.edu	37	chr2	209309305	209309305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgatgcattaaaataaCtgttttggcctctcaacagt	6	7	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209309305	A	A	209309305	1	1	100	0	1	0	0	0	0	0	0	0	12866	580	20	3		3	PTH2R	2	209309305	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	9135817	209309305	33890068	108	98342											
SPAG16	79582	broad.mit.edu	37	chr2	214794784	214794784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaggacacagccgcgcaGtgtggtcctgcacatggcac	13	12	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214794784	T	T	214794784	3	4	100	1	0	0	0	0	1	0	0	0	15094	1029	36	3	1377	3	SPAG16	2	214794784	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	5485479	214794784	28404589	109	98343											
GMPPA	29926	broad.mit.edu	37	chr2	220364542	220364542	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgagatgtgtgggatttgtGaggtgttgggtccaggcaga	18	3	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220364542	A	A	220364542	1	1	100	0	1	0	0	0	0	0	0	0	6558	1305	45	4		4	GMPPA	2	220364542	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5569758	220364542	22834831	110	98344											
GMPPA	29926	broad.mit.edu	37	chr2	220371440	220371440	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgccgagtccggatccctGccgaggtgctcatcctgaac	12	15	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220371440	C	C	220371440	3	2	100	1	0	0	0	0	1	0	0	0	6558	1319	46	4	1229	4	GMPPA	2	220371440	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	6898	220371440	22827933	111	98345											
SP100	6672	broad.mit.edu	37	chr2	231367883	231367883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttaatatttaatattctGtactgtgagtaacaagtcag	6	5	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231367883	T	T	231367883	1	4	100	0	1	0	0	0	0	0	0	0	15074	1392	48	3		3	SP100	2	231367883	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	10996443	231367883	11831490	112	98346											
ALPI	248	broad.mit.edu	37	chr2	233323244	233323244	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atagggatcttgtgaggaccGagcccccgaacaggcaaaaa	12	10	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233323244	T	T	233323244	1	4	100	0	1	0	0	0	0	0	0	0	543	1073	37	3		3	ALPI	2	233323244	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1955361	233323244	9876129	113	98347											
FARP2	9855	broad.mit.edu	37	chr2	242418425	242418425	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgagggacacagtattgacAgctgaaaaaatgatttactc	10	6	0	4	rs113449463		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242418425	T	T	242418425	1	4	100	0	1	0	0	0	0	0	0	0	5734	203	7	5		5	FARP2	2	242418425	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	9095181	242418425	780948	114	98348											
NUP210	23225	broad.mit.edu	37	chr3	13361196	13361196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggtttctactgatagCcaggaccactcctgcctgtc	8	15	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13361196	A	A	13361196	1	1	100	0	1	0	0	0	0	0	0	0	10855	754	26	3		3	NUP210	3	13361196	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08		13361196	184661234	115	98349											
ZNF385D	79750	broad.mit.edu	37	chr3	21606300	21606300	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgctcacattataaagaaCctttttattctaagaaacaa	3	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21606300	G	G	21606300	1	3	100	0	1	0	0	0	0	0	0	0	18004	522	18	4		4	ZNF385D	3	21606300	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	8245104	21606300	176416130	116	98350											
PLCD1	5333	broad.mit.edu	37	chr3	38050062	38050062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacgtacccacaggcccCgttgtcctggaagcggccct	11	17	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38050062	A	A	38050062	3	1	100	1	0	0	0	0	1	0	0	0	12126	652	23	1	497	1	PLCD1	3	38050062	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	16443762	38050062	159972368	117	98351											
SLC22A14	9389	broad.mit.edu	37	chr3	38355521	38355521	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgccacggccggccaccTagacaccctgggaatcagcc	11	18	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38355521	A	A	38355521	1	1	100	0	1	0	0	0	0	0	0	0	14558	1537	53	5		5	SLC22A14	3	38355521	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	305459	38355521	159666909	118	98352											
SCN5A	6331	broad.mit.edu	37	chr3	38639474	38639474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactctgaggggacagccaAtgagttagtttgattctgtt	11	6	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38639474	G	G	38639474	1	3	100	0	1	0	0	0	0	0	0	0	14035	116	4	5		5	SCN5A	3	38639474	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	283953	38639474	159382956	119	98353											
SCN11A	11280	broad.mit.edu	37	chr3	38967098	38967098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagctcagcctgaggcctGtgacctccaaggtgaaatcg	12	11	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38967098	T	T	38967098	1	4	100	0	1	0	0	0	0	0	0	0	14026	1392	48	3		3	SCN11A	3	38967098	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	327624	38967098	159055332	120	98354											
ULK4	54986	broad.mit.edu	37	chr3	41504779	41504779	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaaagaaaaaaacctcatCattaagtacacaaatgtgtc	6	7	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41504779	A	A	41504779	1	1	100	0	1	0	0	0	0	0	0	0	17104	841	29	3		3	ULK4	3	41504779	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2537681	41504779	156517651	121	98355											
NCKIPSD	51517	broad.mit.edu	37	chr3	48719041	48719041	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggagggagggggctggacTtgggacacggtggtgtgggt	23	4	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48719041	C	C	48719041	2	2	100	1	0	0	0	0	0	0	0	1	10320	1606	56	5		5	NCKIPSD	3	48719041	Silent	SNP	T	TCGA-38-4629-01A-02D-1265-08	7214262	48719041	149303389	122	98356											
USP4	7375	broad.mit.edu	37	chr3	49329950	49329950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcatactcaccttcacaGctgttcctggagccattgca	9	13	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49329950	T	T	49329950	3	4	100	1	0	0	0	0	1	0	0	0	17198	962	34	3	958	3	USP4	3	49329950	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	610909	49329950	148692480	123	98357											
BSN	8927	broad.mit.edu	37	chr3	49692179	49692179	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttccttgctactgccacCaccgtgagcatcaccatggc	7	17	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49692179	G	G	49692179	2	3	100	1	0	0	0	0	0	0	0	1	1539	581	21	4		4	BSN	3	49692179	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	362229	49692179	148330251	124	98358											
GNAT1	2779	broad.mit.edu	37	chr3	50231851	50231851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagccagctgagcgggaaGccccgcgtgcccgggagccc	17	15	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50231851	T	T	50231851	1	4	100	0	1	0	0	0	0	0	0	0	6575	986	34	3		3	GNAT1	3	50231851	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	539672	50231851	147790579	125	98359											
DNAH1	25981	broad.mit.edu	37	chr3	52426820	52426820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccttctgctctttgaccCctccccccacccactacacc	2	23	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52426820	A	A	52426820	1	1	100	0	1	0	0	0	0	0	0	0	4637	638	22	2		2	DNAH1	3	52426820	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2194969	52426820	145595610	126	98360											
PBRM1	55193	broad.mit.edu	37	chr3	52651531	52651531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattgaataagattttcattCgctgctttcttatgttcttt	5	7	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52651531	A	A	52651531	3	1	100	1	0	0	0	0	1	0	0	0	11585	884	31	3	3403	3	PBRM1	3	52651531	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	224711	52651531	145370899	127	98361											
CACNA1D	776	broad.mit.edu	37	chr3	53821131	53821131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccaaatgtggactagcCatttctgggccacaaggtaa	9	12	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53821131	A	A	53821131	1	1	100	0	1	0	0	0	0	0	0	0	2567	609	21	2		2	CACNA1D	3	53821131	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1169600	53821131	144201299	128	98362											
PRICKLE2	166336	broad.mit.edu	37	chr3	64142763	64142763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttcttcagtgcagaaaGccagaagaccatgtgttggc	12	9	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64142763	T	T	64142763	1	4	100	0	1	0	0	0	0	0	0	0	12593	986	34	3		3	PRICKLE2	3	64142763	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	10321632	64142763	133879667	129	98363											
ROBO1	6091	broad.mit.edu	37	chr3	79638902	79638902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttgatttgcaacacacaCaataaaaagtgaatttaaag	5	6	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79638902	A	A	79638902	1	1	100	0	1	0	0	0	0	0	0	0	13624	493	17	3		3	ROBO1	3	79638902	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	15496139	79638902	118383528	130	98364											
PROS1	5627	broad.mit.edu	37	chr3	93593251	93593251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcactgaatggaacatcTgtaaaaggaaaatattagaa	10	4	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93593251	A	A	93593251	1	1	100	0	1	0	0	0	0	0	0	0	12664	1594	55	5		5	PROS1	3	93593251	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	13954349	93593251	104429179	131	98365											
SENP7	57337	broad.mit.edu	37	chr3	101080669	101080669	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cataatactggaaatgttctCcatgacaggattatatgggc	9	7	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101080669	A	A	101080669	4	1	100	1	0	0	0	0	0	1	0	0	14164	864	30	3	1695	3	SENP7	3	101080669	Nonsense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	7487418	101080669	96941761	132	98366											
DZIP3	9666	broad.mit.edu	37	chr3	108353817	108353817	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtatccaggtgaaaatgatCaggtattatattcgttctta	8	5	2	2	rs151046961	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108353817	T	T	108353817	4	4	100	1	0	0	0	0	0	1	0	0	4905	827	29	4	950	4	DZIP3	3	108353817	Nonsense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	7273148	108353817	89668613	133	98367											
SIDT1	54847	broad.mit.edu	37	chr3	113303643	113303643	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttggctccagaatgcattgAagagattcctgtgtcagaaa	11	7	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113303643	G	G	113303643	1	3	100	0	1	0	0	0	0	0	0	0	14415	261	9	5		5	SIDT1	3	113303643	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	4949826	113303643	84718787	134	98368											
KPNA1	3836	broad.mit.edu	37	chr3	122152480	122152480	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataataatttttctttaactTacaatatgctgcctgattgg	5	6	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122152480	G	G	122152480	1	3	100	0	1	0	0	0	0	0	0	0	8500	1769	61	5		5	KPNA1	3	122152480	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	8848837	122152480	75869950	135	98369											
KALRN	8997	broad.mit.edu	37	chr3	124436269	124436269	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctgctgggcgcagtggctCacgcctgaaatcccagcact	11	15	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124436269	T	T	124436269	1	4	100	0	1	0	0	0	0	0	0	0	8045	841	29	4		4	KALRN	3	124436269	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2283789	124436269	73586161	136	98370											
EPHB1	2047	broad.mit.edu	37	chr3	134514683	134514683	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggagcctcggccgctgccGagcgcggggcttgggcggca	20	13	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134514683	T	T	134514683	1	4	100	0	1	0	0	0	0	0	0	0	5216	1073	37	3		3	EPHB1	3	134514683	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	10078414	134514683	63507747	137	98371											
VEPH1	79674	broad.mit.edu	37	chr3	157131778	157131778	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaactgttcaaagccacTggctcatagactgctatctc	7	11	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157131778	A	A	157131778	2	1	100	1	0	0	0	0	0	0	0	1	17281	1567	55	5		5	VEPH1	3	157131778	Silent	SNP	T	TCGA-38-4629-01A-02D-1265-08	22617095	157131778	40890652	138	98372											
PEX5L	51555	broad.mit.edu	37	chr3	179597586	179597586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaaagaagctatgtcctGtccagtttccaccatggaat	7	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179597586	T	T	179597586	1	4	100	0	1	0	0	0	0	0	0	0	11844	1392	48	3		3	PEX5L	3	179597586	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	22465808	179597586	18424844	139	98373											
VPS8	23355	broad.mit.edu	37	chr3	184648228	184648228	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaatcttgagtgagtgaatGaataaattatattgtcttgt	8	2	2	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184648228	A	A	184648228	1	1	100	0	1	0	0	0	0	0	0	0	17345	1305	45	4		4	VPS8	3	184648228	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5050642	184648228	13374202	140	98374											
ATP13A3	79572	broad.mit.edu	37	chr3	194182842	194182842	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagataaagtcttcacacatCaccagtaaattagaacagct	6	9	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194182842	A	A	194182842	1	1	100	0	1	0	0	0	0	0	0	0	1129	841	29	3		3	ATP13A3	3	194182842	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	9534614	194182842	3839588	141	98375											
PCYT1A	5130	broad.mit.edu	37	chr3	195969348	195969348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgaatttctaatgtacaCattttcctctgtaaagcagc	6	8	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195969348	A	A	195969348	1	1	100	0	1	0	0	0	0	0	0	0	11704	493	17	3		3	PCYT1A	3	195969348	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1786506	195969348	2053082	142	98376											
CTBP1	1487	broad.mit.edu	37	chr4	1207166	1207166	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaccacgggccctgagctgGcagaacatgggcctggctgc	15	14	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1207166	C	C	1207166	1	2	100	0	1	0	0	0	0	0	0	0	4031	1218	42	4		4	CTBP1	4	1207166	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08		1207166	189947110	143	98377											
SLBP	7884	broad.mit.edu	37	chr4	1695555	1695555	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtaatgcacagcaaggtgTacacttcacgtgcaactgag	10	9	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1695555	A	A	1695555	1	1	100	0	1	0	0	0	0	0	0	0	14485	1653	57	5		5	SLBP	4	1695555	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	488389	1695555	189458721	144	98378											
RGS12	6002	broad.mit.edu	37	chr4	3388075	3388075	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccccttgtgttcctcagatgGacttttcgtttcctggagtt	9	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3388075	C	C	3388075	1	2	100	0	1	0	0	0	0	0	0	0	13404	1189	41	4		4	RGS12	4	3388075	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1692520	3388075	187766201	145	98379											
EVC2	132884	broad.mit.edu	37	chr4	5564436	5564436	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaccgagtccctgcaagttGgcatgcgctacggggtctgt	13	11	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5564436	A	A	5564436	1	1	100	0	1	0	0	0	0	0	0	0	5328	1363	47	4		4	EVC2	4	5564436	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	2176361	5564436	185589840	146	98380											
GBA3	57733	broad.mit.edu	37	chr4	22729380	22729380	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactcagcggtcgtaatctgTcataatcctcttgccctgca	7	13	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22729380	A	A	22729380	1	1	100	0	1	0	0	0	0	0	0	0	6330	1682	58	5		5	GBA3	4	22729380	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	17164944	22729380	168424896	147	98381											
PCDH7	5099	broad.mit.edu	37	chr4	30725202	30725202	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggctgtggatgggggagatCctcccagatctgccacagct	14	11	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30725202	T	T	30725202	3	4	100	1	0	0	0	0	1	0	0	0	11610	855	30	4	2160	4	PCDH7	4	30725202	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	7995822	30725202	160429074	148	98382											
SPATA18	132671	broad.mit.edu	37	chr4	52938325	52938325	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtgcactccaaggaaggtCagacaaactctcaaagatct	8	10	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52938325	A	A	52938325	1	1	100	0	1	0	0	0	0	0	0	0	15119	841	29	3		3	SPATA18	4	52938325	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	22213123	52938325	138215951	149	98383											
FIP1L1	81608	broad.mit.edu	37	chr4	54294193	54294193	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaactgtgctctaattttaGgtcctttctgaaagatctgc	7	8	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54294193	T	T	54294193	5	4	100	1	0	0	0	0	0	0	1	0	5953	1014	35	2	1067	2	FIP1L1	4	54294193	Splice_Site	SNP	G	TCGA-38-4629-01A-02D-1265-08	1355868	54294193	136860083	150	98384											
KDR	3791	broad.mit.edu	37	chr4	55980531	55980531	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatgcaactttaaaacatgCcacattgtttttccctgcag	5	10	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55980531	G	G	55980531	1	3	100	0	1	0	0	0	0	0	0	0	8209	754	26	4		4	KDR	4	55980531	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1686338	55980531	135173745	151	98385											
POLR2B	5431	broad.mit.edu	37	chr4	57873091	57873091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacacggatcatatctgatGgcctaaaatactctttagct	6	9	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57873091	T	T	57873091	3	4	100	1	0	0	0	0	1	0	0	0	12310	1348	47	2	1365	2	POLR2B	4	57873091	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1892560	57873091	133281185	152	98386											
LPHN3	23284	broad.mit.edu	37	chr4	62758579	62758579	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgtcccaaatcccagctctCgaagagagctgtgaggctgt	11	12	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62758579	T	T	62758579	2	4	100	1	0	0	0	0	0	0	0	1	9004	871	31	4		4	LPHN3	4	62758579	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	4885488	62758579	128395697	153	98387											
UGT2B11	10720	broad.mit.edu	37	chr4	70066085	70066085	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaatcttgcataacaatCttttctttcttgctggaata	5	7	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70066085	A	A	70066085	1	1	100	0	1	0	0	0	0	0	0	0	17083	928	32	3		3	UGT2B11	4	70066085	3'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	7307506	70066085	121088191	154	98388											
COX18	285521	broad.mit.edu	37	chr4	73931122	73931122	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcctcatattctttagaTaagtgagcctagattgaggt	9	8	2	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73931122	A	A	73931122	3	1	100	1	0	0	0	0	1	0	0	0	3799	1406	49	5	574	5	COX18	4	73931122	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	3865037	73931122	117223154	155	98389											
FRAS1	80144	broad.mit.edu	37	chr4	79103289	79103289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcttcccacaagatggCcgggccaagatggaagcagg	13	12	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79103289	A	A	79103289	1	1	100	0	1	0	0	0	0	0	0	0	6102	754	26	3		3	FRAS1	4	79103289	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5172167	79103289	112050987	156	98390											
SEC31A	22872	broad.mit.edu	37	chr4	83774606	83774606	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caataaatgcatataattatCcagcaaaagaagttcttgaa	5	6	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83774606	A	A	83774606	1	1	100	0	1	0	0	0	0	0	0	0	14111	870	30	3		3	SEC31A	4	83774606	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	4671317	83774606	107379670	157	98391											
HELQ	113510	broad.mit.edu	37	chr4	84353495	84353495	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttaatttcattatatatTtgtgatattaaatttaatga	3	2	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84353495	G	G	84353495	1	3	100	0	1	0	0	0	0	0	0	0	7114	1856	64	5		5	HELQ	4	84353495	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	578889	84353495	106800781	158	98392											
AFF1	4299	broad.mit.edu	37	chr4	88027134	88027134	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacagtaaaaggaaagtacCtgtttaatattttggaagct	8	5	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88027134	G	G	88027134	1	3	100	0	1	0	0	0	0	0	0	0	356	696	24	4		4	AFF1	4	88027134	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3673639	88027134	103127142	159	98393											
HERC5	51191	broad.mit.edu	37	chr4	89414140	89414140	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagagccctggaagtgatgTattatttgctctgtttcctc	9	8	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89414140	C	C	89414140	1	2	100	0	1	0	0	0	0	0	0	0	7128	1653	57	5		5	HERC5	4	89414140	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	1387006	89414140	101740136	160	98394											
DNAJB14	79982	broad.mit.edu	37	chr4	100851498	100851498	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacacccagagttcaattcCttgatgtctattcttctaat	4	11	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100851498	G	G	100851498	1	3	100	0	1	0	0	0	0	0	0	0	4659	696	24	4		4	DNAJB14	4	100851498	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	11437358	100851498	90302778	161	98395											
INTS12	57117	broad.mit.edu	37	chr4	106621161	106621161	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagttcacagtagcagccAttgcaaacgcctgaaggaaa	9	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106621161	G	G	106621161	3	3	100	1	0	0	0	0	1	0	0	0	7847	217	8	5	1410	5	INTS12	4	106621161	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	5769663	106621161	84533115	162	98396											
GAR1	54433	broad.mit.edu	37	chr4	110739126	110739126	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatccctgtgaagatgaCatagtttgtaaatgtaccac	8	9	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110739126	G	G	110739126	3	3	100	1	0	0	0	0	1	0	0	0	6302	477	17	4	255	4	GAR1	4	110739126	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4117965	110739126	80415150	163	98397											
PITX2	5308	broad.mit.edu	37	chr4	111539234	111539234	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtctttcaagggcggagTtgccccatccggcaaggtcc	12	14	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111539234	A	A	111539234	1	1	100	0	1	0	0	0	0	0	0	0	12050	1740	60	5		5	PITX2	4	111539234	3'UTR	SNP	T	TCGA-38-4629-01A-02D-1265-08	800108	111539234	79615042	164	98398											
ANK2	287	broad.mit.edu	37	chr4	114278296	114278296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacaagcagattgccccaGtgaaagcttttcatcttcat	6	12	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114278296	T	T	114278296	3	4	100	1	0	0	0	0	1	0	0	0	621	1029	36	3	8737	3	ANK2	4	114278296	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2739062	114278296	76875980	165	98399											
ANK2	287	broad.mit.edu	37	chr4	114279468	114279468	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccccaccgtgcaaacgggtGatatacctcctctctctggt	8	15	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114279468	C	C	114279468	3	2	100	1	0	0	0	0	1	0	0	0	621	1290	45	4	9909	4	ANK2	4	114279468	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1172	114279468	76874808	166	98400											
NDST4	64579	broad.mit.edu	37	chr4	115998178	115998178	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgaaaacttctccgaagtttCacaataagattcatttttta	4	8	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115998178	T	T	115998178	2	4	100	1	0	0	0	0	0	0	0	1	10353	813	29	4		4	NDST4	4	115998178	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	1718710	115998178	75156098	167	98401											
C4orf31	79625	broad.mit.edu	37	chr4	121961148	121961148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttccactccaaaggcgCatcacagggcgtcactgtga	10	14	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121961148	A	A	121961148	3	1	100	1	0	0	0	0	1	0	0	0	2284	710	25	3	1464	3	C4orf31	4	121961148	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	5962970	121961148	69193128	168	98402											
FAT4	79633	broad.mit.edu	37	chr4	126373678	126373678	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgagagtcttccagtcaTcatcgtggcaaatgaacctc	9	12	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126373678	A	A	126373678	3	1	100	1	0	0	0	0	1	0	0	0	5749	1435	50	5	11541	5	FAT4	4	126373678	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	4412530	126373678	64780598	169	98403											
PCDH10	57575	broad.mit.edu	37	chr4	134073342	134073342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctggtggatggcgccGtggagccccagggcgggggc	20	11	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134073342	C	C	134073342	3	2	100	1	0	0	0	0	1	0	0	0	11601	1145	40	4	2049	4	PCDH10	4	134073342	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	7699664	134073342	57080934	170	98404											
RNF150	57484	broad.mit.edu	37	chr4	142053706	142053706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaccacctccccgcggGcgtcctgcttgggcgagtgc	13	17	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142053706	T	T	142053706	3	4	100	1	0	0	0	0	1	0	0	0	13562	1203	42	3	1087	3	RNF150	4	142053706	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	7980364	142053706	49100570	171	98405											
OTUD4	54726	broad.mit.edu	37	chr4	146076983	146076983	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttctgagtagatgatccTgacttgactgaaatgtacca	8	7	1	6			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146076983	A	A	146076983	1	1	100	0	1	0	0	0	0	0	0	0	11408	1595	55	5		5	OTUD4	4	146076983	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	4023277	146076983	45077293	172	98406											
DCHS2	54798	broad.mit.edu	37	chr4	155180838	155180838	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatgcccactactttcagcTaaaacgatgagttgaacctc	6	12	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155180838	A	A	155180838	3	1	100	1	0	0	0	0	1	0	0	0	4321	1519	53	5	3491	5	DCHS2	4	155180838	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	9103855	155180838	35973438	173	98407											
GRIA2	2891	broad.mit.edu	37	chr4	158284035	158284035	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtttggcaatgctggtgGctttgattgagttctgttac	13	5	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158284035	A	A	158284035	3	1	100	1	0	0	0	0	1	0	0	0	6834	1203	42	4	2668	4	GRIA2	4	158284035	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	3103197	158284035	32870241	174	98408											
NPY5R	4889	broad.mit.edu	37	chr4	164271983	164271983	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtggaacttcaagaaacAtttggttcagcattgctgag	10	7	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164271983	T	T	164271983	2	4	100	1	0	0	0	0	0	0	0	1	10705	204	8	5		5	NPY5R	4	164271983	Silent	SNP	A	TCGA-38-4629-01A-02D-1265-08	5987948	164271983	26882293	175	98409											
TKTL2	84076	broad.mit.edu	37	chr4	164393680	164393680	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatggctcccattcggagctGatcgaatgctctagtaaaaa	9	9	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164393680	T	T	164393680	3	4	100	1	0	0	0	0	1	0	0	0	16059	1299	45	3	677	3	TKTL2	4	164393680	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	121697	164393680	26760596	176	98410											
TLL1	7092	broad.mit.edu	37	chr4	167012328	167012328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaagaatgtgcttatgacCacttagaagtatttgatgga	9	5	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167012328	A	A	167012328	3	1	100	1	0	0	0	0	1	0	0	0	16068	594	21	2	2565	2	TLL1	4	167012328	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	2618648	167012328	24141948	177	98411											
SPOCK3	50859	broad.mit.edu	37	chr4	167658520	167658520	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattctacagtctttgcataGagtaagtcctcattaaatgc	6	8	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167658520	C	C	167658520	1	2	100	0	1	0	0	0	0	0	0	0	15199	957	33	4		4	SPOCK3	4	167658520	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	646192	167658520	23495756	178	98412											
CLCN3	1182	broad.mit.edu	37	chr4	170610353	170610353	+	Frame_Shift_Del	DEL	G	-	-													atgtccacagtggaaaacatGggcagaattaatcataggtc							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170610353	-	-	170610353	7	5	100	1	0	1	0	1	0	0	0	0	3495	1357	47	0	592	0	CLCN3	4	170610353	Frame_Shift_Del	DEL	G	TCGA-38-4629-01A-02D-1265-08	2951833	170610353	20543923	179	98413											
WDR17	116966	broad.mit.edu	37	chr4	177098356	177098356	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaaggtatttgatgttAtagacaaacttgttggaagt	11	3	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177098356	G	G	177098356	1	3	100	0	1	0	0	0	0	0	0	0	17404	464	16	5		5	WDR17	4	177098356	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	6488003	177098356	14055920	180	98414											
VEGFC	7424	broad.mit.edu	37	chr4	177650634	177650634	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagaaccaggctggcaacTtctactggtttgatatataa	8	7	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177650634	C	C	177650634	1	2	100	0	1	0	0	0	0	0	0	0	17279	1624	56	5		5	VEGFC	4	177650634	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	552278	177650634	13503642	181	98415											
ENPP6	133121	broad.mit.edu	37	chr4	185038299	185038299	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctatctcctcagttctgtgTttaatcttctactattttgc	5	10	5	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185038299	C	C	185038299	1	2	100	0	1	0	0	0	0	0	0	0	5176	1740	60	5		5	ENPP6	4	185038299	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	7387665	185038299	6115977	182	98416											
DNAH5	1767	broad.mit.edu	37	chr5	13829602	13829602	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgcctaagtgcataagaCctccaggatgacacacctgc	8	13	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13829602	T	T	13829602	1	4	100	0	1	0	0	0	0	0	0	0	4644	522	18	4		4	DNAH5	5	13829602	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08		13829602	167085658	183	98417											
CDH6	1004	broad.mit.edu	37	chr5	31305419	31305419	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtggaggatgtagatgagCcacctgtcttcagcaaactg	13	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31305419	G	G	31305419	3	3	100	1	0	0	0	0	1	0	0	0	3144	739	26	4	1160	4	CDH6	5	31305419	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	17475817	31305419	149609841	184	98418											
RNASEN	29102	broad.mit.edu	37	chr5	31401639	31401639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacttccgttcgatgaacCgcttctgatgggccatctgg	11	11	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31401639	A	A	31401639	3	1	100	1	0	0	0	0	1	0	0	0	13528	652	23	1	103	1	RNASEN	5	31401639	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	96220	31401639	149513621	185	98419											
RNASEN	29102	broad.mit.edu	37	chr5	31421442	31421442	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactctgtggctaccagttgCattatggagtcacctaggaa	10	9	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31421442	T	T	31421442	3	4	100	1	0	0	0	0	1	0	0	0	13528	710	25	4	690	4	RNASEN	5	31421442	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	19803	31421442	149493818	186	98420											
RNASEN	29102	broad.mit.edu	37	chr5	31529239	31529239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaaagaataaaacagaCataaacatgtttcccaaact	4	8	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31529239	A	A	31529239	1	1	100	0	1	0	0	0	0	0	0	0	13528	493	17	3		3	RNASEN	5	31529239	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	107797	31529239	149386021	187	98421											
PDZD2	23037	broad.mit.edu	37	chr5	31908632	31908632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccgctgaaggccccgaGggcgagggcacggaaagcac	16	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31908632	T	T	31908632	1	4	100	0	1	0	0	0	0	0	0	0	11795	1015	35	2		2	PDZD2	5	31908632	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	379393	31908632	149006628	188	98422											
BRIX1	55299	broad.mit.edu	37	chr5	34922317	34922317	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctatactttgcttccTttaggtttgtgaaatgaaga	7	6	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34922317	G	G	34922317	1	3	100	0	1	0	0	0	0	0	0	0	1524	1624	56	5		5	BRIX1	5	34922317	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	3013685	34922317	145992943	189	98423											
UGT3A1	133688	broad.mit.edu	37	chr5	35954589	35954589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgacttgtacctgttggcGgagacagagagggtgtgtta	16	7	0	2	rs117185659	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35954589	T	T	35954589	1	4	100	0	1	0	0	0	0	0	0	0	17089	1131	39	1		1	UGT3A1	5	35954589	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1032272	35954589	144960671	190	98424											
C5orf42	65250	broad.mit.edu	37	chr5	37107805	37107805	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgctgaggatgctgccagTgctctcagacacgctgtcca	11	13	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37107805	G	G	37107805	3	3	100	1	0	0	0	0	1	0	0	0	2324	1696	59	5	104	5	C5orf42	5	37107805	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	1153216	37107805	143807455	191	98425											
C5orf42	65250	broad.mit.edu	37	chr5	37183222	37183222	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctagtgtcatcttgtatTttgtaaattgacctttgttt	6	6	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37183222	A	A	37183222	3	1	100	1	0	0	0	0	1	0	0	0	2324	1838	64	5	4640	5	C5orf42	5	37183222	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	75417	37183222	143732038	192	98426											
C9	735	broad.mit.edu	37	chr5	39308254	39308254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggacagacaattaagagGgctcattgcaagagggcagt	14	6	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39308254	T	T	39308254	1	4	100	0	1	0	0	0	0	0	0	0	2469	1247	43	2		2	C9	5	39308254	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2125032	39308254	141607006	193	98427											
C9	735	broad.mit.edu	37	chr5	39331766	39331766	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaacaatgtgttttcctccGaggagacttacttcatagat	8	8	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39331766	T	T	39331766	1	4	100	0	1	0	0	0	0	0	0	0	2469	1073	37	3		3	C9	5	39331766	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	23512	39331766	141583494	194	98428											
HEATR7B2	133558	broad.mit.edu	37	chr5	41004585	41004585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcgagctaggtgatacaGgcctctgatgatagattcta	12	7	2	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41004585	T	T	41004585	3	4	100	1	0	0	0	0	1	0	0	0	7102	991	35	2	724	2	HEATR7B2	5	41004585	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1672819	41004585	139910675	195	98429											
C6	729	broad.mit.edu	37	chr5	41186284	41186284	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttatcaaggacttctcctCtgggctctcctgccagaaaa	8	12	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41186284	A	A	41186284	3	1	100	1	0	0	0	0	1	0	0	0	2338	913	32	3	2242	3	C6	5	41186284	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	181699	41186284	139728976	196	98430											
FST	10468	broad.mit.edu	37	chr5	52781061	52781061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccggatcttgcaactgtaAgtgcgatttttaaccttgct	8	10	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52781061	T	T	52781061	1	4	100	0	1	0	0	0	0	0	0	0	6136	87	3	5		5	FST	5	52781061	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	11594777	52781061	128134199	197	98431											
IL31RA	133396	broad.mit.edu	37	chr5	55210621	55210621	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttgactcagccatatGgtgctaatgcttcttggatt	8	9	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55210621	A	A	55210621	1	1	100	0	1	0	0	0	0	0	0	0	7761	1363	47	4		4	IL31RA	5	55210621	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2429560	55210621	125704639	198	98432											
IPO11	51194	broad.mit.edu	37	chr5	61922992	61922992	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcccacagctggccctgaaGgaccctgttcatacagtgtc	9	14	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61922992	A	A	61922992	2	1	100	1	0	0	0	0	0	0	0	1	7863	991	35	4		4	IPO11	5	61922992	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	6712371	61922992	118992268	199	98433											
MAST4	375449	broad.mit.edu	37	chr5	66406002	66406002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctaattgttattgcccGccctgctcggttattagagt	9	10	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66406002	T	T	66406002	3	4	100	1	0	0	0	0	1	0	0	0	9419	1087	38	3	1605	3	MAST4	5	66406002	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	4483010	66406002	114509258	200	98434											
RAD17	5884	broad.mit.edu	37	chr5	68689368	68689383	+	Intron	DEL	TCCTTAGAATTAAGAA	-	-													atgtttatgtttatagtattTccttagaattaagaaaagaa							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68689383	-	-	68689368	6	5	100	0	1	1	0	1	0	0	0	0	13087	1798	62	0		0	RAD17	5	68689368	Intron	DEL	TCCTTAGAATTAAGAA	TCGA-38-4629-01A-02D-1265-08	2283366	68689368	112225892	201	98435											
PCDHA1	56147	broad.mit.edu	37	chr5	140167783	140167783	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagatcagcacgactcgtgtCctggacgaggctgacttgtc	13	11	1	2	rs146713367		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140167783	G	G	140167783	2	3	100	1	0	0	0	0	0	0	0	1	11613	842	30	4		4	PCDHA1	5	140167783	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	71478415	140167783	40747477	202	98436											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712593	140712593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgcggacacactcatcaGccaggagagctgtgagaaaa	11	10	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140712593	T	T	140712593	3	4	100	1	0	0	0	0	1	0	0	0	11644	971	34	3	2344	3	PCDHGA1	5	140712593	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	544810	140712593	40202667	203	98437											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773060	140773060	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgctctagcacagtgcGcatccacgtgacagtgttgg	12	13	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140773060	A	A	140773060	3	1	100	1	0	0	0	0	1	0	0	0	11654	1087	38	4	682	4	PCDHGA8	5	140773060	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	60467	140773060	40142200	204	98438											
YIPF5	81555	broad.mit.edu	37	chr5	143541875	143541875	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaccaaatgaaacacctGtcatactcattaagtttaat	3	10	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143541875	A	A	143541875	3	1	100	1	0	0	0	0	1	0	0	0	17608	1377	48	4	263	4	YIPF5	5	143541875	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2768815	143541875	37373385	205	98439											
SPINK5	11005	broad.mit.edu	37	chr5	147491409	147491409	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaatgatcctattgagggtCtagatgggaaaatccacggc	12	7	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147491409	G	G	147491409	3	3	100	1	0	0	0	0	1	0	0	0	15180	912	32	4	1845	4	SPINK5	5	147491409	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	3949534	147491409	33423851	206	98440											
CSNK1A1	1452	broad.mit.edu	37	chr5	148929563	148929563	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagacccggattcagctggtCtcattacctgcctctaccca	7	15	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148929563	G	G	148929563	1	3	100	0	1	0	0	0	0	0	0	0	3984	928	32	4		4	CSNK1A1	5	148929563	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1438154	148929563	31985697	207	98441											
SLC26A2	1836	broad.mit.edu	37	chr5	149360432	149360434	+	In_Frame_Del	DEL	ATC	-	-													atgccattggcttttgtaatAtcatcccttccttcttccac							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149360434	-	-	149360432	7	5	100	1	0	1	0	1	0	0	0	0	14631	449	16	0	1282	0	SLC26A2	5	149360432	In_Frame_Del	DEL	ATC	TCGA-38-4629-01A-02D-1265-08	430869	149360432	31554828	208	98442											
RBM22	55696	broad.mit.edu	37	chr5	150073581	150073581	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctactagtctccagaaaatGaaatagtttcttaaaaatct	4	8	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150073581	A	A	150073581	1	1	100	0	1	0	0	0	0	0	0	0	13230	1305	45	4		4	RBM22	5	150073581	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	713149	150073581	30841679	209	98443											
NMUR2	56923	broad.mit.edu	37	chr5	151784306	151784306	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacggtctcaaagagggcCgtcttgaagtagcagcccac	11	13	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151784306	G	G	151784306	2	3	100	1	0	0	0	0	0	0	0	1	10602	639	23	4		4	NMUR2	5	151784306	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	1710725	151784306	29130954	210	98444											
ADAM19	8728	broad.mit.edu	37	chr5	156936222	156936222	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccttgtacaaccaacactCgccatggggcaaactctgag	10	13	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156936222	T	T	156936222	1	4	100	0	1	0	0	0	0	0	0	0	240	899	31	4		4	ADAM19	5	156936222	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5151916	156936222	23979038	211	98445											
GABRB2	2561	broad.mit.edu	37	chr5	160763740	160763740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactgcattatcatcgccaCgccagtaaaactcaatgtca	5	12	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160763740	A	A	160763740	3	1	100	1	0	0	0	0	1	0	0	0	6227	536	19	3	980	3	GABRB2	5	160763740	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	3827518	160763740	20151520	212	98446											
DOCK2	1794	broad.mit.edu	37	chr5	169509999	169509999	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacttagaggagacagagaGgccaatcaggtcccagagct	12	9	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169509999	T	T	169509999	1	4	100	0	1	0	0	0	0	0	0	0	4727	1015	35	2		2	DOCK2	5	169509999	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	8746259	169509999	11405261	213	98447											
FOXI1	2299	broad.mit.edu	37	chr5	169535247	169535247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcttggatggagcctcaCcagggggcaccaccagctcc	11	15	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169535247	A	A	169535247	3	1	100	1	0	0	0	0	1	0	0	0	6069	507	18	3	775	3	FOXI1	5	169535247	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	25248	169535247	11380013	214	98448											
OR2V2	285659	broad.mit.edu	37	chr5	180582227	180582228	+	Frame_Shift_Del	DEL	TG	-	-													ggcaggaagtccatctccttTgtgggctgtggcatacaaat							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180582228	-	-	180582227	7	5	100	1	0	1	0	1	0	0	0	0	11125	1809	63	0	287	0	OR2V2	5	180582227	Frame_Shift_Del	DEL	TG	TCGA-38-4629-01A-02D-1265-08	11046980	180582227	333033	215	98449											
IRF4	3662	broad.mit.edu	37	chr6	396952	396952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcctgcactcctttacCcccgtctcgatgccagtgct	6	19	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	396952	A	A	396952	1	1	100	0	1	0	0	0	0	0	0	0	7902	638	22	2		2	IRF4	6	396952	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08		396952	170718115	216	98450											
KIF13A	63971	broad.mit.edu	37	chr6	17817334	17817334	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggccgctactctgtggctgCctgtcgggggagagctgctg	18	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17817334	G	G	17817334	3	3	100	1	0	0	0	0	1	0	0	0	8344	738	26	4	3617	4	KIF13A	6	17817334	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	17420382	17817334	153297733	217	98451											
OR10C1	442194	broad.mit.edu	37	chr6	29408140	29408140	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgctgcctcctggcagcCatggcctatgaccgctatgc	12	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29408140	T	T	29408140	2	4	100	1	0	0	0	0	0	0	0	1	10992	581	21	4		4	OR10C1	6	29408140	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	11590806	29408140	141706927	218	98452											
TRIM40	135644	broad.mit.edu	37	chr6	30113788	30113788	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taggaacgactcaatcgccgGagcaggaagctcagaaagga	13	9	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30113788	A	A	30113788	2	1	100	1	0	0	0	0	0	0	0	1	16639	1161	41	4		4	TRIM40	6	30113788	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	705648	30113788	141001279	219	98453											
MICB	4277	broad.mit.edu	37	chr6	31465927	31465927	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcacgggtttcattcaGttggccactgctgagcagct	10	12	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31465927	T	T	31465927	1	4	100	0	1	0	0	0	0	0	0	0	9668	1044	36	3		3	MICB	6	31465927	5'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	1352139	31465927	139649140	220	98454											
BAT2	7916	broad.mit.edu	37	chr6	31601479	31601479	+	Intron	SNP	G	C	C													atccccagagaaggtcaagtGctggagggagcgggtggaga							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31601479	C	C	31601479	1	2	100	0	1	0	0	0	0	0	0	0	1324	1334	46	4		4	BAT2	6	31601479	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	135552	31601479	139513588	221	98455	426	2									
BAT2	7916	broad.mit.edu	37	chr6	31601483	31601483	+	Intron	SNP	G	T	T													ccagagaaggtcaagtgctgGagggagcgggtggagaacct							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31601483	T	T	31601483	1	4	100	0	1	0	0	0	0	0	0	0	1324	1189	41	3		3	BAT2	6	31601483	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	4	31601483	139513584	222	98456	426	2									
NOTCH4	4855	broad.mit.edu	37	chr6	32188210	32188210	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaggtgggcagaggcaggaGaaagagcccacccggtcaat	15	11	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32188210	T	T	32188210	3	4	100	1	0	0	0	0	1	0	0	0	10646	933	33	3	4980	3	NOTCH4	6	32188210	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	586727	32188210	138926857	223	98457											
KIFC1	3833	broad.mit.edu	37	chr6	33374668	33374668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggtgcgattaccacccGtcagccttgtcaggacccgt	10	15	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33374668	T	T	33374668	1	4	100	0	1	0	0	0	0	0	0	0	8382	1160	40	3		3	KIFC1	6	33374668	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1186458	33374668	137740399	224	98458											
C6orf125	84300	broad.mit.edu	37	chr6	33679251	33679251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcgcatgcgcagatcccccTgctagcgcgctcgttggccc	12	18	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33679251	A	A	33679251	1	1	100	0	1	0	0	0	0	0	0	0	2348	1595	55	5		5	C6orf125	6	33679251	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	304583	33679251	137435816	225	98459											
XPO5	57510	broad.mit.edu	37	chr6	43538674	43538674	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgcttgatcatttccactaCaattcgagacagagcatctt	6	11	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43538674	T	T	43538674	3	4	100	1	0	0	0	0	1	0	0	0	17574	478	17	4	3372	4	XPO5	6	43538674	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	9859423	43538674	127576393	226	98460											
PKHD1	5314	broad.mit.edu	37	chr6	51612586	51612586	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaaataaaacatcctaccTtgaagtttcatgattcctga	4	8	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51612586	A	A	51612586	3	1	100	1	0	0	0	0	1	0	0	0	12066	1623	56	5	2475	5	PKHD1	6	51612586	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	8073912	51612586	119502481	227	98461											
PKHD1	5314	broad.mit.edu	37	chr6	51655914	51655914	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttactggtgcactcactacTaccttaaccctccctaaact	3	15	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51655914	C	C	51655914	1	2	100	0	1	0	0	0	0	0	0	0	12066	1537	53	5		5	PKHD1	6	51655914	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	43328	51655914	119459153	228	98462											
PKHD1	5314	broad.mit.edu	37	chr6	51921691	51921691	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagaagtctcccaccagAtgggctgtggcatttgcagg	13	9	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51921691	T	T	51921691	3	4	100	1	0	0	0	0	1	0	0	0	12066	330	12	5	10868	5	PKHD1	6	51921691	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	265777	51921691	119193376	229	98463											
PKHD1	5314	broad.mit.edu	37	chr6	51934392	51934392	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcattttttttagtcggCtgcctgaaaggaagattggg	12	5	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51934392	T	T	51934392	1	4	100	0	1	0	0	0	0	0	0	0	12066	812	28	4		4	PKHD1	6	51934392	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	12701	51934392	119180675	230	98464											
PHF3	23469	broad.mit.edu	37	chr6	64421087	64421087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgtggttcgcttcacaCcagtaactgaagaagatcaa	9	8	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64421087	A	A	64421087	3	1	100	1	0	0	0	0	1	0	0	0	11931	507	18	3	3880	3	PHF3	6	64421087	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	12486695	64421087	106693980	231	98465											
RIMS1	22999	broad.mit.edu	37	chr6	72678738	72678738	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaaaacaccaagaaatGctgaaaaccagccccaccaa	5	15	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72678738	C	C	72678738	3	2	100	1	0	0	0	0	1	0	0	0	13478	1319	46	4	223	4	RIMS1	6	72678738	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	8257651	72678738	98436329	232	98466											
IBTK	25998	broad.mit.edu	37	chr6	82923773	82923773	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctccgcctcccgggttcaGgccattctcctgcctcagcc	9	19	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82923773	C	C	82923773	1	2	100	0	1	0	0	0	0	0	0	0	7546	1015	35	4		4	IBTK	6	82923773	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	10245035	82923773	88191294	233	98467											
CYB5R4	51167	broad.mit.edu	37	chr6	84650320	84650320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagcatttaaagataaaaGgtattaaactgatattagct	6	3	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84650320	T	T	84650320	3	4	100	1	0	0	0	0	1	0	0	0	4162	1014	35	2	1400	2	CYB5R4	6	84650320	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1726547	84650320	86464747	234	98468											
MANEA	79694	broad.mit.edu	37	chr6	96034410	96034410	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaatgctgagaccaaAtacagctacttttggagctc	7	8	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96034410	G	G	96034410	3	3	100	1	0	0	0	0	1	0	0	0	9313	101	4	5	97	5	MANEA	6	96034410	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	11384090	96034410	75080657	235	98469											
PDSS2	57107	broad.mit.edu	37	chr6	107551226	107551226	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatgtgaacccagataTggacttgaaagatatagcct	9	6	0	5			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107551226	C	C	107551226	1	2	100	0	1	0	0	0	0	0	0	0	11788	1479	51	5		5	PDSS2	6	107551226	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	11516816	107551226	63563841	236	98470											
ZUFSP	221302	broad.mit.edu	37	chr6	116968505	116968505	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcactccagcctgagcaacaGagtgagattctgtctaaaaa	9	10	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116968505	C	C	116968505	1	2	100	0	1	0	0	0	0	0	0	0	18375	957	33	4		4	ZUFSP	6	116968505	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	9417279	116968505	54146562	237	98471											
RFX6	222546	broad.mit.edu	37	chr6	117248782	117248782	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgcgttccacctctgctGactagcatgtcctttcattt	6	13	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117248782	T	T	117248782	1	4	100	0	1	0	0	0	0	0	0	0	13375	1305	45	3		3	RFX6	6	117248782	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	280277	117248782	53866285	238	98472											
SAMD3	154075	broad.mit.edu	37	chr6	130466428	130466428	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataagtaaataaataatatAaataatcgcatgaagatgta	5	2	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130466428	T	T	130466428	1	4	100	0	1	0	0	0	0	0	0	0	13931	377	13	5		5	SAMD3	6	130466428	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	13217646	130466428	40648639	239	98473											
VNN2	8875	broad.mit.edu	37	chr6	133070757	133070758	+	Intron	DNP	GC	AG	AG													tacacagcagaagttaactgGcagagtggctatagcttgtt							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	133070758	AG	AG	133070757	1	1	100	0	1	0	0	0	0	0	0	0	17310	1218	42	4		4	VNN2	6	133070757	Intron	DNP	GC	TCGA-38-4629-01A-02D-1265-08	2604329	133070757	38044310	240	98474											
GRM1	2911	broad.mit.edu	37	chr6	146720582	146720582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctggctagcttttgtgCccatttactttgggagcaac	9	10	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146720582	T	T	146720582	3	4	100	1	0	0	0	0	1	0	0	0	6862	739	26	4	2433	4	GRM1	6	146720582	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	13649825	146720582	24394485	241	98475											
ARID1B	57492	broad.mit.edu	37	chr6	157502244	157502244	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctcaagtctgcctgccGtgggcaagaagcccctggac	12	14	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157502244	C	C	157502244	3	2	100	1	0	0	0	0	1	0	0	0	916	1145	40	4	3323	4	ARID1B	6	157502244	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	10781662	157502244	13612823	242	98476											
THBS2	7058	broad.mit.edu	37	chr6	169648695	169648695	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cactgcgagtcagccaggccGacgtcctccagggagaccac	12	16	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169648695	T	T	169648695	2	4	100	1	0	0	0	0	0	0	0	1	15977	1045	37	3		3	THBS2	6	169648695	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	12146451	169648695	1466372	243	98477											
GET4	51608	broad.mit.edu	37	chr7	926184	926184	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggctttgttcttgattctTgtgtgttgctttctcttgta	10	6	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	926184	C	C	926184	1	2	100	0	1	0	0	0	0	0	0	0	6400	1827	63	5		5	GET4	7	926184	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08		926184	158212479	244	98478											
RADIL	55698	broad.mit.edu	37	chr7	4861956	4861956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaactaggttccgaggacGgcgaggagatgccacactcc	13	13	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4861956	T	T	4861956	1	4	100	0	1	0	0	0	0	0	0	0	13105	1131	39	1		1	RADIL	7	4861956	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	3935772	4861956	154276707	245	98479											
THSD7A	221981	broad.mit.edu	37	chr7	11513938	11513938	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtggctacacgatttacTgttgtcattctaaagctctt	8	9	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11513938	A	A	11513938	1	1	100	0	1	0	0	0	0	0	0	0	16002	1595	55	5		5	THSD7A	7	11513938	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	6651982	11513938	147624725	246	98480											
ABCB5	340273	broad.mit.edu	37	chr7	20782586	20782586	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcctccgtggcttatcCctcagtattgagcgaggaaa	9	11	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20782586	A	A	20782586	2	1	100	1	0	0	0	0	0	0	0	1	44	610	22	2		2	ABCB5	7	20782586	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	9268648	20782586	138356077	247	98481											
ABCB5	340273	broad.mit.edu	37	chr7	20784894	20784894	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaagaattgaatgtacagTggctccgttcccaaatagca	8	9	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20784894	C	C	20784894	3	2	100	1	0	0	0	0	1	0	0	0	44	1696	59	5	3401	5	ABCB5	7	20784894	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	2308	20784894	138353769	248	98482											
DNAH11	8701	broad.mit.edu	37	chr7	21775402	21775402	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacattggcaagtctctctGaggattacatagtatcccgt	8	10	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21775402	T	T	21775402	4	4	100	1	0	0	0	0	0	1	0	0	4639	1291	45	3	7789	3	DNAH11	7	21775402	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	990508	21775402	137363261	249	98483											
RAPGEF5	9771	broad.mit.edu	37	chr7	22349539	22349539	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatcaagtgtattttcatctGatagcttaataaaataatga	5	4	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22349539	C	C	22349539	1	2	100	0	1	0	0	0	0	0	0	0	13155	1305	45	4		4	RAPGEF5	7	22349539	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	574137	22349539	136789124	250	98484											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26235526	26235526	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atccacgtccactgccatatCcatctgttaggggccaaaaa	7	13	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26235526	G	G	26235526	3	3	100	1	0	0	0	0	1	0	0	0	7326	855	30	4	379	4	HNRNPA2B1	7	26235526	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	3885987	26235526	132903137	251	98485											
HOXA3	3200	broad.mit.edu	37	chr7	27147988	27147988	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttggagaagggcgggggcGactggggctcatacgggacg	21	8	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27147988	T	T	27147988	4	4	100	1	0	0	0	0	0	1	0	0	7360	1059	37	3	457	3	HOXA3	7	27147988	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	912462	27147988	131990675	252	98486											
HOXA5	3202	broad.mit.edu	37	chr7	27181467	27181467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatactcagggacggaagGcccctcctgccgcggccatg	13	15	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27181467	T	T	27181467	3	4	100	1	0	0	0	0	1	0	0	0	7362	1203	42	3	16	3	HOXA5	7	27181467	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	33479	27181467	131957196	253	98487											
AMPH	273	broad.mit.edu	37	chr7	38514960	38514960	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgatggtaactcttcttgTaagtcaacgttaaactcttc	6	8	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38514960	C	C	38514960	2	2	100	1	0	0	0	0	0	0	0	1	588	1635	57	5		5	AMPH	7	38514960	Silent	SNP	T	TCGA-38-4629-01A-02D-1265-08	11333493	38514960	120623703	254	98488											
CAMK2B	816	broad.mit.edu	37	chr7	44274141	44274141	+	Intron	DEL	G	-	-													tcccgtgtctctcagggcatGgggggagggggactccagag							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44274141	-	-	44274141	6	5	100	0	1	1	0	1	0	0	0	0	2626	1363	47	0		0	CAMK2B	7	44274141	Intron	DEL	G	TCGA-38-4629-01A-02D-1265-08	5759181	44274141	114864522	255	98489											
CAMK2B	816	broad.mit.edu	37	chr7	44274206	44274206	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagctgcaggctctgggctcCccggcaccacagggcccggc	14	17	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44274206	G	G	44274206	1	3	100	0	1	0	0	0	0	0	0	0	2626	638	22	4		4	CAMK2B	7	44274206	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	65	44274206	114864457	256	98490											
CAMK2B	816	broad.mit.edu	37	chr7	44286819	44286819	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacagcaggtgggttagtgCgagtggccctggggagcagc	18	8	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44286819	T	T	44286819	1	4	100	0	1	0	0	0	0	0	0	0	2626	783	27	4		4	CAMK2B	7	44286819	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	12613	44286819	114851844	257	98491											
TNS3	64759	broad.mit.edu	37	chr7	47384334	47384334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgccgcgcgcctgtgacCcgcgggtagatttcttacca	13	13	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47384334	A	A	47384334	1	1	100	0	1	0	0	0	0	0	0	0	16467	638	22	2		2	TNS3	7	47384334	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3097515	47384334	111754329	258	98492											
ABCA13	154664	broad.mit.edu	37	chr7	48335346	48335346	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagctaaattgtgaaagtcTtagcaagaatctttctagca	7	7	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48335346	G	G	48335346	3	3	100	1	0	0	0	0	1	0	0	0	31	1609	56	5	8916	5	ABCA13	7	48335346	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	951012	48335346	110803317	259	98493											
EGFR	1956	broad.mit.edu	37	chr7	55227926	55227926	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggagatgtgataatttcaGgaaacaaaaatttgtgctat	9	3	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55227926	A	A	55227926	3	1	100	1	0	0	0	0	1	0	0	0	5007	1001	35	4	1450	4	EGFR	7	55227926	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	6892580	55227926	103910737	260	98494											
ZNF479	90827	broad.mit.edu	37	chr7	57187793	57187793	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggataagctaaaggctttGccacattcttcacatttgta	8	8	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57187793	T	T	57187793	2	4	100	1	0	0	0	0	0	0	0	1	18060	1306	46	3		3	ZNF479	7	57187793	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	1959867	57187793	101950870	261	98495											
PION	54103	broad.mit.edu	37	chr7	77026761	77026761	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaaaatattttttaatttGaagtttcatacattaaataa	2	3	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77026761	C	C	77026761	1	2	100	0	1	0	0	0	0	0	0	0	12029	1305	45	4		4	PION	7	77026761	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	19838968	77026761	82111902	262	98496											
PCLO	27445	broad.mit.edu	37	chr7	82456082	82456082	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccttaaactccttccatTtatgtgaaaatacttaaaat	2	8	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82456082	A	A	82456082	1	1	100	0	1	0	0	0	0	0	0	0	11677	1856	64	5		5	PCLO	7	82456082	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	5429321	82456082	76682581	263	98497											
GRM3	2913	broad.mit.edu	37	chr7	86468104	86468104	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaattgactaatcacacgTaagacacctaaacaagtgtt	6	8	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86468104	A	A	86468104	1	1	100	0	1	0	0	0	0	0	0	0	6864	1653	57	5		5	GRM3	7	86468104	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	4012022	86468104	72670559	264	98498											
AKAP9	10142	broad.mit.edu	37	chr7	91708472	91708472	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtgatcaagaatgtgtgaAgagaaatagagaagaagaaa	13	1	1	7			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91708472	G	G	91708472	3	3	100	1	0	0	0	0	1	0	0	0	459	72	3	5	7147	5	AKAP9	7	91708472	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	5240368	91708472	67430191	265	98499											
OCM2	4951	broad.mit.edu	37	chr7	97619394	97619394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgcaatgtcatcagcaCtgagcacgtccgtgatgctc	10	13	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97619394	A	A	97619394	3	1	100	1	0	0	0	0	1	0	0	0	10917	565	20	3	322	3	OCM2	7	97619394	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	5910922	97619394	61519269	266	98500											
FBXO24	26261	broad.mit.edu	37	chr7	100190489	100190489	+	Frame_Shift_Del	DEL	T	-	-													gagccgcaggaagtggtgggTaccaccagcagccgggcctg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100190489	-	-	100190489	7	5	100	1	0	1	0	1	0	0	0	0	5792	1625	57	0	817	0	FBXO24	7	100190489	Frame_Shift_Del	DEL	T	TCGA-38-4629-01A-02D-1265-08	2571095	100190489	58948174	267	98501											
MUC17	140453	broad.mit.edu	37	chr7	100675680	100675681	+	Frame_Shift_Ins	INS	-	T	T													accagcataccaacctcaacINSttatactgaaggaagcactc							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100675681	T	T	100675680	7	5	100	1	0	1	1	0	0	0	0	0	10068	565	20	0	993	0	MUC17	7	100675680	Frame_Shift_Ins	INS	-	TCGA-38-4629-01A-02D-1265-08	485191	100675680	58462983	268	98502											
LRWD1	222229	broad.mit.edu	37	chr7	102108993	102108993	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccgacctctcaaaaccggGcactcaggggccacatccca	8	17	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102108993	A	A	102108993	1	1	100	0	1	0	0	0	0	0	0	0	9134	1218	42	4		4	LRWD1	7	102108993	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1433313	102108993	57029670	269	98503											
LAMB1	3912	broad.mit.edu	37	chr7	107600786	107600786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacactatttcccttgtgCtgcctaacacagggctaggg	11	11	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107600786	A	A	107600786	1	1	100	0	1	0	0	0	0	0	0	0	8682	812	28	3		3	LAMB1	7	107600786	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5491793	107600786	51537877	270	98504											
IQUB	154865	broad.mit.edu	37	chr7	123101441	123101441	+	Frame_Shift_Del	DEL	T	-	-													aaagcaattttagaatcatcTtcataatcagcttctgtata							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123101441	-	-	123101441	7	5	100	1	0	1	0	1	0	0	0	0	7890	1606	56	0	410	0	IQUB	7	123101441	Frame_Shift_Del	DEL	T	TCGA-38-4629-01A-02D-1265-08	15500655	123101441	36037222	271	98505											
POT1	25913	broad.mit.edu	37	chr7	124503667	124503667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagccagagctggtgatacCctgagtctcctttttatata	8	9	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124503667	A	A	124503667	3	1	100	1	0	0	0	0	1	0	0	0	12355	623	22	2	1669	2	POT1	7	124503667	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1402226	124503667	34634996	272	98506											
EXOC4	60412	broad.mit.edu	37	chr7	133059653	133059654	+	Frame_Shift_Ins	INS	-	G	G													gctgcacactctgtggtcctINSgggatacctgcaggacactg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133059654	G	G	133059653	7	5	100	1	0	1	1	0	0	0	0	0	5348	1580	55	0	1105	0	EXOC4	7	133059653	Frame_Shift_Ins	INS	-	TCGA-38-4629-01A-02D-1265-08	8555986	133059653	26079010	273	98507											
FAM180A	389558	broad.mit.edu	37	chr7	135418863	135418863	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgtaggccagggtcaGcactgtcctttcaaagtctt	12	10	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135418863	A	A	135418863	2	1	100	1	0	0	0	0	0	0	0	1	5552	962	34	4		4	FAM180A	7	135418863	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	2359210	135418863	23719800	274	98508											
PRSS1	5644	broad.mit.edu	37	chr7	142459544	142459544	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagctgtccatgagcagaGagcttgaggaacctggggaa	15	8	0	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142459544	C	C	142459544	1	2	100	0	1	0	0	0	0	0	0	0	12720	957	33	4		4	PRSS1	7	142459544	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	7040681	142459544	16679119	275	98509											
TRPV5	56302	broad.mit.edu	37	chr7	142625965	142625965	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaatactgtgtttcctgGggaggacgcagggtatcatg	15	6	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142625965	C	C	142625965	1	2	100	0	1	0	0	0	0	0	0	0	16724	1247	43	4		4	TRPV5	7	142625965	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	166421	142625965	16512698	276	98510											
KEL	3792	broad.mit.edu	37	chr7	142659146	142659146	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccctgaatgtgccatttctCgatccctctcccattacctc	4	18	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142659146	G	G	142659146	1	3	100	0	1	0	0	0	0	0	0	0	8212	899	31	4		4	KEL	7	142659146	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	33181	142659146	16479517	277	98511											
FAM115C	285966	broad.mit.edu	37	chr7	143421909	143421909	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctggacctccacctcccCtggaaatgagagggactggg	13	13	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143421909	T	T	143421909	1	4	100	0	1	0	0	0	0	0	0	0	5452	696	24	4		4	FAM115C	7	143421909	3'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	762763	143421909	15716754	278	98512											
OR2A5	393046	broad.mit.edu	37	chr7	143747363	143747363	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggctccgaaaaaccttgcTgactgagtcagcaccctgtg	10	12	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143747363	G	G	143747363	1	3	100	0	1	0	0	0	0	0	0	0	11075	1595	55	5		5	OR2A5	7	143747363	5'Flank	SNP	T	TCGA-38-4629-01A-02D-1265-08	325454	143747363	15391300	279	98513											
OR2A1	346528	broad.mit.edu	37	chr7	144015469	144015469	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccagatgctggcgaacctCctgcatccagccaagcccat	8	18	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144015469	A	A	144015469	2	1	100	1	0	0	0	0	0	0	0	1	11068	842	30	3		3	OR2A1	7	144015469	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	268106	144015469	15123194	280	98514											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259226	147259226	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaggatattttgtttgttCtagctatctacgagccttcc	8	8	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147259226	A	A	147259226	1	1	100	0	1	0	0	0	0	0	0	0	3679	928	32	3		3	CNTNAP2	7	147259226	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3243757	147259226	11879437	281	98515											
KCNH2	3757	broad.mit.edu	37	chr7	150646173	150646173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacagggagctcagccccGgggggcggcatccaggcagc	18	13	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150646173	T	T	150646173	1	4	100	0	1	0	0	0	0	0	0	0	8102	1131	39	1		1	KCNH2	7	150646173	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	3386947	150646173	8492490	282	98516											
PTPRN2	5799	broad.mit.edu	37	chr7	157361513	157361513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattttttccagggcctccCgtgaacacggcaccctacgt	9	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157361513	A	A	157361513	1	1	100	0	1	0	0	0	0	0	0	0	12916	667	23	1		1	PTPRN2	7	157361513	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	6715340	157361513	1777150	283	98517											
PTPRN2	5799	broad.mit.edu	37	chr7	157691350	157691350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgcagagcagacggcaccCcttctgttactcaccgaccc	8	17	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157691350	A	A	157691350	1	1	100	0	1	0	0	0	0	0	0	0	12916	638	22	2		2	PTPRN2	7	157691350	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	329837	157691350	1447313	284	98518											
DLGAP2	9228	broad.mit.edu	37	chr8	1626372	1626372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctgtcttccttccctccTtttgcagacacggacgtttt	6	14	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1626372	C	C	1626372	1	2	100	0	1	0	0	0	0	0	0	0	4600	1624	56	5		5	DLGAP2	8	1626372	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08		1626372	144737650	285	98519											
CSMD1	64478	broad.mit.edu	37	chr8	2820157	2820157	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccagggtctccgcagaaCacagctatggaagataacca	10	11	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2820157	A	A	2820157	2	1	100	1	0	0	0	0	0	0	0	1	3978	465	17	3		3	CSMD1	8	2820157	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	1193785	2820157	143543865	286	98520											
BLK	640	broad.mit.edu	37	chr8	11412771	11412771	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggagggccagctaggaatGatacagctcccaaggtagag	15	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11412771	A	A	11412771	1	1	100	0	1	0	0	0	0	0	0	0	1450	1305	45	4		4	BLK	8	11412771	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	8592614	11412771	134951251	287	98521											
STMN4	81551	broad.mit.edu	37	chr8	27099177	27099177	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcctgcggaatccctcCgctgcctccctcctaccctg	8	21	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27099177	T	T	27099177	1	4	100	0	1	0	0	0	0	0	0	0	15429	667	23	4		4	STMN4	8	27099177	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	15686406	27099177	119264845	288	98522											
FUT10	84750	broad.mit.edu	37	chr8	33311196	33311196	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaagcaaggtgcactggctTatacttgtaatctcagtgcg	10	8	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33311196	A	A	33311196	1	1	100	0	1	0	0	0	0	0	0	0	6162	1769	61	5		5	FUT10	8	33311196	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	6212019	33311196	113052826	289	98523											
WHSC1L1	54904	broad.mit.edu	37	chr8	38162187	38162187	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattactacagatgagaatGtaggaggatactaacatgct	10	5	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38162187	A	A	38162187	2	1	100	1	0	0	0	0	0	0	0	1	17490	1372	48	4		4	WHSC1L1	8	38162187	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	4850991	38162187	108201835	290	98524											
ADAM18	8749	broad.mit.edu	37	chr8	39525483	39525483	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caattgagaaaaatgatttaCagaacttaattttatttttc	4	4	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39525483	G	G	39525483	1	3	100	0	1	0	0	0	0	0	0	0	239	493	17	4		4	ADAM18	8	39525483	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1363296	39525483	106838539	291	98525											
ADAM2	2515	broad.mit.edu	37	chr8	39604102	39604102	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaatgaataagaaaaatGgccatctcattggtttggaa	10	4	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39604102	A	A	39604102	3	1	100	1	0	0	0	0	1	0	0	0	241	1348	47	4	152	4	ADAM2	8	39604102	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	78619	39604102	106759920	292	98526											
ANK1	286	broad.mit.edu	37	chr8	41522310	41522310	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accagccctgccggcctcctGccaggcggttaccttcagga	11	17	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41522310	C	C	41522310	1	2	100	0	1	0	0	0	0	0	0	0	620	1334	46	4		4	ANK1	8	41522310	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1918208	41522310	104841712	293	98527											
PLAT	5327	broad.mit.edu	37	chr8	42036484	42036484	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacacagcatgttgtcGgtgactgttctgttaagtaa	10	9	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42036484	T	T	42036484	2	4	100	1	0	0	0	0	0	0	0	1	12116	1103	39	1		1	PLAT	8	42036484	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	514174	42036484	104327538	294	98528											
FNTA	2339	broad.mit.edu	37	chr8	42927177	42927177	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctattttttttgtgttaCcttttctccacagtggagtg	7	7	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42927177	G	G	42927177	1	3	100	0	1	0	0	0	0	0	0	0	6035	522	18	4		4	FNTA	8	42927177	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	890693	42927177	103436845	295	98529											
ST18	9705	broad.mit.edu	37	chr8	53049136	53049136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagggcaagccggccacgCttcccgcacttacttaagct	10	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53049136	A	A	53049136	1	1	100	0	1	0	0	0	0	0	0	0	15330	812	28	3		3	ST18	8	53049136	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	10121959	53049136	93314886	296	98530											
ST18	9705	broad.mit.edu	37	chr8	53076715	53076715	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatgatttgttttggcatgTgcctcacagcacacttggca	9	9	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53076715	A	A	53076715	1	1	100	0	1	0	0	0	0	0	0	0	15330	1711	59	5		5	ST18	8	53076715	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	27579	53076715	93287307	297	98531											
TOX	9760	broad.mit.edu	37	chr8	59851894	59851894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagaaagcagtgttccatcCtggcccagcatattggagac	10	10	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59851894	A	A	59851894	3	1	100	1	0	0	0	0	1	0	0	0	16501	680	24	2	1230	2	TOX	8	59851894	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	6775179	59851894	86512128	298	98532											
CHD7	55636	broad.mit.edu	37	chr8	61749322	61749322	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaattaaaaaaaggagCaagtatgttgtcgctatgcg	9	4	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61749322	T	T	61749322	1	4	100	0	1	0	0	0	0	0	0	0	3361	725	25	4		4	CHD7	8	61749322	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1897428	61749322	84614700	299	98533											
TRIM55	84675	broad.mit.edu	37	chr8	67062332	67062332	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttataagacagcagttAtttatgacatttagaaacta	6	5	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67062332	G	G	67062332	1	3	100	0	1	0	0	0	0	0	0	0	16654	464	16	5		5	TRIM55	8	67062332	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	5313010	67062332	79301690	300	98534											
RALYL	138046	broad.mit.edu	37	chr8	85774498	85774498	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagaactctcgggcatcaaAccaactctcagtcccatttg	6	13	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85774498	T	T	85774498	1	4	100	0	1	0	0	0	0	0	0	0	13128	58	2	5		5	RALYL	8	85774498	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	18712166	85774498	60589524	301	98535											
CA13	377677	broad.mit.edu	37	chr8	86180892	86180892	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggttgatactgattccctCagaggaaactgggctttttt	10	8	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86180892	T	T	86180892	1	4	100	0	1	0	0	0	0	0	0	0	2540	841	29	4		4	CA13	8	86180892	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	406394	86180892	60183130	302	98536											
CNGB3	54714	broad.mit.edu	37	chr8	87674070	87674070	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttctcagtatcttctGgacgttccagaactgatgtc	9	9	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87674070	A	A	87674070	1	1	100	0	1	0	0	0	0	0	0	0	3633	1363	47	4		4	CNGB3	8	87674070	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1493178	87674070	58689952	303	98537											
NECAB1	64168	broad.mit.edu	37	chr8	91962079	91962079	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatctcgctacatgatctAtgagttctgggagaatagta	10	6	3	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91962079	G	G	91962079	3	3	100	1	0	0	0	0	1	0	0	0	10399	449	16	5	947	5	NECAB1	8	91962079	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	4288009	91962079	54401943	304	98538											
ESRP1	54845	broad.mit.edu	37	chr8	95677302	95677302	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgaggtatgtcctcaaaaCctgaacccctggacatcgtg	9	11	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95677302	T	T	95677302	1	4	100	0	1	0	0	0	0	0	0	0	5300	522	18	4		4	ESRP1	8	95677302	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3715223	95677302	50686720	305	98539											
KCNS2	3788	broad.mit.edu	37	chr8	99440425	99440425	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggagttctacttcgaccGcaaccctgagctcttcccct	9	16	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99440425	A	A	99440425	3	1	100	1	0	0	0	0	1	0	0	0	8159	1087	38	4	220	4	KCNS2	8	99440425	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	3763123	99440425	46923597	306	98540											
KCNS2	3788	broad.mit.edu	37	chr8	99441777	99441777	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgcatgggatatgcaccCaggtttcttttacagttttt	9	7	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99441777	A	A	99441777	1	1	100	0	1	0	0	0	0	0	0	0	8159	609	21	2		2	KCNS2	8	99441777	3'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	1352	99441777	46922245	307	98541											
UBR5	51366	broad.mit.edu	37	chr8	103354653	103354653	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccttagagggaggggtTgtcagggatccatttaaatg	14	5	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103354653	A	A	103354653	1	1	100	0	1	0	0	0	0	0	0	0	17031	1827	63	5		5	UBR5	8	103354653	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	3912876	103354653	43009369	308	98542											
EIF3H	8667	broad.mit.edu	37	chr8	117657218	117657218	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacttcaagagttcatgttAacttcttttctggaaacttc	6	8	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117657218	G	G	117657218	1	3	100	0	1	0	0	0	0	0	0	0	5060	377	13	5		5	EIF3H	8	117657218	3'UTR	SNP	A	TCGA-38-4629-01A-02D-1265-08	14302565	117657218	28706804	309	98543											
COL14A1	7373	broad.mit.edu	37	chr8	121243689	121243689	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaagttttttaatccttGgttgtgtttattccagtttt	6	4	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121243689	C	C	121243689	1	2	100	0	1	0	0	0	0	0	0	0	3703	1363	47	4		4	COL14A1	8	121243689	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	3586471	121243689	25120333	310	98544											
WDR67	93594	broad.mit.edu	37	chr8	124138862	124138862	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccttccttctgatgactGttgtagcctacaacatatgt	6	11	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124138862	A	A	124138862	3	1	100	1	0	0	0	0	1	0	0	0	17445	1377	48	4	1869	4	WDR67	8	124138862	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2895173	124138862	22225160	311	98545											
ZNF572	137209	broad.mit.edu	37	chr8	125987892	125987892	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatcattgtgatggagcaaGaaaaaaaactgttggtctca	10	5	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125987892	C	C	125987892	3	2	100	1	0	0	0	0	1	0	0	0	18131	943	33	4	12	4	ZNF572	8	125987892	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1849030	125987892	20376130	312	98546											
GSDMC	56169	broad.mit.edu	37	chr8	130774813	130774813	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctctcatttctctcaTaggagaagcagacaccccct	5	14	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130774813	A	A	130774813	1	1	100	0	1	0	0	0	0	0	0	0	6884	1421	49	5		5	GSDMC	8	130774813	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	4786921	130774813	15589209	313	98547											
COL22A1	169044	broad.mit.edu	37	chr8	139706689	139706689	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggagggtggcctggagcGagagagtgtggctgggatct	22	5	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139706689	T	T	139706689	1	4	100	0	1	0	0	0	0	0	0	0	3713	1073	37	3		3	COL22A1	8	139706689	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	8931876	139706689	6657333	314	98548											
COL22A1	169044	broad.mit.edu	37	chr8	139819813	139819813	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatatttgcagactgagaActggaggttctgggcagtta	12	7	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139819813	G	G	139819813	1	3	100	0	1	0	0	0	0	0	0	0	3713	58	2	5		5	COL22A1	8	139819813	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	113124	139819813	6544209	315	98549											
COL22A1	169044	broad.mit.edu	37	chr8	139833359	139833359	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcctggaacctgggctgcaGaaggccccctggtactcacg	14	14	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139833359	A	A	139833359	1	1	100	0	1	0	0	0	0	0	0	0	3713	957	33	4		4	COL22A1	8	139833359	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	13546	139833359	6530663	316	98550											
CYP11B2	1585	broad.mit.edu	37	chr8	143994419	143994420	+	Intron	INS	-	G	G													ccatgggaagcccaggtcgtINSaggaagtacttccttgcacc					rs149081590	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143994420	G	G	143994419	6	5	100	0	1	1	1	0	0	0	0	0	4179	1653	57	0		0	CYP11B2	8	143994419	Intron	INS	-	TCGA-38-4629-01A-02D-1265-08	4161060	143994419	2369603	317	98551											
PLEC	5339	broad.mit.edu	37	chr8	144997574	144997574	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttctgccgcagcgtctgctCggcgaatttcttatgcttct	9	13	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144997574	T	T	144997574	3	4	100	1	0	0	0	0	1	0	0	0	12147	893	31	4	7128	4	PLEC	8	144997574	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1003155	144997574	1366448	318	98552											
DOCK8	81704	broad.mit.edu	37	chr9	441749	441749	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatttttttaaggagtaatTtctgtttacatcagccatag	6	5	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	441749	G	G	441749	1	3	100	0	1	0	0	0	0	0	0	0	4733	1856	64	5		5	DOCK8	9	441749	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08		441749	140771682	319	98553											
KCNV2	169522	broad.mit.edu	37	chr9	2719074	2719074	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaacttcactaccatcccCcactcctggtggtgggccgc	8	18	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2719074	A	A	2719074	2	1	100	1	0	0	0	0	0	0	0	1	8165	610	22	2		2	KCNV2	9	2719074	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	2277325	2719074	138494357	320	98554											
GLIS3	169792	broad.mit.edu	37	chr9	3932421	3932421	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctttcttagggaacttGggtctgtgtagcgtttggta	13	6	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3932421	A	A	3932421	3	1	100	1	0	0	0	0	1	0	0	0	6511	1348	47	4	894	4	GLIS3	9	3932421	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1213347	3932421	137281010	321	98555											
INSL6	11172	broad.mit.edu	37	chr9	5185499	5185499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttctttcaccaagtacCtgccgcacagcttcctggca	6	15	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5185499	A	A	5185499	3	1	100	1	0	0	0	0	1	0	0	0	7840	681	24	2	545	2	INSL6	9	5185499	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1253078	5185499	136027932	322	98556											
GLDC	2731	broad.mit.edu	37	chr9	6602206	6602206	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctttcccagtggcatctCtacaccaagaataaggcatc	6	13	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6602206	A	A	6602206	5	1	100	1	0	0	0	0	0	0	1	0	6497	927	32	3	2076	3	GLDC	9	6602206	Splice_Site	SNP	C	TCGA-38-4629-01A-02D-1265-08	1416707	6602206	134611225	323	98557											
PTPRD	5789	broad.mit.edu	37	chr9	8518298	8518299	+	Nonsense_Mutation	DNP	CC	AA	AA													atcaatttctttgtaaagttCctcagagtttttaggtttat							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	8518299	AA	AA	8518298	4	1	100	1	0	0	0	0	0	1	0	0	12907	864	30	3	4817	3	PTPRD	9	8518298	Nonsense_Mutation	DNP	CC	TCGA-38-4629-01A-02D-1265-08	1916092	8518298	132695133	324	98558											
PTPRD	5789	broad.mit.edu	37	chr9	8518457	8518457	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggggaagataaaagacaatGactacccatcatccctataa	8	9	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8518457	A	A	8518457	1	1	100	0	1	0	0	0	0	0	0	0	12907	1305	45	4		4	PTPRD	9	8518457	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	159	8518457	132694974	325	98559											
PTPRD	5789	broad.mit.edu	37	chr9	8633141	8633141	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccctgaactctagttctgTaaagacccaaaactagagaa	6	12	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8633141	A	A	8633141	1	1	100	0	1	0	0	0	0	0	0	0	12907	1653	57	5		5	PTPRD	9	8633141	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	114684	8633141	132580290	326	98560											
KIF24	347240	broad.mit.edu	37	chr9	34242123	34242123	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacggtaagtcttttaaatcCcccgccgactcccatatttt	5	14	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34242123	T	T	34242123	1	4	100	0	1	0	0	0	0	0	0	0	8362	638	22	4		4	KIF24	9	34242123	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	25608982	34242123	106971308	327	98561											
FAM75A6	389730	broad.mit.edu	37	chr9	43626819	43626819	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccctggtgattcgtccCgaagctgcatcagatccaga	10	12	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43626819	T	T	43626819	3	4	100	1	0	0	0	0	1	0	0	0	5674	652	23	4	2167	4	FAM75A6	9	43626819	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	9384696	43626819	97586612	328	98562											
VPS13A	23230	broad.mit.edu	37	chr9	79947017	79947017	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaattcaacataccatTaggatcttaccggtattttg	6	7	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79947017	C	C	79947017	3	2	100	1	0	0	0	0	1	0	0	0	17316	1764	61	5	6265	5	VPS13A	9	79947017	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	36320198	79947017	61266414	329	98563											
FAM75C1	441452	broad.mit.edu	37	chr9	90534188	90534188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtcatcttgtctcccagCgtcatcttgtctcccagtgt	8	14	6	0	rs138369848		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90534188	A	A	90534188	3	1	100	1	0	0	0	0	1	0	0	0	5676	768	27	3	214	3	FAM75C1	9	90534188	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	10587171	90534188	50679243	330	98564											
PTPDC1	138639	broad.mit.edu	37	chr9	96860849	96860849	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaactaaaaaggaaggtAgaaatgtggcaggtattatt	13	2	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96860849	T	T	96860849	2	4	100	1	0	0	0	0	0	0	0	1	12879	407	15	5		5	PTPDC1	9	96860849	Silent	SNP	A	TCGA-38-4629-01A-02D-1265-08	6326661	96860849	44352582	331	98565											
TDRD7	23424	broad.mit.edu	37	chr9	100190940	100190940	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtggtcaggatagagactAgtagatctggagaggtaaga	15	4	2	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100190940	T	T	100190940	3	4	100	1	0	0	0	0	1	0	0	0	15857	420	15	5	195	5	TDRD7	9	100190940	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	3330091	100190940	41022491	332	98566											
CYLC2	1539	broad.mit.edu	37	chr9	105767708	105767708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgccaagaaagatgcaaaGgagattaaaaaaggtaagaa	11	3	0	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105767708	C	C	105767708	3	2	100	1	0	0	0	0	1	0	0	0	4175	991	35	4	813	4	CYLC2	9	105767708	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	5576768	105767708	35445723	333	98567											
ABCA1	19	broad.mit.edu	37	chr9	107618201	107618201	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacacacaaaaggagaaatGtttcaaaatatgtctctcgt	7	8	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107618201	C	C	107618201	1	2	100	0	1	0	0	0	0	0	0	0	28	1392	48	4		4	ABCA1	9	107618201	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1850493	107618201	33595230	334	98568											
SVEP1	79987	broad.mit.edu	37	chr9	113212226	113212226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagcctatcctcgggccAgcatttgagaatgactgact	10	11	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113212226	T	T	113212226	1	4	100	0	1	0	0	0	0	0	0	0	15538	203	7	5		5	SVEP1	9	113212226	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	5594025	113212226	28001205	335	98569											
RGS3	5998	broad.mit.edu	37	chr9	116269565	116269565	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgatcccccaccttccAggagctgccccagtgagatc	10	15	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116269565	G	G	116269565	5	3	100	1	0	0	0	0	0	0	1	0	13415	202	7	5	1275	5	RGS3	9	116269565	Splice_Site	SNP	A	TCGA-38-4629-01A-02D-1265-08	3057339	116269565	24943866	336	98570											
DFNB31	25861	broad.mit.edu	37	chr9	117168530	117168530	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccactctggccctgagcccCctcaacaagtagctggtccc	9	18	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117168530	T	T	117168530	1	4	100	0	1	0	0	0	0	0	0	0	4495	638	22	4		4	DFNB31	9	117168530	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	898965	117168530	24044901	337	98571											
DBC1	1620	broad.mit.edu	37	chr9	122075668	122075668	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcctctcattcttgcTccattctgtggagtcctata	5	12	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122075668	A	A	122075668	1	1	100	0	1	0	0	0	0	0	0	0	4280	1566	54	5		5	DBC1	9	122075668	5'UTR	SNP	T	TCGA-38-4629-01A-02D-1265-08	4907138	122075668	19137763	338	98572											
GTF3C5	9328	broad.mit.edu	37	chr9	135932240	135932240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaagaccagcgacgaGctcagggacaccatgtccct	9	17	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135932240	T	T	135932240	3	4	100	1	0	0	0	0	1	0	0	0	6941	962	34	3	1401	3	GTF3C5	9	135932240	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	13856572	135932240	5281191	339	98573											
COL5A1	1289	broad.mit.edu	37	chr9	137713784	137713784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctgacatgcacagccCaggatcagaaagcagccaca	8	16	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137713784	T	T	137713784	1	4	100	0	1	0	0	0	0	0	0	0	3728	609	21	4		4	COL5A1	9	137713784	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1781544	137713784	3499647	340	98574											
WDR37	22884	broad.mit.edu	37	chr10	1126223	1126223	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcctgttctgccatggctCtgtgtcactagggtcaaacg	11	11	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1126223	T	T	1126223	1	4	100	0	1	0	0	0	0	0	0	0	17418	928	32	4		4	WDR37	10	1126223	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08		1126223	134408524	341	98575											
WDR37	22884	broad.mit.edu	37	chr10	1171008	1171008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagggcacagtggaggaGgacgggtagagatattttac	16	5	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1171008	T	T	1171008	1	4	100	0	1	0	0	0	0	0	0	0	17418	1015	35	2		2	WDR37	10	1171008	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	44785	1171008	134363739	342	98576											
KLF6	1316	broad.mit.edu	37	chr10	3821782	3821782	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcagacctggaaaaacaCctgcaagggcaaatcagaag	11	9	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3821782	T	T	3821782	2	4	100	1	0	0	0	0	0	0	0	1	8421	521	18	4		4	KLF6	10	3821782	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	2650774	3821782	131712965	343	98577											
PFKFB3	5209	broad.mit.edu	37	chr10	6262674	6262674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggaggttcctggtgaaccGggtgcaggaccacatccaga	14	12	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6262674	T	T	6262674	3	4	100	1	0	0	0	0	1	0	0	0	11857	1116	39	1	727	1	PFKFB3	10	6262674	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2440892	6262674	129272073	344	98578											
PRKCQ	5588	broad.mit.edu	37	chr10	6527020	6527020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggatcacctatcagacCaggtaagctgataacttaaa	9	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6527020	A	A	6527020	1	1	100	0	1	0	0	0	0	0	0	0	12621	609	21	2		2	PRKCQ	10	6527020	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	264346	6527020	129007727	345	98579											
ITIH5	80760	broad.mit.edu	37	chr10	7679144	7679144	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgaagccaaggaccagctGggtgttttcaccacagatct	10	12	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7679144	T	T	7679144	1	4	100	0	1	0	0	0	0	0	0	0	7977	1363	47	2		2	ITIH5	10	7679144	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1152124	7679144	127855603	346	98580											
UPF2	26019	broad.mit.edu	37	chr10	11978664	11978664	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcttttgagatgcaaaggAatggcaacatctagttggtg	13	5	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11978664	C	C	11978664	3	2	100	1	0	0	0	0	1	0	0	0	17130	242	9	5	408	5	UPF2	10	11978664	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	4299520	11978664	123556083	347	98581											
ITGA8	8516	broad.mit.edu	37	chr10	15701091	15701091	+	Intron	DEL	C	-	-													taaacaggttacaccatttgCcatagaattggagccttttt							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15701091	-	-	15701091	6	5	100	0	1	1	0	1	0	0	0	0	7952	754	26	0		0	ITGA8	10	15701091	Intron	DEL	C	TCGA-38-4629-01A-02D-1265-08	3722427	15701091	119833656	348	98582											
PLXDC2	84898	broad.mit.edu	37	chr10	20290768	20290768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtggaagttgattcacaCgcgtacagccacaggtggaa	14	8	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20290768	A	A	20290768	3	1	100	1	0	0	0	0	1	0	0	0	12213	535	19	3	183	3	PLXDC2	10	20290768	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4589677	20290768	115243979	349	98583											
GPR158	57512	broad.mit.edu	37	chr10	25840182	25840182	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacatcttttggattcttcaGggaaatatttaatacaactg	7	6	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25840182	C	C	25840182	1	2	100	0	1	0	0	0	0	0	0	0	6728	1015	35	4		4	GPR158	10	25840182	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5549414	25840182	109694565	350	98584											
GPR158	57512	broad.mit.edu	37	chr10	25886786	25886786	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccacctccagaaaaagcGgtgctcgaagaagggcctag	11	14	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25886786	A	A	25886786	3	1	100	1	0	0	0	0	1	0	0	0	6728	1116	39	4	2273	4	GPR158	10	25886786	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	46604	25886786	109647961	351	98585											
ANKRD30A	91074	broad.mit.edu	37	chr10	37488665	37488665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttttatagatcagatgttCccttcagaatcaaaacaaaa	4	9	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37488665	A	A	37488665	3	1	100	1	0	0	0	0	1	0	0	0	658	854	30	3	2677	3	ANKRD30A	10	37488665	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	11601879	37488665	98046082	352	98586											
RBP3	5949	broad.mit.edu	37	chr10	48381910	48381910	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatggggcccttccctacaGgtggtcctgcaggcctgggc	14	14	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48381910	A	A	48381910	2	1	100	1	0	0	0	0	0	0	0	1	13265	991	35	4		4	RBP3	10	48381910	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	10893245	48381910	87152837	353	98587											
CHAT	1103	broad.mit.edu	37	chr10	50863273	50863273	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgtgactgaccacaaggcTgctgtgccagtaagtcccgc	12	14	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50863273	A	A	50863273	2	1	100	1	0	0	0	0	0	0	0	1	3344	1567	55	5		5	CHAT	10	50863273	Silent	SNP	T	TCGA-38-4629-01A-02D-1265-08	2481363	50863273	84671474	354	98588											
OGDHL	55753	broad.mit.edu	37	chr10	50964932	50964932	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggacaacagaagggggccGtggctgagcagagccagaaa	16	8	0	4	rs140510079		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50964932	T	T	50964932	2	4	100	1	0	0	0	0	0	0	0	1	10935	1144	40	3		3	OGDHL	10	50964932	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	101659	50964932	84569815	355	98589											
KIAA0913	23053	broad.mit.edu	37	chr10	75557714	75557714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggccaccagggtcctcacCgcaacctgcacctttgcgcc	11	18	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75557714	T	T	75557714	3	4	100	1	0	0	0	0	1	0	0	0	8270	652	23	4	3912	4	KIAA0913	10	75557714	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	24592782	75557714	59977033	356	98590											
POLR3A	11128	broad.mit.edu	37	chr10	79773475	79773475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaggttcatttcatcaCcatcaaagtcagcattatag	7	8	5	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79773475	A	A	79773475	3	1	100	1	0	0	0	0	1	0	0	0	12323	507	18	3	2751	3	POLR3A	10	79773475	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4215761	79773475	55761272	357	98591											
AGAP11	119385	broad.mit.edu	37	chr10	88769446	88769446	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catggctcccgtgaggaggtGaacgagacctgtggggaggg	19	8	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88769446	A	A	88769446	2	1	100	1	0	0	0	0	0	0	0	1	367	1277	45	4		4	AGAP11	10	88769446	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	8995971	88769446	46765301	358	98592											
TLL2	7093	broad.mit.edu	37	chr10	98146791	98146791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccagcgtgttcacacagcGatgctcgcacccgccgtgat	11	16	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98146791	T	T	98146791	3	4	100	1	0	0	0	0	1	0	0	0	16069	1058	37	3	1308	3	TLL2	10	98146791	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	9377345	98146791	37387956	359	98593											
SLIT1	6585	broad.mit.edu	37	chr10	98766421	98766421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccattctggcactcagtcCcctcacaggggctcttgggg	11	16	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98766421	A	A	98766421	3	1	100	1	0	0	0	0	1	0	0	0	14853	623	22	2	1230	2	SLIT1	10	98766421	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	619630	98766421	36768326	360	98594											
ABCC2	1244	broad.mit.edu	37	chr10	101604056	101604056	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccaccttataaaacttacTtctcatcttgtctccttgcc	3	14	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101604056	G	G	101604056	1	3	100	0	1	0	0	0	0	0	0	0	53	1624	56	5		5	ABCC2	10	101604056	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	2837635	101604056	33930691	361	98595											
HPS6	79803	broad.mit.edu	37	chr10	103826164	103826164	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggaggcacctgtaggcccGtgggggtctgcagccctagg	17	12	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103826164	C	C	103826164	2	2	100	1	0	0	0	0	0	0	0	1	7410	1132	40	4		4	HPS6	10	103826164	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	2222108	103826164	31708583	362	98596											
HPS6	79803	broad.mit.edu	37	chr10	103826182	103826182	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgggggtctgcagccctAggcacatttcagggcactct	13	13	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103826182	G	G	103826182	2	3	100	1	0	0	0	0	0	0	0	1	7410	407	15	5		5	HPS6	10	103826182	Silent	SNP	A	TCGA-38-4629-01A-02D-1265-08	18	103826182	31708565	363	98597											
TAF5	6877	broad.mit.edu	37	chr10	105139624	105139624	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaaaaggtaattttgactCtctttttctttcacagaatc	5	8	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105139624	T	T	105139624	1	4	100	0	1	0	0	0	0	0	0	0	15647	928	32	4		4	TAF5	10	105139624	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1313442	105139624	30395123	364	98598											
PDCD11	22984	broad.mit.edu	37	chr10	105173722	105173722	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcacttggtactttgcaGctcagccatctctctgattc	6	13	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105173722	A	A	105173722	5	1	100	1	0	0	0	0	0	0	1	0	11711	985	34	4	1219	4	PDCD11	10	105173722	Splice_Site	SNP	G	TCGA-38-4629-01A-02D-1265-08	34098	105173722	30361025	365	98599											
PDCD11	22984	broad.mit.edu	37	chr10	105204594	105204594	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacattcacttcaactcctCtttctgcctcaaaggccagc	5	15	5	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105204594	T	T	105204594	1	4	100	0	1	0	0	0	0	0	0	0	11711	928	32	4		4	PDCD11	10	105204594	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	30872	105204594	30330153	366	98600											
EMX2	2018	broad.mit.edu	37	chr10	119307833	119307833	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccctacaaaacaaaaaCaaaccgcatacacgttcacc	2	14	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119307833	T	T	119307833	1	4	100	0	1	0	0	0	0	0	0	0	5150	493	17	4		4	EMX2	10	119307833	3'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	14103239	119307833	16226914	367	98601											
RGS10	6001	broad.mit.edu	37	chr10	121287108	121287108	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattcttgtcacacaacccTgtaaggcaggcactactatt	6	12	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121287108	C	C	121287108	1	2	100	0	1	0	0	0	0	0	0	0	13402	1595	55	5		5	RGS10	10	121287108	5'Flank	SNP	T	TCGA-38-4629-01A-02D-1265-08	1979275	121287108	14247639	368	98602											
ANO9	338440	broad.mit.edu	37	chr11	431688	431688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgctctctttgggcagCgttacctgatttcatcaact	8	12	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	431688	A	A	431688	1	1	100	0	1	0	0	0	0	0	0	0	704	783	27	3		3	ANO9	11	431688	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08		431688	134574828	369	98603											
MUC2	4583	broad.mit.edu	37	chr11	1096273	1096273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcccagcccttgcaccCgaccccggccgaggggcaca	11	21	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1096273	A	A	1096273	1	1	100	0	1	0	0	0	0	0	0	0	10069	667	23	1		1	MUC2	11	1096273	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	664585	1096273	133910243	370	98604											
CTSD	1509	broad.mit.edu	37	chr11	1780047	1780047	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacaaccaggcccattcccaGacccctcctcaccctgctga	5	21	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1780047	T	T	1780047	1	4	100	0	1	0	0	0	0	0	0	0	4066	957	33	3		3	CTSD	11	1780047	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	683774	1780047	133226469	371	98605											
OR51S1	119692	broad.mit.edu	37	chr11	4869784	4869784	+	Frame_Shift_Del	DEL	G	-	-													ataggagaagaaaataagcaGggggtccaaacccatggctg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4869784	-	-	4869784	7	5	100	1	0	1	0	1	0	0	0	0	11199	991	35	0	319	0	OR51S1	11	4869784	Frame_Shift_Del	DEL	G	TCGA-38-4629-01A-02D-1265-08	3089737	4869784	130136732	372	98606											
HBE1	3046	broad.mit.edu	37	chr11	5290732	5290732	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtcacagtgcagctcactCagcttagcaaaggcgggctt	11	11	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5290732	T	T	5290732	2	4	100	1	0	0	0	0	0	0	0	1	7046	813	29	4		4	HBE1	11	5290732	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	420948	5290732	129715784	373	98607											
UBQLN3	50613	broad.mit.edu	37	chr11	5530631	5530631	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcggggtgggccttaaagCgctgagatatctcttccttc	12	10	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5530631	T	T	5530631	3	4	100	1	0	0	0	0	1	0	0	0	17024	768	27	4	1813	4	UBQLN3	11	5530631	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	239899	5530631	129475885	374	98608											
OR10A3	26496	broad.mit.edu	37	chr11	7960723	7960723	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtcataagccatcgctccCaggagaaaacattcagtccc	8	14	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7960723	T	T	7960723	2	4	100	1	0	0	0	0	0	0	0	1	10985	581	21	4		4	OR10A3	11	7960723	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	2430092	7960723	127045793	375	98609											
CTR9	9646	broad.mit.edu	37	chr11	10794644	10794644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataagaaaatttgcagtgGggtttcttttctaccatttt	7	6	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10794644	T	T	10794644	1	4	100	0	1	0	0	0	0	0	0	0	4058	1247	43	2		2	CTR9	11	10794644	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2833921	10794644	124211872	376	98610											
FAR1	84188	broad.mit.edu	37	chr11	13729762	13729762	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactaaaaatacgaaaaaaaTtagccaggcatggtggcagg	10	7	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13729762	G	G	13729762	1	3	100	0	1	0	0	0	0	0	0	0	5731	1508	52	5		5	FAR1	11	13729762	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	2935118	13729762	121276754	377	98611											
INSC	387755	broad.mit.edu	37	chr11	15200004	15200004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggttcaggtcagtgcagGctgggctgcagggaggggtg	22	6	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15200004	T	T	15200004	1	4	100	0	1	0	0	0	0	0	0	0	7834	1218	42	3		3	INSC	11	15200004	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1470242	15200004	119806512	378	98612											
INSC	387755	broad.mit.edu	37	chr11	15212428	15212428	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagctcacttgttcaatGggaatagctggctcacgagg	13	8	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15212428	A	A	15212428	1	1	100	0	1	0	0	0	0	0	0	0	7834	1363	47	4		4	INSC	11	15212428	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	12424	15212428	119794088	379	98613											
DEPDC7	91614	broad.mit.edu	37	chr11	33047270	33047270	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagcatcataaacactcttCaaacacaagtggaagtgaaa	7	9	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33047270	G	G	33047270	3	3	100	1	0	0	0	0	1	0	0	0	4484	827	29	4	195	4	DEPDC7	11	33047270	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	17834842	33047270	101959246	380	98614											
OR4C13	283092	broad.mit.edu	37	chr11	49974153	49974153	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatcccccatgtacttttTcctggcctatctctccttta	5	14	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49974153	C	C	49974153	3	2	100	1	0	0	0	0	1	0	0	0	11141	1783	62	5	181	5	OR4C13	11	49974153	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	16926883	49974153	85032363	381	98615											
TRIM48	79097	broad.mit.edu	37	chr11	55036743	55036743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccgtgctgctgcacatgCcccagcctctgaatctagcg	10	15	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55036743	A	A	55036743	3	1	100	1	0	0	0	0	1	0	0	0	16648	739	26	3	622	3	TRIM48	11	55036743	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	5062590	55036743	79969773	382	98616											
OR4S2	219431	broad.mit.edu	37	chr11	55418741	55418741	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatggcctatgatcgttAtgtggctatctgtaaacccc	9	9	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55418741	T	T	55418741	3	4	100	1	0	0	0	0	1	0	0	0	11177	449	16	5	364	5	OR4S2	11	55418741	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	381998	55418741	79587775	383	98617											
OR5L1	219437	broad.mit.edu	37	chr11	55579095	55579095	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgattgcactgattcaggtCagctctcggctccacacccc	8	15	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579095	A	A	55579095	2	1	100	1	0	0	0	0	0	0	0	1	11264	813	29	3		3	OR5L1	11	55579095	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	160354	55579095	79427421	384	98618											
OR8H2	390151	broad.mit.edu	37	chr11	55872729	55872729	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttactcacctgtcatttattGacctcagttactcaactgtc	4	12	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55872729	T	T	55872729	3	4	100	1	0	0	0	0	1	0	0	0	11332	1290	45	3	213	3	OR8H2	11	55872729	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	293634	55872729	79133787	385	98619											
OR8H2	390151	broad.mit.edu	37	chr11	55873168	55873168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttttcacaatatctgcatCctatgtgttcattctcttta	3	11	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55873168	A	A	55873168	3	1	100	1	0	0	0	0	1	0	0	0	11332	855	30	3	652	3	OR8H2	11	55873168	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	439	55873168	79133348	386	98620											
OR8H3	390152	broad.mit.edu	37	chr11	55890059	55890059	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttactcacctgtcatttattGacctcagttactcaactgtc	4	12	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890059	T	T	55890059	3	4	100	1	0	0	0	0	1	0	0	0	11333	1290	45	3	213	3	OR8H3	11	55890059	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	16891	55890059	79116457	387	98621											
PRG3	10394	broad.mit.edu	37	chr11	57145327	57145327	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaactagagaagtgacaggcTaggtcagagggcagaagttc	15	6	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57145327	C	C	57145327	1	2	100	0	1	0	0	0	0	0	0	0	12586	1537	53	5		5	PRG3	11	57145327	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	1255268	57145327	77861189	388	98622											
OR1S2	219958	broad.mit.edu	37	chr11	57971146	57971146	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcagaagggtgtgtgtaaGagcaataatattactgagga	14	3	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57971146	T	T	57971146	3	4	100	1	0	0	0	0	1	0	0	0	11067	942	33	3	472	3	OR1S2	11	57971146	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	825819	57971146	77035370	389	98623											
OR5B3	441608	broad.mit.edu	37	chr11	58169967	58169967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctacagacaattttgCcttctcaacaactttcttga	3	13	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58169967	A	A	58169967	3	1	100	1	0	0	0	0	1	0	0	0	11246	739	26	3	30	3	OR5B3	11	58169967	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	198821	58169967	76836549	390	98624											
OR5A2	219981	broad.mit.edu	37	chr11	59189984	59189984	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaatccacccacataggcgCcaaccaccatctttaaacaa	5	15	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59189984	G	G	59189984	3	3	100	1	0	0	0	0	1	0	0	0	11234	739	26	4	533	4	OR5A2	11	59189984	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1020017	59189984	75816532	391	98625											
PLAC1L	219990	broad.mit.edu	37	chr11	59812353	59812353	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatataacatgattcacccAtaagtataattgtaaacaaa	4	6	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59812353	C	C	59812353	1	2	100	0	1	0	0	0	0	0	0	0	12108	232	8	5		5	PLAC1L	11	59812353	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	622369	59812353	75194163	392	98626											
MS4A14	84689	broad.mit.edu	37	chr11	60159970	60159970	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggataccaaagttctgagaTgatgccgttgctgcttattt	11	7	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60159970	A	A	60159970	1	1	100	0	1	0	0	0	0	0	0	0	9952	1479	51	5		5	MS4A14	11	60159970	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	347617	60159970	74846546	393	98627											
CD5	921	broad.mit.edu	37	chr11	60893345	60893345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctgaccccagcaccCcagggtcccccacagtcctg	8	21	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60893345	T	T	60893345	1	4	100	0	1	0	0	0	0	0	0	0	3051	638	22	4		4	CD5	11	60893345	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	733375	60893345	74113171	394	98628											
AHNAK	79026	broad.mit.edu	37	chr11	62297219	62297219	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttttagtttcccctctggaGcttcaagattcacatctgga	7	11	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62297219	C	C	62297219	3	2	100	1	0	0	0	0	1	0	0	0	414	971	34	4	13122	4	AHNAK	11	62297219	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1403874	62297219	72709297	395	98629											
CCDC88B	283234	broad.mit.edu	37	chr11	64111949	64111949	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggttgagacaggagggcCctgagcacaagccagggcct	18	10	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64111949	T	T	64111949	3	4	100	1	0	0	0	0	1	0	0	0	2892	623	22	4	1990	4	CCDC88B	11	64111949	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1814730	64111949	70894567	396	98630											
SLC22A11	55867	broad.mit.edu	37	chr11	64337061	64337061	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctggcatctgtgagcccAggatgtcttcctgccacagg	11	15	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64337061	G	G	64337061	1	3	100	0	1	0	0	0	0	0	0	0	14555	203	7	5		5	SLC22A11	11	64337061	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	225112	64337061	70669455	397	98631											
NRXN2	9379	broad.mit.edu	37	chr11	64428366	64428366	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggagcaaaagggggcaaCgcccacagccccctgagcct	13	16	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64428366	T	T	64428366	3	4	100	1	0	0	0	0	1	0	0	0	10761	536	19	4	3419	4	NRXN2	11	64428366	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	91305	64428366	70578150	398	98632											
PYGM	5837	broad.mit.edu	37	chr11	64519396	64519396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagagtggctgccactcacGgttgtacagggtgatgacat	14	8	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64519396	T	T	64519396	3	4	100	1	0	0	0	0	1	0	0	0	12970	1130	39	1	788	1	PYGM	11	64519396	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	91030	64519396	70487120	399	98633											
ATG2A	23130	broad.mit.edu	37	chr11	64664164	64664164	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttattcccaatggcagctTctaggttgcccaagggtaaa	9	10	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64664164	A	A	64664164	1	1	100	0	1	0	0	0	0	0	0	0	1097	1798	62	5		5	ATG2A	11	64664164	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	144768	64664164	70342352	400	98634											
SPTBN2	6712	broad.mit.edu	37	chr11	66475714	66475714	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttctcctggcggatgagCtcggtgcgcagggccagctc	15	13	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66475714	T	T	66475714	2	4	100	1	0	0	0	0	0	0	0	1	15238	796	28	4		4	SPTBN2	11	66475714	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	1811550	66475714	68530802	401	98635											
SAPS3	55291	broad.mit.edu	37	chr11	68377238	68377238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgatcgtgcaccctgcGcatgctcagtcccaggatgc	12	13	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68377238	A	A	68377238	1	1	100	0	1	0	0	0	0	0	0	0	13950	1102	38	4		4	SAPS3	11	68377238	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1901524	68377238	66629278	402	98636											
C11orf30	56946	broad.mit.edu	37	chr11	76158106	76158106	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgataccttttttccctttCtgcctaggtcatagctgttt	6	11	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76158106	T	T	76158106	1	4	100	0	1	0	0	0	0	0	0	0	1648	928	32	4		4	C11orf30	11	76158106	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	7780868	76158106	58848410	403	98637											
CAPN5	726	broad.mit.edu	37	chr11	76834862	76834862	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccggcagcccagcaacctGccaggcactgtggccgtgca	13	16	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76834862	A	A	76834862	2	1	100	1	0	0	0	0	0	0	0	1	2655	1306	46	4		4	CAPN5	11	76834862	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	676756	76834862	58171654	404	98638											
MYO7A	4647	broad.mit.edu	37	chr11	76900500	76900500	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggctgtttcgccccctcCgagaagtttgtcaaggtagg	14	10	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76900500	T	T	76900500	2	4	100	1	0	0	0	0	0	0	0	1	10176	639	23	4		4	MYO7A	11	76900500	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	65638	76900500	58106016	405	98639											
CCDC81	60494	broad.mit.edu	37	chr11	86125711	86125711	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaccagaataaaacatcaaTttttatttaccagactcttg	3	9	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86125711	G	G	86125711	1	3	100	0	1	0	0	0	0	0	0	0	2883	1508	52	5		5	CCDC81	11	86125711	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	9225211	86125711	48880805	406	98640											
PDGFD	80310	broad.mit.edu	37	chr11	103814199	103814199	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttttgacttccggtcatgGtatgacctgcctcgataccg	9	13	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103814199	A	A	103814199	2	1	100	1	0	0	0	0	0	0	0	1	11754	1256	44	4		4	PDGFD	11	103814199	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	17688488	103814199	31192317	407	98641											
GRIA4	2893	broad.mit.edu	37	chr11	105732855	105732855	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcagctataggcaacttcTagaagaacttgacagaagac	9	8	2	5			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105732855	C	C	105732855	3	2	100	1	0	0	0	0	1	0	0	0	6836	1522	53	5	607	5	GRIA4	11	105732855	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	1918656	105732855	29273661	408	98642											
FAM55D	54827	broad.mit.edu	37	chr11	114441716	114441716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgactacatgttgaggtgGgtgtacattatttgtgccat	11	7	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114441716	T	T	114441716	3	4	100	1	0	0	0	0	1	0	0	0	5638	1232	43	2	59	2	FAM55D	11	114441716	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	8708861	114441716	20564800	409	98643											
TRIM29	23650	broad.mit.edu	37	chr11	119996524	119996524	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagtgactgtcccaggcccTccccctccagcaggacatga	9	17	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119996524	A	A	119996524	3	1	100	1	0	0	0	0	1	0	0	0	16627	1551	54	5	582	5	TRIM29	11	119996524	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	5554808	119996524	15009992	410	98644											
TECTA	7007	broad.mit.edu	37	chr11	121008270	121008270	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggctatgctctactgggcAgccagtgtgtcacgcggagt	15	10	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121008270	T	T	121008270	3	4	100	1	0	0	0	0	1	0	0	0	15869	188	7	5	3120	5	TECTA	11	121008270	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	1011746	121008270	13998246	411	98645											
UBASH3B	84959	broad.mit.edu	37	chr11	122680631	122680631	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggaaaggccttttggaGtgtgtctttctgtgtgttta	13	4	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122680631	T	T	122680631	1	4	100	0	1	0	0	0	0	0	0	0	16966	1044	36	3		3	UBASH3B	11	122680631	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	1672361	122680631	12325885	412	98646											
SCN3B	55800	broad.mit.edu	37	chr11	123509035	123509035	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtgaagtcctctccagctGaaagaaagagaatgaggttc	12	7	1	5			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123509035	T	T	123509035	1	4	100	0	1	0	0	0	0	0	0	0	14032	1305	45	3		3	SCN3B	11	123509035	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	828404	123509035	11497481	413	98647											
ROBO3	64221	broad.mit.edu	37	chr11	124742335	124742335	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgcttctcagtgtctccaaGaggccaacttaacatcaccg	8	14	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124742335	T	T	124742335	3	4	100	1	0	0	0	0	1	0	0	0	13626	942	33	3	1247	3	ROBO3	11	124742335	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1233300	124742335	10264181	414	98648											
VPS26B	112936	broad.mit.edu	37	chr11	134095109	134095109	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgagcacaagacggaggaCgggaagaaggagaaatattt	15	6	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134095109	T	T	134095109	2	4	100	1	0	0	0	0	0	0	0	1	17325	535	19	4		4	VPS26B	11	134095109	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	9352774	134095109	911407	415	98649											
ACAD8	27034	broad.mit.edu	37	chr11	134131236	134131236	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccacctcaatgtccggaaGcagtttggagagcctctggc	12	12	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134131236	C	C	134131236	3	2	100	1	0	0	0	0	1	0	0	0	110	962	34	4	939	4	ACAD8	11	134131236	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	36127	134131236	875280	416	98650											
GLB1L2	89944	broad.mit.edu	37	chr11	134217327	134217327	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagggtggtgccactccaGgtacaagcaaatggggtctt	13	10	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134217327	A	A	134217327	2	1	100	1	0	0	0	0	0	0	0	1	6493	1014	35	4		4	GLB1L2	11	134217327	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	86091	134217327	789189	417	98651											
KDM5A	5927	broad.mit.edu	37	chr12	422056	422056	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaaacacagtttctactcaAtgcatatcactttcgcacca	4	13	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	422056	G	G	422056	1	3	100	0	1	0	0	0	0	0	0	0	8203	116	4	5		5	KDM5A	12	422056	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08		422056	133429839	418	98652											
CACNA1C	775	broad.mit.edu	37	chr12	2666138	2666138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccggatctccaagtcaaaGttcaggtgagtgagactcac	10	11	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2666138	T	T	2666138	3	4	100	1	0	0	0	0	1	0	0	0	2566	1020	36	3	1653	3	CACNA1C	12	2666138	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2244082	2666138	131185757	419	98653											
CACNA1C	775	broad.mit.edu	37	chr12	2788840	2788840	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaacgccaacaacaccgcCctgggtcgcctccctcgccc	7	21	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2788840	A	A	2788840	2	1	100	1	0	0	0	0	0	0	0	1	2566	610	22	2		2	CACNA1C	12	2788840	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	122702	2788840	131063055	420	98654											
PRMT8	56341	broad.mit.edu	37	chr12	3692378	3692378	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatggggttttccacaggtgAgctgtttgttgcttcccaga	12	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3692378	T	T	3692378	1	4	100	0	1	0	0	0	0	0	0	0	12648	319	11	5		5	PRMT8	12	3692378	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	903538	3692378	130159517	421	98655											
CD69	969	broad.mit.edu	37	chr12	9906180	9906180	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgtcagaccctgtaacgTtgaacctgtcaaacaataaa	6	10	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9906180	C	C	9906180	3	2	100	1	0	0	0	0	1	0	0	0	3061	1725	60	5	106	5	CD69	12	9906180	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	6213802	9906180	123945715	422	98656											
GPRC5D	55507	broad.mit.edu	37	chr12	13095310	13095310	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttagtgtccgagagtcaatCggaaacagcacatgaggact	12	8	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13095310	A	A	13095310	1	1	100	0	1	0	0	0	0	0	0	0	6793	899	31	3		3	GPRC5D	12	13095310	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3189130	13095310	120756585	423	98657											
LRRK2	120892	broad.mit.edu	37	chr12	40618848	40618848	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagctgagctcgcccccGgggagctgtggccggcgccc	18	15	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40618848	A	A	40618848	1	1	100	0	1	0	0	0	0	0	0	0	9120	1131	39	4		4	LRRK2	12	40618848	5'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	27523538	40618848	93233047	424	98658											
NELL2	4753	broad.mit.edu	37	chr12	45269002	45269002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggatgcagcacgccggGcataccttgaaagagaaagg	16	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45269002	T	T	45269002	1	4	100	0	1	0	0	0	0	0	0	0	10429	1218	42	3		3	NELL2	12	45269002	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	4650154	45269002	88582893	425	98659											
C12orf54	121273	broad.mit.edu	37	chr12	48882868	48882868	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttatttttctagtgatttCtcccttaaagagtaccactg	5	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48882868	T	T	48882868	1	4	100	0	1	0	0	0	0	0	0	0	1712	928	32	4		4	C12orf54	12	48882868	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3613866	48882868	84969027	426	98660											
BIN2	51411	broad.mit.edu	37	chr12	51685752	51685776	+	Frame_Shift_Del	DEL	GCTGCCCTGAAGGGCTCAGGGCTCC	-	-													ttctgtggcagatgatgaagGctgccctgaagggctcaggg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51685776	-	-	51685752	7	5	100	1	0	1	0	1	0	0	0	0	1439	1203	42	0	575	0	BIN2	12	51685752	Frame_Shift_Del	DEL	GCTGCCCTGAAGGGCTCAGGGCTCC	TCGA-38-4629-01A-02D-1265-08	2802884	51685752	82166143	427	98661											
KRT4	3851	broad.mit.edu	37	chr12	53202335	53202335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtagtttcaaatcagacCaggaccaacgatgcctggga	10	10	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53202335	A	A	53202335	1	1	100	0	1	0	0	0	0	0	0	0	8548	609	21	2		2	KRT4	12	53202335	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1516583	53202335	80649560	428	98662											
SMARCC2	6601	broad.mit.edu	37	chr12	56563453	56563453	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttcctcctgcccttcctTtggctccttctccttctcag	4	19	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56563453	G	G	56563453	3	3	100	1	0	0	0	0	1	0	0	0	14890	1850	64	5	1182	5	SMARCC2	12	56563453	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	3361118	56563453	77288442	429	98663											
KIF5A	3798	broad.mit.edu	37	chr12	57975751	57975752	+	Intron	DNP	GG	TT	TT													caatggtgagtgaaaaagatGggtaatcccacctttggggt							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	57975752	TT	TT	57975751	1	4	100	0	1	0	0	0	0	0	0	0	8375	1363	47	2		2	KIF5A	12	57975751	Intron	DNP	GG	TCGA-38-4629-01A-02D-1265-08	1412298	57975751	75876144	430	98664											
AGAP2	116986	broad.mit.edu	37	chr12	58128353	58128353	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccccaatggttagcttActatggctcttcagaactca	7	12	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58128353	T	T	58128353	1	4	100	0	1	0	0	0	0	0	0	0	368	406	14	5		5	AGAP2	12	58128353	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	152602	58128353	75723542	431	98665											
ACSS3	79611	broad.mit.edu	37	chr12	81545819	81545819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttaggctgggttgttggaCattcctatatctgctatgga	11	7	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81545819	A	A	81545819	3	1	100	1	0	0	0	0	1	0	0	0	190	478	17	3	1068	3	ACSS3	12	81545819	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	23417466	81545819	52306076	432	98666											
ATP2B1	490	broad.mit.edu	37	chr12	89997942	89997942	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacctacttgagtaatgCaggcgcccgtaaaagcaaca	8	12	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89997942	A	A	89997942	3	1	100	1	0	0	0	0	1	0	0	0	1143	710	25	3	1220	3	ATP2B1	12	89997942	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	8452123	89997942	43853953	433	98667											
SLC17A8	246213	broad.mit.edu	37	chr12	100774746	100774746	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcaggttggtatcagtccAtggtggaagacttttctttt	10	6	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100774746	T	T	100774746	1	4	100	0	1	0	0	0	0	0	0	0	14536	232	8	5		5	SLC17A8	12	100774746	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	10776804	100774746	33077149	434	98668											
GAS2L3	283431	broad.mit.edu	37	chr12	100973874	100973874	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactccagattcttatcattGatactggaatagatgccact	7	9	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100973874	T	T	100973874	1	4	100	0	1	0	0	0	0	0	0	0	6310	1305	45	3		3	GAS2L3	12	100973874	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	199128	100973874	32878021	435	98669											
STAB2	55576	broad.mit.edu	37	chr12	104099502	104099502	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaaatgtgtgagaaccgtCattgtgagtacaataattga	9	6	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104099502	T	T	104099502	2	4	100	1	0	0	0	0	0	0	0	1	15356	813	29	4		4	STAB2	12	104099502	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	3125628	104099502	29752393	436	98670											
APPL2	55198	broad.mit.edu	37	chr12	105589110	105589110	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttgcagagcggtctgattCaacttgatcgcgactgccta	11	11	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105589110	G	G	105589110	3	3	100	1	0	0	0	0	1	0	0	0	820	825	29	4	856	4	APPL2	12	105589110	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1489608	105589110	28262785	437	98671											
RFX4	5992	broad.mit.edu	37	chr12	107114570	107114570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaagggtccttgaagaaaGtggcccagcagttcctcttg	12	10	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107114570	A	A	107114570	3	1	100	1	0	0	0	0	1	0	0	0	13373	1029	36	4	1490	4	RFX4	12	107114570	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1525460	107114570	26737325	438	98672											
WSCD2	9671	broad.mit.edu	37	chr12	108603914	108603914	+	Frame_Shift_Del	DEL	G	-	-													ccaggggttacctgtatggcGggctggagttcggcgccgag							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108603914	-	-	108603914	7	5	100	1	0	1	0	1	0	0	0	0	17534	1116	39	0	524	0	WSCD2	12	108603914	Frame_Shift_Del	DEL	G	TCGA-38-4629-01A-02D-1265-08	1489344	108603914	25247981	439	98673											
ALDH2	217	broad.mit.edu	37	chr12	112229818	112229819	+	Intron	DEL	TT	-	-													gtctatagagtgctggactcTtttctcccggcactgagagc							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112229819	-	-	112229818	6	5	100	0	1	1	0	1	0	0	0	0	496	1624	56	0		0	ALDH2	12	112229818	Intron	DEL	TT	TCGA-38-4629-01A-02D-1265-08	3625904	112229818	21622077	440	98674											
TBX3	6926	broad.mit.edu	37	chr12	115120648	115120648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaatgaccatctcggtgcCccgcttgtgaaactgatccc	10	13	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115120648	A	A	115120648	3	1	100	1	0	0	0	0	1	0	0	0	15781	623	22	2	1905	2	TBX3	12	115120648	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	2890830	115120648	18731247	441	98675											
KNTC1	9735	broad.mit.edu	37	chr12	123089424	123089424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcttggaattgtttaaaagGacgaaaaacgtgaaaaagcc	10	5	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123089424	T	T	123089424	3	4	100	1	0	0	0	0	1	0	0	0	8499	1188	41	3	5370	3	KNTC1	12	123089424	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	7968776	123089424	10762471	442	98676											
MMP17	4326	broad.mit.edu	37	chr12	132329613	132329613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgcaggatgccctgtcCcgcgctgcccaggccccgcc	12	21	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132329613	A	A	132329613	1	1	100	0	1	0	0	0	0	0	0	0	9749	638	22	2		2	MMP17	12	132329613	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	9240189	132329613	1522282	443	98677											
NOC4L	79050	broad.mit.edu	37	chr12	132636667	132636668	+	Missense_Mutation	DNP	CG	TT	TT													caccctgaggtgtccaaagcCgccagcgtcatcaaccaggc							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	132636668	TT	TT	132636667	3	4	100	1	0	0	0	0	1	0	0	0	10610	639	23	4	1410	4	NOC4L	12	132636667	Missense_Mutation	DNP	CG	TCGA-38-4629-01A-02D-1265-08	307054	132636667	1215228	444	98678											
ATP12A	479	broad.mit.edu	37	chr13	25265298	25265298	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcttcatcatcgctgtGtccctgaagtatcaagtcct	6	12	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25265298	T	T	25265298	2	4	100	1	0	0	0	0	0	0	0	1	1126	1364	48	3		3	ATP12A	13	25265298	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08		25265298	89904580	445	98679											
ATP12A	479	broad.mit.edu	37	chr13	25285542	25285542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttcatcaggctctaccCtggaagtgagtagcctatga	10	11	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25285542	A	A	25285542	3	1	100	1	0	0	0	0	1	0	0	0	1126	681	24	2	3190	2	ATP12A	13	25285542	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	20244	25285542	89884336	446	98680											
GPR12	2835	broad.mit.edu	37	chr13	27333929	27333929	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctaaataatcccgaggCagcccgcttaaattgacctt	7	12	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27333929	A	A	27333929	2	1	100	1	0	0	0	0	0	0	0	1	6700	697	25	3		3	GPR12	13	27333929	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	2048387	27333929	87835949	447	98681											
MTUS2	23281	broad.mit.edu	37	chr13	29598882	29598882	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcatgttacactcagttgcGggacaacagaaatgcagcaa	9	9	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29598882	A	A	29598882	3	1	100	1	0	0	0	0	1	0	0	0	10060	1116	39	4	79	4	MTUS2	13	29598882	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2264953	29598882	85570996	448	98682											
NBEA	26960	broad.mit.edu	37	chr13	36158090	36158090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatgcagagcgttatgagaCatgggaagatgatcaaagcc	12	6	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36158090	T	T	36158090	3	4	100	1	0	0	0	0	1	0	0	0	10281	478	17	4	7273	4	NBEA	13	36158090	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	6559208	36158090	79011788	449	98683											
POSTN	10631	broad.mit.edu	37	chr13	38160135	38160135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactcttttaaggacttttGgaagacatagtacatctcag	7	8	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38160135	T	T	38160135	1	4	100	0	1	0	0	0	0	0	0	0	12354	1363	47	2		2	POSTN	13	38160135	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2002045	38160135	77009743	450	98684											
TRPC4	7223	broad.mit.edu	37	chr13	38320578	38320578	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagagaactgcttatcaagGagtataggaggcacctaaaa	10	7	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38320578	T	T	38320578	2	4	100	1	0	0	0	0	0	0	0	1	16705	1161	41	3		3	TRPC4	13	38320578	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	160443	38320578	76849300	451	98685											
FREM2	341640	broad.mit.edu	37	chr13	39455020	39455021	+	3'UTR	DNP	TG	AT	AT													aaaccatagagaatggaggaTggctgtgatgaagctgctta							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	39455021	AT	AT	39455020	1	1	100	0	1	0	0	0	0	0	0	0	6105	1479	51	5		5	FREM2	13	39455020	3'UTR	DNP	TG	TCGA-38-4629-01A-02D-1265-08	1134442	39455020	75714858	452	98686											
C13orf18	80183	broad.mit.edu	37	chr13	46946499	46946499	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatgtctaattggcaaggagGatggtcagtgttcaggagtc	15	5	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46946499	A	A	46946499	3	1	100	1	0	0	0	0	1	0	0	0	1733	1174	41	4	1928	4	C13orf18	13	46946499	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	7491479	46946499	68223379	453	98687											
VPS36	51028	broad.mit.edu	37	chr13	52991147	52991147	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagttgctaagccttcgggtCttcatagcaagctctaaaga	10	9	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52991147	T	T	52991147	1	4	100	0	1	0	0	0	0	0	0	0	17331	928	32	4		4	VPS36	13	52991147	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	6044648	52991147	62178731	454	98688											
PCDH9	5101	broad.mit.edu	37	chr13	67801090	67801090	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttttcccactgtcttcatCtgtggcactaatagttgtta	6	9	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67801090	T	T	67801090	3	4	100	1	0	0	0	0	1	0	0	0	11612	913	32	4	2246	4	PCDH9	13	67801090	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	14809943	67801090	47368788	455	98689											
SLITRK1	114798	broad.mit.edu	37	chr13	84455614	84455614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcggcaaaacaaagagacGtctccagcaacagaatccaa	8	12	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84455614	T	T	84455614	3	4	100	1	0	0	0	0	1	0	0	0	14856	1145	40	3	2065	3	SLITRK1	13	84455614	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	16654524	84455614	30714264	456	98690											
NALCN	259232	broad.mit.edu	37	chr13	101936242	101936242	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggatgaaataaaattcaaaGacctttgctgggcgattttt	9	5	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101936242	A	A	101936242	1	1	100	0	1	0	0	0	0	0	0	0	10242	957	33	4		4	NALCN	13	101936242	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	17480628	101936242	13233636	457	98691			1	76		3	3	149	G		4.964206e-06
NALCN	259232	broad.mit.edu	37	chr13	101936320	101936320	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgcgtccctggggcttgttGacatccacagctaccagctg	12	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101936320	C	C	101936320	2	2	100	1	0	0	0	0	0	0	0	1	10242	1277	45	4		4	NALCN	13	101936320	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	78	101936320	13233558	458	98692			1	76		3	3	149	G		4.964206e-06
NALCN	259232	broad.mit.edu	37	chr13	101936390	101936390	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttcaagacaaagaagggaGatgagtcagagacatttaat	10	5	3	5			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101936390	A	A	101936390	1	1	100	0	1	0	0	0	0	0	0	0	10242	957	33	4		4	NALCN	13	101936390	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	70	101936390	13233488	459	98693			1	76		3	3	149	G		4.964206e-06
COL4A2	1284	broad.mit.edu	37	chr13	111083126	111083126	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attccttgcacactttgctgCtgttaaggttgaagaataag	9	7	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111083126	T	T	111083126	1	4	100	0	1	0	0	0	0	0	0	0	3722	812	28	4		4	COL4A2	13	111083126	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	9146736	111083126	4086752	460	98694											
CARKD	55739	broad.mit.edu	37	chr13	111274657	111274657	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatcatacctcctctgtcTtccacaaagcacaaagggca	5	13	3	0	rs142423406	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111274657	A	A	111274657	2	1	100	1	0	0	0	0	0	0	0	1	2680	1596	56	5		5	CARKD	13	111274657	Silent	SNP	T	TCGA-38-4629-01A-02D-1265-08	191531	111274657	3895221	461	98695											
OR4M1	441670	broad.mit.edu	37	chr14	20248603	20248603	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctatttgttcatcctaccagGaaatatccttatcatttgca	4	10	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20248603	C	C	20248603	3	2	100	1	0	0	0	0	1	0	0	0	11169	1174	41	4	124	4	OR4M1	14	20248603	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08		20248603	87100937	462	98696											
TEP1	7011	broad.mit.edu	37	chr14	20859920	20859920	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcatctcaccatcatatttCcactgtctacatgcaagaaa	4	12	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20859920	T	T	20859920	4	4	100	1	0	0	0	0	0	1	0	0	15881	856	30	4	6120	4	TEP1	14	20859920	Nonsense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	611317	20859920	86489620	463	98697											
PNP	4860	broad.mit.edu	37	chr14	20944820	20944820	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtagctgctaccttctttGgccccttgctggagtcatgt	10	11	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20944820	A	A	20944820	1	1	100	0	1	0	0	0	0	0	0	0	12258	1363	47	4		4	PNP	14	20944820	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	84900	20944820	86404720	464	98698											
MYH6	4624	broad.mit.edu	37	chr14	23858607	23858607	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactgggcctcaccttgcCctcctcctccagctgccttt	6	21	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23858607	T	T	23858607	3	4	100	1	0	0	0	0	1	0	0	0	10132	623	22	4	1894	4	MYH6	14	23858607	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	2913787	23858607	83490933	465	98699											
MYH7	4625	broad.mit.edu	37	chr14	23897918	23897918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggagcagtcagaaagtgGgtgtgagtggccattggggc	20	5	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23897918	T	T	23897918	1	4	100	0	1	0	0	0	0	0	0	0	10133	1247	43	2		2	MYH7	14	23897918	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	39311	23897918	83451622	466	98700											
NFATC4	4776	broad.mit.edu	37	chr14	24839463	24839463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccccagctctgtcccgcCgtggcagcctgggggaagag	14	16	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24839463	A	A	24839463	3	1	100	1	0	0	0	0	1	0	0	0	10460	652	23	1	1058	1	NFATC4	14	24839463	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	941545	24839463	82510077	467	98701											
CTSG	1511	broad.mit.edu	37	chr14	25044046	25044046	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagaggtaggtctgggctgCaggagctatggtccaccagc	15	10	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25044046	T	T	25044046	1	4	100	0	1	0	0	0	0	0	0	0	4069	725	25	4		4	CTSG	14	25044046	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	204583	25044046	82305494	468	98702											
RALGAPA1	253959	broad.mit.edu	37	chr14	36217805	36217805	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttacctgacgaaatatctCtgtcacaaagtttacattac	5	9	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36217805	A	A	36217805	4	1	100	1	0	0	0	0	0	1	0	0	13121	922	32	3	5150	3	RALGAPA1	14	36217805	Nonsense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	11173759	36217805	71131735	469	98703											
MIA2	117153	broad.mit.edu	37	chr14	39716257	39716257	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatatgaaagtgattttcAgatagaacctggattttatg	8	3	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39716257	G	G	39716257	3	3	100	1	0	0	0	0	1	0	0	0	9657	188	7	5	493	5	MIA2	14	39716257	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	3498452	39716257	67633283	470	98704											
NID2	22795	broad.mit.edu	37	chr14	52493964	52493964	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaccaggcaggcaggcacAgctgaacgtgctgcctccat	11	13	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52493964	C	C	52493964	3	2	100	1	0	0	0	0	1	0	0	0	10510	188	7	5	1542	5	NID2	14	52493964	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	12777707	52493964	54855576	471	98705											
NID2	22795	broad.mit.edu	37	chr14	52535776	52535776	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccggcctccagcccactctCcgcgccgcgccagcctcgaa	9	23	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52535776	T	T	52535776	1	4	100	0	1	0	0	0	0	0	0	0	10510	870	30	4		4	NID2	14	52535776	5'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	41812	52535776	54813764	472	98706											
DAAM1	23002	broad.mit.edu	37	chr14	59787177	59787177	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaattaaaaaatagaattTgaagaagtaacttctgtttt	6	2	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59787177	A	A	59787177	1	1	100	0	1	0	0	0	0	0	0	0	4248	1827	63	5		5	DAAM1	14	59787177	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	7251401	59787177	47562363	473	98707											
PPP2R5E	5529	broad.mit.edu	37	chr14	63863343	63863343	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgttttcggataaatgctCtaagaccaagaaacttgcca	7	9	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63863343	A	A	63863343	3	1	100	1	0	0	0	0	1	0	0	0	12497	913	32	3	798	3	PPP2R5E	14	63863343	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4076166	63863343	43486197	474	98708											
WDR89	112840	broad.mit.edu	37	chr14	64066246	64066246	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacaccaacaatgcatcatCatcaactttttctgtaccag	3	12	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64066246	A	A	64066246	3	1	100	1	0	0	0	0	1	0	0	0	17463	826	29	3	752	3	WDR89	14	64066246	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	202903	64066246	43283294	475	98709											
ACTN1	87	broad.mit.edu	37	chr14	69347641	69347641	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacgatgctcttctcataCtgccgcaggtggctgagctg	12	11	2	2	rs139138798	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69347641	T	T	69347641	2	4	100	1	0	0	0	0	0	0	0	1	204	564	20	4		4	ACTN1	14	69347641	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	5281395	69347641	38001899	476	98710											
SIPA1L1	26037	broad.mit.edu	37	chr14	72200383	72200383	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcctcctcccttcccgcagGagagttctcagcctcggaca	8	17	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72200383	C	C	72200383	3	2	100	1	0	0	0	0	1	0	0	0	14442	1188	41	4	4995	4	SIPA1L1	14	72200383	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2852742	72200383	35149157	477	98711											
RGS6	9628	broad.mit.edu	37	chr14	72921308	72921308	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttgacctttgaccccacCcttatctcccctggtatcag	5	16	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72921308	T	T	72921308	1	4	100	0	1	0	0	0	0	0	0	0	13418	638	22	4		4	RGS6	14	72921308	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	720925	72921308	34428232	478	98712											
RPS6KL1	83694	broad.mit.edu	37	chr14	75377882	75377882	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacgccctgccagggctcCgcattttaagggttgacgac	11	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75377882	T	T	75377882	1	4	100	0	1	0	0	0	0	0	0	0	13770	667	23	4		4	RPS6KL1	14	75377882	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2456574	75377882	31971658	479	98713											
C14orf166B	145497	broad.mit.edu	37	chr14	77297578	77297578	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttttcaccactggacaaaagGagctgtacctggaggcctgc	11	11	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77297578	C	C	77297578	3	2	100	1	0	0	0	0	1	0	0	0	1770	1175	41	4	260	4	C14orf166B	14	77297578	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1919696	77297578	30051962	480	98714											
TMED8	283578	broad.mit.edu	37	chr14	77808117	77808117	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcccagcagtccttcaGctggtgtagtagatgtggaa	12	10	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77808117	C	C	77808117	3	2	100	1	0	0	0	0	1	0	0	0	16134	962	34	4	5	4	TMED8	14	77808117	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	510539	77808117	29541423	481	98715											
ZC3H14	79882	broad.mit.edu	37	chr14	89061323	89061323	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcaaaaatttcatctttgGaggttaaaatgaatgaatat	7	3	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89061323	T	T	89061323	1	4	100	0	1	0	0	0	0	0	0	0	17692	1175	41	3		3	ZC3H14	14	89061323	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	11253206	89061323	18288217	482	98716											
TDP1	55775	broad.mit.edu	37	chr14	90489427	90489427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttcgttctctggtaacGcatggataagctgaggaaac	12	8	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90489427	T	T	90489427	1	4	100	0	1	0	0	0	0	0	0	0	15850	1102	38	3		3	TDP1	14	90489427	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1428104	90489427	16860113	483	98717											
OTUB2	78990	broad.mit.edu	37	chr14	94510858	94510858	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggcttcacgcgaagggaGggagcggagggagaatgcag	21	6	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94510858	C	C	94510858	1	2	100	0	1	0	0	0	0	0	0	0	11406	1015	35	4		4	OTUB2	14	94510858	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	4021431	94510858	12838682	484	98718											
TCL1B	9623	broad.mit.edu	37	chr14	96152712	96152712	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccactgccggcccgggccCcacccacgccggagctgctc	11	23	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96152712	T	T	96152712	1	4	100	0	1	0	0	0	0	0	0	0	15827	638	22	4		4	TCL1B	14	96152712	5'Flank	SNP	C	TCGA-38-4629-01A-02D-1265-08	1641854	96152712	11196828	485	98719											
NDN	4692	broad.mit.edu	37	chr15	23931842	23931842	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagcgccaccctgtccagctCctcgggctccagcgctttga	10	18	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23931842	G	G	23931842	3	3	100	1	0	0	0	0	1	0	0	0	10342	864	30	4	446	4	NDN	15	23931842	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08		23931842	78599550	486	98720											
HERC2	8924	broad.mit.edu	37	chr15	28459892	28459892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcatttcatgtccctcgcCctttcggtcttgtcccatga	8	14	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28459892	A	A	28459892	3	1	100	1	0	0	0	0	1	0	0	0	7125	622	22	2	8453	2	HERC2	15	28459892	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4528050	28459892	74071500	487	98721											
TRPM1	4308	broad.mit.edu	37	chr15	31294908	31294908	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtgcgttttcacgtccTtctcttcctttatacggaag	8	11	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31294908	C	C	31294908	3	2	100	1	0	0	0	0	1	0	0	0	16710	1609	56	5	886	5	TRPM1	15	31294908	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	2835016	31294908	71236484	488	98722											
TRPM1	4308	broad.mit.edu	37	chr15	31354818	31354818	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcactccattataattgcAaacagctgatgtgattgtgc	8	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31354818	C	C	31354818	3	2	100	1	0	0	0	0	1	0	0	0	16710	127	5	5	3904	5	TRPM1	15	31354818	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	59910	31354818	71176574	489	98723											
AQR	9716	broad.mit.edu	37	chr15	35240533	35240533	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattgacattaaataggcctTgctagatacctcaggagaat	9	7	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35240533	C	C	35240533	3	2	100	1	0	0	0	0	1	0	0	0	837	1821	63	5	4319	5	AQR	15	35240533	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	3885715	35240533	67290859	490	98724											
PAK6	56924	broad.mit.edu	37	chr15	40564327	40564327	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgataccccgcctgaccctgCcagagtccagaggtcacggc	11	16	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40564327	G	G	40564327	1	3	100	0	1	0	0	0	0	0	0	0	11498	754	26	4		4	PAK6	15	40564327	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5323794	40564327	61967065	491	98725											
MAP1A	4130	broad.mit.edu	37	chr15	43822177	43822177	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccttttctaagggcagcaGagctgcttctgagaccatga	12	10	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43822177	A	A	43822177	1	1	100	0	1	0	0	0	0	0	0	0	9319	957	33	4		4	MAP1A	15	43822177	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	3257850	43822177	58709215	492	98726											
FBN1	2200	broad.mit.edu	37	chr15	48818508	48818508	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacaatataaaaccattcGtcagtagaaggactcagatg	7	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48818508	A	A	48818508	1	1	100	0	1	0	0	0	0	0	0	0	5759	1160	40	4		4	FBN1	15	48818508	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	4996331	48818508	53712884	493	98727											
FBN1	2200	broad.mit.edu	37	chr15	48905428	48905428	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagcaaactcatgagactCaatgctgggttggtagcttg	11	7	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48905428	A	A	48905428	1	1	100	0	1	0	0	0	0	0	0	0	5759	841	29	3		3	FBN1	15	48905428	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	86920	48905428	53625964	494	98728											
SECISBP2L	9728	broad.mit.edu	37	chr15	49304865	49304865	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttttaagtgctgtgggtcGttttagttttgcaatttcct	9	6	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49304865	A	A	49304865	4	1	100	1	0	0	0	0	0	1	0	0	14120	1153	40	4	1622	4	SECISBP2L	15	49304865	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	399437	49304865	53226527	495	98729											
TLN2	83660	broad.mit.edu	37	chr15	62989999	62990000	+	Missense_Mutation	DNP	GG	TT	TT													ggcctgagaccttcaacgttGgcagcatgccctcgccacag							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	62990000	TT	TT	62989999	3	4	100	1	0	0	0	0	1	0	0	0	16071	1348	47	2	1451	2	TLN2	15	62989999	Missense_Mutation	DNP	GG	TCGA-38-4629-01A-02D-1265-08	13685134	62989999	39541393	496	98730											
IQCH	64799	broad.mit.edu	37	chr15	67713788	67713788	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccaccgtgcctcagacctCagtggatccccaagttctca	7	16	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67713788	T	T	67713788	3	4	100	1	0	0	0	0	1	0	0	0	7881	838	29	4	2568	4	IQCH	15	67713788	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4723789	67713788	34817604	497	98731											
TMEM202	338949	broad.mit.edu	37	chr15	72699322	72699322	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccaggtttttatctttttGatcctcgctatacatatggc	6	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72699322	T	T	72699322	1	4	100	0	1	0	0	0	0	0	0	0	16250	1305	45	3		3	TMEM202	15	72699322	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	4985534	72699322	29832070	498	98732											
HCN4	10021	broad.mit.edu	37	chr15	73617717	73617717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagcggtgctcgtagtaGtcgtggatgcgctgccgggt	18	8	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73617717	T	T	73617717	3	4	100	1	0	0	0	0	1	0	0	0	7065	1020	36	3	1968	3	HCN4	15	73617717	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	918395	73617717	28913675	499	98733											
UBE2Q2	92912	broad.mit.edu	37	chr15	76183198	76183198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttatataccattttgttaGgccttcccaagtgggaatca	8	8	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76183198	T	T	76183198	1	4	100	0	1	0	0	0	0	0	0	0	16996	1015	35	2		2	UBE2Q2	15	76183198	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2565481	76183198	26348194	500	98734											
IL16	3603	broad.mit.edu	37	chr15	81578230	81578230	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcgttcagtaccaaaattgGaacaagaaatagatgaaaac	7	7	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81578230	T	T	81578230	1	4	100	0	1	0	0	0	0	0	0	0	7703	1189	41	3		3	IL16	15	81578230	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5395032	81578230	20953162	501	98735											
TM6SF1	53346	broad.mit.edu	37	chr15	83791516	83791516	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttttaaatagggaagtaTggaacacgaatttgccctgc	9	8	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83791516	A	A	83791516	4	1	100	1	0	0	0	0	0	1	0	0	16095	1471	51	5	511	5	TM6SF1	15	83791516	Nonsense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	2213286	83791516	18739876	502	98736											
MCTP2	55784	broad.mit.edu	37	chr15	94882710	94882710	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttattaaaaacatttctCagcagtttctcatgtcctct	3	11	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94882710	T	T	94882710	1	4	100	0	1	0	0	0	0	0	0	0	9494	841	29	4		4	MCTP2	15	94882710	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	11091194	94882710	7648682	503	98737											
IGF1R	3480	broad.mit.edu	37	chr15	99459900	99459900	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcttttcttttccgagaaGacaaaatccccatcaggaag	8	10	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99459900	T	T	99459900	5	4	100	1	0	0	0	0	0	0	1	0	7641	956	33	3	2034	3	IGF1R	15	99459900	Splice_Site	SNP	G	TCGA-38-4629-01A-02D-1265-08	4577190	99459900	3071492	504	98738											
MSLN	10232	broad.mit.edu	37	chr16	816879	816879	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcactgtccacccaccgtgtCcccagggcggtcaggcccca	10	19	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	816879	T	T	816879	1	4	100	0	1	0	0	0	0	0	0	0	9975	870	30	4		4	MSLN	16	816879	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08		816879	89537874	505	98739											
CHTF18	63922	broad.mit.edu	37	chr16	843997	843997	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgtcccggggagacggGtggggctgcctgtgctttta	18	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	843997	A	A	843997	1	1	100	0	1	0	0	0	0	0	0	0	3445	1276	44	4		4	CHTF18	16	843997	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	27118	843997	89510756	506	98740											
BAIAP3	8938	broad.mit.edu	37	chr16	1394115	1394115	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttccctgccaccaacagCaccgctgtccaccgcctgga	7	19	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1394115	A	A	1394115	3	1	100	1	0	0	0	0	1	0	0	0	1309	709	25	3	1646	3	BAIAP3	16	1394115	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	550118	1394115	88960638	507	98741											
E4F1	1877	broad.mit.edu	37	chr16	2278460	2278460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaagattcagaaggcctGccagcgggcccctccggagg	14	14	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2278460	T	T	2278460	3	4	100	1	0	0	0	0	1	0	0	0	4914	1319	46	3	251	3	E4F1	16	2278460	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	884345	2278460	88076293	508	98742											
TNFRSF12A	51330	broad.mit.edu	37	chr16	3071600	3071600	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccggctgctttggcccatcCttgggggcgctctgagcctg	14	14	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3071600	T	T	3071600	3	4	100	1	0	0	0	0	1	0	0	0	16409	681	24	4	254	4	TNFRSF12A	16	3071600	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	793140	3071600	87283153	509	98743											
MEFV	4210	broad.mit.edu	37	chr16	3299678	3299678	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcctgggggtgcccagaaActgcctcggggaagctgcag	17	11	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3299678	C	C	3299678	3	2	100	1	0	0	0	0	1	0	0	0	9552	43	2	5	1364	5	MEFV	16	3299678	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	228078	3299678	87055075	510	98744											
ZNF263	10127	broad.mit.edu	37	chr16	3339736	3339736	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agactgtgtatgggtgtggaCtgcactgaaatctttggtgg	15	5	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3339736	T	T	3339736	2	4	100	1	0	0	0	0	0	0	0	1	17929	564	20	4		4	ZNF263	16	3339736	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	40058	3339736	87015017	511	98745											
C16orf90	646174	broad.mit.edu	37	chr16	3544801	3544801	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcactgcggctgcggGgaccccaggcccccctcgta	15	17	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3544801	A	A	3544801	2	1	100	1	0	0	0	0	0	0	0	1	1857	1219	43	4		4	C16orf90	16	3544801	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	205065	3544801	86809952	512	98746											
GLYR1	84656	broad.mit.edu	37	chr16	4855202	4855202	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagagggggtcagaggGgggattggaggggtgagggc	26	2	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4855202	A	A	4855202	1	1	100	0	1	0	0	0	0	0	0	0	6547	1247	43	4		4	GLYR1	16	4855202	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	1310401	4855202	85499551	513	98747											
TNP2	7142	broad.mit.edu	37	chr16	11362767	11362768	+	Frame_Shift_Ins	INS	-	T	T													ctgctggatcctcttggccaINStttttttctttttcagcttg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11362768	T	T	11362767	7	5	100	1	0	1	1	0	0	0	0	0	16457	217	8	0	71	0	TNP2	16	11362767	Frame_Shift_Ins	INS	-	TCGA-38-4629-01A-02D-1265-08	6507565	11362767	78991986	514	98748											
XYLT1	64131	broad.mit.edu	37	chr16	17228667	17228667	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggggaacctaagggcatatCctgtggttagaagcaaagct	14	7	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17228667	A	A	17228667	1	1	100	0	1	0	0	0	0	0	0	0	17590	870	30	3		3	XYLT1	16	17228667	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5865900	17228667	73126086	515	98749											
ACSM2B	348158	broad.mit.edu	37	chr16	20556392	20556392	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccatatctaatgcctcttgGaagtttcagaacatttgtcc	6	10	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20556392	T	T	20556392	1	4	100	0	1	0	0	0	0	0	0	0	184	1189	41	3		3	ACSM2B	16	20556392	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	3327725	20556392	69798361	516	98750											
COG7	91949	broad.mit.edu	37	chr16	23456226	23456226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggctggaaacacaccgaGcagcttcagatcttccccac	9	14	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23456226	A	A	23456226	1	1	100	0	1	0	0	0	0	0	0	0	3695	986	34	4		4	COG7	16	23456226	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2899834	23456226	66898527	517	98751											
PLK1	5347	broad.mit.edu	37	chr16	23691650	23691650	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaggctgggagaaaggaaGgagacaacccacaagtcagt	15	7	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23691650	C	C	23691650	1	2	100	0	1	0	0	0	0	0	0	0	12189	1015	35	4		4	PLK1	16	23691650	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	235424	23691650	66663103	518	98752											
XPO6	23214	broad.mit.edu	37	chr16	28145343	28145343	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actctcagacataaaattttGaagaaatggaaaatgatgga	8	4	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28145343	C	C	28145343	1	2	100	0	1	0	0	0	0	0	0	0	17575	1305	45	4		4	XPO6	16	28145343	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	4453693	28145343	62209410	519	98753											
APOB48R	55911	broad.mit.edu	37	chr16	28506503	28506503	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaggcggctgaggaactGggggtggtggcggtgggaaa	23	6	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28506503	T	T	28506503	2	4	100	1	0	0	0	0	0	0	0	1	788	1335	47	2		2	APOB48R	16	28506503	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	361160	28506503	61848250	520	98754											
ARMC5	79798	broad.mit.edu	37	chr16	31476451	31476451	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataccctaactctagatgcAgccccgcgcccaggatctgg	10	15	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31476451	T	T	31476451	1	4	100	0	1	0	0	0	0	0	0	0	958	188	7	5		5	ARMC5	16	31476451	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	2969948	31476451	58878302	521	98755											
ABCC11	85320	broad.mit.edu	37	chr16	48204199	48204199	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagacccaacctgaccttgtCaatcttccgctgtattggca	8	13	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48204199	A	A	48204199	1	1	100	0	1	0	0	0	0	0	0	0	51	841	29	3		3	ABCC11	16	48204199	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	16727748	48204199	42150554	522	98756											
ZNF423	23090	broad.mit.edu	37	chr16	49670145	49670145	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccttgtgttcggtgagcGtcagcagcgaagggaagcgc	15	10	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49670145	A	A	49670145	3	1	100	1	0	0	0	0	1	0	0	0	18025	1145	40	4	956	4	ZNF423	16	49670145	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1465946	49670145	40684608	523	98757											
MMP2	4313	broad.mit.edu	37	chr16	55539369	55539369	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagctggccctggctcCcacaggcccttcctctccac	9	19	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55539369	T	T	55539369	1	4	100	0	1	0	0	0	0	0	0	0	9751	638	22	4		4	MMP2	16	55539369	3'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	5869224	55539369	34815384	524	98758											
CES7	221223	broad.mit.edu	37	chr16	55907857	55907857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggggactccgaggaacaCgttcacaggcacagggcttc	13	11	1	0	rs140017746	byFrequency;by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55907857	A	A	55907857	3	1	100	1	0	0	0	0	1	0	0	0	3302	536	19	3	1609	3	CES7	16	55907857	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	368488	55907857	34446896	525	98759											
MT1A	4489	broad.mit.edu	37	chr16	56670939	56670939	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaatactgagccatttgCtgcatttctttttatattaa	4	7	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56670939	T	T	56670939	1	4	100	0	1	0	0	0	0	0	0	0	9991	812	28	4		4	MT1A	16	56670939	5'Flank	SNP	C	TCGA-38-4629-01A-02D-1265-08	763082	56670939	33683814	526	98760											
CDH5	1003	broad.mit.edu	37	chr16	66432427	66432427	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaagttcaaattcatcttGaatactgagaacaactttac	6	7	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66432427	A	A	66432427	2	1	100	1	0	0	0	0	0	0	0	1	3143	1281	45	4		4	CDH5	16	66432427	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	9761488	66432427	23922326	527	98761											
EDC4	23644	broad.mit.edu	37	chr16	67913844	67913844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgtgtctgccatgagcaGcacctcagctgtggacccct	11	14	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67913844	A	A	67913844	3	1	100	1	0	0	0	0	1	0	0	0	4948	971	34	4	1975	4	EDC4	16	67913844	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1481417	67913844	22440909	528	98762											
NIP7	51388	broad.mit.edu	37	chr16	69375417	69375417	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacttcagtgagttagtgtCtcttcttttgaatcccaggg	10	8	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69375417	G	G	69375417	1	3	100	0	1	0	0	0	0	0	0	0	10516	928	32	4		4	NIP7	16	69375417	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1461573	69375417	20979336	529	98763											
PDPR	55066	broad.mit.edu	37	chr16	70172802	70172802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgccctctgtctatatagGtaccttgccgaatggatggt	11	10	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70172802	T	T	70172802	3	4	100	1	0	0	0	0	1	0	0	0	11783	1275	44	3	1225	3	PDPR	16	70172802	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	797385	70172802	20181951	530	98764											
CLEC18B	497190	broad.mit.edu	37	chr16	74447649	74447649	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacacagctttcgctatcaTccaggcgaacagagggctcc	11	13	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74447649	C	C	74447649	1	2	100	0	1	0	0	0	0	0	0	0	3535	1450	50	5		5	CLEC18B	16	74447649	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	4274847	74447649	15907104	531	98765											
CLEC18B	497190	broad.mit.edu	37	chr16	74451961	74451961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagcacactcacctgcGtgtagtgggtgcaggtggcg	15	12	1	0	rs151079980	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74451961	T	T	74451961	3	4	100	1	0	0	0	0	1	0	0	0	3535	1145	40	3	959	3	CLEC18B	16	74451961	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	4312	74451961	15902792	532	98766											
CNTNAP4	85445	broad.mit.edu	37	chr16	76528859	76528859	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaatgaaacgcaaacctaCtggggaggttcttcgcctga	10	11	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76528859	A	A	76528859	4	1	100	1	0	0	0	0	0	1	0	0	3681	576	20	3	2200	3	CNTNAP4	16	76528859	Nonsense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	2076898	76528859	13825894	533	98767											
ADAMTS18	170692	broad.mit.edu	37	chr16	77369845	77369845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcccgtcagagaccacctGggaaagcgcagggagttgcc	14	12	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77369845	T	T	77369845	1	4	100	0	1	0	0	0	0	0	0	0	263	1363	47	2		2	ADAMTS18	16	77369845	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	840986	77369845	12984908	534	98768											
ZNF594	84622	broad.mit.edu	37	chr17	5085737	5085737	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaggtctgagctctgattGaaagttttcccacattcttt	8	8	3	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5085737	A	A	5085737	2	1	100	1	0	0	0	0	0	0	0	1	18151	1281	45	4		4	ZNF594	17	5085737	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08		5085737	76109473	535	98769											
NEURL4	84461	broad.mit.edu	37	chr17	7220798	7220798	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgctcccagctcccctcGgtccagcactctccgtacag	7	20	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7220798	A	A	7220798	4	1	100	1	0	0	0	0	0	1	0	0	10442	1124	39	4	400	4	NEURL4	17	7220798	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	2135061	7220798	73974412	536	98770											
POLR2A	5430	broad.mit.edu	37	chr17	7416687	7416687	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtctcccagctactcaccgAcatctcccagctactcgcca	5	20	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7416687	T	T	7416687	3	4	100	1	0	0	0	0	1	0	0	0	12309	275	10	5	5218	5	POLR2A	17	7416687	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	195889	7416687	73778523	537	98771											
TP53	7157	broad.mit.edu	37	chr17	7578246	7578247	+	Frame_Shift_Ins	INS	-	A	A													catccaaatactccacacgcINSaaatttccttccactcggat							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578247	A	A	7578246	7	5	100	1	0	1	1	0	0	0	0	0	16505	709	25	0	691	0	TP53	17	7578246	Frame_Shift_Ins	INS	-	TCGA-38-4629-01A-02D-1265-08	161559	7578246	73616964	538	98772											
RCVRN	5957	broad.mit.edu	37	chr17	9801290	9801290	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggcctttctcttggccCtggggtggatgtgtgtgtgt	16	8	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9801290	T	T	9801290	1	4	100	0	1	0	0	0	0	0	0	0	13294	696	24	4		4	RCVRN	17	9801290	3'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	2223044	9801290	71393920	539	98773											
MYH13	8735	broad.mit.edu	37	chr17	10223651	10223651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggctgagacacagaggtgGtaaaagaaatatctactttt	10	5	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10223651	T	T	10223651	1	4	100	0	1	0	0	0	0	0	0	0	10126	1276	44	3		3	MYH13	17	10223651	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	422361	10223651	70971559	540	98774											
MYH4	4622	broad.mit.edu	37	chr17	10358324	10358324	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatatggcttgagtgcgcGtgatgagttgagctagcttt	14	6	0	4	rs143572602	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10358324	A	A	10358324	3	1	100	1	0	0	0	0	1	0	0	0	10131	1145	40	4	3530	4	MYH4	17	10358324	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	134673	10358324	70836886	541	98775											
MYOCD	93649	broad.mit.edu	37	chr17	12639576	12639576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagactcgaagtgaagacCcccaaaactcagcgggatcc	9	13	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12639576	A	A	12639576	3	1	100	1	0	0	0	0	1	0	0	0	10181	623	22	2	536	2	MYOCD	17	12639576	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	2281252	12639576	68555634	542	98776											
NCOR1	9611	broad.mit.edu	37	chr17	16056804	16056804	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttatctaagactaatctaTagatgaacttatccttattt	3	6	2	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16056804	C	C	16056804	1	2	100	0	1	0	0	0	0	0	0	0	10330	1421	49	5		5	NCOR1	17	16056804	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	3417228	16056804	65138406	543	98777											
ZNF624	57547	broad.mit.edu	37	chr17	16527049	16527049	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacatttatagggtttctctCcagtttgaattctctggtgc	8	8	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16527049	T	T	16527049	3	4	100	1	0	0	0	0	1	0	0	0	18175	855	30	4	1450	4	ZNF624	17	16527049	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	470245	16527049	64668161	544	98778											
RAI1	10743	broad.mit.edu	37	chr17	17701269	17701269	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccttgcccctctcctccacGatgcacttggggcctgtggt	10	16	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17701269	A	A	17701269	2	1	100	1	0	0	0	0	0	0	0	1	13115	1045	37	4		4	RAI1	17	17701269	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	1174220	17701269	63493941	545	98779											
MYO15A	51168	broad.mit.edu	37	chr17	18022483	18022483	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggccgcctgcggccgcgCgcccggtcactcagcaaagc	13	18	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18022483	T	T	18022483	2	4	100	1	0	0	0	0	0	0	0	1	10157	755	27	4		4	MYO15A	17	18022483	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	321214	18022483	63172727	546	98780											
NUFIP2	57532	broad.mit.edu	37	chr17	27621146	27621146	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggatctgagactgcttctCagggctcactcagtatatct	9	11	5	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27621146	G	G	27621146	1	3	100	0	1	0	0	0	0	0	0	0	10844	841	29	4		4	NUFIP2	17	27621146	5'UTR	SNP	C	TCGA-38-4629-01A-02D-1265-08	9598663	27621146	53574064	547	98781											
EFCAB5	374786	broad.mit.edu	37	chr17	28386771	28386771	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtaattaacttggcttcaAgtttctcagtacacatatac	6	8	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28386771	C	C	28386771	1	2	100	0	1	0	0	0	0	0	0	0	4978	87	3	5		5	EFCAB5	17	28386771	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	765625	28386771	52808439	548	98782											
SLC6A4	6532	broad.mit.edu	37	chr17	28548546	28548546	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accccaggtcgcagcccaccCgggtcacagcccaccccggg	11	21	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28548546	T	T	28548546	1	4	100	0	1	0	0	0	0	0	0	0	14800	667	23	4		4	SLC6A4	17	28548546	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	161775	28548546	52646664	549	98783											
GOSR1	9527	broad.mit.edu	37	chr17	28808315	28808315	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctcctatgccttaactGtgtttttaaagcattaaaaa	5	8	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28808315	A	A	28808315	1	1	100	0	1	0	0	0	0	0	0	0	6641	1392	48	4		4	GOSR1	17	28808315	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	259769	28808315	52386895	550	98784											
NF1	4763	broad.mit.edu	37	chr17	29560147	29560147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgatcggtttgagagattGgtggaactggtcacaatgat	14	5	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29560147	T	T	29560147	3	4	100	1	0	0	0	0	1	0	0	0	10451	1339	47	2	3791	2	NF1	17	29560147	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	751832	29560147	51635063	551	98785											
UTP6	55813	broad.mit.edu	37	chr17	30226772	30226772	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggagaaagccatttaaacTtcacttgaaaactgcaaaaa	7	7	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30226772	G	G	30226772	1	3	100	0	1	0	0	0	0	0	0	0	17229	1624	56	5		5	UTP6	17	30226772	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	666625	30226772	50968438	552	98786											
RHOT1	55288	broad.mit.edu	37	chr17	30502272	30502274	+	Intron	DEL	TAG	-	-													gatgagtgttgcatagaattTagcttggccattagttttta							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30502274	-	-	30502272	6	5	100	0	1	1	0	1	0	0	0	0	13452	1769	61	0		0	RHOT1	17	30502272	Intron	DEL	TAG	TCGA-38-4629-01A-02D-1265-08	275500	30502272	50692938	553	98787											
ACCN1	40	broad.mit.edu	37	chr17	32366877	32366877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgtgggtccaggctatgCaattcttccatcatttctac	8	12	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32366877	A	A	32366877	1	1	100	0	1	0	0	0	0	0	0	0	128	725	25	3		3	ACCN1	17	32366877	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1864605	32366877	48828333	554	98788											
CCL23	6368	broad.mit.edu	37	chr17	34344822	34344822	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagagcttgagttaccatGaacctggtcatctgagagaa	10	9	2	5			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34344822	T	T	34344822	1	4	100	0	1	0	0	0	0	0	0	0	2923	1305	45	3		3	CCL23	17	34344822	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1977945	34344822	46850388	555	98789											
ERBB2	2064	broad.mit.edu	37	chr17	37868201	37868201	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaactacctttctacggacGtgggatcctgcaccctcgtc	8	15	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37868201	A	A	37868201	3	1	100	1	0	0	0	0	1	0	0	0	5248	1145	40	4	952	4	ERBB2	17	37868201	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	3523379	37868201	43327009	556	98790											
KRT14	3861	broad.mit.edu	37	chr17	39742587	39742587	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcaggtcctcaatggtcTtgaagtagggactgtagtct	11	9	4	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39742587	C	C	39742587	3	2	100	1	0	0	0	0	1	0	0	0	8522	1609	56	5	950	5	KRT14	17	39742587	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	1874386	39742587	41452623	557	98791											
NT5C3L	115024	broad.mit.edu	37	chr17	39988776	39988776	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccattagtccatatcaagttCttcccagcaacgtcctacag	5	14	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39988776	A	A	39988776	1	1	100	0	1	0	0	0	0	0	0	0	10784	928	32	3		3	NT5C3L	17	39988776	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	246189	39988776	41206434	558	98792											
KCNH4	23415	broad.mit.edu	37	chr17	40312060	40312060	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggccctgggccagggtcAgtggaacgtgtctgacctgg	17	11	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40312060	T	T	40312060	4	4	100	1	0	0	0	0	0	0	0	0	8104	201	7	5	5	5	KCNH4	17	40312060	Nonstop_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	323284	40312060	40883150	559	98793											
EZH1	2145	broad.mit.edu	37	chr17	40857122	40857122	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacctcaccacagtattcaGaaatgaattcgttcttctgc	5	12	5	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40857122	A	A	40857122	3	1	100	1	0	0	0	0	1	0	0	0	5376	942	33	4	344	4	EZH1	17	40857122	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	545062	40857122	40338088	560	98794											
MPP2	4355	broad.mit.edu	37	chr17	41958710	41958710	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcactgcccccttcgacaTggcatgcctaaaacggacat	8	15	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41958710	C	C	41958710	3	2	100	1	0	0	0	0	1	0	0	0	9828	1464	51	5	861	5	MPP2	17	41958710	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	1101588	41958710	39236500	561	98795											
MAP3K14	9020	broad.mit.edu	37	chr17	43351999	43351999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgttaagacagggtgagGggaccagagctgggtccctg	17	8	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43351999	A	A	43351999	1	1	100	0	1	0	0	0	0	0	0	0	9340	1247	43	4		4	MAP3K14	17	43351999	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1393289	43351999	37843211	562	98796											
IGF2BP1	10642	broad.mit.edu	37	chr17	47122386	47122386	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaacacctgactccaaagttCgtatggttatcatcactgga	7	10	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47122386	G	G	47122386	3	3	100	1	0	0	0	0	1	0	0	0	7643	884	31	4	1400	4	IGF2BP1	17	47122386	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	3770387	47122386	34072824	563	98797											
CA10	56934	broad.mit.edu	37	chr17	50212395	50212395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagagcctcctgactgCcctcctgaggtcgcctgtga	10	17	0	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50212395	T	T	50212395	1	4	100	0	1	0	0	0	0	0	0	0	2537	754	26	4		4	CA10	17	50212395	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	3090009	50212395	30982815	564	98798											
STXBP4	252983	broad.mit.edu	37	chr17	53237247	53237247	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatgaagaggattgctctaGagaactccccaaccagaaaa	9	9	1	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53237247	C	C	53237247	3	2	100	1	0	0	0	0	1	0	0	0	15473	942	33	4	1699	4	STXBP4	17	53237247	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	3024852	53237247	27957963	565	98799											
EPX	8288	broad.mit.edu	37	chr17	56270748	56270748	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagcatcaagcagcggcttCgcagcggttcagccagcccc	12	16	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56270748	T	T	56270748	3	4	100	1	0	0	0	0	1	0	0	0	5242	884	31	4	197	4	EPX	17	56270748	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	3033501	56270748	24924462	566	98800											
RNF43	54894	broad.mit.edu	37	chr17	56439904	56439904	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagaccccacactgctcaCcggcctgctgtggcgggggc	13	16	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56439904	G	G	56439904	5	3	100	1	0	0	0	0	0	0	1	0	13606	521	18	4	1683	4	RNF43	17	56439904	Splice_Site	SNP	C	TCGA-38-4629-01A-02D-1265-08	169156	56439904	24755306	567	98801											
RPS6KB1	6198	broad.mit.edu	37	chr17	57992021	57992021	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaagtacgaaaagtaacagGagcaaatactgggaaaatat	9	5	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57992021	C	C	57992021	3	2	100	1	0	0	0	0	1	0	0	0	13767	1174	41	4	352	4	RPS6KB1	17	57992021	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1552117	57992021	23203189	568	98802											
PPM1D	8493	broad.mit.edu	37	chr17	58733925	58733925	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtggcagctaaatctgAgttactttccttctccttgt	8	9	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58733925	G	G	58733925	1	3	100	0	1	0	0	0	0	0	0	0	12438	319	11	5		5	PPM1D	17	58733925	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	741904	58733925	22461285	569	98803											
MAP3K3	4215	broad.mit.edu	37	chr17	61769568	61769568	+	Intron	DEL	C	-	-													gggagaaaatgcaagagggtCcagggttgcagcctctgccc							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61769568	-	-	61769568	6	5	100	0	1	1	0	1	0	0	0	0	9343	870	30	0		0	MAP3K3	17	61769568	Intron	DEL	C	TCGA-38-4629-01A-02D-1265-08	3035643	61769568	19425642	570	98804											
CACNG5	27091	broad.mit.edu	37	chr17	64873625	64873625	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccctgcactcaggcctcTggcgggtctgcttccttgca	11	15	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64873625	A	A	64873625	3	1	100	1	0	0	0	0	1	0	0	0	2586	1580	55	5	177	5	CACNG5	17	64873625	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	3104057	64873625	16321585	571	98805											
ABCA9	10350	broad.mit.edu	37	chr17	67018060	67018060	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttataatgagaaccatattTctcaaaaatgtaaaatattg	4	4	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67018060	G	G	67018060	1	3	100	0	1	0	0	0	0	0	0	0	39	1798	62	5		5	ABCA9	17	67018060	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	2144435	67018060	14177150	572	98806											
SDK2	54549	broad.mit.edu	37	chr17	71427594	71427594	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacctacagggatgtaCacacgcacacacaaatgtat	7	12	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71427594	T	T	71427594	1	4	100	0	1	0	0	0	0	0	0	0	14082	493	17	4		4	SDK2	17	71427594	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	4409534	71427594	9767616	573	98807											
C17orf28	283987	broad.mit.edu	37	chr17	72952106	72952106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccaagccatccctgcaCatcctgggccggggtggaac	12	15	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72952106	A	A	72952106	1	1	100	0	1	0	0	0	0	0	0	0	1869	493	17	3		3	C17orf28	17	72952106	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	1524512	72952106	8243104	574	98808											
UNK	85451	broad.mit.edu	37	chr17	73780792	73780792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgccagcaaccctctgcCgacggtaaaattccagccgg	9	15	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73780792	A	A	73780792	1	1	100	0	1	0	0	0	0	0	0	0	17126	667	23	1		1	UNK	17	73780792	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	828686	73780792	7414418	575	98809											
BAHCC1	57597	broad.mit.edu	37	chr17	79389319	79389319	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaaataacagaaaatggcActttagtgggggccggtccc	14	8	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79389319	T	T	79389319	1	4	100	0	1	0	0	0	0	0	0	0	1301	174	6	5		5	BAHCC1	17	79389319	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	5608527	79389319	1805891	576	98810											
FASN	2194	broad.mit.edu	37	chr17	80046702	80046702	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtccctgtgatccttcttCatcagggggatgatggtgca	12	9	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80046702	T	T	80046702	3	4	100	1	0	0	0	0	1	0	0	0	5740	826	29	4	5296	4	FASN	17	80046702	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	657383	80046702	1148508	577	98811											
PPP4R1	9989	broad.mit.edu	37	chr18	9594955	9594955	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggatactttcattttccCtactgaagttaataaaacca	5	8	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9594955	A	A	9594955	1	1	100	0	1	0	0	0	0	0	0	0	12504	696	24	2		2	PPP4R1	18	9594955	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08		9594955	68482293	578	98812											
FAM38B	63895	broad.mit.edu	37	chr18	10672737	10672737	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggactgactttgtcattgaaGaccaccagttccagggcctg	11	11	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10672737	C	C	10672737	2	2	100	1	0	0	0	0	0	0	0	1	5606	929	33	4		4	FAM38B	18	10672737	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	1077782	10672737	67404511	579	98813											
POTEC	388468	broad.mit.edu	37	chr18	14542598	14542598	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcatccccccatgtcccGcctcctcccatcccaggccc	4	25	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14542598	A	A	14542598	1	1	100	0	1	0	0	0	0	0	0	0	12358	1102	38	4		4	POTEC	18	14542598	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	3869861	14542598	63534650	580	98814											
ZNF521	25925	broad.mit.edu	37	chr18	22807089	22807089	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcggggtggcactctgcaaTgtgtttttggaggtcttccg	14	8	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22807089	A	A	22807089	3	1	100	1	0	0	0	0	1	0	0	0	18092	1464	51	5	3162	5	ZNF521	18	22807089	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	8264491	22807089	55270159	581	98815											
TAF4B	6875	broad.mit.edu	37	chr18	23873416	23873416	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctaaagcaaattactctgCctggaaataaaattctgtca	5	8	4	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23873416	T	T	23873416	3	4	100	1	0	0	0	0	1	0	0	0	15646	739	26	4	1787	4	TAF4B	18	23873416	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1066327	23873416	54203832	582	98816											
DCC	1630	broad.mit.edu	37	chr18	50977051	50977051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaggtaacagctggttcCcaagaggaaagaagtcattg	12	6	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50977051	A	A	50977051	1	1	100	0	1	0	0	0	0	0	0	0	4315	638	22	2		2	DCC	18	50977051	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	27103635	50977051	27100197	583	98817											
DCC	1630	broad.mit.edu	37	chr18	50994220	50994220	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaattaggtaaagtgttgCatccttgaagagggcatgtt	12	4	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50994220	T	T	50994220	1	4	100	0	1	0	0	0	0	0	0	0	4315	725	25	4		4	DCC	18	50994220	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	17169	50994220	27083028	584	98818											
ATP8B1	5205	broad.mit.edu	37	chr18	55329662	55329662	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcatctaaaagtggctccAaatgaacttctttcttttga	6	8	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55329662	C	C	55329662	1	2	100	0	1	0	0	0	0	0	0	0	1198	145	5	5		5	ATP8B1	18	55329662	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	4335442	55329662	22747586	585	98819											
NETO1	81832	broad.mit.edu	37	chr18	70502465	70502465	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatggtgttagatcaacgttCtgggcaccacagcatccaga	11	10	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70502465	T	T	70502465	1	4	100	0	1	0	0	0	0	0	0	0	10434	928	32	4		4	NETO1	18	70502465	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	15172803	70502465	7574783	586	98820											
TMPRSS9	360200	broad.mit.edu	37	chr19	2408684	2408684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcaggcgggcaaataacGcagaaaagggccaggtgagg	17	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2408684	T	T	2408684	1	4	100	0	1	0	0	0	0	0	0	0	16376	1102	38	3		3	TMPRSS9	19	2408684	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08		2408684	56720299	587	98821											
ATCAY	85300	broad.mit.edu	37	chr19	3910966	3910966	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgcatgcatttgtgtgTgcatgtgtgcacgtgtgtgc	14	6	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3910966	C	C	3910966	1	2	100	0	1	0	0	0	0	0	0	0	1081	1711	59	5		5	ATCAY	19	3910966	Intron	SNP	T	TCGA-38-4629-01A-02D-1265-08	1502282	3910966	55218017	588	98822											
FSD1	79187	broad.mit.edu	37	chr19	4312058	4312058	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccctgacaggtaagggcaGtgtgtgccagctccgcccag	13	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4312058	C	C	4312058	1	2	100	0	1	0	0	0	0	0	0	0	6130	1044	36	4		4	FSD1	19	4312058	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	401092	4312058	54816925	589	98823											
ACTL9	284382	broad.mit.edu	37	chr19	8807981	8807981	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctggcagagcgcgcagcagCtctgcccggaagcgaccctc	14	16	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8807981	G	G	8807981	3	3	100	1	0	0	0	0	1	0	0	0	203	796	28	4	183	4	ACTL9	19	8807981	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4495923	8807981	50321002	590	98824											
SMARCA4	6597	broad.mit.edu	37	chr19	11169547	11169547	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccagaacgcacagaccttCaacctggagggctccctggt	11	14	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11169547	T	T	11169547	2	4	100	1	0	0	0	0	0	0	0	1	14884	825	29	4		4	SMARCA4	19	11169547	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	2361566	11169547	47959436	591	98825											
ZNF799	90576	broad.mit.edu	37	chr19	12502033	12502033	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccacatatcttgcatttGtgaggtccatctccagtgtg	8	11	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12502033	A	A	12502033	2	1	100	1	0	0	0	0	0	0	0	1	18295	1368	48	4		4	ZNF799	19	12502033	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	1332486	12502033	46626950	592	98826											
CHERP	10523	broad.mit.edu	37	chr19	16631280	16631280	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagcgggaggaagaacgcCctcgactcttggatctgctc	14	11	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16631280	T	T	16631280	3	4	100	1	0	0	0	0	1	0	0	0	3367	623	22	4	526	4	CHERP	19	16631280	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	4129247	16631280	42497703	593	98827											
HAPLN4	404037	broad.mit.edu	37	chr19	19380736	19380736	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgaacggggaaataacaGtgagaccctctgtccaagaa	11	8	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19380736	A	A	19380736	1	1	100	0	1	0	0	0	0	0	0	0	7023	1044	36	4		4	HAPLN4	19	19380736	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2749456	19380736	39748247	594	98828											
CCNE1	898	broad.mit.edu	37	chr19	30313082	30313082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccaccttccctgcagctGgagtgaggaactctagaata	12	11	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30313082	T	T	30313082	1	4	100	0	1	0	0	0	0	0	0	0	2950	1363	47	2		2	CCNE1	19	30313082	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	10932346	30313082	28815901	595	98829											
RHPN2	85415	broad.mit.edu	37	chr19	33517469	33517469	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagctcttccttgagcatCtgcaggtctgagttgacgaa	10	11	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33517469	T	T	33517469	2	4	100	1	0	0	0	0	0	0	0	1	13460	912	32	4		4	RHPN2	19	33517469	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	3204387	33517469	25611514	596	98830											
PSG5	5673	broad.mit.edu	37	chr19	43687515	43687515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggattctgcatccaacatcCagtctctaaagaggttttgg	9	9	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43687515	A	A	43687515	1	1	100	0	1	0	0	0	0	0	0	0	12764	609	21	2		2	PSG5	19	43687515	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	10170046	43687515	15441468	597	98831											
CD177	57126	broad.mit.edu	37	chr19	43866423	43866423	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcacttggggggtggggcTggcactggccccagcgctgt	17	12	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43866423	C	C	43866423	3	2	100	1	0	0	0	0	1	0	0	0	3001	1580	55	5	1299	5	CD177	19	43866423	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	178908	43866423	15262560	598	98832											
GPR4	2828	broad.mit.edu	37	chr19	46095096	46095096	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtccacgcgcgagtccacgTggcagccctcccacgtgtgg	14	16	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46095096	G	G	46095096	3	3	100	1	0	0	0	0	1	0	0	0	6759	1696	59	5	1063	5	GPR4	19	46095096	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	2228673	46095096	13033887	599	98833											
CCDC61	729440	broad.mit.edu	37	chr19	46506741	46506741	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatcttctgtcatatgctGgagtcagccctcactcaggt	8	12	6	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46506741	T	T	46506741	2	4	100	1	0	0	0	0	0	0	0	1	2860	1335	47	2		2	CCDC61	19	46506741	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	411645	46506741	12622242	600	98834											
LIG1	3978	broad.mit.edu	37	chr19	48624242	48624242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacatctttctatcccagCctgtttttctatatgaagca	5	11	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48624242	A	A	48624242	1	1	100	0	1	0	0	0	0	0	0	0	8853	754	26	3		3	LIG1	19	48624242	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2117501	48624242	10504741	601	98835											
RASIP1	54922	broad.mit.edu	37	chr19	49223990	49223990	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagaaagctttgcgctcaGgcgggctcctgtccgtagaa	12	13	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49223990	A	A	49223990	1	1	100	0	1	0	0	0	0	0	0	0	13186	1015	35	4		4	RASIP1	19	49223990	3'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	599748	49223990	9904993	602	98836											
LRRC4B	94030	broad.mit.edu	37	chr19	51021452	51021452	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttccttctccgtcccccgCggctgcagggcctcctctcc	10	20	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51021452	T	T	51021452	2	4	100	1	0	0	0	0	0	0	0	1	9094	755	27	4		4	LRRC4B	19	51021452	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	1797462	51021452	8107531	603	98837											
ZNF578	147660	broad.mit.edu	37	chr19	53007912	53007912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtttcattttagggacGcttgactttcagggatgtgg	14	5	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53007912	T	T	53007912	3	4	100	1	0	0	0	0	1	0	0	0	18137	1087	38	3	74	3	ZNF578	19	53007912	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1986460	53007912	6121071	604	98838											
KIR3DL1	3811	broad.mit.edu	37	chr19	55341916	55341916	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaatgtctaggtccccacTgcctgctggaaagaaaacac	8	12	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55341916	A	A	55341916	1	1	100	0	1	0	0	0	0	0	0	0	8391	1595	55	5		5	KIR3DL1	19	55341916	3'UTR	SNP	T	TCGA-38-4629-01A-02D-1265-08	2334004	55341916	3787067	605	98839											
KIR3DL1	3811	broad.mit.edu	37	chr19	55354426	55354426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccctggggaggtggaaaCcttggattcaggcgttgact	15	8	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55354426	A	A	55354426	1	1	100	0	1	0	0	0	0	0	0	0	8391	522	18	3		3	KIR3DL1	19	55354426	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	12510	55354426	3774557	606	98840											
PEG3	5178	broad.mit.edu	37	chr19	57325767	57325767	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagctccttatgtttaGtgaggactgtgctatgaata	11	5	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57325767	A	A	57325767	3	1	100	1	0	0	0	0	1	0	0	0	11814	1029	36	4	727	4	PEG3	19	57325767	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1971341	57325767	1803216	607	98841											
USP29	57663	broad.mit.edu	37	chr19	57640928	57640928	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttgggaaacacctgttaCatgaatgcagttttacaatc	7	7	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57640928	A	A	57640928	4	1	100	1	0	0	0	0	0	1	0	0	17186	489	17	3	887	3	USP29	19	57640928	Nonsense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	315161	57640928	1488055	608	98842											
DUXA	503835	broad.mit.edu	37	chr19	57671826	57671826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcacctcctgtgagctcGctcatcctcagtatccacat	5	17	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57671826	T	T	57671826	1	4	100	0	1	0	0	0	0	0	0	0	4874	1102	38	3		3	DUXA	19	57671826	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	30898	57671826	1457157	609	98843											
ZNF17	7565	broad.mit.edu	37	chr19	57932863	57932863	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagataaagaatgtatatatAaagcagatggggaaagactt	10	3	0	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57932863	G	G	57932863	1	3	100	0	1	0	0	0	0	0	0	0	17869	377	13	5		5	ZNF17	19	57932863	3'UTR	SNP	A	TCGA-38-4629-01A-02D-1265-08	261037	57932863	1196120	610	98844											
SIGLEC1	6614	broad.mit.edu	37	chr20	3672024	3672024	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggagcagaggcagcagcCccagtggggagctcagccag	16	12	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3672024	A	A	3672024	2	1	100	1	0	0	0	0	0	0	0	1	14418	610	22	2		2	SIGLEC1	20	3672024	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08		3672024	59353496	611	98845											
PLCB1	23236	broad.mit.edu	37	chr20	8769149	8769149	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtcagaacaatcagttaaaGaagctcaaagaaatctgtga	8	6	4	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8769149	A	A	8769149	2	1	100	1	0	0	0	0	0	0	0	1	12122	933	33	4		4	PLCB1	20	8769149	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	5097125	8769149	54256371	612	98846											
CST8	10047	broad.mit.edu	37	chr20	23472293	23472293	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagtcgactttgcctcttGcccaagggaccatgcccagg	12	13	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23472293	A	A	23472293	1	1	100	0	1	0	0	0	0	0	0	0	4012	1334	46	4		4	CST8	20	23472293	5'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	14703144	23472293	39553227	613	98847											
NCOA6	23054	broad.mit.edu	37	chr20	33330872	33330872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcattctctgggagtcgGggttcagggggccccttgga	18	9	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33330872	A	A	33330872	3	1	100	1	0	0	0	0	1	0	0	0	10328	1232	43	4	3023	4	NCOA6	20	33330872	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	9858579	33330872	29694648	614	98848											
WFDC10B	280664	broad.mit.edu	37	chr20	44313498	44313498	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcatacaaatgttcccacAgaaggctgaacagcatatct	7	11	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44313498	T	T	44313498	3	4	100	1	0	0	0	0	1	0	0	0	17475	188	7	5	32	5	WFDC10B	20	44313498	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	10982626	44313498	18712022	615	98849											
SULF2	55959	broad.mit.edu	37	chr20	46294926	46294926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtcatcttggtcctcagGggcccaagaggtgtgggaag	15	9	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46294926	T	T	46294926	1	4	100	0	1	0	0	0	0	0	0	0	15489	1247	43	2		2	SULF2	20	46294926	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1981428	46294926	16730594	616	98850											
PTPN1	5770	broad.mit.edu	37	chr20	49196154	49196154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgagagcccctcgccaagCcgtcacctctgctcatgcaa	9	18	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49196154	T	T	49196154	1	4	100	0	1	0	0	0	0	0	0	0	12885	754	26	4		4	PTPN1	20	49196154	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2901228	49196154	13829366	617	98851											
MOCS3	27304	broad.mit.edu	37	chr20	49575710	49575710	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggcgtgggccgccttggcCttgtggactatgacgtggta	16	11	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49575710	G	G	49575710	3	3	100	1	0	0	0	0	1	0	0	0	9786	681	24	4	333	4	MOCS3	20	49575710	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	379556	49575710	13449810	618	98852											
ZFP64	55734	broad.mit.edu	37	chr20	50769377	50769377	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacgtccgagttcttactctCactgtactcactgtgctgtc	7	14	3	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50769377	T	T	50769377	3	4	100	1	0	0	0	0	1	0	0	0	17778	835	29	4	1886	4	ZFP64	20	50769377	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	1193667	50769377	12256143	619	98853											
PRIC285	85441	broad.mit.edu	37	chr20	62202177	62202177	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcctgcagctcctgtgctGagtgtgccttggtgcaggcg	14	12	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62202177	T	T	62202177	4	4	100	1	0	0	0	0	0	1	0	0	12591	1294	45	3	7721	3	PRIC285	20	62202177	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	11432800	62202177	823343	620	98854											
CYYR1	116159	broad.mit.edu	37	chr21	27852651	27852651	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgcccacgcgggtcgcccTgtggttcttcatgcacatgc	12	14	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27852651	A	A	27852651	3	1	100	1	0	0	0	0	1	0	0	0	4244	1579	55	5	198	5	CYYR1	21	27852651	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08		27852651	20277244	621	98855											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744152	31744152	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccataacccagggatctgAcaccactggacccacagccc	7	17	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31744152	T	T	31744152	3	4	100	1	0	0	0	0	1	0	0	0	8594	275	10	5	151	5	KRTAP13-2	21	31744152	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	3891501	31744152	16385743	622	98856											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31914169	31914169	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatggtgtcagggactagaGattcagttcaatgctaatga	11	6	4	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31914169	A	A	31914169	1	1	100	0	1	0	0	0	0	0	0	0	8604	957	33	4		4	KRTAP19-6	21	31914169	5'UTR	SNP	G	TCGA-38-4629-01A-02D-1265-08	170017	31914169	16215726	623	98857											
DOPEY2	9980	broad.mit.edu	37	chr21	37584192	37584192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatagagctttgcagaccaGcaaggaagggctgcgtgtca	14	8	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37584192	T	T	37584192	1	4	100	0	1	0	0	0	0	0	0	0	4748	986	34	3		3	DOPEY2	21	37584192	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5670023	37584192	10545703	624	98858											
DYRK1A	1859	broad.mit.edu	37	chr21	38884551	38884551	+	Frame_Shift_Del	DEL	C	-	-													ttcttcctcgacatcttcctCctctactggtaaccaaggca							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38884551	-	-	38884551	7	5	100	1	0	1	0	1	0	0	0	0	4894	855	30	0	2135	0	DYRK1A	21	38884551	Frame_Shift_Del	DEL	C	TCGA-38-4629-01A-02D-1265-08	1300359	38884551	9245344	625	98859											
ETS2	2114	broad.mit.edu	37	chr21	40186898	40186898	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggaacatctggagcaaatGatcaaaggtaccagctgaac	11	8	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40186898	A	A	40186898	3	1	100	1	0	0	0	0	1	0	0	0	5318	1290	45	4	512	4	ETS2	21	40186898	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	1302347	40186898	7942997	626	98860											
ICOSLG	23308	broad.mit.edu	37	chr21	45655295	45655295	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaagaagacggtgtcaTtctgcagagcctggtccagc	12	10	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45655295	C	C	45655295	3	2	100	1	0	0	0	0	1	0	0	0	7557	1493	52	5	367	5	ICOSLG	21	45655295	Missense_Mutation	SNP	T	TCGA-38-4629-01A-02D-1265-08	5468397	45655295	2474600	627	98861											
KRTAP10-7	386675	broad.mit.edu	37	chr21	46021524	46021524	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgtcccctcctgctgcGcccccacctcctcctgccag	7	24	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46021524	A	A	46021524	3	1	100	1	0	0	0	0	1	0	0	0	8585	1087	38	4	994	4	KRTAP10-7	21	46021524	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	366229	46021524	2108371	628	98862											
KRTAP10-11	386678	broad.mit.edu	37	chr21	46067109	46067109	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcctctgccaccccgtgtGcaggtccacctgctgtgtgc	10	18	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46067109	C	C	46067109	3	2	100	1	0	0	0	0	1	0	0	0	8578	1319	46	4	736	4	KRTAP10-11	21	46067109	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	45585	46067109	2062786	629	98863											
SUMO3	6612	broad.mit.edu	37	chr21	46228916	46228916	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaatggcagttaccccgCacaaatcggaagtcgccctg	9	15	0	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46228916	T	T	46228916	1	4	100	0	1	0	0	0	0	0	0	0	15507	725	25	4		4	SUMO3	21	46228916	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	161807	46228916	1900979	630	98864											
PCNT	5116	broad.mit.edu	37	chr21	47831066	47831066	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggacattcggaagtggatAcatttaatttgcctctgaaa	10	6	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47831066	T	T	47831066	1	4	100	0	1	0	0	0	0	0	0	0	11684	406	14	5		5	PCNT	21	47831066	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	1602150	47831066	298829	631	98865											
SLC25A18	83733	broad.mit.edu	37	chr22	18063888	18063888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgacttggccaagactcgcCtgcagaaccagcatgggaaa	11	12	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18063888	A	A	18063888	3	1	100	1	0	0	0	0	1	0	0	0	14594	680	24	2	112	2	SLC25A18	22	18063888	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08		18063888	33240678	632	98866											
GSC2	2928	broad.mit.edu	37	chr22	19136549	19136549	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgacgccgggcaggagcctCgcggaagccgacgcgcgctt	16	14	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19136549	T	T	19136549	2	4	100	1	0	0	0	0	0	0	0	1	6881	871	31	4		4	GSC2	22	19136549	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08	1072661	19136549	32168017	633	98867											
MYO18B	84700	broad.mit.edu	37	chr22	26299684	26299684	+	Frame_Shift_Del	DEL	G	-	-													ctgctggggtcaccctctctGggggaaaattgcgttgctgg							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26299684	-	-	26299684	7	5	100	1	0	1	0	1	0	0	0	0	10160	1335	47	0	5152	0	MYO18B	22	26299684	Frame_Shift_Del	DEL	G	TCGA-38-4629-01A-02D-1265-08	7163135	26299684	25004882	634	98868											
TMPRSS6	164656	broad.mit.edu	37	chr22	37470786	37470786	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgtggaggcaggcagggcGccattaggccatgcgtagcc	16	12	0	0	rs12484305		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37470786	A	A	37470786	1	1	100	0	1	0	0	0	0	0	0	0	16374	1102	38	4		4	TMPRSS6	22	37470786	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	11171102	37470786	13833780	635	98869											
ELFN2	114794	broad.mit.edu	37	chr22	37771193	37771193	+	Frame_Shift_Del	DEL	G	-	-													gacaaagaggaactgcaggcGgctcatgcctcgcagcatgc							TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37771193	-	-	37771193	7	5	100	1	0	1	0	1	0	0	0	0	5100	1116	39	0	2084	0	ELFN2	22	37771193	Frame_Shift_Del	DEL	G	TCGA-38-4629-01A-02D-1265-08	300407	37771193	13533373	636	98870											
SCUBE1	80274	broad.mit.edu	37	chr22	43605996	43605996	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagaaccgcagcgagacGggggtgcacacgcagctgag	17	11	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43605996	A	A	43605996	1	1	100	0	1	0	0	0	0	0	0	0	14057	1131	39	4		4	SCUBE1	22	43605996	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	5834803	43605996	7698570	637	98871											
FAM118A	55007	broad.mit.edu	37	chr22	45718430	45718430	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatggaaacactggggcatGagagaacctcgagggccatt	13	8	0	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45718430	A	A	45718430	1	1	100	0	1	0	0	0	0	0	0	0	5457	1305	45	4		4	FAM118A	22	45718430	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2112434	45718430	5586136	638	98872											
SAPS2	9701	broad.mit.edu	37	chr22	50832575	50832575	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgcttcaagtatgtaccaAagctgtgacgggccagtacg	11	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50832575	T	T	50832575	1	4	100	0	1	0	0	0	0	0	0	0	13949	29	1	5		5	SAPS2	22	50832575	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	5114145	50832575	471991	639	98873											
NCAPH2	29781	broad.mit.edu	37	chr22	50956587	50956587	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtgaggtcctggccagcCggaaggatttcaggatgaac	16	8	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50956587	T	T	50956587	3	4	100	1	0	0	0	0	1	0	0	0	10305	643	23	4	552	4	NCAPH2	22	50956587	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	124012	50956587	347979	640	98874											
ARSE	415	broad.mit.edu	37	chrX	2876491	2876491	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaactgtcagagactgcGtcatgctcctgtccatctca	7	14	3	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2876491	A	A	2876491	1	1	100	0	1	0	0	0	0	0	0	0	994	1160	40	4		4	ARSE	23	2876491	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08		2876491	152394069	641	98875											
PRKX	5613	broad.mit.edu	37	chrX	3530236	3530236	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accttccagatgtgagctccTgtcctcagaaattcttgaag	8	11	2	4			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3530236	A	A	3530236	1	1	100	0	1	0	0	0	0	0	0	0	12633	1595	55	5		5	PRKX	23	3530236	3'UTR	SNP	T	TCGA-38-4629-01A-02D-1265-08	653745	3530236	151740324	642	98876											
GLRA2	2742	broad.mit.edu	37	chrX	14622549	14622549	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgttgaaatgactccctGcttgttttaaccaatgacct	6	11	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14622549	T	T	14622549	1	4	100	0	1	0	0	0	0	0	0	0	6519	1334	46	3		3	GLRA2	23	14622549	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	11092313	14622549	140648011	643	98877											
DMD	1756	broad.mit.edu	37	chrX	32827695	32827695	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttgtgtggctgactgctgGcaaaccacactattccagtc	10	12	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32827695	A	A	32827695	2	1	100	1	0	0	0	0	0	0	0	1	4620	1195	42	4		4	DMD	23	32827695	Silent	SNP	G	TCGA-38-4629-01A-02D-1265-08	18205146	32827695	122442865	644	98878											
RPGR	6103	broad.mit.edu	37	chrX	38132728	38132728	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgcatcatcaagcatgtAtcctacaattggatcattca	5	10	5	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38132728	G	G	38132728	3	3	100	1	0	0	0	0	1	0	0	0	13659	449	16	5	303	5	RPGR	23	38132728	Missense_Mutation	SNP	A	TCGA-38-4629-01A-02D-1265-08	5305033	38132728	117137832	645	98879											
PHF16	9767	broad.mit.edu	37	chrX	46913645	46913645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagaccatcctagatgaggGagacgaagtgaagttcaagt	13	6	1	5			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46913645	T	T	46913645	3	4	100	1	0	0	0	0	1	0	0	0	11922	1174	41	3	1088	3	PHF16	23	46913645	Missense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	8780917	46913645	108356915	646	98880											
ITIH5L	347365	broad.mit.edu	37	chrX	54780336	54780336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgccctgtactcaaacaGgggagccatgggggtgactg	15	10	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54780336	T	T	54780336	1	4	100	0	1	0	0	0	0	0	0	0	7978	1015	35	2		2	ITIH5L	23	54780336	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	7866691	54780336	100490224	647	98881											
HEPH	9843	broad.mit.edu	37	chrX	65479883	65479883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttttggttcctgaaagCtctaagatgatttttatacc	6	6	1	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65479883	A	A	65479883	1	1	100	0	1	0	0	0	0	0	0	0	7121	812	28	3		3	HEPH	23	65479883	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	10699547	65479883	89790677	648	98882											
DACH2	117154	broad.mit.edu	37	chrX	86070992	86070992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccctttaaatggaatcaGgaaccacctaattgtatatt	5	8	1	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86070992	T	T	86070992	1	4	100	0	1	0	0	0	0	0	0	0	4254	1015	35	2		2	DACH2	23	86070992	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	20591109	86070992	69199568	649	98883											
KLHL4	56062	broad.mit.edu	37	chrX	86868947	86868947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagttccatgttataaacCacgcagagcaaactcttcgt	7	11	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86868947	A	A	86868947	3	1	100	1	0	0	0	0	1	0	0	0	8462	594	21	2	496	2	KLHL4	23	86868947	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	797955	86868947	68401613	650	98884											
KLHL4	56062	broad.mit.edu	37	chrX	86869414	86869414	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttattgactcatttaaattcCtacaaatatttcctatttcc	1	9	1	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86869414	G	G	86869414	1	3	100	0	1	0	0	0	0	0	0	0	8462	696	24	4		4	KLHL4	23	86869414	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	467	86869414	68401146	651	98885											
NXF3	56000	broad.mit.edu	37	chrX	102332504	102332504	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcacttctgaggcaactgGtagttcatcccccagactgg	9	13	3	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102332504	A	A	102332504	1	1	100	0	1	0	0	0	0	0	0	0	10880	1276	44	4		4	NXF3	23	102332504	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	15463090	102332504	52938056	652	98886											
COL4A6	1288	broad.mit.edu	37	chrX	107438145	107438145	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacactggatacccatgttCttgagtgaaaagaaaagagg	11	6	1	5			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107438145	T	T	107438145	1	4	100	0	1	0	0	0	0	0	0	0	3727	928	32	4		4	COL4A6	23	107438145	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	5105641	107438145	47832415	653	98887											
IRS4	8471	broad.mit.edu	37	chrX	107977956	107977956	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagagcactggtttcctcctGagccctggccatttgagccc	10	14	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107977956	T	T	107977956	4	4	100	1	0	0	0	0	0	1	0	0	7912	1294	45	3	2158	3	IRS4	23	107977956	Nonsense_Mutation	SNP	G	TCGA-38-4629-01A-02D-1265-08	539811	107977956	47292604	654	98888											
DCX	1641	broad.mit.edu	37	chrX	110644577	110644577	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctaaggcaagaaataagtGattaggtgattagtttaata	9	4	0	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110644577	T	T	110644577	1	4	100	0	1	0	0	0	0	0	0	0	4351	1305	45	3		3	DCX	23	110644577	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	2666621	110644577	44625983	655	98889											
ODZ1	10178	broad.mit.edu	37	chrX	123556615	123556615	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaattttagcaacattggtGatgtctcggaaagtggaggg	14	4	1	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123556615	C	C	123556615	1	2	100	0	1	0	0	0	0	0	0	0	10929	1305	45	4		4	ODZ1	23	123556615	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	12912038	123556615	31713945	656	98890											
IGSF1	3547	broad.mit.edu	37	chrX	130411723	130411723	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaagattggacacaggctCtcaggaccagcagcaaagtt	10	10	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130411723	A	A	130411723	1	1	100	0	1	0	0	0	0	0	0	0	7666	928	32	3		3	IGSF1	23	130411723	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	6855108	130411723	24858837	657	98891											
IGSF1	3547	broad.mit.edu	37	chrX	130419503	130419503	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtactgtctagggagcagcaGaggagagctctactttaatt	12	7	2	2			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130419503	T	T	130419503	1	4	100	0	1	0	0	0	0	0	0	0	7666	957	33	3		3	IGSF1	23	130419503	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	7780	130419503	24851057	658	98892											
AFF2	2334	broad.mit.edu	37	chrX	147919249	147919249	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagagcaccttttccatcCcaggacaggtcagttctctt	8	13	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147919249	T	T	147919249	3	4	100	1	0	0	0	0	1	0	0	0	357	623	22	4	1238	4	AFF2	23	147919249	Missense_Mutation	SNP	C	TCGA-38-4629-01A-02D-1265-08	17499746	147919249	7351311	659	98893											
PASD1	139135	broad.mit.edu	37	chrX	150839503	150839503	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaccataagtaattcctcCccacagccattacagccatc	4	15	0	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150839503	G	G	150839503	1	3	100	0	1	0	0	0	0	0	0	0	11565	638	22	4		4	PASD1	23	150839503	Intron	SNP	C	TCGA-38-4629-01A-02D-1265-08	2920254	150839503	4431057	660	98894											
CSAG1	158511	broad.mit.edu	37	chrX	151904630	151904630	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtcaagctattttttcctGaatatgtcagtatacttcga	6	7	2	1			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151904630	T	T	151904630	1	4	100	0	1	0	0	0	0	0	0	0	3958	1305	45	3		3	CSAG1	23	151904630	Intron	SNP	G	TCGA-38-4629-01A-02D-1265-08	1065127	151904630	3365930	661	98895											
FAM50A	9130	broad.mit.edu	37	chrX	153674682	153674682	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggccccacatagggcacacAggtggctctgggtcaaggaa	14	11	2	0			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153674682	T	T	153674682	1	4	100	0	1	0	0	0	0	0	0	0	5628	203	7	5		5	FAM50A	23	153674682	Intron	SNP	A	TCGA-38-4629-01A-02D-1265-08	1770052	153674682	1595878	662	98896											
KDM5D	8284	broad.mit.edu	37	chrY	21869168	21869168	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctgtcgcaacagagcagtCacatcttcagaggccagagc	11	12	3	3			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21869168	T	T	21869168	2	4	100	1	0	0	0	0	0	0	0	1	8206	813	29	4		4	KDM5D	24	21869168	Silent	SNP	C	TCGA-38-4629-01A-02D-1265-08		21869168	37504398	663	98897											
PEX14	5195	broad.mit.edu	37	chr1	10687493	10687493	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagctctggggcatgggaGgggcatgacgcccaccccca	17	13	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10687493	A	A	10687493	1	1	101	0	1	0	0	0	0	0	0	0	11837	1015	35	4		4	PEX14	1	10687493	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08		10687493	238563128	1	98898											
MAD2L2	10459	broad.mit.edu	37	chr1	11740547	11740547	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgcaggggggcacaagcCggtggcgcgctcgaggaagc	18	12	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11740547	T	T	11740547	1	4	101	0	1	0	0	0	0	0	0	0	9238	667	23	4		4	MAD2L2	1	11740547	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	1053054	11740547	237510074	2	98899											
MFN2	9927	broad.mit.edu	37	chr1	12064925	12064925	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggactgggtcgaaacatgtCtgaccgctgctccacggcca	12	13	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12064925	G	G	12064925	3	3	101	1	0	0	0	0	1	0	0	0	9617	913	32	4	1482	4	MFN2	1	12064925	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	324378	12064925	237185696	3	98900											
FBLIM1	54751	broad.mit.edu	37	chr1	16111175	16111175	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagtgcccgctgggcagtGaacagaccactagccccggc	14	14	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16111175	A	A	16111175	1	1	101	0	1	0	0	0	0	0	0	0	5754	1305	45	4		4	FBLIM1	1	16111175	3'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08	4046250	16111175	233139446	4	98901											
SPEN	23013	broad.mit.edu	37	chr1	16258747	16258747	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaaagggaaaaaatgaaccGaaggtggatgctacacgtcc	11	7	0	1	rs146430628		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16258747	A	A	16258747	2	1	101	1	0	0	0	0	0	0	0	1	15156	1045	37	4		4	SPEN	1	16258747	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	147572	16258747	232991874	5	98902											
LCK	3932	broad.mit.edu	37	chr1	32740258	32740258	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccaggctggagaggctgaGagcagagcaggggggaaggg	21	6	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32740258	A	A	32740258	1	1	101	0	1	0	0	0	0	0	0	0	8748	957	33	4		4	LCK	1	32740258	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	16481511	32740258	216510363	6	98903											
LCK	3932	broad.mit.edu	37	chr1	32741853	32741853	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctagtccacttcacctaGatgggggcttggagaagtgg	14	8	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32741853	C	C	32741853	1	2	101	0	1	0	0	0	0	0	0	0	8748	957	33	4		4	LCK	1	32741853	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	1595	32741853	216508768	7	98904											
INPP5B	3633	broad.mit.edu	37	chr1	38348712	38348712	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgggtgggaaaatggctCaactgttcggaaaatttttt	13	4	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38348712	T	T	38348712	1	4	101	0	1	0	0	0	0	0	0	0	7825	841	29	4		4	INPP5B	1	38348712	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	5606859	38348712	210901909	8	98905											
NRD1	4898	broad.mit.edu	37	chr1	52306294	52306294	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatccaagtaaaagtacaAacacacacacacacaactat	3	11	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52306294	C	C	52306294	1	2	101	0	1	0	0	0	0	0	0	0	10740	29	1	5		5	NRD1	1	52306294	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	13957582	52306294	196944327	9	98906											
ZYG11B	79699	broad.mit.edu	37	chr1	53236866	53236866	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatatcacgattacagacaTtatcagtgggcttggcagta	10	7	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53236866	G	G	53236866	3	3	101	1	0	0	0	0	1	0	0	0	18382	1493	52	5	381	5	ZYG11B	1	53236866	Missense_Mutation	SNP	T	TCGA-38-4630-01A-01D-1265-08	930572	53236866	196013755	10	98907											
KANK4	163782	broad.mit.edu	37	chr1	62738935	62738935	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtgagcctgggccgagTaggccgacagcagcaggttg	19	9	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62738935	A	A	62738935	3	1	101	1	0	0	0	0	1	0	0	0	8049	1638	57	5	1178	5	KANK4	1	62738935	Missense_Mutation	SNP	T	TCGA-38-4630-01A-01D-1265-08	9502069	62738935	186511686	11	98908											
LRRC7	57554	broad.mit.edu	37	chr1	70502363	70502363	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattttcagcaactttttAaaaaatggaatcttcttaat	3	5	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70502363	T	T	70502363	1	4	101	0	1	0	0	0	0	0	0	0	9107	377	13	5		5	LRRC7	1	70502363	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	7763428	70502363	178748258	12	98909											
LRRC7	57554	broad.mit.edu	37	chr1	70502405	70502405	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggaattgtattcggcacaCaagtggcatagaagacagaa	11	6	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70502405	G	G	70502405	1	3	101	0	1	0	0	0	0	0	0	0	9107	493	17	4		4	LRRC7	1	70502405	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	42	70502405	178748216	13	98910											
TNNI3K	51086	broad.mit.edu	37	chr1	74808404	74808404	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaatttcctttatgattatCattaactggcaatttccagg	5	7	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74808404	T	T	74808404	1	4	101	0	1	0	0	0	0	0	0	0	16452	841	29	4		4	TNNI3K	1	74808404	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	4305999	74808404	174442217	14	98911											
MSH4	4438	broad.mit.edu	37	chr1	76349621	76349621	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaacagtttggagcagattCtgttacctaaaagtataaca	8	6	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76349621	A	A	76349621	1	1	101	0	1	0	0	0	0	0	0	0	9966	928	32	3		3	MSH4	1	76349621	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	1541217	76349621	172901000	15	98912											
DPYD	1806	broad.mit.edu	37	chr1	98012718	98012718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttaaggcttactgaaacCtttcaagtatgggatggtgc	11	6	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98012718	A	A	98012718	1	1	101	0	1	0	0	0	0	0	0	0	4785	696	24	2		2	DPYD	1	98012718	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	21663097	98012718	151237903	16	98913											
COL11A1	1301	broad.mit.edu	37	chr1	103453303	103453303	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaacttctccctgaggCacagaataacaacattctta	5	12	2	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103453303	T	T	103453303	1	4	101	0	1	0	0	0	0	0	0	0	3699	725	25	4		4	COL11A1	1	103453303	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	5440585	103453303	145797318	17	98914											
TBX15	6913	broad.mit.edu	37	chr1	119467373	119467373	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagagaatcagggtgtatatAaactcttgggggcacagggg	15	5	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119467373	T	T	119467373	3	4	101	1	0	0	0	0	1	0	0	0	15774	362	13	5	1239	5	TBX15	1	119467373	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08	16014070	119467373	129783248	18	98915											
S100A5	6276	broad.mit.edu	37	chr1	153509702	153509702	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggagggcagggggccaaaGagggtctgtgagaggagcag	22	5	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153509702	C	C	153509702	1	2	101	0	1	0	0	0	0	0	0	0	13892	957	33	4		4	S100A5	1	153509702	3'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08	34042329	153509702	95740919	19	98916											
SNAPIN	23557	broad.mit.edu	37	chr1	153633647	153633647	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagcctttcacagtggtTaagattccaaaccttccttg	6	12	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153633647	A	A	153633647	1	1	101	0	1	0	0	0	0	0	0	0	14953	1769	61	5		5	SNAPIN	1	153633647	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	123945	153633647	95616974	20	98917											
PKLR	5313	broad.mit.edu	37	chr1	155270024	155270024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagaaggcagtgcccagctCctgggtcagttgggccacac	14	12	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155270024	T	T	155270024	3	4	101	1	0	0	0	0	1	0	0	0	12071	864	30	4	1616	4	PKLR	1	155270024	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	1636377	155270024	93980597	21	98918											
KIAA0907	22889	broad.mit.edu	37	chr1	155886524	155886524	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattagtcatatgaatgggtCcatgctatgagcagaaaaat	9	5	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155886524	T	T	155886524	3	4	101	1	0	0	0	0	1	0	0	0	8269	855	30	4	411	4	KIAA0907	1	155886524	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	616500	155886524	93364097	22	98919											
CEP350	9857	broad.mit.edu	37	chr1	180003196	180003196	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagccagcagaacaacgacaGagaacatggctccaatacca	8	13	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180003196	C	C	180003196	3	2	101	1	0	0	0	0	1	0	0	0	3284	943	33	4	3983	4	CEP350	1	180003196	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	24116672	180003196	69247425	23	98920											
SMG7	9887	broad.mit.edu	37	chr1	183484896	183484896	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcattctatggaatatattTagagcaggttttgccttggg	11	5	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183484896	G	G	183484896	1	3	101	0	1	0	0	0	0	0	0	0	14912	1769	61	5		5	SMG7	1	183484896	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	3481700	183484896	65765725	24	98921											
PLA2G4A	5321	broad.mit.edu	37	chr1	186908254	186908254	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttacttctcacaccacaGaaagttaaaagatatgttga	5	8	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186908254	T	T	186908254	3	4	101	1	0	0	0	0	1	0	0	0	12096	933	33	3	840	3	PLA2G4A	1	186908254	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	3423358	186908254	62342367	25	98922											
ASPM	259266	broad.mit.edu	37	chr1	197074232	197074232	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagatgtaacagcaattatCattcttatcctagattgcag	6	7	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197074232	T	T	197074232	3	4	101	1	0	0	0	0	1	0	0	0	1060	826	29	4	6328	4	ASPM	1	197074232	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	10165978	197074232	52176389	26	98923											
TIMM17A	10440	broad.mit.edu	37	chr1	201926494	201926494	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaagcaatcaaaggttttCgcaattctccagtggtaagt	8	8	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201926494	T	T	201926494	3	4	101	1	0	0	0	0	1	0	0	0	16031	884	31	4	118	4	TIMM17A	1	201926494	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	4852262	201926494	47324127	27	98924											
CYB5R1	51706	broad.mit.edu	37	chr1	202931531	202931531	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttcctgcaggtactatccaGatttcagctctagatgtaac	8	10	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202931531	C	C	202931531	1	2	101	0	1	0	0	0	0	0	0	0	4159	957	33	4		4	CYB5R1	1	202931531	3'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08	1005037	202931531	46319090	28	98925											
C1orf115	79762	broad.mit.edu	37	chr1	220870013	220870013	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcatcggcctgcaaggcttCgctgcagcctactccgcccc	10	18	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220870013	T	T	220870013	2	4	101	1	0	0	0	0	0	0	0	1	2008	883	31	4		4	C1orf115	1	220870013	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	17938482	220870013	28380608	29	98926											
RYR2	6262	broad.mit.edu	37	chr1	237936919	237936919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatccaagtggcaaaacaaGtctttaacactcttacagag	6	10	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237936919	T	T	237936919	3	4	101	1	0	0	0	0	1	0	0	0	13880	1029	36	3	12092	3	RYR2	1	237936919	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	17066906	237936919	11313702	30	98927											
ADI1	55256	broad.mit.edu	37	chr2	3517754	3517754	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtcagcatccagctaaaaGagttaacccaccaaaaacaa	5	11	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3517754	C	C	3517754	1	2	101	0	1	0	0	0	0	0	0	0	315	957	33	4		4	ADI1	2	3517754	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08		3517754	239681619	31	98928											
NBAS	51594	broad.mit.edu	37	chr2	15542280	15542280	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaataagactggcatactGtgtattcttacccatatcct	5	11	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15542280	C	C	15542280	1	2	101	0	1	0	0	0	0	0	0	0	10280	1392	48	4		4	NBAS	2	15542280	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	12024526	15542280	227657093	32	98929											
BIRC6	57448	broad.mit.edu	37	chr2	32715142	32715142	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctcacagtgttagcttgGtatcccaatactttgctccg	7	11	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32715142	C	C	32715142	3	2	101	1	0	0	0	0	1	0	0	0	1444	1270	44	4	8300	4	BIRC6	2	32715142	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	17172862	32715142	210484231	33	98930											
NRXN1	9378	broad.mit.edu	37	chr2	51206467	51206467	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caatgtgacagcaattccatCcctattctcagcacagtatc	5	13	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51206467	A	A	51206467	1	1	101	0	1	0	0	0	0	0	0	0	10760	870	30	3		3	NRXN1	2	51206467	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	18491325	51206467	191992906	34	98931											
CCDC142	84865	broad.mit.edu	37	chr2	74710143	74710143	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcccctaacaaacatggCcgcccactctgtcccacccc	5	21	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74710143	T	T	74710143	1	4	101	0	1	0	0	0	0	0	0	0	2802	754	26	4		4	CCDC142	2	74710143	5'UTR	SNP	C	TCGA-38-4630-01A-01D-1265-08	23503676	74710143	168489230	35	98932											
ST3GAL5	8869	broad.mit.edu	37	chr2	86067632	86067632	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacattgggggctgcaatttCatacatcacataattttata	6	7	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86067632	A	A	86067632	1	1	101	0	1	0	0	0	0	0	0	0	15336	841	29	3		3	ST3GAL5	2	86067632	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	11357489	86067632	157131741	36	98933											
RNF103	7844	broad.mit.edu	37	chr2	86831831	86831831	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaagccagtgtggttgtaTtggaatatctcaacaatttt	9	5	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86831831	G	G	86831831	3	3	101	1	0	0	0	0	1	0	0	0	13534	1493	52	5	868	5	RNF103	2	86831831	Missense_Mutation	SNP	T	TCGA-38-4630-01A-01D-1265-08	764199	86831831	156367542	37	98934											
SULT1C3	442038	broad.mit.edu	37	chr2	108872195	108872195	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtaccctctttcaggtgActctaacaataagcacctct	6	12	4	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108872195	C	C	108872195	1	2	101	0	1	0	0	0	0	0	0	0	15496	290	10	5		5	SULT1C3	2	108872195	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	22040364	108872195	134327178	38	98935											
NPHP1	4867	broad.mit.edu	37	chr2	110941954	110941954	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttctcagaggagcatctcGtgctcctcactgaggcacct	9	14	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110941954	A	A	110941954	1	1	101	0	1	0	0	0	0	0	0	0	10674	1160	40	4		4	NPHP1	2	110941954	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	2069759	110941954	132257419	39	98936											
ANAPC1	64682	broad.mit.edu	37	chr2	112625621	112625621	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccagatttacaaacaagtgGagttatttcatctagtgggt	9	6	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112625621	C	C	112625621	3	2	101	1	0	0	0	0	1	0	0	0	598	1174	41	4	5338	4	ANAPC1	2	112625621	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	1683667	112625621	130573752	40	98937											
CCNT2	905	broad.mit.edu	37	chr2	135710263	135710263	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaacgcctaataggttgaaGaagattcgaaactggagggt	12	5	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135710263	T	T	135710263	3	4	101	1	0	0	0	0	1	0	0	0	2965	933	33	3	786	3	CCNT2	2	135710263	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	23084642	135710263	107489110	41	98938											
LCT	3938	broad.mit.edu	37	chr2	136558028	136558028	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtctcaaactcctagcctCaagaaatcctcctgcctcag	5	15	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136558028	T	T	136558028	1	4	101	0	1	0	0	0	0	0	0	0	8765	841	29	4		4	LCT	2	136558028	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	847765	136558028	106641345	42	98939											
LRP1B	53353	broad.mit.edu	37	chr2	141200287	141200287	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgtttaagacagtttatcGaaaaatgtattgtctttaaa	6	3	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141200287	A	A	141200287	1	1	101	0	1	0	0	0	0	0	0	0	9042	1073	37	4		4	LRP1B	2	141200287	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	4642259	141200287	101999086	43	98940											
GALNT5	11227	broad.mit.edu	37	chr2	158115453	158115453	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agttcactgtcaattcaaatCgcttaaggaagcaatctatt	6	8	4	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158115453	T	T	158115453	3	4	101	1	0	0	0	0	1	0	0	0	6278	884	31	4	861	4	GALNT5	2	158115453	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	16915166	158115453	85083920	44	98941											
XIRP2	129446	broad.mit.edu	37	chr2	168100783	168100783	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaacaatttaattaaatttGatgcatcacataaaatagag	4	5	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168100783	A	A	168100783	3	1	101	1	0	0	0	0	1	0	0	0	17557	1290	45	4	2911	4	XIRP2	2	168100783	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	9985330	168100783	75098590	45	98942											
ITGA4	3676	broad.mit.edu	37	chr2	182391940	182391940	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggtgacttgtaaatatgCtataatccagactatagaaa	7	6	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182391940	T	T	182391940	1	4	101	0	1	0	0	0	0	0	0	0	7948	812	28	4		4	ITGA4	2	182391940	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	14291157	182391940	60807433	46	98943											
TFPI	7035	broad.mit.edu	37	chr2	188343416	188343416	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaatattaacataggcatGaaatgctatccaatcctaga	5	8	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188343416	A	A	188343416	1	1	101	0	1	0	0	0	0	0	0	0	15931	1294	45	4		4	TFPI	2	188343416	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	5951476	188343416	54855957	47	98944											
SDPR	8436	broad.mit.edu	37	chr2	192711260	192711260	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcactgcctatccatgCgctctttgaccgcgcgcgtg	12	15	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192711260	T	T	192711260	3	4	101	1	0	0	0	0	1	0	0	0	14083	768	27	4	893	4	SDPR	2	192711260	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	4367844	192711260	50488113	48	98945											
KLF7	8609	broad.mit.edu	37	chr2	207945807	207945808	+	3'UTR	INS	-	TG	TG													tgtgtgtgtgtgtgtgtgtgINStacagaggtttataagtgag					rs59847589		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	207945808	TG	TG	207945807	6	5	101	0	1	1	1	0	0	0	0	0	8422	1392	48	0		0	KLF7	2	207945807	3'UTR	INS	-	TCGA-38-4630-01A-01D-1265-08	15234547	207945807	35253566	49	98946											
PIKFYVE	200576	broad.mit.edu	37	chr2	209141397	209141397	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttgtatatagatactaggGactgttaacaaggttgcttt	10	4	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209141397	T	T	209141397	1	4	101	0	1	0	0	0	0	0	0	0	12019	1189	41	3		3	PIKFYVE	2	209141397	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	1195590	209141397	34057976	50	98947											
ACSL3	2181	broad.mit.edu	37	chr2	223786028	223786028	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatagcaaaccattgccctCagatattgcagtaatcatgt	6	10	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223786028	G	G	223786028	4	3	101	1	0	0	0	0	0	1	0	0	178	838	29	4	854	4	ACSL3	2	223786028	Nonsense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	14644631	223786028	19413345	51	98948											
COL4A4	1286	broad.mit.edu	37	chr2	227920542	227920542	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagggaggcatcattaaggGaaggacaaagccagactaac	12	8	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227920542	T	T	227920542	1	4	101	0	1	0	0	0	0	0	0	0	3725	1189	41	3		3	COL4A4	2	227920542	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	4134514	227920542	15278831	52	98949											
HTR2B	3357	broad.mit.edu	37	chr2	231978590	231978590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcggttgaaaagagaaCgtcaagaaataaccaggcag	13	6	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231978590	A	A	231978590	3	1	101	1	0	0	0	0	1	0	0	0	7512	536	19	3	1047	3	HTR2B	2	231978590	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	4058048	231978590	11220783	53	98950											
EDEM1	9695	broad.mit.edu	37	chr3	5251931	5251931	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggaaaagtacacaaaagtCaagtcagttttctaagttcc	7	8	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5251931	G	G	5251931	2	3	101	1	0	0	0	0	0	0	0	1	4951	813	29	4		4	EDEM1	3	5251931	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08		5251931	192770499	54	98951											
RAF1	5894	broad.mit.edu	37	chr3	12629283	12629284	+	Intron	INS	-	T	T													ccctgtgctgttcagcctggINSttcacatcactgcttacctg							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12629284	T	T	12629283	6	5	101	0	1	1	1	0	0	0	0	0	13110	1276	44	0		0	RAF1	3	12629283	Intron	INS	-	TCGA-38-4630-01A-01D-1265-08	7377352	12629283	185393147	55	98952											
SH3BP5	9467	broad.mit.edu	37	chr3	15297858	15297858	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtattgacaattctgccCtgtctcctatagaaatacaa	6	9	2	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15297858	T	T	15297858	1	4	101	0	1	0	0	0	0	0	0	0	14360	696	24	4		4	SH3BP5	3	15297858	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	2668575	15297858	182724572	56	98953											
TBC1D5	9779	broad.mit.edu	37	chr3	17550017	17550017	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaatgcctacttcttgttCttctggctgcagaggatgtc	10	10	4	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17550017	T	T	17550017	3	4	101	1	0	0	0	0	1	0	0	0	15745	922	32	4	2491	4	TBC1D5	3	17550017	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	2252159	17550017	180472413	57	98954											
TBC1D5	9779	broad.mit.edu	37	chr3	17747625	17747625	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtccagcaagtcgggcttGaggcaaaggctgcagttgat	14	8	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17747625	C	C	17747625	1	2	101	0	1	0	0	0	0	0	0	0	15745	1305	45	4		4	TBC1D5	3	17747625	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	197608	17747625	180274805	58	98955											
DLEC1	9940	broad.mit.edu	37	chr3	38158602	38158602	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacagcaaggtgagctcttCcggcctggggtgggggccgc	19	11	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38158602	T	T	38158602	1	4	101	0	1	0	0	0	0	0	0	0	4592	870	30	4		4	DLEC1	3	38158602	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	20410977	38158602	159863828	59	98956											
ZNF197	10168	broad.mit.edu	37	chr3	44684351	44684351	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgtggaaaagttttcattCgaagcaaaagcctcctctta	7	8	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44684351	T	T	44684351	4	4	101	1	0	0	0	0	0	1	0	0	17885	876	31	4	1747	4	ZNF197	3	44684351	Nonsense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	6525749	44684351	153338079	60	98957											
FYCO1	79443	broad.mit.edu	37	chr3	46009262	46009262	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttggctcacctgtgccaGctgggtctccaggaactgca	12	12	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46009262	A	A	46009262	2	1	101	1	0	0	0	0	0	0	0	1	6185	962	34	4		4	FYCO1	3	46009262	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	1324911	46009262	152013168	61	98958											
UBA7	7318	broad.mit.edu	37	chr3	49845953	49845953	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagcccctgtctcctgcactCttcttggagccctgtgccta	8	16	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49845953	G	G	49845953	1	3	101	0	1	0	0	0	0	0	0	0	16959	928	32	4		4	UBA7	3	49845953	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	3836691	49845953	148176477	62	98959											
MST1R	4486	broad.mit.edu	37	chr3	49940859	49940859	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actctcatttctgtcgccctCgtaggtcaccatggcctgta	8	14	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49940859	T	T	49940859	3	4	101	1	0	0	0	0	1	0	0	0	9985	893	31	4	4098	4	MST1R	3	49940859	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	94906	49940859	148081571	63	98960											
PTPRG	5793	broad.mit.edu	37	chr3	61728165	61728165	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcttgcccatggtgctctcGatatataaggcccggacatt	11	11	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61728165	A	A	61728165	1	1	101	0	1	0	0	0	0	0	0	0	12910	1073	37	4		4	PTPRG	3	61728165	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	11787306	61728165	136294265	64	98961											
TFG	10342	broad.mit.edu	37	chr3	100451281	100451281	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacacctgcattatttcccTtgtacttttaggccttactg	5	11	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100451281	A	A	100451281	1	1	101	0	1	0	0	0	0	0	0	0	15929	1624	56	5		5	TFG	3	100451281	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	38723116	100451281	97571149	65	98962											
ABI3BP	25890	broad.mit.edu	37	chr3	100617784	100617784	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattcaggagacatttagtaAgttgccatgattcgggtaaa	10	5	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100617784	T	T	100617784	1	4	101	0	1	0	0	0	0	0	0	0	91	87	3	5		5	ABI3BP	3	100617784	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	166503	100617784	97404646	66	98963											
ALCAM	214	broad.mit.edu	37	chr3	105243414	105243414	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccagtaccagaccatgttCtttagaaagaagactgaact	9	9	1	5			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105243414	T	T	105243414	1	4	101	0	1	0	0	0	0	0	0	0	487	928	32	4		4	ALCAM	3	105243414	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	4625630	105243414	92779016	67	98964											
BOC	91653	broad.mit.edu	37	chr3	112998030	112998030	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgggcatacagcgtcatctCaccctgcttccttcctcacg	8	16	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112998030	T	T	112998030	1	4	101	0	1	0	0	0	0	0	0	0	1487	841	29	4		4	BOC	3	112998030	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	7754616	112998030	85024400	68	98965											
BOC	91653	broad.mit.edu	37	chr3	112999311	112999311	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccaagtgaaattcaaactCtggactggggtagaaccttc	9	10	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112999311	G	G	112999311	1	3	101	0	1	0	0	0	0	0	0	0	1487	928	32	4		4	BOC	3	112999311	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	1281	112999311	85023119	69	98966											
BOC	91653	broad.mit.edu	37	chr3	113003079	113003079	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactccctgcctacgtccttCaaccctctgtggccaggagc	8	17	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113003079	T	T	113003079	1	4	101	0	1	0	0	0	0	0	0	0	1487	841	29	4		4	BOC	3	113003079	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	3768	113003079	85019351	70	98967											
PARP15	165631	broad.mit.edu	37	chr3	122353866	122353866	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgtcttttgttacctgcaGattgagaggatacagaatgc	10	6	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122353866	A	A	122353866	5	1	101	1	0	0	0	0	0	0	1	0	11553	956	33	4	1683	4	PARP15	3	122353866	Splice_Site	SNP	G	TCGA-38-4630-01A-01D-1265-08	9350787	122353866	75668564	71	98968											
ACAD9	28976	broad.mit.edu	37	chr3	128621404	128621404	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctccctgcaggtggccatGaacatcctcaacagcggccg	10	15	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128621404	C	C	128621404	3	2	101	1	0	0	0	0	1	0	0	0	111	1290	45	4	925	4	ACAD9	3	128621404	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	6267538	128621404	69401026	72	98969											
AMOTL2	51421	broad.mit.edu	37	chr3	134086503	134086503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcactggcccctccaCagcaggtggactgagggagc	14	14	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134086503	A	A	134086503	3	1	101	1	0	0	0	0	1	0	0	0	584	478	17	3	1497	3	AMOTL2	3	134086503	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	5465099	134086503	63935927	73	98970											
CEP70	80321	broad.mit.edu	37	chr3	138291785	138291785	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatagttacttttgtagaAtcaaaagaaacagaaattgg	7	4	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138291785	T	T	138291785	1	4	101	0	1	0	0	0	0	0	0	0	3289	116	4	5		5	CEP70	3	138291785	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	4205282	138291785	59730645	74	98971											
SLC9A9	285195	broad.mit.edu	37	chr3	143550916	143550916	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgtgctgacttatttctCttttgtatttatattcataa	5	5	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143550916	T	T	143550916	3	4	101	1	0	0	0	0	1	0	0	0	14835	913	32	4	1674	4	SLC9A9	3	143550916	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	5259131	143550916	54471514	75	98972											
HPS3	84343	broad.mit.edu	37	chr3	148858845	148858845	+	Missense_Mutation	SNP	G	C	C													agcttgagtcagatgattttGtcatctgccagaagcccctg							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148858845	C	C	148858845	3	2	101	1	0	0	0	0	1	0	0	0	7407	1377	48	4	764	4	HPS3	3	148858845	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	5307929	148858845	49163585	76	98973	427	2									
HPS3	84343	broad.mit.edu	37	chr3	148858854	148858854	+	Missense_Mutation	SNP	C	A	A													cagatgattttgtcatctgcCagaagcccctggaacttctt							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148858854	A	A	148858854	3	1	101	1	0	0	0	0	1	0	0	0	7407	595	21	2	773	2	HPS3	3	148858854	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	9	148858854	49163576	77	98974	427	2									
SELT	51714	broad.mit.edu	37	chr3	150344870	150344870	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgttcaaattcttgacaaTgaaatgaagctcaatgtgca	7	7	3	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150344870	A	A	150344870	3	1	101	1	0	0	0	0	1	0	0	0	14135	1461	51	5	555	5	SELT	3	150344870	Missense_Mutation	SNP	T	TCGA-38-4630-01A-01D-1265-08	1486016	150344870	47677560	78	98975											
MED12L	116931	broad.mit.edu	37	chr3	151101513	151101513	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgataacataaagcaatggGgtgttctttctgttttacag	9	5	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151101513	C	C	151101513	1	2	101	0	1	0	0	0	0	0	0	0	9522	1247	43	4		4	MED12L	3	151101513	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	756643	151101513	46920917	79	98976											
MFSD1	64747	broad.mit.edu	37	chr3	158538125	158538125	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacttgggaagtgagtattCtctatgtttccattatttct	9	6	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158538125	G	G	158538125	1	3	101	0	1	0	0	0	0	0	0	0	9620	928	32	4		4	MFSD1	3	158538125	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	7436612	158538125	39484305	80	98977											
SLITRK3	22865	broad.mit.edu	37	chr3	164908075	164908075	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcatggggatgagattatCatttaaaatcagaaccctca	8	7	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164908075	A	A	164908075	3	1	101	1	0	0	0	0	1	0	0	0	14858	826	29	3	2393	3	SLITRK3	3	164908075	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	6369950	164908075	33114355	81	98978											
TP63	8626	broad.mit.edu	37	chr3	189582013	189582013	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctccactggccccaactCtaagcagtattccactgaac	5	15	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189582013	G	G	189582013	1	3	101	0	1	0	0	0	0	0	0	0	16516	928	32	4		4	TP63	3	189582013	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	24673938	189582013	8440417	82	98979											
CPN2	1370	broad.mit.edu	37	chr3	194063201	194063201	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgttgaggaagaccacCttggtcaagttggggttact	14	6	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194063201	T	T	194063201	2	4	101	1	0	0	0	0	0	0	0	1	3842	680	24	4		4	CPN2	3	194063201	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	4481188	194063201	3959229	83	98980											
TACC3	10460	broad.mit.edu	37	chr4	1725529	1725529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatggccagcaaacttgaGgctcctttcactcaggatga	10	11	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1725529	T	T	1725529	3	4	101	1	0	0	0	0	1	0	0	0	15622	991	35	2	243	2	TACC3	4	1725529	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08		1725529	189428747	84	98981			1	77		4	4	5108	G		2.248336e-05
TACC3	10460	broad.mit.edu	37	chr4	1730435	1730435	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagcccccagaaagccctGagaccaggctgggccagcca	11	18	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1730435	T	T	1730435	4	4	101	1	0	0	0	0	0	1	0	0	15622	1291	45	3	1316	3	TACC3	4	1730435	Nonsense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	4906	1730435	189423841	85	98982			1	77		4	4	5108	G		2.248336e-05
TACC3	10460	broad.mit.edu	37	chr4	1730604	1730604	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaggccagaagtgtcatcaGatactcctttgaggccgggt	13	10	2	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1730604	T	T	1730604	1	4	101	0	1	0	0	0	0	0	0	0	15622	957	33	3		3	TACC3	4	1730604	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	169	1730604	189423672	86	98983			1	77		4	4	5108	G		2.248336e-05
TACC3	10460	broad.mit.edu	37	chr4	1730636	1730636	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggccgggtaggttctgcctGaggaggggcctctggataaa	17	8	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1730636	C	C	1730636	1	2	101	0	1	0	0	0	0	0	0	0	15622	1305	45	4		4	TACC3	4	1730636	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	32	1730636	189423640	87	98984			1	77		4	4	5108	G		2.248336e-05
SLIT2	9353	broad.mit.edu	37	chr4	20255609	20255609	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaatatcccccgcaacacCgagagactgtgagtatgcgc	11	12	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20255609	A	A	20255609	2	1	101	1	0	0	0	0	0	0	0	1	14854	639	23	1		1	SLIT2	4	20255609	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	18524973	20255609	170898667	88	98985											
AFF1	4299	broad.mit.edu	37	chr4	87957940	87957940	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaatgttagaacatattctCtaatatggcagcaagtatct	7	6	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87957940	G	G	87957940	1	3	101	0	1	0	0	0	0	0	0	0	356	928	32	4		4	AFF1	4	87957940	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	67702331	87957940	103196336	89	98986											
MTTP	4547	broad.mit.edu	37	chr4	100512725	100512725	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggggaagctgtttgtagaCtgaaagacagtttgctattt	12	4	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100512725	G	G	100512725	1	3	101	0	1	0	0	0	0	0	0	0	10058	580	20	4		4	MTTP	4	100512725	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	12554785	100512725	90641551	90	98987											
COL25A1	84570	broad.mit.edu	37	chr4	109780972	109780972	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaaacagaaatacaactCacagctctctctgaatatca	5	11	4	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109780972	T	T	109780972	1	4	101	0	1	0	0	0	0	0	0	0	3716	841	29	4		4	COL25A1	4	109780972	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	9268247	109780972	81373304	91	98988											
CAMK2D	817	broad.mit.edu	37	chr4	114436064	114436064	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactgaaaattgcattttttCaccatcataaaattaatttt	2	6	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114436064	A	A	114436064	1	1	101	0	1	0	0	0	0	0	0	0	2627	841	29	3		3	CAMK2D	4	114436064	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	4655092	114436064	76718212	92	98989											
CCNA2	890	broad.mit.edu	37	chr4	122740048	122740048	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtatgggtcagcatctatCaaacttaattctcccaaaaa	6	9	4	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122740048	G	G	122740048	3	3	101	1	0	0	0	0	1	0	0	0	2940	825	29	4	287	4	CCNA2	4	122740048	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	8303984	122740048	68414228	93	98990											
FAT4	79633	broad.mit.edu	37	chr4	126239448	126239448	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttacaagaggcagagactGaccggaggtccttccgtctg	12	12	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126239448	A	A	126239448	3	1	101	1	0	0	0	0	1	0	0	0	5749	1290	45	4	1884	4	FAT4	4	126239448	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	3499400	126239448	64914828	94	98991											
PHF17	79960	broad.mit.edu	37	chr4	129792666	129792666	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggttcattcgctgaaaaAgccccataagcgagatcctt	8	11	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129792666	G	G	129792666	3	3	101	1	0	0	0	0	1	0	0	0	11923	72	3	5	1843	5	PHF17	4	129792666	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08	3553218	129792666	61361610	95	98992											
SMAD1	4086	broad.mit.edu	37	chr4	146467854	146467854	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataacattttctttcctctaGatgttcaggcggttgcttat	7	8	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146467854	C	C	146467854	5	2	101	1	0	0	0	0	0	0	1	0	14871	956	33	4	789	4	SMAD1	4	146467854	Splice_Site	SNP	G	TCGA-38-4630-01A-01D-1265-08	16675188	146467854	44686422	96	98993											
ACSL1	2180	broad.mit.edu	37	chr4	185709703	185709703	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataggagcaaatgtgcatttCtgaaaggccactcgttcttc	9	9	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185709703	G	G	185709703	1	3	101	0	1	0	0	0	0	0	0	0	177	928	32	4		4	ACSL1	4	185709703	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	39241849	185709703	5444573	97	98994											
ZDHHC11	79844	broad.mit.edu	37	chr5	848868	848868	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccagaagaggcgtggccgCtggtcagccctgctcaccca	13	16	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	848868	G	G	848868	1	3	101	0	1	0	0	0	0	0	0	0	17727	812	28	4		4	ZDHHC11	5	848868	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08		848868	180066392	98	98995											
SEMA5A	9037	broad.mit.edu	37	chr5	9054013	9054013	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgagttctgaatctatagctCagtgagaactattttattat	7	6	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9054013	T	T	9054013	1	4	101	0	1	0	0	0	0	0	0	0	14150	841	29	4		4	SEMA5A	5	9054013	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	8205145	9054013	171861247	99	98996											
ROPN1L	83853	broad.mit.edu	37	chr5	10442326	10442327	+	Missense_Mutation	DNP	CC	TT	TT													cgctcagcagatccacattcCcccggagctgccggacatcc							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10442327	TT	TT	10442326	3	4	101	1	0	0	0	0	1	0	0	0	13636	623	22	4	49	4	ROPN1L	5	10442326	Missense_Mutation	DNP	CC	TCGA-38-4630-01A-01D-1265-08	1388313	10442326	170472934	100	98997											
FBXL7	23194	broad.mit.edu	37	chr5	15928576	15928576	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtctttgatgtggtgtcCctctgccctaatctggagca	11	12	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928576	A	A	15928576	2	1	101	1	0	0	0	0	0	0	0	1	5781	610	22	2		2	FBXL7	5	15928576	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	5486250	15928576	164986684	101	98998											
BASP1	10409	broad.mit.edu	37	chr5	17276076	17276076	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctctctctctctctctctCtctatctctctctctatctc	0	19	10	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17276076	A	A	17276076	1	1	101	0	1	0	0	0	0	0	0	0	1322	928	32	3		3	BASP1	5	17276076	3'UTR	SNP	C	TCGA-38-4630-01A-01D-1265-08	1347500	17276076	163639184	102	98999											
WDR70	55100	broad.mit.edu	37	chr5	37480018	37480018	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctctcaggccaaggtgattGacagagatggttttgaagta	13	6	1	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37480018	C	C	37480018	3	2	101	1	0	0	0	0	1	0	0	0	17448	1290	45	4	799	4	WDR70	5	37480018	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	20203942	37480018	143435242	103	99000											
GPR98	84059	broad.mit.edu	37	chr5	89953591	89953591	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatatccaattcattgtataCtagttatgcaaaagtttcat	4	6	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89953591	G	G	89953591	1	3	101	0	1	0	0	0	0	0	0	0	6787	580	20	4		4	GPR98	5	89953591	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	52473573	89953591	90961669	104	99001											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139820670	139820670	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttccagtggaggttacttaGatattgtgaaattattactt	8	5	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139820670	A	A	139820670	3	1	101	1	0	0	0	0	1	0	0	0	629	942	33	4	874	4	ANKHD1-EIF4EBP3	5	139820670	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	49867079	139820670	41094590	105	99002											
PCDHA1	56147	broad.mit.edu	37	chr5	140167773	140167773	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacacgggcgagatcagcaCgactcgtgtcctggacgagg	15	11	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140167773	T	T	140167773	3	4	101	1	0	0	0	0	1	0	0	0	11613	536	19	4	1900	4	PCDHA1	5	140167773	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	347103	140167773	40747487	106	99003											
ADRB2	154	broad.mit.edu	37	chr5	148207101	148207101	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctccagaagattgacaaatCtgagggccgcttccatgtcc	10	12	1	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148207101	A	A	148207101	3	1	101	1	0	0	0	0	1	0	0	0	341	913	32	3	709	3	ADRB2	5	148207101	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	8039328	148207101	32708159	107	99004											
SLC34A1	6569	broad.mit.edu	37	chr5	176821246	176821246	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacaggatgggcctttccaGatcctgctaagtcctgtgac	10	13	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176821246	C	C	176821246	1	2	101	0	1	0	0	0	0	0	0	0	14681	957	33	4		4	SLC34A1	5	176821246	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	28614145	176821246	4094014	108	99005											
DBN1	1627	broad.mit.edu	37	chr5	176887701	176887701	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctcctcatcccgatggtCaccctagaaaccaaagggac	7	15	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176887701	T	T	176887701	3	4	101	1	0	0	0	0	1	0	0	0	4285	826	29	4	1198	4	DBN1	5	176887701	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	66455	176887701	4027559	109	99006											
SLC22A23	63027	broad.mit.edu	37	chr6	3287315	3287315	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcagtggtggatcccgtAccccgtcagcctgtggagac	13	12	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3287315	C	C	3287315	3	2	101	1	0	0	0	0	1	0	0	0	14566	391	14	5	752	5	SLC22A23	6	3287315	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08		3287315	167827752	110	99007											
E2F3	1871	broad.mit.edu	37	chr6	20402459	20402459	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acactaaaaagagcaggagcGagagatgagaaagggaatcc	13	6	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20402459	T	T	20402459	1	4	101	0	1	0	0	0	0	0	0	0	4908	1073	37	3		3	E2F3	6	20402459	5'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08	17115144	20402459	150712608	111	99008											
OR2J2	26707	broad.mit.edu	37	chr6	29141890	29141890	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttttactatctcagcacttCattcctcctttactttctgg	4	12	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29141890	G	G	29141890	3	3	101	1	0	0	0	0	1	0	0	0	11097	826	29	4	480	4	OR2J2	6	29141890	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	8739431	29141890	141973177	112	99009											
OR2J2	26707	broad.mit.edu	37	chr6	29142165	29142165	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcttatggttgtatctctCtttttcattccagtcatgtg	6	9	5	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29142165	G	G	29142165	2	3	101	1	0	0	0	0	0	0	0	1	11097	900	32	4		4	OR2J2	6	29142165	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	275	29142165	141972902	113	99010											
NRM	11270	broad.mit.edu	37	chr6	30657883	30657883	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaggaccccaaagtaccGggatgtccatgccttcactc	9	14	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30657883	A	A	30657883	3	1	101	1	0	0	0	0	1	0	0	0	10752	1115	39	4	529	4	NRM	6	30657883	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	1515718	30657883	140457184	114	99011											
VPS52	6293	broad.mit.edu	37	chr6	33239329	33239329	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgaagctaggagcaccgGaactacggaggagaaacagc	13	9	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33239329	A	A	33239329	1	1	101	0	1	0	0	0	0	0	0	0	17341	1189	41	4		4	VPS52	6	33239329	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	2581446	33239329	137875738	115	99012											
COL19A1	1310	broad.mit.edu	37	chr6	70881788	70881788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaagcaaaaaaatctttgCtttggaaaccaatgcttaaa	6	6	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70881788	A	A	70881788	1	1	101	0	1	0	0	0	0	0	0	0	3708	812	28	3		3	COL19A1	6	70881788	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	37642459	70881788	100233279	116	99013											
CD109	135228	broad.mit.edu	37	chr6	74468721	74468721	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attatattgttctatgaattCtaagcatttaaatggtacca	5	5	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74468721	G	G	74468721	3	3	101	1	0	0	0	0	1	0	0	0	2993	913	32	4	754	4	CD109	6	74468721	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	3586933	74468721	96646346	117	99014											
UBE2J1	51465	broad.mit.edu	37	chr6	90052103	90052103	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcagtactatccgcccGtgataaactcctccatcaaa	8	13	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90052103	A	A	90052103	2	1	101	1	0	0	0	0	0	0	0	1	16986	1136	40	4		4	UBE2J1	6	90052103	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	15583382	90052103	81062964	118	99015											
PDSS2	57107	broad.mit.edu	37	chr6	107551139	107551139	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttatatttgtatttggattCagagctcacattggtggcgg	12	5	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107551139	T	T	107551139	1	4	101	0	1	0	0	0	0	0	0	0	11788	841	29	4		4	PDSS2	6	107551139	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	17499036	107551139	63563928	119	99016											
ENPP3	5169	broad.mit.edu	37	chr6	132054832	132054832	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttctatttagcagacaaGaatatcacccacggcttcct	5	13	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132054832	T	T	132054832	3	4	101	1	0	0	0	0	1	0	0	0	5173	933	33	3	2140	3	ENPP3	6	132054832	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	24503693	132054832	39060235	120	99017											
KIAA1244	57221	broad.mit.edu	37	chr6	138656212	138656212	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatggaccaagggcaaatgCggcattccttcagcgcaggc	13	11	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138656212	T	T	138656212	3	4	101	1	0	0	0	0	1	0	0	0	8287	759	27	4	6359	4	KIAA1244	6	138656212	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	6601380	138656212	32458855	121	99018											
UTRN	7402	broad.mit.edu	37	chr6	144769930	144769930	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagagatagagaaattgttCaaatccaatattgcacatac	7	6	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144769930	A	A	144769930	1	1	101	0	1	0	0	0	0	0	0	0	17230	841	29	3		3	UTRN	6	144769930	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	6113718	144769930	26345137	122	99019											
SYNE1	23345	broad.mit.edu	37	chr6	152539586	152539586	+	Intron	DEL	T	-	-													ttcagttaaaaaaaaaaaaaTtggtattttaataaagtctg							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152539586	-	-	152539586	6	5	101	0	1	1	0	1	0	0	0	0	15564	1508	52	0		0	SYNE1	6	152539586	Intron	DEL	T	TCGA-38-4630-01A-01D-1265-08	7769656	152539586	18575481	123	99020											
SNX9	51429	broad.mit.edu	37	chr6	158331087	158331087	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaatgctaaacccaggatGacaaatagaaagactccagt	8	8	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158331087	A	A	158331087	1	1	101	0	1	0	0	0	0	0	0	0	15023	1305	45	4		4	SNX9	6	158331087	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	5791501	158331087	12783980	124	99021											
SMOC2	64094	broad.mit.edu	37	chr6	169051407	169051407	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctgaccagcgttctggaCgcgctgtccacggacatggt	12	12	2	1	rs140169041		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169051407	T	T	169051407	2	4	101	1	0	0	0	0	0	0	0	1	14916	535	19	4		4	SMOC2	6	169051407	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	10720320	169051407	2063660	125	99022											
RADIL	55698	broad.mit.edu	37	chr7	4905222	4905222	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagggacctcggatgtcacAgtgatcttgctcttgctcct	10	11	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4905222	G	G	4905222	1	3	101	0	1	0	0	0	0	0	0	0	13105	203	7	5		5	RADIL	7	4905222	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08		4905222	154233441	126	99023											
ETV1	2115	broad.mit.edu	37	chr7	13949472	13949472	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggacacattatttaacCtctgtgcctcagtttcctca	5	14	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13949472	T	T	13949472	1	4	101	0	1	0	0	0	0	0	0	0	5319	696	24	4		4	ETV1	7	13949472	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	9044250	13949472	145189191	127	99024											
RAPGEF5	9771	broad.mit.edu	37	chr7	22175614	22175614	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttacagtaataaatttctGaaatatgaaattacatggca	6	4	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22175614	A	A	22175614	1	1	101	0	1	0	0	0	0	0	0	0	13155	1305	45	4		4	RAPGEF5	7	22175614	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	8226142	22175614	136963049	128	99025											
NPSR1	387129	broad.mit.edu	37	chr7	34791596	34791596	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagaagtctttctactgtCagagatgttggcgatggcat	12	7	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34791596	T	T	34791596	1	4	101	0	1	0	0	0	0	0	0	0	10695	841	29	4		4	NPSR1	7	34791596	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	12615982	34791596	124347067	129	99026											
DPY19L1	23333	broad.mit.edu	37	chr7	35009108	35009108	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaatacattggaaatgcaGagtgcaatcaagcttcctct	7	8	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35009108	A	A	35009108	2	1	101	1	0	0	0	0	0	0	0	1	4780	929	33	4		4	DPY19L1	7	35009108	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	217512	35009108	124129555	130	99027											
HUS1	3364	broad.mit.edu	37	chr7	48018982	48018982	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccggcgcccatccccgtTctgatcctcctgcgcggtcc	9	20	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48018982	C	C	48018982	1	2	101	0	1	0	0	0	0	0	0	0	7529	1798	62	5		5	HUS1	7	48018982	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	13009874	48018982	111119681	131	99028											
ZNF679	168417	broad.mit.edu	37	chr7	63726886	63726886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacaagagaattcatactgGagagaaaccatacacatgtg	8	9	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63726886	T	T	63726886	3	4	101	1	0	0	0	0	1	0	0	0	18213	1174	41	3	889	3	ZNF679	7	63726886	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	15707904	63726886	95411777	132	99029											
AUTS2	26053	broad.mit.edu	37	chr7	70255994	70255994	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcccgataagccgagaacagGagcaagaacgaggaagaaga	14	8	0	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70255994	A	A	70255994	1	1	101	0	1	0	0	0	0	0	0	0	1230	1189	41	4		4	AUTS2	7	70255994	3'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08	6529108	70255994	88882669	133	99030											
ABCB1	5243	broad.mit.edu	37	chr7	87150767	87150767	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccttaaagtctctctttcCcctgccgtcatgtctaagtc	5	14	4	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87150767	T	T	87150767	1	4	101	0	1	0	0	0	0	0	0	0	40	638	22	4		4	ABCB1	7	87150767	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	16894773	87150767	71987896	134	99031											
STEAP4	79689	broad.mit.edu	37	chr7	87910055	87910055	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatttttcaccctatagtcTtagctgtagatatggaggca	9	7	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87910055	A	A	87910055	1	1	101	0	1	0	0	0	0	0	0	0	15398	1624	56	5		5	STEAP4	7	87910055	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	759288	87910055	71228608	135	99032											
ZNF804B	219578	broad.mit.edu	37	chr7	88964043	88964043	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcctaaagtgcctcttTacctcaacacatctctaaag	3	12	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88964043	G	G	88964043	3	3	101	1	0	0	0	0	1	0	0	0	18300	1754	61	5	1761	5	ZNF804B	7	88964043	Missense_Mutation	SNP	T	TCGA-38-4630-01A-01D-1265-08	1053988	88964043	70174620	136	99033											
AKAP9	10142	broad.mit.edu	37	chr7	91651733	91651733	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtaatttgcttttttaCtttaaaatgtgagctaacgt	7	4	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91651733	T	T	91651733	1	4	101	0	1	0	0	0	0	0	0	0	459	580	20	4		4	AKAP9	7	91651733	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	2687690	91651733	67486930	137	99034											
MUC17	140453	broad.mit.edu	37	chr7	100685800	100685800	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccattaacaactatgcctgtCagcaccacacgtgtgaccag	7	14	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100685800	G	G	100685800	2	3	101	1	0	0	0	0	0	0	0	1	10068	813	29	4		4	MUC17	7	100685800	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	9034067	100685800	58452863	138	99035											
DOCK4	9732	broad.mit.edu	37	chr7	111462376	111462376	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgtactcccttcttcctCtatacattgagctgcaatta	4	11	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111462376	T	T	111462376	1	4	101	0	1	0	0	0	0	0	0	0	4729	928	32	4		4	DOCK4	7	111462376	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	10776576	111462376	47676287	139	99036											
MKLN1	4289	broad.mit.edu	37	chr7	131147949	131147949	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatctaatgtgaatattttCatcttatttttttctttaat	2	5	4	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131147949	T	T	131147949	1	4	101	0	1	0	0	0	0	0	0	0	9696	841	29	4		4	MKLN1	7	131147949	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	19685573	131147949	27990714	140	99037											
C7orf33	202865	broad.mit.edu	37	chr7	148288208	148288208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttaacttgtcatatgccaCgggaagacataaggtaagtt	9	6	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148288208	T	T	148288208	3	4	101	1	0	0	0	0	1	0	0	0	2413	536	19	4	193	4	C7orf33	7	148288208	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	17140259	148288208	10850455	141	99038											
RARRES2	5919	broad.mit.edu	37	chr7	150036957	150036957	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaggggtaaccaaaccatCttcctgtctgccaggcccca	8	16	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150036957	G	G	150036957	1	3	101	0	1	0	0	0	0	0	0	0	13164	928	32	4		4	RARRES2	7	150036957	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	1748749	150036957	9101706	142	99039											
SGCZ	137868	broad.mit.edu	37	chr8	14166723	14166723	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcggctgatctctaaGtttgatactgttgaagactt	10	8	1	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14166723	C	C	14166723	1	2	101	0	1	0	0	0	0	0	0	0	14317	1044	36	4		4	SGCZ	8	14166723	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08		14166723	132197299	143	99040											
LPL	4023	broad.mit.edu	37	chr8	19809451	19809451	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtggcccggtttatcaacTggatggaggtaagactggga	15	6	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19809451	C	C	19809451	3	2	101	1	0	0	0	0	1	0	0	0	9008	1580	55	5	431	5	LPL	8	19809451	Missense_Mutation	SNP	T	TCGA-38-4630-01A-01D-1265-08	5642728	19809451	126554571	144	99041											
UNC5D	137970	broad.mit.edu	37	chr8	35605998	35605998	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattctcattcaaatatggcCcctcctctacatacttctct	2	14	4	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35605998	T	T	35605998	1	4	101	0	1	0	0	0	0	0	0	0	17121	638	22	4		4	UNC5D	8	35605998	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	15796547	35605998	110758024	145	99042											
DKK4	27121	broad.mit.edu	37	chr8	42233236	42233236	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagggcagcacatggcatctCgctggcacctcctccgcaac	10	17	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42233236	T	T	42233236	3	4	101	1	0	0	0	0	1	0	0	0	4587	884	31	4	462	4	DKK4	8	42233236	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	6627238	42233236	104130786	146	99043											
HOOK3	84376	broad.mit.edu	37	chr8	42841693	42841693	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttttcatttctgttctgGtattaaatttgtaagagtgc	7	4	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42841693	C	C	42841693	1	2	101	0	1	0	0	0	0	0	0	0	7351	1276	44	4		4	HOOK3	8	42841693	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	608457	42841693	103522329	147	99044											
SNTG1	54212	broad.mit.edu	37	chr8	51465789	51465789	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggtttctcaggctttataAaatccttcagtatatatgta	7	6	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51465789	T	T	51465789	1	4	101	0	1	0	0	0	0	0	0	0	14988	29	1	5		5	SNTG1	8	51465789	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	8624096	51465789	94898233	148	99045											
PREX2	80243	broad.mit.edu	37	chr8	69104734	69104734	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggctgggcgcctgccacatCatcatgtgcagcagcggtgt	14	12	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69104734	T	T	69104734	2	4	101	1	0	0	0	0	0	0	0	1	12583	816	29	4		4	PREX2	8	69104734	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	17638945	69104734	77259288	149	99046											
SULF1	23213	broad.mit.edu	37	chr8	70533431	70533431	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggagtctggttaccgtgcCagcagaagccaaagaaagag	14	8	1	3	rs147223148		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70533431	G	G	70533431	2	3	101	1	0	0	0	0	0	0	0	1	15488	581	21	4		4	SULF1	8	70533431	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	1428697	70533431	75830591	150	99047											
TPD52	7163	broad.mit.edu	37	chr8	81083599	81083610	+	Intron	DEL	AAGCCCGAGTCC	-	-													ctcagccccgcgccgagccaAagcccgagtccaagcccgag					rs113293335		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81083610	-	-	81083599	6	5	101	0	1	1	0	1	0	0	0	0	16521	29	1	0		0	TPD52	8	81083599	Intron	DEL	AAGCCCGAGTCC	TCGA-38-4630-01A-01D-1265-08	10550168	81083599	65280423	151	99048											
RIMS2	9699	broad.mit.edu	37	chr8	105105725	105105725	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggatgggatcctcatagAggggcagataatgtttctac	12	7	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105105725	T	T	105105725	3	4	101	1	0	0	0	0	1	0	0	0	13479	319	11	5		5	RIMS2	8	105105725	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08	24022126	105105725	41258297	152	99049											
MTBP	27085	broad.mit.edu	37	chr8	121531009	121531009	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accgagactcatgaatgtttCactgcatgcagccagcgtct	9	12	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121531009	T	T	121531009	2	4	101	1	0	0	0	0	0	0	0	1	10006	825	29	4		4	MTBP	8	121531009	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	16425284	121531009	24833013	153	99050											
FAM135B	51059	broad.mit.edu	37	chr8	139209937	139209937	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgaaacagaaacagagGctgaggaatattgcacctgg	15	6	0	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139209937	A	A	139209937	1	1	101	0	1	0	0	0	0	0	0	0	5495	1218	42	4		4	FAM135B	8	139209937	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	17678928	139209937	7154085	154	99051											
EIF2C2	27161	broad.mit.edu	37	chr8	141570353	141570353	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaggtgtcacgcagcggCgctggctctgacagaggcca	15	13	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141570353	T	T	141570353	1	4	101	0	1	0	0	0	0	0	0	0	5046	783	27	4		4	EIF2C2	8	141570353	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	2360416	141570353	4793669	155	99052											
LYNX1	66004	broad.mit.edu	37	chr8	143845996	143845996	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggctgtgggggctgagcGtccgggggcctggaggaggg	26	7	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143845996	C	C	143845996	1	2	101	0	1	0	0	0	0	0	0	0	9196	1160	40	4		4	LYNX1	8	143845996	3'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08	2275643	143845996	2518026	156	99053											
GSDMD	79792	broad.mit.edu	37	chr8	144644330	144644330	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggagggtgcccggggcacaCaaggcctgcccagccagcca	16	15	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144644330	G	G	144644330	1	3	101	0	1	0	0	0	0	0	0	0	6885	493	17	4		4	GSDMD	8	144644330	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	798334	144644330	1719692	157	99054											
PLEC	5339	broad.mit.edu	37	chr8	145010069	145010069	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgtctctccagctggaggtGaagttgtcgcatcgcaggcc	13	13	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145010069	A	A	145010069	2	1	101	1	0	0	0	0	0	0	0	1	12147	1281	45	4		4	PLEC	8	145010069	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	365739	145010069	1353953	158	99055											
CNTLN	54875	broad.mit.edu	37	chr9	17342499	17342499	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacttgggagaaattttttCatggcttaaaagctattaaa	7	4	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17342499	G	G	17342499	1	3	101	0	1	0	0	0	0	0	0	0	3671	841	29	4		4	CNTLN	9	17342499	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08		17342499	123870932	159	99056											
KLHL9	55958	broad.mit.edu	37	chr9	21333798	21333798	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtatcataattactctgaCcaccaactacataaagaaag	4	9	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21333798	G	G	21333798	3	3	101	1	0	0	0	0	1	0	0	0	8467	507	18	4	796	4	KLHL9	9	21333798	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	3991299	21333798	119879633	160	99057											
FAM120A	23196	broad.mit.edu	37	chr9	96323398	96323403	+	In_Frame_Del	DEL	ACCTAT	-	-													attttttatgcaggagtccaAcctataccttctcagggagg							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96323403	-	-	96323398	7	5	101	1	0	1	0	1	0	0	0	0	5461	40	2	0	2876	0	FAM120A	9	96323398	In_Frame_Del	DEL	ACCTAT	TCGA-38-4630-01A-01D-1265-08	74989600	96323398	44890033	161	99058											
CRB2	286204	broad.mit.edu	37	chr9	126125205	126125205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcgctccagggaccgaGtgccaggctaccgagagtgg	16	13	0	1	rs149331725		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126125205	T	T	126125205	3	4	101	1	0	0	0	0	1	0	0	0	3881	1020	36	3	162	3	CRB2	9	126125205	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	29801807	126125205	15088226	162	99059											
LRRC8A	56262	broad.mit.edu	37	chr9	131678377	131678377	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcttttttccctccagatCgagacgctccctccggagct	8	16	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131678377	T	T	131678377	2	4	101	1	0	0	0	0	0	0	0	1	9108	874	31	4		4	LRRC8A	9	131678377	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	5553172	131678377	9535054	163	99060											
SH3GLB2	56904	broad.mit.edu	37	chr9	131784697	131784697	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggccaaatttctcctcCgtgaactacgcagaggggaa	11	12	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131784697	A	A	131784697	2	1	101	1	0	0	0	0	0	0	0	1	14367	639	23	1		1	SH3GLB2	9	131784697	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	106320	131784697	9428734	164	99061											
TUBB2C	10383	broad.mit.edu	37	chr9	140137954	140137954	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccagcagtaccaggatgcCacagccgaggaggagggcga	15	11	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140137954	A	A	140137954	2	1	101	1	0	0	0	0	0	0	0	1	16882	581	21	2		2	TUBB2C	9	140137954	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	8353257	140137954	1075477	165	99062											
PITRM1	10531	broad.mit.edu	37	chr10	3206126	3206126	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatacatgtaaaataatacAcacgttacattacttacaat	3	7	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3206126	G	G	3206126	1	3	101	0	1	0	0	0	0	0	0	0	12048	174	6	5		5	PITRM1	10	3206126	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08		3206126	132328621	166	99063											
NEBL	10529	broad.mit.edu	37	chr10	21124654	21124654	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttagacatattttacaaaAgaggtaacaaagctccttga	7	6	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21124654	G	G	21124654	1	3	101	0	1	0	0	0	0	0	0	0	10398	87	3	5		5	NEBL	10	21124654	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	17918528	21124654	114410093	167	99064											
FRMPD2	143162	broad.mit.edu	37	chr10	49440183	49440183	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatacgccaagccaaagtaGgtgagttcctcgaggttggc	12	9	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49440183	C	C	49440183	2	2	101	1	0	0	0	0	0	0	0	1	6118	987	35	4		4	FRMPD2	10	49440183	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	28315529	49440183	86094564	168	99065											
ASAH2	56624	broad.mit.edu	37	chr10	52004763	52004763	+	Intron	DEL	A	-	-													ctctgccacttctgctcatgAaaaaaaaaggccaatggatt					rs144809559		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52004763	-	-	52004763	6	5	101	0	1	1	0	1	0	0	0	0	1011	261	9	0		0	ASAH2	10	52004763	Intron	DEL	A	TCGA-38-4630-01A-01D-1265-08	2564580	52004763	83529984	169	99066											
STOX1	219736	broad.mit.edu	37	chr10	70644771	70644771	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgacaatcgggcataagtatCcttcaaaagagggggttaag	12	6	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70644771	G	G	70644771	3	3	101	1	0	0	0	0	1	0	0	0	15437	855	30	4	1229	4	STOX1	10	70644771	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	18640008	70644771	64889976	170	99067											
STOX1	219736	broad.mit.edu	37	chr10	70645178	70645178	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttggattcctcaagaatCtttgatggtaaagccaaaga	8	8	2	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70645178	G	G	70645178	3	3	101	1	0	0	0	0	1	0	0	0	15437	903	32	4	1636	4	STOX1	10	70645178	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	407	70645178	64889569	171	99068											
P4HA1	5033	broad.mit.edu	37	chr10	74804763	74804763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctaattctgtaatgtaccGtctccaagtctcctgttatt	6	10	3	0	rs145054165	by1000genomes	TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74804763	A	A	74804763	3	1	101	1	0	0	0	0	1	0	0	0	11450	1145	40	4	583	4	P4HA1	10	74804763	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	4159585	74804763	60729984	172	99069											
DUSP13	51207	broad.mit.edu	37	chr10	76855301	76855301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcctaaagcacaccctcCaccctccaccatgcctgatc	5	19	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76855301	A	A	76855301	1	1	101	0	1	0	0	0	0	0	0	0	4853	609	21	2		2	DUSP13	10	76855301	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	2050538	76855301	58679446	173	99070											
PAX2	5076	broad.mit.edu	37	chr10	102584789	102584789	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acccacccaagtctgtgcccGaggagcactcagcctcagct	9	17	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102584789	C	C	102584789	1	2	101	0	1	0	0	0	0	0	0	0	11573	1073	37	4		4	PAX2	10	102584789	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	25729488	102584789	32949958	174	99071											
LDB1	8861	broad.mit.edu	37	chr10	103868124	103868124	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acataatcggggcaagggctCgcccggcccagggcggcaga	16	13	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103868124	T	T	103868124	1	4	101	0	1	0	0	0	0	0	0	0	8767	899	31	4		4	LDB1	10	103868124	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	1283335	103868124	31666623	175	99072											
NT5C2	22978	broad.mit.edu	37	chr10	104850489	104850489	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtctgccgggagccaCtgcgaaacaggcttcccatc	12	13	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104850489	T	T	104850489	3	4	101	1	0	0	0	0	1	0	0	0	10782	565	20	4	365	4	NT5C2	10	104850489	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	982365	104850489	30684258	176	99073											
ABLIM1	3983	broad.mit.edu	37	chr10	116211626	116211626	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactatagacaagtgttatGgaagcctttgtaatacatct	7	6	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116211626	A	A	116211626	1	1	101	0	1	0	0	0	0	0	0	0	94	1363	47	4		4	ABLIM1	10	116211626	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	11361137	116211626	19323121	177	99074											
C10orf90	118611	broad.mit.edu	37	chr10	128114599	128114599	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggagtctgttactttgtaaGatcacccttttcctttgttc	7	10	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128114599	A	A	128114599	2	1	101	1	0	0	0	0	0	0	0	1	1634	932	33	4		4	C10orf90	10	128114599	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	11902973	128114599	7420148	178	99075											
PHRF1	57661	broad.mit.edu	37	chr11	605795	605795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgggagttctagggtggGgccgtgatagcctggctctc	18	8	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	605795	A	A	605795	1	1	101	0	1	0	0	0	0	0	0	0	11956	1247	43	4		4	PHRF1	11	605795	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08		605795	134400721	179	99076											
TRIM22	10346	broad.mit.edu	37	chr11	5729554	5729554	+	Intron	DEL	C	-	-													tggatttcttagtatcagggCtcaatagggaagcgggaggt							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5729554	-	-	5729554	6	5	101	0	1	1	0	1	0	0	0	0	16620	812	28	0		0	TRIM22	11	5729554	Intron	DEL	C	TCGA-38-4630-01A-01D-1265-08	5123759	5729554	129276962	180	99077											
TPP1	1200	broad.mit.edu	37	chr11	6638045	6638045	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagttgccaccgaagaggcGcatgaactgagccaggtctg	13	10	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6638045	A	A	6638045	3	1	101	1	0	0	0	0	1	0	0	0	16535	1087	38	4	986	4	TPP1	11	6638045	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	908491	6638045	128368471	181	99078											
MRGPRX4	117196	broad.mit.edu	37	chr11	18195626	18195626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccatcatttacttcttcGtgggctcctttaggcagcgt	8	13	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18195626	A	A	18195626	3	1	101	1	0	0	0	0	1	0	0	0	9863	1145	40	4	825	4	MRGPRX4	11	18195626	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	11557581	18195626	116810890	182	99079											
LUZP2	338645	broad.mit.edu	37	chr11	24518651	24518651	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccttccccaggcgtccgttCgtgtgcccgtctccgccttt	10	18	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24518651	T	T	24518651	1	4	101	0	1	0	0	0	0	0	0	0	9174	899	31	4		4	LUZP2	11	24518651	5'UTR	SNP	C	TCGA-38-4630-01A-01D-1265-08	6323025	24518651	110487865	183	99080											
CAPRIN1	4076	broad.mit.edu	37	chr11	34113552	34113552	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaccagagcttttctagtCagcctcaccaagtagaacaa	6	11	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34113552	T	T	34113552	4	4	101	1	0	0	0	0	0	1	0	0	2661	827	29	4	1708	4	CAPRIN1	11	34113552	Nonsense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	9594901	34113552	100892964	184	99081											
SPRYD5	84767	broad.mit.edu	37	chr11	55655667	55655667	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccagaatggaacattccAgggagcttttaagaggaatg	12	6	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55655667	C	C	55655667	2	2	101	1	0	0	0	0	0	0	0	1	15229	179	7	5		5	SPRYD5	11	55655667	Silent	SNP	A	TCGA-38-4630-01A-01D-1265-08	21542115	55655667	79350849	185	99082											
LPXN	9404	broad.mit.edu	37	chr11	58317464	58317464	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatccaggatgggagcagcGcagtaagcacagcgtggaga	15	9	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58317464	A	A	58317464	2	1	101	1	0	0	0	0	0	0	0	1	9016	1079	38	4		4	LPXN	11	58317464	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	2661797	58317464	76689052	186	99083											
STIP1	10963	broad.mit.edu	37	chr11	63967504	63967504	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaggcaacgagtgttttcaGaaaggtactgcctgcagctg	12	8	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63967504	A	A	63967504	2	1	101	1	0	0	0	0	0	0	0	1	15403	933	33	4		4	STIP1	11	63967504	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	5650040	63967504	71039012	187	99084											
STIP1	10963	broad.mit.edu	37	chr11	63971036	63971036	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtgcagcagatcatgagtGacccagccatgcgccttatc	11	12	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63971036	A	A	63971036	3	1	101	1	0	0	0	0	1	0	0	0	15403	1290	45	4	1551	4	STIP1	11	63971036	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	3532	63971036	71035480	188	99085											
FKBP2	2286	broad.mit.edu	37	chr11	64010672	64010678	+	Frame_Shift_Del	DEL	GGAAGCT	-	-													ccttctcatggttccacaggGgaagctggaagatgggacag							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64010678	-	-	64010672	7	5	101	1	0	1	0	1	0	0	0	0	5965	1246	43	0	179	0	FKBP2	11	64010672	Frame_Shift_Del	DEL	GGAAGCT	TCGA-38-4630-01A-01D-1265-08	39636	64010672	70995844	189	99086			2	78		3	3	534	N	GGAAGCT_G_C	1.462698e-05
FKBP2	2286	broad.mit.edu	37	chr11	64010859	64010859	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaagctgtgggaggcaaGccccagggatacaagacaag	15	8	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64010859	A	A	64010859	1	1	101	0	1	0	0	0	0	0	0	0	5965	986	34	4		4	FKBP2	11	64010859	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	187	64010859	70995657	190	99087			2	78		3	3	534	N	GGAAGCT_G_C	1.462698e-05
FKBP2	2286	broad.mit.edu	37	chr11	64011205	64011205	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttcccatctccattaccCttctccatttctggccttct	2	19	4	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64011205	T	T	64011205	1	4	101	0	1	0	0	0	0	0	0	0	5965	696	24	4		4	FKBP2	11	64011205	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	346	64011205	70995311	191	99088			2	78		3	3	534	N	GGAAGCT_G_C	1.462698e-05
PRDX5	25824	broad.mit.edu	37	chr11	64089013	64089013	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgtctccatgcccagcctCcaagcccaggctgatgcagc	9	18	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64089013	A	A	64089013	1	1	101	0	1	0	0	0	0	0	0	0	12574	870	30	3		3	PRDX5	11	64089013	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	77808	64089013	70917503	192	99089											
SLC25A45	283130	broad.mit.edu	37	chr11	65149419	65149419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccacaaattcctccaccgGcattgtctgggcttgcggga	11	13	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65149419	A	A	65149419	3	1	101	1	0	0	0	0	1	0	0	0	14624	1203	42	4	886	4	SLC25A45	11	65149419	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	1060406	65149419	69857097	193	99090											
MAP3K11	4296	broad.mit.edu	37	chr11	65373667	65373667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggccctgtaccattcCcagggtgagctttgggcaag	15	11	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65373667	A	A	65373667	1	1	101	0	1	0	0	0	0	0	0	0	9337	638	22	2		2	MAP3K11	11	65373667	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	224248	65373667	69632849	194	99091											
MRPL11	65003	broad.mit.edu	37	chr11	66205805	66205805	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaggaggcgccgtccgttCcctccttcgtcttcacttct	8	18	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66205805	A	A	66205805	1	1	101	0	1	0	0	0	0	0	0	0	9870	870	30	3		3	MRPL11	11	66205805	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	832138	66205805	68800711	195	99092											
PRKRIR	5612	broad.mit.edu	37	chr11	76062227	76062228	+	Frame_Shift_Ins	INS	-	T	T													gatggtggacggaagctctaINStatctttccccctgtgtttc							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76062228	T	T	76062227	7	5	101	1	0	1	1	0	0	0	0	0	12632	449	16	0	322	0	PRKRIR	11	76062227	Frame_Shift_Ins	INS	-	TCGA-38-4630-01A-01D-1265-08	9856422	76062227	58944289	196	99093											
USP28	57646	broad.mit.edu	37	chr11	113700169	113700169	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaaattcagcaacttcctGatagctggttagaaatgcac	7	8	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113700169	C	C	113700169	1	2	101	0	1	0	0	0	0	0	0	0	17185	1305	45	4		4	USP28	11	113700169	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	37637942	113700169	21306347	197	99094											
NNMT	4837	broad.mit.edu	37	chr11	114167355	114167355	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacctagaaaaatattacaAgtttggttctaggcactctg	7	7	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114167355	G	G	114167355	3	3	101	1	0	0	0	0	1	0	0	0	10604	72	3	5	79	5	NNMT	11	114167355	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08	467186	114167355	20839161	198	99095											
PHLDB1	23187	broad.mit.edu	37	chr11	118512945	118512945	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcctcccctcctgtccccTtttcccctccccattcccac	1	25	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118512945	C	C	118512945	1	2	101	0	1	0	0	0	0	0	0	0	11946	1624	56	5		5	PHLDB1	11	118512945	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	4345590	118512945	16493571	199	99096											
ADAMTS15	170689	broad.mit.edu	37	chr11	130319634	130319634	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggcgcgactctaccgccatCccagcatcctcaaccccatc	6	21	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130319634	T	T	130319634	3	4	101	1	0	0	0	0	1	0	0	0	260	855	30	4	768	4	ADAMTS15	11	130319634	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	11806689	130319634	4686882	200	99097											
OPCML	4978	broad.mit.edu	37	chr11	132306577	132306577	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcttccttgaaccactggAattcagccatggggactgca	9	11	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132306577	G	G	132306577	3	3	101	1	0	0	0	0	1	0	0	0	10968	246	9	5	288	5	OPCML	11	132306577	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08	1986943	132306577	2699939	201	99098											
OPCML	4978	broad.mit.edu	37	chr11	132306923	132306923	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caattctctccatttgctgaAaactctggcagtcacaggaa	7	11	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132306923	C	C	132306923	1	2	101	0	1	0	0	0	0	0	0	0	10968	29	1	5		5	OPCML	11	132306923	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	346	132306923	2699593	202	99099											
ATN1	1822	broad.mit.edu	37	chr12	7044920	7044920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctaccacccacctccaCtctttcctccttcccctcaa	1	24	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7044920	A	A	7044920	3	1	101	1	0	0	0	0	1	0	0	0	1115	565	20	3	504	3	ATN1	12	7044920	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08		7044920	126806975	203	99100											
CD163	9332	broad.mit.edu	37	chr12	7649601	7649601	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcccagttgcttgcatgCcacagcagcatcgtaactgt	8	13	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7649601	T	T	7649601	3	4	101	1	0	0	0	0	1	0	0	0	2997	739	26	4	2611	4	CD163	12	7649601	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	604681	7649601	126202294	204	99101											
ITPR2	3709	broad.mit.edu	37	chr12	26775203	26775203	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctgtaaaacctctgccctCtggctgaagtgcttaaacaa	8	12	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26775203	T	T	26775203	2	4	101	1	0	0	0	0	0	0	0	1	7991	912	32	4		4	ITPR2	12	26775203	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	19125602	26775203	107076692	205	99102											
C12orf11	55726	broad.mit.edu	37	chr12	27070632	27070632	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttattgtttctttaaacgaGccttctcgactgccgccacc	7	13	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27070632	T	T	27070632	2	4	101	1	0	0	0	0	0	0	0	1	1688	958	34	3		3	C12orf11	12	27070632	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	295429	27070632	106781263	206	99103											
ARNTL2	56938	broad.mit.edu	37	chr12	27542017	27542017	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctttgagcttgagaaaaatCaatcaaaaatcaaaaaagaa	5	5	4	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27542017	T	T	27542017	1	4	101	0	1	0	0	0	0	0	0	0	972	841	29	4		4	ARNTL2	12	27542017	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	471385	27542017	106309878	207	99104											
IPO8	10526	broad.mit.edu	37	chr12	30818182	30818184	+	In_Frame_Del	DEL	AAT	-	-													gaagatatcccaggttagacAataataatggaaatacatga							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30818184	-	-	30818182	7	5	101	1	0	1	0	1	0	0	0	0	7868	131	5	0	1765	0	IPO8	12	30818182	In_Frame_Del	DEL	AAT	TCGA-38-4630-01A-01D-1265-08	3276165	30818182	103033713	208	99105											
C12orf35	55196	broad.mit.edu	37	chr12	32145138	32145138	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaaggcaagatgtcaCgtgtatataacttacaattc	7	6	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32145138	T	T	32145138	1	4	101	0	1	0	0	0	0	0	0	0	1695	551	19	4		4	C12orf35	12	32145138	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	1326956	32145138	101706757	209	99106											
SOAT2	8435	broad.mit.edu	37	chr12	53498110	53498110	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttgaaacaaagtctcgctCtgttgctcaggctggagtgc	11	9	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53498110	G	G	53498110	1	3	101	0	1	0	0	0	0	0	0	0	15025	928	32	4		4	SOAT2	12	53498110	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	21352972	53498110	80353785	210	99107											
GTSF1	121355	broad.mit.edu	37	chr12	54858851	54858851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcaaattatgaccctacCtttctgcacttgataagatg	8	9	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54858851	A	A	54858851	3	1	101	1	0	0	0	0	1	0	0	0	6951	695	24	2	410	2	GTSF1	12	54858851	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	1360741	54858851	78993044	211	99108											
NEUROD4	58158	broad.mit.edu	37	chr12	55420633	55420633	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggccaggaactatatttGggctttatctgaagtcctgg	11	8	1	1	rs138082041		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55420633	A	A	55420633	4	1	101	1	0	0	0	0	0	1	0	0	10445	1357	47	4	412	4	NEUROD4	12	55420633	Nonsense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	561782	55420633	78431262	212	99109											
OR9K2	441639	broad.mit.edu	37	chr12	55524128	55524128	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatgacatttactttatcTttttgcgcttctcgggctgt	8	9	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55524128	G	G	55524128	2	3	101	1	0	0	0	0	0	0	0	1	11348	1596	56	5		5	OR9K2	12	55524128	Silent	SNP	T	TCGA-38-4630-01A-01D-1265-08	103495	55524128	78327767	213	99110											
DNAJC14	85406	broad.mit.edu	37	chr12	56212687	56212687	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattcccaatagagttcagGggattggggctatctgagag	13	7	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56212687	A	A	56212687	1	1	101	0	1	0	0	0	0	0	0	0	4673	1247	43	4		4	DNAJC14	12	56212687	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	688559	56212687	77639208	214	99111											
DGKA	1606	broad.mit.edu	37	chr12	56330686	56330695	+	Intron	DEL	TGTTTCTTCT	-	-													tttttccctctgtatttctgTgtttcttcttggaatttctt							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56330695	-	-	56330686	6	5	101	0	1	1	0	1	0	0	0	0	4505	1711	59	0		0	DGKA	12	56330686	Intron	DEL	TGTTTCTTCT	TCGA-38-4630-01A-01D-1265-08	117999	56330686	77521209	215	99112											
ERBB3	2065	broad.mit.edu	37	chr12	56487513	56487513	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagggcttgctgggagtcctCagactcctctcctaacccac	10	15	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56487513	G	G	56487513	1	3	101	0	1	0	0	0	0	0	0	0	5250	841	29	4		4	ERBB3	12	56487513	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	156827	56487513	77364382	216	99113											
NACA	4666	broad.mit.edu	37	chr12	57111976	57111976	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtagctagacctccttttGgggagggaggagttgcagct	17	7	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57111976	A	A	57111976	1	1	101	0	1	0	0	0	0	0	0	0	10227	1348	47	4		4	NACA	12	57111976	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	624463	57111976	76739919	217	99114											
STAT6	6778	broad.mit.edu	37	chr12	57495989	57495989	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggagaatccagtggaaggTccctgcatggaggctgagca	16	8	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57495989	G	G	57495989	1	3	101	0	1	0	0	0	0	0	0	0	15388	1682	58	5		5	STAT6	12	57495989	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	384013	57495989	76355906	218	99115											
DUSP6	1848	broad.mit.edu	37	chr12	89743225	89743225	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttgacaatgtcataggcgtCgttcatcgacagattgagct	10	8	2	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89743225	G	G	89743225	3	3	101	1	0	0	0	0	1	0	0	0	4869	884	31	4	197	4	DUSP6	12	89743225	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	32247236	89743225	44108670	219	99116											
RASAL1	8437	broad.mit.edu	37	chr12	113559367	113559367	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctgcccatcctccagcatCtgcactgacaggcagatctc	7	18	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113559367	G	G	113559367	3	3	101	1	0	0	0	0	1	0	0	0	13171	912	32	4	2107	4	RASAL1	12	113559367	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	23816142	113559367	20292528	220	99117											
SDSL	113675	broad.mit.edu	37	chr12	113871876	113871876	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaaggagatcctgggcctCtgctccggcctccatagcag	11	15	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113871876	G	G	113871876	1	3	101	0	1	0	0	0	0	0	0	0	14089	928	32	4		4	SDSL	12	113871876	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	312509	113871876	19980019	221	99118											
LATS2	26524	broad.mit.edu	37	chr13	21562678	21562678	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccaggcggaccgggccgcGgctggtggctgttgaaggag	20	10	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21562678	A	A	21562678	3	1	101	1	0	0	0	0	1	0	0	0	8719	1116	39	4	2045	4	LATS2	13	21562678	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08		21562678	93607200	222	99119											
ATP8A2	51761	broad.mit.edu	37	chr13	26153118	26153118	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgatttccaggggcacatTcttccagtgcctgccccatc	8	15	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26153118	C	C	26153118	1	2	101	0	1	0	0	0	0	0	0	0	1197	1798	62	5		5	ATP8A2	13	26153118	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	4590440	26153118	89016760	223	99120											
TRPC4	7223	broad.mit.edu	37	chr13	38237472	38237472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttctttacaaccatttGtcataggtttttcaagtttg	5	7	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38237472	T	T	38237472	1	4	101	0	1	0	0	0	0	0	0	0	16705	1392	48	3		3	TRPC4	13	38237472	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	12084354	38237472	76932406	224	99121											
FNDC3A	22862	broad.mit.edu	37	chr13	49712888	49712888	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttatttttttaagaaaaaGatgaagaaactaaagcattt	5	2	0	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49712888	C	C	49712888	3	2	101	1	0	0	0	0	1	0	0	0	6027	942	33	4	799	4	FNDC3A	13	49712888	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	11475416	49712888	65456990	225	99122											
WDFY2	115825	broad.mit.edu	37	chr13	52234723	52234723	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcatgtacatattttcttCtgttgtaggacagttcgtgt	8	6	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52234723	T	T	52234723	1	4	101	0	1	0	0	0	0	0	0	0	17396	928	32	4		4	WDFY2	13	52234723	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	2521835	52234723	62935155	226	99123											
PCDH17	27253	broad.mit.edu	37	chr13	58299337	58299337	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccaacagggatctgggcaGagagtctgtggatgcagagg	16	9	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58299337	C	C	58299337	3	2	101	1	0	0	0	0	1	0	0	0	11606	942	33	4	3403	4	PCDH17	13	58299337	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	6064614	58299337	56870541	227	99124											
TBC1D4	9882	broad.mit.edu	37	chr13	75876619	75876619	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgattcactatataattcTggtaaacaggcagctgtatg	9	7	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75876619	A	A	75876619	1	1	101	0	1	0	0	0	0	0	0	0	15744	1595	55	5		5	TBC1D4	13	75876619	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	17577282	75876619	39293259	228	99125											
SLITRK1	114798	broad.mit.edu	37	chr13	84455675	84455675	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caattcatccccgatctcatCacaaagtaacagcgaccatc	4	15	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84455675	T	T	84455675	1	4	101	0	1	0	0	0	0	0	0	0	14856	841	29	4		4	SLITRK1	13	84455675	5'UTR	SNP	C	TCGA-38-4630-01A-01D-1265-08	8579056	84455675	30714203	229	99126											
GPC6	10082	broad.mit.edu	37	chr13	95050858	95050858	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaccaacaaactaaaaaaCgcctacaatggcaatgatgt	6	9	0	2	rs146868653	byFrequency	TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95050858	T	T	95050858	2	4	101	1	0	0	0	0	0	0	0	1	6667	535	19	4		4	GPC6	13	95050858	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	10595183	95050858	20119020	230	99127											
SOX21	11166	broad.mit.edu	37	chr13	95364316	95364316	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggacatgctctcgccctgCcgcggctgcagcccgccgcc	12	19	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95364316	T	T	95364316	1	4	101	0	1	0	0	0	0	0	0	0	15064	754	26	4		4	SOX21	13	95364316	5'UTR	SNP	C	TCGA-38-4630-01A-01D-1265-08	313458	95364316	19805562	231	99128											
FARP1	10160	broad.mit.edu	37	chr13	99092214	99092214	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttatcttctcttgcccacaGattgaggagagcgaagacga	11	9	2	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99092214	A	A	99092214	5	1	101	1	0	0	0	0	0	0	1	0	5733	956	33	4	2738	4	FARP1	13	99092214	Splice_Site	SNP	G	TCGA-38-4630-01A-01D-1265-08	3727898	99092214	16077664	232	99129											
MCF2L	23263	broad.mit.edu	37	chr13	113738167	113738167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttggtgctcaggacaggcGtggctgcggcgtctccaagt	16	11	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113738167	A	A	113738167	1	1	101	0	1	0	0	0	0	0	0	0	9472	1160	40	4		4	MCF2L	13	113738167	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	14645953	113738167	1431711	233	99130											
NFATC4	4776	broad.mit.edu	37	chr14	24843028	24843028	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacacgtgccccagggcggcGggaaggtcgtctcagtacag	15	12	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24843028	A	A	24843028	3	1	101	1	0	0	0	0	1	0	0	0	10460	1116	39	4	1898	4	NFATC4	14	24843028	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08		24843028	82506512	234	99131											
MIA2	117153	broad.mit.edu	37	chr14	39717345	39717345	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagttcatacagtctgtcaGgttggtatgaaaatatttac	8	5	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39717345	C	C	39717345	3	2	101	1	0	0	0	0	1	0	0	0	9657	1014	35	4	1581	4	MIA2	14	39717345	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	14874317	39717345	67632195	235	99132											
FAM179B	23116	broad.mit.edu	37	chr14	45489973	45489973	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggagttggttgtgtctatAgtattgctaaattttacacg	11	4	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45489973	T	T	45489973	1	4	101	0	1	0	0	0	0	0	0	0	5551	435	15	5		5	FAM179B	14	45489973	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	5772628	45489973	61859567	236	99133											
SDCCAG1	9147	broad.mit.edu	37	chr14	50246603	50246603	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctactattggtatataatgtCcttgcttaacttttctttaa	4	7	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50246603	T	T	50246603	1	4	101	0	1	0	0	0	0	0	0	0	14070	870	30	4		4	SDCCAG1	14	50246603	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	4756630	50246603	57102937	237	99134											
PLEK2	26499	broad.mit.edu	37	chr14	67862368	67862368	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggacgccgggcagcaaaaatGacggggccccgggagaatct	16	11	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67862368	T	T	67862368	1	4	101	0	1	0	0	0	0	0	0	0	12149	1305	45	3		3	PLEK2	14	67862368	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	17615765	67862368	39487172	238	99135											
ADAM21	8747	broad.mit.edu	37	chr14	70924502	70924502	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcacctacacagatgacCgtgcactcctggaggatcag	10	12	2	2	rs144574931	byFrequency	TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70924502	T	T	70924502	3	4	101	1	0	0	0	0	1	0	0	0	243	652	23	4	288	4	ADAM21	14	70924502	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	3062134	70924502	36425038	239	99136											
HEATR4	399671	broad.mit.edu	37	chr14	73985933	73985933	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttctccctgggttccTaatcaccaggatcagaccca	6	15	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73985933	C	C	73985933	1	2	101	0	1	0	0	0	0	0	0	0	7097	1537	53	5		5	HEATR4	14	73985933	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	3061431	73985933	33363607	240	99137											
C14orf178	283579	broad.mit.edu	37	chr14	78235012	78235012	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaacctgctgaccccacttCtttcccgatttaattattct	4	13	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78235012	A	A	78235012	1	1	101	0	1	0	0	0	0	0	0	0	1774	928	32	3		3	C14orf178	14	78235012	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	4249079	78235012	29114528	241	99138											
DIO2	1734	broad.mit.edu	37	chr14	80677711	80677712	+	Frame_Shift_Ins	INS	-	TCAA	TCAA													tcaacagcagcaccacgtgcINSttgagcagaatgaccgagtc							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCAA	80677712	TCAA	TCAA	80677711	7	5	101	1	0	1	1	0	0	0	0	0	4565	796	28	0	836	0	DIO2	14	80677711	Frame_Shift_Ins	INS	-	TCGA-38-4630-01A-01D-1265-08	2442699	80677711	26671829	242	99139											
DYNC1H1	1778	broad.mit.edu	37	chr14	102516518	102516518	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtcaagcagacaaacaccGagaagaaggccagtgtggta	14	8	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102516518	T	T	102516518	4	4	101	1	0	0	0	0	0	1	0	0	4881	1059	37	3	14101	3	DYNC1H1	14	102516518	Nonsense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	21838807	102516518	4833022	243	99140											
AHNAK2	113146	broad.mit.edu	37	chr14	105418953	105418953	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttccgccttggggcctttCaggtccagcttggggccctt	12	14	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105418953	G	G	105418953	2	3	101	1	0	0	0	0	0	0	0	1	415	813	29	4		4	AHNAK2	14	105418953	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	2902435	105418953	1930587	244	99141											
AHNAK2	113146	broad.mit.edu	37	chr14	105419198	105419198	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagaggctcacgtcggcctCcaccttcggcgcagacacat	12	15	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105419198	G	G	105419198	3	3	101	1	0	0	0	0	1	0	0	0	415	864	30	4	14801	4	AHNAK2	14	105419198	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	245	105419198	1930342	245	99142											
UNC13C	440279	broad.mit.edu	37	chr15	54793192	54793192	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtaggttaaataaaaTgagtcttctttttctctggg	9	5	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54793192	A	A	54793192	1	1	101	0	1	0	0	0	0	0	0	0	17112	1479	51	5		5	UNC13C	15	54793192	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08		54793192	47738200	246	99143											
CGNL1	84952	broad.mit.edu	37	chr15	57815642	57815642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacccgttcctgtggctaCctggttagtaggtgacagca	12	12	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57815642	A	A	57815642	1	1	101	0	1	0	0	0	0	0	0	0	3334	522	18	3		3	CGNL1	15	57815642	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	3022450	57815642	44715750	247	99144											
TMEM8A	58986	broad.mit.edu	37	chr16	424341	424341	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgagcagcagtgtggccgcCctctgctgggccaccgtctg	15	14	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	424341	G	G	424341	3	3	101	1	0	0	0	0	1	0	0	0	16337	622	22	4	696	4	TMEM8A	16	424341	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08		424341	89930412	248	99145											
AMDHD2	51005	broad.mit.edu	37	chr16	2578341	2578341	+	Frame_Shift_Del	DEL	C	-	-													gcagatggcacgcacaccaaCcccgccgccctgcggatcgc							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2578341	-	-	2578341	7	5	101	1	0	1	0	1	0	0	0	0	568	506	18	0	848	0	AMDHD2	16	2578341	Frame_Shift_Del	DEL	C	TCGA-38-4630-01A-01D-1265-08	2154000	2578341	87776412	249	99146											
SMG1	23049	broad.mit.edu	37	chr16	18826741	18826741	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacttatgttttataaattCtgaccagaaggcattcttac	6	7	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18826741	G	G	18826741	1	3	101	0	1	0	0	0	0	0	0	0	14909	928	32	4		4	SMG1	16	18826741	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	16248400	18826741	71528012	250	99147											
GPR139	124274	broad.mit.edu	37	chr16	20043946	20043946	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttgtaggaggacttctgtCttcttgccaccagctgggag	13	9	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20043946	A	A	20043946	3	1	101	1	0	0	0	0	1	0	0	0	6713	913	32	3	892	3	GPR139	16	20043946	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	1217205	20043946	70310807	251	99148											
SHCBP1	79801	broad.mit.edu	37	chr16	46629580	46629580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagtcttaccacggtgaaCaactgggatgaaaatacacg	10	9	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46629580	A	A	46629580	3	1	101	1	0	0	0	0	1	0	0	0	14387	478	17	3	686	3	SHCBP1	16	46629580	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	26585634	46629580	43725173	252	99149											
EXOC3L	283849	broad.mit.edu	37	chr16	67220984	67220984	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctccaaggtcagaaggggCtccagctgggacacatcagc	12	12	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67220984	G	G	67220984	3	3	101	1	0	0	0	0	1	0	0	0	5346	796	28	4	1178	4	EXOC3L	16	67220984	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	20591404	67220984	23133769	253	99150											
PRDM7	11105	broad.mit.edu	37	chr16	90130188	90130188	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggcattccctttaatgtgaGaatcacatattaaaagacaa	7	7	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90130188	C	C	90130188	1	2	101	0	1	0	0	0	0	0	0	0	12567	957	33	4		4	PRDM7	16	90130188	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	22909204	90130188	224565	254	99151											
TSR1	55720	broad.mit.edu	37	chr17	2232642	2232642	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccccattgctaacctgcaGtgtgctgagagaataaaggt	10	9	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2232642	C	C	2232642	3	2	101	1	0	0	0	0	1	0	0	0	16789	1029	36	4	536	4	TSR1	17	2232642	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08		2232642	78962568	255	99152											
DHX33	56919	broad.mit.edu	37	chr17	5366834	5366834	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagaagtactaatagtcaaGaaggaaccaggtaccagctt	9	8	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5366834	A	A	5366834	1	1	101	0	1	0	0	0	0	0	0	0	4546	957	33	4		4	DHX33	17	5366834	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	3134192	5366834	75828376	256	99153											
TP53	7157	broad.mit.edu	37	chr17	7578535	7578535	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccagttggcaaaacatcTtgttgagggcaggggagtac	15	7	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578535	C	C	7578535	3	2	101	1	0	0	0	0	1	0	0	0	16505	1609	56	5	903	5	TP53	17	7578535	Missense_Mutation	SNP	T	TCGA-38-4630-01A-01D-1265-08	2211701	7578535	73616675	257	99154											
MYH2	4620	broad.mit.edu	37	chr17	10442349	10442349	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccttattaagtgcattgtTgttttttatagaagtggaat	9	3	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10442349	C	C	10442349	1	2	101	0	1	0	0	0	0	0	0	0	10129	1827	63	5		5	MYH2	17	10442349	Intron	SNP	T	TCGA-38-4630-01A-01D-1265-08	2863814	10442349	70752861	258	99155											
TOP3A	7156	broad.mit.edu	37	chr17	18208473	18208473	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acccgatgttttcgccttctCtatcacagtcagtccagatc	6	14	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18208473	G	G	18208473	3	3	101	1	0	0	0	0	1	0	0	0	16491	913	32	4	2613	4	TOP3A	17	18208473	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	7766124	18208473	62986737	259	99156											
CYTSB	92521	broad.mit.edu	37	chr17	20160570	20160570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaggaggttgatttggtGctagatgctgtaaatgatgt	15	3	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20160570	T	T	20160570	1	4	101	0	1	0	0	0	0	0	0	0	4243	1334	46	3		3	CYTSB	17	20160570	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	1952097	20160570	61034640	260	99157											
ACCN1	40	broad.mit.edu	37	chr17	31351225	31351225	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcttgttttccttctgcttCttttaactgtcatgtcactc	4	11	5	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31351225	T	T	31351225	1	4	101	0	1	0	0	0	0	0	0	0	128	928	32	4		4	ACCN1	17	31351225	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	11190655	31351225	49843985	261	99158											
RFFL	117584	broad.mit.edu	37	chr17	33343556	33343556	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtcagtcaggtcagacagaGaggcccttcggcctgggaca	15	11	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33343556	C	C	33343556	3	2	101	1	0	0	0	0	1	0	0	0	13358	942	33	4	384	4	RFFL	17	33343556	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	1992331	33343556	47851654	262	99159											
MRPL45	84311	broad.mit.edu	37	chr17	36453340	36453340	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcatacctaggccggggaaGaggcttaggtggacaggacc	16	9	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36453340	A	A	36453340	1	1	101	0	1	0	0	0	0	0	0	0	9903	957	33	4		4	MRPL45	17	36453340	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	3109784	36453340	44741870	263	99160											
IKZF3	22806	broad.mit.edu	37	chr17	37949238	37949238	+	Intron	DEL	A	-	-													cgactatacttgaagctatcAaagcagctcaaacagcagag							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37949238	-	-	37949238	6	5	101	0	1	1	0	1	0	0	0	0	7686	145	5	0		0	IKZF3	17	37949238	Intron	DEL	A	TCGA-38-4630-01A-01D-1265-08	1495898	37949238	43245972	264	99161											
KLHL10	317719	broad.mit.edu	37	chr17	39998143	39998143	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccctggcatttctcccgAcatgatgaagctaatcattg	7	12	2	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39998143	T	T	39998143	3	4	101	1	0	0	0	0	1	0	0	0	8437	275	10	5	269	5	KLHL10	17	39998143	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08	2048905	39998143	41197067	265	99162											
ACBD4	79777	broad.mit.edu	37	chr17	43213400	43213400	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagagcttagtttgcccctCtgggaagtgaatccttggct	11	9	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43213400	T	T	43213400	1	4	101	0	1	0	0	0	0	0	0	0	124	928	32	4		4	ACBD4	17	43213400	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	3215257	43213400	37981810	266	99163											
ARHGAP27	201176	broad.mit.edu	37	chr17	43481669	43481669	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggagagacttcctccCagctcccaacctcatccagc	8	17	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43481669	T	T	43481669	4	4	101	1	0	0	0	0	0	1	0	0	878	595	21	4	1272	4	ARHGAP27	17	43481669	Nonsense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	268269	43481669	37713541	267	99164											
CACNG4	27092	broad.mit.edu	37	chr17	64961111	64961111	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgctcatggccatcgccatCggcaccgactactggctgta	10	15	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64961111	T	T	64961111	2	4	101	1	0	0	0	0	0	0	0	1	2585	874	31	4		4	CACNG4	17	64961111	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	21479442	64961111	16234099	268	99165											
HELZ	9931	broad.mit.edu	37	chr17	65190134	65190134	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattcccctaggtggtgggCggaaatgccaaccattacaa	11	10	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65190134	T	T	65190134	3	4	101	1	0	0	0	0	1	0	0	0	7116	768	27	4	5422	4	HELZ	17	65190134	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	229023	65190134	16005076	269	99166											
PCYT2	5833	broad.mit.edu	37	chr17	79862846	79862846	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggcagggtaagtctagcaGagagcgcccatgaggcggct	17	9	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79862846	T	T	79862846	1	4	101	0	1	0	0	0	0	0	0	0	11706	957	33	3		3	PCYT2	17	79862846	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	14672712	79862846	1332364	270	99167											
FOXK2	3607	broad.mit.edu	37	chr17	80545103	80545103	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtaacacaaaacggcactCacgtggcatcagtccccact	7	15	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80545103	T	T	80545103	3	4	101	1	0	0	0	0	1	0	0	0	6075	826	29	4	1771	4	FOXK2	17	80545103	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	682257	80545103	650107	271	99168											
CXXC1	30827	broad.mit.edu	37	chr18	47808911	47808911	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacggacacacgggcaccGggcggctcccccatctggaa	14	15	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47808911	A	A	47808911	1	1	101	0	1	0	0	0	0	0	0	0	4130	1131	39	4		4	CXXC1	18	47808911	3'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08		47808911	30268337	272	99169											
CDH19	28513	broad.mit.edu	37	chr18	64236022	64236022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcaagattttctttttAtgtatgttaattattcccca	3	6	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64236022	G	G	64236022	1	3	101	0	1	0	0	0	0	0	0	0	3134	464	16	5		5	CDH19	18	64236022	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	16427111	64236022	13841226	273	99170											
ATP8B3	148229	broad.mit.edu	37	chr19	1800443	1800443	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagacaagcaccacggagatGaagatctggaaggcagacgc	13	10	1	5			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1800443	A	A	1800443	2	1	101	1	0	0	0	0	0	0	0	1	1200	1281	45	4		4	ATP8B3	19	1800443	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08		1800443	57328540	274	99171											
ZNF556	80032	broad.mit.edu	37	chr19	2877779	2877779	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaggtgtcagaaatcctttCgagtccatatgatcatgcac	8	10	3	2	rs139842259		TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2877779	T	T	2877779	4	4	101	1	0	0	0	0	0	1	0	0	18114	876	31	4	837	4	ZNF556	19	2877779	Nonsense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	1077336	2877779	56251204	275	99172											
SLC25A23	79085	broad.mit.edu	37	chr19	6454687	6454687	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcagcttctcttgctttgaGaactcgtccggcactgtcag	10	12	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6454687	A	A	6454687	2	1	101	1	0	0	0	0	0	0	0	1	14600	933	33	4		4	SLC25A23	19	6454687	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	3576908	6454687	52674296	276	99173											
LDLR	3949	broad.mit.edu	37	chr19	11224164	11224164	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagccttggcccgcaggtGagatgagggctcctggcgct	16	12	0	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11224164	T	T	11224164	1	4	101	0	1	0	0	0	0	0	0	0	8776	1305	45	3		3	LDLR	19	11224164	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	4769477	11224164	47904819	277	99174											
KANK2	25959	broad.mit.edu	37	chr19	11304855	11304855	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactcaaccgcgtctgctctCagaccctccagagcagggct	9	16	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11304855	G	G	11304855	1	3	101	0	1	0	0	0	0	0	0	0	8047	841	29	4		4	KANK2	19	11304855	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	80691	11304855	47824128	278	99175											
COMP	1311	broad.mit.edu	37	chr19	18895273	18895273	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagcagcaggtggtgggcGgccagggggatccggatgag	23	7	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18895273	A	A	18895273	1	1	101	0	1	0	0	0	0	0	0	0	3756	1131	39	4		4	COMP	19	18895273	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	7590418	18895273	40233710	279	99176											
GATAD2A	54815	broad.mit.edu	37	chr19	19612198	19612198	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggccaaggccgagcccacCgctgccccacaccccgtgct	10	21	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19612198	T	T	19612198	2	4	101	1	0	0	0	0	0	0	0	1	6322	639	23	4		4	GATAD2A	19	19612198	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	716925	19612198	39516785	280	99177											
CAPNS1	826	broad.mit.edu	37	chr19	36633433	36633433	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccattcactaccacccctCattcttttcctcatcaagct	1	19	5	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36633433	T	T	36633433	1	4	101	0	1	0	0	0	0	0	0	0	2659	841	29	4		4	CAPNS1	19	36633433	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	17021235	36633433	22495550	281	99178											
GGN	199720	broad.mit.edu	37	chr19	38877262	38877262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccctccgcgagccctgcCggccgtctggccctggttgc	13	20	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38877262	T	T	38877262	3	4	101	1	0	0	0	0	1	0	0	0	6422	652	23	4	1326	4	GGN	19	38877262	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	2243829	38877262	20251721	282	99179											
RYR1	6261	broad.mit.edu	37	chr19	38997204	38997204	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgagggcgcccatgccGcccccacgctacccccgtgg	13	18	0	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38997204	A	A	38997204	1	1	101	0	1	0	0	0	0	0	0	0	13879	1102	38	4		4	RYR1	19	38997204	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	119942	38997204	20131779	283	99180											
FCGBP	8857	broad.mit.edu	37	chr19	40433949	40433949	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcagaatggatcaccaccGcatgctggaagatcttgctg	11	10	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40433949	A	A	40433949	3	1	101	1	0	0	0	0	1	0	0	0	5835	1087	38	4	16037	4	FCGBP	19	40433949	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	1436745	40433949	18695034	284	99181											
SPTBN4	57731	broad.mit.edu	37	chr19	41008236	41008236	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtcaagtgaggcccagctCtggagggagggtgggcaggg	20	8	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41008236	T	T	41008236	1	4	101	0	1	0	0	0	0	0	0	0	15239	928	32	4		4	SPTBN4	19	41008236	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	574287	41008236	18120747	285	99182											
CEACAM3	1084	broad.mit.edu	37	chr19	42314009	42314009	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctttcctagaaccagCatccagcgtgacctcaagga	8	14	1	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42314009	G	G	42314009	3	3	101	1	0	0	0	0	1	0	0	0	3223	709	25	4	563	4	CEACAM3	19	42314009	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	1305773	42314009	16814974	286	99183											
MEGF8	1954	broad.mit.edu	37	chr19	42849059	42849059	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgttttttctcaaatgcatCtttatcactcttatgtttac	3	8	4	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42849059	A	A	42849059	1	1	101	0	1	0	0	0	0	0	0	0	9556	928	32	3		3	MEGF8	19	42849059	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	535050	42849059	16279924	287	99184											
NOVA2	4858	broad.mit.edu	37	chr19	46443289	46443289	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggagatctggatgcgagcGcccgtcagctcctggtactc	13	12	2	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46443289	A	A	46443289	2	1	101	1	0	0	0	0	0	0	0	1	10650	1074	38	4		4	NOVA2	19	46443289	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	3594230	46443289	12685694	288	99185											
RPS11	6205	broad.mit.edu	37	chr19	50000747	50000747	+	Intron	DEL	C	-	-													aaggaaccgcccgcccaaggCtcactcctttatctttccta							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50000747	-	-	50000747	6	5	101	0	1	1	0	1	0	0	0	0	13732	812	28	0		0	RPS11	19	50000747	Intron	DEL	C	TCGA-38-4630-01A-01D-1265-08	3557458	50000747	9128236	289	99186											
SIGLEC9	27180	broad.mit.edu	37	chr19	51629341	51629341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtctttctgtcccagaccCgcctcagaacttgaccatga	7	14	3	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51629341	A	A	51629341	3	1	101	1	0	0	0	0	1	0	0	0	14428	652	23	1	714	1	SIGLEC9	19	51629341	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	1628594	51629341	7499642	290	99187											
SIGLEC7	27036	broad.mit.edu	37	chr19	51645442	51645442	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgggtggtggacggtggatCtcccagggctgacccagccc	16	13	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51645442	T	T	51645442	1	4	101	0	1	0	0	0	0	0	0	0	14426	928	32	4		4	SIGLEC7	19	51645442	5'Flank	SNP	C	TCGA-38-4630-01A-01D-1265-08	16101	51645442	7483541	291	99188											
CSNK2A1	1457	broad.mit.edu	37	chr20	480620	480621	+	Intron	INS	-	T	T													gcaaaaaaaaaaaaaaaaaaINSttttttcagagtatttcaac					rs205904	by1000genomes	TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	480621	T	T	480620	6	5	101	0	1	1	1	0	0	0	0	0	3991	116	4	0		0	CSNK2A1	20	480620	Intron	INS	-	TCGA-38-4630-01A-01D-1265-08		480620	62544900	292	99189											
SLC23A2	9962	broad.mit.edu	37	chr20	4865548	4865548	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattttaccttttaagaagaAttttctccctgtttttatta	3	7	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4865548	T	T	4865548	1	4	101	0	1	0	0	0	0	0	0	0	14577	116	4	5		5	SLC23A2	20	4865548	Intron	SNP	A	TCGA-38-4630-01A-01D-1265-08	4384928	4865548	58159972	293	99190											
CDS2	8760	broad.mit.edu	37	chr20	5170850	5170850	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctcatctgatcgacaaaggGatgctgacatccaccacaga	8	12	2	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5170850	C	C	5170850	2	2	101	1	0	0	0	0	0	0	0	1	3208	1161	41	4		4	CDS2	20	5170850	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	305302	5170850	57854670	294	99191											
TRMT6	51605	broad.mit.edu	37	chr20	5921732	5921732	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccaggtttcagacagcctGaggttgatgacccctcccct	10	14	1	4			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5921732	A	A	5921732	2	1	101	1	0	0	0	0	0	0	0	1	16693	1277	45	4		4	TRMT6	20	5921732	Silent	SNP	G	TCGA-38-4630-01A-01D-1265-08	750882	5921732	57103788	295	99192											
PLCB1	23236	broad.mit.edu	37	chr20	8862202	8862202	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatatctctttcagagaGtttctatgggagtgggtata	11	4	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8862202	A	A	8862202	1	1	101	0	1	0	0	0	0	0	0	0	12122	1044	36	4		4	PLCB1	20	8862202	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	2940470	8862202	54163318	296	99193											
MKKS	8195	broad.mit.edu	37	chr20	10394084	10394084	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaattcttttcaagacagAaagtgtggtcctgactctct	7	9	3	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10394084	C	C	10394084	3	2	101	1	0	0	0	0	1	0	0	0	9693	246	9	5	1649	5	MKKS	20	10394084	Missense_Mutation	SNP	A	TCGA-38-4630-01A-01D-1265-08	1531882	10394084	52631436	297	99194											
RRBP1	6238	broad.mit.edu	37	chr20	17616230	17616230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctggttcaaggcatccCgcaggatggagttctcctgc	13	12	2	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17616230	A	A	17616230	3	1	101	1	0	0	0	0	1	0	0	0	13789	652	23	1	1891	1	RRBP1	20	17616230	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	7222146	17616230	45409290	298	99195											
ACSS1	84532	broad.mit.edu	37	chr20	24994617	24994617	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctcatccatgaggacggGgacgatgccaaagaagggcc	13	11	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24994617	A	A	24994617	3	1	101	1	0	0	0	0	1	0	0	0	188	1232	43	4	661	4	ACSS1	20	24994617	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	7378387	24994617	38030903	299	99196											
FITM2	128486	broad.mit.edu	37	chr20	42939843	42939843	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctctcggccaccgtatcGcccttcgcccggacctgcgc	10	21	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42939843	A	A	42939843	1	1	101	0	1	0	0	0	0	0	0	0	5956	1102	38	4		4	FITM2	20	42939843	5'UTR	SNP	G	TCGA-38-4630-01A-01D-1265-08	17945226	42939843	20085677	300	99197											
DDX27	55661	broad.mit.edu	37	chr20	47845540	47845540	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaggagaggcctttgtgttGattgaatccacttaaaaact	9	8	0	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47845540	C	C	47845540	1	2	101	0	1	0	0	0	0	0	0	0	4387	1305	45	4		4	DDX27	20	47845540	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	4905697	47845540	15179980	301	99198											
C20orf177	63939	broad.mit.edu	37	chr20	58519680	58519680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagaagtaagctaattGctagtgctctgtccaagcca	11	9	1	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58519680	T	T	58519680	3	4	101	1	0	0	0	0	1	0	0	0	2118	1319	46	3	684	3	C20orf177	20	58519680	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	10674140	58519680	4505840	302	99199											
BAGE2	85319	broad.mit.edu	37	chr21	11047544	11047544	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagacaaaaagtatgataCcctttgtcacacgtatcaca	6	9	2	3			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11047544	A	A	11047544	1	1	101	0	1	0	0	0	0	0	0	0	1297	522	18	3		3	BAGE2	21	11047544	3'UTR	SNP	C	TCGA-38-4630-01A-01D-1265-08		11047544	37082351	303	99200											
CLIC6	54102	broad.mit.edu	37	chr21	36088931	36088931	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcattgagagcctgtttttCttctctaaaacattagttta	5	7	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36088931	T	T	36088931	1	4	101	0	1	0	0	0	0	0	0	0	3562	928	32	4		4	CLIC6	21	36088931	3'UTR	SNP	C	TCGA-38-4630-01A-01D-1265-08	25041387	36088931	12040964	304	99201											
CABIN1	23523	broad.mit.edu	37	chr22	24451495	24451495	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgacgccagttaacgtgatCcagccaagcactgtcagcac	10	13	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24451495	A	A	24451495	2	1	101	1	0	0	0	0	0	0	0	1	2554	845	30	3		3	CABIN1	22	24451495	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08		24451495	26853071	305	99202											
ADRBK2	157	broad.mit.edu	37	chr22	26118409	26118409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcacagaaacagcaacGgcctctagcacccagaaaca	7	14	3	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26118409	T	T	26118409	3	4	101	1	0	0	0	0	1	0	0	0	344	1116	39	1	2141	1	ADRBK2	22	26118409	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	1666914	26118409	25186157	306	99203											
ATF4	468	broad.mit.edu	37	chr22	39917921	39917922	+	Frame_Shift_Ins	INS	-	C	C													tgacacttgtgatctctttgINScccccctagtccaggagact							TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39917922	C	C	39917921	7	5	101	1	0	1	1	0	0	0	0	0	1086	1319	46	0	376	0	ATF4	22	39917921	Frame_Shift_Ins	INS	-	TCGA-38-4630-01A-01D-1265-08	13799512	39917921	11386645	307	99204											
XPNPEP3	63929	broad.mit.edu	37	chr22	41322589	41322589	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgtatgtaattgtgtgTggggggttttttgttttaag	14	0	0	1	rs138316056	by1000genomes	TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41322589	G	G	41322589	1	3	101	0	1	0	0	0	0	0	0	0	17571	1711	59	5		5	XPNPEP3	22	41322589	3'UTR	SNP	T	TCGA-38-4630-01A-01D-1265-08	1404668	41322589	9981977	308	99205											
XPNPEP3	63929	broad.mit.edu	37	chr22	41347291	41347291	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccgcccccacctccgcctCgcgcgccagtaaggggtggg	13	19	0	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41347291	T	T	41347291	1	4	101	0	1	0	0	0	0	0	0	0	17571	899	31	4		4	XPNPEP3	22	41347291	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	24702	41347291	9957275	309	99206											
MEI1	150365	broad.mit.edu	37	chr22	42099416	42099416	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtcacgcaactggtgtctCaggatcagagagtctgcatc	12	10	4	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42099416	T	T	42099416	4	4	101	1	0	0	0	0	0	1	0	0	9558	827	29	4	262	4	MEI1	22	42099416	Nonsense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08	752125	42099416	9205150	310	99207											
NLGN4X	57502	broad.mit.edu	37	chrX	5827179	5827179	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcactctcttggggtcccCgccaaaggctcccacattct	9	16	3	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5827179	T	T	5827179	3	4	101	1	0	0	0	0	1	0	0	0	10559	652	23	4	1735	4	NLGN4X	23	5827179	Missense_Mutation	SNP	C	TCGA-38-4630-01A-01D-1265-08		5827179	149443381	311	99208											
ARX	170302	broad.mit.edu	37	chrX	25033723	25033723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagctctgcgcggctccCagcaaccgcattttgcacgg	12	15	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25033723	A	A	25033723	2	1	101	1	0	0	0	0	0	0	0	1	1008	581	21	2		2	ARX	23	25033723	Silent	SNP	C	TCGA-38-4630-01A-01D-1265-08	19206544	25033723	130236837	312	99209											
USP9X	8239	broad.mit.edu	37	chrX	41025388	41025388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcaaagctgtgaattgtcGagaaggaaaactagtagcaa	10	6	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41025388	A	A	41025388	3	1	101	1	0	0	0	0	1	0	0	0	17217	1058	37	4	2307	4	USP9X	23	41025388	Missense_Mutation	SNP	G	TCGA-38-4630-01A-01D-1265-08	15991665	41025388	114245172	313	99210											
SSX7	280658	broad.mit.edu	37	chrX	52674309	52674309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcctgggccacaaagggCgaatccgtcaaaaaaaaaaa	10	10	1	0			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52674309	A	A	52674309	1	1	101	0	1	0	0	0	0	0	0	0	15327	783	27	3		3	SSX7	23	52674309	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	11648921	52674309	102596251	314	99211											
TMEM164	84187	broad.mit.edu	37	chrX	109352126	109352126	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtgctcttcagaacatttCagttaatacaaaatatgcca	6	8	3	1			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109352126	A	A	109352126	1	1	101	0	1	0	0	0	0	0	0	0	16202	841	29	3		3	TMEM164	23	109352126	Intron	SNP	C	TCGA-38-4630-01A-01D-1265-08	56677817	109352126	45918434	315	99212											
SRPK3	26576	broad.mit.edu	37	chrX	153047752	153047752	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagcctgtctgcagacccGcacaatgggcttgcatccct	10	14	1	2			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153047752	A	A	153047752	1	1	101	0	1	0	0	0	0	0	0	0	15279	1102	38	4		4	SRPK3	23	153047752	Intron	SNP	G	TCGA-38-4630-01A-01D-1265-08	43695626	153047752	2222808	316	99213											
NOC2L	26155	broad.mit.edu	37	chr1	880905	880905	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcaggccccacctctctcCgagaatccctcggtgtcgtc	9	18	1	1	rs149040522		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	880905	A	A	880905	2	1	102	1	0	0	0	0	0	0	0	1	10608	639	23	1		1	NOC2L	1	880905	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08		880905	248369716	1	99214											
NOC2L	26155	broad.mit.edu	37	chr1	889421	889421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagccttgatgtccacaCgaagcttcccccagagcggg	12	13	0	2	rs3828050		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	889421	A	A	889421	3	1	102	1	0	0	0	0	1	0	0	0	10608	536	19	3	1561	3	NOC2L	1	889421	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	8516	889421	248361200	2	99215											
MEGF6	1953	broad.mit.edu	37	chr1	3440803	3440803	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgtgggttcggcattcGtccacatctgagcaggaatg	13	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3440803	C	C	3440803	3	2	102	1	0	0	0	0	1	0	0	0	9555	1136	40	4	4268	4	MEGF6	1	3440803	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2551382	3440803	245809818	3	99216											
CHD5	26038	broad.mit.edu	37	chr1	6184629	6184629	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggtcagcacgtgctgcctgGagaggccctcccggggcacg	17	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6184629	C	C	6184629	3	2	102	1	0	0	0	0	1	0	0	0	3359	1174	41	4	1425	4	CHD5	1	6184629	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2743826	6184629	243065992	4	99217											
CHD5	26038	broad.mit.edu	37	chr1	6194357	6194357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggcattggtgggctcCcctctcctctctgactctgc	13	14	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6194357	A	A	6194357	1	1	102	0	1	0	0	0	0	0	0	0	3359	638	22	2		2	CHD5	1	6194357	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	9728	6194357	243056264	5	99218											
RNF207	388591	broad.mit.edu	37	chr1	6269923	6269923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggggtccggggggtagGcatggtgggaggtggcaggg	26	5	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6269923	T	T	6269923	1	4	102	0	1	0	0	0	0	0	0	0	13585	1218	42	3		3	RNF207	1	6269923	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	75566	6269923	242980698	6	99219											
KIF1B	23095	broad.mit.edu	37	chr1	10431226	10431226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atatctctccaattggacggGatccctctgagtccagtttc	8	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10431226	T	T	10431226	3	4	102	1	0	0	0	0	1	0	0	0	8354	1174	41	3	6369	3	KIF1B	1	10431226	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4161303	10431226	238819395	7	99220											
MTOR	2475	broad.mit.edu	37	chr1	11254510	11254510	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctttaaggctctgctcctCctgacaggactgggagggca	12	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11254510	A	A	11254510	1	1	102	0	1	0	0	0	0	0	0	0	10048	870	30	3		3	MTOR	1	11254510	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	823284	11254510	237996111	8	99221											
MTOR	2475	broad.mit.edu	37	chr1	11272478	11272478	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaatgatccgggaggcaTagtcagtgaaatccagggac	15	7	1	3	rs151082401		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11272478	C	C	11272478	3	2	102	1	0	0	0	0	1	0	0	0	10048	1406	49	5	4341	5	MTOR	1	11272478	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	17968	11272478	237978143	9	99222											
PTCHD2	57540	broad.mit.edu	37	chr1	11579307	11579307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctgtgtgtgacgtcaGcagcactgtgatacctgggt	12	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11579307	T	T	11579307	1	4	102	0	1	0	0	0	0	0	0	0	12839	986	34	3		3	PTCHD2	1	11579307	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	306829	11579307	237671314	10	99223											
PTCHD2	57540	broad.mit.edu	37	chr1	11591678	11591678	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgagtgcaaggagctgcccGagcccaacctgctcccgggg	14	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11591678	T	T	11591678	4	4	102	1	0	0	0	0	0	1	0	0	12839	1059	37	3	3348	3	PTCHD2	1	11591678	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	12371	11591678	237658943	11	99224											
PTCHD2	57540	broad.mit.edu	37	chr1	11596643	11596643	+	Missense_Mutation	SNP	T	C	C													gacttccttcctcaaggcccTgggtgccgtgctgctggcag							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11596643	C	C	11596643	3	2	102	1	0	0	0	0	1	0	0	0	12839	1580	55	5	4157	5	PTCHD2	1	11596643	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	4965	11596643	237653978	12	99225	428	2									
PTCHD2	57540	broad.mit.edu	37	chr1	11596647	11596647	+	Silent	SNP	T	G	G													tccttcctcaaggccctgggTgccgtgctgctggcaggggc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11596647	G	G	11596647	2	3	102	1	0	0	0	0	0	0	0	1	12839	1683	59	5		5	PTCHD2	1	11596647	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	4	11596647	237653974	13	99226	428	2									
VPS13D	55187	broad.mit.edu	37	chr1	12328835	12328835	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacagccactttgagaggcGgctcaatgtcagcacaaggc	12	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12328835	C	C	12328835	3	2	102	1	0	0	0	0	1	0	0	0	17319	1116	39	4	1932	4	VPS13D	1	12328835	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	732188	12328835	236921786	14	99227											
PRAMEF1	65121	broad.mit.edu	37	chr1	12854318	12854318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggtttagtacacctgtGctgtagtaagctggtcaatt	12	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12854318	T	T	12854318	3	4	102	1	0	0	0	0	1	0	0	0	12526	1319	46	3	548	3	PRAMEF1	1	12854318	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	525483	12854318	236396303	15	99228											
LOC649330	649330	broad.mit.edu	37	chr1	12907903	12907903	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcagccaggttaatatcTacaacctggctagcaatcat	7	11	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12907903	C	C	12907903	2	2	102	1	0	0	0	0	0	0	0	1	8969	1509	53	5		5	LOC649330	1	12907903	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	53585	12907903	236342718	16	99229											
PDPN	10630	broad.mit.edu	37	chr1	13936946	13936946	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgccaacttcagaaagcaCagtccacgcgcaagaacaaa	7	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13936946	G	G	13936946	3	3	102	1	0	0	0	0	1	0	0	0	11782	478	17	4	504	4	PDPN	1	13936946	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1029043	13936946	235313675	17	99230											
TMEM51	55092	broad.mit.edu	37	chr1	15541749	15541749	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaagaccgaggtgggtggcGgcatcctcaagagcaagacc	14	11	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15541749	C	C	15541749	3	2	102	1	0	0	0	0	1	0	0	0	16300	1116	39	4	168	4	TMEM51	1	15541749	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1604803	15541749	233708872	18	99231											
HSPB7	27129	broad.mit.edu	37	chr1	16343786	16343786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccttctcttggggcaaGgggcggctcccccaggccct	14	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16343786	T	T	16343786	1	4	102	0	1	0	0	0	0	0	0	0	7492	1015	35	2		2	HSPB7	1	16343786	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	802037	16343786	232906835	19	99232											
EPHA2	1969	broad.mit.edu	37	chr1	16464386	16464386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggcagtacggaagctgCggctggttaccaggcctgag	15	11	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16464386	A	A	16464386	3	1	102	1	0	0	0	0	1	0	0	0	5209	768	27	3	1708	3	EPHA2	1	16464386	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	120600	16464386	232786235	20	99233											
NBPF1	55672	broad.mit.edu	37	chr1	16892056	16892056	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcagctcagtaatggccaCttggagcaggaatatgatct	10	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16892056	G	G	16892056	1	3	102	0	1	0	0	0	0	0	0	0	10286	580	20	4		4	NBPF1	1	16892056	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	427670	16892056	232358565	21	99234											
NBPF1	55672	broad.mit.edu	37	chr1	16915726	16915726	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaagaatagaaaatggttTacaggcttcctctgtatcag	9	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16915726	G	G	16915726	1	3	102	0	1	0	0	0	0	0	0	0	10286	1769	61	5		5	NBPF1	1	16915726	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	23670	16915726	232334895	22	99235											
PLA2G2A	5320	broad.mit.edu	37	chr1	20302256	20302256	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtactggtactttttattgtAggtcgtcttgtttctagcaa	9	6	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20302256	T	T	20302256	3	4	102	1	0	0	0	0	1	0	0	0	12090	420	15	5	65	5	PLA2G2A	1	20302256	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3386530	20302256	228948365	23	99236											
ALPL	249	broad.mit.edu	37	chr1	21902372	21902372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactgcggaccattcccacGtcttcacatttggtggatac	8	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21902372	A	A	21902372	3	1	102	1	0	0	0	0	1	0	0	0	547	1145	40	4	1178	4	ALPL	1	21902372	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1600116	21902372	227348249	24	99237											
CELA3A	10136	broad.mit.edu	37	chr1	22333450	22333450	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctcactccctcccgctGgtgacatccttcccaacaag	6	19	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22333450	A	A	22333450	3	1	102	1	0	0	0	0	1	0	0	0	3243	1348	47	4	460	4	CELA3A	1	22333450	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	431078	22333450	226917171	25	99238											
CELA3A	10136	broad.mit.edu	37	chr1	22336149	22336149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaattcagaaccagttccGtaaacctcagacatggctca	7	11	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22336149	T	T	22336149	1	4	102	0	1	0	0	0	0	0	0	0	3243	1160	40	3		3	CELA3A	1	22336149	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2699	22336149	226914472	26	99239											
EPHA8	2046	broad.mit.edu	37	chr1	22921714	22921714	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtcccccaaccctggctttCccctgcagggccccgctatg	10	19	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22921714	A	A	22921714	1	1	102	0	1	0	0	0	0	0	0	0	5215	870	30	3		3	EPHA8	1	22921714	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	585565	22921714	226328907	27	99240											
MYOM3	127294	broad.mit.edu	37	chr1	24424320	24424320	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacagccttgtgcctatggCccttcctcaggtctcacgca	9	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24424320	T	T	24424320	1	4	102	0	1	0	0	0	0	0	0	0	10187	754	26	4		4	MYOM3	1	24424320	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1502606	24424320	224826301	28	99241											
SLC30A2	7780	broad.mit.edu	37	chr1	26371649	26371649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatggcctgcaagtccaggCcaggtcggggcagaggaatc	15	11	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26371649	A	A	26371649	3	1	102	1	0	0	0	0	1	0	0	0	14669	739	26	3	1036	3	SLC30A2	1	26371649	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1947329	26371649	222878972	29	99242											
CNKSR1	10256	broad.mit.edu	37	chr1	26513790	26513790	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaaagggagaggaagggtGatggggtagcagtgggaggt	22	2	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26513790	A	A	26513790	1	1	102	0	1	0	0	0	0	0	0	0	3638	1305	45	4		4	CNKSR1	1	26513790	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	142141	26513790	222736831	30	99243											
RPS6KA1	6195	broad.mit.edu	37	chr1	26887237	26887237	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactccatgggaagaacctGgtttttagtgacggctacgt	11	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26887237	T	T	26887237	2	4	102	1	0	0	0	0	0	0	0	1	13761	1335	47	2		2	RPS6KA1	1	26887237	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	373447	26887237	222363384	31	99244											
ARID1A	8289	broad.mit.edu	37	chr1	27100358	27100358	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcagccccttccccagccAgcagactacaatgtatcaac	7	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27100358	T	T	27100358	3	4	102	1	0	0	0	0	1	0	0	0	915	188	7	5	4136	5	ARID1A	1	27100358	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	213121	27100358	222150263	32	99245											
C1orf38	9473	broad.mit.edu	37	chr1	28203094	28203094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatggagtccttgtctcCgcaggctccatctatgagat	11	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28203094	T	T	28203094	1	4	102	0	1	0	0	0	0	0	0	0	2061	667	23	4		4	C1orf38	1	28203094	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1102736	28203094	221047527	33	99246											
PTPRU	10076	broad.mit.edu	37	chr1	29581714	29581714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggtagaagggagagtgGggctaccctccaggagccct	16	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29581714	T	T	29581714	1	4	102	0	1	0	0	0	0	0	0	0	12921	1247	43	2		2	PTPRU	1	29581714	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1378620	29581714	219668907	34	99247											
MATN1	4146	broad.mit.edu	37	chr1	31194360	31194360	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcctgtggacagcggctgGatacggcgcacagcctgcag	16	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31194360	T	T	31194360	2	4	102	1	0	0	0	0	0	0	0	1	9425	1164	41	3		3	MATN1	1	31194360	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1612646	31194360	218056261	35	99248											
CLSPN	63967	broad.mit.edu	37	chr1	36217085	36217085	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcttcttgcagtttagcTtttaacacctgaagcttttc	6	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36217085	A	A	36217085	3	1	102	1	0	0	0	0	1	0	0	0	3592	1606	56	5	2289	5	CLSPN	1	36217085	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	5022725	36217085	213033536	36	99249											
OSCP1	127700	broad.mit.edu	37	chr1	36885931	36885931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatttcatcctggtgggCtatttagattattaaatttg	9	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36885931	A	A	36885931	1	1	102	0	1	0	0	0	0	0	0	0	11380	812	28	3		3	OSCP1	1	36885931	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	668846	36885931	212364690	37	99250											
MACF1	23499	broad.mit.edu	37	chr1	39782811	39782811	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatagctgtagaccgtgtccTtgtttcccaccttagactga	8	11	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39782811	G	G	39782811	1	3	102	0	1	0	0	0	0	0	0	0	9232	1624	56	5		5	MACF1	1	39782811	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	2896880	39782811	209467810	38	99251											
NFYC	4802	broad.mit.edu	37	chr1	41235169	41235169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctgggtttggatggttaGggcaactgtcctgtcctcta	12	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41235169	T	T	41235169	1	4	102	0	1	0	0	0	0	0	0	0	10486	1015	35	2		2	NFYC	1	41235169	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1452358	41235169	208015452	39	99252											
KCNQ4	9132	broad.mit.edu	37	chr1	41304035	41304035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgggcttctattcgcgctGcctgcgctctggcacctcgg	13	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41304035	T	T	41304035	3	4	102	1	0	0	0	0	1	0	0	0	8155	1319	46	3	1982	3	KCNQ4	1	41304035	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	68866	41304035	207946586	40	99253											
CCDC30	728621	broad.mit.edu	37	chr1	43108212	43108212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaaaaaaggaaacttcaGgagcaagtcatagagcaaga	10	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43108212	T	T	43108212	3	4	102	1	0	0	0	0	1	0	0	0	2832	991	35	2	1749	2	CCDC30	1	43108212	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1804177	43108212	206142409	41	99254											
TSPAN1	10103	broad.mit.edu	37	chr1	46650797	46650797	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtagaggtgtgggctGgcatgagtgggtggggactg	20	3	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46650797	A	A	46650797	1	1	102	0	1	0	0	0	0	0	0	0	16758	1363	47	4		4	TSPAN1	1	46650797	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3542585	46650797	202599824	42	99255											
CYB5RL	606495	broad.mit.edu	37	chr1	54653293	54653293	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacccatagcttctccacgGcatcttggagcatcctcaag	8	14	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54653293	A	A	54653293	1	1	102	0	1	0	0	0	0	0	0	0	4163	1218	42	4		4	CYB5RL	1	54653293	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	8002496	54653293	194597328	43	99256											
ACOT11	26027	broad.mit.edu	37	chr1	55050420	55050420	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagacggcgagggataccgGaaccccacggaggtgcagat	16	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55050420	T	T	55050420	2	4	102	1	0	0	0	0	0	0	0	1	149	1161	41	3		3	ACOT11	1	55050420	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	397127	55050420	194200201	44	99257											
ACOT11	26027	broad.mit.edu	37	chr1	55065189	55065189	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccaggagccctttgccCtgcagacagggtctaaatcc	10	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55065189	T	T	55065189	1	4	102	0	1	0	0	0	0	0	0	0	149	696	24	4		4	ACOT11	1	55065189	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	14769	55065189	194185432	45	99258											
DHCR24	1718	broad.mit.edu	37	chr1	55317863	55317863	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgagtgaagggaagatgCctgaccactcacacgtgtct	12	10	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55317863	T	T	55317863	1	4	102	0	1	0	0	0	0	0	0	0	4516	754	26	4		4	DHCR24	1	55317863	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	252674	55317863	193932758	46	99259											
PDE4B	5142	broad.mit.edu	37	chr1	66833714	66833714	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagttacaagttcaggcgTtcttctcctagacaactata	7	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66833714	A	A	66833714	3	1	102	1	0	0	0	0	1	0	0	0	11734	1725	60	5	2040	5	PDE4B	1	66833714	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	11515851	66833714	182416907	47	99260											
LRRC7	57554	broad.mit.edu	37	chr1	70505179	70505179	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaagtgaaagctcaggcGggaagttttccggttaaaaa	12	6	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70505179	A	A	70505179	2	1	102	1	0	0	0	0	0	0	0	1	9107	1103	39	4		4	LRRC7	1	70505179	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3671465	70505179	178745442	48	99261											
LRRC7	57554	broad.mit.edu	37	chr1	70505385	70505385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttaaagacgaggcctaCtcctgtgaagggagaggaga	14	6	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70505385	A	A	70505385	3	1	102	1	0	0	0	0	1	0	0	0	9107	565	20	3	3838	3	LRRC7	1	70505385	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	206	70505385	178745236	49	99262											
PTGER3	5733	broad.mit.edu	37	chr1	71328162	71328162	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagtgaatggataatttGgatatggtgtaatggtgaac	14	1	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71328162	C	C	71328162	1	2	102	0	1	0	0	0	0	0	0	0	12850	1363	47	4		4	PTGER3	1	71328162	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	822777	71328162	177922459	50	99263											
PTGER3	5733	broad.mit.edu	37	chr1	71418563	71418563	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttgcttttttaaaacacAgcactcctgtagttattttc	5	9	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71418563	T	T	71418563	1	4	102	0	1	0	0	0	0	0	0	0	12850	203	7	5		5	PTGER3	1	71418563	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	90401	71418563	177832058	51	99264											
AK5	26289	broad.mit.edu	37	chr1	77987427	77987427	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgaaccttcctccctccCtcagtggatgactgaaggag	9	14	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77987427	T	T	77987427	1	4	102	0	1	0	0	0	0	0	0	0	443	696	24	4		4	AK5	1	77987427	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	6568864	77987427	171263194	52	99265											
LPHN2	23266	broad.mit.edu	37	chr1	82188306	82188306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgatcttgcccttgcctGtaaattggattacgatgaag	9	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82188306	T	T	82188306	1	4	102	0	1	0	0	0	0	0	0	0	9003	1392	48	3		3	LPHN2	1	82188306	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4200879	82188306	167062315	53	99266											
WDR63	126820	broad.mit.edu	37	chr1	85560338	85560338	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtactttataatcatgtaaTgttgtaaacatttataaagt	5	3	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85560338	C	C	85560338	1	2	102	0	1	0	0	0	0	0	0	0	17441	1479	51	5		5	WDR63	1	85560338	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3372032	85560338	163690283	54	99267											
GBP6	163351	broad.mit.edu	37	chr1	89847391	89847391	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgactactacagccagcAgatggcccagcgagtgaagc	12	12	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89847391	T	T	89847391	3	4	102	1	0	0	0	0	1	0	0	0	6340	188	7	5	1032	5	GBP6	1	89847391	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	4287053	89847391	159403230	55	99268											
CDC7	8317	broad.mit.edu	37	chr1	91980576	91980576	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgtgttttgatggtgttAtaaaatcaccagcatgctgc	9	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91980576	G	G	91980576	1	3	102	0	1	0	0	0	0	0	0	0	3114	464	16	5		5	CDC7	1	91980576	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2133185	91980576	157270045	56	99269											
C1orf146	388649	broad.mit.edu	37	chr1	92694937	92694937	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacctccggacaccggaacCgttcgttgccgatggtgatg	13	13	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92694937	T	T	92694937	1	4	102	0	1	0	0	0	0	0	0	0	2023	667	23	4		4	C1orf146	1	92694937	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	714361	92694937	156555684	57	99270											
CCDC18	343099	broad.mit.edu	37	chr1	93687513	93687513	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctagtatgctaatactttAtttttctttctttccttttt	4	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93687513	T	T	93687513	1	4	102	0	1	0	0	0	0	0	0	0	2821	464	16	5		5	CCDC18	1	93687513	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	992576	93687513	155563108	58	99271											
SLC44A3	126969	broad.mit.edu	37	chr1	95330289	95330289	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaatgctatccttttccCtatttccagaagtaaaaatg	4	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95330289	G	G	95330289	1	3	102	0	1	0	0	0	0	0	0	0	14751	696	24	4		4	SLC44A3	1	95330289	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1642776	95330289	153920332	59	99272											
LPPR5	163404	broad.mit.edu	37	chr1	99418782	99418782	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgctgtataattgggcttAcacagggcaaggaaatgtgg	14	5	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99418782	T	T	99418782	4	4	102	1	0	0	0	0	0	1	0	0	9015	389	14	5	516	5	LPPR5	1	99418782	Nonsense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	4088493	99418782	149831839	60	99273											
LPPR4	9890	broad.mit.edu	37	chr1	99772039	99772039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaagcagcagggtgtcCtccaaagcagccccaagaac	10	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99772039	A	A	99772039	3	1	102	1	0	0	0	0	1	0	0	0	9014	681	24	2	1791	2	LPPR4	1	99772039	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	353257	99772039	149478582	61	99274											
AGL	178	broad.mit.edu	37	chr1	100347088	100347088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatctagttgttctttctGcttctcaggtgtatgtggat	9	7	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100347088	T	T	100347088	1	4	102	0	1	0	0	0	0	0	0	0	384	1334	46	3		3	AGL	1	100347088	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	575049	100347088	148903533	62	99275											
SASS6	163786	broad.mit.edu	37	chr1	100588014	100588014	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaaagctaagaagtctAccagaagaccttgctggaat	12	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100588014	C	C	100588014	3	2	102	1	0	0	0	0	1	0	0	0	13962	391	14	5	1796	5	SASS6	1	100588014	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	240926	100588014	148662607	63	99276											
CDC14A	8556	broad.mit.edu	37	chr1	100856434	100856434	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggccagtgaaatgctaacActgtcaaagaaaatccaaac	7	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100856434	T	T	100856434	1	4	102	0	1	0	0	0	0	0	0	0	3086	174	6	5		5	CDC14A	1	100856434	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	268420	100856434	148394187	64	99277											
OLFM3	118427	broad.mit.edu	37	chr1	102462382	102462382	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcctgcattctgatctgGgtttttgcccctctttactc	8	13	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102462382	T	T	102462382	1	4	102	0	1	0	0	0	0	0	0	0	10949	1247	43	2		2	OLFM3	1	102462382	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	1605948	102462382	146788239	65	99278											
COL11A1	1301	broad.mit.edu	37	chr1	103343713	103343713	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacagtcttttcatagccTtttctggactgtaaaataaa	6	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103343713	A	A	103343713	3	1	102	1	0	0	0	0	1	0	0	0	3699	1606	56	5	141	5	COL11A1	1	103343713	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	881331	103343713	145906908	66	99279											
COL11A1	1301	broad.mit.edu	37	chr1	103412437	103412437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctccagctggaccaggagGaccctgaggtcccgggcgcc	14	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103412437	T	T	103412437	3	4	102	1	0	0	0	0	1	0	0	0	3699	1174	41	3	2280	3	COL11A1	1	103412437	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	68724	103412437	145838184	67	99280											
COL11A1	1301	broad.mit.edu	37	chr1	103544219	103544219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttgttacttacttcccGtcagcgatgttaacagttct	6	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103544219	T	T	103544219	3	4	102	1	0	0	0	0	1	0	0	0	3699	1136	40	3	5354	3	COL11A1	1	103544219	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	131782	103544219	145706402	68	99281											
NTNG1	22854	broad.mit.edu	37	chr1	107973450	107973450	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttgcgtgagctgtaaacAcaacactagagggcagcact	10	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107973450	T	T	107973450	3	4	102	1	0	0	0	0	1	0	0	0	10799	159	6	5	1318	5	NTNG1	1	107973450	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	4429231	107973450	141277171	69	99282											
VAV3	10451	broad.mit.edu	37	chr1	108303503	108303503	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcttttggaacattccTaatgaaatgttttaaaaaca	5	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108303503	A	A	108303503	5	1	102	1	0	0	0	0	0	0	1	0	17260	1536	53	5	1720	5	VAV3	1	108303503	Splice_Site	SNP	T	TCGA-38-4631-01A-01D-1753-08	330053	108303503	140947118	70	99283											
SLC25A24	29957	broad.mit.edu	37	chr1	108681711	108681711	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcgagttctcaccaaagcCaatgggtagctggccagctg	12	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108681711	T	T	108681711	2	4	102	1	0	0	0	0	0	0	0	1	14601	593	21	4		4	SLC25A24	1	108681711	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	378208	108681711	140568910	71	99284											
GNAI3	2773	broad.mit.edu	37	chr1	110134684	110134684	+	Missense_Mutation	SNP	G	T	T													ggttccaatacatatgaagaGgcagctgcctatattcaatg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110134684	T	T	110134684	3	4	102	1	0	0	0	0	1	0	0	0	6570	991	35	2	924	2	GNAI3	1	110134684	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1452973	110134684	139115937	72	99285	429	2									
GNAI3	2773	broad.mit.edu	37	chr1	110134687	110134687	+	Silent	SNP	A	T	T													tccaatacatatgaagaggcAgctgcctatattcaatgcca							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110134687	T	T	110134687	2	4	102	1	0	0	0	0	0	0	0	1	6570	175	7	5		5	GNAI3	1	110134687	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	3	110134687	139115934	73	99286	429	2									
AMPD1	270	broad.mit.edu	37	chr1	115231372	115231372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatcaatttctaaaagagGttttcacatattagtgttca	5	6	5	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115231372	T	T	115231372	1	4	102	0	1	0	0	0	0	0	0	0	585	1276	44	3		3	AMPD1	1	115231372	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5096685	115231372	134019249	74	99287											
SIKE1	80143	broad.mit.edu	37	chr1	115317020	115317020	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaaaaggcatgtttatttCtggtatttttactgtccaac	6	6	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115317020	A	A	115317020	1	1	102	0	1	0	0	0	0	0	0	0	14433	928	32	3		3	SIKE1	1	115317020	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	85648	115317020	133933601	75	99288											
IGSF3	3321	broad.mit.edu	37	chr1	117122426	117122426	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagcgggacacgatgctAcagtccagctggaaagctgc	14	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117122426	G	G	117122426	2	3	102	1	0	0	0	0	0	0	0	1	7671	389	14	5		5	IGSF3	1	117122426	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	1805406	117122426	132128195	76	99289											
SPAG17	200162	broad.mit.edu	37	chr1	118642151	118642151	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattgtaagactatgttttgGacagaaaattatatttgtac	7	3	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118642151	A	A	118642151	1	1	102	0	1	0	0	0	0	0	0	0	15095	1189	41	4		4	SPAG17	1	118642151	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1519725	118642151	130608470	77	99290											
PHGDH	26227	broad.mit.edu	37	chr1	120263979	120263979	+	Intron	DEL	G	-	-													ctgcgggcggtttgggggtaGgggggtgagtgcggagactg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120263979	-	-	120263979	6	5	102	0	1	1	0	1	0	0	0	0	11936	1015	35	0		0	PHGDH	1	120263979	Intron	DEL	G	TCGA-38-4631-01A-01D-1753-08	1621828	120263979	128986642	78	99291											
PDE4DIP	9659	broad.mit.edu	37	chr1	145016139	145016139	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatctaggccacatagaaaCagtttacttaaagtagtctg	7	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145016139	T	T	145016139	1	4	102	0	1	0	0	0	0	0	0	0	11737	493	17	4		4	PDE4DIP	1	145016139	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	24752160	145016139	104234482	79	99292											
NBPF10	100132406	broad.mit.edu	37	chr1	145416303	145416303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaactgttttccctcttGtcctcacagctcaccatcat	4	14	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145416303	T	T	145416303	1	4	102	0	1	0	0	0	0	0	0	0	10287	1392	48	3		3	NBPF10	1	145416303	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	400164	145416303	103834318	80	99293											
CHD1L	9557	broad.mit.edu	37	chr1	146747961	146747961	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcactttggaatataccAataccctttgtggaggagaa	8	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146747961	C	C	146747961	1	2	102	0	1	0	0	0	0	0	0	0	3355	145	5	5		5	CHD1L	1	146747961	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1331658	146747961	102502660	81	99294											
LOC200030	200030	broad.mit.edu	37	chr1	148009941	148009941	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagttactaaatgataagggGaggaagaaatggaaacctaa	11	3	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148009941	A	A	148009941	1	1	102	0	1	0	0	0	0	0	0	0	8950	1189	41	4		4	LOC200030	1	148009941	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1261980	148009941	101240680	82	99295											
MTMR11	10903	broad.mit.edu	37	chr1	149903976	149903976	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggagtgattttgatgggtCatgggatggaataaggccga	16	3	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149903976	T	T	149903976	1	4	102	0	1	0	0	0	0	0	0	0	10034	841	29	4		4	MTMR11	1	149903976	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1894035	149903976	99346645	83	99296											
PIP5K1A	8394	broad.mit.edu	37	chr1	151214576	151214576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaaggtagttgctaagtaGgctctctctttcccttttga	9	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151214576	T	T	151214576	1	4	102	0	1	0	0	0	0	0	0	0	12034	1015	35	2		2	PIP5K1A	1	151214576	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1310600	151214576	98036045	84	99297											
S100A5	6276	broad.mit.edu	37	chr1	153512581	153512581	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttgagttccttcctactCagggtcagtttgctaccctc	7	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153512581	G	G	153512581	2	3	102	1	0	0	0	0	0	0	0	1	13892	813	29	4		4	S100A5	1	153512581	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	2298005	153512581	95738040	85	99298											
NUP210L	91181	broad.mit.edu	37	chr1	153965594	153965594	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacaggaaatgtcacaagGcatatctgaggaaggcctta	12	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153965594	A	A	153965594	1	1	102	0	1	0	0	0	0	0	0	0	10856	1218	42	4		4	NUP210L	1	153965594	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	453013	153965594	95285027	86	99299											
FLAD1	80308	broad.mit.edu	37	chr1	154962050	154962050	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcagggtcttctttggggAaaaaggtggcaggtgcccta	16	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154962050	G	G	154962050	3	3	102	1	0	0	0	0	1	0	0	0	5977	247	9	5	1282	5	FLAD1	1	154962050	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	996456	154962050	94288571	87	99300											
SMG5	23381	broad.mit.edu	37	chr1	156243245	156243245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattctgatatcgggctgCacaagagagaaaacgaaggg	12	7	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156243245	A	A	156243245	1	1	102	0	1	0	0	0	0	0	0	0	14910	725	25	3		3	SMG5	1	156243245	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1281195	156243245	93007376	88	99301											
INSRR	3645	broad.mit.edu	37	chr1	156812857	156812857	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaactcaatgcattccCgtgggctggccagctcattc	11	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156812857	T	T	156812857	3	4	102	1	0	0	0	0	1	0	0	0	7844	652	23	4	851	4	INSRR	1	156812857	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	569612	156812857	92437764	89	99302											
OR6Y1	391112	broad.mit.edu	37	chr1	158517437	158517437	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgagtccacagaaccaGcatcctccagccagtgtgcc	9	15	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517437	T	T	158517437	4	4	102	1	0	0	0	0	0	1	0	0	11307	963	34	3	520	3	OR6Y1	1	158517437	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1704580	158517437	90733184	90	99303											
SPTA1	6708	broad.mit.edu	37	chr1	158639649	158639649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggccatagtttgggtagCtgtttaaagatgaagaacag	13	4	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158639649	A	A	158639649	1	1	102	0	1	0	0	0	0	0	0	0	15234	812	28	3		3	SPTA1	1	158639649	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	122212	158639649	90610972	91	99304											
MNDA	4332	broad.mit.edu	37	chr1	158812272	158812272	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccagtcttcagtagaaccCcaccttggtcatagctggta	8	14	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158812272	G	G	158812272	1	3	102	0	1	0	0	0	0	0	0	0	9770	638	22	4		4	MNDA	1	158812272	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	172623	158812272	90438349	92	99305											
FCER1A	2205	broad.mit.edu	37	chr1	159277583	159277583	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttttatcccattgttggTggtgattctgtttgctgtgg	11	5	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159277583	C	C	159277583	3	2	102	1	0	0	0	0	1	0	0	0	5831	1696	59	5	653	5	FCER1A	1	159277583	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	465311	159277583	89973038	93	99306											
COPA	1314	broad.mit.edu	37	chr1	160261322	160261322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaacacatgccaggttgaTgctacacctggtagaagtca	11	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160261322	A	A	160261322	1	1	102	0	1	0	0	0	0	0	0	0	3759	1479	51	5		5	COPA	1	160261322	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	983739	160261322	88989299	94	99307											
SLAMF1	6504	broad.mit.edu	37	chr1	160593822	160593822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcaagtccgagcctgtGgagagaggtcccctgcttac	14	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160593822	T	T	160593822	1	4	102	0	1	0	0	0	0	0	0	0	14480	1363	47	2		2	SLAMF1	1	160593822	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	332500	160593822	88656799	95	99308											
RGS5	8490	broad.mit.edu	37	chr1	163172524	163172524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaccactgggcagcctcCcttgagtaaagattctccat	8	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163172524	A	A	163172524	1	1	102	0	1	0	0	0	0	0	0	0	13417	638	22	2		2	RGS5	1	163172524	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2578702	163172524	86078097	96	99309											
LRRC52	440699	broad.mit.edu	37	chr1	165532835	165532835	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgatacatgtgcatcacgcAcctggaccacaaagactaca	7	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165532835	T	T	165532835	3	4	102	1	0	0	0	0	1	0	0	0	9097	159	6	5	722	5	LRRC52	1	165532835	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	2360311	165532835	83717786	97	99310											
ATP1B1	481	broad.mit.edu	37	chr1	169080727	169080727	+	RNA	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatatcaggaccgagtgGccccgccaggtaaaatccac	9	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169080727	T	T	169080727	1	4	102	0	1	0	0	0	0	0	0	0	1136	1203	42	3		3	ATP1B1	1	169080727	RNA	SNP	G	TCGA-38-4631-01A-01D-1753-08	3547892	169080727	80169894	98	99311											
FMO4	2329	broad.mit.edu	37	chr1	171306562	171306562	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaggaacagctcattaaAaggtatgaaatgtagcttgc	10	5	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171306562	G	G	171306562	2	3	102	1	0	0	0	0	0	0	0	1	6015	11	1	5		5	FMO4	1	171306562	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	2225835	171306562	77944059	99	99312											
FASLG	356	broad.mit.edu	37	chr1	172628724	172628724	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agactgctgtgccctggaggCaccaggcataaggggatgga	16	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172628724	G	G	172628724	1	3	102	0	1	0	0	0	0	0	0	0	5739	725	25	4		4	FASLG	1	172628724	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1322162	172628724	76621897	100	99313											
SLC9A11	284525	broad.mit.edu	37	chr1	173505131	173505131	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttataataaaaagcaaGtgctatactttgggttaata	8	3	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173505131	A	A	173505131	1	1	102	0	1	0	0	0	0	0	0	0	14825	1044	36	4		4	SLC9A11	1	173505131	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	876407	173505131	75745490	101	99314											
GPR52	9293	broad.mit.edu	37	chr1	174417343	174417343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcctgcccacttggatttGgccactacagtgtggtggat	11	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174417343	T	T	174417343	3	4	102	1	0	0	0	0	1	0	0	0	6763	1348	47	2	96	2	GPR52	1	174417343	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	912212	174417343	74833278	102	99315											
RFWD2	64326	broad.mit.edu	37	chr1	175956124	175956124	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagcactaacaaattcattTgtatcatcttcttttcggtc	4	10	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175956124	A	A	175956124	2	1	102	1	0	0	0	0	0	0	0	1	13368	1799	63	5		5	RFWD2	1	175956124	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	1538781	175956124	73294497	103	99316											
ASTN1	460	broad.mit.edu	37	chr1	176983744	176983744	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctcgtaaatggagaaaaaGatgatatagacgtcactgga	12	5	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176983744	C	C	176983744	1	2	102	0	1	0	0	0	0	0	0	0	1068	957	33	4		4	ASTN1	1	176983744	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1027620	176983744	72266877	104	99317											
FAM5B	57795	broad.mit.edu	37	chr1	177250308	177250308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaatctactatgagcccCtggagatgactgatccctct	8	12	2	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177250308	A	A	177250308	3	1	102	1	0	0	0	0	1	0	0	0	5644	680	24	2	2022	2	FAM5B	1	177250308	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	266564	177250308	72000313	105	99318											
C1orf49	84066	broad.mit.edu	37	chr1	178482181	178482181	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctctggaccaccatgtgGgtcctggcattgtgacctca	11	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178482181	T	T	178482181	1	4	102	0	1	0	0	0	0	0	0	0	2063	1247	43	2		2	C1orf49	1	178482181	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	1231873	178482181	70768440	106	99319											
SOAT1	6646	broad.mit.edu	37	chr1	179319664	179319664	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtaggagaactagatagTagtagtaacattttaaggta	10	2	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179319664	A	A	179319664	1	1	102	0	1	0	0	0	0	0	0	0	15024	1653	57	5		5	SOAT1	1	179319664	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	837483	179319664	69930957	107	99320											
C1orf125	126859	broad.mit.edu	37	chr1	179504205	179504205	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatatttggtgctaatctaCtagtttatacttctcatagg	6	6	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179504205	T	T	179504205	1	4	102	0	1	0	0	0	0	0	0	0	2013	580	20	4		4	C1orf125	1	179504205	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	184541	179504205	69746416	108	99321											
KIAA1614	57710	broad.mit.edu	37	chr1	180905361	180905361	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttacagaaagccacgagtcCctggaaattgtctctccttc	8	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180905361	T	T	180905361	2	4	102	1	0	0	0	0	0	0	0	1	8318	610	22	4		4	KIAA1614	1	180905361	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1401156	180905361	68345260	109	99322											
CACNA1E	777	broad.mit.edu	37	chr1	181765709	181765709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctctgagggcccaaccCcaggctgtgatgtgatactt	11	12	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181765709	A	A	181765709	1	1	102	0	1	0	0	0	0	0	0	0	2568	638	22	2		2	CACNA1E	1	181765709	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	860348	181765709	67484912	110	99323											
EDEM3	80267	broad.mit.edu	37	chr1	184688541	184688541	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcctaattaacatcatcatCttacattcatattaagaaga	3	9	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184688541	A	A	184688541	1	1	102	0	1	0	0	0	0	0	0	0	4953	928	32	3		3	EDEM3	1	184688541	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2922832	184688541	64562080	111	99324											
RNF2	6045	broad.mit.edu	37	chr1	185060780	185060780	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtgaattaatgtgcccaAtttgtttggatatgttgaag	10	4	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185060780	T	T	185060780	3	4	102	1	0	0	0	0	1	0	0	0	13583	101	4	5	163	5	RNF2	1	185060780	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	372239	185060780	64189841	112	99325											
HMCN1	83872	broad.mit.edu	37	chr1	186113529	186113529	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaacatctacctatcttatCtaggtagtatgtcaacaaga	5	8	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186113529	A	A	186113529	1	1	102	0	1	0	0	0	0	0	0	0	7287	928	32	3		3	HMCN1	1	186113529	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1052749	186113529	63137092	113	99326											
TPR	7175	broad.mit.edu	37	chr1	186332406	186332406	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttactttattgcctatatttGaaatttaatttaggtgagtt	6	3	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186332406	A	A	186332406	1	1	102	0	1	0	0	0	0	0	0	0	16540	1305	45	4		4	TPR	1	186332406	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	218877	186332406	62918215	114	99327											
PLA2G4A	5321	broad.mit.edu	37	chr1	186862291	186862291	+	Frame_Shift_Del	DEL	G	-	-													aatcaggaaaatgttttggaGgtaagtgaaccatttggatg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	186862291	-	-	186862291	7	5	102	1	0	1	0	1	0	0	0	0	12096	1014	35	0	274	0	PLA2G4A	1	186862291	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	529885	186862291	62388330	115	99328											
FAM5C	339479	broad.mit.edu	37	chr1	190067568	190067568	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgatgcgacttctcaggtaGatgtgtactgtctcaaaaaa	9	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067568	T	T	190067568	2	4	102	1	0	0	0	0	0	0	0	1	5645	932	33	3		3	FAM5C	1	190067568	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3205277	190067568	59183053	116	99329											
CFH	3075	broad.mit.edu	37	chr1	196706738	196706738	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttcaggatatctgaagaAaatgaaacaacatgctacat	8	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196706738	C	C	196706738	3	2	102	1	0	0	0	0	1	0	0	0	3313	11	1	5	2814	5	CFH	1	196706738	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	6639170	196706738	52543883	117	99330											
CFHR1	3078	broad.mit.edu	37	chr1	196796100	196796100	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacatttcatgtgtagaacGgggctggtccacccctccca	9	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196796100	C	C	196796100	3	2	102	1	0	0	0	0	1	0	0	0	3314	1116	39	4	405	4	CFHR1	1	196796100	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	89362	196796100	52454521	118	99331											
CFHR4	10877	broad.mit.edu	37	chr1	196876504	196876504	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatggagataccacgtccttCccgcaaaaagtgtatctgcc	8	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196876504	T	T	196876504	1	4	102	0	1	0	0	0	0	0	0	0	3317	870	30	4		4	CFHR4	1	196876504	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	80404	196876504	52374117	119	99332											
CRB1	23418	broad.mit.edu	37	chr1	197325897	197325897	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagcagtcaacctcctttTaggcaaatgctctataattc	5	10	2	0	rs148281370	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197325897	C	C	197325897	1	2	102	0	1	0	0	0	0	0	0	0	3880	1769	61	5		5	CRB1	1	197325897	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	449393	197325897	51924724	120	99333											
LGR6	59352	broad.mit.edu	37	chr1	202272257	202272257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcagcctccacgagggCctgcgtggctgacttgagga	15	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202272257	A	A	202272257	1	1	102	0	1	0	0	0	0	0	0	0	8830	754	26	3		3	LGR6	1	202272257	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4946360	202272257	46978364	121	99334											
LGR6	59352	broad.mit.edu	37	chr1	202276590	202276590	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgggactatgggctggcCaatggaggcagaagggccac	17	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202276590	T	T	202276590	1	4	102	0	1	0	0	0	0	0	0	0	8830	609	21	4		4	LGR6	1	202276590	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4333	202276590	46974031	122	99335											
PLEKHA6	22874	broad.mit.edu	37	chr1	204198174	204198174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgccaggctcctctgccCgcagggctgcctccaggttg	13	18	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204198174	A	A	204198174	3	1	102	1	0	0	0	0	1	0	0	0	12155	652	23	1	520	1	PLEKHA6	1	204198174	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1921584	204198174	45052447	123	99336											
CNTN2	6900	broad.mit.edu	37	chr1	205031162	205031162	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcttcccccgacacatcaCaactgtcctctgctcacttg	7	17	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205031162	T	T	205031162	1	4	102	0	1	0	0	0	0	0	0	0	3673	493	17	4		4	CNTN2	1	205031162	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	832988	205031162	44219459	124	99337											
PM20D1	148811	broad.mit.edu	37	chr1	205809437	205809437	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtggcctgggccactggGgggatgacattgaactagag	16	8	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205809437	A	A	205809437	2	1	102	1	0	0	0	0	0	0	0	1	12223	1219	43	4		4	PM20D1	1	205809437	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	778275	205809437	43441184	125	99338											
IKBKE	9641	broad.mit.edu	37	chr1	206653244	206653244	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccccaagttcgtccccaaAgtggacctgcaggcggatta	11	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206653244	G	G	206653244	2	3	102	1	0	0	0	0	0	0	0	1	7682	69	3	5		5	IKBKE	1	206653244	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	843807	206653244	42597377	126	99339											
LGTN	1939	broad.mit.edu	37	chr1	206765218	206765218	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctcagcggagcatgacCttgctccccggctggccctc	10	18	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206765218	T	T	206765218	1	4	102	0	1	0	0	0	0	0	0	0	8832	696	24	4		4	LGTN	1	206765218	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	111974	206765218	42485403	127	99340											
C4BPA	722	broad.mit.edu	37	chr1	207300004	207300004	+	Intron	DEL	C	-	-													attagcagtggcagtaatatCcttattaccatctatctttt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	207300004	-	-	207300004	6	5	102	0	1	1	0	1	0	0	0	0	2272	870	30	0		0	C4BPA	1	207300004	Intron	DEL	C	TCGA-38-4631-01A-01D-1753-08	534786	207300004	41950617	128	99341											
IRF6	3664	broad.mit.edu	37	chr1	209974728	209974728	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggccaccagccagggctTtagccggactctgcgggggt	16	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209974728	A	A	209974728	4	1	102	1	0	0	0	0	0	1	0	0	7904	1850	64	5	1400	5	IRF6	1	209974728	Nonsense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2674724	209974728	39275893	129	99342											
KCNK2	3776	broad.mit.edu	37	chr1	215256727	215256727	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattttgaatgctgcatgccTcatgcttcccagcgcctcgc	8	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215256727	A	A	215256727	1	1	102	0	1	0	0	0	0	0	0	0	8136	1566	54	5		5	KCNK2	1	215256727	5'UTR	SNP	T	TCGA-38-4631-01A-01D-1753-08	5281999	215256727	33993894	130	99343											
USH2A	7399	broad.mit.edu	37	chr1	216062061	216062061	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgggtagggggttgccAagatataatcacagatgttg	17	4	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216062061	T	T	216062061	3	4	102	1	0	0	0	0	1	0	0	0	17162	130	5	5	7806	5	USH2A	1	216062061	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	805334	216062061	33188560	131	99344											
USH2A	7399	broad.mit.edu	37	chr1	216219923	216219923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggctactggtggctgaaCctcttgtggggctgtggaag	16	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216219923	A	A	216219923	3	1	102	1	0	0	0	0	1	0	0	0	17162	507	18	3	9597	3	USH2A	1	216219923	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	157862	216219923	33030698	132	99345											
USH2A	7399	broad.mit.edu	37	chr1	216219960	216219960	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagaaaagatttatagagtCtaattttagtttacttttct	6	3	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216219960	A	A	216219960	1	1	102	0	1	0	0	0	0	0	0	0	17162	928	32	3		3	USH2A	1	216219960	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	37	216219960	33030661	133	99346											
USH2A	7399	broad.mit.edu	37	chr1	216462805	216462805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaattcattaaaatcagctGcataattcaaaattaaagac	3	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216462805	T	T	216462805	1	4	102	0	1	0	0	0	0	0	0	0	17162	1334	46	3		3	USH2A	1	216462805	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	242845	216462805	32787816	134	99347											
TGFB2	7042	broad.mit.edu	37	chr1	218609196	218609196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataactgttgccagctgatGctgctttggtggtcatcact	10	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218609196	T	T	218609196	1	4	102	0	1	0	0	0	0	0	0	0	15941	1334	46	3		3	TGFB2	1	218609196	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2146391	218609196	30641425	135	99348											
BPNT1	10380	broad.mit.edu	37	chr1	220232157	220232157	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggattacaggcatgagcCaccgcgcccggccaaatgaa	12	13	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220232157	A	A	220232157	1	1	102	0	1	0	0	0	0	0	0	0	1503	609	21	2		2	BPNT1	1	220232157	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	1622961	220232157	29018464	136	99349											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220384375	220384375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaaatcatatgcttacCcactgaacttaccaattact	2	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220384375	A	A	220384375	1	1	102	0	1	0	0	0	0	0	0	0	13044	638	22	2		2	RAB3GAP2	1	220384375	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	152218	220384375	28866246	137	99350											
WDR26	80232	broad.mit.edu	37	chr1	224619521	224619521	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaacagacctgaccaaTtttagggttttaatccttca	6	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224619521	A	A	224619521	1	1	102	0	1	0	0	0	0	0	0	0	17410	1508	52	5		5	WDR26	1	224619521	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	4235146	224619521	24631100	138	99351											
ACBD3	64746	broad.mit.edu	37	chr1	226376847	226376847	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagcaattatattaccagGggttcaggacagcctagttt	10	7	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226376847	T	T	226376847	1	4	102	0	1	0	0	0	0	0	0	0	123	1247	43	2		2	ACBD3	1	226376847	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	1757326	226376847	22873774	139	99352											
ITPKB	3707	broad.mit.edu	37	chr1	226923458	226923458	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtctgtaatgatgacagCaggtatgttgctggggctgc	14	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226923458	G	G	226923458	3	3	102	1	0	0	0	0	1	0	0	0	7988	710	25	4	1166	4	ITPKB	1	226923458	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	546611	226923458	22327163	140	99353											
PSEN2	5664	broad.mit.edu	37	chr1	227077910	227077910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacaggggcctgcttcctGgccgtggctttcagagttga	16	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227077910	T	T	227077910	1	4	102	0	1	0	0	0	0	0	0	0	12757	1363	47	2		2	PSEN2	1	227077910	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	154452	227077910	22172711	141	99354											
PRSS38	339501	broad.mit.edu	37	chr1	228003480	228003480	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgggccttctgctgctGctcctggtggtggcccctcc	13	17	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228003480	T	T	228003480	2	4	102	1	0	0	0	0	0	0	0	1	12733	1306	46	3		3	PRSS38	1	228003480	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	925570	228003480	21247141	142	99355											
TRIM17	51127	broad.mit.edu	37	chr1	228596162	228596162	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggtccccttggacagctGcaccacccagaagccgtttt	9	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228596162	C	C	228596162	3	2	102	1	0	0	0	0	1	0	0	0	16617	1328	46	4	263	4	TRIM17	1	228596162	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	592682	228596162	20654459	143	99356											
GNPAT	8443	broad.mit.edu	37	chr1	231406910	231406910	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaatacttgttcatctGcttcgaattttggaattggg	8	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231406910	C	C	231406910	1	2	102	0	1	0	0	0	0	0	0	0	6605	1334	46	4		4	GNPAT	1	231406910	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2810748	231406910	17843711	144	99357											
KIAA1383	54627	broad.mit.edu	37	chr1	232943500	232943500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcccacctttttcagccGggtcacctgtacactcatac	6	15	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232943500	T	T	232943500	3	4	102	1	0	0	0	0	1	0	0	0	8298	1116	39	1	2733	1	KIAA1383	1	232943500	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1536590	232943500	16307121	145	99358											
PCNXL2	80003	broad.mit.edu	37	chr1	233394783	233394783	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaattctcactcccccaCggctggaaagaaacgtctgt	8	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233394783	A	A	233394783	2	1	102	1	0	0	0	0	0	0	0	1	11686	523	19	3		3	PCNXL2	1	233394783	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	451283	233394783	15855838	146	99359											
RYR2	6262	broad.mit.edu	37	chr1	237881823	237881823	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattcatttacaaggcaaggTaagccaaattttattcttaa	5	6	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237881823	A	A	237881823	5	1	102	1	0	0	0	0	0	0	1	0	13880	1652	57	5	10846	5	RYR2	1	237881823	Splice_Site	SNP	T	TCGA-38-4631-01A-01D-1753-08	4487040	237881823	11368798	147	99360											
RYR2	6262	broad.mit.edu	37	chr1	237936818	237936818	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatatcatctctatttcccAggaatcaattagtgactttt	4	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237936818	T	T	237936818	5	4	102	1	0	0	0	0	0	0	1	0	13880	202	7	5	11991	5	RYR2	1	237936818	Splice_Site	SNP	A	TCGA-38-4631-01A-01D-1753-08	54995	237936818	11313803	148	99361											
ZP4	57829	broad.mit.edu	37	chr1	238045984	238045984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagggatagaaaggaggaaGttgctttgattagtaattta	13	1	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238045984	A	A	238045984	1	1	102	0	1	0	0	0	0	0	0	0	18347	1044	36	4		4	ZP4	1	238045984	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	109166	238045984	11204637	149	99362											
FMN2	56776	broad.mit.edu	37	chr1	240306875	240306875	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaccttcagcacattcccaGagcctgcctatgcacacaca	6	17	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240306875	A	A	240306875	1	1	102	0	1	0	0	0	0	0	0	0	6008	957	33	4		4	FMN2	1	240306875	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2260891	240306875	8943746	150	99363											
RGS7	6000	broad.mit.edu	37	chr1	240969437	240969437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaggctcaccgtacaccCacctgagcatcttcaaatgt	8	13	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240969437	A	A	240969437	1	1	102	0	1	0	0	0	0	0	0	0	13419	609	21	2		2	RGS7	1	240969437	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	662562	240969437	8281184	151	99364											
KIF26B	55083	broad.mit.edu	37	chr1	245582977	245582977	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccgcctgcagtgtcccaGcctcgcagggctcctgcgtg	12	17	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245582977	A	A	245582977	3	1	102	1	0	0	0	0	1	0	0	0	8365	971	34	4	1110	4	KIF26B	1	245582977	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4613540	245582977	3667644	152	99365											
KIF26B	55083	broad.mit.edu	37	chr1	245848767	245848767	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggccgcatgcgcaggcccAcccagctgagacccttccac	10	18	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245848767	T	T	245848767	3	4	102	1	0	0	0	0	1	0	0	0	8365	159	6	5	2528	5	KIF26B	1	245848767	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	265790	245848767	3401854	153	99366											
ZNF695	57116	broad.mit.edu	37	chr1	247150365	247150365	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtttctctctggtatgaatTgtcttatgtttagaaaggtg	11	4	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247150365	A	A	247150365	2	1	102	1	0	0	0	0	0	0	0	1	18225	1799	63	5		5	ZNF695	1	247150365	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	1301598	247150365	2100256	154	99367											
NLRP3	114548	broad.mit.edu	37	chr1	247588321	247588321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcatccacatgactttcCaggagttctttgccgccatg	8	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588321	A	A	247588321	3	1	102	1	0	0	0	0	1	0	0	0	10573	595	21	2	1586	2	NLRP3	1	247588321	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	437956	247588321	1662300	155	99368											
NLRP3	114548	broad.mit.edu	37	chr1	247597298	247597298	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagatgtgttctgatgctttCtctattccggagcttcctga	9	10	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247597298	A	A	247597298	1	1	102	0	1	0	0	0	0	0	0	0	10573	928	32	3		3	NLRP3	1	247597298	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	8977	247597298	1653323	156	99369											
OR2C3	81472	broad.mit.edu	37	chr1	247695185	247695185	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggatgagccccagaggcAggacaacaaagacaaagctg	12	11	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695185	T	T	247695185	3	4	102	1	0	0	0	0	1	0	0	0	11087	188	7	5	337	5	OR2C3	1	247695185	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	97887	247695185	1555436	157	99370											
C1orf150	148823	broad.mit.edu	37	chr1	247737285	247737285	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttcactcatgatttggctCtctgcttgtctattattggt	8	8	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247737285	A	A	247737285	1	1	102	0	1	0	0	0	0	0	0	0	2024	928	32	3		3	C1orf150	1	247737285	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	42100	247737285	1513336	158	99371											
OR14A16	284532	broad.mit.edu	37	chr1	247978138	247978138	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccctttatcaacatcccCagagccacctttatggcctt	4	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247978138	T	T	247978138	2	4	102	1	0	0	0	0	0	0	0	1	11039	581	21	4		4	OR14A16	1	247978138	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	240853	247978138	1272483	159	99372											
OR2L13	284521	broad.mit.edu	37	chr1	248113156	248113156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccattcagcagtgtataGtaattaaaatattatgtcct	5	7	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248113156	T	T	248113156	1	4	102	0	1	0	0	0	0	0	0	0	11100	1044	36	3		3	OR2L13	1	248113156	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	135018	248113156	1137465	160	99373											
OR2M5	127059	broad.mit.edu	37	chr1	248308449	248308449	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggtaaaaaacatattcatCatggcatgggagaatcagac	9	6	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308449	A	A	248308449	1	1	102	0	1	0	0	0	0	0	0	0	11107	841	29	3		3	OR2M5	1	248308449	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	195293	248308449	942172	161	99374											
OR2M3	127062	broad.mit.edu	37	chr1	248366414	248366414	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccgacttcatcctcctGggaatcttcaatcacagccc	5	16	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366414	T	T	248366414	2	4	102	1	0	0	0	0	0	0	0	1	11105	1335	47	2		2	OR2M3	1	248366414	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	57965	248366414	884207	162	99375											
OR2T33	391195	broad.mit.edu	37	chr1	248436676	248436676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcagctgcacccaggagCcaacacgacatggtcatcct	9	16	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436676	A	A	248436676	3	1	102	1	0	0	0	0	1	0	0	0	11118	740	26	3	524	3	OR2T33	1	248436676	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	70262	248436676	813945	163	99376											
OR2T33	391195	broad.mit.edu	37	chr1	248436752	248436752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgggtggcagacagccGcatagcggtcataggccatg	17	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436752	T	T	248436752	3	4	102	1	0	0	0	0	1	0	0	0	11118	1087	38	3	600	3	OR2T33	1	248436752	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	76	248436752	813869	164	99377											
OR2T33	391195	broad.mit.edu	37	chr1	248437127	248437127	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctccataatttcccctGgtgtgatggtgcaaatggaa	9	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248437127	T	T	248437127	1	4	102	0	1	0	0	0	0	0	0	0	11118	1363	47	2		2	OR2T33	1	248437127	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	375	248437127	813494	165	99378											
OR2T6	254879	broad.mit.edu	37	chr1	248551620	248551621	+	Frame_Shift_Ins	INS	-	T	T													ctgaagggaggaagaaggccINStttgccacctgctcttcaca							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248551621	T	T	248551620	7	5	102	1	0	1	1	0	0	0	0	0	11123	668	24	0	713	0	OR2T6	1	248551620	Frame_Shift_Ins	INS	-	TCGA-38-4631-01A-01D-1753-08	114493	248551620	699001	166	99379											
OR14I1	401994	broad.mit.edu	37	chr1	248845177	248845177	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcttagccaggtggtgacTgccatctgatagcaccctcc	10	14	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248845177	A	A	248845177	2	1	102	1	0	0	0	0	0	0	0	1	11041	1567	55	5		5	OR14I1	1	248845177	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	293557	248845177	405444	167	99380											
ZNF692	55657	broad.mit.edu	37	chr1	249144510	249144510	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagatgctgggacagggctCtaggggaccactgggtgact	17	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249144510	A	A	249144510	4	1	102	1	0	0	0	0	0	1	0	0	18224	922	32	3	104	3	ZNF692	1	249144510	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	299333	249144510	106111	168	99381											
FAM150B	285016	broad.mit.edu	37	chr2	286093	286093	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctgcactgctcttgcAttttataaaaatccaatgct	6	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	286093	G	G	286093	1	3	102	0	1	0	0	0	0	0	0	0	5503	232	8	5		5	FAM150B	2	286093	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08		286093	242913280	169	99382											
TPO	7173	broad.mit.edu	37	chr2	1491779	1491779	+	Intron	DEL	C	-	-													gccaggtctgccagttccttCccttgcacacctcatgcagc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1491779	-	-	1491779	6	5	102	0	1	1	0	1	0	0	0	0	16534	870	30	0		0	TPO	2	1491779	Intron	DEL	C	TCGA-38-4631-01A-01D-1753-08	1205686	1491779	241707594	170	99383											
ALLC	55821	broad.mit.edu	37	chr2	3730688	3730688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtgacatggacttatcaCcagttccatggcttctttat	7	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3730688	A	A	3730688	1	1	102	0	1	0	0	0	0	0	0	0	534	522	18	3		3	ALLC	2	3730688	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2238909	3730688	239468685	171	99384											
ITGB1BP1	9270	broad.mit.edu	37	chr2	9558928	9558928	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttttttttttttttaagaGacagagtcttgctcttaccc	5	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9558928	A	A	9558928	1	1	102	0	1	0	0	0	0	0	0	0	7961	957	33	4		4	ITGB1BP1	2	9558928	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5828240	9558928	233640445	172	99385											
NBAS	51594	broad.mit.edu	37	chr2	15628947	15628947	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgtactatagtaaaatatCaataaaataaaattagtatt	4	2	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15628947	A	A	15628947	1	1	102	0	1	0	0	0	0	0	0	0	10280	841	29	3		3	NBAS	2	15628947	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	6070019	15628947	227570426	173	99386											
MYCN	4613	broad.mit.edu	37	chr2	16085778	16085778	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggctcagtccagcgagctGatcctcaaacgatgccttcc	10	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16085778	T	T	16085778	2	4	102	1	0	0	0	0	0	0	0	1	10115	1277	45	3		3	MYCN	2	16085778	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	456831	16085778	227113595	174	99387											
VSNL1	7447	broad.mit.edu	37	chr2	17830709	17830709	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagacgcctccaagtttgcCcagcatgccttccgaacctt	9	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17830709	A	A	17830709	2	1	102	1	0	0	0	0	0	0	0	1	17354	610	22	2		2	VSNL1	2	17830709	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1744931	17830709	225368664	175	99388											
APOB	338	broad.mit.edu	37	chr2	21235326	21235326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgctgtttctttttggagtCcaaatgaactgaagcagaca	9	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21235326	A	A	21235326	3	1	102	1	0	0	0	0	1	0	0	0	787	855	30	3	9293	3	APOB	2	21235326	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3404617	21235326	221964047	176	99389											
ATAD2B	54454	broad.mit.edu	37	chr2	24095155	24095155	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagccacagcttccacggCtttacgcacagtctcttcat	8	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24095155	A	A	24095155	1	1	102	0	1	0	0	0	0	0	0	0	1076	812	28	3		3	ATAD2B	2	24095155	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2859829	24095155	219104218	177	99390											
DNAJC27	51277	broad.mit.edu	37	chr2	25190085	25190085	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacaatatacttactttgtGactccatagtcaattccaat	3	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25190085	T	T	25190085	2	4	102	1	0	0	0	0	0	0	0	1	4685	1277	45	3		3	DNAJC27	2	25190085	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1094930	25190085	218009288	178	99391											
DTNB	1838	broad.mit.edu	37	chr2	25656748	25656748	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacgtgataatcctggactCtggaagtgggctcagcctct	12	11	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25656748	A	A	25656748	1	1	102	0	1	0	0	0	0	0	0	0	4829	928	32	3		3	DTNB	2	25656748	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	466663	25656748	217542625	179	99392											
EHD3	30845	broad.mit.edu	37	chr2	31484546	31484546	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcgggagcaccagatctcAcctggggacttccccaatct	11	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31484546	T	T	31484546	2	4	102	1	0	0	0	0	0	0	0	1	5019	146	6	5		5	EHD3	2	31484546	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	5827798	31484546	211714827	180	99393											
XDH	7498	broad.mit.edu	37	chr2	31567508	31567508	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaccagtgaggttaggacGacatcacactatgagctggg	14	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31567508	T	T	31567508	1	4	102	0	1	0	0	0	0	0	0	0	17553	1073	37	3		3	XDH	2	31567508	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	82962	31567508	211631865	181	99394											
BIRC6	57448	broad.mit.edu	37	chr2	32613998	32613998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactcggagtggggccaggcCgttctgtagacaggtatgaa	15	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32613998	T	T	32613998	3	4	102	1	0	0	0	0	1	0	0	0	1444	652	23	4	840	4	BIRC6	2	32613998	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1046490	32613998	210585375	182	99395											
LTBP1	4052	broad.mit.edu	37	chr2	33484662	33484662	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctggttttagtggcaacTgcaccccctgaaaaggtaat	9	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33484662	A	A	33484662	2	1	102	1	0	0	0	0	0	0	0	1	9160	1567	55	5		5	LTBP1	2	33484662	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	870664	33484662	209714711	183	99396											
CRIM1	51232	broad.mit.edu	37	chr2	36669769	36669769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctttcagttttcggcgtgGactgcaggactgtggaatgc	13	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36669769	T	T	36669769	3	4	102	1	0	0	0	0	1	0	0	0	3905	1174	41	3	774	3	CRIM1	2	36669769	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3185107	36669769	206529604	184	99397											
SLC8A1	6546	broad.mit.edu	37	chr2	40366496	40366496	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtgtcaagaaggcaaaTgaacttctgctactggggga	13	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40366496	C	C	40366496	1	2	102	0	1	0	0	0	0	0	0	0	14820	1479	51	5		5	SLC8A1	2	40366496	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3696727	40366496	202832877	185	99398											
EML4	27436	broad.mit.edu	37	chr2	42509828	42509828	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgtgagcactctgcccGtccaggacatgagttttcta	10	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42509828	C	C	42509828	1	2	102	0	1	0	0	0	0	0	0	0	5141	1160	40	4		4	EML4	2	42509828	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2143332	42509828	200689545	186	99399											
EML4	27436	broad.mit.edu	37	chr2	42510128	42510128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggttggtatcatttaaCattggttcatttttgttctt	7	4	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42510128	A	A	42510128	1	1	102	0	1	0	0	0	0	0	0	0	5141	493	17	3		3	EML4	2	42510128	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	300	42510128	200689245	187	99400											
THADA	63892	broad.mit.edu	37	chr2	43797577	43797577	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtttggttaactcattctCtggttcacgtttggatttac	8	8	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43797577	A	A	43797577	4	1	102	1	0	0	0	0	0	1	0	0	15963	922	32	3	3824	3	THADA	2	43797577	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1287449	43797577	199401796	188	99401											
PREPL	9581	broad.mit.edu	37	chr2	44586880	44586880	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaagtccctggtttatgctCcttttggggctgccagcaca	10	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44586880	A	A	44586880	1	1	102	0	1	0	0	0	0	0	0	0	12581	870	30	3		3	PREPL	2	44586880	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	789303	44586880	198612493	189	99402											
EPAS1	2034	broad.mit.edu	37	chr2	46574200	46574200	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacacacaagctcctctcctCaggtaaggccagcaggctcc	8	16	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46574200	T	T	46574200	3	4	102	1	0	0	0	0	1	0	0	0	5192	838	29	4	221	4	EPAS1	2	46574200	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1987320	46574200	196625173	190	99403											
MSH2	4436	broad.mit.edu	37	chr2	47710185	47710185	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttccatagtgttaactGtcagtgcccatgggctatca	8	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47710185	T	T	47710185	1	4	102	0	1	0	0	0	0	0	0	0	9964	1392	48	3		3	MSH2	2	47710185	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	1135985	47710185	195489188	191	99404											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48809666	48809666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgcctaccaggcagtgGtatggaagatagatcggctt	14	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48809666	T	T	48809666	3	4	102	1	0	0	0	0	1	0	0	0	15435	1261	44	3	1896	3	STON1-GTF2A1L	2	48809666	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1099481	48809666	194389707	192	99405											
LHCGR	3973	broad.mit.edu	37	chr2	48915276	48915276	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccattaattctgggtttcGaactgcaaaataaattttaa	6	6	1	0	rs121912524		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48915276	A	A	48915276	4	1	102	1	0	0	0	0	0	1	0	0	8834	1066	37	4	443	4	LHCGR	2	48915276	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	105610	48915276	194284097	193	99406											
FSHR	2492	broad.mit.edu	37	chr2	49189750	49189750	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaccaatttaccttaaaGgtatgccaggaatattaaat	6	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49189750	A	A	49189750	1	1	102	0	1	0	0	0	0	0	0	0	6133	1015	35	4		4	FSHR	2	49189750	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	274474	49189750	194009623	194	99407											
NRXN1	9378	broad.mit.edu	37	chr2	50722988	50722988	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaagcaaaggattttccatGtgaagggagaccgtgtggtg	14	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50722988	A	A	50722988	1	1	102	0	1	0	0	0	0	0	0	0	10760	1392	48	4		4	NRXN1	2	50722988	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1533238	50722988	192476385	195	99408											
NRXN1	9378	broad.mit.edu	37	chr2	50733715	50733715	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgtgtgccactcgttatcAttgaggttatagccagcaaa	9	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50733715	T	T	50733715	3	4	102	1	0	0	0	0	1	0	0	0	10760	214	8	5	2415	5	NRXN1	2	50733715	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	10727	50733715	192465658	196	99409											
NRXN1	9378	broad.mit.edu	37	chr2	51254933	51254934	+	Missense_Mutation	DNP	GG	AT	AT													gcgccgcggcgcgcagttccGggggcagccccccgacgaaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	51254934	AT	AT	51254933	3	1	102	1	0	0	0	0	1	0	0	0	10760	1116	39	4	4519	4	NRXN1	2	51254933	Missense_Mutation	DNP	GG	TCGA-38-4631-01A-01D-1753-08	521218	51254933	191944440	197	99410											
C2orf73	129852	broad.mit.edu	37	chr2	54558174	54558175	+	Intron	INS	-	A	A													ggtgtcttatttccctttccINSaaaaactattttcctccttc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54558175	A	A	54558174	6	5	102	0	1	1	1	0	0	0	0	0	2214	609	21	0		0	C2orf73	2	54558174	Intron	INS	-	TCGA-38-4631-01A-01D-1753-08	3303241	54558174	188641199	198	99411											
SPTBN1	6711	broad.mit.edu	37	chr2	54872432	54872432	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaagccaagcccaggccCtgagtcaggaagggaagagc	13	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54872432	T	T	54872432	2	4	102	1	0	0	0	0	0	0	0	1	15237	680	24	4		4	SPTBN1	2	54872432	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	314258	54872432	188326941	199	99412											
C2orf86	51057	broad.mit.edu	37	chr2	63631145	63631145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattatgtcactatcctaaaCattttaatttacttactcat	1	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63631145	A	A	63631145	1	1	102	0	1	0	0	0	0	0	0	0	2223	493	17	3		3	C2orf86	2	63631145	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	8758713	63631145	179568228	200	99413											
C2orf86	51057	broad.mit.edu	37	chr2	63631844	63631844	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactttggtttttcttcaaCttcacacctaggactgcata	5	10	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63631844	T	T	63631844	1	4	102	0	1	0	0	0	0	0	0	0	2223	580	20	4		4	C2orf86	2	63631844	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	699	63631844	179567529	201	99414											
APLF	200558	broad.mit.edu	37	chr2	68740586	68740586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtctacagttgcatatGggtattttaatggtagtatt	9	5	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68740586	T	T	68740586	1	4	102	0	1	0	0	0	0	0	0	0	778	1363	47	2		2	APLF	2	68740586	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5108742	68740586	174458787	202	99415											
AAK1	22848	broad.mit.edu	37	chr2	69736519	69736519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgagggtggagtgagagatCcaactttctgcccctggacg	14	9	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69736519	A	A	69736519	3	1	102	1	0	0	0	0	1	0	0	0	16	855	30	3	1071	3	AAK1	2	69736519	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	995933	69736519	173462854	203	99416											
GMCL1	64395	broad.mit.edu	37	chr2	70096905	70096905	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgacctacttgtaacttacAccaatcgatacatcattttc	3	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70096905	G	G	70096905	3	3	102	1	0	0	0	0	1	0	0	0	6549	159	6	5	1319	5	GMCL1	2	70096905	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	360386	70096905	173102468	204	99417											
CD207	50489	broad.mit.edu	37	chr2	71058741	71058741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggaagaatcagaaaccCtgtctcatggggaacatcgc	11	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71058741	A	A	71058741	1	1	102	0	1	0	0	0	0	0	0	0	3013	696	24	2		2	CD207	2	71058741	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	961836	71058741	172140632	205	99418											
VAX2	25806	broad.mit.edu	37	chr2	71148364	71148364	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgctgccagtatgtggtGggccgcgagcgcactgagct	16	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71148364	T	T	71148364	2	4	102	1	0	0	0	0	0	0	0	1	17262	1335	47	2		2	VAX2	2	71148364	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	89623	71148364	172051009	206	99419											
ALMS1	7840	broad.mit.edu	37	chr2	73678725	73678725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgaagaagctctgaaaGttccacctgttcctggacca	8	12	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73678725	T	T	73678725	3	4	102	1	0	0	0	0	1	0	0	0	535	1029	36	3	5098	3	ALMS1	2	73678725	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2530361	73678725	169520648	207	99420											
LRRTM4	80059	broad.mit.edu	37	chr2	77745528	77745528	+	Frame_Shift_Del	DEL	C	-	-													atggtctcagagtttgtaggCttgtagtccacataatactc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77745528	-	-	77745528	7	5	102	1	0	1	0	1	0	0	0	0	9129	796	28	0	319	0	LRRTM4	2	77745528	Frame_Shift_Del	DEL	C	TCGA-38-4631-01A-01D-1753-08	4066803	77745528	165453845	208	99421											
LRRTM4	80059	broad.mit.edu	37	chr2	77748950	77748951	+	Intron	DNP	CC	AA	AA													gtagccccatacaaacttccCcgagaggacaggcaaaaaaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	77748951	AA	AA	77748950	1	1	102	0	1	0	0	0	0	0	0	0	9129	638	22	2		2	LRRTM4	2	77748950	Intron	DNP	CC	TCGA-38-4631-01A-01D-1753-08	3422	77748950	165450423	209	99422											
REG3A	5068	broad.mit.edu	37	chr2	79386433	79386433	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggattcatagggaacccagTgctagaggcaaagcaatctc	11	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79386433	G	G	79386433	1	3	102	0	1	0	0	0	0	0	0	0	13320	1711	59	5		5	REG3A	2	79386433	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	1637483	79386433	163812940	210	99423											
C2orf89	129293	broad.mit.edu	37	chr2	85049050	85049050	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccagtcgttacaggagGggtgtctctgtttggaaagc	14	8	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85049050	T	T	85049050	2	4	102	1	0	0	0	0	0	0	0	1	2225	1219	43	2		2	C2orf89	2	85049050	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	5662617	85049050	158150323	211	99424											
SFTPB	6439	broad.mit.edu	37	chr2	85894864	85894864	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgcactgcaatgcttGctccaggctttggcaccaga	11	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85894864	A	A	85894864	4	1	102	1	0	0	0	0	0	1	0	0	14304	1328	46	4	1048	4	SFTPB	2	85894864	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	845814	85894864	157304509	212	99425											
C2orf51	200523	broad.mit.edu	37	chr2	88825284	88825284	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctctttctagaagctcatCtttctgtaatgatagttttg	8	7	5	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88825284	T	T	88825284	1	4	102	0	1	0	0	0	0	0	0	0	2195	928	32	4		4	C2orf51	2	88825284	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2930420	88825284	154374089	213	99426											
CIAO1	9391	broad.mit.edu	37	chr2	96936996	96936996	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggatgtcaactgtgtGgcctggaaccccaaggagcc	12	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96936996	T	T	96936996	2	4	102	1	0	0	0	0	0	0	0	1	3449	1335	47	2		2	CIAO1	2	96936996	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	8111712	96936996	146262377	214	99427											
SNRNP200	23020	broad.mit.edu	37	chr2	96950178	96950178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcgctgcttccatcgcCgggaaagtatgtcccacttc	9	14	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96950178	A	A	96950178	3	1	102	1	0	0	0	0	1	0	0	0	14966	652	23	1	2160	1	SNRNP200	2	96950178	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	13182	96950178	146249195	215	99428											
VWA3B	200403	broad.mit.edu	37	chr2	98736075	98736075	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggctcaccagcaagagcCggcagatttttggtgtcatc	11	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98736075	T	T	98736075	3	4	102	1	0	0	0	0	1	0	0	0	17368	643	23	4	401	4	VWA3B	2	98736075	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1785897	98736075	144463298	216	99429											
VWA3B	200403	broad.mit.edu	37	chr2	98822875	98822875	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaatgcccagcaagtaCaaggcagggagaccaggctg	12	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98822875	G	G	98822875	1	3	102	0	1	0	0	0	0	0	0	0	17368	493	17	4		4	VWA3B	2	98822875	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	86800	98822875	144376498	217	99430											
VWA3B	200403	broad.mit.edu	37	chr2	98844898	98844898	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgctctgtgaaatttcttTtagtgaaaagaatcacgtag	8	5	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98844898	A	A	98844898	1	1	102	0	1	0	0	0	0	0	0	0	17368	1856	64	5		5	VWA3B	2	98844898	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	22023	98844898	144354475	218	99431											
INPP4A	3631	broad.mit.edu	37	chr2	99149825	99149825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggattcatttctttcccGtgttgattctgtagcttgca	8	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99149825	T	T	99149825	1	4	102	0	1	0	0	0	0	0	0	0	7822	1160	40	3		3	INPP4A	2	99149825	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	304927	99149825	144049548	219	99432											
MGAT4A	11320	broad.mit.edu	37	chr2	99242232	99242232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattctgaataactgaaagtCgaaaggctgaaatgggattg	11	4	1	3	rs146487281		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99242232	A	A	99242232	3	1	102	1	0	0	0	0	1	0	0	0	9638	884	31	3	159	3	MGAT4A	2	99242232	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	92407	99242232	143957141	220	99433											
MGAT4A	11320	broad.mit.edu	37	chr2	99342815	99342815	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcatttcaccatcacactGgtccatatgtttatgatgac	5	11	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99342815	A	A	99342815	1	1	102	0	1	0	0	0	0	0	0	0	9638	1363	47	4		4	MGAT4A	2	99342815	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	100583	99342815	143856558	221	99434											
CREG2	200407	broad.mit.edu	37	chr2	101967402	101967402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaggcctttctgggaaCtgctttgaaatattcctccc	7	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101967402	A	A	101967402	3	1	102	1	0	0	0	0	1	0	0	0	3897	565	20	3	20	3	CREG2	2	101967402	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2624587	101967402	141231971	222	99435											
SLC9A4	389015	broad.mit.edu	37	chr2	103090302	103090302	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtgttctgaagcatcttcTgatttgaatgaatctgcaaa	9	6	4	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103090302	A	A	103090302	2	1	102	1	0	0	0	0	0	0	0	1	14830	1567	55	5		5	SLC9A4	2	103090302	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	1122900	103090302	140109071	223	99436											
SULT1C4	27233	broad.mit.edu	37	chr2	109002889	109002889	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaatattttaaagcatttGaggagttttctttcctgtgt	7	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109002889	A	A	109002889	1	1	102	0	1	0	0	0	0	0	0	0	15497	1305	45	4		4	SULT1C4	2	109002889	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5912587	109002889	134196484	224	99437											
GCC2	9648	broad.mit.edu	37	chr2	109067569	109067569	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctaaatcaaggtgtacagGtattgggttgaaaatactca	10	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109067569	C	C	109067569	5	2	102	1	0	0	0	0	0	0	1	0	6348	1275	44	4	159	4	GCC2	2	109067569	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	64680	109067569	134131804	225	99438											
RANBP2	5903	broad.mit.edu	37	chr2	109380142	109380142	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacttcacgttttcctcaccAcaggttgtgacacagccccc	7	16	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109380142	G	G	109380142	2	3	102	1	0	0	0	0	0	0	0	1	13136	146	6	5		5	RANBP2	2	109380142	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	312573	109380142	133819231	226	99439											
CCDC138	165055	broad.mit.edu	37	chr2	109408185	109408185	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaacaggaaacagaagaAgagttaattgaaaatgatta	9	2	0	6			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109408185	G	G	109408185	2	3	102	1	0	0	0	0	0	0	0	1	2798	69	3	5		5	CCDC138	2	109408185	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	28043	109408185	133791188	227	99440											
CCDC138	165055	broad.mit.edu	37	chr2	109415040	109415040	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caagatttcaaattataaaaGaggtaactatatagcctttg	6	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109415040	T	T	109415040	4	4	102	1	0	0	0	0	0	1	0	0	2798	943	33	3	755	3	CCDC138	2	109415040	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	6855	109415040	133784333	228	99441											
NPHP1	4867	broad.mit.edu	37	chr2	110886808	110886808	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccaagagcatggggaaGgtggccagcatgggatggct	17	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110886808	T	T	110886808	2	4	102	1	0	0	0	0	0	0	0	1	10674	987	35	2		2	NPHP1	2	110886808	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1471768	110886808	132312565	229	99442											
PSD4	23550	broad.mit.edu	37	chr2	113949864	113949864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggtccagctcctccggGccccaccattcaaggcgctg	11	18	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113949864	T	T	113949864	1	4	102	0	1	0	0	0	0	0	0	0	12755	1218	42	3		3	PSD4	2	113949864	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3063056	113949864	129249509	230	99443											
CCDC93	54520	broad.mit.edu	37	chr2	118753904	118753904	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcggatatagtcacccatcTcttcttttgtttctatagct	6	10	4	0	rs113727191		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118753904	A	A	118753904	3	1	102	1	0	0	0	0	1	0	0	0	2900	1551	54	5	1577	5	CCDC93	2	118753904	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	4804040	118753904	124445469	231	99444											
INSIG2	51141	broad.mit.edu	37	chr2	118864650	118864650	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctctgtgggtattaaagacAtgtctgttattctagatata	8	6	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118864650	T	T	118864650	1	4	102	0	1	0	0	0	0	0	0	0	7836	232	8	5		5	INSIG2	2	118864650	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	110746	118864650	124334723	232	99445											
MARCO	8685	broad.mit.edu	37	chr2	119750073	119750073	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaatcactatttatattatCtttaatgtgtgctttaaagt	5	4	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119750073	G	G	119750073	1	3	102	0	1	0	0	0	0	0	0	0	9403	928	32	4		4	MARCO	2	119750073	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	885423	119750073	123449300	233	99446											
MARCO	8685	broad.mit.edu	37	chr2	119750107	119750107	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaagtcaattctgcacctGaaaattgtgtgtgttggggg	12	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119750107	C	C	119750107	1	2	102	0	1	0	0	0	0	0	0	0	9403	1305	45	4		4	MARCO	2	119750107	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	34	119750107	123449266	234	99447											
TFCP2L1	29842	broad.mit.edu	37	chr2	122004483	122004483	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaacgtgtcaatctggactcGaaagggcactcccttctcgc	9	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122004483	A	A	122004483	4	1	102	1	0	0	0	0	0	1	0	0	15919	1066	37	4	911	4	TFCP2L1	2	122004483	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2254376	122004483	121194890	235	99448											
CNTNAP5	129684	broad.mit.edu	37	chr2	125261947	125261947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcggcagctatttgctgCtgcccggcaccccccaaatt	9	17	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125261947	A	A	125261947	3	1	102	1	0	0	0	0	1	0	0	0	3682	796	28	3	1168	3	CNTNAP5	2	125261947	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3257464	125261947	117937426	236	99449											
CNTNAP5	129684	broad.mit.edu	37	chr2	125281974	125281974	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgatgaagcagcacccccGgctccagacagcacttgggt	12	13	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125281974	A	A	125281974	2	1	102	1	0	0	0	0	0	0	0	1	3682	1103	39	4		4	CNTNAP5	2	125281974	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	20027	125281974	117917399	237	99450											
CNTNAP5	129684	broad.mit.edu	37	chr2	125504773	125504773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttacttcaggcttgccCtaccctgactggtggaatat	10	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125504773	A	A	125504773	1	1	102	0	1	0	0	0	0	0	0	0	3682	696	24	2		2	CNTNAP5	2	125504773	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	222799	125504773	117694600	238	99451											
ERCC3	2071	broad.mit.edu	37	chr2	128046468	128046468	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggcacaaaaggggttttAaaatcttgttactgtgctca	11	6	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128046468	T	T	128046468	1	4	102	0	1	0	0	0	0	0	0	0	5256	377	13	5		5	ERCC3	2	128046468	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2541695	128046468	115152905	239	99452											
MAP3K2	10746	broad.mit.edu	37	chr2	128075837	128075837	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataacagaggtagacccttcCaaaggctccttggccaagca	9	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128075837	G	G	128075837	3	3	102	1	0	0	0	0	1	0	0	0	9342	603	21	4	777	4	MAP3K2	2	128075837	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	29369	128075837	115123536	240	99453											
PROC	5624	broad.mit.edu	37	chr2	128177603	128177604	+	Intron	DNP	CC	AA	AA													ctcttggtaaggccaccccaCccctaccccgggacccttgt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	128177604	AA	AA	128177603	1	1	102	0	1	0	0	0	0	0	0	0	12651	522	18	3		3	PROC	2	128177603	Intron	DNP	CC	TCGA-38-4631-01A-01D-1753-08	101766	128177603	115021770	241	99454											
MYO7B	4648	broad.mit.edu	37	chr2	128327353	128327353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcatgtccctgcacacCctttttgcagcggcgagtct	10	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128327353	A	A	128327353	1	1	102	0	1	0	0	0	0	0	0	0	10177	638	22	2		2	MYO7B	2	128327353	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	149750	128327353	114872020	242	99455											
MYO7B	4648	broad.mit.edu	37	chr2	128339425	128339425	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagtgctgggccaggccCtgctccacaggtgcgacgca	14	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128339425	A	A	128339425	1	1	102	0	1	0	0	0	0	0	0	0	10177	696	24	2		2	MYO7B	2	128339425	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	12072	128339425	114859948	243	99456											
MYO7B	4648	broad.mit.edu	37	chr2	128367543	128367543	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcagatccatgacacgctGggcagggagcacggtgccca	15	13	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128367543	T	T	128367543	2	4	102	1	0	0	0	0	0	0	0	1	10177	1335	47	2		2	MYO7B	2	128367543	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	28118	128367543	114831830	244	99457											
LCT	3938	broad.mit.edu	37	chr2	136569967	136569967	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactttcccctatgggcatgCcattcccggcaaggtatatt	8	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136569967	T	T	136569967	3	4	102	1	0	0	0	0	1	0	0	0	8765	739	26	4	3560	4	LCT	2	136569967	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	8202424	136569967	106629406	245	99458											
MCM6	4175	broad.mit.edu	37	chr2	136623838	136623838	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacacgggaattagtttctGcacgtgctcctgaaacagaa	10	9	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136623838	C	C	136623838	3	2	102	1	0	0	0	0	1	0	0	0	9484	1319	46	4	1722	4	MCM6	2	136623838	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	53871	136623838	106575535	246	99459											
THSD7B	80731	broad.mit.edu	37	chr2	138169367	138169367	+	Frame_Shift_Del	DEL	G	-	-													acagcaaagaatgtggagaaGgcctgcgctttcgagcagta							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138169367	-	-	138169367	7	5	102	1	0	1	0	1	0	0	0	0	16003	1000	35	0	2841	0	THSD7B	2	138169367	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	1545529	138169367	105030006	247	99460											
LRP1B	53353	broad.mit.edu	37	chr2	141093413	141093413	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaattcaggacactacaAggaaacaaaacaacacacca	4	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141093413	T	T	141093413	1	4	102	0	1	0	0	0	0	0	0	0	9042	87	3	5		5	LRP1B	2	141093413	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2924046	141093413	102105960	248	99461											
LRP1B	53353	broad.mit.edu	37	chr2	141122213	141122213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaagtataatctagagcCacgtgaaatgccataccaca	6	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141122213	A	A	141122213	1	1	102	0	1	0	0	0	0	0	0	0	9042	609	21	2		2	LRP1B	2	141122213	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	28800	141122213	102077160	249	99462											
LRP1B	53353	broad.mit.edu	37	chr2	141291702	141291702	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagcctcttcgacagctTctgttttcttataaataaaa	5	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141291702	A	A	141291702	3	1	102	1	0	0	0	0	1	0	0	0	9042	1780	62	5	6329	5	LRP1B	2	141291702	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	169489	141291702	101907671	250	99463											
LRP1B	53353	broad.mit.edu	37	chr2	141625409	141625409	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaatagcatctgacctacaGaaagataaatacatgagtag	7	6	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141625409	T	T	141625409	1	4	102	0	1	0	0	0	0	0	0	0	9042	957	33	3		3	LRP1B	2	141625409	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	333707	141625409	101573964	251	99464											
ZEB2	9839	broad.mit.edu	37	chr2	145187456	145187456	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttggctcacgtgtggggAggactcatggttgggcacac	16	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145187456	G	G	145187456	3	3	102	1	0	0	0	0	1	0	0	0	17750	304	11	5	3465	5	ZEB2	2	145187456	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3562047	145187456	98011917	252	99465											
NEB	4703	broad.mit.edu	37	chr2	152432208	152432208	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtctgttgtagtacttaCattgctcacattaagagcat	8	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152432208	T	T	152432208	5	4	102	1	0	0	0	0	0	0	1	0	10397	492	17	4	8976	4	NEB	2	152432208	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	7244752	152432208	90767165	253	99466											
NEB	4703	broad.mit.edu	37	chr2	152553805	152553805	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcataagatgcagccattGtattcatgccctgagaaaaa	9	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152553805	A	A	152553805	1	1	102	0	1	0	0	0	0	0	0	0	10397	1392	48	4		4	NEB	2	152553805	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	121597	152553805	90645568	254	99467											
PRPF40A	55660	broad.mit.edu	37	chr2	153520576	153520576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaataaagcaccctttcccCcaacacaatcacctttgcat	2	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153520576	A	A	153520576	1	1	102	0	1	0	0	0	0	0	0	0	12677	638	22	2		2	PRPF40A	2	153520576	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	966771	153520576	89678797	255	99468											
GPD2	2820	broad.mit.edu	37	chr2	157332584	157332584	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactatcccaattaacttcTttttgtttcttatttttctt	1	8	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157332584	C	C	157332584	1	2	102	0	1	0	0	0	0	0	0	0	6671	1624	56	5		5	GPD2	2	157332584	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3812008	157332584	85866789	256	99469											
GPD2	2820	broad.mit.edu	37	chr2	157426037	157426037	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taggcttgtgcaggattatgGacttgaaagcgaggtgagtg	16	4	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157426037	C	C	157426037	3	2	102	1	0	0	0	0	1	0	0	0	6671	1174	41	4	1501	4	GPD2	2	157426037	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	93453	157426037	85773336	257	99470											
GALNT5	11227	broad.mit.edu	37	chr2	158142619	158142619	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacatggcttaataagggccAggctggcaggagcacagaat	14	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158142619	T	T	158142619	3	4	102	1	0	0	0	0	1	0	0	0	6278	179	7	5	1724	5	GALNT5	2	158142619	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	716582	158142619	85056754	258	99471											
ACVR1	90	broad.mit.edu	37	chr2	158656063	158656063	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcataaatatctaactgcaGgaagacaaattaagcatacc	6	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158656063	C	C	158656063	1	2	102	0	1	0	0	0	0	0	0	0	220	1015	35	4		4	ACVR1	2	158656063	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	513444	158656063	84543310	259	99472											
BAZ2B	29994	broad.mit.edu	37	chr2	160194283	160194283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctctggacacatccaacCctatatatcaagagaatagt	7	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160194283	A	A	160194283	3	1	102	1	0	0	0	0	1	0	0	0	1337	637	22	2	1075	2	BAZ2B	2	160194283	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1538220	160194283	83005090	260	99473											
ITGB6	3694	broad.mit.edu	37	chr2	161056431	161056431	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacagatcaaataaaacatGacttcagatctagtttctga	6	7	4	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161056431	T	T	161056431	1	4	102	0	1	0	0	0	0	0	0	0	7969	1305	45	3		3	ITGB6	2	161056431	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	862148	161056431	82142942	261	99474											
DPP4	1803	broad.mit.edu	37	chr2	162864962	162864962	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagaacctctaagatgaatCagcctattattcgctgtaaa	6	8	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162864962	A	A	162864962	1	1	102	0	1	0	0	0	0	0	0	0	4769	841	29	3		3	DPP4	2	162864962	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1808531	162864962	80334411	262	99475											
DPP4	1803	broad.mit.edu	37	chr2	162895493	162895493	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgaccatgtgacccacTgtgtgttgtttggaatcctc	11	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162895493	A	A	162895493	3	1	102	1	0	0	0	0	1	0	0	0	4769	1580	55	5	1922	5	DPP4	2	162895493	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	30531	162895493	80303880	263	99476											
SCN1A	6323	broad.mit.edu	37	chr2	166901690	166901690	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctcttccccaccagactGctctttctgttttcttttct	3	14	5	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166901690	A	A	166901690	4	1	102	1	0	0	0	0	0	1	0	0	14027	1328	46	4	4572	4	SCN1A	2	166901690	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4006197	166901690	76297683	264	99477											
SCN9A	6335	broad.mit.edu	37	chr2	167060953	167060953	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcttctgttcttctgtcaTaaagatgtcttgacctccaa	5	10	6	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167060953	A	A	167060953	3	1	102	1	0	0	0	0	1	0	0	0	14038	1406	49	5	1558	5	SCN9A	2	167060953	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	159263	167060953	76138420	265	99478											
SCN9A	6335	broad.mit.edu	37	chr2	167168061	167168061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggctctgacaccatgCcgggaggaatgtccccatag	13	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167168061	A	A	167168061	3	1	102	1	0	0	0	0	1	0	0	0	14038	739	26	3	5831	3	SCN9A	2	167168061	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	107108	167168061	76031312	266	99479											
XIRP2	129446	broad.mit.edu	37	chr2	168107344	168107344	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttctcagtcccctaaaaagGacagttatgttgaaccccca	6	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168107344	A	A	168107344	3	1	102	1	0	0	0	0	1	0	0	0	17557	1174	41	4	9472	4	XIRP2	2	168107344	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	939283	168107344	75092029	267	99480											
LRP2	4036	broad.mit.edu	37	chr2	170042416	170042416	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaatatcaacacaagtccGcttgtcagacatgagcttgt	7	10	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170042416	T	T	170042416	2	4	102	1	0	0	0	0	0	0	0	1	9043	1086	38	3		3	LRP2	2	170042416	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1935072	170042416	73156957	268	99481											
LRP2	4036	broad.mit.edu	37	chr2	170145683	170145683	+	Intron	SNP	T	A	A													aagaaaagaactttgttaaaTgaatggtgacctctggacaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170145683	A	A	170145683	1	1	102	0	1	0	0	0	0	0	0	0	9043	1479	51	5		5	LRP2	2	170145683	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	103267	170145683	73053690	269	99482	430	2									
LRP2	4036	broad.mit.edu	37	chr2	170145685	170145685	+	Intron	SNP	A	G	G													gaaaagaactttgttaaatgAatggtgacctctggacaaga							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170145685	G	G	170145685	1	3	102	0	1	0	0	0	0	0	0	0	9043	261	9	5		5	LRP2	2	170145685	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2	170145685	73053688	270	99483	430	2									
GAD1	2571	broad.mit.edu	37	chr2	171675254	171675254	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgctgggacgtcgggaggctGagctggcggaaagggaaggg	22	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171675254	C	C	171675254	1	2	102	0	1	0	0	0	0	0	0	0	6239	1305	45	4		4	GAD1	2	171675254	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1529569	171675254	71524119	271	99484											
TLK1	9874	broad.mit.edu	37	chr2	171853282	171853282	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaaatggcttaaaaaaaaAattaaatgttgagatacttt	5	4	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171853282	T	T	171853282	1	4	102	0	1	0	0	0	0	0	0	0	16066	29	1	5		5	TLK1	2	171853282	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	178028	171853282	71346091	272	99485											
DLX1	1745	broad.mit.edu	37	chr2	172952919	172952919	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaacgcgggctcctatatCcccagctacacatcgtggta	10	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172952919	A	A	172952919	2	1	102	1	0	0	0	0	0	0	0	1	4610	845	30	3		3	DLX1	2	172952919	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1099637	172952919	70246454	273	99486											
WIPF1	7456	broad.mit.edu	37	chr2	175446018	175446018	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactgttcctctccatggtaGatagcctttttttacttact	5	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175446018	A	A	175446018	1	1	102	0	1	0	0	0	0	0	0	0	17494	957	33	4		4	WIPF1	2	175446018	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2493099	175446018	67753355	274	99487											
TTN	7273	broad.mit.edu	37	chr2	179408023	179408023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctaccaccatcgtagagtGgtttttcccaggcaagggta	12	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179408023	T	T	179408023	3	4	102	1	0	0	0	0	1	0	0	0	16861	1348	47	2	11366	2	TTN	2	179408023	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3962005	179408023	63791350	275	99488											
TTN	7273	broad.mit.edu	37	chr2	179413591	179413591	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatgtctaactcaggagctGttaaccggtcaactgcttta	8	10	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179413591	C	C	179413591	3	2	102	1	0	0	0	0	1	0	0	0	16861	1377	48	4	15313	4	TTN	2	179413591	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	5568	179413591	63785782	276	99489											
TTN	7273	broad.mit.edu	37	chr2	179432942	179432942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactctaaggcaaagctttGtccatatctgttttcggcaa	8	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179432942	T	T	179432942	3	4	102	1	0	0	0	0	1	0	0	0	16861	1386	48	3	30210	3	TTN	2	179432942	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	19351	179432942	63766431	277	99490											
TTN	7273	broad.mit.edu	37	chr2	179434396	179434396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtcagcatgttctccaactCcagctttattaatagcacag	6	12	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179434396	A	A	179434396	3	1	102	1	0	0	0	0	1	0	0	0	16861	855	30	3	31664	3	TTN	2	179434396	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1454	179434396	63764977	278	99491											
TTN	7273	broad.mit.edu	37	chr2	179442278	179442278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaatcagaaaaggaaggaGgcttaatttgctttaaaaaa	8	3	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179442278	A	A	179442278	1	1	102	0	1	0	0	0	0	0	0	0	16861	1015	35	4		4	TTN	2	179442278	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	7882	179442278	63757095	279	99492											
TTN	7273	broad.mit.edu	37	chr2	179529215	179529216	+	Missense_Mutation	DNP	GG	TT	TT													ggtacaacttcagccctttgGggaggatgcactttcttttc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179529216	TT	TT	179529215	3	4	102	1	0	0	0	0	1	0	0	0	16861	1247	43	2		2	TTN	2	179529215	Missense_Mutation	DNP	GG	TCGA-38-4631-01A-01D-1753-08	86937	179529215	63670158	280	99493											
TTN	7273	broad.mit.edu	37	chr2	179588928	179588928	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaatagaagagacttgaaAgaaggaaacttgtaaaagga	11	2	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179588928	G	G	179588928	1	3	102	0	1	0	0	0	0	0	0	0	16861	87	3	5		5	TTN	2	179588928	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	59713	179588928	63610445	281	99494											
TTN	7273	broad.mit.edu	37	chr2	179594234	179594234	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtaacttcacactccagctCcacgtcactatattttacta	3	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179594234	A	A	179594234	4	1	102	1	0	0	0	0	0	1	0	0	16861	864	30	3	86076	3	TTN	2	179594234	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	5306	179594234	63605139	282	99495											
TTN	7273	broad.mit.edu	37	chr2	179610535	179610535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactaagcactgaaaatatGctgctgtacctattggtgca	9	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179610535	T	T	179610535	3	4	102	1	0	0	0	0	1	0	0	0	16861	1319	46	3	93705	3	TTN	2	179610535	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	16301	179610535	63588838	283	99496											
TTN	7273	broad.mit.edu	37	chr2	179614934	179614934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgggcgccttttgcttGgtcaaacaccaatgctaact	10	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179614934	T	T	179614934	3	4	102	1	0	0	0	0	1	0	0	0	16861	1357	47	2	98104	2	TTN	2	179614934	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4399	179614934	63584439	284	99497											
ITGA4	3676	broad.mit.edu	37	chr2	182344887	182344887	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaattgtgatgggggccccAggatcatcttactggactgg	13	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182344887	T	T	182344887	2	4	102	1	0	0	0	0	0	0	0	1	7948	175	7	5		5	ITGA4	2	182344887	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	2729953	182344887	60854486	285	99498											
PDE1A	5136	broad.mit.edu	37	chr2	183032947	183032947	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaaattagagctgccacCatgcacgaggttttacttaa	9	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183032947	A	A	183032947	1	1	102	0	1	0	0	0	0	0	0	0	11727	609	21	2		2	PDE1A	2	183032947	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	688060	183032947	60166426	286	99499											
DNAJC10	54431	broad.mit.edu	37	chr2	183586760	183586760	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttaaaattaggtatttatGatgatgatcctgaaatcata	6	3	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183586760	A	A	183586760	3	1	102	1	0	0	0	0	1	0	0	0	4669	1290	45	4	386	4	DNAJC10	2	183586760	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	553813	183586760	59612613	287	99500											
ZC3H15	55854	broad.mit.edu	37	chr2	187371499	187371499	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacatcccaagagatgtAgatgaaacaggtattactgt	9	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187371499	G	G	187371499	2	3	102	1	0	0	0	0	0	0	0	1	17693	407	15	5		5	ZC3H15	2	187371499	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	3784739	187371499	55827874	288	99501											
ITGAV	3685	broad.mit.edu	37	chr2	187520885	187520885	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatttacttcttaaggaatAaagatctctgtttacatgaa	5	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187520885	G	G	187520885	1	3	102	0	1	0	0	0	0	0	0	0	7958	377	13	5		5	ITGAV	2	187520885	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	149386	187520885	55678488	289	99502											
DIRC1	116093	broad.mit.edu	37	chr2	189599535	189599535	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctggacctctatacacatgGggtgggcattgctgagtggt	14	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189599535	C	C	189599535	3	2	102	1	0	0	0	0	1	0	0	0	4573	1232	43	4	205	4	DIRC1	2	189599535	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2078650	189599535	53599838	290	99503											
COL3A1	1281	broad.mit.edu	37	chr2	189868286	189868286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagttccataaagagaatGtaaaaattgtaatcgctcat	6	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189868286	T	T	189868286	1	4	102	0	1	0	0	0	0	0	0	0	3720	1392	48	3		3	COL3A1	2	189868286	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	268751	189868286	53331087	291	99504											
COL3A1	1281	broad.mit.edu	37	chr2	189868867	189868867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcctggtgcccagggcccaCcagtaagtaacttcattttt	9	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189868867	A	A	189868867	3	1	102	1	0	0	0	0	1	0	0	0	3720	507	18	3	2975	3	COL3A1	2	189868867	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	581	189868867	53330506	292	99505											
COL5A2	1290	broad.mit.edu	37	chr2	189917528	189917528	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaggaacaccattaggacCctgaatagaaacaaacaaaa	6	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189917528	G	G	189917528	3	3	102	1	0	0	0	0	1	0	0	0	3729	637	22	4	1897	4	COL5A2	2	189917528	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	48661	189917528	53281845	293	99506											
STK17B	9262	broad.mit.edu	37	chr2	197002295	197002295	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttctctatcaccacaggttCcattacaggaggatttagaa	7	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197002295	T	T	197002295	3	4	102	1	0	0	0	0	1	0	0	0	15409	855	30	4	127	4	STK17B	2	197002295	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	7084767	197002295	46197078	294	99507											
HECW2	57520	broad.mit.edu	37	chr2	197298149	197298149	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgggctgaactagccatcCcgtctgcttctctgggattg	11	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197298149	G	G	197298149	1	3	102	0	1	0	0	0	0	0	0	0	7110	638	22	4		4	HECW2	2	197298149	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	295854	197298149	45901224	295	99508											
GTF3C3	9330	broad.mit.edu	37	chr2	197629201	197629201	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaattgtcatttctattTtggagttacaaataataagc	6	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197629201	A	A	197629201	1	1	102	0	1	0	0	0	0	0	0	0	6939	1856	64	5		5	GTF3C3	2	197629201	3'UTR	SNP	T	TCGA-38-4631-01A-01D-1753-08	331052	197629201	45570172	296	99509											
ANKRD44	91526	broad.mit.edu	37	chr2	197943539	197943540	+	Splice_Site	DNP	CT	TG	TG													gaagcagaaactctagacatCtgtaagtataaagatgaagt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	197943540	TG	TG	197943539	5	4	102	1	0	0	0	0	0	0	1	0	672	927	32	4	1340	4	ANKRD44	2	197943539	Splice_Site	DNP	CT	TCGA-38-4631-01A-01D-1753-08	314338	197943539	45255834	297	99510											
PLCL1	5334	broad.mit.edu	37	chr2	198950287	198950287	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgatggaccttcacacGggctggtttcttcaaaacgg	10	11	3	1	rs144487956	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198950287	T	T	198950287	2	4	102	1	0	0	0	0	0	0	0	1	12134	1103	39	1		1	PLCL1	2	198950287	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1006748	198950287	44249086	298	99511											
MAP2	4133	broad.mit.edu	37	chr2	210574774	210574774	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggaacccctagctatccCaggacccctcacacaccagg	7	19	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210574774	T	T	210574774	2	4	102	1	0	0	0	0	0	0	0	1	9327	581	21	4		4	MAP2	2	210574774	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	11624487	210574774	32624599	299	99512											
LANCL1	10314	broad.mit.edu	37	chr2	211301170	211301170	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatataaaagaaagttccatTgatattccttcctgatagat	6	6	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211301170	A	A	211301170	1	1	102	0	1	0	0	0	0	0	0	0	8692	1827	63	5		5	LANCL1	2	211301170	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	726396	211301170	31898203	300	99513											
CPS1	1373	broad.mit.edu	37	chr2	211473345	211473345	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattttgttaaatttgtgacAccattgacagtgttaaagtt	7	4	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211473345	T	T	211473345	1	4	102	0	1	0	0	0	0	0	0	0	3855	174	6	5		5	CPS1	2	211473345	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	172175	211473345	31726028	301	99514											
ERBB4	2066	broad.mit.edu	37	chr2	212248511	212248511	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtagtctgggtgctgaagGgtgctccgaggtggcaggct	19	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212248511	A	A	212248511	2	1	102	1	0	0	0	0	0	0	0	1	5251	1219	43	4		4	ERBB4	2	212248511	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	775166	212248511	30950862	302	99515											
ERBB4	2066	broad.mit.edu	37	chr2	212530091	212530091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggtggcactcccgatctgGatcagcatacttgaaaatga	11	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212530091	T	T	212530091	3	4	102	1	0	0	0	0	1	0	0	0	5251	1174	41	3	2154	3	ERBB4	2	212530091	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	281580	212530091	30669282	303	99516											
IKZF2	22807	broad.mit.edu	37	chr2	213914437	213914437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagttggtgacacttacCagaatgggtcctgaggtgtc	14	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213914437	A	A	213914437	3	1	102	1	0	0	0	0	1	0	0	0	7685	608	21	2	1022	2	IKZF2	2	213914437	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1384346	213914437	29284936	304	99517											
ABCA12	26154	broad.mit.edu	37	chr2	215823923	215823923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaacaattttatttgggGgaccttttttttttaaagga	7	4	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215823923	T	T	215823923	1	4	102	0	1	0	0	0	0	0	0	0	30	1247	43	2		2	ABCA12	2	215823923	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1909486	215823923	27375450	305	99518											
ABCA12	26154	broad.mit.edu	37	chr2	215928675	215928675	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttagatcatcacatttaTagacagagaaaacaaaattg	5	5	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215928675	C	C	215928675	1	2	102	0	1	0	0	0	0	0	0	0	30	1421	49	5		5	ABCA12	2	215928675	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	104752	215928675	27270698	306	99519											
PNKD	25953	broad.mit.edu	37	chr2	219204767	219204767	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaggagtgaaggtgcttcCcatccctgtcctctcggaca	10	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219204767	G	G	219204767	3	3	102	1	0	0	0	0	1	0	0	0	12241	623	22	4	747	4	PNKD	2	219204767	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3276092	219204767	23994606	307	99520											
TTLL4	9654	broad.mit.edu	37	chr2	219618722	219618722	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagaattttttttatggttAttacatttccatgtaatttt	4	3	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219618722	G	G	219618722	1	3	102	0	1	0	0	0	0	0	0	0	16855	464	16	5		5	TTLL4	2	219618722	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	413955	219618722	23580651	308	99521											
CCDC108	255101	broad.mit.edu	37	chr2	219890890	219890890	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctgcaggacctgcagagGggccagacccacggaaaagc	14	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219890890	A	A	219890890	1	1	102	0	1	0	0	0	0	0	0	0	2769	1247	43	4		4	CCDC108	2	219890890	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	272168	219890890	23308483	309	99522											
ANKZF1	55139	broad.mit.edu	37	chr2	220098546	220098546	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctttgttctttggaggcaAgggagcacccctgcaaaggg	14	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220098546	C	C	220098546	3	2	102	1	0	0	0	0	1	0	0	0	693	72	3	5	955	5	ANKZF1	2	220098546	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	207656	220098546	23100827	310	99523											
KIAA1486	57624	broad.mit.edu	37	chr2	226446931	226446931	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgatgaccagagcgaggcCgtctacgaggaaatgaagta	14	8	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226446931	T	T	226446931	2	4	102	1	0	0	0	0	0	0	0	1	8307	639	23	4		4	KIAA1486	2	226446931	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	6348385	226446931	16752442	311	99524											
COL4A3	1285	broad.mit.edu	37	chr2	228119376	228119376	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctaattaatacagggacTgcctggagaatcatatggat	10	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228119376	A	A	228119376	3	1	102	1	0	0	0	0	1	0	0	0	3723	1580	55	5	891	5	COL4A3	2	228119376	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1672445	228119376	15079997	312	99525											
WDR69	164781	broad.mit.edu	37	chr2	228735029	228735029	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagacccacaattctctttgCgtacaccgtgctcacagttc	6	15	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228735029	G	G	228735029	1	3	102	0	1	0	0	0	0	0	0	0	17446	783	27	4		4	WDR69	2	228735029	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	615653	228735029	14464344	313	99526											
SPHKAP	80309	broad.mit.edu	37	chr2	228882763	228882763	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagttgccatggagacgaccGtgtctgctaattcttccgca	10	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228882763	C	C	228882763	3	2	102	1	0	0	0	0	1	0	0	0	15166	1145	40	4	2319	4	SPHKAP	2	228882763	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	147734	228882763	14316610	314	99527											
SP110	3431	broad.mit.edu	37	chr2	231067564	231067564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctttcagatctctgtacCcctgtacctcacttttctcc	3	16	5	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231067564	A	A	231067564	1	1	102	0	1	0	0	0	0	0	0	0	15075	638	22	2		2	SP110	2	231067564	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2184801	231067564	12131809	315	99528											
USP40	55230	broad.mit.edu	37	chr2	234433233	234433233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagatcaccagtgagacCattcatcatgaccatcagaa	7	10	4	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234433233	A	A	234433233	1	1	102	0	1	0	0	0	0	0	0	0	17199	609	21	2		2	USP40	2	234433233	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3365669	234433233	8766140	316	99529											
HJURP	55355	broad.mit.edu	37	chr2	234746241	234746242	+	Frame_Shift_Ins	INS	-	A	A													gctacacacttttagtttccINSaatttttctagcatgaaatc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234746242	A	A	234746241	7	5	102	1	0	1	1	0	0	0	0	0	7256	593	21	0	21	0	HJURP	2	234746241	Frame_Shift_Ins	INS	-	TCGA-38-4631-01A-01D-1753-08	313008	234746241	8453132	317	99530											
TRPM8	79054	broad.mit.edu	37	chr2	234879162	234879162	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagaagttgcttctgaagttCaaaagtcactattttcccaa	6	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234879162	A	A	234879162	1	1	102	0	1	0	0	0	0	0	0	0	16717	841	29	3		3	TRPM8	2	234879162	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	132921	234879162	8320211	318	99531											
GBX2	2637	broad.mit.edu	37	chr2	237075176	237075176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acattccgcgccccccgcccCccaccctttagcggattgtc	7	21	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237075176	T	T	237075176	1	4	102	0	1	0	0	0	0	0	0	0	6343	638	22	4		4	GBX2	2	237075176	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2196014	237075176	6124197	319	99532											
COL6A3	1293	broad.mit.edu	37	chr2	238287867	238287867	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagatgatatccctttTgtttgagtgaactgcagtga	10	5	0	6			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238287867	C	C	238287867	3	2	102	1	0	0	0	0	1	0	0	0	3733	1821	63	5	7827	5	COL6A3	2	238287867	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1212691	238287867	4911506	320	99533											
ESPNL	339768	broad.mit.edu	37	chr2	239040155	239040155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctccagccagcgtcccGcctgggatacggagcctggc	14	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239040155	T	T	239040155	3	4	102	1	0	0	0	0	1	0	0	0	5297	1087	38	3	2834	3	ESPNL	2	239040155	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	752288	239040155	4159218	321	99534											
OR6B3	150681	broad.mit.edu	37	chr2	240985276	240985276	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatgtcagacacgtaccAgatctctaggaaagacatgg	12	8	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240985276	T	T	240985276	3	4	102	1	0	0	0	0	1	0	0	0	11283	188	7	5	784	5	OR6B3	2	240985276	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1945121	240985276	2214097	322	99535											
AQP12B	653437	broad.mit.edu	37	chr2	241622087	241622087	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggcccgagctcgaccagCgtcctcatctccaggaagca	11	16	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241622087	G	G	241622087	2	3	102	1	0	0	0	0	0	0	0	1	827	755	27	4		4	AQP12B	2	241622087	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	636811	241622087	1577286	323	99536											
CNTN6	27255	broad.mit.edu	37	chr3	1444003	1444003	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatacctcattttattcagaTtctgtaccggcaaaacagac	6	10	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1444003	A	A	1444003	3	1	102	1	0	0	0	0	1	0	0	0	3677	1507	52	5	2901	5	CNTN6	3	1444003	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08		1444003	196578427	324	99537											
IL5RA	3568	broad.mit.edu	37	chr3	3131951	3131951	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgagaaccctaggaaacaGagagaaattatttgtctggg	11	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3131951	T	T	3131951	1	4	102	0	1	0	0	0	0	0	0	0	7770	957	33	3		3	IL5RA	3	3131951	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1687948	3131951	194890479	325	99538											
IL5RA	3568	broad.mit.edu	37	chr3	3134157	3134157	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgactcactgttcagcaagtCctttaaaatcaacagggcac	7	11	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3134157	A	A	3134157	1	1	102	0	1	0	0	0	0	0	0	0	7770	870	30	3		3	IL5RA	3	3134157	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2206	3134157	194888273	326	99539											
ATP2B2	491	broad.mit.edu	37	chr3	10443668	10443668	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggtttgggatcagccttCaggaatgcatccccttcctt	9	12	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10443668	G	G	10443668	1	3	102	0	1	0	0	0	0	0	0	0	1144	841	29	4		4	ATP2B2	3	10443668	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	7309511	10443668	187578762	327	99540											
NUP210	23225	broad.mit.edu	37	chr3	13360750	13360750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgatcatgaccgctgtcCcagccaacagggcgaagagc	11	13	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13360750	A	A	13360750	3	1	102	1	0	0	0	0	1	0	0	0	10855	623	22	2	216	2	NUP210	3	13360750	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2917082	13360750	184661680	328	99541											
C3orf20	84077	broad.mit.edu	37	chr3	14799156	14799156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctacaaccaccagcagcGgggccgtggctccccctgca	10	18	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14799156	T	T	14799156	3	4	102	1	0	0	0	0	1	0	0	0	2235	1116	39	1	2261	1	C3orf20	3	14799156	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1438406	14799156	183223274	329	99542											
PDCD6IP	10015	broad.mit.edu	37	chr3	33906811	33906811	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctccttctgctactgctcCatctccagtgggggctggga	12	13	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33906811	T	T	33906811	3	4	102	1	0	0	0	0	1	0	0	0	11718	594	21	4	2402	4	PDCD6IP	3	33906811	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	19107655	33906811	164115619	330	99543											
MYRIP	25924	broad.mit.edu	37	chr3	39942313	39942313	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgtgttgagtaaccatgggGaggaagctggacctgtctgg	16	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39942313	C	C	39942313	2	2	102	1	0	0	0	0	0	0	0	1	10194	1161	41	4		4	MYRIP	3	39942313	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	6035502	39942313	158080117	331	99544											
ZNF619	285267	broad.mit.edu	37	chr3	40529172	40529172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcggtatttcttcagcacCagaggttccacactggggaa	11	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40529172	A	A	40529172	3	1	102	1	0	0	0	0	1	0	0	0	18170	595	21	2	1331	2	ZNF619	3	40529172	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	586859	40529172	157493258	332	99545											
KBTBD5	131377	broad.mit.edu	37	chr3	42729870	42729870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagctggtctagggcctgGggtgggatttggagctagag	19	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42729870	T	T	42729870	1	4	102	0	1	0	0	0	0	0	0	0	8066	1247	43	2		2	KBTBD5	3	42729870	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2200698	42729870	155292560	333	99546											
ZDHHC3	51304	broad.mit.edu	37	chr3	44975430	44975430	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcctacacagttgttgaCccagggacagtggtggtcca	12	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44975430	G	G	44975430	3	3	102	1	0	0	0	0	1	0	0	0	17742	507	18	4	778	4	ZDHHC3	3	44975430	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2245560	44975430	153047000	334	99547											
LZTFL1	54585	broad.mit.edu	37	chr3	45875808	45875808	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttgaagaagaaagcaaAgataaaaattattcatttaa	5	4	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45875808	G	G	45875808	1	3	102	0	1	0	0	0	0	0	0	0	9224	87	3	5		5	LZTFL1	3	45875808	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	900378	45875808	152146622	335	99548											
LTF	4057	broad.mit.edu	37	chr3	46486725	46486725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttccacagcacaatatgCctaccctccagggtggccca	9	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46486725	A	A	46486725	1	1	102	0	1	0	0	0	0	0	0	0	9166	754	26	3		3	LTF	3	46486725	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	610917	46486725	151535705	336	99549											
ALS2CL	259173	broad.mit.edu	37	chr3	46723032	46723032	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgccttctcgccagtgaCacttgtaacagtcgaacttg	9	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46723032	G	G	46723032	3	3	102	1	0	0	0	0	1	0	0	0	551	478	17	4	1689	4	ALS2CL	3	46723032	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	236307	46723032	151299398	337	99550											
SETD2	29072	broad.mit.edu	37	chr3	47158147	47158147	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacgattaagacaatcttCcccacatgctatttcacctt	4	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47158147	A	A	47158147	4	1	102	1	0	0	0	0	0	1	0	0	14244	864	30	3	3214	3	SETD2	3	47158147	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	435115	47158147	150864283	338	99551											
DHX30	22907	broad.mit.edu	37	chr3	47870539	47870539	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacactgcacataaaatggcCcaagagcgtggaggtagaag	12	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47870539	T	T	47870539	3	4	102	1	0	0	0	0	1	0	0	0	4544	623	22	4	306	4	DHX30	3	47870539	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	712392	47870539	150151891	339	99552											
RNF123	63891	broad.mit.edu	37	chr3	49743302	49743302	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgttgtgggaatgggacCgccctgggcctaaggttggg	18	8	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49743302	T	T	49743302	1	4	102	0	1	0	0	0	0	0	0	0	13544	667	23	4		4	RNF123	3	49743302	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1872763	49743302	148279128	340	99553											
GNAI2	2771	broad.mit.edu	37	chr3	50289056	50289056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctcctgcttaggcccCtggttgctaaggctcagtgt	12	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50289056	A	A	50289056	1	1	102	0	1	0	0	0	0	0	0	0	6569	696	24	2		2	GNAI2	3	50289056	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	545754	50289056	147733374	341	99554											
DNAH1	25981	broad.mit.edu	37	chr3	52432999	52432999	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaatactgtgcctgagctcTggagtgccaaggcctaccca	10	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52432999	A	A	52432999	3	1	102	1	0	0	0	0	1	0	0	0	4637	1580	55	5	12521	5	DNAH1	3	52432999	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2143943	52432999	145589431	342	99555											
DCP1A	55802	broad.mit.edu	37	chr3	53321478	53321478	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacattcttaagaaatgagtCtctttctcataggctcaatt	5	8	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53321478	T	T	53321478	1	4	102	0	1	0	0	0	0	0	0	0	4331	928	32	4		4	DCP1A	3	53321478	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	888479	53321478	144700952	343	99556											
SELK	58515	broad.mit.edu	37	chr3	53925857	53925857	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccaccgggcgcctggcCcctgtcggtttctgtatctc	13	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53925857	A	A	53925857	1	1	102	0	1	0	0	0	0	0	0	0	14128	638	22	2		2	SELK	3	53925857	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	604379	53925857	144096573	344	99557											
CACNA2D3	55799	broad.mit.edu	37	chr3	54660586	54660586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgatcgaccactacctGggcgagttctccatcaccta	9	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54660586	T	T	54660586	1	4	102	0	1	0	0	0	0	0	0	0	2576	1363	47	2		2	CACNA2D3	3	54660586	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	734729	54660586	143361844	345	99558											
CADPS	8618	broad.mit.edu	37	chr3	62467524	62467524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgggtaggttcacattgGgtaggttactggttaaactc	12	6	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62467524	T	T	62467524	3	4	102	1	0	0	0	0	1	0	0	0	2596	1232	43	2	1050	2	CADPS	3	62467524	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	7806938	62467524	135554906	346	99559											
CADPS	8618	broad.mit.edu	37	chr3	62498519	62498519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaattaatgagcaagtGgaccaaaatgccccccactt	8	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62498519	T	T	62498519	1	4	102	0	1	0	0	0	0	0	0	0	2596	1363	47	2		2	CADPS	3	62498519	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	30995	62498519	135523911	347	99560											
CADPS	8618	broad.mit.edu	37	chr3	62535709	62535709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctggacccacaggatgCggtcttgttcatcgtcactg	12	12	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62535709	A	A	62535709	3	1	102	1	0	0	0	0	1	0	0	0	2596	768	27	3	2379	3	CADPS	3	62535709	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	37190	62535709	135486721	348	99561											
CNTN3	5067	broad.mit.edu	37	chr3	74334493	74334493	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattaactgtggcgctaaaAggcccagcgccggcactgtt	11	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74334493	G	G	74334493	2	3	102	1	0	0	0	0	0	0	0	1	3674	59	3	5		5	CNTN3	3	74334493	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	11798784	74334493	123687937	349	99562											
CNTN3	5067	broad.mit.edu	37	chr3	74411127	74411127	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtttacaatccaagctgacCaggctgcccacctgcacctg	9	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74411127	G	G	74411127	2	3	102	1	0	0	0	0	0	0	0	1	3674	581	21	4		4	CNTN3	3	74411127	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	76634	74411127	123611303	350	99563											
CNTN3	5067	broad.mit.edu	37	chr3	74413689	74413689	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctatgcattggaacatgccaGaatcagtcacacttaggttt	8	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74413689	T	T	74413689	3	4	102	1	0	0	0	0	1	0	0	0	3674	942	33	3	2000	3	CNTN3	3	74413689	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2562	74413689	123608741	351	99564											
CADM2	253559	broad.mit.edu	37	chr3	86063991	86063991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatgaagccctccacctgCctgacatcaagttttttcct	5	14	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86063991	A	A	86063991	1	1	102	0	1	0	0	0	0	0	0	0	2593	754	26	3		3	CADM2	3	86063991	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	11650302	86063991	111958439	352	99565											
OR5H1	26341	broad.mit.edu	37	chr3	97852271	97852272	+	Frame_Shift_Ins	INS	-	A	A													cttttccacctgtggagcccINSatctcttctctgtctcttta							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852272	A	A	97852271	7	5	102	1	0	1	1	0	0	0	0	0	11253	594	21	0	732	0	OR5H1	3	97852271	Frame_Shift_Ins	INS	-	TCGA-38-4631-01A-01D-1753-08	11788280	97852271	100170159	353	99566											
OR5K4	403278	broad.mit.edu	37	chr3	98073296	98073296	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattaatgaactaatgatatAtatcttttcaataccaattc	2	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98073296	G	G	98073296	3	3	102	1	0	0	0	0	1	0	0	0	11263	449	16	5	601	5	OR5K4	3	98073296	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	221025	98073296	99949134	354	99567											
OR5K1	26339	broad.mit.edu	37	chr3	98188804	98188804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctatgtggccatatgcaaCccactgcagtaccacatcat	7	14	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98188804	A	A	98188804	3	1	102	1	0	0	0	0	1	0	0	0	11260	506	18	3	386	3	OR5K1	3	98188804	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	115508	98188804	99833626	355	99568											
ABI3BP	25890	broad.mit.edu	37	chr3	100493989	100493989	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactcacccatccccaccaAcatttaaaatcttttgcacc	2	16	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100493989	T	T	100493989	1	4	102	0	1	0	0	0	0	0	0	0	91	58	2	5		5	ABI3BP	3	100493989	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2305185	100493989	97528441	356	99569											
ABI3BP	25890	broad.mit.edu	37	chr3	100645145	100645145	+	Splice_Site	DEL	C	-	-													cccgatacccaaacaccttaCcaactatagcttctgtgaat							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100645145	-	-	100645145	8	5	102	1	0	1	0	1	0	0	1	0	91	521	18	0	3082	0	ABI3BP	3	100645145	Splice_Site	DEL	C	TCGA-38-4631-01A-01D-1753-08	151156	100645145	97377285	357	99570											
IMPG2	50939	broad.mit.edu	37	chr3	100948516	100948516	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttacctgggacaatatttcTgttgaagaaaaacaggtgca	9	6	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100948516	A	A	100948516	1	1	102	0	1	0	0	0	0	0	0	0	7799	1595	55	5		5	IMPG2	3	100948516	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	303371	100948516	97073914	358	99571											
NR1I2	8856	broad.mit.edu	37	chr3	119533825	119533825	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccatccttgctgccaGggacttgcccatcgaggacc	9	18	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119533825	T	T	119533825	5	4	102	1	0	0	0	0	0	0	1	0	10715	1014	35	2	933	2	NR1I2	3	119533825	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	18585309	119533825	78488605	359	99572											
GPR156	165829	broad.mit.edu	37	chr3	119887271	119887271	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaacaaaagatgccgcCgagggttccatagtgcccac	9	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119887271	T	T	119887271	1	4	102	0	1	0	0	0	0	0	0	0	6726	667	23	4		4	GPR156	3	119887271	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	353446	119887271	78135159	360	99573											
GPR156	165829	broad.mit.edu	37	chr3	119900182	119900182	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccagtcaggccagccagGtaggcaccatacagcaggag	14	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119900182	T	T	119900182	4	4	102	1	0	0	0	0	0	1	0	0	6726	1256	44	3	1733	3	GPR156	3	119900182	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	12911	119900182	78122248	361	99574											
POLQ	10721	broad.mit.edu	37	chr3	121230884	121230884	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagatactctcgcctataacCaaaagatacacatttgcaaa	4	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121230884	G	G	121230884	1	3	102	0	1	0	0	0	0	0	0	0	12303	609	21	4		4	POLQ	3	121230884	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1330702	121230884	76791546	362	99575											
IQCB1	9657	broad.mit.edu	37	chr3	121489381	121489381	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggatctacttaggaagagCtcaggttctttcccttctgc	9	11	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121489381	G	G	121489381	3	3	102	1	0	0	0	0	1	0	0	0	7873	796	28	4	192	4	IQCB1	3	121489381	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	258497	121489381	76533049	363	99576											
CD86	942	broad.mit.edu	37	chr3	121822330	121822330	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctttcctcttgtttctcCctccctaatccttaaccttc	1	19	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121822330	T	T	121822330	1	4	102	0	1	0	0	0	0	0	0	0	3073	638	22	4		4	CD86	3	121822330	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	332949	121822330	76200100	364	99577											
SEMA5B	54437	broad.mit.edu	37	chr3	122629686	122629686	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaagaaggctcccaCcttgaattccatgggtgtgt	9	8	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122629686	G	G	122629686	5	3	102	1	0	0	0	0	0	0	1	0	14151	521	18	4	165	4	SEMA5B	3	122629686	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	807356	122629686	75392744	365	99578											
SEMA5B	54437	broad.mit.edu	37	chr3	122634241	122634241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtttccctagttctcccCaccctggtccaaggcagaca	7	18	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122634241	A	A	122634241	1	1	102	0	1	0	0	0	0	0	0	0	14151	609	21	2		2	SEMA5B	3	122634241	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4555	122634241	75388189	366	99579											
ADCY5	111	broad.mit.edu	37	chr3	123166346	123166346	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccccgctgagcactgcGgcccgcatgcgcacgggcag	14	17	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123166346	T	T	123166346	2	4	102	1	0	0	0	0	0	0	0	1	297	1103	39	1		1	ADCY5	3	123166346	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	532105	123166346	74856084	367	99580											
KALRN	8997	broad.mit.edu	37	chr3	124432080	124432080	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttacattttatacaaggtCctatcatttgcaaagtgctg	7	7	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124432080	A	A	124432080	1	1	102	0	1	0	0	0	0	0	0	0	8045	870	30	3		3	KALRN	3	124432080	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1265734	124432080	73590350	368	99581											
CCDC37	348807	broad.mit.edu	37	chr3	126114802	126114802	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtgaggatctcctttagAagaggagaagccttgcatca	12	8	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126114802	G	G	126114802	1	3	102	0	1	0	0	0	0	0	0	0	2836	261	9	5		5	CCDC37	3	126114802	5'UTR	SNP	A	TCGA-38-4631-01A-01D-1753-08	1682722	126114802	71907628	369	99582											
CCDC37	348807	broad.mit.edu	37	chr3	126132879	126132879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccagagacagagaccacCgcctggaagagctggctccc	12	16	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126132879	T	T	126132879	1	4	102	0	1	0	0	0	0	0	0	0	2836	667	23	4		4	CCDC37	3	126132879	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	18077	126132879	71889551	370	99583											
UROC1	131669	broad.mit.edu	37	chr3	126207126	126207126	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctgcacagccatgtctgCggaaatagagacgcctctgc	11	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126207126	T	T	126207126	1	4	102	0	1	0	0	0	0	0	0	0	17154	783	27	4		4	UROC1	3	126207126	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	74247	126207126	71815304	371	99584											
C3orf22	152065	broad.mit.edu	37	chr3	126270897	126270897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaggggcagctgcaccGtgttcgagtcgtttgtgacc	14	11	1	1	rs145199781	byFrequency	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126270897	T	T	126270897	3	4	102	1	0	0	0	0	1	0	0	0	2237	1145	40	3	275	3	C3orf22	3	126270897	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	63771	126270897	71751533	372	99585											
CHCHD6	84303	broad.mit.edu	37	chr3	126449365	126449365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacttcgtggaccctggGgtgccactgacaggcccttt	13	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126449365	T	T	126449365	1	4	102	0	1	0	0	0	0	0	0	0	3351	1247	43	2		2	CHCHD6	3	126449365	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	178468	126449365	71573065	373	99586											
COPG	22820	broad.mit.edu	37	chr3	128993975	128993975	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcccttcagaacatggggGagtggtggtggcacaaaggg	17	7	1	1	rs112616452		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128993975	T	T	128993975	1	4	102	0	1	0	0	0	0	0	0	0	3763	1189	41	3		3	COPG	3	128993975	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2544610	128993975	69028455	374	99587											
IFT122	55764	broad.mit.edu	37	chr3	129239079	129239079	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggctgctgcccctactgcCgcaggtgcaaggatgaccct	12	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129239079	T	T	129239079	3	4	102	1	0	0	0	0	1	0	0	0	7625	652	23	4	3975	4	IFT122	3	129239079	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	245104	129239079	68783351	375	99588											
COL6A6	131873	broad.mit.edu	37	chr3	130290119	130290119	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggattgatggtgccaatccCgtggagctgttagccatggc	15	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130290119	G	G	130290119	2	3	102	1	0	0	0	0	0	0	0	1	3735	639	23	4		4	COL6A6	3	130290119	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1051040	130290119	67732311	376	99589											
COL6A6	131873	broad.mit.edu	37	chr3	130361590	130361590	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataaaacttttaaaagttatCactttctgagggcaatgttg	7	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130361590	G	G	130361590	1	3	102	0	1	0	0	0	0	0	0	0	3735	841	29	4		4	COL6A6	3	130361590	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	71471	130361590	67660840	377	99590											
PIK3R4	30849	broad.mit.edu	37	chr3	130427168	130427168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcttgtttggttttaaCaagatcaacttgtctcccag	8	8	3	1	rs151220675		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130427168	A	A	130427168	3	1	102	1	0	0	0	0	1	0	0	0	12016	478	17	3	1620	3	PIK3R4	3	130427168	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	65578	130427168	67595262	378	99591											
PIK3R4	30849	broad.mit.edu	37	chr3	130435261	130435261	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagagcaacttcttcagAagctgtgctatggcaggatc	12	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130435261	C	C	130435261	2	2	102	1	0	0	0	0	0	0	0	1	12016	233	9	5		5	PIK3R4	3	130435261	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	8093	130435261	67587169	379	99592											
ACPP	55	broad.mit.edu	37	chr3	132075604	132075604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatgctacctggctgcaGccccagctgtcctctggaga	10	16	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132075604	T	T	132075604	3	4	102	1	0	0	0	0	1	0	0	0	167	971	34	3	1081	3	ACPP	3	132075604	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1640343	132075604	65946826	380	99593											
NPHP3	27031	broad.mit.edu	37	chr3	132407565	132407565	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggatggtccgcaccataAgcattttctgagatttccaa	8	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132407565	T	T	132407565	2	4	102	1	0	0	0	0	0	0	0	1	10675	59	3	5		5	NPHP3	3	132407565	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	331961	132407565	65614865	381	99594											
IL20RB	53833	broad.mit.edu	37	chr3	136701172	136701172	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctggagcatcctgaagcAtccctttaatagaaactcaa	7	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136701172	G	G	136701172	3	3	102	1	0	0	0	0	1	0	0	0	7739	217	8	5	396	5	IL20RB	3	136701172	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	4293607	136701172	61321258	382	99595											
CLSTN2	64084	broad.mit.edu	37	chr3	140265370	140265370	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcaggaggagaagtcacCaaaccacagtttgctcagtt	9	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140265370	A	A	140265370	2	1	102	1	0	0	0	0	0	0	0	1	3594	581	21	2		2	CLSTN2	3	140265370	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	3564198	140265370	57757060	383	99596											
ZIC1	7545	broad.mit.edu	37	chr3	147128064	147128064	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaccccagttcgcacgaGctggcttcggccggccagac	11	17	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147128064	C	C	147128064	3	2	102	1	0	0	0	0	1	0	0	0	17804	962	34	4	167	4	ZIC1	3	147128064	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	6862694	147128064	50894366	384	99597											
ZIC1	7545	broad.mit.edu	37	chr3	147128846	147128846	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggcaaggtcttcgcgcgctCcgagaatttaaagatccaca	10	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147128846	G	G	147128846	3	3	102	1	0	0	0	0	1	0	0	0	17804	855	30	4	949	4	ZIC1	3	147128846	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	782	147128846	50893584	385	99598											
CPA3	1359	broad.mit.edu	37	chr3	148614351	148614351	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgggcttatgacctgggcAtcaaacacacatttgccttt	8	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148614351	T	T	148614351	3	4	102	1	0	0	0	0	1	0	0	0	3823	217	8	5	1153	5	CPA3	3	148614351	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1485505	148614351	49408079	386	99599											
MED12L	116931	broad.mit.edu	37	chr3	151073938	151073938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttgtgcttgtaatcctGgcactttgggaggccgaggt	15	8	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151073938	T	T	151073938	1	4	102	0	1	0	0	0	0	0	0	0	9522	1363	47	2		2	MED12L	3	151073938	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2459587	151073938	46948492	387	99600											
IGSF10	285313	broad.mit.edu	37	chr3	151156246	151156246	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaattttggcaggtttcaGtcttaggctaacatgcatca	9	8	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151156246	A	A	151156246	2	1	102	1	0	0	0	0	0	0	0	1	7667	1020	36	4		4	IGSF10	3	151156246	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	82308	151156246	46866184	388	99601											
IGSF10	285313	broad.mit.edu	37	chr3	151162958	151162958	+	Missense_Mutation	SNP	G	T	T													cccaatctgaaacaagagtgGtggcctcggacaggcctgta							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151162958	T	T	151162958	3	4	102	1	0	0	0	0	1	0	0	0	7667	1261	44	3	3120	3	IGSF10	3	151162958	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	6712	151162958	46859472	389	99602	431	2									
IGSF10	285313	broad.mit.edu	37	chr3	151162966	151162966	+	Silent	SNP	G	T	T													gaaacaagagtggtggcctcGgacaggcctgtagtagccaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151162966	T	T	151162966	2	4	102	1	0	0	0	0	0	0	0	1	7667	1103	39	1		1	IGSF10	3	151162966	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	8	151162966	46859464	390	99603	431	2									
MME	4311	broad.mit.edu	37	chr3	154802043	154802044	+	Missense_Mutation	DNP	CA	AG	AG													cgatggactccactggagatCagcctctcggtccttgtcct							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	154802044	AG	AG	154802043	3	1	102	1	0	0	0	0	1	0	0	0	9738	816	29	3	89	3	MME	3	154802043	Missense_Mutation	DNP	CA	TCGA-38-4631-01A-01D-1753-08	3639077	154802043	43220387	391	99604											
KCNAB1	7881	broad.mit.edu	37	chr3	156009835	156009835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcacggtcgctatcatcGcgcgcagcctggggacgttc	13	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156009835	T	T	156009835	1	4	102	0	1	0	0	0	0	0	0	0	8079	1087	38	3		3	KCNAB1	3	156009835	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1207792	156009835	42012595	392	99605											
MFSD1	64747	broad.mit.edu	37	chr3	158522150	158522150	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgctgcccttcagactcAagttaaacgagtaagttgat	8	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158522150	T	T	158522150	3	4	102	1	0	0	0	0	1	0	0	0	9620	131	5	5	359	5	MFSD1	3	158522150	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	2512315	158522150	39500280	393	99606											
SI	6476	broad.mit.edu	37	chr3	164737500	164737500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatatattctgatggcaggcGagtcgatatttgaatgaact	10	5	1	3	rs138397431	byFrequency	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164737500	A	A	164737500	3	1	102	1	0	0	0	0	1	0	0	0	14410	1058	37	4	2254	4	SI	3	164737500	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	6215350	164737500	33284930	394	99607											
SERPINI2	5276	broad.mit.edu	37	chr3	167183195	167183195	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaaaataacctggaataGacaaaataaaatatcaaata	4	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167183195	T	T	167183195	1	4	102	0	1	0	0	0	0	0	0	0	14232	957	33	3		3	SERPINI2	3	167183195	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2445695	167183195	30839235	395	99608											
FNDC3B	64778	broad.mit.edu	37	chr3	172065095	172065095	+	Missense_Mutation	SNP	A	C	C													tcatttatcatgggacagacAcccgttttgaaataagagac							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172065095	C	C	172065095	3	2	102	1	0	0	0	0	1	0	0	0	6028	159	6	5	2536	5	FNDC3B	3	172065095	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	4881900	172065095	25957335	396	99609	432	2									
FNDC3B	64778	broad.mit.edu	37	chr3	172065099	172065099	+	Missense_Mutation	SNP	G	T	T													ttatcatgggacagacacccGttttgaaataagagacctgt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172065099	T	T	172065099	3	4	102	1	0	0	0	0	1	0	0	0	6028	1145	40	3	2540	3	FNDC3B	3	172065099	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4	172065099	25957331	397	99610	432	2									
TBL1XR1	79718	broad.mit.edu	37	chr3	176750982	176750982	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatactcccccagccttGctcccacccaacctcccata	4	20	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176750982	A	A	176750982	1	1	102	0	1	0	0	0	0	0	0	0	15762	1334	46	4		4	TBL1XR1	3	176750982	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4685883	176750982	21271448	398	99611											
ACTL6A	86	broad.mit.edu	37	chr3	179291164	179291164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttatattctagttgaagaCtgggatagtttccaagctat	8	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179291164	A	A	179291164	3	1	102	1	0	0	0	0	1	0	0	0	198	564	20	3	299	3	ACTL6A	3	179291164	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2540182	179291164	18731266	399	99612											
PEX5L	51555	broad.mit.edu	37	chr3	179533491	179533491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatttggttagaaaacgGgtacttatttgtaactttta	8	3	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179533491	T	T	179533491	1	4	102	0	1	0	0	0	0	0	0	0	11844	1247	43	2		2	PEX5L	3	179533491	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	242327	179533491	18488939	400	99613											
EIF4G1	1981	broad.mit.edu	37	chr3	184049277	184049277	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggtggagtataccctGggagaggagtcggaagcccc	16	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184049277	C	C	184049277	2	2	102	1	0	0	0	0	0	0	0	1	5078	1335	47	4		4	EIF4G1	3	184049277	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	4515786	184049277	13973153	401	99614											
HRG	3273	broad.mit.edu	37	chr3	186384029	186384029	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattgccaatggcagagctGagttgggagattactcacgg	14	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186384029	T	T	186384029	1	4	102	0	1	0	0	0	0	0	0	0	7421	1305	45	3		3	HRG	3	186384029	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2334752	186384029	11638401	402	99615											
OPA1	4976	broad.mit.edu	37	chr3	193333429	193333429	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatgtttatttggcatgcaGagcatctgattgacacactt	8	8	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193333429	A	A	193333429	1	1	102	0	1	0	0	0	0	0	0	0	10965	957	33	4		4	OPA1	3	193333429	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	6949400	193333429	4689001	403	99616											
ZNF595	152687	broad.mit.edu	37	chr4	59439	59439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagaactacaggaacctGgtctccctgggtgaggataa	13	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59439	T	T	59439	2	4	102	1	0	0	0	0	0	0	0	1	18152	1335	47	2		2	ZNF595	4	59439	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08		59439	191094837	404	99617											
ZNF595	152687	broad.mit.edu	37	chr4	64973	64973	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaggtcacttgatgggaagGaccacttttggactatagct	12	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64973	T	T	64973	1	4	102	0	1	0	0	0	0	0	0	0	18152	1189	41	3		3	ZNF595	4	64973	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5534	64973	191089303	405	99618											
RNF212	285498	broad.mit.edu	37	chr4	1090674	1090674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattgtgtctaataaacgCttctggcccccagttaaaaa	6	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1090674	T	T	1090674	1	4	102	0	1	0	0	0	0	0	0	0	13587	812	28	4		4	RNF212	4	1090674	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1025701	1090674	190063602	406	99619											
WHSC1	7468	broad.mit.edu	37	chr4	1962707	1962707	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggagtcttgagccccgaCactgaggattggtcagcacg	15	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1962707	T	T	1962707	1	4	102	0	1	0	0	0	0	0	0	0	17489	493	17	4		4	WHSC1	4	1962707	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	872033	1962707	189191569	407	99620											
SH3BP2	6452	broad.mit.edu	37	chr4	2826407	2826407	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagatcatccatatcagcAagaagcaccgcacgtggttc	8	12	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2826407	C	C	2826407	3	2	102	1	0	0	0	0	1	0	0	0	14358	131	5	5	576	5	SH3BP2	4	2826407	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	863700	2826407	188327869	408	99621											
CYTL1	54360	broad.mit.edu	37	chr4	5016865	5016865	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttgggttctttctctGgtctcagttcccttagcgct	8	12	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5016865	T	T	5016865	1	4	102	0	1	0	0	0	0	0	0	0	4241	1363	47	2		2	CYTL1	4	5016865	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	2190458	5016865	186137411	409	99622											
STK32B	55351	broad.mit.edu	37	chr4	5448581	5448581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctggacgggcagagtcgGcagggcccgcggtgcaggaa	18	11	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5448581	T	T	5448581	1	4	102	0	1	0	0	0	0	0	0	0	15416	1218	42	3		3	STK32B	4	5448581	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	431716	5448581	185705695	410	99623											
STK32B	55351	broad.mit.edu	37	chr4	5458480	5458480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaatcttaaaatgcggaCggtgccttccaatggctctc	8	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5458480	T	T	5458480	1	4	102	0	1	0	0	0	0	0	0	0	15416	551	19	4		4	STK32B	4	5458480	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	9899	5458480	185695796	411	99624											
HTRA3	94031	broad.mit.edu	37	chr4	8306035	8306035	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccagaggagatcgctcgaGgcatggggcaggcgtgaggt	19	8	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8306035	A	A	8306035	1	1	102	0	1	0	0	0	0	0	0	0	7525	1015	35	4		4	HTRA3	4	8306035	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2847555	8306035	182848241	412	99625											
C4orf23	152992	broad.mit.edu	37	chr4	8467229	8467229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacttcattaaagaagtgGgcttcacctgtgggtttcac	10	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8467229	T	T	8467229	3	4	102	1	0	0	0	0	1	0	0	0	2279	1232	43	2	1465	2	C4orf23	4	8467229	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	161194	8467229	182687047	413	99626											
GPR78	27201	broad.mit.edu	37	chr4	8583019	8583019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggcgctgagcgcagacCagtggctggcagtgggcttc	18	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8583019	A	A	8583019	3	1	102	1	0	0	0	0	1	0	0	0	6775	595	21	2	312	2	GPR78	4	8583019	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	115790	8583019	182571257	414	99627											
GPR78	27201	broad.mit.edu	37	chr4	8589163	8589163	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactggccctgccacagagaTgccactggggacccccagac	11	17	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8589163	A	A	8589163	1	1	102	0	1	0	0	0	0	0	0	0	6775	1479	51	5		5	GPR78	4	8589163	3'UTR	SNP	T	TCGA-38-4631-01A-01D-1753-08	6144	8589163	182565113	415	99628											
SLC2A9	56606	broad.mit.edu	37	chr4	9892342	9892342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgaccaaaccctagtcCagggtaaaagagagagagag	11	8	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9892342	A	A	9892342	1	1	102	0	1	0	0	0	0	0	0	0	14666	609	21	2		2	SLC2A9	4	9892342	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1303179	9892342	181261934	416	99629											
GBA3	57733	broad.mit.edu	37	chr4	22749027	22749027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttagaagaccaaggagGttggttgtcagaggcaatca	13	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22749027	T	T	22749027	3	4	102	1	0	0	0	0	1	0	0	0	6330	1261	44	3	405	3	GBA3	4	22749027	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	12856685	22749027	168405249	417	99630											
SLC34A2	10568	broad.mit.edu	37	chr4	25675965	25675965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctacctggccatcctcGtcggggcaggcatgaccttc	12	15	0	1	rs116219115	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25675965	T	T	25675965	3	4	102	1	0	0	0	0	1	0	0	0	14682	1145	40	3	1302	3	SLC34A2	4	25675965	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2926938	25675965	165478311	418	99631											
CCKAR	886	broad.mit.edu	37	chr4	26483736	26483736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggcctggtcttttgcaGgtaacacccatcgctgtcct	12	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26483736	T	T	26483736	3	4	102	1	0	0	0	0	1	0	0	0	2908	991	35	2	479	2	CCKAR	4	26483736	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	807771	26483736	164670540	419	99632											
ARAP2	116984	broad.mit.edu	37	chr4	36212457	36212457	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttataaataactaataacaGaaacataaggccaggaaaat	5	5	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36212457	A	A	36212457	1	1	102	0	1	0	0	0	0	0	0	0	841	957	33	4		4	ARAP2	4	36212457	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	9728721	36212457	154941819	420	99633											
ATP8A1	10396	broad.mit.edu	37	chr4	42588329	42588329	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaatactctatgacacagTggattctgtgtttttataaa	7	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42588329	A	A	42588329	1	1	102	0	1	0	0	0	0	0	0	0	1196	1711	59	5		5	ATP8A1	4	42588329	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	6375872	42588329	148565947	421	99634											
GRXCR1	389207	broad.mit.edu	37	chr4	42895638	42895638	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgagtgctggccaggctCtatttaacaatttgaccaaa	9	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42895638	T	T	42895638	2	4	102	1	0	0	0	0	0	0	0	1	6878	912	32	4		4	GRXCR1	4	42895638	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	307309	42895638	148258638	422	99635											
GABRA2	2555	broad.mit.edu	37	chr4	46252268	46252268	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattagtcagactgtacataGcaaaacaaaccaaatttaat	4	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46252268	C	C	46252268	1	2	102	0	1	0	0	0	0	0	0	0	6221	986	34	4		4	GABRA2	4	46252268	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	3356630	46252268	144902008	423	99636											
GABRA2	2555	broad.mit.edu	37	chr4	46252334	46252334	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggtctcaattcaaggactGacccctaatacaggttctct	8	11	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46252334	T	T	46252334	2	4	102	1	0	0	0	0	0	0	0	1	6221	1277	45	3		3	GABRA2	4	46252334	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	66	46252334	144901942	424	99637											
ATP10D	57205	broad.mit.edu	37	chr4	47517714	47517714	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaatgggacctttgctaagGactatgtatgtatcattgag	11	5	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47517714	T	T	47517714	1	4	102	0	1	0	0	0	0	0	0	0	1122	1189	41	3		3	ATP10D	4	47517714	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1265380	47517714	143636562	425	99638											
ATP10D	57205	broad.mit.edu	37	chr4	47517786	47517786	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaccaggacccttttGtggtggtgttggtgttgttg	17	5	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47517786	C	C	47517786	1	2	102	0	1	0	0	0	0	0	0	0	1122	1392	48	4		4	ATP10D	4	47517786	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	72	47517786	143636490	426	99639											
ATP10D	57205	broad.mit.edu	37	chr4	47556860	47556860	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggaaactttgtacattAtcgactttttcattgcattg	6	7	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47556860	G	G	47556860	3	3	102	1	0	0	0	0	1	0	0	0	1122	449	16	5	1791	5	ATP10D	4	47556860	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	39074	47556860	143597416	427	99640											
ATP10D	57205	broad.mit.edu	37	chr4	47559954	47559954	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaaacagagaaacaacacGgtgatgcaggcctcctgaat	10	10	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47559954	C	C	47559954	3	2	102	1	0	0	0	0	1	0	0	0	1122	1116	39	4	2140	4	ATP10D	4	47559954	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3094	47559954	143594322	428	99641											
CORIN	10699	broad.mit.edu	37	chr4	47746352	47746352	+	Intron	DEL	C	-	-													tgtacacttattatttatatCcattcctgtataaatggcat							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47746352	-	-	47746352	6	5	102	0	1	1	0	1	0	0	0	0	3784	870	30	0		0	CORIN	4	47746352	Intron	DEL	C	TCGA-38-4631-01A-01D-1753-08	186398	47746352	143407924	429	99642											
FRYL	285527	broad.mit.edu	37	chr4	48516978	48516978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaactgaaacagaggggCactctttggaaggaataggg	14	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48516978	A	A	48516978	1	1	102	0	1	0	0	0	0	0	0	0	6124	725	25	3		3	FRYL	4	48516978	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	770626	48516978	142637298	430	99643											
LNX1	84708	broad.mit.edu	37	chr4	54439849	54439849	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgggtgcagtgctccctGaatgggcaggtcaccagtag	14	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54439849	C	C	54439849	3	2	102	1	0	0	0	0	1	0	0	0	8939	1281	45	4	2001	4	LNX1	4	54439849	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	5922871	54439849	136714427	431	99644											
PDGFRA	5156	broad.mit.edu	37	chr4	54953672	54953672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttcgacgtgatgttaggCactcagctgctctacaaatt	8	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54953672	A	A	54953672	1	1	102	0	1	0	0	0	0	0	0	0	11755	725	25	3		3	PDGFRA	4	54953672	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	513823	54953672	136200604	432	99645											
KIT	3815	broad.mit.edu	37	chr4	55593517	55593517	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttatttgttctctctccaGagtgctctaatgactgagac	7	9	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55593517	C	C	55593517	1	2	102	0	1	0	0	0	0	0	0	0	8400	957	33	4		4	KIT	4	55593517	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	639845	55593517	135560759	433	99646											
KDR	3791	broad.mit.edu	37	chr4	55977014	55977014	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcatttcaagtgaaacGtcaaagaccttgagggtctg	9	7	4	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55977014	T	T	55977014	1	4	102	0	1	0	0	0	0	0	0	0	8209	1160	40	3		3	KDR	4	55977014	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	383497	55977014	135177262	434	99647											
KDR	3791	broad.mit.edu	37	chr4	55981334	55981335	+	Intron	DNP	CC	AA	AA													gttttattcattgcatttgaCccttcctaaaggatccttaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55981335	AA	AA	55981334	1	1	102	0	1	0	0	0	0	0	0	0	8209	522	18	3		3	KDR	4	55981334	Intron	DNP	CC	TCGA-38-4631-01A-01D-1753-08	4320	55981334	135172942	435	99648											
KDR	3791	broad.mit.edu	37	chr4	55981512	55981512	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcaccacagttttgtttTtgttctcagtaatgtacacg	7	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55981512	C	C	55981512	3	2	102	1	0	0	0	0	1	0	0	0	8209	1841	64	5	3753	5	KDR	4	55981512	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	178	55981512	135172764	436	99649											
KIAA1211	57482	broad.mit.edu	37	chr4	57180084	57180084	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagctatccctgaacttgAgaatacctgcttccaggtgt	8	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57180084	T	T	57180084	1	4	102	0	1	0	0	0	0	0	0	0	8285	319	11	5		5	KIAA1211	4	57180084	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1198572	57180084	133974192	437	99650											
LPHN3	23284	broad.mit.edu	37	chr4	62641575	62641575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctcggccatggcggtGggttaccggtgaagacgaat	14	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62641575	T	T	62641575	1	4	102	0	1	0	0	0	0	0	0	0	9004	1363	47	2		2	LPHN3	4	62641575	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5461491	62641575	128512701	438	99651											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68964603	68964603	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactgtgacctggatacttAccctcaacaacaaaatgagt	7	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68964603	G	G	68964603	5	3	102	1	0	0	0	0	0	0	1	0	16366	405	14	5	1187	5	TMPRSS11F	4	68964603	Splice_Site	SNP	A	TCGA-38-4631-01A-01D-1753-08	6323028	68964603	122189673	439	99652											
UGT2B28	54490	broad.mit.edu	37	chr4	70148413	70148413	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttggttttattttgttgGcttcgaagtttcagtagaaa	10	4	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70148413	T	T	70148413	1	4	102	0	1	0	0	0	0	0	0	0	17086	1218	42	3		3	UGT2B28	4	70148413	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1183810	70148413	121005863	440	99653											
UGT2B28	54490	broad.mit.edu	37	chr4	70156417	70156418	+	Missense_Mutation	DNP	CC	AA	AA													ttccattgttttgggatcaaCctgataacattgctcacatg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70156418	AA	AA	70156417	3	1	102	1	0	0	0	0	1	0	0	0	17086	507	18	3	1216	3	UGT2B28	4	70156417	Missense_Mutation	DNP	CC	TCGA-38-4631-01A-01D-1753-08	8004	70156417	120997859	441	99654											
C4orf35	85438	broad.mit.edu	37	chr4	71200971	71200971	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacaaactgacagctaaaaAggaaaaactcaaatcagaag	6	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71200971	T	T	71200971	3	4	102	1	0	0	0	0	1	0	0	0	2288	72	3	5	217	5	C4orf35	4	71200971	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1044554	71200971	119953305	442	99655											
CCDC158	339965	broad.mit.edu	37	chr4	77283255	77283255	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagactcttattttttagtAggatttgtgctgaagcaaca	8	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77283255	G	G	77283255	1	3	102	0	1	0	0	0	0	0	0	0	2817	435	15	5		5	CCDC158	4	77283255	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	6082284	77283255	113871021	443	99656											
ANKRD56	345079	broad.mit.edu	37	chr4	77817998	77817998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttccaagggcagctggagGaagttgtctggcagcaccga	16	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77817998	T	T	77817998	3	4	102	1	0	0	0	0	1	0	0	0	682	1165	41	3	1380	3	ANKRD56	4	77817998	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	534743	77817998	113336278	444	99657											
FRAS1	80144	broad.mit.edu	37	chr4	79399131	79399131	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcattatcaacgataccgagGatgaacccacattagagttt	7	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79399131	C	C	79399131	3	2	102	1	0	0	0	0	1	0	0	0	6102	1174	41	4	8307	4	FRAS1	4	79399131	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1581133	79399131	111755145	445	99658											
ANXA3	306	broad.mit.edu	37	chr4	79503387	79503387	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttgagcatctcatggtGgccctagtgactccaccagc	9	14	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79503387	T	T	79503387	2	4	102	1	0	0	0	0	0	0	0	1	719	1335	47	2		2	ANXA3	4	79503387	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	104256	79503387	111650889	446	99659											
GK2	2712	broad.mit.edu	37	chr4	80328582	80328582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgcagcacattggtccCccaaacacccagatattggc	7	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80328582	T	T	80328582	3	4	102	1	0	0	0	0	1	0	0	0	6485	623	22	4	892	4	GK2	4	80328582	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	825195	80328582	110825694	447	99660											
ARHGAP24	83478	broad.mit.edu	37	chr4	86844845	86844845	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatcatgaaagctacctcCtcatggcaagcacccagaat	6	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86844845	T	T	86844845	3	4	102	1	0	0	0	0	1	0	0	0	875	681	24	4	323	4	ARHGAP24	4	86844845	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	6516263	86844845	104309431	448	99661											
MAPK10	5602	broad.mit.edu	37	chr4	87028474	87028474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagcttcttaatggccaCatttctgtcaaggacagcat	9	10	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87028474	A	A	87028474	3	1	102	1	0	0	0	0	1	0	0	0	9364	478	17	3	1171	3	MAPK10	4	87028474	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	183629	87028474	104125802	449	99662											
DSPP	1834	broad.mit.edu	37	chr4	88533716	88533716	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcatgatggaatacatggGaaagaagaaaacatcacagc	11	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88533716	T	T	88533716	2	4	102	1	0	0	0	0	0	0	0	1	4822	1161	41	3		3	DSPP	4	88533716	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1505242	88533716	102620560	450	99663											
MEPE	56955	broad.mit.edu	37	chr4	88766498	88766498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataatggggccagtgactGcgattaaactcctgggggaa	13	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88766498	T	T	88766498	3	4	102	1	0	0	0	0	1	0	0	0	9571	1319	46	3	488	3	MEPE	4	88766498	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	232782	88766498	102387778	451	99664											
FAM190A	401145	broad.mit.edu	37	chr4	91549444	91549444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaatgaagtctgcagacGtggttagaccctgctctgtc	11	10	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91549444	T	T	91549444	1	4	102	0	1	0	0	0	0	0	0	0	5568	1160	40	3		3	FAM190A	4	91549444	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2782946	91549444	99604832	452	99665											
CENPE	1062	broad.mit.edu	37	chr4	104095862	104095862	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttaaaagtatgctttTagtttagttttacatttctg	5	4	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104095862	C	C	104095862	1	2	102	0	1	0	0	0	0	0	0	0	3260	1769	61	5		5	CENPE	4	104095862	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	12546418	104095862	87058414	453	99666											
AGXT2L1	64850	broad.mit.edu	37	chr4	109667837	109667837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcctttttcagagggatGggaggaagtcaagcaagctt	12	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109667837	T	T	109667837	1	4	102	0	1	0	0	0	0	0	0	0	406	1363	47	2		2	AGXT2L1	4	109667837	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5571975	109667837	81486439	454	99667											
COL25A1	84570	broad.mit.edu	37	chr4	109895542	109895542	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctaggtccctgatcacctTgttctccctgtagaatagaa	7	13	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109895542	A	A	109895542	3	1	102	1	0	0	0	0	1	0	0	0	3716	1812	63	5	1699	5	COL25A1	4	109895542	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	227705	109895542	81258734	455	99668											
COL25A1	84570	broad.mit.edu	37	chr4	110223216	110223216	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcttcgcttcccaccctcTacacctcaaataatcctaaa	3	17	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110223216	C	C	110223216	1	2	102	0	1	0	0	0	0	0	0	0	3716	1537	53	5		5	COL25A1	4	110223216	5'UTR	SNP	T	TCGA-38-4631-01A-01D-1753-08	327674	110223216	80931060	456	99669											
SEC24B	10427	broad.mit.edu	37	chr4	110452656	110452656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcatcccaacttatacaGgatagacagattgacagatg	8	8	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110452656	T	T	110452656	3	4	102	1	0	0	0	0	1	0	0	0	14108	1000	35	2	3446	2	SEC24B	4	110452656	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	229440	110452656	80701620	457	99670											
ALPK1	80216	broad.mit.edu	37	chr4	113332985	113332985	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccacgctgttcctccaggcGtccctgagggcctccatcct	9	18	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113332985	C	C	113332985	2	2	102	1	0	0	0	0	0	0	0	1	544	1132	40	4		4	ALPK1	4	113332985	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	2880329	113332985	77821291	458	99671											
ALPK1	80216	broad.mit.edu	37	chr4	113353771	113353771	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaatagttcccccctcaGgaagcagctgtgttggggca	11	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113353771	A	A	113353771	1	1	102	0	1	0	0	0	0	0	0	0	544	1015	35	4		4	ALPK1	4	113353771	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	20786	113353771	77800505	459	99672											
PRDM5	11107	broad.mit.edu	37	chr4	121774658	121774658	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgccgtgggttggtagcaTccaaaatgtacaaaacttct	10	8	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121774658	A	A	121774658	3	1	102	1	0	0	0	0	1	0	0	0	12566	1435	50	5	1733	5	PRDM5	4	121774658	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	8420887	121774658	69379618	460	99673											
PRDM5	11107	broad.mit.edu	37	chr4	121828725	121828725	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttcaccctgagtagcaatGattatattgaacaaggatta	7	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121828725	C	C	121828725	1	2	102	0	1	0	0	0	0	0	0	0	12566	1305	45	4		4	PRDM5	4	121828725	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	54067	121828725	69325551	461	99674											
TNIP3	79931	broad.mit.edu	37	chr4	122063061	122063061	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccgcagttacagggtggGcaatacatctgaggagaaca	13	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122063061	T	T	122063061	4	4	102	1	0	0	0	0	0	1	0	0	16439	1195	42	3	194	3	TNIP3	4	122063061	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	234336	122063061	69091215	462	99675											
FGF2	2247	broad.mit.edu	37	chr4	123748592	123748592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctgcaccctcctccCggatcttcactgcgacccta	6	20	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123748592	A	A	123748592	1	1	102	0	1	0	0	0	0	0	0	0	5905	667	23	1		1	FGF2	4	123748592	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1685531	123748592	67405684	463	99676											
FAT4	79633	broad.mit.edu	37	chr4	126336650	126336650	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatataatacaagtgttcGcagcagatggagatgaaggc	12	6	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126336650	C	C	126336650	3	2	102	1	0	0	0	0	1	0	0	0	5749	1087	38	4	6550	4	FAT4	4	126336650	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2588058	126336650	64817626	464	99677											
FAT4	79633	broad.mit.edu	37	chr4	126369620	126369620	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttctcttttataggttcCtttgtctttgcggttacagt	7	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126369620	T	T	126369620	2	4	102	1	0	0	0	0	0	0	0	1	5749	668	24	4		4	FAT4	4	126369620	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	32970	126369620	64784656	465	99678											
FAT4	79633	broad.mit.edu	37	chr4	126370085	126370085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atacaaaaatatgttgtatgGatagaggccagagacggtgg	13	4	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126370085	T	T	126370085	3	4	102	1	0	0	0	0	1	0	0	0	5749	1183	41	3	7948	3	FAT4	4	126370085	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	465	126370085	64784191	466	99679											
FAT4	79633	broad.mit.edu	37	chr4	126373104	126373104	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaggatccagatgtgttaGacagcttccactgctccctt	8	13	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126373104	A	A	126373104	3	1	102	1	0	0	0	0	1	0	0	0	5749	942	33	4	10967	4	FAT4	4	126373104	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3019	126373104	64781172	467	99680											
USP38	84640	broad.mit.edu	37	chr4	144135716	144135716	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcattactattcttatgccAggaatatcacaagtacagac	7	9	2	1	rs140701873		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144135716	T	T	144135716	3	4	102	1	0	0	0	0	1	0	0	0	17196	179	7	5	2621	5	USP38	4	144135716	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	17762612	144135716	47018560	468	99681											
GAB1	2549	broad.mit.edu	37	chr4	144346366	144346366	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataaatctgaagaggacctgGgagaagcttctgctggcagc	13	8	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144346366	C	C	144346366	1	2	102	0	1	0	0	0	0	0	0	0	6208	1247	43	4		4	GAB1	4	144346366	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	210650	144346366	46807910	469	99682											
MAP9	79884	broad.mit.edu	37	chr4	156296262	156296262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaacaatgcttgattaaCgactgctttcaaacttaggt	6	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156296262	A	A	156296262	1	1	102	0	1	0	0	0	0	0	0	0	9362	551	19	3		3	MAP9	4	156296262	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	11949896	156296262	34858014	470	99683											
RAPGEF2	9693	broad.mit.edu	37	chr4	160264211	160264211	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacgaaaaactatttcaagAtctccaagacctgtttgatc	5	9	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160264211	T	T	160264211	3	4	102	1	0	0	0	0	1	0	0	0	13152	333	12	5	2574	5	RAPGEF2	4	160264211	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3967949	160264211	30890065	471	99684											
NPY5R	4889	broad.mit.edu	37	chr4	164271759	164271759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagtggatgtttggcaaaGtcatgtgccatattatgcct	10	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164271759	T	T	164271759	3	4	102	1	0	0	0	0	1	0	0	0	10705	1029	36	3	336	3	NPY5R	4	164271759	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4007548	164271759	26882517	472	99685											
MARCH1	55016	broad.mit.edu	37	chr4	165110578	165110578	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgttggaaaattctgaTttgaagaattctgatattga	9	2	2	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165110578	C	C	165110578	1	2	102	0	1	0	0	0	0	0	0	0	9390	1508	52	5		5	MARCH1	4	165110578	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	838819	165110578	26043698	473	99686											
MARCH1	55016	broad.mit.edu	37	chr4	165118894	165118894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtctgcagaggctctcGtgccagccgaattcaatcaa	9	13	5	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165118894	T	T	165118894	1	4	102	0	1	0	0	0	0	0	0	0	9390	1160	40	3		3	MARCH1	4	165118894	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	8316	165118894	26035382	474	99687											
GALNT7	51809	broad.mit.edu	37	chr4	174169425	174169425	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actttgaacccaaagaacctGagcctcctggagtggttggt	11	10	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174169425	C	C	174169425	3	2	102	1	0	0	0	0	1	0	0	0	6280	1291	45	4	427	4	GALNT7	4	174169425	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	9050531	174169425	16984851	475	99688											
MORF4	10934	broad.mit.edu	37	chr4	174537858	174537858	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtttctgcaaattggtGtccacatatttgagtactct	8	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174537858	C	C	174537858	1	2	102	0	1	0	0	0	0	0	0	0	9799	1392	48	4		4	MORF4	4	174537858	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	368433	174537858	16616418	476	99689											
FBXO8	26269	broad.mit.edu	37	chr4	175160386	175160386	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttggttaacttttcttcaTtaaaaaaatggtaagaaaaa	5	4	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175160386	A	A	175160386	1	1	102	0	1	0	0	0	0	0	0	0	5818	1508	52	5		5	FBXO8	4	175160386	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	622528	175160386	15993890	477	99690											
ADAM29	11086	broad.mit.edu	37	chr4	175898483	175898483	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaagtgaaagatggaacaGagtgtgggatagatcatata	14	2	1	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175898483	T	T	175898483	4	4	102	1	0	0	0	0	0	1	0	0	247	943	33	3	1809	3	ADAM29	4	175898483	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	738097	175898483	15255793	478	99691											
ODZ3	55714	broad.mit.edu	37	chr4	183601430	183601430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatgtccccgaaattgcCatggaaatggagaatgcgtt	12	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183601430	A	A	183601430	3	1	102	1	0	0	0	0	1	0	0	0	10931	594	21	2	1597	2	ODZ3	4	183601430	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	7702947	183601430	7552846	479	99692											
CASP3	836	broad.mit.edu	37	chr4	185552920	185552920	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcactcagttagacattaccTgaataatgaaaagtttgggt	8	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185552920	A	A	185552920	3	1	102	1	0	0	0	0	1	0	0	0	2698	1594	55	5	363	5	CASP3	4	185552920	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1951490	185552920	5601356	480	99693											
SORBS2	8470	broad.mit.edu	37	chr4	186541230	186541230	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taactacctctttttctggaGttcctcttctttcccttggt	5	12	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186541230	A	A	186541230	3	1	102	1	0	0	0	0	1	0	0	0	15042	1029	36	4	755	4	SORBS2	4	186541230	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	988310	186541230	4613046	481	99694											
MTNR1A	4543	broad.mit.edu	37	chr4	187454826	187454826	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcgtgtccatctcaccCggaacgtggtgcttttttaa	10	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187454826	A	A	187454826	1	1	102	0	1	0	0	0	0	0	0	0	10045	667	23	1		1	MTNR1A	4	187454826	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	913596	187454826	3699450	482	99695											
TRIML1	339976	broad.mit.edu	37	chr4	189068508	189068508	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccctctcaccatctgctcActgaacagccacgtctgagg	8	16	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189068508	C	C	189068508	2	2	102	1	0	0	0	0	0	0	0	1	16675	146	6	5		5	TRIML1	4	189068508	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	1613682	189068508	2085768	483	99696											
EXOC3	11336	broad.mit.edu	37	chr5	457103	457103	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctgagctgcttgacacGtacatgtccacgctcactgt	9	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	457103	T	T	457103	2	4	102	1	0	0	0	0	0	0	0	1	5345	1132	40	3		3	EXOC3	5	457103	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08		457103	180458157	484	99697											
KIAA0947	23379	broad.mit.edu	37	chr5	5461256	5461256	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagatactcaagggttcacTttaggagaatcacctgaatc	9	8	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5461256	C	C	5461256	2	2	102	1	0	0	0	0	0	0	0	1	8272	1596	56	5		5	KIAA0947	5	5461256	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	5004153	5461256	175454004	485	99698											
FAM173B	134145	broad.mit.edu	37	chr5	10227695	10227695	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaatgtgggaaagggaacCggcaagcaataactcgtgca	12	9	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10227695	G	G	10227695	3	3	102	1	0	0	0	0	1	0	0	0	5539	652	23	4	145	4	FAM173B	5	10227695	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4766439	10227695	170687565	486	99699											
CTNND2	1501	broad.mit.edu	37	chr5	11384964	11384964	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtggggggcgaggtcacGcggatcggggacaggccggc	22	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11384964	T	T	11384964	2	4	102	1	0	0	0	0	0	0	0	1	4054	1074	38	3		3	CTNND2	5	11384964	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1157269	11384964	169530296	487	99700											
DNAH5	1767	broad.mit.edu	37	chr5	13770853	13770853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtataagaacatcacaCttacctgttggccagggtcc	8	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13770853	A	A	13770853	1	1	102	0	1	0	0	0	0	0	0	0	4644	580	20	3		3	DNAH5	5	13770853	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2385889	13770853	167144407	488	99701											
FBXL7	23194	broad.mit.edu	37	chr5	15616169	15616169	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagcccagaagaatgtgGctaccagcgaaggtaggcag	13	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15616169	C	C	15616169	3	2	102	1	0	0	0	0	1	0	0	0	5781	1203	42	4	121	4	FBXL7	5	15616169	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1845316	15616169	165299091	489	99702											
CDH18	1016	broad.mit.edu	37	chr5	19473591	19473591	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatctatgctttccaggGtggatgatgtctggtgtctg	13	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473591	T	T	19473591	3	4	102	1	0	0	0	0	1	0	0	0	3133	1261	44	3	259	3	CDH18	5	19473591	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3857422	19473591	161441669	490	99703											
PRDM9	56979	broad.mit.edu	37	chr5	23521077	23521077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaacatgttgcaagccGtaaagaactaaagaaattcg	8	6	0	3	rs145670659	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23521077	T	T	23521077	1	4	102	0	1	0	0	0	0	0	0	0	12569	1160	40	3		3	PRDM9	5	23521077	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4047486	23521077	157394183	491	99704											
PDZD2	23037	broad.mit.edu	37	chr5	31983824	31983824	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtttgtttgtttttGcagcccagcccatgcgggaa	13	8	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31983824	C	C	31983824	1	2	102	0	1	0	0	0	0	0	0	0	11795	1334	46	4		4	PDZD2	5	31983824	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	8462747	31983824	148931436	492	99705											
ADAMTS12	81792	broad.mit.edu	37	chr5	33751701	33751701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttaaccaattctacataCctactaaaaacaaagtgaaa	2	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33751701	A	A	33751701	1	1	102	0	1	0	0	0	0	0	0	0	257	522	18	3		3	ADAMTS12	5	33751701	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1767877	33751701	147163559	493	99706											
AGXT2	64902	broad.mit.edu	37	chr5	34998786	34998786	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttgaacatacgtggcaaAttcttgagacttgtggtttt	9	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34998786	C	C	34998786	1	2	102	0	1	0	0	0	0	0	0	0	405	116	4	5		5	AGXT2	5	34998786	3'UTR	SNP	A	TCGA-38-4631-01A-01D-1753-08	1247085	34998786	145916474	494	99707											
SPEF2	79925	broad.mit.edu	37	chr5	35792573	35792573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctatgttgtttgagttGtaaagctttaagcattctta	8	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35792573	T	T	35792573	1	4	102	0	1	0	0	0	0	0	0	0	15153	1392	48	3		3	SPEF2	5	35792573	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	793787	35792573	145122687	495	99708											
EGFLAM	133584	broad.mit.edu	37	chr5	38338879	38338879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagccgggacatcccgaCcacggtgagtctttccatcc	9	16	2	1	rs74624102	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38338879	A	A	38338879	3	1	102	1	0	0	0	0	1	0	0	0	5006	507	18	3	297	3	EGFLAM	5	38338879	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2546306	38338879	142576381	496	99709											
LIFR	3977	broad.mit.edu	37	chr5	38493779	38493779	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaggcatggttccgaccgaGacgagttacaccacttaatg	10	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38493779	T	T	38493779	3	4	102	1	0	0	0	0	1	0	0	0	8852	942	33	3	1327	3	LIFR	5	38493779	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	154900	38493779	142421481	497	99710											
C7	730	broad.mit.edu	37	chr5	40950059	40950059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggttggcattttgtcGttaaattttcaagtcatgga	9	7	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40950059	T	T	40950059	3	4	102	1	0	0	0	0	1	0	0	0	2400	1145	40	3	1070	3	C7	5	40950059	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2456280	40950059	139965201	498	99711											
PARP8	79668	broad.mit.edu	37	chr5	50111265	50111265	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattcctttttcttttgtaGcctaccgtatgtgaacggga	9	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50111265	T	T	50111265	5	4	102	1	0	0	0	0	0	0	1	0	11559	985	34	3	1633	3	PARP8	5	50111265	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	9161206	50111265	130803995	499	99712											
ITGA2	3673	broad.mit.edu	37	chr5	52386271	52386271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaggtgcatcagaggacGtgggcagccaagggggtcag	18	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52386271	T	T	52386271	1	4	102	0	1	0	0	0	0	0	0	0	7945	1160	40	3		3	ITGA2	5	52386271	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2275006	52386271	128528989	500	99713											
FST	10468	broad.mit.edu	37	chr5	52781807	52781807	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggaagacaccgaggaagagGaggaagatgaagaccaggac	16	7	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52781807	T	T	52781807	4	4	102	1	0	0	0	0	0	1	0	0	6136	1175	41	3	1007	3	FST	5	52781807	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	395536	52781807	128133453	501	99714											
DHX29	54505	broad.mit.edu	37	chr5	54567931	54567931	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacttattttcttttgttcTtccagtatcaattacaaata	2	7	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54567931	A	A	54567931	4	1	102	1	0	0	0	0	0	1	0	0	4543	1617	56	5	1301	5	DHX29	5	54567931	Nonsense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1786124	54567931	126347329	502	99715											
DDX4	54514	broad.mit.edu	37	chr5	55034874	55034874	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaggtaataacatttaAagtttagttattaaatgcta	7	2	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55034874	T	T	55034874	1	4	102	0	1	0	0	0	0	0	0	0	4393	29	1	5		5	DDX4	5	55034874	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	466943	55034874	125880386	503	99716											
PDE4D	5144	broad.mit.edu	37	chr5	58273027	58273027	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagctacttacgatgtcaatGaccattttccttaaagattg	6	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58273027	T	T	58273027	2	4	102	1	0	0	0	0	0	0	0	1	11736	1277	45	3		3	PDE4D	5	58273027	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3238153	58273027	122642233	504	99717											
NLN	57486	broad.mit.edu	37	chr5	65029547	65029547	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcactaaaatctaggacAcaggtgcttttttttttttg	9	6	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65029547	T	T	65029547	1	4	102	0	1	0	0	0	0	0	0	0	10562	174	6	5		5	NLN	5	65029547	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	6756520	65029547	115885713	505	99718											
EDIL3	10085	broad.mit.edu	37	chr5	83360489	83360489	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttttgttttctttaaataGaatacagaaatagttaattt	4	3	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83360489	T	T	83360489	1	4	102	0	1	0	0	0	0	0	0	0	4955	957	33	3		3	EDIL3	5	83360489	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	18330942	83360489	97554771	506	99719											
FAM81B	153643	broad.mit.edu	37	chr5	94727409	94727409	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgggcaaaggatgtgaacaGacacttctcaaaagaagaca	11	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94727409	C	C	94727409	1	2	102	0	1	0	0	0	0	0	0	0	5682	957	33	4		4	FAM81B	5	94727409	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	11366920	94727409	86187851	507	99720											
ST8SIA4	7903	broad.mit.edu	37	chr5	100151993	100151993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaatattttagattttaTctcataataaaagcagataa	4	4	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100151993	A	A	100151993	1	1	102	0	1	0	0	0	0	0	0	0	15352	1450	50	5		5	ST8SIA4	5	100151993	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	5424584	100151993	80763267	508	99721											
PAM	5066	broad.mit.edu	37	chr5	102260668	102260668	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattttcttcaggttttgtGatgaaggaacctgtacagat	9	5	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102260668	T	T	102260668	3	4	102	1	0	0	0	0	1	0	0	0	11506	1290	45	3	382	3	PAM	5	102260668	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2108675	102260668	78654592	509	99722											
MAN2A1	4124	broad.mit.edu	37	chr5	109155851	109155851	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaaattgtcatatacAtagaaccagatgcaacatgc	5	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109155851	G	G	109155851	1	3	102	0	1	0	0	0	0	0	0	0	9306	232	8	5		5	MAN2A1	5	109155851	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	6895183	109155851	71759409	510	99723											
TSLP	85480	broad.mit.edu	37	chr5	110407739	110407739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtactatttctaaagacCtgattacatatatgagtggg	8	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110407739	A	A	110407739	3	1	102	1	0	0	0	0	1	0	0	0	16753	680	24	2	153	2	TSLP	5	110407739	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1251888	110407739	70507521	511	99724											
APC	324	broad.mit.edu	37	chr5	112178228	112178228	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgaccccttcaagacctGcccagcaaccattaagtaga	6	14	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112178228	T	T	112178228	3	4	102	1	0	0	0	0	1	0	0	0	765	1319	46	3	6995	3	APC	5	112178228	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1770489	112178228	68737032	512	99725											
YTHDC2	64848	broad.mit.edu	37	chr5	112860956	112860956	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttagatttattttcgaaaAccaagatgaaataagatttc	5	4	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112860956	T	T	112860956	1	4	102	0	1	0	0	0	0	0	0	0	17624	58	2	5		5	YTHDC2	5	112860956	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	682728	112860956	68054304	513	99726											
SEMA6A	57556	broad.mit.edu	37	chr5	115838024	115838024	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccggatactgttttgtatCtgtgaaaagaggagatgggg	14	5	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115838024	A	A	115838024	5	1	102	1	0	0	0	0	0	0	1	0	14152	927	32	3	3060	3	SEMA6A	5	115838024	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	2977068	115838024	65077236	514	99727											
MEGF10	84466	broad.mit.edu	37	chr5	126732373	126732373	+	Frame_Shift_Del	DEL	G	-	-													gctgtgagcagggcacctatGgtaacgactgtcatcagaga							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126732373	-	-	126732373	7	5	102	1	0	1	0	1	0	0	0	0	9553	1348	47	0	580	0	MEGF10	5	126732373	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	10894349	126732373	54182887	515	99728											
MEGF10	84466	broad.mit.edu	37	chr5	126734443	126734443	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtcaaaatggaggagtGtgtcatcacgtcactggaga	12	8	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126734443	T	T	126734443	2	4	102	1	0	0	0	0	0	0	0	1	9553	1364	48	3		3	MEGF10	5	126734443	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	2070	126734443	54180817	516	99729											
MEGF10	84466	broad.mit.edu	37	chr5	126771052	126771052	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacctatagcttattcacaGtgtgtcccagtggcagattt	9	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126771052	A	A	126771052	5	1	102	1	0	0	0	0	0	0	1	0	9553	1043	36	4	2033	4	MEGF10	5	126771052	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	36609	126771052	54144208	517	99730											
FBN2	2201	broad.mit.edu	37	chr5	127648464	127648464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgaggtccaaacttcaGgtagcagttgcccacacggt	10	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127648464	T	T	127648464	3	4	102	1	0	0	0	0	1	0	0	0	5760	991	35	2	4113	2	FBN2	5	127648464	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	877412	127648464	53266796	518	99731											
FBN2	2201	broad.mit.edu	37	chr5	127712525	127712525	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccattcaaacacatgttgGtagttgtacattcatcatga	6	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127712525	C	C	127712525	3	2	102	1	0	0	0	0	1	0	0	0	5760	1261	44	4	7075	4	FBN2	5	127712525	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	64061	127712525	53202735	519	99732											
ADAMTS19	171019	broad.mit.edu	37	chr5	128844829	128844829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccactcaatgatacaatGgccataacaggtcacccaca	7	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128844829	T	T	128844829	3	4	102	1	0	0	0	0	1	0	0	0	264	1348	47	2	799	2	ADAMTS19	5	128844829	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1132304	128844829	52070431	520	99733											
CHSY3	337876	broad.mit.edu	37	chr5	129520233	129520233	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaatgaagtgatagaatgGgagttcctgacagggaagct	14	4	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129520233	C	C	129520233	3	2	102	1	0	0	0	0	1	0	0	0	3444	1241	43	4	1408	4	CHSY3	5	129520233	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	675404	129520233	51395027	521	99734											
CTNNA1	1495	broad.mit.edu	37	chr5	138148112	138148112	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaatatagttccattaaaAcatttaaactaaggtgtctt	5	7	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138148112	C	C	138148112	1	2	102	0	1	0	0	0	0	0	0	0	4046	58	2	5		5	CTNNA1	5	138148112	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	8627879	138148112	42767148	522	99735											
PCDHA3	56145	broad.mit.edu	37	chr5	140181958	140181958	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgctcgctgacgccccaCgtccccttcaagctggtgtc	9	18	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140181958	T	T	140181958	2	4	102	1	0	0	0	0	0	0	0	1	11619	535	19	4		4	PCDHA3	5	140181958	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	2033846	140181958	40733302	523	99736											
PCDHGA5	56110	broad.mit.edu	37	chr5	140745167	140745167	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attataatatcactttaaccGtcatggaccatggaaccccg	6	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140745167	C	C	140745167	3	2	102	1	0	0	0	0	1	0	0	0	11651	1145	40	4	1272	4	PCDHGA5	5	140745167	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	563209	140745167	40170093	524	99737											
PCDHGA5	56110	broad.mit.edu	37	chr5	140746231	140746231	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccaactacgcagacacGctccttagtgaagagagctg	10	13	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140746231	T	T	140746231	2	4	102	1	0	0	0	0	0	0	0	1	11651	1074	38	3		3	PCDHGA5	5	140746231	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1064	140746231	40169029	525	99738											
PCDHGA6	56109	broad.mit.edu	37	chr5	140754620	140754620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgttgaagcccgggatGggccaggtcttcgagacaga	17	8	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140754620	T	T	140754620	3	4	102	1	0	0	0	0	1	0	0	0	11652	1348	47	2	972	2	PCDHGA6	5	140754620	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	8389	140754620	40160640	526	99739											
SPINK13	153218	broad.mit.edu	37	chr5	147661755	147661755	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtgcctcaaatggccAcactttccagaatgagtgtt	9	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147661755	C	C	147661755	3	2	102	1	0	0	0	0	1	0	0	0	15176	159	6	5	207	5	SPINK13	5	147661755	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	6907135	147661755	33253505	527	99740											
FBXO38	81545	broad.mit.edu	37	chr5	147790184	147790184	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttactctgatatgttctctGtctttattcacaggttacat	5	8	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147790184	C	C	147790184	1	2	102	0	1	0	0	0	0	0	0	0	5803	1392	48	4		4	FBXO38	5	147790184	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	128429	147790184	33125076	528	99741											
SH3TC2	79628	broad.mit.edu	37	chr5	148441803	148441803	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatttccccaaagccaccActcatcctgataaacaccac	2	18	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148441803	T	T	148441803	1	4	102	0	1	0	0	0	0	0	0	0	14375	174	6	5		5	SH3TC2	5	148441803	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	651619	148441803	32473457	529	99742											
PDE6A	5145	broad.mit.edu	37	chr5	149283345	149283345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataccattttcagaaacacCatgttcttgtccaaggcatt	5	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149283345	A	A	149283345	1	1	102	0	1	0	0	0	0	0	0	0	11739	609	21	2		2	PDE6A	5	149283345	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	841542	149283345	31631915	530	99743											
FAM114A2	10827	broad.mit.edu	37	chr5	153407640	153407640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaacactaacaaggttcCaagtaaacaaaggcaaaaat	6	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153407640	A	A	153407640	1	1	102	0	1	0	0	0	0	0	0	0	5450	609	21	2		2	FAM114A2	5	153407640	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4124295	153407640	27507620	531	99744											
CYFIP2	26999	broad.mit.edu	37	chr5	156751011	156751011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgaggagcagcctggatgGacccattgtcctcgccatag	12	13	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156751011	T	T	156751011	3	4	102	1	0	0	0	0	1	0	0	0	4171	1174	41	3	1812	3	CYFIP2	5	156751011	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3343371	156751011	24164249	532	99745											
GABRB2	2561	broad.mit.edu	37	chr5	160837925	160837925	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagccaggactggaggcctCtgcgtaagaaccttaaagca	12	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160837925	A	A	160837925	1	1	102	0	1	0	0	0	0	0	0	0	6227	928	32	3		3	GABRB2	5	160837925	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4086914	160837925	20077335	533	99746											
GABRG2	2566	broad.mit.edu	37	chr5	161522616	161522616	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttttattagcatgtttgaGagaaaatgtgatgtcatgga	11	2	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161522616	T	T	161522616	1	4	102	0	1	0	0	0	0	0	0	0	6232	957	33	3		3	GABRG2	5	161522616	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	684691	161522616	19392644	534	99747											
WWC1	23286	broad.mit.edu	37	chr5	167850650	167850650	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccacttcagccagcttcActgacctctactatgacccc	4	19	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167850650	G	G	167850650	3	3	102	1	0	0	0	0	1	0	0	0	17538	159	6	5	1429	5	WWC1	5	167850650	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	6328034	167850650	13064610	535	99748											
GABRP	2568	broad.mit.edu	37	chr5	170235647	170235647	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtttgagcttcggaggaaTgttctgtatttcattttgga	11	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170235647	C	C	170235647	2	2	102	1	0	0	0	0	0	0	0	1	6234	1461	51	5		5	GABRP	5	170235647	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	2384997	170235647	10679613	536	99749											
RNF44	22838	broad.mit.edu	37	chr5	175959138	175959138	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcgggacggcggctgctggGagggtaagcgctcatcccgg	19	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175959138	A	A	175959138	3	1	102	1	0	0	0	0	1	0	0	0	13607	1174	41	4	1170	4	RNF44	5	175959138	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	5723491	175959138	4956122	537	99750											
TBC1D9B	23061	broad.mit.edu	37	chr5	179290820	179290820	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgccgctgcccccctccacCaccacctggctctcctgtgg	8	22	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179290820	G	G	179290820	2	3	102	1	0	0	0	0	0	0	0	1	15750	581	21	4		4	TBC1D9B	5	179290820	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	3331682	179290820	1624440	538	99751											
BTNL8	79908	broad.mit.edu	37	chr5	180338529	180338529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtggagatctctctgacCgtccaagagaacgccgggag	14	10	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180338529	A	A	180338529	2	1	102	1	0	0	0	0	0	0	0	1	1577	639	23	1		1	BTNL8	5	180338529	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1047709	180338529	576731	539	99752											
BTNL8	79908	broad.mit.edu	37	chr5	180375420	180375420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccacacatggttctcccGggtccctccctgatccacag	7	19	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180375420	T	T	180375420	1	4	102	0	1	0	0	0	0	0	0	0	1577	1131	39	1		1	BTNL8	5	180375420	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	36891	180375420	539840	540	99753											
BTNL8	79908	broad.mit.edu	37	chr5	180377625	180377625	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccgcagcagccggccaagGtggcttccagatgaaggggg	16	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180377625	A	A	180377625	1	1	102	0	1	0	0	0	0	0	0	0	1577	1276	44	4		4	BTNL8	5	180377625	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	2205	180377625	537635	541	99754											
PECI	10455	broad.mit.edu	37	chr6	4117422	4117422	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaattccaaatttagatgTgcttagaggtaactaaagat	7	4	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4117422	G	G	4117422	1	3	102	0	1	0	0	0	0	0	0	0	11810	1711	59	5		5	PECI	6	4117422	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08		4117422	166997645	542	99755											
RREB1	6239	broad.mit.edu	37	chr6	7230553	7230553	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgagtatgtgagtagcagcGcggccgagctggtggacgcc	17	10	0	1	rs142616407	byFrequency	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7230553	C	C	7230553	3	2	102	1	0	0	0	0	1	0	0	0	13790	1087	38	4	2247	4	RREB1	6	7230553	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3113131	7230553	163884514	543	99756											
DSP	1832	broad.mit.edu	37	chr6	7559414	7559414	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcccagaacgggttttcAtaggctgttttcctgcagtg	11	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7559414	G	G	7559414	1	3	102	0	1	0	0	0	0	0	0	0	4821	232	8	5		5	DSP	6	7559414	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	328861	7559414	163555653	544	99757											
HIVEP1	3096	broad.mit.edu	37	chr6	12120112	12120112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtttgttgttgttgttGttttttccagaaatcttaca	7	4	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12120112	T	T	12120112	1	4	102	0	1	0	0	0	0	0	0	0	7253	1392	48	3		3	HIVEP1	6	12120112	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4560698	12120112	158994955	545	99758											
CCDC90A	63933	broad.mit.edu	37	chr6	13799214	13799214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggacgtgacactgggaCcactgcccccactgtcccta	10	15	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13799214	A	A	13799214	1	1	102	0	1	0	0	0	0	0	0	0	2896	522	18	3		3	CCDC90A	6	13799214	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1679102	13799214	157315853	546	99759											
NUP153	9972	broad.mit.edu	37	chr6	17688816	17688816	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagccaccctggcacaatatTcttaacagattctgtaaccc	5	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17688816	C	C	17688816	3	2	102	1	0	0	0	0	1	0	0	0	10850	1783	62	5	4366	5	NUP153	6	17688816	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	3889602	17688816	153426251	547	99760											
RNF144B	255488	broad.mit.edu	37	chr6	18457301	18457301	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactctggttccaaataaatTaaataaataagagggcaaat	7	5	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18457301	G	G	18457301	1	3	102	0	1	0	0	0	0	0	0	0	13557	1769	61	5		5	RNF144B	6	18457301	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	768485	18457301	152657766	548	99761											
SCGN	10590	broad.mit.edu	37	chr6	25652562	25652562	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagcaagtcaagaaataCggtgaaggagtccttcccaa	12	8	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25652562	A	A	25652562	1	1	102	0	1	0	0	0	0	0	0	0	14016	551	19	3		3	SCGN	6	25652562	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	7195261	25652562	145462505	549	99762											
HFE	3077	broad.mit.edu	37	chr6	26087764	26087764	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagtccgagggctgcggGcgaactaggggcgcggcggg	22	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26087764	T	T	26087764	1	4	102	0	1	0	0	0	0	0	0	0	7148	1218	42	3		3	HFE	6	26087764	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	435202	26087764	145027303	550	99763											
OR2W1	26692	broad.mit.edu	37	chr6	29012594	29012594	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatagctgtaaaacgatcaTaggacataacagccaggaga	9	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29012594	A	A	29012594	3	1	102	1	0	0	0	0	1	0	0	0	11126	1406	49	5	607	5	OR2W1	6	29012594	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2924830	29012594	142102473	551	99764											
CCHCR1	54535	broad.mit.edu	37	chr6	31116303	31116303	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggccctggggaggatgcaGcaaaggacagggtccctccc	15	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31116303	A	A	31116303	1	1	102	0	1	0	0	0	0	0	0	0	2905	986	34	4		4	CCHCR1	6	31116303	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2103709	31116303	139998764	552	99765											
DDAH2	23564	broad.mit.edu	37	chr6	31696949	31696949	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtccccatcccatccacaCagactccccctccaaccgct	4	23	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31696949	A	A	31696949	1	1	102	0	1	0	0	0	0	0	0	0	4355	493	17	3		3	DDAH2	6	31696949	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	580646	31696949	139418118	553	99766											
C6orf27	80737	broad.mit.edu	37	chr6	31735274	31735274	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagaggacccccgccttcctCctggccctgggagacccctg	11	18	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31735274	G	G	31735274	3	3	102	1	0	0	0	0	1	0	0	0	2385	864	30	4	1044	4	C6orf27	6	31735274	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	38325	31735274	139379793	554	99767											
HSPA1L	3305	broad.mit.edu	37	chr6	31777646	31777646	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttttcctgagtccattcCaaagtcagaaacaggatgtg	9	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31777646	A	A	31777646	1	1	102	0	1	0	0	0	0	0	0	0	7479	609	21	2		2	HSPA1L	6	31777646	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	42372	31777646	139337421	555	99768											
SKIV2L	6499	broad.mit.edu	37	chr6	31931987	31931987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgagactccatccctgacCatgggcctcctcccaccaaa	6	19	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31931987	T	T	31931987	1	4	102	0	1	0	0	0	0	0	0	0	14472	609	21	4		4	SKIV2L	6	31931987	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	154341	31931987	139183080	556	99769											
ATF6B	1388	broad.mit.edu	37	chr6	32085191	32085191	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcagcaagcctggggaaaTggaggagctcaggacctcca	14	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32085191	C	C	32085191	1	2	102	0	1	0	0	0	0	0	0	0	1089	1479	51	5		5	ATF6B	6	32085191	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	153204	32085191	139029876	557	99770											
PBX2	5089	broad.mit.edu	37	chr6	32155933	32155934	+	Splice_Site	DNP	CC	AA	AA													ggtcgtgaactcattacatgCctgtagtgggggccagtggg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32155934	AA	AA	32155933	5	1	102	1	0	0	0	0	0	0	1	0	11587	753	26	3	772	3	PBX2	6	32155933	Splice_Site	DNP	CC	TCGA-38-4631-01A-01D-1753-08	70742	32155933	138959134	558	99771											
NOTCH4	4855	broad.mit.edu	37	chr6	32188606	32188606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccccattctgacactgGtggctgacacagttgtctgg	12	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32188606	T	T	32188606	3	4	102	1	0	0	0	0	1	0	0	0	10646	1252	44	3	5266	3	NOTCH4	6	32188606	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	32673	32188606	138926461	559	99772											
BRD2	6046	broad.mit.edu	37	chr6	32948002	32948002	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggattgtcagctcccaggAtaatgggatgtgttggttgg	15	6	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32948002	G	G	32948002	1	3	102	0	1	0	0	0	0	0	0	0	1511	348	12	5		5	BRD2	6	32948002	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	759396	32948002	138167065	560	99773											
RXRB	6257	broad.mit.edu	37	chr6	33163925	33163925	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtcttcctgtgagccccatCcaaaccaatccctgtaagtg	7	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33163925	A	A	33163925	1	1	102	0	1	0	0	0	0	0	0	0	13875	870	30	3		3	RXRB	6	33163925	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	215923	33163925	137951142	561	99774											
SLC39A7	7922	broad.mit.edu	37	chr6	33168967	33168967	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagtaaagcggaccctgtGtaggtatagagttgagtcaa	14	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33168967	A	A	33168967	1	1	102	0	1	0	0	0	0	0	0	0	14737	1392	48	4		4	SLC39A7	6	33168967	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5042	33168967	137946100	562	99775											
SYNGAP1	8831	broad.mit.edu	37	chr6	33405290	33405290	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagatcacattcacaggttCagggtagacatgagttttgg	11	6	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33405290	T	T	33405290	1	4	102	0	1	0	0	0	0	0	0	0	15566	841	29	4		4	SYNGAP1	6	33405290	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	236323	33405290	137709777	563	99776											
FKBP5	2289	broad.mit.edu	37	chr6	35588009	35588009	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggcatatctctcctttcTtcatggtagccaccccaatg	6	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35588009	C	C	35588009	3	2	102	1	0	0	0	0	1	0	0	0	5968	1609	56	5	1170	5	FKBP5	6	35588009	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2182719	35588009	135527058	564	99777											
DNAH8	1769	broad.mit.edu	37	chr6	38816346	38816346	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcccaaagtaatatttcttCtggaatttacttcggtaagg	7	7	2	0	rs114063428	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38816346	G	G	38816346	1	3	102	0	1	0	0	0	0	0	0	0	4647	928	32	4		4	DNAH8	6	38816346	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3228337	38816346	132298721	565	99778											
DNAH8	1769	broad.mit.edu	37	chr6	38835952	38835952	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtcatgagaggactaagaGatatgaacctttccaaactg	9	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835952	A	A	38835952	3	1	102	1	0	0	0	0	1	0	0	0	4647	942	33	4	6331	4	DNAH8	6	38835952	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	19606	38835952	132279115	566	99779											
GUCA1A	2978	broad.mit.edu	37	chr6	42145853	42145853	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagacagataggtcacggcgGagacagggctggccccctcg	15	12	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42145853	A	A	42145853	1	1	102	0	1	0	0	0	0	0	0	0	6953	1189	41	4		4	GUCA1A	6	42145853	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3309901	42145853	128969214	567	99780											
KIAA0240	23506	broad.mit.edu	37	chr6	42832695	42832695	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgcagtaccagagcacGtctgaagagaaggccagccg	13	10	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42832695	T	T	42832695	2	4	102	1	0	0	0	0	0	0	0	1	8234	1132	40	3		3	KIAA0240	6	42832695	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	686842	42832695	128282372	568	99781											
TFAP2D	83741	broad.mit.edu	37	chr6	50696815	50696815	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtcatgatgtcttccatCtgatagtgtattccccatgt	7	9	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50696815	A	A	50696815	1	1	102	0	1	0	0	0	0	0	0	0	15913	928	32	3		3	TFAP2D	6	50696815	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	7864120	50696815	120418252	569	99782											
TFAP2D	83741	broad.mit.edu	37	chr6	50696835	50696835	+	Intron	DEL	T	-	-													ctgatagtgtattccccatgTggtcaagtcgtctcataatt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50696835	-	-	50696835	6	5	102	0	1	1	0	1	0	0	0	0	15913	1711	59	0		0	TFAP2D	6	50696835	Intron	DEL	T	TCGA-38-4631-01A-01D-1753-08	20	50696835	120418232	570	99783											
PKHD1	5314	broad.mit.edu	37	chr6	51890625	51890625	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggttccccagaaggatgActgagttggagaggttactt	13	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51890625	T	T	51890625	3	4	102	1	0	0	0	0	1	0	0	0	12066	275	10	5	8424	5	PKHD1	6	51890625	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1193790	51890625	119224442	571	99784											
PKHD1	5314	broad.mit.edu	37	chr6	51944753	51944753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcttaccagctgtcccCcgaagtatgcttccaggaag	10	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51944753	A	A	51944753	3	1	102	1	0	0	0	0	1	0	0	0	12066	623	22	2	12180	2	PKHD1	6	51944753	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	54128	51944753	119170314	572	99785											
GCM1	8521	broad.mit.edu	37	chr6	52996762	52996762	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctagcctctggtgaaactCctcagtaatgaaactctcac	6	12	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52996762	T	T	52996762	1	4	102	0	1	0	0	0	0	0	0	0	6359	870	30	4		4	GCM1	6	52996762	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1052009	52996762	118118305	573	99786											
DST	667	broad.mit.edu	37	chr6	56354521	56354521	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcctgaaaattattattTcaaaatttccactgaagaag	4	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56354521	G	G	56354521	1	3	102	0	1	0	0	0	0	0	0	0	4823	1798	62	5		5	DST	6	56354521	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3357759	56354521	114760546	574	99787											
DST	667	broad.mit.edu	37	chr6	56473996	56473996	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagcactttcttaattcTggtgaaattagaccagaaat	6	7	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56473996	C	C	56473996	1	2	102	0	1	0	0	0	0	0	0	0	4823	1595	55	5		5	DST	6	56473996	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	119475	56473996	114641071	575	99788											
PRIM2	5558	broad.mit.edu	37	chr6	57512833	57512833	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattgcagcctcaaccttcCcagctcaagtgatcctccta	6	15	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512833	A	A	57512833	1	1	102	0	1	0	0	0	0	0	0	0	12597	638	22	2		2	PRIM2	6	57512833	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	1038837	57512833	113602234	576	99789											
KHDRBS2	202559	broad.mit.edu	37	chr6	62407074	62407074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggatgttccgatttcaCagttttagtaaagaaaaggt	10	4	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62407074	A	A	62407074	1	1	102	0	1	0	0	0	0	0	0	0	8217	493	17	3		3	KHDRBS2	6	62407074	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4894241	62407074	108707993	577	99790											
EYS	346007	broad.mit.edu	37	chr6	66063473	66063473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaacattcttcaaaaacCaacatggattttttgtgcac	6	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66063473	A	A	66063473	3	1	102	1	0	0	0	0	1	0	0	0	5375	595	21	2	8199	2	EYS	6	66063473	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3656399	66063473	105051594	578	99791											
BAI3	577	broad.mit.edu	37	chr6	70037889	70037889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatggaatcattaacaatGgtagaaattgcattagtaag	8	4	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70037889	T	T	70037889	1	4	102	0	1	0	0	0	0	0	0	0	1305	1363	47	2		2	BAI3	6	70037889	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3974416	70037889	101077178	579	99792											
BAI3	577	broad.mit.edu	37	chr6	70065732	70065732	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagactttgaaaaggatgTagacattgcctgtcgatcag	11	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70065732	C	C	70065732	3	2	102	1	0	0	0	0	1	0	0	0	1305	1638	57	5	3677	5	BAI3	6	70065732	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	27843	70065732	101049335	580	99793											
PHIP	55023	broad.mit.edu	37	chr6	79650327	79650327	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccctactccaccacagcaGcaaggaagcagaagccttag	8	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79650327	C	C	79650327	1	2	102	0	1	0	0	0	0	0	0	0	11937	986	34	4		4	PHIP	6	79650327	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	9584595	79650327	91464740	581	99794											
SNAP91	9892	broad.mit.edu	37	chr6	84350818	84350818	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttaatattacttacctcTgcaaccttgagaaattcaga	4	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84350818	G	G	84350818	2	3	102	1	0	0	0	0	0	0	0	1	14947	1567	55	5		5	SNAP91	6	84350818	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	4700491	84350818	86764249	582	99795											
SNX14	57231	broad.mit.edu	37	chr6	86257157	86257157	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taactcagtaaaattcccacTtgatttgacatacaaaatca	3	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86257157	A	A	86257157	1	1	102	0	1	0	0	0	0	0	0	0	14999	1624	56	5		5	SNX14	6	86257157	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	1906339	86257157	84857910	583	99796											
HTR1E	3354	broad.mit.edu	37	chr6	87726233	87726233	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaacttattaattcttgaAcatacttggttcaggagagt	8	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87726233	T	T	87726233	1	4	102	0	1	0	0	0	0	0	0	0	7509	58	2	5		5	HTR1E	6	87726233	3'UTR	SNP	A	TCGA-38-4631-01A-01D-1753-08	1469076	87726233	83388834	584	99797											
MDN1	23195	broad.mit.edu	37	chr6	90382348	90382348	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaagttctggatggcacaGaggatggctcggatggcaat	14	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90382348	C	C	90382348	2	2	102	1	0	0	0	0	0	0	0	1	9508	929	33	4		4	MDN1	6	90382348	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	2656115	90382348	80732719	585	99798											
MDN1	23195	broad.mit.edu	37	chr6	90432663	90432663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaatacaaataccaagcGtgaaactcaccttttttttg	5	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90432663	A	A	90432663	1	1	102	0	1	0	0	0	0	0	0	0	9508	1160	40	4		4	MDN1	6	90432663	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	50315	90432663	80682404	586	99799											
MCHR2	84539	broad.mit.edu	37	chr6	100395640	100395640	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagtctttcacttacctGtccacactcattacagtcat	3	13	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100395640	A	A	100395640	2	1	102	1	0	0	0	0	0	0	0	1	9476	1368	48	4		4	MCHR2	6	100395640	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	9962977	100395640	70719427	587	99800											
AMD1	262	broad.mit.edu	37	chr6	111214511	111214511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctattgacaggcctctGgtgggaggaaccataagatg	13	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111214511	T	T	111214511	1	4	102	0	1	0	0	0	0	0	0	0	566	1363	47	2		2	AMD1	6	111214511	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	10818871	111214511	59900556	588	99801											
REV3L	5980	broad.mit.edu	37	chr6	111695587	111695587	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggtcctatagaattaCaaacaactgatggatgcaaa	7	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111695587	G	G	111695587	3	3	102	1	0	0	0	0	1	0	0	0	13348	478	17	4	5501	4	REV3L	6	111695587	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	481076	111695587	59419480	589	99802											
TUBE1	51175	broad.mit.edu	37	chr6	112402209	112402209	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtggcaaattacatccTgtttcgtatcagcagaatct	7	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112402209	C	C	112402209	1	2	102	0	1	0	0	0	0	0	0	0	16889	1595	55	5		5	TUBE1	6	112402209	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	706622	112402209	58712858	590	99803											
LAMA4	3910	broad.mit.edu	37	chr6	112493804	112493804	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgcattgatggtgagtgtCcgctgtacctcatggtcccg	12	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112493804	T	T	112493804	1	4	102	0	1	0	0	0	0	0	0	0	8680	870	30	4		4	LAMA4	6	112493804	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	91595	112493804	58621263	591	99804											
RFX6	222546	broad.mit.edu	37	chr6	117249833	117249833	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttacagtttgatatctttagGacgtcacctcattactttgt	6	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117249833	T	T	117249833	1	4	102	0	1	0	0	0	0	0	0	0	13375	1189	41	3		3	RFX6	6	117249833	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4756029	117249833	53865234	592	99805											
ROS1	6098	broad.mit.edu	37	chr6	117609599	117609599	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctagcagagttttctttCagtaactactgaatgagagt	8	6	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117609599	A	A	117609599	1	1	102	0	1	0	0	0	0	0	0	0	13642	841	29	3		3	ROS1	6	117609599	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	359766	117609599	53505468	593	99806											
GJA1	2697	broad.mit.edu	37	chr6	121769099	121769099	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttcaagcagagccagcaGtcgtgccagcagcagacctc	10	15	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121769099	A	A	121769099	3	1	102	1	0	0	0	0	1	0	0	0	6464	1029	36	4	1108	4	GJA1	6	121769099	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4159500	121769099	49345968	594	99807											
TRMT11	60487	broad.mit.edu	37	chr6	126319418	126319418	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaataaagattcacacttTtaataagacattgacacaag	4	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126319418	C	C	126319418	3	2	102	1	0	0	0	0	1	0	0	0	16687	1841	64	5	362	5	TRMT11	6	126319418	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	4550319	126319418	44795649	595	99808											
L3MBTL3	84456	broad.mit.edu	37	chr6	130454536	130454536	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgttatctgggagatgcacGgcatttggggctttcttgct	13	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130454536	C	C	130454536	1	2	102	0	1	0	0	0	0	0	0	0	8665	1131	39	4		4	L3MBTL3	6	130454536	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4135118	130454536	40660531	596	99809											
EPB41L2	2037	broad.mit.edu	37	chr6	131179131	131179131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacacccgagcagatgcacCtggggatgataacagtctag	11	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131179131	A	A	131179131	1	1	102	0	1	0	0	0	0	0	0	0	5195	696	24	2		2	EPB41L2	6	131179131	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	724595	131179131	39935936	597	99810											
EPB41L2	2037	broad.mit.edu	37	chr6	131188787	131188787	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaagtgtttaatggaacCttcacaaataatagtaagaa	7	4	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131188787	G	G	131188787	1	3	102	0	1	0	0	0	0	0	0	0	5195	696	24	4		4	EPB41L2	6	131188787	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	9656	131188787	39926280	598	99811											
EPB41L2	2037	broad.mit.edu	37	chr6	131247753	131247753	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaatcacttactttctgctCagggctttcctgaaacaaaa	6	10	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131247753	A	A	131247753	4	1	102	1	0	0	0	0	0	1	0	0	5195	835	29	3	2279	3	EPB41L2	6	131247753	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	58966	131247753	39867314	599	99812											
ENPP1	5167	broad.mit.edu	37	chr6	132179897	132179897	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattgtcaccgtaagctctGcatttcaacttctatctgtt	6	11	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132179897	A	A	132179897	1	1	102	0	1	0	0	0	0	0	0	0	5171	1334	46	4		4	ENPP1	6	132179897	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	932144	132179897	38935170	600	99813											
VNN1	8876	broad.mit.edu	37	chr6	133004338	133004338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcattattattcttgcttGtgctgtgaggcctgatgaag	11	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133004338	T	T	133004338	3	4	102	1	0	0	0	0	1	0	0	0	17309	1386	48	3	62	3	VNN1	6	133004338	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	824441	133004338	38110729	601	99814											
ALDH8A1	64577	broad.mit.edu	37	chr6	135250221	135250221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctttacttatcagagCacctatgctcaccagtggat	8	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135250221	A	A	135250221	3	1	102	1	0	0	0	0	1	0	0	0	505	710	25	3	489	3	ALDH8A1	6	135250221	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2245883	135250221	35864846	602	99815											
HBS1L	10767	broad.mit.edu	37	chr6	135363117	135363117	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaatcactttcagataacaGatacactactttttgctata	3	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135363117	C	C	135363117	1	2	102	0	1	0	0	0	0	0	0	0	7053	957	33	4		4	HBS1L	6	135363117	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	112896	135363117	35751950	603	99816											
KIAA1244	57221	broad.mit.edu	37	chr6	138584671	138584671	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagtccctggaaggcctccTccctcggctcctgtctctct	8	18	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138584671	A	A	138584671	3	1	102	1	0	0	0	0	1	0	0	0	8287	1551	54	5	2097	5	KIAA1244	6	138584671	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	3221554	138584671	32530396	604	99817											
TXLNB	167838	broad.mit.edu	37	chr6	139569031	139569031	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaattcttcaaaccttcCtgagtagagagtgagctgta	10	8	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139569031	A	A	139569031	4	1	102	1	0	0	0	0	0	1	0	0	16914	690	24	2	973	2	TXLNB	6	139569031	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	984360	139569031	31546036	605	99818											
AIG1	51390	broad.mit.edu	37	chr6	143605319	143605319	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatcccagcaggagcagcGgacttaccgccatatgtacc	10	13	0	0	rs115165047	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143605319	T	T	143605319	4	4	102	1	0	0	0	0	0	1	0	0	429	1117	39	1	486	1	AIG1	6	143605319	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4036288	143605319	27509748	606	99819											
SF3B5	83443	broad.mit.edu	37	chr6	144416564	144416564	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcccacttggtggtgtcgGcgtggcccgtgccgatgtac	14	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144416564	A	A	144416564	3	1	102	1	0	0	0	0	1	0	0	0	14267	1203	42	4	193	4	SF3B5	6	144416564	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	811245	144416564	26698503	607	99820											
UTRN	7402	broad.mit.edu	37	chr6	144750883	144750883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattaatatacaggtacaGgtaacattttattaagatgt	7	4	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144750883	T	T	144750883	1	4	102	0	1	0	0	0	0	0	0	0	17230	1015	35	2		2	UTRN	6	144750883	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	334319	144750883	26364184	608	99821											
C6orf97	80129	broad.mit.edu	37	chr6	151914510	151914510	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccaccatgtttaccagtgTagctaggaaggctcttataa	9	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151914510	C	C	151914510	1	2	102	0	1	0	0	0	0	0	0	0	2399	1653	57	5		5	C6orf97	6	151914510	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	7163627	151914510	19200557	609	99822											
C6orf97	80129	broad.mit.edu	37	chr6	151939299	151939299	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaacactgtatctcttgaGagaggtggccataagacatg	11	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151939299	A	A	151939299	1	1	102	0	1	0	0	0	0	0	0	0	2399	957	33	4		4	C6orf97	6	151939299	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	24789	151939299	19175768	610	99823											
RGS17	26575	broad.mit.edu	37	chr6	153365019	153365019	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggtgtggcatcctacAggtaacatgacataccagga	12	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153365019	C	C	153365019	1	2	102	0	1	0	0	0	0	0	0	0	13408	203	7	5		5	RGS17	6	153365019	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1425720	153365019	17750048	611	99824											
OPRM1	4988	broad.mit.edu	37	chr6	154410984	154410984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaagatgaagactgccaCcaacatctacattttcaacc	4	14	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154410984	A	A	154410984	3	1	102	1	0	0	0	0	1	0	0	0	10981	507	18	3	654	3	OPRM1	6	154410984	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1045965	154410984	16704083	612	99825											
ARID1B	57492	broad.mit.edu	37	chr6	157222534	157222534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctcagtatggacagcaaGgtgtgagtggttactgccag	13	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157222534	T	T	157222534	3	4	102	1	0	0	0	0	1	0	0	0	916	1000	35	2	1815	2	ARID1B	6	157222534	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2811550	157222534	13892533	613	99826											
ARID1B	57492	broad.mit.edu	37	chr6	157510713	157510713	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgtataactagcaaggCagctgggcttacttgataat	9	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157510713	T	T	157510713	1	4	102	0	1	0	0	0	0	0	0	0	916	725	25	4		4	ARID1B	6	157510713	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	288179	157510713	13604354	614	99827											
IGF2R	3482	broad.mit.edu	37	chr6	160497131	160497131	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaaggatactcttattcaAaatgtctgccttgggtaaga	8	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160497131	T	T	160497131	1	4	102	0	1	0	0	0	0	0	0	0	7646	29	1	5		5	IGF2R	6	160497131	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2986418	160497131	10617936	615	99828											
LPA	4018	broad.mit.edu	37	chr6	160966591	160966591	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacaagcaggcatgtaagctCcagctcacgtggagcaggag	13	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160966591	A	A	160966591	1	1	102	0	1	0	0	0	0	0	0	0	8990	870	30	3		3	LPA	6	160966591	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	469460	160966591	10148476	616	99829											
LPA	4018	broad.mit.edu	37	chr6	161087439	161087439	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaagaaatggtaactaCgtccacaacatgttcacaag	8	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161087439	G	G	161087439	1	3	102	0	1	0	0	0	0	0	0	0	8990	551	19	4		4	LPA	6	161087439	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	120848	161087439	10027628	617	99830											
PLG	5340	broad.mit.edu	37	chr6	161160270	161160270	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctgtggtcttcaccccaCgctggtgaagatatttgctt	9	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161160270	G	G	161160270	1	3	102	0	1	0	0	0	0	0	0	0	12181	551	19	4		4	PLG	6	161160270	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	72831	161160270	9954797	618	99831											
PARK2	5071	broad.mit.edu	37	chr6	161990305	161990305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtcaggagacatactcGgcctccctggggagcccaaa	13	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161990305	T	T	161990305	1	4	102	0	1	0	0	0	0	0	0	0	11543	1131	39	1		1	PARK2	6	161990305	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	830035	161990305	9124762	619	99832											
FAM120B	84498	broad.mit.edu	37	chr6	170627610	170627610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaacccaggcaagaagttCccatgtgttcagaccctgaa	9	12	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170627610	A	A	170627610	3	1	102	1	0	0	0	0	1	0	0	0	5463	855	30	3	1134	3	FAM120B	6	170627610	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	8637305	170627610	487457	620	99833											
FAM120B	84498	broad.mit.edu	37	chr6	170657231	170657231	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagttaatggactttttttcTtaactagggggaacgcctag	10	6	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170657231	A	A	170657231	1	1	102	0	1	0	0	0	0	0	0	0	5463	1624	56	5		5	FAM120B	6	170657231	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	29621	170657231	457836	621	99834											
HEATR2	54919	broad.mit.edu	37	chr7	769535	769535	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctctccaacacaggcggGctgacgtgctgtttttaact	9	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	769535	C	C	769535	1	2	102	0	1	0	0	0	0	0	0	0	7095	1218	42	4		4	HEATR2	7	769535	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08		769535	158369128	622	99835											
SUN1	23353	broad.mit.edu	37	chr7	883154	883154	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctagggacaggaatcaaAaatgtaagtctcagtccttt	8	7	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	883154	T	T	883154	4	4	102	1	0	0	0	0	0	1	0	0	15509	15	1	5	740	5	SUN1	7	883154	Nonsense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	113619	883154	158255509	623	99836											
EIF3B	8662	broad.mit.edu	37	chr7	2409324	2409324	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaaaggcacccaggtatgtAgattcccacaggaactgacg	11	11	0	2	rs112295665		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2409324	G	G	2409324	1	3	102	0	1	0	0	0	0	0	0	0	5053	435	15	5		5	EIF3B	7	2409324	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1526170	2409324	156729339	624	99837											
C7orf27	221927	broad.mit.edu	37	chr7	2593983	2593983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccaggagcttctccaaaCaggtgtcatctgccaccggc	10	14	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2593983	A	A	2593983	3	1	102	1	0	0	0	0	1	0	0	0	2407	478	17	3	2434	3	C7orf27	7	2593983	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	184659	2593983	156544680	625	99838											
MMD2	221938	broad.mit.edu	37	chr7	4947150	4947150	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgtgggcaaaggggatcctCccgtcactcttgaagaagac	13	11	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4947150	A	A	4947150	2	1	102	1	0	0	0	0	0	0	0	1	9737	842	30	3		3	MMD2	7	4947150	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	2353167	4947150	154191513	626	99839											
MMD2	221938	broad.mit.edu	37	chr7	4965297	4965297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccctttttcatctcccCctctctctctgtcttcttcc	1	19	7	0	rs150120614	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4965297	A	A	4965297	1	1	102	0	1	0	0	0	0	0	0	0	9737	638	22	2		2	MMD2	7	4965297	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	18147	4965297	154173366	627	99840											
THSD7A	221981	broad.mit.edu	37	chr7	11441716	11441716	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcacacataatatttaTaagatttaaataagcattta	4	6	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11441716	A	A	11441716	1	1	102	0	1	0	0	0	0	0	0	0	16002	1421	49	5		5	THSD7A	7	11441716	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	6476419	11441716	147696947	628	99841											
THSD7A	221981	broad.mit.edu	37	chr7	11871417	11871417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagggtgggcgcctccgcCtcgccctgcgccgcagccct	14	18	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11871417	A	A	11871417	3	1	102	1	0	0	0	0	1	0	0	0	16002	680	24	2	4925	2	THSD7A	7	11871417	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	429701	11871417	147267246	629	99842											
PRPS1L1	221823	broad.mit.edu	37	chr7	18067492	18067492	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agcacagactctaatggcttCcggttgttactcaaccgtta	8	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18067492	G	G	18067492	1	3	102	0	1	0	0	0	0	0	0	0	12685	870	30	4		4	PRPS1L1	7	18067492	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	6196075	18067492	141071171	630	99843											
HDAC9	9734	broad.mit.edu	37	chr7	18868971	18868971	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgaggtactcccagaagcaGatttatggcttcagagatca	11	9	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18868971	T	T	18868971	1	4	102	0	1	0	0	0	0	0	0	0	7081	957	33	3		3	HDAC9	7	18868971	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	801479	18868971	140269692	631	99844											
DNAH11	8701	broad.mit.edu	37	chr7	21789180	21789180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatatgtaaaccagggaaaGgcaccccacagtgctatggc	11	10	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21789180	A	A	21789180	1	1	102	0	1	0	0	0	0	0	0	0	4639	1015	35	4		4	DNAH11	7	21789180	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2920209	21789180	137349483	632	99845											
MGC87042	256227	broad.mit.edu	37	chr7	22534440	22534440	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggcttcattttccaaattTcttcttggtttgtgatgtct	7	7	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22534440	C	C	22534440	3	2	102	1	0	0	0	0	1	0	0	0	9647	1783	62	5	1046	5	MGC87042	7	22534440	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	745260	22534440	136604223	633	99846											
FAM126A	84668	broad.mit.edu	37	chr7	22999980	22999980	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgaatacaccttgtaccttCcttattagatttcatgggac	6	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22999980	T	T	22999980	3	4	102	1	0	0	0	0	1	0	0	0	5475	864	30	4	687	4	FAM126A	7	22999980	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	465540	22999980	136138683	634	99847											
C7orf46	340277	broad.mit.edu	37	chr7	23729051	23729051	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttgctgatcagcacagtGctgcgcctggctttacatgc	10	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23729051	A	A	23729051	3	1	102	1	0	0	0	0	1	0	0	0	2421	1319	46	4	413	4	C7orf46	7	23729051	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	729071	23729051	135409612	635	99848											
OSBPL3	26031	broad.mit.edu	37	chr7	24892122	24892122	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcagacatgtaacttaCggatgacagggcgttcttca	13	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24892122	A	A	24892122	5	1	102	1	0	0	0	0	0	0	1	0	11373	550	19	3	1556	3	OSBPL3	7	24892122	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	1163071	24892122	134246541	636	99849											
SCRN1	9805	broad.mit.edu	37	chr7	29983544	29983544	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgtgcaggccaccccatctCtgtggccttccctgtcctca	8	18	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29983544	A	A	29983544	1	1	102	0	1	0	0	0	0	0	0	0	14051	928	32	3		3	SCRN1	7	29983544	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	5091422	29983544	129155119	637	99850											
INMT	11185	broad.mit.edu	37	chr7	30795407	30795407	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtccccagagctactctgtCaccaatgctgccaacaatgg	8	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30795407	A	A	30795407	2	1	102	1	0	0	0	0	0	0	0	1	7815	813	29	3		3	INMT	7	30795407	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	811863	30795407	128343256	638	99851											
LSM5	23658	broad.mit.edu	37	chr7	32530064	32530064	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttccgcagcccaaacaggctCgaccaatctgaggccgagcg	11	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32530064	G	G	32530064	1	3	102	0	1	0	0	0	0	0	0	0	9146	899	31	4		4	LSM5	7	32530064	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	1734657	32530064	126608599	639	99852											
BBS9	27241	broad.mit.edu	37	chr7	33186083	33186083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcttttgggaggccgacGtgggcagatcacgaggtcag	16	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33186083	T	T	33186083	1	4	102	0	1	0	0	0	0	0	0	0	1347	1160	40	3		3	BBS9	7	33186083	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	656019	33186083	125952580	640	99853											
HERPUD2	64224	broad.mit.edu	37	chr7	35733802	35733802	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacacacttactggtttgcTagggtaaacgttagatagat	9	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35733802	C	C	35733802	3	2	102	1	0	0	0	0	1	0	0	0	7131	1522	53	5	1113	5	HERPUD2	7	35733802	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2547719	35733802	123404861	641	99854											
AMPH	273	broad.mit.edu	37	chr7	38516428	38516428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaacaggtcataaaatacGgagagtggtattcaccatgg	11	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38516428	T	T	38516428	1	4	102	0	1	0	0	0	0	0	0	0	588	1131	39	1		1	AMPH	7	38516428	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2782626	38516428	120622235	642	99855											
DBNL	28988	broad.mit.edu	37	chr7	44096482	44096482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtggccgcttccaggacGtgggaccccaggccccagtg	15	14	0	1	rs61735009	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44096482	T	T	44096482	3	4	102	1	0	0	0	0	1	0	0	0	4288	1145	40	3	472	3	DBNL	7	44096482	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	5580054	44096482	115042181	643	99856											
GCK	2645	broad.mit.edu	37	chr7	44186232	44186232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatacctggacatagggcaGgtccattacatcagcaggca	10	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44186232	T	T	44186232	1	4	102	0	1	0	0	0	0	0	0	0	6355	1015	35	2		2	GCK	7	44186232	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	89750	44186232	114952431	644	99857											
PKD1L1	168507	broad.mit.edu	37	chr7	47852796	47852796	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcagggtcacgttttggttCtctgggtctatcaggtaggg	14	7	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47852796	T	T	47852796	2	4	102	1	0	0	0	0	0	0	0	1	12059	912	32	4		4	PKD1L1	7	47852796	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	3666564	47852796	111285867	645	99858											
PKD1L1	168507	broad.mit.edu	37	chr7	47927531	47927531	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaacattttagcaatctcAcaataaccctgagtttttcc	4	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47927531	T	T	47927531	1	4	102	0	1	0	0	0	0	0	0	0	12059	174	6	5		5	PKD1L1	7	47927531	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	74735	47927531	111211132	646	99859											
ABCA13	154664	broad.mit.edu	37	chr7	48237881	48237881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggtgttatcccctttGttcaaagccttctttgtaac	8	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48237881	T	T	48237881	3	4	102	1	0	0	0	0	1	0	0	0	31	1377	48	3	50	3	ABCA13	7	48237881	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	310350	48237881	110900782	647	99860											
ABCA13	154664	broad.mit.edu	37	chr7	48314899	48314899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgttcaaatgaaagctcccGaatggaaataactaggaaag	9	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48314899	T	T	48314899	3	4	102	1	0	0	0	0	1	0	0	0	31	1058	37	3	5531	3	ABCA13	7	48314899	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	77018	48314899	110823764	648	99861											
POM121L12	285877	broad.mit.edu	37	chr7	53104043	53104043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaaaaatggagcggttGcttccttcgtgcccaggcca	12	11	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104043	T	T	53104043	3	4	102	1	0	0	0	0	1	0	0	0	12336	1319	46	3	681	3	POM121L12	7	53104043	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4789144	53104043	106034620	649	99862											
VSTM2A	222008	broad.mit.edu	37	chr7	54614754	54614754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcacagcccttccctgtccCcgagaaggcggcttgccagc	11	18	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54614754	A	A	54614754	1	1	102	0	1	0	0	0	0	0	0	0	17356	638	22	2		2	VSTM2A	7	54614754	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1510711	54614754	104523909	650	99863											
ZNF680	340252	broad.mit.edu	37	chr7	64023256	64023257	+	Intron	DNP	CC	AA	AA													acagccacttccgaccggttCcaaccagcccctccccctct							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	64023257	AA	AA	64023256	1	1	102	0	1	0	0	0	0	0	0	0	18214	870	30	3		3	ZNF680	7	64023256	Intron	DNP	CC	TCGA-38-4631-01A-01D-1753-08	9408502	64023256	95115407	651	99864											
ZNF138	7697	broad.mit.edu	37	chr7	64292490	64292490	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcaaggtctttaagcaGtccccaacccttactaaaca	7	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64292490	T	T	64292490	1	4	102	0	1	0	0	0	0	0	0	0	17853	1020	36	3		3	ZNF138	7	64292490	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	269234	64292490	94846173	652	99865											
CALN1	83698	broad.mit.edu	37	chr7	71275385	71275385	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctcttcctcattgataatGatgttctcaatgtccttcat	4	11	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71275385	T	T	71275385	2	4	102	1	0	0	0	0	0	0	0	1	2617	1280	45	3		3	CALN1	7	71275385	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	6982895	71275385	87863278	653	99866											
POR	5447	broad.mit.edu	37	chr7	75552087	75552087	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaagatggcaaagcaggaGcaaagaaaaatccctttggc	11	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75552087	C	C	75552087	1	2	102	0	1	0	0	0	0	0	0	0	12352	986	34	4		4	POR	7	75552087	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4276702	75552087	83586576	654	99867											
STYXL1	51657	broad.mit.edu	37	chr7	75659657	75659657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattcactgccccccacccCgccaaaagtttgttaactca	4	17	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75659657	A	A	75659657	1	1	102	0	1	0	0	0	0	0	0	0	15479	667	23	1		1	STYXL1	7	75659657	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	107570	75659657	83479006	655	99868											
MAGI2	9863	broad.mit.edu	37	chr7	77708175	77708175	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatatatttaggtagaagtGgagaactgatgtagttttat	10	1	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77708175	A	A	77708175	1	1	102	0	1	0	0	0	0	0	0	0	9283	1363	47	4		4	MAGI2	7	77708175	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2048518	77708175	81430488	656	99869											
PCLO	27445	broad.mit.edu	37	chr7	82544891	82544891	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagcaaggtgatctaagctCtctgtccctctacgaaattc	7	13	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82544891	A	A	82544891	3	1	102	1	0	0	0	0	1	0	0	0	11677	912	32	3	3110	3	PCLO	7	82544891	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4836716	82544891	76593772	657	99870											
SEMA3E	9723	broad.mit.edu	37	chr7	83029344	83029345	+	Frame_Shift_Ins	INS	-	T	T													tactttctcgtctctttaccINStgtcccaataaacaagacgt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83029345	T	T	83029344	7	5	102	1	0	1	1	0	0	0	0	0	14141	695	24	0	989	0	SEMA3E	7	83029344	Frame_Shift_Ins	INS	-	TCGA-38-4631-01A-01D-1753-08	484453	83029344	76109319	658	99871											
SEMA3A	10371	broad.mit.edu	37	chr7	83739928	83739928	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaagacaaaaggaaaaccaAagagtttcagcaatcagcat	8	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83739928	T	T	83739928	1	4	102	0	1	0	0	0	0	0	0	0	14137	29	1	5		5	SEMA3A	7	83739928	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	710584	83739928	75398735	659	99872											
DBF4	10926	broad.mit.edu	37	chr7	87514491	87514491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtaagtctcttaaatatGctttgagactcagaagggct	9	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87514491	T	T	87514491	1	4	102	0	1	0	0	0	0	0	0	0	4281	1334	46	3		3	DBF4	7	87514491	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3774563	87514491	71624172	660	99873											
CDK14	5218	broad.mit.edu	37	chr7	90613561	90613561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacgaatatttctggtaaGtcctttacagagtatttcta	7	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90613561	T	T	90613561	1	4	102	0	1	0	0	0	0	0	0	0	3160	1044	36	3		3	CDK14	7	90613561	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3099070	90613561	68525102	661	99874											
CALCR	799	broad.mit.edu	37	chr7	93065291	93065291	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatcagagagtgcatcacGtaatcatatatcttcccaag	7	9	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93065291	T	T	93065291	4	4	102	1	0	0	0	0	0	1	0	0	2605	1140	40	3	314	3	CALCR	7	93065291	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2451730	93065291	66073372	662	99875											
COL1A2	1278	broad.mit.edu	37	chr7	94024365	94024365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcagctttgtggatacgCggactttgttgctgcttgca	12	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94024365	A	A	94024365	2	1	102	1	0	0	0	0	0	0	0	1	3710	759	27	3		3	COL1A2	7	94024365	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	959074	94024365	65114298	663	99876											
PPP1R9A	55607	broad.mit.edu	37	chr7	94903326	94903326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacgatgtaaaaagaaaGccctctgtaaaaggaggatt	9	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94903326	T	T	94903326	1	4	102	0	1	0	0	0	0	0	0	0	12479	986	34	3		3	PPP1R9A	7	94903326	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	878961	94903326	64235337	664	99877											
PON1	5444	broad.mit.edu	37	chr7	94935712	94935712	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagctacatcaaagtactaGaagtaacacaacttgagaga	8	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94935712	T	T	94935712	1	4	102	0	1	0	0	0	0	0	0	0	12343	957	33	3		3	PON1	7	94935712	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	32386	94935712	64202951	665	99878											
DYNC1I1	1780	broad.mit.edu	37	chr7	95439665	95439665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaaaagcatacatttaGttatgttattaacttttctt	5	6	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95439665	T	T	95439665	1	4	102	0	1	0	0	0	0	0	0	0	4882	1044	36	3		3	DYNC1I1	7	95439665	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	503953	95439665	63698998	666	99879											
TRRAP	8295	broad.mit.edu	37	chr7	98508005	98508005	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgtgtggtgtcaagacAatcacgtggggcataacatc	13	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98508005	C	C	98508005	2	2	102	1	0	0	0	0	0	0	0	1	16726	117	5	5		5	TRRAP	7	98508005	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	3068340	98508005	60630658	667	99880											
CYP3A5	1577	broad.mit.edu	37	chr7	99260406	99260406	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctccctcttagtgtcccCgccagtagccctcagaagca	8	18	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99260406	T	T	99260406	1	4	102	0	1	0	0	0	0	0	0	0	4213	667	23	4		4	CYP3A5	7	99260406	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	752401	99260406	59878257	668	99881											
STAG3	10734	broad.mit.edu	37	chr7	99786203	99786203	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcttatttcaaaacacaaTgcctattatccccttctttt	1	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99786203	A	A	99786203	1	1	102	0	1	0	0	0	0	0	0	0	15362	1479	51	5		5	STAG3	7	99786203	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	525797	99786203	59352460	669	99882											
GATS	352954	broad.mit.edu	37	chr7	99816180	99816180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggccatgagctctgctGgaagtgacttgttggtgtta	14	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99816180	A	A	99816180	1	1	102	0	1	0	0	0	0	0	0	0	6326	1363	47	4		4	GATS	7	99816180	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	29977	99816180	59322483	670	99883											
GATS	352954	broad.mit.edu	37	chr7	99821629	99821629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagctggagaagctgccaCcgccggacaccacgttcagg	15	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99821629	A	A	99821629	3	1	102	1	0	0	0	0	1	0	0	0	6326	507	18	3	212	3	GATS	7	99821629	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	5449	99821629	59317034	671	99884											
ZAN	7455	broad.mit.edu	37	chr7	100391721	100391721	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggaactggaacgtctcctCctggcccttcccctttctag	8	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100391721	A	A	100391721	1	1	102	0	1	0	0	0	0	0	0	0	17640	870	30	3		3	ZAN	7	100391721	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	570092	100391721	58746942	672	99885											
MUC17	140453	broad.mit.edu	37	chr7	100684607	100684607	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacgagcaccctttcaacaActcctgctgacaccagcaca	5	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100684607	C	C	100684607	3	2	102	1	0	0	0	0	1	0	0	0	10068	43	2	5	9920	5	MUC17	7	100684607	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	292886	100684607	58454056	673	99886											
PLOD3	8985	broad.mit.edu	37	chr7	100855983	100855983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagaagcccggacttccCtgctgcccccacccaacctc	8	19	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100855983	A	A	100855983	1	1	102	0	1	0	0	0	0	0	0	0	12198	696	24	2		2	PLOD3	7	100855983	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	171376	100855983	58282680	674	99887											
LHFPL3	375612	broad.mit.edu	37	chr7	104377165	104377165	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgattttccctgatggctgGgactcagatgaagtaaaacg	11	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104377165	A	A	104377165	4	1	102	1	0	0	0	0	0	1	0	0	8838	1241	43	4	495	4	LHFPL3	7	104377165	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3521182	104377165	54761498	675	99888											
CDHR3	222256	broad.mit.edu	37	chr7	105662892	105662892	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatcatcaccacgacccccAgggtaagggctttaggacct	9	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105662892	T	T	105662892	3	4	102	1	0	0	0	0	1	0	0	0	3150	179	7	5	2128	5	CDHR3	7	105662892	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1285727	105662892	53475771	676	99889											
CTTNBP2	83992	broad.mit.edu	37	chr7	117385855	117385855	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagcatgcctttaggttAtcacaggcaatttgctgaaa	10	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117385855	C	C	117385855	1	2	102	0	1	0	0	0	0	0	0	0	4079	464	16	5		5	CTTNBP2	7	117385855	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	11722963	117385855	41752808	677	99890											
CTTNBP2	83992	broad.mit.edu	37	chr7	117431569	117431569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataataaccttgagttgggGgtgtggtggagaaggagttt	16	2	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117431569	T	T	117431569	3	4	102	1	0	0	0	0	1	0	0	0	4079	1232	43	2	3390	2	CTTNBP2	7	117431569	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	45714	117431569	41707094	678	99891											
KCND2	3751	broad.mit.edu	37	chr7	119915119	119915119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcgcaggcgagagaacGccgagcgcctgcaggacgac	16	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119915119	T	T	119915119	3	4	102	1	0	0	0	0	1	0	0	0	8089	1087	38	3	435	3	KCND2	7	119915119	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2483550	119915119	39223544	679	99892											
C7orf58	79974	broad.mit.edu	37	chr7	120704314	120704314	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacagattaccagaaatacAgcagccactttgcagaaagg	8	9	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120704314	C	C	120704314	3	2	102	1	0	0	0	0	1	0	0	0	2430	188	7	5	577	5	C7orf58	7	120704314	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	789195	120704314	38434349	680	99893											
PTPRZ1	5803	broad.mit.edu	37	chr7	121597076	121597076	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataaaaatatttcaaactgTacggtcaccagtgcacagtt	7	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121597076	C	C	121597076	1	2	102	0	1	0	0	0	0	0	0	0	12922	1653	57	5		5	PTPRZ1	7	121597076	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	892762	121597076	37541587	681	99894											
AASS	10157	broad.mit.edu	37	chr7	121755132	121755132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtagagtccttacttgtGtggtaatgcagggcagcctt	13	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121755132	T	T	121755132	3	4	102	1	0	0	0	0	1	0	0	0	24	1377	48	3	1805	3	AASS	7	121755132	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	158056	121755132	37383531	682	99895											
SLC13A1	6561	broad.mit.edu	37	chr7	122755762	122755762	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaagaaagcctacaggaGattagaatcctattgtagga	10	7	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122755762	A	A	122755762	1	1	102	0	1	0	0	0	0	0	0	0	14504	957	33	4		4	SLC13A1	7	122755762	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1000630	122755762	36382901	683	99896											
SLC13A1	6561	broad.mit.edu	37	chr7	122811998	122811998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgattatttactttggtgGggaaaaataacattgcacaa	9	5	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122811998	T	T	122811998	1	4	102	0	1	0	0	0	0	0	0	0	14504	1247	43	2		2	SLC13A1	7	122811998	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	56236	122811998	36326665	684	99897											
PAX4	5078	broad.mit.edu	37	chr7	127253908	127253908	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtctcagagccactatggGgagtgaggacagctggagcc	16	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127253908	A	A	127253908	3	1	102	1	0	0	0	0	1	0	0	0	11575	1232	43	4	615	4	PAX4	7	127253908	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4441910	127253908	31884755	685	99898											
SND1	27044	broad.mit.edu	37	chr7	127343141	127343141	+	Intron	DEL	G	-	-													tcgtggcatgtgtgttttttGgaaggcttagtgtggggcga							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127343141	-	-	127343141	6	5	102	0	1	1	0	1	0	0	0	0	14958	1363	47	0		0	SND1	7	127343141	Intron	DEL	G	TCGA-38-4631-01A-01D-1753-08	89233	127343141	31795522	686	99899											
METTL2B	55798	broad.mit.edu	37	chr7	128116825	128116825	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccggctccggtgtcatggcCggctcctaccctgaaggtgc	13	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128116825	T	T	128116825	2	4	102	1	0	0	0	0	0	0	0	1	9593	639	23	4		4	METTL2B	7	128116825	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	773684	128116825	31021838	687	99900											
FLNC	2318	broad.mit.edu	37	chr7	128471053	128471053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtccataggtcagtgccGggggcgagggcacgggcgct	19	11	1	0	rs79489893	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128471053	T	T	128471053	1	4	102	0	1	0	0	0	0	0	0	0	5993	1131	39	1		1	FLNC	7	128471053	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	354228	128471053	30667610	688	99901											
SMO	6608	broad.mit.edu	37	chr7	128845342	128845342	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcaaagaggtcttggtgGgggtccccagggaagggtca	20	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128845342	C	C	128845342	1	2	102	0	1	0	0	0	0	0	0	0	14914	1247	43	4		4	SMO	7	128845342	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	374289	128845342	30293321	689	99902											
CPA1	1357	broad.mit.edu	37	chr7	130025175	130025175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagaaccagtccctgacCaggatgagctggtaggcact	11	11	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130025175	A	A	130025175	3	1	102	1	0	0	0	0	1	0	0	0	3821	595	21	2	1006	2	CPA1	7	130025175	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1179833	130025175	29113488	690	99903											
PLXNA4	91584	broad.mit.edu	37	chr7	131830040	131830040	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatccacaaacttctgcAgtgtgccctggagaggcagg	13	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131830040	C	C	131830040	3	2	102	1	0	0	0	0	1	0	0	0	12217	188	7	5	637	5	PLXNA4	7	131830040	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1804865	131830040	27308623	691	99904											
PLXNA4	91584	broad.mit.edu	37	chr7	131913111	131913111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgacccttaccagcacGttgtactgagagacggagat	10	13	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131913111	T	T	131913111	3	4	102	1	0	0	0	0	1	0	0	0	12217	1136	40	3	4070	3	PLXNA4	7	131913111	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	83071	131913111	27225552	692	99905											
NUP205	23165	broad.mit.edu	37	chr7	135310997	135310997	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactcctcaggcatttctcAcaagagtggcaaagatacag	8	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135310997	T	T	135310997	3	4	102	1	0	0	0	0	1	0	0	0	10854	159	6	5	4811	5	NUP205	7	135310997	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3397886	135310997	23827666	693	99906											
SLC13A4	26266	broad.mit.edu	37	chr7	135376426	135376426	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagcatagctgaggagaagGgtcaggaattttcaggagta	14	5	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135376426	C	C	135376426	1	2	102	0	1	0	0	0	0	0	0	0	14507	1247	43	4		4	SLC13A4	7	135376426	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	65429	135376426	23762237	694	99907											
CHRM2	1129	broad.mit.edu	37	chr7	136700192	136700192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggtacggctattgcaGccttctatttgccagtgatc	9	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700192	T	T	136700192	3	4	102	1	0	0	0	0	1	0	0	0	3408	971	34	3	582	3	CHRM2	7	136700192	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1323766	136700192	22438471	695	99908											
DGKI	9162	broad.mit.edu	37	chr7	137266530	137266530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtgatatacaaacaaaaGggaacatgcaaaacacctgc	7	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137266530	T	T	137266530	1	4	102	0	1	0	0	0	0	0	0	0	4511	1015	35	2		2	DGKI	7	137266530	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	566338	137266530	21872133	696	99909											
DGKI	9162	broad.mit.edu	37	chr7	137363342	137363342	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctcctctccaaggtagcaGaggtctcccgagacgttggt	11	12	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137363342	T	T	137363342	2	4	102	1	0	0	0	0	0	0	0	1	4511	929	33	3		3	DGKI	7	137363342	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	96812	137363342	21775321	697	99910											
CREB3L2	64764	broad.mit.edu	37	chr7	137612987	137612987	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagctgtgctcagcctggatGagaggcgccggggacgtcgg	18	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137612987	A	A	137612987	2	1	102	1	0	0	0	0	0	0	0	1	3889	1277	45	4		4	CREB3L2	7	137612987	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	249645	137612987	21525676	698	99911											
PRSS37	136242	broad.mit.edu	37	chr7	141536247	141536247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacatatttgtaaacattgGtgtagatgccgacgtcccct	8	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141536247	T	T	141536247	3	4	102	1	0	0	0	0	1	0	0	0	12732	1261	44	3	55	3	PRSS37	7	141536247	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3923260	141536247	17602416	699	99912											
MGAM	8972	broad.mit.edu	37	chr7	141750516	141750516	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaccgcttggaggtgaataTttcacaatcaacctacaagg	9	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141750516	C	C	141750516	3	2	102	1	0	0	0	0	1	0	0	0	9634	1493	52	5	2747	5	MGAM	7	141750516	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	214269	141750516	17388147	700	99913											
KEL	3792	broad.mit.edu	37	chr7	142651477	142651477	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatctggaggaaggaaatgtCagtcacaggtgccagaggtc	15	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142651477	T	T	142651477	1	4	102	0	1	0	0	0	0	0	0	0	8212	841	29	4		4	KEL	7	142651477	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	900961	142651477	16487186	701	99914											
CLCN1	1180	broad.mit.edu	37	chr7	143028571	143028571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcctggtatttgtttcCctgcagtagttatgtccaag	10	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143028571	A	A	143028571	1	1	102	0	1	0	0	0	0	0	0	0	3493	638	22	2		2	CLCN1	7	143028571	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	377094	143028571	16110092	702	99915											
OR6B1	135946	broad.mit.edu	37	chr7	143701028	143701028	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatggaaaaatatagctgGgccatggagtctgatcaaat	11	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143701028	T	T	143701028	1	4	102	0	1	0	0	0	0	0	0	0	11281	1247	43	2		2	OR6B1	7	143701028	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	672457	143701028	15437635	703	99916											
ARHGEF5	7984	broad.mit.edu	37	chr7	144070359	144070359	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaatctacctgagccagaaGattgagtttgagtgcaaagt	10	7	1	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144070359	C	C	144070359	3	2	102	1	0	0	0	0	1	0	0	0	911	933	33	4	4156	4	ARHGEF5	7	144070359	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	369331	144070359	15068304	704	99917											
NOBOX	135935	broad.mit.edu	37	chr7	144101617	144101617	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaaactgctggaattaCaggcgtgagccacagcgctc	10	13	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144101617	A	A	144101617	1	1	102	0	1	0	0	0	0	0	0	0	10607	493	17	3		3	NOBOX	7	144101617	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	31258	144101617	15037046	705	99918											
TPK1	27010	broad.mit.edu	37	chr7	144320281	144320281	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtctttttcttctatcTtcttttggagcattttaagg	6	6	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144320281	A	A	144320281	3	1	102	1	0	0	0	0	1	0	0	0	16528	1609	56	5	415	5	TPK1	7	144320281	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	218664	144320281	14818382	706	99919											
CNTNAP2	26047	broad.mit.edu	37	chr7	147674913	147674913	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaattcatatgtctaatGcagcctcctcattctttttc	4	10	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147674913	T	T	147674913	1	4	102	0	1	0	0	0	0	0	0	0	3679	1334	46	3		3	CNTNAP2	7	147674913	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3354632	147674913	11463750	707	99920											
CNTNAP2	26047	broad.mit.edu	37	chr7	147844493	147844493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggcttagatgatttttccTctccctgctttgtttgtcgt	8	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147844493	A	A	147844493	1	1	102	0	1	0	0	0	0	0	0	0	3679	1566	54	5		5	CNTNAP2	7	147844493	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	169580	147844493	11294170	708	99921											
EZH2	2146	broad.mit.edu	37	chr7	148508784	148508784	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataaaaatcccccagcctGccacgtcagatggtgccagc	9	14	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148508784	T	T	148508784	3	4	102	1	0	0	0	0	1	0	0	0	5377	1319	46	3	395	3	EZH2	7	148508784	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	664291	148508784	10629879	709	99922											
ZNF398	57541	broad.mit.edu	37	chr7	148851299	148851299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccagctggagggcaagtGggccgtgctgggaaccctgc	17	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148851299	T	T	148851299	3	4	102	1	0	0	0	0	1	0	0	0	18012	1357	47	2	293	2	ZNF398	7	148851299	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	342515	148851299	10287364	710	99923											
SSPO	23145	broad.mit.edu	37	chr7	149502693	149502693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattctcccttgggcccagGggtggctcggatgctggggt	17	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149502693	T	T	149502693	1	4	102	0	1	0	0	0	0	0	0	0	15307	1247	43	2		2	SSPO	7	149502693	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	651394	149502693	9635970	711	99924											
ABP1	26	broad.mit.edu	37	chr7	150553925	150553925	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggcccctgccagggcccTgctacatgcgagcactgtcc	13	16	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150553925	G	G	150553925	3	3	102	1	0	0	0	0	1	0	0	0	98	1580	55	5	369	5	ABP1	7	150553925	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1051232	150553925	8584738	712	99925											
RHEB	6009	broad.mit.edu	37	chr7	151174501	151174502	+	Splice_Site	DNP	CC	GA	GA													aggaaagatagaatattcatCctgtggggaaaaaaaattat							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	151174502	GA	GA	151174501	5	3	102	1	0	0	0	0	0	0	1	0	13437	869	30	4	381	4	RHEB	7	151174501	Splice_Site	DNP	CC	TCGA-38-4631-01A-01D-1753-08	620576	151174501	7964162	713	99926											
GALNTL5	168391	broad.mit.edu	37	chr7	151704840	151704840	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctataagttattactaatttAatataattttgaggaaacta	4	3	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151704840	T	T	151704840	1	4	102	0	1	0	0	0	0	0	0	0	6286	377	13	5		5	GALNTL5	7	151704840	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	530339	151704840	7433823	714	99927											
MLL3	58508	broad.mit.edu	37	chr7	151926959	151926959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatgttactactaaaacCaaataaaaattcaatacata	2	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151926959	A	A	151926959	1	1	102	0	1	0	0	0	0	0	0	0	9715	609	21	2		2	MLL3	7	151926959	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	222119	151926959	7211704	715	99928											
DPP6	1804	broad.mit.edu	37	chr7	154143394	154143394	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccttgatcgtcacctcGgtcatacttctgacaccagg	8	14	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154143394	T	T	154143394	2	4	102	1	0	0	0	0	0	0	0	1	4770	1103	39	1		1	DPP6	7	154143394	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	2216435	154143394	4995269	716	99929											
DPP6	1804	broad.mit.edu	37	chr7	154684101	154684101	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaaacagcatctgtacCggtccatcatcaacttcttc	5	15	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154684101	A	A	154684101	2	1	102	1	0	0	0	0	0	0	0	1	4770	643	23	1		1	DPP6	7	154684101	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	540707	154684101	4454562	717	99930											
RBM33	155435	broad.mit.edu	37	chr7	155504087	155504087	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgccacccgtgactccacAgcagcccaagaacatacaca	6	19	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155504087	G	G	155504087	3	3	102	1	0	0	0	0	1	0	0	0	13238	188	7	5	1169	5	RBM33	7	155504087	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	819986	155504087	3634576	718	99931											
PTPRN2	5799	broad.mit.edu	37	chr7	157984996	157984996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaagccaaccccggccCggggaggaagtggaagggtc	17	10	0	0	rs34989053		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157984996	A	A	157984996	1	1	102	0	1	0	0	0	0	0	0	0	12916	667	23	1		1	PTPRN2	7	157984996	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2480909	157984996	1153667	719	99932											
ARHGEF10	9639	broad.mit.edu	37	chr8	1807965	1807965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctggcatgggatgatgGtgggagctcatacctgcttc	15	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1807965	T	T	1807965	1	4	102	0	1	0	0	0	0	0	0	0	896	1276	44	3		3	ARHGEF10	8	1807965	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08		1807965	144556057	720	99933											
ARHGEF10	9639	broad.mit.edu	37	chr8	1876530	1876530	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggcctttaagggtcaggttCcagcgtattatggaagccgc	13	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1876530	G	G	1876530	1	3	102	0	1	0	0	0	0	0	0	0	896	870	30	4		4	ARHGEF10	8	1876530	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	68565	1876530	144487492	721	99934											
CSMD1	64478	broad.mit.edu	37	chr8	2824066	2824066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttcatagtaacgtctgaGtctaccatgatgtctgctta	7	8	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2824066	A	A	2824066	1	1	102	0	1	0	0	0	0	0	0	0	3978	1044	36	4		4	CSMD1	8	2824066	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	947536	2824066	143539956	722	99935											
CSMD1	64478	broad.mit.edu	37	chr8	3062958	3062958	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctagcatacttgtttatCaaatgacagaaaaattaaca	5	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3062958	G	G	3062958	1	3	102	0	1	0	0	0	0	0	0	0	3978	841	29	4		4	CSMD1	8	3062958	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	238892	3062958	143301064	723	99936											
CSMD1	64478	broad.mit.edu	37	chr8	3443692	3443692	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgtggtcactccaagcagcGagcgtctctgtaactctctg	10	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3443692	C	C	3443692	2	2	102	1	0	0	0	0	0	0	0	1	3978	1045	37	4		4	CSMD1	8	3443692	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	380734	3443692	142920330	724	99937											
CSMD1	64478	broad.mit.edu	37	chr8	3565937	3565937	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaggaaagggactcacaGacagagtttttatggcttcc	11	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3565937	T	T	3565937	2	4	102	1	0	0	0	0	0	0	0	1	3978	956	33	3		3	CSMD1	8	3565937	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	122245	3565937	142798085	725	99938											
RP1L1	94137	broad.mit.edu	37	chr8	10465982	10465982	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccttctgcctctggggCctctacatcttctgactctg	7	16	7	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10465982	A	A	10465982	3	1	102	1	0	0	0	0	1	0	0	0	13644	739	26	3	1580	3	RP1L1	8	10465982	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	6900045	10465982	135898040	726	99939											
RP1L1	94137	broad.mit.edu	37	chr8	10467184	10467184	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggcggcttttccaaaccaGgctcaagctgggagccactc	12	14	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10467184	A	A	10467184	3	1	102	1	0	0	0	0	1	0	0	0	13644	1000	35	4	2782	4	RP1L1	8	10467184	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1202	10467184	135896838	727	99940											
RP1L1	94137	broad.mit.edu	37	chr8	10468596	10468597	+	Missense_Mutation	DNP	CC	AA	AA													tgtcccgcctgagctggctcCcccaggccttccagagaatg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	10468597	AA	AA	10468596	3	1	102	1	0	0	0	0	1	0	0	0	13644	610	22	2	4194	2	RP1L1	8	10468596	Missense_Mutation	DNP	CC	TCGA-38-4631-01A-01D-1753-08	1412	10468596	135895426	728	99941											
GATA4	2626	broad.mit.edu	37	chr8	11616067	11616067	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccctgggctcccaggggCcggcctcctctgcctggtaa	14	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11616067	A	A	11616067	1	1	102	0	1	0	0	0	0	0	0	0	6318	754	26	3		3	GATA4	8	11616067	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	1147471	11616067	134747955	729	99942											
DEFB136	613210	broad.mit.edu	37	chr8	11832107	11832107	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcagaaagacagaggttcAtggccgaagagggcacagag	15	7	1	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11832107	T	T	11832107	3	4	102	1	0	0	0	0	1	0	0	0	4460	231	8	5	240	5	DEFB136	8	11832107	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	216040	11832107	134531915	730	99943											
DLC1	10395	broad.mit.edu	37	chr8	13072130	13072130	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgttctgccaggcacacaCcggcctaggtgatgttttct	11	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13072130	G	G	13072130	1	3	102	0	1	0	0	0	0	0	0	0	4590	522	18	4		4	DLC1	8	13072130	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1240023	13072130	133291892	731	99944											
MTMR7	9108	broad.mit.edu	37	chr8	17157479	17157479	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctcaaatcctccaccccGgactcttggtcactgttggc	8	16	3	0	rs146319076	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17157479	C	C	17157479	2	2	102	1	0	0	0	0	0	0	0	1	10042	1103	39	4		4	MTMR7	8	17157479	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	4085349	17157479	129206543	732	99945											
SH2D4A	63898	broad.mit.edu	37	chr8	19221651	19221651	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcacgagaagactacaagAggttatccctcggggcccag	12	11	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19221651	T	T	19221651	3	4	102	1	0	0	0	0	1	0	0	0	14348	295	11	5	847	5	SH2D4A	8	19221651	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	2064172	19221651	127142371	733	99946											
SLC18A1	6570	broad.mit.edu	37	chr8	20008258	20008258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcaagaaagctagacctGtggaaggacacagatcctta	11	9	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20008258	T	T	20008258	1	4	102	0	1	0	0	0	0	0	0	0	14538	1392	48	3		3	SLC18A1	8	20008258	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	786607	20008258	126355764	734	99947											
PIWIL2	55124	broad.mit.edu	37	chr8	22144955	22144955	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctagatggagcagcagttaCtgggtaactagcacctgttg	13	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22144955	A	A	22144955	1	1	102	0	1	0	0	0	0	0	0	0	12053	580	20	3		3	PIWIL2	8	22144955	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2136697	22144955	124219067	735	99948											
TNFRSF10B	8795	broad.mit.edu	37	chr8	22881835	22881835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctacagtccagtactgacCccgaccaccagccagctctg	7	18	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22881835	A	A	22881835	1	1	102	0	1	0	0	0	0	0	0	0	16404	638	22	2		2	TNFRSF10B	8	22881835	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	736880	22881835	123482187	736	99949											
PTK2B	2185	broad.mit.edu	37	chr8	27310768	27310768	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagattcacagttctcagAtagaatccagttcagtgtcc	8	9	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27310768	T	T	27310768	1	4	102	0	1	0	0	0	0	0	0	0	12869	348	12	5		5	PTK2B	8	27310768	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	4428933	27310768	119053254	737	99950											
C8orf80	389643	broad.mit.edu	37	chr8	27884422	27884433	+	Intron	DEL	ACCACAGCCAGG	-	-													tttaaattcaggaaggagtaAccacagccagggctgtctgc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27884433	-	-	27884422	6	5	102	0	1	1	0	1	0	0	0	0	2465	58	2	0		0	C8orf80	8	27884422	Intron	DEL	ACCACAGCCAGG	TCGA-38-4631-01A-01D-1753-08	573654	27884422	118479600	738	99951											
WRN	7486	broad.mit.edu	37	chr8	30921859	30921859	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacatggagtggccaccattAtacaatagagggaaacttgg	12	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30921859	T	T	30921859	3	4	102	1	0	0	0	0	1	0	0	0	17529	446	16	5	274	5	WRN	8	30921859	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3037437	30921859	115442163	739	99952											
BRF2	55290	broad.mit.edu	37	chr8	37704277	37704277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggtgataagagcaagaCtccaagaaaaaaaaaaagag	10	6	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37704277	A	A	37704277	1	1	102	0	1	0	0	0	0	0	0	0	1520	580	20	3		3	BRF2	8	37704277	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	6782418	37704277	108659745	740	99953											
ADAM2	2515	broad.mit.edu	37	chr8	39607214	39607214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgcatttgtcagtagtaCaatcataacccaagtatgaa	6	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39607214	A	A	39607214	3	1	102	1	0	0	0	0	1	0	0	0	241	478	17	3	376	3	ADAM2	8	39607214	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1902937	39607214	106756808	741	99954											
ANK1	286	broad.mit.edu	37	chr8	41615424	41615424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggttagggccttccacaGgcaggagccctgggggagtt	16	10	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41615424	T	T	41615424	1	4	102	0	1	0	0	0	0	0	0	0	620	1015	35	2		2	ANK1	8	41615424	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2008210	41615424	104748598	742	99955											
AP3M2	10947	broad.mit.edu	37	chr8	42012412	42012412	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagatcttttttgtggccgtGatccagacggaggtcccccc	11	12	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42012412	T	T	42012412	2	4	102	1	0	0	0	0	0	0	0	1	750	1277	45	3		3	AP3M2	8	42012412	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	396988	42012412	104351610	743	99956											
MCM4	4173	broad.mit.edu	37	chr8	48878870	48878870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccgggtggagatggaccGcggccgcattgcagagccca	16	13	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48878870	T	T	48878870	3	4	102	1	0	0	0	0	1	0	0	0	9482	1087	38	3	986	3	MCM4	8	48878870	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	6866458	48878870	97485152	744	99957											
SNAI2	6591	broad.mit.edu	37	chr8	49832627	49832627	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattttctagactgggcatcGcagtgcagctgcttatgttt	11	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49832627	C	C	49832627	3	2	102	1	0	0	0	0	1	0	0	0	14941	1079	38	4	361	4	SNAI2	8	49832627	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	953757	49832627	96531395	745	99958											
C8orf22	492307	broad.mit.edu	37	chr8	49987884	49987884	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgccccagctattccaGgactcttctccattgtaaga	7	14	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49987884	A	A	49987884	1	1	102	0	1	0	0	0	0	0	0	0	2444	1015	35	4		4	C8orf22	8	49987884	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	155257	49987884	96376138	746	99959											
PXDNL	137902	broad.mit.edu	37	chr8	52370125	52370125	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcggaatttctggccatGcactgatagacaccttggtc	10	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52370125	T	T	52370125	4	4	102	1	0	0	0	0	0	1	0	0	12956	1311	46	3	3536	3	PXDNL	8	52370125	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2382241	52370125	93993897	747	99960											
RP1	6101	broad.mit.edu	37	chr8	55534687	55534687	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttttaggttcccagccTccaggcagtgatcctgagct	9	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55534687	G	G	55534687	3	3	102	1	0	0	0	0	1	0	0	0	13643	1551	54	5	632	5	RP1	8	55534687	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	3164562	55534687	90829335	748	99961											
DNAJC5B	85479	broad.mit.edu	37	chr8	66963823	66963823	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaagacagcggactctgtCaacaacaggagaagctctat	9	11	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66963823	A	A	66963823	4	1	102	1	0	0	0	0	0	1	0	0	4691	838	29	3	43	3	DNAJC5B	8	66963823	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	11429136	66963823	79400199	749	99962											
TRIM55	84675	broad.mit.edu	37	chr8	67061784	67061784	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaaaatatcctacAtaagtaaatgttcttctttc	3	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67061784	G	G	67061784	1	3	102	0	1	0	0	0	0	0	0	0	16654	232	8	5		5	TRIM55	8	67061784	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	97961	67061784	79302238	750	99963											
CSPP1	79848	broad.mit.edu	37	chr8	68024301	68024301	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagaggaacaagagacgGtaatgaaaggtttgcattta	11	5	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68024301	T	T	68024301	5	4	102	1	0	0	0	0	0	0	1	0	3996	1275	44	3	1362	3	CSPP1	8	68024301	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	962517	68024301	78339721	751	99964											
TRPA1	8989	broad.mit.edu	37	chr8	72973718	72973718	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catacgcgattccggttgatCcacagggtctttgttatctt	9	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72973718	G	G	72973718	1	3	102	0	1	0	0	0	0	0	0	0	16702	870	30	4		4	TRPA1	8	72973718	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4949417	72973718	73390304	752	99965											
ZFHX4	79776	broad.mit.edu	37	chr8	77763199	77763199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagtaaagaatgaggagCagaaaccgactaaagaaccc	11	7	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763199	A	A	77763199	3	1	102	1	0	0	0	0	1	0	0	0	17761	711	25	3	4076	3	ZFHX4	8	77763199	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4789481	77763199	68600823	753	99966											
ZFHX4	79776	broad.mit.edu	37	chr8	77768313	77768313	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaaagattacttggctccGaccacggttcggcagctgat	12	10	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77768313	T	T	77768313	2	4	102	1	0	0	0	0	0	0	0	1	17761	1045	37	3		3	ZFHX4	8	77768313	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	5114	77768313	68595709	754	99967											
ZNF704	619279	broad.mit.edu	37	chr8	81733894	81733894	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttactcacataaaacatcaCctttgtacgactactgcaga	4	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81733894	A	A	81733894	1	1	102	0	1	0	0	0	0	0	0	0	18234	522	18	3		3	ZNF704	8	81733894	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3965581	81733894	64630128	755	99968											
PMP2	5375	broad.mit.edu	37	chr8	82357047	82357047	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaagagaaacattaaagAttaccttggtctttctattg	7	5	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82357047	G	G	82357047	1	3	102	0	1	0	0	0	0	0	0	0	12233	348	12	5		5	PMP2	8	82357047	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	623153	82357047	64006975	756	99969											
IMPA1	3612	broad.mit.edu	37	chr8	82586002	82586002	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacacctggagaattccaTaggtgaatattaaaaaacaa	6	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82586002	C	C	82586002	1	2	102	0	1	0	0	0	0	0	0	0	7792	1421	49	5		5	IMPA1	8	82586002	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	228955	82586002	63778020	757	99970											
ZFAND1	79752	broad.mit.edu	37	chr8	82627319	82627319	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggtaagatgtatgttgatCtgtcttcagtctctcattga	10	6	5	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82627319	A	A	82627319	3	1	102	1	0	0	0	0	1	0	0	0	17752	913	32	3	705	3	ZFAND1	8	82627319	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	41317	82627319	63736703	758	99971											
CA3	761	broad.mit.edu	37	chr8	86356318	86356318	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaagaagccctgaagcAgcgcgatgggatcgctgtga	13	8	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86356318	C	C	86356318	3	2	102	1	0	0	0	0	1	0	0	0	2543	188	7	5	421	5	CA3	8	86356318	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3728999	86356318	60007704	759	99972											
CNGB3	54714	broad.mit.edu	37	chr8	87670049	87670049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgtattccttctggtgCcacgtcttcagcactgacct	8	13	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87670049	A	A	87670049	1	1	102	0	1	0	0	0	0	0	0	0	3633	754	26	3		3	CNGB3	8	87670049	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1313731	87670049	58693973	760	99973											
NECAB1	64168	broad.mit.edu	37	chr8	91963412	91963412	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggaaactccagaactcaCatctacaatgctagttcctg	6	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91963412	T	T	91963412	3	4	102	1	0	0	0	0	1	0	0	0	10399	478	17	4	1056	4	NECAB1	8	91963412	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4293363	91963412	54400610	761	99974											
SLC26A7	115111	broad.mit.edu	37	chr8	92352809	92352809	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcccccagtccctctccactCcagttgtatcattgcactgt	6	17	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92352809	T	T	92352809	1	4	102	0	1	0	0	0	0	0	0	0	14636	870	30	4		4	SLC26A7	8	92352809	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	389397	92352809	54011213	762	99975											
CDH17	1015	broad.mit.edu	37	chr8	95158253	95158253	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgctgatcatcatcagtAgcctcgaaaatgagacttcc	8	10	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95158253	G	G	95158253	2	3	102	1	0	0	0	0	0	0	0	1	3132	407	15	5		5	CDH17	8	95158253	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	2805444	95158253	51205769	763	99976											
C8orf37	157657	broad.mit.edu	37	chr8	96259924	96259924	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatagttctccagctacacTggcaggcatatgcccgtgtt	9	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96259924	A	A	96259924	3	1	102	1	0	0	0	0	1	0	0	0	2449	1580	55	5	82	5	C8orf37	8	96259924	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1101671	96259924	50104098	764	99977											
GDF6	392255	broad.mit.edu	37	chr8	97156857	97156857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccacattattgcccgcGtcgatgtatagaatgctgat	9	9	0	3	rs138730867	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97156857	T	T	97156857	3	4	102	1	0	0	0	0	1	0	0	0	6381	1136	40	3	69	3	GDF6	8	97156857	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	896933	97156857	49207165	765	99978											
RPL30	6156	broad.mit.edu	37	chr8	99054345	99054345	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatttataaaaccagacctAgggaaagaactaggtttggg	11	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99054345	T	T	99054345	1	4	102	0	1	0	0	0	0	0	0	0	13691	435	15	5		5	RPL30	8	99054345	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1897488	99054345	47309677	766	99979											
SNX31	169166	broad.mit.edu	37	chr8	101625092	101625092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattccctaaacccttaaccCagtgactgagaacagtggta	7	11	0	2	rs138865886	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101625092	A	A	101625092	1	1	102	0	1	0	0	0	0	0	0	0	15015	609	21	2		2	SNX31	8	101625092	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2570747	101625092	44738930	767	99980											
UBR5	51366	broad.mit.edu	37	chr8	103359295	103359295	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggatcctccaccacttcCacccactccagaactccagc	5	19	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103359295	A	A	103359295	4	1	102	1	0	0	0	0	0	1	0	0	17031	603	21	2	8203	2	UBR5	8	103359295	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1734203	103359295	43004727	768	99981											
RIMS2	9699	broad.mit.edu	37	chr8	104930762	104930762	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgttatttataattgcattCatcagagatcagatgaagta	7	5	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104930762	T	T	104930762	1	4	102	0	1	0	0	0	0	0	0	0	13479	841	29	4		4	RIMS2	8	104930762	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1571467	104930762	41433260	769	99982											
ANGPT1	284	broad.mit.edu	37	chr8	108306101	108306101	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataccaagattcatcataTagtatggagaagataacttc	6	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108306101	G	G	108306101	1	3	102	0	1	0	0	0	0	0	0	0	610	1421	49	5		5	ANGPT1	8	108306101	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3375339	108306101	38057921	770	99983											
PKHD1L1	93035	broad.mit.edu	37	chr8	110408305	110408305	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattcgaggtggcaccacGctgacaataagtgggcgttt	13	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110408305	T	T	110408305	2	4	102	1	0	0	0	0	0	0	0	1	12067	1074	38	3		3	PKHD1L1	8	110408305	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	2102204	110408305	35955717	771	99984											
PKHD1L1	93035	broad.mit.edu	37	chr8	110432916	110432916	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatggctgtgagctttggGcaggtaagcctagaattttg	14	5	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110432916	T	T	110432916	2	4	102	1	0	0	0	0	0	0	0	1	12067	1190	42	3		3	PKHD1L1	8	110432916	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	24611	110432916	35931106	772	99985											
PKHD1L1	93035	broad.mit.edu	37	chr8	110453508	110453508	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttattctttctagggtcCatcccttgcaatgttacatc	5	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110453508	A	A	110453508	2	1	102	1	0	0	0	0	0	0	0	1	12067	581	21	2		2	PKHD1L1	8	110453508	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	20592	110453508	35910514	773	99986											
CSMD3	114788	broad.mit.edu	37	chr8	113308008	113308008	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcttgcctaacaaaaacTagaattattccaaagatcag	4	9	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113308008	C	C	113308008	1	2	102	0	1	0	0	0	0	0	0	0	3980	1537	53	5		5	CSMD3	8	113308008	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	2854500	113308008	33056014	774	99987											
CSMD3	114788	broad.mit.edu	37	chr8	113326281	113326281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggactttgaatatttggtCctttgggaagaaaataaaac	9	5	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113326281	A	A	113326281	3	1	102	1	0	0	0	0	1	0	0	0	3980	869	30	3	3665	3	CSMD3	8	113326281	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	18273	113326281	33037741	775	99988											
CSMD3	114788	broad.mit.edu	37	chr8	113516078	113516078	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcactccgaaaagccaaaTgcattgtatttgagctgctt	7	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113516078	A	A	113516078	3	1	102	1	0	0	0	0	1	0	0	0	3980	1464	51	5	6267	5	CSMD3	8	113516078	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	189797	113516078	32847944	776	99989											
CSMD3	114788	broad.mit.edu	37	chr8	113563004	113563004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccttcaggaataagagatCcactaatttcctttaaaagc	5	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113563004	A	A	113563004	3	1	102	1	0	0	0	0	1	0	0	0	3980	855	30	3	6843	3	CSMD3	8	113563004	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	46926	113563004	32801018	777	99990											
CSMD3	114788	broad.mit.edu	37	chr8	113585692	113585692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaatatacatgcagcacCccagtgtttggccattttac	6	10	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113585692	A	A	113585692	1	1	102	0	1	0	0	0	0	0	0	0	3980	638	22	2		2	CSMD3	8	113585692	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	22688	113585692	32778330	778	99991											
CSMD3	114788	broad.mit.edu	37	chr8	113694868	113694868	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcattatgtccaaatgctTtagaataatatgcaaagaaa	5	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113694868	A	A	113694868	1	1	102	0	1	0	0	0	0	0	0	0	3980	1856	64	5		5	CSMD3	8	113694868	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	109176	113694868	32669154	779	99992											
TRPS1	7227	broad.mit.edu	37	chr8	116599310	116599310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagggccccagacttctctCcgccagctggcgccccctgc	12	19	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116599310	A	A	116599310	3	1	102	1	0	0	0	0	1	0	0	0	16718	855	30	3	1278	3	TRPS1	8	116599310	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2904442	116599310	29764712	780	99993											
COLEC10	10584	broad.mit.edu	37	chr8	120118127	120118127	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatccctaacccactgcagGattcggggtggaatgctagc	12	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120118127	A	A	120118127	2	1	102	1	0	0	0	0	0	0	0	1	3742	1165	41	4		4	COLEC10	8	120118127	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3518817	120118127	26245895	781	99994											
FAM83A	84985	broad.mit.edu	37	chr8	124206450	124206450	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagggctgagtgaggtgcaGaccagctcccgctgctcaga	14	12	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124206450	C	C	124206450	1	2	102	0	1	0	0	0	0	0	0	0	5686	957	33	4		4	FAM83A	8	124206450	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4088323	124206450	22157572	782	99995											
FER1L6	654463	broad.mit.edu	37	chr8	125023115	125023115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctactatgcaaatctagGggaatgagacctcattttgc	8	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125023115	T	T	125023115	1	4	102	0	1	0	0	0	0	0	0	0	5872	1247	43	2		2	FER1L6	8	125023115	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	816665	125023115	21340907	783	99996											
ZNF572	137209	broad.mit.edu	37	chr8	125989981	125989981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcatcggaaaattcacGtagaaaagccttttgagtct	9	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125989981	T	T	125989981	3	4	102	1	0	0	0	0	1	0	0	0	18131	1145	40	3	1477	3	ZNF572	8	125989981	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	966866	125989981	20374041	784	99997											
ASAP1	50807	broad.mit.edu	37	chr8	131130876	131130876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaggtcttccttgaaaaCctatgatctacatactttgc	6	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131130876	A	A	131130876	3	1	102	1	0	0	0	0	1	0	0	0	1014	506	18	3	1784	3	ASAP1	8	131130876	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	5140895	131130876	15233146	785	99998											
COL22A1	169044	broad.mit.edu	37	chr8	139606332	139606332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggctcccccatggggcCggcccggcctggaagcccat	13	18	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139606332	A	A	139606332	3	1	102	1	0	0	0	0	1	0	0	0	3713	652	23	1	349	1	COL22A1	8	139606332	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	8475456	139606332	6757690	786	99999											
COL22A1	169044	broad.mit.edu	37	chr8	139833475	139833475	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtagtgtctgcaccagCgcacagtcaatgtgcaggga	14	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139833475	A	A	139833475	2	1	102	1	0	0	0	0	0	0	0	1	3713	755	27	3		3	COL22A1	8	139833475	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	227143	139833475	6530547	787	1e+05											
DENND3	22898	broad.mit.edu	37	chr8	142176321	142176321	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctaagtccaaggagacCgaccgttgagaaaagagcct	11	10	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142176321	T	T	142176321	3	4	102	1	0	0	0	0	1	0	0	0	4472	652	23	4	1388	4	DENND3	8	142176321	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2342846	142176321	4187701	788	100001											
BAI1	575	broad.mit.edu	37	chr8	143599407	143599407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacgctgggggtgtgacccGgggctgcgggctctcgggtc	19	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143599407	T	T	143599407	1	4	102	0	1	0	0	0	0	0	0	0	1303	1131	39	1		1	BAI1	8	143599407	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1423086	143599407	2764615	789	100002											
TOP1MT	116447	broad.mit.edu	37	chr8	144397842	144397842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaccctgtggggctggacCctacgggttgggacagggcc	17	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144397842	A	A	144397842	1	1	102	0	1	0	0	0	0	0	0	0	16488	638	22	2		2	TOP1MT	8	144397842	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	798435	144397842	1966180	790	100003											
ZC3H3	23144	broad.mit.edu	37	chr8	144590139	144590139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagggtcagagaggccacCcacagtgccagctctgccca	13	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144590139	A	A	144590139	1	1	102	0	1	0	0	0	0	0	0	0	17695	638	22	2		2	ZC3H3	8	144590139	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	192297	144590139	1773883	791	100004											
PLEC	5339	broad.mit.edu	37	chr8	144997654	144997654	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgctccgcctgtgcccgcCgcgccgcctcttgctcggcc	11	22	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144997654	T	T	144997654	3	4	102	1	0	0	0	0	1	0	0	0	12147	652	23	4	7208	4	PLEC	8	144997654	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	407515	144997654	1366368	792	100005											
OPLAH	26873	broad.mit.edu	37	chr8	145113227	145113227	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacgccgccggccgggccCgagagcacagcactggagcc	14	18	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145113227	G	G	145113227	2	3	102	1	0	0	0	0	0	0	0	1	10970	639	23	4		4	OPLAH	8	145113227	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	115573	145113227	1250795	793	100006											
ADCK5	203054	broad.mit.edu	37	chr8	145617134	145617134	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccactgcaatgcctctcctcTccccagatagcagaaaagct	6	16	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145617134	A	A	145617134	1	1	102	0	1	0	0	0	0	0	0	0	291	1566	54	5		5	ADCK5	8	145617134	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	503907	145617134	746888	794	100007											
DMRT3	58524	broad.mit.edu	37	chr9	977258	977258	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacgagagcttggagagccTcatccccgactcgctgcgcg	12	15	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	977258	G	G	977258	3	3	102	1	0	0	0	0	1	0	0	0	4627	1551	54	5	259	5	DMRT3	9	977258	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08		977258	140236173	795	100008											
SMARCA2	6595	broad.mit.edu	37	chr9	2054677	2054677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagatttaagaaccaaagCaaccgtggaactaaaagcac	7	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2054677	T	T	2054677	3	4	102	1	0	0	0	0	1	0	0	0	14883	710	25	4	1145	4	SMARCA2	9	2054677	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1077419	2054677	139158754	796	100009											
TTC39B	158219	broad.mit.edu	37	chr9	15186852	15186852	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaagcacatgccaccaggCccagctaattttttgtattt	6	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15186852	A	A	15186852	1	1	102	0	1	0	0	0	0	0	0	0	16834	754	26	3		3	TTC39B	9	15186852	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	13132175	15186852	126026579	797	100010											
SH3GL2	6456	broad.mit.edu	37	chr9	17789527	17789527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaattgctgagtcaagcatGttcaatctcttggagatgga	11	6	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17789527	T	T	17789527	3	4	102	1	0	0	0	0	1	0	0	0	14364	1377	48	3	625	3	SH3GL2	9	17789527	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2602675	17789527	123423904	798	100011											
TEK	7010	broad.mit.edu	37	chr9	27197664	27197664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgccatgcagacttagctAacatcactgcaggactattg	8	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27197664	G	G	27197664	1	3	102	0	1	0	0	0	0	0	0	0	15873	377	13	5		5	TEK	9	27197664	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	9408137	27197664	114015767	799	100012											
TAF1L	138474	broad.mit.edu	37	chr9	32634278	32634278	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatatcctccccatcccagaTgatagaatcctcccaatgca	5	15	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32634278	C	C	32634278	3	2	102	1	0	0	0	0	1	0	0	0	15642	1464	51	5	4184	5	TAF1L	9	32634278	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	5436614	32634278	108579153	800	100013											
SMU1	55234	broad.mit.edu	37	chr9	33071822	33071822	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgttttaacatgatcatGggatcagtctgtctcaaaag	9	6	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33071822	A	A	33071822	2	1	102	1	0	0	0	0	0	0	0	1	14931	1335	47	4		4	SMU1	9	33071822	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	437544	33071822	108141609	801	100014											
UNC13B	10497	broad.mit.edu	37	chr9	35403093	35403093	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttttgggtatagggtggtGacctcctcacccctcaggtt	12	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35403093	T	T	35403093	1	4	102	0	1	0	0	0	0	0	0	0	17111	1305	45	3		3	UNC13B	9	35403093	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2331271	35403093	105810338	802	100015											
NPR2	4882	broad.mit.edu	37	chr9	35792526	35792526	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacctgagctatgcctggGcctggccacgggtgggaccc	14	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35792526	A	A	35792526	3	1	102	1	0	0	0	0	1	0	0	0	10690	1203	42	4	123	4	NPR2	9	35792526	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	389433	35792526	105420905	803	100016											
FAM75A6	389730	broad.mit.edu	37	chr9	43627176	43627176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagcaggagataggactGggaaagaagactgaagatgg	16	3	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43627176	T	T	43627176	3	4	102	1	0	0	0	0	1	0	0	0	5674	1348	47	2	2524	2	FAM75A6	9	43627176	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	7834650	43627176	97586255	804	100017											
FAM75A6	389730	broad.mit.edu	37	chr9	43632958	43632958	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaggtggagggcaagcCagacaatgggggtgggtatg	22	4	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43632958	G	G	43632958	1	3	102	0	1	0	0	0	0	0	0	0	5674	609	21	4		4	FAM75A6	9	43632958	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	5782	43632958	97580473	805	100018											
RORB	6096	broad.mit.edu	37	chr9	77282816	77282816	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgttctgatatctccAggtagggcagtctcagttct	10	10	5	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77282816	G	G	77282816	2	3	102	1	0	0	0	0	0	0	0	1	13640	202	7	5		5	RORB	9	77282816	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	33649858	77282816	63930615	806	100019											
TRPM6	140803	broad.mit.edu	37	chr9	77397489	77397489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaactgcacagaataccaTaaattcaaacatttttaaga	3	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77397489	A	A	77397489	1	1	102	0	1	0	0	0	0	0	0	0	16715	1421	49	5		5	TRPM6	9	77397489	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	114673	77397489	63815942	807	100020											
C9orf41	138199	broad.mit.edu	37	chr9	77599774	77599774	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgatatcaacacttctgtTgaggtgctttgggagttaaa	10	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77599774	A	A	77599774	1	1	102	0	1	0	0	0	0	0	0	0	2508	1827	63	5		5	C9orf41	9	77599774	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	202285	77599774	63613657	808	100021											
FLJ46321	389763	broad.mit.edu	37	chr9	84609573	84609573	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagttataagagctgccttTactgggactactgaagctca	10	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84609573	A	A	84609573	3	1	102	1	0	0	0	0	1	0	0	0	5990	1751	61	5	4202	5	FLJ46321	9	84609573	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	7009799	84609573	56603858	809	100022											
IARS	3376	broad.mit.edu	37	chr9	94985116	94985116	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtccatgcagaaacagctCtcaacatttcatagaggtga	8	10	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94985116	G	G	94985116	1	3	102	0	1	0	0	0	0	0	0	0	7543	928	32	4		4	IARS	9	94985116	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	10375543	94985116	46228315	810	100023											
ECM2	1842	broad.mit.edu	37	chr9	95263280	95263280	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcagcaaggacttgggtaGataggacgggacgtgataga	17	5	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95263280	T	T	95263280	3	4	102	1	0	0	0	0	1	0	0	0	4938	933	33	3	447	3	ECM2	9	95263280	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	278164	95263280	45950151	811	100024											
WNK2	65268	broad.mit.edu	37	chr9	96025823	96025823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggttgtcctttggtgccAttaatgttcttgggttttgc	12	7	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96025823	G	G	96025823	1	3	102	0	1	0	0	0	0	0	0	0	17505	232	8	5		5	WNK2	9	96025823	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	762543	96025823	45187608	812	100025											
KIAA1529	57653	broad.mit.edu	37	chr9	100082584	100082584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagtggcgccgccatcatGgggaggagggatgggggtgt	21	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100082584	T	T	100082584	1	4	102	0	1	0	0	0	0	0	0	0	8310	1363	47	2		2	KIAA1529	9	100082584	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4056761	100082584	41130847	813	100026											
COL15A1	1306	broad.mit.edu	37	chr9	101788185	101788185	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtcactgatgttccccaGggccctgagggacagcctgg	13	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101788185	A	A	101788185	5	1	102	1	0	0	0	0	0	0	1	0	3704	1014	35	4	2042	4	COL15A1	9	101788185	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	1705601	101788185	39425246	814	100027											
SMC2	10592	broad.mit.edu	37	chr9	106901507	106901507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatggtgtttctacagtaGccagatttactcaatgtcaa	9	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106901507	T	T	106901507	3	4	102	1	0	0	0	0	1	0	0	0	14897	971	34	3	3599	3	SMC2	9	106901507	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	5113322	106901507	34311924	815	100028											
OR13F1	138805	broad.mit.edu	37	chr9	107267268	107267269	+	Missense_Mutation	DNP	CA	TG	TG													taaagccttttcaacgtgcaCagcccacctgatggtggtag							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	107267269	TG	TG	107267268	3	4	102	1	0	0	0	0	1	0	0	0	11035	478	17	4	727	4	OR13F1	9	107267268	Missense_Mutation	DNP	CA	TCGA-38-4631-01A-01D-1753-08	365761	107267268	33946163	816	100029											
OR13C8	138802	broad.mit.edu	37	chr9	107331656	107331656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgtaatctttccttcctcGacgtttgctacacaagttcc	5	13	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107331656	T	T	107331656	3	4	102	1	0	0	0	0	1	0	0	0	11032	1058	37	3	210	3	OR13C8	9	107331656	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	64388	107331656	33881775	817	100030											
OR13C8	138802	broad.mit.edu	37	chr9	107331807	107331807	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcttaggcacgatggcacTggaccgctatgtggccatct	12	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107331807	A	A	107331807	3	1	102	1	0	0	0	0	1	0	0	0	11032	1580	55	5	361	5	OR13C8	9	107331807	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	151	107331807	33881624	818	100031											
PTPN3	5774	broad.mit.edu	37	chr9	112184955	112184956	+	Intron	DNP	TC	AT	AT													tttttaaaagagataaagtgTctactgttgggtagtacaaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	112184956	AT	AT	112184955	1	1	102	0	1	0	0	0	0	0	0	0	12897	1682	58	5		5	PTPN3	9	112184955	Intron	DNP	TC	TCGA-38-4631-01A-01D-1753-08	4853148	112184955	29028476	819	100032											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112542647	112542647	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctggagcggatccccagCcgtccctgggcgttctcccg	12	19	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112542647	T	T	112542647	1	4	102	0	1	0	0	0	0	0	0	0	11504	754	26	4		4	PALM2-AKAP2	9	112542647	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	357692	112542647	28670784	820	100033											
RGS3	5998	broad.mit.edu	37	chr9	116259626	116259626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtactacctcctaggggaGcacctgggccggaccaagca	13	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116259626	T	T	116259626	3	4	102	1	0	0	0	0	1	0	0	0	13415	962	34	3	900	3	RGS3	9	116259626	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3716979	116259626	24953805	821	100034											
RGS3	5998	broad.mit.edu	37	chr9	116279846	116279846	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatctctgtaatcctgcccGgaccctcctgctgtcagagg	10	14	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116279846	A	A	116279846	3	1	102	1	0	0	0	0	1	0	0	0	13415	1116	39	4	1903	4	RGS3	9	116279846	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	20220	116279846	24933585	822	100035											
ASTN2	23245	broad.mit.edu	37	chr9	119488128	119488128	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtgagctctgagccatAgagggcctctgcgatgtagt	15	9	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119488128	G	G	119488128	3	3	102	1	0	0	0	0	1	0	0	0	1069	420	15	5	1555	5	ASTN2	9	119488128	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3208282	119488128	21725303	823	100036											
ASTN2	23245	broad.mit.edu	37	chr9	119625959	119625959	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtcacgaactggcccgaagGaagacagcaggtcattgatg	13	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119625959	C	C	119625959	3	2	102	1	0	0	0	0	1	0	0	0	1069	1174	41	4	2360	4	ASTN2	9	119625959	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	137831	119625959	21587472	824	100037											
TRAF1	7185	broad.mit.edu	37	chr9	123686073	123686073	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgatcctcgccattcctGgggaaacatggacaaagcct	9	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123686073	A	A	123686073	1	1	102	0	1	0	0	0	0	0	0	0	16561	1363	47	4		4	TRAF1	9	123686073	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4060114	123686073	17527358	825	100038											
MORN5	254956	broad.mit.edu	37	chr9	124936922	124936922	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggtaggtttcttccgaCactgcagcacgttttctctt	9	12	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124936922	G	G	124936922	1	3	102	0	1	0	0	0	0	0	0	0	9805	493	17	4		4	MORN5	9	124936922	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1250849	124936922	16276509	826	100039											
OR1Q1	158131	broad.mit.edu	37	chr9	125377093	125377093	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacccagaagagcaaatccCactcttccttgttttctcac	4	16	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125377093	T	T	125377093	3	4	102	1	0	0	0	0	1	0	0	0	11065	594	21	4	79	4	OR1Q1	9	125377093	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	440171	125377093	15836338	827	100040											
RC3H2	54542	broad.mit.edu	37	chr9	125617997	125617997	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctccaacccctgcaacccCagcaaaatcataccattaac	2	18	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125617997	T	T	125617997	1	4	102	0	1	0	0	0	0	0	0	0	13275	609	21	4		4	RC3H2	9	125617997	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	240904	125617997	15595434	828	100041											
DENND1A	57706	broad.mit.edu	37	chr9	126202795	126202795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagaaggatagtcagcgGttggcactggggttctggca	18	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126202795	T	T	126202795	1	4	102	0	1	0	0	0	0	0	0	0	4466	1276	44	3		3	DENND1A	9	126202795	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	584798	126202795	15010636	829	100042											
FPGS	2356	broad.mit.edu	37	chr9	130569352	130569352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggcgcctctaccaccggCtggaggagaccaaggtgccg	14	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130569352	A	A	130569352	3	1	102	1	0	0	0	0	1	0	0	0	6096	796	28	3	505	3	FPGS	9	130569352	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4366557	130569352	10644079	830	100043											
NAIF1	203245	broad.mit.edu	37	chr9	130825873	130825873	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgtgccctccatggccTgggcctggcgctcctgggca	14	16	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130825873	A	A	130825873	3	1	102	1	0	0	0	0	1	0	0	0	10240	1580	55	5	169	5	NAIF1	9	130825873	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	256521	130825873	10387558	831	100044											
WDR34	89891	broad.mit.edu	37	chr9	131398630	131398630	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggggacctccaccacggcCgacggctgctggggacgcag	16	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131398630	T	T	131398630	2	4	102	1	0	0	0	0	0	0	0	1	17415	639	23	4		4	WDR34	9	131398630	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	572757	131398630	9814801	832	100045											
TSC1	7248	broad.mit.edu	37	chr9	135797337	135797337	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacactggcatggagatggaCgagatagacttccgccacgt	12	11	0	3	rs118203395		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135797337	G	G	135797337	3	3	102	1	0	0	0	0	1	0	0	0	16730	536	19	4	3030	4	TSC1	9	135797337	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4398707	135797337	5416094	833	100046											
GFI1B	8328	broad.mit.edu	37	chr9	135864468	135864468	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctccacccctcacggGctcgaagtgcatgtgcgacg	11	15	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135864468	T	T	135864468	2	4	102	1	0	0	0	0	0	0	0	1	6404	1190	42	3		3	GFI1B	9	135864468	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	67131	135864468	5348963	834	100047											
ABO	28	broad.mit.edu	37	chr9	136131636	136131636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccggtccccagcgtcacgCggggcaccgcggccggctgg	17	17	1	0	rs8176738		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136131636	T	T	136131636	3	4	102	1	0	0	0	0	1	0	0	0	97	768	27	4	586	4	ABO	9	136131636	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	267168	136131636	5081795	835	100048											
DBH	1621	broad.mit.edu	37	chr9	136509332	136509333	+	Intron	DNP	CC	AT	AT													cgtctgtctgacaccttgccCcacacaggcattttactacc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	136509333	AT	AT	136509332	1	1	102	0	1	0	0	0	0	0	0	0	4283	638	22	2		2	DBH	9	136509332	Intron	DNP	CC	TCGA-38-4631-01A-01D-1753-08	377696	136509332	4704099	836	100049											
RXRA	6256	broad.mit.edu	37	chr9	137293753	137293754	+	Intron	INS	-	A	A													tgcggggctggggcaaggggINSagggggtggggcctggggtg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137293754	A	A	137293753	6	5	102	0	1	1	1	0	0	0	0	0	13874	1189	41	0		0	RXRA	9	137293753	Intron	INS	-	TCGA-38-4631-01A-01D-1753-08	784421	137293753	3919678	837	100050											
COL5A1	1289	broad.mit.edu	37	chr9	137677868	137677868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagtcccagggttaccaGggtatccaggaagacaagga	14	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137677868	T	T	137677868	3	4	102	1	0	0	0	0	1	0	0	0	3728	1000	35	2	2742	2	COL5A1	9	137677868	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	384115	137677868	3535563	838	100051											
COL5A1	1289	broad.mit.edu	37	chr9	137694688	137694688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagattctcactcccttGcaagtcactcgaaacgtctg	8	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137694688	T	T	137694688	1	4	102	0	1	0	0	0	0	0	0	0	3728	1334	46	3		3	COL5A1	9	137694688	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	16820	137694688	3518743	839	100052											
SLC34A3	142680	broad.mit.edu	37	chr9	140126579	140126579	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacacagacccctggaccctCcctcagctgaaggacacaag	9	16	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140126579	A	A	140126579	2	1	102	1	0	0	0	0	0	0	0	1	14683	842	30	3		3	SLC34A3	9	140126579	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	2431891	140126579	1086852	840	100053											
ZMYND19	116225	broad.mit.edu	37	chr9	140482052	140482052	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggacacaaaaataactgcgaGattcagggaaggcaaggcag	13	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140482052	T	T	140482052	1	4	102	0	1	0	0	0	0	0	0	0	17836	957	33	3		3	ZMYND19	9	140482052	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	355473	140482052	731379	841	100054											
CACNA1B	774	broad.mit.edu	37	chr9	140941274	140941274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccagagccctttctgcGggacgggctgagcctgccct	13	16	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140941274	T	T	140941274	1	4	102	0	1	0	0	0	0	0	0	0	2565	1131	39	1		1	CACNA1B	9	140941274	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	459222	140941274	272157	842	100055											
DIP2C	22982	broad.mit.edu	37	chr10	394829	394829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgagcttctcacagcCtccgtcatcctggcgggttt	11	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	394829	A	A	394829	1	1	102	0	1	0	0	0	0	0	0	0	4569	696	24	2		2	DIP2C	10	394829	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08		394829	135139918	843	100056											
DIP2C	22982	broad.mit.edu	37	chr10	402355	402355	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtagccagggaaggccagctCcgcgcctcacccgacagttg	13	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	402355	A	A	402355	1	1	102	0	1	0	0	0	0	0	0	0	4569	870	30	3		3	DIP2C	10	402355	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	7526	402355	135132392	844	100057											
GTPBP4	23560	broad.mit.edu	37	chr10	1060341	1060341	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtggtggctcatgcctgtAatcccagcactttgggaggc	14	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1060341	T	T	1060341	1	4	102	0	1	0	0	0	0	0	0	0	6947	377	13	5		5	GTPBP4	10	1060341	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	657986	1060341	134474406	845	100058											
KLF6	1316	broad.mit.edu	37	chr10	3821740	3821740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgctccctcagaggtgCctcttcatgtgcagggccag	11	14	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3821740	A	A	3821740	3	1	102	1	0	0	0	0	1	0	0	0	8421	738	26	3	12	3	KLF6	10	3821740	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2761399	3821740	131713007	846	100059											
AKR1C4	1109	broad.mit.edu	37	chr10	5246488	5246488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagatcaacttctcttctGttctcagcatgaccatcctt	6	12	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5246488	T	T	5246488	1	4	102	0	1	0	0	0	0	0	0	0	472	1392	48	3		3	AKR1C4	10	5246488	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1424748	5246488	130288259	847	100060											
CELF2	10659	broad.mit.edu	37	chr10	11299787	11299787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgttctctccatttggcCagatagaagaatgccggatc	10	9	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11299787	A	A	11299787	3	1	102	1	0	0	0	0	1	0	0	0	3246	595	21	2	565	2	CELF2	10	11299787	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	6053299	11299787	124234960	848	100061											
DHTKD1	55526	broad.mit.edu	37	chr10	12110964	12110964	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccgcctctgacgagtcccgGatttaccagggccggtggga	15	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12110964	T	T	12110964	1	4	102	0	1	0	0	0	0	0	0	0	4540	1189	41	3		3	DHTKD1	10	12110964	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	811177	12110964	123423783	849	100062											
DHTKD1	55526	broad.mit.edu	37	chr10	12131102	12131102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttggggcgcaccatcccCtccatgtgacaatgttgccc	9	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12131102	T	T	12131102	3	4	102	1	0	0	0	0	1	0	0	0	4540	681	24	4	853	4	DHTKD1	10	12131102	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	20138	12131102	123403645	850	100063											
FAM107B	83641	broad.mit.edu	37	chr10	14709584	14709584	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaggatgctccaagcacttCtgtcagcaacagcagcctgg	10	12	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14709584	A	A	14709584	1	1	102	0	1	0	0	0	0	0	0	0	5436	928	32	3		3	FAM107B	10	14709584	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2578482	14709584	120825163	851	100064											
CUBN	8029	broad.mit.edu	37	chr10	16957942	16957942	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctggagatgccactcaCagaataagttgtctctgtat	9	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16957942	A	A	16957942	3	1	102	1	0	0	0	0	1	0	0	0	4084	478	17	3	3871	3	CUBN	10	16957942	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2248358	16957942	118576805	852	100065											
CUBN	8029	broad.mit.edu	37	chr10	17152917	17152917	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattgaaccgaggcagcaCctggtggacaggcctggcag	15	11	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17152917	A	A	17152917	5	1	102	1	0	0	0	0	0	0	1	0	4084	521	18	3	10091	3	CUBN	10	17152917	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	194975	17152917	118381830	853	100066											
ST8SIA6	338596	broad.mit.edu	37	chr10	17363209	17363209	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttttgtcttgctttagactCttcgagcgtgtagtatactt	8	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17363209	A	A	17363209	4	1	102	1	0	0	0	0	0	1	0	0	15354	922	32	3	335	3	ST8SIA6	10	17363209	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	210292	17363209	118171538	854	100067											
ST8SIA6	338596	broad.mit.edu	37	chr10	17365138	17365138	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttactaacatctcctgtGgttgggggtaggttacacct	10	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17365138	T	T	17365138	2	4	102	1	0	0	0	0	0	0	0	1	15354	1335	47	2		2	ST8SIA6	10	17365138	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1929	17365138	118169609	855	100068											
SLC39A12	221074	broad.mit.edu	37	chr10	18242435	18242435	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaactgggtgcccacggaGgagaaacggaatgcaaggag	16	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18242435	A	A	18242435	3	1	102	1	0	0	0	0	1	0	0	0	14729	1000	35	4	232	4	SLC39A12	10	18242435	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	877297	18242435	117292312	856	100069											
SLC39A12	221074	broad.mit.edu	37	chr10	18280107	18280107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttacataagcaggaagccCcagaatttgggcatttccat	9	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18280107	A	A	18280107	3	1	102	1	0	0	0	0	1	0	0	0	14729	623	22	2	1323	2	SLC39A12	10	18280107	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	37672	18280107	117254640	857	100070											
GPR158	57512	broad.mit.edu	37	chr10	25886831	25886831	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccatcatgagacgcattaCggagatcccagagacagtca	9	11	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25886831	A	A	25886831	3	1	102	1	0	0	0	0	1	0	0	0	6728	536	19	3	2318	3	GPR158	10	25886831	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	7606724	25886831	109647916	858	100071											
YME1L1	10730	broad.mit.edu	37	chr10	27437936	27437936	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgttttttggtgtatggaAggcattgatgagatgactca	13	3	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27437936	T	T	27437936	3	4	102	1	0	0	0	0	1	0	0	0	17614	72	3	5	2330	5	YME1L1	10	27437936	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1551105	27437936	108096811	859	100072											
ARMC4	55130	broad.mit.edu	37	chr10	28229771	28229771	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccaatgttcatggaaatcTtaaaaagaacatttaaggca	6	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28229771	A	A	28229771	1	1	102	0	1	0	0	0	0	0	0	0	957	1624	56	5		5	ARMC4	10	28229771	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	791835	28229771	107304976	860	100073											
MTPAP	55149	broad.mit.edu	37	chr10	30655387	30655387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagagagtgagaaggcaCggaggttgccaggtcatccc	16	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30655387	A	A	30655387	1	1	102	0	1	0	0	0	0	0	0	0	10050	551	19	3		3	MTPAP	10	30655387	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2425616	30655387	104879360	861	100074											
ZNF438	220929	broad.mit.edu	37	chr10	31138374	31138374	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacagtcggccttaggtccTggtaaagaaaaacctgcaat	9	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31138374	A	A	31138374	2	1	102	1	0	0	0	0	0	0	0	1	18037	1567	55	5		5	ZNF438	10	31138374	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	482987	31138374	104396373	862	100075											
ZNF33A	7581	broad.mit.edu	37	chr10	38344464	38344464	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagaaaccttttgaatGtcttgagtgtgggaaatcct	12	5	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38344464	A	A	38344464	3	1	102	1	0	0	0	0	1	0	0	0	17980	1377	48	4	1426	4	ZNF33A	10	38344464	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	7206090	38344464	97190283	863	100076											
FXYD4	53828	broad.mit.edu	37	chr10	43871404	43871404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcactcctggggccgggCagcaagagtctgggatatag	15	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43871404	A	A	43871404	1	1	102	0	1	0	0	0	0	0	0	0	6180	725	25	3		3	FXYD4	10	43871404	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	5526940	43871404	91663343	864	100077											
TMEM72	643236	broad.mit.edu	37	chr10	45430010	45430010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaatggccacacagcgcCgggttgcaggagctctgctg	15	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45430010	A	A	45430010	1	1	102	0	1	0	0	0	0	0	0	0	16324	667	23	1		1	TMEM72	10	45430010	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1558606	45430010	90104737	865	100078											
RBP3	5949	broad.mit.edu	37	chr10	48387881	48387881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcagggatatgggctgcCttcaggtgtgggtctccgga	15	9	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48387881	A	A	48387881	3	1	102	1	0	0	0	0	1	0	0	0	13265	680	24	2	762	2	RBP3	10	48387881	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2957871	48387881	87146866	866	100079											
FRMPD2	143162	broad.mit.edu	37	chr10	49448328	49448328	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatcacaatgtggatgtgTagcccatacagggcaggaaa	12	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49448328	C	C	49448328	1	2	102	0	1	0	0	0	0	0	0	0	6118	1653	57	5		5	FRMPD2	10	49448328	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	1060447	49448328	86086419	867	100080											
A1CF	29974	broad.mit.edu	37	chr10	52603576	52603576	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taacaggacaagagctaggtCaaggcagtgattataaagag	12	5	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52603576	A	A	52603576	1	1	102	0	1	0	0	0	0	0	0	0	2	841	29	3		3	A1CF	10	52603576	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3155248	52603576	82931171	868	100081											
PCDH15	65217	broad.mit.edu	37	chr10	55570366	55570366	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accaaccacctcaccatattCctcctgtccagctggtggta	6	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55570366	A	A	55570366	4	1	102	1	0	0	0	0	0	1	0	0	11605	864	30	3	1467	3	PCDH15	10	55570366	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2966790	55570366	79964381	869	100082											
PCDH15	65217	broad.mit.edu	37	chr10	55973880	55973880	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatctgctttttctatttcCcttcatcagctgaggaacaa	6	10	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55973880	T	T	55973880	1	4	102	0	1	0	0	0	0	0	0	0	11605	638	22	4		4	PCDH15	10	55973880	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	403514	55973880	79560867	870	100083											
PCDH15	65217	broad.mit.edu	37	chr10	56138550	56138550	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaatcactaacatctctatCcagaactcttccggtgctgt	5	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56138550	G	G	56138550	3	3	102	1	0	0	0	0	1	0	0	0	11605	855	30	4	7321	4	PCDH15	10	56138550	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	164670	56138550	79396197	871	100084											
ANK3	288	broad.mit.edu	37	chr10	62444367	62444367	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactgtgctggaaagacaacTgtcttatacaggctgcagtt	11	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62444367	A	A	62444367	1	1	102	0	1	0	0	0	0	0	0	0	622	1595	55	5		5	ANK3	10	62444367	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	6305817	62444367	73090380	872	100085											
TMEM26	219623	broad.mit.edu	37	chr10	63190892	63190893	+	Intron	DNP	GG	TT	TT													tcttcaggaaagaattagctGggaagcatgtatagcaggta							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	63190893	TT	TT	63190892	1	4	102	0	1	0	0	0	0	0	0	0	16274	1363	47	2		2	TMEM26	10	63190892	Intron	DNP	GG	TCGA-38-4631-01A-01D-1753-08	746525	63190892	72343855	873	100086											
C10orf107	219621	broad.mit.edu	37	chr10	63519962	63519962	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatttctttttgtctttccAttcaccctacctcatcatta	1	12	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63519962	G	G	63519962	1	3	102	0	1	0	0	0	0	0	0	0	1592	232	8	5		5	C10orf107	10	63519962	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	329070	63519962	72014785	874	100087											
JMJD1C	221037	broad.mit.edu	37	chr10	64982042	64982042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagagctgtcgagattgGtgttaaaaagtttatgatta	13	2	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64982042	T	T	64982042	1	4	102	0	1	0	0	0	0	0	0	0	8020	1276	44	3		3	JMJD1C	10	64982042	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1462080	64982042	70552705	875	100088											
RUFY2	55680	broad.mit.edu	37	chr10	70154087	70154087	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctagtcactttcacttacttGtgagtctaaatcctctccct	4	13	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70154087	C	C	70154087	3	2	102	1	0	0	0	0	1	0	0	0	13850	1386	48	4	1469	4	RUFY2	10	70154087	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	5172045	70154087	65380660	876	100089											
TET1	80312	broad.mit.edu	37	chr10	70332883	70332883	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacccccaaagttacctctcAaggaaaccccagcattcagt	5	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70332883	G	G	70332883	3	3	102	1	0	0	0	0	1	0	0	0	15891	130	5	5	790	5	TET1	10	70332883	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	178796	70332883	65201864	877	100090											
HKDC1	80201	broad.mit.edu	37	chr10	71010259	71010259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcatcgatgtccgcctgGtgtgaatgccgctctctctc	10	15	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71010259	T	T	71010259	1	4	102	0	1	0	0	0	0	0	0	0	7260	1276	44	3		3	HKDC1	10	71010259	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	677376	71010259	64524488	878	100091											
CDH23	64072	broad.mit.edu	37	chr10	73406454	73406454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagagggattttgtccaaGggacctcagcaatcagggaa	12	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73406454	T	T	73406454	1	4	102	0	1	0	0	0	0	0	0	0	3138	1000	35	2		2	CDH23	10	73406454	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2396195	73406454	62128293	879	100092											
CDH23	64072	broad.mit.edu	37	chr10	73468918	73468918	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttgtgagaaccgtggtggGcctggaccgggagaccacag	17	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73468918	A	A	73468918	3	1	102	1	0	0	0	0	1	0	0	0	3138	1203	42	4	3579	4	CDH23	10	73468918	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	62464	73468918	62065829	880	100093											
CCDC109A	90550	broad.mit.edu	37	chr10	74628615	74628615	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagagcagctggctcccctGgaaaaggtaaaacttccaat	9	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74628615	C	C	74628615	2	2	102	1	0	0	0	0	0	0	0	1	2770	1335	47	4		4	CCDC109A	10	74628615	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1159697	74628615	60906132	881	100094											
KCNMA1	3778	broad.mit.edu	37	chr10	78649087	78649087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtgttggatttaatatGggcagagtaatttgcatgtt	11	4	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78649087	T	T	78649087	1	4	102	0	1	0	0	0	0	0	0	0	8143	1363	47	2		2	KCNMA1	10	78649087	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4020472	78649087	56885660	882	100095											
DLG5	9231	broad.mit.edu	37	chr10	79603414	79603414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctccaacttgtccatggcCgtgtcatacagtttgttgag	9	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79603414	A	A	79603414	2	1	102	1	0	0	0	0	0	0	0	1	4598	639	23	1		1	DLG5	10	79603414	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	954327	79603414	55931333	883	100096											
MAT1A	4143	broad.mit.edu	37	chr10	82043599	82043599	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatcgggctgaaaggcacGggtttgactcagcactgggg	15	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82043599	A	A	82043599	1	1	102	0	1	0	0	0	0	0	0	0	9421	1131	39	4		4	MAT1A	10	82043599	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2440185	82043599	53491148	884	100097											
CDHR1	92211	broad.mit.edu	37	chr10	85957635	85957635	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctggcagcctgcagtattTgggcctgagaagggtgaggc	16	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85957635	A	A	85957635	1	1	102	0	1	0	0	0	0	0	0	0	3148	1827	63	5		5	CDHR1	10	85957635	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3914036	85957635	49577112	885	100098											
CDHR1	92211	broad.mit.edu	37	chr10	85971992	85971992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccctgggctagcctggaCgctgaggccactgccaggta	14	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85971992	A	A	85971992	3	1	102	1	0	0	0	0	1	0	0	0	3148	535	19	3	1669	3	CDHR1	10	85971992	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	14357	85971992	49562755	886	100099											
LRIT2	340745	broad.mit.edu	37	chr10	85982287	85982287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggtgcatgtagggcctGggcaggctggacatggagag	18	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85982287	T	T	85982287	3	4	102	1	0	0	0	0	1	0	0	0	9035	1357	47	2	614	2	LRIT2	10	85982287	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	10295	85982287	49552460	887	100100											
GRID1	2894	broad.mit.edu	37	chr10	87379584	87379584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacccttgaccactagaGtcctgaggcagcggtagtta	10	12	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87379584	T	T	87379584	1	4	102	0	1	0	0	0	0	0	0	0	6837	1044	36	3		3	GRID1	10	87379584	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1397297	87379584	48155163	888	100101											
GRID1	2894	broad.mit.edu	37	chr10	87966366	87966366	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatgcacagccagtggacGtgaccaaggccaaaatcccc	10	14	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87966366	C	C	87966366	3	2	102	1	0	0	0	0	1	0	0	0	6837	1145	40	4	2810	4	GRID1	10	87966366	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	586782	87966366	47568381	889	100102											
LIPK	643414	broad.mit.edu	37	chr10	90497489	90497489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctattccgtcgtatttgcaGcaacttcctatttactctga	6	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90497489	T	T	90497489	3	4	102	1	0	0	0	0	1	0	0	0	8900	971	34	3	789	3	LIPK	10	90497489	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2531123	90497489	45037258	890	100103											
CYP26A1	1592	broad.mit.edu	37	chr10	94835797	94835797	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacttccgaataagtcagTgtgctgccttcatggagtat	9	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94835797	A	A	94835797	1	1	102	0	1	0	0	0	0	0	0	0	4188	1711	59	5		5	CYP26A1	10	94835797	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	4338308	94835797	40698950	891	100104											
HPSE2	60495	broad.mit.edu	37	chr10	100503533	100503533	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggccaaacatcacaaacgTtttctgggccagggtactag	11	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100503533	G	G	100503533	1	3	102	0	1	0	0	0	0	0	0	0	7412	1740	60	5		5	HPSE2	10	100503533	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	5667736	100503533	35031214	892	100105											
CNNM1	26507	broad.mit.edu	37	chr10	101122153	101122153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttgtgctgcttctacaGgtgagtaggaaagtcaggga	13	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101122153	T	T	101122153	3	4	102	1	0	0	0	0	1	0	0	0	3644	1014	35	2	2042	2	CNNM1	10	101122153	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	618620	101122153	34412594	893	100106											
SEC31B	25956	broad.mit.edu	37	chr10	102283707	102283707	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctacagaaaaaaacacaggtCagcaagaacatacattcagt	6	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102283707	A	A	102283707	1	1	102	0	1	0	0	0	0	0	0	0	14112	841	29	3		3	SEC31B	10	102283707	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1161554	102283707	33251040	894	100107											
PDZD7	79955	broad.mit.edu	37	chr10	102783789	102783789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggactcttctccaccCggactgaatggatgatgtca	10	12	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102783789	A	A	102783789	3	1	102	1	0	0	0	0	1	0	0	0	11798	652	23	1	1322	1	PDZD7	10	102783789	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	500082	102783789	32750958	895	100108											
MGEA5	10724	broad.mit.edu	37	chr10	103572716	103572716	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtcataaaattcttgTacaactacatttaaaatata	2	5	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103572716	C	C	103572716	1	2	102	0	1	0	0	0	0	0	0	0	9648	1653	57	5		5	MGEA5	10	103572716	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	788927	103572716	31962031	896	100109											
NT5C2	22978	broad.mit.edu	37	chr10	104866274	104866274	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttgttaaggataaatctgGaatgtctaatttgaggggta	11	2	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104866274	A	A	104866274	1	1	102	0	1	0	0	0	0	0	0	0	10782	1189	41	4		4	NT5C2	10	104866274	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1293558	104866274	30668473	897	100110											
PDCD11	22984	broad.mit.edu	37	chr10	105197799	105197799	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctgtccactgcagacaaCgtattgactttgtcgctgcg	9	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105197799	T	T	105197799	2	4	102	1	0	0	0	0	0	0	0	1	11711	535	19	4		4	PDCD11	10	105197799	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	331525	105197799	30336948	898	100111											
SORCS3	22986	broad.mit.edu	37	chr10	106737195	106737195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccttctatatccagagcCtgctctttcatcccaagcaa	4	15	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106737195	A	A	106737195	3	1	102	1	0	0	0	0	1	0	0	0	15046	680	24	2	912	2	SORCS3	10	106737195	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1539396	106737195	28797552	899	100112											
SORCS3	22986	broad.mit.edu	37	chr10	106907368	106907368	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttacaagccttccatcttCtttcaggacatgcacatcat	4	14	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106907368	A	A	106907368	1	1	102	0	1	0	0	0	0	0	0	0	15046	928	32	3		3	SORCS3	10	106907368	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	170173	106907368	28627379	900	100113											
SORCS1	114815	broad.mit.edu	37	chr10	108339057	108339057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcacatcactgtaacaCatgcttctgaacctgtcagg	7	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108339057	A	A	108339057	1	1	102	0	1	0	0	0	0	0	0	0	15044	493	17	3		3	SORCS1	10	108339057	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1431689	108339057	27195690	901	100114											
HABP2	3026	broad.mit.edu	37	chr10	115345513	115345513	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggttggtgccaccctggtcCccacagtagtgactcttttc	11	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115345513	T	T	115345513	1	4	102	0	1	0	0	0	0	0	0	0	7004	638	22	4		4	HABP2	10	115345513	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	7006456	115345513	20189234	902	100115											
NRAP	4892	broad.mit.edu	37	chr10	115411743	115411743	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctccctgtggctctcctaAagctgcaccatcaggctaca	7	16	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115411743	G	G	115411743	1	3	102	0	1	0	0	0	0	0	0	0	10733	29	1	5		5	NRAP	10	115411743	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	66230	115411743	20123004	903	100116											
C10orf96	374355	broad.mit.edu	37	chr10	118116963	118116963	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagagtgaattgatacaaGaattatttactctccaaaga	6	5	1	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118116963	T	T	118116963	4	4	102	1	0	0	0	0	0	1	0	0	1638	943	33	3	538	3	C10orf96	10	118116963	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2705220	118116963	17417784	904	100117											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199464	118199464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattgacagggacctctgGgtttttcttcttatgttctt	8	7	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118199464	T	T	118199464	1	4	102	0	1	0	0	0	0	0	0	0	12247	1247	43	2		2	PNLIPRP3	10	118199464	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	82501	118199464	17335283	905	100118											
KCNK18	338567	broad.mit.edu	37	chr10	118957067	118957067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggaaagctcttccctgGcctctgcttcctctgctttc	8	16	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118957067	T	T	118957067	3	4	102	1	0	0	0	0	1	0	0	0	8135	1203	42	3	70	3	KCNK18	10	118957067	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	757603	118957067	16577680	906	100119											
PDZD8	118987	broad.mit.edu	37	chr10	119044326	119044326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctgcatcgtctatggcatCcacattttttgcttgctttt	7	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119044326	A	A	119044326	3	1	102	1	0	0	0	0	1	0	0	0	11799	855	30	3	1550	3	PDZD8	10	119044326	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	87259	119044326	16490421	907	100120											
EMX2	2018	broad.mit.edu	37	chr10	119305306	119305307	+	Missense_Mutation	DNP	CC	AA	AA													aggaagcagctggcacacagCctcagcctcacggaaactca							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	119305307	AA	AA	119305306	3	1	102	1	0	0	0	0	1	0	0	0	5150	738	26	3	576	3	EMX2	10	119305306	Missense_Mutation	DNP	CC	TCGA-38-4631-01A-01D-1753-08	260980	119305306	16229441	908	100121											
GRK5	2869	broad.mit.edu	37	chr10	121203194	121203194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcgggaggaggtggaccGccgggtcctggagacggagg	22	8	0	1	rs143962659	byFrequency	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121203194	T	T	121203194	3	4	102	1	0	0	0	0	1	0	0	0	6858	1087	38	3	1242	3	GRK5	10	121203194	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1897888	121203194	14331553	909	100122											
BAG3	9531	broad.mit.edu	37	chr10	121431949	121431950	+	Missense_Mutation	DNP	GA	AG	AG													tccttccaccaagcccagaaGacgcactacccagcgcagca							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	121431950	AG	AG	121431949	3	1	102	1	0	0	0	0	1	0	0	0	1293	933	33	4	700	4	BAG3	10	121431949	Missense_Mutation	DNP	GA	TCGA-38-4631-01A-01D-1753-08	228755	121431949	14102798	910	100123											
NSMCE4A	54780	broad.mit.edu	37	chr10	123718998	123718998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcagaactatgcaggggCaacaggcagagctttacctc	12	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123718998	A	A	123718998	1	1	102	0	1	0	0	0	0	0	0	0	10772	725	25	3		3	NSMCE4A	10	123718998	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2287049	123718998	11815749	911	100124											
DMBT1	1755	broad.mit.edu	37	chr10	124328259	124328259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcggctgtggctattcCatgtcagccctgggcggggc	15	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124328259	A	A	124328259	1	1	102	0	1	0	0	0	0	0	0	0	4617	609	21	2		2	DMBT1	10	124328259	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	609261	124328259	11206488	912	100125											
FAM24A	118670	broad.mit.edu	37	chr10	124672365	124672365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagccaggccaaagccacCaccatggagtcttgtccatc	8	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124672365	A	A	124672365	2	1	102	1	0	0	0	0	0	0	0	1	5595	581	21	2		2	FAM24A	10	124672365	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	344106	124672365	10862382	913	100126											
CPXM2	119587	broad.mit.edu	37	chr10	125558511	125558511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccatcagactgtagtgGtaggtttgagttgacagaga	13	6	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125558511	T	T	125558511	1	4	102	0	1	0	0	0	0	0	0	0	3870	1276	44	3		3	CPXM2	10	125558511	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	886146	125558511	9976236	914	100127											
DOCK1	1793	broad.mit.edu	37	chr10	128824628	128824628	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaaggtggccattcccAtcgaggacgttaaccgcagt	11	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128824628	T	T	128824628	3	4	102	1	0	0	0	0	1	0	0	0	4724	217	8	5	1563	5	DOCK1	10	128824628	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3266117	128824628	6710119	915	100128											
EBF3	253738	broad.mit.edu	37	chr10	131757179	131757179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcccgcgcccccgccgCccgccgcccgccgctcacct	11	26	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131757179	A	A	131757179	1	1	102	0	1	0	0	0	0	0	0	0	4922	754	26	3		3	EBF3	10	131757179	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2932551	131757179	3777568	916	100129											
PAOX	196743	broad.mit.edu	37	chr10	135204895	135204895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgctgtcgggatggaGggaggccgaccgcctcctca	16	13	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135204895	T	T	135204895	3	4	102	1	0	0	0	0	1	0	0	0	11517	1000	35	2	1498	2	PAOX	10	135204895	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3447716	135204895	329852	917	100130											
MUC2	4583	broad.mit.edu	37	chr11	1093769	1093769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaacccctcagacctctcGgtccacctcttcccctctca	3	22	5	1	rs41361144	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1093769	T	T	1093769	3	4	102	1	0	0	0	0	1	0	0	0	10069	1116	39	1	5698	1	MUC2	11	1093769	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08		1093769	133912747	918	100131											
MUC5B	727897	broad.mit.edu	37	chr11	1246915	1246915	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccctcttcccacagagacCcagggccctgtggagccgag	11	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1246915	T	T	1246915	2	4	102	1	0	0	0	0	0	0	0	1	10073	610	22	4		4	MUC5B	11	1246915	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	153146	1246915	133759601	919	100132											
TRPM5	29850	broad.mit.edu	37	chr11	2427906	2427906	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcacctgtgggcggttttcCgcagcacctccccctcgctg	11	18	0	0	rs148532424		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2427906	G	G	2427906	3	3	102	1	0	0	0	0	1	0	0	0	16714	652	23	4	277	4	TRPM5	11	2427906	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1180991	2427906	132578610	920	100133											
NUP98	4928	broad.mit.edu	37	chr11	3726349	3726349	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacttgctagagaagtccacTtgggttagaagaagaaaagt	11	5	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3726349	A	A	3726349	1	1	102	0	1	0	0	0	0	0	0	0	10868	1624	56	5		5	NUP98	11	3726349	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	1298443	3726349	131280167	921	100134											
HBB	3043	broad.mit.edu	37	chr11	5246896	5246896	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgataggcagcctgcactgGtggggtgaattctttgccaa	13	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5246896	T	T	5246896	3	4	102	1	0	0	0	0	1	0	0	0	7044	1261	44	3	71	3	HBB	11	5246896	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1520547	5246896	129759620	922	100135											
OR51Q1	390061	broad.mit.edu	37	chr11	5443936	5443936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttactcaagcgactgcCtttctgccactcccaccttc	4	17	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5443936	A	A	5443936	3	1	102	1	0	0	0	0	1	0	0	0	11198	681	24	2	508	2	OR51Q1	11	5443936	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	197040	5443936	129562580	923	100136											
HBG2	3048	broad.mit.edu	37	chr11	5593311	5593311	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatccatgagtgttcccaTtgctcaaaatggctccttcc	6	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5593311	C	C	5593311	1	2	102	0	1	0	0	0	0	0	0	0	7049	1508	52	5		5	HBG2	11	5593311	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	149375	5593311	129413205	924	100137											
OR56B1	387748	broad.mit.edu	37	chr11	5757967	5757967	+	Frame_Shift_Del	DEL	T	-	-													catgtatattttccttggcaTcctctgtatggtagacatgg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5757967	-	-	5757967	7	5	102	1	0	1	0	1	0	0	0	0	11231	1435	50	0	223	0	OR56B1	11	5757967	Frame_Shift_Del	DEL	T	TCGA-38-4631-01A-01D-1753-08	164656	5757967	129248549	925	100138											
OR52E8	390079	broad.mit.edu	37	chr11	5878090	5878090	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaccacatacaggttggcTaatataatatgtatatactg	6	7	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5878090	A	A	5878090	3	1	102	1	0	0	0	0	1	0	0	0	11212	1519	53	5	112	5	OR52E8	11	5878090	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	120123	5878090	129128426	926	100139											
OR56A3	390083	broad.mit.edu	37	chr11	5968608	5968608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaatgacaccctctccaCtgaagcttcagacttcctct	5	16	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5968608	A	A	5968608	3	1	102	1	0	0	0	0	1	0	0	0	11228	565	20	3	34	3	OR56A3	11	5968608	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	90518	5968608	129037908	927	100140											
CNGA4	1262	broad.mit.edu	37	chr11	6262914	6262914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtacatcatccgagagGgtcaactggccgtggtggca	14	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6262914	T	T	6262914	3	4	102	1	0	0	0	0	1	0	0	0	3631	1232	43	2	1189	2	CNGA4	11	6262914	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	294306	6262914	128743602	928	100141											
CCKBR	887	broad.mit.edu	37	chr11	6291648	6291648	+	Intron	DEL	C	-	-													ccattgcccagaatcttcctCcagcttcccggagaattacc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6291648	-	-	6291648	6	5	102	0	1	1	0	1	0	0	0	0	2909	870	30	0		0	CCKBR	11	6291648	Intron	DEL	C	TCGA-38-4631-01A-01D-1753-08	28734	6291648	128714868	929	100142											
DCHS1	8642	broad.mit.edu	37	chr11	6651268	6651268	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagtggccgtccccgccaGatgccagccgataggacacg	14	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6651268	A	A	6651268	3	1	102	1	0	0	0	0	1	0	0	0	4320	942	33	4	5187	4	DCHS1	11	6651268	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	359620	6651268	128355248	930	100143											
OR2D3	120775	broad.mit.edu	37	chr11	6943155	6943155	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaccccataatttatagctTgaggaacaaagatgtcaaag	8	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6943155	G	G	6943155	3	3	102	1	0	0	0	0	1	0	0	0	11089	1821	63	5	925	5	OR2D3	11	6943155	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	291887	6943155	128063361	931	100144											
ZNF215	7762	broad.mit.edu	37	chr11	6976861	6976861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataccttatacagttcagcCtccatttcctattgaagcag	5	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6976861	A	A	6976861	1	1	102	0	1	0	0	0	0	0	0	0	17897	696	24	2		2	ZNF215	11	6976861	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	33706	6976861	128029655	932	100145											
NLRP14	338323	broad.mit.edu	37	chr11	7065106	7065106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagaaaatacatttgcttGtatcttctttctgccttaag	7	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7065106	T	T	7065106	3	4	102	1	0	0	0	0	1	0	0	0	10571	1377	48	3	1859	3	NLRP14	11	7065106	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	88245	7065106	127941410	933	100146											
SYT9	143425	broad.mit.edu	37	chr11	7488057	7488057	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagaggactgcttgtgcCaaggacaaaataggacaacc	12	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7488057	A	A	7488057	1	1	102	0	1	0	0	0	0	0	0	0	15600	609	21	2		2	SYT9	11	7488057	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	422951	7488057	127518459	934	100147											
TUB	7275	broad.mit.edu	37	chr11	8103114	8103114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtacgcgggcgccgggccGgggcgcccaccactcccgac	16	18	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8103114	T	T	8103114	1	4	102	0	1	0	0	0	0	0	0	0	16868	1131	39	1		1	TUB	11	8103114	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	615057	8103114	126903402	935	100148											
EIF4G2	1982	broad.mit.edu	37	chr11	10820818	10820818	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatacagggcactgacttgTagatcaacgtgatcatgaag	11	8	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10820818	C	C	10820818	2	2	102	1	0	0	0	0	0	0	0	1	5079	1625	57	5		5	EIF4G2	11	10820818	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	2717704	10820818	124185698	936	100149											
ARNTL	406	broad.mit.edu	37	chr11	13378644	13378644	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggataaaaaatgcaagGtaagcttggaccttattttg	11	4	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13378644	T	T	13378644	5	4	102	1	0	0	0	0	0	0	1	0	971	1275	44	3	247	3	ARNTL	11	13378644	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	2557826	13378644	121627872	937	100150											
SPON1	10418	broad.mit.edu	37	chr11	14063263	14063263	+	Intron	DEL	A	-	-													tttgtggtgtgattgcagggAaaaaaaaaaaagttctttac					rs113227652		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14063263	-	-	14063263	6	5	102	0	1	1	0	1	0	0	0	0	15200	261	9	0		0	SPON1	11	14063263	Intron	DEL	A	TCGA-38-4631-01A-01D-1753-08	684619	14063263	120943253	938	100151											
INSC	387755	broad.mit.edu	37	chr11	15222397	15222397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcgtagcactcttcaagGtttgccggcaggacagtttc	13	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15222397	T	T	15222397	3	4	102	1	0	0	0	0	1	0	0	0	7834	1261	44	3	888	3	INSC	11	15222397	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1159134	15222397	119784119	939	100152											
USH1C	10083	broad.mit.edu	37	chr11	17542673	17542673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaatcaagcaaagtcccCgagcttgtattctaaattga	8	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17542673	A	A	17542673	1	1	102	0	1	0	0	0	0	0	0	0	17160	667	23	1		1	USH1C	11	17542673	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2320276	17542673	117463843	940	100153											
MRGPRX3	117195	broad.mit.edu	37	chr11	18159298	18159298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttcattacaatcgcgtgGctggtttttttatgtgtggt	11	5	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18159298	T	T	18159298	3	4	102	1	0	0	0	0	1	0	0	0	9862	1212	42	3	551	3	MRGPRX3	11	18159298	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	616625	18159298	116847218	941	100154											
LDHAL6A	160287	broad.mit.edu	37	chr11	18485532	18485532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgatgaacttgtccttGtggatgttgatgaaggcaaa	13	4	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18485532	T	T	18485532	3	4	102	1	0	0	0	0	1	0	0	0	8771	1377	48	3	157	3	LDHAL6A	11	18485532	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	326234	18485532	116520984	942	100155											
SLC17A6	57084	broad.mit.edu	37	chr11	22380969	22380969	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatttcagggttttcggaGctgccatacttcttacctct	7	11	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22380969	A	A	22380969	3	1	102	1	0	0	0	0	1	0	0	0	14534	971	34	4	483	4	SLC17A6	11	22380969	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3895437	22380969	112625547	943	100156											
LIN7C	55327	broad.mit.edu	37	chr11	27521133	27521133	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctgaaagaaagttttacAtattaaaaatatgactttta	5	4	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27521133	G	G	27521133	1	3	102	0	1	0	0	0	0	0	0	0	8885	232	8	5		5	LIN7C	11	27521133	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	5140164	27521133	107485383	944	100157											
KIF18A	81930	broad.mit.edu	37	chr11	28119595	28119595	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttttactttcatgcaaaAcaactggcatgtagtattca	6	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28119595	T	T	28119595	1	4	102	0	1	0	0	0	0	0	0	0	8350	58	2	5		5	KIF18A	11	28119595	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	598462	28119595	106886921	945	100158											
KCNA4	3739	broad.mit.edu	37	chr11	30033943	30033943	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctctgccggtagtgggCtttcttcttctcagaccgct	11	13	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30033943	T	T	30033943	3	4	102	1	0	0	0	0	1	0	0	0	8075	797	28	4	1682	4	KCNA4	11	30033943	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1914348	30033943	104972573	946	100159											
PAX6	5080	broad.mit.edu	37	chr11	31815482	31815482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacctttttattatattaGtcctataaataaatagtact	3	5	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31815482	T	T	31815482	1	4	102	0	1	0	0	0	0	0	0	0	11577	1044	36	3		3	PAX6	11	31815482	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1781539	31815482	103191034	947	100160											
ABTB2	25841	broad.mit.edu	37	chr11	34184115	34184115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtgtgcatgcccgtgaGgcctcacccagtgccctcag	13	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34184115	T	T	34184115	1	4	102	0	1	0	0	0	0	0	0	0	103	1015	35	2		2	ABTB2	11	34184115	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2368633	34184115	100822401	948	100161											
PAMR1	25891	broad.mit.edu	37	chr11	35492401	35492401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacggagggaagcagatGggccctggacagtcctgaga	18	8	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35492401	T	T	35492401	1	4	102	0	1	0	0	0	0	0	0	0	11507	1363	47	2		2	PAMR1	11	35492401	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1308286	35492401	99514115	949	100162											
PRDM11	56981	broad.mit.edu	37	chr11	45117403	45117403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccctgatgatcgtggagtGccgggcctgcctgagatgct	14	11	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45117403	T	T	45117403	3	4	102	1	0	0	0	0	1	0	0	0	12558	1319	46	3	49	3	PRDM11	11	45117403	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	9625002	45117403	89889113	950	100163											
CHST1	8534	broad.mit.edu	37	chr11	45671409	45671409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgccacttctcggccgtGgccgccgagtttcgcacggt	13	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45671409	T	T	45671409	2	4	102	1	0	0	0	0	0	0	0	1	3428	1335	47	2		2	CHST1	11	45671409	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	554006	45671409	89335107	951	100164											
CHST1	8534	broad.mit.edu	37	chr11	45672154	45672154	+	Frame_Shift_Del	DEL	C	-	-													gccggtcggccgggctcttgCcctgggtgaagcgggggatg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45672154	-	-	45672154	7	5	102	1	0	1	0	1	0	0	0	0	3428	739	26	0	919	0	CHST1	11	45672154	Frame_Shift_Del	DEL	C	TCGA-38-4631-01A-01D-1753-08	745	45672154	89334362	952	100165											
C11orf94	143678	broad.mit.edu	37	chr11	45928102	45928102	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctttgtcacacatggtatCtttatgagggccttgggtca	11	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45928102	T	T	45928102	1	4	102	0	1	0	0	0	0	0	0	0	1686	928	32	4		4	C11orf94	11	45928102	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	255948	45928102	89078414	953	100166											
CKAP5	9793	broad.mit.edu	37	chr11	46784048	46784048	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcaactcatcactctcaCagtctaaatcaggaggttgg	9	10	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46784048	A	A	46784048	1	1	102	0	1	0	0	0	0	0	0	0	3476	493	17	3		3	CKAP5	11	46784048	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	855946	46784048	88222468	954	100167											
MADD	8567	broad.mit.edu	37	chr11	47345865	47345865	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcatggagcgcgctgccgCccgacagcaaagcatcaaac	11	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47345865	T	T	47345865	3	4	102	1	0	0	0	0	1	0	0	0	9240	739	26	4	4714	4	MADD	11	47345865	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	561817	47345865	87660651	955	100168											
OR4A5	81318	broad.mit.edu	37	chr11	51411781	51411781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaaggttgaaaatgacCatacagattgctccactatt	7	8	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51411781	A	A	51411781	3	1	102	1	0	0	0	0	1	0	0	0	11137	594	21	2	336	2	OR4A5	11	51411781	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4065916	51411781	83594735	956	100169											
OR4A15	81328	broad.mit.edu	37	chr11	55136162	55136162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaaaagctttctacacctGtgcatcccacgtcactgtgg	8	13	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55136162	T	T	55136162	3	4	102	1	0	0	0	0	1	0	0	0	11134	1377	48	3	805	3	OR4A15	11	55136162	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3724381	55136162	79870354	957	100170											
OR4C6	219432	broad.mit.edu	37	chr11	55432949	55432949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccagctgtttgtggagCatttctttggtggtgtgggg	15	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55432949	A	A	55432949	3	1	102	1	0	0	0	0	1	0	0	0	11146	710	25	3	309	3	OR4C6	11	55432949	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	296787	55432949	79573567	958	100171											
OR5D14	219436	broad.mit.edu	37	chr11	55563911	55563911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaccctctgatctacagcCtaaggaataaagacgtgaag	9	9	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563911	A	A	55563911	3	1	102	1	0	0	0	0	1	0	0	0	11249	680	24	2	882	2	OR5D14	11	55563911	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	130962	55563911	79442605	959	100172											
OR5L2	26338	broad.mit.edu	37	chr11	55594726	55594726	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaactgcaccactgtggctgAgttcattctccttggactat	8	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55594726	T	T	55594726	3	4	102	1	0	0	0	0	1	0	0	0	11265	304	11	5	34	5	OR5L2	11	55594726	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	30815	55594726	79411790	960	100173											
OR5W2	390148	broad.mit.edu	37	chr11	55682124	55682124	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacagtctagaacttgacTttccaagatatcaaaaaaaa	5	7	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55682124	A	A	55682124	1	1	102	0	1	0	0	0	0	0	0	0	11279	1624	56	5		5	OR5W2	11	55682124	5'Flank	SNP	T	TCGA-38-4631-01A-01D-1753-08	87398	55682124	79324392	961	100174											
OR5M8	219484	broad.mit.edu	37	chr11	56258455	56258455	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttggacattctgctgccaTaaagcagagggttgcagatg	12	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56258455	A	A	56258455	3	1	102	1	0	0	0	0	1	0	0	0	11270	1406	49	5	547	5	OR5M8	11	56258455	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	576331	56258455	78748061	962	100175											
OR10Q1	219960	broad.mit.edu	37	chr11	57995501	57995501	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagggggtgacaaaggtgtAgaccaacgcgatttggctgt	15	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995501	T	T	57995501	3	4	102	1	0	0	0	0	1	0	0	0	11010	420	15	5	116	5	OR10Q1	11	57995501	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1737046	57995501	77011015	963	100176											
OR5B3	441608	broad.mit.edu	37	chr11	58169980	58169980	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattttgccttctcaacaacTttcttgaatgcactcttcac	3	12	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58169980	A	A	58169980	3	1	102	1	0	0	0	0	1	0	0	0	11246	1606	56	5	43	5	OR5B3	11	58169980	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	174479	58169980	76836536	964	100177											
OR5B12	390191	broad.mit.edu	37	chr11	58207585	58207585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggtcatcagttaaccCcacaaggatgaattcagtca	8	10	5	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58207585	A	A	58207585	3	1	102	1	0	0	0	0	1	0	0	0	11242	623	22	2	908	2	OR5B12	11	58207585	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	37605	58207585	76798931	965	100178											
OSBP	5007	broad.mit.edu	37	chr11	59345602	59345602	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaagtggtatctgggcaGcatgcatgctgatactcacg	12	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59345602	A	A	59345602	1	1	102	0	1	0	0	0	0	0	0	0	11367	986	34	4		4	OSBP	11	59345602	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1138017	59345602	75660914	966	100179											
SLC15A3	51296	broad.mit.edu	37	chr11	60714008	60714008	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagcccctccttacctggCcgagtgtcgttgccacagct	10	16	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60714008	G	G	60714008	3	3	102	1	0	0	0	0	1	0	0	0	14513	739	26	4	929	4	SLC15A3	11	60714008	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1368406	60714008	74292508	967	100180											
GANAB	23193	broad.mit.edu	37	chr11	62402222	62402222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaccaccgtctcctcccCgtgccagacctcacaacacc	4	23	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62402222	A	A	62402222	1	1	102	0	1	0	0	0	0	0	0	0	6295	667	23	1		1	GANAB	11	62402222	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1688214	62402222	72604294	968	100181											
NXF1	10482	broad.mit.edu	37	chr11	62564934	62564934	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcccagaactttgggaGgccgaggcaggcagatggct	16	9	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62564934	A	A	62564934	1	1	102	0	1	0	0	0	0	0	0	0	10877	1015	35	4		4	NXF1	11	62564934	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	162712	62564934	72441582	969	100182											
HRASLS5	117245	broad.mit.edu	37	chr11	63233573	63233573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatcatcagagcaaatgGggtcacacctgctggctccg	11	13	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63233573	T	T	63233573	1	4	102	0	1	0	0	0	0	0	0	0	7418	1247	43	2		2	HRASLS5	11	63233573	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	668639	63233573	71772943	970	100183											
RTN3	10313	broad.mit.edu	37	chr11	63487648	63487649	+	Missense_Mutation	DNP	GG	TT	TT													tctaaaaactttgaagaattGgtcagtgactctgagctgca					rs150093726		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	63487649	TT	TT	63487648	3	4	102	1	0	0	0	0	1	0	0	0	13838	1339	47	2	1684	2	RTN3	11	63487648	Missense_Mutation	DNP	GG	TCGA-38-4631-01A-01D-1753-08	254075	63487648	71518868	971	100184											
MARK2	2011	broad.mit.edu	37	chr11	63666130	63666130	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacgctctaccttgtcatgGagtacgctagtggcggtagg	13	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63666130	T	T	63666130	4	4	102	1	0	0	0	0	0	1	0	0	9405	1175	41	3	406	3	MARK2	11	63666130	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	178482	63666130	71340386	972	100185											
SLC22A12	116085	broad.mit.edu	37	chr11	64368152	64368152	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcctggcccggcgtgcagGatcaaggctgtgggcacaca	17	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64368152	A	A	64368152	1	1	102	0	1	0	0	0	0	0	0	0	14556	1189	41	4		4	SLC22A12	11	64368152	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	702022	64368152	70638364	973	100186											
NRXN2	9379	broad.mit.edu	37	chr11	64428680	64428680	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacatcctgactctgccaaGaaggccccccaccttgtgtg	10	15	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64428680	C	C	64428680	1	2	102	0	1	0	0	0	0	0	0	0	10761	957	33	4		4	NRXN2	11	64428680	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	60528	64428680	70577836	974	100187											
SF1	7536	broad.mit.edu	37	chr11	64537758	64537758	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtggcttgaaatccggaTtgagtgcaaccatctctgtg	12	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64537758	C	C	64537758	3	2	102	1	0	0	0	0	1	0	0	0	14258	1493	52	5	1738	5	SF1	11	64537758	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	109078	64537758	70468758	975	100188											
ATG2A	23130	broad.mit.edu	37	chr11	64667917	64667917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacatcgagaacaaggccCgttgttctatgacacacacg	10	11	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64667917	A	A	64667917	1	1	102	0	1	0	0	0	0	0	0	0	1097	667	23	1		1	ATG2A	11	64667917	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	130159	64667917	70338599	976	100189											
SSSCA1	10534	broad.mit.edu	37	chr11	65338163	65338163	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcaagatcgcatctcccgGctcatgggcgactatctgct	11	14	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65338163	A	A	65338163	2	1	102	1	0	0	0	0	0	0	0	1	15313	1190	42	4		4	SSSCA1	11	65338163	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	670246	65338163	69668353	977	100190											
FGF3	2248	broad.mit.edu	37	chr11	69631260	69631260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctgaggcccagctggccCtgcccaaagccacaccccgg	12	19	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69631260	A	A	69631260	1	1	102	0	1	0	0	0	0	0	0	0	5910	696	24	2		2	FGF3	11	69631260	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4293097	69631260	65375256	978	100191											
DLG2	1740	broad.mit.edu	37	chr11	83500978	83500978	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcaatctctttttcttAttcccaaagtgcaagatgca	5	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83500978	T	T	83500978	1	4	102	0	1	0	0	0	0	0	0	0	4595	464	16	5		5	DLG2	11	83500978	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	13869718	83500978	51505538	979	100192											
CCDC89	220388	broad.mit.edu	37	chr11	85396024	85396024	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatttgaattctgaattgCaggccagaggaagcagaaac	10	6	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85396024	A	A	85396024	1	1	102	0	1	0	0	0	0	0	0	0	2894	725	25	3		3	CCDC89	11	85396024	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	1895046	85396024	49610492	980	100193											
NOX4	50507	broad.mit.edu	37	chr11	89155032	89155032	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcattaccccattttgggGcacaaatggttttaaataca	6	8	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89155032	T	T	89155032	1	4	102	0	1	0	0	0	0	0	0	0	10653	1218	42	3		3	NOX4	11	89155032	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3759008	89155032	45851484	981	100194											
NAALAD2	10003	broad.mit.edu	37	chr11	89891409	89891409	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaaatattattacggtAtagttttcttgttggatatg	9	3	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89891409	G	G	89891409	1	3	102	0	1	0	0	0	0	0	0	0	10222	464	16	5		5	NAALAD2	11	89891409	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	736377	89891409	45115107	982	100195											
FAT3	120114	broad.mit.edu	37	chr11	92616381	92616381	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaacctggataagatcgtGgacgggctgggaggcgagca	17	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92616381	T	T	92616381	2	4	102	1	0	0	0	0	0	0	0	1	5748	1335	47	2		2	FAT3	11	92616381	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	2724972	92616381	42390135	983	100196											
FOLR4	390243	broad.mit.edu	37	chr11	94040669	94040669	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagctgacctgtgtgagaaGacttggagcaattccttcaa	10	10	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94040669	T	T	94040669	3	4	102	1	0	0	0	0	1	0	0	0	6042	933	33	3	557	3	FOLR4	11	94040669	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1424288	94040669	40965847	984	100197											
CNTN5	53942	broad.mit.edu	37	chr11	100208004	100208004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttttcagaacaaaaagagCctggtagcctttataaatca	6	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100208004	G	G	100208004	1	3	102	0	1	0	0	0	0	0	0	0	3676	754	26	4		4	CNTN5	11	100208004	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	6167335	100208004	34798512	985	100198											
TMEM133	83935	broad.mit.edu	37	chr11	100863563	100863563	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagccattggcagaaaattGatctgcatgtcctagaccaa	8	9	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100863563	A	A	100863563	1	1	102	0	1	0	0	0	0	0	0	0	16172	1305	45	4		4	TMEM133	11	100863563	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	655559	100863563	34142953	986	100199											
TRPC6	7225	broad.mit.edu	37	chr11	101375480	101375480	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctaaccttctccccttctCacggagaactgtctgccgcc	7	17	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101375480	A	A	101375480	4	1	102	1	0	0	0	0	0	1	0	0	16708	835	29	3	2623	3	TRPC6	11	101375480	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	511917	101375480	33631036	987	100200											
BIRC2	329	broad.mit.edu	37	chr11	102239004	102239004	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccataggtttatgtttgtgGaatttaatattagcatgttt	8	3	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102239004	T	T	102239004	1	4	102	0	1	0	0	0	0	0	0	0	1441	1189	41	3		3	BIRC2	11	102239004	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	863524	102239004	32767512	988	100201											
MMP12	4321	broad.mit.edu	37	chr11	102738758	102738758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagaatggccaagacctaagGaatggccaatctcgtgaaca	10	9	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102738758	T	T	102738758	3	4	102	1	0	0	0	0	1	0	0	0	9744	1174	41	3	768	3	MMP12	11	102738758	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	499754	102738758	32267758	989	100202											
MMP12	4321	broad.mit.edu	37	chr11	102745613	102745613	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcttgtagagctgttcaGgggaagagctccagaagcag	15	8	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102745613	A	A	102745613	2	1	102	1	0	0	0	0	0	0	0	1	9744	991	35	4		4	MMP12	11	102745613	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	6855	102745613	32260903	990	100203											
DDI1	414301	broad.mit.edu	37	chr11	103907539	103907539	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgctagcccggcccgccCgggcccccgccatgctgatc	11	21	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103907539	A	A	103907539	1	1	102	0	1	0	0	0	0	0	0	0	4361	667	23	1		1	DDI1	11	103907539	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	1161926	103907539	31098977	991	100204											
CASP1	834	broad.mit.edu	37	chr11	104937574	104937574	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctatcaaactcttcgttgcaGataatgagcaagacgtgtgc	9	9	2	3	rs61891077	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104937574	C	C	104937574	1	2	102	0	1	0	0	0	0	0	0	0	2694	957	33	4		4	CASP1	11	104937574	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1030035	104937574	30068942	992	100205											
CWF19L2	143884	broad.mit.edu	37	chr11	107219763	107219763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaagagaccgtacgttgGgtaaacataaataaacctat	8	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107219763	A	A	107219763	3	1	102	1	0	0	0	0	1	0	0	0	4105	1232	43	4	602	4	CWF19L2	11	107219763	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2282189	107219763	27786753	993	100206											
ARHGAP20	57569	broad.mit.edu	37	chr11	110450210	110450210	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggctctttcccaaggcaGagaaccagaagagctctgac	11	11	2	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110450210	A	A	110450210	2	1	102	1	0	0	0	0	0	0	0	1	872	933	33	4		4	ARHGAP20	11	110450210	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3230447	110450210	24556306	994	100207											
TTC12	54970	broad.mit.edu	37	chr11	113211339	113211339	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgcagcgagacaccagCcagccagtttgggagtctga	14	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113211339	G	G	113211339	1	3	102	0	1	0	0	0	0	0	0	0	16805	754	26	4		4	TTC12	11	113211339	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2761129	113211339	21795177	995	100208											
ANKK1	255239	broad.mit.edu	37	chr11	113267990	113267990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctgtcactgctgcagagtCgtgtggcagtcccagagagc	14	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113267990	A	A	113267990	3	1	102	1	0	0	0	0	1	0	0	0	631	884	31	3	905	3	ANKK1	11	113267990	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	56651	113267990	21738526	996	100209											
CADM1	23705	broad.mit.edu	37	chr11	115049566	115049566	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaagccccggcgacactgtCtccagggtcagagggtcacc	13	14	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115049566	A	A	115049566	1	1	102	0	1	0	0	0	0	0	0	0	2592	928	32	3		3	CADM1	11	115049566	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1781576	115049566	19956950	997	100210											
APOA4	337	broad.mit.edu	37	chr11	116693692	116693692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccaatgggcccaccactGggactgggccagctctcctg	12	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116693692	T	T	116693692	1	4	102	0	1	0	0	0	0	0	0	0	785	1363	47	2		2	APOA4	11	116693692	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1644126	116693692	18312824	998	100211											
CEP164	22897	broad.mit.edu	37	chr11	117209310	117209310	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcccagatgagtcatggctgGacgacccctccgcataggag	13	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117209310	C	C	117209310	3	2	102	1	0	0	0	0	1	0	0	0	3279	1174	41	4	10	4	CEP164	11	117209310	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	515618	117209310	17797206	999	100212											
PHLDB1	23187	broad.mit.edu	37	chr11	118498933	118498933	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccttaagtccatctctgtCccggcgagctctctccccgc	7	20	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118498933	T	T	118498933	3	4	102	1	0	0	0	0	1	0	0	0	11946	855	30	4	1412	4	PHLDB1	11	118498933	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1289623	118498933	16507583	1000	100213											
DDX6	1656	broad.mit.edu	37	chr11	118636162	118636162	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaagaagctatagaaatacTgcgccttatgatgcagtggc	10	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118636162	A	A	118636162	1	1	102	0	1	0	0	0	0	0	0	0	4410	1595	55	5		5	DDX6	11	118636162	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	137229	118636162	16370354	1001	100214											
POU2F3	25833	broad.mit.edu	37	chr11	120180336	120180336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctgccaagcactggagGgacatgatgcttggagggga	16	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120180336	T	T	120180336	1	4	102	0	1	0	0	0	0	0	0	0	12369	1247	43	2		2	POU2F3	11	120180336	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1544174	120180336	14826180	1002	100215											
GRAMD1B	57476	broad.mit.edu	37	chr11	123468920	123468920	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttgggtcctcggtaggtGtagtttccacagatctcaca	11	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123468920	A	A	123468920	1	1	102	0	1	0	0	0	0	0	0	0	6814	1392	48	4		4	GRAMD1B	11	123468920	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3288584	123468920	11537596	1003	100216											
VSIG2	23584	broad.mit.edu	37	chr11	124618406	124618406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggagcaccccaatcagagctCcggccactcggccttgggag	13	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124618406	T	T	124618406	3	4	102	1	0	0	0	0	1	0	0	0	17351	855	30	4	260	4	VSIG2	11	124618406	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1149486	124618406	10388110	1004	100217											
HEPN1	641654	broad.mit.edu	37	chr11	124789651	124789651	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggtgtggaggtgatggGtaactggggccttggaattg	18	5	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124789651	A	A	124789651	3	1	102	1	0	0	0	0	1	0	0	0	7123	1261	44	4	7	4	HEPN1	11	124789651	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	171245	124789651	10216865	1005	100218											
ADAMTS8	11095	broad.mit.edu	37	chr11	130276060	130276060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacacccttagaccagtgGctgcccagcccaggtcacga	11	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130276060	T	T	130276060	1	4	102	0	1	0	0	0	0	0	0	0	272	1218	42	3		3	ADAMTS8	11	130276060	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5486409	130276060	4730456	1006	100219											
CACNA2D4	93589	broad.mit.edu	37	chr12	1949781	1949781	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagagtgcacttccacccatCccacattccaccggcaggac	7	17	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1949781	T	T	1949781	1	4	102	0	1	0	0	0	0	0	0	0	2577	870	30	4		4	CACNA2D4	12	1949781	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08		1949781	131902114	1007	100220											
PRMT8	56341	broad.mit.edu	37	chr12	3702357	3702357	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgcgttagcacacgtgGgaagctgcagagagcaacga	13	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3702357	T	T	3702357	1	4	102	0	1	0	0	0	0	0	0	0	12648	1247	43	2		2	PRMT8	12	3702357	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	1752576	3702357	130149538	1008	100221											
DYRK4	8798	broad.mit.edu	37	chr12	4700362	4700362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagatgccggcctcagagCtcaaggcttcagaaatacct	9	12	4	3	rs111557443		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4700362	A	A	4700362	3	1	102	1	0	0	0	0	1	0	0	0	4898	797	28	3	18	3	DYRK4	12	4700362	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	998005	4700362	129151533	1009	100222											
ANO2	57101	broad.mit.edu	37	chr12	5961104	5961104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggaaatcataacatggGcattagagttttgctcacct	10	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5961104	T	T	5961104	1	4	102	0	1	0	0	0	0	0	0	0	697	1218	42	3		3	ANO2	12	5961104	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1260742	5961104	127890791	1010	100223											
CD163L1	283316	broad.mit.edu	37	chr12	7521407	7521407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgataccactggctgcgacCcacagactcatatttctgca	7	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7521407	A	A	7521407	1	1	102	0	1	0	0	0	0	0	0	0	2998	638	22	2		2	CD163L1	12	7521407	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1560303	7521407	126330488	1011	100224											
KLRB1	3820	broad.mit.edu	37	chr12	9752258	9752258	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccagaaaagcagaatgatAagaatatcttaacatatgga	7	5	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9752258	T	T	9752258	1	4	102	0	1	0	0	0	0	0	0	0	8485	377	13	5		5	KLRB1	12	9752258	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2230851	9752258	124099637	1012	100225											
ETV6	2120	broad.mit.edu	37	chr12	12037475	12037475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagaatccaaaatattccGgatagtggatcccaacggac	8	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12037475	T	T	12037475	3	4	102	1	0	0	0	0	1	0	0	0	5325	1116	39	1	1128	1	ETV6	12	12037475	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2285217	12037475	121814420	1013	100226											
MGST1	4257	broad.mit.edu	37	chr12	16510579	16510579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgtagcatttggcaaagGagaaaatgccaagaagtatc	11	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16510579	T	T	16510579	3	4	102	1	0	0	0	0	1	0	0	0	9653	1174	41	3	173	3	MGST1	12	16510579	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4473104	16510579	117341316	1014	100227											
PDE3A	5139	broad.mit.edu	37	chr12	20705774	20705774	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgttccggcccatcacgacCgtgtgccagcacaacgtgtg	12	14	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20705774	G	G	20705774	1	3	102	0	1	0	0	0	0	0	0	0	11731	667	23	4		4	PDE3A	12	20705774	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4195195	20705774	113146121	1015	100228											
SLCO1B1	10599	broad.mit.edu	37	chr12	21350125	21350125	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaccaaaaatgtgactggtAagtatttaacattcattgtc	6	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21350125	T	T	21350125	1	4	102	0	1	0	0	0	0	0	0	0	14837	377	13	5		5	SLCO1B1	12	21350125	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	644351	21350125	112501770	1016	100229											
SOX5	6660	broad.mit.edu	37	chr12	23737536	23737536	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctggtgaacccactataActgactgtttaatgagtaat	8	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23737536	T	T	23737536	1	4	102	0	1	0	0	0	0	0	0	0	15068	58	2	5		5	SOX5	12	23737536	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2387411	23737536	110114359	1017	100230											
CASC1	55259	broad.mit.edu	37	chr12	25347860	25347860	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaaagccattgctgagaaGagggccgacccaccccaagg	13	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25347860	A	A	25347860	1	1	102	0	1	0	0	0	0	0	0	0	2686	942	33	4		4	CASC1	12	25347860	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1610324	25347860	108504035	1018	100231											
TMEM117	84216	broad.mit.edu	37	chr12	44403633	44403633	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttctgcacccagttctgGgtatccttgtgcaaaatggt	10	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44403633	C	C	44403633	1	2	102	0	1	0	0	0	0	0	0	0	16154	1247	43	4		4	TMEM117	12	44403633	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	19055773	44403633	89448262	1019	100232											
NELL2	4753	broad.mit.edu	37	chr12	45000903	45000903	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcatggattactttaTgcattggcataaaaattcat	5	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45000903	C	C	45000903	1	2	102	0	1	0	0	0	0	0	0	0	10429	1479	51	5		5	NELL2	12	45000903	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	597270	45000903	88850992	1020	100233											
ARID2	196528	broad.mit.edu	37	chr12	46233111	46233111	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgctttttatttattttaGacatgttagtgtgtctggtt	8	3	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46233111	T	T	46233111	5	4	102	1	0	0	0	0	0	0	1	0	917	956	33	3	1372	3	ARID2	12	46233111	Splice_Site	SNP	G	TCGA-38-4631-01A-01D-1753-08	1232208	46233111	87618784	1021	100234											
SLC38A1	81539	broad.mit.edu	37	chr12	46592512	46592513	+	Missense_Mutation	DNP	CG	AA	AA													ctgatatttgtgaaggaggtCggactgcacgttgtctaaaa					rs138242331	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	46592513	AA	AA	46592512	3	1	102	1	0	0	0	0	1	0	0	0	14715	884	31	3	461	3	SLC38A1	12	46592512	Missense_Mutation	DNP	CG	TCGA-38-4631-01A-01D-1753-08	359401	46592512	87259383	1022	100235											
SLC38A4	55089	broad.mit.edu	37	chr12	47173648	47173648	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattgaggtaccattctctAgaagtgagagacaaggatat	10	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47173648	G	G	47173648	1	3	102	0	1	0	0	0	0	0	0	0	14720	435	15	5		5	SLC38A4	12	47173648	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	581136	47173648	86678247	1023	100236											
RPAP3	79657	broad.mit.edu	37	chr12	48063795	48063795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcagttcaaaaaattagCatgatgagtacaaatcagaa	8	5	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48063795	A	A	48063795	1	1	102	0	1	0	0	0	0	0	0	0	13654	725	25	3		3	RPAP3	12	48063795	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	890147	48063795	85788100	1024	100237											
RPAP3	79657	broad.mit.edu	37	chr12	48091368	48091368	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaaaaaaacaaaacctaActaattagtaccttttcttt	2	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48091368	C	C	48091368	1	2	102	0	1	0	0	0	0	0	0	0	13654	58	2	5		5	RPAP3	12	48091368	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	27573	48091368	85760527	1025	100238											
PRKAG1	5571	broad.mit.edu	37	chr12	49406921	49406929	+	Intron	DEL	TTAACCTGG	-	-													gataagaaaacagattcagcTtaacctggttccatccattt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49406929	-	-	49406921	6	5	102	0	1	1	0	1	0	0	0	0	12606	1624	56	0		0	PRKAG1	12	49406921	Intron	DEL	TTAACCTGG	TCGA-38-4631-01A-01D-1753-08	1315553	49406921	84444974	1026	100239											
MLL2	8085	broad.mit.edu	37	chr12	49444341	49444341	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaggatgggagaagccggCcccactggggagcctggaga	17	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49444341	T	T	49444341	2	4	102	1	0	0	0	0	0	0	0	1	9714	726	26	4		4	MLL2	12	49444341	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	37420	49444341	84407554	1027	100240											
BIN2	51411	broad.mit.edu	37	chr12	51696810	51696810	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtatggctattgttttccaCcccaaacctcctagtagctg	8	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51696810	T	T	51696810	1	4	102	0	1	0	0	0	0	0	0	0	1439	522	18	4		4	BIN2	12	51696810	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2252469	51696810	82155085	1028	100241											
CELA1	1990	broad.mit.edu	37	chr12	51737560	51737560	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacgcagtgagcagctgtCatcacccagttctgtctgat	9	13	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51737560	A	A	51737560	3	1	102	1	0	0	0	0	1	0	0	0	3240	826	29	3	623	3	CELA1	12	51737560	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	40750	51737560	82114335	1029	100242											
ANKRD33	341405	broad.mit.edu	37	chr12	52282598	52282598	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccaggtggacagcaatgGgagggtgagatgtcctggct	16	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52282598	T	T	52282598	1	4	102	0	1	0	0	0	0	0	0	0	661	1232	43	2		2	ANKRD33	12	52282598	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	545038	52282598	81569297	1030	100243											
NR4A1	3164	broad.mit.edu	37	chr12	52449072	52449072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacctgtggtctccccctGggttctcctcctagctaagt	11	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52449072	T	T	52449072	1	4	102	0	1	0	0	0	0	0	0	0	10727	1363	47	2		2	NR4A1	12	52449072	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	166474	52449072	81402823	1031	100244											
KRT75	9119	broad.mit.edu	37	chr12	52818493	52818493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtttccacctccaatGctgctgccgcttccatagcc	7	18	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52818493	T	T	52818493	3	4	102	1	0	0	0	0	1	0	0	0	8559	1310	46	3	195	3	KRT75	12	52818493	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	369421	52818493	81033402	1032	100245											
KRT6B	3854	broad.mit.edu	37	chr12	52843562	52843563	+	Missense_Mutation	DNP	GG	TT	TT													tgcatcatacaaggctctcaGgaagttgatctcatctgtaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	52843563	TT	TT	52843562	3	4	102	1	0	0	0	0	1	0	0	0	8552	991	35	2	826	2	KRT6B	12	52843562	Missense_Mutation	DNP	GG	TCGA-38-4631-01A-01D-1753-08	25069	52843562	81008333	1033	100246											
KRT5	3852	broad.mit.edu	37	chr12	52913777	52913777	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgaaaccaaatccactacCggcaccacctccaaagccat	5	18	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52913777	T	T	52913777	3	4	102	1	0	0	0	0	1	0	0	0	8550	652	23	4	1504	4	KRT5	12	52913777	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	70215	52913777	80938118	1034	100247											
AMHR2	269	broad.mit.edu	37	chr12	53817785	53817785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtaagtgtctacagggaGgggaagggtctctccatcca	14	8	2	0	rs68158705		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53817785	T	T	53817785	1	4	102	0	1	0	0	0	0	0	0	0	573	1015	35	2		2	AMHR2	12	53817785	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	904008	53817785	80034110	1035	100248											
TARBP2	6895	broad.mit.edu	37	chr12	53895653	53895653	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccagcctgcacctccacTtggaacccagccaatggatg	8	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53895653	C	C	53895653	1	2	102	0	1	0	0	0	0	0	0	0	15675	1624	56	5		5	TARBP2	12	53895653	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	77868	53895653	79956242	1036	100249											
KIAA0748	9840	broad.mit.edu	37	chr12	55357547	55357547	+	Frame_Shift_Del	DEL	C	-	-													ggccagcatgaggcaggggtCttccatttcaatcctccgca							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55357547	-	-	55357547	7	5	102	1	0	1	0	1	0	0	0	0	8260	913	32	0	943	0	KIAA0748	12	55357547	Frame_Shift_Del	DEL	C	TCGA-38-4631-01A-01D-1753-08	1461894	55357547	78494348	1037	100250											
MYO1A	4640	broad.mit.edu	37	chr12	57437614	57437615	+	Intron	DNP	GA	TT	TT													gaaattcagggtctgggtagGagctccagcaggctgggatg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	57437615	TT	TT	57437614	1	4	102	0	1	0	0	0	0	0	0	0	10162	1189	41	3		3	MYO1A	12	57437614	Intron	DNP	GA	TCGA-38-4631-01A-01D-1753-08	2080067	57437614	76414281	1038	100251											
LRP1	4035	broad.mit.edu	37	chr12	57572802	57572802	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggacaacaccacctgctAtggtaggagcccctccctcc	8	17	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57572802	G	G	57572802	3	3	102	1	0	0	0	0	1	0	0	0	9038	449	16	5	4846	5	LRP1	12	57572802	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	135188	57572802	76279093	1039	100252											
LRP1	4035	broad.mit.edu	37	chr12	57606328	57606328	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggacgagataggggaccCcttggcatagggccctgccc	15	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57606328	T	T	57606328	3	4	102	1	0	0	0	0	1	0	0	0	9038	623	22	4	13979	4	LRP1	12	57606328	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	33526	57606328	76245567	1040	100253											
GLI1	2735	broad.mit.edu	37	chr12	57864471	57864471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggctgctgaccgtcctGctccagctagagtccagagg	12	15	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57864471	T	T	57864471	3	4	102	1	0	0	0	0	1	0	0	0	6501	1319	46	3	1990	3	GLI1	12	57864471	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	258143	57864471	75987424	1041	100254											
KIF5A	3798	broad.mit.edu	37	chr12	57943921	57943921	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctccccaggcttcgccCgggcgccctcaactctgtcc	9	21	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57943921	A	A	57943921	1	1	102	0	1	0	0	0	0	0	0	0	8375	667	23	1		1	KIF5A	12	57943921	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	79450	57943921	75907974	1042	100255											
KIF5A	3798	broad.mit.edu	37	chr12	57970480	57970480	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaagtttgaagagctgGccttcccttccccctcatta	9	12	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57970480	C	C	57970480	1	2	102	0	1	0	0	0	0	0	0	0	8375	1218	42	4		4	KIF5A	12	57970480	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	26559	57970480	75881415	1043	100256											
KIF5A	3798	broad.mit.edu	37	chr12	57976868	57976868	+	Intron	DEL	G	-	-													tctatggagctgatcatggtGggtctcttcctccaggagtg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57976868	-	-	57976868	6	5	102	0	1	1	0	1	0	0	0	0	8375	1363	47	0		0	KIF5A	12	57976868	Intron	DEL	G	TCGA-38-4631-01A-01D-1753-08	6388	57976868	75875027	1044	100257											
CTDSP2	10106	broad.mit.edu	37	chr12	58220094	58220094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaggcagaccccccacCctctgggctgggtgtggtct	14	14	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58220094	A	A	58220094	1	1	102	0	1	0	0	0	0	0	0	0	4038	638	22	2		2	CTDSP2	12	58220094	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	243226	58220094	75631801	1045	100258											
FAM19A2	338811	broad.mit.edu	37	chr12	62148859	62148860	+	Intron	DNP	CC	AA	AA													aaagctttggacacttccccCcacccttctttttaattagc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	62148860	AA	AA	62148859	1	1	102	0	1	0	0	0	0	0	0	0	5579	638	22	2		2	FAM19A2	12	62148859	Intron	DNP	CC	TCGA-38-4631-01A-01D-1753-08	3928765	62148859	71703036	1046	100259											
C12orf66	144577	broad.mit.edu	37	chr12	64609388	64609388	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattttcataagagtgtggaGaaaaactctgagcttgtgtg	12	4	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64609388	T	T	64609388	1	4	102	0	1	0	0	0	0	0	0	0	1722	957	33	3		3	C12orf66	12	64609388	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2460529	64609388	69242507	1047	100260											
XPOT	11260	broad.mit.edu	37	chr12	64815186	64815186	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgcagctactaattcatGaggatgatgatatttcttct	8	6	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64815186	C	C	64815186	3	2	102	1	0	0	0	0	1	0	0	0	17577	1291	45	4	1045	4	XPOT	12	64815186	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	205798	64815186	69036709	1048	100261											
GRIP1	23426	broad.mit.edu	37	chr12	66962663	66962663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactctgctctgtcttatgCagttgagtaggttccagagg	12	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66962663	A	A	66962663	1	1	102	0	1	0	0	0	0	0	0	0	6853	725	25	3		3	GRIP1	12	66962663	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2147477	66962663	66889232	1049	100262											
NUP107	57122	broad.mit.edu	37	chr12	69103104	69103104	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcaggtatgactagaattTaaaatttttttttatgaaac	6	3	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69103104	A	A	69103104	1	1	102	0	1	0	0	0	0	0	0	0	10848	1769	61	5		5	NUP107	12	69103104	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	2140441	69103104	64748791	1050	100263											
PTPRR	5801	broad.mit.edu	37	chr12	71078133	71078133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcttcaacgaaatagctGggctagtacaaaagcaacac	8	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71078133	T	T	71078133	1	4	102	0	1	0	0	0	0	0	0	0	12918	1363	47	2		2	PTPRR	12	71078133	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1975029	71078133	62773762	1051	100264											
LGR5	8549	broad.mit.edu	37	chr12	71966695	71966695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcagttgcttagcctccGatcgctgtgagtatcacctc	9	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71966695	T	T	71966695	3	4	102	1	0	0	0	0	1	0	0	0	8829	1058	37	3	1252	3	LGR5	12	71966695	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	888562	71966695	61885200	1052	100265											
TRHDE	29953	broad.mit.edu	37	chr12	72969024	72969024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaatctatcccaaaaatGcttttttcagagcaccacag	5	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72969024	T	T	72969024	1	4	102	0	1	0	0	0	0	0	0	0	16603	1334	46	3		3	TRHDE	12	72969024	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1002329	72969024	60882871	1053	100266											
KCNC2	3747	broad.mit.edu	37	chr12	75434841	75434841	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctttaagtgcctcatgaaGacgcgaggatctcttccaag	10	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75434841	T	T	75434841	1	4	102	0	1	0	0	0	0	0	0	0	8085	957	33	3		3	KCNC2	12	75434841	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	2465817	75434841	58417054	1054	100267											
NAV3	89795	broad.mit.edu	37	chr12	78583961	78583961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaaaaaaacagaggatGcaattgccacttttaatgtg	10	5	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78583961	T	T	78583961	3	4	102	1	0	0	0	0	1	0	0	0	10279	1319	46	3	6317	3	NAV3	12	78583961	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3149120	78583961	55267934	1055	100268											
MYF6	4618	broad.mit.edu	37	chr12	81101537	81101537	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaactggctcctatttcttCtacttggatggggaaaatgt	10	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81101537	A	A	81101537	3	1	102	1	0	0	0	0	1	0	0	0	10122	912	32	3	41	3	MYF6	12	81101537	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2517576	81101537	52750358	1056	100269											
PPFIA2	8499	broad.mit.edu	37	chr12	81734915	81734915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcattctgagggctctagGggtaggaggaggagaagttt	17	4	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81734915	T	T	81734915	3	4	102	1	0	0	0	0	1	0	0	0	12406	1232	43	2	1490	2	PPFIA2	12	81734915	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	633378	81734915	52116980	1057	100270											
PPFIA2	8499	broad.mit.edu	37	chr12	81751860	81751860	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttgaagttaaaagattaaCctttggctcatctcttcgca	7	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81751860	G	G	81751860	5	3	102	1	0	0	0	0	0	0	1	0	12406	521	18	4	2067	4	PPFIA2	12	81751860	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	16945	81751860	52100035	1058	100271											
SLC6A15	55117	broad.mit.edu	37	chr12	85260837	85260837	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatgccataaacaaagcatAcagcaatattctccaaaatg	4	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85260837	T	T	85260837	3	4	102	1	0	0	0	0	1	0	0	0	14792	391	14	5	573	5	SLC6A15	12	85260837	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3508977	85260837	48591058	1059	100272											
LRRIQ1	84125	broad.mit.edu	37	chr12	85623409	85623409	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggttcatgaaacgactaGttccagaaatatgaaatggt	11	5	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85623409	C	C	85623409	3	2	102	1	0	0	0	0	1	0	0	0	9116	1029	36	4	5035	4	LRRIQ1	12	85623409	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	362572	85623409	48228486	1060	100273											
ALX1	8092	broad.mit.edu	37	chr12	85674298	85674298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccccagccggagccgccgCagcccttccgcaatcgaaaa	10	19	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85674298	A	A	85674298	1	1	102	0	1	0	0	0	0	0	0	0	556	725	25	3		3	ALX1	12	85674298	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	50889	85674298	48177597	1061	100274											
ALX1	8092	broad.mit.edu	37	chr12	85694889	85694889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaagtaagagaacaaaaGtgagaacatgtaaatgtaat	8	3	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85694889	T	T	85694889	1	4	102	0	1	0	0	0	0	0	0	0	556	1044	36	3		3	ALX1	12	85694889	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	20591	85694889	48157006	1062	100275											
MGAT4C	25834	broad.mit.edu	37	chr12	86383405	86383405	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatcgcatatataaaagtCaggtccttgtaaaatttcat	5	6	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86383405	T	T	86383405	1	4	102	0	1	0	0	0	0	0	0	0	9640	841	29	4		4	MGAT4C	12	86383405	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	688516	86383405	47468490	1063	100276											
CCDC38	120935	broad.mit.edu	37	chr12	96292020	96292020	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaaatcttgatggacaGgttacttattttttaaaatt	7	4	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96292020	A	A	96292020	1	1	102	0	1	0	0	0	0	0	0	0	2837	1015	35	4		4	CCDC38	12	96292020	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	9908615	96292020	37559875	1064	100277											
CCDC38	120935	broad.mit.edu	37	chr12	96292528	96292528	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactaggggcattgaagacaGaggtgtaaaaacatgattcc	11	6	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96292528	A	A	96292528	1	1	102	0	1	0	0	0	0	0	0	0	2837	957	33	4		4	CCDC38	12	96292528	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	508	96292528	37559367	1065	100278											
GAS2L3	283431	broad.mit.edu	37	chr12	101016049	101016049	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattttatttgttcgtcatcTtaggttaaacatattgctga	6	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101016049	A	A	101016049	1	1	102	0	1	0	0	0	0	0	0	0	6310	1624	56	5		5	GAS2L3	12	101016049	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	4723521	101016049	32835846	1066	100279											
ANO4	121601	broad.mit.edu	37	chr12	101462132	101462132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcagaaactgggagaaGgtaaagggtctttgaccaaa	13	5	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101462132	T	T	101462132	1	4	102	0	1	0	0	0	0	0	0	0	699	1015	35	2		2	ANO4	12	101462132	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	446083	101462132	32389763	1067	100280											
UTP20	27340	broad.mit.edu	37	chr12	101748667	101748667	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggaattagagcgtgtggAtgaggaagagaaggaatata	15	2	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101748667	G	G	101748667	3	3	102	1	0	0	0	0	1	0	0	0	17226	333	12	5	5327	5	UTP20	12	101748667	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	286535	101748667	32103228	1068	100281											
STAB2	55576	broad.mit.edu	37	chr12	104126897	104126897	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacaacaggacttcctgttCaaccaagacaacaaggacaa	7	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104126897	A	A	104126897	3	1	102	1	0	0	0	0	1	0	0	0	15356	825	29	3	5599	3	STAB2	12	104126897	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2378230	104126897	29724998	1069	100282											
TDG	6996	broad.mit.edu	37	chr12	104376487	104376487	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcggtggtcgaggctgcactGagccatgatcgtgccactac	13	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104376487	T	T	104376487	1	4	102	0	1	0	0	0	0	0	0	0	15847	1305	45	3		3	TDG	12	104376487	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	249590	104376487	29475408	1070	100283											
APPL2	55198	broad.mit.edu	37	chr12	105601047	105601047	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtgacaattctgtaaaagCgtgtgcttcaaaatgtgtgt	10	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105601047	T	T	105601047	1	4	102	0	1	0	0	0	0	0	0	0	820	783	27	4		4	APPL2	12	105601047	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1224560	105601047	28250848	1071	100284											
RFX4	5992	broad.mit.edu	37	chr12	107080568	107080568	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccttggccttgggcaacaCtccctactcaggaaacctca	7	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107080568	G	G	107080568	1	3	102	0	1	0	0	0	0	0	0	0	13373	580	20	4		4	RFX4	12	107080568	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1479521	107080568	26771327	1072	100285											
SSH1	54434	broad.mit.edu	37	chr12	109192721	109192721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggcctggctggcttggCcacatggctgctccagctcc	13	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109192721	A	A	109192721	1	1	102	0	1	0	0	0	0	0	0	0	15302	754	26	3		3	SSH1	12	109192721	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2112153	109192721	24659174	1073	100286											
ACACB	32	broad.mit.edu	37	chr12	109605836	109605836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaggaccttaaggccaacGcaggtacctgggccttgacc	12	14	0	1	rs78715638		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109605836	T	T	109605836	3	4	102	1	0	0	0	0	1	0	0	0	107	1087	38	3	932	3	ACACB	12	109605836	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	413115	109605836	24246059	1074	100287											
CUX2	23316	broad.mit.edu	37	chr12	111748370	111748370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgagatcctagcccggcCcaagccctggcgcaagctca	11	17	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111748370	A	A	111748370	3	1	102	1	0	0	0	0	1	0	0	0	4098	623	22	2	1842	2	CUX2	12	111748370	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2142534	111748370	22103525	1075	100288											
ATXN2	6311	broad.mit.edu	37	chr12	111957619	111957619	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaatataataacaataCaccgtctcacacagaccttg	6	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111957619	T	T	111957619	1	4	102	0	1	0	0	0	0	0	0	0	1215	493	17	4		4	ATXN2	12	111957619	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	209249	111957619	21894276	1076	100289											
C12orf51	283450	broad.mit.edu	37	chr12	112720875	112720875	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgtagctgaacagagctAtacaaggaaacagatctggg	12	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112720875	T	T	112720875	1	4	102	0	1	0	0	0	0	0	0	0	1709	464	16	5		5	C12orf51	12	112720875	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	763256	112720875	21131020	1077	100290											
DTX1	1840	broad.mit.edu	37	chr12	113533229	113533229	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccggaaggtgggtgccCagccgtgagggcatgggaga	20	8	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113533229	T	T	113533229	1	4	102	0	1	0	0	0	0	0	0	0	4833	609	21	4		4	DTX1	12	113533229	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	812354	113533229	20318666	1078	100291											
NOS1	4842	broad.mit.edu	37	chr12	117669992	117669992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggcttgagtccaagtcGggggttcaggtctgctcctg	17	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117669992	T	T	117669992	1	4	102	0	1	0	0	0	0	0	0	0	10636	1131	39	1		1	NOS1	12	117669992	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4136763	117669992	16181903	1079	100292											
NOS1	4842	broad.mit.edu	37	chr12	117701684	117701684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccccacccgcccactgcaCgaaacttactctgctagctt	5	19	1	0	rs147367060	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117701684	A	A	117701684	1	1	102	0	1	0	0	0	0	0	0	0	10636	551	19	3		3	NOS1	12	117701684	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	31692	117701684	16150211	1080	100293											
CIT	11113	broad.mit.edu	37	chr12	120159163	120159163	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttctttctgtcttcagtAgatcagcccgatctagagct	7	12	6	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120159163	G	G	120159163	3	3	102	1	0	0	0	0	1	0	0	0	3469	420	15	5	2606	5	CIT	12	120159163	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	2457479	120159163	13692732	1081	100294											
RNF10	9921	broad.mit.edu	37	chr12	121001251	121001251	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccctctggtagaagaggaGgaagcagtgtctgaaccaga	13	9	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121001251	A	A	121001251	2	1	102	1	0	0	0	0	0	0	0	1	13533	991	35	4		4	RNF10	12	121001251	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	842088	121001251	12850644	1082	100295											
HPD	3242	broad.mit.edu	37	chr12	122284813	122284813	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcgatgtgctggaccccAgcgcccccgttatagtccac	11	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122284813	T	T	122284813	2	4	102	1	0	0	0	0	0	0	0	1	7399	175	7	5		5	HPD	12	122284813	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	1283562	122284813	11567082	1083	100296											
WDR66	144406	broad.mit.edu	37	chr12	122399784	122399784	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccagaacagcactgttggCtgataattataaaggctgtc	9	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122399784	G	G	122399784	1	3	102	0	1	0	0	0	0	0	0	0	17444	812	28	4		4	WDR66	12	122399784	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	114971	122399784	11452111	1084	100297											
SBNO1	55206	broad.mit.edu	37	chr12	123780522	123780522	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagctgtttctgttggaccGcaagctgttgagactggtct	12	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123780522	A	A	123780522	3	1	102	1	0	0	0	0	1	0	0	0	13974	1087	38	4	70	4	SBNO1	12	123780522	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1380738	123780522	10071373	1085	100298											
DNAH10	196385	broad.mit.edu	37	chr12	124268652	124268652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgcagccagtgttcacCgagttattcaagttccacac	7	12	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124268652	A	A	124268652	2	1	102	1	0	0	0	0	0	0	0	1	4638	639	23	1		1	DNAH10	12	124268652	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	488130	124268652	9583243	1086	100299											
NCOR2	9612	broad.mit.edu	37	chr12	124824595	124824595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacagcggtgatgatacCcttcatgcctgtgttgtgaa	10	11	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124824595	A	A	124824595	3	1	102	1	0	0	0	0	1	0	0	0	10331	623	22	2	1944	2	NCOR2	12	124824595	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	555943	124824595	9027300	1087	100300											
NCOR2	9612	broad.mit.edu	37	chr12	124841197	124841197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctacttaccaggtggagCgtaggagaaggctgaggggt	18	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124841197	A	A	124841197	3	1	102	1	0	0	0	0	1	0	0	0	10331	768	27	3	4412	3	NCOR2	12	124841197	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	16602	124841197	9010698	1088	100301											
TMEM132B	114795	broad.mit.edu	37	chr12	125899959	125899959	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcccccacatctcccagagGaagggggcgatgttacagat	11	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125899959	T	T	125899959	1	4	102	0	1	0	0	0	0	0	0	0	16169	1189	41	3		3	TMEM132B	12	125899959	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1058762	125899959	7951936	1089	100302											
TMEM132D	121256	broad.mit.edu	37	chr12	130184920	130184920	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaggtagactttgtcccGcaggatgtgggcttttagtt	13	8	1	1	rs138159153	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130184920	T	T	130184920	2	4	102	1	0	0	0	0	0	0	0	1	16170	1086	38	3		3	TMEM132D	12	130184920	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	4284961	130184920	3666975	1090	100303											
RIMBP2	23504	broad.mit.edu	37	chr12	130897400	130897400	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaatacaatagtcccactGacggtaagtgagtgtagtcg	11	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130897400	A	A	130897400	1	1	102	0	1	0	0	0	0	0	0	0	13472	1305	45	4		4	RIMBP2	12	130897400	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	712480	130897400	2954495	1091	100304											
MMP17	4326	broad.mit.edu	37	chr12	132329827	132329827	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcagcccggccctccCctctgtgcccccaggcaagt	9	20	2	0	rs145104094	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132329827	T	T	132329827	1	4	102	0	1	0	0	0	0	0	0	0	9749	638	22	4		4	MMP17	12	132329827	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1432427	132329827	1522068	1092	100305											
ATP12A	479	broad.mit.edu	37	chr13	25266922	25266922	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgttctttctctgtcttcCagaccaagtctttgaccaaa	5	12	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25266922	A	A	25266922	1	1	102	0	1	0	0	0	0	0	0	0	1126	609	21	2		2	ATP12A	13	25266922	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08		25266922	89902956	1093	100306											
ATP12A	479	broad.mit.edu	37	chr13	25283721	25283721	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgtggttttcctgtggGgcctgggttggggagggagg	21	4	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25283721	C	C	25283721	1	2	102	0	1	0	0	0	0	0	0	0	1126	1247	43	4		4	ATP12A	13	25283721	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	16799	25283721	89886157	1094	100307											
SHISA2	387914	broad.mit.edu	37	chr13	26621089	26621089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctggggctcggctctgCtggggatcctgcttaggccg	15	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26621089	A	A	26621089	3	1	102	1	0	0	0	0	1	0	0	0	14393	796	28	3	441	3	SHISA2	13	26621089	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1337368	26621089	88548789	1095	100308											
FLT1	2321	broad.mit.edu	37	chr13	28877397	28877397	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctcagcgtggtcgtaGgtgaacctgcgcttgccttc	12	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28877397	T	T	28877397	2	4	102	1	0	0	0	0	0	0	0	1	5999	987	35	2		2	FLT1	13	28877397	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	2256308	28877397	86292481	1096	100309											
FRY	10129	broad.mit.edu	37	chr13	32783010	32783010	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtaagccagcgattccccAcaacacaccccaacgggcgc	9	17	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32783010	T	T	32783010	3	4	102	1	0	0	0	0	1	0	0	0	6123	159	6	5	4165	5	FRY	13	32783010	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3905613	32783010	82386868	1097	100310											
BRCA2	675	broad.mit.edu	37	chr13	32937491	32937491	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatacccaaaaagtggccAttattgaacttacagatggg	9	8	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32937491	G	G	32937491	3	3	102	1	0	0	0	0	1	0	0	0	1508	217	8	5	8218	5	BRCA2	13	32937491	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	154481	32937491	82232387	1098	100311											
BRCA2	675	broad.mit.edu	37	chr13	32944776	32944776	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtttgagatggagtttcGgtctcttgcccaggctggag	14	7	1	1	rs142947698	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32944776	T	T	32944776	1	4	102	0	1	0	0	0	0	0	0	0	1508	1131	39	1		1	BRCA2	13	32944776	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	7285	32944776	82225102	1099	100312											
KL	9365	broad.mit.edu	37	chr13	33591005	33591005	+	Frame_Shift_Del	DEL	G	-	-													cggaggcgctgcgcgagctcGgggtcactcactaccgcttc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33591005	-	-	33591005	7	5	102	1	0	1	0	1	0	0	0	0	8402	1116	39	0	429	0	KL	13	33591005	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	646229	33591005	81578873	1100	100313											
NBEA	26960	broad.mit.edu	37	chr13	35615017	35615017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttattatttcattctactGtcatcgataacctcccatgt	4	10	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35615017	T	T	35615017	1	4	102	0	1	0	0	0	0	0	0	0	10281	1392	48	3		3	NBEA	13	35615017	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2024012	35615017	79554861	1101	100314											
STOML3	161003	broad.mit.edu	37	chr13	39546837	39546837	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggcgatacatgtttctcAgatgatcctcaatatgcaca	9	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39546837	T	T	39546837	1	4	102	0	1	0	0	0	0	0	0	0	15433	203	7	5		5	STOML3	13	39546837	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	3931820	39546837	75623041	1102	100315											
WBP4	11193	broad.mit.edu	37	chr13	41636824	41636824	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaattctgtgattactGcaagtgctggatagcagaca	10	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41636824	A	A	41636824	3	1	102	1	0	0	0	0	1	0	0	0	17388	1319	46	4	53	4	WBP4	13	41636824	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2089987	41636824	73533054	1103	100316											
ZC3H13	23091	broad.mit.edu	37	chr13	46550122	46550122	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttaattttaacttaatatCcaagtaacaatcgcccctag	3	9	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46550122	T	T	46550122	1	4	102	0	1	0	0	0	0	0	0	0	17691	870	30	4		4	ZC3H13	13	46550122	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4913298	46550122	68619756	1104	100317											
ZC3H13	23091	broad.mit.edu	37	chr13	46559724	46559724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctcccttgagtcccgCatgtctctggagtctcttag	8	14	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46559724	A	A	46559724	3	1	102	1	0	0	0	0	1	0	0	0	17691	710	25	3	3298	3	ZC3H13	13	46559724	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	9602	46559724	68610154	1105	100318											
LCP1	3936	broad.mit.edu	37	chr13	46704866	46704866	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaaatgtttgtataaaGgcatgagcattagactttac	8	4	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46704866	A	A	46704866	1	1	102	0	1	0	0	0	0	0	0	0	8763	1015	35	4		4	LCP1	13	46704866	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	145142	46704866	68465012	1106	100319											
EBPL	84650	broad.mit.edu	37	chr13	50244093	50244093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccttctccatggctcaCatcctggccacagcctggaa	7	18	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50244093	A	A	50244093	1	1	102	0	1	0	0	0	0	0	0	0	4927	493	17	3		3	EBPL	13	50244093	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3539227	50244093	64925785	1107	100320											
NEK5	341676	broad.mit.edu	37	chr13	52676018	52676018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttgcattactctctgtGtgagacatgtgtaataaata	7	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52676018	T	T	52676018	1	4	102	0	1	0	0	0	0	0	0	0	10422	1392	48	3		3	NEK5	13	52676018	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2431925	52676018	62493860	1108	100321											
PCDH8	5100	broad.mit.edu	37	chr13	53420300	53420300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcagcgtgcagctccCggccagcacgatgatgacga	13	14	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53420300	A	A	53420300	3	1	102	1	0	0	0	0	1	0	0	0	11611	652	23	1	952	1	PCDH8	13	53420300	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	744282	53420300	61749578	1109	100322											
PCDH8	5100	broad.mit.edu	37	chr13	53420511	53420511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggatatgaccaggagcgcCctgaacacgcgaccgggtgg	15	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53420511	A	A	53420511	3	1	102	1	0	0	0	0	1	0	0	0	11611	622	22	2	1163	2	PCDH8	13	53420511	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	211	53420511	61749367	1110	100323											
DIAPH3	81624	broad.mit.edu	37	chr13	60582640	60582640	+	Intron	DEL	C	-	-													accgttaaaagtaatatatgCcatttaaaaacagattttat							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60582640	-	-	60582640	6	5	102	0	1	1	0	1	0	0	0	0	4560	754	26	0		0	DIAPH3	13	60582640	Intron	DEL	C	TCGA-38-4631-01A-01D-1753-08	7162129	60582640	54587238	1111	100324											
CLN5	1203	broad.mit.edu	37	chr13	77564706	77564706	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgctctccaggcagccaCggaggctctggttgttgagg	14	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77564706	A	A	77564706	1	1	102	0	1	0	0	0	0	0	0	0	3576	551	19	3		3	CLN5	13	77564706	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	16982066	77564706	37605172	1112	100325											
EDNRB	1910	broad.mit.edu	37	chr13	78477257	78477257	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctaaatatttataaggcaaGagcagaaaggaaaataaaaa	8	3	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78477257	T	T	78477257	1	4	102	0	1	0	0	0	0	0	0	0	4960	957	33	3		3	EDNRB	13	78477257	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	912551	78477257	36692621	1113	100326											
SLITRK1	114798	broad.mit.edu	37	chr13	84455480	84455480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaactgggaagtcggggCagtgaaacgctgcagacttg	15	7	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84455480	A	A	84455480	3	1	102	1	0	0	0	0	1	0	0	0	14856	710	25	3	1931	3	SLITRK1	13	84455480	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	5978223	84455480	30714398	1114	100327											
GPC5	2262	broad.mit.edu	37	chr13	93518679	93518679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtggtgatgttacttcCcgggatttggtaactgaact	12	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93518679	A	A	93518679	3	1	102	1	0	0	0	0	1	0	0	0	6666	623	22	2	1736	2	GPC5	13	93518679	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	9063199	93518679	21651199	1115	100328											
DCT	1638	broad.mit.edu	37	chr13	95095718	95095718	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgatggcatagctgtagccAagttggtctgaggttaaaaa	12	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95095718	G	G	95095718	2	3	102	1	0	0	0	0	0	0	0	1	4337	117	5	5		5	DCT	13	95095718	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	1577039	95095718	20074160	1116	100329											
NALCN	259232	broad.mit.edu	37	chr13	101890223	101890223	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatatccagtaaatcccaaAcaccatatcttcagaagtgc	4	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101890223	T	T	101890223	4	4	102	1	0	0	0	0	0	1	0	0	10242	41	2	5	4031	5	NALCN	13	101890223	Nonsense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	6794505	101890223	13279655	1117	100330											
KDELC1	79070	broad.mit.edu	37	chr13	103446052	103446052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacagcagggaaatgtgCcagatctctctgaatctgag	10	10	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103446052	A	A	103446052	3	1	102	1	0	0	0	0	1	0	0	0	8187	739	26	3	1047	3	KDELC1	13	103446052	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1555829	103446052	11723826	1118	100331											
MYO16	23026	broad.mit.edu	37	chr13	109379843	109379843	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgattgacagaggagtcaAcgtcaaccaccaggatgaag	11	9	3	4	rs141525847	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109379843	T	T	109379843	3	4	102	1	0	0	0	0	1	0	0	0	10158	43	2	5	363	5	MYO16	13	109379843	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	5933791	109379843	5790035	1119	100332											
ANKRD10	55608	broad.mit.edu	37	chr13	111553080	111553080	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtttttacagattcagAatcttctgtgtgatttaaaa	7	4	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111553080	T	T	111553080	1	4	102	0	1	0	0	0	0	0	0	0	638	261	9	5		5	ANKRD10	13	111553080	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2173237	111553080	3616798	1120	100333											
UPF3A	65110	broad.mit.edu	37	chr13	115067172	115067172	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcagccaaccggcggtttActgcagttgctgatcatttg	13	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115067172	T	T	115067172	1	4	102	0	1	0	0	0	0	0	0	0	17131	406	14	5		5	UPF3A	13	115067172	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	3514092	115067172	102706	1121	100334											
OR4K13	390433	broad.mit.edu	37	chr14	20502863	20502863	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctgaagattttgagattTggaaagtcccaacaaaataa	7	5	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20502863	A	A	20502863	4	1	102	1	0	0	0	0	0	1	0	0	11162	1821	63	5	861	5	OR4K13	14	20502863	Nonsense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08		20502863	86846677	1122	100335											
TEP1	7011	broad.mit.edu	37	chr14	20876106	20876106	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggttgaaaggtctagtcCcttagagaaatgctgagccc	12	9	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20876106	A	A	20876106	4	1	102	1	0	0	0	0	0	1	0	0	15881	632	22	2	7606	2	TEP1	14	20876106	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	373243	20876106	86473434	1123	100336											
PRMT5	10419	broad.mit.edu	37	chr14	23396683	23396691	+	Intron	DEL	GCACAATCT	-	-													taggcacaagaaggtacttaGcacaatctgactactatgat							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23396691	-	-	23396683	6	5	102	0	1	1	0	1	0	0	0	0	12645	986	34	0		0	PRMT5	14	23396683	Intron	DEL	GCACAATCT	TCGA-38-4631-01A-01D-1753-08	2520577	23396683	83952857	1124	100337											
ACIN1	22985	broad.mit.edu	37	chr14	23530581	23530581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgggaccttgatcgggaaCggggcccttctcgaactttg	13	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23530581	A	A	23530581	3	1	102	1	0	0	0	0	1	0	0	0	142	536	19	3	513	3	ACIN1	14	23530581	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	133898	23530581	83818959	1125	100338											
ACIN1	22985	broad.mit.edu	37	chr14	23531687	23531687	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttccaccaaggttcctgTgcgccccaacaactccttta	5	17	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23531687	A	A	23531687	3	1	102	1	0	0	0	0	1	0	0	0	142	1696	59	5	942	5	ACIN1	14	23531687	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1106	23531687	83817853	1126	100339											
MYH6	4624	broad.mit.edu	37	chr14	23869718	23869718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtgcactgtgccgagcCcagcagggtatggctgtccc	14	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23869718	A	A	23869718	1	1	102	0	1	0	0	0	0	0	0	0	10132	638	22	2		2	MYH6	14	23869718	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	338031	23869718	83479822	1127	100340											
MYH6	4624	broad.mit.edu	37	chr14	23871845	23871845	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agagacaaagaggggggttgGagcggtggccccaggagctc	19	8	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23871845	C	C	23871845	1	2	102	0	1	0	0	0	0	0	0	0	10132	1189	41	4		4	MYH6	14	23871845	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2127	23871845	83477695	1128	100341											
MYH6	4624	broad.mit.edu	37	chr14	23874802	23874802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaggcctccacgcagcaCaggaagcctctgcagtgtgc	11	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23874802	A	A	23874802	1	1	102	0	1	0	0	0	0	0	0	0	10132	493	17	3		3	MYH6	14	23874802	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2957	23874802	83474738	1129	100342											
MYH7	4625	broad.mit.edu	37	chr14	23885189	23885189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcgccaggccacgtggaGgccagtcccctctgggtgag	15	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23885189	T	T	23885189	1	4	102	0	1	0	0	0	0	0	0	0	10133	1015	35	2		2	MYH7	14	23885189	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	10387	23885189	83464351	1130	100343											
MYH7	4625	broad.mit.edu	37	chr14	23893161	23893161	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctccactttggccagtgtCagctccagatcatcgatgtc	8	13	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23893161	G	G	23893161	2	3	102	1	0	0	0	0	0	0	0	1	10133	813	29	4		4	MYH7	14	23893161	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	7972	23893161	83456379	1131	100344											
LRRC16B	90668	broad.mit.edu	37	chr14	24538064	24538064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggccgccagcctcccCaggagccaggggtcagggag	17	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24538064	A	A	24538064	3	1	102	1	0	0	0	0	1	0	0	0	9059	595	21	2	4021	2	LRRC16B	14	24538064	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	644903	24538064	82811476	1132	100345											
IPO4	79711	broad.mit.edu	37	chr14	24655132	24655132	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaggagtccagctttgcgCtggtatgggctctcgctccg	13	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24655132	T	T	24655132	2	4	102	1	0	0	0	0	0	0	0	1	7865	796	28	4		4	IPO4	14	24655132	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	117068	24655132	82694408	1133	100346											
NOVA1	4857	broad.mit.edu	37	chr14	26918152	26918152	+	Frame_Shift_Del	DEL	G	-	-													atcagacctgctgtgctgttGggaactataatctttacctg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26918152	-	-	26918152	7	5	102	1	0	1	0	1	0	0	0	0	10649	1335	47	0	990	0	NOVA1	14	26918152	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	2263020	26918152	80431388	1134	100347											
AP4S1	11154	broad.mit.edu	37	chr14	31542229	31542229	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctcaacccagtttcccaGaaattgagtctctttggatc	6	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31542229	C	C	31542229	1	2	102	0	1	0	0	0	0	0	0	0	756	957	33	4		4	AP4S1	14	31542229	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4624077	31542229	75807311	1135	100348											
HECTD1	25831	broad.mit.edu	37	chr14	31605941	31605941	+	Intron	SNP	T	C	C													cagaattgtaaaaaatgataTaccctaaaacaactgagatt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31605941	C	C	31605941	1	2	102	0	1	0	0	0	0	0	0	0	7106	1421	49	5		5	HECTD1	14	31605941	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	63712	31605941	75743599	1136	100349	433	2									
HECTD1	25831	broad.mit.edu	37	chr14	31605945	31605945	+	Intron	SNP	C	T	T													attgtaaaaaatgatataccCtaaaacaactgagatttgga							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31605945	T	T	31605945	1	4	102	0	1	0	0	0	0	0	0	0	7106	696	24	4		4	HECTD1	14	31605945	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4	31605945	75743595	1137	100350	433	2									
HEATR5A	25938	broad.mit.edu	37	chr14	31778439	31778439	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattaacttccaatatatttTctcttttttctgttacaaga	3	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31778439	A	A	31778439	1	1	102	0	1	0	0	0	0	0	0	0	7098	1798	62	5		5	HEATR5A	14	31778439	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	172494	31778439	75571101	1138	100351											
KIAA0391	9692	broad.mit.edu	37	chr14	35628066	35628066	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagacttggatattctggaGaatgcaaatctatgaggaat	10	4	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35628066	A	A	35628066	1	1	102	0	1	0	0	0	0	0	0	0	8242	957	33	4		4	KIAA0391	14	35628066	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3849627	35628066	71721474	1139	100352											
FKBP3	2287	broad.mit.edu	37	chr14	45603705	45603705	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccagcccgccgcagttcGgcatcgccccgccccctagg	12	20	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45603705	T	T	45603705	1	4	102	0	1	0	0	0	0	0	0	0	5966	1131	39	1		1	FKBP3	14	45603705	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	9975639	45603705	61745835	1140	100353											
RPL10L	140801	broad.mit.edu	37	chr14	47120870	47120870	+	Frame_Shift_Del	DEL	G	-	-													cttggcatcaggaacccctcGgcagaaacgagattttgggt					rs141953926		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47120870	-	-	47120870	7	5	102	1	0	1	0	1	0	0	0	0	13667	1124	39	0	578	0	RPL10L	14	47120870	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	1517165	47120870	60228670	1141	100354											
MDGA2	161357	broad.mit.edu	37	chr14	47566251	47566251	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggctctcctcctgttgtaAcacatactaatgttatggcc	7	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47566251	T	T	47566251	3	4	102	1	0	0	0	0	1	0	0	0	9500	43	2	5	2124	5	MDGA2	14	47566251	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	445381	47566251	59783289	1142	100355											
SOS2	6655	broad.mit.edu	37	chr14	50626482	50626482	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaaatgcatgcttgtgctCacaagtatcttctttatcac	5	10	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50626482	T	T	50626482	3	4	102	1	0	0	0	0	1	0	0	0	15051	835	29	4	2535	4	SOS2	14	50626482	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3060231	50626482	56723058	1143	100356											
NIN	51199	broad.mit.edu	37	chr14	51226456	51226456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctcgtgatccgcccacCtcggcctcccagagtgctgg	11	17	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51226456	A	A	51226456	1	1	102	0	1	0	0	0	0	0	0	0	10512	696	24	2		2	NIN	14	51226456	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	599974	51226456	56123084	1144	100357											
FRMD6	122786	broad.mit.edu	37	chr14	52187182	52187182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattggttctatagaactgGtgtctggagagcaactttag	12	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52187182	T	T	52187182	1	4	102	0	1	0	0	0	0	0	0	0	6114	1276	44	3		3	FRMD6	14	52187182	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	960726	52187182	55162358	1145	100358											
GNG2	54331	broad.mit.edu	37	chr14	52433353	52433353	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctcctgacccctgttcCggcttcagaaaacccgttta	6	18	1	2	rs139067662	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52433353	T	T	52433353	3	4	102	1	0	0	0	0	1	0	0	0	6591	652	23	4	170	4	GNG2	14	52433353	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	246171	52433353	54916187	1146	100359											
PELI2	57161	broad.mit.edu	37	chr14	56645093	56645093	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggagatagaggacggaggAaaagtagatttgccctctac	13	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56645093	G	G	56645093	3	3	102	1	0	0	0	0	1	0	0	0	11816	247	9	5	124	5	PELI2	14	56645093	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	4211740	56645093	50704447	1147	100360											
ZBTB25	7597	broad.mit.edu	37	chr14	64953726	64953726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagtgttcttgtgacaagCgagaacttttcagggagaca	11	7	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64953726	A	A	64953726	3	1	102	1	0	0	0	0	1	0	0	0	17658	768	27	3	88	3	ZBTB25	14	64953726	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	8308633	64953726	42395814	1148	100361											
SLC8A3	6547	broad.mit.edu	37	chr14	70633330	70633330	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaagatggggtcagggagGggcagaatacaggaaggtta	17	4	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70633330	A	A	70633330	1	1	102	0	1	0	0	0	0	0	0	0	14822	1247	43	4		4	SLC8A3	14	70633330	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5679604	70633330	36716210	1149	100362											
PAPLN	89932	broad.mit.edu	37	chr14	73727284	73727284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatggcctgccctgcacacGgggacacgtcctctcccccc	9	19	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73727284	A	A	73727284	1	1	102	0	1	0	0	0	0	0	0	0	11522	1131	39	4		4	PAPLN	14	73727284	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3093954	73727284	33622256	1150	100363											
NUMB	8650	broad.mit.edu	37	chr14	73789827	73789827	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatcaacactggcaaccatCaaatacatacagctttcaat	4	11	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73789827	A	A	73789827	1	1	102	0	1	0	0	0	0	0	0	0	10846	841	29	3		3	NUMB	14	73789827	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	62543	73789827	33559713	1151	100364											
KIAA0317	9870	broad.mit.edu	37	chr14	75139406	75139406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgatcgcacctctgcaccCcagcctgggcaatagagtga	10	14	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75139406	A	A	75139406	1	1	102	0	1	0	0	0	0	0	0	0	8237	638	22	2		2	KIAA0317	14	75139406	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1349579	75139406	32210134	1152	100365											
ADCK1	57143	broad.mit.edu	37	chr14	78397954	78397954	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgctgctcatcttgaagAccaacgacctgctgcgtggc	11	12	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78397954	G	G	78397954	3	3	102	1	0	0	0	0	1	0	0	0	288	275	10	5	1334	5	ADCK1	14	78397954	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3258548	78397954	28951586	1153	100366											
SEL1L	6400	broad.mit.edu	37	chr14	81968961	81968961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacaaaattggtatttatcTtccagtctgactttttaaaa	4	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81968961	A	A	81968961	1	1	102	0	1	0	0	0	0	0	0	0	14123	1624	56	5		5	SEL1L	14	81968961	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3571007	81968961	25380579	1154	100367											
TTC7B	145567	broad.mit.edu	37	chr14	91007748	91007748	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatggtgaagggcacggcGgggctgctggcctccagctc	17	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91007748	T	T	91007748	2	4	102	1	0	0	0	0	0	0	0	1	16839	1103	39	1		1	TTC7B	14	91007748	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	9038787	91007748	16341792	1155	100368											
LGMN	5641	broad.mit.edu	37	chr14	93172726	93172726	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcccactgtttctcagccTggatggaaccttctataagg	10	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93172726	A	A	93172726	1	1	102	0	1	0	0	0	0	0	0	0	8827	1595	55	5		5	LGMN	14	93172726	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	2164978	93172726	14176814	1156	100369											
ASB2	51676	broad.mit.edu	37	chr14	94413654	94413654	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctactcccagtgtgggcCtcgggagagctgcctgggtg	15	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94413654	T	T	94413654	1	4	102	0	1	0	0	0	0	0	0	0	1027	696	24	4		4	ASB2	14	94413654	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1240928	94413654	12935886	1157	100370											
PPP4R4	57718	broad.mit.edu	37	chr14	94732255	94732255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagcccttcaatttttaacAtaatttttatctttattcac	1	8	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94732255	T	T	94732255	1	4	102	0	1	0	0	0	0	0	0	0	12506	232	8	5		5	PPP4R4	14	94732255	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	318601	94732255	12617285	1158	100371											
SERPINA9	327657	broad.mit.edu	37	chr14	94933527	94933527	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcatcttgcccttgctaGggaggacaaagaaggccacg	12	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94933527	A	A	94933527	3	1	102	1	0	0	0	0	1	0	0	0	14208	1000	35	4	444	4	SERPINA9	14	94933527	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	201272	94933527	12416013	1159	100372											
AK7	122481	broad.mit.edu	37	chr14	96912750	96912750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagataacttatcaaagcaCcaaaccccacgcccagccat	6	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96912750	A	A	96912750	1	1	102	0	1	0	0	0	0	0	0	0	444	522	18	3		3	AK7	14	96912750	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1979223	96912750	10436790	1160	100373											
DLK1	8788	broad.mit.edu	37	chr14	101201093	101201093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacctgggtgtccaacctgCgctacaaccacatgctgcgg	11	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101201093	A	A	101201093	3	1	102	1	0	0	0	0	1	0	0	0	4604	768	27	3	1030	3	DLK1	14	101201093	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4288343	101201093	6148447	1161	100374											
DYNC1H1	1778	broad.mit.edu	37	chr14	102505914	102505914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcagccgctccctggcGggggggaagcagggtgctgc	18	13	1	0	rs17541512		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102505914	T	T	102505914	1	4	102	0	1	0	0	0	0	0	0	0	4881	1131	39	1		1	DYNC1H1	14	102505914	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1304821	102505914	4843626	1162	100375											
TDRD9	122402	broad.mit.edu	37	chr14	104471794	104471794	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgtagagctgtgttctaCtgtggctccctcagtctgtg	11	10	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104471794	T	T	104471794	1	4	102	0	1	0	0	0	0	0	0	0	15858	580	20	4		4	TDRD9	14	104471794	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1965880	104471794	2877746	1163	100376											
C15orf2	23742	broad.mit.edu	37	chr15	24923730	24923730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacacttggggccactgatGggcagcagaagtctgacagt	13	11	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24923730	T	T	24923730	3	4	102	1	0	0	0	0	1	0	0	0	1797	1348	47	2	2718	2	C15orf2	15	24923730	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08		24923730	77607662	1164	100377											
GABRB3	2562	broad.mit.edu	37	chr15	26812800	26812800	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgacagaatcgttatcagtaTagagggcatataagtctgaa	10	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26812800	C	C	26812800	3	2	102	1	0	0	0	0	1	0	0	0	6228	1406	49	5	670	5	GABRB3	15	26812800	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1889070	26812800	75718592	1165	100378											
OCA2	4948	broad.mit.edu	37	chr15	28000591	28000591	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacacatcccaacagtgcaGgacacaaccatcattgggaa	7	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28000591	T	T	28000591	2	4	102	1	0	0	0	0	0	0	0	1	10910	987	35	2		2	OCA2	15	28000591	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1187791	28000591	74530801	1166	100379											
APBA2	321	broad.mit.edu	37	chr15	29409379	29409379	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggacaccgggcagggcCgcccgggcccagaggagctg	18	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29409379	T	T	29409379	1	4	102	0	1	0	0	0	0	0	0	0	759	667	23	4		4	APBA2	15	29409379	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	1408788	29409379	73122013	1167	100380											
GREM1	26585	broad.mit.edu	37	chr15	33023301	33023301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catccggaaggaggaaggttCctttcagtcctgctccttct	10	12	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33023301	A	A	33023301	3	1	102	1	0	0	0	0	1	0	0	0	6827	855	30	3	412	3	GREM1	15	33023301	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3613922	33023301	69508091	1168	100381											
RYR3	6263	broad.mit.edu	37	chr15	33876546	33876546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttccaagttctcacgcCcatcattatatcctttaacc	3	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33876546	A	A	33876546	1	1	102	0	1	0	0	0	0	0	0	0	13881	638	22	2		2	RYR3	15	33876546	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	853245	33876546	68654846	1169	100382											
RYR3	6263	broad.mit.edu	37	chr15	33999197	33999197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggataccctgatgtcggctgGaaccccattgaaggggaacg	14	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33999197	T	T	33999197	3	4	102	1	0	0	0	0	1	0	0	0	13881	1183	41	3	6731	3	RYR3	15	33999197	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	122651	33999197	68532195	1170	100383											
RYR3	6263	broad.mit.edu	37	chr15	34015043	34015043	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccatgcagggtgccattaaGatctctgagaacccagcgct	11	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34015043	C	C	34015043	3	2	102	1	0	0	0	0	1	0	0	0	13881	933	33	4	6921	4	RYR3	15	34015043	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	15846	34015043	68516349	1171	100384											
SPRED1	161742	broad.mit.edu	37	chr15	38591588	38591588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttagtaatagttatgcacGagtgcgagctgtggtgatga	13	4	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38591588	T	T	38591588	3	4	102	1	0	0	0	0	1	0	0	0	15210	1058	37	3	53	3	SPRED1	15	38591588	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4576545	38591588	63939804	1172	100385											
PLCB2	5330	broad.mit.edu	37	chr15	40586455	40586455	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcccggccacttgtgtgccCcagggccttgccgtaatgga	12	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40586455	G	G	40586455	1	3	102	0	1	0	0	0	0	0	0	0	12123	638	22	4		4	PLCB2	15	40586455	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1994867	40586455	61944937	1173	100386											
C15orf52	388115	broad.mit.edu	37	chr15	40630864	40630864	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttacaatccgtttgccctGgggaggatgaagatgggcag	14	8	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40630864	A	A	40630864	1	1	102	0	1	0	0	0	0	0	0	0	1813	1363	47	4		4	C15orf52	15	40630864	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	44409	40630864	61900528	1174	100387											
TMEM62	80021	broad.mit.edu	37	chr15	43430790	43430790	+	Frame_Shift_Del	DEL	G	-	-													agatgcattcaatattccaaGtctggacagcatcaagaatt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43430790	-	-	43430790	7	5	102	1	0	1	0	1	0	0	0	0	16312	1029	36	0	463	0	TMEM62	15	43430790	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	2799926	43430790	59100602	1175	100388											
TGM5	9333	broad.mit.edu	37	chr15	43545161	43545161	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagccatatagagaagtgTtagaaacatccatttcctca	7	8	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43545161	A	A	43545161	1	1	102	0	1	0	0	0	0	0	0	0	15956	1740	60	5		5	TGM5	15	43545161	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	114371	43545161	58986231	1176	100389											
ZSCAN29	146050	broad.mit.edu	37	chr15	43658617	43658617	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttccgatagctcttctggaGacctttgaacttggtccgac	9	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43658617	C	C	43658617	3	2	102	1	0	0	0	0	1	0	0	0	18365	942	33	4	1657	4	ZSCAN29	15	43658617	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	113456	43658617	58872775	1177	100390											
SEMA6D	80031	broad.mit.edu	37	chr15	48052531	48052531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatccggtttttagaggacGcccttcaggcaatgaatcgc	10	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48052531	A	A	48052531	3	1	102	1	0	0	0	0	1	0	0	0	14155	1087	38	4	146	4	SEMA6D	15	48052531	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4393914	48052531	54478861	1178	100391											
SEMA6D	80031	broad.mit.edu	37	chr15	48063041	48063041	+	Missense_Mutation	SNP	C	G	G													ctaaatccatggtaatggacCatcgagggcaacctccagag							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48063041	G	G	48063041	3	3	102	1	0	0	0	0	1	0	0	0	14155	594	21	4	2394	4	SEMA6D	15	48063041	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	10510	48063041	54468351	1179	100392	434	2									
SEMA6D	80031	broad.mit.edu	37	chr15	48063050	48063050	+	Missense_Mutation	SNP	C	A	A													tggtaatggaccatcgagggCaacctccagagttggctgct							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48063050	A	A	48063050	3	1	102	1	0	0	0	0	1	0	0	0	14155	711	25	3	2403	3	SEMA6D	15	48063050	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	9	48063050	54468342	1180	100393	434	2									
SLC12A1	6557	broad.mit.edu	37	chr15	48524893	48524893	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagttgttaaataaatctGatttggtttccttttacctt	5	5	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48524893	T	T	48524893	1	4	102	0	1	0	0	0	0	0	0	0	14495	1305	45	3		3	SLC12A1	15	48524893	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	461843	48524893	54006499	1181	100394											
CEP152	22995	broad.mit.edu	37	chr15	49061306	49061306	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaggtcaaaagttttaCaagttttaaaaaattctaag	5	3	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49061306	G	G	49061306	1	3	102	0	1	0	0	0	0	0	0	0	3278	493	17	4		4	CEP152	15	49061306	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	536413	49061306	53470086	1182	100395											
SHC4	399694	broad.mit.edu	37	chr15	49127037	49127037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactcagcacatattggcCaggggatgttgcactctctc	9	13	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49127037	A	A	49127037	3	1	102	1	0	0	0	0	1	0	0	0	14386	594	21	2	234	2	SHC4	15	49127037	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	65731	49127037	53404355	1183	100396											
SLC27A2	11001	broad.mit.edu	37	chr15	50515330	50515330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcgagaaaagttggtgctGttggaagagtaaactaccta	12	5	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50515330	T	T	50515330	3	4	102	1	0	0	0	0	1	0	0	0	14640	1377	48	3	1159	3	SLC27A2	15	50515330	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1388293	50515330	52016062	1184	100397											
USP50	373509	broad.mit.edu	37	chr15	50838794	50838794	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctttcaacttcatttctctGagcctgttaacgctggcttt	6	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50838794	C	C	50838794	1	2	102	0	1	0	0	0	0	0	0	0	17209	1305	45	4		4	USP50	15	50838794	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	323464	50838794	51692598	1185	100398											
UNC13C	440279	broad.mit.edu	37	chr15	54305103	54305103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcactaattgctctccatGgtggctaattttttcaagag	8	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54305103	T	T	54305103	3	4	102	1	0	0	0	0	1	0	0	0	17112	1348	47	2	5	2	UNC13C	15	54305103	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3466309	54305103	48226289	1186	100399											
UNC13C	440279	broad.mit.edu	37	chr15	54528648	54528648	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatggtaagtgctttgctAtttatttaattaatattttg	7	4	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54528648	T	T	54528648	1	4	102	0	1	0	0	0	0	0	0	0	17112	464	16	5		5	UNC13C	15	54528648	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	223545	54528648	48002744	1187	100400											
NEDD4	4734	broad.mit.edu	37	chr15	56142806	56142807	+	Missense_Mutation	DNP	CC	AA	AA													tttggtgcatgccggacttcCcagcctttaggaaggaatcc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	56142807	AA	AA	56142806	3	1	102	1	0	0	0	0	1	0	0	0	10405	624	22	2	1485	2	NEDD4	15	56142806	Missense_Mutation	DNP	CC	TCGA-38-4631-01A-01D-1753-08	1614158	56142806	46388586	1188	100401											
TLN2	83660	broad.mit.edu	37	chr15	63004131	63004131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatggtgcgccaggcgcGggttctggcccaagccacat	14	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63004131	T	T	63004131	3	4	102	1	0	0	0	0	1	0	0	0	16071	1116	39	1	2563	1	TLN2	15	63004131	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	6861325	63004131	39527261	1189	100402											
IGDCC4	57722	broad.mit.edu	37	chr15	65702613	65702614	+	Nonsense_Mutation	DNP	CC	AA	AA													aaagcgagctgtcccgttctCctccaccgtctgagactccg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	65702614	AA	AA	65702613	4	1	102	1	0	0	0	0	0	1	0	0	7639	864	30	3	3358	3	IGDCC4	15	65702613	Nonsense_Mutation	DNP	CC	TCGA-38-4631-01A-01D-1753-08	2698482	65702613	36828779	1190	100403											
SMAD3	4088	broad.mit.edu	37	chr15	67457257	67457257	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatggccggttgcaggtGtcccatcggaaggggctccc	16	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67457257	T	T	67457257	2	4	102	1	0	0	0	0	0	0	0	1	14873	1364	48	3		3	SMAD3	15	67457257	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1754644	67457257	35074135	1191	100404											
ITGA11	22801	broad.mit.edu	37	chr15	68628073	68628073	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggatggtgaggctccGgttgttgtgcatggtgaaca	17	6	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68628073	T	T	68628073	2	4	102	1	0	0	0	0	0	0	0	1	7944	1115	39	1		1	ITGA11	15	68628073	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1170816	68628073	33903319	1192	100405											
TMEM202	338949	broad.mit.edu	37	chr15	72691081	72691081	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaggcacacatctacatcCgaacgctctgtggcagcctc	8	15	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72691081	T	T	72691081	4	4	102	1	0	0	0	0	0	1	0	0	16250	644	23	4	175	4	TMEM202	15	72691081	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4063008	72691081	29840311	1193	100406											
NEO1	4756	broad.mit.edu	37	chr15	73564825	73564825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacccaaggatgtgactGttgtgagtaaagaggggaaa	13	7	0	3	rs148148823	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73564825	T	T	73564825	3	4	102	1	0	0	0	0	1	0	0	0	10431	1377	48	3	2961	3	NEO1	15	73564825	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	873744	73564825	28966567	1194	100407											
PML	5371	broad.mit.edu	37	chr15	74315134	74315134	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaagaggaaaaagtcaggaGagtcctaacccaggccaacc	10	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74315134	A	A	74315134	1	1	102	0	1	0	0	0	0	0	0	0	12230	957	33	4		4	PML	15	74315134	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	750309	74315134	28216258	1195	100408											
SCAPER	49855	broad.mit.edu	37	chr15	76696787	76696787	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaccacttgaattcctatGaaatgaccctagaatgggca	8	9	0	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76696787	C	C	76696787	1	2	102	0	1	0	0	0	0	0	0	0	13990	1305	45	4		4	SCAPER	15	76696787	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2381653	76696787	25834605	1196	100409											
RASGRF1	5923	broad.mit.edu	37	chr15	79317851	79317851	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagagaccctgagcccatctCctggggtgacctttgcctct	11	14	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79317851	T	T	79317851	1	4	102	0	1	0	0	0	0	0	0	0	13180	870	30	4		4	RASGRF1	15	79317851	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2621064	79317851	23213541	1197	100410											
KIAA1199	57214	broad.mit.edu	37	chr15	81181089	81181089	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattcaaattgttccagacaGagcatggcgaatatttcaat	7	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81181089	C	C	81181089	3	2	102	1	0	0	0	0	1	0	0	0	8283	943	33	4	942	4	KIAA1199	15	81181089	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1863238	81181089	21350303	1198	100411											
IL16	3603	broad.mit.edu	37	chr15	81584983	81584983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcacccccgcatcgcaggGctcagaaggtcatgatccgc	11	16	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81584983	T	T	81584983	3	4	102	1	0	0	0	0	1	0	0	0	7703	1203	42	3	1549	3	IL16	15	81584983	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	403894	81584983	20946409	1199	100412											
CPEB1	64506	broad.mit.edu	37	chr15	83222809	83222809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccacactcttccctggGgtgaacttgtccagtaagaa	9	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83222809	T	T	83222809	1	4	102	0	1	0	0	0	0	0	0	0	3832	1247	43	2		2	CPEB1	15	83222809	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1637826	83222809	19308583	1200	100413											
AP3B2	8120	broad.mit.edu	37	chr15	83330737	83330737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcccctcacttcccacCctgtgtagaggcacagcttg	7	17	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83330737	A	A	83330737	1	1	102	0	1	0	0	0	0	0	0	0	747	638	22	2		2	AP3B2	15	83330737	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	107928	83330737	19200655	1201	100414											
AP3B2	8120	broad.mit.edu	37	chr15	83358123	83358123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaggcctcctccttcccCtcttaccgccacaatcctct	6	19	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83358123	A	A	83358123	1	1	102	0	1	0	0	0	0	0	0	0	747	696	24	2		2	AP3B2	15	83358123	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	27386	83358123	19173269	1202	100415											
FSD2	123722	broad.mit.edu	37	chr15	83447708	83447708	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagggtatatatatagtgctGagtcactgtcataaatgaag	10	4	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83447708	T	T	83447708	1	4	102	0	1	0	0	0	0	0	0	0	6131	1305	45	3		3	FSD2	15	83447708	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	89585	83447708	19083684	1203	100416											
SH3GL3	6457	broad.mit.edu	37	chr15	84237419	84237419	+	Frame_Shift_Del	DEL	C	-	-													ggagctcggggaagactccaCctttggtgagttattcagag							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84237419	-	-	84237419	7	5	102	1	0	1	0	1	0	0	0	0	14365	507	18	0	340	0	SH3GL3	15	84237419	Frame_Shift_Del	DEL	C	TCGA-38-4631-01A-01D-1753-08	789711	84237419	18293973	1204	100417											
AGBL1	123624	broad.mit.edu	37	chr15	86801251	86801251	+	Frame_Shift_Del	DEL	G	-	-													aagactctgatactgaagatGggaaagtggaagtaggtaca							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86801251	-	-	86801251	7	5	102	1	0	1	0	1	0	0	0	0	375	1348	47	0	846	0	AGBL1	15	86801251	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	2563832	86801251	15730141	1205	100418											
AGBL1	123624	broad.mit.edu	37	chr15	86807756	86807757	+	Missense_Mutation	DNP	TC	AA	AA													atagtctcaggagagattctTctgaaagtgaaatccctgac							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	86807757	AA	AA	86807756	3	1	102	1	0	0	0	0	1	0	0	0	375	1783	62	5	1250	5	AGBL1	15	86807756	Missense_Mutation	DNP	TC	TCGA-38-4631-01A-01D-1753-08	6505	86807756	15723636	1206	100419											
AGBL1	123624	broad.mit.edu	37	chr15	87531187	87531187	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatggtttattttcaccaaTctgtaccactcatttatctg	4	10	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87531187	A	A	87531187	1	1	102	0	1	0	0	0	0	0	0	0	375	1450	50	5		5	AGBL1	15	87531187	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	723431	87531187	15000205	1207	100420											
ACAN	176	broad.mit.edu	37	chr15	89398308	89398308	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctccaaggagccatcccCctcagaggaaccatcagcct	7	19	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89398308	T	T	89398308	3	4	102	1	0	0	0	0	1	0	0	0	117	623	22	4	2534	4	ACAN	15	89398308	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1867121	89398308	13133084	1208	100421											
RHCG	51458	broad.mit.edu	37	chr15	90021158	90021158	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcatcatctcagcagcGgtacccacggccacccctcc	8	18	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90021158	T	T	90021158	2	4	102	1	0	0	0	0	0	0	0	1	13435	1103	39	1		1	RHCG	15	90021158	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	622850	90021158	12510234	1209	100422											
MCTP2	55784	broad.mit.edu	37	chr15	95001411	95001411	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaagaatctatatggtacagGatattgtttcaactgttcaa	7	5	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95001411	C	C	95001411	3	2	102	1	0	0	0	0	1	0	0	0	9494	1174	41	4	2446	4	MCTP2	15	95001411	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4980253	95001411	7529981	1210	100423											
FAM169B	283777	broad.mit.edu	37	chr15	98995130	98995130	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaatgtctcacagaagtcCcgcagcatggctgttcccaa	11	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98995130	G	G	98995130	2	3	102	1	0	0	0	0	0	0	0	1	5533	610	22	4		4	FAM169B	15	98995130	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	3993719	98995130	3536262	1211	100424											
IGF1R	3480	broad.mit.edu	37	chr15	99465614	99465614	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccacgaggctgagaagctGggctgcagcgcctccaactt	12	13	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99465614	C	C	99465614	2	2	102	1	0	0	0	0	0	0	0	1	7641	1335	47	4		4	IGF1R	15	99465614	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	470484	99465614	3065778	1212	100425											
LINS1	55180	broad.mit.edu	37	chr15	101112154	101112154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcagcctccagcatgtcatCgtcttgttctatgaaaaccc	8	13	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101112154	A	A	101112154	3	1	102	1	0	0	0	0	1	0	0	0	8891	884	31	3	942	3	LINS1	15	101112154	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1646540	101112154	1419238	1213	100426											
ALDH1A3	220	broad.mit.edu	37	chr15	101434374	101434374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcacgagatgggacagtGgcagactgctggcaatcgag	15	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101434374	T	T	101434374	1	4	102	0	1	0	0	0	0	0	0	0	492	1363	47	2		2	ALDH1A3	15	101434374	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	322220	101434374	1097018	1214	100427											
TARSL2	123283	broad.mit.edu	37	chr15	102244013	102244013	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatgattaaaatcctttaaTagctagtgcaccttaagttt	5	6	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102244013	A	A	102244013	1	1	102	0	1	0	0	0	0	0	0	0	15680	1421	49	5		5	TARSL2	15	102244013	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	809639	102244013	287379	1215	100428											
RHBDL1	9028	broad.mit.edu	37	chr16	727795	727795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagtgagctccgaggtgGgccgggccgtgtggctgcgc	19	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	727795	T	T	727795	3	4	102	1	0	0	0	0	1	0	0	0	13430	1232	43	2	1086	2	RHBDL1	16	727795	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08		727795	89626958	1216	100429											
MSLNL	401827	broad.mit.edu	37	chr16	823010	823010	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaccagcgaggtgatgagCcgcagctgatcctccgggag	15	11	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	823010	A	A	823010	2	1	102	1	0	0	0	0	0	0	0	1	9976	726	26	3		3	MSLNL	16	823010	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	95215	823010	89531743	1217	100430											
THOC6	79228	broad.mit.edu	37	chr16	3074228	3074228	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaccagccaccttcgcgcCgaaggcggtagggcgccacg	14	17	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3074228	T	T	3074228	1	4	102	0	1	0	0	0	0	0	0	0	15992	667	23	4		4	THOC6	16	3074228	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	2251218	3074228	87280525	1218	100431											
SRL	6345	broad.mit.edu	37	chr16	4253001	4253001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcgtcctttccaactccCagggggagcccagacccaga	11	15	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4253001	A	A	4253001	1	1	102	0	1	0	0	0	0	0	0	0	15268	609	21	2		2	SRL	16	4253001	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1178773	4253001	86101752	1219	100432											
A2BP1	54715	broad.mit.edu	37	chr16	7714773	7714773	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctcggtttgctcaactgCcgttgtctccaacctcctta	6	14	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7714773	T	T	7714773	1	4	102	0	1	0	0	0	0	0	0	0	3	754	26	4		4	A2BP1	16	7714773	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3461772	7714773	82639980	1220	100433											
RUNDC2A	84127	broad.mit.edu	37	chr16	12145987	12145987	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagcttgatgtgaaaagCatcgatgatgaagatgtgga	13	4	0	6			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12145987	T	T	12145987	2	4	102	1	0	0	0	0	0	0	0	1	13854	709	25	4		4	RUNDC2A	16	12145987	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	4431214	12145987	78208766	1221	100434											
MYH11	4629	broad.mit.edu	37	chr16	15813990	15813990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctccacccatgccccaaGctcctagtgtcacccacctg	5	21	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15813990	T	T	15813990	1	4	102	0	1	0	0	0	0	0	0	0	10125	986	34	3		3	MYH11	16	15813990	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3668003	15813990	74540763	1222	100435											
TMC5	79838	broad.mit.edu	37	chr16	19488927	19488927	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttctcaagagccatcacaCtccgtatttggtattaatcc	6	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19488927	G	G	19488927	1	3	102	0	1	0	0	0	0	0	0	0	16111	580	20	4		4	TMC5	16	19488927	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3674937	19488927	70865826	1223	100436											
TMC5	79838	broad.mit.edu	37	chr16	19489007	19489007	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaggcaaaatgggtctcaaCaaaaaagctcaggttctaga	9	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19489007	G	G	19489007	1	3	102	0	1	0	0	0	0	0	0	0	16111	493	17	4		4	TMC5	16	19489007	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	80	19489007	70865746	1224	100437											
C16orf62	57020	broad.mit.edu	37	chr16	19567085	19567085	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggtaaggaagcagcggcGggtgggctttggagaggggc	21	6	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19567085	A	A	19567085	1	1	102	0	1	0	0	0	0	0	0	0	1839	1131	39	4		4	C16orf62	16	19567085	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	78078	19567085	70787668	1225	100438											
ACSM2A	123876	broad.mit.edu	37	chr16	20476974	20476974	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggagcctgtggcctgcagCgtggggatcgtgtggcagtg	20	9	0	0	rs13332099	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20476974	G	G	20476974	3	3	102	1	0	0	0	0	1	0	0	0	183	768	27	4	319	4	ACSM2A	16	20476974	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	909889	20476974	69877779	1226	100439											
ACSM2A	123876	broad.mit.edu	37	chr16	20482756	20482756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggcagatacacacacaCctctgcacacacacctccct	5	18	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20482756	A	A	20482756	1	1	102	0	1	0	0	0	0	0	0	0	183	522	18	3		3	ACSM2A	16	20482756	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	5782	20482756	69871997	1227	100440											
ACSM2B	348158	broad.mit.edu	37	chr16	20552210	20552210	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatctactcatttgcaccCccggtgatccaggtcaaggg	10	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20552210	A	A	20552210	1	1	102	0	1	0	0	0	0	0	0	0	184	638	22	2		2	ACSM2B	16	20552210	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	69454	20552210	69802543	1228	100441											
ACSM2B	348158	broad.mit.edu	37	chr16	20563831	20563831	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgataggagatgaatgttCggaaggtgggaccccagttg	15	5	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20563831	A	A	20563831	1	1	102	0	1	0	0	0	0	0	0	0	184	899	31	3		3	ACSM2B	16	20563831	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	11621	20563831	69790922	1229	100442											
ACSM2B	348158	broad.mit.edu	37	chr16	20576096	20576096	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagttgcctactattaatGtagagagtgcggctggacat	11	8	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20576096	A	A	20576096	2	1	102	1	0	0	0	0	0	0	0	1	184	1372	48	4		4	ACSM2B	16	20576096	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	12265	20576096	69778657	1230	100443											
METTL9	51108	broad.mit.edu	37	chr16	21624231	21624231	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacacaaaaagaaaagttAtcttgttcagcatgttgact	6	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21624231	G	G	21624231	1	3	102	0	1	0	0	0	0	0	0	0	9601	464	16	5		5	METTL9	16	21624231	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1048135	21624231	68730522	1231	100444											
TNRC6A	27327	broad.mit.edu	37	chr16	24815923	24815923	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttctacctgtttcctgttGatgctggaatgtcatgtgac	9	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24815923	T	T	24815923	1	4	102	0	1	0	0	0	0	0	0	0	16463	1305	45	3		3	TNRC6A	16	24815923	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3191692	24815923	65538830	1232	100445											
ARHGAP17	55114	broad.mit.edu	37	chr16	24979672	24979672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctggctcaagctgttacCtggctctgactgaatcccag	10	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24979672	A	A	24979672	3	1	102	1	0	0	0	0	1	0	0	0	869	695	24	2	2244	2	ARHGAP17	16	24979672	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	163749	24979672	65375081	1233	100446											
IL21R	50615	broad.mit.edu	37	chr16	27455957	27455957	+	Frame_Shift_Del	DEL	G	-	-													gagctatgagctgcaggtgcGggcagggcccatgcctggct							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27455957	-	-	27455957	7	5	102	1	0	1	0	1	0	0	0	0	7741	1116	39	0	620	0	IL21R	16	27455957	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	2476285	27455957	62898796	1234	100447											
IL21R	50615	broad.mit.edu	37	chr16	27460516	27460516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgtgacttcaccagccCcggggacgaaggaccccccc	13	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27460516	A	A	27460516	3	1	102	1	0	0	0	0	1	0	0	0	7741	623	22	2	1559	2	IL21R	16	27460516	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4559	27460516	62894237	1235	100448											
GTF3C1	2975	broad.mit.edu	37	chr16	27503586	27503586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaactcctaggcttttcTagccctaaatcccagttagc	7	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27503586	C	C	27503586	1	2	102	0	1	0	0	0	0	0	0	0	6937	1537	53	5		5	GTF3C1	16	27503586	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	43070	27503586	62851167	1236	100449											
GTF3C1	2975	broad.mit.edu	37	chr16	27544624	27544624	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggctcaccagctcttccctCagctttcccagcgtctctat	6	17	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27544624	T	T	27544624	2	4	102	1	0	0	0	0	0	0	0	1	6937	813	29	4		4	GTF3C1	16	27544624	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	41038	27544624	62810129	1237	100450											
APOB48R	55911	broad.mit.edu	37	chr16	28509361	28509361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggggaacgagtggaatccCgaagccggccccatggtcct	16	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28509361	A	A	28509361	1	1	102	0	1	0	0	0	0	0	0	0	788	667	23	1		1	APOB48R	16	28509361	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	964737	28509361	61845392	1238	100451											
ATP2A1	487	broad.mit.edu	37	chr16	28890516	28890516	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactccctcctccctgcctcTttagattctttgagcaaata	4	15	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28890516	C	C	28890516	1	2	102	0	1	0	0	0	0	0	0	0	1140	1624	56	5		5	ATP2A1	16	28890516	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	381155	28890516	61464237	1239	100452											
SEZ6L2	26470	broad.mit.edu	37	chr16	29898877	29898877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgaccttgtgatccgCctgcttcggcctcccaaagt	8	16	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29898877	A	A	29898877	1	1	102	0	1	0	0	0	0	0	0	0	14257	754	26	3		3	SEZ6L2	16	29898877	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1008361	29898877	60455876	1240	100453											
ITGAX	3687	broad.mit.edu	37	chr16	31368561	31368561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagccccccagcagcccGctgtgtccccaggcctgcgg	14	19	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31368561	T	T	31368561	1	4	102	0	1	0	0	0	0	0	0	0	7959	1102	38	3		3	ITGAX	16	31368561	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1469684	31368561	58986192	1241	100454											
ITGAX	3687	broad.mit.edu	37	chr16	31391489	31391489	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgaagtaccctcttgcAttcggatatggccgctgccc	10	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31391489	T	T	31391489	1	4	102	0	1	0	0	0	0	0	0	0	7959	232	8	5		5	ITGAX	16	31391489	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	22928	31391489	58963264	1242	100455											
ITGAD	3681	broad.mit.edu	37	chr16	31419214	31419214	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcatccagaagcagctgcAggagaagatctatgcagttg	12	9	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31419214	T	T	31419214	3	4	102	1	0	0	0	0	1	0	0	0	7954	188	7	5	1020	5	ITGAD	16	31419214	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	27725	31419214	58935539	1243	100456											
ITGAD	3681	broad.mit.edu	37	chr16	31422636	31422636	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgttcagcagagggtgcAgtggcagtgtgacgctgttc	16	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31422636	T	T	31422636	3	4	102	1	0	0	0	0	1	0	0	0	7954	188	7	5	1559	5	ITGAD	16	31422636	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	3422	31422636	58932117	1244	100457											
ABCC12	94160	broad.mit.edu	37	chr16	48138053	48138053	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaatagcacatgggcctacCgtaacagaatgaagaagcct	9	9	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48138053	G	G	48138053	3	3	102	1	0	0	0	0	1	0	0	0	52	666	23	4	1219	4	ABCC12	16	48138053	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	16715417	48138053	42216700	1245	100458											
ZNF423	23090	broad.mit.edu	37	chr16	49669980	49669980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaagcgtggaagtgactGtctgcatgcagaccacacag	12	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49669980	T	T	49669980	3	4	102	1	0	0	0	0	1	0	0	0	18025	1377	48	3	791	3	ZNF423	16	49669980	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1531927	49669980	40684773	1246	100459											
ZNF423	23090	broad.mit.edu	37	chr16	49670412	49670412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtcacagccgtacatgGgctccgacgcgtccacgtca	11	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49670412	T	T	49670412	3	4	102	1	0	0	0	0	1	0	0	0	18025	1232	43	2	1223	2	ZNF423	16	49670412	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	432	49670412	40684341	1247	100460											
BRD7	29117	broad.mit.edu	37	chr16	50356035	50356035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgtcaggagtttcttgGcaagagaaaatgaatacaaa	9	5	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50356035	T	T	50356035	1	4	102	0	1	0	0	0	0	0	0	0	1514	1218	42	3		3	BRD7	16	50356035	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	685623	50356035	39998718	1248	100461											
FTO	79068	broad.mit.edu	37	chr16	53878268	53878268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctaaatttagattataGgatttatattttgagtatgt	8	1	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53878268	T	T	53878268	1	4	102	0	1	0	0	0	0	0	0	0	6146	1015	35	2		2	FTO	16	53878268	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3522233	53878268	36476485	1249	100462											
CETP	1071	broad.mit.edu	37	chr16	56997135	56997135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggaaaggcagcagctgGgggactcaggtctctcccct	16	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56997135	T	T	56997135	1	4	102	0	1	0	0	0	0	0	0	0	3307	1247	43	2		2	CETP	16	56997135	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3118867	56997135	33357618	1250	100463											
NLRC5	84166	broad.mit.edu	37	chr16	57111108	57111108	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggctctctgtgtgagtcgAggcccttcctgggacttcag	15	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57111108	T	T	57111108	1	4	102	0	1	0	0	0	0	0	0	0	10565	319	11	5		5	NLRC5	16	57111108	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	113973	57111108	33243645	1251	100464											
CNGB1	1258	broad.mit.edu	37	chr16	57994334	57994334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccagttgatccctgagCccagcccgtgaccatcccag	11	17	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57994334	A	A	57994334	1	1	102	0	1	0	0	0	0	0	0	0	3632	754	26	3		3	CNGB1	16	57994334	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	883226	57994334	32360419	1252	100465											
CDH8	1006	broad.mit.edu	37	chr16	61823358	61823358	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attaatgttgaactgcctctCcaggtcagtgtgccggtcga	11	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61823358	A	A	61823358	4	1	102	1	0	0	0	0	0	1	0	0	3146	864	30	3	1113	3	CDH8	16	61823358	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3829024	61823358	28531395	1253	100466											
CDH11	1009	broad.mit.edu	37	chr16	65005902	65005902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataaggggcagcaaacttggGagcattatcgttgacatcaa	11	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65005902	A	A	65005902	3	1	102	1	0	0	0	0	1	0	0	0	3127	1174	41	4	950	4	CDH11	16	65005902	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3182544	65005902	25348851	1254	100467											
FAM65A	79567	broad.mit.edu	37	chr16	67575279	67575279	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcagacctcagatttcccAtgatctcatagcccctgcac	5	15	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67575279	G	G	67575279	1	3	102	0	1	0	0	0	0	0	0	0	5650	232	8	5		5	FAM65A	16	67575279	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2569377	67575279	22779474	1255	100468											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67855092	67855092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagctcctcctgctggaCctgggcacagattccaccca	10	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67855092	A	A	67855092	3	1	102	1	0	0	0	0	1	0	0	0	16757	506	18	3	195	3	TSNAXIP1	16	67855092	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	279813	67855092	22499661	1256	100469											
CDH3	1001	broad.mit.edu	37	chr16	68720472	68720472	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggattcaaccagttagCgtgaaagttggagataaagt	14	4	1	2	rs150184087	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68720472	T	T	68720472	1	4	102	0	1	0	0	0	0	0	0	0	3141	783	27	4		4	CDH3	16	68720472	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	865380	68720472	21634281	1257	100470											
CALB2	794	broad.mit.edu	37	chr16	71392788	71392788	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaagcactttgacgcagaCggtcagtaaagctcccaact	10	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71392788	G	G	71392788	3	3	102	1	0	0	0	0	1	0	0	0	2600	550	19	4	95	4	CALB2	16	71392788	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2672316	71392788	18961965	1258	100471											
ZFHX3	463	broad.mit.edu	37	chr16	72834018	72834018	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttggcatcaccatctcaGgggtggtcacctgaggagca	13	11	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72834018	C	C	72834018	3	2	102	1	0	0	0	0	1	0	0	0	17760	1000	35	4	7248	4	ZFHX3	16	72834018	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1441230	72834018	17520735	1259	100472											
MON1B	22879	broad.mit.edu	37	chr16	77227336	77227336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagatgacccaccagggGctccctttcaggatccaagg	11	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77227336	T	T	77227336	1	4	102	0	1	0	0	0	0	0	0	0	9793	1218	42	3		3	MON1B	16	77227336	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4393318	77227336	13127417	1260	100473											
ADAMTS18	170692	broad.mit.edu	37	chr16	77325413	77325413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtaaaagtgaagactgCcaggatcacatcttctggac	10	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77325413	A	A	77325413	1	1	102	0	1	0	0	0	0	0	0	0	263	754	26	3		3	ADAMTS18	16	77325413	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	98077	77325413	13029340	1261	100474											
CMIP	80790	broad.mit.edu	37	chr16	81743230	81743230	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagcccaggtagcccacaGcaccaaggtggggagagggt	16	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81743230	A	A	81743230	1	1	102	0	1	0	0	0	0	0	0	0	3610	986	34	4		4	CMIP	16	81743230	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4417817	81743230	8611523	1262	100475											
NECAB2	54550	broad.mit.edu	37	chr16	84035365	84035365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggctagagctaggattaaCaggggagccacacgcggagc	16	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84035365	T	T	84035365	1	4	102	0	1	0	0	0	0	0	0	0	10400	493	17	4		4	NECAB2	16	84035365	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2292135	84035365	6319388	1263	100476											
TCF25	22980	broad.mit.edu	37	chr16	89977673	89977673	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggtgaccgaaaagccGtatgatgatgttcccgattt	12	8	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89977673	A	A	89977673	1	1	102	0	1	0	0	0	0	0	0	0	15815	1160	40	4		4	TCF25	16	89977673	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	5942308	89977673	377080	1264	100477											
SLC43A2	124935	broad.mit.edu	37	chr17	1494602	1494602	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcacctccaggtcgacggTggacaggcacagcttgtggc	13	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1494602	A	A	1494602	3	1	102	1	0	0	0	0	1	0	0	0	14747	1696	59	5	845	5	SLC43A2	17	1494602	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08		1494602	79700608	1265	100478											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2866678	2866678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagtggtcagactttacGggcactgccgggactaacgg	13	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2866678	T	T	2866678	1	4	102	0	1	0	0	0	0	0	0	0	13146	1131	39	1		1	RAP1GAP2	17	2866678	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1372076	2866678	78328532	1266	100479											
CAMKK1	84254	broad.mit.edu	37	chr17	3779744	3779744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggggagcttgagctgagCgctggcctgggcaccgctgg	19	10	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3779744	A	A	3779744	1	1	102	0	1	0	0	0	0	0	0	0	2632	783	27	3		3	CAMKK1	17	3779744	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	913066	3779744	77415466	1267	100480											
ATP2A3	489	broad.mit.edu	37	chr17	3853733	3853733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaagtgctgggattaCaggcgtgatcataatcctaa	9	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3853733	A	A	3853733	1	1	102	0	1	0	0	0	0	0	0	0	1142	493	17	3		3	ATP2A3	17	3853733	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	73989	3853733	77341477	1268	100481											
USP6	9098	broad.mit.edu	37	chr17	5034004	5034004	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcatcctctatgctcccctCacccctaaagcagctgtctc	5	18	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5034004	T	T	5034004	1	4	102	0	1	0	0	0	0	0	0	0	17213	841	29	4		4	USP6	17	5034004	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1180271	5034004	76161206	1269	100482											
PITPNM3	83394	broad.mit.edu	37	chr17	6364785	6364785	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcatgccctgtgggaagtTgtgctgggacagccacgaca	14	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6364785	A	A	6364785	3	1	102	1	0	0	0	0	1	0	0	0	12047	1812	63	5	538	5	PITPNM3	17	6364785	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1330781	6364785	74830425	1270	100483											
DLG4	1742	broad.mit.edu	37	chr17	7095232	7095232	+	Silent	SNP	G	A	A													agcacattctccagggagcgGgggcggatgaagatggcgat							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7095232	A	A	7095232	2	1	102	1	0	0	0	0	0	0	0	1	4597	1219	43	4		4	DLG4	17	7095232	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	730447	7095232	74099978	1271	100484	435	2									
DLG4	1742	broad.mit.edu	37	chr17	7095235	7095235	+	Silent	SNP	G	C	C													acattctccagggagcggggGcggatgaagatggcgatggg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7095235	C	C	7095235	2	2	102	1	0	0	0	0	0	0	0	1	4597	1190	42	4		4	DLG4	17	7095235	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3	7095235	74099975	1272	100485	435	2									
DVL2	1856	broad.mit.edu	37	chr17	7133798	7133798	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcacttgggagtcagggtgTgacaggtggcagtaagtgaa	16	6	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7133798	A	A	7133798	1	1	102	0	1	0	0	0	0	0	0	0	4876	1711	59	5		5	DVL2	17	7133798	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	38563	7133798	74061412	1273	100486											
CHRNB1	1140	broad.mit.edu	37	chr17	7358600	7358600	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatacgcctcttctactctgCagatcttcattcacaaactt	3	13	6	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7358600	G	G	7358600	1	3	102	0	1	0	0	0	0	0	0	0	3421	725	25	4		4	CHRNB1	17	7358600	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	224802	7358600	73836610	1274	100487											
CNTROB	116840	broad.mit.edu	37	chr17	7836274	7836274	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatatccttaattcaccaagGatccttggcgtggagtcttc	9	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7836274	A	A	7836274	1	1	102	0	1	0	0	0	0	0	0	0	3683	1189	41	4		4	CNTROB	17	7836274	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	477674	7836274	73358936	1275	100488											
C17orf68	80169	broad.mit.edu	37	chr17	8135134	8135134	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagaaaatgaggtgaacCtgggaggatggagagcaaag	15	5	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8135134	A	A	8135134	5	1	102	1	0	0	0	0	0	0	1	0	1892	695	24	2	1308	2	C17orf68	17	8135134	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	298860	8135134	73060076	1276	100489											
PIK3R5	23533	broad.mit.edu	37	chr17	8809052	8809052	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgtaggtgcccttctcctgGacctgtggagaggaggagaa	15	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8809052	T	T	8809052	2	4	102	1	0	0	0	0	0	0	0	1	12017	1161	41	3		3	PIK3R5	17	8809052	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	673918	8809052	72386158	1277	100490											
NTN1	9423	broad.mit.edu	37	chr17	9086206	9086206	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttgttttctctcctcccCtcgcccccgtcttgaacctc	4	20	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9086206	G	G	9086206	1	3	102	0	1	0	0	0	0	0	0	0	10795	696	24	4		4	NTN1	17	9086206	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	277154	9086206	72109004	1278	100491											
USP43	124739	broad.mit.edu	37	chr17	9604600	9604600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgccccggccgggaagggGgctggctgcctttggtgggt	19	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9604600	A	A	9604600	1	1	102	0	1	0	0	0	0	0	0	0	17201	1247	43	4		4	USP43	17	9604600	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	518394	9604600	71590610	1279	100492											
GLP2R	9340	broad.mit.edu	37	chr17	9765242	9765242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgggaagtagggcttgaGtgcaagcatccttcttccag	14	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9765242	T	T	9765242	1	4	102	0	1	0	0	0	0	0	0	0	6517	1044	36	3		3	GLP2R	17	9765242	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	160642	9765242	71429968	1280	100493											
MYH13	8735	broad.mit.edu	37	chr17	10248473	10248473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagagcaagaaggggagGgcccccaataaggaggagct	15	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10248473	T	T	10248473	1	4	102	0	1	0	0	0	0	0	0	0	10126	1247	43	2		2	MYH13	17	10248473	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	483231	10248473	70946737	1281	100494											
MYH1	4619	broad.mit.edu	37	chr17	10400284	10400284	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attctcatccctagttcatgGagcaaaaattatttttcgtt	5	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10400284	T	T	10400284	1	4	102	0	1	0	0	0	0	0	0	0	10123	1189	41	3		3	MYH1	17	10400284	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	151811	10400284	70794926	1282	100495											
MYH2	4620	broad.mit.edu	37	chr17	10430338	10430338	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgataactgagacaccaGagcttccttttcatcaagct	6	11	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10430338	C	C	10430338	3	2	102	1	0	0	0	0	1	0	0	0	10129	933	33	4	1966	4	MYH2	17	10430338	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	30054	10430338	70764872	1283	100496											
MYH2	4620	broad.mit.edu	37	chr17	10433465	10433465	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggataagagtgtatgtttcTgcatttgatcttttgaattt	9	3	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10433465	A	A	10433465	1	1	102	0	1	0	0	0	0	0	0	0	10129	1595	55	5		5	MYH2	17	10433465	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	3127	10433465	70761745	1284	100497											
MYH3	4621	broad.mit.edu	37	chr17	10543834	10543834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttcctagagaagctgtGtcaagaggacgaaaaggcca	12	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10543834	T	T	10543834	1	4	102	0	1	0	0	0	0	0	0	0	10130	1392	48	3		3	MYH3	17	10543834	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	110369	10543834	70651376	1285	100498											
DNAH9	1770	broad.mit.edu	37	chr17	11543762	11543762	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgttcctgctctagaatcTgagtgttgtagaaatgcaac	10	8	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11543762	A	A	11543762	1	1	102	0	1	0	0	0	0	0	0	0	4648	1595	55	5		5	DNAH9	17	11543762	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	999928	11543762	69651448	1286	100499											
DNAH9	1770	broad.mit.edu	37	chr17	11865393	11865393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgacaggcttcttcaaCccccagtcgttcctgactgc	9	15	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11865393	A	A	11865393	3	1	102	1	0	0	0	0	1	0	0	0	4648	506	18	3	13323	3	DNAH9	17	11865393	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	321631	11865393	69329817	1287	100500											
FAM18B2	201158	broad.mit.edu	37	chr17	15406305	15406305	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataggcgggcgggcgccatcTgttggcagttgcctggagcc	17	11	1	0	rs141163711		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15406305	G	G	15406305	3	3	102	1	0	0	0	0	1	0	0	0	5567	1580	55	5	130	5	FAM18B2	17	15406305	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	3540912	15406305	65788905	1288	100501											
ZNF287	57336	broad.mit.edu	37	chr17	16456684	16456684	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggtatgggtttcttcctTtgtgagtttagacatatcct	10	6	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16456684	C	C	16456684	3	2	102	1	0	0	0	0	1	0	0	0	17951	1850	64	5	1517	5	ZNF287	17	16456684	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1050379	16456684	64738526	1289	100502											
SHMT1	6470	broad.mit.edu	37	chr17	18243551	18243551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgggcatattccaggtttCgggagtagcagctggttcct	14	10	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18243551	A	A	18243551	3	1	102	1	0	0	0	0	1	0	0	0	14398	884	31	3	855	3	SHMT1	17	18243551	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1786867	18243551	62951659	1290	100503											
ULK2	9706	broad.mit.edu	37	chr17	19713872	19713872	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattaccattggcttatgttAtgatttcatgtataagaaat	6	4	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19713872	G	G	19713872	1	3	102	0	1	0	0	0	0	0	0	0	17102	464	16	5		5	ULK2	17	19713872	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1470321	19713872	61481338	1291	100504											
MAP2K3	5606	broad.mit.edu	37	chr17	21208458	21208458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtactgtggggggccagGgcctgcccttggtggtcagg	19	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21208458	T	T	21208458	1	4	102	0	1	0	0	0	0	0	0	0	9330	1247	43	2		2	MAP2K3	17	21208458	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1494586	21208458	59986752	1292	100505											
KCNJ12	3768	broad.mit.edu	37	chr17	21318872	21318872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctggctgacatgttcaCcacctgtgtggacatccgct	9	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21318872	A	A	21318872	3	1	102	1	0	0	0	0	1	0	0	0	8116	507	18	3	220	3	KCNJ12	17	21318872	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	110414	21318872	59876338	1293	100506											
NOS2	4843	broad.mit.edu	37	chr17	26116061	26116061	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtggccacacagggcagGgtgtccctccacgtccctcc	13	16	0	0	rs28998832	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26116061	A	A	26116061	1	1	102	0	1	0	0	0	0	0	0	0	10638	1247	43	4		4	NOS2	17	26116061	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4797189	26116061	55079149	1294	100507											
SLC13A2	9058	broad.mit.edu	37	chr17	26800700	26800700	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacccagctcctggaggcaGtggctgtagcagcccttgct	12	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26800700	C	C	26800700	1	2	102	0	1	0	0	0	0	0	0	0	14505	1044	36	4		4	SLC13A2	17	26800700	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	684639	26800700	54394510	1295	100508											
KIAA0100	9703	broad.mit.edu	37	chr17	26955577	26955577	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatcacgagcagagagctCctaagaaacaggaaaaggac	10	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26955577	A	A	26955577	4	1	102	1	0	0	0	0	0	1	0	0	8224	869	30	3	2471	3	KIAA0100	17	26955577	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	154877	26955577	54239633	1296	100509											
SLC6A4	6532	broad.mit.edu	37	chr17	28539837	28539837	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtgaagatgacaaatccCgaaacgaagctcgtcatgca	9	10	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28539837	T	T	28539837	2	4	102	1	0	0	0	0	0	0	0	1	14800	639	23	4		4	SLC6A4	17	28539837	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1584260	28539837	52655373	1297	100510											
CPD	1362	broad.mit.edu	37	chr17	28772927	28772927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaaagcctcatgttacGctcctcctcaaatctggctc	7	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28772927	T	T	28772927	3	4	102	1	0	0	0	0	1	0	0	0	3830	1087	38	3	2808	3	CPD	17	28772927	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	233090	28772927	52422283	1298	100511											
NF1	4763	broad.mit.edu	37	chr17	29654692	29654692	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgctcaccttcatgcaccAggagtgtgaagccattgtcc	10	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29654692	T	T	29654692	3	4	102	1	0	0	0	0	1	0	0	0	10451	188	7	5	5655	5	NF1	17	29654692	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	881765	29654692	51540518	1299	100512											
UTP6	55813	broad.mit.edu	37	chr17	30207728	30207728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctaattctcgccttgcCacataatcccaagtgagagg	7	12	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30207728	A	A	30207728	2	1	102	1	0	0	0	0	0	0	0	1	17229	581	21	2		2	UTP6	17	30207728	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	553036	30207728	50987482	1300	100513											
MYO1D	4642	broad.mit.edu	37	chr17	31047862	31047862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttttcatggtccataaaCcatgaattcagggactcatg	7	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31047862	A	A	31047862	1	1	102	0	1	0	0	0	0	0	0	0	10165	522	18	3		3	MYO1D	17	31047862	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	840134	31047862	50147348	1301	100514											
SLFN12L	342615	broad.mit.edu	37	chr17	33802074	33802074	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtctttcattgtttgagcTgttgtccaatagtaggattc	9	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33802074	C	C	33802074	2	2	102	1	0	0	0	0	0	0	0	1	14849	1567	55	5		5	SLFN12L	17	33802074	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	2754212	33802074	47393136	1302	100515											
SLFN12L	342615	broad.mit.edu	37	chr17	33806457	33806457	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctttatcttcatttagacCaacgaataaatatcctccat	2	10	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33806457	G	G	33806457	3	3	102	1	0	0	0	0	1	0	0	0	14849	594	21	4	1006	4	SLFN12L	17	33806457	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4383	33806457	47388753	1303	100516											
AP2B1	163	broad.mit.edu	37	chr17	33932609	33932609	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgacagttaccactgtGgggacatttgttcttgcatc	10	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33932609	T	T	33932609	1	4	102	0	1	0	0	0	0	0	0	0	743	1363	47	2		2	AP2B1	17	33932609	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	126152	33932609	47262601	1304	100517											
LYZL6	57151	broad.mit.edu	37	chr17	34263665	34263665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctttctagacactgcaaGggcgtgcccgtgagtccttg	11	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34263665	T	T	34263665	1	4	102	0	1	0	0	0	0	0	0	0	9222	1015	35	2		2	LYZL6	17	34263665	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	331056	34263665	46931545	1305	100518											
SYNRG	11276	broad.mit.edu	37	chr17	35900314	35900314	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctgggaaatgttttcacCcagggctaatgttacccttg	9	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35900314	G	G	35900314	1	3	102	0	1	0	0	0	0	0	0	0	15579	638	22	4		4	SYNRG	17	35900314	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1636649	35900314	45294896	1306	100519											
NEUROD2	4761	broad.mit.edu	37	chr17	37762573	37762573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgctcgccctccgcctcgtCcagtccttcttcctcctcct	5	23	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37762573	A	A	37762573	3	1	102	1	0	0	0	0	1	0	0	0	10444	855	30	3	872	3	NEUROD2	17	37762573	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1862259	37762573	43432637	1307	100520											
KRTAP4-11	653240	broad.mit.edu	37	chr17	39274398	39274398	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtgggctggcagcacacaGactggcagcactggggcctg	17	11	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39274398	T	T	39274398	3	4	102	1	0	0	0	0	1	0	0	0	8621	942	33	3	421	3	KRTAP4-11	17	39274398	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1511825	39274398	41920812	1308	100521											
KRTAP4-4	84616	broad.mit.edu	37	chr17	39316477	39316477	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggccacaatggggcctgTagcacctggacacacagcag	12	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39316477	C	C	39316477	3	2	102	1	0	0	0	0	1	0	0	0	8625	1638	57	5	37	5	KRTAP4-4	17	39316477	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	42079	39316477	41878733	1309	100522											
GHDC	84514	broad.mit.edu	37	chr17	40342359	40342359	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagtctagtgtcctctgccCtatctgttcttccccactct	5	16	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40342359	G	G	40342359	1	3	102	0	1	0	0	0	0	0	0	0	6433	681	24	4		4	GHDC	17	40342359	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1025882	40342359	40852851	1310	100523											
STAT3	6774	broad.mit.edu	37	chr17	40468916	40468916	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcaatggtattgctgcaggtCgttctgtaggaaatgggggg	16	5	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40468916	G	G	40468916	2	3	102	1	0	0	0	0	0	0	0	1	15384	871	31	4		4	STAT3	17	40468916	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	126557	40468916	40726294	1311	100524											
EZH1	2145	broad.mit.edu	37	chr17	40872313	40872313	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaatagcatgtcgctttctCtttcttgttactggcagatc	7	10	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40872313	G	G	40872313	3	3	102	1	0	0	0	0	1	0	0	0	5376	912	32	4	1661	4	EZH1	17	40872313	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	403397	40872313	40322897	1312	100525											
CRHR1	1394	broad.mit.edu	37	chr17	43906640	43906640	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactacctgggccactgtatCtccctggtggccctcctggt	10	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43906640	T	T	43906640	2	4	102	1	0	0	0	0	0	0	0	1	3903	903	32	4		4	CRHR1	17	43906640	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	3034327	43906640	37288570	1313	100526											
MYL4	4635	broad.mit.edu	37	chr17	45299788	45299788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggagcagctgttagctgGgcaagaggatgccaatggct	16	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45299788	T	T	45299788	3	4	102	1	0	0	0	0	1	0	0	0	10143	1232	43	2	548	2	MYL4	17	45299788	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1393148	45299788	35895422	1314	100527											
KPNB1	3837	broad.mit.edu	37	chr17	45741486	45741486	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggcagggactcacttgaatCagtacttatttggggcctgg	14	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45741486	G	G	45741486	1	3	102	0	1	0	0	0	0	0	0	0	8506	841	29	4		4	KPNB1	17	45741486	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	441698	45741486	35453724	1315	100528											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46058411	46058411	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaagggtttaaggatGtgagggtaagcggccagttg	17	3	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46058411	A	A	46058411	1	1	102	0	1	0	0	0	0	0	0	0	3177	1392	48	4		4	CDK5RAP3	17	46058411	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	316925	46058411	35136799	1316	100529											
HOXB5	3215	broad.mit.edu	37	chr17	46671083	46671083	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgatttgtggatcgtggtCgttataaccctgtgcttcac	10	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46671083	A	A	46671083	1	1	102	0	1	0	0	0	0	0	0	0	7371	899	31	3		3	HOXB5	17	46671083	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	612672	46671083	34524127	1317	100530											
COL1A1	1277	broad.mit.edu	37	chr17	48272811	48272811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacattggcacctttagcaCcaggctgtccatcagcacca	7	14	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48272811	A	A	48272811	3	1	102	1	0	0	0	0	1	0	0	0	3709	507	18	3	3346	3	COL1A1	17	48272811	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1601728	48272811	32922399	1318	100531											
CACNA1G	8913	broad.mit.edu	37	chr17	48694965	48694965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgcacctgccctcctaGggtgaccagcccagggagag	12	17	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48694965	T	T	48694965	1	4	102	0	1	0	0	0	0	0	0	0	2570	1015	35	2		2	CACNA1G	17	48694965	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	422154	48694965	32500245	1319	100532											
CACNA1G	8913	broad.mit.edu	37	chr17	48695501	48695501	+	Intron	DEL	G	-	-													gacctgggtgagttggggtaGgggagggtggaggagccagg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48695501	-	-	48695501	6	5	102	0	1	1	0	1	0	0	0	0	2570	1015	35	0		0	CACNA1G	17	48695501	Intron	DEL	G	TCGA-38-4631-01A-01D-1753-08	536	48695501	32499709	1320	100533											
KIF2B	84643	broad.mit.edu	37	chr17	51900651	51900651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatccagctctggactctgCtgaacaccccatgccgcccc	8	18	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51900651	A	A	51900651	3	1	102	1	0	0	0	0	1	0	0	0	8368	797	28	3	259	3	KIF2B	17	51900651	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3205150	51900651	29294559	1321	100534											
MMD	23531	broad.mit.edu	37	chr17	53485075	53485075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattctaatcataaaatcaCtaccttcgaaaataggaaga	5	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53485075	A	A	53485075	1	1	102	0	1	0	0	0	0	0	0	0	9736	580	20	3		3	MMD	17	53485075	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1584424	53485075	27710135	1322	100535											
ANKFN1	162282	broad.mit.edu	37	chr17	54526383	54526383	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggctcctgacgcagggcaAggaagaggcctcccctgttt	13	14	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54526383	T	T	54526383	1	4	102	0	1	0	0	0	0	0	0	0	625	87	3	5		5	ANKFN1	17	54526383	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1041308	54526383	26668827	1323	100536											
BZRAP1	9256	broad.mit.edu	37	chr17	56381772	56381772	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcgttctctgaggacaggGaacaaagagaggagatgggt	15	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56381772	A	A	56381772	1	1	102	0	1	0	0	0	0	0	0	0	1587	1189	41	4		4	BZRAP1	17	56381772	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1855389	56381772	24813438	1324	100537											
TMEM49	81671	broad.mit.edu	37	chr17	57916972	57916972	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttgggtgtaaaaaggagaGtaatggagatttcagagtag	15	1	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57916972	C	C	57916972	1	2	102	0	1	0	0	0	0	0	0	0	16296	1044	36	4		4	TMEM49	17	57916972	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1535200	57916972	23278238	1325	100538											
GH1	2688	broad.mit.edu	37	chr17	61995506	61995506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcttcttcctaggagaaGgaccgcccaccaaggtctac	10	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61995506	T	T	61995506	1	4	102	0	1	0	0	0	0	0	0	0	6431	1015	35	2		2	GH1	17	61995506	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4078534	61995506	19199704	1326	100539											
APOH	350	broad.mit.edu	37	chr17	64208331	64208331	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggggagaaaaagataaacAttctaagagaaacaatcatt	9	4	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64208331	T	T	64208331	1	4	102	0	1	0	0	0	0	0	0	0	806	232	8	5		5	APOH	17	64208331	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2212825	64208331	16986879	1327	100540											
ABCA9	10350	broad.mit.edu	37	chr17	67028172	67028172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcacagaaggcgatctttGctcctagtgtgtcacctgac	12	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67028172	T	T	67028172	1	4	102	0	1	0	0	0	0	0	0	0	39	1334	46	3		3	ABCA9	17	67028172	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2819841	67028172	14167038	1328	100541											
ABCA6	23460	broad.mit.edu	37	chr17	67113957	67113957	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttatctacatatttcAaattttttcacattgaatgt	3	6	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67113957	C	C	67113957	1	2	102	0	1	0	0	0	0	0	0	0	36	145	5	5		5	ABCA6	17	67113957	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	85785	67113957	14081253	1329	100542											
ABCA6	23460	broad.mit.edu	37	chr17	67130881	67130881	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accatatccatcccagcaatGagctgtaagcacaaagaaaa	6	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67130881	T	T	67130881	3	4	102	1	0	0	0	0	1	0	0	0	36	1290	45	3	4530	3	ABCA6	17	67130881	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	16924	67130881	14064329	1330	100543											
MAP2K6	5608	broad.mit.edu	37	chr17	67521011	67521011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgttatctcaattgtcttcCcagtttctcagttgtctgtc	6	11	4	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67521011	T	T	67521011	1	4	102	0	1	0	0	0	0	0	0	0	9333	638	22	4		4	MAP2K6	17	67521011	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	390130	67521011	13674199	1331	100544											
COG1	9382	broad.mit.edu	37	chr17	71204463	71204464	+	Frame_Shift_Ins	INS	-	G	G													caatggcaggttgtccccccINSggcacgctccacagctggtg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71204464	G	G	71204463	7	5	102	1	0	1	1	0	0	0	0	0	3689	652	23	0	2870	0	COG1	17	71204463	Frame_Shift_Ins	INS	-	TCGA-38-4631-01A-01D-1753-08	3683452	71204463	9990747	1332	100545											
TTYH2	94015	broad.mit.edu	37	chr17	72240154	72240154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagcctgctcctcagttGggcatccctggccgctgatg	12	14	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72240154	T	T	72240154	3	4	102	1	0	0	0	0	1	0	0	0	16866	1357	47	2	792	2	TTYH2	17	72240154	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1035691	72240154	8955056	1333	100546											
TTYH2	94015	broad.mit.edu	37	chr17	72246281	72246281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggctctctgttctccCgcccccgtgactcggctccc	9	20	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72246281	A	A	72246281	1	1	102	0	1	0	0	0	0	0	0	0	16866	667	23	1		1	TTYH2	17	72246281	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	6127	72246281	8948929	1334	100547											
DNAI2	64446	broad.mit.edu	37	chr17	72278172	72278172	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagggccctggcctgtcAggtgtggccaggcagggcgg	18	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72278172	T	T	72278172	1	4	102	0	1	0	0	0	0	0	0	0	4650	203	7	5		5	DNAI2	17	72278172	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	31891	72278172	8917038	1335	100548											
GPR142	350383	broad.mit.edu	37	chr17	72368433	72368433	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcacagccatcctcctgggCatcaccacactgttcaccct	6	18	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72368433	G	G	72368433	2	3	102	1	0	0	0	0	0	0	0	1	6715	697	25	4		4	GPR142	17	72368433	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	90261	72368433	8826777	1336	100549											
OTOP2	92736	broad.mit.edu	37	chr17	72921751	72921751	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagccatcaagatcctGcaccccctcatccaggctgt	7	17	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72921751	T	T	72921751	2	4	102	1	0	0	0	0	0	0	0	1	11400	1306	46	3		3	OTOP2	17	72921751	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	553318	72921751	8273459	1337	100550											
MIF4GD	57409	broad.mit.edu	37	chr17	73262985	73262985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaagagctcatccatgcGctgcccattcattttctcca	5	15	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73262985	T	T	73262985	3	4	102	1	0	0	0	0	1	0	0	0	9677	1087	38	3	167	3	MIF4GD	17	73262985	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	341234	73262985	7932225	1338	100551											
MIF4GD	57409	broad.mit.edu	37	chr17	73263869	73263869	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagataaaggtgacatagcaGacccagccctgcagggagcg	13	11	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73263869	T	T	73263869	2	4	102	1	0	0	0	0	0	0	0	1	9677	929	33	3		3	MIF4GD	17	73263869	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	884	73263869	7931341	1339	100552											
UNC13D	201294	broad.mit.edu	37	chr17	73836587	73836587	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctttcctcatcctcctcaCctgcagcctcagaaccacgt	4	20	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73836587	T	T	73836587	5	4	102	1	0	0	0	0	0	0	1	0	17113	521	18	4	2614	4	UNC13D	17	73836587	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	572718	73836587	7358623	1340	100553											
MGAT5B	146664	broad.mit.edu	37	chr17	74934235	74934235	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggccaaagtgagctccCatcccccgcaccattctcac	7	18	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74934235	T	T	74934235	1	4	102	0	1	0	0	0	0	0	0	0	9642	609	21	4		4	MGAT5B	17	74934235	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1097648	74934235	6260975	1341	100554											
TMC8	147138	broad.mit.edu	37	chr17	76130845	76130845	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaatagcttacaggcgaccCtattctgggcctgccccaga	11	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76130845	T	T	76130845	1	4	102	0	1	0	0	0	0	0	0	0	16114	696	24	4		4	TMC8	17	76130845	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1196610	76130845	5064365	1342	100555											
ENGASE	64772	broad.mit.edu	37	chr17	77075478	77075478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctggtcttaaactcctGggctcaagtgatccacctgc	10	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77075478	T	T	77075478	1	4	102	0	1	0	0	0	0	0	0	0	5160	1363	47	2		2	ENGASE	17	77075478	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	944633	77075478	4119732	1343	100556											
CCDC40	55036	broad.mit.edu	37	chr17	78070929	78070929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccattcctctttgggaGcctccctggatggagtgtgt	11	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78070929	T	T	78070929	1	4	102	0	1	0	0	0	0	0	0	0	2839	986	34	3		3	CCDC40	17	78070929	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	995451	78070929	3124281	1344	100557											
FLJ35220	284131	broad.mit.edu	37	chr17	78398799	78398799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcaccaagaagagagggGtttttttccccatttttccc	7	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78398799	T	T	78398799	1	4	102	0	1	0	0	0	0	0	0	0	5984	1276	44	3		3	FLJ35220	17	78398799	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	327870	78398799	2796411	1345	100558											
RPTOR	57521	broad.mit.edu	37	chr17	78865276	78865276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgtgcgcctctagcagtGgggaggattctggcaggcat	16	10	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78865276	T	T	78865276	1	4	102	0	1	0	0	0	0	0	0	0	13776	1363	47	2		2	RPTOR	17	78865276	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	466477	78865276	2329934	1346	100559											
DCXR	51181	broad.mit.edu	37	chr17	79994492	79994492	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgatggcccctgggactcCccgggctattaagcccctgg	12	16	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79994492	A	A	79994492	4	1	102	1	0	0	0	0	0	1	0	0	4352	632	22	2	374	2	DCXR	17	79994492	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1129216	79994492	1200718	1347	100560											
COLEC12	81035	broad.mit.edu	37	chr18	346494	346494	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagatcatctgtgtgtttGgtaagggtatctgtgcaagt	13	5	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	346494	T	T	346494	2	4	102	1	0	0	0	0	0	0	0	1	3744	1335	47	2		2	COLEC12	18	346494	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08		346494	77730754	1348	100561											
ENOSF1	55556	broad.mit.edu	37	chr18	677487	677487	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taataccaagagtagggcagGgagaggaaggggtgaaaggg	19	3	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	677487	A	A	677487	1	1	102	0	1	0	0	0	0	0	0	0	5167	1247	43	4		4	ENOSF1	18	677487	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	330993	677487	77399761	1349	100562											
EMILIN2	84034	broad.mit.edu	37	chr18	2847926	2847926	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgccctgtccgtcggcgcTggtgtaagtcctggagccgg	16	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2847926	A	A	2847926	3	1	102	1	0	0	0	0	1	0	0	0	5136	1580	55	5	260	5	EMILIN2	18	2847926	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2170439	2847926	75229322	1350	100563											
DLGAP1	9229	broad.mit.edu	37	chr18	3845282	3845282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatggaaaattaagttcaTtattcatctcagctttgatt	5	5	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3845282	C	C	3845282	1	2	102	0	1	0	0	0	0	0	0	0	4599	1493	52	5		5	DLGAP1	18	3845282	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	997356	3845282	74231966	1351	100564											
EPB41L3	23136	broad.mit.edu	37	chr18	5406687	5406687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagagagattttctaccCagaagactgtcaaatgcaat	9	7	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5406687	A	A	5406687	1	1	102	0	1	0	0	0	0	0	0	0	5196	609	21	2		2	EPB41L3	18	5406687	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1561405	5406687	72670561	1352	100565											
EPB41L3	23136	broad.mit.edu	37	chr18	5410547	5410547	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtatgccactaccagccactCtcagccaaaataccaacctc	4	17	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5410547	A	A	5410547	1	1	102	0	1	0	0	0	0	0	0	0	5196	928	32	3		3	EPB41L3	18	5410547	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3860	5410547	72666701	1353	100566											
LRRC30	339291	broad.mit.edu	37	chr18	7231772	7231772	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcacctggccagcctgcaGatcttcatcgcagagggcaa	11	14	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7231772	C	C	7231772	3	2	102	1	0	0	0	0	1	0	0	0	9072	933	33	4	638	4	LRRC30	18	7231772	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1821225	7231772	70845476	1354	100567											
LRRC30	339291	broad.mit.edu	37	chr18	7231799	7231799	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcgcagagggcaacaacatCcactccttcccgaggtcgct	9	15	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7231799	A	A	7231799	2	1	102	1	0	0	0	0	0	0	0	1	9072	845	30	3		3	LRRC30	18	7231799	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	27	7231799	70845449	1355	100568											
KIAA0802	23255	broad.mit.edu	37	chr18	8783929	8783929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctggagtcctccactgaGctccgccgccacctgcagtt	9	18	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8783929	T	T	8783929	3	4	102	1	0	0	0	0	1	0	0	0	8264	962	34	3	833	3	KIAA0802	18	8783929	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1552130	8783929	69293319	1356	100569											
TWSG1	57045	broad.mit.edu	37	chr18	9337148	9337148	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttttatatttgtttttacCctagcacttgcctttgaatt	4	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9337148	T	T	9337148	1	4	102	0	1	0	0	0	0	0	0	0	16911	638	22	4		4	TWSG1	18	9337148	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	553219	9337148	68740100	1357	100570											
SPIRE1	56907	broad.mit.edu	37	chr18	12496079	12496079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgagcactcttttttaacCgagggggaatatcaccattc	8	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12496079	A	A	12496079	3	1	102	1	0	0	0	0	1	0	0	0	15189	652	23	1	1319	1	SPIRE1	18	12496079	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3158931	12496079	65581169	1358	100571											
CABLES1	91768	broad.mit.edu	37	chr18	20774598	20774598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccaaaactcagcaaacGcaagcccacacttttaagat	7	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20774598	T	T	20774598	1	4	102	0	1	0	0	0	0	0	0	0	2555	1102	38	3		3	CABLES1	18	20774598	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	8278519	20774598	57302650	1359	100572											
DSG2	1829	broad.mit.edu	37	chr18	29111028	29111028	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcttttcacaagtcgattAggagtaaatacaagcctaca	7	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29111028	T	T	29111028	3	4	102	1	0	0	0	0	1	0	0	0	4817	411	15	5	1127	5	DSG2	18	29111028	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	8336430	29111028	48966220	1360	100573											
FAM59A	64762	broad.mit.edu	37	chr18	29867399	29867399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgccatacacacagacCgagagtcggtggaaggactg	13	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29867399	A	A	29867399	2	1	102	1	0	0	0	0	0	0	0	1	5643	639	23	1		1	FAM59A	18	29867399	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	756371	29867399	48209849	1361	100574											
NOL4	8715	broad.mit.edu	37	chr18	31599524	31599524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagcaattgaactgtgccCcagagtctcattgccattaa	8	10	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31599524	A	A	31599524	3	1	102	1	0	0	0	0	1	0	0	0	10619	623	22	2	1126	2	NOL4	18	31599524	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1732125	31599524	46477724	1362	100575											
DTNA	1837	broad.mit.edu	37	chr18	32407638	32407638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagtccttttattaccagGaggtaagttccaaccctatt	8	9	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32407638	T	T	32407638	3	4	102	1	0	0	0	0	1	0	0	0	4828	1165	41	3	1130	3	DTNA	18	32407638	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	808114	32407638	45669610	1363	100576											
MAPRE2	10982	broad.mit.edu	37	chr18	32677326	32677326	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgatgatggtgcctgtaagGacaatccccttccagcctag	11	11	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32677326	T	T	32677326	1	4	102	0	1	0	0	0	0	0	0	0	9387	1189	41	3		3	MAPRE2	18	32677326	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	269688	32677326	45399922	1364	100577											
SLC14A2	8170	broad.mit.edu	37	chr18	43204724	43204724	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccagcccgagctggccctCgacatccccggatactcacc	8	19	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43204724	A	A	43204724	4	1	102	1	0	0	0	0	0	1	0	0	14510	893	31	3	97	3	SLC14A2	18	43204724	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	10527398	43204724	34872524	1365	100578											
SLC14A2	8170	broad.mit.edu	37	chr18	43253070	43253070	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcctggggccagctccaaAtaaaatggtgactctcatct	10	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43253070	T	T	43253070	1	4	102	0	1	0	0	0	0	0	0	0	14510	116	4	5		5	SLC14A2	18	43253070	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	48346	43253070	34824178	1366	100579											
SLC14A2	8170	broad.mit.edu	37	chr18	43262194	43262194	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcaaagcagtccctcatGtccccagggctgtaggtgat	10	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43262194	T	T	43262194	1	4	102	0	1	0	0	0	0	0	0	0	14510	1392	48	3		3	SLC14A2	18	43262194	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	9124	43262194	34815054	1367	100580											
TCEB3C	162699	broad.mit.edu	37	chr18	44554666	44554666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttcgggttttgtccgcGggcgccgcgtgccggttgct	16	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44554666	T	T	44554666	2	4	102	1	0	0	0	0	0	0	0	1	15805	1103	39	1		1	TCEB3C	18	44554666	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1292472	44554666	33522582	1368	100581											
MAPK4	5596	broad.mit.edu	37	chr18	48255621	48255621	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacccgcgcgcgggttcggcGccactggctgaggacgtgca	17	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48255621	C	C	48255621	2	2	102	1	0	0	0	0	0	0	0	1	9372	1074	38	4		4	MAPK4	18	48255621	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3700955	48255621	29821627	1369	100582											
DCC	1630	broad.mit.edu	37	chr18	50432650	50432650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accgatgctcagctcgaaatCcagccagctcaagaacagga	9	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50432650	A	A	50432650	3	1	102	1	0	0	0	0	1	0	0	0	4315	855	30	3	659	3	DCC	18	50432650	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2177029	50432650	27644598	1370	100583											
DCC	1630	broad.mit.edu	37	chr18	51025665	51025666	+	Splice_Site	DNP	CA	AG	AG													gacttttcttgtctccactgCagcagtgagtgaaggaccaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	51025666	AG	AG	51025665	5	1	102	1	0	0	0	0	0	0	1	0	4315	725	25	3		3	DCC	18	51025665	Splice_Site	DNP	CA	TCGA-38-4631-01A-01D-1753-08	593015	51025665	27051583	1371	100584											
WDR7	23335	broad.mit.edu	37	chr18	54444111	54444111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtttcttagtaaatgaaGgtatctctctcaacttctaa	5	9	4	1	rs113781282		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54444111	T	T	54444111	3	4	102	1	0	0	0	0	1	0	0	0	17447	1014	35	2	3009	2	WDR7	18	54444111	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3418446	54444111	23633137	1372	100585											
ZNF532	55205	broad.mit.edu	37	chr18	56606662	56606662	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgctaatgaccgtgtgtTtatttttctaacagatgtgt	9	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56606662	G	G	56606662	1	3	102	0	1	0	0	0	0	0	0	0	18099	1856	64	5		5	ZNF532	18	56606662	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	2162551	56606662	21470586	1373	100586											
PHLPP1	23239	broad.mit.edu	37	chr18	60563197	60563197	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactgtgtggagacccttagGctacaggctttaagaaaaat	10	7	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60563197	C	C	60563197	3	2	102	1	0	0	0	0	1	0	0	0	11949	1194	42	4	2419	4	PHLPP1	18	60563197	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3956535	60563197	17514051	1374	100587											
SERPINB5	5268	broad.mit.edu	37	chr18	61160146	61160146	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcagatgtagtttggaaGaataattctgctacttgtgt	9	4	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61160146	T	T	61160146	1	4	102	0	1	0	0	0	0	0	0	0	14217	957	33	3		3	SERPINB5	18	61160146	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	596949	61160146	16917102	1375	100588											
SERPINB12	89777	broad.mit.edu	37	chr18	61234152	61234152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtcactacgatcttggGtggagtttaatgccaaccac	10	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61234152	T	T	61234152	3	4	102	1	0	0	0	0	1	0	0	0	14212	1261	44	3	1152	3	SERPINB12	18	61234152	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	74006	61234152	16843096	1376	100589											
CDH7	1005	broad.mit.edu	37	chr18	63526277	63526277	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgaaaatgcccagccgGggcaggtaagagtcttcaga	13	9	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63526277	A	A	63526277	3	1	102	1	0	0	0	0	1	0	0	0	3145	1232	43	4	1519	4	CDH7	18	63526277	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2292125	63526277	14550971	1377	100590											
CDH19	28513	broad.mit.edu	37	chr18	64211979	64211979	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttaatataactattccttCttgagtttcatgattagtaa	4	5	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64211979	T	T	64211979	3	4	102	1	0	0	0	0	1	0	0	0	3134	922	32	4	1409	4	CDH19	18	64211979	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	685702	64211979	13865269	1378	100591											
DOK6	220164	broad.mit.edu	37	chr18	67344839	67344839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttcacttcctaaatacaGttttttgttgtttttttaaa	3	5	1	0	rs34692731		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67344839	A	A	67344839	1	1	102	0	1	0	0	0	0	0	0	0	4741	1044	36	4		4	DOK6	18	67344839	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3132860	67344839	10732409	1379	100592											
ZNF516	9658	broad.mit.edu	37	chr18	74154222	74154223	+	Missense_Mutation	DNP	CA	AG	AG													tgcttcttcatgtgcgccttCaggaaccaggtctggctgaa							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	74154223	AG	AG	74154222	3	1	102	1	0	0	0	0	1	0	0	0	18087	813	29	3	2723	3	ZNF516	18	74154222	Missense_Mutation	DNP	CA	TCGA-38-4631-01A-01D-1753-08	6809383	74154222	3923026	1380	100593											
ZNF236	7776	broad.mit.edu	37	chr18	74624286	74624286	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggaggacaacgaggaccaGagcaggcgctcttacaggta	14	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74624286	T	T	74624286	3	4	102	1	0	0	0	0	1	0	0	0	17915	933	33	3	2952	3	ZNF236	18	74624286	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	470064	74624286	3452962	1381	100594											
TMIGD2	126259	broad.mit.edu	37	chr19	4292732	4292732	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgggctggggcagggtcttGacgccaggtgcggctggcgg	21	10	1	1	rs144046862		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4292732	T	T	4292732	4	4	102	1	0	0	0	0	0	1	0	0	16354	1294	45	3	139	3	TMIGD2	19	4292732	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08		4292732	54836251	1382	100595											
DPP9	91039	broad.mit.edu	37	chr19	4688944	4688944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagctccacgggatgccgCtgcgccctttccactgggtg	13	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4688944	A	A	4688944	1	1	102	0	1	0	0	0	0	0	0	0	4773	812	28	3		3	DPP9	19	4688944	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	396212	4688944	54440039	1383	100596											
RANBP3	8498	broad.mit.edu	37	chr19	5933469	5933469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcgttggtggcttcaacCggaagccactgctcctttcc	10	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5933469	T	T	5933469	3	4	102	1	0	0	0	0	1	0	0	0	13137	652	23	4	1323	4	RANBP3	19	5933469	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1244525	5933469	53195514	1384	100597											
ZNF557	79230	broad.mit.edu	37	chr19	7083876	7083876	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaccccccaaaattttgtGgcttcaaacaaaaacacttg	4	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7083876	A	A	7083876	1	1	102	0	1	0	0	0	0	0	0	0	18115	1363	47	4		4	ZNF557	19	7083876	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	1150407	7083876	52045107	1385	100598											
ACTL9	284382	broad.mit.edu	37	chr19	8808271	8808271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctggaagtcggaggccaCgtagcaatagtggtgcttaa	13	8	1	0	rs142929347		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8808271	A	A	8808271	3	1	102	1	0	0	0	0	1	0	0	0	203	536	19	3	473	3	ACTL9	19	8808271	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1724395	8808271	50320712	1386	100599											
MUC16	94025	broad.mit.edu	37	chr19	9060278	9060278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcacttcagtggatatGtcttgtgacattgtggactg	12	6	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9060278	T	T	9060278	3	4	102	1	0	0	0	0	1	0	0	0	10067	1368	48	3	16683	3	MUC16	19	9060278	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	252007	9060278	50068705	1387	100600											
MUC16	94025	broad.mit.edu	37	chr19	9072943	9072943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaaccggtggtccccaCattggtaactactgtgttta	10	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9072943	A	A	9072943	3	1	102	1	0	0	0	0	1	0	0	0	10067	478	17	3	29348	3	MUC16	19	9072943	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	12665	9072943	50056040	1388	100601											
COL5A3	50509	broad.mit.edu	37	chr19	10091370	10091370	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcctggcccacatcgcccTaggacagagtgaatgagact	10	13	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10091370	C	C	10091370	5	2	102	1	0	0	0	0	0	0	1	0	3730	1536	53	5	2811	5	COL5A3	19	10091370	Splice_Site	SNP	T	TCGA-38-4631-01A-01D-1753-08	1018427	10091370	49037613	1389	100602											
KEAP1	9817	broad.mit.edu	37	chr19	10610293	10610293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagatggaggccgtgtaggcGaattcaatgaggcgctccat	15	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10610293	T	T	10610293	3	4	102	1	0	0	0	0	1	0	0	0	8211	1049	37	3	1477	3	KEAP1	19	10610293	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	518923	10610293	48518690	1390	100603											
SMARCA4	6597	broad.mit.edu	37	chr19	11138491	11138491	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accgagcctcgggtaaatttGagcttcttgatagaattctt	9	8	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11138491	T	T	11138491	4	4	102	1	0	0	0	0	0	1	0	0	14884	1291	45	3	3337	3	SMARCA4	19	11138491	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	528198	11138491	47990492	1391	100604											
ASNA1	439	broad.mit.edu	37	chr19	12858683	12858684	+	Intron	INS	-	T	T													cctgccctatattctctcccINStgactctggaagctttctag							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12858684	T	T	12858683	6	5	102	0	1	1	1	0	0	0	0	0	1051	696	24	0		0	ASNA1	19	12858683	Intron	INS	-	TCGA-38-4631-01A-01D-1753-08	1720192	12858683	46270300	1392	100605											
CALR3	125972	broad.mit.edu	37	chr19	16590162	16590162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccagcactttgggaggcCgaggcagatggatcacgaag	14	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16590162	A	A	16590162	1	1	102	0	1	0	0	0	0	0	0	0	2619	667	23	1		1	CALR3	19	16590162	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3731479	16590162	42538821	1393	100606											
MYO9B	4650	broad.mit.edu	37	chr19	17283219	17283219	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggacaataagtacttcctgGgcaccccggtcatggagcca	11	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17283219	C	C	17283219	3	2	102	1	0	0	0	0	1	0	0	0	10179	1232	43	4	1909	4	MYO9B	19	17283219	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	693057	17283219	41845764	1394	100607											
FAM129C	199786	broad.mit.edu	37	chr19	17641504	17641504	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtctgttttgccctccCcaagcaggtctcctgggcag	10	16	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17641504	T	T	17641504	1	4	102	0	1	0	0	0	0	0	0	0	5484	638	22	4		4	FAM129C	19	17641504	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	358285	17641504	41487479	1395	100608											
UNC13A	23025	broad.mit.edu	37	chr19	17758111	17758111	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggaccacttggacgtgccGtccagcacgctctgcttgac	12	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17758111	A	A	17758111	2	1	102	1	0	0	0	0	0	0	0	1	17110	1136	40	4		4	UNC13A	19	17758111	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	116607	17758111	41370872	1396	100609											
NCAN	1463	broad.mit.edu	37	chr19	19339042	19339042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatacaagcattgtgacGcccctcacgaccctggagca	10	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19339042	T	T	19339042	2	4	102	1	0	0	0	0	0	0	0	1	10299	1074	38	3		3	NCAN	19	19339042	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1580931	19339042	39789941	1397	100610											
ZNF708	7562	broad.mit.edu	37	chr19	21476272	21476272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtagggtttctctccaGtatgaattatcttatgtgta	8	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21476272	T	T	21476272	3	4	102	1	0	0	0	0	1	0	0	0	18240	1029	36	3	199	3	ZNF708	19	21476272	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2137230	21476272	37652711	1398	100611											
ZNF208	7757	broad.mit.edu	37	chr19	22156742	22156742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacatttgtagggtttctctCcagtatgaattaccttatgt	7	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22156742	A	A	22156742	3	1	102	1	0	0	0	0	1	0	0	0	17892	855	30	3	2752	3	ZNF208	19	22156742	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	680470	22156742	36972241	1399	100612											
ZNF676	163223	broad.mit.edu	37	chr19	22363512	22363512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcattcttcacatttgtagGgtttctctccagcatgaatt	7	10	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22363512	T	T	22363512	3	4	102	1	0	0	0	0	1	0	0	0	18210	1232	43	2	763	2	ZNF676	19	22363512	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	206770	22363512	36765471	1400	100613											
ZNF98	148198	broad.mit.edu	37	chr19	22586234	22586234	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctaacatcacattcctataTaaattctgctgtgcggtgtc	6	10	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22586234	A	A	22586234	3	1	102	1	0	0	0	0	1	0	0	0	18332	1403	49	5	1619	5	ZNF98	19	22586234	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	222722	22586234	36542749	1401	100614											
ZNF536	9745	broad.mit.edu	37	chr19	30935025	30935025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacaagctgggcaacctgGgcaaggggcgtgggcgtgtg	18	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935025	T	T	30935025	3	4	102	1	0	0	0	0	1	0	0	0	18101	1232	43	2	558	2	ZNF536	19	30935025	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	8348791	30935025	28193958	1402	100615											
WTIP	126374	broad.mit.edu	37	chr19	34986530	34986530	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggacaggagcgtggtGtgtgggagtgtacactcacg	18	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34986530	C	C	34986530	1	2	102	0	1	0	0	0	0	0	0	0	17537	1392	48	4		4	WTIP	19	34986530	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4051505	34986530	24142453	1403	100616											
CD22	933	broad.mit.edu	37	chr19	35829249	35829249	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacatcccaaagatcctcccCtggcacgctgggacttattc	7	16	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35829249	G	G	35829249	2	3	102	1	0	0	0	0	0	0	0	1	3015	668	24	4		4	CD22	19	35829249	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	842719	35829249	23299734	1404	100617											
ATP4A	495	broad.mit.edu	37	chr19	36051704	36051704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggatctggagtggctgGgtgctggggaacccacctgt	17	9	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36051704	T	T	36051704	1	4	102	0	1	0	0	0	0	0	0	0	1149	1247	43	2		2	ATP4A	19	36051704	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	222455	36051704	23077279	1405	100618											
UPK1A	11045	broad.mit.edu	37	chr19	36159571	36159571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacggtgagactccagggGttgggggatggggacactga	18	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36159571	T	T	36159571	1	4	102	0	1	0	0	0	0	0	0	0	17133	1276	44	3		3	UPK1A	19	36159571	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	107867	36159571	22969412	1406	100619											
LIN37	55957	broad.mit.edu	37	chr19	36245208	36245208	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacatgcagcgctggaaacGcatccgccagaggtgagcgt	13	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36245208	C	C	36245208	3	2	102	1	0	0	0	0	1	0	0	0	8880	1087	38	4	677	4	LIN37	19	36245208	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	85637	36245208	22883775	1407	100620											
ZFP14	57677	broad.mit.edu	37	chr19	36832249	36832249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaacgatctgatactcaGtaagaaaattgtgccttttg	8	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36832249	T	T	36832249	3	4	102	1	0	0	0	0	1	0	0	0	17765	1029	36	3	1126	3	ZFP14	19	36832249	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	587041	36832249	22296734	1408	100621											
ZNF461	92283	broad.mit.edu	37	chr19	37129923	37129923	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcccacattccttacactCatagggtttctcaccagtat	4	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37129923	A	A	37129923	4	1	102	1	0	0	0	0	0	1	0	0	18052	835	29	3	371	3	ZNF461	19	37129923	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	297674	37129923	21999060	1409	100622											
ZNF585B	92285	broad.mit.edu	37	chr19	37677515	37677515	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgaagttgtgacttggaAatgaaggatttgccacagtt	11	6	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37677515	T	T	37677515	2	4	102	1	0	0	0	0	0	0	0	1	18145	10	1	5		5	ZNF585B	19	37677515	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	547592	37677515	21451468	1410	100623											
RYR1	6261	broad.mit.edu	37	chr19	38943461	38943461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgaggtccctgtaggaGcctggacagcttcagcggga	16	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38943461	T	T	38943461	3	4	102	1	0	0	0	0	1	0	0	0	13879	971	34	3	1297	3	RYR1	19	38943461	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1265946	38943461	20185522	1411	100624											
PAPL	390928	broad.mit.edu	37	chr19	39597742	39597742	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtcagtgaggggcaggcCgaagtcacctgactgtacag	15	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39597742	T	T	39597742	1	4	102	0	1	0	0	0	0	0	0	0	11521	667	23	4		4	PAPL	19	39597742	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	654281	39597742	19531241	1412	100625											
SUPT5H	6829	broad.mit.edu	37	chr19	39955697	39955697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacattgctcaggtgcccgGggcggggtggcatgggggtc	20	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39955697	T	T	39955697	1	4	102	0	1	0	0	0	0	0	0	0	15517	1247	43	2		2	SUPT5H	19	39955697	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	357955	39955697	19173286	1413	100626											
PSMC4	5704	broad.mit.edu	37	chr19	40477036	40477036	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccagaagcctcctcagCcagggacttccgttgtcgtc	9	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40477036	A	A	40477036	1	1	102	0	1	0	0	0	0	0	0	0	12795	754	26	3		3	PSMC4	19	40477036	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	521339	40477036	18651947	1414	100627											
ZNF546	339327	broad.mit.edu	37	chr19	40504258	40504258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggaccctcctcttcacGggcctccaaatgactttctc	8	15	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40504258	T	T	40504258	3	4	102	1	0	0	0	0	1	0	0	0	18105	1116	39	1	27	1	ZNF546	19	40504258	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	27222	40504258	18624725	1415	100628											
MAP3K10	4294	broad.mit.edu	37	chr19	40704286	40704286	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttcccaccccacagtcctGatcctggaggccatcgagaa	8	16	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40704286	T	T	40704286	2	4	102	1	0	0	0	0	0	0	0	1	9336	1277	45	3		3	MAP3K10	19	40704286	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	200028	40704286	18424697	1416	100629											
ADCK4	79934	broad.mit.edu	37	chr19	41206254	41206254	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaggccctggcactggtcCagggggacccctccagccag	13	16	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41206254	A	A	41206254	2	1	102	1	0	0	0	0	0	0	0	1	290	581	21	2		2	ADCK4	19	41206254	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	501968	41206254	17922729	1417	100630											
CYP2A7	1549	broad.mit.edu	37	chr19	41454958	41454958	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccttctgtgcccacagGgaagcggatttgtcttggtg	14	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41454958	C	C	41454958	1	2	102	0	1	0	0	0	0	0	0	0	4196	1247	43	4		4	CYP2A7	19	41454958	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	248704	41454958	17674025	1418	100631											
CYP2B6	1555	broad.mit.edu	37	chr19	41522649	41522649	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatggccagccccgtggccCcagaagacatcgatctgaca	10	16	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41522649	T	T	41522649	3	4	102	1	0	0	0	0	1	0	0	0	4197	623	22	4	1427	4	CYP2B6	19	41522649	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	67691	41522649	17606334	1419	100632											
AXL	558	broad.mit.edu	37	chr19	41745506	41745506	+	Intron	DEL	C	-	-													actcgtgccacaccctcactCccttacccgtgccacaccct							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41745506	-	-	41745506	6	5	102	0	1	1	0	1	0	0	0	0	1243	870	30	0		0	AXL	19	41745506	Intron	DEL	C	TCGA-38-4631-01A-01D-1753-08	222857	41745506	17383477	1420	100633											
TGFB1	7040	broad.mit.edu	37	chr19	41847699	41847699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcccaagcacagcagCagccaggtgtccaacctgga	11	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41847699	A	A	41847699	1	1	102	0	1	0	0	0	0	0	0	0	15939	725	25	3		3	TGFB1	19	41847699	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	102193	41847699	17281284	1421	100634											
PSG6	5675	broad.mit.edu	37	chr19	43690702	43690702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctcaggctcatgggtgGggtcaggcccaggacacctc	13	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43690702	T	T	43690702	1	4	102	0	1	0	0	0	0	0	0	0	12765	1247	43	2		2	PSG6	19	43690702	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1843003	43690702	15438281	1422	100635											
PSG9	5678	broad.mit.edu	37	chr19	43771681	43771681	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgcttggctgagactgatCtcctcctgctgagtcccccc	10	15	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43771681	G	G	43771681	1	3	102	0	1	0	0	0	0	0	0	0	12768	928	32	4		4	PSG9	19	43771681	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	80979	43771681	15357302	1423	100636											
ZNF45	7596	broad.mit.edu	37	chr19	44417580	44417580	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atcctctgatgaaggaaagtCcttgtcaccctcatcatcag	7	12	5	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44417580	G	G	44417580	3	3	102	1	0	0	0	0	1	0	0	0	18048	855	30	4	44	4	ZNF45	19	44417580	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	645899	44417580	14711403	1424	100637											
ZNF155	7711	broad.mit.edu	37	chr19	44501580	44501580	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggagacgctacaagaggcGcttgaatctggatatacttt	12	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44501580	C	C	44501580	3	2	102	1	0	0	0	0	1	0	0	0	17862	1087	38	4	1585	4	ZNF155	19	44501580	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	84000	44501580	14627403	1425	100638											
ZNF226	7769	broad.mit.edu	37	chr19	44679240	44679240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttatatatgaagaaatGttggaaggactcatatatgc	8	4	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44679240	T	T	44679240	1	4	102	0	1	0	0	0	0	0	0	0	17906	1392	48	3		3	ZNF226	19	44679240	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	177660	44679240	14449743	1426	100639											
RSPH6A	81492	broad.mit.edu	37	chr19	46299364	46299364	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtagatgttctcaaacttTctggagaagcagtgagacac	10	7	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46299364	C	C	46299364	2	2	102	1	0	0	0	0	0	0	0	1	13818	1797	62	5		5	RSPH6A	19	46299364	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	1620124	46299364	12829619	1427	100640											
RSPH6A	81492	broad.mit.edu	37	chr19	46307977	46307977	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgtccacggccttctcctCgtcctcctcgccctcctcct	6	21	1	0	rs148871208	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46307977	A	A	46307977	4	1	102	1	0	0	0	0	0	1	0	0	13818	893	31	3	983	3	RSPH6A	19	46307977	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	8613	46307977	12821006	1428	100641											
FOXA3	3171	broad.mit.edu	37	chr19	46367796	46367796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcgaggtgtgtcctcggGgatggcggagcgggaagttg	22	7	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46367796	T	T	46367796	1	4	102	0	1	0	0	0	0	0	0	0	6049	1247	43	2		2	FOXA3	19	46367796	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	59819	46367796	12761187	1429	100642											
HIF3A	64344	broad.mit.edu	37	chr19	46815635	46815635	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgcctccccacctcaacAccagctccctgctccccaag	4	23	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46815635	C	C	46815635	1	2	102	0	1	0	0	0	0	0	0	0	7172	174	6	5		5	HIF3A	19	46815635	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	447839	46815635	12313348	1430	100643											
KPTN	11133	broad.mit.edu	37	chr19	47980043	47980043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccggtgggtgtggctcCaactgtcaggtcccacctgt	15	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47980043	A	A	47980043	1	1	102	0	1	0	0	0	0	0	0	0	8508	609	21	2		2	KPTN	19	47980043	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1164408	47980043	11148940	1431	100644											
CRX	1406	broad.mit.edu	37	chr19	48343139	48343139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcttggaattcaaggaccCcacgggcacctggaaattca	10	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48343139	A	A	48343139	3	1	102	1	0	0	0	0	1	0	0	0	3934	623	22	2	825	2	CRX	19	48343139	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	363096	48343139	10785844	1432	100645											
PLA2G4C	8605	broad.mit.edu	37	chr19	48581019	48581019	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggattcatggcaaagtagGatgcttaccttctgggggag	15	6	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48581019	A	A	48581019	1	1	102	0	1	0	0	0	0	0	0	0	12098	1189	41	4		4	PLA2G4C	19	48581019	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	237880	48581019	10547964	1433	100646											
GRIN2D	2906	broad.mit.edu	37	chr19	48919404	48919404	+	Frame_Shift_Del	DEL	C	-	-													tggcacggtgtccccctcggCcttcctcggtaatctggggc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48919404	-	-	48919404	7	5	102	1	0	1	0	1	0	0	0	0	6848	739	26	0	1749	0	GRIN2D	19	48919404	Frame_Shift_Del	DEL	C	TCGA-38-4631-01A-01D-1753-08	338385	48919404	10209579	1434	100647											
SULT2B1	6820	broad.mit.edu	37	chr19	49100182	49100182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctccggaaaggtgcgGgggttctggggttcagagcc	16	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49100182	T	T	49100182	1	4	102	0	1	0	0	0	0	0	0	0	15500	1247	43	2		2	SULT2B1	19	49100182	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	180778	49100182	10028801	1435	100648											
TULP2	7288	broad.mit.edu	37	chr19	49398567	49398567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgaggcaccagactcctGggttttagtggggacggagt	16	7	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49398567	T	T	49398567	1	4	102	0	1	0	0	0	0	0	0	0	16900	1363	47	2		2	TULP2	19	49398567	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	298385	49398567	9730416	1436	100649											
CGB	1082	broad.mit.edu	37	chr19	49527197	49527197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggtggaaggtgcccagGggccctgcagtcttacctgg	17	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49527197	T	T	49527197	1	4	102	0	1	0	0	0	0	0	0	0	3326	1247	43	2		2	CGB	19	49527197	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	128630	49527197	9601786	1437	100650											
SNRNP70	6625	broad.mit.edu	37	chr19	49610944	49610944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatccggcattcaggccgcGatgacacctcccgctacgat	9	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49610944	T	T	49610944	3	4	102	1	0	0	0	0	1	0	0	0	14972	1058	37	3	670	3	SNRNP70	19	49610944	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	83747	49610944	9518039	1438	100651											
PRMT1	3276	broad.mit.edu	37	chr19	50191343	50191343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagcccggctcatcgtcGcatagcctgcctgcacccgc	11	18	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50191343	T	T	50191343	1	4	102	0	1	0	0	0	0	0	0	0	12641	1102	38	3		3	PRMT1	19	50191343	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	580399	50191343	8937640	1439	100652											
SHANK1	50944	broad.mit.edu	37	chr19	51220046	51220046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaccaggtgccccactgCcctggccccgggtcccccgg	13	20	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51220046	A	A	51220046	3	1	102	1	0	0	0	0	1	0	0	0	14377	739	26	3	6446	3	SHANK1	19	51220046	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1028703	51220046	7908937	1440	100653											
KLK4	9622	broad.mit.edu	37	chr19	51411735	51411735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacgttcacgcactgcagCacggtaggcattctgcctgg	12	13	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51411735	A	A	51411735	2	1	102	1	0	0	0	0	0	0	0	1	8477	697	25	3		3	KLK4	19	51411735	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	191689	51411735	7717248	1441	100654											
KLK12	43849	broad.mit.edu	37	chr19	51532473	51532473	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaacaagagtggagctagGggaagtgatggaggagatat	17	4	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51532473	A	A	51532473	1	1	102	0	1	0	0	0	0	0	0	0	8471	1247	43	4		4	KLK12	19	51532473	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	120738	51532473	7596510	1442	100655											
SIGLEC8	27181	broad.mit.edu	37	chr19	51959013	51959013	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattataaatcatgctgctaTaaagacacatgcacatgtat	6	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51959013	C	C	51959013	1	2	102	0	1	0	0	0	0	0	0	0	14427	1421	49	5		5	SIGLEC8	19	51959013	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	426540	51959013	7169970	1443	100656											
SIGLEC5	8778	broad.mit.edu	37	chr19	52129430	52129430	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgggttagcgggttgtcccAtcccatgctaagatggtgaa	13	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52129430	T	T	52129430	1	4	102	0	1	0	0	0	0	0	0	0	14424	232	8	5		5	SIGLEC5	19	52129430	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	170417	52129430	6999553	1444	100657											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52149019	52149019	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttggggactcagctgtgtCcccagcaccactcacaggag	11	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52149019	G	G	52149019	1	3	102	0	1	0	0	0	0	0	0	0	14422	870	30	4		4	SIGLEC14	19	52149019	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	19589	52149019	6979964	1445	100658											
ZNF28	7576	broad.mit.edu	37	chr19	53313840	53313840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttccacgagcccgctacCgcgcccgaccaccaactaca	7	20	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53313840	A	A	53313840	1	1	102	0	1	0	0	0	0	0	0	0	17939	667	23	1		1	ZNF28	19	53313840	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1164821	53313840	5815143	1446	100659											
ZNF816A	125893	broad.mit.edu	37	chr19	53454041	53454041	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatgaagtctacgatggcaTctaagggatgacttctcact	10	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53454041	A	A	53454041	3	1	102	1	0	0	0	0	1	0	0	0	18306	1432	50	5	972	5	ZNF816A	19	53454041	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	140201	53454041	5674942	1447	100660											
ZNF415	55786	broad.mit.edu	37	chr19	53625894	53625894	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagagggagacagaatgatCcacacagaatctttctttac	8	8	2	5			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53625894	G	G	53625894	1	3	102	0	1	0	0	0	0	0	0	0	18019	870	30	4		4	ZNF415	19	53625894	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	171853	53625894	5503089	1448	100661											
VN1R4	317703	broad.mit.edu	37	chr19	53770944	53770944	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgatgtctgtcactgatGtttgtcttcagggctgggag	13	8	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53770944	T	T	53770944	1	4	102	0	1	0	0	0	0	0	0	0	17307	1392	48	3		3	VN1R4	19	53770944	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	145050	53770944	5358039	1449	100662											
ZNF845	91664	broad.mit.edu	37	chr19	53855101	53855101	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatgaatgcagcaggacCtttagtcggaagtcatccct	10	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53855101	G	G	53855101	2	3	102	1	0	0	0	0	0	0	0	1	18320	668	24	4		4	ZNF845	19	53855101	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	84157	53855101	5273882	1450	100663											
ZNF761	388561	broad.mit.edu	37	chr19	53952873	53952873	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtgatgctggagaattatAggaacctggtctcccctggg	13	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53952873	T	T	53952873	3	4	102	1	0	0	0	0	1	0	0	0	18265	411	15	5	130	5	ZNF761	19	53952873	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	97772	53952873	5176110	1451	100664											
PRKCG	5582	broad.mit.edu	37	chr19	54401818	54401818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacgtgtgctggcgctggGgggccggggtcctggcggcc	21	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54401818	T	T	54401818	3	4	102	1	0	0	0	0	1	0	0	0	12618	1232	43	2	1259	2	PRKCG	19	54401818	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	448945	54401818	4727165	1452	100665											
LILRB5	10990	broad.mit.edu	37	chr19	54758731	54758731	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaattcagcctggtgtctAtaagactggtactttgactt	10	7	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54758731	T	T	54758731	4	4	102	1	0	0	0	0	0	1	0	0	8866	456	16	5	685	5	LILRB5	19	54758731	Nonsense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	356913	54758731	4370252	1453	100666											
LAIR2	3904	broad.mit.edu	37	chr19	55014075	55014075	+	5'UTR	DEL	G	-	-													tggaaaccccacgggcaggaGgcccccggccagcacatcct							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55014075	-	-	55014075	6	5	102	0	1	1	0	1	0	0	0	0	8675	1015	35	0		0	LAIR2	19	55014075	5'UTR	DEL	G	TCGA-38-4631-01A-01D-1753-08	255344	55014075	4114908	1454	100667											
KIR3DL3	115653	broad.mit.edu	37	chr19	55237901	55237901	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccaatcatccaggcccagActgtatttggggtaaagggg	13	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55237901	T	T	55237901	1	4	102	0	1	0	0	0	0	0	0	0	8393	290	10	5		5	KIR3DL3	19	55237901	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	223826	55237901	3891082	1455	100668											
NCR1	9437	broad.mit.edu	37	chr19	55417619	55417619	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaatgggatcacggtgtgCctgggaggcaacaggtctca	17	8	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55417619	G	G	55417619	1	3	102	0	1	0	0	0	0	0	0	0	10332	754	26	4		4	NCR1	19	55417619	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	179718	55417619	3711364	1456	100669											
SAPS1	22870	broad.mit.edu	37	chr19	55748126	55748126	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttcctcgtcctcctcttCctcatcatcatcaaactgct	2	18	6	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55748126	A	A	55748126	4	1	102	1	0	0	0	0	0	1	0	0	13948	864	30	3	804	3	SAPS1	19	55748126	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	330507	55748126	3380857	1457	100670											
EPN1	29924	broad.mit.edu	37	chr19	56206432	56206432	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggggcagggacacttcgcCctttgcctgcacatgctgga	13	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56206432	T	T	56206432	1	4	102	0	1	0	0	0	0	0	0	0	5227	638	22	4		4	EPN1	19	56206432	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	458306	56206432	2922551	1458	100671											
NLRP11	204801	broad.mit.edu	37	chr19	56300796	56300796	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaacatgagctagagtcatGaccacctgtctccaaagatt	8	10	2	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56300796	T	T	56300796	1	4	102	0	1	0	0	0	0	0	0	0	10568	1305	45	3		3	NLRP11	19	56300796	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	94364	56300796	2828187	1459	100672											
NLRP11	204801	broad.mit.edu	37	chr19	56312887	56312887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctctatccaccaacaCccaggcattcccctcacatg	5	19	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56312887	A	A	56312887	1	1	102	0	1	0	0	0	0	0	0	0	10568	522	18	3		3	NLRP11	19	56312887	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	12091	56312887	2816096	1460	100673											
NLRP13	126204	broad.mit.edu	37	chr19	56424392	56424392	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagctgagatagaaaacaTaggagaacctttgctgaaag	12	6	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56424392	A	A	56424392	3	1	102	1	0	0	0	0	1	0	0	0	10570	1406	49	5	2366	5	NLRP13	19	56424392	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	111505	56424392	2704591	1461	100674											
NLRP5	126206	broad.mit.edu	37	chr19	56572782	56572782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtggaaatggcagtaccCtgtgcaaataaggaagctgc	13	8	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56572782	A	A	56572782	3	1	102	1	0	0	0	0	1	0	0	0	10575	681	24	2	3549	2	NLRP5	19	56572782	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	148390	56572782	2556201	1462	100675											
ZNF583	147949	broad.mit.edu	37	chr19	56934258	56934258	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttcttgatatcttttAgattgggagtatgtatttaa	8	2	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56934258	T	T	56934258	5	4	102	1	0	0	0	0	0	0	1	0	18142	434	15	5	245	5	ZNF583	19	56934258	Splice_Site	SNP	A	TCGA-38-4631-01A-01D-1753-08	361476	56934258	2194725	1463	100676											
ZFP28	140612	broad.mit.edu	37	chr19	57064966	57064966	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgaattcaccaattagTgaattaattcactagttttc	5	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57064966	A	A	57064966	1	1	102	0	1	0	0	0	0	0	0	0	17768	1711	59	5		5	ZFP28	19	57064966	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	130708	57064966	2064017	1464	100677											
USP29	57663	broad.mit.edu	37	chr19	57640595	57640595	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagacaaatgaggacattctGaaggaagataaccctgtacc	9	9	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57640595	T	T	57640595	2	4	102	1	0	0	0	0	0	0	0	1	17186	1277	45	3		3	USP29	19	57640595	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	575629	57640595	1488388	1465	100678											
ZNF543	125919	broad.mit.edu	37	chr19	57839611	57839611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctataagtgcatggagtgtGggaaggcttttaaccgcagg	14	7	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57839611	T	T	57839611	3	4	102	1	0	0	0	0	1	0	0	0	18103	1348	47	2	795	2	ZNF543	19	57839611	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	199016	57839611	1289372	1466	100679											
ZNF548	147694	broad.mit.edu	37	chr19	57908275	57908275	+	Intron	DEL	G	-	-													tgagaatatgggcccagggtGgtaggggagatggaaacaca							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57908275	-	-	57908275	6	5	102	0	1	1	0	1	0	0	0	0	18107	1363	47	0		0	ZNF548	19	57908275	Intron	DEL	G	TCGA-38-4631-01A-01D-1753-08	68664	57908275	1220708	1467	100680											
ZIK1	284307	broad.mit.edu	37	chr19	58096301	58096301	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatggtcacctgcctttcatGatctttggctttccacaggt	8	11	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58096301	T	T	58096301	1	4	102	0	1	0	0	0	0	0	0	0	17809	1305	45	3		3	ZIK1	19	58096301	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	188026	58096301	1032682	1468	100681											
ZNF606	80095	broad.mit.edu	37	chr19	58490843	58490843	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacgtcccacattcattgTagtcatagggtttctctgca	8	10	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58490843	A	A	58490843	3	1	102	1	0	0	0	0	1	0	0	0	18159	1638	57	5	1177	5	ZNF606	19	58490843	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	394542	58490843	638140	1469	100682											
ZNF135	7694	broad.mit.edu	37	chr19	58572990	58572990	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtagtgggcttcagccagGaggagtgggggcagctgaag	20	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58572990	T	T	58572990	4	4	102	1	0	0	0	0	0	1	0	0	17851	1175	41	3	155	3	ZNF135	19	58572990	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	82147	58572990	555993	1470	100683											
ZNF274	10782	broad.mit.edu	37	chr19	58724291	58724291	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagccatctcccagcacCtgaggactcacactggcgct	9	17	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58724291	T	T	58724291	2	4	102	1	0	0	0	0	0	0	0	1	17935	680	24	4		4	ZNF274	19	58724291	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	151301	58724291	404692	1471	100684											
A1BG	1	broad.mit.edu	37	chr19	58864391	58864391	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggtgtcacccgtcagcagGaactggtgcttgatggcagg	16	9	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58864391	C	C	58864391	3	2	102	1	0	0	0	0	1	0	0	0	1	1165	41	4	1268	4	A1BG	19	58864391	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	140100	58864391	264592	1472	100685											
ZNF324B	388569	broad.mit.edu	37	chr19	58962930	58962930	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaggctgtgcgcaagcGtctgcgcgcgtattggggca	16	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58962930	A	A	58962930	1	1	102	0	1	0	0	0	0	0	0	0	17971	1160	40	4		4	ZNF324B	19	58962930	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	98539	58962930	166053	1473	100686											
C20orf96	140680	broad.mit.edu	37	chr20	264795	264795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaggttcccgggagtgCaccattaatgagaggagggc	16	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	264795	A	A	264795	1	1	102	0	1	0	0	0	0	0	0	0	2144	725	25	3		3	C20orf96	20	264795	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08		264795	62760725	1474	100687											
PSMF1	9491	broad.mit.edu	37	chr20	1143718	1143718	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtttgtgatcccacatGtatcaggtgcctggctgctc	12	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1143718	A	A	1143718	1	1	102	0	1	0	0	0	0	0	0	0	12816	1392	48	4		4	PSMF1	20	1143718	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	878923	1143718	61881802	1475	100688											
SIRPG	55423	broad.mit.edu	37	chr20	1629708	1629708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtactcaccacccaaagcCatctcagtgcctggtccaga	7	15	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1629708	A	A	1629708	3	1	102	1	0	0	0	0	1	0	0	0	14449	594	21	2	759	2	SIRPG	20	1629708	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	485990	1629708	61395812	1476	100689											
SIRPA	140885	broad.mit.edu	37	chr20	1915473	1915473	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacatcaaccggaattgcaGatctggttctaaattaagac	7	9	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1915473	T	T	1915473	1	4	102	0	1	0	0	0	0	0	0	0	14445	957	33	3		3	SIRPA	20	1915473	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	285765	1915473	61110047	1477	100690											
FASTKD5	60493	broad.mit.edu	37	chr20	3127960	3127960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacctctaagtcagaagatCgggtatgaggcaaaatcata	11	7	3	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3127960	A	A	3127960	3	1	102	1	0	0	0	0	1	0	0	0	5745	884	31	3	541	3	FASTKD5	20	3127960	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1212487	3127960	59897560	1478	100691											
FASTKD5	60493	broad.mit.edu	37	chr20	3129681	3129681	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactgcaaaatgctcggtaTcttacaagttttaatgactt	8	7	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3129681	C	C	3129681	2	2	102	1	0	0	0	0	0	0	0	1	5745	1432	50	5		5	FASTKD5	20	3129681	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	1721	3129681	59895839	1479	100692											
ADRA1D	146	broad.mit.edu	37	chr20	4202212	4202212	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgtagtcggccaattcGtaggcctggcaggtggcgcc	15	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4202212	C	C	4202212	4	2	102	1	0	0	0	0	0	1	0	0	336	1140	40	4	45	4	ADRA1D	20	4202212	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1072531	4202212	58823308	1480	100693											
C20orf103	24141	broad.mit.edu	37	chr20	9498890	9498890	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgaaggtaagttgttggggGatggaggggaagaagaccta	19	2	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9498890	A	A	9498890	1	1	102	0	1	0	0	0	0	0	0	0	2097	1189	41	4		4	C20orf103	20	9498890	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	5296678	9498890	53526630	1481	100694											
TASP1	55617	broad.mit.edu	37	chr20	13610571	13610571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcttccaagccatccaCaaagcttacctgcatgcacc	6	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13610571	A	A	13610571	1	1	102	0	1	0	0	0	0	0	0	0	15708	493	17	3		3	TASP1	20	13610571	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4111681	13610571	49414949	1482	100695											
SEL1L2	80343	broad.mit.edu	37	chr20	13858199	13858199	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatggcatttgcactcccGgcctttgctgcctttaagaa	9	13	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13858199	T	T	13858199	2	4	102	1	0	0	0	0	0	0	0	1	14124	1103	39	1		1	SEL1L2	20	13858199	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	247628	13858199	49167321	1483	100696											
SNX5	27131	broad.mit.edu	37	chr20	17932182	17932182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcatcagcacttttcaCcacacttttgaagaagccac	5	13	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17932182	A	A	17932182	3	1	102	1	0	0	0	0	1	0	0	0	15019	507	18	3	675	3	SNX5	20	17932182	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4073983	17932182	45093338	1484	100697											
ZNF133	7692	broad.mit.edu	37	chr20	18297168	18297168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggcagtgtggactggGctttggcaataagtcagctc	15	8	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18297168	T	T	18297168	3	4	102	1	0	0	0	0	1	0	0	0	17849	1203	42	3	1680	3	ZNF133	20	18297168	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	364986	18297168	44728352	1485	100698											
RALGAPA2	57186	broad.mit.edu	37	chr20	20582347	20582347	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgctttttggcgaacaaTatttcttgccttttccactc	6	10	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20582347	C	C	20582347	3	2	102	1	0	0	0	0	1	0	0	0	13122	1406	49	5	3535	5	RALGAPA2	20	20582347	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2285179	20582347	42443173	1486	100699											
XRN2	22803	broad.mit.edu	37	chr20	21335370	21335370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttcgagcaatgataaGttggaatttgggtgatcctg	11	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21335370	T	T	21335370	1	4	102	0	1	0	0	0	0	0	0	0	17587	1044	36	3		3	XRN2	20	21335370	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	753023	21335370	41690150	1487	100700											
NINL	22981	broad.mit.edu	37	chr20	25477488	25477488	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaccccactgctggcctgAcccgccatgccaggtggctc	13	17	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25477488	C	C	25477488	1	2	102	0	1	0	0	0	0	0	0	0	10515	290	10	5		5	NINL	20	25477488	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	4142118	25477488	37548032	1488	100701											
DEFB115	245929	broad.mit.edu	37	chr20	29845623	29845623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcctaaccacagaatcaCtggaaaattgaacatgtgta	9	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29845623	A	A	29845623	1	1	102	0	1	0	0	0	0	0	0	0	4443	580	20	3		3	DEFB115	20	29845623	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	4368135	29845623	33179897	1489	100702											
DEFB116	245930	broad.mit.edu	37	chr20	29891335	29891335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgatttaaaggaacacgcCctaagactattaagggcaca	8	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29891335	A	A	29891335	1	1	102	0	1	0	0	0	0	0	0	0	4444	638	22	2		2	DEFB116	20	29891335	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	45712	29891335	33134185	1490	100703											
DEFB119	245932	broad.mit.edu	37	chr20	29976907	29976907	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagccaaggattccatgaAttgttactggttggattgtt	10	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29976907	T	T	29976907	1	4	102	0	1	0	0	0	0	0	0	0	4446	101	4	5		5	DEFB119	20	29976907	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	85572	29976907	33048613	1491	100704											
DNMT3B	1789	broad.mit.edu	37	chr20	31383029	31383029	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtgttaaggatcctgggTgcaaggggttttgaatgagc	15	5	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31383029	A	A	31383029	1	1	102	0	1	0	0	0	0	0	0	0	4717	1711	59	5		5	DNMT3B	20	31383029	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	1406122	31383029	31642491	1492	100705											
DNMT3B	1789	broad.mit.edu	37	chr20	31389238	31389238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacggttcctggaggtgagGgaatctggggacctgattgt	16	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31389238	A	A	31389238	1	1	102	0	1	0	0	0	0	0	0	0	4717	1247	43	4		4	DNMT3B	20	31389238	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	6209	31389238	31636282	1493	100706											
BPIL3	128859	broad.mit.edu	37	chr20	31627309	31627309	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcaaggctccaatgtccCtctttctcctagaagtggtg	11	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31627309	T	T	31627309	3	4	102	1	0	0	0	0	1	0	0	0	1502	681	24	4	1095	4	BPIL3	20	31627309	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	238071	31627309	31398211	1494	100707											
C20orf70	140683	broad.mit.edu	37	chr20	31763459	31763459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctaagaggaggcctagtGgtgaaagtgttcaggctctg	14	7	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31763459	T	T	31763459	1	4	102	0	1	0	0	0	0	0	0	0	2138	1363	47	2		2	C20orf70	20	31763459	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	136150	31763459	31262061	1495	100708											
DLGAP4	22839	broad.mit.edu	37	chr20	35128633	35128633	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctcacagtatgtcctccCgacgggacacagactcggat	9	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35128633	T	T	35128633	4	4	102	1	0	0	0	0	0	1	0	0	4602	644	23	4	2280	4	DLGAP4	20	35128633	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	3365174	35128633	27896887	1496	100709											
DSN1	79980	broad.mit.edu	37	chr20	35390863	35390863	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggggaactgctcttaCccatttgaatcttcaaaaca	7	10	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35390863	T	T	35390863	5	4	102	1	0	0	0	0	0	0	1	0	4820	521	18	4	503	4	DSN1	20	35390863	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	262230	35390863	27634657	1497	100710											
MYBL2	4605	broad.mit.edu	37	chr20	42331601	42331601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacacctagtgttcagtGctggggcaagggtgagcaaa	14	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42331601	T	T	42331601	1	4	102	0	1	0	0	0	0	0	0	0	10104	1334	46	3		3	MYBL2	20	42331601	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	6940738	42331601	20693919	1498	100711											
TOX2	84969	broad.mit.edu	37	chr20	42680226	42680226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctgaagctgccctcctGtcggcagggaaggggtcctg	16	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42680226	T	T	42680226	1	4	102	0	1	0	0	0	0	0	0	0	16502	1392	48	3		3	TOX2	20	42680226	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	348625	42680226	20345294	1499	100712											
JPH2	57158	broad.mit.edu	37	chr20	42788285	42788285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcaatctcggccttctggCgcgcgatagcagcggcgcgc	15	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42788285	A	A	42788285	3	1	102	1	0	0	0	0	1	0	0	0	8031	768	27	3	964	3	JPH2	20	42788285	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	108059	42788285	20237235	1500	100713											
HNF4A	3172	broad.mit.edu	37	chr20	43034844	43034844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcttcttccggaggagcGtgcggaagaaccacatgtac	14	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43034844	T	T	43034844	3	4	102	1	0	0	0	0	1	0	0	0	7320	1145	40	3	321	3	HNF4A	20	43034844	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	246559	43034844	19990676	1501	100714											
SPINLW1	57119	broad.mit.edu	37	chr20	44170794	44170794	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttatccaatcagggaaagcCtgcagagaacgtaggacaga	11	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44170794	T	T	44170794	1	4	102	0	1	0	0	0	0	0	0	0	15185	695	24	4		4	SPINLW1	20	44170794	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1135950	44170794	18854726	1502	100715											
SPINLW1	57119	broad.mit.edu	37	chr20	44171545	44171545	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaaactcagtgtgcccActccagaaataaacagttgt	8	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44171545	T	T	44171545	1	4	102	0	1	0	0	0	0	0	0	0	15185	174	6	5		5	SPINLW1	20	44171545	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	751	44171545	18853975	1503	100716											
SLC12A5	57468	broad.mit.edu	37	chr20	44680367	44680367	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagggcttctgccaggtggtGatctcctccaacttgcgtga	12	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44680367	T	T	44680367	2	4	102	1	0	0	0	0	0	0	0	1	14499	1277	45	3		3	SLC12A5	20	44680367	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	508822	44680367	18345153	1504	100717											
EYA2	2139	broad.mit.edu	37	chr20	45700901	45700901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcaccaggtagacatgGctccctcccgattctttcct	9	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45700901	T	T	45700901	1	4	102	0	1	0	0	0	0	0	0	0	5372	1218	42	3		3	EYA2	20	45700901	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1020534	45700901	17324619	1505	100718											
SLC9A8	23315	broad.mit.edu	37	chr20	48472153	48472153	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaacagacttttttcatGtgacagaactaaaggtcctt	8	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48472153	A	A	48472153	1	1	102	0	1	0	0	0	0	0	0	0	14834	1392	48	4		4	SLC9A8	20	48472153	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2771252	48472153	14553367	1506	100719											
ATP9A	10079	broad.mit.edu	37	chr20	50346457	50346457	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcttctcggggtgcccCagccagacagtgcggggcct	13	15	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50346457	A	A	50346457	2	1	102	1	0	0	0	0	0	0	0	1	1202	581	21	2		2	ATP9A	20	50346457	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1874304	50346457	12679063	1507	100720											
TSHZ2	128553	broad.mit.edu	37	chr20	51870965	51870965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaccccggctaagaaacGcgtttttgatgtcaatcggc	11	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51870965	T	T	51870965	3	4	102	1	0	0	0	0	1	0	0	0	16749	1087	38	3	974	3	TSHZ2	20	51870965	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1524508	51870965	11154555	1508	100721											
ZNF217	7764	broad.mit.edu	37	chr20	52193350	52193350	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgggtggtactgccatcCggaggaggagtaacatccgc	14	9	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52193350	A	A	52193350	2	1	102	1	0	0	0	0	0	0	0	1	17898	639	23	1		1	ZNF217	20	52193350	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	322385	52193350	10832170	1509	100722											
DOK5	55816	broad.mit.edu	37	chr20	53259952	53259952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcagtcaggccactttcGgccccagtgttgctgacgca	10	15	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53259952	A	A	53259952	1	1	102	0	1	0	0	0	0	0	0	0	4740	1131	39	4		4	DOK5	20	53259952	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1066602	53259952	9765568	1510	100723											
CBLN4	140689	broad.mit.edu	37	chr20	54578972	54578972	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgcgcgtcttgttgctcaTctcggatggctcgtggttgg	15	9	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54578972	C	C	54578972	3	2	102	1	0	0	0	0	1	0	0	0	2733	1435	50	5	361	5	CBLN4	20	54578972	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	1319020	54578972	8446548	1511	100724											
CASS4	57091	broad.mit.edu	37	chr20	55012264	55012264	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaactgccctgactgctcTgacgagctggctttcagcag	11	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55012264	A	A	55012264	2	1	102	1	0	0	0	0	0	0	0	1	2709	1567	55	5		5	CASS4	20	55012264	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	433292	55012264	8013256	1512	100725											
CTCFL	140690	broad.mit.edu	37	chr20	56087660	56087660	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaatacctgcttgcaggcAtaactgcagtgtttgcactt	8	10	0	0	rs150326376		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56087660	T	T	56087660	4	4	102	1	0	0	0	0	0	1	0	0	4035	224	8	5	528	5	CTCFL	20	56087660	Nonsense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1075396	56087660	6937860	1513	100726											
GNAS	2778	broad.mit.edu	37	chr20	57485075	57485075	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgctgagaaagtccttgcTgggaaatcgaagattgagga	13	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57485075	C	C	57485075	2	2	102	1	0	0	0	0	0	0	0	1	6574	1567	55	5		5	GNAS	20	57485075	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	1397415	57485075	5540445	1514	100727											
TH1L	51497	broad.mit.edu	37	chr20	57565975	57565975	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcatcaagaggtcatgacGccagtcagatcacactagcc	8	13	5	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57565975	C	C	57565975	3	2	102	1	0	0	0	0	1	0	0	0	15962	1087	38	4	856	4	TH1L	20	57565975	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	80900	57565975	5459545	1515	100728											
ZNF831	128611	broad.mit.edu	37	chr20	57781733	57781733	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactaagcatcctgggaagcAttttgtgaccacctcattta	8	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57781733	G	G	57781733	1	3	102	0	1	0	0	0	0	0	0	0	18314	232	8	5		5	ZNF831	20	57781733	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	215758	57781733	5243787	1516	100729											
PHACTR3	116154	broad.mit.edu	37	chr20	58342234	58342234	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taactctctgctttgcctttGaaccagccaagatgccttct	6	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58342234	C	C	58342234	1	2	102	0	1	0	0	0	0	0	0	0	11906	1305	45	4		4	PHACTR3	20	58342234	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	560501	58342234	4683286	1517	100730											
GTPBP5	26164	broad.mit.edu	37	chr20	60774021	60774021	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagctttgcgactcaccttTttcccatcagtacactgctg	6	14	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60774021	G	G	60774021	1	3	102	0	1	0	0	0	0	0	0	0	6948	1856	64	5		5	GTPBP5	20	60774021	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	2431787	60774021	2251499	1518	100731											
DIDO1	11083	broad.mit.edu	37	chr20	61512318	61512318	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctgcagggcgccgcaagGcggtgtgggcagcagcaccc	19	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61512318	A	A	61512318	3	1	102	1	0	0	0	0	1	0	0	0	4562	1203	42	4	1736	4	DIDO1	20	61512318	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	738297	61512318	1513202	1519	100732											
CHRNA4	1137	broad.mit.edu	37	chr20	61978290	61978290	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctcaggaccccggcgcCgccggcaacagcttctccac	10	20	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61978290	T	T	61978290	1	4	102	0	1	0	0	0	0	0	0	0	3416	667	23	4		4	CHRNA4	20	61978290	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	465972	61978290	1047230	1520	100733											
PRIC285	85441	broad.mit.edu	37	chr20	62198149	62198149	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccggagagctccccctcCcccagcaggggtgcggtcgg	15	17	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62198149	T	T	62198149	1	4	102	0	1	0	0	0	0	0	0	0	12591	638	22	4		4	PRIC285	20	62198149	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	219859	62198149	827371	1521	100734											
OPRL1	4987	broad.mit.edu	37	chr20	62730101	62730101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgtgcgcagcattgccaaGgacgtggccctggcctgcaa	14	14	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62730101	T	T	62730101	3	4	102	1	0	0	0	0	1	0	0	0	10980	991	35	2	1072	2	OPRL1	20	62730101	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	531952	62730101	295419	1522	100735											
TPTE	7179	broad.mit.edu	37	chr21	10916476	10916476	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatatgcaacatatctcttCtgaaaagcaacagaaatctt	4	8	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10916476	A	A	10916476	5	1	102	1	0	0	0	0	0	0	1	0	16554	927	32	3	505	3	TPTE	21	10916476	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08		10916476	37213419	1523	100736											
TPTE	7179	broad.mit.edu	37	chr21	10996093	10996093	+	RNA	DEL	C	-	-													atcacagatcttttggttttCccttgcccagttcgacttct							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10996093	-	-	10996093	6	5	102	0	1	1	0	1	0	0	0	0	16554	870	30	0		0	TPTE	21	10996093	RNA	DEL	C	TCGA-38-4631-01A-01D-1753-08	79617	10996093	37133802	1524	100737											
BAGE2	85319	broad.mit.edu	37	chr21	11058127	11058127	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttcagtaaacacattggTtgaagtttaaaagtctatgc	7	5	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11058127	G	G	11058127	1	3	102	0	1	0	0	0	0	0	0	0	1297	1740	60	5		5	BAGE2	21	11058127	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	62034	11058127	37071768	1525	100738											
POTED	317754	broad.mit.edu	37	chr21	14983108	14983108	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaggaggcaggacatgggGggatgatggggacataccct	20	6	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14983108	A	A	14983108	1	1	102	0	1	0	0	0	0	0	0	0	12359	1247	43	4		4	POTED	21	14983108	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3924981	14983108	33146787	1526	100739											
HSPA13	6782	broad.mit.edu	37	chr21	15753637	15753637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgaatctgccagctctaCgctttcatatcccacatata	4	12	3	1	rs140867763		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15753637	A	A	15753637	3	1	102	1	0	0	0	0	1	0	0	0	7475	536	19	3	1178	3	HSPA13	21	15753637	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	770529	15753637	32376258	1527	100740											
CHODL	140578	broad.mit.edu	37	chr21	19629016	19629016	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaaaacctgacaaaaccCgggacagggatttctgatgg	11	9	1	2	rs61739664	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19629016	A	A	19629016	2	1	102	1	0	0	0	0	0	0	0	1	3395	639	23	1		1	CHODL	21	19629016	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	3875379	19629016	28500879	1528	100741											
MRPL39	54148	broad.mit.edu	37	chr21	26960133	26960133	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactatcatgaagaaataagCaaacttgaaaataagtttaa	5	4	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26960133	G	G	26960133	1	3	102	0	1	0	0	0	0	0	0	0	9896	725	25	4		4	MRPL39	21	26960133	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	7331117	26960133	21169762	1529	100742											
ADAMTS1	9510	broad.mit.edu	37	chr21	28213287	28213287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcgtgaaaggttggatgcCatctagagagagtagctgga	15	5	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28213287	A	A	28213287	1	1	102	0	1	0	0	0	0	0	0	0	255	609	21	2		2	ADAMTS1	21	28213287	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1253154	28213287	19916608	1530	100743											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296446	28296446	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccttttgctaacttccGgtttccatcctggcactgca	6	14	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28296446	T	T	28296446	2	4	102	1	0	0	0	0	0	0	0	1	269	1115	39	1		1	ADAMTS5	21	28296446	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	83159	28296446	19833449	1531	100744											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31655173	31655173	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaacagaagaggtcactggGatataacagtgagttctgta	12	5	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31655173	T	T	31655173	2	4	102	1	0	0	0	0	0	0	0	1	8614	1164	41	3		3	KRTAP24-1	21	31655173	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3358727	31655173	16474722	1532	100745											
KRTAP26-1	388818	broad.mit.edu	37	chr21	31691968	31691968	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatgggctggtaactattgAgcagcggcctcagtggacga	14	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31691968	T	T	31691968	3	4	102	1	0	0	0	0	1	0	0	0	8615	304	11	5	250	5	KRTAP26-1	21	31691968	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	36795	31691968	16437927	1533	100746											
KRTAP19-4	337971	broad.mit.edu	37	chr21	31869471	31869471	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggctgctcaaggcaagatCctaagtgtgaatggcagcac	12	9	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31869471	T	T	31869471	1	4	102	0	1	0	0	0	0	0	0	0	8602	870	30	4		4	KRTAP19-4	21	31869471	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	177503	31869471	16260424	1534	100747											
C21orf45	54069	broad.mit.edu	37	chr21	33651133	33651133	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctccagctgcgccctctCcatgtcggccaccgacgcgt	9	20	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33651133	A	A	33651133	4	1	102	1	0	0	0	0	0	1	0	0	2148	864	30	3	528	3	C21orf45	21	33651133	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1781662	33651133	14478762	1535	100748											
GCFC1	94104	broad.mit.edu	37	chr21	34117882	34117882	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcagagaacaggagattTacctgttagtttaggaagaa	10	4	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34117882	C	C	34117882	1	2	102	0	1	0	0	0	0	0	0	0	6351	1769	61	5		5	GCFC1	21	34117882	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	466749	34117882	14012013	1536	100749											
GCFC1	94104	broad.mit.edu	37	chr21	34131591	34131591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtccaaccttaggaacaCaaaaggataaatataacaca	7	8	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34131591	A	A	34131591	1	1	102	0	1	0	0	0	0	0	0	0	6351	493	17	3		3	GCFC1	21	34131591	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	13709	34131591	13998304	1537	100750											
CHAF1B	8208	broad.mit.edu	37	chr21	37775236	37775236	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcagcttatcagctcagtGaatgctgattagagtggggg	14	7	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37775236	A	A	37775236	1	1	102	0	1	0	0	0	0	0	0	0	3343	1305	45	4		4	CHAF1B	21	37775236	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3643645	37775236	10354659	1538	100751											
HLCS	3141	broad.mit.edu	37	chr21	38308736	38308736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagatcaccaaatccatgCtgccctgagtacctggcaaa	7	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38308736	A	A	38308736	1	1	102	0	1	0	0	0	0	0	0	0	7280	812	28	3		3	HLCS	21	38308736	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	533500	38308736	9821159	1539	100752											
PCP4	5121	broad.mit.edu	37	chr21	41239372	41239372	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccggtggagcagcgacccCtgagcagtgttctctgtgct	13	12	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41239372	A	A	41239372	1	1	102	1	0	0	0	0	0	0	0	0	11692	696	24	2		2	PCP4	21	41239372	Translation_Start_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	2930636	41239372	6890523	1540	100753											
DSCAM	1826	broad.mit.edu	37	chr21	42080435	42080435	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaaggattttcagctgtGcaataataagtattatcatg	8	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42080435	T	T	42080435	4	4	102	1	0	0	0	0	0	1	0	0	4808	1311	46	3	5860	3	DSCAM	21	42080435	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	841063	42080435	6049460	1541	100754											
UMODL1	89766	broad.mit.edu	37	chr21	43541422	43541422	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaaagggcttcttgtccCtctgaggtcatatttttatg	10	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43541422	T	T	43541422	1	4	102	0	1	0	0	0	0	0	0	0	17106	696	24	4		4	UMODL1	21	43541422	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1460987	43541422	4588473	1542	100755											
UBASH3A	53347	broad.mit.edu	37	chr21	43863444	43863444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgtttcccctgtccgccCtcatgccggccgagagctac	10	19	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43863444	A	A	43863444	3	1	102	1	0	0	0	0	1	0	0	0	16965	681	24	2	1704	2	UBASH3A	21	43863444	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	322022	43863444	4266451	1543	100756											
RSPH1	89765	broad.mit.edu	37	chr21	43897650	43897650	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacaagttttgaaagacaGgttttggcttgtgtttcagc	12	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43897650	A	A	43897650	1	1	102	0	1	0	0	0	0	0	0	0	13813	1015	35	4		4	RSPH1	21	43897650	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	34206	43897650	4232245	1544	100757											
PDE9A	5152	broad.mit.edu	37	chr21	44152042	44152042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggctgctaccaggaagGccagcgcatccctccaggta	12	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44152042	T	T	44152042	3	4	102	1	0	0	0	0	1	0	0	0	11749	1203	42	3	523	3	PDE9A	21	44152042	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	254392	44152042	3977853	1545	100758											
TRAPPC10	7109	broad.mit.edu	37	chr21	45522796	45522796	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtatctccccctgcccgacGtcaggctgttcaagtacctc	9	16	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45522796	A	A	45522796	3	1	102	1	0	0	0	0	1	0	0	0	16581	1145	40	4	3570	4	TRAPPC10	21	45522796	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1370754	45522796	2607099	1546	100759											
AIRE	326	broad.mit.edu	37	chr21	45713743	45713743	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggtgtactcactgcgcCgctgccttccactggcgctg	12	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45713743	G	G	45713743	2	3	102	1	0	0	0	0	0	0	0	1	437	639	23	4		4	AIRE	21	45713743	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	190947	45713743	2416152	1547	100760											
ITGB2	3689	broad.mit.edu	37	chr21	46330268	46330268	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctgctgaccttgaacttCgtgcactcctgagagaggac	11	12	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46330268	T	T	46330268	2	4	102	1	0	0	0	0	0	0	0	1	7964	871	31	4		4	ITGB2	21	46330268	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	616525	46330268	1799627	1548	100761											
SLC19A1	6573	broad.mit.edu	37	chr21	46945968	46945968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcccaccagcccatgaccCgcccggcagccacggggtcc	11	21	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46945968	A	A	46945968	1	1	102	0	1	0	0	0	0	0	0	0	14541	667	23	1		1	SLC19A1	21	46945968	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	615700	46945968	1183927	1549	100762											
LSS	4047	broad.mit.edu	37	chr21	47639344	47639344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgtcactctactcccCgggacagcagcagcgaccca	9	18	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47639344	A	A	47639344	1	1	102	0	1	0	0	0	0	0	0	0	9152	667	23	1		1	LSS	21	47639344	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	693376	47639344	490551	1550	100763											
PRMT2	3275	broad.mit.edu	37	chr21	48083500	48083500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaagattctgtcctgtgGgtgccggtcctcagggagac	14	9	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48083500	T	T	48083500	1	4	102	0	1	0	0	0	0	0	0	0	12643	1247	43	2		2	PRMT2	21	48083500	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	444156	48083500	46395	1551	100764											
CCT8L2	150160	broad.mit.edu	37	chr22	17072821	17072821	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtccccccgggcagcGcgcacaccccaacacgctca	9	21	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17072821	C	C	17072821	3	2	102	1	0	0	0	0	1	0	0	0	2991	1087	38	4	1057	4	CCT8L2	22	17072821	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08		17072821	34231745	1552	100765											
CCT8L2	150160	broad.mit.edu	37	chr22	17073466	17073466	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagagaggagaggccacCgtgggttgcagagatgctct	17	8	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17073466	T	T	17073466	1	4	102	0	1	0	0	0	0	0	0	0	2991	667	23	4		4	CCT8L2	22	17073466	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	645	17073466	34231100	1553	100766											
MICAL3	57553	broad.mit.edu	37	chr22	18389668	18389668	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatctgacaaaaagaaagAaaaacgtggttagcatttct	7	5	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18389668	T	T	18389668	1	4	102	0	1	0	0	0	0	0	0	0	9664	261	9	5		5	MICAL3	22	18389668	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1316202	18389668	32914898	1554	100767											
DGCR14	8220	broad.mit.edu	37	chr22	19130301	19130301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacttgatggcaatctggCgcatccgttccaagtctcca	8	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19130301	A	A	19130301	3	1	102	1	0	0	0	0	1	0	0	0	4500	768	27	3	1224	3	DGCR14	22	19130301	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	740633	19130301	32174265	1555	100768											
ZDHHC8	29801	broad.mit.edu	37	chr22	20127706	20127706	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcactggcttccatgtggTgctggtcactcgggggcgca	14	13	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20127706	G	G	20127706	3	3	102	1	0	0	0	0	1	0	0	0	17747	1696	59	5	644	5	ZDHHC8	22	20127706	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	997405	20127706	31176860	1556	100769											
ZDHHC8	29801	broad.mit.edu	37	chr22	20128827	20128827	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaggctggcacgttcagcAgtgacctgcagaccccgcgc	13	14	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20128827	C	C	20128827	3	2	102	1	0	0	0	0	1	0	0	0	17747	188	7	5	1012	5	ZDHHC8	22	20128827	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1121	20128827	31175739	1557	100770											
PI4KA	5297	broad.mit.edu	37	chr22	21147516	21147516	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgagtactcccaagttccCtgcactgctagaagcctaga	8	12	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21147516	T	T	21147516	3	4	102	1	0	0	0	0	1	0	0	0	11968	681	24	4	4163	4	PI4KA	22	21147516	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1018689	21147516	30157050	1558	100771											
AIFM3	150209	broad.mit.edu	37	chr22	21329871	21329871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggccagatctgggtttGctgagttctgtcctgcagcc	13	12	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21329871	T	T	21329871	1	4	102	0	1	0	0	0	0	0	0	0	428	1334	46	3		3	AIFM3	22	21329871	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	182355	21329871	29974695	1559	100772											
LZTR1	8216	broad.mit.edu	37	chr22	21349315	21349315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaccagccagtggacattGgtagggagccccgttcccct	13	13	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21349315	T	T	21349315	3	4	102	1	0	0	0	0	1	0	0	0	9225	1362	47	2	2004	2	LZTR1	22	21349315	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	19444	21349315	29955251	1560	100773											
P2RX6	9127	broad.mit.edu	37	chr22	21380577	21380577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acctgctactgctgtatgtgGatagagaagcccatttctac	9	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21380577	T	T	21380577	3	4	102	1	0	0	0	0	1	0	0	0	11438	1174	41	3	1129	3	P2RX6	22	21380577	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	31262	21380577	29923989	1561	100774											
VPREB1	7441	broad.mit.edu	37	chr22	22599662	22599662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgtattactgtgctatGggggcccgcagctcggagaa	14	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22599662	T	T	22599662	3	4	102	1	0	0	0	0	1	0	0	0	17313	1348	47	2	357	2	VPREB1	22	22599662	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1219085	22599662	28704904	1562	100775											
BCR	613	broad.mit.edu	37	chr22	23606329	23606329	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccacaacagcaccctgtActgcctgcagacagatggca	9	16	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23606329	G	G	23606329	1	3	102	0	1	0	0	0	0	0	0	0	1393	406	14	5		5	BCR	22	23606329	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	1006667	23606329	27698237	1563	100776											
SUSD2	56241	broad.mit.edu	37	chr22	24582315	24582315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggctggccaacaggaccgGaggtctggaggtgctgctga	17	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24582315	T	T	24582315	3	4	102	1	0	0	0	0	1	0	0	0	15526	1174	41	3	1612	3	SUSD2	22	24582315	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	975986	24582315	26722251	1564	100777											
C22orf13	83606	broad.mit.edu	37	chr22	24939994	24939994	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacccccgagttcaccagCacgatggccacatggccctg	10	17	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24939994	A	A	24939994	2	1	102	1	0	0	0	0	0	0	0	1	2157	697	25	3		3	C22orf13	22	24939994	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	357679	24939994	26364572	1565	100778											
PIWIL3	440822	broad.mit.edu	37	chr22	25121378	25121378	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggagaactacttgtataGtgtcgggttccccgaccgct	13	10	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25121378	C	C	25121378	1	2	102	0	1	0	0	0	0	0	0	0	12054	1044	36	4		4	PIWIL3	22	25121378	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	181384	25121378	26183188	1566	100779											
CRYBB1	1414	broad.mit.edu	37	chr22	27007955	27007955	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acggccgcaggcacagagcaGatgctggagaaatggcagct	15	10	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27007955	C	C	27007955	1	2	102	0	1	0	0	0	0	0	0	0	3942	957	33	4		4	CRYBB1	22	27007955	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1886577	27007955	24296611	1567	100780											
MN1	4330	broad.mit.edu	37	chr22	28192956	28192956	+	Frame_Shift_Del	DEL	C	-	-													agctcgctgtcgccattctgCgcccctgaggccccgacggc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28192956	-	-	28192956	7	5	102	1	0	1	0	1	0	0	0	0	9767	755	27	0	394	0	MN1	22	28192956	Frame_Shift_Del	DEL	C	TCGA-38-4631-01A-01D-1753-08	1185001	28192956	23111610	1568	100781											
CCDC157	550631	broad.mit.edu	37	chr22	30765378	30765378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatggtctgagggtatgttAgcaccagcctgggccccagc	14	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30765378	G	G	30765378	1	3	102	0	1	0	0	0	0	0	0	0	2816	435	15	5		5	CCDC157	22	30765378	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2572422	30765378	20539188	1569	100782											
LIMK2	3985	broad.mit.edu	37	chr22	31661989	31661989	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccaaaggagcccctgctGttcagccgtgacatcagccg	10	16	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31661989	C	C	31661989	2	2	102	1	0	0	0	0	0	0	0	1	8874	1364	48	4		4	LIMK2	22	31661989	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	896611	31661989	19642577	1570	100783											
SFI1	9814	broad.mit.edu	37	chr22	31946170	31946170	+	Intron	SNP	T	C	C													gcctcccaaagtgctagggtTacaggtgtgagccaccgcgc							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31946170	C	C	31946170	1	2	102	0	1	0	0	0	0	0	0	0	14269	1769	61	5		5	SFI1	22	31946170	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	284181	31946170	19358396	1571	100784	436	2									
SFI1	9814	broad.mit.edu	37	chr22	31946179	31946179	+	Intron	SNP	G	A	A													agtgctagggttacaggtgtGagccaccgcgcccggcctgt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31946179	A	A	31946179	1	1	102	0	1	0	0	0	0	0	0	0	14269	1305	45	4		4	SFI1	22	31946179	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	9	31946179	19358387	1572	100785	436	2									
SYN3	8224	broad.mit.edu	37	chr22	32909545	32909545	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatagataatcggttcctgGgtcaaaggcatttagaaagt	10	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32909545	T	T	32909545	1	4	102	0	1	0	0	0	0	0	0	0	15561	1247	43	2		2	SYN3	22	32909545	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	963366	32909545	18395021	1573	100786											
ISX	91464	broad.mit.edu	37	chr22	35478514	35478514	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaccctctcccatgcagaagGaaggaagagcaagcggaggg	15	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35478514	A	A	35478514	3	1	102	1	0	0	0	0	1	0	0	0	7935	1174	41	4	239	4	ISX	22	35478514	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2568969	35478514	15826052	1574	100787											
APOL6	80830	broad.mit.edu	37	chr22	36055359	36055359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccttggctatgacttgGccactctctcaaaggaatgg	9	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36055359	T	T	36055359	3	4	102	1	0	0	0	0	1	0	0	0	812	1203	42	3	754	3	APOL6	22	36055359	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	576845	36055359	15249207	1575	100788											
CSF2RB	1439	broad.mit.edu	37	chr22	37334596	37334596	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggcttgccttccctccCgcctgaccttcctcagtcat	8	17	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37334596	A	A	37334596	1	1	102	0	1	0	0	0	0	0	0	0	3969	667	23	1		1	CSF2RB	22	37334596	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	1279237	37334596	13969970	1576	100789											
KCTD17	79734	broad.mit.edu	37	chr22	37455507	37455507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgcctcagcctgtgtccGgagaagtctcctgtctccct	9	17	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37455507	T	T	37455507	1	4	102	0	1	0	0	0	0	0	0	0	8174	1131	39	1		1	KCTD17	22	37455507	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	120911	37455507	13849059	1577	100790											
PICK1	9463	broad.mit.edu	37	chr22	38468617	38468617	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctgaaaaccatcaagccGgtaggtcctattgagcatgt	9	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38468617	A	A	38468617	2	1	102	1	0	0	0	0	0	0	0	1	11976	1130	39	4		4	PICK1	22	38468617	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1013110	38468617	12835949	1578	100791											
KCNJ4	3761	broad.mit.edu	37	chr22	38823948	38823948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagacaaggaaggccgCggagaagatcatgagcatgt	15	8	1	4	rs147603955	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38823948	A	A	38823948	3	1	102	1	0	0	0	0	1	0	0	0	8123	768	27	3	1151	3	KCNJ4	22	38823948	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	355331	38823948	12480618	1579	100792											
TTLL12	23170	broad.mit.edu	37	chr22	43575638	43575638	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgcacctggtagtgctcgGcgggcggctcgggtgtgcaa	18	11	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43575638	C	C	43575638	3	2	102	1	0	0	0	0	1	0	0	0	16851	1203	42	4	1147	4	TTLL12	22	43575638	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	4751690	43575638	7728928	1580	100793											
TTLL12	23170	broad.mit.edu	37	chr22	43576790	43576790	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttgaacttccacatctcCtccagcaccagggccacagc	8	16	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43576790	T	T	43576790	2	4	102	1	0	0	0	0	0	0	0	1	16851	680	24	4		4	TTLL12	22	43576790	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1152	43576790	7727776	1581	100794											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45130867	45130867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggagccaccaagctcGggtgcatgaccccctacccc	10	18	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45130867	T	T	45130867	1	4	102	0	1	0	0	0	0	0	0	0	12707	1131	39	1		1	PRR5-ARHGAP8	22	45130867	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1554077	45130867	6173699	1582	100795											
CELSR1	9620	broad.mit.edu	37	chr22	46795763	46795763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactccacatcggaggggcCgtgggacacctcaaactgga	14	12	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46795763	A	A	46795763	3	1	102	1	0	0	0	0	1	0	0	0	3251	652	23	1	3885	1	CELSR1	22	46795763	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1664896	46795763	4508803	1583	100796											
CELSR1	9620	broad.mit.edu	37	chr22	46931390	46931390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacaaagataggctcgttgtCgttgacatccagcacctgca	9	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46931390	A	A	46931390	3	1	102	1	0	0	0	0	1	0	0	0	3251	884	31	3	7506	3	CELSR1	22	46931390	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	135627	46931390	4373176	1584	100797											
BRD1	23774	broad.mit.edu	37	chr22	50197939	50197939	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagccgcttgagcagccaGtagctgtgggctcgctccac	13	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50197939	A	A	50197939	2	1	102	1	0	0	0	0	0	0	0	1	1510	1024	36	4		4	BRD1	22	50197939	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	3266549	50197939	1106627	1585	100798											
SELO	83642	broad.mit.edu	37	chr22	50644659	50644659	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgctcacgttacacgcgTtccctcctttccatgtgctg	8	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50644659	A	A	50644659	1	1	102	0	1	0	0	0	0	0	0	0	14131	1740	60	5		5	SELO	22	50644659	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	446720	50644659	659907	1586	100799											
MAPK12	6300	broad.mit.edu	37	chr22	50695498	50695498	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctccctgcagcctcccCcggggcccgtaccctcagcc	9	23	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50695498	A	A	50695498	1	1	102	0	1	0	0	0	0	0	0	0	9366	638	22	2		2	MAPK12	22	50695498	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	50839	50695498	609068	1587	100800											
NCAPH2	29781	broad.mit.edu	37	chr22	50957720	50957720	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggcccccaaggccgctctgGagcccaaggagtccaggagc	14	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50957720	T	T	50957720	4	4	102	1	0	0	0	0	0	1	0	0	10305	1175	41	3	866	3	NCAPH2	22	50957720	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	262222	50957720	346846	1588	100801											
PPP2R3B	28227	broad.mit.edu	37	chrX	347161	347161	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggcgcgttcctggggctgGaggcggcgcccaggggcagc	22	12	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	347161	C	C	347161	3	2	102	1	0	0	0	0	1	0	0	0	12490	1174	41	4	1513	4	PPP2R3B	23	347161	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08		347161	154923399	1589	100802											
CRLF2	64109	broad.mit.edu	37	chrX	1321261	1321262	+	Intron	DNP	GC	TT	TT													catcgccctgagtcgcggccGcccggctcacctgccactcg							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1321262	TT	TT	1321261	1	4	102	0	1	0	0	0	0	0	0	0	3919	1102	38	3		3	CRLF2	23	1321261	Intron	DNP	GC	TCGA-38-4631-01A-01D-1753-08	974100	1321261	153949299	1590	100803											
ASMT	438	broad.mit.edu	37	chrX	1743279	1743279	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgctggggccacctggCagacgccgtgaggtgggggc	20	12	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1743279	T	T	1743279	3	4	102	1	0	0	0	0	1	0	0	0	1049	710	25	4	372	4	ASMT	23	1743279	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	422018	1743279	153527281	1591	100804											
ARSH	347527	broad.mit.edu	37	chrX	2947469	2947469	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcccggttccggtctccttCgtctcctggcggaagctgca	13	15	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2947469	T	T	2947469	1	4	102	0	1	0	0	0	0	0	0	0	997	899	31	4		4	ARSH	23	2947469	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1204190	2947469	152323091	1592	100805											
MXRA5	25878	broad.mit.edu	37	chrX	3228004	3228004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtttcacggtgttcccgGgccgggtgtagatgaccggg	16	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3228004	T	T	3228004	3	4	102	1	0	0	0	0	1	0	0	0	10097	1232	43	2	250	2	MXRA5	23	3228004	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	280535	3228004	152042556	1593	100806											
MXRA5	25878	broad.mit.edu	37	chrX	3240048	3240048	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctccgtggtgttcccttGgatgtgggttctgcattctt	11	9	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3240048	T	T	3240048	2	4	102	1	0	0	0	0	0	0	0	1	10097	1335	47	2		2	MXRA5	23	3240048	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	12044	3240048	152030512	1594	100807											
MXRA5	25878	broad.mit.edu	37	chrX	3240386	3240386	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagggtaccaactgtggtttCcgcaggcttcttaactggag	13	9	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3240386	A	A	3240386	4	1	102	1	0	0	0	0	0	1	0	0	10097	864	30	3	5158	3	MXRA5	23	3240386	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	338	3240386	152030174	1595	100808											
NLGN4X	57502	broad.mit.edu	37	chrX	5821809	5821809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagcatgttgcagccgaCcttgtctgccaatatccgag	10	13	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5821809	T	T	5821809	3	4	102	1	0	0	0	0	1	0	0	0	10559	507	18	4	1548	4	NLGN4X	23	5821809	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2581423	5821809	149448751	1596	100809											
VCX3B	425054	broad.mit.edu	37	chrX	8433438	8433438	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgagaggtgtatatacaggGaggccaggcagcctggagtt	17	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8433438	T	T	8433438	1	4	102	0	1	0	0	0	0	0	0	0	17272	1189	41	3		3	VCX3B	23	8433438	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	2611629	8433438	146837122	1597	100810											
TLR8	51311	broad.mit.edu	37	chrX	12937852	12937852	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcaaactttttctgagcaaCacccagatcaaatacattag	5	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12937852	G	G	12937852	3	3	102	1	0	0	0	0	1	0	0	0	16080	477	17	4	699	4	TLR8	23	12937852	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	4504414	12937852	142332708	1598	100811											
OFD1	8481	broad.mit.edu	37	chrX	13762484	13762484	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agattgtaaaaacagtgactGagcagtggttgaaagttctg	12	4	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13762484	T	T	13762484	1	4	102	0	1	0	0	0	0	0	0	0	10933	1305	45	3		3	OFD1	23	13762484	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	824632	13762484	141508076	1599	100812											
OFD1	8481	broad.mit.edu	37	chrX	13786121	13786121	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcatttttaaaacacttaAaagttttacaaatgtatttg	5	4	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13786121	G	G	13786121	1	3	102	0	1	0	0	0	0	0	0	0	10933	29	1	5		5	OFD1	23	13786121	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	23637	13786121	141484439	1600	100813											
BMX	660	broad.mit.edu	37	chrX	15554498	15554498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcacacggctccgccaCcctgtgtcaacaaaggccaa	8	15	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15554498	A	A	15554498	3	1	102	1	0	0	0	0	1	0	0	0	1479	506	18	3	1216	3	BMX	23	15554498	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1768377	15554498	139716062	1601	100814											
RBBP7	5931	broad.mit.edu	37	chrX	16870709	16870709	+	Frame_Shift_Del	DEL	G	-	-													tttatgagattcgaaggtatGgagttttaattttaagttac							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16870709	-	-	16870709	7	5	102	1	0	1	0	1	0	0	0	0	13212	1348	47	0	369	0	RBBP7	23	16870709	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	1316211	16870709	138399851	1602	100815											
GPR64	10149	broad.mit.edu	37	chrX	19031889	19031889	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgaggctttcacaggaggTggggtgccggagacatgggt	18	6	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19031889	A	A	19031889	2	1	102	1	0	0	0	0	0	0	0	1	6770	1683	59	5		5	GPR64	23	19031889	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	2161180	19031889	136238671	1603	100816											
PDHA1	5160	broad.mit.edu	37	chrX	19367581	19367581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacattttgatgttcatgCttagtcatcattttcttcta	5	7	5	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19367581	T	T	19367581	1	4	102	0	1	0	0	0	0	0	0	0	11758	812	28	4		4	PDHA1	23	19367581	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	335692	19367581	135902979	1604	100817											
CNKSR2	22866	broad.mit.edu	37	chrX	21534736	21534736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaatatgagatggaagcCccttgctctgcaggtaatga	11	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21534736	A	A	21534736	3	1	102	1	0	0	0	0	1	0	0	0	3639	623	22	2	978	2	CNKSR2	23	21534736	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2167155	21534736	133735824	1605	100818											
CNKSR2	22866	broad.mit.edu	37	chrX	21667055	21667055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgtatttcaaccaagatGgaatacaagctatcatttat	5	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21667055	T	T	21667055	3	4	102	1	0	0	0	0	1	0	0	0	3639	1348	47	2	2890	2	CNKSR2	23	21667055	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	132319	21667055	133603505	1606	100819											
PTCHD1	139411	broad.mit.edu	37	chrX	23412273	23412273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtagatatcgatagtaccCgtgtggttgaccaaattaca	10	7	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23412273	A	A	23412273	3	1	102	1	0	0	0	0	1	0	0	0	12838	652	23	1	2648	1	PTCHD1	23	23412273	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1745218	23412273	131858287	1607	100820											
FAM48B1	100130302	broad.mit.edu	37	chrX	24381860	24381860	+	Frame_Shift_Del	DEL	G	-	-													tgacccacagctcccagtctGgccagcccaggaggtagaag							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24381860	-	-	24381860	7	5	102	1	0	1	0	1	0	0	0	0	5624	1357	47	0	985	0	FAM48B1	23	24381860	Frame_Shift_Del	DEL	G	TCGA-38-4631-01A-01D-1753-08	969587	24381860	130888700	1608	100821											
PDK3	5165	broad.mit.edu	37	chrX	24513069	24513069	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catttggcagcgagaccattCtctgtaaaagtgcacatact	8	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24513069	T	T	24513069	1	4	102	0	1	0	0	0	0	0	0	0	11771	928	32	4		4	PDK3	23	24513069	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	131209	24513069	130757491	1609	100822											
PCYT1B	9468	broad.mit.edu	37	chrX	24605308	24605308	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacagatgtctcttattgcAcctgattattgtgatgtggt	10	6	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24605308	T	T	24605308	1	4	102	0	1	0	0	0	0	0	0	0	11705	174	6	5		5	PCYT1B	23	24605308	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	92239	24605308	130665252	1610	100823											
MAGEB4	4115	broad.mit.edu	37	chrX	30260998	30260998	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagctcatcacccaagatcTggtacaggaaaaatatctgg	8	9	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30260998	A	A	30260998	3	1	102	1	0	0	0	0	1	0	0	0	9270	1580	55	5	748	5	MAGEB4	23	30260998	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	5655690	30260998	125009562	1611	100824											
MAGEB1	4112	broad.mit.edu	37	chrX	30269673	30269673	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaactcaggcagattgttCactttgtttttgtggcaaga	11	6	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30269673	A	A	30269673	1	1	102	0	1	0	0	0	0	0	0	0	9264	841	29	3		3	MAGEB1	23	30269673	3'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	8675	30269673	125000887	1612	100825											
DMD	1756	broad.mit.edu	37	chrX	32591656	32591656	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtacatacggccagtttTtgaagacttgataacatttc	7	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32591656	C	C	32591656	2	2	102	1	0	0	0	0	0	0	0	1	4620	1838	64	5		5	DMD	23	32591656	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	2321983	32591656	122678904	1613	100826											
DMD	1756	broad.mit.edu	37	chrX	32591898	32591898	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttgccatttgagaaggatGtcttgtaaaagaacccagcg	11	8	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32591898	A	A	32591898	2	1	102	1	0	0	0	0	0	0	0	1	4620	1368	48	4		4	DMD	23	32591898	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	242	32591898	122678662	1614	100827											
FAM47A	158724	broad.mit.edu	37	chrX	34150342	34150342	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtttgttacagtaccagggCttggagtccatgcccgggga	14	10	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34150342	T	T	34150342	2	4	102	1	0	0	0	0	0	0	0	1	5620	796	28	4		4	FAM47A	23	34150342	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1558444	34150342	121120218	1615	100828											
FAM47B	170062	broad.mit.edu	37	chrX	34960895	34960895	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctagcgactagagcgGcagggatctggaacctcaga	13	11	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34960895	T	T	34960895	1	4	102	0	1	0	0	0	0	0	0	0	5621	1218	42	3		3	FAM47B	23	34960895	5'Flank	SNP	G	TCGA-38-4631-01A-01D-1753-08	810553	34960895	120309665	1616	100829											
FAM47B	170062	broad.mit.edu	37	chrX	34961712	34961712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtggatcctcccgagactgGagtgtcccatctctgcccag	11	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961712	T	T	34961712	3	4	102	1	0	0	0	0	1	0	0	0	5621	1174	41	3	766	3	FAM47B	23	34961712	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	817	34961712	120308848	1617	100830											
CXorf22	170063	broad.mit.edu	37	chrX	36004214	36004214	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcttttggggttgctcttCttgaggagtatctttgtggt	13	6	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36004214	A	A	36004214	1	1	102	0	1	0	0	0	0	0	0	0	4135	928	32	3		3	CXorf22	23	36004214	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1042502	36004214	119266346	1618	100831											
FAM47C	442444	broad.mit.edu	37	chrX	37028757	37028757	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagagcctcttgagactcgCgtatctcatctccgcccgga	9	16	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37028757	G	G	37028757	2	3	102	1	0	0	0	0	0	0	0	1	5622	755	27	4		4	FAM47C	23	37028757	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1024543	37028757	118241803	1619	100832											
CYBB	1536	broad.mit.edu	37	chrX	37653016	37653016	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagcactctctgaacttggaGacaggcaaaatgaaagttat	9	7	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37653016	T	T	37653016	3	4	102	1	0	0	0	0	1	0	0	0	4166	942	33	3	454	3	CYBB	23	37653016	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	624259	37653016	117617544	1620	100833											
ATP6AP2	10159	broad.mit.edu	37	chrX	40464916	40464916	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcgccttggccttggctgTgattatcacctcttacaata	8	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40464916	G	G	40464916	3	3	102	1	0	0	0	0	1	0	0	0	1171	1696	59	5	996	5	ATP6AP2	23	40464916	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	2811900	40464916	114805644	1621	100834											
NYX	60506	broad.mit.edu	37	chrX	41333566	41333566	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgagctgctctacctggaccGcaacagcatcgccttcgtgg	11	15	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41333566	C	C	41333566	3	2	102	1	0	0	0	0	1	0	0	0	10892	1087	38	4	866	4	NYX	23	41333566	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	868650	41333566	113936994	1622	100835											
CASK	8573	broad.mit.edu	37	chrX	41495914	41495914	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaggcgtaacgatcccgctCctatgtaagatgaaagataa	10	8	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41495914	A	A	41495914	4	1	102	1	0	0	0	0	0	1	0	0	2691	869	30	3	2024	3	CASK	23	41495914	Nonsense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	162348	41495914	113774646	1623	100836											
CXorf36	79742	broad.mit.edu	37	chrX	45023392	45023392	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagttgggagaaggctaacActttctggaagttctcagtg	12	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45023392	T	T	45023392	1	4	102	0	1	0	0	0	0	0	0	0	4139	174	6	5		5	CXorf36	23	45023392	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	3527478	45023392	110247168	1624	100837											
USP11	8237	broad.mit.edu	37	chrX	47106710	47106710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccccacccacagggacctgGacttctctgagtttgtcatc	8	15	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47106710	T	T	47106710	3	4	102	1	0	0	0	0	1	0	0	0	17168	1174	41	3	2631	3	USP11	23	47106710	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2083318	47106710	108163850	1625	100838											
CFP	5199	broad.mit.edu	37	chrX	47485815	47485815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacttgcggcccctgcaggtCctcccgcgtgactgctggcc	12	17	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47485815	A	A	47485815	3	1	102	1	0	0	0	0	1	0	0	0	3323	854	30	3	377	3	CFP	23	47485815	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	379105	47485815	107784745	1626	100839											
EBP	10682	broad.mit.edu	37	chrX	48385706	48385706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactagaggggcactgggcaCtagaggggttgatgggggat	19	6	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48385706	A	A	48385706	1	1	102	0	1	0	0	0	0	0	0	0	4926	580	20	3		3	EBP	23	48385706	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	899891	48385706	106884854	1627	100840											
HDAC6	10013	broad.mit.edu	37	chrX	48663850	48663850	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actccatctccccagcttccCggaaggccctgagcggctcc	9	19	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48663850	G	G	48663850	3	3	102	1	0	0	0	0	1	0	0	0	7078	652	23	4	331	4	HDAC6	23	48663850	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	278144	48663850	106606710	1628	100841											
CACNA1F	778	broad.mit.edu	37	chrX	49063081	49063081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatggtgaaggagggcttcCgacctgggggtgggtggggc	23	6	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49063081	A	A	49063081	3	1	102	1	0	0	0	0	1	0	0	0	2569	652	23	1	549	1	CACNA1F	23	49063081	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	399231	49063081	106207479	1629	100842											
CACNA1F	778	broad.mit.edu	37	chrX	49063213	49063213	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtggggggcagcagacGgcggcgtggtaccaggtgcc	21	9	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49063213	A	A	49063213	3	1	102	1	0	0	0	0	1	0	0	0	2569	1116	39	4	581	4	CACNA1F	23	49063213	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	132	49063213	106207347	1630	100843											
CCNB3	85417	broad.mit.edu	37	chrX	50089805	50089805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgcgcagatatgctaGggtaagagagaagagacaca	12	6	1	4	rs61751434	byFrequency;by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50089805	T	T	50089805	3	4	102	1	0	0	0	0	1	0	0	0	2944	1014	35	2	3839	2	CCNB3	23	50089805	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1026592	50089805	105180755	1631	100844											
SSX7	280658	broad.mit.edu	37	chrX	52677009	52677009	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtcatcaggccttctAgattaaatttaatgtctcca	5	9	5	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52677009	G	G	52677009	1	3	102	0	1	0	0	0	0	0	0	0	15327	435	15	5		5	SSX7	23	52677009	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2587204	52677009	102593551	1632	100845											
SSX7	280658	broad.mit.edu	37	chrX	52682352	52682352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagatctcccccaagacCctggtccttgtctccagtat	6	16	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52682352	A	A	52682352	1	1	102	0	1	0	0	0	0	0	0	0	15327	638	22	2		2	SSX7	23	52682352	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	5343	52682352	102588208	1633	100846											
HUWE1	10075	broad.mit.edu	37	chrX	53588986	53588986	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggagggagacgctgaggcTagcaacccagactgttggtt	16	8	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53588986	C	C	53588986	1	2	102	0	1	0	0	0	0	0	0	0	7531	1537	53	5		5	HUWE1	23	53588986	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	906634	53588986	101681574	1634	100847											
PHF8	23133	broad.mit.edu	37	chrX	54022108	54022108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaatgccttttcttccCtgccccatgctccttacttc	3	17	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54022108	A	A	54022108	1	1	102	0	1	0	0	0	0	0	0	0	11935	696	24	2		2	PHF8	23	54022108	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	433122	54022108	101248452	1635	100848											
WNK3	65267	broad.mit.edu	37	chrX	54280245	54280245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagatgcagtgacttacaCttgatgataacccaatttac	8	8	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54280245	A	A	54280245	1	1	102	0	1	0	0	0	0	0	0	0	17506	580	20	3		3	WNK3	23	54280245	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	258137	54280245	100990315	1636	100849											
PFKFB1	5207	broad.mit.edu	37	chrX	54985181	54985181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaattaaaatgttgagCttatggttgcggatttggcc	10	6	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54985181	A	A	54985181	1	1	102	0	1	0	0	0	0	0	0	0	11855	812	28	3		3	PFKFB1	23	54985181	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	704936	54985181	100285379	1637	100850											
KLF8	11279	broad.mit.edu	37	chrX	56310868	56310868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcggtgcacagactgcaacCgcagcttttctcgttctgac	9	13	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56310868	A	A	56310868	3	1	102	1	0	0	0	0	1	0	0	0	8423	652	23	1	1043	1	KLF8	23	56310868	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1325687	56310868	98959692	1638	100851											
LAS1L	81887	broad.mit.edu	37	chrX	64751152	64751152	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgactccaggtggagacCctcctgcctatccctctacc	7	18	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64751152	G	G	64751152	1	3	102	0	1	0	0	0	0	0	0	0	8708	638	22	4		4	LAS1L	23	64751152	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	8440284	64751152	90519408	1639	100852											
HEPH	9843	broad.mit.edu	37	chrX	65413471	65413471	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggaagataggcatcttGgaatcctgggtgaggaattt	15	4	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65413471	T	T	65413471	4	4	102	1	0	0	0	0	0	1	0	0	7121	1349	47	2	1552	2	HEPH	23	65413471	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	662319	65413471	89857089	1640	100853											
HEPH	9843	broad.mit.edu	37	chrX	65428009	65428009	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgactgtggtattcaagaaTaatgccagccgcccctactc	8	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65428009	C	C	65428009	2	2	102	1	0	0	0	0	0	0	0	1	7121	1403	49	5		5	HEPH	23	65428009	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	14538	65428009	89842551	1641	100854											
OPHN1	4983	broad.mit.edu	37	chrX	67290644	67290644	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaagtgacagtctcagCatacttcttgctgctttcag	8	12	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67290644	A	A	67290644	1	1	102	0	1	0	0	0	0	0	0	0	10969	725	25	3		3	OPHN1	23	67290644	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1862635	67290644	87979916	1642	100855											
EDA	1896	broad.mit.edu	37	chrX	68836384	68836384	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgtggagccgagtcccgcCttggcggctcgggcacccct	14	16	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68836384	T	T	68836384	3	4	102	1	0	0	0	0	1	0	0	0	4943	681	24	4	234	4	EDA	23	68836384	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1545740	68836384	86434176	1643	100856											
ARR3	407	broad.mit.edu	37	chrX	69489928	69489928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttttcctgaccaaagtgCtgtctgtccttctctccaca	6	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69489928	A	A	69489928	1	1	102	0	1	0	0	0	0	0	0	0	983	812	28	3		3	ARR3	23	69489928	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	653544	69489928	85780632	1644	100857											
TEX11	56159	broad.mit.edu	37	chrX	69843921	69843921	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacatgtgtgaatgaatacAtaccaagttactaaccttga	6	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69843921	C	C	69843921	1	2	102	0	1	0	0	0	0	0	0	0	15896	232	8	5		5	TEX11	23	69843921	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	353993	69843921	85426639	1645	100858											
TEX11	56159	broad.mit.edu	37	chrX	69898599	69898599	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatttttatagtgaatgcActattttttgttgcagtgga	8	3	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69898599	C	C	69898599	1	2	102	0	1	0	0	0	0	0	0	0	15896	174	6	5		5	TEX11	23	69898599	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	54678	69898599	85371961	1646	100859											
SLC7A3	84889	broad.mit.edu	37	chrX	70148690	70148690	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attataccctgctctttgccTcaccagtgagcagcaacacg	7	14	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70148690	A	A	70148690	1	1	102	0	1	0	0	0	0	0	0	0	14812	1566	54	5		5	SLC7A3	23	70148690	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	250091	70148690	85121870	1647	100860											
SLC7A3	84889	broad.mit.edu	37	chrX	70148709	70148709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccagtgagcagcaacaCgaggcccaaagcaaagaaat	9	12	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70148709	A	A	70148709	3	1	102	1	0	0	0	0	1	0	0	0	14812	536	19	3	1385	3	SLC7A3	23	70148709	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	19	70148709	85121851	1648	100861											
MED12	9968	broad.mit.edu	37	chrX	70357887	70357887	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaagtggtgggactggtCagaactttcggagacatcaa	13	7	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70357887	A	A	70357887	1	1	102	0	1	0	0	0	0	0	0	0	9521	841	29	3		3	MED12	23	70357887	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	209178	70357887	84912673	1649	100862											
ITGB1BP2	26548	broad.mit.edu	37	chrX	70521649	70521649	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcagtaatcattcaaccaAcgcttccatgtctctactct	3	13	5	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70521649	T	T	70521649	1	4	102	0	1	0	0	0	0	0	0	0	7962	58	2	5		5	ITGB1BP2	23	70521649	5'UTR	SNP	A	TCGA-38-4631-01A-01D-1753-08	163762	70521649	84748911	1650	100863											
ACRC	93953	broad.mit.edu	37	chrX	70811981	70811981	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttttgcagttacatcctTaatgttcagtcaagcagtga	7	7	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70811981	A	A	70811981	2	1	102	1	0	0	0	0	0	0	0	1	171	1741	61	5		5	ACRC	23	70811981	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	290332	70811981	84458579	1651	100864											
SLC16A2	6567	broad.mit.edu	37	chrX	73693482	73693482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttttcaaagttaagtgGgcacctggtctttgagaatc	9	7	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73693482	T	T	73693482	1	4	102	0	1	0	0	0	0	0	0	0	14521	1247	43	2		2	SLC16A2	23	73693482	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	2881501	73693482	81577078	1652	100865											
ATRX	546	broad.mit.edu	37	chrX	76889201	76889201	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgaagaaaacttaccacCtataagaaaacagattgtca	6	7	1	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76889201	A	A	76889201	5	1	102	1	0	0	0	0	0	0	1	0	1212	695	24	2	2741	2	ATRX	23	76889201	Splice_Site	SNP	C	TCGA-38-4631-01A-01D-1753-08	3195719	76889201	78381359	1653	100866											
ATRX	546	broad.mit.edu	37	chrX	76953071	76953071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttcaacatcaaccaacCtctttgatcgtgacgatcct	4	15	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76953071	A	A	76953071	3	1	102	1	0	0	0	0	1	0	0	0	1212	695	24	2	7364	2	ATRX	23	76953071	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	63870	76953071	78317489	1654	100867											
BRWD3	254065	broad.mit.edu	37	chrX	79990717	79990717	+	Intron	DEL	T	-	-													ctaaagataaaaataaggtgTttttgtgtttcatcatgttt							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79990717	-	-	79990717	6	5	102	0	1	1	0	1	0	0	0	0	1535	1740	60	0		0	BRWD3	23	79990717	Intron	DEL	T	TCGA-38-4631-01A-01D-1753-08	3037646	79990717	75279843	1655	100868											
HMGN5	79366	broad.mit.edu	37	chrX	80374026	80374026	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaagaaaaggaaaaaaatCatatttgaagaaagaacgct	8	3	1	4	rs7053255		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80374026	T	T	80374026	1	4	102	0	1	0	0	0	0	0	0	0	7305	841	29	4		4	HMGN5	23	80374026	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	383309	80374026	74896534	1656	100869											
HMGN5	79366	broad.mit.edu	37	chrX	80377161	80377161	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactaactgcagcacgaccTgtactctcctctggaaaaaa	7	12	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80377161	A	A	80377161	1	1	102	0	1	0	0	0	0	0	0	0	7305	1595	55	5		5	HMGN5	23	80377161	5'UTR	SNP	T	TCGA-38-4631-01A-01D-1753-08	3135	80377161	74893399	1657	100870											
SATL1	340562	broad.mit.edu	37	chrX	84362769	84362769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggcttgtgcctgattgGctggtgcctacttgtctcat	11	9	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84362769	T	T	84362769	3	4	102	1	0	0	0	0	1	0	0	0	13967	1194	42	3	712	3	SATL1	23	84362769	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	3985608	84362769	70907791	1658	100871											
POF1B	79983	broad.mit.edu	37	chrX	84622790	84622791	+	Intron	DNP	GG	TT	TT													tcctgttaagagaaacaaaaGggagttcagaaattatttga							TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	84622791	TT	TT	84622790	1	4	102	0	1	0	0	0	0	0	0	0	12277	1015	35	2		2	POF1B	23	84622790	Intron	DNP	GG	TCGA-38-4631-01A-01D-1753-08	260021	84622790	70647770	1659	100872											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177645	89177645	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagctcaccggaatagcCcagccgaagaaaaaggtcaa	10	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177645	A	A	89177645	2	1	102	1	0	0	0	0	0	0	0	1	15950	610	22	2		2	TGIF2LX	23	89177645	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	4554855	89177645	66092915	1660	100873											
PABPC5	140886	broad.mit.edu	37	chrX	90691663	90691663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagtggatgagatgaatGgccgcatagtgggctccaag	15	7	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90691663	T	T	90691663	3	4	102	1	0	0	0	0	1	0	0	0	11461	1348	47	2	1089	2	PABPC5	23	90691663	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1514018	90691663	64578897	1661	100874											
PCDH11X	27328	broad.mit.edu	37	chrX	91873299	91873299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccaactgtggaagaggCctctgacaactgcactcaag	9	12	3	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873299	A	A	91873299	3	1	102	1	0	0	0	0	1	0	0	0	11602	739	26	3	3552	3	PCDH11X	23	91873299	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1181636	91873299	63397261	1662	100875											
TNMD	64102	broad.mit.edu	37	chrX	99854595	99854595	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaccgctattgccgccgcGtctgtgaacctttactaggc	10	14	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99854595	A	A	99854595	3	1	102	1	0	0	0	0	1	0	0	0	16445	1145	40	4	861	4	TNMD	23	99854595	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	7981296	99854595	55415965	1663	100876											
NOX1	27035	broad.mit.edu	37	chrX	100129158	100129158	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtttggagcccttctagGcaacagggaagattcagcaa	13	8	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100129158	T	T	100129158	1	4	102	0	1	0	0	0	0	0	0	0	10651	1218	42	3		3	NOX1	23	100129158	5'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	274563	100129158	55141402	1664	100877											
DRP2	1821	broad.mit.edu	37	chrX	100510265	100510265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacagctgcttatttgcCagaaatagttctccttgaga	7	10	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100510265	A	A	100510265	1	1	102	0	1	0	0	0	0	0	0	0	4804	609	21	2		2	DRP2	23	100510265	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	381107	100510265	54760295	1665	100878											
TAF7L	54457	broad.mit.edu	37	chrX	100532940	100532940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaatcttaagttccacaCatcaagactggcacacaaac	5	11	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100532940	A	A	100532940	1	1	102	0	1	0	0	0	0	0	0	0	15652	493	17	3		3	TAF7L	23	100532940	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	22675	100532940	54737620	1666	100879											
ARMCX2	9823	broad.mit.edu	37	chrX	100912509	100912509	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgtatttgtagacacaGtaccaggcaccagcccctat	9	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100912509	T	T	100912509	4	4	102	1	0	0	0	0	0	1	0	0	964	1024	36	3	1836	3	ARMCX2	23	100912509	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	379569	100912509	54358051	1667	100880											
WBP5	51186	broad.mit.edu	37	chrX	102612943	102612943	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtttaccttgatttttAtctgatattaacaataccat	4	6	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102612943	T	T	102612943	1	4	102	0	1	0	0	0	0	0	0	0	17389	464	16	5		5	WBP5	23	102612943	3'UTR	SNP	A	TCGA-38-4631-01A-01D-1753-08	1700434	102612943	52657617	1668	100881											
ESX1	80712	broad.mit.edu	37	chrX	103498743	103498743	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcccccaaaaaccaagggCggaggcagcgcccgtgagcc	13	16	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103498743	A	A	103498743	1	1	102	0	1	0	0	0	0	0	0	0	5305	783	27	3		3	ESX1	23	103498743	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	885800	103498743	51771817	1669	100882											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105011394	105011394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactctggtgtcatctcagGctgatctccctgaattccac	7	15	4	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105011394	A	A	105011394	3	1	102	1	0	0	0	0	1	0	0	0	7732	1203	42	4	1839	4	IL1RAPL2	23	105011394	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1512651	105011394	50259166	1670	100883											
RNF128	79589	broad.mit.edu	37	chrX	105937716	105937716	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccatctagaactggtctagGatctggcaacaaggttgtaa	10	8	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105937716	T	T	105937716	1	4	102	0	1	0	0	0	0	0	0	0	13547	1189	41	3		3	RNF128	23	105937716	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	926322	105937716	49332844	1671	100884											
RNF128	79589	broad.mit.edu	37	chrX	106016114	106016114	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactaagaatgtttcaccaaActaaaactgaatttgtttta	4	6	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106016114	T	T	106016114	1	4	102	0	1	0	0	0	0	0	0	0	13547	58	2	5		5	RNF128	23	106016114	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	78398	106016114	49254446	1672	100885											
PSMD10	5716	broad.mit.edu	37	chrX	107331000	107331000	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcttcaagttacccttgGctgctgcccggtgcattgct	9	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107331000	T	T	107331000	3	4	102	1	0	0	0	0	1	0	0	0	12799	1203	42	3	245	3	PSMD10	23	107331000	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	1314886	107331000	47939560	1673	100886											
PSMD10	5716	broad.mit.edu	37	chrX	107334817	107334817	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgccggctccggctacgCcagtcaaaacagccgttaga	11	15	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107334817	A	A	107334817	1	1	102	0	1	0	0	0	0	0	0	0	12799	754	26	3		3	PSMD10	23	107334817	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	3817	107334817	47935743	1674	100887											
COL4A6	1288	broad.mit.edu	37	chrX	107402931	107402931	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctcgttgatgttgcagtAgatgaagggcatggtgctga	14	7	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107402931	T	T	107402931	3	4	102	1	0	0	0	0	1	0	0	0	3727	420	15	5	507	5	COL4A6	23	107402931	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	68114	107402931	47867629	1675	100888											
COL4A6	1288	broad.mit.edu	37	chrX	107417735	107417735	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggccaggtaagccccGgattcccatgaagccagggg	13	13	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107417735	T	T	107417735	2	4	102	1	0	0	0	0	0	0	0	1	3727	1115	39	1		1	COL4A6	23	107417735	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	14804	107417735	47852825	1676	100889											
COL4A5	1287	broad.mit.edu	37	chrX	107911660	107911660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagggtcccccaggccCtcctggttctccgggtccag	13	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107911660	A	A	107911660	3	1	102	1	0	0	0	0	1	0	0	0	3726	681	24	2	3878	2	COL4A5	23	107911660	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	493925	107911660	47358900	1677	100890											
GUCY2F	2986	broad.mit.edu	37	chrX	108625421	108625421	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaattgtaacagtgctgaGactgacatgaatgcgataag	11	5	0	4			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108625421	T	T	108625421	3	4	102	1	0	0	0	0	1	0	0	0	6963	942	33	3	262	3	GUCY2F	23	108625421	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	713761	108625421	46645139	1678	100891											
GUCY2F	2986	broad.mit.edu	37	chrX	108631642	108631642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggaatcaggggagagCtatctttttccctttctttt	10	9	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108631642	A	A	108631642	1	1	102	0	1	0	0	0	0	0	0	0	6963	812	28	3		3	GUCY2F	23	108631642	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	6221	108631642	46638918	1679	100892											
GUCY2F	2986	broad.mit.edu	37	chrX	108635391	108635391	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccccttcatgccacatacAcctgctaaaaatacaccaaa	2	16	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108635391	T	T	108635391	1	4	102	0	1	0	0	0	0	0	0	0	6963	174	6	5		5	GUCY2F	23	108635391	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	3749	108635391	46635169	1680	100893											
GUCY2F	2986	broad.mit.edu	37	chrX	108684682	108684682	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttggacctctgaggtaatCtggaagcttacactggcacg	11	10	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108684682	A	A	108684682	3	1	102	1	0	0	0	0	1	0	0	0	6963	912	32	3	1779	3	GUCY2F	23	108684682	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	49291	108684682	46585878	1681	100894											
GUCY2F	2986	broad.mit.edu	37	chrX	108691261	108691261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggcttgtggctaccatGttggacagggcagcaaaaga	14	7	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108691261	T	T	108691261	1	4	102	0	1	0	0	0	0	0	0	0	6963	1392	48	3		3	GUCY2F	23	108691261	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	6579	108691261	46579299	1682	100895											
KCNE1L	23630	broad.mit.edu	37	chrX	108867952	108867952	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccggggcccattcgtgctCggcgcaagcctgggacggct	15	15	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108867952	T	T	108867952	3	4	102	1	0	0	0	0	1	0	0	0	8092	893	31	4	134	4	KCNE1L	23	108867952	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	176691	108867952	46402608	1683	100896											
DOCK11	139818	broad.mit.edu	37	chrX	117783111	117783111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtgaaaataaaagcgcCtcttcatctttcttctcttc	5	11	6	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117783111	A	A	117783111	1	1	102	0	1	0	0	0	0	0	0	0	4726	696	24	2		2	DOCK11	23	117783111	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	8915159	117783111	37487449	1684	100897											
PGRMC1	10857	broad.mit.edu	37	chrX	118370259	118370259	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgcgcgccactcgctcgctCagagggaggagaaagtggcg	16	13	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118370259	A	A	118370259	1	1	102	0	1	0	0	0	0	0	0	0	11901	841	29	3		3	PGRMC1	23	118370259	5'UTR	SNP	C	TCGA-38-4631-01A-01D-1753-08	587148	118370259	36900301	1685	100898											
UPF3B	65109	broad.mit.edu	37	chrX	118986661	118986661	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgagaaagaaagggggcAgccccattcccagccatcct	10	14	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118986661	T	T	118986661	1	4	102	0	1	0	0	0	0	0	0	0	17132	203	7	5		5	UPF3B	23	118986661	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	616402	118986661	36283899	1686	100899											
NKAP	79576	broad.mit.edu	37	chrX	119068536	119068536	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatctgcaaattaaagcaCattacaattaagaaaaaaat	3	6	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119068536	T	T	119068536	1	4	102	0	1	0	0	0	0	0	0	0	10534	493	17	4		4	NKAP	23	119068536	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	81875	119068536	36202024	1687	100900											
GLUD2	2747	broad.mit.edu	37	chrX	120181573	120181573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccaaagcgctgctgccgtCccgggccgggcccgctgccc	15	19	0	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120181573	A	A	120181573	3	1	102	1	0	0	0	0	1	0	0	0	6541	855	30	3	37	3	GLUD2	23	120181573	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	1113037	120181573	35088987	1688	100901											
GRIA3	2892	broad.mit.edu	37	chrX	122318470	122318470	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcttttgggtcattctcacgGaggattccccaacaccatca	8	13	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122318470	A	A	122318470	3	1	102	1	0	0	0	0	1	0	0	0	6835	1174	41	4	85	4	GRIA3	23	122318470	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	2136897	122318470	32952090	1689	100902											
GRIA3	2892	broad.mit.edu	37	chrX	122319874	122319874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttcctccctttgggaCgttggggacctcatttgcat	10	11	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122319874	A	A	122319874	1	1	102	0	1	0	0	0	0	0	0	0	6835	551	19	3		3	GRIA3	23	122319874	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1404	122319874	32950686	1690	100903											
STAG2	10735	broad.mit.edu	37	chrX	123220443	123220443	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctttcagatgtcactccgaAgagaggatgtgtggcttcca	11	10	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123220443	T	T	123220443	4	4	102	1	0	0	0	0	0	1	0	0	15361	64	3	5	3210	5	STAG2	23	123220443	Nonsense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	900569	123220443	32050117	1691	100904											
SMARCA1	6594	broad.mit.edu	37	chrX	128633831	128633831	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaaaacctaaaaggtgatCatttttataaaagtttatga	5	3	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128633831	A	A	128633831	1	1	102	0	1	0	0	0	0	0	0	0	14882	841	29	3		3	SMARCA1	23	128633831	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	5413388	128633831	26636729	1692	100905											
SMARCA1	6594	broad.mit.edu	37	chrX	128650469	128650469	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatctctttgctcggtcGgctttctaatttgcaaaaca	6	10	3	0	rs145557250	byFrequency	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128650469	T	T	128650469	2	4	102	1	0	0	0	0	0	0	0	1	14882	1103	39	1		1	SMARCA1	23	128650469	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	16638	128650469	26620091	1693	100906											
BCORL1	63035	broad.mit.edu	37	chrX	129147051	129147051	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagccaaaaatggactaCgctgggaacgtggcagaggc	13	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129147051	T	T	129147051	2	4	102	1	0	0	0	0	0	0	0	1	1392	547	19	4		4	BCORL1	23	129147051	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	496582	129147051	26123509	1694	100907											
BCORL1	63035	broad.mit.edu	37	chrX	129148882	129148882	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcaactgcactgatcagcAccattcctggcacctacgtg	7	15	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129148882	T	T	129148882	3	4	102	1	0	0	0	0	1	0	0	0	1392	159	6	5	2144	5	BCORL1	23	129148882	Missense_Mutation	SNP	A	TCGA-38-4631-01A-01D-1753-08	1831	129148882	26121678	1695	100908											
AIFM1	9131	broad.mit.edu	37	chrX	129272583	129272583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccctttctgccaagagCacaggccagttcgctaccaa	7	16	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129272583	A	A	129272583	3	1	102	1	0	0	0	0	1	0	0	0	426	710	25	3	933	3	AIFM1	23	129272583	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	123701	129272583	25997977	1696	100909											
ENOX2	10495	broad.mit.edu	37	chrX	129837135	129837135	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caattcccagcggtgccattCcaagattattcattgctgtg	8	11	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129837135	G	G	129837135	3	3	102	1	0	0	0	0	1	0	0	0	5169	855	30	4	1737	4	ENOX2	23	129837135	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	564552	129837135	25433425	1697	100910											
ARHGAP36	158763	broad.mit.edu	37	chrX	130218845	130218845	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgaccaagatggagctGtggtgggccaggcagacagt	17	7	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130218845	C	C	130218845	1	2	102	0	1	0	0	0	0	0	0	0	885	1392	48	4		4	ARHGAP36	23	130218845	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	381710	130218845	25051715	1698	100911											
IGSF1	3547	broad.mit.edu	37	chrX	130409602	130409602	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggtggatccccagagctGcattgaagtggcttctcctt	11	11	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130409602	A	A	130409602	4	1	102	1	0	0	0	0	0	1	0	0	7666	1328	46	4	996	4	IGSF1	23	130409602	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	190757	130409602	24860958	1699	100912											
IGSF1	3547	broad.mit.edu	37	chrX	130410904	130410904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctctacctggagtccccCctcctaacctgtcaccacga	5	20	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130410904	A	A	130410904	1	1	102	0	1	0	0	0	0	0	0	0	7666	638	22	2		2	IGSF1	23	130410904	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1302	130410904	24859656	1700	100913											
IGSF1	3547	broad.mit.edu	37	chrX	130415609	130415609	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggatccctggggtatggaGgggcattcctctgaagagtt	16	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130415609	A	A	130415609	1	1	102	0	1	0	0	0	0	0	0	0	7666	1015	35	4		4	IGSF1	23	130415609	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	4705	130415609	24854951	1701	100914											
GPC4	2239	broad.mit.edu	37	chrX	132473343	132473343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagagcagcaggtagaacCctggggacagatcttcaaat	12	8	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132473343	A	A	132473343	3	1	102	1	0	0	0	0	1	0	0	0	6665	623	22	2	1515	2	GPC4	23	132473343	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2057734	132473343	22797217	1702	100915											
GPC4	2239	broad.mit.edu	37	chrX	132548911	132548911	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcgcacttccgagcaacttTtcgacttgagctcggcagcc	10	14	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132548911	C	C	132548911	3	2	102	1	0	0	0	0	1	0	0	0	6665	1841	64	5	1623	5	GPC4	23	132548911	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	75568	132548911	22721649	1703	100916											
DDX26B	203522	broad.mit.edu	37	chrX	134680837	134680837	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaatatttaatgtttctgaAggaaaaattcagagcataga	8	4	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134680837	T	T	134680837	1	4	102	0	1	0	0	0	0	0	0	0	4386	87	3	5		5	DDX26B	23	134680837	Intron	SNP	A	TCGA-38-4631-01A-01D-1753-08	2131926	134680837	20589723	1704	100917											
SLC9A6	10479	broad.mit.edu	37	chrX	135106567	135106567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatgatgttcagcaccaCgcttctgattgtgtttttta	8	8	2	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135106567	A	A	135106567	3	1	102	1	0	0	0	0	1	0	0	0	14832	536	19	3	1587	3	SLC9A6	23	135106567	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	425730	135106567	20163993	1705	100918											
GPR112	139378	broad.mit.edu	37	chrX	135443691	135443691	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggctattaaccaaccctacgGagacagcccaaaccagatgc	8	14	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135443691	C	C	135443691	3	2	102	1	0	0	0	0	1	0	0	0	6694	1175	41	4	7256	4	GPR112	23	135443691	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	337124	135443691	19826869	1706	100919											
BRS3	680	broad.mit.edu	37	chrX	135570363	135570363	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctctgtggtttctaacgaTaacacaaataaaggatggag	10	6	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135570363	C	C	135570363	2	2	102	1	0	0	0	0	0	0	0	1	1531	1403	49	5		5	BRS3	23	135570363	Silent	SNP	T	TCGA-38-4631-01A-01D-1753-08	126672	135570363	19700197	1707	100920											
RBMX	27316	broad.mit.edu	37	chrX	135958976	135958976	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgggttcaagcaattctCctgcctcagcctcccgagta	8	15	3	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135958976	T	T	135958976	1	4	102	0	1	0	0	0	0	0	0	0	13259	870	30	4		4	RBMX	23	135958976	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	388613	135958976	19311584	1708	100921											
MCF2	4168	broad.mit.edu	37	chrX	138699973	138699973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcaagaaggatacattgCcaaaaatacaatttgatgtc	8	6	0	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138699973	A	A	138699973	1	1	102	0	1	0	0	0	0	0	0	0	9471	754	26	3		3	MCF2	23	138699973	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	2740997	138699973	16570587	1709	100922											
ATP11C	286410	broad.mit.edu	37	chrX	138850587	138850587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatattcctgatgttctgtCcatgctctgaaaaagagaaa	7	9	2	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138850587	A	A	138850587	3	1	102	1	0	0	0	0	1	0	0	0	1125	856	30	3	1273	3	ATP11C	23	138850587	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	150614	138850587	16419973	1710	100923											
MAGEC3	139081	broad.mit.edu	37	chrX	140985492	140985492	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccctagtgcctttccatcCtggtacatggatgctttgaa	8	11	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140985492	G	G	140985492	2	3	102	1	0	0	0	0	0	0	0	1	9274	668	24	4		4	MAGEC3	23	140985492	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	2134905	140985492	14285068	1711	100924											
MAGEC1	9947	broad.mit.edu	37	chrX	140992888	140992888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcagctgaggccactgGcactgtccctctctccctca	7	17	3	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140992888	T	T	140992888	1	4	102	0	1	0	0	0	0	0	0	0	9272	1218	42	3		3	MAGEC1	23	140992888	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	7396	140992888	14277672	1712	100925											
MAGEC1	9947	broad.mit.edu	37	chrX	140994985	140994985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactactttcctcagagcCctcctcagggggaggactcc	9	16	3	1	rs150321883		TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140994985	A	A	140994985	3	1	102	1	0	0	0	0	1	0	0	0	9272	623	22	2	1801	2	MAGEC1	23	140994985	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	2097	140994985	14275575	1713	100926											
MAGEC1	9947	broad.mit.edu	37	chrX	140996472	140996472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggccatgctaaagaatacCgtccctattacctttccatc	5	13	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140996472	A	A	140996472	2	1	102	1	0	0	0	0	0	0	0	1	9272	639	23	1		1	MAGEC1	23	140996472	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	1487	140996472	14274088	1714	100927											
FMR1	2332	broad.mit.edu	37	chrX	147011477	147011477	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatttctaggtgtgccaaaGaggcggcacataaggatttt	11	6	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147011477	T	T	147011477	4	4	102	1	0	0	0	0	0	1	0	0	6018	943	33	3	452	3	FMR1	23	147011477	Nonsense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	6015005	147011477	8259083	1715	100928											
AFF2	2334	broad.mit.edu	37	chrX	147744373	147744373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccagtattcacaagcagCtctcatttaccttaatgagc	5	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147744373	T	T	147744373	1	4	102	0	1	0	0	0	0	0	0	0	357	812	28	4		4	AFF2	23	147744373	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	732896	147744373	7526187	1716	100929											
MAGEA11	4110	broad.mit.edu	37	chrX	148798268	148798268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctggtgtaccggcaggtGcccggcactgatcctgcatg	13	13	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148798268	T	T	148798268	2	4	102	1	0	0	0	0	0	0	0	1	9253	1306	46	3		3	MAGEA11	23	148798268	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	1053895	148798268	6472292	1717	100930											
MAGEA11	4110	broad.mit.edu	37	chrX	148798492	148798492	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccaatgcatgcttcagGgccacacccagcagtttccc	10	15	1	0	rs73606281	by1000genomes	TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148798492	T	T	148798492	1	4	102	0	1	0	0	0	0	0	0	0	9253	1247	43	2		2	MAGEA11	23	148798492	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	224	148798492	6472068	1718	100931											
HSFX2	100130086	broad.mit.edu	37	chrX	148802058	148802058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccggcaggtggtgccccGtgtgaggaacactgcaacgg	16	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148802058	T	T	148802058	1	4	102	0	1	0	0	0	0	0	0	0	7468	1160	40	3		3	HSFX2	23	148802058	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	3566	148802058	6468502	1719	100932											
CD99L2	83692	broad.mit.edu	37	chrX	149962324	149962324	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaattcagaaaatgattcCcagttccacttaagaatgcc	5	10	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149962324	G	G	149962324	1	3	102	0	1	0	0	0	0	0	0	0	3081	638	22	4		4	CD99L2	23	149962324	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	1160266	149962324	5308236	1720	100933											
CD99L2	83692	broad.mit.edu	37	chrX	149983522	149983522	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatcaataccaacaatgggTtaagacaaagagacttatat	7	6	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149983522	A	A	149983522	1	1	102	0	1	0	0	0	0	0	0	0	3081	1740	60	5		5	CD99L2	23	149983522	Intron	SNP	T	TCGA-38-4631-01A-01D-1753-08	21198	149983522	5287038	1721	100934											
PASD1	139135	broad.mit.edu	37	chrX	150832785	150832785	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccagtggatccagaggacTcagtggacctgggggctgct	15	10	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150832785	A	A	150832785	3	1	102	1	0	0	0	0	1	0	0	0	11565	1551	54	5	1074	5	PASD1	23	150832785	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	849263	150832785	4437775	1722	100935											
MAGEA4	4103	broad.mit.edu	37	chrX	151092781	151092781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaattgcaatggagggcgaCagcgcctctgaggaggaaat	14	8	1	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151092781	A	A	151092781	3	1	102	1	0	0	0	0	1	0	0	0	9258	477	17	3	647	3	MAGEA4	23	151092781	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	259996	151092781	4177779	1723	100936											
NSDHL	50814	broad.mit.edu	37	chrX	152027482	152027482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggggaaggctggagtgaGtgctgtcaggagcacgtgat	18	5	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152027482	T	T	152027482	1	4	102	0	1	0	0	0	0	0	0	0	10765	1044	36	3		3	NSDHL	23	152027482	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	934701	152027482	3243078	1724	100937											
NSDHL	50814	broad.mit.edu	37	chrX	152031055	152031055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagggcaacaaagggatgcCcctgattctctttcatacag	10	11	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152031055	A	A	152031055	1	1	102	0	1	0	0	0	0	0	0	0	10765	638	22	2		2	NSDHL	23	152031055	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	3573	152031055	3239505	1725	100938											
ATP2B3	492	broad.mit.edu	37	chrX	152818574	152818574	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacatggtgaggaagatcatCgagccgatggcttgcgatgg	16	7	1	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152818574	A	A	152818574	2	1	102	1	0	0	0	0	0	0	0	1	1145	874	31	3		3	ATP2B3	23	152818574	Silent	SNP	C	TCGA-38-4631-01A-01D-1753-08	787519	152818574	2451986	1726	100939											
SSR4	6748	broad.mit.edu	37	chrX	153063479	153063479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctccccacccccacaCgccaggcacccctgacccca	4	27	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153063479	A	A	153063479	1	1	102	0	1	0	0	0	0	0	0	0	15311	551	19	3		3	SSR4	23	153063479	Intron	SNP	C	TCGA-38-4631-01A-01D-1753-08	244905	153063479	2207081	1727	100940											
L1CAM	3897	broad.mit.edu	37	chrX	153137773	153137773	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacacccagctcttccttGggtttgaagtggacaccatc	9	13	2	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153137773	T	T	153137773	2	4	102	1	0	0	0	0	0	0	0	1	8660	1335	47	2		2	L1CAM	23	153137773	Silent	SNP	G	TCGA-38-4631-01A-01D-1753-08	74294	153137773	2132787	1728	100941											
AVPR2	554	broad.mit.edu	37	chrX	153170406	153170406	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccgtctgtctgaccatcCctctcaatcttccctgccca	4	19	4	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153170406	A	A	153170406	1	1	102	0	1	0	0	0	0	0	0	0	1238	638	22	2		2	AVPR2	23	153170406	5'Flank	SNP	C	TCGA-38-4631-01A-01D-1753-08	32633	153170406	2100154	1729	100942											
HCFC1	3054	broad.mit.edu	37	chrX	153220719	153220719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagacgaactgcacttggGtgggctgggggtgtccccca	15	12	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153220719	T	T	153220719	3	4	102	1	0	0	0	0	1	0	0	0	7057	1261	44	3	3016	3	HCFC1	23	153220719	Missense_Mutation	SNP	G	TCGA-38-4631-01A-01D-1753-08	50313	153220719	2049841	1730	100943											
TKTL1	8277	broad.mit.edu	37	chrX	153539266	153539266	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggcctttgcttcctacTacagtctggacaatcttgtg	8	11	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153539266	G	G	153539266	3	3	102	1	0	0	0	0	1	0	0	0	16058	1522	53	5	444	5	TKTL1	23	153539266	Missense_Mutation	SNP	T	TCGA-38-4631-01A-01D-1753-08	318547	153539266	1731294	1731	100944											
RPL10	6134	broad.mit.edu	37	chrX	153631968	153631968	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgttttgtgtgacctggGaggacaaagggatgggcagc	17	6	0	1			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153631968	A	A	153631968	1	1	102	0	1	0	0	0	0	0	0	0	13665	1189	41	4		4	RPL10	23	153631968	3'UTR	SNP	G	TCGA-38-4631-01A-01D-1753-08	92702	153631968	1638592	1732	100945											
GDI1	2664	broad.mit.edu	37	chrX	153667261	153667261	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggggtgatagggaagacccGaggacggtcaggctccagag	19	8	1	3			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153667261	T	T	153667261	1	4	102	0	1	0	0	0	0	0	0	0	6384	1073	37	3		3	GDI1	23	153667261	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	35293	153667261	1603299	1733	100946											
MTCP1	4515	broad.mit.edu	37	chrX	154293943	154293943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagttgttatccatgtagCgctcctccgggtagagttgc	13	9	0	2			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154293943	A	A	154293943	3	1	102	1	0	0	0	0	1	0	0	0	10009	768	27	3	104	3	MTCP1	23	154293943	Missense_Mutation	SNP	C	TCGA-38-4631-01A-01D-1753-08	626682	154293943	976617	1734	100947											
CLIC2	1193	broad.mit.edu	37	chrX	154507270	154507270	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgtgtgggtaaattcttcAcgggcataggcattgtggag	14	7	2	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154507270	G	G	154507270	2	3	102	1	0	0	0	0	0	0	0	1	3558	146	6	5		5	CLIC2	23	154507270	Silent	SNP	A	TCGA-38-4631-01A-01D-1753-08	213327	154507270	763290	1735	100948											
CLIC2	1193	broad.mit.edu	37	chrX	154508365	154508365	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatataataataccgcactgGaaggtcactatgctttgtgc	8	8	1	0			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154508365	T	T	154508365	1	4	102	0	1	0	0	0	0	0	0	0	3558	1189	41	3		3	CLIC2	23	154508365	Intron	SNP	G	TCGA-38-4631-01A-01D-1753-08	1095	154508365	762195	1736	100949											
UBE4B	10277	broad.mit.edu	37	chr1	10207112	10207112	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttatggccttctcattcAgctgctgctccgcatcctgg	8	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10207112	T	T	10207112	3	4	103	1	0	0	0	0	1	0	0	0	17009	188	7	5	2629	5	UBE4B	1	10207112	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08		10207112	239043509	1	100950											
KIF1B	23095	broad.mit.edu	37	chr1	10355764	10355764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggacatagtgctgagcGgggctcacattaaagaagag	14	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10355764	T	T	10355764	3	4	103	1	0	0	0	0	1	0	0	0	8354	1116	39	1	1641	1	KIF1B	1	10355764	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	148652	10355764	238894857	2	100951											
MTHFR	4524	broad.mit.edu	37	chr1	11853947	11853947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagaggggggcaccccGtgcctccctaccacaccttc	10	17	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11853947	A	A	11853947	1	1	103	0	1	0	0	0	0	0	0	0	10025	1160	40	4		4	MTHFR	1	11853947	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1498183	11853947	237396674	3	100952											
CLCN6	1185	broad.mit.edu	37	chr1	11879386	11879388	+	Intron	DEL	CTT	-	-													gctggagaagggatctcctcCttctgcgcttttctgctgtg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11879388	-	-	11879386	6	5	103	0	1	1	0	1	0	0	0	0	3498	696	24	0		0	CLCN6	1	11879386	Intron	DEL	CTT	TCGA-38-4632-01A-01D-1753-08	25439	11879386	237371235	4	100953											
CASP9	842	broad.mit.edu	37	chr1	15844850	15844850	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtctccagatctatgatcAgctgcctggcctgatcccgc	10	14	3	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15844850	C	C	15844850	3	2	103	1	0	0	0	0	1	0	0	0	2705	188	7	5	1109	5	CASP9	1	15844850	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	3965464	15844850	233405771	5	100954											
UBR4	23352	broad.mit.edu	37	chr1	19486549	19486549	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctagcacattttgggatcTcaataaatttgttggttccc	7	8	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19486549	C	C	19486549	1	2	103	0	1	0	0	0	0	0	0	0	17030	1566	54	5		5	UBR4	1	19486549	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	3641699	19486549	229764072	6	100955											
NBL1	4681	broad.mit.edu	37	chr1	19983389	19983389	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcccgggccacgaggagGtgcccagggtggacaagctg	18	11	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19983389	A	A	19983389	3	1	103	1	0	0	0	0	1	0	0	0	10284	1261	44	4	432	4	NBL1	1	19983389	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	496840	19983389	229267232	7	100956											
EPHA8	2046	broad.mit.edu	37	chr1	22902862	22902870	+	In_Frame_Del	DEL	CCTGCGCGA	-	-													tatgctgagatcaagtttacCctgcgcgactgcaacagcat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22902870	-	-	22902862	7	5	103	1	0	1	0	1	0	0	0	0	5215	610	22	0	322	0	EPHA8	1	22902862	In_Frame_Del	DEL	CCTGCGCGA	TCGA-38-4632-01A-01D-1753-08	2919473	22902862	226347759	8	100957											
HNRNPR	10236	broad.mit.edu	37	chr1	23637569	23637569	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcttcatacctagcaaagTagagaagggagaaaagaaaa	9	5	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23637569	C	C	23637569	1	2	103	0	1	0	0	0	0	0	0	0	7339	1653	57	5		5	HNRNPR	1	23637569	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	734707	23637569	225613052	9	100958											
RAB42	115273	broad.mit.edu	37	chr1	28920492	28920492	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggcctttgacaccctcGctgatgctatccagcaggcc	9	16	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28920492	A	A	28920492	3	1	103	1	0	0	0	0	1	0	0	0	13052	1087	38	4	183	4	RAB42	1	28920492	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5282923	28920492	220330129	10	100959											
CSMD2	114784	broad.mit.edu	37	chr1	34033332	34033332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccccattgatgtgtccGttgacaatgggctcaggagt	11	10	2	2	rs140959425		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34033332	T	T	34033332	3	4	103	1	0	0	0	0	1	0	0	0	3979	1136	40	3	2355	3	CSMD2	1	34033332	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5112840	34033332	215217289	11	100960											
SFPQ	6421	broad.mit.edu	37	chr1	35652807	35652807	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatttcacacttacctcCcatgttcattgctcctccgc	3	15	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35652807	A	A	35652807	4	1	103	1	0	0	0	0	0	1	0	0	14273	632	22	2	274	2	SFPQ	1	35652807	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1619475	35652807	213597814	12	100961											
C1orf122	127687	broad.mit.edu	37	chr1	38274837	38274837	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagtaaaggggccagtcttCactggcagtggctggtactt	13	9	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38274837	T	T	38274837	1	4	103	0	1	0	0	0	0	0	0	0	2010	841	29	4		4	C1orf122	1	38274837	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	2622030	38274837	210975784	13	100962											
RLF	6018	broad.mit.edu	37	chr1	40701600	40701600	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accagaagatttagaagttaGacgagcctgtcagcttacag	10	8	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40701600	A	A	40701600	3	1	103	1	0	0	0	0	1	0	0	0	13500	942	33	4	1256	4	RLF	1	40701600	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2426763	40701600	208549021	14	100963											
ZMPSTE24	10269	broad.mit.edu	37	chr1	40758147	40758147	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcctaacagtcctaagcCgcagatttgagtttcaagct	8	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40758147	T	T	40758147	3	4	103	1	0	0	0	0	1	0	0	0	17824	652	23	4	1272	4	ZMPSTE24	1	40758147	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	56547	40758147	208492474	15	100964											
ZNF691	51058	broad.mit.edu	37	chr1	43316702	43316702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggggtaagccttggagaGtggatgactcagagggttct	17	5	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43316702	T	T	43316702	3	4	103	1	0	0	0	0	1	0	0	0	18223	1029	36	3	75	3	ZNF691	1	43316702	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2558555	43316702	205933919	16	100965											
ERI3	79033	broad.mit.edu	37	chr1	44804524	44804524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaacaatgtacccagttcTctccagagacttctcaggtc	7	12	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44804524	A	A	44804524	1	1	103	0	1	0	0	0	0	0	0	0	5271	1566	54	5		5	ERI3	1	44804524	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1487822	44804524	204446097	17	100966											
ZCCHC11	23318	broad.mit.edu	37	chr1	52947418	52947418	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaaatgtttgagcagagttCtctgcaagagcaaactatat	8	6	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52947418	G	G	52947418	1	3	103	0	1	0	0	0	0	0	0	0	17706	928	32	4		4	ZCCHC11	1	52947418	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	8142894	52947418	196303203	18	100967											
CYB5RL	606495	broad.mit.edu	37	chr1	54640559	54640560	+	Intron	DNP	CC	AA	AA													ggtccttagtgttcacacagCcagctctcctctgcaaaatg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	54640560	AA	AA	54640559	1	1	103	0	1	0	0	0	0	0	0	0	4163	754	26	3		3	CYB5RL	1	54640559	Intron	DNP	CC	TCGA-38-4632-01A-01D-1753-08	1693141	54640559	194610062	19	100968											
DAB1	1600	broad.mit.edu	37	chr1	58514585	58514585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacttccatttttccaaCtgttaaaaataatctcttag	2	9	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514585	A	A	58514585	1	1	103	0	1	0	0	0	0	0	0	0	4250	580	20	3		3	DAB1	1	58514585	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3874026	58514585	190736036	20	100969											
TM2D1	83941	broad.mit.edu	37	chr1	62175007	62175007	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtaatgtacttacacatttCggcaagatatgggcttgaaa	9	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62175007	T	T	62175007	3	4	103	1	0	0	0	0	1	0	0	0	16086	884	31	4	298	4	TM2D1	1	62175007	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3660422	62175007	187075614	21	100970											
C1orf141	400757	broad.mit.edu	37	chr1	67559010	67559010	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttctttagtttatcaTctacagttgtgtggcccgct	7	9	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67559010	A	A	67559010	3	1	103	1	0	0	0	0	1	0	0	0	2021	1435	50	5	325	5	C1orf141	1	67559010	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	5384003	67559010	181691611	22	100971											
IL23R	149233	broad.mit.edu	37	chr1	67724401	67724401	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatttcaaattttctgcctGagggaagccatctcagcaat	7	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67724401	A	A	67724401	3	1	103	1	0	0	0	0	1	0	0	0	7746	1291	45	4	1518	4	IL23R	1	67724401	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	165391	67724401	181526220	23	100972											
WLS	79971	broad.mit.edu	37	chr1	68628101	68628101	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcctacagagtgtagaccCtctgcacgcccagggatcgc	10	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68628101	T	T	68628101	1	4	103	0	1	0	0	0	0	0	0	0	17503	696	24	4		4	WLS	1	68628101	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	903700	68628101	180622520	24	100973											
LRRC7	57554	broad.mit.edu	37	chr1	70385469	70385469	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgcggcggacgggggagatGagcgggacagtgttcacgga	21	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70385469	T	T	70385469	1	4	103	0	1	0	0	0	0	0	0	0	9107	1305	45	3		3	LRRC7	1	70385469	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1757368	70385469	178865152	25	100974											
C1orf173	127254	broad.mit.edu	37	chr1	75102097	75102097	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggctgcatatttcctGgagcagtatatggtcgaggg	15	6	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75102097	C	C	75102097	3	2	103	1	0	0	0	0	1	0	0	0	2034	1348	47	4	4158	4	C1orf173	1	75102097	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4716628	75102097	174148524	26	100975											
RABGGTB	5876	broad.mit.edu	37	chr1	76251970	76251970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagacatggtaagtgtgaGtttagcgctgctgtccggat	14	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76251970	T	T	76251970	1	4	103	0	1	0	0	0	0	0	0	0	13076	1044	36	3		3	RABGGTB	1	76251970	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1149873	76251970	172998651	27	100976											
USP33	23032	broad.mit.edu	37	chr1	78167023	78167023	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaaaaacaaataatttaCcaaaaaaaaatttttcagtc	1	6	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78167023	A	A	78167023	1	1	103	0	1	0	0	0	0	0	0	0	17191	522	18	3		3	USP33	1	78167023	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1915053	78167023	171083598	28	100977											
USP33	23032	broad.mit.edu	37	chr1	78189129	78189129	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggagatgcagactgagCtaggattgaaaaacattaaa	10	5	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78189129	A	A	78189129	5	1	103	1	0	0	0	0	0	0	1	0	17191	811	28	3	1523	3	USP33	1	78189129	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	22106	78189129	171061492	29	100978											
LPHN2	23266	broad.mit.edu	37	chr1	81892935	81892935	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggaggtggtggcagcGgaaatagttatgaaggaggt	19	3	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81892935	A	A	81892935	1	1	103	0	1	0	0	0	0	0	0	0	9003	1131	39	4		4	LPHN2	1	81892935	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3703806	81892935	167357686	30	100979											
TTLL7	79739	broad.mit.edu	37	chr1	84417625	84417625	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctttgataaggtaattcTgtattcaaatccaggggaga	11	5	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84417625	A	A	84417625	2	1	103	1	0	0	0	0	0	0	0	1	16858	1567	55	5		5	TTLL7	1	84417625	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	2524690	84417625	164832996	31	100980											
LRRC8C	84230	broad.mit.edu	37	chr1	90178352	90178352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgaatgtctctcaagcaGttgccagtaccactccactg	7	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90178352	T	T	90178352	3	4	103	1	0	0	0	0	1	0	0	0	9110	1029	36	3	229	3	LRRC8C	1	90178352	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5760727	90178352	159072269	32	100981											
LRRC8D	55144	broad.mit.edu	37	chr1	90399291	90399291	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacagcatgcgaagactcaGaggaaaacaagcagagaata	11	7	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90399291	T	T	90399291	4	4	103	1	0	0	0	0	0	1	0	0	9111	943	33	3	666	3	LRRC8D	1	90399291	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	220939	90399291	158851330	33	100982											
TGFBR3	7049	broad.mit.edu	37	chr1	92195261	92195261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggctcccttccctcctgcGtaggggagggtgtaggacgg	16	11	0	0	rs114504921	by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92195261	A	A	92195261	1	1	103	0	1	0	0	0	0	0	0	0	15946	1160	40	4		4	TGFBR3	1	92195261	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1795970	92195261	157055360	34	100983											
BRDT	676	broad.mit.edu	37	chr1	92470181	92470181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagaaaatcagaggtctGtaatttactggattaaagga	9	5	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92470181	T	T	92470181	1	4	103	0	1	0	0	0	0	0	0	0	1517	1392	48	3		3	BRDT	1	92470181	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	274920	92470181	156780440	35	100984											
DR1	1810	broad.mit.edu	37	chr1	93812179	93812179	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggagtttttaaaagccgGggcgcgagaaacaggaaggt	17	5	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93812179	T	T	93812179	1	4	103	0	1	0	0	0	0	0	0	0	4792	1247	43	2		2	DR1	1	93812179	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	1341998	93812179	155438442	36	100985											
DPYD	1806	broad.mit.edu	37	chr1	98058934	98058934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcaatggagagtgacagGcgcacattcctgaatgatga	13	7	0	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98058934	T	T	98058934	3	4	103	1	0	0	0	0	1	0	0	0	4785	1203	42	3	2165	3	DPYD	1	98058934	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4246755	98058934	151191687	37	100986											
SNX7	51375	broad.mit.edu	37	chr1	99157099	99157099	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgccttagccattgccAgaaaagtttatagtaaaagg	8	6	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99157099	G	G	99157099	2	3	103	1	0	0	0	0	0	0	0	1	15021	175	7	5		5	SNX7	1	99157099	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	1098165	99157099	150093522	38	100987											
COL11A1	1301	broad.mit.edu	37	chr1	103573670	103573670	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggaaggtcaatgcgAgggttgttacggtgaaatcc	16	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103573670	T	T	103573670	3	4	103	1	0	0	0	0	1	0	0	0	3699	304	11	5	5780	5	COL11A1	1	103573670	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	4416571	103573670	145676951	39	100988											
NTNG1	22854	broad.mit.edu	37	chr1	107950604	107950604	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagactcaggtgcaattccTtagataatcatcattcagga	7	9	4	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107950604	C	C	107950604	1	2	103	0	1	0	0	0	0	0	0	0	10799	1624	56	5		5	NTNG1	1	107950604	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	4376934	107950604	141300017	40	100989											
ATP5F1	515	broad.mit.edu	37	chr1	111998816	111998816	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtactaggtgtaatggtctAtggaattaaaaaatatggtc	10	3	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111998816	G	G	111998816	3	3	103	1	0	0	0	0	1	0	0	0	1156	449	16	5	346	5	ATP5F1	1	111998816	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	4048212	111998816	137251805	41	100990											
DENND2C	163259	broad.mit.edu	37	chr1	115079437	115079437	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacaatcgagaatcatgtGggggttcagaggtttgatga	13	5	2	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115079437	T	T	115079437	1	4	103	0	1	0	0	0	0	0	0	0	4470	1363	47	2		2	DENND2C	1	115079437	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3080621	115079437	134171184	42	100991											
NRAS	4893	broad.mit.edu	37	chr1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcactgtactcttctTgtccagctgtatccagtatg	8	11	3	0	rs11554290		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115256529	A	A	115256529	3	1	103	1	0	0	0	0	1	0	0	0	10735	1812	63	5	399	5	NRAS	1	115256529	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	177092	115256529	133994092	43	100992											
TBX15	6913	broad.mit.edu	37	chr1	119467342	119467342	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgtctcatccaggtgTctccagaagctagagaatca	8	13	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119467342	A	A	119467342	3	1	103	1	0	0	0	0	1	0	0	0	15774	1667	58	5	1208	5	TBX15	1	119467342	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	4210813	119467342	129783279	44	100993											
PDE4DIP	9659	broad.mit.edu	37	chr1	144859668	144859668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacctgaccctaaggagCatggaccaggcagattacac	9	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144859668	A	A	144859668	1	1	103	0	1	0	0	0	0	0	0	0	11737	725	25	3		3	PDE4DIP	1	144859668	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	25392326	144859668	104390953	45	100994											
ANKRD35	148741	broad.mit.edu	37	chr1	145561885	145561885	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggagggagccctggggactCcccgtgctgaggcagcagca	17	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145561885	G	G	145561885	3	3	103	1	0	0	0	0	1	0	0	0	664	855	30	4	1611	4	ANKRD35	1	145561885	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	702217	145561885	103688736	46	100995											
MTMR11	10903	broad.mit.edu	37	chr1	149907354	149907354	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacaaccctagagagagttCccactgattatcaatgatac	6	11	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149907354	A	A	149907354	1	1	103	0	1	0	0	0	0	0	0	0	10034	870	30	3		3	MTMR11	1	149907354	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4345469	149907354	99343267	47	100996											
ANP32E	81611	broad.mit.edu	37	chr1	150199078	150199078	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcctcatatccttcCggtggaccagcttcattttc	5	15	3	0	rs144321821		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150199078	G	G	150199078	2	3	103	1	0	0	0	0	0	0	0	1	709	639	23	4		4	ANP32E	1	150199078	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	291724	150199078	99051543	48	100997											
TCHHL1	126637	broad.mit.edu	37	chr1	152060431	152060431	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctcatcttgcttggattaTaaagaaagggtgagttggaa	12	4	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152060431	C	C	152060431	1	2	103	0	1	0	0	0	0	0	0	0	15823	1421	49	5		5	TCHHL1	1	152060431	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1861353	152060431	97190190	49	100998											
FLG2	388698	broad.mit.edu	37	chr1	152326607	152326608	+	Missense_Mutation	DNP	CC	AA	AA													ttgttgagattcaccctggcCcaagccagttgattgacctg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152326608	AA	AA	152326607	3	1	103	1	0	0	0	0	1	0	0	0	5980	623	22	2	3524	2	FLG2	1	152326607	Missense_Mutation	DNP	CC	TCGA-38-4632-01A-01D-1753-08	266176	152326607	96924014	50	100999											
LCE2B	26239	broad.mit.edu	37	chr1	152659201	152659201	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactgatgtgactgtatgatCtaaatatcattcttcttcta	5	7	5	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152659201	G	G	152659201	1	3	103	0	1	0	0	0	0	0	0	0	8738	928	32	4		4	LCE2B	1	152659201	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	332594	152659201	96591420	51	101000											
NUP210L	91181	broad.mit.edu	37	chr1	154076748	154076748	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaagtcttaggaggaggaGaagcaagatggccaaataga	13	4	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154076748	T	T	154076748	1	4	103	0	1	0	0	0	0	0	0	0	10856	957	33	3		3	NUP210L	1	154076748	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1417547	154076748	95173873	52	101001											
LMNA	4000	broad.mit.edu	37	chr1	156104873	156104873	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagatggtggcagggagcTcagggtggcccaggacctgg	20	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156104873	G	G	156104873	1	3	103	0	1	0	0	0	0	0	0	0	8922	1566	54	5		5	LMNA	1	156104873	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2028125	156104873	93145748	53	101002											
RHBG	57127	broad.mit.edu	37	chr1	156347049	156347049	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggattgtgggctatggcTagagcagcccccaagtgccc	13	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156347049	C	C	156347049	1	2	103	0	1	0	0	0	0	0	0	0	13433	1537	53	5		5	RHBG	1	156347049	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	242176	156347049	92903572	54	101003											
FCRL3	115352	broad.mit.edu	37	chr1	157670161	157670161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctgtctctgaaccccaaGtagaagcagagatagaagct	9	9	2	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157670161	T	T	157670161	1	4	103	0	1	0	0	0	0	0	0	0	5853	1044	36	3		3	FCRL3	1	157670161	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1323112	157670161	91580460	55	101004											
CD1D	912	broad.mit.edu	37	chr1	158152106	158152106	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgaagaagcaaggtcagCctgccttccttactccctgc	8	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158152106	T	T	158152106	1	4	103	0	1	0	0	0	0	0	0	0	3007	754	26	4		4	CD1D	1	158152106	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	481945	158152106	91098515	56	101005											
CD1A	909	broad.mit.edu	37	chr1	158224560	158224561	+	Intron	DEL	TC	-	-													agttgggtggtgggtgaaggTctctctctctctctctgtgt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158224561	-	-	158224560	6	5	103	0	1	1	0	1	0	0	0	0	3004	1682	58	0		0	CD1A	1	158224560	Intron	DEL	TC	TCGA-38-4632-01A-01D-1753-08	72454	158224560	91026061	57	101006											
CD1B	910	broad.mit.edu	37	chr1	158300429	158300429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaatatgaggtgtgatgGtgtgaagctggagtgagaga	17	2	0	6			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158300429	T	T	158300429	1	4	103	0	1	0	0	0	0	0	0	0	3005	1276	44	3		3	CD1B	1	158300429	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	75869	158300429	90950192	58	101007											
SPTA1	6708	broad.mit.edu	37	chr1	158584986	158584986	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgcatccctccctgctcTggccacacgccctcaatact	5	20	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158584986	A	A	158584986	1	1	103	0	1	0	0	0	0	0	0	0	15234	1595	55	5		5	SPTA1	1	158584986	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	284557	158584986	90665635	59	101008											
SPTA1	6708	broad.mit.edu	37	chr1	158590359	158590359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctttaaatatctgcagGgccaccaatctaaaagggca	8	10	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158590359	T	T	158590359	1	4	103	0	1	0	0	0	0	0	0	0	15234	1247	43	2		2	SPTA1	1	158590359	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	5373	158590359	90660262	60	101009											
SPTA1	6708	broad.mit.edu	37	chr1	158592846	158592846	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccagcaactgttcccagCgcttcagcagagcggcataa	9	14	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158592846	T	T	158592846	3	4	103	1	0	0	0	0	1	0	0	0	15234	768	27	4	1252	4	SPTA1	1	158592846	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2487	158592846	90657775	61	101010											
SPTA1	6708	broad.mit.edu	37	chr1	158595971	158595971	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgaggaagtcaccaaggtCtgcaccattgccattggtct	11	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158595971	G	G	158595971	3	3	103	1	0	0	0	0	1	0	0	0	15234	913	32	4	1428	4	SPTA1	1	158595971	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3125	158595971	90654650	62	101011											
SPTA1	6708	broad.mit.edu	37	chr1	158617448	158617448	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccattttctgtctctgcagGtcctcagtggcatctggatg	10	11	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158617448	A	A	158617448	2	1	103	1	0	0	0	0	0	0	0	1	15234	1252	44	4		4	SPTA1	1	158617448	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	21477	158617448	90633173	63	101012											
SPTA1	6708	broad.mit.edu	37	chr1	158646146	158646146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgactccccctggcaaagCtttgtgggagaggtataaaa	11	9	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158646146	A	A	158646146	1	1	103	0	1	0	0	0	0	0	0	0	15234	812	28	3		3	SPTA1	1	158646146	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	28698	158646146	90604475	64	101013											
OR6K6	128371	broad.mit.edu	37	chr1	158724939	158724939	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatccccaagatgctgtccTgcctaatcagtgagcagaag	9	13	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158724939	A	A	158724939	3	1	103	1	0	0	0	0	1	0	0	0	11298	1580	55	5	336	5	OR6K6	1	158724939	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	78793	158724939	90525682	65	101014											
OR6N1	128372	broad.mit.edu	37	chr1	158736121	158736121	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatacctatcgtaggccaTagctgtcaggagatagcact	9	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158736121	C	C	158736121	3	2	103	1	0	0	0	0	1	0	0	0	11300	1406	49	5	589	5	OR6N1	1	158736121	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	11182	158736121	90514500	66	101015											
MNDA	4332	broad.mit.edu	37	chr1	158817415	158817415	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgtatgatctgtacctgtCattcctgtcgtgcatattgc	8	10	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158817415	A	A	158817415	1	1	103	0	1	0	0	0	0	0	0	0	9770	841	29	3		3	MNDA	1	158817415	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	81294	158817415	90433206	67	101016											
SLAMF8	56833	broad.mit.edu	37	chr1	159799686	159799686	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattacagttactggtgcccAagtgctgagcaaagtcgggg	13	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159799686	T	T	159799686	3	4	103	1	0	0	0	0	1	0	0	0	14483	130	5	5	77	5	SLAMF8	1	159799686	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	982271	159799686	89450935	68	101017											
ITLN1	55600	broad.mit.edu	37	chr1	160851656	160851656	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctccagcccatcccacaCccctaccttccagccatccc	2	24	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160851656	T	T	160851656	1	4	103	0	1	0	0	0	0	0	0	0	7980	522	18	4		4	ITLN1	1	160851656	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1051970	160851656	88398965	69	101018											
FCGR3A	2214	broad.mit.edu	37	chr1	161518430	161518430	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctcgagcaccctgtaccAttgaggctccaggaacacca	8	15	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161518430	G	G	161518430	3	3	103	1	0	0	0	0	1	0	0	0	5841	217	8	5	676	5	FCGR3A	1	161518430	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	666774	161518430	87732191	70	101019											
FCGR3B	2215	broad.mit.edu	37	chr1	161600996	161600996	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtccctccacccatctcTgtcacctgccagtttccttt	4	19	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161600996	A	A	161600996	1	1	103	0	1	0	0	0	0	0	0	0	5842	1595	55	5		5	FCGR3B	1	161600996	5'UTR	SNP	T	TCGA-38-4632-01A-01D-1753-08	82566	161600996	87649625	71	101020											
GPA33	10223	broad.mit.edu	37	chr1	167032937	167032937	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttgttcccaattatggtCtctccctcgatgccgcattc	7	13	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167032937	A	A	167032937	3	1	103	1	0	0	0	0	1	0	0	0	6651	912	32	3	522	3	GPA33	1	167032937	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	5431941	167032937	82217684	72	101021											
ADCY10	55811	broad.mit.edu	37	chr1	167794135	167794135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgaggcagaacgcaaaGcagaaagctcaggaacatca	12	8	2	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167794135	T	T	167794135	1	4	103	0	1	0	0	0	0	0	0	0	293	986	34	3		3	ADCY10	1	167794135	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	761198	167794135	81456486	73	101022											
SELP	6403	broad.mit.edu	37	chr1	169586542	169586542	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatttttattctggatggCcactaagtctgtgtagcgat	9	7	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169586542	T	T	169586542	3	4	103	1	0	0	0	0	1	0	0	0	14132	739	26	4	2343	4	SELP	1	169586542	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1792407	169586542	79664079	74	101023											
C1orf112	55732	broad.mit.edu	37	chr1	169798428	169798428	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctactcaaagccgttttCtacagttttgagcagtgttc	7	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169798428	G	G	169798428	3	3	103	1	0	0	0	0	1	0	0	0	2005	912	32	4	1194	4	C1orf112	1	169798428	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	211886	169798428	79452193	75	101024											
C1orf105	92346	broad.mit.edu	37	chr1	172431312	172431312	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttctaaatgagactttcttCttgaggtacaaccaagaaca	7	8	3	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172431312	T	T	172431312	1	4	103	0	1	0	0	0	0	0	0	0	1999	928	32	4		4	C1orf105	1	172431312	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2632884	172431312	76819309	76	101025											
TNR	7143	broad.mit.edu	37	chr1	175372466	175372466	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccagggcacctcagttcCctgcagtcctcgccagtgta	9	17	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175372466	T	T	175372466	2	4	103	1	0	0	0	0	0	0	0	1	16461	622	22	4		4	TNR	1	175372466	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2941154	175372466	73878155	77	101026											
PAPPA2	60676	broad.mit.edu	37	chr1	176525310	176525310	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagcagaggcattcttgGggctatttgaaaaagtttgg	13	6	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176525310	A	A	176525310	1	1	103	0	1	0	0	0	0	0	0	0	11527	1247	43	4		4	PAPPA2	1	176525310	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	1152844	176525310	72725311	78	101027											
PAPPA2	60676	broad.mit.edu	37	chr1	176525707	176525707	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactacctaaggccctacccCgtgggggagcaagaaatcca	10	13	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176525707	A	A	176525707	2	1	103	1	0	0	0	0	0	0	0	1	11527	639	23	1		1	PAPPA2	1	176525707	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	397	176525707	72724914	79	101028											
PAPPA2	60676	broad.mit.edu	37	chr1	176564446	176564446	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcagctggcagctgagcgTccaccaggtccacaattcca	9	15	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176564446	A	A	176564446	3	1	103	1	0	0	0	0	1	0	0	0	11527	1667	58	5	1712	5	PAPPA2	1	176564446	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	38739	176564446	72686175	80	101029											
PAPPA2	60676	broad.mit.edu	37	chr1	176640027	176640027	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctgggagtgccattagaAtctgattaggtctggctctg	14	7	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176640027	C	C	176640027	1	2	103	0	1	0	0	0	0	0	0	0	11527	116	4	5		5	PAPPA2	1	176640027	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	75581	176640027	72610594	81	101030											
ASTN1	460	broad.mit.edu	37	chr1	176915133	176915133	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaaccaaagaacatctcCccaaagagggtctggttcat	8	10	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176915133	A	A	176915133	2	1	103	1	0	0	0	0	0	0	0	1	1068	610	22	2		2	ASTN1	1	176915133	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	275106	176915133	72335488	82	101031											
TDRD5	163589	broad.mit.edu	37	chr1	179558031	179558031	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaagaaacctttggggAgggagacagagatggccgca	17	6	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179558031	T	T	179558031	1	4	103	0	1	0	0	0	0	0	0	0	15855	319	11	5		5	TDRD5	1	179558031	5'Flank	SNP	A	TCGA-38-4632-01A-01D-1753-08	2642898	179558031	69692590	83	101032											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179820017	179820017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcagtgtatcctcaccCtcttgccctgcactggaatg	7	16	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179820017	A	A	179820017	3	1	103	1	0	0	0	0	1	0	0	0	16497	680	24	2	908	2	TOR1AIP2	1	179820017	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	261986	179820017	69430604	84	101033											
CEP350	9857	broad.mit.edu	37	chr1	180006234	180006234	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agataataaaggtatttttgGagttttttagctttctgtgg	10	2	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180006234	A	A	180006234	1	1	103	0	1	0	0	0	0	0	0	0	3284	1189	41	4		4	CEP350	1	180006234	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	186217	180006234	69244387	85	101034											
QSOX1	5768	broad.mit.edu	37	chr1	180158700	180158700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacagtatttccctggccGgcccttagtccagaacttcc	7	17	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180158700	T	T	180158700	3	4	103	1	0	0	0	0	1	0	0	0	12991	1116	39	1	1065	1	QSOX1	1	180158700	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	152466	180158700	69091921	86	101035											
CACNA1E	777	broad.mit.edu	37	chr1	181620470	181620470	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaccatttttctttcttTcagaccaatgatgccttagg	7	9	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181620470	C	C	181620470	1	2	103	0	1	0	0	0	0	0	0	0	2568	1798	62	5		5	CACNA1E	1	181620470	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1461770	181620470	67630151	87	101036											
CACNA1E	777	broad.mit.edu	37	chr1	181763998	181763998	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgggggcttgtatttccAggtggtgacagaccctagct	13	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181763998	T	T	181763998	5	4	103	1	0	0	0	0	0	0	1	0	2568	202	7	5	6075	5	CACNA1E	1	181763998	Splice_Site	SNP	A	TCGA-38-4632-01A-01D-1753-08	143528	181763998	67486623	88	101037											
NMNAT2	23057	broad.mit.edu	37	chr1	183273670	183273670	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatcaggctgatgtccctAaacaggcatgcacagagcag	13	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183273670	C	C	183273670	1	2	103	0	1	0	0	0	0	0	0	0	10594	377	13	5		5	NMNAT2	1	183273670	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1509672	183273670	65976951	89	101038											
TPR	7175	broad.mit.edu	37	chr1	186315207	186315207	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatggcaactaatgacttaGttgaaagaattcaaatcctt	6	6	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186315207	C	C	186315207	1	2	103	0	1	0	0	0	0	0	0	0	16540	1044	36	4		4	TPR	1	186315207	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3041537	186315207	62935414	90	101039											
RGS21	431704	broad.mit.edu	37	chr1	192321432	192321432	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatccatctaaaagataatCaaattctcagtatgtgttta	4	6	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192321432	T	T	192321432	1	4	103	0	1	0	0	0	0	0	0	0	13413	841	29	4		4	RGS21	1	192321432	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	6006225	192321432	56929189	91	101040											
KCNT2	343450	broad.mit.edu	37	chr1	196227561	196227561	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgcggtggttgctgcggtGgtgcccttgttctttggagt	17	7	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196227561	C	C	196227561	3	2	103	1	0	0	0	0	1	0	0	0	8162	1348	47	4	445	4	KCNT2	1	196227561	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3906129	196227561	53023060	92	101041											
KCNT2	343450	broad.mit.edu	37	chr1	196303087	196303087	+	Frame_Shift_Del	DEL	A	-	-													gcaacctctaaaacaggagcAatgctaggtcttcttatttc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196303087	-	-	196303087	7	5	103	1	0	1	0	1	0	0	0	0	8162	126	5	0	1568	0	KCNT2	1	196303087	Frame_Shift_Del	DEL	A	TCGA-38-4632-01A-01D-1753-08	75526	196303087	52947534	93	101042											
KCNT2	343450	broad.mit.edu	37	chr1	196395074	196395074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgcagtacccttcgaacCtgtacatccatttcagtagg	7	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196395074	A	A	196395074	3	1	103	1	0	0	0	0	1	0	0	0	8162	680	24	2	2450	2	KCNT2	1	196395074	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	91987	196395074	52855547	94	101043											
ASPM	259266	broad.mit.edu	37	chr1	197053579	197053579	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttaaaaaaaaaaaaaaagtCtggcattaataaagttcttc	5	4	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197053579	A	A	197053579	1	1	103	0	1	0	0	0	0	0	0	0	1060	928	32	3		3	ASPM	1	197053579	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	658505	197053579	52197042	95	101044											
ASPM	259266	broad.mit.edu	37	chr1	197107879	197107879	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaattaagagaaacgatTatttcttacgatgtttgtct	7	4	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197107879	A	A	197107879	1	1	103	0	1	0	0	0	0	0	0	0	1060	1769	61	5		5	ASPM	1	197107879	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	54300	197107879	52142742	96	101045											
CRB1	23418	broad.mit.edu	37	chr1	197237509	197237509	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgggaccagaccaccaGcaacacaccagaggatgttc	11	13	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197237509	T	T	197237509	1	4	103	0	1	0	0	0	0	0	0	0	3880	986	34	3		3	CRB1	1	197237509	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	129630	197237509	52013112	97	101046											
PTPRC	5788	broad.mit.edu	37	chr1	198725263	198725263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcactgaggggccagaaCattctgtcaatggtcctgca	13	10	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198725263	A	A	198725263	3	1	103	1	0	0	0	0	1	0	0	0	12905	478	17	3	4005	3	PTPRC	1	198725263	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1487754	198725263	50525358	98	101047											
CACNA1S	779	broad.mit.edu	37	chr1	201081551	201081551	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccaatgcccccgccttgggGactaggctggctgaggctgt	14	14	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201081551	A	A	201081551	1	1	103	0	1	0	0	0	0	0	0	0	2573	1189	41	4		4	CACNA1S	1	201081551	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	2356288	201081551	48169070	99	101048											
SHISA4	149345	broad.mit.edu	37	chr1	201860534	201860534	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctcccccatctaggccagGagattccaatgacaggcatc	8	14	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201860534	T	T	201860534	4	4	103	1	0	0	0	0	0	1	0	0	14395	1175	41	3	399	3	SHISA4	1	201860534	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	778983	201860534	47390087	100	101049											
CNTN2	6900	broad.mit.edu	37	chr1	205042200	205042201	+	Missense_Mutation	DNP	TG	CT	CT													aacctccttcccacagatgcTgtaccagaatgacttacacc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	205042201	CT	CT	205042200	3	2	103	1	0	0	0	0	1	0	0	0	3673	1580	55	5	2931	5	CNTN2	1	205042200	Missense_Mutation	DNP	TG	TCGA-38-4632-01A-01D-1753-08	3181666	205042200	44208421	101	101050											
RBBP5	5929	broad.mit.edu	37	chr1	205069466	205069466	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttagtactacaaaacgacTaataaactagggaagaattg	7	7	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205069466	A	A	205069466	1	1	103	0	1	0	0	0	0	0	0	0	13210	1537	53	5		5	RBBP5	1	205069466	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	27266	205069466	44181155	102	101051											
CR1L	1379	broad.mit.edu	37	chr1	207867945	207867945	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgcctccaaatgtggaaaaTggaatattggtatctgacaa	9	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207867945	C	C	207867945	2	2	103	1	0	0	0	0	0	0	0	1	3873	1461	51	5		5	CR1L	1	207867945	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	2798479	207867945	41382676	103	101052											
CD34	947	broad.mit.edu	37	chr1	208061568	208061568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagggtgggatgacctcCccagggtaggggacaggcca	17	9	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208061568	A	A	208061568	1	1	103	0	1	0	0	0	0	0	0	0	3036	638	22	2		2	CD34	1	208061568	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	193623	208061568	41189053	104	101053											
CENPF	1063	broad.mit.edu	37	chr1	214816822	214816822	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatattttcaaaacaaaccAgaacttgaggaaaatgagta	6	5	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214816822	T	T	214816822	1	4	103	0	1	0	0	0	0	0	0	0	3261	203	7	5		5	CENPF	1	214816822	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	6755254	214816822	34433799	105	101054											
USH2A	7399	broad.mit.edu	37	chr1	215953152	215953152	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaccacaatgacagactcctCcagtaggatttccttttttt	5	11	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215953152	G	G	215953152	1	3	103	0	1	0	0	0	0	0	0	0	17162	870	30	4		4	USH2A	1	215953152	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1136330	215953152	33297469	106	101055											
USH2A	7399	broad.mit.edu	37	chr1	216496780	216496780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttaagacagtaagtatgaCaaaaaccttgttgaaaacaa	7	5	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216496780	A	A	216496780	1	1	103	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	216496780	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	543628	216496780	32753841	107	101056											
TTC13	79573	broad.mit.edu	37	chr1	231114778	231114778	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaataagcccgcgcggcGcaagtcttccggtctggcgt	12	15	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231114778	T	T	231114778	1	4	103	0	1	0	0	0	0	0	0	0	16806	1102	38	3		3	TTC13	1	231114778	5'Flank	SNP	G	TCGA-38-4632-01A-01D-1753-08	14617998	231114778	18135843	108	101057											
GGPS1	9453	broad.mit.edu	37	chr1	235505515	235505515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacccttgatcacccagatGcagtgaagctttttacccgc	7	13	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235505515	T	T	235505515	3	4	103	1	0	0	0	0	1	0	0	0	6424	1319	46	3	341	3	GGPS1	1	235505515	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4390737	235505515	13745106	109	101058											
RYR2	6262	broad.mit.edu	37	chr1	237632499	237632499	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcaggtatgttttctAgttttttccttgttgtgata	7	6	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237632499	G	G	237632499	1	3	103	0	1	0	0	0	0	0	0	0	13880	435	15	5		5	RYR2	1	237632499	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2126984	237632499	11618122	110	101059											
RYR2	6262	broad.mit.edu	37	chr1	237711773	237711773	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcctgcccctatggacctGagctttatcaaactcacccc	6	16	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237711773	A	A	237711773	2	1	103	1	0	0	0	0	0	0	0	1	13880	1277	45	4		4	RYR2	1	237711773	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	79274	237711773	11538848	111	101060											
RYR2	6262	broad.mit.edu	37	chr1	237729815	237729815	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttatgatatctttccttCtctttcacctccccatccaa	1	14	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237729815	T	T	237729815	1	4	103	0	1	0	0	0	0	0	0	0	13880	928	32	4		4	RYR2	1	237729815	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	18042	237729815	11520806	112	101061											
RYR2	6262	broad.mit.edu	37	chr1	237875121	237875121	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccttattactgataccaAgtcaaagatgtcaaaggtat	6	7	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237875121	T	T	237875121	3	4	103	1	0	0	0	0	1	0	0	0	13880	72	3	5	10589	5	RYR2	1	237875121	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	145306	237875121	11375500	113	101062											
FMN2	56776	broad.mit.edu	37	chr1	240371074	240371074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccggagcgggcatacccCctcctcccccacttcccgga	8	21	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240371074	A	A	240371074	3	1	103	1	0	0	0	0	1	0	0	0	6008	623	22	2	2980	2	FMN2	1	240371074	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2495953	240371074	8879547	114	101063											
CEP170	9859	broad.mit.edu	37	chr1	243303204	243303204	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttacttatggaatatgctgCttctgccacatgttaaaatt	6	8	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243303204	T	T	243303204	1	4	103	0	1	0	0	0	0	0	0	0	3280	812	28	4		4	CEP170	1	243303204	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2932130	243303204	5947417	115	101064											
C1orf101	257044	broad.mit.edu	37	chr1	244715607	244715607	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagagatcattttattctctTttctttctcttcttaggacc	5	9	5	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	244715607	G	G	244715607	1	3	103	0	1	0	0	0	0	0	0	0	1996	1856	64	5		5	C1orf101	1	244715607	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1412403	244715607	4535014	116	101065											
KIF26B	55083	broad.mit.edu	37	chr1	245530707	245530707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggaagagcagggctggCtggagtcaaagcggagaagt	18	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245530707	A	A	245530707	1	1	103	0	1	0	0	0	0	0	0	0	8365	812	28	3		3	KIF26B	1	245530707	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	815100	245530707	3719914	117	101066											
NLRP3	114548	broad.mit.edu	37	chr1	247587738	247587738	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccgagcggggagacattctCctgagcagcctcatcagaaa	12	12	3	3	rs104895401		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247587738	T	T	247587738	2	4	103	1	0	0	0	0	0	0	0	1	10573	842	30	4		4	NLRP3	1	247587738	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2057031	247587738	1662883	118	101067											
OR2B11	127623	broad.mit.edu	37	chr1	247614592	247614592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtcccttggaggactggatCctgagcactgcccgggcaat	13	13	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614592	A	A	247614592	3	1	103	1	0	0	0	0	1	0	0	0	11082	854	30	3	263	3	OR2B11	1	247614592	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	26854	247614592	1636029	119	101068											
OR2B11	127623	broad.mit.edu	37	chr1	247614655	247614655	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagccaggggcaccaacacGaagaaggccaccagcacagc	12	14	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614655	A	A	247614655	2	1	103	1	0	0	0	0	0	0	0	1	11082	1049	37	4		4	OR2B11	1	247614655	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	63	247614655	1635966	120	101069											
OR6F1	343169	broad.mit.edu	37	chr1	247875162	247875162	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatttcttcagcagagtcTctcttacttccttattacga	4	12	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875162	A	A	247875162	3	1	103	1	0	0	0	0	1	0	0	0	11295	1551	54	5	34	5	OR6F1	1	247875162	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	260507	247875162	1375459	121	101070											
OR14A16	284532	broad.mit.edu	37	chr1	247978434	247978434	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatccaaaactacattaaTaaggatgagtgcaatttctc	6	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978434	A	A	247978434	3	1	103	1	0	0	0	0	1	0	0	0	11039	1406	49	5	335	5	OR14A16	1	247978434	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	103272	247978434	1272187	122	101071											
OR2W3	343171	broad.mit.edu	37	chr1	248058993	248058993	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcatcctgatcgcgtaCctcctgaccctcgtaggcaa	10	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248058993	A	A	248058993	4	1	103	1	0	0	0	0	0	1	0	0	11127	518	18	3	107	3	OR2W3	1	248058993	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	80559	248058993	1191628	123	101072											
OR14C36	127066	broad.mit.edu	37	chr1	248512748	248512748	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacatcttttcgaccgtgctCgggtttccaagaggagcaga	11	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248512748	A	A	248512748	2	1	103	1	0	0	0	0	0	0	0	1	11040	871	31	3		3	OR14C36	1	248512748	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	453755	248512748	737873	124	101073											
ALLC	55821	broad.mit.edu	37	chr2	3730547	3730547	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctagctaaaatccgacgacTggagttacttggttcccatg	10	10	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3730547	A	A	3730547	3	1	103	1	0	0	0	0	1	0	0	0	534	1580	55	5	416	5	ALLC	2	3730547	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08		3730547	239468826	125	101074											
RNF144A	9781	broad.mit.edu	37	chr2	7164598	7164598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcgcgcagatgatgtGcaagaactgcaagcacgcct	13	11	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7164598	T	T	7164598	3	4	103	1	0	0	0	0	1	0	0	0	13556	1319	46	3	626	3	RNF144A	2	7164598	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3434051	7164598	236034775	126	101075											
C2orf48	348738	broad.mit.edu	37	chr2	10282453	10282453	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccctgcttctgcgtgtcagGtgttactcggggtgcgccag	14	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10282453	C	C	10282453	3	2	103	1	0	0	0	0	1	0	0	0	2192	1252	44	4	150	4	C2orf48	2	10282453	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3117855	10282453	232916920	127	101076											
TRIB2	28951	broad.mit.edu	37	chr2	12858618	12858618	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattgcgtttcttgtatcgGgaaatacttattgttggaac	10	6	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12858618	A	A	12858618	3	1	103	1	0	0	0	0	1	0	0	0	16607	1232	43	4	187	4	TRIB2	2	12858618	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2576165	12858618	230340755	128	101077											
APOB	338	broad.mit.edu	37	chr2	21228933	21228933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaactgggctgacttgcatGgacctgaacaagagctgaca	13	9	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21228933	T	T	21228933	3	4	103	1	0	0	0	0	1	0	0	0	787	1348	47	2	2900	2	APOB	2	21228933	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	8370315	21228933	221970440	129	101078											
NCOA1	8648	broad.mit.edu	37	chr2	24929492	24929492	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctggaatgtcaattcccCgagtaaatccctcggtcaat	7	11	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24929492	A	A	24929492	2	1	103	1	0	0	0	0	0	0	0	1	10323	644	23	1		1	NCOA1	2	24929492	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	3700559	24929492	218269881	130	101079											
CENPA	1058	broad.mit.edu	37	chr2	27016122	27016122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactggcccggaggatccGgggccttgaggagggactcg	18	11	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016122	T	T	27016122	3	4	103	1	0	0	0	0	1	0	0	0	3256	1116	39	1	412	1	CENPA	2	27016122	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2086630	27016122	216183251	131	101080											
TCF23	150921	broad.mit.edu	37	chr2	27375715	27375715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccaccacaccactctcaCcagctcttggtgacaaataa	4	15	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27375715	A	A	27375715	3	1	103	1	0	0	0	0	1	0	0	0	15814	507	18	3	635	3	TCF23	2	27375715	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	359593	27375715	215823658	132	101081											
GCKR	2646	broad.mit.edu	37	chr2	27730148	27730148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtgatcacagtgacatGtttaaccagaaggctgagct	11	7	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27730148	T	T	27730148	3	4	103	1	0	0	0	0	1	0	0	0	6356	1377	48	3	1163	3	GCKR	2	27730148	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	354433	27730148	215469225	133	101082											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27905082	27905082	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaaaccttgggactccctgGaatagatgtgtataattatt	8	6	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27905082	T	T	27905082	1	4	103	0	1	0	0	0	0	0	0	0	14767	1189	41	3		3	SLC4A1AP	2	27905082	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	174934	27905082	215294291	134	101083											
XDH	7498	broad.mit.edu	37	chr2	31571266	31571266	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgccagacacaaaattcagTaaaatccaactcattaaggt	5	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31571266	A	A	31571266	1	1	103	0	1	0	0	0	0	0	0	0	17553	1653	57	5		5	XDH	2	31571266	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	3666184	31571266	211628107	135	101084											
BIRC6	57448	broad.mit.edu	37	chr2	32689617	32689617	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttacatcagacaacagctgCagcagctgcagcagcatcag	10	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32689617	T	T	32689617	3	4	103	1	0	0	0	0	1	0	0	0	1444	710	25	4	5080	4	BIRC6	2	32689617	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1118351	32689617	210509756	136	101085											
BIRC6	57448	broad.mit.edu	37	chr2	32726951	32726951	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcctgtggatatatgggcaGacaagtaagttcaagccaac	12	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32726951	T	T	32726951	3	4	103	1	0	0	0	0	1	0	0	0	1444	942	33	3	9389	3	BIRC6	2	32726951	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	37334	32726951	210472422	137	101086											
BIRC6	57448	broad.mit.edu	37	chr2	32768471	32768471	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagtacagaccatgtctcCcatacctgcccattctttgg	7	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32768471	G	G	32768471	3	3	103	1	0	0	0	0	1	0	0	0	1444	623	22	4	12701	4	BIRC6	2	32768471	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	41520	32768471	210430902	138	101087											
BIRC6	57448	broad.mit.edu	37	chr2	32768555	32768555	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctactgaaagagagaaaacAtgcccagtgccttcttcgat	9	10	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32768555	T	T	32768555	3	4	103	1	0	0	0	0	1	0	0	0	1444	217	8	5	12785	5	BIRC6	2	32768555	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	84	32768555	210430818	139	101088											
LTBP1	4052	broad.mit.edu	37	chr2	33505174	33505174	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaattctcctggatcttacCagtgcgttccctgcacagaa	8	12	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33505174	T	T	33505174	4	4	103	1	0	0	0	0	0	1	0	0	9160	595	21	4	3190	4	LTBP1	2	33505174	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	736619	33505174	209694199	140	101089											
RASGRP3	25780	broad.mit.edu	37	chr2	33774801	33774801	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctcaagccaaccttctgcGaacactgtgcgggatttgta	9	11	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33774801	T	T	33774801	4	4	103	1	0	0	0	0	0	1	0	0	13184	1059	37	3	1571	3	RASGRP3	2	33774801	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	269627	33774801	209424572	141	101090											
VIT	5212	broad.mit.edu	37	chr2	36982036	36982036	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaaaatatttctgttctttCctgaaaaattattttttctc	2	6	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36982036	A	A	36982036	1	1	103	0	1	0	0	0	0	0	0	0	17298	870	30	3		3	VIT	2	36982036	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3207235	36982036	206217337	142	101091											
HEATR5B	54497	broad.mit.edu	37	chr2	37289111	37289111	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagtgctccaagtaaaagcCagccagcttgggtgcgctgt	12	10	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37289111	T	T	37289111	4	4	103	1	0	0	0	0	0	1	0	0	7099	595	21	4	4652	4	HEATR5B	2	37289111	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	307075	37289111	205910262	143	101092											
THUMPD2	80745	broad.mit.edu	37	chr2	39982476	39982476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaattttatcctcaaggCctgcagctttcagattgtcc	6	11	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39982476	A	A	39982476	3	1	103	1	0	0	0	0	1	0	0	0	16006	739	26	3	486	3	THUMPD2	2	39982476	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2693365	39982476	203216897	144	101093											
SLC8A1	6546	broad.mit.edu	37	chr2	40342676	40342676	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaggccacaccgattcccAggaagacattcaccgcgttg	9	15	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40342676	T	T	40342676	3	4	103	1	0	0	0	0	1	0	0	0	14820	188	7	5	286	5	SLC8A1	2	40342676	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	360200	40342676	202856697	145	101094											
THADA	63892	broad.mit.edu	37	chr2	43735952	43735952	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataatcaaatattcggaatTaggtatcaaagttaaaagta	6	3	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43735952	C	C	43735952	1	2	103	0	1	0	0	0	0	0	0	0	15963	1769	61	5		5	THADA	2	43735952	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	3393276	43735952	199463421	146	101095											
ABCG5	64240	broad.mit.edu	37	chr2	44052004	44052004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaaaaaacattcatgatGgggaatgtgaaagaaaaact	9	3	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44052004	T	T	44052004	1	4	103	0	1	0	0	0	0	0	0	0	71	1363	47	2		2	ABCG5	2	44052004	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	316052	44052004	199147369	147	101096											
ABCG8	64241	broad.mit.edu	37	chr2	44100901	44100901	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtatgctgttgcctcaGcatctcttccttttggtttt	9	9	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44100901	A	A	44100901	1	1	103	0	1	0	0	0	0	0	0	0	72	986	34	4		4	ABCG8	2	44100901	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	48897	44100901	199098472	148	101097											
NRXN1	9378	broad.mit.edu	37	chr2	50280416	50280416	+	Missense_Mutation	SNP	A	T	T													tccacaggctcacctggctaAtgggttcttttgtcgggggc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50280416	T	T	50280416	3	4	103	1	0	0	0	0	1	0	0	0	10760	101	4	5	414	5	NRXN1	2	50280416	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	6179515	50280416	192918957	149	101098	437	2									
NRXN1	9378	broad.mit.edu	37	chr2	50280420	50280420	+	Missense_Mutation	SNP	G	T	T													caggctcacctggctaatggGttcttttgtcgggggctttc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50280420	T	T	50280420	3	4	103	1	0	0	0	0	1	0	0	0	10760	1261	44	3	418	3	NRXN1	2	50280420	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4	50280420	192918953	150	101099	437	2									
NRXN1	9378	broad.mit.edu	37	chr2	50850508	50850508	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcattatcattaaactttcCattcacaggctccactagtg	6	11	2	0	rs34326676		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50850508	A	A	50850508	4	1	103	1	0	0	0	0	0	1	0	0	10760	603	21	2	3801	2	NRXN1	2	50850508	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	570088	50850508	192348865	151	101100											
PSME4	23198	broad.mit.edu	37	chr2	54122188	54122188	+	Frame_Shift_Del	DEL	C	-	-													gccaagcttaggctgctcttCcacaccagcataaacaacca							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54122188	-	-	54122188	7	5	103	1	0	1	0	1	0	0	0	0	12815	864	30	0	1715	0	PSME4	2	54122188	Frame_Shift_Del	DEL	C	TCGA-38-4632-01A-01D-1753-08	3271680	54122188	189077185	152	101101											
PAPOLG	64895	broad.mit.edu	37	chr2	60995494	60995494	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgatccaccggccttggcctCctatagtgctgggattacaa	10	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60995494	G	G	60995494	1	3	103	0	1	0	0	0	0	0	0	0	11525	870	30	4		4	PAPOLG	2	60995494	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	6873306	60995494	182203879	153	101102											
ARHGAP25	9938	broad.mit.edu	37	chr2	69040394	69040394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctttcaaagagtttcaCagagcgttgcttattttctt	6	7	4	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69040394	A	A	69040394	1	1	103	0	1	0	0	0	0	0	0	0	876	493	17	3		3	ARHGAP25	2	69040394	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	8044900	69040394	174158979	154	101103											
ADD2	119	broad.mit.edu	37	chr2	70904853	70904853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgagaccccccagtgtGggagaagaaagagtgggata	15	8	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70904853	T	T	70904853	1	4	103	0	1	0	0	0	0	0	0	0	305	1363	47	2		2	ADD2	2	70904853	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1864459	70904853	172294520	155	101104											
CLEC4F	165530	broad.mit.edu	37	chr2	71038540	71038540	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggattcatcaggccaattatAgatatcctgtgccttggtgc	10	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71038540	G	G	71038540	1	3	103	0	1	0	0	0	0	0	0	0	3548	435	15	5		5	CLEC4F	2	71038540	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	133687	71038540	172160833	156	101105											
DYSF	8291	broad.mit.edu	37	chr2	71743361	71743361	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagctgtttgatgagcccAtctttatcacggtatgtctc	11	9	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71743361	G	G	71743361	3	3	103	1	0	0	0	0	1	0	0	0	4899	217	8	5	1066	5	DYSF	2	71743361	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	704821	71743361	171456012	157	101106											
CYP26B1	56603	broad.mit.edu	37	chr2	72359733	72359733	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacatgacactccagccttTggggatctggaaaccctgga	10	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72359733	C	C	72359733	3	2	103	1	0	0	0	0	1	0	0	0	4189	1821	63	5	380	5	CYP26B1	2	72359733	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	616372	72359733	170839640	158	101107											
NAT8	9027	broad.mit.edu	37	chr2	73868332	73868332	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgctcactgtccacaaagaGatgaaacagctgcaaccgct	9	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73868332	C	C	73868332	3	2	103	1	0	0	0	0	1	0	0	0	10273	942	33	4	263	4	NAT8	2	73868332	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1508599	73868332	169331041	159	101108											
REG3G	130120	broad.mit.edu	37	chr2	79255038	79255038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaaaccctggccactgtGggagcctgtcaagaagcaca	10	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79255038	T	T	79255038	3	4	103	1	0	0	0	0	1	0	0	0	13321	1348	47	2	453	2	REG3G	2	79255038	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5386706	79255038	163944335	160	101109											
REG1A	5967	broad.mit.edu	37	chr2	79348928	79348928	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctatactatcatcagccCcaaactttccaatctacttt	2	13	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79348928	T	T	79348928	1	4	103	0	1	0	0	0	0	0	0	0	13318	638	22	4		4	REG1A	2	79348928	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	93890	79348928	163850445	161	101110											
LRRTM1	347730	broad.mit.edu	37	chr2	80530357	80530357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgcgccagactcttgagCtgattgtatccgatgtcgag	12	10	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80530357	A	A	80530357	3	1	103	1	0	0	0	0	1	0	0	0	9126	796	28	3	984	3	LRRTM1	2	80530357	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1181429	80530357	162669016	162	101111											
RNF103	7844	broad.mit.edu	37	chr2	86832183	86832183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatggcatattatatatgcCaatatctgtcatataactct	5	7	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86832183	T	T	86832183	3	4	103	1	0	0	0	0	1	0	0	0	13534	594	21	4	1220	4	RNF103	2	86832183	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	6301826	86832183	156367190	163	101112											
ZNF514	84874	broad.mit.edu	37	chr2	95815661	95815661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgagagttgtttcccCctaaagtctgcctgaattct	7	11	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95815661	A	A	95815661	3	1	103	1	0	0	0	0	1	0	0	0	18086	623	22	2	637	2	ZNF514	2	95815661	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	8983478	95815661	147383712	164	101113											
ADRA2B	151	broad.mit.edu	37	chr2	96781457	96781457	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagatgaggggcggcagCgagatgacggcggcgatgag	20	6	0	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96781457	A	A	96781457	2	1	103	1	0	0	0	0	0	0	0	1	338	755	27	3		3	ADRA2B	2	96781457	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	965796	96781457	146417916	165	101114											
ASTL	431705	broad.mit.edu	37	chr2	96798292	96798292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcacctggcaggatctcGttccagttgacacggatata	11	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96798292	T	T	96798292	3	4	103	1	0	0	0	0	1	0	0	0	1067	1136	40	3	686	3	ASTL	2	96798292	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	16835	96798292	146401081	166	101115											
ZAP70	7535	broad.mit.edu	37	chr2	98354099	98354099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgactttggcctctccaaaGcactgggtgccgacgacagc	12	14	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98354099	T	T	98354099	3	4	103	1	0	0	0	0	1	0	0	0	17641	971	34	3	1487	3	ZAP70	2	98354099	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1555807	98354099	144845274	167	101116											
VWA3B	200403	broad.mit.edu	37	chr2	98844751	98844751	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacctttattctgagtccttGatcatggactggtggtacaa	10	8	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98844751	T	T	98844751	3	4	103	1	0	0	0	0	1	0	0	0	17368	1281	45	3	2160	3	VWA3B	2	98844751	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	490652	98844751	144354622	168	101117											
TSGA10	80705	broad.mit.edu	37	chr2	99718972	99718972	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcagaaatgtgacccggcTccattttacttgtttgatga	8	8	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99718972	A	A	99718972	1	1	103	0	1	0	0	0	0	0	0	0	16742	1566	54	5		5	TSGA10	2	99718972	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	874221	99718972	143480401	169	101118											
REV1	51455	broad.mit.edu	37	chr2	100038094	100038094	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgcttcatcacaactgacAgcttcaatgttatgagtgta	8	9	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100038094	G	G	100038094	2	3	103	1	0	0	0	0	0	0	0	1	13347	175	7	5		5	REV1	2	100038094	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	319122	100038094	143161279	170	101119											
NMS	129521	broad.mit.edu	37	chr2	101093780	101093780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcttccatgtttagagCaagtgacactcgatactaat	8	9	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101093780	A	A	101093780	1	1	103	0	1	0	0	0	0	0	0	0	10597	725	25	3		3	NMS	2	101093780	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1055686	101093780	142105593	171	101120											
IL18RAP	8807	broad.mit.edu	37	chr2	103068613	103068613	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtagaacagaaaccactgGgaggagctcccagcctaagg	12	11	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103068613	A	A	103068613	3	1	103	1	0	0	0	0	1	0	0	0	7718	1232	43	4	1810	4	IL18RAP	2	103068613	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1974833	103068613	140130760	172	101121											
SLC9A2	6549	broad.mit.edu	37	chr2	103300683	103300683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattgcctatggaggacttcGaggtgccatctgttttgcgt	12	9	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103300683	T	T	103300683	3	4	103	1	0	0	0	0	1	0	0	0	14826	1058	37	3	1331	3	SLC9A2	2	103300683	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	232070	103300683	139898690	173	101122											
SLC5A7	60482	broad.mit.edu	37	chr2	108626708	108626708	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttcggacaaagaaatcgtTtgggttatgcgaatcacagt	11	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108626708	A	A	108626708	2	1	103	1	0	0	0	0	0	0	0	1	14784	1828	64	5		5	SLC5A7	2	108626708	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	5326025	108626708	134572665	174	101123											
NPHP1	4867	broad.mit.edu	37	chr2	110901029	110901029	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatattataacaaaagatGactaaatatgaggaaaagcc	6	4	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110901029	A	A	110901029	1	1	103	0	1	0	0	0	0	0	0	0	10674	1305	45	4		4	NPHP1	2	110901029	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2274321	110901029	132298344	175	101124											
BUB1	699	broad.mit.edu	37	chr2	111426970	111426970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtggatgtagaaggcagCcaggctggccattcaatacc	12	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111426970	A	A	111426970	1	1	103	0	1	0	0	0	0	0	0	0	1580	754	26	3		3	BUB1	2	111426970	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	525941	111426970	131772403	176	101125											
IL1F9	56300	broad.mit.edu	37	chr2	113738708	113738708	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaactgtacagtcaccAgaagtacacagttatcaaaa	5	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113738708	G	G	113738708	1	3	103	0	1	0	0	0	0	0	0	0	7727	203	7	5		5	IL1F9	2	113738708	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2311738	113738708	129460665	177	101126											
MARCO	8685	broad.mit.edu	37	chr2	119750829	119750829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgccattgtcttctgccGcatgctgggttactccaaag	10	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119750829	T	T	119750829	3	4	103	1	0	0	0	0	1	0	0	0	9403	1087	38	3	1444	3	MARCO	2	119750829	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	6012121	119750829	123448544	178	101127											
MARCO	8685	broad.mit.edu	37	chr2	119752155	119752155	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgggctcatatgtgggaagGcagaggatctctgaggagtt	16	6	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119752155	A	A	119752155	1	1	103	0	1	0	0	0	0	0	0	0	9403	1218	42	4		4	MARCO	2	119752155	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	1326	119752155	123447218	179	101128											
TSN	7247	broad.mit.edu	37	chr2	122519158	122519158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggttgcttactttttggtGgaaagggtggttgtactttg	14	3	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122519158	T	T	122519158	1	4	103	0	1	0	0	0	0	0	0	0	16754	1363	47	2		2	TSN	2	122519158	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2767003	122519158	120680215	180	101129											
CNTNAP5	129684	broad.mit.edu	37	chr2	125367443	125367443	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagccggcttcttctacatcGactcagatggcagcggccca	10	15	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125367443	C	C	125367443	3	2	103	1	0	0	0	0	1	0	0	0	3682	1058	37	4	1865	4	CNTNAP5	2	125367443	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2848285	125367443	117831930	181	101130											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671823	125671823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaaatgaaattgacttGcaaaacacagtgagcgagtg	10	6	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125671823	T	T	125671823	3	4	103	1	0	0	0	0	1	0	0	0	3682	1310	46	3	3973	3	CNTNAP5	2	125671823	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	304380	125671823	117527550	182	101131											
MYO7B	4648	broad.mit.edu	37	chr2	128324254	128324254	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctggtggccgtcaacccgTtccaggtgctgccgctctac	11	16	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128324254	A	A	128324254	3	1	103	1	0	0	0	0	1	0	0	0	10177	1725	60	5	336	5	MYO7B	2	128324254	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2652431	128324254	114875119	183	101132											
ARHGEF4	50649	broad.mit.edu	37	chr2	131704278	131704278	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggacaagaagctagtgctGttggcagctgtatccacttg	12	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131704278	C	C	131704278	1	2	103	0	1	0	0	0	0	0	0	0	910	1392	48	4		4	ARHGEF4	2	131704278	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3380024	131704278	111495095	184	101133											
LYPD1	116372	broad.mit.edu	37	chr2	133425898	133425898	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagtcagtcctttttcctGctatttaatggccccctcac	5	14	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133425898	A	A	133425898	1	1	103	0	1	0	0	0	0	0	0	0	9197	1334	46	4		4	LYPD1	2	133425898	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1721620	133425898	109773475	185	101134											
LCT	3938	broad.mit.edu	37	chr2	136562311	136562311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcatgtggactttccCaaggccttgccaggacccac	9	15	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136562311	A	A	136562311	1	1	103	0	1	0	0	0	0	0	0	0	8765	609	21	2		2	LCT	2	136562311	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3136413	136562311	106637062	186	101135											
LCT	3938	broad.mit.edu	37	chr2	136570111	136570111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcacgtgttgggagaagCctccaatggtatcatagcta	12	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136570111	A	A	136570111	3	1	103	1	0	0	0	0	1	0	0	0	8765	739	26	3	3704	3	LCT	2	136570111	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	7800	136570111	106629262	187	101136											
THSD7B	80731	broad.mit.edu	37	chr2	137872775	137872775	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccccactggcatgtgacGggacccgtgtgtggcggtgg	17	11	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137872775	A	A	137872775	2	1	103	1	0	0	0	0	0	0	0	1	16003	1103	39	4		4	THSD7B	2	137872775	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	1302664	137872775	105326598	188	101137											
LRP1B	53353	broad.mit.edu	37	chr2	141607774	141607774	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttcctcagatgcatcgaaGtctatcacagtaacgtcatc	7	12	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141607774	A	A	141607774	2	1	103	1	0	0	0	0	0	0	0	1	9042	1020	36	4		4	LRP1B	2	141607774	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	3734999	141607774	101591599	189	101138											
LRP1B	53353	broad.mit.edu	37	chr2	141641558	141641558	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttctggagtagccaggcCatgctccacaaccacttcaa	8	15	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141641558	T	T	141641558	3	4	103	1	0	0	0	0	1	0	0	0	9042	594	21	4	10070	4	LRP1B	2	141641558	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	33784	141641558	101557815	190	101139											
KYNU	8942	broad.mit.edu	37	chr2	143799619	143799619	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattttttccccacagtgtGacaagcggaatccaaatggc	8	10	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143799619	T	T	143799619	3	4	103	1	0	0	0	0	1	0	0	0	8659	1290	45	3	1352	3	KYNU	2	143799619	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2158061	143799619	99399754	191	101140											
ACVR2A	92	broad.mit.edu	37	chr2	148602690	148602690	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaactggatatctagcgagaActtcctccggattccccggc	10	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148602690	T	T	148602690	1	4	103	0	1	0	0	0	0	0	0	0	223	58	2	5		5	ACVR2A	2	148602690	5'UTR	SNP	A	TCGA-38-4632-01A-01D-1753-08	4803071	148602690	94596683	192	101141											
ORC4L	5000	broad.mit.edu	37	chr2	148709899	148709899	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaattaagcttgaatttTaaaatattataatcaatttt	3	4	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148709899	C	C	148709899	1	2	103	0	1	0	0	0	0	0	0	0	11358	1769	61	5		5	ORC4L	2	148709899	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	107209	148709899	94489474	193	101142											
TNFAIP6	7130	broad.mit.edu	37	chr2	152226392	152226392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctttagctaaaagcataCataatataccatagatgctg	5	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152226392	A	A	152226392	1	1	103	0	1	0	0	0	0	0	0	0	16398	493	17	3		3	TNFAIP6	2	152226392	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3516493	152226392	90972981	194	101143											
NEB	4703	broad.mit.edu	37	chr2	152528873	152528873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctctgggtctgttgttacAcatacttacatcactctgaa	6	10	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152528873	G	G	152528873	1	3	103	0	1	0	0	0	0	0	0	0	10397	174	6	5		5	NEB	2	152528873	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	302481	152528873	90670500	195	101144											
FMNL2	114793	broad.mit.edu	37	chr2	153437457	153437457	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatttgtgtttttcttcttCttgttttggcagaacaaaag	8	5	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153437457	A	A	153437457	1	1	103	0	1	0	0	0	0	0	0	0	6010	928	32	3		3	FMNL2	2	153437457	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	908584	153437457	89761916	196	101145											
SCN2A	6326	broad.mit.edu	37	chr2	166170433	166170433	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactacgtgctgctgggaaaAcgtacatgatattttttgtg	10	7	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166170433	G	G	166170433	3	3	103	1	0	0	0	0	1	0	0	0	14029	43	2	5	1328	5	SCN2A	2	166170433	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	12732976	166170433	77028940	197	101146											
SCN1A	6323	broad.mit.edu	37	chr2	166847946	166847946	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagattagccccacctttgaTtttgtttttattgtacgtaa	6	7	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166847946	C	C	166847946	3	2	103	1	0	0	0	0	1	0	0	0	14027	1493	52	5	194	5	SCN1A	2	166847946	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	677513	166847946	76351427	198	101147											
SCN1A	6323	broad.mit.edu	37	chr2	166848161	166848161	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctccactctctcctagaAcccgctttgtaaaagcaaat	4	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166848161	G	G	166848161	3	3	103	1	0	0	0	0	1	0	0	0	14027	43	2	5	409	5	SCN1A	2	166848161	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	215	166848161	76351212	199	101148											
SCN1A	6323	broad.mit.edu	37	chr2	166894432	166894432	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagtggaagaagtcattcaTgtgccagcgtgggagttgac	16	6	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166894432	C	C	166894432	3	2	103	1	0	0	0	0	1	0	0	0	14027	1464	51	5	3277	5	SCN1A	2	166894432	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	46271	166894432	76304941	200	101149											
XIRP2	129446	broad.mit.edu	37	chr2	168104362	168104362	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaatattaaaatattaActgatacacaaagctccaag	3	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168104362	G	G	168104362	3	3	103	1	0	0	0	0	1	0	0	0	17557	43	2	5	6490	5	XIRP2	2	168104362	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	1209930	168104362	75095011	201	101150											
LRP2	4036	broad.mit.edu	37	chr2	169985301	169985301	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggagcgaaggtgatggagGtggtgtcgcagcaacacttt	17	6	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169985301	A	A	169985301	3	1	103	1	0	0	0	0	1	0	0	0	9043	1261	44	4	131	4	LRP2	2	169985301	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1880939	169985301	73214072	202	101151											
LRP2	4036	broad.mit.edu	37	chr2	170103295	170103295	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatagtaattgggcacacatCtgccatttttacaggggaag	11	7	1	0	rs147058423	byFrequency	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170103295	A	A	170103295	3	1	103	1	0	0	0	0	1	0	0	0	9043	913	32	3	11093	3	LRP2	2	170103295	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	117994	170103295	73096078	203	101152											
PDK1	5163	broad.mit.edu	37	chr2	173451116	173451116	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcccgcgcagtgcctctGgtatgttatcaagaaataat	8	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173451116	A	A	173451116	2	1	103	1	0	0	0	0	0	0	0	1	11769	1362	47	4		4	PDK1	2	173451116	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	3347821	173451116	69748257	204	101153											
HOXD3	3232	broad.mit.edu	37	chr2	177033942	177033942	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgtttggaggctatggcTacagcaaaactacggacact	11	9	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177033942	G	G	177033942	3	3	103	1	0	0	0	0	1	0	0	0	7390	1522	53	5	102	5	HOXD3	2	177033942	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	3582826	177033942	66165431	205	101154											
PDE11A	50940	broad.mit.edu	37	chr2	178528571	178528571	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgattcagtcagaacatgTaggccctcccaaatcaaagt	7	11	4	2	rs144532179	by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178528571	A	A	178528571	1	1	103	0	1	0	0	0	0	0	0	0	11725	1653	57	5		5	PDE11A	2	178528571	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1494629	178528571	64670802	206	101155											
PLEKHA3	65977	broad.mit.edu	37	chr2	179350531	179350531	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attggaggttagatagtcaaGggttcttcagcatactccag	11	7	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179350531	C	C	179350531	1	2	103	0	1	0	0	0	0	0	0	0	12152	1015	35	4		4	PLEKHA3	2	179350531	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	821960	179350531	63848842	207	101156											
TTN	7273	broad.mit.edu	37	chr2	179434299	179434300	+	Missense_Mutation	DNP	TA	AT	AT													gagccacctgcccttatattTatgattttccttagttctag							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	179434300	AT	AT	179434299	3	1	103	1	0	0	0	0	1	0	0	0	16861	1744	61	5	31567	5	TTN	2	179434299	Missense_Mutation	DNP	TA	TCGA-38-4632-01A-01D-1753-08	83768	179434299	63765074	208	101157											
TTN	7273	broad.mit.edu	37	chr2	179530103	179530103	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgttcagaggtaacgtaCttttcatacgtggagtttct	9	6	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179530103	A	A	179530103	5	1	103	1	0	0	0	0	0	0	1	0	16861	580	20	3		3	TTN	2	179530103	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	95804	179530103	63669270	209	101158											
TTN	7273	broad.mit.edu	37	chr2	179546340	179546341	+	Intron	DNP	GG	TT	TT													ttttatagtaggacagacatGgaggaaacaaagatctctta							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179546341	TT	TT	179546340	1	4	103	0	1	0	0	0	0	0	0	0	16861	1363	47	2		2	TTN	2	179546340	Intron	DNP	GG	TCGA-38-4632-01A-01D-1753-08	16237	179546340	63653033	210	101159											
TTN	7273	broad.mit.edu	37	chr2	179567367	179567367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccacgatgttctgtatgcGctttgtaaactgaattggtt	9	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179567367	T	T	179567367	3	4	103	1	0	0	0	0	1	0	0	0	16861	1087	38	3	74306	3	TTN	2	179567367	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	21027	179567367	63632006	211	101160											
TTN	7273	broad.mit.edu	37	chr2	179593801	179593801	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctttagccaggttatagAaataggaggagaacctgcca	10	8	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179593801	G	G	179593801	3	3	103	1	0	0	0	0	1	0	0	0	16861	246	9	5	85757	5	TTN	2	179593801	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	26434	179593801	63605572	212	101161											
TTN	7273	broad.mit.edu	37	chr2	179597015	179597015	+	Frame_Shift_Del	DEL	T	-	-													tactttgcaggctagctgggTggcatctcccttctttaaca							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179597015	-	-	179597015	7	5	103	1	0	1	0	1	0	0	0	0	16861	1696	59	0	88072	0	TTN	2	179597015	Frame_Shift_Del	DEL	T	TCGA-38-4632-01A-01D-1753-08	3214	179597015	63602358	213	101162											
TTN	7273	broad.mit.edu	37	chr2	179665049	179665049	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtgagaggtggcaagTggacgcttggccccatttag	17	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179665049	C	C	179665049	1	2	103	0	1	0	0	0	0	0	0	0	16861	1711	59	5		5	TTN	2	179665049	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	68034	179665049	63534324	214	101163											
DNAJC10	54431	broad.mit.edu	37	chr2	183605029	183605029	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgattttctttttctagtttCtcaactcattggatgctaaa	5	7	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183605029	G	G	183605029	3	3	103	1	0	0	0	0	1	0	0	0	4669	913	32	4	1029	4	DNAJC10	2	183605029	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3939980	183605029	59594344	215	101164											
FRZB	2487	broad.mit.edu	37	chr2	183699582	183699582	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatttcgggatttagttGcgtgcttgccgggggttcga	15	6	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183699582	T	T	183699582	2	4	103	1	0	0	0	0	0	0	0	1	6125	1306	46	3		3	FRZB	2	183699582	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	94553	183699582	59499791	216	101165											
COL3A1	1281	broad.mit.edu	37	chr2	189859624	189859624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaataaaactaccttcaGggtgagacagccaatttttc	6	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189859624	T	T	189859624	1	4	103	0	1	0	0	0	0	0	0	0	3720	1015	35	2		2	COL3A1	2	189859624	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	6160042	189859624	53339749	217	101166											
COL5A2	1290	broad.mit.edu	37	chr2	189933479	189933480	+	Intron	INS	-	T	T													acaagaaatgtccagctttcINStgggctggttcttaaatatg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189933480	T	T	189933479	6	5	103	0	1	1	1	0	0	0	0	0	3729	928	32	0		0	COL5A2	2	189933479	Intron	INS	-	TCGA-38-4632-01A-01D-1753-08	73855	189933479	53265894	218	101167											
DNAH7	56171	broad.mit.edu	37	chr2	196722014	196722014	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttccaaggagcctctcacTtacataacttttaaattgta	4	9	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196722014	C	C	196722014	1	2	103	0	1	0	0	0	0	0	0	0	4646	1624	56	5		5	DNAH7	2	196722014	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	6788535	196722014	46477359	219	101168											
ANKRD44	91526	broad.mit.edu	37	chr2	197873684	197873684	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttactgtcctttggcatcttTcacatcgaccgcctccgggt	8	14	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197873684	A	A	197873684	4	1	103	1	0	0	0	0	0	1	0	0	672	1792	62	5	870	5	ANKRD44	2	197873684	Nonsense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	1151670	197873684	45325689	220	101169											
AOX1	316	broad.mit.edu	37	chr2	201531518	201531518	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttctatttgtaaaagccAaaagtgcggtggggtctgca	11	7	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201531518	G	G	201531518	1	3	103	0	1	0	0	0	0	0	0	0	731	145	5	5		5	AOX1	2	201531518	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	3657834	201531518	41667855	221	101170											
CRYGA	1418	broad.mit.edu	37	chr2	209027790	209027790	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttactttttttttttatAtatgtttgagggtcaggcct	8	4	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209027790	G	G	209027790	1	3	103	0	1	0	0	0	0	0	0	0	3946	464	16	5		5	CRYGA	2	209027790	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	7496272	209027790	34171583	222	101171											
PTH2R	5746	broad.mit.edu	37	chr2	209302472	209302472	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagcgatctcagcatctttCatgtctttacaggagttgct	9	9	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209302472	A	A	209302472	1	1	103	0	1	0	0	0	0	0	0	0	12866	841	29	3		3	PTH2R	2	209302472	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	274682	209302472	33896901	223	101172											
ABCA12	26154	broad.mit.edu	37	chr2	215917192	215917192	+	Intron	SNP	C	A	A													ttgaatcactctacccattaCaaaattgaatcaagttacct							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215917192	A	A	215917192	1	1	103	0	1	0	0	0	0	0	0	0	30	493	17	3		3	ABCA12	2	215917192	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	6614720	215917192	27282181	224	101173	438	2									
ABCA12	26154	broad.mit.edu	37	chr2	215917194	215917194	+	Intron	SNP	A	T	T													gaatcactctacccattacaAaattgaatcaagttaccttt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215917194	T	T	215917194	1	4	103	0	1	0	0	0	0	0	0	0	30	29	1	5		5	ABCA12	2	215917194	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2	215917194	27282179	225	101174	438	2									
XRCC5	7520	broad.mit.edu	37	chr2	216995762	216995762	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctagctgttatttgaaatGgtatgcttttgattggtcat	9	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216995762	A	A	216995762	1	1	103	0	1	0	0	0	0	0	0	0	17583	1363	47	4		4	XRCC5	2	216995762	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1078568	216995762	26203611	226	101175											
SPEG	10290	broad.mit.edu	37	chr2	220331868	220331868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtctctgctctgtgcGtggcccccgtggctgctttc	13	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220331868	T	T	220331868	1	4	103	0	1	0	0	0	0	0	0	0	15154	1160	40	3		3	SPEG	2	220331868	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3336106	220331868	22867505	227	101176											
SGPP2	130367	broad.mit.edu	37	chr2	223386707	223386707	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctacccacctactgaggcAgcaaatagaggctgcacttc	8	14	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223386707	T	T	223386707	1	4	103	0	1	0	0	0	0	0	0	0	14333	203	7	5		5	SGPP2	2	223386707	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	3054839	223386707	19812666	228	101177											
COL4A4	1286	broad.mit.edu	37	chr2	227914766	227914766	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatttgacagatggcttcTgtatctccaaaccatacctt	6	11	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227914766	A	A	227914766	1	1	103	0	1	0	0	0	0	0	0	0	3725	1595	55	5		5	COL4A4	2	227914766	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	4528059	227914766	15284607	229	101178											
ECEL1	9427	broad.mit.edu	37	chr2	233345169	233345169	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtagatggactgcgaccgcCgcttgatgcaccagttctgg	14	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233345169	G	G	233345169	3	3	103	1	0	0	0	0	1	0	0	0	4931	652	23	4	167	4	ECEL1	2	233345169	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	5430403	233345169	9854204	230	101179											
CHRND	1144	broad.mit.edu	37	chr2	233396061	233396061	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctaagtctggcttccccaGgtggtgagaagacatcagtg	13	9	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233396061	A	A	233396061	5	1	103	1	0	0	0	0	0	0	1	0	3425	1014	35	4	850	4	CHRND	2	233396061	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	50892	233396061	9803312	231	101180											
CHRNG	1146	broad.mit.edu	37	chr2	233409472	233409472	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaaccttaccctttcTctttatcagagaaaggcccg	5	15	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233409472	A	A	233409472	1	1	103	0	1	0	0	0	0	0	0	0	3427	1566	54	5		5	CHRNG	2	233409472	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	13411	233409472	9789901	232	101181											
UGT1A5	54579	broad.mit.edu	37	chr2	234656719	234656719	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccaacaggaagccactAtctcaggtcggtgttcgtgc	12	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234656719	C	C	234656719	1	2	103	0	1	0	0	0	0	0	0	0	17074	464	16	5		5	UGT1A5	2	234656719	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1247247	234656719	8542654	233	101182											
COL6A3	1293	broad.mit.edu	37	chr2	238274647	238274647	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattctggtctctagaaccAtcaaaccccagaatcacatc	4	14	4	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238274647	G	G	238274647	2	3	103	1	0	0	0	0	0	0	0	1	3733	214	8	5		5	COL6A3	2	238274647	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	3617928	238274647	4924726	234	101183											
SCLY	51540	broad.mit.edu	37	chr2	238896697	238896697	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgaagaaaactttttatGttttaataaccttgtatagt	6	4	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238896697	A	A	238896697	1	1	103	0	1	0	0	0	0	0	0	0	14020	1392	48	4		4	SCLY	2	238896697	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	622050	238896697	4302676	235	101184											
AGXT	189	broad.mit.edu	37	chr2	241808615	241808615	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagatcaaggaaggcatccAgtacgtgttccagaccagga	12	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241808615	T	T	241808615	3	4	103	1	0	0	0	0	1	0	0	0	404	188	7	5	200	5	AGXT	2	241808615	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	2911918	241808615	1390758	236	101185											
FARP2	9855	broad.mit.edu	37	chr2	242429445	242429445	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacgcggctcagaaaacaatCgtggtggcagccaggtaagg	14	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242429445	G	G	242429445	3	3	103	1	0	0	0	0	1	0	0	0	5734	874	31	4	2572	4	FARP2	2	242429445	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	620830	242429445	769928	237	101186											
CHL1	10752	broad.mit.edu	37	chr3	432949	432949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctcatgcctgtaaatcccAgcactttgggaggccaaggc	12	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	432949	T	T	432949	1	4	103	0	1	0	0	0	0	0	0	0	3380	203	7	5		5	CHL1	3	432949	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08		432949	197589481	238	101187											
CNTN6	27255	broad.mit.edu	37	chr3	1320246	1320246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtcacttggagagtgatGtgagcacatcaggtcttagg	15	7	3	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1320246	T	T	1320246	1	4	103	0	1	0	0	0	0	0	0	0	3677	1392	48	3		3	CNTN6	3	1320246	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	887297	1320246	196702184	239	101188											
ITPR1	3708	broad.mit.edu	37	chr3	4715184	4715184	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgttggttttttcttcaaGcttaaaataaaattaagtgg	8	3	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4715184	A	A	4715184	1	1	103	0	1	0	0	0	0	0	0	0	7990	986	34	4		4	ITPR1	3	4715184	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3394938	4715184	193307246	240	101189											
NUP210	23225	broad.mit.edu	37	chr3	13361423	13361423	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtatgtgatgaagctgggCcacccaaaagacttctcctt	10	10	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13361423	A	A	13361423	3	1	103	1	0	0	0	0	1	0	0	0	10855	740	26	3	456	3	NUP210	3	13361423	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	8646239	13361423	184661007	241	101190											
FGD5	152273	broad.mit.edu	37	chr3	14862143	14862143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagaggaggtgggaaagaCgcttttgtcattggagggga	18	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14862143	A	A	14862143	3	1	103	1	0	0	0	0	1	0	0	0	5893	536	19	3	1567	3	FGD5	3	14862143	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1500720	14862143	183160287	242	101191											
GALNTL2	117248	broad.mit.edu	37	chr3	16261085	16261086	+	Intron	DNP	CC	AA	AA													ggggagggacagggaagcttCccaagacaagaactagatgt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	16261086	AA	AA	16261085	1	1	103	0	1	0	0	0	0	0	0	0	6284	870	30	3		3	GALNTL2	3	16261085	Intron	DNP	CC	TCGA-38-4632-01A-01D-1753-08	1398942	16261085	181761345	243	101192											
RFTN1	23180	broad.mit.edu	37	chr3	16475219	16475219	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctggttgtctaactgtttGcctcacctgtctgagggctg	11	11	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16475219	C	C	16475219	1	2	103	0	1	0	0	0	0	0	0	0	13366	1334	46	4		4	RFTN1	3	16475219	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	214134	16475219	181547211	244	101193											
ZNF385D	79750	broad.mit.edu	37	chr3	21706377	21706377	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaatttggcaggtacttaCcgcattgaaattggggaaga	11	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21706377	A	A	21706377	5	1	103	1	0	0	0	0	0	0	1	0	18004	521	18	3	1049	3	ZNF385D	3	21706377	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	5231158	21706377	176316053	245	101194											
RARB	5915	broad.mit.edu	37	chr3	25622075	25622075	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagtccgactggacctgggCctctgggacaaattcagtga	13	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25622075	G	G	25622075	2	3	103	1	0	0	0	0	0	0	0	1	13161	726	26	4		4	RARB	3	25622075	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	3915698	25622075	172400355	246	101195											
STT3B	201595	broad.mit.edu	37	chr3	31617899	31617899	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctctaggtttaactataGatcaacacatcatcttgcat	4	9	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31617899	C	C	31617899	3	2	103	1	0	0	0	0	1	0	0	0	15452	942	33	4	332	4	STT3B	3	31617899	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5995824	31617899	166404531	247	101196											
GPD1L	23171	broad.mit.edu	37	chr3	32207310	32207310	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttcctcccaactaggtttCcattgtttactgcagtgtat	6	10	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32207310	T	T	32207310	3	4	103	1	0	0	0	0	1	0	0	0	6670	855	30	4	994	4	GPD1L	3	32207310	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	589411	32207310	165815120	248	101197											
ARPP21	10777	broad.mit.edu	37	chr3	35778749	35778749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccctgcgaagcgccatGgtggggcagtcccaacagca	13	15	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35778749	T	T	35778749	3	4	103	1	0	0	0	0	1	0	0	0	982	1348	47	2	1606	2	ARPP21	3	35778749	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3571439	35778749	162243681	249	101198											
TRANK1	9881	broad.mit.edu	37	chr3	36871225	36871225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaccaattactagaccCagagtccccacatcccaaga	5	15	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36871225	A	A	36871225	1	1	103	0	1	0	0	0	0	0	0	0	16578	609	21	2		2	TRANK1	3	36871225	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1092476	36871225	161151205	250	101199											
MLH1	4292	broad.mit.edu	37	chr3	37057967	37057967	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagcccaggggcgggggtAgggggtcacaccagtccttc	18	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37057967	G	G	37057967	1	3	103	0	1	0	0	0	0	0	0	0	9710	435	15	5		5	MLH1	3	37057967	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	186742	37057967	160964463	251	101200											
SLC22A13	9390	broad.mit.edu	37	chr3	38317702	38317702	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttcccgggggtttgggtAcagaaggggtggggagttcc	20	7	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38317702	G	G	38317702	1	3	103	0	1	0	0	0	0	0	0	0	14557	406	14	5		5	SLC22A13	3	38317702	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1259735	38317702	159704728	252	101201											
KBTBD5	131377	broad.mit.edu	37	chr3	42730470	42730470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccactgtccatgatggcCgcattatcgtggcagctggg	15	11	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42730470	T	T	42730470	3	4	103	1	0	0	0	0	1	0	0	0	8066	652	23	4	1545	4	KBTBD5	3	42730470	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	4412768	42730470	155291960	253	101202											
CCBP2	1238	broad.mit.edu	37	chr3	42931753	42931753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaccaaggtggctatggCggttccagtagcagcagtag	13	9	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42931753	A	A	42931753	1	1	103	0	1	0	0	0	0	0	0	0	2760	783	27	3		3	CCBP2	3	42931753	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	201283	42931753	155090677	254	101203											
LAMB2	3913	broad.mit.edu	37	chr3	49168500	49168500	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcatagtagtacttctctcgGatctccctccgtgggtcgag	11	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49168500	C	C	49168500	3	2	103	1	0	0	0	0	1	0	0	0	8683	1164	41	4	4702	4	LAMB2	3	49168500	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	6236747	49168500	148853930	255	101204											
C3orf62	375341	broad.mit.edu	37	chr3	49308858	49308858	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttccagccaattcttcaaTagttcggatgcttgtatggt	8	8	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49308858	C	C	49308858	3	2	103	1	0	0	0	0	1	0	0	0	2260	1406	49	5	248	5	C3orf62	3	49308858	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	140358	49308858	148713572	256	101205											
DOCK3	1795	broad.mit.edu	37	chr3	50757269	50757269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcaggaacacttataaCcaaatgcattctttccagtg	7	9	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50757269	A	A	50757269	1	1	103	0	1	0	0	0	0	0	0	0	4728	522	18	3		3	DOCK3	3	50757269	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1448411	50757269	147265161	257	101206											
C3orf63	23272	broad.mit.edu	37	chr3	56675799	56675799	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagaaaaaggaagtcaTtggttgaagttaagtttaaa	10	3	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56675799	C	C	56675799	1	2	103	0	1	0	0	0	0	0	0	0	2261	1508	52	5		5	C3orf63	3	56675799	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	5918530	56675799	141346631	258	101207											
FAM3D	131177	broad.mit.edu	37	chr3	58621920	58621920	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctccccagacaatcctcCcaattttaaggcccctggga	6	17	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58621920	T	T	58621920	1	4	103	0	1	0	0	0	0	0	0	0	5610	638	22	4		4	FAM3D	3	58621920	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1946121	58621920	139400510	259	101208											
SYNPR	132204	broad.mit.edu	37	chr3	63601172	63601172	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttaacagagtagcatttgCattcttctgcagtcgcctca	7	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63601172	A	A	63601172	1	1	103	0	1	0	0	0	0	0	0	0	15578	725	25	3		3	SYNPR	3	63601172	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	4979252	63601172	134421258	260	101209											
FAM19A1	407738	broad.mit.edu	37	chr3	68055731	68055731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgagctgggggcttgaagCcggaggtaacctttcctgtc	14	10	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68055731	T	T	68055731	1	4	103	0	1	0	0	0	0	0	0	0	5578	754	26	4		4	FAM19A1	3	68055731	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4454559	68055731	129966699	261	101210											
SHQ1	55164	broad.mit.edu	37	chr3	72799747	72799747	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagttcatcttgttctgaAtctgagcctgagtcttcgtt	9	8	5	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72799747	T	T	72799747	3	4	103	1	0	0	0	0	1	0	0	0	14405	98	4	5	315	5	SHQ1	3	72799747	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	4744016	72799747	125222683	262	101211											
ROBO1	6091	broad.mit.edu	37	chr3	78656193	78656193	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggaggtggtggaagatcTaaaaagaaacattaaaaata	10	3	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78656193	A	A	78656193	5	1	103	1	0	0	0	0	0	0	1	0	13624	1536	53	5	533	5	ROBO1	3	78656193	Splice_Site	SNP	T	TCGA-38-4632-01A-01D-1753-08	5856446	78656193	119366237	263	101212											
CADM2	253559	broad.mit.edu	37	chr3	85932594	85932594	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatatctcaccgttctggGtaagtgcaagggactaacac	11	10	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85932594	T	T	85932594	5	4	103	1	0	0	0	0	0	0	1	0	2593	1275	44	3	446	3	CADM2	3	85932594	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	7276401	85932594	112089836	264	101213											
HTR1F	3355	broad.mit.edu	37	chr3	88040364	88040364	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attatatctgtttttatctcTatgcctcctctattctggag	5	9	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88040364	A	A	88040364	2	1	103	1	0	0	0	0	0	0	0	1	7510	1509	53	5		5	HTR1F	3	88040364	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	2107770	88040364	109982066	265	101214											
EPHA3	2042	broad.mit.edu	37	chr3	89259557	89259557	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggtcttgtgtcaacaattCtaaggaggaagatcctccaa	10	8	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89259557	A	A	89259557	3	1	103	1	0	0	0	0	1	0	0	0	5210	913	32	3	711	3	EPHA3	3	89259557	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1219193	89259557	108762873	266	101215											
EPHA3	2042	broad.mit.edu	37	chr3	89478163	89478163	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaagttcttacatctctAtaatcctcaggtaaatccaa	5	10	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89478163	G	G	89478163	1	3	103	0	1	0	0	0	0	0	0	0	5210	464	16	5		5	EPHA3	3	89478163	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	218606	89478163	108544267	267	101216											
PCNP	57092	broad.mit.edu	37	chr3	101304186	101304186	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaatttctgtggaaataTagttaaatcattcaagataa	5	4	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101304186	C	C	101304186	1	2	103	0	1	0	0	0	0	0	0	0	11683	1421	49	5		5	PCNP	3	101304186	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	11826023	101304186	96718244	268	101217											
ZBTB11	27107	broad.mit.edu	37	chr3	101390764	101390764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaataagtcaccaaggCtgcaaatactagtacactag	7	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101390764	A	A	101390764	1	1	103	0	1	0	0	0	0	0	0	0	17650	812	28	3		3	ZBTB11	3	101390764	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	86578	101390764	96631666	269	101218											
MORC1	27136	broad.mit.edu	37	chr3	108813939	108813939	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaaaaaacacatcaaTttactatgaaatacacaaaa	1	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108813939	A	A	108813939	1	1	103	0	1	0	0	0	0	0	0	0	9795	1508	52	5		5	MORC1	3	108813939	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	7423175	108813939	89208491	270	101219											
PLCXD2	257068	broad.mit.edu	37	chr3	111426936	111426936	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgagaacagctggaagctggGatccgctactttgacctgcg	13	11	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111426936	T	T	111426936	2	4	103	1	0	0	0	0	0	0	0	1	12137	1161	41	3		3	PLCXD2	3	111426936	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	2612997	111426936	86595494	271	101220											
WDR52	55779	broad.mit.edu	37	chr3	113092245	113092245	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttttttaaagctttttgAaatactgctcacttgaaagt	7	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113092245	C	C	113092245	1	2	103	0	1	0	0	0	0	0	0	0	17431	261	9	5		5	WDR52	3	113092245	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1665309	113092245	84930185	272	101221											
NR1I2	8856	broad.mit.edu	37	chr3	119501542	119501542	+	Intron	SNP	G	T	T													tgggaactgggatcaactcaGtcctgattccttttggcctg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119501542	T	T	119501542	1	4	103	0	1	0	0	0	0	0	0	0	10715	1044	36	3		3	NR1I2	3	119501542	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	6409297	119501542	78520888	273	101222	439	2									
NR1I2	8856	broad.mit.edu	37	chr3	119501544	119501544	+	Intron	SNP	C	T	T													ggaactgggatcaactcagtCctgattccttttggcctgct							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119501544	T	T	119501544	1	4	103	0	1	0	0	0	0	0	0	0	10715	870	30	4		4	NR1I2	3	119501544	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2	119501544	78520886	274	101223	439	2									
NR1I2	8856	broad.mit.edu	37	chr3	119501603	119501603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaggccaaggacagcaGcatgacagtcaccaggactc	11	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119501603	T	T	119501603	1	4	103	0	1	0	0	0	0	0	0	0	10715	986	34	3		3	NR1I2	3	119501603	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	59	119501603	78520827	275	101224											
NDUFB4	4710	broad.mit.edu	37	chr3	120320105	120320105	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattatcaaaactgagaggGtaagtattcagaccagatgt	9	5	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120320105	A	A	120320105	5	1	103	1	0	0	0	0	0	0	1	0	10378	1275	44	4	334	4	NDUFB4	3	120320105	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	818502	120320105	77702325	276	101225											
POLQ	10721	broad.mit.edu	37	chr3	121238684	121238684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtagacactgtccttcagCaatgctgctacaattaaatt	6	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121238684	A	A	121238684	1	1	103	0	1	0	0	0	0	0	0	0	12303	725	25	3		3	POLQ	3	121238684	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	918579	121238684	76783746	277	101226											
KALRN	8997	broad.mit.edu	37	chr3	124378374	124378374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagcaggttctgagctagGggtagagctagcggttctgt	16	7	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124378374	T	T	124378374	1	4	103	0	1	0	0	0	0	0	0	0	8045	1247	43	2		2	KALRN	3	124378374	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3139690	124378374	73644056	278	101227											
HEG1	57493	broad.mit.edu	37	chr3	124720857	124720857	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaccgcgttggactccCtataggcaaagtttgtgggt	11	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124720857	A	A	124720857	5	1	103	1	0	0	0	0	0	0	1	0	7111	695	24	2	817	2	HEG1	3	124720857	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	342483	124720857	73301573	279	101228											
ALDH1L1	10840	broad.mit.edu	37	chr3	125876315	125876315	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcatccgcccagaagatGgaaaacccccctttcttatc	5	16	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125876315	T	T	125876315	2	4	103	1	0	0	0	0	0	0	0	1	494	1335	47	2		2	ALDH1L1	3	125876315	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	1155458	125876315	72146115	280	101229											
PLXNA1	5361	broad.mit.edu	37	chr3	126749082	126749082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtccctgcctgccccccGcagggcacactgcagaagtt	11	16	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126749082	T	T	126749082	1	4	103	0	1	0	0	0	0	0	0	0	12214	1102	38	3		3	PLXNA1	3	126749082	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	872767	126749082	71273348	281	101230											
DNAJB8	165721	broad.mit.edu	37	chr3	128181837	128181837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccggtgtcgaaggggctGtggtagggcgtgctggcccc	19	10	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128181837	T	T	128181837	3	4	103	1	0	0	0	0	1	0	0	0	4666	1368	48	3	450	3	DNAJB8	3	128181837	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1432755	128181837	69840593	282	101231											
CCDC48	79825	broad.mit.edu	37	chr3	128758690	128758690	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccctcctcgtctcctgctGaggttactggcccaccctgt	8	19	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128758690	A	A	128758690	2	1	103	1	0	0	0	0	0	0	0	1	2847	1285	45	4		4	CCDC48	3	128758690	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	576853	128758690	69263740	283	101232											
COL6A6	131873	broad.mit.edu	37	chr3	130292971	130292971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttagcgatacctatcaccCggagtttccactgggaactt	9	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130292971	A	A	130292971	3	1	103	1	0	0	0	0	1	0	0	0	3735	652	23	1	3175	1	COL6A6	3	130292971	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1534281	130292971	67729459	284	101233											
BFSP2	8419	broad.mit.edu	37	chr3	133166285	133166285	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagtccctccacatccctAgactcctaggcaagtgtgga	9	14	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133166285	G	G	133166285	1	3	103	0	1	0	0	0	0	0	0	0	1422	435	15	5		5	BFSP2	3	133166285	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2873314	133166285	64856145	285	101234											
EPHB1	2047	broad.mit.edu	37	chr3	134968361	134968361	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagaatctctctgtccagAccacacctaggggtcagtgc	10	12	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134968361	G	G	134968361	1	3	103	0	1	0	0	0	0	0	0	0	5216	290	10	5		5	EPHB1	3	134968361	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1802076	134968361	63054069	286	101235											
CLSTN2	64084	broad.mit.edu	37	chr3	140281150	140281150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggctactccatctacGgtaaggccacactcagcccc	8	17	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140281150	T	T	140281150	3	4	103	1	0	0	0	0	1	0	0	0	3594	1130	39	1	2262	1	CLSTN2	3	140281150	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5312789	140281150	57741280	287	101236											
TRPC1	7220	broad.mit.edu	37	chr3	142510007	142510007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcacaacaaggtgactAtttactatgtcaattgaagg	8	7	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142510007	G	G	142510007	1	3	103	0	1	0	0	0	0	0	0	0	16703	464	16	5		5	TRPC1	3	142510007	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2228857	142510007	55512423	288	101237											
CHST2	9435	broad.mit.edu	37	chr3	142841065	142841065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctcctcctccaagcctttCgtggtatctgcacgcaatgc	9	15	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142841065	A	A	142841065	3	1	103	1	0	0	0	0	1	0	0	0	3435	883	31	3	1409	3	CHST2	3	142841065	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	331058	142841065	55181365	289	101238											
SLC9A9	285195	broad.mit.edu	37	chr3	142985603	142985603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttcatagcctcccaggcCgaggtctccctcataaatgt	9	13	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142985603	A	A	142985603	3	1	103	1	0	0	0	0	1	0	0	0	14835	652	23	1	62	1	SLC9A9	3	142985603	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	144538	142985603	55036827	290	101239											
ZIC4	84107	broad.mit.edu	37	chr3	147120537	147120537	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactctttaagagtgtttcgGtaaagccgtaatcgtttcct	9	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147120537	T	T	147120537	4	4	103	1	0	0	0	0	0	1	0	0	17807	1256	44	3	972	3	ZIC4	3	147120537	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4134934	147120537	50901893	291	101240											
OTOL1	131149	broad.mit.edu	37	chr3	161221370	161221371	+	Missense_Mutation	DNP	CC	TT	TT													ccatttcctcctcctaacatCcccatcaaatttgaaaagat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	161221371	TT	TT	161221370	3	4	103	1	0	0	0	0	1	0	0	0	11398	845	30	4	1088	4	OTOL1	3	161221370	Missense_Mutation	DNP	CC	TCGA-38-4632-01A-01D-1753-08	14100833	161221370	36801060	292	101241											
ZBBX	79740	broad.mit.edu	37	chr3	167045743	167045743	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccataccttttactgctgcAtgtaaattctgtttcttgtt	6	9	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167045743	T	T	167045743	3	4	103	1	0	0	0	0	1	0	0	0	17643	214	8	5	1597	5	ZBBX	3	167045743	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	5824373	167045743	30976687	293	101242											
NDUFB5	4711	broad.mit.edu	37	chr3	179334850	179334850	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtttgtataggacattgAcaattacatactgttacatg	8	5	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179334850	C	C	179334850	1	2	103	0	1	0	0	0	0	0	0	0	10379	290	10	5		5	NDUFB5	3	179334850	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	12289107	179334850	18687580	294	101243											
ABCC5	10057	broad.mit.edu	37	chr3	183645220	183645220	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagattcaagtttcagaggTagctgagcaatctagggaga	12	6	4	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183645220	A	A	183645220	2	1	103	1	0	0	0	0	0	0	0	1	56	1625	57	5		5	ABCC5	3	183645220	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	4310370	183645220	14377210	295	101244											
ALG3	10195	broad.mit.edu	37	chr3	183960561	183960561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacccccaacaggaactcCctatcccttcccactccccc	2	22	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183960561	A	A	183960561	1	1	103	0	1	0	0	0	0	0	0	0	520	638	22	2		2	ALG3	3	183960561	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	315341	183960561	14061869	296	101245											
EIF4G1	1981	broad.mit.edu	37	chr3	184039223	184039223	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctaatctcgcagtcctctCtattcctggggacactatga	8	13	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184039223	G	G	184039223	3	3	103	1	0	0	0	0	1	0	0	0	5078	913	32	4	881	4	EIF4G1	3	184039223	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	78662	184039223	13983207	297	101246											
EIF4G1	1981	broad.mit.edu	37	chr3	184039251	184039251	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggacactatgacaactatAcaaatgtctgtagaagaatc	9	7	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184039251	G	G	184039251	3	3	103	1	0	0	0	0	1	0	0	0	5078	381	14	5	909	5	EIF4G1	3	184039251	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	28	184039251	13983179	298	101247											
CCDC50	152137	broad.mit.edu	37	chr3	191107176	191107176	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgaattctgaagcatttTggcttttcatttcacaagaa	8	6	3	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191107176	G	G	191107176	1	3	103	0	1	0	0	0	0	0	0	0	2848	1827	63	5		5	CCDC50	3	191107176	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	7067925	191107176	6915254	299	101248											
ZDHHC19	131540	broad.mit.edu	37	chr3	195936393	195936393	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcagcggagcctggcgTgggaagaggattgggcacag	18	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195936393	A	A	195936393	1	1	103	0	1	0	0	0	0	0	0	0	17735	1711	59	5		5	ZDHHC19	3	195936393	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	4829217	195936393	2086037	300	101249											
ZDHHC19	131540	broad.mit.edu	37	chr3	195937443	195937443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccccctgcaggttcccaGcccttgagtgacacctcctt	7	18	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195937443	T	T	195937443	1	4	103	0	1	0	0	0	0	0	0	0	17735	986	34	3		3	ZDHHC19	3	195937443	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1050	195937443	2084987	301	101250											
LRCH3	84859	broad.mit.edu	37	chr3	197553671	197553671	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatctatgttaaaatcacAtttaactagaagctttgtaa	4	5	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197553671	G	G	197553671	1	3	103	0	1	0	0	0	0	0	0	0	9021	232	8	5		5	LRCH3	3	197553671	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1616228	197553671	468759	302	101251											
FGFBP2	83888	broad.mit.edu	37	chr4	15964478	15964478	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgcagggcttgattcCagtaaggtttggggtcagca	14	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15964478	T	T	15964478	4	4	103	1	0	0	0	0	0	1	0	0	5918	595	21	4	400	4	FGFBP2	4	15964478	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08		15964478	175189798	303	101252											
ANAPC4	29945	broad.mit.edu	37	chr4	25382048	25382048	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttggagttttccaccaaAtgaaaatacaggaaaggagg	11	5	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25382048	G	G	25382048	3	3	103	1	0	0	0	0	1	0	0	0	604	101	4	5	188	5	ANAPC4	4	25382048	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	9417570	25382048	165772228	304	101253											
TMEM156	80008	broad.mit.edu	37	chr4	38995327	38995327	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catatctatatcggataactCcttttccctttagtttcctt	3	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38995327	A	A	38995327	1	1	103	0	1	0	0	0	0	0	0	0	16196	870	30	3		3	TMEM156	4	38995327	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	13613279	38995327	152158949	305	101254											
UGDH	7358	broad.mit.edu	37	chr4	39512309	39512309	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagttgggttttgtgtttGcatcaaatatgcgacggata	11	5	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39512309	A	A	39512309	3	1	103	1	0	0	0	0	1	0	0	0	17066	1319	46	4	1083	4	UGDH	4	39512309	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	516982	39512309	151641967	306	101255											
PDS5A	23244	broad.mit.edu	37	chr4	39929778	39929778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatccataaaggttttcaCtaccatctgtaaaaatgtac	4	9	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39929778	A	A	39929778	3	1	103	1	0	0	0	0	1	0	0	0	11785	565	20	3	4025	3	PDS5A	4	39929778	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	417469	39929778	151224498	307	101256											
YIPF7	285525	broad.mit.edu	37	chr4	44638050	44638050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtaacccgatgacatgaGcatctctgatggaacaaagg	11	9	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44638050	T	T	44638050	3	4	103	1	0	0	0	0	1	0	0	0	17610	971	34	3	617	3	YIPF7	4	44638050	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4708272	44638050	146516226	308	101257											
COX7B2	170712	broad.mit.edu	37	chr4	46737285	46737285	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagagaaaagatatgcattGatgtccaatctttattcaat	7	5	2	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46737285	T	T	46737285	1	4	103	0	1	0	0	0	0	0	0	0	3815	1305	45	3		3	COX7B2	4	46737285	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2099235	46737285	144416991	309	101258											
GABRB1	2560	broad.mit.edu	37	chr4	47034433	47034433	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcccacctccccggcaGggccccccgtcgacgttggg	14	18	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47034433	T	T	47034433	5	4	103	1	0	0	0	0	0	0	1	0	6226	1014	35	2	182	2	GABRB1	4	47034433	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	297148	47034433	144119843	310	101259											
GABRB1	2560	broad.mit.edu	37	chr4	47408916	47408916	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaccagagtgccaatgagaaGaataaactggagatgaataa	11	5	0	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47408916	T	T	47408916	3	4	103	1	0	0	0	0	1	0	0	0	6226	933	33	3	1083	3	GABRB1	4	47408916	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	374483	47408916	143745360	311	101260											
CWH43	80157	broad.mit.edu	37	chr4	49032993	49032993	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggggtgagtataccttggGagttaatcccgaagatagtc	14	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49032993	T	T	49032993	1	4	103	0	1	0	0	0	0	0	0	0	4106	1189	41	3		3	CWH43	4	49032993	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1624077	49032993	142121283	312	101261											
PDGFRA	5156	broad.mit.edu	37	chr4	55127576	55127576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacatttacatctatgtgCcaggtgagttggctgggtct	13	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55127576	A	A	55127576	3	1	103	1	0	0	0	0	1	0	0	0	11755	739	26	3	370	3	PDGFRA	4	55127576	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	6094583	55127576	136026700	313	101262											
LPHN3	23284	broad.mit.edu	37	chr4	62897253	62897253	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaagcacagtcatcatGgcctatctcttcaccatttt	5	11	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62897253	A	A	62897253	3	1	103	1	0	0	0	0	1	0	0	0	9004	1348	47	4	3390	4	LPHN3	4	62897253	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	7769677	62897253	128257023	314	101263											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69097124	69097124	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaggatttatttacacgaGagcaggtatctttgattacg	10	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69097124	T	T	69097124	1	4	103	0	1	0	0	0	0	0	0	0	16363	957	33	3		3	TMPRSS11B	4	69097124	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	6199871	69097124	122057152	315	101264											
UGT2B4	7363	broad.mit.edu	37	chr4	70361447	70361447	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgacctctctggacaagttCatccaggattgtctttatat	7	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70361447	T	T	70361447	3	4	103	1	0	0	0	0	1	0	0	0	17087	835	29	4	1477	4	UGT2B4	4	70361447	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1264323	70361447	120792829	316	101265											
UGT2B4	7363	broad.mit.edu	37	chr4	70361573	70361573	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagctgaagtccatttcaTagacatcctgatgcaatgca	8	9	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70361573	A	A	70361573	3	1	103	1	0	0	0	0	1	0	0	0	17087	1406	49	5	1603	5	UGT2B4	4	70361573	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	126	70361573	120792703	317	101266											
C4orf40	401137	broad.mit.edu	37	chr4	71020081	71020081	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatagtgttaatattcataGggtcaatcaaaatgaagctt	7	4	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71020081	T	T	71020081	5	4	103	1	0	0	0	0	0	0	1	0	2292	1015	35	2		2	C4orf40	4	71020081	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	658508	71020081	120134195	318	101267											
SLC4A4	8671	broad.mit.edu	37	chr4	72332163	72332163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattttctttattttagggCgtgttggagagtttcctggg	12	4	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72332163	A	A	72332163	2	1	103	1	0	0	0	0	0	0	0	1	14770	755	27	3		3	SLC4A4	4	72332163	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	1312082	72332163	118822113	319	101268											
AFP	174	broad.mit.edu	37	chr4	74307937	74307937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaatctttaaataaatcCcagtgtccagttccaagcag	6	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74307937	A	A	74307937	1	1	103	0	1	0	0	0	0	0	0	0	363	638	22	2		2	AFP	4	74307937	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1975774	74307937	116846339	320	101269											
NAAA	27163	broad.mit.edu	37	chr4	76841001	76841001	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatttcacggagtttttcaTattcactattaacaaaacac	4	8	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76841001	A	A	76841001	1	1	103	0	1	0	0	0	0	0	0	0	10221	1421	49	5		5	NAAA	4	76841001	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2533064	76841001	114313275	321	101270											
CDS1	1040	broad.mit.edu	37	chr4	85560132	85560132	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtttcttttccacagttgTgtttggattcattgtgagta	10	5	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85560132	A	A	85560132	3	1	103	1	0	0	0	0	1	0	0	0	3207	1696	59	5	900	5	CDS1	4	85560132	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	8719131	85560132	105594144	322	101271											
WDFY3	23001	broad.mit.edu	37	chr4	85701173	85701173	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggacaatataattcttcCagagtttcaaacaacatgaa	5	8	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85701173	G	G	85701173	1	3	103	0	1	0	0	0	0	0	0	0	17397	609	21	4		4	WDFY3	4	85701173	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	141041	85701173	105453103	323	101272											
PKD2	5311	broad.mit.edu	37	chr4	88996906	88996906	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggctgtcctgaattgctGtaacaagcacactatttata	8	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88996906	T	T	88996906	1	4	103	0	1	0	0	0	0	0	0	0	12061	1392	48	3		3	PKD2	4	88996906	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	3295733	88996906	102157370	324	101273											
PDHA2	5161	broad.mit.edu	37	chr4	96762200	96762200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcctggagtcagttatcGtacacgagaagaaattcagg	11	7	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96762200	T	T	96762200	3	4	103	1	0	0	0	0	1	0	0	0	11759	1145	40	3	901	3	PDHA2	4	96762200	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	7765294	96762200	94392076	325	101274											
ADH4	127	broad.mit.edu	37	chr4	100052734	100052734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgataacttcctggatcGgtttatgtaagtctctagga	9	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100052734	T	T	100052734	3	4	103	1	0	0	0	0	1	0	0	0	310	1116	39	1	394	1	ADH4	4	100052734	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3290534	100052734	91101542	326	101275											
NHEDC1	150159	broad.mit.edu	37	chr4	103822347	103822347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgtaagcattttaggcCccagaatgcccataagtaga	11	9	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103822347	A	A	103822347	3	1	103	1	0	0	0	0	1	0	0	0	10495	623	22	2	176	2	NHEDC1	4	103822347	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3769613	103822347	87331929	327	101276											
BDH2	56898	broad.mit.edu	37	chr4	104004086	104004086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagatggcgtatcaactgttCctaaatcaaagggggatatt	11	6	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104004086	A	A	104004086	3	1	103	1	0	0	0	0	1	0	0	0	1396	869	30	3	216	3	BDH2	4	104004086	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	181739	104004086	87150190	328	101277											
LEF1	51176	broad.mit.edu	37	chr4	109086205	109086205	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacctatttatacaaatTgcaccccttatctgctaaag	3	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109086205	A	A	109086205	1	1	103	0	1	0	0	0	0	0	0	0	8786	1827	63	5		5	LEF1	4	109086205	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	5082119	109086205	82068071	329	101278											
ANK2	287	broad.mit.edu	37	chr4	114208779	114208779	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtggactcacatccttaCaccttgcagcccaggaagat	9	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114208779	T	T	114208779	3	4	103	1	0	0	0	0	1	0	0	0	621	478	17	4	2197	4	ANK2	4	114208779	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	5122574	114208779	76945497	330	101279											
CAMK2D	817	broad.mit.edu	37	chr4	114434364	114434364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctgtgccacacatttgCcacccctgaacaatgaagtt	7	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114434364	A	A	114434364	1	1	103	0	1	0	0	0	0	0	0	0	2627	754	26	3		3	CAMK2D	4	114434364	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	225585	114434364	76719912	331	101280											
UGT8	7368	broad.mit.edu	37	chr4	115544547	115544547	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcctgctgaagtgggtgctCctgctccattagcatacgtc	10	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115544547	T	T	115544547	3	4	103	1	0	0	0	0	1	0	0	0	17091	855	30	4	513	4	UGT8	4	115544547	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1110183	115544547	75609729	332	101281											
NDST4	64579	broad.mit.edu	37	chr4	115749058	115749058	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttggatagttccacattatGatctcggtagtaattagaga	9	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115749058	T	T	115749058	3	4	103	1	0	0	0	0	1	0	0	0	10353	1290	45	3	89	3	NDST4	4	115749058	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	204511	115749058	75405218	333	101282											
PDE5A	8654	broad.mit.edu	37	chr4	120548231	120548231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgccaccggggcgccaCcacccagcacccgagacccg	12	20	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120548231	A	A	120548231	1	1	103	0	1	0	0	0	0	0	0	0	11738	522	18	3		3	PDE5A	4	120548231	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4799173	120548231	70606045	334	101283											
ADAD1	132612	broad.mit.edu	37	chr4	123301509	123301509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttgtatagacatttaccCgtggccgtgtacctggagct	12	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123301509	A	A	123301509	1	1	103	0	1	0	0	0	0	0	0	0	231	667	23	1		1	ADAD1	4	123301509	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2753278	123301509	67852767	335	101284											
SPATA5	166378	broad.mit.edu	37	chr4	123977508	123977508	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatacatgattgcatttatAaagacactgaacagttgttt	6	5	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123977508	G	G	123977508	1	3	103	0	1	0	0	0	0	0	0	0	15127	377	13	5		5	SPATA5	4	123977508	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	675999	123977508	67176768	336	101285											
FAT4	79633	broad.mit.edu	37	chr4	126240578	126240578	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactctcttatgaagtcacCctttctgagtcagaacctgt	6	12	4	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126240578	T	T	126240578	2	4	103	1	0	0	0	0	0	0	0	1	5749	610	22	4		4	FAT4	4	126240578	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2263070	126240578	64913698	337	101286											
PCDH10	57575	broad.mit.edu	37	chr4	134071449	134071449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaaaactttcggctcgcGggtttcagacggtgcccaac	10	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134071449	T	T	134071449	3	4	103	1	0	0	0	0	1	0	0	0	11601	1116	39	1	156	1	PCDH10	4	134071449	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	7830871	134071449	57082827	338	101287											
CLGN	1047	broad.mit.edu	37	chr4	141316926	141316926	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatatttaaatagaaaagatCacaacatttttaacttcact	3	6	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141316926	G	G	141316926	1	3	103	0	1	0	0	0	0	0	0	0	3556	841	29	4		4	CLGN	4	141316926	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	7245477	141316926	49837350	339	101288											
DCHS2	54798	broad.mit.edu	37	chr4	155295093	155295093	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcaccagggctaaatgtgtCattctctgctcatcctgaaa	7	11	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155295093	A	A	155295093	3	1	103	1	0	0	0	0	1	0	0	0	4321	826	29	3	8493	3	DCHS2	4	155295093	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	13978167	155295093	35859183	340	101289											
FSTL5	56884	broad.mit.edu	37	chr4	162307217	162307217	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaggatggttgaaatgcCagatcagatatgtgcagatt	12	4	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162307217	A	A	162307217	2	1	103	1	0	0	0	0	0	0	0	1	6140	581	21	2		2	FSTL5	4	162307217	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	7012124	162307217	28847059	341	101290											
CPE	1363	broad.mit.edu	37	chr4	166408578	166408578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattttgactttccatttgGtgttttggcagggatgcaag	11	5	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166408578	T	T	166408578	1	4	103	0	1	0	0	0	0	0	0	0	3831	1276	44	3		3	CPE	4	166408578	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	4101361	166408578	24745698	342	101291											
PALLD	23022	broad.mit.edu	37	chr4	169612313	169612313	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgactgtaacatttcttcagAcatgtcctagacaaggtaat	7	8	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169612313	T	T	169612313	1	4	103	0	1	0	0	0	0	0	0	0	11501	290	10	5		5	PALLD	4	169612313	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	3203735	169612313	21541963	343	101292											
GALNTL6	442117	broad.mit.edu	37	chr4	173804035	173804035	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttagaaatctggggaggaGaacagtatgaaatctctttt	11	4	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173804035	T	T	173804035	4	4	103	1	0	0	0	0	0	1	0	0	6287	943	33	3	1044	3	GALNTL6	4	173804035	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4191722	173804035	17350241	344	101293											
GPM6A	2823	broad.mit.edu	37	chr4	176622815	176622815	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttccagaaagcgcttcatgAccgcagccacagaacagggc	11	13	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176622815	C	C	176622815	2	2	103	1	0	0	0	0	0	0	0	1	6680	262	10	5		5	GPM6A	4	176622815	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	2818780	176622815	14531461	345	101294											
ASB5	140458	broad.mit.edu	37	chr4	177136756	177136756	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattactttactgttttatcGatactgtaagaaattcttca	4	6	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177136756	A	A	177136756	4	1	103	1	0	0	0	0	0	1	0	0	1030	1066	37	4	8	4	ASB5	4	177136756	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	513941	177136756	14017520	346	101295											
CYP4V2	285440	broad.mit.edu	37	chr4	187115681	187115681	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagatcattgagtacaCagaggaataccgccacatgc	9	11	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187115681	G	G	187115681	3	3	103	1	0	0	0	0	1	0	0	0	4225	478	17	4	248	4	CYP4V2	4	187115681	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	9978925	187115681	4038595	347	101296											
FAT1	2195	broad.mit.edu	37	chr4	187557842	187557842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcattcccgtcttcgatgCtgtaggagatttctgcattg	10	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187557842	A	A	187557842	3	1	103	1	0	0	0	0	1	0	0	0	5746	797	28	3	9989	3	FAT1	4	187557842	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	442161	187557842	3596434	348	101297											
PLEKHG4B	153478	broad.mit.edu	37	chr5	163534	163534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctggaggtaaccagcaCtgtagccacagagaagaagc	14	10	0	2	rs144505991	byFrequency	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163534	A	A	163534	3	1	103	1	0	0	0	0	1	0	0	0	12167	565	20	3	2321	3	PLEKHG4B	5	163534	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08		163534	180751726	349	101298											
NKD2	85409	broad.mit.edu	37	chr5	1037837	1037837	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacccctggcgcagctcttCcagtgggccctgggccgttt	14	15	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1037837	A	A	1037837	1	1	103	0	1	0	0	0	0	0	0	0	10537	870	30	3		3	NKD2	5	1037837	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	874303	1037837	179877423	350	101299											
SLC6A18	348932	broad.mit.edu	37	chr5	1244963	1244963	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacggtgccatccggtgcccGacgacccatgcggtgcacat	12	15	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1244963	T	T	1244963	1	4	103	0	1	0	0	0	0	0	0	0	14795	1073	37	3		3	SLC6A18	5	1244963	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	207126	1244963	179670297	351	101300											
LPCAT1	79888	broad.mit.edu	37	chr5	1474683	1474683	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtactcacccgaggccCcgcacgagcctggcaaattc	10	17	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1474683	A	A	1474683	2	1	103	1	0	0	0	0	0	0	0	1	8997	610	22	2		2	LPCAT1	5	1474683	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	229720	1474683	179440577	352	101301											
ADAMTS16	170690	broad.mit.edu	37	chr5	5232586	5232586	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccatgctccaggacctgcGgagggggagtatctcatagg	14	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5232586	A	A	5232586	3	1	103	1	0	0	0	0	1	0	0	0	261	1117	39	4	1853	4	ADAMTS16	5	5232586	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3757903	5232586	175682674	353	101302											
KIAA0947	23379	broad.mit.edu	37	chr5	5454709	5454709	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactctggctctgtgtaaacAcaacacacagactacctggt	7	12	2	1	rs34789072		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5454709	T	T	5454709	3	4	103	1	0	0	0	0	1	0	0	0	8272	159	6	5	691	5	KIAA0947	5	5454709	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	222123	5454709	175460551	354	101303											
NSUN2	54888	broad.mit.edu	37	chr5	6632141	6632141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaaaaactaagttaataCattgtatcttcttaaattta	2	5	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6632141	A	A	6632141	1	1	103	0	1	0	0	0	0	0	0	0	10773	493	17	3		3	NSUN2	5	6632141	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1177432	6632141	174283119	355	101304											
ADCY2	108	broad.mit.edu	37	chr5	7820628	7820628	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaataaaaaaaataaaaaGacaatggttataagatgaat	5	1	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7820628	T	T	7820628	1	4	103	0	1	0	0	0	0	0	0	0	294	957	33	3		3	ADCY2	5	7820628	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1188487	7820628	173094632	356	101305											
CTNND2	1501	broad.mit.edu	37	chr5	11110885	11110885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcctgatgaaaatgcagGgctcattctctatatattga	7	9	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11110885	T	T	11110885	1	4	103	0	1	0	0	0	0	0	0	0	4054	1247	43	2		2	CTNND2	5	11110885	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3290257	11110885	169804375	357	101306											
TRIO	7204	broad.mit.edu	37	chr5	14462918	14462918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccaaatcctcctcctcgGggatgcagagctgtggagaa	11	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14462918	T	T	14462918	3	4	103	1	0	0	0	0	1	0	0	0	16677	1232	43	2	5693	2	TRIO	5	14462918	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3352033	14462918	166452342	358	101307											
MARCH11	441061	broad.mit.edu	37	chr5	16177732	16177732	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagtgtaattttcacaaaaTgtttttaagtagcataagta	6	3	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16177732	C	C	16177732	1	2	103	0	1	0	0	0	0	0	0	0	9392	1479	51	5		5	MARCH11	5	16177732	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1714814	16177732	164737528	359	101308											
ZNF622	90441	broad.mit.edu	37	chr5	16465129	16465129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagttcctctttaccctccCcgcccagacagggccatcac	6	19	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16465129	A	A	16465129	1	1	103	0	1	0	0	0	0	0	0	0	18173	638	22	2		2	ZNF622	5	16465129	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	287397	16465129	164450131	360	101309											
CDH18	1016	broad.mit.edu	37	chr5	19520713	19520713	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaagaataataaaaataaAggcgcttgcatttattccat	5	7	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19520713	T	T	19520713	1	4	103	0	1	0	0	0	0	0	0	0	3133	87	3	5		5	CDH18	5	19520713	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	3055584	19520713	161394547	361	101310											
PDZD2	23037	broad.mit.edu	37	chr5	32037441	32037441	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcaagctcaagagtcgCctttcaggtaggtgggggct	13	8	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32037441	G	G	32037441	2	3	103	1	0	0	0	0	0	0	0	1	11795	726	26	4		4	PDZD2	5	32037441	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	12516728	32037441	148877819	362	101311											
NPR3	4883	broad.mit.edu	37	chr5	32774653	32774653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcccctctgagccatgcCaggaaagtcatggcgtgatt	10	11	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32774653	A	A	32774653	1	1	103	0	1	0	0	0	0	0	0	0	10691	609	21	2		2	NPR3	5	32774653	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	737212	32774653	148140607	363	101312											
NPR3	4883	broad.mit.edu	37	chr5	32786323	32786323	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagttttattaccacattcActttccctttacccaggaag	4	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32786323	T	T	32786323	1	4	103	0	1	0	0	0	0	0	0	0	10691	174	6	5		5	NPR3	5	32786323	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	11670	32786323	148128937	364	101313											
C5orf23	79614	broad.mit.edu	37	chr5	32789921	32789921	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagtaggttccagtggcgtCactaccttcttgtaagccag	10	10	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32789921	G	G	32789921	1	3	103	0	1	0	0	0	0	0	0	0	2309	841	29	4		4	C5orf23	5	32789921	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	3598	32789921	148125339	365	101314											
ADAMTS12	81792	broad.mit.edu	37	chr5	33616189	33616189	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacataacctaaagagagaAgacacaatcatgaaagaggc	8	8	1	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33616189	G	G	33616189	1	3	103	0	1	0	0	0	0	0	0	0	257	87	3	5		5	ADAMTS12	5	33616189	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	826268	33616189	147299071	366	101315											
UGT3A1	133688	broad.mit.edu	37	chr5	35965971	35965971	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttagcaaataactacaTtgagtcccaaatatttccat	4	10	0	1	rs144943338		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35965971	A	A	35965971	3	1	103	1	0	0	0	0	1	0	0	0	17089	1490	52	5	1309	5	UGT3A1	5	35965971	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2349782	35965971	144949289	367	101316											
UGT3A2	167127	broad.mit.edu	37	chr5	36035765	36035765	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagaaatggtgacatcgcCcaccaaacagaccccgccaa	7	16	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36035765	A	A	36035765	1	1	103	0	1	0	0	0	0	0	0	0	17090	638	22	2		2	UGT3A2	5	36035765	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	69794	36035765	144879495	368	101317											
SLC1A3	6507	broad.mit.edu	37	chr5	36684013	36684013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagctggaattcctcaggCgggcctggtcactatggtca	14	11	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36684013	A	A	36684013	3	1	103	1	0	0	0	0	1	0	0	0	14546	768	27	3	1384	3	SLC1A3	5	36684013	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	648248	36684013	144231247	369	101318											
SLC1A3	6507	broad.mit.edu	37	chr5	36686154	36686154	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtttttccctcctccccAccctgcctgcagggatcgcc	7	20	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36686154	T	T	36686154	1	4	103	0	1	0	0	0	0	0	0	0	14546	174	6	5		5	SLC1A3	5	36686154	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2141	36686154	144229106	370	101319											
NIPBL	25836	broad.mit.edu	37	chr5	37052708	37052708	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttaagaaaataagtgctCtagaaattttatggataaag	7	2	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37052708	G	G	37052708	1	3	103	0	1	0	0	0	0	0	0	0	10523	928	32	4		4	NIPBL	5	37052708	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	366554	37052708	143862552	371	101320											
C7	730	broad.mit.edu	37	chr5	40964941	40964941	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggccagatgtggagaagaTttacggtggcttgttgggga	18	4	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40964941	G	G	40964941	3	3	103	1	0	0	0	0	1	0	0	0	2400	1490	52	5	1902	5	C7	5	40964941	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	3912233	40964941	139950319	372	101321											
ISL1	3670	broad.mit.edu	37	chr5	50687313	50687313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggaagaggctgaattccCaacaggagactctggtttaa	12	7	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50687313	A	A	50687313	1	1	103	0	1	0	0	0	0	0	0	0	7926	609	21	2		2	ISL1	5	50687313	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	9722372	50687313	130227947	373	101322											
DDX4	54514	broad.mit.edu	37	chr5	55059044	55059044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagataatacatccacaatgGgtggttttggagttggaaag	13	4	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55059044	T	T	55059044	3	4	103	1	0	0	0	0	1	0	0	0	4393	1232	43	2	261	2	DDX4	5	55059044	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4371731	55059044	125856216	374	101323											
ADAMTS6	11174	broad.mit.edu	37	chr5	64521877	64521877	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaaagataaaagtctcAaaaaccccaacagaaaggag	8	7	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64521877	C	C	64521877	1	2	103	0	1	0	0	0	0	0	0	0	270	145	5	5		5	ADAMTS6	5	64521877	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	9462833	64521877	116393383	375	101324											
RAD17	5884	broad.mit.edu	37	chr5	68695997	68695997	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattccaatgagaaatcaagGtaataacataggtttttctt	6	6	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68695997	A	A	68695997	5	1	103	1	0	0	0	0	0	0	1	0	13087	1275	44	4	1794	4	RAD17	5	68695997	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	4174120	68695997	112219263	376	101325											
ZNF366	167465	broad.mit.edu	37	chr5	71757220	71757220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttggggagcctttcccCgagaagccactggctgcagg	14	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71757220	A	A	71757220	3	1	103	1	0	0	0	0	1	0	0	0	17996	652	23	1	2146	1	ZNF366	5	71757220	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3061223	71757220	109158040	377	101326											
SV2C	22987	broad.mit.edu	37	chr5	75581080	75581080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtctcctccgtggtggCcctcacattcatgcctgaaa	9	14	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75581080	A	A	75581080	3	1	103	1	0	0	0	0	1	0	0	0	15537	739	26	3	1021	3	SV2C	5	75581080	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3823860	75581080	105334180	378	101327											
WDR41	55255	broad.mit.edu	37	chr5	76759072	76759072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaataccaataaaaatgTtaataggcttagctttcaca	5	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76759072	A	A	76759072	1	1	103	0	1	0	0	0	0	0	0	0	17421	1740	60	5		5	WDR41	5	76759072	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1177992	76759072	104156188	379	101328											
RASGRF2	5924	broad.mit.edu	37	chr5	80369242	80369242	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaagccccccatcagccaCgacgacgtcagcagtatttt	8	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80369242	T	T	80369242	2	4	103	1	0	0	0	0	0	0	0	1	13181	535	19	4		4	RASGRF2	5	80369242	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	3610170	80369242	100546018	380	101329											
PCSK1	5122	broad.mit.edu	37	chr5	95748052	95748052	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatattcaaaagccttctgGgctagccggccaggcccctc	9	16	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95748052	T	T	95748052	2	4	103	1	0	0	0	0	0	0	0	1	11694	1219	43	2		2	PCSK1	5	95748052	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	15378810	95748052	85167208	381	101330											
STARD4	134429	broad.mit.edu	37	chr5	110843034	110843034	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaactaatttaccgttttcTtagcaactcgccacttatct	4	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110843034	A	A	110843034	3	1	103	1	0	0	0	0	1	0	0	0	15377	1609	56	5	539	5	STARD4	5	110843034	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	15094982	110843034	70072226	382	101331											
AQPEP	206338	broad.mit.edu	37	chr5	115335492	115335492	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctaacattttacataatAtcctcagagaagatcacgcc	4	10	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115335492	G	G	115335492	3	3	103	1	0	0	0	0	1	0	0	0	836	449	16	5	1434	5	AQPEP	5	115335492	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	4492458	115335492	65579768	383	101332											
SEMA6A	57556	broad.mit.edu	37	chr5	115813658	115813658	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccatgagctacctaggacTgtttcctagccaccatggac	9	13	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115813658	G	G	115813658	1	3	103	0	1	0	0	0	0	0	0	0	14152	1595	55	5		5	SEMA6A	5	115813658	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	478166	115813658	65101602	384	101333											
FNIP1	96459	broad.mit.edu	37	chr5	131007483	131007483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgtttctatacatttaCaaaattcattgttctgcttg	5	7	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131007483	A	A	131007483	3	1	103	1	0	0	0	0	1	0	0	0	6033	478	17	3	866	3	FNIP1	5	131007483	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	15193825	131007483	49907777	385	101334											
ACSL6	23305	broad.mit.edu	37	chr5	131312363	131312363	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtcactttcagaaagcctGagaaatcagccaccacgttc	7	13	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131312363	C	C	131312363	4	2	103	1	0	0	0	0	0	1	0	0	181	1294	45	4	1330	4	ACSL6	5	131312363	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	304880	131312363	49602897	386	101335											
VDAC1	7416	broad.mit.edu	37	chr5	133308655	133308655	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgttccaggtattatcaGcagggtccaaactacatggc	9	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133308655	A	A	133308655	1	1	103	0	1	0	0	0	0	0	0	0	17273	986	34	4		4	VDAC1	5	133308655	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1996292	133308655	47606605	387	101336											
PHF15	23338	broad.mit.edu	37	chr5	133914622	133914622	+	Frame_Shift_Del	DEL	A	-	-													gtccagccctgcagccggggActgtcccatcctagccaccc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133914622	-	-	133914622	7	5	103	1	0	1	0	1	0	0	0	0	11921	275	10	0	2026	0	PHF15	5	133914622	Frame_Shift_Del	DEL	A	TCGA-38-4632-01A-01D-1753-08	605967	133914622	47000638	388	101337											
TRPC7	57113	broad.mit.edu	37	chr5	135692748	135692748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctgatggccagcagcaGcgcgtcccccacccgtgcca	11	18	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135692748	T	T	135692748	3	4	103	1	0	0	0	0	1	0	0	0	16709	962	34	3	2304	3	TRPC7	5	135692748	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1778126	135692748	45222512	389	101338											
CDC23	8697	broad.mit.edu	37	chr5	137542338	137542338	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaacgtcaaagtaggccttGgccagggtataggcatccat	11	9	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137542338	A	A	137542338	2	1	103	1	0	0	0	0	0	0	0	1	3091	1335	47	4		4	CDC23	5	137542338	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	1849590	137542338	43372922	390	101339											
PCDHA6	56142	broad.mit.edu	37	chr5	140208228	140208228	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgggctagatgtgaaaatAaacagtgatgacaataaaca	9	5	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140208228	G	G	140208228	3	3	103	1	0	0	0	0	1	0	0	0	11622	352	13	5	554	5	PCDHA6	5	140208228	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	2665890	140208228	40707032	391	101340											
PCDHB2	56133	broad.mit.edu	37	chr5	140475997	140475997	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcagaccgcggctccccGgcgttgagcagcgaggcgct	16	16	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140475997	A	A	140475997	2	1	103	1	0	0	0	0	0	0	0	1	11636	1103	39	4		4	PCDHB2	5	140475997	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	267769	140475997	40439263	392	101341											
PCDHB10	56126	broad.mit.edu	37	chr5	140574584	140574584	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatagccatgtttctattaGtttacttttaaatctcaaat	3	7	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140574584	A	A	140574584	1	1	103	0	1	0	0	0	0	0	0	0	11629	1044	36	4		4	PCDHB10	5	140574584	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	98587	140574584	40340676	393	101342											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744720	140744720	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccagatgagggaataaacGggaaattgacctactctttt	9	7	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140744720	A	A	140744720	3	1	103	1	0	0	0	0	1	0	0	0	11651	1116	39	4	825	4	PCDHGA5	5	140744720	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	170136	140744720	40170540	394	101343											
PCDHGA6	56109	broad.mit.edu	37	chr5	140755658	140755658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtggccgacaggatccccGacatcctggccgacctgggc	13	17	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140755658	T	T	140755658	3	4	103	1	0	0	0	0	1	0	0	0	11652	1058	37	3	2010	3	PCDHGA6	5	140755658	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	10938	140755658	40159602	395	101344											
PCDHGA12	26025	broad.mit.edu	37	chr5	140811758	140811758	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgtctctgtgaccgcccacGaccccgactgtgaagagaac	10	15	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140811758	C	C	140811758	3	2	103	1	0	0	0	0	1	0	0	0	11647	1058	37	4	1434	4	PCDHGA12	5	140811758	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	56100	140811758	40103502	396	101345											
DIAPH1	1729	broad.mit.edu	37	chr5	140957954	140957954	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggaacccaaaagtatccTctgtggttagaaacctaagc	9	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140957954	A	A	140957954	1	1	103	0	1	0	0	0	0	0	0	0	4558	1566	54	5		5	DIAPH1	5	140957954	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	146196	140957954	39957306	397	101346											
NR3C1	2908	broad.mit.edu	37	chr5	142779852	142779852	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtgctttggtctgtggTatacaatttcacattgccac	9	8	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142779852	A	A	142779852	3	1	103	1	0	0	0	0	1	0	0	0	10725	1638	57	5	1867	5	NR3C1	5	142779852	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	1821898	142779852	38135408	398	101347											
PPP2R2B	5521	broad.mit.edu	37	chr5	146070805	146070805	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagcttcacagttttatcTgtagtgggcaaccagattaa	8	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146070805	A	A	146070805	5	1	103	1	0	0	0	0	0	0	1	0	12486	1594	55	5	1022	5	PPP2R2B	5	146070805	Splice_Site	SNP	T	TCGA-38-4632-01A-01D-1753-08	3290953	146070805	34844455	399	101348											
ABLIM3	22885	broad.mit.edu	37	chr5	148521775	148521775	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaggaagcctggcatcTctggacacatgacccccagg	13	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148521775	A	A	148521775	1	1	103	0	1	0	0	0	0	0	0	0	96	1566	54	5		5	ABLIM3	5	148521775	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2450970	148521775	32393485	400	101349											
ABLIM3	22885	broad.mit.edu	37	chr5	148622135	148622135	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagatagggcttggccacacAaggagaggggggaggttaac	17	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148622135	C	C	148622135	1	2	103	0	1	0	0	0	0	0	0	0	96	145	5	5		5	ABLIM3	5	148622135	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	100360	148622135	32293125	401	101350											
ZNF300	91975	broad.mit.edu	37	chr5	150276158	150276158	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattttccacctccaaaacTctgatcaggtttttttcttg	5	10	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150276158	C	C	150276158	3	2	103	1	0	0	0	0	1	0	0	0	17957	1551	54	5	1175	5	ZNF300	5	150276158	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	1654023	150276158	30639102	402	101351											
FAT2	2196	broad.mit.edu	37	chr5	150905491	150905491	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatctgggtcactcaggatCagctgcaggactttgctgcc	12	11	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150905491	T	T	150905491	2	4	103	1	0	0	0	0	0	0	0	1	5747	813	29	4		4	FAT2	5	150905491	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	629333	150905491	30009769	403	101352											
GRIA1	2890	broad.mit.edu	37	chr5	153065836	153065836	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttaatgagaaaggacgcCggaccaactacacgctccac	9	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153065836	A	A	153065836	2	1	103	1	0	0	0	0	0	0	0	1	6833	643	23	1		1	GRIA1	5	153065836	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2160345	153065836	27849424	404	101353											
EBF1	1879	broad.mit.edu	37	chr5	158500252	158500252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattccatatggctttccCaggaatcaaaatcgctcagc	6	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158500252	A	A	158500252	1	1	103	0	1	0	0	0	0	0	0	0	4920	609	21	2		2	EBF1	5	158500252	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	5434416	158500252	22415008	405	101354											
ATP10B	23120	broad.mit.edu	37	chr5	160048044	160048044	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggaatatgaaggtactttTgcaataagtgaagccagata	11	5	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160048044	C	C	160048044	1	2	103	0	1	0	0	0	0	0	0	0	1121	1827	63	5		5	ATP10B	5	160048044	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1547792	160048044	20867216	406	101355											
GABRG2	2566	broad.mit.edu	37	chr5	161524813	161524813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacactggatcaccacccCcaacaggatgctgagaattt	8	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161524813	A	A	161524813	3	1	103	1	0	0	0	0	1	0	0	0	6232	623	22	2	511	2	GABRG2	5	161524813	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1476769	161524813	19390447	407	101356											
HMMR	3161	broad.mit.edu	37	chr5	162918138	162918138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatacaaactgttaccgaGctcctatggagtgtcaagaa	9	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162918138	T	T	162918138	3	4	103	1	0	0	0	0	1	0	0	0	7309	971	34	3	2216	3	HMMR	5	162918138	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1393325	162918138	17997122	408	101357											
MAT2B	27430	broad.mit.edu	37	chr5	162940737	162940737	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgagtttttagaaattAaggttttgtagatggttatt	10	1	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162940737	G	G	162940737	1	3	103	0	1	0	0	0	0	0	0	0	9423	377	13	5		5	MAT2B	5	162940737	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	22599	162940737	17974523	409	101358											
SLIT3	6586	broad.mit.edu	37	chr5	168175277	168175277	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggtggtgagatgacaGggtgcttggaggcagctggg	20	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168175277	A	A	168175277	1	1	103	0	1	0	0	0	0	0	0	0	14855	1015	35	4		4	SLIT3	5	168175277	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	5234540	168175277	12739983	410	101359											
LCP2	3937	broad.mit.edu	37	chr5	169714976	169714976	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttggaggagtacttacggCacccggagcttggggaactt	15	8	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169714976	G	G	169714976	2	3	103	1	0	0	0	0	0	0	0	1	8764	697	25	4		4	LCP2	5	169714976	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	1539699	169714976	11200284	411	101360											
GABRP	2568	broad.mit.edu	37	chr5	170235643	170235643	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacagtttgagcttcggaGgaatgttctgtatttcattt	9	6	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170235643	A	A	170235643	3	1	103	1	0	0	0	0	1	0	0	0	6234	1000	35	4	745	4	GABRP	5	170235643	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	520667	170235643	10679617	412	101361											
HRH2	3274	broad.mit.edu	37	chr5	175111326	175111326	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaggtaatagccctagCcattggtgcacaggatgggg	14	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175111326	A	A	175111326	1	1	103	0	1	0	0	0	0	0	0	0	7423	754	26	3		3	HRH2	5	175111326	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	4875683	175111326	5803934	413	101362											
GFPT2	9945	broad.mit.edu	37	chr5	179729392	179729392	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggggttatgtctctcctCtctgctgttaggtgcagttt	11	9	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179729392	A	A	179729392	1	1	103	0	1	0	0	0	0	0	0	0	6410	928	32	3		3	GFPT2	5	179729392	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4618066	179729392	1185868	414	101363											
FLT4	2324	broad.mit.edu	37	chr5	180048007	180048007	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggagtccgccaagtcgactCctgcagggggtggggtggag	19	9	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180048007	T	T	180048007	3	4	103	1	0	0	0	0	1	0	0	0	6002	869	30	4	1995	4	FLT4	5	180048007	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	318615	180048007	867253	415	101364											
DUSP22	56940	broad.mit.edu	37	chr6	348664	348664	+	Intron	SNP	G	T	T													cactgctgtttgtttccctgGttatgtgtggcaccatctct							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348664	T	T	348664	1	4	103	0	1	0	0	0	0	0	0	0	4861	1276	44	3		3	DUSP22	6	348664	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08		348664	170766403	416	101365	440	2									
DUSP22	56940	broad.mit.edu	37	chr6	348673	348673	+	Intron	DEL	G	-	-													ttgtttccctggttatgtgtGgcaccatctctgtggtgaag							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	348673	-	-	348673	6	5	103	0	1	1	0	1	0	0	0	0	4861	1363	47	0		0	DUSP22	6	348673	Intron	DEL	G	TCGA-38-4632-01A-01D-1753-08	9	348673	170766394	417	101366	440	2									
DUSP22	56940	broad.mit.edu	37	chr6	350824	350824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttctttcttcacagccGctccgggaattctgaagttc	8	11	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	350824	T	T	350824	3	4	103	1	0	0	0	0	1	0	0	0	4861	1087	38	3	541	3	DUSP22	6	350824	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2151	350824	170764243	418	101367											
GMDS	2762	broad.mit.edu	37	chr6	2117778	2117778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaactggaccgccgtaCaattccatggacctgagttt	9	10	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2117778	A	A	2117778	3	1	103	1	0	0	0	0	1	0	0	0	6550	478	17	3	994	3	GMDS	6	2117778	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1766954	2117778	168997289	419	101368											
CDYL	9425	broad.mit.edu	37	chr6	4715960	4715960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtaaattcctcttgttgGgattgtaattgcaggtggtc	12	5	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4715960	T	T	4715960	1	4	103	0	1	0	0	0	0	0	0	0	3215	1247	43	2		2	CDYL	6	4715960	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2598182	4715960	166399107	420	101369											
SIRT5	23408	broad.mit.edu	37	chr6	13599137	13599137	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atataggctgggagggagggTgtagggaataagaggcatca	18	3	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13599137	G	G	13599137	1	3	103	0	1	0	0	0	0	0	0	0	14454	1711	59	5		5	SIRT5	6	13599137	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	8883177	13599137	157515930	421	101370											
NUP153	9972	broad.mit.edu	37	chr6	17661804	17661804	+	Intron	DEL	C	-	-													ctgggtctcttcgaaccccaCccctacaggtctccccttac							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17661804	-	-	17661804	6	5	103	0	1	1	0	1	0	0	0	0	10850	522	18	0		0	NUP153	6	17661804	Intron	DEL	C	TCGA-38-4632-01A-01D-1753-08	4062667	17661804	153453263	422	101371											
MRS2	57380	broad.mit.edu	37	chr6	24418936	24418936	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagtttgagaccaacctGgccaacatggcgaaaccctg	11	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24418936	A	A	24418936	1	1	103	0	1	0	0	0	0	0	0	0	9945	1363	47	4		4	MRS2	6	24418936	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	6757132	24418936	146696131	423	101372											
FAM65B	9750	broad.mit.edu	37	chr6	25023946	25023946	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagcccacaccgtgtttgtCcgcgacttcgttcaggtaca	9	14	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25023946	A	A	25023946	1	1	103	0	1	0	0	0	0	0	0	0	5651	870	30	3		3	FAM65B	6	25023946	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	605010	25023946	146091121	424	101373											
SCGN	10590	broad.mit.edu	37	chr6	25652524	25652524	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacagttactcaaagctaatCagatagcgaaagaagcagga	9	7	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25652524	T	T	25652524	1	4	103	0	1	0	0	0	0	0	0	0	14016	841	29	4		4	SCGN	6	25652524	5'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	628578	25652524	145462543	425	101374											
SLC17A4	10050	broad.mit.edu	37	chr6	25777132	25777132	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttggtgctgtcttctgccAtcagcagcttctgtgaatca	9	11	6	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25777132	G	G	25777132	3	3	103	1	0	0	0	0	1	0	0	0	14532	217	8	5	1247	5	SLC17A4	6	25777132	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	124608	25777132	145337935	426	101375											
SLC17A3	10786	broad.mit.edu	37	chr6	25849906	25849906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacatacctgaaaaaaacGgccacaggtctatctgtggt	8	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25849906	T	T	25849906	1	4	103	0	1	0	0	0	0	0	0	0	14531	1131	39	1		1	SLC17A3	6	25849906	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	72774	25849906	145265161	427	101376											
SLC17A2	10246	broad.mit.edu	37	chr6	25918685	25918685	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggatgctcaggaaatggaGgcgttaggatttaagagaaa	14	3	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25918685	A	A	25918685	1	1	103	0	1	0	0	0	0	0	0	0	14530	1015	35	4		4	SLC17A2	6	25918685	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	68779	25918685	145196382	428	101377											
BTN3A1	11119	broad.mit.edu	37	chr6	26413399	26413399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctcaaactctctgcagcgGatgtgattctggatccaaaa	8	11	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26413399	T	T	26413399	3	4	103	1	0	0	0	0	1	0	0	0	1572	1174	41	3	1223	3	BTN3A1	6	26413399	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	494714	26413399	144701668	429	101378											
BTN2A1	11120	broad.mit.edu	37	chr6	26468861	26468861	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacccctggtggaagacacGccctcctcccctctggtcac	8	19	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26468861	A	A	26468861	1	1	103	0	1	0	0	0	0	0	0	0	1570	1102	38	4		4	BTN2A1	6	26468861	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	55462	26468861	144646206	430	101379											
OR10C1	442194	broad.mit.edu	37	chr6	29408414	29408414	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacagccctcctcatcctcTgcccctttggcctcatcctg	5	20	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29408414	C	C	29408414	3	2	103	1	0	0	0	0	1	0	0	0	10992	1580	55	5	624	5	OR10C1	6	29408414	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2939553	29408414	141706653	431	101380											
ZFP57	346171	broad.mit.edu	37	chr6	29643085	29643085	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcatctatagagcattcaTcctcttcatcagctctccat	5	13	6	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29643085	C	C	29643085	1	2	103	0	1	0	0	0	0	0	0	0	17777	1450	50	5		5	ZFP57	6	29643085	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	234671	29643085	141471982	432	101381											
HLA-G	3135	broad.mit.edu	37	chr6	29857397	29857397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggggtaaggagggagatgGgggtgtcatgtctcttaggg	20	3	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29857397	T	T	29857397	1	4	103	0	1	0	0	0	0	0	0	0	7279	1247	43	2		2	HLA-G	6	29857397	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	214312	29857397	141257670	433	101382											
MUC21	394263	broad.mit.edu	37	chr6	30955046	30955047	+	Nonsense_Mutation	DNP	CC	AA	AA													cacagccaccaactctgggtCcagcacgacctccagtggga							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	30955047	AA	AA	30955046	4	1	103	1	0	0	0	0	0	1	0	0	10071	855	30	3	1100	3	MUC21	6	30955046	Nonsense_Mutation	DNP	CC	TCGA-38-4632-01A-01D-1753-08	1097649	30955046	140160021	434	101383											
BAT2	7916	broad.mit.edu	37	chr6	31597268	31597268	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagttttttctttgctgaTtcctttgtccatgtgtgctt	7	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31597268	C	C	31597268	1	2	103	0	1	0	0	0	0	0	0	0	1324	1508	52	5		5	BAT2	6	31597268	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	642222	31597268	139517799	435	101384											
C2	717	broad.mit.edu	37	chr6	31903837	31903837	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaaatgccaactataaAggtacgggtgtcatcacgtg	11	8	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31903837	G	G	31903837	2	3	103	1	0	0	0	0	0	0	0	1	2096	86	3	5		5	C2	6	31903837	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	306569	31903837	139211230	436	101385											
TNXB	7148	broad.mit.edu	37	chr6	32011940	32011940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaacaatgacgcaggcaGgggcagggaggcttctccct	15	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32011940	A	A	32011940	1	1	103	0	1	0	0	0	0	0	0	0	16469	1015	35	4		4	TNXB	6	32011940	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	108103	32011940	139103127	437	101386											
ATF6B	1388	broad.mit.edu	37	chr6	32087639	32087639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtttccaggcataggagCgggaacgatgctcttcctct	13	10	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32087639	A	A	32087639	3	1	103	1	0	0	0	0	1	0	0	0	1089	768	27	3	1223	3	ATF6B	6	32087639	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	75699	32087639	139027428	438	101387											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33095795	33095795	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagatcctggagatgctggAaatgaccccccagcagggaa	12	12	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33095795	T	T	33095795	1	4	103	0	1	0	0	0	0	0	0	0	7270	261	9	5		5	HLA-DPB1	6	33095795	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1008156	33095795	138019272	439	101388											
KIFC1	3833	broad.mit.edu	37	chr6	33367932	33367932	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcccatagactgggcagtCcccggaatctctttaatggt	10	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33367932	T	T	33367932	1	4	103	0	1	0	0	0	0	0	0	0	8382	870	30	4		4	KIFC1	6	33367932	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	272137	33367932	137747135	440	101389											
KIFC1	3833	broad.mit.edu	37	chr6	33371703	33371703	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggccctggggacagagCgcacaacactggaggggcat	15	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33371703	T	T	33371703	3	4	103	1	0	0	0	0	1	0	0	0	8382	768	27	4	575	4	KIFC1	6	33371703	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3771	33371703	137743364	441	101390											
TCP11	6954	broad.mit.edu	37	chr6	35088592	35088592	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacctaataagcaactttcTattcctaaaaagagatagag	5	8	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35088592	C	C	35088592	1	2	103	0	1	0	0	0	0	0	0	0	15835	1537	53	5		5	TCP11	6	35088592	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1716889	35088592	136026475	442	101391											
TEAD3	7005	broad.mit.edu	37	chr6	35443642	35443642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagtgggcctggatgttGcacctctggggtggggaagg	19	7	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35443642	T	T	35443642	1	4	103	0	1	0	0	0	0	0	0	0	15862	1334	46	3		3	TEAD3	6	35443642	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	355050	35443642	135671425	443	101392											
TULP1	7287	broad.mit.edu	37	chr6	35478796	35478796	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcctcctctgcaggtAgaaactcttcataatggggg	9	13	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35478796	G	G	35478796	1	3	103	0	1	0	0	0	0	0	0	0	16899	435	15	5		5	TULP1	6	35478796	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	35154	35478796	135636271	444	101393											
MDGA1	266727	broad.mit.edu	37	chr6	37620084	37620084	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcactctctttgatcacgtCaggagtgatctggaatgtag	10	9	5	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37620084	A	A	37620084	3	1	103	1	0	0	0	0	1	0	0	0	9499	826	29	3	1896	3	MDGA1	6	37620084	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2141288	37620084	133494983	445	101394											
ZNF318	24149	broad.mit.edu	37	chr6	43306991	43306991	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcaggggcccccttagtcTcaggggccccctttccacca	9	18	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43306991	A	A	43306991	3	1	103	1	0	0	0	0	1	0	0	0	17962	1551	54	5	2098	5	ZNF318	6	43306991	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	5686907	43306991	127808076	446	101395											
MRPL14	64928	broad.mit.edu	37	chr6	44081627	44081627	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccttggaatactcgccttCccgcttgcgcaggctggtgg	12	14	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44081627	T	T	44081627	3	4	103	1	0	0	0	0	1	0	0	0	9873	864	30	4	50	4	MRPL14	6	44081627	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	774636	44081627	127033440	447	101396											
GSTA5	221357	broad.mit.edu	37	chr6	52712788	52712788	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggctgccaggctgtagaaAtttcttcaccatgggcaggt	13	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52712788	G	G	52712788	1	3	103	0	1	0	0	0	0	0	0	0	6900	116	4	5		5	GSTA5	6	52712788	5'Flank	SNP	A	TCGA-38-4632-01A-01D-1753-08	8631161	52712788	118402279	448	101397											
BMP5	653	broad.mit.edu	37	chr6	55739810	55739810	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgacatttctgagcacaAcatcctcaccgattttcctg	6	13	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55739810	G	G	55739810	1	3	103	0	1	0	0	0	0	0	0	0	1469	58	2	5		5	BMP5	6	55739810	5'UTR	SNP	A	TCGA-38-4632-01A-01D-1753-08	3027022	55739810	115375257	449	101398											
COL21A1	81578	broad.mit.edu	37	chr6	56035886	56035886	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatatcaaatcccctttcAtcacgagctgccactggaat	6	12	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56035886	T	T	56035886	3	4	103	1	0	0	0	0	1	0	0	0	3712	214	8	5	2300	5	COL21A1	6	56035886	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	296076	56035886	115079181	450	101399											
BAI3	577	broad.mit.edu	37	chr6	70034899	70034899	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttataagaaaacgctttTtgtgccttggatggggtaag	13	5	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70034899	C	C	70034899	2	2	103	1	0	0	0	0	0	0	0	1	1305	1838	64	5		5	BAI3	6	70034899	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	13999013	70034899	101080168	451	101400											
DPPA5	340168	broad.mit.edu	37	chr6	74063858	74063858	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatggctttcagcagccGcgtctggacctggaacacct	11	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74063858	T	T	74063858	2	4	103	1	0	0	0	0	0	0	0	1	4777	1086	38	3		3	DPPA5	6	74063858	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	4028959	74063858	97051209	452	101401											
COL12A1	1303	broad.mit.edu	37	chr6	75796349	75796349	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatacacatccatctacgTatgtaatggttaaagtatat	5	6	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75796349	C	C	75796349	1	2	103	0	1	0	0	0	0	0	0	0	3701	1653	57	5		5	COL12A1	6	75796349	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1732491	75796349	95318718	453	101402											
KIAA1009	22832	broad.mit.edu	37	chr6	84872875	84872875	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttttacctgtgacataagCaatctgatctttggcttggt	9	7	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84872875	G	G	84872875	3	3	103	1	0	0	0	0	1	0	0	0	8273	710	25	4	1747	4	KIAA1009	6	84872875	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	9076526	84872875	86242192	454	101403											
ASCC3	10973	broad.mit.edu	37	chr6	101103674	101103674	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcactgcttcttccacattAgtaactgttcccagagcaat	5	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101103674	G	G	101103674	2	3	103	1	0	0	0	0	0	0	0	1	1037	407	15	5		5	ASCC3	6	101103674	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	16230799	101103674	70011393	455	101404											
PDSS2	57107	broad.mit.edu	37	chr6	107533374	107533374	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattctgaacctcagcatcaTgctttgctaattccattgca	5	11	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107533374	G	G	107533374	3	3	103	1	0	0	0	0	1	0	0	0	11788	1464	51	5	400	5	PDSS2	6	107533374	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	6429700	107533374	63581693	456	101405											
AKD1	221264	broad.mit.edu	37	chr6	109954214	109954214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaatactttacatggtggtCctggcataggtggaagcaga	13	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109954214	A	A	109954214	3	1	103	1	0	0	0	0	1	0	0	0	460	855	30	3	4701	3	AKD1	6	109954214	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2420840	109954214	61160853	457	101406											
CDC40	51362	broad.mit.edu	37	chr6	110522870	110522870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcatgtttgagcagcaaaGgagaacttttgcaacatatg	9	6	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110522870	T	T	110522870	3	4	103	1	0	0	0	0	1	0	0	0	3100	1000	35	2	396	2	CDC40	6	110522870	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	568656	110522870	60592197	458	101407											
FAM26F	441168	broad.mit.edu	37	chr6	116784347	116784347	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaactgttgcttgttcatCatcataactggcgagtagtt	8	7	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116784347	A	A	116784347	1	1	103	0	1	0	0	0	0	0	0	0	5602	841	29	3		3	FAM26F	6	116784347	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	6261477	116784347	54330720	459	101408											
HEY2	23493	broad.mit.edu	37	chr6	126080786	126080786	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctctgtccttcgcgggGgcattccccatgcttccccc	8	19	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126080786	T	T	126080786	2	4	103	1	0	0	0	0	0	0	0	1	7146	1219	43	2		2	HEY2	6	126080786	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	9296439	126080786	45034281	460	101409											
LAMA2	3908	broad.mit.edu	37	chr6	129478613	129478613	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactctaattccacccatgCcatgggtaaaaacagttctt	5	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129478613	G	G	129478613	1	3	103	0	1	0	0	0	0	0	0	0	8678	754	26	4		4	LAMA2	6	129478613	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3397827	129478613	41636454	461	101410											
ENPP3	5169	broad.mit.edu	37	chr6	132054860	132054860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccacggcttcctctatcctCctggttagtagaactctttt	6	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132054860	T	T	132054860	3	4	103	1	0	0	0	0	1	0	0	0	5173	855	30	4	2168	4	ENPP3	6	132054860	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2576247	132054860	39060207	462	101411											
EYA4	2070	broad.mit.edu	37	chr6	133802682	133802682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggagttctgggtcaaagtCcagaggaagaggccggaaaa	15	6	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133802682	A	A	133802682	3	1	103	1	0	0	0	0	1	0	0	0	5374	855	30	3	1094	3	EYA4	6	133802682	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1747822	133802682	37312385	463	101412											
EYA4	2070	broad.mit.edu	37	chr6	133833817	133833817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcaagcatggtaacaagCatcatttagaaaacaaataa	5	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133833817	A	A	133833817	1	1	103	0	1	0	0	0	0	0	0	0	5374	725	25	3		3	EYA4	6	133833817	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	31135	133833817	37281250	464	101413											
UTRN	7402	broad.mit.edu	37	chr6	144803498	144803498	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaacttctttgtaatagaAttcgaggaaagtgccacacg	8	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144803498	G	G	144803498	3	3	103	1	0	0	0	0	1	0	0	0	17230	101	4	5	3763	5	UTRN	6	144803498	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	10969681	144803498	26311569	465	101414											
PNLDC1	154197	broad.mit.edu	37	chr6	160241522	160241522	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcctgggcccttctcgcGttcatccttggaagatctgg	11	13	3	1	rs144377714		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160241522	A	A	160241522	2	1	103	1	0	0	0	0	0	0	0	1	12243	1132	40	4		4	PNLDC1	6	160241522	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	15438024	160241522	10873545	466	101415											
PLG	5340	broad.mit.edu	37	chr6	161137586	161137586	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcccgactgtgcctagcaCacagcaggtgctcaatgttt	10	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161137586	T	T	161137586	1	4	103	0	1	0	0	0	0	0	0	0	12181	493	17	4		4	PLG	6	161137586	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	896064	161137586	9977481	467	101416											
C6orf118	168090	broad.mit.edu	37	chr6	165714964	165714964	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccggagctctgccccgagAggtttgccccagagctgtgc	13	16	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165714964	T	T	165714964	1	4	103	0	1	0	0	0	0	0	0	0	2346	319	11	5		5	C6orf118	6	165714964	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	4577378	165714964	5400103	468	101417											
PDE10A	10846	broad.mit.edu	37	chr6	165829541	165829541	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgactattgatagcagaGttggttcagagaagaaaact	10	5	1	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165829541	T	T	165829541	1	4	103	0	1	0	0	0	0	0	0	0	11724	1044	36	3		3	PDE10A	6	165829541	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	114577	165829541	5285526	469	101418											
SMOC2	64094	broad.mit.edu	37	chr6	168999393	168999393	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcctgctccggggtgaagGaggaccacatcgttcttggc	13	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168999393	T	T	168999393	1	4	103	0	1	0	0	0	0	0	0	0	14916	1189	41	3		3	SMOC2	6	168999393	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3169852	168999393	2115674	470	101419											
THBS2	7058	broad.mit.edu	37	chr6	169648423	169648423	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggccaggctctgcctgctCaagcatcgcatcaccagacg	10	15	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169648423	A	A	169648423	1	1	103	0	1	0	0	0	0	0	0	0	15977	841	29	3		3	THBS2	6	169648423	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	649030	169648423	1466644	471	101420											
INTS1	26173	broad.mit.edu	37	chr7	1539273	1539273	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcctcgatgtacacctgtGtggcagccacaccctcagcc	9	16	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1539273	A	A	1539273	1	1	103	0	1	0	0	0	0	0	0	0	7845	1392	48	4		4	INTS1	7	1539273	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08		1539273	157599390	472	101421											
EIF3B	8662	broad.mit.edu	37	chr7	2402421	2402421	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagttcagacttggccacaAggaagtggacgttgacgtgc	14	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2402421	G	G	2402421	1	3	103	0	1	0	0	0	0	0	0	0	5053	87	3	5		5	EIF3B	7	2402421	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	863148	2402421	156736242	473	101422											
IQCE	23288	broad.mit.edu	37	chr7	2611710	2611710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaccagcacgacactgacGgctggcgtctatcagtgatt	10	11	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2611710	T	T	2611710	1	4	103	0	1	0	0	0	0	0	0	0	7876	1131	39	1		1	IQCE	7	2611710	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	209289	2611710	156526953	474	101423											
CARD11	84433	broad.mit.edu	37	chr7	2968426	2968426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcccgcctcctactcagGcggcatggaggcagcgagcc	14	16	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2968426	A	A	2968426	1	1	103	0	1	0	0	0	0	0	0	0	2671	1218	42	4		4	CARD11	7	2968426	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	356716	2968426	156170237	475	101424											
RSPH10B2	728194	broad.mit.edu	37	chr7	5977705	5977705	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacatgcacacacacgcacaGacacgcacacacatatatta	4	15	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5977705	C	C	5977705	1	2	103	0	1	0	0	0	0	0	0	0	13815	957	33	4		4	RSPH10B2	7	5977705	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3009279	5977705	153160958	476	101425											
THSD7A	221981	broad.mit.edu	37	chr7	11441426	11441426	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacggtagcactcaccataAcatgattttgtttctaacat	6	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11441426	G	G	11441426	2	3	103	1	0	0	0	0	0	0	0	1	16002	41	2	5		5	THSD7A	7	11441426	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	5463721	11441426	147697237	477	101426											
HDAC9	9734	broad.mit.edu	37	chr7	18705919	18705919	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcttcagggggaccaggcGatgcaggaagacagagcgcc	17	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18705919	T	T	18705919	2	4	103	1	0	0	0	0	0	0	0	1	7081	1045	37	3		3	HDAC9	7	18705919	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	7264493	18705919	140432744	478	101427											
ABCB5	340273	broad.mit.edu	37	chr7	20687653	20687653	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatccatagaaggaactgtGgaatttaaaaatgtttcttt	8	4	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20687653	T	T	20687653	1	4	103	0	1	0	0	0	0	0	0	0	44	1335	47	2		2	ABCB5	7	20687653	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	1981734	20687653	138451010	479	101428											
ABCB5	340273	broad.mit.edu	37	chr7	20698250	20698250	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gattttagatgaggctacgtCtgccctggattcagaaagca	11	8	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20698250	A	A	20698250	3	1	103	1	0	0	0	0	1	0	0	0	44	913	32	3	1708	3	ABCB5	7	20698250	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	10597	20698250	138440413	480	101429											
CDCA7L	55536	broad.mit.edu	37	chr7	21951455	21951455	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatgaggagctactgaacGggtacagagcttctgatgga	14	6	1	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21951455	A	A	21951455	1	1	103	0	1	0	0	0	0	0	0	0	3121	1131	39	4		4	CDCA7L	7	21951455	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1253205	21951455	137187208	481	101430											
MGC87042	256227	broad.mit.edu	37	chr7	22532984	22532984	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacttgtatctgtaggatcGcctcattgcgtaagacagag	10	9	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22532984	A	A	22532984	4	1	103	1	0	0	0	0	0	1	0	0	9647	1095	38	4	521	4	MGC87042	7	22532984	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	581529	22532984	136605679	482	101431											
HOXA4	3201	broad.mit.edu	37	chr7	27169274	27169274	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagagagaaggtggggtGgggaagagcaattggacatc	20	3	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27169274	A	A	27169274	1	1	103	0	1	0	0	0	0	0	0	0	7361	1363	47	4		4	HOXA4	7	27169274	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	4636290	27169274	131969389	483	101432											
CHN2	1124	broad.mit.edu	37	chr7	29440108	29440108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctattgttatcattccaCactgtgcttatttctaacgt	5	10	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29440108	A	A	29440108	1	1	103	0	1	0	0	0	0	0	0	0	3394	493	17	3		3	CHN2	7	29440108	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2270834	29440108	129698555	484	101433											
CHN2	1124	broad.mit.edu	37	chr7	29440373	29440373	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagagaaaaagtatccagaAggctgagcaggtctaaaaat	10	6	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29440373	G	G	29440373	3	3	103	1	0	0	0	0	1	0	0	0	3394	63	3	5	527	5	CHN2	7	29440373	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	265	29440373	129698290	485	101434											
CRHR2	1395	broad.mit.edu	37	chr7	30702210	30702210	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggactgcgctgggggtggaGggcagggccaggctctggtc	21	10	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30702210	A	A	30702210	1	1	103	0	1	0	0	0	0	0	0	0	3904	1015	35	4		4	CRHR2	7	30702210	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1261837	30702210	128436453	486	101435											
NEUROD6	63974	broad.mit.edu	37	chr7	31378648	31378648	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttgtcttttttttcctaaGacccctccttctaggcaacc	5	13	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31378648	T	T	31378648	3	4	103	1	0	0	0	0	1	0	0	0	10446	942	33	3	782	3	NEUROD6	7	31378648	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	676438	31378648	127760015	487	101436											
CCDC129	223075	broad.mit.edu	37	chr7	31617894	31617894	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgagcaagcagtggccttGctcatctatgccggccaagc	11	13	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31617894	A	A	31617894	3	1	103	1	0	0	0	0	1	0	0	0	2790	1319	46	4	1042	4	CCDC129	7	31617894	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	239246	31617894	127520769	488	101437											
BMPER	168667	broad.mit.edu	37	chr7	34118560	34118560	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggacgtgtcagtacgttttGacaaaagactgctcctcccc	10	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34118560	A	A	34118560	2	1	103	1	0	0	0	0	0	0	0	1	1474	1281	45	4		4	BMPER	7	34118560	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	2500666	34118560	125020103	489	101438											
KIAA0895	23366	broad.mit.edu	37	chr7	36396649	36396649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttctctaagttggtgggTtttatagcagtcaatataca	8	6	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36396649	A	A	36396649	3	1	103	1	0	0	0	0	1	0	0	0	8267	1722	60	5	853	5	KIAA0895	7	36396649	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2278089	36396649	122742014	490	101439											
ANLN	54443	broad.mit.edu	37	chr7	36464304	36464304	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgcgtaggtgcaaaagAaagatccctcaggccttgat	11	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36464304	G	G	36464304	3	3	103	1	0	0	0	0	1	0	0	0	694	247	9	5	2728	5	ANLN	7	36464304	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	67655	36464304	122674359	491	101440											
TXNDC3	51314	broad.mit.edu	37	chr7	37927904	37927904	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcacagtttgcgatggacAgtttgccggtcaaccagttg	13	9	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37927904	G	G	37927904	3	3	103	1	0	0	0	0	1	0	0	0	16924	188	7	5	1323	5	TXNDC3	7	37927904	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	1463600	37927904	121210759	492	101441											
AMPH	273	broad.mit.edu	37	chr7	38462040	38462040	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagttgcagatcatactcTggtctgtctgcattgtgaat	9	9	4	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38462040	A	A	38462040	3	1	103	1	0	0	0	0	1	0	0	0	588	1580	55	5	858	5	AMPH	7	38462040	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	534136	38462040	120676623	493	101442											
POU6F2	11281	broad.mit.edu	37	chr7	39503654	39503654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggcttgggcagggctgGctaccttgcagctggctatt	15	11	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39503654	T	T	39503654	1	4	103	0	1	0	0	0	0	0	0	0	12381	1218	42	3		3	POU6F2	7	39503654	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1041614	39503654	119635009	494	101443											
AEBP1	165	broad.mit.edu	37	chr7	44152342	44152342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatgaggacgaggtctcCgaggcccaggagactccaga	16	10	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44152342	A	A	44152342	2	1	103	1	0	0	0	0	0	0	0	1	349	639	23	1		1	AEBP1	7	44152342	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	4648688	44152342	114986321	495	101444											
MYL7	58498	broad.mit.edu	37	chr7	44179887	44179887	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggtgcaggctccctgcCtggccaagggtgcccagctc	15	15	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44179887	T	T	44179887	1	4	103	0	1	0	0	0	0	0	0	0	10147	696	24	4		4	MYL7	7	44179887	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	27545	44179887	114958776	496	101445											
CAMK2B	816	broad.mit.edu	37	chr7	44259817	44259817	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccggatgtaagcgatgcaGgcggcatcctctccaatgac	12	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44259817	T	T	44259817	2	4	103	1	0	0	0	0	0	0	0	1	2626	987	35	2		2	CAMK2B	7	44259817	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	79930	44259817	114878846	497	101446											
PKD1L1	168507	broad.mit.edu	37	chr7	47937647	47937647	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggaggatgagggtctgtcTgtgagtgtccacagcagcag	17	8	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47937647	A	A	47937647	4	1	103	1	0	0	0	0	0	1	0	0	12059	1588	55	5	6516	5	PKD1L1	7	47937647	Nonsense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	3677830	47937647	111201016	498	101447											
POM121L12	285877	broad.mit.edu	37	chr7	53103526	53103526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgccagagtccctggccCctgaggtccctgactcagag	13	15	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103526	A	A	53103526	2	1	103	1	0	0	0	0	0	0	0	1	12336	610	22	2		2	POM121L12	7	53103526	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	5165879	53103526	106035137	499	101448											
MRPS17	51373	broad.mit.edu	37	chr7	56022592	56022592	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgatttgcttctctccctCtctcaacagtattttaataa	3	11	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56022592	T	T	56022592	1	4	103	0	1	0	0	0	0	0	0	0	9921	928	32	4		4	MRPS17	7	56022592	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2919066	56022592	103116071	500	101449											
ZNF716	441234	broad.mit.edu	37	chr7	57510109	57510109	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtggctgtagcaggacCcaaacttcctcgcagtcagc	11	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57510109	T	T	57510109	1	4	103	0	1	0	0	0	0	0	0	0	18247	638	22	4		4	ZNF716	7	57510109	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1487517	57510109	101628554	501	101450											
WBSCR17	64409	broad.mit.edu	37	chr7	71175943	71175943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatggacagagccagcaccCagagtagctgcaagaggctg	14	10	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71175943	A	A	71175943	1	1	103	0	1	0	0	0	0	0	0	0	17391	609	21	2		2	WBSCR17	7	71175943	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	13665834	71175943	87962720	502	101451											
ELN	2006	broad.mit.edu	37	chr7	73482908	73482908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggagcctccattcgaGtgggtcagagcaggcgggga	16	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73482908	T	T	73482908	1	4	103	0	1	0	0	0	0	0	0	0	5113	1044	36	3		3	ELN	7	73482908	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2306965	73482908	85655755	503	101452											
MAGI2	9863	broad.mit.edu	37	chr7	78150963	78150963	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggggtaccgtagtaattgtCtgcaaacaataccaaaacat	8	8	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78150963	A	A	78150963	5	1	103	1	0	0	0	0	0	0	1	0	9283	927	32	3	3905	3	MAGI2	7	78150963	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	4668055	78150963	80987700	504	101453											
HGF	3082	broad.mit.edu	37	chr7	81374416	81374416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacctcgataactctcccCattgcaggtcatgcattcaa	7	13	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81374416	A	A	81374416	3	1	103	1	0	0	0	0	1	0	0	0	7152	594	21	2	1604	2	HGF	7	81374416	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3223453	81374416	77764247	505	101454											
PCLO	27445	broad.mit.edu	37	chr7	82582364	82582364	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatgtagaaggtctgttcTgaagaaattggaatttctac	11	4	3	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82582364	C	C	82582364	2	2	103	1	0	0	0	0	0	0	0	1	11677	1567	55	5		5	PCLO	7	82582364	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	1207948	82582364	76556299	506	101455											
ABCB1	5243	broad.mit.edu	37	chr7	87178743	87178743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccagcaggaggatcttgGggttgcgaaccagggcacgt	15	10	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87178743	T	T	87178743	3	4	103	1	0	0	0	0	1	0	0	0	40	1232	43	2	2256	2	ABCB1	7	87178743	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4596379	87178743	71959920	507	101456											
RUNDC3B	154661	broad.mit.edu	37	chr7	87459223	87459223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagatactccctcattaCttggcctctgtggatctcta	8	11	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87459223	A	A	87459223	3	1	103	1	0	0	0	0	1	0	0	0	13856	565	20	3	1346	3	RUNDC3B	7	87459223	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	280480	87459223	71679440	508	101457											
ZNF804B	219578	broad.mit.edu	37	chr7	88966205	88966205	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctcacttaaatccagcCacaacttctatcatccactt	3	15	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88966205	A	A	88966205	2	1	103	1	0	0	0	0	0	0	0	1	18300	581	21	2		2	ZNF804B	7	88966205	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	1506982	88966205	70172458	509	101458											
GTPBP10	85865	broad.mit.edu	37	chr7	89975947	89975947	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcatgcgccagtccgcagGtgtgggcggaggagaaatcg	17	10	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89975947	T	T	89975947	1	4	103	0	1	0	0	0	0	0	0	0	6944	1276	44	3		3	GTPBP10	7	89975947	5'Flank	SNP	G	TCGA-38-4632-01A-01D-1753-08	1009742	89975947	69162716	510	101459											
PTCD1	26024	broad.mit.edu	37	chr7	99031015	99031016	+	Frame_Shift_Ins	INS	-	A	A													cctccttcagcatctgcctcINStcaaacaggtccagggcttc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99031016	A	A	99031015	7	5	103	1	0	1	1	0	0	0	0	0	12833	912	32	0	1646	0	PTCD1	7	99031015	Frame_Shift_Ins	INS	-	TCGA-38-4632-01A-01D-1753-08	9055068	99031015	60107648	511	101460											
ZAN	7455	broad.mit.edu	37	chr7	100369426	100369426	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacatggccctgttccttccCggcccctcccctggctcatc	7	21	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100369426	G	G	100369426	1	3	103	0	1	0	0	0	0	0	0	0	17640	667	23	4		4	ZAN	7	100369426	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1338411	100369426	58769237	512	101461											
ZAN	7455	broad.mit.edu	37	chr7	100374023	100374023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggagaaaaactgttctcGtgcttccccagcaccgaaaa	9	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100374023	T	T	100374023	1	4	103	0	1	0	0	0	0	0	0	0	17640	1160	40	3		3	ZAN	7	100374023	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	4597	100374023	58764640	513	101462											
SRRT	51593	broad.mit.edu	37	chr7	100473278	100473278	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagagagcgcagcgacTacgaccgttcccgcgagaga	13	12	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100473278	A	A	100473278	3	1	103	1	0	0	0	0	1	0	0	0	15290	1522	53	5	69	5	SRRT	7	100473278	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	99255	100473278	58665385	514	101463											
MUC17	140453	broad.mit.edu	37	chr7	100674548	100674548	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggaaggtggctcacctGcgaaagggctagagcgaccc	15	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100674548	T	T	100674548	1	4	103	0	1	0	0	0	0	0	0	0	10068	1334	46	3		3	MUC17	7	100674548	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	201270	100674548	58464115	515	101464											
PLOD3	8985	broad.mit.edu	37	chr7	100856219	100856219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttcccaggtagttgagCtgcagctgttggggacagac	14	8	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100856219	A	A	100856219	3	1	103	1	0	0	0	0	1	0	0	0	12198	796	28	3	1481	3	PLOD3	7	100856219	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	181671	100856219	58282444	516	101465											
RELN	5649	broad.mit.edu	37	chr7	103132490	103132490	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatctaaaacaaacataaaCaatcaatacacaggtaagat	3	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103132490	G	G	103132490	1	3	103	0	1	0	0	0	0	0	0	0	13328	493	17	4		4	RELN	7	103132490	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2276271	103132490	56006173	517	101466											
RELN	5649	broad.mit.edu	37	chr7	103207069	103207069	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgttgcggttgccaccatcGaaatgccgttgcaggtgtct	12	10	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103207069	A	A	103207069	4	1	103	1	0	0	0	0	0	1	0	0	13328	1066	37	4	5792	4	RELN	7	103207069	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	74579	103207069	55931594	518	101467											
DLD	1738	broad.mit.edu	37	chr7	107557757	107557757	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagttgctggtccaatgctGgctcacaaagcagaggatga	13	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107557757	A	A	107557757	2	1	103	1	0	0	0	0	0	0	0	1	4591	1335	47	4		4	DLD	7	107557757	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	4350688	107557757	51580906	519	101468											
LAMB1	3912	broad.mit.edu	37	chr7	107642135	107642135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttctgcgcagccgtaGctgaactcgggttcctgagc	12	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107642135	T	T	107642135	3	4	103	1	0	0	0	0	1	0	0	0	8682	962	34	3	5407	3	LAMB1	7	107642135	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	84378	107642135	51496528	520	101469											
DNAJB9	4189	broad.mit.edu	37	chr7	108213544	108213544	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaagcgttttgaaaatcAtttccagacacgccaggatg	9	9	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108213544	G	G	108213544	3	3	103	1	0	0	0	0	1	0	0	0	4667	217	8	5	425	5	DNAJB9	7	108213544	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	571409	108213544	50925119	521	101470											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518831	113518831	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccttcatgtggatcaaaCgctgtttcctttacctcgat	6	13	2	0	rs34610491	byFrequency;by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113518831	A	A	113518831	2	1	103	1	0	0	0	0	0	0	0	1	12472	523	19	3		3	PPP1R3A	7	113518831	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	5305287	113518831	45619832	522	101471											
C7orf58	79974	broad.mit.edu	37	chr7	120906170	120906170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaatttgaagggctgtcCttcaaacagttaggtagtag	10	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120906170	A	A	120906170	1	1	103	0	1	0	0	0	0	0	0	0	2430	696	24	2		2	C7orf58	7	120906170	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	7387339	120906170	38232493	523	101472											
FLNC	2318	broad.mit.edu	37	chr7	128487051	128487051	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaactggaaggaagttgggtAagaatgttcatagagaggac	14	3	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128487051	T	T	128487051	1	4	103	0	1	0	0	0	0	0	0	0	5993	377	13	5		5	FLNC	7	128487051	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	7580881	128487051	30651612	524	101473											
SMO	6608	broad.mit.edu	37	chr7	128848686	128848686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcaacgagaccatgctgCgcctgggtgagtggccccgg	15	12	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128848686	A	A	128848686	3	1	103	1	0	0	0	0	1	0	0	0	14914	768	27	3	1377	3	SMO	7	128848686	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	361635	128848686	30289977	525	101474											
AKR1D1	6718	broad.mit.edu	37	chr7	137792057	137792057	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtgacctgcagtgtcctGgtaggtgactgggtgaatgg	17	7	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137792057	C	C	137792057	1	2	103	0	1	0	0	0	0	0	0	0	473	1363	47	4		4	AKR1D1	7	137792057	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	8943371	137792057	21346606	526	101475											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138749476	138749476	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctagaacacaggtcttcTgatggccactagcttgcact	9	12	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138749476	C	C	138749476	1	2	103	0	1	0	0	0	0	0	0	0	17701	1595	55	5		5	ZC3HAV1	7	138749476	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	957419	138749476	20389187	527	101476											
PRSS37	136242	broad.mit.edu	37	chr7	141539040	141539040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaatatcttcagacattGccaagtgtaccctgtagaga	7	9	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141539040	T	T	141539040	1	4	103	0	1	0	0	0	0	0	0	0	12732	1334	46	3		3	PRSS37	7	141539040	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2789564	141539040	17599623	528	101477											
MGAM	8972	broad.mit.edu	37	chr7	141767216	141767216	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccttcctggtcagccctgtCctggagcgcgtgagtatgga	14	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141767216	T	T	141767216	1	4	103	0	1	0	0	0	0	0	0	0	9634	870	30	4		4	MGAM	7	141767216	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	228176	141767216	17371447	529	101478											
MGAM	8972	broad.mit.edu	37	chr7	141795597	141795597	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaattcttccaaattaaaGacatgattgccttttgacat	5	7	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141795597	T	T	141795597	1	4	103	0	1	0	0	0	0	0	0	0	9634	957	33	3		3	MGAM	7	141795597	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	28381	141795597	17343066	530	101479											
C7orf34	135927	broad.mit.edu	37	chr7	142637531	142637531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccagcaggaagaagacCagtcgtccaagacggcagct	13	12	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142637531	A	A	142637531	3	1	103	1	0	0	0	0	1	0	0	0	2414	595	21	2	307	2	C7orf34	7	142637531	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	841934	142637531	16501132	531	101480											
OR6V1	346517	broad.mit.edu	37	chr7	142749355	142749355	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctgtttcaagttcaaTggttctctgtctctatctct	5	10	7	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142749355	G	G	142749355	1	3	103	0	1	0	0	0	0	0	0	0	11305	1479	51	5		5	OR6V1	7	142749355	5'Flank	SNP	T	TCGA-38-4632-01A-01D-1753-08	111824	142749355	16389308	532	101481											
TAS2R40	259286	broad.mit.edu	37	chr7	142919937	142919937	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagctactttctcatcctcTacattttcaatgcaattgct	3	13	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142919937	C	C	142919937	3	2	103	1	0	0	0	0	1	0	0	0	15697	1522	53	5	768	5	TAS2R40	7	142919937	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	170582	142919937	16218726	533	101482											
FAM131B	9715	broad.mit.edu	37	chr7	143056027	143056027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaacagctggtgtcttcCcccagccctgccactcaatc	8	17	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143056027	A	A	143056027	3	1	103	1	0	0	0	0	1	0	0	0	5486	623	22	2	735	2	FAM131B	7	143056027	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	136090	143056027	16082636	534	101483											
OR2F1	26211	broad.mit.edu	37	chr7	143657496	143657496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggctgtgtgctaggttgGccatcacatcctgggtcagt	15	9	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143657496	T	T	143657496	3	4	103	1	0	0	0	0	1	0	0	0	11090	1203	42	3	435	3	OR2F1	7	143657496	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	601469	143657496	15481167	535	101484											
OR2A14	135941	broad.mit.edu	37	chr7	143826981	143826981	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcgccattgtcacgtacaTggcccccaagtcccgccatc	8	18	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143826981	A	A	143826981	3	1	103	1	0	0	0	0	1	0	0	0	11070	1464	51	5	778	5	OR2A14	7	143826981	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	169485	143826981	15311682	536	101485											
OR2A14	135941	broad.mit.edu	37	chr7	143827000	143827000	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcccccaagtcccgccaTcctgaggagcagcagaaagt	11	14	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143827000	C	C	143827000	2	2	103	1	0	0	0	0	0	0	0	1	11070	1432	50	5		5	OR2A14	7	143827000	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	19	143827000	15311663	537	101486											
ARHGEF5	7984	broad.mit.edu	37	chr7	144060384	144060384	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgggactatcaggcaggggGaagagctgccacctgaggag	18	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144060384	A	A	144060384	3	1	103	1	0	0	0	0	1	0	0	0	911	1175	41	4	624	4	ARHGEF5	7	144060384	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	233384	144060384	15078279	538	101487											
TPK1	27010	broad.mit.edu	37	chr7	144344683	144344683	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattggtgagtcatttttgcTgtcaccagcaatgttgcctt	9	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144344683	A	A	144344683	1	1	103	0	1	0	0	0	0	0	0	0	16528	1595	55	5		5	TPK1	7	144344683	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	284299	144344683	14793980	539	101488											
CNTNAP2	26047	broad.mit.edu	37	chr7	146805426	146805426	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaaaaaagccaagctggtCctcagtttaaacttaggtgt	9	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146805426	A	A	146805426	2	1	103	1	0	0	0	0	0	0	0	1	3679	842	30	3		3	CNTNAP2	7	146805426	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2460743	146805426	12333237	540	101489											
SSPO	23145	broad.mit.edu	37	chr7	149481971	149481971	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgccactgcccttcacagGggcattctgccccagggagc	11	17	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149481971	T	T	149481971	5	4	103	1	0	0	0	0	0	0	1	0	15307	1232	43	2	2833	2	SSPO	7	149481971	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	2676545	149481971	9656692	541	101490											
SSPO	23145	broad.mit.edu	37	chr7	149492318	149492318	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccctgctattctcccctGgggctggccggactggctga	13	15	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149492318	T	T	149492318	2	4	103	1	0	0	0	0	0	0	0	1	15307	1335	47	2		2	SSPO	7	149492318	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	10347	149492318	9646345	542	101491											
AGAP3	116988	broad.mit.edu	37	chr7	150839627	150839628	+	Frame_Shift_Ins	INS	-	T	T													tgactggccgcctgagctgcINStggctgtcatgactgccatg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150839628	T	T	150839627	7	5	103	1	0	1	1	0	0	0	0	0	369	796	28	0	2308	0	AGAP3	7	150839627	Frame_Shift_Ins	INS	-	TCGA-38-4632-01A-01D-1753-08	1347309	150839627	8299036	543	101492											
MLL3	58508	broad.mit.edu	37	chr7	151874238	151874238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaacatgcttttcttatctCccatgtcaagttctggatct	5	10	5	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151874238	A	A	151874238	3	1	103	1	0	0	0	0	1	0	0	0	9715	855	30	3	6523	3	MLL3	7	151874238	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1034611	151874238	7264425	544	101493											
DPP6	1804	broad.mit.edu	37	chr7	154379836	154379836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaggcttgttccttcaaCactggtggagagagacacgc	12	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154379836	A	A	154379836	1	1	103	0	1	0	0	0	0	0	0	0	4770	493	17	3		3	DPP6	7	154379836	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2505598	154379836	4758827	545	101494											
CSMD1	64478	broad.mit.edu	37	chr8	2949081	2949081	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttactggtggcatggtcAgtggaccagcggagatataa	13	7	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2949081	T	T	2949081	2	4	103	1	0	0	0	0	0	0	0	1	3978	175	7	5		5	CSMD1	8	2949081	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08		2949081	143414941	546	101495											
CSMD1	64478	broad.mit.edu	37	chr8	3224543	3224543	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagagaaacagcaaacaaGaccaacatacctgaaaatgt	8	8	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3224543	T	T	3224543	1	4	103	0	1	0	0	0	0	0	0	0	3978	957	33	3		3	CSMD1	8	3224543	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	275462	3224543	143139479	547	101496											
SPAG11A	653423	broad.mit.edu	37	chr8	7717882	7717882	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctagtgcacatctctcaCcaggaggctcgaggaccctc	9	15	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7717882	G	G	7717882	1	3	103	0	1	0	0	0	0	0	0	0	15092	522	18	4		4	SPAG11A	8	7717882	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4493339	7717882	138646140	548	101497											
PRSS55	203074	broad.mit.edu	37	chr8	10387192	10387192	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcactgcggctcactgcttAtattccgaggagctgttgta	10	11	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10387192	G	G	10387192	2	3	103	1	0	0	0	0	0	0	0	1	12740	446	16	5		5	PRSS55	8	10387192	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	2669310	10387192	135976830	549	101498											
RP1L1	94137	broad.mit.edu	37	chr8	10466378	10466378	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggctcccctcgccatcctCaccctcgtccactccaggcc	6	23	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10466378	A	A	10466378	4	1	103	1	0	0	0	0	0	1	0	0	13644	835	29	3	1976	3	RP1L1	8	10466378	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	79186	10466378	135897644	550	101499											
RP1L1	94137	broad.mit.edu	37	chr8	10469396	10469396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcaggggtgacagtggCactgctggttcccagaaggt	16	9	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10469396	A	A	10469396	3	1	103	1	0	0	0	0	1	0	0	0	13644	710	25	3	4994	3	RP1L1	8	10469396	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3018	10469396	135894626	551	101500											
SOX7	83595	broad.mit.edu	37	chr8	10584169	10584169	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagcgtcagcgccttccaCgactttcctgctcacacaag	8	16	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10584169	T	T	10584169	2	4	103	1	0	0	0	0	0	0	0	1	15070	523	19	4		4	SOX7	8	10584169	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	114773	10584169	135779853	552	101501											
XKR6	286046	broad.mit.edu	37	chr8	10756197	10756197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggatgatccagaaggcCatggcgcaccagtgaaccac	11	13	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10756197	A	A	10756197	3	1	103	1	0	0	0	0	1	0	0	0	17562	594	21	2	738	2	XKR6	8	10756197	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	172028	10756197	135607825	553	101502											
EFHA2	286097	broad.mit.edu	37	chr8	16948092	16948092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccattctcctactaataGtgtatgtacaatactttaaa	3	8	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16948092	T	T	16948092	3	4	103	1	0	0	0	0	1	0	0	0	4984	1043	36	3	917	3	EFHA2	8	16948092	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	6191895	16948092	129415930	554	101503											
MTUS1	57509	broad.mit.edu	37	chr8	17612649	17612649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaagctttctctatcaTaagtagtttctcttgcatgc	5	9	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17612649	A	A	17612649	3	1	103	1	0	0	0	0	1	0	0	0	10059	1406	49	5	3519	5	MTUS1	8	17612649	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	664557	17612649	128751373	555	101504											
SLC18A1	6570	broad.mit.edu	37	chr8	20003354	20003354	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgggttgcatacatccGggtctccatggggcagtcct	12	12	2	0	rs149404030		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20003354	T	T	20003354	2	4	103	1	0	0	0	0	0	0	0	1	14538	1116	39	1		1	SLC18A1	8	20003354	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	2390705	20003354	126360668	556	101505											
LZTS1	11178	broad.mit.edu	37	chr8	20110255	20110255	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggtactggcgccaaaccGctgaccacccaaacccatga	11	15	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20110255	A	A	20110255	1	1	103	0	1	0	0	0	0	0	0	0	9226	1102	38	4		4	LZTS1	8	20110255	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	106901	20110255	126253767	557	101506											
PIWIL2	55124	broad.mit.edu	37	chr8	22210612	22210612	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattatcagcccaagatggtGgtgtttgtagttcagaagaa	11	5	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22210612	T	T	22210612	2	4	103	1	0	0	0	0	0	0	0	1	12053	1335	47	2		2	PIWIL2	8	22210612	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	2100357	22210612	124153410	558	101507											
ADRA1A	148	broad.mit.edu	37	chr8	26627597	26627597	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgtcctccaagaagagCtggccttccgagaaggaagt	12	10	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26627597	A	A	26627597	1	1	103	0	1	0	0	0	0	0	0	0	334	812	28	3		3	ADRA1A	8	26627597	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	4416985	26627597	119736425	559	101508											
TEX15	56154	broad.mit.edu	37	chr8	30701975	30701975	+	Frame_Shift_Del	DEL	T	-	-													ggactgactcagtggtagtaTttttagtgctcagatgggaa							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30701975	-	-	30701975	7	5	103	1	0	1	0	1	0	0	0	0	15901	1493	52	0	3826	0	TEX15	8	30701975	Frame_Shift_Del	DEL	T	TCGA-38-4632-01A-01D-1753-08	4074378	30701975	115662047	560	101509											
ADAM2	2515	broad.mit.edu	37	chr8	39645695	39645695	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactcattagcttctccagTggttgcaattttattttcat	5	8	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39645695	C	C	39645695	3	2	103	1	0	0	0	0	1	0	0	0	241	1696	59	5	1537	5	ADAM2	8	39645695	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	8943720	39645695	106718327	561	101510											
ZMAT4	79698	broad.mit.edu	37	chr8	40532226	40532226	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagagctgcccttacctcTcagttcccccatatccaggg	8	15	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40532226	A	A	40532226	4	1	103	1	0	0	0	0	0	1	0	0	17820	1559	54	5	127	5	ZMAT4	8	40532226	Nonsense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	886531	40532226	105831796	562	101511											
ANK1	286	broad.mit.edu	37	chr8	41547719	41547719	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggaagccgtctcgggccaAggctcctcggcaggtgccag	16	13	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41547719	G	G	41547719	1	3	103	0	1	0	0	0	0	0	0	0	620	87	3	5		5	ANK1	8	41547719	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1015493	41547719	104816303	563	101512											
CHRNB3	1142	broad.mit.edu	37	chr8	42552778	42552778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaattaaaactacagttgCagaattatttaagcagagga	8	4	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42552778	A	A	42552778	1	1	103	0	1	0	0	0	0	0	0	0	3423	725	25	3		3	CHRNB3	8	42552778	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1005059	42552778	103811244	564	101513											
SNTG1	54212	broad.mit.edu	37	chr8	51449349	51449349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgcttctctcagtatgtgCccggcacagatttgagtcgg	12	12	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51449349	A	A	51449349	3	1	103	1	0	0	0	0	1	0	0	0	14988	739	26	3	695	3	SNTG1	8	51449349	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	8896571	51449349	94914673	565	101514											
SNTG1	54212	broad.mit.edu	37	chr8	51617105	51617105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccagtcaggaatggccaGgttagcaatgtgaagtgatg	15	6	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51617105	T	T	51617105	1	4	103	0	1	0	0	0	0	0	0	0	14988	1015	35	2		2	SNTG1	8	51617105	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	167756	51617105	94746917	566	101515											
SNTG1	54212	broad.mit.edu	37	chr8	51705212	51705212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttatgttatctgacctGtttctctttccctttcagga	5	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51705212	T	T	51705212	1	4	103	0	1	0	0	0	0	0	0	0	14988	1392	48	3		3	SNTG1	8	51705212	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	88107	51705212	94658810	567	101516											
PXDNL	137902	broad.mit.edu	37	chr8	52348476	52348476	+	Intron	SNP	G	C	C													gcataaataatttgagattaGtgagttctgtgaaatgaaaa							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52348476	C	C	52348476	1	2	103	0	1	0	0	0	0	0	0	0	12956	1044	36	4		4	PXDNL	8	52348476	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	643264	52348476	94015546	568	101517	441	2									
PXDNL	137902	broad.mit.edu	37	chr8	52348484	52348484	+	Intron	SNP	T	A	A													aatttgagattagtgagttcTgtgaaatgaaaaactgtaat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52348484	A	A	52348484	1	1	103	0	1	0	0	0	0	0	0	0	12956	1595	55	5		5	PXDNL	8	52348484	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	8	52348484	94015538	569	101518	441	2									
LYN	4067	broad.mit.edu	37	chr8	56910873	56910873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccagtcacctaccctacAtatgaaaatgggagcctatt	6	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56910873	G	G	56910873	1	3	103	0	1	0	0	0	0	0	0	0	9195	232	8	5		5	LYN	8	56910873	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	4562389	56910873	89453149	570	101519											
UBXN2B	137886	broad.mit.edu	37	chr8	59347001	59347001	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggtttcagtttagatgaTggagaattgagaccttacaa	10	4	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59347001	A	A	59347001	3	1	103	1	0	0	0	0	1	0	0	0	17041	1461	51	5	489	5	UBXN2B	8	59347001	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2436128	59347001	87017021	571	101520											
CYP7A1	1581	broad.mit.edu	37	chr8	59410881	59410881	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagggatttgtgatgaaatgGacatattttcccattagttt	9	4	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59410881	A	A	59410881	2	1	103	1	0	0	0	0	0	0	0	1	4229	1161	41	4		4	CYP7A1	8	59410881	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	63880	59410881	86953141	572	101521											
CLVS1	157807	broad.mit.edu	37	chr8	62289155	62289155	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagctctcctttctgctcTggctgcaggaactccttcac	7	16	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62289155	G	G	62289155	1	3	103	0	1	0	0	0	0	0	0	0	3603	1595	55	5		5	CLVS1	8	62289155	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2878274	62289155	84074867	573	101522											
ADHFE1	137872	broad.mit.edu	37	chr8	67361002	67361002	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaatgaaccttttctcaTatttttatttttagggtgat	6	4	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67361002	C	C	67361002	1	2	103	0	1	0	0	0	0	0	0	0	314	1421	49	5		5	ADHFE1	8	67361002	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	5071847	67361002	79003020	574	101523											
PREX2	80243	broad.mit.edu	37	chr8	68956759	68956759	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggcatctacagatggacatCggtacctttttcgtggccgg	12	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68956759	A	A	68956759	2	1	103	1	0	0	0	0	0	0	0	1	12583	875	31	3		3	PREX2	8	68956759	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	1595757	68956759	77407263	575	101524											
PREX2	80243	broad.mit.edu	37	chr8	68989739	68989739	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgggagcttacagatgtAtttcatcacgttggttctta	9	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68989739	T	T	68989739	1	4	103	0	1	0	0	0	0	0	0	0	12583	464	16	5		5	PREX2	8	68989739	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	32980	68989739	77374283	576	101525											
SLCO5A1	81796	broad.mit.edu	37	chr8	70585498	70585498	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccctgcacaccacattccTgttgccagagcatgcaggtg	9	14	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70585498	A	A	70585498	3	1	103	1	0	0	0	0	1	0	0	0	14845	1580	55	5	397	5	SLCO5A1	8	70585498	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	1595759	70585498	75778524	577	101526											
PRDM14	63978	broad.mit.edu	37	chr8	70964509	70964509	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggagtgctgcctgatgtGtgtgcggagtatgctggagg	18	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70964509	A	A	70964509	3	1	103	1	0	0	0	0	1	0	0	0	12561	1377	48	4	200	4	PRDM14	8	70964509	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	379011	70964509	75399513	578	101527											
EYA1	2138	broad.mit.edu	37	chr8	72229718	72229718	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactatttacatggaacatCaggttctactttagaagtta	6	6	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72229718	A	A	72229718	1	1	103	0	1	0	0	0	0	0	0	0	5371	841	29	3		3	EYA1	8	72229718	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1265209	72229718	74134304	579	101528											
ZFHX4	79776	broad.mit.edu	37	chr8	77764453	77764453	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccacatttgggatgcctGgcatgacaggaatggctggc	14	10	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764453	A	A	77764453	3	1	103	1	0	0	0	0	1	0	0	0	17761	1348	47	4	5330	4	ZFHX4	8	77764453	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5534735	77764453	68599569	580	101529											
ZFHX4	79776	broad.mit.edu	37	chr8	77768373	77768373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtataaagaaagcttcagaCgtgctgggcttgacggtaca	12	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77768373	A	A	77768373	3	1	103	1	0	0	0	0	1	0	0	0	17761	535	19	3	9250	3	ZFHX4	8	77768373	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3920	77768373	68595649	581	101530											
ZFHX4	79776	broad.mit.edu	37	chr8	77776592	77776592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccttcttctcctccttccCtttccttgccttcaacggtt	3	19	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77776592	A	A	77776592	3	1	103	1	0	0	0	0	1	0	0	0	17761	681	24	2	10680	2	ZFHX4	8	77776592	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	8219	77776592	68587430	582	101531											
ZFHX4	79776	broad.mit.edu	37	chr8	77776730	77776730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttagataattctttggaaGtgaaggctaagcctgcttct	9	7	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77776730	T	T	77776730	3	4	103	1	0	0	0	0	1	0	0	0	17761	1029	36	3	10818	3	ZFHX4	8	77776730	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	138	77776730	68587292	583	101532											
RALYL	138046	broad.mit.edu	37	chr8	85799925	85799926	+	Missense_Mutation	DNP	CC	AG	AG													cagatcactctacagaggagCctgctgaaggagggccagat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	85799926	AG	AG	85799925	3	1	103	1	0	0	0	0	1	0	0	0	13128	739	26	3	841	3	RALYL	8	85799925	Missense_Mutation	DNP	CC	TCGA-38-4632-01A-01D-1753-08	8023195	85799925	60564097	584	101533											
FAM82B	51115	broad.mit.edu	37	chr8	87494871	87494871	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccacgaggtatacttccaGgcttccacattgagcgcagt	9	13	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87494871	C	C	87494871	1	2	103	0	1	0	0	0	0	0	0	0	5685	1015	35	4		4	FAM82B	8	87494871	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1694946	87494871	58869151	585	101534											
CNGB3	54714	broad.mit.edu	37	chr8	87674045	87674045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttcaattgctgacgaagGtaattgttgttctcagtatc	8	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87674045	T	T	87674045	1	4	103	0	1	0	0	0	0	0	0	0	3633	1276	44	3		3	CNGB3	8	87674045	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	179174	87674045	58689977	586	101535											
CNBD1	168975	broad.mit.edu	37	chr8	88249304	88249304	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaattcaaaaactctacActtgctgagatgtacctacc	6	10	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88249304	G	G	88249304	2	3	103	1	0	0	0	0	0	0	0	1	3623	146	6	5		5	CNBD1	8	88249304	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	575259	88249304	58114718	587	101536											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885435	88885435	+	Nonsense_Mutation	SNP	A	T	T													cacccgctgccttgatttccAcagcgcagatcaatgccaaa							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885435	T	T	88885435	4	4	103	1	0	0	0	0	0	1	0	0	4305	157	6	5	426	5	DCAF4L2	8	88885435	Nonsense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	636131	88885435	57478587	588	101537	442	2									
DCAF4L2	138009	broad.mit.edu	37	chr8	88885437	88885437	+	Missense_Mutation	SNP	A	T	T													cccgctgccttgatttccacAgcgcagatcaatgccaaaga							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885437	T	T	88885437	3	4	103	1	0	0	0	0	1	0	0	0	4305	188	7	5	428	5	DCAF4L2	8	88885437	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	2	88885437	57478585	589	101538	442	2									
MMP16	4325	broad.mit.edu	37	chr8	89086777	89086777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttttgtgtgcaccacagGgtcctatacaaaatgattaa	7	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89086777	T	T	89086777	1	4	103	0	1	0	0	0	0	0	0	0	9748	1247	43	2		2	MMP16	8	89086777	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	201340	89086777	57277245	590	101539											
UQCRB	7381	broad.mit.edu	37	chr8	97243177	97243177	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccagccattacaatagaCatttatttaaagtaaaacat	3	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97243177	A	A	97243177	1	1	103	0	1	0	0	0	0	0	0	0	17144	493	17	3		3	UQCRB	8	97243177	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	8156400	97243177	49120845	591	101540											
NIPAL2	79815	broad.mit.edu	37	chr8	99264812	99264812	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccaccacagcacactcttGaagtatggccttgggtgctc	9	15	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99264812	A	A	99264812	2	1	103	1	0	0	0	0	0	0	0	1	10520	1281	45	4		4	NIPAL2	8	99264812	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	2021635	99264812	47099210	592	101541											
VPS13B	157680	broad.mit.edu	37	chr8	100245446	100245446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtttggtcacgaggcacaAtgatttctgcactagttaag	11	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100245446	G	G	100245446	1	3	103	0	1	0	0	0	0	0	0	0	17317	116	4	5		5	VPS13B	8	100245446	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	980634	100245446	46118576	593	101542											
VPS13B	157680	broad.mit.edu	37	chr8	100835929	100835929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacgccattaaatattctGgggaaaaacaaaggtaaaat	9	5	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100835929	T	T	100835929	1	4	103	0	1	0	0	0	0	0	0	0	17317	1363	47	2		2	VPS13B	8	100835929	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	590483	100835929	45528093	594	101543											
PABPC1	26986	broad.mit.edu	37	chr8	101725229	101725229	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatataagaacatgtcaAatagctattagtatgcacat	6	5	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101725229	C	C	101725229	1	2	103	0	1	0	0	0	0	0	0	0	11457	29	1	5		5	PABPC1	8	101725229	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	889300	101725229	44638793	595	101544											
GRHL2	79977	broad.mit.edu	37	chr8	102586052	102586052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccatcagcaaagtcagGgtaggggccacatttctcag	10	13	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102586052	T	T	102586052	3	4	103	1	0	0	0	0	1	0	0	0	6830	1246	43	2	913	2	GRHL2	8	102586052	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	860823	102586052	43777970	596	101545											
BAALC	79870	broad.mit.edu	37	chr8	104225421	104225421	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggagggaccagggatggctCatcttggaaaaaaaaagtct	14	6	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104225421	A	A	104225421	1	1	103	0	1	0	0	0	0	0	0	0	1284	841	29	3		3	BAALC	8	104225421	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1639369	104225421	42138601	597	101546											
RIMS2	9699	broad.mit.edu	37	chr8	104664380	104664380	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaacacaaatttgtaaaTagaaatctcttcatagtaca	4	6	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104664380	C	C	104664380	1	2	103	0	1	0	0	0	0	0	0	0	13479	1421	49	5		5	RIMS2	8	104664380	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	438959	104664380	41699642	598	101547											
RIMS2	9699	broad.mit.edu	37	chr8	104778725	104778725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctattaaaaatgggtcaGgcgtgaagcatcacattgcc	9	8	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104778725	T	T	104778725	3	4	103	1	0	0	0	0	1	0	0	0	13479	1000	35	2	668	2	RIMS2	8	104778725	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	114345	104778725	41585297	599	101548											
RIMS2	9699	broad.mit.edu	37	chr8	104897499	104897499	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgataaacttttgctcttctCattgttcttttcctttggtt	5	8	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104897499	A	A	104897499	1	1	103	0	1	0	0	0	0	0	0	0	13479	841	29	3		3	RIMS2	8	104897499	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	118774	104897499	41466523	600	101549											
RIMS2	9699	broad.mit.edu	37	chr8	104897822	104897822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaagagtaccagtcacGctaccgaagtgatccgaatt	11	9	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104897822	T	T	104897822	3	4	103	1	0	0	0	0	1	0	0	0	13479	1087	38	3	1135	3	RIMS2	8	104897822	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	323	104897822	41466200	601	101550											
RIMS2	9699	broad.mit.edu	37	chr8	104898100	104898100	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggaccaagttcttatGcacaaaggaccacaaaccat	7	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104898100	A	A	104898100	3	1	103	1	0	0	0	0	1	0	0	0	13479	1319	46	4	1413	4	RIMS2	8	104898100	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	278	104898100	41465922	602	101551											
RIMS2	9699	broad.mit.edu	37	chr8	105001674	105001674	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatgattaaatactattagAccttattattaatataatca	2	4	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105001674	T	T	105001674	1	4	103	0	1	0	0	0	0	0	0	0	13479	290	10	5		5	RIMS2	8	105001674	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	103574	105001674	41362348	603	101552											
RIMS2	9699	broad.mit.edu	37	chr8	105261776	105261776	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggtagaaatcatccgggcCcgtggccttgttgtaaaacc	12	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105261776	G	G	105261776	2	3	103	1	0	0	0	0	0	0	0	1	13479	610	22	4		4	RIMS2	8	105261776	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	260102	105261776	41102246	604	101553											
TM7SF4	81501	broad.mit.edu	37	chr8	105360857	105360858	+	Missense_Mutation	DNP	GG	AT	AT													gtctccaagaagccccggatGgatggactttatccagcatt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	105360858	AT	AT	105360857	3	1	103	1	0	0	0	0	1	0	0	0	16099	1357	47	4	79	4	TM7SF4	8	105360857	Missense_Mutation	DNP	GG	TCGA-38-4632-01A-01D-1753-08	99081	105360857	41003165	605	101554											
ZFPM2	23414	broad.mit.edu	37	chr8	106813908	106813908	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgactgaggcatggcagtaGtagctaccctcccgtcattt	11	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106813908	C	C	106813908	3	2	103	1	0	0	0	0	1	0	0	0	17784	1029	36	4	1628	4	ZFPM2	8	106813908	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1453051	106813908	39550114	606	101555											
RSPO2	340419	broad.mit.edu	37	chr8	108996156	108996156	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctacagaacttcctcttaTggagctctctgaggatattc	7	10	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108996156	C	C	108996156	1	2	103	0	1	0	0	0	0	0	0	0	13821	1479	51	5		5	RSPO2	8	108996156	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2182248	108996156	37367866	607	101556											
PKHD1L1	93035	broad.mit.edu	37	chr8	110424445	110424445	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcacacgttgggggaaaAccagaacaataaatcatgtt	11	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110424445	T	T	110424445	1	4	103	0	1	0	0	0	0	0	0	0	12067	58	2	5		5	PKHD1L1	8	110424445	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1428289	110424445	35939577	608	101557											
CSMD3	114788	broad.mit.edu	37	chr8	113301567	113301567	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caataatgtaatttccaacaCatattgtccaattttccaag	3	9	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113301567	T	T	113301567	1	4	103	0	1	0	0	0	0	0	0	0	3980	493	17	4		4	CSMD3	8	113301567	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2877122	113301567	33062455	609	101558											
CSMD3	114788	broad.mit.edu	37	chr8	113402884	113402884	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagaagaaaaacttaaaTattcttacttgaatgccagc	6	6	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113402884	A	A	113402884	1	1	103	0	1	0	0	0	0	0	0	0	3980	1421	49	5		5	CSMD3	8	113402884	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	101317	113402884	32961138	610	101559											
CSMD3	114788	broad.mit.edu	37	chr8	113649205	113649205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaccatattgaggaatgcCaggatcttcacaaggttcaa	8	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113649205	A	A	113649205	3	1	103	1	0	0	0	0	1	0	0	0	3980	594	21	2	7767	2	CSMD3	8	113649205	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	246321	113649205	32714817	611	101560											
CSMD3	114788	broad.mit.edu	37	chr8	113812445	113812445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcgtccgtttgaaggtGcagccacatttggctactca	9	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113812445	T	T	113812445	3	4	103	1	0	0	0	0	1	0	0	0	3980	1319	46	3	9441	3	CSMD3	8	113812445	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	163240	113812445	32551577	612	101561											
TRPS1	7227	broad.mit.edu	37	chr8	116426738	116426738	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtgcggattcccaggaacgGagagcttatatttactccag	11	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116426738	C	C	116426738	3	2	103	1	0	0	0	0	1	0	0	0	16718	1174	41	4	490	4	TRPS1	8	116426738	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2614293	116426738	29937284	613	101562											
SLC30A8	169026	broad.mit.edu	37	chr8	118159363	118159363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctgcttcagcaatatGcttcattttcatgattgcag	7	9	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118159363	T	T	118159363	3	4	103	1	0	0	0	0	1	0	0	0	14675	1319	46	3	248	3	SLC30A8	8	118159363	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1732625	118159363	28204659	614	101563											
MED30	90390	broad.mit.edu	37	chr8	118540906	118540906	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagctgccaaatggtgtcaCttaccacactggaacatatc	7	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118540906	G	G	118540906	3	3	103	1	0	0	0	0	1	0	0	0	9541	565	20	4	200	4	MED30	8	118540906	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	381543	118540906	27823116	615	101564											
NOV	4856	broad.mit.edu	37	chr8	120430581	120430581	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatacctagggctggtcaTagtagagggtaaatacaaac	10	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120430581	C	C	120430581	1	2	103	0	1	0	0	0	0	0	0	0	10648	1421	49	5		5	NOV	8	120430581	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1889675	120430581	25933441	616	101565											
FER1L6	654463	broad.mit.edu	37	chr8	125072897	125072897	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgaagtcctgcgtgatcCagagctacaagaacaacccg	11	11	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125072897	T	T	125072897	4	4	103	1	0	0	0	0	0	1	0	0	5872	595	21	4	3184	4	FER1L6	8	125072897	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	4642316	125072897	21291125	617	101566											
ASAP1	50807	broad.mit.edu	37	chr8	131138090	131138090	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctacgcaaactcacaaaattCaggaattataattctttgta	4	8	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131138090	A	A	131138090	1	1	103	0	1	0	0	0	0	0	0	0	1014	841	29	3		3	ASAP1	8	131138090	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	6065193	131138090	15225932	618	101567											
FAM135B	51059	broad.mit.edu	37	chr8	139165270	139165270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgtggccacattctcaCctggctctggacaccttata	8	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139165270	A	A	139165270	3	1	103	1	0	0	0	0	1	0	0	0	5495	507	18	3	2804	3	FAM135B	8	139165270	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	8027180	139165270	7198752	619	101568											
COL22A1	169044	broad.mit.edu	37	chr8	139606189	139606189	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaataatgcatgcagtgccAcctcccagccctgttccttc	7	15	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139606189	T	T	139606189	1	4	103	0	1	0	0	0	0	0	0	0	3713	174	6	5		5	COL22A1	8	139606189	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	440919	139606189	6757833	620	101569											
COL22A1	169044	broad.mit.edu	37	chr8	139635992	139635992	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccggctctccagggggacCcggctttccatctctgccct	10	17	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139635992	G	G	139635992	3	3	103	1	0	0	0	0	1	0	0	0	3713	623	22	4	1182	4	COL22A1	8	139635992	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	29803	139635992	6728030	621	101570											
COL22A1	169044	broad.mit.edu	37	chr8	139788142	139788142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagcatacacagagcagatGgttccatgcaccctctccct	8	15	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139788142	T	T	139788142	1	4	103	0	1	0	0	0	0	0	0	0	3713	1363	47	2		2	COL22A1	8	139788142	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	152150	139788142	6575880	622	101571											
COL22A1	169044	broad.mit.edu	37	chr8	139819829	139819829	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaactggaggttctgggcAgttaagaggctcccaggatt	15	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139819829	T	T	139819829	1	4	103	0	1	0	0	0	0	0	0	0	3713	203	7	5		5	COL22A1	8	139819829	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	31687	139819829	6544193	623	101572											
COL22A1	169044	broad.mit.edu	37	chr8	139838813	139838813	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcccagggataagagcccTggagaaaacatggtgggtgg	17	7	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139838813	A	A	139838813	1	1	103	0	1	0	0	0	0	0	0	0	3713	1595	55	5		5	COL22A1	8	139838813	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	18984	139838813	6525209	624	101573											
GML	2765	broad.mit.edu	37	chr8	143927822	143927822	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttttttaggcataaattctCgtgaactacttgtttataag	6	5	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143927822	T	T	143927822	3	4	103	1	0	0	0	0	1	0	0	0	6556	884	31	4	203	4	GML	8	143927822	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	4089009	143927822	2436200	625	101574											
CYP11B2	1585	broad.mit.edu	37	chr8	143993923	143993923	+	Intron	DEL	C	-	-													cctctgctgcccaggtcccgCccccgcccccaggcctgctt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143993923	-	-	143993923	6	5	103	0	1	1	0	1	0	0	0	0	4179	754	26	0		0	CYP11B2	8	143993923	Intron	DEL	C	TCGA-38-4632-01A-01D-1753-08	66101	143993923	2370099	626	101575											
CYP11B2	1585	broad.mit.edu	37	chr8	143994258	143994258	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagttctgaagcaccaagtCtgagctcaccactcgctcca	8	14	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143994258	A	A	143994258	3	1	103	1	0	0	0	0	1	0	0	0	4179	913	32	3	358	3	CYP11B2	8	143994258	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	335	143994258	2369764	627	101576											
ZC3H3	23144	broad.mit.edu	37	chr8	144522481	144522481	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccacggcagccgcagtgaGggcagccgagctgggcgtct	17	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144522481	A	A	144522481	3	1	103	1	0	0	0	0	1	0	0	0	17695	1000	35	4	309	4	ZC3H3	8	144522481	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	528223	144522481	1841541	628	101577											
SLC39A4	55630	broad.mit.edu	37	chr8	145641555	145641555	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggccaggggcttccccgaGggcctgtttccctttcaagt	12	14	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145641555	A	A	145641555	1	1	103	0	1	0	0	0	0	0	0	0	14734	1000	35	4		4	SLC39A4	8	145641555	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1119074	145641555	722467	629	101578											
NFKBIL2	4796	broad.mit.edu	37	chr8	145660445	145660445	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgaggtcctgtggggcCagcagggccccctctttccg	16	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145660445	A	A	145660445	2	1	103	1	0	0	0	0	0	0	0	1	10477	581	21	2		2	NFKBIL2	8	145660445	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	18890	145660445	703577	630	101579											
ARHGAP39	80728	broad.mit.edu	37	chr8	145763250	145763250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaacgccaggagccagCgcccactcagctcccgcact	8	18	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145763250	A	A	145763250	1	1	103	0	1	0	0	0	0	0	0	0	886	783	27	3		3	ARHGAP39	8	145763250	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	102805	145763250	600772	631	101580											
KDM4C	23081	broad.mit.edu	37	chr9	6814718	6814718	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggcacctatctatggtgcAgatattaatgggagcatata	11	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6814718	T	T	6814718	2	4	103	1	0	0	0	0	0	0	0	1	8200	175	7	5		5	KDM4C	9	6814718	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08		6814718	134398713	632	101581											
PTPRD	5789	broad.mit.edu	37	chr9	8528593	8528594	+	Missense_Mutation	DNP	GA	TT	TT													acagtaacaagaccctacctGatcgtaactgcttaatacga							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	8528594	TT	TT	8528593	3	4	103	1	0	0	0	0	1	0	0	0	12907	1294	45	3	5395	3	PTPRD	9	8528593	Missense_Mutation	DNP	GA	TCGA-38-4632-01A-01D-1753-08	1713875	8528593	132684838	633	101582											
FAM154A	158297	broad.mit.edu	37	chr9	18941835	18941835	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttgtgaggcccaaaatctCtcctgtaaggaagcaagtgc	10	10	1	1	rs149549686		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18941835	A	A	18941835	3	1	103	1	0	0	0	0	1	0	0	0	5509	913	32	3	1211	3	FAM154A	9	18941835	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	10413242	18941835	122271596	634	101583											
MLLT3	4300	broad.mit.edu	37	chr9	20354792	20354792	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggagccctcctagtaacaGactagaaacctaccttgtca	7	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20354792	C	C	20354792	1	2	103	0	1	0	0	0	0	0	0	0	9721	957	33	4		4	MLLT3	9	20354792	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1412957	20354792	120858639	635	101584											
IFNA17	3451	broad.mit.edu	37	chr9	21227612	21227612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaccagttttcaatccttCctccttaatattttttgcaa	3	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21227612	A	A	21227612	3	1	103	1	0	0	0	0	1	0	0	0	7606	854	30	3	12	3	IFNA17	9	21227612	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	872820	21227612	119985819	636	101585											
CDKN2A	1029	broad.mit.edu	37	chr9	21968267	21968267	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcagaaagaaaacaggCgttagaaacctgaggtcaaa	13	6	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21968267	T	T	21968267	1	4	103	0	1	0	0	0	0	0	0	0	3191	783	27	4		4	CDKN2A	9	21968267	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	740655	21968267	119245164	637	101586											
APTX	54840	broad.mit.edu	37	chr9	32973624	32973624	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctcggacagttactctacCagcctcttgtaccatctcga	6	14	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32973624	G	G	32973624	3	3	103	1	0	0	0	0	1	0	0	0	822	594	21	4	131	4	APTX	9	32973624	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	11005357	32973624	108239807	638	101587											
DCAF12	25853	broad.mit.edu	37	chr9	34126444	34126444	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccatagtgggcagcgccgCcgcggccccgcagccacatg	15	17	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34126444	T	T	34126444	1	4	103	0	1	0	0	0	0	0	0	0	4296	754	26	4		4	DCAF12	9	34126444	5'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	1152820	34126444	107086987	639	101588											
FANCG	2189	broad.mit.edu	37	chr9	35078407	35078407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcatcctccatctcccCacacactctggctttcctct	2	21	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35078407	A	A	35078407	1	1	103	0	1	0	0	0	0	0	0	0	5725	609	21	2		2	FANCG	9	35078407	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	951963	35078407	106135024	640	101589											
TPM2	7169	broad.mit.edu	37	chr9	35689925	35689925	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggacggagcgggactggGacgtcccggccacgcgggcg	21	12	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35689925	T	T	35689925	1	4	103	0	1	0	0	0	0	0	0	0	16530	1189	41	3		3	TPM2	9	35689925	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	611518	35689925	105523506	641	101590											
FAM75A6	389730	broad.mit.edu	37	chr9	43625036	43625036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcgcatggcaaagtgaCattttcttgtccagcatttg	11	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43625036	A	A	43625036	3	1	103	1	0	0	0	0	1	0	0	0	5674	478	17	3	384	3	FAM75A6	9	43625036	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	7935111	43625036	97588395	642	101591											
FLJ44082	389762	broad.mit.edu	37	chr9	84564680	84564680	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctttgtcggccagaattatCctgcaatgattagacagatc	8	9	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84564680	A	A	84564680	1	1	103	0	1	0	0	0	0	0	0	0	5988	870	30	3		3	FLJ44082	9	84564680	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	40939644	84564680	56648751	643	101592											
FLJ46321	389763	broad.mit.edu	37	chr9	84607070	84607070	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctagtacccaaccactacCcttgcctcaaaccctgcccc	4	21	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84607070	G	G	84607070	3	3	103	1	0	0	0	0	1	0	0	0	5990	623	22	4	1699	4	FLJ46321	9	84607070	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	42390	84607070	56606361	644	101593											
S1PR3	1903	broad.mit.edu	37	chr9	91616365	91616365	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattggcaacctggctctcTgcgacctgctggccggcatc	11	15	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91616365	C	C	91616365	3	2	103	1	0	0	0	0	1	0	0	0	13906	1580	55	5	252	5	S1PR3	9	91616365	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	7009295	91616365	49597066	645	101594											
TMEFF1	8577	broad.mit.edu	37	chr9	103261150	103261150	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtttgaaatgtgcatgccaAtttcaggtgaggaaacccag	12	7	1	2	rs150250818		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103261150	G	G	103261150	2	3	103	1	0	0	0	0	0	0	0	1	16136	98	4	5		5	TMEFF1	9	103261150	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	11644785	103261150	37952281	646	101595											
BAAT	570	broad.mit.edu	37	chr9	104124972	104124972	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcagcgtgtgctttgctgTtgatagtcttatcaccttct	9	9	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104124972	C	C	104124972	3	2	103	1	0	0	0	0	1	0	0	0	1285	1725	60	5	265	5	BAAT	9	104124972	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	863822	104124972	37088459	647	101596											
SVEP1	79987	broad.mit.edu	37	chr9	113168525	113168525	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggacccacaggacaaggGctcacagactggataaggct	14	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113168525	A	A	113168525	3	1	103	1	0	0	0	0	1	0	0	0	15538	1203	42	4	1404	4	SVEP1	9	113168525	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	9043553	113168525	28044906	648	101597											
SVEP1	79987	broad.mit.edu	37	chr9	113261339	113261339	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctttacacacagctgcctGaactccgacattccattttc	4	15	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113261339	A	A	113261339	4	1	103	1	0	0	0	0	0	1	0	0	15538	1299	45	4	9220	4	SVEP1	9	113261339	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	92814	113261339	27952092	649	101598											
AKNA	80709	broad.mit.edu	37	chr9	117138647	117138647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcccaggcctctccaccCcagccagcctctactccagg	6	21	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117138647	A	A	117138647	1	1	103	0	1	0	0	0	0	0	0	0	463	638	22	2		2	AKNA	9	117138647	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3877308	117138647	24074784	650	101599											
TLR4	7099	broad.mit.edu	37	chr9	120471072	120471072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgtcatttcattattGgactggaaagcttggtttgt	10	6	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120471072	T	T	120471072	1	4	103	0	1	0	0	0	0	0	0	0	16076	1363	47	2		2	TLR4	9	120471072	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	3332425	120471072	20742359	651	101600											
TLR4	7099	broad.mit.edu	37	chr9	120475965	120475965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacagcatttaactcactctCcagtcttcaggtactaaata	4	11	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120475965	A	A	120475965	3	1	103	1	0	0	0	0	1	0	0	0	16076	855	30	3	1569	3	TLR4	9	120475965	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	4893	120475965	20737466	652	101601											
RC3H2	54542	broad.mit.edu	37	chr9	125622059	125622059	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttagaagcacagatccttGgggaaggaaaaaaacttatg	10	5	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125622059	A	A	125622059	1	1	103	0	1	0	0	0	0	0	0	0	13275	1363	47	4		4	RC3H2	9	125622059	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	5146094	125622059	15591372	653	101602											
PSMB7	5695	broad.mit.edu	37	chr9	127177085	127177085	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctgattcctgttgccggTtcagtcactgctgctcttag	10	11	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127177085	A	A	127177085	1	1	103	0	1	0	0	0	0	0	0	0	12788	1740	60	5		5	PSMB7	9	127177085	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1555026	127177085	14036346	654	101603											
PBX3	5090	broad.mit.edu	37	chr9	128678003	128678003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaggaggaggaccctcccGatccccagctaatgagactg	11	15	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128678003	T	T	128678003	3	4	103	1	0	0	0	0	1	0	0	0	11588	1058	37	3	323	3	PBX3	9	128678003	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1500918	128678003	12535428	655	101604											
LMX1B	4010	broad.mit.edu	37	chr9	129376824	129376824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggcatcaagatggaggaGcacgccctgcgccccgggcc	15	15	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129376824	T	T	129376824	3	4	103	1	0	0	0	0	1	0	0	0	8936	962	34	3	98	3	LMX1B	9	129376824	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	698821	129376824	11836607	656	101605											
DOLPP1	57171	broad.mit.edu	37	chr9	131848960	131848960	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcatgccctgatgtgccCctggctctctgatgtctgtc	10	14	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131848960	T	T	131848960	1	4	103	0	1	0	0	0	0	0	0	0	4744	638	22	4		4	DOLPP1	9	131848960	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2472136	131848960	9364471	657	101606											
PRRX2	51450	broad.mit.edu	37	chr9	132484487	132484488	+	Intron	DNP	CG	TT	TT													atgtgacctgtgtctcatgtCgcccccagcacagtgccacc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	132484488	TT	TT	132484487	1	4	103	0	1	0	0	0	0	0	0	0	12719	899	31	4		4	PRRX2	9	132484487	Intron	DNP	CG	TCGA-38-4632-01A-01D-1753-08	635527	132484487	8728944	658	101607											
PRDM12	59335	broad.mit.edu	37	chr9	133543823	133543823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgacactggcctcgctGgctctgcgcaggccatgggg	16	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133543823	T	T	133543823	1	4	103	0	1	0	0	0	0	0	0	0	12559	1363	47	2		2	PRDM12	9	133543823	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1059336	133543823	7669608	659	101608											
LAMC3	10319	broad.mit.edu	37	chr9	133901990	133901990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaggtcagggaggagcGgggcttcggaggttgggacg	22	7	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133901990	A	A	133901990	1	1	103	0	1	0	0	0	0	0	0	0	8688	1131	39	4		4	LAMC3	9	133901990	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	358167	133901990	7311441	660	101609											
ADAMTS13	11093	broad.mit.edu	37	chr9	136321309	136321309	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggtggtgaccctccgcgtCcttgagagttctctcaactg	12	12	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136321309	T	T	136321309	2	4	103	1	0	0	0	0	0	0	0	1	258	842	30	4		4	ADAMTS13	9	136321309	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2419319	136321309	4892122	661	101610											
GPSM1	26086	broad.mit.edu	37	chr9	139250962	139250962	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccacggcgagccccaggAgccgggggacgacttcttca	15	14	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139250962	G	G	139250962	3	3	103	1	0	0	0	0	1	0	0	0	6800	304	11	5	1998	5	GPSM1	9	139250962	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	2929653	139250962	1962469	662	101611											
C9orf173	441476	broad.mit.edu	37	chr9	140145688	140145688	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacagaggggcctaccagtGaggtcacagagctccgtggt	14	11	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140145688	A	A	140145688	1	1	103	0	1	0	0	0	0	0	0	0	2498	1305	45	4		4	C9orf173	9	140145688	5'Flank	SNP	G	TCGA-38-4632-01A-01D-1753-08	894726	140145688	1067743	663	101612											
EHMT1	79813	broad.mit.edu	37	chr9	140611370	140611370	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcggcagcaacggatacatCttaaataagccggccctaca	8	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140611370	G	G	140611370	3	3	103	1	0	0	0	0	1	0	0	0	5023	903	32	4	388	4	EHMT1	9	140611370	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	465682	140611370	602061	664	101613											
DIP2C	22982	broad.mit.edu	37	chr10	408656	408656	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagttaataaagaggaaatCatgttataagaggaagtata	9	1	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	408656	A	A	408656	1	1	103	0	1	0	0	0	0	0	0	0	4569	841	29	3		3	DIP2C	10	408656	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08		408656	135126091	665	101614											
PFKP	5214	broad.mit.edu	37	chr10	3124618	3124618	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccgtggtgcgcatgggtAtctacgtgggggccaaggtg	19	8	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3124618	G	G	3124618	3	3	103	1	0	0	0	0	1	0	0	0	11861	449	16	5	157	5	PFKP	10	3124618	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	2715962	3124618	132410129	666	101615											
IL2RA	3559	broad.mit.edu	37	chr10	6104076	6104076	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcagccaggcaccatgatGaacgtgagcagtccccacat	11	13	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6104076	A	A	6104076	2	1	103	1	0	0	0	0	0	0	0	1	7756	1281	45	4		4	IL2RA	10	6104076	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	2979458	6104076	129430671	667	101616											
ITIH2	3698	broad.mit.edu	37	chr10	7763016	7763016	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctctggagaagagaaaagCaggctggtgttgaggacact	15	6	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7763016	T	T	7763016	1	4	103	0	1	0	0	0	0	0	0	0	7974	725	25	4		4	ITIH2	10	7763016	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1658940	7763016	127771731	668	101617											
MCM10	55388	broad.mit.edu	37	chr10	13239666	13239666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaaaggccaggttcttaCaaaaacaaacccaaacagca	7	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13239666	A	A	13239666	3	1	103	1	0	0	0	0	1	0	0	0	9478	478	17	3	2075	3	MCM10	10	13239666	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	5476650	13239666	122295081	669	101618											
ITGA8	8516	broad.mit.edu	37	chr10	15649716	15649716	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggcactggtgggatttcTgcctttttatcacaagaggg	12	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15649716	A	A	15649716	3	1	103	1	0	0	0	0	1	0	0	0	7952	1580	55	5	1523	5	ITGA8	10	15649716	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2410050	15649716	119885031	670	101619											
SLC39A12	221074	broad.mit.edu	37	chr10	18280241	18280241	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatgacaaggtatatttTtaagttttatttgtcttgtg	7	4	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18280241	A	A	18280241	1	1	103	0	1	0	0	0	0	0	0	0	14729	1856	64	5		5	SLC39A12	10	18280241	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2630525	18280241	117254506	671	101620											
CACNB2	783	broad.mit.edu	37	chr10	18789826	18789850	+	Frame_Shift_Del	DEL	ACATGAGGCTGCAGCATGAACAGAG	-	-													aagcccagtcaaactagaaaAcatgaggctgcagcatgaac							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18789850	-	-	18789826	7	5	103	1	0	1	0	1	0	0	0	0	2579	43	2	0	780	0	CACNB2	10	18789826	Frame_Shift_Del	DEL	ACATGAGGCTGCAGCATGAACAGAG	TCGA-38-4632-01A-01D-1753-08	509585	18789826	116744921	672	101621											
ARL5B	221079	broad.mit.edu	37	chr10	18964192	18964192	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttattctgtgacatgaacAttttttcctagtacctttgg	6	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18964192	G	G	18964192	1	3	103	0	1	0	0	0	0	0	0	0	944	232	8	5		5	ARL5B	10	18964192	3'UTR	SNP	A	TCGA-38-4632-01A-01D-1753-08	174366	18964192	116570555	673	101622											
ARMC3	219681	broad.mit.edu	37	chr10	23257482	23257482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtttctcaggctggagtGctgtggcgtgatcacagctc	13	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23257482	T	T	23257482	1	4	103	0	1	0	0	0	0	0	0	0	956	1334	46	3		3	ARMC3	10	23257482	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	4293290	23257482	112277265	674	101623											
GPR158	57512	broad.mit.edu	37	chr10	25886839	25886839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacgcattacggagatcCcagagacagtcagccggcag	13	11	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25886839	A	A	25886839	3	1	103	1	0	0	0	0	1	0	0	0	6728	623	22	2	2326	2	GPR158	10	25886839	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2629357	25886839	109647908	675	101624											
MYO3A	53904	broad.mit.edu	37	chr10	26454991	26454991	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaccagcccttttttccattCcaaggtactaccttctctgc	4	15	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26454991	G	G	26454991	1	3	103	0	1	0	0	0	0	0	0	0	10170	870	30	4		4	MYO3A	10	26454991	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	568152	26454991	109079756	676	101625											
GAD2	2572	broad.mit.edu	37	chr10	26558193	26558193	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggttttattttaaaaagagGatccaagcctcaatctccca	6	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26558193	A	A	26558193	1	1	103	0	1	0	0	0	0	0	0	0	6240	1189	41	4		4	GAD2	10	26558193	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	103202	26558193	108976554	677	101626											
YME1L1	10730	broad.mit.edu	37	chr10	27412646	27412646	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaaaagaaaatgaaaaCgagaatgattcaaagtattt	6	4	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27412646	T	T	27412646	1	4	103	0	1	0	0	0	0	0	0	0	17614	551	19	4		4	YME1L1	10	27412646	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	854453	27412646	108122101	678	101627											
ZEB1	6935	broad.mit.edu	37	chr10	31809572	31809572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaataatcaagccaatcttGcatccaaagaacaagaaaca	5	9	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31809572	T	T	31809572	3	4	103	1	0	0	0	0	1	0	0	0	17749	1319	46	3	1349	3	ZEB1	10	31809572	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4396926	31809572	103725175	679	101628											
ANKRD30A	91074	broad.mit.edu	37	chr10	37486390	37486390	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagccttggaattgaagaatGaacaaacattgagagcaggt	11	5	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37486390	C	C	37486390	3	2	103	1	0	0	0	0	1	0	0	0	658	1291	45	4	2644	4	ANKRD30A	10	37486390	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	5676818	37486390	98048357	680	101629											
ZNF33A	7581	broad.mit.edu	37	chr10	38305840	38305840	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagtatcatttaaagatgtGactgtgggcttcacccagga	10	8	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38305840	T	T	38305840	2	4	103	1	0	0	0	0	0	0	0	1	17980	1277	45	3		3	ZNF33A	10	38305840	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	819450	38305840	97228907	681	101630											
BMS1	9790	broad.mit.edu	37	chr10	43292409	43292409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctgatgaagaaagcaGctctccccactttcgattct	7	12	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43292409	T	T	43292409	3	4	103	1	0	0	0	0	1	0	0	0	1478	971	34	3	1751	3	BMS1	10	43292409	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4986569	43292409	92242338	682	101631											
FAM21C	253725	broad.mit.edu	37	chr10	46281164	46281164	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagacccacagttatttaGacttgtctgcattaaggagg	10	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46281164	T	T	46281164	1	4	103	0	1	0	0	0	0	0	0	0	5589	957	33	3		3	FAM21C	10	46281164	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2988755	46281164	89253583	683	101632											
RBP3	5949	broad.mit.edu	37	chr10	48390038	48390038	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagggacctggacacgggCaccgtgaagaagaagtcaga	14	11	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48390038	A	A	48390038	2	1	103	1	0	0	0	0	0	0	0	1	13265	697	25	3		3	RBP3	10	48390038	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2108874	48390038	87144709	684	101633											
GDF10	2662	broad.mit.edu	37	chr10	48429174	48429174	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgtagggcgcataggggcTgggccggggcacccccgggt	20	11	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48429174	A	A	48429174	3	1	103	1	0	0	0	0	1	0	0	0	6375	1580	55	5	732	5	GDF10	10	48429174	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	39136	48429174	87105573	685	101634											
C10orf71	118461	broad.mit.edu	37	chr10	50530859	50530859	+	Frame_Shift_Del	DEL	C	-	-													ccagttaccgtcacagggcaCggaacattcgggctgggcgg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50530859	-	-	50530859	7	5	103	1	0	1	0	1	0	0	0	0	1625	536	19	0	271	0	C10orf71	10	50530859	Frame_Shift_Del	DEL	C	TCGA-38-4632-01A-01D-1753-08	2101685	50530859	85003888	686	101635											
CTNNA3	29119	broad.mit.edu	37	chr10	69299427	69299427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatactttcagagcttcaCctgaaaaatacaaccccata	4	12	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69299427	A	A	69299427	3	1	103	1	0	0	0	0	1	0	0	0	4048	521	18	3	2454	3	CTNNA3	10	69299427	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	18768568	69299427	66235320	687	101636											
HKDC1	80201	broad.mit.edu	37	chr10	71021127	71021127	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggttgggccaatttgagGtttaaaaataaaaacagaaa	11	3	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71021127	A	A	71021127	1	1	103	0	1	0	0	0	0	0	0	0	7260	1276	44	4		4	HKDC1	10	71021127	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1721700	71021127	64513620	688	101637											
MYOF	26509	broad.mit.edu	37	chr10	95123702	95123702	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgagagtttctctccGgagcaggccactcaccgcat	11	13	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95123702	C	C	95123702	1	2	103	0	1	0	0	0	0	0	0	0	10183	1131	39	4		4	MYOF	10	95123702	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	24102575	95123702	40411045	689	101638											
PDE6C	5146	broad.mit.edu	37	chr10	95380833	95380833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctattcctcctggggGtgtaagccacgtggaacaga	11	13	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95380833	T	T	95380833	1	4	103	0	1	0	0	0	0	0	0	0	11741	1276	44	3		3	PDE6C	10	95380833	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	257131	95380833	40153914	690	101639											
TLL2	7093	broad.mit.edu	37	chr10	98156848	98156848	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacccctgtggctctggcCtggagtgtctgggctgggag	16	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98156848	A	A	98156848	1	1	103	0	1	0	0	0	0	0	0	0	16069	696	24	2		2	TLL2	10	98156848	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2776015	98156848	37377899	691	101640											
ZFYVE27	118813	broad.mit.edu	37	chr10	99504558	99504558	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccttcaggaggtttgccGggcacggctgcctgattccg	13	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99504558	A	A	99504558	3	1	103	1	0	0	0	0	1	0	0	0	17795	1116	39	4	351	4	ZFYVE27	10	99504558	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1347710	99504558	36030189	692	101641											
HPSE2	60495	broad.mit.edu	37	chr10	100503814	100503814	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtttgtctagagacctggCtgggaagaagcagagaaagg	15	5	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100503814	A	A	100503814	5	1	103	1	0	0	0	0	0	0	1	0	7412	811	28	3	1242	3	HPSE2	10	100503814	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	999256	100503814	35030933	693	101642											
SUFU	51684	broad.mit.edu	37	chr10	104377022	104377022	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttccaagcccagctcctcActgtctccatgttcccatct	5	17	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104377022	T	T	104377022	1	4	103	0	1	0	0	0	0	0	0	0	15486	174	6	5		5	SUFU	10	104377022	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	3873208	104377022	31157725	694	101643											
NEURL	9148	broad.mit.edu	37	chr10	105331369	105331369	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtacgcctgccccgacctgGtgtcccagagtggcttctgg	13	14	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105331369	C	C	105331369	3	2	103	1	0	0	0	0	1	0	0	0	10440	1261	44	4	449	4	NEURL	10	105331369	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	954347	105331369	30203378	695	101644											
SORCS3	22986	broad.mit.edu	37	chr10	106974110	106974110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttttgctcttgctctcttAcattccctttataacacaca	3	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106974110	T	T	106974110	1	4	103	0	1	0	0	0	0	0	0	0	15046	406	14	5		5	SORCS3	10	106974110	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1642741	106974110	28560637	696	101645											
SORCS1	114815	broad.mit.edu	37	chr10	108337086	108337086	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaggaaagaaaaaaaaCacaaagttagtggtcatgaa	8	4	1	2	rs144559779	by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108337086	A	A	108337086	1	1	103	0	1	0	0	0	0	0	0	0	15044	493	17	3		3	SORCS1	10	108337086	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	1362976	108337086	27197661	697	101646											
SORCS1	114815	broad.mit.edu	37	chr10	108466382	108466382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtagtaatgtggccgccctCctgatgtcagctggatcata	11	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108466382	A	A	108466382	3	1	103	1	0	0	0	0	1	0	0	0	15044	855	30	3	2662	3	SORCS1	10	108466382	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	129296	108466382	27068365	698	101647											
SORCS1	114815	broad.mit.edu	37	chr10	108489872	108489872	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatttgaccccatcacagaCctaaaaaatggagaaacatg	6	9	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108489872	T	T	108489872	4	4	103	1	0	0	0	0	0	1	0	0	15044	521	18	4	2864	4	SORCS1	10	108489872	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	23490	108489872	27044875	699	101648											
SORCS1	114815	broad.mit.edu	37	chr10	108536260	108536260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttccccggagaaccatgcTtcattgtctcaaacaaggta	7	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108536260	A	A	108536260	1	1	103	0	1	0	0	0	0	0	0	0	15044	1624	56	5		5	SORCS1	10	108536260	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	46388	108536260	26998487	700	101649											
XPNPEP1	7511	broad.mit.edu	37	chr10	111633124	111633124	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttttttacctccaccttaCcttctcgtaggctgtagggg	9	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111633124	T	T	111633124	5	4	103	1	0	0	0	0	0	0	1	0	17569	521	18	4	571	4	XPNPEP1	10	111633124	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	3096864	111633124	23901623	701	101650											
TIAL1	7073	broad.mit.edu	37	chr10	121342174	121342174	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagctgggaatatacaaggtGagactgcataagcttatgaa	11	5	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121342174	A	A	121342174	1	1	103	0	1	0	0	0	0	0	0	0	16012	1305	45	4		4	TIAL1	10	121342174	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	9709050	121342174	14192573	702	101651											
FGFR2	2263	broad.mit.edu	37	chr10	123279674	123279674	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggaggatgggccggtgaGgcgatcgctctggtggagag	20	7	1	2	rs77543610		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123279674	A	A	123279674	3	1	103	1	0	0	0	0	1	0	0	0	5923	1000	35	4	2011	4	FGFR2	10	123279674	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1937500	123279674	12255073	703	101652											
DMBT1	1755	broad.mit.edu	37	chr10	124385351	124385351	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggctctgagaagtcctgTactaaggaaaaggatttaac	10	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124385351	A	A	124385351	1	1	103	0	1	0	0	0	0	0	0	0	4617	1653	57	5		5	DMBT1	10	124385351	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1105677	124385351	11149396	704	101653											
DOCK1	1793	broad.mit.edu	37	chr10	129172391	129172391	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttttgtaaaactcgttgtGcgcttaatggaaaggctttt	9	6	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129172391	A	A	129172391	2	1	103	1	0	0	0	0	0	0	0	1	4724	1306	46	4		4	DOCK1	10	129172391	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	4787040	129172391	6362356	705	101654											
PTPRE	5791	broad.mit.edu	37	chr10	129845794	129845794	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacttgccccaaccagctcAgaggaggaaatgagccttct	10	12	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129845794	T	T	129845794	1	4	103	0	1	0	0	0	0	0	0	0	12908	203	7	5		5	PTPRE	10	129845794	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	673403	129845794	5688953	706	101655											
C10orf91	170393	broad.mit.edu	37	chr10	134259298	134259298	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggacaggtgggtcctggtggTaggtcagctgctgagtttcc	17	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134259298	A	A	134259298	1	1	103	0	1	0	0	0	0	0	0	0	1635	1653	57	5		5	C10orf91	10	134259298	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	4413504	134259298	1275449	707	101656											
KNDC1	85442	broad.mit.edu	37	chr10	135020313	135020313	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggcacaggtccgagacCctggctgcaggcagcccggc	16	14	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135020313	T	T	135020313	1	4	103	0	1	0	0	0	0	0	0	0	8497	638	22	4		4	KNDC1	10	135020313	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	761015	135020313	514434	708	101657											
EPS8L2	64787	broad.mit.edu	37	chr11	722597	722597	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcatggggggccagcgctGcatgggggccagcaaggggg	20	10	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	722597	A	A	722597	1	1	103	0	1	0	0	0	0	0	0	0	5238	1334	46	4		4	EPS8L2	11	722597	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08		722597	134283919	709	101658											
OR52E2	119678	broad.mit.edu	37	chr11	5080000	5080000	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatatgacaggattgagcatTggtggcaccacaacatagag	11	7	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5080000	A	A	5080000	2	1	103	1	0	0	0	0	0	0	0	1	11209	1799	63	5		5	OR52E2	11	5080000	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	4357403	5080000	129926516	710	101659											
HBG2	3048	broad.mit.edu	37	chr11	5275539	5275539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccttgaagttctcaggatCcacatgcagcttgtcacagt	8	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5275539	A	A	5275539	3	1	103	1	0	0	0	0	1	0	0	0	7049	855	30	3	153	3	HBG2	11	5275539	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	195539	5275539	129730977	711	101660											
STK33	65975	broad.mit.edu	37	chr11	8474494	8474494	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtcacctgttttcctgtCctagagctcactcattctga	6	13	4	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8474494	A	A	8474494	1	1	103	0	1	0	0	0	0	0	0	0	15418	870	30	3		3	STK33	11	8474494	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3198955	8474494	126532022	712	101661											
SAAL1	113174	broad.mit.edu	37	chr11	18113861	18113861	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatattacctaaaattcccAcacagatttcctgccaaatc	2	14	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18113861	G	G	18113861	3	3	103	1	0	0	0	0	1	0	0	0	13912	159	6	5	1116	5	SAAL1	11	18113861	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	9639367	18113861	116892655	713	101662											
NELL1	4745	broad.mit.edu	37	chr11	20949926	20949926	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttccttcctcagagtGgtgccgtggaatgccgaagg	13	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20949926	A	A	20949926	3	1	103	1	0	0	0	0	1	0	0	0	10428	1348	47	4	932	4	NELL1	11	20949926	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2836065	20949926	114056590	714	101663											
FNBP4	23360	broad.mit.edu	37	chr11	47772419	47772419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcctgtgctcagagtaaCgcttattagatctgaaaata	7	9	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47772419	A	A	47772419	1	1	103	0	1	0	0	0	0	0	0	0	6025	551	19	3		3	FNBP4	11	47772419	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	26822493	47772419	87234097	715	101664											
OR4A15	81328	broad.mit.edu	37	chr11	55136012	55136012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttattgaaacttgcttgcaCcaatacctatgtcactgggc	7	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55136012	A	A	55136012	3	1	103	1	0	0	0	0	1	0	0	0	11134	507	18	3	655	3	OR4A15	11	55136012	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	7363593	55136012	79870504	716	101665											
OR4C16	219428	broad.mit.edu	37	chr11	55339546	55339546	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacagcataaattaattccTtttttttttgcaggtagacc	6	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55339546	C	C	55339546	1	2	103	0	1	0	0	0	0	0	0	0	11143	1624	56	5		5	OR4C16	11	55339546	5'Flank	SNP	T	TCGA-38-4632-01A-01D-1753-08	203534	55339546	79666970	717	101666											
OR8K5	219453	broad.mit.edu	37	chr11	55927530	55927530	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taataggaaatagtatttcgAtccacaacaaaatttgccag	6	7	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55927530	T	T	55927530	3	4	103	1	0	0	0	0	1	0	0	0	11339	330	12	5	662	5	OR8K5	11	55927530	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	587984	55927530	79078986	718	101667											
OR5J2	282775	broad.mit.edu	37	chr11	55944383	55944383	+	Frame_Shift_Del	DEL	G	-	-													aacaatttctttctctgcttGcatggtacagcatttgtgtt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55944383	-	-	55944383	7	5	103	1	0	1	0	1	0	0	0	0	11259	1319	46	0	292	0	OR5J2	11	55944383	Frame_Shift_Del	DEL	G	TCGA-38-4632-01A-01D-1753-08	16853	55944383	79062133	719	101668											
OR8K1	390157	broad.mit.edu	37	chr11	56114132	56114132	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattagaattaataattttGatcttctcaggctgtaattt	6	4	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56114132	T	T	56114132	3	4	103	1	0	0	0	0	1	0	0	0	11337	1281	45	3	620	3	OR8K1	11	56114132	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	169749	56114132	78892384	720	101669											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57070017	57070017	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtgctggcccctgatcGctccacctggctgctgaaga	12	14	1	3	rs138321958		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57070017	A	A	57070017	2	1	103	1	0	0	0	0	0	0	0	1	16443	1078	38	4		4	TNKS1BP1	11	57070017	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	955885	57070017	77936499	721	101670											
OR1S2	219958	broad.mit.edu	37	chr11	57970677	57970677	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgtagatgtccagggcatCaaagggaagaaatttttcta	10	5	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57970677	G	G	57970677	1	3	103	0	1	0	0	0	0	0	0	0	11067	840	29	4		4	OR1S2	11	57970677	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	900660	57970677	77035839	722	101671											
DTX4	23220	broad.mit.edu	37	chr11	58949516	58949516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaccttgcctaaggctcaGtcctggccagtcagccctgg	13	14	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58949516	T	T	58949516	3	4	103	1	0	0	0	0	1	0	0	0	4837	1020	36	3	522	3	DTX4	11	58949516	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	978839	58949516	76057000	723	101672											
MPEG1	219972	broad.mit.edu	37	chr11	58978321	58978321	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgccgtagatggccaagGtgataacaacagccagaatg	14	8	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58978321	A	A	58978321	3	1	103	1	0	0	0	0	1	0	0	0	9817	1261	44	4	136	4	MPEG1	11	58978321	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	28805	58978321	76028195	724	101673											
MPEG1	219972	broad.mit.edu	37	chr11	58980169	58980169	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccataactcgtcccatgtccAcattccgcagattgtcccag	6	16	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58980169	G	G	58980169	3	3	103	1	0	0	0	0	1	0	0	0	9817	159	6	5	1984	5	MPEG1	11	58980169	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	1848	58980169	76026347	725	101674											
OR4D9	390199	broad.mit.edu	37	chr11	59282373	59282373	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagatgaacctgataaagGatctgtgattcaatggatca	10	6	3	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59282373	T	T	59282373	1	4	103	0	1	0	0	0	0	0	0	0	11153	1189	41	3		3	OR4D9	11	59282373	5'Flank	SNP	G	TCGA-38-4632-01A-01D-1753-08	302204	59282373	75724143	726	101675											
MS4A1	931	broad.mit.edu	37	chr11	60230467	60230467	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccactgctgcctctgttctCtccccaggctgtccagatta	7	16	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60230467	A	A	60230467	1	1	103	0	1	0	0	0	0	0	0	0	9948	928	32	3		3	MS4A1	11	60230467	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	948094	60230467	74776049	727	101676											
CD6	923	broad.mit.edu	37	chr11	60785469	60785469	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttggagctggccggcacCcagccagccttttcaggtaa	11	13	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60785469	A	A	60785469	2	1	103	1	0	0	0	0	0	0	0	1	3058	610	22	2		2	CD6	11	60785469	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	555002	60785469	74221047	728	101677											
DAGLA	747	broad.mit.edu	37	chr11	61511175	61511175	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaccactggccaccatggaGagcctctcggacactgagtc	11	15	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61511175	T	T	61511175	3	4	103	1	0	0	0	0	1	0	0	0	4259	933	33	3	2417	3	DAGLA	11	61511175	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	725706	61511175	73495341	729	101678											
CCDC88B	283234	broad.mit.edu	37	chr11	64108862	64108862	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggtagaggagggagatccTgcaccagctccccttcctgt	13	13	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64108862	C	C	64108862	1	2	103	0	1	0	0	0	0	0	0	0	2892	1595	55	5		5	CCDC88B	11	64108862	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2597687	64108862	70897654	730	101679											
SF1	7536	broad.mit.edu	37	chr11	64536578	64536578	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtaatgctgcgggtctctGagctctgccagggtcttaag	14	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64536578	A	A	64536578	3	1	103	1	0	0	0	0	1	0	0	0	14258	1294	45	4	1278	4	SF1	11	64536578	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	427716	64536578	70469938	731	101680											
SYVN1	84447	broad.mit.edu	37	chr11	64899785	64899785	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgataggcgtggctgacGaagaggaagtccaggatgcc	16	8	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64899785	A	A	64899785	2	1	103	1	0	0	0	0	0	0	0	1	15606	1049	37	4		4	SYVN1	11	64899785	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	363207	64899785	70106731	732	101681											
PCNXL3	399909	broad.mit.edu	37	chr11	65385072	65385072	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgacacctctggggccAtggttgcagacatcaaggag	13	11	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65385072	G	G	65385072	1	3	103	0	1	0	0	0	0	0	0	0	11687	232	8	5		5	PCNXL3	11	65385072	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	485287	65385072	69621444	733	101682											
RIN1	9610	broad.mit.edu	37	chr11	66102525	66102525	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggaggtctctgtggacaCgcgcactttgaagcttctct	12	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66102525	T	T	66102525	3	4	103	1	0	0	0	0	1	0	0	0	13482	536	19	4	1626	4	RIN1	11	66102525	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	717453	66102525	68903991	734	101683											
DPP3	10072	broad.mit.edu	37	chr11	66252768	66252768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttggggaaggtggggatgGggggctggtggggtagagat	26	1	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66252768	T	T	66252768	1	4	103	0	1	0	0	0	0	0	0	0	4768	1247	43	2		2	DPP3	11	66252768	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	150243	66252768	68753748	735	101684											
SPTBN2	6712	broad.mit.edu	37	chr11	66461658	66461658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctgctcgcgagaagcCtgcaggcgccggcagcgttc	16	13	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66461658	A	A	66461658	3	1	103	1	0	0	0	0	1	0	0	0	15238	680	24	2	2785	2	SPTBN2	11	66461658	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	208890	66461658	68544858	736	101685											
MRGPRF	116535	broad.mit.edu	37	chr11	68777376	68777376	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttccagccatctccagGcctggcgcgtctgggcccct	11	17	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68777376	T	T	68777376	1	4	103	0	1	0	0	0	0	0	0	0	9859	1218	42	3		3	MRGPRF	11	68777376	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	2315718	68777376	66229140	737	101686											
MRGPRF	116535	broad.mit.edu	37	chr11	68777421	68777421	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcaccagtctgcacaCccacctggcagaagcccaga	9	17	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68777421	T	T	68777421	1	4	103	1	0	0	0	0	0	0	0	0	9859	522	18	4		4	MRGPRF	11	68777421	Translation_Start_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	45	68777421	66229095	738	101687											
B3GNT6	192134	broad.mit.edu	37	chr11	76750737	76750737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccgcaggaggagacgCcagagggtcccaccgacgct	15	15	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76750737	A	A	76750737	3	1	103	1	0	0	0	0	1	0	0	0	1266	739	26	3	144	3	B3GNT6	11	76750737	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	7973316	76750737	58255779	739	101688											
DLG2	1740	broad.mit.edu	37	chr11	84732529	84732530	+	Intron	DNP	AC	GT	GT													ggcatttctctcattaacatActgaaagaaggcaaagccgt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	84732530	GT	GT	84732529	1	3	103	0	1	0	0	0	0	0	0	0	4595	406	14	5		5	DLG2	11	84732529	Intron	DNP	AC	TCGA-38-4632-01A-01D-1753-08	7981792	84732529	50273987	740	101689											
FAT3	120114	broad.mit.edu	37	chr11	92495238	92495238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaatctcctacagtattGtggatgggaatgatgacgga	12	6	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92495238	T	T	92495238	3	4	103	1	0	0	0	0	1	0	0	0	5748	1377	48	3	3900	3	FAT3	11	92495238	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	7762709	92495238	42511278	741	101690											
MTNR1B	4544	broad.mit.edu	37	chr11	92714402	92714402	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccctagttcacaaatgAggaaaatggggctctgagag	12	9	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92714402	T	T	92714402	1	4	103	0	1	0	0	0	0	0	0	0	10046	319	11	5		5	MTNR1B	11	92714402	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	219164	92714402	42292114	742	101691											
AMOTL1	154810	broad.mit.edu	37	chr11	94554901	94554901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgattgtggagcgagcccagCaaatggtggagatattaaca	13	7	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94554901	A	A	94554901	3	1	103	1	0	0	0	0	1	0	0	0	583	711	25	3	1341	3	AMOTL1	11	94554901	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1840499	94554901	40451615	743	101692											
TRPC6	7225	broad.mit.edu	37	chr11	101342795	101342795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagtccatgctttcatcCccattgctgagttagccctt	8	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101342795	A	A	101342795	1	1	103	0	1	0	0	0	0	0	0	0	16708	638	22	2		2	TRPC6	11	101342795	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	6787894	101342795	33663721	744	101693											
MMP27	64066	broad.mit.edu	37	chr11	102562551	102562551	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaataccaaaaataaacaaGcttaaactcttatgatacaa	2	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102562551	A	A	102562551	2	1	103	1	0	0	0	0	0	0	0	1	9758	962	34	4		4	MMP27	11	102562551	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	1219756	102562551	32443965	745	101694											
CASP1	834	broad.mit.edu	37	chr11	104897650	104897650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaataaaaacagagccCattgtgggatgtctccaaga	8	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104897650	A	A	104897650	3	1	103	1	0	0	0	0	1	0	0	0	2694	594	21	2	187	2	CASP1	11	104897650	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2335099	104897650	30108866	746	101695											
KIAA1826	84437	broad.mit.edu	37	chr11	105881245	105881245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagttaaggatccacctgCatccctgaaatctgccacat	6	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105881245	A	A	105881245	3	1	103	1	0	0	0	0	1	0	0	0	8330	710	25	3	645	3	KIAA1826	11	105881245	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	983595	105881245	29125271	747	101696											
ATM	472	broad.mit.edu	37	chr11	108121360	108121360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgtaagagtaccatgtctAtatatttccttttagtttgt	6	5	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108121360	G	G	108121360	1	3	103	0	1	0	0	0	0	0	0	0	1113	464	16	5		5	ATM	11	108121360	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2240115	108121360	26885156	748	101697											
FAM55D	54827	broad.mit.edu	37	chr11	114441811	114441811	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctttatgatgagatatTgaatgtaaccatgaaagtca	8	5	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114441811	A	A	114441811	3	1	103	1	0	0	0	0	1	0	0	0	5638	1812	63	5	154	5	FAM55D	11	114441811	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	6320451	114441811	20564705	749	101698											
TMPRSS4	56649	broad.mit.edu	37	chr11	117985987	117985987	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccggaagggggtgtggacAcctgccaggtggggcctcca	17	12	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117985987	T	T	117985987	3	4	103	1	0	0	0	0	1	0	0	0	16372	159	6	5	1186	5	TMPRSS4	11	117985987	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	3544176	117985987	17020529	750	101699											
ARCN1	372	broad.mit.edu	37	chr11	118451821	118451821	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccggcatgggtgacagagTgagaccctgtcttaaaaata	11	9	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118451821	G	G	118451821	1	3	103	0	1	0	0	0	0	0	0	0	844	1711	59	5		5	ARCN1	11	118451821	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	465834	118451821	16554695	751	101700											
ARCN1	372	broad.mit.edu	37	chr11	118463522	118463522	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaacagtgacgtaggggtGctaaagtggagactacaaac	13	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118463522	T	T	118463522	2	4	103	1	0	0	0	0	0	0	0	1	844	1306	46	3		3	ARCN1	11	118463522	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	11701	118463522	16542994	752	101701											
ABCG4	64137	broad.mit.edu	37	chr11	119029413	119029413	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcctcatgttcgccgcCctcatgccaactgtgctcac	7	17	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119029413	A	A	119029413	2	1	103	1	0	0	0	0	0	0	0	1	70	610	22	2		2	ABCG4	11	119029413	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	565891	119029413	15977103	753	101702											
POU2F3	25833	broad.mit.edu	37	chr11	120175760	120175760	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttgggcaccctgggctgCcaggatcctctttagaaccc	10	14	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120175760	T	T	120175760	3	4	103	1	0	0	0	0	1	0	0	0	12369	739	26	4	492	4	POU2F3	11	120175760	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1146347	120175760	14830756	754	101703											
C11orf63	79864	broad.mit.edu	37	chr11	122775073	122775074	+	Frame_Shift_Ins	INS	-	T	T													gtggaaaaaaacaagctcacINStttgggattacccaccccga							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122775074	T	T	122775073	7	5	103	1	0	1	1	0	0	0	0	0	1666	565	20	0	791	0	C11orf63	11	122775073	Frame_Shift_Ins	INS	-	TCGA-38-4632-01A-01D-1753-08	2599313	122775073	12231443	755	101704											
OR10G9	219870	broad.mit.edu	37	chr11	123893726	123893726	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggtgagaagaaatgtccAagaccagcctcgtgacagcg	13	9	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123893726	T	T	123893726	4	4	103	1	0	0	0	0	0	1	0	0	10998	131	5	5	9	5	OR10G9	11	123893726	Nonsense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	1118653	123893726	11112790	756	101705											
OR8B8	26493	broad.mit.edu	37	chr11	124310801	124310801	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacaagttatagaggaagaAgtacataggggtgtgcaagt	15	3	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124310801	T	T	124310801	3	4	103	1	0	0	0	0	1	0	0	0	11324	72	3	5	757	5	OR8B8	11	124310801	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	417075	124310801	10695715	757	101706											
ROBO3	64221	broad.mit.edu	37	chr11	124742360	124742360	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttaacatcaccgcggtGcagcgtggggatgctgggta	14	10	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124742360	T	T	124742360	2	4	103	1	0	0	0	0	0	0	0	1	13626	1306	46	3		3	ROBO3	11	124742360	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	431559	124742360	10264156	758	101707											
NCAPD3	23310	broad.mit.edu	37	chr11	134047106	134047106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggacagattgaacccccCtacgcacctgcaagagattg	9	12	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134047106	A	A	134047106	1	1	103	0	1	0	0	0	0	0	0	0	10301	696	24	2		2	NCAPD3	11	134047106	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	9304746	134047106	959410	759	101708											
CCDC77	84318	broad.mit.edu	37	chr12	539914	539914	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagcaggtaacaaccatAtaacctattagaaattctca	4	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	539914	G	G	539914	1	3	103	0	1	0	0	0	0	0	0	0	2879	464	16	5		5	CCDC77	12	539914	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08		539914	133311981	760	101709											
CACNA1C	775	broad.mit.edu	37	chr12	2778097	2778097	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcttctcttcgcctgcAgcgcctggtctccatgaaca	8	15	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2778097	T	T	2778097	5	4	103	1	0	0	0	0	0	0	1	0	2566	202	7	5	5098	5	CACNA1C	12	2778097	Splice_Site	SNP	A	TCGA-38-4632-01A-01D-1753-08	2238183	2778097	131073798	761	101710											
PARP11	57097	broad.mit.edu	37	chr12	3949189	3949189	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatgggaactctactagccTgcctttggctagaaaggttc	10	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3949189	A	A	3949189	1	1	103	0	1	0	0	0	0	0	0	0	11550	1595	55	5		5	PARP11	12	3949189	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1171092	3949189	129902706	762	101711											
TNFRSF1A	7132	broad.mit.edu	37	chr12	6439583	6439583	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctatgtggccccagggacGagagagctactgatgcagct	14	11	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6439583	A	A	6439583	1	1	103	0	1	0	0	0	0	0	0	0	16416	1073	37	4		4	TNFRSF1A	12	6439583	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2490394	6439583	127412312	763	101712											
TNFRSF1A	7132	broad.mit.edu	37	chr12	6440156	6440156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaacacagaaaaacaacCacacagattgttggacatcc	8	10	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6440156	A	A	6440156	1	1	103	0	1	0	0	0	0	0	0	0	16416	609	21	2		2	TNFRSF1A	12	6440156	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	573	6440156	127411739	764	101713											
LEPREL2	10536	broad.mit.edu	37	chr12	6948210	6948210	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtggccttcagctccgGtgtcgagaatccccatgggg	13	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6948210	A	A	6948210	3	1	103	1	0	0	0	0	1	0	0	0	8803	1261	44	4	2005	4	LEPREL2	12	6948210	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	508054	6948210	126903685	765	101714											
ATN1	1822	broad.mit.edu	37	chr12	7050624	7050624	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcacgcacagtcagctgAgctgcagcgcttggcgctgg	14	13	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7050624	C	C	7050624	3	2	103	1	0	0	0	0	1	0	0	0	1115	304	11	5	3476	5	ATN1	12	7050624	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	102414	7050624	126801271	766	101715											
CLSTN3	9746	broad.mit.edu	37	chr12	7302053	7302053	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagagtggtgatgagggcaTggttgggtctcagaacctcc	17	7	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7302053	C	C	7302053	1	2	103	0	1	0	0	0	0	0	0	0	3595	1479	51	5		5	CLSTN3	12	7302053	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	251429	7302053	126549842	767	101716											
A2M	2	broad.mit.edu	37	chr12	9225370	9225370	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggaatttgctggaaaatGtccctgaagactggatagtc	11	7	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9225370	A	A	9225370	3	1	103	1	0	0	0	0	1	0	0	0	4	1377	48	4	598	4	A2M	12	9225370	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1923317	9225370	124626525	768	101717											
CLEC9A	283420	broad.mit.edu	37	chr12	10194175	10194175	+	5'UTR	DEL	G	-	-													agagtgagcagtactgcactGacatgaaggctactctcctg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10194175	-	-	10194175	6	5	103	0	1	1	0	1	0	0	0	0	3554	1305	45	0		0	CLEC9A	12	10194175	5'UTR	DEL	G	TCGA-38-4632-01A-01D-1753-08	968805	10194175	123657720	769	101718											
TAS2R10	50839	broad.mit.edu	37	chr12	10978949	10978949	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcatatattggctgctcgAcggaagtgtgactttcttct	11	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10978949	G	G	10978949	1	3	103	0	1	0	0	0	0	0	0	0	15685	290	10	5		5	TAS2R10	12	10978949	5'Flank	SNP	A	TCGA-38-4632-01A-01D-1753-08	784774	10978949	122872946	770	101719											
PRB4	5545	broad.mit.edu	37	chr12	11035531	11035531	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggttgggagaaaactgtTtgtatctttggggcattggt	14	4	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11035531	A	A	11035531	1	1	103	0	1	0	0	0	0	0	0	0	12551	1856	64	5		5	PRB4	12	11035531	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	56582	11035531	122816364	771	101720											
PIK3C2G	5288	broad.mit.edu	37	chr12	18446954	18446954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatttttacaaaagtaaGtattttatgaaattttggtt	6	1	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18446954	T	T	18446954	1	4	103	0	1	0	0	0	0	0	0	0	12006	1044	36	3		3	PIK3C2G	12	18446954	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	7411423	18446954	115404941	772	101721											
AEBP2	121536	broad.mit.edu	37	chr12	19615515	19615515	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aactccagcaatgatgaatgGacaaggaagcactacttctt	8	9	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19615515	A	A	19615515	3	1	103	1	0	0	0	0	1	0	0	0	350	1174	41	4	749	4	AEBP2	12	19615515	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1168561	19615515	114236380	773	101722											
SLCO1C1	53919	broad.mit.edu	37	chr12	20864455	20864455	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataagtaacggtaagatcatTtttttgacttgactaaacaa	6	5	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20864455	A	A	20864455	1	1	103	0	1	0	0	0	0	0	0	0	14839	1856	64	5		5	SLCO1C1	12	20864455	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1248940	20864455	112987440	774	101723											
ST8SIA1	6489	broad.mit.edu	37	chr12	22354362	22354362	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgcttggatcttcattGctcctttcctgtttttccaa	6	10	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22354362	T	T	22354362	1	4	103	0	1	0	0	0	0	0	0	0	15349	1334	46	3		3	ST8SIA1	12	22354362	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	1489907	22354362	111497533	775	101724											
PPFIBP1	8496	broad.mit.edu	37	chr12	27841066	27841066	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcaatgctttattagtatAtaagaaagcttgaaactcaa	6	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27841066	G	G	27841066	1	3	103	0	1	0	0	0	0	0	0	0	12409	464	16	5		5	PPFIBP1	12	27841066	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	5486704	27841066	106010829	776	101725											
CCDC91	55297	broad.mit.edu	37	chr12	28701853	28701853	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagtgactttactgtcAttcagttgaaagtactattt	8	5	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28701853	T	T	28701853	1	4	103	0	1	0	0	0	0	0	0	0	2898	232	8	5		5	CCDC91	12	28701853	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	860787	28701853	105150042	777	101726											
FAR2	55711	broad.mit.edu	37	chr12	29474839	29474839	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaatgctgatgtctgagctGagtcctgaagaccagagagt	13	7	1	6			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29474839	A	A	29474839	2	1	103	1	0	0	0	0	0	0	0	1	5732	1277	45	4		4	FAR2	12	29474839	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	772986	29474839	104377056	778	101727											
OVCH1	341350	broad.mit.edu	37	chr12	29607733	29607733	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaatgcttcttgccaaattCtggctgaaagtattaatggg	9	7	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29607733	G	G	29607733	1	3	103	0	1	0	0	0	0	0	0	0	11417	928	32	4		4	OVCH1	12	29607733	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	132894	29607733	104244162	779	101728											
IPO8	10526	broad.mit.edu	37	chr12	30784831	30784831	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggttactctggctgacctGccaccgtccgtcggtgctct	12	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30784831	A	A	30784831	3	1	103	1	0	0	0	0	1	0	0	0	7868	1319	46	4	107	4	IPO8	12	30784831	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1177098	30784831	103067064	780	101729											
TSPAN11	441631	broad.mit.edu	37	chr12	31135488	31135488	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaagtgctgtggaagcaacAgctcagccgactggcagcac	12	12	2	0	rs148719778	by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31135488	T	T	31135488	3	4	103	1	0	0	0	0	1	0	0	0	16760	188	7	5	496	5	TSPAN11	12	31135488	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	350657	31135488	102716407	781	101730											
PKP2	5318	broad.mit.edu	37	chr12	32977151	32977151	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggctgtgtatccaacaggTctttgttttgaagttttact	9	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32977151	C	C	32977151	1	2	103	0	1	0	0	0	0	0	0	0	12080	1682	58	5		5	PKP2	12	32977151	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1841663	32977151	100874744	782	101731											
SYT10	341359	broad.mit.edu	37	chr12	33559996	33559996	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagatacatcttcacataagGgtcagaagttcctgtgaagt	9	7	3	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33559996	C	C	33559996	3	2	103	1	0	0	0	0	1	0	0	0	15585	1232	43	4	786	4	SYT10	12	33559996	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	582845	33559996	100291899	783	101732											
NELL2	4753	broad.mit.edu	37	chr12	44926385	44926385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacacgattctccacttgGtgaaaacatcccattgtcat	5	12	3	1	rs80147310		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44926385	T	T	44926385	3	4	103	1	0	0	0	0	1	0	0	0	10429	1261	44	3	687	3	NELL2	12	44926385	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	11366389	44926385	88925510	784	101733											
SENP1	29843	broad.mit.edu	37	chr12	48482982	48482982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgaatcctgccacagcCatgtgccttatctgcatcaa	8	13	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48482982	A	A	48482982	1	1	103	0	1	0	0	0	0	0	0	0	14159	609	21	2		2	SENP1	12	48482982	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3556597	48482982	85368913	785	101734											
PFKM	5213	broad.mit.edu	37	chr12	48537621	48537621	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcatccatggtttgttccTaaatgaagaagaaaaataag	7	7	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48537621	G	G	48537621	1	3	103	0	1	0	0	0	0	0	0	0	11860	1537	53	5		5	PFKM	12	48537621	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	54639	48537621	85314274	786	101735											
LALBA	3906	broad.mit.edu	37	chr12	48963044	48963044	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagggaaagatgagaaagAgataccacagagatgtacag	13	5	0	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48963044	T	T	48963044	1	4	103	0	1	0	0	0	0	0	0	0	8676	319	11	5		5	LALBA	12	48963044	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	425423	48963044	84888851	787	101736											
DNAJC22	79962	broad.mit.edu	37	chr12	49742618	49742618	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccgagacttctgtgctgcGagtaaccggacttgttctga	11	12	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49742618	A	A	49742618	1	1	103	0	1	0	0	0	0	0	0	0	4681	1073	37	4		4	DNAJC22	12	49742618	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	779574	49742618	84109277	788	101737											
KCNH3	23416	broad.mit.edu	37	chr12	49937199	49937199	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacactctatgtggctgtcActgtgccctacagcgtgtgt	10	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49937199	G	G	49937199	3	3	103	1	0	0	0	0	1	0	0	0	8103	159	6	5	739	5	KCNH3	12	49937199	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	194581	49937199	83914696	789	101738											
FAIM2	23017	broad.mit.edu	37	chr12	50282944	50282944	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgctgaagaaaagagtcatGagaagcacgaagagcacgcc	12	10	1	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50282944	A	A	50282944	2	1	103	1	0	0	0	0	0	0	0	1	5422	1277	45	4		4	FAIM2	12	50282944	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	345745	50282944	83568951	790	101739											
LETMD1	25875	broad.mit.edu	37	chr12	51443033	51443033	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcaaagagttagcatAaataagatcatttgcaggtt	10	5	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51443033	C	C	51443033	1	2	103	0	1	0	0	0	0	0	0	0	8808	377	13	5		5	LETMD1	12	51443033	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1160089	51443033	82408862	791	101740											
ANKRD33	341405	broad.mit.edu	37	chr12	52282384	52282384	+	Translation_Start_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagaaaagggactcaccttCtggttccctgcctggaagag	12	10	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52282384	A	A	52282384	1	1	103	1	0	0	0	0	0	0	0	0	661	912	32	3		3	ANKRD33	12	52282384	Translation_Start_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	839351	52282384	81569511	792	101741											
ESPL1	9700	broad.mit.edu	37	chr12	53682786	53682786	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtttgccatgtgggagaTgagatagggactgttccttc	14	7	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53682786	C	C	53682786	1	2	103	0	1	0	0	0	0	0	0	0	5295	1479	51	5		5	ESPL1	12	53682786	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1400402	53682786	80169109	793	101742											
CALCOCO1	57658	broad.mit.edu	37	chr12	54109899	54109899	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcagccagggaggtaaacGctccctccactccactgcat	8	16	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54109899	A	A	54109899	1	1	103	0	1	0	0	0	0	0	0	0	2603	1102	38	4		4	CALCOCO1	12	54109899	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	427113	54109899	79741996	794	101743											
HOXC10	3226	broad.mit.edu	37	chr12	54379623	54379623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaatcgcctcagctggggGgcaaagtgagtttccctgag	15	9	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54379623	T	T	54379623	3	4	103	1	0	0	0	0	1	0	0	0	7376	1232	43	2	582	2	HOXC10	12	54379623	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	269724	54379623	79472272	795	101744											
ITGA7	3679	broad.mit.edu	37	chr12	56078798	56078798	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaaggagccatctctgggGaagggatggagggcagccac	16	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56078798	T	T	56078798	1	4	103	0	1	0	0	0	0	0	0	0	7951	1189	41	3		3	ITGA7	12	56078798	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	1699175	56078798	77773097	796	101745											
ERBB3	2065	broad.mit.edu	37	chr12	56495852	56495852	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgtaactcctgctccctGtggcactcagggagcattta	10	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56495852	T	T	56495852	1	4	103	0	1	0	0	0	0	0	0	0	5250	1392	48	3		3	ERBB3	12	56495852	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	417054	56495852	77356043	797	101746											
MIP	4284	broad.mit.edu	37	chr12	56845342	56845342	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttagtggaaaacaagataTtgtacacttgatatctacaa	6	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56845342	C	C	56845342	1	2	103	0	1	0	0	0	0	0	0	0	9684	1508	52	5		5	MIP	12	56845342	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	349490	56845342	77006553	798	101747											
MIP	4284	broad.mit.edu	37	chr12	56846752	56846752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttagctgagtgctggtaCagcagccaacacacgcagaa	10	13	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56846752	A	A	56846752	1	1	103	0	1	0	0	0	0	0	0	0	9684	493	17	3		3	MIP	12	56846752	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1410	56846752	77005143	799	101748											
MIP	4284	broad.mit.edu	37	chr12	56848062	56848062	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgagtgctaggtttcctcgGacagcaggtggggtaacgct	15	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56848062	T	T	56848062	2	4	103	1	0	0	0	0	0	0	0	1	9684	1161	41	3		3	MIP	12	56848062	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	1310	56848062	77003833	800	101749											
ZBTB39	9880	broad.mit.edu	37	chr12	57396914	57396914	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcccaggttggccctgCagcgccagctcttcacccag	10	17	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57396914	T	T	57396914	2	4	103	1	0	0	0	0	0	0	0	1	17666	697	25	4		4	ZBTB39	12	57396914	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	548852	57396914	76454981	801	101750											
KIF5A	3798	broad.mit.edu	37	chr12	57957545	57957545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcagggaatctcagtgggGgaaggtctaggaatcaagga	16	5	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57957545	T	T	57957545	1	4	103	0	1	0	0	0	0	0	0	0	8375	1247	43	2		2	KIF5A	12	57957545	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	560631	57957545	75894350	802	101751											
AGAP2	116986	broad.mit.edu	37	chr12	58124496	58124496	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcctactcgcccagtgccAgccccctcttccctcttacc	4	22	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58124496	T	T	58124496	1	4	103	0	1	0	0	0	0	0	0	0	368	203	7	5		5	AGAP2	12	58124496	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	166951	58124496	75727399	803	101752											
LRIG3	121227	broad.mit.edu	37	chr12	59276602	59276602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatttggataaatgggagGgggaaaaaagaagaataaat	12	0	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59276602	T	T	59276602	1	4	103	0	1	0	0	0	0	0	0	0	9033	1247	43	2		2	LRIG3	12	59276602	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1152106	59276602	74575293	804	101753											
DPY19L2	283417	broad.mit.edu	37	chr12	64055011	64055011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaactataaggatacacaCaattaataaacctgaaacgt	4	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64055011	A	A	64055011	1	1	103	0	1	0	0	0	0	0	0	0	4781	493	17	3		3	DPY19L2	12	64055011	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4778409	64055011	69796884	805	101754											
LGR5	8549	broad.mit.edu	37	chr12	71834077	71834077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcacctcctacctgtaaGtacttccccacgtcactccg	4	18	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71834077	T	T	71834077	1	4	103	0	1	0	0	0	0	0	0	0	8829	1044	36	3		3	LGR5	12	71834077	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	7779066	71834077	62017818	806	101755											
KCNC2	3747	broad.mit.edu	37	chr12	75601598	75601598	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgacagtggaggcggcgacgGctgcagcttgtcgcccgccg	17	14	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75601598	C	C	75601598	3	2	103	1	0	0	0	0	1	0	0	0	8085	1203	42	4	1832	4	KCNC2	12	75601598	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3767521	75601598	58250297	807	101756											
NAV3	89795	broad.mit.edu	37	chr12	78334186	78334186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagacattgcagatggaGtactcctagcagaaatcatc	8	9	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78334186	T	T	78334186	3	4	103	1	0	0	0	0	1	0	0	0	10279	1029	36	3	337	3	NAV3	12	78334186	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2732588	78334186	55517709	808	101757											
C12orf50	160419	broad.mit.edu	37	chr12	88377040	88377040	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattccaagggtgtttcaaaGttataaacatctcaggggtg	10	6	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88377040	C	C	88377040	1	2	103	0	1	0	0	0	0	0	0	0	1708	1044	36	4		4	C12orf50	12	88377040	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	10042854	88377040	45474855	809	101758											
CDK17	5128	broad.mit.edu	37	chr12	96692734	96692734	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctctgtcaatttacttcTtcctttatatactgttgcat	3	9	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96692734	C	C	96692734	3	2	103	1	0	0	0	0	1	0	0	0	3163	1617	56	5	1025	5	CDK17	12	96692734	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	8315694	96692734	37159161	810	101759											
GOLGA2B	55592	broad.mit.edu	37	chr12	100564722	100564722	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctctactcacctgtaacTgctcccttagggctccctgc	6	17	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100564722	A	A	100564722	1	1	103	0	1	0	0	0	0	0	0	0	6617	1595	55	5		5	GOLGA2B	12	100564722	5'UTR	SNP	T	TCGA-38-4632-01A-01D-1753-08	3871988	100564722	33287173	811	101760											
SLC5A8	160728	broad.mit.edu	37	chr12	101577997	101577997	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccagtaccaaataaggcaTgagctgaaaaattccaaaat	7	8	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101577997	A	A	101577997	3	1	103	1	0	0	0	0	1	0	0	0	14785	1464	51	5	897	5	SLC5A8	12	101577997	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	1013275	101577997	32273898	812	101761											
HCFC2	29915	broad.mit.edu	37	chr12	104476242	104476242	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccaagaagtaaaatgaaaTaagctactttatgtttttgt	6	4	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104476242	A	A	104476242	1	1	103	0	1	0	0	0	0	0	0	0	7059	1421	49	5		5	HCFC2	12	104476242	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	2898245	104476242	29375653	813	101762											
CCDC63	160762	broad.mit.edu	37	chr12	111330844	111330844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtggggagggaagagcCcacttttcctcatggtcttg	14	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111330844	A	A	111330844	1	1	103	0	1	0	0	0	0	0	0	0	2862	638	22	2		2	CCDC63	12	111330844	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	6854602	111330844	22521051	814	101763											
CUX2	23316	broad.mit.edu	37	chr12	111701430	111701434	+	Intron	DEL	AAAAC	-	-													cagagcaagactctctctcaAaaacaaaacaaaacaaaaca					rs113958521		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111701434	-	-	111701430	6	5	103	0	1	1	0	1	0	0	0	0	4098	29	1	0		0	CUX2	12	111701430	Intron	DEL	AAAAC	TCGA-38-4632-01A-01D-1753-08	370586	111701430	22150465	815	101764											
MAPKAPK5	8550	broad.mit.edu	37	chr12	112326315	112326315	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggttgcaggaatccagcaGgctcacgcggaacagttggc	15	10	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112326315	A	A	112326315	2	1	103	1	0	0	0	0	0	0	0	1	9383	991	35	4		4	MAPKAPK5	12	112326315	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	624885	112326315	21525580	816	101765											
C12orf51	283450	broad.mit.edu	37	chr12	112708216	112708216	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtatgcacatcgcaccaaCgtggtgcaataattggttta	10	8	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112708216	T	T	112708216	3	4	103	1	0	0	0	0	1	0	0	0	1709	536	19	4	11556	4	C12orf51	12	112708216	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	381901	112708216	21143679	817	101766											
DTX1	1840	broad.mit.edu	37	chr12	113515322	113515322	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaacgacggcggcgcatGgacggcctacgatatggaca	16	10	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113515322	C	C	113515322	3	2	103	1	0	0	0	0	1	0	0	0	4833	1357	47	4	359	4	DTX1	12	113515322	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	807106	113515322	20336573	818	101767											
RBM19	9904	broad.mit.edu	37	chr12	114260999	114260999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcccggtccccagggcCccggagccacacaccctctc	10	21	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114260999	A	A	114260999	1	1	103	0	1	0	0	0	0	0	0	0	13229	638	22	2		2	RBM19	12	114260999	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	745677	114260999	19590896	819	101768											
KSR2	283455	broad.mit.edu	37	chr12	118105377	118105377	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagcgctcggacagcagcGgggagcgctgctgagagggg	22	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118105377	A	A	118105377	3	1	103	1	0	0	0	0	1	0	0	0	8654	1116	39	4	1843	4	KSR2	12	118105377	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	3844378	118105377	15746518	820	101769											
SIRT4	23409	broad.mit.edu	37	chr12	120741852	120741852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacagagctccacggatGcatggacaggtgcaggagct	14	11	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120741852	T	T	120741852	3	4	103	1	0	0	0	0	1	0	0	0	14453	1319	46	3	490	3	SIRT4	12	120741852	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2636475	120741852	13110043	821	101770											
ANAPC5	51433	broad.mit.edu	37	chr12	121773309	121773309	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcggttccttcaatttgCgcaaggacaaaggtctataa	8	9	3	0	rs113720618	by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121773309	G	G	121773309	1	3	103	0	1	0	0	0	0	0	0	0	605	783	27	4		4	ANAPC5	12	121773309	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1031457	121773309	12078586	822	101771											
NCOR2	9612	broad.mit.edu	37	chr12	124886833	124886833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagcagaaagccctcccccCtgctcacaggcaattggtgg	11	15	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124886833	A	A	124886833	1	1	103	0	1	0	0	0	0	0	0	0	10331	696	24	2		2	NCOR2	12	124886833	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3113524	124886833	8965062	823	101772											
SLC15A4	121260	broad.mit.edu	37	chr12	129294483	129294483	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaacctgtttgtcaccaCtcacttggaaatacactgtc	5	11	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129294483	A	A	129294483	1	1	103	0	1	0	0	0	0	0	0	0	14514	580	20	3		3	SLC15A4	12	129294483	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4407650	129294483	4557412	824	101773											
EP400	57634	broad.mit.edu	37	chr12	132516359	132516359	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccacccacctcggcctccCaaagtgctgggattacaggt	9	15	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132516359	T	T	132516359	1	4	103	0	1	0	0	0	0	0	0	0	5191	609	21	4		4	EP400	12	132516359	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3221876	132516359	1335536	825	101774											
RNF17	56163	broad.mit.edu	37	chr13	25442861	25442861	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcacctaatgaagtatgtGatctaaatgattagttggtg	9	5	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25442861	T	T	25442861	1	4	103	0	1	0	0	0	0	0	0	0	13572	1305	45	3		3	RNF17	13	25442861	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08		25442861	89727017	826	101775											
KL	9365	broad.mit.edu	37	chr13	33628269	33628269	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggaatctcccaacctgagGcaactgctttcctggattga	9	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33628269	C	C	33628269	3	2	103	1	0	0	0	0	1	0	0	0	8402	1194	42	4	1191	4	KL	13	33628269	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	8185408	33628269	81541609	827	101776											
ELF1	1997	broad.mit.edu	37	chr13	41567353	41567353	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cattcctaacagtgaggcagGagcagctgcaacaacagcac	10	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41567353	C	C	41567353	1	2	103	0	1	0	0	0	0	0	0	0	5095	1189	41	4		4	ELF1	13	41567353	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	7939084	41567353	73602525	828	101777											
HTR2A	3356	broad.mit.edu	37	chr13	47409209	47409209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtactgacactgaatataCcgtgaaaaggctgacctata	8	8	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47409209	A	A	47409209	2	1	103	1	0	0	0	0	0	0	0	1	7511	494	18	3		3	HTR2A	13	47409209	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	5841856	47409209	67760669	829	101778											
HTR2A	3356	broad.mit.edu	37	chr13	47466626	47466626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatggcgacgtagcggtccAgcgagatggcgcagaggtgc	19	9	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47466626	T	T	47466626	3	4	103	1	0	0	0	0	1	0	0	0	7511	188	7	5	911	5	HTR2A	13	47466626	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	57417	47466626	67703252	830	101779											
SUCLA2	8803	broad.mit.edu	37	chr13	48547323	48547323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataagttttgacaattaCttcagttgtacggttatctt	6	5	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48547323	A	A	48547323	1	1	103	0	1	0	0	0	0	0	0	0	15481	580	20	3		3	SUCLA2	13	48547323	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1080697	48547323	66622555	831	101780											
CLN5	1203	broad.mit.edu	37	chr13	77569228	77569228	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccgtccaaaacctgatccTtattgtcaagctaagtatac	5	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77569228	G	G	77569228	2	3	103	1	0	0	0	0	0	0	0	1	3576	1596	56	5		5	CLN5	13	77569228	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	29021905	77569228	37600650	832	101781											
CLN5	1203	broad.mit.edu	37	chr13	77569333	77569333	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacaagccccagtatgggaAtttaaatatggagacctcct	8	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77569333	G	G	77569333	2	3	103	1	0	0	0	0	0	0	0	1	3576	98	4	5		5	CLN5	13	77569333	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	105	77569333	37600545	833	101782											
SLITRK1	114798	broad.mit.edu	37	chr13	84453480	84453480	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgggtacacgcccctccAgcccccggggtgcctgcggt	13	16	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84453480	T	T	84453480	1	4	103	0	1	0	0	0	0	0	0	0	14856	203	7	5		5	SLITRK1	13	84453480	3'UTR	SNP	A	TCGA-38-4632-01A-01D-1753-08	6884147	84453480	30716398	834	101783											
GPC6	10082	broad.mit.edu	37	chr13	95034836	95034836	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgatgtgtgcatggatgggGgcacagcacacccagccttg	14	11	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95034836	C	C	95034836	1	2	103	0	1	0	0	0	0	0	0	0	6667	1247	43	4		4	GPC6	13	95034836	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	10581356	95034836	20135042	835	101784											
DCT	1638	broad.mit.edu	37	chr13	95092211	95092211	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccattaggggtgtatatcCttttcgaagtcttctatatt	7	8	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95092211	A	A	95092211	4	1	103	1	0	0	0	0	0	1	0	0	4337	690	24	2	62	2	DCT	13	95092211	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	57375	95092211	20077667	836	101785											
PCCA	5095	broad.mit.edu	37	chr13	101121523	101121523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcctgaaaaagaggaagGcttattaagccttcagagct	9	8	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101121523	T	T	101121523	1	4	103	0	1	0	0	0	0	0	0	0	11598	1218	42	3		3	PCCA	13	101121523	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	6029312	101121523	14048355	837	101786											
NALCN	259232	broad.mit.edu	37	chr13	101833673	101833673	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtgccacagaggtcacGgataagagagggaggctgga	17	6	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101833673	C	C	101833673	1	2	103	0	1	0	0	0	0	0	0	0	10242	1131	39	4		4	NALCN	13	101833673	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	712150	101833673	13336205	838	101787											
NALCN	259232	broad.mit.edu	37	chr13	102051499	102051499	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggttagctttggtgagCaagcacaaaaccacagtctg	11	9	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102051499	A	A	102051499	1	1	103	0	1	0	0	0	0	0	0	0	10242	725	25	3		3	NALCN	13	102051499	5'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	217826	102051499	13118379	839	101788											
COL4A1	1282	broad.mit.edu	37	chr13	110819542	110819542	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggaggccccatatcaccCttagagcctgtgattcctgg	10	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110819542	T	T	110819542	2	4	103	1	0	0	0	0	0	0	0	1	3721	680	24	4		4	COL4A1	13	110819542	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	8768043	110819542	4350336	840	101789											
COL4A2	1284	broad.mit.edu	37	chr13	111077259	111077259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcctcatgagggtggcgGgtatctcagccttggttaat	14	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111077259	T	T	111077259	1	4	103	0	1	0	0	0	0	0	0	0	3722	1247	43	2		2	COL4A2	13	111077259	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	257717	111077259	4092619	841	101790											
CARS2	79587	broad.mit.edu	37	chr13	111319904	111319904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctatttattccttccagcCtttttaattcaatgaataaa	3	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111319904	A	A	111319904	1	1	103	0	1	0	0	0	0	0	0	0	2684	696	24	2		2	CARS2	13	111319904	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	242645	111319904	3849974	842	101791											
MCF2L	23263	broad.mit.edu	37	chr13	113714873	113714873	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgtctgcagagcacGctgcaggcccttgtctctcg	13	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113714873	A	A	113714873	1	1	103	0	1	0	0	0	0	0	0	0	9472	1102	38	4		4	MCF2L	13	113714873	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2394969	113714873	1455005	843	101792											
RASA3	22821	broad.mit.edu	37	chr13	114773056	114773056	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acactcttggggtctcttctCcccgaggacgaaatcagatc	9	13	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114773056	A	A	114773056	2	1	103	1	0	0	0	0	0	0	0	1	13170	842	30	3		3	RASA3	13	114773056	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	1058183	114773056	396822	844	101793											
OR4Q3	441669	broad.mit.edu	37	chr14	20216191	20216191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaggtgctggtgatagCcaacagtggtctgctgtctc	15	8	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20216191	A	A	20216191	3	1	103	1	0	0	0	0	1	0	0	0	11175	739	26	3	607	3	OR4Q3	14	20216191	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08		20216191	87133349	845	101794											
SALL2	6297	broad.mit.edu	37	chr14	21990402	21990402	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagataggggacccatacCcaccagctgagcagaaaggt	12	10	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21990402	T	T	21990402	1	4	103	0	1	0	0	0	0	0	0	0	13922	638	22	4		4	SALL2	14	21990402	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	1774211	21990402	85359138	846	101795											
MYH7	4625	broad.mit.edu	37	chr14	23898980	23898980	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccaagaatccctgcctcCcaccttcagtgccgtctggc	7	20	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23898980	T	T	23898980	1	4	103	0	1	0	0	0	0	0	0	0	10133	638	22	4		4	MYH7	14	23898980	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1908578	23898980	83450560	847	101796											
PSME2	5721	broad.mit.edu	37	chr14	24612995	24612995	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccttcttagcaccaagaAataggatcccaaaggactga	7	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24612995	C	C	24612995	1	2	103	0	1	0	0	0	0	0	0	0	12813	29	1	5		5	PSME2	14	24612995	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	714015	24612995	82736545	848	101797											
PSME2	5721	broad.mit.edu	37	chr14	24614409	24614409	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctttctcatccagtagtcaGtgtgccatcaccccttccct	5	17	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24614409	C	C	24614409	1	2	103	0	1	0	0	0	0	0	0	0	12813	1044	36	4		4	PSME2	14	24614409	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1414	24614409	82735131	849	101798											
TGM1	7051	broad.mit.edu	37	chr14	24727494	24727494	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggggcccagcttaccacTgctagtctcttggggtgtgg	16	10	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24727494	A	A	24727494	3	1	103	1	0	0	0	0	1	0	0	0	15952	1580	55	5	1082	5	TGM1	14	24727494	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	113085	24727494	82622046	850	101799											
NYNRIN	57523	broad.mit.edu	37	chr14	24884816	24884816	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaccgcctgctcaccccCgcggcctccatgcctcgctt	9	20	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24884816	T	T	24884816	2	4	103	1	0	0	0	0	0	0	0	1	10891	639	23	4		4	NYNRIN	14	24884816	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	157322	24884816	82464724	851	101800											
GZMH	2999	broad.mit.edu	37	chr14	25076845	25076845	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcatgatgtcgttggagaaGttcttaggattataggctgg	14	4	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25076845	C	C	25076845	3	2	103	1	0	0	0	0	1	0	0	0	6982	1020	36	4	440	4	GZMH	14	25076845	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	192029	25076845	82272695	852	101801											
PRKD1	5587	broad.mit.edu	37	chr14	30135337	30135337	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcatttctccacagtgatCacagaaagctggagctctgt	9	11	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30135337	T	T	30135337	3	4	103	1	0	0	0	0	1	0	0	0	12624	826	29	4	2321	4	PRKD1	14	30135337	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	5058492	30135337	77214203	853	101802											
HEATR5A	25938	broad.mit.edu	37	chr14	31774347	31774347	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctttccctctccaaacTctggcagagtttccttttca	5	14	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31774347	A	A	31774347	3	1	103	1	0	0	0	0	1	0	0	0	7098	1551	54	5	1157	5	HEATR5A	14	31774347	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	1639010	31774347	75575193	854	101803											
SEC23A	10484	broad.mit.edu	37	chr14	39543704	39543704	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaataacatggccagttgTagcagctcgattagccaatg	9	9	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39543704	C	C	39543704	3	2	103	1	0	0	0	0	1	0	0	0	14104	1638	57	5	1327	5	SEC23A	14	39543704	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	7769357	39543704	67805836	855	101804											
PYGL	5836	broad.mit.edu	37	chr14	51404380	51404380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttactttatttttttgtgCaatgtccccaagtttcctga	5	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51404380	A	A	51404380	1	1	103	0	1	0	0	0	0	0	0	0	12969	725	25	3		3	PYGL	14	51404380	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	11860676	51404380	55945160	856	101805											
HSPA2	3306	broad.mit.edu	37	chr14	65008744	65008744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaatcagagaatgtgcagGacctgctgctactcgacgtg	11	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65008744	T	T	65008744	3	4	103	1	0	0	0	0	1	0	0	0	7480	1174	41	3	1179	3	HSPA2	14	65008744	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	13604364	65008744	42340796	857	101806											
PCNX	22990	broad.mit.edu	37	chr14	71495557	71495557	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaggctatatttctatAtgaaggttgttttaaaatca	6	4	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71495557	G	G	71495557	1	3	103	0	1	0	0	0	0	0	0	0	11685	464	16	5		5	PCNX	14	71495557	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	6486813	71495557	35853983	858	101807											
ZFYVE1	53349	broad.mit.edu	37	chr14	73440837	73440837	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcccagagtgttctgcacGgcctcgcccaccttccgagc	10	18	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73440837	A	A	73440837	2	1	103	1	0	0	0	0	0	0	0	1	17789	1103	39	4		4	ZFYVE1	14	73440837	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	1945280	73440837	33908703	859	101808											
DNAL1	83544	broad.mit.edu	37	chr14	74125618	74125618	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgcccagattccccctatAgagaagatggatgcatcctt	8	11	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74125618	G	G	74125618	3	3	103	1	0	0	0	0	1	0	0	0	4697	410	15	5	121	5	DNAL1	14	74125618	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	684781	74125618	33223922	860	101809											
SEL1L	6400	broad.mit.edu	37	chr14	81951977	81951977	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agataaacaacatagggaggTccctgggtgaaactcttatc	10	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81951977	C	C	81951977	1	2	103	0	1	0	0	0	0	0	0	0	14123	1682	58	5		5	SEL1L	14	81951977	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	7826359	81951977	25397563	861	101810											
KCNK10	54207	broad.mit.edu	37	chr14	88693646	88693646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacaatgcccctgatactGcctcctggatcctgtcaggc	9	15	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88693646	T	T	88693646	1	4	103	0	1	0	0	0	0	0	0	0	8129	1334	46	3		3	KCNK10	14	88693646	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	6741669	88693646	18655894	862	101811											
FOXN3	1112	broad.mit.edu	37	chr14	89647103	89647103	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggccgcacgccaggaaacaGccctcggctcaggacccgcg	13	18	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89647103	C	C	89647103	3	2	103	1	0	0	0	0	1	0	0	0	6081	962	34	4	621	4	FOXN3	14	89647103	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	953457	89647103	17702437	863	101812											
BTBD7	55727	broad.mit.edu	37	chr14	93709128	93709128	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accttgcgaaggggaaggggTgcgtctgctgagagcaggag	19	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93709128	G	G	93709128	3	3	103	1	0	0	0	0	1	0	0	0	1556	1696	59	5	512	5	BTBD7	14	93709128	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	4062025	93709128	13640412	864	101813											
DYNC1H1	1778	broad.mit.edu	37	chr14	102461090	102461090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagatctcaacaaatgGcaggctctcctggtccaaat	10	10	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102461090	T	T	102461090	3	4	103	1	0	0	0	0	1	0	0	0	4881	1212	42	3	3287	3	DYNC1H1	14	102461090	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	8751962	102461090	4888450	865	101814											
BRF1	2972	broad.mit.edu	37	chr14	105692651	105692651	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggaacagggcaagaggCttcgtgaagggaggccctgg	18	7	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105692651	T	T	105692651	1	4	103	0	1	0	0	0	0	0	0	0	1519	812	28	4		4	BRF1	14	105692651	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3231561	105692651	1656889	866	101815											
GABRB3	2562	broad.mit.edu	37	chr15	26806027	26806027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcatgcaagtaaatgcaGtagctgctgagctgcaggga	12	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806027	T	T	26806027	1	4	103	0	1	0	0	0	0	0	0	0	6228	1044	36	3		3	GABRB3	15	26806027	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08		26806027	75725365	867	101816											
GABRB3	2562	broad.mit.edu	37	chr15	26866615	26866615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagcgtgaggttgagagGgatcccagaataggcgagcc	16	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26866615	T	T	26866615	3	4	103	1	0	0	0	0	1	0	0	0	6228	1232	43	2	1138	2	GABRB3	15	26866615	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	60588	26866615	75664777	868	101817											
GABRA5	2558	broad.mit.edu	37	chr15	27182439	27182439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagtaccacctgatggggCagacggtgggcactgagaac	14	11	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182439	A	A	27182439	3	1	103	1	0	0	0	0	1	0	0	0	6224	711	25	3	710	3	GABRA5	15	27182439	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	315824	27182439	75348953	869	101818											
HERC2	8924	broad.mit.edu	37	chr15	28427530	28427530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccaccctgctgggtccCagggagcaggccgtaccttg	13	16	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28427530	A	A	28427530	1	1	103	0	1	0	0	0	0	0	0	0	7125	609	21	2		2	HERC2	15	28427530	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1245091	28427530	74103862	870	101819											
HERC2	8924	broad.mit.edu	37	chr15	28474639	28474639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggaataagtctttgcCatccacaaaacatcgcatac	5	13	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28474639	A	A	28474639	3	1	103	1	0	0	0	0	1	0	0	0	7125	595	21	2	9661	2	HERC2	15	28474639	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	47109	28474639	74056753	871	101820											
TRPM1	4308	broad.mit.edu	37	chr15	31330099	31330099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctaaatgggaaatgcaaGgcactccggcacacaggcac	12	11	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31330099	T	T	31330099	1	4	103	0	1	0	0	0	0	0	0	0	16710	1015	35	2		2	TRPM1	15	31330099	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2855460	31330099	71201293	872	101821											
TRPM1	4308	broad.mit.edu	37	chr15	31354658	31354658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatttggtatgcatttgtaCtgtctctcagaaaaggccgg	10	8	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31354658	A	A	31354658	1	1	103	0	1	0	0	0	0	0	0	0	16710	580	20	3		3	TRPM1	15	31354658	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	24559	31354658	71176734	873	101822											
C15orf41	84529	broad.mit.edu	37	chr15	36906097	36906097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgaaggagacttggaacGcacagagaatgagctgagct	13	8	0	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36906097	T	T	36906097	1	4	103	0	1	0	0	0	0	0	0	0	1808	1102	38	3		3	C15orf41	15	36906097	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	5551439	36906097	65625295	874	101823											
MEIS2	4212	broad.mit.edu	37	chr15	37184257	37184257	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgatgaaaaatgacaaaaGtaaaaaataatcacagctgt	6	5	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37184257	T	T	37184257	1	4	103	0	1	0	0	0	0	0	0	0	9561	1044	36	3		3	MEIS2	15	37184257	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	278160	37184257	65347135	875	101824											
PLA2G4D	283748	broad.mit.edu	37	chr15	42374529	42374529	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccaatggtcaagggcctcAggggcacagtgaggtaccca	13	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42374529	G	G	42374529	3	3	103	1	0	0	0	0	1	0	0	0	12099	188	7	5	1773	5	PLA2G4D	15	42374529	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	5190272	42374529	60156863	876	101825											
PLA2G4D	283748	broad.mit.edu	37	chr15	42376058	42376058	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccctctgagacccactGtcccaaatccaccacacaca	3	19	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42376058	A	A	42376058	1	1	103	0	1	0	0	0	0	0	0	0	12099	1392	48	4		4	PLA2G4D	15	42376058	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1529	42376058	60155334	877	101826											
VPS39	23339	broad.mit.edu	37	chr15	42454056	42454056	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagcaactgtgtcctcttTcagtcgtcacagattcttct	7	13	5	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42454056	A	A	42454056	1	1	103	0	1	0	0	0	0	0	0	0	17336	1798	62	5		5	VPS39	15	42454056	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	77998	42454056	60077336	878	101827											
DUOX2	50506	broad.mit.edu	37	chr15	45404928	45404928	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accggcagcctgcggaggcaGggagcggggctctgtctaag	18	11	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45404928	A	A	45404928	1	1	103	0	1	0	0	0	0	0	0	0	4841	1015	35	4		4	DUOX2	15	45404928	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2950872	45404928	57126464	879	101828											
SLC12A1	6557	broad.mit.edu	37	chr15	48551398	48551399	+	Missense_Mutation	DNP	CC	AA	AA													atcttttttttacttccaggCcccagtgcattgtcttaaca							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	48551399	AA	AA	48551398	3	1	103	1	0	0	0	0	1	0	0	0	14495	753	26	3	2206	3	SLC12A1	15	48551398	Missense_Mutation	DNP	CC	TCGA-38-4632-01A-01D-1753-08	3146470	48551398	53979994	880	101829											
CEP152	22995	broad.mit.edu	37	chr15	49036530	49036530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattttcaatggcccctgCtgacaatgacctaaaaaaca	6	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49036530	A	A	49036530	3	1	103	1	0	0	0	0	1	0	0	0	3278	797	28	3	1406	3	CEP152	15	49036530	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	485132	49036530	53494862	881	101830											
ALDH1A2	8854	broad.mit.edu	37	chr15	58253451	58253451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctttcgataacttcatcCatcgtcttaaatctcaaaat	3	11	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58253451	A	A	58253451	3	1	103	1	0	0	0	0	1	0	0	0	491	594	21	2	275	2	ALDH1A2	15	58253451	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	9216921	58253451	44277941	882	101831											
LACTB	114294	broad.mit.edu	37	chr15	63414824	63414824	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactgtcggttctttccccTtcggtcttaggatgaggtgg	12	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63414824	C	C	63414824	1	2	103	0	1	0	0	0	0	0	0	0	8669	1624	56	5		5	LACTB	15	63414824	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	5161373	63414824	39116568	883	101832											
RBPMS2	348093	broad.mit.edu	37	chr15	65042499	65042499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtttgaagctcagcagCcggtctgggctgggaggaag	16	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65042499	A	A	65042499	1	1	103	0	1	0	0	0	0	0	0	0	13272	754	26	3		3	RBPMS2	15	65042499	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1627675	65042499	37488893	884	101833											
MAP2K5	5607	broad.mit.edu	37	chr15	67920408	67920408	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgcagccatgaatgcAaggccacgcaaggtggacgg	16	9	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67920408	T	T	67920408	1	4	103	0	1	0	0	0	0	0	0	0	9332	145	5	5		5	MAP2K5	15	67920408	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2877909	67920408	34610984	885	101834											
CORO2B	10391	broad.mit.edu	37	chr15	69007578	69007578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggaaacatccggtactacGagatcagcactgagaagccc	10	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69007578	A	A	69007578	3	1	103	1	0	0	0	0	1	0	0	0	3789	1059	37	4	925	4	CORO2B	15	69007578	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1087170	69007578	33523814	886	101835											
TMEM202	338949	broad.mit.edu	37	chr15	72699376	72699376	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagctgggggtggcggggaAgacagactgaagatgctgat	19	5	0	6			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72699376	G	G	72699376	1	3	103	0	1	0	0	0	0	0	0	0	16250	87	3	5		5	TMEM202	15	72699376	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	3691798	72699376	29832016	887	101836											
NEO1	4756	broad.mit.edu	37	chr15	73541487	73541487	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggaaacaccagtgtctGgcaatggggaaattcagaat	13	7	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73541487	A	A	73541487	3	1	103	1	0	0	0	0	1	0	0	0	10431	1348	47	4	1731	4	NEO1	15	73541487	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	842111	73541487	28989905	888	101837											
GOLGA6C	653641	broad.mit.edu	37	chr15	75557766	75557766	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggaaaatgtcggtggagGtgaggtctgacccttcagcc	15	8	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75557766	A	A	75557766	5	1	103	1	0	0	0	0	0	0	1	0	6623	1275	44	4	794	4	GOLGA6C	15	75557766	Splice_Site	SNP	G	TCGA-38-4632-01A-01D-1753-08	2016279	75557766	26973626	889	101838											
C15orf27	123591	broad.mit.edu	37	chr15	76496577	76496577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtcatccacttccagcCcactgtgcccatgctggagg	10	16	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76496577	A	A	76496577	3	1	103	1	0	0	0	0	1	0	0	0	1801	623	22	2	1555	2	C15orf27	15	76496577	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	938811	76496577	26034815	890	101839											
SH2D7	646892	broad.mit.edu	37	chr15	78390402	78390403	+	Missense_Mutation	DNP	CC	AA	AA													ccaggaggcacagctcgagcCcttcaaagagatgctgactg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	78390403	AA	AA	78390402	3	1	103	1	0	0	0	0	1	0	0	0	14352	623	22	2	408	2	SH2D7	15	78390402	Missense_Mutation	DNP	CC	TCGA-38-4632-01A-01D-1753-08	1893825	78390402	24140990	891	101840											
BNC1	646	broad.mit.edu	37	chr15	83926469	83926469	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacacagatggggtactcatCttccccagggacaaggctcg	12	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83926469	T	T	83926469	3	4	103	1	0	0	0	0	1	0	0	0	1480	913	32	4	278	4	BNC1	15	83926469	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	5536067	83926469	18604923	892	101841											
BNC1	646	broad.mit.edu	37	chr15	83931668	83931668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaacttgaagagccactGccttagaaaaaatgattgcc	8	8	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83931668	T	T	83931668	1	4	103	0	1	0	0	0	0	0	0	0	1480	1334	46	3		3	BNC1	15	83931668	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	5199	83931668	18599724	893	101842											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84611461	84611461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcccctcctgaggagtgccGagatgaaaagccccatgctt	11	13	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84611461	T	T	84611461	3	4	103	1	0	0	0	0	1	0	0	0	276	1058	37	3	2297	3	ADAMTSL3	15	84611461	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	679793	84611461	17919931	894	101843											
AGBL1	123624	broad.mit.edu	37	chr15	87572018	87572018	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaccagaagttacacggcttCaagcatagtaattaatatat	6	7	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87572018	G	G	87572018	1	3	103	0	1	0	0	0	0	0	0	0	375	841	29	4		4	AGBL1	15	87572018	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2960557	87572018	14959374	895	101844											
NTRK3	4916	broad.mit.edu	37	chr15	88678345	88678345	+	Missense_Mutation	SNP	C	A	A													ccctcacctggaaagggctcCttgaggaagtggccattgat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88678345	A	A	88678345	3	1	103	1	0	0	0	0	1	0	0	0	10803	680	24	2	1634	2	NTRK3	15	88678345	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1106327	88678345	13853047	896	101845	443	2									
NTRK3	4916	broad.mit.edu	37	chr15	88678354	88678354	+	Missense_Mutation	SNP	G	T	T													ggaaagggctccttgaggaaGtggccattgatggtctggtt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88678354	T	T	88678354	3	4	103	1	0	0	0	0	1	0	0	0	10803	1020	36	3	1643	3	NTRK3	15	88678354	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	9	88678354	13853038	897	101846	443	2									
AP3S2	10239	broad.mit.edu	37	chr15	90447054	90447054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagccgtaccccggcccCcagctcgagttccatcacct	7	20	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90447054	A	A	90447054	3	1	103	1	0	0	0	0	1	0	0	0	752	623	22	2		2	AP3S2	15	90447054	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1768700	90447054	12084338	898	101847											
LMF1	64788	broad.mit.edu	37	chr16	929612	929612	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtggatgatgcacgcccgCcggccgaggaagaggaagaa	16	11	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	929612	A	A	929612	2	1	103	1	0	0	0	0	0	0	0	1	8919	726	26	3		3	LMF1	16	929612	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08		929612	89425141	899	101848											
TPSAB1	7177	broad.mit.edu	37	chr16	1292330	1292330	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacccaggtggcgactgccCcccacaccttccctgccccg	8	22	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1292330	T	T	1292330	1	4	103	0	1	0	0	0	0	0	0	0	16547	638	22	4		4	TPSAB1	16	1292330	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	362718	1292330	89062423	900	101849											
CCNF	899	broad.mit.edu	37	chr16	2499515	2499515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcggggaaggtgctgacatAggaggaggctgtggggagga	22	4	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2499515	T	T	2499515	1	4	103	0	1	0	0	0	0	0	0	0	2952	435	15	5		5	CCNF	16	2499515	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1207185	2499515	87855238	901	101850											
SRRM2	23524	broad.mit.edu	37	chr16	2813458	2813458	+	Frame_Shift_Del	DEL	A	-	-													ctgggtcctcctcaccagatAccaaagtgaaacctgaaaca							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2813458	-	-	2813458	7	5	103	1	0	1	0	1	0	0	0	0	15287	391	14	0	2967	0	SRRM2	16	2813458	Frame_Shift_Del	DEL	A	TCGA-38-4632-01A-01D-1753-08	313943	2813458	87541295	902	101851											
ZNF205	7755	broad.mit.edu	37	chr16	3169032	3169032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggtgagggacgggcgcGcgcctttgtctgcgggagtg	19	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3169032	A	A	3169032	1	1	103	0	1	0	0	0	0	0	0	0	17890	1102	38	4		4	ZNF205	16	3169032	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	355574	3169032	87185721	903	101852											
ERCC4	2072	broad.mit.edu	37	chr16	14028125	14028125	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattaaaagaaattgaggcAgaaaataaggagagtgaagc	12	2	0	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14028125	T	T	14028125	2	4	103	1	0	0	0	0	0	0	0	1	5257	175	7	5		5	ERCC4	16	14028125	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	10859093	14028125	76326628	904	101853											
MYH11	4629	broad.mit.edu	37	chr16	15838971	15838971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctgggaagggggctgGggcagagcactcactttggt	18	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15838971	T	T	15838971	1	4	103	0	1	0	0	0	0	0	0	0	10125	1247	43	2		2	MYH11	16	15838971	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1810846	15838971	74515782	905	101854											
GPRC5B	51704	broad.mit.edu	37	chr16	19883228	19883228	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaggccgtctcccgcatccTgggctgcgacgtgtcgaagt	14	13	1	0	rs145563587	byFrequency	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19883228	A	A	19883228	3	1	103	1	0	0	0	0	1	0	0	0	6791	1579	55	5	283	5	GPRC5B	16	19883228	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	4044257	19883228	70471525	906	101855											
OTOA	146183	broad.mit.edu	37	chr16	21737885	21737885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcctcccagtgtgtgcCctttctgatcagcctgggga	11	15	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21737885	A	A	21737885	3	1	103	1	0	0	0	0	1	0	0	0	11396	623	22	2	2038	2	OTOA	16	21737885	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1854657	21737885	68616868	907	101856											
PRKCB	5579	broad.mit.edu	37	chr16	23848659	23848659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctggaggctgggcccccCgggctgcctgacatacacct	13	15	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23848659	A	A	23848659	1	1	103	0	1	0	0	0	0	0	0	0	12614	667	23	1		1	PRKCB	16	23848659	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2110774	23848659	66506094	908	101857											
CACNG3	10368	broad.mit.edu	37	chr16	24366154	24366154	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctctccttctctccgcagGagctgtgagggcctccagtg	11	15	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24366154	A	A	24366154	3	1	103	1	0	0	0	0	1	0	0	0	2584	1188	41	4	306	4	CACNG3	16	24366154	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	517495	24366154	65988599	909	101858											
RBBP6	5930	broad.mit.edu	37	chr16	24573096	24573096	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgatttaactgtacttcaGtgaatactgcataacatttt	5	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24573096	A	A	24573096	1	1	103	0	1	0	0	0	0	0	0	0	13211	1044	36	4		4	RBBP6	16	24573096	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	206942	24573096	65781657	910	101859											
SLC5A11	115584	broad.mit.edu	37	chr16	24902456	24902456	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctttccttagggtggctGaagtcggtgcttttttcttc	10	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24902456	A	A	24902456	1	1	103	0	1	0	0	0	0	0	0	0	14777	1305	45	4		4	SLC5A11	16	24902456	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	329360	24902456	65452297	911	101860											
IL4R	3566	broad.mit.edu	37	chr16	27357723	27357723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgtggtttgtaggccgGggctgggctgggtgatgggg	23	5	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27357723	T	T	27357723	1	4	103	0	1	0	0	0	0	0	0	0	7768	1247	43	2		2	IL4R	16	27357723	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2455267	27357723	62997030	912	101861											
GSG1L	146395	broad.mit.edu	37	chr16	27802775	27802775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggccaggaatccgccatGtgtggctggtgtcctgccag	16	12	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27802775	T	T	27802775	3	4	103	1	0	0	0	0	1	0	0	0	6887	1368	48	3	87	3	GSG1L	16	27802775	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	445052	27802775	62551978	913	101862											
TUFM	7284	broad.mit.edu	37	chr16	28856035	28856035	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacctcaagggcacagagaGcagagcctacgatgactggg	13	11	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28856035	A	A	28856035	3	1	103	1	0	0	0	0	1	0	0	0	16897	971	34	4	723	4	TUFM	16	28856035	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1053260	28856035	61498718	914	101863											
CORO1A	11151	broad.mit.edu	37	chr16	30199766	30199766	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagtggctggggggtcggGatgctgggcccctcctcatc	18	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30199766	A	A	30199766	3	1	103	1	0	0	0	0	1	0	0	0	3785	1174	41	4	1184	4	CORO1A	16	30199766	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1343731	30199766	60154987	915	101864											
ZNF423	23090	broad.mit.edu	37	chr16	49670063	49670063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctcaataaactcctcCtcgctctgcaggggcatctt	8	14	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49670063	A	A	49670063	3	1	103	1	0	0	0	0	1	0	0	0	18025	680	24	2	874	2	ZNF423	16	49670063	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	19470297	49670063	40684690	916	101865											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53645031	53645031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctacattagtaccattcTgtatttttaaaaatacctgt	5	7	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53645031	C	C	53645031	1	2	103	0	1	0	0	0	0	0	0	0	13661	1595	55	5		5	RPGRIP1L	16	53645031	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	3974968	53645031	36709722	917	101866											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53686885	53686885	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttggtgccataggcaaTatcctttaattgggctgcaa	10	9	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53686885	G	G	53686885	3	3	103	1	0	0	0	0	1	0	0	0	13661	1406	49	5	2285	5	RPGRIP1L	16	53686885	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	41854	53686885	36667868	918	101867											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53721885	53721885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaattttatacctaaaaaCaaagtaataaaatatgatta	4	3	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53721885	A	A	53721885	1	1	103	0	1	0	0	0	0	0	0	0	13661	493	17	3		3	RPGRIP1L	16	53721885	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	35000	53721885	36632868	919	101868											
IRX5	10265	broad.mit.edu	37	chr16	54966343	54966343	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggagcgcagggaaaagggTgcttcggtcgttccgatggc	19	8	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54966343	G	G	54966343	1	3	103	0	1	0	0	0	0	0	0	0	7917	1711	59	5		5	IRX5	16	54966343	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1244458	54966343	35388410	920	101869											
NLRC5	84166	broad.mit.edu	37	chr16	57077251	57077251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgattctctctaggaCtctgtttccccatctccacc	5	16	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57077251	A	A	57077251	1	1	103	0	1	0	0	0	0	0	0	0	10565	580	20	3		3	NLRC5	16	57077251	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2110908	57077251	33277502	921	101870											
GINS3	64785	broad.mit.edu	37	chr16	58437222	58437222	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagaatgcagacatttcccAgtctctgctgcaggcaagta	10	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58437222	T	T	58437222	3	4	103	1	0	0	0	0	1	0	0	0	6453	188	7	5	534	5	GINS3	16	58437222	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	1359971	58437222	31917531	922	101871											
CDH8	1006	broad.mit.edu	37	chr16	61689281	61689281	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttccccaacggaatgctCttgcctgtgtagatcagagt	9	12	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61689281	A	A	61689281	1	1	103	0	1	0	0	0	0	0	0	0	3146	928	32	3		3	CDH8	16	61689281	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	3252059	61689281	28665472	923	101872											
DUS2L	54920	broad.mit.edu	37	chr16	68104916	68104916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccacggcagcctcttccGtgatggtggcccgagcagcc	13	15	1	1	rs150098325		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68104916	T	T	68104916	3	4	103	1	0	0	0	0	1	0	0	0	4846	1145	40	3	753	3	DUS2L	16	68104916	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	6415635	68104916	22249837	924	101873											
SMPD3	55512	broad.mit.edu	37	chr16	68397359	68397359	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctgtctccaccttagtcAgggtgtgcctcgtccctggc	10	16	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68397359	G	G	68397359	1	3	103	0	1	0	0	0	0	0	0	0	14920	203	7	5		5	SMPD3	16	68397359	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	292443	68397359	21957394	925	101874											
AARS	16	broad.mit.edu	37	chr16	70299365	70299365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagactttaatggaaggaaaCtcatgctcagtctgcagcca	9	9	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70299365	A	A	70299365	1	1	103	0	1	0	0	0	0	0	0	0	19	580	20	3		3	AARS	16	70299365	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1902006	70299365	20055388	926	101875											
HYDIN	54768	broad.mit.edu	37	chr16	70884565	70884565	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcaattgggaacctggttGgggaacaaaacagcagatta	11	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70884565	A	A	70884565	1	1	103	0	1	0	0	0	0	0	0	0	7537	1363	47	4		4	HYDIN	16	70884565	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	585200	70884565	19470188	927	101876											
HYDIN	54768	broad.mit.edu	37	chr16	70975570	70975570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttggctttctcctgggcCttcatggctgcgtaatcctg	10	11	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70975570	A	A	70975570	3	1	103	1	0	0	0	0	1	0	0	0	7537	680	24	2	8719	2	HYDIN	16	70975570	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	91005	70975570	19379183	928	101877											
HYDIN	54768	broad.mit.edu	37	chr16	71007878	71007878	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagtcatggttggaatggTcaccttggcttggagacaga	15	6	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71007878	A	A	71007878	3	1	103	1	0	0	0	0	1	0	0	0	7537	1667	58	5	10494	5	HYDIN	16	71007878	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	32308	71007878	19346875	929	101878											
PMFBP1	83449	broad.mit.edu	37	chr16	72170249	72170249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcttgtgttgaggctccCaaagcaataatggtgggtga	14	6	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72170249	A	A	72170249	1	1	103	0	1	0	0	0	0	0	0	0	12229	609	21	2		2	PMFBP1	16	72170249	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1162371	72170249	18184504	930	101879											
CLEC18B	497190	broad.mit.edu	37	chr16	74447479	74447479	+	Frame_Shift_Del	DEL	G	-	-													aggtgtagcagggcttacccGggggagtaggcacagacaaa					rs149591176	byFrequency	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74447479	-	-	74447479	7	5	103	1	0	1	0	1	0	0	0	0	3535	1103	39	0	855	0	CLEC18B	16	74447479	Frame_Shift_Del	DEL	G	TCGA-38-4632-01A-01D-1753-08	2277230	74447479	15907274	931	101880											
ADAMTS18	170692	broad.mit.edu	37	chr16	77389879	77389879	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcggctgcaggaagaccatGaaaacactccattgtttccg	11	11	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77389879	A	A	77389879	3	1	103	1	0	0	0	0	1	0	0	0	263	1294	45	4	2307	4	ADAMTS18	16	77389879	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2942400	77389879	12964874	932	101881											
CDH13	1012	broad.mit.edu	37	chr16	83813620	83813620	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttgctgataaccctggagGacgtgaatgacaatgccccg	11	11	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83813620	A	A	83813620	3	1	103	1	0	0	0	0	1	0	0	0	3129	1174	41	4	1775	4	CDH13	16	83813620	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	6423741	83813620	6541133	933	101882											
TAF1C	9013	broad.mit.edu	37	chr16	84215065	84215065	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtccctgtagatttgccGcagccttggggagacaggca	15	10	0	2	rs138550395		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84215065	A	A	84215065	3	1	103	1	0	0	0	0	1	0	0	0	15640	1086	38	4	1518	4	TAF1C	16	84215065	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	401445	84215065	6139688	934	101883											
ATP2C2	9914	broad.mit.edu	37	chr16	84449249	84449249	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttgatggagctggtcaagGagcagacacttagctaattg	12	6	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84449249	A	A	84449249	1	1	103	0	1	0	0	0	0	0	0	0	1148	1189	41	4		4	ATP2C2	16	84449249	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	234184	84449249	5905504	935	101884											
CRISPLD2	83716	broad.mit.edu	37	chr16	84914128	84914128	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagaatccattgtccgGcacactgcaaagacgaacct	7	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84914128	C	C	84914128	3	2	103	1	0	0	0	0	1	0	0	0	3915	1203	42	4	1289	4	CRISPLD2	16	84914128	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	464879	84914128	5440625	936	101885											
MTHFSD	64779	broad.mit.edu	37	chr16	86575299	86575299	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagctggccactgccgtgacCcaccttgaaccaggtgattc	11	14	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86575299	G	G	86575299	1	3	103	0	1	0	0	0	0	0	0	0	10027	638	22	4		4	MTHFSD	16	86575299	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1661171	86575299	3779454	937	101886											
FOXC2	2303	broad.mit.edu	37	chr16	86601062	86601062	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccagccccatgggcgtcTattccggccacccggagcag	13	16	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86601062	C	C	86601062	3	2	103	1	0	0	0	0	1	0	0	0	6053	1522	53	5	123	5	FOXC2	16	86601062	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	25763	86601062	3753691	938	101887											
GALNS	2588	broad.mit.edu	37	chr16	88902642	88902642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgaggttggcttccccCgtcttcagattaataggaaa	12	8	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88902642	A	A	88902642	2	1	103	1	0	0	0	0	0	0	0	1	6268	639	23	1		1	GALNS	16	88902642	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	2301580	88902642	1452111	939	101888											
FANCA	2175	broad.mit.edu	37	chr16	89857781	89857781	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccttctgggaagatcaggTattaggtagccgattggcag	15	7	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89857781	C	C	89857781	1	2	103	0	1	0	0	0	0	0	0	0	5719	1653	57	5		5	FANCA	16	89857781	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	955139	89857781	496972	940	101889											
SCARF1	8578	broad.mit.edu	37	chr17	1542237	1542237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctgggggagccagaaaCgggggatattcaggccttcc	16	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1542237	A	A	1542237	1	1	103	0	1	0	0	0	0	0	0	0	13995	551	19	3		3	SCARF1	17	1542237	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08		1542237	79652973	941	101890											
OR3A3	8392	broad.mit.edu	37	chr17	3323761	3323761	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaggcattgaggtgttggAggagtgagggatggcctggg	20	3	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3323761	C	C	3323761	1	2	103	0	1	0	0	0	0	0	0	0	11133	319	11	5		5	OR3A3	17	3323761	5'Flank	SNP	A	TCGA-38-4632-01A-01D-1753-08	1781524	3323761	77871449	942	101891											
TP53	7157	broad.mit.edu	37	chr17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgtagatggccatggCgcggacgcgggtgccgggcg	19	11	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7578455	G	G	7578455	3	3	103	1	0	0	0	0	1	0	0	0	16505	768	27	4	823	4	TP53	17	7578455	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	4254694	7578455	73616755	943	101892											
MYH13	8735	broad.mit.edu	37	chr17	10248473	10248473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagagcaagaaggggagGgcccccaataaggaggagct	15	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10248473	T	T	10248473	1	4	103	0	1	0	0	0	0	0	0	0	10126	1247	43	2		2	MYH13	17	10248473	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2670018	10248473	70946737	944	101893											
MYH13	8735	broad.mit.edu	37	chr17	10267634	10267634	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatcaaagacatctgtaatCaacactcacccggtcatcga	5	12	5	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10267634	A	A	10267634	1	1	103	0	1	0	0	0	0	0	0	0	10126	841	29	3		3	MYH13	17	10267634	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	19161	10267634	70927576	945	101894											
DNAH9	1770	broad.mit.edu	37	chr17	11568095	11568095	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattttgactgttgattacaCcagttctttcatgctattaa	5	7	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11568095	G	G	11568095	1	3	103	0	1	0	0	0	0	0	0	0	4648	522	18	4		4	DNAH9	17	11568095	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1300461	11568095	69627115	946	101895											
DNAH9	1770	broad.mit.edu	37	chr17	11584038	11584038	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacactgaggtttcctttgcAggagctgcctgagaaatgga	12	9	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11584038	G	G	11584038	5	3	103	1	0	0	0	0	0	0	1	0	4648	202	7	5	3649	5	DNAH9	17	11584038	Splice_Site	SNP	A	TCGA-38-4632-01A-01D-1753-08	15943	11584038	69611172	947	101896											
DNAH9	1770	broad.mit.edu	37	chr17	11827025	11827025	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcggttatagatttgggcAtgcccgtgtttgaggggtga	15	5	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11827025	T	T	11827025	1	4	103	0	1	0	0	0	0	0	0	0	4648	232	8	5		5	DNAH9	17	11827025	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	242987	11827025	69368185	948	101897											
MYOCD	93649	broad.mit.edu	37	chr17	12656601	12656601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttctgccctcatcctccGgggcccagggagaagggcac	12	15	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12656601	T	T	12656601	3	4	103	1	0	0	0	0	1	0	0	0	10181	1116	39	1	2034	1	MYOCD	17	12656601	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	829576	12656601	68538609	949	101898											
TNFRSF13B	23495	broad.mit.edu	37	chr17	16875341	16875341	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctactcacagcgctcctcctGgtccacacggctccggccac	8	20	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16875341	A	A	16875341	4	1	103	1	0	0	0	0	0	1	0	0	16410	1357	47	4	852	4	TNFRSF13B	17	16875341	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4218740	16875341	64319869	950	101899											
TOM1L2	146691	broad.mit.edu	37	chr17	17772603	17772603	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagaaatccctctgttatGgcaacaatcttttcaaggga	8	8	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17772603	A	A	17772603	1	1	103	0	1	0	0	0	0	0	0	0	16476	1363	47	4		4	TOM1L2	17	17772603	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	897262	17772603	63422607	951	101900											
CYTSB	92521	broad.mit.edu	37	chr17	20135731	20135731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctccgtgagtctggtgGgcaccagggccgtgcttgct	15	14	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20135731	T	T	20135731	1	4	103	0	1	0	0	0	0	0	0	0	4243	1247	43	2		2	CYTSB	17	20135731	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2363128	20135731	61059479	952	101901											
LGALS9B	284194	broad.mit.edu	37	chr17	20358672	20358672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaggctgggagaacggcaCcgtggagaaggcaggctgaa	18	8	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20358672	A	A	20358672	3	1	103	1	0	0	0	0	1	0	0	0	8821	507	18	3	611	3	LGALS9B	17	20358672	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	222941	20358672	60836538	953	101902											
C17orf103	256302	broad.mit.edu	37	chr17	21146659	21146659	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctccaggtactgcggcagGgggttctccttgacgtactt	13	12	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21146659	A	A	21146659	2	1	103	1	0	0	0	0	0	0	0	1	1864	1219	43	4		4	C17orf103	17	21146659	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	787987	21146659	60048551	954	101903											
NOS2	4843	broad.mit.edu	37	chr17	26093499	26093499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcgttaaaataaaatcgaCagagtatcacccacgaagcc	6	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26093499	A	A	26093499	1	1	103	0	1	0	0	0	0	0	0	0	10638	493	17	3		3	NOS2	17	26093499	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4946840	26093499	55101711	955	101904											
NOS2	4843	broad.mit.edu	37	chr17	26109073	26109073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttggtggagtaacgcacGtgtctgcagatgtgttcaaa	13	6	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26109073	T	T	26109073	3	4	103	1	0	0	0	0	1	0	0	0	10638	1136	40	3	2855	3	NOS2	17	26109073	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	15574	26109073	55086137	956	101905											
EFCAB5	374786	broad.mit.edu	37	chr17	28380882	28380882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgtcagctgcagaacaggGatcactcagagagtcagtaa	11	8	4	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28380882	T	T	28380882	3	4	103	1	0	0	0	0	1	0	0	0	4978	1174	41	3	1948	3	EFCAB5	17	28380882	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2271809	28380882	52814328	957	101906											
BLMH	642	broad.mit.edu	37	chr17	28599581	28599582	+	Frame_Shift_Ins	INS	-	T	T													aaatttcctgcactcacagaINSttcatgtcactgaggcccag							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28599582	T	T	28599581	7	5	103	1	0	1	1	0	0	0	0	0	1452	330	12	0	357	0	BLMH	17	28599581	Frame_Shift_Ins	INS	-	TCGA-38-4632-01A-01D-1753-08	218699	28599581	52595629	958	101907											
MED1	5469	broad.mit.edu	37	chr17	37566045	37566045	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaatgcccagagcttgaaGaatctcgaagaggggtgcca	14	8	1	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37566045	T	T	37566045	3	4	103	1	0	0	0	0	1	0	0	0	9518	942	33	3	2320	3	MED1	17	37566045	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	8966464	37566045	43629165	959	101908											
STARD3	10948	broad.mit.edu	37	chr17	37815267	37815268	+	Intron	DNP	AC	TT	TT													cctccccacactctctccccAccccttgccattgtcatctg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	37815268	TT	TT	37815267	1	4	103	0	1	0	0	0	0	0	0	0	15375	174	6	5		5	STARD3	17	37815267	Intron	DNP	AC	TCGA-38-4632-01A-01D-1753-08	249222	37815267	43379943	960	101909											
ERBB2	2064	broad.mit.edu	37	chr17	37866776	37866776	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttttctcattttggtgggGaggtttgtttctgtaaatgg	13	3	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37866776	A	A	37866776	1	1	103	0	1	0	0	0	0	0	0	0	5248	1189	41	4		4	ERBB2	17	37866776	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	51509	37866776	43328434	961	101910											
KRT31	3881	broad.mit.edu	37	chr17	39553533	39553533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaccgctcccggatgaGgttctccagctccgcgttgt	12	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39553533	T	T	39553533	3	4	103	1	0	0	0	0	1	0	0	0	8538	1000	35	2	1019	2	KRT31	17	39553533	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1686757	39553533	41641677	962	101911											
KCNH4	23415	broad.mit.edu	37	chr17	40312458	40312458	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattgagacgagagatctgtTgaaaacacatcgagttgttt	11	5	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40312458	A	A	40312458	1	1	103	0	1	0	0	0	0	0	0	0	8104	1827	63	5		5	KCNH4	17	40312458	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	758925	40312458	40882752	963	101912											
DBF4B	80174	broad.mit.edu	37	chr17	42818823	42818823	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgcaccataccaggtGggtctttctggttcctgagt	11	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42818823	A	A	42818823	1	1	103	0	1	0	0	0	0	0	0	0	4282	1363	47	4		4	DBF4B	17	42818823	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2506365	42818823	38376387	964	101913											
FMNL1	752	broad.mit.edu	37	chr17	43323889	43323889	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgatcaagacggtgcccTtcacggcccgcaccggcaag	12	15	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43323889	G	G	43323889	3	3	103	1	0	0	0	0	1	0	0	0	6009	1609	56	5	3331	5	FMNL1	17	43323889	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	505066	43323889	37871321	965	101914											
GOSR2	9570	broad.mit.edu	37	chr17	45096789	45096789	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctccaaccacggaggagaCctcaactcagcctccagacc	7	17	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45096789	T	T	45096789	1	4	103	0	1	0	0	0	0	0	0	0	6642	522	18	4		4	GOSR2	17	45096789	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1772900	45096789	36098421	966	101915											
C17orf57	124989	broad.mit.edu	37	chr17	45502543	45502543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgtgagccaccgcgccCggccctccggttgacaatct	12	17	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45502543	A	A	45502543	1	1	103	0	1	0	0	0	0	0	0	0	1881	667	23	1		1	C17orf57	17	45502543	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	405754	45502543	35692667	967	101916											
KPNB1	3837	broad.mit.edu	37	chr17	45748181	45748181	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaactcatagttcagaagctCctagagactacagacaggta	9	9	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45748181	T	T	45748181	2	4	103	1	0	0	0	0	0	0	0	1	8506	842	30	4		4	KPNB1	17	45748181	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	245638	45748181	35447029	968	101917											
ITGA3	3675	broad.mit.edu	37	chr17	48166490	48166490	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtgacttctttaagcGgacccgctattatcagatca	8	11	3	2	rs139083066	byFrequency	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48166490	T	T	48166490	1	4	103	0	1	0	0	0	0	0	0	0	7947	1116	39	1		1	ITGA3	17	48166490	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	2418309	48166490	33028720	969	101918											
MPO	4353	broad.mit.edu	37	chr17	56355387	56355387	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accatgctggcgtccacgaaGgaagtgagcgcgttgatctg	14	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56355387	A	A	56355387	2	1	103	1	0	0	0	0	0	0	0	1	9826	987	35	4		4	MPO	17	56355387	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	8188897	56355387	24839823	970	101919											
C17orf71	55181	broad.mit.edu	37	chr17	57289749	57289749	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgtgctatatcacaatAgccgagctcgatctactggt	9	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57289749	C	C	57289749	3	2	103	1	0	0	0	0	1	0	0	0	1894	420	15	5	1813	5	C17orf71	17	57289749	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	934362	57289749	23905461	971	101920											
RNFT1	51136	broad.mit.edu	37	chr17	58037548	58037548	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaaagataaacaatttTataatgttactttgattttg	5	4	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58037548	C	C	58037548	1	2	103	0	1	0	0	0	0	0	0	0	13612	1769	61	5		5	RNFT1	17	58037548	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	747799	58037548	23157662	972	101921											
DDX42	11325	broad.mit.edu	37	chr17	61890703	61890703	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcgggtgagaaaggtgtGgcctataccctactcactcc	12	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61890703	T	T	61890703	2	4	103	1	0	0	0	0	0	0	0	1	4395	1335	47	2		2	DDX42	17	61890703	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	3853155	61890703	19304507	973	101922											
SCN4A	6329	broad.mit.edu	37	chr17	62049725	62049725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatatgcatggatgagcaCcttgatggccccgcgcctga	13	11	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62049725	A	A	62049725	3	1	103	1	0	0	0	0	1	0	0	0	14033	507	18	3	5223	3	SCN4A	17	62049725	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	159022	62049725	19145485	974	101923											
ABCA8	10351	broad.mit.edu	37	chr17	66914177	66914177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggatacttaacagaaaCcagtgattacccgccaggat	8	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66914177	A	A	66914177	1	1	103	0	1	0	0	0	0	0	0	0	38	522	18	3		3	ABCA8	17	66914177	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4864452	66914177	14281033	975	101924											
ABCA8	10351	broad.mit.edu	37	chr17	66915347	66915347	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtccaacaattgtacaatGatttgcgcacaaataattta	5	7	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66915347	T	T	66915347	1	4	103	0	1	0	0	0	0	0	0	0	38	1305	45	3		3	ABCA8	17	66915347	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1170	66915347	14279863	976	101925											
CD300C	10871	broad.mit.edu	37	chr17	72537713	72537713	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgttgcagcacagggccttGatggacagcagatgctactg	13	10	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72537713	A	A	72537713	1	1	103	0	1	0	0	0	0	0	0	0	3027	1305	45	4		4	CD300C	17	72537713	3'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	5622366	72537713	8657497	977	101926											
KIAA0195	9772	broad.mit.edu	37	chr17	73494186	73494186	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactaagagcccgttgaatAcgtggaagagctaggagcag	13	7	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73494186	G	G	73494186	1	3	103	0	1	0	0	0	0	0	0	0	8230	406	14	5		5	KIAA0195	17	73494186	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	956473	73494186	7701024	978	101927											
C17orf95	124512	broad.mit.edu	37	chr17	74729667	74729667	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgtgtccacattcctcttGagtcttttgatgcagacaaa	7	9	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74729667	T	T	74729667	4	4	103	1	0	0	0	0	0	1	0	0	1909	1291	45	3	486	3	C17orf95	17	74729667	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1235481	74729667	6465543	979	101928											
USP36	57602	broad.mit.edu	37	chr17	76794540	76794540	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctggcagcctttgctgggtGagtcacagaccagaagttcc	13	11	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76794540	C	C	76794540	3	2	103	1	0	0	0	0	1	0	0	0	17194	1290	45	4	41	4	USP36	17	76794540	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2064873	76794540	4400670	980	101929											
ENGASE	64772	broad.mit.edu	37	chr17	77079624	77079624	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgctccttgcctttcgtCacgtccttctgcctgggcat	8	15	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77079624	T	T	77079624	2	4	103	1	0	0	0	0	0	0	0	1	5160	813	29	4		4	ENGASE	17	77079624	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	285084	77079624	4115586	981	101930											
AZI1	22994	broad.mit.edu	37	chr17	79164929	79164929	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactccagcccagtcacacaCgggtccttgcgcctcagctc	8	19	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79164929	T	T	79164929	1	4	103	0	1	0	0	0	0	0	0	0	1245	551	19	4		4	AZI1	17	79164929	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2085305	79164929	2030281	982	101931											
ZFP161	7541	broad.mit.edu	37	chr18	5290937	5290937	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caactgttctgtctcgctctGgatggcactgggggtaacct	12	11	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5290937	C	C	5290937	3	2	103	1	0	0	0	0	1	0	0	0	17766	1357	47	4	83	4	ZFP161	18	5290937	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08		5290937	72786311	983	101932											
ARHGAP28	79822	broad.mit.edu	37	chr18	6895014	6895014	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttgacattttcaatgtgGcacataaaggaatggtagag	10	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6895014	T	T	6895014	1	4	103	0	1	0	0	0	0	0	0	0	879	1218	42	3		3	ARHGAP28	18	6895014	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1604077	6895014	71182234	984	101933											
MC5R	4161	broad.mit.edu	37	chr18	13825819	13825819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacctgaatgccacagagGgcaacctttcaggacccaat	8	13	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13825819	T	T	13825819	3	4	103	1	0	0	0	0	1	0	0	0	9460	1232	43	2	57	2	MC5R	18	13825819	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	6930805	13825819	64251429	985	101934											
POTEC	388468	broad.mit.edu	37	chr18	14542897	14542897	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggagttgtcatggtctccAgaagtgcccacgttgctcgt	12	10	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14542897	G	G	14542897	2	3	103	1	0	0	0	0	0	0	0	1	12358	175	7	5		5	POTEC	18	14542897	Silent	SNP	A	TCGA-38-4632-01A-01D-1753-08	717078	14542897	63534351	986	101935											
ROCK1	6093	broad.mit.edu	37	chr18	18622550	18622550	+	Frame_Shift_Del	DEL	C	-	-													aagcatttcgtataaaaataCcccaaccgaccaccagtcac							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18622550	-	-	18622550	7	5	103	1	0	1	0	1	0	0	0	0	13628	507	18	0	3376	0	ROCK1	18	18622550	Frame_Shift_Del	DEL	C	TCGA-38-4632-01A-01D-1753-08	4079653	18622550	59454698	987	101936											
AQP4	361	broad.mit.edu	37	chr18	24442598	24442598	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcatcagaagccactacAcccaggtttatgaatttagg	8	10	2	2	rs35940398		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24442598	T	T	24442598	1	4	103	0	1	0	0	0	0	0	0	0	830	174	6	5		5	AQP4	18	24442598	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	5820048	24442598	53634650	988	101937											
FHOD3	80206	broad.mit.edu	37	chr18	34298531	34298531	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaccatccgtttgttctgGaatgaagttcggccttttga	10	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34298531	A	A	34298531	4	1	103	1	0	0	0	0	0	1	0	0	5940	1183	41	4	2807	4	FHOD3	18	34298531	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	9855933	34298531	43778717	989	101938											
KIAA0427	9811	broad.mit.edu	37	chr18	46385872	46385872	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacgctaacagctggaaccCtctgacgccccccatcacgc	7	20	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46385872	G	G	46385872	3	3	103	1	0	0	0	0	1	0	0	0	8246	681	24	4	1787	4	KIAA0427	18	46385872	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	12087341	46385872	31691376	990	101939											
ACAA2	10449	broad.mit.edu	37	chr18	47329193	47329193	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcctccgtaagctccaaagGgcgttcgcttagcagcaact	11	13	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47329193	C	C	47329193	3	2	103	1	0	0	0	0	1	0	0	0	105	1232	43	4	1182	4	ACAA2	18	47329193	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	943321	47329193	30748055	991	101940											
CCDC102B	79839	broad.mit.edu	37	chr18	66504245	66504245	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgggagcttgaagaagtcaAggccagagctgctcagatgg	16	8	2	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66504245	T	T	66504245	3	4	103	1	0	0	0	0	1	0	0	0	2763	72	3	5	247	5	CCDC102B	18	66504245	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	19175052	66504245	11573003	992	101941											
ATP9B	374868	broad.mit.edu	37	chr18	77105355	77105355	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgctcccatggttttgcActttctacattacacaaatc	4	12	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77105355	G	G	77105355	1	3	103	0	1	0	0	0	0	0	0	0	1203	174	6	5		5	ATP9B	18	77105355	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	10601110	77105355	971893	993	101942											
BSG	682	broad.mit.edu	37	chr19	579483	579483	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccactctgctgaccgcgtCtcgccgggccttgcagccgg	12	18	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	579483	T	T	579483	1	4	103	0	1	0	0	0	0	0	0	0	1538	928	32	4		4	BSG	19	579483	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08		579483	58549500	994	101943											
ATP8B3	148229	broad.mit.edu	37	chr19	1785468	1785468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgaggaccttgcccacCtccatggtgatggacagcag	14	11	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1785468	A	A	1785468	3	1	103	1	0	0	0	0	1	0	0	0	1200	695	24	2	525	2	ATP8B3	19	1785468	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1205985	1785468	57343515	995	101944											
AP3D1	8943	broad.mit.edu	37	chr19	2109914	2109914	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaggagctgcagctgaagTgcagcctgaagtccagcttc	13	10	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2109914	A	A	2109914	3	1	103	1	0	0	0	0	1	0	0	0	748	1696	59	5	355	5	AP3D1	19	2109914	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	324446	2109914	57019069	996	101945											
CREB3L3	84699	broad.mit.edu	37	chr19	4157097	4157097	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccgaaggcagtgatagtGgcatctccgaagacctcccc	10	16	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4157097	A	A	4157097	3	1	103	1	0	0	0	0	1	0	0	0	3890	1348	47	4	272	4	CREB3L3	19	4157097	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2047183	4157097	54971886	997	101946											
STAP2	55620	broad.mit.edu	37	chr19	4325419	4325419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttctcatagtcaacagctGggccatctccaatgggggtc	12	11	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4325419	A	A	4325419	3	1	103	1	0	0	0	0	1	0	0	0	15371	1348	47	4	412	4	STAP2	19	4325419	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	168322	4325419	54803564	998	101947											
TMEM146	257062	broad.mit.edu	37	chr19	5733834	5733834	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaatgtttgaaaagatgcTctcattgatatcatccatat	5	7	3	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5733834	C	C	5733834	1	2	103	0	1	0	0	0	0	0	0	0	16183	1566	54	5		5	TMEM146	19	5733834	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1408415	5733834	53395149	999	101948											
EMR1	2015	broad.mit.edu	37	chr19	6921732	6921732	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttttttttagccaaagcaGaagtttgagaggcccatctg	10	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6921732	T	T	6921732	3	4	103	1	0	0	0	0	1	0	0	0	5146	933	33	3	1683	3	EMR1	19	6921732	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	1187898	6921732	52207251	1000	101949											
CD209	30835	broad.mit.edu	37	chr19	7809059	7809059	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttagatctgaaagtcccAtccaggtgaagcggttactt	10	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7809059	G	G	7809059	3	3	103	1	0	0	0	0	1	0	0	0	3014	217	8	5	275	5	CD209	19	7809059	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	887327	7809059	51319924	1001	101950											
HNRNPM	4670	broad.mit.edu	37	chr19	8527445	8527445	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catacgtggagctcttaatgGacgctgaaggaaagtcaagg	13	7	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8527445	A	A	8527445	3	1	103	1	0	0	0	0	1	0	0	0	7338	1174	41	4	326	4	HNRNPM	19	8527445	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	718386	8527445	50601538	1002	101951											
MUC16	94025	broad.mit.edu	37	chr19	9038377	9038377	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatcacaggtttgaatactCactgctggtggcaggggtcc	12	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9038377	G	G	9038377	1	3	103	0	1	0	0	0	0	0	0	0	10067	841	29	4		4	MUC16	19	9038377	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	510932	9038377	50090606	1003	101952											
OR7D4	125958	broad.mit.edu	37	chr19	9324917	9324917	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgccgtggccacataCaagacaatgttattgaggag	12	8	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9324917	T	T	9324917	2	4	103	1	0	0	0	0	0	0	0	1	11314	477	17	4		4	OR7D4	19	9324917	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	286540	9324917	49804066	1004	101953											
ZNF121	7675	broad.mit.edu	37	chr19	9677032	9677032	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttacattcaaagggcttctCctctgtgtgagttttaaaat	7	8	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9677032	A	A	9677032	4	1	103	1	0	0	0	0	0	1	0	0	17845	864	30	3	419	3	ZNF121	19	9677032	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	352115	9677032	49451951	1005	101954											
ELOF1	84337	broad.mit.edu	37	chr19	11664687	11664687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctgcatcttctcaccCcacagaaatcactaggtggc	7	16	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11664687	A	A	11664687	1	1	103	0	1	0	0	0	0	0	0	0	5114	638	22	2		2	ELOF1	19	11664687	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1987655	11664687	47464296	1006	101955											
ZNF69	7620	broad.mit.edu	37	chr19	12016828	12016828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctataaatgcaagcaatGtgggaaagccttcagagctg	10	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12016828	T	T	12016828	1	4	103	0	1	0	0	0	0	0	0	0	18222	1392	48	3		3	ZNF69	19	12016828	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	352141	12016828	47112155	1007	101956											
ZNF490	57474	broad.mit.edu	37	chr19	12691647	12691647	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacattcgtaagttttctcGccagtgtgaactctttcgtg	8	9	2	1	rs76668661	byFrequency;by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12691647	C	C	12691647	2	2	103	1	0	0	0	0	0	0	0	1	18068	1074	38	4		4	ZNF490	19	12691647	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	674819	12691647	46437336	1008	101957											
OR7C2	26658	broad.mit.edu	37	chr19	15052430	15052430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccatcatcggaaacctgCtcatcatcctgaccatcagt	5	14	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15052430	A	A	15052430	3	1	103	1	0	0	0	0	1	0	0	0	11312	797	28	3	132	3	OR7C2	19	15052430	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2360783	15052430	44076553	1009	101958											
NOTCH3	4854	broad.mit.edu	37	chr19	15281392	15281392	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggaagcagagggcggggcTtcagccgagggcggggcttt	20	9	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15281392	A	A	15281392	1	1	103	0	1	0	0	0	0	0	0	0	10645	1624	56	5		5	NOTCH3	19	15281392	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	228962	15281392	43847591	1010	101959											
CYP4F22	126410	broad.mit.edu	37	chr19	15658844	15658844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtttt	19	0	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15658844	T	T	15658844	1	4	103	0	1	0	0	0	0	0	0	0	4222	1392	48	3		3	CYP4F22	19	15658844	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	377452	15658844	43470139	1011	101960											
UNC13A	23025	broad.mit.edu	37	chr19	17763418	17763418	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttcaaatcttcctcccacCgctcacagtttcattactta	4	14	4	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17763418	G	G	17763418	1	3	103	0	1	0	0	0	0	0	0	0	17110	667	23	4		4	UNC13A	19	17763418	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	2104574	17763418	41365565	1012	101961											
TMEM59L	25789	broad.mit.edu	37	chr19	18729130	18729130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggggtgggactggaggtaCgggtctccctggtcccggcc	20	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18729130	A	A	18729130	1	1	103	0	1	0	0	0	0	0	0	0	16309	551	19	3		3	TMEM59L	19	18729130	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	965712	18729130	40399853	1013	101962											
GMIP	51291	broad.mit.edu	37	chr19	19749277	19749277	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttctcaatctcagtccgTttggcggcgaggggctggca	13	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19749277	C	C	19749277	2	2	103	1	0	0	0	0	0	0	0	1	6555	1722	60	5		5	GMIP	19	19749277	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	1020147	19749277	39379706	1014	101963											
POP4	10775	broad.mit.edu	37	chr19	30106349	30106349	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggacactccctaaatgtcCacctttcagtgaagagatag	8	11	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30106349	T	T	30106349	1	4	103	0	1	0	0	0	0	0	0	0	12347	609	21	4		4	POP4	19	30106349	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	10357072	30106349	29022634	1015	101964											
ZNF829	374899	broad.mit.edu	37	chr19	37382996	37382996	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtttctcaccagtgtgaaTcctctgatgttgagaaaaat	10	7	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37382996	A	A	37382996	3	1	103	1	0	0	0	0	1	0	0	0	18311	1435	50	5	605	5	ZNF829	19	37382996	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	7276647	37382996	21745987	1016	101965											
RYR1	6261	broad.mit.edu	37	chr19	38960040	38960040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctttgccatctgtggcCtccaggaaggcttcgagcca	12	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38960040	A	A	38960040	3	1	103	1	0	0	0	0	1	0	0	0	13879	681	24	2	3758	2	RYR1	19	38960040	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1577044	38960040	20168943	1017	101966											
PAPL	390928	broad.mit.edu	37	chr19	39591613	39591613	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaataagaaccgggcagccCggccgtggatcatcactatg	11	13	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39591613	A	A	39591613	2	1	103	1	0	0	0	0	0	0	0	1	11521	643	23	1		1	PAPL	19	39591613	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	631573	39591613	19537370	1018	101967											
IL28B	282617	broad.mit.edu	37	chr19	39734553	39734553	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgaggctggatctgtgGgcagaggagggcggtgtgtg	23	5	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39734553	T	T	39734553	1	4	103	0	1	0	0	0	0	0	0	0	7753	1247	43	2		2	IL28B	19	39734553	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	142940	39734553	19394430	1019	101968											
FCGBP	8857	broad.mit.edu	37	chr19	40412002	40412002	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtggcaaagggaatcacatCcggggccagggtagaaggtc	16	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40412002	G	G	40412002	3	3	103	1	0	0	0	0	1	0	0	0	5835	855	30	4	12711	4	FCGBP	19	40412002	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	677449	40412002	18716981	1020	101969											
SPTBN4	57731	broad.mit.edu	37	chr19	41010047	41010047	+	Intron	DEL	C	-	-													ggaggagatgcaggtgccggCgggggggcggggatgcgggt					rs843779	by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41010047	-	-	41010047	6	5	103	0	1	1	0	1	0	0	0	0	15239	783	27	0		0	SPTBN4	19	41010047	Intron	DEL	C	TCGA-38-4632-01A-01D-1753-08	598045	41010047	18118936	1021	101970											
LTBP4	8425	broad.mit.edu	37	chr19	41113371	41113371	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacatcactaaacagatctgCtgctgcagccgcgtaggcaa	9	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41113371	G	G	41113371	3	3	103	1	0	0	0	0	1	0	0	0	9163	805	28	4	1624	4	LTBP4	19	41113371	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	103324	41113371	18015612	1022	101971											
CYP2A13	1553	broad.mit.edu	37	chr19	41594960	41594960	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagttcagcgggcgaggcGagcaggccaccttcgactgg	17	11	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41594960	T	T	41594960	4	4	103	1	0	0	0	0	0	1	0	0	4194	1059	37	3	313	3	CYP2A13	19	41594960	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	481589	41594960	17534023	1023	101972											
PSG6	5675	broad.mit.edu	37	chr19	43411745	43411745	+	Missense_Mutation	SNP	A	G	G													cacagaggacattcagggtgActgggttactgcggatgcca							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43411745	G	G	43411745	3	3	103	1	0	0	0	0	1	0	0	0	12765	275	10	5	390	5	PSG6	19	43411745	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	1816785	43411745	15717238	1024	101973	444	2									
PSG6	5675	broad.mit.edu	37	chr19	43411752	43411752	+	Missense_Mutation	SNP	T	C	C													gacattcagggtgactgggtTactgcggatgccaccatatc					rs144522626	byFrequency	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43411752	C	C	43411752	3	2	103	1	0	0	0	0	1	0	0	0	12765	1754	61	5	397	5	PSG6	19	43411752	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	7	43411752	15717231	1025	101974	444	2									
PSG6	5675	broad.mit.edu	37	chr19	43430515	43430515	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accggagagagactgagaggActggcctctggtcgtttgga	16	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43430515	C	C	43430515	1	2	103	0	1	0	0	0	0	0	0	0	12765	290	10	5		5	PSG6	19	43430515	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	18763	43430515	15698468	1026	101975											
PSG7	5676	broad.mit.edu	37	chr19	43430607	43430607	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagaggacattcagggtgActgggtcactgcggatgcca	14	10	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43430607	G	G	43430607	3	3	103	1	0	0	0	0	1	0	0	0	12766	275	10	5	300	5	PSG7	19	43430607	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	92	43430607	15698376	1027	101976											
ZNF229	7772	broad.mit.edu	37	chr19	44933335	44933335	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttgtagggtttctctcCtgtgtgcagtctctgatgca	11	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44933335	A	A	44933335	4	1	103	1	0	0	0	0	0	1	0	0	17908	690	24	2	860	2	ZNF229	19	44933335	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1502728	44933335	14195648	1028	101977											
FOSB	2354	broad.mit.edu	37	chr19	45976290	45976290	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactctttagacacacaaaaCaaacaaacacatgggggaga	7	9	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45976290	G	G	45976290	1	3	103	0	1	0	0	0	0	0	0	0	6044	493	17	4		4	FOSB	19	45976290	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	1042955	45976290	13152693	1029	101978											
C19orf41	126123	broad.mit.edu	37	chr19	50661573	50661573	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtgatcctctggcaatGtaaacagtccaacacctctt	9	11	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50661573	T	T	50661573	3	4	103	1	0	0	0	0	1	0	0	0	1943	1377	48	3	229	3	C19orf41	19	50661573	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4685283	50661573	8467410	1030	101979											
MYH14	79784	broad.mit.edu	37	chr19	50804968	50804968	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcgcagtttctcagccaaGgcagagagcgggcggcagca	16	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50804968	A	A	50804968	2	1	103	1	0	0	0	0	0	0	0	1	10127	991	35	4		4	MYH14	19	50804968	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	143395	50804968	8324015	1031	101980											
MYBPC2	4606	broad.mit.edu	37	chr19	50946953	50946953	+	Intron	DEL	C	-	-													tgaaacgactgacctcctgtCcccctgccccacagaacctc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50946953	-	-	50946953	6	5	103	0	1	1	0	1	0	0	0	0	10106	870	30	0		0	MYBPC2	19	50946953	Intron	DEL	C	TCGA-38-4632-01A-01D-1753-08	141985	50946953	8182030	1032	101981											
KLK1	3816	broad.mit.edu	37	chr19	51327105	51327105	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagagccccacccctgcccTgctggcacccagatgttggc	10	18	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51327105	C	C	51327105	1	2	103	0	1	0	0	0	0	0	0	0	8468	1595	55	5		5	KLK1	19	51327105	5'Flank	SNP	T	TCGA-38-4632-01A-01D-1753-08	380152	51327105	7801878	1033	101982											
NLRP12	91662	broad.mit.edu	37	chr19	54301630	54301630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcaccacagaaagacCctcacaggcggcagagccca	11	15	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54301630	A	A	54301630	3	1	103	1	0	0	0	0	1	0	0	0	10569	623	22	2	403	2	NLRP12	19	54301630	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2974525	54301630	4827353	1034	101983											
VSTM1	284415	broad.mit.edu	37	chr19	54544207	54544207	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctttagtggccagggctgTcttcttgctacactttcagt	9	11	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54544207	C	C	54544207	1	2	103	0	1	0	0	0	0	0	0	0	17355	1682	58	5		5	VSTM1	19	54544207	3'UTR	SNP	T	TCGA-38-4632-01A-01D-1753-08	242577	54544207	4584776	1035	101984											
NLRP7	199713	broad.mit.edu	37	chr19	55447801	55447801	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggtgacgtttttaatccTagggaaaagcagaagagatt	13	4	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55447801	C	C	55447801	5	2	103	1	0	0	0	0	0	0	1	0	10577	1536	53	5	1009	5	NLRP7	19	55447801	Splice_Site	SNP	T	TCGA-38-4632-01A-01D-1753-08	903594	55447801	3681182	1036	101985											
NLRP13	126204	broad.mit.edu	37	chr19	56422946	56422946	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcaagttagagctgctccaGaccatttggtcggaaataag	10	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56422946	T	T	56422946	1	4	103	0	1	0	0	0	0	0	0	0	10570	957	33	3		3	NLRP13	19	56422946	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	975145	56422946	2706037	1037	101986											
PEG3	5178	broad.mit.edu	37	chr19	57327451	57327451	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacactgtgacttttctgagCttccacagaggctaagctat	8	10	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57327451	T	T	57327451	3	4	103	1	0	0	0	0	1	0	0	0	11814	797	28	4	2411	4	PEG3	19	57327451	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	904505	57327451	1801532	1038	101987											
DUXA	503835	broad.mit.edu	37	chr19	57670500	57670500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctccgccgtagagaagCtctgctggggaacagaacta	13	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57670500	A	A	57670500	1	1	103	0	1	0	0	0	0	0	0	0	4874	812	28	3		3	DUXA	19	57670500	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	343049	57670500	1458483	1039	101988											
ZNF304	57343	broad.mit.edu	37	chr19	57867648	57867648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttttaccagcaccagaaGcaacataatggagagaattg	8	8	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57867648	T	T	57867648	3	4	103	1	0	0	0	0	1	0	0	0	17959	962	34	3	421	3	ZNF304	19	57867648	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	197148	57867648	1261335	1040	101989											
ZNF547	284306	broad.mit.edu	37	chr19	57888789	57888789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttgtgaagaaccacagaGttcacatggcagggaagacc	11	9	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57888789	T	T	57888789	3	4	103	1	0	0	0	0	1	0	0	0	18106	1029	36	3	455	3	ZNF547	19	57888789	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	21141	57888789	1240194	1041	101990											
ZNF416	55659	broad.mit.edu	37	chr19	58089425	58089425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaacactctccactcacCtgtgtaaagcccataagttt	5	14	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58089425	A	A	58089425	3	1	103	1	0	0	0	0	1	0	0	0	18020	695	24	2	1721	2	ZNF416	19	58089425	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	200636	58089425	1039558	1042	101991											
ZNF211	10520	broad.mit.edu	37	chr19	58145268	58145268	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcactaaggaccgaggcGcacaggttagacagtcgacc	13	12	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58145268	A	A	58145268	1	1	103	0	1	0	0	0	0	0	0	0	17893	1102	38	4		4	ZNF211	19	58145268	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	55843	58145268	983715	1043	101992											
ZBTB45	84878	broad.mit.edu	37	chr19	59027778	59027778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccgagtggatgaacatGtgcttggtgtagtttttccg	12	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59027778	T	T	59027778	3	4	103	1	0	0	0	0	1	0	0	0	17672	1368	48	3	280	3	ZBTB45	19	59027778	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	882510	59027778	101205	1044	101993											
TRIM28	10155	broad.mit.edu	37	chr19	59059178	59059178	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatccgccaggtgtctgacGtacagaagcgtgtgcaagtg	14	9	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59059178	A	A	59059178	3	1	103	1	0	0	0	0	1	0	0	0	16626	1145	40	4	881	4	TRIM28	19	59059178	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	31400	59059178	69805	1045	101994											
UBE2M	9040	broad.mit.edu	37	chr19	59067459	59067459	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtatgcgccaaccctaTttcaggcagcgctcaaagta	11	11	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59067459	A	A	59067459	3	1	103	1	0	0	0	0	1	0	0	0	16991	1490	52	5	6	5	UBE2M	19	59067459	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	8281	59067459	61524	1046	101995											
TGM6	343641	broad.mit.edu	37	chr20	2411780	2411780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagagattctggacacccCaggaaccagcccacagacta	10	13	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2411780	A	A	2411780	1	1	103	0	1	0	0	0	0	0	0	0	15957	609	21	2		2	TGM6	20	2411780	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08		2411780	60613740	1047	101996											
VPS16	64601	broad.mit.edu	37	chr20	2844701	2844701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgctgcacgagcctatgGttgtggccgcacggagctgg	15	11	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2844701	T	T	2844701	3	4	103	1	0	0	0	0	1	0	0	0	17320	1261	44	3	1645	3	VPS16	20	2844701	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	432921	2844701	60180819	1048	101997											
SLC4A11	83959	broad.mit.edu	37	chr20	3214271	3214271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgccgcttctgtagggcCttcatggtacagctggcagg	14	11	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3214271	A	A	3214271	3	1	103	1	0	0	0	0	1	0	0	0	14766	680	24	2	2065	2	SLC4A11	20	3214271	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	369570	3214271	59811249	1049	101998											
ADAM33	80332	broad.mit.edu	37	chr20	3653196	3653196	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctcaccaggcagcgcacGcagcagtccccgtgggcgca	13	18	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3653196	C	C	3653196	3	2	103	1	0	0	0	0	1	0	0	0	250	1079	38	4	1092	4	ADAM33	20	3653196	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	438925	3653196	59372324	1050	101999											
RRBP1	6238	broad.mit.edu	37	chr20	17622340	17622340	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagccagctacgttccagGcaggccccagcatctcggag	12	15	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17622340	A	A	17622340	1	1	103	0	1	0	0	0	0	0	0	0	13789	1218	42	4		4	RRBP1	20	17622340	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	13969144	17622340	45403180	1051	102000											
SEC23B	10483	broad.mit.edu	37	chr20	18485244	18485244	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggaaaccccgttgctccCtttcccctggctggcagcgc	12	17	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18485244	A	A	18485244	1	1	103	0	1	0	0	0	0	0	0	0	14105	696	24	2		2	SEC23B	20	18485244	5'Flank	SNP	C	TCGA-38-4632-01A-01D-1753-08	862904	18485244	44540276	1052	102001											
CSTL1	128817	broad.mit.edu	37	chr20	23425464	23425464	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggataaactatttccagctCtggaacaattcctgtctgga	8	9	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23425464	A	A	23425464	2	1	103	1	0	0	0	0	0	0	0	1	4021	900	32	3		3	CSTL1	20	23425464	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	4940220	23425464	39600056	1053	102002											
SUN5	140732	broad.mit.edu	37	chr20	31577467	31577467	+	Frame_Shift_Del	DEL	C	-	-													ctggcttttcgatgtaatctCcgtgtatcatcttcattatt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31577467	-	-	31577467	7	5	103	1	0	1	0	1	0	0	0	0	15512	855	30	0	587	0	SUN5	20	31577467	Frame_Shift_Del	DEL	C	TCGA-38-4632-01A-01D-1753-08	8152003	31577467	31448053	1054	102003											
C20orf70	140683	broad.mit.edu	37	chr20	31763433	31763433	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccctaatttcagctctaGtcctctacctaagaggaggc	8	13	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31763433	A	A	31763433	1	1	103	0	1	0	0	0	0	0	0	0	2138	1044	36	4		4	C20orf70	20	31763433	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	185966	31763433	31262087	1055	102004											
DLGAP4	22839	broad.mit.edu	37	chr20	35060432	35060433	+	Missense_Mutation	DNP	CC	AA	AA													aaccggctgcccgccaacctCctggaccagtttgagaagca					rs144799810		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	35060433	AA	AA	35060432	3	1	103	1	0	0	0	0	1	0	0	0	4602	842	30	3	314	3	DLGAP4	20	35060432	Missense_Mutation	DNP	CC	TCGA-38-4632-01A-01D-1753-08	3296999	35060432	27965088	1056	102005											
SLC32A1	140679	broad.mit.edu	37	chr20	37356308	37356308	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcgcttcccaacgctgGgcggccgagtggtgaacgta	14	15	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37356308	A	A	37356308	3	1	103	1	0	0	0	0	1	0	0	0	14679	1232	43	4	610	4	SLC32A1	20	37356308	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2295876	37356308	25669212	1057	102006											
ACTR5	79913	broad.mit.edu	37	chr20	37384668	37384668	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctcgaggtggatgtggtaGacagcaagccagaggtaact	14	8	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37384668	C	C	37384668	3	2	103	1	0	0	0	0	1	0	0	0	215	942	33	4	1180	4	ACTR5	20	37384668	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	28360	37384668	25640852	1058	102007											
PTPRT	11122	broad.mit.edu	37	chr20	40789982	40789983	+	Intron	DNP	GG	TT	TT													aggaagtttccccacaggctGgtctcttacctcgtattcct							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	40789983	TT	TT	40789982	1	4	103	0	1	0	0	0	0	0	0	0	12920	1363	47	2		2	PTPRT	20	40789982	Intron	DNP	GG	TCGA-38-4632-01A-01D-1753-08	3405314	40789982	22235538	1059	102008											
PTPRT	11122	broad.mit.edu	37	chr20	40979267	40979267	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtgaagaaccatcctcaCctgacaggagctccccggga	10	14	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40979267	A	A	40979267	5	1	103	1	0	0	0	0	0	0	1	0	12920	521	18	3	2604	3	PTPRT	20	40979267	Splice_Site	SNP	C	TCGA-38-4632-01A-01D-1753-08	189285	40979267	22046253	1060	102009											
PTPRT	11122	broad.mit.edu	37	chr20	41101140	41101140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagccgaagggctcccactGcagggtcagctgccgggctc	15	14	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41101140	T	T	41101140	3	4	103	1	0	0	0	0	1	0	0	0	12920	1328	46	3	3266	3	PTPRT	20	41101140	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	121873	41101140	21924380	1061	102010											
ZFP64	55734	broad.mit.edu	37	chr20	50781293	50781293	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataagcagtcttgaattggCaacctaaaaaaaaaaaggaa	7	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50781293	T	T	50781293	3	4	103	1	0	0	0	0	1	0	0	0	17778	710	25	4	2796	4	ZFP64	20	50781293	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	9680153	50781293	12244227	1062	102011											
PCK1	5105	broad.mit.edu	37	chr20	56139650	56139650	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccattgaaggcattatcttTggaggccgtagacctgctgg	12	10	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56139650	A	A	56139650	3	1	103	1	0	0	0	0	1	0	0	0	11675	1809	63	5	1325	5	PCK1	20	56139650	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	5358357	56139650	6885870	1063	102012											
STX16	8675	broad.mit.edu	37	chr20	57246429	57246430	+	Intron	INS	-	A	A													ctttttcctgtactcctttcINSagggaaaaaaattggagcca							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57246430	A	A	57246429	6	5	103	0	1	1	1	0	0	0	0	0	15457	841	29	0		0	STX16	20	57246429	Intron	INS	-	TCGA-38-4632-01A-01D-1753-08	1106779	57246429	5779091	1064	102013											
PHACTR3	116154	broad.mit.edu	37	chr20	58349510	58349510	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgacttgcttttgtatcAggacgaggaggcgctgaacg	14	8	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58349510	T	T	58349510	3	4	103	1	0	0	0	0	1	0	0	0	11906	188	7	5	1165	5	PHACTR3	20	58349510	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	1103081	58349510	4676010	1065	102014											
C20orf166	128826	broad.mit.edu	37	chr20	61150803	61150804	+	5'UTR	DNP	CC	AA	AA													gagagaggtgctgagcccttCctcatggatacggggtcccg							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	61150804	AA	AA	61150803	1	1	103	0	1	0	0	0	0	0	0	0	2117	870	30	3		3	C20orf166	20	61150803	5'UTR	DNP	CC	TCGA-38-4632-01A-01D-1753-08	2801293	61150803	1874717	1066	102015											
SLC2A4RG	56731	broad.mit.edu	37	chr20	62372846	62372846	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccaggtaagactcagatGtctgcatttaggggtgtggg	15	7	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62372846	A	A	62372846	1	1	103	0	1	0	0	0	0	0	0	0	14661	1392	48	4		4	SLC2A4RG	20	62372846	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1222043	62372846	652674	1067	102016											
TMPRSS15	5651	broad.mit.edu	37	chr21	19775907	19775907	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcataggagctgagagaatgAtgcctagaagatatgcctct	11	7	2	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19775907	T	T	19775907	3	4	103	1	0	0	0	0	1	0	0	0	16369	330	12	5	3126	5	TMPRSS15	21	19775907	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08		19775907	28353988	1068	102017											
CYYR1	116159	broad.mit.edu	37	chr21	27945088	27945088	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcaaaggtccttctgcAaaggtcccggtccgtccagc	11	14	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27945088	C	C	27945088	1	2	103	0	1	0	0	0	0	0	0	0	4244	145	5	5		5	CYYR1	21	27945088	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	8169181	27945088	20184807	1069	102018											
KRTAP19-8	728299	broad.mit.edu	37	chr21	32410763	32410763	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcttctgtagtagctcatGgttcagcaactgtagatgtg	11	7	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32410763	A	A	32410763	1	1	103	0	1	0	0	0	0	0	0	0	8606	1363	47	4		4	KRTAP19-8	21	32410763	5'UTR	SNP	G	TCGA-38-4632-01A-01D-1753-08	4465675	32410763	15719132	1070	102019											
TIAM1	7074	broad.mit.edu	37	chr21	32639370	32639370	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tataggcatcttagagaaagCgctcagcctgcagggagggc	14	9	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32639370	T	T	32639370	1	4	103	0	1	0	0	0	0	0	0	0	16013	783	27	4		4	TIAM1	21	32639370	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	228607	32639370	15490525	1071	102020											
BRWD1	54014	broad.mit.edu	37	chr21	40588694	40588694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaccacctgttcagacCattgcttacagaaatatatt	6	9	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40588694	A	A	40588694	1	1	103	0	1	0	0	0	0	0	0	0	1534	609	21	2		2	BRWD1	21	40588694	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	7949324	40588694	7541201	1072	102021											
DSCAM	1826	broad.mit.edu	37	chr21	41384892	41384893	+	3'UTR	INS	-	A	A													tataaatattggaattccgtINSaaaaaaaaggtagctttgat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41384893	A	A	41384892	6	5	103	0	1	1	1	0	0	0	0	0	4808	1653	57	0		0	DSCAM	21	41384892	3'UTR	INS	-	TCGA-38-4632-01A-01D-1753-08	796198	41384892	6745003	1073	102022											
KRTAP10-2	386679	broad.mit.edu	37	chr21	45971197	45971197	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggacacacagctcactgGggtgcagaccagggtcaggc	15	12	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45971197	C	C	45971197	3	2	103	1	0	0	0	0	1	0	0	0	8580	1232	43	4	626	4	KRTAP10-2	21	45971197	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4586305	45971197	2158698	1074	102023											
DIP2A	23181	broad.mit.edu	37	chr21	47985608	47985608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaacacatcacattcttGtcctctgggcccaccagatc	7	14	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47985608	T	T	47985608	1	4	103	0	1	0	0	0	0	0	0	0	4567	1392	48	3		3	DIP2A	21	47985608	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	2014411	47985608	144287	1075	102024											
POTEH	23784	broad.mit.edu	37	chr22	16267032	16267032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accattgtcagcagtggcacCgttagtcaggttttctggga	12	9	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16267032	A	A	16267032	3	1	103	1	0	0	0	0	1	0	0	0	12363	652	23	1	228	1	POTEH	22	16267032	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08		16267032	35037534	1076	102025											
PI4KA	5297	broad.mit.edu	37	chr22	21158629	21158629	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcaagtgagcaataatgaCtttgctggacgtcttggact	13	7	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21158629	G	G	21158629	3	3	103	1	0	0	0	0	1	0	0	0	11968	565	20	4	5064	4	PI4KA	22	21158629	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	4891597	21158629	30145937	1077	102026											
BCR	613	broad.mit.edu	37	chr22	23627343	23627343	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgaggagctggacgctttGaagatcaagatctcccagat	12	8	2	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23627343	C	C	23627343	3	2	103	1	0	0	0	0	1	0	0	0	1393	1281	45	4	2399	4	BCR	22	23627343	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2468714	23627343	27677223	1078	102027											
MYO18B	84700	broad.mit.edu	37	chr22	26343716	26343716	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcagtttgagaaggcGgacctcctgaagcgcatcga	14	10	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26343716	T	T	26343716	2	4	103	1	0	0	0	0	0	0	0	1	10160	1103	39	1		1	MYO18B	22	26343716	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	2716373	26343716	24960850	1079	102028											
GATSL3	652968	broad.mit.edu	37	chr22	30683290	30683290	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccgcacctgggccacagcaGatggcacatcacatgggctc	11	16	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30683290	C	C	30683290	1	2	103	0	1	0	0	0	0	0	0	0	6327	957	33	4		4	GATSL3	22	30683290	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	4339574	30683290	20621276	1080	102029											
MCM5	4174	broad.mit.edu	37	chr22	35813679	35813679	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggctgttccacctcagtgCtgggactcaggcttgggacg	14	12	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35813679	G	G	35813679	1	3	103	0	1	0	0	0	0	0	0	0	9483	812	28	4		4	MCM5	22	35813679	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	5130389	35813679	15490887	1081	102030											
MYH9	4627	broad.mit.edu	37	chr22	36737461	36737462	+	Frame_Shift_Ins	INS	-	G	G													ctgtgatggcatagatgtgaINSgggggcatctcgtgcctctt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36737462	G	G	36737461	7	5	103	1	0	1	1	0	0	0	0	0	10136	291	11	0	5594	0	MYH9	22	36737461	Frame_Shift_Ins	INS	-	TCGA-38-4632-01A-01D-1753-08	923782	36737461	14567105	1082	102031											
ELFN2	114794	broad.mit.edu	37	chr22	37771374	37771374	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggagtagagcacggctttGagcttgttctcgttgagccg	15	8	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37771374	C	C	37771374	2	2	103	1	0	0	0	0	0	0	0	1	5100	1277	45	4		4	ELFN2	22	37771374	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	1033913	37771374	13533192	1083	102032											
PACSIN2	11252	broad.mit.edu	37	chr22	43289720	43289720	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccctgatgcgcccctGgggtcatgtttaccacaccc	10	17	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43289720	C	C	43289720	1	2	103	0	1	0	0	0	0	0	0	0	11469	1363	47	4		4	PACSIN2	22	43289720	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	5518346	43289720	8014846	1084	102033											
PNPLA5	150379	broad.mit.edu	37	chr22	44280253	44280253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagccctggcatggccctGcccacctgaagtctgtgggc	13	14	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44280253	T	T	44280253	1	4	103	0	1	0	0	0	0	0	0	0	12263	1334	46	3		3	PNPLA5	22	44280253	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	990533	44280253	7024313	1085	102034											
PLXNB2	23654	broad.mit.edu	37	chr22	50716360	50716360	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcgtccaggaagtcgaagAagtacttgactgcaggtggc	14	9	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50716360	T	T	50716360	3	4	103	1	0	0	0	0	1	0	0	0	12219	246	9	5	570	5	PLXNB2	22	50716360	Missense_Mutation	SNP	A	TCGA-38-4632-01A-01D-1753-08	6436107	50716360	588206	1086	102035											
PPP2R3B	28227	broad.mit.edu	37	chrX	306222	306222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgctcggtgtccgcgcGgcccgcccgcccctgtgccc	15	19	0	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	306222	T	T	306222	1	4	103	0	1	0	0	0	0	0	0	0	12490	1131	39	1		1	PPP2R3B	23	306222	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08		306222	154964338	1087	102036											
CSF2RA	1438	broad.mit.edu	37	chrX	1409426	1409427	+	Intron	DNP	CC	AG	AG													agaataacacatatgattttCctattgtttataggtgaaat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	1409427	AG	AG	1409426	1	1	103	0	1	0	0	0	0	0	0	0	3968	870	30	3		3	CSF2RA	23	1409426	Intron	DNP	CC	TCGA-38-4632-01A-01D-1753-08	1103204	1409426	153861134	1088	102037											
P2RY8	286530	broad.mit.edu	37	chrX	1584320	1584320	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgtggcctctccatgcgCccctggatctccaagctgcg	10	18	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1584320	A	A	1584320	1	1	103	0	1	0	0	0	0	0	0	0	11449	754	26	3		3	P2RY8	23	1584320	3'UTR	SNP	C	TCGA-38-4632-01A-01D-1753-08	174894	1584320	153686240	1089	102038											
ARSF	416	broad.mit.edu	37	chrX	2998960	2998960	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctagtggtaatagacgtgtCatccaaaatcttgcagtccc	8	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2998960	A	A	2998960	2	1	103	1	0	0	0	0	0	0	0	1	995	813	29	3		3	ARSF	23	2998960	Silent	SNP	C	TCGA-38-4632-01A-01D-1753-08	1414640	2998960	152271600	1090	102039											
NLGN4X	57502	broad.mit.edu	37	chrX	5827164	5827164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgagccaaagatggtcaCtctcttggggtccccgccaa	10	16	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827164	A	A	5827164	3	1	103	1	0	0	0	0	1	0	0	0	10559	565	20	3	1720	3	NLGN4X	23	5827164	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2828204	5827164	149443396	1091	102040											
FRMPD4	9758	broad.mit.edu	37	chrX	12736249	12736249	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccactgaaggtgggatgGctgaaaaaagtggattagaa	15	4	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12736249	A	A	12736249	3	1	103	1	0	0	0	0	1	0	0	0	6119	1203	42	4	3366	4	FRMPD4	23	12736249	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	6909085	12736249	142534311	1092	102041											
GPM6B	2824	broad.mit.edu	37	chrX	13825814	13825814	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcccccagggttggcacggGatggtactggtggttctttg	16	9	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13825814	A	A	13825814	1	1	103	0	1	0	0	0	0	0	0	0	6681	1174	41	4		4	GPM6B	23	13825814	Intron	SNP	G	TCGA-38-4632-01A-01D-1753-08	1089565	13825814	141444746	1093	102042											
DCAF8L2	347442	broad.mit.edu	37	chrX	27765055	27765055	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacggcttaccagacttaGggactgaaagcctgttcagc	11	11	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27765055	A	A	27765055	3	1	103	1	0	0	0	0	1	0	0	0	4311	1000	35	4	45	4	DCAF8L2	23	27765055	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	13939241	27765055	127505505	1094	102043											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29938104	29938104	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggaacaggaagtttccaTctcattaattgtggactctg	11	7	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29938104	A	A	29938104	3	1	103	1	0	0	0	0	1	0	0	0	7731	1435	50	5	976	5	IL1RAPL1	23	29938104	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2173049	29938104	125332456	1095	102044											
CXorf21	80231	broad.mit.edu	37	chrX	30577751	30577751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcatgatgagttcagacGccagaatctgggtaggagaa	13	6	3	5			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30577751	T	T	30577751	3	4	103	1	0	0	0	0	1	0	0	0	4134	1087	38	3	187	3	CXorf21	23	30577751	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	639647	30577751	124692809	1096	102045											
DMD	1756	broad.mit.edu	37	chrX	32430021	32430021	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcaagcaacttttgccTccttacagcctaaaaagaag	6	11	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32430021	A	A	32430021	3	1	103	1	0	0	0	0	1	0	0	0	4620	1550	54	5	7324	5	DMD	23	32430021	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	1852270	32430021	122840539	1097	102046											
FAM47B	170062	broad.mit.edu	37	chrX	34961437	34961437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagctggaggacgcttgGgctcgttgtgaggcccggga	19	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961437	T	T	34961437	3	4	103	1	0	0	0	0	1	0	0	0	5621	1241	43	2	491	2	FAM47B	23	34961437	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2531416	34961437	120309123	1098	102047											
ZNF81	347344	broad.mit.edu	37	chrX	47775135	47775135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctataaatgcaatgaatgtGggaaatcatttttccaggtg	9	6	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47775135	T	T	47775135	3	4	103	1	0	0	0	0	1	0	0	0	18303	1348	47	2	1104	2	ZNF81	23	47775135	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	12813698	47775135	107495425	1099	102048											
SSX3	10214	broad.mit.edu	37	chrX	48206543	48206544	+	Intron	DNP	CC	AA	AA													acaactcaatctcaactcctCctgacctgcagaccctgcac							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	48206544	AA	AA	48206543	1	1	103	0	1	0	0	0	0	0	0	0	15323	870	30	3		3	SSX3	23	48206543	Intron	DNP	CC	TCGA-38-4632-01A-01D-1753-08	431408	48206543	107064017	1100	102049											
SSX3	10214	broad.mit.edu	37	chrX	48214185	48214185	+	Intron	DEL	C	-	-													gcaatatcatcgaaggcctaCaaaaaaaaaaaaaaggaatt							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48214185	-	-	48214185	6	5	103	0	1	1	0	1	0	0	0	0	15323	493	17	0		0	SSX3	23	48214185	Intron	DEL	C	TCGA-38-4632-01A-01D-1753-08	7642	48214185	107056375	1101	102050											
SSX3	10214	broad.mit.edu	37	chrX	48218104	48218104	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaaatacagataggattgGccagaactggtagatggctg	13	5	0	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48218104	C	C	48218104	1	2	103	0	1	0	0	0	0	0	0	0	15323	1218	42	4		4	SSX3	23	48218104	5'Flank	SNP	G	TCGA-38-4632-01A-01D-1753-08	3919	48218104	107052456	1102	102051											
CLCN5	1184	broad.mit.edu	37	chrX	49840441	49840441	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcctttccctccctccccAcaaatcaggttcgttagctg	7	16	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49840441	T	T	49840441	1	4	103	0	1	0	0	0	0	0	0	0	3497	174	6	5		5	CLCN5	23	49840441	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	1622337	49840441	105430119	1103	102052											
DGKK	139189	broad.mit.edu	37	chrX	50127908	50127908	+	Intron	DEL	G	-	-													gggagggaggatggaaggaaGgaaagattaattacacttat							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50127908	-	-	50127908	6	5	103	0	1	1	0	1	0	0	0	0	4512	1015	35	0		0	DGKK	23	50127908	Intron	DEL	G	TCGA-38-4632-01A-01D-1753-08	287467	50127908	105142652	1104	102053											
PAGE2	203569	broad.mit.edu	37	chrX	55117812	55117812	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactggctctgcttaagataGaggatgagcctggagatggt	14	6	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55117812	T	T	55117812	4	4	103	1	0	0	0	0	0	1	0	0	11484	943	33	3	251	3	PAGE2	23	55117812	Nonsense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	4989904	55117812	100152748	1105	102054											
ZC3H12B	340554	broad.mit.edu	37	chrX	64719040	64719040	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgataactaccgagacCttcaagttgaaaagccagaa	7	10	1	4			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64719040	T	T	64719040	3	4	103	1	0	0	0	0	1	0	0	0	17688	681	24	4	920	4	ZC3H12B	23	64719040	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	9601228	64719040	90551520	1106	102055											
VSIG4	11326	broad.mit.edu	37	chrX	65253306	65253306	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgctttcctacccccatAgtgactcacgtttctggaca	7	14	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65253306	T	T	65253306	1	4	103	0	1	0	0	0	0	0	0	0	17352	435	15	5		5	VSIG4	23	65253306	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	534266	65253306	90017254	1107	102056											
HEPH	9843	broad.mit.edu	37	chrX	65413396	65413396	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgaattgggggcacttacTggaaagtgcgatatgaagcc	14	8	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65413396	A	A	65413396	3	1	103	1	0	0	0	0	1	0	0	0	7121	1580	55	5	1477	5	HEPH	23	65413396	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	160090	65413396	89857164	1108	102057											
SLC7A3	84889	broad.mit.edu	37	chrX	70148047	70148047	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatagaaacaggtcgctgcTccacggagaattccctcgaa	10	12	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70148047	G	G	70148047	2	3	103	1	0	0	0	0	0	0	0	1	14812	1538	54	5		5	SLC7A3	23	70148047	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	4734651	70148047	85122513	1109	102058											
PHKA1	5255	broad.mit.edu	37	chrX	71904453	71904453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaagagggaataaagaTacagaactggtcaattatca	11	4	2	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71904453	C	C	71904453	1	2	103	0	1	0	0	0	0	0	0	0	11938	1421	49	5		5	PHKA1	23	71904453	Intron	SNP	T	TCGA-38-4632-01A-01D-1753-08	1756406	71904453	83366107	1110	102059											
ZMAT1	84460	broad.mit.edu	37	chrX	101139127	101139127	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatttctctgttcctgtgTgtttctacagagctatctcc	6	12	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101139127	G	G	101139127	2	3	103	1	0	0	0	0	0	0	0	1	17817	1683	59	5		5	ZMAT1	23	101139127	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	29234674	101139127	54131433	1111	102060											
MCART6	401612	broad.mit.edu	37	chrX	103349993	103349993	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcaagggtggaaaaaaagAgattagactgaccaattaat	11	4	0	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103349993	G	G	103349993	1	3	103	0	1	0	0	0	0	0	0	0	9464	319	11	5		5	MCART6	23	103349993	Intron	SNP	A	TCGA-38-4632-01A-01D-1753-08	2210866	103349993	51920567	1112	102061											
COL4A6	1288	broad.mit.edu	37	chrX	107449608	107449608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgcaagagcatgctttaCtttaaccctccaagaatgga	7	12	0	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107449608	A	A	107449608	1	1	103	0	1	0	0	0	0	0	0	0	3727	580	20	3		3	COL4A6	23	107449608	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	4099615	107449608	47820952	1113	102062											
COL4A6	1288	broad.mit.edu	37	chrX	107462816	107462816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatacatatctcaacaCttgttcctgagcatgcttgc	5	13	2	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107462816	A	A	107462816	1	1	103	0	1	0	0	0	0	0	0	0	3727	580	20	3		3	COL4A6	23	107462816	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	13208	107462816	47807744	1114	102063											
COL4A5	1287	broad.mit.edu	37	chrX	107930773	107930773	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggtcccccaggtcccccTggaacctcctctgttgcaca	8	18	1	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107930773	A	A	107930773	2	1	103	1	0	0	0	0	0	0	0	1	3726	1567	55	5		5	COL4A5	23	107930773	Silent	SNP	T	TCGA-38-4632-01A-01D-1753-08	467957	107930773	47339787	1115	102064											
AMOT	154796	broad.mit.edu	37	chrX	112054522	112054522	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcctccgaatctcgccctCtagcttgtttctcatggctt	6	15	3	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112054522	A	A	112054522	4	1	103	1	0	0	0	0	0	1	0	0	582	922	32	3	1798	3	AMOT	23	112054522	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	4123749	112054522	43216038	1116	102065											
LUZP4	51213	broad.mit.edu	37	chrX	114540964	114540964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacagatctcaagggcaGctaaagagacatcatcccca	8	12	3	3	rs2232735	byFrequency;by1000genomes	TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114540964	T	T	114540964	3	4	103	1	0	0	0	0	1	0	0	0	9175	962	34	3	551	3	LUZP4	23	114540964	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	2486442	114540964	40729596	1117	102066											
TFDP3	51270	broad.mit.edu	37	chrX	132351100	132351100	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcattctcactgaggtcGtcatcgttgttgtcctcctc	8	13	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132351100	A	A	132351100	2	1	103	1	0	0	0	0	0	0	0	1	15922	1136	40	4		4	TFDP3	23	132351100	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	17810136	132351100	22919460	1118	102067											
MAP7D3	79649	broad.mit.edu	37	chrX	135303096	135303096	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacggcattttaaatttggTaggtgagcctgtgccattta	11	6	0	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135303096	A	A	135303096	3	1	103	1	0	0	0	0	1	0	0	0	9361	1638	57	5	328	5	MAP7D3	23	135303096	Missense_Mutation	SNP	T	TCGA-38-4632-01A-01D-1753-08	2951996	135303096	19967464	1119	102068											
GPR112	139378	broad.mit.edu	37	chrX	135429849	135429849	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actccctctgatggaaatttGgcttcatctcccacttctgg	7	13	4	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135429849	A	A	135429849	2	1	103	1	0	0	0	0	0	0	0	1	6694	1339	47	4		4	GPR112	23	135429849	Silent	SNP	G	TCGA-38-4632-01A-01D-1753-08	126753	135429849	19840711	1120	102069											
ATP11C	286410	broad.mit.edu	37	chrX	138827926	138827926	+	Frame_Shift_Del	DEL	C	-	-													gtctgaaaaagaaagtaagtCccaaagaagaacactgtccc							TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138827926	-	-	138827926	7	5	103	1	0	1	0	1	0	0	0	0	1125	842	30	0	557	0	ATP11C	23	138827926	Frame_Shift_Del	DEL	C	TCGA-38-4632-01A-01D-1753-08	3398077	138827926	16442634	1121	102070											
MAGEC3	139081	broad.mit.edu	37	chrX	140984766	140984766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatctctccccagggtcctCcgcagagtcctccccagagt	9	17	1	3			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140984766	A	A	140984766	3	1	103	1	0	0	0	0	1	0	0	0	9274	855	30	3	1477	3	MAGEC3	23	140984766	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	2156840	140984766	14285794	1122	102071											
MAGEC1	9947	broad.mit.edu	37	chrX	140994298	140994298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacttttgagggttttcccCagtctcctctccagattcct	7	13	2	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140994298	A	A	140994298	3	1	103	1	0	0	0	0	1	0	0	0	9272	595	21	2	1114	2	MAGEC1	23	140994298	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	9532	140994298	14276262	1123	102072											
SPANXN4	441525	broad.mit.edu	37	chrX	142113811	142113811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccataatcatggaagagcCaacttccagcaccaacgaga	7	12	1	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142113811	A	A	142113811	3	1	103	1	0	0	0	0	1	0	0	0	15109	594	21	2	13	2	SPANXN4	23	142113811	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1119513	142113811	13156749	1124	102073											
AFF2	2334	broad.mit.edu	37	chrX	147743642	147743642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcaccaggataatacccatCcttcagcaccaatgcctcca	4	17	2	0			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147743642	A	A	147743642	3	1	103	1	0	0	0	0	1	0	0	0	357	855	30	3	404	3	AFF2	23	147743642	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	5629831	147743642	7526918	1125	102074											
MAGEA10	4109	broad.mit.edu	37	chrX	151302988	151302988	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatctgtcttactttattCagggtaggagaagctacctg	10	7	3	2			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151302988	A	A	151302988	4	1	103	1	0	0	0	0	0	1	0	0	9252	835	29	3	8	3	MAGEA10	23	151302988	Nonsense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	3559346	151302988	3967572	1126	102075											
ATP2B3	492	broad.mit.edu	37	chrX	152814197	152814197	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggctggcagagtgcacgcCggtctatgtacaatacttcg	12	10	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152814197	T	T	152814197	3	4	103	1	0	0	0	0	1	0	0	0	1145	652	23	4	1253	4	ATP2B3	23	152814197	Missense_Mutation	SNP	C	TCGA-38-4632-01A-01D-1753-08	1511209	152814197	2456363	1127	102076											
GAB3	139716	broad.mit.edu	37	chrX	153927854	153927854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgctatcagagggcggCcaaagctgtacatatggttt	11	8	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153927854	A	A	153927854	1	1	103	0	1	0	0	0	0	0	0	0	6210	754	26	3		3	GAB3	23	153927854	Intron	SNP	C	TCGA-38-4632-01A-01D-1753-08	1113657	153927854	1342706	1128	102077											
BRCC3	79184	broad.mit.edu	37	chrX	154299836	154299836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcaggcggtgcaggcgGttcatctcgagtctgacgct	16	10	3	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154299836	T	T	154299836	3	4	103	1	0	0	0	0	1	0	0	0	1509	1261	44	3	36	3	BRCC3	23	154299836	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08	371982	154299836	970724	1129	102078											
AMELY	266	broad.mit.edu	37	chrY	6736316	6736316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctgatggtgttgggttGgagtcatggattgctggcca	17	5	1	1			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6736316	T	T	6736316	3	4	103	1	0	0	0	0	1	0	0	0	570	1348	47	2	251	2	AMELY	24	6736316	Missense_Mutation	SNP	G	TCGA-38-4632-01A-01D-1753-08		6736316	52637250	1130	102079											
PADI2	11240	broad.mit.edu	37	chr1	17405776	17405776	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacagaggaaagctgctcccGatgaggatgcggccaagcgg	15	10	0	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17405776	A	A	17405776	2	1	104	1	0	0	0	0	0	0	0	1	11472	1048	37	4		4	PADI2	1	17405776	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08		17405776	231844845	1	102080											
LDLRAD2	401944	broad.mit.edu	37	chr1	22148734	22148734	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatcaaagactcaggaggcCcctggcggggatagcaccgt	13	12	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22148734	T	T	22148734	1	4	104	0	1	0	0	0	0	0	0	0	8778	638	22	4		4	LDLRAD2	1	22148734	3'UTR	SNP	C	TCGA-38-6178-01A-11D-1753-08	4742958	22148734	227101887	2	102081											
AHDC1	27245	broad.mit.edu	37	chr1	27874501	27874501	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggtgggaaatgcttgccatCaagctcgggagcacccaggc	14	12	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27874501	G	G	27874501	3	3	104	1	0	0	0	0	1	0	0	0	412	826	29	4	689	4	AHDC1	1	27874501	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	5725767	27874501	221376120	3	102082											
CSF3R	1441	broad.mit.edu	37	chr1	36937240	36937240	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgctgtcttcctccaggGgcactggctgtggggcacag	15	13	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36937240	A	A	36937240	3	1	104	1	0	0	0	0	1	0	0	0	3971	1232	43	4	1653	4	CSF3R	1	36937240	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	9062739	36937240	212313381	4	102083											
GRIK3	2899	broad.mit.edu	37	chr1	37271784	37271784	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagttcctctgcgtgacGtactcgatggtggtggactc	13	10	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37271784	A	A	37271784	2	1	104	1	0	0	0	0	0	0	0	1	6841	1140	40	4		4	GRIK3	1	37271784	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	334544	37271784	211978837	5	102084											
GRIK3	2899	broad.mit.edu	37	chr1	37324731	37324731	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgatgaagttcatgaagCggccgccaaagcgccaggcc	12	13	1	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37324731	T	T	37324731	3	4	104	1	0	0	0	0	1	0	0	0	6841	768	27	4	1717	4	GRIK3	1	37324731	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	52947	37324731	211925890	6	102085											
TIE1	7075	broad.mit.edu	37	chr1	43775179	43775179	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctggcggccaagacagcCggcgcttcaaggtcaatgtg	13	12	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43775179	T	T	43775179	3	4	104	1	0	0	0	0	1	0	0	0	16016	643	23	4	1343	4	TIE1	1	43775179	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	6450448	43775179	205475442	7	102086											
USP24	23358	broad.mit.edu	37	chr1	55604671	55604671	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaatctctcaattattacAagtttagtagatctatagat	5	6	3	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55604671	T	T	55604671	2	4	104	1	0	0	0	0	0	0	0	1	17181	117	5	5		5	USP24	1	55604671	Silent	SNP	A	TCGA-38-6178-01A-11D-1753-08	11829492	55604671	193645950	8	102087											
VAV3	10451	broad.mit.edu	37	chr1	108185292	108185292	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagttcaacggtatccccGgcctggagctgtaaaggggg	15	9	1	1	rs142820345		TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108185292	C	C	108185292	2	2	104	1	0	0	0	0	0	0	0	1	17260	1103	39	4		4	VAV3	1	108185292	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	52580621	108185292	141065329	9	102088											
C1orf59	113802	broad.mit.edu	37	chr1	109193600	109193600	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatcaatatttatttcctaaGattttaaactccaacaggat	3	7	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109193600	T	T	109193600	1	4	104	0	1	0	0	0	0	0	0	0	2073	957	33	3		3	C1orf59	1	109193600	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	1008308	109193600	140057021	10	102089											
TMEM167B	56900	broad.mit.edu	37	chr1	109635561	109635561	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgctctttgtttgcacCtgtgcctacttcaagaaagt	9	9	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109635561	G	G	109635561	2	3	104	1	0	0	0	0	0	0	0	1	16205	668	24	4		4	TMEM167B	1	109635561	Silent	SNP	C	TCGA-38-6178-01A-11D-1753-08	441961	109635561	139615060	11	102090											
SPAG17	200162	broad.mit.edu	37	chr1	118584635	118584635	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcccttaagcgctcctcttCtgctaatcgatgttgctctt	6	13	3	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118584635	T	T	118584635	3	4	104	1	0	0	0	0	1	0	0	0	15095	922	32	4	3938	4	SPAG17	1	118584635	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	8949074	118584635	130665986	12	102091											
TCHH	7062	broad.mit.edu	37	chr1	152084547	152084547	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgctgctcgcgcctcagCtgctgctcgcgcctcagctg	12	17	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152084547	T	T	152084547	2	4	104	1	0	0	0	0	0	0	0	1	15822	796	28	4		4	TCHH	1	152084547	Silent	SNP	C	TCGA-38-6178-01A-11D-1753-08	33499912	152084547	97166074	13	102092											
ADAR	103	broad.mit.edu	37	chr1	154600411	154600411	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctccccccaccctcccccAccacgtagccttctctacct	2	26	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154600411	C	C	154600411	1	2	104	0	1	0	0	0	0	0	0	0	281	174	6	5		5	ADAR	1	154600411	5'UTR	SNP	A	TCGA-38-6178-01A-11D-1753-08	2515864	154600411	94650210	14	102093											
CCDC19	25790	broad.mit.edu	37	chr1	159856536	159856536	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggatgtgtaagtttaagggGaagaaatggaaacagaatgc	15	2	0	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159856536	A	A	159856536	1	1	104	0	1	0	0	0	0	0	0	0	2822	1189	41	4		4	CCDC19	1	159856536	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	5256125	159856536	89394085	15	102094											
USP21	27005	broad.mit.edu	37	chr1	161132038	161132038	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtctggagagataacagCagtgtccctactgctcccca	11	12	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161132038	T	T	161132038	1	4	104	0	1	0	0	0	0	0	0	0	17179	725	25	4		4	USP21	1	161132038	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	1275502	161132038	88118583	16	102095											
RXRG	6258	broad.mit.edu	37	chr1	165370602	165370602	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgctccaggcatttcaaGccaatggaacgcagagctgg	13	10	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165370602	T	T	165370602	2	4	104	1	0	0	0	0	0	0	0	1	13876	958	34	3		3	RXRG	1	165370602	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	4238564	165370602	83880019	17	102096											
NCF2	4688	broad.mit.edu	37	chr1	183538142	183538142	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttctagcctgacattctaGaagaagcctgacattccaga	7	11	2	5			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183538142	C	C	183538142	1	2	104	0	1	0	0	0	0	0	0	0	10312	957	33	4		4	NCF2	1	183538142	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	18167540	183538142	65712479	18	102097											
HMCN1	83872	broad.mit.edu	37	chr1	185984588	185984588	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgaggaacaacatatgcTttaattatatacctttctac	6	7	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185984588	G	G	185984588	1	3	104	0	1	0	0	0	0	0	0	0	7287	1624	56	5		5	HMCN1	1	185984588	Intron	SNP	T	TCGA-38-6178-01A-11D-1753-08	2446446	185984588	63266033	19	102098											
TPR	7175	broad.mit.edu	37	chr1	186322931	186322931	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgatttctctcatgaagTgatgttatttctcgacgata	7	7	4	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186322931	G	G	186322931	2	3	104	1	0	0	0	0	0	0	0	1	16540	1683	59	5		5	TPR	1	186322931	Silent	SNP	T	TCGA-38-6178-01A-11D-1753-08	338343	186322931	62927690	20	102099											
ZNF281	23528	broad.mit.edu	37	chr1	200377574	200377574	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgattcatttgttttaccGgtcttctgttccttattttc	6	9	3	0	rs149361792		TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200377574	A	A	200377574	2	1	104	1	0	0	0	0	0	0	0	1	17944	1103	39	4		4	ZNF281	1	200377574	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	14054643	200377574	48873047	21	102100											
ZNF281	23528	broad.mit.edu	37	chr1	200377927	200377927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcatgtctctgtagtaGgtatttctgaatgaaaccca	7	8	3	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200377927	T	T	200377927	3	4	104	1	0	0	0	0	1	0	0	0	17944	991	35	2	1784	2	ZNF281	1	200377927	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	353	200377927	48872694	22	102101											
RAB7L1	8934	broad.mit.edu	37	chr1	205739407	205739407	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taataaaattgtcaggtgggCaaccaaagggaagagactta	11	5	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205739407	A	A	205739407	1	1	104	0	1	0	0	0	0	0	0	0	13063	725	25	3		3	RAB7L1	1	205739407	3'UTR	SNP	C	TCGA-38-6178-01A-11D-1753-08	5361480	205739407	43511214	23	102102											
LGTN	1939	broad.mit.edu	37	chr1	206768965	206768965	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataaaaaaatctttgatgAgtttgaggccaatctaaaaa	6	5	3	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206768965	C	C	206768965	1	2	104	0	1	0	0	0	0	0	0	0	8832	319	11	5		5	LGTN	1	206768965	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	1029558	206768965	42481656	24	102103											
CENPF	1063	broad.mit.edu	37	chr1	214815962	214815962	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttacatgatcagcactgtcaGatgagctctaaaatgtcaga	8	8	4	4			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214815962	A	A	214815962	2	1	104	1	0	0	0	0	0	0	0	1	3261	933	33	4		4	CENPF	1	214815962	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	8046997	214815962	34434659	25	102104											
CAPN2	824	broad.mit.edu	37	chr1	223958277	223958277	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtttaatctgtctgtagaAtatgtgaacactcatcttat	6	6	4	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223958277	G	G	223958277	1	3	104	0	1	0	0	0	0	0	0	0	2653	116	4	5		5	CAPN2	1	223958277	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	9142315	223958277	25292344	26	102105											
AGT	183	broad.mit.edu	37	chr1	230841617	230841617	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtctactccccaccccGcccccagcctgggcaggaca	10	19	1	0	rs61762528	byFrequency	TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230841617	A	A	230841617	1	1	104	0	1	0	0	0	0	0	0	0	399	1102	38	4		4	AGT	1	230841617	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	6883340	230841617	18409004	27	102106											
OR2B11	127623	broad.mit.edu	37	chr1	247615003	247615003	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcctccatagctgatggtCttctgggaactgcccatgtt	10	12	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247615003	A	A	247615003	3	1	104	1	0	0	0	0	1	0	0	0	11082	912	32	3	674	3	OR2B11	1	247615003	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	16773386	247615003	1635618	28	102107											
OR2T6	254879	broad.mit.edu	37	chr1	248551128	248551128	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtcattgacacattataCatctccaccattgtgcccaa	4	14	2	1	rs61736241	byFrequency;by1000genomes	TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248551128	A	A	248551128	4	1	104	1	0	0	0	0	0	1	0	0	11123	489	17	3	221	3	OR2T6	1	248551128	Nonsense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	936125	248551128	699493	29	102108											
TPO	7173	broad.mit.edu	37	chr2	1499824	1499824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagctggagaagcactcCctgtctcgggtcatctgtga	13	11	3	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1499824	A	A	1499824	2	1	104	1	0	0	0	0	0	0	0	1	16534	610	22	2		2	TPO	2	1499824	Silent	SNP	C	TCGA-38-6178-01A-11D-1753-08		1499824	241699549	30	102109											
KCNS3	3790	broad.mit.edu	37	chr2	18113204	18113208	+	Frame_Shift_Del	DEL	TTCGG	-	-													tgcccggcactcggtaggacTtcggtctctaggtgccacac							TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18113208	-	-	18113204	7	5	104	1	0	1	0	1	0	0	0	0	8160	1609	56	0	931	0	KCNS3	2	18113204	Frame_Shift_Del	DEL	TTCGG	TCGA-38-6178-01A-11D-1753-08	16613380	18113204	225086169	31	102110											
DHX57	90957	broad.mit.edu	37	chr2	39025509	39025509	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgaggacacgtacacagatCaatgcttgggtttttaattt	9	7	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39025509	G	G	39025509	3	3	104	1	0	0	0	0	1	0	0	0	4553	826	29	4	71	4	DHX57	2	39025509	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	20912305	39025509	204173864	32	102111											
SFTPB	6439	broad.mit.edu	37	chr2	85890532	85890532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtggtatggcctgctcGctgctgttcccggcctgggt	15	13	0	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85890532	T	T	85890532	3	4	104	1	0	0	0	0	1	0	0	0	14304	1078	38	3	218	3	SFTPB	2	85890532	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	46865023	85890532	157308841	33	102112											
ZAP70	7535	broad.mit.edu	37	chr2	98354270	98354270	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtacgcacccgaatgcatCaacttccgcaagttctccag	8	14	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98354270	A	A	98354270	2	1	104	1	0	0	0	0	0	0	0	1	17641	816	29	3		3	ZAP70	2	98354270	Silent	SNP	C	TCGA-38-6178-01A-11D-1753-08	12463738	98354270	144845103	34	102113											
NPHP1	4867	broad.mit.edu	37	chr2	110904346	110904346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactttgctggaataggaaCtccactggcatcaaaaagtt	8	8	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110904346	A	A	110904346	3	1	104	1	0	0	0	0	1	0	0	0	10674	565	20	3	725	3	NPHP1	2	110904346	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	12550076	110904346	132295027	35	102114											
CNTNAP5	129684	broad.mit.edu	37	chr2	124783277	124783277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgactttgctgttctctgGcttgtggcatttaggattaa	10	6	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124783277	T	T	124783277	3	4	104	1	0	0	0	0	1	0	0	0	3682	1203	42	3	52	3	CNTNAP5	2	124783277	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	13878931	124783277	118416096	36	102115											
SLC25A12	8604	broad.mit.edu	37	chr2	172691271	172691271	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatctttccttgtgccagcTagagtgctatatatcttacg	7	10	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172691271	C	C	172691271	2	2	104	1	0	0	0	0	0	0	0	1	14588	1509	53	5		5	SLC25A12	2	172691271	Silent	SNP	T	TCGA-38-6178-01A-11D-1753-08	47907994	172691271	70508102	37	102116											
TTN	7273	broad.mit.edu	37	chr2	179532416	179532416	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgagtcacaagtactttttCttctaggactgcttcttcag	7	9	5	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179532416	T	T	179532416	3	4	104	1	0	0	0	0	1	0	0	0	16861	928	32	4		4	TTN	2	179532416	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	6841145	179532416	63666957	38	102117											
TTN	7273	broad.mit.edu	37	chr2	179577963	179577963	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtatttccttccactactGatctcatttccttcatggaa	5	11	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179577963	T	T	179577963	2	4	104	1	0	0	0	0	0	0	0	1	16861	1280	45	3		3	TTN	2	179577963	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	45547	179577963	63621410	39	102118											
WDR75	84128	broad.mit.edu	37	chr2	190334206	190334206	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagtaagagaacatctatgAcctaagttttcttcttaata	6	6	3	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190334206	G	G	190334206	1	3	104	0	1	0	0	0	0	0	0	0	17452	290	10	5		5	WDR75	2	190334206	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	10756243	190334206	52865167	40	102119											
PTPRN	5798	broad.mit.edu	37	chr2	220165618	220165618	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaggtttggcaagggggcGtgctgccatggggtgattat	17	5	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220165618	A	A	220165618	1	1	104	0	1	0	0	0	0	0	0	0	12915	1160	40	4		4	PTPRN	2	220165618	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	29831412	220165618	23033755	41	102120											
COL6A3	1293	broad.mit.edu	37	chr2	238285691	238285691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcgatccggctgccagCagacttcacaaaaatgtacc	7	14	1	1	rs112827048		TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238285691	A	A	238285691	3	1	104	1	0	0	0	0	1	0	0	0	3733	710	25	3	6938	3	COL6A3	2	238285691	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	18120073	238285691	4913682	42	102121											
PPP1R7	5510	broad.mit.edu	37	chr2	242109135	242109135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacttgacactgcctgcgtGgtcatgcaaatcactgttga	10	11	2	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242109135	C	C	242109135	1	2	104	0	1	0	0	0	0	0	0	0	12477	1363	47	4		4	PPP1R7	2	242109135	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	3823444	242109135	1090238	43	102122											
TRAIP	10293	broad.mit.edu	37	chr3	49869282	49869282	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactcagagctaacagcacaGggcctgcagagctgtcttag	11	12	2	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49869282	C	C	49869282	1	2	104	0	1	0	0	0	0	0	0	0	16572	1015	35	4		4	TRAIP	3	49869282	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08		49869282	148153148	44	102123											
EPHA3	2042	broad.mit.edu	37	chr3	89390135	89390135	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagtgcccgcctcacagttCtactcaggaagatggttcaa	9	11	4	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89390135	A	A	89390135	3	1	104	1	0	0	0	0	1	0	0	0	5210	913	32	3	898	3	EPHA3	3	89390135	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	39520853	89390135	108632295	45	102124											
SIDT1	54847	broad.mit.edu	37	chr3	113335108	113335108	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttggggcagtcactcacGgctcctaaaatcaagaaggc	12	11	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113335108	A	A	113335108	1	1	104	0	1	0	0	0	0	0	0	0	14415	1131	39	4		4	SIDT1	3	113335108	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	23944973	113335108	84687322	46	102125											
IGSF10	285313	broad.mit.edu	37	chr3	151164774	151164774	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggatgttaactgtactatTtctagggatcggaaactgag	12	6	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151164774	C	C	151164774	3	2	104	1	0	0	0	0	1	0	0	0	7667	1841	64	5	4936	5	IGSF10	3	151164774	Missense_Mutation	SNP	T	TCGA-38-6178-01A-11D-1753-08	37829666	151164774	46857656	47	102126											
CCDC39	339829	broad.mit.edu	37	chr3	180349366	180349366	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaattttacttagccgcTcgcgaaactcagtgctaata	6	11	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180349366	C	C	180349366	3	2	104	1	0	0	0	0	1	0	0	0	2838	1551	54	5	964	5	CCDC39	3	180349366	Missense_Mutation	SNP	T	TCGA-38-6178-01A-11D-1753-08	29184592	180349366	17673064	48	102127											
PGM2	55276	broad.mit.edu	37	chr4	37847254	37847254	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttcatattcttcttcagActttgtcttttgctttggct	5	8	5	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37847254	T	T	37847254	3	4	104	1	0	0	0	0	1	0	0	0	11893	289	10	5	940	5	PGM2	4	37847254	Missense_Mutation	SNP	A	TCGA-38-6178-01A-11D-1753-08		37847254	153307022	49	102128											
KLF3	51274	broad.mit.edu	37	chr4	38682392	38682392	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attattccttgaaatcatggCcgggcgtggtggctcacgcc	12	11	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38682392	T	T	38682392	1	4	104	0	1	0	0	0	0	0	0	0	8418	754	26	4		4	KLF3	4	38682392	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	835138	38682392	152471884	50	102129											
GABRA4	2557	broad.mit.edu	37	chr4	46966989	46966989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggattaagtcaaatacctGcagaggggcttcaggatgct	13	7	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46966989	T	T	46966989	3	4	104	1	0	0	0	0	1	0	0	0	6223	1328	46	3	540	3	GABRA4	4	46966989	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	8284597	46966989	144187287	51	102130											
ATP10D	57205	broad.mit.edu	37	chr4	47559751	47559751	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaagtcttttccagagatGgtctgtccgaagatcaagtt	9	7	3	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47559751	A	A	47559751	4	1	104	1	0	0	0	0	0	1	0	0	1122	1357	47	4	1937	4	ATP10D	4	47559751	Nonsense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	592762	47559751	143594525	52	102131											
WDFY3	23001	broad.mit.edu	37	chr4	85605244	85605244	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccattgatgctccacacaTggatatatgtgccagcgcag	9	12	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85605244	C	C	85605244	3	2	104	1	0	0	0	0	1	0	0	0	17397	1464	51	5	1026	5	WDFY3	4	85605244	Missense_Mutation	SNP	T	TCGA-38-6178-01A-11D-1753-08	38045493	85605244	105549032	53	102132											
PTPN13	5783	broad.mit.edu	37	chr4	87696609	87696609	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaggtttttccttatgtGgaggtcatgacagcctttat	9	7	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87696609	T	T	87696609	4	4	104	1	0	0	0	0	0	1	0	0	12888	1349	47	2	5844	2	PTPN13	4	87696609	Nonsense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	2091365	87696609	103457667	54	102133											
SGMS2	166929	broad.mit.edu	37	chr4	108831634	108831634	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccgctgtcttggcctccTggctgcttcaaatcatcatg	10	13	4	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108831634	G	G	108831634	2	3	104	1	0	0	0	0	0	0	0	1	14328	1567	55	5		5	SGMS2	4	108831634	Silent	SNP	T	TCGA-38-6178-01A-11D-1753-08	21135025	108831634	82322642	55	102134											
FSTL5	56884	broad.mit.edu	37	chr4	162307279	162307279	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtatttctcctctgatggTaatgtactgaacccttacaa	6	10	2	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162307279	C	C	162307279	3	2	104	1	0	0	0	0	1	0	0	0	6140	1638	57	5	383	5	FSTL5	4	162307279	Missense_Mutation	SNP	T	TCGA-38-6178-01A-11D-1753-08	53475645	162307279	28846997	56	102135			1	79		2	2	12	N	T_A	6.182641e-05
FSTL5	56884	broad.mit.edu	37	chr4	162307290	162307290	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgatggtaatgtactgaAcccttacaagacctttcaca	6	11	2	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162307290	T	T	162307290	3	4	104	1	0	0	0	0	1	0	0	0	6140	43	2	5	394	5	FSTL5	4	162307290	Missense_Mutation	SNP	A	TCGA-38-6178-01A-11D-1753-08	11	162307290	28846986	57	102136			1	79		2	2	12	N	T_A	6.182641e-05
GPM6A	2823	broad.mit.edu	37	chr4	176733292	176733292	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtctaaagcaaacaaggAaactgcaaaataattactta	6	6	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176733292	G	G	176733292	1	3	104	0	1	0	0	0	0	0	0	0	6680	261	9	5		5	GPM6A	4	176733292	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	14426002	176733292	14420984	58	102137											
RWDD4A	201965	broad.mit.edu	37	chr4	184570665	184570665	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttcttttttgtcttttttCttacttgatggggctgtatt	8	5	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184570665	T	T	184570665	2	4	104	1	0	0	0	0	0	0	0	1	13869	912	32	4		4	RWDD4A	4	184570665	Silent	SNP	C	TCGA-38-6178-01A-11D-1753-08	7837373	184570665	6583611	59	102138											
FAT1	2195	broad.mit.edu	37	chr4	187519168	187519168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacactggcaaacaaagcctCcgttgtcgacaacacacgtg	8	13	0	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187519168	A	A	187519168	3	1	104	1	0	0	0	0	1	0	0	0	5746	855	30	3	1571	3	FAT1	4	187519168	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	2948503	187519168	3635108	60	102139											
CDH12	1010	broad.mit.edu	37	chr5	21883028	21883028	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacacaaatgaagaatctgGggatggcactaccactgcta	9	9	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21883028	C	C	21883028	1	2	104	0	1	0	0	0	0	0	0	0	3128	1247	43	4		4	CDH12	5	21883028	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08		21883028	159032232	61	102140											
RNASEN	29102	broad.mit.edu	37	chr5	31448720	31448720	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggtgttaatccctattTaaaataaaaaacaaatacac	3	7	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31448720	C	C	31448720	1	2	104	0	1	0	0	0	0	0	0	0	13528	1769	61	5		5	RNASEN	5	31448720	Intron	SNP	T	TCGA-38-6178-01A-11D-1753-08	9565692	31448720	149466540	62	102141											
SLC1A3	6507	broad.mit.edu	37	chr5	36671141	36671141	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccaccaggaatggcggcGctagatagtaaggcatcagg	13	11	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36671141	A	A	36671141	2	1	104	1	0	0	0	0	0	0	0	1	14546	1074	38	4		4	SLC1A3	5	36671141	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	5222421	36671141	144244119	63	102142											
IL31RA	133396	broad.mit.edu	37	chr5	55201911	55201911	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagttgggtagctgtgaaGcagtccttttctctcctttc	10	9	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55201911	A	A	55201911	1	1	104	0	1	0	0	0	0	0	0	0	7761	986	34	4		4	IL31RA	5	55201911	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	18530770	55201911	125713349	64	102143											
ERCC8	1161	broad.mit.edu	37	chr5	60224687	60224687	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatacaagtataataaacTtactatctcccttcaacagg	3	9	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60224687	G	G	60224687	1	3	104	0	1	0	0	0	0	0	0	0	5261	1624	56	5		5	ERCC8	5	60224687	Intron	SNP	T	TCGA-38-6178-01A-11D-1753-08	5022776	60224687	120690573	65	102144											
CDK7	1022	broad.mit.edu	37	chr5	68558042	68558042	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttctttaggtggtatcggGcccccgagttactatttgga	12	8	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68558042	A	A	68558042	3	1	104	1	0	0	0	0	1	0	0	0	3179	1203	42	4	568	4	CDK7	5	68558042	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	8333355	68558042	112357218	66	102145											
ARAP3	64411	broad.mit.edu	37	chr5	141049581	141049581	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcagggctgttttccgaTgcaaacatttccagagctgc	11	10	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141049581	C	C	141049581	2	2	104	1	0	0	0	0	0	0	0	1	842	1451	51	5		5	ARAP3	5	141049581	Silent	SNP	T	TCGA-38-6178-01A-11D-1753-08	72491539	141049581	39865679	67	102146											
DOCK2	1794	broad.mit.edu	37	chr5	169188494	169188494	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agacatgggtctgccttgctCtaccagctcctatttttcct	7	13	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169188494	G	G	169188494	1	3	104	0	1	0	0	0	0	0	0	0	4727	928	32	4		4	DOCK2	5	169188494	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	28138913	169188494	11726766	68	102147											
CLTB	1212	broad.mit.edu	37	chr5	175819715	175819715	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctccaccccgaccaaagcAgctgctcctcctgtgcccag	8	19	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175819715	C	C	175819715	1	2	104	0	1	0	0	0	0	0	0	0	3597	203	7	5		5	CLTB	5	175819715	3'UTR	SNP	A	TCGA-38-6178-01A-11D-1753-08	6631221	175819715	5095545	69	102148											
MUTED	63915	broad.mit.edu	37	chr6	8015850	8015850	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagagaggtgaacatcttcTcattagtttgtgattgttgt	12	4	2	3	rs74957603	byFrequency;by1000genomes	TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8015850	G	G	8015850	1	3	104	0	1	0	0	0	0	0	0	0	10086	1566	54	5		5	MUTED	6	8015850	3'UTR	SNP	T	TCGA-38-6178-01A-11D-1753-08		8015850	163099217	70	102149											
SLC35B3	51000	broad.mit.edu	37	chr6	8419843	8419843	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagaagcattatgaagtttCatagctttctcttgaacatt	6	6	2	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8419843	T	T	8419843	3	4	104	1	0	0	0	0	1	0	0	0	14691	826	29	4	475	4	SLC35B3	6	8419843	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	403993	8419843	162695224	71	102150											
HIST1H3D	8351	broad.mit.edu	37	chr6	26199743	26199743	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccagctgcagagtgaggaCacttgcatttctctttaggt	10	9	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26199743	A	A	26199743	1	1	104	0	1	0	0	0	0	0	0	0	7225	493	17	3		3	HIST1H3D	6	26199743	5'Flank	SNP	C	TCGA-38-6178-01A-11D-1753-08	17779900	26199743	144915324	72	102151											
NKAPL	222698	broad.mit.edu	37	chr6	28227351	28227351	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgctctttacccctttagtCgctctgggtcgcgagggcgg	14	13	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28227351	T	T	28227351	3	4	104	1	0	0	0	0	1	0	0	0	10535	884	31	4	204	4	NKAPL	6	28227351	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	2027608	28227351	142887716	73	102152											
TCTE1	202500	broad.mit.edu	37	chr6	44250096	44250096	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagccagggactgggcaccGggtgcacgcacctggttgtt	16	11	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44250096	A	A	44250096	2	1	104	1	0	0	0	0	0	0	0	1	15839	1103	39	4		4	TCTE1	6	44250096	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	16022745	44250096	126864971	74	102153											
EFHC1	114327	broad.mit.edu	37	chr6	52370325	52370325	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaagggtctgctgcctccaGaccttctgcaagggctgtgc	12	12	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52370325	A	A	52370325	1	1	104	0	1	0	0	0	0	0	0	0	4986	957	33	4		4	EFHC1	6	52370325	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	8120229	52370325	118744742	75	102154			2	80		3	3	107	G		1.75745e-07
TRAM2	9697	broad.mit.edu	37	chr6	52370414	52370414	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctgcaaaacaaagtgttGaagttccctttctcgggatc	8	11	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52370414	A	A	52370414	2	1	104	1	0	0	0	0	0	0	0	1	16577	1281	45	4		4	TRAM2	6	52370414	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	89	52370414	118744653	76	102155			2	80		3	3	107	G		1.75745e-07
TRAM2	9697	broad.mit.edu	37	chr6	52370431	52370431	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttgaagttccctttctcggGatcaaatgcctggttttcca	9	10	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52370431	A	A	52370431	3	1	104	1	0	0	0	0	1	0	0	0	16577	1174	41	4	283	4	TRAM2	6	52370431	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	17	52370431	118744636	77	102156			2	80		3	3	107	G		1.75745e-07
MYO6	4646	broad.mit.edu	37	chr6	76623792	76623792	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatagctcagcaaaaccCagcagctcagattcctgcca	7	13	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76623792	T	T	76623792	3	4	104	1	0	0	0	0	1	0	0	0	10175	594	21	4	3582	4	MYO6	6	76623792	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	24253361	76623792	94491275	78	102157											
EPHA7	2045	broad.mit.edu	37	chr6	93956748	93956748	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattactgatttaggttcaAttataataaaccaaatttcc	3	6	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93956748	G	G	93956748	1	3	104	0	1	0	0	0	0	0	0	0	5214	116	4	5		5	EPHA7	6	93956748	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	17332956	93956748	77158319	79	102158											
UTRN	7402	broad.mit.edu	37	chr6	145124171	145124171	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcttttgttttctctaGgtatagaagccttaagcatt	6	6	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145124171	T	T	145124171	5	4	104	1	0	0	0	0	0	0	1	0	17230	1014	35	2	9499	2	UTRN	6	145124171	Splice_Site	SNP	G	TCGA-38-6178-01A-11D-1753-08	51167423	145124171	25990896	80	102159											
FAM126A	84668	broad.mit.edu	37	chr7	23023500	23023500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctttatatctatttcacAataaaaaattaaaaatcaat	0	8	3	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23023500	T	T	23023500	1	4	104	0	1	0	0	0	0	0	0	0	5475	145	5	5		5	FAM126A	7	23023500	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08		23023500	136115163	81	102160											
FKBP9	11328	broad.mit.edu	37	chr7	33044747	33044747	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcctggcgttcatggCggctgaactcatggtctttc	12	13	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33044747	T	T	33044747	1	4	104	0	1	0	0	0	0	0	0	0	5972	783	27	4		4	FKBP9	7	33044747	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	10021247	33044747	126093916	82	102161											
SFRP4	6424	broad.mit.edu	37	chr7	37953843	37953843	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtttttgctgagatacgtTgccaaagttggcttcacctt	9	8	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37953843	A	A	37953843	2	1	104	1	0	0	0	0	0	0	0	1	14276	1799	63	5		5	SFRP4	7	37953843	Silent	SNP	T	TCGA-38-6178-01A-11D-1753-08	4909096	37953843	121184820	83	102162											
GLI3	2737	broad.mit.edu	37	chr7	42262693	42262693	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagagaacacagaaatgactCcaggctgggctgctggtaat	12	9	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42262693	G	G	42262693	1	3	104	0	1	0	0	0	0	0	0	0	6503	870	30	4		4	GLI3	7	42262693	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	4308850	42262693	116875970	84	102163											
HECW1	23072	broad.mit.edu	37	chr7	43360276	43360276	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctggactataaaaaccgtgGagtcaatggttctcatcggg	11	8	3	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43360276	A	A	43360276	3	1	104	1	0	0	0	0	1	0	0	0	7109	1174	41	4	405	4	HECW1	7	43360276	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	1097583	43360276	115778387	85	102164											
HECW1	23072	broad.mit.edu	37	chr7	43360301	43360301	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatggttctcatcggggccaGatcatctggaagatcgatgc	12	9	3	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43360301	A	A	43360301	2	1	104	1	0	0	0	0	0	0	0	1	7109	933	33	4		4	HECW1	7	43360301	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	25	43360301	115778362	86	102165											
EGFR	1956	broad.mit.edu	37	chr7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-													aaaattcccgtcgctatcaaGgaattaagagaagcaacatc					rs121913421		TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242479	-	-	55242465	7	5	104	1	0	1	0	1	0	0	0	0	5007	991	35	0	2573	0	EGFR	7	55242465	In_Frame_Del	DEL	GGAATTAAGAGAAGC	TCGA-38-6178-01A-11D-1753-08	11882164	55242465	103896198	87	102166											
CROT	54677	broad.mit.edu	37	chr7	87011405	87011405	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagggttcagagaaggtaCgagatataccacttccagaa	10	8	2	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87011405	T	T	87011405	4	4	104	1	0	0	0	0	0	1	0	0	3926	528	19	4	1204	4	CROT	7	87011405	Nonsense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	31768940	87011405	72127258	88	102167											
PTPRZ1	5803	broad.mit.edu	37	chr7	121616944	121616944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctttcttcaggattctgCtttggatggataagaatgtt	9	5	4	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121616944	A	A	121616944	1	1	104	0	1	0	0	0	0	0	0	0	12922	812	28	3		3	PTPRZ1	7	121616944	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	34605539	121616944	37521719	89	102168											
AKR1B10	57016	broad.mit.edu	37	chr7	134216574	134216574	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttgtggtgggttagatgagGatgcaaatcaaaaagcaggg	15	4	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134216574	C	C	134216574	1	2	104	0	1	0	0	0	0	0	0	0	467	1189	41	4		4	AKR1B10	7	134216574	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	12599630	134216574	24922089	90	102169											
UBN2	254048	broad.mit.edu	37	chr7	138968931	138968931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatccccaagtagttccagtCcaaatgcactagttgcccag	7	13	0	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138968931	A	A	138968931	3	1	104	1	0	0	0	0	1	0	0	0	17019	855	30	3	3338	3	UBN2	7	138968931	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	4752357	138968931	20169732	91	102170											
SLC37A3	84255	broad.mit.edu	37	chr7	140055426	140055427	+	Intron	DEL	AG	-	-													agcaatacacatgtgcacacAgagagagagagagagcacca							TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140055427	-	-	140055426	6	5	104	0	1	1	0	1	0	0	0	0	14713	203	7	0		0	SLC37A3	7	140055426	Intron	DEL	AG	TCGA-38-6178-01A-11D-1753-08	1086495	140055426	19083237	92	102171											
CSMD1	64478	broad.mit.edu	37	chr8	3224649	3224649	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaacaggcctgccttgatcGtatgaggcaacaccgacccg	10	14	0	2	rs147113316	by1000genomes	TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3224649	A	A	3224649	3	1	104	1	0	0	0	0	1	0	0	0	3978	1145	40	4	7878	4	CSMD1	8	3224649	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08		3224649	143139373	93	102172											
PRKDC	5591	broad.mit.edu	37	chr8	48689545	48689545	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcattttctgttcaaaattCtagaagaaaagaacatgatt	6	5	3	4			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48689545	G	G	48689545	5	3	104	1	0	0	0	0	0	0	1	0	12627	927	32	4	352	4	PRKDC	8	48689545	Splice_Site	SNP	C	TCGA-38-6178-01A-11D-1753-08	45464896	48689545	97674477	94	102173											
SNTG1	54212	broad.mit.edu	37	chr8	51362326	51362326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccagccatttctttaaGgcattgtttttgaagtgtga	9	6	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51362326	T	T	51362326	1	4	104	0	1	0	0	0	0	0	0	0	14988	1015	35	2		2	SNTG1	8	51362326	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	2672781	51362326	95001696	95	102174											
UBXN2B	137886	broad.mit.edu	37	chr8	59338370	59338370	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgtcaaagaatcataccGttctcctccaccaacatcgt	4	14	4	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59338370	A	A	59338370	1	1	104	0	1	0	0	0	0	0	0	0	17041	1160	40	4		4	UBXN2B	8	59338370	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	7976044	59338370	87025652	96	102175											
ZFAT	57623	broad.mit.edu	37	chr8	135524674	135524674	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattcattcagcatgtctagGaaagacagttctgagatggc	10	8	4	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135524674	A	A	135524674	1	1	104	0	1	0	0	0	0	0	0	0	17758	1189	41	4		4	ZFAT	8	135524674	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	76186304	135524674	10839348	97	102176											
EEF1D	1936	broad.mit.edu	37	chr8	144662613	144662613	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggggagggtcacaggctGagccggctaggcgggcacca	19	11	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144662613	A	A	144662613	1	1	104	0	1	0	0	0	0	0	0	0	4966	1305	45	4		4	EEF1D	8	144662613	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	9137939	144662613	1701409	98	102177											
CDKN2A	1029	broad.mit.edu	37	chr9	21971025	21971025	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaggtccacgggcagacgGccccaggcatcgcgcacgtc	14	17	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21971025	A	A	21971025	2	1	104	1	0	0	0	0	0	0	0	1	3191	1203	42	4		4	CDKN2A	9	21971025	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08		21971025	119242406	99	102178											
VPS13A	23230	broad.mit.edu	37	chr9	79955320	79955320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttaatttttttttcttagGttggtgtcactatagacctg	8	5	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79955320	T	T	79955320	3	4	104	1	0	0	0	0	1	0	0	0	17316	1275	44	3	7078	3	VPS13A	9	79955320	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	57984295	79955320	61258111	100	102179											
C9orf125	84302	broad.mit.edu	37	chr9	104238197	104238197	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaagttgtaccggagaCtggagaagagcccgatgtgt	15	6	0	4			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104238197	T	T	104238197	3	4	104	1	0	0	0	0	1	0	0	0	2480	565	20	4	37	4	C9orf125	9	104238197	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	24282877	104238197	36975234	101	102180											
OR1B1	347169	broad.mit.edu	37	chr9	125391044	125391044	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacaaatgatggtgccgtaGaggaaaccaaccatggtgag	12	8	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125391044	T	T	125391044	2	4	104	1	0	0	0	0	0	0	0	1	11045	929	33	3		3	OR1B1	9	125391044	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	21152847	125391044	15822387	102	102181											
ENG	2022	broad.mit.edu	37	chr9	130588861	130588861	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatggggcccctctcagCtgcccactcaaggatctggg	14	13	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130588861	G	G	130588861	3	3	104	1	0	0	0	0	1	0	0	0	5159	797	28	4	1599	4	ENG	9	130588861	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	5197817	130588861	10624570	103	102182											
DOLPP1	57171	broad.mit.edu	37	chr9	131846944	131846944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattctgttctctgtcttgcCaggtgatctctctggccacc	9	13	5	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131846944	T	T	131846944	1	4	104	0	1	0	0	0	0	0	0	0	4744	609	21	4		4	DOLPP1	9	131846944	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	1258083	131846944	9366487	104	102183											
UCMA	221044	broad.mit.edu	37	chr10	13275789	13275789	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacagatacactggttcCctctctcagcactgcaggac	8	16	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13275789	A	A	13275789	4	1	104	1	0	0	0	0	0	1	0	0	17052	632	22	2	362	2	UCMA	10	13275789	Nonsense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08		13275789	122258958	105	102184											
CREM	1390	broad.mit.edu	37	chr10	35495700	35495700	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataatgctcagaataattatCttaaacattacaagatcacc	3	8	3	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35495700	A	A	35495700	1	1	104	0	1	0	0	0	0	0	0	0	3900	928	32	3		3	CREM	10	35495700	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	22219911	35495700	100039047	106	102185			3	81		4	4	155	C		1.059275e-10
CREM	1390	broad.mit.edu	37	chr10	35495734	35495734	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatcacctcttatgagatgtCaaaagtatatcatttccaga	6	8	4	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35495734	T	T	35495734	1	4	104	0	1	0	0	0	0	0	0	0	3900	841	29	4		4	CREM	10	35495734	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	34	35495734	100039013	107	102186			3	81		4	4	155	C		1.059275e-10
CREM	1390	broad.mit.edu	37	chr10	35495745	35495745	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgagatgtcaaaagtatatCatttccagatcagttttatg	7	5	3	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35495745	T	T	35495745	1	4	104	0	1	0	0	0	0	0	0	0	3900	841	29	4		4	CREM	10	35495745	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	11	35495745	100039002	108	102187			3	81		4	4	155	C		1.059275e-10
CREM	1390	broad.mit.edu	37	chr10	35495854	35495854	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacatgccaacttaccagatCcgagctcctactgctgcttt	7	14	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35495854	T	T	35495854	2	4	104	1	0	0	0	0	0	0	0	1	3900	845	30	4		4	CREM	10	35495854	Silent	SNP	C	TCGA-38-6178-01A-11D-1753-08	109	35495854	100038893	109	102188			3	81		4	4	155	C		1.059275e-10
JAKMIP3	282973	broad.mit.edu	37	chr10	133967359	133967359	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccttcaccgaggttctgCggctcggtgctgcaggtggg	16	12	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133967359	T	T	133967359	1	4	104	0	1	0	0	0	0	0	0	0	8012	783	27	4		4	JAKMIP3	10	133967359	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	98471505	133967359	1567388	110	102189											
C11orf16	56673	broad.mit.edu	37	chr11	8942930	8942930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttctgtgttcagcttccCctggcggggtccgcggtggc	15	13	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8942930	T	T	8942930	3	4	104	1	0	0	0	0	1	0	0	0	1642	623	22	4	70	4	C11orf16	11	8942930	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08		8942930	126063586	111	102190											
NELL1	4745	broad.mit.edu	37	chr11	21555882	21555882	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggttagtgtcaaaagaaaTtaatatcctggtgggcttgt	11	4	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21555882	G	G	21555882	1	3	104	0	1	0	0	0	0	0	0	0	10428	1508	52	5		5	NELL1	11	21555882	Intron	SNP	T	TCGA-38-6178-01A-11D-1753-08	12612952	21555882	113450634	112	102191											
DPF2	5977	broad.mit.edu	37	chr11	65113156	65113156	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgtggaaaacgttacaaGaaccgaccaggcctcagtta	10	9	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65113156	A	A	65113156	2	1	104	1	0	0	0	0	0	0	0	1	4757	933	33	4		4	DPF2	11	65113156	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	43557274	65113156	69893360	113	102192											
MAP3K11	4296	broad.mit.edu	37	chr11	65375118	65375118	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgattcctcgcaccttttcCttggctcgcagctcgtcgaa	8	14	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65375118	G	G	65375118	3	3	104	1	0	0	0	0	1	0	0	0	9337	680	24	4	1332	4	MAP3K11	11	65375118	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	261962	65375118	69631398	114	102193											
BRMS1	25855	broad.mit.edu	37	chr11	66106279	66106279	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgggggtcaaggaagcCtagtggaggtggcaggtgac	21	5	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66106279	G	G	66106279	1	3	104	0	1	0	0	0	0	0	0	0	1525	696	24	4		4	BRMS1	11	66106279	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	731161	66106279	68900237	115	102194											
ADRBK1	156	broad.mit.edu	37	chr11	67050477	67050477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggagcatgactgctgggCgagctaggatgctgtgcccc	16	10	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67050477	A	A	67050477	1	1	104	0	1	0	0	0	0	0	0	0	343	783	27	3		3	ADRBK1	11	67050477	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	944198	67050477	67956039	116	102195											
ACAT1	38	broad.mit.edu	37	chr11	108010912	108010912	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagctgggaaatttggaaatGaagttattcctgtcacagtt	10	5	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108010912	T	T	108010912	4	4	104	1	0	0	0	0	0	1	0	0	121	1291	45	3	726	3	ACAT1	11	108010912	Nonsense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	40960435	108010912	26995604	117	102196											
DPAGT1	1798	broad.mit.edu	37	chr11	118971727	118971727	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccccacgaacccacttaCttcatggtgggggaatgcct	9	15	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118971727	A	A	118971727	5	1	104	1	0	0	0	0	0	0	1	0	4750	579	20	3	975	3	DPAGT1	11	118971727	Splice_Site	SNP	C	TCGA-38-6178-01A-11D-1753-08	10960815	118971727	16034789	118	102197											
SCN3B	55800	broad.mit.edu	37	chr11	123508984	123508984	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaggtgaggaagaccagaAggatgtacatcatgatttct	11	6	2	4			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123508984	G	G	123508984	3	3	104	1	0	0	0	0	1	0	0	0	14032	72	3	5	161	5	SCN3B	11	123508984	Missense_Mutation	SNP	A	TCGA-38-6178-01A-11D-1753-08	4537257	123508984	11497532	119	102198											
ANO2	57101	broad.mit.edu	37	chr12	5685180	5685180	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtgatcgcaatgacaaaaGcctgagggacagaaccataa	11	8	0	4			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5685180	C	C	5685180	3	2	104	1	0	0	0	0	1	0	0	0	697	985	34	4	567	4	ANO2	12	5685180	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08		5685180	128166715	120	102199											
DDX11	1663	broad.mit.edu	37	chr12	31254036	31254036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccagccgctggaattcaCgttccagaaaagagagctgc	10	12	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31254036	A	A	31254036	3	1	104	1	0	0	0	0	1	0	0	0	4376	536	19	3	2098	3	DDX11	12	31254036	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	25568856	31254036	102597859	121	102200											
IRAK4	51135	broad.mit.edu	37	chr12	44180500	44180500	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggttcaacagctgctgcaAgagatgacagcttcttaaaa	9	8	2	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44180500	G	G	44180500	2	3	104	1	0	0	0	0	0	0	0	1	7895	69	3	5		5	IRAK4	12	44180500	Silent	SNP	A	TCGA-38-6178-01A-11D-1753-08	12926464	44180500	89671395	122	102201											
TMEM117	84216	broad.mit.edu	37	chr12	44403374	44403374	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggctgggtttctttgtgAgtattccagcctagctgttc	11	9	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44403374	G	G	44403374	1	3	104	0	1	0	0	0	0	0	0	0	16154	319	11	5		5	TMEM117	12	44403374	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	222874	44403374	89448521	123	102202											
SLC16A7	9194	broad.mit.edu	37	chr12	60168962	60168962	+	Frame_Shift_Del	DEL	G	-	-													tggctttcgttgatatgtttGctaggccttctgtaggatta							TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60168962	-	-	60168962	7	5	104	1	0	1	0	1	0	0	0	0	14526	1319	46	0	896	0	SLC16A7	12	60168962	Frame_Shift_Del	DEL	G	TCGA-38-6178-01A-11D-1753-08	15765588	60168962	73682933	124	102203											
TSPAN19	144448	broad.mit.edu	37	chr12	85413435	85413435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcattcagaatagtccaCttggttatatcttcaggctt	8	8	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85413435	A	A	85413435	3	1	104	1	0	0	0	0	1	0	0	0	16768	564	20	3	342	3	TSPAN19	12	85413435	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	25244473	85413435	48438460	125	102204											
KDM2B	84678	broad.mit.edu	37	chr12	121881874	121881874	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttcttcctcaggtgcaCgtcgtcagactttctgcgca	9	15	4	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121881874	T	T	121881874	3	4	104	1	0	0	0	0	1	0	0	0	8195	536	19	4	1702	4	KDM2B	12	121881874	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	36468439	121881874	11970021	126	102205											
DHRS2	10202	broad.mit.edu	37	chr14	24108557	24108557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaccgggagcagctgGtggccaaggtgagggggcag	21	8	0	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24108557	T	T	24108557	3	4	104	1	0	0	0	0	1	0	0	0	4530	1261	44	3	316	3	DHRS2	14	24108557	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08		24108557	83240983	127	102206											
L2HGDH	79944	broad.mit.edu	37	chr14	50732257	50732257	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaggaattctttattaCgtaaaatacctttataatta	5	4	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50732257	T	T	50732257	1	4	104	0	1	0	0	0	0	0	0	0	8662	551	19	4		4	L2HGDH	14	50732257	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	26623700	50732257	56617283	128	102207											
CATSPERB	79820	broad.mit.edu	37	chr14	92136364	92136364	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagactagtctgtgttacaAattttagaatttcctgttac	6	6	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92136364	C	C	92136364	1	2	104	0	1	0	0	0	0	0	0	0	2717	29	1	5		5	CATSPERB	14	92136364	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	41404107	92136364	15213176	129	102208											
CHGA	1113	broad.mit.edu	37	chr14	93393922	93393922	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcctttccattctgagacAtcagaatttactgaaggagc	8	9	2	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93393922	T	T	93393922	3	4	104	1	0	0	0	0	1	0	0	0	3369	217	8	5	229	5	CHGA	14	93393922	Missense_Mutation	SNP	A	TCGA-38-6178-01A-11D-1753-08	1257558	93393922	13955618	130	102209											
PKD1	5310	broad.mit.edu	37	chr16	2147796	2147796	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgctgagaggtgcacaGtgtcttgagtccaagctgcg	15	10	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2147796	C	C	2147796	1	2	104	0	1	0	0	0	0	0	0	0	12058	1044	36	4		4	PKD1	16	2147796	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08		2147796	88206957	131	102210											
TRIM72	493829	broad.mit.edu	37	chr16	31234266	31234266	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttccgggctctgatgccaGgtaccgggagggactggctc	16	11	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31234266	C	C	31234266	3	2	104	1	0	0	0	0	1	0	0	0	16670	1014	35	4	877	4	TRIM72	16	31234266	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	29086470	31234266	59120487	132	102211											
COG4	25839	broad.mit.edu	37	chr16	70524368	70524368	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactccaatgccagactggcTgacagctgtgctccatgaag	10	13	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70524368	C	C	70524368	1	2	104	0	1	0	0	0	0	0	0	0	3692	1595	55	5		5	COG4	16	70524368	Intron	SNP	T	TCGA-38-6178-01A-11D-1753-08	39290102	70524368	19830385	133	102212											
TRPV3	162514	broad.mit.edu	37	chr17	3457869	3457869	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgtgctccccaccgcAccatcccctagtcatacctc	6	19	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3457869	C	C	3457869	1	2	104	0	1	0	0	0	0	0	0	0	16722	174	6	5		5	TRPV3	17	3457869	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08		3457869	77737341	134	102213											
TP53	7157	broad.mit.edu	37	chr17	7577090	7577090	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagattctcttcctctgtgCgccggtctctcccaggacag	11	14	3	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7577090	G	G	7577090	3	3	104	1	0	0	0	0	1	0	0	0	16505	768	27	4	438	4	TP53	17	7577090	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	4119221	7577090	73618120	135	102214											
MYH13	8735	broad.mit.edu	37	chr17	10248922	10248922	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttggccagagcacccacCgaattggtcaccttgaaaaa	9	12	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10248922	T	T	10248922	2	4	104	1	0	0	0	0	0	0	0	1	10126	639	23	4		4	MYH13	17	10248922	Silent	SNP	C	TCGA-38-6178-01A-11D-1753-08	2671832	10248922	70946288	136	102215											
MYH2	4620	broad.mit.edu	37	chr17	10433106	10433106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctataaagcacctttgttgGgtggcagaacctctatacag	10	9	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10433106	T	T	10433106	1	4	104	0	1	0	0	0	0	0	0	0	10129	1247	43	2		2	MYH2	17	10433106	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	184184	10433106	70762104	137	102216											
PRPSAP2	5636	broad.mit.edu	37	chr17	18834028	18834028	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagttttcctttaggaaaActcccgagggccaaactgga	10	10	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18834028	C	C	18834028	1	2	104	0	1	0	0	0	0	0	0	0	12688	58	2	5		5	PRPSAP2	17	18834028	3'UTR	SNP	A	TCGA-38-6178-01A-11D-1753-08	8400922	18834028	62361182	138	102217											
HSPB9	94086	broad.mit.edu	37	chr17	40275188	40275188	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcaccggaaaatgctccCgtccaacctgagtcctaccg	10	15	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40275188	T	T	40275188	3	4	104	1	0	0	0	0	1	0	0	0	7494	652	23	4	322	4	HSPB9	17	40275188	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	21441160	40275188	40920022	139	102218											
UNC13D	201294	broad.mit.edu	37	chr17	73832407	73832407	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtctcccccatccccagcGcgagtaccatacctgcaggg	10	17	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73832407	A	A	73832407	1	1	104	0	1	0	0	0	0	0	0	0	17113	1102	38	4		4	UNC13D	17	73832407	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	33557219	73832407	7362803	140	102219											
CEP76	79959	broad.mit.edu	37	chr18	12699187	12699187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtaaagatacctccgtGttggatcaatattagctgta	10	6	1	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12699187	T	T	12699187	3	4	104	1	0	0	0	0	1	0	0	0	3291	1377	48	3	1704	3	CEP76	18	12699187	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08		12699187	65378061	141	102220											
LAMA3	3909	broad.mit.edu	37	chr18	21399897	21399897	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggagagaccttcgatttgGatttgatccgctggcatttc	12	8	0	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21399897	C	C	21399897	3	2	104	1	0	0	0	0	1	0	0	0	8679	1174	41	4	2314	4	LAMA3	18	21399897	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	8700710	21399897	56677351	142	102221			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21399920	21399920	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgatccgctggcatttcctGagtttagctggagaggatat	12	7	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21399920	A	A	21399920	3	1	104	1	0	0	0	0	1	0	0	0	8679	1291	45	4	2337	4	LAMA3	18	21399920	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	23	21399920	56677328	143	102222			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21402219	21402219	+	Missense_Mutation	SNP	G	A	A													gtttcggtatttttcagaatGatgtaagaataacattgaat							TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21402219	A	A	21402219	3	1	104	1	0	0	0	0	1	0	0	0	8679	1290	45	4	2386	4	LAMA3	18	21402219	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	2299	21402219	56675029	144	102223	445	2	4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21402226	21402226	+	Missense_Mutation	SNP	G	A	A													tatttttcagaatgatgtaaGaataacattgaatgtaggga							TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21402226	A	A	21402226	3	1	104	1	0	0	0	0	1	0	0	0	8679	942	33	4	2393	4	LAMA3	18	21402226	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	7	21402226	56675022	145	102224	445	2	4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21402295	21402295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgagatacgttaaccctgGaactgaagcagtatctggcc	10	10	2	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21402295	A	A	21402295	3	1	104	1	0	0	0	0	1	0	0	0	8679	1174	41	4	2462	4	LAMA3	18	21402295	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	69	21402295	56674953	146	102225			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21402353	21402353	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctggggtaaggcacgtagGtaaaatgtcaagcctctttt	11	8	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21402353	C	C	21402353	1	2	104	0	1	0	0	0	0	0	0	0	8679	1276	44	4		4	LAMA3	18	21402353	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	58	21402353	56674895	147	102226			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21404248	21404248	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcatagtacaatttttaaaGataagatcagtaaatctgat	6	4	2	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21404248	A	A	21404248	1	1	104	0	1	0	0	0	0	0	0	0	8679	957	33	4		4	LAMA3	18	21404248	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	1895	21404248	56673000	148	102227			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21404467	21404467	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccctggaaatggttttgcaGacccattttcaatcacacca	6	12	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21404467	A	A	21404467	3	1	104	1	0	0	0	0	1	0	0	0	8679	942	33	4	2591	4	LAMA3	18	21404467	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	219	21404467	56672781	149	102228			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21404597	21404597	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagaagtggttccatccaaGactacaatccacagcgacca	7	13	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21404597	A	A	21404597	1	1	104	0	1	0	0	0	0	0	0	0	8679	957	33	4		4	LAMA3	18	21404597	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	130	21404597	56672651	150	102229			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21407149	21407149	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtagcagacacttaataaGagtttattgaaggatgatga	10	3	0	5			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21407149	C	C	21407149	1	2	104	0	1	0	0	0	0	0	0	0	8679	957	33	4		4	LAMA3	18	21407149	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	2552	21407149	56670099	151	102230			4	82		11	10	7320	N	G	8.91766e-19
LAMA3	3909	broad.mit.edu	37	chr18	21407216	21407216	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtctttggggatgtactttGatattccgtttgatgttctc	10	6	2	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21407216	C	C	21407216	1	2	104	0	1	0	0	0	0	0	0	0	8679	1305	45	4		4	LAMA3	18	21407216	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	67	21407216	56670032	152	102231			4	82		11	10	7320	N	G	8.91766e-19
EMR1	2015	broad.mit.edu	37	chr19	6926419	6926419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctgcactaccttttcCttgcctgcttcttctggatg	7	14	2	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6926419	A	A	6926419	3	1	104	1	0	0	0	0	1	0	0	0	5146	681	24	2	2091	2	EMR1	19	6926419	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08		6926419	52202564	153	102232											
FXYD5	53827	broad.mit.edu	37	chr19	35651728	35651728	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcatgggactgagagcagCagcctacgatttttgtttaa	11	7	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35651728	T	T	35651728	1	4	104	0	1	0	0	0	0	0	0	0	6181	725	25	4		4	FXYD5	19	35651728	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	28725309	35651728	23477255	154	102233											
CLIP3	25999	broad.mit.edu	37	chr19	36518178	36518178	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgaagaaggtgaaagctggGgtggcaagaggtccaaggtc	17	6	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36518178	A	A	36518178	1	1	104	0	1	0	0	0	0	0	0	0	3566	1247	43	4		4	CLIP3	19	36518178	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	866450	36518178	22610805	155	102234											
QPCTL	54814	broad.mit.edu	37	chr19	46202151	46202151	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctggttccatcggctgagGagcattggtaagggtgaatg	16	7	0	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46202151	A	A	46202151	2	1	104	1	0	0	0	0	0	0	0	1	12983	1165	41	4		4	QPCTL	19	46202151	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	9683973	46202151	12926832	156	102235											
LILRB3	11025	broad.mit.edu	37	chr19	54722715	54722715	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctttctctggtctgggtgAagatggacagagtctcagcc	13	9	4	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54722715	T	T	54722715	1	4	104	0	1	0	0	0	0	0	0	0	8864	261	9	5		5	LILRB3	19	54722715	Intron	SNP	A	TCGA-38-6178-01A-11D-1753-08	8520564	54722715	4406268	157	102236											
EPN1	29924	broad.mit.edu	37	chr19	56204296	56204296	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccccagggaggggctgagCagaacatcctgaccccacag	14	14	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56204296	G	G	56204296	1	3	104	0	1	0	0	0	0	0	0	0	5227	725	25	4		4	EPN1	19	56204296	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	1481581	56204296	2924687	158	102237											
PEG3	5178	broad.mit.edu	37	chr19	57328566	57328566	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcactaccacattcaaagGgcttcttcctgggacagcct	7	14	3	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57328566	C	C	57328566	3	2	104	1	0	0	0	0	1	0	0	0	11814	1232	43	4	3526	4	PEG3	19	57328566	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	1124270	57328566	1800417	159	102238											
ZNF549	256051	broad.mit.edu	37	chr19	58048682	58048682	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccttccatcccaaatgctCattcttgtgagatgtgtatc	7	11	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58048682	T	T	58048682	3	4	104	1	0	0	0	0	1	0	0	0	18108	826	29	4	281	4	ZNF549	19	58048682	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	720116	58048682	1080301	160	102239											
SNRPB	6628	broad.mit.edu	37	chr20	2451273	2451273	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcctccccgatcagtcGcggttcccactccacaacag	8	18	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2451273	A	A	2451273	1	1	104	0	1	0	0	0	0	0	0	0	14975	1102	38	4		4	SNRPB	20	2451273	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08		2451273	60574247	161	102240											
NCOA6	23054	broad.mit.edu	37	chr20	33345399	33345399	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagtttgtgtgggcttgTgaggcttgctggctgccaaa	16	6	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33345399	C	C	33345399	2	2	104	1	0	0	0	0	0	0	0	1	10328	1683	59	5		5	NCOA6	20	33345399	Silent	SNP	T	TCGA-38-6178-01A-11D-1753-08	30894126	33345399	29680121	162	102241											
TGM2	7052	broad.mit.edu	37	chr20	36768038	36768038	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatggcacgaactggaactGggccacagcagtacgtccct	12	12	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36768038	C	C	36768038	3	2	104	1	0	0	0	0	1	0	0	0	15953	1348	47	4	997	4	TGM2	20	36768038	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	3422639	36768038	26257482	163	102242											
CYP24A1	1591	broad.mit.edu	37	chr20	52774169	52774169	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttaaaataaccagaagaGacctttgaatggcaaaattg	7	5	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52774169	A	A	52774169	1	1	104	0	1	0	0	0	0	0	0	0	4187	957	33	4		4	CYP24A1	20	52774169	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	16006131	52774169	10251351	164	102243											
GTPBP5	26164	broad.mit.edu	37	chr20	60770918	60770918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaacggaggcgctgggGcaagctgcttccacagtgag	17	9	0	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60770918	T	T	60770918	3	4	104	1	0	0	0	0	1	0	0	0	6948	1203	42	3	271	3	GTPBP5	20	60770918	Missense_Mutation	SNP	G	TCGA-38-6178-01A-11D-1753-08	7996749	60770918	2254602	165	102244											
TCEA2	6919	broad.mit.edu	37	chr20	62701744	62701744	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggggccataacaccccagCagatcgctgtgatgacctca	11	13	1	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62701744	T	T	62701744	4	4	104	1	0	0	0	0	0	1	0	0	15790	711	25	4	675	4	TCEA2	20	62701744	Nonsense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08	1930826	62701744	323776	166	102245											
MYT1	4661	broad.mit.edu	37	chr20	62848687	62848687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgttgctcctgggagggGcaggattcaaggggcagtgg	19	7	1	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62848687	T	T	62848687	1	4	104	0	1	0	0	0	0	0	0	0	10200	1218	42	3		3	MYT1	20	62848687	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	146943	62848687	176833	167	102246											
USP25	29761	broad.mit.edu	37	chr21	17246919	17246919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccagactcatatataaGtgattgactccataaactct	4	9	2	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17246919	T	T	17246919	1	4	104	0	1	0	0	0	0	0	0	0	17182	1044	36	3		3	USP25	21	17246919	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08		17246919	30882976	168	102247											
COL18A1	80781	broad.mit.edu	37	chr21	46888721	46888721	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaacccccactgtgccgtcGctgggggactggagcagctg	15	13	0	0			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46888721	A	A	46888721	1	1	104	0	1	0	0	0	0	0	0	0	3707	1102	38	4		4	COL18A1	21	46888721	Intron	SNP	G	TCGA-38-6178-01A-11D-1753-08	29641802	46888721	1241174	169	102248											
ATP6V1E1	529	broad.mit.edu	37	chr22	18095691	18095691	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtaacaacttaaaactgTagagaaagaattcgaactcc	6	7	0	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18095691	G	G	18095691	1	3	104	0	1	0	0	0	0	0	0	0	1187	1653	57	5		5	ATP6V1E1	22	18095691	Intron	SNP	T	TCGA-38-6178-01A-11D-1753-08		18095691	33208875	170	102249											
PIWIL3	440822	broad.mit.edu	37	chr22	25147327	25147327	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaggtttacaatttaaaTatatttaaagaaatacagtt	5	2	0	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25147327	C	C	25147327	1	2	104	0	1	0	0	0	0	0	0	0	12054	1421	49	5		5	PIWIL3	22	25147327	Intron	SNP	T	TCGA-38-6178-01A-11D-1753-08	7051636	25147327	26157239	171	102250											
MYO18B	84700	broad.mit.edu	37	chr22	26423044	26423044	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagaaaactgagctctccGaccacacccagggacatgct	11	13	1	2			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26423044	T	T	26423044	2	4	104	1	0	0	0	0	0	0	0	1	10160	1045	37	3		3	MYO18B	22	26423044	Silent	SNP	G	TCGA-38-6178-01A-11D-1753-08	1275717	26423044	24881522	172	102251											
DMC1	11144	broad.mit.edu	37	chr22	38964140	38964140	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcttctaaaaatagtagCtaacagggaaggaacttgat	9	6	2	1			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38964140	T	T	38964140	1	4	104	0	1	0	0	0	0	0	0	0	4619	812	28	4		4	DMC1	22	38964140	Intron	SNP	C	TCGA-38-6178-01A-11D-1753-08	12541096	38964140	12340426	173	102252											
CXorf58	254158	broad.mit.edu	37	chrX	23933856	23933856	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatactgaagaaagtggccCccttagaggctaagcttatt	9	8	0	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23933856	G	G	23933856	3	3	104	1	0	0	0	0	1	0	0	0	4147	623	22	4	266	4	CXorf58	23	23933856	Missense_Mutation	SNP	C	TCGA-38-6178-01A-11D-1753-08		23933856	131336704	174	102253											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105010969	105010969	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgtagcatacatggaagAtctcacaagatatgttgaac	8	6	1	3			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105010969	T	T	105010969	3	4	104	1	0	0	0	0	1	0	0	0	7732	333	12	5	1414	5	IL1RAPL2	23	105010969	Missense_Mutation	SNP	A	TCGA-38-6178-01A-11D-1753-08	81077113	105010969	50259591	175	102254											
PTCHD2	57540	broad.mit.edu	37	chr1	11562047	11562047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggctcctactcctactGctcgccccccagctcgctca	8	20	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11562047	T	T	11562047	3	4	105	1	0	0	0	0	1	0	0	0	12839	1319	46	3	1000	3	PTCHD2	1	11562047	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08		11562047	237688574	1	102255											
PTCHD2	57540	broad.mit.edu	37	chr1	11562977	11562977	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaagtccagctgcatcctGtgtgtgcatgcccatttttg	11	10	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11562977	C	C	11562977	1	2	105	0	1	0	0	0	0	0	0	0	12839	1392	48	4		4	PTCHD2	1	11562977	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	930	11562977	237687644	2	102256											
DDI2	84301	broad.mit.edu	37	chr1	15978402	15978403	+	Intron	DNP	GG	TT	TT													aggatgcaggtatttgggatGgccaaactcttcaatacttg							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15978403	TT	TT	15978402	1	4	105	0	1	0	0	0	0	0	0	0	4362	1363	47	2		2	DDI2	1	15978402	Intron	DNP	GG	TCGA-44-2655-01A-01D-1553-08	4415425	15978402	233272219	3	102257											
PADI1	29943	broad.mit.edu	37	chr1	17563741	17563741	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccctggtggcagatctgatGatgactcaggcaaggcctga	13	11	2	5			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17563741	T	T	17563741	1	4	105	0	1	0	0	0	0	0	0	0	11471	1305	45	3		3	PADI1	1	17563741	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1585339	17563741	231686880	4	102258											
PADI4	23569	broad.mit.edu	37	chr1	17664702	17664702	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttataaagcccttttgCccacatagcctgaacctggt	6	12	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17664702	T	T	17664702	1	4	105	0	1	0	0	0	0	0	0	0	11474	754	26	4		4	PADI4	1	17664702	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	100961	17664702	231585919	5	102259											
UBXN10	127733	broad.mit.edu	37	chr1	20517245	20517245	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgcgctcatcatatacCatctccgcctccagccattc	7	16	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20517245	T	T	20517245	3	4	105	1	0	0	0	0	1	0	0	0	17038	594	21	4	193	4	UBXN10	1	20517245	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	2852543	20517245	228733376	6	102260											
EIF4G3	8672	broad.mit.edu	37	chr1	21212859	21212859	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatcttcgtgacccaacattCaacaactaggacaagaatat	6	10	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21212859	A	A	21212859	3	1	105	1	0	0	0	0	1	0	0	0	5080	825	29	3	2742	3	EIF4G3	1	21212859	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	695614	21212859	228037762	7	102261											
CATSPER4	378807	broad.mit.edu	37	chr1	26524436	26524436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaggggcacccctgacagGctctgccacagggcgcttcg	13	16	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26524436	T	T	26524436	1	4	105	0	1	0	0	0	0	0	0	0	2716	1218	42	3		3	CATSPER4	1	26524436	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	5311577	26524436	222726185	8	102262											
MAP3K6	9064	broad.mit.edu	37	chr1	27687193	27687193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccgcgctgccacgcaccgCacctgctgtcccgctccggg	11	21	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27687193	A	A	27687193	1	1	105	0	1	0	0	0	0	0	0	0	9346	725	25	3		3	MAP3K6	1	27687193	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1162757	27687193	221563428	9	102263											
C1orf94	84970	broad.mit.edu	37	chr1	34677938	34677938	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggacacctccaaagatgtCtgccaacccccgagaccctc	8	17	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34677938	A	A	34677938	3	1	105	1	0	0	0	0	1	0	0	0	2093	913	32	3	1674	3	C1orf94	1	34677938	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	6990745	34677938	214572683	10	102264											
C1orf94	84970	broad.mit.edu	37	chr1	34684499	34684499	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagacaaaacagcaagaccaGattcatctattggccaacac	6	12	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34684499	T	T	34684499	1	4	105	0	1	0	0	0	0	0	0	0	2093	957	33	3		3	C1orf94	1	34684499	3'UTR	SNP	G	TCGA-44-2655-01A-01D-1553-08	6561	34684499	214566122	11	102265											
MUTYH	4595	broad.mit.edu	37	chr1	45795184	45795184	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcctctccttgtcctctctCcctttccccgactctactga	3	19	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45795184	T	T	45795184	1	4	105	0	1	0	0	0	0	0	0	0	10087	870	30	4		4	MUTYH	1	45795184	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	11110685	45795184	203455437	12	102266											
MKNK1	8569	broad.mit.edu	37	chr1	47030909	47030909	+	Intron	DEL	C	-	-													atggctccgtggctgtcacaCcgcagctggttttgtcaggt							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47030909	-	-	47030909	6	5	105	0	1	1	0	1	0	0	0	0	9697	522	18	0		0	MKNK1	1	47030909	Intron	DEL	C	TCGA-44-2655-01A-01D-1553-08	1235725	47030909	202219712	13	102267											
CC2D1B	200014	broad.mit.edu	37	chr1	52821603	52821603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagggcctgtctgcccagCtgggtggtgacgggagggaa	18	10	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52821603	A	A	52821603	1	1	105	0	1	0	0	0	0	0	0	0	2753	812	28	3		3	CC2D1B	1	52821603	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	5790694	52821603	196429018	14	102268											
DAB1	1600	broad.mit.edu	37	chr1	57536492	57536492	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagaagcggatctccaaatCccaagataccgatgccggcc	11	13	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57536492	A	A	57536492	1	1	105	0	1	0	0	0	0	0	0	0	4250	870	30	3		3	DAB1	1	57536492	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4714889	57536492	191714129	15	102269											
PGM1	5236	broad.mit.edu	37	chr1	64088954	64088954	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcccttaacttgttcacaAgggacaacaacaacaaggaa	8	10	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64088954	C	C	64088954	1	2	105	0	1	0	0	0	0	0	0	0	11892	87	3	5		5	PGM1	1	64088954	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	6552462	64088954	185161667	16	102270											
DEPDC1	55635	broad.mit.edu	37	chr1	68962534	68962534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggatcctgggactcatcCctccgaccgaggtaaaactg	11	12	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68962534	A	A	68962534	1	1	105	0	1	0	0	0	0	0	0	0	4479	638	22	2		2	DEPDC1	1	68962534	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4873580	68962534	180288087	17	102271											
FUBP1	8880	broad.mit.edu	37	chr1	78430042	78430042	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatcttggaatggggacCttatgtaaaaaagactaagt	10	5	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78430042	A	A	78430042	5	1	105	1	0	0	0	0	0	0	1	0	6152	695	24	2	1137	2	FUBP1	1	78430042	Splice_Site	SNP	C	TCGA-44-2655-01A-01D-1553-08	9467508	78430042	170820579	18	102272											
COL24A1	255631	broad.mit.edu	37	chr1	86512537	86512537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaaacccttctttccacGgatcccaggaatgccctaga	6	14	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86512537	T	T	86512537	3	4	105	1	0	0	0	0	1	0	0	0	3715	1116	39	1	3419	1	COL24A1	1	86512537	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	8082495	86512537	162738084	19	102273											
CLCA4	22802	broad.mit.edu	37	chr1	87026102	87026102	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatacaactttttatgcagGttaagtgtgcaggccatggg	12	7	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87026102	A	A	87026102	1	1	105	0	1	0	0	0	0	0	0	0	3490	1276	44	4		4	CLCA4	1	87026102	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	513565	87026102	162224519	20	102274											
LPPR5	163404	broad.mit.edu	37	chr1	99418685	99418685	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggatggaaaggtttttcGggctctcatgatgagatctg	13	5	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99418685	T	T	99418685	2	4	105	1	0	0	0	0	0	0	0	1	9015	1124	39	1		1	LPPR5	1	99418685	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	12392583	99418685	149831936	21	102275											
VCAM1	7412	broad.mit.edu	37	chr1	101186128	101186128	+	Frame_Shift_Del	DEL	C	-	-													cagcaccacaggctgtgagtCcccatttttctcttggagaa							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101186128	-	-	101186128	7	5	105	1	0	1	0	1	0	0	0	0	17264	855	30	0	167	0	VCAM1	1	101186128	Frame_Shift_Del	DEL	C	TCGA-44-2655-01A-01D-1553-08	1767443	101186128	148064493	22	102276											
KCNA2	3737	broad.mit.edu	37	chr1	111146525	111146525	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttaccaaccggatgacacGgaggatggccagtgacatgg	13	10	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111146525	A	A	111146525	3	1	105	1	0	0	0	0	1	0	0	0	8073	1116	39	4	623	4	KCNA2	1	111146525	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	9960397	111146525	138104096	23	102277											
NBPF7	343505	broad.mit.edu	37	chr1	120384102	120384102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggagttgtcatgcttatCcggagtgagaagagcctgga	15	7	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120384102	A	A	120384102	3	1	105	1	0	0	0	0	1	0	0	0	10293	855	30	3	828	3	NBPF7	1	120384102	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	9237577	120384102	128866519	24	102278											
ADAM30	11085	broad.mit.edu	37	chr1	120438759	120438759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgcttcttgccttttaaCtgcagtaggtaggacacggg	12	9	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120438759	A	A	120438759	3	1	105	1	0	0	0	0	1	0	0	0	248	564	20	3	2175	3	ADAM30	1	120438759	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	54657	120438759	128811862	25	102279											
OTUD7B	56957	broad.mit.edu	37	chr1	149919055	149919055	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaattgtaagccaccactCagaatagattcagaaggaaa	8	7	2	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149919055	T	T	149919055	1	4	105	0	1	0	0	0	0	0	0	0	11413	841	29	4		4	OTUD7B	1	149919055	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	29480296	149919055	99331566	26	102280											
THEM4	117145	broad.mit.edu	37	chr1	151847170	151847170	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgagagttgtcgatatgctCgcaggaagtatttctgtgtt	12	7	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151847170	A	A	151847170	1	1	105	0	1	0	0	0	0	0	0	0	15981	899	31	3		3	THEM4	1	151847170	3'UTR	SNP	C	TCGA-44-2655-01A-01D-1553-08	1928115	151847170	97403451	27	102281											
SEMA4A	64218	broad.mit.edu	37	chr1	156126349	156126349	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatccaggatccaggggtccCcaggctaaagaacatggtga	12	10	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156126349	G	G	156126349	3	3	105	1	0	0	0	0	1	0	0	0	14144	623	22	4	290	4	SEMA4A	1	156126349	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	4279179	156126349	93124272	28	102282											
MEF2D	4209	broad.mit.edu	37	chr1	156444816	156444816	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctcctcagatgtggcctgtCcaggggataactagcatttc	10	12	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156444816	G	G	156444816	1	3	105	0	1	0	0	0	0	0	0	0	9551	870	30	4		4	MEF2D	1	156444816	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	318467	156444816	92805805	29	102283											
FCRL1	115350	broad.mit.edu	37	chr1	157771827	157771827	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggctcctcctccagagGgggccgacctgctccccagg	14	16	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157771827	A	A	157771827	3	1	105	1	0	0	0	0	1	0	0	0	5851	1232	43	4	619	4	FCRL1	1	157771827	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1327011	157771827	91478794	30	102284											
CD1D	912	broad.mit.edu	37	chr1	158152847	158152847	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgctgacgagacatggtatCtccgagcaaccctggatgtg	12	10	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158152847	A	A	158152847	3	1	105	1	0	0	0	0	1	0	0	0	3007	913	32	3	801	3	CD1D	1	158152847	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	381020	158152847	91097774	31	102285											
OR6Y1	391112	broad.mit.edu	37	chr1	158517962	158517962	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactagtctatggttatttgTattgatagagcccaccacca	7	10	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158517962	A	A	158517962	1	1	105	0	1	0	0	0	0	0	0	0	11307	1653	57	5		5	OR6Y1	1	158517962	5'Flank	SNP	T	TCGA-44-2655-01A-01D-1553-08	365115	158517962	90732659	32	102286											
OR6K6	128371	broad.mit.edu	37	chr1	158724748	158724748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctatgttcccgcatgCgcacagaggtggcctcttat	9	13	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158724748	A	A	158724748	3	1	105	1	0	0	0	0	1	0	0	0	11298	768	27	3	145	3	OR6K6	1	158724748	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	206786	158724748	90525873	33	102287											
MNDA	4332	broad.mit.edu	37	chr1	158817840	158817841	+	Intron	DNP	CA	TT	TT													gaacctaaacaatgcccttgCatttgtaactggaagatttt							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	158817841	TT	TT	158817840	1	4	105	0	1	0	0	0	0	0	0	0	9770	725	25	4		4	MNDA	1	158817840	Intron	DNP	CA	TCGA-44-2655-01A-01D-1553-08	93092	158817840	90432781	34	102288											
IGSF8	93185	broad.mit.edu	37	chr1	160062028	160062028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggccagtggcagaggcCaggaggaaggcagagtgagg	21	6	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160062028	A	A	160062028	1	1	105	0	1	0	0	0	0	0	0	0	7674	609	21	2		2	IGSF8	1	160062028	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1244188	160062028	89188593	35	102289											
SLAMF6	114836	broad.mit.edu	37	chr1	160458828	160458828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggtgacaagtttgtgaaCaatggctgtaaaactgacaa	10	5	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160458828	A	A	160458828	1	1	105	0	1	0	0	0	0	0	0	0	14481	493	17	3		3	SLAMF6	1	160458828	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	396800	160458828	88791793	36	102290											
NIT1	4817	broad.mit.edu	37	chr1	161088936	161088937	+	Missense_Mutation	DNP	GG	TT	TT													gttcacaggcccagagccatGgctatctcctcttcctcctg					rs144963228	byFrequency	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	161088937	TT	TT	161088936	3	4	105	1	0	0	0	0	1	0	0	0	10528	1348	47	2	178	2	NIT1	1	161088936	Missense_Mutation	DNP	GG	TCGA-44-2655-01A-01D-1553-08	630108	161088936	88161685	37	102291											
DUSP27	92235	broad.mit.edu	37	chr1	167096659	167096659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcggctagctgcctggGggatgaccaagtctccatgc	13	13	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167096659	T	T	167096659	3	4	105	1	0	0	0	0	1	0	0	0	4864	1232	43	2	2309	2	DUSP27	1	167096659	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	6007723	167096659	82153962	38	102292											
TNR	7143	broad.mit.edu	37	chr1	175325510	175325510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtccattggtggcataCatggtggcagtatagtgggt	16	5	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175325510	A	A	175325510	3	1	105	1	0	0	0	0	1	0	0	0	16461	478	17	3	1045	3	TNR	1	175325510	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	8228851	175325510	73925111	39	102293											
ANGPTL1	9068	broad.mit.edu	37	chr1	178834573	178834573	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagcagctttacctcattCacaatgtttccatctacatc	3	14	4	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178834573	G	G	178834573	2	3	105	1	0	0	0	0	0	0	0	1	613	813	29	4		4	ANGPTL1	1	178834573	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	3509063	178834573	70416048	40	102294											
TDRD5	163589	broad.mit.edu	37	chr1	179562935	179562935	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttctgtagagcagacCagagcaggttctttgttgat	11	7	3	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179562935	A	A	179562935	2	1	105	1	0	0	0	0	0	0	0	1	15855	581	21	2		2	TDRD5	1	179562935	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	728362	179562935	69687686	41	102295											
FAM5C	339479	broad.mit.edu	37	chr1	190423996	190423996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagagagaacaattcagCaccagctctgcttcgccata	7	13	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190423996	A	A	190423996	3	1	105	1	0	0	0	0	1	0	0	0	5645	710	25	3	2303	3	FAM5C	1	190423996	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	10861061	190423996	58826625	42	102296											
RGS21	431704	broad.mit.edu	37	chr1	192321385	192321385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaagagtcatcctgtagCagatctgctcccaattagaa	9	9	2	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192321385	A	A	192321385	1	1	105	0	1	0	0	0	0	0	0	0	13413	725	25	3		3	RGS21	1	192321385	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1897389	192321385	56929236	43	102297											
ASPM	259266	broad.mit.edu	37	chr1	197057403	197057403	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagaggctctatttgttgTcttcagtaaaatagccaaca	7	8	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197057403	A	A	197057403	3	1	105	1	0	0	0	0	1	0	0	0	1060	1667	58	5	301	5	ASPM	1	197057403	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	4736018	197057403	52193218	44	102298											
PPP1R15B	84919	broad.mit.edu	37	chr1	204375279	204375279	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctggagtctattaaacaTtctttctctgtgttcaaatg	6	9	4	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204375279	C	C	204375279	3	2	105	1	0	0	0	0	1	0	0	0	12465	1493	52	5	62	5	PPP1R15B	1	204375279	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	7317876	204375279	44875342	45	102299											
SLC26A9	115019	broad.mit.edu	37	chr1	205897047	205897047	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacctggttcgaatccacgtCgtagccgtgcttgttggcca	11	12	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205897047	T	T	205897047	3	4	105	1	0	0	0	0	1	0	0	0	14638	884	31	4	1639	4	SLC26A9	1	205897047	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	1521768	205897047	43353574	46	102300											
USH2A	7399	broad.mit.edu	37	chr1	216380820	216380820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcaaagcaatcaataaaCagaaaagcaaactgaagtaa	6	6	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216380820	A	A	216380820	1	1	105	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	216380820	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	10483773	216380820	32869801	47	102301											
AIDA	64853	broad.mit.edu	37	chr1	222867495	222867495	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaatgtctaatgttttatCacaataatgcagaataattt	4	4	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222867495	A	A	222867495	1	1	105	0	1	0	0	0	0	0	0	0	423	841	29	3		3	AIDA	1	222867495	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	6486675	222867495	26383126	48	102302											
TRIM11	81559	broad.mit.edu	37	chr1	228584677	228584677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccgcagtgtctctaccagtCccgggaccctgcacacggtc	10	17	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228584677	A	A	228584677	3	1	105	1	0	0	0	0	1	0	0	0	16611	855	30	3	584	3	TRIM11	1	228584677	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	5717182	228584677	20665944	49	102303											
SIPA1L2	57568	broad.mit.edu	37	chr1	232574993	232574993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacgtcggcagcatcagCccactgctcggcccggctgt	13	15	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232574993	A	A	232574993	3	1	105	1	0	0	0	0	1	0	0	0	14443	739	26	3	1312	3	SIPA1L2	1	232574993	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	3990316	232574993	16675628	50	102304											
SIPA1L2	57568	broad.mit.edu	37	chr1	232596628	232596628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacttgggcctcccacgcCttaccttcggggcgagccgt	11	15	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232596628	A	A	232596628	1	1	105	0	1	0	0	0	0	0	0	0	14443	696	24	2		2	SIPA1L2	1	232596628	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	21635	232596628	16653993	51	102305											
RYR2	6262	broad.mit.edu	37	chr1	237819276	237819276	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaacccacaacctgttgaTacctcaaagtatggactctt	5	11	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237819276	A	A	237819276	3	1	105	1	0	0	0	0	1	0	0	0	13880	1403	49	5	8331	5	RYR2	1	237819276	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	5222648	237819276	11431345	52	102306											
FMN2	56776	broad.mit.edu	37	chr1	240370817	240370817	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattccccaacctcctcctcTgcagggtacagaaatgctgc	7	16	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240370817	G	G	240370817	3	3	105	1	0	0	0	0	1	0	0	0	6008	1580	55	5	2723	5	FMN2	1	240370817	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	2551541	240370817	8879804	53	102307											
AHCTF1	25909	broad.mit.edu	37	chr1	247053418	247053418	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccccaaatatctcaacaaTacatattaatattttactgt	1	9	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247053418	C	C	247053418	1	2	105	0	1	0	0	0	0	0	0	0	408	1421	49	5		5	AHCTF1	1	247053418	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	6682601	247053418	2197203	54	102308											
OR6F1	343169	broad.mit.edu	37	chr1	247875730	247875730	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccaggaggaagtactctgTgcagcctaatgagaaaacaa	11	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875730	A	A	247875730	3	1	105	1	0	0	0	0	1	0	0	0	11295	1696	59	5	602	5	OR6F1	1	247875730	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	822312	247875730	1374891	55	102309											
OR2T6	254879	broad.mit.edu	37	chr1	248551067	248551067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgattaacatagaccCtcatctccacacccccatgt	3	17	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248551067	A	A	248551067	3	1	105	1	0	0	0	0	1	0	0	0	11123	681	24	2	160	2	OR2T6	1	248551067	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	675337	248551067	699554	56	102310											
OR2T6	254879	broad.mit.edu	37	chr1	248551409	248551409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccattaccatgagtctccCgttctgtgcctctcaccaaa	5	17	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248551409	A	A	248551409	3	1	105	1	0	0	0	0	1	0	0	0	11123	652	23	1	502	1	OR2T6	1	248551409	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	342	248551409	699212	57	102311											
OR2T2	401992	broad.mit.edu	37	chr1	248616371	248616371	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacctcctgtccaaggacaaGaccatttccttcctgggctg	9	14	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248616371	T	T	248616371	3	4	105	1	0	0	0	0	1	0	0	0	11114	933	33	3	275	3	OR2T2	1	248616371	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	64962	248616371	634250	58	102312											
PQLC3	130814	broad.mit.edu	37	chr2	11312012	11312012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcttttgcttttttaacaAatcgactcgtgactttctca	4	11	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11312012	G	G	11312012	1	3	105	0	1	0	0	0	0	0	0	0	12521	29	1	5		5	PQLC3	2	11312012	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08		11312012	231887361	59	102313											
ITSN2	50618	broad.mit.edu	37	chr2	24538101	24538101	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtttggccctcctgaaacAtaagtggaagaaactatagt	9	7	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24538101	G	G	24538101	1	3	105	0	1	0	0	0	0	0	0	0	7997	232	8	5		5	ITSN2	2	24538101	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	13226089	24538101	218661272	60	102314											
DTNB	1838	broad.mit.edu	37	chr2	25656673	25656673	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaggttcactgaggcaaggTcttccttggcggtcaaaagc	12	10	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25656673	A	A	25656673	1	1	105	0	1	0	0	0	0	0	0	0	4829	1682	58	5		5	DTNB	2	25656673	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	1118572	25656673	217542700	61	102315											
C2orf39	92749	broad.mit.edu	37	chr2	26667141	26667141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgccaagcaaataaaGcagtttcaggaggagaacca	9	7	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26667141	T	T	26667141	3	4	105	1	0	0	0	0	1	0	0	0	2186	962	34	3	1114	3	C2orf39	2	26667141	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1010468	26667141	216532232	62	102316											
LTBP1	4052	broad.mit.edu	37	chr2	33488394	33488394	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatcacctcctgtgcctgTtgaagtagctcctgaagctt	8	12	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33488394	A	A	33488394	3	1	105	1	0	0	0	0	1	0	0	0	9160	1725	60	5	2665	5	LTBP1	2	33488394	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	6821253	33488394	209710979	63	102317											
MTA3	57504	broad.mit.edu	37	chr2	42934969	42934969	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgacaagtatttttaaaaTgtttgattattttgtgttga	7	2	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42934969	C	C	42934969	1	2	105	0	1	0	0	0	0	0	0	0	10004	1479	51	5		5	MTA3	2	42934969	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	9446575	42934969	200264404	64	102318											
SRBD1	55133	broad.mit.edu	37	chr2	45801726	45801726	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtgtgacccttaacagcatGagtccataaagcagaaaact	8	10	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45801726	A	A	45801726	1	1	105	0	1	0	0	0	0	0	0	0	15251	1305	45	4		4	SRBD1	2	45801726	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2866757	45801726	197397647	65	102319											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48818791	48818791	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgattttttttccctcgaGgtctagatcatccccattgt	6	10	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48818791	T	T	48818791	5	4	105	1	0	0	0	0	0	0	1	0	15435	1014	35	2	1936	2	STON1-GTF2A1L	2	48818791	Splice_Site	SNP	G	TCGA-44-2655-01A-01D-1553-08	3017065	48818791	194380582	66	102320											
CCDC88A	55704	broad.mit.edu	37	chr2	55563913	55563913	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattctgacaattctgaagActttgcttttcttgaacaat	5	7	3	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55563913	G	G	55563913	2	3	105	1	0	0	0	0	0	0	0	1	2891	272	10	5		5	CCDC88A	2	55563913	Silent	SNP	A	TCGA-44-2655-01A-01D-1553-08	6745122	55563913	187635460	67	102321											
SNRNP200	23020	broad.mit.edu	37	chr2	96954407	96954407	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactccgctctcacctgtgtGacatacaccatgtcagccat	6	15	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96954407	A	A	96954407	2	1	105	1	0	0	0	0	0	0	0	1	14966	1277	45	4		4	SNRNP200	2	96954407	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	41390494	96954407	146244966	68	102322											
GCC2	9648	broad.mit.edu	37	chr2	109113750	109113750	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctggctaatttctttgtaAttttagtagagacagggttt	10	5	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109113750	T	T	109113750	1	4	105	0	1	0	0	0	0	0	0	0	6348	116	4	5		5	GCC2	2	109113750	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	12159343	109113750	134085623	69	102323											
SEPT10	151011	broad.mit.edu	37	chr2	110303922	110303922	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagcgcaacacagaataaccTacacagtcaaaatctttctg	5	11	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110303922	A	A	110303922	1	1	105	0	1	0	0	0	0	0	0	0	14173	1537	53	5		5	SEPT10	2	110303922	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	1190172	110303922	132895451	70	102324											
YSK4	80122	broad.mit.edu	37	chr2	135740865	135740865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagtaacatattcagctGttgaaggaagatatttcttt	7	6	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135740865	T	T	135740865	1	4	105	0	1	0	0	0	0	0	0	0	17622	1392	48	3		3	YSK4	2	135740865	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	25436943	135740865	107458508	71	102325											
GALNT13	114805	broad.mit.edu	37	chr2	155306968	155306968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaccaatgtctcgatgaaCcttctgaagaagacaaaatg	8	8	2	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155306968	A	A	155306968	3	1	105	1	0	0	0	0	1	0	0	0	6273	507	18	3	1618	3	GALNT13	2	155306968	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	19566103	155306968	87892405	72	102326											
SCN3A	6328	broad.mit.edu	37	chr2	165969467	165969467	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatccataagcaacccatttGagaagcatttccagaatgaa	6	9	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165969467	T	T	165969467	2	4	105	1	0	0	0	0	0	0	0	1	14031	1277	45	3		3	SCN3A	2	165969467	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	10662499	165969467	77229906	73	102327											
OSBPL6	114880	broad.mit.edu	37	chr2	179226621	179226621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcaaaagatggggggctGgcagggaggtggctagtcat	18	5	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179226621	T	T	179226621	1	4	105	0	1	0	0	0	0	0	0	0	11375	1363	47	2		2	OSBPL6	2	179226621	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	13257154	179226621	63972752	74	102328											
ITGA4	3676	broad.mit.edu	37	chr2	182395440	182395440	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaagtgagacacttaaaatCaagtcaatgggtttgagctg	11	5	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182395440	G	G	182395440	1	3	105	0	1	0	0	0	0	0	0	0	7948	841	29	4		4	ITGA4	2	182395440	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	3168819	182395440	60803933	75	102329											
KCTD18	130535	broad.mit.edu	37	chr2	201369696	201369696	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcccctagaaaacattcAgttcaaaaatgattatagag	6	8	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201369696	C	C	201369696	1	2	105	0	1	0	0	0	0	0	0	0	8175	203	7	5		5	KCTD18	2	201369696	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	18974256	201369696	41829677	76	102330											
IHH	3549	broad.mit.edu	37	chr2	219922285	219922285	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggtgatgtccaccgcGcggccctcataatgcaggga	14	11	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219922285	A	A	219922285	2	1	105	1	0	0	0	0	0	0	0	1	7677	1074	38	4		4	IHH	2	219922285	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	18552589	219922285	23277088	77	102331											
ARMC9	80210	broad.mit.edu	37	chr2	232091519	232091519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagtaacaaaggtaaatcAtctagatttaaatttgtcta	5	5	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232091519	G	G	232091519	1	3	105	0	1	0	0	0	0	0	0	0	962	232	8	5		5	ARMC9	2	232091519	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	12169234	232091519	11107854	78	102332											
CNTN6	27255	broad.mit.edu	37	chr3	1445202	1445202	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgttcttaatacagacttGtttgcaaagaaaaaaaaaag	7	5	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1445202	T	T	1445202	1	4	105	0	1	0	0	0	0	0	0	0	3677	1392	48	3		3	CNTN6	3	1445202	3'UTR	SNP	G	TCGA-44-2655-01A-01D-1553-08		1445202	196577228	79	102333											
NUP210	23225	broad.mit.edu	37	chr3	13427851	13427851	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaggtagacgtcataggcCgggttcagaaggatgttttc	13	7	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13427851	A	A	13427851	2	1	105	1	0	0	0	0	0	0	0	1	10855	639	23	1		1	NUP210	3	13427851	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	11982649	13427851	184594579	80	102334											
ARPP21	10777	broad.mit.edu	37	chr3	35835224	35835224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggttctcaaggactgcCccagcagtcataccaacagc	9	15	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35835224	A	A	35835224	3	1	105	1	0	0	0	0	1	0	0	0	982	623	22	2	2296	2	ARPP21	3	35835224	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	22407373	35835224	162187206	81	102335											
RPL14	9045	broad.mit.edu	37	chr3	40498768	40498768	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcggtgctcacgtcggtgActcgttaccgcaggggcggt	15	11	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40498768	G	G	40498768	1	3	105	0	1	0	0	0	0	0	0	0	13672	290	10	5		5	RPL14	3	40498768	5'Flank	SNP	A	TCGA-44-2655-01A-01D-1553-08	4663544	40498768	157523662	82	102336											
HHATL	57467	broad.mit.edu	37	chr3	42739015	42739015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccgagggcactgtctgGgaggcggttggcgaacttga	16	11	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42739015	T	T	42739015	3	4	105	1	0	0	0	0	1	0	0	0	7157	1232	43	2	688	2	HHATL	3	42739015	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	2240247	42739015	155283415	83	102337											
KIF9	64147	broad.mit.edu	37	chr3	47288896	47288896	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtgtcccctccaggtacctCcgcacctgggagttgatctc	10	15	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47288896	T	T	47288896	2	4	105	1	0	0	0	0	0	0	0	1	8380	842	30	4		4	KIF9	3	47288896	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	4549881	47288896	150733534	84	102338											
PLXNB1	5364	broad.mit.edu	37	chr3	48457786	48457786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgtgttctgagacaccaCgtcctcttcccggcacctcc	8	17	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48457786	A	A	48457786	3	1	105	1	0	0	0	0	1	0	0	0	12218	536	19	3	3046	3	PLXNB1	3	48457786	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	1168890	48457786	149564644	85	102339											
FLNB	2317	broad.mit.edu	37	chr3	58110122	58110122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgctgacccaggttggggGtgaccacatcaaggcccaca	13	14	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58110122	T	T	58110122	3	4	105	1	0	0	0	0	1	0	0	0	5992	1261	44	3	3874	3	FLNB	3	58110122	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	9652336	58110122	139912308	86	102340											
ROBO1	6091	broad.mit.edu	37	chr3	79174740	79174740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcacagtagtaacagtaGttgccatttcgatcacagca	10	9	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79174740	T	T	79174740	1	4	105	0	1	0	0	0	0	0	0	0	13624	1044	36	3		3	ROBO1	3	79174740	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	21064618	79174740	118847690	87	102341											
ABI3BP	25890	broad.mit.edu	37	chr3	100594470	100594470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggtgggaaataggaggCagtaagaagctaataatgtg	17	2	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100594470	A	A	100594470	1	1	105	0	1	0	0	0	0	0	0	0	91	725	25	3		3	ABI3BP	3	100594470	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	21419730	100594470	97427960	88	102342											
TAGLN3	29114	broad.mit.edu	37	chr3	111732248	111732248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattattccctctcactttcCttgtccaggaaagcccagca	5	15	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111732248	A	A	111732248	1	1	105	0	1	0	0	0	0	0	0	0	15659	696	24	2		2	TAGLN3	3	111732248	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	11137778	111732248	86290182	89	102343											
BOC	91653	broad.mit.edu	37	chr3	112993283	112993283	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacacctcctgtatcaccCtccaaactcggcaaccctga	6	18	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112993283	A	A	112993283	2	1	105	1	0	0	0	0	0	0	0	1	1487	668	24	2		2	BOC	3	112993283	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	1261035	112993283	85029147	90	102344											
DRD3	1814	broad.mit.edu	37	chr3	113858242	113858242	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagtcggtgtcagatttGtgtctccaatttagctaaac	8	9	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113858242	A	A	113858242	1	1	105	0	1	0	0	0	0	0	0	0	4798	1392	48	4		4	DRD3	3	113858242	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	864959	113858242	84164188	91	102345											
POLQ	10721	broad.mit.edu	37	chr3	121207151	121207151	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcaactgctggtgggtatCttgattctcatttacatttg	9	7	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121207151	G	G	121207151	3	3	105	1	0	0	0	0	1	0	0	0	12303	913	32	4	3205	4	POLQ	3	121207151	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	7348909	121207151	76815279	92	102346											
IQCB1	9657	broad.mit.edu	37	chr3	121547859	121547859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaataaaggtcaaaaagcCaggaaatgttcactacctaa	8	7	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121547859	A	A	121547859	1	1	105	0	1	0	0	0	0	0	0	0	7873	609	21	2		2	IQCB1	3	121547859	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	340708	121547859	76474571	93	102347											
CASR	846	broad.mit.edu	37	chr3	122002991	122002991	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagttcctgctggttttcctCtgcaccttcatgcagattgt	8	12	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122002991	A	A	122002991	2	1	105	1	0	0	0	0	0	0	0	1	2708	900	32	3		3	CASR	3	122002991	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	455132	122002991	76019439	94	102348											
COL6A6	131873	broad.mit.edu	37	chr3	130285781	130285781	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaaggccattgagaatatCaggcagatgggtgggaatac	15	5	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130285781	A	A	130285781	2	1	105	1	0	0	0	0	0	0	0	1	3735	816	29	3		3	COL6A6	3	130285781	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	8282790	130285781	67736649	95	102349											
NEK11	79858	broad.mit.edu	37	chr3	130881250	130881250	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggaatctttgttatttatAggcaaaaaaggatccacctg	10	6	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130881250	T	T	130881250	5	4	105	1	0	0	0	0	0	0	1	0	10418	434	15	5	995	5	NEK11	3	130881250	Splice_Site	SNP	A	TCGA-44-2655-01A-01D-1553-08	595469	130881250	67141180	96	102350											
GK5	256356	broad.mit.edu	37	chr3	141900397	141900397	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaatcttccacccaattaaTggataaaagccttgcaaaac	4	12	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141900397	C	C	141900397	2	2	105	1	0	0	0	0	0	0	0	1	6486	1451	51	5		5	GK5	3	141900397	Silent	SNP	T	TCGA-44-2655-01A-01D-1553-08	11019147	141900397	56122033	97	102351											
ATR	545	broad.mit.edu	37	chr3	142253860	142253860	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaaatgtcattttgtcatCttttctttaagcctccaatc	3	10	4	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142253860	G	G	142253860	1	3	105	0	1	0	0	0	0	0	0	0	1208	928	32	4		4	ATR	3	142253860	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	353463	142253860	55768570	98	102352											
PCOLCE2	26577	broad.mit.edu	37	chr3	142606648	142606648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaagaagaaaagataatGtaatttgaaacatggtctaa	7	2	1	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142606648	T	T	142606648	1	4	105	0	1	0	0	0	0	0	0	0	11689	1392	48	3		3	PCOLCE2	3	142606648	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	352788	142606648	55415782	99	102353											
SLC9A9	285195	broad.mit.edu	37	chr3	142985602	142985602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagttcatagcctcccaggCcgaggtctccctcataaatg	9	13	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142985602	A	A	142985602	3	1	105	1	0	0	0	0	1	0	0	0	14835	739	26	3	61	3	SLC9A9	3	142985602	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	378954	142985602	55036828	100	102354											
SERPINI2	5276	broad.mit.edu	37	chr3	167164213	167164213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcataataaacagaaatgGatgatttgctataaattggc	7	5	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167164213	T	T	167164213	3	4	105	1	0	0	0	0	1	0	0	0	14232	1174	41	3	117	3	SERPINI2	3	167164213	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	24178611	167164213	30858217	101	102355											
MECOM	2122	broad.mit.edu	37	chr3	168812877	168812877	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacgtaccggacatgttcccAttctcatgtttctttaggtg	8	10	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168812877	T	T	168812877	3	4	105	1	0	0	0	0	1	0	0	0	9515	214	8	5	733	5	MECOM	3	168812877	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	1648664	168812877	29209553	102	102356											
ACAP2	23527	broad.mit.edu	37	chr3	195041320	195041320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggttcaggaaagtttctaTggaatttacagaagttaaag	11	3	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195041320	C	C	195041320	1	2	105	0	1	0	0	0	0	0	0	0	119	1479	51	5		5	ACAP2	3	195041320	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	26228443	195041320	2981110	103	102357											
BEND4	389206	broad.mit.edu	37	chr4	42127651	42127651	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagttggttgtggtgctgCagaaccatcttcaagtaatc	12	7	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42127651	T	T	42127651	2	4	105	1	0	0	0	0	0	0	0	1	1405	697	25	4		4	BEND4	4	42127651	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08		42127651	149026625	104	102358											
GABRA2	2555	broad.mit.edu	37	chr4	46312156	46312156	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgactttccctgatattattGacccaaaacatgtaacttca	4	10	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46312156	T	T	46312156	1	4	105	0	1	0	0	0	0	0	0	0	6221	1305	45	3		3	GABRA2	4	46312156	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	4184505	46312156	144842120	105	102359											
UGT2B4	7363	broad.mit.edu	37	chr4	70355072	70355072	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaacagctgaatatataggCaggaagtttctacaattggg	10	7	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70355072	G	G	70355072	1	3	105	0	1	0	0	0	0	0	0	0	17087	725	25	4		4	UGT2B4	4	70355072	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	24042916	70355072	120799204	106	102360											
CSN2	1447	broad.mit.edu	37	chr4	70823356	70823356	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtagacagtgtctttaGctttagggacttccattatt	9	6	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70823356	C	C	70823356	3	2	105	1	0	0	0	0	1	0	0	0	3982	971	34	4	377	4	CSN2	4	70823356	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	468284	70823356	120330920	107	102361											
CCDC158	339965	broad.mit.edu	37	chr4	77266308	77266308	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggctttagaagagcccacAgtcatcaaaaagtacctatt	7	10	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77266308	C	C	77266308	1	2	105	0	1	0	0	0	0	0	0	0	2817	203	7	5		5	CCDC158	4	77266308	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	6442952	77266308	113887968	108	102362											
RASGEF1B	153020	broad.mit.edu	37	chr4	82354942	82354942	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatttctatactaatttcCtaaatgaaggatttggggat	8	5	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82354942	G	G	82354942	1	3	105	0	1	0	0	0	0	0	0	0	13178	696	24	4		4	RASGEF1B	4	82354942	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	5088634	82354942	108799334	109	102363											
GRID2	2895	broad.mit.edu	37	chr4	94316699	94316699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctccataaagactataCagaggtgatgggactgttct	10	7	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94316699	A	A	94316699	1	1	105	0	1	0	0	0	0	0	0	0	6838	493	17	3		3	GRID2	4	94316699	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	11961757	94316699	96837577	110	102364											
NPNT	255743	broad.mit.edu	37	chr4	106863785	106863785	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactatagcaccagctgccaGtacacctccaggagggatta	9	12	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106863785	C	C	106863785	3	2	105	1	0	0	0	0	1	0	0	0	10685	1029	36	4	1264	4	NPNT	4	106863785	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	12547086	106863785	84290491	111	102365											
ENPEP	2028	broad.mit.edu	37	chr4	111434800	111434800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaatggtcacactgtgcCagtgagctttggaaaacagt	11	7	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111434800	A	A	111434800	1	1	105	0	1	0	0	0	0	0	0	0	5170	609	21	2		2	ENPEP	4	111434800	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4571015	111434800	79719476	112	102366											
NDST4	64579	broad.mit.edu	37	chr4	115898299	115898299	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatcattcaaaatttatttCctatttatatgtagctgcct	4	7	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115898299	A	A	115898299	1	1	105	0	1	0	0	0	0	0	0	0	10353	870	30	3		3	NDST4	4	115898299	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4463499	115898299	75255977	113	102367											
FAT4	79633	broad.mit.edu	37	chr4	126240206	126240206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggagacactatggttaaCataacagttaaggatttgaa	9	5	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126240206	A	A	126240206	3	1	105	1	0	0	0	0	1	0	0	0	5749	477	17	3	2642	3	FAT4	4	126240206	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	10341907	126240206	64914070	114	102368											
RNF150	57484	broad.mit.edu	37	chr4	141888839	141888839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaataaaagacgagccatgCgagggaaatgatcatcagga	12	6	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141888839	A	A	141888839	3	1	105	1	0	0	0	0	1	0	0	0	13562	768	27	3	667	3	RNF150	4	141888839	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	15648633	141888839	49265437	115	102369											
TTC29	83894	broad.mit.edu	37	chr4	147796051	147796051	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcaattgatggaatgcttCataatgctcagcagcttcca	8	9	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147796051	T	T	147796051	3	4	105	1	0	0	0	0	1	0	0	0	16822	835	29	4	839	4	TTC29	4	147796051	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	5907212	147796051	43358225	116	102370											
PRMT10	90826	broad.mit.edu	37	chr4	148575784	148575784	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagaggatcacataaacatCtccatcctccatctagcccc	4	17	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148575784	T	T	148575784	1	4	105	0	1	0	0	0	0	0	0	0	12642	928	32	4		4	PRMT10	4	148575784	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	779733	148575784	42578492	117	102371											
TRIM60	166655	broad.mit.edu	37	chr4	165961194	165961194	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggactgatcaaagggaggtTaccttatgcattacctttgt	10	7	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165961194	A	A	165961194	1	1	105	0	1	0	0	0	0	0	0	0	16660	1769	61	5		5	TRIM60	4	165961194	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	17385410	165961194	25193082	118	102372											
TLL1	7092	broad.mit.edu	37	chr4	166960625	166960625	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcccttttatgtggctatGtatctattctgtcccgtcca	6	11	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166960625	A	A	166960625	1	1	105	0	1	0	0	0	0	0	0	0	16068	1392	48	4		4	TLL1	4	166960625	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	999431	166960625	24193651	119	102373											
SLC6A19	340024	broad.mit.edu	37	chr5	1201699	1201699	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctataaagtgcccggctcccGgcccacggccactcgccctc	9	20	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1201699	T	T	1201699	1	4	105	0	1	0	0	0	0	0	0	0	14796	1131	39	1		1	SLC6A19	5	1201699	5'Flank	SNP	G	TCGA-44-2655-01A-01D-1553-08		1201699	179713561	120	102374											
ADAMTS16	170690	broad.mit.edu	37	chr5	5240117	5240117	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagttaatggctgttggcaTaattttaagaagaatgtaaa	9	2	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5240117	A	A	5240117	1	1	105	0	1	0	0	0	0	0	0	0	261	1421	49	5		5	ADAMTS16	5	5240117	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	4038418	5240117	175675143	121	102375											
CDH12	1010	broad.mit.edu	37	chr5	22078833	22078833	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaactccaacacttaaCgtagaattgtggaatccagg	7	8	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078833	A	A	22078833	1	1	105	0	1	0	0	0	0	0	0	0	3128	551	19	3		3	CDH12	5	22078833	5'UTR	SNP	C	TCGA-44-2655-01A-01D-1553-08	16838716	22078833	158836427	122	102376											
PRLR	5618	broad.mit.edu	37	chr5	35072726	35072726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgaatttcatacaggagcGtgaaccaaccagtttttaag	8	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35072726	T	T	35072726	3	4	105	1	0	0	0	0	1	0	0	0	12637	1145	40	3	1394	3	PRLR	5	35072726	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	12993893	35072726	145842534	123	102377											
IL7R	3575	broad.mit.edu	37	chr5	35871034	35871034	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagaagaaatggttttctGaatagttggccatttactga	10	4	1	5			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35871034	A	A	35871034	1	1	105	0	1	0	0	0	0	0	0	0	7775	1305	45	4		4	IL7R	5	35871034	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	798308	35871034	145044226	124	102378											
OXCT1	5019	broad.mit.edu	37	chr5	41850324	41850324	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataagttcactaagcacaCttctctatgtggacacaaac	5	12	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41850324	A	A	41850324	1	1	105	0	1	0	0	0	0	0	0	0	11423	580	20	3		3	OXCT1	5	41850324	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	5979290	41850324	139064936	125	102379											
SNX18	112574	broad.mit.edu	37	chr5	53814755	53814755	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctgtacgcgcgcctggcgGagaagttcccggtcatctcc	14	14	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53814755	T	T	53814755	4	4	105	1	0	0	0	0	0	1	0	0	15003	1175	41	3	975	3	SNX18	5	53814755	Nonsense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	11964431	53814755	127100505	126	102380											
ANKRD55	79722	broad.mit.edu	37	chr5	55412488	55412488	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacgccgtgtgaccgcagtAcagggcataggccaagggcg	15	12	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55412488	T	T	55412488	3	4	105	1	0	0	0	0	1	0	0	0	681	391	14	5	941	5	ANKRD55	5	55412488	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	1597733	55412488	125502772	127	102381											
ANKRD55	79722	broad.mit.edu	37	chr5	55439661	55439661	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagagcggttttaaagtcTttatccacaagggtggggtc	14	6	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55439661	A	A	55439661	3	1	105	1	0	0	0	0	1	0	0	0	681	1606	56	5	1289	5	ANKRD55	5	55439661	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	27173	55439661	125475599	128	102382											
ERCC8	1161	broad.mit.edu	37	chr5	60195590	60195590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttacattgacatatgtagCtaggacaatgactgtacccc	8	9	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60195590	A	A	60195590	1	1	105	0	1	0	0	0	0	0	0	0	5261	812	28	3		3	ERCC8	5	60195590	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4755929	60195590	120719670	129	102383											
IQGAP2	10788	broad.mit.edu	37	chr5	75989204	75989204	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaagctgataattgatgtGatccggaaccagccagggaa	12	7	0	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75989204	T	T	75989204	2	4	105	1	0	0	0	0	0	0	0	1	7885	1277	45	3		3	IQGAP2	5	75989204	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	15793614	75989204	104926056	130	102384											
RASA1	5921	broad.mit.edu	37	chr5	86672763	86672763	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatgtggacaagaccgaacActactggccagcatcctact	9	12	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86672763	T	T	86672763	2	4	105	1	0	0	0	0	0	0	0	1	13168	146	6	5		5	RASA1	5	86672763	Silent	SNP	A	TCGA-44-2655-01A-01D-1553-08	10683559	86672763	94242497	131	102385											
SLCO6A1	133482	broad.mit.edu	37	chr5	101834578	101834578	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcggctcctggcgacgcGgcccgagtgctctcggctgc	17	15	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101834578	T	T	101834578	1	4	105	0	1	0	0	0	0	0	0	0	14846	1131	39	1		1	SLCO6A1	5	101834578	5'UTR	SNP	G	TCGA-44-2655-01A-01D-1553-08	15161815	101834578	79080682	132	102386											
FBN2	2201	broad.mit.edu	37	chr5	127653769	127653769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagcaaacactcatcacGgttcattatcaagagagtct	7	10	5	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127653769	T	T	127653769	1	4	105	0	1	0	0	0	0	0	0	0	5760	1131	39	1		1	FBN2	5	127653769	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	25819191	127653769	53261491	133	102387											
C5orf56	441108	broad.mit.edu	37	chr5	131822192	131822192	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccagcaccatgcctccaaGagaaagagtcatcccactga	8	14	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131822192	C	C	131822192	3	2	105	1	0	0	0	0	1	0	0	0	2335	957	33	4		4	C5orf56	5	131822192	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	4168423	131822192	49093068	134	102388											
PCDHB6	56130	broad.mit.edu	37	chr5	140531692	140531692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcggcgtgtgggcgcaCaatggcgaggtgcgcaccgc	17	12	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140531692	A	A	140531692	3	1	105	1	0	0	0	0	1	0	0	0	11640	477	17	3	1856	3	PCDHB6	5	140531692	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	8709500	140531692	40383568	135	102389											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719632	140719632	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactctcttccaggaaccaTaattgggctttttaatgtac	7	9	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140719632	C	C	140719632	3	2	105	1	0	0	0	0	1	0	0	0	11648	1406	49	5	1096	5	PCDHGA2	5	140719632	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	187940	140719632	40195628	136	102390											
CSF1R	1436	broad.mit.edu	37	chr5	149449602	149449602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtatgggtcatcccagacCtgcagcacttgggcctcatc	12	13	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149449602	A	A	149449602	3	1	105	1	0	0	0	0	1	0	0	0	3966	680	24	2	1626	2	CSF1R	5	149449602	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	8729970	149449602	31465658	137	102391											
SLC36A3	285641	broad.mit.edu	37	chr5	150656993	150656993	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagttggccatggaatggctGatgggttggggcaactcata	16	6	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150656993	T	T	150656993	2	4	105	1	0	0	0	0	0	0	0	1	14709	1280	45	3		3	SLC36A3	5	150656993	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	1207391	150656993	30258267	138	102392											
RIPK1	8737	broad.mit.edu	37	chr6	3105762	3105762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcccagggacttgggatGggtcctgtggaggagtcctg	17	8	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3105762	T	T	3105762	3	4	105	1	0	0	0	0	1	0	0	0	13491	1348	47	2	1083	2	RIPK1	6	3105762	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08		3105762	168009305	139	102393											
MAK	4117	broad.mit.edu	37	chr6	10791901	10791901	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttctgaggaatttgaaAtcttaccgaaatggagaatc	8	5	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10791901	G	G	10791901	1	3	105	0	1	0	0	0	0	0	0	0	9289	116	4	5		5	MAK	6	10791901	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	7686139	10791901	160323166	140	102394											
EDN1	1906	broad.mit.edu	37	chr6	12294678	12294678	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attaggtaagaggttcacaaGaacaactagccccagtcagt	9	9	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12294678	T	T	12294678	1	4	105	0	1	0	0	0	0	0	0	0	4956	957	33	3		3	EDN1	6	12294678	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1502777	12294678	158820389	141	102395											
MRS2	57380	broad.mit.edu	37	chr6	24416899	24416899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttttcctgtgcagtatcGtatctaattcaatgtaattc	5	8	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24416899	T	T	24416899	1	4	105	0	1	0	0	0	0	0	0	0	9945	1160	40	3		3	MRS2	6	24416899	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	12122221	24416899	146698168	142	102396											
ALDH5A1	7915	broad.mit.edu	37	chr6	24503644	24503644	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaagcagcccataggcgtgGctgcagtcatcaccccggta	11	14	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24503644	C	C	24503644	3	2	105	1	0	0	0	0	1	0	0	0	502	1203	42	4	602	4	ALDH5A1	6	24503644	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	86745	24503644	146611423	143	102397											
ZNF165	7718	broad.mit.edu	37	chr6	28056964	28056964	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatcttactagacatcggCgaattcacactggggaaaga	10	9	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28056964	T	T	28056964	4	4	105	1	0	0	0	0	0	1	0	0	17866	760	27	4	1184	4	ZNF165	6	28056964	Nonsense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	3553320	28056964	143058103	144	102398											
OR12D2	26529	broad.mit.edu	37	chr6	29364990	29364990	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttctgtggttccaaccgtAtccatcattttctctgtgat	6	11	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29364990	C	C	29364990	3	2	105	1	0	0	0	0	1	0	0	0	11025	449	16	5	516	5	OR12D2	6	29364990	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	1308026	29364990	141750077	145	102399											
TNXB	7148	broad.mit.edu	37	chr6	32052275	32052275	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtacttgcggccaggatcCagggaggtgatgacggccga	16	9	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32052275	A	A	32052275	2	1	105	1	0	0	0	0	0	0	0	1	16469	581	21	2		2	TNXB	6	32052275	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	2687285	32052275	139062792	146	102400											
NOTCH4	4855	broad.mit.edu	37	chr6	32187987	32187987	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtgtggagcctgtgaGggggttggtgctgcattggg	21	5	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32187987	A	A	32187987	3	1	105	1	0	0	0	0	1	0	0	0	10646	1000	35	4	4873	4	NOTCH4	6	32187987	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	135712	32187987	138927080	147	102401											
CPNE5	57699	broad.mit.edu	37	chr6	36759766	36759766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcctgcactccatcacCcccaccccaaccacgtcctg	5	23	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36759766	A	A	36759766	1	1	105	0	1	0	0	0	0	0	0	0	3847	638	22	2		2	CPNE5	6	36759766	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4571779	36759766	134355301	148	102402											
CUL9	23113	broad.mit.edu	37	chr6	43152465	43152465	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggaccccaagcctcacGgccgctgtgcttcacaccat	10	16	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43152465	A	A	43152465	2	1	105	1	0	0	0	0	0	0	0	1	4094	1103	39	4		4	CUL9	6	43152465	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	6392699	43152465	127962602	149	102403											
EFHC1	114327	broad.mit.edu	37	chr6	52334359	52334359	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaagctgtagattaacAgctgtcagagttatgtgttg	11	5	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52334359	C	C	52334359	1	2	105	0	1	0	0	0	0	0	0	0	4986	203	7	5		5	EFHC1	6	52334359	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	9181894	52334359	118780708	150	102404											
GCLC	2729	broad.mit.edu	37	chr6	53374114	53374114	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctccccaagcagtgaagtCagagaaggaaggtgctgggc	15	9	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53374114	A	A	53374114	1	1	105	0	1	0	0	0	0	0	0	0	6357	841	29	3		3	GCLC	6	53374114	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1039755	53374114	117740953	151	102405											
COL19A1	1310	broad.mit.edu	37	chr6	70745666	70745666	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttatgcagagacttttatCaggatgaagttctatttttc	7	6	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70745666	A	A	70745666	1	1	105	0	1	0	0	0	0	0	0	0	3708	841	29	3		3	COL19A1	6	70745666	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	17371552	70745666	100369401	152	102406											
COL19A1	1310	broad.mit.edu	37	chr6	70894706	70894706	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaccaacatttacatcaatCagactgatgaaaaatcttgg	5	9	3	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70894706	A	A	70894706	1	1	105	0	1	0	0	0	0	0	0	0	3708	841	29	3		3	COL19A1	6	70894706	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	149040	70894706	100220361	153	102407											
COL9A1	1297	broad.mit.edu	37	chr6	70964920	70964920	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagccccctgcagggaggaaGagaaagaatagacaagacat	12	9	0	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70964920	A	A	70964920	1	1	105	0	1	0	0	0	0	0	0	0	3739	957	33	4		4	COL9A1	6	70964920	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	70214	70964920	100150147	154	102408											
RARS2	57038	broad.mit.edu	37	chr6	88228554	88228554	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacagacctgaataatgagTgctgcgagcccgaccctctc	9	13	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88228554	A	A	88228554	2	1	105	1	0	0	0	0	0	0	0	1	13167	1683	59	5		5	RARS2	6	88228554	Silent	SNP	T	TCGA-44-2655-01A-01D-1553-08	17263634	88228554	82886513	155	102409											
GABRR1	2569	broad.mit.edu	37	chr6	89891759	89891759	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgcaacgtgaaattaatgtAgagacggttgtaccagcctg	11	8	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89891759	T	T	89891759	3	4	105	1	0	0	0	0	1	0	0	0	6236	420	15	5	637	5	GABRR1	6	89891759	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	1663205	89891759	81223308	156	102410											
GABRR1	2569	broad.mit.edu	37	chr6	89894939	89894939	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgacactgctcacctgacGaccaattcaaacctttccta	5	14	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89894939	A	A	89894939	1	1	105	0	1	0	0	0	0	0	0	0	6236	1073	37	4		4	GABRR1	6	89894939	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	3180	89894939	81220128	157	102411											
TRAF3IP2	10758	broad.mit.edu	37	chr6	111913163	111913163	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagacaagctgttgggtgCcatgttccttatatttggag	12	7	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111913163	A	A	111913163	3	1	105	1	0	0	0	0	1	0	0	0	16565	739	26	3	1602	3	TRAF3IP2	6	111913163	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	22018224	111913163	59201904	158	102412											
HSF2	3298	broad.mit.edu	37	chr6	122752545	122752545	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacataaaatatgaaacaAgtacttatatatatattttt	3	3	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122752545	G	G	122752545	1	3	105	0	1	0	0	0	0	0	0	0	7463	87	3	5		5	HSF2	6	122752545	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	10839382	122752545	48362522	159	102413											
IFNGR1	3459	broad.mit.edu	37	chr6	137519214	137519214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttggtctataaccaatcaagGactctttaccgctatcatcc	5	12	4	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137519214	A	A	137519214	3	1	105	1	0	0	0	0	1	0	0	0	7619	1174	41	4	49	4	IFNGR1	6	137519214	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	14766669	137519214	33595853	160	102414											
SYNE1	23345	broad.mit.edu	37	chr6	152534964	152534964	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttctctagcatataaaacTagattaaataatctctgtgc	4	8	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152534964	A	A	152534964	1	1	105	0	1	0	0	0	0	0	0	0	15564	1537	53	5		5	SYNE1	6	152534964	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	15015750	152534964	18580103	161	102415											
SYNE1	23345	broad.mit.edu	37	chr6	152685919	152685919	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccacaggaatggtctgttCagtagtattatattgatctt	10	6	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152685919	T	T	152685919	1	4	105	0	1	0	0	0	0	0	0	0	15564	841	29	4		4	SYNE1	6	152685919	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	150955	152685919	18429148	162	102416											
SYNE1	23345	broad.mit.edu	37	chr6	152949423	152949423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcctctgcatcacattgGcgatatcccgaggacaccgg	11	14	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152949423	T	T	152949423	3	4	105	1	0	0	0	0	1	0	0	0	15564	1203	42	3	27023	3	SYNE1	6	152949423	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	263504	152949423	18165644	163	102417											
FNDC1	84624	broad.mit.edu	37	chr6	159644719	159644719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttatatatgagagatggGgtttttctggccctgaaaag	11	5	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159644719	T	T	159644719	1	4	105	0	1	0	0	0	0	0	0	0	6026	1247	43	2		2	FNDC1	6	159644719	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	6695296	159644719	11470348	164	102418											
SOD2	6648	broad.mit.edu	37	chr6	160103667	160103667	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatccccagcagtggaataAggcctgttagaaagaagggg	13	8	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160103667	C	C	160103667	3	2	105	1	0	0	0	0	1	0	0	0	15035	72	3	5	145	5	SOD2	6	160103667	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	458948	160103667	11011400	165	102419											
LPA	4018	broad.mit.edu	37	chr6	161022092	161022092	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataacaccaaggggctgccAcaggatctggatttcggcag	12	10	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161022092	G	G	161022092	3	3	105	1	0	0	0	0	1	0	0	0	8990	159	6	5	3222	5	LPA	6	161022092	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	918425	161022092	10092975	166	102420											
PDE10A	10846	broad.mit.edu	37	chr6	165846423	165846423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttcaatgagctaggtaCaactaaaaattctaacatgc	5	10	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165846423	A	A	165846423	1	1	105	0	1	0	0	0	0	0	0	0	11724	493	17	3		3	PDE10A	6	165846423	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4824331	165846423	5268644	167	102421											
SLC29A4	222962	broad.mit.edu	37	chr7	5338634	5338634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggagcacccagccccgGccctggcccccaacgagtcc	10	21	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5338634	T	T	5338634	3	4	105	1	0	0	0	0	1	0	0	0	14651	1203	42	3	924	3	SLC29A4	7	5338634	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08		5338634	153800029	168	102422											
AGR2	10551	broad.mit.edu	37	chr7	16840838	16840839	+	Intron	INS	-	AG	AG													ggtttgttgctttaaaagacINSagagattagacaaattttaa							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	16840839	AG	AG	16840838	6	5	105	0	1	1	1	0	0	0	0	0	395	493	17	0		0	AGR2	7	16840838	Intron	INS	-	TCGA-44-2655-01A-01D-1553-08	11502204	16840838	142297825	169	102423											
SKAP2	8935	broad.mit.edu	37	chr7	27023021	27023021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctagtctgggcagcgcaGggcacaatgcatggctcagt	14	11	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27023021	T	T	27023021	1	4	105	0	1	0	0	0	0	0	0	0	14469	1015	35	2		2	SKAP2	7	27023021	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	10182183	27023021	132115642	170	102424											
CREB5	9586	broad.mit.edu	37	chr7	28534647	28534647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaggaaaagaagctttgGgtgatcagatctgttccatg	11	7	3	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28534647	T	T	28534647	1	4	105	0	1	0	0	0	0	0	0	0	3892	1247	43	2		2	CREB5	7	28534647	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1511626	28534647	130604016	171	102425											
CRHR2	1395	broad.mit.edu	37	chr7	30693085	30693085	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaccgaggggtcacacagcGgccgtctgcttgatgctgtg	15	12	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30693085	A	A	30693085	2	1	105	1	0	0	0	0	0	0	0	1	3904	1103	39	4		4	CRHR2	7	30693085	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	2158438	30693085	128445578	172	102426											
RALA	5898	broad.mit.edu	37	chr7	39730128	39730128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacttccgaagtggggagGggttcctctgtgttttctct	12	9	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39730128	T	T	39730128	3	4	105	1	0	0	0	0	1	0	0	0	13118	1232	43	2	268	2	RALA	7	39730128	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	9037043	39730128	119408535	173	102427											
GRB10	2887	broad.mit.edu	37	chr7	50742267	50742267	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattctgcaggaggggcacCgtgtctgactgcatgctgca	13	12	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50742267	A	A	50742267	2	1	105	1	0	0	0	0	0	0	0	1	6822	639	23	1		1	GRB10	7	50742267	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	11012139	50742267	108396396	174	102428											
ZNF713	349075	broad.mit.edu	37	chr7	55980501	55980501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttctcagaagtgctgaGtcacaaaaatccagagccca	7	11	3	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55980501	T	T	55980501	1	4	105	0	1	0	0	0	0	0	0	0	18245	1044	36	3		3	ZNF713	7	55980501	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	5238234	55980501	103158162	175	102429											
WBSCR17	64409	broad.mit.edu	37	chr7	71130353	71130353	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggagggggcatagcctcTgggaatttctttttcaggct	15	7	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71130353	C	C	71130353	1	2	105	0	1	0	0	0	0	0	0	0	17391	1595	55	5		5	WBSCR17	7	71130353	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	15149852	71130353	88008310	176	102430											
TBL2	26608	broad.mit.edu	37	chr7	72987318	72987318	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccctgagcgggaagggagtGatgtgggtcacgggcagtga	19	7	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72987318	C	C	72987318	1	2	105	0	1	0	0	0	0	0	0	0	15764	1305	45	4		4	TBL2	7	72987318	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1856965	72987318	86151345	177	102431											
POR	5447	broad.mit.edu	37	chr7	75573147	75573147	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctgtaaatgcttccaagAtatgagcgaatgctatagaa	8	8	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75573147	T	T	75573147	1	4	105	0	1	0	0	0	0	0	0	0	12352	348	12	5		5	POR	7	75573147	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	2585829	75573147	83565516	178	102432			1	83		3	3	47	N	G_C_A	2.080546e-07
POR	5447	broad.mit.edu	37	chr7	75573160	75573160	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagatatgagcgaatgCtatagaaattgcaggaaagt	10	5	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75573160	G	G	75573160	1	3	105	0	1	0	0	0	0	0	0	0	12352	812	28	4		4	POR	7	75573160	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	13	75573160	83565503	179	102433			1	83		3	3	47	N	G_C_A	2.080546e-07
POR	5447	broad.mit.edu	37	chr7	75573193	75573193	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaagtccaaagggctgcGcgtctcctgtggctcagtct	13	11	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75573193	T	T	75573193	1	4	105	0	1	0	0	0	0	0	0	0	12352	1102	38	3		3	POR	7	75573193	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	33	75573193	83565470	180	102434			1	83		3	3	47	N	G_C_A	2.080546e-07
CACNA2D1	781	broad.mit.edu	37	chr7	81662148	81662148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttgttaaatatctcctGggctctctcttctcctccat	5	12	4	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81662148	T	T	81662148	3	4	105	1	0	0	0	0	1	0	0	0	2574	1357	47	2	2279	2	CACNA2D1	7	81662148	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	6088955	81662148	77476515	181	102435											
ABCB4	5244	broad.mit.edu	37	chr7	87031499	87031499	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgatgcgtgccatgctcCttgactctcccattctgaaa	8	13	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87031499	G	G	87031499	3	3	105	1	0	0	0	0	1	0	0	0	43	680	24	4	90	4	ABCB4	7	87031499	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	5369351	87031499	72107164	182	102436											
CALCR	799	broad.mit.edu	37	chr7	93108925	93108925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatttttgctctctaagCaatacttattcatggtctct	4	8	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93108925	A	A	93108925	1	1	105	0	1	0	0	0	0	0	0	0	2605	725	25	3		3	CALCR	7	93108925	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	6077426	93108925	66029738	183	102437											
PIK3CG	5294	broad.mit.edu	37	chr7	106524542	106524542	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttttagaagtcatttgtaGattcatgatgctttttgtag	8	4	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106524542	T	T	106524542	1	4	105	0	1	0	0	0	0	0	0	0	12011	957	33	3		3	PIK3CG	7	106524542	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	13415617	106524542	52614121	184	102438											
NRCAM	4897	broad.mit.edu	37	chr7	107808728	107808728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattgtttcttactgcctgCtacaccatattcaacataaa	3	10	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107808728	A	A	107808728	3	1	105	1	0	0	0	0	1	0	0	0	10739	797	28	3	657	3	NRCAM	7	107808728	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	1284186	107808728	51329935	185	102439											
CFTR	1080	broad.mit.edu	37	chr7	117232483	117232483	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atactgcctcgcatcagcgtGatcagcactggccccacgct	9	16	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117232483	A	A	117232483	2	1	105	1	0	0	0	0	0	0	0	1	3324	1277	45	4		4	CFTR	7	117232483	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	9423755	117232483	41906180	186	102440											
FAM71F1	84691	broad.mit.edu	37	chr7	128357114	128357114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatgcaaagtggaggttGcttgactactaaactcaagg	13	6	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128357114	T	T	128357114	1	4	105	0	1	0	0	0	0	0	0	0	5663	1334	46	3		3	FAM71F1	7	128357114	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	11124631	128357114	30781549	187	102441											
OPN1SW	611	broad.mit.edu	37	chr7	128415864	128415864	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggatgccccacacccccctCtgagtcctcttataggtgat	8	15	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128415864	G	G	128415864	1	3	105	0	1	0	0	0	0	0	0	0	10974	928	32	4		4	OPN1SW	7	128415864	5'Flank	SNP	C	TCGA-44-2655-01A-01D-1553-08	58750	128415864	30722799	188	102442											
LRGUK	136332	broad.mit.edu	37	chr7	133827983	133827983	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcattaaataagcaaaataGcactcaaatagagaattcag	6	6	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133827983	C	C	133827983	1	2	105	0	1	0	0	0	0	0	0	0	9030	986	34	4		4	LRGUK	7	133827983	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	5412119	133827983	25310680	189	102443											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138739782	138739782	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgagctcaggcaatccactCgcctcggcctcccaaaatgc	8	17	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138739782	A	A	138739782	1	1	105	0	1	0	0	0	0	0	0	0	17701	899	31	3		3	ZC3HAV1	7	138739782	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4911799	138739782	20398881	190	102444											
KEL	3792	broad.mit.edu	37	chr7	142641424	142641424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacatcgttgtattcttGtcgggccagctctggcttca	9	13	3	0	rs61729050		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142641424	T	T	142641424	3	4	105	1	0	0	0	0	1	0	0	0	8212	1386	48	3	749	3	KEL	7	142641424	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	3901642	142641424	16497239	191	102445											
OR2A5	393046	broad.mit.edu	37	chr7	143748277	143748277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattgtcatgtacatggcCcccaagtcccgccaccctga	8	17	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143748277	A	A	143748277	2	1	105	1	0	0	0	0	0	0	0	1	11075	610	22	2		2	OR2A5	7	143748277	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	1106853	143748277	15390386	192	102446											
ZNF777	27153	broad.mit.edu	37	chr7	149153030	149153030	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattggaacagagtttctcgGgggagtccagcaggggcctg	17	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149153030	A	A	149153030	2	1	105	1	0	0	0	0	0	0	0	1	18279	1219	43	4		4	ZNF777	7	149153030	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	5404753	149153030	9985633	193	102447											
DPP6	1804	broad.mit.edu	37	chr7	154379590	154379590	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgtttcagatattccatgGagaccctggctggaggattg	12	9	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154379590	T	T	154379590	1	4	105	0	1	0	0	0	0	0	0	0	4770	1189	41	3		3	DPP6	7	154379590	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	5226560	154379590	4759073	194	102448											
PTPRN2	5799	broad.mit.edu	37	chr7	157475536	157475536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagaggccaggaggacgcCcaggatgcaggcgagggaga	19	10	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157475536	A	A	157475536	3	1	105	1	0	0	0	0	1	0	0	0	12916	623	22	2	1209	2	PTPRN2	7	157475536	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	3095946	157475536	1663127	195	102449											
DLGAP2	9228	broad.mit.edu	37	chr8	1581080	1581080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaggccatggatgccctcGacctcccgggatgtttccga	11	15	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1581080	T	T	1581080	3	4	105	1	0	0	0	0	1	0	0	0	4600	1058	37	3	1452	3	DLGAP2	8	1581080	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08		1581080	144782942	196	102450											
CSMD1	64478	broad.mit.edu	37	chr8	4645154	4645154	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaagaatagcaactggttCttttctcaaaagaaatcctg	7	8	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4645154	G	G	4645154	1	3	105	0	1	0	0	0	0	0	0	0	3978	928	32	4		4	CSMD1	8	4645154	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	3064074	4645154	141718868	197	102451											
FGL1	2267	broad.mit.edu	37	chr8	17722223	17722223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttagccgtgtaggggcCgctgtagtatacaccattca	11	9	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17722223	A	A	17722223	3	1	105	1	0	0	0	0	1	0	0	0	5929	652	23	1	125	1	FGL1	8	17722223	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	13077069	17722223	128641799	198	102452											
TNFRSF10A	8797	broad.mit.edu	37	chr8	23058164	23058164	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgggctgctggtccctgtctCctctgcagctggggcttccc	13	16	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23058164	A	A	23058164	1	1	105	0	1	0	0	0	0	0	0	0	16403	870	30	3		3	TNFRSF10A	8	23058164	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	5335941	23058164	123305858	199	102453											
FZD3	7976	broad.mit.edu	37	chr8	28385432	28385432	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcctgtatgtggtagtTggggtttctctcctcttagc	11	10	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28385432	A	A	28385432	2	1	105	1	0	0	0	0	0	0	0	1	6191	1799	63	5		5	FZD3	8	28385432	Silent	SNP	T	TCGA-44-2655-01A-01D-1553-08	5327268	28385432	117978590	200	102454											
KIF13B	23303	broad.mit.edu	37	chr8	29035078	29035078	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaccaggctgagtttgccCactttctctccagatgtcta	7	14	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29035078	A	A	29035078	2	1	105	1	0	0	0	0	0	0	0	1	8345	581	21	2		2	KIF13B	8	29035078	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	649646	29035078	117328944	201	102455											
UNC5D	137970	broad.mit.edu	37	chr8	35608274	35608274	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcatgtcctgtaactccCtggattacaacttgagagtt	9	10	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35608274	G	G	35608274	3	3	105	1	0	0	0	0	1	0	0	0	17121	680	24	4	2160	4	UNC5D	8	35608274	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	6573196	35608274	110755748	202	102456											
SLC20A2	6575	broad.mit.edu	37	chr8	42287590	42287590	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggcttacctggacggCgtgatgggagtgaggtcctt	16	10	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42287590	A	A	42287590	2	1	105	1	0	0	0	0	0	0	0	1	14552	755	27	3		3	SLC20A2	8	42287590	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	6679316	42287590	104076432	203	102457											
HGSNAT	138050	broad.mit.edu	37	chr8	43033147	43033147	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctcttttatagcatattAtaaaatgttactgatatata	3	5	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43033147	T	T	43033147	1	4	105	0	1	0	0	0	0	0	0	0	7155	464	16	5		5	HGSNAT	8	43033147	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	745557	43033147	103330875	204	102458											
PDE7A	5150	broad.mit.edu	37	chr8	66635829	66635829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcgcaaagtggactcacaCccaaatgatattttttttct	6	9	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66635829	A	A	66635829	3	1	105	1	0	0	0	0	1	0	0	0	11745	507	18	3	298	3	PDE7A	8	66635829	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	23602682	66635829	79728193	205	102459											
ZFHX4	79776	broad.mit.edu	37	chr8	77618186	77618186	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaaagtgcgacactgtGttggggtcttcgaggtctct	13	9	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77618186	T	T	77618186	2	4	105	1	0	0	0	0	0	0	0	1	17761	1364	48	3		3	ZFHX4	8	77618186	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	10982357	77618186	68745836	206	102460											
ZFHX4	79776	broad.mit.edu	37	chr8	77690667	77690667	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaagattgcccaccaaAtgagcttggtgagtaaccct	9	9	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77690667	T	T	77690667	3	4	105	1	0	0	0	0	1	0	0	0	17761	101	4	5	3327	5	ZFHX4	8	77690667	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	72481	77690667	68673355	207	102461											
MATN2	4147	broad.mit.edu	37	chr8	99019468	99019468	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcccgtgagtccctccGcgctcctctcataggggaag	11	16	1	1	rs56951352	by1000genomes	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99019468	T	T	99019468	1	4	105	0	1	0	0	0	0	0	0	0	9426	1102	38	3		3	MATN2	8	99019468	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	21328801	99019468	47344554	208	102462											
VPS13B	157680	broad.mit.edu	37	chr8	100169005	100169005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcttgtttgttagcatGggtttggctttgggatcatc	11	5	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100169005	T	T	100169005	1	4	105	0	1	0	0	0	0	0	0	0	17317	1363	47	2		2	VPS13B	8	100169005	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1149537	100169005	46195017	209	102463											
UBR5	51366	broad.mit.edu	37	chr8	103266711	103266711	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatccttcttcactggctGgcagtgatgggcttgatgtc	13	9	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103266711	A	A	103266711	3	1	105	1	0	0	0	0	1	0	0	0	17031	1348	47	4	184	4	UBR5	8	103266711	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	3097706	103266711	43097311	210	102464											
EXT1	2131	broad.mit.edu	37	chr8	118812003	118812004	+	Frame_Shift_Ins	INS	-	G	G													caaaatagagacctggtcttINStaaagaggacggggtcgagc							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118812004	G	G	118812003	7	5	105	1	0	1	1	0	0	0	0	0	5366	1841	64	0	55	0	EXT1	8	118812003	Frame_Shift_Ins	INS	-	TCGA-44-2655-01A-01D-1553-08	15545292	118812003	27552019	211	102465											
COL14A1	7373	broad.mit.edu	37	chr8	121222151	121222151	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaaaaagaggtaaccacttCctacctattacagtcctaga	6	10	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121222151	T	T	121222151	1	4	105	0	1	0	0	0	0	0	0	0	3703	870	30	4		4	COL14A1	8	121222151	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	2410148	121222151	25141871	212	102466											
ADCY8	114	broad.mit.edu	37	chr8	131879978	131879978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaaacattttggtatgCgtcctggactcagttatttt	8	8	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131879978	A	A	131879978	1	1	105	0	1	0	0	0	0	0	0	0	300	783	27	3		3	ADCY8	8	131879978	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	10657827	131879978	14484044	213	102467											
PHF20L1	51105	broad.mit.edu	37	chr8	133823374	133823374	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctccaatgctggagcagGtatgaaatggtagcatttga	12	7	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133823374	T	T	133823374	5	4	105	1	0	0	0	0	0	0	1	0	11927	1275	44	3	961	3	PHF20L1	8	133823374	Splice_Site	SNP	G	TCGA-44-2655-01A-01D-1553-08	1943396	133823374	12540648	214	102468											
COL22A1	169044	broad.mit.edu	37	chr8	139642846	139642846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatgtgagccacaggaggCacacaggacaagagcagaat	12	8	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139642846	A	A	139642846	1	1	105	0	1	0	0	0	0	0	0	0	3713	725	25	3		3	COL22A1	8	139642846	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	5819472	139642846	6721176	215	102469											
COL22A1	169044	broad.mit.edu	37	chr8	139737684	139737684	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggggtcctggagggccCtgtagagaaagagcatttgg	17	8	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139737684	A	A	139737684	5	1	105	1	0	0	0	0	0	0	1	0	3713	695	24	2	2909	2	COL22A1	8	139737684	Splice_Site	SNP	C	TCGA-44-2655-01A-01D-1553-08	94838	139737684	6626338	216	102470											
PYCRL	65263	broad.mit.edu	37	chr8	144689140	144689140	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctcctccagggtgctcaGagacaccccagcagccacgg	10	18	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144689140	A	A	144689140	2	1	105	1	0	0	0	0	0	0	0	1	12965	933	33	4		4	PYCRL	8	144689140	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	4951456	144689140	1674882	217	102471											
PLEC	5339	broad.mit.edu	37	chr8	145001143	145001143	+	Splice_Site	SNP	A	T	T													gttaggttcggccccaccctAcctcctggatgacactctct							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145001143	T	T	145001143	5	4	105	1	0	0	0	0	0	0	1	0	12147	405	14	5	9712	5	PLEC	8	145001143	Splice_Site	SNP	A	TCGA-44-2655-01A-01D-1553-08	312003	145001143	1362879	218	102472	446	2									
PLEC	5339	broad.mit.edu	37	chr8	145001150	145001150	+	Missense_Mutation	SNP	G	T	T													tcggccccaccctacctcctGgatgacactctctgatcccg							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145001150	T	T	145001150	3	4	105	1	0	0	0	0	1	0	0	0	12147	1357	47	2	9719	2	PLEC	8	145001150	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	7	145001150	1362872	219	102473	446	2									
ARHGAP39	80728	broad.mit.edu	37	chr8	145763265	145763265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcgcccactcagctccCgcacttggctggtgagcagg	13	16	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145763265	A	A	145763265	1	1	105	0	1	0	0	0	0	0	0	0	886	667	23	1		1	ARHGAP39	8	145763265	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	762115	145763265	600757	220	102474											
ZNF251	90987	broad.mit.edu	37	chr8	145948533	145948533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaagatctttccctgCccacggtagcttctgttaaa	6	14	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145948533	A	A	145948533	3	1	105	1	0	0	0	0	1	0	0	0	17922	739	26	3	1507	3	ZNF251	8	145948533	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	185268	145948533	415489	221	102475											
ACO1	48	broad.mit.edu	37	chr9	32421066	32421066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcgggctttttgtaaaaGttccatgaaacaccaagaat	8	8	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32421066	A	A	32421066	1	1	105	0	1	0	0	0	0	0	0	0	146	1044	36	4		4	ACO1	9	32421066	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08		32421066	108792365	222	102476											
GLIPR2	152007	broad.mit.edu	37	chr9	36162380	36162380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttcacggccatggtatGgaagaacaccaagaagatgg	11	9	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36162380	T	T	36162380	3	4	105	1	0	0	0	0	1	0	0	0	6508	1357	47	2	344	2	GLIPR2	9	36162380	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	3741314	36162380	105051051	223	102477											
GKAP1	80318	broad.mit.edu	37	chr9	86399774	86399774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaagaattaccaacaaCaattaagttcagtttacaaa	3	7	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86399774	A	A	86399774	1	1	105	0	1	0	0	0	0	0	0	0	6487	493	17	3		3	GKAP1	9	86399774	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	50237394	86399774	54813657	224	102478											
S1PR3	1903	broad.mit.edu	37	chr9	91617197	91617197	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgccccacacagccccctCatcctgcatcatggacaaga	6	19	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91617197	A	A	91617197	4	1	105	1	0	0	0	0	0	1	0	0	13906	838	29	3	1084	3	S1PR3	9	91617197	Nonsense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	5217423	91617197	49596234	225	102479											
C9orf3	84909	broad.mit.edu	37	chr9	97554921	97554921	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctttctgctgacgtgaccGacctccaagagttggctctt	9	14	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97554921	A	A	97554921	1	1	105	0	1	0	0	0	0	0	0	0	2503	1073	37	4		4	C9orf3	9	97554921	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	5937724	97554921	43658510	226	102480											
ACTL7B	10880	broad.mit.edu	37	chr9	111618088	111618088	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtgcaccttcctgggcttCatcttgagctgagtggccgc	12	12	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111618088	T	T	111618088	3	4	105	1	0	0	0	0	1	0	0	0	201	826	29	4	1128	4	ACTL7B	9	111618088	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	14063167	111618088	29595343	227	102481											
TNC	3371	broad.mit.edu	37	chr9	117803262	117803262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttcactttcctcaaagcCcttcatggcgatgatgctga	9	11	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117803262	T	T	117803262	3	4	105	1	0	0	0	0	1	0	0	0	16393	623	22	4	1295	4	TNC	9	117803262	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	6185174	117803262	23410169	228	102482											
CEP110	11064	broad.mit.edu	37	chr9	123920082	123920082	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaagaagaaatcttgaaaGaaataaacaaaattgtagca	7	4	1	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123920082	T	T	123920082	4	4	105	1	0	0	0	0	0	1	0	0	3275	943	33	3	4667	3	CEP110	9	123920082	Nonsense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	6116820	123920082	17293349	229	102483											
LCN2	3934	broad.mit.edu	37	chr9	130911883	130911883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggactccacctcagacCtgatcccagccccacctctg	6	21	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130911883	A	A	130911883	3	1	105	1	0	0	0	0	1	0	0	0	8756	680	24	2	81	2	LCN2	9	130911883	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	6991801	130911883	10301548	230	102484											
SEC61A2	55176	broad.mit.edu	37	chr10	12185280	12185280	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgagttttcaatgtctaCagggagggggaggatatcat	13	5	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12185280	T	T	12185280	1	4	105	0	1	0	0	0	0	0	0	0	14114	493	17	4		4	SEC61A2	10	12185280	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08		12185280	123349467	231	102485											
PRPF18	8559	broad.mit.edu	37	chr10	13655795	13655795	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagagaagattatgtgaaaCgcagtgtgcagggtaaactg	13	6	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13655795	T	T	13655795	3	4	105	1	0	0	0	0	1	0	0	0	12669	536	19	4	660	4	PRPF18	10	13655795	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	1470515	13655795	121878952	232	102486											
ITGA8	8516	broad.mit.edu	37	chr10	15599968	15599968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttaggaatatctgagcaCtgaaggagaccaagaacaat	10	7	1	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15599968	A	A	15599968	1	1	105	0	1	0	0	0	0	0	0	0	7952	580	20	3		3	ITGA8	10	15599968	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1944173	15599968	119934779	233	102487											
PCDH15	65217	broad.mit.edu	37	chr10	55839046	55839046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttaagactctctcagttGccttaatactatttttaaaa	4	7	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55839046	T	T	55839046	1	4	105	0	1	0	0	0	0	0	0	0	11605	1334	46	3		3	PCDH15	10	55839046	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	40239078	55839046	79695701	234	102488											
GRID1	2894	broad.mit.edu	37	chr10	87484054	87484054	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagaactttgccaatggAtaagttcttccaggccccta	8	12	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87484054	C	C	87484054	1	2	105	0	1	0	0	0	0	0	0	0	6837	348	12	5		5	GRID1	10	87484054	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	31645008	87484054	48050693	235	102489											
GRID1	2894	broad.mit.edu	37	chr10	88123668	88123668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcctcgcaggccgtgtccCagtgggccctgggcacagcg	15	16	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88123668	A	A	88123668	1	1	105	0	1	0	0	0	0	0	0	0	6837	609	21	2		2	GRID1	10	88123668	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	639614	88123668	47411079	236	102490											
RBP4	5950	broad.mit.edu	37	chr10	95353812	95353812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaagccagaaagccacCatgccgatcaatgcctttcc	7	15	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95353812	A	A	95353812	1	1	105	0	1	0	0	0	0	0	0	0	13266	609	21	2		2	RBP4	10	95353812	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	7230144	95353812	40180935	237	102491											
COL17A1	1308	broad.mit.edu	37	chr10	105791909	105791909	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaggacattgacagactcCagctttcaccctctggagac	9	12	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105791909	T	T	105791909	1	4	105	0	1	0	0	0	0	0	0	0	3706	609	21	4		4	COL17A1	10	105791909	3'UTR	SNP	C	TCGA-44-2655-01A-01D-1553-08	10438097	105791909	29742838	238	102492											
C10orf118	55088	broad.mit.edu	37	chr10	115884853	115884853	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacaatagaggtcagtggCacctactcctgtgtggcttt	10	11	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115884853	A	A	115884853	1	1	105	0	1	0	0	0	0	0	0	0	1598	725	25	3		3	C10orf118	10	115884853	3'UTR	SNP	C	TCGA-44-2655-01A-01D-1553-08	10092944	115884853	19649894	239	102493											
SLC18A2	6571	broad.mit.edu	37	chr10	119026199	119026199	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattactttttctaacatatGactgatatcagcactgataa	4	7	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119026199	T	T	119026199	1	4	105	0	1	0	0	0	0	0	0	0	14539	1305	45	3		3	SLC18A2	10	119026199	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	3141346	119026199	16508548	240	102494											
BTBD16	118663	broad.mit.edu	37	chr10	124050533	124050533	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggagtgagggagggcGctgggtggtgtcctgtgtgc	21	7	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124050533	C	C	124050533	1	2	105	0	1	0	0	0	0	0	0	0	1550	1102	38	4		4	BTBD16	10	124050533	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	5024334	124050533	11484214	241	102495											
DHX32	55760	broad.mit.edu	37	chr10	127526745	127526745	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtatgaattaaaaaaaaaAtacaaccctttcttctccat	3	8	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127526745	T	T	127526745	1	4	105	0	1	0	0	0	0	0	0	0	4545	116	4	5		5	DHX32	10	127526745	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	3476212	127526745	8008002	242	102496											
FAM196A	642938	broad.mit.edu	37	chr10	128936079	128936079	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggttctaaagacggcctcGagactccagacaccgtgagt	12	11	1	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128936079	T	T	128936079	1	4	105	0	1	0	0	0	0	0	0	0	5575	1073	37	3		3	FAM196A	10	128936079	3'UTR	SNP	G	TCGA-44-2655-01A-01D-1553-08	1409334	128936079	6598668	243	102497											
FAM196A	642938	broad.mit.edu	37	chr10	128973999	128973999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctcccgagcagctggtaatCgggctcttcggatggaggcc	14	13	1	0	rs142627987	byFrequency	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128973999	A	A	128973999	3	1	105	1	0	0	0	0	1	0	0	0	5575	884	31	3	790	3	FAM196A	10	128973999	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	37920	128973999	6560748	244	102498											
CTSD	1509	broad.mit.edu	37	chr11	1782765	1782765	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccgacgctgccaatgctGcacatccacctggaggcccc	11	18	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1782765	A	A	1782765	1	1	105	0	1	0	0	0	0	0	0	0	4066	1334	46	4		4	CTSD	11	1782765	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08		1782765	133223751	245	102499											
OR52N2	390077	broad.mit.edu	37	chr11	5841641	5841641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgggctggaagccacaCacatctggatctccctgcca	9	15	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5841641	A	A	5841641	3	1	105	1	0	0	0	0	1	0	0	0	11222	478	17	3	78	3	OR52N2	11	5841641	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	4058876	5841641	129164875	246	102500											
OR2D3	120775	broad.mit.edu	37	chr11	6942199	6942199	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcagttttaacatgaccctCttctacaagacttgatgtca	6	10	4	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6942199	A	A	6942199	1	1	105	0	1	0	0	0	0	0	0	0	11089	928	32	3		3	OR2D3	11	6942199	5'Flank	SNP	C	TCGA-44-2655-01A-01D-1553-08	1100558	6942199	128064317	247	102501											
IPO7	10527	broad.mit.edu	37	chr11	9463643	9463643	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatagctattcaaaatcgtaAtcctgtgtggtatcaggcac	9	8	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9463643	G	G	9463643	3	3	105	1	0	0	0	0	1	0	0	0	7867	101	4	5	3012	5	IPO7	11	9463643	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	2521444	9463643	125542873	248	102502											
SBF2	81846	broad.mit.edu	37	chr11	9917584	9917584	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaacaaagacaaaagaGcattaggatatttaccagaa	7	6	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9917584	A	A	9917584	1	1	105	0	1	0	0	0	0	0	0	0	13971	986	34	4		4	SBF2	11	9917584	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	453941	9917584	125088932	249	102503											
SOX6	55553	broad.mit.edu	37	chr11	15994629	15994629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggatacacaacacctgttCctgtggtgattggaatctga	10	9	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15994629	A	A	15994629	3	1	105	1	0	0	0	0	1	0	0	0	15069	855	30	3	277	3	SOX6	11	15994629	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	6077045	15994629	119011887	250	102504											
SOX6	55553	broad.mit.edu	37	chr11	16036456	16036456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttggaaacacatggagCagcagaaaagaactagagaa	10	6	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16036456	A	A	16036456	1	1	105	0	1	0	0	0	0	0	0	0	15069	725	25	3		3	SOX6	11	16036456	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	41827	16036456	118970060	251	102505											
E2F8	79733	broad.mit.edu	37	chr11	19247269	19247269	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatctggttagtgttttatGtgcactcacctgcaattggg	10	8	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19247269	A	A	19247269	1	1	105	0	1	0	0	0	0	0	0	0	4913	1392	48	4		4	E2F8	11	19247269	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	3210813	19247269	115759247	252	102506											
SLC6A5	9152	broad.mit.edu	37	chr11	20657998	20657998	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccatcagtctctatcccatGctcctcttgaagactccccc	4	18	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20657998	C	C	20657998	1	2	105	0	1	0	0	0	0	0	0	0	14801	1334	46	4		4	SLC6A5	11	20657998	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1410729	20657998	114348518	253	102507											
LDLRAD3	143458	broad.mit.edu	37	chr11	36250716	36250716	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccccatcacaggcctgcGtggtatgaccttcctccacc	8	17	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36250716	T	T	36250716	2	4	105	1	0	0	0	0	0	0	0	1	8779	1132	40	3		3	LDLRAD3	11	36250716	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	15592718	36250716	98755800	254	102508											
LRRC4C	57689	broad.mit.edu	37	chr11	40136265	40136265	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacacccaatgatgattttGgtagtcttcatgacctcatc	6	10	3	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40136265	T	T	40136265	2	4	105	1	0	0	0	0	0	0	0	1	9095	1335	47	2		2	LRRC4C	11	40136265	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	3885549	40136265	94870251	255	102509											
PEX16	9409	broad.mit.edu	37	chr11	45935823	45935823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacactccccactcaatccCcagcccacagtgccagccct	5	22	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45935823	A	A	45935823	1	1	105	0	1	0	0	0	0	0	0	0	11838	638	22	2		2	PEX16	11	45935823	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	5799558	45935823	89070693	256	102510											
OR4A47	403253	broad.mit.edu	37	chr11	48510590	48510590	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccagattgatttcaggCttgttctttgggaataattc	8	9	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48510590	A	A	48510590	2	1	105	1	0	0	0	0	0	0	0	1	11136	784	28	3		3	OR4A47	11	48510590	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	2574767	48510590	86495926	257	102511											
OR5D13	390142	broad.mit.edu	37	chr11	55540902	55540902	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataacttttttccttttaatCcaacaagtatcatgatggca	4	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55540902	A	A	55540902	1	1	105	0	1	0	0	0	0	0	0	0	11248	870	30	3		3	OR5D13	11	55540902	5'Flank	SNP	C	TCGA-44-2655-01A-01D-1553-08	7030312	55540902	79465614	258	102512											
OR5F1	338674	broad.mit.edu	37	chr11	55761412	55761412	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctctgtgcctcccctccccCgaatgcatagaaaaaatgga	8	14	1	1	rs144082157	byFrequency	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55761412	G	G	55761412	2	3	105	1	0	0	0	0	0	0	0	1	11252	639	23	4		4	OR5F1	11	55761412	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	220510	55761412	79245104	259	102513											
OR5AP2	338675	broad.mit.edu	37	chr11	56409316	56409316	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccatgatcacaatgccattGaagtgggtatcagagcaaga	11	8	2	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56409316	T	T	56409316	3	4	105	1	0	0	0	0	1	0	0	0	11238	1281	45	3	354	3	OR5AP2	11	56409316	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	647904	56409316	78597200	260	102514											
OR10W1	81341	broad.mit.edu	37	chr11	58035114	58035114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtagggtgttggccaGgatatggggcaccaccactg	15	9	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58035114	T	T	58035114	3	4	105	1	0	0	0	0	1	0	0	0	11015	991	35	2	704	2	OR10W1	11	58035114	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1625798	58035114	76971402	261	102515											
AHNAK	79026	broad.mit.edu	37	chr11	62287633	62287633	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttgatgtcagcttctggGcccttgaggtcaccttccac	9	15	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62287633	A	A	62287633	2	1	105	1	0	0	0	0	0	0	0	1	414	1190	42	4		4	AHNAK	11	62287633	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	4252519	62287633	72718883	262	102516											
NRXN2	9379	broad.mit.edu	37	chr11	64389989	64389989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaattctgggaatggtcCctctagaaatagtggtcacc	9	12	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64389989	A	A	64389989	1	1	105	0	1	0	0	0	0	0	0	0	10761	638	22	2		2	NRXN2	11	64389989	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	2102356	64389989	70616527	263	102517											
NRXN2	9379	broad.mit.edu	37	chr11	64419493	64419493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgtccacctccctgggCccagaccacctaccctccac	7	20	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64419493	A	A	64419493	1	1	105	0	1	0	0	0	0	0	0	0	10761	754	26	3		3	NRXN2	11	64419493	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	29504	64419493	70587023	264	102518											
C11orf68	83638	broad.mit.edu	37	chr11	65685409	65685409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcctgcaggccctgcaCgtccccggagttggggctgt	16	14	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65685409	A	A	65685409	3	1	105	1	0	0	0	0	1	0	0	0	1670	536	19	3	482	3	C11orf68	11	65685409	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	1265916	65685409	69321107	265	102519											
CTTN	2017	broad.mit.edu	37	chr11	70281077	70281077	+	Intron	DEL	G	-	-													ctgggttgtgctttttttctGgcagaccaggaaacgcttgc							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70281077	-	-	70281077	6	5	105	0	1	1	0	1	0	0	0	0	4078	1363	47	0		0	CTTN	11	70281077	Intron	DEL	G	TCGA-44-2655-01A-01D-1553-08	4595668	70281077	64725439	266	102520											
UCP3	7352	broad.mit.edu	37	chr11	73712393	73712393	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccatgtgtgcgtggatgcAccgttttcttccattcttaa	9	10	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73712393	T	T	73712393	1	4	105	0	1	0	0	0	0	0	0	0	17058	174	6	5		5	UCP3	11	73712393	3'UTR	SNP	A	TCGA-44-2655-01A-01D-1553-08	3431316	73712393	61294123	267	102521											
GRM5	2915	broad.mit.edu	37	chr11	88258686	88258686	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactctgtgccaaaatggggGttcctgcttctcaatgcaat	9	11	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88258686	C	C	88258686	1	2	105	0	1	0	0	0	0	0	0	0	6866	1276	44	4		4	GRM5	11	88258686	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	14546293	88258686	46747830	268	102522											
PAFAH1B2	5049	broad.mit.edu	37	chr11	117038323	117038323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttctgcatctgacaggaGggggctatgcaaagatctgc	12	8	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117038323	T	T	117038323	3	4	105	1	0	0	0	0	1	0	0	0	11479	1000	35	2	616	2	PAFAH1B2	11	117038323	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	28779637	117038323	17968193	269	102523											
CEP164	22897	broad.mit.edu	37	chr11	117265522	117265522	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggcacacagcgaggaagCctgagcccagagtggaggtt	17	9	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117265522	T	T	117265522	1	4	105	0	1	0	0	0	0	0	0	0	3279	754	26	4		4	CEP164	11	117265522	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	227199	117265522	17740994	270	102524											
SCN3B	55800	broad.mit.edu	37	chr11	123508905	123508905	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacttacgcgttttcttgGgctgcctcttcggcttttga	11	10	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123508905	T	T	123508905	2	4	105	1	0	0	0	0	0	0	0	1	14032	1219	43	2		2	SCN3B	11	123508905	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	6243383	123508905	11497611	271	102525											
KLRF1	51348	broad.mit.edu	37	chr12	9995128	9995128	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaaatagttactggtaCtacagaattcaaaagaatga	7	6	2	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9995128	G	G	9995128	1	3	105	0	1	0	0	0	0	0	0	0	8491	580	20	4		4	KLRF1	12	9995128	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08		9995128	123856767	272	102526											
CMAS	55907	broad.mit.edu	37	chr12	22214192	22214192	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtactgcacttgtactcaaAggtctattttggtttctttt	7	7	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22214192	T	T	22214192	1	4	105	0	1	0	0	0	0	0	0	0	3607	87	3	5		5	CMAS	12	22214192	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	12219064	22214192	111637703	273	102527											
DDX11	1663	broad.mit.edu	37	chr12	31249876	31249876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccaaggcttcctggcaGctctcactacggccaaccag	8	16	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31249876	T	T	31249876	3	4	105	1	0	0	0	0	1	0	0	0	4376	971	34	3	1776	3	DDX11	12	31249876	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	9035684	31249876	102602019	274	102528											
IRAK4	51135	broad.mit.edu	37	chr12	44180315	44180315	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctatgtactctgttgctagTcaatgtctgcatgaaaagaa	9	7	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44180315	C	C	44180315	2	2	105	1	0	0	0	0	0	0	0	1	7895	1664	58	5		5	IRAK4	12	44180315	Silent	SNP	T	TCGA-44-2655-01A-01D-1553-08	12930439	44180315	89671580	275	102529											
PCBP2	5094	broad.mit.edu	37	chr12	53853102	53853102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagctgccagtagaccccCggtcaccctgaggctggtgg	13	15	1	2	rs111807426		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53853102	T	T	53853102	3	4	105	1	0	0	0	0	1	0	0	0	11595	652	23	4	308	4	PCBP2	12	53853102	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	9672787	53853102	79998793	276	102530											
PAN2	9924	broad.mit.edu	37	chr12	56720127	56720127	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctggtgcggggattgggCgcatagccaatgaagcccac	15	11	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56720127	T	T	56720127	2	4	105	1	0	0	0	0	0	0	0	1	11508	755	27	4		4	PAN2	12	56720127	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	2867025	56720127	77131768	277	102531											
RBMS2	5939	broad.mit.edu	37	chr12	56963712	56963712	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtagattttgacagccctTcagcagcacagaaagctgta	9	9	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56963712	C	C	56963712	3	2	105	1	0	0	0	0	1	0	0	0	13257	1783	62	5	336	5	RBMS2	12	56963712	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	243585	56963712	76888183	278	102532											
NACA	4666	broad.mit.edu	37	chr12	57114346	57114346	+	Intron	DEL	A	-	-													cactaggacctgtttgacctAaaagttggacagaaccaaaa							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57114346	-	-	57114346	6	5	105	0	1	1	0	1	0	0	0	0	10227	372	13	0		0	NACA	12	57114346	Intron	DEL	A	TCGA-44-2655-01A-01D-1553-08	150634	57114346	76737549	279	102533											
INHBC	3626	broad.mit.edu	37	chr12	57843212	57843212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgagagtccttgtgctgGgtccacataataccaacctc	9	11	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57843212	T	T	57843212	3	4	105	1	0	0	0	0	1	0	0	0	7813	1232	43	2	472	2	INHBC	12	57843212	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	728866	57843212	76008683	280	102534											
ANKS1B	56899	broad.mit.edu	37	chr12	99640640	99640640	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcatcctgtcgggagaggtCatctgcaaaaggaaggaagg	15	7	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99640640	A	A	99640640	3	1	105	1	0	0	0	0	1	0	0	0	689	826	29	3	2331	3	ANKS1B	12	99640640	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	41797428	99640640	34211255	281	102535											
SLC17A8	246213	broad.mit.edu	37	chr12	100787146	100787146	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaatgctttggtcccccaGggtctttggagctgccatct	10	13	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100787146	A	A	100787146	5	1	105	1	0	0	0	0	0	0	1	0	14536	1014	35	4	487	4	SLC17A8	12	100787146	Splice_Site	SNP	G	TCGA-44-2655-01A-01D-1553-08	1146506	100787146	33064749	282	102536											
SLC17A8	246213	broad.mit.edu	37	chr12	100787197	100787197	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactctgaacatgtttattcCctctgcagccagagtgcatt	8	11	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100787197	T	T	100787197	3	4	105	1	0	0	0	0	1	0	0	0	14536	623	22	4	538	4	SLC17A8	12	100787197	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	51	100787197	33064698	283	102537											
POLR3B	55703	broad.mit.edu	37	chr12	106821053	106821053	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgccgaccaggtgattcctAagcaaagagcagcccagttt	10	11	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106821053	T	T	106821053	4	4	105	1	0	0	0	0	0	1	0	0	12324	363	13	5	1230	5	POLR3B	12	106821053	Nonsense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	6033856	106821053	27030842	284	102538											
TRPV4	59341	broad.mit.edu	37	chr12	110224614	110224614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaatacggggaaggagCgctcaatgtccaggatggtg	16	7	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110224614	A	A	110224614	3	1	105	1	0	0	0	0	1	0	0	0	16723	768	27	3	390	3	TRPV4	12	110224614	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	3403561	110224614	23627281	285	102539											
CUX2	23316	broad.mit.edu	37	chr12	111779890	111779890	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtacccacaggcgggtGgcagaatccaggtgggaccc	17	12	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111779890	A	A	111779890	1	1	105	0	1	0	0	0	0	0	0	0	4098	1363	47	4		4	CUX2	12	111779890	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1555276	111779890	22072005	286	102540											
TBX5	6910	broad.mit.edu	37	chr12	114804095	114804095	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actggtattgggaccccaaaTtggatgaggtggagagagct	15	6	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114804095	A	A	114804095	3	1	105	1	0	0	0	0	1	0	0	0	15783	1493	52	5	774	5	TBX5	12	114804095	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	3024205	114804095	19047800	287	102541											
OGFOD2	79676	broad.mit.edu	37	chr12	123463132	123463132	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggggtgggtgaggcctggCcggtggcagaggagggggtg	25	6	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123463132	T	T	123463132	1	4	105	0	1	0	0	0	0	0	0	0	10937	754	26	4		4	OGFOD2	12	123463132	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	8659037	123463132	10388763	288	102542											
TMEM132B	114795	broad.mit.edu	37	chr12	126137133	126137133	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgagcagacaaaagggccatCgtctccacagctgctgccct	10	15	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126137133	A	A	126137133	2	1	105	1	0	0	0	0	0	0	0	1	16169	874	31	3		3	TMEM132B	12	126137133	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	2674001	126137133	7714762	289	102543											
FZD10	11211	broad.mit.edu	37	chr12	130648791	130648791	+	Frame_Shift_Del	DEL	A	-	-													gacgggcggcgagaacacggAcaagctggagaagctcatgg							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130648791	-	-	130648791	7	5	105	1	0	1	0	1	0	0	0	0	6189	275	10	0	1306	0	FZD10	12	130648791	Frame_Shift_Del	DEL	A	TCGA-44-2655-01A-01D-1553-08	4511658	130648791	3203104	290	102544											
EP400	57634	broad.mit.edu	37	chr12	132514758	132514758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtcactggtgttgaatGcctaagtgctgtgtaaattc	11	7	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132514758	T	T	132514758	1	4	105	0	1	0	0	0	0	0	0	0	5191	1334	46	3		3	EP400	12	132514758	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1865967	132514758	1337137	291	102545											
ANKLE2	23141	broad.mit.edu	37	chr12	133317910	133317910	+	Intron	SNP	G	A	A													ggagccggcacacgcccgggGagctcaggaaagcaaagctc							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133317910	A	A	133317910	1	1	105	0	1	0	0	0	0	0	0	0	633	1189	41	4		4	ANKLE2	12	133317910	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	803152	133317910	533985	292	102546	447	2									
ANKLE2	23141	broad.mit.edu	37	chr12	133317912	133317912	+	Intron	SNP	G	C	C													agccggcacacgcccggggaGctcaggaaagcaaagctctg							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133317912	C	C	133317912	1	2	105	0	1	0	0	0	0	0	0	0	633	986	34	4		4	ANKLE2	12	133317912	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2	133317912	533983	293	102547	447	2									
SACS	26278	broad.mit.edu	37	chr13	23915491	23915491	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccaagtttttgtacaatgtCtgctaaaaattctggaagct	7	7	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23915491	A	A	23915491	3	1	105	1	0	0	0	0	1	0	0	0	13915	913	32	3	11219	3	SACS	13	23915491	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08		23915491	91254387	294	102548											
ATP8A2	51761	broad.mit.edu	37	chr13	26114361	26114361	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatttattttgaagggccAatcagcagacacagattcca	7	9	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26114361	G	G	26114361	1	3	105	0	1	0	0	0	0	0	0	0	1197	145	5	5		5	ATP8A2	13	26114361	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	2198870	26114361	89055517	295	102549											
ZC3H13	23091	broad.mit.edu	37	chr13	46619113	46619113	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctataattgctgctataaccTttaccacgaggtgaagggcc	9	10	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46619113	C	C	46619113	2	2	105	1	0	0	0	0	0	0	0	1	17691	1606	56	5		5	ZC3H13	13	46619113	Silent	SNP	T	TCGA-44-2655-01A-01D-1553-08	20504752	46619113	68550765	296	102550											
CYSLTR2	57105	broad.mit.edu	37	chr13	49281203	49281203	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctaaatctggccatttcaGatctcctgttcataagcacg	7	11	4	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49281203	C	C	49281203	3	2	105	1	0	0	0	0	1	0	0	0	4235	942	33	4	252	4	CYSLTR2	13	49281203	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	2662090	49281203	65888675	297	102551											
VPS36	51028	broad.mit.edu	37	chr13	53016600	53016600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagaaagaaagagcatcaCaaaatattaataacatatca	4	6	3	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53016600	A	A	53016600	1	1	105	0	1	0	0	0	0	0	0	0	17331	493	17	3		3	VPS36	13	53016600	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	3735397	53016600	62153278	298	102552											
LECT1	11061	broad.mit.edu	37	chr13	53298303	53298303	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcatttattcgatttattGagtgtctactgtgttccaga	8	6	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53298303	T	T	53298303	1	4	105	0	1	0	0	0	0	0	0	0	8784	1305	45	3		3	LECT1	13	53298303	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	281703	53298303	61871575	299	102553											
PCDH17	27253	broad.mit.edu	37	chr13	58299497	58299497	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaaatgatccctcctgGtgataacccattttacaggg	7	9	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58299497	T	T	58299497	1	4	105	0	1	0	0	0	0	0	0	0	11606	1276	44	3		3	PCDH17	13	58299497	3'UTR	SNP	G	TCGA-44-2655-01A-01D-1553-08	5001194	58299497	56870381	300	102554											
DCT	1638	broad.mit.edu	37	chr13	95112521	95112521	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgacaacagacaaagactGataaaggtctcttttttgtt	8	6	1	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95112521	A	A	95112521	1	1	105	0	1	0	0	0	0	0	0	0	4337	1305	45	4		4	DCT	13	95112521	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	36813024	95112521	20057357	301	102555											
DZIP1	22873	broad.mit.edu	37	chr13	96274626	96274626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaagctgcatgacattatGgaaatcctggggatatggag	13	5	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96274626	A	A	96274626	3	1	105	1	0	0	0	0	1	0	0	0	4903	1348	47	4	1582	4	DZIP1	13	96274626	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1162105	96274626	18895252	302	102556											
NALCN	259232	broad.mit.edu	37	chr13	101755531	101755531	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctcacataccaaaaaaaTttccttgaagccgctgaaaa	4	10	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101755531	A	A	101755531	3	1	105	1	0	0	0	0	1	0	0	0	10242	1493	52	5	2243	5	NALCN	13	101755531	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	5480905	101755531	13414347	303	102557											
NALCN	259232	broad.mit.edu	37	chr13	101910743	101910743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctaagaggcactgtccGcggttcacctgctccttgcc	9	15	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101910743	T	T	101910743	1	4	105	0	1	0	0	0	0	0	0	0	10242	1102	38	3		3	NALCN	13	101910743	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	155212	101910743	13259135	304	102558											
COL4A1	1282	broad.mit.edu	37	chr13	110851020	110851021	+	Intron	INS	-	T	T													atcagtaacctcagggccacINSttagcaactacagcataaac							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110851021	T	T	110851020	6	5	105	0	1	1	1	0	0	0	0	0	3721	580	20	0		0	COL4A1	13	110851020	Intron	INS	-	TCGA-44-2655-01A-01D-1553-08	8940277	110851020	4318858	305	102559											
TMEM55B	90809	broad.mit.edu	37	chr14	20927981	20927981	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtccctgttccacatccCccactccctgtctattaagt	4	17	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20927981	A	A	20927981	1	1	105	0	1	0	0	0	0	0	0	0	16305	638	22	2		2	TMEM55B	14	20927981	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08		20927981	86421559	306	102560											
MYH6	4624	broad.mit.edu	37	chr14	23857979	23857979	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgtctcttccacttcCgtctcatgaccactttgcct	4	18	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23857979	T	T	23857979	1	4	105	0	1	0	0	0	0	0	0	0	10132	667	23	4		4	MYH6	14	23857979	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	2929998	23857979	83491561	307	102561											
NYNRIN	57523	broad.mit.edu	37	chr14	24885288	24885288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgacagtggacaccctgGccaagcagggtgcccagggg	16	12	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24885288	T	T	24885288	3	4	105	1	0	0	0	0	1	0	0	0	10891	1203	42	3	4363	3	NYNRIN	14	24885288	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1027309	24885288	82464252	308	102562											
KCNH5	27133	broad.mit.edu	37	chr14	63246645	63246645	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatacatcacccttccctAgaaaacagtataagatacat	3	11	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63246645	T	T	63246645	1	4	105	0	1	0	0	0	0	0	0	0	8105	435	15	5		5	KCNH5	14	63246645	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	38361357	63246645	44102895	309	102563											
PAPLN	89932	broad.mit.edu	37	chr14	73725989	73725989	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctagactccagaggccAgtggtgggcagcccaggaac	13	12	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73725989	G	G	73725989	3	3	105	1	0	0	0	0	1	0	0	0	11522	188	7	5	1694	5	PAPLN	14	73725989	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	10479344	73725989	33623551	310	102564											
ADCK1	57143	broad.mit.edu	37	chr14	78353334	78353334	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctctctcaaatctgtccTgggggcactaggcagccctg	10	13	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78353334	A	A	78353334	1	1	105	0	1	0	0	0	0	0	0	0	288	1595	55	5		5	ADCK1	14	78353334	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	4627345	78353334	28996206	311	102565											
FLRT2	23768	broad.mit.edu	37	chr14	86089492	86089492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccctttctgctggcggGcttgatcgggggcgcggtga	16	13	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86089492	T	T	86089492	3	4	105	1	0	0	0	0	1	0	0	0	5997	1203	42	3	1636	3	FLRT2	14	86089492	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	7736158	86089492	21260048	312	102566											
BTBD7	55727	broad.mit.edu	37	chr14	93755061	93755061	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtagtctcctctgtaaaAcaaatggaaggcaagctggc	10	9	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93755061	G	G	93755061	1	3	105	0	1	0	0	0	0	0	0	0	1556	58	2	5		5	BTBD7	14	93755061	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	7665569	93755061	13594479	313	102567											
SERPINA12	145264	broad.mit.edu	37	chr14	94964180	94964180	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgttaattttcccatgGgttttttgactgataaagtc	9	5	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94964180	T	T	94964180	2	4	105	1	0	0	0	0	0	0	0	1	14202	1219	43	2		2	SERPINA12	14	94964180	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	1209119	94964180	12385360	314	102568											
SERPINA4	5267	broad.mit.edu	37	chr14	95034546	95034546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagatcagattttgcccaGgctgggcttcacggatctgt	11	9	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95034546	T	T	95034546	3	4	105	1	0	0	0	0	1	0	0	0	14204	1000	35	2	1014	2	SERPINA4	14	95034546	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	70366	95034546	12314994	315	102569											
HHIPL1	84439	broad.mit.edu	37	chr14	100123170	100123170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaagaaagaaagaaagaAagaaaggaaggaaggaagga	14	0	0	6			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100123170	G	G	100123170	1	3	105	0	1	0	0	0	0	0	0	0	7160	29	1	5		5	HHIPL1	14	100123170	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	5088624	100123170	7226370	316	102570											
AHNAK2	113146	broad.mit.edu	37	chr14	105414735	105414735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggaggggaggctcacGtcggcctccaccttcaacgc	13	14	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105414735	T	T	105414735	3	4	105	1	0	0	0	0	1	0	0	0	415	1136	40	3	10338	3	AHNAK2	14	105414735	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	5291565	105414735	1934805	317	102571											
MKRN3	7681	broad.mit.edu	37	chr15	23811566	23811566	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgttccagggcagccctacCggggccgctgggttgcatct	14	13	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23811566	G	G	23811566	3	3	105	1	0	0	0	0	1	0	0	0	9701	643	23	4	639	4	MKRN3	15	23811566	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08		23811566	78719826	318	102572											
SNRPN	6638	broad.mit.edu	37	chr15	25213283	25213283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcattaaagaatggggtGttgggggttctcttaattat	12	3	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25213283	T	T	25213283	1	4	105	0	1	0	0	0	0	0	0	0	14984	1392	48	3		3	SNRPN	15	25213283	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1401717	25213283	77318109	319	102573											
OCA2	4948	broad.mit.edu	37	chr15	28228719	28228719	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatttttaaggcgcttgctCgtataagggaggcgcgcaca	13	8	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28228719	A	A	28228719	1	1	105	0	1	0	0	0	0	0	0	0	10910	899	31	3		3	OCA2	15	28228719	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	3015436	28228719	74302673	320	102574											
HERC2	8924	broad.mit.edu	37	chr15	28544753	28544753	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaaaatctcaatccccCttatgtattcgatcatttgg	6	9	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28544753	G	G	28544753	1	3	105	0	1	0	0	0	0	0	0	0	7125	696	24	4		4	HERC2	15	28544753	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	316034	28544753	73986639	321	102575											
APBA2	321	broad.mit.edu	37	chr15	29398755	29398755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctcctgtgggtccttgGcagaggcctcggtccttgcc	12	15	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29398755	T	T	29398755	1	4	105	0	1	0	0	0	0	0	0	0	759	1218	42	3		3	APBA2	15	29398755	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	854002	29398755	73132637	322	102576											
TRPM1	4308	broad.mit.edu	37	chr15	31362381	31362381	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatttttgctgggtgttgcActtggcagaggggggatatg	16	5	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31362381	T	T	31362381	3	4	105	1	0	0	0	0	1	0	0	0	16710	156	6	5	4845	5	TRPM1	15	31362381	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	1963626	31362381	71169011	323	102577											
RYR3	6263	broad.mit.edu	37	chr15	33945030	33945030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtctcgtggatctggcCatgggcatgttgtccttctc	13	11	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33945030	A	A	33945030	2	1	105	1	0	0	0	0	0	0	0	1	13881	581	21	2		2	RYR3	15	33945030	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	2582649	33945030	68586362	324	102578											
RYR3	6263	broad.mit.edu	37	chr15	34028578	34028578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattgcacaggaaacttgcCttgtaatatgtgatgtcttc	8	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34028578	A	A	34028578	1	1	105	0	1	0	0	0	0	0	0	0	13881	696	24	2		2	RYR3	15	34028578	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	83548	34028578	68502814	325	102579											
RYR3	6263	broad.mit.edu	37	chr15	34034668	34034668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggattatcatccaactgaCaatcgtcaggaaggaaaaac	9	8	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34034668	A	A	34034668	1	1	105	0	1	0	0	0	0	0	0	0	13881	493	17	3		3	RYR3	15	34034668	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	6090	34034668	68496724	326	102580											
BUB1B	701	broad.mit.edu	37	chr15	40505762	40505762	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttcttttttgaggcgagGgtctcactctgtcacctagg	10	9	4	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40505762	C	C	40505762	1	2	105	0	1	0	0	0	0	0	0	0	1581	1247	43	4		4	BUB1B	15	40505762	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	6471094	40505762	62025630	327	102581											
PLEKHO2	80301	broad.mit.edu	37	chr15	65153785	65153785	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgaaggaggtagggccttAcccagtgtggatgttggggt	17	7	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65153785	T	T	65153785	1	4	105	0	1	0	0	0	0	0	0	0	12180	406	14	5		5	PLEKHO2	15	65153785	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	24648023	65153785	37377607	328	102582											
TLE3	7090	broad.mit.edu	37	chr15	70344664	70344664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttgggccaggctgccCtgggttccccaccccactcc	10	19	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70344664	T	T	70344664	1	4	105	0	1	0	0	0	0	0	0	0	16063	696	24	4		4	TLE3	15	70344664	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	5190879	70344664	32186728	329	102583											
STRA6	64220	broad.mit.edu	37	chr15	74473361	74473361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccctaacacacacacagGgagtgcacgtgcactccctg	8	16	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74473361	T	T	74473361	1	4	105	0	1	0	0	0	0	0	0	0	15440	1247	43	2		2	STRA6	15	74473361	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	4128697	74473361	28058031	330	102584											
FBXO22	26263	broad.mit.edu	37	chr15	76205682	76205682	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttttttatcatgtgccttCcgttcggagttcaatattat	7	7	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76205682	T	T	76205682	1	4	105	0	1	0	0	0	0	0	0	0	5791	870	30	4		4	FBXO22	15	76205682	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1732321	76205682	26325710	331	102585											
CHRNB4	1143	broad.mit.edu	37	chr15	78921890	78921890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggatggcaggtagaagaCgaggatggccagcaaggtgg	19	6	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78921890	A	A	78921890	3	1	105	1	0	0	0	0	1	0	0	0	3424	536	19	3	747	3	CHRNB4	15	78921890	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	2716208	78921890	23609502	332	102586											
KIAA1024	23251	broad.mit.edu	37	chr15	79750731	79750731	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtgggcctcaatgaggagGagataaaagacacaggccca	14	8	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79750731	A	A	79750731	3	1	105	1	0	0	0	0	1	0	0	0	8275	1175	41	4	2244	4	KIAA1024	15	79750731	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	828841	79750731	22780661	333	102587											
IL16	3603	broad.mit.edu	37	chr15	81592014	81592015	+	Missense_Mutation	DNP	CC	AA	AA													gcagcactgtgaagaaaggtCctcctgtggctcccaagcca							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	81592015	AA	AA	81592014	3	1	105	1	0	0	0	0	1	0	0	0	7703	855	30	3	2397	3	IL16	15	81592014	Missense_Mutation	DNP	CC	TCGA-44-2655-01A-01D-1553-08	1841283	81592014	20939378	334	102588											
HDGFRP3	50810	broad.mit.edu	37	chr15	83826167	83826167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagaagtttcttagtaacCtttgaagtatatgacttttt	7	4	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83826167	A	A	83826167	3	1	105	1	0	0	0	0	1	0	0	0	7088	695	24	2	164	2	HDGFRP3	15	83826167	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	2234153	83826167	18705225	335	102589											
LRRC28	123355	broad.mit.edu	37	chr15	99799093	99799093	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagatgacttccgtgataCgatgcctaagaacctgaatt	8	10	0	5			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99799093	T	T	99799093	1	4	105	0	1	0	0	0	0	0	0	0	9069	551	19	4		4	LRRC28	15	99799093	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	15972926	99799093	2732299	336	102590											
ADAMTS17	170691	broad.mit.edu	37	chr15	100588974	100588974	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagcatagagcagtactgTggcattaactgcatatcact	8	10	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100588974	C	C	100588974	1	2	105	0	1	0	0	0	0	0	0	0	262	1711	59	5		5	ADAMTS17	15	100588974	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	789881	100588974	1942418	337	102591											
LASS3	204219	broad.mit.edu	37	chr15	101020170	101020170	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattaaagacaaattccaatCgaagatataaaaagataact	4	5	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101020170	A	A	101020170	1	1	105	0	1	0	0	0	0	0	0	0	8712	899	31	3		3	LASS3	15	101020170	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	431196	101020170	1511222	338	102592											
NOMO1	23420	broad.mit.edu	37	chr16	14982998	14982998	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactccccagatcccagtatGactacatcttgcctcaagtt	5	15	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14982998	T	T	14982998	3	4	105	1	0	0	0	0	1	0	0	0	10626	1290	45	3	3484	3	NOMO1	16	14982998	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08		14982998	75371755	339	102593											
SMG1	23049	broad.mit.edu	37	chr16	18881188	18881188	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccttaccctgttctatgaGagttcccatacaaaataaaa	5	10	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18881188	C	C	18881188	3	2	105	1	0	0	0	0	1	0	0	0	14909	942	33	4	8544	4	SMG1	16	18881188	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	3898190	18881188	71473565	340	102594											
UMOD	7369	broad.mit.edu	37	chr16	20352502	20352502	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgagcagtgcaaatcgggaCaggtcgcccccatccaacat	10	13	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20352502	G	G	20352502	2	3	105	1	0	0	0	0	0	0	0	1	17105	465	17	4		4	UMOD	16	20352502	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	1471314	20352502	70002251	341	102595											
DCUN1D3	123879	broad.mit.edu	37	chr16	20873933	20873933	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccgctggcccatgtaccTcaacatgccatcagccagag	9	16	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20873933	A	A	20873933	1	1	105	0	1	0	0	0	0	0	0	0	4348	1566	54	5		5	DCUN1D3	16	20873933	5'UTR	SNP	T	TCGA-44-2655-01A-01D-1553-08	521431	20873933	69480820	342	102596											
POLR3E	55718	broad.mit.edu	37	chr16	22314477	22314477	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccctctgctgtcccccAgacccctgcgtggctgacct	10	19	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22314477	C	C	22314477	1	2	105	0	1	0	0	0	0	0	0	0	12327	203	7	5		5	POLR3E	16	22314477	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	1440544	22314477	68040276	343	102597											
KCTD13	253980	broad.mit.edu	37	chr16	29918494	29918494	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgcagggccatccccctgCctagggcccctgcaccaaca	9	20	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29918494	T	T	29918494	1	4	105	0	1	0	0	0	0	0	0	0	8170	754	26	4		4	KCTD13	16	29918494	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	7604017	29918494	60436259	344	102598											
SLC9A5	6553	broad.mit.edu	37	chr16	67290781	67290781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtcctccactcccaacGctttgctcccactggcctcc	5	22	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67290781	T	T	67290781	1	4	105	0	1	0	0	0	0	0	0	0	14831	1102	38	3		3	SLC9A5	16	67290781	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	37372287	67290781	23063972	345	102599											
CTCF	10664	broad.mit.edu	37	chr16	67662413	67662413	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccccaacttcgtccctgcGgcttttgtctgttctaagtg	9	13	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67662413	T	T	67662413	2	4	105	1	0	0	0	0	0	0	0	1	4034	1103	39	1		1	CTCF	16	67662413	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	371632	67662413	22692340	346	102600											
CTCF	10664	broad.mit.edu	37	chr16	67663408	67663408	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaaaaagaaagatgcgCtctaagaaagaagattcctc	10	6	1	6			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67663408	T	T	67663408	2	4	105	1	0	0	0	0	0	0	0	1	4034	784	28	4		4	CTCF	16	67663408	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	995	67663408	22691345	347	102601											
ACD	65057	broad.mit.edu	37	chr16	67692098	67692102	+	Frame_Shift_Del	DEL	CGTGT	-	-													ggagctgggggtacggctggCgtgtggggacctgggggtca							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67692102	-	-	67692098	7	5	105	1	0	1	0	1	0	0	0	0	135	768	27	0	391	0	ACD	16	67692098	Frame_Shift_Del	DEL	CGTGT	TCGA-44-2655-01A-01D-1553-08	28690	67692098	22662655	348	102602											
PDPR	55066	broad.mit.edu	37	chr16	70177370	70177370	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatgtggcccagccaggtGctctcacgctcactctctct	9	17	4	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70177370	C	C	70177370	1	2	105	0	1	0	0	0	0	0	0	0	11783	1334	46	4		4	PDPR	16	70177370	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2485272	70177370	20177383	349	102603											
DNAH2	146754	broad.mit.edu	37	chr17	7681838	7681838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttaaataccttttcgtcCcagaaaataaactgaaaccc	3	13	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7681838	A	A	7681838	1	1	105	0	1	0	0	0	0	0	0	0	4642	638	22	2		2	DNAH2	17	7681838	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08		7681838	73513372	350	102604											
C17orf68	80169	broad.mit.edu	37	chr17	8136414	8136414	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatactgagcatctactattTgccagatgctgtattacatg	7	8	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8136414	A	A	8136414	1	1	105	0	1	0	0	0	0	0	0	0	1892	1827	63	5		5	C17orf68	17	8136414	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	454576	8136414	73058796	351	102605											
MYH4	4622	broad.mit.edu	37	chr17	10357299	10357299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcagtgactacctgtttGgtcaacatgtataccagttg	8	8	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10357299	T	T	10357299	1	4	105	0	1	0	0	0	0	0	0	0	10131	1363	47	2		2	MYH4	17	10357299	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2220885	10357299	70837911	352	102606											
DNAH9	1770	broad.mit.edu	37	chr17	11656186	11656186	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgcgggagcttgccaacaTcacccatgatgggcccaagt	11	13	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11656186	A	A	11656186	3	1	105	1	0	0	0	0	1	0	0	0	4648	1435	50	5	6777	5	DNAH9	17	11656186	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	1298887	11656186	69539024	353	102607											
COX10	1352	broad.mit.edu	37	chr17	14095188	14095188	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatatccaggaatcagccaGatcagtactgcctctactgg	8	13	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14095188	A	A	14095188	1	1	105	0	1	0	0	0	0	0	0	0	3794	957	33	4		4	COX10	17	14095188	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2439002	14095188	67100022	354	102608											
LGALS9C	654346	broad.mit.edu	37	chr17	18393832	18393832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcgagaggaaccagtggGgataccctacccctcaaccc	9	16	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18393832	T	T	18393832	1	4	105	0	1	0	0	0	0	0	0	0	8822	1247	43	2		2	LGALS9C	17	18393832	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	4298644	18393832	62801378	355	102609											
FLOT2	2319	broad.mit.edu	37	chr17	27209238	27209238	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttcacatccagcatctcCttcttgcactcagcttcctg	4	16	4	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27209238	T	T	27209238	2	4	105	1	0	0	0	0	0	0	0	1	5995	680	24	4		4	FLOT2	17	27209238	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	8815406	27209238	53985972	356	102610											
JUP	3728	broad.mit.edu	37	chr17	39921347	39921347	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaagagggaatgagtgtgaGatggacggggaatatgacag	17	2	0	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39921347	C	C	39921347	1	2	105	0	1	0	0	0	0	0	0	0	8042	957	33	4		4	JUP	17	39921347	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	12712109	39921347	41273863	357	102611											
CCDC56	28958	broad.mit.edu	37	chr17	40948054	40948054	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagagtcttcggcagaagtGagtctcgggaggatggagga	18	6	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40948054	A	A	40948054	2	1	105	1	0	0	0	0	0	0	0	1	2854	1305	45	4		4	CCDC56	17	40948054	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	1026707	40948054	40247156	358	102612											
UTP18	51096	broad.mit.edu	37	chr17	49350592	49350592	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttgccagttgcagctttAaaaaaagcaattgaggtagg	10	6	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49350592	T	T	49350592	1	4	105	0	1	0	0	0	0	0	0	0	17225	377	13	5		5	UTP18	17	49350592	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	8402538	49350592	31844618	359	102613											
UTP18	51096	broad.mit.edu	37	chr17	49357467	49357467	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatttgctagcaatgaagGtaaagcattattattgcttc	8	6	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49357467	T	T	49357467	5	4	105	1	0	0	0	0	0	0	1	0	17225	1275	44	3	1144	3	UTP18	17	49357467	Splice_Site	SNP	G	TCGA-44-2655-01A-01D-1553-08	6875	49357467	31837743	360	102614											
INTS2	57508	broad.mit.edu	37	chr17	60002319	60002319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtggttaaaagaaatgCaccttgttcataattgccaa	8	7	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60002319	A	A	60002319	1	1	105	0	1	0	0	0	0	0	0	0	7848	725	25	3		3	INTS2	17	60002319	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	10644852	60002319	21192891	361	102615											
CACNG5	27091	broad.mit.edu	37	chr17	64873682	64873682	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggggacagccctgccccCtgacatcacctgccccaaga	10	17	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64873682	T	T	64873682	1	4	105	0	1	0	0	0	0	0	0	0	2586	696	24	4		4	CACNG5	17	64873682	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	4871363	64873682	16321528	362	102616											
ANAPC11	51529	broad.mit.edu	37	chr17	79857813	79857813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggcaaggtgcccggcgacGactgcccgctggtgtggggc	18	12	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79857813	T	T	79857813	3	4	105	1	0	0	0	0	1	0	0	0	600	1058	37	3	438	3	ANAPC11	17	79857813	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	14984131	79857813	1337397	363	102617											
MC5R	4161	broad.mit.edu	37	chr18	13826463	13826463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcgcggcagaggaccagCatgcagggcgcggtcaccgt	16	13	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13826463	A	A	13826463	3	1	105	1	0	0	0	0	1	0	0	0	9460	709	25	3	701	3	MC5R	18	13826463	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08		13826463	64250785	364	102618											
DTNA	1837	broad.mit.edu	37	chr18	32405141	32405142	+	Intron	INS	-	T	T													caggtggtgacattttggtaINSttttgacatttgttcttagc							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32405142	T	T	32405141	6	5	105	0	1	1	1	0	0	0	0	0	4828	464	16	0		0	DTNA	18	32405141	Intron	INS	-	TCGA-44-2655-01A-01D-1553-08	18578678	32405141	45672107	365	102619											
DTNA	1837	broad.mit.edu	37	chr18	32446130	32446130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgcaggtcttaactaaCagtggaggggcctgccgacc	12	12	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32446130	A	A	32446130	1	1	105	0	1	0	0	0	0	0	0	0	4828	493	17	3		3	DTNA	18	32446130	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	40989	32446130	45631118	366	102620											
CCDC102B	79839	broad.mit.edu	37	chr18	66564797	66564797	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctaatacctgatactcctTgctcttttgcccactaggat	6	12	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66564797	G	G	66564797	1	3	105	0	1	0	0	0	0	0	0	0	2763	1827	63	5		5	CCDC102B	18	66564797	Intron	SNP	T	TCGA-44-2655-01A-01D-1553-08	34118667	66564797	11512451	367	102621											
NETO1	81832	broad.mit.edu	37	chr18	70417550	70417550	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtgatccacagtgatggtCatgaatgcatttggaagatg	12	6	1	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70417550	G	G	70417550	3	3	105	1	0	0	0	0	1	0	0	0	10434	826	29	4	321	4	NETO1	18	70417550	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	3852753	70417550	7659698	368	102622											
THEG	51298	broad.mit.edu	37	chr19	374030	374030	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcgaggagacagggtcCgagccccactgcctcttgcc	12	16	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	374030	T	T	374030	1	4	105	0	1	0	0	0	0	0	0	0	15980	667	23	4		4	THEG	19	374030	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08		374030	58754953	369	102623											
CREB3L3	84699	broad.mit.edu	37	chr19	4154888	4154888	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctcacatctgttcctcgCgccccagatggcttctgctg	8	17	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4154888	T	T	4154888	1	4	105	0	1	0	0	0	0	0	0	0	3890	783	27	4		4	CREB3L3	19	4154888	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	3780858	4154888	54974095	370	102624											
TMEM146	257062	broad.mit.edu	37	chr19	5776096	5776096	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactggggtgggtgcagggcCtccgcagggaggagggaggc	23	8	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5776096	T	T	5776096	1	4	105	0	1	0	0	0	0	0	0	0	16183	696	24	4		4	TMEM146	19	5776096	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1621208	5776096	53352887	371	102625											
MUC16	94025	broad.mit.edu	37	chr19	9046706	9046706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttggaatagctgtactaGtgtctgttgcagaactagtg	12	5	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9046706	T	T	9046706	3	4	105	1	0	0	0	0	1	0	0	0	10067	1029	36	3	8918	3	MUC16	19	9046706	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	3270610	9046706	50082277	372	102626											
MUC16	94025	broad.mit.edu	37	chr19	9061615	9061615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtgaactggtttcagGttctgagcttgtgcgcaaca	14	7	2	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9061615	T	T	9061615	3	4	105	1	0	0	0	0	1	0	0	0	10067	1261	44	3	18020	3	MUC16	19	9061615	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	14909	9061615	50067368	373	102627											
MUC16	94025	broad.mit.edu	37	chr19	9089295	9089295	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgactccagagacacttggGaggctgagagtgctaggact	14	8	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9089295	T	T	9089295	2	4	105	1	0	0	0	0	0	0	0	1	10067	1161	41	3		3	MUC16	19	9089295	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	27680	9089295	50039688	374	102628											
KEAP1	9817	broad.mit.edu	37	chr19	10610279	10610279	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acttctcgcccatggagatgGaggccgtgtaggcgaattca	13	10	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610279	A	A	10610279	3	1	105	1	0	0	0	0	1	0	0	0	8211	1174	41	4	1463	4	KEAP1	19	10610279	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1520984	10610279	48518704	375	102629											
ZNF492	57615	broad.mit.edu	37	chr19	22817160	22817160	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagtcggagtatggtctAgtgttcgctgttctgcgtcc	13	10	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22817160	G	G	22817160	1	3	105	0	1	0	0	0	0	0	0	0	18070	435	15	5		5	ZNF492	19	22817160	5'UTR	SNP	A	TCGA-44-2655-01A-01D-1553-08	12206881	22817160	36311823	376	102630											
TMEM149	79713	broad.mit.edu	37	chr19	36236382	36236382	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcgttgccctctccaggCgcttaccaagcgctcggaaa	10	14	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36236382	A	A	36236382	1	1	105	0	1	0	0	0	0	0	0	0	16185	783	27	3		3	TMEM149	19	36236382	5'Flank	SNP	C	TCGA-44-2655-01A-01D-1553-08	13419222	36236382	22892601	377	102631											
ZNF566	84924	broad.mit.edu	37	chr19	36963641	36963641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataagaggagaaaagcaggCaaagtgtgttaggtaaaggg	16	2	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36963641	A	A	36963641	1	1	105	0	1	0	0	0	0	0	0	0	18124	725	25	3		3	ZNF566	19	36963641	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	727259	36963641	22165342	378	102632											
ZNF527	84503	broad.mit.edu	37	chr19	37880895	37880895	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcatatttcagttcatgaGtatccgttatttgaagtagc	8	6	3	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37880895	T	T	37880895	1	4	105	0	1	0	0	0	0	0	0	0	18095	1044	36	3		3	ZNF527	19	37880895	3'UTR	SNP	G	TCGA-44-2655-01A-01D-1553-08	917254	37880895	21248088	379	102633											
CEACAM7	1087	broad.mit.edu	37	chr19	42191008	42191009	+	Missense_Mutation	DNP	CC	AA	AA													agttggcatgcaccctttccCctttgtaccagttgtagcca							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	42191009	AA	AA	42191008	3	1	105	1	0	0	0	0	1	0	0	0	3227	623	22	2	600	2	CEACAM7	19	42191008	Missense_Mutation	DNP	CC	TCGA-44-2655-01A-01D-1553-08	4310113	42191008	16937975	380	102634											
CEACAM5	1048	broad.mit.edu	37	chr19	42225165	42225165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggttctcaccaaagagcCaagaagacattttctttccc	6	12	3	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42225165	A	A	42225165	1	1	105	0	1	0	0	0	0	0	0	0	3225	609	21	2		2	CEACAM5	19	42225165	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	34157	42225165	16903818	381	102635											
ZNF766	90321	broad.mit.edu	37	chr19	52794388	52794388	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtgtgtggtaaggtcttTaggcacagttcatggtttgt	13	5	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52794388	C	C	52794388	2	2	105	1	0	0	0	0	0	0	0	1	18269	1751	61	5		5	ZNF766	19	52794388	Silent	SNP	T	TCGA-44-2655-01A-01D-1553-08	10569223	52794388	6334595	382	102636											
LAIR2	3904	broad.mit.edu	37	chr19	55014926	55014926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttccagtgctctgcctGgcccagaccatccacacgca	7	18	2	1	rs151276812		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55014926	T	T	55014926	2	4	105	1	0	0	0	0	0	0	0	1	8675	1335	47	2		2	LAIR2	19	55014926	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	2220538	55014926	4114057	383	102637											
NLRP8	126205	broad.mit.edu	37	chr19	56467169	56467169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgcaaggtgtctttcgGtaataagaggaaactgctga	11	7	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56467169	T	T	56467169	3	4	105	1	0	0	0	0	1	0	0	0	10578	1261	44	3	1755	3	NLRP8	19	56467169	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1452243	56467169	2661814	384	102638											
ZNF835	90485	broad.mit.edu	37	chr19	57176423	57176423	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcgttcctgcatgctgtcCccagcagggtctcccttgca	10	16	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57176423	A	A	57176423	2	1	105	1	0	0	0	0	0	0	0	1	18315	610	22	2		2	ZNF835	19	57176423	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	709254	57176423	1952560	385	102639											
CPXM1	56265	broad.mit.edu	37	chr20	2779633	2779634	+	Intron	DNP	AG	GC	GC													aagaagacatgtgagcccacAgcaggccacaccaccaggat							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	2779634	GC	GC	2779633	1	3	105	0	1	0	0	0	0	0	0	0	3869	203	7	5		5	CPXM1	20	2779633	Intron	DNP	AG	TCGA-44-2655-01A-01D-1553-08		2779633	60245887	386	102640											
PLCB1	23236	broad.mit.edu	37	chr20	8862361	8862361	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggaagccatgaaaggaaaGatcagtgaagacagcaatca	11	7	2	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8862361	T	T	8862361	3	4	105	1	0	0	0	0	1	0	0	0	12122	933	33	3	3745	3	PLCB1	20	8862361	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	6082728	8862361	54163159	387	102641											
C20orf103	24141	broad.mit.edu	37	chr20	9496207	9496207	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaaaatgggacgacgtgtCtcatggcagagtttgcagcc	15	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9496207	A	A	9496207	3	1	105	1	0	0	0	0	1	0	0	0	2097	913	32	3	178	3	C20orf103	20	9496207	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	633846	9496207	53529313	388	102642											
PAK7	57144	broad.mit.edu	37	chr20	9561009	9561009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catagtcatccaggctgggtCcccattcactttcactgtac	7	14	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9561009	A	A	9561009	3	1	105	1	0	0	0	0	1	0	0	0	11499	855	30	3	1414	3	PAK7	20	9561009	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	64802	9561009	53464511	389	102643											
ANKRD5	63926	broad.mit.edu	37	chr20	10030593	10030593	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtattacatgattgagacctAcaagaatgtcactgatagca	8	7	1	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10030593	G	G	10030593	3	3	105	1	0	0	0	0	1	0	0	0	676	391	14	5	1394	5	ANKRD5	20	10030593	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	469584	10030593	52994927	390	102644											
PAX1	5075	broad.mit.edu	37	chr20	21695369	21695369	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcccccaggcccagccCtgcctctggccggacccacc	10	23	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21695369	A	A	21695369	2	1	105	1	0	0	0	0	0	0	0	1	11572	668	24	2		2	PAX1	20	21695369	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	11664776	21695369	41330151	391	102645											
BPIL3	128859	broad.mit.edu	37	chr20	31625603	31625603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattacaatgcagtccctgcCtagtttttctatcatgaaaa	5	10	2	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31625603	A	A	31625603	1	1	105	0	1	0	0	0	0	0	0	0	1502	696	24	2		2	BPIL3	20	31625603	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	9930234	31625603	31399917	392	102646											
RALY	22913	broad.mit.edu	37	chr20	32665071	32665071	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagggcctggccaggggCacgactgggactcgactgtg	19	10	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32665071	T	T	32665071	1	4	105	0	1	0	0	0	0	0	0	0	13127	725	25	4		4	RALY	20	32665071	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	1039468	32665071	30360449	393	102647											
EDEM2	55741	broad.mit.edu	37	chr20	33714148	33714148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtaccagtcatcgaagCgggtgtagttccggatggct	14	9	1	0	rs148170838	byFrequency;by1000genomes	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33714148	A	A	33714148	3	1	105	1	0	0	0	0	1	0	0	0	4952	768	27	3	877	3	EDEM2	20	33714148	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	1049077	33714148	29311372	394	102648											
PTPRT	11122	broad.mit.edu	37	chr20	40730953	40730953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtctgtggggcacaaagGtgaatagataggccctgctc	15	8	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40730953	T	T	40730953	1	4	105	0	1	0	0	0	0	0	0	0	12920	1276	44	3		3	PTPRT	20	40730953	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	7016805	40730953	22294567	395	102649											
PTPRT	11122	broad.mit.edu	37	chr20	40735577	40735577	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcactggaagagaggtatGgtctgtgttaaggatcttca	13	6	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40735577	A	A	40735577	1	1	105	0	1	0	0	0	0	0	0	0	12920	1363	47	4		4	PTPRT	20	40735577	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	4624	40735577	22289943	396	102650											
PCK1	5105	broad.mit.edu	37	chr20	56137217	56137217	+	Frame_Shift_Del	DEL	C	-	-													caaagagacacagtgcccatCcccaaaacaggcctcagcca							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56137217	-	-	56137217	7	5	105	1	0	1	0	1	0	0	0	0	11675	845	30	0	321	0	PCK1	20	56137217	Frame_Shift_Del	DEL	C	TCGA-44-2655-01A-01D-1553-08	15401640	56137217	6888303	397	102651											
PHACTR3	116154	broad.mit.edu	37	chr20	58342383	58342384	+	Missense_Mutation	DNP	CC	AA	AA													gagagatccgtgggccagctCcccagccccccactgctgcc							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	58342384	AA	AA	58342383	3	1	105	1	0	0	0	0	1	0	0	0	11906	842	30	3	702	3	PHACTR3	20	58342383	Missense_Mutation	DNP	CC	TCGA-44-2655-01A-01D-1553-08	2205166	58342383	4683137	398	102652											
TAF4	6874	broad.mit.edu	37	chr20	60575248	60575248	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagattctgtagcctttgttGcgtggcatgtgatacataac	10	7	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60575248	A	A	60575248	4	1	105	1	0	0	0	0	0	1	0	0	15645	1328	46	4	558	4	TAF4	20	60575248	Nonsense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	2232865	60575248	2450272	399	102653											
C20orf151	140893	broad.mit.edu	37	chr20	60990964	60990964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcaggggtgagggggggtCcgaggtgccctccttggccc	19	12	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60990964	T	T	60990964	3	4	105	1	0	0	0	0	1	0	0	0	2113	855	30	4	1602	4	C20orf151	20	60990964	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	415716	60990964	2034556	400	102654											
TPTE	7179	broad.mit.edu	37	chr21	10909785	10909785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgccttctctgtttcaccCaactgagtcacccaaaccta	5	16	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10909785	A	A	10909785	1	1	105	0	1	0	0	0	0	0	0	0	16554	609	21	2		2	TPTE	21	10909785	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08		10909785	37220110	401	102655											
TPTE	7179	broad.mit.edu	37	chr21	10944861	10944861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatatttaaagaccacaaaCtattgactcatccccattaa	3	10	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10944861	A	A	10944861	1	1	105	0	1	0	0	0	0	0	0	0	16554	580	20	3		3	TPTE	21	10944861	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	35076	10944861	37185034	402	102656											
TPTE	7179	broad.mit.edu	37	chr21	11014888	11014888	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttttttttttttttttgCtacatttcaaagagaaaagc	4	6	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11014888	T	T	11014888	1	4	105	0	1	0	0	0	0	0	0	0	16554	812	28	4		4	TPTE	21	11014888	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	70027	11014888	37115007	403	102657											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127722	32127722	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaggagagaattgagatGggtttcaagaagatgcttct	13	4	2	5			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32127722	T	T	32127722	1	4	105	0	1	0	0	0	0	0	0	0	8609	1363	47	2		2	KRTAP21-1	21	32127722	5'Flank	SNP	G	TCGA-44-2655-01A-01D-1553-08	21112834	32127722	16002173	404	102658											
C21orf29	54084	broad.mit.edu	37	chr21	45947472	45947472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagcaatcctcgcgggagCgcgattcccaagccccaagt	11	15	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45947472	A	A	45947472	1	1	105	0	1	0	0	0	0	0	0	0	2146	783	27	3		3	C21orf29	21	45947472	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	13819750	45947472	2182423	405	102659											
TXNRD2	10587	broad.mit.edu	37	chr22	19864788	19864788	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgggggaggcaggcggGgtcagcacagggaggggggt	26	5	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19864788	A	A	19864788	1	1	105	0	1	0	0	0	0	0	0	0	16934	1247	43	4		4	TXNRD2	22	19864788	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08		19864788	31439778	406	102660											
PI4KA	5297	broad.mit.edu	37	chr22	21084157	21084158	+	Intron	DNP	CC	AA	AA													atagcttgcatgtgatggccCcagcagcacacctcccaccg							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21084158	AA	AA	21084157	1	1	105	0	1	0	0	0	0	0	0	0	11968	638	22	2		2	PI4KA	22	21084157	Intron	DNP	CC	TCGA-44-2655-01A-01D-1553-08	1219369	21084157	30220409	407	102661											
BCR	613	broad.mit.edu	37	chr22	23631620	23631620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgtgccccttccccaggGtgtgtggtggaggtccagtg	16	12	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23631620	T	T	23631620	1	4	105	0	1	0	0	0	0	0	0	0	1393	1276	44	3		3	BCR	22	23631620	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2547463	23631620	27672946	408	102662											
SEZ6L	23544	broad.mit.edu	37	chr22	26690378	26690378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagtctacactggctatgGggtggagctccaggtaaccc	13	11	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26690378	T	T	26690378	3	4	105	1	0	0	0	0	1	0	0	0	14256	1232	43	2	966	2	SEZ6L	22	26690378	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	3058758	26690378	24614188	409	102663											
SEZ6L	23544	broad.mit.edu	37	chr22	26769422	26769422	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatttctctttcagttaatCaagacagttttgaacatgct	6	7	3	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26769422	T	T	26769422	4	4	105	1	0	0	0	0	0	1	0	0	14256	827	29	4	2854	4	SEZ6L	22	26769422	Nonsense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	79044	26769422	24535144	410	102664											
EFCAB6	64800	broad.mit.edu	37	chr22	44028081	44028081	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttgaaggagttggaggCtgcggcggagtggtttccgg	18	6	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44028081	T	T	44028081	2	4	105	1	0	0	0	0	0	0	0	1	4979	796	28	4		4	EFCAB6	22	44028081	Silent	SNP	C	TCGA-44-2655-01A-01D-1553-08	17258659	44028081	7276485	411	102665											
WNT7B	7477	broad.mit.edu	37	chr22	46319087	46319087	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctccacctgcacggccgcGttgtacttctccttcagcag	8	17	2	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46319087	C	C	46319087	3	2	105	1	0	0	0	0	1	0	0	0	17522	1136	40	4	354	4	WNT7B	22	46319087	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	2291006	46319087	4985479	412	102666											
ARSH	347527	broad.mit.edu	37	chrX	2936569	2936569	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattttggtaactttctaccCcttaggtacaaaagggaacc	7	9	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2936569	T	T	2936569	1	4	105	0	1	0	0	0	0	0	0	0	997	638	22	4		4	ARSH	23	2936569	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08		2936569	152333991	413	102667											
POLA1	5422	broad.mit.edu	37	chrX	24722656	24722656	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctaaaattagagatgacttGatactctgatagtttacctt	6	6	2	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24722656	T	T	24722656	1	4	105	0	1	0	0	0	0	0	0	0	12282	1305	45	3		3	POLA1	23	24722656	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	21786087	24722656	130547904	414	102668											
DMD	1756	broad.mit.edu	37	chrX	32717136	32717136	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatatatacacgtgtatataCatataagttatatatatatg	4	3	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32717136	T	T	32717136	1	4	105	0	1	0	0	0	0	0	0	0	4620	493	17	4		4	DMD	23	32717136	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	7994480	32717136	122553424	415	102669											
CXorf59	286464	broad.mit.edu	37	chrX	36089896	36089896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataatggtataaagaaataCgtgaatgcatgttttgctta	8	3	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36089896	A	A	36089896	1	1	105	0	1	0	0	0	0	0	0	0	4148	551	19	3		3	CXorf59	23	36089896	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	3372760	36089896	119180664	416	102670											
BCOR	54880	broad.mit.edu	37	chrX	39932097	39932097	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggcttggggggctcagcGctctggccaacactctctgc	15	13	3	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39932097	A	A	39932097	2	1	105	1	0	0	0	0	0	0	0	1	1391	1078	38	4		4	BCOR	23	39932097	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	3842201	39932097	115338463	417	102671											
PHF16	9767	broad.mit.edu	37	chrX	46918161	46918161	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttagtaggtcctttaaagaGaccaccaataggtgggtgaa	11	6	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46918161	T	T	46918161	3	4	105	1	0	0	0	0	1	0	0	0	11922	933	33	3	2192	3	PHF16	23	46918161	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	6986064	46918161	108352399	418	102672											
USP11	8237	broad.mit.edu	37	chrX	47099947	47099947	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaggtacccataatgtcctCcattaatacctttccttctt	3	13	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47099947	A	A	47099947	1	1	105	0	1	0	0	0	0	0	0	0	17168	870	30	3		3	USP11	23	47099947	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	181786	47099947	108170613	419	102673											
FOXP3	50943	broad.mit.edu	37	chrX	49108150	49108150	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtggcaggatggtttctgAagaaggcaaacatgcgtgtg	16	5	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49108150	T	T	49108150	3	4	105	1	0	0	0	0	1	0	0	0	6088	246	9	5	182	5	FOXP3	23	49108150	Missense_Mutation	SNP	A	TCGA-44-2655-01A-01D-1553-08	2008203	49108150	106162410	420	102674											
HUWE1	10075	broad.mit.edu	37	chrX	53562502	53562502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcatacatatcagacttcAtctaggatgggattagatac	7	7	4	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53562502	T	T	53562502	1	4	105	0	1	0	0	0	0	0	0	0	7531	232	8	5		5	HUWE1	23	53562502	Intron	SNP	A	TCGA-44-2655-01A-01D-1553-08	4454352	53562502	101708058	421	102675											
FAAH2	158584	broad.mit.edu	37	chrX	57319095	57319095	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccaccttagcatatttcCtagattcttctttctctttg	4	11	3	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57319095	A	A	57319095	1	1	105	0	1	0	0	0	0	0	0	0	5400	696	24	2		2	FAAH2	23	57319095	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	3756593	57319095	97951465	422	102676											
ARHGEF9	23229	broad.mit.edu	37	chrX	62926160	62926160	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatatccttgaggtgcTtgatgtagtgacgctcagtg	11	8	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62926160	A	A	62926160	3	1	105	1	0	0	0	0	1	0	0	0	914	1609	56	5	1223	5	ARHGEF9	23	62926160	Missense_Mutation	SNP	T	TCGA-44-2655-01A-01D-1553-08	5607065	62926160	92344400	423	102677											
ARHGEF9	23229	broad.mit.edu	37	chrX	62926368	62926368	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaaataatgagttagcttCcttctttgggaggtttccag	10	6	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62926368	A	A	62926368	1	1	105	0	1	0	0	0	0	0	0	0	914	870	30	3		3	ARHGEF9	23	62926368	Intron	SNP	C	TCGA-44-2655-01A-01D-1553-08	208	62926368	92344192	424	102678											
HEPH	9843	broad.mit.edu	37	chrX	65483612	65483612	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtacctttagggtatgGgacttatgtgactgagagtt	13	4	0	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65483612	C	C	65483612	1	2	105	0	1	0	0	0	0	0	0	0	7121	1247	43	4		4	HEPH	23	65483612	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2557244	65483612	89786948	425	102679											
PHKA1	5255	broad.mit.edu	37	chrX	71813132	71813132	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggttccaggtgacttggaaGaggagaggaaagaacataaa	14	4	0	4			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71813132	A	A	71813132	1	1	105	0	1	0	0	0	0	0	0	0	11938	957	33	4		4	PHKA1	23	71813132	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	6329520	71813132	83457428	426	102680											
ZDHHC15	158866	broad.mit.edu	37	chrX	74598833	74598833	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcttatgcatgcattacaaGagtgaagaatttaaaatctt	7	5	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74598833	C	C	74598833	1	2	105	0	1	0	0	0	0	0	0	0	17731	957	33	4		4	ZDHHC15	23	74598833	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	2785701	74598833	80671727	427	102681											
MAGEE1	57692	broad.mit.edu	37	chrX	75650121	75650121	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaatggcaaccaagccaagGaggctgagatttgggaaatg	14	6	0	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75650121	T	T	75650121	4	4	105	1	0	0	0	0	0	1	0	0	9277	1175	41	3	1800	3	MAGEE1	23	75650121	Nonsense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	1051288	75650121	79620439	428	102682											
ATP7A	538	broad.mit.edu	37	chrX	77268335	77268335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatatatatgtgaatttcaGcattttttaaaattcaatga	5	3	2	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77268335	T	T	77268335	1	4	105	0	1	0	0	0	0	0	0	0	1194	986	34	3		3	ATP7A	23	77268335	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	1618214	77268335	78002225	429	102683											
BRWD3	254065	broad.mit.edu	37	chrX	79978240	79978240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacatagttattggcatcaCgaataagaggacgataatcc	8	7	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79978240	A	A	79978240	3	1	105	1	0	0	0	0	1	0	0	0	1535	536	19	3	3811	3	BRWD3	23	79978240	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	2709905	79978240	75292320	430	102684											
SATL1	340562	broad.mit.edu	37	chrX	84362715	84362715	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggactggttggctcagGcctgtttgccatgtgcctgg	15	11	1	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84362715	T	T	84362715	2	4	105	1	0	0	0	0	0	0	0	1	13967	1190	42	3		3	SATL1	23	84362715	Silent	SNP	G	TCGA-44-2655-01A-01D-1553-08	4384475	84362715	70907845	431	102685											
POF1B	79983	broad.mit.edu	37	chrX	84606415	84606415	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcataaataacattgtttcCtgggaagaaatggcttcctc	7	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84606415	T	T	84606415	3	4	105	1	0	0	0	0	1	0	0	0	12277	690	24	4	1340	4	POF1B	23	84606415	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	243700	84606415	70664145	432	102686											
PCDH11X	27328	broad.mit.edu	37	chrX	91132563	91132563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattactggctgcagatgctGgcaaacctcctttgaatcag	9	10	1	2			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91132563	T	T	91132563	3	4	105	1	0	0	0	0	1	0	0	0	11602	1348	47	2	1330	2	PCDH11X	23	91132563	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	6526148	91132563	64137997	433	102687											
NOX1	27035	broad.mit.edu	37	chrX	100125757	100125760	+	Frame_Shift_Del	DEL	AGGA	-	-													tgtcggccttctcatatttcAggaaggcatccacaaacagg							TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100125760	-	-	100125757	7	5	105	1	0	1	0	1	0	0	0	0	10651	188	7	0	1650	0	NOX1	23	100125757	Frame_Shift_Del	DEL	AGGA	TCGA-44-2655-01A-01D-1553-08	8993194	100125757	55144803	434	102688											
HTR2C	3358	broad.mit.edu	37	chrX	114141816	114141816	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagagttgccgccactgcTttgtctgggagggagcttaa	13	10	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114141816	A	A	114141816	2	1	105	1	0	0	0	0	0	0	0	1	7513	1596	56	5		5	HTR2C	23	114141816	Silent	SNP	T	TCGA-44-2655-01A-01D-1553-08	14016059	114141816	41128744	435	102689											
KIAA1210	57481	broad.mit.edu	37	chrX	118220652	118220652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctgattttatgtcccCtgcctacagaggatgaaatt	8	9	1	3			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118220652	A	A	118220652	3	1	105	1	0	0	0	0	1	0	0	0	8284	681	24	2	604	2	KIAA1210	23	118220652	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	4078836	118220652	37049908	436	102690											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298619	125298619	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtagcagtgggtgtagagcGcattggggaactctcccatg	15	8	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125298619	C	C	125298619	3	2	105	1	0	0	0	0	1	0	0	0	4298	1087	38	4	106	4	DCAF12L2	23	125298619	Missense_Mutation	SNP	G	TCGA-44-2655-01A-01D-1553-08	7077967	125298619	29971941	437	102691											
SAGE1	55511	broad.mit.edu	37	chrX	134988395	134988395	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtgccatgaagggagttaGgtggttttgttgtgttatcg	15	3	0	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134988395	C	C	134988395	1	2	105	0	1	0	0	0	0	0	0	0	13920	1015	35	4		4	SAGE1	23	134988395	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	9689776	134988395	20282165	438	102692											
ZIC3	7547	broad.mit.edu	37	chrX	136649500	136649500	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcggccggcgctcagtttcCtaactacagccccatgaaca	9	16	1	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136649500	G	G	136649500	3	3	105	1	0	0	0	0	1	0	0	0	17806	681	24	4	652	4	ZIC3	23	136649500	Missense_Mutation	SNP	C	TCGA-44-2655-01A-01D-1553-08	1661105	136649500	18621060	439	102693											
SPANXN2	494119	broad.mit.edu	37	chrX	142803635	142803635	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgagccgtcccttctctGtgtgtctttctttcaccctc	7	14	4	1			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142803635	A	A	142803635	1	1	105	0	1	0	0	0	0	0	0	0	15107	1392	48	4		4	SPANXN2	23	142803635	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	6154135	142803635	12466925	440	102694											
PLXNB3	5365	broad.mit.edu	37	chrX	153040091	153040091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggcgccctggcaggcgGctggcctggccccggccctg	17	17	0	0			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153040091	T	T	153040091	1	4	105	0	1	0	0	0	0	0	0	0	12220	1218	42	3		3	PLXNB3	23	153040091	Intron	SNP	G	TCGA-44-2655-01A-01D-1553-08	10236456	153040091	2230469	441	102695											
MMEL1	79258	broad.mit.edu	37	chr1	2537711	2537711	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgatgtgccggctggagttCtggtcgtcgttccagatgaa	14	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2537711	T	T	2537711	2	4	106	1	0	0	0	0	0	0	0	1	9739	912	32	4		4	MMEL1	1	2537711	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08		2537711	246712910	1	102696											
PRDM16	63976	broad.mit.edu	37	chr1	3328631	3328631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaccacggggacgggctcgGacctggacagcgacgtggac	17	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3328631	T	T	3328631	3	4	106	1	0	0	0	0	1	0	0	0	12563	1174	41	3	1904	3	PRDM16	1	3328631	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	790920	3328631	245921990	2	102697											
ARHGEF16	27237	broad.mit.edu	37	chr1	3396278	3396279	+	Intron	INS	-	GCCCCG	GCCCCG													tggcagtcgggggatggggtINSgccccggccccgggggatgt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GCCCCG	3396279	GCCCCG	GCCCCG	3396278	6	5	106	0	1	1	1	0	0	0	0	0	901	1711	59	0		0	ARHGEF16	1	3396278	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	67647	3396278	245854343	3	102698											
CHD5	26038	broad.mit.edu	37	chr1	6173020	6173020	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggatcaagctcagctccaGcttgtccaggatcttctcct	9	13	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6173020	A	A	6173020	2	1	106	1	0	0	0	0	0	0	0	1	3359	962	34	4		4	CHD5	1	6173020	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	2776742	6173020	243077601	4	102699											
HES2	54626	broad.mit.edu	37	chr1	6479306	6479306	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagggctcactcacggggcGctgccgtgggccatgaggac	18	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6479306	A	A	6479306	3	1	106	1	0	0	0	0	1	0	0	0	7133	1087	38	4	293	4	HES2	1	6479306	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	306286	6479306	242771315	5	102700											
TAS1R1	80835	broad.mit.edu	37	chr1	6639557	6639557	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttctgcctaagtgctaCgtgatcctctgccgcccaga	8	13	2	2	rs145637880	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6639557	A	A	6639557	4	1	106	1	0	0	0	0	0	1	0	0	15681	547	19	3	2461	3	TAS1R1	1	6639557	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	160251	6639557	242611064	6	102701											
PER3	8863	broad.mit.edu	37	chr1	7870084	7870084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacgaaggcggagcaggtGcatgggcttatgtcacattc	15	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7870084	T	T	7870084	1	4	106	0	1	0	0	0	0	0	0	0	11825	1334	46	3		3	PER3	1	7870084	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1230527	7870084	241380537	7	102702											
SLC45A1	50651	broad.mit.edu	37	chr1	8385341	8385341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaccctggcaatgaccgctGgcctgctctgtttcaggatt	12	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8385341	A	A	8385341	1	1	106	0	1	0	0	0	0	0	0	0	14754	1363	47	4		4	SLC45A1	1	8385341	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	515257	8385341	240865280	8	102703											
MTOR	2475	broad.mit.edu	37	chr1	11193404	11193404	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctagcaaaattttcagcCacacgcaagaaaggagatgg	11	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11193404	T	T	11193404	1	4	106	0	1	0	0	0	0	0	0	0	10048	609	21	4		4	MTOR	1	11193404	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2808063	11193404	238057217	9	102704											
PTCHD2	57540	broad.mit.edu	37	chr1	11574545	11574545	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccttcatcagcagcagctGcattgctgccctggtctaca	10	14	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11574545	A	A	11574545	3	1	106	1	0	0	0	0	1	0	0	0	12839	1319	46	4	1425	4	PTCHD2	1	11574545	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	381141	11574545	237676076	10	102705											
PTCHD2	57540	broad.mit.edu	37	chr1	11594437	11594437	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctcacatctctccccacaGaccacgtacaagggcaaatc	6	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11594437	T	T	11594437	5	4	106	1	0	0	0	0	0	0	1	0	12839	956	33	3	3441	3	PTCHD2	1	11594437	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	19892	11594437	237656184	11	102706											
TNFRSF8	943	broad.mit.edu	37	chr1	12157231	12157231	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagcctgactactacctGgatgaggccgaccgctgtac	12	12	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12157231	T	T	12157231	2	4	106	1	0	0	0	0	0	0	0	1	16422	1335	47	2		2	TNFRSF8	1	12157231	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	562794	12157231	237093390	12	102707											
PRAMEF18	391003	broad.mit.edu	37	chr1	13474988	13474988	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgccgtgaaagcagaaagTggtgaggttggagcagcggc	17	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13474988	C	C	13474988	3	2	106	1	0	0	0	0	1	0	0	0	12535	1696	59	5	302	5	PRAMEF18	1	13474988	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	1317757	13474988	235775633	13	102708											
CELA2A	63036	broad.mit.edu	37	chr1	15789159	15789159	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagccagttacttgggTctatccccagcattatccaa	8	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15789159	A	A	15789159	1	1	106	0	1	0	0	0	0	0	0	0	3241	1682	58	5		5	CELA2A	1	15789159	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2314171	15789159	233461462	14	102709											
FBLIM1	54751	broad.mit.edu	37	chr1	16096939	16096939	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccacaagaccgtgtcccccCgagagctggctgtggaggcc	14	15	0	2	rs140794901		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16096939	T	T	16096939	4	4	106	1	0	0	0	0	0	1	0	0	5754	644	23	4	591	4	FBLIM1	1	16096939	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	307780	16096939	233153682	15	102710											
ATP13A2	23400	broad.mit.edu	37	chr1	17313590	17313590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctagctgcacgccggtcaCcaggaccatctgcagcagca	10	17	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17313590	A	A	17313590	3	1	106	1	0	0	0	0	1	0	0	0	1128	507	18	3	760	3	ATP13A2	1	17313590	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1216651	17313590	231937031	16	102711											
PADI3	51702	broad.mit.edu	37	chr1	17596639	17596639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggacttggaatttttgGtgaggctgcagacctcttcc	13	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17596639	T	T	17596639	1	4	106	0	1	0	0	0	0	0	0	0	11473	1276	44	3		3	PADI3	1	17596639	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	283049	17596639	231653982	17	102712											
RCC2	55920	broad.mit.edu	37	chr1	17765004	17765004	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccgccgccgccttcttccTgggcatggtcgcggctggag	15	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17765004	A	A	17765004	3	1	106	1	0	0	0	0	1	0	0	0	13282	1579	55	5	1609	5	RCC2	1	17765004	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	168365	17765004	231485617	18	102713											
PLA2G5	5322	broad.mit.edu	37	chr1	20416397	20416397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtcacctgcggtaaggctGgggcttcccgttcgggccat	15	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20416397	A	A	20416397	1	1	106	0	1	0	0	0	0	0	0	0	12102	1363	47	4		4	PLA2G5	1	20416397	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2651393	20416397	228834224	19	102714											
HP1BP3	50809	broad.mit.edu	37	chr1	21074085	21074086	+	Missense_Mutation	DNP	CC	AA	AA													aggtgccactgaaccctttcCcagagatctgttccatccac							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21074086	AA	AA	21074085	3	1	106	1	0	0	0	0	1	0	0	0	7395	623	22	2	468	2	HP1BP3	1	21074085	Missense_Mutation	DNP	CC	TCGA-44-2656-01A-02D-0969-08	657688	21074085	228176536	20	102715											
ECE1	1889	broad.mit.edu	37	chr1	21548182	21548182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttcggctctctgggctcTtgaaacatcaagatggcaga	10	11	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21548182	C	C	21548182	1	2	106	0	1	0	0	0	0	0	0	0	4929	1624	56	5		5	ECE1	1	21548182	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	474097	21548182	227702439	21	102716											
ZBTB40	9923	broad.mit.edu	37	chr1	22817990	22817990	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggatgttttaaaaaaactAgaaatgtgttcagaaattaa	7	3	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22817990	G	G	22817990	2	3	106	1	0	0	0	0	0	0	0	1	17668	407	15	5		5	ZBTB40	1	22817990	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	1269808	22817990	226432631	22	102717											
EPHA8	2046	broad.mit.edu	37	chr1	22928016	22928016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgtgggggcagggggggGgacccctgccggggaggcta	24	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22928016	T	T	22928016	1	4	106	0	1	0	0	0	0	0	0	0	5215	1247	43	2		2	EPHA8	1	22928016	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	110026	22928016	226322605	23	102718											
C1QB	713	broad.mit.edu	37	chr1	22986096	22986096	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctgggacacctggcccCgatggccaacctgggacccc	11	18	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22986096	A	A	22986096	2	1	106	1	0	0	0	0	0	0	0	1	1975	639	23	1		1	C1QB	1	22986096	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	58080	22986096	226264525	24	102719											
MYOM3	127294	broad.mit.edu	37	chr1	24388533	24388533	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtctttggggtccaggatGtgaagccagatctcatccag	13	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24388533	A	A	24388533	2	1	106	1	0	0	0	0	0	0	0	1	10187	1368	48	4		4	MYOM3	1	24388533	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1402437	24388533	224862088	25	102720											
MYOM3	127294	broad.mit.edu	37	chr1	24421441	24421441	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgagcaaagactggcttcAgcaccgaggtgaattccacg	11	12	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24421441	T	T	24421441	3	4	106	1	0	0	0	0	1	0	0	0	10187	188	7	5	3599	5	MYOM3	1	24421441	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	32908	24421441	224829180	26	102721											
NIPAL3	57185	broad.mit.edu	37	chr1	24785406	24785406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcaagcctcacagatgtacGactcctctttgattgccagt	8	12	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24785406	T	T	24785406	3	4	106	1	0	0	0	0	1	0	0	0	10521	1058	37	3	832	3	NIPAL3	1	24785406	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	363965	24785406	224465215	27	102722											
CATSPER4	378807	broad.mit.edu	37	chr1	26524383	26524383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctctctgggcagctggtGggggtaatgaggagggaagg	20	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26524383	T	T	26524383	1	4	106	0	1	0	0	0	0	0	0	0	2716	1363	47	2		2	CATSPER4	1	26524383	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1738977	26524383	222726238	28	102723											
ZNF683	257101	broad.mit.edu	37	chr1	26688465	26688465	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgggccccggagtgcaggcGcaggtgggtcttgaggttac	18	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26688465	C	C	26688465	3	2	106	1	0	0	0	0	1	0	0	0	18217	1087	38	4	326	4	ZNF683	1	26688465	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	164082	26688465	222562156	29	102724											
ARID1A	8289	broad.mit.edu	37	chr1	27059288	27059288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctccagcttgcctgtgaGtatttctgcaccttctgaaa	7	13	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27059288	T	T	27059288	1	4	106	0	1	0	0	0	0	0	0	0	915	1044	36	3		3	ARID1A	1	27059288	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	370823	27059288	222191333	30	102725											
WDTC1	23038	broad.mit.edu	37	chr1	27630328	27630328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcagcccagttggcagcGggaggttgagtggggagtgt	21	6	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27630328	T	T	27630328	1	4	106	0	1	0	0	0	0	0	0	0	17469	1131	39	1		1	WDTC1	1	27630328	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	571040	27630328	221620293	31	102726											
PTAFR	5724	broad.mit.edu	37	chr1	28476668	28476668	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaacagtagataacagggtCtaagacacagttggtgctaa	11	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28476668	A	A	28476668	3	1	106	1	0	0	0	0	1	0	0	0	12829	913	32	3	167	3	PTAFR	1	28476668	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	846340	28476668	220773953	32	102727											
DNAJC8	22826	broad.mit.edu	37	chr1	28528037	28528037	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccaggcacagtggctcaTacctataatcccagcacttc	8	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28528037	C	C	28528037	1	2	106	0	1	0	0	0	0	0	0	0	4695	1421	49	5		5	DNAJC8	1	28528037	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	51369	28528037	220722584	33	102728											
GMEB1	10691	broad.mit.edu	37	chr1	29041146	29041146	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgagattgatccagcccCggacccagaagctgaagata	10	11	0	5	rs148243859		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29041146	T	T	29041146	3	4	106	1	0	0	0	0	1	0	0	0	6551	652	23	4	1617	4	GMEB1	1	29041146	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	513109	29041146	220209475	34	102729											
COL16A1	1307	broad.mit.edu	37	chr1	32149650	32149650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccccacaggagaaagggGgacaggagggagaggaggca	19	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32149650	T	T	32149650	1	4	106	0	1	0	0	0	0	0	0	0	3705	1247	43	2		2	COL16A1	1	32149650	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3108504	32149650	217100971	35	102730											
CSMD2	114784	broad.mit.edu	37	chr1	34006151	34006151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaggcagctctccggtcCaggacccatttccctcacag	9	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34006151	A	A	34006151	3	1	106	1	0	0	0	0	1	0	0	0	3979	595	21	2	1334	2	CSMD2	1	34006151	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1856501	34006151	215244470	36	102731											
CSMD2	114784	broad.mit.edu	37	chr1	34190861	34190861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatggggatggggccaagCaggggcctgtggtggagcac	19	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34190861	A	A	34190861	1	1	106	0	1	0	0	0	0	0	0	0	3979	725	25	3		3	CSMD2	1	34190861	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	184710	34190861	215059760	37	102732											
CSMD2	114784	broad.mit.edu	37	chr1	34209016	34209016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggacgggcgcctcggCggtggccccatccttgatga	15	15	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34209016	A	A	34209016	3	1	106	1	0	0	0	0	1	0	0	0	3979	768	27	3	8769	3	CSMD2	1	34209016	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	18155	34209016	215041605	38	102733											
CSMD2	114784	broad.mit.edu	37	chr1	34238409	34238409	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgactttatacctcttttgGagctgaaggtccacatgaca	9	9	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34238409	T	T	34238409	1	4	106	0	1	0	0	0	0	0	0	0	3979	1189	41	3		3	CSMD2	1	34238409	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	29393	34238409	215012212	39	102734											
ZMYM1	79830	broad.mit.edu	37	chr1	35577246	35577246	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaagccctaataaaaattActtcagtacctaccaattcc	2	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35577246	T	T	35577246	1	4	106	0	1	0	0	0	0	0	0	0	17825	406	14	5		5	ZMYM1	1	35577246	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1338837	35577246	213673375	40	102735											
ZMYM4	9202	broad.mit.edu	37	chr1	35847281	35847281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttactgttacagtgggtcGggacaatgccacatgcttca	12	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35847281	T	T	35847281	2	4	106	1	0	0	0	0	0	0	0	1	17828	1103	39	1		1	ZMYM4	1	35847281	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	270035	35847281	213403340	41	102736											
EIF2C3	192669	broad.mit.edu	37	chr1	36437711	36437711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtctctcgggtgagttgGcacctactgcatgaagtact	11	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36437711	T	T	36437711	3	4	106	1	0	0	0	0	1	0	0	0	5047	1212	42	3	413	3	EIF2C3	1	36437711	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	590430	36437711	212812910	42	102737											
GRIK3	2899	broad.mit.edu	37	chr1	37338048	37338048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccacttggacttgtgtGcacacacatgcccatggcca	9	14	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37338048	T	T	37338048	1	4	106	0	1	0	0	0	0	0	0	0	6841	1334	46	3		3	GRIK3	1	37338048	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	900337	37338048	211912573	43	102738											
SNIP1	79753	broad.mit.edu	37	chr1	38005774	38005774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccgatattgaaagaccgCatgctgctttgaacaagacg	9	9	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38005774	A	A	38005774	3	1	106	1	0	0	0	0	1	0	0	0	14962	710	25	3	288	3	SNIP1	1	38005774	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	667726	38005774	211244847	44	102739											
EPHA10	284656	broad.mit.edu	37	chr1	38201007	38201007	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggctcccgccacgacagGgacacgctctggggttccac	13	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38201007	A	A	38201007	2	1	106	1	0	0	0	0	0	0	0	1	5208	1219	43	4		4	EPHA10	1	38201007	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	195233	38201007	211049614	45	102740											
MACF1	23499	broad.mit.edu	37	chr1	39945451	39945451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaactgacattgtgtgtGtgtttatttcctttttagca	9	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39945451	T	T	39945451	1	4	106	0	1	0	0	0	0	0	0	0	9232	1392	48	3		3	MACF1	1	39945451	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1744444	39945451	209305170	46	102741											
PPIH	10465	broad.mit.edu	37	chr1	43126519	43126519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcttctcagtattctttGctctctgtttcagggtcata	6	9	6	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43126519	T	T	43126519	1	4	106	0	1	0	0	0	0	0	0	0	12426	1334	46	3		3	PPIH	1	43126519	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3181068	43126519	206124102	47	102742											
FAM183A	440585	broad.mit.edu	37	chr1	43613767	43613767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcaagagtgagaggcacGgcggggtgggggaagggcga	22	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43613767	T	T	43613767	1	4	106	0	1	0	0	0	0	0	0	0	5556	1131	39	1		1	FAM183A	1	43613767	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	487248	43613767	205636854	48	102743											
WDR65	149465	broad.mit.edu	37	chr1	43638557	43638557	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtgaagtacaatgtggatCagaaatggcaaaaattcatt	10	4	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43638557	A	A	43638557	3	1	106	1	0	0	0	0	1	0	0	0	17443	827	29	3	135	3	WDR65	1	43638557	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	24790	43638557	205612064	49	102744											
KIAA0467	23334	broad.mit.edu	37	chr1	43889029	43889029	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcgtggcttagcagggtatGagtggtacagaggtgtggag	20	4	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43889029	T	T	43889029	1	4	106	0	1	0	0	0	0	0	0	0	8248	1305	45	3		3	KIAA0467	1	43889029	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	250472	43889029	205361592	50	102745											
KIAA0467	23334	broad.mit.edu	37	chr1	43891436	43891436	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggactgttgaagcttcctGaagagctggaacccagggta	14	8	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43891436	A	A	43891436	1	1	106	0	1	0	0	0	0	0	0	0	8248	1305	45	4		4	KIAA0467	1	43891436	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2407	43891436	205359185	51	102746											
KIAA0467	23334	broad.mit.edu	37	chr1	43909130	43909130	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggcccccagagacctcTggaccccctgacgggcaggt	13	16	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43909130	C	C	43909130	2	2	106	1	0	0	0	0	0	0	0	1	8248	1567	55	5		5	KIAA0467	1	43909130	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	17694	43909130	205341491	52	102747											
PTPRF	5792	broad.mit.edu	37	chr1	44084819	44084819	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccatcctggccttcctacGacgggtcaaggcctgcaacc	9	17	1	0	rs70937045		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44084819	A	A	44084819	3	1	106	1	0	0	0	0	1	0	0	0	12909	1058	37	4	4690	4	PTPRF	1	44084819	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	175689	44084819	205165802	53	102748											
SLC6A9	6536	broad.mit.edu	37	chr1	44489925	44489926	+	Translation_Start_Site	INS	-	C	C													gcctctgtactcaccagcatINSccctttggcaccttttccta							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44489926	C	C	44489925	6	5	106	1	0	1	1	0	0	0	0	0	14805	1435	50	0		0	SLC6A9	1	44489925	Translation_Start_Site	INS	-	TCGA-44-2656-01A-02D-0969-08	405106	44489925	204760696	54	102749											
DMAP1	55929	broad.mit.edu	37	chr1	44680136	44680136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtattggagtcccaagtcCcccaggttttggcccctgat	10	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44680136	A	A	44680136	1	1	106	0	1	0	0	0	0	0	0	0	4616	638	22	2		2	DMAP1	1	44680136	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	190211	44680136	204570485	55	102750											
ERI3	79033	broad.mit.edu	37	chr1	44820666	44820666	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccagggccgcccccgCcccccgtcagcagcgggaga	12	21	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44820666	T	T	44820666	2	4	106	1	0	0	0	0	0	0	0	1	5271	726	26	4		4	ERI3	1	44820666	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	140530	44820666	204429955	56	102751											
TAL1	6886	broad.mit.edu	37	chr1	47685902	47685902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagattccttccccaaaGgcatctccatacattgggaa	7	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47685902	T	T	47685902	1	4	106	0	1	0	0	0	0	0	0	0	15660	1015	35	2		2	TAL1	1	47685902	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2865236	47685902	201564719	57	102752											
TXNDC12	51060	broad.mit.edu	37	chr1	52486661	52486661	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcacccgtcagcctttcctGagcttccttcatcccctgaa	5	17	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52486661	A	A	52486661	4	1	106	1	0	0	0	0	0	1	0	0	16919	1299	45	4	59	4	TXNDC12	1	52486661	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	4800759	52486661	196763960	58	102753											
DMRTB1	63948	broad.mit.edu	37	chr1	53927080	53927080	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctgatgaccccgccgcccTgggccgccctgcggatgctt	13	18	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53927080	C	C	53927080	1	2	106	0	1	0	0	0	0	0	0	0	4630	1595	55	5		5	DMRTB1	1	53927080	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1440419	53927080	195323541	59	102754											
ACOT11	26027	broad.mit.edu	37	chr1	55059537	55059537	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgggctgggacttgctgtCtggtggagctgcggggcttc	18	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55059537	T	T	55059537	1	4	106	0	1	0	0	0	0	0	0	0	149	928	32	4		4	ACOT11	1	55059537	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1132457	55059537	194191084	60	102755											
PCSK9	255738	broad.mit.edu	37	chr1	55512125	55512125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtttgatcaggtaaggcCaggctgtggctgtgtttgct	15	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55512125	A	A	55512125	1	1	106	0	1	0	0	0	0	0	0	0	11700	609	21	2		2	PCSK9	1	55512125	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	452588	55512125	193738496	61	102756											
C8B	732	broad.mit.edu	37	chr1	57409484	57409484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcacaggcatggacgttGttaagagtataatctgaaga	12	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57409484	T	T	57409484	3	4	106	1	0	0	0	0	1	0	0	0	2442	1368	48	3	676	3	C8B	1	57409484	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1897359	57409484	191841137	62	102757											
C1orf87	127795	broad.mit.edu	37	chr1	60491231	60491231	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggatacaaaatgtttcaaTagaatacaattaatatttgt	5	3	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60491231	C	C	60491231	1	2	106	0	1	0	0	0	0	0	0	0	2086	1421	49	5		5	C1orf87	1	60491231	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	3081747	60491231	188759390	63	102758											
KANK4	163782	broad.mit.edu	37	chr1	62738855	62738855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggctccctgtctcaggcCcctatattgatggtatttac	8	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62738855	A	A	62738855	1	1	106	0	1	0	0	0	0	0	0	0	8049	638	22	2		2	KANK4	1	62738855	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2247624	62738855	186511766	64	102759											
DOCK7	85440	broad.mit.edu	37	chr1	63048786	63048786	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagcatttggtaaacaCactaatgtgagtgctaacaa	8	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63048786	T	T	63048786	1	4	106	0	1	0	0	0	0	0	0	0	4732	493	17	4		4	DOCK7	1	63048786	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	309931	63048786	186201835	65	102760											
LEPR	3953	broad.mit.edu	37	chr1	66042551	66042551	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacacacccagatctgaaAtgttatttccaagttttctc	4	12	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66042551	C	C	66042551	1	2	106	0	1	0	0	0	0	0	0	0	8800	116	4	5		5	LEPR	1	66042551	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2993765	66042551	183208070	66	102761											
SGIP1	84251	broad.mit.edu	37	chr1	67154724	67154724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtttagtgtagtaactgCcaaggcaaaaaaaaaaaaaa	8	4	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67154724	A	A	67154724	1	1	106	0	1	0	0	0	0	0	0	0	14319	754	26	3		3	SGIP1	1	67154724	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1112173	67154724	182095897	67	102762											
INSL5	10022	broad.mit.edu	37	chr1	67266839	67266839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtctcacagactccttGctccgcacttctgagatggc	9	14	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67266839	T	T	67266839	3	4	106	1	0	0	0	0	1	0	0	0	7839	1310	46	3	349	3	INSL5	1	67266839	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	112115	67266839	181983782	68	102763											
WLS	79971	broad.mit.edu	37	chr1	68628638	68628638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaggatgggcatctccaCagtgcagtcgcggccgtcca	12	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68628638	A	A	68628638	1	1	106	0	1	0	0	0	0	0	0	0	17503	493	17	3		3	WLS	1	68628638	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1361799	68628638	180621983	69	102764											
LRRC7	57554	broad.mit.edu	37	chr1	70504811	70504811	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtacgtgcaacaggccagcAaaaacatcgccaaggatttg	10	10	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70504811	G	G	70504811	3	3	106	1	0	0	0	0	1	0	0	0	9107	131	5	5	3264	5	LRRC7	1	70504811	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1876173	70504811	178745810	70	102765											
NEGR1	257194	broad.mit.edu	37	chr1	72400910	72400910	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattgaaactcgaggatcCactgaccacttatcacctcc	6	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72400910	A	A	72400910	2	1	106	1	0	0	0	0	0	0	0	1	10412	581	21	2		2	NEGR1	1	72400910	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1896099	72400910	176849711	71	102766											
LRRIQ3	127255	broad.mit.edu	37	chr1	74648615	74648615	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcacagaaaatggtaaaaTattacacatataaaattcaa	4	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74648615	C	C	74648615	1	2	106	0	1	0	0	0	0	0	0	0	9117	1421	49	5		5	LRRIQ3	1	74648615	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2247705	74648615	174602006	72	102767											
C1orf173	127254	broad.mit.edu	37	chr1	75042610	75042610	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggacataggctaatggcaaTgaatcctttcctagttaaaa	8	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75042610	A	A	75042610	2	1	106	1	0	0	0	0	0	0	0	1	2034	1451	51	5		5	C1orf173	1	75042610	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	393995	75042610	174208011	73	102768											
C1orf173	127254	broad.mit.edu	37	chr1	75097613	75097613	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcactgccttcttgccCtgtaatcatatttcatcgca	4	13	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75097613	G	G	75097613	5	3	106	1	0	0	0	0	0	0	1	0	2034	695	24	4	4021	4	C1orf173	1	75097613	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	55003	75097613	174153008	74	102769											
C1orf173	127254	broad.mit.edu	37	chr1	75097784	75097784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacactttgtagtatctgCggcaaattaaaaattctaac	6	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75097784	A	A	75097784	1	1	106	0	1	0	0	0	0	0	0	0	2034	783	27	3		3	C1orf173	1	75097784	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	171	75097784	174152837	75	102770											
SLC44A5	204962	broad.mit.edu	37	chr1	75708484	75708484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctagaagatttgggagCttgttcagtaacaaattctc	8	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75708484	A	A	75708484	1	1	106	0	1	0	0	0	0	0	0	0	14753	812	28	3		3	SLC44A5	1	75708484	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	610700	75708484	173542137	76	102771											
AK5	26289	broad.mit.edu	37	chr1	77949064	77949064	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgagttttccttactgatCagatcaaagttgtcatttta	8	6	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77949064	G	G	77949064	1	3	106	0	1	0	0	0	0	0	0	0	443	841	29	4		4	AK5	1	77949064	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2240580	77949064	171301557	77	102772											
PTGFR	5737	broad.mit.edu	37	chr1	78959150	78959150	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagcagcacagacaaggcaGatctcatcatttggaaatgg	10	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78959150	C	C	78959150	3	2	106	1	0	0	0	0	1	0	0	0	12855	942	33	4	724	4	PTGFR	1	78959150	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1010086	78959150	170291471	78	102773											
ELTD1	64123	broad.mit.edu	37	chr1	79402013	79402013	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcttttctctttggaaAtatatttatgtagtctccat	6	7	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79402013	T	T	79402013	3	4	106	1	0	0	0	0	1	0	0	0	5126	101	4	5	1264	5	ELTD1	1	79402013	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	442863	79402013	169848608	79	102774											
HFM1	164045	broad.mit.edu	37	chr1	91794385	91794385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgctgagcctcatgggCatcccttaccttgatgcacc	8	15	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91794385	A	A	91794385	1	1	106	0	1	0	0	0	0	0	0	0	7150	725	25	3		3	HFM1	1	91794385	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	12392372	91794385	157456236	80	102775											
TGFBR3	7049	broad.mit.edu	37	chr1	92174229	92174229	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaagcacacctttagattCtgcttcatggtggatcacag	8	11	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92174229	A	A	92174229	4	1	106	1	0	0	0	0	0	1	0	0	15946	922	32	3	293	3	TGFBR3	1	92174229	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	379844	92174229	157076392	81	102776											
EVI5	7813	broad.mit.edu	37	chr1	93029339	93029339	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaacaagaggcaattttTcacagcatgtactcaaatag	6	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93029339	A	A	93029339	1	1	106	0	1	0	0	0	0	0	0	0	5331	1798	62	5		5	EVI5	1	93029339	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	855110	93029339	156221282	82	102777											
ABCA4	24	broad.mit.edu	37	chr1	94474443	94474443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcctagatgaagaaaagGggtcaggattgggctggctg	15	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94474443	T	T	94474443	1	4	106	0	1	0	0	0	0	0	0	0	34	1247	43	2		2	ABCA4	1	94474443	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1445104	94474443	154776178	83	102778											
ABCA4	24	broad.mit.edu	37	chr1	94544772	94544772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacttagcaaaaaacaaaCatgagatgtgctaccaggaa	7	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94544772	A	A	94544772	1	1	106	0	1	0	0	0	0	0	0	0	34	493	17	3		3	ABCA4	1	94544772	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	70329	94544772	154705849	84	102779											
ABCA4	24	broad.mit.edu	37	chr1	94574149	94574149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctgcaattctctccggGtgagtccggagggtgtccat	12	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94574149	T	T	94574149	3	4	106	1	0	0	0	0	1	0	0	0	34	1252	44	3	6583	3	ABCA4	1	94574149	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	29377	94574149	154676472	85	102780											
LPPR4	9890	broad.mit.edu	37	chr1	99767413	99767413	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaccacccagttgatgtctAttgtggctttttaataggag	10	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99767413	C	C	99767413	3	2	106	1	0	0	0	0	1	0	0	0	9014	449	16	5	948	5	LPPR4	1	99767413	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	5193264	99767413	149483208	86	102781											
AGL	178	broad.mit.edu	37	chr1	100336081	100336081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgtgatgttgcagaaGggaaatacaaagaaaaggga	12	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100336081	T	T	100336081	3	4	106	1	0	0	0	0	1	0	0	0	384	1000	35	2	877	2	AGL	1	100336081	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	568668	100336081	148914540	87	102782											
NTNG1	22854	broad.mit.edu	37	chr1	107973208	107973208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaacagatgctatttccGtgccagtcacaaccacctgt	7	12	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107973208	T	T	107973208	1	4	106	0	1	0	0	0	0	0	0	0	10799	1160	40	3		3	NTNG1	1	107973208	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	7637127	107973208	141277413	88	102783											
PRPF38B	55119	broad.mit.edu	37	chr1	109241225	109241225	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatcttttgtgtttctgtaGgacctagatgtgaaggctgg	13	5	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109241225	T	T	109241225	5	4	106	1	0	0	0	0	0	0	1	0	12674	1014	35	2	576	2	PRPF38B	1	109241225	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	1268017	109241225	140009396	89	102784											
AMPD2	271	broad.mit.edu	37	chr1	110168960	110168960	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctctacaaggaacagggtGaggggcagggtgaccggagc	19	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110168960	T	T	110168960	4	4	106	1	0	0	0	0	0	1	0	0	586	1291	45	3	663	3	AMPD2	1	110168960	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	927735	110168960	139081661	90	102785											
GSTM4	2948	broad.mit.edu	37	chr1	110200050	110200050	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacagcccctgcatgatgttCtgtgtcccagctcatttgtt	8	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110200050	T	T	110200050	1	4	106	0	1	0	0	0	0	0	0	0	6906	928	32	4		4	GSTM4	1	110200050	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	31090	110200050	139050571	91	102786											
GSTM5	2949	broad.mit.edu	37	chr1	110257934	110257934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagatgctttcccagtcCtggagctacacaaagaataa	7	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110257934	A	A	110257934	1	1	106	0	1	0	0	0	0	0	0	0	6907	696	24	2		2	GSTM5	1	110257934	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	57884	110257934	138992687	92	102787											
DRAM2	128338	broad.mit.edu	37	chr1	111674256	111674256	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctcatcctactttagccatCcatgcccacagccttgtact	4	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111674256	A	A	111674256	1	1	106	0	1	0	0	0	0	0	0	0	4794	870	30	3		3	DRAM2	1	111674256	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1416322	111674256	137576365	93	102788											
CHI3L2	1117	broad.mit.edu	37	chr1	111770280	111770280	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttgcttctttcgtgtaGgacaggctgtcgaaacctca	9	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111770280	T	T	111770280	1	4	106	0	1	0	0	0	0	0	0	0	3372	1015	35	2		2	CHI3L2	1	111770280	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	96024	111770280	137480341	94	102789											
FAM19A3	284467	broad.mit.edu	37	chr1	113266601	113266601	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccactgtgctcgtagagaCcctagagctgcactccgcct	10	16	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113266601	T	T	113266601	1	4	106	0	1	0	0	0	0	0	0	0	5580	506	18	4		4	FAM19A3	1	113266601	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1496321	113266601	135984020	95	102790											
SYT6	148281	broad.mit.edu	37	chr1	114640465	114640465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcagcagtgatccccaCacgacagactcctatgatct	7	15	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114640465	A	A	114640465	3	1	106	1	0	0	0	0	1	0	0	0	15597	478	17	3	141	3	SYT6	1	114640465	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1373864	114640465	134610156	96	102791											
CASQ2	845	broad.mit.edu	37	chr1	116260375	116260375	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgcattgtggatgggatGtgagagaagagaaaggtgag	18	1	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116260375	A	A	116260375	1	1	106	0	1	0	0	0	0	0	0	0	2707	1392	48	4		4	CASQ2	1	116260375	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1619910	116260375	132990246	97	102792											
PTGFRN	5738	broad.mit.edu	37	chr1	117509740	117509740	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggattctgtggtgaagcTggagaattggacagatgcat	14	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117509740	C	C	117509740	3	2	106	1	0	0	0	0	1	0	0	0	12856	1580	55	5	1869	5	PTGFRN	1	117509740	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	1249365	117509740	131740881	98	102793											
SPAG17	200162	broad.mit.edu	37	chr1	118693337	118693337	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taactttcaaatatctaggtGatctgaagggttggggaacc	11	6	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118693337	T	T	118693337	1	4	106	0	1	0	0	0	0	0	0	0	15095	1305	45	3		3	SPAG17	1	118693337	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1183597	118693337	130557284	99	102794											
WARS2	10352	broad.mit.edu	37	chr1	119619185	119619185	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaattgcccaggtggaggaTtcctgtaggttgaatgccgg	15	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119619185	C	C	119619185	3	2	106	1	0	0	0	0	1	0	0	0	17377	1493	52	5	995	5	WARS2	1	119619185	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	925848	119619185	129631436	100	102795											
PHGDH	26227	broad.mit.edu	37	chr1	120266093	120266093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacttctcagcaaagctaGtctctccgatatgccaatta	6	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120266093	T	T	120266093	1	4	106	0	1	0	0	0	0	0	0	0	11936	1044	36	3		3	PHGDH	1	120266093	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	646908	120266093	128984528	101	102796											
PDE4DIP	9659	broad.mit.edu	37	chr1	144854300	144854300	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaattctaaagcatttattTctttctggctattcagcttg	6	7	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144854300	C	C	144854300	1	2	106	0	1	0	0	0	0	0	0	0	11737	1798	62	5		5	PDE4DIP	1	144854300	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	24588207	144854300	104396321	102	102797											
NBPF10	100132406	broad.mit.edu	37	chr1	145300050	145300050	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatccttcctgtacttctAggaaaacagaaatgggtatt	7	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145300050	G	G	145300050	1	3	106	0	1	0	0	0	0	0	0	0	10287	435	15	5		5	NBPF10	1	145300050	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	445750	145300050	103950571	103	102798											
HIST2H2BE	8349	broad.mit.edu	37	chr1	149858222	149858222	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacaaacgcggcttagccaAgaaaagaagtaagagaatgg	12	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149858222	G	G	149858222	1	3	106	0	1	0	0	0	0	0	0	0	7246	87	3	5		5	HIST2H2BE	1	149858222	5'UTR	SNP	A	TCGA-44-2656-01A-02D-0969-08	4558172	149858222	99392399	104	102799											
SV2A	9900	broad.mit.edu	37	chr1	149877220	149877220	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccaggctggtctcaaactCctgacctcaggtgatctgcc	11	14	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149877220	T	T	149877220	1	4	106	0	1	0	0	0	0	0	0	0	15535	870	30	4		4	SV2A	1	149877220	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	18998	149877220	99373401	105	102800											
ENSA	2029	broad.mit.edu	37	chr1	150601402	150601402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctcttgagaaagttgcCgccttaaactagccattata	8	9	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150601402	A	A	150601402	1	1	106	0	1	0	0	0	0	0	0	0	5178	667	23	1		1	ENSA	1	150601402	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	724182	150601402	98649219	106	102801											
ANXA9	8416	broad.mit.edu	37	chr1	150955499	150955499	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagggtccagggtctcggGggggtcataaggagtccctg	17	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150955499	A	A	150955499	1	1	106	0	1	0	0	0	0	0	0	0	727	1247	43	4		4	ANXA9	1	150955499	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	354097	150955499	98295122	107	102802											
PIP5K1A	8394	broad.mit.edu	37	chr1	151204252	151204252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcatgcaagatttctacGtggttgagagtatcttcttt	8	8	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151204252	T	T	151204252	3	4	106	1	0	0	0	0	1	0	0	0	12034	1145	40	3	361	3	PIP5K1A	1	151204252	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	248753	151204252	98046369	108	102803											
PI4KB	5298	broad.mit.edu	37	chr1	151288658	151288658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcccccatctcatcttcCtcctccctgatctgggcagg	9	18	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151288658	A	A	151288658	3	1	106	1	0	0	0	0	1	0	0	0	11969	680	24	2	2194	2	PI4KB	1	151288658	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	84406	151288658	97961963	109	102804											
SNX27	81609	broad.mit.edu	37	chr1	151633127	151633128	+	Intron	INS	-	CA	CA													tgccttaaaatcttatatacINScagacatggtttgctgcctc					rs150621864	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	151633128	CA	CA	151633127	6	5	106	0	1	1	1	0	0	0	0	0	15011	522	18	0		0	SNX27	1	151633127	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	344469	151633127	97617494	110	102805											
FLG	2312	broad.mit.edu	37	chr1	152285480	152285480	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagtcttctgagtgtccctGactgtcactgtcctggctaa	10	11	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152285480	C	C	152285480	3	2	106	1	0	0	0	0	1	0	0	0	5979	1299	45	4	10307	4	FLG	1	152285480	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	652353	152285480	96965141	111	102806											
LCE3D	84648	broad.mit.edu	37	chr1	152552354	152552354	+	Missense_Mutation	SNP	T	A	A													ctgggctctttgggggacacTtgggtgagggacacttgggt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152552354	A	A	152552354	3	1	106	1	0	0	0	0	1	0	0	0	8744	1609	56	5	223	5	LCE3D	1	152552354	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	266874	152552354	96698267	112	102807	448	2									
LCE3D	84648	broad.mit.edu	37	chr1	152552359	152552359	+	Silent	SNP	T	G	G													ctctttgggggacacttgggTgagggacacttgggtggggg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152552359	G	G	152552359	2	3	106	1	0	0	0	0	0	0	0	1	8744	1683	59	5		5	LCE3D	1	152552359	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	5	152552359	96698262	113	102808	448	2									
LCE3D	84648	broad.mit.edu	37	chr1	152552407	152552407	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctggttctgctggcaGgacatcttggcaggagttga	15	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152552407	T	T	152552407	2	4	106	1	0	0	0	0	0	0	0	1	8744	987	35	2		2	LCE3D	1	152552407	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	48	152552407	96698214	114	102809											
LCE4A	199834	broad.mit.edu	37	chr1	152681629	152681629	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtatcccccaaaatgtccCtcaaagtgtgcatcctcatg	6	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152681629	T	T	152681629	2	4	106	1	0	0	0	0	0	0	0	1	8746	668	24	4		4	LCE4A	1	152681629	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	129222	152681629	96568992	115	102810											
SPRR1B	6699	broad.mit.edu	37	chr1	153005016	153005016	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaggttccagagccatgCcaccccaaggtgcctgagcc	10	17	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153005016	A	A	153005016	4	1	106	1	0	0	0	0	0	1	0	0	15214	747	26	3	197	3	SPRR1B	1	153005016	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	323387	153005016	96245605	116	102811											
SPRR2E	6704	broad.mit.edu	37	chr1	153066043	153066043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggacactttggctggcagGgtggggaaggtgtcacagga	19	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153066043	T	T	153066043	3	4	106	1	0	0	0	0	1	0	0	0	15218	1232	43	2	37	2	SPRR2E	1	153066043	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	61027	153066043	96184578	117	102812											
LELP1	149018	broad.mit.edu	37	chr1	153177368	153177368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaagtgcctgccctgccCctcgcagtctccttcatcct	6	20	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153177368	A	A	153177368	3	1	106	1	0	0	0	0	1	0	0	0	8790	623	22	2	187	2	LELP1	1	153177368	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	111325	153177368	96073253	118	102813											
DENND4B	9909	broad.mit.edu	37	chr1	153905198	153905198	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcacagggccaggaccacCagggacaggagcatctttgc	14	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153905198	G	G	153905198	3	3	106	1	0	0	0	0	1	0	0	0	4474	594	21	4	835	4	DENND4B	1	153905198	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	727830	153905198	95345423	119	102814											
NUP210L	91181	broad.mit.edu	37	chr1	154098755	154098756	+	Intron	DNP	CT	AA	AA													tcaacaagtcagccaagcctCttcagtgttcttagaataca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	154098756	AA	AA	154098755	1	1	106	0	1	0	0	0	0	0	0	0	10856	928	32	3		3	NUP210L	1	154098755	Intron	DNP	CT	TCGA-44-2656-01A-02D-0969-08	193557	154098755	95151866	120	102815											
EFNA3	1944	broad.mit.edu	37	chr1	155058727	155058727	+	Intron	DEL	C	-	-													ggccactgctggaaccgcagCcccccgccccggtgcctgct							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155058727	-	-	155058727	6	5	106	0	1	1	0	1	0	0	0	0	4992	754	26	0		0	EFNA3	1	155058727	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	959972	155058727	94191894	121	102816											
LMNA	4000	broad.mit.edu	37	chr1	156106669	156106669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatacacccaagagcctGggtgagcctccccgaccttc	9	16	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156106669	T	T	156106669	1	4	106	0	1	0	0	0	0	0	0	0	8922	1363	47	2		2	LMNA	1	156106669	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1047942	156106669	93143952	122	102817											
RHBG	57127	broad.mit.edu	37	chr1	156346892	156346892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggacagcagggatgtcggGgtcccactgctccaagctgg	16	11	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156346892	T	T	156346892	1	4	106	0	1	0	0	0	0	0	0	0	13433	1247	43	2		2	RHBG	1	156346892	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	240223	156346892	92903729	123	102818											
IQGAP3	128239	broad.mit.edu	37	chr1	156507150	156507150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggtgtaagcaggagccCcctccaatggcctccttccc	9	16	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156507150	A	A	156507150	1	1	106	0	1	0	0	0	0	0	0	0	7886	638	22	2		2	IQGAP3	1	156507150	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	160258	156507150	92743471	124	102819											
NES	10763	broad.mit.edu	37	chr1	156644959	156644959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacgtagtctgccccagCatgtgtgtgtgcctctgtgt	12	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156644959	A	A	156644959	1	1	106	0	1	0	0	0	0	0	0	0	10432	725	25	3		3	NES	1	156644959	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	137809	156644959	92605662	125	102820											
HDGF	3068	broad.mit.edu	37	chr1	156721086	156721086	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcccttcccggtgttatGcaacccaagcccgcaggggg	13	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156721086	A	A	156721086	1	1	106	0	1	0	0	0	0	0	0	0	7085	1334	46	4		4	HDGF	1	156721086	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	76127	156721086	92529535	126	102821											
NTRK1	4914	broad.mit.edu	37	chr1	156786037	156786037	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcagcaggggagtttctcAggcatgaggttaagtagcca	16	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156786037	T	T	156786037	1	4	106	0	1	0	0	0	0	0	0	0	10801	203	7	5		5	NTRK1	1	156786037	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	64951	156786037	92464584	127	102822											
NTRK1	4914	broad.mit.edu	37	chr1	156834308	156834308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcaagcatccgagggcCtgggaggacctgagaggctg	18	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156834308	A	A	156834308	1	1	106	0	1	0	0	0	0	0	0	0	10801	696	24	2		2	NTRK1	1	156834308	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	48271	156834308	92416313	128	102823											
ARHGEF11	9826	broad.mit.edu	37	chr1	156909829	156909829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagctggagggctctggcCaactagctggtgggggttgg	19	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156909829	A	A	156909829	1	1	106	0	1	0	0	0	0	0	0	0	898	609	21	2		2	ARHGEF11	1	156909829	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	75521	156909829	92340792	129	102824											
FCRL4	83417	broad.mit.edu	37	chr1	157556176	157556176	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacggagcagacaaggaccAgcatctccccttcaacagcc	8	17	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157556176	T	T	157556176	3	4	106	1	0	0	0	0	1	0	0	0	5854	188	7	5	658	5	FCRL4	1	157556176	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	646347	157556176	91694445	130	102825											
CD5L	922	broad.mit.edu	37	chr1	157803126	157803126	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccccagggccatagcattTccggtctctgaaggagggag	13	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157803126	A	A	157803126	4	1	106	1	0	0	0	0	0	1	0	0	3057	1792	62	5	156	5	CD5L	1	157803126	Nonsense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	246950	157803126	91447495	131	102826											
CD1C	911	broad.mit.edu	37	chr1	158261701	158261701	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catttatctcttattgtcccCttccctatccccagcaattt	2	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158261701	G	G	158261701	1	3	106	0	1	0	0	0	0	0	0	0	3006	696	24	4		4	CD1C	1	158261701	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	458575	158261701	90988920	132	102827											
CD1E	913	broad.mit.edu	37	chr1	158323730	158323730	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggggtactgatatctgaatTattagggcaggtgtcctgcc	13	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158323730	A	A	158323730	1	1	106	0	1	0	0	0	0	0	0	0	3008	1769	61	5		5	CD1E	1	158323730	5'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	62029	158323730	90926891	133	102828											
SPTA1	6708	broad.mit.edu	37	chr1	158589184	158589184	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcctttctttgccataagaGaattggtttgtaggcttaac	10	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158589184	T	T	158589184	1	4	106	0	1	0	0	0	0	0	0	0	15234	957	33	3		3	SPTA1	1	158589184	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	265454	158589184	90661437	134	102829											
SPTA1	6708	broad.mit.edu	37	chr1	158612858	158612858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccatttgccaacatgcCtcttttcttctcacatagtc	3	15	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158612858	A	A	158612858	1	1	106	0	1	0	0	0	0	0	0	0	15234	696	24	2		2	SPTA1	1	158612858	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	23674	158612858	90637763	135	102830											
SPTA1	6708	broad.mit.edu	37	chr1	158637964	158637964	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaacgaacgatgctaacaaGaagataaaagggggaagttt	11	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158637964	T	T	158637964	1	4	106	0	1	0	0	0	0	0	0	0	15234	957	33	3		3	SPTA1	1	158637964	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	25106	158637964	90612657	136	102831											
OR6K2	81448	broad.mit.edu	37	chr1	158670253	158670253	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggaaagaaagagcacTgataaaagtatacatgggag	11	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158670253	A	A	158670253	3	1	106	1	0	0	0	0	1	0	0	0	11296	1580	55	5	788	5	OR6K2	1	158670253	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	32289	158670253	90580368	137	102832											
OR6K3	391114	broad.mit.edu	37	chr1	158687393	158687393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatctgatggatttggttGggcccacagaaaggcagtgt	14	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158687393	T	T	158687393	2	4	106	1	0	0	0	0	0	0	0	1	11297	1335	47	2		2	OR6K3	1	158687393	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	17140	158687393	90563228	138	102833											
MNDA	4332	broad.mit.edu	37	chr1	158811814	158811814	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagtccctttttcttatacGcatccaaggacaacattttg	5	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158811814	C	C	158811814	1	2	106	0	1	0	0	0	0	0	0	0	9770	1102	38	4		4	MNDA	1	158811814	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	124421	158811814	90438807	139	102834											
MNDA	4332	broad.mit.edu	37	chr1	158815548	158815548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtaagactcaatatttcCatgtgaaagtcttcgacatc	6	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158815548	A	A	158815548	3	1	106	1	0	0	0	0	1	0	0	0	9770	594	21	2	756	2	MNDA	1	158815548	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3734	158815548	90435073	140	102835											
IGSF8	93185	broad.mit.edu	37	chr1	160063200	160063200	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattccccaacttcctgtttCctacttgacagcagcaactt	5	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160063200	A	A	160063200	1	1	106	0	1	0	0	0	0	0	0	0	7674	870	30	3		3	IGSF8	1	160063200	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1247652	160063200	89187421	141	102836											
SLAMF1	6504	broad.mit.edu	37	chr1	160589779	160589779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctgagtcccagcccccCtgcacatttgtcatattgtc	7	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160589779	A	A	160589779	1	1	106	0	1	0	0	0	0	0	0	0	14480	696	24	2		2	SLAMF1	1	160589779	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	526579	160589779	88660842	142	102837											
SLAMF7	57823	broad.mit.edu	37	chr1	160708987	160708987	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcaatctcacatgtctgCggcgtgacccctcctgcttc	7	16	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160708987	A	A	160708987	1	1	106	0	1	0	0	0	0	0	0	0	14482	783	27	3		3	SLAMF7	1	160708987	5'Flank	SNP	C	TCGA-44-2656-01A-02D-0969-08	119208	160708987	88541634	143	102838											
CD244	51744	broad.mit.edu	37	chr1	160808305	160808305	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaattccttgggactgGtctctgagggaggaagaaaa	12	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160808305	T	T	160808305	3	4	106	1	0	0	0	0	1	0	0	0	3017	1261	44	3	347	3	CD244	1	160808305	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	99318	160808305	88442316	144	102839											
CD244	51744	broad.mit.edu	37	chr1	160811267	160811267	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctgtaggcggggtttctCaactttatctggaagcagag	12	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160811267	A	A	160811267	4	1	106	1	0	0	0	0	0	1	0	0	3017	835	29	3	737	3	CD244	1	160811267	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2962	160811267	88439354	145	102840											
FCRLA	84824	broad.mit.edu	37	chr1	161680653	161680653	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagggaagctggcttccaGgtcaaggcctacactttcag	12	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161680653	A	A	161680653	2	1	106	1	0	0	0	0	0	0	0	1	5857	991	35	4		4	FCRLA	1	161680653	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	869386	161680653	87569968	146	102841											
FCRLA	84824	broad.mit.edu	37	chr1	161680697	161680698	+	Nonsense_Mutation	DNP	CC	AA	AA													acccttccacctgattgtgtCctatggtgaggtcctgggaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	161680698	AA	AA	161680697	4	1	106	1	0	0	0	0	0	1	0	0	5857	855	30	3	306	3	FCRLA	1	161680697	Nonsense_Mutation	DNP	CC	TCGA-44-2656-01A-02D-0969-08	44	161680697	87569924	147	102842											
NOS1AP	9722	broad.mit.edu	37	chr1	162039935	162039935	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccttcctgcagccgccGcctccgaaggagcgggtccg	13	18	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162039935	T	T	162039935	1	4	106	0	1	0	0	0	0	0	0	0	10637	1102	38	3		3	NOS1AP	1	162039935	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	359238	162039935	87210686	148	102843											
NOS1AP	9722	broad.mit.edu	37	chr1	162336927	162336927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgacccctaagccagaGgacctgcattcgccgccgct	9	19	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162336927	T	T	162336927	3	4	106	1	0	0	0	0	1	0	0	0	10637	991	35	2	1283	2	NOS1AP	1	162336927	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	296992	162336927	86913694	149	102844											
NUF2	83540	broad.mit.edu	37	chr1	163298635	163298635	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgtacttcatcttcaaGggactcatttttgcctatct	5	9	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163298635	T	T	163298635	5	4	106	1	0	0	0	0	0	0	1	0	10842	1014	35	2	289	2	NUF2	1	163298635	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	961708	163298635	85951986	150	102845											
RXRG	6258	broad.mit.edu	37	chr1	165389057	165389057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatccaggcagacagtgagCagccccttctctgtggcact	11	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165389057	A	A	165389057	1	1	106	0	1	0	0	0	0	0	0	0	13876	725	25	3		3	RXRG	1	165389057	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2090422	165389057	83861564	151	102846											
TBX19	9095	broad.mit.edu	37	chr1	168208127	168208127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatacgggttatctccaCatgaaccttttgcccttctt	7	12	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168208127	A	A	168208127	1	1	106	0	1	0	0	0	0	0	0	0	15776	493	17	3		3	TBX19	1	168208127	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2819070	168208127	81042494	152	102847											
F5	2153	broad.mit.edu	37	chr1	169551806	169551806	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaaaggcatattcaatatCtatttctcacattacaaaaa	3	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169551806	A	A	169551806	1	1	106	0	1	0	0	0	0	0	0	0	5391	928	32	3		3	F5	1	169551806	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1343679	169551806	79698815	153	102848											
SELE	6401	broad.mit.edu	37	chr1	169698625	169698625	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtctccatgtggaacaactCtacctttacacgttggcttc	7	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169698625	A	A	169698625	1	1	106	0	1	0	0	0	0	0	0	0	14126	928	32	3		3	SELE	1	169698625	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	146819	169698625	79551996	154	102849											
SLC9A11	284525	broad.mit.edu	37	chr1	173502736	173502736	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatcttaatattttaaaatGtgaaatcttaccttgaagag	5	4	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173502736	A	A	173502736	1	1	106	0	1	0	0	0	0	0	0	0	14825	1392	48	4		4	SLC9A11	1	173502736	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3804111	173502736	75747885	155	102850											
KLHL20	27252	broad.mit.edu	37	chr1	173735426	173735426	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttgcctcaacattgttgaGaggtgatcttttttttaagt	8	6	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173735426	T	T	173735426	3	4	106	1	0	0	0	0	1	0	0	0	8446	933	33	3	1319	3	KLHL20	1	173735426	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	232690	173735426	75515195	156	102851											
TNN	63923	broad.mit.edu	37	chr1	175046490	175046490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctcagcacatctccgtGgctttcttttgcaatgtttc	6	13	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175046490	T	T	175046490	1	4	106	0	1	0	0	0	0	0	0	0	16446	1363	47	2		2	TNN	1	175046490	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1311064	175046490	74204131	157	102852											
PAPPA2	60676	broad.mit.edu	37	chr1	176525673	176525673	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacctctttggagtctaccCcagcagggctgggaactacc	10	14	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176525673	G	G	176525673	3	3	106	1	0	0	0	0	1	0	0	0	11527	623	22	4	217	4	PAPPA2	1	176525673	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1479183	176525673	72724948	158	102853											
C1orf49	84066	broad.mit.edu	37	chr1	178490160	178490160	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccgagcctgcgccctccctGacctgccttgccttctaggc	9	20	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178490160	T	T	178490160	1	4	106	0	1	0	0	0	0	0	0	0	2063	1305	45	3		3	C1orf49	1	178490160	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1964487	178490160	70760461	159	102854											
RALGPS2	55103	broad.mit.edu	37	chr1	178854254	178854255	+	Missense_Mutation	DNP	GG	CT	CT													cagagtggacgaaaaagtgtGgcagctgaaggagccttgct							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	178854255	CT	CT	178854254	3	2	106	1	0	0	0	0	1	0	0	0	13126	1335	47	4	990	4	RALGPS2	1	178854254	Missense_Mutation	DNP	GG	TCGA-44-2656-01A-02D-0969-08	364094	178854254	70396367	160	102855											
CEP350	9857	broad.mit.edu	37	chr1	180080331	180080331	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgaacgctgagtgctaatGtgagtcctgggcctttctgc	12	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180080331	T	T	180080331	1	4	106	0	1	0	0	0	0	0	0	0	3284	1392	48	3		3	CEP350	1	180080331	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	1226077	180080331	69170290	161	102856											
CACNA1E	777	broad.mit.edu	37	chr1	181689959	181689959	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccttcggcaaattttgatAccttccctgcagccatcatg	6	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181689959	C	C	181689959	3	2	106	1	0	0	0	0	1	0	0	0	2568	391	14	5	1982	5	CACNA1E	1	181689959	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1609628	181689959	67560662	162	102857											
CACNA1E	777	broad.mit.edu	37	chr1	181740584	181740584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagagagagtttgtctgCctcttcctcccatttccctt	9	12	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181740584	A	A	181740584	1	1	106	0	1	0	0	0	0	0	0	0	2568	754	26	3		3	CACNA1E	1	181740584	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	50625	181740584	67510037	163	102858											
CACNA1E	777	broad.mit.edu	37	chr1	181759585	181759585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacattgcttttcaggagtGgccggagtggatacccttcg	13	9	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181759585	T	T	181759585	3	4	106	1	0	0	0	0	1	0	0	0	2568	1348	47	2	5965	2	CACNA1E	1	181759585	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	19001	181759585	67491036	164	102859											
LAMC1	3915	broad.mit.edu	37	chr1	183090909	183090909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtgctcgtcctgggcctgGagtccctgcaacttgggtgg	15	11	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183090909	T	T	183090909	3	4	106	1	0	0	0	0	1	0	0	0	8686	1174	41	3	2088	3	LAMC1	1	183090909	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1331324	183090909	66159712	165	102860											
APOBEC4	403314	broad.mit.edu	37	chr1	183617876	183617876	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaatatggttttactattGttccatgatttgctaggtac	8	5	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183617876	A	A	183617876	3	1	106	1	0	0	0	0	1	0	0	0	798	1377	48	4	1066	4	APOBEC4	1	183617876	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	526967	183617876	65632745	166	102861											
RGL1	23179	broad.mit.edu	37	chr1	183853843	183853843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtccttaaagtcagttcCtcttttgttccagcaactct	6	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183853843	A	A	183853843	1	1	106	0	1	0	0	0	0	0	0	0	13384	696	24	2		2	RGL1	1	183853843	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	235967	183853843	65396778	167	102862											
HMCN1	83872	broad.mit.edu	37	chr1	185892747	185892747	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagatgattacctcttccAgagagtatcaagtgtttcct	7	8	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185892747	G	G	185892747	3	3	106	1	0	0	0	0	1	0	0	0	7287	188	7	5	1277	5	HMCN1	1	185892747	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	2038904	185892747	63357874	168	102863											
HMCN1	83872	broad.mit.edu	37	chr1	186107158	186107158	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttttctatcttaaccccTatgaaagaattacatttgcc	3	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186107158	A	A	186107158	1	1	106	0	1	0	0	0	0	0	0	0	7287	1537	53	5		5	HMCN1	1	186107158	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	214411	186107158	63143463	169	102864											
HMCN1	83872	broad.mit.edu	37	chr1	186114769	186114769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttagtgctcattgtagcaGgcctattgcttcagacctta	8	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186114769	T	T	186114769	1	4	106	0	1	0	0	0	0	0	0	0	7287	1015	35	2		2	HMCN1	1	186114769	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	7611	186114769	63135852	170	102865											
FAM5C	339479	broad.mit.edu	37	chr1	190067423	190067423	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcccgaattgcttcagggtCaaagtgcatgctgtagccaa	11	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190067423	G	G	190067423	3	3	106	1	0	0	0	0	1	0	0	0	5645	826	29	4	278	4	FAM5C	1	190067423	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3952654	190067423	59183198	171	102866											
FAM5C	339479	broad.mit.edu	37	chr1	190250721	190250721	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagatagcaagaaatgtgtCccatatttcttgataaggtt	9	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190250721	A	A	190250721	2	1	106	1	0	0	0	0	0	0	0	1	5645	842	30	3		3	FAM5C	1	190250721	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	183298	190250721	58999900	172	102867											
RGS21	431704	broad.mit.edu	37	chr1	192312066	192312066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacccaggggataggtattcGcatactaattgtaatgttcc	9	8	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192312066	A	A	192312066	1	1	106	0	1	0	0	0	0	0	0	0	13413	1102	38	4		4	RGS21	1	192312066	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2061345	192312066	56938555	173	102868											
CFH	3075	broad.mit.edu	37	chr1	196709593	196709593	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgatagacagacagacaccaGaaggctagttttaggaaaca	10	8	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196709593	C	C	196709593	1	2	106	0	1	0	0	0	0	0	0	0	3313	957	33	4		4	CFH	1	196709593	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4397527	196709593	52541028	174	102869											
CFHR4	10877	broad.mit.edu	37	chr1	196871741	196871741	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaccaacggtcccatgCctcagtaagtaaacctcttt	7	13	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196871741	A	A	196871741	4	1	106	1	0	0	0	0	0	1	0	0	3317	747	26	3	258	3	CFHR4	1	196871741	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	162148	196871741	52378880	175	102870											
CFHR5	81494	broad.mit.edu	37	chr1	196946876	196946876	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgaaaacagatccgaatAttttagttccttttcaaatg	6	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196946876	G	G	196946876	1	3	106	0	1	0	0	0	0	0	0	0	3318	464	16	5		5	CFHR5	1	196946876	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	75135	196946876	52303745	176	102871											
CFHR5	81494	broad.mit.edu	37	chr1	196967432	196967432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcctgaagtagactgcaCaggtaagatttgtttaaaac	9	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196967432	A	A	196967432	3	1	106	1	0	0	0	0	1	0	0	0	3318	478	17	3	1171	3	CFHR5	1	196967432	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	20556	196967432	52283189	177	102872											
ASPM	259266	broad.mit.edu	37	chr1	197060988	197060988	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttattacatatcaaaaatttCtaacagaaaaattatatcat	1	5	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197060988	T	T	197060988	1	4	106	0	1	0	0	0	0	0	0	0	1060	928	32	4		4	ASPM	1	197060988	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	93556	197060988	52189633	178	102873											
ASPM	259266	broad.mit.edu	37	chr1	197070066	197070066	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacagcagagtgcagatTggttaacaatggctgccatc	11	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197070066	C	C	197070066	3	2	106	1	0	0	0	0	1	0	0	0	1060	1812	63	5	2162	5	ASPM	1	197070066	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	9078	197070066	52180555	179	102874											
ASPM	259266	broad.mit.edu	37	chr1	197102471	197102471	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatgtcaagatttctgcagTcttcttacccacatctttcc	4	12	5	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197102471	A	A	197102471	1	1	106	0	1	0	0	0	0	0	0	0	1060	1682	58	5		5	ASPM	1	197102471	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	32405	197102471	52148150	180	102875											
CRB1	23418	broad.mit.edu	37	chr1	197411194	197411194	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtgtggatgggtagataaGactgtgctgttccagagaga	15	4	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197411194	T	T	197411194	1	4	106	0	1	0	0	0	0	0	0	0	3880	957	33	3		3	CRB1	1	197411194	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	308723	197411194	51839427	181	102876											
LHX9	56956	broad.mit.edu	37	chr1	197890482	197890482	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaccttggcatttccgcCtcggagatggtcatgcgcgc	12	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197890482	A	A	197890482	2	1	106	1	0	0	0	0	0	0	0	1	8849	668	24	2		2	LHX9	1	197890482	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	479288	197890482	51360139	182	102877											
PTPRC	5788	broad.mit.edu	37	chr1	198723577	198723577	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacatgctcggaatttttTttttctttttgacggtttcc	6	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198723577	C	C	198723577	1	2	106	0	1	0	0	0	0	0	0	0	12905	1856	64	5		5	PTPRC	1	198723577	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	833095	198723577	50527044	183	102878											
NR5A2	2494	broad.mit.edu	37	chr1	200116836	200116836	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctccgaggcgatctcctcCagctcctccctgagcgcctc	10	19	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200116836	T	T	200116836	1	4	106	0	1	0	0	0	0	0	0	0	10731	609	21	4		4	NR5A2	1	200116836	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1393259	200116836	49133785	184	102879											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200709129	200709129	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctttccctcccctcttcctCctgatgtggtccacatctcg	5	19	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200709129	T	T	200709129	1	4	106	0	1	0	0	0	0	0	0	0	2638	870	30	4		4	CAMSAP1L1	1	200709129	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	592293	200709129	48541492	185	102880											
PPP1R12B	4660	broad.mit.edu	37	chr1	202398051	202398051	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagttgctccagaagaagcaGaatgtggtgagtttctgatt	13	5	1	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202398051	T	T	202398051	3	4	106	1	0	0	0	0	1	0	0	0	12456	933	33	3	937	3	PPP1R12B	1	202398051	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1688922	202398051	46852570	186	102881											
PPP1R12B	4660	broad.mit.edu	37	chr1	202400955	202400955	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaattcctgtgtagccatAtgataaggtgcacaaagaat	8	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202400955	T	T	202400955	1	4	106	0	1	0	0	0	0	0	0	0	12456	464	16	5		5	PPP1R12B	1	202400955	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2904	202400955	46849666	187	102882											
KDM5B	10765	broad.mit.edu	37	chr1	202735991	202735991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgagagaaatccagtgCcagacagccattggtattag	10	9	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202735991	A	A	202735991	1	1	106	0	1	0	0	0	0	0	0	0	8204	754	26	3		3	KDM5B	1	202735991	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	335036	202735991	46514630	188	102883											
MYBPH	4608	broad.mit.edu	37	chr1	203137866	203137866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactggaaagttcacggttAtacaccctcttctacacctg	7	12	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203137866	G	G	203137866	1	3	106	0	1	0	0	0	0	0	0	0	10108	464	16	5		5	MYBPH	1	203137866	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	401875	203137866	46112755	189	102884											
PRELP	5549	broad.mit.edu	37	chr1	203452395	203452395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaacaagacgaccaagacCcgggactgggcccgggcgca	14	15	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203452395	A	A	203452395	3	1	106	1	0	0	0	0	1	0	0	0	12579	623	22	2	85	2	PRELP	1	203452395	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	314529	203452395	45798226	190	102885											
PIK3C2B	5287	broad.mit.edu	37	chr1	204416817	204416817	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccctccctcactttccctCaggttctttgtaaaatagcc	5	15	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204416817	T	T	204416817	1	4	106	0	1	0	0	0	0	0	0	0	12005	841	29	4		4	PIK3C2B	1	204416817	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	964422	204416817	44833804	191	102886											
CNTN2	6900	broad.mit.edu	37	chr1	205030382	205030382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgccagccctgtcccCcggatcaagtggcgcaaagt	10	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205030382	A	A	205030382	2	1	106	1	0	0	0	0	0	0	0	1	3673	610	22	2		2	CNTN2	1	205030382	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	613565	205030382	44220239	192	102887											
CNTN2	6900	broad.mit.edu	37	chr1	205042265	205042265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagaactggatagaaatcCcagtgcctgaagacattggc	11	9	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205042265	A	A	205042265	3	1	106	1	0	0	0	0	1	0	0	0	3673	623	22	2	2996	2	CNTN2	1	205042265	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	11883	205042265	44208356	193	102888											
SRGAP2	23380	broad.mit.edu	37	chr1	206611329	206611329	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggagaggaccccctggCtggggaccagaacgaccatg	14	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206611329	T	T	206611329	3	4	106	1	0	0	0	0	1	0	0	0	15264	797	28	4	1439	4	SRGAP2	1	206611329	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1569064	206611329	42639292	194	102889											
SRGAP2	23380	broad.mit.edu	37	chr1	206634713	206634713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaatgccactagccctgGtgtcaactcatcaacttccc	5	15	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206634713	T	T	206634713	3	4	106	1	0	0	0	0	1	0	0	0	15264	1261	44	3	2986	3	SRGAP2	1	206634713	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	23384	206634713	42615908	195	102890											
KCNH1	3756	broad.mit.edu	37	chr1	211256166	211256166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattctcgcctttttgcaCgcttggagccagctgctgca	10	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211256166	A	A	211256166	3	1	106	1	0	0	0	0	1	0	0	0	8101	536	19	3	2483	3	KCNH1	1	211256166	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4621453	211256166	37994455	196	102891											
SMYD2	56950	broad.mit.edu	37	chr1	214504121	214504121	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttctgtaaaaaggtaAtggagtactgaatttcttca	8	4	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214504121	T	T	214504121	1	4	106	0	1	0	0	0	0	0	0	0	14936	116	4	5		5	SMYD2	1	214504121	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3247955	214504121	34746500	197	102892											
KCTD3	51133	broad.mit.edu	37	chr1	215759874	215759874	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggatggcagcaagtgtttacGagcccatatttggattggac	13	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215759874	C	C	215759874	2	2	106	1	0	0	0	0	0	0	0	1	8180	1045	37	4		4	KCTD3	1	215759874	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1255753	215759874	33490747	198	102893											
KCTD3	51133	broad.mit.edu	37	chr1	215777454	215777454	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccataatgtatcacctgtCaactcttgactttatatagg	5	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215777454	T	T	215777454	1	4	106	0	1	0	0	0	0	0	0	0	8180	841	29	4		4	KCTD3	1	215777454	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	17580	215777454	33473167	199	102894											
USH2A	7399	broad.mit.edu	37	chr1	216051129	216051129	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttatcttcataaagccaCtgagttcctgaataaatatt	4	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216051129	T	T	216051129	2	4	106	1	0	0	0	0	0	0	0	1	17162	564	20	4		4	USH2A	1	216051129	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	273675	216051129	33199492	200	102895											
USH2A	7399	broad.mit.edu	37	chr1	216143975	216143975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagatactcaccagtgggcCcagagcacaacctttggccg	10	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216143975	A	A	216143975	3	1	106	1	0	0	0	0	1	0	0	0	17162	623	22	2	8807	2	USH2A	1	216143975	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	92846	216143975	33106646	201	102896											
USH2A	7399	broad.mit.edu	37	chr1	216221758	216221758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattatggcctggcaatgcaCtttgtcatcaaattaggttg	9	7	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216221758	A	A	216221758	1	1	106	0	1	0	0	0	0	0	0	0	17162	580	20	3		3	USH2A	1	216221758	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	77783	216221758	33028863	202	102897											
USH2A	7399	broad.mit.edu	37	chr1	216496873	216496873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtctgaggttaacagcaGtctcagttgtatagtactgc	11	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216496873	T	T	216496873	3	4	106	1	0	0	0	0	1	0	0	0	17162	1029	36	3	14389	3	USH2A	1	216496873	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	275115	216496873	32753748	203	102898											
USH2A	7399	broad.mit.edu	37	chr1	216595085	216595085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagttagtcttcaatacCatgaattctatatagccttc	6	8	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216595085	A	A	216595085	1	1	106	0	1	0	0	0	0	0	0	0	17162	609	21	2		2	USH2A	1	216595085	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	98212	216595085	32655536	204	102899											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220406172	220406172	+	Frame_Shift_Del	DEL	C	-	-													gttcattttcttcccatgctCcccaaccatcatcttcccag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220406172	-	-	220406172	7	5	106	1	0	1	0	1	0	0	0	0	13044	855	30	0	4168	0	RAB3GAP2	1	220406172	Frame_Shift_Del	DEL	C	TCGA-44-2656-01A-02D-0969-08	3811087	220406172	28844449	205	102900											
MARK1	4139	broad.mit.edu	37	chr1	220752848	220752848	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacaaaaaacaatagggaaGggaaattttgccaaagtcaa	8	5	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220752848	A	A	220752848	2	1	106	1	0	0	0	0	0	0	0	1	9404	991	35	4		4	MARK1	1	220752848	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	346676	220752848	28497773	206	102901											
ENAH	55740	broad.mit.edu	37	chr1	225699552	225699552	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccttagaagttacaggctCtgaatcttcctaaatataca	7	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225699552	A	A	225699552	4	1	106	1	0	0	0	0	0	1	0	0	5153	922	32	3	367	3	ENAH	1	225699552	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4946704	225699552	23551069	207	102902											
MIXL1	83881	broad.mit.edu	37	chr1	226413314	226413314	+	Frame_Shift_Del	DEL	A	-	-													ccactgtgctcctggaactgAaacgaaatgtctgaagcccc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	226413314	-	-	226413314	7	5	106	1	0	1	0	1	0	0	0	0	9690	246	9	0	506	0	MIXL1	1	226413314	Frame_Shift_Del	DEL	A	TCGA-44-2656-01A-02D-0969-08	713762	226413314	22837307	208	102903											
WNT3A	89780	broad.mit.edu	37	chr1	228248008	228248008	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggaaggttccatgaagCgagtcgggtccccaacccgt	14	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228248008	T	T	228248008	1	4	106	0	1	0	0	0	0	0	0	0	17516	783	27	4		4	WNT3A	1	228248008	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	1834694	228248008	21002613	209	102904											
OBSCN	84033	broad.mit.edu	37	chr1	228464950	228464950	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttaccggtgcgagttcgcGgatcagggagtgtatgtgtg	16	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228464950	C	C	228464950	2	2	106	1	0	0	0	0	0	0	0	1	10907	1103	39	4		4	OBSCN	1	228464950	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	216942	228464950	20785671	210	102905											
OBSCN	84033	broad.mit.edu	37	chr1	228523918	228523918	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggaccacacaagccatctCagcacaggggttggaaactg	11	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228523918	A	A	228523918	4	1	106	1	0	0	0	0	0	1	0	0	10907	838	29	3	16734	3	OBSCN	1	228523918	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	58968	228523918	20726703	211	102906											
ACTA1	58	broad.mit.edu	37	chr1	229568983	229568983	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctccctccccaggaaccTagggacatctcctgccggag	10	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229568983	C	C	229568983	1	2	106	0	1	0	0	0	0	0	0	0	191	1537	53	5		5	ACTA1	1	229568983	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1045065	229568983	19681638	212	102907											
NUP133	55746	broad.mit.edu	37	chr1	229602602	229602602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaagccatatcctcagacCtatagatggaggaaaattta	7	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229602602	A	A	229602602	1	1	106	0	1	0	0	0	0	0	0	0	10849	696	24	2		2	NUP133	1	229602602	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	33619	229602602	19648019	213	102908											
NUP133	55746	broad.mit.edu	37	chr1	229622035	229622035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacgactgtgccactgcaCtctagcctgggtgacagcgt	11	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229622035	A	A	229622035	1	1	106	0	1	0	0	0	0	0	0	0	10849	580	20	3		3	NUP133	1	229622035	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	19433	229622035	19628586	214	102909											
TOMM20	9804	broad.mit.edu	37	chr1	235277265	235277265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatgtaacctgaaaagcCttggcctttgtcaaaattaa	6	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235277265	A	A	235277265	1	1	106	0	1	0	0	0	0	0	0	0	16477	696	24	2		2	TOMM20	1	235277265	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5655230	235277265	13973356	215	102910											
LYST	1130	broad.mit.edu	37	chr1	235973688	235973688	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaattttacgctgtcgtcTgctttttcgaaaaacattta	7	7	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235973688	C	C	235973688	3	2	106	1	0	0	0	0	1	0	0	0	9216	1588	55	5	11171	5	LYST	1	235973688	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	696423	235973688	13276933	216	102911											
NID1	4811	broad.mit.edu	37	chr1	236195859	236195859	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtggttcattactacgtaaGagtggaggtcagtgttctca	12	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236195859	T	T	236195859	3	4	106	1	0	0	0	0	1	0	0	0	10509	942	33	3	2424	3	NID1	1	236195859	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	222171	236195859	13054762	217	102912											
NID1	4811	broad.mit.edu	37	chr1	236201439	236201439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgccattgcccgtatagCcagcgacacagctgcagcag	11	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236201439	A	A	236201439	3	1	106	1	0	0	0	0	1	0	0	0	10509	739	26	3	2557	3	NID1	1	236201439	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	5580	236201439	13049182	218	102913											
MTR	4548	broad.mit.edu	37	chr1	236988761	236988761	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagattgaattttagatttaGagtatttagaaggagaattt	9	0	0	6			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236988761	A	A	236988761	1	1	106	0	1	0	0	0	0	0	0	0	10052	957	33	4		4	MTR	1	236988761	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	787322	236988761	12261860	219	102914											
RYR2	6262	broad.mit.edu	37	chr1	237604835	237604835	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtaattttttatgaatacAcaagcacaagtcaaaaataa	4	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237604835	T	T	237604835	1	4	106	0	1	0	0	0	0	0	0	0	13880	174	6	5		5	RYR2	1	237604835	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	616074	237604835	11645786	220	102915											
RYR2	6262	broad.mit.edu	37	chr1	237729943	237729943	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagacctatgcagtgaaGgccggacggtggtattttga	15	6	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237729943	A	A	237729943	2	1	106	1	0	0	0	0	0	0	0	1	13880	991	35	4		4	RYR2	1	237729943	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	125108	237729943	11520678	221	102916											
RYR2	6262	broad.mit.edu	37	chr1	237893718	237893718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgcagcaatgttggcGtgagcagtcattatataaca	11	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237893718	T	T	237893718	1	4	106	0	1	0	0	0	0	0	0	0	13880	1160	40	3		3	RYR2	1	237893718	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	163775	237893718	11356903	222	102917											
RYR2	6262	broad.mit.edu	37	chr1	237955446	237955446	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaggaaaggagctccccacGagaagttcaagtgaaaatgc	12	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237955446	T	T	237955446	2	4	106	1	0	0	0	0	0	0	0	1	13880	1045	37	3		3	RYR2	1	237955446	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	61728	237955446	11295175	223	102918											
ZP4	57829	broad.mit.edu	37	chr1	238051764	238051764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcacatggcagtctgtcCcgtgctgggatggagtcaca	15	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238051764	A	A	238051764	2	1	106	1	0	0	0	0	0	0	0	1	18347	610	22	2		2	ZP4	1	238051764	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	96318	238051764	11198857	224	102919											
FMN2	56776	broad.mit.edu	37	chr1	240306301	240306301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaaagagagaggcacgGtgagcagcccagccatggcc	15	12	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240306301	T	T	240306301	1	4	106	0	1	0	0	0	0	0	0	0	6008	1276	44	3		3	FMN2	1	240306301	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2254537	240306301	8944320	225	102920											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242162037	242162037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaacaggatcggaaccCcacccccacgccccccagcg	9	20	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242162037	A	A	242162037	1	1	106	0	1	0	0	0	0	0	0	0	9325	638	22	2		2	MAP1LC3C	1	242162037	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1855736	242162037	7088584	226	102921											
SMYD3	64754	broad.mit.edu	37	chr1	246673571	246673571	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctgggccttggccacatgGaagccccaccaggacaggtg	13	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246673571	T	T	246673571	1	4	106	0	1	0	0	0	0	0	0	0	14937	1189	41	3		3	SMYD3	1	246673571	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	4511534	246673571	2577050	227	102922											
NLRP3	114548	broad.mit.edu	37	chr1	247587802	247587802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcatcaccacgagacctGtggccctggagaaactgcag	11	13	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247587802	T	T	247587802	3	4	106	1	0	0	0	0	1	0	0	0	10573	1377	48	3	1067	3	NLRP3	1	247587802	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	914231	247587802	1662819	228	102923											
OR2B11	127623	broad.mit.edu	37	chr1	247614463	247614463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagagaaataaatttgccCtgctcttgggagtagctgga	12	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614463	A	A	247614463	3	1	106	1	0	0	0	0	1	0	0	0	11082	680	24	2	134	2	OR2B11	1	247614463	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	26661	247614463	1636158	229	102924											
OR2C3	81472	broad.mit.edu	37	chr1	247695356	247695356	+	Missense_Mutation	SNP	C	A	A													ccaccatgctggtggtcagaCcccccagccaggaggccaaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247695356	A	A	247695356	3	1	106	1	0	0	0	0	1	0	0	0	11087	507	18	3	508	3	OR2C3	1	247695356	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	80893	247695356	1555265	230	102925	449	2									
OR2C3	81472	broad.mit.edu	37	chr1	247695358	247695358	+	Silent	SNP	C	T	T													accatgctggtggtcagaccCcccagccaggaggccaaagc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695358	T	T	247695358	2	4	106	1	0	0	0	0	0	0	0	1	11087	610	22	4		4	OR2C3	1	247695358	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2	247695358	1555263	231	102926	449	2									
OR2G2	81470	broad.mit.edu	37	chr1	247752128	247752128	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatggcatggctcagtggaaTagccaccaccctggtacagt	11	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247752128	C	C	247752128	3	2	106	1	0	0	0	0	1	0	0	0	11092	1406	49	5	469	5	OR2G2	1	247752128	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	56770	247752128	1498493	232	102927											
OR2G3	81469	broad.mit.edu	37	chr1	247769640	247769640	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttacagtggtgattatattCtatggcaccataatctacgt	7	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247769640	A	A	247769640	3	1	106	1	0	0	0	0	1	0	0	0	11093	912	32	3	755	3	OR2G3	1	247769640	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	17512	247769640	1480981	233	102928											
OR14A16	284532	broad.mit.edu	37	chr1	247978554	247978554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggataaggagaaggtgcCagctgtgtgcatcacagcaa	14	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978554	A	A	247978554	3	1	106	1	0	0	0	0	1	0	0	0	11039	594	21	2	455	2	OR14A16	1	247978554	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	208914	247978554	1272067	234	102929											
OR2W3	343171	broad.mit.edu	37	chr1	248059311	248059311	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcatgaaccccaggctctgCcggggcttggtgtcagtgac	13	12	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248059311	G	G	248059311	3	3	106	1	0	0	0	0	1	0	0	0	11127	747	26	4	425	4	OR2W3	1	248059311	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	80757	248059311	1191310	235	102930											
OR2W3	343171	broad.mit.edu	37	chr1	248059622	248059622	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggcacctgcggctcccatcTcactgtggtctcccttttct	8	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059622	A	A	248059622	3	1	106	1	0	0	0	0	1	0	0	0	11127	1551	54	5	736	5	OR2W3	1	248059622	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	311	248059622	1190999	236	102931											
OR2T8	343172	broad.mit.edu	37	chr1	248084416	248084416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgatggttctgagtatcGttttgacctccctgtttggc	10	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248084416	T	T	248084416	3	4	106	1	0	0	0	0	1	0	0	0	11124	1145	40	3	99	3	OR2T8	1	248084416	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	24794	248084416	1166205	237	102932											
OR2L13	284521	broad.mit.edu	37	chr1	248099995	248099995	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctggtgggccatgtgccaGacatgtgggaggggaatggc	19	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248099995	T	T	248099995	1	4	106	0	1	0	0	0	0	0	0	0	11100	957	33	3		3	OR2L13	1	248099995	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	15579	248099995	1150626	238	102933											
OR2L13	284521	broad.mit.edu	37	chr1	248185308	248185308	+	Intron	DEL	C	-	-													attggggctgttcccaccatCaaaaattggccttttcctct							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248185308	-	-	248185308	6	5	106	0	1	1	0	1	0	0	0	0	11100	841	29	0		0	OR2L13	1	248185308	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	85313	248185308	1065313	239	102934											
OR2L3	391192	broad.mit.edu	37	chr1	248224532	248224532	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgatgtcccagcaatGgtgactctggcctgcatgga	12	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224532	A	A	248224532	3	1	106	1	0	0	0	0	1	0	0	0	11102	1348	47	4	551	4	OR2L3	1	248224532	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	39224	248224532	1026089	240	102935											
OR2M3	127062	broad.mit.edu	37	chr1	248366271	248366271	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtattgatcacccaactAcagaagttaccacaatcaca	5	12	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248366271	C	C	248366271	1	2	106	0	1	0	0	0	0	0	0	0	11105	406	14	5		5	OR2M3	1	248366271	5'Flank	SNP	A	TCGA-44-2656-01A-02D-0969-08	141739	248366271	884350	241	102936											
OR2M7	391196	broad.mit.edu	37	chr1	248487614	248487614	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatggacttgctgccagacAagtagttgaaggccatcttg	11	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487614	T	T	248487614	4	4	106	1	0	0	0	0	0	1	0	0	11108	131	5	5	684	5	OR2M7	1	248487614	Nonsense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	121343	248487614	763007	242	102937											
OR2M7	391196	broad.mit.edu	37	chr1	248487866	248487866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggtctgattctcccatGccatgatgaatatgcctgtt	9	9	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487866	T	T	248487866	3	4	106	1	0	0	0	0	1	0	0	0	11108	1319	46	3	936	3	OR2M7	1	248487866	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	252	248487866	762755	243	102938											
OR2T6	254879	broad.mit.edu	37	chr1	248551410	248551410	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccattaccatgagtctcccGttctgtgcctctcaccaaat	5	16	3	1	rs80259157	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248551410	T	T	248551410	2	4	106	1	0	0	0	0	0	0	0	1	11123	1132	40	3		3	OR2T6	1	248551410	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	63544	248551410	699211	244	102939											
OR2T34	127068	broad.mit.edu	37	chr1	248737445	248737445	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatgaggatgcagcacaggTacgtgagcatcttatagagg	14	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248737445	A	A	248737445	3	1	106	1	0	0	0	0	1	0	0	0	11119	1638	57	5	346	5	OR2T34	1	248737445	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	186035	248737445	513176	245	102940											
OR2T10	127069	broad.mit.edu	37	chr1	248756948	248756948	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagtatcaatgtaatattcCaagacacagccatcaaaaat	5	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248756948	G	G	248756948	3	3	106	1	0	0	0	0	1	0	0	0	11111	595	21	4	819	4	OR2T10	1	248756948	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	19503	248756948	493673	246	102941											
TPO	7173	broad.mit.edu	37	chr2	1544403	1544403	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatccacactgcccatctcgGagacaggcggaggaactccc	10	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1544403	A	A	1544403	3	1	106	1	0	0	0	0	1	0	0	0	16534	1175	41	4	2714	4	TPO	2	1544403	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08		1544403	241654970	247	102942											
TTC15	51112	broad.mit.edu	37	chr2	3447501	3447501	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtgccaagtatgaatgCgtgctcagttatggcaaaca	11	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3447501	T	T	3447501	1	4	106	0	1	0	0	0	0	0	0	0	16808	783	27	4		4	TTC15	2	3447501	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1903098	3447501	239751872	248	102943											
RNF144A	9781	broad.mit.edu	37	chr2	7170389	7170394	+	Intron	DEL	TGTGTG	-	-													ggttgatctcagagagagacTgtgtgtgtgtgtgtgtgtgt					rs72180357		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7170394	-	-	7170389	6	5	106	0	1	1	0	1	0	0	0	0	13556	1595	55	0		0	RNF144A	2	7170389	Intron	DEL	TGTGTG	TCGA-44-2656-01A-02D-0969-08	3722888	7170389	236028984	249	102944											
GREB1	9687	broad.mit.edu	37	chr2	11736151	11736151	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcatgactccaggcctcggGacagtacctgacactaactg	9	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11736151	T	T	11736151	1	4	106	0	1	0	0	0	0	0	0	0	6826	1189	41	3		3	GREB1	2	11736151	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4565762	11736151	231463222	250	102945											
TRIB2	28951	broad.mit.edu	37	chr2	12880889	12880890	+	Missense_Mutation	DNP	TG	AT	AT													gctggtgccggacgtcaacaTggaagagaacttggaccctt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	12880890	AT	AT	12880889	3	1	106	1	0	0	0	0	1	0	0	0	16607	1464	51	5	1011	5	TRIB2	2	12880889	Missense_Mutation	DNP	TG	TCGA-44-2656-01A-02D-0969-08	1144738	12880889	230318484	251	102946											
NBAS	51594	broad.mit.edu	37	chr2	15417226	15417226	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatttctagtgtggacaaaCtgaaattaagagccaaagga	9	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15417226	A	A	15417226	5	1	106	1	0	0	0	0	0	0	1	0	10280	579	20	3	2017	3	NBAS	2	15417226	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	2536337	15417226	227782147	252	102947											
NBAS	51594	broad.mit.edu	37	chr2	15468435	15468435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaccaccacatttttgcCcctaaaaagaaaaaaagtac	4	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15468435	A	A	15468435	3	1	106	1	0	0	0	0	1	0	0	0	10280	637	22	2	2830	2	NBAS	2	15468435	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	51209	15468435	227730938	253	102948											
NBAS	51594	broad.mit.edu	37	chr2	15701451	15701451	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgccgaggactcaggcagcGgaggagtgtctctacggaat	15	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15701451	A	A	15701451	1	1	106	0	1	0	0	0	0	0	0	0	10280	1131	39	4		4	NBAS	2	15701451	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	233016	15701451	227497922	254	102949											
VSNL1	7447	broad.mit.edu	37	chr2	17830660	17830660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccgacacctgactgcgCgtgttctcctttgcagttct	8	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17830660	A	A	17830660	1	1	106	0	1	0	0	0	0	0	0	0	17354	783	27	3		3	VSNL1	2	17830660	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2129209	17830660	225368713	255	102950											
VSNL1	7447	broad.mit.edu	37	chr2	17836616	17836616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaagaagctgcaaagagCgacccttccattgtattact	7	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17836616	A	A	17836616	3	1	106	1	0	0	0	0	1	0	0	0	17354	767	27	3	541	3	VSNL1	2	17836616	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	5956	17836616	225362757	256	102951											
WDR35	57539	broad.mit.edu	37	chr2	20133236	20133237	+	Frame_Shift_Del	DEL	CA	-	-													aaatgcagtcactgcttgttCacacattccaactctgacaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20133237	-	-	20133236	7	5	106	1	0	1	0	1	0	0	0	0	17416	835	29	0	952	0	WDR35	2	20133236	Frame_Shift_Del	DEL	CA	TCGA-44-2656-01A-02D-0969-08	2296620	20133236	223066137	257	102952											
PUM2	23369	broad.mit.edu	37	chr2	20482749	20482749	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctgagcctatagcagcaCccaaagagttaccacttcca	9	13	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20482749	T	T	20482749	3	4	106	1	0	0	0	0	1	0	0	0	12934	507	18	4	1555	4	PUM2	2	20482749	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	349513	20482749	222716624	258	102953											
APOB	338	broad.mit.edu	37	chr2	21227120	21227120	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actcgctcttgggggcgtgtCactcattaggtggtatttac	12	9	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21227120	A	A	21227120	1	1	106	0	1	0	0	0	0	0	0	0	787	841	29	3		3	APOB	2	21227120	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	744371	21227120	221972253	259	102954											
APOB	338	broad.mit.edu	37	chr2	21239499	21239499	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgattatatttgaatgtcatGgtagcctcagtctgcttcgc	9	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21239499	T	T	21239499	2	4	106	1	0	0	0	0	0	0	0	1	787	1335	47	2		2	APOB	2	21239499	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	12379	21239499	221959874	260	102955											
APOB	338	broad.mit.edu	37	chr2	21245902	21245902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggagggttttgccaccaGttcagcctgcatctataagt	10	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21245902	T	T	21245902	3	4	106	1	0	0	0	0	1	0	0	0	787	1020	36	3	11122	3	APOB	2	21245902	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	6403	21245902	221953471	261	102956											
ITSN2	50618	broad.mit.edu	37	chr2	24426444	24426444	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagagcgcagtctctcattCtccagccccagccttgtggg	11	14	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24426444	A	A	24426444	1	1	106	0	1	0	0	0	0	0	0	0	7997	928	32	3		3	ITSN2	2	24426444	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	3180542	24426444	218772929	262	102957											
DTNB	1838	broad.mit.edu	37	chr2	25606864	25606864	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggaaactctagctaaCagctcctggctgcaggcctc	12	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25606864	T	T	25606864	1	4	106	0	1	0	0	0	0	0	0	0	4829	493	17	4		4	DTNB	2	25606864	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1180420	25606864	217592509	263	102958											
OTOF	9381	broad.mit.edu	37	chr2	26690191	26690191	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactgcgcccccctcttccCgcccccacacaccctagaag	5	23	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26690191	T	T	26690191	1	4	106	0	1	0	0	0	0	0	0	0	11397	667	23	4		4	OTOF	2	26690191	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1083327	26690191	216509182	264	102959											
OTOF	9381	broad.mit.edu	37	chr2	26696880	26696880	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactcggtacttgctgagCacgggccggatgcccatggg	14	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26696880	A	A	26696880	2	1	106	1	0	0	0	0	0	0	0	1	11397	697	25	3		3	OTOF	2	26696880	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	6689	26696880	216502493	265	102960											
CIB4	130106	broad.mit.edu	37	chr2	26818175	26818175	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcagatacggtctctgAaagggttgacctgtgggcga	14	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26818175	T	T	26818175	3	4	106	1	0	0	0	0	1	0	0	0	3454	246	9	5	376	5	CIB4	2	26818175	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	121295	26818175	216381198	266	102961											
SLC30A3	7781	broad.mit.edu	37	chr2	27481082	27481082	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctggacgggtggagagcCagagggagaagaggctgccc	20	8	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27481082	T	T	27481082	4	4	106	1	0	0	0	0	0	1	0	0	14670	595	21	4	819	4	SLC30A3	2	27481082	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	662907	27481082	215718291	267	102962											
BRE	9577	broad.mit.edu	37	chr2	28464261	28464261	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcagtcactttggcacGtaagttctgccctgtttgaa	8	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28464261	T	T	28464261	5	4	106	1	0	0	0	0	0	0	1	0	1518	1159	40	3	882	3	BRE	2	28464261	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	983179	28464261	214735112	268	102963											
PLB1	151056	broad.mit.edu	37	chr2	28815741	28815741	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgccagttatttgatttgCggccactttctcaaacggat	8	10	1	1	rs140245093	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28815741	T	T	28815741	1	4	106	0	1	0	0	0	0	0	0	0	12119	783	27	4		4	PLB1	2	28815741	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	351480	28815741	214383632	269	102964											
PLB1	151056	broad.mit.edu	37	chr2	28821733	28821733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcaaaggggcacttagcCacttgtgaggctcaggctgc	14	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28821733	A	A	28821733	1	1	106	0	1	0	0	0	0	0	0	0	12119	609	21	2		2	PLB1	2	28821733	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5992	28821733	214377640	270	102965											
PLB1	151056	broad.mit.edu	37	chr2	28855858	28855858	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgaggactgttttcacttCtcagaccgcgggcatgccga	11	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28855858	A	A	28855858	3	1	106	1	0	0	0	0	1	0	0	0	12119	912	32	3	4305	3	PLB1	2	28855858	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	34125	28855858	214343515	271	102966											
PLB1	151056	broad.mit.edu	37	chr2	28855888	28855888	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcatgccgagatggccatCgcactctggaacaacatggt	13	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28855888	T	T	28855888	2	4	106	1	0	0	0	0	0	0	0	1	12119	874	31	4		4	PLB1	2	28855888	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	30	28855888	214343485	272	102967											
FAM179A	165186	broad.mit.edu	37	chr2	29255791	29255791	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttatcttgctctctctcCtgtggcagattttatggccg	8	11	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29255791	T	T	29255791	1	4	106	0	1	0	0	0	0	0	0	0	5550	696	24	4		4	FAM179A	2	29255791	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	399903	29255791	213943582	273	102968											
ALK	238	broad.mit.edu	37	chr2	29551271	29551271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtggaagtcacaggcCtgcccaagctggaggactgt	14	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29551271	A	A	29551271	3	1	106	1	0	0	0	0	1	0	0	0	525	680	24	2	3599	2	ALK	2	29551271	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	295480	29551271	213648102	274	102969											
CAPN13	92291	broad.mit.edu	37	chr2	30966564	30966564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaagataacattacaggCtctataaatggagacagtgc	8	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30966564	A	A	30966564	1	1	106	0	1	0	0	0	0	0	0	0	2652	812	28	3		3	CAPN13	2	30966564	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1415293	30966564	212232809	275	102970											
GALNT14	79623	broad.mit.edu	37	chr2	31135331	31135331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccaagggtcccagtaggCaatgatcatcaaggttacct	10	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31135331	A	A	31135331	1	1	106	0	1	0	0	0	0	0	0	0	6274	725	25	3		3	GALNT14	2	31135331	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	168767	31135331	212064042	276	102971											
XDH	7498	broad.mit.edu	37	chr2	31605846	31605846	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccatcctacgggcctcgcTtgcttctgagagcgactcac	9	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31605846	A	A	31605846	1	1	106	0	1	0	0	0	0	0	0	0	17553	1624	56	5		5	XDH	2	31605846	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	470515	31605846	211593527	277	102972											
NLRC4	58484	broad.mit.edu	37	chr2	32477681	32477681	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catacaaataggtcatctgtGatttgctttataacagtcat	6	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32477681	T	T	32477681	2	4	106	1	0	0	0	0	0	0	0	1	10564	1280	45	3		3	NLRC4	2	32477681	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	871835	32477681	210721692	278	102973											
BIRC6	57448	broad.mit.edu	37	chr2	32678942	32678950	+	In_Frame_Del	DEL	AAGTTGAAC	-	-													atctctcactggacttttggAagttgaacctctgcacttta							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32678950	-	-	32678942	7	5	106	1	0	1	0	1	0	0	0	0	1444	246	9	0	4775	0	BIRC6	2	32678942	In_Frame_Del	DEL	AAGTTGAAC	TCGA-44-2656-01A-02D-0969-08	201261	32678942	210520431	279	102974											
LTBP1	4052	broad.mit.edu	37	chr2	33174089	33174089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgggggcatctcacaaGggccacttgaaagggctcgg	14	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33174089	T	T	33174089	1	4	106	0	1	0	0	0	0	0	0	0	9160	1015	35	2		2	LTBP1	2	33174089	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	495147	33174089	210025284	280	102975											
LTBP1	4052	broad.mit.edu	37	chr2	33359928	33359928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaagtgacctgcaccaagGgcagctgtcagaacagctgt	12	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33359928	T	T	33359928	3	4	106	1	0	0	0	0	1	0	0	0	9160	1232	43	2	1175	2	LTBP1	2	33359928	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	185839	33359928	209839445	281	102976											
LTBP1	4052	broad.mit.edu	37	chr2	33442569	33442569	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcagtgctctggggctGggcatcctgcactcaattaa	12	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33442569	T	T	33442569	1	4	106	0	1	0	0	0	0	0	0	0	9160	1363	47	2		2	LTBP1	2	33442569	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	82641	33442569	209756804	282	102977											
CDKL4	344387	broad.mit.edu	37	chr2	39456811	39456811	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacaaccaatttgtccacaTgccaaaggtttatattcatc	4	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39456811	A	A	39456811	1	1	106	0	1	0	0	0	0	0	0	0	3186	1479	51	5		5	CDKL4	2	39456811	5'Flank	SNP	T	TCGA-44-2656-01A-02D-0969-08	6014242	39456811	203742562	283	102978											
HAAO	23498	broad.mit.edu	37	chr2	42996759	42996759	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgagtgtgtgtgtgaAagagagagagagagaggcag	20	1	0	6	rs144715187	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42996759	G	G	42996759	1	3	106	0	1	0	0	0	0	0	0	0	7003	29	1	5		5	HAAO	2	42996759	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3539948	42996759	200202614	284	102979											
PLEKHH2	130271	broad.mit.edu	37	chr2	43937477	43937477	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctacaaatctccggtgagtgGaaagtgttttctgtttagaa	10	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43937477	T	T	43937477	1	4	106	0	1	0	0	0	0	0	0	0	12172	1189	41	3		3	PLEKHH2	2	43937477	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	940718	43937477	199261896	285	102980											
LRPPRC	10128	broad.mit.edu	37	chr2	44145419	44145419	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtacgtcaaacggaacttcCtggttaccctctctaaggat	9	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44145419	G	G	44145419	3	3	106	1	0	0	0	0	1	0	0	0	9052	680	24	4	1213	4	LRPPRC	2	44145419	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	207942	44145419	199053954	286	102981											
MSH2	4436	broad.mit.edu	37	chr2	47690447	47690447	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcccaacaggcccttgtatGatgtcatttaaacaagccct	7	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47690447	T	T	47690447	1	4	106	0	1	0	0	0	0	0	0	0	9964	1305	45	3		3	MSH2	2	47690447	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3545028	47690447	195508926	287	102982											
FSHR	2492	broad.mit.edu	37	chr2	49210404	49210404	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagggcagacagcacaggtTagtggcataaagaaaatgcc	12	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49210404	G	G	49210404	1	3	106	0	1	0	0	0	0	0	0	0	6133	1769	61	5		5	FSHR	2	49210404	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1519957	49210404	193988969	288	102983											
SPTBN1	6711	broad.mit.edu	37	chr2	54893182	54893182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagaagctgtctgcgaaGtggcccttgattacaaaaag	11	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54893182	T	T	54893182	3	4	106	1	0	0	0	0	1	0	0	0	15237	1029	36	3	7120	3	SPTBN1	2	54893182	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	5682778	54893182	188306191	289	102984											
FAM161A	84140	broad.mit.edu	37	chr2	62083841	62083841	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggcagaatggctcctgcAaagaagggtggcaagaagat	14	8	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62083841	G	G	62083841	1	3	106	0	1	0	0	0	0	0	0	0	5518	145	5	5		5	FAM161A	2	62083841	5'Flank	SNP	A	TCGA-44-2656-01A-02D-0969-08	7190659	62083841	181115532	290	102985											
TMEM17	200728	broad.mit.edu	37	chr2	62728639	62728640	+	Intron	INS	-	AA	AA													aacctgcaatgacacatatcINSaagagtaataaaaatcagta							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	62728640	AA	AA	62728639	6	5	106	0	1	1	1	0	0	0	0	0	16208	841	29	0		0	TMEM17	2	62728639	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	644798	62728639	180470734	291	102986											
C2orf86	51057	broad.mit.edu	37	chr2	63349301	63349301	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatagtgaaacaaaataaaaTagtttaaaatgtactgcaca	5	4	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63349301	C	C	63349301	1	2	106	0	1	0	0	0	0	0	0	0	2223	1421	49	5		5	C2orf86	2	63349301	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	620662	63349301	179850072	292	102987											
PELI1	57162	broad.mit.edu	37	chr2	64335371	64335371	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcaaatggagaaacctTaccctaagacaatgagttca	7	9	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64335371	A	A	64335371	1	1	106	0	1	0	0	0	0	0	0	0	11815	1769	61	5		5	PELI1	2	64335371	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	986070	64335371	178864002	293	102988											
SERTAD2	9792	broad.mit.edu	37	chr2	64863699	64863699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgaaggccggcggggCctctcggtagctgtcgctgg	19	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64863699	A	A	64863699	3	1	106	1	0	0	0	0	1	0	0	0	14234	739	26	3	641	3	SERTAD2	2	64863699	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	528328	64863699	178335674	294	102989											
ARHGAP25	9938	broad.mit.edu	37	chr2	69049651	69049651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttcagggtgccaacagCagcaaaatggagatctttaa	10	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69049651	A	A	69049651	3	1	106	1	0	0	0	0	1	0	0	0	876	709	25	3	1458	3	ARHGAP25	2	69049651	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4185952	69049651	174149722	295	102990											
CLEC4F	165530	broad.mit.edu	37	chr2	71047032	71047032	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagtccacctctgcagggGagaaggcagtgtccaaggtg	15	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71047032	T	T	71047032	1	4	106	0	1	0	0	0	0	0	0	0	3548	1189	41	3		3	CLEC4F	2	71047032	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1997381	71047032	172152341	296	102991											
VAX2	25806	broad.mit.edu	37	chr2	71160340	71160340	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagctaacacttaagactcCcaccctgtgacactgagtcc	6	14	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71160340	T	T	71160340	1	4	106	0	1	0	0	0	0	0	0	0	17262	638	22	4		4	VAX2	2	71160340	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	113308	71160340	172039033	297	102992											
DYSF	8291	broad.mit.edu	37	chr2	71730502	71730502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaggcattgccaggtggCttcctctttgggccttgcca	11	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71730502	T	T	71730502	1	4	106	0	1	0	0	0	0	0	0	0	4899	812	28	4		4	DYSF	2	71730502	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	570162	71730502	171468871	298	102993											
DYSF	8291	broad.mit.edu	37	chr2	71817456	71817456	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagagtcagagactgtggGctgagatctgggaatggaga	18	4	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71817456	A	A	71817456	1	1	106	0	1	0	0	0	0	0	0	0	4899	1218	42	4		4	DYSF	2	71817456	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	86954	71817456	171381917	299	102994											
NAT8	9027	broad.mit.edu	37	chr2	73868896	73868896	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcaggaacagggagacCtgctcaagggtgtgtctttc	13	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73868896	G	G	73868896	1	3	106	0	1	0	0	0	0	0	0	0	10273	696	24	4		4	NAT8	2	73868896	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2051440	73868896	169330477	300	102995											
C2orf78	388960	broad.mit.edu	37	chr2	74043181	74043181	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatgaaacggaagaaaaatCaacctgagcttagccaaaag	8	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74043181	A	A	74043181	3	1	106	1	0	0	0	0	1	0	0	0	2217	827	29	3	1841	3	C2orf78	2	74043181	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	174285	74043181	169156192	301	102996											
LRRTM4	80059	broad.mit.edu	37	chr2	77745831	77745831	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacgtcaggtttgaagatGgtaggtctagggataatcag	15	4	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745831	A	A	77745831	2	1	106	1	0	0	0	0	0	0	0	1	9129	1335	47	4		4	LRRTM4	2	77745831	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	3702650	77745831	165453542	302	102997											
REG3G	130120	broad.mit.edu	37	chr2	79253988	79254003	+	Intron	DEL	TAGGGGAAAGTCCATG	-	-													agatgtggggttggaggtgaTaggggaaagtccatgcaggt					rs117454068	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79254003	-	-	79253988	6	5	106	0	1	1	0	1	0	0	0	0	13321	1421	49	0		0	REG3G	2	79253988	Intron	DEL	TAGGGGAAAGTCCATG	TCGA-44-2656-01A-02D-0969-08	1508157	79253988	163945385	303	102998											
REG3G	130120	broad.mit.edu	37	chr2	79254918	79254918	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttcttcacctggctgccTcctcttctctatagggctct	6	14	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79254918	A	A	79254918	1	1	106	0	1	0	0	0	0	0	0	0	13321	1566	54	5		5	REG3G	2	79254918	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	930	79254918	163944455	304	102999											
REG3A	5068	broad.mit.edu	37	chr2	79384784	79384784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtaattcatcacatcaCtgctactccactcccaacct	2	16	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384784	A	A	79384784	3	1	106	1	0	0	0	0	1	0	0	0	13320	565	20	3	161	3	REG3A	2	79384784	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	129866	79384784	163814589	305	103000											
CTNNA2	1496	broad.mit.edu	37	chr2	79422961	79422961	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagctgaatcaatacatatCactcaatgaaagttctagac	7	8	4	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79422961	A	A	79422961	1	1	106	0	1	0	0	0	0	0	0	0	4047	841	29	3		3	CTNNA2	2	79422961	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	38177	79422961	163776412	306	103001											
LRRTM1	347730	broad.mit.edu	37	chr2	80530120	80530120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcggcacggtctcgaaCacatggggctccatgtactc	13	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80530120	A	A	80530120	2	1	106	1	0	0	0	0	0	0	0	1	9126	465	17	3		3	LRRTM1	2	80530120	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1107159	80530120	162669253	307	103002											
CTNNA2	1496	broad.mit.edu	37	chr2	80772075	80772075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactttccctttgccccaaCctaatattcactaaaatcct	1	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80772075	A	A	80772075	1	1	106	0	1	0	0	0	0	0	0	0	4047	522	18	3		3	CTNNA2	2	80772075	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	241955	80772075	162427298	308	103003											
CTNNA2	1496	broad.mit.edu	37	chr2	80816575	80816575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtactggccaagcagatGtgtatgatcatgatggaaat	11	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80816575	T	T	80816575	3	4	106	1	0	0	0	0	1	0	0	0	4047	1377	48	3	2000	3	CTNNA2	2	80816575	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	44500	80816575	162382798	309	103004											
CAPG	822	broad.mit.edu	37	chr2	85625790	85625790	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctccctgctgccgggtccCagggcaggcttggggggccc	16	17	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85625790	G	G	85625790	1	3	106	0	1	0	0	0	0	0	0	0	2647	609	21	4		4	CAPG	2	85625790	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4809215	85625790	157573583	310	103005											
KDM3A	55818	broad.mit.edu	37	chr2	86678331	86678331	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagaccttttgaagcctAtacaggtaaaacatagaaac	6	8	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86678331	G	G	86678331	3	3	106	1	0	0	0	0	1	0	0	0	8196	449	16	5	458	5	KDM3A	2	86678331	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1052541	86678331	156521042	311	103006											
KDM3A	55818	broad.mit.edu	37	chr2	86718115	86718115	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcatcaagagtatggagttCaaggctgggctattgtacag	12	6	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86718115	T	T	86718115	4	4	106	1	0	0	0	0	0	1	0	0	8196	827	29	4	3775	4	KDM3A	2	86718115	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	39784	86718115	156481258	312	103007											
FABP1	2168	broad.mit.edu	37	chr2	88422658	88422658	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaattatgaagtgttcatCtgatgttgtattgtaaaaaa	8	2	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88422658	T	T	88422658	1	4	106	0	1	0	0	0	0	0	0	0	5401	928	32	4		4	FABP1	2	88422658	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1704543	88422658	154776715	313	103008											
PROM2	150696	broad.mit.edu	37	chr2	95945675	95945675	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaatctgggcatctggGgcctgtctgccagggacgac	14	13	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95945675	T	T	95945675	3	4	106	1	0	0	0	0	1	0	0	0	12662	1232	43	2	1399	2	PROM2	2	95945675	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	7523017	95945675	147253698	314	103009											
ASTL	431705	broad.mit.edu	37	chr2	96801117	96801117	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgatgtccccctcgatgagGaagctgctctctggggtttc	12	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96801117	C	C	96801117	3	2	106	1	0	0	0	0	1	0	0	0	1067	1165	41	4	1106	4	ASTL	2	96801117	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	855442	96801117	146398256	315	103010											
STARD7	56910	broad.mit.edu	37	chr2	96858109	96858109	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggatgaggtaaaactcacctCatcaaatgacttgtggggac	11	8	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96858109	G	G	96858109	3	3	106	1	0	0	0	0	1	0	0	0	15380	835	29	4	283	4	STARD7	2	96858109	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	56992	96858109	146341264	316	103011											
SNRNP200	23020	broad.mit.edu	37	chr2	96970436	96970436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaatagtatccccttggCactcacttggctcttctttc	5	12	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96970436	A	A	96970436	1	1	106	0	1	0	0	0	0	0	0	0	14966	725	25	3		3	SNRNP200	2	96970436	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	112327	96970436	146228937	317	103012											
NCAPH	23397	broad.mit.edu	37	chr2	97008585	97008585	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccgaaccaaccaactttaAagtaagaaggatgtccactt	6	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97008585	G	G	97008585	3	3	106	1	0	0	0	0	1	0	0	0	10304	28	1	5	469	5	NCAPH	2	97008585	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	38149	97008585	146190788	318	103013											
MRPL30	51263	broad.mit.edu	37	chr2	99804653	99804653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttagactgtgacaaaagGtgtggagtctcttatttgta	10	4	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99804653	T	T	99804653	3	4	106	1	0	0	0	0	1	0	0	0	9888	1261	44	3	71	3	MRPL30	2	99804653	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2796068	99804653	143394720	319	103014											
SLC9A4	389015	broad.mit.edu	37	chr2	103090058	103090058	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattagaaagtgtctacataCagagctcaataacacactcg	7	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103090058	A	A	103090058	1	1	106	0	1	0	0	0	0	0	0	0	14830	493	17	3		3	SLC9A4	2	103090058	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	3285405	103090058	140109315	320	103015											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105924803	105924803	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaagaggaaaactaatttTagaggaacaaggaagaagca	11	3	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105924803	C	C	105924803	1	2	106	0	1	0	0	0	0	0	0	0	15947	1769	61	5		5	TGFBRAP1	2	105924803	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2834745	105924803	137274570	321	103016											
SLC5A7	60482	broad.mit.edu	37	chr2	108604640	108604640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtggaaggactgatagCtatcatcgtgttctaccttc	9	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108604640	A	A	108604640	3	1	106	1	0	0	0	0	1	0	0	0	14784	797	28	3	31	3	SLC5A7	2	108604640	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2679837	108604640	134594733	322	103017											
ZC3H6	376940	broad.mit.edu	37	chr2	113089158	113089158	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgaagacttacttccagtacCtttacctaaacctgatccag	5	13	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113089158	G	G	113089158	3	3	106	1	0	0	0	0	1	0	0	0	17697	681	24	4	2709	4	ZC3H6	2	113089158	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4484518	113089158	130110215	323	103018											
FOXD4L1	200350	broad.mit.edu	37	chr2	114257955	114257955	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcagcagcatcaggaggAggactgcgccaacggctgcg	15	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114257955	T	T	114257955	2	4	106	1	0	0	0	0	0	0	0	1	6058	291	11	5		5	FOXD4L1	2	114257955	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	1168797	114257955	128941418	324	103019											
DPP10	57628	broad.mit.edu	37	chr2	116283454	116283454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtttttaaatataactgGtttttttttctttttctagg	6	3	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116283454	T	T	116283454	1	4	106	0	1	0	0	0	0	0	0	0	4767	1276	44	3		3	DPP10	2	116283454	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2025499	116283454	126915919	325	103020											
CLASP1	23332	broad.mit.edu	37	chr2	122106236	122106236	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagagcaccttgatgcacTgctccgggtggatggaactg	15	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122106236	A	A	122106236	3	1	106	1	0	0	0	0	1	0	0	0	3485	1580	55	5	363	5	CLASP1	2	122106236	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	5822782	122106236	121093137	326	103021											
CNTNAP5	129684	broad.mit.edu	37	chr2	125555897	125555897	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttctgctctgcaagaatGgtgagtgtgatggcatgata	13	5	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125555897	A	A	125555897	3	1	106	1	0	0	0	0	1	0	0	0	3682	1362	47	4	3288	4	CNTNAP5	2	125555897	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3449661	125555897	117643476	327	103022											
PROC	5624	broad.mit.edu	37	chr2	128183674	128183674	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctcagtgaagttcccttgTgggaggccctggaagcggat	14	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128183674	A	A	128183674	4	1	106	1	0	0	0	0	0	1	0	0	12651	1702	59	5	571	5	PROC	2	128183674	Nonsense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	2627777	128183674	115015699	328	103023											
SAP130	79595	broad.mit.edu	37	chr2	128757524	128757524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaagttaagagaattttTctagcccgttgtttttctct	7	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128757524	A	A	128757524	1	1	106	0	1	0	0	0	0	0	0	0	13942	1798	62	5		5	SAP130	2	128757524	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	573850	128757524	114441849	329	103024											
PLEKHB2	55041	broad.mit.edu	37	chr2	131935720	131935720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccaaatctgctattaaaGggttctcgagaatttcttca	6	9	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131935720	T	T	131935720	1	4	106	0	1	0	0	0	0	0	0	0	12160	1015	35	2		2	PLEKHB2	2	131935720	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3178196	131935720	111263653	330	103025											
PLEKHB2	55041	broad.mit.edu	37	chr2	132066684	132066684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaatgtcactgcatatGggagattgaggccccaaagt	12	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132066684	T	T	132066684	1	4	106	0	1	0	0	0	0	0	0	0	12160	1363	47	2		2	PLEKHB2	2	132066684	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	130964	132066684	111132689	331	103026											
GPR39	2863	broad.mit.edu	37	chr2	133174584	133174584	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaagggaagttgagaaagTctttggacctggtagcctgg	15	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133174584	A	A	133174584	1	1	106	0	1	0	0	0	0	0	0	0	6758	1682	58	5		5	GPR39	2	133174584	5'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	1107900	133174584	110024789	332	103027											
R3HDM1	23518	broad.mit.edu	37	chr2	136393555	136393555	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agataactctagctttgacaAagatgataaccaggtaatct	7	7	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136393555	T	T	136393555	3	4	106	1	0	0	0	0	1	0	0	0	12995	14	1	5	824	5	R3HDM1	2	136393555	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	3218971	136393555	106805818	333	103028											
NEB	4703	broad.mit.edu	37	chr2	152512820	152512820	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcatgtcggcaggggtGtggtagctggtctttgtgtt	17	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152512820	A	A	152512820	2	1	106	1	0	0	0	0	0	0	0	1	10397	1368	48	4		4	NEB	2	152512820	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	16119265	152512820	90686553	334	103029											
CACNB4	785	broad.mit.edu	37	chr2	152727146	152727146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaaagatgattcgacaCgcgtgacaaggtgaggttga	13	6	0	6			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152727146	A	A	152727146	1	1	106	0	1	0	0	0	0	0	0	0	2581	551	19	3		3	CACNB4	2	152727146	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	214326	152727146	90472227	335	103030											
PKP4	8502	broad.mit.edu	37	chr2	159518087	159518087	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcaggaggccactctccAgatcaaagggcaagtctcca	9	14	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159518087	T	T	159518087	1	4	106	0	1	0	0	0	0	0	0	0	12082	203	7	5		5	PKP4	2	159518087	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	6790941	159518087	83681286	336	103031											
BAZ2B	29994	broad.mit.edu	37	chr2	160182034	160182034	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttttacttatatattttcTtaacatttatgctttacatt	1	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160182034	A	A	160182034	1	1	106	0	1	0	0	0	0	0	0	0	1337	1624	56	5		5	BAZ2B	2	160182034	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	663947	160182034	83017339	337	103032											
SCN3A	6328	broad.mit.edu	37	chr2	166025352	166025352	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taaagtagattatagttaagGaataaatgttagtaggttac	9	1	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166025352	C	C	166025352	1	2	106	0	1	0	0	0	0	0	0	0	14031	1189	41	4		4	SCN3A	2	166025352	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5843318	166025352	77174021	338	103033											
SCN1A	6323	broad.mit.edu	37	chr2	166896013	166896013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaagcgtcacaataaaacCgtcaaagatattccagcctt	6	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166896013	A	A	166896013	3	1	106	1	0	0	0	0	1	0	0	0	14027	652	23	1	3572	1	SCN1A	2	166896013	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	870661	166896013	76303360	339	103034											
SCN9A	6335	broad.mit.edu	37	chr2	167133545	167133545	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacaataaggcacatagctTgaccagcgacctccatacag	7	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167133545	A	A	167133545	3	1	106	1	0	0	0	0	1	0	0	0	14038	1812	63	5	3192	5	SCN9A	2	167133545	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	237532	167133545	76065828	340	103035											
AGPS	8540	broad.mit.edu	37	chr2	178388448	178388448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaaatctaactagcaaCaatttgttgtgttgtttcca	6	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178388448	A	A	178388448	1	1	106	0	1	0	0	0	0	0	0	0	394	493	17	3		3	AGPS	2	178388448	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	11254903	178388448	64810925	341	103036											
OSBPL6	114880	broad.mit.edu	37	chr2	179259071	179259071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaatttagaagctgcaGcatcagagaagcaaagagta	11	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179259071	T	T	179259071	3	4	106	1	0	0	0	0	1	0	0	0	11375	971	34	3	2813	3	OSBPL6	2	179259071	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	870623	179259071	63940302	342	103037											
TTN	7273	broad.mit.edu	37	chr2	179457057	179457057	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttatccatataagagctCaaaattatcaaaatttattt	2	5	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179457057	A	A	179457057	1	1	106	0	1	0	0	0	0	0	0	0	16861	841	29	3		3	TTN	2	179457057	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	197986	179457057	63742316	343	103038											
TTN	7273	broad.mit.edu	37	chr2	179592523	179592523	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttccttttagtattgcCttaaattccactgtagaatc	7	8	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179592523	T	T	179592523	2	4	106	1	0	0	0	0	0	0	0	1	16861	680	24	4		4	TTN	2	179592523	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	135466	179592523	63606850	344	103039											
NUP35	129401	broad.mit.edu	37	chr2	183989185	183989185	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtgtagttgccgacgcAatggcagcctttgcagtgga	13	8	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183989185	T	T	183989185	1	4	106	0	1	0	0	0	0	0	0	0	10858	145	5	5		5	NUP35	2	183989185	5'UTR	SNP	A	TCGA-44-2656-01A-02D-0969-08	4396662	183989185	59210188	345	103040											
FAM171B	165215	broad.mit.edu	37	chr2	187608315	187608315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagctggtaagtaccataCttcttactaagtaaacactt	5	8	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187608315	A	A	187608315	1	1	106	0	1	0	0	0	0	0	0	0	5536	580	20	3		3	FAM171B	2	187608315	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3619130	187608315	55591058	346	103041											
FAM171B	165215	broad.mit.edu	37	chr2	187626258	187626258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatatcactaaacttgagGtcctcaagagagaccagaca	8	9	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187626258	T	T	187626258	3	4	106	1	0	0	0	0	1	0	0	0	5536	1261	44	3	1219	3	FAM171B	2	187626258	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	17943	187626258	55573115	347	103042											
COL3A1	1281	broad.mit.edu	37	chr2	189849689	189849689	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacagcctccaactgctGtgagtttaaagataaactgt	8	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189849689	T	T	189849689	5	4	106	1	0	0	0	0	0	0	1	0	3720	1391	48	3	289	3	COL3A1	2	189849689	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	2223431	189849689	53349684	348	103043											
COL3A1	1281	broad.mit.edu	37	chr2	189872628	189872628	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggccctgctggtcagcaGggtgcaatcggcagtccagg	16	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189872628	A	A	189872628	2	1	106	1	0	0	0	0	0	0	0	1	3720	991	35	4		4	COL3A1	2	189872628	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	22939	189872628	53326745	349	103044											
COL5A2	1290	broad.mit.edu	37	chr2	189904126	189904126	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagggtagcatgaacccctGggtccgttttgtttttgtca	11	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189904126	A	A	189904126	3	1	106	1	0	0	0	0	1	0	0	0	3729	1348	47	4	718	4	COL5A2	2	189904126	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	31498	189904126	53295247	350	103045											
STAT4	6775	broad.mit.edu	37	chr2	192011545	192011545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaatgtctacttttttaCcatactaactttaaaacaat	2	7	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192011545	A	A	192011545	1	1	106	0	1	0	0	0	0	0	0	0	15385	522	18	3		3	STAT4	2	192011545	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2107419	192011545	51187828	351	103046											
PTH2R	5746	broad.mit.edu	37	chr2	209302554	209302554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttaaataaaacatgggCcaattattcagactgccttc	6	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209302554	A	A	209302554	3	1	106	1	0	0	0	0	1	0	0	0	12866	739	26	3	373	3	PTH2R	2	209302554	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	17291009	209302554	33896819	352	103047											
CPS1	1373	broad.mit.edu	37	chr2	211515047	211515047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagtcaagtctagtattaGcataaacctgacctgctttt	6	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211515047	T	T	211515047	1	4	106	0	1	0	0	0	0	0	0	0	3855	986	34	3		3	CPS1	2	211515047	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2212493	211515047	31684326	353	103048											
PECR	55825	broad.mit.edu	37	chr2	216923646	216923646	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatccagctttagtagGgacaatgatattgacgatag	11	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216923646	A	A	216923646	3	1	106	1	0	0	0	0	1	0	0	0	11811	1232	43	4	453	4	PECR	2	216923646	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	5408599	216923646	26275727	354	103049											
AAMP	14	broad.mit.edu	37	chr2	219132393	219132393	+	Intron	DEL	C	-	-													gctcccacctagggctctgtCcttcacaatcttcaggaaac							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	219132393	-	-	219132393	6	5	106	0	1	1	0	1	0	0	0	0	17	870	30	0		0	AAMP	2	219132393	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	2208747	219132393	24066980	355	103050											
PLCD4	84812	broad.mit.edu	37	chr2	219492945	219492945	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccagagcagcgtcgagggAtatatacggtgcagtggtgg	18	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219492945	T	T	219492945	2	4	106	1	0	0	0	0	0	0	0	1	12128	320	12	5		5	PLCD4	2	219492945	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	360552	219492945	23706428	356	103051											
CCDC108	255101	broad.mit.edu	37	chr2	219903373	219903373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagggaggagactctcatGgccatccttgtcatggagga	14	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219903373	T	T	219903373	1	4	106	0	1	0	0	0	0	0	0	0	2769	1363	47	2		2	CCDC108	2	219903373	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	410428	219903373	23296000	357	103052											
SPEG	10290	broad.mit.edu	37	chr2	220353298	220353298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgctcagcatcccccGggcgggcaagcggcacgccg	15	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220353298	T	T	220353298	3	4	106	1	0	0	0	0	1	0	0	0	15154	1116	39	1	8079	1	SPEG	2	220353298	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	449925	220353298	22846075	358	103053											
GMPPA	29926	broad.mit.edu	37	chr2	220366108	220366108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagctgagactgaaactGgtttctggactttgggccag	12	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220366108	T	T	220366108	1	4	106	0	1	0	0	0	0	0	0	0	6558	1363	47	2		2	GMPPA	2	220366108	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	12810	220366108	22833265	359	103054											
CHPF	79586	broad.mit.edu	37	chr2	220404338	220404338	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggctctccagcagctcctCttcttgttctgaggctgccg	10	15	4	1	rs149014949		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220404338	G	G	220404338	3	3	106	1	0	0	0	0	1	0	0	0	3399	922	32	4	236	4	CHPF	2	220404338	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	38230	220404338	22795035	360	103055											
SLC4A3	6508	broad.mit.edu	37	chr2	220496825	220496825	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagaaaaagctggaccGgaggcctcatgaggtcagga	15	7	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220496825	A	A	220496825	3	1	106	1	0	0	0	0	1	0	0	0	14769	1116	39	4	1050	4	SLC4A3	2	220496825	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	92487	220496825	22702548	361	103056											
EPHA4	2043	broad.mit.edu	37	chr2	222307444	222307444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcactgatttcctcctattaGcaatcagtgggtctgcgcca	9	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222307444	A	A	222307444	1	1	106	0	1	0	0	0	0	0	0	0	5211	986	34	4		4	EPHA4	2	222307444	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1810619	222307444	20891929	362	103057											
SCG2	7857	broad.mit.edu	37	chr2	224463262	224463262	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgggttccagtcttctcCcccgaccacatcttcatagg	7	15	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224463262	A	A	224463262	4	1	106	1	0	0	0	0	0	1	0	0	14003	632	22	2	1118	2	SCG2	2	224463262	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2155818	224463262	18736111	363	103058											
DNER	92737	broad.mit.edu	37	chr2	230341871	230341871	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaccttctggacactggcAggtgaatccactgagactgg	11	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230341871	G	G	230341871	3	3	106	1	0	0	0	0	1	0	0	0	4707	188	7	5	995	5	DNER	2	230341871	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	5878609	230341871	12857502	364	103059											
SP140	11262	broad.mit.edu	37	chr2	231162202	231162202	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacaaattctgaactacgaCccccagaatattccactcct	4	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231162202	T	T	231162202	1	4	106	0	1	0	0	0	0	0	0	0	15076	522	18	4		4	SP140	2	231162202	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	820331	231162202	12037171	365	103060											
B3GNT7	93010	broad.mit.edu	37	chr2	232262811	232262811	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccatgctgctgaaccacccGgagaagtgcaggggcgatgt	14	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232262811	C	C	232262811	2	2	106	1	0	0	0	0	0	0	0	1	1267	1103	39	4		4	B3GNT7	2	232262811	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1100609	232262811	10936562	366	103061											
NMUR1	10316	broad.mit.edu	37	chr2	232393103	232393103	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtctggcactgggcccCggcagggcacgtgcagctgc	16	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232393103	T	T	232393103	3	4	106	1	0	0	0	0	1	0	0	0	10601	652	23	4	659	4	NMUR1	2	232393103	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	130292	232393103	10806270	367	103062											
NGEF	25791	broad.mit.edu	37	chr2	233791952	233791952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaagcaaggattcacctcGgctggctagcgaggggcgtg	15	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233791952	T	T	233791952	1	4	106	0	1	0	0	0	0	0	0	0	10489	1131	39	1		1	NGEF	2	233791952	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1398849	233791952	9407421	368	103063											
UGT1A5	54579	broad.mit.edu	37	chr2	234669911	234669911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgagataatttaaaatGccctcttttgttaatttttg	5	5	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234669911	T	T	234669911	1	4	106	0	1	0	0	0	0	0	0	0	17074	1334	46	3		3	UGT1A5	2	234669911	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	877959	234669911	8529462	369	103064											
HJURP	55355	broad.mit.edu	37	chr2	234762655	234762655	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagaggccgttagtctgGcctggggcgccccaaacgcg	16	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234762655	A	A	234762655	1	1	106	0	1	0	0	0	0	0	0	0	7256	1218	42	4		4	HJURP	2	234762655	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	92744	234762655	8436718	370	103065											
RBM44	375316	broad.mit.edu	37	chr2	238726701	238726701	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtaaagattgtcaaacttCctggacctctgtttttgatg	8	8	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238726701	T	T	238726701	3	4	106	1	0	0	0	0	1	0	0	0	13246	855	30	4	1148	4	RBM44	2	238726701	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3964046	238726701	4472672	371	103066											
HDAC4	9759	broad.mit.edu	37	chr2	240066294	240066294	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catacctgtgacatccaacgGacgcttttttagagcagtga	9	10	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240066294	A	A	240066294	3	1	106	1	0	0	0	0	1	0	0	0	7076	1174	41	4	2484	4	HDAC4	2	240066294	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1339593	240066294	3133079	372	103067											
OR6B2	389090	broad.mit.edu	37	chr2	240969840	240969840	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccttggtgacattctcccCactcatgcctctgtgcttgg	9	14	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240969840	G	G	240969840	3	3	106	1	0	0	0	0	1	0	0	0	11282	594	21	4	933	4	OR6B2	2	240969840	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	903546	240969840	2229533	373	103068											
KIF1A	547	broad.mit.edu	37	chr2	241658642	241658642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagagagctgctcgctgGggccctcggtgggggcagcg	20	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241658642	T	T	241658642	1	4	106	0	1	0	0	0	0	0	0	0	8353	1247	43	2		2	KIF1A	2	241658642	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	688802	241658642	1540731	374	103069											
CNTN6	27255	broad.mit.edu	37	chr3	1415642	1415642	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggtaagacatacaatgcAacagtggttggtttgagtcc	11	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1415642	C	C	1415642	2	2	106	1	0	0	0	0	0	0	0	1	3677	117	5	5		5	CNTN6	3	1415642	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08		1415642	196606788	375	103070											
CNTN4	152330	broad.mit.edu	37	chr3	2908612	2908612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctggggccacctacaCcactaatattgagaaatgat	9	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2908612	A	A	2908612	3	1	106	1	0	0	0	0	1	0	0	0	3675	507	18	3	649	3	CNTN4	3	2908612	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1492970	2908612	195113818	376	103071											
IL5RA	3568	broad.mit.edu	37	chr3	3131894	3131894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtttttatttcagatacGgtgtggggcaggaaagctgg	15	4	1	1	rs140525458	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3131894	T	T	3131894	1	4	106	0	1	0	0	0	0	0	0	0	7770	1131	39	1		1	IL5RA	3	3131894	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	223282	3131894	194890536	377	103072											
MTMR14	64419	broad.mit.edu	37	chr3	9712911	9712911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgtacagatttgcaggGctggcgttagtatgtagctg	15	5	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9712911	T	T	9712911	1	4	106	0	1	0	0	0	0	0	0	0	10036	1218	42	3		3	MTMR14	3	9712911	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	6581017	9712911	188309519	378	103073											
SEC13	6396	broad.mit.edu	37	chr3	10354321	10354321	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggtgccgttttcctctctCcagataatgactttccggtc	8	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10354321	G	G	10354321	3	3	106	1	0	0	0	0	1	0	0	0	14093	856	30	4	734	4	SEC13	3	10354321	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	641410	10354321	187668109	379	103074											
SLC6A11	6538	broad.mit.edu	37	chr3	10967663	10967663	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggatgggactccacccagTggctttctctctctccctcg	10	15	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10967663	C	C	10967663	1	2	106	0	1	0	0	0	0	0	0	0	14788	1711	59	5		5	SLC6A11	3	10967663	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	613342	10967663	187054767	380	103075											
OXSM	54995	broad.mit.edu	37	chr3	25835674	25835674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccacaccattgggagatGctgctgaaaacaaagctatc	8	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25835674	T	T	25835674	3	4	106	1	0	0	0	0	1	0	0	0	11429	1319	46	3	1075	3	OXSM	3	25835674	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	14868011	25835674	172186756	381	103076											
TGFBR2	7048	broad.mit.edu	37	chr3	30715822	30715822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgagcattattccagggGttacaaagcagttattagag	10	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30715822	T	T	30715822	1	4	106	0	1	0	0	0	0	0	0	0	15945	1276	44	3		3	TGFBR2	3	30715822	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4880148	30715822	167306608	382	103077											
OSBPL10	114884	broad.mit.edu	37	chr3	31710397	31710397	+	Intron	DEL	T	-	-													ggtacacccatctctagagaTttttttttttaatcagaaat							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31710397	-	-	31710397	6	5	106	0	1	1	0	1	0	0	0	0	11369	1508	52	0		0	OSBPL10	3	31710397	Intron	DEL	T	TCGA-44-2656-01A-02D-0969-08	994575	31710397	166312033	383	103078											
CRTAP	10491	broad.mit.edu	37	chr3	33171288	33171288	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcgcccgcctcagcctccCgaagtgctgggattacaggc	11	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33171288	T	T	33171288	1	4	106	0	1	0	0	0	0	0	0	0	3930	667	23	4		4	CRTAP	3	33171288	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1460891	33171288	164851142	384	103079											
UBP1	7342	broad.mit.edu	37	chr3	33467035	33467035	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgccaaaatattattttgTatttctgtaaattcttacat	3	5	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33467035	C	C	33467035	1	2	106	0	1	0	0	0	0	0	0	0	17021	1653	57	5		5	UBP1	3	33467035	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	295747	33467035	164555395	385	103080											
TRANK1	9881	broad.mit.edu	37	chr3	36872739	36872739	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaatagttctctgggcCacgggtaaacttcactccac	9	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36872739	T	T	36872739	3	4	106	1	0	0	0	0	1	0	0	0	16578	594	21	4	586	4	TRANK1	3	36872739	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3405704	36872739	161149691	386	103081											
CTDSPL	10217	broad.mit.edu	37	chr3	38006176	38006176	+	Intron	DEL	A	-	-													cgtttaaggtaaatcaacatAaaaaaaaaatccatgatctt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38006176	-	-	38006176	6	5	106	0	1	1	0	1	0	0	0	0	4039	377	13	0		0	CTDSPL	3	38006176	Intron	DEL	A	TCGA-44-2656-01A-02D-0969-08	1133437	38006176	160016254	387	103082											
SLC22A13	9390	broad.mit.edu	37	chr3	38316550	38316550	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcaacttctccctcggGcagatggtgcttgcgggact	13	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38316550	T	T	38316550	2	4	106	1	0	0	0	0	0	0	0	1	14557	1190	42	3		3	SLC22A13	3	38316550	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	310374	38316550	159705880	388	103083											
SLC22A14	9389	broad.mit.edu	37	chr3	38350687	38350687	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatgagtatggagggtcctTgaagctgtgggaatgggtgg	19	4	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38350687	A	A	38350687	1	1	106	0	1	0	0	0	0	0	0	0	14558	1827	63	5		5	SLC22A14	3	38350687	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	34137	38350687	159671743	389	103084											
ULK4	54986	broad.mit.edu	37	chr3	41860964	41860964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatgcagccaagggaacaGcccagcactctctagggttc	11	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41860964	T	T	41860964	3	4	106	1	0	0	0	0	1	0	0	0	17104	971	34	3	2104	3	ULK4	3	41860964	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3510277	41860964	156161466	390	103085											
ULK4	54986	broad.mit.edu	37	chr3	41861077	41861077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcaagcaaatggcacagCtccaagtatacaaactatct	5	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41861077	A	A	41861077	1	1	106	0	1	0	0	0	0	0	0	0	17104	812	28	3		3	ULK4	3	41861077	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	113	41861077	156161353	391	103086											
HHATL	57467	broad.mit.edu	37	chr3	42738369	42738369	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgccacggtcaaagtgCctgtaagaggaaagcagatg	13	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42738369	A	A	42738369	2	1	106	1	0	0	0	0	0	0	0	1	7157	753	26	3		3	HHATL	3	42738369	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	877292	42738369	155284061	392	103087											
TGM4	7047	broad.mit.edu	37	chr3	44951851	44951851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaataagacctcgcagatcCaaggtcaaggtaccagaacc	8	12	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44951851	A	A	44951851	3	1	106	1	0	0	0	0	1	0	0	0	15955	595	21	2	1639	2	TGM4	3	44951851	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2213482	44951851	153070579	393	103088											
FYCO1	79443	broad.mit.edu	37	chr3	46021226	46021226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacttgacaaagcggatccCatcattggctcctttcacct	7	13	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46021226	A	A	46021226	3	1	106	1	0	0	0	0	1	0	0	0	6185	594	21	2	4237	2	FYCO1	3	46021226	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1069375	46021226	152001204	394	103089											
PTH1R	5745	broad.mit.edu	37	chr3	46944739	46944739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggagacacacctgactgCcgcacccttactgccccaag	9	16	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46944739	A	A	46944739	1	1	106	0	1	0	0	0	0	0	0	0	12864	754	26	3		3	PTH1R	3	46944739	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	923513	46944739	151077691	395	103090											
COL7A1	1294	broad.mit.edu	37	chr3	48629039	48629039	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtcctgttggagagcaCagcatagaggcagcctgggg	16	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48629039	A	A	48629039	1	1	106	0	1	0	0	0	0	0	0	0	3736	493	17	3		3	COL7A1	3	48629039	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1684300	48629039	149393391	396	103091											
SEMA3F	6405	broad.mit.edu	37	chr3	50220473	50220473	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgcccagcaggcaggcAgggtgctctggctacagcaa	15	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50220473	T	T	50220473	1	4	106	0	1	0	0	0	0	0	0	0	14142	203	7	5		5	SEMA3F	3	50220473	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1591434	50220473	147801957	397	103092											
IFRD2	7866	broad.mit.edu	37	chr3	50327585	50327585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtttaagtctcccacaCacccccaggtccaacctttc	4	19	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50327585	A	A	50327585	1	1	106	0	1	0	0	0	0	0	0	0	7624	493	17	3		3	IFRD2	3	50327585	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	107112	50327585	147694845	398	103093											
RASSF1	11186	broad.mit.edu	37	chr3	50368057	50368057	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcttggatcttctggcgGcaataggagtacttctgcag	12	10	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50368057	A	A	50368057	2	1	106	1	0	0	0	0	0	0	0	1	13192	1195	42	4		4	RASSF1	3	50368057	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	40472	50368057	147654373	399	103094											
NEK4	6787	broad.mit.edu	37	chr3	52797446	52797446	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagccaccctctttcacccCatctatttagcccagctatt	4	16	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52797446	G	G	52797446	1	3	106	0	1	0	0	0	0	0	0	0	10421	609	21	4		4	NEK4	3	52797446	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2429389	52797446	145224984	400	103095											
ITIH1	3697	broad.mit.edu	37	chr3	52818397	52818397	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaacctgggtttcggccaCaatgtggactttaactttct	8	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52818397	T	T	52818397	2	4	106	1	0	0	0	0	0	0	0	1	7973	477	17	4		4	ITIH1	3	52818397	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	20951	52818397	145204033	401	103096											
TMEM110	375346	broad.mit.edu	37	chr3	52867623	52867623	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagccccagatggcatgaGgacactcaccacactctcgc	8	18	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52867623	A	A	52867623	1	1	106	0	1	0	0	0	0	0	0	0	16150	1015	35	4		4	TMEM110	3	52867623	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	49226	52867623	145154807	402	103097											
CACNA1D	776	broad.mit.edu	37	chr3	53815794	53815794	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgcaaaatgctttatgTatcatttagagcattaaggc	8	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53815794	C	C	53815794	1	2	106	0	1	0	0	0	0	0	0	0	2567	1653	57	5		5	CACNA1D	3	53815794	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	948171	53815794	144206636	403	103098											
C3orf67	200844	broad.mit.edu	37	chr3	58856153	58856153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaatcccccctcccccCtcagcatgtattaaaaacac	2	18	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58856153	A	A	58856153	1	1	106	0	1	0	0	0	0	0	0	0	2263	696	24	2		2	C3orf67	3	58856153	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5040359	58856153	139166277	404	103099											
PTPRG	5793	broad.mit.edu	37	chr3	62248420	62248420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgcctttaaatgtatatGgtgttcctttgtttctaaac	6	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62248420	T	T	62248420	1	4	106	0	1	0	0	0	0	0	0	0	12910	1363	47	2		2	PTPRG	3	62248420	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3392267	62248420	135774010	405	103100											
CADPS	8618	broad.mit.edu	37	chr3	62636588	62636588	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcactctcctcgcccatgtcGatgatggaagcattgtggct	10	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62636588	C	C	62636588	3	2	106	1	0	0	0	0	1	0	0	0	2596	1048	37	4	3101	4	CADPS	3	62636588	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	388168	62636588	135385842	406	103101											
CADPS	8618	broad.mit.edu	37	chr3	62751567	62751567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagtaactctgcacagcGttcatgaaggcttcgtcagc	9	11	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62751567	T	T	62751567	3	4	106	1	0	0	0	0	1	0	0	0	2596	1136	40	3	3716	3	CADPS	3	62751567	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	114979	62751567	135270863	407	103102											
ADAMTS9	56999	broad.mit.edu	37	chr3	64524827	64524827	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaactgaggatgttcccGggaaaggtgggaggtgaatc	16	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64524827	A	A	64524827	1	1	106	0	1	0	0	0	0	0	0	0	273	1131	39	4		4	ADAMTS9	3	64524827	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1773260	64524827	133497603	408	103103											
ADAMTS9	56999	broad.mit.edu	37	chr3	64641633	64641633	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtcttacgttgggctccaCctcttttttacgtttcttgc	7	12	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64641633	T	T	64641633	1	4	106	0	1	0	0	0	0	0	0	0	273	522	18	4		4	ADAMTS9	3	64641633	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	116806	64641633	133380797	409	103104											
FAM19A1	407738	broad.mit.edu	37	chr3	68055693	68055693	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgacgtctgagacctcccttCcctcatcagtggggctgact	10	14	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68055693	A	A	68055693	1	1	106	0	1	0	0	0	0	0	0	0	5578	870	30	3		3	FAM19A1	3	68055693	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3414060	68055693	129966737	410	103105											
FRMD4B	23150	broad.mit.edu	37	chr3	69360560	69360560	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggttgcctctctcttactGctaccaccttcctctgccct	5	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69360560	A	A	69360560	1	1	106	0	1	0	0	0	0	0	0	0	6112	1334	46	4		4	FRMD4B	3	69360560	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1304867	69360560	128661870	411	103106											
SHQ1	55164	broad.mit.edu	37	chr3	72873746	72873746	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactatacaggatttcactGgcttttactttttaacattt	4	7	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72873746	A	A	72873746	1	1	106	0	1	0	0	0	0	0	0	0	14405	1363	47	4		4	SHQ1	3	72873746	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3513186	72873746	125148684	412	103107											
PDZRN3	23024	broad.mit.edu	37	chr3	73432850	73432850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgtcgtcggtggtcatgCcgctgcgctcttcccggatc	13	15	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73432850	A	A	73432850	3	1	106	1	0	0	0	0	1	0	0	0	11803	739	26	3	337	3	PDZRN3	3	73432850	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	559104	73432850	124589580	413	103108											
PDZRN3	23024	broad.mit.edu	37	chr3	73432940	73432940	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtagcgcgtcccgtcgctgCggatcttcaccttccactcc	9	17	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73432940	G	G	73432940	3	3	106	1	0	0	0	0	1	0	0	0	11803	768	27	4	427	4	PDZRN3	3	73432940	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	90	73432940	124589490	414	103109											
PDZRN3	23024	broad.mit.edu	37	chr3	73673725	73673725	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccgcagccgcgcgtcgcGtacgcgcacttgatgtccag	14	16	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73673725	T	T	73673725	4	4	106	1	0	0	0	0	0	1	0	0	11803	1140	40	3	2988	3	PDZRN3	3	73673725	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	240785	73673725	124348705	415	103110											
ROBO1	6091	broad.mit.edu	37	chr3	78667283	78667283	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcacaagcatgcagattTgacctttacttcttttgagc	6	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78667283	A	A	78667283	1	1	106	0	1	0	0	0	0	0	0	0	13624	1827	63	5		5	ROBO1	3	78667283	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	4993558	78667283	119355147	416	103111											
EPHA6	285220	broad.mit.edu	37	chr3	96706434	96706434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattaaattcaagccaaaCcagtatacaaagatcgacac	6	9	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96706434	A	A	96706434	3	1	106	1	0	0	0	0	1	0	0	0	5213	506	18	3	721	3	EPHA6	3	96706434	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	18039151	96706434	101315996	417	103112											
OR5K3	403277	broad.mit.edu	37	chr3	98110266	98110266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaatattctgtgattccCttctcttcatgtatgctcga	6	10	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98110266	A	A	98110266	3	1	106	1	0	0	0	0	1	0	0	0	11262	681	24	2	759	2	OR5K3	3	98110266	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1403832	98110266	99912164	418	103113											
OR5K1	26339	broad.mit.edu	37	chr3	98188534	98188534	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgccatctatctgatcacCgtggtggggaatattagttt	10	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98188534	G	G	98188534	2	3	106	1	0	0	0	0	0	0	0	1	11260	639	23	4		4	OR5K1	3	98188534	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	78268	98188534	99833896	419	103114											
CLDND1	56650	broad.mit.edu	37	chr3	98241753	98241753	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccacagcaccctactctcCccgcgcctcctctgacgcac	6	22	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98241753	A	A	98241753	1	1	106	0	1	0	0	0	0	0	0	0	3525	638	22	2		2	CLDND1	3	98241753	5'Flank	SNP	C	TCGA-44-2656-01A-02D-0969-08	53219	98241753	99780677	420	103115											
C3orf26	84319	broad.mit.edu	37	chr3	99897073	99897073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtaaatatcagggagtcCtgatggttgaatgtattcac	12	5	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99897073	A	A	99897073	1	1	106	0	1	0	0	0	0	0	0	0	2240	696	24	2		2	C3orf26	3	99897073	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1655320	99897073	98125357	421	103116											
TMEM45A	55076	broad.mit.edu	37	chr3	100275843	100275843	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttagtgagtattttcatgtAcctttctctattagtgagca	8	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100275843	T	T	100275843	1	4	106	0	1	0	0	0	0	0	0	0	16292	406	14	5		5	TMEM45A	3	100275843	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	378770	100275843	97746587	422	103117											
RPL24	6152	broad.mit.edu	37	chr3	101401235	101401235	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaagaaaattttcctgTtgtattgttcaagaaagtaa	6	3	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101401235	C	C	101401235	1	2	106	0	1	0	0	0	0	0	0	0	13683	1740	60	5		5	RPL24	3	101401235	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1125392	101401235	96621195	423	103118											
ZPLD1	131368	broad.mit.edu	37	chr3	102187730	102187730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaatggcggagtcttaataCggtagaaattaatttacaag	10	4	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102187730	T	T	102187730	1	4	106	0	1	0	0	0	0	0	0	0	18350	551	19	4		4	ZPLD1	3	102187730	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	786495	102187730	95834700	424	103119											
KIAA1524	57650	broad.mit.edu	37	chr3	108278693	108278693	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcttttgtttccaaaagatCttgtagcctgctttctttgg	8	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108278693	A	A	108278693	3	1	106	1	0	0	0	0	1	0	0	0	8309	913	32	3	817	3	KIAA1524	3	108278693	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	6090963	108278693	89743737	425	103120											
GUCA1C	9626	broad.mit.edu	37	chr3	108627169	108627169	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatatcctttcccctcaacCagactctaagatctttgaag	5	12	3	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108627169	G	G	108627169	1	3	106	0	1	0	0	0	0	0	0	0	6955	609	21	4		4	GUCA1C	3	108627169	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	348476	108627169	89395261	426	103121											
BTLA	151888	broad.mit.edu	37	chr3	112198678	112198678	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtaccatatatatgtgActtcaatagttctcaagcat	7	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112198678	T	T	112198678	1	4	106	0	1	0	0	0	0	0	0	0	1568	290	10	5		5	BTLA	3	112198678	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3571509	112198678	85823752	427	103122											
WDR52	55779	broad.mit.edu	37	chr3	113084798	113084798	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaatgtgtctaaataacTtttaatttataacgaatatg	7	3	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113084798	A	A	113084798	1	1	106	0	1	0	0	0	0	0	0	0	17431	1624	56	5		5	WDR52	3	113084798	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	886120	113084798	84937632	428	103123											
KIAA2018	205717	broad.mit.edu	37	chr3	113375768	113375768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggggatggttatgatgGttccgactagttgaagggtt	15	4	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113375768	T	T	113375768	3	4	106	1	0	0	0	0	1	0	0	0	8338	1252	44	3	1980	3	KIAA2018	3	113375768	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	290970	113375768	84646662	429	103124											
LSAMP	4045	broad.mit.edu	37	chr3	115805319	115805319	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagctcaacccgtgggtcCagagaccacttgtcatgtcc	9	15	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115805319	A	A	115805319	2	1	106	1	0	0	0	0	0	0	0	1	9135	581	21	2		2	LSAMP	3	115805319	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2429551	115805319	82217111	430	103125											
RABL3	285282	broad.mit.edu	37	chr3	120417341	120417341	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaacttcatggcgctttgTttcatgaatctggtccagtt	8	8	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120417341	A	A	120417341	3	1	106	1	0	0	0	0	1	0	0	0	13080	1725	60	5	263	5	RABL3	3	120417341	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	4612022	120417341	77605089	431	103126											
POLQ	10721	broad.mit.edu	37	chr3	121209249	121209249	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttcctcatccactgccttCcgggcactacacaaggagat	7	15	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121209249	A	A	121209249	2	1	106	1	0	0	0	0	0	0	0	1	12303	842	30	3		3	POLQ	3	121209249	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	791908	121209249	76813181	432	103127											
SLC15A2	6565	broad.mit.edu	37	chr3	121634399	121634399	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcaacaacctgagcttgtAgaataaaacatcaaatattc	4	8	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121634399	T	T	121634399	1	4	106	0	1	0	0	0	0	0	0	0	14512	435	15	5		5	SLC15A2	3	121634399	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	425150	121634399	76388031	433	103128											
DTX3L	151636	broad.mit.edu	37	chr3	122288915	122288915	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttcttgccactatgctacGattaccagggcaaaagagac	9	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122288915	T	T	122288915	1	4	106	0	1	0	0	0	0	0	0	0	4836	1073	37	3		3	DTX3L	3	122288915	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	654516	122288915	75733515	434	103129											
SEMA5B	54437	broad.mit.edu	37	chr3	122629255	122629255	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgcaagaacactcagacTgcggatccagtgctctgttc	10	13	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122629255	A	A	122629255	1	1	106	0	1	0	0	0	0	0	0	0	14151	1595	55	5		5	SEMA5B	3	122629255	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	340340	122629255	75393175	435	103130											
SEMA5B	54437	broad.mit.edu	37	chr3	122642418	122642418	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtggctggtaatctgggGgtaaggcagtgtgtgaagac	17	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122642418	A	A	122642418	1	1	106	0	1	0	0	0	0	0	0	0	14151	1247	43	4		4	SEMA5B	3	122642418	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	13163	122642418	75380012	436	103131											
PDIA5	10954	broad.mit.edu	37	chr3	122829931	122829931	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgggggttgcgggcgGggtctgggggattagcctgg	24	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122829931	C	C	122829931	1	2	106	0	1	0	0	0	0	0	0	0	11765	1247	43	4		4	PDIA5	3	122829931	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	187513	122829931	75192499	437	103132											
ADCY5	111	broad.mit.edu	37	chr3	123038503	123038503	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacaggggcctccttcCcacccagggtgctgtacctt	10	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123038503	T	T	123038503	1	4	106	0	1	0	0	0	0	0	0	0	297	638	22	4		4	ADCY5	3	123038503	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	208572	123038503	74983927	438	103133											
ADCY5	111	broad.mit.edu	37	chr3	123046503	123046503	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggatgaggaaggtctcgaTactgtgctccttgaggtagg	15	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123046503	A	A	123046503	3	1	106	1	0	0	0	0	1	0	0	0	297	1406	49	5	1936	5	ADCY5	3	123046503	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	8000	123046503	74975927	439	103134											
KALRN	8997	broad.mit.edu	37	chr3	124053026	124053026	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctcagaaggcctagtcagGgaccctcaggcagacacttc	10	13	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124053026	C	C	124053026	1	2	106	0	1	0	0	0	0	0	0	0	8045	1247	43	4		4	KALRN	3	124053026	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1006523	124053026	73969404	440	103135											
ITGB5	3693	broad.mit.edu	37	chr3	124538552	124538552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaccacccacttcacccCacaaatcactagcctccctc	1	23	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124538552	A	A	124538552	1	1	106	0	1	0	0	0	0	0	0	0	7968	609	21	2		2	ITGB5	3	124538552	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	485526	124538552	73483878	441	103136											
ROPN1B	152015	broad.mit.edu	37	chr3	125691123	125691123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggtcgggactaactggCatcgtctttgttttagctct	13	8	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125691123	A	A	125691123	1	1	106	0	1	0	0	0	0	0	0	0	13635	725	25	3		3	ROPN1B	3	125691123	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1152571	125691123	72331307	442	103137											
ALDH1L1	10840	broad.mit.edu	37	chr3	125850370	125850370	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggtgctgctccatgagatCtgccaacctgaccagggtga	12	12	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125850370	A	A	125850370	3	1	106	1	0	0	0	0	1	0	0	0	494	913	32	3	1272	3	ALDH1L1	3	125850370	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	159247	125850370	72172060	443	103138											
ALDH1L1	10840	broad.mit.edu	37	chr3	125872401	125872401	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accaggcctgaagtgttcagCgttgagttgaaaaatgtcag	12	7	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125872401	G	G	125872401	2	3	106	1	0	0	0	0	0	0	0	1	494	755	27	4		4	ALDH1L1	3	125872401	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	22031	125872401	72150029	444	103139											
ALDH1L1	10840	broad.mit.edu	37	chr3	125872469	125872469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtgggtgagaagaagcCcccgaagccagtagcccagg	16	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125872469	A	A	125872469	1	1	106	0	1	0	0	0	0	0	0	0	494	638	22	2		2	ALDH1L1	3	125872469	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	68	125872469	72149961	445	103140											
ALDH1L1	10840	broad.mit.edu	37	chr3	125877630	125877630	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggctccactgggcaacacaGacggatgcaccagccaagca	11	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125877630	C	C	125877630	1	2	106	0	1	0	0	0	0	0	0	0	494	957	33	4		4	ALDH1L1	3	125877630	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5161	125877630	72144800	446	103141											
CHST13	166012	broad.mit.edu	37	chr3	126255153	126255153	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctccagctggcttggtgGggagaagagaagccccctgc	17	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126255153	C	C	126255153	3	2	106	1	0	0	0	0	1	0	0	0	3432	1232	43	4	143	4	CHST13	3	126255153	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	377523	126255153	71767277	447	103142											
RUVBL1	8607	broad.mit.edu	37	chr3	127842427	127842427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggtccactggccacacCtctcgcgcgttctcctggcc	9	20	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127842427	A	A	127842427	3	1	106	1	0	0	0	0	1	0	0	0	13863	695	24	2	1273	2	RUVBL1	3	127842427	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1587274	127842427	70180003	448	103143											
ACAD9	28976	broad.mit.edu	37	chr3	128598411	128598411	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccatcccctgctgcggGggaccgcgcaagcgcagtga	13	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128598411	T	T	128598411	1	4	106	0	1	0	0	0	0	0	0	0	111	1247	43	2		2	ACAD9	3	128598411	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	755984	128598411	69424019	449	103144											
PLXND1	23129	broad.mit.edu	37	chr3	129279567	129279567	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgtccaagtctttcaCtgtgagaggaaaaacacaat	8	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129279567	G	G	129279567	5	3	106	1	0	0	0	0	0	0	1	0	12222	579	20	4	812	4	PLXND1	3	129279567	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	681156	129279567	68742863	450	103145											
DNAJC13	23317	broad.mit.edu	37	chr3	132196553	132196553	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaataagttttgaacagaaAgaactataagaaacaattat	6	3	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132196553	T	T	132196553	1	4	106	0	1	0	0	0	0	0	0	0	4672	87	3	5		5	DNAJC13	3	132196553	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2916986	132196553	65825877	451	103146											
ACAD11	84129	broad.mit.edu	37	chr3	132361036	132361036	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaatactttgtcgaataTactagaaaaacattcatttg	4	6	2	1	rs138309691	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132361036	C	C	132361036	1	2	106	0	1	0	0	0	0	0	0	0	109	1421	49	5		5	ACAD11	3	132361036	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	164483	132361036	65661394	452	103147											
NPHP3	27031	broad.mit.edu	37	chr3	132440852	132440852	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccgtgtccagcttggcCtcgcggcggcccatggacaa	12	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132440852	T	T	132440852	2	4	106	1	0	0	0	0	0	0	0	1	10675	680	24	4		4	NPHP3	3	132440852	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	79816	132440852	65581578	453	103148											
TMEM108	66000	broad.mit.edu	37	chr3	133098490	133098490	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgggctcaggaatgctcctGacgtttcctgagttcccagc	12	12	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133098490	A	A	133098490	1	1	106	0	1	0	0	0	0	0	0	0	16147	1305	45	4		4	TMEM108	3	133098490	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	657638	133098490	64923940	454	103149											
SOX14	8403	broad.mit.edu	37	chr3	137483858	137483858	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaccctgactacaagtacCgacctcggcgcaagcccaag	9	16	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137483858	A	A	137483858	2	1	106	1	0	0	0	0	0	0	0	1	15059	644	23	1		1	SOX14	3	137483858	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	4385368	137483858	60538572	455	103150											
ARMC8	25852	broad.mit.edu	37	chr3	138014742	138014742	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacctggcatgatgggagtGcccctgggcacctgcgagca	15	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138014742	A	A	138014742	1	1	106	0	1	0	0	0	0	0	0	0	961	1334	46	4		4	ARMC8	3	138014742	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	530884	138014742	60007688	456	103151											
CLSTN2	64084	broad.mit.edu	37	chr3	140265582	140265582	+	Intron	SNP	A	T	T													attcatgatgcccagcctgcAcagcgccagcacacgccagg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140265582	T	T	140265582	1	4	106	0	1	0	0	0	0	0	0	0	3594	174	6	5		5	CLSTN2	3	140265582	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2250840	140265582	57756848	457	103152	450	2									
CLSTN2	64084	broad.mit.edu	37	chr3	140265584	140265584	+	Intron	SNP	A	T	T													tcatgatgcccagcctgcacAgcgccagcacacgccaggaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140265584	T	T	140265584	1	4	106	0	1	0	0	0	0	0	0	0	3594	203	7	5		5	CLSTN2	3	140265584	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2	140265584	57756846	458	103153	450	2									
PAQR9	344838	broad.mit.edu	37	chr3	142681802	142681802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagcagcactcccgacGcgtagcaccacaacggtagc	11	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142681802	T	T	142681802	3	4	106	1	0	0	0	0	1	0	0	0	11536	1087	38	3	760	3	PAQR9	3	142681802	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2416218	142681802	55340628	459	103154											
CHST2	9435	broad.mit.edu	37	chr3	142840553	142840553	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaggagtgccgcaagtacCgcacactagtcataaagggt	13	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142840553	G	G	142840553	3	3	106	1	0	0	0	0	1	0	0	0	3435	652	23	4	897	4	CHST2	3	142840553	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	158751	142840553	55181877	460	103155											
ZIC1	7545	broad.mit.edu	37	chr3	147130652	147130652	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaaaaggggatgggagtgtCcaaggccgttttaaattttt	14	4	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147130652	A	A	147130652	1	1	106	0	1	0	0	0	0	0	0	0	17804	870	30	3		3	ZIC1	3	147130652	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4290099	147130652	50891778	461	103156											
HLTF	6596	broad.mit.edu	37	chr3	148777447	148777447	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataacttaaaattttaaatTttttcattcaaaaacagaaa	1	4	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148777447	A	A	148777447	1	1	106	0	1	0	0	0	0	0	0	0	7282	1856	64	5		5	HLTF	3	148777447	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1646795	148777447	49244983	462	103157											
IGSF10	285313	broad.mit.edu	37	chr3	151154859	151154859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttcctctgtcataagctGttgcttctttaatgactaag	7	8	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151154859	T	T	151154859	3	4	106	1	0	0	0	0	1	0	0	0	7667	1377	48	3	385	3	IGSF10	3	151154859	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2377412	151154859	46867571	463	103158											
IGSF10	285313	broad.mit.edu	37	chr3	151164627	151164627	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatgcagtagtgcttttttCagaagaacctctggttgttg	11	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151164627	A	A	151164627	4	1	106	1	0	0	0	0	0	1	0	0	7667	835	29	3	4789	3	IGSF10	3	151164627	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	9768	151164627	46857803	464	103159											
AADACL2	344752	broad.mit.edu	37	chr3	151474962	151474962	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgaagcacttccctgGgcaatgagaagaaaccaaca	10	9	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151474962	A	A	151474962	4	1	106	1	0	0	0	0	0	1	0	0	11	1241	43	4	804	4	AADACL2	3	151474962	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	310335	151474962	46547468	465	103160											
IFT80	57560	broad.mit.edu	37	chr3	159998598	159998598	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgccaaagtatgcaccatTgttccttaatttaaaaagaa	5	8	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159998598	A	A	159998598	2	1	106	1	0	0	0	0	0	0	0	1	7634	1799	63	5		5	IFT80	3	159998598	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	8523636	159998598	38023832	466	103161											
SMC4	10051	broad.mit.edu	37	chr3	160120494	160120494	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattatcgggccaaatggcAgtggcaaatccaatgttatt	10	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160120494	T	T	160120494	3	4	106	1	0	0	0	0	1	0	0	0	14899	188	7	5	359	5	SMC4	3	160120494	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	121896	160120494	37901936	467	103162											
SI	6476	broad.mit.edu	37	chr3	164737625	164737625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagtatcacaaataataaCggtaattctttcttagatta	5	5	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164737625	A	A	164737625	1	1	106	0	1	0	0	0	0	0	0	0	14410	551	19	3		3	SI	3	164737625	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4617131	164737625	33284805	468	103163											
ECT2	1894	broad.mit.edu	37	chr3	172491841	172491841	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatatgttagattggtagtAatttttttcagattgtacat	8	2	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172491841	T	T	172491841	1	4	106	0	1	0	0	0	0	0	0	0	4941	377	13	5		5	ECT2	3	172491841	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	7754216	172491841	25530589	469	103164											
PEX5L	51555	broad.mit.edu	37	chr3	179529714	179529714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagaattactcatgtgCttcagttggtttgttgacct	10	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179529714	T	T	179529714	1	4	106	0	1	0	0	0	0	0	0	0	11844	812	28	4		4	PEX5L	3	179529714	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	7037873	179529714	18492716	470	103165											
DCUN1D1	54165	broad.mit.edu	37	chr3	182681763	182681763	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataatcaacacactaatgcTggctggatcgagtgccaggt	10	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182681763	C	C	182681763	3	2	106	1	0	0	0	0	1	0	0	0	4346	1580	55	5	504	5	DCUN1D1	3	182681763	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	3152049	182681763	15340667	471	103166											
KLHL6	89857	broad.mit.edu	37	chr3	183209920	183209920	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagccggttgttgcagggcGcgataccgcagctggcccgc	16	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183209920	C	C	183209920	3	2	106	1	0	0	0	0	1	0	0	0	8464	1087	38	4	208	4	KLHL6	3	183209920	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	528157	183209920	14812510	472	103167											
DVL3	1857	broad.mit.edu	37	chr3	183882762	183882762	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtggggcaggtgaccctGgaggagccctaaaccctgag	15	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183882762	T	T	183882762	1	4	106	0	1	0	0	0	0	0	0	0	4877	1363	47	2		2	DVL3	3	183882762	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	672842	183882762	14139668	473	103168											
VPS8	23355	broad.mit.edu	37	chr3	184587421	184587421	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatggctacaatctagaagaGagtgtattaaaaaacacaca	7	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184587421	C	C	184587421	1	2	106	0	1	0	0	0	0	0	0	0	17345	957	33	4		4	VPS8	3	184587421	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	704659	184587421	13435009	474	103169											
VPS8	23355	broad.mit.edu	37	chr3	184632747	184632747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttacaagtcaccatatcCattctcattcttttcttcta	1	13	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184632747	A	A	184632747	1	1	106	0	1	0	0	0	0	0	0	0	17345	609	21	2		2	VPS8	3	184632747	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	45326	184632747	13389683	475	103170											
DGKG	1608	broad.mit.edu	37	chr3	186015365	186015365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccatgggacctggtttgcCttgattgtgtctgtgtctcg	12	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186015365	T	T	186015365	1	4	106	0	1	0	0	0	0	0	0	0	4509	696	24	4		4	DGKG	3	186015365	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1382618	186015365	12007065	476	103171											
KNG1	3827	broad.mit.edu	37	chr3	186440181	186440181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtattaggtagactttcCcatctgaaagattaagataa	7	6	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186440181	A	A	186440181	1	1	106	0	1	0	0	0	0	0	0	0	8498	638	22	2		2	KNG1	3	186440181	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	424816	186440181	11582249	477	103172											
EIF4A2	1974	broad.mit.edu	37	chr3	186505350	186505350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggtcagggtcaagtcgtGttctgatcactactgacttg	11	10	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186505350	T	T	186505350	3	4	106	1	0	0	0	0	1	0	0	0	5067	1377	48	3	1010	3	EIF4A2	3	186505350	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	65169	186505350	11517080	478	103173											
MASP1	5648	broad.mit.edu	37	chr3	186938944	186938944	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagaacacaaagctgttattGgtcctcatccccggctgaga	9	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186938944	C	C	186938944	1	2	106	0	1	0	0	0	0	0	0	0	9414	1363	47	4		4	MASP1	3	186938944	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	433594	186938944	11083486	479	103174											
GAK	2580	broad.mit.edu	37	chr4	882787	882787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacagtctcagcaggccCcaggtgctcggtcccacctc	10	17	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	882787	A	A	882787	1	1	106	0	1	0	0	0	0	0	0	0	6257	638	22	2		2	GAK	4	882787	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08		882787	190271489	480	103175											
GAK	2580	broad.mit.edu	37	chr4	905514	905514	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccccgtgtctgactccTcttttcctatagacgctgca	7	16	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	905514	A	A	905514	3	1	106	1	0	0	0	0	1	0	0	0	6257	1551	54	5	3706	5	GAK	4	905514	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	22727	905514	190248762	481	103176											
WHSC1	7468	broad.mit.edu	37	chr4	1937166	1937166	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccccattgagaaaggctGcttgcaggttcttaccctcc	9	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1937166	A	A	1937166	1	1	106	0	1	0	0	0	0	0	0	0	17489	1334	46	4		4	WHSC1	4	1937166	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1031652	1937166	189217110	482	103177											
GRK4	2868	broad.mit.edu	37	chr4	3006137	3006137	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagctttcaggaggtttctCtgcataagacaagttcctag	9	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3006137	T	T	3006137	1	4	106	0	1	0	0	0	0	0	0	0	6857	928	32	4		4	GRK4	4	3006137	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1068971	3006137	188148139	483	103178											
ADRA2C	152	broad.mit.edu	37	chr4	3769830	3769830	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggggatggattggcctccaGggcgcaggggagggtgcggc	22	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3769830	A	A	3769830	1	1	106	0	1	0	0	0	0	0	0	0	339	1015	35	4		4	ADRA2C	4	3769830	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	763693	3769830	187384446	484	103179											
STX18	53407	broad.mit.edu	37	chr4	4422554	4422554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgggactcagtgctgCgccacgtcgcacctggggaa	15	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4422554	A	A	4422554	1	1	106	0	1	0	0	0	0	0	0	0	15459	783	27	3		3	STX18	4	4422554	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	652724	4422554	186731722	485	103180											
CNO	55330	broad.mit.edu	37	chr4	6718442	6718442	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcaccttccccagggCgttcaagaagctcctgcaca	11	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6718442	T	T	6718442	3	4	106	1	0	0	0	0	1	0	0	0	3648	768	27	4	508	4	CNO	4	6718442	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2295888	6718442	184435834	486	103181											
BOD1L	259282	broad.mit.edu	37	chr4	13605956	13605956	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgataccatgttgcttggaAcccagagaatctttctgaat	9	8	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13605956	G	G	13605956	2	3	106	1	0	0	0	0	0	0	0	1	1489	30	2	5		5	BOD1L	4	13605956	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	6887514	13605956	177548320	487	103182											
PACRGL	133015	broad.mit.edu	37	chr4	20706083	20706083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacttttttttttttaaaCtgcaggagtgaaagggaagc	9	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20706083	A	A	20706083	1	1	106	0	1	0	0	0	0	0	0	0	11465	580	20	3		3	PACRGL	4	20706083	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	7100127	20706083	170448193	488	103183											
LGI2	55203	broad.mit.edu	37	chr4	25014018	25014018	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccactccagcaccatgcaGttctccatgctgggctgcgc	9	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25014018	A	A	25014018	2	1	106	1	0	0	0	0	0	0	0	1	8824	1020	36	4		4	LGI2	4	25014018	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	4307935	25014018	166140258	489	103184											
UGDH	7358	broad.mit.edu	37	chr4	39515801	39515801	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaccacttcttttagtcCtggctaaaaagaaaaaagaa	5	8	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39515801	A	A	39515801	4	1	106	1	0	0	0	0	0	1	0	0	17066	690	24	2	1358	2	UGDH	4	39515801	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	14501783	39515801	151638475	490	103185											
RBM47	54502	broad.mit.edu	37	chr4	40440430	40440430	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttcctcgcgcttcttcaTcttggggatcccgccgatga	10	13	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40440430	A	A	40440430	3	1	106	1	0	0	0	0	1	0	0	0	13249	1435	50	5	1316	5	RBM47	4	40440430	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	924629	40440430	150713846	491	103186											
PHOX2B	8929	broad.mit.edu	37	chr4	41750472	41750472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggcagccggacgtggcCccaaaagtggtccttatcgg	15	11	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41750472	A	A	41750472	2	1	106	1	0	0	0	0	0	0	0	1	11954	610	22	2		2	PHOX2B	4	41750472	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1310042	41750472	149403804	492	103187											
GABRA2	2555	broad.mit.edu	37	chr4	46334591	46334591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaattaccccccactccCcattatgtgaagtaaaaata	4	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46334591	A	A	46334591	1	1	106	0	1	0	0	0	0	0	0	0	6221	638	22	2		2	GABRA2	4	46334591	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4584119	46334591	144819685	493	103188											
COX7B2	170712	broad.mit.edu	37	chr4	46737329	46737329	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccgctttgaatgtctggcTacatcaccccttggagtggt	10	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46737329	A	A	46737329	1	1	106	0	1	0	0	0	0	0	0	0	3815	1537	53	5		5	COX7B2	4	46737329	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	402738	46737329	144416947	494	103189											
GABRB1	2560	broad.mit.edu	37	chr4	47427876	47427876	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgccctggaccggcacggGgtacccagcaaggggcgcat	16	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47427876	T	T	47427876	2	4	106	1	0	0	0	0	0	0	0	1	6226	1219	43	2		2	GABRB1	4	47427876	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	690547	47427876	143726400	495	103190											
TXK	7294	broad.mit.edu	37	chr4	48069580	48069580	+	3'UTR	SNP	C	A	A													agatattcaccataagtgacCccatatggtgaagatattca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48069580	A	A	48069580	1	1	106	0	1	0	0	0	0	0	0	0	16912	638	22	2		2	TXK	4	48069580	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	641704	48069580	143084696	496	103191	451	2									
TXK	7294	broad.mit.edu	37	chr4	48069582	48069582	+	3'UTR	SNP	C	A	A													atattcaccataagtgacccCatatggtgaagatattcaca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48069582	A	A	48069582	1	1	106	0	1	0	0	0	0	0	0	0	16912	609	21	2		2	TXK	4	48069582	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	2	48069582	143084694	497	103192	451	2									
TXK	7294	broad.mit.edu	37	chr4	48114498	48114498	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggggaggcagtggctttCgttttgacggctgcacacgg	18	8	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48114498	T	T	48114498	3	4	106	1	0	0	0	0	1	0	0	0	16912	884	31	4	1425	4	TXK	4	48114498	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	44916	48114498	143039778	498	103193											
FRYL	285527	broad.mit.edu	37	chr4	48592645	48592645	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaatatgaaactgtattaCaaagcaacatttaatttcaa	4	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48592645	G	G	48592645	1	3	106	0	1	0	0	0	0	0	0	0	6124	493	17	4		4	FRYL	4	48592645	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	478147	48592645	142561631	499	103194											
PDGFRA	5156	broad.mit.edu	37	chr4	55124843	55124843	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgttaatattttctgtTgtgcaaaacacaaagagaac	7	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55124843	A	A	55124843	1	1	106	0	1	0	0	0	0	0	0	0	11755	1827	63	5		5	PDGFRA	4	55124843	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	6532198	55124843	136029433	500	103195											
KIAA1211	57482	broad.mit.edu	37	chr4	57182405	57182405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccaagagcggaagcaaGccccttccacccggagggac	11	17	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57182405	T	T	57182405	3	4	106	1	0	0	0	0	1	0	0	0	8285	971	34	3	2755	3	KIAA1211	4	57182405	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2057562	57182405	133971871	501	103196											
KIAA1211	57482	broad.mit.edu	37	chr4	57193736	57193736	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataaatacatagtttatcaTctgttaattaaaaagaaaat	4	3	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57193736	C	C	57193736	1	2	106	0	1	0	0	0	0	0	0	0	8285	1450	50	5		5	KIAA1211	4	57193736	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	11331	57193736	133960540	502	103197											
EPHA5	2044	broad.mit.edu	37	chr4	66230783	66230783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgttaggatgatcaaactGtcccatgatacttgcttcac	8	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66230783	T	T	66230783	3	4	106	1	0	0	0	0	1	0	0	0	5212	1386	48	3	953	3	EPHA5	4	66230783	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	9037047	66230783	124923493	503	103198											
STAP1	26228	broad.mit.edu	37	chr4	68436840	68436840	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagagttgagaggaactacTcttttcttttataccgacaa	7	8	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68436840	A	A	68436840	2	1	106	1	0	0	0	0	0	0	0	1	15370	1538	54	5		5	STAP1	4	68436840	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	2206057	68436840	122717436	504	103199											
UGT2A3	79799	broad.mit.edu	37	chr4	69811061	69811061	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggtttacagtgcaatcctCcaacaaactcaaagttaggt	7	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69811061	T	T	69811061	3	4	106	1	0	0	0	0	1	0	0	0	17081	855	30	4	776	4	UGT2A3	4	69811061	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1374221	69811061	121343215	505	103200											
UGT2B11	10720	broad.mit.edu	37	chr4	70070510	70070510	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttcagatgaaaaagcacGtacttgtttaggagatgtaa	10	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70070510	A	A	70070510	1	1	106	0	1	0	0	0	0	0	0	0	17083	1160	40	4		4	UGT2B11	4	70070510	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	259449	70070510	121083766	506	103201											
UGT2B11	10720	broad.mit.edu	37	chr4	70071072	70071072	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accatattcttttcccctagGactggaaaataaatacaaag	5	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70071072	T	T	70071072	1	4	106	0	1	0	0	0	0	0	0	0	17083	1189	41	3		3	UGT2B11	4	70071072	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	562	70071072	121083204	507	103202											
UGT2A1	10941	broad.mit.edu	37	chr4	70513291	70513291	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaccttccattggccaaatCaaaacattcccaccaagagt	4	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70513291	A	A	70513291	3	1	106	1	0	0	0	0	1	0	0	0	17079	825	29	3	1535	3	UGT2A1	4	70513291	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	442219	70513291	120640985	508	103203											
CSN3	1448	broad.mit.edu	37	chr4	71114727	71114727	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgcagtgccatgagaatGatgaaagaccattctatcag	9	7	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71114727	C	C	71114727	3	2	106	1	0	0	0	0	1	0	0	0	3983	1290	45	4	110	4	CSN3	4	71114727	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	601436	71114727	120039549	509	103204											
C4orf35	85438	broad.mit.edu	37	chr4	71200714	71200714	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctagagataccactgagtCcagaagcaagacctgtgaga	11	10	0	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71200714	A	A	71200714	1	1	106	0	1	0	0	0	0	0	0	0	2288	870	30	3		3	C4orf35	4	71200714	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	85987	71200714	119953562	510	103205											
GC	2638	broad.mit.edu	37	chr4	72618403	72618403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtaaggtcttactacatGtatttattttatacaaattt	4	4	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72618403	T	T	72618403	1	4	106	0	1	0	0	0	0	0	0	0	6344	1392	48	3		3	GC	4	72618403	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1417689	72618403	118535873	511	103206											
C4orf22	255119	broad.mit.edu	37	chr4	81307881	81307881	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatttgtggagcttcatgcCggagtgggagaggacatggg	18	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81307881	T	T	81307881	1	4	106	0	1	0	0	0	0	0	0	0	2278	667	23	4		4	C4orf22	4	81307881	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	8689478	81307881	109846395	512	103207											
C4orf22	255119	broad.mit.edu	37	chr4	81866088	81866088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaattcttaatgtggacCcaaaggtaattcttctttta	6	6	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81866088	A	A	81866088	3	1	106	1	0	0	0	0	1	0	0	0	2278	623	22	2	619	2	C4orf22	4	81866088	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	558207	81866088	109288188	513	103208											
HNRNPD	3184	broad.mit.edu	37	chr4	83278025	83278025	+	Frame_Shift_Del	DEL	C	-	-													tgttgctgatattgttccttCgacatggctacttttatttc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83278025	-	-	83278025	7	5	106	1	0	1	0	1	0	0	0	0	7331	871	31	0	302	0	HNRNPD	4	83278025	Frame_Shift_Del	DEL	C	TCGA-44-2656-01A-02D-0969-08	1411937	83278025	107876251	514	103209											
SEC31A	22872	broad.mit.edu	37	chr4	83740390	83740390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgttgtgtaaaccactgGtgattgttggtgaaagctga	12	5	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83740390	T	T	83740390	3	4	106	1	0	0	0	0	1	0	0	0	14111	1261	44	3	166	3	SEC31A	4	83740390	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	462365	83740390	107413886	515	103210											
HPSE	10855	broad.mit.edu	37	chr4	84240262	84240262	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggtcattgttagatcaTgaatgattgatttatctttc	8	4	3	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84240262	A	A	84240262	1	1	106	0	1	0	0	0	0	0	0	0	7411	1479	51	5		5	HPSE	4	84240262	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	499872	84240262	106914014	516	103211											
NKX6-1	4825	broad.mit.edu	37	chr4	85417018	85417018	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgagaaccaataaacaaCgagagagggggaaaaacaat	11	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85417018	G	G	85417018	1	3	106	0	1	0	0	0	0	0	0	0	10552	551	19	4		4	NKX6-1	4	85417018	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1176756	85417018	105737258	517	103212											
AFF1	4299	broad.mit.edu	37	chr4	88035722	88035722	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccagcaaagccccccgGgccccacccgaagcccccca	8	23	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88035722	T	T	88035722	2	4	106	1	0	0	0	0	0	0	0	1	356	1219	43	2		2	AFF1	4	88035722	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	2618704	88035722	103118554	518	103213											
MEPE	56955	broad.mit.edu	37	chr4	88767150	88767150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtttcattaccctcctgCaccctcaaaagagaaaagaa	6	11	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88767150	A	A	88767150	3	1	106	1	0	0	0	0	1	0	0	0	9571	710	25	3	1140	3	MEPE	4	88767150	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	731428	88767150	102387126	519	103214											
MEPE	56955	broad.mit.edu	37	chr4	88767161	88767161	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accctcctgcaccctcaaaaGagaaaagaaaagaaggcagt	8	11	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88767161	C	C	88767161	3	2	106	1	0	0	0	0	1	0	0	0	9571	943	33	4	1151	4	MEPE	4	88767161	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	11	88767161	102387115	520	103215											
GRID2	2895	broad.mit.edu	37	chr4	93511469	93511469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatttattttggttttttGgttcaattcaagtggcaatg	9	3	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93511469	T	T	93511469	1	4	106	0	1	0	0	0	0	0	0	0	6838	1363	47	2		2	GRID2	4	93511469	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4744308	93511469	97642807	521	103216											
GRID2	2895	broad.mit.edu	37	chr4	94690278	94690278	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacagccaccatcctacagAggtgggattataaatggatg	11	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94690278	T	T	94690278	1	4	106	0	1	0	0	0	0	0	0	0	6838	319	11	5		5	GRID2	4	94690278	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1178809	94690278	96463998	522	103217											
SMARCAD1	56916	broad.mit.edu	37	chr4	95210624	95210624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctactttctgacctacagGtgatgaagggagtatgccag	12	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95210624	T	T	95210624	3	4	106	1	0	0	0	0	1	0	0	0	14886	1275	44	3	3116	3	SMARCAD1	4	95210624	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	520346	95210624	95943652	523	103218											
C4orf37	285555	broad.mit.edu	37	chr4	98480220	98480220	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatttatgtcacattatatCagcagccatttcaccaatga	4	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98480220	T	T	98480220	3	4	106	1	0	0	0	0	1	0	0	0	2290	826	29	4	14	4	C4orf37	4	98480220	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3269596	98480220	92674056	524	103219											
METAP1	23173	broad.mit.edu	37	chr4	99970129	99970129	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgtattcactagagtaatCtcttagctgtaatagataga	7	5	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99970129	T	T	99970129	1	4	106	0	1	0	0	0	0	0	0	0	9579	928	32	4		4	METAP1	4	99970129	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1489909	99970129	91184147	525	103220											
RG9MTD2	93587	broad.mit.edu	37	chr4	100479469	100479469	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaaatcatcaggttaaatCatatgaaattgtcacttctg	5	6	5	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100479469	A	A	100479469	1	1	106	0	1	0	0	0	0	0	0	0	13380	841	29	3		3	RG9MTD2	4	100479469	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	509340	100479469	90674807	526	103221											
AGXT2L1	64850	broad.mit.edu	37	chr4	109670480	109670480	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccaccgggtggccgttgcCcatcggttttcccattgtga	12	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109670480	T	T	109670480	3	4	106	1	0	0	0	0	1	0	0	0	406	623	22	4	682	4	AGXT2L1	4	109670480	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	9191011	109670480	81483796	527	103222											
C4orf21	55345	broad.mit.edu	37	chr4	113486363	113486363	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttccagcgtctggtgcgaGaaattgctcaggactttaaa	10	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113486363	A	A	113486363	1	1	106	0	1	0	0	0	0	0	0	0	2277	957	33	4		4	C4orf21	4	113486363	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3815883	113486363	77667913	528	103223											
NDST4	64579	broad.mit.edu	37	chr4	115773883	115773883	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaattggctatttttacctGttttttgtggaccaattact	6	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115773883	C	C	115773883	3	2	106	1	0	0	0	0	1	0	0	0	10353	1377	48	4	832	4	NDST4	4	115773883	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2287520	115773883	75380393	529	103224											
TRAM1L1	133022	broad.mit.edu	37	chr4	118006108	118006108	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttccatataagagttgggtCtgacaggcagttttcagaga	11	7	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118006108	A	A	118006108	3	1	106	1	0	0	0	0	1	0	0	0	16576	913	32	3	671	3	TRAM1L1	4	118006108	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2232225	118006108	73148168	530	103225											
NDST3	9348	broad.mit.edu	37	chr4	119059181	119059181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaagataaatctttacacGctccaattaacatttgcttg	4	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119059181	T	T	119059181	1	4	106	0	1	0	0	0	0	0	0	0	10352	1102	38	3		3	NDST3	4	119059181	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1053073	119059181	72095095	531	103226											
NDST3	9348	broad.mit.edu	37	chr4	119158234	119158234	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcccagtcccatctaatgtCactaccgactttttgtttga	5	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119158234	A	A	119158234	2	1	106	1	0	0	0	0	0	0	0	1	10352	813	29	3		3	NDST3	4	119158234	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	99053	119158234	71996042	532	103227											
SEC24D	9871	broad.mit.edu	37	chr4	119745614	119745614	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagccataacttttcttaTtgctttgtttcctagggcag	7	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119745614	C	C	119745614	1	2	106	0	1	0	0	0	0	0	0	0	14110	1508	52	5		5	SEC24D	4	119745614	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	587380	119745614	71408662	533	103228											
SYNPO2	171024	broad.mit.edu	37	chr4	119948371	119948371	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagatgcgggactgcccCgggtggaagtgatcctcgac	16	11	0	2	rs35676119		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119948371	T	T	119948371	3	4	106	1	0	0	0	0	1	0	0	0	15576	643	23	4	857	4	SYNPO2	4	119948371	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	202757	119948371	71205905	534	103229											
SYNPO2	171024	broad.mit.edu	37	chr4	119951975	119951975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgccagcaaaaagaacagGaatattgcaggaggccaaaa	11	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119951975	T	T	119951975	3	4	106	1	0	0	0	0	1	0	0	0	15576	1174	41	3	2059	3	SYNPO2	4	119951975	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3604	119951975	71202301	535	103230											
PRDM5	11107	broad.mit.edu	37	chr4	121631535	121631535	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgcttctggctgaaggCcttgctgcactctgagcact	11	14	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121631535	T	T	121631535	3	4	106	1	0	0	0	0	1	0	0	0	12566	739	26	4	243	4	PRDM5	4	121631535	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1679560	121631535	69522741	536	103231											
PRDM5	11107	broad.mit.edu	37	chr4	121737750	121737750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaagacaaccagcaaagCggaacaggaagaaatggtga	11	8	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121737750	A	A	121737750	1	1	106	0	1	0	0	0	0	0	0	0	12566	783	27	3		3	PRDM5	4	121737750	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	106215	121737750	69416526	537	103232											
KIAA1109	84162	broad.mit.edu	37	chr4	123260563	123260563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcaaaactggaataccaGgtatagataatgttctttta	7	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123260563	T	T	123260563	3	4	106	1	0	0	0	0	1	0	0	0	8278	1014	35	2	12630	2	KIAA1109	4	123260563	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1522813	123260563	67893713	538	103233											
INTU	27152	broad.mit.edu	37	chr4	128632153	128632153	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattactcctacccttgaaGaggtggcacagctaagtggc	10	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128632153	T	T	128632153	4	4	106	1	0	0	0	0	0	1	0	0	7856	943	33	3	2509	3	INTU	4	128632153	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	5371590	128632153	62522123	539	103234											
PCDH10	57575	broad.mit.edu	37	chr4	134084177	134084177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaatgtaaagctctggGccactcagatcggtgctgga	14	8	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134084177	T	T	134084177	3	4	106	1	0	0	0	0	1	0	0	0	11601	1203	42	3	2917	3	PCDH10	4	134084177	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	5452024	134084177	57070099	540	103235											
PCDH18	54510	broad.mit.edu	37	chr4	138450002	138450002	+	Intron	DEL	C	-	-													ccaaatagacagaactgattCccggaaacaagcctccaaac							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138450002	-	-	138450002	6	5	106	0	1	1	0	1	0	0	0	0	11607	870	30	0		0	PCDH18	4	138450002	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	4365825	138450002	52704274	541	103236											
ELF2	1998	broad.mit.edu	37	chr4	139988852	139988852	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattaccttttccttctcttGgtttcttctttatacctaac	2	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139988852	C	C	139988852	3	2	106	1	0	0	0	0	1	0	0	0	5096	1348	47	4	1198	4	ELF2	4	139988852	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1538850	139988852	51165424	542	103237											
MAML3	55534	broad.mit.edu	37	chr4	140809943	140809943	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttctaactgttgctagtcTagcagcaagtgtttaaacat	8	8	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140809943	C	C	140809943	1	2	106	0	1	0	0	0	0	0	0	0	9299	1537	53	5		5	MAML3	4	140809943	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	821091	140809943	50344333	543	103238											
GYPA	2993	broad.mit.edu	37	chr4	145038156	145038157	+	Intron	INS	-	A	A													aaatgaccatatagcaactgINSaaaaataagacagataacat							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145038157	A	A	145038156	6	5	106	0	1	1	1	0	0	0	0	0	6973	1305	45	0		0	GYPA	4	145038156	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	4228213	145038156	46116120	544	103239											
SLC10A7	84068	broad.mit.edu	37	chr4	147425062	147425062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaggcggaggcatgcaaCctactgtctgcaaactgaaa	10	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147425062	A	A	147425062	3	1	106	1	0	0	0	0	1	0	0	0	14492	507	18	3	768	3	SLC10A7	4	147425062	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2386906	147425062	43729214	545	103240											
EDNRA	1909	broad.mit.edu	37	chr4	148427647	148427647	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagttttgaacctgttgcTaatcaatacaatactgaatg	7	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148427647	A	A	148427647	1	1	106	0	1	0	0	0	0	0	0	0	4959	1537	53	5		5	EDNRA	4	148427647	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1002585	148427647	42726629	546	103241											
PET112L	5188	broad.mit.edu	37	chr4	152682170	152682170	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggtcaggtgactcagcctCactatgccgcgaggctccct	11	14	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152682170	T	T	152682170	1	4	106	0	1	0	0	0	0	0	0	0	11828	841	29	4		4	PET112L	4	152682170	5'Flank	SNP	C	TCGA-44-2656-01A-02D-0969-08	4254523	152682170	38472106	547	103242											
TIGD4	201798	broad.mit.edu	37	chr4	153691700	153691700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagggtctactggtacacCtgtagcttctacaggttgag	12	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153691700	A	A	153691700	3	1	106	1	0	0	0	0	1	0	0	0	16021	681	24	2	1085	2	TIGD4	4	153691700	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1009530	153691700	37462576	548	103243											
ARFIP1	27236	broad.mit.edu	37	chr4	153802270	153802270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgacccagcttttccagatGgtacatacccaaaggcaact	7	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153802270	T	T	153802270	3	4	106	1	0	0	0	0	1	0	0	0	856	1348	47	2	585	2	ARFIP1	4	153802270	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	110570	153802270	37352006	549	103244											
FHDC1	85462	broad.mit.edu	37	chr4	153889217	153889217	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaacatccagcgggatggtGaactttgtcagcagatggaa	12	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153889217	A	A	153889217	3	1	106	1	0	0	0	0	1	0	0	0	5933	1291	45	4	1220	4	FHDC1	4	153889217	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	86947	153889217	37265059	550	103245											
DCHS2	54798	broad.mit.edu	37	chr4	155250575	155250575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagtatgctttgccacaCcaagactgatgtgataaatt	7	7	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155250575	A	A	155250575	1	1	106	0	1	0	0	0	0	0	0	0	4321	522	18	3		3	DCHS2	4	155250575	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1361358	155250575	35903701	551	103246											
DCHS2	54798	broad.mit.edu	37	chr4	155298498	155298498	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttgcccatcatgagggtcGatccggaatgcctgaggtgc	13	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155298498	T	T	155298498	2	4	106	1	0	0	0	0	0	0	0	1	4321	1048	37	3		3	DCHS2	4	155298498	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	47923	155298498	35855778	552	103247											
FGB	2244	broad.mit.edu	37	chr4	155490753	155490753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaatggaggactggaaagGagacaaagtaaaggctcact	13	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155490753	A	A	155490753	3	1	106	1	0	0	0	0	1	0	0	0	5888	1174	41	4	1072	4	FGB	4	155490753	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	192255	155490753	35663523	553	103248											
LRAT	9227	broad.mit.edu	37	chr4	155670250	155670250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcatacactacccttcctGcaatttttattccattcttc	1	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155670250	T	T	155670250	3	4	106	1	0	0	0	0	1	0	0	0	9017	1319	46	3	661	3	LRAT	4	155670250	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	179497	155670250	35484026	554	103249											
NPY2R	4887	broad.mit.edu	37	chr4	156135962	156135962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgccttccagcttgccGttgacattgacagccaggtc	9	14	0	2	rs147783618		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156135962	T	T	156135962	3	4	106	1	0	0	0	0	1	0	0	0	10704	1145	40	3	873	3	NPY2R	4	156135962	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	465712	156135962	35018314	555	103250											
RXFP1	59350	broad.mit.edu	37	chr4	159494026	159494026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacggtgagagaaaggagCagaaaggactgaaggtgaag	17	4	1	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159494026	A	A	159494026	1	1	106	0	1	0	0	0	0	0	0	0	13870	725	25	3		3	RXFP1	4	159494026	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3358064	159494026	31660250	556	103251											
RAPGEF2	9693	broad.mit.edu	37	chr4	160273941	160273941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattcgtcttttgactcaGtgccagtctcactgcacgat	8	12	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160273941	T	T	160273941	3	4	106	1	0	0	0	0	1	0	0	0	13152	1029	36	3	3569	3	RAPGEF2	4	160273941	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	779915	160273941	30880335	557	103252											
FSTL5	56884	broad.mit.edu	37	chr4	162954855	162954855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatatgtaagtaaatatGtgatcaactgtttcatataa	5	4	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162954855	T	T	162954855	1	4	106	0	1	0	0	0	0	0	0	0	6140	1392	48	3		3	FSTL5	4	162954855	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2680914	162954855	28199421	558	103253											
TKTL2	84076	broad.mit.edu	37	chr4	164393898	164393898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttgcacggcccagtttaGccagagccaaaccatatgtt	8	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164393898	T	T	164393898	3	4	106	1	0	0	0	0	1	0	0	0	16059	971	34	3	895	3	TKTL2	4	164393898	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1439043	164393898	26760378	559	103254											
ANP32C	23520	broad.mit.edu	37	chr4	165118379	165118379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcctcgtcatccaggCcctccacgtggtcctcaata	6	19	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118379	A	A	165118379	3	1	106	1	0	0	0	0	1	0	0	0	707	739	26	3	222	3	ANP32C	4	165118379	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	724481	165118379	26035897	560	103255											
CPE	1363	broad.mit.edu	37	chr4	166326063	166326063	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgacagcagcgatttcActgactgggagaggagatgt	14	7	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166326063	T	T	166326063	1	4	106	0	1	0	0	0	0	0	0	0	3831	174	6	5		5	CPE	4	166326063	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1207684	166326063	24828213	561	103256											
TLL1	7092	broad.mit.edu	37	chr4	166981296	166981296	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttgcaccaacccagtacAgaatttctgtgaagtttgag	10	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166981296	T	T	166981296	4	4	106	1	0	0	0	0	0	1	0	0	16068	180	7	5	2021	5	TLL1	4	166981296	Nonsense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	655233	166981296	24172980	562	103257											
ANXA10	11199	broad.mit.edu	37	chr4	169105621	169105621	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcaggaagaagagaaaaTgactacagaaaaggggtgtg	13	4	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169105621	C	C	169105621	1	2	106	0	1	0	0	0	0	0	0	0	715	1479	51	5		5	ANXA10	4	169105621	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2124325	169105621	22048655	563	103258											
AADAT	51166	broad.mit.edu	37	chr4	170987529	170987529	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctacttttacagatgctaCtgtttatcatgaggacgaat	7	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170987529	T	T	170987529	1	4	106	0	1	0	0	0	0	0	0	0	14	580	20	4		4	AADAT	4	170987529	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1881908	170987529	20166747	564	103259											
GALNTL6	442117	broad.mit.edu	37	chr4	173803857	173803857	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctgaccactaaaacatatCttgaattttacttttttccc	3	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173803857	T	T	173803857	1	4	106	0	1	0	0	0	0	0	0	0	6287	928	32	4		4	GALNTL6	4	173803857	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2816328	173803857	17350419	565	103260											
MORF4	10934	broad.mit.edu	37	chr4	174537962	174537962	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgtcctttatggcaacCtttacacactttgcatcata	4	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174537962	A	A	174537962	1	1	106	0	1	0	0	0	0	0	0	0	9799	696	24	2		2	MORF4	4	174537962	5'Flank	SNP	C	TCGA-44-2656-01A-02D-0969-08	734105	174537962	16616314	566	103261											
ASB5	140458	broad.mit.edu	37	chr4	177136684	177136684	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttagcatatttttatatGaactattccttaagcaaaag	4	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177136684	T	T	177136684	1	4	106	0	1	0	0	0	0	0	0	0	1030	1305	45	3		3	ASB5	4	177136684	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	2598722	177136684	14017592	567	103262											
ODZ3	55714	broad.mit.edu	37	chr4	183664646	183664646	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaggttgagtctgatgTactgatttattcatagaaaa	8	3	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183664646	A	A	183664646	1	1	106	0	1	0	0	0	0	0	0	0	10931	1653	57	5		5	ODZ3	4	183664646	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	6527962	183664646	7489630	568	103263											
CCDC111	201973	broad.mit.edu	37	chr4	185593278	185593278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggctagaccttaagatGcggtgtgtggagaagatcca	13	8	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185593278	T	T	185593278	1	4	106	0	1	0	0	0	0	0	0	0	2774	1334	46	3		3	CCDC111	4	185593278	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1928632	185593278	5560998	569	103264											
ACSL1	2180	broad.mit.edu	37	chr4	185697670	185697670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctggtgacttccacccCacacctctggcctcgttcca	7	18	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185697670	A	A	185697670	3	1	106	1	0	0	0	0	1	0	0	0	177	594	21	2	1432	2	ACSL1	4	185697670	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	104392	185697670	5456606	570	103265											
TRIML1	339976	broad.mit.edu	37	chr4	189068505	189068505	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaccctctcaccatctgCtcactgaacagccacgtctg	6	17	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189068505	A	A	189068505	4	1	106	1	0	0	0	0	0	1	0	0	16675	805	28	3	1408	3	TRIML1	4	189068505	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3370835	189068505	2085771	571	103266											
TUBB4Q	56604	broad.mit.edu	37	chr4	190904302	190904302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggtagcagacaccagGtggttcaggtcaccataggt	12	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190904302	T	T	190904302	3	4	106	1	0	0	0	0	1	0	0	0	16885	1252	44	3	626	3	TUBB4Q	4	190904302	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1835797	190904302	249974	572	103267											
TRIP13	9319	broad.mit.edu	37	chr5	908072	908072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagtgtggtccctgcaCgttgacactaaaagggtgtt	13	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	908072	A	A	908072	1	1	106	0	1	0	0	0	0	0	0	0	16682	551	19	3		3	TRIP13	5	908072	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08		908072	180007188	573	103268											
SLC6A19	340024	broad.mit.edu	37	chr5	1212589	1212589	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccatccgcggcatcgagaCcaccgggaaggtactgcatg	12	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1212589	T	T	1212589	3	4	106	1	0	0	0	0	1	0	0	0	14796	507	18	4	667	4	SLC6A19	5	1212589	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	304517	1212589	179702671	574	103269											
SLC6A19	340024	broad.mit.edu	37	chr5	1213592	1213592	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaggccgtgtacatcacCtccacgctgccctatgtcgt	9	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1213592	A	A	1213592	2	1	106	1	0	0	0	0	0	0	0	1	14796	668	24	2		2	SLC6A19	5	1213592	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1003	1213592	179701668	575	103270											
SLC6A19	340024	broad.mit.edu	37	chr5	1213974	1213974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctgaccaccccaatagCctcgaccctccccgcctccc	5	23	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1213974	A	A	1213974	1	1	106	0	1	0	0	0	0	0	0	0	14796	754	26	3		3	SLC6A19	5	1213974	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	382	1213974	179701286	576	103271											
ADAMTS16	170690	broad.mit.edu	37	chr5	5319167	5319167	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagactacttccactggtgCtacctggtaccccagcacgg	9	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5319167	A	A	5319167	4	1	106	1	0	0	0	0	0	1	0	0	261	805	28	3	3681	3	ADAMTS16	5	5319167	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4105193	5319167	175596093	577	103272											
NSUN2	54888	broad.mit.edu	37	chr5	6611754	6611754	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtatttattcaagttactCacacgtgaatgctttgaaac	6	7	2	2	rs72127984		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6611754	T	T	6611754	1	4	106	0	1	0	0	0	0	0	0	0	10773	841	29	4		4	NSUN2	5	6611754	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1292587	6611754	174303506	578	103273											
ADCY2	108	broad.mit.edu	37	chr5	7521028	7521028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggtgggtgcacctccaCatccatggagaatgactttc	12	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7521028	A	A	7521028	1	1	106	0	1	0	0	0	0	0	0	0	294	493	17	3		3	ADCY2	5	7521028	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	909274	7521028	173394232	579	103274											
ADCY2	108	broad.mit.edu	37	chr5	7767039	7767039	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttcctctctggtatcaatCcctgagtggttctgaattta	7	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7767039	A	A	7767039	1	1	106	0	1	0	0	0	0	0	0	0	294	870	30	3		3	ADCY2	5	7767039	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	246011	7767039	173148221	580	103275											
SEMA5A	9037	broad.mit.edu	37	chr5	9108441	9108441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaggaaactaattagtgCcacttgaaaccactgacgtt	8	9	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9108441	A	A	9108441	1	1	106	0	1	0	0	0	0	0	0	0	14150	754	26	3		3	SEMA5A	5	9108441	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1341402	9108441	171806819	581	103276											
CTNND2	1501	broad.mit.edu	37	chr5	11346694	11346694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgggccgtgctggctgCctgtgcgctgcaaggggacg	18	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11346694	A	A	11346694	3	1	106	1	0	0	0	0	1	0	0	0	4054	739	26	3	2315	3	CTNND2	5	11346694	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2238253	11346694	169568566	582	103277											
ANKH	56172	broad.mit.edu	37	chr5	14798452	14798452	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttttccatattttgtattCcttgttgatcactcattctt	3	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14798452	A	A	14798452	1	1	106	0	1	0	0	0	0	0	0	0	627	870	30	3		3	ANKH	5	14798452	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3451758	14798452	166116808	583	103278											
PRDM9	56979	broad.mit.edu	37	chr5	23522648	23522648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctaaataatgtgaatgcCaagctctttctgaagctctt	9	8	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23522648	A	A	23522648	1	1	106	0	1	0	0	0	0	0	0	0	12569	609	21	2		2	PRDM9	5	23522648	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	8724196	23522648	157392612	584	103279											
PDZD2	23037	broad.mit.edu	37	chr5	31908857	31908857	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catccttagtaatttcaaaaAcgaccagttctggccgggcg	9	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31908857	G	G	31908857	1	3	106	0	1	0	0	0	0	0	0	0	11795	58	2	5		5	PDZD2	5	31908857	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	8386209	31908857	149006403	585	103280											
ADAMTS12	81792	broad.mit.edu	37	chr5	33631090	33631090	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcccccaggattcctccGtacttaggacccccaagtgt	7	17	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33631090	C	C	33631090	1	2	106	0	1	0	0	0	0	0	0	0	257	1160	40	4		4	ADAMTS12	5	33631090	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1722233	33631090	147284170	586	103281											
ADAMTS12	81792	broad.mit.edu	37	chr5	33649115	33649115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggagttgtttaggattcCctttaccttcagcctttcat	8	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33649115	A	A	33649115	1	1	106	0	1	0	0	0	0	0	0	0	257	638	22	2		2	ADAMTS12	5	33649115	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	18025	33649115	147266145	587	103282											
C1QTNF3	114899	broad.mit.edu	37	chr5	34033348	34033348	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctcgaacatcctgattcCtggccccttttggtcaggca	10	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34033348	A	A	34033348	1	1	106	0	1	0	0	0	0	0	0	0	1984	696	24	2		2	C1QTNF3	5	34033348	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	384233	34033348	146881912	588	103283											
RAI14	26064	broad.mit.edu	37	chr5	34813772	34813772	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtcctacccaggtaaaaAcaaaagcaaaccaacaatca	4	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34813772	T	T	34813772	1	4	106	0	1	0	0	0	0	0	0	0	13116	58	2	5		5	RAI14	5	34813772	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	780424	34813772	146101488	589	103284											
SPEF2	79925	broad.mit.edu	37	chr5	35691149	35691149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttttacagaacatggttgGagagtgggccttaccagaag	12	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35691149	T	T	35691149	3	4	106	1	0	0	0	0	1	0	0	0	15153	1174	41	3	1598	3	SPEF2	5	35691149	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	877377	35691149	145224111	590	103285											
SPEF2	79925	broad.mit.edu	37	chr5	35793323	35793323	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactggcggaagttcctGttagtaacctcaatgccttg	12	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35793323	T	T	35793323	2	4	106	1	0	0	0	0	0	0	0	1	15153	1364	48	3		3	SPEF2	5	35793323	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	102174	35793323	145121937	591	103286											
UGT3A2	167127	broad.mit.edu	37	chr5	36066766	36066766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgagtatccgggacgcgCctgtctgggaattctccggc	15	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36066766	A	A	36066766	1	1	106	0	1	0	0	0	0	0	0	0	17090	754	26	3		3	UGT3A2	5	36066766	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	273443	36066766	144848494	592	103287											
SKP2	6502	broad.mit.edu	37	chr5	36163895	36163895	+	Intron	DEL	G	-	-													cctttggcaaacgtaggggaGgaagaggagaggaaggttat							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36163895	-	-	36163895	6	5	106	0	1	1	0	1	0	0	0	0	14475	1015	35	0		0	SKP2	5	36163895	Intron	DEL	G	TCGA-44-2656-01A-02D-0969-08	97129	36163895	144751365	593	103288											
SLC1A3	6507	broad.mit.edu	37	chr5	36686206	36686206	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaacgtactgggagactcCctgggagctgggattgtgga	15	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36686206	A	A	36686206	2	1	106	1	0	0	0	0	0	0	0	1	14546	610	22	2		2	SLC1A3	5	36686206	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	522311	36686206	144229054	594	103289											
C5orf42	65250	broad.mit.edu	37	chr5	37211203	37211203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taataaatggcaacatggtgCttcacaatggtgagataagt	10	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37211203	A	A	37211203	1	1	106	0	1	0	0	0	0	0	0	0	2324	812	28	3		3	C5orf42	5	37211203	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	524997	37211203	143704057	595	103290											
GDNF	2668	broad.mit.edu	37	chr5	37815930	37815930	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatattttgtcgtacgttgtCtcagctgcatcgcaagagcc	9	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37815930	A	A	37815930	3	1	106	1	0	0	0	0	1	0	0	0	6386	912	32	3	179	3	GDNF	5	37815930	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	604727	37815930	143099330	596	103291											
RICTOR	253260	broad.mit.edu	37	chr5	38947422	38947422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaatgtaatcatctgaacCcccatatgtggcactggaca	7	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38947422	A	A	38947422	3	1	106	1	0	0	0	0	1	0	0	0	13467	623	22	2	896	2	RICTOR	5	38947422	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1131492	38947422	141967838	597	103292											
RICTOR	253260	broad.mit.edu	37	chr5	39021164	39021164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaagttattcagatggcCtagctttctcatatttgata	7	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39021164	A	A	39021164	3	1	106	1	0	0	0	0	1	0	0	0	13467	681	24	2	5098	2	RICTOR	5	39021164	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	73742	39021164	141894096	598	103293											
FYB	2533	broad.mit.edu	37	chr5	39130755	39130755	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattaagttaatctatgaatTacttagctatgaggaagaga	8	3	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39130755	G	G	39130755	1	3	106	0	1	0	0	0	0	0	0	0	6184	1769	61	5		5	FYB	5	39130755	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	109591	39130755	141784505	599	103294											
C7	730	broad.mit.edu	37	chr5	40931243	40931243	+	Splice_Site	DEL	T	-	-													tggctgtaccaagactcaggTaggaccatgcaaaactttgt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40931243	-	-	40931243	8	5	106	1	0	1	0	1	0	0	1	0	2400	1652	57	0	150	0	C7	5	40931243	Splice_Site	DEL	T	TCGA-44-2656-01A-02D-0969-08	1800488	40931243	139984017	600	103295											
C7	730	broad.mit.edu	37	chr5	40955834	40955834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taataagaaacagaaggtgtGttatactcatattttagttg	8	3	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40955834	T	T	40955834	1	4	106	0	1	0	0	0	0	0	0	0	2400	1392	48	3		3	C7	5	40955834	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	24591	40955834	139959426	601	103296											
PLCXD3	345557	broad.mit.edu	37	chr5	41510644	41510644	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatcgtgccagtcggcgtGcagcgcgctggtcccagcac	14	16	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41510644	T	T	41510644	1	4	106	0	1	0	0	0	0	0	0	0	12138	1334	46	3		3	PLCXD3	5	41510644	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	554810	41510644	139404616	602	103297											
ZNF131	7690	broad.mit.edu	37	chr5	43143573	43143573	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caactacacgctgtatttgaAgtttcttaatttcctatccc	4	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43143573	T	T	43143573	1	4	106	0	1	0	0	0	0	0	0	0	17847	87	3	5		5	ZNF131	5	43143573	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1632929	43143573	137771687	603	103298											
MGC42105	167359	broad.mit.edu	37	chr5	43232887	43232887	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaagccttggcgatccatGcactgttcagccagtttaca	9	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43232887	C	C	43232887	1	2	106	0	1	0	0	0	0	0	0	0	9645	1334	46	4		4	MGC42105	5	43232887	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	89314	43232887	137682373	604	103299											
HCN1	348980	broad.mit.edu	37	chr5	45396927	45396927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatactggaaaaatccttaCaatggagcatttacaaatgt	7	6	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45396927	A	A	45396927	1	1	106	0	1	0	0	0	0	0	0	0	7062	493	17	3		3	HCN1	5	45396927	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2164040	45396927	135518333	605	103300											
PARP8	79668	broad.mit.edu	37	chr5	50091127	50091127	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcagcaagtcctactccaGtgcccccaagtcatccaaaa	6	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50091127	A	A	50091127	3	1	106	1	0	0	0	0	1	0	0	0	11559	1029	36	4	1350	4	PARP8	5	50091127	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	4694200	50091127	130824133	606	103301											
CCNO	10309	broad.mit.edu	37	chr5	54527229	54527229	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagctcgggggcaggctgcActtctcgcagatctgaacgg	15	12	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54527229	G	G	54527229	3	3	106	1	0	0	0	0	1	0	0	0	2963	159	6	5	29	5	CCNO	5	54527229	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	4436102	54527229	126388031	607	103302											
RAB3C	115827	broad.mit.edu	37	chr5	58120870	58120870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttttcttttaggtcaaCtcaaatcaaaacatactctt	2	9	6	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58120870	A	A	58120870	3	1	106	1	0	0	0	0	1	0	0	0	13041	565	20	3	391	3	RAB3C	5	58120870	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3593641	58120870	122794390	608	103303											
ADAMTS6	11174	broad.mit.edu	37	chr5	64769560	64769560	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctaaagagtcaataccaTaccaaaatcgaagcataaca	6	9	1	1	rs7446121		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64769560	C	C	64769560	1	2	106	0	1	0	0	0	0	0	0	0	270	1421	49	5		5	ADAMTS6	5	64769560	5'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	6648690	64769560	116145700	609	103304											
BDP1	55814	broad.mit.edu	37	chr5	70797393	70797393	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaattaaattcacagaaccAcgtggaaaaagataaaatga	6	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70797393	T	T	70797393	3	4	106	1	0	0	0	0	1	0	0	0	1400	159	6	5	2015	5	BDP1	5	70797393	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	6027833	70797393	110117867	610	103305											
TNPO1	3842	broad.mit.edu	37	chr5	72199499	72199499	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgctgagtttgacaaataCaatatcaacctaagatgtat	6	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72199499	T	T	72199499	1	4	106	0	1	0	0	0	0	0	0	0	16458	493	17	4		4	TNPO1	5	72199499	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1402106	72199499	108715761	611	103306											
RGNEF	64283	broad.mit.edu	37	chr5	73165952	73165952	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcccaggagtttgaagcAgaatcttggagtcttgtggt	14	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73165952	T	T	73165952	2	4	106	1	0	0	0	0	0	0	0	1	13391	175	7	5		5	RGNEF	5	73165952	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	966453	73165952	107749308	612	103307											
IQGAP2	10788	broad.mit.edu	37	chr5	75757446	75757446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatggatgagaggaggcGgcagaacattgcttatgaat	16	4	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75757446	T	T	75757446	3	4	106	1	0	0	0	0	1	0	0	0	7885	1116	39	1	104	1	IQGAP2	5	75757446	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2591494	75757446	105157814	613	103308											
IQGAP2	10788	broad.mit.edu	37	chr5	75918958	75918958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatttgtaacagaaacccaCatccccatcctaccccctga	3	16	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75918958	A	A	75918958	1	1	106	0	1	0	0	0	0	0	0	0	7885	493	17	3		3	IQGAP2	5	75918958	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	161512	75918958	104996302	614	103309											
OTP	23440	broad.mit.edu	37	chr5	76926342	76926342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgggcggcggaccggccGccaggctgcactgggacagc	18	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76926342	T	T	76926342	3	4	106	1	0	0	0	0	1	0	0	0	11404	1087	38	3	256	3	OTP	5	76926342	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1007384	76926342	103988918	615	103310											
BHMT2	23743	broad.mit.edu	37	chr5	78373283	78373283	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtagagcggagcttaggtGctttttttctcttcttcagg	11	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78373283	C	C	78373283	1	2	106	0	1	0	0	0	0	0	0	0	1432	1334	46	4		4	BHMT2	5	78373283	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1446941	78373283	102541977	616	103311											
JMY	133746	broad.mit.edu	37	chr5	78610543	78610543	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actggagaaagatctgcctaGaaaggaggggaatgagaaga	15	4	1	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78610543	T	T	78610543	3	4	106	1	0	0	0	0	1	0	0	0	8027	942	33	3	2562	3	JMY	5	78610543	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	237260	78610543	102304717	617	103312											
RASGRF2	5924	broad.mit.edu	37	chr5	80408586	80408586	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgatttcctcaacacctttCtgcacacctatcgtattttc	3	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80408586	A	A	80408586	3	1	106	1	0	0	0	0	1	0	0	0	13181	912	32	3	2050	3	RASGRF2	5	80408586	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1798043	80408586	100506674	618	103313											
RASGRF2	5924	broad.mit.edu	37	chr5	80408635	80408635	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctgtggtgctggggaaacTctccgacatatacaagaggc	13	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80408635	C	C	80408635	3	2	106	1	0	0	0	0	1	0	0	0	13181	1551	54	5	2099	5	RASGRF2	5	80408635	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	49	80408635	100506625	619	103314											
ACOT12	134526	broad.mit.edu	37	chr5	80655619	80655619	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggatacctagtgtcaccagGactgaatggtaataataagg	11	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80655619	T	T	80655619	1	4	106	0	1	0	0	0	0	0	0	0	150	1189	41	3		3	ACOT12	5	80655619	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	246984	80655619	100259641	620	103315											
VCAN	1462	broad.mit.edu	37	chr5	82837202	82837202	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatggatcagagtgtaacaGaggtgcctgatgtgatggaa	14	4	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82837202	C	C	82837202	3	2	106	1	0	0	0	0	1	0	0	0	17265	943	33	4	8406	4	VCAN	5	82837202	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2181583	82837202	98078058	621	103316											
EDIL3	10085	broad.mit.edu	37	chr5	83239283	83239283	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agctctgaccgcaatgtgatCctcccgtaccaggaccaagg	10	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83239283	G	G	83239283	3	3	106	1	0	0	0	0	1	0	0	0	4955	854	30	4	48	4	EDIL3	5	83239283	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	402081	83239283	97675977	622	103317											
TMEM161B	153396	broad.mit.edu	37	chr5	87494880	87494880	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaaatttaaataagcttgCaggtgactacgcatcatggc	9	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87494880	A	A	87494880	2	1	106	1	0	0	0	0	0	0	0	1	16200	697	25	3		3	TMEM161B	5	87494880	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	4255597	87494880	93420380	623	103318											
MEF2C	4208	broad.mit.edu	37	chr5	88057031	88057031	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcctgctgatcattagatCaatatcttcgttaattttcc	5	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88057031	A	A	88057031	3	1	106	1	0	0	0	0	1	0	0	0	9550	826	29	3	1222	3	MEF2C	5	88057031	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	562151	88057031	92858229	624	103319											
GPR98	84059	broad.mit.edu	37	chr5	89986703	89986703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgaaattctgggacactcGgcaatgttactgttcagtgg	11	8	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89986703	T	T	89986703	3	4	106	1	0	0	0	0	1	0	0	0	6787	1116	39	1	6918	1	GPR98	5	89986703	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1929672	89986703	90928557	625	103320											
NR2F1	7025	broad.mit.edu	37	chr5	92929645	92929645	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggacaccgggaagtgcagCgggccaggcaggctgggtgg	22	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92929645	A	A	92929645	1	1	106	0	1	0	0	0	0	0	0	0	10722	783	27	3		3	NR2F1	5	92929645	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	2942942	92929645	87985615	626	103321											
ERAP1	51752	broad.mit.edu	37	chr5	96121724	96121724	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catttgctcccctgcctgaaGaaagcttttctcatccaaga	6	13	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96121724	A	A	96121724	1	1	106	0	1	0	0	0	0	0	0	0	5245	957	33	4		4	ERAP1	5	96121724	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3192079	96121724	84793536	627	103322											
RIOK2	55781	broad.mit.edu	37	chr5	96508994	96508994	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcaaaacaggtgtaagCtaatgaacaggtcattactc	9	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96508994	T	T	96508994	1	4	106	0	1	0	0	0	0	0	0	0	13489	812	28	4		4	RIOK2	5	96508994	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	387270	96508994	84406266	628	103323											
MAN2A1	4124	broad.mit.edu	37	chr5	109117174	109117174	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagagagacaagggccaatcGatgttccctgttttaagtgg	12	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109117174	C	C	109117174	2	2	106	1	0	0	0	0	0	0	0	1	9306	1045	37	4		4	MAN2A1	5	109117174	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	12608180	109117174	71798086	629	103324											
WDR36	134430	broad.mit.edu	37	chr5	110432718	110432718	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatgttatatgtatacttGaggtttctctttaacatctt	5	5	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110432718	T	T	110432718	1	4	106	0	1	0	0	0	0	0	0	0	17417	1305	45	3		3	WDR36	5	110432718	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1315544	110432718	70482542	630	103325											
WDR36	134430	broad.mit.edu	37	chr5	110446486	110446486	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgacatctaccttacaGctcacaagggatctgttaga	7	10	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110446486	T	T	110446486	5	4	106	1	0	0	0	0	0	0	1	0	17417	985	34	3	1663	3	WDR36	5	110446486	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	13768	110446486	70468774	631	103326											
WDR36	134430	broad.mit.edu	37	chr5	110454587	110454587	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actttctgatcaatgctggtGattaaaaaaaagaaaacatt	6	5	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110454587	T	T	110454587	1	4	106	0	1	0	0	0	0	0	0	0	17417	1305	45	3		3	WDR36	5	110454587	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	8101	110454587	70460673	632	103327											
CAMK4	814	broad.mit.edu	37	chr5	110730473	110730473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttaaacaaatcctggaggCagttgctgtaagtatgaagt	11	6	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110730473	A	A	110730473	3	1	106	1	0	0	0	0	1	0	0	0	2631	710	25	3	470	3	CAMK4	5	110730473	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	275886	110730473	70184787	633	103328											
PRR16	51334	broad.mit.edu	37	chr5	120022158	120022158	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgactgtgatacccgGtataacataaaaaacaggga	9	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120022158	T	T	120022158	2	4	106	1	0	0	0	0	0	0	0	1	12695	1248	44	3		3	PRR16	5	120022158	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	9291685	120022158	60893102	634	103329											
LOX	4015	broad.mit.edu	37	chr5	121402393	121402393	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctattttttcccacttcaGaacaccaggcactgatttat	5	11	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121402393	T	T	121402393	1	4	106	0	1	0	0	0	0	0	0	0	8985	957	33	3		3	LOX	5	121402393	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	1380235	121402393	59512867	635	103330											
CEP120	153241	broad.mit.edu	37	chr5	122736483	122736483	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcagtaaactcccccgcGggtggactgaggcctagggc	15	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122736483	A	A	122736483	1	1	106	0	1	0	0	0	0	0	0	0	3276	1131	39	4		4	CEP120	5	122736483	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1334090	122736483	58178777	636	103331											
MEGF10	84466	broad.mit.edu	37	chr5	126666979	126666979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgggattttttctttcttGtaggttgttcttcagaaaaa	8	4	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126666979	T	T	126666979	1	4	106	0	1	0	0	0	0	0	0	0	9553	1392	48	3		3	MEGF10	5	126666979	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3930496	126666979	54248281	637	103332											
FBN2	2201	broad.mit.edu	37	chr5	127671921	127671921	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtacttcacgaggaagTaaaatgttctcctgggggat	12	6	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127671921	C	C	127671921	1	2	106	0	1	0	0	0	0	0	0	0	5760	1653	57	5		5	FBN2	5	127671921	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1004942	127671921	53243339	638	103333											
ISOC1	51015	broad.mit.edu	37	chr5	128440942	128440942	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaataccctaaaggtcttgGgagcacggttcaagaaattg	10	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128440942	A	A	128440942	3	1	106	1	0	0	0	0	1	0	0	0	7932	1232	43	4	504	4	ISOC1	5	128440942	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	769021	128440942	52474318	639	103334											
SLC22A4	6583	broad.mit.edu	37	chr5	131671762	131671762	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaagtaagattttcattGtgaaaatgtcaaatagcata	7	3	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131671762	T	T	131671762	1	4	106	0	1	0	0	0	0	0	0	0	14570	1392	48	3		3	SLC22A4	5	131671762	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3230820	131671762	49243498	640	103335											
SLC22A5	6584	broad.mit.edu	37	chr5	131705591	131705591	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcctggtcggcggcgggTgccccgcgcgcacgcgcaaa	16	16	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131705591	G	G	131705591	1	3	106	0	1	0	0	0	0	0	0	0	14571	1711	59	5		5	SLC22A5	5	131705591	5'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	33829	131705591	49209669	641	103336											
AFF4	27125	broad.mit.edu	37	chr5	132270357	132270357	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctacctgcgctggtccgctGgctactatgtccactctgta	10	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132270357	A	A	132270357	4	1	106	1	0	0	0	0	0	1	0	0	359	1357	47	4	3167	4	AFF4	5	132270357	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	564766	132270357	48644903	642	103337											
SPOCK1	6695	broad.mit.edu	37	chr5	136476389	136476389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgggtccagggctgagGcaaaaacaagaaggagggca	17	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136476389	T	T	136476389	1	4	106	0	1	0	0	0	0	0	0	0	15197	1218	42	3		3	SPOCK1	5	136476389	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4206032	136476389	44438871	643	103338											
PCDHA3	56145	broad.mit.edu	37	chr5	140181997	140181997	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccttcaagaattactaCtcattggtgctggacagccc	7	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140181997	T	T	140181997	2	4	106	1	0	0	0	0	0	0	0	1	11619	576	20	4		4	PCDHA3	5	140181997	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	3705608	140181997	40733263	644	103339											
PCDHA8	56140	broad.mit.edu	37	chr5	140222743	140222743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttcgtatgagctgcagCcagctgcaagcagccctcgc	12	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140222743	A	A	140222743	3	1	106	1	0	0	0	0	1	0	0	0	11624	739	26	3	1839	3	PCDHA8	5	140222743	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	40746	140222743	40692517	645	103340											
PCDHA12	56137	broad.mit.edu	37	chr5	140255192	140255192	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaacacggcaccttcgtGggccgcatcgctcaggacct	11	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140255192	T	T	140255192	2	4	106	1	0	0	0	0	0	0	0	1	11616	1335	47	2		2	PCDHA12	5	140255192	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	32449	140255192	40660068	646	103341											
PCDHA13	56136	broad.mit.edu	37	chr5	140264058	140264058	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggcgcgtgcgcgccgggCaagcccactctagtgtgctc	16	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140264058	A	A	140264058	2	1	106	1	0	0	0	0	0	0	0	1	11617	697	25	3		3	PCDHA13	5	140264058	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	8866	140264058	40651202	647	103342											
PCDHB4	56131	broad.mit.edu	37	chr5	140504017	140504017	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagttttgtcaaacttccCactgcaatgcctttatttaa	5	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140504017	A	A	140504017	1	1	106	0	1	0	0	0	0	0	0	0	11638	609	21	2		2	PCDHB4	5	140504017	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	239959	140504017	40411243	648	103343											
PCDHB7	56129	broad.mit.edu	37	chr5	140553818	140553818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaacaacagccccgccCtgcccatcggcagtgtcagc	11	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140553818	A	A	140553818	3	1	106	1	0	0	0	0	1	0	0	0	11641	680	24	2	1404	2	PCDHB7	5	140553818	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	49801	140553818	40361442	649	103344											
PCDHB8	56128	broad.mit.edu	37	chr5	140559208	140559208	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggcgttcgagttccgGgtgggcgcttcagaccgcgg	17	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559208	A	A	140559208	2	1	106	1	0	0	0	0	0	0	0	1	11642	1219	43	4		4	PCDHB8	5	140559208	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	5390	140559208	40356052	650	103345											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712339	140712339	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgtacctggtggtggcGgcggccgcggtctcctgcgt	16	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140712339	T	T	140712339	2	4	106	1	0	0	0	0	0	0	0	1	11644	1103	39	1		1	PCDHGA1	5	140712339	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	153131	140712339	40202921	651	103346											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773147	140773147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtccttgagaacatgcCcccaggcacgcggctgctta	11	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140773147	A	A	140773147	3	1	106	1	0	0	0	0	1	0	0	0	11654	623	22	2	769	2	PCDHGA8	5	140773147	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	60808	140773147	40142113	652	103347											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774234	140774234	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgagccgggactcttctcGgtgggtctgcacacgggcga	16	12	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140774234	C	C	140774234	2	2	106	1	0	0	0	0	0	0	0	1	11654	1103	39	4		4	PCDHGA8	5	140774234	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1087	140774234	40141026	653	103348											
PCDHGA9	56107	broad.mit.edu	37	chr5	140783353	140783353	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaatcaacggaaaagtggcAtacaaattctggaaaattaa	9	5	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140783353	T	T	140783353	2	4	106	1	0	0	0	0	0	0	0	1	11655	204	8	5		5	PCDHGA9	5	140783353	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	9119	140783353	40131907	654	103349											
PCDHGA9	56107	broad.mit.edu	37	chr5	140784676	140784676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctcaggctgaggcactgGcactcctcgcatctgctgcg	12	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140784676	T	T	140784676	3	4	106	1	0	0	0	0	1	0	0	0	11655	1212	42	3	2159	3	PCDHGA9	5	140784676	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1323	140784676	40130584	655	103350											
HDAC3	8841	broad.mit.edu	37	chr5	141005722	141005722	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgagggacaccctagctcAcactggacaacaggggagga	13	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141005722	T	T	141005722	1	4	106	0	1	0	0	0	0	0	0	0	7075	174	6	5		5	HDAC3	5	141005722	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	221046	141005722	39909538	656	103351											
PPP2R2B	5521	broad.mit.edu	37	chr5	146086738	146086738	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctccagctgccgcctaagGctgttgatgtagctctcgaa	11	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146086738	C	C	146086738	1	2	106	0	1	0	0	0	0	0	0	0	12486	1218	42	4		4	PPP2R2B	5	146086738	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5081016	146086738	34828522	657	103352											
JAKMIP2	9832	broad.mit.edu	37	chr5	147019032	147019032	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaagctggttctaatgtttCtagagtcaaggtttgttgac	10	6	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147019032	A	A	147019032	1	1	106	0	1	0	0	0	0	0	0	0	8011	928	32	3		3	JAKMIP2	5	147019032	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	932294	147019032	33896228	658	103353											
CSNK1A1	1452	broad.mit.edu	37	chr5	148925236	148925236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgccttggcattgttggcCtgcatcttctttaggccctt	9	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148925236	A	A	148925236	1	1	106	0	1	0	0	0	0	0	0	0	3984	696	24	2		2	CSNK1A1	5	148925236	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1906204	148925236	31990024	659	103354											
CAMK2A	815	broad.mit.edu	37	chr5	149644579	149644579	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgctccagcttctgatggtCtgaaacacagaggctcatgt	10	11	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149644579	A	A	149644579	5	1	106	1	0	0	0	0	0	0	1	0	2625	927	32	3	1380	3	CAMK2A	5	149644579	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	719343	149644579	31270681	660	103355											
ADAM19	8728	broad.mit.edu	37	chr5	156934216	156934216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttccaatgtgcctgggaGtaagtggccatcacggggtt	14	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156934216	T	T	156934216	1	4	106	0	1	0	0	0	0	0	0	0	240	1044	36	3		3	ADAM19	5	156934216	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	7289637	156934216	23981044	661	103356											
EBF1	1879	broad.mit.edu	37	chr5	158139080	158139080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcctcagaccgagaagCcctgcccactgggccacatg	14	15	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158139080	A	A	158139080	1	1	106	0	1	0	0	0	0	0	0	0	4920	754	26	3		3	EBF1	5	158139080	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1204864	158139080	22776180	662	103357											
RNF145	153830	broad.mit.edu	37	chr5	158630641	158630641	+	5'UTR	DEL	C	-	-													gccatgttgtttttttttttCtttttttttttcttggagaa					rs74841177		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158630641	-	-	158630641	6	5	106	0	1	1	0	1	0	0	0	0	13558	912	32	0		0	RNF145	5	158630641	5'UTR	DEL	C	TCGA-44-2656-01A-02D-0969-08	491561	158630641	22284619	663	103358											
ODZ2	57451	broad.mit.edu	37	chr5	167525048	167525048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagattcagtgcaggactgtCcacgtaactgccatgggaat	11	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167525048	A	A	167525048	3	1	106	1	0	0	0	0	1	0	0	0	10930	855	30	3	1763	3	ODZ2	5	167525048	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	8894407	167525048	13390212	664	103359											
SLIT3	6586	broad.mit.edu	37	chr5	168151504	168151504	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtacctgaaagaggtgtgGagagacaacacctgagaaag	14	6	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168151504	A	A	168151504	1	1	106	0	1	0	0	0	0	0	0	0	14855	1189	41	4		4	SLIT3	5	168151504	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	626456	168151504	12763756	665	103360											
SLIT3	6586	broad.mit.edu	37	chr5	168271528	168271529	+	Intron	DEL	AC	-	-													cctctctcctccccacacagAcacacacacatacacacaca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	168271529	-	-	168271528	6	5	106	0	1	1	0	1	0	0	0	0	14855	290	10	0		0	SLIT3	5	168271528	Intron	DEL	AC	TCGA-44-2656-01A-02D-0969-08	120024	168271528	12643732	666	103361											
NKX2-5	1482	broad.mit.edu	37	chr5	172662181	172662181	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatggtgccgccgcccgcCcgcgcacccgtcggccagct	13	20	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172662181	A	A	172662181	1	1	106	0	1	0	0	0	0	0	0	0	10548	638	22	2		2	NKX2-5	5	172662181	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	4390653	172662181	8253079	667	103362											
ZNF346	23567	broad.mit.edu	37	chr5	176468253	176468253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccatcatacttttagaaCtgcgtttcttttcagacctg	6	10	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176468253	A	A	176468253	1	1	106	0	1	0	0	0	0	0	0	0	17986	580	20	3		3	ZNF346	5	176468253	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3806072	176468253	4447007	668	103363											
ZNF346	23567	broad.mit.edu	37	chr5	176471260	176471260	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtagctggagaagaatctAgaaagtaggttggggttaat	14	2	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176471260	G	G	176471260	1	3	106	0	1	0	0	0	0	0	0	0	17986	435	15	5		5	ZNF346	5	176471260	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3007	176471260	4444000	669	103364											
F12	2161	broad.mit.edu	37	chr5	176832265	176832265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatccagcaacctattctgTaggcccagggttgcccctgt	10	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176832265	A	A	176832265	1	1	106	0	1	0	0	0	0	0	0	0	5382	1653	57	5		5	F12	5	176832265	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	361005	176832265	4082995	670	103365											
ZNF354C	30832	broad.mit.edu	37	chr5	178506336	178506336	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggagagaaaccgtatcgAtgtagggaatgtggtaaagc	14	5	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178506336	T	T	178506336	2	4	106	1	0	0	0	0	0	0	0	1	17992	320	12	5		5	ZNF354C	5	178506336	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	1674071	178506336	2408924	671	103366											
SQSTM1	8878	broad.mit.edu	37	chr5	179250885	179250885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgccggcgggaccaccGcccaccgtgtgctcaggagg	16	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179250885	T	T	179250885	3	4	106	1	0	0	0	0	1	0	0	0	15248	1087	38	3	339	3	SQSTM1	5	179250885	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	744549	179250885	1664375	672	103367											
SLC22A23	63027	broad.mit.edu	37	chr6	3324006	3324006	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtgtgtcctgcccggggCcgggccttcaggaagcatgt	15	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3324006	G	G	3324006	1	3	106	0	1	0	0	0	0	0	0	0	14566	754	26	4		4	SLC22A23	6	3324006	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08		3324006	167791061	673	103368											
F13A1	2162	broad.mit.edu	37	chr6	6318869	6318869	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggaactgctcttctgcctCcaaaggcggtcctggaagtt	12	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6318869	T	T	6318869	3	4	106	1	0	0	0	0	1	0	0	0	5383	855	30	4	2225	4	F13A1	6	6318869	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2994863	6318869	164796198	674	103369											
JARID2	3720	broad.mit.edu	37	chr6	15513094	15513094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccaagaagaaccttgaCagctgcctagtaatgaaaat	7	10	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15513094	T	T	15513094	1	4	106	0	1	0	0	0	0	0	0	0	8015	493	17	4		4	JARID2	6	15513094	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	9194225	15513094	155601973	675	103370											
ATXN1	6310	broad.mit.edu	37	chr6	16328052	16328052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatggagtggtggcccCtgcggccgaggccactgcac	17	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16328052	A	A	16328052	3	1	106	1	0	0	0	0	1	0	0	0	1213	681	24	2	1965	2	ATXN1	6	16328052	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	814958	16328052	154787015	676	103371											
NRSN1	140767	broad.mit.edu	37	chr6	24134721	24134721	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatccaaagatcacctaacAggtggagctcagtattctgg	10	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24134721	T	T	24134721	3	4	106	1	0	0	0	0	1	0	0	0	10757	179	7	5	168	5	NRSN1	6	24134721	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	7806669	24134721	146980346	677	103372											
NRSN1	140767	broad.mit.edu	37	chr6	24145768	24145768	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgcttctgtcattatctAcctgtaggttggactcatct	7	10	6	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24145768	C	C	24145768	1	2	106	0	1	0	0	0	0	0	0	0	10757	406	14	5		5	NRSN1	6	24145768	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	11047	24145768	146969299	678	103373											
FAM65B	9750	broad.mit.edu	37	chr6	24843104	24843104	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acttacttttagaatatcatCcaaattcatgacttcttggt	4	8	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24843104	G	G	24843104	3	3	106	1	0	0	0	0	1	0	0	0	5651	855	30	4	1350	4	FAM65B	6	24843104	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	697336	24843104	146271963	679	103374											
SLC17A4	10050	broad.mit.edu	37	chr6	25769244	25769244	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtccgacatgggctggccctCatcttgcagctctgtaattt	10	12	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25769244	A	A	25769244	2	1	106	1	0	0	0	0	0	0	0	1	14532	813	29	3		3	SLC17A4	6	25769244	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	926140	25769244	145345823	680	103375											
SLC17A3	10786	broad.mit.edu	37	chr6	25849499	25849499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttaatgacaaattacCcaaaatttaactttattttt	1	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25849499	A	A	25849499	1	1	106	0	1	0	0	0	0	0	0	0	14531	638	22	2		2	SLC17A3	6	25849499	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	80255	25849499	145265568	681	103376											
HIST1H2AC	8334	broad.mit.edu	37	chr6	26124161	26124161	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagaaatgtgtcgaaagtAaagagcggatttctgctact	10	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26124161	G	G	26124161	1	3	106	0	1	0	0	0	0	0	0	0	7197	377	13	5		5	HIST1H2AC	6	26124161	5'Flank	SNP	A	TCGA-44-2656-01A-02D-0969-08	274662	26124161	144990906	682	103377											
ZNF311	282890	broad.mit.edu	37	chr6	28971704	28971704	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctccttgtgatgtatcaCagaccctcctcttcttacct	4	15	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28971704	G	G	28971704	1	3	106	0	1	0	0	0	0	0	0	0	17960	493	17	4		4	ZNF311	6	28971704	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2847543	28971704	142143363	683	103378											
OR2J2	26707	broad.mit.edu	37	chr6	29141790	29141790	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatatgatcgttatgtagcTgtgtgtagacctttgcatta	9	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29141790	C	C	29141790	2	2	106	1	0	0	0	0	0	0	0	1	11097	1567	55	5		5	OR2J2	6	29141790	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	170086	29141790	141973277	684	103379											
GNL1	2794	broad.mit.edu	37	chr6	30520221	30520221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctccttggaggccaccaCgcacaagctgccacttcctt	7	17	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30520221	T	T	30520221	1	4	106	0	1	0	0	0	0	0	0	0	6599	551	19	4		4	GNL1	6	30520221	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1378431	30520221	140594846	685	103380											
MUC21	394263	broad.mit.edu	37	chr6	30955175	30955175	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccagcacagccaccaactCtgagtccagcacagtgtcca	9	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30955175	A	A	30955175	3	1	106	1	0	0	0	0	1	0	0	0	10071	913	32	3	1229	3	MUC21	6	30955175	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	434954	30955175	140159892	686	103381											
TNXB	7148	broad.mit.edu	37	chr6	32017467	32017467	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggggacctgaggtcatttCagagaagtccattcttgggg	15	7	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32017467	A	A	32017467	1	1	106	0	1	0	0	0	0	0	0	0	16469	841	29	3		3	TNXB	6	32017467	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1062292	32017467	139097600	687	103382											
NOTCH4	4855	broad.mit.edu	37	chr6	32168740	32168740	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagcgggatgccgggtggtCagggccacagcgggacaaat	17	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32168740	A	A	32168740	3	1	106	1	0	0	0	0	1	0	0	0	10646	826	29	3	1860	3	NOTCH4	6	32168740	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	151273	32168740	138946327	688	103383											
CLPS	1208	broad.mit.edu	37	chr6	35763071	35763071	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtctgcagagacacagccAatggagtcaaggctatgggg	15	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35763071	T	T	35763071	1	4	106	0	1	0	0	0	0	0	0	0	3585	145	5	5		5	CLPS	6	35763071	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3594331	35763071	135351996	689	103384											
CLPS	1208	broad.mit.edu	37	chr6	35764965	35764965	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggactcaggaggcgcctccCctgaagaccctcttaccagg	12	15	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35764965	T	T	35764965	1	4	106	0	1	0	0	0	0	0	0	0	3585	638	22	4		4	CLPS	6	35764965	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1894	35764965	135350102	690	103385											
CPNE5	57699	broad.mit.edu	37	chr6	36715860	36715860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttggttgtatctttggtcCtccagacctaggtacatcct	8	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36715860	T	T	36715860	1	4	106	0	1	0	0	0	0	0	0	0	3847	696	24	4		4	CPNE5	6	36715860	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	950895	36715860	134399207	691	103386											
GLP1R	2740	broad.mit.edu	37	chr6	39046706	39046706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgagtcctgctggatgCatgtgtgcatctctctccct	10	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39046706	A	A	39046706	1	1	106	0	1	0	0	0	0	0	0	0	6516	725	25	3		3	GLP1R	6	39046706	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2330846	39046706	132068361	692	103387											
NFYA	4800	broad.mit.edu	37	chr6	41060587	41060587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatggatgaagaggaacCaagaaactgtttctatgtcc	9	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41060587	T	T	41060587	1	4	106	0	1	0	0	0	0	0	0	0	10484	609	21	4		4	NFYA	6	41060587	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2013881	41060587	130054480	693	103388											
NCR2	9436	broad.mit.edu	37	chr6	41309911	41309911	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtgtggtgtgggttgaactCggggaaaatggaacagggaa	18	3	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41309911	G	G	41309911	1	3	106	0	1	0	0	0	0	0	0	0	10333	899	31	4		4	NCR2	6	41309911	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	249324	41309911	129805156	694	103389											
NCR2	9436	broad.mit.edu	37	chr6	41318322	41318322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtatggcaaccaaccctgCgagtagtgggatggggaagg	18	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41318322	A	A	41318322	1	1	106	0	1	0	0	0	0	0	0	0	10333	783	27	3		3	NCR2	6	41318322	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	8411	41318322	129796745	695	103390											
ABCC10	89845	broad.mit.edu	37	chr6	43404065	43404065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagagaagcagtgaccgaGccaatcatagctgatggctc	12	10	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43404065	T	T	43404065	1	4	106	0	1	0	0	0	0	0	0	0	50	986	34	3		3	ABCC10	6	43404065	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2085743	43404065	127711002	696	103391											
TJAP1	93643	broad.mit.edu	37	chr6	43472822	43472822	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtactgccaggggctccccGgaggaagagctgcccctgcc	15	15	0	1	rs151059106	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43472822	A	A	43472822	2	1	106	1	0	0	0	0	0	0	0	1	16051	1103	39	4		4	TJAP1	6	43472822	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	68757	43472822	127642245	697	103392											
RSPH9	221421	broad.mit.edu	37	chr6	43623573	43623573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacctgggagggtgtgccCagtgacctggcaccagtggt	15	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43623573	A	A	43623573	1	1	106	0	1	0	0	0	0	0	0	0	13819	609	21	2		2	RSPH9	6	43623573	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	150751	43623573	127491494	698	103393											
TMEM63B	55362	broad.mit.edu	37	chr6	44122031	44122031	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggcagcgccaacagggccAagcgggcgtggggtcatgat	18	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44122031	T	T	44122031	1	4	106	0	1	0	0	0	0	0	0	0	16314	145	5	5		5	TMEM63B	6	44122031	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	498458	44122031	126993036	699	103394											
SLC35B2	347734	broad.mit.edu	37	chr6	44223448	44223448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtagacaaaaattgacCtctctctcttcaggattatg	7	8	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44223448	A	A	44223448	1	1	106	0	1	0	0	0	0	0	0	0	14690	696	24	2		2	SLC35B2	6	44223448	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	101417	44223448	126891619	700	103395											
TCTE1	202500	broad.mit.edu	37	chr6	44255645	44255645	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactggcaggtccttgaaaCaggtagggatctggagcaaa	14	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44255645	A	A	44255645	1	1	106	0	1	0	0	0	0	0	0	0	15839	493	17	3		3	TCTE1	6	44255645	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	32197	44255645	126859422	701	103396											
SLC25A27	9481	broad.mit.edu	37	chr6	46638783	46638783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccaatatttaatttttatAagattccttagacaattttt	4	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46638783	G	G	46638783	1	3	106	0	1	0	0	0	0	0	0	0	14604	377	13	5		5	SLC25A27	6	46638783	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2383138	46638783	124476284	702	103397											
TDRD6	221400	broad.mit.edu	37	chr6	46657599	46657599	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcaattcggaaaatgtGgactggtatgacgtaaggat	14	5	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46657599	T	T	46657599	2	4	106	1	0	0	0	0	0	0	0	1	15856	1335	47	2		2	TDRD6	6	46657599	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	18816	46657599	124457468	703	103398											
MEP1A	4224	broad.mit.edu	37	chr6	46806811	46806811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggtgatcggaggcacgGctggcgtgatcttcttgacc	15	10	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46806811	T	T	46806811	3	4	106	1	0	0	0	0	1	0	0	0	9568	1203	42	3	2233	3	MEP1A	6	46806811	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	149212	46806811	124308256	704	103399											
OPN5	221391	broad.mit.edu	37	chr6	47754190	47754190	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgaagttgagaagtgtttCatatctgagtgaactcgaaa	10	4	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47754190	G	G	47754190	1	3	106	0	1	0	0	0	0	0	0	0	10977	841	29	4		4	OPN5	6	47754190	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	947379	47754190	123360877	705	103400											
C6orf138	442213	broad.mit.edu	37	chr6	47846506	47846506	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccagctcaattgaggtgaCgctaagaattagccagaagt	11	9	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47846506	G	G	47846506	3	3	106	1	0	0	0	0	1	0	0	0	2355	536	19	4	470	4	C6orf138	6	47846506	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	92316	47846506	123268561	706	103401											
CRISP1	167	broad.mit.edu	37	chr6	49808566	49808566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttgaaaaactagattaGgttactttagggggatatat	10	2	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49808566	T	T	49808566	1	4	106	0	1	0	0	0	0	0	0	0	3911	1015	35	2		2	CRISP1	6	49808566	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1962060	49808566	121306501	707	103402											
DEFB110	245913	broad.mit.edu	37	chr6	49977033	49977033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtctattattgatttgtGggttttcttgctaaagaaag	9	3	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49977033	T	T	49977033	1	4	106	0	1	0	0	0	0	0	0	0	4439	1363	47	2		2	DEFB110	6	49977033	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	168467	49977033	121138034	708	103403											
DEFB112	245915	broad.mit.edu	37	chr6	50011302	50011302	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttcttcaatgacgtgagtCtttagggtaccattcttgag	9	7	4	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50011302	T	T	50011302	3	4	106	1	0	0	0	0	1	0	0	0	4440	913	32	4	16	4	DEFB112	6	50011302	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	34269	50011302	121103765	709	103404											
TFAP2D	83741	broad.mit.edu	37	chr6	50697057	50697057	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtttagcaaaataatgctGgaaggttggcgtgtctttga	12	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50697057	C	C	50697057	1	2	106	0	1	0	0	0	0	0	0	0	15913	1363	47	4		4	TFAP2D	6	50697057	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	685755	50697057	120418010	710	103405											
TFAP2B	7021	broad.mit.edu	37	chr6	50791250	50791250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccagccgccctacttccCacccccctaccagccgctcc	4	25	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50791250	A	A	50791250	3	1	106	1	0	0	0	0	1	0	0	0	15911	594	21	2	218	2	TFAP2B	6	50791250	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	94193	50791250	120323817	711	103406											
PKHD1	5314	broad.mit.edu	37	chr6	51934348	51934348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgaaaaagacaaagttctgTtttgaatgaaaatatcaact	6	5	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51934348	A	A	51934348	1	1	106	0	1	0	0	0	0	0	0	0	12066	1740	60	5		5	PKHD1	6	51934348	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1143098	51934348	119180719	712	103407											
GSTA1	2938	broad.mit.edu	37	chr6	52663830	52663830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaattttaagaattaataGgtcaaatctgttcatctttt	5	4	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52663830	T	T	52663830	1	4	106	0	1	0	0	0	0	0	0	0	6896	1015	35	2		2	GSTA1	6	52663830	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	729482	52663830	118451237	713	103408											
LRRC1	55227	broad.mit.edu	37	chr6	53747620	53747620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataaatcattatatttatGcttggtatacactatacatg	5	5	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53747620	T	T	53747620	1	4	106	0	1	0	0	0	0	0	0	0	9053	1334	46	3		3	LRRC1	6	53747620	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1083790	53747620	117367447	714	103409											
COL19A1	1310	broad.mit.edu	37	chr6	70866477	70866477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtccaaattacatgcccCaagtgttcttagaagagatt	7	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70866477	A	A	70866477	1	1	106	0	1	0	0	0	0	0	0	0	3708	609	21	2		2	COL19A1	6	70866477	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	17118857	70866477	100248590	715	103410											
RIMS1	22999	broad.mit.edu	37	chr6	72806785	72806785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaacaaagtttgctgatGggtgcggtcatctctgctcc	10	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72806785	T	T	72806785	3	4	106	1	0	0	0	0	1	0	0	0	13478	1348	47	2	389	2	RIMS1	6	72806785	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1940308	72806785	98308282	716	103411											
KCNQ5	56479	broad.mit.edu	37	chr6	73696655	73696655	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagggtgaggaacaggcagcCttggggcagataacggaagc	17	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73696655	T	T	73696655	1	4	106	0	1	0	0	0	0	0	0	0	8156	696	24	4		4	KCNQ5	6	73696655	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	889870	73696655	97418412	717	103412											
CD109	135228	broad.mit.edu	37	chr6	74440084	74440084	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctacctctgaacagtgcAgatgagatttatgagctacg	10	9	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74440084	T	T	74440084	2	4	106	1	0	0	0	0	0	0	0	1	2993	175	7	5		5	CD109	6	74440084	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	743429	74440084	96674983	718	103413											
TBX18	9096	broad.mit.edu	37	chr6	85446332	85446332	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccacagagagtttctttcCacatagcttttaaaaaagaa	5	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85446332	A	A	85446332	1	1	106	0	1	0	0	0	0	0	0	0	15775	609	21	2		2	TBX18	6	85446332	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	11006248	85446332	85668735	719	103414											
ZNF292	23036	broad.mit.edu	37	chr6	87966098	87966098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaagctaatggaccattGtcaaatggtttggaaaaccc	10	8	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87966098	T	T	87966098	3	4	106	1	0	0	0	0	1	0	0	0	17952	1368	48	3	2781	3	ZNF292	6	87966098	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2519766	87966098	83148969	720	103415											
GABRR1	2569	broad.mit.edu	37	chr6	89895078	89895078	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggtgtggaattcctgaatGaggaactgggagagtgagat	17	3	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89895078	A	A	89895078	2	1	106	1	0	0	0	0	0	0	0	1	6236	1277	45	4		4	GABRR1	6	89895078	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1928980	89895078	81219989	721	103416											
EPHA7	2045	broad.mit.edu	37	chr6	93964397	93964397	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgtcccaataaggtctttCtccataagacataacttccc	4	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93964397	T	T	93964397	3	4	106	1	0	0	0	0	1	0	0	0	5214	922	32	4	512	4	EPHA7	6	93964397	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4069319	93964397	77150670	722	103417											
FHL5	9457	broad.mit.edu	37	chr6	97063550	97063550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcgaatgctttaactgcGggaaatgctctgtctccttg	10	9	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97063550	T	T	97063550	3	4	106	1	0	0	0	0	1	0	0	0	5938	1116	39	1	775	1	FHL5	6	97063550	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3099153	97063550	74051517	723	103418											
GPR63	81491	broad.mit.edu	37	chr6	97246908	97246908	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtagcctggattggttgTgtacccaaacacacactggg	12	10	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97246908	G	G	97246908	3	3	106	1	0	0	0	0	1	0	0	0	6769	1696	59	5	563	5	GPR63	6	97246908	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	183358	97246908	73868159	724	103419											
GPR63	81491	broad.mit.edu	37	chr6	97247592	97247592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatggaacgcagtcaacaCtgccgagaagaccatggttt	12	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97247592	A	A	97247592	3	1	106	1	0	0	0	0	1	0	0	0	6769	565	20	3	1247	3	GPR63	6	97247592	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	684	97247592	73867475	725	103420											
GRIK2	2898	broad.mit.edu	37	chr6	101878314	101878314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatccacatctgctggaaGgtggaaagggaggccagcat	15	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101878314	T	T	101878314	1	4	106	0	1	0	0	0	0	0	0	0	6840	1015	35	2		2	GRIK2	6	101878314	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4630722	101878314	69236753	726	103421											
FYN	2534	broad.mit.edu	37	chr6	112020599	112020599	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatctggatggcctgtgccCgtctagttatccaggttaag	11	9	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112020599	G	G	112020599	1	3	106	0	1	0	0	0	0	0	0	0	6186	667	23	4		4	FYN	6	112020599	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	10142285	112020599	59094468	727	103422											
LAMA4	3910	broad.mit.edu	37	chr6	112494032	112494032	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaatggagataaaggctCagtgtggctttctcctgttc	11	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112494032	A	A	112494032	1	1	106	0	1	0	0	0	0	0	0	0	8680	841	29	3		3	LAMA4	6	112494032	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	473433	112494032	58621035	728	103423											
HDAC2	3066	broad.mit.edu	37	chr6	114270215	114270215	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacactgtaataccacagCactaggttgatacatctcca	5	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114270215	T	T	114270215	3	4	106	1	0	0	0	0	1	0	0	0	7074	710	25	4	725	4	HDAC2	6	114270215	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1776183	114270215	56844852	729	103424											
SLC35F1	222553	broad.mit.edu	37	chr6	118598724	118598724	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataggtaaggagttggctCacatacgatgctctttttat	9	6	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118598724	T	T	118598724	1	4	106	0	1	0	0	0	0	0	0	0	14702	841	29	4		4	SLC35F1	6	118598724	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4328509	118598724	52516343	730	103425											
LAMA2	3908	broad.mit.edu	37	chr6	129511367	129511367	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggaaaatgttgaaggaggAgactgtagtcgttgcaaatc	13	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129511367	T	T	129511367	2	4	106	1	0	0	0	0	0	0	0	1	8678	291	11	5		5	LAMA2	6	129511367	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	10912643	129511367	41603700	731	103426											
L3MBTL3	84456	broad.mit.edu	37	chr6	130378624	130378624	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaagcggtggcagtgccGgcgaagctgttcaaggaggt	18	7	1	1	rs142020636	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130378624	T	T	130378624	2	4	106	1	0	0	0	0	0	0	0	1	8665	1103	39	1		1	L3MBTL3	6	130378624	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	867257	130378624	40736443	732	103427											
ENPP1	5167	broad.mit.edu	37	chr6	132147334	132147334	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaattcatcaagctacttttCcccaaaggtaaacattgcag	5	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132147334	A	A	132147334	1	1	106	0	1	0	0	0	0	0	0	0	5171	870	30	3		3	ENPP1	6	132147334	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1768710	132147334	38967733	733	103428											
ENPP1	5167	broad.mit.edu	37	chr6	132194288	132194288	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatattgttatgtgaaaactGtataagtatgattctcttca	6	4	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132194288	C	C	132194288	1	2	106	0	1	0	0	0	0	0	0	0	5171	1392	48	4		4	ENPP1	6	132194288	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	46954	132194288	38920779	734	103429											
MYB	4602	broad.mit.edu	37	chr6	135539023	135539023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtagcagtacctgggaaCctgcatcctgtggaaagatg	12	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135539023	A	A	135539023	3	1	106	1	0	0	0	0	1	0	0	0	10101	507	18	3	2253	3	MYB	6	135539023	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3344735	135539023	35576044	735	103430											
HEBP2	23593	broad.mit.edu	37	chr6	138727307	138727307	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggtaagtggtagataatttAtagccttgctgactgctagt	11	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138727307	G	G	138727307	1	3	106	0	1	0	0	0	0	0	0	0	7104	464	16	5		5	HEBP2	6	138727307	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3188284	138727307	32387760	736	103431											
SHPRH	257218	broad.mit.edu	37	chr6	146262871	146262871	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttctggttccgtaggcgaCgcccatcctcactattgcta	9	14	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146262871	G	G	146262871	3	3	106	1	0	0	0	0	1	0	0	0	14404	536	19	4	2801	4	SHPRH	6	146262871	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	7535564	146262871	24852196	737	103432											
NUP43	348995	broad.mit.edu	37	chr6	150067678	150067678	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaagcaagcacagtacgCgcctctcagcaccgcctctt	7	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150067678	A	A	150067678	1	1	106	0	1	0	0	0	0	0	0	0	10860	783	27	3		3	NUP43	6	150067678	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	3804807	150067678	21047389	738	103433											
MTHFD1L	25902	broad.mit.edu	37	chr6	151277328	151277328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggccagtggttctctcaCtgttttgggtgctcagcagg	14	9	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151277328	A	A	151277328	1	1	106	0	1	0	0	0	0	0	0	0	10022	580	20	3		3	MTHFD1L	6	151277328	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1209650	151277328	19837739	739	103434											
ESR1	2099	broad.mit.edu	37	chr6	152265375	152265375	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagagatgatggggagggCaggggtgaagtggggtctgc	22	4	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152265375	A	A	152265375	2	1	106	1	0	0	0	0	0	0	0	1	5298	697	25	3		3	ESR1	6	152265375	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	988047	152265375	18849692	740	103435											
SYNE1	23345	broad.mit.edu	37	chr6	152763330	152763330	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctccctgctgcgcctgcgcGatctgctgctgcacatctct	9	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152763330	T	T	152763330	2	4	106	1	0	0	0	0	0	0	0	1	15564	1048	37	3		3	SYNE1	6	152763330	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	497955	152763330	18351737	741	103436											
CNKSR3	154043	broad.mit.edu	37	chr6	154732033	154732033	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggggaggagaagtcaaggCcaacggcagaacaaaacaaa	14	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154732033	T	T	154732033	1	4	106	0	1	0	0	0	0	0	0	0	3640	754	26	4		4	CNKSR3	6	154732033	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1968703	154732033	16383034	742	103437											
LPA	4018	broad.mit.edu	37	chr6	160977165	160977165	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatgtgcctcgataactcTggccattaccatggtagcac	9	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160977165	A	A	160977165	3	1	106	1	0	0	0	0	1	0	0	0	8990	1580	55	5	1297	5	LPA	6	160977165	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	6245132	160977165	10137902	743	103438											
LPA	4018	broad.mit.edu	37	chr6	160998097	160998097	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccctaggaagtgagctTaaagcatgggtcttctaacc	10	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160998097	C	C	160998097	1	2	106	0	1	0	0	0	0	0	0	0	8990	1769	61	5		5	LPA	6	160998097	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	20932	160998097	10116970	744	103439											
C6orf118	168090	broad.mit.edu	37	chr6	165714862	165714862	+	Intron	SNP	C	A	A													gctgcaccaagagcactgcaCcgagaacactgcaccgagag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165714862	A	A	165714862	1	1	106	0	1	0	0	0	0	0	0	0	2346	522	18	3		3	C6orf118	6	165714862	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4716765	165714862	5400205	745	103440	452	2									
C6orf118	168090	broad.mit.edu	37	chr6	165714864	165714864	+	Intron	SNP	G	C	C													tgcaccaagagcactgcaccGagaacactgcaccgagagca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165714864	C	C	165714864	1	2	106	0	1	0	0	0	0	0	0	0	2346	1073	37	4		4	C6orf118	6	165714864	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2	165714864	5400203	746	103441	452	2									
UNC93A	54346	broad.mit.edu	37	chr6	167711255	167711255	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttaaatcgagtctagggaCatgtgcctagactcgatcta	9	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167711255	T	T	167711255	1	4	106	0	1	0	0	0	0	0	0	0	17122	493	17	4		4	UNC93A	6	167711255	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1996391	167711255	3403812	747	103442											
UNC93A	54346	broad.mit.edu	37	chr6	167717626	167717626	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcgaatacacaagggtatGaacgaaagtgagggccggtg	15	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167717626	C	C	167717626	1	2	106	0	1	0	0	0	0	0	0	0	17122	1305	45	4		4	UNC93A	6	167717626	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	6371	167717626	3397441	748	103443											
FRMD1	79981	broad.mit.edu	37	chr6	168463475	168463475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagccagcgcccatgacCgctgcagggatgctacacag	13	15	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168463475	A	A	168463475	1	1	106	0	1	0	0	0	0	0	0	0	6109	667	23	1		1	FRMD1	6	168463475	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	745849	168463475	2651592	749	103444											
WDR27	253769	broad.mit.edu	37	chr6	170088913	170088913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtaactcgttcaatacCtgatgagaaggatccttagt	8	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170088913	A	A	170088913	3	1	106	1	0	0	0	0	1	0	0	0	17411	695	24	2	2480	2	WDR27	6	170088913	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1625438	170088913	1026154	750	103445											
PDGFA	5154	broad.mit.edu	37	chr7	540753	540753	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacgaaggcagccactcacCcgtgtcctcttcccgataat	8	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	540753	A	A	540753	4	1	106	1	0	0	0	0	0	1	0	0	11751	637	22	2	78	2	PDGFA	7	540753	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08		540753	158597910	751	103446											
INTS1	26173	broad.mit.edu	37	chr7	1519028	1519028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggaggcagagccctcaCtgccctcctcccccgcaaga	11	18	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1519028	A	A	1519028	1	1	106	0	1	0	0	0	0	0	0	0	7845	580	20	3		3	INTS1	7	1519028	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	978275	1519028	157619635	752	103447											
C7orf27	221927	broad.mit.edu	37	chr7	2582880	2582880	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagccaggggtcccatgTgggtgggacccaggcagctc	15	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2582880	C	C	2582880	3	2	106	1	0	0	0	0	1	0	0	0	2407	1696	59	5	1620	5	C7orf27	7	2582880	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	1063852	2582880	156555783	753	103448											
CARD11	84433	broad.mit.edu	37	chr7	2957068	2957068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgggcttggcaggagGggagaacacaatgatgctgg	17	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2957068	T	T	2957068	1	4	106	0	1	0	0	0	0	0	0	0	2671	1247	43	2		2	CARD11	7	2957068	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	374188	2957068	156181595	754	103449											
CARD11	84433	broad.mit.edu	37	chr7	2985553	2985553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagaagaccacatagccCctttgccccttggtatgtag	8	13	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2985553	A	A	2985553	3	1	106	1	0	0	0	0	1	0	0	0	2671	622	22	2	3294	2	CARD11	7	2985553	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	28485	2985553	156153110	755	103450											
SDK1	221935	broad.mit.edu	37	chr7	4153708	4153708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacgggaaccccgagtccGtgggctacaggattaagtac	12	11	0	0	rs142268038		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4153708	T	T	4153708	3	4	106	1	0	0	0	0	1	0	0	0	14081	1145	40	3	3723	3	SDK1	7	4153708	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1168155	4153708	154984955	756	103451											
RNF216	54476	broad.mit.edu	37	chr7	5760560	5760560	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatatccaaatttaacagtCtgaagaaaagggaaatctta	6	5	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5760560	A	A	5760560	1	1	106	0	1	0	0	0	0	0	0	0	13591	928	32	3		3	RNF216	7	5760560	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1606852	5760560	153378103	757	103452											
RSPH10B2	728194	broad.mit.edu	37	chr7	6006564	6006564	+	Frame_Shift_Del	DEL	G	-	-													ttcgttctgctgaacgttttGgcggtcttttttgggtttca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6006564	-	-	6006564	7	5	106	1	0	1	0	1	0	0	0	0	13815	1357	47	0	2504	0	RSPH10B2	7	6006564	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	246004	6006564	153132099	758	103453											
MIOS	54468	broad.mit.edu	37	chr7	7634818	7634818	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgttgatgttcaatttaAtaagttactattagctcatt	5	5	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7634818	G	G	7634818	1	3	106	0	1	0	0	0	0	0	0	0	9682	116	4	5		5	MIOS	7	7634818	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1628254	7634818	151503845	759	103454											
NDUFA4	4697	broad.mit.edu	37	chr7	10979455	10979455	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctgtcagacaaaaccCcacaatgcatggcgtagagg	9	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10979455	G	G	10979455	1	3	106	0	1	0	0	0	0	0	0	0	10361	638	22	4		4	NDUFA4	7	10979455	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3344637	10979455	148159208	760	103455											
PHF14	9678	broad.mit.edu	37	chr7	11022088	11022088	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaagaaaatattttagaaGaagaactgaatgaagatatt	8	2	0	8			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11022088	T	T	11022088	4	4	106	1	0	0	0	0	0	1	0	0	11920	943	33	3	212	3	PHF14	7	11022088	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	42633	11022088	148116575	761	103456											
PHF14	9678	broad.mit.edu	37	chr7	11068427	11068427	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaaggaaggtctgctttcAgaggcagcggcggaagaggt	16	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11068427	T	T	11068427	2	4	106	1	0	0	0	0	0	0	0	1	11920	175	7	5		5	PHF14	7	11068427	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	46339	11068427	148070236	762	103457											
THSD7A	221981	broad.mit.edu	37	chr7	11582602	11582602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctaccttttttcccttgCtgatcattacagttttcata	3	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11582602	A	A	11582602	3	1	106	1	0	0	0	0	1	0	0	0	16002	796	28	3	3469	3	THSD7A	7	11582602	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	514175	11582602	147556061	763	103458											
DGKB	1607	broad.mit.edu	37	chr7	14216490	14216490	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggggtctgcatccatggctCcccatcaatttgcattggca	10	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14216490	A	A	14216490	4	1	106	1	0	0	0	0	0	1	0	0	4506	864	30	3	156	3	DGKB	7	14216490	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2633888	14216490	144922173	764	103459											
DGKB	1607	broad.mit.edu	37	chr7	14797230	14797230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgtttattaagaaatacCctcttccaagcatatatacg	4	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797230	A	A	14797230	1	1	106	0	1	0	0	0	0	0	0	0	4506	638	22	2		2	DGKB	7	14797230	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	580740	14797230	144341433	765	103460											
TMEM195	392636	broad.mit.edu	37	chr7	15433593	15433593	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagatgaggcttgtaccaaAgaagatagaaaagaagaaac	12	4	0	7			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15433593	G	G	15433593	1	3	106	0	1	0	0	0	0	0	0	0	16240	87	3	5		5	TMEM195	7	15433593	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	636363	15433593	143705070	766	103461											
PRPS1L1	221823	broad.mit.edu	37	chr7	18067033	18067033	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatgtaggtccatggtgaTgatatgatccgcacctgcta	11	9	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18067033	A	A	18067033	3	1	106	1	0	0	0	0	1	0	0	0	12685	1464	51	5	587	5	PRPS1L1	7	18067033	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	2633440	18067033	141071630	767	103462											
DNAH11	8701	broad.mit.edu	37	chr7	21599211	21599211	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaattattttattatcttaAtgtttgtaggccaccgtcaa	6	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21599211	T	T	21599211	1	4	106	0	1	0	0	0	0	0	0	0	4639	116	4	5		5	DNAH11	7	21599211	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3532178	21599211	137539452	768	103463											
DNAH11	8701	broad.mit.edu	37	chr7	21631013	21631013	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttggagcacagagttgagCgcacacagaaaaacgtgaag	13	7	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21631013	T	T	21631013	3	4	106	1	0	0	0	0	1	0	0	0	4639	768	27	4	2539	4	DNAH11	7	21631013	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	31802	21631013	137507650	769	103464											
STK31	56164	broad.mit.edu	37	chr7	23826529	23826529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgttcaagccaacatgCctttaaattcagaagtaagt	7	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23826529	A	A	23826529	3	1	106	1	0	0	0	0	1	0	0	0	15414	739	26	3	2551	3	STK31	7	23826529	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2195516	23826529	135312134	770	103465											
OSBPL3	26031	broad.mit.edu	37	chr7	24910524	24910524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagaagcagtagtcacatcCctgacacacccttccacatc	5	15	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24910524	A	A	24910524	1	1	106	0	1	0	0	0	0	0	0	0	11373	638	22	2		2	OSBPL3	7	24910524	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1083995	24910524	134228139	771	103466											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26240186	26240186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactcattgatttcaaaccCgttacctccatcgcggactc	5	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26240186	A	A	26240186	1	1	106	0	1	0	0	0	0	0	0	0	7326	667	23	1		1	HNRNPA2B1	7	26240186	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1329662	26240186	132898477	772	103467											
SKAP2	8935	broad.mit.edu	37	chr7	26779578	26779578	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcaattggaggaaactGggctcctatgagaagttggg	15	6	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26779578	A	A	26779578	4	1	106	1	0	0	0	0	0	1	0	0	14469	1357	47	4	798	4	SKAP2	7	26779578	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	539392	26779578	132359085	773	103468											
SKAP2	8935	broad.mit.edu	37	chr7	26779701	26779701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaattgtttaaatctaaGtctattagctttgtttcaga	6	5	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26779701	T	T	26779701	1	4	106	0	1	0	0	0	0	0	0	0	14469	1044	36	3		3	SKAP2	7	26779701	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	123	26779701	132358962	774	103469											
HOXA1	3198	broad.mit.edu	37	chr7	27135327	27135327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggcgatggtggtggtGgtggtggtggtggggcgaac	26	3	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27135327	T	T	27135327	3	4	106	1	0	0	0	0	1	0	0	0	7355	1348	47	2	810	2	HOXA1	7	27135327	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	355626	27135327	132003336	775	103470											
HOXA2	3199	broad.mit.edu	37	chr7	27140626	27140626	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggtgctgaaaatgtttcaGatttttctcattgctggtta	9	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27140626	T	T	27140626	3	4	106	1	0	0	0	0	1	0	0	0	7359	933	33	3	284	3	HOXA2	7	27140626	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	5299	27140626	131998037	776	103471											
HOXA3	3200	broad.mit.edu	37	chr7	27147954	27147954	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggggggcagcccgtaGgtaccctgggggggcttgga	22	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27147954	T	T	27147954	2	4	106	1	0	0	0	0	0	0	0	1	7360	987	35	2		2	HOXA3	7	27147954	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	7328	27147954	131990709	777	103472											
HOXA7	3204	broad.mit.edu	37	chr7	27196029	27196029	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggaacggtcgaggcgaaggCgccggcgcccgccccgtagc	17	16	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27196029	G	G	27196029	3	3	106	1	0	0	0	0	1	0	0	0	7364	768	27	4	564	4	HOXA7	7	27196029	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	48075	27196029	131942634	778	103473											
WIPF3	644150	broad.mit.edu	37	chr7	29924315	29924315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcagagatggacaccagGggtgagggaggcagagagac	18	6	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29924315	T	T	29924315	1	4	106	0	1	0	0	0	0	0	0	0	17496	1247	43	2		2	WIPF3	7	29924315	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2728286	29924315	129214348	779	103474											
SCRN1	9805	broad.mit.edu	37	chr7	29966088	29966088	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcactttcgatgatggCacgtgcccactcgtgggctt	12	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29966088	T	T	29966088	3	4	106	1	0	0	0	0	1	0	0	0	14051	710	25	4	186	4	SCRN1	7	29966088	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	41773	29966088	129172575	780	103475											
SCRN1	9805	broad.mit.edu	37	chr7	29980415	29980415	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaaccttggctctgagCgtaactcctgagttccggat	9	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29980415	G	G	29980415	3	3	106	1	0	0	0	0	1	0	0	0	14051	768	27	4	638	4	SCRN1	7	29980415	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	14327	29980415	129158248	781	103476											
BBS9	27241	broad.mit.edu	37	chr7	33545221	33545221	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggttgctattctggaagcGgcatttctgccgctacaaga	11	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33545221	A	A	33545221	2	1	106	1	0	0	0	0	0	0	0	1	1347	1103	39	4		4	BBS9	7	33545221	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	3564806	33545221	125593442	782	103477											
KIAA0895	23366	broad.mit.edu	37	chr7	36396906	36396906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtaccactgcttgtcaCaggcaccagggctttcatcc	8	15	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36396906	A	A	36396906	3	1	106	1	0	0	0	0	1	0	0	0	8267	478	17	3	1110	3	KIAA0895	7	36396906	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2851685	36396906	122741757	783	103478											
AOAH	313	broad.mit.edu	37	chr7	36553071	36553071	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcccacgtgctttctgccaGagacagcctctaggatggcc	10	14	2	1	rs118070659	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36553071	C	C	36553071	1	2	106	0	1	0	0	0	0	0	0	0	728	957	33	4		4	AOAH	7	36553071	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	156165	36553071	122585592	784	103479											
GPR141	353345	broad.mit.edu	37	chr7	37780650	37780650	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactctttactatcccacCaggagttctgggctcagctg	9	14	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37780650	A	A	37780650	3	1	106	1	0	0	0	0	1	0	0	0	6714	595	21	2	657	2	GPR141	7	37780650	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1227579	37780650	121358013	785	103480											
TXNDC3	51314	broad.mit.edu	37	chr7	37901757	37901757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgacctcaggtaatactttGgattaacaacagtttgaaga	8	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37901757	T	T	37901757	1	4	106	0	1	0	0	0	0	0	0	0	16924	1363	47	2		2	TXNDC3	7	37901757	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	121107	37901757	121236906	786	103481											
AMPH	273	broad.mit.edu	37	chr7	38516622	38516622	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatggacataagagtctcCctttgacagccaggtgccaa	10	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38516622	T	T	38516622	1	4	106	0	1	0	0	0	0	0	0	0	588	638	22	4		4	AMPH	7	38516622	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	614865	38516622	120622041	787	103482											
HECW1	23072	broad.mit.edu	37	chr7	43283518	43283518	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcattatgctgctgcaccTgtgtagtgtgaaggtcagtg	14	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43283518	A	A	43283518	3	1	106	1	0	0	0	0	1	0	0	0	7109	1580	55	5	16	5	HECW1	7	43283518	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	4766896	43283518	115855145	788	103483											
NPC1L1	29881	broad.mit.edu	37	chr7	44573287	44573287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaactcctaggccccggCactaacccagcaagcctaat	9	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44573287	A	A	44573287	1	1	106	0	1	0	0	0	0	0	0	0	10666	725	25	3		3	NPC1L1	7	44573287	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1289769	44573287	114565376	789	103484											
DDX56	54606	broad.mit.edu	37	chr7	44605694	44605694	+	Intron	SNP	C	A	A													gctctctaaggaggcaaagtCacaggttagttgggggaatc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44605694	A	A	44605694	1	1	106	0	1	0	0	0	0	0	0	0	4407	841	29	3		3	DDX56	7	44605694	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	32407	44605694	114532969	790	103485	453	2									
DDX56	54606	broad.mit.edu	37	chr7	44605696	44605696	+	Intron	SNP	C	A	A													tctctaaggaggcaaagtcaCaggttagttgggggaatcag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44605696	A	A	44605696	1	1	106	0	1	0	0	0	0	0	0	0	4407	493	17	3		3	DDX56	7	44605696	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2	44605696	114532967	791	103486	453	2									
OGDH	4967	broad.mit.edu	37	chr7	44735844	44735844	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacaatgcacagttgtatgCaccatttcagcaaagccccc	6	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44735844	T	T	44735844	1	4	106	0	1	0	0	0	0	0	0	0	10934	725	25	4		4	OGDH	7	44735844	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	130148	44735844	114402819	792	103487											
MYO1G	64005	broad.mit.edu	37	chr7	45011815	45011815	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcttgtcctcactgcCtctcagcaactagaggacac	8	15	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45011815	G	G	45011815	3	3	106	1	0	0	0	0	1	0	0	0	10168	681	24	4	2496	4	MYO1G	7	45011815	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	275971	45011815	114126848	793	103488											
IGFBP1	3484	broad.mit.edu	37	chr7	45932543	45932543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgctgctcttgaccttGgtcttgtctttgcagtgtga	10	10	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45932543	T	T	45932543	1	4	106	0	1	0	0	0	0	0	0	0	7648	1363	47	2		2	IGFBP1	7	45932543	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	920728	45932543	113206120	794	103489											
PKD1L1	168507	broad.mit.edu	37	chr7	47925686	47925686	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcagtgttagaattttgCagcaaaaatataaaatattt	7	3	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47925686	T	T	47925686	1	4	106	0	1	0	0	0	0	0	0	0	12059	725	25	4		4	PKD1L1	7	47925686	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1993143	47925686	111212977	795	103490											
ABCA13	154664	broad.mit.edu	37	chr7	48316262	48316262	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaaacagtatttgtatcTaatacctttgaaagatcttt	4	6	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48316262	C	C	48316262	1	2	106	0	1	0	0	0	0	0	0	0	31	1537	53	5		5	ABCA13	7	48316262	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	390576	48316262	110822401	796	103491											
ABCA13	154664	broad.mit.edu	37	chr7	48452087	48452087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccaaaggacacagacaaGgcctgcttgaaagggctctt	10	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48452087	T	T	48452087	3	4	106	1	0	0	0	0	1	0	0	0	31	991	35	2	12357	2	ABCA13	7	48452087	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	135825	48452087	110686576	797	103492											
ABCA13	154664	broad.mit.edu	37	chr7	48619720	48619720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaactaattgttttaaatAaactgcagtggacttgttat	7	4	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48619720	T	T	48619720	1	4	106	0	1	0	0	0	0	0	0	0	31	377	13	5		5	ABCA13	7	48619720	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	167633	48619720	110518943	798	103493											
DDC	1644	broad.mit.edu	37	chr7	50596906	50596906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccccacaacacactcacCtgatcggatgagtaagccac	6	16	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50596906	A	A	50596906	3	1	106	1	0	0	0	0	1	0	0	0	4358	695	24	2	912	2	DDC	7	50596906	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1977186	50596906	108541757	799	103494											
COBL	23242	broad.mit.edu	37	chr7	51096651	51096651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtaacatcgcatctctgaCtttggaggaatgattttata	8	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51096651	A	A	51096651	3	1	106	1	0	0	0	0	1	0	0	0	3685	564	20	3	1659	3	COBL	7	51096651	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	499745	51096651	108042012	800	103495											
COBL	23242	broad.mit.edu	37	chr7	51111277	51111277	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcactcctgagtcctcggtCgtgtcctccgacgcaaaaca	8	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51111277	A	A	51111277	2	1	106	1	0	0	0	0	0	0	0	1	3685	871	31	3		3	COBL	7	51111277	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	14626	51111277	108027386	801	103496											
VSTM2A	222008	broad.mit.edu	37	chr7	54612473	54612473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccggggccgagggggccGgcgcgcaggtagcggagccc	20	14	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54612473	T	T	54612473	3	4	106	1	0	0	0	0	1	0	0	0	17356	1116	39	1	244	1	VSTM2A	7	54612473	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3501196	54612473	104526190	802	103497											
VSTM2A	222008	broad.mit.edu	37	chr7	54617601	54617601	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaaaggatgaaggcttAtatgagtgcagggtgactga	15	3	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54617601	T	T	54617601	3	4	106	1	0	0	0	0	1	0	0	0	17356	446	16	5	386	5	VSTM2A	7	54617601	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	5128	54617601	104521062	803	103498											
ZNF713	349075	broad.mit.edu	37	chr7	55991322	55991322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcagctttgtaagccagaGgtaatcgcgcagttggagct	12	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55991322	T	T	55991322	3	4	106	1	0	0	0	0	1	0	0	0	18245	991	35	2	208	2	ZNF713	7	55991322	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1373721	55991322	103147341	804	103499											
RABGEF1	27342	broad.mit.edu	37	chr7	66264318	66264318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctttagagccctgcGctgggttacgcctcagatgc	10	14	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66264318	T	T	66264318	3	4	106	1	0	0	0	0	1	0	0	0	13074	1087	38	3	759	3	RABGEF1	7	66264318	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	10272996	66264318	92874345	805	103500											
WBSCR17	64409	broad.mit.edu	37	chr7	71142007	71142007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagacctagcatccatgcCatccaccttaagacttgatc	6	14	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71142007	A	A	71142007	1	1	106	0	1	0	0	0	0	0	0	0	17391	609	21	2		2	WBSCR17	7	71142007	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4877689	71142007	87996656	806	103501											
HIP1	3092	broad.mit.edu	37	chr7	75221302	75221302	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaatttatttcaccctcCagtccttgctctgtggcctc	7	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75221302	T	T	75221302	1	4	106	0	1	0	0	0	0	0	0	0	7181	609	21	4		4	HIP1	7	75221302	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4079295	75221302	83917361	807	103502											
YWHAG	7532	broad.mit.edu	37	chr7	75987970	75987970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagggcgacgaagccccgGgccttccacgccaaggaccg	14	16	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75987970	T	T	75987970	1	4	106	0	1	0	0	0	0	0	0	0	17630	1247	43	2		2	YWHAG	7	75987970	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	766668	75987970	83150693	808	103503											
ZP3	7784	broad.mit.edu	37	chr7	76054722	76054722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtaggtggggaggtggcCcagttgaggcctgaagctgg	19	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76054722	A	A	76054722	1	1	106	0	1	0	0	0	0	0	0	0	18346	638	22	2		2	ZP3	7	76054722	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	66752	76054722	83083941	809	103504											
PION	54103	broad.mit.edu	37	chr7	76983010	76983010	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttaaatctgctctctgcctCcactaccaaagaagtacaaa	4	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76983010	A	A	76983010	1	1	106	0	1	0	0	0	0	0	0	0	12029	870	30	3		3	PION	7	76983010	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	928288	76983010	82155653	810	103505											
CACNA2D1	781	broad.mit.edu	37	chr7	81799836	81799836	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacacaatatgtcaagctatTtaaatcaagtagttaaaagg	6	5	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81799836	A	A	81799836	1	1	106	0	1	0	0	0	0	0	0	0	2574	1856	64	5		5	CACNA2D1	7	81799836	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	4816826	81799836	77338827	811	103506											
PCLO	27445	broad.mit.edu	37	chr7	82387821	82387821	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaacttagctttgtacaaTagtattcaactatagtcttg	5	7	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82387821	C	C	82387821	1	2	106	0	1	0	0	0	0	0	0	0	11677	1421	49	5		5	PCLO	7	82387821	3'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	587985	82387821	76750842	812	103507											
PCLO	27445	broad.mit.edu	37	chr7	82453745	82453745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaatacctgaaaaaaagtGtaacaaataaatgaaattta	4	4	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82453745	T	T	82453745	1	4	106	0	1	0	0	0	0	0	0	0	11677	1392	48	3		3	PCLO	7	82453745	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	65924	82453745	76684918	813	103508											
SEMA3A	10371	broad.mit.edu	37	chr7	83640407	83640407	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcattaggaatacatccTctgtttaaaaacaaaattgg	6	6	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83640407	C	C	83640407	3	2	106	1	0	0	0	0	1	0	0	0	14137	1565	54	5	1425	5	SEMA3A	7	83640407	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	1186662	83640407	75498256	814	103509											
GRM3	2913	broad.mit.edu	37	chr7	86415735	86415735	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatcttgcgcttcttcaaCtggacctacgtgtccacagt	9	12	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86415735	T	T	86415735	2	4	106	1	0	0	0	0	0	0	0	1	6864	564	20	4		4	GRM3	7	86415735	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2775328	86415735	72722928	815	103510											
CROT	54677	broad.mit.edu	37	chr7	87011391	87011391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcttccctattttcaggGttcagagaaggtacgagata	10	7	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87011391	T	T	87011391	3	4	106	1	0	0	0	0	1	0	0	0	3926	1275	44	3	1190	3	CROT	7	87011391	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	595656	87011391	72127272	816	103511											
ABCB4	5244	broad.mit.edu	37	chr7	87081269	87081269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcttccccacctaaacaCcgcacaaaggaagaaattca	4	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87081269	A	A	87081269	1	1	106	0	1	0	0	0	0	0	0	0	43	522	18	3		3	ABCB4	7	87081269	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	69878	87081269	72057394	817	103512											
ABCB1	5243	broad.mit.edu	37	chr7	87174432	87174432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttagtaactgcagaaaaGgataaagctaatctgctgtg	10	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87174432	T	T	87174432	1	4	106	0	1	0	0	0	0	0	0	0	40	1015	35	2		2	ABCB1	7	87174432	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	93163	87174432	71964231	818	103513											
STEAP4	79689	broad.mit.edu	37	chr7	87913403	87913403	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatagctcaagacttctgcaCcactgggcagtagggtggtc	12	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87913403	T	T	87913403	3	4	106	1	0	0	0	0	1	0	0	0	15398	507	18	4	1213	4	STEAP4	7	87913403	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	738971	87913403	71225260	819	103514											
ZNF804B	219578	broad.mit.edu	37	chr7	88963931	88963931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatagctaatccggattgGgaaaaattccagaggaaata	10	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88963931	T	T	88963931	3	4	106	1	0	0	0	0	1	0	0	0	18300	1241	43	2	1649	2	ZNF804B	7	88963931	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1050528	88963931	70174732	820	103515											
GTPBP10	85865	broad.mit.edu	37	chr7	89975866	89975866	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atagataaaacgccttctctCcccacccgtggggtgcaaag	9	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89975866	T	T	89975866	1	4	106	0	1	0	0	0	0	0	0	0	6944	870	30	4		4	GTPBP10	7	89975866	5'Flank	SNP	C	TCGA-44-2656-01A-02D-0969-08	1011935	89975866	69162797	821	103516											
SAMD9L	219285	broad.mit.edu	37	chr7	92764820	92764820	+	Frame_Shift_Del	DEL	C	-	-													gtcaattgttcaggttttagCttaccctttttcttgtgttt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92764820	-	-	92764820	7	5	106	1	0	1	0	1	0	0	0	0	13938	796	28	0	4293	0	SAMD9L	7	92764820	Frame_Shift_Del	DEL	C	TCGA-44-2656-01A-02D-0969-08	2788954	92764820	66373843	822	103517											
COL1A2	1278	broad.mit.edu	37	chr7	94046983	94046983	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattcttctagagtttgattCttcattttcttctttctcca	3	9	7	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94046983	A	A	94046983	1	1	106	0	1	0	0	0	0	0	0	0	3710	928	32	3		3	COL1A2	7	94046983	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1282163	94046983	65091680	823	103518											
COL1A2	1278	broad.mit.edu	37	chr7	94048918	94048918	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaaaatttcccgccttccCtagtcccaaagagccccagc	5	17	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94048918	T	T	94048918	1	4	106	0	1	0	0	0	0	0	0	0	3710	696	24	4		4	COL1A2	7	94048918	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1935	94048918	65089745	824	103519											
TECPR1	25851	broad.mit.edu	37	chr7	97872932	97872932	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaagtgagaaatggtagCagtcagcgcccagtgggcac	15	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97872932	A	A	97872932	1	1	106	0	1	0	0	0	0	0	0	0	15865	725	25	3		3	TECPR1	7	97872932	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3824014	97872932	61265731	825	103520											
SMURF1	57154	broad.mit.edu	37	chr7	98633309	98633309	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcgacttccagtcgttcaAgtctattttatccaggccgc	8	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98633309	C	C	98633309	3	2	106	1	0	0	0	0	1	0	0	0	14933	69	3	5	367	5	SMURF1	7	98633309	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	760377	98633309	60505354	826	103521											
CYP3A7	1551	broad.mit.edu	37	chr7	99311280	99311280	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggagaccagaaatctgatGggtgttgcctgagtcaccag	13	8	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99311280	A	A	99311280	1	1	106	0	1	0	0	0	0	0	0	0	4214	1363	47	4		4	CYP3A7	7	99311280	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	677971	99311280	59827383	827	103522											
CYP3A43	64816	broad.mit.edu	37	chr7	99445079	99445079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagatctctaaaacttacGtaggacaaactgcttctgct	8	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99445079	T	T	99445079	1	4	106	0	1	0	0	0	0	0	0	0	4212	1160	40	3		3	CYP3A43	7	99445079	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	133799	99445079	59693584	828	103523											
SPDYE3	441272	broad.mit.edu	37	chr7	99913517	99913517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctaacgcacggccaggGggagggcgcagcttccaaac	14	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99913517	T	T	99913517	1	4	106	0	1	0	0	0	0	0	0	0	15148	1247	43	2		2	SPDYE3	7	99913517	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	468438	99913517	59225146	829	103524											
ZAN	7455	broad.mit.edu	37	chr7	100350034	100350034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacagaaaaacccaccatctCcccagaaaaactcaccatcc	2	18	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100350034	A	A	100350034	3	1	106	1	0	0	0	0	1	0	0	0	17640	855	30	3	2356	3	ZAN	7	100350034	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	436517	100350034	58788629	830	103525											
MUC17	140453	broad.mit.edu	37	chr7	100678604	100678604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacccttttaacaactcctGttgacactaaaggtcctgtg	7	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100678604	T	T	100678604	3	4	106	1	0	0	0	0	1	0	0	0	10068	1377	48	3	3917	3	MUC17	7	100678604	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	328570	100678604	58460059	831	103526											
MUC17	140453	broad.mit.edu	37	chr7	100680895	100680895	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggtaacaccctttcaacAactcctgttgactccaaaac	6	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100680895	C	C	100680895	2	2	106	1	0	0	0	0	0	0	0	1	10068	117	5	5		5	MUC17	7	100680895	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	2291	100680895	58457768	832	103527											
CUX1	1523	broad.mit.edu	37	chr7	101840603	101840603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgagagactggcgttgGgtggcgccagcgtgcgagcc	20	9	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101840603	T	T	101840603	1	4	106	0	1	0	0	0	0	0	0	0	4097	1247	43	2		2	CUX1	7	101840603	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1159708	101840603	57298060	833	103528											
COG5	10466	broad.mit.edu	37	chr7	107188899	107188899	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttttgtcaccatcctaatCcaagcaaccagtatctttta	3	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107188899	A	A	107188899	1	1	106	0	1	0	0	0	0	0	0	0	3693	870	30	3		3	COG5	7	107188899	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5348296	107188899	51949764	834	103529											
SLC26A3	1811	broad.mit.edu	37	chr7	107417228	107417229	+	Intron	INS	-	TTTGGTTAGT	TTTGGTTAGT													ctaacactgactttttccagINScataccaaagcaggctcact					rs58589956		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTTGGTTAGT	107417229	TTTGGTTAGT	TTTGGTTAGT	107417228	6	5	106	0	1	1	1	0	0	0	0	0	14632	986	34	0		0	SLC26A3	7	107417228	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	228329	107417228	51721435	835	103530											
LAMB4	22798	broad.mit.edu	37	chr7	107745083	107745083	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgcattgtgcaataaatAgagcgttgaaagagggcttg	12	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107745083	G	G	107745083	1	3	106	0	1	0	0	0	0	0	0	0	8685	435	15	5		5	LAMB4	7	107745083	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	327855	107745083	51393580	836	103531											
TFEC	22797	broad.mit.edu	37	chr7	115580562	115580562	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataattgcatagcaccagCatagaattgctttccagttg	8	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115580562	A	A	115580562	1	1	106	0	1	0	0	0	0	0	0	0	15925	725	25	3		3	TFEC	7	115580562	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	7835479	115580562	43558101	837	103532											
C7orf58	79974	broad.mit.edu	37	chr7	120737691	120737691	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatacagcatactctatttTcaaagcagttccagaaagaa	5	8	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120737691	C	C	120737691	1	2	106	0	1	0	0	0	0	0	0	0	2430	1798	62	5		5	C7orf58	7	120737691	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	5157129	120737691	38400972	838	103533											
C7orf58	79974	broad.mit.edu	37	chr7	120911454	120911455	+	Missense_Mutation	DNP	AC	TA	TA													gggcgttacaaagagtttctAcaggggaagtgtggatgtca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	120911455	TA	TA	120911454	3	4	106	1	0	0	0	0	1	0	0	0	2430	378	14	5	2966	5	C7orf58	7	120911454	Missense_Mutation	DNP	AC	TCGA-44-2656-01A-02D-0969-08	173763	120911454	38227209	839	103534											
PTPRZ1	5803	broad.mit.edu	37	chr7	121623757	121623757	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccattcatactgttgaacCttctgccaaactcaactgac	4	13	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121623757	G	G	121623757	3	3	106	1	0	0	0	0	1	0	0	0	12922	681	24	4	684	4	PTPRZ1	7	121623757	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	712303	121623757	37514906	840	103535											
ASB15	142685	broad.mit.edu	37	chr7	123257663	123257664	+	Missense_Mutation	DNP	CC	AA	AA													gacactctgggaattcaagaCctgtgatggagaaacaccct							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	123257664	AA	AA	123257663	3	1	106	1	0	0	0	0	1	0	0	0	1023	507	18	3	337	3	ASB15	7	123257663	Missense_Mutation	DNP	CC	TCGA-44-2656-01A-02D-0969-08	1633906	123257663	35881000	841	103536											
GPR37	2861	broad.mit.edu	37	chr7	124386577	124386577	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgacccaaccaagtactgtcCttcagcaatgagttccgaca	7	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124386577	G	G	124386577	1	3	106	0	1	0	0	0	0	0	0	0	6756	696	24	4		4	GPR37	7	124386577	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	1128914	124386577	34752086	842	103537											
POT1	25913	broad.mit.edu	37	chr7	124511120	124511120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacaaaaatattttacCtgactttcaatattttaaag	2	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124511120	A	A	124511120	1	1	106	0	1	0	0	0	0	0	0	0	12355	696	24	2		2	POT1	7	124511120	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	124543	124511120	34627543	843	103538											
GRM8	2918	broad.mit.edu	37	chr7	126173069	126173069	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaaccaaatgatgcaggtGgtatacatggtaaatccaat	9	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126173069	A	A	126173069	2	1	106	1	0	0	0	0	0	0	0	1	6869	1335	47	4		4	GRM8	7	126173069	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1661949	126173069	32965594	844	103539											
GRM8	2918	broad.mit.edu	37	chr7	126173340	126173340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacggagatgaggctgaagGtgatcaccagctgagatgct	16	7	1	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126173340	T	T	126173340	3	4	106	1	0	0	0	0	1	0	0	0	6869	1261	44	3	692	3	GRM8	7	126173340	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	271	126173340	32965323	845	103540											
SND1	27044	broad.mit.edu	37	chr7	127339010	127339010	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcatgagagctaataagtAagtattcattactccgctgt	9	7	1	1	rs147567302	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127339010	T	T	127339010	1	4	106	0	1	0	0	0	0	0	0	0	14958	377	13	5		5	SND1	7	127339010	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1165670	127339010	31799653	846	103541											
CALU	813	broad.mit.edu	37	chr7	128394426	128394426	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatttacgaggatgtagagcGacagtggaaggggcatgacc	16	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128394426	T	T	128394426	1	4	106	0	1	0	0	0	0	0	0	0	2620	1058	37	3		3	CALU	7	128394426	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1055416	128394426	30744237	847	103542											
CCDC136	64753	broad.mit.edu	37	chr7	128450286	128450286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaagctgatacagaacCaagactgtgtattaaaagaa	9	5	0	6	rs116868322	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128450286	A	A	128450286	3	1	106	1	0	0	0	0	1	0	0	0	2796	595	21	2	1940	2	CCDC136	7	128450286	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	55860	128450286	30688377	848	103543											
TSPAN33	340348	broad.mit.edu	37	chr7	128806740	128806740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgttgcttgcctactcCtgaccaggtgagccagcatc	9	15	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128806740	A	A	128806740	3	1	106	1	0	0	0	0	1	0	0	0	16773	681	24	2	603	2	TSPAN33	7	128806740	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	356454	128806740	30331923	849	103544											
KLF14	136259	broad.mit.edu	37	chr7	130417831	130417831	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggatgggcagagagaaaGcagggacaacggcctggggg	20	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130417831	T	T	130417831	1	4	106	0	1	0	0	0	0	0	0	0	8413	986	34	3		3	KLF14	7	130417831	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	1611091	130417831	28720832	850	103545											
PLXNA4	91584	broad.mit.edu	37	chr7	131844132	131844132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagccagtgattattccCctcagatctctaccccagcc	5	18	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131844132	A	A	131844132	1	1	106	0	1	0	0	0	0	0	0	0	12217	638	22	2		2	PLXNA4	7	131844132	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1426301	131844132	27294531	851	103546											
PLXNA4	91584	broad.mit.edu	37	chr7	131866251	131866251	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgttgaggatgagcagGgactggacgttgtccaggat	16	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131866251	A	A	131866251	2	1	106	1	0	0	0	0	0	0	0	1	12217	1219	43	4		4	PLXNA4	7	131866251	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	22119	131866251	27272412	852	103547											
CALD1	800	broad.mit.edu	37	chr7	134653160	134653160	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtagagggctaattcGctctgttttgtatttatgtt	10	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134653160	T	T	134653160	1	4	106	0	1	0	0	0	0	0	0	0	2607	1102	38	3		3	CALD1	7	134653160	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	2786909	134653160	24485503	853	103548											
CNOT4	4850	broad.mit.edu	37	chr7	135048035	135048035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaaccaaaaggaaagaCagaagagattacaattttaa	7	5	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135048035	A	A	135048035	1	1	106	0	1	0	0	0	0	0	0	0	3653	493	17	3		3	CNOT4	7	135048035	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	394875	135048035	24090628	854	103549											
NUP205	23165	broad.mit.edu	37	chr7	135310154	135310154	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagaagtcgttttctcttgGctatagatgtattaaagaaa	8	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135310154	C	C	135310154	1	2	106	0	1	0	0	0	0	0	0	0	10854	1218	42	4		4	NUP205	7	135310154	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	262119	135310154	23828509	855	103550											
DGKI	9162	broad.mit.edu	37	chr7	137096788	137096788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaaaagaacatcctgcCtcttctacccagccagtgca	5	15	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137096788	A	A	137096788	1	1	106	0	1	0	0	0	0	0	0	0	4511	696	24	2		2	DGKI	7	137096788	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1786634	137096788	22041875	856	103551											
CREB3L2	64764	broad.mit.edu	37	chr7	137600584	137600584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacgaaaattgagcataccCcagtgttcatttccagagga	9	9	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137600584	A	A	137600584	3	1	106	1	0	0	0	0	1	0	0	0	3889	637	22	2	1108	2	CREB3L2	7	137600584	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	503796	137600584	21538079	857	103552											
CLEC5A	23601	broad.mit.edu	37	chr7	141645062	141645062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatttcttgggaaaggaGgctgtgtggaaggtctctag	15	4	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141645062	T	T	141645062	1	4	106	0	1	0	0	0	0	0	0	0	3551	1015	35	2		2	CLEC5A	7	141645062	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4044478	141645062	17493601	858	103553											
MGAM	8972	broad.mit.edu	37	chr7	141734530	141734530	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacccgttctacctttgcGggctctggcaagtttgcagc	11	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141734530	T	T	141734530	2	4	106	1	0	0	0	0	0	0	0	1	9634	1103	39	1		1	MGAM	7	141734530	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	89468	141734530	17404133	859	103554											
MGAM	8972	broad.mit.edu	37	chr7	141755465	141755465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggggaaactgagcacaggtCctataggagagacttggagt	15	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141755465	A	A	141755465	3	1	106	1	0	0	0	0	1	0	0	0	9634	855	30	3	3528	3	MGAM	7	141755465	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	20935	141755465	17383198	860	103555											
MGAM	8972	broad.mit.edu	37	chr7	141765177	141765177	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgaggggtcgtcatcacCcgctccacatttccctcttc	8	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141765177	A	A	141765177	2	1	106	1	0	0	0	0	0	0	0	1	9634	610	22	2		2	MGAM	7	141765177	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	9712	141765177	17373486	861	103556											
TRYX3	136541	broad.mit.edu	37	chr7	141955557	141955557	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catcaccagaaaaacttcagGaaagtcatttaataggctcc	6	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141955557	A	A	141955557	1	1	106	0	1	0	0	0	0	0	0	0	16729	1189	41	4		4	TRYX3	7	141955557	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	190380	141955557	17183106	862	103557											
TRPV5	56302	broad.mit.edu	37	chr7	142625790	142625790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagcgtctcttaccacaGtgttaccctccactccagcc	9	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142625790	T	T	142625790	3	4	106	1	0	0	0	0	1	0	0	0	16724	1029	36	3	1471	3	TRPV5	7	142625790	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	670233	142625790	16512873	863	103558											
KEL	3792	broad.mit.edu	37	chr7	142651692	142651692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggaggtggggaatataCcatgggagatggccttggga	20	4	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142651692	A	A	142651692	1	1	106	0	1	0	0	0	0	0	0	0	8212	522	18	3		3	KEL	7	142651692	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	25902	142651692	16486971	864	103559											
OR2F2	135948	broad.mit.edu	37	chr7	143633070	143633070	+	Frame_Shift_Del	DEL	G	-	-													cctctcacctcacggtggttGccctgtgctacggcacaacg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143633070	-	-	143633070	7	5	106	1	0	1	0	1	0	0	0	0	11091	1319	46	0	747	0	OR2F2	7	143633070	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	981378	143633070	15505593	865	103560											
NOBOX	135935	broad.mit.edu	37	chr7	144097391	144097391	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggaatatcttctctaGctcctccagctgatctgaaa	6	11	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144097391	A	A	144097391	2	1	106	1	0	0	0	0	0	0	0	1	10607	962	34	4		4	NOBOX	7	144097391	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	464321	144097391	15041272	866	103561											
TPK1	27010	broad.mit.edu	37	chr7	144344384	144344384	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcaactgtctgtctcatAgcacgaacagcaaagcgacc	9	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144344384	G	G	144344384	1	3	106	0	1	0	0	0	0	0	0	0	16528	435	15	5		5	TPK1	7	144344384	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	246993	144344384	14794279	867	103562											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259322	147259322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcagcggacctctggggCctctgaaagtttactgcaac	12	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147259322	A	A	147259322	3	1	106	1	0	0	0	0	1	0	0	0	3679	739	26	3	1916	3	CNTNAP2	7	147259322	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2914938	147259322	11879341	868	103563											
ZNF777	27153	broad.mit.edu	37	chr7	149128849	149128849	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgcacctggccgggcggCggcggcggggcgcgcgctca	20	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149128849	A	A	149128849	1	1	106	0	1	0	0	0	0	0	0	0	18279	783	27	3		3	ZNF777	7	149128849	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	1869527	149128849	10009814	869	103564											
ZNF746	155061	broad.mit.edu	37	chr7	149174740	149174740	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccaatatctggctgcccGgctgcccacgcctccacgcc	8	21	1	0	rs145793561	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149174740	C	C	149174740	2	2	106	1	0	0	0	0	0	0	0	1	18258	1103	39	4		4	ZNF746	7	149174740	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	45891	149174740	9963923	870	103565											
KRBA1	84626	broad.mit.edu	37	chr7	149431011	149431011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacgtgccgacctcaggaGtggcaccagacgggatccca	13	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149431011	T	T	149431011	3	4	106	1	0	0	0	0	1	0	0	0	8510	1029	36	3	3029	3	KRBA1	7	149431011	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	256271	149431011	9707652	871	103566											
SSPO	23145	broad.mit.edu	37	chr7	149476708	149476708	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgtagaacctggccacctGcgggctgaagcccaggacgt	14	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149476708	C	C	149476708	2	2	106	1	0	0	0	0	0	0	0	1	15307	1319	46	4		4	SSPO	7	149476708	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	45697	149476708	9661955	872	103567											
SSPO	23145	broad.mit.edu	37	chr7	149499116	149499117	+	Intron	DEL	AT	-	-													ccctctgagccccggcccccAtgcccctgcagtggactgcg					rs61047652		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149499117	-	-	149499116	6	5	106	0	1	1	0	1	0	0	0	0	15307	232	8	0		0	SSPO	7	149499116	Intron	DEL	AT	TCGA-44-2656-01A-02D-0969-08	22408	149499116	9639547	873	103568											
TMEM176A	55365	broad.mit.edu	37	chr7	150500824	150500824	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaacagtgcctgccgcatCtccagctcgagtgactggaa	10	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150500824	T	T	150500824	2	4	106	1	0	0	0	0	0	0	0	1	16215	903	32	4		4	TMEM176A	7	150500824	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1001708	150500824	8637839	874	103569											
KCNH2	3757	broad.mit.edu	37	chr7	150648497	150648497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacttgggttcctccacCgtgggctctccccgccgccc	9	20	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150648497	A	A	150648497	1	1	106	0	1	0	0	0	0	0	0	0	8102	667	23	1		1	KCNH2	7	150648497	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	147673	150648497	8490166	875	103570											
ASB10	136371	broad.mit.edu	37	chr7	150878458	150878458	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagctccacatggccaagCcgggcggccacatgcaaagg	13	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150878458	A	A	150878458	2	1	106	1	0	0	0	0	0	0	0	1	1018	726	26	3		3	ASB10	7	150878458	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	229961	150878458	8260205	876	103571											
SMARCD3	6604	broad.mit.edu	37	chr7	150939644	150939644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcagcatcaggcttcgCagggttaaaagtgttggaga	12	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150939644	A	A	150939644	3	1	106	1	0	0	0	0	1	0	0	0	14893	710	25	3	985	3	SMARCD3	7	150939644	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	61186	150939644	8199019	877	103572											
PAXIP1	22976	broad.mit.edu	37	chr7	154775016	154775016	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaacgtaaccaaagcccaCagggcacttctgtcttcaga	8	12	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154775016	A	A	154775016	2	1	106	1	0	0	0	0	0	0	0	1	11581	465	17	3		3	PAXIP1	7	154775016	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	3835372	154775016	4363647	878	103573											
NOM1	64434	broad.mit.edu	37	chr7	156747084	156747084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgtaattgtgtgctgtgGgtggttcttgtgtcgattcc	15	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156747084	T	T	156747084	1	4	106	0	1	0	0	0	0	0	0	0	10625	1247	43	2		2	NOM1	7	156747084	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1972068	156747084	2391579	879	103574											
ARHGEF10	9639	broad.mit.edu	37	chr8	1893703	1893703	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcccacatggccgtgtcCggcgtcgggatctggattgc	13	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1893703	T	T	1893703	2	4	106	1	0	0	0	0	0	0	0	1	896	639	23	4		4	ARHGEF10	8	1893703	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08		1893703	144470319	880	103575											
CSMD1	64478	broad.mit.edu	37	chr8	2966218	2966218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctatacgccgtttcgagggCtgtgttgccactgaaaactc	11	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2966218	A	A	2966218	3	1	106	1	0	0	0	0	1	0	0	0	3978	797	28	3	4141	3	CSMD1	8	2966218	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1072515	2966218	143397804	881	103576											
CSMD1	64478	broad.mit.edu	37	chr8	2967787	2967787	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaatgcagtccttcaggatCggatactcatcaggaaagcc	9	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2967787	A	A	2967787	2	1	106	1	0	0	0	0	0	0	0	1	3978	871	31	3		3	CSMD1	8	2967787	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1569	2967787	143396235	882	103577											
CSMD1	64478	broad.mit.edu	37	chr8	2976187	2976187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttgcaggagtgtcatcaCatgtgactgcttgagatgaa	11	6	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2976187	A	A	2976187	1	1	106	0	1	0	0	0	0	0	0	0	3978	493	17	3		3	CSMD1	8	2976187	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	8400	2976187	143387835	883	103578											
CSMD1	64478	broad.mit.edu	37	chr8	3216722	3216722	+	Frame_Shift_Del	DEL	G	-	-													cacacggcggcccccacccaGgcaggtaagcttggtggcac							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3216722	-	-	3216722	7	5	106	1	0	1	0	1	0	0	0	0	3978	991	35	0	7638	0	CSMD1	8	3216722	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	240535	3216722	143147300	884	103579											
MCPH1	79648	broad.mit.edu	37	chr8	6338368	6338368	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctgctgggaattgcgCgtggctgctgggttctctct	15	9	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6338368	T	T	6338368	3	4	106	1	0	0	0	0	1	0	0	0	9491	768	27	4	2157	4	MCPH1	8	6338368	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3121646	6338368	140025654	885	103580											
RP1L1	94137	broad.mit.edu	37	chr8	10469886	10469886	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactcagggctggagaagcGgggtcgcctccctcgctggc	16	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10469886	T	T	10469886	2	4	106	1	0	0	0	0	0	0	0	1	13644	1103	39	1		1	RP1L1	8	10469886	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	4131518	10469886	135894136	886	103581											
SOX7	83595	broad.mit.edu	37	chr8	10690446	10690446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggtggttatttttcaCttgaactttaatatgatctg	7	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10690446	A	A	10690446	3	1	106	1	0	0	0	0	1	0	0	0	15070	565	20	3		3	SOX7	8	10690446	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	220560	10690446	135673576	887	103582											
BLK	640	broad.mit.edu	37	chr8	11406563	11406563	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtggctggccaggtcactCgtcacaggaagagaaggcta	15	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11406563	A	A	11406563	2	1	106	1	0	0	0	0	0	0	0	1	1450	871	31	3		3	BLK	8	11406563	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	716117	11406563	134957459	888	103583											
SLC7A2	6542	broad.mit.edu	37	chr8	17396448	17396448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtaagatttattgtcaGggcctgggatactgatatag	11	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17396448	T	T	17396448	1	4	106	0	1	0	0	0	0	0	0	0	14811	1015	35	2		2	SLC7A2	8	17396448	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5989885	17396448	128967574	889	103584											
ASAH1	427	broad.mit.edu	37	chr8	17916793	17916793	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccaaagaaaaatgccagaAccaagggaatctttaatggc	10	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17916793	T	T	17916793	1	4	106	0	1	0	0	0	0	0	0	0	1010	58	2	5		5	ASAH1	8	17916793	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	520345	17916793	128447229	890	103585											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19263715	19263715	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaccacccctccaaggtacGagagtgtccacctgggtcag	10	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19263715	T	T	19263715	1	4	106	0	1	0	0	0	0	0	0	0	3972	1073	37	3		3	CSGALNACT1	8	19263715	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1346922	19263715	127100307	891	103586											
LGI3	203190	broad.mit.edu	37	chr8	22005801	22005801	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagcctgcacagccagctCctggaaccgtacaaacttct	9	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22005801	A	A	22005801	4	1	106	1	0	0	0	0	0	1	0	0	8825	864	30	3	131	3	LGI3	8	22005801	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2742086	22005801	124358221	892	103587											
RHOBTB2	23221	broad.mit.edu	37	chr8	22868122	22868122	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctacaccggcatgttcacCtccagccccgacctggatga	8	17	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22868122	T	T	22868122	2	4	106	1	0	0	0	0	0	0	0	1	13443	668	24	4		4	RHOBTB2	8	22868122	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	862321	22868122	123495900	893	103588											
ADAM28	10863	broad.mit.edu	37	chr8	24187793	24187793	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatattttttaataactAagacataatttaaacatatt	3	3	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24187793	T	T	24187793	1	4	106	0	1	0	0	0	0	0	0	0	246	377	13	5		5	ADAM28	8	24187793	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1319671	24187793	122176229	894	103589											
EBF2	64641	broad.mit.edu	37	chr8	25744284	25744284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctacctgtgtaaatgaaCcttcctggggctcctttgca	8	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25744284	G	G	25744284	3	3	106	1	0	0	0	0	1	0	0	0	4921	506	18	4	759	4	EBF2	8	25744284	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1556491	25744284	120619738	895	103590											
EPHX2	2053	broad.mit.edu	37	chr8	27379875	27379875	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaggggctggctgatggccGaacctctcagcaccccgttc	13	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27379875	T	T	27379875	1	4	106	0	1	0	0	0	0	0	0	0	5222	1073	37	3		3	EPHX2	8	27379875	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1635591	27379875	118984147	896	103591											
C8orf80	389643	broad.mit.edu	37	chr8	27888782	27888782	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggatcaggaaattttttTtgcagctatcatatttccag	7	8	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27888782	C	C	27888782	3	2	106	1	0	0	0	0	1	0	0	0	2465	1841	64	5	524	5	C8orf80	8	27888782	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	508907	27888782	118475240	897	103592											
C8orf80	389643	broad.mit.edu	37	chr8	27927077	27927077	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacatgagatacttgactcCattagggatgctgtcatcca	8	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27927077	T	T	27927077	3	4	106	1	0	0	0	0	1	0	0	0	2465	603	21	4	2213	4	C8orf80	8	27927077	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	38295	27927077	118436945	898	103593											
KIF13B	23303	broad.mit.edu	37	chr8	29048493	29048493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacaccatcagtagttgaCaggatgctggattctattac	8	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29048493	A	A	29048493	1	1	106	0	1	0	0	0	0	0	0	0	8345	493	17	3		3	KIF13B	8	29048493	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1121416	29048493	117315529	899	103594											
ZMAT4	79698	broad.mit.edu	37	chr8	40438795	40438795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagacctgtggacaacagaCagacctggttagctgcatcc	10	12	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40438795	A	A	40438795	1	1	106	0	1	0	0	0	0	0	0	0	17820	493	17	3		3	ZMAT4	8	40438795	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	11390302	40438795	105925227	900	103595											
PRKDC	5591	broad.mit.edu	37	chr8	48744518	48744518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaggcccagttactccCcgccgcccagacacttggct	9	17	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48744518	A	A	48744518	1	1	106	0	1	0	0	0	0	0	0	0	12627	638	22	2		2	PRKDC	8	48744518	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	8305723	48744518	97619504	901	103596											
PXDNL	137902	broad.mit.edu	37	chr8	52252002	52252002	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacattccatccggccgacaGaacaagactgtgtctttaaa	7	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52252002	T	T	52252002	1	4	106	0	1	0	0	0	0	0	0	0	12956	957	33	3		3	PXDNL	8	52252002	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3507484	52252002	94112020	902	103597											
ST18	9705	broad.mit.edu	37	chr8	53045888	53045888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacaggaagagagcatggGctgagaagttgtagttgggg	19	4	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53045888	T	T	53045888	1	4	106	0	1	0	0	0	0	0	0	0	15330	1218	42	3		3	ST18	8	53045888	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	793886	53045888	93318134	903	103598											
RP1	6101	broad.mit.edu	37	chr8	55538014	55538014	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcagatcaataacaatgaTcaaatggaggagtcatcatt	8	6	5	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55538014	G	G	55538014	3	3	106	1	0	0	0	0	1	0	0	0	13643	1432	50	5	1582	5	RP1	8	55538014	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	2492126	55538014	90826008	904	103599											
NKAIN3	286183	broad.mit.edu	37	chr8	63831079	63831079	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaagacacatgtaagtActgttttctctctccctgtg	8	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63831079	G	G	63831079	1	3	106	0	1	0	0	0	0	0	0	0	10532	406	14	5		5	NKAIN3	8	63831079	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	8293065	63831079	82532943	905	103600											
TRIM55	84675	broad.mit.edu	37	chr8	67064862	67064863	+	Splice_Site	DNP	GG	AT	AT													gcggatgcccctgtgacacaGgtaacccctcctgagtctct							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	67064863	AT	AT	67064862	5	1	106	1	0	0	0	0	0	0	1	0	16654	1014	35	4	1266	4	TRIM55	8	67064862	Splice_Site	DNP	GG	TCGA-44-2656-01A-02D-0969-08	3233783	67064862	79299160	906	103601											
SGK3	23678	broad.mit.edu	37	chr8	67679620	67679620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatacacaaactctaaaGcactaagaaatttaaatatc	2	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67679620	T	T	67679620	1	4	106	0	1	0	0	0	0	0	0	0	14325	986	34	3		3	SGK3	8	67679620	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	614758	67679620	78684402	907	103602											
SLCO5A1	81796	broad.mit.edu	37	chr8	70667570	70667570	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacttatctggccacagacAgtgggtagacagcatgggcc	13	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70667570	T	T	70667570	1	4	106	0	1	0	0	0	0	0	0	0	14845	203	7	5		5	SLCO5A1	8	70667570	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2987950	70667570	75696452	908	103603											
SLCO5A1	81796	broad.mit.edu	37	chr8	70706595	70706595	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacagttcatcataactgcTctcctactatttatcattgt	4	10	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70706595	A	A	70706595	1	1	106	0	1	0	0	0	0	0	0	0	14845	1566	54	5		5	SLCO5A1	8	70706595	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	39025	70706595	75657427	909	103604											
NCOA2	10499	broad.mit.edu	37	chr8	71056877	71056877	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcatttgaccccttacCtgtgctactgttccctaaat	6	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71056877	G	G	71056877	3	3	106	1	0	0	0	0	1	0	0	0	10324	695	24	4	1626	4	NCOA2	8	71056877	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	350282	71056877	75307145	910	103605											
TRAM1	23471	broad.mit.edu	37	chr8	71512306	71512306	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaacaaaaatgatagaagcTtttgccgttatctacaaaga	7	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71512306	A	A	71512306	3	1	106	1	0	0	0	0	1	0	0	0	16575	1606	56	5	1029	5	TRAM1	8	71512306	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	455429	71512306	74851716	911	103606											
MSC	9242	broad.mit.edu	37	chr8	72754932	72754932	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagtctgttggctgcggaAacttctttggtgtcagagtc	12	8	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72754932	T	T	72754932	2	4	106	1	0	0	0	0	0	0	0	1	9962	1	1	5		5	MSC	8	72754932	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	1242626	72754932	73609090	912	103607											
TRPA1	8989	broad.mit.edu	37	chr8	72965976	72965976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgggtaagcatgaggacCgcagtacataccccgtcttc	10	11	1	1	rs117464670	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72965976	A	A	72965976	1	1	106	0	1	0	0	0	0	0	0	0	16702	667	23	1		1	TRPA1	8	72965976	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	211044	72965976	73398046	913	103608											
KCNB2	9312	broad.mit.edu	37	chr8	73479952	73479952	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaggaccctggctctgcGgctttgtccagttcaaaatg	10	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73479952	T	T	73479952	1	4	106	0	1	0	0	0	0	0	0	0	8083	1131	39	1		1	KCNB2	8	73479952	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	513976	73479952	72884070	914	103609											
HNF4G	3174	broad.mit.edu	37	chr8	76456309	76456309	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattcagagttttcgtatatCtgtaagtctataaatacaat	5	5	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76456309	A	A	76456309	1	1	106	0	1	0	0	0	0	0	0	0	7321	928	32	3		3	HNF4G	8	76456309	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2976357	76456309	69907713	915	103610											
HNF4G	3174	broad.mit.edu	37	chr8	76472700	76472700	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggttcatgcagaccagatCtgtaagtttatagactactt	8	8	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76472700	A	A	76472700	2	1	106	1	0	0	0	0	0	0	0	1	7321	927	32	3		3	HNF4G	8	76472700	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	16391	76472700	69891322	916	103611											
ZFHX4	79776	broad.mit.edu	37	chr8	77690476	77690476	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagggtgcagtgaatccCgaatcctgctattactactg	10	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77690476	A	A	77690476	2	1	106	1	0	0	0	0	0	0	0	1	17761	639	23	1		1	ZFHX4	8	77690476	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1217776	77690476	68673546	917	103612											
ZFHX4	79776	broad.mit.edu	37	chr8	77766770	77766770	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccatggacatgccctacaTgatatttgaccccaacaatc	6	14	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77766770	C	C	77766770	3	2	106	1	0	0	0	0	1	0	0	0	17761	1464	51	5	7647	5	ZFHX4	8	77766770	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	76294	77766770	68597252	918	103613											
ZFHX4	79776	broad.mit.edu	37	chr8	77768616	77768616	+	Intron	DEL	C	-	-													atgtaaccaagaacggggtgCctttggatttcttttaattt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77768616	-	-	77768616	6	5	106	0	1	1	0	1	0	0	0	0	17761	754	26	0		0	ZFHX4	8	77768616	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	1846	77768616	68595406	919	103614											
ZFHX4	79776	broad.mit.edu	37	chr8	77775904	77775904	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtgcactgttgcagcaGtaccaacagtatcagcagaa	10	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77775904	C	C	77775904	3	2	106	1	0	0	0	0	1	0	0	0	17761	1020	36	4	9992	4	ZFHX4	8	77775904	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	7288	77775904	68588118	920	103615											
PEX2	5828	broad.mit.edu	37	chr8	77895335	77895335	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acataatatatttagaatcaCatggtttccagtgattagat	6	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77895335	A	A	77895335	1	1	106	0	1	0	0	0	0	0	0	0	11840	493	17	3		3	PEX2	8	77895335	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	119431	77895335	68468687	921	103616											
IL7	3574	broad.mit.edu	37	chr8	79673608	79673608	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtgtgtagatagcttgggGatatttctctaaaagtctag	12	4	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79673608	T	T	79673608	1	4	106	0	1	0	0	0	0	0	0	0	7774	1189	41	3		3	IL7	8	79673608	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1778273	79673608	66690414	922	103617											
SLC7A13	157724	broad.mit.edu	37	chr8	87235403	87235403	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcattatttttagattatTatttttgtatttgtataaat	3	1	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87235403	A	A	87235403	1	1	106	0	1	0	0	0	0	0	0	0	14809	1769	61	5		5	SLC7A13	8	87235403	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	7561795	87235403	59128619	923	103618											
CNGB3	54714	broad.mit.edu	37	chr8	87641337	87641337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatggtcactccacgccCagcagaggaaatgagttaat	9	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87641337	A	A	87641337	1	1	106	0	1	0	0	0	0	0	0	0	3633	609	21	2		2	CNGB3	8	87641337	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	405934	87641337	58722685	924	103619											
CNGB3	54714	broad.mit.edu	37	chr8	87645122	87645122	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataataacatctcagatacCtgtgaaaacagaagatatac	5	7	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87645122	A	A	87645122	5	1	106	1	0	0	0	0	0	0	1	0	3633	695	24	2	1283	2	CNGB3	8	87645122	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	3785	87645122	58718900	925	103620											
CNBD1	168975	broad.mit.edu	37	chr8	88249007	88249007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaaactatttgaaaatgcCtattacattaaattcactgt	4	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88249007	T	T	88249007	1	4	106	0	1	0	0	0	0	0	0	0	3623	696	24	4		4	CNBD1	8	88249007	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	603885	88249007	58115015	926	103621											
MMP16	4325	broad.mit.edu	37	chr8	89198859	89198859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaaaaagcaGtattttccagttatttacta	3	4	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89198859	T	T	89198859	1	4	106	0	1	0	0	0	0	0	0	0	9748	1044	36	3		3	MMP16	8	89198859	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	949852	89198859	57165163	927	103622											
SLC26A7	115111	broad.mit.edu	37	chr8	92355525	92355525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacaaattgtacctgtgGtctctaaaagtctattgtga	9	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92355525	T	T	92355525	1	4	106	0	1	0	0	0	0	0	0	0	14636	1276	44	3		3	SLC26A7	8	92355525	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3156666	92355525	54008497	928	103623											
SLC26A7	115111	broad.mit.edu	37	chr8	92407148	92407148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacctggagctttgaactgCtctactctgatgcctcataa	9	11	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92407148	A	A	92407148	1	1	106	0	1	0	0	0	0	0	0	0	14636	812	28	3		3	SLC26A7	8	92407148	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	51623	92407148	53956874	929	103624											
VPS13B	157680	broad.mit.edu	37	chr8	100779108	100779121	+	Frame_Shift_Del	DEL	TCAATCTCGTGAAT	-	-													tgaactgcagttgccggataTcaatctcgtgaatgaccaga					rs145846582		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100779121	-	-	100779108	7	5	106	1	0	1	0	1	0	0	0	0	17317	1435	50	0	7580	0	VPS13B	8	100779108	Frame_Shift_Del	DEL	TCAATCTCGTGAAT	TCGA-44-2656-01A-02D-0969-08	8371960	100779108	45584914	930	103625											
RGS22	26166	broad.mit.edu	37	chr8	101051202	101051202	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggctgaagtgtttcttggTagaaaagctgatgataagcc	12	5	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101051202	C	C	101051202	3	2	106	1	0	0	0	0	1	0	0	0	13414	1638	57	5	1727	5	RGS22	8	101051202	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	272094	101051202	45312820	931	103626											
FBXO43	286151	broad.mit.edu	37	chr8	101153252	101153255	+	Frame_Shift_Del	DEL	TCTT	-	-													atggcagaagcagctgctgcTcttttttcagagtcagggtg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101153255	-	-	101153252	7	5	106	1	0	1	0	1	0	0	0	0	5809	1548	54	0	912	0	FBXO43	8	101153252	Frame_Shift_Del	DEL	TCTT	TCGA-44-2656-01A-02D-0969-08	102050	101153252	45210770	932	103627											
RIMS2	9699	broad.mit.edu	37	chr8	104943527	104943527	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaggttggtcaccaattaAtagttacaattttgggagca	9	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104943527	G	G	104943527	3	3	106	1	0	0	0	0	1	0	0	0	13479	101	4	5	2453	5	RIMS2	8	104943527	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	3790275	104943527	41420495	933	103628											
RIMS2	9699	broad.mit.edu	37	chr8	105026852	105026852	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgttggatagaagtaagtttTatttctaattgtctcgttta	8	4	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105026852	A	A	105026852	1	1	106	0	1	0	0	0	0	0	0	0	13479	1769	61	5		5	RIMS2	8	105026852	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	83325	105026852	41337170	934	103629											
ZFPM2	23414	broad.mit.edu	37	chr8	106814424	106814424	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacgaaacatacatggtccAcaaacagtattactgtgcta	7	10	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106814424	G	G	106814424	3	3	106	1	0	0	0	0	1	0	0	0	17784	159	6	5	2144	5	ZFPM2	8	106814424	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1787572	106814424	39549598	935	103630											
OXR1	55074	broad.mit.edu	37	chr8	107751967	107751970	+	Intron	DEL	TTAA	-	-													gcaaaacatagcaactagtgTtaattaagatgttaggagat					rs34123736		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107751970	-	-	107751967	6	5	106	0	1	1	0	1	0	0	0	0	11428	1740	60	0		0	OXR1	8	107751967	Intron	DEL	TTAA	TCGA-44-2656-01A-02D-0969-08	937543	107751967	38612055	936	103631											
RSPO2	340419	broad.mit.edu	37	chr8	109001368	109001368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccatactggcgcatccCttctcttcgaaggaagaaga	8	13	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109001368	A	A	109001368	3	1	106	1	0	0	0	0	1	0	0	0	13821	681	24	2	548	2	RSPO2	8	109001368	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1249401	109001368	37362654	937	103632											
PKHD1L1	93035	broad.mit.edu	37	chr8	110478928	110478928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcttcagtcagctttcaCcgtttagcgttcaaccagcc	8	13	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110478928	A	A	110478928	3	1	106	1	0	0	0	0	1	0	0	0	12067	506	18	3	8733	3	PKHD1L1	8	110478928	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1477560	110478928	35885094	938	103633											
CSMD3	114788	broad.mit.edu	37	chr8	113246706	113246706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctggcttttatataccCctgtaaaatgcaaggacatt	6	10	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113246706	A	A	113246706	3	1	106	1	0	0	0	0	1	0	0	0	3980	637	22	2	511	2	CSMD3	8	113246706	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2767778	113246706	33117316	939	103634											
CSMD3	114788	broad.mit.edu	37	chr8	113313973	113313973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagatgcctcttttcaaGggtgaggggcagggggaagt	17	5	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113313973	T	T	113313973	1	4	106	0	1	0	0	0	0	0	0	0	3980	1015	35	2		2	CSMD3	8	113313973	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	67267	113313973	33050049	940	103635											
CSMD3	114788	broad.mit.edu	37	chr8	113569119	113569119	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctaccagcaaagtggccTtggtcactgatcttgtatcc	10	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113569119	A	A	113569119	3	1	106	1	0	0	0	0	1	0	0	0	3980	1606	56	5	7204	5	CSMD3	8	113569119	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	255146	113569119	32794903	941	103636											
CSMD3	114788	broad.mit.edu	37	chr8	113668510	113668510	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaagatccaagcaagggTgacagaagatttggcccatc	11	8	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113668510	A	A	113668510	2	1	106	1	0	0	0	0	0	0	0	1	3980	1683	59	5		5	CSMD3	8	113668510	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	99391	113668510	32695512	942	103637											
CSMD3	114788	broad.mit.edu	37	chr8	113988292	113988292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtaacatctgcaggtgtGctagcaacagcaatagcacc	9	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113988292	T	T	113988292	3	4	106	1	0	0	0	0	1	0	0	0	3980	1310	46	3	10267	3	CSMD3	8	113988292	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	319782	113988292	32375730	943	103638											
COL14A1	7373	broad.mit.edu	37	chr8	121322173	121322173	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataataatgagttaattcatActattaaggaaaatgaatga	6	2	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121322173	G	G	121322173	1	3	106	0	1	0	0	0	0	0	0	0	3703	406	14	5		5	COL14A1	8	121322173	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	7333881	121322173	25041849	944	103639											
MTBP	27085	broad.mit.edu	37	chr8	121457874	121457874	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaacggcttgtggagagggGaagaagtttgagttttgtga	18	2	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121457874	T	T	121457874	1	4	106	0	1	0	0	0	0	0	0	0	10006	1189	41	3		3	MTBP	8	121457874	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	135701	121457874	24906148	945	103640											
HAS2	3037	broad.mit.edu	37	chr8	122626343	122626343	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactgcaaacgtcaaaacatGgaagatcatacatcaagcac	7	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122626343	C	C	122626343	1	2	106	0	1	0	0	0	0	0	0	0	7028	1363	47	4		4	HAS2	8	122626343	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	1168469	122626343	23737679	946	103641											
WDYHV1	55093	broad.mit.edu	37	chr8	124449458	124449458	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttttctgcaggaaatttaGagtgatccgtgcagattcat	9	6	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124449458	T	T	124449458	3	4	106	1	0	0	0	0	1	0	0	0	17470	942	33	3	410	3	WDYHV1	8	124449458	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1823115	124449458	21914564	947	103642											
ANXA13	312	broad.mit.edu	37	chr8	124706029	124706029	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgattagcctagaaaaaTtgacacattgttattaactt	6	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124706029	C	C	124706029	1	2	106	0	1	0	0	0	0	0	0	0	717	1508	52	5		5	ANXA13	8	124706029	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	256571	124706029	21657993	948	103643											
FER1L6	654463	broad.mit.edu	37	chr8	125109470	125109470	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caattacccatgtcccctagCcccctcccaaagctaaagaa	4	17	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125109470	T	T	125109470	1	4	106	0	1	0	0	0	0	0	0	0	5872	754	26	4		4	FER1L6	8	125109470	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	403441	125109470	21254552	949	103644											
FER1L6	654463	broad.mit.edu	37	chr8	125110055	125110055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtgaccatctggaacaCtgaagatgtcattttagagg	12	6	2	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125110055	A	A	125110055	3	1	106	1	0	0	0	0	1	0	0	0	5872	565	20	3	4956	3	FER1L6	8	125110055	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	585	125110055	21253967	950	103645											
FER1L6	654463	broad.mit.edu	37	chr8	125113598	125113598	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtaagccagtggcttcatCaagcacatattaatgttaag	10	7	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125113598	A	A	125113598	1	1	106	0	1	0	0	0	0	0	0	0	5872	841	29	3		3	FER1L6	8	125113598	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3543	125113598	21250424	951	103646											
ADCY8	114	broad.mit.edu	37	chr8	131797656	131797656	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtgacaggcctgacacGgccatgtaggtgctgccaat	13	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131797656	T	T	131797656	2	4	106	1	0	0	0	0	0	0	0	1	300	1103	39	1		1	ADCY8	8	131797656	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	6684058	131797656	14566366	952	103647											
KCNQ3	3786	broad.mit.edu	37	chr8	133152309	133152309	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacaggcacaggtgggacCgtgggggcattacctgacgg	16	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133152309	G	G	133152309	1	3	106	0	1	0	0	0	0	0	0	0	8154	667	23	4		4	KCNQ3	8	133152309	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1354653	133152309	13211713	953	103648											
TMEM71	137835	broad.mit.edu	37	chr8	133723277	133723277	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataattcatccccatgcacAggaaatgcagtatctaatca	5	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133723277	T	T	133723277	1	4	106	0	1	0	0	0	0	0	0	0	16323	203	7	5		5	TMEM71	8	133723277	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	570968	133723277	12640745	954	103649											
TG	7038	broad.mit.edu	37	chr8	133923802	133923802	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttctgtggtagtaccTagaataagctatgcagcctc	9	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133923802	C	C	133923802	1	2	106	0	1	0	0	0	0	0	0	0	15936	1537	53	5		5	TG	8	133923802	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	200525	133923802	12440220	955	103650											
TG	7038	broad.mit.edu	37	chr8	134125713	134125713	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagcaaaacagccttttaCcaggcactgcagaattctct	7	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134125713	A	A	134125713	4	1	106	1	0	0	0	0	0	1	0	0	15936	518	18	3	7794	3	TG	8	134125713	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	201911	134125713	12238309	956	103651											
FAM135B	51059	broad.mit.edu	37	chr8	139161032	139161032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagcacccacaagcaaaGtgcctgctgagtggcaaagc	12	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139161032	A	A	139161032	1	1	106	0	1	0	0	0	0	0	0	0	5495	1044	36	4		4	FAM135B	8	139161032	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5035319	139161032	7202990	957	103652											
FAM135B	51059	broad.mit.edu	37	chr8	139189684	139189684	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagaataaaacaatgtaAacagttcaattctttaggta	6	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139189684	G	G	139189684	1	3	106	0	1	0	0	0	0	0	0	0	5495	29	1	5		5	FAM135B	8	139189684	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	28652	139189684	7174338	958	103653											
FAM135B	51059	broad.mit.edu	37	chr8	139207467	139207467	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttgcaaaactactgccaTtcattcagaccccagcgcca	6	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139207467	A	A	139207467	1	1	106	0	1	0	0	0	0	0	0	0	5495	1508	52	5		5	FAM135B	8	139207467	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	17783	139207467	7156555	959	103654											
FAM135B	51059	broad.mit.edu	37	chr8	139209901	139209901	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcagttctcagaggtgatGtagaagcttccctaaggggt	13	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139209901	A	A	139209901	2	1	106	1	0	0	0	0	0	0	0	1	5495	1372	48	4		4	FAM135B	8	139209901	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	2434	139209901	7154121	960	103655											
COL22A1	169044	broad.mit.edu	37	chr8	139629313	139629313	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccccgctcattctttaCcatttgcaggatactgagcc	7	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139629313	G	G	139629313	1	3	106	0	1	0	0	0	0	0	0	0	3713	522	18	4		4	COL22A1	8	139629313	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	419412	139629313	6734709	961	103656											
COL22A1	169044	broad.mit.edu	37	chr8	139643072	139643072	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgctttgaatacaaagcAattgatatggttggttatct	8	6	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139643072	T	T	139643072	1	4	106	0	1	0	0	0	0	0	0	0	3713	145	5	5		5	COL22A1	8	139643072	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	13759	139643072	6720950	962	103657											
COL22A1	169044	broad.mit.edu	37	chr8	139824060	139824060	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctctccagctgggcaGgagcagttgatggtcttcaa	11	11	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139824060	T	T	139824060	2	4	106	1	0	0	0	0	0	0	0	1	3713	987	35	2		2	COL22A1	8	139824060	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	180988	139824060	6539962	963	103658											
FLJ43860	389690	broad.mit.edu	37	chr8	142506699	142506699	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagcattgacttccatcggGctcagctgcatccttccatg	9	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142506699	C	C	142506699	1	2	106	0	1	0	0	0	0	0	0	0	5987	1218	42	4		4	FLJ43860	8	142506699	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2682639	142506699	3857323	964	103659											
BAI1	575	broad.mit.edu	37	chr8	143603577	143603577	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccatcccctgtggacccCtggggcctcagttgctgctt	10	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143603577	T	T	143603577	1	4	106	0	1	0	0	0	0	0	0	0	1303	696	24	4		4	BAI1	8	143603577	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1096878	143603577	2760445	965	103660											
JRK	8629	broad.mit.edu	37	chr8	143746065	143746065	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctccgccgtcctggtcagCttttggagtcttttctgaac	9	13	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143746065	G	G	143746065	3	3	106	1	0	0	0	0	1	0	0	0	8034	796	28	4	393	4	JRK	8	143746065	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	142488	143746065	2617957	966	103661											
CYP11B1	1584	broad.mit.edu	37	chr8	143958386	143958386	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttcagtcccccatccccGtccctggccactccagggtc	7	22	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143958386	A	A	143958386	1	1	106	0	1	0	0	0	0	0	0	0	4178	1160	40	4		4	CYP11B1	8	143958386	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	212321	143958386	2405636	967	103662											
CYP11B1	1584	broad.mit.edu	37	chr8	143959055	143959055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggagagcccctggctgcCctctcctccccgcccttccc	10	21	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143959055	A	A	143959055	1	1	106	0	1	0	0	0	0	0	0	0	4178	638	22	2		2	CYP11B1	8	143959055	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	669	143959055	2404967	968	103663											
PLEC	5339	broad.mit.edu	37	chr8	144992681	144992681	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtaggggtcacggtagcCggtgaccgcccgctcagccg	17	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144992681	T	T	144992681	3	4	106	1	0	0	0	0	1	0	0	0	12147	652	23	4	2339	4	PLEC	8	144992681	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1033626	144992681	1371341	969	103664											
PLEC	5339	broad.mit.edu	37	chr8	145007615	145007615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcagccgcttcctcagCctcagtgggccactgcctcc	8	20	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145007615	A	A	145007615	1	1	106	0	1	0	0	0	0	0	0	0	12147	754	26	3		3	PLEC	8	145007615	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	14934	145007615	1356407	970	103665											
PLEC	5339	broad.mit.edu	37	chr8	145049201	145049201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtgccgcctgcactcaCctgggacgcgcgaggccctc	13	18	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145049201	A	A	145049201	1	1	106	0	1	0	0	0	0	0	0	0	12147	522	18	3		3	PLEC	8	145049201	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	41586	145049201	1314821	971	103666											
HEATR7A	727957	broad.mit.edu	37	chr8	145245886	145245886	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctgatgccagggctctctCctccccacattccctgcccg	8	20	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145245886	A	A	145245886	1	1	106	0	1	0	0	0	0	0	0	0	7101	870	30	3		3	HEATR7A	8	145245886	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	196685	145245886	1118136	972	103667											
DOCK8	81704	broad.mit.edu	37	chr9	304775	304775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcatgctgtcagttttaCaaactagaataaacgataga	9	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	304775	A	A	304775	1	1	106	0	1	0	0	0	0	0	0	0	4733	493	17	3		3	DOCK8	9	304775	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08		304775	140908656	973	103668											
SMARCA2	6595	broad.mit.edu	37	chr9	2191192	2191192	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgttgtctgtaggttggtGatagtcttaccacctataca	10	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2191192	T	T	2191192	1	4	106	0	1	0	0	0	0	0	0	0	14883	1305	45	3		3	SMARCA2	9	2191192	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1886417	2191192	139022239	974	103669											
KIAA0020	9933	broad.mit.edu	37	chr9	2820099	2820099	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaatgggagtattggccCtgcaagaattggaagccagc	12	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2820099	A	A	2820099	5	1	106	1	0	0	0	0	0	0	1	0	8222	695	24	2	782	2	KIAA0020	9	2820099	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	628907	2820099	138393332	975	103670											
C9orf68	55064	broad.mit.edu	37	chr9	4635423	4635423	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaaatagaaaaagcaTaaatatctgtatttacacct	5	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4635423	C	C	4635423	1	2	106	0	1	0	0	0	0	0	0	0	2517	1421	49	5		5	C9orf68	9	4635423	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1815324	4635423	136578008	976	103671											
JAK2	3717	broad.mit.edu	37	chr9	5126875	5126875	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtggactattattacatAtatcattattatataaatca	4	5	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5126875	T	T	5126875	1	4	106	0	1	0	0	0	0	0	0	0	8008	464	16	5		5	JAK2	9	5126875	3'UTR	SNP	A	TCGA-44-2656-01A-02D-0969-08	491452	5126875	136086556	977	103672											
CD274	29126	broad.mit.edu	37	chr9	5465463	5465463	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccatcaaaattttatctTtagtcagtttgttttcgttt	4	7	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5465463	C	C	5465463	1	2	106	0	1	0	0	0	0	0	0	0	3021	1856	64	5		5	CD274	9	5465463	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	338588	5465463	135747968	978	103673											
GLDC	2731	broad.mit.edu	37	chr9	6534776	6534776	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgtaacgcaggtcagggAgtgtggagacatctgagaca	15	6	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6534776	G	G	6534776	3	3	106	1	0	0	0	0	1	0	0	0	6497	304	11	5	219	5	GLDC	9	6534776	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1069313	6534776	134678655	979	103674											
GLDC	2731	broad.mit.edu	37	chr9	6589151	6589151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcctaactccctagctgAttaccaaagcacaaaacgca	5	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6589151	G	G	6589151	1	3	106	0	1	0	0	0	0	0	0	0	6497	348	12	5		5	GLDC	9	6589151	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	54375	6589151	134624280	980	103675											
PTPRD	5789	broad.mit.edu	37	chr9	8376746	8376746	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctacaagaaacaagtgacaCattcagggcaaatgctcatc	7	11	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8376746	G	G	8376746	1	3	106	0	1	0	0	0	0	0	0	0	12907	493	17	4		4	PTPRD	9	8376746	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1787595	8376746	132836685	981	103676											
PTPRD	5789	broad.mit.edu	37	chr9	8460541	8460541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatccattgacaccacggGgtcggagtaagggctggttg	15	9	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8460541	T	T	8460541	3	4	106	1	0	0	0	0	1	0	0	0	12907	1232	43	2	2114	2	PTPRD	9	8460541	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	83795	8460541	132752890	982	103677											
PTPRD	5789	broad.mit.edu	37	chr9	8484043	8484043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtatcttcttttacgacCtctataattttgagatataa	5	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8484043	A	A	8484043	1	1	106	0	1	0	0	0	0	0	0	0	12907	696	24	2		2	PTPRD	9	8484043	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	23502	8484043	132729388	983	103678											
MPDZ	8777	broad.mit.edu	37	chr9	13125097	13125097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctcaccatagggctccCtgactacaaccttccaaaca	5	17	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13125097	A	A	13125097	1	1	106	0	1	0	0	0	0	0	0	0	9816	696	24	2		2	MPDZ	9	13125097	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4641054	13125097	128088334	984	103679											
CER1	9350	broad.mit.edu	37	chr9	14722769	14722769	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatcgtatatatagatacCtgcctggcgggatgggaagg	14	6	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14722769	T	T	14722769	1	4	106	0	1	0	0	0	0	0	0	0	3295	696	24	4		4	CER1	9	14722769	5'Flank	SNP	C	TCGA-44-2656-01A-02D-0969-08	1597672	14722769	126490662	985	103680											
FREM1	158326	broad.mit.edu	37	chr9	14784421	14784421	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtgtacatagcaaactgtCtgccccactacatccatttg	6	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14784421	A	A	14784421	3	1	106	1	0	0	0	0	1	0	0	0	6104	912	32	3	2256	3	FREM1	9	14784421	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	61652	14784421	126429010	986	103681											
TTC39B	158219	broad.mit.edu	37	chr9	15225903	15225903	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccccaggaatgcccacaAcccttcctgacctgctgaca	6	18	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15225903	G	G	15225903	1	3	106	0	1	0	0	0	0	0	0	0	16834	58	2	5		5	TTC39B	9	15225903	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	441482	15225903	125987528	987	103682											
C9orf93	203238	broad.mit.edu	37	chr9	15745522	15745522	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caattttatagaacatcaaaAggagcagttgcgttgtttac	8	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15745522	C	C	15745522	3	2	106	1	0	0	0	0	1	0	0	0	2532	72	3	5	2630	5	C9orf93	9	15745522	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	519619	15745522	125467909	988	103683											
IFNA2	3440	broad.mit.edu	37	chr9	21384955	21384955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtctctgtcacccccaccCcctgtatcacacaggcttcc	6	19	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21384955	A	A	21384955	3	1	106	1	0	0	0	0	1	0	0	0	7607	623	22	2	196	2	IFNA2	9	21384955	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	5639433	21384955	119828476	989	103684											
IFT74	80173	broad.mit.edu	37	chr9	27011886	27011886	+	Intron	DEL	T	-	-													taatttggatttatgtttgcTtttttttttccacttaggaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27011886	-	-	27011886	6	5	106	0	1	1	0	1	0	0	0	0	7633	1624	56	0		0	IFT74	9	27011886	Intron	DEL	T	TCGA-44-2656-01A-02D-0969-08	5626931	27011886	114201545	990	103685											
C9orf72	203228	broad.mit.edu	37	chr9	27556699	27556699	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttcatgacagggtggcatCtgcttcacagtattgacatc	10	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27556699	T	T	27556699	2	4	106	1	0	0	0	0	0	0	0	1	2521	912	32	4		4	C9orf72	9	27556699	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	544813	27556699	113656732	991	103686											
TOPORS	10210	broad.mit.edu	37	chr9	32544246	32544246	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagatgcatcagctggtaCtgtctgttgcaatttgctag	12	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32544246	G	G	32544246	3	3	106	1	0	0	0	0	1	0	0	0	16494	565	20	4	2864	4	TOPORS	9	32544246	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4987547	32544246	108669185	992	103687											
TAF1L	138474	broad.mit.edu	37	chr9	32633786	32633787	+	Missense_Mutation	DNP	CC	AA	AA													tccaaaggtgccccgaagacCctgttgcttggggaaataat							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32633787	AA	AA	32633786	3	1	106	1	0	0	0	0	1	0	0	0	15642	623	22	2	3692	2	TAF1L	9	32633786	Missense_Mutation	DNP	CC	TCGA-44-2656-01A-02D-0969-08	89540	32633786	108579645	993	103688											
APTX	54840	broad.mit.edu	37	chr9	33019875	33019875	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccctttggtggggttcgGcatctggagccagggaccca	14	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33019875	A	A	33019875	1	1	106	0	1	0	0	0	0	0	0	0	822	1218	42	4		4	APTX	9	33019875	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	386089	33019875	108193556	994	103689											
SMU1	55234	broad.mit.edu	37	chr9	33052933	33052933	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaacatccaggggaaaggaGatcacttttgaaataccaaa	8	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33052933	A	A	33052933	1	1	106	0	1	0	0	0	0	0	0	0	14931	957	33	4		4	SMU1	9	33052933	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	33058	33052933	108160498	995	103690											
PRSS3	5646	broad.mit.edu	37	chr9	33786548	33786548	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgtgttcagtgctgtcatCtctcaaaagccaagcaggga	10	10	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33786548	A	A	33786548	1	1	106	0	1	0	0	0	0	0	0	0	12728	928	32	3		3	PRSS3	9	33786548	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	733615	33786548	107426883	996	103691											
C9orf131	138724	broad.mit.edu	37	chr9	35045842	35045842	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctggataaccatcgaccCctacccaccaaatctagtca	5	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35045842	A	A	35045842	2	1	106	1	0	0	0	0	0	0	0	1	2483	610	22	2		2	C9orf131	9	35045842	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1259294	35045842	106167589	997	103692											
IGFBPL1	347252	broad.mit.edu	37	chr9	38414155	38414155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacaggcccacctgcgccCcggtgacgttgtgaacactt	12	14	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38414155	A	A	38414155	3	1	106	1	0	0	0	0	1	0	0	0	7655	623	22	2	342	2	IGFBPL1	9	38414155	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3368313	38414155	102799276	998	103693											
FAM75A3	727830	broad.mit.edu	37	chr9	40702834	40702834	+	Missense_Mutation	SNP	A	C	C													tcaagccaagcatcctcaggAtctggcctccaccccatcac							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40702834	C	C	40702834	3	2	106	1	0	0	0	0	1	0	0	0	5672	333	12	5	505	5	FAM75A3	9	40702834	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	2288679	40702834	100510597	999	103694	454	2									
FAM75A3	727830	broad.mit.edu	37	chr9	40702836	40702836	+	Silent	SNP	C	T	T													aagccaagcatcctcaggatCtggcctccaccccatcacca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40702836	T	T	40702836	2	4	106	1	0	0	0	0	0	0	0	1	5672	912	32	4		4	FAM75A3	9	40702836	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2	40702836	100510595	1000	103695	454	2									
APBA1	320	broad.mit.edu	37	chr9	72047361	72047361	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaactcagggagctttccTggaaggtctgctcagggcca	14	10	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72047361	C	C	72047361	1	2	106	0	1	0	0	0	0	0	0	0	758	1595	55	5		5	APBA1	9	72047361	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	31344525	72047361	69166070	1001	103696											
TRPM3	80036	broad.mit.edu	37	chr9	73478167	73478167	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaattccaccatgtggctAtatcaggtattggtaaactc	8	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73478167	T	T	73478167	1	4	106	0	1	0	0	0	0	0	0	0	16712	464	16	5		5	TRPM3	9	73478167	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1430806	73478167	67735264	1002	103697											
TRPM3	80036	broad.mit.edu	37	chr9	73531919	73531919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggaggagttagaagtcCtgggacaaacaaggtgagtg	16	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73531919	A	A	73531919	1	1	106	0	1	0	0	0	0	0	0	0	16712	696	24	2		2	TRPM3	9	73531919	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	53752	73531919	67681512	1003	103698											
TMC1	117531	broad.mit.edu	37	chr9	75403108	75403108	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaaatttaaaaagaaacTattttctggtcattagaaca	4	4	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75403108	C	C	75403108	1	2	106	0	1	0	0	0	0	0	0	0	16107	1537	53	5		5	TMC1	9	75403108	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1871189	75403108	65810323	1004	103699											
TRPM6	140803	broad.mit.edu	37	chr9	77363000	77363000	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgttttggtcaacaacagAcagcatatattacaatggtc	8	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77363000	G	G	77363000	1	3	106	0	1	0	0	0	0	0	0	0	16715	290	10	5		5	TRPM6	9	77363000	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1959892	77363000	63850431	1005	103700											
OSTF1	26578	broad.mit.edu	37	chr9	77749227	77749227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcaggcttctaattttcGttcttaaaaggtatcttttc	6	7	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77749227	T	T	77749227	1	4	106	0	1	0	0	0	0	0	0	0	11391	1160	40	3		3	OSTF1	9	77749227	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	386227	77749227	63464204	1006	103701											
PRUNE2	158471	broad.mit.edu	37	chr9	79468996	79468996	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataataattcaaaatataagGagtattacccttttttccct	3	7	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79468996	T	T	79468996	1	4	106	0	1	0	0	0	0	0	0	0	12747	1189	41	3		3	PRUNE2	9	79468996	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1719769	79468996	61744435	1007	103702											
GNAQ	2776	broad.mit.edu	37	chr9	80537207	80537207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcagagtatcctgacCcatggatgattctcatctgc	7	12	4	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80537207	A	A	80537207	3	1	106	1	0	0	0	0	1	0	0	0	6573	623	22	2	912	2	GNAQ	9	80537207	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1068211	80537207	60676224	1008	103703											
TLE4	7091	broad.mit.edu	37	chr9	82322996	82322996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtcattgttaaaaccatGttctaattgctggtatatgt	7	6	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82322996	T	T	82322996	1	4	106	0	1	0	0	0	0	0	0	0	16064	1392	48	3		3	TLE4	9	82322996	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1785789	82322996	58890435	1009	103704											
KIF27	55582	broad.mit.edu	37	chr9	86506225	86506225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaccttcctggaatcttgTcttgatgggatataaatata	7	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86506225	A	A	86506225	3	1	106	1	0	0	0	0	1	0	0	0	8366	1664	58	5	2463	5	KIF27	9	86506225	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	4183229	86506225	54707206	1010	103705											
C9orf64	84267	broad.mit.edu	37	chr9	86570403	86570403	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagttgagaaaagagcctcCaaacttctccagcagaattt	8	10	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86570403	A	A	86570403	4	1	106	1	0	0	0	0	0	1	0	0	2515	603	21	2	547	2	C9orf64	9	86570403	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	64178	86570403	54643028	1011	103706											
NFIL3	4783	broad.mit.edu	37	chr9	94172835	94172835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaattcccgtttcctcCgacatgcagaagatttgttc	8	10	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94172835	A	A	94172835	3	1	106	1	0	0	0	0	1	0	0	0	10468	652	23	1	1210	1	NFIL3	9	94172835	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	7602432	94172835	47040596	1012	103707											
ROR2	4920	broad.mit.edu	37	chr9	94486955	94486955	+	Frame_Shift_Del	DEL	G	-	-													ttgtgaaccacgtggtggctGgataggtactccatccccgc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94486955	-	-	94486955	7	5	106	1	0	1	0	1	0	0	0	0	13638	1335	47	0	1014	0	ROR2	9	94486955	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	314120	94486955	46726476	1013	103708											
OGN	4969	broad.mit.edu	37	chr9	95165620	95165621	+	Missense_Mutation	DNP	GG	TT	TT													gataatgcgtgagtcctgctGggttggtggtgctggcttta							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	95165621	TT	TT	95165620	3	4	106	1	0	0	0	0	1	0	0	0	10941	1357	47	2	850	2	OGN	9	95165620	Missense_Mutation	DNP	GG	TCGA-44-2656-01A-02D-0969-08	678665	95165620	46047811	1014	103709											
WNK2	65268	broad.mit.edu	37	chr9	96062329	96062329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccctttatattcatttGcaggctggacggtttaccac	7	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96062329	T	T	96062329	1	4	106	0	1	0	0	0	0	0	0	0	17505	1334	46	3		3	WNK2	9	96062329	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	896709	96062329	45151102	1015	103710											
FAM120A	23196	broad.mit.edu	37	chr9	96320839	96320839	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcccttacacttctcccctCtctctctaccccgggtccca	4	21	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96320839	T	T	96320839	1	4	106	0	1	0	0	0	0	0	0	0	5461	928	32	4		4	FAM120A	9	96320839	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	258510	96320839	44892592	1016	103711											
HEMGN	55363	broad.mit.edu	37	chr9	100693342	100693342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatactttggttatgctcCcaggtggctcagtttttttc	9	8	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100693342	A	A	100693342	3	1	106	1	0	0	0	0	1	0	0	0	7117	623	22	2	1127	2	HEMGN	9	100693342	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4372503	100693342	40520089	1017	103712											
COL15A1	1306	broad.mit.edu	37	chr9	101806779	101806779	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggtggcaaggaggagtctCtgtacaaaactctctggaca	12	8	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101806779	A	A	101806779	1	1	106	0	1	0	0	0	0	0	0	0	3704	928	32	3		3	COL15A1	9	101806779	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1113437	101806779	39406652	1018	103713											
COL15A1	1306	broad.mit.edu	37	chr9	101817383	101817383	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgaagcatttctttttcaGgtcctccacttgatctagct	6	11	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101817383	T	T	101817383	5	4	106	1	0	0	0	0	0	0	1	0	3704	1014	35	2	3161	2	COL15A1	9	101817383	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	10604	101817383	39396048	1019	103714											
COL15A1	1306	broad.mit.edu	37	chr9	101824747	101824747	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgggtgctaacaggaggtTcccacagtagagcggaggaa	15	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101824747	A	A	101824747	1	1	106	0	1	0	0	0	0	0	0	0	3704	1798	62	5		5	COL15A1	9	101824747	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	7364	101824747	39388684	1020	103715											
PPP3R2	5535	broad.mit.edu	37	chr9	104356802	104356802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggatgatgatggttttGtcgaccagctgctggagctg	14	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104356802	T	T	104356802	3	4	106	1	0	0	0	0	1	0	0	0	12502	1368	48	3	114	3	PPP3R2	9	104356802	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2532055	104356802	36856629	1021	103716											
OR13C4	138804	broad.mit.edu	37	chr9	107288712	107288712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgggacttaggttttGcatacataaagaagatggta	12	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107288712	T	T	107288712	3	4	106	1	0	0	0	0	1	0	0	0	11030	1319	46	3	179	3	OR13C4	9	107288712	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2931910	107288712	33924719	1022	103717											
OR13C4	138804	broad.mit.edu	37	chr9	107289148	107289148	+	Frame_Shift_Del	DEL	G	-	-													atcaaatgccatcatgccaaGgaggaaacattctgttgacc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107289148	-	-	107289148	7	5	106	1	0	1	0	1	0	0	0	0	11030	1000	35	0	615	0	OR13C4	9	107289148	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	436	107289148	33924283	1023	103718											
OR13C5	138799	broad.mit.edu	37	chr9	107361248	107361248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaattgacagctcctatgatCcaggacccagctgccatggg	11	12	0	2	rs141723124	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107361248	A	A	107361248	3	1	106	1	0	0	0	0	1	0	0	0	11031	856	30	3	511	3	OR13C5	9	107361248	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	72100	107361248	33852183	1024	103719											
OR13C2	392376	broad.mit.edu	37	chr9	107367610	107367610	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccaagccgaggaacatcTgcactgcacagccagaaagg	12	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107367610	A	A	107367610	3	1	106	1	0	0	0	0	1	0	0	0	11028	1580	55	5	660	5	OR13C2	9	107367610	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	6362	107367610	33845821	1025	103720											
SLC44A1	23446	broad.mit.edu	37	chr9	108136969	108136969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggagaatgctttgcgaGtggctaccatcaacacagta	12	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108136969	T	T	108136969	3	4	106	1	0	0	0	0	1	0	0	0	14749	1029	36	3	1635	3	SLC44A1	9	108136969	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	769359	108136969	33076462	1026	103721											
RAD23B	5887	broad.mit.edu	37	chr9	110086366	110086366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaaaagtccatgaacgGtccttcccctcctcaaatac	5	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110086366	T	T	110086366	1	4	106	0	1	0	0	0	0	0	0	0	13091	1276	44	3		3	RAD23B	9	110086366	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1949397	110086366	31127065	1027	103722											
IKBKAP	8518	broad.mit.edu	37	chr9	111673503	111673503	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggattagacctagggatattCaatttgtaagataagccatc	9	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111673503	A	A	111673503	1	1	106	0	1	0	0	0	0	0	0	0	7680	841	29	3		3	IKBKAP	9	111673503	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1587137	111673503	29539928	1028	103723											
MUSK	4593	broad.mit.edu	37	chr9	113563158	113563158	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccccgtggagctgtacaatCtcatgcgtctatgttggagc	12	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113563158	A	A	113563158	3	1	106	1	0	0	0	0	1	0	0	0	10083	913	32	3	2590	3	MUSK	9	113563158	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1889655	113563158	27650273	1029	103724											
C9orf84	158401	broad.mit.edu	37	chr9	114467664	114467664	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaaataagagaaaatttaTaaatatttctcttttattct	2	5	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114467664	C	C	114467664	1	2	106	0	1	0	0	0	0	0	0	0	2526	1421	49	5		5	C9orf84	9	114467664	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	904506	114467664	26745767	1030	103725											
C9orf84	158401	broad.mit.edu	37	chr9	114538232	114538232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaattcacaattaatctggGtcaccattcttgtaattgtt	5	8	4	0	rs56921768		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114538232	T	T	114538232	3	4	106	1	0	0	0	0	1	0	0	0	2526	1261	44	3	4478	3	C9orf84	9	114538232	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	70568	114538232	26675199	1031	103726											
COL27A1	85301	broad.mit.edu	37	chr9	117027389	117027389	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggctcgagaggctttcCtgtaagtagcaccagttctt	11	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117027389	T	T	117027389	3	4	106	1	0	0	0	0	1	0	0	0	3717	695	24	4	3460	4	COL27A1	9	117027389	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2489157	117027389	24186042	1032	103727											
DFNB31	25861	broad.mit.edu	37	chr9	117166348	117166348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccgagaggtgggagagcGtagaggctgctggagagggg	22	5	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117166348	T	T	117166348	3	4	106	1	0	0	0	0	1	0	0	0	4495	1145	40	3	489	3	DFNB31	9	117166348	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	138959	117166348	24047083	1033	103728											
DFNB31	25861	broad.mit.edu	37	chr9	117228833	117228833	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccctagaacattccagttCctgccccagctctgcctctg	6	17	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117228833	A	A	117228833	1	1	106	0	1	0	0	0	0	0	0	0	4495	870	30	3		3	DFNB31	9	117228833	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	62485	117228833	23984598	1034	103729											
TNC	3371	broad.mit.edu	37	chr9	117826978	117826978	+	Nonsense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatagccctggatcaccccAtagatggagactgtataagg	10	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117826978	C	C	117826978	4	2	106	1	0	0	0	0	0	1	0	0	16393	224	8	5	3242	5	TNC	9	117826978	Nonsense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	598145	117826978	23386453	1035	103730											
DBC1	1620	broad.mit.edu	37	chr9	122075634	122075634	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacaaacctccagttcatGcttttctgccggcctttttc	5	14	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122075634	T	T	122075634	1	4	106	0	1	0	0	0	0	0	0	0	4280	1334	46	3		3	DBC1	9	122075634	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	4248656	122075634	19137797	1036	103731											
C5	727	broad.mit.edu	37	chr9	123725388	123725388	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttcctcttcttgaaaaagTctgaacacattagcatataa	5	8	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123725388	A	A	123725388	1	1	106	0	1	0	0	0	0	0	0	0	2303	1682	58	5		5	C5	9	123725388	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1649754	123725388	17488043	1037	103732											
TTLL11	158135	broad.mit.edu	37	chr9	124751501	124751501	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgtggggcccggcctcccCgtggggatgtctgactggta	16	13	1	1	rs144762491		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124751501	G	G	124751501	2	3	106	1	0	0	0	0	0	0	0	1	16850	639	23	4		4	TTLL11	9	124751501	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1026113	124751501	16461930	1038	103733											
PTGS1	5742	broad.mit.edu	37	chr9	125149046	125149046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgctggtgagggcaggtgGgctgagggatccagcagacc	19	8	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125149046	A	A	125149046	1	1	106	0	1	0	0	0	0	0	0	0	12861	1247	43	4		4	PTGS1	9	125149046	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	397545	125149046	16064385	1039	103734											
OR1J4	26219	broad.mit.edu	37	chr9	125281931	125281931	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgtccttttgtgctgAcaacaccatcccccatttct	5	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125281931	T	T	125281931	3	4	106	1	0	0	0	0	1	0	0	0	11055	275	10	5	514	5	OR1J4	9	125281931	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	132885	125281931	15931500	1040	103735											
OR1N2	138882	broad.mit.edu	37	chr9	125315646	125315646	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgctcattatcctggccatCagctctgacccacacctcca	5	18	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125315646	G	G	125315646	3	3	106	1	0	0	0	0	1	0	0	0	11064	816	29	4	200	4	OR1N2	9	125315646	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	33715	125315646	15897785	1041	103736											
DENND1A	57706	broad.mit.edu	37	chr9	126433706	126433706	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgagcccttagtaagatAcctgcagggaggtctgggca	15	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126433706	T	T	126433706	1	4	106	0	1	0	0	0	0	0	0	0	4466	406	14	5		5	DENND1A	9	126433706	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1118060	126433706	14779725	1042	103737											
DENND1A	57706	broad.mit.edu	37	chr9	126641241	126641241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagtacctgaaagagtgCcacctgtcctgggataggcc	12	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126641241	A	A	126641241	3	1	106	1	0	0	0	0	1	0	0	0	4466	739	26	3	3143	3	DENND1A	9	126641241	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	207535	126641241	14572190	1043	103738											
NEK6	10783	broad.mit.edu	37	chr9	127089784	127089784	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctggtgaccatgcagggaGacgcaaacattctccccacg	10	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127089784	A	A	127089784	1	1	106	0	1	0	0	0	0	0	0	0	10423	957	33	4		4	NEK6	9	127089784	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	448543	127089784	14123647	1044	103739											
OLFML2A	169611	broad.mit.edu	37	chr9	127566288	127566288	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccactccctgagggcccctGagatgggggcccagtggacc	14	15	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127566288	T	T	127566288	1	4	106	0	1	0	0	0	0	0	0	0	10952	1305	45	3		3	OLFML2A	9	127566288	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	476504	127566288	13647143	1045	103740											
LMX1B	4010	broad.mit.edu	37	chr9	129453365	129453365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgaggcctggcctgagCtgggggcaggcctcagggac	19	12	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129453365	T	T	129453365	1	4	106	0	1	0	0	0	0	0	0	0	8936	812	28	4		4	LMX1B	9	129453365	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1887077	129453365	11760066	1046	103741											
RALGPS1	9649	broad.mit.edu	37	chr9	129974501	129974501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaccctgctcaaggaaGggcggaagcctgcggtaagt	14	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129974501	T	T	129974501	3	4	106	1	0	0	0	0	1	0	0	0	13125	1000	35	2	1393	2	RALGPS1	9	129974501	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	521136	129974501	11238930	1047	103742											
GARNL3	84253	broad.mit.edu	37	chr9	130073925	130073925	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccattacagaatgcaactgCcctgcctggtacttggcgaa	9	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130073925	G	G	130073925	3	3	106	1	0	0	0	0	1	0	0	0	6303	739	26	4	240	4	GARNL3	9	130073925	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	99424	130073925	11139506	1048	103743											
GARNL3	84253	broad.mit.edu	37	chr9	130101923	130101923	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaatattctctacttaGgctgaaaatattttcagaag	6	7	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130101923	A	A	130101923	5	1	106	1	0	0	0	0	0	0	1	0	6303	1014	35	4	1078	4	GARNL3	9	130101923	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	27998	130101923	11111508	1049	103744											
STXBP1	6812	broad.mit.edu	37	chr9	130420719	130420719	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggctgtgtatctcatcactCcatccgagaaggtaaacctt	8	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130420719	G	G	130420719	3	3	106	1	0	0	0	0	1	0	0	0	15470	855	30	4	249	4	STXBP1	9	130420719	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	318796	130420719	10792712	1050	103745											
AK1	203	broad.mit.edu	37	chr9	130634058	130634058	+	Intron	DEL	C	-	-													catggggatgggagtcttatCctgccccagcccaccaggat							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130634058	-	-	130634058	6	5	106	0	1	1	0	1	0	0	0	0	439	870	30	0		0	AK1	9	130634058	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	213339	130634058	10579373	1051	103746											
CIZ1	25792	broad.mit.edu	37	chr9	130940541	130940541	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtcatcccatttcacgGtgggggaaacacaaggaggc	14	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130940541	A	A	130940541	1	1	106	0	1	0	0	0	0	0	0	0	3472	1276	44	4		4	CIZ1	9	130940541	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	306483	130940541	10272890	1052	103747											
FAM73B	84895	broad.mit.edu	37	chr9	131822938	131822938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgccaccgaggtgactcgGggtggggaccaagcctgggg	18	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131822938	T	T	131822938	1	4	106	0	1	0	0	0	0	0	0	0	5669	1247	43	2		2	FAM73B	9	131822938	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	882397	131822938	9390493	1053	103748											
LAMC3	10319	broad.mit.edu	37	chr9	133914297	133914297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcacgtttgatcgggaGctcttccgcagcacaggcca	12	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133914297	T	T	133914297	3	4	106	1	0	0	0	0	1	0	0	0	8688	962	34	3	1041	3	LAMC3	9	133914297	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2091359	133914297	7299134	1054	103749											
LAMC3	10319	broad.mit.edu	37	chr9	133962641	133962641	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctctgtttcctcacctgtAaaatagttagaattgctcct	6	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133962641	T	T	133962641	1	4	106	0	1	0	0	0	0	0	0	0	8688	377	13	5		5	LAMC3	9	133962641	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	48344	133962641	7250790	1055	103750											
NUP214	8021	broad.mit.edu	37	chr9	134049354	134049354	+	Intron	DEL	T	-	-													atcattttacaagttgagtaTtttttttttttatcaacagt					rs79169508		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134049354	-	-	134049354	6	5	106	0	1	1	0	1	0	0	0	0	10857	1508	52	0		0	NUP214	9	134049354	Intron	DEL	T	TCGA-44-2656-01A-02D-0969-08	86713	134049354	7164077	1056	103751											
DBH	1621	broad.mit.edu	37	chr9	136508756	136508756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtctcctgcctgggcccCtggcatccccacacctctgt	10	18	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136508756	A	A	136508756	1	1	106	0	1	0	0	0	0	0	0	0	4283	696	24	2		2	DBH	9	136508756	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2459402	136508756	4704675	1057	103752											
COL5A1	1289	broad.mit.edu	37	chr9	137623482	137623482	+	Frame_Shift_Del	DEL	G	-	-													gagatcgggccgggaatgccGgcgaaccaggataccatcta							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	137623482	-	-	137623482	7	5	106	1	0	1	0	1	0	0	0	0	3728	1103	39	0	1335	0	COL5A1	9	137623482	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	1114726	137623482	3589949	1058	103753											
COL5A1	1289	broad.mit.edu	37	chr9	137646119	137646119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctcttacccctggcagGgtcctcgaggtgtgcaaggc	13	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137646119	T	T	137646119	3	4	106	1	0	0	0	0	1	0	0	0	3728	1246	43	2	1836	2	COL5A1	9	137646119	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	22637	137646119	3567312	1059	103754											
COL5A1	1289	broad.mit.edu	37	chr9	137655627	137655627	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggtgggggctcagtgtggaGaaaggctttgtccaaggctc	17	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137655627	A	A	137655627	1	1	106	0	1	0	0	0	0	0	0	0	3728	957	33	4		4	COL5A1	9	137655627	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	9508	137655627	3557804	1060	103755											
COL5A1	1289	broad.mit.edu	37	chr9	137658860	137658860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagggtccccagggagaGcctggccccccaggacagca	14	15	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137658860	T	T	137658860	3	4	106	1	0	0	0	0	1	0	0	0	3728	962	34	3	2238	3	COL5A1	9	137658860	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3233	137658860	3554571	1061	103756											
COL5A1	1289	broad.mit.edu	37	chr9	137715349	137715349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcccagaaagcgggacgGgggctctggctagctccgag	17	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137715349	T	T	137715349	1	4	106	0	1	0	0	0	0	0	0	0	3728	1247	43	2		2	COL5A1	9	137715349	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	56489	137715349	3498082	1062	103757											
SDCCAG3	10807	broad.mit.edu	37	chr9	139301896	139301896	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcctcctcctcatccaGgaggtcaccagcccctgtcg	7	19	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139301896	A	A	139301896	2	1	106	1	0	0	0	0	0	0	0	1	14071	991	35	4		4	SDCCAG3	9	139301896	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1586547	139301896	1911535	1063	103758											
ABCA2	20	broad.mit.edu	37	chr9	139905197	139905198	+	Intron	INS	-	A	A													acaggcatgcgccttgggggINSacagggtggacagtgtccag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139905198	A	A	139905197	6	5	106	0	1	1	1	0	0	0	0	0	32	1189	41	0		0	ABCA2	9	139905197	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	603301	139905197	1308234	1064	103759											
C9orf140	89958	broad.mit.edu	37	chr9	139959973	139959973	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacagggctgtggcactcaCggcgctggctctgctctggc	16	13	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139959973	T	T	139959973	5	4	106	1	0	0	0	0	0	0	1	0	2486	550	19	4	368	4	C9orf140	9	139959973	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	54776	139959973	1253458	1065	103760											
EHMT1	79813	broad.mit.edu	37	chr9	140672248	140672248	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatccgcagctctcacttAgaaaacagcgctctcgggca	8	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140672248	T	T	140672248	1	4	106	0	1	0	0	0	0	0	0	0	5023	435	15	5		5	EHMT1	9	140672248	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	712275	140672248	541183	1066	103761											
ZMYND11	10771	broad.mit.edu	37	chr10	294355	294355	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccatcgaaaaagtctccgTgtcaactcagacaaagaagt	8	11	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	294355	C	C	294355	3	2	106	1	0	0	0	0	1	0	0	0	17832	1696	59	5	1353	5	ZMYND11	10	294355	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08		294355	135240392	1067	103762											
DIP2C	22982	broad.mit.edu	37	chr10	409175	409175	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccactggaaactgtcctcttCcgtggagtcaggcctctgct	10	14	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	409175	T	T	409175	3	4	106	1	0	0	0	0	1	0	0	0	4569	864	30	4	2184	4	DIP2C	10	409175	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	114820	409175	135125572	1068	103763											
PFKFB3	5209	broad.mit.edu	37	chr10	6261767	6261767	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctttaaaaaaatttttttaAgacagttttttttgtagaga	5	3	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6261767	T	T	6261767	1	4	106	0	1	0	0	0	0	0	0	0	11857	87	3	5		5	PFKFB3	10	6261767	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	5852592	6261767	129272980	1069	103764											
SFMBT2	57713	broad.mit.edu	37	chr10	7214428	7214428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagatgacagagctacaGgctggcaggtgccccgggca	16	12	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7214428	T	T	7214428	1	4	106	0	1	0	0	0	0	0	0	0	14271	1015	35	2		2	SFMBT2	10	7214428	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	952661	7214428	128320319	1070	103765											
ITIH2	3698	broad.mit.edu	37	chr10	7763676	7763676	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctaactgccgggagactgCggtagatggggaactggtgg	17	9	0	2	rs141514196		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7763676	T	T	7763676	3	4	106	1	0	0	0	0	1	0	0	0	7974	768	27	4	833	4	ITIH2	10	7763676	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	549248	7763676	127771071	1071	103766											
ITIH2	3698	broad.mit.edu	37	chr10	7773794	7773794	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattctacaaccaggtctcCactccattgctccggaatgt	6	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7773794	A	A	7773794	2	1	106	1	0	0	0	0	0	0	0	1	7974	581	21	2		2	ITIH2	10	7773794	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	10118	7773794	127760953	1072	103767											
UCMA	221044	broad.mit.edu	37	chr10	13264144	13264144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagataggatgggtgcaggcCgtcatagtgccactggcgcc	16	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13264144	A	A	13264144	3	1	106	1	0	0	0	0	1	0	0	0	17052	652	23	1	44	1	UCMA	10	13264144	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	5490350	13264144	122270603	1073	103768											
CUBN	8029	broad.mit.edu	37	chr10	16873350	16873350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attattttgagagaagacagGgtttggcagcagagttccac	12	6	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16873350	T	T	16873350	3	4	106	1	0	0	0	0	1	0	0	0	4084	1232	43	2	454	2	CUBN	10	16873350	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3609206	16873350	118661397	1074	103769											
CUBN	8029	broad.mit.edu	37	chr10	16982288	16982288	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattgagagaatagacttTgggattctcccggatcacat	9	7	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16982288	C	C	16982288	1	2	106	0	1	0	0	0	0	0	0	0	4084	1827	63	5		5	CUBN	10	16982288	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	108938	16982288	118552459	1075	103770											
CUBN	8029	broad.mit.edu	37	chr10	17169920	17169921	+	Nonsense_Mutation	DNP	GG	AA	AA													aatatcttctttgtttttctGgatctaattttagaaaaaga							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	17169921	AA	AA	17169920	4	1	106	1	0	0	0	0	0	1	0	0	4084	1357	47	4	10875	4	CUBN	10	17169920	Nonsense_Mutation	DNP	GG	TCGA-44-2656-01A-02D-0969-08	187632	17169920	118364827	1076	103771											
APBB1IP	54518	broad.mit.edu	37	chr10	26849900	26849901	+	Intron	DNP	TC	AT	AT													atatgtttctcacctgatgaTcaggctcaaactccccgact							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	26849901	AT	AT	26849900	1	1	106	0	1	0	0	0	0	0	0	0	762	1450	50	5		5	APBB1IP	10	26849900	Intron	DNP	TC	TCGA-44-2656-01A-02D-0969-08	9679980	26849900	108684847	1077	103772											
ZEB1	6935	broad.mit.edu	37	chr10	31810643	31810643	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccagttgtaaatgtaatcCcaccaagtgccaaccccata	5	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31810643	T	T	31810643	3	4	106	1	0	0	0	0	1	0	0	0	17749	623	22	4	2420	4	ZEB1	10	31810643	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4960743	31810643	103724104	1078	103773											
ALOX5	240	broad.mit.edu	37	chr10	45907644	45907644	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctcatgctcagatggaTggagtggaaccctggcttcc	11	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45907644	A	A	45907644	3	1	106	1	0	0	0	0	1	0	0	0	540	1464	51	5	451	5	ALOX5	10	45907644	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	14097001	45907644	89627103	1079	103774											
PPYR1	5540	broad.mit.edu	37	chr10	47087209	47087209	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccctggagaggcatcagctCatcatcaacccaacaggctg	10	14	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47087209	T	T	47087209	2	4	106	1	0	0	0	0	0	0	0	1	12517	813	29	4		4	PPYR1	10	47087209	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1179565	47087209	88447538	1080	103775											
FRMPD2	143162	broad.mit.edu	37	chr10	49444598	49444598	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaactctggcctggaaaacTggaggaaaacagtcacatat	10	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49444598	A	A	49444598	5	1	106	1	0	0	0	0	0	0	1	0	6118	1594	55	5	3093	5	FRMPD2	10	49444598	Splice_Site	SNP	T	TCGA-44-2656-01A-02D-0969-08	2357389	49444598	86090149	1081	103776											
CHAT	1103	broad.mit.edu	37	chr10	50835836	50835836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtcctcgtgaaaggtcaGccgcagtgcccagcacatct	11	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50835836	T	T	50835836	1	4	106	0	1	0	0	0	0	0	0	0	3344	986	34	3		3	CHAT	10	50835836	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1391238	50835836	84698911	1082	103777											
OGDHL	55753	broad.mit.edu	37	chr10	50943220	50943220	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcccctccccttttcatcaCccccttggtccccagcaaac	4	22	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50943220	G	G	50943220	1	3	106	0	1	0	0	0	0	0	0	0	10935	522	18	4		4	OGDHL	10	50943220	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	107384	50943220	84591527	1083	103778											
A1CF	29974	broad.mit.edu	37	chr10	52580401	52580401	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcgaattttcttcaccctctCcacagcacctgtaaaataga	4	13	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52580401	G	G	52580401	3	3	106	1	0	0	0	0	1	0	0	0	2	864	30	4	1030	4	A1CF	10	52580401	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1637181	52580401	82954346	1084	103779											
PCDH15	65217	broad.mit.edu	37	chr10	55996851	55996851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttactagttaattttgaatGttaagggggagcaaagtatt	10	2	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55996851	T	T	55996851	1	4	106	0	1	0	0	0	0	0	0	0	11605	1392	48	3		3	PCDH15	10	55996851	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3416450	55996851	79537896	1085	103780											
PCDH15	65217	broad.mit.edu	37	chr10	56138765	56138765	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaattctttagcaaagatCatgctcttaaaccgcggctg	8	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138765	T	T	56138765	1	4	106	0	1	0	0	0	0	0	0	0	11605	841	29	4		4	PCDH15	10	56138765	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	141914	56138765	79395982	1086	103781											
BICC1	80114	broad.mit.edu	37	chr10	60562750	60562750	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatagctgatgatgataaAcatgcatagtaaatgtggca	9	4	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60562750	T	T	60562750	1	4	106	0	1	0	0	0	0	0	0	0	1433	58	2	5		5	BICC1	10	60562750	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	4423985	60562750	74971997	1087	103782											
FAM13C	220965	broad.mit.edu	37	chr10	61023711	61023711	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgctttatttcaaaaGggagttacagtctaagcaga	11	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61023711	A	A	61023711	1	1	106	0	1	0	0	0	0	0	0	0	5500	1015	35	4		4	FAM13C	10	61023711	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	460961	61023711	74511036	1088	103783											
FAM13C	220965	broad.mit.edu	37	chr10	61083903	61083903	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaagtagatgagctgtcaAcagcaatcagttccatagca	8	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61083903	T	T	61083903	1	4	106	0	1	0	0	0	0	0	0	0	5500	58	2	5		5	FAM13C	10	61083903	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	60192	61083903	74450844	1089	103784											
CTNNA3	29119	broad.mit.edu	37	chr10	68936738	68936738	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtcagacttttgattaCagagctgaaagacagaaatt	9	7	1	6			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68936738	G	G	68936738	1	3	106	0	1	0	0	0	0	0	0	0	4048	493	17	4		4	CTNNA3	10	68936738	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	7852835	68936738	66598009	1090	103785											
TET1	80312	broad.mit.edu	37	chr10	70446412	70446412	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attccccgaatcaagcggaaGaataactcaacaacaacaaa	5	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70446412	T	T	70446412	3	4	106	1	0	0	0	0	1	0	0	0	15891	933	33	3	5390	3	TET1	10	70446412	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1509674	70446412	65088335	1091	103786											
TET1	80312	broad.mit.edu	37	chr10	70450858	70450858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgctgctgatggccctGgcatttcacagcttggcgaa	12	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70450858	T	T	70450858	3	4	106	1	0	0	0	0	1	0	0	0	15891	1348	47	2	5740	2	TET1	10	70450858	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	4446	70450858	65083889	1092	103787											
COL13A1	1305	broad.mit.edu	37	chr10	71582220	71582220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccctgcaaataggtgacCgcggatgttcctaagactga	11	11	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71582220	A	A	71582220	1	1	106	0	1	0	0	0	0	0	0	0	3702	667	23	1		1	COL13A1	10	71582220	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1131362	71582220	63952527	1093	103788											
KIAA1274	27143	broad.mit.edu	37	chr10	72293678	72293678	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcctcatggtctttcccagGagacccccagcctgctgcag	9	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72293678	T	T	72293678	4	4	106	1	0	0	0	0	0	1	0	0	8290	1188	41	3	897	3	KIAA1274	10	72293678	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	711458	72293678	63241069	1094	103789											
ADAMTS14	140766	broad.mit.edu	37	chr10	72509869	72509869	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcaagggcaaggcacCttccatcctgggattagctc	12	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72509869	T	T	72509869	1	4	106	0	1	0	0	0	0	0	0	0	259	696	24	4		4	ADAMTS14	10	72509869	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	216191	72509869	63024878	1095	103790											
UNC5B	219699	broad.mit.edu	37	chr10	73047403	73047403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcaccctgctccaaccGctgtggccgaggctggcaga	14	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73047403	T	T	73047403	3	4	106	1	0	0	0	0	1	0	0	0	17118	1087	38	3	804	3	UNC5B	10	73047403	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	537534	73047403	62487344	1096	103791											
USP54	159195	broad.mit.edu	37	chr10	75290091	75290091	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgagagtgtaaaggcagggtCctaggaggttttttgtcagg	16	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75290091	T	T	75290091	2	4	106	1	0	0	0	0	0	0	0	1	17212	854	30	4		4	USP54	10	75290091	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2242688	75290091	60244656	1097	103792											
MYST4	23522	broad.mit.edu	37	chr10	76736089	76736089	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacctgatcaggatgatgGtaagcaaaaggtcaaagctc	10	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76736089	T	T	76736089	5	4	106	1	0	0	0	0	0	0	1	0	10199	1275	44	3	2016	3	MYST4	10	76736089	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	1445998	76736089	58798658	1098	103793											
C10orf11	83938	broad.mit.edu	37	chr10	77806779	77806779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaaaagtagcaataccGtatacccacagctgaattga	8	8	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77806779	T	T	77806779	1	4	106	0	1	0	0	0	0	0	0	0	1593	1160	40	3		3	C10orf11	10	77806779	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1070690	77806779	57727968	1099	103794											
PPIF	10105	broad.mit.edu	37	chr10	81108691	81108691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcctcccatgggggttGgcaataatgggaatggaatg	15	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81108691	T	T	81108691	1	4	106	0	1	0	0	0	0	0	0	0	12424	1363	47	2		2	PPIF	10	81108691	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3301912	81108691	54426056	1100	103795											
LRIT2	340745	broad.mit.edu	37	chr10	85982088	85982089	+	Missense_Mutation	DNP	CC	AA	AA													ccacagcataagtattgattCcggggccaatgtgaaccacc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	85982089	AA	AA	85982088	3	1	106	1	0	0	0	0	1	0	0	0	9035	855	30	3	415	3	LRIT2	10	85982088	Missense_Mutation	DNP	CC	TCGA-44-2656-01A-02D-0969-08	4873397	85982088	49552659	1101	103796											
GRID1	2894	broad.mit.edu	37	chr10	87628799	87628799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggtagccttcctgggggtCgcagagcagggaggagatgc	19	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87628799	A	A	87628799	3	1	106	1	0	0	0	0	1	0	0	0	6837	884	31	3	2154	3	GRID1	10	87628799	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1646711	87628799	47905948	1102	103797											
WAPAL	23063	broad.mit.edu	37	chr10	88220279	88220279	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaagaaacaaacgtaagTtagtatttatcatcgatact	6	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88220279	A	A	88220279	1	1	106	0	1	0	0	0	0	0	0	0	17375	1740	60	5		5	WAPAL	10	88220279	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	591480	88220279	47314468	1103	103798											
LIPK	643414	broad.mit.edu	37	chr10	90486557	90486557	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttcctctttttagagccaGattatttcttactggggtta	7	8	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90486557	C	C	90486557	3	2	106	1	0	0	0	0	1	0	0	0	8900	933	33	4	117	4	LIPK	10	90486557	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2266278	90486557	45048190	1104	103799											
LIPK	643414	broad.mit.edu	37	chr10	90499787	90499787	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatttgtcacacaatcctgCgggaacatctgttcagaata	7	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90499787	T	T	90499787	3	4	106	1	0	0	0	0	1	0	0	0	8900	768	27	4	877	4	LIPK	10	90499787	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	13230	90499787	45034960	1105	103800											
CPEB3	22849	broad.mit.edu	37	chr10	93898081	93898081	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagaaactgagaccttataCaacacctccattgaggtgat	7	9	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93898081	G	G	93898081	1	3	106	0	1	0	0	0	0	0	0	0	3834	493	17	4		4	CPEB3	10	93898081	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3398294	93898081	41636666	1106	103801											
EXOC6	54536	broad.mit.edu	37	chr10	94594605	94594605	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaccgttgcattttattGtgtcttctttagcggtgata	11	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94594605	A	A	94594605	1	1	106	0	1	0	0	0	0	0	0	0	5350	1392	48	4		4	EXOC6	10	94594605	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	696524	94594605	40940142	1107	103802											
CYP26A1	1592	broad.mit.edu	37	chr10	94834760	94834761	+	Frame_Shift_Ins	INS	-	T	T													agcagcagcttgtggaggccINSttcgaggaaatgacccgcaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94834761	T	T	94834760	7	5	106	1	0	1	1	0	0	0	0	0	4188	668	24	0	649	0	CYP26A1	10	94834760	Frame_Shift_Ins	INS	-	TCGA-44-2656-01A-02D-0969-08	240155	94834760	40699987	1108	103803											
PDE6C	5146	broad.mit.edu	37	chr10	95425130	95425130	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttactagctgctgaagattcAggaggtggtgatgacaaaaa	12	5	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95425130	T	T	95425130	2	4	106	1	0	0	0	0	0	0	0	1	11741	175	7	5		5	PDE6C	10	95425130	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	590370	95425130	40109617	1109	103804											
PLCE1	51196	broad.mit.edu	37	chr10	96005857	96005858	+	Missense_Mutation	DNP	CA	AG	AG													ccatccaagccgatgtgcacCagttcctgctgcagggggcc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	96005858	AG	AG	96005857	3	1	106	1	0	0	0	0	1	0	0	0	12129	595	21	2	2887	2	PLCE1	10	96005857	Missense_Mutation	DNP	CA	TCGA-44-2656-01A-02D-0969-08	580727	96005857	39528890	1110	103805											
TLL2	7093	broad.mit.edu	37	chr10	98188503	98188504	+	Frame_Shift_Ins	INS	-	C	C													ttaaaaatggccctctggctINSccctgaaacaacagggcaag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98188504	C	C	98188503	7	5	106	1	0	1	1	0	0	0	0	0	16069	1551	54	0	2592	0	TLL2	10	98188503	Frame_Shift_Ins	INS	-	TCGA-44-2656-01A-02D-0969-08	2182646	98188503	37346244	1111	103806											
SLIT1	6585	broad.mit.edu	37	chr10	98802742	98802742	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctggcatcgcgggttccCcgtcacgatcttgcgcttcc	11	15	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98802742	T	T	98802742	3	4	106	1	0	0	0	0	1	0	0	0	14853	623	22	4	2596	4	SLIT1	10	98802742	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	614239	98802742	36732005	1112	103807											
RRP12	23223	broad.mit.edu	37	chr10	99130131	99130131	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagggccagggcacagagCtctccccaccttttttgagg	11	15	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99130131	T	T	99130131	1	4	106	0	1	0	0	0	0	0	0	0	13797	812	28	4		4	RRP12	10	99130131	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	327389	99130131	36404616	1113	103808											
LOXL4	84171	broad.mit.edu	37	chr10	100017495	100017495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggacccttccagggcaGggcagtcgctgagggtccgc	16	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100017495	T	T	100017495	3	4	106	1	0	0	0	0	1	0	0	0	8989	1000	35	2	1130	2	LOXL4	10	100017495	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	887364	100017495	35517252	1114	103809											
DNMBP	23268	broad.mit.edu	37	chr10	101643712	101643712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtccagattcgggtgcagCcaaaactactattttttttt	7	8	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101643712	A	A	101643712	1	1	106	0	1	0	0	0	0	0	0	0	4714	754	26	3		3	DNMBP	10	101643712	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1626217	101643712	33891035	1115	103810											
PKD2L1	9033	broad.mit.edu	37	chr10	102053176	102053176	+	Intron	DEL	C	-	-													cctgggtcctcacccccagaCccactgaaaggattgagccc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102053176	-	-	102053176	6	5	106	0	1	1	0	1	0	0	0	0	12062	522	18	0		0	PKD2L1	10	102053176	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	409464	102053176	33481571	1116	103811											
LZTS2	84445	broad.mit.edu	37	chr10	102763886	102763886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagcttcagcagctgcGggacagtctggacgagaatg	16	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102763886	T	T	102763886	3	4	106	1	0	0	0	0	1	0	0	0	9227	1116	39	1	1037	1	LZTS2	10	102763886	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	710710	102763886	32770861	1117	103812											
ELOVL3	83401	broad.mit.edu	37	chr10	103988649	103988649	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactggtaccaccacagcacAgtgctcgtgtacacaagctt	8	14	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103988649	T	T	103988649	2	4	106	1	0	0	0	0	0	0	0	1	5117	175	7	5		5	ELOVL3	10	103988649	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	1224763	103988649	31546098	1118	103813											
PSD	5662	broad.mit.edu	37	chr10	104173662	104173662	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaaggaccatcagcagCagagctggtaccagaatccg	11	12	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104173662	G	G	104173662	3	3	106	1	0	0	0	0	1	0	0	0	12752	710	25	4	1709	4	PSD	10	104173662	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	185013	104173662	31361085	1119	103814											
CALHM2	51063	broad.mit.edu	37	chr10	105209690	105209690	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaagttctctgcgatcagGgctgccatggcgatagtcgt	14	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105209690	T	T	105209690	2	4	106	1	0	0	0	0	0	0	0	1	2609	1219	43	2		2	CALHM2	10	105209690	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1036028	105209690	30325057	1120	103815											
SORCS3	22986	broad.mit.edu	37	chr10	106802840	106802840	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctccatggactttggaagaCggtggcaactcatgcatgaa	12	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106802840	G	G	106802840	3	3	106	1	0	0	0	0	1	0	0	0	15046	527	19	4	1000	4	SORCS3	10	106802840	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1593150	106802840	28731907	1121	103816											
TCF7L2	6934	broad.mit.edu	37	chr10	114918424	114918424	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatttgttcttttttttcAgaacacagcgaatgtttcct	5	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114918424	T	T	114918424	1	4	106	0	1	0	0	0	0	0	0	0	15820	202	7	5		5	TCF7L2	10	114918424	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	8115584	114918424	20616323	1122	103817											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118225391	118225391	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcacataattctttggtaCaaataaaattatatgtaact	4	5	2	0	rs113265812	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118225391	G	G	118225391	1	3	106	0	1	0	0	0	0	0	0	0	12247	493	17	4		4	PNLIPRP3	10	118225391	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3306967	118225391	17309356	1123	103818											
C10orf82	143379	broad.mit.edu	37	chr10	118425181	118425181	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgcaggaccgtctcctcgGagttgacaggtttcagtttc	11	12	2	1	rs138140121	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118425181	T	T	118425181	3	4	106	1	0	0	0	0	1	0	0	0	1631	1174	41	3	264	3	C10orf82	10	118425181	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	199790	118425181	17109566	1124	103819											
HSPA12A	259217	broad.mit.edu	37	chr10	118439004	118439004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagcccgaggtgatgagCccaactcacttgcttttccg	10	14	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118439004	A	A	118439004	1	1	106	0	1	0	0	0	0	0	0	0	7473	754	26	3		3	HSPA12A	10	118439004	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	13823	118439004	17095743	1125	103820											
HSPA12A	259217	broad.mit.edu	37	chr10	118460771	118460771	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggcactctgcttcagctgGatgagcagctactagagaca	12	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118460771	T	T	118460771	1	4	106	0	1	0	0	0	0	0	0	0	7473	1189	41	3		3	HSPA12A	10	118460771	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	21767	118460771	17073976	1126	103821											
KCNK18	338567	broad.mit.edu	37	chr10	118960761	118960761	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacactggtccttcctgagCtcgctctttttctgctgcac	7	15	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118960761	T	T	118960761	2	4	106	1	0	0	0	0	0	0	0	1	8135	796	28	4		4	KCNK18	10	118960761	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	499990	118960761	16573986	1127	103822											
PRLHR	2834	broad.mit.edu	37	chr10	120354908	120354908	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtagcaaaaagtgttgTcctctcacctctgtaaaata	6	8	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120354908	C	C	120354908	1	2	106	0	1	0	0	0	0	0	0	0	12636	1682	58	5		5	PRLHR	10	120354908	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1394147	120354908	15179839	1128	103823											
GRK5	2869	broad.mit.edu	37	chr10	121072548	121072550	+	Intron	DEL	TGA	-	-													ggtagtggtaatggcagtggTgatggtggtggtggtaatga					rs142527759	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121072550	-	-	121072548	6	5	106	0	1	1	0	1	0	0	0	0	6858	1711	59	0		0	GRK5	10	121072548	Intron	DEL	TGA	TCGA-44-2656-01A-02D-0969-08	717640	121072548	14462199	1129	103824											
GRK5	2869	broad.mit.edu	37	chr10	121190064	121190064	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccccgggggcaccagtggCtcaatgtgggccccgggggc	17	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121190064	G	G	121190064	1	3	106	0	1	0	0	0	0	0	0	0	6858	812	28	4		4	GRK5	10	121190064	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	117516	121190064	14344683	1130	103825											
BUB3	9184	broad.mit.edu	37	chr10	124923182	124923182	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattaaatattccatatcagAtatgcttttacaggtttgac	5	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124923182	T	T	124923182	1	4	106	0	1	0	0	0	0	0	0	0	1582	348	12	5		5	BUB3	10	124923182	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3733118	124923182	10611565	1131	103826											
ADAM12	8038	broad.mit.edu	37	chr10	127708131	127708131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattgtcatgtctattttaCggtattcccagttgtagggg	10	6	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127708131	A	A	127708131	1	1	106	0	1	0	0	0	0	0	0	0	236	551	19	3		3	ADAM12	10	127708131	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2784949	127708131	7826616	1132	103827											
ADAM12	8038	broad.mit.edu	37	chr10	127753557	127753557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggagtccctgcacgctgttCctgcaggcttcagctggaag	13	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127753557	A	A	127753557	3	1	106	1	0	0	0	0	1	0	0	0	236	855	30	3	1441	3	ADAM12	10	127753557	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	45426	127753557	7781190	1133	103828											
GLRX3	10539	broad.mit.edu	37	chr10	131958334	131958334	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttttctgtttttcaagGtaaggataaaggtggtacaa	9	6	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131958334	T	T	131958334	5	4	106	1	0	0	0	0	0	0	1	0	6525	1275	44	3	287	3	GLRX3	10	131958334	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	4204777	131958334	3576413	1134	103829											
DPYSL4	10570	broad.mit.edu	37	chr10	134006447	134006447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgtcgcctaaaggtgcCtttctcagctgtctgccttt	11	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134006447	A	A	134006447	1	1	106	0	1	0	0	0	0	0	0	0	4789	696	24	2		2	DPYSL4	10	134006447	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2048113	134006447	1528300	1135	103830											
STK32C	282974	broad.mit.edu	37	chr10	134040418	134040418	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggtagcgcaggtccccGcccagtagcaggtccacgac	14	14	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134040418	T	T	134040418	2	4	106	1	0	0	0	0	0	0	0	1	15417	1074	38	3		3	STK32C	10	134040418	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	33971	134040418	1494329	1136	103831											
KNDC1	85442	broad.mit.edu	37	chr10	135011791	135011791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagccggtggtgcggcacGtgctggggccactccgcccg	17	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135011791	T	T	135011791	1	4	106	0	1	0	0	0	0	0	0	0	8497	1160	40	3		3	KNDC1	10	135011791	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	971373	135011791	522956	1137	103832											
CYP2E1	1571	broad.mit.edu	37	chr10	135373488	135373488	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttaaaagaaagagaaggTgaagaggattatttcccaaa	10	3	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135373488	A	A	135373488	1	1	106	0	1	0	0	0	0	0	0	0	4203	1711	59	5		5	CYP2E1	10	135373488	3'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	361697	135373488	161259	1138	103833											
RNH1	6050	broad.mit.edu	37	chr11	494979	494979	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctgaggtccagctcaCgcaggctgtggttggccaac	14	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	494979	G	G	494979	3	3	106	1	0	0	0	0	1	0	0	0	13615	536	19	4	191	4	RNH1	11	494979	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08		494979	134511537	1139	103834											
AP2A2	161	broad.mit.edu	37	chr11	1009345	1009345	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtccacagcaggaagtgcAgaacatcttcaaagcaaagc	9	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1009345	T	T	1009345	3	4	106	1	0	0	0	0	1	0	0	0	742	188	7	5	2633	5	AP2A2	11	1009345	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	514366	1009345	133997171	1140	103835											
MUC2	4583	broad.mit.edu	37	chr11	1077683	1077683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcccgcgccggcctcaccCtcatgtggaaccgggaggat	12	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1077683	A	A	1077683	3	1	106	1	0	0	0	0	1	0	0	0	10069	681	24	2	443	2	MUC2	11	1077683	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	68338	1077683	133928833	1141	103836											
BRSK2	9024	broad.mit.edu	37	chr11	1466781	1466781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgtgtgccagcgcgtctcGcgcctctcgcccgctgtagg	13	18	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1466781	T	T	1466781	1	4	106	0	1	0	0	0	0	0	0	0	1533	1102	38	3		3	BRSK2	11	1466781	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	389098	1466781	133539735	1142	103837											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651332	1651332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccagctgtggcaaagggGgctgtggctcttgcgggggc	19	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1651332	T	T	1651332	3	4	106	1	0	0	0	0	1	0	0	0	8636	1232	43	2	264	2	KRTAP5-5	11	1651332	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	184551	1651332	133355184	1143	103838											
TNNT3	7140	broad.mit.edu	37	chr11	1947508	1947508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccagatgctgagagcaGggtttggggacatgggactg	17	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1947508	T	T	1947508	1	4	106	0	1	0	0	0	0	0	0	0	16455	1015	35	2		2	TNNT3	11	1947508	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	296176	1947508	133059008	1144	103839											
TH	7054	broad.mit.edu	37	chr11	2185532	2185532	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccctccagggagcgccgCacggcctgggggctgtccag	15	16	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2185532	A	A	2185532	2	1	106	1	0	0	0	0	0	0	0	1	15961	697	25	3		3	TH	11	2185532	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	238024	2185532	132820984	1145	103840											
TRPM5	29850	broad.mit.edu	37	chr11	2433486	2433486	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtctgtgaagaagccctGggagggaggtgggcagtcca	17	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2433486	A	A	2433486	1	1	106	0	1	0	0	0	0	0	0	0	16714	1363	47	4		4	TRPM5	11	2433486	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	247954	2433486	132573030	1146	103841											
NUP98	4928	broad.mit.edu	37	chr11	3697905	3697905	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagttcctatcactccaatCccacctatagactctacaca	4	15	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3697905	A	A	3697905	1	1	106	0	1	0	0	0	0	0	0	0	10868	870	30	3		3	NUP98	11	3697905	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1264419	3697905	131308611	1147	103842											
STIM1	6786	broad.mit.edu	37	chr11	4104157	4104157	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacactctttggcaccttcCacgtggcccacagctcttcc	6	18	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4104157	T	T	4104157	3	4	106	1	0	0	0	0	1	0	0	0	15401	594	21	4	1217	4	STIM1	11	4104157	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	406252	4104157	130902359	1148	103843											
OR52B4	143496	broad.mit.edu	37	chr11	4389399	4389399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatgagcaggctgttccCaagaagggcggtgacatagg	16	7	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4389399	A	A	4389399	3	1	106	1	0	0	0	0	1	0	0	0	11206	594	21	2	821	2	OR52B4	11	4389399	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	285242	4389399	130617117	1149	103844											
OR52K1	390036	broad.mit.edu	37	chr11	4510989	4510989	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttctatctccttttcccaCccatggtcaatcctatcata	2	14	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4510989	G	G	4510989	3	3	106	1	0	0	0	0	1	0	0	0	11217	507	18	4	861	4	OR52K1	11	4510989	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	121590	4510989	130495527	1150	103845											
OR51D1	390038	broad.mit.edu	37	chr11	4661635	4661635	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagctgtcctgtactgacacCagggtcaatgtggtttatgg	12	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4661635	G	G	4661635	2	3	106	1	0	0	0	0	0	0	0	1	11187	581	21	4		4	OR51D1	11	4661635	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	150646	4661635	130344881	1151	103846											
HBE1	3046	broad.mit.edu	37	chr11	5291184	5291185	+	5'UTR	DEL	CT	-	-													aagcagatatgtgctgctgcCtctctgtctggccttttatt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5291185	-	-	5291184	6	5	106	0	1	1	0	1	0	0	0	0	7046	696	24	0		0	HBE1	11	5291184	5'UTR	DEL	CT	TCGA-44-2656-01A-02D-0969-08	629549	5291184	129715332	1152	103847											
OR51Q1	390061	broad.mit.edu	37	chr11	5444315	5444315	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaaccccatcatttacagTgtaaagaacaagcagatcca	6	10	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5444315	A	A	5444315	3	1	106	1	0	0	0	0	1	0	0	0	11198	1693	59	5	887	5	OR51Q1	11	5444315	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	153131	5444315	129562201	1153	103848											
FAM160A2	84067	broad.mit.edu	37	chr11	6240320	6240320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggagtcaccataagagCtctctgccctccaagccatt	10	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6240320	A	A	6240320	1	1	106	0	1	0	0	0	0	0	0	0	5515	812	28	3		3	FAM160A2	11	6240320	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	796005	6240320	128766196	1154	103849											
APBB1	322	broad.mit.edu	37	chr11	6423312	6423312	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccaagccctattcccacCttccactgtcccgcccgacg	5	21	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6423312	T	T	6423312	3	4	106	1	0	0	0	0	1	0	0	0	761	695	24	4	778	4	APBB1	11	6423312	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	182992	6423312	128583204	1155	103850											
HPX	3263	broad.mit.edu	37	chr11	6452734	6452734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaacatagcatggcttcCatgtcatggggatcctgacc	9	12	1	1	rs34901281		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6452734	A	A	6452734	1	1	106	0	1	0	0	0	0	0	0	0	7413	609	21	2		2	HPX	11	6452734	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	29422	6452734	128553782	1156	103851											
TUB	7275	broad.mit.edu	37	chr11	8061246	8061246	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggagatcgctcggtgagcTggaggggaggagggcgtgcc	22	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8061246	C	C	8061246	1	2	106	0	1	0	0	0	0	0	0	0	16868	1595	55	5		5	TUB	11	8061246	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1608512	8061246	126945270	1157	103852											
SBF2	81846	broad.mit.edu	37	chr11	9985307	9985307	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgcttacttgggaaagatCacattttattaccttttcag	6	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9985307	A	A	9985307	1	1	106	0	1	0	0	0	0	0	0	0	13971	841	29	3		3	SBF2	11	9985307	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1924061	9985307	125021209	1158	103853											
PDE3B	5140	broad.mit.edu	37	chr11	14793554	14793554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtataattaatatctgTgatgaatatctaaataatat	5	2	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14793554	C	C	14793554	1	2	106	0	1	0	0	0	0	0	0	0	11732	1711	59	5		5	PDE3B	11	14793554	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	4808247	14793554	120212962	1159	103854											
INSC	387755	broad.mit.edu	37	chr11	15243085	15243085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccactcagaggccacacgGgctgaggctgcggctgtggt	16	12	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15243085	T	T	15243085	2	4	106	1	0	0	0	0	0	0	0	1	7834	1219	43	2		2	INSC	11	15243085	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	449531	15243085	119763431	1160	103855											
ABCC8	6833	broad.mit.edu	37	chr11	17470036	17470036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtgtcctgctgcccccCtcccttcccctcagcccatc	6	21	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17470036	A	A	17470036	1	1	106	0	1	0	0	0	0	0	0	0	58	696	24	2		2	ABCC8	11	17470036	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2226951	17470036	117536480	1161	103856											
KCNC1	3746	broad.mit.edu	37	chr11	17793207	17793207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacactgtgtctttatcccCacagtatgtggccttcgctt	8	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17793207	A	A	17793207	1	1	106	0	1	0	0	0	0	0	0	0	8084	609	21	2		2	KCNC1	11	17793207	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	323171	17793207	117213309	1162	103857											
MRGPRX3	117195	broad.mit.edu	37	chr11	18159297	18159297	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatttcattacaatcgcgtGgctggtttttttatgtgtgg	11	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18159297	A	A	18159297	4	1	106	1	0	0	0	0	0	1	0	0	9862	1357	47	4	550	4	MRGPRX3	11	18159297	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	366090	18159297	116847219	1163	103858											
HPS5	11234	broad.mit.edu	37	chr11	18316470	18316470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctggaacacatgaggcCcacgggccacaggctgcaca	12	15	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18316470	A	A	18316470	1	1	106	0	1	0	0	0	0	0	0	0	7409	638	22	2		2	HPS5	11	18316470	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	157173	18316470	116690046	1164	103859											
SPTY2D1	144108	broad.mit.edu	37	chr11	18636375	18636376	+	Frame_Shift_Ins	INS	-	A	A													cagaccgccccggggggcccINSaagccactcactggtcgtcg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18636376	A	A	18636375	7	5	106	1	0	1	1	0	0	0	0	0	15244	593	21	0	627	0	SPTY2D1	11	18636375	Frame_Shift_Ins	INS	-	TCGA-44-2656-01A-02D-0969-08	319905	18636375	116370141	1165	103860											
IGSF22	283284	broad.mit.edu	37	chr11	18745667	18745667	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcccttccctgcccccattCcacttgcctcccacgatctt	3	21	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18745667	A	A	18745667	1	1	106	0	1	0	0	0	0	0	0	0	7670	870	30	3		3	IGSF22	11	18745667	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	109292	18745667	116260849	1166	103861											
PTPN5	84867	broad.mit.edu	37	chr11	18754824	18754824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcatgacaatgatgggCgtgtgctcctgccacaccat	11	11	1	3	rs116891792	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18754824	A	A	18754824	2	1	106	1	0	0	0	0	0	0	0	1	12899	755	27	3		3	PTPN5	11	18754824	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	9157	18754824	116251692	1167	103862											
SLC6A5	9152	broad.mit.edu	37	chr11	20628585	20628585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttacctgatgatgctgGctctggctggattacccatc	9	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20628585	T	T	20628585	3	4	106	1	0	0	0	0	1	0	0	0	14801	1203	42	3	726	3	SLC6A5	11	20628585	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1873761	20628585	114377931	1168	103863											
SLC6A5	9152	broad.mit.edu	37	chr11	20639587	20639587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgacttcactttcatctGcaaaatggggataataacac	7	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20639587	T	T	20639587	1	4	106	0	1	0	0	0	0	0	0	0	14801	1334	46	3		3	SLC6A5	11	20639587	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	11002	20639587	114366929	1169	103864											
NELL1	4745	broad.mit.edu	37	chr11	20982131	20982131	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagctatttaatgaagtcActtgtgagaggttgactgag	12	4	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20982131	G	G	20982131	1	3	106	0	1	0	0	0	0	0	0	0	10428	174	6	5		5	NELL1	11	20982131	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	342544	20982131	114024385	1170	103865											
GAS2	2620	broad.mit.edu	37	chr11	22707259	22707259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggagaagttggacaatgGtgccttgctctgtcaacttg	12	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22707259	T	T	22707259	3	4	106	1	0	0	0	0	1	0	0	0	6307	1261	44	3	197	3	GAS2	11	22707259	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1725128	22707259	112299257	1171	103866											
SLC5A12	159963	broad.mit.edu	37	chr11	26714269	26714269	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaacagatgcagatatatCtctatcttctgagactccat	5	9	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26714269	A	A	26714269	1	1	106	0	1	0	0	0	0	0	0	0	14778	928	32	3		3	SLC5A12	11	26714269	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4007010	26714269	108292247	1172	103867											
KCNA4	3739	broad.mit.edu	37	chr11	30032330	30032330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtctcactgtcatccccCtttccctgacacttctcctc	3	19	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30032330	A	A	30032330	3	1	106	1	0	0	0	0	1	0	0	0	8075	680	24	2	69	2	KCNA4	11	30032330	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3318061	30032330	104974186	1173	103868											
DEPDC7	91614	broad.mit.edu	37	chr11	33054339	33054339	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcagaaagatgtttttaaGgtaaaattgtgaaagtagtt	9	2	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33054339	A	A	33054339	2	1	106	1	0	0	0	0	0	0	0	1	4484	1014	35	4		4	DEPDC7	11	33054339	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	3022009	33054339	101952177	1174	103869											
CSTF3	1479	broad.mit.edu	37	chr11	33120404	33120404	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggctataacctcccacccCcaatggcatctccattgagc	6	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33120404	T	T	33120404	1	4	106	0	1	0	0	0	0	0	0	0	4020	638	22	4		4	CSTF3	11	33120404	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	66065	33120404	101886112	1175	103870											
C11orf41	25758	broad.mit.edu	37	chr11	33565835	33565835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagtgtctttcccaggaCctcctccagagtgctgcggg	12	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33565835	A	A	33565835	3	1	106	1	0	0	0	0	1	0	0	0	1652	507	18	3	1837	3	C11orf41	11	33565835	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	445431	33565835	101440681	1176	103871											
PDHX	8050	broad.mit.edu	37	chr11	34937775	34937775	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggtggccccgcccctacCtgcgcgccgcatctccggga	12	20	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34937775	A	A	34937775	1	1	106	1	0	0	0	0	0	0	0	0	11761	695	24	2		2	PDHX	11	34937775	Translation_Start_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	1371940	34937775	100068741	1177	103872											
RAG1	5896	broad.mit.edu	37	chr11	36597537	36597537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacctgaagatgaaaccaGtatggcgatcatcatgccct	8	10	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36597537	T	T	36597537	3	4	106	1	0	0	0	0	1	0	0	0	13111	1029	36	3	2685	3	RAG1	11	36597537	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1659762	36597537	98408979	1178	103873											
EXT2	2132	broad.mit.edu	37	chr11	44228501	44228502	+	Missense_Mutation	DNP	GG	TT	TT													cctctgacgagctgcaatttGgttatgaggtaaggaggttt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44228502	TT	TT	44228501	3	4	106	1	0	0	0	0	1	0	0	0	5367	1348	47	2	1888	2	EXT2	11	44228501	Missense_Mutation	DNP	GG	TCGA-44-2656-01A-02D-0969-08	7630964	44228501	90778015	1179	103874											
SYT13	57586	broad.mit.edu	37	chr11	45277523	45277523	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaagggagaaacggtgaaCtgacctgttgtaggatgcag	16	5	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45277523	T	T	45277523	1	4	106	0	1	0	0	0	0	0	0	0	15588	580	20	4		4	SYT13	11	45277523	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1049022	45277523	89728993	1180	103875											
CRY2	1408	broad.mit.edu	37	chr11	45893463	45893463	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttggtcatgtcctccttGgacatttccaggcaaagtca	9	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45893463	T	T	45893463	1	4	106	0	1	0	0	0	0	0	0	0	3936	1363	47	2		2	CRY2	11	45893463	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	615940	45893463	89113053	1181	103876											
PEX16	9409	broad.mit.edu	37	chr11	45937218	45937218	+	Intron	DEL	C	-	-													tgtgtagctagcctgcgtcaCccccacccaggaccctctcc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45937218	-	-	45937218	6	5	106	0	1	1	0	1	0	0	0	0	11838	522	18	0		0	PEX16	11	45937218	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	43755	45937218	89069298	1182	103877											
PHF21A	51317	broad.mit.edu	37	chr11	45975093	45975093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacctgagggttctcctcCcgttttggtttgggtgcagc	12	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45975093	A	A	45975093	2	1	106	1	0	0	0	0	0	0	0	1	11928	610	22	2		2	PHF21A	11	45975093	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	37875	45975093	89031423	1183	103878											
FNBP4	23360	broad.mit.edu	37	chr11	47776187	47776187	+	Frame_Shift_Del	DEL	C	-	-													attgtcatcgtcatcactgtCagcataagcaccaagcaagc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47776187	-	-	47776187	7	5	106	1	0	1	0	1	0	0	0	0	6025	826	29	0	2770	0	FNBP4	11	47776187	Frame_Shift_Del	DEL	C	TCGA-44-2656-01A-02D-0969-08	1801094	47776187	87230329	1184	103879											
OR4A15	81328	broad.mit.edu	37	chr11	55135664	55135664	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcatagataccgtctattCtactgcatttgctcccaaaa	4	11	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135664	A	A	55135664	3	1	106	1	0	0	0	0	1	0	0	0	11134	913	32	3	307	3	OR4A15	11	55135664	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	7359477	55135664	79870852	1185	103880											
OR5D14	219436	broad.mit.edu	37	chr11	55563649	55563649	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttttcagcttcgccacCttcaatgagatgtgtacact	7	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563649	T	T	55563649	2	4	106	1	0	0	0	0	0	0	0	1	11249	668	24	4		4	OR5D14	11	55563649	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	427985	55563649	79442867	1186	103881											
SPRYD5	84767	broad.mit.edu	37	chr11	55655751	55655751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactccaggtatggactgacCatggggtatcatgatgttga	12	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55655751	A	A	55655751	1	1	106	0	1	0	0	0	0	0	0	0	15229	609	21	2		2	SPRYD5	11	55655751	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	92102	55655751	79350765	1187	103882											
OR5F1	338674	broad.mit.edu	37	chr11	55762106	55762106	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattttttctggtcatttatGagaaatatattttgtgtaaa	6	2	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55762106	T	T	55762106	1	4	106	0	1	0	0	0	0	0	0	0	11252	1305	45	3		3	OR5F1	11	55762106	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	106355	55762106	79244410	1188	103883											
OR5T2	219464	broad.mit.edu	37	chr11	56000765	56000765	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaatcaaatggaagaaatgGacgttcattagttggctgga	12	4	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56000765	C	C	56000765	1	2	106	0	1	0	0	0	0	0	0	0	11276	1189	41	4		4	OR5T2	11	56000765	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	238659	56000765	79005751	1189	103884											
OR8J1	219477	broad.mit.edu	37	chr11	56128272	56128272	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttactgtgataatgttcctCtgttagcattatcttgctct	6	8	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128272	A	A	56128272	3	1	106	1	0	0	0	0	1	0	0	0	11335	912	32	3	552	3	OR8J1	11	56128272	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	127507	56128272	78878244	1190	103885											
OR9G4	283189	broad.mit.edu	37	chr11	56510307	56510307	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaagagaataaccttcaTgtttgtggttgtatagtctg	10	5	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56510307	C	C	56510307	2	2	106	1	0	0	0	0	0	0	0	1	11345	1451	51	5		5	OR9G4	11	56510307	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	382035	56510307	78496209	1191	103886											
OR10W1	81341	broad.mit.edu	37	chr11	58034387	58034387	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctggaaccaaatacttgCctgataggctgtcccctcgt	11	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58034387	A	A	58034387	1	1	106	0	1	0	0	0	0	0	0	0	11015	754	26	3		3	OR10W1	11	58034387	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	1524080	58034387	76972129	1192	103887											
DTX4	23220	broad.mit.edu	37	chr11	58956149	58956149	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattttattagaattaaatActggtccattttgttccacg	6	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58956149	T	T	58956149	1	4	106	0	1	0	0	0	0	0	0	0	4837	406	14	5		5	DTX4	11	58956149	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	921762	58956149	76050367	1193	103888											
OR4D6	219983	broad.mit.edu	37	chr11	59224639	59224639	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcggaacaaatcagtccTggacatcgttttttcatcta	7	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59224639	C	C	59224639	3	2	106	1	0	0	0	0	1	0	0	0	11152	1580	55	5	208	5	OR4D6	11	59224639	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	268490	59224639	75781877	1194	103889											
GIF	2694	broad.mit.edu	37	chr11	59610487	59610487	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgactcttttctcccttcCagtcaggtcttactggaagg	8	13	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59610487	T	T	59610487	1	4	106	0	1	0	0	0	0	0	0	0	6440	609	21	4		4	GIF	11	59610487	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	385848	59610487	75396029	1195	103890											
MS4A12	54860	broad.mit.edu	37	chr11	60274425	60274425	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctctttgtccttcactctGatggtaccaggggaaattgc	10	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60274425	T	T	60274425	1	4	106	0	1	0	0	0	0	0	0	0	9950	1305	45	3		3	MS4A12	11	60274425	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	663938	60274425	74732091	1196	103891											
ZP1	22917	broad.mit.edu	37	chr11	60636728	60636728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgattacagaggctgccacGtgctggagaaggtaggggtt	16	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60636728	T	T	60636728	3	4	106	1	0	0	0	0	1	0	0	0	18344	1145	40	3	313	3	ZP1	11	60636728	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	362303	60636728	74369788	1197	103892											
VPS37C	55048	broad.mit.edu	37	chr11	60899828	60899828	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggactgggcgcaccgGgggtggtggacggggtggag	25	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60899828	A	A	60899828	3	1	106	1	0	0	0	0	1	0	0	0	17334	1232	43	4	539	4	VPS37C	11	60899828	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	263100	60899828	74106688	1198	103893											
CYBASC3	220002	broad.mit.edu	37	chr11	61121427	61121427	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttccagggcagtttgggCcccacccacgactggggcag	14	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61121427	G	G	61121427	2	3	106	1	0	0	0	0	0	0	0	1	4165	726	26	4		4	CYBASC3	11	61121427	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	221599	61121427	73885089	1199	103894											
C11orf9	745	broad.mit.edu	37	chr11	61539458	61539458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacactccccactcctccagGcccccccaccttgggacgcc	6	23	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61539458	T	T	61539458	1	4	106	0	1	0	0	0	0	0	0	0	1683	1218	42	3		3	C11orf9	11	61539458	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	418031	61539458	73467058	1200	103895											
GANAB	23193	broad.mit.edu	37	chr11	62398602	62398602	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacatccagcgaacatctgtCtgtggggtctccccagagcc	11	14	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62398602	A	A	62398602	3	1	106	1	0	0	0	0	1	0	0	0	6295	912	32	3	1844	3	GANAB	11	62398602	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	859144	62398602	72607914	1201	103896											
INTS5	80789	broad.mit.edu	37	chr11	62415826	62415826	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactagcagtgccaagttgcGcaggaaccgggccgtgaagg	15	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62415826	A	A	62415826	3	1	106	1	0	0	0	0	1	0	0	0	7851	1087	38	4	1337	4	INTS5	11	62415826	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	17224	62415826	72590690	1202	103897											
NXF1	10482	broad.mit.edu	37	chr11	62569274	62569274	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggggtggagcagaagaGttgatgatgatagatatctg	17	2	1	6			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62569274	A	A	62569274	2	1	106	1	0	0	0	0	0	0	0	1	10877	1020	36	4		4	NXF1	11	62569274	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	153448	62569274	72437242	1203	103898											
SLC22A6	9356	broad.mit.edu	37	chr11	62749428	62749428	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actggcccaggctgtagacaTagccaatcaaggtgcccacg	11	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62749428	A	A	62749428	3	1	106	1	0	0	0	0	1	0	0	0	14572	1406	49	5	1036	5	SLC22A6	11	62749428	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	180154	62749428	72257088	1204	103899											
SLC22A8	9376	broad.mit.edu	37	chr11	62767041	62767042	+	Intron	DNP	GG	CT	CT													cctctgaggtcctgagagggGgtggcaccttgaccaaggtc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	62767042	CT	CT	62767041	1	2	106	0	1	0	0	0	0	0	0	0	14574	1247	43	4		4	SLC22A8	11	62767041	Intron	DNP	GG	TCGA-44-2656-01A-02D-0969-08	17613	62767041	72239475	1205	103900											
NRXN2	9379	broad.mit.edu	37	chr11	64409970	64409970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgggaagcgccccccgccCccgggccaaccgggtggccg	15	20	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64409970	A	A	64409970	1	1	106	0	1	0	0	0	0	0	0	0	10761	638	22	2		2	NRXN2	11	64409970	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1642929	64409970	70596546	1206	103901											
MAP4K2	5871	broad.mit.edu	37	chr11	64566872	64566873	+	Intron	DNP	CC	AA	AA													acctctgggcaccaccttccCctcaaggcctgcccactcac							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	64566873	AA	AA	64566872	1	1	106	0	1	0	0	0	0	0	0	0	9352	638	22	2		2	MAP4K2	11	64566872	Intron	DNP	CC	TCGA-44-2656-01A-02D-0969-08	156902	64566872	70439644	1207	103902											
FAU	2197	broad.mit.edu	37	chr11	64888835	64888835	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacatgagggatgtaaaCaggaagaatcactctgaact	9	7	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64888835	G	G	64888835	1	3	106	0	1	0	0	0	0	0	0	0	5751	493	17	4		4	FAU	11	64888835	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	321963	64888835	70117681	1208	103903											
LTBP3	4054	broad.mit.edu	37	chr11	65315462	65315462	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagtagtcaggggggcccGgcacgcactctccgtggcca	16	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65315462	A	A	65315462	3	1	106	1	0	0	0	0	1	0	0	0	9162	1116	39	4	2204	4	LTBP3	11	65315462	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	426627	65315462	69691054	1209	103904											
PACS1	55690	broad.mit.edu	37	chr11	66001697	66001697	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagatctgttcagtcgctcGgagccaccagtgtcaggtaa	12	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66001697	A	A	66001697	2	1	106	1	0	0	0	0	0	0	0	1	11466	1103	39	4		4	PACS1	11	66001697	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	686235	66001697	69004819	1210	103905											
SPTBN2	6712	broad.mit.edu	37	chr11	66478225	66478225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccaggcgctctgcctccaTggcatggtccagcacctggg	12	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66478225	A	A	66478225	3	1	106	1	0	0	0	0	1	0	0	0	15238	1464	51	5	6387	5	SPTBN2	11	66478225	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	476528	66478225	68528291	1211	103906											
ADRBK1	156	broad.mit.edu	37	chr11	67049774	67049774	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctggacgagcatggccaCgtgcggatctcggacctggg	15	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67049774	G	G	67049774	3	3	106	1	0	0	0	0	1	0	0	0	343	535	19	4	1036	4	ADRBK1	11	67049774	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	571549	67049774	67956742	1212	103907											
IGHMBP2	3508	broad.mit.edu	37	chr11	68696885	68696885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctgcggtccttccacGctcagccaggagccccaggc	10	20	1	0	rs118002016	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68696885	T	T	68696885	1	4	106	0	1	0	0	0	0	0	0	0	7661	1102	38	3		3	IGHMBP2	11	68696885	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1647111	68696885	66309631	1213	103908											
ANO1	55107	broad.mit.edu	37	chr11	70002984	70002984	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgcacgcacatgcaccCacgctgacacacagagatgt	9	15	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70002984	G	G	70002984	1	3	106	0	1	0	0	0	0	0	0	0	695	609	21	4		4	ANO1	11	70002984	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1306099	70002984	65003532	1214	103909											
KRTAP5-8	57830	broad.mit.edu	37	chr11	71249015	71249015	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacacctgggcagggatatAaagggcccaggctcagggag	15	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71249015	T	T	71249015	1	4	106	0	1	0	0	0	0	0	0	0	8639	377	13	5		5	KRTAP5-8	11	71249015	5'Flank	SNP	A	TCGA-44-2656-01A-02D-0969-08	1246031	71249015	63757501	1215	103910											
FOLR2	2350	broad.mit.edu	37	chr11	71929838	71929838	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaacagggaggagaaagtCaggatggtgggagagggatt	18	3	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71929838	A	A	71929838	1	1	106	0	1	0	0	0	0	0	0	0	6040	841	29	3		3	FOLR2	11	71929838	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	680823	71929838	63076678	1216	103911											
PDE2A	5138	broad.mit.edu	37	chr11	72307581	72307581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggacaggctccatccaCcactccctcccatggtctcc	6	21	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72307581	A	A	72307581	1	1	106	0	1	0	0	0	0	0	0	0	11730	522	18	3		3	PDE2A	11	72307581	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	377743	72307581	62698935	1217	103912											
DNAJB13	374407	broad.mit.edu	37	chr11	73669580	73669580	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcatccttcttccctgcctAgaatctagacacacagagaa	6	13	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73669580	T	T	73669580	1	4	106	0	1	0	0	0	0	0	0	0	4658	435	15	5		5	DNAJB13	11	73669580	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1361999	73669580	61336936	1218	103913											
C2CD3	26005	broad.mit.edu	37	chr11	73768380	73768380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattgtgttggttatagtcCttgctctgactttgtgtctt	9	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73768380	A	A	73768380	1	1	106	0	1	0	0	0	0	0	0	0	2176	696	24	2		2	C2CD3	11	73768380	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	98800	73768380	61238136	1219	103914											
SLCO2B1	11309	broad.mit.edu	37	chr11	74899193	74899193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccttcagggcaaggactctCcctctaagcagagccctggg	11	14	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74899193	A	A	74899193	3	1	106	1	0	0	0	0	1	0	0	0	14841	855	30	3	1015	3	SLCO2B1	11	74899193	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1130813	74899193	60107323	1220	103915											
GDPD4	220032	broad.mit.edu	37	chr11	76990496	76990496	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgcagaaatcagtagcatCtgtgtcaaggatggggacaa	12	6	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76990496	T	T	76990496	1	4	106	0	1	0	0	0	0	0	0	0	6390	928	32	4		4	GDPD4	11	76990496	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2091303	76990496	58016020	1221	103916											
PAK1	5058	broad.mit.edu	37	chr11	77085292	77085292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatatgagtgcctcccagCtcaggctctgcctctaccac	7	16	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77085292	A	A	77085292	1	1	106	0	1	0	0	0	0	0	0	0	11493	812	28	3		3	PAK1	11	77085292	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	94796	77085292	57921224	1222	103917											
ODZ4	26011	broad.mit.edu	37	chr11	78468036	78468036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaggggctggaggcagCagtcagggtccatgcagtcc	17	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78468036	A	A	78468036	3	1	106	1	0	0	0	0	1	0	0	0	10932	710	25	3	5803	3	ODZ4	11	78468036	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1382744	78468036	56538480	1223	103918											
SYTL2	54843	broad.mit.edu	37	chr11	85459316	85459316	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actagccaagtcaactcaccTgctatctggggcctcttctt	7	14	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85459316	A	A	85459316	2	1	106	1	0	0	0	0	0	0	0	1	15602	1594	55	5		5	SYTL2	11	85459316	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	6991280	85459316	49547200	1224	103919											
GRM5	2915	broad.mit.edu	37	chr11	88386667	88386667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagattagtcattaaatgGctacctcaggccccatgatg	8	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88386667	A	A	88386667	1	1	106	0	1	0	0	0	0	0	0	0	6866	1218	42	4		4	GRM5	11	88386667	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2927351	88386667	46619849	1225	103920											
NOX4	50507	broad.mit.edu	37	chr11	89106819	89106819	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttattagtggaagaaaaaAaaatcaatgtcaacaggtca	7	6	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89106819	T	T	89106819	1	4	106	0	1	0	0	0	0	0	0	0	10653	29	1	5		5	NOX4	11	89106819	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	720152	89106819	45899697	1226	103921											
FOLH1B	219595	broad.mit.edu	37	chr11	89413711	89413711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtaggaatttagcagtgGtctttgaagaaaataataac	10	4	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89413711	T	T	89413711	1	4	106	0	1	0	0	0	0	0	0	0	6038	1276	44	3		3	FOLH1B	11	89413711	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	306892	89413711	45592805	1227	103922											
FAT3	120114	broad.mit.edu	37	chr11	92531039	92531039	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaagatcgaaccggtcctAggcatcatcaccatttgcaa	7	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92531039	T	T	92531039	2	4	106	1	0	0	0	0	0	0	0	1	5748	407	15	5		5	FAT3	11	92531039	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	3117328	92531039	42475477	1228	103923											
CEP57	9702	broad.mit.edu	37	chr11	95564074	95564075	+	Intron	INS	-	TGAG	TGAG													aaagcctagaatgtattattINStttcagttagcatgagagtt					rs147497264	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGAG	95564075	TGAG	TGAG	95564074	6	5	106	0	1	1	1	0	0	0	0	0	3286	1856	64	0		0	CEP57	11	95564074	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	3033035	95564074	39442442	1229	103924											
TRPC6	7225	broad.mit.edu	37	chr11	101359859	101359859	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaagtgacaaaatatttaAatttgactaaagaaaggttc	9	3	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101359859	T	T	101359859	1	4	106	0	1	0	0	0	0	0	0	0	16708	29	1	5		5	TRPC6	11	101359859	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	5795785	101359859	33646657	1230	103925											
KIAA1377	57562	broad.mit.edu	37	chr11	101786030	101786030	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggatgctggcggggagGcccggaacccggagcgcggt	20	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101786030	T	T	101786030	3	4	106	1	0	0	0	0	1	0	0	0	8297	1194	42	3	17	3	KIAA1377	11	101786030	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	426171	101786030	33220486	1231	103926											
GRIA4	2893	broad.mit.edu	37	chr11	105804494	105804494	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgtggacctacatgcgatCagcagagccatcagtattca	10	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105804494	A	A	105804494	4	1	106	1	0	0	0	0	0	1	0	0	6836	838	29	3	2180	3	GRIA4	11	105804494	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4018464	105804494	29202022	1232	103927											
GUCY1A2	2977	broad.mit.edu	37	chr11	106888445	106888445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatccgcgttctctcccCcgaaggcggtccccccttcc	8	20	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106888445	A	A	106888445	1	1	106	0	1	0	0	0	0	0	0	0	6958	638	22	2		2	GUCY1A2	11	106888445	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1083951	106888445	28118071	1233	103928											
CUL5	8065	broad.mit.edu	37	chr11	107904743	107904743	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttatctgtttacctattaAaaagtattactagttacatt	4	5	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107904743	G	G	107904743	1	3	106	0	1	0	0	0	0	0	0	0	4092	29	1	5		5	CUL5	11	107904743	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1016298	107904743	27101773	1234	103929											
C11orf65	160140	broad.mit.edu	37	chr11	108276128	108276128	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcccaaaatactacgtatTtccttagtaagtgtttcatc	4	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108276128	A	A	108276128	1	1	106	0	1	0	0	0	0	0	0	0	1667	1856	64	5		5	C11orf65	11	108276128	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	371385	108276128	26730388	1235	103930											
ZW10	9183	broad.mit.edu	37	chr11	113621820	113621820	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtagatgccttggataatCctttcaaggaagatcactta	9	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113621820	T	T	113621820	1	4	106	0	1	0	0	0	0	0	0	0	18376	870	30	4		4	ZW10	11	113621820	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5345692	113621820	21384696	1236	103931											
CEP164	22897	broad.mit.edu	37	chr11	117281624	117281624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaggtgagcctccctgGgggctggttggggtggaacg	19	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117281624	T	T	117281624	1	4	106	0	1	0	0	0	0	0	0	0	3279	1247	43	2		2	CEP164	11	117281624	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3659804	117281624	17724892	1237	103932											
DSCAML1	57453	broad.mit.edu	37	chr11	117387251	117387251	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggacactgcacaggtactCcccctcatccatgcccttct	7	17	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117387251	A	A	117387251	4	1	106	1	0	0	0	0	0	1	0	0	4809	864	30	3	4551	3	DSCAML1	11	117387251	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	105627	117387251	17619265	1238	103933											
FXYD6	53826	broad.mit.edu	37	chr11	117711951	117711951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggcttggccacagcaGggccaagggtctgtgcaggt	16	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117711951	T	T	117711951	1	4	106	0	1	0	0	0	0	0	0	0	6182	1015	35	2		2	FXYD6	11	117711951	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	324700	117711951	17294565	1239	103934											
TMPRSS13	84000	broad.mit.edu	37	chr11	117800087	117800087	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagatccatcttggtcccTggcttctcaggcatgtaggg	12	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117800087	A	A	117800087	1	1	106	0	1	0	0	0	0	0	0	0	16368	1595	55	5		5	TMPRSS13	11	117800087	5'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	88136	117800087	17206429	1240	103935											
ABCG4	64137	broad.mit.edu	37	chr11	119028819	119028819	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaacttaatggtacaagatTctctgtagacctggaggacc	9	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119028819	A	A	119028819	1	1	106	0	1	0	0	0	0	0	0	0	70	1798	62	5		5	ABCG4	11	119028819	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1228732	119028819	15977697	1241	103936											
CCDC153	283152	broad.mit.edu	37	chr11	119061008	119061008	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctggggcctcagagaacActagagactaggggctggtg	16	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119061008	G	G	119061008	1	3	106	0	1	0	0	0	0	0	0	0	2814	174	6	5		5	CCDC153	11	119061008	3'UTR	SNP	A	TCGA-44-2656-01A-02D-0969-08	32189	119061008	15945508	1242	103937											
CCDC153	283152	broad.mit.edu	37	chr11	119061646	119061646	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagacctcaaatgggctcGttccagactcccccagcatc	9	15	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119061646	A	A	119061646	1	1	106	0	1	0	0	0	0	0	0	0	2814	1160	40	4		4	CCDC153	11	119061646	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	638	119061646	15944870	1243	103938											
ASAM	79827	broad.mit.edu	37	chr11	122968762	122968762	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggatgttcccgtgggcaagTgcatgtggaggggttgcaag	19	6	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122968762	A	A	122968762	1	1	106	0	1	0	0	0	0	0	0	0	1013	1711	59	5		5	ASAM	11	122968762	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	3907116	122968762	12037754	1244	103939											
ASAM	79827	broad.mit.edu	37	chr11	123065571	123065571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctttcccggacgcagggCtgcgtttgcccacggccatc	12	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123065571	A	A	123065571	1	1	106	0	1	0	0	0	0	0	0	0	1013	812	28	3		3	ASAM	11	123065571	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	96809	123065571	11940945	1245	103940											
SCN3B	55800	broad.mit.edu	37	chr11	123524584	123524584	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgccctctcagattcttTcgaggaaaccctttgggacg	10	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123524584	C	C	123524584	1	2	106	0	1	0	0	0	0	0	0	0	14032	1798	62	5		5	SCN3B	11	123524584	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	459013	123524584	11481932	1246	103941											
OR4D5	219875	broad.mit.edu	37	chr11	123810656	123810656	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacttcattggaggcatcaaGatcttcctgctgactgtcat	8	11	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123810656	T	T	123810656	3	4	106	1	0	0	0	0	1	0	0	0	11151	933	33	3	335	3	OR4D5	11	123810656	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	286072	123810656	11195860	1247	103942											
VWA5A	4013	broad.mit.edu	37	chr11	124007382	124007382	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacccaagcctgatgtcaaGtgagaattcagttttccctt	7	11	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124007382	C	C	124007382	5	2	106	1	0	0	0	0	0	0	1	0	17369	1043	36	4	1676	4	VWA5A	11	124007382	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	196726	124007382	10999134	1248	103943											
OR8B12	219858	broad.mit.edu	37	chr11	124413479	124413479	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaacaggaagaagaggggGatccgcagtcccggctggtg	17	8	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124413479	T	T	124413479	2	4	106	1	0	0	0	0	0	0	0	1	11320	1164	41	3		3	OR8B12	11	124413479	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	406097	124413479	10593037	1249	103944											
PKNOX2	63876	broad.mit.edu	37	chr11	125267645	125267645	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttttggccaagatcaagTgtaggaagcatgagctacgg	13	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125267645	G	G	125267645	1	3	106	0	1	0	0	0	0	0	0	0	12078	1711	59	5		5	PKNOX2	11	125267645	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	854166	125267645	9738871	1250	103945											
PKNOX2	63876	broad.mit.edu	37	chr11	125299921	125299921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagcaacccagatcctgCccccaaagccaagaagatca	7	16	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299921	A	A	125299921	3	1	106	1	0	0	0	0	1	0	0	0	12078	739	26	3	1110	3	PKNOX2	11	125299921	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	32276	125299921	9706595	1251	103946											
KIRREL3	84623	broad.mit.edu	37	chr11	126306857	126306857	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatggtctccaccgtataGcgccccgatgtgcccgactc	10	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126306857	A	A	126306857	2	1	106	1	0	0	0	0	0	0	0	1	8397	958	34	4		4	KIRREL3	11	126306857	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1006936	126306857	8699659	1252	103947											
ST14	6768	broad.mit.edu	37	chr11	130059932	130059932	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgctggccgggcacctccCtttagataataaggaagcag	12	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130059932	T	T	130059932	1	4	106	0	1	0	0	0	0	0	0	0	15329	696	24	4		4	ST14	11	130059932	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3753075	130059932	4946584	1253	103948											
ST14	6768	broad.mit.edu	37	chr11	130060321	130060321	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagccctgcccccacaCgtgccctccttcttgtctcc	6	22	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130060321	G	G	130060321	1	3	106	0	1	0	0	0	0	0	0	0	15329	551	19	4		4	ST14	11	130060321	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	389	130060321	4946195	1254	103949											
NTM	50863	broad.mit.edu	37	chr11	131240963	131240963	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagaatattgatttgatTctggctgctaccggaatggg	13	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131240963	A	A	131240963	1	1	106	0	1	0	0	0	0	0	0	0	10794	1798	62	5		5	NTM	11	131240963	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1180642	131240963	3765553	1255	103950											
SLC6A13	6540	broad.mit.edu	37	chr12	330508	330508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgcgaagcctcccagccCctctggctgctttcctgccc	8	20	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	330508	A	A	330508	1	1	106	0	1	0	0	0	0	0	0	0	14790	638	22	2		2	SLC6A13	12	330508	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08		330508	133521387	1256	103951											
WNK1	65125	broad.mit.edu	37	chr12	990233	990233	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggacaacaatgataaaggaGaaagaaacaggctcccctgg	11	8	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	990233	A	A	990233	1	1	106	0	1	0	0	0	0	0	0	0	17504	957	33	4		4	WNK1	12	990233	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	659725	990233	132861662	1257	103952											
ADIPOR2	79602	broad.mit.edu	37	chr12	1866487	1866487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcagggaagagaagtctGtggtttgttgcccttgccaa	12	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1866487	T	T	1866487	1	4	106	0	1	0	0	0	0	0	0	0	319	1392	48	3		3	ADIPOR2	12	1866487	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	876254	1866487	131985408	1258	103953											
CACNA2D4	93589	broad.mit.edu	37	chr12	1995277	1995277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcaaagtccaggcccagCaaagacactcatgcaggtca	10	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1995277	A	A	1995277	1	1	106	0	1	0	0	0	0	0	0	0	2577	725	25	3		3	CACNA2D4	12	1995277	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	128790	1995277	131856618	1259	103954											
CACNA1C	775	broad.mit.edu	37	chr12	2706206	2706206	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcctgaggctagccccGcctcaggatgtctgtgtgtg	14	12	2	1	rs144915499	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2706206	A	A	2706206	1	1	106	0	1	0	0	0	0	0	0	0	2566	1102	38	4		4	CACNA1C	12	2706206	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	710929	2706206	131145689	1260	103955											
CACNA1C	775	broad.mit.edu	37	chr12	2711003	2711003	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccactcacactggtgttccTttgtccctccctgcagatga	8	15	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2711003	A	A	2711003	1	1	106	0	1	0	0	0	0	0	0	0	2566	1624	56	5		5	CACNA1C	12	2711003	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	4797	2711003	131140892	1261	103956											
DYRK4	8798	broad.mit.edu	37	chr12	4722693	4722693	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagcagatgagatcaccaAagagactacagagaaaacaa	8	7	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4722693	G	G	4722693	3	3	106	1	0	0	0	0	1	0	0	0	4898	14	1	5	1379	5	DYRK4	12	4722693	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	2011690	4722693	129129202	1262	103957											
VWF	7450	broad.mit.edu	37	chr12	6135206	6135206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcccacacaggccacacaCtttctccttgagagacaagt	6	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6135206	A	A	6135206	3	1	106	1	0	0	0	0	1	0	0	0	17373	565	20	3	5587	3	VWF	12	6135206	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1412513	6135206	127716689	1263	103958											
USP5	8078	broad.mit.edu	37	chr12	6975138	6975138	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccttttctgttttccccActtccccagatgggtgatct	6	14	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6975138	T	T	6975138	1	4	106	0	1	0	0	0	0	0	0	0	17208	174	6	5		5	USP5	12	6975138	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	839932	6975138	126876757	1264	103959											
CD163	9332	broad.mit.edu	37	chr12	7636091	7636092	+	Missense_Mutation	DNP	CC	AA	AA													tgagccatatcggtccagtcCcctgaccaaactctgcttct							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7636092	AA	AA	7636091	3	1	106	1	0	0	0	0	1	0	0	0	2997	623	22	2	530	2	CD163	12	7636091	Missense_Mutation	DNP	CC	TCGA-44-2656-01A-02D-0969-08	660953	7636091	126215804	1265	103960											
SLCO1C1	53919	broad.mit.edu	37	chr12	20886042	20886042	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtctcctaccaagggtaTgttccctcattaaatagttt	6	10	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20886042	A	A	20886042	1	1	106	0	1	0	0	0	0	0	0	0	14839	1479	51	5		5	SLCO1C1	12	20886042	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	13249951	20886042	112965853	1266	103961											
SLCO1A2	6579	broad.mit.edu	37	chr12	21450292	21450292	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acacccgccatcacactgttCgtgggggggaaagtgtgcta	13	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21450292	G	G	21450292	1	3	106	0	1	0	0	0	0	0	0	0	14836	899	31	4		4	SLCO1A2	12	21450292	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	564250	21450292	112401603	1267	103962											
ABCC9	10060	broad.mit.edu	37	chr12	22089557	22089557	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaattttgtagtacacCatcgttgatattatatgaag	9	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22089557	G	G	22089557	3	3	106	1	0	0	0	0	1	0	0	0	59	594	21	4	4891	4	ABCC9	12	22089557	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	639265	22089557	111762338	1268	103963											
SOX5	6660	broad.mit.edu	37	chr12	23999036	23999036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtactagacaaggactcgCcactctgtcgcccaccttct	7	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23999036	A	A	23999036	3	1	106	1	0	0	0	0	1	0	0	0	15068	739	26	3	1991	3	SOX5	12	23999036	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1909479	23999036	109852859	1269	103964											
IPO8	10526	broad.mit.edu	37	chr12	30783888	30783888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttcaatcttcttctttGcctctagcatttttcaaaag	5	9	6	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30783888	T	T	30783888	3	4	106	1	0	0	0	0	1	0	0	0	7868	1319	46	3	97	3	IPO8	12	30783888	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	6784852	30783888	103068007	1270	103965											
IPO8	10526	broad.mit.edu	37	chr12	30837234	30837234	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatatatagcaccacataCctcactaaatctggagaccg	5	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30837234	A	A	30837234	5	1	106	1	0	0	0	0	0	0	1	0	7868	521	18	3	2881	3	IPO8	12	30837234	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	53346	30837234	103014661	1271	103966											
BICD1	636	broad.mit.edu	37	chr12	32260458	32260458	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtacgacagcctcaaacagGagctggagcagctcaaagag	12	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32260458	C	C	32260458	3	2	106	1	0	0	0	0	1	0	0	0	1434	1175	41	4	195	4	BICD1	12	32260458	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1423224	32260458	101591437	1272	103967											
YARS2	51067	broad.mit.edu	37	chr12	32908775	32908775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggtaccagaccaccggcCccaggaaaaggaccgcaaga	12	13	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32908775	A	A	32908775	3	1	106	1	0	0	0	0	1	0	0	0	17595	623	22	2	1419	2	YARS2	12	32908775	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	648317	32908775	100943120	1273	103968											
CNTN1	1272	broad.mit.edu	37	chr12	41419239	41419239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctacctagctacctgagCacatttttcaatatccttta	3	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41419239	A	A	41419239	1	1	106	0	1	0	0	0	0	0	0	0	3672	725	25	3		3	CNTN1	12	41419239	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	8510464	41419239	92432656	1274	103969											
PDZRN4	29951	broad.mit.edu	37	chr12	41587845	41587845	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaataatatttaaattttgCttacatctttcttctgctaa	2	7	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41587845	T	T	41587845	1	4	106	0	1	0	0	0	0	0	0	0	11804	812	28	4		4	PDZRN4	12	41587845	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	168606	41587845	92264050	1275	103970											
ANO6	196527	broad.mit.edu	37	chr12	45810526	45810526	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttgtggcctcttttccaCtggcccctctgttggctctc	8	14	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45810526	T	T	45810526	2	4	106	1	0	0	0	0	0	0	0	1	701	564	20	4		4	ANO6	12	45810526	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	4222681	45810526	88041369	1276	103971											
SFRS2IP	9169	broad.mit.edu	37	chr12	46320773	46320773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgggacctggatttttctCctggggaagaatctttcact	10	9	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46320773	A	A	46320773	3	1	106	1	0	0	0	0	1	0	0	0	14290	855	30	3	1700	3	SFRS2IP	12	46320773	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	510247	46320773	87531122	1277	103972											
RAPGEF3	10411	broad.mit.edu	37	chr12	48143570	48143570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccttccagataatgtacCacgaagtgcccttgtccccc	6	16	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48143570	A	A	48143570	3	1	106	1	0	0	0	0	1	0	0	0	13153	595	21	2	2003	2	RAPGEF3	12	48143570	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1822797	48143570	85708325	1278	103973											
HDAC7	51564	broad.mit.edu	37	chr12	48196167	48196167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccactccaagcttgagcaCgccaaagcctgggacctcca	9	16	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48196167	A	A	48196167	1	1	106	0	1	0	0	0	0	0	0	0	7079	551	19	3		3	HDAC7	12	48196167	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	52597	48196167	85655728	1279	103974											
ADCY6	112	broad.mit.edu	37	chr12	49170251	49170251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtggttggccagggtcaCatcattggaccacacatcga	11	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49170251	A	A	49170251	3	1	106	1	0	0	0	0	1	0	0	0	298	478	17	3	2075	3	ADCY6	12	49170251	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	974084	49170251	84681644	1280	103975											
ADCY6	112	broad.mit.edu	37	chr12	49170409	49170409	+	Intron	DEL	C	-	-													gatcagctcctggcagtcttCccctcccccagcccacaacc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49170409	-	-	49170409	6	5	106	0	1	1	0	1	0	0	0	0	298	870	30	0		0	ADCY6	12	49170409	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	158	49170409	84681486	1281	103976											
KCNH3	23416	broad.mit.edu	37	chr12	49937035	49937035	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatattctttcctctctgccTggacctgccctgcctcactc	5	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49937035	A	A	49937035	1	1	106	0	1	0	0	0	0	0	0	0	8103	1595	55	5		5	KCNH3	12	49937035	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	766626	49937035	83914860	1282	103977											
AQP2	359	broad.mit.edu	37	chr12	50344589	50344589	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggccctgagacagctgGgccagccccgcagggctctg	14	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50344589	T	T	50344589	1	4	106	0	1	0	0	0	0	0	0	0	828	1247	43	2		2	AQP2	12	50344589	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	407554	50344589	83507306	1283	103978											
LETMD1	25875	broad.mit.edu	37	chr12	51442900	51442900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagacaaaagcgattaatgGgaaataccatcgtttcttgg	9	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51442900	T	T	51442900	3	4	106	1	0	0	0	0	1	0	0	0	8808	1232	43	2	212	2	LETMD1	12	51442900	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1098311	51442900	82408995	1284	103979											
BIN2	51411	broad.mit.edu	37	chr12	51689596	51689596	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccttgacagtcccttcaCcacaaagactttattggaat	5	12	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51689596	G	G	51689596	3	3	106	1	0	0	0	0	1	0	0	0	1439	507	18	4	972	4	BIN2	12	51689596	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	246696	51689596	82162299	1285	103980											
KRT6A	3853	broad.mit.edu	37	chr12	52885477	52885477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcctgcagcagggtcCactttgtttccagaaccttg	9	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52885477	A	A	52885477	3	1	106	1	0	0	0	0	1	0	0	0	8551	595	21	2	1142	2	KRT6A	12	52885477	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1195881	52885477	80966418	1286	103981											
KRT5	3852	broad.mit.edu	37	chr12	52910579	52910579	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggccagcttgttcctggcAtccttgagggccagctcccc	11	16	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52910579	G	G	52910579	2	3	106	1	0	0	0	0	0	0	0	1	8550	214	8	5		5	KRT5	12	52910579	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	25102	52910579	80941316	1287	103982											
EIF4B	1975	broad.mit.edu	37	chr12	53400188	53400188	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgccccctcccagcttcgCgtctcctagctcgacgcgcc	8	23	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53400188	A	A	53400188	1	1	106	0	1	0	0	0	0	0	0	0	5069	783	27	3		3	EIF4B	12	53400188	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	489609	53400188	80451707	1288	103983											
HOXC8	3224	broad.mit.edu	37	chr12	54403672	54403672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaagttgggaaggctccgCtggggcggggcagggagggg	23	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54403672	A	A	54403672	1	1	106	0	1	0	0	0	0	0	0	0	7383	812	28	3		3	HOXC8	12	54403672	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1003484	54403672	79448223	1289	103984											
ZNF385A	25946	broad.mit.edu	37	chr12	54767848	54767848	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgccaggctccctgcctctGgtcttggcagcctcaatgcc	10	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54767848	C	C	54767848	2	2	106	1	0	0	0	0	0	0	0	1	18002	1335	47	4		4	ZNF385A	12	54767848	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	364176	54767848	79084047	1290	103985											
KIAA0748	9840	broad.mit.edu	37	chr12	55356793	55356793	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggtggtggccggtctcGggggcatgtgtacagacaca	19	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55356793	A	A	55356793	4	1	106	1	0	0	0	0	0	1	0	0	8260	1124	39	4	684	4	KIAA0748	12	55356793	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	588945	55356793	78495102	1291	103986											
OR6C1	390321	broad.mit.edu	37	chr12	55714510	55714510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcactgggaacctgaccCttatcacaattaccctgctg	7	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55714510	A	A	55714510	3	1	106	1	0	0	0	0	1	0	0	0	11284	681	24	2	129	2	OR6C1	12	55714510	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	357717	55714510	78137385	1292	103987											
TIMELESS	8914	broad.mit.edu	37	chr12	56811918	56811918	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggctgtcgcactattacCctctggggatgccaggcccg	13	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56811918	A	A	56811918	4	1	106	1	0	0	0	0	0	1	0	0	16027	637	22	2	184	2	TIMELESS	12	56811918	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1097408	56811918	77039977	1293	103988											
RDH16	8608	broad.mit.edu	37	chr12	57345827	57345827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcttcatagagccttggCcgggcttggagagacccagt	13	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57345827	A	A	57345827	3	1	106	1	0	0	0	0	1	0	0	0	13302	739	26	3	17	3	RDH16	12	57345827	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	533909	57345827	76506068	1294	103989											
RDH16	8608	broad.mit.edu	37	chr12	57351414	57351414	+	Translation_Start_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgactgcctttctgcaacaTatttattctggccccacctc	5	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57351414	C	C	57351414	1	2	106	1	0	0	0	0	0	0	0	0	13302	1421	49	5		5	RDH16	12	57351414	Translation_Start_Site	SNP	T	TCGA-44-2656-01A-02D-0969-08	5587	57351414	76500481	1295	103990											
R3HDM2	22864	broad.mit.edu	37	chr12	57661935	57661935	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaaatcaataagtgaaaagGagaatgaactccctcatatt	6	7	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57661935	A	A	57661935	1	1	106	0	1	0	0	0	0	0	0	0	12996	1189	41	4		4	R3HDM2	12	57661935	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	310521	57661935	76189960	1296	103991											
INHBE	83729	broad.mit.edu	37	chr12	57850768	57850768	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatatgactcacttgacccCtatgggacccaaatgggcac	8	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57850768	A	A	57850768	1	1	106	0	1	0	0	0	0	0	0	0	7814	696	24	2		2	INHBE	12	57850768	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	188833	57850768	76001127	1297	103992											
SRGAP1	57522	broad.mit.edu	37	chr12	64480811	64480811	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatatatgactacaaggtagGaaaatattttatcataactt	5	4	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64480811	T	T	64480811	1	4	106	0	1	0	0	0	0	0	0	0	15263	1189	41	3		3	SRGAP1	12	64480811	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	6630043	64480811	69371084	1298	103993											
RAB21	23011	broad.mit.edu	37	chr12	72176542	72176542	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacttttcaaagaattggttCtttttaaactattgactatt	4	5	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72176542	T	T	72176542	1	4	106	0	1	0	0	0	0	0	0	0	13016	928	32	4		4	RAB21	12	72176542	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	7695731	72176542	61675353	1299	103994											
CAPS2	84698	broad.mit.edu	37	chr12	75737780	75737780	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattttaattgccagaattTatttctctgtatgtaaagtg	6	4	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75737780	C	C	75737780	1	2	106	0	1	0	0	0	0	0	0	0	2664	1769	61	5		5	CAPS2	12	75737780	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	3561238	75737780	58114115	1300	103995											
PHLDA1	22822	broad.mit.edu	37	chr12	76424788	76424788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacatgtacttgcccttgCgctccacacagtccacggtc	8	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76424788	A	A	76424788	3	1	106	1	0	0	0	0	1	0	0	0	11943	768	27	3	475	3	PHLDA1	12	76424788	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	687008	76424788	57427107	1301	103996											
SLC6A15	55117	broad.mit.edu	37	chr12	85266251	85266251	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaggacttataatgcccAggagcttctccgggcatttt	10	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85266251	T	T	85266251	1	4	106	0	1	0	0	0	0	0	0	0	14792	203	7	5		5	SLC6A15	12	85266251	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	8841463	85266251	48585644	1302	103997											
LRRIQ1	84125	broad.mit.edu	37	chr12	85438657	85438657	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctctcttacacaagattGatacttcactgattttaagt	4	8	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85438657	A	A	85438657	1	1	106	0	1	0	0	0	0	0	0	0	9116	1305	45	4		4	LRRIQ1	12	85438657	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	172406	85438657	48413238	1303	103998											
CEP290	80184	broad.mit.edu	37	chr12	88535088	88535088	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttatattaggtggcatcttGaattctttcactgtgctcca	7	8	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88535088	C	C	88535088	1	2	106	0	1	0	0	0	0	0	0	0	3283	1305	45	4		4	CEP290	12	88535088	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	3096431	88535088	45316807	1304	103999											
EPYC	1833	broad.mit.edu	37	chr12	91358003	91358003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttttgctgagattaataGggtttccatccaatcgaatg	10	6	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91358003	T	T	91358003	3	4	106	1	0	0	0	0	1	0	0	0	5243	1000	35	2	73	2	EPYC	12	91358003	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2822915	91358003	42493892	1305	104000											
C12orf63	374467	broad.mit.edu	37	chr12	97073311	97073311	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattctctgaattataaacTtgctggctcttaccttggct	6	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97073311	A	A	97073311	1	1	106	0	1	0	0	0	0	0	0	0	1719	1624	56	5		5	C12orf63	12	97073311	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	5715308	97073311	36778584	1306	104001											
ANO4	121601	broad.mit.edu	37	chr12	101430707	101430707	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtgaatttcccagcccttGatcccaatttcacggcagca	7	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101430707	T	T	101430707	1	4	106	0	1	0	0	0	0	0	0	0	699	1305	45	3		3	ANO4	12	101430707	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4357396	101430707	32421188	1307	104002											
SLC5A8	160728	broad.mit.edu	37	chr12	101576500	101576500	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaggtccttcctctgtAgcttcagtggaaaagaaatt	9	8	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101576500	G	G	101576500	1	3	106	0	1	0	0	0	0	0	0	0	14785	435	15	5		5	SLC5A8	12	101576500	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	145793	101576500	32275395	1308	104003											
ARL1	400	broad.mit.edu	37	chr12	101801657	101801657	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtagataccgtggaggccAgaagagacgaataattcaaa	11	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101801657	G	G	101801657	1	3	106	0	1	0	0	0	0	0	0	0	927	203	7	5		5	ARL1	12	101801657	5'Flank	SNP	A	TCGA-44-2656-01A-02D-0969-08	225157	101801657	32050238	1309	104004											
MYBPC1	4604	broad.mit.edu	37	chr12	102020706	102020706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttgggataatttctacCcttttccctgcttttaaata	6	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102020706	A	A	102020706	1	1	106	0	1	0	0	0	0	0	0	0	10105	638	22	2		2	MYBPC1	12	102020706	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	219049	102020706	31831189	1310	104005											
STAB2	55576	broad.mit.edu	37	chr12	104126791	104126792	+	Frame_Shift_Ins	INS	-	T	T													cctgtgtttcaggactcaggINStttgctgagtgtcatcaccg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104126792	T	T	104126791	7	5	106	1	0	1	1	0	0	0	0	0	15356	1261	44	0	5493	0	STAB2	12	104126791	Frame_Shift_Ins	INS	-	TCGA-44-2656-01A-02D-0969-08	2106085	104126791	29725104	1311	104006											
RFX4	5992	broad.mit.edu	37	chr12	107078752	107078752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatctcttccctcctcgCaaaagcccttcccataattc	3	18	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107078752	A	A	107078752	1	1	106	0	1	0	0	0	0	0	0	0	13373	725	25	3		3	RFX4	12	107078752	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2951961	107078752	26773143	1312	104007											
ACACB	32	broad.mit.edu	37	chr12	109577158	109577158	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttaggagagaaatcacTtgattatgtaaatcctaaaa	6	5	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109577158	A	A	109577158	1	1	106	0	1	0	0	0	0	0	0	0	107	1624	56	5		5	ACACB	12	109577158	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2498406	109577158	24274737	1313	104008											
CCDC63	160762	broad.mit.edu	37	chr12	111336809	111336809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaggtcagcaagaccttgGatctattgaagaactcagtg	13	7	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111336809	T	T	111336809	3	4	106	1	0	0	0	0	1	0	0	0	2862	1174	41	3	1256	3	CCDC63	12	111336809	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1759651	111336809	22515086	1314	104009											
ATXN2	6311	broad.mit.edu	37	chr12	111957944	111957944	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagtttatgtatctgtcaTaatcaactactaagaaagtt	5	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111957944	C	C	111957944	1	2	106	0	1	0	0	0	0	0	0	0	1215	1421	49	5		5	ATXN2	12	111957944	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	621135	111957944	21893951	1315	104010											
C12orf51	283450	broad.mit.edu	37	chr12	112717328	112717328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatttccagattaggaaaaCagaataagaagtaatagcta	8	4	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112717328	A	A	112717328	1	1	106	0	1	0	0	0	0	0	0	0	1709	493	17	3		3	C12orf51	12	112717328	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	759384	112717328	21134567	1316	104011											
SDS	10993	broad.mit.edu	37	chr12	113836439	113836439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacaggggagataggaggGggtgaggcacagggggcacc	21	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113836439	T	T	113836439	1	4	106	0	1	0	0	0	0	0	0	0	14088	1247	43	2		2	SDS	12	113836439	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1119111	113836439	20015456	1317	104012											
TBX3	6926	broad.mit.edu	37	chr12	115114148	115114148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgtccctacagtggaggCggctggagaagaagcctggg	17	9	0	2	rs140580685	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115114148	A	A	115114148	3	1	106	1	0	0	0	0	1	0	0	0	15781	768	27	3	1174	3	TBX3	12	115114148	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1277709	115114148	18737747	1318	104013											
NOS1	4842	broad.mit.edu	37	chr12	117718572	117718572	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcccccagggtggagccGtcaggctgcttgtagccagc	16	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117718572	A	A	117718572	2	1	106	1	0	0	0	0	0	0	0	1	10636	1136	40	4		4	NOS1	12	117718572	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	2604424	117718572	16133323	1319	104014											
CCDC60	160777	broad.mit.edu	37	chr12	119957762	119957762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcccaggaaatgtggcCgaggaatctgtattcatagc	11	9	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119957762	A	A	119957762	1	1	106	0	1	0	0	0	0	0	0	0	2859	667	23	1		1	CCDC60	12	119957762	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2239190	119957762	13894133	1320	104015											
CIT	11113	broad.mit.edu	37	chr12	120263085	120263085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagtcacagtccaggcCgtaggtgccttttccatccc	8	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120263085	A	A	120263085	3	1	106	1	0	0	0	0	1	0	0	0	3469	652	23	1	5402	1	CIT	12	120263085	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	305323	120263085	13588810	1321	104016											
CABP1	9478	broad.mit.edu	37	chr12	121088332	121088332	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctggaggaagaacggcaCagacggagggaggctggggt	20	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121088332	T	T	121088332	1	4	106	0	1	0	0	0	0	0	0	0	2557	493	17	4		4	CABP1	12	121088332	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	825247	121088332	12763563	1322	104017											
CABP1	9478	broad.mit.edu	37	chr12	121099132	121099132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccctaattttccaacccCcagccctttcatcctcttat	2	19	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121099132	A	A	121099132	1	1	106	0	1	0	0	0	0	0	0	0	2557	638	22	2		2	CABP1	12	121099132	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	10800	121099132	12752763	1323	104018											
MLXIP	22877	broad.mit.edu	37	chr12	122617836	122617836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacttggcagtgtgcagcGctagaaaggaattgtctgac	14	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122617836	T	T	122617836	1	4	106	0	1	0	0	0	0	0	0	0	9729	1102	38	3		3	MLXIP	12	122617836	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1518704	122617836	11234059	1324	104019											
RILPL1	353116	broad.mit.edu	37	chr12	124007939	124007939	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagggctttgggaatcagCcagcaccgcatcagcgtcca	11	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124007939	G	G	124007939	1	3	106	0	1	0	0	0	0	0	0	0	13470	754	26	4		4	RILPL1	12	124007939	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1390103	124007939	9843956	1325	104020											
DNAH10	196385	broad.mit.edu	37	chr12	124325764	124325764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatctcggctcaccggttgCcattgcttgcatcgtggcag	12	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124325764	A	A	124325764	1	1	106	0	1	0	0	0	0	0	0	0	4638	754	26	3		3	DNAH10	12	124325764	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	317825	124325764	9526131	1326	104021											
ZNF268	10795	broad.mit.edu	37	chr12	133779409	133779410	+	Nonsense_Mutation	DNP	GA	TT	TT													gaccagcttgtttcacaccaGaaaactcattcaggacagaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	133779410	TT	TT	133779409	4	4	106	1	0	0	0	0	0	1	0	0	17933	933	33	3		3	ZNF268	12	133779409	Nonsense_Mutation	DNP	GA	TCGA-44-2656-01A-02D-0969-08	9453645	133779409	72486	1327	104022											
SPATA13	221178	broad.mit.edu	37	chr13	24697588	24697588	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatgcattccatctgatcGttatagatctttttcttcag	5	9	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24697588	A	A	24697588	1	1	106	0	1	0	0	0	0	0	0	0	15116	1160	40	4		4	SPATA13	13	24697588	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08		24697588	90472290	1328	104023											
RNF17	56163	broad.mit.edu	37	chr13	25356050	25356050	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagaagttgtggagaaacaGtttgaccaacttttggcttt	10	5	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25356050	A	A	25356050	2	1	106	1	0	0	0	0	0	0	0	1	13572	1020	36	4		4	RNF17	13	25356050	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	658462	25356050	89813828	1329	104024											
FAM123A	219287	broad.mit.edu	37	chr13	25745640	25745640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaagtccatgtctgccgCgagggtcccggtcccggccc	13	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25745640	A	A	25745640	3	1	106	1	0	0	0	0	1	0	0	0	5468	768	27	3	1901	3	FAM123A	13	25745640	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	389590	25745640	89424238	1330	104025											
NUPL1	9818	broad.mit.edu	37	chr13	25881957	25881957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataagcaacccttctgtgGggctcaattttggaaatctt	8	8	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25881957	T	T	25881957	3	4	106	1	0	0	0	0	1	0	0	0	10869	1232	43	2	127	2	NUPL1	13	25881957	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	136317	25881957	89287921	1331	104026											
FLT3	2322	broad.mit.edu	37	chr13	28602308	28602308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgattttcgtggaagtGggttacctgacagtgtgcac	15	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28602308	T	T	28602308	1	4	106	0	1	0	0	0	0	0	0	0	6000	1363	47	2		2	FLT3	13	28602308	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2720351	28602308	86567570	1332	104027											
KATNAL1	84056	broad.mit.edu	37	chr13	30801606	30801606	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcgcaaagcttcatcaaTgtcccacgggaaattagtag	8	10	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30801606	C	C	30801606	3	2	106	1	0	0	0	0	1	0	0	0	8055	1464	51	5	394	5	KATNAL1	13	30801606	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	2199298	30801606	84368272	1333	104028											
HSPH1	10808	broad.mit.edu	37	chr13	31713001	31713001	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttttggccgttcttcagCttcctgaaaccgaactttaa	6	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31713001	T	T	31713001	3	4	106	1	0	0	0	0	1	0	0	0	7501	797	28	4	463	4	HSPH1	13	31713001	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	911395	31713001	83456877	1334	104029											
FRY	10129	broad.mit.edu	37	chr13	32811626	32811626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggcaacaccgcaactgccgAacggagccggcatcaacgaa	11	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32811626	T	T	32811626	3	4	106	1	0	0	0	0	1	0	0	0	6123	246	9	5	6095	5	FRY	13	32811626	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1098625	32811626	82358252	1335	104030											
STARD13	90627	broad.mit.edu	37	chr13	33703975	33703975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcaccaggccacctgtcCgcccagaccccttatgcctc	7	19	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33703975	A	A	33703975	3	1	106	1	0	0	0	0	1	0	0	0	15374	652	23	1	2542	1	STARD13	13	33703975	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	892349	33703975	81465903	1336	104031											
STARD13	90627	broad.mit.edu	37	chr13	33704350	33704350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtagaggtcgtccacaCgagaccacctgcgactggtt	13	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33704350	A	A	33704350	3	1	106	1	0	0	0	0	1	0	0	0	15374	536	19	3	2917	3	STARD13	13	33704350	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	375	33704350	81465528	1337	104032											
RFC3	5983	broad.mit.edu	37	chr13	34404943	34404943	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttgcagagaagtcttgtAgaaatctcagaaaagccctg	10	8	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34404943	T	T	34404943	4	4	106	1	0	0	0	0	0	1	0	0	13354	412	15	5	683	5	RFC3	13	34404943	Nonsense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	700593	34404943	80764935	1338	104033											
NBEA	26960	broad.mit.edu	37	chr13	35733541	35733541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgatatggatttatcacCggagactttagtaggtggag	13	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35733541	A	A	35733541	3	1	106	1	0	0	0	0	1	0	0	0	10281	652	23	1	3319	1	NBEA	13	35733541	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1328598	35733541	79436337	1339	104034											
DCLK1	9201	broad.mit.edu	37	chr13	36410405	36410405	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatgtcattctctgtacaGtgaggcaactgcctccccac	7	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36410405	A	A	36410405	1	1	106	0	1	0	0	0	0	0	0	0	4324	1044	36	4		4	DCLK1	13	36410405	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	676864	36410405	78759473	1340	104035											
POSTN	10631	broad.mit.edu	37	chr13	38154929	38154929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagtttccggatcggccctTctgagaggttgcctggtgtc	13	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38154929	A	A	38154929	1	1	106	0	1	0	0	0	0	0	0	0	12354	1798	62	5		5	POSTN	13	38154929	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1744524	38154929	77014949	1341	104036											
ELF1	1997	broad.mit.edu	37	chr13	41507884	41507884	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttccattgcaaatggtctGaacattgctagtaaggacct	10	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41507884	C	C	41507884	3	2	106	1	0	0	0	0	1	0	0	0	5095	1299	45	4	326	4	ELF1	13	41507884	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3352955	41507884	73661994	1342	104037											
PCDH17	27253	broad.mit.edu	37	chr13	58209184	58209184	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacgcgggctgccacaccaGcttcaccggacaagggacta	12	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58209184	C	C	58209184	3	2	106	1	0	0	0	0	1	0	0	0	11606	971	34	4	2506	4	PCDH17	13	58209184	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	16701300	58209184	56960694	1343	104038											
DIAPH3	81624	broad.mit.edu	37	chr13	60545246	60545246	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagtggccagttccaccttCtttagagggaggcaaaggaa	13	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60545246	A	A	60545246	4	1	106	1	0	0	0	0	0	1	0	0	4560	922	32	3	1954	3	DIAPH3	13	60545246	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2336062	60545246	54624632	1344	104039											
KLHL1	57626	broad.mit.edu	37	chr13	70314575	70314575	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccgagcaattgacatacTggctacaaatgtccattgtt	8	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70314575	A	A	70314575	3	1	106	1	0	0	0	0	1	0	0	0	8436	1580	55	5	509	5	KLHL1	13	70314575	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	9769329	70314575	44855303	1345	104040											
C13orf34	79866	broad.mit.edu	37	chr13	73319235	73319235	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatctccgactccttacctTcggcttctcccggaagtcct	7	17	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73319235	A	A	73319235	3	1	106	1	0	0	0	0	1	0	0	0	1741	1783	62	5	654	5	C13orf34	13	73319235	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	3004660	73319235	41850643	1346	104041											
KLF5	688	broad.mit.edu	37	chr13	73636958	73636958	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgcgtgtgcgtgtgtgcaCgcgcgtgcccttttcaacct	13	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73636958	T	T	73636958	1	4	106	0	1	0	0	0	0	0	0	0	8420	551	19	4		4	KLF5	13	73636958	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	317723	73636958	41532920	1347	104042											
TBC1D4	9882	broad.mit.edu	37	chr13	75901815	75901815	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcattcataataaaaaatgGagcatgcatattaccatatc	5	7	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75901815	C	C	75901815	1	2	106	0	1	0	0	0	0	0	0	0	15744	1189	41	4		4	TBC1D4	13	75901815	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2264857	75901815	39268063	1348	104043											
MYCBP2	23077	broad.mit.edu	37	chr13	77837727	77837727	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacacaatgttcattttTaagagtatgaaaaattgaaa	6	3	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77837727	A	A	77837727	1	1	106	0	1	0	0	0	0	0	0	0	10112	1769	61	5		5	MYCBP2	13	77837727	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1935912	77837727	37332151	1349	104044											
SLITRK6	84189	broad.mit.edu	37	chr13	86369289	86369289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattggattaaaggttcctGgcagtatttccttaatggca	10	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86369289	T	T	86369289	3	4	106	1	0	0	0	0	1	0	0	0	14861	1348	47	2	1174	2	SLITRK6	13	86369289	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	8531562	86369289	28800589	1350	104045											
GPC5	2262	broad.mit.edu	37	chr13	92101100	92101100	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcagattgcggctcgccaGgatatgcagcagtttcttca	10	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92101100	T	T	92101100	3	4	106	1	0	0	0	0	1	0	0	0	6666	991	35	2	255	2	GPC5	13	92101100	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	5731811	92101100	23068778	1351	104046											
GPC6	10082	broad.mit.edu	37	chr13	94047718	94047718	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggtcaatcattatttcaAtcacatcaattttcccatac	2	11	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94047718	G	G	94047718	1	3	106	0	1	0	0	0	0	0	0	0	6667	116	4	5		5	GPC6	13	94047718	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1946618	94047718	21122160	1352	104047											
NALCN	259232	broad.mit.edu	37	chr13	101797007	101797007	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgacaataaaatagaaaGaaacccaacccacatatact	4	9	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101797007	T	T	101797007	1	4	106	0	1	0	0	0	0	0	0	0	10242	957	33	3		3	NALCN	13	101797007	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	7749289	101797007	13372871	1353	104048											
SLC10A2	6555	broad.mit.edu	37	chr13	103701510	103701510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtcatgataatatgacGgtggctttttcctctcatat	8	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103701510	T	T	103701510	1	4	106	0	1	0	0	0	0	0	0	0	14487	1131	39	1		1	SLC10A2	13	103701510	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1904503	103701510	11468368	1354	104049											
SLC10A2	6555	broad.mit.edu	37	chr13	103718254	103718254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgccatcgacccaataggCcaagatattggaggcagttc	11	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103718254	A	A	103718254	3	1	106	1	0	0	0	0	1	0	0	0	14487	739	26	3	724	3	SLC10A2	13	103718254	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	16744	103718254	11451624	1355	104050											
LIG4	3981	broad.mit.edu	37	chr13	108861585	108861585	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcaattctgttctccaGgtcaggctttggctggctat	10	10	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108861585	A	A	108861585	2	1	106	1	0	0	0	0	0	0	0	1	8855	991	35	4		4	LIG4	13	108861585	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	5143331	108861585	6308293	1356	104051											
MYO16	23026	broad.mit.edu	37	chr13	109793613	109793613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccccgcgccctacagccctCccagctccaggcctctcagc	7	24	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109793613	A	A	109793613	3	1	106	1	0	0	0	0	1	0	0	0	10158	855	30	3	5109	3	MYO16	13	109793613	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	932028	109793613	5376265	1357	104052											
COL4A2	1284	broad.mit.edu	37	chr13	111132683	111132683	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggagcaaggccatccaGgaagccctggatttaaagga	14	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111132683	T	T	111132683	4	4	106	1	0	0	0	0	0	1	0	0	3722	1001	35	2	2822	2	COL4A2	13	111132683	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1339070	111132683	4037195	1358	104053											
COL4A2	1284	broad.mit.edu	37	chr13	111158944	111158944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggagaaggcgcacaacCaggacctgggtaggtacctc	14	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111158944	A	A	111158944	3	1	106	1	0	0	0	0	1	0	0	0	3722	595	21	2	4763	2	COL4A2	13	111158944	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	26261	111158944	4010934	1359	104054											
F10	2159	broad.mit.edu	37	chr13	113798162	113798162	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccggccgtcctctttctttCagggccctacccctgtggga	10	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113798162	A	A	113798162	1	1	106	0	1	0	0	0	0	0	0	0	5379	841	29	3		3	F10	13	113798162	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2639218	113798162	1371716	1360	104055											
ADPRHL1	113622	broad.mit.edu	37	chr13	114107681	114107681	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcctacagtgctgttctcCttgcagacatttctgtagcc	8	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114107681	T	T	114107681	2	4	106	1	0	0	0	0	0	0	0	1	332	680	24	4		4	ADPRHL1	13	114107681	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	309519	114107681	1062197	1361	104056											
POTEG	404785	broad.mit.edu	37	chr14	19573004	19573004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttattgtccatacttgattaCttaagaataaaattatttta	3	4	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19573004	G	G	19573004	1	3	106	0	1	0	0	0	0	0	0	0	12362	580	20	4		4	POTEG	14	19573004	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08		19573004	87776536	1362	104057											
OR4L1	122742	broad.mit.edu	37	chr14	20528425	20528425	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttggacatgtgtctctcCactgccacaacacccaagat	6	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20528425	T	T	20528425	2	4	106	1	0	0	0	0	0	0	0	1	11168	581	21	4		4	OR4L1	14	20528425	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	955421	20528425	86821115	1363	104058											
TEP1	7011	broad.mit.edu	37	chr14	20854509	20854509	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagcgactcccgccttcacCctcatccattcttgcagccc	7	19	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20854509	G	G	20854509	1	3	106	0	1	0	0	0	0	0	0	0	15881	638	22	4		4	TEP1	14	20854509	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	326084	20854509	86495031	1364	104059											
RNASE2	6036	broad.mit.edu	37	chr14	21424254	21424254	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaagccaggtgcctttaatCcactgtaacctcacaactcc	7	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21424254	A	A	21424254	2	1	106	1	0	0	0	0	0	0	0	1	13515	845	30	3		3	RNASE2	14	21424254	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	569745	21424254	85925286	1365	104060											
NDRG2	57447	broad.mit.edu	37	chr14	21486634	21486634	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgaggaacgaggtctgGgtggggtccagttttgagtt	16	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21486634	T	T	21486634	2	4	106	1	0	0	0	0	0	0	0	1	10347	1219	43	2		2	NDRG2	14	21486634	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	62380	21486634	85862906	1366	104061											
TOX4	9878	broad.mit.edu	37	chr14	21945517	21945517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagggacgggaagccggGcggagaggcgactgacggga	21	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21945517	T	T	21945517	1	4	106	0	1	0	0	0	0	0	0	0	16504	1218	42	3		3	TOX4	14	21945517	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	458883	21945517	85404023	1367	104062											
OXA1L	5018	broad.mit.edu	37	chr14	23240419	23240419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcctctgtgaaaaaggacTagggaaaggggtctaaaaat	11	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23240419	C	C	23240419	1	2	106	0	1	0	0	0	0	0	0	0	11422	1537	53	5		5	OXA1L	14	23240419	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1294902	23240419	84109121	1368	104063											
IL25	64806	broad.mit.edu	37	chr14	23842476	23842476	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcaggacacctctgaggAgctgctgaggtggagcactg	17	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23842476	G	G	23842476	3	3	106	1	0	0	0	0	1	0	0	0	7748	304	11	5	164	5	IL25	14	23842476	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	602057	23842476	83507064	1369	104064											
MYH6	4624	broad.mit.edu	37	chr14	23853535	23853535	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagcgtgagaagaacGttaaatctaccaacagcatc	9	10	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23853535	C	C	23853535	1	2	106	0	1	0	0	0	0	0	0	0	10132	1160	40	4		4	MYH6	14	23853535	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	11059	23853535	83496005	1370	104065											
JPH4	84502	broad.mit.edu	37	chr14	24041135	24041135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggcgtctgctgccctgtcGggtccagagacagggattta	15	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24041135	C	C	24041135	1	2	106	0	1	0	0	0	0	0	0	0	8033	1131	39	4		4	JPH4	14	24041135	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	187600	24041135	83308405	1371	104066											
LTB4R	1241	broad.mit.edu	37	chr14	24785583	24785583	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctaccacgtggtgaacctGgctgaggcgggccgcgcgct	15	15	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24785583	A	A	24785583	2	1	106	1	0	0	0	0	0	0	0	1	9158	1335	47	4		4	LTB4R	14	24785583	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	744448	24785583	82563957	1372	104067											
NYNRIN	57523	broad.mit.edu	37	chr14	24877034	24877034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatccaggggcaggcccCcaacgggctgacttcattgt	13	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24877034	A	A	24877034	1	1	106	0	1	0	0	0	0	0	0	0	10891	638	22	2		2	NYNRIN	14	24877034	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	91451	24877034	82472506	1373	104068											
NYNRIN	57523	broad.mit.edu	37	chr14	24877306	24877306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggggcgactgcgctggGgccctgcccctctgctgacc	16	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24877306	T	T	24877306	3	4	106	1	0	0	0	0	1	0	0	0	10891	1232	43	2	436	2	NYNRIN	14	24877306	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	272	24877306	82472234	1374	104069											
GZMH	2999	broad.mit.edu	37	chr14	25075914	25075914	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccataggagagaataccttgGgctacgtccttacacacgag	10	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25075914	T	T	25075914	2	4	106	1	0	0	0	0	0	0	0	1	6982	1219	43	2		2	GZMH	14	25075914	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	198608	25075914	82273626	1375	104070											
PRKD1	5587	broad.mit.edu	37	chr14	30095616	30095616	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctcttctatgtttttcCtgtaaatatcgctttttaaa	3	8	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30095616	A	A	30095616	1	1	106	0	1	0	0	0	0	0	0	0	12624	696	24	2		2	PRKD1	14	30095616	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5019702	30095616	77253924	1376	104071											
PRKD1	5587	broad.mit.edu	37	chr14	30133065	30133065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggtaattcagaccacacCctggaaagggaaaataaaaa	8	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30133065	A	A	30133065	3	1	106	1	0	0	0	0	1	0	0	0	12624	637	22	2	2262	2	PRKD1	14	30133065	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	37449	30133065	77216475	1377	104072											
G2E3	55632	broad.mit.edu	37	chr14	31077153	31077153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatttctttagttcacGgtggtccttcacctggtttc	8	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31077153	T	T	31077153	3	4	106	1	0	0	0	0	1	0	0	0	6200	1116	39	1	1420	1	G2E3	14	31077153	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	944088	31077153	76272387	1378	104073											
HEATR5A	25938	broad.mit.edu	37	chr14	31778370	31778370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcattttcactagtctctGctgtgtagaaagcaccacct	7	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31778370	T	T	31778370	3	4	106	1	0	0	0	0	1	0	0	0	7098	1319	46	3	1712	3	HEATR5A	14	31778370	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	701217	31778370	75571170	1379	104074											
PSMA6	5687	broad.mit.edu	37	chr14	35761599	35761599	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtaccccggaagcagtcgCtgcaacttccgggaggtgct	14	12	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35761599	T	T	35761599	1	4	106	0	1	0	0	0	0	0	0	0	12777	812	28	4		4	PSMA6	14	35761599	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	3983229	35761599	71587941	1380	104075											
MDGA2	161357	broad.mit.edu	37	chr14	47601038	47601038	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agattctttagttttaagatCtttgtttcaccctgaaaatg	6	6	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47601038	T	T	47601038	2	4	106	1	0	0	0	0	0	0	0	1	9500	912	32	4		4	MDGA2	14	47601038	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	11839439	47601038	59748502	1381	104076											
SAMD4A	23034	broad.mit.edu	37	chr14	55236950	55236950	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcaaagaaagtatgttggGatttcattctttgtaatgcg	10	5	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55236950	T	T	55236950	1	4	106	0	1	0	0	0	0	0	0	0	13932	1189	41	3		3	SAMD4A	14	55236950	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	7635912	55236950	52112590	1382	104077											
EXOC5	10640	broad.mit.edu	37	chr14	57684713	57684713	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttgcctatcaatgccagTatccaatttcatctccattt	3	12	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57684713	G	G	57684713	3	3	106	1	0	0	0	0	1	0	0	0	5349	1638	57	5	542	5	EXOC5	14	57684713	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	2447763	57684713	49664827	1383	104078											
SLC35F4	341880	broad.mit.edu	37	chr14	58036699	58036699	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacattttaaacaagacCtggaatgagaaagaaactct	7	6	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58036699	A	A	58036699	5	1	106	1	0	0	0	0	0	0	1	0	14705	695	24	2	536	2	SLC35F4	14	58036699	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	351986	58036699	49312841	1384	104079											
KCNH5	27133	broad.mit.edu	37	chr14	63468328	63468328	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tattaattactacaaacaatCcgtaaacctttaattttgta	2	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63468328	A	A	63468328	1	1	106	0	1	0	0	0	0	0	0	0	8105	870	30	3		3	KCNH5	14	63468328	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5431629	63468328	43881212	1385	104080											
RHOJ	57381	broad.mit.edu	37	chr14	63671738	63671738	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgccttcccagaggaatacGtgcccactgtgtttgaccac	9	14	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63671738	A	A	63671738	3	1	106	1	0	0	0	0	1	0	0	0	13450	1145	40	4	153	4	RHOJ	14	63671738	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	203410	63671738	43677802	1386	104081											
SYNE2	23224	broad.mit.edu	37	chr14	64678611	64678611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttgtggccgaaggtgGccttgctgtctgtctgaact	12	9	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64678611	T	T	64678611	1	4	106	0	1	0	0	0	0	0	0	0	15565	1218	42	3		3	SYNE2	14	64678611	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1006873	64678611	42670929	1387	104082											
PLEKHG3	26030	broad.mit.edu	37	chr14	65208508	65208508	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactccatctccaggttcaAcagccttccccggccagacc	6	18	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65208508	G	G	65208508	3	3	106	1	0	0	0	0	1	0	0	0	12165	43	2	5	2155	5	PLEKHG3	14	65208508	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	529897	65208508	42141032	1388	104083											
FUT8	2530	broad.mit.edu	37	chr14	66135974	66135974	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgacagaatcccaaggactGcagcaaagccaaaaagctgg	10	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66135974	C	C	66135974	3	2	106	1	0	0	0	0	1	0	0	0	6170	1319	46	4	728	4	FUT8	14	66135974	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	927466	66135974	41213566	1389	104084											
FAM71D	161142	broad.mit.edu	37	chr14	67675062	67675062	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattttcaaactaccttgacCccagtagaaagtgaggcaaa	7	9	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67675062	T	T	67675062	2	4	106	1	0	0	0	0	0	0	0	1	5661	610	22	4		4	FAM71D	14	67675062	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1539088	67675062	39674478	1390	104085											
RDH12	145226	broad.mit.edu	37	chr14	68192624	68192624	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataccttgttttaaaaggaaGgggcagagcaagtgactcct	11	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68192624	A	A	68192624	1	1	106	0	1	0	0	0	0	0	0	0	13299	1015	35	4		4	RDH12	14	68192624	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	517562	68192624	39156916	1391	104086											
SLC10A1	6554	broad.mit.edu	37	chr14	70263456	70263456	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcccagctcttcccctcaAttgtgacatatctaatgtag	6	12	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70263456	G	G	70263456	1	3	106	0	1	0	0	0	0	0	0	0	14486	116	4	5		5	SLC10A1	14	70263456	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	2070832	70263456	37086084	1392	104087											
SMOC1	64093	broad.mit.edu	37	chr14	70490078	70490078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcccaagaaatgtgcccGgcgtttcaccgactactgtg	10	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70490078	T	T	70490078	3	4	106	1	0	0	0	0	1	0	0	0	14915	1116	39	1	1247	1	SMOC1	14	70490078	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	226622	70490078	36859462	1393	104088											
SLC8A3	6547	broad.mit.edu	37	chr14	70513150	70513150	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgggctgaacccaggaatGagagacaagggctagggggc	19	7	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70513150	T	T	70513150	1	4	106	0	1	0	0	0	0	0	0	0	14822	1305	45	3		3	SLC8A3	14	70513150	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	23072	70513150	36836390	1394	104089											
ADAM20	8748	broad.mit.edu	37	chr14	70991190	70991190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcctggagcagggcatgCtgctctgtgtaggtgaacac	14	9	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70991190	A	A	70991190	3	1	106	1	0	0	0	0	1	0	0	0	242	796	28	3	1899	3	ADAM20	14	70991190	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	478040	70991190	36358350	1395	104090											
ACOT1	641371	broad.mit.edu	37	chr14	74004537	74004537	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcccggggtgcggcgcgagCcggtgcgcgcgggccgggtg	23	14	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74004537	G	G	74004537	3	3	106	1	0	0	0	0	1	0	0	0	148	739	26	4	414	4	ACOT1	14	74004537	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3013347	74004537	33345003	1396	104091											
C14orf43	91748	broad.mit.edu	37	chr14	74192094	74192094	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggcagccagggagtgaGgtgggcagggccctggccac	19	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74192094	A	A	74192094	1	1	106	0	1	0	0	0	0	0	0	0	1787	1015	35	4		4	C14orf43	14	74192094	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	187557	74192094	33157446	1397	104092											
LTBP2	4053	broad.mit.edu	37	chr14	74972698	74972698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagggatgcagagggacaCgctctctgtaaacctctgag	13	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74972698	T	T	74972698	1	4	106	0	1	0	0	0	0	0	0	0	9161	551	19	4		4	LTBP2	14	74972698	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	780604	74972698	32376842	1398	104093											
RPS6KL1	83694	broad.mit.edu	37	chr14	75376671	75376671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaggttcggagaagtcCtaggaggctccagggcgatt	17	7	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75376671	A	A	75376671	3	1	106	1	0	0	0	0	1	0	0	0	13770	681	24	2	897	2	RPS6KL1	14	75376671	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	403973	75376671	31972869	1399	104094											
PGF	5228	broad.mit.edu	37	chr14	75415338	75415338	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggagtggcccacgagtttcCggcactcttctctctctcct	10	15	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75415338	G	G	75415338	1	3	106	0	1	0	0	0	0	0	0	0	11883	667	23	4		4	PGF	14	75415338	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	38667	75415338	31934202	1400	104095											
TMEM63C	57156	broad.mit.edu	37	chr14	77722812	77722812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaggggagagggtgtgcCcagggccttgcccccaacgt	16	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77722812	A	A	77722812	1	1	106	0	1	0	0	0	0	0	0	0	16315	638	22	2		2	TMEM63C	14	77722812	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2307474	77722812	29626728	1401	104096											
VIPAR	63894	broad.mit.edu	37	chr14	77907505	77907505	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagtataacctcacaaaatCgagtgcctcctctaggagaa	8	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77907505	A	A	77907505	1	1	106	0	1	0	0	0	0	0	0	0	17295	899	31	3		3	VIPAR	14	77907505	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	184693	77907505	29442035	1402	104097											
AHSA1	10598	broad.mit.edu	37	chr14	77929269	77929269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagtaagggaaagatctGgagctgtgttgcctaataat	13	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77929269	T	T	77929269	1	4	106	0	1	0	0	0	0	0	0	0	418	1363	47	2		2	AHSA1	14	77929269	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	21764	77929269	29420271	1403	104098											
ISM2	145501	broad.mit.edu	37	chr14	77948569	77948569	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcctggcttcctcaatgGtcttgcctgggaagcctcca	10	14	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77948569	T	T	77948569	1	4	106	0	1	0	0	0	0	0	0	0	7931	1276	44	3		3	ISM2	14	77948569	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	19300	77948569	29400971	1404	104099											
NRXN3	9369	broad.mit.edu	37	chr14	78748476	78748476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttacccatttgtggcctGgcagggacccctgtcaggtg	13	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78748476	T	T	78748476	1	4	106	0	1	0	0	0	0	0	0	0	10762	1363	47	2		2	NRXN3	14	78748476	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	799907	78748476	28601064	1405	104100											
NRXN3	9369	broad.mit.edu	37	chr14	78993116	78993116	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttatagacaggaaagctGagttggactaagtgaaataa	10	3	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78993116	A	A	78993116	1	1	106	0	1	0	0	0	0	0	0	0	10762	1305	45	4		4	NRXN3	14	78993116	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	244640	78993116	28356424	1406	104101											
DIO2	1734	broad.mit.edu	37	chr14	80669342	80669342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggagtcccccggtatcGcccagccatctgatggatga	12	12	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80669342	T	T	80669342	3	4	106	1	0	0	0	0	1	0	0	0	4565	1087	38	3	313	3	DIO2	14	80669342	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1676226	80669342	26680198	1407	104102											
C14orf145	145508	broad.mit.edu	37	chr14	81223072	81223072	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actttaaaatgttaaaataaGaaacatggagattccctaag	6	5	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81223072	C	C	81223072	1	2	106	0	1	0	0	0	0	0	0	0	1762	957	33	4		4	C14orf145	14	81223072	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	553730	81223072	26126468	1408	104103											
TSHR	7253	broad.mit.edu	37	chr14	81562916	81562916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaagaaatatagtccaaCtctccagaaacaggccagca	7	11	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81562916	A	A	81562916	1	1	106	0	1	0	0	0	0	0	0	0	16747	580	20	3		3	TSHR	14	81562916	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	339844	81562916	25786624	1409	104104											
GALC	2581	broad.mit.edu	37	chr14	88407816	88407816	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacttctaatcaaaataCcacctttatttactcttcct	2	12	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88407816	A	A	88407816	3	1	106	1	0	0	0	0	1	0	0	0	6263	507	18	3	312	3	GALC	14	88407816	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	6844900	88407816	18941724	1410	104105											
SMEK1	55671	broad.mit.edu	37	chr14	91927780	91927780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtacggatccaggagagCctggagatcctggggatcca	15	9	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91927780	A	A	91927780	3	1	106	1	0	0	0	0	1	0	0	0	14907	739	26	3	173	3	SMEK1	14	91927780	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3519964	91927780	15421760	1411	104106											
RIN3	79890	broad.mit.edu	37	chr14	93125370	93125370	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcatgtgtcagaaccacAgggtataactgctggggctg	12	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93125370	G	G	93125370	1	3	106	0	1	0	0	0	0	0	0	0	13484	203	7	5		5	RIN3	14	93125370	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1197590	93125370	14224170	1412	104107											
C14orf109	26175	broad.mit.edu	37	chr14	93653197	93653197	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatttttaggtaaaacctgaGatagagtactacaaaatcat	6	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93653197	A	A	93653197	1	1	106	0	1	0	0	0	0	0	0	0	1752	957	33	4		4	C14orf109	14	93653197	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	527827	93653197	13696343	1413	104108											
KIAA1409	57578	broad.mit.edu	37	chr14	94101056	94101056	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctctgtgtccactctgctCccttgttaaagaatagattt	6	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94101056	T	T	94101056	1	4	106	0	1	0	0	0	0	0	0	0	8300	870	30	4		4	KIAA1409	14	94101056	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	447859	94101056	13248484	1414	104109											
PPP4R4	57718	broad.mit.edu	37	chr14	94731788	94731788	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatttctgttcctggaccCtcttctgtcaccccatcgac	5	18	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731788	T	T	94731788	2	4	106	1	0	0	0	0	0	0	0	1	12506	668	24	4		4	PPP4R4	14	94731788	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	630732	94731788	12617752	1415	104110											
SERPINA10	51156	broad.mit.edu	37	chr14	94750231	94750231	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctgccatccattgctgGtatcctgtgtgtgtttgata	9	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94750231	T	T	94750231	1	4	106	0	1	0	0	0	0	0	0	0	14200	1276	44	3		3	SERPINA10	14	94750231	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	18443	94750231	12599309	1416	104111											
SERPINA1	5265	broad.mit.edu	37	chr14	94845955	94845955	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaagctggcagacctgtcgTgcagaaaagaaattcaaggc	12	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94845955	A	A	94845955	1	1	106	0	1	0	0	0	0	0	0	0	14199	1711	59	5		5	SERPINA1	14	94845955	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	95724	94845955	12503585	1417	104112											
SERPINA11	256394	broad.mit.edu	37	chr14	94914953	94914953	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaaagcaaaattggtaatGgtgggtgtgattctgtggta	14	4	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94914953	T	T	94914953	2	4	106	1	0	0	0	0	0	0	0	1	14201	1335	47	2		2	SERPINA11	14	94914953	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	68998	94914953	12434587	1418	104113											
SERPINA9	327657	broad.mit.edu	37	chr14	94936027	94936027	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggtataggcggaaggcaaAgtcggtgttgagggaataca	17	5	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94936027	T	T	94936027	3	4	106	1	0	0	0	0	1	0	0	0	14208	72	3	5	1118	5	SERPINA9	14	94936027	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	21074	94936027	12413513	1419	104114											
SERPINA9	327657	broad.mit.edu	37	chr14	94936140	94936140	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtagattggagcacagaggCcaacagcaaagagtactcca	11	9	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94936140	G	G	94936140	3	3	106	1	0	0	0	0	1	0	0	0	14208	739	26	4	1231	4	SERPINA9	14	94936140	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	113	94936140	12413400	1420	104115											
TCL1A	8115	broad.mit.edu	37	chr14	96178149	96178150	+	Intron	DEL	AG	-	-													acgccgtcaatctgagaggcAgagagagagagaaggcattg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96178150	-	-	96178149	6	5	106	0	1	1	0	1	0	0	0	0	15826	203	7	0		0	TCL1A	14	96178149	Intron	DEL	AG	TCGA-44-2656-01A-02D-0969-08	1242009	96178149	11171391	1421	104116											
BCL11B	64919	broad.mit.edu	37	chr14	99641151	99641151	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccggggctgggcagcggCgcgggcttgcgcgggaagag	22	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99641151	G	G	99641151	2	3	106	1	0	0	0	0	0	0	0	1	1369	755	27	4		4	BCL11B	14	99641151	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	3463002	99641151	7708389	1422	104117											
BEGAIN	57596	broad.mit.edu	37	chr14	101005479	101005479	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggccaggtcgcgggcGgaggcatcggacaggcggga	20	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101005479	A	A	101005479	2	1	106	1	0	0	0	0	0	0	0	1	1402	1103	39	4		4	BEGAIN	14	101005479	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1364328	101005479	6344061	1423	104118											
DYNC1H1	1778	broad.mit.edu	37	chr14	102476788	102476788	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattgctgaaaatctccctGaacaagaggttcgttacaaa	7	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102476788	T	T	102476788	4	4	106	1	0	0	0	0	0	1	0	0	4881	1291	45	3	6519	3	DYNC1H1	14	102476788	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1471309	102476788	4872752	1424	104119											
CDC42BPB	9578	broad.mit.edu	37	chr14	103416642	103416642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcagaacagcggctgcgCcgacctgatggcctcagtgc	12	14	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103416642	A	A	103416642	1	1	106	0	1	0	0	0	0	0	0	0	3103	754	26	3		3	CDC42BPB	14	103416642	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	939854	103416642	3932898	1425	104120											
AHNAK2	113146	broad.mit.edu	37	chr14	105405431	105405431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggagcttccaaaggcaGgttaaggtccacaggctgct	15	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105405431	T	T	105405431	3	4	106	1	0	0	0	0	1	0	0	0	415	991	35	2	1034	2	AHNAK2	14	105405431	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1988789	105405431	1944109	1426	104121											
AHNAK2	113146	broad.mit.edu	37	chr14	105405564	105405564	+	Frame_Shift_Del	DEL	G	-	-													cactgcacttccctcacagtGgggatgaacacatcatcctc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105405564	-	-	105405564	7	5	106	1	0	1	0	1	0	0	0	0	415	1335	47	0	1167	0	AHNAK2	14	105405564	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	133	105405564	1943976	1427	104122											
AHNAK2	113146	broad.mit.edu	37	chr14	105407714	105407714	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcgaatccattccaacttCtccaacagcaagccccaagt	4	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105407714	T	T	105407714	3	4	106	1	0	0	0	0	1	0	0	0	415	922	32	4	3317	4	AHNAK2	14	105407714	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2150	105407714	1941826	1428	104123											
AHNAK2	113146	broad.mit.edu	37	chr14	105416636	105416636	+	Frame_Shift_Del	DEL	G	-	-													cacgttcacttggccagcctGgacctccaggtcggcggaag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105416636	-	-	105416636	7	5	106	1	0	1	0	1	0	0	0	0	415	1357	47	0	12239	0	AHNAK2	14	105416636	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	8922	105416636	1932904	1429	104124											
AHNAK2	113146	broad.mit.edu	37	chr14	105418949	105418949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacttccgccttggggcCtttcaggtccagcttggggc	13	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105418949	A	A	105418949	3	1	106	1	0	0	0	0	1	0	0	0	415	681	24	2	14552	2	AHNAK2	14	105418949	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2313	105418949	1930591	1430	104125											
AHNAK2	113146	broad.mit.edu	37	chr14	105421815	105421815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagggatggaactgccatGgcaccttctctcaagttaaa	9	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105421815	T	T	105421815	1	4	106	0	1	0	0	0	0	0	0	0	415	1363	47	2		2	AHNAK2	14	105421815	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2866	105421815	1927725	1431	104126											
GPR132	29933	broad.mit.edu	37	chr14	105518393	105518393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaggtcttggcggagagGcccagggaggcccacggggc	19	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105518393	T	T	105518393	2	4	106	1	0	0	0	0	0	0	0	1	6707	1190	42	3		3	GPR132	14	105518393	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	96578	105518393	1831147	1432	104127											
OR4N4	283694	broad.mit.edu	37	chr15	22383507	22383507	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcccatttgccaggtaccAttgtaggcaatggaggagag	12	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22383507	T	T	22383507	1	4	106	0	1	0	0	0	0	0	0	0	11172	232	8	5		5	OR4N4	15	22383507	3'UTR	SNP	A	TCGA-44-2656-01A-02D-0969-08		22383507	80147885	1433	104128											
RYR3	6263	broad.mit.edu	37	chr15	33765778	33765778	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacaccttcttccaccttGgcgtctgacaaagtcattta	5	14	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33765778	T	T	33765778	1	4	106	0	1	0	0	0	0	0	0	0	13881	1363	47	2		2	RYR3	15	33765778	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	11382271	33765778	68765614	1434	104129											
BUB1B	701	broad.mit.edu	37	chr15	40468681	40468681	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacacttctgttacaggggCgtttatgcaatgagcctttg	10	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40468681	T	T	40468681	3	4	106	1	0	0	0	0	1	0	0	0	1581	768	27	4	406	4	BUB1B	15	40468681	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	6702903	40468681	62062711	1435	104130											
C15orf52	388115	broad.mit.edu	37	chr15	40628796	40628796	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgggccctgccagtcagcCtctccttgccccgggctttg	11	17	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40628796	T	T	40628796	3	4	106	1	0	0	0	0	1	0	0	0	1813	681	24	4	618	4	C15orf52	15	40628796	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	160115	40628796	61902596	1436	104131											
TGM7	116179	broad.mit.edu	37	chr15	43585794	43585794	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccttgttgttcctggagcTctgcaggtcgacagactcaa	10	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43585794	A	A	43585794	3	1	106	1	0	0	0	0	1	0	0	0	15958	1551	54	5	2134	5	TGM7	15	43585794	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	2956998	43585794	58945598	1437	104132											
TP53BP1	7158	broad.mit.edu	37	chr15	43720077	43720077	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcagaaggatcacttgagCctgggaggcagaggctgcag	17	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43720077	G	G	43720077	1	3	106	0	1	0	0	0	0	0	0	0	16507	754	26	4		4	TP53BP1	15	43720077	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	134283	43720077	58811315	1438	104133											
CKMT1B	1159	broad.mit.edu	37	chr15	43890471	43890471	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttgacctgtccatctaaCctgggcactggacttcgggc	10	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43890471	T	T	43890471	2	4	106	1	0	0	0	0	0	0	0	1	3481	506	18	4		4	CKMT1B	15	43890471	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	170394	43890471	58640921	1439	104134											
DUOX1	53905	broad.mit.edu	37	chr15	45444142	45444142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacgcagctgtctccacCagacggtgcaacagttcaag	9	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45444142	A	A	45444142	3	1	106	1	0	0	0	0	1	0	0	0	4840	595	21	2	3175	2	DUOX1	15	45444142	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1553671	45444142	57087250	1440	104135											
MYEF2	50804	broad.mit.edu	37	chr15	48441133	48441133	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actatccaggaataggcatcCggacaggcaaaggtctaaac	10	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48441133	T	T	48441133	1	4	106	0	1	0	0	0	0	0	0	0	10118	667	23	4		4	MYEF2	15	48441133	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2996991	48441133	54090259	1441	104136											
SLC12A1	6557	broad.mit.edu	37	chr15	48500307	48500307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggtcaaccgacccagcCtgcttgagattcacgagcaa	9	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48500307	A	A	48500307	3	1	106	1	0	0	0	0	1	0	0	0	14495	680	24	2	393	2	SLC12A1	15	48500307	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	59174	48500307	54031085	1442	104137											
CEP152	22995	broad.mit.edu	37	chr15	49048050	49048050	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaacactatatacaacttCtataatcattcttggtgttc	3	8	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49048050	T	T	49048050	1	4	106	0	1	0	0	0	0	0	0	0	3278	928	32	4		4	CEP152	15	49048050	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	547743	49048050	53483342	1443	104138											
USP8	9101	broad.mit.edu	37	chr15	50741619	50741619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatttccattcaatacttgGacctggaaacatcaaaaaag	5	8	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50741619	T	T	50741619	3	4	106	1	0	0	0	0	1	0	0	0	17216	1174	41	3	282	3	USP8	15	50741619	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1693569	50741619	51789773	1444	104139											
UNC13C	440279	broad.mit.edu	37	chr15	54307745	54307745	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagattatgttgaagtcaTggaacaagtccttgctaaac	8	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54307745	A	A	54307745	3	1	106	1	0	0	0	0	1	0	0	0	17112	1464	51	5	2647	5	UNC13C	15	54307745	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	3566126	54307745	48223647	1445	104140											
NEDD4	4734	broad.mit.edu	37	chr15	56140724	56140724	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcactgcacatactgtgaTttatgtagaagattcttcca	7	9	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56140724	C	C	56140724	3	2	106	1	0	0	0	0	1	0	0	0	10405	1493	52	5	1280	5	NEDD4	15	56140724	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	1832979	56140724	46390668	1446	104141											
ALDH1A2	8854	broad.mit.edu	37	chr15	58302788	58302788	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtttgtgtttggtggcCaaagcgcatttctggtggtt	14	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58302788	G	G	58302788	1	3	106	0	1	0	0	0	0	0	0	0	491	609	21	4		4	ALDH1A2	15	58302788	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2162064	58302788	44228604	1447	104142											
BNIP2	663	broad.mit.edu	37	chr15	59961504	59961504	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttgtaacagccagaagTgttctgataaaccaagaagg	11	7	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59961504	A	A	59961504	2	1	106	1	0	0	0	0	0	0	0	1	1483	1683	59	5		5	BNIP2	15	59961504	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	1658716	59961504	42569888	1448	104143											
VPS13C	54832	broad.mit.edu	37	chr15	62264919	62264919	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctttcatacttttacaagTctgtggttctccatcttcag	5	11	5	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62264919	C	C	62264919	3	2	106	1	0	0	0	0	1	0	0	0	17318	1667	58	5	8863	5	VPS13C	15	62264919	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	2303415	62264919	40266473	1449	104144											
FAM96A	84191	broad.mit.edu	37	chr15	64373466	64373466	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagttgctgaaaacagcttTggctcaatccagagcagagc	10	10	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64373466	G	G	64373466	1	3	106	0	1	0	0	0	0	0	0	0	5711	1827	63	5		5	FAM96A	15	64373466	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2108547	64373466	38157926	1450	104145											
LRRC49	54839	broad.mit.edu	37	chr15	71185460	71185460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatttaatattgtatgatGggtactcaaagtcttgtcca	7	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71185460	T	T	71185460	1	4	106	0	1	0	0	0	0	0	0	0	9093	1363	47	2		2	LRRC49	15	71185460	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	6811994	71185460	31345932	1451	104146											
BBS4	585	broad.mit.edu	37	chr15	73009200	73009200	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaaagattgggtaagtagAgaactttcagttctttctta	9	5	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73009200	T	T	73009200	1	4	106	0	1	0	0	0	0	0	0	0	1344	319	11	5		5	BBS4	15	73009200	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1823740	73009200	29522192	1452	104147											
C15orf60	283677	broad.mit.edu	37	chr15	73852136	73852136	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccccatgtctatgaacaatCtgcatggggtgcagaagagt	12	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73852136	A	A	73852136	3	1	106	1	0	0	0	0	1	0	0	0	1821	913	32	3	702	3	C15orf60	15	73852136	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	842936	73852136	28679256	1453	104148											
ISLR	3671	broad.mit.edu	37	chr15	74467708	74467708	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcaccttcaccccgctcaCcgcgctgtcccacctgcaga	9	20	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74467708	T	T	74467708	3	4	106	1	0	0	0	0	1	0	0	0	7928	507	18	4	511	4	ISLR	15	74467708	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	615572	74467708	28063684	1454	104149											
CCDC33	80125	broad.mit.edu	37	chr15	74627454	74627454	+	Intron	DEL	C	-	-													gtgacccccctggagtagctCccaggggttcaggtggtgga							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74627454	-	-	74627454	6	5	106	0	1	1	0	1	0	0	0	0	2833	855	30	0		0	CCDC33	15	74627454	Intron	DEL	C	TCGA-44-2656-01A-02D-0969-08	159746	74627454	27903938	1455	104150											
MAN2C1	4123	broad.mit.edu	37	chr15	75650895	75650895	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctgtagcaagaaccaggCgctgccccgcaggccgccct	12	16	1	1	rs150018240		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75650895	T	T	75650895	3	4	106	1	0	0	0	0	1	0	0	0	9310	768	27	4	839	4	MAN2C1	15	75650895	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1023441	75650895	26880497	1456	104151											
UBE2Q2	92912	broad.mit.edu	37	chr15	76168366	76168366	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaactgagattgcgccActgcactccagcctgggtaa	11	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76168366	G	G	76168366	1	3	106	0	1	0	0	0	0	0	0	0	16996	174	6	5		5	UBE2Q2	15	76168366	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	517471	76168366	26363026	1457	104152											
C15orf27	123591	broad.mit.edu	37	chr15	76452380	76452380	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggatgctgcgaagcccccaTagcaacgcacctaattcctc	8	16	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76452380	A	A	76452380	1	1	106	0	1	0	0	0	0	0	0	0	1801	1421	49	5		5	C15orf27	15	76452380	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	284014	76452380	26079012	1458	104153											
EFTUD1	79631	broad.mit.edu	37	chr15	82532979	82532979	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcgtgattaataaccactCtagactatgccagtcagaca	6	10	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82532979	T	T	82532979	1	4	106	0	1	0	0	0	0	0	0	0	5000	928	32	4		4	EFTUD1	15	82532979	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	6080599	82532979	19998413	1459	104154											
CPEB1	64506	broad.mit.edu	37	chr15	83215961	83215961	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcaggtaactccgttGgttattgaaagtcacacgac	9	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83215961	A	A	83215961	4	1	106	1	0	0	0	0	0	1	0	0	3832	1357	47	4	271	4	CPEB1	15	83215961	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	682982	83215961	19315431	1460	104155											
HOMER2	9455	broad.mit.edu	37	chr15	83543936	83543936	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaccagaaaggaatcctgcTcaccaagggcacatccctcg	9	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83543936	C	C	83543936	1	2	106	0	1	0	0	0	0	0	0	0	7346	1566	54	5		5	HOMER2	15	83543936	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	327975	83543936	18987456	1461	104156											
SH3GL3	6457	broad.mit.edu	37	chr15	84237394	84237394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactgtatgctgaaatacGggaaggagctcggggaagac	17	6	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84237394	T	T	84237394	3	4	106	1	0	0	0	0	1	0	0	0	14365	1116	39	1	315	1	SH3GL3	15	84237394	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	693458	84237394	18293998	1462	104157											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84611264	84611264	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaagtctggaagcccagagGagagcttcacgttgttcatg	13	8	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84611264	A	A	84611264	1	1	106	0	1	0	0	0	0	0	0	0	276	1189	41	4		4	ADAMTSL3	15	84611264	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	373870	84611264	17920128	1463	104158											
ZNF592	9640	broad.mit.edu	37	chr15	85326477	85326477	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggctctggctaagtttccgGttccagagctgcatatgttt	11	9	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85326477	C	C	85326477	3	2	106	1	0	0	0	0	1	0	0	0	18149	1261	44	4	573	4	ZNF592	15	85326477	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	715213	85326477	17204915	1464	104159											
AGBL1	123624	broad.mit.edu	37	chr15	86838537	86838537	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcaaagaggtctacttcCggcaagatgttctctgccag	9	12	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86838537	A	A	86838537	2	1	106	1	0	0	0	0	0	0	0	1	375	643	23	1		1	AGBL1	15	86838537	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1512060	86838537	15692855	1465	104160											
UNC45A	55898	broad.mit.edu	37	chr15	91483497	91483497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgcatcctatgccgtGtgcagtgtcaacattataat	9	9	1	0	rs143205426	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91483497	T	T	91483497	1	4	106	0	1	0	0	0	0	0	0	0	17114	1392	48	3		3	UNC45A	15	91483497	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4644960	91483497	11047895	1466	104161											
ARRDC4	91947	broad.mit.edu	37	chr15	98514435	98514435	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgtatttcagaaatcaCtgtgttcatcatcaaattag	6	7	5	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98514435	T	T	98514435	1	4	106	0	1	0	0	0	0	0	0	0	989	580	20	4		4	ARRDC4	15	98514435	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	7030938	98514435	4016957	1467	104162											
TARSL2	123283	broad.mit.edu	37	chr15	102197168	102197168	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctgtgcatttcgtattttCttatttagtgtacaactgtg	8	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102197168	T	T	102197168	2	4	106	1	0	0	0	0	0	0	0	1	15680	912	32	4		4	TARSL2	15	102197168	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	3682733	102197168	334224	1468	104163											
POLR3K	51728	broad.mit.edu	37	chr16	97680	97680	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacctgaggtcaggagttcGagaccatcctggccaacatg	11	12	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97680	T	T	97680	1	4	106	0	1	0	0	0	0	0	0	0	12332	1073	37	3		3	POLR3K	16	97680	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08		97680	90257073	1469	104164											
PDIA2	64714	broad.mit.edu	37	chr16	333356	333356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggagcaccctgccctgCtggtggaattctgtgagtgc	15	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	333356	A	A	333356	3	1	106	1	0	0	0	0	1	0	0	0	11762	796	28	3	189	3	PDIA2	16	333356	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	235676	333356	90021397	1470	104165											
MSLN	10232	broad.mit.edu	37	chr16	815525	815525	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgtcccgtgtctgcacAgccccccgtcgacatggtct	11	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	815525	T	T	815525	5	4	106	1	0	0	0	0	0	0	1	0	9975	202	7	5	733	5	MSLN	16	815525	Splice_Site	SNP	A	TCGA-44-2656-01A-02D-0969-08	482169	815525	89539228	1471	104166											
CLCN7	1186	broad.mit.edu	37	chr16	1499236	1499236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatggccccctccagaccCcgtggagctccccacccatc	8	22	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1499236	A	A	1499236	1	1	106	0	1	0	0	0	0	0	0	0	3499	638	22	2		2	CLCN7	16	1499236	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	683711	1499236	88855517	1472	104167											
CRAMP1L	57585	broad.mit.edu	37	chr16	1706003	1706003	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgggcgtggctcgcgtGgtgcactccaaggccttctg	15	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1706003	T	T	1706003	2	4	106	1	0	0	0	0	0	0	0	1	3878	1335	47	2		2	CRAMP1L	16	1706003	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	206767	1706003	88648750	1473	104168											
RNF151	146310	broad.mit.edu	37	chr16	2018677	2018677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccacaactgctaccgggaGctgcacaacgcctggagcgt	12	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2018677	T	T	2018677	3	4	106	1	0	0	0	0	1	0	0	0	13563	962	34	3	503	3	RNF151	16	2018677	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	312674	2018677	88336076	1474	104169											
PKD1	5310	broad.mit.edu	37	chr16	2162319	2162319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctgaaaggcagtggccCcctcaccccctcatccctca	8	19	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2162319	A	A	2162319	1	1	106	0	1	0	0	0	0	0	0	0	12058	638	22	2		2	PKD1	16	2162319	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	143642	2162319	88192434	1475	104170											
TRAF7	84231	broad.mit.edu	37	chr16	2223445	2223445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcctggccactgctccGggcaccagtgacaccccctc	12	18	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2223445	T	T	2223445	1	4	106	0	1	0	0	0	0	0	0	0	16570	1131	39	1		1	TRAF7	16	2223445	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	61126	2223445	88131308	1476	104171											
KCTD5	54442	broad.mit.edu	37	chr16	2732501	2732501	+	Translation_Start_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcagaggacgctattaaaAgccggacgcttccggtggaa	12	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2732501	T	T	2732501	1	4	106	1	0	0	0	0	0	0	0	0	8182	87	3	5		5	KCTD5	16	2732501	Translation_Start_Site	SNP	A	TCGA-44-2656-01A-02D-0969-08	509056	2732501	87622252	1477	104172											
ZSCAN10	84891	broad.mit.edu	37	chr16	3139922	3139922	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggagccttcggaggaccGgcggtccttgtccctggcgt	16	14	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3139922	A	A	3139922	3	1	106	1	0	0	0	0	1	0	0	0	18356	1115	39	4	833	4	ZSCAN10	16	3139922	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	407421	3139922	87214831	1478	104173											
MEFV	4210	broad.mit.edu	37	chr16	3298786	3298786	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggctgctggttaccctctgtCccctgagaggaggtggccat	14	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3298786	T	T	3298786	1	4	106	0	1	0	0	0	0	0	0	0	9552	870	30	4		4	MEFV	16	3298786	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	158864	3298786	87055967	1479	104174											
PPL	5493	broad.mit.edu	37	chr16	4947649	4947649	+	Intron	DEL	G	-	-													agagtagcacccccggtgctGgggggactcccaggaaaggt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4947649	-	-	4947649	6	5	106	0	1	1	0	1	0	0	0	0	12435	1363	47	0		0	PPL	16	4947649	Intron	DEL	G	TCGA-44-2656-01A-02D-0969-08	1648863	4947649	85407104	1480	104175											
SEC14L5	9717	broad.mit.edu	37	chr16	5053369	5053369	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggccttgggaggcagcaGagccaggtggagctggggct	21	8	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5053369	T	T	5053369	1	4	106	0	1	0	0	0	0	0	0	0	14098	957	33	3		3	SEC14L5	16	5053369	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	105720	5053369	85301384	1481	104176											
NAGPA	51172	broad.mit.edu	37	chr16	5078049	5078049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatcacagccgggacccCgccagaagtgcccggtgcat	12	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5078049	A	A	5078049	3	1	106	1	0	0	0	0	1	0	0	0	10238	652	23	1	509	1	NAGPA	16	5078049	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	24680	5078049	85276704	1482	104177											
A2BP1	54715	broad.mit.edu	37	chr16	7760604	7760604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaatgtaaaaaacacaccCctcaaattgctttgtttcag	5	9	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7760604	A	A	7760604	1	1	106	0	1	0	0	0	0	0	0	0	3	638	22	2		2	A2BP1	16	7760604	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2682555	7760604	82594149	1483	104178											
PMM2	5373	broad.mit.edu	37	chr16	8906839	8906839	+	Intron	DEL	A	-	-													cctttgtgtgccccgtccccAcccggcaggaggccagatca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8906839	-	-	8906839	6	5	106	0	1	1	0	1	0	0	0	0	12232	174	6	0		0	PMM2	16	8906839	Intron	DEL	A	TCGA-44-2656-01A-02D-0969-08	1146235	8906839	81447914	1484	104179											
USP7	7874	broad.mit.edu	37	chr16	8989091	8989091	+	Intron	DEL	A	-	-													ctcaattctcacactactctAacccggagggtaaagcctat							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8989091	-	-	8989091	6	5	106	0	1	1	0	1	0	0	0	0	17215	377	13	0		0	USP7	16	8989091	Intron	DEL	A	TCGA-44-2656-01A-02D-0969-08	82252	8989091	81365662	1485	104180											
TXNDC11	51061	broad.mit.edu	37	chr16	11791947	11791947	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtagatgaggctttcctactCctcatgaggtgcttttcaca	9	10	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11791947	A	A	11791947	1	1	106	0	1	0	0	0	0	0	0	0	16918	870	30	3		3	TXNDC11	16	11791947	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2802856	11791947	78562806	1486	104181											
RSL1D1	26156	broad.mit.edu	37	chr16	11935948	11935948	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatataaatacataatcCtcaagtttttctttttcttt	2	6	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11935948	A	A	11935948	1	1	106	0	1	0	0	0	0	0	0	0	13811	696	24	2		2	RSL1D1	16	11935948	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	144001	11935948	78418805	1487	104182											
MYH11	4629	broad.mit.edu	37	chr16	15841828	15841828	+	Intron	DEL	G	-	-													cacagagcagaagtcaccccGggtacctccagcatccattc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15841828	-	-	15841828	6	5	106	0	1	1	0	1	0	0	0	0	10125	1131	39	0		0	MYH11	16	15841828	Intron	DEL	G	TCGA-44-2656-01A-02D-0969-08	3905880	15841828	74512925	1488	104183											
MYH11	4629	broad.mit.edu	37	chr16	15847438	15847438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaggccaggaccccagcCctcccattgtccttccagat	7	18	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15847438	A	A	15847438	1	1	106	0	1	0	0	0	0	0	0	0	10125	638	22	2		2	MYH11	16	15847438	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5610	15847438	74507315	1489	104184											
TMC5	79838	broad.mit.edu	37	chr16	19485650	19485650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttccacagagagaagtGggatggcagctagaaaggat	13	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19485650	T	T	19485650	1	4	106	0	1	0	0	0	0	0	0	0	16111	1363	47	2		2	TMC5	16	19485650	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3638212	19485650	70869103	1490	104185											
GPR139	124274	broad.mit.edu	37	chr16	20043655	20043655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctggtcaggaagcagGtgatgtaaacacttacaatg	13	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043655	T	T	20043655	3	4	106	1	0	0	0	0	1	0	0	0	6713	1261	44	3	601	3	GPR139	16	20043655	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	558005	20043655	70311098	1491	104186											
UMOD	7369	broad.mit.edu	37	chr16	20360484	20360484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacaggtgcacgtcgtaaCggcctcatcctccgtgcagg	12	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20360484	A	A	20360484	3	1	106	1	0	0	0	0	1	0	0	0	17105	536	19	3	1819	3	UMOD	16	20360484	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	316829	20360484	69994269	1492	104187											
PDILT	204474	broad.mit.edu	37	chr16	20380897	20380897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggcattttgtacctggCgtcagagctcaagtttagga	12	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20380897	A	A	20380897	3	1	106	1	0	0	0	0	1	0	0	0	11768	768	27	3	741	3	PDILT	16	20380897	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	20413	20380897	69973856	1493	104188											
DNAH3	55567	broad.mit.edu	37	chr16	21008588	21008588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggaaagaggaatgagCtcttcccttcacataccagt	11	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21008588	A	A	21008588	1	1	106	0	1	0	0	0	0	0	0	0	4643	812	28	3		3	DNAH3	16	21008588	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	627691	21008588	69346165	1494	104189											
ZP2	7783	broad.mit.edu	37	chr16	21217024	21217024	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagaattaaaggttattaaGgtctgatttttaaaatttgc	7	2	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21217024	A	A	21217024	1	1	106	0	1	0	0	0	0	0	0	0	18345	1015	35	4		4	ZP2	16	21217024	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	208436	21217024	69137729	1495	104190											
OTOA	146183	broad.mit.edu	37	chr16	21737980	21737980	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagtgcagcagtgcctgGtaagaaaactcttcctgggt	13	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21737980	T	T	21737980	5	4	106	1	0	0	0	0	0	0	1	0	11396	1275	44	3	2133	3	OTOA	16	21737980	Splice_Site	SNP	G	TCGA-44-2656-01A-02D-0969-08	520956	21737980	68616773	1496	104191											
OTOA	146183	broad.mit.edu	37	chr16	21747486	21747486	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttgctataacaaagaatgAaggcagtaagtagtgtgaca	11	4	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21747486	T	T	21747486	1	4	106	0	1	0	0	0	0	0	0	0	11396	261	9	5		5	OTOA	16	21747486	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	9506	21747486	68607267	1497	104192											
PDZD9	255762	broad.mit.edu	37	chr16	21999929	21999929	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaactatttaccttgttActgggaatttggcctcaggg	10	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21999929	C	C	21999929	3	2	106	1	0	0	0	0	1	0	0	0	11800	391	14	5	407	5	PDZD9	16	21999929	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	252443	21999929	68354824	1498	104193											
EEF2K	29904	broad.mit.edu	37	chr16	22291725	22291725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagacctgcccctgggCtgcaacagggctgggcaggg	17	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22291725	A	A	22291725	1	1	106	0	1	0	0	0	0	0	0	0	4970	812	28	3		3	EEF2K	16	22291725	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	291796	22291725	68063028	1499	104194											
USP31	57478	broad.mit.edu	37	chr16	23116931	23116931	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcagatcttctcattagtCacttatttcaactaaaatat	3	8	5	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23116931	A	A	23116931	1	1	106	0	1	0	0	0	0	0	0	0	17189	841	29	3		3	USP31	16	23116931	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	825206	23116931	67237822	1500	104195											
COG7	91949	broad.mit.edu	37	chr16	23453753	23453753	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacttacaaggccttatcTttatagagagatatacacag	7	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23453753	C	C	23453753	1	2	106	0	1	0	0	0	0	0	0	0	3695	1624	56	5		5	COG7	16	23453753	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	336822	23453753	66901000	1501	104196											
PALB2	79728	broad.mit.edu	37	chr16	23634330	23634330	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgacttctacttgttgatCagaaagggtcccactgctac	8	11	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23634330	A	A	23634330	3	1	106	1	0	0	0	0	1	0	0	0	11500	826	29	3	624	3	PALB2	16	23634330	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	180577	23634330	66720423	1502	104197											
ERN2	10595	broad.mit.edu	37	chr16	23713521	23713521	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctggaggtcttgtctcTgcagttccactccccagggt	10	13	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23713521	C	C	23713521	2	2	106	1	0	0	0	0	0	0	0	1	5280	1567	55	5		5	ERN2	16	23713521	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	79191	23713521	66641232	1503	104198											
CHP2	63928	broad.mit.edu	37	chr16	23767594	23767594	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagggatctcccactcccTtcctgagggcattgacaacc	8	16	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23767594	A	A	23767594	1	1	106	0	1	0	0	0	0	0	0	0	3398	1624	56	5		5	CHP2	16	23767594	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	54073	23767594	66587159	1504	104199											
PRKCB	5579	broad.mit.edu	37	chr16	24046867	24046867	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggacgtcctcattgtcctCggtaggtggccctggggctc	15	12	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24046867	A	A	24046867	2	1	106	1	0	0	0	0	0	0	0	1	12614	898	31	3		3	PRKCB	16	24046867	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	279273	24046867	66307886	1505	104200											
PRKCB	5579	broad.mit.edu	37	chr16	24196565	24196565	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctccctacccccatccacAtggtttctttaggagaatgc	6	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24196565	C	C	24196565	1	2	106	0	1	0	0	0	0	0	0	0	12614	232	8	5		5	PRKCB	16	24196565	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	149698	24196565	66158188	1506	104201											
RBBP6	5930	broad.mit.edu	37	chr16	24578506	24578506	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacagcgaaagatcacagagGactcaaggcccgtcactacc	9	14	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24578506	C	C	24578506	3	2	106	1	0	0	0	0	1	0	0	0	13211	1165	41	4	1744	4	RBBP6	16	24578506	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	381941	24578506	65776247	1507	104202											
SLC5A11	115584	broad.mit.edu	37	chr16	24895432	24895432	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgatcatgcttataggagCgctcaccttgatgggctaca	11	10	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24895432	T	T	24895432	3	4	106	1	0	0	0	0	1	0	0	0	14777	768	27	4	670	4	SLC5A11	16	24895432	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	316926	24895432	65459321	1508	104203											
KIAA0556	23247	broad.mit.edu	37	chr16	27765433	27765433	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaaacagccagccagcTagctgtgtgggtatcactaa	11	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27765433	C	C	27765433	1	2	106	0	1	0	0	0	0	0	0	0	8253	1537	53	5		5	KIAA0556	16	27765433	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2870001	27765433	62589320	1509	104204											
XPO6	23214	broad.mit.edu	37	chr16	28118754	28118755	+	Intron	INS	-	A	A													caagtcaaggcctgtactgcINSaccgactcagtgtgttctac							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28118755	A	A	28118754	6	5	106	0	1	1	1	0	0	0	0	0	17575	725	25	0		0	XPO6	16	28118754	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	353321	28118754	62235999	1510	104205											
XPO6	23214	broad.mit.edu	37	chr16	28146492	28146493	+	Intron	DEL	CA	-	-													gtccccattctgattgatgtCacaacatgacagcgacaaaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28146493	-	-	28146492	6	5	106	0	1	1	0	1	0	0	0	0	17575	841	29	0		0	XPO6	16	28146492	Intron	DEL	CA	TCGA-44-2656-01A-02D-0969-08	27738	28146492	62208261	1511	104206											
APOB48R	55911	broad.mit.edu	37	chr16	28509228	28509228	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaacacaccaggcccctGcagaagctgcgccggagtca	11	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28509228	T	T	28509228	3	4	106	1	0	0	0	0	1	0	0	0	788	1319	46	3	2849	3	APOB48R	16	28509228	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	362736	28509228	61845525	1512	104207											
SH2B1	25970	broad.mit.edu	37	chr16	28878264	28878264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttcagggggaggaggGcagcctcagtggcagaagtg	17	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28878264	T	T	28878264	2	4	106	1	0	0	0	0	0	0	0	1	14340	1190	42	3		3	SH2B1	16	28878264	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	369036	28878264	61476489	1513	104208											
ATP2A1	487	broad.mit.edu	37	chr16	28898990	28898990	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctcctggttccgcggggCcatctactactttaagattg	12	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28898990	T	T	28898990	3	4	106	1	0	0	0	0	1	0	0	0	1140	739	26	4	905	4	ATP2A1	16	28898990	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	20726	28898990	61455763	1514	104209											
SPN	6693	broad.mit.edu	37	chr16	29675148	29675148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacctccggagagcctttGgtctctactagcgagcccct	9	17	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29675148	T	T	29675148	3	4	106	1	0	0	0	0	1	0	0	0	15191	1339	47	2	101	2	SPN	16	29675148	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	776158	29675148	60679605	1515	104210											
KIF22	3835	broad.mit.edu	37	chr16	29810856	29810856	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaagaaggggctgcagaagGaggttctcaggcctgctgtg	18	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29810856	A	A	29810856	1	1	106	0	1	0	0	0	0	0	0	0	8360	1189	41	4		4	KIF22	16	29810856	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	135708	29810856	60543897	1516	104211											
SEZ6L2	26470	broad.mit.edu	37	chr16	29897071	29897071	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctgagcgcaccatcagcCtgggatggacagaaacgtga	12	13	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29897071	T	T	29897071	5	4	106	1	0	0	0	0	0	0	1	0	14257	695	24	4	1607	4	SEZ6L2	16	29897071	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	86215	29897071	60457682	1517	104212											
ITGAX	3687	broad.mit.edu	37	chr16	31383687	31383687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctccgctccccgcgacgCccgtcccccagagctgcgtg	10	22	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31383687	A	A	31383687	1	1	106	0	1	0	0	0	0	0	0	0	7959	754	26	3		3	ITGAX	16	31383687	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1486616	31383687	58971066	1518	104213											
ITGAD	3681	broad.mit.edu	37	chr16	31422034	31422034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggggaatgggggcctttGtgctgaggcctgggcccctc	19	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31422034	T	T	31422034	1	4	106	0	1	0	0	0	0	0	0	0	7954	1392	48	3		3	ITGAD	16	31422034	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	38347	31422034	58932719	1519	104214											
ARMC5	79798	broad.mit.edu	37	chr16	31471201	31471201	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtgtcgtcgtctagtcCtacgccgccagtgcgcctgc	12	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31471201	T	T	31471201	3	4	106	1	0	0	0	0	1	0	0	0	958	681	24	4	358	4	ARMC5	16	31471201	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	49167	31471201	58883552	1520	104215											
ARMC5	79798	broad.mit.edu	37	chr16	31473953	31473953	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtcgtgaggccatcaaccGggcccgactgcgggatgctg	15	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31473953	C	C	31473953	3	2	106	1	0	0	0	0	1	0	0	0	958	1116	39	4	1095	4	ARMC5	16	31473953	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2752	31473953	58880800	1521	104216											
VPS35	55737	broad.mit.edu	37	chr16	46715307	46715307	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagccttgggataatgtttCcagcatactgtacaagttcg	9	9	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46715307	G	G	46715307	3	3	106	1	0	0	0	0	1	0	0	0	17330	855	30	4	2141	4	VPS35	16	46715307	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	15241354	46715307	43639446	1522	104217											
ABCC12	94160	broad.mit.edu	37	chr16	48141345	48141345	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaggtaccctgcaagaGgagcggagaggcccaagggg	18	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48141345	C	C	48141345	1	2	106	0	1	0	0	0	0	0	0	0	52	1015	35	4		4	ABCC12	16	48141345	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1426038	48141345	42213408	1523	104218											
C16orf78	123970	broad.mit.edu	37	chr16	49408055	49408055	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttactcaaggtagttgcagtAggggagagagattgaactta	13	4	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49408055	T	T	49408055	1	4	106	0	1	0	0	0	0	0	0	0	1849	435	15	5		5	C16orf78	16	49408055	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1266710	49408055	40946698	1524	104219											
CES1	1066	broad.mit.edu	37	chr16	55860292	55860292	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgccttggactgggaggtTtaagcctggaaatggacttg	15	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55860292	G	G	55860292	1	3	106	0	1	0	0	0	0	0	0	0	3299	1856	64	5		5	CES1	16	55860292	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	6452237	55860292	34494461	1525	104220											
NUP93	9688	broad.mit.edu	37	chr16	56878328	56878328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaggatggaagaacatGgaatagaggatggaagaata	16	1	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56878328	T	T	56878328	1	4	106	0	1	0	0	0	0	0	0	0	10867	1363	47	2		2	NUP93	16	56878328	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1018036	56878328	33476425	1526	104221											
CNOT1	23019	broad.mit.edu	37	chr16	58610309	58610309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcatgagccaccgcgcCcggcctttttttctcattag	9	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58610309	A	A	58610309	1	1	106	0	1	0	0	0	0	0	0	0	3649	638	22	2		2	CNOT1	16	58610309	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1731981	58610309	31744444	1527	104222											
CNOT1	23019	broad.mit.edu	37	chr16	58616700	58616700	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatcacatatactcaccagTtctttaagaacgtcaatcaa	3	11	6	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58616700	A	A	58616700	3	1	106	1	0	0	0	0	1	0	0	0	3649	1722	60	5	6471	5	CNOT1	16	58616700	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	6391	58616700	31738053	1528	104223											
CES3	23491	broad.mit.edu	37	chr16	67007029	67007029	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccagcacggcagcccgcctCtccccctgctgagactttaa	8	19	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67007029	G	G	67007029	1	3	106	0	1	0	0	0	0	0	0	0	3301	928	32	4		4	CES3	16	67007029	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	8390329	67007029	23347724	1529	104224											
C16orf70	80262	broad.mit.edu	37	chr16	67178685	67178685	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggttggaatatgggaGtggccaggccttctaggagg	19	5	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67178685	A	A	67178685	1	1	106	0	1	0	0	0	0	0	0	0	1843	1044	36	4		4	C16orf70	16	67178685	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	171656	67178685	23176068	1530	104225											
RLTPR	146206	broad.mit.edu	37	chr16	67680671	67680671	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctacaatggcttccctttccGagaggagattcagtgggtga	12	9	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67680671	A	A	67680671	3	1	106	1	0	0	0	0	1	0	0	0	13505	1058	37	4	547	4	RLTPR	16	67680671	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	501986	67680671	22674082	1531	104226											
RLTPR	146206	broad.mit.edu	37	chr16	67681405	67681405	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctcatgcctggggtctggtCcccagagactttgtccgacg	12	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67681405	G	G	67681405	1	3	106	0	1	0	0	0	0	0	0	0	13505	870	30	4		4	RLTPR	16	67681405	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	734	67681405	22673348	1532	104227											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67859197	67859197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcctgaattgggaatcgGgtttctctcttctctgagac	10	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67859197	T	T	67859197	1	4	106	0	1	0	0	0	0	0	0	0	16757	1247	43	2		2	TSNAXIP1	16	67859197	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	177792	67859197	22495556	1533	104228											
CDH1	999	broad.mit.edu	37	chr16	68849475	68849475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtagcagtgacgaatgtgGtaccttttgaggtctctctc	11	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68849475	T	T	68849475	3	4	106	1	0	0	0	0	1	0	0	0	3125	1261	44	3	1416	3	CDH1	16	68849475	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	990278	68849475	21505278	1534	104229											
HYDIN	54768	broad.mit.edu	37	chr16	70897063	70897063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaattccagctggacacGtcctgaattaatcacatcga	8	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70897063	T	T	70897063	3	4	106	1	0	0	0	0	1	0	0	0	7537	1145	40	3	3947	3	HYDIN	16	70897063	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2047588	70897063	19457690	1535	104230											
HYDIN	54768	broad.mit.edu	37	chr16	70908208	70908208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcactgctgtttctcccacCtgccaccaagtcttccatat	4	16	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70908208	A	A	70908208	3	1	106	1	0	0	0	0	1	0	0	0	7537	695	24	2	4509	2	HYDIN	16	70908208	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	11145	70908208	19446545	1536	104231											
HYDIN	54768	broad.mit.edu	37	chr16	70908693	70908693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctactgagatccattgccCtctagaagcaccctccccac	6	17	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70908693	A	A	70908693	1	1	106	0	1	0	0	0	0	0	0	0	7537	696	24	2		2	HYDIN	16	70908693	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	485	70908693	19446060	1537	104232											
HYDIN	54768	broad.mit.edu	37	chr16	71103063	71103063	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaaattgacaggcacccCctcctgctgacactggacat	8	14	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71103063	A	A	71103063	1	1	106	0	1	0	0	0	0	0	0	0	7537	638	22	2		2	HYDIN	16	71103063	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	194370	71103063	19251690	1538	104233											
HYDIN	54768	broad.mit.edu	37	chr16	71220572	71220572	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattaatcagtcagtaattcTgtttggcattctgagaatgc	8	6	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71220572	A	A	71220572	1	1	106	0	1	0	0	0	0	0	0	0	7537	1595	55	5		5	HYDIN	16	71220572	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	117509	71220572	19134181	1539	104234											
CALB2	794	broad.mit.edu	37	chr16	71411470	71411470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaacgcaattcccacactGcctcgccactggccctttcc	6	18	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71411470	T	T	71411470	1	4	106	0	1	0	0	0	0	0	0	0	2600	1334	46	3		3	CALB2	16	71411470	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	190898	71411470	18943283	1540	104235											
AP1G1	164	broad.mit.edu	37	chr16	71792426	71792426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaggtaaacttttgcctaGcttatctgtgcctgttgtat	8	8	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71792426	A	A	71792426	1	1	106	0	1	0	0	0	0	0	0	0	734	986	34	4		4	AP1G1	16	71792426	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	380956	71792426	18562327	1541	104236											
RFWD3	55159	broad.mit.edu	37	chr16	74657793	74657793	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctagcaaacaacatctaacCagcagcatgccttcaaggtt	7	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74657793	G	G	74657793	1	3	106	0	1	0	0	0	0	0	0	0	13369	609	21	4		4	RFWD3	16	74657793	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	2865367	74657793	15696960	1542	104237											
LDHD	197257	broad.mit.edu	37	chr16	75150747	75150747	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcttaaggtggcacggGctttaaggtggcccttgcag	15	10	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75150747	A	A	75150747	1	1	106	0	1	0	0	0	0	0	0	0	8775	1218	42	4		4	LDHD	16	75150747	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	492954	75150747	15204006	1543	104238											
CNTNAP4	85445	broad.mit.edu	37	chr16	76486483	76486484	+	Missense_Mutation	DNP	CC	AG	AG													ccaggagttatttagcactgCcagacttctctggagaggag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	76486484	AG	AG	76486483	3	1	106	1	0	0	0	0	1	0	0	0	3681	739	26	3	1193	3	CNTNAP4	16	76486483	Missense_Mutation	DNP	CC	TCGA-44-2656-01A-02D-0969-08	1335736	76486483	13868270	1544	104239											
CNTNAP4	85445	broad.mit.edu	37	chr16	76587152	76587152	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttcacttttcactactaAtatttcggtgtttctttgaa	4	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76587152	T	T	76587152	1	4	106	0	1	0	0	0	0	0	0	0	3681	116	4	5		5	CNTNAP4	16	76587152	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	100669	76587152	13767601	1545	104240											
ADAMTS18	170692	broad.mit.edu	37	chr16	77353734	77353734	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgagaactgaatacacaGaaggggcttacttcaaagac	9	9	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77353734	A	A	77353734	1	1	106	0	1	0	0	0	0	0	0	0	263	957	33	4		4	ADAMTS18	16	77353734	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	766582	77353734	13001019	1546	104241											
ADAMTS18	170692	broad.mit.edu	37	chr16	77359658	77359658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtctggggagtgaaagGtaaacattcaaactctttga	12	5	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77359658	T	T	77359658	1	4	106	0	1	0	0	0	0	0	0	0	263	1276	44	3		3	ADAMTS18	16	77359658	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5924	77359658	12995095	1547	104242											
MLYCD	23417	broad.mit.edu	37	chr16	83933047	83933047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcttcggcgtggaccacGgccaggtggcggagcagagc	20	11	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83933047	T	T	83933047	3	4	106	1	0	0	0	0	1	0	0	0	9731	1116	39	1	300	1	MLYCD	16	83933047	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	6573389	83933047	6421706	1548	104243											
CRISPLD2	83716	broad.mit.edu	37	chr16	84906614	84906614	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagtcgtctagcatatgccGcgccgccatccactacggga	10	16	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84906614	C	C	84906614	3	2	106	1	0	0	0	0	1	0	0	0	3915	1087	38	4	1032	4	CRISPLD2	16	84906614	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	973567	84906614	5448139	1549	104244											
FAM92B	339145	broad.mit.edu	37	chr16	85139044	85139044	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctggtctctgcctggccCcagggacacaagacgtagaa	11	13	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85139044	A	A	85139044	5	1	106	1	0	0	0	0	0	0	1	0	5710	637	22	2	504	2	FAM92B	16	85139044	Splice_Site	SNP	C	TCGA-44-2656-01A-02D-0969-08	232430	85139044	5215709	1550	104245											
FOXC2	2303	broad.mit.edu	37	chr16	86602482	86602482	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctccccggcccgctccGgcttcgcttcccagccccga	8	24	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86602482	T	T	86602482	1	4	106	0	1	0	0	0	0	0	0	0	6053	1131	39	1		1	FOXC2	16	86602482	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	1463438	86602482	3752271	1551	104246											
DEF8	54849	broad.mit.edu	37	chr16	90020841	90020841	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtctctgactgcttacgtgGacccctcctttcttcctgcc	8	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90020841	T	T	90020841	1	4	106	0	1	0	0	0	0	0	0	0	4420	1189	41	3		3	DEF8	16	90020841	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3418359	90020841	333912	1552	104247											
DEF8	54849	broad.mit.edu	37	chr16	90028405	90028405	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtgagaggtgtcacccGgccgtgcctggcaggtttct	17	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90028405	A	A	90028405	1	1	106	0	1	0	0	0	0	0	0	0	4420	1131	39	4		4	DEF8	16	90028405	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	7564	90028405	326348	1553	104248											
C16orf3	750	broad.mit.edu	37	chr16	90095676	90095676	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccacagactcagaaggcttCttcagggtccaggcaggtgg	14	11	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90095676	T	T	90095676	2	4	106	1	0	0	0	0	0	0	0	1	1826	912	32	4		4	C16orf3	16	90095676	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	67271	90095676	259077	1554	104249											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2935769	2935769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtgaatgtcctgctgtGgccgtgaggggggacgtgtg	19	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2935769	T	T	2935769	1	4	106	0	1	0	0	0	0	0	0	0	13146	1363	47	2		2	RAP1GAP2	17	2935769	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08		2935769	78259441	1555	104250											
OR3A3	8392	broad.mit.edu	37	chr17	3324705	3324705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttcagacaaggataagGgggttggggttttcatgact	13	5	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3324705	T	T	3324705	3	4	106	1	0	0	0	0	1	0	0	0	11133	1232	43	2	846	2	OR3A3	17	3324705	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	388936	3324705	77870505	1556	104251											
USP6	9098	broad.mit.edu	37	chr17	5045714	5045714	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatcccattggtatgaagGggcatatggctaaatgctat	10	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5045714	A	A	5045714	3	1	106	1	0	0	0	0	1	0	0	0	17213	1232	43	4	1797	4	USP6	17	5045714	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1721009	5045714	76149496	1557	104252											
SLC13A5	284111	broad.mit.edu	37	chr17	6597649	6597649	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccttaaaagtcaaggtcaaGagtggtggccaggtgcagtg	15	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6597649	A	A	6597649	1	1	106	0	1	0	0	0	0	0	0	0	14508	957	33	4		4	SLC13A5	17	6597649	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1551935	6597649	74597561	1558	104253											
ASGR1	432	broad.mit.edu	37	chr17	7081808	7081808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcagggcaaggtggccCtcaccttttctgagctgatg	14	10	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7081808	A	A	7081808	1	1	106	0	1	0	0	0	0	0	0	0	1043	696	24	2		2	ASGR1	17	7081808	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	484159	7081808	74113402	1559	104254											
TP53	7157	broad.mit.edu	37	chr17	7579470	7579470	+	Frame_Shift_Del	DEL	C	-	-													agctgctggtgcaggggccaCggggggagcagcctctggca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7579470	-	-	7579470	7	5	106	1	0	1	0	1	0	0	0	0	16505	536	19	0	1085	0	TP53	17	7579470	Frame_Shift_Del	DEL	C	TCGA-44-2656-01A-02D-0969-08	497662	7579470	73615740	1560	104255											
PER1	5187	broad.mit.edu	37	chr17	8047245	8047245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacctggggttagtaccCctgctacccacactgccctg	8	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8047245	A	A	8047245	1	1	106	0	1	0	0	0	0	0	0	0	11823	638	22	2		2	PER1	17	8047245	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	467775	8047245	73147965	1561	104256											
RPL26	6154	broad.mit.edu	37	chr17	8281101	8281101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaataccatttcccaaacCtggggtaggtggatgcctaa	9	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8281101	A	A	8281101	1	1	106	0	1	0	0	0	0	0	0	0	13684	696	24	2		2	RPL26	17	8281101	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	233856	8281101	72914109	1562	104257											
GLP2R	9340	broad.mit.edu	37	chr17	9756594	9756594	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catagttctggggcctccggGggctcatgtccatctccatc	11	14	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9756594	A	A	9756594	1	1	106	0	1	0	0	0	0	0	0	0	6517	1247	43	4		4	GLP2R	17	9756594	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1475493	9756594	71438616	1563	104258											
MYH13	8735	broad.mit.edu	37	chr17	10233640	10233640	+	Intron	DEL	G	-	-													aaatcccaagactaaaagcaGgaagtgacaatcagctgcta							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10233640	-	-	10233640	6	5	106	0	1	1	0	1	0	0	0	0	10126	1015	35	0		0	MYH13	17	10233640	Intron	DEL	G	TCGA-44-2656-01A-02D-0969-08	477046	10233640	70961570	1564	104259											
MYH1	4619	broad.mit.edu	37	chr17	10399714	10399714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatctcagcatccagtgtGctctgcatggactccacgat	9	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10399714	T	T	10399714	3	4	106	1	0	0	0	0	1	0	0	0	10123	1310	46	3	1038	3	MYH1	17	10399714	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	166074	10399714	70795496	1565	104260											
MYH2	4620	broad.mit.edu	37	chr17	10446623	10446623	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggtgtatctcctatttTataagtagaagagttttatc	7	4	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10446623	C	C	10446623	1	2	106	0	1	0	0	0	0	0	0	0	10129	1769	61	5		5	MYH2	17	10446623	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	46909	10446623	70748587	1566	104261											
MYH2	4620	broad.mit.edu	37	chr17	10448802	10448802	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taggggttgacagtgacacaGaagagacctgaataggtcta	13	6	1	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10448802	A	A	10448802	2	1	106	1	0	0	0	0	0	0	0	1	10129	933	33	4		4	MYH2	17	10448802	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	2179	10448802	70746408	1567	104262											
DNAH9	1770	broad.mit.edu	37	chr17	11726350	11726350	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcatagcacctctgcccAggtgagcaatgtcccgctcc	10	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11726350	T	T	11726350	3	4	106	1	0	0	0	0	1	0	0	0	4648	202	7	5	9435	5	DNAH9	17	11726350	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1277548	11726350	69468860	1568	104263											
DNAH9	1770	broad.mit.edu	37	chr17	11783613	11783613	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttcctagaatttcctctCttcagttcatgtcaagtagc	5	12	5	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11783613	A	A	11783613	1	1	106	0	1	0	0	0	0	0	0	0	4648	928	32	3		3	DNAH9	17	11783613	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	57263	11783613	69411597	1569	104264											
DNAH9	1770	broad.mit.edu	37	chr17	11840935	11840935	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccattttggcagtacacagCatagacaacacacaaagcac	7	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11840935	G	G	11840935	1	3	106	0	1	0	0	0	0	0	0	0	4648	725	25	4		4	DNAH9	17	11840935	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	57322	11840935	69354275	1570	104265											
MPRIP	23164	broad.mit.edu	37	chr17	16978980	16978980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacctgttctctcttctGggttgaaggctgctggtgac	12	10	3	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16978980	T	T	16978980	1	4	106	0	1	0	0	0	0	0	0	0	9837	1363	47	2		2	MPRIP	17	16978980	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5138045	16978980	64216230	1571	104266											
MPRIP	23164	broad.mit.edu	37	chr17	17076222	17076222	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgtgtctttgcagagGcctccagaagtggggcctgg	14	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17076222	A	A	17076222	1	1	106	0	1	0	0	0	0	0	0	0	9837	1218	42	4		4	MPRIP	17	17076222	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	97242	17076222	64118988	1572	104267											
MAP2K3	5606	broad.mit.edu	37	chr17	21201787	21201787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagccacccgcacccaacCccacgtgagtctgcctcagt	7	20	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21201787	A	A	21201787	3	1	106	1	0	0	0	0	1	0	0	0	9330	623	22	2	118	2	MAP2K3	17	21201787	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4125565	21201787	59993423	1573	104268											
KCNJ12	3768	broad.mit.edu	37	chr17	21318931	21318931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctcgctggccttccttGcctcctggctgctgttcggc	10	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21318931	T	T	21318931	3	4	106	1	0	0	0	0	1	0	0	0	8116	1319	46	3	279	3	KCNJ12	17	21318931	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	117144	21318931	59876279	1574	104269											
LGALS9	3965	broad.mit.edu	37	chr17	25967657	25967657	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgccttccacttcaaccCtcggtttgaagatggagggt	10	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25967657	T	T	25967657	3	4	106	1	0	0	0	0	1	0	0	0	8820	681	24	4	201	4	LGALS9	17	25967657	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4648726	25967657	55227553	1575	104270											
NF1	4763	broad.mit.edu	37	chr17	29562738	29562739	+	Frame_Shift_Del	DEL	CT	-	-													attggcagactccatgcagaCtctcttccgaggcaacagct							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29562739	-	-	29562738	7	5	106	1	0	1	0	1	0	0	0	0	10451	565	20	0	3989	0	NF1	17	29562738	Frame_Shift_Del	DEL	CT	TCGA-44-2656-01A-02D-0969-08	3595081	29562738	51632472	1576	104271											
MYO1D	4642	broad.mit.edu	37	chr17	31105502	31105502	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attagagtgctcttacctttCaacctctgctctctgactgg	7	12	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31105502	A	A	31105502	4	1	106	1	0	0	0	0	0	1	0	0	10165	835	29	3	2706	3	MYO1D	17	31105502	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1542764	31105502	50089708	1577	104272											
ACCN1	40	broad.mit.edu	37	chr17	32366497	32366497	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctttgcagcactgccaTctaaaccatagaggggctgt	9	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32366497	A	A	32366497	1	1	106	0	1	0	0	0	0	0	0	0	128	1450	50	5		5	ACCN1	17	32366497	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1260995	32366497	48828713	1578	104273											
UNC45B	146862	broad.mit.edu	37	chr17	33513590	33513590	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtcttagacagcgaccctCagggatgctgggagtggtcc	15	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33513590	A	A	33513590	1	1	106	0	1	0	0	0	0	0	0	0	17115	841	29	3		3	UNC45B	17	33513590	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	1147093	33513590	47681620	1579	104274											
TBC1D3C	414060	broad.mit.edu	37	chr17	34641437	34641437	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggattctaatctgtctgctCcttgttctacagattccaaa	7	10	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34641437	A	A	34641437	1	1	106	0	1	0	0	0	0	0	0	0	15741	870	30	3		3	TBC1D3C	17	34641437	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1127847	34641437	46553773	1580	104275											
PIP4K2B	8396	broad.mit.edu	37	chr17	36935738	36935738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtcaggcggtacatgccCaggaactgtggcaaaagcgt	14	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36935738	T	T	36935738	2	4	106	1	0	0	0	0	0	0	0	1	12032	581	21	4		4	PIP4K2B	17	36935738	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2294301	36935738	44259472	1581	104276											
MED1	5469	broad.mit.edu	37	chr17	37561572	37561572	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attctttgatctgggatgaaGacagaaagagagaaaagctt	11	4	2	6			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37561572	C	C	37561572	1	2	106	0	1	0	0	0	0	0	0	0	9518	957	33	4		4	MED1	17	37561572	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	625834	37561572	43633638	1582	104277											
STARD3	10948	broad.mit.edu	37	chr17	37814806	37814806	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgggtaggggggtgcagcgAgggttacccacagccccaag	18	11	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37814806	T	T	37814806	1	4	106	0	1	0	0	0	0	0	0	0	15375	319	11	5		5	STARD3	17	37814806	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	253234	37814806	43380404	1583	104278											
ERBB2	2064	broad.mit.edu	37	chr17	37868208	37868208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctttctacggacgtgggatCctgcaccctcgtctgccccc	9	18	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37868208	T	T	37868208	3	4	106	1	0	0	0	0	1	0	0	0	5248	855	30	4	959	4	ERBB2	17	37868208	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	53402	37868208	43327002	1584	104279											
NKIRAS2	28511	broad.mit.edu	37	chr17	40175884	40175884	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccccctcagccggaagaaCaagggcagcggctccttgga	12	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40175884	T	T	40175884	2	4	106	1	0	0	0	0	0	0	0	1	10540	477	17	4		4	NKIRAS2	17	40175884	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2307676	40175884	41019326	1585	104280											
CDC27	996	broad.mit.edu	37	chr17	45215952	45215952	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accacacattctaggactttCtcttcctctctgagtccctg	5	15	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45215952	A	A	45215952	1	1	106	0	1	0	0	0	0	0	0	0	3096	928	32	3		3	CDC27	17	45215952	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5040068	45215952	35979258	1586	104281											
ITGB3	3690	broad.mit.edu	37	chr17	45366890	45366890	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtagagatggggtcttgcTatgttgcccaggctcttgtc	13	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45366890	C	C	45366890	1	2	106	0	1	0	0	0	0	0	0	0	7965	1537	53	5		5	ITGB3	17	45366890	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	150938	45366890	35828320	1587	104282											
SNX11	29916	broad.mit.edu	37	chr17	46190772	46190772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggtttggtgtgagtttGctcttgcttccttcttgggt	13	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46190772	T	T	46190772	1	4	106	0	1	0	0	0	0	0	0	0	14996	1334	46	3		3	SNX11	17	46190772	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	823882	46190772	35004438	1588	104283											
HOXB13	10481	broad.mit.edu	37	chr17	46805162	46805162	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttcagatagcacccagctCaggcccctcacactgacctc	7	18	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46805162	A	A	46805162	1	1	106	0	1	0	0	0	0	0	0	0	7367	841	29	3		3	HOXB13	17	46805162	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	614390	46805162	34390048	1589	104284											
XYLT2	64132	broad.mit.edu	37	chr17	48431645	48431645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtggcagaggcagagtgGggacccacgagcatggagct	17	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48431645	T	T	48431645	1	4	106	0	1	0	0	0	0	0	0	0	17591	1247	43	2		2	XYLT2	17	48431645	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1626483	48431645	32763565	1590	104285											
LRRC59	55379	broad.mit.edu	37	chr17	48474405	48474405	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgacacgtgtacatcccgGgaagaaccttgggctggacg	14	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48474405	C	C	48474405	1	2	106	0	1	0	0	0	0	0	0	0	9102	1247	43	4		4	LRRC59	17	48474405	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	42760	48474405	32720805	1591	104286											
CA10	56934	broad.mit.edu	37	chr17	49731210	49731210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatattgaggaacaatttGgaagacaattttaattgaag	9	2	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49731210	T	T	49731210	1	4	106	0	1	0	0	0	0	0	0	0	2537	1363	47	2		2	CA10	17	49731210	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1256805	49731210	31464000	1592	104287											
CUEDC1	404093	broad.mit.edu	37	chr17	55948538	55948538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggcccaggccccctcCcacaatctgttttttcaccc	8	17	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55948538	A	A	55948538	1	1	106	0	1	0	0	0	0	0	0	0	4085	638	22	2		2	CUEDC1	17	55948538	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	6217328	55948538	25246672	1593	104288											
EPX	8288	broad.mit.edu	37	chr17	56270730	56270730	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactcctcctctcctgggcAgcatcaagcagcggcttcgc	9	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56270730	T	T	56270730	5	4	106	1	0	0	0	0	0	0	1	0	5242	202	7	5	179	5	EPX	17	56270730	Splice_Site	SNP	A	TCGA-44-2656-01A-02D-0969-08	322192	56270730	24924480	1594	104289											
BZRAP1	9256	broad.mit.edu	37	chr17	56393539	56393539	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggagagtgacctacactCcacttccatgtcctgtcttc	9	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56393539	A	A	56393539	1	1	106	0	1	0	0	0	0	0	0	0	1587	870	30	3		3	BZRAP1	17	56393539	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	122809	56393539	24801671	1595	104290											
RPS6KB1	6198	broad.mit.edu	37	chr17	58009173	58009173	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttcaaagccccaaattcAtctctctattttgtatattt	2	9	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58009173	T	T	58009173	1	4	106	0	1	0	0	0	0	0	0	0	13767	232	8	5		5	RPS6KB1	17	58009173	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1615634	58009173	23186037	1596	104291											
USP32	84669	broad.mit.edu	37	chr17	58289532	58289533	+	Intron	INS	-	A	A													ttcgattgctttttttttttINSaaagacatcttattcctaaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58289533	A	A	58289532	6	5	106	0	1	1	1	0	0	0	0	0	17190	1769	61	0		0	USP32	17	58289532	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	280359	58289532	22905678	1597	104292											
BCAS3	54828	broad.mit.edu	37	chr17	59024873	59024873	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagggaaaaattccgttttGacccagtaaatacataagca	7	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59024873	T	T	59024873	1	4	106	0	1	0	0	0	0	0	0	0	1357	1305	45	3		3	BCAS3	17	59024873	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	735341	59024873	22170337	1598	104293											
BRIP1	83990	broad.mit.edu	37	chr17	59760806	59760806	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaattttactttcttcaaTatgcagaattccattcaact	2	9	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59760806	C	C	59760806	3	2	106	1	0	0	0	0	1	0	0	0	1523	1406	49	5	152	5	BRIP1	17	59760806	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	735933	59760806	21434404	1599	104294											
INTS2	57508	broad.mit.edu	37	chr17	59962347	59962347	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagaagaatatgatttGggctttctttgcatggcagc	11	5	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59962347	A	A	59962347	2	1	106	1	0	0	0	0	0	0	0	1	7848	1335	47	4		4	INTS2	17	59962347	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	201541	59962347	21232863	1600	104295											
STRADA	92335	broad.mit.edu	37	chr17	61790733	61790733	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcagagccaagagcccaccCtccctccatgtgacacactc	6	18	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61790733	T	T	61790733	1	4	106	0	1	0	0	0	0	0	0	0	15442	696	24	4		4	STRADA	17	61790733	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1828386	61790733	19404477	1601	104296											
FTSJ3	117246	broad.mit.edu	37	chr17	61901977	61901977	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagggctcctggcccccGtgcctaccccactccatacc	7	22	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61901977	A	A	61901977	1	1	106	0	1	0	0	0	0	0	0	0	6149	1160	40	4		4	FTSJ3	17	61901977	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	111244	61901977	19293233	1602	104297											
CSH1	1442	broad.mit.edu	37	chr17	61973647	61973647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggagaggaagaggccagcGctctccctgctccaggagct	14	14	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61973647	A	A	61973647	1	1	106	0	1	0	0	0	0	0	0	0	3974	1102	38	4		4	CSH1	17	61973647	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	71670	61973647	19221563	1603	104298											
GH1	2688	broad.mit.edu	37	chr17	61995316	61995316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgggcattggctgtgctGcccgggggctctgactacag	17	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61995316	T	T	61995316	1	4	106	0	1	0	0	0	0	0	0	0	6431	1334	46	3		3	GH1	17	61995316	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	21669	61995316	19199894	1604	104299											
SCN4A	6329	broad.mit.edu	37	chr17	62018710	62018710	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcggttcctgcagggtgtcCacgaagtctgagaggcggct	16	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62018710	G	G	62018710	2	3	106	1	0	0	0	0	0	0	0	1	14033	581	21	4		4	SCN4A	17	62018710	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	23394	62018710	19176500	1605	104300											
AXIN2	8313	broad.mit.edu	37	chr17	63553908	63553908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcatcagcccacccgccCccgtcaaagtcttacctgta	6	18	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63553908	A	A	63553908	1	1	106	0	1	0	0	0	0	0	0	0	1242	638	22	2		2	AXIN2	17	63553908	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1535198	63553908	17641302	1606	104301											
BPTF	2186	broad.mit.edu	37	chr17	65916018	65916018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctgttaattaagtcagGtgtttccaaaagtttattcc	7	7	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65916018	T	T	65916018	1	4	106	0	1	0	0	0	0	0	0	0	1504	1276	44	3		3	BPTF	17	65916018	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2362110	65916018	15279192	1607	104302											
ABCA8	10351	broad.mit.edu	37	chr17	66920778	66920778	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaaagggaacactgcttGcctcaggtgctatctcttag	9	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66920778	A	A	66920778	1	1	106	0	1	0	0	0	0	0	0	0	38	1334	46	4		4	ABCA8	17	66920778	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1004760	66920778	14274432	1608	104303											
ABCA9	10350	broad.mit.edu	37	chr17	67028513	67028513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgacattaaacctgaacCcacattatcatattaaggtc	4	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67028513	A	A	67028513	1	1	106	0	1	0	0	0	0	0	0	0	39	638	22	2		2	ABCA9	17	67028513	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	107735	67028513	14166697	1609	104304											
ABCA9	10350	broad.mit.edu	37	chr17	67039769	67039769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaaaaatcagttgcaaCtcctccttgggcaacaaaag	7	9	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67039769	A	A	67039769	3	1	106	1	0	0	0	0	1	0	0	0	39	565	20	3	4349	3	ABCA9	17	67039769	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	11256	67039769	14155441	1610	104305											
ABCA10	10349	broad.mit.edu	37	chr17	67151277	67151277	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttgcagttatgactggttCctggaaaacatgacaaagca	10	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67151277	A	A	67151277	4	1	106	1	0	0	0	0	0	1	0	0	29	869	30	3	1094	3	ABCA10	17	67151277	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	111508	67151277	14043933	1611	104306											
TTYH2	94015	broad.mit.edu	37	chr17	72245630	72245630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagatggcggaggtggcaGggccttgcttgcctcactgt	15	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72245630	T	T	72245630	1	4	106	0	1	0	0	0	0	0	0	0	16866	1015	35	2		2	TTYH2	17	72245630	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5094353	72245630	8949580	1612	104307											
KIF19	124602	broad.mit.edu	37	chr17	72338734	72338734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtgctgtgccccgcctGtgtcccggcccctgacaggc	13	18	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72338734	T	T	72338734	1	4	106	0	1	0	0	0	0	0	0	0	8352	1392	48	3		3	KIF19	17	72338734	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	93104	72338734	8856476	1613	104308											
ITGB4	3691	broad.mit.edu	37	chr17	73724342	73724342	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatgaacctttgtccagCatgcaaagcgttaacctccc	8	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73724342	T	T	73724342	1	4	106	0	1	0	0	0	0	0	0	0	7967	725	25	4		4	ITGB4	17	73724342	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1385608	73724342	7470868	1614	104309											
EXOC7	23265	broad.mit.edu	37	chr17	74099687	74099687	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccctttccctcacctcctCcccagcctccccaggcccac	4	26	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74099687	A	A	74099687	1	1	106	0	1	0	0	0	0	0	0	0	5352	870	30	3		3	EXOC7	17	74099687	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	375345	74099687	7095523	1615	104310											
MGAT5B	146664	broad.mit.edu	37	chr17	74899482	74899482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctggggctgaggggtgGggatgtctacagctagggcc	20	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74899482	T	T	74899482	1	4	106	0	1	0	0	0	0	0	0	0	9642	1247	43	2		2	MGAT5B	17	74899482	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	799795	74899482	6295728	1616	104311											
TNRC6C	57690	broad.mit.edu	37	chr17	76047196	76047196	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggggaggagctgcttctGtgaaacagacaggaacaggg	16	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76047196	A	A	76047196	3	1	106	1	0	0	0	0	1	0	0	0	16465	1377	48	4	2055	4	TNRC6C	17	76047196	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1147714	76047196	5148014	1617	104312											
TMC6	11322	broad.mit.edu	37	chr17	76113395	76113395	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgaccttgcgctggccCcgcaccacctggatgttgag	12	14	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76113395	A	A	76113395	2	1	106	1	0	0	0	0	0	0	0	1	16112	610	22	2		2	TMC6	17	76113395	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	66199	76113395	5081815	1618	104313											
DNAH17	8632	broad.mit.edu	37	chr17	76430021	76430024	+	Intron	DEL	GGAG	-	-													ggaaggaaggagggagggaaGgagggagggaaggagggagg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76430024	-	-	76430021	6	5	106	0	1	1	0	1	0	0	0	0	4641	1015	35	0		0	DNAH17	17	76430021	Intron	DEL	GGAG	TCGA-44-2656-01A-02D-0969-08	316626	76430021	4765189	1619	104314											
LGALS3BP	3959	broad.mit.edu	37	chr17	76970703	76970703	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgtgggggggtggtgctggGaggggcaggggccacgggac	26	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76970703	A	A	76970703	1	1	106	0	1	0	0	0	0	0	0	0	8816	1189	41	4		4	LGALS3BP	17	76970703	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	540682	76970703	4224507	1620	104315											
C1QTNF1	114897	broad.mit.edu	37	chr17	77040266	77040266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaggctgagcctgggcCttggggcccctgggggagct	19	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77040266	A	A	77040266	1	1	106	0	1	0	0	0	0	0	0	0	1982	696	24	2		2	C1QTNF1	17	77040266	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	69563	77040266	4154944	1621	104316											
RPTOR	57521	broad.mit.edu	37	chr17	78854319	78854319	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagcacgctctccacggGcttgggactcagcactcgcc	13	16	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78854319	A	A	78854319	1	1	106	0	1	0	0	0	0	0	0	0	13776	1218	42	4		4	RPTOR	17	78854319	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1814053	78854319	2340891	1622	104317											
AZI1	22994	broad.mit.edu	37	chr17	79169609	79169609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagccgggcttgggacgCcgtgcagtagggagcaaagc	18	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79169609	A	A	79169609	1	1	106	0	1	0	0	0	0	0	0	0	1245	754	26	3		3	AZI1	17	79169609	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	315290	79169609	2025601	1623	104318											
SLC38A10	124565	broad.mit.edu	37	chr17	79250740	79250740	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacccagcagcacacagggCcagggccatgcctgtggcag	13	14	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79250740	G	G	79250740	1	3	106	0	1	0	0	0	0	0	0	0	14716	754	26	4		4	SLC38A10	17	79250740	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	81131	79250740	1944470	1624	104319											
ACTG1	71	broad.mit.edu	37	chr17	79479156	79479156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtccttctggcccatgcCcaccatgacgccctgcaggg	12	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79479156	A	A	79479156	3	1	106	1	0	0	0	0	1	0	0	0	196	623	22	2	1007	2	ACTG1	17	79479156	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	228416	79479156	1716054	1625	104320											
P4HB	5034	broad.mit.edu	37	chr17	79804555	79804555	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggagacggctggcctctgCctccagccctgactttgctc	12	16	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79804555	G	G	79804555	1	3	106	0	1	0	0	0	0	0	0	0	11453	754	26	4		4	P4HB	17	79804555	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	325399	79804555	1390655	1626	104321											
COLEC12	81035	broad.mit.edu	37	chr18	321620	321620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcaccctttcataggaCataagctggcagctccctct	6	17	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	321620	A	A	321620	1	1	106	0	1	0	0	0	0	0	0	0	3744	493	17	3		3	COLEC12	18	321620	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08		321620	77755628	1627	104322											
METTL4	64863	broad.mit.edu	37	chr18	2566948	2566948	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacatcaaacagttcagGtcgaaaaacaaattttcgtg	9	7	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2566948	A	A	2566948	3	1	106	1	0	0	0	0	1	0	0	0	9595	1261	44	4	1182	4	METTL4	18	2566948	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2245328	2566948	75510300	1628	104323											
EMILIN2	84034	broad.mit.edu	37	chr18	2891215	2891215	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgggagcagctacctgGgagtgatagagctcataggg	15	7	1	2	rs150535335	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2891215	T	T	2891215	4	4	106	1	0	0	0	0	0	1	0	0	5136	1233	43	2	1104	2	EMILIN2	18	2891215	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	324267	2891215	75186033	1629	104324											
LPIN2	9663	broad.mit.edu	37	chr18	2922223	2922223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaacacaccctgttagcCcacatgttctggctaaggga	9	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2922223	A	A	2922223	1	1	106	0	1	0	0	0	0	0	0	0	9006	638	22	2		2	LPIN2	18	2922223	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	31008	2922223	75155025	1630	104325											
EPB41L3	23136	broad.mit.edu	37	chr18	5630369	5630369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgccaagaagagaaaggCgctcacctgagtcaccgaag	13	11	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5630369	A	A	5630369	1	1	106	0	1	0	0	0	0	0	0	0	5196	783	27	3		3	EPB41L3	18	5630369	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2708146	5630369	72446879	1631	104326											
LAMA1	284217	broad.mit.edu	37	chr18	6976126	6976126	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcatttagtgacacacacCggcagctcaccagcagctca	7	15	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6976126	G	G	6976126	1	3	106	0	1	0	0	0	0	0	0	0	8677	667	23	4		4	LAMA1	18	6976126	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1345757	6976126	71101122	1632	104327											
ROCK1	6093	broad.mit.edu	37	chr18	18619672	18619672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtcagcatagtatcagcCcaaatagaaaatatgttaaa	6	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18619672	A	A	18619672	1	1	106	0	1	0	0	0	0	0	0	0	13628	638	22	2		2	ROCK1	18	18619672	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	11643546	18619672	59457576	1633	104328											
DSC2	1824	broad.mit.edu	37	chr18	28654570	28654570	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccacatggtgaattttctCctatttcatacaaaaaaaaa	3	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28654570	A	A	28654570	1	1	106	0	1	0	0	0	0	0	0	0	4806	870	30	3		3	DSC2	18	28654570	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	10034898	28654570	49422678	1634	104329											
DSC2	1824	broad.mit.edu	37	chr18	28654614	28654614	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatcgcagacatcctgatgTtgaaaaggacaaagcaattt	9	7	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28654614	A	A	28654614	1	1	106	0	1	0	0	0	0	0	0	0	4806	1740	60	5		5	DSC2	18	28654614	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	44	28654614	49422634	1635	104330											
DSG1	1828	broad.mit.edu	37	chr18	28934274	28934274	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcagaaagcatatgcttaCgcagatgaagatgaaggacg	11	6	1	5	rs146192657	byFrequency;by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28934274	A	A	28934274	4	1	106	1	0	0	0	0	0	1	0	0	4816	547	19	3	2173	3	DSG1	18	28934274	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	279660	28934274	49142974	1636	104331											
DSG3	1830	broad.mit.edu	37	chr18	29040749	29040749	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaagtagtttccatttatAattctttgggattaattatt	5	4	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29040749	T	T	29040749	1	4	106	0	1	0	0	0	0	0	0	0	4818	377	13	5		5	DSG3	18	29040749	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	106475	29040749	49036499	1637	104332											
DSG3	1830	broad.mit.edu	37	chr18	29046538	29046538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggtatatgttagagtacCcgatttcaatgacaattgtc	8	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29046538	A	A	29046538	3	1	106	1	0	0	0	0	1	0	0	0	4818	623	22	2	1499	2	DSG3	18	29046538	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	5789	29046538	49030710	1638	104333											
ASXL3	80816	broad.mit.edu	37	chr18	31323228	31323228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagctcaaaggaagggcCtccaaacttagaagtctctt	9	11	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323228	A	A	31323228	3	1	106	1	0	0	0	0	1	0	0	0	1072	681	24	2	3462	2	ASXL3	18	31323228	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2276690	31323228	46754020	1639	104334											
DTNA	1837	broad.mit.edu	37	chr18	32446246	32446246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttctttttcaatgtagtGcttgaattgagatatataaa	7	4	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32446246	A	A	32446246	1	1	106	0	1	0	0	0	0	0	0	0	4828	1334	46	4		4	DTNA	18	32446246	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1123018	32446246	45631002	1640	104335											
MOCOS	55034	broad.mit.edu	37	chr18	33784959	33784960	+	Intron	INS	-	AAAAA	AAAAA													agtgagtgagaccgtgtctcINSaaaaaaaaaaaaaaaaaaaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAAAA	33784960	AAAAA	AAAAA	33784959	6	5	106	0	1	1	1	0	0	0	0	0	9783	841	29	0		0	MOCOS	18	33784959	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	1338713	33784959	44292289	1641	104336											
RIT2	6014	broad.mit.edu	37	chr18	40695491	40695491	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttctacctccatcttaccCgagggaccggaggaaaaaaa	8	11	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40695491	G	G	40695491	1	3	106	0	1	0	0	0	0	0	0	0	13498	667	23	4		4	RIT2	18	40695491	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	6910532	40695491	37381757	1642	104337											
SETBP1	26040	broad.mit.edu	37	chr18	42533120	42533120	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcggggatggtggcaGcacgagatcagagaacctgg	18	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42533120	C	C	42533120	3	2	106	1	0	0	0	0	1	0	0	0	14242	971	34	4	4018	4	SETBP1	18	42533120	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1837629	42533120	35544128	1643	104338											
PIAS2	9063	broad.mit.edu	37	chr18	44426603	44426603	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgaagccaacagcttaaGaaaaaacacagaaagtcaac	7	9	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44426603	C	C	44426603	1	2	106	0	1	0	0	0	0	0	0	0	11971	957	33	4		4	PIAS2	18	44426603	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1893483	44426603	33650645	1644	104339											
MYO5B	4645	broad.mit.edu	37	chr18	47373438	47373438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaaggaaggggtgtggGggttgtgctggggatggaga	24	1	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47373438	A	A	47373438	1	1	106	0	1	0	0	0	0	0	0	0	10173	1247	43	4		4	MYO5B	18	47373438	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2946835	47373438	30703810	1645	104340											
DCC	1630	broad.mit.edu	37	chr18	50942430	50942430	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagaactgttggtttgAtatgtcagctttcttgctag	9	5	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50942430	G	G	50942430	1	3	106	0	1	0	0	0	0	0	0	0	4315	348	12	5		5	DCC	18	50942430	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	3568992	50942430	27134818	1646	104341											
TCF4	6925	broad.mit.edu	37	chr18	52927071	52927071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttataggaatgttaaagCtttgggatttggggggaagt	15	2	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52927071	A	A	52927071	1	1	106	0	1	0	0	0	0	0	0	0	15817	812	28	3		3	TCF4	18	52927071	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1984641	52927071	25150177	1647	104342											
ST8SIA3	51046	broad.mit.edu	37	chr18	55021552	55021552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtaccagccgccctcgccCcagccgctgcactttaatgg	10	18	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55021552	A	A	55021552	1	1	106	0	1	0	0	0	0	0	0	0	15351	638	22	2		2	ST8SIA3	18	55021552	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2094481	55021552	23055696	1648	104343											
ALPK2	115701	broad.mit.edu	37	chr18	56203934	56203934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttctttcctcttgtgcaGcagatgtcgtaggcaaactt	9	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56203934	T	T	56203934	3	4	106	1	0	0	0	0	1	0	0	0	545	971	34	3	3063	3	ALPK2	18	56203934	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1182382	56203934	21873314	1649	104344											
ALPK2	115701	broad.mit.edu	37	chr18	56247124	56247124	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactggaaagctgtgggctgGgttgtttgttggccacggca	16	8	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56247124	C	C	56247124	3	2	106	1	0	0	0	0	1	0	0	0	545	1232	43	4	5668	4	ALPK2	18	56247124	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	43190	56247124	21830124	1650	104345											
RAX	30062	broad.mit.edu	37	chr18	56940111	56940111	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaactcctaagctcgggCgcccgaacggcctcgcacag	12	17	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56940111	T	T	56940111	1	4	106	0	1	0	0	0	0	0	0	0	13204	783	27	4		4	RAX	18	56940111	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	692987	56940111	21137137	1651	104346											
KIAA1468	57614	broad.mit.edu	37	chr18	59942667	59942667	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtatggtgttgtccatacTtcagcactcgtgaggtgtac	12	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59942667	A	A	59942667	2	1	106	1	0	0	0	0	0	0	0	1	8306	1596	56	5		5	KIAA1468	18	59942667	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	3002556	59942667	18134581	1652	104347											
SERPINB3	6317	broad.mit.edu	37	chr18	61328498	61328498	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaagcatcagattcctGtcagaatgactttaataaat	7	6	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61328498	C	C	61328498	1	2	106	0	1	0	0	0	0	0	0	0	14215	1392	48	4		4	SERPINB3	18	61328498	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1385831	61328498	16748750	1653	104348											
NETO1	81832	broad.mit.edu	37	chr18	70423369	70423369	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggcagaagaatgtgttGccttcacaaggagctaaaaa	10	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70423369	T	T	70423369	2	4	106	1	0	0	0	0	0	0	0	1	10434	1306	46	3		3	NETO1	18	70423369	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	9094871	70423369	7653879	1654	104349											
ZNF236	7776	broad.mit.edu	37	chr18	74587634	74587635	+	Intron	DNP	GG	TT	TT													ctcagaggtaaacacgggttGggggcataagcggtatttca							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	74587635	TT	TT	74587634	1	4	106	0	1	0	0	0	0	0	0	0	17915	1363	47	2		2	ZNF236	18	74587634	Intron	DNP	GG	TCGA-44-2656-01A-02D-0969-08	4164265	74587634	3489614	1655	104350											
ZNF236	7776	broad.mit.edu	37	chr18	74672732	74672732	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacgggggagcggccctaCaagtgtgcctactgcgtcat	13	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74672732	G	G	74672732	4	3	106	1	0	0	0	0	0	1	0	0	17915	489	17	4	5452	4	ZNF236	18	74672732	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	85098	74672732	3404516	1656	104351											
MBD3	53615	broad.mit.edu	37	chr19	1581088	1581088	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggggaccaggccaaggggcTacctgatgtcctcgtcggtc	15	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1581088	A	A	1581088	1	1	106	0	1	0	0	0	0	0	0	0	9436	1537	53	5		5	MBD3	19	1581088	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08		1581088	57547895	1657	104352											
NCLN	56926	broad.mit.edu	37	chr19	3193456	3193456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgcagggacggggcccGtgggcgtgggtgtggggagg	26	7	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3193456	T	T	3193456	1	4	106	0	1	0	0	0	0	0	0	0	10322	1160	40	3		3	NCLN	19	3193456	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1612368	3193456	55935527	1658	104353											
TBXA2R	6915	broad.mit.edu	37	chr19	3600658	3600658	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggagccctgagggatcagtCaccaccccatcaggccgatg	12	15	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3600658	A	A	3600658	1	1	106	0	1	0	0	0	0	0	0	0	15785	841	29	3		3	TBXA2R	19	3600658	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	407202	3600658	55528325	1659	104354											
ITGB1BP3	27231	broad.mit.edu	37	chr19	3939950	3939950	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctgaccgtcccgtatgaaGagtgcaagtggaggagaagg	15	8	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3939950	T	T	3939950	4	4	106	1	0	0	0	0	0	1	0	0	7963	943	33	3	394	3	ITGB1BP3	19	3939950	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	339292	3939950	55189033	1660	104355											
PTPRS	5802	broad.mit.edu	37	chr19	5239112	5239113	+	Intron	DEL	GA	-	-													aaggacagagagggatggggGagagagagagagagacagaa					rs36155090		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5239113	-	-	5239112	6	5	106	0	1	1	0	1	0	0	0	0	12919	1189	41	0		0	PTPRS	19	5239112	Intron	DEL	GA	TCGA-44-2656-01A-02D-0969-08	1299162	5239112	53889871	1661	104356											
VAV1	7409	broad.mit.edu	37	chr19	6837126	6837126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggtcctgggaggatggaCagacttggaaagacaccccc	15	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6837126	A	A	6837126	1	1	106	0	1	0	0	0	0	0	0	0	17258	493	17	3		3	VAV1	19	6837126	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1598014	6837126	52291857	1662	104357											
MUC16	94025	broad.mit.edu	37	chr19	9038273	9038273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggggctgctctgaggctgTggctgggcacgtagggaggg	21	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9038273	A	A	9038273	1	1	106	0	1	0	0	0	0	0	0	0	10067	1711	59	5		5	MUC16	19	9038273	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2201147	9038273	50090710	1663	104358											
MUC16	94025	broad.mit.edu	37	chr19	9047921	9047921	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccaggatgagcgacccatGagtctatggtctctggttga	12	10	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9047921	T	T	9047921	4	4	106	1	0	0	0	0	0	1	0	0	10067	1294	45	3	10133	3	MUC16	19	9047921	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	9648	9047921	50081062	1664	104359											
ILF3	3609	broad.mit.edu	37	chr19	10793909	10793909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctcatctccgagaccgggGgcagccacgacaagcgcttc	12	15	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10793909	C	C	10793909	3	2	106	1	0	0	0	0	1	0	0	0	7782	1232	43	4	1707	4	ILF3	19	10793909	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1745988	10793909	48335074	1665	104360											
QTRT1	81890	broad.mit.edu	37	chr19	10822872	10822872	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgtgcctggcttcgccatcGggggcctgagcgggggtgag	19	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10822872	C	C	10822872	3	2	106	1	0	0	0	0	1	0	0	0	12993	1116	39	4	704	4	QTRT1	19	10822872	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	28963	10822872	48306111	1666	104361											
SMARCA4	6597	broad.mit.edu	37	chr19	11145653	11145653	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcggaagccgcgcctcatgGaggaggacgagctcccctcg	15	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11145653	T	T	11145653	4	4	106	1	0	0	0	0	0	1	0	0	14884	1175	41	3	4125	3	SMARCA4	19	11145653	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	322781	11145653	47983330	1667	104362											
CACNA1A	773	broad.mit.edu	37	chr19	13445186	13445186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggccccaggatgaaagggCctcacctgcttttgagatcc	12	12	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13445186	T	T	13445186	1	4	106	0	1	0	0	0	0	0	0	0	2564	754	26	4		4	CACNA1A	19	13445186	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2299533	13445186	45683797	1668	104363											
IL27RA	9466	broad.mit.edu	37	chr19	14153294	14153294	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagctgaagaccatacccctGacccctgttgagatccaaga	9	13	0	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14153294	T	T	14153294	2	4	106	1	0	0	0	0	0	0	0	1	7751	1277	45	3		3	IL27RA	19	14153294	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	708108	14153294	44975689	1669	104364											
GIPC1	10755	broad.mit.edu	37	chr19	14591629	14591629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaacctcttccccctccCtcccccttttctaatcacca	1	21	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14591629	A	A	14591629	1	1	106	0	1	0	0	0	0	0	0	0	6456	696	24	2		2	GIPC1	19	14591629	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	438335	14591629	44537354	1670	104365											
CYP4F3	4051	broad.mit.edu	37	chr19	15759996	15759996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagctcctggcctcagaGggtagtgcccgtctggacat	14	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15759996	T	T	15759996	3	4	106	1	0	0	0	0	1	0	0	0	4223	991	35	2	570	2	CYP4F3	19	15759996	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1168367	15759996	43368987	1671	104366											
USHBP1	83878	broad.mit.edu	37	chr19	17373540	17373540	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaagggaacctgctccccCttcgcttgtgccttcgaact	8	17	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17373540	T	T	17373540	3	4	106	1	0	0	0	0	1	0	0	0	17163	681	24	4	1688	4	USHBP1	19	17373540	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1613544	17373540	41755443	1672	104367											
GTPBP3	84705	broad.mit.edu	37	chr19	17448878	17448878	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggcgccaccatcttcgcgCtaagctctggccaaggccgc	11	18	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17448878	G	G	17448878	3	3	106	1	0	0	0	0	1	0	0	0	6946	796	28	4	121	4	GTPBP3	19	17448878	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	75338	17448878	41680105	1673	104368											
PDE4C	5143	broad.mit.edu	37	chr19	18330265	18330265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacctgctggggcctggcCtcaggacctgaattttgcca	11	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18330265	A	A	18330265	1	1	106	0	1	0	0	0	0	0	0	0	11735	696	24	2		2	PDE4C	19	18330265	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	881387	18330265	40798718	1674	104369											
RFXANK	8625	broad.mit.edu	37	chr19	19304657	19304657	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacctcagtttacccaccctCacagtgcaaggctaggtatg	9	13	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19304657	T	T	19304657	1	4	106	0	1	0	0	0	0	0	0	0	13377	841	29	4		4	RFXANK	19	19304657	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	974392	19304657	39824326	1675	104370											
NCAN	1463	broad.mit.edu	37	chr19	19337514	19337514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcaacagaccctcagccCtacccctggggaccccatgc	8	19	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19337514	A	A	19337514	3	1	106	1	0	0	0	0	1	0	0	0	10299	681	24	2	1314	2	NCAN	19	19337514	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	32857	19337514	39791469	1676	104371											
ZNF536	9745	broad.mit.edu	37	chr19	31047965	31047965	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactttattgtcattattcCattaaacgattaggggatgt	7	6	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31047965	T	T	31047965	1	4	106	0	1	0	0	0	0	0	0	0	18101	609	21	4		4	ZNF536	19	31047965	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	11710451	31047965	28081018	1677	104372											
GPI	2821	broad.mit.edu	37	chr19	34890734	34890734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggaatacctttgtgtcGgctcagggatttcagtagca	13	9	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34890734	T	T	34890734	1	4	106	0	1	0	0	0	0	0	0	0	6676	1131	39	1		1	GPI	19	34890734	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3842769	34890734	24238249	1678	104373											
CD22	933	broad.mit.edu	37	chr19	35836516	35836516	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcccaggttagaagggcCcccctctctgaaggccccca	9	19	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35836516	A	A	35836516	2	1	106	1	0	0	0	0	0	0	0	1	3015	610	22	2		2	CD22	19	35836516	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	945782	35836516	23292467	1679	104374											
ATP4A	495	broad.mit.edu	37	chr19	36044671	36044671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcacgctttgggttgcGtggacgcaggtgcatgatgt	15	8	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36044671	T	T	36044671	3	4	106	1	0	0	0	0	1	0	0	0	1149	1145	40	3	589	3	ATP4A	19	36044671	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	208155	36044671	23084312	1680	104375											
COX6B1	1340	broad.mit.edu	37	chr19	36145450	36145450	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaactcttgatctgggctGacttgaacccctttcttcac	6	14	4	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36145450	T	T	36145450	1	4	106	0	1	0	0	0	0	0	0	0	3808	1305	45	3		3	COX6B1	19	36145450	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	100779	36145450	22983533	1681	104376											
ARHGAP33	115703	broad.mit.edu	37	chr19	36276183	36276183	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccggggccccagtgtccctcGaaagaagcccctgccctggc	12	18	0	1	rs139022184		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36276183	A	A	36276183	3	1	106	1	0	0	0	0	1	0	0	0	884	1058	37	4	1884	4	ARHGAP33	19	36276183	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	130733	36276183	22852800	1682	104377											
APLP1	333	broad.mit.edu	37	chr19	36369656	36369656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcttggattccttgtcCtgagggaagagggagctgag	19	6	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36369656	A	A	36369656	1	1	106	0	1	0	0	0	0	0	0	0	780	696	24	2		2	APLP1	19	36369656	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	93473	36369656	22759327	1683	104378											
ZNF383	163087	broad.mit.edu	37	chr19	37733343	37733343	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttcacaaataggaaaaaaGaacatttaccattttatttt	3	5	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37733343	C	C	37733343	1	2	106	0	1	0	0	0	0	0	0	0	18000	957	33	4		4	ZNF383	19	37733343	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1363687	37733343	21395640	1684	104379											
KCNK6	9424	broad.mit.edu	37	chr19	38817394	38817394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggctgagcatgcgttggGgctgggacccccggcgggcg	19	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38817394	T	T	38817394	3	4	106	1	0	0	0	0	1	0	0	0	8140	1232	43	2	490	2	KCNK6	19	38817394	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1084051	38817394	20311589	1685	104380											
DLL3	10683	broad.mit.edu	37	chr19	39989617	39989617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccccaccagaaggccatGgtctccccacggatgtccgg	10	19	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39989617	T	T	39989617	3	4	106	1	0	0	0	0	1	0	0	0	4607	1348	47	2	5	2	DLL3	19	39989617	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1172223	39989617	19139366	1686	104381											
FCGBP	8857	broad.mit.edu	37	chr19	40433455	40433455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtcagctttgtggcctGgctggccacaacgaaggcca	14	11	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40433455	T	T	40433455	3	4	106	1	0	0	0	0	1	0	0	0	5835	1357	47	2	15543	2	FCGBP	19	40433455	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	443838	40433455	18695528	1687	104382											
CYP2A6	1548	broad.mit.edu	37	chr19	41350372	41350372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctgggcgcaggtactgGgtgcttggtagttaaggaag	16	6	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41350372	T	T	41350372	1	4	106	0	1	0	0	0	0	0	0	0	4195	1247	43	2		2	CYP2A6	19	41350372	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	916917	41350372	17778611	1688	104383											
CEACAM5	1048	broad.mit.edu	37	chr19	42225229	42225229	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatcccaaattctatcctGagccccctcactccatctcg	4	17	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42225229	T	T	42225229	1	4	106	0	1	0	0	0	0	0	0	0	3225	1305	45	3		3	CEACAM5	19	42225229	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	874857	42225229	16903754	1689	104384											
ATP1A3	478	broad.mit.edu	37	chr19	42471882	42471882	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaaggcagccagggccgtCtcctcaaacagcccgaagat	12	13	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42471882	A	A	42471882	3	1	106	1	0	0	0	0	1	0	0	0	1134	912	32	3	200	3	ATP1A3	19	42471882	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	246653	42471882	16657101	1690	104385											
CIC	23152	broad.mit.edu	37	chr19	42794026	42794026	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcttcggcaccactgacAttgatctcaagtgcaaggag	11	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42794026	G	G	42794026	3	3	106	1	0	0	0	0	1	0	0	0	3455	217	8	5	1421	5	CIC	19	42794026	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	322144	42794026	16334957	1691	104386											
MEGF8	1954	broad.mit.edu	37	chr19	42862465	42862465	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcagggggcaaaggtcagGaaaagaggctcagacccaag	14	9	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42862465	T	T	42862465	1	4	106	0	1	0	0	0	0	0	0	0	9556	1189	41	3		3	MEGF8	19	42862465	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	68439	42862465	16266518	1692	104387											
PSG6	5675	broad.mit.edu	37	chr19	43421981	43421981	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgttctcccctgtggagatGagcctaggatccagagactt	12	10	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43421981	A	A	43421981	1	1	106	0	1	0	0	0	0	0	0	0	12765	1305	45	4		4	PSG6	19	43421981	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	559516	43421981	15707002	1693	104388											
PSG6	5675	broad.mit.edu	37	chr19	43430513	43430513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccggagagagactgagaGgactggcctctggtcgtttg	17	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43430513	T	T	43430513	1	4	106	0	1	0	0	0	0	0	0	0	12765	1015	35	2		2	PSG6	19	43430513	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	8532	43430513	15698470	1694	104389											
PSG7	5676	broad.mit.edu	37	chr19	43430713	43430713	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggatcctgttttcaatgcGtcgctttaccctgggactga	11	10	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43430713	A	A	43430713	3	1	106	1	0	0	0	0	1	0	0	0	12766	1145	40	4	406	4	PSG7	19	43430713	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	200	43430713	15698270	1695	104390											
PSG6	5675	broad.mit.edu	37	chr19	43528753	43528753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acataatgcagagagggacaCaggcaatgtccaggcctgac	12	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43528753	A	A	43528753	1	1	106	0	1	0	0	0	0	0	0	0	12765	493	17	3		3	PSG6	19	43528753	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	98040	43528753	15600230	1696	104391											
PSG6	5675	broad.mit.edu	37	chr19	43601538	43601538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagataacagagaagattccCctgtgtggcacccttgattt	9	10	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43601538	A	A	43601538	1	1	106	0	1	0	0	0	0	0	0	0	12765	638	22	2		2	PSG6	19	43601538	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	72785	43601538	15527445	1697	104392											
TEX101	83639	broad.mit.edu	37	chr19	43921872	43921872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatcgatggagatttcaCagcagagaacaccagctggg	12	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43921872	A	A	43921872	1	1	106	0	1	0	0	0	0	0	0	0	15895	493	17	3		3	TEX101	19	43921872	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	320334	43921872	15207111	1698	104393											
LYPD3	27076	broad.mit.edu	37	chr19	43966018	43966018	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctgcaggaaggagacacaGataggtcagtggctggaggg	18	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43966018	A	A	43966018	1	1	106	0	1	0	0	0	0	0	0	0	9199	957	33	4		4	LYPD3	19	43966018	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	44146	43966018	15162965	1699	104394											
ZNF285	26974	broad.mit.edu	37	chr19	44891467	44891467	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttacatttgtagggttTgtctcctgaggagactttct	9	7	3	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44891467	A	A	44891467	4	1	106	1	0	0	0	0	0	1	0	0	17948	1821	63	5	836	5	ZNF285	19	44891467	Nonsense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	925449	44891467	14237516	1700	104395											
MARK4	57787	broad.mit.edu	37	chr19	45769742	45769742	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccagcagatgggggagcgGatgggggggaggggacagga	25	5	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45769742	A	A	45769742	1	1	106	0	1	0	0	0	0	0	0	0	9407	1189	41	4		4	MARK4	19	45769742	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	878275	45769742	13359241	1701	104396											
PPP1R13L	10848	broad.mit.edu	37	chr19	45895689	45895689	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggcatacaaccagcacaTgattttctgtgtgacctcag	9	11	2	2	rs35239998	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45895689	A	A	45895689	1	1	106	0	1	0	0	0	0	0	0	0	12459	1479	51	5		5	PPP1R13L	19	45895689	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	125947	45895689	13233294	1702	104397											
RTN2	6253	broad.mit.edu	37	chr19	46000123	46000123	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggacccccgcccactccGgctgtgccgccctgggcccg	13	21	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46000123	T	T	46000123	1	4	106	0	1	0	0	0	0	0	0	0	13837	1131	39	1		1	RTN2	19	46000123	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	104434	46000123	13128860	1703	104398											
GIPR	2696	broad.mit.edu	37	chr19	46181126	46181126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctgccccttcagaatGggatcgcggctggctcagcc	11	16	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46181126	T	T	46181126	1	4	106	0	1	0	0	0	0	0	0	0	6459	1363	47	2		2	GIPR	19	46181126	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	181003	46181126	12947857	1704	104399											
SYMPK	8189	broad.mit.edu	37	chr19	46347198	46347198	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgacagagcgagactctgtCtcaaaaaaaaaaaaaaaaaa	7	6	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46347198	A	A	46347198	1	1	106	0	1	0	0	0	0	0	0	0	15558	928	32	3		3	SYMPK	19	46347198	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	166072	46347198	12781785	1705	104400											
CCDC61	729440	broad.mit.edu	37	chr19	46521469	46521469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgttggaatggtagtgcgGgcagtggtatattgggccca	16	8	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46521469	T	T	46521469	1	4	106	0	1	0	0	0	0	0	0	0	2860	1247	43	2		2	CCDC61	19	46521469	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	174271	46521469	12607514	1706	104401											
PPP5C	5536	broad.mit.edu	37	chr19	46888251	46888251	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggataatagttgcagctgtAtttattttgtggactcggag	12	4	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46888251	T	T	46888251	1	4	106	0	1	0	0	0	0	0	0	0	12507	464	16	5		5	PPP5C	19	46888251	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	366782	46888251	12240732	1707	104402											
SULT2A1	6822	broad.mit.edu	37	chr19	48377943	48377943	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagttgtgctttgtccactAcataatcaacactcaggagg	9	9	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48377943	T	T	48377943	3	4	106	1	0	0	0	0	1	0	0	0	15499	391	14	5	149	5	SULT2A1	19	48377943	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1489692	48377943	10751040	1708	104403											
GRIN2D	2906	broad.mit.edu	37	chr19	48945446	48945446	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggctgtggctctctgggaTctgccacaatgacaaaatcg	12	11	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48945446	A	A	48945446	3	1	106	1	0	0	0	0	1	0	0	0	6848	1435	50	5	2522	5	GRIN2D	19	48945446	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	567503	48945446	10183537	1709	104404											
LHB	3972	broad.mit.edu	37	chr19	49520185	49520185	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatccccaccctcaggaaCtgccccacctgaagcttact	6	18	1	2	rs35612764		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49520185	A	A	49520185	1	1	106	0	1	0	0	0	0	0	0	0	8833	580	20	3		3	LHB	19	49520185	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	574739	49520185	9608798	1710	104405											
TRPM4	54795	broad.mit.edu	37	chr19	49704042	49704042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccccaggaggacatggacGgtaggggggatgacggcctg	18	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49704042	T	T	49704042	3	4	106	1	0	0	0	0	1	0	0	0	16713	1130	39	1	3027	1	TRPM4	19	49704042	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	183857	49704042	9424941	1711	104406											
PRR12	57479	broad.mit.edu	37	chr19	50099833	50099833	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctggccacctctgttgtCcactacggggcaggcgccaa	14	14	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50099833	T	T	50099833	2	4	106	1	0	0	0	0	0	0	0	1	12690	842	30	4		4	PRR12	19	50099833	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	395791	50099833	9029150	1712	104407											
MYH14	79784	broad.mit.edu	37	chr19	50779265	50779265	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggcagaagacgagggtgGggcccgggcccagctgctga	19	11	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50779265	C	C	50779265	3	2	106	1	0	0	0	0	1	0	0	0	10127	1232	43	4	3591	4	MYH14	19	50779265	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	679432	50779265	8349718	1713	104408											
KLK1	3816	broad.mit.edu	37	chr19	51327020	51327020	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatggtgacagaggtgtcCaggggccagcaggtggagga	18	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51327020	T	T	51327020	1	4	106	0	1	0	0	0	0	0	0	0	8468	609	21	4		4	KLK1	19	51327020	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	547755	51327020	7801963	1714	104409											
SIGLEC9	27180	broad.mit.edu	37	chr19	51630332	51630332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctgtcactcccagaggGccagtctctgcgcctggtct	10	15	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51630332	T	T	51630332	3	4	106	1	0	0	0	0	1	0	0	0	14428	1203	42	3	808	3	SIGLEC9	19	51630332	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	303312	51630332	7498651	1715	104410											
IGLON5	402665	broad.mit.edu	37	chr19	51828677	51828677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacctgctttgcctggccGtggggcggccagagcccacg	15	14	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51828677	T	T	51828677	3	4	106	1	0	0	0	0	1	0	0	0	7665	1145	40	3	483	3	IGLON5	19	51828677	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	198345	51828677	7300306	1716	104411											
SIGLEC10	89790	broad.mit.edu	37	chr19	51914385	51914385	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttctgcataatccgcctGggtgcccttgggcatccggg	13	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51914385	A	A	51914385	4	1	106	1	0	0	0	0	0	1	0	0	14419	1357	47	4	35	4	SIGLEC10	19	51914385	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	85708	51914385	7214598	1717	104412											
SIGLEC8	27181	broad.mit.edu	37	chr19	51957682	51957682	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtgaccgaggcgcaaCggcggtggtccagttccaga	18	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51957682	T	T	51957682	1	4	106	0	1	0	0	0	0	0	0	0	14427	551	19	4		4	SIGLEC8	19	51957682	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	43297	51957682	7171301	1718	104413											
SIGLEC8	27181	broad.mit.edu	37	chr19	51961521	51961521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggcacatggacacacaGgccctcctgcaccgtcacca	10	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51961521	T	T	51961521	3	4	106	1	0	0	0	0	1	0	0	0	14427	991	35	2	1406	2	SIGLEC8	19	51961521	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3839	51961521	7167462	1719	104414											
CEACAM18	729767	broad.mit.edu	37	chr19	51986279	51986279	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgtctctacagatgggcccGactatgtgctgctgaggagc	13	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51986279	C	C	51986279	3	2	106	1	0	0	0	0	1	0	0	0	3219	1058	37	4	883	4	CEACAM18	19	51986279	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	24758	51986279	7142704	1720	104415											
SIGLEC6	946	broad.mit.edu	37	chr19	52031218	52031218	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacatgagcccaagagttgGaccacggtttcaaagagacc	10	11	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52031218	T	T	52031218	1	4	106	0	1	0	0	0	0	0	0	0	14425	1189	41	3		3	SIGLEC6	19	52031218	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	44939	52031218	7097765	1721	104416											
PPP2R1A	5518	broad.mit.edu	37	chr19	52719903	52719903	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgcccctcttcctggctcAgctgaaggatgaggtaaggg	13	11	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52719903	T	T	52719903	3	4	106	1	0	0	0	0	1	0	0	0	12483	188	7	5	1149	5	PPP2R1A	19	52719903	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	688685	52719903	6409080	1722	104417											
DPRX	503834	broad.mit.edu	37	chr19	54135251	54135251	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatagggcagagaaaggtgGaggaggtgggagtcgggtgt	22	2	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54135251	T	T	54135251	1	4	106	0	1	0	0	0	0	0	0	0	4778	1189	41	3		3	DPRX	19	54135251	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	1415348	54135251	4993732	1723	104418											
DPRX	503834	broad.mit.edu	37	chr19	54135266	54135266	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggaggaggtgggagtcGggtgtggctgtggaggaagc	24	3	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54135266	T	T	54135266	1	4	106	0	1	0	0	0	0	0	0	0	4778	1131	39	1		1	DPRX	19	54135266	5'Flank	SNP	G	TCGA-44-2656-01A-02D-0969-08	15	54135266	4993717	1724	104419											
CACNG6	59285	broad.mit.edu	37	chr19	54496020	54496021	+	5'UTR	DNP	GG	TT	TT													ctccctctttcatacccaggGgaaactgagtccctcacccc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54496021	TT	TT	54496020	1	4	106	0	1	0	0	0	0	0	0	0	2587	1247	43	2		2	CACNG6	19	54496020	5'UTR	DNP	GG	TCGA-44-2656-01A-02D-0969-08	360754	54496020	4632963	1725	104420											
PRPF31	26121	broad.mit.edu	37	chr19	54625417	54625417	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcccagggtcctgcccctaAgcccaagctcagatcgaggt	10	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54625417	T	T	54625417	1	4	106	0	1	0	0	0	0	0	0	0	12672	87	3	5		5	PRPF31	19	54625417	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	129397	54625417	4503566	1726	104421											
LILRB3	11025	broad.mit.edu	37	chr19	54743050	54743050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcccaacccagggcacccCccatccgccattgacagaac	7	19	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54743050	A	A	54743050	1	1	106	0	1	0	0	0	0	0	0	0	8864	638	22	2		2	LILRB3	19	54743050	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	117633	54743050	4385933	1727	104422											
LILRB3	11025	broad.mit.edu	37	chr19	54746496	54746496	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttttgaggtctcctgatgGaccagggcttgtgtgtgggg	17	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54746496	C	C	54746496	1	2	106	0	1	0	0	0	0	0	0	0	8864	1189	41	4		4	LILRB3	19	54746496	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3446	54746496	4382487	1728	104423											
LILRA4	23547	broad.mit.edu	37	chr19	54848657	54848657	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtccccctgactgaacccGctgggctcctcacctgcgat	11	17	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54848657	A	A	54848657	1	1	106	0	1	0	0	0	0	0	0	0	8859	1102	38	4		4	LILRA4	19	54848657	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	102161	54848657	4280326	1729	104424											
LAIR2	3904	broad.mit.edu	37	chr19	55020357	55020357	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgtgctgcggatgctgttCcgggtccagccctctgccct	12	15	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55020357	A	A	55020357	1	1	106	0	1	0	0	0	0	0	0	0	8675	870	30	3		3	LAIR2	19	55020357	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	171700	55020357	4108626	1730	104425											
LILRB1	10859	broad.mit.edu	37	chr19	55146212	55146212	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagggcaaacactggacatCgagtgagtagggaatggggg	17	6	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55146212	A	A	55146212	4	1	106	1	0	0	0	0	0	1	0	0	8862	893	31	3	1518	3	LILRB1	19	55146212	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	125855	55146212	3982771	1731	104426											
LILRB1	10859	broad.mit.edu	37	chr19	55147920	55147920	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaggaggattcaaggacAccccccaccactgtctctct	9	15	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55147920	T	T	55147920	1	4	106	0	1	0	0	0	0	0	0	0	8862	174	6	5		5	LILRB1	19	55147920	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1708	55147920	3981063	1732	104427											
LILRB4	11006	broad.mit.edu	37	chr19	55174614	55174614	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagactcaaaaatctcagGgtagccgggcgcggtggctc	15	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55174614	C	C	55174614	1	2	106	0	1	0	0	0	0	0	0	0	8865	1247	43	4		4	LILRB4	19	55174614	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	26694	55174614	3954369	1733	104428											
LILRB4	11006	broad.mit.edu	37	chr19	55175159	55175159	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcctggggctgagagctGggatctgagggctgaggaag	21	6	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55175159	T	T	55175159	1	4	106	0	1	0	0	0	0	0	0	0	8865	1363	47	2		2	LILRB4	19	55175159	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	545	55175159	3953824	1734	104429											
KIR3DL1	3811	broad.mit.edu	37	chr19	55377734	55377734	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgaagagcctcaggcaccTacagcctccccctgtgggtt	11	15	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55377734	C	C	55377734	1	2	106	0	1	0	0	0	0	0	0	0	8391	1537	53	5		5	KIR3DL1	19	55377734	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	202575	55377734	3751249	1735	104430											
NLRP2	55655	broad.mit.edu	37	chr19	55497607	55497607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacgtatctgacccttcaaGgcaatgaccaggatgatatg	9	9	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55497607	T	T	55497607	3	4	106	1	0	0	0	0	1	0	0	0	10572	1000	35	2	2316	2	NLRP2	19	55497607	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	119873	55497607	3631376	1736	104431											
SYT5	6861	broad.mit.edu	37	chr19	55685664	55685664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttaggggtgggacatcCcggtcccgcttagagcagat	14	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55685664	T	T	55685664	1	4	106	0	1	0	0	0	0	0	0	0	15596	638	22	4		4	SYT5	19	55685664	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	188057	55685664	3443319	1737	104432											
NLRP4	147945	broad.mit.edu	37	chr19	56369376	56369376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtttggctgacttgatttCcagagagtggcctgaccccg	13	10	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56369376	A	A	56369376	3	1	106	1	0	0	0	0	1	0	0	0	10574	855	30	3	623	3	NLRP4	19	56369376	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	683712	56369376	2759607	1738	104433											
NLRP4	147945	broad.mit.edu	37	chr19	56370026	56370026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacgacctccggagaaatGgggttgttgacgctgacatc	13	9	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56370026	T	T	56370026	3	4	106	1	0	0	0	0	1	0	0	0	10574	1348	47	2	1273	2	NLRP4	19	56370026	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	650	56370026	2758957	1739	104434											
ZNF417	147687	broad.mit.edu	37	chr19	58427738	58427738	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgagggcacagaaggcgcCacaattacctgagtcgggcg	14	12	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58427738	G	G	58427738	1	3	106	0	1	0	0	0	0	0	0	0	18021	609	21	4		4	ZNF417	19	58427738	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2057712	58427738	701245	1740	104435											
ZSCAN18	65982	broad.mit.edu	37	chr19	58600081	58600081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggtgccgggatctccCcagctccaagggcctggctg	14	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58600081	A	A	58600081	3	1	106	1	0	0	0	0	1	0	0	0	18359	623	22	2	1025	2	ZSCAN18	19	58600081	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	172343	58600081	528902	1741	104436											
A1BG	1	broad.mit.edu	37	chr19	58862708	58862708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacacctggtactgctcctGctccccagggacccagccgc	9	19	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58862708	T	T	58862708	1	4	106	0	1	0	0	0	0	0	0	0	1	1334	46	3		3	A1BG	19	58862708	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	262627	58862708	266275	1742	104437											
DEFB126	81623	broad.mit.edu	37	chr20	126348	126348	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgaacattccagcctctGtctcctgctctaggatcccc	8	15	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126348	T	T	126348	1	4	106	0	1	0	0	0	0	0	0	0	4451	1392	48	3		3	DEFB126	20	126348	3'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08		126348	62899172	1743	104438											
CSNK2A1	1457	broad.mit.edu	37	chr20	480619	480621	+	Intron	DEL	AAT	-	-													cagcaaaaaaaaaaaaaaaaAattttttcagagtatttcaa					rs205904	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	480621	-	-	480619	6	5	106	0	1	1	0	1	0	0	0	0	3991	29	1	0		0	CSNK2A1	20	480619	Intron	DEL	AAT	TCGA-44-2656-01A-02D-0969-08	354271	480619	62544901	1744	104439											
TMC2	117532	broad.mit.edu	37	chr20	2605067	2605067	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttagccaggacccatggctCcaccccacggaaacttctcc	8	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2605067	A	A	2605067	1	1	106	0	1	0	0	0	0	0	0	0	16108	870	30	3		3	TMC2	20	2605067	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2124448	2605067	60420453	1745	104440											
VPS16	64601	broad.mit.edu	37	chr20	2840774	2840774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatatatactctgcttccGgcatgcctctggccagcctg	9	14	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2840774	T	T	2840774	3	4	106	1	0	0	0	0	1	0	0	0	17320	1116	39	1	227	1	VPS16	20	2840774	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	235707	2840774	60184746	1746	104441											
RASSF2	9770	broad.mit.edu	37	chr20	4770300	4770300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcatggtgctgttgatgCggacgttggtgacagagcca	16	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4770300	A	A	4770300	3	1	106	1	0	0	0	0	1	0	0	0	13194	768	27	3	419	3	RASSF2	20	4770300	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1929526	4770300	58255220	1747	104442											
PLCB1	23236	broad.mit.edu	37	chr20	8352142	8352142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagatgctgccttgattGtttggctgtgtcacaatatc	9	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8352142	T	T	8352142	1	4	106	0	1	0	0	0	0	0	0	0	12122	1392	48	3		3	PLCB1	20	8352142	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3581842	8352142	54673378	1748	104443											
PLCB1	23236	broad.mit.edu	37	chr20	8770893	8770894	+	Missense_Mutation	DNP	GG	TT	TT													gaaatacgtcagcagatcctGgatgaaaagcccaaggtaaa							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	8770894	TT	TT	8770893	3	4	106	1	0	0	0	0	1	0	0	0	12122	1335	47	2	3530	2	PLCB1	20	8770893	Missense_Mutation	DNP	GG	TCGA-44-2656-01A-02D-0969-08	418751	8770893	54254627	1749	104444											
XRN2	22803	broad.mit.edu	37	chr20	21369903	21369903	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaactctttcttttgtttAttttcagggatatcccagag	6	7	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21369903	T	T	21369903	1	4	106	0	1	0	0	0	0	0	0	0	17587	464	16	5		5	XRN2	20	21369903	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	12599010	21369903	41655617	1750	104445											
CST7	8530	broad.mit.edu	37	chr20	24940200	24940200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagctcctccatgaggacCacccctccacgggcagaggg	12	15	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24940200	A	A	24940200	1	1	106	0	1	0	0	0	0	0	0	0	4011	609	21	2		2	CST7	20	24940200	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3570297	24940200	38085320	1751	104446											
DEFB119	245932	broad.mit.edu	37	chr20	29977160	29977160	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagctgagtgagtaatgccaGacccagtcccaggaaaagag	12	10	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29977160	T	T	29977160	1	4	106	0	1	0	0	0	0	0	0	0	4446	957	33	3		3	DEFB119	20	29977160	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5036960	29977160	33048360	1752	104447											
DUSP15	128853	broad.mit.edu	37	chr20	30454916	30454916	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggatagagatgatgtgTgtgatcttatttcggcccag	12	6	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30454916	A	A	30454916	2	1	106	1	0	0	0	0	0	0	0	1	4855	1683	59	5		5	DUSP15	20	30454916	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	477756	30454916	32570604	1753	104448											
TTLL9	164395	broad.mit.edu	37	chr20	30458921	30458921	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttccatccatttcggcccCtaggagggatggtgccatcc	10	15	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30458921	G	G	30458921	1	3	106	0	1	0	0	0	0	0	0	0	16860	696	24	4		4	TTLL9	20	30458921	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4005	30458921	32566599	1754	104449											
BPIL3	128859	broad.mit.edu	37	chr20	31620695	31620695	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctgggtctctgccatcgtCcagcccagggtggggcacag	14	14	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31620695	A	A	31620695	1	1	106	0	1	0	0	0	0	0	0	0	1502	870	30	3		3	BPIL3	20	31620695	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1161774	31620695	31404825	1755	104450											
C20orf114	92747	broad.mit.edu	37	chr20	31873972	31873972	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccactgcagttctcatcctCggcccaaaagtcatcaaaga	6	15	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31873972	T	T	31873972	2	4	106	1	0	0	0	0	0	0	0	1	2104	871	31	4		4	C20orf114	20	31873972	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	253277	31873972	31151548	1756	104451											
FAM83C	128876	broad.mit.edu	37	chr20	33876672	33876672	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcctgggcaaggagcagGtacacagggacaccacgccg	14	13	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33876672	T	T	33876672	4	4	106	1	0	0	0	0	0	1	0	0	5688	1256	44	3	1652	3	FAM83C	20	33876672	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2002700	33876672	29148848	1757	104452											
SAMHD1	25939	broad.mit.edu	37	chr20	35540928	35540928	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaaagagttgcgagtgtGgaacatgtcatacagatttc	12	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35540928	A	A	35540928	3	1	106	1	0	0	0	0	1	0	0	0	13939	1348	47	4	818	4	SAMHD1	20	35540928	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1664256	35540928	27484592	1758	104453											
KIAA1755	85449	broad.mit.edu	37	chr20	36854257	36854257	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaaggtcctgcccagatcCctgccccagcaccagttcat	8	16	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36854257	T	T	36854257	1	4	106	0	1	0	0	0	0	0	0	0	8327	638	22	4		4	KIAA1755	20	36854257	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1313329	36854257	26171263	1759	104454											
LBP	3929	broad.mit.edu	37	chr20	36993349	36993349	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggattatgtcttcaacacGgccagcctggtttatcatga	9	10	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36993349	T	T	36993349	2	4	106	1	0	0	0	0	0	0	0	1	8723	1103	39	1		1	LBP	20	36993349	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	139092	36993349	26032171	1760	104455											
LBP	3929	broad.mit.edu	37	chr20	36993396	36993396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatctgaacttctccatcaCagatgacatggtgaggatgg	10	8	3	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36993396	A	A	36993396	3	1	106	1	0	0	0	0	1	0	0	0	8723	478	17	3	941	3	LBP	20	36993396	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	47	36993396	26032124	1761	104456											
RALGAPB	57148	broad.mit.edu	37	chr20	37163696	37163696	+	Intron	DEL	G	-	-													tttccctccctgtgggatgtGgcattggggttatatcctag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37163696	-	-	37163696	6	5	106	0	1	1	0	1	0	0	0	0	13123	1363	47	0		0	RALGAPB	20	37163696	Intron	DEL	G	TCGA-44-2656-01A-02D-0969-08	170300	37163696	25861824	1762	104457											
DHX35	60625	broad.mit.edu	37	chr20	37647546	37647546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgctgcttgaatcaggtgGgtagagcctgatagcttgaa	13	6	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37647546	T	T	37647546	1	4	106	0	1	0	0	0	0	0	0	0	4548	1247	43	2		2	DHX35	20	37647546	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	483850	37647546	25377974	1763	104458											
PTPRT	11122	broad.mit.edu	37	chr20	40790290	40790290	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcagagggaaccaacttggGactcaactgatagggaaact	13	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40790290	A	A	40790290	1	1	106	0	1	0	0	0	0	0	0	0	12920	1189	41	4		4	PTPRT	20	40790290	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3142744	40790290	22235230	1764	104459											
SGK2	10110	broad.mit.edu	37	chr20	42213457	42213457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggcagctctgaccccGgtgttttcttctcatcattg	8	13	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42213457	T	T	42213457	1	4	106	0	1	0	0	0	0	0	0	0	14322	1131	39	1		1	SGK2	20	42213457	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1423167	42213457	20812063	1765	104460											
MATN4	8785	broad.mit.edu	37	chr20	43922340	43922340	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcctggccccggcgcacCgatggcgcgcaaggggcacc	15	17	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43922340	A	A	43922340	1	1	106	0	1	0	0	0	0	0	0	0	9428	667	23	1		1	MATN4	20	43922340	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	1708883	43922340	19103180	1766	104461											
RBPJL	11317	broad.mit.edu	37	chr20	43942877	43942877	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggagagtgaggccccaaGgcatggagacacctgttctc	14	11	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43942877	C	C	43942877	1	2	106	0	1	0	0	0	0	0	0	0	13270	1015	35	4		4	RBPJL	20	43942877	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	20537	43942877	19082643	1767	104462											
ZSWIM3	140831	broad.mit.edu	37	chr20	44505620	44505620	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaagaccttgacactgcCgagaagtccctggttgagcc	10	11	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44505620	T	T	44505620	2	4	106	1	0	0	0	0	0	0	0	1	18371	639	23	4		4	ZSWIM3	20	44505620	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	562743	44505620	18519900	1768	104463											
MMP9	4318	broad.mit.edu	37	chr20	44637627	44637627	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctgctgctttgctgcccCcagacagcgccagtccaccc	11	18	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44637627	T	T	44637627	3	4	106	1	0	0	0	0	1	0	0	0	9763	623	22	4	64	4	MMP9	20	44637627	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	132007	44637627	18387893	1769	104464											
CDH22	64405	broad.mit.edu	37	chr20	44841625	44841625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccccattcctcctgaggCagctgcaccttctgcactac	6	19	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44841625	A	A	44841625	1	1	106	0	1	0	0	0	0	0	0	0	3137	725	25	3		3	CDH22	20	44841625	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	203998	44841625	18183895	1770	104465											
BCAS1	8537	broad.mit.edu	37	chr20	52591957	52591957	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcacctgtggggactgagtCctctttaactgactaaagga	11	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52591957	G	G	52591957	3	3	106	1	0	0	0	0	1	0	0	0	1355	855	30	4	621	4	BCAS1	20	52591957	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	7750332	52591957	10433563	1771	104466											
BCAS1	8537	broad.mit.edu	37	chr20	52612502	52612502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgggaatcgtcctttgCagtctccagtccttctgggt	11	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52612502	A	A	52612502	3	1	106	1	0	0	0	0	1	0	0	0	1355	710	25	3	975	3	BCAS1	20	52612502	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	20545	52612502	10413018	1772	104467											
BMP7	655	broad.mit.edu	37	chr20	55748235	55748235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcccaggtgaccacaccCcaagatggcgtgacacccac	10	18	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55748235	A	A	55748235	1	1	106	0	1	0	0	0	0	0	0	0	1471	638	22	2		2	BMP7	20	55748235	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	3135733	55748235	7277285	1773	104468											
BMP7	655	broad.mit.edu	37	chr20	55803157	55803157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatacaccttctttagaaGggataatctggtacagggcc	9	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55803157	T	T	55803157	1	4	106	0	1	0	0	0	0	0	0	0	1471	1015	35	2		2	BMP7	20	55803157	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	54922	55803157	7222363	1774	104469											
ZNF831	128611	broad.mit.edu	37	chr20	57767249	57767249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggggccgagcccggggCgcgagaagccggcctggagc	20	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57767249	A	A	57767249	3	1	106	1	0	0	0	0	1	0	0	0	18314	768	27	3	1177	3	ZNF831	20	57767249	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1964092	57767249	5258271	1775	104470											
ZNF831	128611	broad.mit.edu	37	chr20	57829002	57829002	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgactgtactactcacagcaCtgctgccacatcaggattat	7	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57829002	G	G	57829002	3	3	106	1	0	0	0	0	1	0	0	0	18314	565	20	4	4256	4	ZNF831	20	57829002	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	61753	57829002	5196518	1776	104471											
EDN3	1908	broad.mit.edu	37	chr20	57876663	57876663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccctgggcaggagcaggCggccgagggggcccctgagc	19	13	0	1	rs142051051	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57876663	A	A	57876663	3	1	106	1	0	0	0	0	1	0	0	0	4958	768	27	3	257	3	EDN3	20	57876663	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	47661	57876663	5148857	1777	104472											
PHACTR3	116154	broad.mit.edu	37	chr20	58348406	58348406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggggccagctctccacacCcacggggtctccgcatctca	10	19	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58348406	T	T	58348406	3	4	106	1	0	0	0	0	1	0	0	0	11906	623	22	4	846	4	PHACTR3	20	58348406	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	471743	58348406	4677114	1778	104473											
CDH4	1002	broad.mit.edu	37	chr20	60469904	60469904	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggatttcttttgataagtGccctgtcaattaaaacccaa	6	9	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60469904	C	C	60469904	1	2	106	0	1	0	0	0	0	0	0	0	3142	1334	46	4		4	CDH4	20	60469904	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2121498	60469904	2555616	1779	104474											
COL9A3	1299	broad.mit.edu	37	chr20	61460982	61460982	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctccttcctctacagggCagagctggggagctgggtga	15	11	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61460982	A	A	61460982	2	1	106	1	0	0	0	0	0	0	0	1	3741	697	25	3		3	COL9A3	20	61460982	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	991078	61460982	1564538	1780	104475											
SLC17A9	63910	broad.mit.edu	37	chr20	61588903	61588903	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacctggccttcatgacctTctcacgcatcctcatgggct	7	17	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61588903	C	C	61588903	3	2	106	1	0	0	0	0	1	0	0	0	14537	1783	62	5	378	5	SLC17A9	20	61588903	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	127921	61588903	1436617	1781	104476											
NKAIN4	128414	broad.mit.edu	37	chr20	61874102	61874102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagacagtgcccaaagccCtgacatgacagcagagggaa	11	12	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61874102	A	A	61874102	1	1	106	0	1	0	0	0	0	0	0	0	10533	696	24	2		2	NKAIN4	20	61874102	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	285199	61874102	1151418	1782	104477											
RTEL1	51750	broad.mit.edu	37	chr20	62294126	62294126	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgggggtggggactgGcttcggtcctttcttggccg	18	10	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62294126	A	A	62294126	1	1	106	0	1	0	0	0	0	0	0	0	13831	1218	42	4		4	RTEL1	20	62294126	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	420024	62294126	731394	1783	104478											
RTEL1	51750	broad.mit.edu	37	chr20	62305089	62305089	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgagccaccgcgcccgGcctgaaacaatcgtttctaa	11	13	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62305089	A	A	62305089	1	1	106	0	1	0	0	0	0	0	0	0	13831	1218	42	4		4	RTEL1	20	62305089	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	10963	62305089	720431	1784	104479											
RTEL1	51750	broad.mit.edu	37	chr20	62312042	62312042	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgttcaccaacacggcCggactgcagaagctggcgga	15	11	1	1	rs141241780		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62312042	T	T	62312042	2	4	106	1	0	0	0	0	0	0	0	1	13831	639	23	4		4	RTEL1	20	62312042	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	6953	62312042	713478	1785	104480											
TCEA2	6919	broad.mit.edu	37	chr20	62697832	62697832	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttctccttccaggagGgagccatggatttgctgcgg	12	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62697832	T	T	62697832	4	4	106	1	0	0	0	0	0	1	0	0	15790	1233	43	2	82	2	TCEA2	20	62697832	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	385790	62697832	327688	1786	104481											
TPTE	7179	broad.mit.edu	37	chr21	10971752	10971752	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcctgcccaagagttgcGgccaagtagctggaggcctc	12	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971752	T	T	10971752	1	4	106	0	1	0	0	0	0	0	0	0	16554	1131	39	1		1	TPTE	21	10971752	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08		10971752	37158143	1787	104482											
GRIK1	2897	broad.mit.edu	37	chr21	31045289	31045290	+	Intron	DNP	CC	AA	AA													tcccacacctccacctcctcCctagccctcttacctgctta							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31045290	AA	AA	31045289	1	1	106	0	1	0	0	0	0	0	0	0	6839	638	22	2		2	GRIK1	21	31045289	Intron	DNP	CC	TCGA-44-2656-01A-02D-0969-08	20073537	31045289	17084606	1788	104483											
TIAM1	7074	broad.mit.edu	37	chr21	32554698	32554698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccgggtcgtggcacaaCggagttcagactcgccccca	11	17	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32554698	A	A	32554698	1	1	106	0	1	0	0	0	0	0	0	0	16013	551	19	3		3	TIAM1	21	32554698	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1509409	32554698	15575197	1789	104484											
TIAM1	7074	broad.mit.edu	37	chr21	32589756	32589756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctagtttctttgtgccaaCtagttgattttaaataacac	6	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32589756	A	A	32589756	1	1	106	0	1	0	0	0	0	0	0	0	16013	580	20	3		3	TIAM1	21	32589756	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	35058	32589756	15540139	1790	104485											
CLDN14	23562	broad.mit.edu	37	chr21	37833580	37833580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcaccacgtcgttggtggtCcaggagacggccaccatgca	13	13	0	1	rs142846225	byFrequency	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37833580	A	A	37833580	3	1	106	1	0	0	0	0	1	0	0	0	3506	856	30	3	309	3	CLDN14	21	37833580	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	5243824	37833580	10296315	1791	104486											
HLCS	3141	broad.mit.edu	37	chr21	38139633	38139633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccagacatggacacgccCgcggcaccaatggctcacac	11	16	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38139633	A	A	38139633	1	1	106	0	1	0	0	0	0	0	0	0	7280	667	23	1		1	HLCS	21	38139633	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	306053	38139633	9990262	1792	104487											
ERG	2078	broad.mit.edu	37	chr21	39775598	39775598	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccgcccactccagccacTgccgcacatggtctgtactc	7	19	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39775598	G	G	39775598	3	3	106	1	0	0	0	0	1	0	0	0	5264	1580	55	5	1045	5	ERG	21	39775598	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	1635965	39775598	8354297	1793	104488											
ERG	2078	broad.mit.edu	37	chr21	39947641	39947641	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtccttcagtaagccaGcccatctaccagctgttcag	7	14	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39947641	A	A	39947641	1	1	106	0	1	0	0	0	0	0	0	0	5264	986	34	4		4	ERG	21	39947641	5'UTR	SNP	G	TCGA-44-2656-01A-02D-0969-08	172043	39947641	8182254	1794	104489											
IGSF5	150084	broad.mit.edu	37	chr21	41137527	41137527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcctgaagggctcccagGctcgcttcaactgcaccgtc	11	15	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41137527	T	T	41137527	3	4	106	1	0	0	0	0	1	0	0	0	7672	1203	42	3	176	3	IGSF5	21	41137527	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1189886	41137527	6992368	1795	104490											
DSCAM	1826	broad.mit.edu	37	chr21	41725556	41725556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgttgtccttcagccagCggtaatctggctcagggtgc	13	11	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41725556	T	T	41725556	3	4	106	1	0	0	0	0	1	0	0	0	4808	768	27	4	5384	4	DSCAM	21	41725556	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	588029	41725556	6404339	1796	104491											
MX2	4600	broad.mit.edu	37	chr21	42771258	42771258	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatacttgcaactaataccCaaaaaggtaagttctgggca	8	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42771258	T	T	42771258	4	4	106	1	0	0	0	0	0	1	0	0	10092	595	21	4	1442	4	MX2	21	42771258	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1045702	42771258	5358637	1797	104492											
MX1	4599	broad.mit.edu	37	chr21	42811572	42811572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattcaccatcatgagatccGtttatcctaagctctgtttg	6	10	3	1	rs138419122	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42811572	A	A	42811572	1	1	106	0	1	0	0	0	0	0	0	0	10091	1160	40	4		4	MX1	21	42811572	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	40314	42811572	5318323	1798	104493											
PRDM15	63977	broad.mit.edu	37	chr21	43279669	43279669	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgccgcagctggcatatGgaaggcccgggagctcacgg	15	13	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43279669	A	A	43279669	1	1	106	0	1	0	0	0	0	0	0	0	12562	1363	47	4		4	PRDM15	21	43279669	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	468097	43279669	4850226	1799	104494											
ZNF295	49854	broad.mit.edu	37	chr21	43412161	43412161	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgctgcttaaattgagagaGaaagcggtacgcttttccgc	11	8	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43412161	T	T	43412161	3	4	106	1	0	0	0	0	1	0	0	0	17953	942	33	3	1160	3	ZNF295	21	43412161	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	132492	43412161	4717734	1800	104495											
UMODL1	89766	broad.mit.edu	37	chr21	43524089	43524089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgaggctcaagctcaccGtgcaggaccccgggtttccc	12	15	2	1	rs150059583		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43524089	T	T	43524089	3	4	106	1	0	0	0	0	1	0	0	0	17106	1145	40	3	1445	3	UMODL1	21	43524089	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	111928	43524089	4605806	1801	104496											
TFF3	7033	broad.mit.edu	37	chr21	43733547	43733547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggaggccctgagacccCctgccttatggggctgggcc	15	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43733547	A	A	43733547	1	1	106	0	1	0	0	0	0	0	0	0	15928	638	22	2		2	TFF3	21	43733547	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	209458	43733547	4396348	1802	104497											
PDE9A	5152	broad.mit.edu	37	chr21	44119001	44119001	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgctgatttctaatcatgccGagtgcttatctctcctgcca	7	13	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44119001	T	T	44119001	1	4	106	0	1	0	0	0	0	0	0	0	11749	1073	37	3		3	PDE9A	21	44119001	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	385454	44119001	4010894	1803	104498											
TRAPPC10	7109	broad.mit.edu	37	chr21	45478948	45478948	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctatacattgatttatgtTtttgtttttttaaaaaacgt	4	3	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45478948	A	A	45478948	1	1	106	0	1	0	0	0	0	0	0	0	16581	1856	64	5		5	TRAPPC10	21	45478948	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	1359947	45478948	2650947	1804	104499											
ICOSLG	23308	broad.mit.edu	37	chr21	45651051	45651051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagccaccgtgcccagcCtaccacaataaagtttcaag	8	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45651051	A	A	45651051	1	1	106	0	1	0	0	0	0	0	0	0	7557	696	24	2		2	ICOSLG	21	45651051	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	172103	45651051	2478844	1805	104500											
TRPM2	7226	broad.mit.edu	37	chr21	45784220	45784220	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagctgcatggccccacaGtgacacgcggtggtcggcat	15	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45784220	A	A	45784220	1	1	106	0	1	0	0	0	0	0	0	0	16711	1044	36	4		4	TRPM2	21	45784220	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	133169	45784220	2345675	1806	104501											
KRTAP10-8	386681	broad.mit.edu	37	chr21	46032564	46032564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcctgtctgctctgggGcttcctctctgtgctgccag	13	13	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46032564	T	T	46032564	3	4	106	1	0	0	0	0	1	0	0	0	8586	1203	42	3	549	3	KRTAP10-8	21	46032564	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	248344	46032564	2097331	1807	104502											
ADARB1	104	broad.mit.edu	37	chr21	46640630	46640630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgtatattcctcggcagGcagaattcccccaccacgca	8	16	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46640630	T	T	46640630	1	4	106	0	1	0	0	0	0	0	0	0	282	1218	42	3		3	ADARB1	21	46640630	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	608066	46640630	1489265	1808	104503											
COL18A1	80781	broad.mit.edu	37	chr21	46914555	46914555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggacacggtcgcccgcGgctgctgagcttgtgctgtg	15	13	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46914555	T	T	46914555	1	4	106	0	1	0	0	0	0	0	0	0	3707	1131	39	1		1	COL18A1	21	46914555	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	273925	46914555	1215340	1809	104504											
PCBP3	54039	broad.mit.edu	37	chr21	47329246	47329246	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgacgcctgaagtgctgcCaacacacgtgtctctcccct	8	17	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47329246	T	T	47329246	1	4	106	0	1	0	0	0	0	0	0	0	11596	609	21	4		4	PCBP3	21	47329246	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	414691	47329246	800649	1810	104505											
PCBP3	54039	broad.mit.edu	37	chr21	47350783	47350783	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacaaagccacactgacagGagaacaggccagggcagcag	12	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47350783	T	T	47350783	1	4	106	0	1	0	0	0	0	0	0	0	11596	1189	41	3		3	PCBP3	21	47350783	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	21537	47350783	779112	1811	104506											
COL6A2	1292	broad.mit.edu	37	chr21	47541289	47541289	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgggcctgaggtcctggaTgggccacagggaaaggagga	19	7	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47541289	A	A	47541289	1	1	106	0	1	0	0	0	0	0	0	0	3732	1479	51	5		5	COL6A2	21	47541289	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	190506	47541289	588606	1812	104507											
FTCD	10841	broad.mit.edu	37	chr21	47556896	47556896	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcccggagaggcctcccgCaccgtcactcctgccgggtc	13	18	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47556896	T	T	47556896	1	4	106	0	1	0	0	0	0	0	0	0	6141	725	25	4		4	FTCD	21	47556896	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	15607	47556896	572999	1813	104508											
CCT8L2	150160	broad.mit.edu	37	chr22	17071902	17071902	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttcatctacagtcacgagCtgtagcaccacctcagccac	6	15	4	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17071902	G	G	17071902	3	3	106	1	0	0	0	0	1	0	0	0	2991	796	28	4	138	4	CCT8L2	22	17071902	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08		17071902	34232664	1814	104509											
GAB4	128954	broad.mit.edu	37	chr22	17451135	17451135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaggaggccaggactgCcccagggaggcaggcgggga	21	9	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17451135	A	A	17451135	1	1	106	0	1	0	0	0	0	0	0	0	6211	754	26	3		3	GAB4	22	17451135	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	379233	17451135	33853431	1815	104510											
MICAL3	57553	broad.mit.edu	37	chr22	18301457	18301457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatccagaactcctccaCcaggtcgctccgtctgaggg	9	16	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18301457	A	A	18301457	3	1	106	1	0	0	0	0	1	0	0	0	9664	507	18	3	2066	3	MICAL3	22	18301457	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	850322	18301457	33003109	1816	104511											
LZTR1	8216	broad.mit.edu	37	chr22	21348256	21348256	+	Frame_Shift_Del	DEL	G	-	-													cgtagccattgtcacagcgcGgagccgctggcttcgcagga							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21348256	-	-	21348256	7	5	106	1	0	1	0	1	0	0	0	0	9225	1116	39	0	1447	0	LZTR1	22	21348256	Frame_Shift_Del	DEL	G	TCGA-44-2656-01A-02D-0969-08	3046799	21348256	29956310	1817	104512											
PPIL2	23759	broad.mit.edu	37	chr22	22048981	22048981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggaggtggggcgtgGcggctgggggccaggcaggc	24	10	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22048981	T	T	22048981	1	4	106	0	1	0	0	0	0	0	0	0	12428	1218	42	3		3	PPIL2	22	22048981	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	700725	22048981	29255585	1818	104513											
MYO18B	84700	broad.mit.edu	37	chr22	26422331	26422331	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaataatattagtgcctgtGcttaggggctctcacaccga	9	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26422331	A	A	26422331	1	1	106	0	1	0	0	0	0	0	0	0	10160	1334	46	4		4	MYO18B	22	26422331	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4373350	26422331	24882235	1819	104514											
SEZ6L	23544	broad.mit.edu	37	chr22	26761403	26761403	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataccaaatcctgtacaagCgactctacctgccaggagag	9	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26761403	A	A	26761403	2	1	106	1	0	0	0	0	0	0	0	1	14256	760	27	3		3	SEZ6L	22	26761403	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	339072	26761403	24543163	1820	104515											
SEC14L3	266629	broad.mit.edu	37	chr22	30865963	30865963	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccccagtgaccttgagtgGtacgtccgtgaaagactgag	13	10	0	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30865963	A	A	30865963	1	1	106	0	1	0	0	0	0	0	0	0	14096	1276	44	4		4	SEC14L3	22	30865963	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4104560	30865963	20438603	1821	104516											
C22orf42	150297	broad.mit.edu	37	chr22	32550243	32550243	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacattacctatattttctaGaggccaaatcccgtgccgtc	6	13	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32550243	T	T	32550243	3	4	106	1	0	0	0	0	1	0	0	0	2171	933	33	3	492	3	C22orf42	22	32550243	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1684280	32550243	18754323	1822	104517											
SLC5A4	6527	broad.mit.edu	37	chr22	32647634	32647634	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccagccttcagagctgtcAgagatacatttctgttcttt	7	11	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32647634	T	T	32647634	1	4	106	0	1	0	0	0	0	0	0	0	14781	203	7	5		5	SLC5A4	22	32647634	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	97391	32647634	18656932	1823	104518											
TMPRSS6	164656	broad.mit.edu	37	chr22	37499653	37499653	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatctcaggtcagctcgcaCcagagggcaggcaccagagc	13	14	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37499653	G	G	37499653	1	3	106	0	1	0	0	0	0	0	0	0	16374	522	18	4		4	TMPRSS6	22	37499653	5'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	4852019	37499653	13804913	1824	104519											
BAIAP2L2	80115	broad.mit.edu	37	chr22	38493913	38493913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctagttacgcccaccccacCaggggctggctgacctcccc	10	19	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38493913	A	A	38493913	1	1	106	0	1	0	0	0	0	0	0	0	1308	609	21	2		2	BAIAP2L2	22	38493913	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	994260	38493913	12810653	1825	104520											
RANGAP1	5905	broad.mit.edu	37	chr22	41657531	41657531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaccttcagggccagaggCttgccttgggcactggattt	13	10	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41657531	A	A	41657531	3	1	106	1	0	0	0	0	1	0	0	0	13141	796	28	3	1273	3	RANGAP1	22	41657531	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	3163618	41657531	9647035	1826	104521											
MEI1	150365	broad.mit.edu	37	chr22	42112002	42112002	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agttttggtggaagatctgtCctgatcctaattgacagaat	10	6	1	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42112002	T	T	42112002	1	4	106	0	1	0	0	0	0	0	0	0	9558	870	30	4		4	MEI1	22	42112002	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	454471	42112002	9192564	1827	104522											
POLDIP3	84271	broad.mit.edu	37	chr22	42981234	42981234	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actagtgaggcctggagccaCtggggagaggacaagaggcc	17	9	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42981234	T	T	42981234	1	4	106	0	1	0	0	0	0	0	0	0	12290	580	20	4		4	POLDIP3	22	42981234	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	869232	42981234	8323332	1828	104523											
PARVG	64098	broad.mit.edu	37	chr22	44585218	44585218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctcacccaccaggaaGgcgcactcatccttctccca	7	18	3	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44585218	T	T	44585218	1	4	106	0	1	0	0	0	0	0	0	0	11564	1015	35	2		2	PARVG	22	44585218	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	1603984	44585218	6719348	1829	104524											
C22orf9	23313	broad.mit.edu	37	chr22	45598869	45598869	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccagctgtgcagcccttAcccgctcgtgcatgggcgaa	11	17	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45598869	C	C	45598869	5	2	106	1	0	0	0	0	0	0	1	0	2173	405	14	5	376	5	C22orf9	22	45598869	Splice_Site	SNP	A	TCGA-44-2656-01A-02D-0969-08	1013651	45598869	5705697	1830	104525											
SMC1B	27127	broad.mit.edu	37	chr22	45802673	45802673	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctttgactattatgccTatcttttccaactctgcaat	5	10	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45802673	A	A	45802673	2	1	106	1	0	0	0	0	0	0	0	1	14896	1512	53	5		5	SMC1B	22	45802673	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	203804	45802673	5501893	1831	104526											
ZBED4	9889	broad.mit.edu	37	chr22	50277734	50277734	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatgcatgtactgtgtgaagGagttcagcagaggcaaaaac	12	6	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50277734	A	A	50277734	3	1	106	1	0	0	0	0	1	0	0	0	17646	1175	41	4	426	4	ZBED4	22	50277734	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	4475061	50277734	1026832	1832	104527											
SAPS2	9701	broad.mit.edu	37	chr22	50861866	50861867	+	Intron	INS	-	G	G													actgctcacagggcctaactINSgggtggtgccttctgtgttt							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50861867	G	G	50861866	6	5	106	0	1	1	1	0	0	0	0	0	13949	1595	55	0		0	SAPS2	22	50861866	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	584132	50861866	442700	1833	104528											
SHANK3	85358	broad.mit.edu	37	chr22	51143400	51143400	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctatcccaggtgaacggGgtgaacgtggtgaaggtcgg	17	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51143400	T	T	51143400	2	4	106	1	0	0	0	0	0	0	0	1	14379	1219	43	2		2	SHANK3	22	51143400	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	281534	51143400	161166	1834	104529											
ARSF	416	broad.mit.edu	37	chrX	3002623	3002623	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggactgcctcctcatgcGggggcacgagatcacggagc	15	13	2	1	rs148764513		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3002623	C	C	3002623	3	2	106	1	0	0	0	0	1	0	0	0	995	1116	39	4	764	4	ARSF	23	3002623	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08		3002623	152267937	1835	104530											
MXRA5	25878	broad.mit.edu	37	chrX	3241316	3241316	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacttgtggttttaatcaAtgggggtacttctgtgccct	12	7	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3241316	C	C	3241316	3	2	106	1	0	0	0	0	1	0	0	0	10097	98	4	5	6088	5	MXRA5	23	3241316	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	238693	3241316	152029244	1836	104531											
HDHD1A	8226	broad.mit.edu	37	chrX	6995465	6995465	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggatgccatgtttccgCaggtggatgatgagtttctc	14	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6995465	A	A	6995465	2	1	106	1	0	0	0	0	0	0	0	1	7089	697	25	3		3	HDHD1A	23	6995465	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	3754149	6995465	148275095	1837	104532											
ARHGAP6	395	broad.mit.edu	37	chrX	11187673	11187673	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcttttgcacaacagcgatGatggccgtgctctcctcagc	9	13	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11187673	T	T	11187673	2	4	106	1	0	0	0	0	0	0	0	1	889	1280	45	3		3	ARHGAP6	23	11187673	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	4192208	11187673	144082887	1838	104533											
FRMPD4	9758	broad.mit.edu	37	chrX	12516994	12516994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttatgagaatgaacataCttaaattaggcactcatagg	8	5	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12516994	A	A	12516994	1	1	106	0	1	0	0	0	0	0	0	0	6119	580	20	3		3	FRMPD4	23	12516994	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	1329321	12516994	142753566	1839	104534											
CTPS2	56474	broad.mit.edu	37	chrX	16716561	16716561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcacctggcaagttaccCtgacatatttttggaaaatg	8	8	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16716561	A	A	16716561	1	1	106	0	1	0	0	0	0	0	0	0	4057	696	24	2		2	CTPS2	23	16716561	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4199567	16716561	138553999	1840	104535											
BEND2	139105	broad.mit.edu	37	chrX	18209221	18209221	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccataactcatttgtggGccagattctgttttgaacaa	8	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18209221	T	T	18209221	2	4	106	1	0	0	0	0	0	0	0	1	1403	1190	42	3		3	BEND2	23	18209221	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	1492660	18209221	137061339	1841	104536											
PPEF1	5475	broad.mit.edu	37	chrX	18824741	18824741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacgtgactaagagcagCcacgtgagtgaagagagtca	12	10	1	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18824741	A	A	18824741	1	1	106	0	1	0	0	0	0	0	0	0	12403	754	26	3		3	PPEF1	23	18824741	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	615520	18824741	136445819	1842	104537											
CNKSR2	22866	broad.mit.edu	37	chrX	21508495	21508495	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactgtttatttttccttaTgaaaacgttattacaaaagg	5	6	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21508495	C	C	21508495	1	2	106	0	1	0	0	0	0	0	0	0	3639	1479	51	5		5	CNKSR2	23	21508495	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	2683754	21508495	133762065	1843	104538											
PHEX	5251	broad.mit.edu	37	chrX	22051348	22051348	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtatagggctgtttgcctGcgttcataggtggtgtatct	14	6	2	0	rs141775674	by1000genomes	TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22051348	C	C	22051348	1	2	106	0	1	0	0	0	0	0	0	0	11914	1334	46	4		4	PHEX	23	22051348	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	542853	22051348	133219212	1844	104539											
FAM48B2	170067	broad.mit.edu	37	chrX	24330389	24330389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgtttggcttggtgtcCcaggcctgacagccagcttc	12	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24330389	A	A	24330389	3	1	106	1	0	0	0	0	1	0	0	0	5625	624	22	2	1412	2	FAM48B2	23	24330389	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	2279041	24330389	130940171	1845	104540											
PCYT1B	9468	broad.mit.edu	37	chrX	24597530	24597530	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacaattctggtaatgatgTccgatgttgagatgccttct	10	7	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24597530	A	A	24597530	3	1	106	1	0	0	0	0	1	0	0	0	11705	1667	58	5	547	5	PCYT1B	23	24597530	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	267141	24597530	130673030	1846	104541											
DCAF8L1	139425	broad.mit.edu	37	chrX	27999351	27999351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaatgtctgaggaggccGccgtcaccgctgctactcca	10	14	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27999351	T	T	27999351	3	4	106	1	0	0	0	0	1	0	0	0	4310	1087	38	3	1705	3	DCAF8L1	23	27999351	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	3401821	27999351	127271209	1847	104542											
CXorf22	170063	broad.mit.edu	37	chrX	35966294	35966295	+	Intron	INS	-	T	T													ggctgcattcaaagccgtccINStgggctgcatgtggcccatg							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35966295	T	T	35966294	6	5	106	0	1	1	1	0	0	0	0	0	4135	696	24	0		0	CXorf22	23	35966294	Intron	INS	-	TCGA-44-2656-01A-02D-0969-08	7966943	35966294	119304266	1848	104543											
FAM47C	442444	broad.mit.edu	37	chrX	37026967	37026967	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaggaagctggaggacGcaggctcttgtgagggccag	18	8	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37026967	C	C	37026967	3	2	106	1	0	0	0	0	1	0	0	0	5622	1087	38	4	486	4	FAM47C	23	37026967	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1060673	37026967	118243593	1849	104544											
FAM47C	442444	broad.mit.edu	37	chrX	37027514	37027514	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgtccagtctccaccCagagcctcccgagactggag	11	15	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37027514	T	T	37027514	3	4	106	1	0	0	0	0	1	0	0	0	5622	594	21	4	1033	4	FAM47C	23	37027514	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	547	37027514	118243046	1850	104545											
RPGR	6103	broad.mit.edu	37	chrX	38146246	38146246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccctctcctcatcttgcCagtgttctgctcctgaacta	5	16	5	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38146246	A	A	38146246	3	1	106	1	0	0	0	0	1	0	0	0	13659	595	21	2	2015	2	RPGR	23	38146246	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	1118732	38146246	117124314	1851	104546											
MID1IP1	58526	broad.mit.edu	37	chrX	38664295	38664295	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaacatggaccagacggtGatggtgcccagcttgctgcg	13	11	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38664295	A	A	38664295	2	1	106	1	0	0	0	0	0	0	0	1	9670	1277	45	4		4	MID1IP1	23	38664295	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	518049	38664295	116606265	1852	104547											
USP9X	8239	broad.mit.edu	37	chrX	41043661	41043661	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttccaggtagtctatgcCttgttaatgcctgctggtgc	10	9	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41043661	T	T	41043661	2	4	106	1	0	0	0	0	0	0	0	1	17217	668	24	4		4	USP9X	23	41043661	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	2379366	41043661	114226899	1853	104548											
DDX3X	1654	broad.mit.edu	37	chrX	41207058	41207058	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actataccttgtgtagcttcAagaactcgcagtacattacc	6	11	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41207058	G	G	41207058	1	3	106	0	1	0	0	0	0	0	0	0	4391	145	5	5		5	DDX3X	23	41207058	3'UTR	SNP	A	TCGA-44-2656-01A-02D-0969-08	163397	41207058	114063502	1854	104549											
TIMM17B	10245	broad.mit.edu	37	chrX	48751400	48751400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggcagccagcacagccCcggtcaatgctccactggtg	13	15	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48751400	A	A	48751400	3	1	106	1	0	0	0	0	1	0	0	0	16032	623	22	2	231	2	TIMM17B	23	48751400	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	7544342	48751400	106519160	1855	104550											
CACNA1F	778	broad.mit.edu	37	chrX	49069089	49069089	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgagaagtgtgaaatggGggcgaggtatggtcaaaggg	20	3	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49069089	A	A	49069089	1	1	106	0	1	0	0	0	0	0	0	0	2569	1247	43	4		4	CACNA1F	23	49069089	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	317689	49069089	106201471	1856	104551											
GAGE1	2543	broad.mit.edu	37	chrX	49369851	49369851	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttctaataagactgtagaCacacatatgatataatcatc	4	7	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49369851	G	G	49369851	1	3	106	0	1	0	0	0	0	0	0	0	6246	493	17	4		4	GAGE1	23	49369851	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	300762	49369851	105900709	1857	104552											
DGKK	139189	broad.mit.edu	37	chrX	50146627	50146627	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaagagaaaagatgggtgtGaatctggtgacagtgaggat	17	2	1	5			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50146627	T	T	50146627	1	4	106	0	1	0	0	0	0	0	0	0	4512	1305	45	3		3	DGKK	23	50146627	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	776776	50146627	105123933	1858	104553											
PAGE5	90737	broad.mit.edu	37	chrX	55247100	55247100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggtaggccgtggagggGgtagatcgcctgaagatggt	20	5	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55247100	T	T	55247100	1	4	106	0	1	0	0	0	0	0	0	0	11487	1247	43	2		2	PAGE5	23	55247100	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5100473	55247100	100023460	1859	104554											
ZC4H2	55906	broad.mit.edu	37	chrX	64139003	64139003	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttggagctgttgggcggcAgcggctgcagcggccaggga	19	10	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64139003	T	T	64139003	2	4	106	1	0	0	0	0	0	0	0	1	17704	175	7	5		5	ZC4H2	23	64139003	Silent	SNP	A	TCGA-44-2656-01A-02D-0969-08	8891903	64139003	91131557	1860	104555											
ZC4H2	55906	broad.mit.edu	37	chrX	64139945	64139945	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtatgttgtagggactgGgggcaggtagcttactccaa	16	6	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64139945	A	A	64139945	1	1	106	0	1	0	0	0	0	0	0	0	17704	1247	43	4		4	ZC4H2	23	64139945	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	942	64139945	91130615	1861	104556											
HEPH	9843	broad.mit.edu	37	chrX	65409397	65409397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagatttaaagaagataatAcataggtcaacacagtgtgc	9	5	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65409397	T	T	65409397	1	4	106	0	1	0	0	0	0	0	0	0	7121	406	14	5		5	HEPH	23	65409397	Intron	SNP	A	TCGA-44-2656-01A-02D-0969-08	1269452	65409397	89861163	1862	104557											
HEPH	9843	broad.mit.edu	37	chrX	65417580	65417580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaaagtaacataccgctgGacagtcccccctcatgccgg	10	14	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65417580	T	T	65417580	3	4	106	1	0	0	0	0	1	0	0	0	7121	1183	41	3	1757	3	HEPH	23	65417580	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	8183	65417580	89852980	1863	104558											
EDA2R	60401	broad.mit.edu	37	chrX	65824892	65824892	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcataaagcaagctcacctGggcaaacagtccccacagac	7	15	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65824892	A	A	65824892	2	1	106	1	0	0	0	0	0	0	0	1	4944	1335	47	4		4	EDA2R	23	65824892	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	407312	65824892	89445668	1864	104559											
GJB1	2705	broad.mit.edu	37	chrX	70443680	70443680	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgctggtggtggctgcagaGagtgtgtggggtgatgagaa	21	3	0	3	rs116840816		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70443680	T	T	70443680	3	4	106	1	0	0	0	0	1	0	0	0	6471	933	33	3	125	3	GJB1	23	70443680	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	4618788	70443680	84826880	1865	104560											
NHSL2	340527	broad.mit.edu	37	chrX	71360426	71360426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtaccaaaaaaacccagcGtgctgtacctgcctctcact	6	16	1	0	rs140270842		TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71360426	T	T	71360426	3	4	106	1	0	0	0	0	1	0	0	0	10507	1145	40	3	3050	3	NHSL2	23	71360426	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	916746	71360426	83910134	1866	104561											
CDX4	1046	broad.mit.edu	37	chrX	72667007	72667007	+	5'Flank	DEL	A	-	-													aactacgtactgataagtttAttctctgctgcttctcaaag							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72667007	-	-	72667007	6	5	106	0	1	1	0	1	0	0	0	0	3214	464	16	0		0	CDX4	23	72667007	5'Flank	DEL	A	TCGA-44-2656-01A-02D-0969-08	1306581	72667007	82603553	1867	104562											
TBX22	50945	broad.mit.edu	37	chrX	79277847	79277847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaagaaaactccaagacCcaatacaggcggagcagcct	9	12	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79277847	A	A	79277847	3	1	106	1	0	0	0	0	1	0	0	0	15780	623	22	2	81	2	TBX22	23	79277847	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	6610840	79277847	75992713	1868	104563											
BRWD3	254065	broad.mit.edu	37	chrX	79936970	79936970	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcatcatcaagtagataTagtgaaagcccttcagcagc	9	10	4	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79936970	C	C	79936970	2	2	106	1	0	0	0	0	0	0	0	1	1535	1393	49	5		5	BRWD3	23	79936970	Silent	SNP	T	TCGA-44-2656-01A-02D-0969-08	659123	79936970	75333590	1869	104564											
SATL1	340562	broad.mit.edu	37	chrX	84349256	84349256	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaggaagggagaagaaaggGtgtagaaaggttggttgaat	17	1	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84349256	A	A	84349256	1	1	106	0	1	0	0	0	0	0	0	0	13967	1276	44	4		4	SATL1	23	84349256	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	4412286	84349256	70921304	1870	104565											
DACH2	117154	broad.mit.edu	37	chrX	85404014	85404014	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgttgagcaggtccggatCctccgcgggctgggggccat	16	12	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85404014	A	A	85404014	2	1	106	1	0	0	0	0	0	0	0	1	4254	845	30	3		3	DACH2	23	85404014	Silent	SNP	C	TCGA-44-2656-01A-02D-0969-08	1054758	85404014	69866546	1871	104566											
PCDH11X	27328	broad.mit.edu	37	chrX	91237944	91237944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccaccaaactctgtccCgtcattcacattagtgtgaa	8	12	3	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91237944	A	A	91237944	1	1	106	0	1	0	0	0	0	0	0	0	11602	667	23	1		1	PCDH11X	23	91237944	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	5833930	91237944	64032616	1872	104567											
PCDH11X	27328	broad.mit.edu	37	chrX	91456340	91456340	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattttacttttaacaaacaGcttaaaatacttctattttc	1	7	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91456340	A	A	91456340	1	1	106	0	1	0	0	0	0	0	0	0	11602	986	34	4		4	PCDH11X	23	91456340	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	218396	91456340	63814220	1873	104568											
TNMD	64102	broad.mit.edu	37	chrX	99852725	99852725	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttaatgttcccagcatttaGaggctacatttctaggaaaa	8	7	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99852725	C	C	99852725	1	2	106	0	1	0	0	0	0	0	0	0	16445	957	33	4		4	TNMD	23	99852725	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	8396385	99852725	55417835	1874	104569											
TRMT2B	79979	broad.mit.edu	37	chrX	100274269	100274269	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaaaatagctgttcatccTtacgcagtccggcacgggct	9	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100274269	C	C	100274269	1	2	106	0	1	0	0	0	0	0	0	0	16691	1624	56	5		5	TRMT2B	23	100274269	Intron	SNP	T	TCGA-44-2656-01A-02D-0969-08	421544	100274269	54996291	1875	104570											
TRMT2B	79979	broad.mit.edu	37	chrX	100278506	100278506	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgatagccattgtgtgccCttggctattggtgcggactg	14	8	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100278506	T	T	100278506	3	4	106	1	0	0	0	0	1	0	0	0	16691	681	24	4	833	4	TRMT2B	23	100278506	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	4237	100278506	54992054	1876	104571											
DRP2	1821	broad.mit.edu	37	chrX	100486548	100486548	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttttctaggtcttgactcGaaatctctctgtattgcttt	7	9	4	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100486548	T	T	100486548	1	4	106	0	1	0	0	0	0	0	0	0	4804	1073	37	3		3	DRP2	23	100486548	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	208042	100486548	54784012	1877	104572											
TCEAL6	158931	broad.mit.edu	37	chrX	101396374	101396374	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagacaaataagagacatggGagactgagggcatggggtgg	18	4	0	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101396374	C	C	101396374	1	2	106	0	1	0	0	0	0	0	0	0	15797	1189	41	4		4	TCEAL6	23	101396374	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	909826	101396374	53874186	1878	104573											
TEX13B	56156	broad.mit.edu	37	chrX	107224574	107224574	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgcctgctacaatagctccGaggggctgcctgaagcctcc	11	14	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107224574	A	A	107224574	2	1	106	1	0	0	0	0	0	0	0	1	15899	1045	37	4		4	TEX13B	23	107224574	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	5828200	107224574	48045986	1879	104574											
TEX13B	56156	broad.mit.edu	37	chrX	107225113	107225113	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcggttttgtaactgccccTgcctgtgggcaaagcgcaca	12	12	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107225113	A	A	107225113	3	1	106	1	0	0	0	0	1	0	0	0	15899	1580	55	5	701	5	TEX13B	23	107225113	Missense_Mutation	SNP	T	TCGA-44-2656-01A-02D-0969-08	539	107225113	48045447	1880	104575											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698756	111698756	+	Frame_Shift_Del	DEL	C	-	-													agaaggccagctgcctctcaCcccagccaaacgagcccgcc							TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111698756	-	-	111698756	7	5	106	1	0	1	0	1	0	0	0	0	17710	507	18	0	802	0	ZCCHC16	23	111698756	Frame_Shift_Del	DEL	C	TCGA-44-2656-01A-02D-0969-08	4473643	111698756	43571804	1881	104576											
LHFPL1	340596	broad.mit.edu	37	chrX	111874563	111874563	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggctatgctaatgacagtCagatgacaaatggcctaatc	9	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111874563	A	A	111874563	1	1	106	0	1	0	0	0	0	0	0	0	8836	841	29	3		3	LHFPL1	23	111874563	3'UTR	SNP	C	TCGA-44-2656-01A-02D-0969-08	175807	111874563	43395997	1882	104577											
HTR2C	3358	broad.mit.edu	37	chrX	114082456	114082456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgcttcctaaatttcaCtttctttaaaaggtttagat	4	6	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114082456	A	A	114082456	1	1	106	0	1	0	0	0	0	0	0	0	7513	580	20	3		3	HTR2C	23	114082456	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	2207893	114082456	41188104	1883	104578											
CXorf61	203413	broad.mit.edu	37	chrX	115593113	115593113	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattgctgttaattaacccaGaagaagagggtctcactagt	9	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115593113	T	T	115593113	3	4	106	1	0	0	0	0	1	0	0	0	4149	942	33	3	208	3	CXorf61	23	115593113	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1510657	115593113	39677447	1884	104579											
LONRF3	79836	broad.mit.edu	37	chrX	118147138	118147138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggatggctacaacacagccGacattgaatacattgaagac	10	9	0	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118147138	T	T	118147138	3	4	106	1	0	0	0	0	1	0	0	0	8983	1058	37	3	1982	3	LONRF3	23	118147138	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	2554025	118147138	37123422	1885	104580											
ATP1B4	23439	broad.mit.edu	37	chrX	119512560	119512560	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaaatgacatccgatccAtcagttactacccagagtcg	7	11	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119512560	G	G	119512560	3	3	106	1	0	0	0	0	1	0	0	0	1139	217	8	5	870	5	ATP1B4	23	119512560	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	1365422	119512560	35758000	1886	104581											
LAMP2	3920	broad.mit.edu	37	chrX	119580319	119580319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaaaaggtacaggttaGctataaaagtggccagcaaa	12	5	0	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119580319	T	T	119580319	1	4	106	0	1	0	0	0	0	0	0	0	8690	986	34	3		3	LAMP2	23	119580319	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	67759	119580319	35690241	1887	104582											
STAG2	10735	broad.mit.edu	37	chrX	123156495	123156495	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgatagcagctccagaAataccaactgattttaatct	6	8	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123156495	T	T	123156495	3	4	106	1	0	0	0	0	1	0	0	0	15361	11	1	5	20	5	STAG2	23	123156495	Missense_Mutation	SNP	A	TCGA-44-2656-01A-02D-0969-08	3576176	123156495	32114065	1888	104583											
OCRL	4952	broad.mit.edu	37	chrX	128722833	128722833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtggcctttctcctggaGctcctttcccttgacttaag	9	12	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128722833	T	T	128722833	1	4	106	0	1	0	0	0	0	0	0	0	10918	986	34	3		3	OCRL	23	128722833	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	5566338	128722833	26547727	1889	104584											
FRMD7	90167	broad.mit.edu	37	chrX	131227988	131227988	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaccctaacacagtgatggGcatgtgtggggagctcagct	13	9	1	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131227988	C	C	131227988	1	2	106	0	1	0	0	0	0	0	0	0	6115	1218	42	4		4	FRMD7	23	131227988	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	2505155	131227988	24042572	1890	104585											
SAGE1	55511	broad.mit.edu	37	chrX	134992775	134992775	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaagcaggcatattttcatGaatggtagaaggtaattttg	10	4	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134992775	C	C	134992775	1	2	106	0	1	0	0	0	0	0	0	0	13920	1305	45	4		4	SAGE1	23	134992775	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	3764787	134992775	20277785	1891	104586											
FHL1	2273	broad.mit.edu	37	chrX	135288623	135288623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgactgccactactgcaGggatcccttgcaggggaaga	13	10	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135288623	T	T	135288623	3	4	106	1	0	0	0	0	1	0	0	0	5935	1000	35	2	151	2	FHL1	23	135288623	Missense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	295848	135288623	19981937	1892	104587											
GPR112	139378	broad.mit.edu	37	chrX	135429796	135429796	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacaaaaatttccagtcacCaaacacattcgccttcagag	4	14	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135429796	T	T	135429796	4	4	106	1	0	0	0	0	0	1	0	0	6694	595	21	4	3941	4	GPR112	23	135429796	Nonsense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	141173	135429796	19840764	1893	104588											
SPANXC	64663	broad.mit.edu	37	chrX	140336459	140336459	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttgttgtttgagccgCccccgctctgtgtgtctttc	11	12	2	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140336459	T	T	140336459	1	4	106	0	1	0	0	0	0	0	0	0	15103	754	26	4		4	SPANXC	23	140336459	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	4906663	140336459	14934101	1894	104589											
MAGEC3	139081	broad.mit.edu	37	chrX	140983002	140983002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaggcggagaggtgggGggtggtttttccatggagag	22	3	0	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140983002	T	T	140983002	1	4	106	0	1	0	0	0	0	0	0	0	9274	1247	43	2		2	MAGEC3	23	140983002	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	646543	140983002	14287558	1895	104590											
MAGEC1	9947	broad.mit.edu	37	chrX	140995285	140995285	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccaaattcctcagagtcctCttgagggagaggactccctg	10	12	2	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995285	A	A	140995285	3	1	106	1	0	0	0	0	1	0	0	0	9272	913	32	3	2101	3	MAGEC1	23	140995285	Missense_Mutation	SNP	C	TCGA-44-2656-01A-02D-0969-08	12283	140995285	14275275	1896	104591											
AFF2	2334	broad.mit.edu	37	chrX	147743879	147743879	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagattggagaagttgaaGagtcaaacccatctgcaaag	10	9	2	4			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147743879	T	T	147743879	4	4	106	1	0	0	0	0	0	1	0	0	357	943	33	3	641	3	AFF2	23	147743879	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	6748594	147743879	7526681	1897	104592											
AFF2	2334	broad.mit.edu	37	chrX	147967382	147967382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatgatttagaaaatatGccttctaactcaaacaccac	6	9	2	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147967382	T	T	147967382	1	4	106	0	1	0	0	0	0	0	0	0	357	1334	46	3		3	AFF2	23	147967382	Intron	SNP	G	TCGA-44-2656-01A-02D-0969-08	223503	147967382	7303178	1898	104593											
GABRE	2564	broad.mit.edu	37	chrX	151131077	151131077	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaacagaggcgttcgtcGtaccaggtctgggagaagat	14	7	1	3			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151131077	A	A	151131077	2	1	106	1	0	0	0	0	0	0	0	1	6230	1140	40	4		4	GABRE	23	151131077	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	3163695	151131077	4139483	1899	104594											
MAGEA12	4111	broad.mit.edu	37	chrX	151896836	151896836	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacattatggaagttaaaCtgctttacttaaagtcaact	5	8	1	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151896836	T	T	151896836	1	4	106	0	1	0	0	0	0	0	0	0	9254	580	20	4		4	MAGEA12	23	151896836	Intron	SNP	C	TCGA-44-2656-01A-02D-0969-08	765759	151896836	3373724	1900	104595											
ATP2B3	492	broad.mit.edu	37	chrX	152814180	152814180	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgtggaaggccggacatgGctggcagagtgcacgccggt	18	10	0	1			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152814180	A	A	152814180	4	1	106	1	0	0	0	0	0	1	0	0	1145	1212	42	4	1236	4	ATP2B3	23	152814180	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	917344	152814180	2456380	1901	104596											
PDZD4	57595	broad.mit.edu	37	chrX	153068740	153068740	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacaatctcTataggagagtgagggccggg	11	11	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153068740	A	A	153068740	1	1	106	0	1	0	0	0	0	0	0	0	11797	1537	53	5		5	PDZD4	23	153068740	3'UTR	SNP	T	TCGA-44-2656-01A-02D-0969-08	254560	153068740	2201820	1902	104597											
F8	2157	broad.mit.edu	37	chrX	154157069	154157069	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtacgagttatttcccgttGatggcgtttcaagactggtg	12	7	1	2			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154157069	A	A	154157069	4	1	106	1	0	0	0	0	0	1	0	0	5393	1299	45	4	2139	4	F8	23	154157069	Nonsense_Mutation	SNP	G	TCGA-44-2656-01A-02D-0969-08	1088329	154157069	1113491	1903	104598											
RAB39B	116442	broad.mit.edu	37	chrX	154490316	154490316	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcagcagccagtttctcGgcctcgtggcgagtcacttg	12	12	2	0			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154490316	T	T	154490316	2	4	106	1	0	0	0	0	0	0	0	1	13038	1103	39	1		1	RAB39B	23	154490316	Silent	SNP	G	TCGA-44-2656-01A-02D-0969-08	333247	154490316	780244	1904	104599											
MORN1	79906	broad.mit.edu	37	chr1	2319565	2319565	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtaggccaggcctctcacGgcacaaagcttcccgtctac	10	16	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2319565	A	A	2319565	1	1	107	0	1	0	0	0	0	0	0	0	9802	1131	39	4		4	MORN1	1	2319565	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08		2319565	246931056	1	104600											
MMEL1	79258	broad.mit.edu	37	chr1	2526822	2526822	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtggggaggagggactggtCagtgggtgccccactgcgga	20	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2526822	T	T	2526822	1	4	107	0	1	0	0	0	0	0	0	0	9739	841	29	4		4	MMEL1	1	2526822	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	207257	2526822	246723799	2	104601											
MMEL1	79258	broad.mit.edu	37	chr1	2527912	2527912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcaggtgcccctgagcCtgggcggggtgggagtctca	20	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2527912	A	A	2527912	1	1	107	0	1	0	0	0	0	0	0	0	9739	696	24	2		2	MMEL1	1	2527912	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1090	2527912	246722709	3	104602											
ACTRT2	140625	broad.mit.edu	37	chr1	2938177	2938177	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaagagctgtgggatcCcctattgcatcacaaagcgg	14	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2938177	A	A	2938177	1	1	107	0	1	0	0	0	0	0	0	0	219	638	22	2		2	ACTRT2	1	2938177	5'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	410265	2938177	246312444	4	104603											
DFFB	1677	broad.mit.edu	37	chr1	3786364	3786364	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtgccctttatcctgGggccacccggctggcctgtg	14	14	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3786364	C	C	3786364	1	2	107	0	1	0	0	0	0	0	0	0	4493	1247	43	4		4	DFFB	1	3786364	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	848187	3786364	245464257	5	104604											
CHD5	26038	broad.mit.edu	37	chr1	6181341	6181341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaggcctggggcctcaCcaggaacggagggcggggaa	17	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6181341	A	A	6181341	1	1	107	0	1	0	0	0	0	0	0	0	3359	522	18	3		3	CHD5	1	6181341	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2394977	6181341	243069280	6	104605											
CHD5	26038	broad.mit.edu	37	chr1	6215656	6215656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagccctagtgccccgccCacctgaggaactggctgaag	11	15	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6215656	A	A	6215656	1	1	107	0	1	0	0	0	0	0	0	0	3359	609	21	2		2	CHD5	1	6215656	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	34315	6215656	243034965	7	104606											
CLSTN1	22883	broad.mit.edu	37	chr1	9801204	9801204	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatcttggatggatggagCgggtaatcctcagtcacaga	12	8	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9801204	A	A	9801204	2	1	107	1	0	0	0	0	0	0	0	1	3593	755	27	3		3	CLSTN1	1	9801204	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	3585548	9801204	239449417	8	104607											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12251008	12251008	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagacctctggcccttgtttCctcaggccaacatgcaaaag	9	13	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12251008	T	T	12251008	1	4	107	0	1	0	0	0	0	0	0	0	16417	870	30	4		4	TNFRSF1B	1	12251008	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2449804	12251008	236999613	9	104608											
CLCNKA	1187	broad.mit.edu	37	chr1	16355272	16355272	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcaagcctgtgtactccGctctggccaccttgcttctc	8	16	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16355272	A	A	16355272	3	1	107	1	0	0	0	0	1	0	0	0	3500	1087	38	4	1023	4	CLCNKA	1	16355272	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4104264	16355272	232895349	10	104609											
NBPF1	55672	broad.mit.edu	37	chr1	16901210	16901210	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgagccaggtgggacagaGatgacagaagattaaacaca	13	6	0	5			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16901210	T	T	16901210	1	4	107	0	1	0	0	0	0	0	0	0	10286	957	33	3		3	NBPF1	1	16901210	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	545938	16901210	232349411	11	104610											
NBPF1	55672	broad.mit.edu	37	chr1	16916736	16916736	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaagttgacaagatgattCaaccacaacgaagtggagtc	11	7	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16916736	G	G	16916736	1	3	107	0	1	0	0	0	0	0	0	0	10286	841	29	4		4	NBPF1	1	16916736	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	15526	16916736	232333885	12	104611											
PLA2G2A	5320	broad.mit.edu	37	chr1	20301965	20301965	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattcagaagagaccccccgGagtacagcttctttggttaa	9	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20301965	T	T	20301965	1	4	107	0	1	0	0	0	0	0	0	0	12090	1189	41	3		3	PLA2G2A	1	20301965	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	3385229	20301965	228948656	13	104612											
C1QB	713	broad.mit.edu	37	chr1	22986035	22986035	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgatatctcccaggcccagcTcagctgcaccgggcccccag	10	19	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22986035	G	G	22986035	3	3	107	1	0	0	0	0	1	0	0	0	1975	1551	54	5	88	5	C1QB	1	22986035	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	2684070	22986035	226264586	14	104613											
HDAC1	3065	broad.mit.edu	37	chr1	32796290	32796290	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaatctaactatcaaaggtGagaccaggtagcacaaggat	9	8	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32796290	C	C	32796290	1	2	107	0	1	0	0	0	0	0	0	0	7071	1305	45	4		4	HDAC1	1	32796290	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	9810255	32796290	216454331	15	104614											
CSMD2	114784	broad.mit.edu	37	chr1	34257917	34257917	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggaacattgcaggatactGtctttgctgtagtatggtct	11	6	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34257917	C	C	34257917	1	2	107	0	1	0	0	0	0	0	0	0	3979	1392	48	4		4	CSMD2	1	34257917	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1461627	34257917	214992704	16	104615											
DLGAP3	58512	broad.mit.edu	37	chr1	35370069	35370069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcggccttccgacccgcCcgagcgccccttgaagctca	11	19	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35370069	A	A	35370069	3	1	107	1	0	0	0	0	1	0	0	0	4601	623	22	2	2063	2	DLGAP3	1	35370069	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1112152	35370069	213880552	17	104616											
MACF1	23499	broad.mit.edu	37	chr1	39945556	39945556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacccccttccgctcacggGgtcgaaggtccaaaccatct	9	16	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39945556	T	T	39945556	3	4	107	1	0	0	0	0	1	0	0	0	9232	1232	43	2	22320	2	MACF1	1	39945556	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4575487	39945556	209305065	18	104617											
WDR65	149465	broad.mit.edu	37	chr1	43638419	43638419	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagcagaactgtttggcggGagatcatgtcagccgtggta	14	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43638419	C	C	43638419	1	2	107	0	1	0	0	0	0	0	0	0	17443	1189	41	4		4	WDR65	1	43638419	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	3692863	43638419	205612202	19	104618											
MPL	4352	broad.mit.edu	37	chr1	43804520	43804520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagaccccctgaggcaccCcaagactcccttgtcattcc	6	19	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43804520	A	A	43804520	1	1	107	0	1	0	0	0	0	0	0	0	9824	638	22	2		2	MPL	1	43804520	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	166101	43804520	205446101	20	104619											
HYI	81888	broad.mit.edu	37	chr1	43918609	43918609	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgctgccaaatacaccagGcctcctcttgccacagcacc	6	18	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43918609	A	A	43918609	1	1	107	0	1	0	0	0	0	0	0	0	7538	1218	42	4		4	HYI	1	43918609	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	114089	43918609	205332012	21	104620											
BSND	7809	broad.mit.edu	37	chr1	55474212	55474212	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaggaacctgagaaggaaGaggaagacctgtactatggg	17	5	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55474212	A	A	55474212	3	1	107	1	0	0	0	0	1	0	0	0	1540	943	33	4	888	4	BSND	1	55474212	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	11555603	55474212	193776409	22	104621											
USP24	23358	broad.mit.edu	37	chr1	55566576	55566576	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatgtccaaagagagacTgcacttggtaaaacacgcta	8	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55566576	A	A	55566576	3	1	107	1	0	0	0	0	1	0	0	0	17181	1580	55	5	2755	5	USP24	1	55566576	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	92364	55566576	193684045	23	104622											
C1orf168	199920	broad.mit.edu	37	chr1	57209875	57209875	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatctcctccgagatggaActtgtcttagagacccctag	8	11	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57209875	G	G	57209875	2	3	107	1	0	0	0	0	0	0	0	1	2032	40	2	5		5	C1orf168	1	57209875	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	1643299	57209875	192040746	24	104623											
C1orf168	199920	broad.mit.edu	37	chr1	57219534	57219534	+	Frame_Shift_Del	DEL	G	-	-													tgaaaacatggtttgaatatGgttccttttctgtgttttta							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57219534	-	-	57219534	7	5	107	1	0	1	0	1	0	0	0	0	2032	1348	47	0	1033	0	C1orf168	1	57219534	Frame_Shift_Del	DEL	G	TCGA-44-2657-01A-01D-1105-08	9659	57219534	192031087	25	104624											
DAB1	1600	broad.mit.edu	37	chr1	57756646	57756646	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagccctacctttctttctGgagtctttcttggcgctggt	9	12	5	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57756646	T	T	57756646	2	4	107	1	0	0	0	0	0	0	0	1	4250	1335	47	2		2	DAB1	1	57756646	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	537112	57756646	191493975	26	104625											
IL23R	149233	broad.mit.edu	37	chr1	67685289	67685289	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaccaattttacatatgtGcaacagtcagaattctactt	5	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67685289	T	T	67685289	2	4	107	1	0	0	0	0	0	0	0	1	7746	1306	46	3		3	IL23R	1	67685289	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	9928643	67685289	181565332	27	104626											
RPE65	6121	broad.mit.edu	37	chr1	68896915	68896915	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatatgctttacttgacTagcatatactcaaagcactg	6	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68896915	A	A	68896915	1	1	107	0	1	0	0	0	0	0	0	0	13656	1537	53	5		5	RPE65	1	68896915	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	1211626	68896915	180353706	28	104627											
LRRC7	57554	broad.mit.edu	37	chr1	70339161	70339161	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatcttagcatctgaagatCcagagtgtgccccttgccca	8	13	3	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70339161	A	A	70339161	1	1	107	0	1	0	0	0	0	0	0	0	9107	870	30	3		3	LRRC7	1	70339161	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1442246	70339161	178911460	29	104628											
TNNI3K	51086	broad.mit.edu	37	chr1	74801678	74801678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttttatactgatttcaaAtgaataaatcctttaggtaa	4	4	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74801678	G	G	74801678	1	3	107	0	1	0	0	0	0	0	0	0	16452	116	4	5		5	TNNI3K	1	74801678	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	4462517	74801678	174448943	30	104629											
CLCA1	1179	broad.mit.edu	37	chr1	86954871	86954871	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggtgagggatgatttgctGagacccccggtattgtctct	13	9	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86954871	A	A	86954871	1	1	107	0	1	0	0	0	0	0	0	0	3488	1305	45	4		4	CLCA1	1	86954871	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	12153193	86954871	162295750	31	104630											
CLCA4	22802	broad.mit.edu	37	chr1	87012771	87012771	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcctcttgaacaaaccaAcatttgagccaggaataact	6	10	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87012771	C	C	87012771	1	2	107	0	1	0	0	0	0	0	0	0	3490	58	2	5		5	CLCA4	1	87012771	5'UTR	SNP	A	TCGA-44-2657-01A-01D-1105-08	57900	87012771	162237850	32	104631											
GBP5	115362	broad.mit.edu	37	chr1	89730452	89730452	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctccctctcactggtccTgtgcaggtccagcagctcct	10	17	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89730452	C	C	89730452	3	2	107	1	0	0	0	0	1	0	0	0	6339	1579	55	5	714	5	GBP5	1	89730452	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	2717681	89730452	159520169	33	104632											
VCAM1	7412	broad.mit.edu	37	chr1	101185531	101185531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagcattcaattttagccCtggttttggcttcagtcagt	9	8	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101185531	A	A	101185531	1	1	107	0	1	0	0	0	0	0	0	0	17264	696	24	2		2	VCAM1	1	101185531	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	11455079	101185531	148065090	34	104633											
COL11A1	1301	broad.mit.edu	37	chr1	103463891	103463891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccatcagcaccaggaagtCcagcaagtcctggttttcct	9	14	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103463891	A	A	103463891	3	1	107	1	0	0	0	0	1	0	0	0	3699	855	30	3	3421	3	COL11A1	1	103463891	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2278360	103463891	145786730	35	104634											
VAV3	10451	broad.mit.edu	37	chr1	108311136	108311136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgccatgaaatactacCaggaaagaagaagaaaatag	11	5	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108311136	A	A	108311136	1	1	107	0	1	0	0	0	0	0	0	0	17260	609	21	2		2	VAV3	1	108311136	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	4847245	108311136	140939485	36	104635											
AKNAD1	254268	broad.mit.edu	37	chr1	109395169	109395169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatttaagacttcaaggcCatccttttttgaggtaaaac	7	7	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109395169	A	A	109395169	3	1	107	1	0	0	0	0	1	0	0	0	464	594	21	2	2452	2	AKNAD1	1	109395169	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1084033	109395169	139855452	37	104636											
SLC6A17	388662	broad.mit.edu	37	chr1	110738261	110738261	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttcgtccagcgctccGgaaactactttgtcaccatg	9	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110738261	T	T	110738261	4	4	107	1	0	0	0	0	0	1	0	0	14794	1117	39	1	1580	1	SLC6A17	1	110738261	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1343092	110738261	138512360	38	104637											
SLC6A17	388662	broad.mit.edu	37	chr1	110741162	110741162	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggccaccaggcccaggcCaggccctttgcccaagaaga	13	15	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110741162	A	A	110741162	1	1	107	0	1	0	0	0	0	0	0	0	14794	609	21	2		2	SLC6A17	1	110741162	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	2901	110741162	138509459	39	104638											
NBPF10	100132406	broad.mit.edu	37	chr1	145290659	145290659	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaaagggaaagtgttcCcttcagtttgaggacatcac	9	8	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145290659	T	T	145290659	1	4	107	0	1	0	0	0	0	0	0	0	10287	638	22	4		4	NBPF10	1	145290659	5'Flank	SNP	C	TCGA-44-2657-01A-01D-1105-08	34549497	145290659	103959962	40	104639											
NBPF10	100132406	broad.mit.edu	37	chr1	145765545	145765545	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtctcttccatgccacaatCctgtatagaacaattcatat	4	11	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145765545	A	A	145765545	1	1	107	0	1	0	0	0	0	0	0	0	10287	870	30	3		3	NBPF10	1	145765545	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	474886	145765545	103485076	41	104640											
GJA8	2703	broad.mit.edu	37	chr1	147380051	147380051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcggccgctcagctcttgCcttctccctcatttcttcag	7	16	6	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147380051	A	A	147380051	1	1	107	0	1	0	0	0	0	0	0	0	6469	754	26	3		3	GJA8	1	147380051	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1614506	147380051	101870570	42	104641											
FCGR1A	2209	broad.mit.edu	37	chr1	149762690	149762690	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccagtgcctccctgaggaCaggcacatcaggtctcagcc	11	15	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149762690	G	G	149762690	1	3	107	0	1	0	0	0	0	0	0	0	5836	493	17	4		4	FCGR1A	1	149762690	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2382639	149762690	99487931	43	104642											
BOLA1	51027	broad.mit.edu	37	chr1	149871771	149871771	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgctagagcttcgcaaCgagagcggtggccacgcggt	17	10	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149871771	G	G	149871771	3	3	107	1	0	0	0	0	1	0	0	0	1491	535	19	4	161	4	BOLA1	1	149871771	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	109081	149871771	99378850	44	104643											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	107	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-44-2657-01A-01D-1105-08	1870789	151742560	97508061	45	104644											
FLG	2312	broad.mit.edu	37	chr1	152277028	152277028	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcgtagtgggatccctgcCttcctcttctgcttgacccc	9	16	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152277028	T	T	152277028	3	4	107	1	0	0	0	0	1	0	0	0	5979	681	24	4	1855	4	FLG	1	152277028	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	534468	152277028	96973593	46	104645											
FLG	2312	broad.mit.edu	37	chr1	152281162	152281162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtggctctgctgatggGgcccagcttttccctgtgct	12	12	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281162	T	T	152281162	3	4	107	1	0	0	0	0	1	0	0	0	5979	1232	43	2	5989	2	FLG	1	152281162	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4134	152281162	96969459	47	104646											
FLG2	388698	broad.mit.edu	37	chr1	152323527	152323527	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccttcttccagttgtcctGgaccctctctgtgtggattg	9	14	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152323527	C	C	152323527	2	2	107	1	0	0	0	0	0	0	0	1	5980	1335	47	4		4	FLG2	1	152323527	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	42365	152323527	96927094	48	104647											
FLG2	388698	broad.mit.edu	37	chr1	152331316	152331316	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgcttggtgtatttgtaGaaaacatcaattacggtgac	9	6	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152331316	C	C	152331316	3	2	107	1	0	0	0	0	1	0	0	0	5980	933	33	4	7138	4	FLG2	1	152331316	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	7789	152331316	96919305	49	104648											
IL6R	3570	broad.mit.edu	37	chr1	154420481	154420481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgtgagccaccgcgcccAgcccatgctgttcttttaaa	9	14	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154420481	T	T	154420481	1	4	107	0	1	0	0	0	0	0	0	0	7772	203	7	5		5	IL6R	1	154420481	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2089165	154420481	94830140	50	104649											
PYGO2	90780	broad.mit.edu	37	chr1	154933310	154933310	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttataaggttcagcgaaagAacaagaagcaaagcaagaaa	10	5	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154933310	C	C	154933310	1	2	107	0	1	0	0	0	0	0	0	0	12972	261	9	5		5	PYGO2	1	154933310	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	512829	154933310	94317311	51	104650											
TRIM46	80128	broad.mit.edu	37	chr1	155156178	155156178	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccatcccttcaacctcttGctccttaacattccatcctt	1	17	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155156178	C	C	155156178	1	2	107	0	1	0	0	0	0	0	0	0	16646	1334	46	4		4	TRIM46	1	155156178	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	222868	155156178	94094443	52	104651											
ARHGEF2	9181	broad.mit.edu	37	chr1	155921320	155921320	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattgaccaatcgctgtaacGcctcctgaggacagacaggg	12	11	0	3	rs138090439	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155921320	A	A	155921320	3	1	107	1	0	0	0	0	1	0	0	0	905	1087	38	4	763	4	ARHGEF2	1	155921320	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	765142	155921320	93329301	53	104652											
NTRK1	4914	broad.mit.edu	37	chr1	156844567	156844567	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagccactgcaggggtccCcaggggaggatgaggcaggt	17	11	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156844567	G	G	156844567	1	3	107	0	1	0	0	0	0	0	0	0	10801	638	22	4		4	NTRK1	1	156844567	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	923247	156844567	92406054	54	104653											
PEAR1	375033	broad.mit.edu	37	chr1	156877441	156877441	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagggcacttctggcttcttCtgccccagcacccattcttg	8	16	4	0	rs148520058	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156877441	T	T	156877441	2	4	107	1	0	0	0	0	0	0	0	1	11806	912	32	4		4	PEAR1	1	156877441	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	32874	156877441	92373180	55	104654											
PEAR1	375033	broad.mit.edu	37	chr1	156880491	156880491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccacccctcgaacgggaCctgctactgcctggctggct	11	17	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156880491	A	A	156880491	3	1	107	1	0	0	0	0	1	0	0	0	11806	507	18	3	1961	3	PEAR1	1	156880491	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3050	156880491	92370130	56	104655											
FCRL3	115352	broad.mit.edu	37	chr1	157650837	157650837	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgagtgggctcttgagggtCtatcctggaaggcctggacg	17	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157650837	G	G	157650837	3	3	107	1	0	0	0	0	1	0	0	0	5853	913	32	4	329	4	FCRL3	1	157650837	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	770346	157650837	91599784	57	104656											
FCRL3	115352	broad.mit.edu	37	chr1	157659724	157659724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctgagtggagggagctGtacttgagtttcagtggcac	15	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157659724	T	T	157659724	1	4	107	0	1	0	0	0	0	0	0	0	5853	1392	48	3		3	FCRL3	1	157659724	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	8887	157659724	91590897	58	104657											
FCRL2	79368	broad.mit.edu	37	chr1	157739662	157739662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgatacttgctctgcaCgtgaatctgggattggaggc	12	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157739662	A	A	157739662	3	1	107	1	0	0	0	0	1	0	0	0	5852	536	19	3	973	3	FCRL2	1	157739662	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	79938	157739662	91510959	59	104658											
FCRL1	115350	broad.mit.edu	37	chr1	157773941	157773941	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaatgattaatgcggttcGgaatttctggtaagaggcag	12	5	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157773941	A	A	157773941	1	1	107	0	1	0	0	0	0	0	0	0	5851	1131	39	4		4	FCRL1	1	157773941	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	34279	157773941	91476680	60	104659											
CD1B	910	broad.mit.edu	37	chr1	158300979	158300979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacacaggaagtctgacaCatttgactgccttaaggctt	9	9	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158300979	A	A	158300979	1	1	107	0	1	0	0	0	0	0	0	0	3005	493	17	3		3	CD1B	1	158300979	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	527038	158300979	90949642	61	104660											
CD1E	913	broad.mit.edu	37	chr1	158325255	158325255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgtaaagtgctcaatcGctacctagatattaaggaaa	7	8	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158325255	T	T	158325255	3	4	107	1	0	0	0	0	1	0	0	0	3008	1087	38	3	531	3	CD1E	1	158325255	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	24276	158325255	90925366	62	104661											
OR10K2	391107	broad.mit.edu	37	chr1	158390597	158390597	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagctgctgcagcctggcCagggatgagaagccgaggaa	16	10	0	1	rs138054803		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158390597	A	A	158390597	2	1	107	1	0	0	0	0	0	0	0	1	11008	581	21	2		2	OR10K2	1	158390597	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	65342	158390597	90860024	63	104662											
SPTA1	6708	broad.mit.edu	37	chr1	158609396	158609396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagccaacatctctctctcCaatagctgatgcttcttgag	7	13	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158609396	A	A	158609396	3	1	107	1	0	0	0	0	1	0	0	0	15234	593	21	2	2375	2	SPTA1	1	158609396	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	218799	158609396	90641225	64	104663											
SPTA1	6708	broad.mit.edu	37	chr1	158609521	158609521	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgccaggtgaaactgcCtttaaggagaataagatcag	11	7	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158609521	A	A	158609521	1	1	107	0	1	0	0	0	0	0	0	0	15234	696	24	2		2	SPTA1	1	158609521	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	125	158609521	90641100	65	104664											
SPTA1	6708	broad.mit.edu	37	chr1	158617523	158617523	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggtcacctggggaggtacAatagctctgataatcagcct	11	9	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158617523	T	T	158617523	1	4	107	0	1	0	0	0	0	0	0	0	15234	145	5	5		5	SPTA1	1	158617523	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	8002	158617523	90633098	66	104665											
SPTA1	6708	broad.mit.edu	37	chr1	158622503	158622503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatacagaagagtagaggCtgagtgacaaacatagagaa	11	4	0	6			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158622503	A	A	158622503	1	1	107	0	1	0	0	0	0	0	0	0	15234	812	28	3		3	SPTA1	1	158622503	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	4980	158622503	90628118	67	104666											
OR6K6	128371	broad.mit.edu	37	chr1	158725239	158725239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctgtgatttcacacctGtgctgagcttggcctgcaca	9	11	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158725239	T	T	158725239	3	4	107	1	0	0	0	0	1	0	0	0	11298	1377	48	3	636	3	OR6K6	1	158725239	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	102736	158725239	90525382	68	104667											
SLAMF9	89886	broad.mit.edu	37	chr1	159923509	159923509	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctgctgaacctggcagtGgagctgccagagtagcgtaa	16	9	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159923509	A	A	159923509	1	1	107	0	1	0	0	0	0	0	0	0	14484	1363	47	4		4	SLAMF9	1	159923509	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1198270	159923509	89327112	69	104668											
ATP1A4	480	broad.mit.edu	37	chr1	160156218	160156218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccctcactagctctccCatcccacctagtccctccag	4	22	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160156218	A	A	160156218	1	1	107	0	1	0	0	0	0	0	0	0	1135	609	21	2		2	ATP1A4	1	160156218	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	232709	160156218	89094403	70	104669											
LY9	4063	broad.mit.edu	37	chr1	160766164	160766164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaggccagttgcattcCctgcctgggagattcttttt	10	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160766164	A	A	160766164	1	1	107	0	1	0	0	0	0	0	0	0	9189	638	22	2		2	LY9	1	160766164	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	609946	160766164	88484457	71	104670											
ADAMTS4	9507	broad.mit.edu	37	chr1	161161242	161161242	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accattgagggcataggagcCatctggcagcttcagggcca	13	11	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161161242	A	A	161161242	3	1	107	1	0	0	0	0	1	0	0	0	268	594	21	2	317	2	ADAMTS4	1	161161242	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	395078	161161242	88089379	72	104671											
OLFML2B	25903	broad.mit.edu	37	chr1	161953664	161953664	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggttgtagctatccacgGcatacagcaccccacagatg	10	13	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161953664	A	A	161953664	3	1	107	1	0	0	0	0	1	0	0	0	10953	1203	42	4	202	4	OLFML2B	1	161953664	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	792422	161953664	87296957	73	104672											
NOS1AP	9722	broad.mit.edu	37	chr1	162270281	162270281	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acttgatattttgcactcgtCgttttggagcaatcaactcc	7	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162270281	G	G	162270281	1	3	107	0	1	0	0	0	0	0	0	0	10637	899	31	4		4	NOS1AP	1	162270281	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	316617	162270281	86980340	74	104673											
UAP1	6675	broad.mit.edu	37	chr1	162536099	162536099	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaggtattaggcagtgctAcaagggatcaagatcagctc	13	7	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162536099	T	T	162536099	3	4	107	1	0	0	0	0	1	0	0	0	16951	391	14	5	243	5	UAP1	1	162536099	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	265818	162536099	86714522	75	104674											
RGS4	5999	broad.mit.edu	37	chr1	163039278	163039278	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagctgttaaataagatgTgcaaagggcttgcaggtctg	12	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163039278	A	A	163039278	3	1	107	1	0	0	0	0	1	0	0	0	13416	1696	59	5	301	5	RGS4	1	163039278	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	503179	163039278	86211343	76	104675											
NUF2	83540	broad.mit.edu	37	chr1	163298731	163298731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaacagttttaatgtctgGcttcgatctaccatttcacc	5	10	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163298731	T	T	163298731	1	4	107	0	1	0	0	0	0	0	0	0	10842	1218	42	3		3	NUF2	1	163298731	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	259453	163298731	85951890	77	104676											
NUF2	83540	broad.mit.edu	37	chr1	163309231	163309231	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagatggaattcaggagctAcaacaatcactaaatcagga	8	8	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163309231	G	G	163309231	2	3	107	1	0	0	0	0	0	0	0	1	10842	378	14	5		5	NUF2	1	163309231	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	10500	163309231	85941390	78	104677											
ILDR2	387597	broad.mit.edu	37	chr1	166892002	166892002	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagactggcggaaattgcTgtcctcctcatgtagggagc	13	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166892002	A	A	166892002	3	1	107	1	0	0	0	0	1	0	0	0	7780	1580	55	5	892	5	ILDR2	1	166892002	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	3582771	166892002	82358619	79	104678											
TBX19	9095	broad.mit.edu	37	chr1	168215927	168215927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatgtagagcaacattcaGtctacgatggtatgattcca	8	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168215927	T	T	168215927	1	4	107	0	1	0	0	0	0	0	0	0	15776	1044	36	3		3	TBX19	1	168215927	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1323925	168215927	81034694	80	104679											
XCL1	6375	broad.mit.edu	37	chr1	168550395	168550395	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaacaccagaaataacatGatccagaccaagccaacagg	6	13	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168550395	T	T	168550395	3	4	107	1	0	0	0	0	1	0	0	0	17550	1290	45	3	292	3	XCL1	1	168550395	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	334468	168550395	80700226	81	104680											
SELP	6403	broad.mit.edu	37	chr1	169566244	169566244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attacctttgcaggttggtgGagtagctgaccatcttccag	11	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169566244	T	T	169566244	3	4	107	1	0	0	0	0	1	0	0	0	14132	1174	41	3	640	3	SELP	1	169566244	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1015849	169566244	79684377	82	104681											
KIFAP3	22920	broad.mit.edu	37	chr1	170015763	170015763	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaacatcaaatatcaataGtttgataaacttttttttat	2	7	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170015763	C	C	170015763	1	2	107	0	1	0	0	0	0	0	0	0	8381	1044	36	4		4	KIFAP3	1	170015763	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	449519	170015763	79234858	83	104682											
TNN	63923	broad.mit.edu	37	chr1	175092757	175092757	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacgtgtgggcccagaagGgggcccaggagagcaagaag	18	9	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175092757	A	A	175092757	3	1	107	1	0	0	0	0	1	0	0	0	16446	1232	43	4	2914	4	TNN	1	175092757	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5076994	175092757	74157864	84	104683											
TNN	63923	broad.mit.edu	37	chr1	175105921	175105921	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttactcgcacacatgggTtgattgattattggaattcc	9	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175105921	A	A	175105921	1	1	107	0	1	0	0	0	0	0	0	0	16446	1740	60	5		5	TNN	1	175105921	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	13164	175105921	74144700	85	104684											
TNR	7143	broad.mit.edu	37	chr1	175362956	175362956	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccacccatcgaaggaaaatGagaagggctcccactgcacc	9	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175362956	T	T	175362956	4	4	107	1	0	0	0	0	0	1	0	0	16461	1294	45	3	2832	3	TNR	1	175362956	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	257035	175362956	73887665	86	104685											
ASTN1	460	broad.mit.edu	37	chr1	177001817	177001817	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattgcgcaggctctcccGtccgtgcccgccgatcagca	12	17	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001817	T	T	177001817	2	4	107	1	0	0	0	0	0	0	0	1	1068	1144	40	3		3	ASTN1	1	177001817	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	1638861	177001817	72248804	87	104686											
TDRD5	163589	broad.mit.edu	37	chr1	179562680	179562680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgaaactcaatgcataaGggaagacctagtatttattc	7	8	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179562680	T	T	179562680	3	4	107	1	0	0	0	0	1	0	0	0	15855	991	35	2	324	2	TDRD5	1	179562680	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2560863	179562680	69687941	88	104687											
CACNA1E	777	broad.mit.edu	37	chr1	181741180	181741180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagagctgctcctgctaaCcaaaatgtctcttgggctca	9	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181741180	A	A	181741180	1	1	107	0	1	0	0	0	0	0	0	0	2568	522	18	3		3	CACNA1E	1	181741180	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2178500	181741180	67509441	89	104688											
HMCN1	83872	broad.mit.edu	37	chr1	186031738	186031738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgaagtgacaggtatgGgctcagctctcagacttttg	12	8	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186031738	T	T	186031738	1	4	107	0	1	0	0	0	0	0	0	0	7287	1247	43	2		2	HMCN1	1	186031738	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	4290558	186031738	63218883	90	104689											
HMCN1	83872	broad.mit.edu	37	chr1	186114528	186114528	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatctcagattattctgtCttgtagcccatggtaactgg	8	9	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186114528	A	A	186114528	1	1	107	0	1	0	0	0	0	0	0	0	7287	928	32	3		3	HMCN1	1	186114528	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	82790	186114528	63136093	91	104690											
PRG4	10216	broad.mit.edu	37	chr1	186276759	186276759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagctcgcacccaccacCcctgagaagcccgcacccac	8	20	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186276759	A	A	186276759	2	1	107	1	0	0	0	0	0	0	0	1	12587	610	22	2		2	PRG4	1	186276759	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	162231	186276759	62973862	92	104691											
FAM5C	339479	broad.mit.edu	37	chr1	190067913	190067913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcattgctgataaaaatGgcatggacttctattcgtct	8	7	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067913	T	T	190067913	2	4	107	1	0	0	0	0	0	0	0	1	5645	1335	47	2		2	FAM5C	1	190067913	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3791154	190067913	59182708	93	104692											
FAM5C	339479	broad.mit.edu	37	chr1	190250667	190250667	+	Intron	SNP	C	A	A													ggcacaagcacacacaggcaCaaataggttcaaagagccgt							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190250667	A	A	190250667	1	1	107	0	1	0	0	0	0	0	0	0	5645	493	17	3		3	FAM5C	1	190250667	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	182754	190250667	58999954	94	104693	455	2									
FAM5C	339479	broad.mit.edu	37	chr1	190250669	190250669	+	Intron	SNP	A	T	T													cacaagcacacacaggcacaAataggttcaaagagccgtac							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190250669	T	T	190250669	1	4	107	0	1	0	0	0	0	0	0	0	5645	29	1	5		5	FAM5C	1	190250669	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2	190250669	58999952	95	104694	455	2									
RGS13	6003	broad.mit.edu	37	chr1	192613472	192613472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccttagaaaaatgagcaGgcggaattgttggatttgta	11	4	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192613472	T	T	192613472	3	4	107	1	0	0	0	0	1	0	0	0	13405	1000	35	2	10	2	RGS13	1	192613472	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2362803	192613472	56637149	96	104695											
CFH	3075	broad.mit.edu	37	chr1	196621179	196621179	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctgcactaatcacaattCttggaagaggagaactggac	9	9	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196621179	A	A	196621179	1	1	107	0	1	0	0	0	0	0	0	0	3313	928	32	3		3	CFH	1	196621179	5'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	4007707	196621179	52629442	97	104696											
CFHR3	10878	broad.mit.edu	37	chr1	196757589	196757589	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttcctctctttgagatgaTagtgttttacttaaaaatat	6	6	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196757589	C	C	196757589	1	2	107	0	1	0	0	0	0	0	0	0	3316	1421	49	5		5	CFHR3	1	196757589	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	136410	196757589	52493032	98	104697											
IGFN1	91156	broad.mit.edu	37	chr1	201195156	201195156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctgggcatcctccccgGccacgaataccacttcaggg	9	18	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201195156	T	T	201195156	3	4	107	1	0	0	0	0	1	0	0	0	7660	1203	42	3	10773	3	IGFN1	1	201195156	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4437567	201195156	48055465	99	104698											
KLHL12	59349	broad.mit.edu	37	chr1	202887571	202887571	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttggacaggtgtgatctaGgatatattcttgtatctcag	11	5	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202887571	C	C	202887571	1	2	107	0	1	0	0	0	0	0	0	0	8439	1015	35	4		4	KLHL12	1	202887571	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1692415	202887571	46363050	100	104699											
C1orf186	440712	broad.mit.edu	37	chr1	206239421	206239421	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgctggctcagacagagcAgggttgacaaaataccagaa	11	10	1	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206239421	T	T	206239421	2	4	107	1	0	0	0	0	0	0	0	1	2040	175	7	5		5	C1orf186	1	206239421	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	3351850	206239421	43011200	101	104700											
LAMB3	3914	broad.mit.edu	37	chr1	209790690	209790690	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttataaagtgtgcaaagTcctcctctgctcaggacccc	8	13	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209790690	C	C	209790690	1	2	107	0	1	0	0	0	0	0	0	0	8684	1682	58	5		5	LAMB3	1	209790690	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	3551269	209790690	39459931	102	104701											
HSD11B1	3290	broad.mit.edu	37	chr1	209878281	209878281	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcttcaggccagctccCtgtcggatggcttttatgaa	12	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209878281	A	A	209878281	1	1	107	1	0	0	0	0	0	0	0	0	7442	696	24	2		2	HSD11B1	1	209878281	Translation_Start_Site	SNP	C	TCGA-44-2657-01A-01D-1105-08	87591	209878281	39372340	103	104702											
KCTD3	51133	broad.mit.edu	37	chr1	215792539	215792539	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctactcaaattactcgatCaatgtgatttgagcacatct	6	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215792539	T	T	215792539	4	4	107	1	0	0	0	0	0	1	0	0	8180	827	29	4	1858	4	KCTD3	1	215792539	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	5914258	215792539	33458082	104	104703											
USH2A	7399	broad.mit.edu	37	chr1	216011423	216011423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccattgcttttcacgcagGcatatattgtgcagacttca	7	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216011423	T	T	216011423	3	4	107	1	0	0	0	0	1	0	0	0	17162	1203	42	3	6431	3	USH2A	1	216011423	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	218884	216011423	33239198	105	104704											
MARK1	4139	broad.mit.edu	37	chr1	220773122	220773122	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaacagttatagagttataTctctaattttttttcagtaa	4	5	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220773122	C	C	220773122	1	2	107	0	1	0	0	0	0	0	0	0	9404	1450	50	5		5	MARK1	1	220773122	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	4761699	220773122	28477499	106	104705											
HHIPL2	79802	broad.mit.edu	37	chr1	222717000	222717000	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatagaacttgcgattgtGgcggaatttggggtgaaaag	14	3	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222717000	T	T	222717000	3	4	107	1	0	0	0	0	1	0	0	0	7161	1348	47	2	1353	2	HHIPL2	1	222717000	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1943878	222717000	26533621	107	104706											
MIA3	375056	broad.mit.edu	37	chr1	222827455	222827455	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcttaaaagtcagtctaatCcttttctgtttttgtttgtt	5	7	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222827455	T	T	222827455	1	4	107	0	1	0	0	0	0	0	0	0	9658	870	30	4		4	MIA3	1	222827455	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	110455	222827455	26423166	108	104707											
OBSCN	84033	broad.mit.edu	37	chr1	228466474	228466474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggagtgtcaggtgtcccGggccagcgcccaggtgcggt	18	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228466474	T	T	228466474	3	4	107	1	0	0	0	0	1	0	0	0	10907	1116	39	1	7042	1	OBSCN	1	228466474	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5639019	228466474	20784147	109	104708											
OBSCN	84033	broad.mit.edu	37	chr1	228491120	228491120	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaccaacgaggcctcagAaggggccacagccacattgc	12	13	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228491120	T	T	228491120	1	4	107	0	1	0	0	0	0	0	0	0	10907	261	9	5		5	OBSCN	1	228491120	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	24646	228491120	20759501	110	104709											
OBSCN	84033	broad.mit.edu	37	chr1	228548137	228548137	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggggcagcctgtgctgcTcagcgtggggcatgcactgg	19	10	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228548137	C	C	228548137	1	2	107	0	1	0	0	0	0	0	0	0	10907	1551	54	5		5	OBSCN	1	228548137	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	57017	228548137	20702484	111	104710											
NID1	4811	broad.mit.edu	37	chr1	236187423	236187423	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagcactcgcaggtgaacTgtgtcctgggaccagggcga	16	10	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236187423	A	A	236187423	3	1	107	1	0	0	0	0	1	0	0	0	10509	1580	55	5	1716	5	NID1	1	236187423	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	7639286	236187423	13063198	112	104711											
RYR2	6262	broad.mit.edu	37	chr1	237550607	237550607	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttatggcaacggcagcttAcacgtggatgccgctttcca	10	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237550607	T	T	237550607	3	4	107	1	0	0	0	0	1	0	0	0	13880	388	14	5	637	5	RYR2	1	237550607	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	1363184	237550607	11700014	113	104712											
RYR2	6262	broad.mit.edu	37	chr1	237659975	237659975	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atattctccctaccctggagGgggcgaagagtggggtggaa	16	8	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237659975	C	C	237659975	3	2	107	1	0	0	0	0	1	0	0	0	13880	1232	43	4	2204	4	RYR2	1	237659975	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	109368	237659975	11590646	114	104713											
RYR2	6262	broad.mit.edu	37	chr1	237660144	237660144	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgcttccattaggtacttCtatagggtattaattattca	7	7	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237660144	A	A	237660144	1	1	107	0	1	0	0	0	0	0	0	0	13880	928	32	3		3	RYR2	1	237660144	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	169	237660144	11590477	115	104714											
RYR2	6262	broad.mit.edu	37	chr1	237794761	237794762	+	Missense_Mutation	DNP	CC	AG	AG													acaaagtgttttaccagcacCctaatctcatgagggcactg							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	237794762	AG	AG	237794761	3	1	107	1	0	0	0	0	1	0	0	0	13880	623	22	2	6641	2	RYR2	1	237794761	Missense_Mutation	DNP	CC	TCGA-44-2657-01A-01D-1105-08	134617	237794761	11455860	116	104715											
KMO	8564	broad.mit.edu	37	chr1	241750153	241750153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataatgtatattatctcccCaggattacatatttttctac	3	8	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241750153	A	A	241750153	1	1	107	0	1	0	0	0	0	0	0	0	8495	609	21	2		2	KMO	1	241750153	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3955392	241750153	7500468	117	104716											
OR2G2	81470	broad.mit.edu	37	chr1	247751927	247751927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctcctggtaaacctgtGggaacccatgaaaactatcg	9	12	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247751927	T	T	247751927	3	4	107	1	0	0	0	0	1	0	0	0	11092	1357	47	2	268	2	OR2G2	1	247751927	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	6001774	247751927	1498694	118	104717											
OR2L13	284521	broad.mit.edu	37	chr1	248128615	248128615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattttactttctcttaaGggaagtcaacattattacat	5	7	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248128615	T	T	248128615	1	4	107	0	1	0	0	0	0	0	0	0	11100	1015	35	2		2	OR2L13	1	248128615	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	376688	248128615	1122006	119	104718											
OR2L13	284521	broad.mit.edu	37	chr1	248167235	248167235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatccctgtaatctccaaCagaggacaaggttctggctg	10	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248167235	A	A	248167235	1	1	107	0	1	0	0	0	0	0	0	0	11100	493	17	3		3	OR2L13	1	248167235	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	38620	248167235	1083386	120	104719											
OR2T2	401992	broad.mit.edu	37	chr1	248616384	248616384	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacaagaccatttccttcCtgggctgtgcagttcagatc	10	11	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248616384	T	T	248616384	2	4	107	1	0	0	0	0	0	0	0	1	11114	680	24	4		4	OR2T2	1	248616384	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	449149	248616384	634237	121	104720											
OR2T34	127068	broad.mit.edu	37	chr1	248737364	248737364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccggcggcagaattcatcCtgtggatgagatgcaggatg	16	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248737364	A	A	248737364	3	1	107	1	0	0	0	0	1	0	0	0	11119	681	24	2	265	2	OR2T34	1	248737364	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	120980	248737364	513257	122	104721											
OR2T11	127077	broad.mit.edu	37	chr1	248790155	248790155	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatctggatgccacaggccAcaaaggaaatgatcttctct	9	10	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248790155	C	C	248790155	3	2	107	1	0	0	0	0	1	0	0	0	11112	159	6	5	679	5	OR2T11	1	248790155	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	52791	248790155	460466	123	104722											
SH3BP5L	80851	broad.mit.edu	37	chr1	249119037	249119037	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacctcctccaggctcttctGcgactgggctcctagggact	10	16	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	249119037	C	C	249119037	3	2	107	1	0	0	0	0	1	0	0	0	14361	1319	46	4	1107	4	SH3BP5L	1	249119037	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	328882	249119037	131584	124	104723											
ALLC	55821	broad.mit.edu	37	chr2	3750170	3750170	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaacacacacaaagccccgGtgtcggacacacagcagtaa	8	13	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3750170	A	A	3750170	1	1	107	0	1	0	0	0	0	0	0	0	534	1276	44	4		4	ALLC	2	3750170	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08		3750170	239449203	125	104724											
SMC6	79677	broad.mit.edu	37	chr2	17961448	17961448	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgttatagaagagccacctCttctgtttgaatctgctgtg	9	8	3	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17961448	T	T	17961448	1	4	107	0	1	0	0	0	0	0	0	0	14901	928	32	4		4	SMC6	2	17961448	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	14211278	17961448	225237925	126	104725											
APOB	338	broad.mit.edu	37	chr2	21255418	21255419	+	Missense_Mutation	DNP	TG	GT	GT													tgtgagtggagcactgaggcTgtccacactgaaccaaggct							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	21255419	GT	GT	21255418	3	3	107	1	0	0	0	0	1	0	0	0	787	1580	55	5	12611	5	APOB	2	21255418	Missense_Mutation	DNP	TG	TCGA-44-2657-01A-01D-1105-08	3293970	21255418	221943955	127	104726											
EPT1	85465	broad.mit.edu	37	chr2	26587740	26587740	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccaatctgataactttttCtggctttctgctggtcgtat	8	10	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26587740	T	T	26587740	3	4	107	1	0	0	0	0	1	0	0	0	5241	913	32	4	177	4	EPT1	2	26587740	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	5332322	26587740	216611633	128	104727											
FAM82A1	151393	broad.mit.edu	37	chr2	38202514	38202514	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagatctatagtaaatcatGcagccgtaaaaaaggatgag	9	5	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38202514	C	C	38202514	1	2	107	0	1	0	0	0	0	0	0	0	5683	1334	46	4		4	FAM82A1	2	38202514	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	11614774	38202514	204996859	129	104728											
SIX3	6496	broad.mit.edu	37	chr2	45169954	45169954	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaccccagcaagaaacgCgaactggcgcaggccaccgg	11	17	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45169954	T	T	45169954	2	4	107	1	0	0	0	0	0	0	0	1	14461	755	27	4		4	SIX3	2	45169954	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	6967440	45169954	198029419	130	104729											
USP34	9736	broad.mit.edu	37	chr2	61697761	61697761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaaaccgtgcaccccgaCaggccgctaccgcggctact	9	20	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61697761	A	A	61697761	1	1	107	0	1	0	0	0	0	0	0	0	17192	493	17	3		3	USP34	2	61697761	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	16527807	61697761	181501612	131	104730											
MDH1	4190	broad.mit.edu	37	chr2	63824683	63824683	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcccagggtgcagccttagAtaaatacgccaagaagtcag	10	10	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63824683	G	G	63824683	3	3	107	1	0	0	0	0	1	0	0	0	9501	333	12	5	364	5	MDH1	2	63824683	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	2126922	63824683	179374690	132	104731											
ETAA1	54465	broad.mit.edu	37	chr2	67630780	67630780	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaatgctttgaaagaggaGaaaatcattactaatgaaac	7	5	1	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67630780	A	A	67630780	2	1	107	1	0	0	0	0	0	0	0	1	5309	933	33	4		4	ETAA1	2	67630780	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3806097	67630780	175568593	133	104732											
BMP10	27302	broad.mit.edu	37	chr2	69093486	69093486	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccccagacaccaagacCagcatgtttctttctccctc	4	17	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69093486	A	A	69093486	2	1	107	1	0	0	0	0	0	0	0	1	1463	581	21	2		2	BMP10	2	69093486	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1462706	69093486	174105887	134	104733											
GKN1	56287	broad.mit.edu	37	chr2	69206066	69206066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacaaaatgaacaaggaaGtcatgccctccattcaatcc	6	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69206066	T	T	69206066	3	4	107	1	0	0	0	0	1	0	0	0	6488	1029	36	3	324	3	GKN1	2	69206066	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	112580	69206066	173993307	135	104734											
ZNF638	27332	broad.mit.edu	37	chr2	71592757	71592757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggacattctattcgttGtaaatcaaagaatcttgaag	9	5	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71592757	T	T	71592757	3	4	107	1	0	0	0	0	1	0	0	0	18182	1377	48	3	1934	3	ZNF638	2	71592757	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2386691	71592757	171606616	136	104735											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73315133	73315133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccaggcagcacacacccCagcatcctccccaaggagca	9	18	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73315133	A	A	73315133	1	1	107	0	1	0	0	0	0	0	0	0	13005	609	21	2		2	RAB11FIP5	2	73315133	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1722376	73315133	169884240	137	104736											
DCTN1	1639	broad.mit.edu	37	chr2	74597015	74597015	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccctcaccgcacaccctgcTcaaaggccaagggtcacatg	8	17	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74597015	A	A	74597015	1	1	107	0	1	0	0	0	0	0	0	0	4339	1566	54	5		5	DCTN1	2	74597015	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	1281882	74597015	168602358	138	104737											
REG1B	5968	broad.mit.edu	37	chr2	79312479	79312479	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctcctcaacctaggactCagaacaaaaaactagaggaa	6	13	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79312479	A	A	79312479	1	1	107	0	1	0	0	0	0	0	0	0	13319	841	29	3		3	REG1B	2	79312479	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	4715464	79312479	163886894	139	104738											
REG1B	5968	broad.mit.edu	37	chr2	79314006	79314006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcgataggcattggtgcCttctgggcagctgattcggg	17	8	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79314006	A	A	79314006	3	1	107	1	0	0	0	0	1	0	0	0	13319	681	24	2	401	2	REG1B	2	79314006	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1527	79314006	163885367	140	104739											
REG3A	5068	broad.mit.edu	37	chr2	79385822	79385822	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaaaaacaaggcatagcaGtgggagccataggccttgga	13	8	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79385822	C	C	79385822	3	2	107	1	0	0	0	0	1	0	0	0	13320	1020	36	4	393	4	REG3A	2	79385822	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	71816	79385822	163813551	141	104740											
TCF7L1	83439	broad.mit.edu	37	chr2	85533621	85533621	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagtactacgagctggCccggaaggagcggcagcttc	15	12	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85533621	T	T	85533621	3	4	107	1	0	0	0	0	1	0	0	0	15819	739	26	4	1234	4	TCF7L1	2	85533621	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	6147799	85533621	157665752	142	104741											
C2orf51	200523	broad.mit.edu	37	chr2	88825280	88825280	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaggctctttctagaagcTcatctttctgtaatgatagt	8	9	5	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88825280	A	A	88825280	1	1	107	0	1	0	0	0	0	0	0	0	2195	1566	54	5		5	C2orf51	2	88825280	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	3291659	88825280	154374093	143	104742											
ARID5A	10865	broad.mit.edu	37	chr2	97215628	97215628	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgcctctggacagaggaaGagccaggatccccagtccta	11	13	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97215628	T	T	97215628	1	4	107	0	1	0	0	0	0	0	0	0	923	957	33	3		3	ARID5A	2	97215628	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	8390348	97215628	145983745	144	104743											
ARID5A	10865	broad.mit.edu	37	chr2	97217674	97217674	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctttcttaaggaggcggAtgccaagaagtgtggggcca	14	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97217674	T	T	97217674	3	4	107	1	0	0	0	0	1	0	0	0	923	333	12	5	1435	5	ARID5A	2	97217674	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	2046	97217674	145981699	145	104744											
LMAN2L	81562	broad.mit.edu	37	chr2	97373407	97373407	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggtacagcactgcaagctCctccccaactatgggaccat	9	14	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97373407	G	G	97373407	1	3	107	0	1	0	0	0	0	0	0	0	8913	870	30	4		4	LMAN2L	2	97373407	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	155733	97373407	145825966	146	104745											
MRPL30	51263	broad.mit.edu	37	chr2	99804581	99804581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttacctaaagattggtgGgtatggatttctctactgac	10	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99804581	T	T	99804581	1	4	107	0	1	0	0	0	0	0	0	0	9888	1247	43	2		2	MRPL30	2	99804581	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2431174	99804581	143394792	147	104746											
SLC9A2	6549	broad.mit.edu	37	chr2	103311549	103311549	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgtttgtggacattgGggtcacaacttttggagaga	14	4	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103311549	C	C	103311549	3	2	107	1	0	0	0	0	1	0	0	0	14826	1241	43	4	1589	4	SLC9A2	2	103311549	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3506968	103311549	139887824	148	104747											
RGPD4	285190	broad.mit.edu	37	chr2	108492764	108492764	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagattctccctcagatagtCtcggtctcctgacctcgtga	8	13	4	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108492764	A	A	108492764	1	1	107	0	1	0	0	0	0	0	0	0	13396	928	32	3		3	RGPD4	2	108492764	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5181215	108492764	134706609	149	104748											
SULT1C4	27233	broad.mit.edu	37	chr2	108998221	108998221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttacgtgcacgtaaggaaCaacatggactcaggagatag	11	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108998221	A	A	108998221	3	1	107	1	0	0	0	0	1	0	0	0	15497	478	17	3	179	3	SULT1C4	2	108998221	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	505457	108998221	134201152	150	104749											
POLR1B	84172	broad.mit.edu	37	chr2	113299993	113299993	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcggaaacgggactgcgGccactacttccggcgtgtac	14	13	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113299993	T	T	113299993	1	4	107	0	1	0	0	0	0	0	0	0	12305	1218	42	3		3	POLR1B	2	113299993	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	4301772	113299993	129899380	151	104750											
IL1F8	27177	broad.mit.edu	37	chr2	113785526	113785526	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtgttattagttatgcctCtctccttggtgagaaagatg	10	6	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113785526	A	A	113785526	1	1	107	0	1	0	0	0	0	0	0	0	7726	913	32	3		3	IL1F8	2	113785526	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	485533	113785526	129413847	152	104751											
ACTR3	10096	broad.mit.edu	37	chr2	114697476	114697476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttattggttcatatttttGggttatattaattttcaaaa	5	3	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114697476	T	T	114697476	1	4	107	0	1	0	0	0	0	0	0	0	212	1363	47	2		2	ACTR3	2	114697476	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	911950	114697476	128501897	153	104752											
CNTNAP5	129684	broad.mit.edu	37	chr2	125660630	125660630	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatccagctgtggcttcaTggtggactcagatgtgaatg	14	7	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125660630	C	C	125660630	3	2	107	1	0	0	0	0	1	0	0	0	3682	1464	51	5	3691	5	CNTNAP5	2	125660630	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	10963154	125660630	117538743	154	104753											
YSK4	80122	broad.mit.edu	37	chr2	135756690	135756690	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccaaatggtgctgctgaAaggaaaggctgaatcctgag	12	8	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135756690	G	G	135756690	1	3	107	0	1	0	0	0	0	0	0	0	17622	29	1	5		5	YSK4	2	135756690	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	10096060	135756690	107442683	155	104754											
ZRANB3	84083	broad.mit.edu	37	chr2	135965470	135965470	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggctaaatagtaattgcttCatataaaggttatcaaagtt	7	4	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135965470	T	T	135965470	1	4	107	0	1	0	0	0	0	0	0	0	18353	841	29	4		4	ZRANB3	2	135965470	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	208780	135965470	107233903	156	104755											
SPOPL	339745	broad.mit.edu	37	chr2	139322436	139322436	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataggtaagctatgcttgtAtttcagtgggcatgacaact	10	6	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139322436	C	C	139322436	1	2	107	0	1	0	0	0	0	0	0	0	15203	464	16	5		5	SPOPL	2	139322436	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	3356966	139322436	103876937	157	104756											
LRP1B	53353	broad.mit.edu	37	chr2	141806458	141806458	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaccaaccagaagaacttGagttctggttaaagctagtc	9	8	1	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141806458	C	C	141806458	1	2	107	0	1	0	0	0	0	0	0	0	9042	1305	45	4		4	LRP1B	2	141806458	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2484022	141806458	101392915	158	104757											
ZEB2	9839	broad.mit.edu	37	chr2	145157678	145157678	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggctgaattagtaggagaaGaagaaacagaattaggggaa	14	2	0	5			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145157678	C	C	145157678	3	2	107	1	0	0	0	0	1	0	0	0	17750	942	33	4	2580	4	ZEB2	2	145157678	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3351220	145157678	98041695	159	104758											
NEB	4703	broad.mit.edu	37	chr2	152387542	152387542	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaccttgcggacatgcAgcaacatgggtgtgtcgtgg	13	9	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152387542	T	T	152387542	3	4	107	1	0	0	0	0	1	0	0	0	10397	188	7	5	4133	5	NEB	2	152387542	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	7229864	152387542	90811831	160	104759											
ERMN	57471	broad.mit.edu	37	chr2	158181913	158181913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaagggaaacactttaCcttttagcattttgtcctcc	8	9	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158181913	A	A	158181913	1	1	107	0	1	0	0	0	0	0	0	0	5277	521	18	3		3	ERMN	2	158181913	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5794371	158181913	85017460	161	104760											
IFIH1	64135	broad.mit.edu	37	chr2	163133444	163133444	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcagccagccttttcaacAttttattgttttctttaaga	4	8	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163133444	G	G	163133444	3	3	107	1	0	0	0	0	1	0	0	0	7590	217	8	5	1044	5	IFIH1	2	163133444	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	4951531	163133444	80065929	162	104761											
KCNH7	90134	broad.mit.edu	37	chr2	163230172	163230172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcatttgggattcaagCctacagaacagacagaagta	11	7	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163230172	A	A	163230172	3	1	107	1	0	0	0	0	1	0	0	0	8107	753	26	3	466	3	KCNH7	2	163230172	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	96728	163230172	79969201	163	104762											
GALNT3	2591	broad.mit.edu	37	chr2	166611281	166611281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaagttttttaatccatGtgatttatatatttttaaaa	4	2	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166611281	T	T	166611281	1	4	107	0	1	0	0	0	0	0	0	0	6276	1392	48	3		3	GALNT3	2	166611281	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	3381109	166611281	76588092	164	104763											
XIRP2	129446	broad.mit.edu	37	chr2	168106328	168106328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagcaaagagaatttagcgGatctgacagagggaaacttc	12	6	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168106328	T	T	168106328	3	4	107	1	0	0	0	0	1	0	0	0	17557	1174	41	3	8456	3	XIRP2	2	168106328	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1495047	168106328	75093045	165	104764											
CHRNA1	1134	broad.mit.edu	37	chr2	175618559	175618559	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtgacaaggccacagattCcagctctgtgggtcacacac	10	13	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175618559	A	A	175618559	1	1	107	0	1	0	0	0	0	0	0	0	3412	870	30	3		3	CHRNA1	2	175618559	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	7512231	175618559	67580814	166	104765											
HOXD10	3236	broad.mit.edu	37	chr2	176981545	176981545	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggacacaatctctcttctTcaaattcttccccaaaatgt	3	12	5	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176981545	A	A	176981545	1	1	107	0	1	0	0	0	0	0	0	0	7386	1798	62	5		5	HOXD10	2	176981545	5'UTR	SNP	T	TCGA-44-2657-01A-01D-1105-08	1362986	176981545	66217828	167	104766											
PRKRA	8575	broad.mit.edu	37	chr2	179314917	179314917	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgaactgaaaagcaacaccAagtattgactgccaacccac	6	14	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179314917	G	G	179314917	1	3	107	0	1	0	0	0	0	0	0	0	12630	145	5	5		5	PRKRA	2	179314917	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2333372	179314917	63884456	168	104767											
ITGA4	3676	broad.mit.edu	37	chr2	182347391	182347391	+	Intron	DEL	G	-	-													ctggctcggtatgtccaagtGccccaactggaagccattta							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182347391	-	-	182347391	6	5	107	0	1	1	0	1	0	0	0	0	7948	1334	46	0		0	ITGA4	2	182347391	Intron	DEL	G	TCGA-44-2657-01A-01D-1105-08	3032474	182347391	60851982	169	104768											
PDE1A	5136	broad.mit.edu	37	chr2	183053786	183053786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaattcagcttctttatctCcctggagaaagaaaagcaca	6	10	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183053786	A	A	183053786	3	1	107	1	0	0	0	0	1	0	0	0	11727	869	30	3	526	3	PDE1A	2	183053786	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	706395	183053786	60145587	170	104769											
DNAJC10	54431	broad.mit.edu	37	chr2	183582814	183582814	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacttgcataagaaagagaAtgggagtctggttaaataaa	11	3	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183582814	G	G	183582814	3	3	107	1	0	0	0	0	1	0	0	0	4669	101	4	5	3	5	DNAJC10	2	183582814	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	529028	183582814	59616559	171	104770											
GULP1	51454	broad.mit.edu	37	chr2	189406035	189406035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgctatgtatttgacaGcgaaaagtgtgtaagtatcc	10	5	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189406035	T	T	189406035	3	4	107	1	0	0	0	0	1	0	0	0	6966	971	34	3	407	3	GULP1	2	189406035	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5823221	189406035	53793338	172	104771											
ICA1L	130026	broad.mit.edu	37	chr2	203682164	203682164	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtagtgagcgaatgagAtagcatattgcagcgactag	14	5	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203682164	C	C	203682164	3	2	107	1	0	0	0	0	1	0	0	0	7548	333	12	5	819	5	ICA1L	2	203682164	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	14276129	203682164	39517209	173	104772											
NDUFS1	4719	broad.mit.edu	37	chr2	207007312	207007312	+	Intron	DEL	T	-	-													gtctatatatgaaaataaacTgggggatatgttggagaatc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	207007312	-	-	207007312	6	5	107	0	1	1	0	1	0	0	0	0	10386	1595	55	0		0	NDUFS1	2	207007312	Intron	DEL	T	TCGA-44-2657-01A-01D-1105-08	3325148	207007312	36192061	174	104773											
DYTN	391475	broad.mit.edu	37	chr2	207527706	207527706	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctccagctcatccttTctctccttgatgttacctgc	4	16	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207527706	C	C	207527706	2	2	107	1	0	0	0	0	0	0	0	1	4901	1780	62	5		5	DYTN	2	207527706	Silent	SNP	T	TCGA-44-2657-01A-01D-1105-08	520394	207527706	35671667	175	104774											
CPO	130749	broad.mit.edu	37	chr2	207804187	207804187	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaataaagcaattgcccgtGactttctgctgagacatcca	7	10	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207804187	T	T	207804187	1	4	107	0	1	0	0	0	0	0	0	0	3852	1305	45	3		3	CPO	2	207804187	5'Flank	SNP	G	TCGA-44-2657-01A-01D-1105-08	276481	207804187	35395186	176	104775											
CRYGC	1420	broad.mit.edu	37	chr2	208994632	208994632	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacacaaaaggggccctcagCggtaaggggattttatgcat	12	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	208994632	G	G	208994632	1	3	107	0	1	0	0	0	0	0	0	0	3948	783	27	4		4	CRYGC	2	208994632	5'Flank	SNP	C	TCGA-44-2657-01A-01D-1105-08	1190445	208994632	34204741	177	104776											
PIKFYVE	200576	broad.mit.edu	37	chr2	209169068	209169068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaactttctaacattttaGttttgatgggtcattgctgt	7	5	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209169068	T	T	209169068	1	4	107	0	1	0	0	0	0	0	0	0	12019	1044	36	3		3	PIKFYVE	2	209169068	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	174436	209169068	34030305	178	104777											
CPS1	1373	broad.mit.edu	37	chr2	211527847	211527847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttttttttttccaacagGctcccatgttttcctggccc	6	12	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211527847	T	T	211527847	3	4	107	1	0	0	0	0	1	0	0	0	3855	1217	42	3	4080	3	CPS1	2	211527847	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2358779	211527847	31671526	179	104778											
MARCH4	57574	broad.mit.edu	37	chr2	217148180	217148180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcttgcccacccagccCatcttcttccttttcctcaa	4	19	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217148180	A	A	217148180	1	1	107	0	1	0	0	0	0	0	0	0	9395	609	21	2		2	MARCH4	2	217148180	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5620333	217148180	26051193	180	104779											
PLCD4	84812	broad.mit.edu	37	chr2	219495489	219495489	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgctgagcaccaccttGgatggggtgctgcccactca	12	14	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219495489	A	A	219495489	2	1	107	1	0	0	0	0	0	0	0	1	12128	1339	47	4		4	PLCD4	2	219495489	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	2347309	219495489	23703884	181	104780											
PLCD4	84812	broad.mit.edu	37	chr2	219498293	219498293	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctctctcagactgctgaGggttcaattccatcttcttt	6	12	5	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219498293	C	C	219498293	1	2	107	0	1	0	0	0	0	0	0	0	12128	1015	35	4		4	PLCD4	2	219498293	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2804	219498293	23701080	182	104781											
STK36	27148	broad.mit.edu	37	chr2	219553476	219553476	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcctgcattccgggtcctGagcagtcttctctccagctg	10	15	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219553476	T	T	219553476	2	4	107	1	0	0	0	0	0	0	0	1	15420	1277	45	3		3	STK36	2	219553476	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	55183	219553476	23645897	183	104782											
CYP27A1	1593	broad.mit.edu	37	chr2	219679287	219679287	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacccagtttgtgttctgccActatgtggtgtcccgggacc	12	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219679287	T	T	219679287	3	4	107	1	0	0	0	0	1	0	0	0	4191	159	6	5	1313	5	CYP27A1	2	219679287	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	125811	219679287	23520086	184	104783											
CCDC108	255101	broad.mit.edu	37	chr2	219896345	219896345	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgacacagaacatcccctcCgctttctcaaaccacagctg	5	18	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219896345	T	T	219896345	2	4	107	1	0	0	0	0	0	0	0	1	2769	639	23	4		4	CCDC108	2	219896345	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	217058	219896345	23303028	185	104784											
DOCK10	55619	broad.mit.edu	37	chr2	225688308	225688308	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatggtcggataggaccatGacaagattgtccaattcatt	9	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225688308	T	T	225688308	2	4	107	1	0	0	0	0	0	0	0	1	4725	1277	45	3		3	DOCK10	2	225688308	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	5791963	225688308	17511065	186	104785											
SLC19A3	80704	broad.mit.edu	37	chr2	228552161	228552161	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttcctctgggtgagaCacatctggattctcacttgg	9	12	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228552161	A	A	228552161	2	1	107	1	0	0	0	0	0	0	0	1	14543	465	17	3		3	SLC19A3	2	228552161	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	2863853	228552161	14647212	187	104786											
SP140	11262	broad.mit.edu	37	chr2	231112827	231112827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaagggtgaaaatgagaGtgccaacatggggtgggaga	17	4	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231112827	T	T	231112827	1	4	107	0	1	0	0	0	0	0	0	0	15076	1044	36	3		3	SP140	2	231112827	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2560666	231112827	12086546	188	104787											
CHRND	1144	broad.mit.edu	37	chr2	233393557	233393557	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgagtgtcactctctgccCattgccctccccagttccct	7	19	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233393557	T	T	233393557	1	4	107	0	1	0	0	0	0	0	0	0	3425	609	21	4		4	CHRND	2	233393557	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2280730	233393557	9805816	189	104788											
CHRNG	1146	broad.mit.edu	37	chr2	233406069	233406069	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcctcgtggcctggcctGttctgtgcatacagcgtgga	13	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233406069	A	A	233406069	1	1	107	0	1	0	0	0	0	0	0	0	3427	1392	48	4		4	CHRNG	2	233406069	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	12512	233406069	9793304	190	104789											
UGT1A10	54575	broad.mit.edu	37	chr2	234545440	234545440	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatcagaaccgggaattcaTggttttcgcccatgctcaat	9	10	3	2	rs141009803	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234545440	A	A	234545440	3	1	107	1	0	0	0	0	1	0	0	0	17071	1464	51	5	274	5	UGT1A10	2	234545440	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	1139371	234545440	8653933	191	104790											
COL6A3	1293	broad.mit.edu	37	chr2	238266452	238266452	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtctaggaatgtgcagCaccttaccatggggccgagg	15	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238266452	A	A	238266452	1	1	107	0	1	0	0	0	0	0	0	0	3733	725	25	3		3	COL6A3	2	238266452	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3721012	238266452	4932921	192	104791											
ESPNL	339768	broad.mit.edu	37	chr2	239013434	239013434	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctctcgatggcatgagcgCcctgcacgctgccgccgccc	12	18	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	239013434	G	G	239013434	3	3	107	1	0	0	0	0	1	0	0	0	5297	739	26	4	633	4	ESPNL	2	239013434	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	746982	239013434	4185939	193	104792											
ANKMY1	51281	broad.mit.edu	37	chr2	241421494	241421494	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgccacttgggggtcagaTggcatggaggctgtcccggg	17	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241421494	A	A	241421494	1	1	107	0	1	0	0	0	0	0	0	0	634	1479	51	5		5	ANKMY1	2	241421494	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	2408060	241421494	1777879	194	104793											
D2HGDH	728294	broad.mit.edu	37	chr2	242707041	242707041	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcggggttgctggggagggGatcttgggaggggctgttgg	23	5	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242707041	T	T	242707041	1	4	107	0	1	0	0	0	0	0	0	0	4246	1189	41	3		3	D2HGDH	2	242707041	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1285547	242707041	492332	195	104794											
CHL1	10752	broad.mit.edu	37	chr3	440019	440019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctaatgactaagaattgGggcgataatgatagcatttt	10	6	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	440019	T	T	440019	3	4	107	1	0	0	0	0	1	0	0	0	3380	1241	43	2	3294	2	CHL1	3	440019	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08		440019	197582411	196	104795											
IL5RA	3568	broad.mit.edu	37	chr3	3111826	3111826	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcctaaattctgaacacctCttagccaagagccagcatcc	6	14	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3111826	G	G	3111826	1	3	107	0	1	0	0	0	0	0	0	0	7770	928	32	4		4	IL5RA	3	3111826	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	2671807	3111826	194910604	197	104796											
LMCD1	29995	broad.mit.edu	37	chr3	8606962	8606962	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaggtaggcaatattattGtgtcgctttgcagatgacaa	11	5	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8606962	A	A	8606962	1	1	107	0	1	0	0	0	0	0	0	0	8918	1392	48	4		4	LMCD1	3	8606962	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5495136	8606962	189415468	198	104797											
SEC13	6396	broad.mit.edu	37	chr3	10354220	10354220	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggacagagtccttttttaCccagtggtccccttgcccgc	10	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10354220	T	T	10354220	1	4	107	0	1	0	0	0	0	0	0	0	14093	522	18	4		4	SEC13	3	10354220	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1747258	10354220	187668210	199	104798											
STAC	6769	broad.mit.edu	37	chr3	36587622	36587622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagggattcaagctgcagGttctaacttcgttcttgctg	11	9	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36587622	T	T	36587622	1	4	107	0	1	0	0	0	0	0	0	0	15357	1276	44	3		3	STAC	3	36587622	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	26233402	36587622	161434808	200	104799											
DCLK3	85443	broad.mit.edu	37	chr3	36779841	36779841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggggggcttgctactggGttctggctcccatttccccc	12	15	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36779841	T	T	36779841	3	4	107	1	0	0	0	0	1	0	0	0	4326	1261	44	3	1652	3	DCLK3	3	36779841	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	192219	36779841	161242589	201	104800											
SCN10A	6336	broad.mit.edu	37	chr3	38764936	38764936	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcaccttctgtgaagcagtCatctggttcttccaggtcat	8	11	6	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38764936	A	A	38764936	3	1	107	1	0	0	0	0	1	0	0	0	14025	826	29	3	2573	3	SCN10A	3	38764936	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1985095	38764936	159257494	202	104801											
CCBP2	1238	broad.mit.edu	37	chr3	42931455	42931455	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtggttctggaaactttGgtggtggtcgtggaggtggt	19	3	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42931455	A	A	42931455	1	1	107	0	1	0	0	0	0	0	0	0	2760	1363	47	4		4	CCBP2	3	42931455	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	4166519	42931455	155090975	203	104802											
ZNF445	353274	broad.mit.edu	37	chr3	44489616	44489616	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggctttcccacacaccCtacatttaaatgctttctct	5	13	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44489616	G	G	44489616	3	3	107	1	0	0	0	0	1	0	0	0	18045	681	24	4	1552	4	ZNF445	3	44489616	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1558161	44489616	153532814	204	104803											
ZNF167	55888	broad.mit.edu	37	chr3	44611702	44611702	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggggaacatccacctctgtCttccagtcctgttgaacatg	9	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44611702	G	G	44611702	3	3	107	1	0	0	0	0	1	0	0	0	17867	913	32	4	1118	4	ZNF167	3	44611702	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	122086	44611702	153410728	205	104804											
ZNF502	91392	broad.mit.edu	37	chr3	44761745	44761745	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaatcaaagcgaagagacGatctgtggatgttgaatatg	11	6	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44761745	T	T	44761745	1	4	107	0	1	0	0	0	0	0	0	0	18077	1073	37	3		3	ZNF502	3	44761745	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	150043	44761745	153260685	206	104805											
TGM4	7047	broad.mit.edu	37	chr3	44943081	44943081	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggactacgaaggtggcacAgccccatacaagtggacagg	15	10	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44943081	C	C	44943081	2	2	107	1	0	0	0	0	0	0	0	1	15955	175	7	5		5	TGM4	3	44943081	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	181336	44943081	153079349	207	104806											
TGM4	7047	broad.mit.edu	37	chr3	44948424	44948424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccactgagagtgaccacCcctggcttcccctcaggtgt	9	17	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44948424	A	A	44948424	1	1	107	0	1	0	0	0	0	0	0	0	15955	638	22	2		2	TGM4	3	44948424	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5343	44948424	153074006	208	104807											
FYCO1	79443	broad.mit.edu	37	chr3	46006595	46006595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaagctggcccctgaggCtcttgcactcttcaccagca	8	17	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46006595	A	A	46006595	3	1	107	1	0	0	0	0	1	0	0	0	6185	797	28	3	1396	3	FYCO1	3	46006595	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1058171	46006595	152015835	209	104808											
FYCO1	79443	broad.mit.edu	37	chr3	46023127	46023127	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgtcatccgtgatgggttCccctgcttcctgaaattctt	9	12	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46023127	A	A	46023127	4	1	107	1	0	0	0	0	0	1	0	0	6185	864	30	3	4403	3	FYCO1	3	46023127	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	16532	46023127	151999303	210	104809											
LTF	4057	broad.mit.edu	37	chr3	46485038	46485038	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagagattagatctcgggtCagacccaggggcacagcttt	12	10	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46485038	A	A	46485038	3	1	107	1	0	0	0	0	1	0	0	0	9166	826	29	3	603	3	LTF	3	46485038	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	461911	46485038	151537392	211	104810											
COL7A1	1294	broad.mit.edu	37	chr3	48619815	48619815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaggataggagcagGgacaggtcagggagtcacct	18	6	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48619815	A	A	48619815	1	1	107	0	1	0	0	0	0	0	0	0	3736	1247	43	4		4	COL7A1	3	48619815	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2134777	48619815	149402615	212	104811											
C3orf71	646450	broad.mit.edu	37	chr3	48955706	48955706	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagcctccgtctctagcCacatcatttgacaaccggtc	8	14	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48955706	A	A	48955706	1	1	107	0	1	0	0	0	0	0	0	0	2265	609	21	2		2	C3orf71	3	48955706	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	335891	48955706	149066724	213	104812											
RFT1	91869	broad.mit.edu	37	chr3	53160012	53160012	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatcaaccgaaacaacaccTatagaaaaagaggaaaaata	6	7	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53160012	A	A	53160012	5	1	107	1	0	0	0	0	0	0	1	0	13365	1536	53	5	1611	5	RFT1	3	53160012	Splice_Site	SNP	T	TCGA-44-2657-01A-01D-1105-08	4204306	53160012	144862418	214	104813											
SLMAP	7871	broad.mit.edu	37	chr3	57835617	57835617	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttcttaaaagcagaattAgggccaggcatggtggctaa	12	6	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57835617	T	T	57835617	1	4	107	0	1	0	0	0	0	0	0	0	14863	435	15	5		5	SLMAP	3	57835617	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	4675605	57835617	140186813	215	104814											
PDZRN3	23024	broad.mit.edu	37	chr3	73440390	73440390	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcattcaactgtgtaGggccggttaacttactaaac	8	9	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73440390	A	A	73440390	1	1	107	0	1	0	0	0	0	0	0	0	11803	1015	35	4		4	PDZRN3	3	73440390	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	15604773	73440390	124582040	216	104815											
ROBO2	6092	broad.mit.edu	37	chr3	77090122	77090122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgttagtccgttttggcCcggcacgggctccttggggg	16	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77090122	A	A	77090122	1	1	107	0	1	0	0	0	0	0	0	0	13625	638	22	2		2	ROBO2	3	77090122	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3649732	77090122	120932308	217	104816											
VGLL3	389136	broad.mit.edu	37	chr3	86996060	86996060	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaactgcgtgacactttgTcttctccttctatgcctttc	6	13	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86996060	G	G	86996060	1	3	107	0	1	0	0	0	0	0	0	0	17287	1682	58	5		5	VGLL3	3	86996060	3'UTR	SNP	T	TCGA-44-2657-01A-01D-1105-08	9905938	86996060	111026370	218	104817											
EPHA3	2042	broad.mit.edu	37	chr3	89445045	89445045	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccagaaatagcatctctttGtcctggcaagaacctgaaca	7	11	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89445045	C	C	89445045	3	2	107	1	0	0	0	0	1	0	0	0	5210	1368	48	4	1387	4	EPHA3	3	89445045	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2448985	89445045	108577385	219	104818											
FAM55C	91775	broad.mit.edu	37	chr3	101540843	101540843	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatattcaatgaccttctCaattgacctgagttacagaa	5	9	3	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101540843	T	T	101540843	1	4	107	0	1	0	0	0	0	0	0	0	5637	841	29	4		4	FAM55C	3	101540843	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	12095798	101540843	96481587	220	104819											
CBLB	868	broad.mit.edu	37	chr3	105439130	105439130	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgcatggattggttttgttCaaaataaacagtaccgagaa	9	5	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105439130	T	T	105439130	1	4	107	0	1	0	0	0	0	0	0	0	2727	841	29	4		4	CBLB	3	105439130	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3898287	105439130	92583300	221	104820											
CCDC54	84692	broad.mit.edu	37	chr3	107096514	107096514	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctccaaggtcagacagtCtcttaaaaatgtttaccaca	5	11	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107096514	A	A	107096514	3	1	107	1	0	0	0	0	1	0	0	0	2852	913	32	3	82	3	CCDC54	3	107096514	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1657384	107096514	90925916	222	104821											
CD96	10225	broad.mit.edu	37	chr3	111343207	111343207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagtatgactacccgagGcttcaactatccctggacct	7	14	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111343207	T	T	111343207	3	4	107	1	0	0	0	0	1	0	0	0	3078	1203	42	3	1367	3	CD96	3	111343207	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4246693	111343207	86679223	223	104822											
DRD3	1814	broad.mit.edu	37	chr3	113858370	113858370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggggaagccaggcctgaCactgttgcactgactgttct	13	11	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113858370	A	A	113858370	3	1	107	1	0	0	0	0	1	0	0	0	4798	478	17	3	514	3	DRD3	3	113858370	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2515163	113858370	84164060	224	104823											
FSTL1	11167	broad.mit.edu	37	chr3	120122105	120122105	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atactcttctcaggagggttGaaagatgggttgaggcactt	13	6	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120122105	T	T	120122105	3	4	107	1	0	0	0	0	1	0	0	0	6137	1281	45	3	264	3	FSTL1	3	120122105	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	6263735	120122105	77900325	225	104824											
STXBP5L	9515	broad.mit.edu	37	chr3	121100491	121100491	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggttataagtattctgcAcaatgggaactattaagaat	8	4	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121100491	G	G	121100491	1	3	107	0	1	0	0	0	0	0	0	0	15475	174	6	5		5	STXBP5L	3	121100491	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	978386	121100491	76921939	226	104825											
HCLS1	3059	broad.mit.edu	37	chr3	121376064	121376065	+	Intron	DNP	CG	GA	GA													ctcaccttcccccaagtctcCgagttttctttgggctcttc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	121376065	GA	GA	121376064	1	3	107	0	1	0	0	0	0	0	0	0	7061	667	23	4		4	HCLS1	3	121376064	Intron	DNP	CG	TCGA-44-2657-01A-01D-1105-08	275573	121376064	76646366	227	104826											
HSPBAP1	79663	broad.mit.edu	37	chr3	122459659	122459659	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcagatgttctgcagcgatCaaaaaatgcagaaacagctg	9	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122459659	A	A	122459659	3	1	107	1	0	0	0	0	1	0	0	0	7495	826	29	3	470	3	HSPBAP1	3	122459659	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1083595	122459659	75562771	228	104827											
ADCY5	111	broad.mit.edu	37	chr3	123071497	123071497	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccccaaagcatgaagccctCagcccctgtctcagcaaact	7	17	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123071497	T	T	123071497	1	4	107	0	1	0	0	0	0	0	0	0	297	841	29	4		4	ADCY5	3	123071497	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	611838	123071497	74950933	229	104828											
MYLK	4638	broad.mit.edu	37	chr3	123419703	123419703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgcgcctcttcagcaccCctcgcacgtcctcgccgtct	7	22	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123419703	A	A	123419703	3	1	107	1	0	0	0	0	1	0	0	0	10150	623	22	2	3200	2	MYLK	3	123419703	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	348206	123419703	74602727	230	104829											
KALRN	8997	broad.mit.edu	37	chr3	124175393	124175393	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccccttttaccacctccctCaactccagtgagttgctttc	4	18	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124175393	A	A	124175393	1	1	107	0	1	0	0	0	0	0	0	0	8045	841	29	3		3	KALRN	3	124175393	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	755690	124175393	73847037	231	104830											
MCM2	4171	broad.mit.edu	37	chr3	127327870	127327870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagatcggagagaaggtaGgtggaaggcaggggcagggg	22	4	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127327870	T	T	127327870	1	4	107	0	1	0	0	0	0	0	0	0	9479	1015	35	2		2	MCM2	3	127327870	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	3152477	127327870	70694560	232	104831											
PLXND1	23129	broad.mit.edu	37	chr3	129277471	129277471	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggtggggtaggaagcagtCgagggacagttgtggaggag	22	3	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129277471	A	A	129277471	1	1	107	0	1	0	0	0	0	0	0	0	12222	899	31	3		3	PLXND1	3	129277471	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1949601	129277471	68744959	233	104832											
COL6A6	131873	broad.mit.edu	37	chr3	130284512	130284512	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctttttttcttctctttCaaatattctgtatacaaagt	2	7	5	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130284512	A	A	130284512	1	1	107	0	1	0	0	0	0	0	0	0	3735	841	29	3		3	COL6A6	3	130284512	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1007041	130284512	67737918	234	104833											
PIK3R4	30849	broad.mit.edu	37	chr3	130463491	130463491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatatagcaagttctcctcCgtgatgtgtcaaagaaataa	7	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130463491	A	A	130463491	3	1	107	1	0	0	0	0	1	0	0	0	12016	652	23	1	3580	1	PIK3R4	3	130463491	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	178979	130463491	67558939	235	104834											
DNAJC13	23317	broad.mit.edu	37	chr3	132218566	132218566	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagagttaatagctgacttCttcctctgcaggtgttacaa	10	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132218566	G	G	132218566	1	3	107	0	1	0	0	0	0	0	0	0	4672	928	32	4		4	DNAJC13	3	132218566	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1755075	132218566	65803864	236	104835											
SLCO2A1	6578	broad.mit.edu	37	chr3	133667690	133667690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccctggccactatccCctcccccgcactgtgccagc	8	22	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133667690	A	A	133667690	1	1	107	0	1	0	0	0	0	0	0	0	14840	638	22	2		2	SLCO2A1	3	133667690	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1449124	133667690	64354740	237	104836											
STAG1	10274	broad.mit.edu	37	chr3	136139833	136139833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcgccaggctggtctcCaattcatggcctcaagcaat	10	12	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136139833	A	A	136139833	1	1	107	0	1	0	0	0	0	0	0	0	15360	609	21	2		2	STAG1	3	136139833	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2472143	136139833	61882597	238	104837											
A4GNT	51146	broad.mit.edu	37	chr3	137843529	137843529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcccacaaaaaggggtgGtgggggaggaacccaaatat	13	8	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137843529	T	T	137843529	3	4	107	1	0	0	0	0	1	0	0	0	7	1252	44	3	426	3	A4GNT	3	137843529	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1703696	137843529	60178901	239	104838											
PRR23B	389151	broad.mit.edu	37	chr3	138738865	138738865	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaattccaggtcaaagatGgggcgtggagaacgtctctc	14	9	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138738865	T	T	138738865	2	4	107	1	0	0	0	0	0	0	0	1	12701	1335	47	2		2	PRR23B	3	138738865	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	895336	138738865	59283565	240	104839											
TFDP2	7029	broad.mit.edu	37	chr3	141671484	141671484	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtgactgtttggggccagGaactgcccagttgctaaggc	15	9	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141671484	A	A	141671484	2	1	107	1	0	0	0	0	0	0	0	1	15921	1165	41	4		4	TFDP2	3	141671484	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	2932619	141671484	56350946	241	104840											
GK5	256356	broad.mit.edu	37	chr3	141896154	141896154	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggatgctctgcttcctcaTggaattcatgcttggtcaga	10	10	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141896154	A	A	141896154	1	1	107	0	1	0	0	0	0	0	0	0	6486	1479	51	5		5	GK5	3	141896154	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	224670	141896154	56126276	242	104841											
XRN1	54464	broad.mit.edu	37	chr3	142054271	142054271	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaattggtaactagaaattTgattttaaggaagcttacct	7	4	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142054271	A	A	142054271	1	1	107	0	1	0	0	0	0	0	0	0	17586	1827	63	5		5	XRN1	3	142054271	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	158117	142054271	55968159	243	104842											
CPA3	1359	broad.mit.edu	37	chr3	148586769	148586769	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggtggatttccgagttaGtgagaaggaatcccaagcca	13	7	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148586769	A	A	148586769	3	1	107	1	0	0	0	0	1	0	0	0	3823	1029	36	4	222	4	CPA3	3	148586769	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	6532498	148586769	49435661	244	104843											
CLRN1	7401	broad.mit.edu	37	chr3	150645698	150645698	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcaagtctactcccttGtaaaattatagaaaggtttg	7	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150645698	T	T	150645698	1	4	107	0	1	0	0	0	0	0	0	0	3589	1392	48	3		3	CLRN1	3	150645698	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	2058929	150645698	47376732	245	104844											
SI	6476	broad.mit.edu	37	chr3	164710138	164710138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccataaatgctggacccCataagaactgcttgaatata	6	9	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164710138	A	A	164710138	3	1	107	1	0	0	0	0	1	0	0	0	14410	595	21	2	622	2	SI	3	164710138	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	14064440	164710138	33312292	246	104845											
ZBBX	79740	broad.mit.edu	37	chr3	167051729	167051729	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggattaacatcctttataaaCtgatgggcaacatccaatac	6	9	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167051729	G	G	167051729	3	3	107	1	0	0	0	0	1	0	0	0	17643	564	20	4	1877	4	ZBBX	3	167051729	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2341591	167051729	30970701	247	104846											
SAMD7	344658	broad.mit.edu	37	chr3	169646139	169646139	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcctaatatcttgtaaggCgtttgcaaatcaagaccact	6	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169646139	T	T	169646139	1	4	107	0	1	0	0	0	0	0	0	0	13935	783	27	4		4	SAMD7	3	169646139	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2594410	169646139	28376291	248	104847											
SLC7A14	57709	broad.mit.edu	37	chr3	170198019	170198019	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagctaggaggtaattttggGataagcatgcttaagacctt	11	6	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170198019	T	T	170198019	1	4	107	0	1	0	0	0	0	0	0	0	14810	1189	41	3		3	SLC7A14	3	170198019	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	551880	170198019	27824411	249	104848											
SLC7A14	57709	broad.mit.edu	37	chr3	170219103	170219103	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagatcctgtggtcttgggGactcgaactccaaactctgc	11	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170219103	A	A	170219103	2	1	107	1	0	0	0	0	0	0	0	1	14810	1161	41	4		4	SLC7A14	3	170219103	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	21084	170219103	27803327	250	104849											
GHSR	2693	broad.mit.edu	37	chr3	172163255	172163255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggcaaacaccactacaGctaaaaggacaatgggagag	11	8	0	2	rs147508651		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172163255	T	T	172163255	3	4	107	1	0	0	0	0	1	0	0	0	6439	985	34	3	307	3	GHSR	3	172163255	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1944152	172163255	25859175	251	104850											
KCNMB3	27094	broad.mit.edu	37	chr3	178977920	178977920	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaaaggacatgaggccacTgtgtctgcctgctctccaac	9	14	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178977920	C	C	178977920	1	2	107	0	1	0	0	0	0	0	0	0	8146	1595	55	5		5	KCNMB3	3	178977920	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	6814665	178977920	19044510	252	104851											
FXR1	8087	broad.mit.edu	37	chr3	180685989	180685989	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaagaggcagaagtgtttCagggggtcgaggtcgtggtg	20	4	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180685989	T	T	180685989	3	4	107	1	0	0	0	0	1	0	0	0	6175	838	29	4	1403	4	FXR1	3	180685989	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1708069	180685989	17336441	253	104852											
HTR3C	170572	broad.mit.edu	37	chr3	183773977	183773977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgatgcaggtatgggacaatCctttcattaattggaaccca	9	8	1	1	rs149370364		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183773977	A	A	183773977	3	1	107	1	0	0	0	0	1	0	0	0	7516	855	30	3	306	3	HTR3C	3	183773977	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3087988	183773977	14248453	254	104853											
KNG1	3827	broad.mit.edu	37	chr3	186450506	186450506	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtaacactatagtctatGtgcaaattgctgactaattt	7	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186450506	A	A	186450506	1	1	107	0	1	0	0	0	0	0	0	0	8498	1392	48	4		4	KNG1	3	186450506	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2676529	186450506	11571924	255	104854											
SST	6750	broad.mit.edu	37	chr3	187387015	187387015	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttccagggcatcattctcCgtctggttgggttcagacag	13	10	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187387015	T	T	187387015	2	4	107	1	0	0	0	0	0	0	0	1	15314	639	23	4		4	SST	3	187387015	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	936509	187387015	10635415	256	104855											
PYDC2	152138	broad.mit.edu	37	chr3	191178923	191178923	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccagagcatagggccagGcgttgggagagctcccacat	14	11	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191178923	T	T	191178923	1	4	107	0	1	0	0	0	0	0	0	0	12967	1218	42	3		3	PYDC2	3	191178923	5'Flank	SNP	G	TCGA-44-2657-01A-01D-1105-08	3791908	191178923	6843507	257	104856											
LRRC33	375387	broad.mit.edu	37	chr3	196388131	196388131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtttgggaatctcagGgacttagatctgtcggggaa	15	6	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196388131	T	T	196388131	3	4	107	1	0	0	0	0	1	0	0	0	9075	1223	43	2	1623	2	LRRC33	3	196388131	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5209208	196388131	1634299	258	104857											
MFSD7	84179	broad.mit.edu	37	chr4	679846	679846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggaccctgaggtgagcCcaggcaggcggcctccctcc	15	15	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	679846	A	A	679846	1	1	107	0	1	0	0	0	0	0	0	0	9630	638	22	2		2	MFSD7	4	679846	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08		679846	190474430	259	104858											
KIAA1530	57654	broad.mit.edu	37	chr4	1379598	1379598	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttggtgatgccgccactgGgagcccaggcccctggcgga	15	14	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1379598	C	C	1379598	1	2	107	0	1	0	0	0	0	0	0	0	8311	1247	43	4		4	KIAA1530	4	1379598	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	699752	1379598	189774678	260	104859											
C4orf50	389197	broad.mit.edu	37	chr4	5969071	5969071	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctcccctctggcccacctCtcacagcgtcctgccggcct	7	21	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5969071	A	A	5969071	1	1	107	0	1	0	0	0	0	0	0	0	2299	928	32	3		3	C4orf50	4	5969071	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	4589473	5969071	185185205	261	104860											
C4orf50	389197	broad.mit.edu	37	chr4	5977785	5977785	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagctggcagttgcctgccCtctttaccctcatggggact	10	14	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5977785	T	T	5977785	1	4	107	0	1	0	0	0	0	0	0	0	2299	696	24	4		4	C4orf50	4	5977785	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	8714	5977785	185176491	262	104861											
JAKMIP1	152789	broad.mit.edu	37	chr4	6062335	6062335	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaatgcctagggtccttaTaggcaaaccttaggaacagg	11	9	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6062335	A	A	6062335	1	1	107	0	1	0	0	0	0	0	0	0	8010	1421	49	5		5	JAKMIP1	4	6062335	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	84550	6062335	185091941	263	104862											
PPP2R2C	5522	broad.mit.edu	37	chr4	6374148	6374148	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagaagttaaacaatgcAgccatccccaaaccagctgt	7	12	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6374148	T	T	6374148	1	4	107	0	1	0	0	0	0	0	0	0	12487	203	7	5		5	PPP2R2C	4	6374148	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	311813	6374148	184780128	264	104863											
CLNK	116449	broad.mit.edu	37	chr4	10492234	10492234	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtcttctactgaatcaaActtctgaaacacagaaaaga	6	8	4	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10492234	G	G	10492234	3	3	107	1	0	0	0	0	1	0	0	0	3579	43	2	5	146	5	CLNK	4	10492234	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	4118086	10492234	180662042	265	104864											
ANAPC4	29945	broad.mit.edu	37	chr4	25379027	25379027	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgccggcctctgactggGgtgtcgttgcagggccgtcc	15	14	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25379027	A	A	25379027	1	1	107	0	1	0	0	0	0	0	0	0	604	1247	43	4		4	ANAPC4	4	25379027	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	14886793	25379027	165775249	266	104865											
KLHL5	51088	broad.mit.edu	37	chr4	39116892	39116892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgttggggggtatgatgGacaggcataccttaatactg	14	6	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39116892	T	T	39116892	3	4	107	1	0	0	0	0	1	0	0	0	8463	1174	41	3	2191	3	KLHL5	4	39116892	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	13737865	39116892	152037384	267	104866											
SCFD2	152579	broad.mit.edu	37	chr4	54232058	54232058	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtttcactttggccagCacctgctcccatccttgctg	8	17	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54232058	A	A	54232058	2	1	107	1	0	0	0	0	0	0	0	1	14002	697	25	3		3	SCFD2	4	54232058	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	15115166	54232058	136922218	268	104867											
KDR	3791	broad.mit.edu	37	chr4	55964820	55964820	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcagttttcattaatcAtgaaaaccaatgtgcatggg	8	8	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55964820	T	T	55964820	1	4	107	0	1	0	0	0	0	0	0	0	8209	232	8	5		5	KDR	4	55964820	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1732762	55964820	135189456	269	104868											
LPHN3	23284	broad.mit.edu	37	chr4	62758472	62758472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagtaccaccccgtcaGtgtcaggaagaagaaaccgg	13	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62758472	T	T	62758472	3	4	107	1	0	0	0	0	1	0	0	0	9004	1029	36	3	1401	3	LPHN3	4	62758472	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	6793652	62758472	128395804	270	104869											
UGT2B4	7363	broad.mit.edu	37	chr4	70361645	70361645	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttctcatggtgacatcCagtataaatcagtcaagaag	7	8	4	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70361645	A	A	70361645	1	1	107	0	1	0	0	0	0	0	0	0	17087	609	21	2		2	UGT2B4	4	70361645	5'Flank	SNP	C	TCGA-44-2657-01A-01D-1105-08	7603173	70361645	120792631	271	104870											
CSN2	1447	broad.mit.edu	37	chr4	70823420	70823420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcaggctgagcaagagGcagaatgttttgtggaagaa	14	6	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70823420	T	T	70823420	3	4	107	1	0	0	0	0	1	0	0	0	3982	1203	42	3	441	3	CSN2	4	70823420	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	461775	70823420	120330856	272	104871											
SHROOM3	57619	broad.mit.edu	37	chr4	77680773	77680773	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctgctcccaaggctgaGctactgaacaaaatcaaaga	9	10	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77680773	A	A	77680773	2	1	107	1	0	0	0	0	0	0	0	1	14408	962	34	4		4	SHROOM3	4	77680773	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	6857353	77680773	113473503	273	104872											
FRAS1	80144	broad.mit.edu	37	chr4	79207579	79207579	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgccagccccagtgctccAcgtgtaccagtgggctggag	13	15	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79207579	T	T	79207579	3	4	107	1	0	0	0	0	1	0	0	0	6102	159	6	5	1474	5	FRAS1	4	79207579	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	1526806	79207579	111946697	274	104873											
AGPAT9	84803	broad.mit.edu	37	chr4	84515881	84515881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcagactaagaacttcaGtcagtagaaggccaatcata	8	8	4	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84515881	T	T	84515881	1	4	107	0	1	0	0	0	0	0	0	0	392	1044	36	3		3	AGPAT9	4	84515881	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5308302	84515881	106638395	275	104874											
C4orf36	132989	broad.mit.edu	37	chr4	87808958	87808958	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaccggctggcctttccctCaggagaagctgaatttcctt	9	12	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87808958	G	G	87808958	2	3	107	1	0	0	0	0	0	0	0	1	2289	813	29	4		4	C4orf36	4	87808958	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	3293077	87808958	103345318	276	104875											
ADH6	130	broad.mit.edu	37	chr4	100129927	100129927	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctttaagtcctgagggttGaggcactcagtagcacccaa	10	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100129927	C	C	100129927	2	2	107	1	0	0	0	0	0	0	0	1	312	1277	45	4		4	ADH6	4	100129927	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	12320969	100129927	91024349	277	104876											
ADH1B	125	broad.mit.edu	37	chr4	100239987	100239987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgcaacctccacatcCtcaatggaaaagggtttctt	10	10	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100239987	A	A	100239987	3	1	107	1	0	0	0	0	1	0	0	0	308	680	24	2	1084	2	ADH1B	4	100239987	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	110060	100239987	90914289	278	104877											
COL25A1	84570	broad.mit.edu	37	chr4	109841671	109841671	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagctaatttcattcacctcTcctgcttgccattaggtcat	5	12	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109841671	A	A	109841671	1	1	107	0	1	0	0	0	0	0	0	0	3716	1566	54	5		5	COL25A1	4	109841671	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	9601684	109841671	81312605	279	104878											
COL25A1	84570	broad.mit.edu	37	chr4	109895672	109895672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcactaactttatttctGgtatgcattttcttacctta	3	9	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109895672	T	T	109895672	1	4	107	0	1	0	0	0	0	0	0	0	3716	1363	47	2		2	COL25A1	4	109895672	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	54001	109895672	81258604	280	104879											
C4orf32	132720	broad.mit.edu	37	chr4	113092700	113092700	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctaagtgtcatcttttgTtttattatgaagactataaa	6	4	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113092700	A	A	113092700	1	1	107	0	1	0	0	0	0	0	0	0	2285	1740	60	5		5	C4orf32	4	113092700	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	3197028	113092700	78061576	281	104880											
ALPK1	80216	broad.mit.edu	37	chr4	113277791	113277791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccgcaagaagatggcaaGtcgctctgtcatttctacaa	10	10	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113277791	T	T	113277791	1	4	107	0	1	0	0	0	0	0	0	0	544	1044	36	3		3	ALPK1	4	113277791	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	185091	113277791	77876485	282	104881											
C4orf21	55345	broad.mit.edu	37	chr4	113506721	113506721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggaccttcctttttaacCatgacaagttttgcaggttg	8	8	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113506721	A	A	113506721	3	1	107	1	0	0	0	0	1	0	0	0	2277	594	21	2	2297	2	C4orf21	4	113506721	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	228930	113506721	77647555	283	104882											
ANK2	287	broad.mit.edu	37	chr4	114153431	114153431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggtaagactgtcagccCtaaagccttgaattctttga	9	9	2	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114153431	A	A	114153431	1	1	107	0	1	0	0	0	0	0	0	0	621	696	24	2		2	ANK2	4	114153431	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	646710	114153431	77000845	284	104883											
NDST4	64579	broad.mit.edu	37	chr4	115997479	115997479	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagggatttttctgtctgTaactcagttaaaagtacagg	10	6	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115997479	C	C	115997479	2	2	107	1	0	0	0	0	0	0	0	1	10353	1635	57	5		5	NDST4	4	115997479	Silent	SNP	T	TCGA-44-2657-01A-01D-1105-08	1844048	115997479	75156797	285	104884											
USP53	54532	broad.mit.edu	37	chr4	120169847	120169847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgttgtaatgaaattActgaaatgtcgttaaagctg	9	5	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120169847	T	T	120169847	1	4	107	0	1	0	0	0	0	0	0	0	17211	406	14	5		5	USP53	4	120169847	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	4172368	120169847	70984429	286	104885											
FAT4	79633	broad.mit.edu	37	chr4	126372425	126372425	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagatcagtgaaggggtcccAataggaactcatgtgacctt	11	9	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126372425	T	T	126372425	2	4	107	1	0	0	0	0	0	0	0	1	5749	117	5	5		5	FAT4	4	126372425	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	6202578	126372425	64781851	287	104886											
LARP1B	55132	broad.mit.edu	37	chr4	128996092	128996092	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttgttacttcttaggctAgtgatttcagtgatatggag	10	4	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128996092	G	G	128996092	1	3	107	0	1	0	0	0	0	0	0	0	8701	435	15	5		5	LARP1B	4	128996092	5'UTR	SNP	A	TCGA-44-2657-01A-01D-1105-08	2623667	128996092	62158184	288	104887											
PCDH10	57575	broad.mit.edu	37	chr4	134071779	134071779	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttgcgcgactacgagatcAcccccaacagctacttctcc	6	18	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134071779	T	T	134071779	3	4	107	1	0	0	0	0	1	0	0	0	11601	159	6	5	486	5	PCDH10	4	134071779	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	5075687	134071779	57082497	289	104888											
C4orf51	646603	broad.mit.edu	37	chr4	146601435	146601435	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaagagtttgatctgatcaGacgcaaggctggagcatctt	11	8	4	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146601435	C	C	146601435	3	2	107	1	0	0	0	0	1	0	0	0	2300	942	33	4	82	4	C4orf51	4	146601435	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	12529656	146601435	44552841	290	104889											
LRBA	987	broad.mit.edu	37	chr4	151271097	151271097	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctctagctccttctagtTtaaatatacctgactataag	5	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151271097	A	A	151271097	1	1	107	0	1	0	0	0	0	0	0	0	9018	1856	64	5		5	LRBA	4	151271097	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	4669662	151271097	39883179	291	104890											
LRBA	987	broad.mit.edu	37	chr4	151792559	151792559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagcatgagcctttcagCtagcaatgaaaacaatccat	7	10	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151792559	A	A	151792559	3	1	107	1	0	0	0	0	1	0	0	0	9018	797	28	3	6446	3	LRBA	4	151792559	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	521462	151792559	39361717	292	104891											
FGG	2266	broad.mit.edu	37	chr4	155533848	155533848	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctttatgtaagctcctgGgatagccaggactgcaaatg	10	10	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155533848	T	T	155533848	1	4	107	0	1	0	0	0	0	0	0	0	5927	1247	43	2		2	FGG	4	155533848	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	3741289	155533848	35620428	293	104892											
KLHL2	11275	broad.mit.edu	37	chr4	166231704	166231704	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgctgtactccttttgcaGgcatggtctacatggctgga	11	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166231704	T	T	166231704	5	4	107	1	0	0	0	0	0	0	1	0	8445	1014	35	2	1119	2	KLHL2	4	166231704	Splice_Site	SNP	G	TCGA-44-2657-01A-01D-1105-08	10697856	166231704	24922572	294	104893											
CPE	1363	broad.mit.edu	37	chr4	166325426	166325426	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctccctctgcaggtgtggCcaagatcccctcttgcgggc	12	15	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166325426	T	T	166325426	1	4	107	0	1	0	0	0	0	0	0	0	3831	754	26	4		4	CPE	4	166325426	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	93722	166325426	24828850	295	104894											
TLL1	7092	broad.mit.edu	37	chr4	167020816	167020816	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacattgtattataaatgGcttgacaaaatataacacgt	6	6	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167020816	T	T	167020816	1	4	107	0	1	0	0	0	0	0	0	0	16068	1218	42	3		3	TLL1	4	167020816	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	695390	167020816	24133460	296	104895											
DDX60	55601	broad.mit.edu	37	chr4	169201524	169201524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctttccaggctttcaagCaagcagttaaccccaccatt	6	13	2	0	rs137933604		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169201524	A	A	169201524	3	1	107	1	0	0	0	0	1	0	0	0	4411	710	25	3	3298	3	DDX60	4	169201524	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2180708	169201524	21952752	297	104896											
GLRA3	8001	broad.mit.edu	37	chr4	175636673	175636673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatacatgtttgtacatcCatgggaaaattcttgagatc	7	6	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175636673	A	A	175636673	3	1	107	1	0	0	0	0	1	0	0	0	6520	594	21	2	878	2	GLRA3	4	175636673	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	6435149	175636673	15517603	298	104897											
VEGFC	7424	broad.mit.edu	37	chr4	177632900	177632900	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaaagagtgagattagctCtatataagtagctgcctagt	10	5	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177632900	G	G	177632900	1	3	107	0	1	0	0	0	0	0	0	0	17279	928	32	4		4	VEGFC	4	177632900	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1996227	177632900	13521376	299	104898											
FAT1	2195	broad.mit.edu	37	chr4	187538323	187538323	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccattcattctgtatagTttcaacggcaaactgtccta	5	11	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187538323	C	C	187538323	3	2	107	1	0	0	0	0	1	0	0	0	5746	1725	60	5	4923	5	FAT1	4	187538323	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	9905423	187538323	3615953	300	104899											
TRIML2	205860	broad.mit.edu	37	chr4	189025800	189025800	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgggattacaggcgtgAgccaccacacccagcttctt	11	13	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189025800	G	G	189025800	1	3	107	0	1	0	0	0	0	0	0	0	16676	319	11	5		5	TRIML2	4	189025800	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1487477	189025800	2128476	301	104900											
EXOC3	11336	broad.mit.edu	37	chr5	464620	464620	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catccagcgagtccctccgtGagtgaacgttcacttgttgt	10	12	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	464620	C	C	464620	1	2	107	0	1	0	0	0	0	0	0	0	5345	1305	45	4		4	EXOC3	5	464620	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08		464620	180450640	302	104901											
ZDHHC11	79844	broad.mit.edu	37	chr5	819583	819584	+	Intron	DNP	CC	AA	AA													tcagcttgggggacctcagaCcacacattctgcacatggcc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	819584	AA	AA	819583	1	1	107	0	1	0	0	0	0	0	0	0	17727	522	18	3		3	ZDHHC11	5	819583	Intron	DNP	CC	TCGA-44-2657-01A-01D-1105-08	354963	819583	180095677	303	104902											
SLC6A18	348932	broad.mit.edu	37	chr5	1244504	1244504	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacggtgagctgccgccccGccgagtgctcctctgggacc	13	16	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1244504	A	A	1244504	1	1	107	0	1	0	0	0	0	0	0	0	14795	1102	38	4		4	SLC6A18	5	1244504	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	424921	1244504	179670756	304	104903											
TERT	7015	broad.mit.edu	37	chr5	1264701	1264701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcagggacacctcggacCagggtcctaaggcagagggg	15	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1264701	A	A	1264701	2	1	107	1	0	0	0	0	0	0	0	1	15886	581	21	2		2	TERT	5	1264701	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	20197	1264701	179650559	305	104904											
ADAMTS16	170690	broad.mit.edu	37	chr5	5146362	5146362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggttgagtctcttcacCttcggctgaaaggctccagg	12	12	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5146362	A	A	5146362	3	1	107	1	0	0	0	0	1	0	0	0	261	681	24	2	305	2	ADAMTS16	5	5146362	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3881661	5146362	175768898	306	104905											
CTNND2	1501	broad.mit.edu	37	chr5	11018034	11018034	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacgtctgtgacgcctctcAgggtcccgtgttgagtgttt	12	12	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11018034	T	T	11018034	1	4	107	0	1	0	0	0	0	0	0	0	4054	203	7	5		5	CTNND2	5	11018034	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	5871672	11018034	169897226	307	104906											
CDH12	1010	broad.mit.edu	37	chr5	21883647	21883648	+	Intron	DNP	GG	CT	CT													aagaaccaacttaaagatatGgctattgctactggtggtgc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	21883648	CT	CT	21883647	1	2	107	0	1	0	0	0	0	0	0	0	3128	1363	47	4		4	CDH12	5	21883647	Intron	DNP	GG	TCGA-44-2657-01A-01D-1105-08	10865613	21883647	159031613	308	104907											
PRDM9	56979	broad.mit.edu	37	chr5	23509208	23509208	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagaacagagcggaagccCatggtgagaagtggaggaag	18	5	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509208	A	A	23509208	2	1	107	1	0	0	0	0	0	0	0	1	12569	581	21	2		2	PRDM9	5	23509208	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1625561	23509208	157406052	309	104908											
CDH10	1008	broad.mit.edu	37	chr5	24491831	24491831	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcagtgtgcctgtgctgCtctgaattgggtaatcattg	13	7	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24491831	T	T	24491831	3	4	107	1	0	0	0	0	1	0	0	0	3126	797	28	4	644	4	CDH10	5	24491831	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	982623	24491831	156423429	310	104909											
CDH9	1007	broad.mit.edu	37	chr5	26881265	26881265	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtctcggtcactatcatCacccccatacatatcggcaa	5	14	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881265	A	A	26881265	3	1	107	1	0	0	0	0	1	0	0	0	3147	826	29	3	23	3	CDH9	5	26881265	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2389434	26881265	154033995	311	104910											
PDZD2	23037	broad.mit.edu	37	chr5	32089086	32089086	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttcaagccaaaaaaagggCgttactgtgcctcatagccc	9	11	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32089086	T	T	32089086	2	4	107	1	0	0	0	0	0	0	0	1	11795	755	27	4		4	PDZD2	5	32089086	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	5207821	32089086	148826174	312	104911											
NPR3	4883	broad.mit.edu	37	chr5	32712141	32712141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcagcgtggagggcaacGggactgggaggcggcttctg	20	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32712141	T	T	32712141	3	4	107	1	0	0	0	0	1	0	0	0	10691	1116	39	1	261	1	NPR3	5	32712141	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	623055	32712141	148203119	313	104912											
SPEF2	79925	broad.mit.edu	37	chr5	35659145	35659145	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatcgggaggaacagctgAttaaccggctgatgcggcag	14	9	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35659145	T	T	35659145	3	4	107	1	0	0	0	0	1	0	0	0	15153	333	12	5	1033	5	SPEF2	5	35659145	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	2947004	35659145	145256115	314	104913											
SPEF2	79925	broad.mit.edu	37	chr5	35670143	35670144	+	Intron	INS	-	T	T													accattgattcatctctaccINSttttttttgtgcgatagtct							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35670144	T	T	35670143	6	5	107	0	1	1	1	0	0	0	0	0	15153	696	24	0		0	SPEF2	5	35670143	Intron	INS	-	TCGA-44-2657-01A-01D-1105-08	10998	35670143	145245117	315	104914											
NUP155	9631	broad.mit.edu	37	chr5	37351502	37351502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtttattagctactccaCagtttttaaaaatctttgca	4	8	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37351502	A	A	37351502	1	1	107	0	1	0	0	0	0	0	0	0	10851	493	17	3		3	NUP155	5	37351502	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1681359	37351502	143563758	316	104915											
C5orf34	375444	broad.mit.edu	37	chr5	43495262	43495262	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgctttgatgacacccacCgcaactgtctgtctcatatc	6	14	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43495262	T	T	43495262	1	4	107	0	1	0	0	0	0	0	0	0	2316	667	23	4		4	C5orf34	5	43495262	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	6143760	43495262	137419998	317	104916											
IL31RA	133396	broad.mit.edu	37	chr5	55212479	55212479	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttttccaggataagcTaaacctgaaggagtctgatg	9	7	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55212479	A	A	55212479	3	1	107	1	0	0	0	0	1	0	0	0	7761	1522	53	5	1884	5	IL31RA	5	55212479	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	11717217	55212479	125702781	318	104917											
NLN	57486	broad.mit.edu	37	chr5	65028881	65028881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttcccacccccctcctcTaactggcaccattgcccata	4	19	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65028881	C	C	65028881	1	2	107	0	1	0	0	0	0	0	0	0	10562	1537	53	5		5	NLN	5	65028881	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	9816402	65028881	115886379	319	104918											
CD180	4064	broad.mit.edu	37	chr5	66492491	66492491	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggctaggattgcttggtGggtttacctaatgcttggag	14	6	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66492491	A	A	66492491	1	1	107	0	1	0	0	0	0	0	0	0	3002	1363	47	4		4	CD180	5	66492491	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	1463610	66492491	114422769	320	104919											
AGGF1	55109	broad.mit.edu	37	chr5	76330360	76330360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaggtatttagcttataGtgaggatatgctaacactgt	9	6	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76330360	T	T	76330360	1	4	107	0	1	0	0	0	0	0	0	0	382	1044	36	3		3	AGGF1	5	76330360	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	9837869	76330360	104584900	321	104920											
SPZ1	84654	broad.mit.edu	37	chr5	79617271	79617271	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaatacccagttcaatattCatgttgcaagaaaagctctt	6	9	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79617271	A	A	79617271	3	1	107	1	0	0	0	0	1	0	0	0	15245	826	29	3	1239	3	SPZ1	5	79617271	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3286911	79617271	101297989	322	104921											
MCTP1	79772	broad.mit.edu	37	chr5	94288819	94288819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtggcgaagagcagaacaCatctctggtgaaaactctca	11	9	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94288819	A	A	94288819	1	1	107	0	1	0	0	0	0	0	0	0	9493	493	17	3		3	MCTP1	5	94288819	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	14671548	94288819	86626441	323	104922											
TTC37	9652	broad.mit.edu	37	chr5	94876366	94876366	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgatcaattttcatgaaCaaacttgaggaataaatgag	7	4	2	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94876366	T	T	94876366	1	4	107	0	1	0	0	0	0	0	0	0	16831	493	17	4		4	TTC37	5	94876366	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	587547	94876366	86038894	324	104923											
SLC27A6	28965	broad.mit.edu	37	chr5	128321030	128321030	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttacctctggaacaacagGtatgatccaattcttttgaa	6	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128321030	A	A	128321030	5	1	107	1	0	0	0	0	0	0	1	0	14644	1275	44	4	692	4	SLC27A6	5	128321030	Splice_Site	SNP	G	TCGA-44-2657-01A-01D-1105-08	33444664	128321030	52594230	325	104924											
KIF3A	11127	broad.mit.edu	37	chr5	132062006	132062006	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgcctttccagtgtttGtacttctcaatatcagaaaa	6	8	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132062006	A	A	132062006	1	1	107	0	1	0	0	0	0	0	0	0	8370	1392	48	4		4	KIF3A	5	132062006	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	3740976	132062006	48853254	326	104925											
FAM13B	51306	broad.mit.edu	37	chr5	137346774	137346774	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaactcatagtagttttccaGaagtccagccattatcctgc	6	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137346774	A	A	137346774	2	1	107	1	0	0	0	0	0	0	0	1	5499	933	33	4		4	FAM13B	5	137346774	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	5284768	137346774	43568486	327	104926											
BRD8	10902	broad.mit.edu	37	chr5	137488440	137488440	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaatccagccaaacccactCgtgtcccatctgtaaataca	5	14	1	1	rs148605042	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137488440	G	G	137488440	3	3	107	1	0	0	0	0	1	0	0	0	1515	893	31	4	1148	4	BRD8	5	137488440	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	141666	137488440	43426820	328	104927											
CDC23	8697	broad.mit.edu	37	chr5	137527306	137527306	+	Intron	SNP	C	A	A													gaaggttaagaccctgcaagCctcccagaagttcagattta							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137527306	A	A	137527306	1	1	107	0	1	0	0	0	0	0	0	0	3091	754	26	3		3	CDC23	5	137527306	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	38866	137527306	43387954	329	104928	456	2									
CDC23	8697	broad.mit.edu	37	chr5	137527308	137527308	+	Intron	SNP	T	A	A													aggttaagaccctgcaagccTcccagaagttcagatttata							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137527308	A	A	137527308	1	1	107	0	1	0	0	0	0	0	0	0	3091	1566	54	5		5	CDC23	5	137527308	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	2	137527308	43387952	330	104929	456	2									
SLC23A1	9963	broad.mit.edu	37	chr5	138714949	138714949	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagccaggcgggcacaggcGtagtaatctccgatggactc	13	13	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138714949	A	A	138714949	2	1	107	1	0	0	0	0	0	0	0	1	14576	1140	40	4		4	SLC23A1	5	138714949	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	1187641	138714949	42200311	331	104930											
PCDHA6	56142	broad.mit.edu	37	chr5	140209948	140209948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcagaggcggcagaggGtgtgctccggggagggccca	20	11	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140209948	T	T	140209948	3	4	107	1	0	0	0	0	1	0	0	0	11622	1261	44	3	2274	3	PCDHA6	5	140209948	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1494999	140209948	40705312	332	104931											
PCDHA1	56147	broad.mit.edu	37	chr5	140242795	140242795	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtcgctggcggagagcaGccaagcgaggaaggtcccat	17	11	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140242795	A	A	140242795	1	1	107	0	1	0	0	0	0	0	0	0	11613	986	34	4		4	PCDHA1	5	140242795	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	32847	140242795	40672465	333	104932											
PCDHB4	56131	broad.mit.edu	37	chr5	140503451	140503451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcacaatggcgaggtgcGcaccgccaggctgctgagcg	17	13	0	1	rs149487286		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140503451	T	T	140503451	3	4	107	1	0	0	0	0	1	0	0	0	11638	1087	38	3	1873	3	PCDHB4	5	140503451	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	260656	140503451	40411809	334	104933											
PCDHB7	56129	broad.mit.edu	37	chr5	140553151	140553151	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgattttgtgcggtcGctctacaaggtgcaggtgcc	13	12	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140553151	A	A	140553151	2	1	107	1	0	0	0	0	0	0	0	1	11641	1074	38	4		4	PCDHB7	5	140553151	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	49700	140553151	40362109	335	104934											
PCDHB9	56127	broad.mit.edu	37	chr5	140569345	140569345	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcttgttggctaactaaaTtgtgtatgcccaccacaaag	7	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140569345	C	C	140569345	1	2	107	0	1	0	0	0	0	0	0	0	11643	1508	52	5		5	PCDHB9	5	140569345	3'UTR	SNP	T	TCGA-44-2657-01A-01D-1105-08	16194	140569345	40345915	336	104935											
PCDHB10	56126	broad.mit.edu	37	chr5	140573608	140573608	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcgctgctgccgccccaaGacccgcacctgcccctcgcc	8	23	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140573608	T	T	140573608	3	4	107	1	0	0	0	0	1	0	0	0	11629	942	33	3	1485	3	PCDHB10	5	140573608	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4263	140573608	40341652	337	104936											
PCDHB12	56124	broad.mit.edu	37	chr5	140588987	140588987	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcaatgctgtaaaaagcTacacaataaatccgaactct	5	9	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140588987	C	C	140588987	3	2	107	1	0	0	0	0	1	0	0	0	11631	1522	53	5	510	5	PCDHB12	5	140588987	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	15379	140588987	40326273	338	104937											
PCDHB13	56123	broad.mit.edu	37	chr5	140594338	140594338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcaggttaacactcacaGcactggatggtggctctccg	11	12	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140594338	T	T	140594338	3	4	107	1	0	0	0	0	1	0	0	0	11632	971	34	3	645	3	PCDHB13	5	140594338	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5351	140594338	40320922	339	104938											
PCDHGA9	56107	broad.mit.edu	37	chr5	140783119	140783119	+	Frame_Shift_Del	DEL	G	-	-													ctggtgctggagcgcgccctGgacagggaggaggcaactgc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140783119	-	-	140783119	7	5	107	1	0	1	0	1	0	0	0	0	11655	1335	47	0	602	0	PCDHGA9	5	140783119	Frame_Shift_Del	DEL	G	TCGA-44-2657-01A-01D-1105-08	188781	140783119	40132141	340	104939											
PCDHGC5	56097	broad.mit.edu	37	chr5	140869878	140869878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattggcctctttggccaaCcctgtcctagagagcacacc	8	15	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140869878	A	A	140869878	3	1	107	1	0	0	0	0	1	0	0	0	11665	506	18	3	1073	3	PCDHGC5	5	140869878	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	86759	140869878	40045382	341	104940											
DIAPH1	1729	broad.mit.edu	37	chr5	140961983	140961983	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtgaggtccctttattctCtacccctttcccatttttaa	4	13	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140961983	G	G	140961983	1	3	107	0	1	0	0	0	0	0	0	0	4558	928	32	4		4	DIAPH1	5	140961983	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	92105	140961983	39953277	342	104941											
STK32A	202374	broad.mit.edu	37	chr5	146722718	146722718	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattttgttctattcattcgAgctctacttacaaactcctc	3	11	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146722718	T	T	146722718	1	4	107	0	1	0	0	0	0	0	0	0	15415	319	11	5		5	STK32A	5	146722718	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	5760735	146722718	34192542	343	104942											
DPYSL3	1809	broad.mit.edu	37	chr5	146797952	146797953	+	Intron	INS	-	T	T													aagagagttctggagataacINSacattcattaaacacacact							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146797953	T	T	146797952	6	5	107	0	1	1	1	0	0	0	0	0	4788	493	17	0		0	DPYSL3	5	146797952	Intron	INS	-	TCGA-44-2657-01A-01D-1105-08	75234	146797952	34117308	344	104943											
JAKMIP2	9832	broad.mit.edu	37	chr5	147040494	147040494	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttctacatgggtctgatGggattactgtactaaccagc	12	8	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147040494	A	A	147040494	1	1	107	0	1	0	0	0	0	0	0	0	8011	1363	47	4		4	JAKMIP2	5	147040494	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	242542	147040494	33874766	345	104944											
JAKMIP2	9832	broad.mit.edu	37	chr5	147040887	147040887	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccctcacagcctgcagcTccttcatcttctcctcatgg	5	18	6	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147040887	C	C	147040887	3	2	107	1	0	0	0	0	1	0	0	0	8011	1551	54	5	2257	5	JAKMIP2	5	147040887	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	393	147040887	33874373	346	104945											
FAT2	2196	broad.mit.edu	37	chr5	150923860	150923860	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgagatggaagtggtataGaccaattgggaaaaagtggg	15	3	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150923860	T	T	150923860	2	4	107	1	0	0	0	0	0	0	0	1	5747	929	33	3		3	FAT2	5	150923860	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3882973	150923860	29991400	347	104946											
SLIT3	6586	broad.mit.edu	37	chr5	168213055	168213055	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccagtcctgcaggaagcCatcacctcggccagttctgg	10	15	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168213055	T	T	168213055	1	4	107	0	1	0	0	0	0	0	0	0	14855	609	21	4		4	SLIT3	5	168213055	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	17289195	168213055	12702205	348	104947											
DOCK2	1794	broad.mit.edu	37	chr5	169507395	169507395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacacaacaaagtgggccagGcatcctggagtgagaggctc	13	10	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169507395	A	A	169507395	1	1	107	0	1	0	0	0	0	0	0	0	4727	1218	42	4		4	DOCK2	5	169507395	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1294340	169507395	11407865	349	104948											
DOCK2	1794	broad.mit.edu	37	chr5	169509814	169509814	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaagctggccagcaaatcGgctgaagaaggcaaacagat	11	9	0	3	rs140457281	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169509814	A	A	169509814	2	1	107	1	0	0	0	0	0	0	0	1	4727	1103	39	4		4	DOCK2	5	169509814	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	2419	169509814	11405446	350	104949											
FOXI1	2299	broad.mit.edu	37	chr5	169535126	169535126	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaaatttccgcaggaaaagGaagagaaaatcagatgtttc	11	5	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169535126	C	C	169535126	3	2	107	1	0	0	0	0	1	0	0	0	6069	1165	41	4	654	4	FOXI1	5	169535126	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	25312	169535126	11380134	351	104950											
GABRP	2568	broad.mit.edu	37	chr5	170236509	170236509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaaatggggacactctGccaggctatggtggaggact	13	9	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170236509	T	T	170236509	1	4	107	0	1	0	0	0	0	0	0	0	6234	1334	46	3		3	GABRP	5	170236509	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	701383	170236509	10678751	352	104951											
NPM1	4869	broad.mit.edu	37	chr5	170819801	170819801	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcggtctgcccctggagGtggtagcaaggttccacagg	15	10	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170819801	A	A	170819801	3	1	107	1	0	0	0	0	1	0	0	0	10682	1261	44	4	458	4	NPM1	5	170819801	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	583292	170819801	10095459	353	104952											
STK10	6793	broad.mit.edu	37	chr5	171479999	171479999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatggctctcatccagggcCttcagtttctgggtttcgtg	11	10	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171479999	A	A	171479999	3	1	107	1	0	0	0	0	1	0	0	0	15404	680	24	2	214	2	STK10	5	171479999	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	660198	171479999	9435261	354	104953											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171766609	171766609	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgacgcagacatgtcTgaagatgccttcctcaggac	10	13	2	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171766609	A	A	171766609	2	1	107	1	0	0	0	0	0	0	0	1	14370	1567	55	5		5	SH3PXD2B	5	171766609	Silent	SNP	T	TCGA-44-2657-01A-01D-1105-08	286610	171766609	9148651	355	104954											
HMP19	51617	broad.mit.edu	37	chr5	173531141	173531141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctttctagcacaccatgCtgcctgccagttctaggctc	7	17	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173531141	A	A	173531141	1	1	107	0	1	0	0	0	0	0	0	0	7312	812	28	3		3	HMP19	5	173531141	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1764532	173531141	7384119	356	104955											
FAM153B	202134	broad.mit.edu	37	chr5	175530806	175530806	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgtattggggaacccctctCatactgatgagtaatccaga	9	10	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175530806	T	T	175530806	1	4	107	0	1	0	0	0	0	0	0	0	5507	841	29	4		4	FAM153B	5	175530806	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1999665	175530806	5384454	357	104956											
HK3	3101	broad.mit.edu	37	chr5	176308746	176308746	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtccctggtctgaaggcgCtggatctgctggccccggaa	14	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176308746	T	T	176308746	2	4	107	1	0	0	0	0	0	0	0	1	7259	796	28	4		4	HK3	5	176308746	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	777940	176308746	4606514	358	104957											
GFPT2	9945	broad.mit.edu	37	chr5	179758403	179758403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtctcactcagttcccaCactggtttccgcaaggaaat	9	12	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179758403	A	A	179758403	1	1	107	0	1	0	0	0	0	0	0	0	6410	493	17	3		3	GFPT2	5	179758403	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3449657	179758403	1156857	359	104958											
FLT4	2324	broad.mit.edu	37	chr5	180048156	180048156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccacacgatgctgggcGcgtgcgctccggccaccaag	13	15	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180048156	T	T	180048156	3	4	107	1	0	0	0	0	1	0	0	0	6002	1087	38	3	2050	3	FLT4	5	180048156	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	289753	180048156	867104	360	104959											
BTNL3	10917	broad.mit.edu	37	chr5	180416006	180416006	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcatctgttttcatagtgtGagatcaacccacaggaatat	8	8	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180416006	T	T	180416006	1	4	107	0	1	0	0	0	0	0	0	0	1576	1305	45	3		3	BTNL3	5	180416006	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	367850	180416006	499254	361	104960											
DUSP22	56940	broad.mit.edu	37	chr6	348228	348228	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgccaaccccaacgtggGcttccagagacagctccagg	11	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	348228	A	A	348228	3	1	107	1	0	0	0	0	1	0	0	0	4861	1203	42	4	411	4	DUSP22	6	348228	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08		348228	170766839	362	104961											
MYLK4	340156	broad.mit.edu	37	chr6	2678413	2678413	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaggccctgcttccttatCatccctactgcgcccggagc	10	16	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2678413	G	G	2678413	1	3	107	0	1	0	0	0	0	0	0	0	10153	841	29	4		4	MYLK4	6	2678413	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2330185	2678413	168436654	363	104962											
SYCP2L	221711	broad.mit.edu	37	chr6	10956295	10956295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaataactcatcctctggGcaactgatgaattgagcaag	8	10	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10956295	T	T	10956295	1	4	107	0	1	0	0	0	0	0	0	0	15552	1218	42	3		3	SYCP2L	6	10956295	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	8277882	10956295	160158772	364	104963											
RANBP9	10048	broad.mit.edu	37	chr6	13634814	13634814	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaacaaacctaattttaGaaatatcatacttgcagctt	3	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13634814	A	A	13634814	1	1	107	0	1	0	0	0	0	0	0	0	13140	957	33	4		4	RANBP9	6	13634814	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2678519	13634814	157480253	365	104964											
SLC17A2	10246	broad.mit.edu	37	chr6	25925891	25925891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctggctccaatgttacaCtgggagtatctttacgaagg	12	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25925891	A	A	25925891	1	1	107	0	1	0	0	0	0	0	0	0	14530	580	20	3		3	SLC17A2	6	25925891	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	12291077	25925891	145189176	366	104965											
HIST1H1B	3009	broad.mit.edu	37	chr6	27835222	27835222	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttagcagcgccggcgccgGcagccttcttagttgccttc	12	15	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27835222	C	C	27835222	3	2	107	1	0	0	0	0	1	0	0	0	7190	1203	42	4	598	4	HIST1H1B	6	27835222	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1909331	27835222	143279845	367	104966											
ZNF192	7745	broad.mit.edu	37	chr6	28116623	28116623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtagaaggaggtatgcGtgctatgactgtgggagtcc	16	5	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28116623	T	T	28116623	1	4	107	0	1	0	0	0	0	0	0	0	17882	1160	40	3		3	ZNF192	6	28116623	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	281401	28116623	142998444	368	104967											
GPX5	2880	broad.mit.edu	37	chr6	28493648	28493648	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgagttctgtgatcctcaCcccgacctcatgcgtcggga	10	13	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28493648	G	G	28493648	1	3	107	0	1	0	0	0	0	0	0	0	6809	522	18	4		4	GPX5	6	28493648	5'Flank	SNP	C	TCGA-44-2657-01A-01D-1105-08	377025	28493648	142621419	369	104968											
TRIM15	89870	broad.mit.edu	37	chr6	30136040	30136040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaagctatctctgagCcccttcctaaccatgtctgc	7	15	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30136040	A	A	30136040	1	1	107	0	1	0	0	0	0	0	0	0	16614	754	26	3		3	TRIM15	6	30136040	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1642392	30136040	140979027	370	104969											
BAT2	7916	broad.mit.edu	37	chr6	31597577	31597577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacccccggctcctccagGgtcgtccccctctagacttc	9	19	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31597577	T	T	31597577	3	4	107	1	0	0	0	0	1	0	0	0	1324	1232	43	2	2259	2	BAT2	6	31597577	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1461537	31597577	139517490	371	104970											
BAT3	7917	broad.mit.edu	37	chr6	31612763	31612763	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaccacgggttccacactCtggtgggaaatccggatgac	12	11	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31612763	T	T	31612763	2	4	107	1	0	0	0	0	0	0	0	1	1327	912	32	4		4	BAT3	6	31612763	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	15186	31612763	139502304	372	104971											
PSMB9	5698	broad.mit.edu	37	chr6	32825922	32825922	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaggtcaggtgagtttctCccaaagcactctctcctctg	10	12	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32825922	T	T	32825922	1	4	107	0	1	0	0	0	0	0	0	0	12790	870	30	4		4	PSMB9	6	32825922	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1213159	32825922	138289145	373	104972											
RGL2	5863	broad.mit.edu	37	chr6	33262444	33262445	+	Intron	DEL	AC	-	-													cttgttacatcattgcaatgAcacacacacacaccactgac							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33262445	-	-	33262444	6	5	107	0	1	1	0	1	0	0	0	0	13385	290	10	0		0	RGL2	6	33262444	Intron	DEL	AC	TCGA-44-2657-01A-01D-1105-08	436522	33262444	137852623	374	104973											
ITPR3	3710	broad.mit.edu	37	chr6	33633509	33633509	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgctttgggggccgctgAgtgaactcatgaaagccatg	14	8	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33633509	G	G	33633509	1	3	107	0	1	0	0	0	0	0	0	0	7992	319	11	5		5	ITPR3	6	33633509	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	371065	33633509	137481558	375	104974											
GRM4	2914	broad.mit.edu	37	chr6	33995926	33995926	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaggttctcgcagagctcaGacttggcctctccgttgggc	12	13	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33995926	T	T	33995926	3	4	107	1	0	0	0	0	1	0	0	0	6865	942	33	3	86	3	GRM4	6	33995926	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	362417	33995926	137119141	376	104975											
BRPF3	27154	broad.mit.edu	37	chr6	36198206	36198206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcttgcatttcaggcaGtggcttccaagggacaaagt	12	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36198206	T	T	36198206	3	4	107	1	0	0	0	0	1	0	0	0	1530	1020	36	3	3484	3	BRPF3	6	36198206	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2202280	36198206	134916861	377	104976											
DNAH8	1769	broad.mit.edu	37	chr6	38843557	38843557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggacttaccagaaatacCtaaaggctcaaatcaaacca	6	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38843557	A	A	38843557	3	1	107	1	0	0	0	0	1	0	0	0	4647	681	24	2	7354	2	DNAH8	6	38843557	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2645351	38843557	132271510	378	104977											
UNC5CL	222643	broad.mit.edu	37	chr6	40999725	40999725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagggaaggagaggagaCaggatgggaaaagagagggg	23	1	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40999725	A	A	40999725	1	1	107	0	1	0	0	0	0	0	0	0	17120	493	17	3		3	UNC5CL	6	40999725	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2156168	40999725	130115342	379	104978											
CUL7	9820	broad.mit.edu	37	chr6	43020118	43020118	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacgtggacagtgtgaagtaGaggagcaggagggatagtgc	18	5	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43020118	C	C	43020118	3	2	107	1	0	0	0	0	1	0	0	0	4093	933	33	4	4883	4	CUL7	6	43020118	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2020393	43020118	128094949	380	104979											
GPR116	221395	broad.mit.edu	37	chr6	46826344	46826344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcatccagaagaagacgCtgaggtagaagaagtggatg	14	6	1	6			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46826344	A	A	46826344	3	1	107	1	0	0	0	0	1	0	0	0	6698	797	28	3	764	3	GPR116	6	46826344	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3806226	46826344	124288723	381	104980											
GPR110	266977	broad.mit.edu	37	chr6	46993516	46993516	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggatgattgtttccacaGcataacccaacctagcctga	8	11	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46993516	A	A	46993516	1	1	107	0	1	0	0	0	0	0	0	0	6692	986	34	4		4	GPR110	6	46993516	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	167172	46993516	124121551	382	104981											
TNFRSF21	27242	broad.mit.edu	37	chr6	47251938	47251938	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcttggggcccttgatggGcgtgctggacttctcgcccc	13	15	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47251938	C	C	47251938	3	2	107	1	0	0	0	0	1	0	0	0	16418	1203	42	4	1004	4	TNFRSF21	6	47251938	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	258422	47251938	123863129	383	104982											
GCM1	8521	broad.mit.edu	37	chr6	52993667	52993667	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaaatgtccactgtaactAccaggcaattggacgccttc	7	11	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52993667	T	T	52993667	2	4	107	1	0	0	0	0	0	0	0	1	6359	378	14	5		5	GCM1	6	52993667	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	5741729	52993667	118121400	384	104983											
BMP5	653	broad.mit.edu	37	chr6	55638990	55638990	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgaatggttgttttgacTgaggtccctgtcttcccaca	9	11	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55638990	C	C	55638990	3	2	107	1	0	0	0	0	1	0	0	0	1469	1580	55	5	496	5	BMP5	6	55638990	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	2645323	55638990	115476077	385	104984											
BAI3	577	broad.mit.edu	37	chr6	70034795	70034795	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccaccactgcatttttgcActttttcttcctggcttcat	4	13	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70034795	T	T	70034795	3	4	107	1	0	0	0	0	1	0	0	0	1305	159	6	5	2920	5	BAI3	6	70034795	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	14395805	70034795	101080272	386	104985											
COL19A1	1310	broad.mit.edu	37	chr6	70778228	70778228	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagtttgttttaatcaaCaaaataattattaattttca	2	3	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70778228	A	A	70778228	1	1	107	0	1	0	0	0	0	0	0	0	3708	493	17	3		3	COL19A1	6	70778228	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	743433	70778228	100336839	387	104986											
ELOVL4	6785	broad.mit.edu	37	chr6	80631314	80631314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatatatgcaattaaacgCaagcagtatattcctgaaaa	5	8	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80631314	A	A	80631314	1	1	107	0	1	0	0	0	0	0	0	0	5118	725	25	3		3	ELOVL4	6	80631314	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	9853086	80631314	90483753	388	104987											
IBTK	25998	broad.mit.edu	37	chr6	82912444	82912444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacatttatgtctaaagctGtacgatttgaacatttggaa	7	5	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82912444	T	T	82912444	1	4	107	0	1	0	0	0	0	0	0	0	7546	1392	48	3		3	IBTK	6	82912444	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2281130	82912444	88202623	389	104988											
FUT9	10690	broad.mit.edu	37	chr6	96651063	96651063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaaggaattcttcgccCatttttaattgtctgcatta	5	9	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96651063	A	A	96651063	3	1	107	1	0	0	0	0	1	0	0	0	6171	594	21	2	34	2	FUT9	6	96651063	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	13738619	96651063	74464004	390	104989											
ARMC2	84071	broad.mit.edu	37	chr6	109225654	109225654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagactatatcacataaaaGctttgtttaatgctttattt	5	5	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109225654	T	T	109225654	1	4	107	0	1	0	0	0	0	0	0	0	955	986	34	3		3	ARMC2	6	109225654	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	12574591	109225654	61889413	391	104990											
ZBTB24	9841	broad.mit.edu	37	chr6	109798052	109798052	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtacggccgctcgcctGtgtgcatcctggtgtggacc	15	12	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109798052	C	C	109798052	3	2	107	1	0	0	0	0	1	0	0	0	17657	1377	48	4	1079	4	ZBTB24	6	109798052	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	572398	109798052	61317015	392	104991											
SLC22A16	85413	broad.mit.edu	37	chr6	110763908	110763908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcaaatggacagacgccCatgtccgagacttcatgcca	9	12	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763908	A	A	110763908	3	1	107	1	0	0	0	0	1	0	0	0	14560	595	21	2	1031	2	SLC22A16	6	110763908	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	965856	110763908	60351159	393	104992											
FAM26F	441168	broad.mit.edu	37	chr6	116779694	116779694	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcactgctgaccagctgggcGatgaagctgggtgtctggac	16	10	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116779694	A	A	116779694	1	1	107	0	1	0	0	0	0	0	0	0	5602	1073	37	4		4	FAM26F	6	116779694	5'Flank	SNP	G	TCGA-44-2657-01A-01D-1105-08	6015786	116779694	54335373	394	104993											
ENPP3	5169	broad.mit.edu	37	chr6	132058425	132058425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattaatatgtaatagtaGtatgcctgttgtgcagtatg	9	3	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132058425	T	T	132058425	1	4	107	0	1	0	0	0	0	0	0	0	5173	1044	36	3		3	ENPP3	6	132058425	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	15278731	132058425	39056642	395	104994											
VNN2	8875	broad.mit.edu	37	chr6	133065704	133065704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaattaatcattttgaaaCcatcctagatataatgtata	4	6	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133065704	A	A	133065704	1	1	107	0	1	0	0	0	0	0	0	0	17310	522	18	3		3	VNN2	6	133065704	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1007279	133065704	38049363	396	104995											
GRM1	2911	broad.mit.edu	37	chr6	146708273	146708273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttacaatgcacacttttTagtcctcatgtcaaggagta	6	8	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146708273	A	A	146708273	1	1	107	0	1	0	0	0	0	0	0	0	6862	1769	61	5		5	GRM1	6	146708273	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	13642569	146708273	24406794	397	104996											
AKAP12	9590	broad.mit.edu	37	chr6	151669913	151669913	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatggctactaagtcagcGgttgttcacgacatcacaga	11	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151669913	A	A	151669913	2	1	107	1	0	0	0	0	0	0	0	1	448	1103	39	4		4	AKAP12	6	151669913	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	4961640	151669913	19445154	398	104997											
C6orf97	80129	broad.mit.edu	37	chr6	151865941	151865941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggttgagtttgggggtGgcaggagaatggcacagtag	19	4	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151865941	T	T	151865941	1	4	107	0	1	0	0	0	0	0	0	0	2399	1363	47	2		2	C6orf97	6	151865941	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	196028	151865941	19249126	399	104998											
SYNE1	23345	broad.mit.edu	37	chr6	152638170	152638170	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtaaactcctcagtttcTtgagctataaatcagtcttc	5	9	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152638170	C	C	152638170	1	2	107	0	1	0	0	0	0	0	0	0	15564	1624	56	5		5	SYNE1	6	152638170	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	772229	152638170	18476897	400	104999											
TIAM2	26230	broad.mit.edu	37	chr6	155500340	155500340	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggccctttgattttgaaAaatgtcatttttggggaaaa	9	4	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155500340	T	T	155500340	1	4	107	0	1	0	0	0	0	0	0	0	16014	29	1	5		5	TIAM2	6	155500340	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2862170	155500340	15614727	401	105000											
TMEM181	57583	broad.mit.edu	37	chr6	159028287	159028287	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgcagtgcctgtttgcGcattccctccggaaattttc	10	11	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159028287	C	C	159028287	2	2	107	1	0	0	0	0	0	0	0	1	16223	1074	38	4		4	TMEM181	6	159028287	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3527947	159028287	12086780	402	105001											
SLC22A3	6581	broad.mit.edu	37	chr6	160864687	160864687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagtttcgctctgttcaGgtctgtgtgattttggggga	15	6	3	1	rs9365165		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160864687	T	T	160864687	3	4	107	1	0	0	0	0	1	0	0	0	14569	1000	35	2	1457	2	SLC22A3	6	160864687	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1836400	160864687	10250380	403	105002											
AGPAT4	56895	broad.mit.edu	37	chr6	161575121	161575121	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggaagtcacatggggGtcccacggtcacagtcctgc	13	13	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161575121	A	A	161575121	1	1	107	0	1	0	0	0	0	0	0	0	389	1276	44	4		4	AGPAT4	6	161575121	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	710434	161575121	9539946	404	105003											
PARK2	5071	broad.mit.edu	37	chr6	162683510	162683513	+	Intron	DEL	AAAC	-	-													tgctccatgcagactgcactAaacaaacaaacaaaatgctt							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	162683513	-	-	162683510	6	5	107	0	1	1	0	1	0	0	0	0	11543	377	13	0		0	PARK2	6	162683510	Intron	DEL	AAAC	TCGA-44-2657-01A-01D-1105-08	1108389	162683510	8431557	405	105004											
THBS2	7058	broad.mit.edu	37	chr6	169625211	169625211	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgctcagaagccattttcctCcacgcccatgagctgagaga	9	13	1	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169625211	G	G	169625211	1	3	107	0	1	0	0	0	0	0	0	0	15977	870	30	4		4	THBS2	6	169625211	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	6941701	169625211	1489856	406	105005											
PDCD2	5134	broad.mit.edu	37	chr6	170887973	170887973	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaatattctcttggcaccaCaggggcaatctggaatatcc	8	12	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170887973	G	G	170887973	3	3	107	1	0	0	0	0	1	0	0	0	11713	478	17	4	194	4	PDCD2	6	170887973	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1262762	170887973	227094	407	105006											
PRKAR1B	5575	broad.mit.edu	37	chr7	720141	720141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagggagctcacaggtgaCagccacgtgccgaggcctgg	15	13	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	720141	A	A	720141	1	1	107	0	1	0	0	0	0	0	0	0	12610	493	17	3		3	PRKAR1B	7	720141	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08		720141	158418522	408	105007											
MIOS	54468	broad.mit.edu	37	chr7	7613232	7613232	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtggtcgtcatttatatGaatgtacggaagaagaaaat	10	4	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7613232	C	C	7613232	3	2	107	1	0	0	0	0	1	0	0	0	9682	1291	45	4	1128	4	MIOS	7	7613232	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	6893091	7613232	151525431	409	105008											
ANKMY2	57037	broad.mit.edu	37	chr7	16664555	16664555	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcaaagtgggttttttttCcacaagggaaattttgggta	11	4	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16664555	T	T	16664555	1	4	107	0	1	0	0	0	0	0	0	0	635	870	30	4		4	ANKMY2	7	16664555	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	9051323	16664555	142474108	410	105009											
HDAC9	9734	broad.mit.edu	37	chr7	18868768	18868768	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatctgaccattgaaaaccTgtcttgttttcacagaatgg	7	8	3	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18868768	G	G	18868768	1	3	107	0	1	0	0	0	0	0	0	0	7081	1595	55	5		5	HDAC9	7	18868768	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	2204213	18868768	140269895	411	105010											
MACC1	346389	broad.mit.edu	37	chr7	20193792	20193792	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtctgcaacttttcactattGaattacacaaacagaagtct	5	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20193792	C	C	20193792	1	2	107	0	1	0	0	0	0	0	0	0	9231	1305	45	4		4	MACC1	7	20193792	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1325024	20193792	138944871	412	105011											
TRA2A	29896	broad.mit.edu	37	chr7	23556207	23556207	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatggctaaagtccttccctCttccaagaaggtatacatat	6	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23556207	A	A	23556207	1	1	107	0	1	0	0	0	0	0	0	0	16557	928	32	3		3	TRA2A	7	23556207	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3362415	23556207	135582456	413	105012											
HOXA3	3200	broad.mit.edu	37	chr7	27149789	27149789	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgagactctttcatccaGgggaagatttgtttggccac	11	9	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27149789	T	T	27149789	2	4	107	1	0	0	0	0	0	0	0	1	7360	987	35	2		2	HOXA3	7	27149789	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3593582	27149789	131988874	414	105013											
HOXA9	3205	broad.mit.edu	37	chr7	27203115	27203115	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgctttgtgcggggatgGtggaggctagggtgggggtg	23	5	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27203115	T	T	27203115	1	4	107	0	1	0	0	0	0	0	0	0	7365	1276	44	3		3	HOXA9	7	27203115	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	53326	27203115	131935548	415	105014											
TARP	445347	broad.mit.edu	37	chr7	38301990	38301990	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaggtagatctaattcaTgtattatgtttttgcacatc	6	5	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38301990	C	C	38301990	1	2	107	0	1	0	0	0	0	0	0	0	15677	1479	51	5		5	TARP	7	38301990	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	11098875	38301990	120836673	416	105015											
VPS41	27072	broad.mit.edu	37	chr7	38937851	38937851	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttggaagagaatctacaActatactttagaggaccaca	7	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38937851	T	T	38937851	1	4	107	0	1	0	0	0	0	0	0	0	17337	58	2	5		5	VPS41	7	38937851	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	635861	38937851	120200812	417	105016											
GLI3	2737	broad.mit.edu	37	chr7	42088288	42088288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagggctactagataaggCggaagtcctgggtacaaaga	14	7	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42088288	A	A	42088288	3	1	107	1	0	0	0	0	1	0	0	0	6503	768	27	3	4305	3	GLI3	7	42088288	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3150437	42088288	117050375	418	105017											
ADCY1	107	broad.mit.edu	37	chr7	45744158	45744158	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggacatagagaagatcaaGaccatcgggagcacctacat	10	9	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45744158	T	T	45744158	3	4	107	1	0	0	0	0	1	0	0	0	292	933	33	3	2826	3	ADCY1	7	45744158	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3655870	45744158	113394505	419	105018											
IGFBP3	3486	broad.mit.edu	37	chr7	45957004	45957004	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgggctctccacactgccGgcgctgcggtcttcctccga	12	17	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45957004	T	T	45957004	2	4	107	1	0	0	0	0	0	0	0	1	7650	1103	39	1		1	IGFBP3	7	45957004	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	212846	45957004	113181659	420	105019											
TNS3	64759	broad.mit.edu	37	chr7	47317603	47317603	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttggtaaaaagtgggggcCccaccctcacccaacggctg	12	13	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47317603	G	G	47317603	1	3	107	0	1	0	0	0	0	0	0	0	16467	638	22	4		4	TNS3	7	47317603	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	1360599	47317603	111821060	421	105020											
PKD1L1	168507	broad.mit.edu	37	chr7	47897406	47897406	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactccatctgcccagtgcTaacatggttcaaagagagac	9	11	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47897406	A	A	47897406	3	1	107	1	0	0	0	0	1	0	0	0	12059	1522	53	5	4282	5	PKD1L1	7	47897406	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	579803	47897406	111241257	422	105021											
DDC	1644	broad.mit.edu	37	chr7	50544309	50544309	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatttgagattacagtggaAtctcccacttacccggtagt	9	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50544309	G	G	50544309	1	3	107	0	1	0	0	0	0	0	0	0	4358	116	4	5		5	DDC	7	50544309	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2646903	50544309	108594354	423	105022											
EGFR	1956	broad.mit.edu	37	chr7	55238228	55238235	+	Intron	DEL	CTGCCACT	-	-													gtgatcatcacggcctcctcCtgccactgagcctcatgcct							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55238235	-	-	55238228	6	5	107	0	1	1	0	1	0	0	0	0	5007	668	24	0		0	EGFR	7	55238228	Intron	DEL	CTGCCACT	TCGA-44-2657-01A-01D-1105-08	4693919	55238228	103900435	424	105023											
FKBP6	8468	broad.mit.edu	37	chr7	72756806	72756806	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgtatttccctctccaGctgttacagggactatgtgg	11	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72756806	C	C	72756806	5	2	107	1	0	0	0	0	0	0	1	0	5969	985	34	4	969	4	FKBP6	7	72756806	Splice_Site	SNP	G	TCGA-44-2657-01A-01D-1105-08	17518578	72756806	86381857	425	105024											
HIP1	3092	broad.mit.edu	37	chr7	75189162	75189162	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaggtgctgctgctcggCcagatctgcttccagctcgc	12	16	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75189162	T	T	75189162	3	4	107	1	0	0	0	0	1	0	0	0	7181	739	26	4	1936	4	HIP1	7	75189162	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2432356	75189162	83949501	426	105025											
CCDC146	57639	broad.mit.edu	37	chr7	76891577	76891577	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctcttgaaagtgtcctggGatgcacttaggcaaactcaa	10	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76891577	A	A	76891577	3	1	107	1	0	0	0	0	1	0	0	0	2806	1174	41	4	1156	4	CCDC146	7	76891577	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1702415	76891577	82247086	427	105026											
HGF	3082	broad.mit.edu	37	chr7	81335060	81335060	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtactaacaaaatcatccagGacagcaggcctgaaaacaca	7	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81335060	T	T	81335060	2	4	107	1	0	0	0	0	0	0	0	1	7152	1161	41	3		3	HGF	7	81335060	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	4443483	81335060	77803603	428	105027											
ABCB4	5244	broad.mit.edu	37	chr7	87046857	87046857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaaaagcacaaagcaaCtgtagttttaagctccaaat	7	7	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87046857	A	A	87046857	1	1	107	0	1	0	0	0	0	0	0	0	43	580	20	3		3	ABCB4	7	87046857	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5711797	87046857	72091806	429	105028											
ABCB1	5243	broad.mit.edu	37	chr7	87144598	87144598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggagctggaccactgtGctcttcccacagccactgct	9	16	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87144598	T	T	87144598	3	4	107	1	0	0	0	0	1	0	0	0	40	1310	46	3	627	3	ABCB1	7	87144598	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	97741	87144598	71994065	430	105029											
ABCB1	5243	broad.mit.edu	37	chr7	87179275	87179275	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatgttttcagctatcgtGgtggcaaacaatacaggttc	10	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87179275	T	T	87179275	2	4	107	1	0	0	0	0	0	0	0	1	40	1335	47	2		2	ABCB1	7	87179275	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	34677	87179275	71959388	431	105030											
ABCB1	5243	broad.mit.edu	37	chr7	87179931	87179931	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttaagagattactaggttaCaataactacttttagtgata	6	4	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87179931	G	G	87179931	1	3	107	0	1	0	0	0	0	0	0	0	40	493	17	4		4	ABCB1	7	87179931	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	656	87179931	71958732	432	105031											
CCDC132	55610	broad.mit.edu	37	chr7	92979091	92979091	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatatatagtgttttattttCagatatgatatatactggaa	6	2	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92979091	T	T	92979091	1	4	107	0	1	0	0	0	0	0	0	0	2793	841	29	4		4	CCDC132	7	92979091	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5799160	92979091	66159572	433	105032											
COL1A2	1278	broad.mit.edu	37	chr7	94035084	94035084	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaatgcctattaatttTtggaaaaaactcaagtatgt	7	4	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94035084	C	C	94035084	1	2	107	0	1	0	0	0	0	0	0	0	3710	1856	64	5		5	COL1A2	7	94035084	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	1055993	94035084	65103579	434	105033											
PON3	5446	broad.mit.edu	37	chr7	95001637	95001637	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaaagtttggcatgcctGgatattttaatcccttttaa	8	8	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95001637	A	A	95001637	3	1	107	1	0	0	0	0	1	0	0	0	12345	1348	47	4	873	4	PON3	7	95001637	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	966553	95001637	64137026	435	105034											
SLC25A13	10165	broad.mit.edu	37	chr7	95849090	95849090	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccctcctcctctataatctGacagatctatcaattctcaa	2	14	5	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95849090	A	A	95849090	1	1	107	0	1	0	0	0	0	0	0	0	14589	1305	45	4		4	SLC25A13	7	95849090	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	847453	95849090	63289573	436	105035											
TAC1	6863	broad.mit.edu	37	chr7	97369240	97369240	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaagacgttaataaactaCctaacattatttattcagct	4	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97369240	T	T	97369240	1	4	107	0	1	0	0	0	0	0	0	0	15617	522	18	4		4	TAC1	7	97369240	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	1520150	97369240	61769423	437	105036											
TRRAP	8295	broad.mit.edu	37	chr7	98497181	98497181	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttataagaaaattggcatCtggggccaaaagatgtgtat	10	5	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98497181	T	T	98497181	1	4	107	0	1	0	0	0	0	0	0	0	16726	928	32	4		4	TRRAP	7	98497181	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1127941	98497181	60641482	438	105037											
SLC12A9	56996	broad.mit.edu	37	chr7	100454719	100454719	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttgactcctaggcctggCcccaatggctcctccctgcc	9	19	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100454719	T	T	100454719	2	4	107	1	0	0	0	0	0	0	0	1	14503	726	26	4		4	SLC12A9	7	100454719	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1957538	100454719	58683944	439	105038											
MUC17	140453	broad.mit.edu	37	chr7	100680394	100680395	+	Missense_Mutation	DNP	CA	AC	AC													gtcaccagcacacctgtgacCacttatgctcaagtcagttc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	100680395	AC	AC	100680394	3	1	107	1	0	0	0	0	1	0	0	0	10068	581	21	2	5707	2	MUC17	7	100680394	Missense_Mutation	DNP	CA	TCGA-44-2657-01A-01D-1105-08	225675	100680394	58458269	440	105039											
MUC17	140453	broad.mit.edu	37	chr7	100683336	100683336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatacctgtcagcaccacgcCggtggccagttctgaggcta	11	13	2	1	rs142042551		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100683336	A	A	100683336	3	1	107	1	0	0	0	0	1	0	0	0	10068	652	23	1	8649	1	MUC17	7	100683336	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2942	100683336	58455327	441	105040											
MUC17	140453	broad.mit.edu	37	chr7	100683920	100683920	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caactcctgttgactccaacAgtcctgtggtcacttctact	6	14	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100683920	T	T	100683920	3	4	107	1	0	0	0	0	1	0	0	0	10068	188	7	5	9233	5	MUC17	7	100683920	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	584	100683920	58454743	442	105041											
MUC17	140453	broad.mit.edu	37	chr7	100685523	100685523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagcacacctgtgaccaCttctactcagagcaattcta	6	13	3	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100685523	A	A	100685523	3	1	107	1	0	0	0	0	1	0	0	0	10068	565	20	3	10836	3	MUC17	7	100685523	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1603	100685523	58453140	443	105042											
RABL5	64792	broad.mit.edu	37	chr7	100958530	100958530	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggtcatcttccaggtttGagtgcaccagcttcagcttg	11	11	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100958530	C	C	100958530	4	2	107	1	0	0	0	0	0	1	0	0	13081	1294	45	4	118	4	RABL5	7	100958530	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	273007	100958530	58180133	444	105043											
PMPCB	9512	broad.mit.edu	37	chr7	102938949	102938949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatagatttggttttaaaaGcaacatttaatatcagatta	5	3	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102938949	T	T	102938949	1	4	107	0	1	0	0	0	0	0	0	0	12236	986	34	3		3	PMPCB	7	102938949	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1980419	102938949	56199714	445	105044											
LHFPL3	375612	broad.mit.edu	37	chr7	104309228	104309228	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tactcctaaggaagatgattCctctgctagtaactcccagt	7	11	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104309228	T	T	104309228	1	4	107	0	1	0	0	0	0	0	0	0	8838	870	30	4		4	LHFPL3	7	104309228	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1370279	104309228	54829435	446	105045											
LHFPL3	375612	broad.mit.edu	37	chr7	104309440	104309440	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactcaggaacgggaacggtCgaggacaggaagtgagtcat	15	7	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104309440	T	T	104309440	1	4	107	0	1	0	0	0	0	0	0	0	8838	899	31	4		4	LHFPL3	7	104309440	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	212	104309440	54829223	447	105046											
PIK3CG	5294	broad.mit.edu	37	chr7	106509707	106509707	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgatccacttaaccctctCacagcagaggacaaagaatt	6	12	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106509707	T	T	106509707	2	4	107	1	0	0	0	0	0	0	0	1	12011	813	29	4		4	PIK3CG	7	106509707	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	2200267	106509707	52628956	448	105047											
LAMB1	3912	broad.mit.edu	37	chr7	107615893	107615893	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcaccaggttaaaatcagGaggaaactcaatgtatcttt	8	7	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107615893	A	A	107615893	1	1	107	0	1	0	0	0	0	0	0	0	8682	1189	41	4		4	LAMB1	7	107615893	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1106186	107615893	51522770	449	105048											
LAMB4	22798	broad.mit.edu	37	chr7	107746545	107746545	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaagggactcttcttgactGatatacacttaatatactat	5	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107746545	T	T	107746545	1	4	107	0	1	0	0	0	0	0	0	0	8685	1305	45	3		3	LAMB4	7	107746545	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	130652	107746545	51392118	450	105049											
MET	4233	broad.mit.edu	37	chr7	116340082	116340082	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaaagaaggaagtgtttaAtatacttcaggctgcgtatg	10	6	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116340082	G	G	116340082	3	3	107	1	0	0	0	0	1	0	0	0	9578	101	4	5	946	5	MET	7	116340082	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	8593537	116340082	42798581	451	105050											
TSPAN12	23554	broad.mit.edu	37	chr7	120450650	120450650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataaaaagcaaaatatcaaCagctgtagctcacacacaga	6	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120450650	A	A	120450650	1	1	107	0	1	0	0	0	0	0	0	0	16761	493	17	3		3	TSPAN12	7	120450650	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	4110568	120450650	38688013	452	105051											
ASB15	142685	broad.mit.edu	37	chr7	123254559	123254559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaattatatgcaggaatGgatactaatgatgaccctga	8	6	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123254559	T	T	123254559	3	4	107	1	0	0	0	0	1	0	0	0	1023	1348	47	2	5	2	ASB15	7	123254559	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2803909	123254559	35884104	453	105052											
CCDC136	64753	broad.mit.edu	37	chr7	128454628	128454628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagggctgagtttggttgCgtggtcagccaactggttgc	16	8	1	1	rs146608527	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128454628	A	A	128454628	1	1	107	0	1	0	0	0	0	0	0	0	2796	783	27	3		3	CCDC136	7	128454628	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5200069	128454628	30684035	454	105053											
FLNC	2318	broad.mit.edu	37	chr7	128477288	128477288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaggccatgcagcaggccGacgactggcttggggtgccc	18	12	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128477288	T	T	128477288	3	4	107	1	0	0	0	0	1	0	0	0	5993	1058	37	3	686	3	FLNC	7	128477288	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	22660	128477288	30661375	455	105054											
PLXNA4	91584	broad.mit.edu	37	chr7	131872244	131872244	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttacctgtggaagagacaGggctgctttccaaacatcac	10	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131872244	T	T	131872244	2	4	107	1	0	0	0	0	0	0	0	1	12217	987	35	2		2	PLXNA4	7	131872244	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3394956	131872244	27266419	456	105055											
MGAM	8972	broad.mit.edu	37	chr7	141785733	141785733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgatcaatcgcatgaaggCtgatgggatgcgggtcatcc	13	9	3	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141785733	A	A	141785733	1	1	107	0	1	0	0	0	0	0	0	0	9634	812	28	3		3	MGAM	7	141785733	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	9913489	141785733	17352930	457	105056											
TRPV5	56302	broad.mit.edu	37	chr7	142622549	142622549	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagagcgtggcatcgtccctGagtagcatggcttcgtttcc	12	12	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142622549	T	T	142622549	1	4	107	0	1	0	0	0	0	0	0	0	16724	1305	45	3		3	TRPV5	7	142622549	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	836816	142622549	16516114	458	105057											
KEL	3792	broad.mit.edu	37	chr7	142659359	142659359	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgattcggaggactgGggtccaggaaacaccccccg	15	12	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142659359	T	T	142659359	1	4	107	0	1	0	0	0	0	0	0	0	8212	1247	43	2		2	KEL	7	142659359	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	36810	142659359	16479304	459	105058											
CNTNAP2	26047	broad.mit.edu	37	chr7	146818215	146818215	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagcatgcagcacttccGtaccaatggagagtttgact	11	10	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146818215	T	T	146818215	3	4	107	1	0	0	0	0	1	0	0	0	3679	1145	40	3	921	3	CNTNAP2	7	146818215	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4158856	146818215	12320448	460	105059											
MLL3	58508	broad.mit.edu	37	chr7	151874497	151874497	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctagaccatcagaagGctgggtggttatctgtaaat	10	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151874497	C	C	151874497	3	2	107	1	0	0	0	0	1	0	0	0	9715	1203	42	4	6782	4	MLL3	7	151874497	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5056282	151874497	7264166	461	105060											
MLL3	58508	broad.mit.edu	37	chr7	151960177	151960177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgataccctttgtcacacGtatcacacactagcatcttg	5	12	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151960177	A	A	151960177	3	1	107	1	0	0	0	0	1	0	0	0	9715	1145	40	4	13716	4	MLL3	7	151960177	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	85680	151960177	7178486	462	105061											
CSMD1	64478	broad.mit.edu	37	chr8	2855596	2855596	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactgggctcgagacacgcCctgcagcaaatagcccgtgt	11	14	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2855596	T	T	2855596	3	4	107	1	0	0	0	0	1	0	0	0	3978	623	22	4	2448	4	CSMD1	8	2855596	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08		2855596	143508426	463	105062											
SOX7	83595	broad.mit.edu	37	chr8	10683036	10683036	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgccacctagtggctgaagAcaacaaccgcatgcacaaat	8	13	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10683036	C	C	10683036	1	2	107	0	1	0	0	0	0	0	0	0	15070	290	10	5		5	SOX7	8	10683036	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	7827440	10683036	135680986	464	105063											
VPS37A	137492	broad.mit.edu	37	chr8	17125803	17125803	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcctcaggaaaaaccagtGatcagtgtttatccaccaat	6	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17125803	C	C	17125803	2	2	107	1	0	0	0	0	0	0	0	1	17332	1277	45	4		4	VPS37A	8	17125803	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	6442767	17125803	129238219	465	105064											
AGPAT6	137964	broad.mit.edu	37	chr8	41456966	41456966	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggctttttgagtaagaagAataactaaacgtctactttt	8	5	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41456966	C	C	41456966	1	2	107	0	1	0	0	0	0	0	0	0	391	261	9	5		5	AGPAT6	8	41456966	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	24331163	41456966	104907056	466	105065											
EFCAB1	79645	broad.mit.edu	37	chr8	49647602	49647602	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttagcacggggtgggacCcaggctcggtccaggagcct	15	13	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49647602	G	G	49647602	1	3	107	0	1	0	0	0	0	0	0	0	4973	638	22	4		4	EFCAB1	8	49647602	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	8190636	49647602	96716420	467	105066											
CLVS1	157807	broad.mit.edu	37	chr8	62212572	62212572	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcagggacatgatcatcacCaggcctgacattggattttt	10	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62212572	G	G	62212572	2	3	107	1	0	0	0	0	0	0	0	1	3603	581	21	4		4	CLVS1	8	62212572	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	12564970	62212572	84151450	468	105067											
NKAIN3	286183	broad.mit.edu	37	chr8	63777274	63777274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtttcagcctccagtactGgggatttgccaaaagcaaaa	10	10	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63777274	T	T	63777274	1	4	107	0	1	0	0	0	0	0	0	0	10532	1363	47	2		2	NKAIN3	8	63777274	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1564702	63777274	82586748	469	105068											
C8orf34	116328	broad.mit.edu	37	chr8	69434011	69434011	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaagccatctaagacaGcatattcttttcttctcttc	4	10	4	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69434011	A	A	69434011	1	1	107	0	1	0	0	0	0	0	0	0	2448	986	34	4		4	C8orf34	8	69434011	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5656737	69434011	76930011	470	105069											
HNF4G	3174	broad.mit.edu	37	chr8	76452093	76452093	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcttaagtcactcagttaCagttaactttggattagcac	7	9	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76452093	T	T	76452093	1	4	107	0	1	0	0	0	0	0	0	0	7321	493	17	4		4	HNF4G	8	76452093	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	7018082	76452093	69911929	471	105070											
ZFHX4	79776	broad.mit.edu	37	chr8	77618316	77618316	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctggaggcccatatgaagGagaaacaccctgagccgggt	13	12	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77618316	T	T	77618316	4	4	107	1	0	0	0	0	0	1	0	0	17761	1175	41	3	1995	3	ZFHX4	8	77618316	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1166223	77618316	68745706	472	105071											
ZFHX4	79776	broad.mit.edu	37	chr8	77690535	77690535	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccaaggtcaagttgaatcTggtacaacatgtccgttcgg	10	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77690535	A	A	77690535	3	1	107	1	0	0	0	0	1	0	0	0	17761	1580	55	5	3195	5	ZFHX4	8	77690535	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	72219	77690535	68673487	473	105072											
ZFHX4	79776	broad.mit.edu	37	chr8	77765635	77765635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaagtgaagaacagatcCaggaaatggcagagaaatct	10	8	1	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77765635	A	A	77765635	3	1	107	1	0	0	0	0	1	0	0	0	17761	595	21	2	6512	2	ZFHX4	8	77765635	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	75100	77765635	68598387	474	105073											
RUNX1T1	862	broad.mit.edu	37	chr8	92972729	92972729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttcactcgctttacggCcacaattccagcaactctaa	6	13	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92972729	A	A	92972729	3	1	107	1	0	0	0	0	1	0	0	0	13858	739	26	3	262	3	RUNX1T1	8	92972729	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	15207094	92972729	53391293	475	105074											
RUNX1T1	862	broad.mit.edu	37	chr8	92998367	92998367	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttacctagtgcaactgggtCtgggttgacgggactctgct	14	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92998367	G	G	92998367	3	3	107	1	0	0	0	0	1	0	0	0	13858	913	32	4	566	4	RUNX1T1	8	92998367	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	25638	92998367	53365655	476	105075											
TMEM67	91147	broad.mit.edu	37	chr8	94808049	94808049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctttcccaaaaaaaaaCaaaaacgaaaacaaaaaaca	1	11	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94808049	A	A	94808049	1	1	107	0	1	0	0	0	0	0	0	0	16319	493	17	3		3	TMEM67	8	94808049	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1809682	94808049	51555973	477	105076											
MTERFD1	51001	broad.mit.edu	37	chr8	97256256	97256256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacatctttgggattctgGtgatcatatgttgaatttcg	9	5	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97256256	T	T	97256256	3	4	107	1	0	0	0	0	1	0	0	0	10013	1261	44	3	311	3	MTERFD1	8	97256256	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2448207	97256256	49107766	478	105077											
OSR2	116039	broad.mit.edu	37	chr8	99963021	99963021	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttaaaaacagtggctggttCgtgttatcattactgctttg	9	6	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99963021	T	T	99963021	1	4	107	0	1	0	0	0	0	0	0	0	11388	899	31	4		4	OSR2	8	99963021	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2706765	99963021	46401001	479	105078											
ODF1	4956	broad.mit.edu	37	chr8	103573108	103573108	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgtaggaagatgatttTgtaaagtgcgcataggaacc	11	6	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103573108	C	C	103573108	3	2	107	1	0	0	0	0	1	0	0	0	10921	1821	63	5	755	5	ODF1	8	103573108	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	3610087	103573108	42790914	480	105079											
DPYS	1807	broad.mit.edu	37	chr8	105436574	105436574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattttggctgcatttgtgCtggtaactgccacaaatctg	9	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105436574	A	A	105436574	3	1	107	1	0	0	0	0	1	0	0	0	4786	797	28	3	435	3	DPYS	8	105436574	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1863466	105436574	40927448	481	105080											
LRP12	29967	broad.mit.edu	37	chr8	105502825	105502825	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttaaactaaaactaGtttaactgtaaagttacaaa	3	5	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105502825	C	C	105502825	1	2	107	0	1	0	0	0	0	0	0	0	9041	1044	36	4		4	LRP12	8	105502825	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	66251	105502825	40861197	482	105081											
CSMD3	114788	broad.mit.edu	37	chr8	113331980	113331980	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttcctcttttcactcctTctcccttcttaaaaattcta	0	15	5	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113331980	C	C	113331980	1	2	107	0	1	0	0	0	0	0	0	0	3980	1798	62	5		5	CSMD3	8	113331980	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	7829155	113331980	33032042	483	105082											
CSMD3	114788	broad.mit.edu	37	chr8	113565052	113565052	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaatactgattttcttgTttctttaaagtatacatttg	5	4	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113565052	A	A	113565052	1	1	107	0	1	0	0	0	0	0	0	0	3980	1740	60	5		5	CSMD3	8	113565052	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	233072	113565052	32798970	484	105083											
TAF2	6873	broad.mit.edu	37	chr8	120801181	120801181	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaagtttacatactgaaacGaatatgtactaaacaaagta	6	5	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120801181	A	A	120801181	1	1	107	0	1	0	0	0	0	0	0	0	15643	1073	37	4		4	TAF2	8	120801181	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	7236129	120801181	25562841	485	105084											
DERL1	79139	broad.mit.edu	37	chr8	124033899	124033899	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaatctagcattattcccActatacttaaaccttcctat	1	12	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124033899	T	T	124033899	1	4	107	0	1	0	0	0	0	0	0	0	4486	174	6	5		5	DERL1	8	124033899	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	3232718	124033899	22330123	486	105085											
FAM83A	84985	broad.mit.edu	37	chr8	124206200	124206200	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaacataaacatccagccTaaagcccaaatgtatctcta	6	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124206200	A	A	124206200	1	1	107	0	1	0	0	0	0	0	0	0	5686	1537	53	5		5	FAM83A	8	124206200	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	172301	124206200	22157822	487	105086											
FER1L6	654463	broad.mit.edu	37	chr8	124992872	124992872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcctctcaggacgggcaCaggaatctaaattttccaag	8	10	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124992872	A	A	124992872	3	1	107	1	0	0	0	0	1	0	0	0	5872	479	17	3	1269	3	FER1L6	8	124992872	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	786672	124992872	21371150	488	105087											
LRRC6	23639	broad.mit.edu	37	chr8	133673705	133673706	+	Splice_Site	DNP	CC	AT	AT													gaactaagtactgaaacttaCcaattttcccaataagatta							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	133673706	AT	AT	133673705	5	1	107	1	0	0	0	0	0	0	1	0	9103	521	18	3	1265	3	LRRC6	8	133673705	Splice_Site	DNP	CC	TCGA-44-2657-01A-01D-1105-08	8680833	133673705	12690317	489	105088											
LRRC6	23639	broad.mit.edu	37	chr8	133687823	133687823	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacccctgctcctcagcgCgtccccgtcggaattcagga	9	17	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133687823	T	T	133687823	1	4	107	0	1	0	0	0	0	0	0	0	9103	783	27	4		4	LRRC6	8	133687823	5'Flank	SNP	C	TCGA-44-2657-01A-01D-1105-08	14118	133687823	12676199	490	105089											
PHF20L1	51105	broad.mit.edu	37	chr8	133806861	133806861	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttctgtttgctagttttGccagctatgtaatgacatat	7	6	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133806861	A	A	133806861	1	1	107	0	1	0	0	0	0	0	0	0	11927	1334	46	4		4	PHF20L1	8	133806861	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	119038	133806861	12557161	491	105090											
TG	7038	broad.mit.edu	37	chr8	133906105	133906105	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttcctccgctcttcccgCcccgggaggctttcgcggag	12	18	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133906105	T	T	133906105	3	4	107	1	0	0	0	0	1	0	0	0	15936	739	26	4	2974	4	TG	8	133906105	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	99244	133906105	12457917	492	105091											
FAM135B	51059	broad.mit.edu	37	chr8	139210035	139210035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggttcagggaaggaaGcagaccccatcctgagtaaa	13	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139210035	T	T	139210035	1	4	107	0	1	0	0	0	0	0	0	0	5495	986	34	3		3	FAM135B	8	139210035	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5303930	139210035	7153987	493	105092											
FAM135B	51059	broad.mit.edu	37	chr8	139268931	139268931	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataatttccatgacactcaCtgctgttcactgtccgtaaa	5	11	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139268931	A	A	139268931	5	1	107	1	0	0	0	0	0	0	1	0	5495	579	20	3	3915	3	FAM135B	8	139268931	Splice_Site	SNP	C	TCGA-44-2657-01A-01D-1105-08	58896	139268931	7095091	494	105093											
LY6D	8581	broad.mit.edu	37	chr8	143867039	143867039	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagaagcgagagctggcCgggcagaccacagaatgctt	14	10	0	4	rs138562115		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143867039	T	T	143867039	2	4	107	1	0	0	0	0	0	0	0	1	9178	639	23	4		4	LY6D	8	143867039	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	4598108	143867039	2496983	495	105094											
SHARPIN	81858	broad.mit.edu	37	chr8	145153921	145153921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagagagacagttgttGcttccctgctctttccaatg	12	9	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145153921	T	T	145153921	1	4	107	0	1	0	0	0	0	0	0	0	14380	1334	46	3		3	SHARPIN	8	145153921	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1286882	145153921	1210101	496	105095											
CPSF1	29894	broad.mit.edu	37	chr8	145619310	145619310	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccggcccaggcagagggGgtggaggaagcactcacctt	16	13	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145619310	A	A	145619310	1	1	107	0	1	0	0	0	0	0	0	0	3856	1247	43	4		4	CPSF1	8	145619310	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	465389	145619310	744712	497	105096											
KIAA1432	57589	broad.mit.edu	37	chr9	5768969	5768969	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttgtgtttccacttacaGatggagcaaagacagtgact	9	8	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5768969	C	C	5768969	5	2	107	1	0	0	0	0	0	0	1	0	8303	956	33	4	2982	4	KIAA1432	9	5768969	Splice_Site	SNP	G	TCGA-44-2657-01A-01D-1105-08		5768969	135444462	498	105097											
PSIP1	11168	broad.mit.edu	37	chr9	15486099	15486099	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaactgaatactgaaTaaattattccaggaatgaaa	6	4	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15486099	G	G	15486099	1	3	107	0	1	0	0	0	0	0	0	0	12769	1421	49	5		5	PSIP1	9	15486099	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	9717130	15486099	125727332	499	105098											
SLC24A2	25769	broad.mit.edu	37	chr9	19597236	19597236	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcattcttaccttcttcagTcattgtgtcataatatttta	3	8	6	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19597236	C	C	19597236	3	2	107	1	0	0	0	0	1	0	0	0	14580	1667	58	5	893	5	SLC24A2	9	19597236	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	4111137	19597236	121616195	500	105099											
MTAP	4507	broad.mit.edu	37	chr9	21929856	21929856	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggccaaaagaaaaagatgGattggatgtaggctctttcc	11	6	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21929856	T	T	21929856	1	4	107	0	1	0	0	0	0	0	0	0	10005	1189	41	3		3	MTAP	9	21929856	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2332620	21929856	119283575	501	105100											
TAF1L	138474	broad.mit.edu	37	chr9	32631299	32631299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacaacctttgcattgactgGagtgtggaaagggtgtgtat	13	5	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32631299	T	T	32631299	3	4	107	1	0	0	0	0	1	0	0	0	15642	1174	41	3	1205	3	TAF1L	9	32631299	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	10701443	32631299	108582132	502	105101											
TAF1L	138474	broad.mit.edu	37	chr9	32633637	32633637	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatggggacctggctgagaGagtgcaccaaatgagtactt	14	7	0	3	rs34334113		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32633637	C	C	32633637	2	2	107	1	0	0	0	0	0	0	0	1	15642	929	33	4		4	TAF1L	9	32633637	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	2338	32633637	108579794	503	105102											
FAM75A6	389730	broad.mit.edu	37	chr9	43624985	43624985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagactggggcttgaaaCttctgtttgtgctgatttac	10	9	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43624985	A	A	43624985	3	1	107	1	0	0	0	0	1	0	0	0	5674	564	20	3	333	3	FAM75A6	9	43624985	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	10991348	43624985	97588446	504	105103											
TMEM2	23670	broad.mit.edu	37	chr9	74305045	74305045	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttaaatactcttcaatgcGactgacatcagcaagaggaa	7	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74305045	A	A	74305045	3	1	107	1	0	0	0	0	1	0	0	0	16244	1058	37	4	349	4	TMEM2	9	74305045	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	30680060	74305045	66908386	505	105104											
TMC1	117531	broad.mit.edu	37	chr9	75355150	75355150	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatttttatagttgtctggTttatggcatattgcctctaa	8	5	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75355150	A	A	75355150	1	1	107	0	1	0	0	0	0	0	0	0	16107	1740	60	5		5	TMC1	9	75355150	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	1050105	75355150	65858281	506	105105											
SEMA4D	10507	broad.mit.edu	37	chr9	92087515	92087515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagcattcaaagatgtccTgcaagagctttgggcctaat	9	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92087515	C	C	92087515	1	2	107	0	1	0	0	0	0	0	0	0	14147	1595	55	5		5	SEMA4D	9	92087515	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	16732365	92087515	49125916	507	105106											
ASPN	54829	broad.mit.edu	37	chr9	95221790	95221790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaacacctcatgcaacctGgagagtcattatgtttgaat	7	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95221790	T	T	95221790	1	4	107	0	1	0	0	0	0	0	0	0	1061	1363	47	2		2	ASPN	9	95221790	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	3134275	95221790	45991641	508	105107											
COL15A1	1306	broad.mit.edu	37	chr9	101814853	101814853	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggggtggggatggcagctGagccaaggctgtggggctgt	21	6	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101814853	T	T	101814853	1	4	107	0	1	0	0	0	0	0	0	0	3704	1305	45	3		3	COL15A1	9	101814853	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	6593063	101814853	39398578	509	105108											
PTPN3	5774	broad.mit.edu	37	chr9	112168699	112168699	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagcaggcgcagcttggcTaggacagcttccctatggct	14	11	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112168699	A	A	112168699	1	1	107	0	1	0	0	0	0	0	0	0	12897	1537	53	5		5	PTPN3	9	112168699	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	10353846	112168699	29044732	510	105109											
SVEP1	79987	broad.mit.edu	37	chr9	113148345	113148345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcacaaaaggaacagggCatggatttgctgtcaaaaag	11	6	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113148345	A	A	113148345	3	1	107	1	0	0	0	0	1	0	0	0	15538	710	25	3	669	3	SVEP1	9	113148345	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	979646	113148345	28065086	511	105110											
MUSK	4593	broad.mit.edu	37	chr9	113510054	113510054	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagttcagtactgccaAggctgcagccaccatcagca	11	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113510054	T	T	113510054	3	4	107	1	0	0	0	0	1	0	0	0	10083	72	3	5	947	5	MUSK	9	113510054	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	361709	113510054	27703377	512	105111											
MUSK	4593	broad.mit.edu	37	chr9	113537923	113537923	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtctcatattatttacAgtaaaaagtttctttcataa	5	5	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113537923	C	C	113537923	1	2	107	0	1	0	0	0	0	0	0	0	10083	203	7	5		5	MUSK	9	113537923	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	27869	113537923	27675508	513	105112											
ZNF618	114991	broad.mit.edu	37	chr9	116811997	116811997	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccggcccacaaggtggcCatgatcctggacccgcagca	11	17	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116811997	T	T	116811997	2	4	107	1	0	0	0	0	0	0	0	1	18169	581	21	4		4	ZNF618	9	116811997	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	3274074	116811997	24401434	514	105113											
AKNA	80709	broad.mit.edu	37	chr9	117104101	117104101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccttcccctatgagagCtggacaggccctaccctgtg	10	16	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117104101	A	A	117104101	1	1	107	0	1	0	0	0	0	0	0	0	463	812	28	3		3	AKNA	9	117104101	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	292104	117104101	24109330	515	105114											
ADAMTS13	11093	broad.mit.edu	37	chr9	136319481	136319481	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggagaggggcctgcgtggGgcagtactgtctctggggag	21	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136319481	A	A	136319481	1	1	107	0	1	0	0	0	0	0	0	0	258	1247	43	4		4	ADAMTS13	9	136319481	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	19215380	136319481	4893950	516	105115											
FCN2	2220	broad.mit.edu	37	chr9	137777068	137777068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtcctgcagccattccCcgggttcccttcccaggccc	8	20	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137777068	A	A	137777068	1	1	107	0	1	0	0	0	0	0	0	0	5849	638	22	2		2	FCN2	9	137777068	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1457587	137777068	3436363	517	105116											
NOTCH1	4851	broad.mit.edu	37	chr9	139413994	139413994	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggacaatcgtcgatattttCctcacagttctggccggtga	10	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139413994	G	G	139413994	3	3	107	1	0	0	0	0	1	0	0	0	10642	864	30	4	7021	4	NOTCH1	9	139413994	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1636926	139413994	1799437	518	105117											
GRIN1	2902	broad.mit.edu	37	chr9	140058266	140058266	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggatcttcctgattttcatCgagattgcctacaagcggca	10	10	2	2	rs146086141	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140058266	A	A	140058266	2	1	107	1	0	0	0	0	0	0	0	1	6844	874	31	3		3	GRIN1	9	140058266	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	644272	140058266	1155165	519	105118											
TUBAL3	79861	broad.mit.edu	37	chr10	5446699	5446699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgctgtgggaaaagggcCaaatatgattagtaaaattt	11	3	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5446699	A	A	5446699	1	1	107	0	1	0	0	0	0	0	0	0	16877	609	21	2		2	TUBAL3	10	5446699	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08		5446699	130088048	520	105119											
PFKFB3	5209	broad.mit.edu	37	chr10	6268204	6268204	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacgcaatagtgtcacccCgctagccagccccgaaccca	9	17	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6268204	T	T	6268204	3	4	107	1	0	0	0	0	1	0	0	0	11857	652	23	4	1465	4	PFKFB3	10	6268204	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	821505	6268204	129266543	521	105120											
PRKCQ	5588	broad.mit.edu	37	chr10	6527124	6527124	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacagctacctctttttccCggtgtcggtaaacatggcgg	12	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6527124	T	T	6527124	2	4	107	1	0	0	0	0	0	0	0	1	12621	639	23	4		4	PRKCQ	10	6527124	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	258920	6527124	129007623	522	105121											
GATA3	2625	broad.mit.edu	37	chr10	8115676	8115676	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaaaaaagtaaaaaaaAaaaaaaaaaattgatctttg	5	3	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8115676	G	G	8115676	1	3	107	0	1	0	0	0	0	0	0	0	6317	29	1	5		5	GATA3	10	8115676	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1588552	8115676	127419071	523	105122											
USP6NL	9712	broad.mit.edu	37	chr10	11531201	11531201	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagctgtgatctggctcatCccctgacaatacccgacttc	7	14	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11531201	A	A	11531201	2	1	107	1	0	0	0	0	0	0	0	1	17214	842	30	3		3	USP6NL	10	11531201	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	3415525	11531201	124003546	524	105123											
ITGA8	8516	broad.mit.edu	37	chr10	15760691	15760692	+	Intron	DNP	GG	TT	TT													gagcagcacaccaagacagcGggaagtcgcctctgggatgg							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15760692	TT	TT	15760691	1	4	107	0	1	0	0	0	0	0	0	0	7952	1131	39	1		1	ITGA8	10	15760691	Intron	DNP	GG	TCGA-44-2657-01A-01D-1105-08	4229490	15760691	119774056	525	105124											
ZEB1	6935	broad.mit.edu	37	chr10	31650035	31650035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaattacaagaacgatctgAtcttacagtcaaggaaaaag	7	7	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31650035	G	G	31650035	1	3	107	0	1	0	0	0	0	0	0	0	17749	348	12	5		5	ZEB1	10	31650035	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	15889344	31650035	103884712	526	105125											
ANKRD30A	91074	broad.mit.edu	37	chr10	37415025	37415025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgggggctggggggcctgGggaagaagggagcaggtgga	25	5	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37415025	T	T	37415025	1	4	107	0	1	0	0	0	0	0	0	0	658	1247	43	2		2	ANKRD30A	10	37415025	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5764990	37415025	98119722	527	105126											
CXCL12	6387	broad.mit.edu	37	chr10	44873999	44873999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttaaggccccctccccCacgtctttgccctttcatct	6	17	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44873999	A	A	44873999	1	1	107	0	1	0	0	0	0	0	0	0	4113	609	21	2		2	CXCL12	10	44873999	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	7458974	44873999	90660748	528	105127											
ANUBL1	93550	broad.mit.edu	37	chr10	46119970	46119970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctctttgaaaattcaaCcggatgcataattatgtaat	5	6	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46119970	A	A	46119970	1	1	107	0	1	0	0	0	0	0	0	0	713	522	18	3		3	ANUBL1	10	46119970	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1245971	46119970	89414777	529	105128											
MYPN	84665	broad.mit.edu	37	chr10	69881917	69881917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcgtgaagcggagcaggCtgccagtgaggcggctggtg	21	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69881917	A	A	69881917	3	1	107	1	0	0	0	0	1	0	0	0	10192	797	28	3	724	3	MYPN	10	69881917	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	23761947	69881917	65652830	530	105129											
SUPV3L1	6832	broad.mit.edu	37	chr10	70968563	70968563	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaagctagaaggacacgCggcaccaaagctctagggag	13	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70968563	T	T	70968563	2	4	107	1	0	0	0	0	0	0	0	1	15520	755	27	4		4	SUPV3L1	10	70968563	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1086646	70968563	64566184	531	105130											
CDH23	64072	broad.mit.edu	37	chr10	73437176	73437176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaagcctgttttaaaccaCggtgttccttctctccatcc	5	14	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73437176	T	T	73437176	1	4	107	0	1	0	0	0	0	0	0	0	3138	551	19	4		4	CDH23	10	73437176	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2468613	73437176	62097571	532	105131											
CDH23	64072	broad.mit.edu	37	chr10	73537413	73537413	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctctggccacctgaccaagGacgtgacccactcttttcca	7	17	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73537413	T	T	73537413	1	4	107	0	1	0	0	0	0	0	0	0	3138	1189	41	3		3	CDH23	10	73537413	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	100237	73537413	61997334	533	105132											
CDH23	64072	broad.mit.edu	37	chr10	73574861	73574861	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgctgctggccaccgacctCaacagcctgcccgaggaaga	11	16	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73574861	T	T	73574861	2	4	107	1	0	0	0	0	0	0	0	1	3138	813	29	4		4	CDH23	10	73574861	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	37448	73574861	61959886	534	105133											
KCNMA1	3778	broad.mit.edu	37	chr10	78704598	78704598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttgatgttgagtgacgcCaagatgcattccttgtcctg	11	8	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78704598	A	A	78704598	3	1	107	1	0	0	0	0	1	0	0	0	8143	593	21	2	928	2	KCNMA1	10	78704598	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	5129737	78704598	56830149	535	105134											
POLR3A	11128	broad.mit.edu	37	chr10	79781687	79781687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccatgttgaggggaatgcCcgagagctcactgttaatgt	13	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79781687	A	A	79781687	3	1	107	1	0	0	0	0	1	0	0	0	12323	623	22	2	3293	2	POLR3A	10	79781687	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1077089	79781687	55753060	536	105135											
FAM22A	728118	broad.mit.edu	37	chr10	88994213	88994213	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaaagtggggaccccaGggaactcatcagttcccatc	10	13	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88994213	A	A	88994213	2	1	107	1	0	0	0	0	0	0	0	1	5590	991	35	4		4	FAM22A	10	88994213	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	9212526	88994213	46540534	537	105136											
IFIT1B	439996	broad.mit.edu	37	chr10	91144500	91144500	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaccctatattttaacataGaggtcaccattatccattta	4	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91144500	C	C	91144500	1	2	107	0	1	0	0	0	0	0	0	0	7592	957	33	4		4	IFIT1B	10	91144500	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	2150287	91144500	44390247	538	105137											
CYP26A1	1592	broad.mit.edu	37	chr10	94834513	94834513	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcggatggaggcttttaacGctgtcccctcctcgggactc	13	13	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94834513	C	C	94834513	1	2	107	0	1	0	0	0	0	0	0	0	4188	1102	38	4		4	CYP26A1	10	94834513	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	3690013	94834513	40700234	539	105138											
C10orf12	26148	broad.mit.edu	37	chr10	98741739	98741739	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcgaggatactttttcaatGgtgactgttgtgagctgcca	11	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98741739	C	C	98741739	3	2	107	1	0	0	0	0	1	0	0	0	1600	1348	47	4	594	4	C10orf12	10	98741739	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3907226	98741739	36793008	540	105139											
SLIT1	6585	broad.mit.edu	37	chr10	98807553	98807553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgtggggacagaccacgtCgctgttgcactcgctgttca	12	12	1	1	rs139828471		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98807553	A	A	98807553	3	1	107	1	0	0	0	0	1	0	0	0	14853	884	31	3	3164	3	SLIT1	10	98807553	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	65814	98807553	36727194	541	105140											
NRAP	4892	broad.mit.edu	37	chr10	115373868	115373868	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgtccagaaggacaaatGaggttaggttgccatgcagt	12	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115373868	A	A	115373868	1	1	107	0	1	0	0	0	0	0	0	0	10733	1305	45	4		4	NRAP	10	115373868	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	16566315	115373868	20160879	542	105141											
ABLIM1	3983	broad.mit.edu	37	chr10	116197683	116197683	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcatttcatatggaaataTctgagaagaaagaaaacacc	8	6	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116197683	A	A	116197683	3	1	107	1	0	0	0	0	1	0	0	0	94	1449	50	5	201	5	ABLIM1	10	116197683	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	823815	116197683	19337064	543	105142											
GFRA1	2674	broad.mit.edu	37	chr10	117823850	117823850	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagctatacaagagaacagGaaacagataacttggttttt	8	6	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117823850	C	C	117823850	1	2	107	0	1	0	0	0	0	0	0	0	6411	1189	41	4		4	GFRA1	10	117823850	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	1626167	117823850	17710897	544	105143											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118187472	118187472	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttatagtgaggtgacttTacaagtaaagatcttcaaga	8	4	2	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118187472	C	C	118187472	1	2	107	0	1	0	0	0	0	0	0	0	12247	1769	61	5		5	PNLIPRP3	10	118187472	5'UTR	SNP	T	TCGA-44-2657-01A-01D-1105-08	363622	118187472	17347275	545	105144											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236066	118236066	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagcaaatgctagcaaatAcaagtttctcttccatagtg	6	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118236066	G	G	118236066	1	3	107	0	1	0	0	0	0	0	0	0	12247	406	14	5		5	PNLIPRP3	10	118236066	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	48594	118236066	17298681	546	105145											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118368484	118368484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaaaaaccaaaccaaacCaaaccaaaccaaaacaaaac	1	12	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118368484	A	A	118368484	1	1	107	0	1	0	0	0	0	0	0	0	12245	609	21	2		2	PNLIPRP1	10	118368484	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	132418	118368484	17166263	547	105146											
SLC18A2	6571	broad.mit.edu	37	chr10	119015006	119015006	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagctattcagctctttgtGctccagccgtcccgggtgca	10	13	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119015006	T	T	119015006	2	4	107	1	0	0	0	0	0	0	0	1	14539	1306	46	3		3	SLC18A2	10	119015006	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	646522	119015006	16519741	548	105147											
FAM196A	642938	broad.mit.edu	37	chr10	128973656	128973656	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaccgctgtgggactaGgctggttccccagccccggc	13	16	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128973656	C	C	128973656	3	2	107	1	0	0	0	0	1	0	0	0	5575	1000	35	4	447	4	FAM196A	10	128973656	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	9958650	128973656	6561091	549	105148											
MUC2	4583	broad.mit.edu	37	chr11	1080968	1080968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagacggtggtgctgctggCtgacaagaagaagaatgtga	16	5	0	6			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1080968	A	A	1080968	3	1	107	1	0	0	0	0	1	0	0	0	10069	797	28	3	1390	3	MUC2	11	1080968	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08		1080968	133925548	550	105149											
MUC2	4583	broad.mit.edu	37	chr11	1081158	1081158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccggtgagttgtgccccaGggaggggcccgggcccttcg	18	13	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1081158	T	T	1081158	1	4	107	0	1	0	0	0	0	0	0	0	10069	1015	35	2		2	MUC2	11	1081158	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	190	1081158	133925358	551	105150											
BRSK2	9024	broad.mit.edu	37	chr11	1466162	1466162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtgggctctttccgtcCctcgtccgtactaactccct	7	15	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1466162	A	A	1466162	1	1	107	0	1	0	0	0	0	0	0	0	1533	638	22	2		2	BRSK2	11	1466162	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	385004	1466162	133540354	552	105151											
LSP1	4046	broad.mit.edu	37	chr11	1908758	1908758	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaccgggcatgggaagtatGagaaggtgcttgtggaaggg	18	6	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1908758	T	T	1908758	4	4	107	1	0	0	0	0	0	1	0	0	9150	1291	45	3	1023	3	LSP1	11	1908758	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	442596	1908758	133097758	553	105152											
OR52K2	119774	broad.mit.edu	37	chr11	4470913	4470913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctccatcatggagtcagCagtgctgctggccatggcct	11	13	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4470913	A	A	4470913	3	1	107	1	0	0	0	0	1	0	0	0	11218	710	25	3	346	3	OR52K2	11	4470913	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2562155	4470913	130535603	554	105153											
OR51E1	143503	broad.mit.edu	37	chr11	4674576	4674576	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcggcgtgactctccgCtgcccgtcatcttggccaat	11	15	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4674576	T	T	4674576	2	4	107	1	0	0	0	0	0	0	0	1	11188	796	28	4		4	OR51E1	11	4674576	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	203663	4674576	130331940	555	105154											
HBB	3043	broad.mit.edu	37	chr11	5246739	5246739	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaggcagaatccagatgctCaaggcccttcataatatccc	7	12	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5246739	A	A	5246739	1	1	107	0	1	0	0	0	0	0	0	0	7044	841	29	3		3	HBB	11	5246739	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	572163	5246739	129759777	556	105155											
OR51M1	390059	broad.mit.edu	37	chr11	5411262	5411262	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcaataatctgtatggaCtgatggtggtagttttcact	9	7	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5411262	T	T	5411262	2	4	107	1	0	0	0	0	0	0	0	1	11197	564	20	4		4	OR51M1	11	5411262	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	164523	5411262	129595254	557	105156											
UBQLN3	50613	broad.mit.edu	37	chr11	5529464	5529464	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccccgagacaagatcaGgcaagtttgtgctatgtcca	10	12	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5529464	C	C	5529464	3	2	107	1	0	0	0	0	1	0	0	0	17024	1000	35	4	646	4	UBQLN3	11	5529464	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	118202	5529464	129477052	558	105157											
OR56A3	390083	broad.mit.edu	37	chr11	5969145	5969145	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccaatatgtctgtttccaGactctcctgcgatgatgtca	8	11	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5969145	T	T	5969145	3	4	107	1	0	0	0	0	1	0	0	0	11228	942	33	3	571	3	OR56A3	11	5969145	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	439681	5969145	129037371	559	105158											
OR10A5	144124	broad.mit.edu	37	chr11	6865342	6865342	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatttttttgtttgtttgtTtttgccaccatgcatatatt	5	7	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6865342	A	A	6865342	1	1	107	0	1	0	0	0	0	0	0	0	10987	1856	64	5		5	OR10A5	11	6865342	5'Flank	SNP	T	TCGA-44-2657-01A-01D-1105-08	896197	6865342	128141174	560	105159											
NLRP10	338322	broad.mit.edu	37	chr11	7981815	7981815	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaattggtagtcgttactActcaggaaagcggcaagcct	10	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7981815	G	G	7981815	2	3	107	1	0	0	0	0	0	0	0	1	10567	388	14	5		5	NLRP10	11	7981815	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	1116473	7981815	127024701	561	105160											
RIC3	79608	broad.mit.edu	37	chr11	8190394	8190394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgccgggaagctcagagGgagctggcctgctcttacct	15	13	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8190394	T	T	8190394	1	4	107	0	1	0	0	0	0	0	0	0	13463	1247	43	2		2	RIC3	11	8190394	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	208579	8190394	126816122	562	105161											
TMEM41B	440026	broad.mit.edu	37	chr11	9304927	9304927	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggatgcacctgttaatcCtgagatggtgatgacagcaa	11	7	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9304927	A	A	9304927	1	1	107	0	1	0	0	0	0	0	0	0	16288	696	24	2		2	TMEM41B	11	9304927	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	1114533	9304927	125701589	563	105162											
PTH	5741	broad.mit.edu	37	chr11	13514017	13514017	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcctctccaagacttttttCatggctctcaaccaagacat	5	13	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13514017	T	T	13514017	3	4	107	1	0	0	0	0	1	0	0	0	12863	835	29	4	68	4	PTH	11	13514017	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	4209090	13514017	121492499	564	105163											
PDE3B	5140	broad.mit.edu	37	chr11	14825482	14825483	+	Intron	DNP	CC	AA	AA													attttaacctgttatttttcCcttttagtcaaggatgctat							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	14825483	AA	AA	14825482	1	1	107	0	1	0	0	0	0	0	0	0	11732	638	22	2		2	PDE3B	11	14825482	Intron	DNP	CC	TCGA-44-2657-01A-01D-1105-08	1311465	14825482	120181034	565	105164											
PLEKHA7	144100	broad.mit.edu	37	chr11	16872832	16872832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccgaggaccgcttcttctCggctgtctttgaatggaaaa	10	11	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16872832	A	A	16872832	3	1	107	1	0	0	0	0	1	0	0	0	12156	884	31	3	2827	3	PLEKHA7	11	16872832	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2047350	16872832	118133684	566	105165											
RPS13	6207	broad.mit.edu	37	chr11	17099024	17099025	+	Splice_Site	DNP	CC	AA	AA													gccgactgggacaggcccttCctggggagagaagcagtctc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	17099025	AA	AA	17099024	5	1	107	1	0	0	0	0	0	0	1	0	13734	869	30	3	451	3	RPS13	11	17099024	Splice_Site	DNP	CC	TCGA-44-2657-01A-01D-1105-08	226192	17099024	117907492	567	105166											
ABCC8	6833	broad.mit.edu	37	chr11	17414710	17414710	+	Intron	DEL	G	-	-													agggggcgggtcaggatggtGggaataccacccgcggtggg							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17414710	-	-	17414710	6	5	107	0	1	1	0	1	0	0	0	0	58	1363	47	0		0	ABCC8	11	17414710	Intron	DEL	G	TCGA-44-2657-01A-01D-1105-08	315686	17414710	117591806	568	105167											
IGSF22	283284	broad.mit.edu	37	chr11	18740276	18740276	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcagaatccggatggcCtgagagattatgataataaa	11	6	1	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18740276	A	A	18740276	5	1	107	1	0	0	0	0	0	0	1	0	7670	695	24	2	3348	2	IGSF22	11	18740276	Splice_Site	SNP	C	TCGA-44-2657-01A-01D-1105-08	1325566	18740276	116266240	569	105168											
PTPN5	84867	broad.mit.edu	37	chr11	18763665	18763665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgatctctatgaatgacCtggatagcacatgtctacac	7	10	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18763665	A	A	18763665	1	1	107	0	1	0	0	0	0	0	0	0	12899	696	24	2		2	PTPN5	11	18763665	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	23389	18763665	116242851	570	105169											
PTPN5	84867	broad.mit.edu	37	chr11	18765466	18765467	+	Intron	DNP	CC	AA	AA													gccccttatcctcctgccttCcaggtggccatcctggggag							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18765467	AA	AA	18765466	1	1	107	0	1	0	0	0	0	0	0	0	12899	870	30	3		3	PTPN5	11	18765466	Intron	DNP	CC	TCGA-44-2657-01A-01D-1105-08	1801	18765466	116241050	571	105170											
NAV2	89797	broad.mit.edu	37	chr11	20071618	20071618	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagagtctgttcctctgtcTgctaaagcccagggagaggt	13	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20071618	G	G	20071618	1	3	107	0	1	0	0	0	0	0	0	0	10278	1595	55	5		5	NAV2	11	20071618	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	1306152	20071618	114934898	572	105171											
NAV2	89797	broad.mit.edu	37	chr11	20122721	20122721	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaccataagtccagcaaggtGaggaggtcattctgagtctg	13	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20122721	T	T	20122721	1	4	107	0	1	0	0	0	0	0	0	0	10278	1305	45	3		3	NAV2	11	20122721	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	51103	20122721	114883795	573	105172											
NAT10	55226	broad.mit.edu	37	chr11	34160792	34160792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaagacgctcactgatgagGatgaggctgaccagggaggc	16	8	1	6			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34160792	T	T	34160792	3	4	107	1	0	0	0	0	1	0	0	0	10268	1174	41	3	2348	3	NAT10	11	34160792	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	14038071	34160792	100845724	574	105173											
CAT	847	broad.mit.edu	37	chr11	34478335	34478335	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagcaacatgccacctggcAttgaggccagtcctgacaaa	9	13	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34478335	G	G	34478335	3	3	107	1	0	0	0	0	1	0	0	0	2712	217	8	5	1057	5	CAT	11	34478335	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	317543	34478335	100528181	575	105174											
TTC17	55761	broad.mit.edu	37	chr11	43413371	43413371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctttttcttctcttcagGgtgtacaggagagagttaat	9	6	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43413371	T	T	43413371	3	4	107	1	0	0	0	0	1	0	0	0	16810	1246	43	2	550	2	TTC17	11	43413371	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	8935036	43413371	91593145	576	105175											
CRY2	1408	broad.mit.edu	37	chr11	45892361	45892361	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctgcaatcctgcgagacGgcactctgattactcctcgc	8	16	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45892361	A	A	45892361	1	1	107	0	1	0	0	0	0	0	0	0	3936	1131	39	4		4	CRY2	11	45892361	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2478990	45892361	89114155	577	105176											
ARFGAP2	84364	broad.mit.edu	37	chr11	47192879	47192879	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgatctattcagacttggaGaaacaataagcctagcatcc	8	9	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47192879	T	T	47192879	1	4	107	0	1	0	0	0	0	0	0	0	852	957	33	3		3	ARFGAP2	11	47192879	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1300518	47192879	87813637	578	105177											
OR5D18	219438	broad.mit.edu	37	chr11	55587648	55587648	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaatcacttcttctgtgaGttctcctcactactctccct	3	15	7	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55587648	A	A	55587648	2	1	107	1	0	0	0	0	0	0	0	1	11251	1020	36	4		4	OR5D18	11	55587648	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	8394769	55587648	79418868	579	105178											
SPRYD5	84767	broad.mit.edu	37	chr11	55648419	55648419	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtgggggactcttggaaTtgggcttttggtgtctgtaa	15	5	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55648419	A	A	55648419	1	1	107	0	1	0	0	0	0	0	0	0	15229	1508	52	5		5	SPRYD5	11	55648419	5'Flank	SNP	T	TCGA-44-2657-01A-01D-1105-08	60771	55648419	79358097	580	105179											
OR5M1	390168	broad.mit.edu	37	chr11	56380709	56380709	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catccagcgtaggagatggtCttctgttctgagaggaaatt	12	7	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56380709	T	T	56380709	2	4	107	1	0	0	0	0	0	0	0	1	11266	912	32	4		4	OR5M1	11	56380709	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	732290	56380709	78625807	581	105180											
OR9Q2	219957	broad.mit.edu	37	chr11	57958429	57958429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgctggttttttcagtgCctttgttcgaacggtcacag	11	9	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57958429	A	A	57958429	3	1	107	1	0	0	0	0	1	0	0	0	11350	739	26	3	469	3	OR9Q2	11	57958429	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1577720	57958429	77048087	582	105181											
OR10W1	81341	broad.mit.edu	37	chr11	58034470	58034470	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccctacggcccctttcatCtcactgttcctcagggcata	6	17	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58034470	A	A	58034470	3	1	107	1	0	0	0	0	1	0	0	0	11015	912	32	3	60	3	OR10W1	11	58034470	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	76041	58034470	76972046	583	105182											
OR5B3	441608	broad.mit.edu	37	chr11	58170573	58170573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttccacagtggcaaaagCtacaaagatatacatttgag	7	7	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58170573	A	A	58170573	3	1	107	1	0	0	0	0	1	0	0	0	11246	797	28	3	636	3	OR5B3	11	58170573	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	136103	58170573	76835943	584	105183											
OR4D11	219986	broad.mit.edu	37	chr11	59271767	59271767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaagccatctccacttGcacctcccacatcactgtgg	8	15	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59271767	T	T	59271767	3	4	107	1	0	0	0	0	1	0	0	0	11149	1319	46	3	721	3	OR4D11	11	59271767	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1101194	59271767	75734749	585	105184											
PLAC1L	219990	broad.mit.edu	37	chr11	59807963	59807963	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtcttgatgctcctcgctGtcttgatttggaccggtgct	11	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59807963	C	C	59807963	3	2	107	1	0	0	0	0	1	0	0	0	12108	1377	48	4	33	4	PLAC1L	11	59807963	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	536196	59807963	75198553	586	105185											
MS4A7	58475	broad.mit.edu	37	chr11	60161439	60161439	+	3'UTR	DEL	A	-	-													tagatactgtgaaacaaactAaaaaaaaaaaagcttttgtt							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60161439	-	-	60161439	6	5	107	0	1	1	0	1	0	0	0	0	9960	377	13	0		0	MS4A7	11	60161439	3'UTR	DEL	A	TCGA-44-2657-01A-01D-1105-08	353476	60161439	74845077	587	105186											
MS4A5	64232	broad.mit.edu	37	chr11	60197159	60197159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccatcatggattcaagCaccgcacacagtccggtgtt	9	13	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60197159	A	A	60197159	3	1	107	1	0	0	0	0	1	0	0	0	9957	709	25	3	14	3	MS4A5	11	60197159	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	35720	60197159	74809357	588	105187											
C11orf66	220004	broad.mit.edu	37	chr11	61252259	61252259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaccagcagcagggccagGacccgctggagcgggagaac	15	14	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61252259	T	T	61252259	3	4	107	1	0	0	0	0	1	0	0	0	1668	1174	41	3	495	3	C11orf66	11	61252259	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1055100	61252259	73754257	589	105188											
AHNAK	79026	broad.mit.edu	37	chr11	62284435	62284435	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaggtaccgaatttcagcttCccgtgtttccctttaacttt	6	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62284435	G	G	62284435	2	3	107	1	0	0	0	0	0	0	0	1	414	842	30	4		4	AHNAK	11	62284435	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1032176	62284435	72722081	590	105189											
GANAB	23193	broad.mit.edu	37	chr11	62400867	62400867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatgggcctctcccctcCaccctcccagccagccctat	5	22	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62400867	A	A	62400867	1	1	107	0	1	0	0	0	0	0	0	0	6295	609	21	2		2	GANAB	11	62400867	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	116432	62400867	72605649	591	105190											
NRXN2	9379	broad.mit.edu	37	chr11	64453464	64453464	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggagaaggctgaatggggcAgggtacaccagtgcttccct	16	9	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64453464	T	T	64453464	1	4	107	0	1	0	0	0	0	0	0	0	10761	203	7	5		5	NRXN2	11	64453464	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2052597	64453464	70553052	592	105191											
EHBP1L1	254102	broad.mit.edu	37	chr11	65350467	65350467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaaggtgcgatattggGgacccaagagatagcatcta	13	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65350467	T	T	65350467	3	4	107	1	0	0	0	0	1	0	0	0	5016	1232	43	2	2358	2	EHBP1L1	11	65350467	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	897003	65350467	69656049	593	105192											
CATSPER1	117144	broad.mit.edu	37	chr11	65790348	65790348	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctcgacttcagcgaaggtCtgggccaccagcatgacggt	12	12	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65790348	A	A	65790348	3	1	107	1	0	0	0	0	1	0	0	0	2713	912	32	3	985	3	CATSPER1	11	65790348	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	439881	65790348	69216168	594	105193											
SF3B2	10992	broad.mit.edu	37	chr11	65829421	65829421	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcgatatggaccacccccAtcgtatcccaacctgaaaat	6	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65829421	T	T	65829421	2	4	107	1	0	0	0	0	0	0	0	1	14264	204	8	5		5	SF3B2	11	65829421	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	39073	65829421	69177095	595	105194											
ARHGEF17	9828	broad.mit.edu	37	chr11	73071333	73071333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggctctggtgagatgctGgggcctgaggcctgggccct	18	11	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73071333	T	T	73071333	1	4	107	0	1	0	0	0	0	0	0	0	902	1363	47	2		2	ARHGEF17	11	73071333	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	7241912	73071333	61935183	596	105195											
UCP2	7351	broad.mit.edu	37	chr11	73686562	73686562	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaaggctcggggcccctcCttctggagcatggtaagggc	15	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73686562	T	T	73686562	2	4	107	1	0	0	0	0	0	0	0	1	17057	680	24	4		4	UCP2	11	73686562	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	615229	73686562	61319954	597	105196											
PGM2L1	283209	broad.mit.edu	37	chr11	74066805	74066805	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaagcttagcatgagaggaGagccagagaagtgacaggga	15	6	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74066805	C	C	74066805	1	2	107	0	1	0	0	0	0	0	0	0	11894	957	33	4		4	PGM2L1	11	74066805	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	380243	74066805	60939711	598	105197											
CAPN5	726	broad.mit.edu	37	chr11	76834940	76834940	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcccacctacctggctctGaccgttcccaccaccatctg	6	20	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76834940	T	T	76834940	1	4	107	0	1	0	0	0	0	0	0	0	2655	1305	45	3		3	CAPN5	11	76834940	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	2768135	76834940	58171576	599	105198											
TMEM135	65084	broad.mit.edu	37	chr11	86969986	86969986	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgcagttgctGctgttgctcggtttgcatct	12	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86969986	C	C	86969986	1	2	107	0	1	0	0	0	0	0	0	0	16174	1334	46	4		4	TMEM135	11	86969986	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	10135046	86969986	48036530	600	105199											
TYR	7299	broad.mit.edu	37	chr11	88911297	88911297	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggttcctgtcagaatatccTtctgtccaatgcaccacttg	7	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88911297	A	A	88911297	3	1	107	1	0	0	0	0	1	0	0	0	16939	1609	56	5	178	5	TYR	11	88911297	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	1941311	88911297	46095219	601	105200											
FAT3	120114	broad.mit.edu	37	chr11	92533884	92533884	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accctctagaaggggatgttAgtatttttgtgagggccctt	12	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92533884	T	T	92533884	3	4	107	1	0	0	0	0	1	0	0	0	5748	420	15	5	7739	5	FAT3	11	92533884	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	3622587	92533884	42472632	602	105201											
PIWIL4	143689	broad.mit.edu	37	chr11	94352911	94352911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttcttttcatattttgcCtctctaatttttagctcaag	5	8	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94352911	A	A	94352911	1	1	107	0	1	0	0	0	0	0	0	0	12055	696	24	2		2	PIWIL4	11	94352911	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1819027	94352911	40653605	603	105202											
CNTN5	53942	broad.mit.edu	37	chr11	99932110	99932110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaattcctttcgtggaCaattacaagtatacagtaag	7	6	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99932110	A	A	99932110	3	1	107	1	0	0	0	0	1	0	0	0	3676	479	17	3	1177	3	CNTN5	11	99932110	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	5579199	99932110	35074406	604	105203											
CASP1	834	broad.mit.edu	37	chr11	104936891	104936891	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgccttcccgaacaccatGagacaagaacaccgggaagg	10	12	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104936891	T	T	104936891	1	4	107	0	1	0	0	0	0	0	0	0	2694	1305	45	3		3	CASP1	11	104936891	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5004781	104936891	30069625	605	105204											
KBTBD3	143879	broad.mit.edu	37	chr11	105924167	105924167	+	Frame_Shift_Del	DEL	C	-	-													atctaagagacttttaatgtCccgggatcctctagtttttc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105924167	-	-	105924167	7	5	107	1	0	1	0	1	0	0	0	0	8064	855	30	0	593	0	KBTBD3	11	105924167	Frame_Shift_Del	DEL	C	TCGA-44-2657-01A-01D-1105-08	987276	105924167	29082349	606	105205											
SLN	6588	broad.mit.edu	37	chr11	107578577	107578577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcagtactgataggacCtcacaaggagccacataaga	8	12	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107578577	A	A	107578577	3	1	107	1	0	0	0	0	1	0	0	0	14866	681	24	2	19	2	SLN	11	107578577	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1654410	107578577	27427939	607	105206											
NCAM1	4684	broad.mit.edu	37	chr11	113140761	113140761	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttctcaattctggggcaTagaaggtccccaggaaggtg	13	8	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113140761	G	G	113140761	1	3	107	0	1	0	0	0	0	0	0	0	10297	1421	49	5		5	NCAM1	11	113140761	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	5562184	113140761	21865755	608	105207											
DRD2	1813	broad.mit.edu	37	chr11	113285167	113285168	+	Missense_Mutation	DNP	GG	TT	TT													tgcagagtttcatgtcctcgGggtgagtacagttgccctgt							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	113285168	TT	TT	113285167	3	4	107	1	0	0	0	0	1	0	0	0	4797	1232	43	2	603	2	DRD2	11	113285167	Missense_Mutation	DNP	GG	TCGA-44-2657-01A-01D-1105-08	144406	113285167	21721349	609	105208											
CBL	867	broad.mit.edu	37	chr11	119169118	119169118	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acactggtcccgaggagtcaGaaaatgaggatgatgggtat	14	6	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119169118	T	T	119169118	4	4	107	1	0	0	0	0	0	1	0	0	2726	943	33	3	2360	3	CBL	11	119169118	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5883951	119169118	15837398	610	105209											
MCAM	4162	broad.mit.edu	37	chr11	119182513	119182513	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctacccagagggagggcCtcaccaaaaatggccacgtt	10	13	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119182513	T	T	119182513	1	4	107	0	1	0	0	0	0	0	0	0	9461	696	24	4		4	MCAM	11	119182513	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	13395	119182513	15824003	611	105210											
TECTA	7007	broad.mit.edu	37	chr11	121060363	121060363	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgctgggattacaggcGtgagccaccgcgcccagcct	13	13	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121060363	C	C	121060363	1	2	107	0	1	0	0	0	0	0	0	0	15869	1160	40	4		4	TECTA	11	121060363	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1877850	121060363	13946153	612	105211											
FEZ1	9638	broad.mit.edu	37	chr11	125359482	125359482	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcttctcatcaaattcAtttacgaggtcctccatgga	7	10	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125359482	G	G	125359482	2	3	107	1	0	0	0	0	0	0	0	1	5880	214	8	5		5	FEZ1	11	125359482	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	4299119	125359482	9647034	613	105212											
ST14	6768	broad.mit.edu	37	chr11	130058381	130058381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcgagggacaggcggggGtggtaccacctcccctgact	16	13	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130058381	T	T	130058381	1	4	107	0	1	0	0	0	0	0	0	0	15329	1276	44	3		3	ST14	11	130058381	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	4698899	130058381	4948135	614	105213											
VPS26B	112936	broad.mit.edu	37	chr11	134095068	134095068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtggaaatccttctgaacGatgcagagagtaggaagcgg	15	6	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134095068	T	T	134095068	3	4	107	1	0	0	0	0	1	0	0	0	17325	1058	37	3	54	3	VPS26B	11	134095068	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4036687	134095068	911448	615	105214											
FKBP4	2288	broad.mit.edu	37	chr12	2908415	2908415	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtacctcaagcccaggtgaGgggtgggcacttcgtagggt	16	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2908415	C	C	2908415	1	2	107	0	1	0	0	0	0	0	0	0	5967	1015	35	4		4	FKBP4	12	2908415	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08		2908415	130943480	616	105215											
NCAPD2	9918	broad.mit.edu	37	chr12	6631848	6631848	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgcatatagtatttcatgAtaaggcatcataggaggagt	10	4	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6631848	G	G	6631848	1	3	107	0	1	0	0	0	0	0	0	0	10300	348	12	5		5	NCAPD2	12	6631848	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	3723433	6631848	127220047	617	105216											
CD163L1	283316	broad.mit.edu	37	chr12	7556500	7556500	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattgggtttgggacaatatCatcagcatccctctcctcca	7	12	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7556500	A	A	7556500	1	1	107	0	1	0	0	0	0	0	0	0	2998	841	29	3		3	CD163L1	12	7556500	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	924652	7556500	126295395	618	105217											
CLEC12B	387837	broad.mit.edu	37	chr12	10168296	10168296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcagaagttggttctGggaagatggctctgttccct	13	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10168296	T	T	10168296	3	4	107	1	0	0	0	0	1	0	0	0	3530	1357	47	2	668	2	CLEC12B	12	10168296	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2611796	10168296	123683599	619	105218											
PLCZ1	89869	broad.mit.edu	37	chr12	18846521	18846521	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaactcggacgggaattgTttcgagttgctgaagaacgt	12	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18846521	A	A	18846521	1	1	107	0	1	0	0	0	0	0	0	0	12139	1740	60	5		5	PLCZ1	12	18846521	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	8678225	18846521	115005374	620	105219											
SLCO1B3	28234	broad.mit.edu	37	chr12	21172118	21172118	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgcagtcattctggggcAttcagttctatcagatacaa	8	8	5	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21172118	T	T	21172118	1	4	107	0	1	0	0	0	0	0	0	0	14838	232	8	5		5	SLCO1B3	12	21172118	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2325597	21172118	112679777	621	105220											
KIAA0528	9847	broad.mit.edu	37	chr12	22676358	22676358	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttcattgattcatacttActccttcatttctttggatg	4	8	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22676358	C	C	22676358	5	2	107	1	0	0	0	0	0	0	1	0	8252	405	14	5	2276	5	KIAA0528	12	22676358	Splice_Site	SNP	A	TCGA-44-2657-01A-01D-1105-08	1504240	22676358	111175537	622	105221											
IFLTD1	160492	broad.mit.edu	37	chr12	25672689	25672689	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaatcactattgatttAatttatacatcacacatcca	1	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25672689	C	C	25672689	1	2	107	0	1	0	0	0	0	0	0	0	7600	377	13	5		5	IFLTD1	12	25672689	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2996331	25672689	108179206	623	105222											
IFLTD1	160492	broad.mit.edu	37	chr12	25702461	25702461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgtactaaagaatataCtccaagtttgtcttctcttc	4	8	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25702461	A	A	25702461	3	1	107	1	0	0	0	0	1	0	0	0	7600	565	20	3	1148	3	IFLTD1	12	25702461	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	29772	25702461	108149434	624	105223											
C12orf11	55726	broad.mit.edu	37	chr12	27058465	27058465	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttccattttctgttgtctCcatcctgaaataggaagaaa	6	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27058465	G	G	27058465	3	3	107	1	0	0	0	0	1	0	0	0	1688	864	30	4	38	4	C12orf11	12	27058465	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1356004	27058465	106793430	625	105224											
KLHDC5	57542	broad.mit.edu	37	chr12	27951196	27951196	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcctaaagggtaaagaaGggttaaagtaggtcacatat	10	4	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27951196	T	T	27951196	1	4	107	0	1	0	0	0	0	0	0	0	8430	1015	35	2		2	KLHDC5	12	27951196	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	892731	27951196	105900699	626	105225											
FGD4	121512	broad.mit.edu	37	chr12	32786499	32786499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggtggtttgttggaaatGctccgactacaaagctcaac	10	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32786499	T	T	32786499	3	4	107	1	0	0	0	0	1	0	0	0	5892	1319	46	3	1828	3	FGD4	12	32786499	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4835303	32786499	101065396	627	105226											
PKP2	5318	broad.mit.edu	37	chr12	33031935	33031935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgtaggttgtagacataCtcaggaacactgctggttcg	12	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33031935	A	A	33031935	3	1	107	1	0	0	0	0	1	0	0	0	12080	564	20	3	2442	3	PKP2	12	33031935	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	245436	33031935	100819960	628	105227											
LRRK2	120892	broad.mit.edu	37	chr12	40692296	40692296	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagctcattttagaaggGtaagaaagagctcattaaaa	10	5	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40692296	T	T	40692296	5	4	107	1	0	0	0	0	0	0	1	0	9120	1275	44	3	3442	3	LRRK2	12	40692296	Splice_Site	SNP	G	TCGA-44-2657-01A-01D-1105-08	7660361	40692296	93159599	629	105228											
CNTN1	1272	broad.mit.edu	37	chr12	41337888	41337888	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcgtcctttgatcctgcCttggatctcacatttgtttg	9	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41337888	A	A	41337888	2	1	107	1	0	0	0	0	0	0	0	1	3672	668	24	2		2	CNTN1	12	41337888	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	645592	41337888	92514007	630	105229											
ARID2	196528	broad.mit.edu	37	chr12	46245363	46245363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaacttacaaatattgccaGgtccactgatctcaaatagc	6	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46245363	T	T	46245363	3	4	107	1	0	0	0	0	1	0	0	0	917	1000	35	2	3515	2	ARID2	12	46245363	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4907475	46245363	87606532	631	105230											
ACCN2	41	broad.mit.edu	37	chr12	50471085	50471085	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaagggtgggacgggcaaTgggctggaaatcatgctgga	18	5	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50471085	A	A	50471085	3	1	107	1	0	0	0	0	1	0	0	0	129	1461	51	5	658	5	ACCN2	12	50471085	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	4225722	50471085	83380810	632	105231											
BIN2	51411	broad.mit.edu	37	chr12	51685619	51685619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggagggcctggggcttGcagtggctctgggtggagga	21	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51685619	T	T	51685619	3	4	107	1	0	0	0	0	1	0	0	0	1439	1319	46	3	442	3	BIN2	12	51685619	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1214534	51685619	82166276	633	105232											
KRT6B	3854	broad.mit.edu	37	chr12	52841600	52841600	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcagcttgcggtaggtggcGatctccacatccagggccag	14	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52841600	A	A	52841600	2	1	107	1	0	0	0	0	0	0	0	1	8552	1048	37	4		4	KRT6B	12	52841600	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	1155981	52841600	81010295	634	105233											
PDE1B	5153	broad.mit.edu	37	chr12	54943667	54943667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggctgagcatggagctgtCcccccgcagtcctccggaga	14	14	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54943667	A	A	54943667	3	1	107	1	0	0	0	0	1	0	0	0	11728	855	30	3	13	3	PDE1B	12	54943667	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2102067	54943667	78908228	635	105234											
SHMT2	6472	broad.mit.edu	37	chr12	57627209	57627209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgctaactgatgctggGgctgatggaagggaaatgcc	14	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57627209	T	T	57627209	1	4	107	0	1	0	0	0	0	0	0	0	14399	1247	43	2		2	SHMT2	12	57627209	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2683542	57627209	76224686	636	105235											
KIF5A	3798	broad.mit.edu	37	chr12	57957497	57957497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagggttctggctttggtGgttgaggggctaggagtgtt	20	3	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57957497	T	T	57957497	1	4	107	0	1	0	0	0	0	0	0	0	8375	1363	47	2		2	KIF5A	12	57957497	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	330288	57957497	75894398	637	105236											
GEFT	115557	broad.mit.edu	37	chr12	58007452	58007452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctccgacgctgaagtggGggcctcctcctgctttcatc	12	14	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58007452	T	T	58007452	1	4	107	0	1	0	0	0	0	0	0	0	6392	1247	43	2		2	GEFT	12	58007452	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	49955	58007452	75844443	638	105237											
AVPR1A	552	broad.mit.edu	37	chr12	63544585	63544585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggctggagttgcccgagGgccccgcgtcgggaccggcg	19	13	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63544585	T	T	63544585	3	4	107	1	0	0	0	0	1	0	0	0	1236	1232	43	2	1232	2	AVPR1A	12	63544585	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5537133	63544585	70307310	639	105238											
TSPAN8	7103	broad.mit.edu	37	chr12	71533700	71533700	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttgctcattcaacaaatatCcattgagtgcctcctatgtg	6	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71533700	G	G	71533700	1	3	107	0	1	0	0	0	0	0	0	0	16778	870	30	4		4	TSPAN8	12	71533700	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	7989115	71533700	62318195	640	105239											
SYT1	6857	broad.mit.edu	37	chr12	79701798	79701798	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagacgtttggaactcagcGttgtagaacttcagcctgca	11	9	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79701798	A	A	79701798	1	1	107	0	1	0	0	0	0	0	0	0	15584	1160	40	4		4	SYT1	12	79701798	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	8168098	79701798	54150097	641	105240											
ACSS3	79611	broad.mit.edu	37	chr12	81503198	81503198	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttaaatatctagtttacAgctgtcattacttgacatag	5	7	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81503198	G	G	81503198	1	3	107	0	1	0	0	0	0	0	0	0	190	203	7	5		5	ACSS3	12	81503198	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1801400	81503198	52348697	642	105241											
LRRIQ1	84125	broad.mit.edu	37	chr12	85554309	85554309	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggattttttttttactacCaccatataagaaatatgtgg	7	5	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85554309	T	T	85554309	1	4	107	0	1	0	0	0	0	0	0	0	9116	609	21	4		4	LRRIQ1	12	85554309	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	4051111	85554309	48297586	643	105242											
ANKS1B	56899	broad.mit.edu	37	chr12	99640694	99640694	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataaaggttctgaaagccacGatataatagcagtgccctta	8	8	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99640694	A	A	99640694	1	1	107	0	1	0	0	0	0	0	0	0	689	1073	37	4		4	ANKS1B	12	99640694	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	14086385	99640694	34211201	644	105243											
SYCP3	50511	broad.mit.edu	37	chr12	102131692	102131692	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcccagatttcctggaatActtttttccggaggacacca	7	12	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102131692	T	T	102131692	3	4	107	1	0	0	0	0	1	0	0	0	15553	391	14	5	720	5	SYCP3	12	102131692	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	2490998	102131692	31720203	645	105244											
STAB2	55576	broad.mit.edu	37	chr12	103988316	103988316	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcacaatgcttggactttgaGacttgcttcttggtatctca	9	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103988316	T	T	103988316	1	4	107	0	1	0	0	0	0	0	0	0	15356	957	33	3		3	STAB2	12	103988316	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1856624	103988316	29863579	646	105245											
SSH1	54434	broad.mit.edu	37	chr12	109246300	109246300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcgtgacccaccgcacCcagcccaaaattggcatatt	8	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109246300	A	A	109246300	1	1	107	0	1	0	0	0	0	0	0	0	15302	638	22	2		2	SSH1	12	109246300	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5257984	109246300	24605595	647	105246											
ACACB	32	broad.mit.edu	37	chr12	109696582	109696582	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagggcaacgggaaccttGctgggctgcaatgggagggt	19	7	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109696582	T	T	109696582	1	4	107	0	1	0	0	0	0	0	0	0	107	1334	46	3		3	ACACB	12	109696582	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	450282	109696582	24155313	648	105247											
C12orf51	283450	broad.mit.edu	37	chr12	112743792	112743792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgctgcaaggttcttaggcCctttgcacaccaatataaaa	7	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112743792	A	A	112743792	1	1	107	0	1	0	0	0	0	0	0	0	1709	638	22	2		2	C12orf51	12	112743792	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3047210	112743792	21108103	649	105248											
OAS1	4938	broad.mit.edu	37	chr12	113357092	113357092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttagtccttcctcaaaggGggatccagatggcatgtcac	11	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113357092	T	T	113357092	1	4	107	0	1	0	0	0	0	0	0	0	10894	1247	43	2		2	OAS1	12	113357092	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	613300	113357092	20494803	650	105249											
ABCB9	23457	broad.mit.edu	37	chr12	123444365	123444365	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgggtgcctggccgcaCggtggacagcagccaccaga	16	14	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123444365	T	T	123444365	3	4	107	1	0	0	0	0	1	0	0	0	48	536	19	4	1926	4	ABCB9	12	123444365	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	10087273	123444365	10407530	651	105250											
PIWIL1	9271	broad.mit.edu	37	chr12	130831397	130831397	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacattttatggttttcaAtgttgccttattaagcaagc	6	6	1	0	rs150377061	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130831397	G	G	130831397	1	3	107	0	1	0	0	0	0	0	0	0	12052	116	4	5		5	PIWIL1	12	130831397	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	7387032	130831397	3020498	652	105251											
ULK1	8408	broad.mit.edu	37	chr12	132399719	132399719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgctgagcatggaggcGtcctggccaggaagatgtct	14	12	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132399719	T	T	132399719	3	4	107	1	0	0	0	0	1	0	0	0	17101	1145	40	3	1531	3	ULK1	12	132399719	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1568322	132399719	1452176	653	105252											
EP400	57634	broad.mit.edu	37	chr12	132511901	132511901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgctggtggagggtgaGgttccatggagcatgctggt	19	5	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132511901	T	T	132511901	1	4	107	0	1	0	0	0	0	0	0	0	5191	1015	35	2		2	EP400	12	132511901	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	112182	132511901	1339994	654	105253											
EP400	57634	broad.mit.edu	37	chr12	132514727	132514727	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcacattgtttacattGtctctgatgggtcagtcact	9	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132514727	T	T	132514727	1	4	107	0	1	0	0	0	0	0	0	0	5191	1392	48	3		3	EP400	12	132514727	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2826	132514727	1337168	655	105254											
GOLGA3	2802	broad.mit.edu	37	chr12	133360732	133360732	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccccacgctgccgccacagCagatggccaggcctcacctc	10	20	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133360732	G	G	133360732	1	3	107	0	1	0	0	0	0	0	0	0	6618	697	25	4		4	GOLGA3	12	133360732	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	846005	133360732	491163	656	105255											
PARP4	143	broad.mit.edu	37	chr13	25029154	25029154	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggccaaagcgcactcaCctgtgccgaactggataata	10	13	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25029154	A	A	25029154	5	1	107	1	0	0	0	0	0	0	1	0	11557	521	18	3	2467	3	PARP4	13	25029154	Splice_Site	SNP	C	TCGA-44-2657-01A-01D-1105-08		25029154	90140724	657	105256											
FAM123A	219287	broad.mit.edu	37	chr13	25744119	25744119	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccccgctgtagctatcccGggggatgcccgccttcttcc	11	17	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25744119	T	T	25744119	2	4	107	1	0	0	0	0	0	0	0	1	5468	1115	39	1		1	FAM123A	13	25744119	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	714965	25744119	89425759	658	105257											
MTUS2	23281	broad.mit.edu	37	chr13	30066711	30066711	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagtcacaggtcttaagTctgccaaaagagccttgttt	9	9	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30066711	C	C	30066711	1	2	107	0	1	0	0	0	0	0	0	0	10060	1682	58	5		5	MTUS2	13	30066711	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	4322592	30066711	85103167	659	105258											
FRY	10129	broad.mit.edu	37	chr13	32698393	32698393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagaataccttcagtgtGctttaatgtaaatattttaa	6	5	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32698393	T	T	32698393	1	4	107	0	1	0	0	0	0	0	0	0	6123	1334	46	3		3	FRY	13	32698393	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2631682	32698393	82471485	660	105259											
TRPC4	7223	broad.mit.edu	37	chr13	38225593	38225593	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttccattctatatctgcatGgtcctgaacaggagaacatg	8	9	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38225593	C	C	38225593	3	2	107	1	0	0	0	0	1	0	0	0	16705	1348	47	4	1076	4	TRPC4	13	38225593	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	5527200	38225593	76944285	661	105260											
COG6	57511	broad.mit.edu	37	chr13	40297660	40297660	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgcactctggattcttgGctctaccacatattagctgt	8	11	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40297660	C	C	40297660	1	2	107	0	1	0	0	0	0	0	0	0	3694	1218	42	4		4	COG6	13	40297660	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2072067	40297660	74872218	662	105261											
C13orf18	80183	broad.mit.edu	37	chr13	46942988	46942988	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttaaaaatggggaaaaggGagtttaaagattacctaata	10	2	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46942988	C	C	46942988	1	2	107	0	1	0	0	0	0	0	0	0	1733	1189	41	4		4	C13orf18	13	46942988	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	6645328	46942988	68226890	663	105262											
RB1	5925	broad.mit.edu	37	chr13	48881624	48881624	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactatacaaaaattgaaagAtagaaaaatataaagacaat	4	4	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48881624	T	T	48881624	1	4	107	0	1	0	0	0	0	0	0	0	13206	348	12	5		5	RB1	13	48881624	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1938636	48881624	66288254	664	105263											
NEK5	341676	broad.mit.edu	37	chr13	52663447	52663447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgaaggtactcagcaGgccttagaaaataagaatgt	9	7	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52663447	T	T	52663447	3	4	107	1	0	0	0	0	1	0	0	0	10422	1000	35	2	951	2	NEK5	13	52663447	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3781823	52663447	62506431	665	105264											
NEK3	4752	broad.mit.edu	37	chr13	52726884	52726884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaactggctcatgttaacCtacaattccaaagaatcatc	5	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52726884	A	A	52726884	1	1	107	0	1	0	0	0	0	0	0	0	10420	696	24	2		2	NEK3	13	52726884	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	63437	52726884	62442994	666	105265											
PCDH8	5100	broad.mit.edu	37	chr13	53422541	53422541	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagctgcaaggggaaaaggcAggggctgccccaacgcctca	15	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53422541	T	T	53422541	3	4	107	1	0	0	0	0	1	0	0	0	11611	188	7	5	3193	5	PCDH8	13	53422541	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	695657	53422541	61747337	667	105266											
PCDH8	5100	broad.mit.edu	37	chr13	53422595	53422595	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagcctcaagtgcgatccGaaaggctaaggaagtcttct	10	11	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53422595	T	T	53422595	1	4	107	0	1	0	0	0	0	0	0	0	11611	1073	37	3		3	PCDH8	13	53422595	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	54	53422595	61747283	668	105267											
LMO7	4008	broad.mit.edu	37	chr13	76197472	76197472	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggtaatatttttctgtAttttctaaggcagaatcaga	7	4	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76197472	G	G	76197472	1	3	107	0	1	0	0	0	0	0	0	0	8929	464	16	5		5	LMO7	13	76197472	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	22774877	76197472	38972406	669	105268											
SLITRK1	114798	broad.mit.edu	37	chr13	84455027	84455027	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttatcctctagcaggatctCcgcaataccagggatttgct	9	11	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84455027	T	T	84455027	3	4	107	1	0	0	0	0	1	0	0	0	14856	864	30	4	1478	4	SLITRK1	13	84455027	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	8257555	84455027	30714851	670	105269											
SLITRK5	26050	broad.mit.edu	37	chr13	88327846	88327846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgtgagctgtgaaaaccGggggatcatcagtctctctg	12	9	4	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88327846	T	T	88327846	3	4	107	1	0	0	0	0	1	0	0	0	14860	1116	39	1	205	1	SLITRK5	13	88327846	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3872819	88327846	26842032	671	105270											
NALCN	259232	broad.mit.edu	37	chr13	101735254	101735254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcaacagaaacagcacaCgagtcgttgcccacgtccat	8	14	0	1	rs139049605	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101735254	A	A	101735254	1	1	107	0	1	0	0	0	0	0	0	0	10242	551	19	3		3	NALCN	13	101735254	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	13407408	101735254	13434624	672	105271											
NALCN	259232	broad.mit.edu	37	chr13	101763618	101763618	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagataaatgcatggtttgTacacttgagatgaataacac	8	6	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101763618	C	C	101763618	1	2	107	0	1	0	0	0	0	0	0	0	10242	1653	57	5		5	NALCN	13	101763618	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	28364	101763618	13406260	673	105272											
COL4A2	1284	broad.mit.edu	37	chr13	111132690	111132690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggccatccaggaagccCtggatttaaaggaattgatg	12	8	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111132690	A	A	111132690	3	1	107	1	0	0	0	0	1	0	0	0	3722	681	24	2	2829	2	COL4A2	13	111132690	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	9369072	111132690	4037188	674	105273											
SOX1	6656	broad.mit.edu	37	chr13	112722333	112722333	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacccggattacaagtacCggccgcgccgcaagaccaag	11	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112722333	A	A	112722333	2	1	107	1	0	0	0	0	0	0	0	1	15054	643	23	1		1	SOX1	13	112722333	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1589643	112722333	2447545	675	105274											
ATP11A	23250	broad.mit.edu	37	chr13	113527887	113527887	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttttttttttccttttagCttgcattggacacacactac	4	11	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113527887	G	G	113527887	3	3	107	1	0	0	0	0	1	0	0	0	1123	811	28	4	3164	4	ATP11A	13	113527887	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	805554	113527887	1641991	676	105275											
TFDP1	7027	broad.mit.edu	37	chr13	114287464	114287464	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaaaggagagaagaatgGcaagggcctacggcatttct	14	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114287464	A	A	114287464	3	1	107	1	0	0	0	0	1	0	0	0	15920	1203	42	4	356	4	TFDP1	13	114287464	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	759577	114287464	882414	677	105276											
OR4K2	390431	broad.mit.edu	37	chr14	20344288	20344288	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaggatggaaagaataGtcaaggtaagttttatgaga	13	1	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20344288	C	C	20344288	1	2	107	0	1	0	0	0	0	0	0	0	11166	1044	36	4		4	OR4K2	14	20344288	5'Flank	SNP	G	TCGA-44-2657-01A-01D-1105-08		20344288	87005252	678	105277											
METT11D1	64745	broad.mit.edu	37	chr14	21458201	21458201	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctactgacattaggaagaTggtgccccggccttggagtg	14	9	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21458201	C	C	21458201	3	2	107	1	0	0	0	0	1	0	0	0	9584	1464	51	5	42	5	METT11D1	14	21458201	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	1113913	21458201	85891339	679	105278											
NDRG2	57447	broad.mit.edu	37	chr14	21488913	21488913	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaatcagtctggaccctccTttccctcctctgggcttttt	6	15	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21488913	A	A	21488913	1	1	107	0	1	0	0	0	0	0	0	0	10347	1624	56	5		5	NDRG2	14	21488913	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	30712	21488913	85860627	680	105279											
CHD8	57680	broad.mit.edu	37	chr14	21870599	21870599	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctctctcgtaggaattacGagtgatgaggcggtacacct	11	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21870599	A	A	21870599	3	1	107	1	0	0	0	0	1	0	0	0	3362	1058	37	4	4047	4	CHD8	14	21870599	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	381686	21870599	85478941	681	105280											
SLC7A7	9056	broad.mit.edu	37	chr14	23282100	23282100	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacctcctaccccagcCccacttacaaatgcaggcag	5	20	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23282100	T	T	23282100	1	4	107	0	1	0	0	0	0	0	0	0	14817	638	22	4		4	SLC7A7	14	23282100	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1411501	23282100	84067440	682	105281											
MYH6	4624	broad.mit.edu	37	chr14	23857758	23857758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggcatctgggtgtcagtGccccctgccctcacccccca	10	18	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23857758	T	T	23857758	1	4	107	0	1	0	0	0	0	0	0	0	10132	1334	46	3		3	MYH6	14	23857758	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	575658	23857758	83491782	683	105282											
MYH6	4624	broad.mit.edu	37	chr14	23871694	23871694	+	Frame_Shift_Del	DEL	C	-	-													ttcggtgccgtctggctccgCctgctcctcccgctgcttct							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23871694	-	-	23871694	7	5	107	1	0	1	0	1	0	0	0	0	10132	739	26	0	4811	0	MYH6	14	23871694	Frame_Shift_Del	DEL	C	TCGA-44-2657-01A-01D-1105-08	13936	23871694	83477846	684	105283											
NOVA1	4857	broad.mit.edu	37	chr14	26917950	26917950	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatattgagacagctgccacTttgtggatcctcttgtatct	9	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26917950	A	A	26917950	3	1	107	1	0	0	0	0	1	0	0	0	10649	1609	56	5	788	5	NOVA1	14	26917950	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	3046256	26917950	80431590	685	105284											
SRP54	6729	broad.mit.edu	37	chr14	35492299	35492316	+	Intron	DEL	AGCTTGTTATTAGTTAAC	-	-													tttcaaaggtaagaaaaataAgcttgttattagttaacaga							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35492316	-	-	35492299	6	5	107	0	1	1	0	1	0	0	0	0	15273	87	3	0		0	SRP54	14	35492299	Intron	DEL	AGCTTGTTATTAGTTAAC	TCGA-44-2657-01A-01D-1105-08	8574349	35492299	71857241	686	105285											
RALGAPA1	253959	broad.mit.edu	37	chr14	36097026	36097026	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcactgtaatgattgtcgtGattttcacacacctgacttg	7	9	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36097026	A	A	36097026	3	1	107	1	0	0	0	0	1	0	0	0	13121	1290	45	4	1686	4	RALGAPA1	14	36097026	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	604727	36097026	71252514	687	105286											
LRFN5	145581	broad.mit.edu	37	chr14	42356876	42356876	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acattcttatcacaactgtaAaggatacaggtgcttttacc	6	9	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42356876	T	T	42356876	4	4	107	1	0	0	0	0	0	1	0	0	9028	15	1	5	1050	5	LRFN5	14	42356876	Nonsense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	6259850	42356876	64992664	688	105287											
C14orf138	79609	broad.mit.edu	37	chr14	50583010	50583010	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgccagctcttacccgagGgtagcagccatgagccccac	10	18	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50583010	A	A	50583010	2	1	107	1	0	0	0	0	0	0	0	1	1759	1219	43	4		4	C14orf138	14	50583010	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	8226134	50583010	56766530	689	105288											
ATL1	51062	broad.mit.edu	37	chr14	51058280	51058280	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttattgatggatactcagGgaacctttgatagtcagtca	10	6	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51058280	A	A	51058280	3	1	107	1	0	0	0	0	1	0	0	0	1110	1233	43	4	459	4	ATL1	14	51058280	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	475270	51058280	56291260	690	105289											
TRIM9	114088	broad.mit.edu	37	chr14	51489622	51489622	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcttctgttgagggcatcGatgagggcatcacattgggc	13	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51489622	T	T	51489622	2	4	107	1	0	0	0	0	0	0	0	1	16674	1048	37	3		3	TRIM9	14	51489622	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	431342	51489622	55859918	691	105290											
PSMC6	5706	broad.mit.edu	37	chr14	53180639	53180639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacccagagttatttcagcGtgtaggaataatacctccaa	7	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53180639	T	T	53180639	3	4	107	1	0	0	0	0	1	0	0	0	12797	1145	40	3	550	3	PSMC6	14	53180639	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1691017	53180639	54168901	692	105291											
GCH1	2643	broad.mit.edu	37	chr14	55310797	55310797	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcctcccggaacacacccaAcattgtgctggtcacagttt	7	14	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55310797	T	T	55310797	3	4	107	1	0	0	0	0	1	0	0	0	6353	40	2	5	165	5	GCH1	14	55310797	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	2130158	55310797	52038743	693	105292											
DACT1	51339	broad.mit.edu	37	chr14	59111926	59111926	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattggccaaagagtcaagcTggtgctgaccaattcatttc	9	9	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59111926	A	A	59111926	1	1	107	0	1	0	0	0	0	0	0	0	4255	1595	55	5		5	DACT1	14	59111926	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	3801129	59111926	48237614	694	105293											
DACT1	51339	broad.mit.edu	37	chr14	59112403	59112403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaaaacacaccctgtaagGaccaacaaaccaagaaccag	5	12	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59112403	T	T	59112403	3	4	107	1	0	0	0	0	1	0	0	0	4255	1165	41	3	1076	3	DACT1	14	59112403	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	477	59112403	48237137	695	105294											
SYNE2	23224	broad.mit.edu	37	chr14	64557634	64557634	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccattgctgagatagtGtcttaccaagtggaactgag	10	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64557634	T	T	64557634	2	4	107	1	0	0	0	0	0	0	0	1	15565	1364	48	3		3	SYNE2	14	64557634	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	5445231	64557634	42791906	696	105295											
SYNE2	23224	broad.mit.edu	37	chr14	64591827	64591827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgggtattctacccagcGtgactatgtataactttaga	8	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64591827	T	T	64591827	3	4	107	1	0	0	0	0	1	0	0	0	15565	1145	40	3	13731	3	SYNE2	14	64591827	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	34193	64591827	42757713	697	105296											
ZFYVE26	23503	broad.mit.edu	37	chr14	68249881	68249881	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgacaagctgggtttgcTgacctttaacctcggggaag	12	10	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68249881	A	A	68249881	3	1	107	1	0	0	0	0	1	0	0	0	17794	1580	55	5	3719	5	ZFYVE26	14	68249881	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	3658054	68249881	39099659	698	105297											
DCAF5	8816	broad.mit.edu	37	chr14	69521751	69521751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttcggggctgggtgacCgtggccggggaaagagatct	17	9	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69521751	A	A	69521751	3	1	107	1	0	0	0	0	1	0	0	0	4306	652	23	1	1180	1	DCAF5	14	69521751	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1271870	69521751	37827789	699	105298											
SMOC1	64093	broad.mit.edu	37	chr14	70444600	70444600	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccaaccacaatgcattctGagtggctatgtttttgtttc	7	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70444600	T	T	70444600	1	4	107	0	1	0	0	0	0	0	0	0	14915	1305	45	3		3	SMOC1	14	70444600	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	922849	70444600	36904940	700	105299											
MAP3K9	4293	broad.mit.edu	37	chr14	71206733	71206733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccctgtgtgttctggccCcagctaatttgggaaacagt	11	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71206733	A	A	71206733	1	1	107	0	1	0	0	0	0	0	0	0	9349	638	22	2		2	MAP3K9	14	71206733	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	762133	71206733	36142807	701	105300											
RGS6	9628	broad.mit.edu	37	chr14	72925085	72925085	+	Frame_Shift_Del	DEL	G	-	-													ggcaccttttatcgtttccaGgtaagcctgctggctcctcc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72925085	-	-	72925085	7	5	107	1	0	1	0	1	0	0	0	0	13418	1014	35	0	356	0	RGS6	14	72925085	Frame_Shift_Del	DEL	G	TCGA-44-2657-01A-01D-1105-08	1718352	72925085	34424455	702	105301											
RGS6	9628	broad.mit.edu	37	chr14	73029177	73029177	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgcagtcctcctgacCgttcctaccgcaggtccagg	10	16	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73029177	T	T	73029177	1	4	107	0	1	0	0	0	0	0	0	0	13418	667	23	4		4	RGS6	14	73029177	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	104092	73029177	34320363	703	105302											
C14orf115	55237	broad.mit.edu	37	chr14	74824588	74824588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccttgccccccagggagGtgctgggcatggaggagcta	17	12	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74824588	T	T	74824588	3	4	107	1	0	0	0	0	1	0	0	0	1753	1261	44	3	1104	3	C14orf115	14	74824588	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1795411	74824588	32524952	704	105303											
YLPM1	56252	broad.mit.edu	37	chr14	75265213	75265213	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagaagatagtcgagagaaGatgaacagaggagaaggtag	16	2	0	7			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75265213	T	T	75265213	3	4	107	1	0	0	0	0	1	0	0	0	17613	933	33	3	3231	3	YLPM1	14	75265213	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	440625	75265213	32084327	705	105304											
CATSPERB	79820	broad.mit.edu	37	chr14	92047504	92047504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatttagcaatgcaaaaCactgaaaatttaatgttccc	5	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92047504	A	A	92047504	1	1	107	0	1	0	0	0	0	0	0	0	2717	493	17	3		3	CATSPERB	14	92047504	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	16782291	92047504	15302036	706	105305											
SERPINA4	5267	broad.mit.edu	37	chr14	95030082	95030082	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctcggcggcctacgccaTgctttccctgggggcctgct	12	16	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95030082	C	C	95030082	3	2	107	1	0	0	0	0	1	0	0	0	14204	1464	51	5	265	5	SERPINA4	14	95030082	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	2982578	95030082	12319458	707	105306											
VRK1	7443	broad.mit.edu	37	chr14	97342634	97342634	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggttagattattttctctCcacaataattataaagttga	5	6	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97342634	G	G	97342634	1	3	107	0	1	0	0	0	0	0	0	0	17346	870	30	4		4	VRK1	14	97342634	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2312552	97342634	10006906	708	105307											
HSP90AA1	3320	broad.mit.edu	37	chr14	102549392	102549392	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaacttttttctccaaTatgtctttcatgattttgca	3	8	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102549392	C	C	102549392	3	2	107	1	0	0	0	0	1	0	0	0	7470	1396	49	5	476	5	HSP90AA1	14	102549392	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	5206758	102549392	4800148	709	105308											
HSP90AA1	3320	broad.mit.edu	37	chr14	102551666	102551666	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggatatccaataaactgaGaatgtttcttcacaatctcc	6	9	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102551666	A	A	102551666	3	1	107	1	0	0	0	0	1	0	0	0	7470	942	33	4	1598	4	HSP90AA1	14	102551666	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2274	102551666	4797874	710	105309											
INF2	64423	broad.mit.edu	37	chr14	105170110	105170118	+	Intron	DEL	ATGATGTCT	-	-													agcatcactgtgtgtccagcAtgatgtctcccctccagagc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105170118	-	-	105170110	6	5	107	0	1	1	0	1	0	0	0	0	7804	232	8	0		0	INF2	14	105170110	Intron	DEL	ATGATGTCT	TCGA-44-2657-01A-01D-1105-08	2618444	105170110	2179430	711	105310											
C15orf2	23742	broad.mit.edu	37	chr15	24921196	24921196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccgtcgcaggccttcagCagccagcatcttcgtcgccc	10	19	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921196	A	A	24921196	3	1	107	1	0	0	0	0	1	0	0	0	1797	710	25	3	184	3	C15orf2	15	24921196	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08		24921196	77610196	712	105311											
HERC2	8924	broad.mit.edu	37	chr15	28389295	28389295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcttctgttagaggcaaGgttgagtcggaagtctaaca	13	6	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28389295	A	A	28389295	3	1	107	1	0	0	0	0	1	0	0	0	7125	1000	35	4	3361	4	HERC2	15	28389295	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3468099	28389295	74142097	713	105312											
LTK	4058	broad.mit.edu	37	chr15	41805132	41805132	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctggctgggccagaggggtCtggtatggtgagcgaaagag	19	7	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41805132	A	A	41805132	1	1	107	0	1	0	0	0	0	0	0	0	9167	928	32	3		3	LTK	15	41805132	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	13415837	41805132	60726260	714	105313											
PLA2G4F	255189	broad.mit.edu	37	chr15	42434107	42434107	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcctgcacagagtccccatCgctcctccctctacaagccc	5	20	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42434107	T	T	42434107	1	4	107	0	1	0	0	0	0	0	0	0	12101	899	31	4		4	PLA2G4F	15	42434107	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	628975	42434107	60097285	715	105314											
TRIM69	140691	broad.mit.edu	37	chr15	45028942	45028942	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttaacttagcaggGcttctaggaatagtgtggaa	10	4	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45028942	A	A	45028942	1	1	107	0	1	0	0	0	0	0	0	0	16667	1218	42	4		4	TRIM69	15	45028942	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2594835	45028942	57502450	716	105315											
SHC4	399694	broad.mit.edu	37	chr15	49183146	49183146	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaaatggtattctcccaGccccacaggaggaaatgctg	9	12	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49183146	T	T	49183146	1	4	107	0	1	0	0	0	0	0	0	0	14386	986	34	3		3	SHC4	15	49183146	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	4154204	49183146	53348246	717	105316											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51350211	51350211	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggttaaagacgtggttgAtgcgcccgtgggtcctgggc	17	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51350211	T	T	51350211	3	4	107	1	0	0	0	0	1	0	0	0	16402	333	12	5	136	5	TNFAIP8L3	15	51350211	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	2167065	51350211	51181181	718	105317											
UNC13C	440279	broad.mit.edu	37	chr15	54914593	54914593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactgccaccccaggaacgGgagatcataaagtcactgta	9	12	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54914593	A	A	54914593	3	1	107	1	0	0	0	0	1	0	0	0	17112	1233	43	4	6289	4	UNC13C	15	54914593	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3564382	54914593	47616799	719	105318											
TLN2	83660	broad.mit.edu	37	chr15	63017385	63017385	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgttagggtgtttgctAaagttgcggcatgttgagaa	14	3	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63017385	G	G	63017385	1	3	107	0	1	0	0	0	0	0	0	0	16071	377	13	5		5	TLN2	15	63017385	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	8102792	63017385	39514007	720	105319											
HERC1	8925	broad.mit.edu	37	chr15	63931064	63931064	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcttctaatcattaagtCttatttccaaaaaagaatat	2	8	4	1	rs59224907	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63931064	A	A	63931064	1	1	107	0	1	0	0	0	0	0	0	0	7124	928	32	3		3	HERC1	15	63931064	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	913679	63931064	38600328	721	105320											
CCDC33	80125	broad.mit.edu	37	chr15	74560506	74560506	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcaaatggaaaagggaagAtttattatattgatctcctt	7	4	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74560506	G	G	74560506	1	3	107	0	1	0	0	0	0	0	0	0	2833	348	12	5		5	CCDC33	15	74560506	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	10629442	74560506	27970886	722	105321											
ADAMTS7	11173	broad.mit.edu	37	chr15	79063993	79063993	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccagttgcccctgcgtgcGtatgtgaaggtggtccctgc	13	13	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79063993	A	A	79063993	2	1	107	1	0	0	0	0	0	0	0	1	271	1140	40	4		4	ADAMTS7	15	79063993	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	4503487	79063993	23467399	723	105322											
RASGRF1	5923	broad.mit.edu	37	chr15	79298770	79298770	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcacaatataaggaggcGtcggacctgagaggggagga	15	7	2	1	rs141856364	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79298770	A	A	79298770	2	1	107	1	0	0	0	0	0	0	0	1	13180	1136	40	4		4	RASGRF1	15	79298770	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	234777	79298770	23232622	724	105323											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84659818	84659818	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctgaacctaacatagtttCctgctccctttgaattaaga	6	11	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84659818	T	T	84659818	1	4	107	0	1	0	0	0	0	0	0	0	276	870	30	4		4	ADAMTSL3	15	84659818	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5361048	84659818	17871574	725	105324											
ALPK3	57538	broad.mit.edu	37	chr15	85399864	85399864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaacacagacagcccagaGgacacgtgcagataggaaga	13	9	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85399864	T	T	85399864	3	4	107	1	0	0	0	0	1	0	0	0	546	1000	35	2	2523	2	ALPK3	15	85399864	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	740046	85399864	17131528	726	105325											
LRRC28	123355	broad.mit.edu	37	chr15	99824905	99824905	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcatggtttggccaagtAttggactccacccccatagg	10	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99824905	T	T	99824905	1	4	107	0	1	0	0	0	0	0	0	0	9069	464	16	5		5	LRRC28	15	99824905	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	14425041	99824905	2706487	727	105326											
MSLNL	401827	broad.mit.edu	37	chr16	825405	825405	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggccgggtggccgggcaggGaggggcactcacttgtagaa	19	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	825405	T	T	825405	1	4	107	0	1	0	0	0	0	0	0	0	9976	1189	41	3		3	MSLNL	16	825405	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08		825405	89529348	728	105327											
NUBP2	10101	broad.mit.edu	37	chr16	1837635	1837635	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcgcagggccacgtgtgcaGacctgccctgccctgaccgc	14	17	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1837635	C	C	1837635	1	2	107	0	1	0	0	0	0	0	0	0	10811	957	33	4		4	NUBP2	16	1837635	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1012230	1837635	88517118	729	105328											
C16orf68	79091	broad.mit.edu	37	chr16	8738322	8738322	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgtccaggggatatgagaTcagtgagggataggaaagca	15	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8738322	C	C	8738322	1	2	107	0	1	0	0	0	0	0	0	0	1841	1450	50	5		5	C16orf68	16	8738322	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	6900687	8738322	81616431	730	105329											
XYLT1	64131	broad.mit.edu	37	chr16	17202951	17202951	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatacttaccctgtgcctgGtgctgcactgggtgccatgc	11	13	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17202951	C	C	17202951	1	2	107	0	1	0	0	0	0	0	0	0	17590	1276	44	4		4	XYLT1	16	17202951	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	8464629	17202951	73151802	731	105330											
GP2	2813	broad.mit.edu	37	chr16	20331623	20331623	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactagcctggacggggctGgtcacagatacccagttcct	12	13	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20331623	T	T	20331623	2	4	107	1	0	0	0	0	0	0	0	1	6647	1335	47	2		2	GP2	16	20331623	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3128672	20331623	70023130	732	105331											
IL21R	50615	broad.mit.edu	37	chr16	27445722	27445722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctccagacggtcatctGcatcctggaaatgtggaacc	9	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27445722	T	T	27445722	3	4	107	1	0	0	0	0	1	0	0	0	7741	1319	46	3	110	3	IL21R	16	27445722	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	7114099	27445722	62909031	733	105332											
GTF3C1	2975	broad.mit.edu	37	chr16	27499795	27499795	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcaaaggccaggaagaCcaaaccgaacatagggtagt	12	9	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27499795	G	G	27499795	1	3	107	0	1	0	0	0	0	0	0	0	6937	522	18	4		4	GTF3C1	16	27499795	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	54073	27499795	62854958	734	105333											
CLN3	1201	broad.mit.edu	37	chr16	28488846	28488846	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcccgagtatcaggagagCtggcagaggaagtcatgcag	15	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28488846	T	T	28488846	2	4	107	1	0	0	0	0	0	0	0	1	3575	796	28	4		4	CLN3	16	28488846	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	989051	28488846	61865907	735	105334											
CLN3	1201	broad.mit.edu	37	chr16	28500080	28500080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcacttgaaggatggCtttgggtcagcagtgactga	13	8	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28500080	A	A	28500080	1	1	107	0	1	0	0	0	0	0	0	0	3575	812	28	3		3	CLN3	16	28500080	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	11234	28500080	61854673	736	105335											
SEZ6L2	26470	broad.mit.edu	37	chr16	29897131	29897132	+	Intron	DNP	GC	AG	AG													cacaagctgcctcaccccttGcctgctttcctaacttattt							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	29897132	AG	AG	29897131	1	1	107	0	1	0	0	0	0	0	0	0	14257	1334	46	4		4	SEZ6L2	16	29897131	Intron	DNP	GC	TCGA-44-2657-01A-01D-1105-08	1397051	29897131	60457622	737	105336											
ITGAX	3687	broad.mit.edu	37	chr16	31382904	31382904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaccctgctcattgtcCacccaaggagttcctgtctc	6	18	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31382904	A	A	31382904	1	1	107	0	1	0	0	0	0	0	0	0	7959	609	21	2		2	ITGAX	16	31382904	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1485773	31382904	58971849	738	105337											
ITGAX	3687	broad.mit.edu	37	chr16	31384696	31384696	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggactgtcctaccgctaCgtggcagagggccaggtgca	15	12	0	1	rs146985733		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31384696	T	T	31384696	2	4	107	1	0	0	0	0	0	0	0	1	7959	547	19	4		4	ITGAX	16	31384696	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1792	31384696	58970057	739	105338											
NETO2	81831	broad.mit.edu	37	chr16	47162416	47162416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacttccaagtgatcaaaccGacactcaaatgatggttcta	6	10	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47162416	A	A	47162416	3	1	107	1	0	0	0	0	1	0	0	0	10435	1057	37	4	1300	4	NETO2	16	47162416	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	15777720	47162416	43192337	740	105339											
ABCC11	85320	broad.mit.edu	37	chr16	48201621	48201621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacttcaggccctagagaCctgggtctagccctggttta	10	12	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48201621	A	A	48201621	1	1	107	0	1	0	0	0	0	0	0	0	51	522	18	3		3	ABCC11	16	48201621	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1039205	48201621	42153132	741	105340											
ZNF423	23090	broad.mit.edu	37	chr16	49525160	49525160	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccggcaagccttctgcGgagaggtgtcctgttgagcg	15	11	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49525160	T	T	49525160	1	4	107	0	1	0	0	0	0	0	0	0	18025	1131	39	1		1	ZNF423	16	49525160	3'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	1323539	49525160	40829593	742	105341											
CPNE2	221184	broad.mit.edu	37	chr16	57147136	57147136	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttagcagaatgatttccagCagcctgcgaggtcttggacc	12	10	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57147136	T	T	57147136	1	4	107	0	1	0	0	0	0	0	0	0	3844	725	25	4		4	CPNE2	16	57147136	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	7621976	57147136	33207617	743	105342											
GPR97	222487	broad.mit.edu	37	chr16	57713395	57713395	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatccaaggccacacaccaTagaggtgcacatgaggacct	11	12	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57713395	C	C	57713395	1	2	107	0	1	0	0	0	0	0	0	0	6786	1421	49	5		5	GPR97	16	57713395	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	566259	57713395	32641358	744	105343											
CDH8	1006	broad.mit.edu	37	chr16	61851398	61851398	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataccttataggactggaaGtgatatcagggtcacgagca	11	7	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61851398	A	A	61851398	3	1	107	1	0	0	0	0	1	0	0	0	3146	1029	36	4	1161	4	CDH8	16	61851398	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4138003	61851398	28503355	745	105344											
FAM65A	79567	broad.mit.edu	37	chr16	67573938	67573938	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcagtccccctactgtcaCcccactcaccttcccagatc	3	21	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67573938	G	G	67573938	1	3	107	0	1	0	0	0	0	0	0	0	5650	522	18	4		4	FAM65A	16	67573938	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5722540	67573938	22780815	746	105345											
DUS2L	54920	broad.mit.edu	37	chr16	68071896	68071897	+	Intron	INS	-	T	T													tttctgactcttgtttcctcINStttttttttcaggctgtaac							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68071897	T	T	68071896	6	5	107	0	1	1	1	0	0	0	0	0	4846	928	32	0		0	DUS2L	16	68071896	Intron	INS	-	TCGA-44-2657-01A-01D-1105-08	497958	68071896	22282857	747	105346											
PMFBP1	83449	broad.mit.edu	37	chr16	72188209	72188209	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggagagaatagtaagaagtCtgcaactcctctgtgtgaaa	11	7	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72188209	A	A	72188209	3	1	107	1	0	0	0	0	1	0	0	0	12229	912	32	3	2840	3	PMFBP1	16	72188209	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	4116313	72188209	18166544	748	105347											
KARS	3735	broad.mit.edu	37	chr16	75681566	75681566	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcccgacccaaaagtaaGgaggatagtacgttaatttc	11	8	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75681566	A	A	75681566	1	1	107	0	1	0	0	0	0	0	0	0	8050	1015	35	4		4	KARS	16	75681566	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	3493357	75681566	14673187	749	105348											
SDR42E1	93517	broad.mit.edu	37	chr16	82034492	82034492	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcaaaagataactggacctGaagaaagaagtatgcatcac	9	7	2	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82034492	A	A	82034492	1	1	107	0	1	0	0	0	0	0	0	0	14086	1305	45	4		4	SDR42E1	16	82034492	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	6352926	82034492	8320261	750	105349											
FAM92B	339145	broad.mit.edu	37	chr16	85133738	85133738	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacccctcacccacccacaCgctcacctggctggcgagag	8	19	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85133738	G	G	85133738	1	3	107	0	1	0	0	0	0	0	0	0	5710	551	19	4		4	FAM92B	16	85133738	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3099246	85133738	5221015	751	105350											
JPH3	57338	broad.mit.edu	37	chr16	87678552	87678552	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccccctgcgggccagCaagatccgcgagaaggtgga	13	14	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87678552	G	G	87678552	3	3	107	1	0	0	0	0	1	0	0	0	8032	709	25	4	1077	4	JPH3	16	87678552	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2544814	87678552	2676201	752	105351											
C16orf55	124045	broad.mit.edu	37	chr16	89724600	89724600	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgactgaagacgatgggaCccactgccctgcattcggta	13	12	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89724600	T	T	89724600	1	4	107	0	1	0	0	0	0	0	0	0	1834	522	18	4		4	C16orf55	16	89724600	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2046048	89724600	630153	753	105352											
ABR	29	broad.mit.edu	37	chr17	953256	953256	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaccacctcctggaggCtccctcagcctcgccccggc	10	20	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	953256	G	G	953256	1	3	107	0	1	0	0	0	0	0	0	0	99	812	28	4		4	ABR	17	953256	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08		953256	80241954	754	105353											
RILP	83547	broad.mit.edu	37	chr17	1551212	1551212	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagccaccttcatggcctcGagcagaaggccggggacccg	13	15	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1551212	A	A	1551212	2	1	107	1	0	0	0	0	0	0	0	1	13469	1045	37	4		4	RILP	17	1551212	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	597956	1551212	79643998	755	105354											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2935739	2935739	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtggagtccttcgcctgtCcaaggtgggttgagtgaatg	15	7	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2935739	T	T	2935739	1	4	107	0	1	0	0	0	0	0	0	0	13146	870	30	4		4	RAP1GAP2	17	2935739	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	1384527	2935739	78259471	756	105355											
WSCD1	23302	broad.mit.edu	37	chr17	5993675	5993675	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccggcttggaggccggggcgGagtgttactgcgggaaccgg	20	10	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5993675	C	C	5993675	3	2	107	1	0	0	0	0	1	0	0	0	17533	1175	41	4	587	4	WSCD1	17	5993675	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3057936	5993675	75201535	757	105356											
DHRS7C	201140	broad.mit.edu	37	chr17	9674829	9674829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctccgggacattgagCttctccttcaccccacaggc	7	19	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9674829	A	A	9674829	3	1	107	1	0	0	0	0	1	0	0	0	4537	796	28	3	27	3	DHRS7C	17	9674829	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3681154	9674829	71520381	758	105357											
GAS7	8522	broad.mit.edu	37	chr17	9872870	9872870	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaacccagacacagcaacCactttctacctgggggcaga	8	14	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9872870	T	T	9872870	1	4	107	0	1	0	0	0	0	0	0	0	6312	609	21	4		4	GAS7	17	9872870	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	198041	9872870	71322340	759	105358											
MYH4	4622	broad.mit.edu	37	chr17	10355866	10355866	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttataatcacttctcttaCcaatcttcttttctatgtat	2	10	5	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10355866	T	T	10355866	1	4	107	0	1	0	0	0	0	0	0	0	10131	522	18	4		4	MYH4	17	10355866	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	482996	10355866	70839344	760	105359											
DNAH9	1770	broad.mit.edu	37	chr17	11554419	11554419	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaagaaatgagctatcttGaacccagagagatgaaacac	9	7	1	7			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11554419	T	T	11554419	4	4	107	1	0	0	0	0	0	1	0	0	4648	1291	45	3	2181	3	DNAH9	17	11554419	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1198553	11554419	69640791	761	105360											
MYOCD	93649	broad.mit.edu	37	chr17	12666878	12666878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccctcaccaccagcagcCccagcatcttcaacatcgat	6	19	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12666878	A	A	12666878	3	1	107	1	0	0	0	0	1	0	0	0	10181	623	22	2	2944	2	MYOCD	17	12666878	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1112459	12666878	68528332	762	105361											
TRIM16	10626	broad.mit.edu	37	chr17	15499942	15499942	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggggtctttgtgtctaaaCgtcttcaggcacttccctgt	10	10	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15499942	T	T	15499942	2	4	107	1	0	0	0	0	0	0	0	1	16615	523	19	4		4	TRIM16	17	15499942	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	2833064	15499942	65695268	763	105362											
C17orf76	388341	broad.mit.edu	37	chr17	16347377	16347377	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacccgctccaggtctcggGaggtcagtgggattcccgac	13	14	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16347377	A	A	16347377	3	1	107	1	0	0	0	0	1	0	0	0	1898	1174	41	4	478	4	C17orf76	17	16347377	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	847435	16347377	64847833	764	105363											
FLII	2314	broad.mit.edu	37	chr17	18150366	18150366	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccatcagctgctccgCctgcaggtgagagggacccg	12	16	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18150366	G	G	18150366	3	3	107	1	0	0	0	0	1	0	0	0	5982	753	26	4	1168	4	FLII	17	18150366	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1802989	18150366	63044844	765	105364											
CYTSB	92521	broad.mit.edu	37	chr17	20000193	20000193	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagggcagtaagcaaaccAgtggcctctcggggcaggga	16	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20000193	T	T	20000193	1	4	107	0	1	0	0	0	0	0	0	0	4243	203	7	5		5	CYTSB	17	20000193	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1849827	20000193	61195017	766	105365											
SARM1	23098	broad.mit.edu	37	chr17	26723349	26723349	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgtgacttccatttccatCgtcctttctgaaggaacagc	8	12	1	2	rs145537060	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26723349	T	T	26723349	1	4	107	0	1	0	0	0	0	0	0	0	13954	899	31	4		4	SARM1	17	26723349	3'UTR	SNP	C	TCGA-44-2657-01A-01D-1105-08	6723156	26723349	54471861	767	105366											
NF1	4763	broad.mit.edu	37	chr17	29653005	29653005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtttgttgtttttcctgGctttgcttacgacaacgtct	10	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29653005	T	T	29653005	3	4	107	1	0	0	0	0	1	0	0	0	10451	1203	42	3	5210	3	NF1	17	29653005	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	2929656	29653005	51542205	768	105367											
UTP6	55813	broad.mit.edu	37	chr17	30207635	30207635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatacacagcacagcaCctctcctccttccggccgac	5	19	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30207635	A	A	30207635	3	1	107	1	0	0	0	0	1	0	0	0	17229	506	18	3	905	3	UTP6	17	30207635	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	554630	30207635	50987575	769	105368											
TMEM132E	124842	broad.mit.edu	37	chr17	32955920	32955920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagaaggcccagagggcCccatcaggcagctgccgggg	17	13	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32955920	A	A	32955920	1	1	107	0	1	0	0	0	0	0	0	0	16171	638	22	2		2	TMEM132E	17	32955920	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2748285	32955920	48239290	770	105369											
GAS2L2	246176	broad.mit.edu	37	chr17	34072787	34072787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgctcctgtaggcccaggtCccaggactctctggcctctg	11	16	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34072787	A	A	34072787	3	1	107	1	0	0	0	0	1	0	0	0	6309	855	30	3	917	3	GAS2L2	17	34072787	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1116867	34072787	47122423	771	105370											
KRT35	3886	broad.mit.edu	37	chr17	39635009	39635009	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggactcaaagttagatttcTtgattcagagccccagggtc	11	9	3	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39635009	C	C	39635009	1	2	107	0	1	0	0	0	0	0	0	0	8543	1624	56	5		5	KRT35	17	39635009	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	5562222	39635009	41560201	772	105371											
DHX8	1659	broad.mit.edu	37	chr17	41585642	41585642	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagttttattaatatcaccAtagcccttgtataggacaca	6	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41585642	G	G	41585642	1	3	107	0	1	0	0	0	0	0	0	0	4555	232	8	5		5	DHX8	17	41585642	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1950633	41585642	39609568	773	105372											
NMT1	4836	broad.mit.edu	37	chr17	43181349	43181349	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccatgggctggaggctctGagccctcctcatctgttctg	11	14	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43181349	T	T	43181349	1	4	107	0	1	0	0	0	0	0	0	0	10598	1305	45	3		3	NMT1	17	43181349	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1595707	43181349	38013861	774	105373											
PLCD3	113026	broad.mit.edu	37	chr17	43195505	43195505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcatccctgggcaaaggcCctgtgtgtggacagatgggt	16	10	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43195505	A	A	43195505	3	1	107	1	0	0	0	0	1	0	0	0	12127	637	22	2	1288	2	PLCD3	17	43195505	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	14156	43195505	37999705	775	105374											
FMNL1	752	broad.mit.edu	37	chr17	43323891	43323891	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgatcaagacggtgcccttCacggcccgcaccggcaagcg	13	15	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43323891	T	T	43323891	2	4	107	1	0	0	0	0	0	0	0	1	6009	825	29	4		4	FMNL1	17	43323891	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	128386	43323891	37871319	776	105375											
NFE2L1	4779	broad.mit.edu	37	chr17	46134236	46134237	+	Intron	INS	-	CT	CT													cttgcttcaggactctttcaINSctctcttctgttgtttctgg					rs140826056	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	46134237	CT	CT	46134236	6	5	107	0	1	1	1	0	0	0	0	0	10462	174	6	0		0	NFE2L1	17	46134236	Intron	INS	-	TCGA-44-2657-01A-01D-1105-08	2810345	46134236	35060974	777	105376											
LPO	4025	broad.mit.edu	37	chr17	56344998	56344998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggcccttctccaagagGggtgtcccaaggtcctgcgt	14	13	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56344998	T	T	56344998	1	4	107	0	1	0	0	0	0	0	0	0	9009	1247	43	2		2	LPO	17	56344998	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	10210762	56344998	24850212	778	105377											
MRC2	9902	broad.mit.edu	37	chr17	60765739	60765739	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcaagaggcccagctggtCaccatcacaaaccccttaga	8	15	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60765739	T	T	60765739	2	4	107	1	0	0	0	0	0	0	0	1	9852	813	29	4		4	MRC2	17	60765739	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	4420741	60765739	20429471	779	105378											
ACE	1636	broad.mit.edu	37	chr17	61568578	61568578	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcttgcagggctggacGcccaggaggatgtttaagga	15	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61568578	T	T	61568578	2	4	107	1	0	0	0	0	0	0	0	1	136	1074	38	3		3	ACE	17	61568578	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	802839	61568578	19626632	780	105379											
CCDC47	57003	broad.mit.edu	37	chr17	61842180	61842180	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttcaaattcttcatcatCatatggttcactctcagtat	3	11	7	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61842180	T	T	61842180	3	4	107	1	0	0	0	0	1	0	0	0	2846	826	29	4	1203	4	CCDC47	17	61842180	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	273602	61842180	19353030	781	105380											
SCN4A	6329	broad.mit.edu	37	chr17	62049513	62049513	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactccacattcttggaccaGggaggcgggtcactcatggt	12	11	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62049513	C	C	62049513	2	2	107	1	0	0	0	0	0	0	0	1	14033	987	35	4		4	SCN4A	17	62049513	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	207333	62049513	19145697	782	105381											
PSMD12	5718	broad.mit.edu	37	chr17	65340804	65340804	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacatccgttgcaggactcTcaagggaaccttttcttaat	7	10	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65340804	C	C	65340804	3	2	107	1	0	0	0	0	1	0	0	0	12801	1551	54	5	381	5	PSMD12	17	65340804	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	3291291	65340804	15854406	783	105382											
DNAI2	64446	broad.mit.edu	37	chr17	72281140	72281140	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccgagggtttgggagtatAccagggtgacgtcttccctc	15	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72281140	G	G	72281140	1	3	107	0	1	0	0	0	0	0	0	0	4650	406	14	5		5	DNAI2	17	72281140	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	6940336	72281140	8914070	784	105383											
KIAA0195	9772	broad.mit.edu	37	chr17	73491815	73491815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgtgggctctggagggatGtaggtttcccatgcagggag	17	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73491815	T	T	73491815	1	4	107	0	1	0	0	0	0	0	0	0	8230	1392	48	3		3	KIAA0195	17	73491815	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1210675	73491815	7703395	785	105384											
CARD14	79092	broad.mit.edu	37	chr17	78165189	78165189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggagaaggactccctccGcaggcaggtgttcgagctga	16	10	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78165189	T	T	78165189	3	4	107	1	0	0	0	0	1	0	0	0	2672	1087	38	3	1183	3	CARD14	17	78165189	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4673374	78165189	3030021	786	105385											
MYOM1	8736	broad.mit.edu	37	chr18	3102657	3102657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaaagaaggcactgataCttcgtggaggaaagcaacca	10	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3102657	A	A	3102657	1	1	107	0	1	0	0	0	0	0	0	0	10185	580	20	3		3	MYOM1	18	3102657	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08		3102657	74974591	787	105386											
ANKRD30B	374860	broad.mit.edu	37	chr18	14809944	14809945	+	Intron	DNP	GG	TT	TT													acatttggtaggctttgtcaGgcttgcatataatcaattat							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	14809945	TT	TT	14809944	1	4	107	0	1	0	0	0	0	0	0	0	659	1015	35	2		2	ANKRD30B	18	14809944	Intron	DNP	GG	TCGA-44-2657-01A-01D-1105-08	11707287	14809944	63267304	788	105387											
MIB1	57534	broad.mit.edu	37	chr18	19405788	19405788	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacagttaaatgcttttcAttggtaaaattacagtcatg	6	5	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19405788	G	G	19405788	1	3	107	0	1	0	0	0	0	0	0	0	9659	232	8	5		5	MIB1	18	19405788	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	4595844	19405788	58671460	789	105388											
RBBP8	5932	broad.mit.edu	37	chr18	20565057	20565057	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattttaaaggtattttccAtataattttgtttatattac	3	3	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20565057	G	G	20565057	1	3	107	0	1	0	0	0	0	0	0	0	13213	232	8	5		5	RBBP8	18	20565057	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1159269	20565057	57512191	790	105389											
DSC2	1824	broad.mit.edu	37	chr18	28648013	28648013	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatgcttctgctagtgtccTaaatttgggctccaaattat	8	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28648013	C	C	28648013	3	2	107	1	0	0	0	0	1	0	0	0	4806	1521	53	5	35	5	DSC2	18	28648013	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	8082956	28648013	49429235	791	105390											
B4GALT6	9331	broad.mit.edu	37	chr18	29206276	29206276	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actggacttcacctctatggTgatgaggaattgacttgtat	10	7	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29206276	A	A	29206276	3	1	107	1	0	0	0	0	1	0	0	0	1280	1696	59	5	185	5	B4GALT6	18	29206276	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	558263	29206276	48870972	792	105391											
KIAA1012	22878	broad.mit.edu	37	chr18	29433987	29433987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgagaataaaattcagaCactgctaccaaagtcaatgt	7	8	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29433987	A	A	29433987	1	1	107	0	1	0	0	0	0	0	0	0	8274	493	17	3		3	KIAA1012	18	29433987	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	227711	29433987	48643261	793	105392											
SETBP1	26040	broad.mit.edu	37	chr18	42530897	42530897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttgctgcaaaacgaaGgtggacttgcagcaaaccaa	9	8	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42530897	T	T	42530897	3	4	107	1	0	0	0	0	1	0	0	0	14242	1000	35	2	1795	2	SETBP1	18	42530897	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	13096910	42530897	35546351	794	105393											
ONECUT2	9480	broad.mit.edu	37	chr18	55103683	55103683	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccacaacgcgcagcagagTctgcccaactacggtccgcc	9	18	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55103683	C	C	55103683	2	2	107	1	0	0	0	0	0	0	0	1	10963	1664	58	5		5	ONECUT2	18	55103683	Silent	SNP	T	TCGA-44-2657-01A-01D-1105-08	12572786	55103683	22973565	795	105394											
CCBE1	147372	broad.mit.edu	37	chr18	57122238	57122238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggatgcaagccagaccCagagagacagcatcgggaag	15	10	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57122238	A	A	57122238	1	1	107	0	1	0	0	0	0	0	0	0	2757	609	21	2		2	CCBE1	18	57122238	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2018555	57122238	20955010	796	105395											
SERPINB13	5275	broad.mit.edu	37	chr18	61262397	61262397	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtttgtgcttctgcccaaCgacatcgatggcctggagaa	11	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61262397	T	T	61262397	2	4	107	1	0	0	0	0	0	0	0	1	14213	535	19	4		4	SERPINB13	18	61262397	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	4140159	61262397	16814851	797	105396											
CBLN2	147381	broad.mit.edu	37	chr18	70205991	70205992	+	Missense_Mutation	DNP	CC	AA	AA													aagcaagatcaaagtggttgCcaatatttactaatacctga							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70205992	AA	AA	70205991	3	1	107	1	0	0	0	0	1	0	0	0	2731	739	26	3	308	3	CBLN2	18	70205991	Missense_Mutation	DNP	CC	TCGA-44-2657-01A-01D-1105-08	8943594	70205991	7871257	798	105397											
GALR1	2587	broad.mit.edu	37	chr18	74962576	74962576	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccccgccccggagcccggGccgctgttcggcatcggcgt	14	20	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74962576	A	A	74962576	2	1	107	1	0	0	0	0	0	0	0	1	6289	1190	42	4		4	GALR1	18	74962576	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	4756585	74962576	3114672	799	105398											
NFIC	4782	broad.mit.edu	37	chr19	3434549	3434549	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcatctcatccttcaaaAcccagccagccccacgtgcc	4	19	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3434549	C	C	3434549	1	2	107	0	1	0	0	0	0	0	0	0	10467	58	2	5		5	NFIC	19	3434549	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08		3434549	55694434	800	105399											
GIPC3	126326	broad.mit.edu	37	chr19	3589536	3589536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcgttctgggggggctGccacagtggaggaagcggtg	20	8	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3589536	T	T	3589536	3	4	107	1	0	0	0	0	1	0	0	0	6458	1319	46	3	702	3	GIPC3	19	3589536	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	154987	3589536	55539447	801	105400											
LONP1	9361	broad.mit.edu	37	chr19	5705941	5705941	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaggcccagctccttcttGatgatctttagctgctcctg	8	14	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5705941	A	A	5705941	2	1	107	1	0	0	0	0	0	0	0	1	8979	1280	45	4		4	LONP1	19	5705941	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	2116405	5705941	53423042	802	105401											
ZNF699	374879	broad.mit.edu	37	chr19	9407936	9407936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaattttaagattctctcCtgaggcactttctctttctc	4	10	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9407936	A	A	9407936	1	1	107	0	1	0	0	0	0	0	0	0	18228	696	24	2		2	ZNF699	19	9407936	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3701995	9407936	49721047	803	105402											
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10220370	10220370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accccgactcccaggagctgGacttccgccactagtgagtg	11	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10220370	T	T	10220370	3	4	107	1	0	0	0	0	1	0	0	0	12385	1174	41	3	599	3	PPAN-P2RY11	19	10220370	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	812434	10220370	48908613	804	105403											
RTBDN	83546	broad.mit.edu	37	chr19	12945975	12945975	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggagctgattggtcagtGcagcaggaaaaatggtgatc	16	5	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12945975	A	A	12945975	1	1	107	0	1	0	0	0	0	0	0	0	13828	1334	46	4		4	RTBDN	19	12945975	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	2725605	12945975	46183008	805	105404											
CACNA1A	773	broad.mit.edu	37	chr19	13563581	13563581	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcgcataacaaggggagGgagaacacaagggctcagcc	15	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13563581	A	A	13563581	1	1	107	0	1	0	0	0	0	0	0	0	2564	1247	43	4		4	CACNA1A	19	13563581	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	617606	13563581	45565402	806	105405											
EMR3	84658	broad.mit.edu	37	chr19	14755137	14755138	+	Intron	INS	-	T	T													tctttgtctttctttctttcINSttttttttttttggagacaa							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14755138	T	T	14755137	6	5	107	0	1	1	1	0	0	0	0	0	5148	928	32	0		0	EMR3	19	14755137	Intron	INS	-	TCGA-44-2657-01A-01D-1105-08	1191556	14755137	44373846	807	105406											
SLC1A6	6511	broad.mit.edu	37	chr19	15075095	15075095	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaagctcccaccaccctccGaatctccttgatcaaactgt	4	18	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15075095	C	C	15075095	1	2	107	0	1	0	0	0	0	0	0	0	14549	1073	37	4		4	SLC1A6	19	15075095	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	319958	15075095	44053888	808	105407											
CYP4F12	66002	broad.mit.edu	37	chr19	15790985	15790985	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaagtgctggtaggcaGccttgccctatacctgaagt	14	9	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15790985	A	A	15790985	1	1	107	0	1	0	0	0	0	0	0	0	4220	986	34	4		4	CYP4F12	19	15790985	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	715890	15790985	43337998	809	105408											
OR10H4	126541	broad.mit.edu	37	chr19	16060156	16060156	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttggcttcactcactcCttccttctcctggtcatggg	8	13	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16060156	A	A	16060156	2	1	107	1	0	0	0	0	0	0	0	1	11002	668	24	2		2	OR10H4	19	16060156	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	269171	16060156	43068827	810	105409											
FAM32A	26017	broad.mit.edu	37	chr19	16301759	16301759	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcccaaagtcagctggaCgaagtagccgcctgccccca	9	16	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16301759	T	T	16301759	3	4	107	1	0	0	0	0	1	0	0	0	5603	536	19	4	346	4	FAM32A	19	16301759	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	241603	16301759	42827224	811	105410											
UNC13A	23025	broad.mit.edu	37	chr19	17759401	17759401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttcgaagttgtgtggcGtcgtgcacgagatggggtag	16	7	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17759401	T	T	17759401	3	4	107	1	0	0	0	0	1	0	0	0	17110	1145	40	3	3568	3	UNC13A	19	17759401	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1457642	17759401	41369582	812	105411											
JAK3	3718	broad.mit.edu	37	chr19	17943472	17943472	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccagggcacctgtattgtCgcctagcgggtcatagcggc	13	13	1	0	rs1052526		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17943472	T	T	17943472	3	4	107	1	0	0	0	0	1	0	0	0	8009	884	31	4	862	4	JAK3	19	17943472	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	184071	17943472	41185511	813	105412											
JAK3	3718	broad.mit.edu	37	chr19	17952393	17952393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagcccagtgaaacccgaGggtgccggtcccgccctcgg	14	16	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17952393	A	A	17952393	1	1	107	0	1	0	0	0	0	0	0	0	8009	1015	35	4		4	JAK3	19	17952393	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	8921	17952393	41176590	814	105413											
NCAN	1463	broad.mit.edu	37	chr19	19360467	19360467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacagggatgagccctcgCgtctggcctctttcctctac	10	14	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19360467	T	T	19360467	1	4	107	0	1	0	0	0	0	0	0	0	10299	783	27	4		4	NCAN	19	19360467	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1408074	19360467	39768516	815	105414											
GATAD2A	54815	broad.mit.edu	37	chr19	19576209	19576209	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgagcgcttgaacgggacCcaacagaggacgatgtggag	15	9	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19576209	G	G	19576209	3	3	107	1	0	0	0	0	1	0	0	0	6322	623	22	4	57	4	GATAD2A	19	19576209	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	215742	19576209	39552774	816	105415											
CILP2	148113	broad.mit.edu	37	chr19	19655874	19655874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacccagccctacctggaCaggctggggtaccgtcggac	13	15	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19655874	A	A	19655874	3	1	107	1	0	0	0	0	1	0	0	0	3461	477	17	3	2550	3	CILP2	19	19655874	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	79665	19655874	39473109	817	105416											
ZNF626	199777	broad.mit.edu	37	chr19	20808148	20808148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgcttaaaagctttgcCacattctatatatttgaaag	6	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20808148	A	A	20808148	3	1	107	1	0	0	0	0	1	0	0	0	18177	594	21	2	1055	2	ZNF626	19	20808148	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1152274	20808148	38320835	818	105417											
ZNF626	199777	broad.mit.edu	37	chr19	20829050	20829050	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaaataaataaataaaatCtatagggtatattatgtact	4	2	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20829050	A	A	20829050	1	1	107	0	1	0	0	0	0	0	0	0	18177	928	32	3		3	ZNF626	19	20829050	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	20902	20829050	38299933	819	105418											
CD22	933	broad.mit.edu	37	chr19	35822411	35822411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgggaagagagagaggCtgcccccgcagggctctcag	16	11	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35822411	A	A	35822411	1	1	107	0	1	0	0	0	0	0	0	0	3015	812	28	3		3	CD22	19	35822411	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	14993361	35822411	23306572	820	105419											
ARHGAP33	115703	broad.mit.edu	37	chr19	36271365	36271365	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgacatgccacccacagagGatcggagctggtggcggggc	16	12	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36271365	C	C	36271365	3	2	107	1	0	0	0	0	1	0	0	0	884	1174	41	4	697	4	ARHGAP33	19	36271365	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	448954	36271365	22857618	821	105420											
NPHS1	4868	broad.mit.edu	37	chr19	36322519	36322519	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcaccctcgggtctccacCctggcagggaagggtctctc	11	15	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36322519	T	T	36322519	1	4	107	0	1	0	0	0	0	0	0	0	10677	638	22	4		4	NPHS1	19	36322519	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	51154	36322519	22806464	822	105421											
RYR1	6261	broad.mit.edu	37	chr19	39075606	39075606	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgtttcacatgtacgtGggtgtccgggctggcggagg	16	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39075606	T	T	39075606	2	4	107	1	0	0	0	0	0	0	0	1	13879	1335	47	2		2	RYR1	19	39075606	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	2753087	39075606	20053377	823	105422											
NCCRP1	342897	broad.mit.edu	37	chr19	39691004	39691004	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggttcgaggacagccggctGgatgcgtgcgtctatgagct	16	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39691004	C	C	39691004	2	2	107	1	0	0	0	0	0	0	0	1	10308	1335	47	4		4	NCCRP1	19	39691004	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	615398	39691004	19437979	824	105423											
ZNF780A	284323	broad.mit.edu	37	chr19	40580836	40580836	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaaaagccttcccacactCcttacattcatagggcttct	4	14	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40580836	A	A	40580836	4	1	107	1	0	0	0	0	0	1	0	0	18281	864	30	3	543	3	ZNF780A	19	40580836	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	889832	40580836	18548147	825	105424											
ADCK4	79934	broad.mit.edu	37	chr19	41216077	41216077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacatgagtgcccgtttgCctggggtgcccccagcctaa	12	13	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41216077	A	A	41216077	1	1	107	0	1	0	0	0	0	0	0	0	290	754	26	3		3	ADCK4	19	41216077	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	635241	41216077	17912906	826	105425											
HNRNPUL1	11100	broad.mit.edu	37	chr19	41800371	41800371	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggataagatgcgggtaagGccagccactggactctcctt	12	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41800371	A	A	41800371	1	1	107	0	1	0	0	0	0	0	0	0	7341	1218	42	4		4	HNRNPUL1	19	41800371	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	584294	41800371	17328612	827	105426											
PSG6	5675	broad.mit.edu	37	chr19	43571244	43571244	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgtgaaagcaagcctaGttctccgaggctctctttaa	11	9	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43571244	T	T	43571244	1	4	107	0	1	0	0	0	0	0	0	0	12765	1044	36	3		3	PSG6	19	43571244	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1770873	43571244	15557739	828	105427											
ZNF223	7766	broad.mit.edu	37	chr19	44570092	44570092	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgcaaaccagaaaccaGggtgcacttggaaaacacaa	8	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44570092	C	C	44570092	1	2	107	0	1	0	0	0	0	0	0	0	17903	1015	35	4		4	ZNF223	19	44570092	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	998848	44570092	14558891	829	105428											
LIG1	3978	broad.mit.edu	37	chr19	48634422	48634422	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctccccgccttccagggCgtggatctgtcacgatggga	12	15	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48634422	T	T	48634422	3	4	107	1	0	0	0	0	1	0	0	0	8853	768	27	4	1067	4	LIG1	19	48634422	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	4064330	48634422	10494561	830	105429											
RUVBL2	10856	broad.mit.edu	37	chr19	49517961	49517961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggagtggcatggtggctgGgcctacaggagagagggctg	21	7	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49517961	T	T	49517961	1	4	107	0	1	0	0	0	0	0	0	0	13864	1247	43	2		2	RUVBL2	19	49517961	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	883539	49517961	9611022	831	105430											
KCNA7	3743	broad.mit.edu	37	chr19	49573799	49573799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctggcccaagatttgcaGgccctttgagtgccgggaca	13	12	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49573799	T	T	49573799	3	4	107	1	0	0	0	0	1	0	0	0	8078	991	35	2	482	2	KCNA7	19	49573799	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	55838	49573799	9555184	832	105431											
PIH1D1	55011	broad.mit.edu	37	chr19	49950836	49950836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggactcttggggtctgacCacaccccgcaggcttggctc	12	15	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49950836	A	A	49950836	1	1	107	0	1	0	0	0	0	0	0	0	12001	609	21	2		2	PIH1D1	19	49950836	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	377037	49950836	9178147	833	105432											
SHANK1	50944	broad.mit.edu	37	chr19	51215139	51215139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctggttcccagccccaGccccttggatgcctcaggga	11	16	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51215139	T	T	51215139	1	4	107	0	1	0	0	0	0	0	0	0	14377	986	34	3		3	SHANK1	19	51215139	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1264303	51215139	7913844	834	105433											
KLK15	55554	broad.mit.edu	37	chr19	51330248	51330248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggtagcaccgcggggcGcacctgggggttcaggcgtg	20	11	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51330248	T	T	51330248	3	4	107	1	0	0	0	0	1	0	0	0	8474	1087	38	3	415	3	KLK15	19	51330248	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	115109	51330248	7798735	835	105434											
HAS1	3036	broad.mit.edu	37	chr19	52222512	52222512	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaggctgtgtacatgacctCgcgcttgccgccccagcgct	12	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52222512	A	A	52222512	4	1	107	1	0	0	0	0	0	1	0	0	7027	893	31	3	1103	3	HAS1	19	52222512	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	892264	52222512	6906471	836	105435											
LILRB2	10288	broad.mit.edu	37	chr19	54779996	54779996	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctgaggtcccacagtgtGgggtgagatgatctcaccct	12	12	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54779996	C	C	54779996	1	2	107	0	1	0	0	0	0	0	0	0	8863	1363	47	4		4	LILRB2	19	54779996	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2557484	54779996	4348987	837	105436											
LILRA2	11027	broad.mit.edu	37	chr19	55087690	55087690	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcgggagggtccacaggGgagggtccagcccatgggag	20	9	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55087690	A	A	55087690	1	1	107	0	1	0	0	0	0	0	0	0	8857	1247	43	4		4	LILRA2	19	55087690	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	307694	55087690	4041293	838	105437											
KIR3DL1	3811	broad.mit.edu	37	chr19	55350859	55350859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggaagatcccccctgaGgaaactgccccttctccttc	7	16	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55350859	T	T	55350859	1	4	107	0	1	0	0	0	0	0	0	0	8391	1015	35	2		2	KIR3DL1	19	55350859	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	263169	55350859	3778124	839	105438											
BRSK1	84446	broad.mit.edu	37	chr19	55816254	55816254	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatccgcaacagcttcctGggctcccctcgctttcaccg	7	19	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55816254	A	A	55816254	2	1	107	1	0	0	0	0	0	0	0	1	1532	1335	47	4		4	BRSK1	19	55816254	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	465395	55816254	3312729	840	105439											
EPN1	29924	broad.mit.edu	37	chr19	56203235	56203235	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccccacggctgcccccacctCggacccctggggcggccccc	11	24	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56203235	G	G	56203235	3	3	107	1	0	0	0	0	1	0	0	0	5227	893	31	4	1241	4	EPN1	19	56203235	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	386981	56203235	2925748	841	105440											
NLRP8	126205	broad.mit.edu	37	chr19	56491020	56491020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctgggtgtagtggtgCatgcctgtaatcccagcact	14	10	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56491020	A	A	56491020	1	1	107	0	1	0	0	0	0	0	0	0	10578	725	25	3		3	NLRP8	19	56491020	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	287785	56491020	2637963	842	105441											
ZNF773	374928	broad.mit.edu	37	chr19	58015904	58015904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcatcagtggttctggGgcagggtctctcttctgaga	16	8	5	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58015904	T	T	58015904	1	4	107	0	1	0	0	0	0	0	0	0	18275	1247	43	2		2	ZNF773	19	58015904	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1524884	58015904	1113079	843	105442											
PSMF1	9491	broad.mit.edu	37	chr20	1145169	1145169	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggacctgatggcagcttGgttcagtgtggcagcaatga	15	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1145169	A	A	1145169	1	1	107	0	1	0	0	0	0	0	0	0	12816	1363	47	4		4	PSMF1	20	1145169	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08		1145169	61880351	844	105443											
TGM6	343641	broad.mit.edu	37	chr20	2380896	2380896	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcgcctgctgtggaagccAggcccctctctcaggggcca	15	15	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2380896	G	G	2380896	1	3	107	0	1	0	0	0	0	0	0	0	15957	203	7	5		5	TGM6	20	2380896	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1235727	2380896	60644624	845	105444											
ZNF343	79175	broad.mit.edu	37	chr20	2464182	2464182	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaggaggagtgatttccgActaaagcctcggccacactc	10	12	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2464182	G	G	2464182	2	3	107	1	0	0	0	0	0	0	0	1	17984	272	10	5		5	ZNF343	20	2464182	Silent	SNP	A	TCGA-44-2657-01A-01D-1105-08	83286	2464182	60561338	846	105445											
NOP56	10528	broad.mit.edu	37	chr20	2636619	2636619	+	Frame_Shift_Del	DEL	A	-	-													cacatgctggcagcctcaccAacctggccaagtatccagca							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2636619	-	-	2636619	7	5	107	1	0	1	0	1	0	0	0	0	10634	130	5	0	979	0	NOP56	20	2636619	Frame_Shift_Del	DEL	A	TCGA-44-2657-01A-01D-1105-08	172437	2636619	60388901	847	105446											
CPXM1	56265	broad.mit.edu	37	chr20	2777425	2777425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatcccatcatggtacaGgaggggagcggcagcagagc	17	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2777425	T	T	2777425	1	4	107	0	1	0	0	0	0	0	0	0	3869	1015	35	2		2	CPXM1	20	2777425	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	140806	2777425	60248095	848	105447											
PLCB4	5332	broad.mit.edu	37	chr20	9416206	9416206	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgggtttttttttcccctaGatatcgtggatgctttatca	8	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9416206	T	T	9416206	5	4	107	1	0	0	0	0	0	0	1	0	12125	956	33	3	2626	3	PLCB4	20	9416206	Splice_Site	SNP	G	TCGA-44-2657-01A-01D-1105-08	6638781	9416206	53609314	849	105448											
PLCB4	5332	broad.mit.edu	37	chr20	9433936	9433936	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaagttatgccagcccTatatggtgtgagccatgcta	12	8	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9433936	C	C	9433936	1	2	107	0	1	0	0	0	0	0	0	0	12125	1537	53	5		5	PLCB4	20	9433936	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	17730	9433936	53591584	850	105449											
PAK7	57144	broad.mit.edu	37	chr20	9523281	9523281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgtcccggatcctccgCatcgcctggaggggaggctc	13	14	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9523281	A	A	9523281	3	1	107	1	0	0	0	0	1	0	0	0	11499	710	25	3	211	3	PAK7	20	9523281	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	89345	9523281	53502239	851	105450											
BTBD3	22903	broad.mit.edu	37	chr20	11903469	11903469	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaggagccagacctgaccCagcgttgctgggaggtgatt	15	10	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11903469	T	T	11903469	4	4	107	1	0	0	0	0	0	1	0	0	1554	595	21	4	738	4	BTBD3	20	11903469	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2380188	11903469	51122051	852	105451											
C20orf26	26074	broad.mit.edu	37	chr20	20270909	20270909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttactcacctcattaacaaTtaattttaaatggaaaactt	3	7	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20270909	A	A	20270909	1	1	107	0	1	0	0	0	0	0	0	0	2128	1508	52	5		5	C20orf26	20	20270909	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	8367440	20270909	42754611	853	105452											
CST2	1470	broad.mit.edu	37	chr20	23805992	23805992	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaacaggatgcacggacAgcgcccccatcagttcatgc	10	13	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23805992	T	T	23805992	1	4	107	0	1	0	0	0	0	0	0	0	4006	203	7	5		5	CST2	20	23805992	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	3535083	23805992	39219528	854	105453											
NINL	22981	broad.mit.edu	37	chr20	25443014	25443014	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccctgcggctgaggccaCccacctgctgctgcccactg	11	19	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25443014	A	A	25443014	1	1	107	0	1	0	0	0	0	0	0	0	10515	522	18	3		3	NINL	20	25443014	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1637022	25443014	37582506	855	105454											
DEFB123	245936	broad.mit.edu	37	chr20	30037810	30037810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaggactgatactgtctcCcttctttctgctttgtgtca	8	10	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30037810	A	A	30037810	1	1	107	0	1	0	0	0	0	0	0	0	4448	638	22	2		2	DEFB123	20	30037810	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	4594796	30037810	32987710	856	105455											
DLGAP4	22839	broad.mit.edu	37	chr20	35060939	35060939	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacccccgcccgcaccCccagccacctgccccagcct	5	28	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35060939	A	A	35060939	2	1	107	1	0	0	0	0	0	0	0	1	4602	610	22	2		2	DLGAP4	20	35060939	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	5023129	35060939	27964581	857	105456											
RBL1	5933	broad.mit.edu	37	chr20	35632118	35632119	+	Missense_Mutation	DNP	CC	AA	AA													accttaccttagaagggctgCcattgaacttgtacagcaga							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	35632119	AA	AA	35632118	3	1	107	1	0	0	0	0	1	0	0	0	13217	739	26	3	200	3	RBL1	20	35632118	Missense_Mutation	DNP	CC	TCGA-44-2657-01A-01D-1105-08	571179	35632118	27393402	858	105457											
C20orf132	140699	broad.mit.edu	37	chr20	35737068	35737068	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtacttcgataaaaggcCtaaaggcaggataaagtcag	10	7	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35737068	A	A	35737068	5	1	107	1	0	0	0	0	0	0	1	0	2108	695	24	2	222	2	C20orf132	20	35737068	Splice_Site	SNP	C	TCGA-44-2657-01A-01D-1105-08	104950	35737068	27288452	859	105458											
KIAA1755	85449	broad.mit.edu	37	chr20	36868181	36868181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcagaagatgggctttctAaggggaaaacgtctcctctt	11	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36868181	T	T	36868181	1	4	107	0	1	0	0	0	0	0	0	0	8327	377	13	5		5	KIAA1755	20	36868181	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	1131113	36868181	26157339	860	105459											
KIAA1755	85449	broad.mit.edu	37	chr20	36869629	36869629	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctcctctagtgccccagAagtacacccactggatgtgc	8	14	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36869629	C	C	36869629	3	2	107	1	0	0	0	0	1	0	0	0	8327	246	9	5	2746	5	KIAA1755	20	36869629	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	1448	36869629	26155891	861	105460											
SLC32A1	140679	broad.mit.edu	37	chr20	37353584	37353584	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggagagccctgcggggacGagggcgctgaagcgcccgtc	19	12	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37353584	A	A	37353584	3	1	107	1	0	0	0	0	1	0	0	0	14679	1059	37	4	219	4	SLC32A1	20	37353584	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	483955	37353584	25671936	862	105461											
PPP1R16B	26051	broad.mit.edu	37	chr20	37464841	37464841	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcccctctgtgccttggcGgccacgcagctgccttggcc	13	17	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37464841	A	A	37464841	1	1	107	0	1	0	0	0	0	0	0	0	12467	1131	39	4		4	PPP1R16B	20	37464841	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	111257	37464841	25560679	863	105462											
LPIN3	64900	broad.mit.edu	37	chr20	39976177	39976177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccatgtccctgccaccGctttccatttgcaggtagac	9	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39976177	T	T	39976177	1	4	107	0	1	0	0	0	0	0	0	0	9007	1102	38	3		3	LPIN3	20	39976177	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2511336	39976177	23049343	864	105463											
MYBL2	4605	broad.mit.edu	37	chr20	42340215	42340215	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatcgaggacgacatcaggCccgagaagcagaagaggaag	14	9	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42340215	T	T	42340215	3	4	107	1	0	0	0	0	1	0	0	0	10104	739	26	4	1735	4	MYBL2	20	42340215	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2364038	42340215	20685305	865	105464											
JPH2	57158	broad.mit.edu	37	chr20	42815297	42815297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctttcccccctcccagcCcccgcagtacgcccctccat	6	24	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42815297	A	A	42815297	3	1	107	1	0	0	0	0	1	0	0	0	8031	623	22	2	2076	2	JPH2	20	42815297	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	475082	42815297	20210223	866	105465											
WISP2	8839	broad.mit.edu	37	chr20	43353577	43353577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctgggcaagtgctgccCtgagtgggtgtgcggccaag	18	10	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43353577	A	A	43353577	3	1	107	1	0	0	0	0	1	0	0	0	17500	681	24	2	486	2	WISP2	20	43353577	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	538280	43353577	19671943	867	105466											
SEMG2	6407	broad.mit.edu	37	chr20	43851907	43851907	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtcatgaacaaaaaggcaGatacaaacaggaatccagtg	9	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43851907	T	T	43851907	3	4	107	1	0	0	0	0	1	0	0	0	14158	942	33	3	1640	3	SEMG2	20	43851907	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	498330	43851907	19173613	868	105467											
SLC12A5	57468	broad.mit.edu	37	chr20	44668973	44668973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtagtgcaaagggctgCtgacttaggtatctgttctt	12	7	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44668973	A	A	44668973	1	1	107	0	1	0	0	0	0	0	0	0	14499	812	28	3		3	SLC12A5	20	44668973	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	817066	44668973	18356547	869	105468											
SLC35C2	51006	broad.mit.edu	37	chr20	44983613	44983613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctggaggcctgcagggCgggggacaggcaccatcagg	18	10	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44983613	A	A	44983613	1	1	107	0	1	0	0	0	0	0	0	0	14694	783	27	3		3	SLC35C2	20	44983613	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	314640	44983613	18041907	870	105469											
PREX1	57580	broad.mit.edu	37	chr20	47262612	47262612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctacggaagcaaagacCttgaagtcaaagatacaggc	10	10	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47262612	A	A	47262612	1	1	107	0	1	0	0	0	0	0	0	0	12582	696	24	2		2	PREX1	20	47262612	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2278999	47262612	15762908	871	105470											
PTGIS	5740	broad.mit.edu	37	chr20	48140893	48140893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgtcactcattgagggtGgggagttcctgtgggaaaga	16	5	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48140893	T	T	48140893	1	4	107	0	1	0	0	0	0	0	0	0	12858	1363	47	2		2	PTGIS	20	48140893	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	878281	48140893	14884627	872	105471											
KCNG1	3755	broad.mit.edu	37	chr20	49626462	49626462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcgcacatctcgcgcagCagccgcagcttgcccgcgcg	13	18	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49626462	A	A	49626462	2	1	107	1	0	0	0	0	0	0	0	1	8097	697	25	3		3	KCNG1	20	49626462	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	1485569	49626462	13399058	873	105472											
KCNG1	3755	broad.mit.edu	37	chr20	49626477	49626477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcagccgcagcttgccCgcgcgcaggaaggtcaggat	15	14	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49626477	A	A	49626477	2	1	107	1	0	0	0	0	0	0	0	1	8097	639	23	1		1	KCNG1	20	49626477	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	15	49626477	13399043	874	105473											
TSHZ2	128553	broad.mit.edu	37	chr20	51872757	51872757	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatttctgaaaaacatggaCaaaggccaccccatctttta	5	10	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51872757	T	T	51872757	2	4	107	1	0	0	0	0	0	0	0	1	16749	477	17	4		4	TSHZ2	20	51872757	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	2246280	51872757	11152763	875	105474											
CASS4	57091	broad.mit.edu	37	chr20	55028256	55028256	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtagtggctactaagatgCtgagactctttccatagtgt	11	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55028256	T	T	55028256	1	4	107	0	1	0	0	0	0	0	0	0	2709	812	28	4		4	CASS4	20	55028256	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3155499	55028256	7997264	876	105475											
GATA5	140628	broad.mit.edu	37	chr20	61048547	61048547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaggtagtggccggtgCcgtctcggcgccacagcggt	16	13	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61048547	A	A	61048547	3	1	107	1	0	0	0	0	1	0	0	0	6319	739	26	3	602	3	GATA5	20	61048547	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	6020291	61048547	1976973	877	105476											
C20orf20	55257	broad.mit.edu	37	chr20	61430122	61430122	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggcctccagggaggtgtgAgggtccagcgcagaccccgc	17	14	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61430122	T	T	61430122	1	4	107	0	1	0	0	0	0	0	0	0	2125	319	11	5		5	C20orf20	20	61430122	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	381575	61430122	1595398	878	105477											
ARFGAP1	55738	broad.mit.edu	37	chr20	61907501	61907501	+	Frame_Shift_Del	DEL	G	-	-													cagtgtgacctacggcatctGgatctgcctggagtgctcgg							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61907501	-	-	61907501	7	5	107	1	0	1	0	1	0	0	0	0	851	1357	47	0	125	0	ARFGAP1	20	61907501	Frame_Shift_Del	DEL	G	TCGA-44-2657-01A-01D-1105-08	477379	61907501	1118019	879	105478											
PRPF6	24148	broad.mit.edu	37	chr20	62612636	62612636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgttcctagggatgcccgCgcccctcggctacgtgccgg	13	17	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62612636	T	T	62612636	3	4	107	1	0	0	0	0	1	0	0	0	12680	768	27	4	40	4	PRPF6	20	62612636	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	705135	62612636	412884	880	105479											
TPTE	7179	broad.mit.edu	37	chr21	10909590	10909591	+	Intron	INS	-	A	A													caggtagcaccttacatcccINSaataaaggcttccactctca							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10909591	A	A	10909590	6	5	107	0	1	1	1	0	0	0	0	0	16554	609	21	0		0	TPTE	21	10909590	Intron	INS	-	TCGA-44-2657-01A-01D-1105-08		10909590	37220305	881	105480											
TPTE	7179	broad.mit.edu	37	chr21	10998176	10998176	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaattaaccaagtgttgatGatattgaaatgtctacctca	6	6	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10998176	T	T	10998176	1	4	107	0	1	0	0	0	0	0	0	0	16554	1305	45	3		3	TPTE	21	10998176	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	88586	10998176	37131719	882	105481											
TPTE	7179	broad.mit.edu	37	chr21	10998190	10998190	+	Intron	DEL	T	-	-													gttgatgatattgaaatgtcTacctcaggcactatacctgg							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10998190	-	-	10998190	6	5	107	0	1	1	0	1	0	0	0	0	16554	1537	53	0		0	TPTE	21	10998190	Intron	DEL	T	TCGA-44-2657-01A-01D-1105-08	14	10998190	37131705	883	105482											
BAGE2	85319	broad.mit.edu	37	chr21	11038686	11038686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgattttatagaattGttccaatatcttttctgtca	4	8	4	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11038686	A	A	11038686	1	1	107	0	1	0	0	0	0	0	0	0	1297	1392	48	4		4	BAGE2	21	11038686	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	40496	11038686	37091209	884	105483											
BAGE2	85319	broad.mit.edu	37	chr21	11098888	11098888	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttctcctggtcctctaaGccgggaacagagcagctcag	10	15	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11098888	T	T	11098888	1	4	107	0	1	0	0	0	0	0	0	0	1297	986	34	3		3	BAGE2	21	11098888	5'UTR	SNP	G	TCGA-44-2657-01A-01D-1105-08	60202	11098888	37031007	885	105484											
USP25	29761	broad.mit.edu	37	chr21	17181066	17181066	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggctctaggtttgatgttAcaacatctagtatttttttt	7	6	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17181066	T	T	17181066	1	4	107	0	1	0	0	0	0	0	0	0	17182	406	14	5		5	USP25	21	17181066	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	6082178	17181066	30948829	886	105485											
CYYR1	116159	broad.mit.edu	37	chr21	27945240	27945240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagacccctggacgcacgGgtagcctcggagcgtccatc	13	15	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27945240	T	T	27945240	3	4	107	1	0	0	0	0	1	0	0	0	4244	1232	43	2	460	2	CYYR1	21	27945240	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	10764174	27945240	20184655	887	105486											
ADAMTS1	9510	broad.mit.edu	37	chr21	28210696	28210696	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgagacatatttttttcCcagacctgttgaaaggccca	7	9	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28210696	A	A	28210696	1	1	107	0	1	0	0	0	0	0	0	0	255	638	22	2		2	ADAMTS1	21	28210696	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	265456	28210696	19919199	888	105487											
GRIK1	2897	broad.mit.edu	37	chr21	30934151	30934151	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagcccacatcttctcaTaggtggagatttttgatttc	8	8	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30934151	A	A	30934151	3	1	107	1	0	0	0	0	1	0	0	0	6839	1406	49	5	778	5	GRIK1	21	30934151	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	2723455	30934151	17195744	889	105488											
KRTAP13-4	284827	broad.mit.edu	37	chr21	31802579	31802579	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtacactcagctgaactcCcatctctcatcagcatgtcc	6	15	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31802579	A	A	31802579	1	1	107	0	1	0	0	0	0	0	0	0	8596	638	22	2		2	KRTAP13-4	21	31802579	5'Flank	SNP	C	TCGA-44-2657-01A-01D-1105-08	868428	31802579	16327316	890	105489											
GCFC1	94104	broad.mit.edu	37	chr21	34143677	34143677	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcaggctggcccggggCacctctttgttctcgcgagg	15	13	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34143677	A	A	34143677	2	1	107	1	0	0	0	0	0	0	0	1	6351	697	25	3		3	GCFC1	21	34143677	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	2341098	34143677	13986218	891	105490											
CRYZL1	9946	broad.mit.edu	37	chr21	34968212	34968212	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatgactggtatctcgagTcagaaaaacttctacacaaa	8	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34968212	C	C	34968212	1	2	107	0	1	0	0	0	0	0	0	0	3955	1682	58	5		5	CRYZL1	21	34968212	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	824535	34968212	13161683	892	105491											
SETD4	54093	broad.mit.edu	37	chr21	37429497	37429497	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaattcagacttgtggctctCattcactatcaggcaaggag	9	9	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37429497	A	A	37429497	4	1	107	1	0	0	0	0	0	1	0	0	14246	835	29	3	1302	3	SETD4	21	37429497	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2461285	37429497	10700398	893	105492											
IGSF5	150084	broad.mit.edu	37	chr21	41165524	41165524	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaaagaaacagtagctGtggccctcctcaccaggtag	10	11	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41165524	A	A	41165524	3	1	107	1	0	0	0	0	1	0	0	0	7672	1377	48	4	1142	4	IGSF5	21	41165524	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3736027	41165524	6964371	894	105493											
UMODL1	89766	broad.mit.edu	37	chr21	43505661	43505661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaatgactgactctgaaCgaaattctagttcttaaaaa	5	9	3	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43505661	A	A	43505661	1	1	107	0	1	0	0	0	0	0	0	0	17106	551	19	3		3	UMODL1	21	43505661	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2340137	43505661	4624234	895	105494											
ABCG1	9619	broad.mit.edu	37	chr21	43702588	43702588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaccccctgtattcagcGgttcttccaggtgaccctga	9	13	2	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43702588	T	T	43702588	1	4	107	0	1	0	0	0	0	0	0	0	68	1131	39	1		1	ABCG1	21	43702588	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	196927	43702588	4427307	896	105495											
PFKL	5211	broad.mit.edu	37	chr21	45730918	45730918	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcctcgtggagggaggtgaGaacatcaagcaggccaactg	16	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45730918	A	A	45730918	2	1	107	1	0	0	0	0	0	0	0	1	11859	933	33	4		4	PFKL	21	45730918	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	2028330	45730918	2398977	897	105496											
TRPM2	7226	broad.mit.edu	37	chr21	45786602	45786602	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtccctgaccactgacaCacaggttccctccgccgttt	8	17	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45786602	T	T	45786602	1	4	107	0	1	0	0	0	0	0	0	0	16711	493	17	4		4	TRPM2	21	45786602	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	55684	45786602	2343293	898	105497											
TRPM2	7226	broad.mit.edu	37	chr21	45825813	45825813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccggcgacgctgtaccccGggcgcgtcatcctctctctg	11	18	3	0	rs147919263		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45825813	T	T	45825813	3	4	107	1	0	0	0	0	1	0	0	0	16711	1116	39	1	2753	1	TRPM2	21	45825813	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	39211	45825813	2304082	899	105498											
POFUT2	23275	broad.mit.edu	37	chr21	46686069	46686069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggggtttctccagacCtcaggtcagcggcctgcccg	12	16	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46686069	A	A	46686069	1	1	107	0	1	0	0	0	0	0	0	0	12279	696	24	2		2	POFUT2	21	46686069	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	860256	46686069	1443826	900	105499											
DIP2A	23181	broad.mit.edu	37	chr21	47976893	47976893	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccttatgccgctccataaaGctgcagtgtgagctgtaccc	10	13	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47976893	C	C	47976893	3	2	107	1	0	0	0	0	1	0	0	0	4567	962	34	4	3771	4	DIP2A	21	47976893	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1290824	47976893	153002	901	105500											
GAB4	128954	broad.mit.edu	37	chr22	17445614	17445614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgagtgtgggtcccagGggactctgataggagcctta	15	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17445614	T	T	17445614	1	4	107	0	1	0	0	0	0	0	0	0	6211	1247	43	2		2	GAB4	22	17445614	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08		17445614	33858952	902	105501											
MICAL3	57553	broad.mit.edu	37	chr22	18300618	18300618	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcgcctggctcttcacGgacttctccctggctcgcat	10	17	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18300618	A	A	18300618	2	1	107	1	0	0	0	0	0	0	0	1	9664	1103	39	4		4	MICAL3	22	18300618	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	855004	18300618	33003948	903	105502											
MICAL3	57553	broad.mit.edu	37	chr22	18301586	18301586	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccggggcaggctggaagcGtatgggggactgggtagggg	24	6	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18301586	A	A	18301586	3	1	107	1	0	0	0	0	1	0	0	0	9664	1145	40	4	2195	4	MICAL3	22	18301586	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	968	18301586	33002980	904	105503											
HIRA	7290	broad.mit.edu	37	chr22	19365548	19365549	+	Missense_Mutation	DNP	CC	AA	AA													gcatggtgcccgccagggagCccgagagggggatgctgtta							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	19365549	AA	AA	19365548	3	1	107	1	0	0	0	0	1	0	0	0	7187	739	26	3	1644	3	HIRA	22	19365548	Missense_Mutation	DNP	CC	TCGA-44-2657-01A-01D-1105-08	1063962	19365548	31939018	905	105504											
SUSD2	56241	broad.mit.edu	37	chr22	24584179	24584179	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagccccctcactgacactCgctccctcaccaggacgcag	8	19	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24584179	T	T	24584179	1	4	107	0	1	0	0	0	0	0	0	0	15526	899	31	4		4	SUSD2	22	24584179	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	5218631	24584179	26720387	906	105505											
CYTSA	23384	broad.mit.edu	37	chr22	24808752	24808752	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtcctgtttaagctgaaTcctcgtgggcatggggtagt	13	8	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24808752	A	A	24808752	1	1	107	0	1	0	0	0	0	0	0	0	4242	1450	50	5		5	CYTSA	22	24808752	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	224573	24808752	26495814	907	105506											
PIWIL3	440822	broad.mit.edu	37	chr22	25121445	25121445	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccagctctttcacaagctCttctcctgttttctggatga	6	13	5	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25121445	G	G	25121445	3	3	107	1	0	0	0	0	1	0	0	0	12054	922	32	4	594	4	PIWIL3	22	25121445	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	312693	25121445	26183121	908	105507											
CRYBB2	1415	broad.mit.edu	37	chr22	25617281	25617281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaaaaagagaatgtttGgggccagaggggagtggtct	18	3	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25617281	T	T	25617281	1	4	107	0	1	0	0	0	0	0	0	0	3943	1363	47	2		2	CRYBB2	22	25617281	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	495836	25617281	25687285	909	105508											
MYO18B	84700	broad.mit.edu	37	chr22	26164338	26164338	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggggcgtgaggaggggtgAtgtgttgttgatggtggcca	22	3	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26164338	T	T	26164338	3	4	107	1	0	0	0	0	1	0	0	0	10160	333	12	5	465	5	MYO18B	22	26164338	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	547057	26164338	25140228	910	105509											
SEZ6L	23544	broad.mit.edu	37	chr22	26706764	26706764	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcgagttcacgtccgaccAggcccgggcggcctccacct	11	18	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26706764	T	T	26706764	3	4	107	1	0	0	0	0	1	0	0	0	14256	188	7	5	1669	5	SEZ6L	22	26706764	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	542426	26706764	24597802	911	105510											
SEZ6L	23544	broad.mit.edu	37	chr22	26709983	26709984	+	Intron	DNP	GG	TT	TT													taagcatctactatgtgccgGgactatgcagagaacaggca							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26709984	TT	TT	26709983	1	4	107	0	1	0	0	0	0	0	0	0	14256	1247	43	2		2	SEZ6L	22	26709983	Intron	DNP	GG	TCGA-44-2657-01A-01D-1105-08	3219	26709983	24594583	912	105511											
TBC1D10A	83874	broad.mit.edu	37	chr22	30691010	30691010	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcgggccggtacagcgTgtaggccttcagcacacgga	13	14	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30691010	A	A	30691010	3	1	107	1	0	0	0	0	1	0	0	0	15717	1696	59	5	987	5	TBC1D10A	22	30691010	Missense_Mutation	SNP	T	TCGA-44-2657-01A-01D-1105-08	3981027	30691010	20613556	913	105512											
SF3A1	10291	broad.mit.edu	37	chr22	30735257	30735257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacctgtacagtcacaaaaCagaggcagaggatagaaaga	11	7	1	5			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30735257	A	A	30735257	1	1	107	0	1	0	0	0	0	0	0	0	14259	493	17	3		3	SF3A1	22	30735257	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	44247	30735257	20569309	914	105513											
APOL2	23780	broad.mit.edu	37	chr22	36624459	36624462	+	Intron	DEL	AATT	-	-													gaaacaaattttacaaatggAattaattatctttcaaactc					rs5995263	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36624462	-	-	36624459	6	5	107	0	1	1	0	1	0	0	0	0	808	261	9	0		0	APOL2	22	36624459	Intron	DEL	AATT	TCGA-44-2657-01A-01D-1105-08	5889202	36624459	14680107	915	105514											
TRIOBP	11078	broad.mit.edu	37	chr22	38121216	38121216	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaccatcatctccccacCgctccactcaatggaacaat	5	16	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38121216	T	T	38121216	3	4	107	1	0	0	0	0	1	0	0	0	16678	652	23	4	2671	4	TRIOBP	22	38121216	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1496757	38121216	13183350	916	105515											
APOBEC3G	60489	broad.mit.edu	37	chr22	39477646	39477646	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcacctcctgctcatcctCttgaggcctcccctctgttc	5	19	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39477646	G	G	39477646	1	3	107	0	1	0	0	0	0	0	0	0	796	928	32	4		4	APOBEC3G	22	39477646	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1356430	39477646	11826920	917	105516											
CACNA1I	8911	broad.mit.edu	37	chr22	40055839	40055839	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggtggccatcctggtGgagggcttccaggcggaggt	18	10	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40055839	T	T	40055839	2	4	107	1	0	0	0	0	0	0	0	1	2572	1335	47	2		2	CACNA1I	22	40055839	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	578193	40055839	11248727	918	105517											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45221291	45221291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcaggtggggcatccaGccccacccagcgcctccgtg	12	18	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45221291	T	T	45221291	1	4	107	0	1	0	0	0	0	0	0	0	12707	986	34	3		3	PRR5-ARHGAP8	22	45221291	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5165452	45221291	6083275	919	105518											
ZBED4	9889	broad.mit.edu	37	chr22	50277987	50277987	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgatcgaataacagaggagtCtgtgtctgtagtttcttctg	11	7	4	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50277987	G	G	50277987	3	3	107	1	0	0	0	0	1	0	0	0	17646	913	32	4	679	4	ZBED4	22	50277987	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	5056696	50277987	1026579	920	105519											
SAPS2	9701	broad.mit.edu	37	chr22	50875923	50875923	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccgtccctccctccctcCctccctcccaggccttctct	4	24	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50875923	T	T	50875923	1	4	107	0	1	0	0	0	0	0	0	0	13949	638	22	4		4	SAPS2	22	50875923	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	597936	50875923	428643	921	105520											
ASMT	438	broad.mit.edu	37	chrX	1755382	1755382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatctgtacatcctggccaGggtcctccatgactgggcag	12	12	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1755382	T	T	1755382	3	4	107	1	0	0	0	0	1	0	0	0	1049	1000	35	2	869	2	ASMT	23	1755382	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08		1755382	153515178	922	105521											
ARSH	347527	broad.mit.edu	37	chrX	2936546	2936546	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgacttcatatttgtgaaGgtaattttggtaactttcta	7	4	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2936546	A	A	2936546	1	1	107	0	1	0	0	0	0	0	0	0	997	1015	35	4		4	ARSH	23	2936546	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1181164	2936546	152334014	923	105522											
ARSF	416	broad.mit.edu	37	chrX	2999163	2999163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattttacaatgtcttatGtaaaggcgcagtggcccatg	10	7	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2999163	T	T	2999163	1	4	107	0	1	0	0	0	0	0	0	0	995	1392	48	3		3	ARSF	23	2999163	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	62617	2999163	152271397	924	105523											
MXRA5	25878	broad.mit.edu	37	chrX	3261949	3261949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttattcacaggtagcaccgAcgaactgtgggcaattttta	9	9	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3261949	T	T	3261949	1	4	107	0	1	0	0	0	0	0	0	0	10097	290	10	5		5	MXRA5	23	3261949	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	262786	3261949	152008611	925	105524											
NLGN4X	57502	broad.mit.edu	37	chrX	5821792	5821792	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaccatgtccgtggtgtcCagcatgttgcagccgacctt	10	13	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5821792	T	T	5821792	2	4	107	1	0	0	0	0	0	0	0	1	10559	581	21	4		4	NLGN4X	23	5821792	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	2559843	5821792	149448768	926	105525											
BMX	660	broad.mit.edu	37	chrX	15527334	15527334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggggtaataggaagtgacTctccattgcccaccccccac	9	15	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15527334	C	C	15527334	1	2	107	0	1	0	0	0	0	0	0	0	1479	1566	54	5		5	BMX	23	15527334	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	9705542	15527334	139743226	927	105526											
BMX	660	broad.mit.edu	37	chrX	15574391	15574391	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaatagtgttctctgtatTgtctattatttagaaatgaa	6	3	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15574391	C	C	15574391	1	2	107	0	1	0	0	0	0	0	0	0	1479	1827	63	5		5	BMX	23	15574391	3'UTR	SNP	T	TCGA-44-2657-01A-01D-1105-08	47057	15574391	139696169	928	105527											
GPR64	10149	broad.mit.edu	37	chrX	19046303	19046303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatctttaaaacttacctGgggaacagtgctttctttat	6	7	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19046303	T	T	19046303	3	4	107	1	0	0	0	0	1	0	0	0	6770	1357	47	2	2721	2	GPR64	23	19046303	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	3471912	19046303	136224257	929	105528											
MAP3K15	389840	broad.mit.edu	37	chrX	19398322	19398322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatggtgcagcccagggaCcagatatcggctggggcacc	15	11	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19398322	A	A	19398322	3	1	107	1	0	0	0	0	1	0	0	0	9341	508	18	3	1480	3	MAP3K15	23	19398322	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	352019	19398322	135872238	930	105529											
FAM48B1	100130302	broad.mit.edu	37	chrX	24381752	24381752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggaagttgtgtagacaCgtggaaaggcagaccctgtg	15	7	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24381752	A	A	24381752	3	1	107	1	0	0	0	0	1	0	0	0	5624	536	19	3	877	3	FAM48B1	23	24381752	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	4983430	24381752	130888808	931	105530											
MAGEB18	286514	broad.mit.edu	37	chrX	26157899	26157899	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccaacagtgatcctccacGctatgaattcctgtggggtc	10	13	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26157899	C	C	26157899	3	2	107	1	0	0	0	0	1	0	0	0	9267	1087	38	4	799	4	MAGEB18	23	26157899	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1776147	26157899	129112661	932	105531											
CXorf59	286464	broad.mit.edu	37	chrX	36156456	36156456	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaggtttgattttttttTttttacagattgagtctcat	6	4	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36156456	C	C	36156456	1	2	107	0	1	0	0	0	0	0	0	0	4148	1856	64	5		5	CXorf59	23	36156456	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	9998557	36156456	119114104	933	105532											
ARAF	369	broad.mit.edu	37	chrX	47426121	47426121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagcgcatccgctccacgtCcactcccaacgtccatatgg	7	18	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47426121	T	T	47426121	3	4	107	1	0	0	0	0	1	0	0	0	839	855	30	4	663	4	ARAF	23	47426121	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	11269665	47426121	107844439	934	105533											
WDR13	64743	broad.mit.edu	37	chrX	48457296	48457296	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaggcagtgctcgtgcctAtagcaacagcatcgtccgca	11	14	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48457296	T	T	48457296	3	4	107	1	0	0	0	0	1	0	0	0	17402	449	16	5	239	5	WDR13	23	48457296	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	1031175	48457296	106813264	935	105534											
CACNA1F	778	broad.mit.edu	37	chrX	49063289	49063289	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggactgagcacgggggagtCcctgcctgctcatctaggta	14	11	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49063289	G	G	49063289	2	3	107	1	0	0	0	0	0	0	0	1	2569	842	30	4		4	CACNA1F	23	49063289	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	605993	49063289	106207271	936	105535											
DGKK	139189	broad.mit.edu	37	chrX	50133509	50133509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaaatgtttatgtggtgGggggaggtgggttgtagggg	21	0	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50133509	T	T	50133509	1	4	107	0	1	0	0	0	0	0	0	0	4512	1247	43	2		2	DGKK	23	50133509	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	1070220	50133509	105137051	937	105536											
STARD8	9754	broad.mit.edu	37	chrX	67937356	67937356	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggtccccaggacaaagcCaagaagcgccatcgtaaccg	12	13	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67937356	A	A	67937356	2	1	107	1	0	0	0	0	0	0	0	1	15381	581	21	2		2	STARD8	23	67937356	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	17803847	67937356	87333204	938	105537											
STARD8	9754	broad.mit.edu	37	chrX	67941413	67941413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggttggcagcagcacaaGccgccaccttgctgctcccc	11	16	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67941413	T	T	67941413	3	4	107	1	0	0	0	0	1	0	0	0	15381	971	34	3	2322	3	STARD8	23	67941413	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	4057	67941413	87329147	939	105538											
ARR3	407	broad.mit.edu	37	chrX	69489779	69489779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtccaaaaaagggaagcCtggggaaagaggaatggaaa	15	4	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69489779	A	A	69489779	1	1	107	0	1	0	0	0	0	0	0	0	983	696	24	2		2	ARR3	23	69489779	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1548366	69489779	85780781	940	105539											
KIF4A	24137	broad.mit.edu	37	chrX	69595302	69595302	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtgagaaaatagcaggCagagcaatcatttcaagtgt	11	6	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69595302	T	T	69595302	1	4	107	0	1	0	0	0	0	0	0	0	8373	725	25	4		4	KIF4A	23	69595302	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	105523	69595302	85675258	941	105540											
DLG3	1741	broad.mit.edu	37	chrX	69669111	69669111	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggccccttctgaggcctgGagaactagctctgggatata	12	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69669111	T	T	69669111	1	4	107	0	1	0	0	0	0	0	0	0	4596	1189	41	3		3	DLG3	23	69669111	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	73809	69669111	85601449	942	105541											
TEX11	56159	broad.mit.edu	37	chrX	69849576	69849576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctctaaagtaattattGcctgcaaagctgaaaaacaa	5	7	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69849576	T	T	69849576	3	4	107	1	0	0	0	0	1	0	0	0	15896	1319	46	3	1336	3	TEX11	23	69849576	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	180465	69849576	85420984	943	105542											
MED12	9968	broad.mit.edu	37	chrX	70356683	70356683	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccccagctccccgacccCattcagctacaacccactca	3	23	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70356683	T	T	70356683	1	4	107	0	1	0	0	0	0	0	0	0	9521	609	21	4		4	MED12	23	70356683	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	507107	70356683	84913877	944	105543											
RGAG4	340526	broad.mit.edu	37	chrX	71350872	71350872	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaacctcatggtcggctatGaaggtctctagctgcatcag	11	10	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71350872	A	A	71350872	2	1	107	1	0	0	0	0	0	0	0	1	13383	1281	45	4		4	RGAG4	23	71350872	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	994189	71350872	83919688	945	105544											
RLIM	51132	broad.mit.edu	37	chrX	73812218	73812218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggaggtctctgtcctgatCctgtagattcaccactggca	10	11	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73812218	A	A	73812218	3	1	107	1	0	0	0	0	1	0	0	0	13501	855	30	3	946	3	RLIM	23	73812218	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	2461346	73812218	81458342	946	105545											
ABCB7	22	broad.mit.edu	37	chrX	74273349	74273349	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacggctgctctgtgtatgCcacatttctgaatagatact	8	10	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74273349	G	G	74273349	3	3	107	1	0	0	0	0	1	0	0	0	46	740	26	4	147	4	ABCB7	23	74273349	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	461131	74273349	80997211	947	105546											
MAGT1	84061	broad.mit.edu	37	chrX	77096936	77096936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccttcaactcttcattatAaaaaaccaaaataaggaatc	2	9	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77096936	G	G	77096936	1	3	107	0	1	0	0	0	0	0	0	0	9288	377	13	5		5	MAGT1	23	77096936	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2823587	77096936	78173624	948	105547											
ATP7A	538	broad.mit.edu	37	chrX	77276691	77276691	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctttaaaggtttggagtGggagagtgataagaataata	13	1	1	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77276691	A	A	77276691	1	1	107	0	1	0	0	0	0	0	0	0	1194	1363	47	4		4	ATP7A	23	77276691	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	179755	77276691	77993869	949	105548											
PGK1	5230	broad.mit.edu	37	chrX	77373478	77373478	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaaatattttagtgataagGagctggcctctaggactagg	12	5	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77373478	C	C	77373478	1	2	107	0	1	0	0	0	0	0	0	0	11885	1189	41	4		4	PGK1	23	77373478	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	96787	77373478	77897082	950	105549											
SATL1	340562	broad.mit.edu	37	chrX	84349254	84349254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaggaagggagaagaaaGggtgtagaaaggttggttga	18	2	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84349254	T	T	84349254	1	4	107	0	1	0	0	0	0	0	0	0	13967	1015	35	2		2	SATL1	23	84349254	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	6975776	84349254	70921306	951	105550											
KLHL4	56062	broad.mit.edu	37	chrX	86869090	86869090	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggttttgagtagggcaaTtataaataagagataatgag	11	1	0	3			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86869090	A	A	86869090	1	1	107	0	1	0	0	0	0	0	0	0	8462	1508	52	5		5	KLHL4	23	86869090	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	2519836	86869090	68401470	952	105551											
PABPC5	140886	broad.mit.edu	37	chrX	90690839	90690839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatttgattaatggaaaacCattccgccttatgtggtctc	8	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90690839	T	T	90690839	3	4	107	1	0	0	0	0	1	0	0	0	11461	594	21	4	265	4	PABPC5	23	90690839	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3821749	90690839	64579721	953	105552											
PABPC5	140886	broad.mit.edu	37	chrX	90690948	90690948	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaatagggccctgttttaCttattttctgcttttgggaa	9	7	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90690948	A	A	90690948	4	1	107	1	0	0	0	0	0	1	0	0	11461	576	20	3	374	3	PABPC5	23	90690948	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	109	90690948	64579612	954	105553											
PCDH11X	27328	broad.mit.edu	37	chrX	91642839	91642839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttaccagcacatctcatGgcctgccccttggctatcct	7	17	1	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91642839	T	T	91642839	3	4	107	1	0	0	0	0	1	0	0	0	11602	1348	47	2	3390	2	PCDH11X	23	91642839	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	951891	91642839	63627721	955	105554											
SYTL4	94121	broad.mit.edu	37	chrX	99943410	99943410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatgtaacttcactaggtGgtcaatgtcttcttcttctt	8	9	6	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99943410	T	T	99943410	3	4	107	1	0	0	0	0	1	0	0	0	15604	1348	47	2	1104	2	SYTL4	23	99943410	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	8300571	99943410	55327150	956	105555											
GPRASP1	9737	broad.mit.edu	37	chrX	101910160	101910161	+	Missense_Mutation	DNP	GG	TT	TT													cataattgggagttggttctGgactgaagaagaggccagta							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	101910161	TT	TT	101910160	3	4	107	1	0	0	0	0	1	0	0	0	6788	1357	47	2	1321	2	GPRASP1	23	101910160	Missense_Mutation	DNP	GG	TCGA-44-2657-01A-01D-1105-08	1966750	101910160	53360400	957	105556											
NXF3	56000	broad.mit.edu	37	chrX	102337496	102337496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcagcttgttaatgttgGgggcctttggcataatgtca	11	6	2	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102337496	T	T	102337496	1	4	107	0	1	0	0	0	0	0	0	0	10880	1247	43	2		2	NXF3	23	102337496	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	427336	102337496	52933064	958	105557											
H2BFWT	158983	broad.mit.edu	37	chrX	103268141	103268141	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtcgtctcagaggaaggtCcagccatggcggaggcagtg	17	9	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103268141	G	G	103268141	3	3	107	1	0	0	0	0	1	0	0	0	6998	855	30	4	443	4	H2BFWT	23	103268141	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	930645	103268141	52002419	959	105558											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104464476	104464477	+	Intron	DNP	TG	AA	AA													ggcagggctgaggtgtgttcTgggggcaaggcgggagcact							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	104464477	AA	AA	104464476	1	1	107	0	1	0	0	0	0	0	0	0	7732	1595	55	5		5	IL1RAPL2	23	104464476	Intron	DNP	TG	TCGA-44-2657-01A-01D-1105-08	1196335	104464476	50806084	960	105559											
NRK	203447	broad.mit.edu	37	chrX	105150543	105150543	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttgttgagtcattaacaAggcatcttactggaatcatt	8	6	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105150543	G	G	105150543	3	3	107	1	0	0	0	0	1	0	0	0	10750	63	3	5	1024	5	NRK	23	105150543	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	686067	105150543	50120017	961	105560											
CXorf57	55086	broad.mit.edu	37	chrX	105882611	105882611	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctatttcacaaaattatatAgaaggatgccagatataaac	5	7	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105882611	G	G	105882611	1	3	107	0	1	0	0	0	0	0	0	0	4146	435	15	5		5	CXorf57	23	105882611	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	732068	105882611	49387949	962	105561											
RNF128	79589	broad.mit.edu	37	chrX	106038880	106038880	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttattcctcatgttgacaaCccaacctttgaagaagacga	7	10	1	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106038880	G	G	106038880	3	3	107	1	0	0	0	0	1	0	0	0	13547	506	18	4	1660	4	RNF128	23	106038880	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	156269	106038880	49231680	963	105562											
PRPS1	5631	broad.mit.edu	37	chrX	106882646	106882646	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcctgcaagattgcttcaGccagccgggttactgcagtc	11	12	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106882646	A	A	106882646	3	1	107	1	0	0	0	0	1	0	0	0	12684	971	34	4	250	4	PRPS1	23	106882646	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	843766	106882646	48387914	964	105563											
COL4A6	1288	broad.mit.edu	37	chrX	107414541	107414541	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttgcagaacttggggttGacctccaaaattccttctaa	8	9	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107414541	T	T	107414541	1	4	107	0	1	0	0	0	0	0	0	0	3727	1305	45	3		3	COL4A6	23	107414541	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	531895	107414541	47856019	965	105564											
COL4A6	1288	broad.mit.edu	37	chrX	107422549	107422549	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttcagcaccaaagatgtCaccagtggctcccttggaac	8	12	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107422549	A	A	107422549	3	1	107	1	0	0	0	0	1	0	0	0	3727	826	29	3	2901	3	COL4A6	23	107422549	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	8008	107422549	47848011	966	105565											
COL4A5	1287	broad.mit.edu	37	chrX	107842032	107842032	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtccccctggtttcggccCtccaggcccagtaggtgaaa	13	14	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107842032	T	T	107842032	3	4	107	1	0	0	0	0	1	0	0	0	3726	681	24	4	1978	4	COL4A5	23	107842032	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	419483	107842032	47428528	967	105566											
KCNE1L	23630	broad.mit.edu	37	chrX	108867958	108867958	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcccattcgtgctcggcgcAagcctgggacggctcgtcct	14	15	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108867958	T	T	108867958	3	4	107	1	0	0	0	0	1	0	0	0	8092	130	5	5	140	5	KCNE1L	23	108867958	Missense_Mutation	SNP	A	TCGA-44-2657-01A-01D-1105-08	1025926	108867958	46402602	968	105567											
PAK3	5063	broad.mit.edu	37	chrX	110406672	110406672	+	Intron	DEL	T	-	-													ctttcagctactcaaagtccTttttttttttaagaaaatac							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110406672	-	-	110406672	6	5	107	0	1	1	0	1	0	0	0	0	11496	1624	56	0		0	PAK3	23	110406672	Intron	DEL	T	TCGA-44-2657-01A-01D-1105-08	1538714	110406672	44863888	969	105568											
HTR2C	3358	broad.mit.edu	37	chrX	114141546	114141546	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttcgaaagtccttgggatTgttttctttgtgtttctgat	10	6	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114141546	A	A	114141546	2	1	107	1	0	0	0	0	0	0	0	1	7513	1800	63	5		5	HTR2C	23	114141546	Silent	SNP	T	TCGA-44-2657-01A-01D-1105-08	3734874	114141546	41129014	970	105569											
DOCK11	139818	broad.mit.edu	37	chrX	117789045	117789045	+	Intron	SNP	C	A	A													aaaatatgttcacccttggcCttattcagtgttaaaaataa							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117789045	A	A	117789045	1	1	107	0	1	0	0	0	0	0	0	0	4726	696	24	2		2	DOCK11	23	117789045	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3647499	117789045	37481515	971	105570	457	2									
DOCK11	139818	broad.mit.edu	37	chrX	117789047	117789047	+	Intron	SNP	T	A	A													aatatgttcacccttggcctTattcagtgttaaaaataagc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117789047	A	A	117789047	1	1	107	0	1	0	0	0	0	0	0	0	4726	1769	61	5		5	DOCK11	23	117789047	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	2	117789047	37481513	972	105571	457	2									
CXorf56	63932	broad.mit.edu	37	chrX	118673720	118673720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttgtcaatcaaggtcccCttcattttcgctttcttggc	8	11	4	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118673720	A	A	118673720	3	1	107	1	0	0	0	0	1	0	0	0	4145	680	24	2	33	2	CXorf56	23	118673720	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	884673	118673720	36596840	973	105572											
SEPT6	23157	broad.mit.edu	37	chrX	118771019	118771019	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgtcagggtcggtgtcCttgaagcccatctcctccag	11	13	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118771019	T	T	118771019	2	4	107	1	0	0	0	0	0	0	0	1	14181	680	24	4		4	SEPT6	23	118771019	Silent	SNP	C	TCGA-44-2657-01A-01D-1105-08	97299	118771019	36499541	974	105573											
SEPT6	23157	broad.mit.edu	37	chrX	118783987	118783987	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgctgacaagctcgctggtGattttgattttgaactttgt	10	6	0	4			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118783987	A	A	118783987	2	1	107	1	0	0	0	0	0	0	0	1	14181	1280	45	4		4	SEPT6	23	118783987	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	12968	118783987	36486573	975	105574											
RHOXF1	158800	broad.mit.edu	37	chrX	119243227	119243227	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaattctctctgatgtcGcctacatctggcccttttat	5	12	3	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119243227	T	T	119243227	2	4	107	1	0	0	0	0	0	0	0	1	13456	1095	38	3		3	RHOXF1	23	119243227	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	459240	119243227	36027333	976	105575											
SASH3	54440	broad.mit.edu	37	chrX	128921884	128921884	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggtattgtgtggtgggggGaggcgagtatgtgggccctc	21	5	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128921884	T	T	128921884	1	4	107	0	1	0	0	0	0	0	0	0	13961	1189	41	3		3	SASH3	23	128921884	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	9678657	128921884	26348676	977	105576											
SASH3	54440	broad.mit.edu	37	chrX	128924679	128924679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgaggctgacaaaagcaCatccacatggtgccctggtt	10	11	0	2	rs147361684	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128924679	A	A	128924679	1	1	107	0	1	0	0	0	0	0	0	0	13961	493	17	3		3	SASH3	23	128924679	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	2795	128924679	26345881	978	105577											
ARHGAP36	158763	broad.mit.edu	37	chrX	130220349	130220349	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctaagcgcgtgtggaagtCcagcccggaagcacttgatt	13	10	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130220349	T	T	130220349	3	4	107	1	0	0	0	0	1	0	0	0	885	855	30	4	1362	4	ARHGAP36	23	130220349	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1295670	130220349	25050211	979	105578											
IGSF1	3547	broad.mit.edu	37	chrX	130407900	130407900	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtctcttccgtctgtctctGagcctctatgtaaagaaaaa	8	10	4	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130407900	T	T	130407900	4	4	107	1	0	0	0	0	0	1	0	0	7666	1294	45	3	133	3	IGSF1	23	130407900	Nonsense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	187551	130407900	24862660	980	105579											
GPC4	2239	broad.mit.edu	37	chrX	132440207	132440207	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgaggtttggggaagaacAatacagcataaaaagtcaat	10	4	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132440207	G	G	132440207	1	3	107	0	1	0	0	0	0	0	0	0	6665	145	5	5		5	GPC4	23	132440207	Intron	SNP	A	TCGA-44-2657-01A-01D-1105-08	2032307	132440207	22830353	981	105580											
PLAC1	10761	broad.mit.edu	37	chrX	133700520	133700520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggcgtgtggctgaacatGgtttggggggcaacccaggc	18	8	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133700520	T	T	133700520	3	4	107	1	0	0	0	0	1	0	0	0	12107	1348	47	2	449	2	PLAC1	23	133700520	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	1260313	133700520	21570040	982	105581											
CT45A5	441521	broad.mit.edu	37	chrX	134947928	134947928	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgtccaaggcatcggatttCcttcactacttgacatttta	6	11	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134947928	A	A	134947928	4	1	107	1	0	0	0	0	0	1	0	0	4022	864	30	3	184	3	CT45A5	23	134947928	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	1247408	134947928	20322632	983	105582											
GPR112	139378	broad.mit.edu	37	chrX	135432071	135432071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactatgagcaccatactcaCccgaaccattcctacaccta	3	16	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135432071	A	A	135432071	3	1	107	1	0	0	0	0	1	0	0	0	6694	507	18	3	6216	3	GPR112	23	135432071	Missense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	484143	135432071	19838489	984	105583											
VGLL1	51442	broad.mit.edu	37	chrX	135618242	135618242	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacagaagcctataaagacGgaatggaattcccggtgtgt	11	7	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135618242	A	A	135618242	2	1	107	1	0	0	0	0	0	0	0	1	17285	1103	39	4		4	VGLL1	23	135618242	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	186171	135618242	19652318	985	105584											
CD40LG	959	broad.mit.edu	37	chrX	135730584	135730585	+	Intron	DNP	TT	AC	AC													gtaagatgaaccacaagcctTtattaactaaatttggggtc							TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	135730585	AC	AC	135730584	1	1	107	0	1	0	0	0	0	0	0	0	3046	1856	64	5		5	CD40LG	23	135730584	Intron	DNP	TT	TCGA-44-2657-01A-01D-1105-08	112342	135730584	19539976	986	105585											
MCF2	4168	broad.mit.edu	37	chrX	138667479	138667479	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtaagcagcaaattaacaGatctcatcctggccacatta	6	10	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138667479	T	T	138667479	1	4	107	0	1	0	0	0	0	0	0	0	9471	957	33	3		3	MCF2	23	138667479	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	2936895	138667479	16603081	987	105586											
ATP11C	286410	broad.mit.edu	37	chrX	138880817	138880817	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagcatattttttgataggTgtatcttaaaaattgttcac	6	4	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138880817	A	A	138880817	1	1	107	0	1	0	0	0	0	0	0	0	1125	1711	59	5		5	ATP11C	23	138880817	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	213338	138880817	16389743	988	105587											
CXorf66	347487	broad.mit.edu	37	chrX	139038299	139038299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaatatcattgaccaaaGgcctataagttttggcaaca	7	8	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139038299	T	T	139038299	3	4	107	1	0	0	0	0	1	0	0	0	4151	1000	35	2	247	2	CXorf66	23	139038299	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	157482	139038299	16232261	989	105588											
MAGEC3	139081	broad.mit.edu	37	chrX	140969660	140969660	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttgagtgcagggacattaCctggagtagcgacatgtgcc	14	8	0	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140969660	G	G	140969660	1	3	107	0	1	0	0	0	0	0	0	0	9274	522	18	4		4	MAGEC3	23	140969660	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	1931361	140969660	14300900	990	105589											
SLITRK2	84631	broad.mit.edu	37	chrX	144904139	144904139	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccccagtatcgaatctatCagctttttctcaatggaaac	5	13	3	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144904139	T	T	144904139	4	4	107	1	0	0	0	0	0	1	0	0	14857	827	29	4	198	4	SLITRK2	23	144904139	Nonsense_Mutation	SNP	C	TCGA-44-2657-01A-01D-1105-08	3934479	144904139	10366421	991	105590											
AFF2	2334	broad.mit.edu	37	chrX	148037249	148037249	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccatggagactatttctctGcctcctccaatcatccaacc	4	17	2	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148037249	C	C	148037249	2	2	107	1	0	0	0	0	0	0	0	1	357	1306	46	4		4	AFF2	23	148037249	Silent	SNP	G	TCGA-44-2657-01A-01D-1105-08	3133110	148037249	7233311	992	105591											
PLXNB3	5365	broad.mit.edu	37	chrX	153043158	153043158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacaggtgcctttcctgctGccccacccctgctgtgcata	8	17	0	0			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153043158	A	A	153043158	1	1	107	0	1	0	0	0	0	0	0	0	12220	1334	46	4		4	PLXNB3	23	153043158	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	5005909	153043158	2227402	993	105592											
SRPK3	26576	broad.mit.edu	37	chrX	153046925	153046925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcccaggggagtgagaaCcccctccaccccaatctaca	11	16	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153046925	A	A	153046925	1	1	107	0	1	0	0	0	0	0	0	0	15279	522	18	3		3	SRPK3	23	153046925	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	3767	153046925	2223635	994	105593											
PDZD4	57595	broad.mit.edu	37	chrX	153068961	153068961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtggctcagggcaatgatGttgagctcgggcttgctgtc	16	9	1	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153068961	T	T	153068961	3	4	107	1	0	0	0	0	1	0	0	0	11797	1368	48	3	156	3	PDZD4	23	153068961	Missense_Mutation	SNP	G	TCGA-44-2657-01A-01D-1105-08	22036	153068961	2201599	995	105594											
L1CAM	3897	broad.mit.edu	37	chrX	153133043	153133043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgacaatggagtgatcagCatgtggctttgggggaaggg	17	6	1	1			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153133043	A	A	153133043	1	1	107	0	1	0	0	0	0	0	0	0	8660	725	25	3		3	L1CAM	23	153133043	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	64082	153133043	2137517	996	105595											
MPP1	4354	broad.mit.edu	37	chrX	154007672	154007672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcaagctgcaccaccccCagcccagagaggccagtgac	11	16	0	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154007672	A	A	154007672	1	1	107	0	1	0	0	0	0	0	0	0	9827	609	21	2		2	MPP1	23	154007672	Intron	SNP	C	TCGA-44-2657-01A-01D-1105-08	874629	154007672	1262888	997	105596											
F8	2157	broad.mit.edu	37	chrX	154185181	154185181	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattttcttcaggttataaGgggacatacactgagaatga	9	5	2	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154185181	A	A	154185181	1	1	107	0	1	0	0	0	0	0	0	0	5393	1015	35	4		4	F8	23	154185181	Intron	SNP	G	TCGA-44-2657-01A-01D-1105-08	177509	154185181	1085379	998	105597											
VAMP7	6845	broad.mit.edu	37	chrX	155127652	155127652	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctttaagataggatcaaTgctagttcctcctcagataa	6	8	3	2			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155127652	A	A	155127652	1	1	107	0	1	0	0	0	0	0	0	0	17244	1479	51	5		5	VAMP7	23	155127652	Intron	SNP	T	TCGA-44-2657-01A-01D-1105-08	942471	155127652	142908	999	105598											
MIB2	142678	broad.mit.edu	37	chr1	1562553	1562554	+	Missense_Mutation	DNP	GG	TT	TT													ggcgctgggtaacgcagcccGggctctggacctgctgcgga							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1562554	TT	TT	1562553	3	4	108	1	0	0	0	0	1	0	0	0	9660	1116	39	1	1727	1	MIB2	1	1562553	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08		1562553	247688068	1	105599											
PLEKHG5	57449	broad.mit.edu	37	chr1	6530442	6530442	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggatggcgtgaacgtaggGgaggccagagactgactccc	16	10	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6530442	T	T	6530442	1	4	108	0	1	0	0	0	0	0	0	0	12168	1247	43	2		2	PLEKHG5	1	6530442	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4967889	6530442	242720179	2	105600											
PLOD1	5351	broad.mit.edu	37	chr1	12012857	12012857	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggccaggctgcacgggaaCagctcctctcaggcctgaac	12	16	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12012857	T	T	12012857	1	4	108	0	1	0	0	0	0	0	0	0	12196	493	17	4		4	PLOD1	1	12012857	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5482415	12012857	237237764	3	105601											
VPS13D	55187	broad.mit.edu	37	chr1	12460230	12460230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttgctacctttccatGgccgtaggtggacaatcagc	10	11	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12460230	T	T	12460230	1	4	108	0	1	0	0	0	0	0	0	0	17319	1363	47	2		2	VPS13D	1	12460230	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	447373	12460230	236790391	4	105602											
PRDM2	7799	broad.mit.edu	37	chr1	14106677	14106677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgagagagaaactgtgaGccctccatgctttgatgaat	11	7	0	6			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14106677	T	T	14106677	3	4	108	1	0	0	0	0	1	0	0	0	12564	971	34	3	2413	3	PRDM2	1	14106677	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1646447	14106677	235143944	5	105603											
CDA	978	broad.mit.edu	37	chr1	20915820	20915820	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccagcccagcagcctgggTggtgggtcagaggaagatgt	16	11	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20915820	C	C	20915820	1	2	108	0	1	0	0	0	0	0	0	0	3082	1711	59	5		5	CDA	1	20915820	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	6809143	20915820	228334801	6	105604											
KIF17	57576	broad.mit.edu	37	chr1	21014281	21014281	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggaggaaacctgagtcttgGagacatcgtcactgggcaga	14	8	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21014281	A	A	21014281	3	1	108	1	0	0	0	0	1	0	0	0	8349	1174	41	4	1583	4	KIF17	1	21014281	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	98461	21014281	228236340	7	105605											
RAP1GAP	5909	broad.mit.edu	37	chr1	21925964	21925964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagctcctgtggggccCctgacccccctgagcctctc	9	19	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21925964	A	A	21925964	1	1	108	0	1	0	0	0	0	0	0	0	13145	638	22	2		2	RAP1GAP	1	21925964	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	911683	21925964	227324657	8	105606											
HSPG2	3339	broad.mit.edu	37	chr1	22181571	22181571	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaagggagaggcaggtgcaGggccaatattagggcccagt	16	7	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22181571	C	C	22181571	1	2	108	0	1	0	0	0	0	0	0	0	7500	1015	35	4		4	HSPG2	1	22181571	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	255607	22181571	227069050	9	105607											
EPHA8	2046	broad.mit.edu	37	chr1	22903323	22903323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagtggctcgtgcccatcgGcaaatgcgtgtgcagtgccg	15	12	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22903323	T	T	22903323	3	4	108	1	0	0	0	0	1	0	0	0	5215	1203	42	3	783	3	EPHA8	1	22903323	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	721752	22903323	226347298	10	105608											
STX12	23673	broad.mit.edu	37	chr1	28099797	28099797	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaggagagcggtgtagagcGagcaggtctcagctcctcgt	16	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28099797	T	T	28099797	1	4	108	0	1	0	0	0	0	0	0	0	15456	1073	37	3		3	STX12	1	28099797	5'UTR	SNP	G	TCGA-44-2659-01A-01D-0969-08	5196474	28099797	221150824	11	105609											
ATPIF1	93974	broad.mit.edu	37	chr1	28564412	28564412	+	Missense_Mutation	SNP	A	C	C													aagaagaaatcgttcatcatAagaaggagattgagcgtctg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28564412	C	C	28564412	3	2	108	1	0	0	0	0	1	0	0	0	1207	363	13	5	299	5	ATPIF1	1	28564412	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	464615	28564412	220686209	12	105610	458	2									
ATPIF1	93974	broad.mit.edu	37	chr1	28564414	28564414	+	Missense_Mutation	SNP	G	T	T													gaagaaatcgttcatcataaGaaggagattgagcgtctgca							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28564414	T	T	28564414	3	4	108	1	0	0	0	0	1	0	0	0	1207	933	33	3	301	3	ATPIF1	1	28564414	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2	28564414	220686207	13	105611	458	2									
CSMD2	114784	broad.mit.edu	37	chr1	34006354	34006354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctgggaaaccagccccCgtcaccatcattgatatcac	7	15	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34006354	A	A	34006354	1	1	108	0	1	0	0	0	0	0	0	0	3979	667	23	1		1	CSMD2	1	34006354	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5441940	34006354	215244267	14	105612											
CLSPN	63967	broad.mit.edu	37	chr1	36228163	36228163	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaagactacttttgtagtCcaacaccacatcatgctaca	5	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36228163	A	A	36228163	1	1	108	0	1	0	0	0	0	0	0	0	3592	870	30	3		3	CLSPN	1	36228163	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2221809	36228163	213022458	15	105613											
GRIK3	2899	broad.mit.edu	37	chr1	37346222	37346222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccccagcctagccaggCctggccacccacctgtactg	9	19	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37346222	A	A	37346222	1	1	108	0	1	0	0	0	0	0	0	0	6841	754	26	3		3	GRIK3	1	37346222	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1118059	37346222	211904399	16	105614											
SLC6A9	6536	broad.mit.edu	37	chr1	44466749	44466749	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggaacagcgggcagctgTgggaggcgcctgcagcccgg	20	11	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44466749	A	A	44466749	1	1	108	0	1	0	0	0	0	0	0	0	14805	1711	59	5		5	SLC6A9	1	44466749	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	7120527	44466749	204783872	17	105615											
IL23R	149233	broad.mit.edu	37	chr1	67648489	67648489	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaacttcgtatttcttacaGcacctcctaagtgttatgtt	6	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67648489	C	C	67648489	1	2	108	0	1	0	0	0	0	0	0	0	7746	986	34	4		4	IL23R	1	67648489	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	23181740	67648489	181602132	18	105616											
IL12RB2	3595	broad.mit.edu	37	chr1	67833708	67833708	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtctgctctgatttcaGgtacctaattgttcaccttc	7	10	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67833708	T	T	67833708	4	4	108	1	0	0	0	0	0	1	0	0	7697	1014	35	2	1493	2	IL12RB2	1	67833708	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	185219	67833708	181416913	19	105617											
LRRC7	57554	broad.mit.edu	37	chr1	70226056	70226056	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctttatctagatgccaatCaaattgaagaactacccaag	6	9	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70226056	A	A	70226056	3	1	108	1	0	0	0	0	1	0	0	0	9107	827	29	3	171	3	LRRC7	1	70226056	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2392348	70226056	179024565	20	105618											
ACADM	34	broad.mit.edu	37	chr1	76200678	76200678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaaacttagcaacatAttattacaatgatgtgtcaa	5	6	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76200678	G	G	76200678	1	3	108	0	1	0	0	0	0	0	0	0	113	464	16	5		5	ACADM	1	76200678	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	5974622	76200678	173049943	21	105619											
ACADM	34	broad.mit.edu	37	chr1	76209522	76209522	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaacactgatgtcaatatAatccctatataccacctctt	3	12	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76209522	T	T	76209522	1	4	108	0	1	0	0	0	0	0	0	0	113	377	13	5		5	ACADM	1	76209522	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	8844	76209522	173041099	22	105620											
ASB17	127247	broad.mit.edu	37	chr1	76384701	76384701	+	Frame_Shift_Del	DEL	G	-	-													gaagtgaaaatattccatctGggagcatattgttggttaat							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76384701	-	-	76384701	7	5	108	1	0	1	0	1	0	0	0	0	1025	1348	47	0	67	0	ASB17	1	76384701	Frame_Shift_Del	DEL	G	TCGA-44-2659-01A-01D-0969-08	175179	76384701	172865920	23	105621											
FUBP1	8880	broad.mit.edu	37	chr1	78422351	78422351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgagcgtaataagcagcCcaagctgctgaatttggatc	11	8	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78422351	A	A	78422351	3	1	108	1	0	0	0	0	1	0	0	0	6152	624	22	2	339	2	FUBP1	1	78422351	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2037650	78422351	170828270	24	105622											
ELTD1	64123	broad.mit.edu	37	chr1	79383281	79383281	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagcaccctatgatcatcaCttttttgaattgtaataaca	4	8	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79383281	G	G	79383281	1	3	108	0	1	0	0	0	0	0	0	0	5126	580	20	4		4	ELTD1	1	79383281	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	960930	79383281	169867340	25	105623											
GBP5	115362	broad.mit.edu	37	chr1	89732314	89732314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttagcatagactttgcaCtcattttcatttatttacct	3	8	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89732314	A	A	89732314	1	1	108	0	1	0	0	0	0	0	0	0	6339	580	20	3		3	GBP5	1	89732314	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	10349033	89732314	159518307	26	105624											
ZNF326	284695	broad.mit.edu	37	chr1	90470716	90470716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatcgtgactatggccatgGatcctatgggggtcagagat	15	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90470716	T	T	90470716	3	4	108	1	0	0	0	0	1	0	0	0	17972	1174	41	3	136	3	ZNF326	1	90470716	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	738402	90470716	158779905	27	105625											
GLMN	11146	broad.mit.edu	37	chr1	92729162	92729162	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatttactatgtgaacttTggtaatggtcacctcaccta	7	8	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92729162	C	C	92729162	1	2	108	0	1	0	0	0	0	0	0	0	6512	1827	63	5		5	GLMN	1	92729162	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	2258446	92729162	156521459	28	105626											
ABCA4	24	broad.mit.edu	37	chr1	94586508	94586508	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatttgctccacacctcaTttttaaaccacagacagtaa	3	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94586508	A	A	94586508	1	1	108	0	1	0	0	0	0	0	0	0	34	1508	52	5		5	ABCA4	1	94586508	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	1857346	94586508	154664113	29	105627											
DPYD	1806	broad.mit.edu	37	chr1	98012146	98012146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatcaaaaataacacatcCtgtgtatagcctttactttc	3	10	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98012146	A	A	98012146	1	1	108	0	1	0	0	0	0	0	0	0	4785	696	24	2		2	DPYD	1	98012146	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3425638	98012146	151238475	30	105628											
COL11A1	1301	broad.mit.edu	37	chr1	103404607	103404607	+	Frame_Shift_Del	DEL	C	-	-													tcacattttctcccttgtcaCccttgctgcctttttgtccc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103404607	-	-	103404607	7	5	108	1	0	1	0	1	0	0	0	0	3699	507	18	0	2094	0	COL11A1	1	103404607	Frame_Shift_Del	DEL	C	TCGA-44-2659-01A-01D-0969-08	5392461	103404607	145846014	31	105629											
COL11A1	1301	broad.mit.edu	37	chr1	103444752	103444752	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcatgcaagaacatcattCattcattcattcattcgtat	4	9	6	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103444752	G	G	103444752	1	3	108	0	1	0	0	0	0	0	0	0	3699	841	29	4		4	COL11A1	1	103444752	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	40145	103444752	145805869	32	105630											
KCNA2	3737	broad.mit.edu	37	chr1	111146880	111146880	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacagaagctgacaattgaGatcagaatcaccatgacaga	9	8	2	7			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111146880	T	T	111146880	2	4	108	1	0	0	0	0	0	0	0	1	8073	932	33	3		3	KCNA2	1	111146880	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	7702128	111146880	138103741	33	105631											
ADORA3	140	broad.mit.edu	37	chr1	112033147	112033147	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacctattttcatcgcctttTattttcccatcccactcctt	2	15	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112033147	A	A	112033147	1	1	108	0	1	0	0	0	0	0	0	0	329	1769	61	5		5	ADORA3	1	112033147	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	886267	112033147	137217474	34	105632											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	112999276	112999276	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcccaagagaaaccagtgGagaatggtgggtgtcctgtg	16	7	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112999276	T	T	112999276	4	4	108	1	0	0	0	0	0	1	0	0	4080	1175	41	3	1176	3	CTTNBP2NL	1	112999276	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	966129	112999276	136251345	35	105633											
NRAS	4893	broad.mit.edu	37	chr1	115258837	115258837	+	Intron	SNP	C	A	A													cagggttaattggcgagccaCatctacagtactttaaagct							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115258837	A	A	115258837	1	1	108	0	1	0	0	0	0	0	0	0	10735	493	17	3		3	NRAS	1	115258837	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2259561	115258837	133991784	36	105634	459	2									
NRAS	4893	broad.mit.edu	37	chr1	115258839	115258839	+	Intron	SNP	T	C	C													gggttaattggcgagccacaTctacagtactttaaagcttt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115258839	C	C	115258839	1	2	108	0	1	0	0	0	0	0	0	0	10735	1450	50	5		5	NRAS	1	115258839	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	2	115258839	133991782	37	105635	459	2									
PTGFRN	5738	broad.mit.edu	37	chr1	117517065	117517065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctatttatcccctaactGcctggcccagtactttgtac	5	13	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117517065	T	T	117517065	1	4	108	0	1	0	0	0	0	0	0	0	12856	1334	46	3		3	PTGFRN	1	117517065	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2258226	117517065	131733556	38	105636											
NBPF9	400818	broad.mit.edu	37	chr1	144824512	144824512	+	Intron	DEL	C	-	-													taccagaatagggaattttaCccacagtttctgggacaaaa							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144824512	-	-	144824512	6	5	108	0	1	1	0	1	0	0	0	0	10294	522	18	0		0	NBPF9	1	144824512	Intron	DEL	C	TCGA-44-2659-01A-01D-0969-08	27307447	144824512	104426109	39	105637											
PIAS3	10401	broad.mit.edu	37	chr1	145578690	145578690	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttacctttgccctcacaCcccagcaagtgcagcagatt	6	15	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145578690	T	T	145578690	3	4	108	1	0	0	0	0	1	0	0	0	11972	507	18	4	506	4	PIAS3	1	145578690	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	754178	145578690	103671931	40	105638											
BNIPL	149428	broad.mit.edu	37	chr1	151016365	151016365	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcttggagtcaaggaaatCtagcttcaaatcctgctgtt	8	9	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151016365	T	T	151016365	1	4	108	0	1	0	0	0	0	0	0	0	1486	928	32	4		4	BNIPL	1	151016365	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5437675	151016365	98234256	41	105639											
SCNM1	79005	broad.mit.edu	37	chr1	151139936	151139936	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaggctcagaaggagacaGatggctctaaaagagttttc	13	6	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151139936	T	T	151139936	1	4	108	0	1	0	0	0	0	0	0	0	14039	957	33	3		3	SCNM1	1	151139936	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	123571	151139936	98110685	42	105640											
SELENBP1	8991	broad.mit.edu	37	chr1	151338093	151338093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcatactgcctcaggtcCccatgcagccagttgctgaa	9	13	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151338093	A	A	151338093	2	1	108	1	0	0	0	0	0	0	0	1	14127	610	22	2		2	SELENBP1	1	151338093	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	198157	151338093	97912528	43	105641											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	108	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-44-2659-01A-01D-0969-08	404467	151742560	97508061	44	105642											
TCHHL1	126637	broad.mit.edu	37	chr1	152058156	152058156	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtgatctctatttccaGggactttctattttcatctc	5	11	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152058156	A	A	152058156	2	1	108	1	0	0	0	0	0	0	0	1	15823	991	35	4		4	TCHHL1	1	152058156	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	315596	152058156	97192465	45	105643											
FLG2	388698	broad.mit.edu	37	chr1	152323916	152323916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgtgtgtgtgagacccCtgagtgcacttcactgtcac	11	10	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152323916	A	A	152323916	3	1	108	1	0	0	0	0	1	0	0	0	5980	681	24	2	833	2	FLG2	1	152323916	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	265760	152323916	96926705	46	105644											
PGLYRP4	57115	broad.mit.edu	37	chr1	153312856	153312856	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtacccagacccactcaCttataaccaatgtcgcatga	6	13	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153312856	A	A	153312856	5	1	108	1	0	0	0	0	0	0	1	0	11891	579	20	3	308	3	PGLYRP4	1	153312856	Splice_Site	SNP	C	TCGA-44-2659-01A-01D-0969-08	988940	153312856	95937765	47	105645											
S100A7	6278	broad.mit.edu	37	chr1	153430349	153430349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtagtctgtggctatgtctCccagcaaggacagaaactca	11	10	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153430349	A	A	153430349	3	1	108	1	0	0	0	0	1	0	0	0	13894	855	30	3	70	3	S100A7	1	153430349	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	117493	153430349	95820272	48	105646											
FCRL2	79368	broad.mit.edu	37	chr1	157737060	157737060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcactgcactgggcccCcaggccgttgttggcctcac	11	17	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157737060	A	A	157737060	3	1	108	1	0	0	0	0	1	0	0	0	5852	623	22	2	431	2	FCRL2	1	157737060	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	4306711	157737060	91513561	49	105647											
OR10T2	128360	broad.mit.edu	37	chr1	158368914	158368914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcccatcacagcaatgaGgaggcagttggtgcaagcaa	11	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158368914	T	T	158368914	3	4	108	1	0	0	0	0	1	0	0	0	11013	1000	35	2	603	2	OR10T2	1	158368914	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	631854	158368914	90881707	50	105648											
OR10K2	391107	broad.mit.edu	37	chr1	158390454	158390454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtagcaaatctcagagCaagagaggatggcaaggaag	15	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158390454	A	A	158390454	3	1	108	1	0	0	0	0	1	0	0	0	11008	710	25	3	737	3	OR10K2	1	158390454	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	21540	158390454	90860167	51	105649											
OR10R2	343406	broad.mit.edu	37	chr1	158450337	158450337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgatattcatttgtggaGttcttgtacttgtggttccc	10	6	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450337	T	T	158450337	3	4	108	1	0	0	0	0	1	0	0	0	11011	1029	36	3	672	3	OR10R2	1	158450337	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	59883	158450337	90800284	52	105650											
SPTA1	6708	broad.mit.edu	37	chr1	158605904	158605904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctgagcaaagtatctaGcccatcctaccctccagatt	6	15	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158605904	T	T	158605904	1	4	108	0	1	0	0	0	0	0	0	0	15234	986	34	3		3	SPTA1	1	158605904	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	155567	158605904	90644717	53	105651											
SPTA1	6708	broad.mit.edu	37	chr1	158607828	158607828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggtggcacatactctatCcaggattcctcatcatctag	8	12	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158607828	A	A	158607828	3	1	108	1	0	0	0	0	1	0	0	0	15234	856	30	3	2143	3	SPTA1	1	158607828	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1924	158607828	90642793	54	105652											
SPTA1	6708	broad.mit.edu	37	chr1	158617395	158617395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccttacgatcctttgtaCgcccctgcaggtcttcccag	7	16	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158617395	A	A	158617395	3	1	108	1	0	0	0	0	1	0	0	0	15234	536	19	3	3533	3	SPTA1	1	158617395	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	9567	158617395	90633226	55	105653											
SPTA1	6708	broad.mit.edu	37	chr1	158632333	158632333	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattttttagtataattttTaaaaatatttttatgaagga	4	0	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158632333	C	C	158632333	1	2	108	0	1	0	0	0	0	0	0	0	15234	1769	61	5		5	SPTA1	1	158632333	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	14938	158632333	90618288	56	105654											
OR6K2	81448	broad.mit.edu	37	chr1	158669653	158669653	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacaaagagtaggtggcagAgaagcgtaggtacatgagag	16	4	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158669653	G	G	158669653	3	3	108	1	0	0	0	0	1	0	0	0	11296	304	11	5	188	5	OR6K2	1	158669653	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	37320	158669653	90580968	57	105655											
OR6K3	391114	broad.mit.edu	37	chr1	158687606	158687606	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgagtggaagaaatacatCtgcaagatgcagccagtcat	11	7	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158687606	A	A	158687606	3	1	108	1	0	0	0	0	1	0	0	0	11297	912	32	3	649	3	OR6K3	1	158687606	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	17953	158687606	90563015	58	105656											
CCDC19	25790	broad.mit.edu	37	chr1	159857673	159857673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctgctccatccgcagCttgttggctctctgcaggag	10	15	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159857673	A	A	159857673	3	1	108	1	0	0	0	0	1	0	0	0	2822	796	28	3	1141	3	CCDC19	1	159857673	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1170067	159857673	89392948	59	105657											
ATP1A2	477	broad.mit.edu	37	chr1	160085661	160085662	+	Frame_Shift_Del	DEL	GG	-	-													tctgccccaagatgggccgtGgggtgagtatccctaaagag							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160085662	-	-	160085661	7	5	108	1	0	1	0	1	0	0	0	0	1133	1348	47	0	12	0	ATP1A2	1	160085661	Frame_Shift_Del	DEL	GG	TCGA-44-2659-01A-01D-0969-08	227988	160085661	89164960	60	105658											
CASQ1	844	broad.mit.edu	37	chr1	160164916	160164916	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcaaagactcagagcgtGggtaaccctcagactccact	10	12	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160164916	T	T	160164916	1	4	108	0	1	0	0	0	0	0	0	0	2706	1363	47	2		2	CASQ1	1	160164916	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	79255	160164916	89085705	61	105659											
USP21	27005	broad.mit.edu	37	chr1	161130698	161130698	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagatcatggggttcccCtgcctggctcaccaccccca	10	17	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161130698	T	T	161130698	2	4	108	1	0	0	0	0	0	0	0	1	17179	680	24	4		4	USP21	1	161130698	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	965782	161130698	88119923	62	105660											
HSPA6	3310	broad.mit.edu	37	chr1	161496061	161496061	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcccagagggacagagTggctgccaaaaactcgctgg	15	10	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161496061	A	A	161496061	3	1	108	1	0	0	0	0	1	0	0	0	7484	1696	59	5	1615	5	HSPA6	1	161496061	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	365363	161496061	87754560	63	105661											
ATF6	22926	broad.mit.edu	37	chr1	161762216	161762216	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggttataatttctgagcacGtgctgtttgtcaggaatgtc	11	6	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161762216	A	A	161762216	1	1	108	0	1	0	0	0	0	0	0	0	1088	1160	40	4		4	ATF6	1	161762216	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	266155	161762216	87488405	64	105662											
SELP	6403	broad.mit.edu	37	chr1	169578722	169578722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgagacacacagaaaaaCattaccactgttacagtacc	6	11	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169578722	A	A	169578722	1	1	108	0	1	0	0	0	0	0	0	0	14132	493	17	3		3	SELP	1	169578722	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	7816506	169578722	79671899	65	105663											
KIFAP3	22920	broad.mit.edu	37	chr1	169947178	169947178	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactcaaagatgcatctttTctgaatatgtgaaatattgt	6	6	3	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169947178	A	A	169947178	1	1	108	0	1	0	0	0	0	0	0	0	8381	1798	62	5		5	KIFAP3	1	169947178	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	368456	169947178	79303443	66	105664											
FMO1	2326	broad.mit.edu	37	chr1	171227174	171227174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttagagcagccaagggtGgggtggagcttgtgaataaa	16	4	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171227174	T	T	171227174	1	4	108	0	1	0	0	0	0	0	0	0	6012	1363	47	2		2	FMO1	1	171227174	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1279996	171227174	78023447	67	105665											
MYOC	4653	broad.mit.edu	37	chr1	171605172	171605172	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctgctgtacttatagcGgttcttgaatgggatggtca	12	7	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171605172	A	A	171605172	3	1	108	1	0	0	0	0	1	0	0	0	10180	1116	39	4	110	4	MYOC	1	171605172	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	377998	171605172	77645449	68	105666											
MYOC	4653	broad.mit.edu	37	chr1	171607510	171607510	+	Intron	DEL	A	-	-													gcctcccaagtgtgggtgatAggatagagggctttgttagg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171607510	-	-	171607510	6	5	108	0	1	1	0	1	0	0	0	0	10180	435	15	0		0	MYOC	1	171607510	Intron	DEL	A	TCGA-44-2659-01A-01D-0969-08	2338	171607510	77643111	69	105667											
PAPPA2	60676	broad.mit.edu	37	chr1	176661180	176661180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagttaactcagccatgaaCaagacacaaatttatccctg	5	10	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176661180	A	A	176661180	1	1	108	0	1	0	0	0	0	0	0	0	11527	493	17	3		3	PAPPA2	1	176661180	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5053670	176661180	72589441	70	105668											
FAM5B	57795	broad.mit.edu	37	chr1	177242620	177242620	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actccctactccttccttctCtaggtcaccgagaccaggac	6	17	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177242620	T	T	177242620	1	4	108	0	1	0	0	0	0	0	0	0	5644	928	32	4		4	FAM5B	1	177242620	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	581440	177242620	72008001	71	105669											
RASAL2	9462	broad.mit.edu	37	chr1	178252788	178252789	+	Missense_Mutation	DNP	AC	TT	TT													agcggaagtattgcatcctcAcagacagccagttggtattg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	178252789	TT	TT	178252788	3	4	108	1	0	0	0	0	1	0	0	0	13172	159	6	5	298	5	RASAL2	1	178252788	Missense_Mutation	DNP	AC	TCGA-44-2659-01A-01D-0969-08	1010168	178252788	70997833	72	105670											
LAMC1	3915	broad.mit.edu	37	chr1	183091312	183091312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccaaccctgtccgtgtcCtggaggttcaagttgtgctg	12	11	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183091312	A	A	183091312	3	1	108	1	0	0	0	0	1	0	0	0	8686	681	24	2	2377	2	LAMC1	1	183091312	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	4838524	183091312	66159309	73	105671											
HMCN1	83872	broad.mit.edu	37	chr1	185956655	185956656	+	Frame_Shift_Ins	INS	-	C	C													aagcaagtggaaatcccaaaINSccgtctgtcatctggtccaa							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185956656	C	C	185956655	7	5	108	1	0	1	1	0	0	0	0	0	7287	40	2	0	3105	0	HMCN1	1	185956655	Frame_Shift_Ins	INS	-	TCGA-44-2659-01A-01D-0969-08	2865343	185956655	63293966	74	105672											
PRG4	10216	broad.mit.edu	37	chr1	186269417	186269417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtccccccttgcaccctcGtgcagtgctgtgagactgag	12	14	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186269417	T	T	186269417	1	4	108	0	1	0	0	0	0	0	0	0	12587	1160	40	3		3	PRG4	1	186269417	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	312762	186269417	62981204	75	105673											
CFH	3075	broad.mit.edu	37	chr1	196683021	196683021	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattacatgtgggaaagatgGatggtcagctcaacccacgt	11	8	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196683021	A	A	196683021	3	1	108	1	0	0	0	0	1	0	0	0	3313	1174	41	4	1549	4	CFH	1	196683021	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	10413604	196683021	52567600	76	105674											
CFH	3075	broad.mit.edu	37	chr1	196683123	196683123	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactttagtctttttgtgggGgctgatataatttcatttga	9	4	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196683123	T	T	196683123	1	4	108	0	1	0	0	0	0	0	0	0	3313	1247	43	2		2	CFH	1	196683123	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	102	196683123	52567498	77	105675											
CFH	3075	broad.mit.edu	37	chr1	196697463	196697463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaattttcataaaaatatAtttattttatagcaatagat	3	2	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196697463	G	G	196697463	1	3	108	0	1	0	0	0	0	0	0	0	3313	464	16	5		5	CFH	1	196697463	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	14340	196697463	52553158	78	105676											
F13B	2165	broad.mit.edu	37	chr1	197024971	197024971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatagcttgccaatatccCgtctgcaacagccccattca	6	15	2	0	rs144134146	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197024971	A	A	197024971	3	1	108	1	0	0	0	0	1	0	0	0	5384	652	23	1	777	1	F13B	1	197024971	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	327508	197024971	52225650	79	105677											
F13B	2165	broad.mit.edu	37	chr1	197026086	197026086	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atattcagattaaagtaacaGaatggaaaattttacaccat	5	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197026086	T	T	197026086	1	4	108	0	1	0	0	0	0	0	0	0	5384	957	33	3		3	F13B	1	197026086	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1115	197026086	52224535	80	105678											
CRB1	23418	broad.mit.edu	37	chr1	197396952	197396952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagatgtcatctacattGgtggcctacctgacaagcaa	11	9	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197396952	T	T	197396952	3	4	108	1	0	0	0	0	1	0	0	0	3880	1348	47	2	2523	2	CRB1	1	197396952	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	370866	197396952	51853669	81	105679											
LHX9	56956	broad.mit.edu	37	chr1	197890725	197890725	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacggtacgggcaccgtgcaGaaagggcggccccggaagcg	17	12	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197890725	T	T	197890725	3	4	108	1	0	0	0	0	1	0	0	0	8849	933	33	3	711	3	LHX9	1	197890725	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	493773	197890725	51359896	82	105680											
PTPRC	5788	broad.mit.edu	37	chr1	198703339	198703339	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatagggtttcaaagaaccCaggaaatacattgctgcaca	8	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198703339	G	G	198703339	2	3	108	1	0	0	0	0	0	0	0	1	12905	581	21	4		4	PTPRC	1	198703339	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	812614	198703339	50547282	83	105681											
KIF21B	23046	broad.mit.edu	37	chr1	200978567	200978567	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcccggggtaacagaggTacagatgtgacagccctcaa	11	12	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200978567	A	A	200978567	3	1	108	1	0	0	0	0	1	0	0	0	8359	1638	57	5	4915	5	KIF21B	1	200978567	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	2275228	200978567	48272054	84	105682											
CHIT1	1118	broad.mit.edu	37	chr1	203192633	203192633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccatacctgtaccaggGttgtgaagcgctccttgtct	10	13	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203192633	T	T	203192633	3	4	108	1	0	0	0	0	1	0	0	0	3377	1261	44	3	958	3	CHIT1	1	203192633	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2214066	203192633	46057988	85	105683											
LAX1	54900	broad.mit.edu	37	chr1	203743435	203743435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtcaacatgacagggttgGatctcagtgccatccaggaa	11	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203743435	T	T	203743435	3	4	108	1	0	0	0	0	1	0	0	0	8720	1174	41	3	886	3	LAX1	1	203743435	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	550802	203743435	45507186	86	105684											
TMEM81	388730	broad.mit.edu	37	chr1	205053311	205053311	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgacagtacaggttgtGgcattgatgataactttccc	11	8	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205053311	A	A	205053311	2	1	108	1	0	0	0	0	0	0	0	1	16328	1335	47	4		4	TMEM81	1	205053311	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1309876	205053311	44197310	87	105685											
IL24	11009	broad.mit.edu	37	chr1	207072918	207072918	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggggcagtgggccagTggggcgaggggatgctattt	20	7	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207072918	C	C	207072918	1	2	108	0	1	0	0	0	0	0	0	0	7747	1711	59	5		5	IL24	1	207072918	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	2019607	207072918	42177703	88	105686											
NSL1	25936	broad.mit.edu	37	chr1	212912853	212912853	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattttgttcatttgataaTttttttagcacatagctttt	4	5	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212912853	A	A	212912853	1	1	108	0	1	0	0	0	0	0	0	0	10768	1508	52	5		5	NSL1	1	212912853	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	5839935	212912853	36337768	89	105687											
USH2A	7399	broad.mit.edu	37	chr1	216051312	216051312	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctgtggcatgtgcgtgtGatatatgcgtggaagcataa	14	5	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216051312	T	T	216051312	1	4	108	0	1	0	0	0	0	0	0	0	17162	1305	45	3		3	USH2A	1	216051312	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3138459	216051312	33199309	90	105688											
USH2A	7399	broad.mit.edu	37	chr1	216369952	216369952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcagaaagcatattgatGtcataccccacaacttttcc	5	11	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216369952	T	T	216369952	3	4	108	1	0	0	0	0	1	0	0	0	17162	1368	48	3	11644	3	USH2A	1	216369952	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	318640	216369952	32880669	91	105689											
ESRRG	2104	broad.mit.edu	37	chr1	216741281	216741281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgatgtacatagagccaaCtgggaggatttcgtgttctg	13	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216741281	A	A	216741281	1	1	108	0	1	0	0	0	0	0	0	0	5304	580	20	3		3	ESRRG	1	216741281	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	371329	216741281	32509340	92	105690											
GPATCH2	55105	broad.mit.edu	37	chr1	217784540	217784540	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatttgagatcaatgactaaCttttaatataagtattatat	4	3	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217784540	G	G	217784540	1	3	108	0	1	0	0	0	0	0	0	0	6656	580	20	4		4	GPATCH2	1	217784540	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1043259	217784540	31466081	93	105691											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220373993	220373993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacagagcagggaagctacCctgaactgaacttaacactt	8	10	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220373993	A	A	220373993	1	1	108	0	1	0	0	0	0	0	0	0	13044	638	22	2		2	RAB3GAP2	1	220373993	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2589453	220373993	28876628	94	105692											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220427549	220427549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagataataaggagtatgCggttaatgaagttgtggcag	13	4	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220427549	A	A	220427549	1	1	108	0	1	0	0	0	0	0	0	0	13044	783	27	3		3	RAB3GAP2	1	220427549	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	53556	220427549	28823072	95	105693											
CAPN2	824	broad.mit.edu	37	chr1	223934687	223934687	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtagcggcagcgtctaatCccctcttgtaggatcaacgg	13	11	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223934687	A	A	223934687	1	1	108	0	1	0	0	0	0	0	0	0	2653	870	30	3		3	CAPN2	1	223934687	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3507138	223934687	25315934	96	105694											
TMEM63A	9725	broad.mit.edu	37	chr1	226050438	226050438	+	Intron	DEL	G	-	-													gcgaggccagcaaggaaggaGggggcatcttgcaaggcccg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	226050438	-	-	226050438	6	5	108	0	1	1	0	1	0	0	0	0	16313	1015	35	0		0	TMEM63A	1	226050438	Intron	DEL	G	TCGA-44-2659-01A-01D-0969-08	2115751	226050438	23200183	97	105695											
GALNT2	2590	broad.mit.edu	37	chr1	230391232	230391232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccacttagcaattgaaaGgcgcattccacggatgcagg	10	10	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230391232	T	T	230391232	1	4	108	0	1	0	0	0	0	0	0	0	6275	1015	35	2		2	GALNT2	1	230391232	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4340794	230391232	18859389	98	105696											
RYR2	6262	broad.mit.edu	37	chr1	237540714	237540714	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgacctcatcttagttagCgtgtcctctgaaaggtactt	9	9	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237540714	G	G	237540714	3	3	108	1	0	0	0	0	1	0	0	0	13880	767	27	4	585	4	RYR2	1	237540714	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	7149482	237540714	11709907	99	105697											
RYR2	6262	broad.mit.edu	37	chr1	237711906	237711906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtacatgggaattagCatttggtctgagacttactt	10	6	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237711906	A	A	237711906	1	1	108	0	1	0	0	0	0	0	0	0	13880	725	25	3		3	RYR2	1	237711906	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	171192	237711906	11538715	100	105698											
AHCTF1	25909	broad.mit.edu	37	chr1	247071181	247071181	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatgaagttaattgaaatTaaaagattagtgataacaaa	6	1	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247071181	A	A	247071181	1	1	108	0	1	0	0	0	0	0	0	0	408	1769	61	5		5	AHCTF1	1	247071181	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	9359275	247071181	2179440	101	105699											
OR13G1	441933	broad.mit.edu	37	chr1	247835561	247835561	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctctttcaaatgtatagctGgaagcagggcggatataggt	12	6	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247835561	C	C	247835561	2	2	108	1	0	0	0	0	0	0	0	1	11036	1335	47	4		4	OR13G1	1	247835561	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	764380	247835561	1415060	102	105700											
OR11L1	391189	broad.mit.edu	37	chr1	248005246	248005247	+	5'Flank	DNP	CG	AA	AA													gaaaagcacaggatgcaaggCgcaaatttatcactggtgat							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	248005247	AA	AA	248005246	1	1	108	0	1	0	0	0	0	0	0	0	11024	783	27	3		3	OR11L1	1	248005246	5'Flank	DNP	CG	TCGA-44-2659-01A-01D-0969-08	169685	248005246	1245375	103	105701											
OR2M2	391194	broad.mit.edu	37	chr1	248343333	248343333	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccgacttcatcctccttGgaatcttcaatcacagccca	4	16	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343333	T	T	248343333	4	4	108	1	0	0	0	0	0	1	0	0	11104	1349	47	2	48	2	OR2M2	1	248343333	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	338087	248343333	907288	104	105702											
OR2T27	403239	broad.mit.edu	37	chr1	248813304	248813304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcccctgtgacatccttGttcctaaggctgtaaatgag	11	10	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248813304	T	T	248813304	3	4	108	1	0	0	0	0	1	0	0	0	11115	1368	48	3	74	3	OR2T27	1	248813304	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	469971	248813304	437317	105	105703											
TPO	7173	broad.mit.edu	37	chr2	1459915	1459915	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacagatgatgaccgctattCtgacctcctgatggcatggg	11	11	1	5			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1459915	A	A	1459915	3	1	108	1	0	0	0	0	1	0	0	0	16534	913	32	3	702	3	TPO	2	1459915	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08		1459915	241739458	106	105704											
RSAD2	91543	broad.mit.edu	37	chr2	7036027	7036027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagatgtttctgaagcgagGaggaaaatacatatggagta	12	3	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7036027	A	A	7036027	3	1	108	1	0	0	0	0	1	0	0	0	13806	1174	41	4	1062	4	RSAD2	2	7036027	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	5576112	7036027	236163346	107	105705											
GREB1	9687	broad.mit.edu	37	chr2	11765479	11765479	+	Intron	DEL	G	-	-													tttcaccttccagagtgcatGggcacagcctcttaaaggga							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11765479	-	-	11765479	6	5	108	0	1	1	0	1	0	0	0	0	6826	1363	47	0		0	GREB1	2	11765479	Intron	DEL	G	TCGA-44-2659-01A-01D-0969-08	4729452	11765479	231433894	108	105706											
NBAS	51594	broad.mit.edu	37	chr2	15492159	15492159	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggtgaagcactgatatttTcccctccttcatgatggatc	8	10	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15492159	A	A	15492159	3	1	108	1	0	0	0	0	1	0	0	0	10280	1783	62	5	3051	5	NBAS	2	15492159	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	3726680	15492159	227707214	109	105707											
NBAS	51594	broad.mit.edu	37	chr2	15523532	15523532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagttaaaaaaacaaaaaCtggtaccaccactctatatc	3	9	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15523532	A	A	15523532	1	1	108	0	1	0	0	0	0	0	0	0	10280	580	20	3		3	NBAS	2	15523532	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	31373	15523532	227675841	110	105708											
DPYSL5	56896	broad.mit.edu	37	chr2	27150120	27150120	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttctacttgttctccaGgtgaaagcagaaatggagac	10	10	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27150120	T	T	27150120	5	4	108	1	0	0	0	0	0	0	1	0	4790	1014	35	2	430	2	DPYSL5	2	27150120	Splice_Site	SNP	G	TCGA-44-2659-01A-01D-0969-08	11626588	27150120	216049253	111	105709											
BRE	9577	broad.mit.edu	37	chr2	28521252	28521252	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accagccaactctcacatttCagtccgtttatcactttacc	3	15	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28521252	T	T	28521252	4	4	108	1	0	0	0	0	0	1	0	0	1518	827	29	4	1020	4	BRE	2	28521252	Nonsense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1371132	28521252	214678121	112	105710											
WDR43	23160	broad.mit.edu	37	chr2	29165340	29165340	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttgaaaacgtcaacataaGatcttcctttggcaagcctt	6	9	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29165340	T	T	29165340	1	4	108	0	1	0	0	0	0	0	0	0	17422	957	33	3		3	WDR43	2	29165340	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	644088	29165340	214034033	113	105711											
C2orf71	388939	broad.mit.edu	37	chr2	29295827	29295827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcttgtactggagaggCatgggctccttgcttcgtcc	14	11	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29295827	A	A	29295827	3	1	108	1	0	0	0	0	1	0	0	0	2213	710	25	3	2573	3	C2orf71	2	29295827	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	130487	29295827	213903546	114	105712											
BIRC6	57448	broad.mit.edu	37	chr2	32667152	32667152	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtgcaacgatgtgccatgTtacagttttcagaatttcat	9	7	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32667152	A	A	32667152	3	1	108	1	0	0	0	0	1	0	0	0	1444	1722	60	5	4034	5	BIRC6	2	32667152	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	3371325	32667152	210532221	115	105713											
FAM98A	25940	broad.mit.edu	37	chr2	33810265	33810265	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgtccagcctccttgatGcttatttcctcttcctcccc	4	17	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33810265	A	A	33810265	3	1	108	1	0	0	0	0	1	0	0	0	5713	1319	46	4	425	4	FAM98A	2	33810265	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1143113	33810265	209389108	116	105714											
FAM98A	25940	broad.mit.edu	37	chr2	33810355	33810355	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgacctcctcgtcctcCgtatgaggaatgttcatagc	8	12	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33810355	A	A	33810355	4	1	108	1	0	0	0	0	0	1	0	0	5713	661	23	1	515	1	FAM98A	2	33810355	Nonsense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	90	33810355	209389018	117	105715											
SLC8A1	6546	broad.mit.edu	37	chr2	40655830	40655830	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcgtggtcatcatcaaaaaTagttacagtggcagtggagg	13	6	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40655830	A	A	40655830	3	1	108	1	0	0	0	0	1	0	0	0	14820	1406	49	5	1478	5	SLC8A1	2	40655830	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	6845475	40655830	202543543	118	105716											
LRPPRC	10128	broad.mit.edu	37	chr2	44204557	44204557	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcgctcagacctatctaCacagatactctgtcacacag	7	13	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44204557	T	T	44204557	1	4	108	0	1	0	0	0	0	0	0	0	9052	493	17	4		4	LRPPRC	2	44204557	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3548727	44204557	198994816	119	105717											
MSH2	4436	broad.mit.edu	37	chr2	47656893	47656893	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcagattgaatttagtGgaagcttttgtagaagatgc	10	3	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47656893	T	T	47656893	2	4	108	1	0	0	0	0	0	0	0	1	9964	1335	47	2		2	MSH2	2	47656893	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	3452336	47656893	195542480	120	105718											
NRXN1	9378	broad.mit.edu	37	chr2	50318334	50318334	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcattacattcacatgactcTaaagtccaataaatagttga	5	8	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50318334	A	A	50318334	1	1	108	0	1	0	0	0	0	0	0	0	10760	1537	53	5		5	NRXN1	2	50318334	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	2661441	50318334	192881039	121	105719											
NRXN1	9378	broad.mit.edu	37	chr2	50765580	50765580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccggatatctttgctttGgccatcgatgaacaaatccc	8	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50765580	T	T	50765580	3	4	108	1	0	0	0	0	1	0	0	0	10760	1357	47	2	2888	2	NRXN1	2	50765580	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	447246	50765580	192433793	122	105720											
OTX1	5013	broad.mit.edu	37	chr2	63282626	63282626	+	Intron	DEL	C	-	-													acccactctcccccatccggCccactgcaggtctggttcaa							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63282626	-	-	63282626	6	5	108	0	1	1	0	1	0	0	0	0	11414	754	26	0		0	OTX1	2	63282626	Intron	DEL	C	TCGA-44-2659-01A-01D-0969-08	12517046	63282626	179916747	123	105721											
ACTG2	72	broad.mit.edu	37	chr2	74146762	74146762	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttaccagtcatgaaacaTtaaaacctacaagccttact	4	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74146762	C	C	74146762	1	2	108	0	1	0	0	0	0	0	0	0	197	1508	52	5		5	ACTG2	2	74146762	3'UTR	SNP	T	TCGA-44-2659-01A-01D-0969-08	10864136	74146762	169052611	124	105722											
WDR54	84058	broad.mit.edu	37	chr2	74650852	74650852	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggctagtgaatgaagggGcatggccgttggagcagtga	17	6	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74650852	A	A	74650852	1	1	108	0	1	0	0	0	0	0	0	0	17433	1218	42	4		4	WDR54	2	74650852	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	504090	74650852	168548521	125	105723											
LRRTM4	80059	broad.mit.edu	37	chr2	76975866	76975867	+	Missense_Mutation	DNP	GG	TT	TT													atggccggtgctgccgacctGgcgatggtggcgatgaagct							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	76975867	TT	TT	76975866	3	4	108	1	0	0	0	0	1	0	0	0	9129	1335	47	2	48	2	LRRTM4	2	76975866	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	2325014	76975866	166223507	126	105724											
KIAA1310	55683	broad.mit.edu	37	chr2	97274401	97274401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggacacactggagagatCctgagtaaggtgagaaggtc	15	7	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97274401	A	A	97274401	3	1	108	1	0	0	0	0	1	0	0	0	8292	869	30	3	1083	3	KIAA1310	2	97274401	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	20298535	97274401	145924972	127	105725											
FHL2	2274	broad.mit.edu	37	chr2	106015303	106015303	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgctctcctctcaccagtCtccccaactccggctctgct	5	20	5	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106015303	T	T	106015303	1	4	108	0	1	0	0	0	0	0	0	0	5936	928	32	4		4	FHL2	2	106015303	5'Flank	SNP	C	TCGA-44-2659-01A-01D-0969-08	8740902	106015303	137184070	128	105726											
EDAR	10913	broad.mit.edu	37	chr2	109547217	109547217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccatgagaccctatgaagGgagctaccaacgaaatcaat	8	10	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109547217	T	T	109547217	1	4	108	0	1	0	0	0	0	0	0	0	4945	1247	43	2		2	EDAR	2	109547217	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3531914	109547217	133652156	129	105727											
ZC3H6	376940	broad.mit.edu	37	chr2	113082754	113082754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagcacccaacctcataGggcaccaagcaaggaagaag	9	13	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113082754	T	T	113082754	3	4	108	1	0	0	0	0	1	0	0	0	17697	1000	35	2	2108	2	ZC3H6	2	113082754	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	3535537	113082754	130116619	130	105728											
INHBB	3625	broad.mit.edu	37	chr2	121107308	121107308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaccagtaccgcatgcGgggtctgaaccccggcacgg	15	13	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121107308	T	T	121107308	3	4	108	1	0	0	0	0	1	0	0	0	7812	1116	39	1	1088	1	INHBB	2	121107308	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	8024554	121107308	122092065	131	105729											
MYO7B	4648	broad.mit.edu	37	chr2	128381727	128381727	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccatcgcccggtgtgagcaGatggcccaggagaggggcga	18	11	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128381727	T	T	128381727	3	4	108	1	0	0	0	0	1	0	0	0	10177	933	33	3	3911	3	MYO7B	2	128381727	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	7274419	128381727	114817646	132	105730											
FAM123C	205147	broad.mit.edu	37	chr2	131521360	131521360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagctgtgggcacaccCgggcaccacaggcctgctcg	15	15	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131521360	T	T	131521360	3	4	108	1	0	0	0	0	1	0	0	0	5470	652	23	4	1717	4	FAM123C	2	131521360	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	3139633	131521360	111678013	133	105731											
NCKAP5	344148	broad.mit.edu	37	chr2	133636514	133636514	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaagatacaaaaataacaCaaataaatcaatgaaatgtt	4	4	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133636514	G	G	133636514	1	3	108	0	1	0	0	0	0	0	0	0	10318	493	17	4		4	NCKAP5	2	133636514	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2115154	133636514	109562859	134	105732											
THSD7B	80731	broad.mit.edu	37	chr2	137852371	137852371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagagttttttttctcatGgtaggcactttataatgtta	7	5	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137852371	T	T	137852371	1	4	108	0	1	0	0	0	0	0	0	0	16003	1363	47	2		2	THSD7B	2	137852371	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4215857	137852371	105347002	135	105733											
LRP1B	53353	broad.mit.edu	37	chr2	141253040	141253040	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattttgatttttcagaagcAtcaaggaggagtgaattcaa	9	4	3	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141253040	T	T	141253040	1	4	108	0	1	0	0	0	0	0	0	0	9042	232	8	5		5	LRP1B	2	141253040	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	3400669	141253040	101946333	136	105734											
LRP1B	53353	broad.mit.edu	37	chr2	141267498	141267498	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggccagtgttcataccGcagcctgctgtggaaagctc	11	14	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141267498	A	A	141267498	2	1	108	1	0	0	0	0	0	0	0	1	9042	1101	38	4		4	LRP1B	2	141267498	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	14458	141267498	101931875	137	105735											
KYNU	8942	broad.mit.edu	37	chr2	143746581	143746581	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttattcacctgaaaatCaaataccacctgtgagaaga	5	8	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143746581	G	G	143746581	1	3	108	0	1	0	0	0	0	0	0	0	8659	841	29	4		4	KYNU	2	143746581	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2479083	143746581	99452792	138	105736											
ORC4L	5000	broad.mit.edu	37	chr2	148716452	148716452	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaactaaatatgaaaagttTatgaaataataataggtaaa	5	1	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148716452	A	A	148716452	1	1	108	0	1	0	0	0	0	0	0	0	11358	1769	61	5		5	ORC4L	2	148716452	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	4969871	148716452	94482921	139	105737											
SCN3A	6328	broad.mit.edu	37	chr2	165984466	165984466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttttggaaacactccCgcatcttatttttcacataa	5	10	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165984466	A	A	165984466	3	1	108	1	0	0	0	0	1	0	0	0	14031	652	23	1	2978	1	SCN3A	2	165984466	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	17268014	165984466	77214907	140	105738											
LRP2	4036	broad.mit.edu	37	chr2	170050428	170050428	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatcaatagcattctcagTgaaaaaaagtggtttacagt	8	5	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170050428	A	A	170050428	1	1	108	0	1	0	0	0	0	0	0	0	9043	1711	59	5		5	LRP2	2	170050428	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	4065962	170050428	73148945	141	105739											
PPIG	9360	broad.mit.edu	37	chr2	170493474	170493475	+	Missense_Mutation	DNP	GG	CT	CT													aagagaacgaagcagaagtaGggacagaagcagaagagtgc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	170493475	CT	CT	170493474	3	2	108	1	0	0	0	0	1	0	0	0	12425	1000	35	4	1752	4	PPIG	2	170493474	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	443046	170493474	72705899	142	105740											
MYO3B	140469	broad.mit.edu	37	chr2	171458581	171458581	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttcctttatctttagcaGacatggccttccacctctct	4	13	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171458581	T	T	171458581	1	4	108	0	1	0	0	0	0	0	0	0	10171	957	33	3		3	MYO3B	2	171458581	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	965107	171458581	71740792	143	105741											
TTN	7273	broad.mit.edu	37	chr2	179542347	179542347	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagaagagctgctataCctggtgcaggtactggcacc	11	11	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179542347	A	A	179542347	5	1	108	1	0	0	0	0	0	0	1	0	16861	521	18	3	70105	3	TTN	2	179542347	Splice_Site	SNP	C	TCGA-44-2659-01A-01D-0969-08	8083766	179542347	63657026	144	105742											
TTN	7273	broad.mit.edu	37	chr2	179590784	179590784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtggctctgcaaaaaaCaagaatttctcatgaattgg	9	7	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179590784	A	A	179590784	1	1	108	0	1	0	0	0	0	0	0	0	16861	493	17	3		3	TTN	2	179590784	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	48437	179590784	63608589	145	105743											
SF3B1	23451	broad.mit.edu	37	chr2	198266709	198266709	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaattggtggatttacCtttcctctgtgttggcggat	12	6	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198266709	G	G	198266709	3	3	108	1	0	0	0	0	1	0	0	0	14262	695	24	4	1735	4	SF3B1	2	198266709	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	18675925	198266709	44932664	146	105744											
BMPR2	659	broad.mit.edu	37	chr2	203242410	203242410	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcggagctgcgacccggtGcctgcgcgcctgccccatgc	14	18	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203242410	A	A	203242410	1	1	108	0	1	0	0	0	0	0	0	0	1477	1334	46	4		4	BMPR2	2	203242410	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4975701	203242410	39956963	147	105745											
BMPR2	659	broad.mit.edu	37	chr2	203378405	203378405	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttaacaaaatacttttttAaaaaaaaatgacatttcaaa	1	4	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203378405	T	T	203378405	1	4	108	0	1	0	0	0	0	0	0	0	1477	377	13	5		5	BMPR2	2	203378405	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	135995	203378405	39820968	148	105746											
ADAM23	8745	broad.mit.edu	37	chr2	207395588	207395588	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttagatgcagaaatcacTctattttctttcctttgtag	6	8	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207395588	A	A	207395588	1	1	108	0	1	0	0	0	0	0	0	0	245	1566	54	5		5	ADAM23	2	207395588	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	4017183	207395588	35803785	149	105747											
ADAM23	8745	broad.mit.edu	37	chr2	207408166	207408166	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttaacttatttcaaacttaGagtagtaccctgagttttga	7	6	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207408166	T	T	207408166	1	4	108	0	1	0	0	0	0	0	0	0	245	957	33	3		3	ADAM23	2	207408166	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	12578	207408166	35791207	150	105748											
MAP2	4133	broad.mit.edu	37	chr2	210574656	210574656	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtcagagccaattcgcaGagcagggaagagtggtacct	15	8	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210574656	T	T	210574656	3	4	108	1	0	0	0	0	1	0	0	0	9327	942	33	3	4960	3	MAP2	2	210574656	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	3166490	210574656	32624717	151	105749											
SPAG16	79582	broad.mit.edu	37	chr2	214162030	214162030	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaggtgaagaagatctGgcaaaagcaattcagatggc	12	7	2	5			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214162030	T	T	214162030	2	4	108	1	0	0	0	0	0	0	0	1	15094	1335	47	2		2	SPAG16	2	214162030	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	3587374	214162030	29037343	152	105750											
SLC4A3	6508	broad.mit.edu	37	chr2	220497826	220497826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagcctctgcttgaatGccacaagtgacagagagctc	9	14	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220497826	T	T	220497826	1	4	108	0	1	0	0	0	0	0	0	0	14769	1334	46	3		3	SLC4A3	2	220497826	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	6335796	220497826	22701547	153	105751											
INPP5D	3635	broad.mit.edu	37	chr2	234112954	234112954	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccccgccctgcccggaacCcggcatcttgtcgcccagca	9	21	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234112954	T	T	234112954	3	4	108	1	0	0	0	0	1	0	0	0	7826	623	22	4	2768	4	INPP5D	2	234112954	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	13615128	234112954	9086419	154	105752											
UGT1A10	54575	broad.mit.edu	37	chr2	234545808	234545808	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatggaaccacatcgtgcacTtggaggaccatttattttgc	9	9	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234545808	A	A	234545808	3	1	108	1	0	0	0	0	1	0	0	0	17071	1606	56	5	642	5	UGT1A10	2	234545808	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	432854	234545808	8653565	155	105753											
UGT1A8	54576	broad.mit.edu	37	chr2	234557064	234557064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtcctagatatgtctcaGggttttcggatgctgtgact	11	8	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234557064	T	T	234557064	1	4	108	0	1	0	0	0	0	0	0	0	17077	1015	35	2		2	UGT1A8	2	234557064	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	11256	234557064	8642309	156	105754											
TRPM8	79054	broad.mit.edu	37	chr2	234862447	234862447	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcagaaatgagaagctgatCcggaactccactacaggtgg	11	9	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234862447	A	A	234862447	1	1	108	0	1	0	0	0	0	0	0	0	16717	870	30	3		3	TRPM8	2	234862447	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	305383	234862447	8336926	157	105755											
SRGAP3	9901	broad.mit.edu	37	chr3	9034826	9034826	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatatgtgtctgaggggcTgaattaacacaacttatggt	11	6	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9034826	C	C	9034826	1	2	108	0	1	0	0	0	0	0	0	0	15265	1595	55	5		5	SRGAP3	3	9034826	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08		9034826	188987604	158	105756											
ATP2B2	491	broad.mit.edu	37	chr3	10420009	10420009	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctccttcttgtgcatgctGgccttcttcctgtcgtcagc	8	14	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10420009	A	A	10420009	2	1	108	1	0	0	0	0	0	0	0	1	1144	1335	47	4		4	ATP2B2	3	10420009	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1385183	10420009	187602421	159	105757											
MKRN2	23609	broad.mit.edu	37	chr3	12623216	12623216	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgacctacctctggcGtaagggtggtaaggatggag	17	7	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12623216	A	A	12623216	1	1	108	0	1	0	0	0	0	0	0	0	9700	1160	40	4		4	MKRN2	3	12623216	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2203207	12623216	185399214	160	105758											
TMEM40	55287	broad.mit.edu	37	chr3	12777053	12777053	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaagactttaaaagttaCctgtcagcctaaacttctgg	8	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12777053	T	T	12777053	5	4	108	1	0	0	0	0	0	0	1	0	16286	521	18	4	26	4	TMEM40	3	12777053	Splice_Site	SNP	C	TCGA-44-2659-01A-01D-0969-08	153837	12777053	185245377	161	105759											
FBLN2	2199	broad.mit.edu	37	chr3	13679148	13679148	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaccagctcaacttccagaCgggcctcctggtgcctgcgc	10	17	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13679148	T	T	13679148	3	4	108	1	0	0	0	0	1	0	0	0	5756	536	19	4	2181	4	FBLN2	3	13679148	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	902095	13679148	184343282	162	105760											
CHCHD4	131474	broad.mit.edu	37	chr3	14154566	14154566	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtctacacagtctgaccCcttgatctcctccgtgctat	7	15	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14154566	T	T	14154566	3	4	108	1	0	0	0	0	1	0	0	0	3349	623	22	4	182	4	CHCHD4	3	14154566	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	475418	14154566	183867864	163	105761											
GALNTL2	117248	broad.mit.edu	37	chr3	16252591	16252591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgcctgctgtgctctgGgttctgaactgcagtgtcct	12	13	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16252591	T	T	16252591	1	4	108	0	1	0	0	0	0	0	0	0	6284	1247	43	2		2	GALNTL2	3	16252591	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2098025	16252591	181769839	164	105762											
SATB1	6304	broad.mit.edu	37	chr3	18457731	18457731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccctaccacaagcagtacCgttatttctgtttgaatgat	6	11	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18457731	A	A	18457731	1	1	108	0	1	0	0	0	0	0	0	0	13965	667	23	1		1	SATB1	3	18457731	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2205140	18457731	179564699	165	105763											
KAT2B	8850	broad.mit.edu	37	chr3	20153368	20153368	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcataaataacaagatcGgaaatgacagaagaaacatt	7	7	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20153368	A	A	20153368	1	1	108	0	1	0	0	0	0	0	0	0	8052	1131	39	4		4	KAT2B	3	20153368	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1695637	20153368	177869062	166	105764											
AZI2	64343	broad.mit.edu	37	chr3	28381959	28381959	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgaatccttaagtcgTtttttgatgtcttcatatgc	6	8	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28381959	C	C	28381959	2	2	108	1	0	0	0	0	0	0	0	1	1246	1722	60	5		5	AZI2	3	28381959	Silent	SNP	T	TCGA-44-2659-01A-01D-0969-08	8228591	28381959	169640471	167	105765											
CRTAP	10491	broad.mit.edu	37	chr3	33175607	33175607	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaccccatatcctgttcCtccctcctcccagttctaag	3	17	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33175607	T	T	33175607	1	4	108	0	1	0	0	0	0	0	0	0	3930	696	24	4		4	CRTAP	3	33175607	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	4793648	33175607	164846823	168	105766											
VILL	50853	broad.mit.edu	37	chr3	38040837	38040837	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtccccccttcagataaatcGattcatgtaaagctggacgt	8	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38040837	T	T	38040837	2	4	108	1	0	0	0	0	0	0	0	1	17292	1045	37	3		3	VILL	3	38040837	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	4865230	38040837	159981593	169	105767											
SCN5A	6331	broad.mit.edu	37	chr3	38622447	38622447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggactcctcctccgtgCccaggctgttctcctcatct	8	17	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38622447	A	A	38622447	3	1	108	1	0	0	0	0	1	0	0	0	14035	739	26	3	2895	3	SCN5A	3	38622447	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	581610	38622447	159399983	170	105768											
SCN10A	6336	broad.mit.edu	37	chr3	38835559	38835559	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagtggacataaccacagAgaggtgacagcttgcccact	11	10	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38835559	C	C	38835559	1	2	108	0	1	0	0	0	0	0	0	0	14025	319	11	5		5	SCN10A	3	38835559	5'Flank	SNP	A	TCGA-44-2659-01A-01D-0969-08	213112	38835559	159186871	171	105769											
ZNF621	285268	broad.mit.edu	37	chr3	40573808	40573808	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaagccctttaagtgtaagGagtgtggcaaagctttcaag	11	6	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40573808	C	C	40573808	3	2	108	1	0	0	0	0	1	0	0	0	18172	1175	41	4	561	4	ZNF621	3	40573808	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1738249	40573808	157448622	172	105770											
LTF	4057	broad.mit.edu	37	chr3	46496816	46496817	+	Nonsense_Mutation	DNP	CC	AA	AA													agagtagctgaagtacggttCctgggaggagaaggcacatt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	46496817	AA	AA	46496816	4	1	108	1	0	0	0	0	0	1	0	0	9166	864	30	3	1568	3	LTF	3	46496816	Nonsense_Mutation	DNP	CC	TCGA-44-2659-01A-01D-0969-08	5923008	46496816	151525614	173	105771											
SMARCC1	6599	broad.mit.edu	37	chr3	47632266	47632266	+	Frame_Shift_Del	DEL	G	-	-													tggatgttggctgcaacagtGggaatcatgcggcctggcat							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47632266	-	-	47632266	7	5	108	1	0	1	0	1	0	0	0	0	14889	1335	47	0	220	0	SMARCC1	3	47632266	Frame_Shift_Del	DEL	G	TCGA-44-2659-01A-01D-0969-08	1135450	47632266	150390164	174	105772											
COL7A1	1294	broad.mit.edu	37	chr3	48618353	48618353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttttccaggcaaacccgGgtcaccctggtgatagagag	12	11	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48618353	T	T	48618353	3	4	108	1	0	0	0	0	1	0	0	0	3736	1232	43	2	4156	2	COL7A1	3	48618353	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	986087	48618353	149404077	175	105773											
CDHR4	389118	broad.mit.edu	37	chr3	49836271	49836271	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcttacctgcgctccgtgGagttctaggcctgggaggag	17	10	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49836271	T	T	49836271	2	4	108	1	0	0	0	0	0	0	0	1	3151	1161	41	3		3	CDHR4	3	49836271	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1217918	49836271	148186159	176	105774											
IFRD2	7866	broad.mit.edu	37	chr3	50326124	50326124	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagccgaagcgcactatctCttcttcgcattcaccgccct	6	16	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50326124	A	A	50326124	4	1	108	1	0	0	0	0	0	1	0	0	7624	922	32	3	298	3	IFRD2	3	50326124	Nonsense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	489853	50326124	147696306	177	105775											
ROBO2	6092	broad.mit.edu	37	chr3	77684057	77684057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcaaagacctcgacctaCcagcccattttctactgaca	4	16	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77684057	A	A	77684057	3	1	108	1	0	0	0	0	1	0	0	0	13625	507	18	3	3893	3	ROBO2	3	77684057	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	27357933	77684057	120338373	178	105776											
ROBO1	6091	broad.mit.edu	37	chr3	78688790	78688790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagcattggataaaataCgggtcaaattttatctttcc	7	7	3	0	rs73850744	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78688790	A	A	78688790	1	1	108	0	1	0	0	0	0	0	0	0	13624	551	19	3		3	ROBO1	3	78688790	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1004733	78688790	119333640	179	105777											
VGLL3	389136	broad.mit.edu	37	chr3	87018101	87018101	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgggccagtctgatgCaggttgtgtcccggccaagg	18	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87018101	A	A	87018101	2	1	108	1	0	0	0	0	0	0	0	1	17287	697	25	3		3	VGLL3	3	87018101	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	8329311	87018101	111004329	180	105778											
GPR128	84873	broad.mit.edu	37	chr3	100373932	100373932	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgacatttacctggaacGcactcagcgctgcacagctc	9	13	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100373932	A	A	100373932	3	1	108	1	0	0	0	0	1	0	0	0	6706	1087	38	4	1679	4	GPR128	3	100373932	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	13355831	100373932	97648498	181	105779											
GPR128	84873	broad.mit.edu	37	chr3	100387664	100387664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatcatttttccacctggGgcataatattgttaagtgaa	8	7	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100387664	T	T	100387664	1	4	108	0	1	0	0	0	0	0	0	0	6706	1247	43	2		2	GPR128	3	100387664	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	13732	100387664	97634766	182	105780											
GUCA1C	9626	broad.mit.edu	37	chr3	108627059	108627059	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctaaagtcaattcccctGgaaaataataaacagttaat	4	8	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108627059	A	A	108627059	1	1	108	0	1	0	0	0	0	0	0	0	6955	1363	47	4		4	GUCA1C	3	108627059	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	8239395	108627059	89395371	183	105781											
KIAA2018	205717	broad.mit.edu	37	chr3	113388977	113388977	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacttcttacctgcttcagGgcaggagaacatgggatcag	12	9	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113388977	A	A	113388977	2	1	108	1	0	0	0	0	0	0	0	1	8338	1219	43	4		4	KIAA2018	3	113388977	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	4761918	113388977	84633453	184	105782											
IGSF11	152404	broad.mit.edu	37	chr3	118624531	118624531	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacctgaagacagggcactGatgttccggatggtgactgt	13	8	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118624531	T	T	118624531	2	4	108	1	0	0	0	0	0	0	0	1	7668	1280	45	3		3	IGSF11	3	118624531	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	5235554	118624531	79397899	185	105783											
C3orf1	51300	broad.mit.edu	37	chr3	119222382	119222382	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaattaactttagcaaTctgcacatcgtgctgccaca	5	10	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119222382	G	G	119222382	3	3	108	1	0	0	0	0	1	0	0	0	2228	1435	50	5	374	5	C3orf1	3	119222382	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	597851	119222382	78800048	186	105784											
STXBP5L	9515	broad.mit.edu	37	chr3	120952514	120952514	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggagaaagatctcattgTagttgatctgacacaaagca	9	7	3	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120952514	C	C	120952514	3	2	108	1	0	0	0	0	1	0	0	0	15475	1638	57	5	1205	5	STXBP5L	3	120952514	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	1730132	120952514	77069916	187	105785											
SLC12A8	84561	broad.mit.edu	37	chr3	124802813	124802813	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtggcgaagtctgcattcTcctgggtgagctgagtcatc	14	9	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124802813	A	A	124802813	3	1	108	1	0	0	0	0	1	0	0	0	14502	1551	54	5	82	5	SLC12A8	3	124802813	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	3850299	124802813	73219617	188	105786											
UROC1	131669	broad.mit.edu	37	chr3	126208253	126208253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaagctgtcagccaacaGtgtccaccatggcttcctgg	10	13	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126208253	T	T	126208253	1	4	108	0	1	0	0	0	0	0	0	0	17154	1044	36	3		3	UROC1	3	126208253	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1405440	126208253	71814177	189	105787											
UROC1	131669	broad.mit.edu	37	chr3	126223026	126223026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggtgtcatcccctgtaGgtcccttgcttttctataac	9	11	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126223026	T	T	126223026	1	4	108	0	1	0	0	0	0	0	0	0	17154	1015	35	2		2	UROC1	3	126223026	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	14773	126223026	71799404	190	105788											
UROC1	131669	broad.mit.edu	37	chr3	126224959	126224959	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattagtatttaactacccaAtaggcattaatatattctcc	3	8	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126224959	T	T	126224959	1	4	108	0	1	0	0	0	0	0	0	0	17154	116	4	5		5	UROC1	3	126224959	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	1933	126224959	71797471	191	105789											
SLCO2A1	6578	broad.mit.edu	37	chr3	133692425	133692425	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctggagtggtatccaCtgccctaggagtatccccac	9	14	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133692425	A	A	133692425	1	1	108	0	1	0	0	0	0	0	0	0	14840	580	20	3		3	SLCO2A1	3	133692425	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	7467466	133692425	64330005	192	105790											
DZIP1L	199221	broad.mit.edu	37	chr3	137816623	137816623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaccttctgccacgcctgCatgcctgcgctggatgtggc	11	16	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137816623	T	T	137816623	3	4	108	1	0	0	0	0	1	0	0	0	4904	710	25	4	1800	4	DZIP1L	3	137816623	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	4124198	137816623	60205807	193	105791											
PRR23A	729627	broad.mit.edu	37	chr3	138724401	138724401	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggactccccacgcgcggaGagggaggtagaggttggaga	18	9	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138724401	T	T	138724401	3	4	108	1	0	0	0	0	1	0	0	0	12700	942	33	3	94	3	PRR23A	3	138724401	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	907778	138724401	59298029	194	105792											
ZIC1	7545	broad.mit.edu	37	chr3	147128282	147128282	+	Missense_Mutation	SNP	T	A	A													tgctgcatcggccgggggctTcgggggcccacacggccaca							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147128282	A	A	147128282	3	1	108	1	0	0	0	0	1	0	0	0	17804	1783	62	5	385	5	ZIC1	3	147128282	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	8403881	147128282	50894148	195	105793	460	2									
ZIC1	7545	broad.mit.edu	37	chr3	147128284	147128284	+	Missense_Mutation	SNP	G	T	T													ctgcatcggccgggggcttcGggggcccacacggccacacg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147128284	T	T	147128284	3	4	108	1	0	0	0	0	1	0	0	0	17804	1116	39	1	387	1	ZIC1	3	147128284	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2	147128284	50894146	196	105794	460	2									
CPB1	1360	broad.mit.edu	37	chr3	148563203	148563203	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgccattaacatcatatgtTtttccagaaattggagcctc	6	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148563203	A	A	148563203	1	1	108	0	1	0	0	0	0	0	0	0	3828	1856	64	5		5	CPB1	3	148563203	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	1434919	148563203	49459227	197	105795											
PTX3	5806	broad.mit.edu	37	chr3	157154711	157154711	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgtggaaagaactttgcGtctctccagcaatgcatctc	9	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157154711	A	A	157154711	1	1	108	0	1	0	0	0	0	0	0	0	12930	1160	40	4		4	PTX3	3	157154711	5'UTR	SNP	G	TCGA-44-2659-01A-01D-0969-08	8591508	157154711	40867719	198	105796											
MFSD1	64747	broad.mit.edu	37	chr3	158537432	158537432	+	Intron	DEL	A	-	-													tttcttttttttttttttttAtttagggggtataacgtgta							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158537432	-	-	158537432	6	5	108	0	1	1	0	1	0	0	0	0	9620	464	16	0		0	MFSD1	3	158537432	Intron	DEL	A	TCGA-44-2659-01A-01D-0969-08	1382721	158537432	39484998	199	105797											
NMD3	51068	broad.mit.edu	37	chr3	160945076	160945076	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggatacagtgtgctttagAatccagggaacttcttgctt	10	7	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160945076	T	T	160945076	3	4	108	1	0	0	0	0	1	0	0	0	10583	246	9	5	231	5	NMD3	3	160945076	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	2407644	160945076	37077354	200	105798											
BCHE	590	broad.mit.edu	37	chr3	165548021	165548021	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttcaacgttctgttcctAgcttcataaagagatgttac	7	8	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165548021	T	T	165548021	2	4	108	1	0	0	0	0	0	0	0	1	1363	407	15	5		5	BCHE	3	165548021	Silent	SNP	A	TCGA-44-2659-01A-01D-0969-08	4602945	165548021	32474409	201	105799											
SLC7A14	57709	broad.mit.edu	37	chr3	170218853	170218853	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagaactcatttatgtggcTtggtaagtttgcatgttgag	13	4	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170218853	A	A	170218853	1	1	108	0	1	0	0	0	0	0	0	0	14810	1624	56	5		5	SLC7A14	3	170218853	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	4670832	170218853	27803577	202	105800											
SPATA16	83893	broad.mit.edu	37	chr3	172643082	172643082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaacattttttggggccCaaaactcatcacaggctact	6	12	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172643082	A	A	172643082	1	1	108	0	1	0	0	0	0	0	0	0	15117	609	21	2		2	SPATA16	3	172643082	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2424229	172643082	25379348	203	105801											
NLGN1	22871	broad.mit.edu	37	chr3	173993445	173993445	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaactcaatagtttaaagctTtgtttcttcagtttttctgt	6	6	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173993445	C	C	173993445	1	2	108	0	1	0	0	0	0	0	0	0	10556	1856	64	5		5	NLGN1	3	173993445	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	1350363	173993445	24028985	204	105802											
TTC14	151613	broad.mit.edu	37	chr3	180327803	180327803	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttggaggtaggtctgaaGatccaagagatttttataac	10	4	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180327803	T	T	180327803	3	4	108	1	0	0	0	0	1	0	0	0	16807	942	33	3	1862	3	TTC14	3	180327803	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	6334358	180327803	17694627	205	105803											
ABCF3	55324	broad.mit.edu	37	chr3	183906244	183906244	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagccgctgtcgcttacagAgcgcctgccgtcctggaaca	12	15	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183906244	T	T	183906244	1	4	108	0	1	0	0	0	0	0	0	0	67	319	11	5		5	ABCF3	3	183906244	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	3578441	183906244	14116186	206	105804											
ECE2	9718	broad.mit.edu	37	chr3	184001501	184001501	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagatattgggcagaggtGgtggtaagaacagatctcag	15	4	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184001501	C	C	184001501	1	2	108	0	1	0	0	0	0	0	0	0	4930	1363	47	4		4	ECE2	3	184001501	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	95257	184001501	14020929	207	105805											
AHSG	197	broad.mit.edu	37	chr3	186335082	186335082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgccctggccgccttcaaCgctcagaacaacggctccaa	9	17	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186335082	A	A	186335082	3	1	108	1	0	0	0	0	1	0	0	0	420	535	19	3	530	3	AHSG	3	186335082	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2333581	186335082	11687348	208	105806											
OPA1	4976	broad.mit.edu	37	chr3	193332874	193332874	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccaattattatatcatgAttaagtttctatagcataaa	3	5	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193332874	T	T	193332874	1	4	108	0	1	0	0	0	0	0	0	0	10965	348	12	5		5	OPA1	3	193332874	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	6997792	193332874	4689556	209	105807											
LETM1	3954	broad.mit.edu	37	chr4	1824881	1824881	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaagagggtacatctgtGggtgagcccagaagccacca	13	10	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1824881	A	A	1824881	1	1	108	0	1	0	0	0	0	0	0	0	8806	1363	47	4		4	LETM1	4	1824881	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08		1824881	189329395	210	105808											
C4orf50	389197	broad.mit.edu	37	chr4	5981934	5981934	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctggaggcgggtggcCtcgtccagagacgcctggtg	16	13	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5981934	G	G	5981934	3	3	108	1	0	0	0	0	1	0	0	0	2299	680	24	4	719	4	C4orf50	4	5981934	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	4157053	5981934	185172342	211	105809											
JAKMIP1	152789	broad.mit.edu	37	chr4	6058394	6058394	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccaactgccctgcggcTgtgtgcttccctgaggtggg	15	13	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6058394	A	A	6058394	1	1	108	0	1	0	0	0	0	0	0	0	8010	1595	55	5		5	JAKMIP1	4	6058394	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	76460	6058394	185095882	212	105810											
PDS5A	23244	broad.mit.edu	37	chr4	39851298	39851298	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaacatattaaagagacTagacgtagatagatgcttta	8	4	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39851298	A	A	39851298	1	1	108	0	1	0	0	0	0	0	0	0	11785	1537	53	5		5	PDS5A	4	39851298	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	33792904	39851298	151302978	213	105811											
GABRA2	2555	broad.mit.edu	37	chr4	46312311	46312311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttgtttaagtatattgGtaagtcaagaaaaatcactc	6	5	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46312311	T	T	46312311	1	4	108	0	1	0	0	0	0	0	0	0	6221	1276	44	3		3	GABRA2	4	46312311	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	6461013	46312311	144841965	214	105812											
LRRC66	339977	broad.mit.edu	37	chr4	52861722	52861722	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggtgttgtccccgcactgtCctgggctctgcgaactgcca	12	15	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52861722	T	T	52861722	3	4	108	1	0	0	0	0	1	0	0	0	9105	855	30	4	1180	4	LRRC66	4	52861722	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	6549411	52861722	138292554	215	105813											
SPATA18	132671	broad.mit.edu	37	chr4	52944926	52944926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccatgtagcaaaaatggCattcagacacttcaagatcc	6	10	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52944926	A	A	52944926	3	1	108	1	0	0	0	0	1	0	0	0	15119	710	25	3	1076	3	SPATA18	4	52944926	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	83204	52944926	138209350	216	105814											
KIT	3815	broad.mit.edu	37	chr4	55593452	55593452	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatcgtagctggcatgatgTgcattattgtgatgattctg	11	5	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55593452	A	A	55593452	3	1	108	1	0	0	0	0	1	0	0	0	8400	1696	59	5	1647	5	KIT	4	55593452	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	2648526	55593452	135560824	217	105815											
KDR	3791	broad.mit.edu	37	chr4	55979649	55979649	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtttcttatgctgatgCtgaaaaaaagagttgactga	9	5	1	5			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55979649	A	A	55979649	5	1	108	1	0	0	0	0	0	0	1	0	8209	811	28	3	3368	3	KDR	4	55979649	Splice_Site	SNP	C	TCGA-44-2659-01A-01D-0969-08	386197	55979649	135174627	218	105816											
KIAA1211	57482	broad.mit.edu	37	chr4	57190447	57190447	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacaggtagagagcaggtcCattgctttgtaactgtagtt	12	6	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57190447	T	T	57190447	1	4	108	0	1	0	0	0	0	0	0	0	8285	609	21	4		4	KIAA1211	4	57190447	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1210798	57190447	133963829	219	105817											
LPHN3	23284	broad.mit.edu	37	chr4	62845321	62845321	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccttctggatgtgatcaCgtgggttggaattttgctgt	12	8	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62845321	T	T	62845321	3	4	108	1	0	0	0	0	1	0	0	0	9004	536	19	4	2700	4	LPHN3	4	62845321	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	5654874	62845321	128308955	220	105818											
EPHA5	2044	broad.mit.edu	37	chr4	66467292	66467292	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatttcctcataatcattgGaggaaatacatatacatgat	5	7	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66467292	T	T	66467292	1	4	108	0	1	0	0	0	0	0	0	0	5212	1189	41	3		3	EPHA5	4	66467292	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3621971	66467292	124686984	221	105819											
GNRHR	2798	broad.mit.edu	37	chr4	68619638	68619638	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgtgatagccagggagCggtccaggctgatcaccacc	13	14	1	2	rs104893842		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68619638	T	T	68619638	3	4	108	1	0	0	0	0	1	0	0	0	6613	768	27	4	582	4	GNRHR	4	68619638	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2152346	68619638	122534638	222	105820											
UGT2B28	54490	broad.mit.edu	37	chr4	70148193	70148193	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagttatgtaaagtaattatCttacatcatccactttttct	3	7	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70148193	A	A	70148193	1	1	108	0	1	0	0	0	0	0	0	0	17086	928	32	3		3	UGT2B28	4	70148193	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1528555	70148193	121006083	223	105821											
C4orf40	401137	broad.mit.edu	37	chr4	71021700	71021700	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagctttgcaaatttttcagCaatatggaaatgtaggtgca	9	5	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71021700	G	G	71021700	1	3	108	0	1	0	0	0	0	0	0	0	2292	725	25	4		4	C4orf40	4	71021700	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	873507	71021700	120132576	224	105822											
C4orf35	85438	broad.mit.edu	37	chr4	71200715	71200715	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagagataccactgagtcCagaagcaagacctgtgagag	11	10	0	5			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71200715	A	A	71200715	1	1	108	0	1	0	0	0	0	0	0	0	2288	609	21	2		2	C4orf35	4	71200715	5'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	179015	71200715	119953561	225	105823											
ALB	213	broad.mit.edu	37	chr4	74276149	74276149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacttttaaacatagttGgcatctttataacgatgtaa	5	5	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74276149	T	T	74276149	1	4	108	0	1	0	0	0	0	0	0	0	486	1363	47	2		2	ALB	4	74276149	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3075434	74276149	116878127	226	105824											
HSD17B13	345275	broad.mit.edu	37	chr4	88236551	88236551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaattctttgttcaagatgCcaagaaccaggactctccag	7	12	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88236551	A	A	88236551	1	1	108	0	1	0	0	0	0	0	0	0	7449	754	26	3		3	HSD17B13	4	88236551	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	13960402	88236551	102917725	227	105825											
DMP1	1758	broad.mit.edu	37	chr4	88584230	88584230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccagccaggagggcctcCagtctcacagcagctcagca	11	16	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88584230	A	A	88584230	3	1	108	1	0	0	0	0	1	0	0	0	4623	595	21	2	1318	2	DMP1	4	88584230	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	347679	88584230	102570046	228	105826											
GRID2	2895	broad.mit.edu	37	chr4	94693324	94693324	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagttttccacctcgtcaaTtgatttgacccctctggaca	6	13	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94693324	C	C	94693324	3	2	108	1	0	0	0	0	1	0	0	0	6838	1493	52	5	2761	5	GRID2	4	94693324	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	6109094	94693324	96460952	229	105827											
UNC5C	8633	broad.mit.edu	37	chr4	96106148	96106148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtctatataattttagacCtctttcttagagatgtctcc	5	8	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96106148	A	A	96106148	1	1	108	0	1	0	0	0	0	0	0	0	17119	696	24	2		2	UNC5C	4	96106148	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1412824	96106148	95048128	230	105828											
ADH6	130	broad.mit.edu	37	chr4	100140122	100140122	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgaaagaactgagggaaGtcaaaagggaattaaggaaa	13	2	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100140122	A	A	100140122	1	1	108	0	1	0	0	0	0	0	0	0	312	1044	36	4		4	ADH6	4	100140122	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4033974	100140122	91014154	231	105829											
ADH7	131	broad.mit.edu	37	chr4	100340162	100340162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctccaaagacacatcccttCcatgtgcgtccagtgaagag	8	14	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100340162	A	A	100340162	3	1	108	1	0	0	0	0	1	0	0	0	313	856	30	3	194	3	ADH7	4	100340162	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	200040	100340162	90814114	232	105830											
ENPEP	2028	broad.mit.edu	37	chr4	111469537	111469537	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttagccattagtagaaTaggatgctttctgagagaag	11	4	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111469537	C	C	111469537	1	2	108	0	1	0	0	0	0	0	0	0	5170	1421	49	5		5	ENPEP	4	111469537	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	11129375	111469537	79684739	233	105831											
KIAA1109	84162	broad.mit.edu	37	chr4	123095595	123095595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggaaaatcagtaaggctGtaagggtatcaggaagagag	15	3	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123095595	T	T	123095595	1	4	108	0	1	0	0	0	0	0	0	0	8278	1392	48	3		3	KIAA1109	4	123095595	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	11626058	123095595	68058681	234	105832											
SPATA5	166378	broad.mit.edu	37	chr4	123868550	123868550	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaactgcttcgaagggtaCcccatttgctcactgaggct	10	11	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123868550	T	T	123868550	3	4	108	1	0	0	0	0	1	0	0	0	15127	507	18	4	1655	4	SPATA5	4	123868550	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	772955	123868550	67285726	235	105833											
FAT4	79633	broad.mit.edu	37	chr4	126242381	126242381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagtttcagcaacagaCcttgggcctgaaaggaggaa	11	9	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126242381	A	A	126242381	3	1	108	1	0	0	0	0	1	0	0	0	5749	506	18	3	4817	3	FAT4	4	126242381	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2373831	126242381	64911895	236	105834											
LARP1B	55132	broad.mit.edu	37	chr4	128990541	128990541	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgatggacaggcttgccAtaagttgcacccttaggaac	10	11	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128990541	G	G	128990541	1	3	108	0	1	0	0	0	0	0	0	0	8701	232	8	5		5	LARP1B	4	128990541	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	2748160	128990541	62163735	237	105835											
PCDH10	57575	broad.mit.edu	37	chr4	134111245	134111245	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caataatgtgtaattctaaaCtccaaaagtcaacctctttt	3	9	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134111245	T	T	134111245	1	4	108	0	1	0	0	0	0	0	0	0	11601	580	20	4		4	PCDH10	4	134111245	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5120704	134111245	57043031	238	105836											
C4orf51	646603	broad.mit.edu	37	chr4	146617641	146617641	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgaatggaaatccctgtaAgtccacaggcttcatgtgat	10	8	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146617641	C	C	146617641	1	2	108	0	1	0	0	0	0	0	0	0	2300	87	3	5		5	C4orf51	4	146617641	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	12506396	146617641	44536635	239	105837											
ZNF827	152485	broad.mit.edu	37	chr4	146823920	146823920	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccagaacactgagctgcTgggcgtggtgggaaggcggg	20	8	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146823920	A	A	146823920	3	1	108	1	0	0	0	0	1	0	0	0	18309	1580	55	5	2790	5	ZNF827	4	146823920	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	206279	146823920	44330356	240	105838											
RNF175	285533	broad.mit.edu	37	chr4	154631639	154631639	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagaaaatgtgtgcgctccCagctaaatctcagttaagga	9	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154631639	G	G	154631639	3	3	108	1	0	0	0	0	1	0	0	0	13574	595	21	4	121	4	RNF175	4	154631639	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	7807719	154631639	36522637	241	105839											
GRIA2	2891	broad.mit.edu	37	chr4	158281395	158281395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtttgtatacggatatgaGgtaactcaccatcacaaaaa	8	8	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158281395	T	T	158281395	1	4	108	0	1	0	0	0	0	0	0	0	6834	1015	35	2		2	GRIA2	4	158281395	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3649756	158281395	32872881	242	105840											
TKTL2	84076	broad.mit.edu	37	chr4	164394546	164394546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcaacaaacggcaatcggGgggtagggtgtctctccaag	14	10	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164394546	T	T	164394546	3	4	108	1	0	0	0	0	1	0	0	0	16059	1232	43	2	1543	2	TKTL2	4	164394546	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	6113151	164394546	26759730	243	105841											
CBR4	84869	broad.mit.edu	37	chr4	169927726	169927726	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catttaacacctgcctgactCctatagggatgtgaatgtgt	9	9	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169927726	A	A	169927726	1	1	108	0	1	0	0	0	0	0	0	0	2736	870	30	3		3	CBR4	4	169927726	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5533180	169927726	21226550	244	105842											
NEK1	4750	broad.mit.edu	37	chr4	170428198	170428198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatcttacatgctcttccCacacttttttttctctctca	1	13	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170428198	A	A	170428198	3	1	108	1	0	0	0	0	1	0	0	0	10416	595	21	2	1919	2	NEK1	4	170428198	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	500472	170428198	20726078	245	105843											
ASB5	140458	broad.mit.edu	37	chr4	177142481	177142481	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttaacttaatgcccatcCaccccacacacctcacccca	2	19	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177142481	T	T	177142481	1	4	108	0	1	0	0	0	0	0	0	0	1030	609	21	4		4	ASB5	4	177142481	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	6714283	177142481	14011795	246	105844											
VEGFC	7424	broad.mit.edu	37	chr4	177648850	177648850	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagttagtttaaagcaaccAgaagtttaaacacatcatcc	5	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177648850	T	T	177648850	1	4	108	0	1	0	0	0	0	0	0	0	17279	203	7	5		5	VEGFC	4	177648850	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	506369	177648850	13505426	247	105845											
TRIML1	339976	broad.mit.edu	37	chr4	189068316	189068316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctttgaaaggtcagcaCgtcagagagcctgtgtgtaa	11	9	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189068316	A	A	189068316	3	1	108	1	0	0	0	0	1	0	0	0	16675	535	19	3	1219	3	TRIML1	4	189068316	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	11419466	189068316	2085960	248	105846											
CLPTM1L	81037	broad.mit.edu	37	chr5	1325738	1325738	+	Intron	DEL	C	-	-													agaaaccagtgctgcctccaCcacggaggctcccctgacag							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1325738	-	-	1325738	6	5	108	0	1	1	0	1	0	0	0	0	3587	522	18	0		0	CLPTM1L	5	1325738	Intron	DEL	C	TCGA-44-2659-01A-01D-0969-08		1325738	179589522	249	105847											
IRX4	50805	broad.mit.edu	37	chr5	1878835	1878835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagctcgcacgccggcgGctctgcttccagcgggtcga	13	16	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1878835	T	T	1878835	3	4	108	1	0	0	0	0	1	0	0	0	7916	1203	42	3	755	3	IRX4	5	1878835	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	553097	1878835	179036425	250	105848											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239326	5239326	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgtctgtggggtgtgtaaCgggaataactcagcctgcac	14	9	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5239326	T	T	5239326	2	4	108	1	0	0	0	0	0	0	0	1	261	535	19	4		4	ADAMTS16	5	5239326	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	3360491	5239326	175675934	251	105849											
CTNND2	1501	broad.mit.edu	37	chr5	11732420	11732420	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatgatcaatacaatcagaTgttgacactaaacaggtaca	6	8	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11732420	A	A	11732420	1	1	108	0	1	0	0	0	0	0	0	0	4054	1479	51	5		5	CTNND2	5	11732420	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	6493094	11732420	169182840	252	105850											
DNAH5	1767	broad.mit.edu	37	chr5	13820645	13820645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccacattgaaacacaaCaatgatggccggacacggtg	9	12	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13820645	A	A	13820645	1	1	108	0	1	0	0	0	0	0	0	0	4644	493	17	3		3	DNAH5	5	13820645	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2088225	13820645	167094615	253	105851											
PRDM9	56979	broad.mit.edu	37	chr5	23517995	23517995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcaccttttagtcaaaCctccttggatggccttaaga	6	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23517995	A	A	23517995	3	1	108	1	0	0	0	0	1	0	0	0	12569	507	18	3	321	3	PRDM9	5	23517995	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	9697350	23517995	157397265	254	105852											
PRDM9	56979	broad.mit.edu	37	chr5	23527675	23527675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagacaccagaggacacaCacaggggagaagccctatgt	11	12	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23527675	A	A	23527675	3	1	108	1	0	0	0	0	1	0	0	0	12569	477	17	3	2516	3	PRDM9	5	23527675	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	9680	23527675	157387585	255	105853											
CDH9	1007	broad.mit.edu	37	chr5	26903678	26903678	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataaatcccaggctttttttCcctttactgaaaagcaaacg	5	10	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26903678	T	T	26903678	1	4	108	0	1	0	0	0	0	0	0	0	3147	870	30	4		4	CDH9	5	26903678	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3376003	26903678	154011582	256	105854											
CDH6	1004	broad.mit.edu	37	chr5	31318142	31318142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcatacagcctgatctagGtgagtcgagttacatactga	11	8	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31318142	T	T	31318142	1	4	108	0	1	0	0	0	0	0	0	0	3144	1276	44	3		3	CDH6	5	31318142	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4414464	31318142	149597118	257	105855											
SLC45A2	51151	broad.mit.edu	37	chr5	33954552	33954552	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgcaaaggtagcggtagtGaggaggcatgttcaccagtg	16	6	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33954552	A	A	33954552	3	1	108	1	0	0	0	0	1	0	0	0	14755	1290	45	4	677	4	SLC45A2	5	33954552	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2636410	33954552	146960708	258	105856											
PRLR	5618	broad.mit.edu	37	chr5	35070163	35070163	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctattagtagttattaTatgcaaatataccatttaaa	3	5	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35070163	C	C	35070163	1	2	108	0	1	0	0	0	0	0	0	0	12637	1421	49	5		5	PRLR	5	35070163	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	1115611	35070163	145845097	259	105857											
SKP2	6502	broad.mit.edu	37	chr5	36152975	36152975	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgctgtcaggcatgggGgtctccgccctggagaaaga	15	10	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36152975	T	T	36152975	2	4	108	1	0	0	0	0	0	0	0	1	14475	1219	43	2		2	SKP2	5	36152975	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1082812	36152975	144762285	260	105858											
RANBP3L	202151	broad.mit.edu	37	chr5	36265657	36265657	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttaaatttttttaaatacAgaagagtgtcagattctaca	5	4	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36265657	T	T	36265657	1	4	108	0	1	0	0	0	0	0	0	0	13138	203	7	5		5	RANBP3L	5	36265657	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	112682	36265657	144649603	261	105859											
EGFLAM	133584	broad.mit.edu	37	chr5	38418193	38418194	+	Missense_Mutation	DNP	GG	TC	TC													atacagtaaaattactttccGgacacctctctatcttggtg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	38418194	TC	TC	38418193	3	4	108	1	0	0	0	0	1	0	0	0	5006	1116	39	1	1580	1	EGFLAM	5	38418193	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	2152536	38418193	142497067	262	105860											
LIFR	3977	broad.mit.edu	37	chr5	38496379	38496379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttctaggtcagcagcaaCaaggtatacgagaagaaggc	12	9	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38496379	A	A	38496379	1	1	108	0	1	0	0	0	0	0	0	0	8852	493	17	3		3	LIFR	5	38496379	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	78186	38496379	142418881	263	105861											
HEATR7B2	133558	broad.mit.edu	37	chr5	41033053	41033053	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctgttatgtgggactgGtgaagtctattcacttttta	10	5	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41033053	T	T	41033053	1	4	108	0	1	0	0	0	0	0	0	0	7102	1276	44	3		3	HEATR7B2	5	41033053	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2536674	41033053	139882207	264	105862											
C5orf51	285636	broad.mit.edu	37	chr5	41916970	41916970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaattaaatgaagattgtGttagtcatatttggcttttg	9	3	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41916970	T	T	41916970	1	4	108	0	1	0	0	0	0	0	0	0	2331	1392	48	3		3	C5orf51	5	41916970	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	883917	41916970	138998290	265	105863											
FGF10	2255	broad.mit.edu	37	chr5	44305247	44305247	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcataggtattgtatccAttttcctctatcctctcctt	5	11	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44305247	T	T	44305247	3	4	108	1	0	0	0	0	1	0	0	0	5896	214	8	5	153	5	FGF10	5	44305247	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	2388277	44305247	136610013	266	105864											
ITGA1	3672	broad.mit.edu	37	chr5	52201563	52201563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcctttaagggtccagGtggtatacctggaatctttc	11	8	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52201563	T	T	52201563	1	4	108	0	1	0	0	0	0	0	0	0	7942	1276	44	3		3	ITGA1	5	52201563	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	7896316	52201563	128713697	267	105865											
DHX29	54505	broad.mit.edu	37	chr5	54572988	54572988	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggggcagtgtgtgaaataTgtagaaaatttttcgctgtc	12	4	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54572988	C	C	54572988	2	2	108	1	0	0	0	0	0	0	0	1	4543	1451	51	5		5	DHX29	5	54572988	Silent	SNP	T	TCGA-44-2659-01A-01D-0969-08	2371425	54572988	126342272	268	105866											
HTR1A	3350	broad.mit.edu	37	chr5	63257347	63257347	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataattggccacgttctgcAgggagcgctccaaggcgatg	14	10	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63257347	T	T	63257347	3	4	108	1	0	0	0	0	1	0	0	0	7506	188	7	5	1071	5	HTR1A	5	63257347	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	8684359	63257347	117657913	269	105867											
MCCC2	64087	broad.mit.edu	37	chr5	70892219	70892219	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catagccaagtactgactcaGagtgttctctgttccatagt	8	10	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70892219	C	C	70892219	1	2	108	0	1	0	0	0	0	0	0	0	9468	957	33	4		4	MCCC2	5	70892219	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	7634872	70892219	110023041	270	105868											
ACOT12	134526	broad.mit.edu	37	chr5	80626558	80626558	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaagattacaattaattagGacatctgggtaaattaagag	8	4	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80626558	T	T	80626558	1	4	108	0	1	0	0	0	0	0	0	0	150	1189	41	3		3	ACOT12	5	80626558	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	9734339	80626558	100288702	271	105869											
MCTP1	79772	broad.mit.edu	37	chr5	94224666	94224666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctttcaggttgtgaaatatCctcaatgggctctgaaagac	9	8	4	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94224666	A	A	94224666	3	1	108	1	0	0	0	0	1	0	0	0	9493	854	30	3	1196	3	MCTP1	5	94224666	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	13598108	94224666	86690594	272	105870											
TSLP	85480	broad.mit.edu	37	chr5	110407688	110407688	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacttacgacttcactaacTgtgactttgagaagattaaa	6	7	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110407688	A	A	110407688	3	1	108	1	0	0	0	0	1	0	0	0	16753	1580	55	5	102	5	TSLP	5	110407688	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	16183022	110407688	70507572	273	105871											
CAMK4	814	broad.mit.edu	37	chr5	110814217	110814217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggacttggtaagtgtaacCaaaacaaaatgaaacaaaat	7	5	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110814217	A	A	110814217	1	1	108	0	1	0	0	0	0	0	0	0	2631	609	21	2		2	CAMK4	5	110814217	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	406529	110814217	70101043	274	105872											
CDO1	1036	broad.mit.edu	37	chr5	115149076	115149076	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttccacctctaagcaaCtttgaatgcagttttctaat	4	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115149076	A	A	115149076	1	1	108	0	1	0	0	0	0	0	0	0	3199	580	20	3		3	CDO1	5	115149076	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	4334859	115149076	65766184	275	105873											
AQPEP	206338	broad.mit.edu	37	chr5	115336941	115336941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctaaccagcaagtagGtagctttgctcctctttgtc	7	12	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115336941	T	T	115336941	1	4	108	0	1	0	0	0	0	0	0	0	836	1276	44	3		3	AQPEP	5	115336941	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	187865	115336941	65578319	276	105874											
HSD17B4	3295	broad.mit.edu	37	chr5	118850560	118850560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattttttttaaacccttttAtccaatttgcagagtttatt	4	6	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118850560	T	T	118850560	1	4	108	0	1	0	0	0	0	0	0	0	7453	464	16	5		5	HSD17B4	5	118850560	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	3513619	118850560	62064700	277	105875											
FAM170A	340069	broad.mit.edu	37	chr5	118968566	118968566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgcgtttcttcttcacGcaagctcatccacagtggta	7	14	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118968566	T	T	118968566	3	4	108	1	0	0	0	0	1	0	0	0	5534	1087	38	3	200	3	FAM170A	5	118968566	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	118006	118968566	61946694	278	105876											
LOX	4015	broad.mit.edu	37	chr5	121402325	121402326	+	3'UTR	INS	-	T	T													tccaaacaaaaattcttttgINSttgttttctgttctcttttt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121402326	T	T	121402325	6	5	108	0	1	1	1	0	0	0	0	0	8985	1392	48	0		0	LOX	5	121402325	3'UTR	INS	-	TCGA-44-2659-01A-01D-0969-08	2433759	121402325	59512935	279	105877											
FBN2	2201	broad.mit.edu	37	chr5	127686687	127686687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttgagccaacaggtcccCttcaggctgtctgaaaagga	11	10	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127686687	A	A	127686687	3	1	108	1	0	0	0	0	1	0	0	0	5760	680	24	2	6233	2	FBN2	5	127686687	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	6284362	127686687	53228573	280	105878											
ISOC1	51015	broad.mit.edu	37	chr5	128441222	128441222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtattatgttcactatttGcatggcactgatctgaacat	7	7	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128441222	T	T	128441222	1	4	108	0	1	0	0	0	0	0	0	0	7932	1334	46	3		3	ISOC1	5	128441222	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	754535	128441222	52474038	281	105879											
ACSL6	23305	broad.mit.edu	37	chr5	131323838	131323839	+	Missense_Mutation	DNP	CC	AA	AA													tgaggatgatcagcttgaggCctggagtctccttcctctcc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	131323839	AA	AA	131323838	3	1	108	1	0	0	0	0	1	0	0	0	181	739	26	3	1576	3	ACSL6	5	131323838	Missense_Mutation	DNP	CC	TCGA-44-2659-01A-01D-0969-08	2882616	131323838	49591422	282	105880											
RAD50	10111	broad.mit.edu	37	chr5	131945236	131945236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatccctgcactttggaaGgccgaggcgggtggatcact	14	10	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131945236	T	T	131945236	1	4	108	0	1	0	0	0	0	0	0	0	13092	1015	35	2		2	RAD50	5	131945236	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	621398	131945236	48970024	283	105881											
UBE2D2	7322	broad.mit.edu	37	chr5	138980095	138980095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaacaattatggtataGggaagaggcagtgtttaacc	12	4	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138980095	T	T	138980095	1	4	108	0	1	0	0	0	0	0	0	0	16975	1015	35	2		2	UBE2D2	5	138980095	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	7034859	138980095	41935165	284	105882											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744233	140744233	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttaacatcttggttgagaaCaaaatgaaaatttatggagt	8	3	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140744233	G	G	140744233	3	3	108	1	0	0	0	0	1	0	0	0	11651	477	17	4	338	4	PCDHGA5	5	140744233	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1764138	140744233	40171027	285	105883											
PCDHGA5	56110	broad.mit.edu	37	chr5	140745002	140745002	+	Frame_Shift_Del	DEL	T	-	-													ccggaactgtaatcgcgctgTttagcgtacatgatggtgat							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140745002	-	-	140745002	7	5	108	1	0	1	0	1	0	0	0	0	11651	1725	60	0	1107	0	PCDHGA5	5	140745002	Frame_Shift_Del	DEL	T	TCGA-44-2659-01A-01D-0969-08	769	140745002	40170258	286	105884											
PCDHGB6	56100	broad.mit.edu	37	chr5	140789266	140789266	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagtgacctagagcccctGgcggtgtcgtcatacgtgtc	14	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140789266	T	T	140789266	2	4	108	1	0	0	0	0	0	0	0	1	11661	1335	47	2		2	PCDHGB6	5	140789266	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	44264	140789266	40125994	287	105885											
GPR151	134391	broad.mit.edu	37	chr5	145895383	145895383	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaacacttttggagtaCgccgtagctcggataggtgc	11	11	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145895383	T	T	145895383	2	4	108	1	0	0	0	0	0	0	0	1	6722	523	19	4		4	GPR151	5	145895383	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	5106117	145895383	35019877	288	105886											
PPP2R2B	5521	broad.mit.edu	37	chr5	146070811	146070811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacagttttatctgtagtGggcaaccagattaagtcaga	9	7	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146070811	T	T	146070811	1	4	108	0	1	0	0	0	0	0	0	0	12486	1363	47	2		2	PPP2R2B	5	146070811	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	175428	146070811	34844449	289	105887											
JAKMIP2	9832	broad.mit.edu	37	chr5	146991680	146991680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacaaatatgtgaaggctGggttactgatggcagacgct	13	6	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146991680	T	T	146991680	1	4	108	0	1	0	0	0	0	0	0	0	8011	1363	47	2		2	JAKMIP2	5	146991680	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	920869	146991680	33923580	290	105888											
FAT2	2196	broad.mit.edu	37	chr5	150923125	150923125	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctcacttgctagtttattGatgatagtataatctatagt	6	5	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150923125	A	A	150923125	2	1	108	1	0	0	0	0	0	0	0	1	5747	1280	45	4		4	FAT2	5	150923125	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	3931445	150923125	29992135	291	105889											
FAT2	2196	broad.mit.edu	37	chr5	150948412	150948412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagtgccaagcagaggaGgagagaatcccttctagagg	15	7	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150948412	T	T	150948412	2	4	108	1	0	0	0	0	0	0	0	1	5747	987	35	2		2	FAT2	5	150948412	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	25287	150948412	29966848	292	105890											
GALNT10	55568	broad.mit.edu	37	chr5	153792356	153792356	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggttaatccagctaatGtctcccacttggtttcccct	7	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153792356	A	A	153792356	1	1	108	0	1	0	0	0	0	0	0	0	6270	1392	48	4		4	GALNT10	5	153792356	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2843944	153792356	27122904	293	105891											
HAND1	9421	broad.mit.edu	37	chr5	153857373	153857373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggcggtggcggctgcagCggccgcgggcggcggcccgc	21	14	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153857373	A	A	153857373	3	1	108	1	0	0	0	0	1	0	0	0	7015	768	27	3	459	3	HAND1	5	153857373	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	65017	153857373	27057887	294	105892											
TIMD4	91937	broad.mit.edu	37	chr5	156376676	156376676	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacacctttggatgtcagcAggacagtgtcagcagaagta	12	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156376676	C	C	156376676	3	2	108	1	0	0	0	0	1	0	0	0	16026	188	7	5	414	5	TIMD4	5	156376676	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	2519303	156376676	24538584	295	105893											
HAVCR2	84868	broad.mit.edu	37	chr5	156533775	156533775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcctttgcggaaatccCcatttagccagtatctggat	7	12	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156533775	A	A	156533775	3	1	108	1	0	0	0	0	1	0	0	0	7040	623	22	2	672	2	HAVCR2	5	156533775	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	157099	156533775	24381485	296	105894											
ITK	3702	broad.mit.edu	37	chr5	156638260	156638260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtcaactatctccatgCacgctgctcaccttgaactc	6	15	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156638260	A	A	156638260	1	1	108	0	1	0	0	0	0	0	0	0	7979	725	25	3		3	ITK	5	156638260	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	104485	156638260	24277000	297	105895											
ITK	3702	broad.mit.edu	37	chr5	156673057	156673057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgatctgggcttcaggcCagctgtttcctttatcaaat	8	11	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156673057	A	A	156673057	1	1	108	0	1	0	0	0	0	0	0	0	7979	609	21	2		2	ITK	5	156673057	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	34797	156673057	24242203	298	105896											
CYFIP2	26999	broad.mit.edu	37	chr5	156731349	156731349	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacaagatgtacctgactcCcagtgagaaacatatgctcc	8	11	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156731349	G	G	156731349	3	3	108	1	0	0	0	0	1	0	0	0	4171	623	22	4	796	4	CYFIP2	5	156731349	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	58292	156731349	24183911	299	105897											
CCNJL	79616	broad.mit.edu	37	chr5	159680488	159680488	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcagctgcaatggccataTgcatgctaagggatgcaggg	14	9	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159680488	C	C	159680488	3	2	108	1	0	0	0	0	1	0	0	0	2959	1464	51	5	106	5	CCNJL	5	159680488	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	2949139	159680488	21234772	300	105898											
SLIT3	6586	broad.mit.edu	37	chr5	168093468	168093468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcaggggcttaggaacaCgcgaggcagccgcactctaa	15	12	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168093468	A	A	168093468	2	1	108	1	0	0	0	0	0	0	0	1	14855	523	19	3		3	SLIT3	5	168093468	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	8412980	168093468	12821792	301	105899											
SLIT3	6586	broad.mit.edu	37	chr5	168201305	168201305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcagcttgttgtcataCagggagagcaagttgaggtt	14	6	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168201305	A	A	168201305	2	1	108	1	0	0	0	0	0	0	0	1	14855	465	17	3		3	SLIT3	5	168201305	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	107837	168201305	12713955	302	105900											
LCP2	3937	broad.mit.edu	37	chr5	169697832	169697832	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatccgcgtcatcttccacGggtgcctcttcctcctcatt	6	16	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169697832	T	T	169697832	2	4	108	1	0	0	0	0	0	0	0	1	8764	1103	39	1		1	LCP2	5	169697832	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1496527	169697832	11217428	303	105901											
STC2	8614	broad.mit.edu	37	chr5	172744804	172744804	+	3'UTR	DEL	A	-	-													ttggaatgtccatagataagAaaatggacggcgtggaggaa							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	172744804	-	-	172744804	6	5	108	0	1	1	0	1	0	0	0	0	15394	261	9	0		0	STC2	5	172744804	3'UTR	DEL	A	TCGA-44-2659-01A-01D-0969-08	3046972	172744804	8170456	304	105902											
UNC5A	90249	broad.mit.edu	37	chr5	176301209	176301209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagctcccacgccaagggCtgctggggcagggatgccct	14	16	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176301209	A	A	176301209	1	1	108	0	1	0	0	0	0	0	0	0	17117	812	28	3		3	UNC5A	5	176301209	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3556405	176301209	4614051	305	105903											
NSD1	64324	broad.mit.edu	37	chr5	176686968	176686968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgtttttcttttgcttGtccctgattttcctgcttta	5	8	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176686968	T	T	176686968	1	4	108	0	1	0	0	0	0	0	0	0	10764	1392	48	3		3	NSD1	5	176686968	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	385759	176686968	4228292	306	105904											
MAML1	9794	broad.mit.edu	37	chr5	179200766	179200766	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccacctgtggaaggctttCtgccccatggcccccggggc	12	16	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179200766	G	G	179200766	1	3	108	0	1	0	0	0	0	0	0	0	9297	928	32	4		4	MAML1	5	179200766	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2513798	179200766	1714494	307	105905											
EXOC2	55770	broad.mit.edu	37	chr6	549257	549257	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtgacgttctagatagCagcaattacttaggactatc	10	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	549257	G	G	549257	3	3	108	1	0	0	0	0	1	0	0	0	5344	710	25	4	646	4	EXOC2	6	549257	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08		549257	170565810	308	105906											
EXOC2	55770	broad.mit.edu	37	chr6	553806	553806	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attagatttgcgaaattgttGttacacagttttaaaatggt	8	3	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	553806	A	A	553806	1	1	108	0	1	0	0	0	0	0	0	0	5344	1392	48	4		4	EXOC2	6	553806	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4549	553806	170561261	309	105907											
HUS1B	135458	broad.mit.edu	37	chr6	656317	656317	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccacagccgactggggagGgtttccaagatttttaaaat	10	9	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	656317	A	A	656317	3	1	108	1	0	0	0	0	1	0	0	0	7530	1232	43	4	212	4	HUS1B	6	656317	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	102511	656317	170458750	310	105908											
FAM50B	26240	broad.mit.edu	37	chr6	3849964	3849964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaggcgcagagctgagCattccccgccgttgcgtggg	17	11	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3849964	A	A	3849964	1	1	108	0	1	0	0	0	0	0	0	0	5629	725	25	3		3	FAM50B	6	3849964	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3193647	3849964	167265103	311	105909											
F13A1	2162	broad.mit.edu	37	chr6	6267178	6267178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagaaacatacaaatcaGgcaagtctgcaaattacttt	6	7	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6267178	T	T	6267178	1	4	108	0	1	0	0	0	0	0	0	0	5383	1015	35	2		2	F13A1	6	6267178	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2417214	6267178	164847889	312	105910											
TBC1D7	51256	broad.mit.edu	37	chr6	13321220	13321220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcagcctgaggtgtggCatcactaacaaagcgaacga	11	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13321220	A	A	13321220	3	1	108	1	0	0	0	0	1	0	0	0	15746	710	25	3	600	3	TBC1D7	6	13321220	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	7054042	13321220	157793847	313	105911											
E2F3	1871	broad.mit.edu	37	chr6	20482890	20482890	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaacacttggctaacaagcAatgtgacctcctatgtcaag	7	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20482890	T	T	20482890	1	4	108	0	1	0	0	0	0	0	0	0	4908	145	5	5		5	E2F3	6	20482890	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	7161670	20482890	150632177	314	105912											
SCGN	10590	broad.mit.edu	37	chr6	25689863	25689863	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaccctaaacttacatgatGaataccaatcccatctgtgt	5	11	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25689863	T	T	25689863	1	4	108	0	1	0	0	0	0	0	0	0	14016	1305	45	3		3	SCGN	6	25689863	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5206973	25689863	145425204	315	105913											
HIST1H4D	8360	broad.mit.edu	37	chr6	26189412	26189412	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacctcatgagaaggggcgGgaaccacagtcagttcccgc	12	12	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26189412	T	T	26189412	1	4	108	0	1	0	0	0	0	0	0	0	7235	1247	43	2		2	HIST1H4D	6	26189412	5'Flank	SNP	G	TCGA-44-2659-01A-01D-0969-08	499549	26189412	144925655	316	105914											
BAT5	7920	broad.mit.edu	37	chr6	31671050	31671050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaggacgcagctcagcagCttcgccatggccccggctcg	12	17	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31671050	A	A	31671050	3	1	108	1	0	0	0	0	1	0	0	0	1329	796	28	3	1908	3	BAT5	6	31671050	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	5481638	31671050	139444017	317	105915											
HSPA1L	3305	broad.mit.edu	37	chr6	31779674	31779674	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcgatgatctccaccttgcCgtgctggaacacccccacac	9	17	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31779674	G	G	31779674	3	3	108	1	0	0	0	0	1	0	0	0	7479	652	23	4	1853	4	HSPA1L	6	31779674	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	108624	31779674	139335393	318	105916											
C6orf10	10665	broad.mit.edu	37	chr6	32323402	32323402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaataggaagcaaatttttGttaagaagcaagataatact	7	4	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32323402	T	T	32323402	1	4	108	0	1	0	0	0	0	0	0	0	2340	1392	48	3		3	C6orf10	6	32323402	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	543728	32323402	138791665	319	105917											
RXRB	6257	broad.mit.edu	37	chr6	33164224	33164224	+	Frame_Shift_Del	DEL	C	-	-													cactcacgctgctgccgctaCccccggttcccccaggaccc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33164224	-	-	33164224	7	5	108	1	0	1	0	1	0	0	0	0	13875	507	18	0	645	0	RXRB	6	33164224	Frame_Shift_Del	DEL	C	TCGA-44-2659-01A-01D-0969-08	840822	33164224	137950843	320	105918											
RPS18	6222	broad.mit.edu	37	chr6	33244073	33244073	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggtctcatctccctgcctAcctcgactcagcattcctcc	7	18	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33244073	T	T	33244073	1	4	108	0	1	0	0	0	0	0	0	0	13739	406	14	5		5	RPS18	6	33244073	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	79849	33244073	137870994	321	105919											
DNAH8	1769	broad.mit.edu	37	chr6	38791356	38791356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaatttttggctaacaacCcctctctgactgaaatcaga	7	10	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38791356	A	A	38791356	3	1	108	1	0	0	0	0	1	0	0	0	4647	623	22	2	3182	2	DNAH8	6	38791356	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	5547283	38791356	132323711	322	105920											
GPR116	221395	broad.mit.edu	37	chr6	46826786	46826786	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttccagaagacacacttcgTttcgccgcctgaagggctat	10	12	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46826786	C	C	46826786	3	2	108	1	0	0	0	0	1	0	0	0	6698	1725	60	5	1206	5	GPR116	6	46826786	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	8035430	46826786	124288281	323	105921											
PKHD1	5314	broad.mit.edu	37	chr6	51701097	51701097	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacatataagctttaggaCtgatacctgcctgtttatta	7	8	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51701097	T	T	51701097	1	4	108	0	1	0	0	0	0	0	0	0	12066	580	20	4		4	PKHD1	6	51701097	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	4874311	51701097	119413970	324	105922											
IL17F	112744	broad.mit.edu	37	chr6	52102076	52102076	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaggcagttctgcagggCtgtggcacaggttctggagc	18	8	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52102076	A	A	52102076	1	1	108	0	1	0	0	0	0	0	0	0	7708	812	28	3		3	IL17F	6	52102076	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	400979	52102076	119012991	325	105923											
GSTA1	2938	broad.mit.edu	37	chr6	52659104	52659104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggtcaaataccttttgCcttagattttataggtttat	6	5	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52659104	A	A	52659104	1	1	108	0	1	0	0	0	0	0	0	0	6896	754	26	3		3	GSTA1	6	52659104	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	557028	52659104	118455963	326	105924											
GSTA5	221357	broad.mit.edu	37	chr6	52702270	52702270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactaaatatcaccccccaCacacataggtattcctggct	5	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52702270	A	A	52702270	1	1	108	0	1	0	0	0	0	0	0	0	6900	493	17	3		3	GSTA5	6	52702270	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	43166	52702270	118412797	327	105925											
TINAG	27283	broad.mit.edu	37	chr6	54191519	54191519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctattaaatttcagaaatAtaaaggaaaatgtatttata	5	2	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54191519	G	G	54191519	1	3	108	0	1	0	0	0	0	0	0	0	16044	464	16	5		5	TINAG	6	54191519	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	1489249	54191519	116923548	328	105926											
COL21A1	81578	broad.mit.edu	37	chr6	55926527	55926527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgtgcaagctacagtaCtgtaatgtggcatccacctt	8	9	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55926527	A	A	55926527	1	1	108	0	1	0	0	0	0	0	0	0	3712	580	20	3		3	COL21A1	6	55926527	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1735008	55926527	115188540	329	105927											
DST	667	broad.mit.edu	37	chr6	56510624	56510624	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagaacacaaaggccccctCcccacttgatattcatggca	6	15	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56510624	A	A	56510624	1	1	108	0	1	0	0	0	0	0	0	0	4823	870	30	3		3	DST	6	56510624	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	584097	56510624	114604443	330	105928											
DST	667	broad.mit.edu	37	chr6	56516040	56516041	+	Missense_Mutation	DNP	GG	AT	AT													tattcatatctatcaggtccGgcctaggaaaaaattcactg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	56516041	AT	AT	56516040	3	1	108	1	0	0	0	0	1	0	0	0	4823	1131	39	4		4	DST	6	56516040	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	5416	56516040	114599027	331	105929											
BAI3	577	broad.mit.edu	37	chr6	69728485	69728485	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagtataatattcattattCatatgtttaactgcatgtga	5	5	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69728485	A	A	69728485	1	1	108	0	1	0	0	0	0	0	0	0	1305	841	29	3		3	BAI3	6	69728485	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	13212445	69728485	101386582	332	105930											
EEF1A1	1915	broad.mit.edu	37	chr6	74229134	74229136	+	In_Frame_Del	DEL	TGC	-	-													aatgatagtcacatagtactTgctggtctcaaatttccaca							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74229136	-	-	74229134	7	5	108	1	0	1	0	1	0	0	0	0	4963	1821	63	0	1162	0	EEF1A1	6	74229134	In_Frame_Del	DEL	TGC	TCGA-44-2659-01A-01D-0969-08	4500649	74229134	96885933	333	105931											
KIAA0776	23376	broad.mit.edu	37	chr6	96996020	96996020	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttatttatttatttgccAttgctcatgtccgatatagg	6	6	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96996020	T	T	96996020	1	4	108	0	1	0	0	0	0	0	0	0	8263	232	8	5		5	KIAA0776	6	96996020	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	22766886	96996020	74119047	334	105932											
SFRS18	25957	broad.mit.edu	37	chr6	99862417	99862417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttccacatatccaaccCcgccctttcaaattcaattt	1	16	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99862417	A	A	99862417	1	1	108	0	1	0	0	0	0	0	0	0	14287	638	22	2		2	SFRS18	6	99862417	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2866397	99862417	71252650	335	105933											
FIG4	9896	broad.mit.edu	37	chr6	110037964	110037964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatctgcttatgcacttaGcactgctcagttttatttag	7	9	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110037964	T	T	110037964	1	4	108	0	1	0	0	0	0	0	0	0	5945	986	34	3		3	FIG4	6	110037964	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	10175547	110037964	61077103	336	105934											
RSPH4A	345895	broad.mit.edu	37	chr6	116938031	116938031	+	Missense_Mutation	SNP	C	A	A													gggaccagaaacatcatcacCtgctcctgtctctccgcggg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116938031	A	A	116938031	3	1	108	1	0	0	0	0	1	0	0	0	13817	681	24	2	247	2	RSPH4A	6	116938031	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	6900067	116938031	54177036	337	105935	461	2									
RSPH4A	345895	broad.mit.edu	37	chr6	116938033	116938033	+	Missense_Mutation	SNP	G	T	T													gaccagaaacatcatcacctGctcctgtctctccgcgggag							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116938033	T	T	116938033	3	4	108	1	0	0	0	0	1	0	0	0	13817	1319	46	3	249	3	RSPH4A	6	116938033	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2	116938033	54177034	338	105936	461	2									
LAMA2	3908	broad.mit.edu	37	chr6	129635942	129635943	+	Missense_Mutation	DNP	GG	TT	TT													aaaaggactgatccggacgtGggtgagtagggaactgctga							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	129635943	TT	TT	129635942	3	4	108	1	0	0	0	0	1	0	0	0	8678	1362	47	2	3648	2	LAMA2	6	129635942	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	12697909	129635942	41479125	339	105937											
LAMA2	3908	broad.mit.edu	37	chr6	129674483	129674483	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagcactggcatgcacgCgagggctgggagtgtgtttg	17	8	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129674483	T	T	129674483	2	4	108	1	0	0	0	0	0	0	0	1	8678	755	27	4		4	LAMA2	6	129674483	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	38541	129674483	41440584	340	105938											
MED23	9439	broad.mit.edu	37	chr6	131912668	131912668	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaatccaatatggctcCtttaaaatcggaggaaagct	8	8	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131912668	A	A	131912668	5	1	108	1	0	0	0	0	0	0	1	0	9534	695	24	2	658	2	MED23	6	131912668	Splice_Site	SNP	C	TCGA-44-2659-01A-01D-0969-08	2238185	131912668	39202399	341	105939											
MOXD1	26002	broad.mit.edu	37	chr6	132649636	132649636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgatagcactcgtggCcggactccagaacgctgtcg	15	11	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132649636	T	T	132649636	3	4	108	1	0	0	0	0	1	0	0	0	9814	739	26	4	1112	4	MOXD1	6	132649636	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	736968	132649636	38465431	342	105940											
UTRN	7402	broad.mit.edu	37	chr6	144724345	144724345	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgagactttcaaaaacttcGatggttcagatgccgcattc	8	10	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144724345	T	T	144724345	1	4	108	0	1	0	0	0	0	0	0	0	17230	1073	37	3		3	UTRN	6	144724345	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	12074709	144724345	26390722	343	105941											
SYNE1	23345	broad.mit.edu	37	chr6	152532561	152532561	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatatatgccctccaatcTgctcattaaaaagaaaatga	6	8	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152532561	A	A	152532561	1	1	108	0	1	0	0	0	0	0	0	0	15564	1595	55	5		5	SYNE1	6	152532561	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	7808216	152532561	18582506	344	105942											
OPRM1	4988	broad.mit.edu	37	chr6	154411267	154411267	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggatcctctcttcagcCattggtcttcctgtaatgtt	7	11	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154411267	A	A	154411267	2	1	108	1	0	0	0	0	0	0	0	1	10981	581	21	2		2	OPRM1	6	154411267	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	1878706	154411267	16703800	345	105943											
SUN1	23353	broad.mit.edu	37	chr7	912908	912908	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcggattttttctaactgGggccatcctgagtatacctg	9	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	912908	A	A	912908	4	1	108	1	0	0	0	0	0	1	0	0	15509	1241	43	4	2555	4	SUN1	7	912908	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08		912908	158225755	346	105944											
MICALL2	79778	broad.mit.edu	37	chr7	1478029	1478029	+	Intron	DEL	C	-	-													agcctctgggacctgggccaCcaggcccaacgtgaccagga							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1478029	-	-	1478029	6	5	108	0	1	1	0	1	0	0	0	0	9667	522	18	0		0	MICALL2	7	1478029	Intron	DEL	C	TCGA-44-2659-01A-01D-0969-08	565121	1478029	157660634	347	105945											
FSCN1	6624	broad.mit.edu	37	chr7	5644853	5644853	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accctccgctgcccagggtaGgggtggggagccaggctttg	17	12	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5644853	C	C	5644853	1	2	108	0	1	0	0	0	0	0	0	0	6127	1015	35	4		4	FSCN1	7	5644853	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4166824	5644853	153493810	348	105946											
PHF14	9678	broad.mit.edu	37	chr7	11068363	11068363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggggtttgcattagctGtgatgcagggatgtgcagag	16	5	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11068363	T	T	11068363	3	4	108	1	0	0	0	0	1	0	0	0	11920	1377	48	3	1399	3	PHF14	7	11068363	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	5423510	11068363	148070300	349	105947											
THSD7A	221981	broad.mit.edu	37	chr7	11486977	11486977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcaggcctgggtaagggCtggcacagggcctgcatact	16	11	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11486977	A	A	11486977	3	1	108	1	0	0	0	0	1	0	0	0	16002	797	28	3	2357	3	THSD7A	7	11486977	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	418614	11486977	147651686	350	105948											
TMEM106B	54664	broad.mit.edu	37	chr7	12270059	12270059	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagcagaggaaatgagttaTatgtagtaagttctgattta	10	2	1	3	rs142177964		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12270059	C	C	12270059	2	2	108	1	0	0	0	0	0	0	0	1	16144	1413	49	5		5	TMEM106B	7	12270059	Silent	SNP	T	TCGA-44-2659-01A-01D-0969-08	783082	12270059	146868604	351	105949											
HDAC9	9734	broad.mit.edu	37	chr7	18688221	18688221	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacctttgcctcagagcaCgttggctcagctggtcattc	10	13	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18688221	G	G	18688221	3	3	108	1	0	0	0	0	1	0	0	0	7081	536	19	4	1420	4	HDAC9	7	18688221	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	6418162	18688221	140450442	352	105950											
CBX3	11335	broad.mit.edu	37	chr7	26251418	26251418	+	Intron	DEL	T	-	-													catttgaaagtaagagtagcTttttttttttaatttgtgaa							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26251418	-	-	26251418	6	5	108	0	1	1	0	1	0	0	0	0	2745	1624	56	0		0	CBX3	7	26251418	Intron	DEL	T	TCGA-44-2659-01A-01D-0969-08	7563197	26251418	132887245	353	105951											
SKAP2	8935	broad.mit.edu	37	chr7	27022921	27022921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctatgttcttctctgcaCgtctgcacatagaaggcata	7	11	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27022921	A	A	27022921	1	1	108	0	1	0	0	0	0	0	0	0	14469	551	19	3		3	SKAP2	7	27022921	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	771503	27022921	132115742	354	105952											
CCDC129	223075	broad.mit.edu	37	chr7	31611609	31611609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattatgggattattagagaCtaagaggaaatgcaaatgtt	10	3	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31611609	A	A	31611609	1	1	108	0	1	0	0	0	0	0	0	0	2790	580	20	3		3	CCDC129	7	31611609	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	4588688	31611609	127527054	355	105953											
PDE1C	5137	broad.mit.edu	37	chr7	31917664	31917664	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacattctgaaaagccaaaaGggaaaaatgcaacatgatat	7	6	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31917664	A	A	31917664	1	1	108	0	1	0	0	0	0	0	0	0	11729	1015	35	4		4	PDE1C	7	31917664	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	306055	31917664	127220999	356	105954											
AOAH	313	broad.mit.edu	37	chr7	36589248	36589248	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttccaatcagtttctgtAgtgtttaatcctggaactct	6	9	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36589248	G	G	36589248	1	3	108	0	1	0	0	0	0	0	0	0	728	435	15	5		5	AOAH	7	36589248	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	4671584	36589248	122549415	357	105955											
ELMO1	9844	broad.mit.edu	37	chr7	37264644	37264644	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaacttgctatctgaaaatCcaagtgggacacaattgact	7	8	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37264644	A	A	37264644	1	1	108	0	1	0	0	0	0	0	0	0	5107	870	30	3		3	ELMO1	7	37264644	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	675396	37264644	121874019	358	105956											
ELMO1	9844	broad.mit.edu	37	chr7	37298871	37298872	+	Missense_Mutation	DNP	GG	TC	TC													aaacgtgacatcccgggagaGgctggccaagtccttcaggg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	37298872	TC	TC	37298871	3	4	108	1	0	0	0	0	1	0	0	0	5107	1000	35	2	1923	2	ELMO1	7	37298871	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	34227	37298871	121839792	359	105957											
TXNDC3	51314	broad.mit.edu	37	chr7	37890142	37890142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccaagaaatcctgcagtGcctttgccctggccatggct	10	13	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37890142	T	T	37890142	1	4	108	0	1	0	0	0	0	0	0	0	16924	1334	46	3		3	TXNDC3	7	37890142	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	591271	37890142	121248521	360	105958											
TXNDC3	51314	broad.mit.edu	37	chr7	37928069	37928069	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtgaatgtatacattttcTccaaattttgtgaacattta	5	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37928069	A	A	37928069	1	1	108	0	1	0	0	0	0	0	0	0	16924	1566	54	5		5	TXNDC3	7	37928069	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	37927	37928069	121210594	361	105959											
SFRP4	6424	broad.mit.edu	37	chr7	37951987	37951987	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactagggatggtgtattcaTgccaacttctgagcctctct	9	10	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37951987	C	C	37951987	1	2	108	0	1	0	0	0	0	0	0	0	14276	1479	51	5		5	SFRP4	7	37951987	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	23918	37951987	121186676	362	105960											
POU6F2	11281	broad.mit.edu	37	chr7	39125675	39125675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtactaccatgttgtcCggaagagcaatccaaccccc	7	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39125675	A	A	39125675	1	1	108	0	1	0	0	0	0	0	0	0	12381	667	23	1		1	POU6F2	7	39125675	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1173688	39125675	120012988	363	105961											
CAMK2B	816	broad.mit.edu	37	chr7	44266270	44266270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaacagacgagacgtgaaCacaaggcaggcacggggggc	17	10	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44266270	A	A	44266270	1	1	108	0	1	0	0	0	0	0	0	0	2626	493	17	3		3	CAMK2B	7	44266270	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5140595	44266270	114872393	364	105962											
ADCY1	107	broad.mit.edu	37	chr7	45699928	45699928	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggggagagttgtccccactGacaccgtcctgagccttgtc	12	13	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45699928	T	T	45699928	1	4	108	0	1	0	0	0	0	0	0	0	292	1305	45	3		3	ADCY1	7	45699928	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1433658	45699928	113438735	365	105963											
SUN3	256979	broad.mit.edu	37	chr7	48045447	48045448	+	Intron	INS	-	C	C													ttatctaaattgattaatttINScccccccccaagttaccaga					rs142156983	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48045448	C	C	48045447	6	5	108	0	1	1	1	0	0	0	0	0	15511	1798	62	0		0	SUN3	7	48045447	Intron	INS	-	TCGA-44-2659-01A-01D-0969-08	2345519	48045447	111093216	366	105964											
ABCA13	154664	broad.mit.edu	37	chr7	48416095	48416095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggcatgacatttggctGggtttgctggatgattcttt	15	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48416095	T	T	48416095	3	4	108	1	0	0	0	0	1	0	0	0	31	1357	47	2	11228	2	ABCA13	7	48416095	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	370648	48416095	110722568	367	105965											
GBAS	2631	broad.mit.edu	37	chr7	56065274	56065274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttatcaggttgtggggggaAgggagatagtcaatttttct	15	3	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56065274	T	T	56065274	1	4	108	0	1	0	0	0	0	0	0	0	6331	87	3	5		5	GBAS	7	56065274	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	7649179	56065274	103073389	368	105966											
ZNF680	340252	broad.mit.edu	37	chr7	64004155	64004155	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttgctccaaacaggttatCaggtgaggcttagagacagc	11	10	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64004155	G	G	64004155	2	3	108	1	0	0	0	0	0	0	0	1	18214	813	29	4		4	ZNF680	7	64004155	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	7938881	64004155	95134508	369	105967											
ASL	435	broad.mit.edu	37	chr7	65557743	65557744	+	Intron	DEL	CT	-	-													gcgccctggcccacctcttcCtctctccccagccccctgtt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65557744	-	-	65557743	6	5	108	0	1	1	0	1	0	0	0	0	1048	696	24	0		0	ASL	7	65557743	Intron	DEL	CT	TCGA-44-2659-01A-01D-0969-08	1553588	65557743	93580920	370	105968											
AUTS2	26053	broad.mit.edu	37	chr7	70231404	70231404	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaccgggctgggcagcgGggccaccagagatcgaatgg	19	10	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70231404	C	C	70231404	1	2	108	0	1	0	0	0	0	0	0	0	1230	1247	43	4		4	AUTS2	7	70231404	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4673661	70231404	88907259	371	105969											
HGF	3082	broad.mit.edu	37	chr7	81335640	81335640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagatctgatccttcagGgccatataccagctgggaaa	9	11	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81335640	T	T	81335640	3	4	108	1	0	0	0	0	1	0	0	0	7152	1232	43	2	482	2	HGF	7	81335640	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	11104236	81335640	77803023	372	105970											
SEMA3D	223117	broad.mit.edu	37	chr7	84669987	84669987	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcattttgttgaacatAcctggttgtagtaaagactc	8	6	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84669987	T	T	84669987	5	4	108	1	0	0	0	0	0	0	1	0	14140	405	14	5	1321	5	SEMA3D	7	84669987	Splice_Site	SNP	A	TCGA-44-2659-01A-01D-0969-08	3334347	84669987	74468676	373	105971											
ABCB4	5244	broad.mit.edu	37	chr7	87083942	87083942	+	Intron	DEL	G	-	-													taaaataaaacatgttaaaaGatcaaactattaataggcat							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87083942	-	-	87083942	6	5	108	0	1	1	0	1	0	0	0	0	43	957	33	0		0	ABCB4	7	87083942	Intron	DEL	G	TCGA-44-2659-01A-01D-0969-08	2413955	87083942	72054721	374	105972											
ABCB1	5243	broad.mit.edu	37	chr7	87165936	87165936	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagggcagcgatggggtcaGttttgtttatacttataccc	12	7	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87165936	C	C	87165936	1	2	108	0	1	0	0	0	0	0	0	0	40	1044	36	4		4	ABCB1	7	87165936	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	81994	87165936	71972727	375	105973											
PILRA	29992	broad.mit.edu	37	chr7	99971855	99971855	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtccttctacagcacaAggccgccttccattcacaag	8	15	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99971855	T	T	99971855	3	4	108	1	0	0	0	0	1	0	0	0	12020	63	3	5	259	5	PILRA	7	99971855	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	12805919	99971855	59166808	376	105974											
MUC17	140453	broad.mit.edu	37	chr7	100663463	100663463	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgctgaccttggtccTctcgctcttgcccccacaag	9	16	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100663463	A	A	100663463	3	1	108	1	0	0	0	0	1	0	0	0	10068	1551	54	5	49	5	MUC17	7	100663463	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	691608	100663463	58475200	377	105975											
AP1S1	1174	broad.mit.edu	37	chr7	100802303	100802304	+	Intron	INS	-	G	G													ggaagtggctccagttgcccINSctccatgctcaacttagcct							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100802304	G	G	100802303	6	5	108	0	1	1	1	0	0	0	0	0	738	638	22	0		0	AP1S1	7	100802303	Intron	INS	-	TCGA-44-2659-01A-01D-0969-08	138840	100802303	58336360	378	105976											
ZNHIT1	10467	broad.mit.edu	37	chr7	100866097	100866097	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcgggggatgggactgagagGagggcgggagagtccgccca	22	8	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100866097	C	C	100866097	1	2	108	0	1	0	0	0	0	0	0	0	18335	1189	41	4		4	ZNHIT1	7	100866097	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	63794	100866097	58272566	379	105977											
NRCAM	4897	broad.mit.edu	37	chr7	107830179	107830179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagttctaagtcaaagggagGatttgggacatctgtagacc	12	7	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107830179	T	T	107830179	3	4	108	1	0	0	0	0	1	0	0	0	10739	1174	41	3	2055	3	NRCAM	7	107830179	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	6964082	107830179	51308484	380	105978											
PPP1R3A	5506	broad.mit.edu	37	chr7	113519512	113519512	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacttattttagggttaccCatcttcctttcttggtcatg	6	10	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113519512	G	G	113519512	3	3	108	1	0	0	0	0	1	0	0	0	12472	594	21	4	1737	4	PPP1R3A	7	113519512	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	5689333	113519512	45619151	381	105979											
C7orf58	79974	broad.mit.edu	37	chr7	120906591	120906591	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaactactcactgtacatCaaatgtgctcaaaaggttag	6	10	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120906591	G	G	120906591	1	3	108	0	1	0	0	0	0	0	0	0	2430	841	29	4		4	C7orf58	7	120906591	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	7387079	120906591	38232072	382	105980											
PTPRZ1	5803	broad.mit.edu	37	chr7	121650791	121650791	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaatccttaaatacagtttCtataacagaatatgaggagg	8	5	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121650791	G	G	121650791	3	3	108	1	0	0	0	0	1	0	0	0	12922	913	32	4	1737	4	PTPRZ1	7	121650791	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	744200	121650791	37487872	383	105981											
IQUB	154865	broad.mit.edu	37	chr7	123105065	123105065	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagtttacattcatgttccTatataaaacacaaaaatata	2	6	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123105065	A	A	123105065	5	1	108	1	0	0	0	0	0	0	1	0	7890	1536	53	5	811	5	IQUB	7	123105065	Splice_Site	SNP	T	TCGA-44-2659-01A-01D-0969-08	1454274	123105065	36033598	384	105982											
ARF5	381	broad.mit.edu	37	chr7	127231266	127231266	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttccttttccccacaGtggtatgtccaggccacctg	7	14	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127231266	T	T	127231266	5	4	108	1	0	0	0	0	0	0	1	0	849	1043	36	3	478	3	ARF5	7	127231266	Splice_Site	SNP	G	TCGA-44-2659-01A-01D-0969-08	4126201	127231266	31907397	385	105983											
CCDC136	64753	broad.mit.edu	37	chr7	128452070	128452071	+	Missense_Mutation	DNP	GG	TT	TT													agtcctacgggaagagctatGgtagcatggtccccagcaat							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	128452071	TT	TT	128452070	3	4	108	1	0	0	0	0	1	0	0	0	2796	1348	47	2	2295	2	CCDC136	7	128452070	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	1220804	128452070	30686593	386	105984											
FLNC	2318	broad.mit.edu	37	chr7	128486498	128486498	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggtcaacaaggccaacCgattcactgtggagaccagg	12	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128486498	A	A	128486498	2	1	108	1	0	0	0	0	0	0	0	1	5993	644	23	1		1	FLNC	7	128486498	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	34428	128486498	30652165	387	105985											
FLNC	2318	broad.mit.edu	37	chr7	128487758	128487758	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctcctcacagggagcccGttccgcgtgccagtgaagga	12	14	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128487758	A	A	128487758	2	1	108	1	0	0	0	0	0	0	0	1	5993	1132	40	4		4	FLNC	7	128487758	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1260	128487758	30650905	388	105986											
TSGA13	114960	broad.mit.edu	37	chr7	130353924	130353924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggaaggcgctctccccgGgcgcggttctggtgggcatg	18	12	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130353924	T	T	130353924	3	4	108	1	0	0	0	0	1	0	0	0	16744	1232	43	2	73	2	TSGA13	7	130353924	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1866166	130353924	28784739	389	105987											
PLXNA4	91584	broad.mit.edu	37	chr7	131830026	131830026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggtctcaaagaggtcatCcacaaacttctgcagtgtgc	10	10	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131830026	A	A	131830026	3	1	108	1	0	0	0	0	1	0	0	0	12217	855	30	3	623	3	PLXNA4	7	131830026	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1476102	131830026	27308637	390	105988											
NUP205	23165	broad.mit.edu	37	chr7	135258392	135258392	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcataacaattacaattttAtcattgtagccaaaaaatgt	3	6	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135258392	C	C	135258392	1	2	108	0	1	0	0	0	0	0	0	0	10854	464	16	5		5	NUP205	7	135258392	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	3428366	135258392	23880271	391	105989											
NUP205	23165	broad.mit.edu	37	chr7	135304240	135304240	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtgttcacactgactgctCacctaagccaggccgtcctc	8	16	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135304240	T	T	135304240	3	4	108	1	0	0	0	0	1	0	0	0	10854	826	29	4	4147	4	NUP205	7	135304240	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	45848	135304240	23834423	392	105990											
MGAM	8972	broad.mit.edu	37	chr7	141755521	141755521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctcccgagaccagcccCcaggggtaaggacagagcat	12	13	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141755521	A	A	141755521	3	1	108	1	0	0	0	0	1	0	0	0	9634	623	22	2	3584	2	MGAM	7	141755521	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	6451281	141755521	17383142	393	105991											
MGAM	8972	broad.mit.edu	37	chr7	141760197	141760197	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagggtgtttgtaaatttgGgtggagtcagggtttgtagg	17	1	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141760197	A	A	141760197	1	1	108	0	1	0	0	0	0	0	0	0	9634	1247	43	4		4	MGAM	7	141760197	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4676	141760197	17378466	394	105992											
EPHA1	2041	broad.mit.edu	37	chr7	143096426	143096426	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtacagatggtggccccctCagactcagcagtgctctgct	12	13	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143096426	A	A	143096426	4	1	108	1	0	0	0	0	0	1	0	0	5207	835	29	3	2070	3	EPHA1	7	143096426	Nonsense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1336229	143096426	16042237	395	105993											
XRCC2	7516	broad.mit.edu	37	chr7	152373298	152373298	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaggccgcggccggggaGgcgggagcatgcgcaatagg	20	12	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152373298	T	T	152373298	1	4	108	0	1	0	0	0	0	0	0	0	17580	1015	35	2		2	XRCC2	7	152373298	5'Flank	SNP	G	TCGA-44-2659-01A-01D-0969-08	9276872	152373298	6765365	396	105994											
WDR60	55112	broad.mit.edu	37	chr7	158679866	158679866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaccagaggccgagacagGgctcatttgcagatggttta	13	8	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158679866	T	T	158679866	1	4	108	0	1	0	0	0	0	0	0	0	17438	1247	43	2		2	WDR60	7	158679866	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	6306568	158679866	458797	397	105995											
CSMD1	64478	broad.mit.edu	37	chr8	2876097	2876097	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtgttgcacgtaaatataGctgtggccccataaactgtc	10	10	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2876097	C	C	2876097	3	2	108	1	0	0	0	0	1	0	0	0	3978	971	34	4	2839	4	CSMD1	8	2876097	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08		2876097	143487925	398	105996											
TNKS	8658	broad.mit.edu	37	chr8	9413362	9413362	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctagcatcatttcctgtGcgctggatgctgattggtcc	11	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9413362	T	T	9413362	1	4	108	0	1	0	0	0	0	0	0	0	16442	1334	46	3		3	TNKS	8	9413362	5'Flank	SNP	G	TCGA-44-2659-01A-01D-0969-08	6537265	9413362	136950660	399	105997											
XKR6	286046	broad.mit.edu	37	chr8	10755798	10755798	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtacccagggatctcaggCgccatgggctcaacatcggg	14	13	2	0	rs61745501	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10755798	A	A	10755798	2	1	108	1	0	0	0	0	0	0	0	1	17562	755	27	3		3	XKR6	8	10755798	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	1342436	10755798	135608224	400	105998											
XKR6	286046	broad.mit.edu	37	chr8	10892674	10892674	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactatgacaaacagccagtCtcgtgcccagcccagcgtgg	10	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10892674	T	T	10892674	1	4	108	0	1	0	0	0	0	0	0	0	17562	928	32	4		4	XKR6	8	10892674	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	136876	10892674	135471348	401	105999											
GATA4	2626	broad.mit.edu	37	chr8	11607724	11607724	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgtgcaatgcctgcggCctctacatgaagctccacgg	11	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11607724	G	G	11607724	2	3	108	1	0	0	0	0	0	0	0	1	6318	726	26	4		4	GATA4	8	11607724	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	715050	11607724	134756298	402	106000											
ZNF705D	728957	broad.mit.edu	37	chr8	11970596	11970596	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagaggaaacaaaataattCacattggagagaaaccacat	7	6	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11970596	A	A	11970596	3	1	108	1	0	0	0	0	1	0	0	0	18236	826	29	3	850	3	ZNF705D	8	11970596	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	362872	11970596	134393426	403	106001											
LZTS1	11178	broad.mit.edu	37	chr8	20112440	20112440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaaatccccgctggacaGtgccgtgtaatctgggtgat	11	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20112440	T	T	20112440	3	4	108	1	0	0	0	0	1	0	0	0	9226	1020	36	3	1549	3	LZTS1	8	20112440	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	8141844	20112440	126251582	404	106002											
ADAM7	8756	broad.mit.edu	37	chr8	24350690	24350690	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactatttttttataccatgAttctacagacattggcctgg	6	8	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24350690	T	T	24350690	3	4	108	1	0	0	0	0	1	0	0	0	251	333	12	5	1852	5	ADAM7	8	24350690	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	4238250	24350690	122013332	405	106003											
DOCK5	80005	broad.mit.edu	37	chr8	25220537	25220537	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgtaacccagttttccCccaaccactcctctgttctc	4	17	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25220537	T	T	25220537	1	4	108	0	1	0	0	0	0	0	0	0	4730	638	22	4		4	DOCK5	8	25220537	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	869847	25220537	121143485	406	106004											
EBF2	64641	broad.mit.edu	37	chr8	25702281	25702281	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcaaggagatggtgccctCagctgatatgaggacctgtt	12	8	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25702281	T	T	25702281	1	4	108	0	1	0	0	0	0	0	0	0	4921	841	29	4		4	EBF2	8	25702281	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	481744	25702281	120661741	407	106005											
EBF2	64641	broad.mit.edu	37	chr8	25898597	25898597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagacagtgaatccccaCctcacatcccttctccccat	6	17	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25898597	A	A	25898597	1	1	108	0	1	0	0	0	0	0	0	0	4921	522	18	3		3	EBF2	8	25898597	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	196316	25898597	120465425	408	106006											
PTK2B	2185	broad.mit.edu	37	chr8	27312084	27312084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggaagctcatcgggagcGtggatgatctcctgccttcc	13	12	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27312084	T	T	27312084	3	4	108	1	0	0	0	0	1	0	0	0	12869	1145	40	3	2884	3	PTK2B	8	27312084	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1413487	27312084	119051938	409	106007											
GOT1L1	137362	broad.mit.edu	37	chr8	37794885	37794885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgtaaagcccatgtcctgGaagacgagtccatgcagttc	10	11	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37794885	T	T	37794885	3	4	108	1	0	0	0	0	1	0	0	0	6644	1165	41	3	705	3	GOT1L1	8	37794885	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	10482801	37794885	108569137	410	106008											
HOOK3	84376	broad.mit.edu	37	chr8	42761160	42761160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcacttgaacctgggagGtggaggttgcagtgagccaa	15	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42761160	T	T	42761160	1	4	108	0	1	0	0	0	0	0	0	0	7351	1276	44	3		3	HOOK3	8	42761160	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4966275	42761160	103602862	411	106009											
SNTG1	54212	broad.mit.edu	37	chr8	51351136	51351136	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcagaagacaaacagtaGgaggatttggattaagcata	10	6	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51351136	A	A	51351136	3	1	108	1	0	0	0	0	1	0	0	0	14988	1001	35	4	206	4	SNTG1	8	51351136	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	8589976	51351136	95012886	412	106010											
SNTG1	54212	broad.mit.edu	37	chr8	51363185	51363185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttatcactatatgtgtGgtcaaaacattaactcaatt	4	7	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51363185	T	T	51363185	1	4	108	0	1	0	0	0	0	0	0	0	14988	1363	47	2		2	SNTG1	8	51363185	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	12049	51363185	95000837	413	106011											
PXDNL	137902	broad.mit.edu	37	chr8	52287227	52287227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggtcccactcttgtacCaggaatcaggtcttcaacca	8	12	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52287227	A	A	52287227	3	1	108	1	0	0	0	0	1	0	0	0	12956	594	21	2	793	2	PXDNL	8	52287227	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	924042	52287227	94076795	414	106012											
PXDNL	137902	broad.mit.edu	37	chr8	52320977	52320977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggaaatttcacctaaggtGgcattcagtcggtaaagaat	10	7	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52320977	T	T	52320977	2	4	108	1	0	0	0	0	0	0	0	1	12956	1335	47	2		2	PXDNL	8	52320977	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	33750	52320977	94043045	415	106013											
PRDM14	63978	broad.mit.edu	37	chr8	70981463	70981463	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgggtgctccaggctGggagtgaccccgtacagaac	15	12	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70981463	T	T	70981463	2	4	108	1	0	0	0	0	0	0	0	1	12561	1335	47	2		2	PRDM14	8	70981463	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	18660486	70981463	75382559	416	106014											
PMP2	5375	broad.mit.edu	37	chr8	82355575	82355575	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattcagttttgtcaatggAagcaattgatttccatcatt	7	6	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82355575	T	T	82355575	1	4	108	0	1	0	0	0	0	0	0	0	12233	261	9	5		5	PMP2	8	82355575	3'UTR	SNP	A	TCGA-44-2659-01A-01D-0969-08	11374112	82355575	64008447	417	106015											
FABP12	646486	broad.mit.edu	37	chr8	82443460	82443460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttactggatatgatatgCaagtaaacatagctcaccca	6	8	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82443460	A	A	82443460	1	1	108	0	1	0	0	0	0	0	0	0	5402	725	25	3		3	FABP12	8	82443460	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	87885	82443460	63920562	418	106016											
DCAF4L2	138009	broad.mit.edu	37	chr8	88886197	88886197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgcggtcttttgctctcCatttcgttcggcggatgttc	11	11	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88886197	A	A	88886197	3	1	108	1	0	0	0	0	1	0	0	0	4305	594	21	2	1188	2	DCAF4L2	8	88886197	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	6442737	88886197	57477825	419	106017											
DECR1	1666	broad.mit.edu	37	chr8	91057321	91057321	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacaatgctgaatgtaaatAtcatttaaaatatgtattta	5	3	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91057321	G	G	91057321	1	3	108	0	1	0	0	0	0	0	0	0	4415	464	16	5		5	DECR1	8	91057321	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	2171124	91057321	55306701	420	106018											
SLC26A7	115111	broad.mit.edu	37	chr8	92350329	92350329	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattgttttaaggtgtttgaGaggtcagtaatgtatatatt	10	1	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92350329	T	T	92350329	1	4	108	0	1	0	0	0	0	0	0	0	14636	957	33	3		3	SLC26A7	8	92350329	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1293008	92350329	54013693	421	106019											
VPS13B	157680	broad.mit.edu	37	chr8	100246377	100246377	+	Intron	DEL	G	-	-													gggctcgctgagggggtaaaGggggagctcacctcttcatc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100246377	-	-	100246377	6	5	108	0	1	1	0	1	0	0	0	0	17317	1015	35	0		0	VPS13B	8	100246377	Intron	DEL	G	TCGA-44-2659-01A-01D-0969-08	7896048	100246377	46117645	422	106020											
RIMS2	9699	broad.mit.edu	37	chr8	105010526	105010526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggaattgcttgtgcctGtgtattgatatgatatagtt	11	3	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105010526	T	T	105010526	1	4	108	0	1	0	0	0	0	0	0	0	13479	1392	48	3		3	RIMS2	8	105010526	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4764149	105010526	41353496	423	106021											
TRHR	7201	broad.mit.edu	37	chr8	110099686	110099686	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaataaaggtgggcgcTggaaagaagatgttttgaga	15	4	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110099686	A	A	110099686	1	1	108	0	1	0	0	0	0	0	0	0	16604	1595	55	5		5	TRHR	8	110099686	5'Flank	SNP	T	TCGA-44-2659-01A-01D-0969-08	5089160	110099686	36264336	424	106022											
PKHD1L1	93035	broad.mit.edu	37	chr8	110442130	110442130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctgcctctttgcccatGttctgtagcttcttgtttct	7	12	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110442130	T	T	110442130	1	4	108	0	1	0	0	0	0	0	0	0	12067	1392	48	3		3	PKHD1L1	8	110442130	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	342444	110442130	35921892	425	106023											
PKHD1L1	93035	broad.mit.edu	37	chr8	110455867	110455867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagttatcattttggaatGttattcatgacttaacgggc	8	6	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110455867	T	T	110455867	1	4	108	0	1	0	0	0	0	0	0	0	12067	1392	48	3		3	PKHD1L1	8	110455867	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	13737	110455867	35908155	426	106024											
CSMD3	114788	broad.mit.edu	37	chr8	113299139	113299139	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggttatagttatcttaggaGatggttacagtataatggga	12	3	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113299139	T	T	113299139	1	4	108	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113299139	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2843272	113299139	33064883	427	106025											
CSMD3	114788	broad.mit.edu	37	chr8	113299268	113299268	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatccagtagttgcaatAtatttaatttctgcttgaga	6	5	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113299268	T	T	113299268	1	4	108	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113299268	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	129	113299268	33064754	428	106026											
CSMD3	114788	broad.mit.edu	37	chr8	113392721	113392721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggcaagacaatgaccaCataataagtactataataaa	6	6	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113392721	A	A	113392721	1	1	108	0	1	0	0	0	0	0	0	0	3980	493	17	3		3	CSMD3	8	113392721	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	93453	113392721	32971301	429	106027											
FAM91A1	157769	broad.mit.edu	37	chr8	124786511	124786511	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactgagattattccatgtAcagactttaagaaactctac	6	8	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124786511	G	G	124786511	1	3	108	0	1	0	0	0	0	0	0	0	5708	406	14	5		5	FAM91A1	8	124786511	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	11393790	124786511	21577511	430	106028											
OC90	729330	broad.mit.edu	37	chr8	133044327	133044327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaggaattgtcaggagaGcaaggactgtcggggcagct	16	7	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133044327	T	T	133044327	1	4	108	0	1	0	0	0	0	0	0	0	10909	986	34	3		3	OC90	8	133044327	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	8257816	133044327	13319695	431	106029											
LRRC6	23639	broad.mit.edu	37	chr8	133673737	133673737	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagattattttgaagataGagaatttttaaatcccggca	7	4	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133673737	T	T	133673737	2	4	108	1	0	0	0	0	0	0	0	1	9103	929	33	3		3	LRRC6	8	133673737	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	629410	133673737	12690285	432	106030											
TG	7038	broad.mit.edu	37	chr8	134042065	134042065	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctttcctcttttctgaaGggtccggagaggtgagtggc	15	8	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134042065	T	T	134042065	5	4	108	1	0	0	0	0	0	0	1	0	15936	1014	35	2	7198	2	TG	8	134042065	Splice_Site	SNP	G	TCGA-44-2659-01A-01D-0969-08	368328	134042065	12321957	433	106031											
FAM135B	51059	broad.mit.edu	37	chr8	139145140	139145140	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaaattctgttcctgggcaGacctgttatacagcagtttc	9	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139145140	T	T	139145140	1	4	108	0	1	0	0	0	0	0	0	0	5495	957	33	3		3	FAM135B	8	139145140	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5103075	139145140	7218882	434	106032											
FAM135B	51059	broad.mit.edu	37	chr8	139151256	139151256	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggcttagttggtagaggaAacatttgcgcaaatcagcat	11	6	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139151256	T	T	139151256	3	4	108	1	0	0	0	0	1	0	0	0	5495	14	1	5	358	5	FAM135B	8	139151256	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	6116	139151256	7212766	435	106033											
FAM135B	51059	broad.mit.edu	37	chr8	139323319	139323319	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgagaaatgcattttatcAgcagagttggagagggaagt	13	3	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139323319	T	T	139323319	1	4	108	0	1	0	0	0	0	0	0	0	5495	203	7	5		5	FAM135B	8	139323319	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	172063	139323319	7040703	436	106034											
COL22A1	169044	broad.mit.edu	37	chr8	139688869	139688869	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagggatcccaggagctcCtcgatccccctagaaagaga	10	14	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139688869	T	T	139688869	3	4	108	1	0	0	0	0	1	0	0	0	3713	690	24	4	1898	4	COL22A1	8	139688869	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	365550	139688869	6675153	437	106035											
COL22A1	169044	broad.mit.edu	37	chr8	139734263	139734263	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcccaaactggtgccaacCgcatcagtgaccaaccttgg	9	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139734263	T	T	139734263	1	4	108	0	1	0	0	0	0	0	0	0	3713	667	23	4		4	COL22A1	8	139734263	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	45394	139734263	6629759	438	106036											
BAI1	575	broad.mit.edu	37	chr8	143623594	143623594	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaagctggactcggagctGagccgggcccaggagaaggc	17	10	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143623594	T	T	143623594	2	4	108	1	0	0	0	0	0	0	0	1	1303	1277	45	3		3	BAI1	8	143623594	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	3889331	143623594	2740428	439	106037											
LY6D	8581	broad.mit.edu	37	chr8	143866957	143866957	+	Intron	DEL	C	-	-													ccagccaacacccacaacagCcagggatgtcccccagcccc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143866957	-	-	143866957	6	5	108	0	1	1	0	1	0	0	0	0	9178	754	26	0		0	LY6D	8	143866957	Intron	DEL	C	TCGA-44-2659-01A-01D-0969-08	243363	143866957	2497065	440	106038											
EPPK1	83481	broad.mit.edu	37	chr8	144942384	144942384	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgatctgggcctccagcaGgcggatgccgtgctcccgga	16	14	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144942384	A	A	144942384	2	1	108	1	0	0	0	0	0	0	0	1	5232	991	35	4		4	EPPK1	8	144942384	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1075427	144942384	1421638	441	106039											
VLDLR	7436	broad.mit.edu	37	chr9	2651657	2651657	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacttgcatatcttttcctGactgatcttaaaggtttcta	5	8	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2651657	T	T	2651657	1	4	108	0	1	0	0	0	0	0	0	0	17301	1305	45	3		3	VLDLR	9	2651657	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08		2651657	138561774	442	106040											
RFX3	5991	broad.mit.edu	37	chr9	3266366	3266366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaatattaatgtttgtgCtagaataaaagaaaatgctc	7	3	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3266366	A	A	3266366	1	1	108	0	1	0	0	0	0	0	0	0	13372	812	28	3		3	RFX3	9	3266366	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	614709	3266366	137947065	443	106041											
RLN2	6019	broad.mit.edu	37	chr9	5300244	5300244	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgctgtctgcggcttcacTttgtctattgcgaataagtt	9	9	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5300244	A	A	5300244	3	1	108	1	0	0	0	0	1	0	0	0	13503	1609	56	5	149	5	RLN2	9	5300244	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	2033878	5300244	135913187	444	106042											
MLANA	2315	broad.mit.edu	37	chr9	5906856	5906856	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcagttacttcttctcacCcactcacctttatcaattta	1	13	5	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5906856	G	G	5906856	1	3	108	0	1	0	0	0	0	0	0	0	9704	638	22	4		4	MLANA	9	5906856	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	606612	5906856	135306575	445	106043											
GLDC	2731	broad.mit.edu	37	chr9	6592236	6592236	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataccaagctacagaaacacAaacaaaatggaaaacatcaa	4	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6592236	T	T	6592236	1	4	108	0	1	0	0	0	0	0	0	0	6497	145	5	5		5	GLDC	9	6592236	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	685380	6592236	134621195	446	106044											
PTPRD	5789	broad.mit.edu	37	chr9	8470947	8470947	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaggggggcggaaatgcaGcagattaaataacgaataaa	15	4	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8470947	C	C	8470947	1	2	108	0	1	0	0	0	0	0	0	0	12907	986	34	4		4	PTPRD	9	8470947	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1878711	8470947	132742484	447	106045											
TYRP1	7306	broad.mit.edu	37	chr9	12708116	12708116	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactgctccagacaacctgGgatacacttatgaaattcaa	6	10	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12708116	T	T	12708116	4	4	108	1	0	0	0	0	0	1	0	0	16942	1233	43	2	1403	2	TYRP1	9	12708116	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	4237169	12708116	128505315	448	106046											
IFNA7	3444	broad.mit.edu	37	chr9	21202067	21202067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcaaggccctcctattaCgcaggctgtgggtctgaggc	13	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21202067	A	A	21202067	3	1	108	1	0	0	0	0	1	0	0	0	7612	536	19	3	475	3	IFNA7	9	21202067	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	8493951	21202067	120011364	449	106047											
LINGO2	158038	broad.mit.edu	37	chr9	28150757	28150757	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagagtatcagaatcccttCcaaaataagatagtaagcag	7	9	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28150757	A	A	28150757	1	1	108	0	1	0	0	0	0	0	0	0	8888	870	30	3		3	LINGO2	9	28150757	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	6948690	28150757	113062674	450	106048											
TAF1L	138474	broad.mit.edu	37	chr9	32632739	32632739	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgttccaaggagcagcgtGaacttcatcatcaatcttca	9	10	5	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32632739	A	A	32632739	3	1	108	1	0	0	0	0	1	0	0	0	15642	1290	45	4	2645	4	TAF1L	9	32632739	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	4481982	32632739	108580692	451	106049											
TAF1L	138474	broad.mit.edu	37	chr9	32633201	32633201	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaatatccactaattcccGaatatagtaaccctgtcttg	4	10	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32633201	T	T	32633201	2	4	108	1	0	0	0	0	0	0	0	1	15642	1057	37	3		3	TAF1L	9	32633201	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	462	32633201	108580230	452	106050											
KIF24	347240	broad.mit.edu	37	chr9	34319235	34319235	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccaccacgtggagcccctCgaggccttaaaaagctggta	10	15	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34319235	A	A	34319235	1	1	108	0	1	0	0	0	0	0	0	0	8362	899	31	3		3	KIF24	9	34319235	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1686034	34319235	106894196	453	106051											
ZCCHC7	84186	broad.mit.edu	37	chr9	37126597	37126597	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagctgtcagatgggtcaGaggtcatcactttgtctgat	11	9	5	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37126597	T	T	37126597	4	4	108	1	0	0	0	0	0	1	0	0	17719	943	33	3	270	3	ZCCHC7	9	37126597	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2807362	37126597	104086834	454	106052											
FRMPD1	22844	broad.mit.edu	37	chr9	37739992	37739992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttttctcgtctggcagGgttgggtgggggtcaggggg	20	6	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37739992	T	T	37739992	1	4	108	0	1	0	0	0	0	0	0	0	6117	1247	43	2		2	FRMPD1	9	37739992	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	613395	37739992	103473439	455	106053											
RORB	6096	broad.mit.edu	37	chr9	77257566	77257566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgagggttattacaacGtcgattccggtcagccgtcc	11	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77257566	T	T	77257566	3	4	108	1	0	0	0	0	1	0	0	0	13640	1145	40	3	486	3	RORB	9	77257566	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	39517574	77257566	63955865	456	106054											
TRPM6	140803	broad.mit.edu	37	chr9	77419570	77419570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcatgaaggtgtcctctGtgactattcagcagttccct	10	10	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77419570	T	T	77419570	1	4	108	0	1	0	0	0	0	0	0	0	16715	1392	48	3		3	TRPM6	9	77419570	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	162004	77419570	63793861	457	106055											
SLC28A3	64078	broad.mit.edu	37	chr9	86905119	86905119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcaatggtagagaaccCggcggtcatgatggcgtgga	15	9	1	2	rs11568388		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86905119	A	A	86905119	3	1	108	1	0	0	0	0	1	0	0	0	14647	652	23	1	1008	1	SLC28A3	9	86905119	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	9485549	86905119	54308312	458	106056											
SLC28A3	64078	broad.mit.edu	37	chr9	86912912	86912912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactgtagcccgattcccCataagacaggtctccagtaa	8	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86912912	A	A	86912912	3	1	108	1	0	0	0	0	1	0	0	0	14647	595	21	2	1431	2	SLC28A3	9	86912912	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	7793	86912912	54300519	459	106057											
FAM75C1	441452	broad.mit.edu	37	chr9	90536968	90536968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccacgctccttggagagCcaccaatggcaagtctgaga	12	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90536968	A	A	90536968	3	1	108	1	0	0	0	0	1	0	0	0	5676	739	26	3	2160	3	FAM75C1	9	90536968	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	3624056	90536968	50676463	460	106058											
ROR2	4920	broad.mit.edu	37	chr9	94493469	94493469	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacacgttaggaaaacctcCggggtacaacaaaaccattc	7	11	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94493469	A	A	94493469	1	1	108	0	1	0	0	0	0	0	0	0	13638	667	23	1		1	ROR2	9	94493469	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3956501	94493469	46719962	461	106059											
HIATL1	84641	broad.mit.edu	37	chr9	97218682	97218682	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacctccctgctagaagcagGagcagctctgagttctcccc	10	15	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97218682	T	T	97218682	1	4	108	0	1	0	0	0	0	0	0	0	7165	1189	41	3		3	HIATL1	9	97218682	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2725213	97218682	43994749	462	106060											
COL15A1	1306	broad.mit.edu	37	chr9	101817203	101817203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctacctgggatcccacaGtgtctgggttgatgggccca	13	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101817203	T	T	101817203	1	4	108	0	1	0	0	0	0	0	0	0	3704	1044	36	3		3	COL15A1	9	101817203	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4598521	101817203	39396228	463	106061											
GRIN3A	116443	broad.mit.edu	37	chr9	104432903	104432903	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttccatcccctacaatataGaggtcgaagtcaaagttcat	6	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104432903	T	T	104432903	2	4	108	1	0	0	0	0	0	0	0	1	6849	929	33	3		3	GRIN3A	9	104432903	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	2615700	104432903	36780528	464	106062											
OR13C3	138803	broad.mit.edu	37	chr9	107298376	107298376	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaaaatgaccatcagtGgaagaaccaggaaggccata	10	7	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107298376	C	C	107298376	3	2	108	1	0	0	0	0	1	0	0	0	11029	1348	47	4	328	4	OR13C3	9	107298376	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2865473	107298376	33915055	465	106063											
SLC44A1	23446	broad.mit.edu	37	chr9	108127811	108127811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttggcatcagtaaatcGccttattcgttaccacctag	6	10	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108127811	T	T	108127811	3	4	108	1	0	0	0	0	1	0	0	0	14749	1087	38	3	1343	3	SLC44A1	9	108127811	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	829435	108127811	33085620	466	106064											
EPB41L4B	54566	broad.mit.edu	37	chr9	111975825	111975825	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtaagtaaatatttgctCctaaaagacagcctgaacag	8	7	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111975825	A	A	111975825	1	1	108	0	1	0	0	0	0	0	0	0	5198	870	30	3		3	EPB41L4B	9	111975825	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3848014	111975825	29237606	467	106065											
TLR4	7099	broad.mit.edu	37	chr9	120476354	120476354	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtatctgttgtagcagttCtggtctataagttctatttt	8	5	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120476354	T	T	120476354	2	4	108	1	0	0	0	0	0	0	0	1	16076	912	32	4		4	TLR4	9	120476354	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	8500529	120476354	20737077	468	106066											
GSN	2934	broad.mit.edu	37	chr9	124088797	124088797	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctccctgccagagccgtgTggtccaaggcaaggagcccg	14	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124088797	C	C	124088797	3	2	108	1	0	0	0	0	1	0	0	0	6891	1696	59	5	1651	5	GSN	9	124088797	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	3612443	124088797	17124634	469	106067											
NDUFA8	4702	broad.mit.edu	37	chr9	124914760	124914760	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctcagctttacctcatgCgggtcagaatagagaacaca	8	10	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124914760	T	T	124914760	1	4	108	0	1	0	0	0	0	0	0	0	10366	783	27	4		4	NDUFA8	9	124914760	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	825963	124914760	16298671	470	106068											
PBX3	5090	broad.mit.edu	37	chr9	128725283	128725283	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgaattttgttttgtctcActtctaggtggataccctcc	8	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128725283	T	T	128725283	1	4	108	0	1	0	0	0	0	0	0	0	11588	174	6	5		5	PBX3	9	128725283	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	3810523	128725283	12488148	471	106069											
ENG	2022	broad.mit.edu	37	chr9	130588868	130588868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccctctcagctgcccaCtcaaggatctgggtcttggg	13	14	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130588868	A	A	130588868	3	1	108	1	0	0	0	0	1	0	0	0	5159	564	20	3	1606	3	ENG	9	130588868	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1863585	130588868	10624563	472	106070											
PTGES2	80142	broad.mit.edu	37	chr9	130886279	130886279	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatttggagtagatgccaGggctacctccccaagagagg	15	9	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130886279	A	A	130886279	1	1	108	0	1	0	0	0	0	0	0	0	12853	1015	35	4		4	PTGES2	9	130886279	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	297411	130886279	10327152	473	106071											
PHYHD1	254295	broad.mit.edu	37	chr9	131703056	131703056	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcagtctgtgcttgctcgaCtacccagcgtccaagaggtt	10	12	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131703056	G	G	131703056	1	3	108	0	1	0	0	0	0	0	0	0	11960	580	20	4		4	PHYHD1	9	131703056	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	816777	131703056	9510375	474	106072											
ASS1	445	broad.mit.edu	37	chr9	133364724	133364724	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggaaaaatggctaggtatCtacgagaccccagcaggcac	11	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133364724	G	G	133364724	3	3	108	1	0	0	0	0	1	0	0	0	1065	903	32	4	885	4	ASS1	9	133364724	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1661668	133364724	7848707	475	106073											
LAMC3	10319	broad.mit.edu	37	chr9	133914177	133914177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcatttagcacagggaGgctgactgacacagatgcag	12	10	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133914177	T	T	133914177	1	4	108	0	1	0	0	0	0	0	0	0	8688	1015	35	2		2	LAMC3	9	133914177	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	549453	133914177	7299254	476	106074											
LAMC3	10319	broad.mit.edu	37	chr9	133932444	133932444	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgaatcctgtgctccgGgatacaagagggagatgcca	13	9	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133932444	T	T	133932444	4	4	108	1	0	0	0	0	0	1	0	0	8688	1233	43	2	2114	2	LAMC3	9	133932444	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	18267	133932444	7280987	477	106075											
RALGDS	5900	broad.mit.edu	37	chr9	136031197	136031197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggccccaaggccaccCtgatgttagcacctccacta	8	17	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136031197	A	A	136031197	1	1	108	0	1	0	0	0	0	0	0	0	13124	696	24	2		2	RALGDS	9	136031197	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2098753	136031197	5182234	478	106076											
WDR5	11091	broad.mit.edu	37	chr9	137021720	137021720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaggccacacaggtgaGggcctgcgctcctgcagtca	12	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137021720	T	T	137021720	1	4	108	0	1	0	0	0	0	0	0	0	17430	1015	35	2		2	WDR5	9	137021720	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	990523	137021720	4191711	479	106077											
SNAPC4	6621	broad.mit.edu	37	chr9	139283129	139283129	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgccccagggcacaggtgGgcccatgagccactggggtg	17	12	0	1	rs148085093	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139283129	A	A	139283129	1	1	108	0	1	0	0	0	0	0	0	0	14951	1247	43	4		4	SNAPC4	9	139283129	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2261409	139283129	1930302	480	106078											
SEC16A	9919	broad.mit.edu	37	chr9	139371251	139371251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtcactgggcaaggctgCtgggggagccaccagagggc	17	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139371251	A	A	139371251	3	1	108	1	0	0	0	0	1	0	0	0	14099	797	28	3	6376	3	SEC16A	9	139371251	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	88122	139371251	1842180	481	106079											
PTGDS	5730	broad.mit.edu	37	chr9	139873413	139873413	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtgggtccggagggtccTggccgacgcgggtgggggtc	22	10	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139873413	C	C	139873413	1	2	108	0	1	0	0	0	0	0	0	0	12848	1595	55	5		5	PTGDS	9	139873413	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	502162	139873413	1340018	482	106080											
ABCA2	20	broad.mit.edu	37	chr9	139907067	139907067	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcaggtgggaggggcgGtgaggctaggcaggcagtga	23	6	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139907067	A	A	139907067	1	1	108	0	1	0	0	0	0	0	0	0	32	1276	44	4		4	ABCA2	9	139907067	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	33654	139907067	1306364	483	106081											
NOXA1	10811	broad.mit.edu	37	chr9	140327859	140327859	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagacggccctgaccagGccctgggcctcagcgaccac	12	17	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140327859	A	A	140327859	1	1	108	0	1	0	0	0	0	0	0	0	10655	1218	42	4		4	NOXA1	9	140327859	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	420792	140327859	885572	484	106082											
CACNA1B	774	broad.mit.edu	37	chr9	140997285	140997285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaccctgcaacccgccCcccaggaggctgtgtgtgct	11	18	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140997285	A	A	140997285	1	1	108	0	1	0	0	0	0	0	0	0	2565	638	22	2		2	CACNA1B	9	140997285	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	669426	140997285	216146	485	106083											
AKR1E2	83592	broad.mit.edu	37	chr10	4875556	4875556	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagctgtggtgcacctgCcataagaagtccttggtgga	13	8	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4875556	A	A	4875556	4	1	108	1	0	0	0	0	0	1	0	0	474	747	26	3	232	3	AKR1E2	10	4875556	Nonsense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08		4875556	130659191	486	106084											
AKR1C3	8644	broad.mit.edu	37	chr10	5141584	5141584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcaaacttcaaccgcagGcagctggagatgatcctcaa	10	11	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5141584	T	T	5141584	3	4	108	1	0	0	0	0	1	0	0	0	471	1194	42	3	531	3	AKR1C3	10	5141584	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	266028	5141584	130393163	487	106085											
ITIH2	3698	broad.mit.edu	37	chr10	7763078	7763078	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtagagcctagggcctccCcaggatacacagaacaacac	9	13	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7763078	G	G	7763078	1	3	108	0	1	0	0	0	0	0	0	0	7974	638	22	4		4	ITIH2	10	7763078	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2621494	7763078	127771669	488	106086											
SEC61A2	55176	broad.mit.edu	37	chr10	12185254	12185254	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaacagatggaaacatgtgGattagcaatgagttttcaat	9	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12185254	T	T	12185254	1	4	108	0	1	0	0	0	0	0	0	0	14114	1189	41	3		3	SEC61A2	10	12185254	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4422176	12185254	123349493	489	106087											
MCM10	55388	broad.mit.edu	37	chr10	13246127	13246127	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtagtgatgagagaccagGtggtcatggagcagattgcc	16	6	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13246127	C	C	13246127	1	2	108	0	1	0	0	0	0	0	0	0	9478	1276	44	4		4	MCM10	10	13246127	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1060873	13246127	122288620	490	106088											
UCMA	221044	broad.mit.edu	37	chr10	13271811	13271811	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagaagtcacctggttgggGgatgagtggtttgtggggga	20	3	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13271811	A	A	13271811	1	1	108	0	1	0	0	0	0	0	0	0	17052	1247	43	4		4	UCMA	10	13271811	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	25684	13271811	122262936	491	106089											
FRMD4A	55691	broad.mit.edu	37	chr10	13782541	13782541	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgacctcttgtctgaccGttcagtttcttgtagtgctc	9	11	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13782541	A	A	13782541	2	1	108	1	0	0	0	0	0	0	0	1	6111	1136	40	4		4	FRMD4A	10	13782541	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	510730	13782541	121752206	492	106090											
PLXDC2	84898	broad.mit.edu	37	chr10	20534470	20534470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacatgaaaaccacgccaGttgatgaactgtatccgttt	7	10	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20534470	T	T	20534470	1	4	108	0	1	0	0	0	0	0	0	0	12213	1044	36	3		3	PLXDC2	10	20534470	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	6751929	20534470	115000277	493	106091											
APBB1IP	54518	broad.mit.edu	37	chr10	26800864	26800864	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catccccagcaatgggctgtActccaaaaaccttgtgggtt	9	12	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26800864	G	G	26800864	1	3	108	0	1	0	0	0	0	0	0	0	762	406	14	5		5	APBB1IP	10	26800864	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	6266394	26800864	108733883	494	106092											
MTPAP	55149	broad.mit.edu	37	chr10	30629219	30629219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcaactgattacttgacCgtacgcgtgaccgttcagaa	11	10	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30629219	A	A	30629219	3	1	108	1	0	0	0	0	1	0	0	0	10050	652	23	1	1285	1	MTPAP	10	30629219	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	3828355	30629219	104905528	495	106093											
LYZL2	119180	broad.mit.edu	37	chr10	30918543	30918543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaggcagattcctggtgCctgccgcagaggctgacttc	13	11	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30918543	A	A	30918543	3	1	108	1	0	0	0	0	1	0	0	0	9220	739	26	3	512	3	LYZL2	10	30918543	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	289324	30918543	104616204	496	106094											
EPC1	80314	broad.mit.edu	37	chr10	32582490	32582490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttacatagaatatgtaTatacttgttatatacaaatg	4	4	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32582490	A	A	32582490	1	1	108	0	1	0	0	0	0	0	0	0	5202	1421	49	5		5	EPC1	10	32582490	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	1663947	32582490	102952257	497	106095											
ANKRD30A	91074	broad.mit.edu	37	chr10	37453892	37453892	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagaagtagtcattgtaatCaacaaaaagaacatatgggc	8	5	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37453892	G	G	37453892	1	3	108	0	1	0	0	0	0	0	0	0	658	841	29	4		4	ANKRD30A	10	37453892	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	4871402	37453892	98080855	498	106096											
ANKRD30A	91074	broad.mit.edu	37	chr10	37482152	37482152	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctattccaactaaagcCttagaattgatggacatgca	7	8	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37482152	A	A	37482152	2	1	108	1	0	0	0	0	0	0	0	1	658	668	24	2		2	ANKRD30A	10	37482152	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	28260	37482152	98052595	499	106097											
GDF2	2658	broad.mit.edu	37	chr10	48413769	48413769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtttcgtcggcgtcacatCgtcagccaaggggaagaagc	14	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48413769	A	A	48413769	3	1	108	1	0	0	0	0	1	0	0	0	6378	884	31	3	194	3	GDF2	10	48413769	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	10931617	48413769	87120978	500	106098											
PCDH15	65217	broad.mit.edu	37	chr10	55719477	55719477	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcgtgtatttcaaaatcgGacagaaatcaatacctatat	5	7	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55719477	T	T	55719477	1	4	108	0	1	0	0	0	0	0	0	0	11605	1189	41	3		3	PCDH15	10	55719477	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	7305708	55719477	79815270	501	106099											
FAM13C	220965	broad.mit.edu	37	chr10	61023983	61023983	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggagggagagggtgggGgagaaaaagagaaaaggaaa	21	0	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61023983	C	C	61023983	1	2	108	0	1	0	0	0	0	0	0	0	5500	1247	43	4		4	FAM13C	10	61023983	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5304506	61023983	74510764	502	106100											
ANK3	288	broad.mit.edu	37	chr10	61894041	61894041	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcatacctgctctttggaTggcacaaggagttcttcaat	9	9	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61894041	A	A	61894041	2	1	108	1	0	0	0	0	0	0	0	1	622	1451	51	5		5	ANK3	10	61894041	Silent	SNP	T	TCGA-44-2659-01A-01D-0969-08	870058	61894041	73640706	503	106101											
CTNNA3	29119	broad.mit.edu	37	chr10	67726505	67726505	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaagatggatctgggcaCtaaatatgaatcaaagataa	8	5	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67726505	A	A	67726505	5	1	108	1	0	0	0	0	0	0	1	0	4048	579	20	3	430	3	CTNNA3	10	67726505	Splice_Site	SNP	C	TCGA-44-2659-01A-01D-0969-08	5832464	67726505	67808242	504	106102											
TET1	80312	broad.mit.edu	37	chr10	70405010	70405010	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccacattcttcacactccAtcataaatcatcatgctagt	2	13	5	0	rs77500190		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70405010	G	G	70405010	3	3	108	1	0	0	0	0	1	0	0	0	15891	217	8	5	2534	5	TET1	10	70405010	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	2678505	70405010	65129737	505	106103											
ADAMTS14	140766	broad.mit.edu	37	chr10	72520242	72520242	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcctcgggccccaaccCtggcccagaccctggcccaa	11	19	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72520242	T	T	72520242	3	4	108	1	0	0	0	0	1	0	0	0	259	681	24	4	3400	4	ADAMTS14	10	72520242	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2115232	72520242	63014505	506	106104											
ADK	132	broad.mit.edu	37	chr10	76153869	76153869	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtaccatttttttgcccCattaaattatttatgttcct	4	8	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76153869	T	T	76153869	1	4	108	0	1	0	0	0	0	0	0	0	320	609	21	4		4	ADK	10	76153869	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3633627	76153869	59380878	507	106105											
SAMD8	142891	broad.mit.edu	37	chr10	76869039	76869039	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcagcaagtcacagggGcctctggagtggacaagacc	13	11	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76869039	T	T	76869039	1	4	108	0	1	0	0	0	0	0	0	0	13936	1218	42	3		3	SAMD8	10	76869039	5'Flank	SNP	G	TCGA-44-2659-01A-01D-0969-08	715170	76869039	58665708	508	106106											
POLR3A	11128	broad.mit.edu	37	chr10	79789048	79789049	+	Intron	INS	-	A	A													caccccatctctgaccctgcINSaagacccgggaccgctgacc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79789049	A	A	79789048	6	5	108	0	1	1	1	0	0	0	0	0	12323	725	25	0		0	POLR3A	10	79789048	Intron	INS	-	TCGA-44-2659-01A-01D-0969-08	2920009	79789048	55745699	509	106107											
NRG3	10718	broad.mit.edu	37	chr10	84118482	84118482	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacagcgtttccccctgtgCtttccctgacagatacgacg	9	14	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84118482	T	T	84118482	1	4	108	0	1	0	0	0	0	0	0	0	10744	812	28	4		4	NRG3	10	84118482	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	4329434	84118482	51416265	510	106108											
GRID1	2894	broad.mit.edu	37	chr10	87407105	87407105	+	Frame_Shift_Del	DEL	G	-	-													ctcatatacagcagaatcccGgacagtgccataagacattt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87407105	-	-	87407105	7	5	108	1	0	1	0	1	0	0	0	0	6837	1115	39	0	998	0	GRID1	10	87407105	Frame_Shift_Del	DEL	G	TCGA-44-2659-01A-01D-0969-08	3288623	87407105	48127642	511	106109											
ACTA2	59	broad.mit.edu	37	chr10	90699439	90699439	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtttctccttgatgtcccgGacaatctcacgctcagctgt	8	13	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90699439	T	T	90699439	2	4	108	1	0	0	0	0	0	0	0	1	192	1161	41	3		3	ACTA2	10	90699439	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	3292334	90699439	44835308	512	106110											
PCGF5	84333	broad.mit.edu	37	chr10	93031353	93031353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caattttaaatatgtgtccaGttgtggatgcctcttatctg	8	7	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93031353	A	A	93031353	1	1	108	0	1	0	0	0	0	0	0	0	11671	1044	36	4		4	PCGF5	10	93031353	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2331914	93031353	42503394	513	106111											
CYP2C18	1562	broad.mit.edu	37	chr10	96480183	96480184	+	Frame_Shift_Ins	INS	-	T	T													tcaacagtctgaatttactgINSttgaaagcttgatagccact							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96480184	T	T	96480183	7	5	108	1	0	1	1	0	0	0	0	0	4198	1377	48	0	872	0	CYP2C18	10	96480183	Frame_Shift_Ins	INS	-	TCGA-44-2659-01A-01D-0969-08	3448830	96480183	39054564	514	106112											
SORBS1	10580	broad.mit.edu	37	chr10	97131923	97131923	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtatcaacacagaaaggtGaactcaaaagcaaggggagt	11	7	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97131923	A	A	97131923	1	1	108	0	1	0	0	0	0	0	0	0	15041	1305	45	4		4	SORBS1	10	97131923	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	651740	97131923	38402824	515	106113											
TLL2	7093	broad.mit.edu	37	chr10	98155947	98155947	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccagaaaggcacgattgCatttgtctttaactctgaat	7	10	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98155947	T	T	98155947	1	4	108	0	1	0	0	0	0	0	0	0	16069	725	25	4		4	TLL2	10	98155947	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1024024	98155947	37378800	516	106114											
SLIT1	6585	broad.mit.edu	37	chr10	98819969	98819969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtcagcccagccctgGgtgttatctgctgggctcac	12	15	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98819969	T	T	98819969	1	4	108	0	1	0	0	0	0	0	0	0	14853	1247	43	2		2	SLIT1	10	98819969	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	664022	98819969	36714778	517	106115											
CPN1	1369	broad.mit.edu	37	chr10	101808487	101808487	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtataagtgatctctacaGtgcaccgtcaagctcagcct	8	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101808487	A	A	101808487	1	1	108	0	1	0	0	0	0	0	0	0	3841	1044	36	4		4	CPN1	10	101808487	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2988518	101808487	33726260	518	106116											
SEC31B	25956	broad.mit.edu	37	chr10	102249075	102249075	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggagacagggggctgtgaGggaagaatcccttgtagctc	16	8	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102249075	C	C	102249075	2	2	108	1	0	0	0	0	0	0	0	1	14112	987	35	4		4	SEC31B	10	102249075	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	440588	102249075	33285672	519	106117											
SMC3	9126	broad.mit.edu	37	chr10	112356170	112356170	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttataggtgaccaagtcagcCatcggggtgctctaactggg	13	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112356170	T	T	112356170	3	4	108	1	0	0	0	0	1	0	0	0	14898	594	21	4	2052	4	SMC3	10	112356170	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	10107095	112356170	23178577	520	106118											
NRAP	4892	broad.mit.edu	37	chr10	115410292	115410292	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctttgttgttcatagtcctCtgtgtatctcacctgaaatg	7	9	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115410292	T	T	115410292	3	4	108	1	0	0	0	0	1	0	0	0	10733	922	32	4	4644	4	NRAP	10	115410292	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	3054122	115410292	20124455	521	106119											
ATRNL1	26033	broad.mit.edu	37	chr10	117061553	117061553	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaactgccacctgctccCgtaagtatttatctagagtg	9	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117061553	G	G	117061553	3	3	108	1	0	0	0	0	1	0	0	0	1211	666	23	4	2884	4	ATRNL1	10	117061553	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1651261	117061553	18473194	522	106120											
ATRNL1	26033	broad.mit.edu	37	chr10	117486760	117486760	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttttaaccccctccagcaActgcttcgagaacgacagca	6	14	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117486760	T	T	117486760	3	4	108	1	0	0	0	0	1	0	0	0	1211	40	2	5	3904	5	ATRNL1	10	117486760	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	425207	117486760	18047987	523	106121											
C10orf96	374355	broad.mit.edu	37	chr10	118101765	118101765	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaatgaaaataacttattTtgaatgaatgaattttccaa	4	3	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118101765	A	A	118101765	1	1	108	0	1	0	0	0	0	0	0	0	1638	1856	64	5		5	C10orf96	10	118101765	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	615005	118101765	17432982	524	106122											
HSPA12A	259217	broad.mit.edu	37	chr10	118434156	118434156	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcactaattatttctagccCtgattgttctcatcttccct	4	12	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118434156	A	A	118434156	1	1	108	0	1	0	0	0	0	0	0	0	7473	696	24	2		2	HSPA12A	10	118434156	3'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	332391	118434156	17100591	525	106123											
HSPA12A	259217	broad.mit.edu	37	chr10	118436037	118436037	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggagcatagcatggagaaGagcaggcagtgagggtctac	16	7	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118436037	T	T	118436037	1	4	108	0	1	0	0	0	0	0	0	0	7473	957	33	3		3	HSPA12A	10	118436037	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1881	118436037	17098710	526	106124											
KCNK18	338567	broad.mit.edu	37	chr10	118969187	118969187	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttacccgccccctcctcTccaagtggtgccccaaatct	5	19	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118969187	C	C	118969187	3	2	108	1	0	0	0	0	1	0	0	0	8135	1551	54	5	542	5	KCNK18	10	118969187	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	533150	118969187	16565560	527	106125											
ACADSB	36	broad.mit.edu	37	chr10	124813283	124813283	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcgatgcagaatactgacGtctataggagtgggacccct	11	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124813283	T	T	124813283	1	4	108	0	1	0	0	0	0	0	0	0	115	1160	40	3		3	ACADSB	10	124813283	3'UTR	SNP	G	TCGA-44-2659-01A-01D-0969-08	5844096	124813283	10721464	528	106126											
CLRN3	119467	broad.mit.edu	37	chr10	129681939	129681939	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagttttctgcagagcaccGagtctcacagggccactcac	10	14	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129681939	T	T	129681939	1	4	108	0	1	0	0	0	0	0	0	0	3591	1073	37	3		3	CLRN3	10	129681939	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4868656	129681939	5852808	529	106127											
ANO9	338440	broad.mit.edu	37	chr11	431934	431934	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggggttcacgagtcaggGggagtgaggtgctgggagaa	20	5	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	431934	A	A	431934	1	1	108	0	1	0	0	0	0	0	0	0	704	1247	43	4		4	ANO9	11	431934	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08		431934	134574582	530	106128											
PHRF1	57661	broad.mit.edu	37	chr11	608329	608329	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctttggctctgaggagcGgacggtgacctgtgtgactg	15	9	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	608329	C	C	608329	3	2	108	1	0	0	0	0	1	0	0	0	11956	1116	39	4	2920	4	PHRF1	11	608329	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	176395	608329	134398187	531	106129											
MUC5B	727897	broad.mit.edu	37	chr11	1213656	1213656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatccgcctccgtggcatcCacctctgtggcatccagctc	9	17	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1213656	A	A	1213656	1	1	108	0	1	0	0	0	0	0	0	0	10073	609	21	2		2	MUC5B	11	1213656	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	605327	1213656	133792860	532	106130											
MUC5B	727897	broad.mit.edu	37	chr11	1219587	1219587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacggagcttcccactgaCcctgaggcccaggtagactt	13	13	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1219587	A	A	1219587	1	1	108	0	1	0	0	0	0	0	0	0	10073	522	18	3		3	MUC5B	11	1219587	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	5931	1219587	133786929	533	106131											
MUC5B	727897	broad.mit.edu	37	chr11	1262069	1262069	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagccaggacccctttcccaTgccccttgcaggcccggccc	10	20	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1262069	A	A	1262069	1	1	108	0	1	0	0	0	0	0	0	0	10073	1479	51	5		5	MUC5B	11	1262069	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	42482	1262069	133744447	534	106132											
OR51B5	282763	broad.mit.edu	37	chr11	5364170	5364170	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actacaagcacagctgggtaCagtcggttgaaggtggtatc	13	8	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5364170	G	G	5364170	2	3	108	1	0	0	0	0	0	0	0	1	11185	465	17	4		4	OR51B5	11	5364170	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	4102101	5364170	129642346	535	106133											
OR52N5	390075	broad.mit.edu	37	chr11	5799229	5799229	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaacactccaatcaggagAgcaaccattagaccatagat	6	11	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5799229	T	T	5799229	2	4	108	1	0	0	0	0	0	0	0	1	11224	291	11	5		5	OR52N5	11	5799229	Silent	SNP	A	TCGA-44-2659-01A-01D-0969-08	435059	5799229	129207287	536	106134											
OR56A1	120796	broad.mit.edu	37	chr11	6048891	6048891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaggaattcagagactGggacagtggagctgttgctg	17	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6048891	T	T	6048891	3	4	108	1	0	0	0	0	1	0	0	0	11227	1348	47	2	916	2	OR56A1	11	6048891	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	249662	6048891	128957625	537	106135											
CCKBR	887	broad.mit.edu	37	chr11	6292833	6292833	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcactgacccttccagaCatacgaaacacaaaccacaa	4	15	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6292833	A	A	6292833	1	1	108	0	1	0	0	0	0	0	0	0	2909	493	17	3		3	CCKBR	11	6292833	3'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	243942	6292833	128713683	538	106136											
DCHS1	8642	broad.mit.edu	37	chr11	6661905	6661905	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggccgctctaactgcaGcagccccgtgtgtgcgtcga	13	14	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6661905	A	A	6661905	2	1	108	1	0	0	0	0	0	0	0	1	4320	962	34	4		4	DCHS1	11	6661905	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	369072	6661905	128344611	539	106137											
NLRP14	338323	broad.mit.edu	37	chr11	7061107	7061107	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgaggacttttgttcaaatCttgttaacttcttctaatac	5	9	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7061107	A	A	7061107	1	1	108	0	1	0	0	0	0	0	0	0	10571	928	32	3		3	NLRP14	11	7061107	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	399202	7061107	127945409	540	106138											
NLRP14	338323	broad.mit.edu	37	chr11	7064372	7064372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaagtccccctagtgtGctgggccgcttgtacttgtc	12	13	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7064372	T	T	7064372	3	4	108	1	0	0	0	0	1	0	0	0	10571	1319	46	3	1125	3	NLRP14	11	7064372	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	3265	7064372	127942144	541	106139											
EIF3F	8665	broad.mit.edu	37	chr11	8008774	8008774	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggactatttcagtgctcCgagaagtatcaccagtaacc	10	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8008774	A	A	8008774	1	1	108	0	1	0	0	0	0	0	0	0	5058	667	23	1		1	EIF3F	11	8008774	5'Flank	SNP	C	TCGA-44-2659-01A-01D-0969-08	944402	8008774	126997742	542	106140											
SPON1	10418	broad.mit.edu	37	chr11	14284462	14284462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctacgctggagggaggCccgagagagccggcggagtg	19	9	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14284462	A	A	14284462	3	1	108	1	0	0	0	0	1	0	0	0	15200	739	26	3	2258	3	SPON1	11	14284462	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	6275688	14284462	120722054	543	106141											
ABCC8	6833	broad.mit.edu	37	chr11	17469910	17469910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtatgggacaggagggacCcagaggtacagcctgtggta	17	7	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17469910	A	A	17469910	1	1	108	0	1	0	0	0	0	0	0	0	58	638	22	2		2	ABCC8	11	17469910	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3185448	17469910	117536606	544	106142											
USH1C	10083	broad.mit.edu	37	chr11	17554815	17554815	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttactggtggtacattcGcagcacatcatagagatagt	9	9	1	1	rs121908370		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17554815	T	T	17554815	2	4	108	1	0	0	0	0	0	0	0	1	17160	1095	38	3		3	USH1C	11	17554815	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	84905	17554815	117451701	545	106143											
SAA4	6291	broad.mit.edu	37	chr11	18253967	18253967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttagcagcccagacacCcccaggtcctctttgggcag	11	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18253967	A	A	18253967	3	1	108	1	0	0	0	0	1	0	0	0	13911	623	22	2	195	2	SAA4	11	18253967	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	699152	18253967	116752549	546	106144											
MRGPRX2	117194	broad.mit.edu	37	chr11	19077218	19077218	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttccagatccataatattagGaaccactgaatgccaaaggg	8	9	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19077218	C	C	19077218	3	2	108	1	0	0	0	0	1	0	0	0	9861	1165	41	4	264	4	MRGPRX2	11	19077218	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	823251	19077218	115929298	547	106145											
NELL1	4745	broad.mit.edu	37	chr11	20699660	20699660	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttggggaggagggtctgtCtggggagtgctcatttgttg	20	4	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20699660	T	T	20699660	1	4	108	0	1	0	0	0	0	0	0	0	10428	928	32	4		4	NELL1	11	20699660	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1622442	20699660	114306856	548	106146											
SLC17A6	57084	broad.mit.edu	37	chr11	22360229	22360229	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatctgcagggccgtttcCgtaaaccctggtggctcaga	11	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22360229	T	T	22360229	1	4	108	0	1	0	0	0	0	0	0	0	14534	667	23	4		4	SLC17A6	11	22360229	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1660569	22360229	112646287	549	106147											
QSER1	79832	broad.mit.edu	37	chr11	32995145	32995145	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccttttccaattgttaatAcaattcctacttaaaacatt	1	9	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32995145	T	T	32995145	1	4	108	0	1	0	0	0	0	0	0	0	12990	406	14	5		5	QSER1	11	32995145	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	10634916	32995145	102011371	550	106148											
NAT10	55226	broad.mit.edu	37	chr11	34139979	34139979	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttctgatctggagctgaggGagttgaaggagagcttgcag	16	6	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34139979	T	T	34139979	4	4	108	1	0	0	0	0	0	1	0	0	10268	1175	41	3	735	3	NAT10	11	34139979	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1144834	34139979	100866537	551	106149											
PRR5L	79899	broad.mit.edu	37	chr11	36422595	36422595	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgagggcctgaaggcaGcccctggagaagccctttcc	13	14	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36422595	T	T	36422595	1	4	108	0	1	0	0	0	0	0	0	0	12708	986	34	3		3	PRR5L	11	36422595	5'UTR	SNP	G	TCGA-44-2659-01A-01D-0969-08	2282616	36422595	98583921	552	106150											
OR4C13	283092	broad.mit.edu	37	chr11	49974443	49974443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttcttcatgcaaccataCagatcctcttcatctgtcaa	4	13	6	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49974443	A	A	49974443	3	1	108	1	0	0	0	0	1	0	0	0	11141	479	17	3	471	3	OR4C13	11	49974443	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	13551848	49974443	85032073	553	106151											
OR4A5	81318	broad.mit.edu	37	chr11	51412283	51412283	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacaatgagcaggttccccAccactgtcaccaagtatgtg	8	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51412283	T	T	51412283	3	4	108	1	0	0	0	0	1	0	0	0	11137	159	6	5	838	5	OR4A5	11	51412283	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	1437840	51412283	83594233	554	106152											
OR4P4	81300	broad.mit.edu	37	chr11	55406728	55406728	+	Frame_Shift_Del	DEL	G	-	-													tgaagaacgccatgaggaaaGtgtggtgttgtcaaatactc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55406728	-	-	55406728	7	5	108	1	0	1	0	1	0	0	0	0	11174	1029	36	0	897	0	OR4P4	11	55406728	Frame_Shift_Del	DEL	G	TCGA-44-2659-01A-01D-0969-08	3994445	55406728	79599788	555	106153											
OR5L1	219437	broad.mit.edu	37	chr11	55579661	55579661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcacaaagccttctccaCctgtgcttcccacctcacag	6	18	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579661	A	A	55579661	3	1	108	1	0	0	0	0	1	0	0	0	11264	507	18	3	721	3	OR5L1	11	55579661	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	172933	55579661	79426855	556	106154											
OR5M1	390168	broad.mit.edu	37	chr11	56380768	56380768	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacattggaagaatagcaaaTgtctacaaaggagaggtggc	12	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56380768	A	A	56380768	3	1	108	1	0	0	0	0	1	0	0	0	11266	1464	51	5	740	5	OR5M1	11	56380768	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	801107	56380768	78625748	557	106155											
OR9Q1	219956	broad.mit.edu	37	chr11	57798414	57798414	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatgagtttgctgagctctCactgccacatatgcaaccat	7	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57798414	T	T	57798414	1	4	108	0	1	0	0	0	0	0	0	0	11349	841	29	4		4	OR9Q1	11	57798414	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1417646	57798414	77208102	558	106156											
OR5B21	219968	broad.mit.edu	37	chr11	58275002	58275002	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaaagaccaccaacttgcTgatgcgtgtgtcagagcatg	10	11	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58275002	A	A	58275002	3	1	108	1	0	0	0	0	1	0	0	0	11245	1580	55	5	354	5	OR5B21	11	58275002	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	476588	58275002	76731514	559	106157											
MPEG1	219972	broad.mit.edu	37	chr11	58979381	58979381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggggcctggcaagtcagGtagcatgttggggttgatga	18	6	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58979381	T	T	58979381	3	4	108	1	0	0	0	0	1	0	0	0	9817	1261	44	3	1196	3	MPEG1	11	58979381	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	704379	58979381	76027135	560	106158											
DDB1	1642	broad.mit.edu	37	chr11	61077162	61077162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctttacagcaatgaacCcaacttcttctactgcttaa	4	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61077162	A	A	61077162	1	1	108	0	1	0	0	0	0	0	0	0	4356	638	22	2		2	DDB1	11	61077162	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2097781	61077162	73929354	561	106159											
C11orf9	745	broad.mit.edu	37	chr11	61543749	61543749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagtggcgtggctcttgCagcctccctccctgccccct	9	20	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61543749	A	A	61543749	1	1	108	0	1	0	0	0	0	0	0	0	1683	725	25	3		3	C11orf9	11	61543749	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	466587	61543749	73462767	562	106160											
BEST1	7439	broad.mit.edu	37	chr11	61719197	61719197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgacaggctctgaccagGgcctctgatccctacaaacc	8	16	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61719197	T	T	61719197	1	4	108	0	1	0	0	0	0	0	0	0	1409	1247	43	2		2	BEST1	11	61719197	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	175448	61719197	73287319	563	106161											
SLC22A10	387775	broad.mit.edu	37	chr11	63066947	63066947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttctcacaacaatgcctGggatgatgttgataaatgat	9	7	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63066947	T	T	63066947	1	4	108	0	1	0	0	0	0	0	0	0	14554	1363	47	2		2	SLC22A10	11	63066947	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1347750	63066947	71939569	564	106162											
SLC22A12	116085	broad.mit.edu	37	chr11	64360097	64360097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaactatgcctgtgggtgCcctcactgttccacagggtc	10	14	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64360097	A	A	64360097	1	1	108	0	1	0	0	0	0	0	0	0	14556	754	26	3		3	SLC22A12	11	64360097	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1293150	64360097	70646419	565	106163											
SIPA1	6494	broad.mit.edu	37	chr11	65413583	65413583	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaacaccctaggtcttcAccaggggcagtgggggagcc	14	12	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65413583	G	G	65413583	1	3	108	0	1	0	0	0	0	0	0	0	14441	174	6	5		5	SIPA1	11	65413583	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	1053486	65413583	69592933	566	106164											
TSGA10IP	254187	broad.mit.edu	37	chr11	65715521	65715521	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctgccttccaggcctcCaagcggaatggaaaggccta	13	12	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65715521	T	T	65715521	2	4	108	1	0	0	0	0	0	0	0	1	16743	581	21	4		4	TSGA10IP	11	65715521	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	301938	65715521	69290995	567	106165											
TPCN2	219931	broad.mit.edu	37	chr11	68853447	68853447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctccgtgcagcctggggGttccctcacctccgggcacg	12	16	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68853447	T	T	68853447	1	4	108	0	1	0	0	0	0	0	0	0	16520	1276	44	3		3	TPCN2	11	68853447	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3137926	68853447	66153069	568	106166											
C2CD3	26005	broad.mit.edu	37	chr11	73768561	73768561	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatacacaacaactgggtatCgatactttccgctctgtcaa	7	11	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73768561	T	T	73768561	2	4	108	1	0	0	0	0	0	0	0	1	2176	871	31	4		4	C2CD3	11	73768561	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	4915114	73768561	61237955	569	106167											
LRRC32	2615	broad.mit.edu	37	chr11	76371428	76371429	+	Frame_Shift_Ins	INS	-	G	G													ccagattggcaaaggtgtatINSgggggcaggtcccgcagggc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76371429	G	G	76371428	7	5	108	1	0	1	1	0	0	0	0	0	9074	1451	51	0	783	0	LRRC32	11	76371428	Frame_Shift_Ins	INS	-	TCGA-44-2659-01A-01D-0969-08	2602867	76371428	58635088	570	106168											
NARS2	79731	broad.mit.edu	37	chr11	78147595	78147595	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttttctatgatatcttaTggcacaacaattacatattg	4	6	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78147595	C	C	78147595	1	2	108	0	1	0	0	0	0	0	0	0	10265	1479	51	5		5	NARS2	11	78147595	3'UTR	SNP	T	TCGA-44-2659-01A-01D-0969-08	1776167	78147595	56858921	571	106169											
PCF11	51585	broad.mit.edu	37	chr11	82868476	82868476	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctcggaggggggccgcGgcgcaatgtcagagcagacg	19	11	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82868476	T	T	82868476	1	4	108	0	1	0	0	0	0	0	0	0	11667	1131	39	1		1	PCF11	11	82868476	5'UTR	SNP	G	TCGA-44-2659-01A-01D-0969-08	4720881	82868476	52138040	572	106170											
DLG2	1740	broad.mit.edu	37	chr11	83195417	83195417	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgccagagagttctaaAggtcgattttattttcaagg	12	5	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83195417	T	T	83195417	1	4	108	0	1	0	0	0	0	0	0	0	4595	87	3	5		5	DLG2	11	83195417	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	326941	83195417	51811099	573	106171											
CCDC89	220388	broad.mit.edu	37	chr11	85396473	85396473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctgcttgagggtcTgcagctggctgcgcagctgt	17	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85396473	A	A	85396473	3	1	108	1	0	0	0	0	1	0	0	0	2894	1580	55	5	427	5	CCDC89	11	85396473	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	2201056	85396473	49610043	574	106172											
GRM5	2915	broad.mit.edu	37	chr11	88337916	88337916	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctccattctcatcgaatAggatcgtatctccagaaacc	6	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88337916	G	G	88337916	3	3	108	1	0	0	0	0	1	0	0	0	6866	420	15	5	2298	5	GRM5	11	88337916	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	2941443	88337916	46668600	575	106173											
TYR	7299	broad.mit.edu	37	chr11	88924636	88924636	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgaattcatatttacAgtctcttatccaaagtccta	3	9	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88924636	G	G	88924636	1	3	108	0	1	0	0	0	0	0	0	0	16939	203	7	5		5	TYR	11	88924636	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	586720	88924636	46081880	576	106174											
NAALAD2	10003	broad.mit.edu	37	chr11	89891342	89891342	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacttgatgttgaagaaGgagtgggaatcccccgaata	12	7	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89891342	T	T	89891342	4	4	108	1	0	0	0	0	0	1	0	0	10222	1001	35	2	852	2	NAALAD2	11	89891342	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	966706	89891342	45115174	577	106175											
NAALAD2	10003	broad.mit.edu	37	chr11	89896515	89896515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtcaccgggactcctgGgtatttggagctattgaccc	14	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89896515	T	T	89896515	3	4	108	1	0	0	0	0	1	0	0	0	10222	1241	43	2	1151	2	NAALAD2	11	89896515	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	5173	89896515	45110001	578	106176											
FAT3	120114	broad.mit.edu	37	chr11	92531657	92531657	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaaaagtttttcacggtGgactccagtacaggtgcaat	10	8	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92531657	T	T	92531657	2	4	108	1	0	0	0	0	0	0	0	1	5748	1335	47	2		2	FAT3	11	92531657	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	2635142	92531657	42474859	579	106177											
FAT3	120114	broad.mit.edu	37	chr11	92534270	92534270	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcattcctgtctatatccaCgtcttgccccctgaaacgtt	5	15	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92534270	G	G	92534270	3	3	108	1	0	0	0	0	1	0	0	0	5748	535	19	4	8125	4	FAT3	11	92534270	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2613	92534270	42472246	580	106178											
CNTN5	53942	broad.mit.edu	37	chr11	100095350	100095350	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcccttttactgaatatgcAaagttcccccttaagccacc	6	14	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100095350	T	T	100095350	1	4	108	0	1	0	0	0	0	0	0	0	3676	145	5	5		5	CNTN5	11	100095350	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	7561080	100095350	34911166	581	106179											
CNTN5	53942	broad.mit.edu	37	chr11	100208113	100208113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgaacagccagccctcaGcagagagagcacctatcagc	10	14	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100208113	T	T	100208113	1	4	108	0	1	0	0	0	0	0	0	0	3676	986	34	3		3	CNTN5	11	100208113	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	112763	100208113	34798403	582	106180											
DYNC2H1	79659	broad.mit.edu	37	chr11	103229014	103229014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagatccataacagctgGttccaaatttgatagagaaa	10	7	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103229014	T	T	103229014	3	4	108	1	0	0	0	0	1	0	0	0	4886	1261	44	3	12438	3	DYNC2H1	11	103229014	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	3020901	103229014	31777502	583	106181											
CARD16	114769	broad.mit.edu	37	chr11	104912157	104912157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgagttccagtttgcaaCtctttacctaaacctgggat	7	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104912157	A	A	104912157	3	1	108	1	0	0	0	0	1	0	0	0	2673	564	20	3	33	3	CARD16	11	104912157	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1683143	104912157	30094359	584	106182											
ELMOD1	55531	broad.mit.edu	37	chr11	107514602	107514602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgccatcaccacagtgCcatcatctgaagattaacaa	5	14	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107514602	A	A	107514602	1	1	108	0	1	0	0	0	0	0	0	0	5110	754	26	3		3	ELMOD1	11	107514602	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2602445	107514602	27491914	585	106183											
PTS	5805	broad.mit.edu	37	chr11	112101052	112101052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgttccagtcagtattGcttcattgttggcccttgta	8	9	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112101052	T	T	112101052	1	4	108	0	1	0	0	0	0	0	0	0	12926	1334	46	3		3	PTS	11	112101052	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4586450	112101052	22905464	586	106184											
DRD2	1813	broad.mit.edu	37	chr11	113283629	113283630	+	Intron	DNP	GG	TT	TT													caccagaggcagagggctctGggtaaagccggacaagttcc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	113283630	TT	TT	113283629	1	4	108	0	1	0	0	0	0	0	0	0	4797	1363	47	2		2	DRD2	11	113283629	Intron	DNP	GG	TCGA-44-2659-01A-01D-0969-08	1182577	113283629	21722887	587	106185											
VPS11	55823	broad.mit.edu	37	chr11	118942726	118942726	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtctcgctctgtcacccagGagtgcagtggcgtgatctcg	13	12	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118942726	T	T	118942726	1	4	108	0	1	0	0	0	0	0	0	0	17315	1189	41	3		3	VPS11	11	118942726	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5659097	118942726	16063790	588	106186											
TECTA	7007	broad.mit.edu	37	chr11	120983847	120983847	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaccctcttcaattattacGaaatcaactggaccacgggg	7	12	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120983847	C	C	120983847	3	2	108	1	0	0	0	0	1	0	0	0	15869	1059	37	4	567	4	TECTA	11	120983847	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2041121	120983847	14022669	589	106187											
OR8G2	26492	broad.mit.edu	37	chr11	124095613	124095613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcacctgcatacccccatGtactatttcctcagtggtct	5	15	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124095613	T	T	124095613	3	4	108	1	0	0	0	0	1	0	0	0	11329	1377	48	3	218	3	OR8G2	11	124095613	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	3111766	124095613	10910903	590	106188											
OR8B3	390271	broad.mit.edu	37	chr11	124266919	124266919	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtcaacatgtaacattcaGagatgacaaaaaagagaaag	9	5	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124266919	T	T	124266919	3	4	108	1	0	0	0	0	1	0	0	0	11322	942	33	3	614	3	OR8B3	11	124266919	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	171306	124266919	10739597	591	106189											
OR8A1	390275	broad.mit.edu	37	chr11	124440930	124440930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgcagaaaacgctgagGggtaaactgttttgatgcaa	13	7	0	3	rs145520583		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124440930	T	T	124440930	3	4	108	1	0	0	0	0	1	0	0	0	11319	1223	43	2	968	2	OR8A1	11	124440930	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	174011	124440930	10565586	592	106190											
PKNOX2	63876	broad.mit.edu	37	chr11	125300031	125300031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtgccccagggacaaacCccgatggtaagaactggggc	15	12	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125300031	A	A	125300031	3	1	108	1	0	0	0	0	1	0	0	0	12078	623	22	2	1220	2	PKNOX2	11	125300031	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	859101	125300031	9706485	593	106191											
VPS26B	112936	broad.mit.edu	37	chr11	134109794	134109794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttaagaacctttgtacaGgcttctctcaagtgggccaa	11	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134109794	T	T	134109794	1	4	108	0	1	0	0	0	0	0	0	0	17325	1015	35	2		2	VPS26B	11	134109794	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	8809763	134109794	896722	594	106192											
C12orf53	196500	broad.mit.edu	37	chr12	6804697	6804697	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgggggtaggtgagtccccGaaggcccccagcacagtgac	16	12	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6804697	A	A	6804697	2	1	108	1	0	0	0	0	0	0	0	1	1711	1049	37	4		4	C12orf53	12	6804697	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08		6804697	127047198	595	106193											
CLSTN3	9746	broad.mit.edu	37	chr12	7293797	7293797	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggttagctctctgaagacGaattacctgagaggctcttg	12	8	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7293797	T	T	7293797	1	4	108	0	1	0	0	0	0	0	0	0	3595	1073	37	3		3	CLSTN3	12	7293797	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	489100	7293797	126558098	596	106194											
A2ML1	144568	broad.mit.edu	37	chr12	9007509	9007509	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcattttttttttttttttGagacggagtctcgctccgtc	7	8	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9007509	C	C	9007509	1	2	108	0	1	0	0	0	0	0	0	0	5	1305	45	4		4	A2ML1	12	9007509	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1713712	9007509	124844386	597	106195											
PZP	5858	broad.mit.edu	37	chr12	9301592	9301592	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatttccatgctctgtatcTatggagaaaagaaaaacgta	7	7	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9301592	G	G	9301592	1	3	108	0	1	0	0	0	0	0	0	0	12977	1536	53	5		5	PZP	12	9301592	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	294083	9301592	124550303	598	106196											
CLEC12A	160364	broad.mit.edu	37	chr12	10137385	10137385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagtctagggcaataatatCatgttggaagtgtaattttt	10	3	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10137385	A	A	10137385	1	1	108	0	1	0	0	0	0	0	0	0	3529	841	29	3		3	CLEC12A	12	10137385	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	835793	10137385	123714510	599	106197											
CLEC1A	51267	broad.mit.edu	37	chr12	10226002	10226002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagtagctctgagacgcGgcaaattcctgtgaaaagca	11	9	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10226002	T	T	10226002	2	4	108	1	0	0	0	0	0	0	0	1	3537	1103	39	1		1	CLEC1A	12	10226002	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	88617	10226002	123625893	600	106198											
PTPRO	5800	broad.mit.edu	37	chr12	15668624	15668624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaggggtgcaatgtgcgaGctcaaatcattatcatcgta	12	8	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15668624	T	T	15668624	1	4	108	0	1	0	0	0	0	0	0	0	12917	986	34	3		3	PTPRO	12	15668624	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5442622	15668624	118183271	601	106199											
MGST1	4257	broad.mit.edu	37	chr12	16510706	16510706	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagttcagtgaagatgtctcAgggtcttggagactgaggaa	15	5	3	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16510706	T	T	16510706	1	4	108	0	1	0	0	0	0	0	0	0	9653	203	7	5		5	MGST1	12	16510706	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	842082	16510706	117341189	602	106200											
PLEKHA5	54477	broad.mit.edu	37	chr12	19418828	19418828	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attctgtgttcaaaacttgcGttggttaaaatggatattga	9	4	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19418828	A	A	19418828	1	1	108	0	1	0	0	0	0	0	0	0	12154	1160	40	4		4	PLEKHA5	12	19418828	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2908122	19418828	114433067	603	106201											
ERGIC2	51290	broad.mit.edu	37	chr12	29509476	29509476	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattttatgatgagaaaaaTgtgtatagaaaaaaaaatcc	6	4	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29509476	C	C	29509476	1	2	108	0	1	0	0	0	0	0	0	0	5266	1479	51	5		5	ERGIC2	12	29509476	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	10090648	29509476	104342419	604	106202											
OVCH1	341350	broad.mit.edu	37	chr12	29650693	29650693	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgaaggcgggggtctcGccctttatcccctcctgcgg	15	13	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29650693	T	T	29650693	1	4	108	0	1	0	0	0	0	0	0	0	11417	1102	38	3		3	OVCH1	12	29650693	5'Flank	SNP	G	TCGA-44-2659-01A-01D-0969-08	141217	29650693	104201202	605	106203											
TMTC1	83857	broad.mit.edu	37	chr12	29659658	29659658	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcccaaaatgtgtcaccCtgaactcggaatgagagaaa	9	9	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29659658	A	A	29659658	1	1	108	0	1	0	0	0	0	0	0	0	16383	696	24	2		2	TMTC1	12	29659658	3'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	8965	29659658	104192237	606	106204											
KIF21A	55605	broad.mit.edu	37	chr12	39734030	39734030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgcttttcatactgagaCtgatttttaagcaaccttgc	6	8	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39734030	A	A	39734030	3	1	108	1	0	0	0	0	1	0	0	0	8358	564	20	3	2869	3	KIF21A	12	39734030	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	10074372	39734030	94117865	607	106205											
ABCD2	225	broad.mit.edu	37	chr12	40012397	40012397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagaagtgggtccatcgaCaggacaacagatggtatctg	12	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40012397	A	A	40012397	1	1	108	0	1	0	0	0	0	0	0	0	61	493	17	3		3	ABCD2	12	40012397	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	278367	40012397	93839498	608	106206											
CNTN1	1272	broad.mit.edu	37	chr12	41365318	41365318	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctccaacctggtgatcGttgacactcaccatttctgt	7	14	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41365318	A	A	41365318	1	1	108	0	1	0	0	0	0	0	0	0	3672	1160	40	4		4	CNTN1	12	41365318	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1352921	41365318	92486577	609	106207											
NELL2	4753	broad.mit.edu	37	chr12	45170058	45170058	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctgtgcttatcaaccacTtgccataaacatatttaaga	6	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45170058	A	A	45170058	1	1	108	0	1	0	0	0	0	0	0	0	10429	1624	56	5		5	NELL2	12	45170058	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	3804740	45170058	88681837	610	106208											
COL2A1	1280	broad.mit.edu	37	chr12	48387876	48387876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcacagagtaaaataacaGtggaaagctgccctgggctg	13	8	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48387876	T	T	48387876	1	4	108	0	1	0	0	0	0	0	0	0	3719	1044	36	3		3	COL2A1	12	48387876	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3217818	48387876	85464019	611	106209											
LIMA1	51474	broad.mit.edu	37	chr12	50586248	50586249	+	Missense_Mutation	DNP	GG	AT	AT													atcataccttcattgctttgGgaggagaactttcagaaaga							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	50586249	AT	AT	50586248	3	1	108	1	0	0	0	0	1	0	0	0	8868	1232	43	4	1164	4	LIMA1	12	50586248	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	2198372	50586248	83265647	612	106210											
KRT82	3888	broad.mit.edu	37	chr12	52788890	52788890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcccacgatgctgcagcCcccattgctcctgaggacgc	11	16	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52788890	A	A	52788890	3	1	108	1	0	0	0	0	1	0	0	0	8567	623	22	2	134	2	KRT82	12	52788890	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2202642	52788890	81063005	613	106211											
KRT3	3850	broad.mit.edu	37	chr12	53186469	53186469	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacctcactctccctctgtCccttcttagtaggtaacatc	4	16	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53186469	A	A	53186469	1	1	108	0	1	0	0	0	0	0	0	0	8537	870	30	3		3	KRT3	12	53186469	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	397579	53186469	80665426	614	106212											
ITGA5	3678	broad.mit.edu	37	chr12	54797398	54797398	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccagtccacaccccgccctCtgggccataccctgaggtag	10	18	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54797398	A	A	54797398	1	1	108	0	1	0	0	0	0	0	0	0	7949	928	32	3		3	ITGA5	12	54797398	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1610929	54797398	79054497	615	106213											
PPP1R1A	5502	broad.mit.edu	37	chr12	54976615	54976615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacagatgggcgccagccCccccttgctctccagacccc	9	20	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54976615	A	A	54976615	1	1	108	0	1	0	0	0	0	0	0	0	12468	638	22	2		2	PPP1R1A	12	54976615	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	179217	54976615	78875280	616	106214											
DDIT3	1649	broad.mit.edu	37	chr12	57910683	57910683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgatttcctgcttgagcCgttcattctcttcagctagc	8	13	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57910683	A	A	57910683	3	1	108	1	0	0	0	0	1	0	0	0	4363	652	23	1	94	1	DDIT3	12	57910683	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2934068	57910683	75941212	617	106215											
KIF5A	3798	broad.mit.edu	37	chr12	57963762	57963762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcacctcgtcttgcccCtttgcaggagagaatgtgcc	9	14	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57963762	A	A	57963762	1	1	108	0	1	0	0	0	0	0	0	0	8375	696	24	2		2	KIF5A	12	57963762	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	53079	57963762	75888133	618	106216											
PPM1H	57460	broad.mit.edu	37	chr12	63083523	63083523	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaatgtagatgttggagtCatgcaccttcaggtcatggt	11	6	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63083523	A	A	63083523	3	1	108	1	0	0	0	0	1	0	0	0	12442	826	29	3	355	3	PPM1H	12	63083523	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	5119761	63083523	70768372	619	106217											
MDM1	56890	broad.mit.edu	37	chr12	68708818	68708819	+	Missense_Mutation	DNP	CC	AA	AA													gcttgcccgttttcctgtccCcttcctcttcattgtcgtcc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	68708819	AA	AA	68708818	3	1	108	1	0	0	0	0	1	0	0	0	9505	623	22	2	759	2	MDM1	12	68708818	Missense_Mutation	DNP	CC	TCGA-44-2659-01A-01D-0969-08	5625295	68708818	65143077	620	106218											
CPSF6	11052	broad.mit.edu	37	chr12	69656388	69656388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtgtgtattcttaacaGtaactataactccaaggcta	7	7	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69656388	T	T	69656388	1	4	108	0	1	0	0	0	0	0	0	0	3861	1044	36	3		3	CPSF6	12	69656388	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	947570	69656388	64195507	621	106219											
CCT2	10576	broad.mit.edu	37	chr12	69986638	69986638	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatcacttgaacccagcggGtggaggttgcagtgagccga	15	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69986638	A	A	69986638	1	1	108	0	1	0	0	0	0	0	0	0	2983	1276	44	4		4	CCT2	12	69986638	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	330250	69986638	63865257	622	106220											
FGD6	55785	broad.mit.edu	37	chr12	95602937	95602937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctgcactggtctggcccCgagacttcttcctcttcttt	8	14	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95602937	A	A	95602937	3	1	108	1	0	0	0	0	1	0	0	0	5894	652	23	1	2249	1	FGD6	12	95602937	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	25616299	95602937	38248958	623	106221											
C12orf63	374467	broad.mit.edu	37	chr12	97052115	97052115	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtatgaggctgaataTggagagaaggtaagtttaag	15	2	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97052115	C	C	97052115	2	2	108	1	0	0	0	0	0	0	0	1	1719	1471	51	5		5	C12orf63	12	97052115	Silent	SNP	T	TCGA-44-2659-01A-01D-0969-08	1449178	97052115	36799780	624	106222											
SLC17A8	246213	broad.mit.edu	37	chr12	100787050	100787050	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccacagggatttccacaggGatctttcatgaactgttagg	10	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100787050	T	T	100787050	1	4	108	0	1	0	0	0	0	0	0	0	14536	1189	41	3		3	SLC17A8	12	100787050	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3734935	100787050	33064845	625	106223											
UTP20	27340	broad.mit.edu	37	chr12	101727153	101727153	+	Frame_Shift_Del	DEL	G	-	-													atggtaactgatatctttttGgactgggaatcatatcagtt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101727153	-	-	101727153	7	5	108	1	0	1	0	1	0	0	0	0	17226	1339	47	0	3602	0	UTP20	12	101727153	Frame_Shift_Del	DEL	G	TCGA-44-2659-01A-01D-0969-08	940103	101727153	32124742	626	106224											
CCDC63	160762	broad.mit.edu	37	chr12	111336973	111336973	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtcttaggaaacatttccAgaactttctgtgactgagca	9	8	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111336973	G	G	111336973	1	3	108	0	1	0	0	0	0	0	0	0	2862	203	7	5		5	CCDC63	12	111336973	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	9609820	111336973	22514922	627	106225											
OAS2	4939	broad.mit.edu	37	chr12	113447062	113447063	+	Intron	DNP	GG	TT	TT													gccggtaaaagtcatctaaaGgaggcgttgtctggaaatag							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	113447063	TT	TT	113447062	1	4	108	0	1	0	0	0	0	0	0	0	10895	1015	35	2		2	OAS2	12	113447062	Intron	DNP	GG	TCGA-44-2659-01A-01D-0969-08	2110089	113447062	20404833	628	106226											
RASAL1	8437	broad.mit.edu	37	chr12	113553049	113553049	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgccagggagttagaacGgaagagggtgttggggtcca	19	5	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113553049	C	C	113553049	3	2	108	1	0	0	0	0	1	0	0	0	13171	1116	39	4	1434	4	RASAL1	12	113553049	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	105987	113553049	20298846	629	106227											
MED13L	23389	broad.mit.edu	37	chr12	116420148	116420148	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttcataacaacaaaaaTaacaacatcaaaagtaaata	1	6	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116420148	C	C	116420148	1	2	108	0	1	0	0	0	0	0	0	0	9524	1421	49	5		5	MED13L	12	116420148	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	2867099	116420148	17431747	630	106228											
FBXO21	23014	broad.mit.edu	37	chr12	117604777	117604777	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaccaccccatacagtgcTgcagtcacgtgctggccgat	10	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117604777	A	A	117604777	2	1	108	1	0	0	0	0	0	0	0	1	5790	1567	55	5		5	FBXO21	12	117604777	Silent	SNP	T	TCGA-44-2659-01A-01D-0969-08	1184629	117604777	16247118	631	106229											
GCN1L1	10985	broad.mit.edu	37	chr12	120614022	120614022	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagcagactagaaatagcTaagggggacagaaagcactg	13	8	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120614022	A	A	120614022	5	1	108	1	0	0	0	0	0	0	1	0	6361	1536	53	5	7374	5	GCN1L1	12	120614022	Splice_Site	SNP	T	TCGA-44-2659-01A-01D-0969-08	3009245	120614022	13237873	632	106230											
PIWIL1	9271	broad.mit.edu	37	chr12	130839647	130839647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggagtggcagaaagtaaCtttctcctttggtatctgta	12	6	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130839647	A	A	130839647	1	1	108	0	1	0	0	0	0	0	0	0	12052	580	20	3		3	PIWIL1	12	130839647	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	10225625	130839647	3012248	633	106231											
EP400	57634	broad.mit.edu	37	chr12	132446343	132446343	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgattgaactgtttttcttGcaacactttcaagggaacat	7	7	2	2	rs141437491		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132446343	C	C	132446343	3	2	108	1	0	0	0	0	1	0	0	0	5191	1310	46	4	1181	4	EP400	12	132446343	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1606696	132446343	1405552	634	106232											
NOC4L	79050	broad.mit.edu	37	chr12	132636234	132636234	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggctggagctggggcgggGgtgcctggtgctgtggacgg	24	7	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132636234	C	C	132636234	1	2	108	0	1	0	0	0	0	0	0	0	10610	1247	43	4		4	NOC4L	12	132636234	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	189891	132636234	1215661	635	106233											
P2RX2	22953	broad.mit.edu	37	chr12	133198443	133198443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtgtggcccagccttccCgcccctgcggccttgcccca	11	19	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133198443	A	A	133198443	3	1	108	1	0	0	0	0	1	0	0	0	11434	652	23	1	1417	1	P2RX2	12	133198443	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	562209	133198443	653452	636	106234											
POLE	5426	broad.mit.edu	37	chr12	133256255	133256255	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggctataatgcgaagagatCacgctcattggttcaagaga	11	7	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133256255	A	A	133256255	1	1	108	0	1	0	0	0	0	0	0	0	12291	841	29	3		3	POLE	12	133256255	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	57812	133256255	595640	637	106235											
ATP12A	479	broad.mit.edu	37	chr13	25263595	25263595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggcacagggccctgaGggctacgggtttccacttcc	16	12	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25263595	T	T	25263595	1	4	108	0	1	0	0	0	0	0	0	0	1126	1015	35	2		2	ATP12A	13	25263595	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08		25263595	89906283	638	106236											
CENPJ	55835	broad.mit.edu	37	chr13	25459320	25459320	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcaactaaaggcatcttgtCcaaagagcccttattttaga	8	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25459320	A	A	25459320	1	1	108	0	1	0	0	0	0	0	0	0	3264	870	30	3		3	CENPJ	13	25459320	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	195725	25459320	89710558	639	106237											
GPR12	2835	broad.mit.edu	37	chr13	27333071	27333071	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctgaaagcatatatgacAgggttgatgatggaattgta	11	3	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27333071	G	G	27333071	2	3	108	1	0	0	0	0	0	0	0	1	6700	175	7	5		5	GPR12	13	27333071	Silent	SNP	A	TCGA-44-2659-01A-01D-0969-08	1873751	27333071	87836807	640	106238											
FLT1	2321	broad.mit.edu	37	chr13	28893606	28893606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccgtaagaccacacgtcGctcttggtgctgtagatttt	9	11	1	2	rs116034414	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28893606	T	T	28893606	3	4	108	1	0	0	0	0	1	0	0	0	5999	1078	38	3	804	3	FLT1	13	28893606	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1560535	28893606	86276272	641	106239											
NBEA	26960	broad.mit.edu	37	chr13	35770394	35770394	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagatccagcattgaagaGagaaacacaagctattcttc	7	11	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35770394	T	T	35770394	3	4	108	1	0	0	0	0	1	0	0	0	10281	942	33	3	5443	3	NBEA	13	35770394	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	6876788	35770394	79399484	642	106240											
SOHLH2	54937	broad.mit.edu	37	chr13	36743132	36743132	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagattgtcaaactgcgccCagtaggtggttgagagtgtg	14	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36743132	A	A	36743132	1	1	108	0	1	0	0	0	0	0	0	0	15038	609	21	2		2	SOHLH2	13	36743132	3'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	972738	36743132	78426746	643	106241											
KBTBD6	89890	broad.mit.edu	37	chr13	41705328	41705328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatagggtctcgccccccCaaaatgtagatatagccatt	8	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41705328	A	A	41705328	3	1	108	1	0	0	0	0	1	0	0	0	8067	593	21	2	708	2	KBTBD6	13	41705328	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	4962196	41705328	73464550	644	106242											
NAA16	79612	broad.mit.edu	37	chr13	41897473	41897473	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaaacagttaaaatgtagGattatttttctctctctttt	6	5	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41897473	T	T	41897473	1	4	108	0	1	0	0	0	0	0	0	0	10213	1189	41	3		3	NAA16	13	41897473	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	192145	41897473	73272405	645	106243											
AKAP11	11215	broad.mit.edu	37	chr13	42872545	42872545	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattacaaaaccaaggagcTtttcaggatgcatgaatttc	7	8	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42872545	A	A	42872545	1	1	108	0	1	0	0	0	0	0	0	0	447	1624	56	5		5	AKAP11	13	42872545	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	975072	42872545	72297333	646	106244											
FAM124A	220108	broad.mit.edu	37	chr13	51855350	51855350	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccaccacccccagggtcGgctggccccggggataacga	13	16	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51855350	A	A	51855350	2	1	108	1	0	0	0	0	0	0	0	1	5471	1103	39	4		4	FAM124A	13	51855350	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	8982805	51855350	63314528	647	106245											
OLFM4	10562	broad.mit.edu	37	chr13	53624298	53624298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatagactgtacaacacaCtggatgatttgctattgtat	7	6	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53624298	A	A	53624298	3	1	108	1	0	0	0	0	1	0	0	0	10950	564	20	3	943	3	OLFM4	13	53624298	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1768948	53624298	61545580	648	106246											
PCDH17	27253	broad.mit.edu	37	chr13	58207122	58207122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcggagaacgctgctccgGgcacccgcttccccctcacc	9	20	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207122	T	T	58207122	3	4	108	1	0	0	0	0	1	0	0	0	11606	1232	43	2	444	2	PCDH17	13	58207122	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	4582824	58207122	56962756	649	106247											
PCDH17	27253	broad.mit.edu	37	chr13	58207470	58207470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgctgggtacagtggtcatcGatctgaacgccaccgacgcc	12	14	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207470	T	T	58207470	3	4	108	1	0	0	0	0	1	0	0	0	11606	1058	37	3	792	3	PCDH17	13	58207470	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	348	58207470	56962408	650	106248											
DIAPH3	81624	broad.mit.edu	37	chr13	60490351	60490351	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcatcattctgatttcctCatatggcacccgaaaagagc	6	11	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60490351	A	A	60490351	4	1	108	1	0	0	0	0	0	1	0	0	4560	835	29	3	1438	3	DIAPH3	13	60490351	Nonsense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2282881	60490351	54679527	651	106249											
KLHL1	57626	broad.mit.edu	37	chr13	70549966	70549966	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacAaaataataaagggatttata	3	10	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70549966	T	T	70549966	1	4	108	0	1	0	0	0	0	0	0	0	8436	145	5	5		5	KLHL1	13	70549966	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	10059615	70549966	44619912	652	106250											
PIBF1	10464	broad.mit.edu	37	chr13	73428300	73428300	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctcttagacaggtaagcAtcataaaaatagaaatgtta	7	6	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73428300	G	G	73428300	1	3	108	0	1	0	0	0	0	0	0	0	11974	232	8	5		5	PIBF1	13	73428300	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	2878334	73428300	41741578	653	106251											
COMMD6	170622	broad.mit.edu	37	chr13	76101882	76101882	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtgcaaagtgaaataagCcagacacagaaaggctaata	9	6	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76101882	T	T	76101882	1	4	108	0	1	0	0	0	0	0	0	0	3752	754	26	4		4	COMMD6	13	76101882	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2673582	76101882	39067996	654	106252											
OXGR1	27199	broad.mit.edu	37	chr13	97639260	97639260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaagggtaaaaaacataCgtaaaatgcaaggagtagca	11	4	0	0	rs144457939		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97639260	A	A	97639260	3	1	108	1	0	0	0	0	1	0	0	0	11426	536	19	3	263	3	OXGR1	13	97639260	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	21537378	97639260	17530618	655	106253											
ZIC2	7546	broad.mit.edu	37	chr13	100637593	100637593	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtccatgagtcctcccCgcagggctctgaatcctccc	10	17	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100637593	T	T	100637593	3	4	108	1	0	0	0	0	1	0	0	0	17805	652	23	4	1266	4	ZIC2	13	100637593	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2998333	100637593	14532285	656	106254											
FAM155A	728215	broad.mit.edu	37	chr13	108518829	108518829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagagatgccagagacagtCgccatttctgagccctctcg	11	12	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108518829	A	A	108518829	3	1	108	1	0	0	0	0	1	0	0	0	5511	884	31	3	1272	3	FAM155A	13	108518829	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	7881236	108518829	6651049	657	106255											
RASA3	22821	broad.mit.edu	37	chr13	114778667	114778667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggagagaatggcgggcGcaaagaacctcaggaagatg	18	6	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114778667	T	T	114778667	3	4	108	1	0	0	0	0	1	0	0	0	13170	1087	38	3	1081	3	RASA3	13	114778667	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	6259838	114778667	391211	658	106256											
TEP1	7011	broad.mit.edu	37	chr14	20837789	20837789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggatctgccatccaccCtgggccatctcccggctcct	9	18	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20837789	A	A	20837789	1	1	108	0	1	0	0	0	0	0	0	0	15881	696	24	2		2	TEP1	14	20837789	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08		20837789	86511751	659	106257											
OR6S1	341799	broad.mit.edu	37	chr14	21109284	21109284	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgttggtgcaagccagGcggagcagtgggccactgtc	17	9	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21109284	T	T	21109284	2	4	108	1	0	0	0	0	0	0	0	1	11303	1190	42	3		3	OR6S1	14	21109284	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	271495	21109284	86240256	660	106258											
RNASE2	6036	broad.mit.edu	37	chr14	21424301	21424301	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagaatatttcaaactgcaGgtatgcgcagacaccagcaa	8	10	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21424301	C	C	21424301	3	2	108	1	0	0	0	0	1	0	0	0	13515	1000	35	4	373	4	RNASE2	14	21424301	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	315017	21424301	85925239	661	106259											
MYH6	4624	broad.mit.edu	37	chr14	23863047	23863047	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcatctcctttactttgGcctccagctgaatcttgttt	5	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23863047	A	A	23863047	3	1	108	1	0	0	0	0	1	0	0	0	10132	1203	42	4	3135	4	MYH6	14	23863047	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2438746	23863047	83486493	662	106260											
MYH6	4624	broad.mit.edu	37	chr14	23871768	23871768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccgtcagcttgtagacgCcagctttctcctctgaagtg	9	14	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23871768	A	A	23871768	3	1	108	1	0	0	0	0	1	0	0	0	10132	739	26	3	4885	3	MYH6	14	23871768	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	8721	23871768	83477772	663	106261											
ADCY4	196883	broad.mit.edu	37	chr14	24800386	24800386	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtcttagcccacaggccCctcccctccagccattcttc	7	19	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24800386	G	G	24800386	1	3	108	0	1	0	0	0	0	0	0	0	296	638	22	4		4	ADCY4	14	24800386	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	928618	24800386	82549154	664	106262											
ADCY4	196883	broad.mit.edu	37	chr14	24802138	24802138	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgaggcccagcagcagcgaGaagccgcccagcgcgcacag	15	16	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24802138	C	C	24802138	3	2	108	1	0	0	0	0	1	0	0	0	296	933	33	4	3113	4	ADCY4	14	24802138	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1752	24802138	82547402	665	106263											
KHNYN	23351	broad.mit.edu	37	chr14	24901180	24901180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggagtccctggacactgGatctatgggacccggagatt	14	10	1	1	rs142344659		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24901180	T	T	24901180	3	4	108	1	0	0	0	0	1	0	0	0	8220	1174	41	3	719	3	KHNYN	14	24901180	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	99042	24901180	82448360	666	106264											
GZMB	3002	broad.mit.edu	37	chr14	25100902	25100902	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtaagtttgcagaggccCtaatttctccccagctcagt	9	12	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25100902	T	T	25100902	1	4	108	0	1	0	0	0	0	0	0	0	6981	696	24	4		4	GZMB	14	25100902	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	199722	25100902	82248638	667	106265											
AKAP6	9472	broad.mit.edu	37	chr14	33242894	33242894	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgttgcagtccctctgtcGtgaaatcaagcaacgacgtc	9	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33242894	A	A	33242894	3	1	108	1	0	0	0	0	1	0	0	0	455	1145	40	4	3425	4	AKAP6	14	33242894	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	8141992	33242894	74106646	668	106266											
EGLN3	112399	broad.mit.edu	37	chr14	34395012	34395012	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggagattgttgtcactgaaGaggccatctttggatctcaa	12	7	3	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34395012	A	A	34395012	1	1	108	0	1	0	0	0	0	0	0	0	5010	957	33	4		4	EGLN3	14	34395012	3'UTR	SNP	G	TCGA-44-2659-01A-01D-0969-08	1152118	34395012	72954528	669	106267											
MIPOL1	145282	broad.mit.edu	37	chr14	37777135	37777135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcactttaatatgttcagtGtcatggttgactctaaagac	9	7	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37777135	C	C	37777135	1	2	108	0	1	0	0	0	0	0	0	0	9686	1392	48	4		4	MIPOL1	14	37777135	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3382123	37777135	69572405	670	106268											
LRFN5	145581	broad.mit.edu	37	chr14	42368205	42368205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacttcaacacttaaatGggtatacactttttataaat	3	7	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42368205	T	T	42368205	1	4	108	0	1	0	0	0	0	0	0	0	9028	1363	47	2		2	LRFN5	14	42368205	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4591070	42368205	64981335	671	106269											
MDGA2	161357	broad.mit.edu	37	chr14	47530541	47530541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtacgtcccaaaatccGtgaattttaaatcaatgatg	7	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47530541	T	T	47530541	3	4	108	1	0	0	0	0	1	0	0	0	9500	1145	40	3	1685	3	MDGA2	14	47530541	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	5162336	47530541	59818999	672	106270											
C14orf39	317761	broad.mit.edu	37	chr14	60933825	60933825	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattaacatattttaaagctAggaggcatatttagatacta	6	4	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60933825	G	G	60933825	1	3	108	0	1	0	0	0	0	0	0	0	1785	435	15	5		5	C14orf39	14	60933825	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	13403284	60933825	46415715	673	106271											
PCNX	22990	broad.mit.edu	37	chr14	71498684	71498684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacttcatggctctttctaGgcactgtggttcattgtctc	8	10	5	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71498684	T	T	71498684	1	4	108	0	1	0	0	0	0	0	0	0	11685	1015	35	2		2	PCNX	14	71498684	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	10564859	71498684	35850856	674	106272											
DCAF4	26094	broad.mit.edu	37	chr14	73422416	73422416	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggaaaggtaggggatcaTggactttctcaggccacagg	15	8	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73422416	C	C	73422416	1	2	108	0	1	0	0	0	0	0	0	0	4303	1479	51	5		5	DCAF4	14	73422416	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	1923732	73422416	33927124	675	106273											
ABCD4	5826	broad.mit.edu	37	chr14	74762796	74762796	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctgtccaatctgagtggCccaatgggccctctgctcct	9	17	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74762796	A	A	74762796	1	1	108	0	1	0	0	0	0	0	0	0	63	754	26	3		3	ABCD4	14	74762796	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1340380	74762796	32586744	676	106274											
DIO2	1734	broad.mit.edu	37	chr14	80672104	80672104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaaaattaggaaagttAccaaattcgtaatgctcttt	5	5	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80672104	T	T	80672104	1	4	108	0	1	0	0	0	0	0	0	0	4565	406	14	5		5	DIO2	14	80672104	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	5909308	80672104	26677436	677	106275											
SERPINA3	12	broad.mit.edu	37	chr14	95088804	95088804	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgtcagggatcacaggGgccaggaacctagcagtctc	13	12	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95088804	T	T	95088804	2	4	108	1	0	0	0	0	0	0	0	1	14203	1219	43	2		2	SERPINA3	14	95088804	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	14416700	95088804	12260736	678	106276											
C14orf49	161176	broad.mit.edu	37	chr14	95884079	95884079	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctttgccctgcccctgtttCcagtttccctggcgagcatc	8	16	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95884079	G	G	95884079	1	3	108	0	1	0	0	0	0	0	0	0	1789	870	30	4		4	C14orf49	14	95884079	3'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	795275	95884079	11465461	679	106277											
AHNAK2	113146	broad.mit.edu	37	chr14	105407380	105407380	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcaagctcaggggccaagGcagctctgggaacagtcacc	14	12	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105407380	C	C	105407380	3	2	108	1	0	0	0	0	1	0	0	0	415	1203	42	4	2983	4	AHNAK2	14	105407380	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	9523301	105407380	1942160	680	106278											
POTEB	339010	broad.mit.edu	37	chr15	22074789	22074789	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagcttatggacttacactCacagaaagtaaataaaattt	6	6	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22074789	A	A	22074789	1	1	108	0	1	0	0	0	0	0	0	0	12357	841	29	3		3	POTEB	15	22074789	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08		22074789	80456603	681	106279											
C15orf2	23742	broad.mit.edu	37	chr15	24922175	24922175	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcttggaggataaaacagaGaccatgacaaacagcagcat	9	8	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24922175	T	T	24922175	3	4	108	1	0	0	0	0	1	0	0	0	1797	933	33	3	1163	3	C15orf2	15	24922175	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	2847386	24922175	77609217	682	106280											
TGM5	9333	broad.mit.edu	37	chr15	43552761	43552761	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggagctctggaggtctgtGagggccacttctagccctgc	14	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43552761	A	A	43552761	2	1	108	1	0	0	0	0	0	0	0	1	15956	1277	45	4		4	TGM5	15	43552761	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	18630586	43552761	58978631	683	106281											
SEMA6D	80031	broad.mit.edu	37	chr15	48064068	48064069	+	3'UTR	DNP	CT	AC	AC													gggtaccttaaaacaagagaCtcgcttgtattttaagagaa							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	48064069	AC	AC	48064068	1	1	108	0	1	0	0	0	0	0	0	0	14155	580	20	3		3	SEMA6D	15	48064068	3'UTR	DNP	CT	TCGA-44-2659-01A-01D-0969-08	4511307	48064068	54467324	684	106282											
SCG3	29106	broad.mit.edu	37	chr15	51980625	51980625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttggtaggaaataaacCaaattcctagtgcagtttag	8	6	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51980625	A	A	51980625	1	1	108	0	1	0	0	0	0	0	0	0	14004	609	21	2		2	SCG3	15	51980625	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3916557	51980625	50550767	685	106283											
ALDH1A2	8854	broad.mit.edu	37	chr15	58256170	58256177	+	Frame_Shift_Del	DEL	ATAGATGG	-	-													cttcttctcacaaactcctcAtagatggactcctccacgaa							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58256177	-	-	58256170	7	5	108	1	0	1	0	1	0	0	0	0	491	224	8	0	577	0	ALDH1A2	15	58256170	Frame_Shift_Del	DEL	ATAGATGG	TCGA-44-2659-01A-01D-0969-08	6275545	58256170	44275222	686	106284											
ZNF609	23060	broad.mit.edu	37	chr15	64821522	64821522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagatgttgacccttttgGctcccccctgcaagtgagcc	10	14	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64821522	T	T	64821522	1	4	108	0	1	0	0	0	0	0	0	0	18162	1218	42	3		3	ZNF609	15	64821522	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	6565352	64821522	37709870	687	106285											
MAP2K5	5607	broad.mit.edu	37	chr15	67923355	67923355	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagatattgtcaaagaggaGatgaaatggcttaaggttta	11	3	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67923355	T	T	67923355	1	4	108	0	1	0	0	0	0	0	0	0	9332	957	33	3		3	MAP2K5	15	67923355	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	3101833	67923355	34608037	688	106286											
NEO1	4756	broad.mit.edu	37	chr15	73566113	73566113	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaggcaaaaggaaaagcAggagtgagatttcttttccc	11	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73566113	T	T	73566113	1	4	108	0	1	0	0	0	0	0	0	0	10431	203	7	5		5	NEO1	15	73566113	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	5642758	73566113	28965279	689	106287											
POLG	5428	broad.mit.edu	37	chr15	89862224	89862224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcccagcaccggggtacGtggtatgtcagacgtagcaa	14	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89862224	A	A	89862224	3	1	108	1	0	0	0	0	1	0	0	0	12295	1145	40	4	524	4	POLG	15	89862224	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	16296111	89862224	12669168	690	106288											
SPATA8	145946	broad.mit.edu	37	chr15	97327313	97327313	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcccaaaatccaactctatGaggctctcactcaatgtggg	7	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97327313	T	T	97327313	1	4	108	0	1	0	0	0	0	0	0	0	15131	1305	45	3		3	SPATA8	15	97327313	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	7465089	97327313	5204079	691	106289											
IGF1R	3480	broad.mit.edu	37	chr15	99473428	99473428	+	Intron	DEL	G	-	-													atacaggaatgtatggaggtGgggttttgttaacgtgaatt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99473428	-	-	99473428	6	5	108	0	1	1	0	1	0	0	0	0	7641	1363	47	0		0	IGF1R	15	99473428	Intron	DEL	G	TCGA-44-2659-01A-01D-0969-08	2146115	99473428	3057964	692	106290											
LINS1	55180	broad.mit.edu	37	chr15	101110442	101110442	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttttaaatctatgcatcaCttcttaaaagaaaaaatttc	2	7	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101110442	G	G	101110442	1	3	108	0	1	0	0	0	0	0	0	0	8891	580	20	4		4	LINS1	15	101110442	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1637014	101110442	1420950	693	106291											
LRRK1	79705	broad.mit.edu	37	chr15	101529030	101529031	+	Intron	DNP	CA	TT	TT													tcaagtcaggtgggtttcccCactaccctgagtcaaccctg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	101529031	TT	TT	101529030	1	4	108	0	1	0	0	0	0	0	0	0	9119	609	21	4		4	LRRK1	15	101529030	Intron	DNP	CA	TCGA-44-2659-01A-01D-0969-08	418588	101529030	1002362	694	106292											
LRRK1	79705	broad.mit.edu	37	chr15	101606440	101606440	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgaggtgagggcaccatccAgggcacgcccactgctcctg	13	16	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101606440	C	C	101606440	1	2	108	0	1	0	0	0	0	0	0	0	9119	203	7	5		5	LRRK1	15	101606440	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	77410	101606440	924952	695	106293											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1810345	1810345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcacgtacctgtatgccgCgcccgtggcactcccatctt	8	17	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1810345	T	T	1810345	1	4	108	0	1	0	0	0	0	0	0	0	9378	783	27	4		4	MAPK8IP3	16	1810345	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08		1810345	88544408	696	106294											
ZG16B	124220	broad.mit.edu	37	chr16	2882139	2882139	+	Frame_Shift_Del	DEL	A	-	-													gttaatctcacatactcagcAaactcacccgtgggtcgcta							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2882139	-	-	2882139	7	5	108	1	0	1	0	1	0	0	0	0	17798	117	5	0	620	0	ZG16B	16	2882139	Frame_Shift_Del	DEL	A	TCGA-44-2659-01A-01D-0969-08	1071794	2882139	87472614	697	106295											
MEFV	4210	broad.mit.edu	37	chr16	3293233	3293233	+	Frame_Shift_Del	DEL	G	-	-													agggctgaagataggttgaaGgggcccagagaaagagcagc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3293233	-	-	3293233	7	5	108	1	0	1	0	1	0	0	0	0	9552	1000	35	0	95	0	MEFV	16	3293233	Frame_Shift_Del	DEL	G	TCGA-44-2659-01A-01D-0969-08	411094	3293233	87061520	698	106296											
NLRC3	197358	broad.mit.edu	37	chr16	3615000	3615000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccgtaccgtggccctggCcggcctccctgcccgtccgc	12	21	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3615000	A	A	3615000	3	1	108	1	0	0	0	0	1	0	0	0	10563	739	26	3	3228	3	NLRC3	16	3615000	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	321767	3615000	86739753	699	106297											
A2BP1	54715	broad.mit.edu	37	chr16	7743543	7743543	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaggctctgccatataAgacgacattaggcattttgc	9	10	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7743543	T	T	7743543	1	4	108	0	1	0	0	0	0	0	0	0	3	87	3	5		5	A2BP1	16	7743543	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	4128543	7743543	82611210	700	106298											
NOMO1	23420	broad.mit.edu	37	chr16	14989245	14989245	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtttgaactgaaacccaCccattagcacgtggcagctg	9	13	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14989245	T	T	14989245	1	4	108	0	1	0	0	0	0	0	0	0	10626	522	18	4		4	NOMO1	16	14989245	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	7245702	14989245	75365508	701	106299											
SMG1	23049	broad.mit.edu	37	chr16	18844354	18844354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagattccactagagtctgCaggggaacgccatcggtggt	14	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18844354	A	A	18844354	2	1	108	1	0	0	0	0	0	0	0	1	14909	697	25	3		3	SMG1	16	18844354	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	3855109	18844354	71510399	702	106300											
GPRC5B	51704	broad.mit.edu	37	chr16	19883304	19883304	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagtggatctcagggatGgcgtggaagatgacgaagac	17	6	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19883304	T	T	19883304	2	4	108	1	0	0	0	0	0	0	0	1	6791	1335	47	2		2	GPRC5B	16	19883304	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1038950	19883304	70471449	703	106301											
DNAH3	55567	broad.mit.edu	37	chr16	20976235	20976235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagtcagattagtatagcGgatccccagctgtcgggcag	12	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20976235	A	A	20976235	3	1	108	1	0	0	0	0	1	0	0	0	4643	1116	39	4	3418	4	DNAH3	16	20976235	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1092931	20976235	69378518	704	106302											
UQCRC2	7385	broad.mit.edu	37	chr16	21991533	21991533	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcagaggatccagattgcAcaaccggatccagaggcctt	11	11	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21991533	T	T	21991533	1	4	108	0	1	0	0	0	0	0	0	0	17146	174	6	5		5	UQCRC2	16	21991533	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	1015298	21991533	68363220	705	106303											
PRKCB	5579	broad.mit.edu	37	chr16	24166177	24166178	+	Missense_Mutation	DNP	TG	AT	AT													ccactcctgcttccagaccaTggtaacttgtcccatggccc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	24166178	AT	AT	24166177	3	1	108	1	0	0	0	0	1	0	0	0	12614	1478	51	5	1276	5	PRKCB	16	24166177	Missense_Mutation	DNP	TG	TCGA-44-2659-01A-01D-0969-08	2174644	24166177	66188576	706	106304											
ITGAL	3683	broad.mit.edu	37	chr16	30492758	30492758	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttcttccttccttttctAgtttgctgctgttcagtttt	5	10	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30492758	G	G	30492758	5	3	108	1	0	0	0	0	0	0	1	0	7956	434	15	5	601	5	ITGAL	16	30492758	Splice_Site	SNP	A	TCGA-44-2659-01A-01D-0969-08	6326581	30492758	59861995	707	106305											
ZNF423	23090	broad.mit.edu	37	chr16	49559249	49559249	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgttcatctctctcccctGaggggcacaagctgggtacc	11	13	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49559249	T	T	49559249	1	4	108	0	1	0	0	0	0	0	0	0	18025	1305	45	3		3	ZNF423	16	49559249	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	19066491	49559249	40795504	708	106306											
FTO	79068	broad.mit.edu	37	chr16	54145842	54145842	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctagaaggagcacaagtcTcaggcggaggagaaaaagag	14	8	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54145842	A	A	54145842	1	1	108	0	1	0	0	0	0	0	0	0	6146	1566	54	5		5	FTO	16	54145842	3'UTR	SNP	T	TCGA-44-2659-01A-01D-0969-08	4586593	54145842	36208911	709	106307											
FTO	79068	broad.mit.edu	37	chr16	54145867	54145867	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaggagaaaaagagatcgGcttttctcctccaacgttgt	11	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54145867	T	T	54145867	1	4	108	0	1	0	0	0	0	0	0	0	6146	1218	42	3		3	FTO	16	54145867	3'UTR	SNP	G	TCGA-44-2659-01A-01D-0969-08	25	54145867	36208886	710	106308											
FHOD1	29109	broad.mit.edu	37	chr16	67272056	67272056	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacagggatgggcagagTcagcgagggtcgctggagca	19	7	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67272056	A	A	67272056	1	1	108	0	1	0	0	0	0	0	0	0	5939	1682	58	5		5	FHOD1	16	67272056	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	13126189	67272056	23082697	711	106309											
FAM65A	79567	broad.mit.edu	37	chr16	67573489	67573489	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaagggctagaccagcAggaaggggcgtcagttgcta	14	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67573489	T	T	67573489	1	4	108	0	1	0	0	0	0	0	0	0	5650	203	7	5		5	FAM65A	16	67573489	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	301433	67573489	22781264	712	106310											
VAT1L	57687	broad.mit.edu	37	chr16	77918709	77918709	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggaggaggtaagaatgGtgcttttcttctgcaaataa	11	6	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77918709	A	A	77918709	1	1	108	0	1	0	0	0	0	0	0	0	17257	1276	44	4		4	VAT1L	16	77918709	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	10345220	77918709	12436044	713	106311											
NECAB2	54550	broad.mit.edu	37	chr16	84034541	84034541	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccgaggcatctacccgctGgcatgcttgcgtcagtaaac	10	14	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84034541	A	A	84034541	1	1	108	0	1	0	0	0	0	0	0	0	10400	1363	47	4		4	NECAB2	16	84034541	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	6115832	84034541	6320212	714	106312											
TAF1C	9013	broad.mit.edu	37	chr16	84214845	84214845	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtcccaggccggtgacgcTgtcctcgcccaggccgcagc	13	18	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84214845	A	A	84214845	1	1	108	0	1	0	0	0	0	0	0	0	15640	1595	55	5		5	TAF1C	16	84214845	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	180304	84214845	6139908	715	106313											
KLHL36	79786	broad.mit.edu	37	chr16	84693202	84693202	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggtgaaacctcgggggctCagagctcccacctgaagaag	13	11	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84693202	T	T	84693202	1	4	108	0	1	0	0	0	0	0	0	0	8460	841	29	4		4	KLHL36	16	84693202	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	478357	84693202	5661551	716	106314											
DPEP1	1800	broad.mit.edu	37	chr16	89702265	89702266	+	Intron	INS	-	A	A													ccaggagctcggaagcccccINSaggtcccagtggccgccctg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89702266	A	A	89702265	6	5	108	0	1	1	1	0	0	0	0	0	4753	609	21	0		0	DPEP1	16	89702265	Intron	INS	-	TCGA-44-2659-01A-01D-0969-08	5009063	89702265	652488	717	106315											
SPIRE2	84501	broad.mit.edu	37	chr16	89920849	89920849	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctctgcctggggggccgtgGagcttcacctggggctgaga	17	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89920849	T	T	89920849	1	4	108	0	1	0	0	0	0	0	0	0	15190	1189	41	3		3	SPIRE2	16	89920849	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	218584	89920849	433904	718	106316											
MINK1	50488	broad.mit.edu	37	chr17	4794819	4794819	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgatcccagtccctgcaGgaccagcccacccgaaacct	7	21	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4794819	A	A	4794819	2	1	108	1	0	0	0	0	0	0	0	1	9680	991	35	4		4	MINK1	17	4794819	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08		4794819	76400391	719	106317											
NLRP1	22861	broad.mit.edu	37	chr17	5462598	5462598	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacctctacccaacgtGcctgctccaaagaaggaatg	9	14	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5462598	A	A	5462598	3	1	108	1	0	0	0	0	1	0	0	0	10566	1319	46	4	3134	4	NLRP1	17	5462598	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	667779	5462598	75732612	720	106318											
TP53	7157	broad.mit.edu	37	chr17	7578556	7578556	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgagggcaggggagtacTgtaggaagaggaaggagaca	19	3	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578556	A	A	7578556	5	1	108	1	0	0	0	0	0	0	1	0	16505	1594	55	5	924	5	TP53	17	7578556	Splice_Site	SNP	T	TCGA-44-2659-01A-01D-0969-08	2115958	7578556	73616654	721	106319											
WDR16	146845	broad.mit.edu	37	chr17	9538670	9538670	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttggaatcttttcctatCccttcagaagtcccaagtgt	6	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9538670	A	A	9538670	1	1	108	0	1	0	0	0	0	0	0	0	17403	870	30	3		3	WDR16	17	9538670	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1960114	9538670	71656540	722	106320											
GLP2R	9340	broad.mit.edu	37	chr17	9757860	9757860	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctgatgtacaccgtgGgatactccttctctcttatc	8	12	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9757860	T	T	9757860	4	4	108	1	0	0	0	0	0	1	0	0	6517	1233	43	2	571	2	GLP2R	17	9757860	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	219190	9757860	71437350	723	106321											
MYH13	8735	broad.mit.edu	37	chr17	10204782	10204782	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccacatctcaggtacCtgcccttatctggcctccca	7	18	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10204782	A	A	10204782	1	1	108	0	1	0	0	0	0	0	0	0	10126	696	24	2		2	MYH13	17	10204782	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	446922	10204782	70990428	724	106322											
MYH8	4626	broad.mit.edu	37	chr17	10322326	10322326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggttcatagggaagacttGgtcttccctgacagttagag	13	7	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10322326	T	T	10322326	3	4	108	1	0	0	0	0	1	0	0	0	10135	1357	47	2	5729	2	MYH8	17	10322326	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	117544	10322326	70872884	725	106323											
MYH4	4622	broad.mit.edu	37	chr17	10350965	10350965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaaactctgtcctgggCcttccagaattaagctcttt	7	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10350965	A	A	10350965	1	1	108	0	1	0	0	0	0	0	0	0	10131	754	26	3		3	MYH4	17	10350965	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	28639	10350965	70844245	726	106324											
DNAH9	1770	broad.mit.edu	37	chr17	11513660	11513660	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccagggttattttcacgCctcagggtttttgtttttgt	9	9	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11513660	G	G	11513660	1	3	108	0	1	0	0	0	0	0	0	0	4648	754	26	4		4	DNAH9	17	11513660	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1162695	11513660	69681550	727	106325											
DNAH9	1770	broad.mit.edu	37	chr17	11784402	11784402	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaaaagaatcccagggctCatcctagacataggaggaat	9	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11784402	A	A	11784402	1	1	108	0	1	0	0	0	0	0	0	0	4648	841	29	3		3	DNAH9	17	11784402	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	270742	11784402	69410808	728	106326											
TLCD1	116238	broad.mit.edu	37	chr17	27051724	27051724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggcctgaggggccaggCggaagagaaagtacatgacc	17	8	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27051724	A	A	27051724	3	1	108	1	0	0	0	0	1	0	0	0	16060	768	27	3	199	3	TLCD1	17	27051724	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	15267322	27051724	54143486	729	106327											
CCDC55	84081	broad.mit.edu	37	chr17	28444213	28444213	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtttctccccgcttggatGctctcaggggcagtgtgaag	14	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28444213	A	A	28444213	1	1	108	0	1	0	0	0	0	0	0	0	2853	1334	46	4		4	CCDC55	17	28444213	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1392489	28444213	52750997	730	106328											
GOSR1	9527	broad.mit.edu	37	chr17	28838063	28838063	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttcgtttatcctccttaAagatgaaatttttactatgt	5	6	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28838063	C	C	28838063	1	2	108	0	1	0	0	0	0	0	0	0	6641	29	1	5		5	GOSR1	17	28838063	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	393850	28838063	52357147	731	106329											
NF1	4763	broad.mit.edu	37	chr17	29528379	29528379	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggcttcatttgtattactGagtatttttctcatagaaat	6	5	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29528379	T	T	29528379	1	4	108	0	1	0	0	0	0	0	0	0	10451	1305	45	3		3	NF1	17	29528379	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	690316	29528379	51666831	732	106330											
EVI2A	2123	broad.mit.edu	37	chr17	29645450	29645450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttgttcttttccaagtGtctgattcagcgggccatag	10	8	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29645450	T	T	29645450	3	4	108	1	0	0	0	0	1	0	0	0	5329	1368	48	3	132	3	EVI2A	17	29645450	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	117071	29645450	51549760	733	106331											
NF1	4763	broad.mit.edu	37	chr17	29657518	29657518	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggatttagcaaatctagTaagtaatgataattttcttt	6	4	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29657518	A	A	29657518	5	1	108	1	0	0	0	0	0	0	1	0	10451	1652	57	5	6029	5	NF1	17	29657518	Splice_Site	SNP	T	TCGA-44-2659-01A-01D-0969-08	12068	29657518	51537692	734	106332											
GAS2L2	246176	broad.mit.edu	37	chr17	34073054	34073054	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagaacggacagactctgGctccctgaactggaagaacg	13	10	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34073054	C	C	34073054	3	2	108	1	0	0	0	0	1	0	0	0	6309	1203	42	4	1184	4	GAS2L2	17	34073054	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	4415536	34073054	47122156	735	106333											
DHRS11	79154	broad.mit.edu	37	chr17	34951468	34951468	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccctacagatgtgacctatCaaatgaagaggacatcctct	7	12	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34951468	T	T	34951468	3	4	108	1	0	0	0	0	1	0	0	0	4527	838	29	4	221	4	DHRS11	17	34951468	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	878414	34951468	46243742	736	106334											
PLXDC1	57125	broad.mit.edu	37	chr17	37264449	37264449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcaggggcgccacataCtgagtagctgtgagcatccg	13	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37264449	A	A	37264449	3	1	108	1	0	0	0	0	1	0	0	0	12212	564	20	3	1023	3	PLXDC1	17	37264449	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2312981	37264449	43930761	737	106335											
CASC3	22794	broad.mit.edu	37	chr17	38318060	38318060	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaaagtggagctgaaatcaGaagctaatgatgctgttaat	10	6	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38318060	A	A	38318060	3	1	108	1	0	0	0	0	1	0	0	0	2687	943	33	4	366	4	CASC3	17	38318060	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1053611	38318060	42877150	738	106336											
KRT28	162605	broad.mit.edu	37	chr17	38950232	38950232	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggccccgatctgagcctGgatctgcgccagctgcgtac	13	15	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38950232	A	A	38950232	4	1	108	1	0	0	0	0	0	1	0	0	8536	1357	47	4	361	4	KRT28	17	38950232	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	632172	38950232	42244978	739	106337											
KRT28	162605	broad.mit.edu	37	chr17	38954299	38954299	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgttctgagcgtgtgataTgtattaattcattgaagcct	9	6	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38954299	A	A	38954299	1	1	108	0	1	0	0	0	0	0	0	0	8536	1479	51	5		5	KRT28	17	38954299	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	4067	38954299	42240911	740	106338											
KRTAP3-1	83896	broad.mit.edu	37	chr17	39165133	39165133	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacagttgttgagcagccagCaagttggcacataggtatca	12	8	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39165133	G	G	39165133	3	3	108	1	0	0	0	0	1	0	0	0	8617	710	25	4	106	4	KRTAP3-1	17	39165133	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	210834	39165133	42030077	741	106339											
KCNH4	23415	broad.mit.edu	37	chr17	40327779	40327779	+	Intron	DEL	G	-	-													gggtgcaagaggctattactGgggggccttggcaaaggggt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40327779	-	-	40327779	6	5	108	0	1	1	0	1	0	0	0	0	8104	1363	47	0		0	KCNH4	17	40327779	Intron	DEL	G	TCGA-44-2659-01A-01D-0969-08	1162646	40327779	40867431	742	106340											
KCNH4	23415	broad.mit.edu	37	chr17	40327894	40327894	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctggctggtccttagggagGataggttacaaggctgaagg	16	6	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40327894	C	C	40327894	1	2	108	0	1	0	0	0	0	0	0	0	8104	1189	41	4		4	KCNH4	17	40327894	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	115	40327894	40867316	743	106341											
LSM12	124801	broad.mit.edu	37	chr17	42114710	42114710	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtagcacaatgtcctggtCtggtgctaaagactgaaggc	12	9	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42114710	A	A	42114710	1	1	108	0	1	0	0	0	0	0	0	0	9140	928	32	3		3	LSM12	17	42114710	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1786816	42114710	39080500	744	106342											
SLC4A1	6521	broad.mit.edu	37	chr17	42340309	42340309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaccgcgggtccctgcagCagagggcacaggctgagtgg	17	13	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42340309	A	A	42340309	1	1	108	0	1	0	0	0	0	0	0	0	14764	725	25	3		3	SLC4A1	17	42340309	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	225599	42340309	38854901	745	106343											
EFTUD2	9343	broad.mit.edu	37	chr17	42940928	42940928	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggatggggaggcaagggtGggaaagtgggcattactcct	20	5	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42940928	A	A	42940928	1	1	108	0	1	0	0	0	0	0	0	0	5001	1363	47	4		4	EFTUD2	17	42940928	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	600619	42940928	38254282	746	106344											
GFAP	2670	broad.mit.edu	37	chr17	42988648	42988648	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctgtaggtggcgatctcGatgtccagggccagcttgac	13	11	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42988648	T	T	42988648	2	4	108	1	0	0	0	0	0	0	0	1	6401	1048	37	3		3	GFAP	17	42988648	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	47720	42988648	38206562	747	106345											
GFAP	2670	broad.mit.edu	37	chr17	42989121	42989121	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttcgtgcttggcctggcgGagcagctccgcgttgcgggc	17	13	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42989121	C	C	42989121	2	2	108	1	0	0	0	0	0	0	0	1	6401	1161	41	4		4	GFAP	17	42989121	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	473	42989121	38206089	748	106346											
CRHR1	1394	broad.mit.edu	37	chr17	43893771	43893776	+	Intron	DEL	CTGCCT	-	-													aactctggaatgtcctctgcCtgcctggggccttggccgga					rs10585044		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43893776	-	-	43893771	6	5	108	0	1	1	0	1	0	0	0	0	3903	696	24	0		0	CRHR1	17	43893771	Intron	DEL	CTGCCT	TCGA-44-2659-01A-01D-0969-08	904650	43893771	37301439	749	106347											
ITGB3	3690	broad.mit.edu	37	chr17	45367167	45367167	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgccttcgggcttcctgGagtgggccctgtgatggtgg	17	10	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45367167	A	A	45367167	1	1	108	0	1	0	0	0	0	0	0	0	7965	1189	41	4		4	ITGB3	17	45367167	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1473396	45367167	35828043	750	106348											
HOXB8	3218	broad.mit.edu	37	chr17	46690585	46690585	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcttgtcgcccttctgCgcgtcgccctcgtccgccgc	9	19	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46690585	A	A	46690585	2	1	108	1	0	0	0	0	0	0	0	1	7374	755	27	3		3	HOXB8	17	46690585	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	1323418	46690585	34504625	751	106349											
OR4D2	124538	broad.mit.edu	37	chr17	56247058	56247058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggtatcagactttgtcttCctggggctctcgcagactcg	12	11	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247058	A	A	56247058	3	1	108	1	0	0	0	0	1	0	0	0	11150	854	30	3	44	3	OR4D2	17	56247058	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	9556473	56247058	24948152	752	106350											
DDX42	11325	broad.mit.edu	37	chr17	61886919	61886919	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattttgttgatcttataGggtcgactgatagatcatgt	9	5	3	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61886919	T	T	61886919	5	4	108	1	0	0	0	0	0	0	1	0	4395	1014	35	2	1190	2	DDX42	17	61886919	Splice_Site	SNP	G	TCGA-44-2659-01A-01D-0969-08	5639861	61886919	19308291	753	106351											
SMARCD2	6603	broad.mit.edu	37	chr17	61914346	61914346	+	Frame_Shift_Del	DEL	T	-	-													gagcaatggtctggtccagcTtccgctcaaaagccaagaga							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61914346	-	-	61914346	7	5	108	1	0	1	0	1	0	0	0	0	14892	1609	56	0	1132	0	SMARCD2	17	61914346	Frame_Shift_Del	DEL	T	TCGA-44-2659-01A-01D-0969-08	27427	61914346	19280864	754	106352											
TMC8	147138	broad.mit.edu	37	chr17	76135131	76135131	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatacagcagtgtgcagtGagaagaccccagtaccgcgt	12	11	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76135131	T	T	76135131	1	4	108	0	1	0	0	0	0	0	0	0	16114	1305	45	3		3	TMC8	17	76135131	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	14220785	76135131	5060079	755	106353											
DNAH17	8632	broad.mit.edu	37	chr17	76430021	76430024	+	Intron	DEL	GGAG	-	-													ggaaggaaggagggagggaaGgagggagggaaggagggagg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76430024	-	-	76430021	6	5	108	0	1	1	0	1	0	0	0	0	4641	1015	35	0		0	DNAH17	17	76430021	Intron	DEL	GGAG	TCGA-44-2659-01A-01D-0969-08	294890	76430021	4765189	756	106354											
C1QTNF1	114897	broad.mit.edu	37	chr17	77044101	77044101	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcgaacgtgagaacgccatCttcagcgaggagctggacac	14	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77044101	A	A	77044101	2	1	108	1	0	0	0	0	0	0	0	1	1982	903	32	3		3	C1QTNF1	17	77044101	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	614080	77044101	4151109	757	106355											
BAHCC1	57597	broad.mit.edu	37	chr17	79419955	79419955	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggggagcagggtccaggcTcccctgaggcttccaggctg	16	13	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79419955	C	C	79419955	1	2	108	0	1	0	0	0	0	0	0	0	1301	1566	54	5		5	BAHCC1	17	79419955	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	2375854	79419955	1775255	758	106356											
TBCD	6904	broad.mit.edu	37	chr17	80726316	80726316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgggaaacccgctacatGcttttgctctggctctccgt	10	13	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80726316	T	T	80726316	3	4	108	1	0	0	0	0	1	0	0	0	15755	1319	46	3	474	3	TBCD	17	80726316	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1306361	80726316	468894	759	106357											
CDH2	1000	broad.mit.edu	37	chr18	25568698	25568698	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacatattttacaggtttaGttccaaatgcaactggctca	6	8	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25568698	C	C	25568698	1	2	108	0	1	0	0	0	0	0	0	0	3135	1044	36	4		4	CDH2	18	25568698	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08		25568698	52508550	760	106358											
CDH2	1000	broad.mit.edu	37	chr18	25583177	25583177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatggttacccttcattcCagggaccccaaaatagaagg	9	10	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25583177	A	A	25583177	1	1	108	0	1	0	0	0	0	0	0	0	3135	609	21	2		2	CDH2	18	25583177	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	14479	25583177	52494071	761	106359											
ASXL3	80816	broad.mit.edu	37	chr18	31319419	31319419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcagaaatatctccaatatCcacttcacctgaaatatcag	4	11	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31319419	A	A	31319419	3	1	108	1	0	0	0	0	1	0	0	0	1072	855	30	3	2093	3	ASXL3	18	31319419	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	5736242	31319419	46757829	762	106360											
DTNA	1837	broad.mit.edu	37	chr18	32391882	32391882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaaaacagtggagaatGttcatgtgatgaataatatc	9	4	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32391882	T	T	32391882	1	4	108	0	1	0	0	0	0	0	0	0	4828	1392	48	3		3	DTNA	18	32391882	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1072463	32391882	45685366	763	106361											
MOCOS	55034	broad.mit.edu	37	chr18	33793329	33793329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttacattaaatccgcagGtggacaaaatggccagtctt	9	8	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33793329	T	T	33793329	3	4	108	1	0	0	0	0	1	0	0	0	9783	1275	44	3	1245	3	MOCOS	18	33793329	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1401447	33793329	44283919	764	106362											
SETBP1	26040	broad.mit.edu	37	chr18	42531706	42531706	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcactgaaaccaatttttcaGagttgaaaactatgccaaat	6	8	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42531706	T	T	42531706	4	4	108	1	0	0	0	0	0	1	0	0	14242	943	33	3	2604	3	SETBP1	18	42531706	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	8738377	42531706	35545542	765	106363											
SLC14A2	8170	broad.mit.edu	37	chr18	43249375	43249375	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgtacctggcagccacggGccactacaaccttttcttcc	7	15	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43249375	C	C	43249375	3	2	108	1	0	0	0	0	1	0	0	0	14510	1203	42	4	2199	4	SLC14A2	18	43249375	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	717669	43249375	34827873	766	106364											
DYM	54808	broad.mit.edu	37	chr18	46858254	46858254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgctactcctgatgcaagtCcataaagcagtcctccccca	6	15	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46858254	A	A	46858254	3	1	108	1	0	0	0	0	1	0	0	0	4880	855	30	3	1306	3	DYM	18	46858254	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	3608879	46858254	31218994	767	106365											
C18orf32	497661	broad.mit.edu	37	chr18	47015750	47015750	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttcttctgggcaacctcCtcttctggtttaggaacaat	7	10	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47015750	A	A	47015750	1	1	108	0	1	0	0	0	0	0	0	0	1919	680	24	2		2	C18orf32	18	47015750	5'Flank	SNP	C	TCGA-44-2659-01A-01D-0969-08	157496	47015750	31061498	768	106366											
MYO5B	4645	broad.mit.edu	37	chr18	47463659	47463659	+	Frame_Shift_Del	DEL	T	-	-													ctccttgttggagactttcaTggggggtctggcagaacgga							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47463659	-	-	47463659	7	5	108	1	0	1	0	1	0	0	0	0	10173	1464	51	0	3789	0	MYO5B	18	47463659	Frame_Shift_Del	DEL	T	TCGA-44-2659-01A-01D-0969-08	447909	47463659	30613589	769	106367											
WDR7	23335	broad.mit.edu	37	chr18	54353141	54353141	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaatatttagaaaaagcgtAttatgttcgtaacctgggct	8	5	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54353141	G	G	54353141	1	3	108	0	1	0	0	0	0	0	0	0	17447	464	16	5		5	WDR7	18	54353141	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	6889482	54353141	23724107	770	106368											
WDR7	23335	broad.mit.edu	37	chr18	54446658	54446658	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatatattacatttttgAcaggttggagtcagttagct	9	4	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54446658	T	T	54446658	1	4	108	0	1	0	0	0	0	0	0	0	17447	290	10	5		5	WDR7	18	54446658	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	93517	54446658	23630590	771	106369											
WDR7	23335	broad.mit.edu	37	chr18	54694337	54694337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcagcccgcgtcccccGgctcccacaatgccctcaag	9	20	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54694337	T	T	54694337	3	4	108	1	0	0	0	0	1	0	0	0	17447	1116	39	1	4478	1	WDR7	18	54694337	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	247679	54694337	23382911	772	106370											
ATP8B1	5205	broad.mit.edu	37	chr18	55359150	55359150	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccatcatagaggtaccaaGaggaattgcccacctgtgct	9	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55359150	A	A	55359150	3	1	108	1	0	0	0	0	1	0	0	0	1198	942	33	4	2714	4	ATP8B1	18	55359150	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	664813	55359150	22718098	773	106371											
ALPK2	115701	broad.mit.edu	37	chr18	56202436	56202436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttaggggctttctctaaCtcacgttctcctgaaataaa	6	9	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56202436	A	A	56202436	3	1	108	1	0	0	0	0	1	0	0	0	545	564	20	3	1565	3	ALPK2	18	56202436	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	843286	56202436	21874812	774	106372											
LMAN1	3998	broad.mit.edu	37	chr18	57013089	57013089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaacacagagactcaagCgtccatgatcaacagcctca	8	13	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57013089	A	A	57013089	1	1	108	0	1	0	0	0	0	0	0	0	8910	783	27	3		3	LMAN1	18	57013089	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	810653	57013089	21064159	775	106373											
KIAA1468	57614	broad.mit.edu	37	chr18	59895373	59895373	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctacagttttaggtatatGaagcatcagtgaatattgca	9	5	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59895373	A	A	59895373	1	1	108	0	1	0	0	0	0	0	0	0	8306	1305	45	4		4	KIAA1468	18	59895373	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2882284	59895373	18181875	776	106374											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60015426	60015426	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgcagatcgctcctccatGtaccagtgagaagcattatg	9	10	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60015426	A	A	60015426	3	1	108	1	0	0	0	0	1	0	0	0	16407	1377	48	4	107	4	TNFRSF11A	18	60015426	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	120053	60015426	18061822	777	106375											
CDH7	1005	broad.mit.edu	37	chr18	63527052	63527052	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accacaacttttcattgaaaGataacaaaggtaatgtatta	5	6	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63527052	T	T	63527052	3	4	108	1	0	0	0	0	1	0	0	0	3145	942	33	3	1637	3	CDH7	18	63527052	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	3511626	63527052	14550196	778	106376											
ZNF236	7776	broad.mit.edu	37	chr18	74536211	74536211	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattcataggccacaccaaAccaggaattcttgtcgtgat	7	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74536211	G	G	74536211	1	3	108	0	1	0	0	0	0	0	0	0	17915	58	2	5		5	ZNF236	18	74536211	5'UTR	SNP	A	TCGA-44-2659-01A-01D-0969-08	11009159	74536211	3541037	779	106377											
ZNF236	7776	broad.mit.edu	37	chr18	74624443	74624443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattgtcatccatattctGtaaataaacgatctgagaca	5	9	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74624443	T	T	74624443	1	4	108	0	1	0	0	0	0	0	0	0	17915	1392	48	3		3	ZNF236	18	74624443	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	88232	74624443	3452805	780	106378											
NFATC1	4772	broad.mit.edu	37	chr18	77170072	77170072	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagatggggtggttggGgaaggtggtttttgaatgaa	19	0	0	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77170072	A	A	77170072	1	1	108	0	1	0	0	0	0	0	0	0	10456	1247	43	4		4	NFATC1	18	77170072	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2545629	77170072	907176	781	106379											
CTDP1	9150	broad.mit.edu	37	chr18	77488804	77488804	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacgtgttccctgttggggtGtgtgagtgtttacctagtcc	13	8	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77488804	C	C	77488804	1	2	108	0	1	0	0	0	0	0	0	0	4036	1392	48	4		4	CTDP1	18	77488804	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	318732	77488804	588444	782	106380											
LMNB2	84823	broad.mit.edu	37	chr19	2444345	2444345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagcgcccacctgccccCgtccaccccgtggtgccagg	11	22	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2444345	A	A	2444345	1	1	108	0	1	0	0	0	0	0	0	0	8924	667	23	1		1	LMNB2	19	2444345	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08		2444345	56684638	783	106381											
NCLN	56926	broad.mit.edu	37	chr19	3204605	3204605	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttccctgaggtacggttctCcatggtgcacaagcggatca	12	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3204605	T	T	3204605	3	4	108	1	0	0	0	0	1	0	0	0	10322	855	30	4	1098	4	NCLN	19	3204605	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	760260	3204605	55924378	784	106382											
NFIC	4782	broad.mit.edu	37	chr19	3452610	3452610	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctcaacccccaggacccGctcaaagatcttgtctcgct	6	17	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3452610	T	T	3452610	2	4	108	1	0	0	0	0	0	0	0	1	10467	1074	38	3		3	NFIC	19	3452610	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	248005	3452610	55676373	785	106383											
ANKRD24	170961	broad.mit.edu	37	chr19	4219712	4219712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcgccaggcccagagccGggcccaggaggctctggaca	16	15	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4219712	T	T	4219712	3	4	108	1	0	0	0	0	1	0	0	0	653	1116	39	1	3198	1	ANKRD24	19	4219712	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	767102	4219712	54909271	786	106384											
SEMA6B	10501	broad.mit.edu	37	chr19	4556234	4556234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcaggggctgaacctaGgactggctggggacacggtg	18	9	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4556234	T	T	4556234	1	4	108	0	1	0	0	0	0	0	0	0	14153	1015	35	2		2	SEMA6B	19	4556234	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	336522	4556234	54572749	787	106385											
FBN3	84467	broad.mit.edu	37	chr19	8183790	8183790	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacacttaccctcacaggCagtgcccttggccgtcagct	9	16	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8183790	G	G	8183790	3	3	108	1	0	0	0	0	1	0	0	0	5761	710	25	4	5257	4	FBN3	19	8183790	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	3627556	8183790	50945193	788	106386											
MUC16	94025	broad.mit.edu	37	chr19	9002093	9002093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggggcatagaaggagagGtaagctcctgccctttatga	13	7	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9002093	T	T	9002093	1	4	108	0	1	0	0	0	0	0	0	0	10067	1276	44	3		3	MUC16	19	9002093	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	818303	9002093	50126890	789	106387											
MUC16	94025	broad.mit.edu	37	chr19	9008065	9008065	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttagtcatcccatgtaaaAcaagtgacagaattttcaat	5	8	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9008065	G	G	9008065	1	3	108	0	1	0	0	0	0	0	0	0	10067	58	2	5		5	MUC16	19	9008065	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	5972	9008065	50120918	790	106388											
MUC16	94025	broad.mit.edu	37	chr19	9069492	9069492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgagaagctacttgcaCttggtaaggagctggtcaca	11	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9069492	A	A	9069492	3	1	108	1	0	0	0	0	1	0	0	0	10067	565	20	3	25897	3	MUC16	19	9069492	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	61427	9069492	50059491	791	106389											
MUC16	94025	broad.mit.edu	37	chr19	9089844	9089844	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggacttgagccagcagccgtCttgctcactgctggagacac	12	13	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9089844	A	A	9089844	3	1	108	1	0	0	0	0	1	0	0	0	10067	912	32	3	41888	3	MUC16	19	9089844	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	20352	9089844	50039139	792	106390											
OLFM2	93145	broad.mit.edu	37	chr19	9967991	9967991	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagggccatcacccgttgCtgcaggtcctcatacccgta	9	16	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9967991	T	T	9967991	2	4	108	1	0	0	0	0	0	0	0	1	10948	796	28	4		4	OLFM2	19	9967991	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	878147	9967991	49160992	793	106391											
OLFM2	93145	broad.mit.edu	37	chr19	9968420	9968420	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttggccgagagggacccatCagctgcccggagccgcgcat	14	15	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9968420	T	T	9968420	3	4	108	1	0	0	0	0	1	0	0	0	10948	826	29	4	1049	4	OLFM2	19	9968420	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	429	9968420	49160563	794	106392											
EMR2	30817	broad.mit.edu	37	chr19	14884566	14884566	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcctggcctcaaatgatcCacccgcctctgcctcccaaa	5	18	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14884566	T	T	14884566	1	4	108	0	1	0	0	0	0	0	0	0	5147	609	21	4		4	EMR2	19	14884566	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	4916146	14884566	44244417	795	106393											
MYO9B	4650	broad.mit.edu	37	chr19	17311437	17311438	+	Intron	INS	-	C	C													cctcaccggctgcttcctgtINScccccctcagccccctccgg							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17311438	C	C	17311437	6	5	108	0	1	1	1	0	0	0	0	0	10179	1682	58	0		0	MYO9B	19	17311437	Intron	INS	-	TCGA-44-2659-01A-01D-0969-08	2426871	17311437	41817546	796	106394											
ISYNA1	51477	broad.mit.edu	37	chr19	18546722	18546722	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtggttgtaactcacgaTggacatggtctgtgggtaca	14	7	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18546722	C	C	18546722	3	2	108	1	0	0	0	0	1	0	0	0	7937	1464	51	5	707	5	ISYNA1	19	18546722	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	1235285	18546722	40582261	797	106395											
PBX4	80714	broad.mit.edu	37	chr19	19681554	19681554	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcctctcttctcgggcctGcacacgccctcagccagcag	8	19	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19681554	A	A	19681554	2	1	108	1	0	0	0	0	0	0	0	1	11589	1311	46	4		4	PBX4	19	19681554	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	1134832	19681554	39447429	798	106396											
ZNF208	7757	broad.mit.edu	37	chr19	22155180	22155180	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcacatttgtagggtttctCtccagtatgaattttcttat	6	7	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22155180	T	T	22155180	3	4	108	1	0	0	0	0	1	0	0	0	17892	922	32	4	1190	4	ZNF208	19	22155180	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2473626	22155180	36973803	799	106397											
ZNF99	7652	broad.mit.edu	37	chr19	22941575	22941575	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctaagggctgacaaattgCtaaaagctttgccgcattct	8	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22941575	G	G	22941575	3	3	108	1	0	0	0	0	1	0	0	0	18333	797	28	4	2261	4	ZNF99	19	22941575	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	786395	22941575	36187408	800	106398											
ZNF91	7644	broad.mit.edu	37	chr19	23543836	23543837	+	Frame_Shift_Del	DEL	TA	-	-													ctctccagtatgaattctctTatgtttagcaagggctgaag							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23543837	-	-	23543836	7	5	108	1	0	1	0	1	0	0	0	0	18329	1763	61	0	1634	0	ZNF91	19	23543836	Frame_Shift_Del	DEL	TA	TCGA-44-2659-01A-01D-0969-08	602261	23543836	35585147	801	106399											
CCDC123	84902	broad.mit.edu	37	chr19	33457284	33457284	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttggtctctctggagatGggttggggctgcggggagga	19	7	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33457284	A	A	33457284	3	1	108	1	0	0	0	0	1	0	0	0	2785	1348	47	4	2295	4	CCDC123	19	33457284	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	9913448	33457284	25671699	802	106400											
KRTDAP	388533	broad.mit.edu	37	chr19	35978604	35978604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataccctcctaatgcccaCacctcttaccttaggaaagg	5	16	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35978604	A	A	35978604	1	1	108	0	1	0	0	0	0	0	0	0	8652	493	17	3		3	KRTDAP	19	35978604	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2521320	35978604	23150379	803	106401											
COX6B1	1340	broad.mit.edu	37	chr19	36145541	36145541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgcgaatggtaccagCgtgtgtaccagtccctctgc	12	12	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36145541	T	T	36145541	3	4	108	1	0	0	0	0	1	0	0	0	3808	768	27	4	181	4	COX6B1	19	36145541	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	166937	36145541	22983442	804	106402											
NPHS1	4868	broad.mit.edu	37	chr19	36322556	36322556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcaccctcagcaagaCgcctgagtctccgctgccag	8	18	4	2	rs144203682	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36322556	T	T	36322556	3	4	108	1	0	0	0	0	1	0	0	0	10677	536	19	4	474	4	NPHS1	19	36322556	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	177015	36322556	22806427	805	106403											
KIRREL2	84063	broad.mit.edu	37	chr19	36349458	36349458	+	Frame_Shift_Del	DEL	G	-	-													ccagcccaactgcacgtgctGggtaaggacctcgcccactt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36349458	-	-	36349458	7	5	108	1	0	1	0	1	0	0	0	0	8396	1362	47	0	370	0	KIRREL2	19	36349458	Frame_Shift_Del	DEL	G	TCGA-44-2659-01A-01D-0969-08	26902	36349458	22779525	806	106404											
WDR62	284403	broad.mit.edu	37	chr19	36594886	36594886	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctggagcccacctccggtGagtacagccctggagcaagg	13	14	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36594886	T	T	36594886	1	4	108	0	1	0	0	0	0	0	0	0	17440	1305	45	3		3	WDR62	19	36594886	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	245428	36594886	22534097	807	106405											
CATSPERG	57828	broad.mit.edu	37	chr19	38847195	38847195	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agataggaggtactcattacCccgatgggtctgcggtggga	15	8	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38847195	T	T	38847195	1	4	108	0	1	0	0	0	0	0	0	0	2718	638	22	4		4	CATSPERG	19	38847195	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2252309	38847195	20281788	808	106406											
IL28B	282617	broad.mit.edu	37	chr19	39734774	39734774	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcagggccagctcagcctcCaaagccacggggcgctccct	12	17	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39734774	G	G	39734774	3	3	108	1	0	0	0	0	1	0	0	0	7753	593	21	4	319	4	IL28B	19	39734774	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	887579	39734774	19394209	809	106407											
GMFG	9535	broad.mit.edu	37	chr19	39819649	39819649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctgaacctttgtgagCtctgctgtctgcaccagcct	9	14	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39819649	A	A	39819649	3	1	108	1	0	0	0	0	1	0	0	0	6554	796	28	3	88	3	GMFG	19	39819649	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	84875	39819649	19309334	810	106408											
SAMD4B	55095	broad.mit.edu	37	chr19	39847518	39847518	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgccgtcccccgaccctggCcccaggcccggcaccatgat	10	22	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39847518	T	T	39847518	1	4	108	0	1	0	0	0	0	0	0	0	13933	754	26	4		4	SAMD4B	19	39847518	5'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	27869	39847518	19281465	811	106409											
FCGBP	8857	broad.mit.edu	37	chr19	40368029	40368029	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagcagacagaaaaagggAgagacagaaaacaagacaca	13	6	0	5			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40368029	G	G	40368029	1	3	108	0	1	0	0	0	0	0	0	0	5835	319	11	5		5	FCGBP	19	40368029	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	520511	40368029	18760954	812	106410											
PSG6	5675	broad.mit.edu	37	chr19	43421817	43421817	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagaaccccatcctctccAggataccccatccagtcact	4	17	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43421817	T	T	43421817	1	4	108	0	1	0	0	0	0	0	0	0	12765	203	7	5		5	PSG6	19	43421817	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	3053788	43421817	15707166	813	106411											
PSG5	5673	broad.mit.edu	37	chr19	43687550	43687550	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttggatcattcatttcttCattccattccttcatttgtt	3	9	5	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43687550	A	A	43687550	1	1	108	0	1	0	0	0	0	0	0	0	12764	841	29	3		3	PSG5	19	43687550	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	265733	43687550	15441433	814	106412											
PSG4	5672	broad.mit.edu	37	chr19	43699021	43699021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccagggcagggagtcatGgccacctcggatgtccagaa	13	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43699021	T	T	43699021	1	4	108	0	1	0	0	0	0	0	0	0	12763	1363	47	2		2	PSG4	19	43699021	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	11471	43699021	15429962	815	106413											
PSG9	5678	broad.mit.edu	37	chr19	43771692	43771692	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagactgatctcctcctgctGagtccccccatcagactgtc	8	16	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43771692	C	C	43771692	1	2	108	0	1	0	0	0	0	0	0	0	12768	1305	45	4		4	PSG9	19	43771692	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	72671	43771692	15357291	816	106414											
IRGC	56269	broad.mit.edu	37	chr19	44223909	44223909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggacgcccagcgtgtccGcatcaaggccctggaggatg	15	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44223909	T	T	44223909	3	4	108	1	0	0	0	0	1	0	0	0	7908	1087	38	3	1201	3	IRGC	19	44223909	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	452217	44223909	14905074	817	106415											
RTN2	6253	broad.mit.edu	37	chr19	45998403	45998403	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagacggagcttcttctgcgAgagggaaagaatcgaagact	13	7	2	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45998403	C	C	45998403	1	2	108	0	1	0	0	0	0	0	0	0	13837	319	11	5		5	RTN2	19	45998403	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	1774494	45998403	13130580	818	106416											
TRPM4	54795	broad.mit.edu	37	chr19	49692405	49692406	+	Intron	DNP	TG	AT	AT													caagtggactctgggaagtaTggggatgagcccctgccatt							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	49692406	AT	AT	49692405	1	1	108	0	1	0	0	0	0	0	0	0	16713	1479	51	5		5	TRPM4	19	49692405	Intron	DNP	TG	TCGA-44-2659-01A-01D-0969-08	3694002	49692405	9436578	819	106417											
SIGLEC11	114132	broad.mit.edu	37	chr19	50462233	50462233	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggaccctccagactcCtgggcccccagtttggcact	12	15	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50462233	T	T	50462233	1	4	108	0	1	0	0	0	0	0	0	0	14420	696	24	4		4	SIGLEC11	19	50462233	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	769828	50462233	8666750	820	106418											
SIGLEC11	114132	broad.mit.edu	37	chr19	50463693	50463694	+	Intron	INS	-	T	T													cagggctgggacagagaccgINSggtgggagattcttgtgctg					rs33937902		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50463694	T	T	50463693	6	5	108	0	1	1	1	0	0	0	0	0	14420	1131	39	0		0	SIGLEC11	19	50463693	Intron	INS	-	TCGA-44-2659-01A-01D-0969-08	1460	50463693	8665290	821	106419											
MYBPC2	4606	broad.mit.edu	37	chr19	50954516	50954516	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgagtttagacctaactgtCcagtcttctttgtcttgcag	8	10	3	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50954516	A	A	50954516	1	1	108	0	1	0	0	0	0	0	0	0	10106	870	30	3		3	MYBPC2	19	50954516	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	490823	50954516	8174467	822	106420											
SIGLEC8	27181	broad.mit.edu	37	chr19	51956036	51956036	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgctttcctccaacattTaacacttactgagcacctgt	4	13	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51956036	G	G	51956036	1	3	108	0	1	0	0	0	0	0	0	0	14427	1769	61	5		5	SIGLEC8	19	51956036	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	1001520	51956036	7172947	823	106421											
ZNF432	9668	broad.mit.edu	37	chr19	52538783	52538783	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatccttggtgttttatttTgtttattattattatttttt	4	2	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52538783	C	C	52538783	1	2	108	0	1	0	0	0	0	0	0	0	18033	1827	63	5		5	ZNF432	19	52538783	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	582747	52538783	6590200	824	106422											
ZNF611	81856	broad.mit.edu	37	chr19	53208882	53208882	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaaggtttttctccacagtCaattctagtatgttttgcca	7	8	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53208882	T	T	53208882	3	4	108	1	0	0	0	0	1	0	0	0	18164	826	29	4	695	4	ZNF611	19	53208882	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	670099	53208882	5920101	825	106423											
ZNF845	91664	broad.mit.edu	37	chr19	53854476	53854476	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcccaaagaatttcttgtaGgcctaaaacccacatttcta	4	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53854476	C	C	53854476	3	2	108	1	0	0	0	0	1	0	0	0	18320	1000	35	4	558	4	ZNF845	19	53854476	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	645594	53854476	5274507	826	106424											
LILRA1	11024	broad.mit.edu	37	chr19	55106135	55106135	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatttccttccagggaccCtccccaagcccacactctgg	7	18	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55106135	T	T	55106135	3	4	108	1	0	0	0	0	1	0	0	0	8856	681	24	4	86	4	LILRA1	19	55106135	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	1251659	55106135	4022848	827	106425											
TNNT1	7138	broad.mit.edu	37	chr19	55656723	55656723	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaagaagaggaagtggagGaggaggagggaggaggaggg	26	0	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55656723	T	T	55656723	1	4	108	0	1	0	0	0	0	0	0	0	16453	1189	41	3		3	TNNT1	19	55656723	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	550588	55656723	3472260	828	106426											
SAPS1	22870	broad.mit.edu	37	chr19	55742243	55742243	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggacagaggtagaggggtcTctggttgcactgtgggtgag	20	5	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55742243	A	A	55742243	3	1	108	1	0	0	0	0	1	0	0	0	13948	1548	54	5	188	5	SAPS1	19	55742243	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	85520	55742243	3386740	829	106427											
COX6B2	125965	broad.mit.edu	37	chr19	55865866	55865866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccatttccccttggggggCtcctgggcttccacatccaa	10	15	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55865866	A	A	55865866	3	1	108	1	0	0	0	0	1	0	0	0	3809	796	28	3	254	3	COX6B2	19	55865866	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	123623	55865866	3263117	830	106428											
ZNF579	163033	broad.mit.edu	37	chr19	56090015	56090015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtccttcttgcccgccgCgggcagcggggccagcaggc	16	16	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56090015	A	A	56090015	3	1	108	1	0	0	0	0	1	0	0	0	18138	768	27	3	701	3	ZNF579	19	56090015	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	224149	56090015	3038968	831	106429											
NLRP5	126206	broad.mit.edu	37	chr19	56539899	56539899	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtaccccaggcagttttatCctatgccgtgtgctgagctc	10	12	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56539899	G	G	56539899	1	3	108	0	1	0	0	0	0	0	0	0	10575	870	30	4		4	NLRP5	19	56539899	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	449884	56539899	2589084	832	106430											
NLRP5	126206	broad.mit.edu	37	chr19	56544904	56544904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtctccccttccccattGcaggtttagaaatgcacaga	8	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56544904	T	T	56544904	1	4	108	0	1	0	0	0	0	0	0	0	10575	1334	46	3		3	NLRP5	19	56544904	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5005	56544904	2584079	833	106431											
ZNF667	63934	broad.mit.edu	37	chr19	56954088	56954088	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttggaggtaacttcttGgtctcacatttagaccccga	9	9	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56954088	T	T	56954088	2	4	108	1	0	0	0	0	0	0	0	1	18201	1335	47	2		2	ZNF667	19	56954088	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	409184	56954088	2174895	834	106432											
ZSCAN1	284312	broad.mit.edu	37	chr19	58556366	58556366	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagaagctggaggaaggcGgccctgtgtacagcgccccc	14	13	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58556366	A	A	58556366	1	1	108	0	1	0	0	0	0	0	0	0	18355	1131	39	4		4	ZSCAN1	19	58556366	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1602278	58556366	572617	835	106433											
ZNF135	7694	broad.mit.edu	37	chr19	58579729	58579730	+	Missense_Mutation	DNP	GG	AA	AA													ccacctcactcagcaccggaGgatccacacaggagagaagc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	58579730	AA	AA	58579729	3	1	108	1	0	0	0	0	1	0	0	0	17851	1000	35	4	2080	4	ZNF135	19	58579729	Missense_Mutation	DNP	GG	TCGA-44-2659-01A-01D-0969-08	23363	58579729	549254	836	106434											
SNPH	9751	broad.mit.edu	37	chr20	1286120	1286120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgtggcatggaggctGgtgtgcaggccagctgcatg	18	8	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1286120	T	T	1286120	3	4	108	1	0	0	0	0	1	0	0	0	14964	1348	47	2	921	2	SNPH	20	1286120	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08		1286120	61739400	837	106435											
SIRPB2	284759	broad.mit.edu	37	chr20	1460697	1460697	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccagtcattcctgctgctCtgcccagaggcatctacaaa	8	14	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1460697	A	A	1460697	3	1	108	1	0	0	0	0	1	0	0	0	14447	912	32	3	945	3	SIRPB2	20	1460697	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	174577	1460697	61564823	838	106436											
PTPRA	5786	broad.mit.edu	37	chr20	3007519	3007519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtactagttaatgattggcGtatagacaagaatcatggca	11	5	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3007519	T	T	3007519	1	4	108	0	1	0	0	0	0	0	0	0	12903	1160	40	3		3	PTPRA	20	3007519	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1546822	3007519	60018001	839	106437											
SIGLEC1	6614	broad.mit.edu	37	chr20	3677979	3677979	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtgatggtgcaatggcCaggacagtggctggagagca	18	6	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3677979	A	A	3677979	2	1	108	1	0	0	0	0	0	0	0	1	14418	581	21	2		2	SIGLEC1	20	3677979	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	670460	3677979	59347541	840	106438											
PLCB4	5332	broad.mit.edu	37	chr20	9319711	9319711	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagttaaatggcctccttcTcttccccaccatgtatatat	4	13	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9319711	A	A	9319711	1	1	108	0	1	0	0	0	0	0	0	0	12125	1566	54	5		5	PLCB4	20	9319711	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	5641732	9319711	53705809	841	106439											
PAK7	57144	broad.mit.edu	37	chr20	9546606	9546606	+	Frame_Shift_Del	DEL	C	-	-													ttcttcactgcaacttgtttCcctgtgtgtttctcggtggc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9546606	-	-	9546606	7	5	108	1	0	1	0	1	0	0	0	0	11499	842	30	0	767	0	PAK7	20	9546606	Frame_Shift_Del	DEL	C	TCGA-44-2659-01A-01D-0969-08	226895	9546606	53478914	842	106440											
SEL1L2	80343	broad.mit.edu	37	chr20	13894608	13894608	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctgtttcaagaatataaAgtcaagtttgattttcaaaa	6	5	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13894608	G	G	13894608	1	3	108	0	1	0	0	0	0	0	0	0	14124	87	3	5		5	SEL1L2	20	13894608	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	4348002	13894608	49130912	843	106441											
KIF16B	55614	broad.mit.edu	37	chr20	16336950	16336950	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagtctccaacctccattctCcagaagagtcaagaagacac	6	13	3	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16336950	T	T	16336950	1	4	108	0	1	0	0	0	0	0	0	0	8348	870	30	4		4	KIF16B	20	16336950	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2442342	16336950	46688570	844	106442											
NINL	22981	broad.mit.edu	37	chr20	25450616	25450616	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggtctgggtaggggcGtggcccttacctctgtgcat	15	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25450616	A	A	25450616	1	1	108	0	1	0	0	0	0	0	0	0	10515	1160	40	4		4	NINL	20	25450616	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	9113666	25450616	37574904	845	106443											
XKR7	343702	broad.mit.edu	37	chr20	30585000	30585000	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcggcgggagagcgtgcaGggacccccaccccacctgtc	13	18	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30585000	T	T	30585000	3	4	108	1	0	0	0	0	1	0	0	0	17563	1000	35	2	1490	2	XKR7	20	30585000	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	5134384	30585000	32440520	846	106444											
SUN5	140732	broad.mit.edu	37	chr20	31590553	31590553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcacccagagcttggtgCgaacatccctgcccctgccc	11	17	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31590553	A	A	31590553	1	1	108	0	1	0	0	0	0	0	0	0	15512	783	27	3		3	SUN5	20	31590553	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1005553	31590553	31434967	847	106445											
C20orf185	359710	broad.mit.edu	37	chr20	31651554	31651554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccaatggggtagggtaCgaaggggagccagaagcggc	18	9	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31651554	A	A	31651554	1	1	108	0	1	0	0	0	0	0	0	0	2119	551	19	3		3	C20orf185	20	31651554	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	61001	31651554	31373966	848	106446											
GDF5	8200	broad.mit.edu	37	chr20	33971760	33971760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcattcgctaaaactcacCtagctaacaattttgttgag	6	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33971760	A	A	33971760	1	1	108	0	1	0	0	0	0	0	0	0	6380	696	24	2		2	GDF5	20	33971760	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2320206	33971760	29053760	849	106447											
C20orf132	140699	broad.mit.edu	37	chr20	35737029	35737029	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatccagtcagtacccatccTcctgagctcattgtgatcca	6	14	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35737029	C	C	35737029	3	2	108	1	0	0	0	0	1	0	0	0	2108	1550	54	5	183	5	C20orf132	20	35737029	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	1765269	35737029	27288491	850	106448											
PTPRT	11122	broad.mit.edu	37	chr20	40748659	40748659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtctgttgtcaaagcttGcaaacagcacaatattaata	7	7	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40748659	T	T	40748659	1	4	108	0	1	0	0	0	0	0	0	0	12920	1334	46	3		3	PTPRT	20	40748659	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5011630	40748659	22276861	851	106449											
TOX2	84969	broad.mit.edu	37	chr20	42697209	42697209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccaggggtgggggtgggGcgtacagtgcaggggtcctg	21	7	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42697209	T	T	42697209	1	4	108	0	1	0	0	0	0	0	0	0	16502	1218	42	3		3	TOX2	20	42697209	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	1948550	42697209	20328311	852	106450											
HNF4A	3172	broad.mit.edu	37	chr20	43052640	43052640	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgccctcccttgccCaccctcttccattgtagatg	6	19	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43052640	T	T	43052640	1	4	108	0	1	0	0	0	0	0	0	0	7320	609	21	4		4	HNF4A	20	43052640	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	355431	43052640	19972880	853	106451											
SLC12A5	57468	broad.mit.edu	37	chr20	44664173	44664173	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaaaagaagccggtgcAggtgaggacctcgggggatg	18	6	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44664173	T	T	44664173	3	4	108	1	0	0	0	0	1	0	0	0	14499	202	7	5	413	5	SLC12A5	20	44664173	Missense_Mutation	SNP	A	TCGA-44-2659-01A-01D-0969-08	1611533	44664173	18361347	854	106452											
SLC12A5	57468	broad.mit.edu	37	chr20	44664187	44664187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgcaggtgaggacctcgGgggatgagaaatggaagaaa	18	5	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44664187	T	T	44664187	1	4	108	0	1	0	0	0	0	0	0	0	14499	1247	43	2		2	SLC12A5	20	44664187	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	14	44664187	18361333	855	106453											
PREX1	57580	broad.mit.edu	37	chr20	47267409	47267409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggacctgtggcagagaCcccggagggagcacgcaggc	17	12	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47267409	A	A	47267409	1	1	108	0	1	0	0	0	0	0	0	0	12582	522	18	3		3	PREX1	20	47267409	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2603222	47267409	15758111	856	106454											
TPTE	7179	broad.mit.edu	37	chr21	10934860	10934860	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatgattaaatgcaatctAaaaaacaaaatcatcttctt	2	7	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10934860	G	G	10934860	1	3	108	0	1	0	0	0	0	0	0	0	16554	377	13	5		5	TPTE	21	10934860	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08		10934860	37195035	857	106455											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296390	28296390	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctaacatttcttcaacaaGcattgcttaaacgcagaagg	8	9	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28296390	T	T	28296390	4	4	108	1	0	0	0	0	0	1	0	0	269	963	34	3	21	3	ADAMTS5	21	28296390	Nonsense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	17361530	28296390	19833505	858	106456											
USP16	10600	broad.mit.edu	37	chr21	30415863	30415863	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagaagtgatattccttcTggaacaagtaagcacttaca	9	7	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30415863	C	C	30415863	2	2	108	1	0	0	0	0	0	0	0	1	17173	1567	55	5		5	USP16	21	30415863	Silent	SNP	T	TCGA-44-2659-01A-01D-0969-08	2119473	30415863	17714032	859	106457											
KRTAP19-2	337969	broad.mit.edu	37	chr21	31859737	31859737	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagtagctcacggtgtcagaGatagtgagttgggtttgctg	15	5	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31859737	C	C	31859737	1	2	108	0	1	0	0	0	0	0	0	0	8600	957	33	4		4	KRTAP19-2	21	31859737	5'Flank	SNP	G	TCGA-44-2659-01A-01D-0969-08	1443874	31859737	16270158	860	106458											
TTC3	7267	broad.mit.edu	37	chr21	38501406	38501406	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttttttccccttaatataCtcttcccaagaaaaaggaaa	4	9	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38501406	T	T	38501406	1	4	108	0	1	0	0	0	0	0	0	0	16823	580	20	4		4	TTC3	21	38501406	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	6641669	38501406	9628489	861	106459											
HMGN1	3150	broad.mit.edu	37	chr21	40720300	40720300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcactgagcgtcctcaccCgggacgacccgcggaaaacg	12	16	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40720300	A	A	40720300	1	1	108	0	1	0	0	0	0	0	0	0	7301	667	23	1		1	HMGN1	21	40720300	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2218894	40720300	7409595	862	106460											
ABCG1	9619	broad.mit.edu	37	chr21	43711095	43711095	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatctctcagtgccctaggCcagagctgggttaccagccg	11	14	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43711095	T	T	43711095	1	4	108	0	1	0	0	0	0	0	0	0	68	754	26	4		4	ABCG1	21	43711095	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	2990795	43711095	4418800	863	106461											
KRTAP10-12	386685	broad.mit.edu	37	chr21	46117289	46117289	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaccccagtgagccgtgTatccagcccctgctgccgag	11	17	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46117289	A	A	46117289	3	1	108	1	0	0	0	0	1	0	0	0	8579	1638	57	5	175	5	KRTAP10-12	21	46117289	Missense_Mutation	SNP	T	TCGA-44-2659-01A-01D-0969-08	2406194	46117289	2012606	864	106462											
CCT8L2	150160	broad.mit.edu	37	chr22	17072820	17072820	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagtgtccccccgggcagCgcgcacaccccaacacgctc	9	21	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17072820	G	G	17072820	2	3	108	1	0	0	0	0	0	0	0	1	2991	755	27	4		4	CCT8L2	22	17072820	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08		17072820	34231746	865	106463											
CECR5	27440	broad.mit.edu	37	chr22	17630516	17630516	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaacaaaaaccacgggcacCcgcagctgcccctgggagtt	11	14	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17630516	G	G	17630516	2	3	108	1	0	0	0	0	0	0	0	1	3237	610	22	4		4	CECR5	22	17630516	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	557696	17630516	33674050	866	106464											
GNB1L	54584	broad.mit.edu	37	chr22	19808292	19808292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagggggcagaagggtgtGctgaatgctctggggccagc	19	8	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19808292	T	T	19808292	1	4	108	0	1	0	0	0	0	0	0	0	6580	1334	46	3		3	GNB1L	22	19808292	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	2177776	19808292	31496274	867	106465											
SEZ6L	23544	broad.mit.edu	37	chr22	26709619	26709619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagacacctgtccacaGtacacagagattcacggctg	11	11	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26709619	T	T	26709619	1	4	108	0	1	0	0	0	0	0	0	0	14256	1044	36	3		3	SEZ6L	22	26709619	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	6901327	26709619	24594947	868	106466											
ZMAT5	55954	broad.mit.edu	37	chr22	30134177	30134177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggggccccaagggctcCtcggggagctatgtgtaggc	17	12	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30134177	A	A	30134177	1	1	108	0	1	0	0	0	0	0	0	0	17821	696	24	2		2	ZMAT5	22	30134177	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	3424558	30134177	21170389	869	106467											
OSBP2	23762	broad.mit.edu	37	chr22	31287087	31287087	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccatacccaaggggccAtcaagctgaggtccagccag	11	15	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31287087	T	T	31287087	1	4	108	0	1	0	0	0	0	0	0	0	11368	232	8	5		5	OSBP2	22	31287087	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	1152910	31287087	20017479	870	106468											
IL2RB	3560	broad.mit.edu	37	chr22	37533689	37533689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgtctttcaaagtagtGggaggcttgggagatttccc	14	7	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37533689	T	T	37533689	3	4	108	1	0	0	0	0	1	0	0	0	7757	1348	47	2	1200	2	IL2RB	22	37533689	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	6246602	37533689	13770877	871	106469											
PNPLA5	150379	broad.mit.edu	37	chr22	44276628	44276628	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaggacaaaggccagagCaggaatcaagggacaccagt	12	10	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44276628	A	A	44276628	1	1	108	0	1	0	0	0	0	0	0	0	12263	725	25	3		3	PNPLA5	22	44276628	3'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	6742939	44276628	7027938	872	106470											
PARVG	64098	broad.mit.edu	37	chr22	44581730	44581730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacttcccggaaggaccCcaaatttgaagaactgcaga	8	13	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44581730	A	A	44581730	3	1	108	1	0	0	0	0	1	0	0	0	11564	623	22	2	128	2	PARVG	22	44581730	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	305102	44581730	6722836	873	106471											
PLXNB2	23654	broad.mit.edu	37	chr22	50719028	50719028	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttcccgtgcagcgccacCgtcagcagggacgcgaagta	13	13	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50719028	A	A	50719028	2	1	108	1	0	0	0	0	0	0	0	1	12219	639	23	1		1	PLXNB2	22	50719028	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	6137298	50719028	585538	874	106472											
SBF1	6305	broad.mit.edu	37	chr22	50900255	50900255	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcagcctccggctctcCcgctgcacggcctccagggt	14	18	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50900255	A	A	50900255	2	1	108	1	0	0	0	0	0	0	0	1	13970	610	22	2		2	SBF1	22	50900255	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	181227	50900255	404311	875	106473											
IL3RA	3563	broad.mit.edu	37	chrX	1460672	1460672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcccgatggtcctcctttGgctcacgctgctcctgatcg	10	15	1	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1460672	T	T	1460672	3	4	108	1	0	0	0	0	1	0	0	0	7765	1357	47	2	16	2	IL3RA	23	1460672	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08		1460672	153809888	876	106474											
IL3RA	3563	broad.mit.edu	37	chrX	1475004	1475004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttttctctcccgctctcCaaatgcataggagaagtaat	7	10	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1475004	A	A	1475004	1	1	108	0	1	0	0	0	0	0	0	0	7765	609	21	2		2	IL3RA	23	1475004	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	14332	1475004	153795556	877	106475											
ASMTL	8623	broad.mit.edu	37	chrX	1561078	1561078	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagggcaggggccccttgCctggtacagccggttggcca	16	13	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1561078	A	A	1561078	5	1	108	1	0	0	0	0	0	0	1	0	1050	753	26	3	1687	3	ASMTL	23	1561078	Splice_Site	SNP	C	TCGA-44-2659-01A-01D-0969-08	86074	1561078	153709482	878	106476											
ARSF	416	broad.mit.edu	37	chrX	2990067	2990067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatccctgcttgctttccagGagacccttggtcttcatgtc	8	13	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2990067	T	T	2990067	3	4	108	1	0	0	0	0	1	0	0	0	995	1188	41	3	18	3	ARSF	23	2990067	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	1428989	2990067	152280493	879	106477											
ARHGAP6	395	broad.mit.edu	37	chrX	11196361	11196361	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccagctgttcctccggCtccaacactaagcaaggcaa	9	15	0	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11196361	T	T	11196361	2	4	108	1	0	0	0	0	0	0	0	1	889	796	28	4		4	ARHGAP6	23	11196361	Silent	SNP	C	TCGA-44-2659-01A-01D-0969-08	8206294	11196361	144074199	880	106478											
FANCB	2187	broad.mit.edu	37	chrX	14883648	14883648	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcattccacaatatcaagtCtttgtgctgatctaattttc	5	9	4	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14883648	A	A	14883648	1	1	108	0	1	0	0	0	0	0	0	0	5720	928	32	3		3	FANCB	23	14883648	5'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	3687287	14883648	140386912	881	106479											
ACE2	59272	broad.mit.edu	37	chrX	15607507	15607507	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcttcaatcaactggccgCggctgtagtcatagccatct	8	13	5	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15607507	G	G	15607507	3	3	108	1	0	0	0	0	1	0	0	0	137	768	27	4	1817	4	ACE2	23	15607507	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	723859	15607507	139663053	882	106480											
CTPS2	56474	broad.mit.edu	37	chrX	16638217	16638217	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagagcctccgccccccactCcccacccctgtcccctcgcc	6	26	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16638217	A	A	16638217	1	1	108	0	1	0	0	0	0	0	0	0	4057	870	30	3		3	CTPS2	23	16638217	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	1030710	16638217	138632343	883	106481											
MAGEB1	4112	broad.mit.edu	37	chrX	30269510	30269510	+	Frame_Shift_Del	DEL	C	-	-													ggtgccactccccgtgacttCccatcccattatgaagaggc							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30269510	-	-	30269510	7	5	108	1	0	1	0	1	0	0	0	0	9264	854	30	0	902	0	MAGEB1	23	30269510	Frame_Shift_Del	DEL	C	TCGA-44-2659-01A-01D-0969-08	13631293	30269510	125001050	884	106482											
CXorf22	170063	broad.mit.edu	37	chrX	35937818	35937818	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgagagcagggcttgaaaCtagcgcttggcgtctgatgg	15	7	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35937818	G	G	35937818	1	3	108	0	1	0	0	0	0	0	0	0	4135	580	20	4		4	CXorf22	23	35937818	5'Flank	SNP	C	TCGA-44-2659-01A-01D-0969-08	5668308	35937818	119332742	885	106483											
CXorf22	170063	broad.mit.edu	37	chrX	35974046	35974046	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggattccccaaacacttTttatgttcaacagctattat	4	10	2	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35974046	C	C	35974046	1	2	108	0	1	0	0	0	0	0	0	0	4135	1856	64	5		5	CXorf22	23	35974046	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	36228	35974046	119296514	886	106484											
PAGE1	8712	broad.mit.edu	37	chrX	49455831	49455831	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacagacaccctacaatttgCatgcttaatggactacctac	5	12	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49455831	G	G	49455831	1	3	108	0	1	0	0	0	0	0	0	0	11483	725	25	4		4	PAGE1	23	49455831	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	13481785	49455831	105814729	887	106485											
HUWE1	10075	broad.mit.edu	37	chrX	53608003	53608003	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacctagtaaagagagaaaGaaacactgtcgattaaacac	7	8	0	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53608003	A	A	53608003	1	1	108	0	1	0	0	0	0	0	0	0	7531	957	33	4		4	HUWE1	23	53608003	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	4152172	53608003	101662557	888	106486											
OTUD6A	139562	broad.mit.edu	37	chrX	69282458	69282458	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggcccagatccggagCttaaaaaactcggtccccaa	9	14	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69282458	G	G	69282458	3	3	108	1	0	0	0	0	1	0	0	0	11410	796	28	4	86	4	OTUD6A	23	69282458	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	15674455	69282458	85988102	889	106487											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104511933	104511933	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catttgtgatttttcttggtCattgacttaactccttagtt	6	7	2	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104511933	A	A	104511933	1	1	108	0	1	0	0	0	0	0	0	0	7732	841	29	3		3	IL1RAPL2	23	104511933	Intron	SNP	C	TCGA-44-2659-01A-01D-0969-08	35229475	104511933	50758627	890	106488											
GUCY2F	2986	broad.mit.edu	37	chrX	108638599	108638599	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcatcaaaagttggtcGttgttctgcagcctcagccc	8	11	4	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108638599	T	T	108638599	2	4	108	1	0	0	0	0	0	0	0	1	6963	1153	40	3		3	GUCY2F	23	108638599	Silent	SNP	G	TCGA-44-2659-01A-01D-0969-08	4126666	108638599	46631961	891	106489											
GUCY2F	2986	broad.mit.edu	37	chrX	108652325	108652325	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgggaacagaattctgtcaCaatggcaaacatccccgaat	8	11	2	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108652325	A	A	108652325	3	1	108	1	0	0	0	0	1	0	0	0	6963	478	17	3	1506	3	GUCY2F	23	108652325	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	13726	108652325	46618235	892	106490											
GUCY2F	2986	broad.mit.edu	37	chrX	108708207	108708207	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctcaaataatatgccttTgtttcacaaatgttttcagc	4	8	3	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108708207	A	A	108708207	1	1	108	0	1	0	0	0	0	0	0	0	6963	1827	63	5		5	GUCY2F	23	108708207	Intron	SNP	T	TCGA-44-2659-01A-01D-0969-08	55882	108708207	46562353	893	106491											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698533	111698533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactagctgatcccaacCaggatgaagagagtgtcact	11	10	1	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111698533	A	A	111698533	3	1	108	1	0	0	0	0	1	0	0	0	17710	595	21	2	579	2	ZCCHC16	23	111698533	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	2990326	111698533	43572027	894	106492											
KIAA1210	57481	broad.mit.edu	37	chrX	118222495	118222496	+	Frame_Shift_Ins	INS	-	A	A													ataaaatcattctgctcttcINSaggagtattatttgaagcag							TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118222496	A	A	118222495	7	5	108	1	0	1	1	0	0	0	0	0	8284	835	29	0	2447	0	KIAA1210	23	118222495	Frame_Shift_Ins	INS	-	TCGA-44-2659-01A-01D-0969-08	6523962	118222495	37048065	895	106493											
ODZ1	10178	broad.mit.edu	37	chrX	123663869	123663869	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcaaacagaaaagcatGttgagactagattctagaag	10	5	1	4			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123663869	C	C	123663869	1	2	108	0	1	0	0	0	0	0	0	0	10929	1392	48	4		4	ODZ1	23	123663869	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	5441374	123663869	31606691	896	106494											
ODZ1	10178	broad.mit.edu	37	chrX	123870955	123870955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagagtccgctgcaggggGtggcttcctggcacaggtgc	17	10	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123870955	T	T	123870955	3	4	108	1	0	0	0	0	1	0	0	0	10929	1261	44	3	7686	3	ODZ1	23	123870955	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	207086	123870955	31399605	897	106495											
SAGE1	55511	broad.mit.edu	37	chrX	134988770	134988770	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catatgcatgcatagtgtcaAaaagcatacaaggtggtttt	9	6	1	0			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134988770	T	T	134988770	1	4	108	0	1	0	0	0	0	0	0	0	13920	29	1	5		5	SAGE1	23	134988770	Intron	SNP	A	TCGA-44-2659-01A-01D-0969-08	11117815	134988770	20281790	898	106496											
SAGE1	55511	broad.mit.edu	37	chrX	134992580	134992580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttgtttccagatgctgCagtcactcacaacatccgtg	7	12	3	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134992580	A	A	134992580	3	1	108	1	0	0	0	0	1	0	0	0	13920	710	25	3	1929	3	SAGE1	23	134992580	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	3810	134992580	20277980	899	106497											
GPR112	139378	broad.mit.edu	37	chrX	135431732	135431732	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggctttctgagaacccttCattatcaacatctttaagag	7	9	4	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135431732	T	T	135431732	3	4	108	1	0	0	0	0	1	0	0	0	6694	838	29	4	5877	4	GPR112	23	135431732	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	439152	135431732	19838828	900	106498											
CD40LG	959	broad.mit.edu	37	chrX	135741330	135741330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaccttctgttccaatcGggaagcttcgagtcaagctc	9	12	3	0	rs11575982	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135741330	T	T	135741330	3	4	108	1	0	0	0	0	1	0	0	0	3046	1116	39	1	560	1	CD40LG	23	135741330	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	309598	135741330	19529230	901	106499											
MAGEC1	9947	broad.mit.edu	37	chrX	140995244	140995244	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagagtgctcctgaggGggaggattccctgtctcctc	13	12	1	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995244	A	A	140995244	3	1	108	1	0	0	0	0	1	0	0	0	9272	1232	43	4	2060	4	MAGEC1	23	140995244	Missense_Mutation	SNP	G	TCGA-44-2659-01A-01D-0969-08	5253914	140995244	14275316	902	106500											
HSFX2	100130086	broad.mit.edu	37	chrX	148839601	148839601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattcccaacgccgaatgaGgaggcacctcagtctaagat	10	11	2	3			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148839601	T	T	148839601	1	4	108	0	1	0	0	0	0	0	0	0	7468	1015	35	2		2	HSFX2	23	148839601	Intron	SNP	G	TCGA-44-2659-01A-01D-0969-08	7844357	148839601	6430959	903	106501											
PNMA5	114824	broad.mit.edu	37	chrX	152158595	152158595	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgttaggggctatgggccCggcccccactgaaccagatg	13	14	0	2			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152158595	A	A	152158595	1	1	108	0	1	0	0	0	0	0	0	0	12251	667	23	1		1	PNMA5	23	152158595	3'UTR	SNP	C	TCGA-44-2659-01A-01D-0969-08	3318994	152158595	3111965	904	106502											
ZNF275	10838	broad.mit.edu	37	chrX	152611179	152611217	+	Intron	DEL	AGGTTAGGGTTGGGGGTCCCAGCTGAGCTCTTGGAGTTG	-	-													cagctgagctgttaggcttcAggttagggttgggggtccca					rs68194402	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152611217	-	-	152611179	6	5	108	0	1	1	0	1	0	0	0	0	17936	203	7	0		0	ZNF275	23	152611179	Intron	DEL	AGGTTAGGGTTGGGGGTCCCAGCTGAGCTCTTGGAGTTG	TCGA-44-2659-01A-01D-0969-08	452584	152611179	2659381	905	106503											
HAUS7	55559	broad.mit.edu	37	chrX	152721086	152721086	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctgggcgctggcagcactCgcccagctcgtcgtcgtaga	14	15	0	1			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152721086	G	G	152721086	3	3	108	1	0	0	0	0	1	0	0	0	7037	893	31	4	244	4	HAUS7	23	152721086	Missense_Mutation	SNP	C	TCGA-44-2659-01A-01D-0969-08	109907	152721086	2549474	906	106504											
TTLL10	254173	broad.mit.edu	37	chr1	1117200	1117201	+	Intron	INS	-	CTCAG	CTCAG													cctcaggccacagaggtagaINSctcagcccagctgtgagggg							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTCAG	1117201	CTCAG	CTCAG	1117200	6	5	109	0	1	1	1	0	0	0	0	0	16849	290	10	0		0	TTLL10	1	1117200	Intron	INS	-	TCGA-44-2661-01A-01D-1105-08		1117200	248133421	1	106505											
COL8A2	1296	broad.mit.edu	37	chr1	36563091	36563091	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcttttgtttttttttcCaggaggttctttgtaattga	8	5	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36563091	T	T	36563091	1	4	109	0	1	0	0	0	0	0	0	0	3738	609	21	4		4	COL8A2	1	36563091	3'UTR	SNP	C	TCGA-44-2661-01A-01D-1105-08	35445891	36563091	212687530	2	106506											
YBX1	4904	broad.mit.edu	37	chr1	43162979	43162979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaaaatttcctcaaacccGtgttaggactcagcaatatc	5	10	2	0	rs141672298	by1000genomes	TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43162979	A	A	43162979	1	1	109	0	1	0	0	0	0	0	0	0	17596	1160	40	4		4	YBX1	1	43162979	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	6599888	43162979	206087642	3	106507											
SLC6A9	6536	broad.mit.edu	37	chr1	44474144	44474144	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggcgtccagtacaccGgcgcagtcatgcgtgttcca	13	12	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44474144	A	A	44474144	2	1	109	1	0	0	0	0	0	0	0	1	14805	1103	39	4		4	SLC6A9	1	44474144	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08	1311165	44474144	204776477	4	106508											
CYP4B1	1580	broad.mit.edu	37	chr1	47280987	47280987	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcagcccttgggaagggcGatgcccatcctgtcctgaac	12	14	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47280987	A	A	47280987	1	1	109	0	1	0	0	0	0	0	0	0	4218	1073	37	4		4	CYP4B1	1	47280987	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	2806843	47280987	201969634	5	106509											
PIP5K1A	8394	broad.mit.edu	37	chr1	151212392	151212392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggactagagttcctcttgcCgggcctcctaactctatagc	9	13	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151212392	A	A	151212392	1	1	109	0	1	0	0	0	0	0	0	0	12034	667	23	1		1	PIP5K1A	1	151212392	Intron	SNP	C	TCGA-44-2661-01A-01D-1105-08	103931405	151212392	98038229	6	106510											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	109	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-44-2661-01A-01D-1105-08	530168	151742560	97508061	7	106511											
S100A14	57402	broad.mit.edu	37	chr1	153588243	153588243	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaagtcagtggggggacaTagaccctcagggtgaaggag	17	7	2	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153588243	C	C	153588243	1	2	109	0	1	0	0	0	0	0	0	0	13887	1421	49	5		5	S100A14	1	153588243	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08	1845683	153588243	95662378	8	106512											
FAM5C	339479	broad.mit.edu	37	chr1	190067976	190067976	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatctcgagatcttgcagGtcagtttcaaagccaatata	7	9	5	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067976	A	A	190067976	2	1	109	1	0	0	0	0	0	0	0	1	5645	1252	44	4		4	FAM5C	1	190067976	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08	36479733	190067976	59182645	9	106513											
FAM58B	339521	broad.mit.edu	37	chr1	200182895	200182895	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctgcgagaccatcctGgacgcctttgacccttacct	7	15	2	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200182895	T	T	200182895	2	4	109	1	0	0	0	0	0	0	0	1	5642	1335	47	2		2	FAM58B	1	200182895	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08	10114919	200182895	49067726	10	106514											
C1orf106	55765	broad.mit.edu	37	chr1	200868613	200868613	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcaggccccgacagccCggtctccccaatgaaggagc	11	17	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200868613	T	T	200868613	3	4	109	1	0	0	0	0	1	0	0	0	2000	652	23	4	333	4	C1orf106	1	200868613	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	685718	200868613	48382008	11	106515											
DUSP10	11221	broad.mit.edu	37	chr1	221875902	221875902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctttgacaaatttataaGcatcagtcatggtcatccga	7	9	3	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221875902	A	A	221875902	3	1	109	1	0	0	0	0	1	0	0	0	4850	971	34	4	151	4	DUSP10	1	221875902	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	21007289	221875902	27374719	12	106516											
LEFTY1	10637	broad.mit.edu	37	chr1	226109508	226109508	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcctgcctgccagcccaTcttgctgcctgggttcctag	10	16	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226109508	C	C	226109508	1	2	109	0	1	0	0	0	0	0	0	0	8787	1450	50	5		5	LEFTY1	1	226109508	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08	4233606	226109508	23141113	13	106517											
TARBP1	6894	broad.mit.edu	37	chr1	234536895	234536895	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaggattaaagatacaaTagagaatttacaaatgatat	6	4	1	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234536895	C	C	234536895	1	2	109	0	1	0	0	0	0	0	0	0	15674	1421	49	5		5	TARBP1	1	234536895	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08	8427387	234536895	14713726	14	106518											
PLD5	200150	broad.mit.edu	37	chr1	242451594	242451594	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgagtttgaggagtggaGgagcagaatactaaggagtg	17	3	0	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242451594	A	A	242451594	1	1	109	0	1	0	0	0	0	0	0	0	12144	1015	35	4		4	PLD5	1	242451594	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	7914699	242451594	6799027	15	106519											
OR6F1	343169	broad.mit.edu	37	chr1	247875225	247875225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaactggagtcaccacagtgTtcaggacgtggacagctttg	12	9	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875225	A	A	247875225	3	1	109	1	0	0	0	0	1	0	0	0	11295	1725	60	5	97	5	OR6F1	1	247875225	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	5423631	247875225	1375396	16	106520											
LRP1B	53353	broad.mit.edu	37	chr2	141598530	141598530	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgtggcttatcgattcCatggataattgaggttttca	9	7	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141598530	A	A	141598530	4	1	109	1	0	0	0	0	0	1	0	0	9042	603	21	2	8976	2	LRP1B	2	141598530	Nonsense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08		141598530	101600843	17	106521											
TTN	7273	broad.mit.edu	37	chr2	179413470	179413470	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctaaggttagagtctggTttgctccacacagctgtagg	13	8	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179413470	C	C	179413470	2	2	109	1	0	0	0	0	0	0	0	1	16861	1722	60	5		5	TTN	2	179413470	Silent	SNP	T	TCGA-44-2661-01A-01D-1105-08	37814940	179413470	63785903	18	106522											
RNF25	64320	broad.mit.edu	37	chr2	219529102	219529102	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgatttgacctggtccctgGaatcttctcacatatgtgct	8	11	2	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219529102	C	C	219529102	3	2	109	1	0	0	0	0	1	0	0	0	13596	1174	41	4	425	4	RNF25	2	219529102	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	40115632	219529102	23670271	19	106523											
ACCN4	55515	broad.mit.edu	37	chr2	220396414	220396414	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccctcagcagggagcagGgaacttcggagttgccttgg	16	10	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220396414	A	A	220396414	1	1	109	0	1	0	0	0	0	0	0	0	131	1247	43	4		4	ACCN4	2	220396414	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	867312	220396414	22802959	20	106524											
SRGAP3	9901	broad.mit.edu	37	chr3	9121643	9121643	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacctctgttttgcttccCtccagctctggtgatgaaga	9	12	2	4			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9121643	T	T	9121643	1	4	109	0	1	0	0	0	0	0	0	0	15265	696	24	4		4	SRGAP3	3	9121643	Intron	SNP	C	TCGA-44-2661-01A-01D-1105-08		9121643	188900787	21	106525											
VGLL4	9686	broad.mit.edu	37	chr3	11599950	11599950	+	3'UTR	DEL	T	-	-													cccccaccccacccccatgaTttttttttttttaagtactg							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11599950	-	-	11599950	6	5	109	0	1	1	0	1	0	0	0	0	17288	1508	52	0		0	VGLL4	3	11599950	3'UTR	DEL	T	TCGA-44-2661-01A-01D-1105-08	2478307	11599950	186422480	22	106526											
ITGA9	3680	broad.mit.edu	37	chr3	37670627	37670627	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaactgtgaaatgctctacGactgtcagccaggattagta	9	8	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37670627	T	T	37670627	1	4	109	0	1	0	0	0	0	0	0	0	7953	1073	37	3		3	ITGA9	3	37670627	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	26070677	37670627	160351803	23	106527											
TTC21A	199223	broad.mit.edu	37	chr3	39150708	39150708	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggagtcctcaaagaaggtAaggacttggcagtgttggtc	14	6	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39150708	G	G	39150708	1	3	109	0	1	0	0	0	0	0	0	0	16813	377	13	5		5	TTC21A	3	39150708	Intron	SNP	A	TCGA-44-2661-01A-01D-1105-08	1480081	39150708	158871722	24	106528											
DNAH1	25981	broad.mit.edu	37	chr3	52429049	52429049	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggactttgtggccaccaacCtggagccacgcttcattgaa	10	12	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52429049	G	G	52429049	3	3	109	1	0	0	0	0	1	0	0	0	4637	680	24	4	11208	4	DNAH1	3	52429049	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	13278341	52429049	145593381	25	106529											
TMF1	7110	broad.mit.edu	37	chr3	69092066	69092069	+	Intron	DEL	AATA	-	-													ttttatgtttttgatttcctAataaaaaagaaatctgtgaa							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69092069	-	-	69092066	6	5	109	0	1	1	0	1	0	0	0	0	16351	377	13	0		0	TMF1	3	69092066	Intron	DEL	AATA	TCGA-44-2661-01A-01D-1105-08	16663017	69092066	128930364	26	106530											
CCDC80	151887	broad.mit.edu	37	chr3	112324262	112324262	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctaaggttacatatttctGctcagtaagggtatccatgg	10	7	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112324262	A	A	112324262	1	1	109	0	1	0	0	0	0	0	0	0	2882	1334	46	4		4	CCDC80	3	112324262	3'UTR	SNP	G	TCGA-44-2661-01A-01D-1105-08	43232196	112324262	85698168	27	106531											
COL6A6	131873	broad.mit.edu	37	chr3	130284289	130284289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcatagagggcgccagCgacacccagttggaaaagat	14	10	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130284289	A	A	130284289	3	1	109	1	0	0	0	0	1	0	0	0	3735	767	27	3	1123	3	COL6A6	3	130284289	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	17960027	130284289	67738141	28	106532											
STAG1	10274	broad.mit.edu	37	chr3	136342081	136342081	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatgggcagtagtttcattAgttgaatccctagaaaatgt	10	5	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136342081	G	G	136342081	2	3	109	1	0	0	0	0	0	0	0	1	15360	407	15	5		5	STAG1	3	136342081	Silent	SNP	A	TCGA-44-2661-01A-01D-1105-08	6057792	136342081	61680349	29	106533											
GOLIM4	27333	broad.mit.edu	37	chr3	167754847	167754851	+	Intron	DEL	GGTAC	-	-													cattcatagatgggcatttgGgtacactgtaaaactagaca							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167754851	-	-	167754847	6	5	109	0	1	1	0	1	0	0	0	0	6630	1247	43	0		0	GOLIM4	3	167754847	Intron	DEL	GGTAC	TCGA-44-2661-01A-01D-1105-08	31412766	167754847	30267583	30	106534											
NLGN1	22871	broad.mit.edu	37	chr3	173997033	173997033	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagtgattttgactttgcTgtttcaaattttgttgataa	8	4	1	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173997033	C	C	173997033	2	2	109	1	0	0	0	0	0	0	0	1	10556	1567	55	5		5	NLGN1	3	173997033	Silent	SNP	T	TCGA-44-2661-01A-01D-1105-08	6242186	173997033	24025397	31	106535											
KLHL24	54800	broad.mit.edu	37	chr3	183388879	183388879	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagcagcgtagaatgttatGattccttttcaaatcgatgg	9	6	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183388879	A	A	183388879	3	1	109	1	0	0	0	0	1	0	0	0	8450	1290	45	4	1296	4	KLHL24	3	183388879	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	9391846	183388879	14633551	32	106536											
HTR3D	200909	broad.mit.edu	37	chr3	183756837	183756838	+	3'UTR	INS	-	GTCAGTCCAAATT	GTCAGTCCAAATT													gaaaccagtcaggctctcagINStcagccttgtggccctgtca					rs66883074		TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTCAGTCCAAATT	183756838	GTCAGTCCAAATT	GTCAGTCCAAATT	183756837	6	5	109	0	1	1	1	0	0	0	0	0	7517	1044	36	0		0	HTR3D	3	183756837	3'UTR	INS	-	TCGA-44-2661-01A-01D-1105-08	367958	183756837	14265593	33	106537											
ABCF3	55324	broad.mit.edu	37	chr3	183909004	183909004	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcacgtcatcttcagtcgCctctctgtgtctgctgatct	8	13	6	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183909004	T	T	183909004	2	4	109	1	0	0	0	0	0	0	0	1	67	726	26	4		4	ABCF3	3	183909004	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	152167	183909004	14113426	34	106538											
KIAA0922	23240	broad.mit.edu	37	chr4	154555427	154555427	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacgattacaatgcctttcCagaaggtaagggctcttcag	10	9	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154555427	T	T	154555427	3	4	109	1	0	0	0	0	1	0	0	0	8271	594	21	4	4542	4	KIAA0922	4	154555427	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08		154555427	36598849	35	106539											
SPEF2	79925	broad.mit.edu	37	chr5	35727857	35727857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagatacatcacctgttGcaatagtgccacagccacct	6	14	1	1	rs115170604	by1000genomes	TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35727857	T	T	35727857	3	4	109	1	0	0	0	0	1	0	0	0	15153	1319	46	3	3098	3	SPEF2	5	35727857	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08		35727857	145187403	36	106540											
GPR98	84059	broad.mit.edu	37	chr5	90136558	90136558	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatctttaaattcatttcCtaaacgcttccagattgtcc	5	10	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90136558	G	G	90136558	3	3	109	1	0	0	0	0	1	0	0	0	6787	681	24	4	17085	4	GPR98	5	90136558	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	54408701	90136558	90778702	37	106541											
PITX1	5307	broad.mit.edu	37	chr5	134364489	134364489	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgttgtactggcacgCgttgaggcccgaggccgggc	16	12	1	1	rs140746945		TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134364489	T	T	134364489	3	4	109	1	0	0	0	0	1	0	0	0	12049	768	27	4	23	4	PITX1	5	134364489	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	44227931	134364489	46550771	38	106542											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139905682	139905683	+	Frame_Shift_Del	DEL	AG	-	-													caaatgtgtttgggaaaaaaAgggccaatgtggtgacaact							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139905683	-	-	139905682	7	5	109	1	0	1	0	1	0	0	0	0	629	63	3	0	4696	0	ANKHD1-EIF4EBP3	5	139905682	Frame_Shift_Del	DEL	AG	TCGA-44-2661-01A-01D-1105-08	5541193	139905682	41009578	39	106543											
PCDHA2	56146	broad.mit.edu	37	chr5	140174709	140174709	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcgcgcaggacctggggCtggagctggaggagctggtg	20	9	0	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140174709	T	T	140174709	2	4	109	1	0	0	0	0	0	0	0	1	11618	796	28	4		4	PCDHA2	5	140174709	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	269027	140174709	40740551	40	106544											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712646	140712646	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcaccccagtctttacttGaagacaaaaaggaaccattt	6	11	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140712646	C	C	140712646	3	2	109	1	0	0	0	0	1	0	0	0	11644	1291	45	4	2397	4	PCDHGA1	5	140712646	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	537937	140712646	40202614	41	106545											
G3BP1	10146	broad.mit.edu	37	chr5	151166212	151166212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcctagtcccctgctgGtcgggcgggaatttgtgaga	15	9	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151166212	T	T	151166212	3	4	109	1	0	0	0	0	1	0	0	0	6201	1261	44	3	33	3	G3BP1	5	151166212	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	10453566	151166212	29749048	42	106546											
GRK6	2870	broad.mit.edu	37	chr5	176859361	176859361	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagccaccagagccccgtgtCaggcacaggagtgaccacag	13	14	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176859361	G	G	176859361	1	3	109	0	1	0	0	0	0	0	0	0	6859	841	29	4		4	GRK6	5	176859361	Intron	SNP	C	TCGA-44-2661-01A-01D-1105-08	25693149	176859361	4055899	43	106547											
EXOC2	55770	broad.mit.edu	37	chr6	617609	617609	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatttgagatctctacttTgataaaaacagaccgagtgt	7	8	1	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	617609	C	C	617609	1	2	109	0	1	0	0	0	0	0	0	0	5344	1827	63	5		5	EXOC2	6	617609	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08		617609	170497458	44	106548											
GMNN	51053	broad.mit.edu	37	chr6	24781651	24781651	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaatgaaaaaccacctaAtttcttgttaattaaatcaa	2	7	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24781651	C	C	24781651	1	2	109	0	1	0	0	0	0	0	0	0	6557	116	4	5		5	GMNN	6	24781651	Intron	SNP	A	TCGA-44-2661-01A-01D-1105-08	24164042	24781651	146333416	45	106549											
HIST1H1C	3006	broad.mit.edu	37	chr6	26056605	26056605	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccttcttctttacaggggCcttctccgcaggaggcgcgg	13	14	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26056605	G	G	26056605	3	3	109	1	0	0	0	0	1	0	0	0	7191	739	26	4	593	4	HIST1H1C	6	26056605	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	1274954	26056605	145058462	46	106550											
TTBK1	84630	broad.mit.edu	37	chr6	43221466	43221466	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagtactgcccccacacGcctctctgttccctcctcca	6	19	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43221466	A	A	43221466	1	1	109	0	1	0	0	0	0	0	0	0	16802	1102	38	4		4	TTBK1	6	43221466	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	17164861	43221466	127893601	47	106551											
TMEM181	57583	broad.mit.edu	37	chr6	159052440	159052440	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtaagtccctgtccgttaGaaggccggcacaccttgggc	14	12	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159052440	A	A	159052440	1	1	109	0	1	0	0	0	0	0	0	0	16223	957	33	4		4	TMEM181	6	159052440	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	115830974	159052440	12062627	48	106552											
PSPH	5723	broad.mit.edu	37	chr7	56088991	56088991	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaagatcccaccttgccTactaagccaatctaatttgt	5	11	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56088991	C	C	56088991	1	2	109	0	1	0	0	0	0	0	0	0	12823	1537	53	5		5	PSPH	7	56088991	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08		56088991	103049672	49	106553											
ASL	435	broad.mit.edu	37	chr7	65546942	65546942	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggagaaggcagggctcctCaccaaggccgagatggacca	14	12	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65546942	T	T	65546942	2	4	109	1	0	0	0	0	0	0	0	1	1048	813	29	4		4	ASL	7	65546942	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	9457951	65546942	93591721	50	106554											
DYNC1I1	1780	broad.mit.edu	37	chr7	95499163	95499163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcaaggaatgcctcccCtctctaagcatttattcttt	5	12	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95499163	A	A	95499163	1	1	109	0	1	0	0	0	0	0	0	0	4882	696	24	2		2	DYNC1I1	7	95499163	Intron	SNP	C	TCGA-44-2661-01A-01D-1105-08	29952221	95499163	63639500	51	106555											
PTPRN2	5799	broad.mit.edu	37	chr7	157944172	157944175	+	Intron	DEL	CTCT	-	-													acccgcctttctattcctgcCtctccctgcccacaccgccc					rs62480241		TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	157944175	-	-	157944172	6	5	109	0	1	1	0	1	0	0	0	0	12916	696	24	0		0	PTPRN2	7	157944172	Intron	DEL	CTCT	TCGA-44-2661-01A-01D-1105-08	62445009	157944172	1194491	52	106556											
PCM1	5108	broad.mit.edu	37	chr8	17818030	17818030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgaaagtactcttttttGtttttgtttttctttttttt	4	4	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17818030	T	T	17818030	1	4	109	0	1	0	0	0	0	0	0	0	11678	1392	48	3		3	PCM1	8	17818030	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08		17818030	128545992	53	106557											
WRN	7486	broad.mit.edu	37	chr8	30977835	30977835	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcattcattacggtgctcCtaaggacatggaatcatatt	8	8	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30977835	T	T	30977835	3	4	109	1	0	0	0	0	1	0	0	0	17529	681	24	4	2603	4	WRN	8	30977835	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	13159805	30977835	115386187	54	106558											
PRKDC	5591	broad.mit.edu	37	chr8	48710830	48710830	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggctcaaagtctcctctgGataccgttctataatctgaa	8	10	5	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48710830	C	C	48710830	3	2	109	1	0	0	0	0	1	0	0	0	12627	1174	41	4	2016	4	PRKDC	8	48710830	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	17732995	48710830	97653192	55	106559											
TEK	7010	broad.mit.edu	37	chr9	27204929	27204929	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagcggacctcggagggGggaagatgctgcttatagcc	15	11	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27204929	A	A	27204929	3	1	109	1	0	0	0	0	1	0	0	0	15873	1232	43	4	2284	4	TEK	9	27204929	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08		27204929	114008502	56	106560											
C9orf11	54586	broad.mit.edu	37	chr9	27289707	27289707	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattgatctttatcatccatGaccactgctgttccatttat	4	10	2	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27289707	A	A	27289707	2	1	109	1	0	0	0	0	0	0	0	1	2474	1277	45	4		4	C9orf11	9	27289707	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08	84778	27289707	113923724	57	106561											
STOML2	30968	broad.mit.edu	37	chr9	35102793	35102793	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccagaggaggcgcggcgcgGagcgcggccagaagccagta	18	12	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35102793	C	C	35102793	3	2	109	1	0	0	0	0	1	0	0	0	15432	1174	41	4	1033	4	STOML2	9	35102793	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	7813086	35102793	106110638	58	106562											
RNF38	152006	broad.mit.edu	37	chr9	36353229	36353229	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaactgcaagggagctgatgGaggtaatgttggggggtggg	21	3	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36353229	C	C	36353229	3	2	109	1	0	0	0	0	1	0	0	0	13601	1174	41	4	562	4	RNF38	9	36353229	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	1250436	36353229	104860202	59	106563											
VPS13A	23230	broad.mit.edu	37	chr9	79946995	79946995	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattgggaactgcctcacctGaaaatgaattcaacatacca	6	10	2	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79946995	T	T	79946995	4	4	109	1	0	0	0	0	0	1	0	0	17316	1291	45	3	6243	3	VPS13A	9	79946995	Nonsense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	43593766	79946995	61266436	60	106564											
COL27A1	85301	broad.mit.edu	37	chr9	116930259	116930259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtcgtccacctcgggtccCggcgctcagtggccttcgac	13	17	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116930259	A	A	116930259	2	1	109	1	0	0	0	0	0	0	0	1	3717	643	23	1		1	COL27A1	9	116930259	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	36983264	116930259	24283172	61	106565											
RALGDS	5900	broad.mit.edu	37	chr9	136004743	136004743	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtggggagtgggccctgcggGaggccctctgccagtgtgct	19	11	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136004743	C	C	136004743	1	2	109	0	1	0	0	0	0	0	0	0	13124	1189	41	4		4	RALGDS	9	136004743	5'UTR	SNP	G	TCGA-44-2661-01A-01D-1105-08	19074484	136004743	5208688	62	106566											
TRAF2	7186	broad.mit.edu	37	chr9	139802434	139802434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcggacaccaagccagcGctacatcgccttgtgtcccc	9	17	0	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139802434	T	T	139802434	1	4	109	0	1	0	0	0	0	0	0	0	16562	1102	38	3		3	TRAF2	9	139802434	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	3797691	139802434	1410997	63	106567											
UAP1L1	91373	broad.mit.edu	37	chr9	139974384	139974384	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgggtgtgctcagaagtGgggacagagcccccagcggt	17	10	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139974384	A	A	139974384	1	1	109	0	1	0	0	0	0	0	0	0	16952	1363	47	4		4	UAP1L1	9	139974384	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	171950	139974384	1239047	64	106568											
LARP4B	23185	broad.mit.edu	37	chr10	876909	876909	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatctcctttaaatagtgcTtctacttcctacaggaaata	4	9	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	876909	G	G	876909	3	3	109	1	0	0	0	0	1	0	0	0	8703	1606	56	5	1497	5	LARP4B	10	876909	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08		876909	134657838	65	106569											
PBLD	64081	broad.mit.edu	37	chr10	70066629	70066629	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaagctgtttttgcaagttCtcaaaattgctggtagcctg	10	8	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70066629	A	A	70066629	1	1	109	0	1	0	0	0	0	0	0	0	11583	928	32	3		3	PBLD	10	70066629	5'UTR	SNP	C	TCGA-44-2661-01A-01D-1105-08	69189720	70066629	65468118	66	106570											
GLUD1	2746	broad.mit.edu	37	chr10	88820607	88820607	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgattgaaaatcacaatTaatagctgcaccagagtttt	6	7	1	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88820607	G	G	88820607	1	3	109	0	1	0	0	0	0	0	0	0	6540	1769	61	5		5	GLUD1	10	88820607	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08	18753978	88820607	46714140	67	106571											
PLCE1	51196	broad.mit.edu	37	chr10	95931189	95931189	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaagcatccatctcagcgtCgattcttaccactcagaatg	6	13	3	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95931189	A	A	95931189	4	1	109	1	0	0	0	0	0	1	0	0	12129	893	31	3	2041	3	PLCE1	10	95931189	Nonsense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	7110582	95931189	39603558	68	106572											
ZNF408	79797	broad.mit.edu	37	chr11	46726804	46726804	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggcatttgcggctccaCaccggggagcgtccttaccg	14	14	0	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46726804	T	T	46726804	2	4	109	1	0	0	0	0	0	0	0	1	18015	477	17	4		4	ZNF408	11	46726804	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08		46726804	88279712	69	106573											
AHNAK	79026	broad.mit.edu	37	chr11	62289394	62289394	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtccactttggggcccttGatgtcaacttcagggccctt	10	12	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62289394	A	A	62289394	2	1	109	1	0	0	0	0	0	0	0	1	414	1280	45	4		4	AHNAK	11	62289394	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08	15562590	62289394	72717122	70	106574											
TECTA	7007	broad.mit.edu	37	chr11	120996044	120996044	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacttctttgcctgtcaccTtagacttggggacagtgaaa	10	9	2	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120996044	G	G	120996044	3	3	109	1	0	0	0	0	1	0	0	0	15869	1606	56	5	1263	5	TECTA	11	120996044	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	58706650	120996044	14010472	71	106575											
FLI1	2313	broad.mit.edu	37	chr11	128680615	128680615	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacaaatttgacttccacgGcattgcccaggctctgcagc	8	13	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128680615	A	A	128680615	3	1	109	1	0	0	0	0	1	0	0	0	5981	1203	42	4	1125	4	FLI1	11	128680615	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	7684571	128680615	6325901	72	106576											
PZP	5858	broad.mit.edu	37	chr12	9302262	9302262	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactagggaccatgctaaatCtgtctagtcactttactact	6	10	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9302262	A	A	9302262	1	1	109	0	1	0	0	0	0	0	0	0	12977	928	32	3		3	PZP	12	9302262	Intron	SNP	C	TCGA-44-2661-01A-01D-1105-08		9302262	124549633	73	106577											
GRIN2B	2904	broad.mit.edu	37	chr12	13769453	13769453	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttccactcagagggtccaCactttccacaatgacaaatg	8	12	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13769453	T	T	13769453	3	4	109	1	0	0	0	0	1	0	0	0	6846	478	17	4	3226	4	GRIN2B	12	13769453	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	4467191	13769453	120082442	74	106578											
ACVR1B	91	broad.mit.edu	37	chr12	52377803	52377803	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataatggcacctggacacagCtgtggcttgtttctgactat	10	9	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52377803	G	G	52377803	3	3	109	1	0	0	0	0	1	0	0	0	221	796	28	4	977	4	ACVR1B	12	52377803	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	38608350	52377803	81474092	75	106579											
TENC1	23371	broad.mit.edu	37	chr12	53455478	53455478	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctggcctcagactcttacCgccaccacagctgtcagggc	9	18	3	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53455478	G	G	53455478	1	3	109	0	1	0	0	0	0	0	0	0	15880	667	23	4		4	TENC1	12	53455478	Intron	SNP	C	TCGA-44-2661-01A-01D-1105-08	1077675	53455478	80396417	76	106580											
PTPRB	5787	broad.mit.edu	37	chr12	70938424	70938424	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcatcaaagagctgtgTaaaagctcgaatgctgattc	9	9	2	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70938424	C	C	70938424	3	2	109	1	0	0	0	0	1	0	0	0	12904	1638	57	5	1292	5	PTPRB	12	70938424	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	17482946	70938424	62913471	77	106581											
CEP290	80184	broad.mit.edu	37	chr12	88486598	88486598	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accttctgtgcatccaaattGattttggtaagctaaggaaa	8	7	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88486598	T	T	88486598	2	4	109	1	0	0	0	0	0	0	0	1	3283	1280	45	3		3	CEP290	12	88486598	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08	17548174	88486598	45365297	78	106582											
AKAP11	11215	broad.mit.edu	37	chr13	42873654	42873654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagtgaatgtcctgggaCataaagaactaccttctgtg	9	10	2	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42873654	A	A	42873654	3	1	109	1	0	0	0	0	1	0	0	0	447	478	17	3	794	3	AKAP11	13	42873654	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08		42873654	72296224	79	106583											
DCT	1638	broad.mit.edu	37	chr13	95121039	95121040	+	Frame_Shift_Ins	INS	-	A	A													gaataataatggagccacacINSaaaaaaatcataaacactgc							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95121040	A	A	95121039	7	5	109	1	0	1	1	0	0	0	0	0	4337	478	17	0	1138	0	DCT	13	95121039	Frame_Shift_Ins	INS	-	TCGA-44-2661-01A-01D-1105-08	52247385	95121039	20048839	80	106584											
FAM179B	23116	broad.mit.edu	37	chr14	45433195	45433195	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcttgtagatagcaaacGcagggtacgccaagcagctt	11	10	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45433195	A	A	45433195	3	1	109	1	0	0	0	0	1	0	0	0	5551	1087	38	4	1573	4	FAM179B	14	45433195	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08		45433195	61916345	81	106585											
HHIPL1	84439	broad.mit.edu	37	chr14	100123137	100123137	+	Intron	DEL	A	-	-													agaaaagaaaagaaagaaagAaagaaagaaagaaagaaaga							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100123137	-	-	100123137	6	5	109	0	1	1	0	1	0	0	0	0	7160	261	9	0		0	HHIPL1	14	100123137	Intron	DEL	A	TCGA-44-2661-01A-01D-1105-08	54689942	100123137	7226403	82	106586											
PPIB	5479	broad.mit.edu	37	chr15	64455120	64455120	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccggcagcagcaggaagaaGacggaccccgcgatgagggc	16	13	0	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64455120	C	C	64455120	2	2	109	1	0	0	0	0	0	0	0	1	12420	929	33	4		4	PPIB	15	64455120	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08		64455120	38076272	83	106587											
KIAA1024	23251	broad.mit.edu	37	chr15	79749775	79749775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattctccccattgcttatgCggcaaaacaaaatgggctca	7	11	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79749775	A	A	79749775	3	1	109	1	0	0	0	0	1	0	0	0	8275	768	27	3	1288	3	KIAA1024	15	79749775	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	15294655	79749775	22781617	84	106588											
KIAA1199	57214	broad.mit.edu	37	chr15	81235319	81235319	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaccccagttcggaggatGgcatccaggtggtggtgatt	15	8	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81235319	A	A	81235319	3	1	109	1	0	0	0	0	1	0	0	0	8283	1348	47	4	3835	4	KIAA1199	15	81235319	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	1485544	81235319	21296073	85	106589											
FSD2	123722	broad.mit.edu	37	chr15	83451620	83451620	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctttgcaagtatctaggTtttctccacagctgaccagt	8	10	3	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83451620	A	A	83451620	3	1	109	1	0	0	0	0	1	0	0	0	6131	1725	60	5	1396	5	FSD2	15	83451620	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	2216301	83451620	19079772	86	106590											
ACAN	176	broad.mit.edu	37	chr15	89400783	89400783	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtggacttccatctggatTcccaactgtttccctagtgg	9	11	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89400783	A	A	89400783	3	1	109	1	0	0	0	0	1	0	0	0	117	1783	62	5	5009	5	ACAN	15	89400783	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	5949163	89400783	13130609	87	106591											
GSPT1	2935	broad.mit.edu	37	chr16	11969965	11969965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttccacctcctcaataCaggtatgaatatgcagcacc	5	12	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11969965	A	A	11969965	3	1	109	1	0	0	0	0	1	0	0	0	6892	478	17	3	255	3	GSPT1	16	11969965	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08		11969965	78384788	88	106592											
SLC5A2	6524	broad.mit.edu	37	chr16	31499014	31499014	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcaccccgtgaccggggaTctgccgtggcccgcgctgct	15	17	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31499014	C	C	31499014	2	2	109	1	0	0	0	0	0	0	0	1	14779	1432	50	5		5	SLC5A2	16	31499014	Silent	SNP	T	TCGA-44-2661-01A-01D-1105-08	19529049	31499014	58855739	89	106593											
C16orf58	64755	broad.mit.edu	37	chr16	31502241	31502241	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctcggtcttccagccgGcatcctgcagtcctggggag	13	14	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31502241	A	A	31502241	3	1	109	1	0	0	0	0	1	0	0	0	1836	1203	42	4	88	4	C16orf58	16	31502241	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	3227	31502241	58852512	90	106594											
CDH8	1006	broad.mit.edu	37	chr16	61859156	61859156	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtgttaatctcacacaTgcacacatacacacaagcat	5	11	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61859156	C	C	61859156	1	2	109	0	1	0	0	0	0	0	0	0	3146	1479	51	5		5	CDH8	16	61859156	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08	30356915	61859156	28495597	91	106595											
FUK	197258	broad.mit.edu	37	chr16	70512580	70512580	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcctctgggggggtcaGggcactgggagcgagtattc	18	9	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70512580	A	A	70512580	1	1	109	0	1	0	0	0	0	0	0	0	6156	1015	35	4		4	FUK	16	70512580	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	8653424	70512580	19842173	92	106596											
PABPN1L	390748	broad.mit.edu	37	chr16	88931363	88931364	+	Intron	INS	-	GGGAG	GGGAG													cataactgaggggaggggcaINSgggaggggaggggtgaggct					rs141563331	by1000genomes	TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGGAG	88931364	GGGAG	GGGAG	88931363	6	5	109	0	1	1	1	0	0	0	0	0	11463	203	7	0		0	PABPN1L	16	88931363	Intron	INS	-	TCGA-44-2661-01A-01D-1105-08	18418783	88931363	1423390	93	106597											
TRIM16	10626	broad.mit.edu	37	chr17	15535856	15535856	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctggagctttttcttatAgttctccagcaactggatta	7	10	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15535856	G	G	15535856	3	3	109	1	0	0	0	0	1	0	0	0	16615	420	15	5	724	5	TRIM16	17	15535856	Missense_Mutation	SNP	A	TCGA-44-2661-01A-01D-1105-08		15535856	65659354	94	106598											
SHMT1	6470	broad.mit.edu	37	chr17	18250892	18250892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccatgggtcaggtggcccCcatccggaaggtccaggccc	13	16	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18250892	T	T	18250892	3	4	109	1	0	0	0	0	1	0	0	0	14398	623	22	4	1046	4	SHMT1	17	18250892	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	2715036	18250892	62944318	95	106599											
CYTSB	92521	broad.mit.edu	37	chr17	20160708	20160708	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatttgagaatgaagtatgAtggcagtcaagagctgcttc	12	5	1	4			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20160708	G	G	20160708	1	3	109	0	1	0	0	0	0	0	0	0	4243	348	12	5		5	CYTSB	17	20160708	Intron	SNP	A	TCGA-44-2661-01A-01D-1105-08	1909816	20160708	61034502	96	106600											
MYO18A	399687	broad.mit.edu	37	chr17	27448618	27448618	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccaagaaccagcaggctggGgccagcatacgtgtgcagca	14	12	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27448618	C	C	27448618	3	2	109	1	0	0	0	0	1	0	0	0	10159	1232	43	4	4998	4	MYO18A	17	27448618	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	7287910	27448618	53746592	97	106601											
STAT5A	6776	broad.mit.edu	37	chr17	40441527	40441527	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccatcgaggtccggcactActtggcccagtggattgaga	12	13	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40441527	T	T	40441527	3	4	109	1	0	0	0	0	1	0	0	0	15386	391	14	5	100	5	STAT5A	17	40441527	Missense_Mutation	SNP	A	TCGA-44-2661-01A-01D-1105-08	12992909	40441527	40753683	98	106602											
MRPL10	124995	broad.mit.edu	37	chr17	45901636	45901636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgacagaatccttctcgcGttgctctctgatgtactggt	9	11	2	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45901636	A	A	45901636	3	1	109	1	0	0	0	0	1	0	0	0	9869	1145	40	4	68	4	MRPL10	17	45901636	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	5460109	45901636	35293574	99	106603											
TTYH2	94015	broad.mit.edu	37	chr17	72248464	72248464	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctggccgccctcgcctTctccaccatgatctgtgcag	8	18	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72248464	C	C	72248464	3	2	109	1	0	0	0	0	1	0	0	0	16866	1783	62	5	1250	5	TTYH2	17	72248464	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	26346828	72248464	8946746	100	106604											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74625395	74625395	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttctctgacaccgtcctgGaggccgtcagcttcctggtc	11	15	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74625395	T	T	74625395	3	4	109	1	0	0	0	0	1	0	0	0	15341	1174	41	3	1304	3	ST6GALNAC1	17	74625395	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	2376931	74625395	6569815	101	106605											
USP36	57602	broad.mit.edu	37	chr17	76794434	76794434	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacccctacacacatacacgGcacacacacccccacctcac	2	23	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76794434	C	C	76794434	1	2	109	0	1	0	0	0	0	0	0	0	17194	1218	42	4		4	USP36	17	76794434	3'UTR	SNP	G	TCGA-44-2661-01A-01D-1105-08	2169039	76794434	4400776	102	106606											
THEG	51298	broad.mit.edu	37	chr19	375610	375610	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccctccccccactgccaGgggctgagccctaccccacc	8	23	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	375610	A	A	375610	1	1	109	0	1	0	0	0	0	0	0	0	15980	1015	35	4		4	THEG	19	375610	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08		375610	58753373	103	106607											
GPR108	56927	broad.mit.edu	37	chr19	6733061	6733061	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccatgagccagtggatcttGaagacgctgtacctggtggg	15	9	1	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6733061	T	T	6733061	3	4	109	1	0	0	0	0	1	0	0	0	6689	1281	45	3	797	3	GPR108	19	6733061	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	6357451	6733061	52395922	104	106608											
EVI5L	115704	broad.mit.edu	37	chr19	7914846	7914846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgcccctccccgctgcGctgccctgagcccccccacc	9	23	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7914846	T	T	7914846	1	4	109	0	1	0	0	0	0	0	0	0	5332	1102	38	3		3	EVI5L	19	7914846	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	1181785	7914846	51214137	105	106609											
CDKN2D	1032	broad.mit.edu	37	chr19	10677773	10677773	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggccctgcaggatgtccacGaggtcctgagcccctctctg	12	15	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10677773	A	A	10677773	2	1	109	1	0	0	0	0	0	0	0	1	3196	1045	37	4		4	CDKN2D	19	10677773	Silent	SNP	G	TCGA-44-2661-01A-01D-1105-08	2762927	10677773	48451210	106	106610											
EMR2	30817	broad.mit.edu	37	chr19	14866619	14866619	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatctgcttctcaggttcCaggaccagaggggcctcagc	12	13	3	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14866619	A	A	14866619	2	1	109	1	0	0	0	0	0	0	0	1	5147	581	21	2		2	EMR2	19	14866619	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	4188846	14866619	44262364	107	106611											
CPAMD8	27151	broad.mit.edu	37	chr19	17085881	17085881	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaacttagaagggggcagAgggatctgagaccacctctc	14	9	2	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17085881	C	C	17085881	1	2	109	0	1	0	0	0	0	0	0	0	3827	319	11	5		5	CPAMD8	19	17085881	Intron	SNP	A	TCGA-44-2661-01A-01D-1105-08	2219262	17085881	42043102	108	106612											
FCHO1	23149	broad.mit.edu	37	chr19	17892642	17892642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccaggtacccagtgatGggcagacagggcccgtggga	16	12	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17892642	T	T	17892642	1	4	109	0	1	0	0	0	0	0	0	0	5844	1363	47	2		2	FCHO1	19	17892642	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	806761	17892642	41236341	109	106613											
GMIP	51291	broad.mit.edu	37	chr19	19751158	19751158	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttcatggtgctcttagCaaactccagctctgggggaa	11	10	4	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751158	T	T	19751158	3	4	109	1	0	0	0	0	1	0	0	0	6555	710	25	4	2600	4	GMIP	19	19751158	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	1858516	19751158	39377825	110	106614											
PLEKHF1	79156	broad.mit.edu	37	chr19	30164791	30164791	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagatcaacagccagcgcatCgcggcagtggagagctgctt	14	11	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30164791	T	T	30164791	2	4	109	1	0	0	0	0	0	0	0	1	12161	874	31	4		4	PLEKHF1	19	30164791	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	10413633	30164791	28964192	111	106615											
CCDC123	84902	broad.mit.edu	37	chr19	33417746	33417746	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagtgctgggattacagAcatgagccaccgcgcctggc	12	13	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33417746	G	G	33417746	1	3	109	0	1	0	0	0	0	0	0	0	2785	290	10	5		5	CCDC123	19	33417746	Intron	SNP	A	TCGA-44-2661-01A-01D-1105-08	3252955	33417746	25711237	112	106616											
ZNF585B	92285	broad.mit.edu	37	chr19	37676879	37676879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtattgcattcataaggCttctccccagtatggattct	7	10	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37676879	A	A	37676879	3	1	109	1	0	0	0	0	1	0	0	0	18145	796	28	3	753	3	ZNF585B	19	37676879	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	4259133	37676879	21452104	113	106617											
ATP1A3	478	broad.mit.edu	37	chr19	42472957	42472957	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgccctgctggaagacCgagttcctccgggtcttgca	11	13	2	1	rs150417636		TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42472957	T	T	42472957	2	4	109	1	0	0	0	0	0	0	0	1	1134	639	23	4		4	ATP1A3	19	42472957	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	4796078	42472957	16656026	114	106618											
GPR4	2828	broad.mit.edu	37	chr19	46094725	46094725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggagctcacggccacggCggtcttgacgcggcgcaggc	16	15	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46094725	A	A	46094725	3	1	109	1	0	0	0	0	1	0	0	0	6759	768	27	3	692	3	GPR4	19	46094725	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	3621768	46094725	13034258	115	106619											
ZNF468	90333	broad.mit.edu	37	chr19	53344104	53344104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctacgatggattataagCgatgatgtctgaccgaaggt	12	7	1	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53344104	A	A	53344104	2	1	109	1	0	0	0	0	0	0	0	1	18055	755	27	3		3	ZNF468	19	53344104	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	7249379	53344104	5784879	116	106620											
LAIR2	3904	broad.mit.edu	37	chr19	55020300	55020300	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggctcctcagctggtcaGtagcagggccctcagctgga	13	15	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55020300	A	A	55020300	1	1	109	0	1	0	0	0	0	0	0	0	8675	1044	36	4		4	LAIR2	19	55020300	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	1676196	55020300	4108683	117	106621											
ZNF133	7692	broad.mit.edu	37	chr20	18295923	18295923	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaccctggagtgatcaagCagaaggtcctgagggagaag	16	7	1	5			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18295923	T	T	18295923	3	4	109	1	0	0	0	0	1	0	0	0	17849	710	25	4	435	4	ZNF133	20	18295923	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08		18295923	44729597	118	106622											
CST4	1472	broad.mit.edu	37	chr20	23667851	23667851	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaaggtctgcacacaggaGaaaacaggaagcacggacag	12	10	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23667851	C	C	23667851	1	2	109	0	1	0	0	0	0	0	0	0	4008	957	33	4		4	CST4	20	23667851	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	5371928	23667851	39357669	119	106623											
BPIL1	80341	broad.mit.edu	37	chr20	31604685	31604685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcttcggtgcctggaaGgggtcccaggagatgcccac	14	11	1	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31604685	T	T	31604685	1	4	109	0	1	0	0	0	0	0	0	0	1500	1015	35	2		2	BPIL1	20	31604685	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	7936834	31604685	31420835	120	106624											
PHACTR3	116154	broad.mit.edu	37	chr20	58381221	58381221	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaaagacaggagatcCggcagcagatcgagatgaag	14	6	0	7			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58381221	A	A	58381221	2	1	109	1	0	0	0	0	0	0	0	1	11906	643	23	1		1	PHACTR3	20	58381221	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	26776536	58381221	4644299	121	106625											
TRPM2	7226	broad.mit.edu	37	chr21	45838466	45838466	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctccggtgggcctgggggCgggaagcctctgggggacct	21	11	1	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45838466	T	T	45838466	1	4	109	0	1	0	0	0	0	0	0	0	16711	783	27	4		4	TRPM2	21	45838466	Intron	SNP	C	TCGA-44-2661-01A-01D-1105-08		45838466	2291429	122	106626											
BCR	613	broad.mit.edu	37	chr22	23653923	23653923	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctacatcgtgcgccagtgCgtggaggagatcgagcgccg	15	13	0	1	rs144561126	byFrequency	TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23653923	T	T	23653923	2	4	109	1	0	0	0	0	0	0	0	1	1393	776	27	4		4	BCR	22	23653923	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08		23653923	27650643	123	106627											
APOL5	80831	broad.mit.edu	37	chr22	36122633	36122633	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcatgctctcagcaactgGgacagggttgggggcagcag	15	10	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36122633	C	C	36122633	3	2	109	1	0	0	0	0	1	0	0	0	811	1232	43	4	528	4	APOL5	22	36122633	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	12468710	36122633	15181933	124	106628											
FBLN1	2192	broad.mit.edu	37	chr22	45944598	45944599	+	Frame_Shift_Ins	INS	-	G	G													ccctcgtctggctacaggctINSggcccccaatggccgcaact							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45944599	G	G	45944598	7	5	109	1	0	1	1	0	0	0	0	0	5755	1580	55	0	1597	0	FBLN1	22	45944598	Frame_Shift_Ins	INS	-	TCGA-44-2661-01A-01D-1105-08	9821965	45944598	5359968	125	106629											
ARSD	414	broad.mit.edu	37	chrX	2825346	2825346	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccatcctcgtggcatgaaCagaacgggaaatgtccgcag	11	13	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2825346	T	T	2825346	3	4	109	1	0	0	0	0	1	0	0	0	993	478	17	4	37	4	ARSD	23	2825346	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08		2825346	152445214	126	106630											
FAM48B1	100130302	broad.mit.edu	37	chrX	24382709	24382709	+	Missense_Mutation	SNP	T	C	C													ctccactggcctaaaggccaTcaatgtggagggcccagtcc							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24382709	C	C	24382709	3	2	109	1	0	0	0	0	1	0	0	0	5624	1435	50	5	1834	5	FAM48B1	23	24382709	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	21557363	24382709	130887851	127	106631	462	2									
FAM48B1	100130302	broad.mit.edu	37	chrX	24382713	24382713	+	Silent	SNP	T	C	C													actggcctaaaggccatcaaTgtggagggcccagtccaggg							TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24382713	C	C	24382713	2	2	109	1	0	0	0	0	0	0	0	1	5624	1461	51	5		5	FAM48B1	23	24382713	Silent	SNP	T	TCGA-44-2661-01A-01D-1105-08	4	24382713	130887847	128	106632	462	2									
FAM48B1	100130302	broad.mit.edu	37	chrX	24382817	24382817	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggaatcagtggcagtgAccttcagtcctcaggaggtc	13	10	3	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24382817	G	G	24382817	3	3	109	1	0	0	0	0	1	0	0	0	5624	275	10	5	1942	5	FAM48B1	23	24382817	Missense_Mutation	SNP	A	TCGA-44-2661-01A-01D-1105-08	104	24382817	130887743	129	106633											
KDM6A	7403	broad.mit.edu	37	chrX	44938572	44938572	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatatgcacagtaccaggcCtcctcattccaggaatcatt	6	12	2	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44938572	T	T	44938572	2	4	109	1	0	0	0	0	0	0	0	1	8207	668	24	4		4	KDM6A	23	44938572	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	20555755	44938572	110331988	130	106634											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	109	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-44-2661-01A-01D-1105-08	8714275	53652847	101617713	131	106635											
CXCR3	2833	broad.mit.edu	37	chrX	70836739	70836739	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtggcgttgaggcgctcgtCgtggtgggccgacaggaaga	20	8	0	2			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70836739	T	T	70836739	3	4	109	1	0	0	0	0	1	0	0	0	4125	884	31	4	527	4	CXCR3	23	70836739	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	17183892	70836739	84433821	132	106636											
ATP7A	538	broad.mit.edu	37	chrX	77284825	77284825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcacagttctgtgtattGcatgtccctgttcactggga	9	10	3	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77284825	T	T	77284825	3	4	109	1	0	0	0	0	1	0	0	0	1194	1319	46	3	3049	3	ATP7A	23	77284825	Missense_Mutation	SNP	G	TCGA-44-2661-01A-01D-1105-08	6448086	77284825	77985735	133	106637											
COL4A5	1287	broad.mit.edu	37	chrX	107814596	107814596	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcttgatggtatagttatTctttgtttcttgttcctcca	6	7	3	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107814596	C	C	107814596	1	2	109	0	1	0	0	0	0	0	0	0	3726	1798	62	5		5	COL4A5	23	107814596	Intron	SNP	T	TCGA-44-2661-01A-01D-1105-08	30529771	107814596	47455964	134	106638											
ENOX2	10495	broad.mit.edu	37	chrX	129771261	129771261	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgttctttgttagggTcatcttctctgtggactttg	11	8	4	0			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129771261	C	C	129771261	3	2	109	1	0	0	0	0	1	0	0	0	5169	1667	58	5	512	5	ENOX2	23	129771261	Missense_Mutation	SNP	T	TCGA-44-2661-01A-01D-1105-08	21956665	129771261	25499299	135	106639											
MAGEA11	4110	broad.mit.edu	37	chrX	148797858	148797858	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttattgctccgcaagtatCgagtcaaggggctgatcaca	10	9	2	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148797858	A	A	148797858	2	1	109	1	0	0	0	0	0	0	0	1	9253	876	31	3		3	MAGEA11	23	148797858	Silent	SNP	C	TCGA-44-2661-01A-01D-1105-08	19026597	148797858	6472702	136	106640											
CD99L2	83692	broad.mit.edu	37	chrX	149937661	149937661	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaagcccgtgctgggaacaGaactgggtttccctttgtat	12	10	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149937661	T	T	149937661	1	4	109	0	1	0	0	0	0	0	0	0	3081	957	33	3		3	CD99L2	23	149937661	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	1139803	149937661	5332899	137	106641											
PDZD4	57595	broad.mit.edu	37	chrX	153068845	153068845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagagggttgtagaccCgcttgccatcggcggagcgc	16	10	0	3			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153068845	A	A	153068845	3	1	109	1	0	0	0	0	1	0	0	0	11797	652	23	1	40	1	PDZD4	23	153068845	Missense_Mutation	SNP	C	TCGA-44-2661-01A-01D-1105-08	3131184	153068845	2201715	138	106642											
HCFC1	3054	broad.mit.edu	37	chrX	153225648	153225648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggtgagaaggggcgggaGgctatgggaggaggggagtc	24	3	0	1			TCGA-44-2661-01A-01D-1105-08	TCGA-44-2661-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153225648	T	T	153225648	1	4	109	0	1	0	0	0	0	0	0	0	7057	1015	35	2		2	HCFC1	23	153225648	Intron	SNP	G	TCGA-44-2661-01A-01D-1105-08	156803	153225648	2044912	139	106643											
CPSF3L	54973	broad.mit.edu	37	chr1	1250237	1250237	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccacggtctcgtggactttCttcaggaagtctcgctcccg	10	14	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1250237	G	G	1250237	3	3	110	1	0	0	0	0	1	0	0	0	3859	912	32	4	1177	4	CPSF3L	1	1250237	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08		1250237	248000384	1	106644											
KIAA1751	85452	broad.mit.edu	37	chr1	1920442	1920442	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggcaagagtttaaaaaaaAaaaaaagcagatcaaacatt	6	4	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1920442	T	T	1920442	1	4	110	0	1	0	0	0	0	0	0	0	8326	29	1	5		5	KIAA1751	1	1920442	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	670205	1920442	247330179	2	106645											
RPL22	6146	broad.mit.edu	37	chr1	6253091	6253091	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagcttttccgttcactttGatcctttcttgcaaaaactg	5	12	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6253091	C	C	6253091	3	2	110	1	0	0	0	0	1	0	0	0	13679	1280	45	4	253	4	RPL22	1	6253091	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	4332649	6253091	242997530	3	106646											
PEX14	5195	broad.mit.edu	37	chr1	10555367	10555367	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaagtgaaaatgtgctgcctCgagagccgctggtaagtacc	13	9	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10555367	G	G	10555367	3	3	110	1	0	0	0	0	1	0	0	0	11837	876	31	4	79	4	PEX14	1	10555367	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	4302276	10555367	238695254	4	106647											
NPPA	4878	broad.mit.edu	37	chr1	11907671	11907671	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgtacatgggattagctCtggtctgacctaggagctgg	13	8	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11907671	G	G	11907671	3	3	110	1	0	0	0	0	1	0	0	0	10686	913	32	4	396	4	NPPA	1	11907671	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1352304	11907671	237342950	5	106648											
PRAMEF11	440560	broad.mit.edu	37	chr1	12887798	12887798	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcttgttgtccctctctctGagttttcttcaccctgtttt	6	12	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12887798	C	C	12887798	1	2	110	0	1	0	0	0	0	0	0	0	12528	1305	45	4		4	PRAMEF11	1	12887798	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	980127	12887798	236362823	6	106649											
PRAMEF20	645425	broad.mit.edu	37	chr1	13743178	13743178	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcatgaggagtgaggagGtccaaggagggcccacaggc	19	8	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13743178	A	A	13743178	1	1	110	0	1	0	0	0	0	0	0	0	12538	1276	44	4		4	PRAMEF20	1	13743178	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	855380	13743178	235507443	7	106650											
NBPF1	55672	broad.mit.edu	37	chr1	16921339	16921339	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctctgatctagtcaacAcaactgtcctgaatgtgaaa	8	10	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16921339	C	C	16921339	1	2	110	0	1	0	0	0	0	0	0	0	10286	174	6	5		5	NBPF1	1	16921339	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	3178161	16921339	232329282	8	106651											
PADI1	29943	broad.mit.edu	37	chr1	17555010	17555010	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttgcacgtggcagagccaGagaggaacccaagctgctct	13	12	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17555010	C	C	17555010	1	2	110	0	1	0	0	0	0	0	0	0	11471	957	33	4		4	PADI1	1	17555010	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	633671	17555010	231695611	9	106652											
C1orf213	148898	broad.mit.edu	37	chr1	23698080	23698080	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagaggccagaagagccGtttggccagggtctccaatt	14	9	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23698080	A	A	23698080	1	1	110	0	1	0	0	0	0	0	0	0	2052	1160	40	4		4	C1orf213	1	23698080	3'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	6143070	23698080	225552541	10	106653											
RPL11	6135	broad.mit.edu	37	chr1	24021184	24021184	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttaagaaaaaacaacttctCagatactggaaactttggtt	7	6	1	2	rs11556036		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24021184	T	T	24021184	3	4	110	1	0	0	0	0	1	0	0	0	13668	838	29	4	313	4	RPL11	1	24021184	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	323104	24021184	225229437	11	106654											
NUDC	10726	broad.mit.edu	37	chr1	27250703	27250703	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggcggctctgtctcttcaGaagaaaagctcacctggcct	11	12	4	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27250703	C	C	27250703	1	2	110	0	1	0	0	0	0	0	0	0	10816	957	33	4		4	NUDC	1	27250703	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3229519	27250703	221999918	12	106655											
DCDC2B	149069	broad.mit.edu	37	chr1	32678510	32678510	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcttttttctttttctttGagacagagtcttgctctgta	6	8	5	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32678510	C	C	32678510	1	2	110	0	1	0	0	0	0	0	0	0	4319	1305	45	4		4	DCDC2B	1	32678510	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	5427807	32678510	216572111	13	106656											
EIF2C1	26523	broad.mit.edu	37	chr1	36367458	36367458	+	Intron	DEL	C	-	-													ctattccgtaccaaccccagCttctccttagggttctctcc							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36367458	-	-	36367458	6	5	110	0	1	1	0	1	0	0	0	0	5045	812	28	0		0	EIF2C1	1	36367458	Intron	DEL	C	TCGA-44-2662-01A-01D-0969-08	3688948	36367458	212883163	14	106657											
MACF1	23499	broad.mit.edu	37	chr1	39751103	39751103	+	Intron	DEL	T	-	-													tccaacatctgtgtcacatgTttcctgcttctcaccctctg							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39751103	-	-	39751103	6	5	110	0	1	1	0	1	0	0	0	0	9232	1740	60	0		0	MACF1	1	39751103	Intron	DEL	T	TCGA-44-2662-01A-01D-0969-08	3383645	39751103	209499518	15	106658											
MACF1	23499	broad.mit.edu	37	chr1	39797800	39797800	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattctggagtccctctggtCattcatggggttgctgtggc	14	9	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39797800	T	T	39797800	3	4	110	1	0	0	0	0	1	0	0	0	9232	838	29	4	5631	4	MACF1	1	39797800	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	46697	39797800	209452821	16	106659											
KIAA0467	23334	broad.mit.edu	37	chr1	43893319	43893319	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccggacccggtgtcctgtCtacatctacagctgttcact	8	16	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43893319	T	T	43893319	2	4	110	1	0	0	0	0	0	0	0	1	8248	900	32	4		4	KIAA0467	1	43893319	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	4095519	43893319	205357302	17	106660											
HYI	81888	broad.mit.edu	37	chr1	43917151	43917151	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcagttgaaacagatagggGaaattcagctctccggggct	13	8	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43917151	A	A	43917151	2	1	110	1	0	0	0	0	0	0	0	1	7538	1165	41	4		4	HYI	1	43917151	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	23832	43917151	205333470	18	106661											
ERI3	79033	broad.mit.edu	37	chr1	44785335	44785335	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagctgtggatggactaCaggctggacatacatgtgaa	14	6	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44785335	T	T	44785335	3	4	110	1	0	0	0	0	1	0	0	0	5271	478	17	4	466	4	ERI3	1	44785335	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	868184	44785335	204465286	19	106662											
ZSWIM5	57643	broad.mit.edu	37	chr1	45504493	45504493	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccaggctggtcttgaactCttgaactcaagtaatccacc	8	13	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45504493	G	G	45504493	1	3	110	0	1	0	0	0	0	0	0	0	18373	928	32	4		4	ZSWIM5	1	45504493	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	719158	45504493	203746128	20	106663											
GPBP1L1	60313	broad.mit.edu	37	chr1	46120223	46120223	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attcatacttacaaagtcctCctcttcaaactgcaactttt	2	12	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46120223	T	T	46120223	3	4	110	1	0	0	0	0	1	0	0	0	6661	864	30	4	987	4	GPBP1L1	1	46120223	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	615730	46120223	203130398	21	106664											
C1orf123	54987	broad.mit.edu	37	chr1	53686334	53686334	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtgccgtctgcgcaccctCagtagggcggggccggggcc	19	14	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53686334	T	T	53686334	1	4	110	0	1	0	0	0	0	0	0	0	2011	841	29	4		4	C1orf123	1	53686334	5'Flank	SNP	C	TCGA-44-2662-01A-01D-0969-08	7566111	53686334	195564287	22	106665											
C1orf87	127795	broad.mit.edu	37	chr1	60499418	60499418	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctacacactatggaaccaGagagcccatctacgtaggcc	9	13	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60499418	A	A	60499418	1	1	110	0	1	0	0	0	0	0	0	0	2086	957	33	4		4	C1orf87	1	60499418	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	6813084	60499418	188751203	23	106666											
C1orf87	127795	broad.mit.edu	37	chr1	60505791	60505791	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacgtgacttgagttctcttCtgaccagggcaagaagaaaa	11	8	2	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60505791	G	G	60505791	3	3	110	1	0	0	0	0	1	0	0	0	2086	913	32	4	1127	4	C1orf87	1	60505791	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	6373	60505791	188744830	24	106667											
SLC35D1	23169	broad.mit.edu	37	chr1	67486180	67486180	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttctcactttatactaatCtctagccaagataaacaatc	3	10	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67486180	T	T	67486180	1	4	110	0	1	0	0	0	0	0	0	0	14695	928	32	4		4	SLC35D1	1	67486180	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	6980389	67486180	181764441	25	106668											
SLC35D1	23169	broad.mit.edu	37	chr1	67486258	67486258	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctatgaattttccccacctCactgcttcttatactgcagc	5	14	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67486258	T	T	67486258	1	4	110	0	1	0	0	0	0	0	0	0	14695	841	29	4		4	SLC35D1	1	67486258	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	78	67486258	181764363	26	106669											
RPE65	6121	broad.mit.edu	37	chr1	68897294	68897294	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagaagataacagaaacctCagtgagcaggaaagaattca	10	6	2	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68897294	T	T	68897294	1	4	110	0	1	0	0	0	0	0	0	0	13656	841	29	4		4	RPE65	1	68897294	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1411036	68897294	180353327	27	106670											
LHX8	431707	broad.mit.edu	37	chr1	75602968	75602968	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taggatagggcctcgggtgcGaggcccaaggggagcgggct	20	9	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75602968	A	A	75602968	1	1	110	0	1	0	0	0	0	0	0	0	8848	1073	37	4		4	LHX8	1	75602968	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	6705674	75602968	173647653	28	106671											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77094490	77094490	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaaactggacattgtcttGataatggttttcctgatctt	7	8	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77094490	C	C	77094490	4	2	110	1	0	0	0	0	0	0	0	0	15343	1285	45	4	949	4	ST6GALNAC3	1	77094490	Nonstop_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	1491522	77094490	172156131	29	106672											
CCBL2	56267	broad.mit.edu	37	chr1	89435211	89435211	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattttaaaagccagtaaatCatgggtcactcttcttcctt	5	9	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89435211	T	T	89435211	1	4	110	0	1	0	0	0	0	0	0	0	2759	841	29	4		4	CCBL2	1	89435211	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	12340721	89435211	159815410	30	106673											
EVI5	7813	broad.mit.edu	37	chr1	93131467	93131467	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaacaccaggcattcaacaGaagcttgcataagtagtcac	7	10	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93131467	A	A	93131467	1	1	110	0	1	0	0	0	0	0	0	0	5331	957	33	4		4	EVI5	1	93131467	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3696256	93131467	156119154	31	106674											
EVI5	7813	broad.mit.edu	37	chr1	93159385	93159385	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttttttgaattgtatttGacttggtaagctgcttggat	9	3	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93159385	A	A	93159385	2	1	110	1	0	0	0	0	0	0	0	1	5331	1277	45	4		4	EVI5	1	93159385	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	27918	93159385	156091236	32	106675											
STXBP3	6814	broad.mit.edu	37	chr1	109319079	109319080	+	Intron	DEL	AA	-	-													ggcaagtaatgactatgcatAaagtctgtcttatttcttta							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109319080	-	-	109319079	6	5	110	0	1	1	0	1	0	0	0	0	15472	377	13	0		0	STXBP3	1	109319079	Intron	DEL	AA	TCGA-44-2662-01A-01D-0969-08	16159694	109319079	139931542	33	106676											
AP4B1	10717	broad.mit.edu	37	chr1	114438396	114438396	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctgatgcggcaaaggatGaagttttaggaagctctggg	14	6	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114438396	T	T	114438396	4	4	110	1	0	0	0	0	0	1	0	0	753	1294	45	3	452	3	AP4B1	1	114438396	Nonsense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	5119317	114438396	134812225	34	106677											
GDAP2	54834	broad.mit.edu	37	chr1	118420645	118420645	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttaccctggcatcatattCaaggacaaaaggaggaaagt	9	8	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118420645	T	T	118420645	3	4	110	1	0	0	0	0	1	0	0	0	6372	835	29	4	114	4	GDAP2	1	118420645	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	3982249	118420645	130829976	35	106678											
NOTCH2	4853	broad.mit.edu	37	chr1	120467956	120467957	+	Frame_Shift_Ins	INS	-	A	A													ttgctgttcccctggcattcINSaaagttgtcaaacaggcact							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120467957	A	A	120467956	7	5	110	1	0	1	1	0	0	0	0	0	10643	835	29	0	2972	0	NOTCH2	1	120467956	Frame_Shift_Ins	INS	-	TCGA-44-2662-01A-01D-0969-08	2047311	120467956	128782665	36	106679											
NBPF9	400818	broad.mit.edu	37	chr1	144619308	144619308	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgactgtgcttgcagaatgtGaagtgggaagtatctgaacg	14	5	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144619308	A	A	144619308	1	1	110	0	1	0	0	0	0	0	0	0	10294	1305	45	4		4	NBPF9	1	144619308	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	24151352	144619308	104631313	37	106680											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	110	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-44-2662-01A-01D-0969-08	7123252	151742560	97508061	38	106681											
GATAD2B	57459	broad.mit.edu	37	chr1	153782584	153782584	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacaggcactgcatgcgacaGaagttgggggaatgaaagag	15	6	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153782584	A	A	153782584	1	1	110	0	1	0	0	0	0	0	0	0	6323	957	33	4		4	GATAD2B	1	153782584	3'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	2040024	153782584	95468037	39	106682											
CREB3L4	148327	broad.mit.edu	37	chr1	153945572	153945572	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtacgcctgggttatttCtggcttcttgtgggccatgt	13	9	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153945572	G	G	153945572	1	3	110	0	1	0	0	0	0	0	0	0	3891	928	32	4		4	CREB3L4	1	153945572	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	162988	153945572	95305049	40	106683											
ASH1L	55870	broad.mit.edu	37	chr1	155452250	155452250	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgaagggtcctaaaatttGaacaagaaaaaagttaaaga	8	3	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155452250	A	A	155452250	1	1	110	0	1	0	0	0	0	0	0	0	1045	1305	45	4		4	ASH1L	1	155452250	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1506678	155452250	93798371	41	106684											
SMG5	23381	broad.mit.edu	37	chr1	156244470	156244470	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgaggcagacactggcttCttgcatcctatgagacaaag	10	11	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156244470	G	G	156244470	3	3	110	1	0	0	0	0	1	0	0	0	14910	912	32	4	2660	4	SMG5	1	156244470	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	792220	156244470	93006151	42	106685											
ARHGEF11	9826	broad.mit.edu	37	chr1	156928750	156928750	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaaacacatataacaagaGatatgtgcacgtcccagagg	9	9	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156928750	C	C	156928750	1	2	110	0	1	0	0	0	0	0	0	0	898	957	33	4		4	ARHGEF11	1	156928750	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	684280	156928750	92321871	43	106686											
OR10X1	128367	broad.mit.edu	37	chr1	158549566	158549566	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagaccacaaaaagaaAtgtctgtacatgtgggtaca	9	6	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158549566	T	T	158549566	3	4	110	1	0	0	0	0	1	0	0	0	11016	101	4	5	851	5	OR10X1	1	158549566	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	1620816	158549566	90701055	44	106687											
ITLN2	142683	broad.mit.edu	37	chr1	160922535	160922535	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggctgctgctagaaaatgtGagaatgagtctcattagaag	12	5	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160922535	A	A	160922535	1	1	110	0	1	0	0	0	0	0	0	0	7981	1305	45	4		4	ITLN2	1	160922535	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2372969	160922535	88328086	45	106688											
FCGR3B	2215	broad.mit.edu	37	chr1	161595804	161595804	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggggacctcctggtgatCaccaggagggaaccacatat	12	10	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161595804	T	T	161595804	1	4	110	0	1	0	0	0	0	0	0	0	5842	841	29	4		4	FCGR3B	1	161595804	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	673269	161595804	87654817	46	106689											
SELP	6403	broad.mit.edu	37	chr1	169562793	169562793	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaattacataaatcaatttCttttgatttatgtaaccaag	3	5	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169562793	G	G	169562793	1	3	110	0	1	0	0	0	0	0	0	0	14132	928	32	4		4	SELP	1	169562793	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	7966989	169562793	79687828	47	106690											
CACNA1E	777	broad.mit.edu	37	chr1	181480642	181480642	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacttcatcgtggtcctcAgtgggtaagtccattttctc	10	10	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181480642	G	G	181480642	3	3	110	1	0	0	0	0	1	0	0	0	2568	188	7	5	518	5	CACNA1E	1	181480642	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	11917849	181480642	67769979	48	106691											
LAMC2	3918	broad.mit.edu	37	chr1	183192588	183192588	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaccttttacgtaccatgaAggttgctatgtgctgagaaa	10	8	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183192588	C	C	183192588	1	2	110	0	1	0	0	0	0	0	0	0	8687	87	3	5		5	LAMC2	1	183192588	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	1711946	183192588	66058033	49	106692											
DENND1B	163486	broad.mit.edu	37	chr1	197576259	197576259	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgattctaatgtgtttgtatCaacatttaacataacaacat	4	6	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197576259	G	G	197576259	3	3	110	1	0	0	0	0	1	0	0	0	4467	826	29	4	1547	4	DENND1B	1	197576259	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	14383671	197576259	51674362	50	106693											
NEK7	140609	broad.mit.edu	37	chr1	198248314	198248314	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tattttaaaaatcaccaggtCctgaacagatgcctgcaact	6	10	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198248314	A	A	198248314	1	1	110	0	1	0	0	0	0	0	0	0	10424	870	30	3		3	NEK7	1	198248314	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	672055	198248314	51002307	51	106694											
PTPRC	5788	broad.mit.edu	37	chr1	198721687	198721687	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagaaaataagctgaacttCactccagttaatgctctctt	5	9	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198721687	T	T	198721687	1	4	110	0	1	0	0	0	0	0	0	0	12905	841	29	4		4	PTPRC	1	198721687	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	473373	198721687	50528934	52	106695											
PIK3C2B	5287	broad.mit.edu	37	chr1	204435749	204435749	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacccacaagagaaaggagAgagagaggaagaaaaagaga	13	4	0	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204435749	T	T	204435749	1	4	110	0	1	0	0	0	0	0	0	0	12005	319	11	5		5	PIK3C2B	1	204435749	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	5714062	204435749	44814872	53	106696											
MIA3	375056	broad.mit.edu	37	chr1	222832865	222832865	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaaaaccaggtaataattCtagtgccctactatatagtg	6	7	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222832865	G	G	222832865	1	3	110	0	1	0	0	0	0	0	0	0	9658	928	32	4		4	MIA3	1	222832865	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	18397116	222832865	26417756	54	106697											
WDR26	80232	broad.mit.edu	37	chr1	224619513	224619513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatacagtgtaaaacagacCtgaccaattttagggtttta	8	6	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224619513	A	A	224619513	1	1	110	0	1	0	0	0	0	0	0	0	17410	696	24	2		2	WDR26	1	224619513	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1786648	224619513	24631108	55	106698											
LBR	3930	broad.mit.edu	37	chr1	225592095	225592095	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtcaaactagcactcttctGaaatgcttaccacatgggag	9	10	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225592095	A	A	225592095	1	1	110	0	1	0	0	0	0	0	0	0	8724	1305	45	4		4	LBR	1	225592095	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	972582	225592095	23658526	56	106699											
KIAA1804	84451	broad.mit.edu	37	chr1	233489706	233489707	+	Intron	DEL	TG	-	-													gccaagctcatgaaaggtatTgtgtgtgtgtgtgtgtgtct					rs7551511	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	233489707	-	-	233489706	6	5	110	0	1	1	0	1	0	0	0	0	8329	1827	63	0		0	KIAA1804	1	233489706	Intron	DEL	TG	TCGA-44-2662-01A-01D-0969-08	7897611	233489706	15760915	57	106700											
ACTN2	88	broad.mit.edu	37	chr1	236908017	236908017	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcacgaggcgttcgagagCgacctggcagcgcaccagga	15	12	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236908017	G	G	236908017	3	3	110	1	0	0	0	0	1	0	0	0	205	767	27	4	1393	4	ACTN2	1	236908017	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	3418311	236908017	12342604	58	106701											
RYR2	6262	broad.mit.edu	37	chr1	237550554	237550554	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcttaccagagcctgaagtGatgcctccttttgcctcttg	9	12	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237550554	C	C	237550554	1	2	110	0	1	0	0	0	0	0	0	0	13880	1305	45	4		4	RYR2	1	237550554	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	642537	237550554	11700067	59	106702											
RYR2	6262	broad.mit.edu	37	chr1	237806522	237806522	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactttatgtatacactgatCagaaaattattttggacttg	6	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237806522	G	G	237806522	1	3	110	0	1	0	0	0	0	0	0	0	13880	841	29	4		4	RYR2	1	237806522	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	255968	237806522	11444099	60	106703											
FMN2	56776	broad.mit.edu	37	chr1	240497523	240497523	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagaaaactgaagaaagacTtgaaaggtaacttaaaatcc	7	6	1	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240497523	G	G	240497523	3	3	110	1	0	0	0	0	1	0	0	0	6008	1606	56	5	4809	5	FMN2	1	240497523	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	2691001	240497523	8753098	61	106704											
PLD5	200150	broad.mit.edu	37	chr1	242271010	242271010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctatttcagtgcaaatcGctttaagagatgaaataaag	9	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242271010	T	T	242271010	3	4	110	1	0	0	0	0	1	0	0	0	12144	1087	38	3	420	3	PLD5	1	242271010	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	1773487	242271010	6979611	62	106705											
KIF26B	55083	broad.mit.edu	37	chr1	245530604	245530604	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcggtggccatccaggctCaccagtacctggatggcacc	11	14	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245530604	T	T	245530604	3	4	110	1	0	0	0	0	1	0	0	0	8365	826	29	4	944	4	KIF26B	1	245530604	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	3259594	245530604	3720017	63	106706											
OR2W5	441932	broad.mit.edu	37	chr1	247655162	247655162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacacctgctcttctcaCctcacagtggtctctctctt	4	17	5	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247655162	A	A	247655162	3	1	110	1	0	0	0	0	1	0	0	0	11128	507	18	3	735	3	OR2W5	1	247655162	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	2124558	247655162	1595459	64	106707											
OR1C1	26188	broad.mit.edu	37	chr1	247920842	247920842	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccctgttccttagggtataGatgaaaggattcagcatcgg	11	8	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247920842	T	T	247920842	2	4	110	1	0	0	0	0	0	0	0	1	11046	932	33	3		3	OR1C1	1	247920842	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	265680	247920842	1329779	65	106708											
OR2L8	391190	broad.mit.edu	37	chr1	248112672	248112672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccttattgccgatccagGgccatcaatcatttcttctg	6	12	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112672	T	T	248112672	3	4	110	1	0	0	0	0	1	0	0	0	11103	1223	43	2	515	2	OR2L8	1	248112672	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	191830	248112672	1137949	66	106709											
OR2L13	284521	broad.mit.edu	37	chr1	248167015	248167015	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatggacacctgggtctatGagggcacagtgcttttgagt	14	8	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248167015	T	T	248167015	1	4	110	0	1	0	0	0	0	0	0	0	11100	1305	45	3		3	OR2L13	1	248167015	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	54343	248167015	1083606	67	106710											
OR2M4	26245	broad.mit.edu	37	chr1	248403046	248403046	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catacgccagaccaggacaaGatggtgtcggccttctacac	10	13	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248403046	C	C	248403046	3	2	110	1	0	0	0	0	1	0	0	0	11106	933	33	4	818	4	OR2M4	1	248403046	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	236031	248403046	847575	68	106711											
SLC30A6	55676	broad.mit.edu	37	chr2	32428079	32428079	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agacccagaggagtgtaactGaaatagccatgaatccacac	9	10	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32428079	C	C	32428079	1	2	110	0	1	0	0	0	0	0	0	0	14673	1305	45	4		4	SLC30A6	2	32428079	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08		32428079	210771294	69	106712											
ABCG8	64241	broad.mit.edu	37	chr2	44078697	44078697	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccacagaagctccgctctCagggatatccctggtggctt	10	15	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44078697	T	T	44078697	1	4	110	0	1	0	0	0	0	0	0	0	72	841	29	4		4	ABCG8	2	44078697	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	11650618	44078697	199120676	70	106713											
PREPL	9581	broad.mit.edu	37	chr2	44569580	44569580	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctttttctgtgtaaaagCgttcattacgtttgttatca	8	6	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44569580	T	T	44569580	3	4	110	1	0	0	0	0	1	0	0	0	12581	768	27	4	1495	4	PREPL	2	44569580	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	490883	44569580	198629793	71	106714											
EPAS1	2034	broad.mit.edu	37	chr2	46587748	46587748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatataaaactgacttcaGctggttcttcccatccttcc	4	14	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46587748	T	T	46587748	1	4	110	0	1	0	0	0	0	0	0	0	5192	986	34	3		3	EPAS1	2	46587748	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2018168	46587748	196611625	72	106715											
EPAS1	2034	broad.mit.edu	37	chr2	46608818	46608818	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacaagctgaagctgaagcGacagctggagtatgaagagc	13	8	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46608818	A	A	46608818	3	1	110	1	0	0	0	0	1	0	0	0	5192	1058	37	4	2179	4	EPAS1	2	46608818	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	21070	46608818	196590555	73	106716											
MTIF2	4528	broad.mit.edu	37	chr2	55489449	55489449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgtaaaaatatctgactCacctgtgtttttttccattg	5	8	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55489449	T	T	55489449	1	4	110	0	1	0	0	0	0	0	0	0	10028	841	29	4		4	MTIF2	2	55489449	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	8880631	55489449	187709924	74	106717											
CCDC88A	55704	broad.mit.edu	37	chr2	55546020	55546020	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaagagtggtattctgttCttgtaatgacactgtctgcc	10	7	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55546020	T	T	55546020	3	4	110	1	0	0	0	0	1	0	0	0	2891	922	32	4	2388	4	CCDC88A	2	55546020	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	56571	55546020	187653353	75	106718											
USP34	9736	broad.mit.edu	37	chr2	61538783	61538783	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgagttacttcagccctaaGatctgctacctggtcactag	8	11	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61538783	C	C	61538783	3	2	110	1	0	0	0	0	1	0	0	0	17192	942	33	4	7147	4	USP34	2	61538783	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	5992763	61538783	181660590	76	106719											
MXD1	4084	broad.mit.edu	37	chr2	70165187	70165187	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacgcctgagctttctgcaGagcgctttcatcaatgtcct	8	14	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70165187	C	C	70165187	1	2	110	0	1	0	0	0	0	0	0	0	10093	957	33	4		4	MXD1	2	70165187	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	8626404	70165187	173034186	77	106720											
TIA1	7072	broad.mit.edu	37	chr2	70443902	70443902	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatttttgaatagtagtcTtgatttgcttctcatctatt	5	6	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70443902	G	G	70443902	1	3	110	0	1	0	0	0	0	0	0	0	16010	1624	56	5		5	TIA1	2	70443902	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	278715	70443902	172755471	78	106721											
DYSF	8291	broad.mit.edu	37	chr2	71762136	71762136	+	Intron	DEL	C	-	-													gcttgatcaacttgtcccctCcctgtgtcttctagctgtgc							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71762136	-	-	71762136	6	5	110	0	1	1	0	1	0	0	0	0	4899	870	30	0		0	DYSF	2	71762136	Intron	DEL	C	TCGA-44-2662-01A-01D-0969-08	1318234	71762136	171437237	79	106722											
DYSF	8291	broad.mit.edu	37	chr2	71838546	71838546	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttcctggccccagcctttCctggggcccggggccttctg	12	18	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71838546	G	G	71838546	1	3	110	0	1	0	0	0	0	0	0	0	4899	870	30	4		4	DYSF	2	71838546	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	76410	71838546	171360827	80	106723											
FBXO41	150726	broad.mit.edu	37	chr2	73486384	73486384	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctttgaaataatccgcaatCccaatctggaccacaatgga	6	11	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73486384	T	T	73486384	2	4	110	1	0	0	0	0	0	0	0	1	5807	842	30	4		4	FBXO41	2	73486384	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	1647838	73486384	169712989	81	106724											
C2orf78	388960	broad.mit.edu	37	chr2	74042320	74042320	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagaaatacccagacacttGagagtaacccatcacctgag	8	12	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74042320	C	C	74042320	3	2	110	1	0	0	0	0	1	0	0	0	2217	1291	45	4	980	4	C2orf78	2	74042320	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	555936	74042320	169157053	82	106725											
STARD7	56910	broad.mit.edu	37	chr2	96858055	96858055	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttcaggtaagacatcccttGagaaaattccacagccatga	8	10	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96858055	C	C	96858055	1	2	110	0	1	0	0	0	0	0	0	0	15380	1305	45	4		4	STARD7	2	96858055	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	22815735	96858055	146341318	83	106726											
KIAA1310	55683	broad.mit.edu	37	chr2	97279371	97279371	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggatctacaaagaagaaaGagcaaagatgactccagtgt	11	6	1	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97279371	C	C	97279371	1	2	110	0	1	0	0	0	0	0	0	0	8292	957	33	4		4	KIAA1310	2	97279371	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	421316	97279371	145920002	84	106727											
ANAPC1	64682	broad.mit.edu	37	chr2	112604723	112604723	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcaatcgtacctaactcaGaggtggcaatttcaggaata	8	9	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112604723	C	C	112604723	3	2	110	1	0	0	0	0	1	0	0	0	598	942	33	4	4122	4	ANAPC1	2	112604723	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	15325352	112604723	130594650	85	106728											
SCTR	6344	broad.mit.edu	37	chr2	120221964	120221964	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccgggtaacacattctgtGagcataacctgaatgaggaa	10	8	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120221964	C	C	120221964	1	2	110	0	1	0	0	0	0	0	0	0	14056	1305	45	4		4	SCTR	2	120221964	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	7617241	120221964	122977409	86	106729											
IWS1	55677	broad.mit.edu	37	chr2	128263325	128263325	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttctcgatcactagtttCattctgaaaaataaagtgag	6	7	5	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128263325	A	A	128263325	4	1	110	1	0	0	0	0	0	1	0	0	8001	835	29	3	2353	3	IWS1	2	128263325	Nonsense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	8041361	128263325	114936048	87	106730											
RIF1	55183	broad.mit.edu	37	chr2	152273026	152273026	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttttatatttgagacttTaaagagtatcacctattcta	5	5	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152273026	G	G	152273026	1	3	110	0	1	0	0	0	0	0	0	0	13468	1769	61	5		5	RIF1	2	152273026	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	24009701	152273026	90926347	88	106731											
RIF1	55183	broad.mit.edu	37	chr2	152295239	152295239	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggagctaattagcttgGtgaagtcagttactgaatca	12	5	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152295239	A	A	152295239	3	1	110	1	0	0	0	0	1	0	0	0	13468	1261	44	4	1575	4	RIF1	2	152295239	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	22213	152295239	90904134	89	106732											
UPP2	151531	broad.mit.edu	37	chr2	158991236	158991236	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgaacccattcattccatCagttgtgctaattgctcttc	6	11	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158991236	T	T	158991236	1	4	110	0	1	0	0	0	0	0	0	0	17139	841	29	4		4	UPP2	2	158991236	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	6695997	158991236	84208137	90	106733											
SLC38A11	151258	broad.mit.edu	37	chr2	165755217	165755217	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgatggaatgataaaaatGaggggagttgcacagagcac	14	5	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165755217	T	T	165755217	2	4	110	1	0	0	0	0	0	0	0	1	14717	1277	45	3		3	SLC38A11	2	165755217	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	6763981	165755217	77444156	91	106734											
DHRS9	10170	broad.mit.edu	37	chr2	169938312	169938312	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctttaaaggcagaaacctCagagagacttcgtactgtgc	10	9	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169938312	T	T	169938312	3	4	110	1	0	0	0	0	1	0	0	0	4538	838	29	4	223	4	DHRS9	2	169938312	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	4183095	169938312	73261061	92	106735											
TTN	7273	broad.mit.edu	37	chr2	179605502	179605502	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgggactgtacaatcTgcagctgtaggttgggagat	13	6	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179605502	A	A	179605502	3	1	110	1	0	0	0	0	1	0	0	0	16861	1580	55	5	92331	5	TTN	2	179605502	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	9667190	179605502	63593871	93	106736											
SSFA2	6744	broad.mit.edu	37	chr2	182760647	182760647	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttggaggagagtttaActgtgattagaagcttattg	12	2	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182760647	G	G	182760647	1	3	110	0	1	0	0	0	0	0	0	0	15301	58	2	5		5	SSFA2	2	182760647	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	3155145	182760647	60438726	94	106737											
DNAJC10	54431	broad.mit.edu	37	chr2	183593847	183593847	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttacaaggtgccatctcacTagtcttctgtaataataaac	5	9	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183593847	C	C	183593847	1	2	110	0	1	0	0	0	0	0	0	0	4669	1537	53	5		5	DNAJC10	2	183593847	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	833200	183593847	59605526	95	106738											
PMS1	5378	broad.mit.edu	37	chr2	190738169	190738169	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcaatttttgtttttaatgGacatgttctggaatatgaac	8	4	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190738169	C	C	190738169	1	2	110	0	1	0	0	0	0	0	0	0	12237	1189	41	4		4	PMS1	2	190738169	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	7144322	190738169	52461204	96	106739											
PLCL1	5334	broad.mit.edu	37	chr2	198949863	198949863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaatgatcattgtgaaagGaaagaagttgccttctgatc	10	5	2	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198949863	T	T	198949863	3	4	110	1	0	0	0	0	1	0	0	0	12134	1174	41	3	1628	3	PLCL1	2	198949863	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	8211694	198949863	44249510	97	106740											
C2orf47	79568	broad.mit.edu	37	chr2	200824033	200824033	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctgtcacagtgtaaatttGatctgttggaagaacttgtg	11	5	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200824033	C	C	200824033	3	2	110	1	0	0	0	0	1	0	0	0	2191	1290	45	4	499	4	C2orf47	2	200824033	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	1874170	200824033	42375340	98	106741											
MAP2	4133	broad.mit.edu	37	chr2	210569127	210569127	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttatcttccttttactttAtagtttggtttattttgtgc	5	5	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210569127	G	G	210569127	1	3	110	0	1	0	0	0	0	0	0	0	9327	464	16	5		5	MAP2	2	210569127	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	9745094	210569127	32630246	99	106742											
CPS1	1373	broad.mit.edu	37	chr2	211542708	211542708	+	Nonstop_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgctggaaaagcagcatAgagatgcagacaccccagcc	11	12	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211542708	G	G	211542708	4	3	110	1	0	0	0	0	0	0	0	0	3855	433	15	5	4674	5	CPS1	2	211542708	Nonstop_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	973581	211542708	31656665	100	106743											
ABCA12	26154	broad.mit.edu	37	chr2	215919366	215919366	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgctgtccttatccaggtTggatgactttctcagaatct	8	10	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215919366	A	A	215919366	3	1	110	1	0	0	0	0	1	0	0	0	30	1812	63	5	7678	5	ABCA12	2	215919366	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	4376658	215919366	27280007	101	106744											
OBSL1	23363	broad.mit.edu	37	chr2	220432056	220432056	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatgtccgctgactgtgcaGatgcggaagcggtagtcacc	13	12	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220432056	C	C	220432056	3	2	110	1	0	0	0	0	1	0	0	0	10908	932	33	4	4138	4	OBSL1	2	220432056	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	4512690	220432056	22767317	102	106745											
COL4A3	1285	broad.mit.edu	37	chr2	228109739	228109739	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgggaaaaatccgtagctaGaaaatttaaaagtaagctca	8	5	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228109739	C	C	228109739	1	2	110	0	1	0	0	0	0	0	0	0	3723	957	33	4		4	COL4A3	2	228109739	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	7677683	228109739	15089634	103	106746											
SP140	11262	broad.mit.edu	37	chr2	231109628	231109628	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcaaggagaagctcacttGagtgctgaacaccaggattc	11	9	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231109628	C	C	231109628	1	2	110	0	1	0	0	0	0	0	0	0	15076	1305	45	4		4	SP140	2	231109628	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2999889	231109628	12089745	104	106747											
SP140	11262	broad.mit.edu	37	chr2	231109762	231109762	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggctggtggaggagatgctGaagatgcacccagcctacta	14	9	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231109762	A	A	231109762	3	1	110	1	0	0	0	0	1	0	0	0	15076	1291	45	4	770	4	SP140	2	231109762	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	134	231109762	12089611	105	106748											
AGAP1	116987	broad.mit.edu	37	chr2	236716111	236716111	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaagtctctcacttgacatCaattagcagagttcctgtgt	8	9	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236716111	T	T	236716111	1	4	110	0	1	0	0	0	0	0	0	0	366	841	29	4		4	AGAP1	2	236716111	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	5606349	236716111	6483262	106	106749											
HRH1	3269	broad.mit.edu	37	chr3	11302247	11302247	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtccaacaaggaaatagagGacgaaggcctgtgtgttgcc	13	8	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11302247	A	A	11302247	1	1	110	0	1	0	0	0	0	0	0	0	7422	1189	41	4		4	HRH1	3	11302247	3'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08		11302247	186720183	107	106750											
RARB	5915	broad.mit.edu	37	chr3	25542961	25542961	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacatgaaaatggggattGatatggagattttgagatga	13	1	0	6			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25542961	C	C	25542961	1	2	110	0	1	0	0	0	0	0	0	0	13161	1305	45	4		4	RARB	3	25542961	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	14240714	25542961	172479469	108	106751											
MLH1	4292	broad.mit.edu	37	chr3	37059088	37059088	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacacccattcctgtacctCaggtaatgtagcaccaaact	5	14	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37059088	T	T	37059088	2	4	110	1	0	0	0	0	0	0	0	1	9710	813	29	4		4	MLH1	3	37059088	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	11516127	37059088	160963342	109	106752											
GOLGA4	2803	broad.mit.edu	37	chr3	37396654	37396655	+	Nonsense_Mutation	DNP	GG	TT	TT													gatcagactcagaaaattttGgaaagagaagatgctcggct							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	37396655	TT	TT	37396654	4	4	110	1	0	0	0	0	0	1	0	0	6619	1339	47	2	6795	2	GOLGA4	3	37396654	Nonsense_Mutation	DNP	GG	TCGA-44-2662-01A-01D-0969-08	337566	37396654	160625776	110	106753											
EXOG	9941	broad.mit.edu	37	chr3	38548401	38548401	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaagatgtttgggtggtatCtgggcctttgaccttacctc	12	8	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38548401	T	T	38548401	3	4	110	1	0	0	0	0	1	0	0	0	5354	913	32	4	605	4	EXOG	3	38548401	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1151747	38548401	159474029	111	106754											
KIF15	56992	broad.mit.edu	37	chr3	44893620	44893620	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgacttcctgtgctcctgGaaggcaagaaataatgtgac	10	9	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44893620	T	T	44893620	1	4	110	0	1	0	0	0	0	0	0	0	8347	1189	41	3		3	KIF15	3	44893620	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	6345219	44893620	153128810	112	106755											
KIF15	56992	broad.mit.edu	37	chr3	44894219	44894219	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaagaaaagaaaagaagtGaatcttgaggattccggtca	10	4	2	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44894219	A	A	44894219	3	1	110	1	0	0	0	0	1	0	0	0	8347	1291	45	4	4297	4	KIF15	3	44894219	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	599	44894219	153128211	113	106756											
COL7A1	1294	broad.mit.edu	37	chr3	48610496	48610496	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacccctgtggaccctgacgGagaacaagtcggatgtcagg	14	11	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48610496	A	A	48610496	1	1	110	0	1	0	0	0	0	0	0	0	3736	1189	41	4		4	COL7A1	3	48610496	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3716277	48610496	149411934	114	106757											
MST1	4485	broad.mit.edu	37	chr3	49723444	49723444	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgagacctcgccccggccctCcggttccaggcttccagccc	10	21	0	1	rs4052585		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49723444	G	G	49723444	1	3	110	0	1	0	0	0	0	0	0	0	9984	870	30	4		4	MST1	3	49723444	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1112948	49723444	148298986	115	106758											
RAD54L2	23132	broad.mit.edu	37	chr3	51667888	51667888	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagtttgttccataaaActctctttttggacttggct	7	9	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51667888	T	T	51667888	1	4	110	0	1	0	0	0	0	0	0	0	13102	58	2	5		5	RAD54L2	3	51667888	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	1944444	51667888	146354542	116	106759											
TEX264	51368	broad.mit.edu	37	chr3	51718530	51718530	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctaccagaaatttggcttCaaggtgttctccttcccggc	8	13	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51718530	T	T	51718530	2	4	110	1	0	0	0	0	0	0	0	1	15905	825	29	4		4	TEX264	3	51718530	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	50642	51718530	146303900	117	106760											
GPR27	2850	broad.mit.edu	37	chr3	71804103	71804103	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctctgggggccctacgtCgtggccagctacctgcgggt	14	15	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71804103	T	T	71804103	2	4	110	1	0	0	0	0	0	0	0	1	6750	871	31	4		4	GPR27	3	71804103	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	20085573	71804103	126218327	118	106761											
ROBO1	6091	broad.mit.edu	37	chr3	78988150	78988150	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttatttttaaagcattggCttaaccattactatttaaac	4	7	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78988150	G	G	78988150	1	3	110	0	1	0	0	0	0	0	0	0	13624	812	28	4		4	ROBO1	3	78988150	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	7184047	78988150	119034280	119	106762											
ARL6	84100	broad.mit.edu	37	chr3	97516812	97516812	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgacttagattactttaGaaaatagattttgccctata	5	5	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97516812	A	A	97516812	1	1	110	0	1	0	0	0	0	0	0	0	945	957	33	4		4	ARL6	3	97516812	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	18528662	97516812	100505618	120	106763											
IMPG2	50939	broad.mit.edu	37	chr3	100949976	100949976	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctcggtaccaccagttctCacccacccggcacctgcaac	7	20	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100949976	T	T	100949976	3	4	110	1	0	0	0	0	1	0	0	0	7799	835	29	4	494	4	IMPG2	3	100949976	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	3433164	100949976	97072454	121	106764											
MORC1	27136	broad.mit.edu	37	chr3	108754118	108754118	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctccctcatccctcatttCttaacacaatgacttgcata	3	14	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108754118	T	T	108754118	1	4	110	0	1	0	0	0	0	0	0	0	9795	928	32	4		4	MORC1	3	108754118	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	7804142	108754118	89268312	122	106765											
SLC15A2	6565	broad.mit.edu	37	chr3	121634004	121634004	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtgtgtaccttcagctctGaatctgaacgtggagtgggg	14	7	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121634004	T	T	121634004	1	4	110	0	1	0	0	0	0	0	0	0	14512	1305	45	3		3	SLC15A2	3	121634004	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	12879886	121634004	76388426	123	106766											
KALRN	8997	broad.mit.edu	37	chr3	124237114	124237114	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtatttttcaggttgcactCtgcactgggttactagaaat	9	7	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124237114	G	G	124237114	1	3	110	0	1	0	0	0	0	0	0	0	8045	928	32	4		4	KALRN	3	124237114	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	2603110	124237114	73785316	124	106767											
PLXNA1	5361	broad.mit.edu	37	chr3	126751201	126751201	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggagggagcagaggcctatCtgagcagcgcctggactctc	15	11	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126751201	G	G	126751201	1	3	110	0	1	0	0	0	0	0	0	0	12214	928	32	4		4	PLXNA1	3	126751201	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	2514087	126751201	71271229	125	106768											
KIAA1257	57501	broad.mit.edu	37	chr3	128695987	128695987	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagggcccctgacccatttCtgtaatgtcagtctctatgc	9	12	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128695987	T	T	128695987	1	4	110	0	1	0	0	0	0	0	0	0	8288	928	32	4		4	KIAA1257	3	128695987	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1944786	128695987	69326443	126	106769											
DNAJC13	23317	broad.mit.edu	37	chr3	132184797	132184797	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattcctttctgttctagctGagataaagcagcaaaccttt	6	9	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132184797	C	C	132184797	1	2	110	0	1	0	0	0	0	0	0	0	4672	1305	45	4		4	DNAJC13	3	132184797	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3488810	132184797	65837633	127	106770											
DNAJC13	23317	broad.mit.edu	37	chr3	132184964	132184964	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcctaataaaatttaattGaacaagttatctgtactgtt	5	6	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132184964	A	A	132184964	1	1	110	0	1	0	0	0	0	0	0	0	4672	1305	45	4		4	DNAJC13	3	132184964	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	167	132184964	65837466	128	106771											
DNAJC13	23317	broad.mit.edu	37	chr3	132196902	132196902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgtttatgtttacaagCccttgctattgtttatggca	9	6	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132196902	A	A	132196902	3	1	110	1	0	0	0	0	1	0	0	0	4672	739	26	3	2717	3	DNAJC13	3	132196902	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	11938	132196902	65825528	129	106772											
TMEM108	66000	broad.mit.edu	37	chr3	133099400	133099400	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggacaagccaggccttcgcaGagcagcccaggggggtggtt	17	11	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133099400	A	A	133099400	3	1	110	1	0	0	0	0	1	0	0	0	16147	942	33	4	851	4	TMEM108	3	133099400	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	902498	133099400	64923030	130	106773											
CPA3	1359	broad.mit.edu	37	chr3	148596502	148596502	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcgtattaaaattggatcTactgttgaagataatccact	6	7	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148596502	C	C	148596502	2	2	110	1	0	0	0	0	0	0	0	1	3823	1509	53	5		5	CPA3	3	148596502	Silent	SNP	T	TCGA-44-2662-01A-01D-0969-08	15497102	148596502	49425928	131	106774											
TSC22D2	9819	broad.mit.edu	37	chr3	150128747	150128747	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtacccgcgcctctggcccAgtcgcaacagctgagcagcc	11	17	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150128747	T	T	150128747	3	4	110	1	0	0	0	0	1	0	0	0	16733	188	7	5	1612	5	TSC22D2	3	150128747	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	1532245	150128747	47893683	132	106775											
MME	4311	broad.mit.edu	37	chr3	154836503	154836503	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttctatattcactgaatGatttattttcttttatgtat	3	5	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154836503	A	A	154836503	1	1	110	0	1	0	0	0	0	0	0	0	9738	1305	45	4		4	MME	3	154836503	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	4707756	154836503	43185927	133	106776											
SMC4	10051	broad.mit.edu	37	chr3	160141144	160141147	+	Intron	DEL	TTTG	-	-													tttattcctatgggttttttTttgtttttttttttgagttt					rs4679884		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160141147	-	-	160141144	6	5	110	0	1	1	0	1	0	0	0	0	14899	1856	64	0		0	SMC4	3	160141144	Intron	DEL	TTTG	TCGA-44-2662-01A-01D-0969-08	5304641	160141144	37881286	134	106777											
BCHE	590	broad.mit.edu	37	chr3	165548362	165548362	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacttgccatcataaacatGtaaagatgatgttccagttt	6	7	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165548362	A	A	165548362	3	1	110	1	0	0	0	0	1	0	0	0	1363	1377	48	4	1360	4	BCHE	3	165548362	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	5407218	165548362	32474068	135	106778											
ZBBX	79740	broad.mit.edu	37	chr3	166958699	166958699	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actgaattttggtatctcttCcagaacagctgaaaatacat	6	8	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166958699	T	T	166958699	3	4	110	1	0	0	0	0	1	0	0	0	17643	855	30	4	121	4	ZBBX	3	166958699	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1410337	166958699	31063731	136	106779											
WDR49	151790	broad.mit.edu	37	chr3	167293690	167293690	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttaggagagtgaaagaaAagaaagcatcattacctgct	10	5	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167293690	T	T	167293690	1	4	110	0	1	0	0	0	0	0	0	0	17429	29	1	5		5	WDR49	3	167293690	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	334991	167293690	30728740	137	106780											
FXR1	8087	broad.mit.edu	37	chr3	180671582	180671582	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaaaaaaggctagaggtttCttggaatttgtggaggattt	13	2	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180671582	T	T	180671582	2	4	110	1	0	0	0	0	0	0	0	1	6175	912	32	4		4	FXR1	3	180671582	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	13377892	180671582	17350848	138	106781											
ALG3	10195	broad.mit.edu	37	chr3	183960694	183960694	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaactggtagtggagggagCggctgaagcagatgccaatg	17	6	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183960694	T	T	183960694	3	4	110	1	0	0	0	0	1	0	0	0	520	768	27	4	263	4	ALG3	3	183960694	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	3289112	183960694	14061736	139	106782											
CLCN2	1181	broad.mit.edu	37	chr3	184076691	184076691	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactgtcccctctcccccatCagcagctctaatggcctctg	6	18	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184076691	T	T	184076691	1	4	110	0	1	0	0	0	0	0	0	0	3494	841	29	4		4	CLCN2	3	184076691	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	115997	184076691	13945739	140	106783											
MAP3K13	9175	broad.mit.edu	37	chr3	185169074	185169074	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgtctttttcacttttaGgcagagtaaacctcgaaacc	6	10	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185169074	A	A	185169074	5	1	110	1	0	0	0	0	0	0	1	0	9339	1014	35	4	1191	4	MAP3K13	3	185169074	Splice_Site	SNP	G	TCGA-44-2662-01A-01D-0969-08	1092383	185169074	12853356	141	106784											
PIGX	54965	broad.mit.edu	37	chr3	196460684	196460684	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactgactgtacatacctctCtagtatgttctgtgactctg	8	10	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196460684	G	G	196460684	3	3	110	1	0	0	0	0	1	0	0	0	11998	912	32	4	768	4	PIGX	3	196460684	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	11291610	196460684	1561746	142	106785											
STX18	53407	broad.mit.edu	37	chr4	4473515	4473515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattaatagagaataaaaTgcaaattgcagaaagattct	6	3	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4473515	C	C	4473515	1	2	110	0	1	0	0	0	0	0	0	0	15459	1479	51	5		5	STX18	4	4473515	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08		4473515	186680761	143	106786											
JAKMIP1	152789	broad.mit.edu	37	chr4	6051524	6051524	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaacaagaacacgaaagcaGaaaccgatcgctcatagtta	7	9	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6051524	C	C	6051524	1	2	110	0	1	0	0	0	0	0	0	0	8010	957	33	4		4	JAKMIP1	4	6051524	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1578009	6051524	185102752	144	106787											
LCORL	254251	broad.mit.edu	37	chr4	17963471	17963471	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacttttgtgtaaaaaaattCcaacattttacatctctatt	2	7	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17963471	T	T	17963471	1	4	110	0	1	0	0	0	0	0	0	0	8762	870	30	4		4	LCORL	4	17963471	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	11911947	17963471	173190805	145	106788											
EXOC1	55763	broad.mit.edu	37	chr4	56737273	56737273	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcatatattctagaaccacAtggacttggccaaaggtcat	8	9	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56737273	G	G	56737273	3	3	110	1	0	0	0	0	1	0	0	0	5343	217	8	5	860	5	EXOC1	4	56737273	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	38773802	56737273	134417003	146	106789											
EXOC1	55763	broad.mit.edu	37	chr4	56768497	56768497	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttagccattgtttcttttCatttccttgaagcatttctt	4	9	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56768497	T	T	56768497	1	4	110	0	1	0	0	0	0	0	0	0	5343	841	29	4		4	EXOC1	4	56768497	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	31224	56768497	134385779	147	106790											
SULT1B1	27284	broad.mit.edu	37	chr4	70596267	70596267	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccatcactgtagttggtaGatgtgtataatttaccaaag	8	6	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70596267	A	A	70596267	2	1	110	1	0	0	0	0	0	0	0	1	15494	933	33	4		4	SULT1B1	4	70596267	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	13827770	70596267	120558009	148	106791											
GC	2638	broad.mit.edu	37	chr4	72634141	72634141	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaattttctactgtacagGactagtgacctgaggggaaa	12	6	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72634141	T	T	72634141	2	4	110	1	0	0	0	0	0	0	0	1	6344	1161	41	3		3	GC	4	72634141	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	2037874	72634141	118520135	149	106792											
CCNG2	901	broad.mit.edu	37	chr4	78081871	78081871	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagcctcttgtttttttctCaggtgaaacctaaacatttg	7	8	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78081871	G	G	78081871	1	3	110	0	1	0	0	0	0	0	0	0	2954	841	29	4		4	CCNG2	4	78081871	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	5447730	78081871	113072405	150	106793											
BMP2K	55589	broad.mit.edu	37	chr4	79793823	79793823	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgctagctcaacatcagcCgtctcaacaacaggcatcac	7	14	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79793823	T	T	79793823	3	4	110	1	0	0	0	0	1	0	0	0	1466	652	23	4	1714	4	BMP2K	4	79793823	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1711952	79793823	111360453	151	106794											
MMRN1	22915	broad.mit.edu	37	chr4	90857737	90857737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaacagaatttgtggaacCaataattcaaataaaaactc	4	7	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90857737	A	A	90857737	3	1	110	1	0	0	0	0	1	0	0	0	9764	594	21	2	2928	2	MMRN1	4	90857737	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	11063914	90857737	100296539	152	106795											
BMPR1B	658	broad.mit.edu	37	chr4	96044877	96044877	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttgtgcgtgatacttagCaagtacctttaggaaagagt	10	5	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96044877	G	G	96044877	1	3	110	0	1	0	0	0	0	0	0	0	1476	725	25	4		4	BMPR1B	4	96044877	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	5187140	96044877	95109399	153	106796											
DKK2	27123	broad.mit.edu	37	chr4	107845160	107845160	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttggaggagtaggtggcaTctttccatactttgcaagac	11	8	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107845160	C	C	107845160	3	2	110	1	0	0	0	0	1	0	0	0	4585	1435	50	5	52	5	DKK2	4	107845160	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	11800283	107845160	83309116	154	106797											
SEC24D	9871	broad.mit.edu	37	chr4	119745872	119745873	+	Frame_Shift_Ins	INS	-	G	G													aacattcccctagtggcggtINSggcccccaaaggccctgctg							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119745873	G	G	119745872	7	5	110	1	0	1	1	0	0	0	0	0	14110	1696	59	0	3031	0	SEC24D	4	119745872	Frame_Shift_Ins	INS	-	TCGA-44-2662-01A-01D-0969-08	11900712	119745872	71408404	155	106798											
MFSD8	256471	broad.mit.edu	37	chr4	128842758	128842758	+	Frame_Shift_Del	DEL	A	-	-													gatagcctaatcctattagcAcagctgatgtaaggaactgg							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128842758	-	-	128842758	7	5	110	1	0	1	0	1	0	0	0	0	9631	159	6	0	293	0	MFSD8	4	128842758	Frame_Shift_Del	DEL	A	TCGA-44-2662-01A-01D-0969-08	9096886	128842758	62311518	156	106799											
PALLD	23022	broad.mit.edu	37	chr4	169630396	169630396	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggccaggtgcagtggctCacacctgtaatcccagcact	10	15	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169630396	T	T	169630396	1	4	110	0	1	0	0	0	0	0	0	0	11501	841	29	4		4	PALLD	4	169630396	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	40787638	169630396	21523880	157	106800											
UFSP2	55325	broad.mit.edu	37	chr4	186343595	186343595	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaataatctcagtatatttCactatcaattttctaataaa	2	6	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186343595	T	T	186343595	1	4	110	0	1	0	0	0	0	0	0	0	17064	841	29	4		4	UFSP2	4	186343595	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	16713199	186343595	4810681	158	106801											
KLKB1	3818	broad.mit.edu	37	chr4	187149394	187149394	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttcatttccttgtttgcTacagtttcctgtggtaagtg	8	7	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187149394	A	A	187149394	2	1	110	1	0	0	0	0	0	0	0	1	8483	1509	53	5		5	KLKB1	4	187149394	Silent	SNP	T	TCGA-44-2662-01A-01D-0969-08	805799	187149394	4004882	159	106802											
SLC12A7	10723	broad.mit.edu	37	chr5	1074629	1074629	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccactcaaaggccgacctCagaaacagctcttctgtgcg	8	16	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1074629	G	G	1074629	1	3	110	0	1	0	0	0	0	0	0	0	14501	841	29	4		4	SLC12A7	5	1074629	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08		1074629	179840631	160	106803											
SLC12A7	10723	broad.mit.edu	37	chr5	1089245	1089245	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcccatgcgcggagccTgcgacagagcatagcgtgtc	15	12	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1089245	A	A	1089245	5	1	110	1	0	0	0	0	0	0	1	0	14501	1594	55	5	2994	5	SLC12A7	5	1089245	Splice_Site	SNP	T	TCGA-44-2662-01A-01D-0969-08	14616	1089245	179826015	161	106804											
WDR70	55100	broad.mit.edu	37	chr5	37443278	37443278	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggattaaagaacagaaatggGaggttataattgaccatatg	11	3	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37443278	A	A	37443278	1	1	110	0	1	0	0	0	0	0	0	0	17448	1189	41	4		4	WDR70	5	37443278	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	36354033	37443278	143471982	162	106805											
CARD6	84674	broad.mit.edu	37	chr5	40852233	40852233	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagtcgatggggaaaattGaaactctgaacatggcattc	11	6	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40852233	A	A	40852233	1	1	110	0	1	0	0	0	0	0	0	0	2676	1305	45	4		4	CARD6	5	40852233	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3408955	40852233	140063027	163	106806											
FBXO4	26272	broad.mit.edu	37	chr5	41927057	41927057	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgttgattatgtggtttatCacccaaaaactattttcttc	5	7	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41927057	T	T	41927057	1	4	110	0	1	0	0	0	0	0	0	0	5805	841	29	4		4	FBXO4	5	41927057	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1074824	41927057	138988203	164	106807											
HCN1	348980	broad.mit.edu	37	chr5	45267266	45267266	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattcctccaggacctcgtTgaaattgtccacggaaagtg	9	10	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45267266	A	A	45267266	3	1	110	1	0	0	0	0	1	0	0	0	7062	1812	63	5	972	5	HCN1	5	45267266	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	3340209	45267266	135647994	165	106808											
PARP8	79668	broad.mit.edu	37	chr5	50074342	50074342	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtttgtgtgttttttttttCattttgaactctaaaagatg	7	3	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50074342	G	G	50074342	1	3	110	0	1	0	0	0	0	0	0	0	11559	841	29	4		4	PARP8	5	50074342	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	4807076	50074342	130840918	166	106809											
MAP3K1	4214	broad.mit.edu	37	chr5	56183268	56183268	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagattttggagctgcagCcaggttggcatcaaaaggaa	13	7	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56183268	G	G	56183268	3	3	110	1	0	0	0	0	1	0	0	0	9335	739	26	4	4248	4	MAP3K1	5	56183268	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	6108926	56183268	124731992	167	106810											
ADAMTS6	11174	broad.mit.edu	37	chr5	64747521	64747521	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttaaaacttttgaagactGaagtgggactataattagaa	9	3	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64747521	A	A	64747521	1	1	110	0	1	0	0	0	0	0	0	0	270	1305	45	4		4	ADAMTS6	5	64747521	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	8564253	64747521	116167739	168	106811											
COL4A3BP	10087	broad.mit.edu	37	chr5	74806913	74806913	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtgagtctggccaggggtCccttggcaccaggggttgct	17	10	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74806913	T	T	74806913	1	4	110	0	1	0	0	0	0	0	0	0	3724	870	30	4		4	COL4A3BP	5	74806913	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	10059392	74806913	106108347	169	106812											
POLK	51426	broad.mit.edu	37	chr5	74880722	74880722	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattatttccttcatatctcCttgggtctaggttcaacaca	5	11	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74880722	T	T	74880722	2	4	110	1	0	0	0	0	0	0	0	1	12299	668	24	4		4	POLK	5	74880722	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	73809	74880722	106034538	170	106813											
CRHBP	1393	broad.mit.edu	37	chr5	76254547	76254547	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtaaaggaaacgtgaatttCtttttcttttctacaaagct	6	6	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76254547	G	G	76254547	1	3	110	0	1	0	0	0	0	0	0	0	3902	928	32	4		4	CRHBP	5	76254547	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1373825	76254547	104660713	171	106814											
CETN3	1070	broad.mit.edu	37	chr5	89695226	89695226	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcatagctcgaagttcttCatcactcatgttttcaccca	4	12	6	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89695226	A	A	89695226	4	1	110	1	0	0	0	0	0	1	0	0	3306	835	29	3	102	3	CETN3	5	89695226	Nonsense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	13440679	89695226	91220034	172	106815											
MCTP1	79772	broad.mit.edu	37	chr5	94248517	94248517	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagacaaggttaccttgctCttgtacttctgatgcccaag	9	10	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94248517	G	G	94248517	3	3	110	1	0	0	0	0	1	0	0	0	9493	912	32	4	1544	4	MCTP1	5	94248517	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	4553291	94248517	86666743	173	106816											
LNPEP	4012	broad.mit.edu	37	chr5	96350700	96350700	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaattatcttggaaatgaGaaccatactgcacccatcac	5	10	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96350700	A	A	96350700	2	1	110	1	0	0	0	0	0	0	0	1	8938	933	33	4		4	LNPEP	5	96350700	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	2102183	96350700	84564560	174	106817											
UQCRQ	27089	broad.mit.edu	37	chr5	132203218	132203218	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatctacacatgggggactGaagagttcgagagatccaag	12	7	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132203218	C	C	132203218	3	2	110	1	0	0	0	0	1	0	0	0	17150	1291	45	4	199	4	UQCRQ	5	132203218	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	35852518	132203218	48712042	175	106818											
KLHL3	26249	broad.mit.edu	37	chr5	136963999	136963999	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattacctgcgttgcgccgGcacatgttcatgtctgccac	9	14	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136963999	T	T	136963999	4	4	110	1	0	0	0	0	0	1	0	0	8454	1195	42	3	197	3	KLHL3	5	136963999	Nonsense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	4760781	136963999	43951261	176	106819											
KIF20A	10112	broad.mit.edu	37	chr5	137518700	137518700	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtatgtaccgtgactgggctCtgccaaaaaatagtaggaac	11	8	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137518700	T	T	137518700	1	4	110	0	1	0	0	0	0	0	0	0	8356	928	32	4		4	KIF20A	5	137518700	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	554701	137518700	43396560	177	106820											
KDM3B	51780	broad.mit.edu	37	chr5	137713559	137713559	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaactctgattcaggtgaAtgatcactgttgagtgatag	11	6	3	6			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137713559	G	G	137713559	1	3	110	0	1	0	0	0	0	0	0	0	8197	116	4	5		5	KDM3B	5	137713559	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	194859	137713559	43201701	178	106821											
PCDHA8	56140	broad.mit.edu	37	chr5	140222842	140222842	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcggactctccgcgccacCgtctgctggtcctggtgaag	13	14	2	1	rs146582216		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140222842	T	T	140222842	3	4	110	1	0	0	0	0	1	0	0	0	11624	652	23	4	1938	4	PCDHA8	5	140222842	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	2509283	140222842	40692418	179	106822											
SH3RF2	153769	broad.mit.edu	37	chr5	145379542	145379542	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgttaaagcaaagtacaaTaaaagggggaatgcttgtat	10	4	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145379542	C	C	145379542	1	2	110	0	1	0	0	0	0	0	0	0	14372	1421	49	5		5	SH3RF2	5	145379542	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	5156700	145379542	35535718	180	106823											
JAKMIP2	9832	broad.mit.edu	37	chr5	146997641	146997641	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gataacagtttcttgctgtaGagcattgtacaaagtagctt	9	6	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146997641	C	C	146997641	3	2	110	1	0	0	0	0	1	0	0	0	8011	933	33	4	265	4	JAKMIP2	5	146997641	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	1618099	146997641	33917619	181	106824											
PDGFRB	5159	broad.mit.edu	37	chr5	149514487	149514487	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcaccaccagctgtgggtCtgttactcggcatggaatgg	13	10	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149514487	G	G	149514487	3	3	110	1	0	0	0	0	1	0	0	0	11756	913	32	4	2943	4	PDGFRB	5	149514487	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	2516846	149514487	31400773	182	106825											
GEMIN5	25929	broad.mit.edu	37	chr5	154299374	154299374	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactcctaagatatataactCacaaattcatgcacagcctt	4	11	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154299374	G	G	154299374	1	3	110	0	1	0	0	0	0	0	0	0	6395	841	29	4		4	GEMIN5	5	154299374	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	4784887	154299374	26615886	183	106826			1	84		3	3	334	C		1.626364e-05
GEMIN5	25929	broad.mit.edu	37	chr5	154299691	154299691	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataagaaaagaaacttatCagttttgtacttcatcagct	5	6	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154299691	T	T	154299691	1	4	110	0	1	0	0	0	0	0	0	0	6395	841	29	4		4	GEMIN5	5	154299691	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	317	154299691	26615569	184	106827			1	84		3	3	334	C		1.626364e-05
GEMIN5	25929	broad.mit.edu	37	chr5	154299707	154299707	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatcagttttgtacttcatCagcttaactatttgttgcta	5	7	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154299707	A	A	154299707	1	1	110	0	1	0	0	0	0	0	0	0	6395	841	29	3		3	GEMIN5	5	154299707	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	16	154299707	26615553	185	106828			1	84		3	3	334	C		1.626364e-05
CYFIP2	26999	broad.mit.edu	37	chr5	156755057	156755057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaagccatggctggcaGgtaggaaagccccagagctg	13	11	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156755057	T	T	156755057	3	4	110	1	0	0	0	0	1	0	0	0	4171	1014	35	2	2226	2	CYFIP2	5	156755057	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2455350	156755057	24160203	186	106829											
NIPAL4	348938	broad.mit.edu	37	chr5	156899773	156899773	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accatcatcttgggcgtgttCatgctgcatgctttcaaaga	9	10	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156899773	G	G	156899773	3	3	110	1	0	0	0	0	1	0	0	0	10522	825	29	4	1228	4	NIPAL4	5	156899773	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	144716	156899773	24015487	187	106830											
CPEB4	80315	broad.mit.edu	37	chr5	173383198	173383198	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgcactcttctgttcattCtgaccccttcctcaacctct	4	16	6	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173383198	T	T	173383198	1	4	110	0	1	0	0	0	0	0	0	0	3835	928	32	4		4	CPEB4	5	173383198	3'UTR	SNP	C	TCGA-44-2662-01A-01D-0969-08	16483425	173383198	7532062	188	106831											
NOP16	51491	broad.mit.edu	37	chr5	175812222	175812222	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggggcctgagccgctcacCttatagtcctccccgtggtt	11	15	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175812222	T	T	175812222	2	4	110	1	0	0	0	0	0	0	0	1	10632	695	24	4		4	NOP16	5	175812222	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	2429024	175812222	5103038	189	106832											
GRK6	2870	broad.mit.edu	37	chr5	176859748	176859748	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtcccccggcagctggtgacGaactgcacccagcggctgga	14	15	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176859748	C	C	176859748	2	2	110	1	0	0	0	0	0	0	0	1	6859	1045	37	4		4	GRK6	5	176859748	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	1047526	176859748	4055512	190	106833											
GRK6	2870	broad.mit.edu	37	chr5	176867754	176867754	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgaacagttctctacggtCaagggcgtggagctggagcc	14	9	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176867754	T	T	176867754	2	4	110	1	0	0	0	0	0	0	0	1	6859	813	29	4		4	GRK6	5	176867754	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	8006	176867754	4047506	191	106834											
RUFY1	80230	broad.mit.edu	37	chr5	178996340	178996340	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggctttaatgatggaggaaGaagggatggtgattgttggt	17	1	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178996340	A	A	178996340	3	1	110	1	0	0	0	0	1	0	0	0	13849	943	33	4	760	4	RUFY1	5	178996340	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2128586	178996340	1918920	192	106835											
TRIM7	81786	broad.mit.edu	37	chr5	180622504	180622504	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttagagcccacctccacctCccagtgatgccggcccgagg	10	18	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180622504	G	G	180622504	3	3	110	1	0	0	0	0	1	0	0	0	16668	864	30	4	341	4	TRIM7	5	180622504	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1626164	180622504	292756	193	106836											
RREB1	6239	broad.mit.edu	37	chr6	7240517	7240518	+	Intron	INS	-	T	T													atcattttagtcattgatggINStttttttttttctaatgtgt							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7240518	T	T	7240517	6	5	110	0	1	1	1	0	0	0	0	0	13790	1276	44	0		0	RREB1	6	7240517	Intron	INS	-	TCGA-44-2662-01A-01D-0969-08		7240517	163874550	194	106837											
COL11A2	1302	broad.mit.edu	37	chr6	33138503	33138503	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaggccctccagtctgcatCggcaggctgctggcagagtc	14	14	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33138503	T	T	33138503	1	4	110	0	1	0	0	0	0	0	0	0	3700	899	31	4		4	COL11A2	6	33138503	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	25897986	33138503	137976564	195	106838											
DNAH8	1769	broad.mit.edu	37	chr6	38790666	38790666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaatttttacccgggGgtagcggagcacaaggatat	13	7	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38790666	T	T	38790666	2	4	110	1	0	0	0	0	0	0	0	1	4647	1219	43	2		2	DNAH8	6	38790666	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	5652163	38790666	132324401	196	106839											
SLC35B2	347734	broad.mit.edu	37	chr6	44222317	44222317	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccccaatcccctgctgcaGagctggtctgtgatactgag	10	14	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44222317	C	C	44222317	1	2	110	0	1	0	0	0	0	0	0	0	14690	957	33	4		4	SLC35B2	6	44222317	3'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	5431651	44222317	126892750	197	106840											
SLC35B2	347734	broad.mit.edu	37	chr6	44222521	44222521	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggccccgcgcgtagactctGagcaggagggcagcaaagac	15	13	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44222521	C	C	44222521	2	2	110	1	0	0	0	0	0	0	0	1	14690	1277	45	4		4	SLC35B2	6	44222521	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	204	44222521	126892546	198	106841											
MUT	4594	broad.mit.edu	37	chr6	49425625	49425625	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aactgacattttttctaaagGaattccatcaaaaagaattt	4	6	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49425625	C	C	49425625	3	2	110	1	0	0	0	0	1	0	0	0	10085	1174	41	4	1764	4	MUT	6	49425625	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	5203104	49425625	121689442	199	106842											
PKHD1	5314	broad.mit.edu	37	chr6	51889442	51889442	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagatgaggcccaccctctGatgcagtcatagcctctgac	10	14	3	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51889442	A	A	51889442	2	1	110	1	0	0	0	0	0	0	0	1	12066	1280	45	4		4	PKHD1	6	51889442	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	2463817	51889442	119225625	200	106843											
PKHD1	5314	broad.mit.edu	37	chr6	51929718	51929718	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatcatgattaaagatattCagagtttattgaacagccct	6	8	2	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51929718	T	T	51929718	1	4	110	0	1	0	0	0	0	0	0	0	12066	841	29	4		4	PKHD1	6	51929718	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	40276	51929718	119185349	201	106844											
EFHC1	114327	broad.mit.edu	37	chr6	52329944	52329944	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtacttcttagtgtggtgaGaaaactaattttttgaggta	10	3	1	2	rs115160207	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52329944	A	A	52329944	1	1	110	0	1	0	0	0	0	0	0	0	4986	957	33	4		4	EFHC1	6	52329944	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	400226	52329944	118785123	202	106845											
ELOVL5	60481	broad.mit.edu	37	chr6	53156718	53156718	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgacagagcagataaatgtGggtatataattgtccagaag	11	4	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53156718	A	A	53156718	2	1	110	1	0	0	0	0	0	0	0	1	5119	1335	47	4		4	ELOVL5	6	53156718	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	826774	53156718	117958349	203	106846											
DST	667	broad.mit.edu	37	chr6	56346986	56346987	+	Intron	DEL	CA	-	-													aattcctctgcctaagagttCacacacacacacaccccaaa							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56346987	-	-	56346986	6	5	110	0	1	1	0	1	0	0	0	0	4823	841	29	0		0	DST	6	56346986	Intron	DEL	CA	TCGA-44-2662-01A-01D-0969-08	3190268	56346986	114768081	204	106847											
COL19A1	1310	broad.mit.edu	37	chr6	70859806	70859806	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggaatgatgtaaggactTtctttatctaccctccccca	7	12	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70859806	G	G	70859806	1	3	110	0	1	0	0	0	0	0	0	0	3708	1856	64	5		5	COL19A1	6	70859806	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	14512820	70859806	100255261	205	106848											
LIN28B	389421	broad.mit.edu	37	chr6	105406166	105406166	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttgtacaccaagtaaGccaaacttttttgtccccct	5	11	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105406166	C	C	105406166	1	2	110	0	1	0	0	0	0	0	0	0	8879	986	34	4		4	LIN28B	6	105406166	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	34546360	105406166	65708901	206	106849											
RTN4IP1	84816	broad.mit.edu	37	chr6	107069280	107069280	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaactttctaatgcatttCagcagagttggtaagttacc	7	7	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107069280	T	T	107069280	1	4	110	0	1	0	0	0	0	0	0	0	13840	841	29	4		4	RTN4IP1	6	107069280	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1663114	107069280	64045787	207	106850											
LAMA4	3910	broad.mit.edu	37	chr6	112437028	112437028	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagatctagaatccaaggtCagatgagacaaattgttaaa	8	6	3	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112437028	G	G	112437028	1	3	110	0	1	0	0	0	0	0	0	0	8680	841	29	4		4	LAMA4	6	112437028	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	5367748	112437028	58678039	208	106851											
PTPRK	5796	broad.mit.edu	37	chr6	128321381	128321381	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attaacagataaacatatttCaagtgctagtacatttgcct	5	7	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128321381	G	G	128321381	1	3	110	0	1	0	0	0	0	0	0	0	12913	841	29	4		4	PTPRK	6	128321381	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	15884353	128321381	42793686	209	106852											
ENPP1	5167	broad.mit.edu	37	chr6	132190304	132190304	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acattaaccaaaatttgggtGacggaaaagattttgaaaaa	8	4	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132190304	T	T	132190304	1	4	110	0	1	0	0	0	0	0	0	0	5171	1305	45	3		3	ENPP1	6	132190304	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3868923	132190304	38924763	210	106853											
TAAR9	134860	broad.mit.edu	37	chr6	132859813	132859813	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttatgctgtatctctgttGatagatacattgctgttact	7	6	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132859813	T	T	132859813	3	4	110	1	0	0	0	0	1	0	0	0	15613	1290	45	3	387	3	TAAR9	6	132859813	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	669509	132859813	38255254	211	106854											
GPR126	57211	broad.mit.edu	37	chr6	142623349	142623349	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcgtaaaggagggtcccGccgcggcgcagggctggggc	20	12	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142623349	T	T	142623349	1	4	110	0	1	0	0	0	0	0	0	0	6705	1102	38	3		3	GPR126	6	142623349	5'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	9763536	142623349	28491718	212	106855											
UTRN	7402	broad.mit.edu	37	chr6	144875739	144875739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtttatagacttatttGtgatacatttgatatatgat	6	3	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144875739	T	T	144875739	1	4	110	0	1	0	0	0	0	0	0	0	17230	1392	48	3		3	UTRN	6	144875739	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2252390	144875739	26239328	213	106856											
UTRN	7402	broad.mit.edu	37	chr6	145103245	145103245	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtgtctcaattggttgctCaatgtctatgacacgtaagt	9	7	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145103245	G	G	145103245	2	3	110	1	0	0	0	0	0	0	0	1	17230	813	29	4		4	UTRN	6	145103245	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	227506	145103245	26011822	214	106857											
ULBP3	79465	broad.mit.edu	37	chr6	150385794	150385794	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaggaagctccagggactGagggtggtggctatggcttt	17	6	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150385794	C	C	150385794	2	2	110	1	0	0	0	0	0	0	0	1	17100	1277	45	4		4	ULBP3	6	150385794	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	5282549	150385794	20729273	215	106858											
PLEKHG1	57480	broad.mit.edu	37	chr6	151151947	151151951	+	Frame_Shift_Del	DEL	CCTCC	-	-													gatgttcgtgccgtcattttCctcctcagatctgaactcta							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151151951	-	-	151151947	7	5	110	1	0	1	0	1	0	0	0	0	12163	855	30	0	1754	0	PLEKHG1	6	151151947	Frame_Shift_Del	DEL	CCTCC	TCGA-44-2662-01A-01D-0969-08	766153	151151947	19963120	216	106859											
QKI	9444	broad.mit.edu	37	chr6	163836962	163836962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttagtttaaagaaattccGtaggagaccgaaattatgct	9	6	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163836962	T	T	163836962	1	4	110	0	1	0	0	0	0	0	0	0	12981	1160	40	3		3	QKI	6	163836962	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	12685015	163836962	7278105	217	106860											
CARD11	84433	broad.mit.edu	37	chr7	2966466	2966467	+	Intron	DEL	GT	-	-													gggggaaagcatgcatgtgaGtgtgtgtgtgtgtgcacacg							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2966467	-	-	2966466	6	5	110	0	1	1	0	1	0	0	0	0	2671	1044	36	0		0	CARD11	7	2966466	Intron	DEL	GT	TCGA-44-2662-01A-01D-0969-08		2966466	156172197	218	106861											
ACTB	60	broad.mit.edu	37	chr7	5567249	5567249	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtttttaaatcctgagtCaagccaaaaaaaaaaaaaaa	4	7	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5567249	T	T	5567249	1	4	110	0	1	0	0	0	0	0	0	0	193	841	29	4		4	ACTB	7	5567249	3'UTR	SNP	C	TCGA-44-2662-01A-01D-0969-08	2600783	5567249	153571414	219	106862											
TRA2A	29896	broad.mit.edu	37	chr7	23571409	23571409	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccgcggctttgtactcactCtgccctcgaagttgttttcc	8	15	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23571409	G	G	23571409	3	3	110	1	0	0	0	0	1	0	0	0	16557	927	32	4	845	4	TRA2A	7	23571409	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	18004160	23571409	135567254	220	106863											
DFNA5	1687	broad.mit.edu	37	chr7	24756942	24756942	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtggtggcagctgggatctCcagcaccacgttggagtcct	15	11	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24756942	A	A	24756942	4	1	110	1	0	0	0	0	0	1	0	0	4494	864	30	3	886	3	DFNA5	7	24756942	Nonsense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1185533	24756942	134381721	221	106864											
ZNRF2	223082	broad.mit.edu	37	chr7	30329309	30329309	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaagtttctgctttgggAattttttggaattattcttg	10	3	2	0	rs13307957		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30329309	G	G	30329309	1	3	110	0	1	0	0	0	0	0	0	0	18341	261	9	5		5	ZNRF2	7	30329309	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	5572367	30329309	128809354	222	106865											
GARS	2617	broad.mit.edu	37	chr7	30661020	30661020	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttttagggttggattgaGattgttggatgtgctgatcg	14	3	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30661020	A	A	30661020	2	1	110	1	0	0	0	0	0	0	0	1	6304	933	33	4		4	GARS	7	30661020	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	331711	30661020	128477643	223	106866											
EEPD1	80820	broad.mit.edu	37	chr7	36324257	36324257	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccccaggtggcgctaggGctctggcaccaagactctgt	12	13	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36324257	A	A	36324257	1	1	110	0	1	0	0	0	0	0	0	0	4972	1218	42	4		4	EEPD1	7	36324257	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	5663237	36324257	122814406	224	106867											
ANLN	54443	broad.mit.edu	37	chr7	36429517	36429517	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggacagctggttgtgggaGagttcccccgcctcagactc	14	12	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36429517	C	C	36429517	1	2	110	0	1	0	0	0	0	0	0	0	694	957	33	4		4	ANLN	7	36429517	5'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	105260	36429517	122709146	225	106868											
C7orf25	79020	broad.mit.edu	37	chr7	42971544	42971544	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcctccgaccaaggaagCtccaggaatcccgggtcggc	13	15	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42971544	T	T	42971544	1	4	110	0	1	0	0	0	0	0	0	0	2405	812	28	4		4	C7orf25	7	42971544	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	6542027	42971544	116167119	226	106869											
PURB	5814	broad.mit.edu	37	chr7	44924761	44924761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaaccgcccgcgcccacctCggcgatcttgaggaagcggc	14	16	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44924761	T	T	44924761	3	4	110	1	0	0	0	0	1	0	0	0	12936	893	31	4	755	4	PURB	7	44924761	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1953217	44924761	114213902	227	106870											
ABCA13	154664	broad.mit.edu	37	chr7	48349715	48349715	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttgctgagtcgaaacttgGatgtgcgagctttcatttac	11	7	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48349715	C	C	48349715	3	2	110	1	0	0	0	0	1	0	0	0	31	1174	41	4	9416	4	ABCA13	7	48349715	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	3424954	48349715	110788948	228	106871											
ABCA13	154664	broad.mit.edu	37	chr7	48563896	48563896	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctaaggatacagatgttGaaaaagaggaaaagagagtg	12	3	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48563896	A	A	48563896	3	1	110	1	0	0	0	0	1	0	0	0	31	1291	45	4	14147	4	ABCA13	7	48563896	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	214181	48563896	110574767	229	106872											
COBL	23242	broad.mit.edu	37	chr7	51261203	51261203	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaaggttgttgggtttctGaagaccgaatttcaagggca	12	6	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51261203	A	A	51261203	3	1	110	1	0	0	0	0	1	0	0	0	3685	1294	45	4	3500	4	COBL	7	51261203	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2697307	51261203	107877460	230	106873											
AUTS2	26053	broad.mit.edu	37	chr7	70250923	70250923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctgaccatttccttctTccccatcttgtttgcagagc	6	16	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70250923	C	C	70250923	1	2	110	0	1	0	0	0	0	0	0	0	1230	1798	62	5		5	AUTS2	7	70250923	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	18989720	70250923	88887740	231	106874											
STX1A	6804	broad.mit.edu	37	chr7	73115039	73115039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgctggggcatggccttGggcagggctgggctactgac	20	9	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73115039	T	T	73115039	1	4	110	0	1	0	0	0	0	0	0	0	15461	1363	47	2		2	STX1A	7	73115039	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2864116	73115039	86023624	232	106875											
ABHD11	83451	broad.mit.edu	37	chr7	73150991	73150991	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcatctgggcccgagggaaGagccgcataatctcagggtg	15	10	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73150991	A	A	73150991	2	1	110	1	0	0	0	0	0	0	0	1	75	929	33	4		4	ABHD11	7	73150991	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	35952	73150991	85987672	233	106876											
CLDN4	1364	broad.mit.edu	37	chr7	73245494	73245494	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccccacagccggatcccctCagccttccaggtcctcaact	6	21	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73245494	T	T	73245494	1	4	110	0	1	0	0	0	0	0	0	0	3519	841	29	4		4	CLDN4	7	73245494	5'UTR	SNP	C	TCGA-44-2662-01A-01D-0969-08	94503	73245494	85893169	234	106877											
GTF2I	2969	broad.mit.edu	37	chr7	74114631	74114631	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accatatgagaagatgctgcGagaccagtcggctgtggtag	14	8	0	3	rs145729076		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74114631	A	A	74114631	3	1	110	1	0	0	0	0	1	0	0	0	6932	1058	37	4	442	4	GTF2I	7	74114631	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	869137	74114631	85024032	235	106878											
CCDC146	57639	broad.mit.edu	37	chr7	76889471	76889471	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggcaaacgagccttacttGaaatcaaagaacgagaacat	8	8	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76889471	C	C	76889471	3	2	110	1	0	0	0	0	1	0	0	0	2806	1291	45	4	930	4	CCDC146	7	76889471	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2774840	76889471	82249192	236	106879											
PCLO	27445	broad.mit.edu	37	chr7	82763878	82763878	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggcttttgtttcctttttCacaggtatactttttgcagg	10	7	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82763878	T	T	82763878	2	4	110	1	0	0	0	0	0	0	0	1	11677	813	29	4		4	PCLO	7	82763878	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	5874407	82763878	76374785	237	106880											
ABCB4	5244	broad.mit.edu	37	chr7	87037292	87037292	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaatattttccattatgaCaatattggttgggccaatta	6	7	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87037292	T	T	87037292	1	4	110	0	1	0	0	0	0	0	0	0	43	493	17	4		4	ABCB4	7	87037292	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	4273414	87037292	72101371	238	106881											
DBF4	10926	broad.mit.edu	37	chr7	87516281	87516281	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactggaaattacagatattCttgaaattttcctttccaca	4	8	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87516281	T	T	87516281	1	4	110	0	1	0	0	0	0	0	0	0	4281	928	32	4		4	DBF4	7	87516281	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	478989	87516281	71622382	239	106882											
DYNC1I1	1780	broad.mit.edu	37	chr7	95705561	95705561	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctgggaggggggcgcagtCggccactcgcagtctctccc	17	14	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95705561	A	A	95705561	1	1	110	0	1	0	0	0	0	0	0	0	4882	899	31	3		3	DYNC1I1	7	95705561	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	8189280	95705561	63433102	240	106883											
ASNS	440	broad.mit.edu	37	chr7	97486051	97486051	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagtttccaaggaaaatatGacttcatccagagcctgaat	7	8	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97486051	A	A	97486051	2	1	110	1	0	0	0	0	0	0	0	1	1052	1277	45	4		4	ASNS	7	97486051	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	1780490	97486051	61652612	241	106884											
TRRAP	8295	broad.mit.edu	37	chr7	98478962	98478962	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccagcactttgggaggccGaggcgggtggatcacctgat	15	11	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98478962	A	A	98478962	1	1	110	0	1	0	0	0	0	0	0	0	16726	1073	37	4		4	TRRAP	7	98478962	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	992911	98478962	60659701	242	106885											
TRRAP	8295	broad.mit.edu	37	chr7	98497313	98497313	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcttttagctctacaaactGaacatccacaatgttgttgc	6	10	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98497313	A	A	98497313	2	1	110	1	0	0	0	0	0	0	0	1	16726	1277	45	4		4	TRRAP	7	98497313	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	18351	98497313	60641350	243	106886											
CYP3A43	64816	broad.mit.edu	37	chr7	99447120	99447120	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgtgtgtatagcagaagGaaggtaaagaggtgctggtt	16	3	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99447120	A	A	99447120	1	1	110	0	1	0	0	0	0	0	0	0	4212	1189	41	4		4	CYP3A43	7	99447120	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	949807	99447120	59691543	244	106887											
STAG3	10734	broad.mit.edu	37	chr7	99786150	99786150	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctaacagagcagtttaatGaggtggaagaagatgaccag	12	6	0	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99786150	A	A	99786150	3	1	110	1	0	0	0	0	1	0	0	0	15362	1291	45	4	526	4	STAG3	7	99786150	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	339030	99786150	59352513	245	106888											
ZAN	7455	broad.mit.edu	37	chr7	100345114	100345114	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcctcctaggtatagtTcaaagtcgtttcccagtccc	6	14	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100345114	C	C	100345114	1	2	110	0	1	0	0	0	0	0	0	0	17640	1798	62	5		5	ZAN	7	100345114	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	558964	100345114	58793549	246	106889											
PLOD3	8985	broad.mit.edu	37	chr7	100853759	100853759	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggtgtccgtgatgcaggcGatgcctggagtctgggggac	20	8	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100853759	A	A	100853759	1	1	110	0	1	0	0	0	0	0	0	0	12198	1073	37	4		4	PLOD3	7	100853759	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	508645	100853759	58284904	247	106890											
SLC26A3	1811	broad.mit.edu	37	chr7	107416977	107416977	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgaaaattttcactccttCtggctcatacatctgtaagg	6	10	5	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107416977	T	T	107416977	3	4	110	1	0	0	0	0	1	0	0	0	14632	922	32	4	725	4	SLC26A3	7	107416977	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	6563218	107416977	51721686	248	106891											
PTPRZ1	5803	broad.mit.edu	37	chr7	121680889	121680889	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctcccagaaaggaagacCcagtggacgtgtggtcacac	14	11	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121680889	G	G	121680889	3	3	110	1	0	0	0	0	1	0	0	0	12922	623	22	4	5739	4	PTPRZ1	7	121680889	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	14263912	121680889	37457774	249	106892											
IQUB	154865	broad.mit.edu	37	chr7	123143207	123143207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattcaatgaaagctcaacCaagaagggactcaaaaatac	7	8	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123143207	A	A	123143207	1	1	110	0	1	0	0	0	0	0	0	0	7890	609	21	2		2	IQUB	7	123143207	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1462318	123143207	35995456	250	106893											
POT1	25913	broad.mit.edu	37	chr7	124503575	124503575	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttgtggtcctcagtagtGaagttaaaatacttgcttga	9	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124503575	A	A	124503575	2	1	110	1	0	0	0	0	0	0	0	1	12355	1281	45	4		4	POT1	7	124503575	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	1360368	124503575	34635088	251	106894											
SND1	27044	broad.mit.edu	37	chr7	127569508	127569508	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctcttcctctctggttgGgatatgcaaacacagtttct	8	10	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127569508	A	A	127569508	1	1	110	0	1	0	0	0	0	0	0	0	14958	1247	43	4		4	SND1	7	127569508	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3065933	127569508	31569155	252	106895											
RBM28	55131	broad.mit.edu	37	chr7	127961293	127961293	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaagatcagaatgaaagctCcaaaatggtcagggccacgt	10	10	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127961293	G	G	127961293	1	3	110	0	1	0	0	0	0	0	0	0	13236	870	30	4		4	RBM28	7	127961293	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	391785	127961293	31177370	253	106896											
FLNC	2318	broad.mit.edu	37	chr7	128489738	128489738	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccaaggaatcccacttctCtgagggctcctggggccaga	11	15	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128489738	G	G	128489738	1	3	110	0	1	0	0	0	0	0	0	0	5993	928	32	4		4	FLNC	7	128489738	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	528445	128489738	30648925	254	106897											
PLXNA4	91584	broad.mit.edu	37	chr7	131866497	131866497	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggggttgacaagaggattAgagatgagtcagggccacac	15	6	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131866497	T	T	131866497	1	4	110	0	1	0	0	0	0	0	0	0	12217	435	15	5		5	PLXNA4	7	131866497	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	3376759	131866497	27272166	255	106898											
EXOC4	60412	broad.mit.edu	37	chr7	133682421	133682421	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcccaggaccttgcaatttGaatgcactgcggttcataaa	9	10	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133682421	A	A	133682421	1	1	110	0	1	0	0	0	0	0	0	0	5348	1305	45	4		4	EXOC4	7	133682421	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1815924	133682421	25456242	256	106899											
BRAF	673	broad.mit.edu	37	chr7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttcatgaagaaatataTctgaggtgtagtaagtaaag	11	3	3	3	rs121913370		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140453193	C	C	140453193	3	2	110	1	0	0	0	0	1	0	0	0	1505	1449	50	5	574	5	BRAF	7	140453193	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	6770772	140453193	18685470	257	106900											
MLL3	58508	broad.mit.edu	37	chr7	152064995	152064995	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcgttcgcatgaaaaagtGattatcatccaacttattgc	7	8	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152064995	A	A	152064995	1	1	110	0	1	0	0	0	0	0	0	0	9715	1305	45	4		4	MLL3	7	152064995	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	11611802	152064995	7073668	258	106901											
UBE3C	9690	broad.mit.edu	37	chr7	156981717	156981717	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagatgcgtacatgaaaacCgggaagacacaggacagtat	11	8	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156981717	T	T	156981717	1	4	110	0	1	0	0	0	0	0	0	0	17007	667	23	4		4	UBE3C	7	156981717	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	4916722	156981717	2156946	259	106902											
CSMD1	64478	broad.mit.edu	37	chr8	2876054	2876054	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgccaagcactctctgacAtgagaccccacaagcgtgta	8	13	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2876054	G	G	2876054	2	3	110	1	0	0	0	0	0	0	0	1	3978	214	8	5		5	CSMD1	8	2876054	Silent	SNP	A	TCGA-44-2662-01A-01D-0969-08		2876054	143487968	260	106903											
PPP2R2A	5520	broad.mit.edu	37	chr8	26223870	26223870	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaaactctgttcactgtatGaaaatgactgcatatttgac	7	7	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26223870	A	A	26223870	3	1	110	1	0	0	0	0	1	0	0	0	12485	1291	45	4	1087	4	PPP2R2A	8	26223870	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	23347816	26223870	120140152	261	106904											
UNC5D	137970	broad.mit.edu	37	chr8	35425504	35425504	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaattaaaaccttgccttGattaaaaacaggattgttta	6	5	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35425504	C	C	35425504	1	2	110	0	1	0	0	0	0	0	0	0	17121	1305	45	4		4	UNC5D	8	35425504	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	9201634	35425504	110938518	262	106905											
LYN	4067	broad.mit.edu	37	chr8	56866476	56866476	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggataaagatgcctgggaGatcccccgggagtccatcaa	13	10	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56866476	C	C	56866476	3	2	110	1	0	0	0	0	1	0	0	0	9195	933	33	4	749	4	LYN	8	56866476	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	21440972	56866476	89497546	263	106906											
SLCO5A1	81796	broad.mit.edu	37	chr8	70617351	70617351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaacatagtaaagacaCaccactgcagatcattgcta	6	9	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70617351	A	A	70617351	3	1	110	1	0	0	0	0	1	0	0	0	14845	478	17	3	1029	3	SLCO5A1	8	70617351	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	13750875	70617351	75746671	264	106907											
XKR9	389668	broad.mit.edu	37	chr8	71593291	71593291	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaaaagctatagtcattcGtaatgaaatatactaaacag	6	6	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71593291	T	T	71593291	1	4	110	0	1	0	0	0	0	0	0	0	17565	1160	40	3		3	XKR9	8	71593291	5'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	975940	71593291	74770731	265	106908											
ZFHX4	79776	broad.mit.edu	37	chr8	77617486	77617486	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaaggaagcgcgagcaCctcgagctcagcagagcagc	12	12	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77617486	G	G	77617486	3	3	110	1	0	0	0	0	1	0	0	0	17761	507	18	4	1165	4	ZFHX4	8	77617486	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	6024195	77617486	68746536	266	106909											
LRRCC1	85444	broad.mit.edu	37	chr8	86039160	86039160	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acattagtttcagtgtggttCaatcaacaacaatgtatgtg	8	6	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86039160	T	T	86039160	1	4	110	0	1	0	0	0	0	0	0	0	9113	841	29	4		4	LRRCC1	8	86039160	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	8421674	86039160	60324862	267	106910											
CA2	760	broad.mit.edu	37	chr8	86386052	86386052	+	Intron	DEL	T	-	-													gctgcagaagtaagatatacTtttttttttctttccaggga							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86386052	-	-	86386052	6	5	110	0	1	1	0	1	0	0	0	0	2542	1624	56	0		0	CA2	8	86386052	Intron	DEL	T	TCGA-44-2662-01A-01D-0969-08	346892	86386052	59977970	268	106911											
DPY19L4	286148	broad.mit.edu	37	chr8	95738658	95738658	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacattccaattcctgaaaGagctccaaaacgtaagttag	7	9	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95738658	A	A	95738658	3	1	110	1	0	0	0	0	1	0	0	0	4783	942	33	4	122	4	DPY19L4	8	95738658	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	9352606	95738658	50625364	269	106912											
ZFPM2	23414	broad.mit.edu	37	chr8	106813279	106813279	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtatgtctctctaggagtGaaaatggaagaattcctgcc	10	7	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106813279	A	A	106813279	2	1	110	1	0	0	0	0	0	0	0	1	17784	1277	45	4		4	ZFPM2	8	106813279	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	11074621	106813279	39550743	270	106913											
PKHD1L1	93035	broad.mit.edu	37	chr8	110476724	110476724	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagtaccagtcttctgaatGatgatgtgaccccggctgca	10	10	2	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110476724	A	A	110476724	3	1	110	1	0	0	0	0	1	0	0	0	12067	1290	45	4	7857	4	PKHD1L1	8	110476724	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	3663445	110476724	35887298	271	106914											
CSMD3	114788	broad.mit.edu	37	chr8	113246694	113246694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattaggcgagcttcctggCttttatatacccctgtaaaa	7	10	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113246694	A	A	113246694	3	1	110	1	0	0	0	0	1	0	0	0	3980	797	28	3	499	3	CSMD3	8	113246694	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	2769970	113246694	33117328	272	106915											
TAF2	6873	broad.mit.edu	37	chr8	120843827	120843827	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaacacaattatctggaaGactacaaactttctaagtac	5	8	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120843827	T	T	120843827	1	4	110	0	1	0	0	0	0	0	0	0	15643	957	33	3		3	TAF2	8	120843827	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	7597133	120843827	25520195	273	106916											
MTBP	27085	broad.mit.edu	37	chr8	121463465	121463465	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atacagaaaaagataaaattGaagatgttcttcaaacgaat	6	4	2	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121463465	C	C	121463465	3	2	110	1	0	0	0	0	1	0	0	0	10006	1291	45	4	342	4	MTBP	8	121463465	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	619638	121463465	24900557	274	106917											
WDR67	93594	broad.mit.edu	37	chr8	124146378	124146378	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatgagagatcgagaaattGctgccacagccagagaccta	10	9	0	4	rs144947635	byFrequency	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124146378	A	A	124146378	3	1	110	1	0	0	0	0	1	0	0	0	17445	1319	46	4	2497	4	WDR67	8	124146378	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2682913	124146378	22217644	275	106918											
GSDMC	56169	broad.mit.edu	37	chr8	130789733	130789733	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtaatataacaaactgaCgtaatttggtggcactcaat	7	7	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130789733	T	T	130789733	3	4	110	1	0	0	0	0	1	0	0	0	6884	536	19	4	1477	4	GSDMC	8	130789733	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	6643355	130789733	15574289	276	106919											
ZFP41	286128	broad.mit.edu	37	chr8	144332687	144332687	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggctccctcgtgtcccGcgtctgatgggggcgcaggg	17	14	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144332687	A	A	144332687	1	1	110	0	1	0	0	0	0	0	0	0	17775	1102	38	4		4	ZFP41	8	144332687	3'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	13542954	144332687	2031335	277	106920											
GSDMD	79792	broad.mit.edu	37	chr8	144642079	144642079	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctgacagctccagcacctCaatgaatgtgtactcgctga	9	12	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144642079	T	T	144642079	3	4	110	1	0	0	0	0	1	0	0	0	6885	838	29	4	356	4	GSDMD	8	144642079	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	309392	144642079	1721943	278	106921											
SCRIB	23513	broad.mit.edu	37	chr8	144874324	144874324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagaacagcgggcagGggtgacttggggcaggagca	19	8	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144874324	T	T	144874324	1	4	110	0	1	0	0	0	0	0	0	0	14050	1247	43	2		2	SCRIB	8	144874324	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	232245	144874324	1489698	279	106922											
OPLAH	26873	broad.mit.edu	37	chr8	145106271	145106271	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atactcatagacgctgccgtGctcgggaaaggccagtgctt	12	11	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145106271	A	A	145106271	3	1	110	1	0	0	0	0	1	0	0	0	10970	1319	46	4	47	4	OPLAH	8	145106271	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	231947	145106271	1257751	280	106923											
KIFC2	90990	broad.mit.edu	37	chr8	145697661	145697661	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtgggctactccaccaggGaggccttctccccacccctg	11	17	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145697661	A	A	145697661	1	1	110	0	1	0	0	0	0	0	0	0	8383	1189	41	4		4	KIFC2	8	145697661	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	591390	145697661	666361	281	106924											
CNTLN	54875	broad.mit.edu	37	chr9	17298312	17298312	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaagtactgagaaatcagGaagatgttcacacagctgaa	9	6	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17298312	T	T	17298312	4	4	110	1	0	0	0	0	0	1	0	0	3671	1175	41	3	1134	3	CNTLN	9	17298312	Nonsense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08		17298312	123915119	282	106925											
DNAJA1	3301	broad.mit.edu	37	chr9	33026680	33026680	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtatagtatttctattaTggcctgaaatcgagtatcta	8	6	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33026680	C	C	33026680	1	2	110	0	1	0	0	0	0	0	0	0	4651	1479	51	5		5	DNAJA1	9	33026680	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	15728368	33026680	108186751	283	106926											
UBAP2	55833	broad.mit.edu	37	chr9	33963754	33963754	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataagaacttttgtttgacaGatcctgagctatgttgtgag	10	5	0	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33963754	C	C	33963754	3	2	110	1	0	0	0	0	1	0	0	0	16963	933	33	4	2728	4	UBAP2	9	33963754	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	937074	33963754	107249677	284	106927											
AGTPBP1	23287	broad.mit.edu	37	chr9	88200260	88200260	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttttaaaatgaaaaatctGaaacaaaaatggcaaaatgt	5	4	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88200260	T	T	88200260	1	4	110	0	1	0	0	0	0	0	0	0	400	1305	45	3		3	AGTPBP1	9	88200260	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	54236506	88200260	53013171	285	106928											
ROD1	9991	broad.mit.edu	37	chr9	115024748	115024748	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccagggtaacagggtaaaaGaggttttcaataattattcg	10	5	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115024748	C	C	115024748	2	2	110	1	0	0	0	0	0	0	0	1	13630	929	33	4		4	ROD1	9	115024748	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	26824488	115024748	26188683	286	106929											
STXBP1	6812	broad.mit.edu	37	chr9	130444613	130444613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taataagtaaacaaaccactGgggtatgaagcactagatgc	9	7	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130444613	T	T	130444613	1	4	110	0	1	0	0	0	0	0	0	0	15470	1363	47	2		2	STXBP1	9	130444613	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	15419865	130444613	10768818	287	106930											
NUP188	23511	broad.mit.edu	37	chr9	131719195	131719195	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcatcctgtgtgcgatttCtgagctgttccttacttaaa	8	10	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131719195	G	G	131719195	1	3	110	0	1	0	0	0	0	0	0	0	10853	928	32	4		4	NUP188	9	131719195	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1274582	131719195	9494236	288	106931											
TMEM8C	389827	broad.mit.edu	37	chr9	136380685	136380685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatctgctgggtgtagacGctcttgtctgggtacaggcc	13	11	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136380685	T	T	136380685	3	4	110	1	0	0	0	0	1	0	0	0	16339	1078	38	3	229	3	TMEM8C	9	136380685	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	4661490	136380685	4832746	289	106932											
OBP2A	29991	broad.mit.edu	37	chr9	138438913	138438913	+	Intron	DEL	G	-	-													atcctgaagctcggtggggtGggggggcagtggaattttca							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138438913	-	-	138438913	6	5	110	0	1	1	0	1	0	0	0	0	10905	1363	47	0		0	OBP2A	9	138438913	Intron	DEL	G	TCGA-44-2662-01A-01D-0969-08	2058228	138438913	2774518	290	106933											
PNPLA7	375775	broad.mit.edu	37	chr9	140441330	140441330	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcactttgtctctcttccgGaaccggtactgaggagtggg	12	10	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140441330	A	A	140441330	2	1	110	1	0	0	0	0	0	0	0	1	12265	1165	41	4		4	PNPLA7	9	140441330	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	2002417	140441330	772101	291	106934											
CACNA1B	774	broad.mit.edu	37	chr9	140870387	140870387	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtttgttttcctgggtctCttcctcacagagatgtccct	9	11	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140870387	G	G	140870387	2	3	110	1	0	0	0	0	0	0	0	1	2565	900	32	4		4	CACNA1B	9	140870387	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	429057	140870387	343044	292	106935											
CACNA1B	774	broad.mit.edu	37	chr9	140919511	140919511	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaacagccagaggatgCagacaatcagcggaacgtca	14	9	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140919511	T	T	140919511	3	4	110	1	0	0	0	0	1	0	0	0	2565	710	25	4	3251	4	CACNA1B	9	140919511	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	49124	140919511	293920	293	106936											
IL15RA	3601	broad.mit.edu	37	chr10	5995219	5995219	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagaggagggggttgccctCaaatcaacagacgcttccca	11	11	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5995219	G	G	5995219	1	3	110	0	1	0	0	0	0	0	0	0	7702	841	29	4		4	IL15RA	10	5995219	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08		5995219	129539528	294	106937											
KIN	22944	broad.mit.edu	37	chr10	7820880	7820880	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcatcatcaaggtcctgcTttttctttttctccagttcc	4	13	5	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7820880	A	A	7820880	3	1	110	1	0	0	0	0	1	0	0	0	8386	1609	56	5	738	5	KIN	10	7820880	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	1825661	7820880	127713867	295	106938											
SLC39A12	221074	broad.mit.edu	37	chr10	18292133	18292133	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcttaagctctggactttCtatgaagactgccatcctga	8	11	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18292133	G	G	18292133	3	3	110	1	0	0	0	0	1	0	0	0	14729	913	32	4	1835	4	SLC39A12	10	18292133	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	10471253	18292133	117242614	296	106939											
DNAJC1	64215	broad.mit.edu	37	chr10	22048380	22048380	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcctccgaggccgggcatCagtggccccggtctcctgct	13	18	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22048380	T	T	22048380	3	4	110	1	0	0	0	0	1	0	0	0	4668	826	29	4	357	4	DNAJC1	10	22048380	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	3756247	22048380	113486367	297	106940											
UNC5B	219699	broad.mit.edu	37	chr10	73053578	73053578	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttcacgggcgagtcctattCccgctcagcagtcaagcggc	12	14	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73053578	G	G	73053578	3	3	110	1	0	0	0	0	1	0	0	0	17118	855	30	4	2113	4	UNC5B	10	73053578	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	51005198	73053578	62481169	298	106941											
NRG3	10718	broad.mit.edu	37	chr10	83635863	83635863	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctgcctcctcttcttcctCttcttcctcctccgctacca	3	20	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83635863	T	T	83635863	3	4	110	1	0	0	0	0	1	0	0	0	10744	913	32	4	769	4	NRG3	10	83635863	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	10582285	83635863	51898884	299	106942											
KIF20B	9585	broad.mit.edu	37	chr10	91514509	91514509	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgctggaattaacagtttCtacatggttttctgtttttg	8	5	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91514509	G	G	91514509	1	3	110	0	1	0	0	0	0	0	0	0	8357	928	32	4		4	KIF20B	10	91514509	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	7878646	91514509	44020238	300	106943											
DPCD	25911	broad.mit.edu	37	chr10	103360902	103360902	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccggggtagcgctctgatGagggtggagccttcccttcc	14	14	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103360902	A	A	103360902	1	1	110	0	1	0	0	0	0	0	0	0	4751	1305	45	4		4	DPCD	10	103360902	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	11846393	103360902	32173845	301	106944											
ADD3	120	broad.mit.edu	37	chr10	111878416	111878416	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaattgaccatacaggattCagtccccatgctgcaatcta	6	11	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111878416	T	T	111878416	2	4	110	1	0	0	0	0	0	0	0	1	306	825	29	4		4	ADD3	10	111878416	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	8517514	111878416	23656331	302	106945											
TDRD1	56165	broad.mit.edu	37	chr10	115981282	115981282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgctcatcttttaaactGtaaaacgaaagtgctggtct	7	7	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115981282	T	T	115981282	1	4	110	0	1	0	0	0	0	0	0	0	15852	1392	48	3		3	TDRD1	10	115981282	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	4102866	115981282	19553465	303	106946											
TACC2	10579	broad.mit.edu	37	chr10	123970013	123970013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actccttctctgccgtcttcGatgaagacaagccgatagcc	8	14	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123970013	C	C	123970013	3	2	110	1	0	0	0	0	1	0	0	0	15621	1058	37	4	6175	4	TACC2	10	123970013	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	7988731	123970013	11564734	304	106947											
TACC2	10579	broad.mit.edu	37	chr10	123973013	123973013	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgatgtgtttctgtggtgGgcctgcgaatgatggggcat	16	6	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123973013	A	A	123973013	1	1	110	0	1	0	0	0	0	0	0	0	15621	1247	43	4		4	TACC2	10	123973013	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3000	123973013	11561734	305	106948											
KNDC1	85442	broad.mit.edu	37	chr10	135032354	135032354	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgcaggtgaacttgctgtCcaaatttttgctgattgcaa	10	8	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135032354	G	G	135032354	3	3	110	1	0	0	0	0	1	0	0	0	8497	855	30	4	4803	4	KNDC1	10	135032354	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	11059341	135032354	502393	306	106949											
SIGIRR	59307	broad.mit.edu	37	chr11	407754	407754	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacgcctccaaagccgagctCagcagcgcactctcagggag	11	16	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	407754	G	G	407754	1	3	110	0	1	0	0	0	0	0	0	0	14417	841	29	4		4	SIGIRR	11	407754	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08		407754	134598762	307	106950											
LRDD	55367	broad.mit.edu	37	chr11	800571	800571	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtcgatgccgcgctcgaaGgccgcaaagaactcttcgcc	11	15	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	800571	A	A	800571	2	1	110	1	0	0	0	0	0	0	0	1	9023	987	35	4		4	LRDD	11	800571	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	392817	800571	134205945	308	106951											
TMEM41B	440026	broad.mit.edu	37	chr11	9332797	9332797	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggagagcagaactggtgaGacttgagggaaggacccagg	17	6	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9332797	C	C	9332797	1	2	110	0	1	0	0	0	0	0	0	0	16288	957	33	4		4	TMEM41B	11	9332797	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	8532226	9332797	125673719	309	106952											
IGSF22	283284	broad.mit.edu	37	chr11	18735942	18735942	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgcaccctgcttcacaatCtgcatgcctggcaagtccgt	8	15	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18735942	T	T	18735942	2	4	110	1	0	0	0	0	0	0	0	1	7670	912	32	4		4	IGSF22	11	18735942	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	9403145	18735942	116270574	310	106953											
LGR4	55366	broad.mit.edu	37	chr11	27389919	27389919	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaaaatatcagagtaacaGacttcattatttcggggctg	9	6	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27389919	A	A	27389919	3	1	110	1	0	0	0	0	1	0	0	0	8828	942	33	4	508	4	LGR4	11	27389919	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	8653977	27389919	107616597	311	106954											
CD59	966	broad.mit.edu	37	chr11	33743968	33743968	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acgagcagcagcccgaacagGacagaccctccttggattcc	10	15	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33743968	C	C	33743968	2	2	110	1	0	0	0	0	0	0	0	1	3056	1161	41	4		4	CD59	11	33743968	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	6354049	33743968	101262548	312	106955											
APIP	51074	broad.mit.edu	37	chr11	34904742	34904742	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctcatccaatcaatacttCttcatgaatggatacataat	4	9	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34904742	G	G	34904742	1	3	110	0	1	0	0	0	0	0	0	0	776	928	32	4		4	APIP	11	34904742	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1160774	34904742	100101774	313	106956											
APIP	51074	broad.mit.edu	37	chr11	34904833	34904833	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacatactttgttttccttCacatttagcgggtggtaact	8	8	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34904833	T	T	34904833	1	4	110	0	1	0	0	0	0	0	0	0	776	841	29	4		4	APIP	11	34904833	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	91	34904833	100101683	314	106957											
LRRC4C	57689	broad.mit.edu	37	chr11	40137225	40137225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatttcccgaaggttgcaCatggcaaggttcaaatacct	11	9	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40137225	A	A	40137225	3	1	110	1	0	0	0	0	1	0	0	0	9095	478	17	3	1308	3	LRRC4C	11	40137225	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	5232392	40137225	94869291	315	106958											
AHNAK	79026	broad.mit.edu	37	chr11	62301532	62301544	+	Frame_Shift_Del	DEL	CTCATCATCCCCG	-	-													gtgtagatgcgctggtactcCtcatcatccccgctctgcag					rs117532364	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62301544	-	-	62301532	7	5	110	1	0	1	0	1	0	0	0	0	414	680	24	0	17435	0	AHNAK	11	62301532	Frame_Shift_Del	DEL	CTCATCATCCCCG	TCGA-44-2662-01A-01D-0969-08	22164307	62301532	72704984	316	106959											
SLC22A8	9376	broad.mit.edu	37	chr11	62761244	62761244	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaggtccagcacctacctGatgactgtggggtataattc	10	12	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62761244	C	C	62761244	3	2	110	1	0	0	0	0	1	0	0	0	14574	1280	45	4	317	4	SLC22A8	11	62761244	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	459712	62761244	72245272	317	106960											
PLCB3	5331	broad.mit.edu	37	chr11	64029861	64029861	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccctgcccctgctcgacGtgcccgtggcaccccagatg	11	18	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64029861	A	A	64029861	1	1	110	0	1	0	0	0	0	0	0	0	12124	1160	40	4		4	PLCB3	11	64029861	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1268617	64029861	70976655	318	106961											
FRMD8	83786	broad.mit.edu	37	chr11	65154527	65154527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggacgggacagaaggcaGtgccgggcagcccggccccg	18	13	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65154527	T	T	65154527	3	4	110	1	0	0	0	0	1	0	0	0	6116	1029	36	3	22	3	FRMD8	11	65154527	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	1124666	65154527	69851989	319	106962											
CCDC87	55231	broad.mit.edu	37	chr11	66358453	66358453	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagatgcttctgcaggctCagaattttgtggggttctcc	11	10	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66358453	T	T	66358453	2	4	110	1	0	0	0	0	0	0	0	1	2890	813	29	4		4	CCDC87	11	66358453	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	1203926	66358453	68648063	320	106963											
SAPS3	55291	broad.mit.edu	37	chr11	68377414	68377414	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaagatgctgcttgtaaAgacgcagaggagtgtcccga	12	9	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68377414	C	C	68377414	3	2	110	1	0	0	0	0	1	0	0	0	13950	69	3	5	2597	5	SAPS3	11	68377414	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	2018961	68377414	66629102	321	106964											
UVRAG	7405	broad.mit.edu	37	chr11	75852254	75852254	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgtactgtggagcaagcaGaagaaatcatcgggctggaa	14	7	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75852254	A	A	75852254	3	1	110	1	0	0	0	0	1	0	0	0	17235	943	33	4	1955	4	UVRAG	11	75852254	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	7474840	75852254	59154262	322	106965											
PRKRIR	5612	broad.mit.edu	37	chr11	76062972	76062972	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctttactgttctgaaaaaGaacagaaattacgttgtcaa	6	6	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76062972	A	A	76062972	3	1	110	1	0	0	0	0	1	0	0	0	12632	942	33	4	1067	4	PRKRIR	11	76062972	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	210718	76062972	58943544	323	106966											
C11orf30	56946	broad.mit.edu	37	chr11	76224358	76224358	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaatgtgtgtgactactgcCctcttgggttggtataaggg	13	6	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76224358	T	T	76224358	1	4	110	0	1	0	0	0	0	0	0	0	1648	638	22	4		4	C11orf30	11	76224358	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	161386	76224358	58782158	324	106967											
ODZ4	26011	broad.mit.edu	37	chr11	78383451	78383451	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgatgggccacgttgctctCagctctgctgggaagctctt	12	12	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78383451	G	G	78383451	1	3	110	0	1	0	0	0	0	0	0	0	10932	841	29	4		4	ODZ4	11	78383451	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	2159093	78383451	56623065	325	106968											
CCDC90B	60492	broad.mit.edu	37	chr11	82985720	82985720	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttgcaaattcacttttctCtaggatgaccatgtctttcc	5	10	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82985720	G	G	82985720	3	3	110	1	0	0	0	0	1	0	0	0	2897	922	32	4	400	4	CCDC90B	11	82985720	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	4602269	82985720	52020796	326	106969											
C11orf70	85016	broad.mit.edu	37	chr11	101953881	101953881	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattgtggatcctatcaggcGtcaccttcatgttttatacc	7	10	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101953881	A	A	101953881	3	1	110	1	0	0	0	0	1	0	0	0	1671	1145	40	4	663	4	C11orf70	11	101953881	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	18968161	101953881	33052635	327	106970											
GUCY1A2	2977	broad.mit.edu	37	chr11	106810208	106810208	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctttattttcagagccaGaagcctcaggcttggttcta	9	9	4	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106810208	A	A	106810208	3	1	110	1	0	0	0	0	1	0	0	0	6958	942	33	4	1034	4	GUCY1A2	11	106810208	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	4856327	106810208	28196308	328	106971											
C11orf88	399949	broad.mit.edu	37	chr11	111385769	111385769	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggcctcctgtcagtcatatCtgcctcaccgtaactggcct	8	16	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111385769	T	T	111385769	1	4	110	0	1	0	0	0	0	0	0	0	1682	928	32	4		4	C11orf88	11	111385769	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	4575561	111385769	23620747	329	106972											
FAM55A	120400	broad.mit.edu	37	chr11	114401679	114401679	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattaacctgtctaatcAtttttacttattatgagttt	4	5	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114401679	G	G	114401679	1	3	110	0	1	0	0	0	0	0	0	0	5635	232	8	5		5	FAM55A	11	114401679	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	3015910	114401679	20604837	330	106973											
IFFO1	25900	broad.mit.edu	37	chr12	6658507	6658507	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagagagaaaaagggggaaGagcaaggaaaagggaaaggg	18	1	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6658507	A	A	6658507	1	1	110	0	1	0	0	0	0	0	0	0	7580	957	33	4		4	IFFO1	12	6658507	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08		6658507	127193388	331	106974											
ATN1	1822	broad.mit.edu	37	chr12	7045360	7045360	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccacctgccctgagacccctCaacaatgcatcagcctctcc	5	20	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7045360	G	G	7045360	2	3	110	1	0	0	0	0	0	0	0	1	1115	813	29	4		4	ATN1	12	7045360	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	386853	7045360	126806535	332	106975											
FAM90A1	55138	broad.mit.edu	37	chr12	8376828	8376828	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagctgtgggtggaaaggaAgtgatgtcagtgagtgagct	18	3	1	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8376828	T	T	8376828	1	4	110	0	1	0	0	0	0	0	0	0	5703	87	3	5		5	FAM90A1	12	8376828	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	1331468	8376828	125475067	333	106976											
ABCC9	10060	broad.mit.edu	37	chr12	21964926	21964926	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgactctgagtaaaacctttCtatgagtcaaaggctaaatc	7	8	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21964926	G	G	21964926	1	3	110	0	1	0	0	0	0	0	0	0	59	928	32	4		4	ABCC9	12	21964926	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	13588098	21964926	111886969	334	106977											
ETNK1	55500	broad.mit.edu	37	chr12	22778145	22778145	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccgacaacaggaattttctCcgagagcgggccgggctcag	13	12	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22778145	G	G	22778145	2	3	110	1	0	0	0	0	0	0	0	1	5315	842	30	4		4	ETNK1	12	22778145	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	813219	22778145	111073750	335	106978											
SENP1	29843	broad.mit.edu	37	chr12	48479042	48479042	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacactggcatcatcctcatCaaccagtacatcgcagagat	7	13	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48479042	G	G	48479042	1	3	110	0	1	0	0	0	0	0	0	0	14159	841	29	4		4	SENP1	12	48479042	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	25700897	48479042	85372853	336	106979											
ADCY6	112	broad.mit.edu	37	chr12	49168127	49168127	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctccgctgtactcccagTgtccaggacagtgcttggca	10	13	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49168127	A	A	49168127	1	1	110	0	1	0	0	0	0	0	0	0	298	1711	59	5		5	ADCY6	12	49168127	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	689085	49168127	84683768	337	106980											
TFCP2	7024	broad.mit.edu	37	chr12	51504577	51504577	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctgtaaagatttcaaagTtaacatgttttatcctttaa	4	7	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51504577	C	C	51504577	1	2	110	0	1	0	0	0	0	0	0	0	15918	1740	60	5		5	TFCP2	12	51504577	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	2336450	51504577	82347318	338	106981											
NCKAP1L	3071	broad.mit.edu	37	chr12	54914904	54914904	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtccctctttcccatagtAcccccacctcaagaaccatg	5	17	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54914904	G	G	54914904	3	3	110	1	0	0	0	0	1	0	0	0	10317	405	14	5	1830	5	NCKAP1L	12	54914904	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	3410327	54914904	78936991	339	106982											
DNAJC14	85406	broad.mit.edu	37	chr12	56217256	56217256	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcgcaaaaccttgaaggcctCctcagcccggggatgatgat	11	12	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56217256	G	G	56217256	3	3	110	1	0	0	0	0	1	0	0	0	4673	864	30	4	684	4	DNAJC14	12	56217256	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1302352	56217256	77634639	340	106983											
DNAJC14	85406	broad.mit.edu	37	chr12	56217358	56217358	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcaccttgaatttattctCatatcaaagggttctctttc	4	11	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56217358	G	G	56217358	1	3	110	0	1	0	0	0	0	0	0	0	4673	841	29	4		4	DNAJC14	12	56217358	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	102	56217358	77634537	341	106984											
STAT2	6773	broad.mit.edu	37	chr12	56744927	56744927	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagtcttgaggatgaggggtCgatggggagtttggggcatg	20	4	1	2	rs149666262		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56744927	T	T	56744927	3	4	110	1	0	0	0	0	1	0	0	0	15383	884	31	4	1626	4	STAT2	12	56744927	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	527569	56744927	77106968	342	106985											
LRP1	4035	broad.mit.edu	37	chr12	57567684	57567684	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccttgtgccaacaacacCtcagtctgcctgccccctga	6	19	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57567684	T	T	57567684	2	4	110	1	0	0	0	0	0	0	0	1	9038	668	24	4		4	LRP1	12	57567684	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	822757	57567684	76284211	343	106986											
NXPH4	11247	broad.mit.edu	37	chr12	57618593	57618593	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgtggaaagggactggcgtCgatagggctctggcaggatg	18	7	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57618593	G	G	57618593	1	3	110	0	1	0	0	0	0	0	0	0	10888	899	31	4		4	NXPH4	12	57618593	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	50909	57618593	76233302	344	106987											
R3HDM2	22864	broad.mit.edu	37	chr12	57674056	57674057	+	Intron	INS	-	C	C													aaaactgatccttcctgccaINScccacagcacaagagacatg							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57674057	C	C	57674056	6	5	110	0	1	1	1	0	0	0	0	0	12996	174	6	0		0	R3HDM2	12	57674056	Intron	INS	-	TCGA-44-2662-01A-01D-0969-08	55463	57674056	76177839	345	106988											
CTDSP2	10106	broad.mit.edu	37	chr12	58223088	58223088	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaatacactacttatGgaaggatggaggaagggccc	13	6	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58223088	A	A	58223088	1	1	110	0	1	0	0	0	0	0	0	0	4038	1363	47	4		4	CTDSP2	12	58223088	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	549032	58223088	75628807	346	106989											
C12orf56	115749	broad.mit.edu	37	chr12	64678484	64678484	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggcgtgatgactcggtttCtgtttctctgaacatcaata	9	9	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64678484	G	G	64678484	3	3	110	1	0	0	0	0	1	0	0	0	1713	922	32	4	622	4	C12orf56	12	64678484	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	6455396	64678484	69173411	347	106990											
RAB3IP	117177	broad.mit.edu	37	chr12	70133583	70133583	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttactggctccagaagtgatGatgctgggtggaagtcgcag	15	7	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70133583	A	A	70133583	1	1	110	0	1	0	0	0	0	0	0	0	13046	1305	45	4		4	RAB3IP	12	70133583	5'UTR	SNP	G	TCGA-44-2662-01A-01D-0969-08	5455099	70133583	63718312	348	106991											
TRHDE	29953	broad.mit.edu	37	chr12	72893294	72893294	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggaaaagcagaggtttcTgaccgatgttctgcatgaag	13	7	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72893294	C	C	72893294	3	2	110	1	0	0	0	0	1	0	0	0	16603	1580	55	5	1488	5	TRHDE	12	72893294	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	2759711	72893294	60958601	349	106992											
GLIPR1L1	256710	broad.mit.edu	37	chr12	75763966	75763966	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcttttaatgtcatttaTatacaaaagaaattctcaaa	3	5	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75763966	C	C	75763966	1	2	110	0	1	0	0	0	0	0	0	0	6506	1421	49	5		5	GLIPR1L1	12	75763966	3'UTR	SNP	T	TCGA-44-2662-01A-01D-0969-08	2870672	75763966	58087929	350	106993											
NAV3	89795	broad.mit.edu	37	chr12	78583831	78583831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaaccaattacccaaagGtactttaacttgttgatgga	6	9	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78583831	T	T	78583831	3	4	110	1	0	0	0	0	1	0	0	0	10279	1252	44	3	6187	3	NAV3	12	78583831	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2819865	78583831	55268064	351	106994											
ATP2A2	488	broad.mit.edu	37	chr12	110781292	110781292	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacaaaatgtttgtgagctGaaattttgtaaattcatccc	6	6	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110781292	A	A	110781292	1	1	110	0	1	0	0	0	0	0	0	0	1141	1305	45	4		4	ATP2A2	12	110781292	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	32197461	110781292	23070603	352	106995											
TBX5	6910	broad.mit.edu	37	chr12	114837286	114837286	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaggttccacttttctctCtccccgctccacctgccacc	5	19	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114837286	T	T	114837286	1	4	110	0	1	0	0	0	0	0	0	0	15783	928	32	4		4	TBX5	12	114837286	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	4055994	114837286	19014609	353	106996											
CCDC60	160777	broad.mit.edu	37	chr12	119916949	119916949	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagctagagtcacacgtcGcccattcactcccatccaca	8	16	2	1	rs144234053		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119916949	A	A	119916949	3	1	110	1	0	0	0	0	1	0	0	0	2859	1087	38	4	406	4	CCDC60	12	119916949	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	5079663	119916949	13934946	354	106997											
RSRC2	65117	broad.mit.edu	37	chr12	123003363	123003363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacttgttagaaggtactaCattataatacaacatgactt	5	6	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123003363	T	T	123003363	1	4	110	0	1	0	0	0	0	0	0	0	13826	493	17	4		4	RSRC2	12	123003363	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	3086414	123003363	10848532	355	106998											
DNAH10	196385	broad.mit.edu	37	chr12	124323233	124323233	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcgtccaggagcacatgatCaaggtcagccctctgggtgt	13	11	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124323233	G	G	124323233	3	3	110	1	0	0	0	0	1	0	0	0	4638	816	29	4	4889	4	DNAH10	12	124323233	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1319870	124323233	9528662	356	106999											
DHX37	57647	broad.mit.edu	37	chr12	125470823	125470823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccttgtctgagagagcaCagttattaagtccccattct	8	10	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125470823	A	A	125470823	1	1	110	0	1	0	0	0	0	0	0	0	4550	493	17	3		3	DHX37	12	125470823	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1147590	125470823	8381072	357	107000											
SPATA13	221178	broad.mit.edu	37	chr13	24825710	24825710	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgagttgccactgggcttCggtgcagcctgcaactcgtg	13	12	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24825710	T	T	24825710	1	4	110	0	1	0	0	0	0	0	0	0	15116	899	31	4		4	SPATA13	13	24825710	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08		24825710	90344168	358	107001											
PARP4	143	broad.mit.edu	37	chr13	25064710	25064710	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgctactgtggcttgttgctGaagattatctaggtaattac	10	7	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25064710	A	A	25064710	1	1	110	0	1	0	0	0	0	0	0	0	11557	1305	45	4		4	PARP4	13	25064710	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	239000	25064710	90105168	359	107002											
FAM123A	219287	broad.mit.edu	37	chr13	25743889	25743889	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggttgctggtgcaccacGggatggctagatggaaggtt	18	6	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25743889	T	T	25743889	2	4	110	1	0	0	0	0	0	0	0	1	5468	1103	39	1		1	FAM123A	13	25743889	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	679179	25743889	89425989	360	107003											
COG3	83548	broad.mit.edu	37	chr13	46056606	46056606	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtataacatatatctcatctCatgtaagtcagagtattttt	5	6	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46056606	T	T	46056606	3	4	110	1	0	0	0	0	1	0	0	0	3691	826	29	4	737	4	COG3	13	46056606	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	20312717	46056606	69113272	361	107004											
OLFM4	10562	broad.mit.edu	37	chr13	53624648	53624648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacttggtataccaagcaGtataaaccatctgcttctaa	5	10	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53624648	T	T	53624648	3	4	110	1	0	0	0	0	1	0	0	0	10950	1020	36	3	1293	3	OLFM4	13	53624648	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	7568042	53624648	61545230	362	107005											
MYCBP2	23077	broad.mit.edu	37	chr13	77759506	77759506	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttcttctacaactgcttttCctgtagctttgagggggaaa	9	8	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77759506	G	G	77759506	3	3	110	1	0	0	0	0	1	0	0	0	10112	855	30	4	9793	4	MYCBP2	13	77759506	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	24134858	77759506	37410372	363	107006											
MYCBP2	23077	broad.mit.edu	37	chr13	77760049	77760049	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatagacacgcaataacctCagacaacaggtacccacaaa	6	12	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77760049	G	G	77760049	2	3	110	1	0	0	0	0	0	0	0	1	10112	813	29	4		4	MYCBP2	13	77760049	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	543	77760049	37409829	364	107007											
GPR183	1880	broad.mit.edu	37	chr13	99947431	99947431	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatacactgacttgccgtttCagcatcctcataacctttct	5	13	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99947431	G	G	99947431	2	3	110	1	0	0	0	0	0	0	0	1	6743	813	29	4		4	GPR183	13	99947431	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	22187382	99947431	15222447	365	107008											
COL4A2	1284	broad.mit.edu	37	chr13	111077486	111077486	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggactatacgtgcgtattctCcccgcggaattcagtcagac	10	12	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111077486	T	T	111077486	1	4	110	0	1	0	0	0	0	0	0	0	3722	870	30	4		4	COL4A2	13	111077486	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	11130055	111077486	4092392	366	107009											
ZNF828	283489	broad.mit.edu	37	chr13	115090800	115090800	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcagaaacctgtcttccctGagacccgaaaaccaggtcct	7	15	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115090800	A	A	115090800	3	1	110	1	0	0	0	0	1	0	0	0	18310	1291	45	4	1485	4	ZNF828	13	115090800	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	4013314	115090800	79078	367	107010											
DHRS2	10202	broad.mit.edu	37	chr14	24112544	24112544	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaggtctgggatctccAcatccctcatcttcttgtcc	8	13	5	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24112544	G	G	24112544	1	3	110	0	1	0	0	0	0	0	0	0	4530	174	6	5		5	DHRS2	14	24112544	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08		24112544	83236996	368	107011											
ZFYVE26	23503	broad.mit.edu	37	chr14	68222054	68222054	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattctcatctgatttctgcCtatgagaccttgtttccagc	6	11	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68222054	T	T	68222054	1	4	110	0	1	0	0	0	0	0	0	0	17794	696	24	4		4	ZFYVE26	14	68222054	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	44109510	68222054	39127486	369	107012											
NUMB	8650	broad.mit.edu	37	chr14	73749182	73749182	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctgtgagcacagggagctGatgctctctgcctccccttc	10	14	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73749182	C	C	73749182	3	2	110	1	0	0	0	0	1	0	0	0	10846	1280	45	4	986	4	NUMB	14	73749182	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	5527128	73749182	33600358	370	107013											
C14orf174	161394	broad.mit.edu	37	chr14	77845256	77845256	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctcatactcagatccctcaGagtctcagacagaattaagt	7	11	4	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77845256	C	C	77845256	3	2	110	1	0	0	0	0	1	0	0	0	1772	943	33	4	1497	4	C14orf174	14	77845256	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	4096074	77845256	29504284	371	107014											
TTC8	123016	broad.mit.edu	37	chr14	89338775	89338775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctggctgtgctggagatGcggaagggccacgttgaaca	15	9	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89338775	A	A	89338775	3	1	110	1	0	0	0	0	1	0	0	0	16840	1319	46	4	1376	4	TTC8	14	89338775	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	11493519	89338775	18010765	372	107015											
TTC8	123016	broad.mit.edu	37	chr14	89338841	89338841	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggcagtctgctttcttcaGagaaaagctgtcatgtgtgg	13	7	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89338841	C	C	89338841	1	2	110	0	1	0	0	0	0	0	0	0	16840	957	33	4		4	TTC8	14	89338841	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	66	89338841	18010699	373	107016											
DICER1	23405	broad.mit.edu	37	chr14	95598046	95598046	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggctctctggactactaatGattaacagtctacagaaatc	7	9	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95598046	C	C	95598046	1	2	110	0	1	0	0	0	0	0	0	0	4561	1305	45	4		4	DICER1	14	95598046	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	6259205	95598046	11751494	374	107017											
AMN	81693	broad.mit.edu	37	chr14	103390271	103390271	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggcagcttcttcctgcaGatggtgtcagtcctggtgca	13	10	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103390271	A	A	103390271	5	1	110	1	0	0	0	0	0	0	1	0	580	956	33	4	172	4	AMN	14	103390271	Splice_Site	SNP	G	TCGA-44-2662-01A-01D-0969-08	7792225	103390271	3959269	375	107018											
INF2	64423	broad.mit.edu	37	chr14	105242216	105242216	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcacccacccgccagcctCacaagcgtggttccacagct	7	18	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105242216	T	T	105242216	1	4	110	0	1	0	0	0	0	0	0	0	7804	841	29	4		4	INF2	14	105242216	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1851945	105242216	2107324	376	107019											
HERC2	8924	broad.mit.edu	37	chr15	28369410	28369410	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaatggccttcagcccctCaggcaccaaaggcacacggg	11	14	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28369410	T	T	28369410	1	4	110	0	1	0	0	0	0	0	0	0	7125	841	29	4		4	HERC2	15	28369410	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08		28369410	74161982	377	107020											
RYR3	6263	broad.mit.edu	37	chr15	34040856	34040856	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactaaaattcaaaactgaaGacggtcaccttgtgcagagg	9	9	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34040856	C	C	34040856	1	2	110	0	1	0	0	0	0	0	0	0	13881	957	33	4		4	RYR3	15	34040856	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	5671446	34040856	68490536	378	107021											
RYR3	6263	broad.mit.edu	37	chr15	34145245	34145245	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttttcgttttgtttttcaGatcttttcctaataactact	3	8	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34145245	T	T	34145245	5	4	110	1	0	0	0	0	0	0	1	0	13881	956	33	3	14006	3	RYR3	15	34145245	Splice_Site	SNP	G	TCGA-44-2662-01A-01D-0969-08	104389	34145245	68386147	379	107022											
TYRO3	7301	broad.mit.edu	37	chr15	41865997	41865997	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accgcctgaaacagcctccgGagtgtatggaggacgtgtga	14	10	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41865997	C	C	41865997	3	2	110	1	0	0	0	0	1	0	0	0	16940	1175	41	4	2336	4	TYRO3	15	41865997	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	7720752	41865997	60665395	380	107023											
GABPB1	2553	broad.mit.edu	37	chr15	50593174	50593174	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttctgatattctatttatCttactgactcttaaacaaag	3	7	4	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50593174	A	A	50593174	1	1	110	0	1	0	0	0	0	0	0	0	6218	928	32	3		3	GABPB1	15	50593174	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	8727177	50593174	51938218	381	107024											
TRPM7	54822	broad.mit.edu	37	chr15	50891429	50891429	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggataaagtattgcctttCtgggaacaccaaaactaagt	9	7	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50891429	A	A	50891429	3	1	110	1	0	0	0	0	1	0	0	0	16716	913	32	3	2616	3	TRPM7	15	50891429	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	298255	50891429	51639963	382	107025											
VPS13C	54832	broad.mit.edu	37	chr15	62304383	62304383	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctaaacaaaaaatttgaatGagaatgaaaaagaaaatgca	6	4	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62304383	A	A	62304383	1	1	110	0	1	0	0	0	0	0	0	0	17318	1305	45	4		4	VPS13C	15	62304383	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	11412954	62304383	40227009	383	107026											
SCAMP5	192683	broad.mit.edu	37	chr15	75305187	75305187	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgggccagggtggctggagGaggcaggaagactgggcgtg	23	6	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75305187	A	A	75305187	1	1	110	0	1	0	0	0	0	0	0	0	13986	1189	41	4		4	SCAMP5	15	75305187	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	13000804	75305187	27226205	384	107027											
TTC23	64927	broad.mit.edu	37	chr15	99696503	99696503	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaggatcgaggttgctctCtgtgaaaggaacaaaaagct	11	8	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99696503	T	T	99696503	5	4	110	1	0	0	0	0	0	0	1	0	16816	927	32	4	362	4	TTC23	15	99696503	Splice_Site	SNP	C	TCGA-44-2662-01A-01D-0969-08	24391316	99696503	2834889	385	107028											
RAB40C	57799	broad.mit.edu	37	chr16	677517	677522	+	In_Frame_Del	DEL	CGGGGG	-	-													tactccctggccagcggggcCgggggcggcggcagcaaggg							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	677522	-	-	677517	7	5	110	1	0	1	0	1	0	0	0	0	13050	639	23	0	763	0	RAB40C	16	677517	In_Frame_Del	DEL	CGGGGG	TCGA-44-2662-01A-01D-0969-08		677517	89677236	386	107029											
WDR90	197335	broad.mit.edu	37	chr16	709170	709170	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgcaggtgctgcgctgactCtggggcccgtcctgtgtctg	16	12	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	709170	T	T	709170	1	4	110	0	1	0	0	0	0	0	0	0	17464	928	32	4		4	WDR90	16	709170	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	31653	709170	89645583	387	107030											
CCNF	899	broad.mit.edu	37	chr16	2480922	2480922	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgttgaatatttgaaaatGaatgatctcttctgtaattt	6	3	2	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2480922	A	A	2480922	1	1	110	0	1	0	0	0	0	0	0	0	2952	1305	45	4		4	CCNF	16	2480922	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1771752	2480922	87873831	388	107031											
ZNF597	146434	broad.mit.edu	37	chr16	3490921	3490921	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacacagccagatcctcaaAgagtattggtccctgaaaca	7	11	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3490921	G	G	3490921	3	3	110	1	0	0	0	0	1	0	0	0	18154	72	3	5	1236	5	ZNF597	16	3490921	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	1009999	3490921	86863832	389	107032											
ANKS3	124401	broad.mit.edu	37	chr16	4777189	4777189	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taactctctcctaaacaaacGcaagatatgctagacatggc	6	11	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4777189	A	A	4777189	1	1	110	0	1	0	0	0	0	0	0	0	690	1102	38	4		4	ANKS3	16	4777189	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1286268	4777189	85577564	390	107033											
ALG1	56052	broad.mit.edu	37	chr16	5135859	5135859	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcagtttacttggttcaCaggttcccaggcccacccag	9	13	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5135859	T	T	5135859	1	4	110	0	1	0	0	0	0	0	0	0	510	493	17	4		4	ALG1	16	5135859	3'UTR	SNP	C	TCGA-44-2662-01A-01D-0969-08	358670	5135859	85218894	391	107034											
ZC3H7A	29066	broad.mit.edu	37	chr16	11857553	11857553	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acattttaatattgttctgcCatagatttttcaaatatata	3	5	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11857553	T	T	11857553	1	4	110	0	1	0	0	0	0	0	0	0	17698	609	21	4		4	ZC3H7A	16	11857553	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	6721694	11857553	78497200	392	107035											
PDXDC1	23042	broad.mit.edu	37	chr16	15098196	15098196	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcagaattttcaggtaaaGacatgatgagtttccagtga	10	5	1	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15098196	C	C	15098196	1	2	110	0	1	0	0	0	0	0	0	0	11790	957	33	4		4	PDXDC1	16	15098196	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3240643	15098196	75256557	393	107036											
PDXDC1	23042	broad.mit.edu	37	chr16	15098227	15098227	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttccagtgaagacttttatGagtcgggtgtagactgaaag	12	5	0	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15098227	A	A	15098227	1	1	110	0	1	0	0	0	0	0	0	0	11790	1305	45	4		4	PDXDC1	16	15098227	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	31	15098227	75256526	394	107037											
C16orf45	89927	broad.mit.edu	37	chr16	15677017	15677017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctactttcacagggagCaagaagaagacaaggaaatg	10	8	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15677017	A	A	15677017	3	1	110	1	0	0	0	0	1	0	0	0	1828	711	25	3	501	3	C16orf45	16	15677017	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	578790	15677017	74677736	395	107038											
CP110	9738	broad.mit.edu	37	chr16	19553224	19553224	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tataggaaatagaagagcagGagaaaatgttaaaagagaag	12	1	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19553224	C	C	19553224	3	2	110	1	0	0	0	0	1	0	0	0	3820	1175	41	4	2083	4	CP110	16	19553224	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	3876207	19553224	70801529	396	107039											
C16orf62	57020	broad.mit.edu	37	chr16	19641032	19641032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgaagcctcctgtttGctgtaatgcatactatgttg	9	10	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19641032	A	A	19641032	1	1	110	0	1	0	0	0	0	0	0	0	1839	1334	46	4		4	C16orf62	16	19641032	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	87808	19641032	70713721	397	107040											
ACSM2A	123876	broad.mit.edu	37	chr16	20492313	20492313	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgtagtatgatggtttaaGaacagggactgtggggctga	16	3	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20492313	A	A	20492313	1	1	110	0	1	0	0	0	0	0	0	0	183	957	33	4		4	ACSM2A	16	20492313	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	851281	20492313	69862440	398	107041											
SEZ6L2	26470	broad.mit.edu	37	chr16	29883923	29883923	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcctcctgccctgggcctCaaaccctgggcttcatccct	8	19	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29883923	G	G	29883923	1	3	110	0	1	0	0	0	0	0	0	0	14257	841	29	4		4	SEZ6L2	16	29883923	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	9391610	29883923	60470830	399	107042											
ZNF668	79759	broad.mit.edu	37	chr16	31073109	31073109	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagtgcacccggctatgcttCgtgaggctggcacgctcggc	15	13	0	1	rs144972780	byFrequency	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31073109	T	T	31073109	2	4	110	1	0	0	0	0	0	0	0	1	18202	871	31	4		4	ZNF668	16	31073109	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	1189186	31073109	59281644	400	107043											
ITGAX	3687	broad.mit.edu	37	chr16	31374752	31374752	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttcttgcctctcccactCtgtcatactggaaaactgtc	6	14	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31374752	T	T	31374752	1	4	110	0	1	0	0	0	0	0	0	0	7959	928	32	4		4	ITGAX	16	31374752	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	301643	31374752	58980001	401	107044											
PHKB	5257	broad.mit.edu	37	chr16	47723058	47723058	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagttaaacagcttctgctgGatattctgcagcctcaacag	8	10	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47723058	C	C	47723058	3	2	110	1	0	0	0	0	1	0	0	0	11940	1174	41	4	2997	4	PHKB	16	47723058	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	16348306	47723058	42631695	402	107045											
N4BP1	9683	broad.mit.edu	37	chr16	48594762	48594762	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtagggtatttttagagtatCtcgaaacctttgaaccccag	9	8	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48594762	T	T	48594762	3	4	110	1	0	0	0	0	1	0	0	0	10203	913	32	4	922	4	N4BP1	16	48594762	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	871704	48594762	41759991	403	107046											
SLC6A2	6530	broad.mit.edu	37	chr16	55725967	55725967	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcttgaaagaggccacggtCagtgctcagtgaccaccaag	12	12	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55725967	T	T	55725967	1	4	110	0	1	0	0	0	0	0	0	0	14797	841	29	4		4	SLC6A2	16	55725967	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	7131205	55725967	34628786	404	107047											
CNOT1	23019	broad.mit.edu	37	chr16	58580600	58580600	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcatgctcctgatgtagCtcagctaatacattcataat	6	9	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58580600	T	T	58580600	2	4	110	1	0	0	0	0	0	0	0	1	3649	796	28	4		4	CNOT1	16	58580600	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	2854633	58580600	31774153	405	107048											
CDH5	1003	broad.mit.edu	37	chr16	66430157	66430157	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttttccttttccctcattCttccaaaactggcataatca	2	13	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66430157	T	T	66430157	1	4	110	0	1	0	0	0	0	0	0	0	3143	928	32	4		4	CDH5	16	66430157	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	7849557	66430157	23924596	406	107049											
RRAD	6236	broad.mit.edu	37	chr16	66958740	66958740	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctgcttcaggcccgtcctCcacaccgccgaagatgcgcg	10	18	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66958740	G	G	66958740	3	3	110	1	0	0	0	0	1	0	0	0	13782	864	30	4	599	4	RRAD	16	66958740	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	528583	66958740	23396013	407	107050											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67854848	67854848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcagatgactaccggaagcGagtagggtaagccagggtca	14	8	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67854848	T	T	67854848	3	4	110	1	0	0	0	0	1	0	0	0	16757	1058	37	3	94	3	TSNAXIP1	16	67854848	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	896108	67854848	22499905	408	107051											
LCAT	3931	broad.mit.edu	37	chr16	67976321	67976321	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccagggagccccaagagaGatgaagccatcaataaagcg	11	12	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67976321	C	C	67976321	3	2	110	1	0	0	0	0	1	0	0	0	8730	932	33	4	637	4	LCAT	16	67976321	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	121473	67976321	22378432	409	107052											
PDPR	55066	broad.mit.edu	37	chr16	70190452	70190452	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tataaacgcctcaccatgttCatcctggacgaccatgattc	6	13	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70190452	T	T	70190452	2	4	110	1	0	0	0	0	0	0	0	1	11783	825	29	4		4	PDPR	16	70190452	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	2214131	70190452	20164301	410	107053											
ZNF821	55565	broad.mit.edu	37	chr16	71913922	71913922	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactacctccttgcaagatgCtaacctgcaataaaaaaggt	6	10	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71913922	A	A	71913922	1	1	110	0	1	0	0	0	0	0	0	0	18307	812	28	3		3	ZNF821	16	71913922	5'UTR	SNP	C	TCGA-44-2662-01A-01D-0969-08	1723470	71913922	18440831	411	107054											
ZFHX3	463	broad.mit.edu	37	chr16	72821294	72821294	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggaaaagaagggggcttCgctgccgaagcccgggagac	18	9	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72821294	T	T	72821294	2	4	110	1	0	0	0	0	0	0	0	1	17760	871	31	4		4	ZFHX3	16	72821294	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	907372	72821294	17533459	412	107055											
BCAR1	9564	broad.mit.edu	37	chr16	75263784	75263784	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctcacactgctccaggtaGaagagcagcagctgccggtc	12	14	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75263784	A	A	75263784	2	1	110	1	0	0	0	0	0	0	0	1	1353	933	33	4		4	BCAR1	16	75263784	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	2442490	75263784	15090969	413	107056											
DYNLRB2	83657	broad.mit.edu	37	chr16	80577335	80577335	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccttaagacaaacatcttcGaatttgacatcaaaaatata	3	8	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80577335	A	A	80577335	1	1	110	0	1	0	0	0	0	0	0	0	4891	1073	37	4		4	DYNLRB2	16	80577335	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	5313551	80577335	9777418	414	107057											
APRT	353	broad.mit.edu	37	chr16	88876676	88876681	+	Intron	DEL	TGAGCC	-	-													cttgctgttacctggctgtgTgagcccagcctatgtctcaa					rs8191488		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88876681	-	-	88876676	6	5	110	0	1	1	0	1	0	0	0	0	821	1711	59	0		0	APRT	16	88876676	Intron	DEL	TGAGCC	TCGA-44-2662-01A-01D-0969-08	8299341	88876676	1478077	415	107058											
EIF4A1	1973	broad.mit.edu	37	chr17	7480517	7480517	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcttgaatagctaatgattCttgaaaaatagtaagtgcca	8	5	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7480517	G	G	7480517	1	3	110	0	1	0	0	0	0	0	0	0	5066	928	32	4		4	EIF4A1	17	7480517	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08		7480517	73714693	416	107059											
TP53	7157	broad.mit.edu	37	chr17	7577099	7577099	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcctctgtgcgccggtctCtcccaggacaggcacaaaca	9	16	2	0	rs121912660		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7577099	G	G	7577099	3	3	110	1	0	0	0	0	1	0	0	0	16505	913	32	4	447	4	TP53	17	7577099	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	96582	7577099	73618111	417	107060											
CNTROB	116840	broad.mit.edu	37	chr17	7851748	7851748	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattcctggggaaatgggctGagggctggggagacaggccc	18	8	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7851748	A	A	7851748	1	1	110	0	1	0	0	0	0	0	0	0	3683	1305	45	4		4	CNTROB	17	7851748	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	274649	7851748	73343462	418	107061											
TTC19	54902	broad.mit.edu	37	chr17	15903643	15903643	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgctgcgcattactctctCcgcctcgccgaagagtggat	11	13	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15903643	A	A	15903643	1	1	110	0	1	0	0	0	0	0	0	0	16812	870	30	3		3	TTC19	17	15903643	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	8051895	15903643	65291567	419	107062											
FLCN	201163	broad.mit.edu	37	chr17	17122443	17122443	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgggtcagctcccgcccttCtgtactctctggcaacacag	9	16	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17122443	A	A	17122443	4	1	110	1	0	0	0	0	0	1	0	0	5978	922	32	3	811	3	FLCN	17	17122443	Nonsense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1218800	17122443	64072767	420	107063											
LGALS9	3965	broad.mit.edu	37	chr17	25967714	25967714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagaacggaagctgggGgcccgaggagaggaagacac	19	8	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25967714	T	T	25967714	3	4	110	1	0	0	0	0	1	0	0	0	8820	1232	43	2	258	2	LGALS9	17	25967714	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	8845271	25967714	55227496	421	107064											
NOS2	4843	broad.mit.edu	37	chr17	26086939	26086939	+	Intron	DEL	C	-	-													actctgatggttgtgaattaCcagcattttcgagctcagga							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26086939	-	-	26086939	6	5	110	0	1	1	0	1	0	0	0	0	10638	522	18	0		0	NOS2	17	26086939	Intron	DEL	C	TCGA-44-2662-01A-01D-0969-08	119225	26086939	55108271	422	107065											
NOS2	4843	broad.mit.edu	37	chr17	26110161	26110161	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggaagacagcaggaagatCaacaatgagatggccttaca	11	8	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26110161	T	T	26110161	1	4	110	0	1	0	0	0	0	0	0	0	10638	841	29	4		4	NOS2	17	26110161	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	23222	26110161	55085049	423	107066											
NLK	51701	broad.mit.edu	37	chr17	26449576	26449576	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacattggaaaacaaggtgtGgaactgatttctctgtcttt	9	6	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26449576	C	C	26449576	1	2	110	0	1	0	0	0	0	0	0	0	10561	1363	47	4		4	NLK	17	26449576	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	339415	26449576	54745634	424	107067											
TLCD1	116238	broad.mit.edu	37	chr17	27052158	27052158	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgggttgctggcctcagtGaacaagtacagactgccaac	11	11	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27052158	A	A	27052158	1	1	110	0	1	0	0	0	0	0	0	0	16060	1305	45	4		4	TLCD1	17	27052158	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	602582	27052158	54143052	425	107068											
TAOK1	57551	broad.mit.edu	37	chr17	27825560	27825560	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagtatttggatttcaatGaaagaaattcaatgttggta	10	2	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27825560	A	A	27825560	1	1	110	0	1	0	0	0	0	0	0	0	15666	1305	45	4		4	TAOK1	17	27825560	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	773402	27825560	53369650	426	107069											
UNC45B	146862	broad.mit.edu	37	chr17	33491319	33491319	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaacagaaatttgggagtGgtttggctgggtggctctgg	17	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33491319	A	A	33491319	1	1	110	0	1	0	0	0	0	0	0	0	17115	1363	47	4		4	UNC45B	17	33491319	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	5665759	33491319	47703891	427	107070											
ACACA	31	broad.mit.edu	37	chr17	35580233	35580233	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcctgtgattggaacctaGaagctggtgatgagttcaga	12	6	1	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35580233	C	C	35580233	1	2	110	0	1	0	0	0	0	0	0	0	106	957	33	4		4	ACACA	17	35580233	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2088914	35580233	45614977	428	107071											
KRT12	3859	broad.mit.edu	37	chr17	39022848	39022848	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaaaaaaattcccaAagcgcctccaaaagagatct	6	9	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39022848	T	T	39022848	1	4	110	0	1	0	0	0	0	0	0	0	8520	29	1	5		5	KRT12	17	39022848	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	3442615	39022848	42172362	429	107072											
DNAJC7	7266	broad.mit.edu	37	chr17	40140658	40140658	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacaactttccctctttcatCttgcttaccctcactaggca	3	15	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40140658	G	G	40140658	1	3	110	0	1	0	0	0	0	0	0	0	4694	928	32	4		4	DNAJC7	17	40140658	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1117810	40140658	41054552	430	107073											
VPS25	84313	broad.mit.edu	37	chr17	40926569	40926569	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacacatatgtgtgtgggaGaggaaggggcaggtgtttct	17	5	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40926569	C	C	40926569	1	2	110	0	1	0	0	0	0	0	0	0	17323	957	33	4		4	VPS25	17	40926569	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	785911	40926569	40268641	431	107074											
BRCA1	672	broad.mit.edu	37	chr17	41267812	41267812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagactagcagggtaggggGggagaaaaagaaaataaatg	15	4	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41267812	T	T	41267812	1	4	110	0	1	0	0	0	0	0	0	0	1507	1247	43	2		2	BRCA1	17	41267812	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	341243	41267812	39927398	432	107075											
CRHR1	1394	broad.mit.edu	37	chr17	43912048	43912048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaagcactcgatccgtgCccgagtggcccgtgccatgt	13	14	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43912048	A	A	43912048	3	1	110	1	0	0	0	0	1	0	0	0	3903	739	26	3	1307	3	CRHR1	17	43912048	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	2644236	43912048	37283162	433	107076											
HOXB1	3211	broad.mit.edu	37	chr17	46608134	46608134	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccccaccgtagcggccctCgcttgcatagctgtcaaccg	9	19	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46608134	T	T	46608134	3	4	110	1	0	0	0	0	1	0	0	0	7366	893	31	4	780	4	HOXB1	17	46608134	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	2696086	46608134	34587076	434	107077											
MYCBPAP	84073	broad.mit.edu	37	chr17	48602072	48602073	+	Intron	INS	-	GT	GT													tttcaggtcttagaacaggcINSgtgtgtgtgtgtgtgtgtgt							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	48602073	GT	GT	48602072	6	5	110	0	1	1	1	0	0	0	0	0	10113	783	27	0		0	MYCBPAP	17	48602072	Intron	INS	-	TCGA-44-2662-01A-01D-0969-08	1993938	48602072	32593138	435	107078											
LPO	4025	broad.mit.edu	37	chr17	56344683	56344683	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaacaggaagtccccgggatGagacagcctcagtctctcca	11	13	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56344683	A	A	56344683	1	1	110	0	1	0	0	0	0	0	0	0	9009	1305	45	4		4	LPO	17	56344683	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	7742611	56344683	24850527	436	107079											
BZRAP1	9256	broad.mit.edu	37	chr17	56381763	56381763	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttctcctcctcgttctctGaggacagggaacaaagagag	10	11	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56381763	A	A	56381763	1	1	110	0	1	0	0	0	0	0	0	0	1587	1305	45	4		4	BZRAP1	17	56381763	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	37080	56381763	24813447	437	107080											
TEX14	56155	broad.mit.edu	37	chr17	56650712	56650712	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatgatgagaagatgactaGaaaaatcaaacaatatattc	6	4	1	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56650712	C	C	56650712	1	2	110	0	1	0	0	0	0	0	0	0	15900	957	33	4		4	TEX14	17	56650712	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	268949	56650712	24544498	438	107081											
DHX40	79665	broad.mit.edu	37	chr17	57651094	57651094	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttactagaaatttacttttCtttcaggatatcttatttgg	5	6	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57651094	G	G	57651094	1	3	110	0	1	0	0	0	0	0	0	0	4552	928	32	4		4	DHX40	17	57651094	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1000382	57651094	23544116	439	107082											
BCAS3	54828	broad.mit.edu	37	chr17	58946004	58946004	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggagatggtcaagtccattCaatttaagacacctatttat	8	7	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58946004	G	G	58946004	3	3	110	1	0	0	0	0	1	0	0	0	1357	827	29	4	570	4	BCAS3	17	58946004	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1294910	58946004	22249206	440	107083											
INTS2	57508	broad.mit.edu	37	chr17	60005151	60005151	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaaaccctagttgtgcctcGagtcgactcggacaccaaga	9	14	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60005151	C	C	60005151	1	2	110	0	1	0	0	0	0	0	0	0	7848	1073	37	4		4	INTS2	17	60005151	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1059147	60005151	21190059	441	107084											
TLK2	11011	broad.mit.edu	37	chr17	60613585	60613585	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgctgcaaaggaggcaAcggaggagcagtctgctctg	16	9	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60613585	G	G	60613585	3	3	110	1	0	0	0	0	1	0	0	0	16067	43	2	5	440	5	TLK2	17	60613585	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08	608434	60613585	20581625	442	107085											
FTSJ3	117246	broad.mit.edu	37	chr17	61899270	61899270	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagcccttgctgccctactCaggctctggtagtacccacc	10	16	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61899270	G	G	61899270	1	3	110	0	1	0	0	0	0	0	0	0	6149	841	29	4		4	FTSJ3	17	61899270	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1285685	61899270	19295940	443	107086											
CACNG4	27092	broad.mit.edu	37	chr17	65027117	65027117	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccgacggacgacccctgtGtgagccgcctgccctttctc	10	17	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65027117	T	T	65027117	2	4	110	1	0	0	0	0	0	0	0	1	2585	1364	48	3		3	CACNG4	17	65027117	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	3127847	65027117	16168093	444	107087											
ABCA8	10351	broad.mit.edu	37	chr17	66873505	66873505	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaagaaacttaatactttGatatccaggaaaggagtttc	8	5	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66873505	C	C	66873505	1	2	110	0	1	0	0	0	0	0	0	0	38	1305	45	4		4	ABCA8	17	66873505	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1846388	66873505	14321705	445	107088											
COG1	9382	broad.mit.edu	37	chr17	71193340	71193340	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgggaaaggtaattgtttCaaagaggatggtttcttctt	11	3	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71193340	G	G	71193340	1	3	110	0	1	0	0	0	0	0	0	0	3689	841	29	4		4	COG1	17	71193340	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	4319835	71193340	10001870	446	107089											
SLC25A19	60386	broad.mit.edu	37	chr17	73274132	73274132	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtacagagacccgcggtCtttgattcggacaggagaac	13	10	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73274132	G	G	73274132	1	3	110	0	1	0	0	0	0	0	0	0	14595	928	32	4		4	SLC25A19	17	73274132	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	2080792	73274132	7921078	447	107090											
LLGL2	3993	broad.mit.edu	37	chr17	73559280	73559280	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggcagtgcccaggacatGgcaggcgccatgttgctctc	14	12	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73559280	A	A	73559280	1	1	110	0	1	0	0	0	0	0	0	0	8908	1363	47	4		4	LLGL2	17	73559280	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	285148	73559280	7635930	448	107091											
ENOSF1	55556	broad.mit.edu	37	chr18	685777	685777	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctttgcttatttttgtttGagctcgcctactgcaagacc	7	12	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	685777	C	C	685777	1	2	110	0	1	0	0	0	0	0	0	0	5167	1305	45	4		4	ENOSF1	18	685777	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08		685777	77391471	449	107092											
IMPA2	3613	broad.mit.edu	37	chr18	12029064	12029064	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtgggtggggcacttcctGaagtccccaccaactgaatt	11	12	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12029064	A	A	12029064	1	1	110	0	1	0	0	0	0	0	0	0	7793	1305	45	4		4	IMPA2	18	12029064	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	11343287	12029064	66048184	450	107093											
DSG3	1830	broad.mit.edu	37	chr18	29046859	29046859	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatgtggctgtagcattgtGaattacttctcttttcagaa	9	6	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29046859	A	A	29046859	1	1	110	0	1	0	0	0	0	0	0	0	4818	1305	45	4		4	DSG3	18	29046859	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	17017795	29046859	49030389	451	107094											
KIAA1632	57724	broad.mit.edu	37	chr18	43497628	43497628	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagagtgtctcctgccataGatggaacacacttactgctc	8	11	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43497628	C	C	43497628	1	2	110	0	1	0	0	0	0	0	0	0	8319	957	33	4		4	KIAA1632	18	43497628	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	14450769	43497628	34579620	452	107095											
SMAD4	4089	broad.mit.edu	37	chr18	48573361	48573361	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcactgtttccaaaggatCaaaattgcttcagaaattgg	7	7	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48573361	T	T	48573361	1	4	110	0	1	0	0	0	0	0	0	0	14874	841	29	4		4	SMAD4	18	48573361	5'UTR	SNP	C	TCGA-44-2662-01A-01D-0969-08	5075733	48573361	29503887	453	107096											
SMAD4	4089	broad.mit.edu	37	chr18	48575671	48575671	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaaacaattaagatctctCaggattaacactgcagagta	6	7	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48575671	G	G	48575671	4	3	110	1	0	0	0	0	0	1	0	0	14874	838	29	4	441	4	SMAD4	18	48575671	Nonsense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	2310	48575671	29501577	454	107097											
MPND	84954	broad.mit.edu	37	chr19	4348887	4348887	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtcttgaactcctgacctCgtgatctacctgcctcagcc	8	15	3	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4348887	T	T	4348887	1	4	110	0	1	0	0	0	0	0	0	0	9825	899	31	4		4	MPND	19	4348887	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08		4348887	54780096	455	107098											
EVI5L	115704	broad.mit.edu	37	chr19	7918279	7918279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgggggctgccctccGtactctaaagatcggccgct	12	14	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7918279	T	T	7918279	1	4	110	0	1	0	0	0	0	0	0	0	5332	1160	40	3		3	EVI5L	19	7918279	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3569392	7918279	51210704	456	107099											
MUC16	94025	broad.mit.edu	37	chr19	9068944	9068944	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtccagggtcagttggcCaagagatgtcaccccagaag	13	10	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9068944	G	G	9068944	3	3	110	1	0	0	0	0	1	0	0	0	10067	594	21	4	25349	4	MUC16	19	9068944	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1150665	9068944	50060039	457	107100											
MAN2B1	4125	broad.mit.edu	37	chr19	12773980	12773980	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggttgcagtgagccgagAtcgcaccactgcactccagc	12	13	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12773980	T	T	12773980	1	4	110	0	1	0	0	0	0	0	0	0	9308	348	12	5		5	MAN2B1	19	12773980	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08	3705036	12773980	46355003	458	107101											
CD97	976	broad.mit.edu	37	chr19	14507264	14507264	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggcttcaagttcatacctGaggatccgaaggtctgcaca	10	11	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14507264	C	C	14507264	3	2	110	1	0	0	0	0	1	0	0	0	3079	1291	45	4	475	4	CD97	19	14507264	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	1733284	14507264	44621719	459	107102											
CD97	976	broad.mit.edu	37	chr19	14507289	14507289	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccgaaggtctgcacaggtaGaggccccaggaagacgccgt	14	12	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14507289	C	C	14507289	1	2	110	0	1	0	0	0	0	0	0	0	3079	957	33	4		4	CD97	19	14507289	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	25	14507289	44621694	460	107103											
OR7A5	26659	broad.mit.edu	37	chr19	14938176	14938176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctttatgtctttattcCtcagactatagataaagggg	7	9	3	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14938176	A	A	14938176	3	1	110	1	0	0	0	0	1	0	0	0	11310	681	24	2	85	2	OR7A5	19	14938176	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	430887	14938176	44190807	461	107104											
MAST3	23031	broad.mit.edu	37	chr19	18255868	18255868	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccccgcgctctctgtcctcGaacccgtcgtcccgtgactc	8	20	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18255868	T	T	18255868	2	4	110	1	0	0	0	0	0	0	0	1	9418	1045	37	3		3	MAST3	19	18255868	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	3317692	18255868	40873115	462	107105											
ELL	8178	broad.mit.edu	37	chr19	18583425	18583425	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggagccactgggagaggaGagccgcccattgcccaagca	15	12	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18583425	C	C	18583425	1	2	110	0	1	0	0	0	0	0	0	0	5104	957	33	4		4	ELL	19	18583425	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	327557	18583425	40545558	463	107106											
TSHZ3	57616	broad.mit.edu	37	chr19	31768409	31768409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggggcggcggggtggCcacagcagccttctccgcca	16	15	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768409	A	A	31768409	3	1	110	1	0	0	0	0	1	0	0	0	16750	739	26	3	959	3	TSHZ3	19	31768409	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	13184984	31768409	27360574	464	107107											
ZNF507	22847	broad.mit.edu	37	chr19	32844370	32844370	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagaaagaaatgaaaccattCcagatatcccagtaagtgtg	8	8	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32844370	G	G	32844370	3	3	110	1	0	0	0	0	1	0	0	0	18080	855	30	4	636	4	ZNF507	19	32844370	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1075961	32844370	26284613	465	107108											
SLC7A9	11136	broad.mit.edu	37	chr19	33351508	33351508	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctgcactgattcagctgTtacctgtaagggtttctaag	9	10	3	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33351508	C	C	33351508	1	2	110	0	1	0	0	0	0	0	0	0	14819	1740	60	5		5	SLC7A9	19	33351508	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	507138	33351508	25777475	466	107109											
GPATCH1	55094	broad.mit.edu	37	chr19	33581687	33581687	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaactctttttttttcaggAtggacaccctctacctttgt	5	10	3	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33581687	G	G	33581687	2	3	110	1	0	0	0	0	0	0	0	1	6655	347	12	5		5	GPATCH1	19	33581687	Silent	SNP	A	TCGA-44-2662-01A-01D-0969-08	230179	33581687	25547296	467	107110											
GPATCH1	55094	broad.mit.edu	37	chr19	33600726	33600726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagctcagctcaaggccagGagtctggcccagaacgctca	12	14	4	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33600726	T	T	33600726	3	4	110	1	0	0	0	0	1	0	0	0	6655	1165	41	3	1431	3	GPATCH1	19	33600726	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	19039	33600726	25528257	468	107111											
GRAMD1A	57655	broad.mit.edu	37	chr19	35502533	35502533	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagggaccccagaacttgCggagctggaggcagccctgg	16	13	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35502533	T	T	35502533	1	4	110	0	1	0	0	0	0	0	0	0	6813	783	27	4		4	GRAMD1A	19	35502533	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	1901807	35502533	23626450	469	107112											
SBSN	374897	broad.mit.edu	37	chr19	36017721	36017721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtttctctgcttccttcCcagcctggtggaccccagtg	9	15	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36017721	A	A	36017721	3	1	110	1	0	0	0	0	1	0	0	0	13976	623	22	2	325	2	SBSN	19	36017721	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	515188	36017721	23111262	470	107113											
RBM42	79171	broad.mit.edu	37	chr19	36122006	36122006	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgcagcagatgggaatgctGagtcaggcccctcaccctga	12	14	2	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36122006	C	C	36122006	1	2	110	0	1	0	0	0	0	0	0	0	13244	1305	45	4		4	RBM42	19	36122006	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	104285	36122006	23006977	471	107114											
RYR1	6261	broad.mit.edu	37	chr19	39025783	39025783	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctcccactccctccaggaGagacaggtgccatggtgtcc	10	15	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39025783	C	C	39025783	3	2	110	1	0	0	0	0	1	0	0	0	13879	943	33	4	11680	4	RYR1	19	39025783	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2903777	39025783	20103200	472	107115											
ZNF546	339327	broad.mit.edu	37	chr19	40519640	40519640	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgcaaaatctatttatctCaattgcagacaggggaaaaa	7	6	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40519640	G	G	40519640	3	3	110	1	0	0	0	0	1	0	0	0	18105	827	29	4	481	4	ZNF546	19	40519640	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1493857	40519640	18609343	473	107116											
AKT2	208	broad.mit.edu	37	chr19	40745964	40745964	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caactcacagtgaggaacggGtgcctggtgttctggaggac	15	9	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40745964	A	A	40745964	2	1	110	1	0	0	0	0	0	0	0	1	480	1252	44	4		4	AKT2	19	40745964	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	226324	40745964	18383019	474	107117											
LTBP4	8425	broad.mit.edu	37	chr19	41105459	41105459	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccctcaactggcagccacTgacgtgagtgggcagtccct	12	14	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41105459	G	G	41105459	3	3	110	1	0	0	0	0	1	0	0	0	9163	1580	55	5	387	5	LTBP4	19	41105459	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	359495	41105459	18023524	475	107118			2	85		3	3	40	N	T_C	2.18749e-07
LTBP4	8425	broad.mit.edu	37	chr19	41105476	41105476	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cactgacgtgagtgggcagtCcctcccctaccaaatcctcc	8	17	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41105476	G	G	41105476	1	3	110	0	1	0	0	0	0	0	0	0	9163	870	30	4		4	LTBP4	19	41105476	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	17	41105476	18023507	476	107119			2	85		3	3	40	N	T_C	2.18749e-07
LTBP4	8425	broad.mit.edu	37	chr19	41105498	41105498	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccctaccaaatcctcccTcaggaactcctagctttgcc	4	19	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41105498	G	G	41105498	1	3	110	0	1	0	0	0	0	0	0	0	9163	1566	54	5		5	LTBP4	19	41105498	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	22	41105498	18023485	477	107120			2	85		3	3	40	N	T_C	2.18749e-07
ZNF224	7767	broad.mit.edu	37	chr19	44604934	44604934	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcatgagactgagattGcatatgtttgatgctatagg	12	4	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44604934	A	A	44604934	1	1	110	0	1	0	0	0	0	0	0	0	17904	1334	46	4		4	ZNF224	19	44604934	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3499436	44604934	14524049	478	107121											
TOMM40	10452	broad.mit.edu	37	chr19	45406211	45406211	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgtcggcatgtggctggTatccaaggtggccaggaact	15	9	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45406211	G	G	45406211	1	3	110	0	1	0	0	0	0	0	0	0	16481	1653	57	5		5	TOMM40	19	45406211	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	801277	45406211	13722772	479	107122											
TRAPPC6A	79090	broad.mit.edu	37	chr19	45668079	45668079	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttggtcttgccctcaggagGaagctggacgggcaggccgg	17	11	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45668079	A	A	45668079	1	1	110	0	1	0	0	0	0	0	0	0	16587	1189	41	4		4	TRAPPC6A	19	45668079	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	261868	45668079	13460904	480	107123											
EML2	24139	broad.mit.edu	37	chr19	46116895	46116895	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagagcgggccacagcgttGatatcagtgccgtccgcccc	13	14	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46116895	C	C	46116895	3	2	110	1	0	0	0	0	1	0	0	0	5139	1280	45	4	229	4	EML2	19	46116895	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	448816	46116895	13012088	481	107124											
DMPK	1760	broad.mit.edu	37	chr19	46283154	46283154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggtgggggaaaagaacCgagggtcaccagaaagggca	19	6	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46283154	A	A	46283154	3	1	110	1	0	0	0	0	1	0	0	0	4624	652	23	1	1818	1	DMPK	19	46283154	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	166259	46283154	12845829	482	107125											
IGFL1	374918	broad.mit.edu	37	chr19	46733777	46733777	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacaggctttgtcgcaggtGagtcctgtcccctccgtggg	14	12	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46733777	A	A	46733777	1	1	110	0	1	0	0	0	0	0	0	0	7656	1305	45	4		4	IGFL1	19	46733777	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	450623	46733777	12395206	483	107126											
BAX	581	broad.mit.edu	37	chr19	49459574	49459574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccttttctactttgccaGcaaactggtgctcaaggtgg	10	12	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49459574	T	T	49459574	3	4	110	1	0	0	0	0	1	0	0	0	1333	971	34	3	367	3	BAX	19	49459574	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	2725797	49459574	9669409	484	107127											
FPR1	2357	broad.mit.edu	37	chr19	52249102	52249102	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttctgatgagtgggtaatCctaaaataagcaggaaatgc	10	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52249102	A	A	52249102	1	1	110	0	1	0	0	0	0	0	0	0	6098	870	30	3		3	FPR1	19	52249102	3'UTR	SNP	C	TCGA-44-2662-01A-01D-0969-08	2789528	52249102	6879881	485	107128											
RDH13	112724	broad.mit.edu	37	chr19	55560138	55560138	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactcgctcctcctctggaaGagaggggtggaggaggagac	16	10	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55560138	A	A	55560138	1	1	110	0	1	0	0	0	0	0	0	0	13300	957	33	4		4	RDH13	19	55560138	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	3311036	55560138	3568845	486	107129											
RDH13	112724	broad.mit.edu	37	chr19	55560242	55560242	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtgaatgtggcctgtgccgGaaacagggtctgtgccgaag	16	8	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55560242	C	C	55560242	1	2	110	0	1	0	0	0	0	0	0	0	13300	1189	41	4		4	RDH13	19	55560242	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	104	55560242	3568741	487	107130											
FIZ1	84922	broad.mit.edu	37	chr19	56104103	56104103	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccggagccagacgggggttCcccggacgccggttcccttt	15	15	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56104103	T	T	56104103	3	4	110	1	0	0	0	0	1	0	0	0	5957	864	30	4	290	4	FIZ1	19	56104103	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	543861	56104103	3024880	488	107131											
NLRP13	126204	broad.mit.edu	37	chr19	56423835	56423835	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atacagactggtggtagtctGagtgattgactggagatcgt	14	5	1	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56423835	C	C	56423835	3	2	110	1	0	0	0	0	1	0	0	0	10570	1299	45	4	1809	4	NLRP13	19	56423835	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	319732	56423835	2705148	489	107132											
ISM1	140862	broad.mit.edu	37	chr20	13217012	13217012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgggaaagactggcacccAtgattcaattgcctccacct	8	13	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13217012	G	G	13217012	1	3	110	0	1	0	0	0	0	0	0	0	7930	232	8	5		5	ISM1	20	13217012	Intron	SNP	A	TCGA-44-2662-01A-01D-0969-08		13217012	49808508	490	107133											
DSTN	11034	broad.mit.edu	37	chr20	17581487	17581487	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaaaagaaagaaggctgtCattttttgtctcagtgcaga	10	5	2	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17581487	T	T	17581487	2	4	110	1	0	0	0	0	0	0	0	1	4824	813	29	4		4	DSTN	20	17581487	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	4364475	17581487	45444033	491	107134											
RALGAPA2	57186	broad.mit.edu	37	chr20	20475971	20475971	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtgataacagcagtttatGaggggtcatggcttacaaat	13	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20475971	A	A	20475971	1	1	110	0	1	0	0	0	0	0	0	0	13122	1305	45	4		4	RALGAPA2	20	20475971	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2894484	20475971	42549549	492	107135											
MYLK2	85366	broad.mit.edu	37	chr20	30418929	30418929	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacatgtggagtatgggggTgatcacctacatgctgtgag	15	6	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30418929	C	C	30418929	3	2	110	1	0	0	0	0	1	0	0	0	10151	1696	59	5	1443	5	MYLK2	20	30418929	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	9942958	30418929	32606591	493	107136											
C20orf114	92747	broad.mit.edu	37	chr20	31874063	31874063	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagcagcttcccaaaggaGggagagagttcctcatcacg	13	10	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31874063	A	A	31874063	1	1	110	0	1	0	0	0	0	0	0	0	2104	1015	35	4		4	C20orf114	20	31874063	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	1455134	31874063	31151457	494	107137											
NFS1	9054	broad.mit.edu	37	chr20	34284400	34284400	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctgcaagccaagaaacaGagatatataacatcagttcc	7	9	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34284400	C	C	34284400	1	2	110	0	1	0	0	0	0	0	0	0	10480	957	33	4		4	NFS1	20	34284400	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	2410337	34284400	28741120	495	107138											
EPB41L1	2036	broad.mit.edu	37	chr20	34766489	34766489	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatttcaggatatttctctCtctcagcccagtcaggtcct	6	14	5	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34766489	G	G	34766489	1	3	110	0	1	0	0	0	0	0	0	0	5194	928	32	4		4	EPB41L1	20	34766489	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	482089	34766489	28259031	496	107139											
C20orf4	25980	broad.mit.edu	37	chr20	34828224	34828229	+	In_Frame_Del	DEL	TGGAGA	-	-													cttcatcagcgaagccacagTggagaagctacagcccgaga					rs138100023		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34828229	-	-	34828224	7	5	110	1	0	1	0	1	0	0	0	0	2133	1696	59	0	436	0	C20orf4	20	34828224	In_Frame_Del	DEL	TGGAGA	TCGA-44-2662-01A-01D-0969-08	61735	34828224	28197296	497	107140											
PTPN1	5770	broad.mit.edu	37	chr20	49196208	49196208	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaccagccgaagtgaacaCtaataggacttcctcttgct	7	12	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49196208	G	G	49196208	1	3	110	0	1	0	0	0	0	0	0	0	12885	580	20	4		4	PTPN1	20	49196208	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	14367984	49196208	13829312	498	107141											
MOCS3	27304	broad.mit.edu	37	chr20	49575979	49575979	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgctggcgggtcggcccctCgtgtctgccagtgccttgcg	16	14	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49575979	T	T	49575979	2	4	110	1	0	0	0	0	0	0	0	1	9786	871	31	4		4	MOCS3	20	49575979	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	379771	49575979	13449541	499	107142											
CHRNA4	1137	broad.mit.edu	37	chr20	61982028	61982028	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgatgaggttgatggtgtaGaagagcggcagccgccggat	17	6	0	5			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61982028	T	T	61982028	3	4	110	1	0	0	0	0	1	0	0	0	3416	933	33	3	1156	3	CHRNA4	20	61982028	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	12406049	61982028	1043492	500	107143											
RTEL1	51750	broad.mit.edu	37	chr20	62321110	62321110	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcgccccacagttcctctCtgggcaggagtggtaccggc	12	16	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62321110	G	G	62321110	3	3	110	1	0	0	0	0	1	0	0	0	13831	913	32	4	2123	4	RTEL1	20	62321110	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	339082	62321110	704410	501	107144											
PCMTD2	55251	broad.mit.edu	37	chr20	62896764	62896764	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagtgggagggatccttgtCatgccactggaagagaaggt	15	6	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62896764	T	T	62896764	2	4	110	1	0	0	0	0	0	0	0	1	11681	813	29	4		4	PCMTD2	20	62896764	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	575654	62896764	128756	502	107145											
KRTAP23-1	337963	broad.mit.edu	37	chr21	31720897	31720897	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaggaatgggaggagaAgtttccacagcagcagttgt	13	8	1	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31720897	C	C	31720897	3	2	110	1	0	0	0	0	1	0	0	0	8613	72	3	5	173	5	KRTAP23-1	21	31720897	Missense_Mutation	SNP	A	TCGA-44-2662-01A-01D-0969-08		31720897	16408998	503	107146											
RUNX1	861	broad.mit.edu	37	chr21	37077123	37077123	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagaaaagagaaggaaggaaGaaaggaaggaaggaaggaag	18	0	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37077123	C	C	37077123	1	2	110	0	1	0	0	0	0	0	0	0	13857	957	33	4		4	RUNX1	21	37077123	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	5356226	37077123	11052772	504	107147											
SETD4	54093	broad.mit.edu	37	chr21	37422508	37422508	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggcaaggaagcacaagctGatcaagatctgtagttacgt	11	8	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37422508	A	A	37422508	1	1	110	0	1	0	0	0	0	0	0	0	14246	1305	45	4		4	SETD4	21	37422508	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	345385	37422508	10707387	505	107148											
TRAPPC10	7109	broad.mit.edu	37	chr21	45483287	45483287	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcatcactagaccacaGggggtgggccagtgttcata	13	9	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45483287	A	A	45483287	1	1	110	0	1	0	0	0	0	0	0	0	16581	1015	35	4		4	TRAPPC10	21	45483287	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	8060779	45483287	2646608	506	107149											
C21orf29	54084	broad.mit.edu	37	chr21	46122352	46122352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctagctgccagccagcttGctgcacctcctccccaagcc	8	19	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46122352	T	T	46122352	1	4	110	0	1	0	0	0	0	0	0	0	2146	1334	46	3		3	C21orf29	21	46122352	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	639065	46122352	2007543	507	107150											
PCBP3	54039	broad.mit.edu	37	chr21	47337485	47337486	+	Intron	DEL	TC	-	-													caggttgcagtctgacggggTctctctctctctctaggcct							TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47337486	-	-	47337485	6	5	110	0	1	1	0	1	0	0	0	0	11596	1682	58	0		0	PCBP3	21	47337485	Intron	DEL	TC	TCGA-44-2662-01A-01D-0969-08	1215133	47337485	792410	508	107151											
C22orf36	388886	broad.mit.edu	37	chr22	24985872	24985872	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgggttgaggaaggccacatCtctgtagaggatatcaggaa	14	7	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24985872	G	G	24985872	3	3	110	1	0	0	0	0	1	0	0	0	2168	913	32	4	736	4	C22orf36	22	24985872	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08		24985872	26318694	509	107152											
SEZ6L	23544	broad.mit.edu	37	chr22	26771546	26771546	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctcctgtgttcagtagcaGaagcggcagcagagacgtcg	15	10	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26771546	A	A	26771546	3	1	110	1	0	0	0	0	1	0	0	0	14256	956	33	4	2891	4	SEZ6L	22	26771546	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	1785674	26771546	24533020	510	107153											
C22orf42	150297	broad.mit.edu	37	chr22	32548011	32548011	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgaattgttttgcatgTcaactacatgtaaataaagc	8	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32548011	C	C	32548011	1	2	110	0	1	0	0	0	0	0	0	0	2171	1682	58	5		5	C22orf42	22	32548011	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	5776465	32548011	18756555	511	107154											
TMPRSS6	164656	broad.mit.edu	37	chr22	37469468	37469468	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatgtaaatacagagggGttggtgggtgttgagaggag	18	2	0	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37469468	T	T	37469468	1	4	110	0	1	0	0	0	0	0	0	0	16374	1276	44	3		3	TMPRSS6	22	37469468	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08	4921457	37469468	13835098	512	107155											
GCAT	23464	broad.mit.edu	37	chr22	38211697	38211697	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgacagggcctgggccccTggtgtccctgctgcggcagc	15	16	0	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38211697	C	C	38211697	3	2	110	1	0	0	0	0	1	0	0	0	6346	1580	55	5	946	5	GCAT	22	38211697	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	742229	38211697	13092869	513	107156											
MGAT3	4248	broad.mit.edu	37	chr22	39883979	39883979	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggtgccgcgccgcgtcatCaacgccatcaacgtcaacca	10	16	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39883979	G	G	39883979	3	3	110	1	0	0	0	0	1	0	0	0	9637	816	29	4	629	4	MGAT3	22	39883979	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	1672282	39883979	11420587	514	107157											
BRD1	23774	broad.mit.edu	37	chr22	50192686	50192686	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcagctcgatcagcaggcGagcgcgctccaggtcgtgcc	14	15	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50192686	A	A	50192686	3	1	110	1	0	0	0	0	1	0	0	0	1510	1058	37	4	1610	4	BRD1	22	50192686	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	10308707	50192686	1111880	515	107158											
TYMP	1890	broad.mit.edu	37	chr22	50967929	50967929	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccctccccacgcaccgatCtgtgcgccctgcgcgctccc	8	22	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50967929	A	A	50967929	3	1	110	1	0	0	0	0	1	0	0	0	16937	912	32	3	1274	3	TYMP	22	50967929	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	775243	50967929	336637	516	107159											
FAM9C	171484	broad.mit.edu	37	chrX	13058114	13058114	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attcaaaccaaaactgacttGacatagtttgtactataaag	5	7	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13058114	C	C	13058114	1	2	110	0	1	0	0	0	0	0	0	0	5718	1305	45	4		4	FAM9C	23	13058114	Intron	SNP	G	TCGA-44-2662-01A-01D-0969-08		13058114	142212446	517	107160											
KLHL15	80311	broad.mit.edu	37	chrX	24006555	24006555	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtggaagatgaggtgattCcaccggtgataaacaatttg	13	5	0	4			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24006555	G	G	24006555	3	3	110	1	0	0	0	0	1	0	0	0	8442	855	30	4	520	4	KLHL15	23	24006555	Missense_Mutation	SNP	C	TCGA-44-2662-01A-01D-0969-08	10948441	24006555	131264005	518	107161											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29972752	29972752	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatcctacctgatatgcttGaaaagcattatggatataag	7	6	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29972752	C	C	29972752	3	2	110	1	0	0	0	0	1	0	0	0	7731	1291	45	4	1349	4	IL1RAPL1	23	29972752	Missense_Mutation	SNP	G	TCGA-44-2662-01A-01D-0969-08	5966197	29972752	125297808	519	107162											
CACNA1F	778	broad.mit.edu	37	chrX	49075761	49075761	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtcccctcagctcctagCtcccagccaaaggctcacat	7	17	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49075761	T	T	49075761	1	4	110	0	1	0	0	0	0	0	0	0	2569	812	28	4		4	CACNA1F	23	49075761	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	19103009	49075761	106194799	520	107163											
CACNA1F	778	broad.mit.edu	37	chrX	49086776	49086776	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacgaagagcacgagcagTgcaatgtgcagcagcggcac	14	10	0	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49086776	A	A	49086776	2	1	110	1	0	0	0	0	0	0	0	1	2569	1683	59	5		5	CACNA1F	23	49086776	Silent	SNP	T	TCGA-44-2662-01A-01D-0969-08	11015	49086776	106183784	521	107164											
HEPH	9843	broad.mit.edu	37	chrX	65476147	65476147	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaacctacaggatgaaacTttcttggagagcaataaaat	7	6	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65476147	A	A	65476147	2	1	110	1	0	0	0	0	0	0	0	1	7121	1596	56	5		5	HEPH	23	65476147	Silent	SNP	T	TCGA-44-2662-01A-01D-0969-08	16389371	65476147	89794413	522	107165											
EDA2R	60401	broad.mit.edu	37	chrX	65824429	65824429	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctgggaaagcagctcCtaagaatcttgccaacctga	8	12	2	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65824429	A	A	65824429	1	1	110	0	1	0	0	0	0	0	0	0	4944	696	24	2		2	EDA2R	23	65824429	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	348282	65824429	89446131	523	107166											
OPHN1	4983	broad.mit.edu	37	chrX	67331931	67331932	+	Intron	DEL	AG	-	-													acacacacacacacacacacAgagagagattcggagaaaga					rs59924749		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67331932	-	-	67331931	6	5	110	0	1	1	0	1	0	0	0	0	10969	203	7	0		0	OPHN1	23	67331931	Intron	DEL	AG	TCGA-44-2662-01A-01D-0969-08	1507502	67331931	87938629	524	107167											
MED12	9968	broad.mit.edu	37	chrX	70351937	70351937	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccaggagatgaactccctCttggagaacatcgccaaggc	10	14	1	3			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70351937	G	G	70351937	2	3	110	1	0	0	0	0	0	0	0	1	9521	900	32	4		4	MED12	23	70351937	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	3020006	70351937	84918623	525	107168											
MED12	9968	broad.mit.edu	37	chrX	70352266	70352266	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtatggctggtggcccccctCattgctaaactgcccacctc	9	16	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70352266	A	A	70352266	2	1	110	1	0	0	0	0	0	0	0	1	9521	813	29	3		3	MED12	23	70352266	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	329	70352266	84918294	526	107169											
CYLC1	1538	broad.mit.edu	37	chrX	83126620	83126620	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaacgaaatctaagtTggtaaagcatatataaatat	5	3	1	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83126620	A	A	83126620	1	1	110	0	1	0	0	0	0	0	0	0	4174	1827	63	5		5	CYLC1	23	83126620	Intron	SNP	T	TCGA-44-2662-01A-01D-0969-08	12774354	83126620	72143940	527	107170											
PLP1	5354	broad.mit.edu	37	chrX	103044264	103044264	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctttcattttcctgcagttCcaaatgaccttccacctgtt	4	13	2	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103044264	T	T	103044264	2	4	110	1	0	0	0	0	0	0	0	1	12199	854	30	4		4	PLP1	23	103044264	Silent	SNP	C	TCGA-44-2662-01A-01D-0969-08	19917644	103044264	52226296	528	107171											
WDR44	54521	broad.mit.edu	37	chrX	117566949	117566949	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttcttctccgggaaacctCagttttttgtcttaaggcct	7	10	4	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117566949	T	T	117566949	1	4	110	0	1	0	0	0	0	0	0	0	17423	841	29	4		4	WDR44	23	117566949	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	14522685	117566949	37703611	529	107172											
ODZ1	10178	broad.mit.edu	37	chrX	123870875	123870875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactgaatcctgcgtgctGgttgggggagctggagcagc	18	8	0	1			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123870875	T	T	123870875	2	4	110	1	0	0	0	0	0	0	0	1	10929	1335	47	2		2	ODZ1	23	123870875	Silent	SNP	G	TCGA-44-2662-01A-01D-0969-08	6303926	123870875	31399685	530	107173											
ZNF75D	7626	broad.mit.edu	37	chrX	134424857	134424857	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggaacagtgggactctctCacaggggtgcattttccata	11	9	2	0			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134424857	A	A	134424857	1	1	110	0	1	0	0	0	0	0	0	0	18263	841	29	3		3	ZNF75D	23	134424857	Intron	SNP	C	TCGA-44-2662-01A-01D-0969-08	10553982	134424857	20845703	531	107174											
ATP11C	286410	broad.mit.edu	37	chrX	138832284	138832284	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaagcagatattgtacaTtgtaaggtaagcagcatcat	10	5	1	2			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138832284	A	A	138832284	3	1	110	1	0	0	0	0	1	0	0	0	1125	1493	52	5	752	5	ATP11C	23	138832284	Missense_Mutation	SNP	T	TCGA-44-2662-01A-01D-0969-08	4407427	138832284	16438276	532	107175											
GPN2	54707	broad.mit.edu	37	chr1	27216290	27216290	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagtggccgcggagggggtCgagcttggcacgcagccagt	19	10	0	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27216290	T	T	27216290	3	4	111	1	0	0	0	0	1	0	0	0	6683	884	31	4	654	4	GPN2	1	27216290	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01		27216290	222034331	1	107176											
KIAA1522	57648	broad.mit.edu	37	chr1	33237497	33237497	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccccagcactggggccatCggccccccagaaaccactgc	9	20	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33237497	T	T	33237497	3	4	111	1	0	0	0	0	1	0	0	0	8308	893	31	4	2739	4	KIAA1522	1	33237497	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01	6021207	33237497	216013124	2	107177											
CSF1	1435	broad.mit.edu	37	chr1	110465931	110465931	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaggactctgagggaactGagggcagctccctcttgcct	15	11	2	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110465931	A	A	110465931	3	1	111	1	0	0	0	0	1	0	0	0	3965	1291	45	4	710	4	CSF1	1	110465931	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	77228434	110465931	138784690	3	107178											
JTB	10899	broad.mit.edu	37	chr1	153949260	153949260	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaggtgcttgctgaaaggAaagataaatgccagccccag	12	8	0	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153949260	G	G	153949260	1	3	111	0	1	0	0	0	0	0	0	0	8037	261	9	5		5	JTB	1	153949260	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	43483329	153949260	95301361	4	107179											
AQP10	89872	broad.mit.edu	37	chr1	154296116	154296116	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttggccatcctggacagaCggaacaagggagtccctgcg	13	12	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	154296116	T	T	154296116	3	4	111	1	0	0	0	0	1	0	0	0	824	527	19	4	559	4	AQP10	1	154296116	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01	346856	154296116	94954505	5	107180											
KIAA0907	22889	broad.mit.edu	37	chr1	155904166	155904166	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcgctccccgcggacatgGcgaccgcttctactcaacca	9	18	2	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155904166	A	A	155904166	1	1	111	0	1	0	0	0	0	0	0	0	8269	1218	42	4		4	KIAA0907	1	155904166	5'UTR	SNP	G	TCGA-44-2665-01A-01D-1040-01	1608050	155904166	93346455	6	107181											
DDR2	4921	broad.mit.edu	37	chr1	162740301	162740301	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccaggggaggaggagtcAggtgaggatgatgtggtggg	22	4	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162740301	G	G	162740301	2	3	111	1	0	0	0	0	0	0	0	1	4370	202	7	5		5	DDR2	1	162740301	Silent	SNP	A	TCGA-44-2665-01A-01D-1040-01	6836135	162740301	86510320	7	107182											
TNNT2	7139	broad.mit.edu	37	chr1	201341152	201341152	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccacctgcctgaggcacaTaccttcaacagctgcttctg	7	16	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201341152	A	A	201341152	1	1	111	0	1	0	0	0	0	0	0	0	16454	1421	49	5		5	TNNT2	1	201341152	Intron	SNP	T	TCGA-44-2665-01A-01D-1040-01	38600851	201341152	47909469	8	107183											
ZC3H11A	9877	broad.mit.edu	37	chr1	203787861	203787861	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataataagtagtctggagacCtggtgggccaataaaaaata	10	5	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203787861	G	G	203787861	1	3	111	0	1	0	0	0	0	0	0	0	17686	696	24	4		4	ZC3H11A	1	203787861	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	2446709	203787861	45462760	9	107184											
SMYD2	56950	broad.mit.edu	37	chr1	214454774	214454775	+	Intron	INS	-	GGC	GGC													agtactgcttcaccaggtagINSggcggcggcggcggcggcgg							TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGC	214454775	GGC	GGC	214454774	6	5	111	0	1	1	1	0	0	0	0	0	14936	1015	35	0		0	SMYD2	1	214454774	Intron	INS	-	TCGA-44-2665-01A-01D-1040-01	10666913	214454774	34795847	10	107185											
C1orf58	148362	broad.mit.edu	37	chr1	222900585	222900585	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtatgaaacagccaattTctatcaaaaagctggtaagc	9	8	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	222900585	C	C	222900585	3	2	111	1	0	0	0	0	1	0	0	0	2072	1783	62	5	682	5	C1orf58	1	222900585	Missense_Mutation	SNP	T	TCGA-44-2665-01A-01D-1040-01	8445811	222900585	26350036	11	107186											
AHCTF1	25909	broad.mit.edu	37	chr1	247055226	247055226	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaataatggcacacctttCaagaataaaagaaaagataa	5	6	2	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247055226	T	T	247055226	1	4	111	0	1	0	0	0	0	0	0	0	408	841	29	4		4	AHCTF1	1	247055226	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	24154641	247055226	2195395	12	107187											
OR14A16	284532	broad.mit.edu	37	chr1	247978972	247978972	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgaatgcaaaatgcacatAtttttattggtagaaaaccc	6	7	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247978972	C	C	247978972	3	2	111	1	0	0	0	0	1	0	0	0	11039	446	16	5	873	5	OR14A16	1	247978972	Missense_Mutation	SNP	A	TCGA-44-2665-01A-01D-1040-01	923746	247978972	1271649	13	107188											
SOS1	6654	broad.mit.edu	37	chr2	39278344	39278344	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggactgccttcatctgtcaTttctactgtatcttctatat	6	10	6	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39278344	C	C	39278344	3	2	111	1	0	0	0	0	1	0	0	0	15050	1493	52	5	3268	5	SOS1	2	39278344	Missense_Mutation	SNP	T	TCGA-44-2665-01A-01D-1040-01		39278344	203921029	14	107189											
PSME4	23198	broad.mit.edu	37	chr2	54126863	54126863	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactcgggaggctgacgcatGagaagagcttaaacccagga	13	9	0	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54126863	T	T	54126863	1	4	111	0	1	0	0	0	0	0	0	0	12815	1305	45	3		3	PSME4	2	54126863	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	14848519	54126863	189072510	15	107190											
LRRTM4	80059	broad.mit.edu	37	chr2	77746185	77746185	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaggcatttaaatgtgccCggctcaattccttggatgtc	12	9	1	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77746185	T	T	77746185	2	4	111	1	0	0	0	0	0	0	0	1	9129	639	23	4		4	LRRTM4	2	77746185	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01	23619322	77746185	165453188	16	107191											
CNNM3	26505	broad.mit.edu	37	chr2	97492446	97492446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacatgtccctggcgttcCgatgctgctccatcgaggac	12	13	0	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97492446	A	A	97492446	1	1	111	0	1	0	0	0	0	0	0	0	3646	667	23	1		1	CNNM3	2	97492446	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	19746261	97492446	145706927	17	107192											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671706	125671706	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atattcatcatcttctgtatCatcggcatcatgacccggtt	6	11	6	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125671706	T	T	125671706	2	4	111	1	0	0	0	0	0	0	0	1	3682	816	29	4		4	CNTNAP5	2	125671706	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01	28179260	125671706	117527667	18	107193											
GPR17	2840	broad.mit.edu	37	chr2	128409116	128409116	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagccatggggcctcctgCgccacccagcgcatcctggc	12	19	0	0	rs144990681		TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128409116	T	T	128409116	2	4	111	1	0	0	0	0	0	0	0	1	6732	776	27	4		4	GPR17	2	128409116	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01	2737410	128409116	114790257	19	107194											
CASP8	841	broad.mit.edu	37	chr2	202131375	202131375	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaaagagaatgttggagGaaagcaatctgtccttcctg	12	6	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202131375	T	T	202131375	4	4	111	1	0	0	0	0	0	1	0	0	2703	1175	41	3	349	3	CASP8	2	202131375	Nonsense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	73722259	202131375	41067998	20	107195											
CASP8	841	broad.mit.edu	37	chr2	202137390	202137390	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatattttcatagagatggaGaagagggtcatcctgggaga	14	4	2	4			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202137390	C	C	202137390	3	2	111	1	0	0	0	0	1	0	0	0	2703	933	33	4	732	4	CASP8	2	202137390	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	6015	202137390	41061983	21	107196											
PTPRN	5798	broad.mit.edu	37	chr2	220166479	220166479	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagcttagggctgattgcGcagtgaacttgagggatgca	15	7	0	4			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220166479	A	A	220166479	1	1	111	0	1	0	0	0	0	0	0	0	12915	1102	38	4		4	PTPRN	2	220166479	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	18029089	220166479	23032894	22	107197											
SLC19A3	80704	broad.mit.edu	37	chr2	228567058	228567058	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatcaaatggaaacaaagaGaaaattaagtgatgcttatt	8	3	1	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228567058	A	A	228567058	1	1	111	0	1	0	0	0	0	0	0	0	14543	957	33	4		4	SLC19A3	2	228567058	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	8400579	228567058	14632315	23	107198											
ANO7	50636	broad.mit.edu	37	chr2	242148934	242148934	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggcctcggccccagtttGccgcctcagcccccatgaca	10	18	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242148934	C	C	242148934	3	2	111	1	0	0	0	0	1	0	0	0	702	1319	46	4	1527	4	ANO7	2	242148934	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	13581876	242148934	1050439	24	107199											
ITPR1	3708	broad.mit.edu	37	chr3	4759028	4759028	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctaacatttccttctctctCtctccccttttttcttttcc	0	17	4	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4759028	A	A	4759028	1	1	111	0	1	0	0	0	0	0	0	0	7990	928	32	3		3	ITPR1	3	4759028	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01		4759028	193263402	25	107200											
ZNF589	51385	broad.mit.edu	37	chr3	48297913	48297913	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccccaaggccatgaacGccctgttccaggggaggcct	12	14	0	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48297913	A	A	48297913	1	1	111	0	1	0	0	0	0	0	0	0	18148	1102	38	4		4	ZNF589	3	48297913	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	43538885	48297913	149724517	26	107201											
NDUFAF3	25915	broad.mit.edu	37	chr3	49060156	49060156	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggatcccaccaggacatcAccgaagacagcttttccctc	8	15	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49060156	G	G	49060156	3	3	111	1	0	0	0	0	1	0	0	0	10371	159	6	5	302	5	NDUFAF3	3	49060156	Missense_Mutation	SNP	A	TCGA-44-2665-01A-01D-1040-01	762243	49060156	148962274	27	107202											
MST1R	4486	broad.mit.edu	37	chr3	49928032	49928032	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtactccctgtccaggatGtcgcgggccaaaccaaagtc	10	13	0	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49928032	A	A	49928032	2	1	111	1	0	0	0	0	0	0	0	1	9985	1368	48	4		4	MST1R	3	49928032	Silent	SNP	G	TCGA-44-2665-01A-01D-1040-01	867876	49928032	148094398	28	107203											
NSUN3	63899	broad.mit.edu	37	chr3	93803376	93803376	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtatatatggggagaAacgtaagactgagtttgcaa	12	3	0	4			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93803376	G	G	93803376	1	3	111	0	1	0	0	0	0	0	0	0	10774	29	1	5		5	NSUN3	3	93803376	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	43875344	93803376	104219054	29	107204											
CD200	4345	broad.mit.edu	37	chr3	112068653	112068653	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgtactggaaacgtcaccgGaatcaggaccgaggtgagtt	13	9	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112068653	C	C	112068653	2	2	111	1	0	0	0	0	0	0	0	1	3010	1161	41	4		4	CD200	3	112068653	Silent	SNP	G	TCGA-44-2665-01A-01D-1040-01	18265277	112068653	85953777	30	107205											
PLXNA1	5361	broad.mit.edu	37	chr3	126747837	126747837	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctccctcctcccccagaGtggcgccagggccgcatggc	12	19	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126747837	A	A	126747837	2	1	111	1	0	0	0	0	0	0	0	1	12214	1043	36	4		4	PLXNA1	3	126747837	Silent	SNP	G	TCGA-44-2665-01A-01D-1040-01	14679184	126747837	71274593	31	107206											
COL25A1	84570	broad.mit.edu	37	chr4	109817864	109817864	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggccgttctctccagcgtCtccctgaggaggtgagaaag	15	11	2	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109817864	T	T	109817864	3	4	111	1	0	0	0	0	1	0	0	0	3716	913	32	4	1275	4	COL25A1	4	109817864	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01		109817864	81336412	32	107207											
NAA15	80155	broad.mit.edu	37	chr4	140265339	140265339	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attccttatatccatatacaGacatcccctgacaaggtgga	6	11	0	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140265339	A	A	140265339	5	1	111	1	0	0	0	0	0	0	1	0	10212	956	33	4	559	4	NAA15	4	140265339	Splice_Site	SNP	G	TCGA-44-2665-01A-01D-1040-01	30447475	140265339	50888937	33	107208											
TRIM60	166655	broad.mit.edu	37	chr4	165962566	165962566	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgattgtttcacagaagccGtttggccttatttctatact	7	9	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165962566	A	A	165962566	3	1	111	1	0	0	0	0	1	0	0	0	16660	1145	40	4	1344	4	TRIM60	4	165962566	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	25697227	165962566	25191710	34	107209											
FAM149A	25854	broad.mit.edu	37	chr4	187084634	187084634	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgctctctcctccgcacCgcacagactgggacgggcct	12	16	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187084634	T	T	187084634	3	4	111	1	0	0	0	0	1	0	0	0	5501	652	23	4	916	4	FAM149A	4	187084634	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01	21122068	187084634	4069642	35	107210											
GDNF	2668	broad.mit.edu	37	chr5	37835017	37835017	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcccctctccaacctcgTcaccgccctcctccggcacc	6	24	2	0	rs149499929	by1000genomes	TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	37835017	C	C	37835017	1	2	111	0	1	0	0	0	0	0	0	0	6386	1682	58	5		5	GDNF	5	37835017	Intron	SNP	T	TCGA-44-2665-01A-01D-1040-01		37835017	143080243	36	107211											
GPR98	84059	broad.mit.edu	37	chr5	89923108	89923108	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaacacctctaggaattcCattgagatcatcattaagaa	5	8	3	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89923108	A	A	89923108	2	1	111	1	0	0	0	0	0	0	0	1	6787	581	21	2		2	GPR98	5	89923108	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01	52088091	89923108	90992152	37	107212											
SPRY4	81848	broad.mit.edu	37	chr5	141693820	141693820	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttggcatccccgctggctGctttgcagatgacgctgttc	11	13	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141693820	C	C	141693820	3	2	111	1	0	0	0	0	1	0	0	0	15226	1319	46	4	49	4	SPRY4	5	141693820	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	51770712	141693820	39221440	38	107213											
CYFIP2	26999	broad.mit.edu	37	chr5	156819759	156819759	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgatgcaggggaccctggAcctcagtgacttctcctgtt	11	12	2	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156819759	G	G	156819759	1	3	111	0	1	0	0	0	0	0	0	0	4171	290	10	5		5	CYFIP2	5	156819759	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	15125939	156819759	24095501	39	107214											
KCNMB1	3779	broad.mit.edu	37	chr5	169812334	169812334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccttttctggtagagggGcagcacagtcgtgaccagga	14	9	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169812334	T	T	169812334	3	4	111	1	0	0	0	0	1	0	0	0	8144	1203	42	3	469	3	KCNMB1	5	169812334	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	12992575	169812334	11102926	40	107215											
NSD1	64324	broad.mit.edu	37	chr5	176711019	176711019	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcagattataattttaaaCatttctatatgtaccgttct	3	8	3	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176711019	G	G	176711019	1	3	111	0	1	0	0	0	0	0	0	0	10764	493	17	4		4	NSD1	5	176711019	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	6898685	176711019	4204241	41	107216											
F13A1	2162	broad.mit.edu	37	chr6	6167746	6167746	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttttgcttggccagaacaTccctggtctcattgatgcga	9	11	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6167746	C	C	6167746	3	2	111	1	0	0	0	0	1	0	0	0	5383	1435	50	5	357	5	F13A1	6	6167746	Missense_Mutation	SNP	T	TCGA-44-2665-01A-01D-1040-01		6167746	164947321	42	107217											
GPX6	257202	broad.mit.edu	37	chr6	28474302	28474302	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccatttatcacatgaataAaccgaggactaagaagggaa	8	7	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28474302	T	T	28474302	1	4	111	0	1	0	0	0	0	0	0	0	6810	29	1	5		5	GPX6	6	28474302	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	22306556	28474302	142640765	43	107218											
MAP7	9053	broad.mit.edu	37	chr6	136681011	136681011	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgtttctctgatcactgGttttctacgaagaagaaaaa	7	9	3	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136681011	A	A	136681011	3	1	111	1	0	0	0	0	1	0	0	0	9358	1261	44	4	406	4	MAP7	6	136681011	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	108206709	136681011	34434056	44	107219											
GRM1	2911	broad.mit.edu	37	chr6	146351336	146351336	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacaattggacctatgtctCtgcagtccacacggaaggta	9	10	1	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	146351336	T	T	146351336	3	4	111	1	0	0	0	0	1	0	0	0	6862	913	32	4	685	4	GRM1	6	146351336	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01	9670325	146351336	24763731	45	107220											
CUX1	1523	broad.mit.edu	37	chr7	101559646	101559646	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctttccccagatgtcttCagccccatttccagcagaac	5	15	3	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	101559646	T	T	101559646	1	4	111	0	1	0	0	0	0	0	0	0	4097	841	29	4		4	CUX1	7	101559646	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01		101559646	57579017	46	107221											
TNFRSF10B	8795	broad.mit.edu	37	chr8	22926500	22926500	+	Translation_Start_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtattttgtgggcgcagaGattgcggggttctccggccg	17	8	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22926500	C	C	22926500	1	2	111	1	0	0	0	0	0	0	0	0	16404	957	33	4		4	TNFRSF10B	8	22926500	Translation_Start_Site	SNP	G	TCGA-44-2665-01A-01D-1040-01		22926500	123437522	47	107222											
WRN	7486	broad.mit.edu	37	chr8	30945312	30945312	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttagaaaacctcaatagTggcacggtagaaccaactca	7	10	3	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30945312	A	A	30945312	3	1	111	1	0	0	0	0	1	0	0	0	17529	1693	59	5	1494	5	WRN	8	30945312	Missense_Mutation	SNP	T	TCGA-44-2665-01A-01D-1040-01	8018812	30945312	115418710	48	107223											
NRG1	3084	broad.mit.edu	37	chr8	32621515	32621515	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttccaccacaaccccgcGcatgacagtaacagcctccc	5	20	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32621515	A	A	32621515	2	1	111	1	0	0	0	0	0	0	0	1	10742	1074	38	4		4	NRG1	8	32621515	Silent	SNP	G	TCGA-44-2665-01A-01D-1040-01	1676203	32621515	113742507	49	107224											
C8orf45	157777	broad.mit.edu	37	chr8	67786698	67786699	+	Intron	INS	-	A	A													agtctttcaatcagtaagtcINSaaaaaaagaaataattttat							TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67786699	A	A	67786698	6	5	111	0	1	1	1	0	0	0	0	0	2456	841	29	0		0	C8orf45	8	67786698	Intron	INS	-	TCGA-44-2665-01A-01D-1040-01	35165183	67786698	78577324	50	107225											
APBA1	320	broad.mit.edu	37	chr9	72131361	72131361	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgcgcgggtagggcgCgaactcggcctccttctcgg	15	14	1	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72131361	T	T	72131361	3	4	111	1	0	0	0	0	1	0	0	0	758	768	27	4	1795	4	APBA1	9	72131361	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01		72131361	69082070	51	107226											
HEMGN	55363	broad.mit.edu	37	chr9	100693564	100693564	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattcaaataaatgcttgtAataacagtgccaggtccccc	7	10	1	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100693564	G	G	100693564	1	3	111	0	1	0	0	0	0	0	0	0	7117	377	13	5		5	HEMGN	9	100693564	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	28562203	100693564	40519867	52	107227											
HSPA5	3309	broad.mit.edu	37	chr9	128000573	128000573	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaggggacatacatcaaGcagtaccaggtcacctgtaa	10	9	2	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128000573	A	A	128000573	3	1	111	1	0	0	0	0	1	0	0	0	7483	971	34	4	723	4	HSPA5	9	128000573	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	27307009	128000573	13212858	53	107228											
SVIL	6840	broad.mit.edu	37	chr10	29819539	29819539	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgtcagcacagcttaccctGaaaagcaacctcttggcggc	9	14	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	29819539	A	A	29819539	2	1	111	1	0	0	0	0	0	0	0	1	15539	1281	45	4		4	SVIL	10	29819539	Silent	SNP	G	TCGA-44-2665-01A-01D-1040-01		29819539	105715208	54	107229											
SVIL	6840	broad.mit.edu	37	chr10	29821397	29821397	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaacacaggtcgaggagtGaatcattctgccagggacgt	12	10	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29821397	A	A	29821397	1	1	111	0	1	0	0	0	0	0	0	0	15539	1305	45	4		4	SVIL	10	29821397	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	1858	29821397	105713350	55	107230											
DEAF1	10522	broad.mit.edu	37	chr11	654161	654161	+	Intron	DEL	C	-	-													cccaagttccccccattggaCcccctttttttttttttttt					rs66594327		TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	654161	-	-	654161	6	5	111	0	1	1	0	1	0	0	0	0	4413	522	18	0		0	DEAF1	11	654161	Intron	DEL	C	TCGA-44-2665-01A-01D-1040-01		654161	134352355	56	107231											
BRSK2	9024	broad.mit.edu	37	chr11	1432844	1432844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggccagacctggctctgCctgcagcccagcccagcagg	12	17	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1432844	A	A	1432844	1	1	111	0	1	0	0	0	0	0	0	0	1533	754	26	3		3	BRSK2	11	1432844	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	778683	1432844	133573672	57	107232											
F2	2147	broad.mit.edu	37	chr11	46748537	46748537	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actccacacagcagccacatGagatgggttgtttacttctt	8	11	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46748537	A	A	46748537	1	1	111	0	1	0	0	0	0	0	0	0	5385	1305	45	4		4	F2	11	46748537	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	45315693	46748537	88257979	58	107233											
KAT5	10524	broad.mit.edu	37	chr11	65482336	65482336	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcaatgagatttaccgCaagggcaccatctccttctt	8	13	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65482336	G	G	65482336	2	3	111	1	0	0	0	0	0	0	0	1	8053	697	25	4		4	KAT5	11	65482336	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01	18733799	65482336	69524180	59	107234											
PPP1CA	5499	broad.mit.edu	37	chr11	67166721	67166721	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaccccacctttcccaccAccctcctggtcccgccactg	5	22	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	67166721	C	C	67166721	1	2	111	0	1	0	0	0	0	0	0	0	12450	174	6	5		5	PPP1CA	11	67166721	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	1684385	67166721	67839795	60	107235											
C11orf63	79864	broad.mit.edu	37	chr11	122774779	122774779	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcctttggctcccctctAcccttcccaggagacgtcaa	7	17	3	1	rs147035469	byFrequency	TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	122774779	G	G	122774779	3	3	111	1	0	0	0	0	1	0	0	0	1666	391	14	5	497	5	C11orf63	11	122774779	Missense_Mutation	SNP	A	TCGA-44-2665-01A-01D-1040-01	55608058	122774779	12231737	61	107236											
WNK1	65125	broad.mit.edu	37	chr12	993764	993764	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctagcagacaatcttttgaAtccatccttttaaaatcagc	5	10	2	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	993764	G	G	993764	1	3	111	0	1	0	0	0	0	0	0	0	17504	116	4	5		5	WNK1	12	993764	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01		993764	132858131	62	107237											
KLRK1	22914	broad.mit.edu	37	chr12	10525538	10525538	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttgtcttggagaatcAtgcatgtttgcagtgaaatt	9	5	3	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10525538	T	T	10525538	1	4	111	0	1	0	0	0	0	0	0	0	8494	232	8	5		5	KLRK1	12	10525538	3'UTR	SNP	A	TCGA-44-2665-01A-01D-1040-01	9531774	10525538	123326357	63	107238											
TMBIM6	7009	broad.mit.edu	37	chr12	50156774	50156774	+	3'UTR	DEL	A	-	-													tggtgtgttctgtgataatgAaaagcatcagaaaagctttt							TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	50156774	-	-	50156774	6	5	111	0	1	1	0	1	0	0	0	0	16106	261	9	0		0	TMBIM6	12	50156774	3'UTR	DEL	A	TCGA-44-2665-01A-01D-1040-01	39631236	50156774	83695121	64	107239	463	2									
TMBIM6	7009	broad.mit.edu	37	chr12	50156781	50156781	+	3'UTR	SNP	T	G	G													ttctgtgataatgaaaagcaTcagaaaagcttttgtacttt							TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50156781	G	G	50156781	1	3	111	0	1	0	0	0	0	0	0	0	16106	1450	50	5		5	TMBIM6	12	50156781	3'UTR	SNP	T	TCGA-44-2665-01A-01D-1040-01	7	50156781	83695114	65	107240	463	2									
ACVR1B	91	broad.mit.edu	37	chr12	52345498	52345500	+	5'UTR	DEL	GCG	-	-													gcgctgggcgctgctgggctGcggcggcggcggcggcggcg					rs10540557		TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	52345500	-	-	52345498	6	5	111	0	1	1	0	1	0	0	0	0	221	1334	46	0		0	ACVR1B	12	52345498	5'UTR	DEL	GCG	TCGA-44-2665-01A-01D-1040-01	2188717	52345498	81506397	66	107241											
KRT73	319101	broad.mit.edu	37	chr12	53012246	53012246	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccccctgagagcacagcGgagcagccgctgaagccccc	12	18	0	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53012246	A	A	53012246	2	1	111	1	0	0	0	0	0	0	0	1	8557	1103	39	4		4	KRT73	12	53012246	Silent	SNP	G	TCGA-44-2665-01A-01D-1040-01	666748	53012246	80839649	67	107242											
MSRB3	253827	broad.mit.edu	37	chr12	65813601	65813601	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgccagacccctagccaTccctccggccaggcccctgg	9	21	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65813601	G	G	65813601	1	3	111	0	1	0	0	0	0	0	0	0	9983	1450	50	5		5	MSRB3	12	65813601	Intron	SNP	T	TCGA-44-2665-01A-01D-1040-01	12801355	65813601	68038294	68	107243											
DUSP6	1848	broad.mit.edu	37	chr12	89744279	89744279	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcagacaaattagcaagcaGcaagaacgattaacagctta	8	8	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89744279	C	C	89744279	1	2	111	0	1	0	0	0	0	0	0	0	4869	986	34	4		4	DUSP6	12	89744279	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	23930678	89744279	44107616	69	107244											
PROZ	8858	broad.mit.edu	37	chr13	113815356	113815356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgtgggtgggcttaggaCgcttcacgaccccagctcag	15	12	2	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113815356	T	T	113815356	1	4	111	0	1	0	0	0	0	0	0	0	12668	551	19	4		4	PROZ	13	113815356	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01		113815356	1354522	70	107245											
LRRC16B	90668	broad.mit.edu	37	chr14	24532459	24532459	+	Intron	DEL	G	-	-													ctgtagcccctctttcccttGattttttctctgtctcccca							TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24532459	-	-	24532459	6	5	111	0	1	1	0	1	0	0	0	0	9059	1305	45	0		0	LRRC16B	14	24532459	Intron	DEL	G	TCGA-44-2665-01A-01D-1040-01		24532459	82817081	71	107246											
FOXA1	3169	broad.mit.edu	37	chr14	38061461	38061461	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggccatggtgatgagcgaGatgtacgagtagggcggctt	17	6	0	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38061461	C	C	38061461	3	2	111	1	0	0	0	0	1	0	0	0	6047	932	33	4	894	4	FOXA1	14	38061461	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01	13529002	38061461	69288079	72	107247											
RAD51L1	5890	broad.mit.edu	37	chr14	68331943	68331943	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacataggttaacatttaccAcccctcccccttgccttttt	3	16	0	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68331943	C	C	68331943	1	2	111	0	1	0	0	0	0	0	0	0	13097	174	6	5		5	RAD51L1	14	68331943	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	30270482	68331943	39017597	73	107248											
STON2	85439	broad.mit.edu	37	chr14	81862605	81862605	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcaaaaactaaggatgaCcatggggtgcccgcatgact	13	9	0	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81862605	T	T	81862605	1	4	111	0	1	0	0	0	0	0	0	0	15436	522	18	4		4	STON2	14	81862605	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	13530662	81862605	25486935	74	107249											
PAPOLA	10914	broad.mit.edu	37	chr14	97022682	97022682	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaaaaatacctactcctAtagtaggagtcaagaggaca	7	9	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97022682	G	G	97022682	3	3	111	1	0	0	0	0	1	0	0	0	11523	449	16	5	2010	5	PAPOLA	14	97022682	Missense_Mutation	SNP	A	TCGA-44-2665-01A-01D-1040-01	15160077	97022682	10326858	75	107250											
PDIA3	2923	broad.mit.edu	37	chr15	44038800	44038800	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcttgccgcggcccgcctCgccgctgcctccgacgtgct	11	20	1	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44038800	T	T	44038800	2	4	111	1	0	0	0	0	0	0	0	1	11763	871	31	4		4	PDIA3	15	44038800	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01		44038800	58492592	76	107251											
THSD4	79875	broad.mit.edu	37	chr15	72020908	72020908	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgagaagtcgttctggaCgctccatcatcaatgggaac	10	12	3	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72020908	T	T	72020908	3	4	111	1	0	0	0	0	1	0	0	0	16001	536	19	4	1408	4	THSD4	15	72020908	Missense_Mutation	SNP	C	TCGA-44-2665-01A-01D-1040-01	27982108	72020908	30510484	77	107252											
CP110	9738	broad.mit.edu	37	chr16	19554350	19554350	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatcgtttgtatttcacttCtgtcttagtttctatcagtc	5	8	5	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19554350	G	G	19554350	1	3	111	0	1	0	0	0	0	0	0	0	3820	928	32	4		4	CP110	16	19554350	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01		19554350	70800403	78	107253											
PDILT	204474	broad.mit.edu	37	chr16	20370667	20370667	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttccttgacttttggttTcttcttttgcactggaggtc	8	9	3	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20370667	C	C	20370667	3	2	111	1	0	0	0	0	1	0	0	0	11768	1792	62	5	29	5	PDILT	16	20370667	Missense_Mutation	SNP	T	TCGA-44-2665-01A-01D-1040-01	816317	20370667	69984086	79	107254											
FAM192A	80011	broad.mit.edu	37	chr16	57207598	57207598	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacctactctgcagggttgCtgtgtggattaaagaccatt	10	8	1	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57207598	T	T	57207598	1	4	111	0	1	0	0	0	0	0	0	0	5570	812	28	4		4	FAM192A	16	57207598	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	36836931	57207598	33147155	80	107255											
GPR97	222487	broad.mit.edu	37	chr16	57712045	57712045	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggactcgtgttggggggTgggtacagatgggagctgct	20	6	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57712045	G	G	57712045	1	3	111	0	1	0	0	0	0	0	0	0	6786	1711	59	5		5	GPR97	16	57712045	Intron	SNP	T	TCGA-44-2665-01A-01D-1040-01	504447	57712045	32642708	81	107256											
TMCO7	79613	broad.mit.edu	37	chr16	68941376	68941376	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagatgaagccctgtaccaGaaggtatcctctgagcaggg	13	9	1	4			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68941376	A	A	68941376	2	1	111	1	0	0	0	0	0	0	0	1	16124	933	33	4		4	TMCO7	16	68941376	Silent	SNP	G	TCGA-44-2665-01A-01D-1040-01	11229331	68941376	21413377	82	107257											
SF3B3	23450	broad.mit.edu	37	chr16	70597633	70597633	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcatcgcagagttttctaGagtaggaggctgttgtttaa	12	6	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70597633	C	C	70597633	1	2	111	0	1	0	0	0	0	0	0	0	14265	957	33	4		4	SF3B3	16	70597633	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	1656257	70597633	19757120	83	107258											
CLEC3A	10143	broad.mit.edu	37	chr16	78064470	78064470	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttatccccaggaactccgAcgaaatcaacgccctccaag	8	15	1	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78064470	G	G	78064470	3	3	111	1	0	0	0	0	1	0	0	0	3542	275	10	5	336	5	CLEC3A	16	78064470	Missense_Mutation	SNP	A	TCGA-44-2665-01A-01D-1040-01	7466837	78064470	12290283	84	107259											
MAF	4094	broad.mit.edu	37	chr16	79633806	79633808	+	5'UTR	DEL	GCC	-	-													agttctgatgccattctcctGccgccgccgccgccgccgcc					rs5818251		TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79633808	-	-	79633806	6	5	111	0	1	1	0	1	0	0	0	0	9243	1334	46	0		0	MAF	16	79633806	5'UTR	DEL	GCC	TCGA-44-2665-01A-01D-1040-01	1569336	79633806	10720947	85	107260											
DYNLRB2	83657	broad.mit.edu	37	chr16	80583586	80583586	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctagttaaatcatctttCtaatttgctagattaaaagc	4	7	3	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80583586	A	A	80583586	1	1	111	0	1	0	0	0	0	0	0	0	4891	928	32	3		3	DYNLRB2	16	80583586	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	949780	80583586	9771167	86	107261											
XYLT2	64132	broad.mit.edu	37	chr17	48432011	48432011	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacagaaggttgcagacagAcagagtctctgacctggccc	11	11	1	5			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48432011	G	G	48432011	1	3	111	0	1	0	0	0	0	0	0	0	17591	290	10	5		5	XYLT2	17	48432011	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01		48432011	32763199	87	107262											
RSAD1	55316	broad.mit.edu	37	chr17	48560141	48560141	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaacttgggccacattaAcctctccaagcctctatttt	6	12	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48560141	C	C	48560141	1	2	111	0	1	0	0	0	0	0	0	0	13805	58	2	5		5	RSAD1	17	48560141	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	128130	48560141	32635069	88	107263											
NUP85	79902	broad.mit.edu	37	chr17	73204555	73204558	+	Intron	DEL	AAAG	-	-													caaaaaaaaaaaaaaaaaaaAaagaatggaacaacttcagt					rs137871424		TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	73204558	-	-	73204555	6	5	111	0	1	1	0	1	0	0	0	0	10865	29	1	0		0	NUP85	17	73204555	Intron	DEL	AAAG	TCGA-44-2665-01A-01D-1040-01	24644414	73204555	7990655	89	107264											
ZNF407	55628	broad.mit.edu	37	chr18	72344697	72344697	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagaagggacttagatgaAcatttgcacagtaaccagca	9	8	1	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72344697	G	G	72344697	2	3	111	1	0	0	0	0	0	0	0	1	18014	40	2	5		5	ZNF407	18	72344697	Silent	SNP	A	TCGA-44-2665-01A-01D-1040-01		72344697	5732551	90	107265											
LONP1	9361	broad.mit.edu	37	chr19	5694505	5694505	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgcaggttctcgggcGtcacctccacggactcggcc	12	16	2	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5694505	A	A	5694505	3	1	111	1	0	0	0	0	1	0	0	0	8979	1145	40	4	682	4	LONP1	19	5694505	Missense_Mutation	SNP	G	TCGA-44-2665-01A-01D-1040-01		5694505	53434478	91	107266											
EML2	24139	broad.mit.edu	37	chr19	46117997	46117997	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagacattcagagttggaaGaactacccagtaaacccatc	9	10	1	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46117997	A	A	46117997	1	1	111	0	1	0	0	0	0	0	0	0	5139	957	33	4		4	EML2	19	46117997	Intron	SNP	G	TCGA-44-2665-01A-01D-1040-01	40423492	46117997	13010986	92	107267											
NKG7	4818	broad.mit.edu	37	chr19	51874995	51874995	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaggcctttggaatacaAcgctcaaaactcatcttgcc	8	11	3	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51874995	G	G	51874995	1	3	111	0	1	0	0	0	0	0	0	0	10538	58	2	5		5	NKG7	19	51874995	3'UTR	SNP	A	TCGA-44-2665-01A-01D-1040-01	5756998	51874995	7253988	93	107268											
EPB41L1	2036	broad.mit.edu	37	chr20	34782048	34782048	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagttggctccactccaggCgtggttgggcagggctgggc	18	10	0	1	rs139014428	by1000genomes	TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34782048	T	T	34782048	1	4	111	0	1	0	0	0	0	0	0	0	5194	783	27	4		4	EPB41L1	20	34782048	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01		34782048	28243472	94	107269											
DSN1	79980	broad.mit.edu	37	chr20	35399619	35399619	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtatttgttataaaaaagtCaaaatacaagatcaagcccg	6	6	2	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35399619	A	A	35399619	1	1	111	0	1	0	0	0	0	0	0	0	4820	841	29	3		3	DSN1	20	35399619	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	617571	35399619	27625901	95	107270											
HIRA	7290	broad.mit.edu	37	chr22	19419005	19419006	+	5'UTR	INS	-	GCC	GCC													ttcaggagcttcattgttcgINSgccgccgccgccgccgggct							TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	GCC	19419006	GCC	GCC	19419005	6	5	111	0	1	1	1	0	0	0	0	0	7187	1131	39	0		0	HIRA	22	19419005	5'UTR	INS	-	TCGA-44-2665-01A-01D-1040-01		19419005	31885561	96	107271											
MYH9	4627	broad.mit.edu	37	chr22	36697142	36697142	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacacaagctcctcgcaacAccctcaagccactccatcct	3	19	1	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36697142	C	C	36697142	1	2	111	0	1	0	0	0	0	0	0	0	10136	174	6	5		5	MYH9	22	36697142	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	17278137	36697142	14607424	97	107272											
TUBGCP6	85378	broad.mit.edu	37	chr22	50662903	50662903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggccccagcaaggcccCccggaactgcagaagggagg	16	13	0	1			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50662903	T	T	50662903	1	4	111	0	1	0	0	0	0	0	0	0	16896	638	22	4		4	TUBGCP6	22	50662903	Intron	SNP	C	TCGA-44-2665-01A-01D-1040-01	13965761	50662903	641663	98	107273											
MXRA5	25878	broad.mit.edu	37	chrX	3241386	3241386	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatatcagcccagcgctcCggattaatctgtttgtttgc	8	10	2	0			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3241386	T	T	3241386	2	4	111	1	0	0	0	0	0	0	0	1	10097	639	23	4		4	MXRA5	23	3241386	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01		3241386	152029174	99	107274											
PLP2	5355	broad.mit.edu	37	chrX	49029495	49029495	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatattatgcctggtgatccTgatctgcttcagtgcctcca	9	11	2	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49029495	C	C	49029495	3	2	111	1	0	0	0	0	1	0	0	0	12200	1580	55	5	122	5	PLP2	23	49029495	Missense_Mutation	SNP	T	TCGA-44-2665-01A-01D-1040-01	45788109	49029495	106241065	100	107275											
SHROOM4	57477	broad.mit.edu	37	chrX	50350711	50350713	+	In_Frame_Del	DEL	TCC	-	-													cctcctcctcctcttcctctTcctcttcttcttcttcttcc					rs6614551		TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50350713	-	-	50350711	7	5	111	1	0	1	0	1	0	0	0	0	14409	1783	62	0	1066	0	SHROOM4	23	50350711	In_Frame_Del	DEL	TCC	TCGA-44-2665-01A-01D-1040-01	1321216	50350711	104919849	101	107276											
MSN	4478	broad.mit.edu	37	chrX	64959737	64959737	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaccaagcagcgcattgaCgaatttgagtctatgtaatg	9	8	1	2			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64959737	T	T	64959737	2	4	111	1	0	0	0	0	0	0	0	1	9979	535	19	4		4	MSN	23	64959737	Silent	SNP	C	TCGA-44-2665-01A-01D-1040-01	14609026	64959737	90310823	102	107277											
DDX26B	203522	broad.mit.edu	37	chrX	134707803	134707803	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattttaagagagataagtAtgacatttctatattaaaag	6	3	1	3			TCGA-44-2665-01A-01D-1040-01	TCGA-44-2665-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134707803	G	G	134707803	1	3	111	0	1	0	0	0	0	0	0	0	4386	464	16	5		5	DDX26B	23	134707803	Intron	SNP	A	TCGA-44-2665-01A-01D-1040-01	69748066	134707803	20562757	103	107278											
MASP2	10747	broad.mit.edu	37	chr1	11087524	11087524	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccattcgaatgtccagggcGgatgcatcatgtttttgctc	10	11	1	0	rs1782455	byFrequency;by1000genomes	TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11087524	A	A	11087524	2	1	112	1	0	0	0	0	0	0	0	1	9415	1103	39	4		4	MASP2	1	11087524	Silent	SNP	G	TCGA-44-2666-01A-01W-0928-08		11087524	238163097	1	107279											
TMCO4	255104	broad.mit.edu	37	chr1	20009542	20009542	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgtggtcagtccagCcccgtgctggggccctgggt	15	15	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20009542	A	A	20009542	2	1	112	1	0	0	0	0	0	0	0	1	16121	726	26	3		3	TMCO4	1	20009542	Silent	SNP	C	TCGA-44-2666-01A-01W-0928-08	8922018	20009542	229241079	2	107280											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67242206	67242206	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagttaaaatgcgtatttAtaattaggtcatattctaca	5	5	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67242206	G	G	67242206	1	3	112	0	1	0	0	0	0	0	0	0	15841	464	16	5		5	TCTEX1D1	1	67242206	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08	47232664	67242206	182008415	3	107281											
TBX15	6913	broad.mit.edu	37	chr1	119474252	119474252	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccttacctgcctgcttTggtgatgatcatttcagttc	8	10	2	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119474252	C	C	119474252	3	2	112	1	0	0	0	0	1	0	0	0	15774	1821	63	5	1427	5	TBX15	1	119474252	Missense_Mutation	SNP	T	TCGA-44-2666-01A-01W-0928-08	52232046	119474252	129776369	4	107282											
SMCP	4184	broad.mit.edu	37	chr1	152856991	152856991	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctgccagtcaaaaggCaatcaatgctgcccaccaaa	8	13	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152856991	A	A	152856991	2	1	112	1	0	0	0	0	0	0	0	1	14903	697	25	3		3	SMCP	1	152856991	Silent	SNP	C	TCGA-44-2666-01A-01W-0928-08	33382739	152856991	96393630	5	107283											
TDRD10	126668	broad.mit.edu	37	chr1	154493861	154493861	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcaatccaggagctgaatgGtaaactcttccacaagcgaa	9	10	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154493861	C	C	154493861	3	2	112	1	0	0	0	0	1	0	0	0	15853	1261	44	4	293	4	TDRD10	1	154493861	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	1636870	154493861	94756760	6	107284											
CFHR5	81494	broad.mit.edu	37	chr1	196964798	196964798	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagtaactccacatttttCtatacttataagaccattta	2	8	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196964798	A	A	196964798	1	1	112	0	1	0	0	0	0	0	0	0	3318	928	32	3		3	CFHR5	1	196964798	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	42470937	196964798	52285823	7	107285											
TBCE	6905	broad.mit.edu	37	chr1	235596495	235596495	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgcaggatgggtgagtcaGatgattccattctctaattg	11	6	2	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235596495	C	C	235596495	1	2	112	0	1	0	0	0	0	0	0	0	15756	957	33	4		4	TBCE	1	235596495	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	38631697	235596495	13654126	8	107286											
TBCE	6905	broad.mit.edu	37	chr1	235605078	235605078	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtttgttttgtttttActtatagtggcctttggttt	9	3	0	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235605078	T	T	235605078	1	4	112	0	1	0	0	0	0	0	0	0	15756	406	14	5		5	TBCE	1	235605078	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08	8583	235605078	13645543	9	107287											
ADSS	159	broad.mit.edu	37	chr1	244601124	244601124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgataaatactacaaataacCtatctccctccaaagtgaat	3	10	1	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244601124	A	A	244601124	1	1	112	0	1	0	0	0	0	0	0	0	347	696	24	2		2	ADSS	1	244601124	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	8996046	244601124	4649497	10	107288											
TRMT61B	55006	broad.mit.edu	37	chr2	29093171	29093171	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgaaggcgccgtcgcagaCgagtgacgcaagcctagcgc	15	14	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29093171	T	T	29093171	1	4	112	0	1	0	0	0	0	0	0	0	16695	551	19	4		4	TRMT61B	2	29093171	5'UTR	SNP	C	TCGA-44-2666-01A-01W-0928-08		29093171	214106202	11	107289											
TANC1	85461	broad.mit.edu	37	chr2	160082226	160082226	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcttgggcgatggccacttCcaaacctgatatcttgatta	9	10	1	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160082226	T	T	160082226	3	4	112	1	0	0	0	0	1	0	0	0	15663	855	30	4	3925	4	TANC1	2	160082226	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	130989055	160082226	83117147	12	107290											
WDSUB1	151525	broad.mit.edu	37	chr2	160104993	160104993	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagctcttcaattttcCtcagcactttactacgcagt	5	13	3	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160104993	G	G	160104993	3	3	112	1	0	0	0	0	1	0	0	0	17468	681	24	4	275	4	WDSUB1	2	160104993	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	22767	160104993	83094380	13	107291											
UBE2E3	10477	broad.mit.edu	37	chr2	181925550	181925550	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcaaccctggtaagcaaatCtttattaacatgtacaataa	5	8	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181925550	G	G	181925550	1	3	112	0	1	0	0	0	0	0	0	0	16980	928	32	4		4	UBE2E3	2	181925550	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	21820557	181925550	61273823	14	107292											
DYTN	391475	broad.mit.edu	37	chr2	207558023	207558023	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgagggtcctgaagagaaGttttgtattctgcattgctg	12	6	2	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207558023	A	A	207558023	3	1	112	1	0	0	0	0	1	0	0	0	4901	1029	36	4	896	4	DYTN	2	207558023	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	25632473	207558023	35641350	15	107293											
DOCK10	55619	broad.mit.edu	37	chr2	225729557	225729557	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtacaagcattttccatCtcatcacaagtaaacaaagt	5	9	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225729557	G	G	225729557	1	3	112	0	1	0	0	0	0	0	0	0	4725	928	32	4		4	DOCK10	2	225729557	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	18171534	225729557	17469816	16	107294											
TTC21A	199223	broad.mit.edu	37	chr3	39179935	39179935	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagggaggtgggcaggagGgcccccaccatgaccccaga	18	12	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39179935	A	A	39179935	1	1	112	0	1	0	0	0	0	0	0	0	16813	1247	43	4		4	TTC21A	3	39179935	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08		39179935	158842495	17	107295											
SETD2	29072	broad.mit.edu	37	chr3	47162162	47162162	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtacttgtccttgagttcGatcatacacaaccccagttc	7	12	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47162162	A	A	47162162	4	1	112	1	0	0	0	0	0	1	0	0	14244	1066	37	4	3806	4	SETD2	3	47162162	Nonsense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	7982227	47162162	150860268	18	107296											
SEMA3G	56920	broad.mit.edu	37	chr3	52473930	52473930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccatcctctgcctccacgCggtccaccacgatctggtgt	8	18	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52473930	T	T	52473930	3	4	112	1	0	0	0	0	1	0	0	0	14143	768	27	4	1044	4	SEMA3G	3	52473930	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	5311768	52473930	145548500	19	107297											
SFMBT1	51460	broad.mit.edu	37	chr3	52955590	52955590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatttcgcttagagtcttGcattacaaaagtctctgaac	6	8	2	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52955590	A	A	52955590	1	1	112	0	1	0	0	0	0	0	0	0	14270	1334	46	4		4	SFMBT1	3	52955590	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	481660	52955590	145066840	20	107298											
DPPA4	55211	broad.mit.edu	37	chr3	109056430	109056430	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcccacttcctgccgcccGaagaccctttttctctccac	4	21	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109056430	A	A	109056430	1	1	112	0	1	0	0	0	0	0	0	0	4776	1073	37	4		4	DPPA4	3	109056430	5'Flank	SNP	G	TCGA-44-2666-01A-01W-0928-08	56100840	109056430	88966000	21	107299											
SSR3	6747	broad.mit.edu	37	chr3	156271586	156271587	+	Intron	INS	-	G	G													aaccctgaattaaaataaaaINSgggggaagggtacaaaaaga							TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156271587	G	G	156271586	6	5	112	0	1	1	1	0	0	0	0	0	15310	87	3	0		0	SSR3	3	156271586	Intron	INS	-	TCGA-44-2666-01A-01W-0928-08	47215156	156271586	41750844	22	107300											
SERPINI2	5276	broad.mit.edu	37	chr3	167167112	167167112	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcaccctaccagttgatGttgcagcttcactaccatct	5	14	3	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167167112	A	A	167167112	3	1	112	1	0	0	0	0	1	0	0	0	14232	1377	48	4	186	4	SERPINI2	3	167167112	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	10895526	167167112	30855318	23	107301											
TDO2	6999	broad.mit.edu	37	chr4	156829006	156829006	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagatatggaaagtattaTtaatgagagaaaaacattaa	9	1	0	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156829006	C	C	156829006	1	2	112	0	1	0	0	0	0	0	0	0	15849	1508	52	5		5	TDO2	4	156829006	Intron	SNP	T	TCGA-44-2666-01A-01W-0928-08		156829006	34325270	24	107302											
KIF20A	10112	broad.mit.edu	37	chr5	137520631	137520631	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaacagcgggaacagtggTgcaggtactagctgagtgac	15	8	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137520631	C	C	137520631	3	2	112	1	0	0	0	0	1	0	0	0	8356	1696	59	5	1869	5	KIF20A	5	137520631	Missense_Mutation	SNP	T	TCGA-44-2666-01A-01W-0928-08		137520631	43394629	25	107303											
HSPA9	3313	broad.mit.edu	37	chr5	137906812	137906812	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggggtggttctggcacCttcggcattctccagcacct	12	12	2	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137906812	T	T	137906812	3	4	112	1	0	0	0	0	1	0	0	0	7486	681	24	4	1848	4	HSPA9	5	137906812	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	386181	137906812	43008448	26	107304											
SH3RF2	153769	broad.mit.edu	37	chr5	145393551	145393551	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcagcaccccagtgctcaTcagctccagcaacccctctg	7	18	4	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145393551	C	C	145393551	3	2	112	1	0	0	0	0	1	0	0	0	14372	1435	50	5	1000	5	SH3RF2	5	145393551	Missense_Mutation	SNP	T	TCGA-44-2666-01A-01W-0928-08	7486739	145393551	35521709	27	107305											
PPT2	9374	broad.mit.edu	37	chr6	32130749	32130749	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatatattcaggggtccccaGgaactcctcggtccagagac	11	12	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32130749	C	C	32130749	1	2	112	0	1	0	0	0	0	0	0	0	12513	1015	35	4		4	PPT2	6	32130749	3'UTR	SNP	G	TCGA-44-2666-01A-01W-0928-08		32130749	138984318	28	107306											
NOTCH4	4855	broad.mit.edu	37	chr6	32164090	32164090	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttgtgggaagccctctgTcccatctaaccctgttgtcc	9	13	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32164090	A	A	32164090	1	1	112	0	1	0	0	0	0	0	0	0	10646	1682	58	5		5	NOTCH4	6	32164090	Intron	SNP	T	TCGA-44-2666-01A-01W-0928-08	33341	32164090	138950977	29	107307											
ICK	22858	broad.mit.edu	37	chr6	52870089	52870089	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgaggtctcatggccttcAgggaggaataacctgcaatg	13	8	2	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52870089	T	T	52870089	3	4	112	1	0	0	0	0	1	0	0	0	7554	188	7	5	145	5	ICK	6	52870089	Missense_Mutation	SNP	A	TCGA-44-2666-01A-01W-0928-08	20705999	52870089	118244978	30	107308											
GPNMB	10457	broad.mit.edu	37	chr7	23313199	23313199	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccgttggctgcttggccAtatttgtcactgtgatctcc	9	12	3	1	rs144208310	byFrequency	TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23313199	G	G	23313199	3	3	112	1	0	0	0	0	1	0	0	0	6685	217	8	5	1563	5	GPNMB	7	23313199	Missense_Mutation	SNP	A	TCGA-44-2666-01A-01W-0928-08		23313199	135825464	31	107309											
BAZ1B	9031	broad.mit.edu	37	chr7	72883821	72883821	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttgagcagggtgaaataActcttagatatacagatata	8	6	1	4			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72883821	G	G	72883821	1	3	112	0	1	0	0	0	0	0	0	0	1335	58	2	5		5	BAZ1B	7	72883821	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08	49570622	72883821	86254842	32	107310											
SAMD9	54809	broad.mit.edu	37	chr7	92734750	92734750	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catacaagctgaagcaaatcGgaaaacctcattgctaaatt	6	9	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92734750	A	A	92734750	4	1	112	1	0	0	0	0	0	1	0	0	13937	1124	39	4	4112	4	SAMD9	7	92734750	Nonsense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	19850929	92734750	66403913	33	107311											
IQUB	154865	broad.mit.edu	37	chr7	123101339	123101339	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatcacacacacacacacaAacatacataagattgcaaga	3	12	1	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123101339	C	C	123101339	1	2	112	0	1	0	0	0	0	0	0	0	7890	29	1	5		5	IQUB	7	123101339	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08	30366589	123101339	36037324	34	107312											
BRAF	673	broad.mit.edu	37	chr7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccactccatcgagatttcActgtagctagaccaaaatca	5	13	2	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140453136	T	T	140453136	3	4	112	1	0	0	0	0	1	0	0	0	1505	159	6	5	517	5	BRAF	7	140453136	Missense_Mutation	SNP	A	TCGA-44-2666-01A-01W-0928-08	17351797	140453136	18685527	35	107313											
INSIG1	3638	broad.mit.edu	37	chr7	155093438	155093438	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctacgtccagagtatcttCttaggttatatattgaagcg	9	7	2	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155093438	T	T	155093438	1	4	112	0	1	0	0	0	0	0	0	0	7835	928	32	4		4	INSIG1	7	155093438	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	14640302	155093438	4045225	36	107314											
MYST3	7994	broad.mit.edu	37	chr8	41839345	41839345	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacacccatattagaaggcAgagatactcaccgcattttt	6	10	1	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41839345	T	T	41839345	1	4	112	0	1	0	0	0	0	0	0	0	10198	203	7	5		5	MYST3	8	41839345	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08		41839345	104524677	37	107315											
TNFSF15	9966	broad.mit.edu	37	chr9	117568153	117568153	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtatgtggtgagtcctgcaAggaaggggagcaacaccagg	17	7	0	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117568153	C	C	117568153	3	2	112	1	0	0	0	0	1	0	0	0	16431	72	3	5	631	5	TNFSF15	9	117568153	Missense_Mutation	SNP	A	TCGA-44-2666-01A-01W-0928-08		117568153	23645278	38	107316											
DNM1	1759	broad.mit.edu	37	chr9	131016923	131016923	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttctctctgctttctctcCaactgccagccgatcgggtc	7	15	3	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131016923	T	T	131016923	1	4	112	0	1	0	0	0	0	0	0	0	4710	609	21	4		4	DNM1	9	131016923	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	13448770	131016923	10196508	39	107317											
MYO3A	53904	broad.mit.edu	37	chr10	26315294	26315294	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataattgcatgttcttttTtgccagtgcaggtgcttgac	9	7	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26315294	C	C	26315294	1	2	112	0	1	0	0	0	0	0	0	0	10170	1856	64	5		5	MYO3A	10	26315294	Intron	SNP	T	TCGA-44-2666-01A-01W-0928-08		26315294	109219453	40	107318											
SLC25A16	8034	broad.mit.edu	37	chr10	70246839	70246839	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcaaactagagtcctatctCcttactgagtttaatgttac	6	9	2	2	rs151280504	by1000genomes	TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70246839	T	T	70246839	1	4	112	0	1	0	0	0	0	0	0	0	14592	870	30	4		4	SLC25A16	10	70246839	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	43931545	70246839	65287908	41	107319											
DDIT4	54541	broad.mit.edu	37	chr10	74033978	74033978	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgtctgtcctcaccatgCctagcctttgggaccgcttc	10	15	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74033978	T	T	74033978	3	4	112	1	0	0	0	0	1	0	0	0	4364	739	26	4	6	4	DDIT4	10	74033978	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	3787139	74033978	61500769	42	107320											
HIPK3	10114	broad.mit.edu	37	chr11	33370049	33370049	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgattatagaaattataaAttattcctttggttgcagga	7	3	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33370049	C	C	33370049	1	2	112	0	1	0	0	0	0	0	0	0	7185	116	4	5		5	HIPK3	11	33370049	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08		33370049	101636467	43	107321											
NAT10	55226	broad.mit.edu	37	chr11	34129964	34129964	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactctgctgtttcaggacAtaatggcattaagatctctt	8	9	3	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34129964	G	G	34129964	1	3	112	0	1	0	0	0	0	0	0	0	10268	232	8	5		5	NAT10	11	34129964	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08	759915	34129964	100876552	44	107322											
CD82	3732	broad.mit.edu	37	chr11	44640276	44640276	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgtggccatcatcgaggtCtgagccccctcccccatccc	10	18	2	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44640276	T	T	44640276	1	4	112	0	1	0	0	0	0	0	0	0	3070	928	32	4		4	CD82	11	44640276	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	10510312	44640276	90366240	45	107323											
SLC22A6	9356	broad.mit.edu	37	chr11	62751060	62751060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagccatgcccgagaggaGccggaaggcgcagtagatgg	17	10	0	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62751060	T	T	62751060	3	4	112	1	0	0	0	0	1	0	0	0	14572	971	34	3	1146	3	SLC22A6	11	62751060	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	18110784	62751060	72255456	46	107324											
RELA	5970	broad.mit.edu	37	chr11	65429397	65429397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttccccgcacaccctggcGcagtgctgaccttgatggtg	11	16	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65429397	A	A	65429397	1	1	112	0	1	0	0	0	0	0	0	0	13324	1102	38	4		4	RELA	11	65429397	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	2678337	65429397	69577119	47	107325											
FAT3	120114	broad.mit.edu	37	chr11	92085756	92085756	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgagacctttgttttcaCccacaacatactctgttacc	4	13	3	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92085756	T	T	92085756	3	4	112	1	0	0	0	0	1	0	0	0	5748	507	18	4	480	4	FAT3	11	92085756	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	26656359	92085756	42920760	48	107326											
C12orf4	57102	broad.mit.edu	37	chr12	4634555	4634555	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtcctaaaagaaacagTataccaactggttaattttt	6	7	0	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4634555	C	C	4634555	1	2	112	0	1	0	0	0	0	0	0	0	1698	1653	57	5		5	C12orf4	12	4634555	Intron	SNP	T	TCGA-44-2666-01A-01W-0928-08		4634555	129217340	49	107327											
OVCH1	341350	broad.mit.edu	37	chr12	29598221	29598221	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaacatacctaggactttCaagacaatatagcttatacc	4	11	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29598221	G	G	29598221	3	3	112	1	0	0	0	0	1	0	0	0	11417	825	29	4	557	4	OVCH1	12	29598221	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	24963666	29598221	104253674	50	107328											
TMTC1	83857	broad.mit.edu	37	chr12	29725032	29725032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacaccctccctgtgtggcGcttacttgagagctgttctg	10	13	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29725032	A	A	29725032	1	1	112	0	1	0	0	0	0	0	0	0	16383	1102	38	4		4	TMTC1	12	29725032	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	126811	29725032	104126863	51	107329											
KRT86	3892	broad.mit.edu	37	chr12	52646152	52646152	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcaggcaggccatgtcCtgcttggccttctgcagggc	13	13	2	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52646152	T	T	52646152	1	4	112	0	1	0	0	0	0	0	0	0	8571	696	24	4		4	KRT86	12	52646152	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	22921120	52646152	81205743	52	107330											
RBM19	9904	broad.mit.edu	37	chr12	114358570	114358570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaagggctgtgacgggCccccagacctgcgctgtatt	14	12	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114358570	A	A	114358570	1	1	112	0	1	0	0	0	0	0	0	0	13229	754	26	3		3	RBM19	12	114358570	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	61712418	114358570	19493325	53	107331											
RNF10	9921	broad.mit.edu	37	chr12	121003284	121003284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggctcgggaggaacgcCgccgagagcgcaggattgag	18	9	0	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121003284	T	T	121003284	3	4	112	1	0	0	0	0	1	0	0	0	13533	652	23	4	1883	4	RNF10	12	121003284	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	6644714	121003284	12848611	54	107332											
NCOR2	9612	broad.mit.edu	37	chr12	124882555	124882555	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacctcaccagaggcctcAccacagcccctggctcaagg	9	17	3	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124882555	G	G	124882555	1	3	112	0	1	0	0	0	0	0	0	0	10331	174	6	5		5	NCOR2	12	124882555	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08	3879271	124882555	8969340	55	107333											
COL4A1	1282	broad.mit.edu	37	chr13	110827141	110827141	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactttacatttgtccatggGcatgcatctgtaggcatgtt	9	8	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110827141	A	A	110827141	1	1	112	0	1	0	0	0	0	0	0	0	3721	1218	42	4		4	COL4A1	13	110827141	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08		110827141	4342737	56	107334											
C14orf106	55320	broad.mit.edu	37	chr14	45706936	45706936	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaactacctaatcaagtaTaaaacaaagaacatatttcc	3	9	1	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45706936	A	A	45706936	1	1	112	0	1	0	0	0	0	0	0	0	1751	1421	49	5		5	C14orf106	14	45706936	Intron	SNP	T	TCGA-44-2666-01A-01W-0928-08		45706936	61642604	57	107335											
SYNE2	23224	broad.mit.edu	37	chr14	64518664	64518664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctccaggctaccaagcatgGattttctgttttaaaggggc	10	10	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64518664	T	T	64518664	3	4	112	1	0	0	0	0	1	0	0	0	15565	1174	41	3	8219	3	SYNE2	14	64518664	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	18811728	64518664	42830876	58	107336											
MTMR10	54893	broad.mit.edu	37	chr15	31233830	31233830	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgtccccgaggtgtcgGtgtggtgagggccgctggcg	20	11	0	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31233830	A	A	31233830	3	1	112	1	0	0	0	0	1	0	0	0	10033	1261	44	4	160	4	MTMR10	15	31233830	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08		31233830	71297562	59	107337											
TRPM1	4308	broad.mit.edu	37	chr15	31294527	31294527	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggaatagacgaagcttctgGacttcattgttttacaagca	10	7	2	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31294527	C	C	31294527	3	2	112	1	0	0	0	0	1	0	0	0	16710	1174	41	4	505	4	TRPM1	15	31294527	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	60697	31294527	71236865	60	107338											
RYR3	6263	broad.mit.edu	37	chr15	34117767	34117767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgctttcccagcgtgcGtagccctgaaccttgtttct	8	13	2	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34117767	T	T	34117767	1	4	112	0	1	0	0	0	0	0	0	0	13881	1160	40	3		3	RYR3	15	34117767	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	2823240	34117767	68413625	61	107339											
LRRC57	255252	broad.mit.edu	37	chr15	42840384	42840384	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggtaggctttcgatcttgTtgttggacaagtcgatggtc	14	7	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42840384	C	C	42840384	3	2	112	1	0	0	0	0	1	0	0	0	9100	1725	60	5	592	5	LRRC57	15	42840384	Missense_Mutation	SNP	T	TCGA-44-2666-01A-01W-0928-08	8722617	42840384	59691008	62	107340											
ETFA	2108	broad.mit.edu	37	chr15	76551755	76551755	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctaaggagaccttggcttgGatggagtgggagtgtaagaa	16	5	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76551755	A	A	76551755	1	1	112	0	1	0	0	0	0	0	0	0	5311	1189	41	4		4	ETFA	15	76551755	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	33711371	76551755	25979637	63	107341											
UBN1	29855	broad.mit.edu	37	chr16	4920909	4920909	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcggatgaggaagaagatGaagaaaaagggggcaggagg	19	2	0	5			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4920909	T	T	4920909	4	4	112	1	0	0	0	0	0	1	0	0	17018	1291	45	3	1533	3	UBN1	16	4920909	Nonsense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08		4920909	85433844	64	107342											
PRSS36	146547	broad.mit.edu	37	chr16	31151520	31151520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactctgtctcaaaaaaaaaAaaaaaaaaaaattccaattc	2	7	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31151520	G	G	31151520	1	3	112	0	1	0	0	0	0	0	0	0	12731	29	1	5		5	PRSS36	16	31151520	Intron	SNP	A	TCGA-44-2666-01A-01W-0928-08	26230611	31151520	59203233	65	107343											
CCL2	6347	broad.mit.edu	37	chr17	32583777	32583777	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggagatctgtgctgaCcccaagcagaagtgggttca	13	10	2	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32583777	T	T	32583777	2	4	112	1	0	0	0	0	0	0	0	1	2919	506	18	4		4	CCL2	17	32583777	Silent	SNP	C	TCGA-44-2666-01A-01W-0928-08		32583777	48611433	66	107344											
KRT35	3886	broad.mit.edu	37	chr17	39633999	39633999	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcatctctctgtgaggGcaagagttgtgtagggagga	15	6	2	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39633999	T	T	39633999	1	4	112	0	1	0	0	0	0	0	0	0	8543	1218	42	3		3	KRT35	17	39633999	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	7050222	39633999	41561211	67	107345											
COASY	80347	broad.mit.edu	37	chr17	40717061	40717061	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcagccgggtgtttgggaAtaaggtaaacaataacttcc	12	7	0	0	rs145251799		TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40717061	G	G	40717061	3	3	112	1	0	0	0	0	1	0	0	0	3684	101	4	5	1407	5	COASY	17	40717061	Missense_Mutation	SNP	A	TCGA-44-2666-01A-01W-0928-08	1083062	40717061	40478149	68	107346											
TOM1L1	10040	broad.mit.edu	37	chr17	53014371	53014371	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaattcttccttaaaatGcatccaaataggatcctccc	6	11	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53014371	C	C	53014371	1	2	112	0	1	0	0	0	0	0	0	0	16475	1334	46	4		4	TOM1L1	17	53014371	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	12297310	53014371	28180839	69	107347											
YPEL2	388403	broad.mit.edu	37	chr17	57474565	57474565	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactgattggacagcatctAcccaacccagtgtccacgtg	10	13	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57474565	G	G	57474565	1	3	112	0	1	0	0	0	0	0	0	0	17617	406	14	5		5	YPEL2	17	57474565	3'UTR	SNP	A	TCGA-44-2666-01A-01W-0928-08	4460194	57474565	23720645	70	107348											
EPB41L3	23136	broad.mit.edu	37	chr18	5416055	5416055	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggttggtttcagaaaggTtggggaaagagaggtatcca	17	3	1	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5416055	C	C	5416055	3	2	112	1	0	0	0	0	1	0	0	0	5196	1725	60	5	1474	5	EPB41L3	18	5416055	Missense_Mutation	SNP	T	TCGA-44-2666-01A-01W-0928-08		5416055	72661193	71	107349											
WDR7	23335	broad.mit.edu	37	chr18	54339839	54339839	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtacttttaacagatgatggGgccacgatcgtaacaggatg	12	7	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54339839	C	C	54339839	2	2	112	1	0	0	0	0	0	0	0	1	17447	1219	43	4		4	WDR7	18	54339839	Silent	SNP	G	TCGA-44-2666-01A-01W-0928-08	48923784	54339839	23737409	72	107350											
C3	718	broad.mit.edu	37	chr19	6710828	6710828	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctcgcacctggcgtcccGccttcaacagcctgcccttg	9	19	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6710828	A	A	6710828	3	1	112	1	0	0	0	0	1	0	0	0	2226	1087	38	4	3599	4	C3	19	6710828	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08		6710828	52418155	73	107351											
KIAA1543	57662	broad.mit.edu	37	chr19	7675543	7675543	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccgaggcgggcatctGgggccaggggtcccgtctgc	19	13	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7675543	A	A	7675543	1	1	112	0	1	0	0	0	0	0	0	0	8313	1363	47	4		4	KIAA1543	19	7675543	Intron	SNP	G	TCGA-44-2666-01A-01W-0928-08	964715	7675543	51453440	74	107352											
MUC16	94025	broad.mit.edu	37	chr19	9047069	9047069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccaggactggtgatgGctactgggagtgtggtgtct	17	8	1	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9047069	A	A	9047069	3	1	112	1	0	0	0	0	1	0	0	0	10067	1203	42	4	9281	4	MUC16	19	9047069	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	1371526	9047069	50081914	75	107353											
DDX49	54555	broad.mit.edu	37	chr19	19032540	19032540	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagggctgaaagactgcaTcatcgtcggtggcatgggta	14	8	2	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19032540	C	C	19032540	3	2	112	1	0	0	0	0	1	0	0	0	4399	1435	50	5	318	5	DDX49	19	19032540	Missense_Mutation	SNP	T	TCGA-44-2666-01A-01W-0928-08	9985471	19032540	40096443	76	107354											
TM6SF2	53345	broad.mit.edu	37	chr19	19379455	19379455	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatgttggcggtgcagCgggttagcgcccggggctgg	18	11	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19379455	T	T	19379455	3	4	112	1	0	0	0	0	1	0	0	0	16096	768	27	4	560	4	TM6SF2	19	19379455	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	346915	19379455	39749528	77	107355											
ZNF536	9745	broad.mit.edu	37	chr19	30936168	30936168	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaggagaagcgggagtacGtgttagtgggagcagatggc	18	4	0	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30936168	A	A	30936168	3	1	112	1	0	0	0	0	1	0	0	0	18101	1145	40	4	1701	4	ZNF536	19	30936168	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	11556713	30936168	28192815	78	107356											
ZNF573	126231	broad.mit.edu	37	chr19	38294292	38294292	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaacgcctttagtcacaCgtcacatcttgttagacgtg	10	10	3	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38294292	T	T	38294292	1	4	112	0	1	0	0	0	0	0	0	0	18132	551	19	4		4	ZNF573	19	38294292	Intron	SNP	C	TCGA-44-2666-01A-01W-0928-08	7358124	38294292	20834691	79	107357											
NUCB1	4924	broad.mit.edu	37	chr19	49409050	49409050	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggactttgtcagccaccAcgtccgcaccaagctggatg	11	14	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49409050	C	C	49409050	3	2	112	1	0	0	0	0	1	0	0	0	10813	159	6	5	294	5	NUCB1	19	49409050	Missense_Mutation	SNP	A	TCGA-44-2666-01A-01W-0928-08	11114758	49409050	9719933	80	107358											
NAPSA	9476	broad.mit.edu	37	chr19	50864307	50864307	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgggaaaaccgaggcccaAtatcccatcaaaatgggcaa	9	10	1	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50864307	G	G	50864307	2	3	112	1	0	0	0	0	0	0	0	1	10260	98	4	5		5	NAPSA	19	50864307	Silent	SNP	A	TCGA-44-2666-01A-01W-0928-08	1455257	50864307	8264676	81	107359											
LAIR2	3904	broad.mit.edu	37	chr19	55019211	55019211	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttggggttcaaacattccGcctggagagggaggatagag	17	6	1	2			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55019211	A	A	55019211	3	1	112	1	0	0	0	0	1	0	0	0	8675	1087	38	4	186	4	LAIR2	19	55019211	Missense_Mutation	SNP	G	TCGA-44-2666-01A-01W-0928-08	4154904	55019211	4109772	82	107360											
TASP1	55617	broad.mit.edu	37	chr20	13539765	13539765	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagctaaactgaatcctaTaaaataaaaataaaaaacat	3	6	0	1			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13539765	A	A	13539765	1	1	112	0	1	0	0	0	0	0	0	0	15708	1421	49	5		5	TASP1	20	13539765	Intron	SNP	T	TCGA-44-2666-01A-01W-0928-08		13539765	49485755	83	107361											
KIAA0406	9675	broad.mit.edu	37	chr20	36640637	36640637	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcagcccctgtaaccagttCattaaggatcatggcagctt	9	11	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36640637	T	T	36640637	3	4	112	1	0	0	0	0	1	0	0	0	8243	835	29	4	1715	4	KIAA0406	20	36640637	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08	23100872	36640637	26384883	84	107362											
MMP9	4318	broad.mit.edu	37	chr20	44642446	44642446	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctctggttagttaccTactttccctcccccgcccgg	6	17	2	0			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44642446	G	G	44642446	1	3	112	0	1	0	0	0	0	0	0	0	9763	1537	53	5		5	MMP9	20	44642446	Intron	SNP	T	TCGA-44-2666-01A-01W-0928-08	8001809	44642446	18383074	85	107363											
ADARB1	104	broad.mit.edu	37	chr21	46604861	46604861	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcagatagacacccaaatCgtaaagcaagaggacagcta	9	10	0	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46604861	T	T	46604861	3	4	112	1	0	0	0	0	1	0	0	0	282	884	31	4	1566	4	ADARB1	21	46604861	Missense_Mutation	SNP	C	TCGA-44-2666-01A-01W-0928-08		46604861	1525034	86	107364											
ARSH	347527	broad.mit.edu	37	chrX	2933387	2933387	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcagccaatgaaagaggaGaaagtagcttccctcatgct	10	10	1	3			TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2933387	A	A	2933387	2	1	112	1	0	0	0	0	0	0	0	1	997	933	33	4		4	ARSH	23	2933387	Silent	SNP	G	TCGA-44-2666-01A-01W-0928-08		2933387	152337173	87	107365											
TSPYL2	64061	broad.mit.edu	37	chrX	53117128	53117129	+	3'UTR	INS	-	C	C													gaaaaccggataagggttttINSccccttttggggatcacctc							TCGA-44-2666-01A-01W-0928-08	TCGA-44-2666-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53117129	C	C	53117128	6	5	112	0	1	1	1	0	0	0	0	0	16785	1798	62	0		0	TSPYL2	23	53117128	3'UTR	INS	-	TCGA-44-2666-01A-01W-0928-08	50183741	53117128	102153432	88	107366											
AJAP1	55966	broad.mit.edu	37	chr1	4829866	4829866	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccggcccccctcgcctccTgaacctggtttcacgggtgc	10	19	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4829866	A	A	4829866	1	1	113	0	1	0	0	0	0	0	0	0	438	1595	55	5		5	AJAP1	1	4829866	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08		4829866	244420755	1	107367											
PAX7	5081	broad.mit.edu	37	chr1	18960982	18960982	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaagattctttgccgctacCaggagaccgggtccatccgg	11	14	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18960982	G	G	18960982	3	3	113	1	0	0	0	0	1	0	0	0	11578	595	21	4	277	4	PAX7	1	18960982	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	14131116	18960982	230289639	2	107368											
MYOM3	127294	broad.mit.edu	37	chr1	24433662	24433662	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtcattgccgaagcccacCcgcttctgccctcgctcctc	7	20	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24433662	T	T	24433662	2	4	113	1	0	0	0	0	0	0	0	1	10187	610	22	4		4	MYOM3	1	24433662	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	5472680	24433662	224816959	3	107369											
WASF2	10163	broad.mit.edu	37	chr1	27734858	27734858	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacctagtggcaaagagacaGaagggtgaggaaggcgtgtc	16	6	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27734858	C	C	27734858	1	2	113	0	1	0	0	0	0	0	0	0	17380	957	33	4		4	WASF2	1	27734858	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3301196	27734858	221515763	4	107370											
MATN1	4146	broad.mit.edu	37	chr1	31194492	31194492	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccacgtccagcgactcgatGacctgggacaggaatacctt	10	14	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31194492	T	T	31194492	2	4	113	1	0	0	0	0	0	0	0	1	9425	1277	45	3		3	MATN1	1	31194492	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	3459634	31194492	218056129	5	107371											
ZMYM6	9204	broad.mit.edu	37	chr1	35480537	35480537	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaaataagcagagccagtTaaaaaaaaatctctttcagc	5	8	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35480537	C	C	35480537	1	2	113	0	1	0	0	0	0	0	0	0	17830	1769	61	5		5	ZMYM6	1	35480537	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	4286045	35480537	213770084	6	107372											
POU3F1	5453	broad.mit.edu	37	chr1	38511276	38511276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagacgcgcaccacctcCttctccagctgcaggctgtc	8	18	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38511276	A	A	38511276	3	1	113	1	0	0	0	0	1	0	0	0	12370	680	24	2	219	2	POU3F1	1	38511276	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3030739	38511276	210739345	7	107373											
HEYL	26508	broad.mit.edu	37	chr1	40098205	40098205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacagagccgggatttgaaCccaagcagttagcttcatgg	12	9	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40098205	A	A	40098205	1	1	113	0	1	0	0	0	0	0	0	0	7147	522	18	3		3	HEYL	1	40098205	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1586929	40098205	209152416	8	107374											
BEST4	266675	broad.mit.edu	37	chr1	45253101	45253101	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgcagtaccgggccacctGagcatacacgtacctctgct	10	14	1	1	rs138830699		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45253101	A	A	45253101	4	1	113	1	0	0	0	0	0	1	0	0	1412	1299	45	4	1263	4	BEST4	1	45253101	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	5154896	45253101	203997520	9	107375											
AGBL4	84871	broad.mit.edu	37	chr1	49119143	49119143	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctagggaaagagaagagccCggtttaacaacaaagcattt	10	8	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49119143	T	T	49119143	1	4	113	0	1	0	0	0	0	0	0	0	377	667	23	4		4	AGBL4	1	49119143	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3866042	49119143	200131478	10	107376											
DMRTA2	63950	broad.mit.edu	37	chr1	50885024	50885024	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcaagatatccagcggcgtCcgctgccgtggacccgagcc	13	15	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50885024	T	T	50885024	2	4	113	1	0	0	0	0	0	0	0	1	4629	842	30	4		4	DMRTA2	1	50885024	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	1765881	50885024	198365597	11	107377											
C1orf168	199920	broad.mit.edu	37	chr1	57252989	57252989	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agataatgtggagagtggaaGcttgcctgtgcctgaaacat	13	6	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57252989	A	A	57252989	1	1	113	0	1	0	0	0	0	0	0	0	2032	986	34	4		4	C1orf168	1	57252989	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	6367965	57252989	191997632	12	107378											
C1orf173	127254	broad.mit.edu	37	chr1	75055428	75055428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcagaaacatgtttcccgGacttctcagataaaccctct	6	13	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75055428	T	T	75055428	3	4	113	1	0	0	0	0	1	0	0	0	2034	1174	41	3	2541	3	C1orf173	1	75055428	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	17802439	75055428	174195193	13	107379											
C1orf173	127254	broad.mit.edu	37	chr1	75055641	75055641	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagttcctgagaagatgacCttctggcactttcatctgtg	9	10	4	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75055641	G	G	75055641	3	3	113	1	0	0	0	0	1	0	0	0	2034	681	24	4	2754	4	C1orf173	1	75055641	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	213	75055641	174194980	14	107380											
SYDE2	84144	broad.mit.edu	37	chr1	85648858	85648858	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataattcccaattcagtactAtttgtagcagccaggatccc	6	11	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85648858	G	G	85648858	2	3	113	1	0	0	0	0	0	0	0	1	15555	446	16	5		5	SYDE2	1	85648858	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	10593217	85648858	163601763	15	107381											
COL24A1	255631	broad.mit.edu	37	chr1	86375647	86375647	+	Frame_Shift_Del	DEL	C	-	-													tcttaccataacacctttttCtccctgcggacctagtgggc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86375647	-	-	86375647	7	5	113	1	0	1	0	1	0	0	0	0	3715	922	32	0	2628	0	COL24A1	1	86375647	Frame_Shift_Del	DEL	C	TCGA-44-2668-01A-01W-0928-08	726789	86375647	162874974	16	107382											
COL24A1	255631	broad.mit.edu	37	chr1	86488678	86488678	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtccaattggtcccacagGgccaacactgccctggaaaa	10	13	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86488678	A	A	86488678	3	1	113	1	0	0	0	0	1	0	0	0	3715	1232	43	4	3266	4	COL24A1	1	86488678	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	113031	86488678	162761943	17	107383											
LRRC8C	84230	broad.mit.edu	37	chr1	90179864	90179864	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacataatgatggcaccaagCtggtgatgctcaacaactta	8	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90179864	T	T	90179864	2	4	113	1	0	0	0	0	0	0	0	1	9110	796	28	4		4	LRRC8C	1	90179864	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	3691186	90179864	159070757	18	107384											
GFI1	2672	broad.mit.edu	37	chr1	92948493	92948493	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgttcgcagacgctgccttCgcagctgtctggggatgcgg	15	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92948493	T	T	92948493	3	4	113	1	0	0	0	0	1	0	0	0	6403	893	31	4	1062	4	GFI1	1	92948493	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2768629	92948493	156302128	19	107385											
LPPR4	9890	broad.mit.edu	37	chr1	99772756	99772756	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagagggaaaagcacaatGcaagaacctaactaacgtga	11	7	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99772756	T	T	99772756	1	4	113	0	1	0	0	0	0	0	0	0	9014	1334	46	3		3	LPPR4	1	99772756	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	6824263	99772756	149477865	20	107386											
OLFM3	118427	broad.mit.edu	37	chr1	102296451	102296451	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcaatcactaagaaataGcaaaaatgccgttaacataa	6	7	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102296451	A	A	102296451	1	1	113	0	1	0	0	0	0	0	0	0	10949	986	34	4		4	OLFM3	1	102296451	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2523695	102296451	146954170	21	107387											
COL11A1	1301	broad.mit.edu	37	chr1	103462563	103462563	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacgtgatttatatatatgAgatgaccaaattaaggcatt	8	4	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103462563	T	T	103462563	1	4	113	0	1	0	0	0	0	0	0	0	3699	319	11	5		5	COL11A1	1	103462563	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1166112	103462563	145788058	22	107388											
NTNG1	22854	broad.mit.edu	37	chr1	107973450	107973450	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttgcgtgagctgtaaacAcaacactagagggcagcact	10	10	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107973450	C	C	107973450	3	2	113	1	0	0	0	0	1	0	0	0	10799	159	6	5	1318	5	NTNG1	1	107973450	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	4510887	107973450	141277171	23	107389											
AKNAD1	254268	broad.mit.edu	37	chr1	109366318	109366318	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtatcagaatctgaaaaAgcccaagttgcatgaatgaa	8	8	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109366318	G	G	109366318	1	3	113	0	1	0	0	0	0	0	0	0	464	87	3	5		5	AKNAD1	1	109366318	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1392868	109366318	139884303	24	107390											
CELSR2	1952	broad.mit.edu	37	chr1	109812142	109812142	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctggacaaacccgtcacGgtgcagttccgcctgctgga	12	15	1	0	rs150014940		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109812142	A	A	109812142	2	1	113	1	0	0	0	0	0	0	0	1	3252	1103	39	4		4	CELSR2	1	109812142	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	445824	109812142	139438479	25	107391											
SYPL2	284612	broad.mit.edu	37	chr1	110019410	110019410	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgcaggttgcaccggatCcaatatgagatgcccctctg	10	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110019410	A	A	110019410	2	1	113	1	0	0	0	0	0	0	0	1	15582	845	30	3		3	SYPL2	1	110019410	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	207268	110019410	139231211	26	107392											
GPR61	83873	broad.mit.edu	37	chr1	110086511	110086511	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaaagcagcagtggttctCctggctgtggggggacagtt	18	7	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110086511	A	A	110086511	2	1	113	1	0	0	0	0	0	0	0	1	6767	842	30	3		3	GPR61	1	110086511	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	67101	110086511	139164110	27	107393											
EPS8L3	79574	broad.mit.edu	37	chr1	110300684	110300684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggttcagcacttcctgGgccccaaacaacccatggcc	8	16	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110300684	T	T	110300684	1	4	113	0	1	0	0	0	0	0	0	0	5239	1247	43	2		2	EPS8L3	1	110300684	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	214173	110300684	138949937	28	107394											
RSBN1	54665	broad.mit.edu	37	chr1	114310969	114310969	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacttcgcggggttcactGgtccgaggtaggtactggag	16	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114310969	A	A	114310969	2	1	113	1	0	0	0	0	0	0	0	1	13807	1335	47	4		4	RSBN1	1	114310969	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	4010285	114310969	134939652	29	107395											
CSDE1	7812	broad.mit.edu	37	chr1	115267878	115267878	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactttttctgcactgacttTgttgcctttgcctttggaca	7	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115267878	C	C	115267878	3	2	113	1	0	0	0	0	1	0	0	0	3963	1821	63	5	703	5	CSDE1	1	115267878	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	956909	115267878	133982743	30	107396											
SPAG17	200162	broad.mit.edu	37	chr1	118609283	118609283	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaccccctagcttagggtAaggaactaacacctaagtaa	8	10	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118609283	G	G	118609283	1	3	113	0	1	0	0	0	0	0	0	0	15095	377	13	5		5	SPAG17	1	118609283	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	3341405	118609283	130641338	31	107397											
PDE4DIP	9659	broad.mit.edu	37	chr1	144881364	144881364	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaccacgttatgtcggtaTagaacatacagaacttataa	6	7	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144881364	C	C	144881364	1	2	113	0	1	0	0	0	0	0	0	0	11737	1421	49	5		5	PDE4DIP	1	144881364	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	26272081	144881364	104369257	32	107398											
NBPF10	100132406	broad.mit.edu	37	chr1	145273651	145273651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaagagaaagaaaaaggaCcaaatactttgactgcttaa	8	5	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145273651	A	A	145273651	1	1	113	0	1	0	0	0	0	0	0	0	10287	522	18	3		3	NBPF10	1	145273651	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	392287	145273651	103976970	33	107399											
NBPF10	100132406	broad.mit.edu	37	chr1	145931802	145931802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggtcatgagtgaatggGcccagccttaatgcatgaat	12	7	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145931802	T	T	145931802	1	4	113	0	1	0	0	0	0	0	0	0	10287	1218	42	3		3	NBPF10	1	145931802	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	658151	145931802	103318819	34	107400											
FMO5	2330	broad.mit.edu	37	chr1	146675291	146675291	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgctccacctccgggtacAagacgtttatcccttgtaag	9	12	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146675291	C	C	146675291	1	2	113	0	1	0	0	0	0	0	0	0	6016	145	5	5		5	FMO5	1	146675291	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	743489	146675291	102575330	35	107401											
SEMA6C	10500	broad.mit.edu	37	chr1	151111849	151111849	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaccagttggacagagacTgggggcagagtaatcctctc	14	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151111849	A	A	151111849	1	1	113	0	1	0	0	0	0	0	0	0	14154	1595	55	5		5	SEMA6C	1	151111849	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	4436558	151111849	98138772	36	107402											
FLG	2312	broad.mit.edu	37	chr1	152286758	152286758	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctttctcttcaagtctttCacttagcctcttcctattgt	3	12	6	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152286758	A	A	152286758	4	1	113	1	0	0	0	0	0	1	0	0	5979	835	29	3	11585	3	FLG	1	152286758	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1174909	152286758	96963863	37	107403											
LCE3E	353145	broad.mit.edu	37	chr1	152538599	152538599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggaagctggaggcagaCactgtactgggttctttggg	16	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152538599	A	A	152538599	3	1	113	1	0	0	0	0	1	0	0	0	8745	478	17	3	196	3	LCE3E	1	152538599	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	251841	152538599	96712022	38	107404											
ATP8B2	57198	broad.mit.edu	37	chr1	154319215	154319215	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctcttcgacatgtttccCaaccagttccggtttgtggg	12	11	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154319215	T	T	154319215	2	4	113	1	0	0	0	0	0	0	0	1	1199	581	21	4		4	ATP8B2	1	154319215	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	1780616	154319215	94931406	39	107405											
INSRR	3645	broad.mit.edu	37	chr1	156815066	156815066	+	Frame_Shift_Del	DEL	C	-	-													cagccggaggggcccagctgCccggcggtgccgccctgagt							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156815066	-	-	156815066	7	5	113	1	0	1	0	1	0	0	0	0	7844	739	26	0	1697	0	INSRR	1	156815066	Frame_Shift_Del	DEL	C	TCGA-44-2668-01A-01W-0928-08	2495851	156815066	92435555	40	107406											
CD1E	913	broad.mit.edu	37	chr1	158325684	158325684	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtctgcagcttgtgtgccaTgtctcaggattctacccaaa	9	12	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158325684	C	C	158325684	2	2	113	1	0	0	0	0	0	0	0	1	3008	1461	51	5		5	CD1E	1	158325684	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	1510618	158325684	90924937	41	107407											
OR10X1	128367	broad.mit.edu	37	chr1	158548787	158548787	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttattcctcaggctgaatatGatggggctgaggaagggggt	16	5	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158548787	A	A	158548787	2	1	113	1	0	0	0	0	0	0	0	1	11016	1280	45	4		4	OR10X1	1	158548787	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	223103	158548787	90701834	42	107408											
SPTA1	6708	broad.mit.edu	37	chr1	158583603	158583603	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaattgagtcctctcagGcaggaccggaactctttgtg	11	9	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158583603	T	T	158583603	4	4	113	1	0	0	0	0	0	1	0	0	15234	1195	42	3	374	3	SPTA1	1	158583603	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	34816	158583603	90667018	43	107409											
SPTA1	6708	broad.mit.edu	37	chr1	158596837	158596837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatatttataatgtgcaGggctggaaatgtgaatccat	9	4	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158596837	T	T	158596837	1	4	113	0	1	0	0	0	0	0	0	0	15234	1015	35	2		2	SPTA1	1	158596837	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	13234	158596837	90653784	44	107410											
IFI16	3428	broad.mit.edu	37	chr1	158988299	158988299	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctagaggtcaatgaagaatCtactgtatctgaagctggtc	10	8	3	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158988299	A	A	158988299	3	1	113	1	0	0	0	0	1	0	0	0	7581	913	32	3	844	3	IFI16	1	158988299	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	391462	158988299	90262322	45	107411											
ATP1A2	477	broad.mit.edu	37	chr1	160099833	160099833	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttccttaccagctgctgctCtatgccgcgctaccaagaca	7	15	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160099833	G	G	160099833	1	3	113	0	1	0	0	0	0	0	0	0	1133	928	32	4		4	ATP1A2	1	160099833	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1111534	160099833	89150788	46	107412											
SLAMF7	57823	broad.mit.edu	37	chr1	160721246	160721246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcacactaatgtgagtcCcttctcatctttcctgagaa	5	14	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160721246	A	A	160721246	1	1	113	0	1	0	0	0	0	0	0	0	14482	638	22	2		2	SLAMF7	1	160721246	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	621413	160721246	88529375	47	107413											
ADAMTS4	9507	broad.mit.edu	37	chr1	161165312	161165312	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgcagggggaccagggctCctcaggatccacatgagcca	13	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161165312	A	A	161165312	4	1	113	1	0	0	0	0	0	1	0	0	268	864	30	3	1333	3	ADAMTS4	1	161165312	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	444066	161165312	88085309	48	107414											
C1orf226	400793	broad.mit.edu	37	chr1	162353098	162353098	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgtcctcagcagtctGgagtatgggacagagccatc	12	12	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162353098	A	A	162353098	2	1	113	1	0	0	0	0	0	0	0	1	2054	1335	47	4		4	C1orf226	1	162353098	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1187786	162353098	86897523	49	107415											
DUSP27	92235	broad.mit.edu	37	chr1	167088532	167088532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaggctgggaatcaccCacattctgaatgctgcgcat	11	10	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167088532	A	A	167088532	3	1	113	1	0	0	0	0	1	0	0	0	4864	594	21	2	498	2	DUSP27	1	167088532	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4735434	167088532	82162089	50	107416											
C1orf105	92346	broad.mit.edu	37	chr1	172437600	172437600	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcatccagaaagcattcacTacagactgcccattctgggc	8	13	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172437600	A	A	172437600	3	1	113	1	0	0	0	0	1	0	0	0	1999	1522	53	5	444	5	C1orf105	1	172437600	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	5349068	172437600	76813021	51	107417											
C1orf105	92346	broad.mit.edu	37	chr1	172437623	172437623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactgcccattctgggcccCaggacagctgtcttccacgg	11	15	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172437623	A	A	172437623	2	1	113	1	0	0	0	0	0	0	0	1	1999	581	21	2		2	C1orf105	1	172437623	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	23	172437623	76812998	52	107418											
FASLG	356	broad.mit.edu	37	chr1	172628515	172628515	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccactaccacctccgccGccgccgccaccactgcctcc	5	26	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172628515	T	T	172628515	2	4	113	1	0	0	0	0	0	0	0	1	5739	1074	38	3		3	FASLG	1	172628515	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	190892	172628515	76622106	53	107419											
TNN	63923	broad.mit.edu	37	chr1	175037033	175037033	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaggagaccggctcacagGagcagcagcattggaagagg	17	8	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175037033	T	T	175037033	1	4	113	0	1	0	0	0	0	0	0	0	16446	1189	41	3		3	TNN	1	175037033	5'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	2408518	175037033	74213588	54	107420											
RFWD2	64326	broad.mit.edu	37	chr1	175958396	175958396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaagaaaaagtacatataCtccaatattatagtttacat	3	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175958396	A	A	175958396	1	1	113	0	1	0	0	0	0	0	0	0	13368	580	20	3		3	RFWD2	1	175958396	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	921363	175958396	73292225	55	107421											
PAPPA2	60676	broad.mit.edu	37	chr1	176681212	176681212	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtaaatggtgcatttggatGacttgtcagaaaattttctt	9	4	2	2	rs142184423	by1000genomes	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176681212	T	T	176681212	1	4	113	0	1	0	0	0	0	0	0	0	11527	1305	45	3		3	PAPPA2	1	176681212	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	722816	176681212	72569409	56	107422											
ASTN1	460	broad.mit.edu	37	chr1	176913182	176913182	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagggtagaccttcatttctGagtgttcaggtgaacctgac	12	8	3	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176913182	T	T	176913182	1	4	113	0	1	0	0	0	0	0	0	0	1068	1305	45	3		3	ASTN1	1	176913182	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	231970	176913182	72337439	57	107423											
FAM5B	57795	broad.mit.edu	37	chr1	177250580	177250580	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctggccaacaatgaggtGggcaggatccagtcctccct	12	12	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177250580	T	T	177250580	2	4	113	1	0	0	0	0	0	0	0	1	5644	1335	47	2		2	FAM5B	1	177250580	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	337398	177250580	72000041	58	107424											
NPHS2	7827	broad.mit.edu	37	chr1	179520370	179520370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggtttggaaggacttgGgaaggggaggcttccctgag	17	6	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179520370	T	T	179520370	3	4	113	1	0	0	0	0	1	0	0	0	10678	1232	43	2	65	2	NPHS2	1	179520370	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2269790	179520370	69730251	59	107425											
TDRD5	163589	broad.mit.edu	37	chr1	179621246	179621246	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaggacattgtcttgacaGaactgggttatccttcccag	10	10	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179621246	A	A	179621246	3	1	113	1	0	0	0	0	1	0	0	0	15855	943	33	4	2120	4	TDRD5	1	179621246	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	100876	179621246	69629375	60	107426											
FAM163A	148753	broad.mit.edu	37	chr1	179782940	179782940	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcaagaagagcggaacCgaggttgcagacgaggagga	17	7	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179782940	A	A	179782940	2	1	113	1	0	0	0	0	0	0	0	1	5522	639	23	1		1	FAM163A	1	179782940	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	161694	179782940	69467681	61	107427											
GLT25D2	23127	broad.mit.edu	37	chr1	183933016	183933016	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaacgagagccatcccctCtgctcctgggtcactcactc	9	16	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183933016	G	G	183933016	1	3	113	0	1	0	0	0	0	0	0	0	6531	928	32	4		4	GLT25D2	1	183933016	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4150076	183933016	65317605	62	107428											
KCNT2	343450	broad.mit.edu	37	chr1	196395118	196395118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaatcaccacataataatCctattcaaaacaaaatgggc	3	10	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196395118	A	A	196395118	3	1	113	1	0	0	0	0	1	0	0	0	8162	869	30	3	2494	3	KCNT2	1	196395118	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	12462102	196395118	52855503	63	107429											
CFHR5	81494	broad.mit.edu	37	chr1	196964820	196964820	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacttataagaccatttaaGcattatttatggtttcttta	4	5	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196964820	A	A	196964820	1	1	113	0	1	0	0	0	0	0	0	0	3318	986	34	4		4	CFHR5	1	196964820	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	569702	196964820	52285801	64	107430											
ATP6V1G3	127124	broad.mit.edu	37	chr1	198509591	198509591	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtctcacagggagtacaGtaaaccaaagtttgaaacaa	9	7	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198509591	C	C	198509591	1	2	113	0	1	0	0	0	0	0	0	0	1192	1044	36	4		4	ATP6V1G3	1	198509591	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1544771	198509591	50741030	65	107431											
PTPRC	5788	broad.mit.edu	37	chr1	198668802	198668802	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccgccgccaatgcaaaactCaaccctaccccaggcagcaa	6	18	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198668802	T	T	198668802	2	4	113	1	0	0	0	0	0	0	0	1	12905	813	29	4		4	PTPRC	1	198668802	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	159211	198668802	50581819	66	107432											
TNNT2	7139	broad.mit.edu	37	chr1	201333393	201333393	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggagctgggagcatggggGgcctccatgggcctgggcta	19	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201333393	C	C	201333393	1	2	113	0	1	0	0	0	0	0	0	0	16454	1247	43	4		4	TNNT2	1	201333393	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2664591	201333393	47917228	67	107433											
SYT2	127833	broad.mit.edu	37	chr1	202571229	202571229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggccagagcgactcacGcacctccaggggtgctatgg	16	12	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202571229	T	T	202571229	1	4	113	0	1	0	0	0	0	0	0	0	15593	1102	38	3		3	SYT2	1	202571229	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1237836	202571229	46679392	68	107434											
CYB5R1	51706	broad.mit.edu	37	chr1	202933872	202933872	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaataaagtcaatacagcGaacttagaaaacaaatgcag	7	6	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202933872	T	T	202933872	1	4	113	0	1	0	0	0	0	0	0	0	4159	1073	37	3		3	CYB5R1	1	202933872	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	362643	202933872	46316749	69	107435											
LRRN2	10446	broad.mit.edu	37	chr1	204588984	204588984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtggtagcctcgcggtagGacgagcggggcgtataccag	17	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204588984	T	T	204588984	3	4	113	1	0	0	0	0	1	0	0	0	9122	1174	41	3	2008	3	LRRN2	1	204588984	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1655112	204588984	44661637	70	107436											
DSTYK	25778	broad.mit.edu	37	chr1	205116682	205116682	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaagagaaaggtctttGctttcaagtagaatcatcta	9	5	4	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205116682	C	C	205116682	1	2	113	0	1	0	0	0	0	0	0	0	4825	1334	46	4		4	DSTYK	1	205116682	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	527698	205116682	44133939	71	107437											
DSTYK	25778	broad.mit.edu	37	chr1	205117243	205117243	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccctgctatggagtggccaGatgggatgacaggagacccg	16	10	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205117243	C	C	205117243	1	2	113	0	1	0	0	0	0	0	0	0	4825	957	33	4		4	DSTYK	1	205117243	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	561	205117243	44133378	72	107438											
LGTN	1939	broad.mit.edu	37	chr1	206785640	206785640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccctttcctccctcacCtgtccgaccccttgatggcc	7	20	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206785640	A	A	206785640	3	1	113	1	0	0	0	0	1	0	0	0	8832	695	24	2	1758	2	LGTN	1	206785640	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1668397	206785640	42464981	73	107439											
CR2	1380	broad.mit.edu	37	chr1	207644536	207644536	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accctgcaagctctatgtaaGagtttgtctcataggtgctt	9	9	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207644536	T	T	207644536	1	4	113	0	1	0	0	0	0	0	0	0	3874	957	33	3		3	CR2	1	207644536	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	858896	207644536	41606085	74	107440											
PTPN14	5784	broad.mit.edu	37	chr1	214705938	214705938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatcgaggacctgagggCtcagatcttagcaaatactg	11	9	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214705938	A	A	214705938	1	1	113	0	1	0	0	0	0	0	0	0	12889	812	28	3		3	PTPN14	1	214705938	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	7061402	214705938	34544683	75	107441											
USH2A	7399	broad.mit.edu	37	chr1	216062334	216062334	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattttctaggatgctgccAggtgaccaacatcattcttg	10	9	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216062334	T	T	216062334	3	4	113	1	0	0	0	0	1	0	0	0	17162	188	7	5	8079	5	USH2A	1	216062334	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	1356396	216062334	33188287	76	107442											
USH2A	7399	broad.mit.edu	37	chr1	216251604	216251604	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttaataatgactttattcCactttccattacaataggat	3	7	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216251604	G	G	216251604	3	3	113	1	0	0	0	0	1	0	0	0	17162	595	21	4	10393	4	USH2A	1	216251604	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	189270	216251604	32999017	77	107443											
USH2A	7399	broad.mit.edu	37	chr1	216251649	216251649	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaatagatccacttgtGtaaaggcaagactggtattt	9	8	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216251649	C	C	216251649	3	2	113	1	0	0	0	0	1	0	0	0	17162	1377	48	4	10438	4	USH2A	1	216251649	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	45	216251649	32998972	78	107444											
USH2A	7399	broad.mit.edu	37	chr1	216372980	216372980	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattcttaccatttagttccGctggtggagaccattctaca	8	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216372980	A	A	216372980	3	1	113	1	0	0	0	0	1	0	0	0	17162	1087	38	4	12046	4	USH2A	1	216372980	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	121331	216372980	32877641	79	107445											
USH2A	7399	broad.mit.edu	37	chr1	216595290	216595290	+	Frame_Shift_Del	DEL	C	-	-													aaaagcagctcttgtgatttCcaaaaataaaacttgcagaa							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216595290	-	-	216595290	7	5	113	1	0	1	0	1	0	0	0	0	17162	855	30	0	15517	0	USH2A	1	216595290	Frame_Shift_Del	DEL	C	TCGA-44-2668-01A-01W-0928-08	222310	216595290	32655331	80	107446											
LYPLAL1	127018	broad.mit.edu	37	chr1	219383918	219383918	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaatacatttagcatatAgaaatcatcaagatgtggca	8	6	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219383918	T	T	219383918	4	4	113	1	0	0	0	0	0	1	0	0	9206	412	15	5	420	5	LYPLAL1	1	219383918	Nonsense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2788628	219383918	29866703	81	107447											
IARS2	55699	broad.mit.edu	37	chr1	220311269	220311269	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgaaaaggatcaaagcAaagagcctccgtatggtgct	10	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220311269	G	G	220311269	3	3	113	1	0	0	0	0	1	0	0	0	7544	131	5	5	2125	5	IARS2	1	220311269	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	927351	220311269	28939352	82	107448											
MARK1	4139	broad.mit.edu	37	chr1	220825386	220825386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttctgtggcctctgctGtcccctcagcacgaccccgc	9	19	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220825386	T	T	220825386	3	4	113	1	0	0	0	0	1	0	0	0	9404	1377	48	3	1688	3	MARK1	1	220825386	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	514117	220825386	28425235	83	107449											
OBSCN	84033	broad.mit.edu	37	chr1	228480972	228480972	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtccagttggattctgtgTcttctctgtgccatccatgt	10	10	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228480972	A	A	228480972	1	1	113	0	1	0	0	0	0	0	0	0	10907	1682	58	5		5	OBSCN	1	228480972	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	7655586	228480972	20769649	84	107450											
OBSCN	84033	broad.mit.edu	37	chr1	228511036	228511036	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctatcccagccccagtGttcctgactgagttgcagaa	8	14	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228511036	T	T	228511036	2	4	113	1	0	0	0	0	0	0	0	1	10907	1364	48	3		3	OBSCN	1	228511036	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	30064	228511036	20739585	85	107451											
SIPA1L2	57568	broad.mit.edu	37	chr1	232626586	232626586	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcagaaacagacacaaattCacacacaaacatacaatctc	2	12	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232626586	T	T	232626586	1	4	113	0	1	0	0	0	0	0	0	0	14443	841	29	4		4	SIPA1L2	1	232626586	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4115550	232626586	16624035	86	107452											
PCNXL2	80003	broad.mit.edu	37	chr1	233394394	233394394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcgtcagactttacaCtggtcttctctgtgccaacc	8	14	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233394394	A	A	233394394	3	1	113	1	0	0	0	0	1	0	0	0	11686	565	20	3	5319	3	PCNXL2	1	233394394	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	767808	233394394	15856227	87	107453											
ERO1LB	56605	broad.mit.edu	37	chr1	236384244	236384244	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagagaataatatcttcaGggcagttcctaaaccctgag	8	9	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236384244	A	A	236384244	2	1	113	1	0	0	0	0	0	0	0	1	5282	991	35	4		4	ERO1LB	1	236384244	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	2989850	236384244	12866377	88	107454											
RYR2	6262	broad.mit.edu	37	chr1	237608843	237608843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactttttcttttgtaggcGtagttgtttgatacttcatt	8	5	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237608843	T	T	237608843	1	4	113	0	1	0	0	0	0	0	0	0	13880	1160	40	3		3	RYR2	1	237608843	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1224599	237608843	11641778	89	107455											
CHRM3	1131	broad.mit.edu	37	chr1	240072343	240072344	+	Missense_Mutation	DNP	GG	CT	CT													cttttggaatctgggctactGgctgtgctacatcaacagca							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	240072344	CT	CT	240072343	3	2	113	1	0	0	0	0	1	0	0	0	3409	1357	47	4	1594	4	CHRM3	1	240072343	Missense_Mutation	DNP	GG	TCGA-44-2668-01A-01W-0928-08	2463500	240072343	9178278	90	107456											
FMN2	56776	broad.mit.edu	37	chr1	240370500	240370500	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctccaaggcgaatatcagtCcagctcgacagccatcagcc	8	15	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240370500	A	A	240370500	2	1	113	1	0	0	0	0	0	0	0	1	6008	842	30	3		3	FMN2	1	240370500	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	298157	240370500	8880121	91	107457											
OR6F1	343169	broad.mit.edu	37	chr1	247875336	247875336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacggtgagatgcgaggagCacgtggagaaggctttgctc	16	9	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875336	A	A	247875336	3	1	113	1	0	0	0	0	1	0	0	0	11295	710	25	3	208	3	OR6F1	1	247875336	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	7504836	247875336	1375285	92	107458											
OR2L13	284521	broad.mit.edu	37	chr1	248138331	248138331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttccttcattgggtgtGgaattcagagtttcttcttt	8	7	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248138331	T	T	248138331	1	4	113	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248138331	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	262995	248138331	1112290	93	107459											
OR2L13	284521	broad.mit.edu	37	chr1	248138389	248138389	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaatgctgccactgacatCaatggcctgtgatcattatg	9	9	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248138389	A	A	248138389	1	1	113	0	1	0	0	0	0	0	0	0	11100	841	29	3		3	OR2L13	1	248138389	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	58	248138389	1112232	94	107460											
OR2L3	391192	broad.mit.edu	37	chr1	248224602	248224602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaccaccatctttctcGtgtttcccttcattgctatt	5	13	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248224602	T	T	248224602	3	4	113	1	0	0	0	0	1	0	0	0	11102	1145	40	3	621	3	OR2L3	1	248224602	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	86213	248224602	1026019	95	107461											
OR2M5	127059	broad.mit.edu	37	chr1	248308701	248308701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacccaagatggccttcaaCtacttgtctggcagcaagtc	9	12	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308701	A	A	248308701	3	1	113	1	0	0	0	0	1	0	0	0	11107	564	20	3	254	3	OR2M5	1	248308701	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	84099	248308701	941920	96	107462											
OR2T6	254879	broad.mit.edu	37	chr1	248551725	248551725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaccccaatcaaagataaGgtcttctctgccttttatac	4	13	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248551725	T	T	248551725	3	4	113	1	0	0	0	0	1	0	0	0	11123	991	35	2	818	2	OR2T6	1	248551725	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	243024	248551725	698896	97	107463											
OR2T34	127068	broad.mit.edu	37	chr1	248737350	248737350	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaggccttcctgcggccggCggcagaattcatcctgtgga	13	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248737350	G	G	248737350	3	3	113	1	0	0	0	0	1	0	0	0	11119	768	27	4	251	4	OR2T34	1	248737350	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	185625	248737350	513271	98	107464											
SH3BP5L	80851	broad.mit.edu	37	chr1	249107242	249107242	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtaggggcggctcttgccGatggccctccggagggtctt	16	11	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249107242	A	A	249107242	2	1	113	1	0	0	0	0	0	0	0	1	14361	1048	37	4		4	SH3BP5L	1	249107242	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	369892	249107242	143379	99	107465											
ROCK2	9475	broad.mit.edu	37	chr2	11484041	11484041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctccccctccccacgggcGgacgggcacggagggctggg	16	17	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11484041	A	A	11484041	1	1	113	0	1	0	0	0	0	0	0	0	13629	1131	39	4		4	ROCK2	2	11484041	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08		11484041	231715332	100	107466											
NBAS	51594	broad.mit.edu	37	chr2	15372540	15372540	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgcacatactgttctagTcttaccccttgtccacactg	6	13	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15372540	A	A	15372540	1	1	113	0	1	0	0	0	0	0	0	0	10280	1682	58	5		5	NBAS	2	15372540	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	3888499	15372540	227826833	101	107467											
GTF3C2	2976	broad.mit.edu	37	chr2	27551677	27551677	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaatgagccattttccttTgtaatgaagactgcaaaaga	7	6	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27551677	A	A	27551677	1	1	113	0	1	0	0	0	0	0	0	0	6938	1827	63	5		5	GTF3C2	2	27551677	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	12179137	27551677	215647696	102	107468											
EIF2AK2	5610	broad.mit.edu	37	chr2	37374158	37374158	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatattatacaactcaTgcactatctaaaaacaagta	2	7	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37374158	A	A	37374158	1	1	113	0	1	0	0	0	0	0	0	0	5037	1479	51	5		5	EIF2AK2	2	37374158	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	9822481	37374158	205825215	103	107469											
SLC8A1	6546	broad.mit.edu	37	chr2	40657385	40657385	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaaatcccattgaaaaGgtgggtgaaagacttaatcg	11	5	0	5			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40657385	T	T	40657385	2	4	113	1	0	0	0	0	0	0	0	1	14820	987	35	2		2	SLC8A1	2	40657385	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	3283227	40657385	202541988	104	107470											
THADA	63892	broad.mit.edu	37	chr2	43801863	43801863	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctttaatatgccattcCaatcgtaaaagactctcagt	4	10	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43801863	T	T	43801863	2	4	113	1	0	0	0	0	0	0	0	1	15963	593	21	4		4	THADA	2	43801863	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	3144478	43801863	199397510	105	107471											
PLEKHH2	130271	broad.mit.edu	37	chr2	43992633	43992633	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catttcaccacctctctgctCcagcactgctctcagcccag	5	19	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43992633	T	T	43992633	3	4	113	1	0	0	0	0	1	0	0	0	12172	855	30	4	4492	4	PLEKHH2	2	43992633	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	190770	43992633	199206740	106	107472											
SLC3A1	6519	broad.mit.edu	37	chr2	44503190	44503190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaccaaattatgcctgGgttgttcagtaagcacattc	8	9	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44503190	T	T	44503190	1	4	113	0	1	0	0	0	0	0	0	0	14740	1247	43	2		2	SLC3A1	2	44503190	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	510557	44503190	198696183	107	107473											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48896946	48896946	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtagatggaagcggtgataCatcttccaatgaagaaatag	11	5	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48896946	T	T	48896946	3	4	113	1	0	0	0	0	1	0	0	0	15435	478	17	4	3206	4	STON1-GTF2A1L	2	48896946	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4393756	48896946	194302427	108	107474											
NRXN1	9378	broad.mit.edu	37	chr2	50765775	50765775	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgttgacagaaatggtacCtatttcaaagagaggagaat	11	5	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50765775	A	A	50765775	5	1	113	1	0	0	0	0	0	0	1	0	10760	695	24	2	3083	2	NRXN1	2	50765775	Splice_Site	SNP	C	TCGA-44-2668-01A-01W-0928-08	1868829	50765775	192433598	109	107475											
FAM161A	84140	broad.mit.edu	37	chr2	62080893	62080893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactatgtgcacagggaccCgcgtttaccagcctgccctc	11	15	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62080893	A	A	62080893	1	1	113	0	1	0	0	0	0	0	0	0	5518	667	23	1		1	FAM161A	2	62080893	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	11315118	62080893	181118480	110	107476											
C2orf86	51057	broad.mit.edu	37	chr2	63349192	63349192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccaccatctctgatttcCtgcaaataaacaaataaaaa	3	10	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63349192	A	A	63349192	1	1	113	0	1	0	0	0	0	0	0	0	2223	695	24	2		2	C2orf86	2	63349192	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1268299	63349192	179850181	111	107477											
SERTAD2	9792	broad.mit.edu	37	chr2	64863748	64863748	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgggctgggaggagggggtGaacatgggcctcaggctgcc	21	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64863748	A	A	64863748	2	1	113	1	0	0	0	0	0	0	0	1	14234	1281	45	4		4	SERTAD2	2	64863748	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1514556	64863748	178335625	112	107478											
ARHGAP25	9938	broad.mit.edu	37	chr2	69034445	69034445	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgagactgtggcctatgaAcagaaattcggcccccatct	10	11	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69034445	G	G	69034445	2	3	113	1	0	0	0	0	0	0	0	1	876	40	2	5		5	ARHGAP25	2	69034445	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	4170697	69034445	174164928	113	107479											
BMP10	27302	broad.mit.edu	37	chr2	69093407	69093407	+	Frame_Shift_Del	DEL	G	-	-													ggtggatgagcctgacttttGccaacgtctgatggcatctg							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69093407	-	-	69093407	7	5	113	1	0	1	0	1	0	0	0	0	1463	1328	46	0	647	0	BMP10	2	69093407	Frame_Shift_Del	DEL	G	TCGA-44-2668-01A-01W-0928-08	58962	69093407	174105966	114	107480											
GFPT1	2673	broad.mit.edu	37	chr2	69556903	69556903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcataagggcaaacatcaCaagggatacaaactggctgg	10	9	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69556903	A	A	69556903	3	1	113	1	0	0	0	0	1	0	0	0	6409	478	17	3	609	3	GFPT1	2	69556903	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	463496	69556903	173642470	115	107481											
SPR	6697	broad.mit.edu	37	chr2	73115540	73115540	+	Frame_Shift_Del	DEL	G	-	-													ttgacctccatgctctgcctGacttccagcgtcctgaaggc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73115540	-	-	73115540	7	5	113	1	0	1	0	1	0	0	0	0	15209	1277	45	0	408	0	SPR	2	73115540	Frame_Shift_Del	DEL	G	TCGA-44-2668-01A-01W-0928-08	3558637	73115540	170083833	116	107482											
IMMT	10989	broad.mit.edu	37	chr2	86371798	86371798	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcttcactgtacacccCacgggtcagggactctggag	12	13	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86371798	T	T	86371798	3	4	113	1	0	0	0	0	1	0	0	0	7788	594	21	4	410	4	IMMT	2	86371798	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	13256258	86371798	156827575	117	107483											
RMND5A	64795	broad.mit.edu	37	chr2	87352378	87352378	+	Intron	SNP	G	T	T													ccaaaaaagcaaggccttctGagactggatctgatgatgta							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87352378	T	T	87352378	1	4	113	0	1	0	0	0	0	0	0	0	13508	1305	45	3		3	RMND5A	2	87352378	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	980580	87352378	155846995	118	107484	464	2									
RMND5A	64795	broad.mit.edu	37	chr2	87352380	87352380	+	Intron	SNP	G	A	A													aaaaaagcaaggccttctgaGactggatctgatgatgtaag							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87352380	A	A	87352380	1	1	113	0	1	0	0	0	0	0	0	0	13508	957	33	4		4	RMND5A	2	87352380	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2	87352380	155846993	119	107485	464	2									
ASTL	431705	broad.mit.edu	37	chr2	96795776	96795776	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggagaggctgggggaagcAgagggagaagaaggcagggt	23	4	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96795776	C	C	96795776	1	2	113	0	1	0	0	0	0	0	0	0	1067	203	7	5		5	ASTL	2	96795776	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	9443396	96795776	146403597	120	107486											
SNRNP200	23020	broad.mit.edu	37	chr2	96953335	96953335	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgttggtcccttctgcaGggatgtgacaaaccacccac	10	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96953335	A	A	96953335	1	1	113	0	1	0	0	0	0	0	0	0	14966	1015	35	4		4	SNRNP200	2	96953335	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	157559	96953335	146246038	121	107487											
VWA3B	200403	broad.mit.edu	37	chr2	98844805	98844805	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagacagcaagtgagcaccTctgcccgcctgtctccctgc	11	16	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98844805	A	A	98844805	1	1	113	0	1	0	0	0	0	0	0	0	17368	1566	54	5		5	VWA3B	2	98844805	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	1891470	98844805	144354568	122	107488											
MGAT4A	11320	broad.mit.edu	37	chr2	99261914	99261914	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcccagctgggaaaacTctagaatcatccattcctca	7	12	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99261914	C	C	99261914	3	2	113	1	0	0	0	0	1	0	0	0	9638	1551	54	5	852	5	MGAT4A	2	99261914	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	417109	99261914	143937459	123	107489											
NPAS2	4862	broad.mit.edu	37	chr2	101607208	101607208	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtctgtggttcaggtgctGatcagtttcctatttcccca	11	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101607208	T	T	101607208	1	4	113	0	1	0	0	0	0	0	0	0	10658	1305	45	3		3	NPAS2	2	101607208	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2345294	101607208	141592165	124	107490											
TBC1D8	11138	broad.mit.edu	37	chr2	101648757	101648757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtggttgaagtaatcggGcagcatccgctcacacacag	12	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101648757	T	T	101648757	3	4	113	1	0	0	0	0	1	0	0	0	15747	1203	42	3	1598	3	TBC1D8	2	101648757	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	41549	101648757	141550616	125	107491											
IL18RAP	8807	broad.mit.edu	37	chr2	103059756	103059756	+	Frame_Shift_Del	DEL	G	-	-													caaagattctgacctagagtGggaagtctcagtacctgagg							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103059756	-	-	103059756	7	5	113	1	0	1	0	1	0	0	0	0	7718	1357	47	0	915	0	IL18RAP	2	103059756	Frame_Shift_Del	DEL	G	TCGA-44-2668-01A-01W-0928-08	1410999	103059756	140139617	126	107492											
RGPD3	653489	broad.mit.edu	37	chr2	107041047	107041047	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacatccatgctctatctgAtccagagaggggcttcaggt	10	12	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107041047	T	T	107041047	3	4	113	1	0	0	0	0	1	0	0	0	13395	333	12	5	1916	5	RGPD3	2	107041047	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	3981291	107041047	136158326	127	107493											
CKAP2L	150468	broad.mit.edu	37	chr2	113518385	113518385	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcctcagcacagaaggattCtaagctaagcttgggaagta	10	8	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113518385	G	G	113518385	1	3	113	0	1	0	0	0	0	0	0	0	3474	928	32	4		4	CKAP2L	2	113518385	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	6477338	113518385	129680988	128	107494											
IL1F10	84639	broad.mit.edu	37	chr2	113832210	113832210	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggccaggtgtgcccatgtCcagttccttcctgcctgagc	11	15	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113832210	G	G	113832210	1	3	113	0	1	0	0	0	0	0	0	0	7722	870	30	4		4	IL1F10	2	113832210	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	313825	113832210	129367163	129	107495											
IL1F10	84639	broad.mit.edu	37	chr2	113832364	113832364	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccccattttcctggggatCcagggagggagccgctgcct	14	13	0	0	rs34320972	byFrequency	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113832364	T	T	113832364	2	4	113	1	0	0	0	0	0	0	0	1	7722	845	30	4		4	IL1F10	2	113832364	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	154	113832364	129367009	130	107496											
CNTNAP5	129684	broad.mit.edu	37	chr2	125232523	125232523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtaagtcttgctttcaCcagcccattcctgaacccat	8	13	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125232523	A	A	125232523	1	1	113	0	1	0	0	0	0	0	0	0	3682	522	18	3		3	CNTNAP5	2	125232523	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	11400159	125232523	117966850	131	107497											
CNTNAP5	129684	broad.mit.edu	37	chr2	125555733	125555733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtttcaagaaccctatcCtgtgaccaagaatataagcc	6	11	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125555733	A	A	125555733	3	1	113	1	0	0	0	0	1	0	0	0	3682	681	24	2	3124	2	CNTNAP5	2	125555733	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	323210	125555733	117643640	132	107498											
PLEKHB2	55041	broad.mit.edu	37	chr2	131935728	131935728	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgctattaaagggttctcGagaatttcttcaacagaagg	9	7	4	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131935728	T	T	131935728	1	4	113	0	1	0	0	0	0	0	0	0	12160	1073	37	3		3	PLEKHB2	2	131935728	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	6379995	131935728	111263645	133	107499											
PLEKHB2	55041	broad.mit.edu	37	chr2	131948495	131948495	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagttcttcattatatctAgggtttgctctacaaattga	7	7	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131948495	G	G	131948495	1	3	113	0	1	0	0	0	0	0	0	0	12160	435	15	5		5	PLEKHB2	2	131948495	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	12767	131948495	111250878	134	107500											
PLEKHB2	55041	broad.mit.edu	37	chr2	131960581	131960581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtagggggctttcccacCccaggcccgtcctcacagcc	10	18	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131960581	A	A	131960581	1	1	113	0	1	0	0	0	0	0	0	0	12160	638	22	2		2	PLEKHB2	2	131960581	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	12086	131960581	111238792	135	107501											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110059	132110059	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtatggaattgagttagCactgttaggattgggccagg	16	4	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132110059	A	A	132110059	1	1	113	0	1	0	0	0	0	0	0	0	12160	725	25	3		3	PLEKHB2	2	132110059	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	149478	132110059	111089314	136	107502											
NCKAP5	344148	broad.mit.edu	37	chr2	133887593	133887593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcatctgaattctgttgcGttcagactctagggtcacct	9	11	5	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133887593	T	T	133887593	3	4	113	1	0	0	0	0	1	0	0	0	10318	1145	40	3	5491	3	NCKAP5	2	133887593	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1777534	133887593	109311780	137	107503											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135907897	135907897	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttatggtacttctttttctAaaaagggctgtttatgagcc	8	6	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135907897	T	T	135907897	1	4	113	0	1	0	0	0	0	0	0	0	13043	377	13	5		5	RAB3GAP1	2	135907897	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	2020304	135907897	107291476	138	107504											
LRP1B	53353	broad.mit.edu	37	chr2	140995624	140995624	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtcccttattctaacttCagataacagaaaaacttggt	5	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995624	A	A	140995624	1	1	113	0	1	0	0	0	0	0	0	0	9042	841	29	3		3	LRP1B	2	140995624	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	5087727	140995624	102203749	139	107505											
LRP1B	53353	broad.mit.edu	37	chr2	141130549	141130549	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaaggtaaaatgttaactAaatgatatattacttcaatc	4	5	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141130549	G	G	141130549	1	3	113	0	1	0	0	0	0	0	0	0	9042	377	13	5		5	LRP1B	2	141130549	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	134925	141130549	102068824	140	107506											
LRP1B	53353	broad.mit.edu	37	chr2	141130585	141130585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatccttttacctggctcaCagcttttctcatcttcccca	3	16	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141130585	A	A	141130585	3	1	113	1	0	0	0	0	1	0	0	0	9042	478	17	3	3131	3	LRP1B	2	141130585	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	36	141130585	102068788	141	107507											
ACVR1	90	broad.mit.edu	37	chr2	158637227	158637227	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatcaacagaaagtcaagcTaagcatcaccatcaaccatg	5	12	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158637227	A	A	158637227	1	1	113	0	1	0	0	0	0	0	0	0	220	1537	53	5		5	ACVR1	2	158637227	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	17506642	158637227	84562146	142	107508											
BAZ2B	29994	broad.mit.edu	37	chr2	160239224	160239224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcttgcgtcctggagtgGgtgtgcccaagggatgctgc	16	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160239224	A	A	160239224	3	1	113	1	0	0	0	0	1	0	0	0	1337	1232	43	4	2707	4	BAZ2B	2	160239224	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1601997	160239224	82960149	143	107509											
SLC4A10	57282	broad.mit.edu	37	chr2	162799419	162799419	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtgtcagtaagtaaaacActgaaaaataagtcatacct	6	7	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162799419	C	C	162799419	1	2	113	0	1	0	0	0	0	0	0	0	14765	174	6	5		5	SLC4A10	2	162799419	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	2560195	162799419	80399954	144	107510											
GALNT3	2591	broad.mit.edu	37	chr2	166605225	166605225	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cataattttcaaaaactacaGtgtatgcctagtcacagttt	5	8	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166605225	A	A	166605225	1	1	113	0	1	0	0	0	0	0	0	0	6276	1044	36	4		4	GALNT3	2	166605225	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	3805806	166605225	76594148	145	107511											
XIRP2	129446	broad.mit.edu	37	chr2	168102029	168102029	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttattaaatctgtcacacAagaagacattcagaagggag	9	6	3	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168102029	T	T	168102029	3	4	113	1	0	0	0	0	1	0	0	0	17557	130	5	5	4157	5	XIRP2	2	168102029	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	1496804	168102029	75097344	146	107512											
XIRP2	129446	broad.mit.edu	37	chr2	168106863	168106863	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatactatcccaggatggctGataagtgaagataagagaga	11	5	0	5			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168106863	A	A	168106863	2	1	113	1	0	0	0	0	0	0	0	1	17557	1277	45	4		4	XIRP2	2	168106863	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	4834	168106863	75092510	147	107513											
KBTBD10	10324	broad.mit.edu	37	chr2	170371489	170371489	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtaagtaccctgaactcTcatgatttatgtctaaatga	6	8	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170371489	C	C	170371489	1	2	113	0	1	0	0	0	0	0	0	0	8060	1566	54	5		5	KBTBD10	2	170371489	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	2264626	170371489	72827884	148	107514											
TTN	7273	broad.mit.edu	37	chr2	179584084	179584084	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccaactgaaatcggggcTgagccagagactcggcactc	12	13	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179584084	C	C	179584084	2	2	113	1	0	0	0	0	0	0	0	1	16861	1567	55	5		5	TTN	2	179584084	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	9212595	179584084	63615289	149	107515											
SESTD1	91404	broad.mit.edu	37	chr2	179982217	179982217	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttagataaaatcaatcttCtaagaaaagttaactacata	4	5	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179982217	G	G	179982217	1	3	113	0	1	0	0	0	0	0	0	0	14240	928	32	4		4	SESTD1	2	179982217	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	398133	179982217	63217156	150	107516											
SESTD1	91404	broad.mit.edu	37	chr2	179989359	179989359	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gattacattttataatttctCcagataaactaagtaataca	3	6	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179989359	T	T	179989359	1	4	113	0	1	0	0	0	0	0	0	0	14240	870	30	4		4	SESTD1	2	179989359	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	7142	179989359	63210014	151	107517											
FRZB	2487	broad.mit.edu	37	chr2	183723563	183723563	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagaatccataggaaaatcTgaaaggaggtgacagaaaaa	10	5	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183723563	A	A	183723563	5	1	113	1	0	0	0	0	0	0	1	0	6125	1594	55	5	520	5	FRZB	2	183723563	Splice_Site	SNP	T	TCGA-44-2668-01A-01W-0928-08	3734204	183723563	59475810	152	107518											
ANKAR	150709	broad.mit.edu	37	chr2	190593280	190593280	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaagtgatcctcttgcctCagcctcccaagtagctggga	9	14	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190593280	T	T	190593280	1	4	113	0	1	0	0	0	0	0	0	0	623	841	29	4		4	ANKAR	2	190593280	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	6869717	190593280	52606093	153	107519											
MYO1B	4430	broad.mit.edu	37	chr2	192254994	192254994	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccataggaggcagtttataaCctaaaatctttgtgatcttt	7	7	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192254994	T	T	192254994	1	4	113	0	1	0	0	0	0	0	0	0	10163	522	18	4		4	MYO1B	2	192254994	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1661714	192254994	50944379	154	107520											
DNAH7	56171	broad.mit.edu	37	chr2	196659326	196659326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaatctcaaaagcataCatatgaaggatgagttggaa	9	4	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196659326	A	A	196659326	1	1	113	0	1	0	0	0	0	0	0	0	4646	493	17	3		3	DNAH7	2	196659326	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4404332	196659326	46540047	155	107521											
DNAH7	56171	broad.mit.edu	37	chr2	196859146	196859146	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatttggtcctcagtctgcTgtaaaaagttggctggggag	14	6	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196859146	A	A	196859146	1	1	113	0	1	0	0	0	0	0	0	0	4646	1595	55	5		5	DNAH7	2	196859146	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	199820	196859146	46340227	156	107522											
AOX1	316	broad.mit.edu	37	chr2	201485714	201485714	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctacaacttcgttgtcccaaGaattttttcccaattgtctg	5	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201485714	T	T	201485714	1	4	113	0	1	0	0	0	0	0	0	0	731	957	33	3		3	AOX1	2	201485714	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	4626568	201485714	41713659	157	107523											
ALS2CR12	130540	broad.mit.edu	37	chr2	202215957	202215957	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaaatcttgtgagagaaaTgaggctacaaatggatccca	10	6	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202215957	A	A	202215957	1	1	113	0	1	0	0	0	0	0	0	0	553	1479	51	5		5	ALS2CR12	2	202215957	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	730243	202215957	40983416	158	107524											
PARD3B	117583	broad.mit.edu	37	chr2	205978257	205978257	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctggggaaggaggcccAttgggaatacatgtagtgcc	14	7	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205978257	T	T	205978257	2	4	113	1	0	0	0	0	0	0	0	1	11538	204	8	5		5	PARD3B	2	205978257	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	3762300	205978257	37221116	159	107525											
ADAM23	8745	broad.mit.edu	37	chr2	207454282	207454282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcactggacttggaagcCcttcttatgcaagtgcaaaa	9	9	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207454282	A	A	207454282	1	1	113	0	1	0	0	0	0	0	0	0	245	638	22	2		2	ADAM23	2	207454282	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1476025	207454282	35745091	160	107526											
ADAM23	8745	broad.mit.edu	37	chr2	207457278	207457278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatcaatgtggaccgaatcGttttgattttttgagcttga	10	5	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207457278	A	A	207457278	1	1	113	0	1	0	0	0	0	0	0	0	245	1160	40	4		4	ADAM23	2	207457278	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2996	207457278	35742095	161	107527											
SPAG16	79582	broad.mit.edu	37	chr2	214794857	214794857	+	Frame_Shift_Del	DEL	G	-	-													ggataaaactagcaaaatttGggatgttaataggtaagaag							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	214794857	-	-	214794857	7	5	113	1	0	1	0	1	0	0	0	0	15094	1357	47	0	1450	0	SPAG16	2	214794857	Frame_Shift_Del	DEL	G	TCGA-44-2668-01A-01W-0928-08	7337579	214794857	28404516	162	107528											
MARCH4	57574	broad.mit.edu	37	chr2	217123969	217123969	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttggctctgggggtgccaCtgcacctccccaccctgctc	11	17	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217123969	G	G	217123969	1	3	113	0	1	0	0	0	0	0	0	0	9395	580	20	4		4	MARCH4	2	217123969	3'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	2329112	217123969	26075404	163	107529											
ACCN4	55515	broad.mit.edu	37	chr2	220397143	220397143	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtctgcctgccggctgcGctgtgaaaaggaggccgtgc	16	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220397143	T	T	220397143	3	4	113	1	0	0	0	0	1	0	0	0	131	1087	38	3	1357	3	ACCN4	2	220397143	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3273174	220397143	22802230	164	107530											
EPHA4	2043	broad.mit.edu	37	chr2	222428583	222428583	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagttgttgacacaggagcCtcgaacttccaccagggaag	12	10	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222428583	A	A	222428583	3	1	113	1	0	0	0	0	1	0	0	0	5211	681	24	2	2329	2	EPHA4	2	222428583	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2031440	222428583	20770790	165	107531											
FAM124B	79843	broad.mit.edu	37	chr2	225266018	225266018	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctctgcaggatcatctcGtagagtctgatggcgtcttc	10	11	6	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225266018	T	T	225266018	4	4	113	1	0	0	0	0	0	1	0	0	5472	1140	40	3	998	3	FAM124B	2	225266018	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2837435	225266018	17933355	166	107532											
PID1	55022	broad.mit.edu	37	chr2	230020666	230020666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattcaatttagacttcagCatggtctgaaagtgctgaaa	8	7	3	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230020666	A	A	230020666	3	1	113	1	0	0	0	0	1	0	0	0	11977	710	25	3	616	3	PID1	2	230020666	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4754648	230020666	13178707	167	107533											
COPS7B	64708	broad.mit.edu	37	chr2	232672272	232672272	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagcagcagctggctgaaCgggagtgtccccctcacgct	14	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232672272	T	T	232672272	3	4	113	1	0	0	0	0	1	0	0	0	3771	527	19	4	734	4	COPS7B	2	232672272	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2651606	232672272	10527101	168	107534											
COL6A3	1293	broad.mit.edu	37	chr2	238234154	238234154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaggtgacttattgacCtgaatctcttatttgcagaa	7	7	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238234154	T	T	238234154	1	4	113	0	1	0	0	0	0	0	0	0	3733	696	24	4		4	COL6A3	2	238234154	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	5561882	238234154	4965219	169	107535											
COL6A3	1293	broad.mit.edu	37	chr2	238289824	238289824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaatcccctcggcagccCggtagccggctgaactcgtg	13	14	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238289824	A	A	238289824	3	1	113	1	0	0	0	0	1	0	0	0	3733	652	23	1	8109	1	COL6A3	2	238289824	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	55670	238289824	4909549	170	107536											
PPP1R7	5510	broad.mit.edu	37	chr2	242092932	242092932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatccggcgatgaagaaGggaagaaacacagcagtggc	14	7	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242092932	T	T	242092932	3	4	113	1	0	0	0	0	1	0	0	0	12477	1000	35	2	100	2	PPP1R7	2	242092932	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3803108	242092932	1106441	171	107537											
ANO7	50636	broad.mit.edu	37	chr2	242135098	242135098	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttagccaggctcctgcctCtgtccctgttggctcccagc	9	17	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242135098	T	T	242135098	1	4	113	0	1	0	0	0	0	0	0	0	702	928	32	4		4	ANO7	2	242135098	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	42166	242135098	1064275	172	107538											
ITPR1	3708	broad.mit.edu	37	chr3	4748018	4748018	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccagagactaccggaatAtcattgagagattgcaggta	10	8	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4748018	C	C	4748018	3	2	113	1	0	0	0	0	1	0	0	0	7990	449	16	5	4963	5	ITPR1	3	4748018	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08		4748018	193274412	173	107539											
GRM7	2917	broad.mit.edu	37	chr3	7348280	7348280	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaataaacccactgcaccAgcatgaagatatcgcagaag	7	11	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7348280	G	G	7348280	3	3	113	1	0	0	0	0	1	0	0	0	6868	188	7	5	988	5	GRM7	3	7348280	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2600262	7348280	190674150	174	107540											
TGFBR2	7048	broad.mit.edu	37	chr3	30732969	30732969	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaccacgacccagaggccCgtctcacagcccagtgtgtg	13	15	1	1	rs104893810		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30732969	T	T	30732969	3	4	113	1	0	0	0	0	1	0	0	0	15945	652	23	4	1687	4	TGFBR2	3	30732969	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	23384689	30732969	167289461	175	107541											
OSBPL10	114884	broad.mit.edu	37	chr3	31871586	31871586	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttggctcttcgggcggcTgcaggcgacttgtgatgcgt	15	11	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31871586	A	A	31871586	2	1	113	1	0	0	0	0	0	0	0	1	11369	1567	55	5		5	OSBPL10	3	31871586	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	1138617	31871586	166150844	176	107542											
WDR6	11180	broad.mit.edu	37	chr3	49050698	49050698	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgacctcagtcacatgCcatggtggctatgtgtatac	12	9	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49050698	G	G	49050698	3	3	113	1	0	0	0	0	1	0	0	0	17437	747	26	4	1827	4	WDR6	3	49050698	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	17179112	49050698	148971732	177	107543											
DNAH1	25981	broad.mit.edu	37	chr3	52430796	52430796	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatgttcctggacgaatatGatgacatcccctacaaggtg	10	9	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52430796	A	A	52430796	3	1	113	1	0	0	0	0	1	0	0	0	4637	1290	45	4	11875	4	DNAH1	3	52430796	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3380098	52430796	145591634	178	107544											
FAM107A	11170	broad.mit.edu	37	chr3	58555486	58555486	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccttcacggggttcagCagcttcttgggcttgatgag	15	9	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58555486	A	A	58555486	2	1	113	1	0	0	0	0	0	0	0	1	5435	697	25	3		3	FAM107A	3	58555486	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	6124690	58555486	139466944	179	107545											
CNTN3	5067	broad.mit.edu	37	chr3	74315674	74315674	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgttcactactggtcccatCccctccatctgttgtggcct	7	16	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74315674	G	G	74315674	3	3	113	1	0	0	0	0	1	0	0	0	3674	855	30	4	150	4	CNTN3	3	74315674	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	15760188	74315674	123706756	180	107546											
EPHA6	285220	broad.mit.edu	37	chr3	96706286	96706286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtacaaactggatctcccGtgatgcagctcagaaaattt	8	10	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96706286	T	T	96706286	3	4	113	1	0	0	0	0	1	0	0	0	5213	1145	40	3	573	3	EPHA6	3	96706286	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	22390612	96706286	101316144	181	107547											
TRAT1	50852	broad.mit.edu	37	chr3	108568149	108568149	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcacatttcaagagcataaGagtagtacattatgatacac	7	7	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108568149	T	T	108568149	1	4	113	0	1	0	0	0	0	0	0	0	16590	957	33	3		3	TRAT1	3	108568149	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	11861863	108568149	89454281	182	107548											
CD200R1	131450	broad.mit.edu	37	chr3	112648181	112648181	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagacccaggttattctctCatcagtacagttggtttcct	9	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112648181	A	A	112648181	4	1	113	1	0	0	0	0	0	1	0	0	3011	835	29	3	737	3	CD200R1	3	112648181	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4080032	112648181	85374249	183	107549											
ADPRH	141	broad.mit.edu	37	chr3	119306729	119306729	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtaatttccctttagggaGacgtgatgttcacttctgat	9	8	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119306729	A	A	119306729	1	1	113	0	1	0	0	0	0	0	0	0	331	957	33	4		4	ADPRH	3	119306729	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	6658548	119306729	78715701	184	107550											
FBXO40	51725	broad.mit.edu	37	chr3	121341414	121341414	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaacacaaggcagtggatActtcagatttggggatcact	12	7	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121341414	T	T	121341414	3	4	113	1	0	0	0	0	1	0	0	0	5806	391	14	5	1144	5	FBXO40	3	121341414	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2034685	121341414	76681016	185	107551											
GOLGB1	2804	broad.mit.edu	37	chr3	121447980	121447980	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgattggtgaagatctgcTgtattggtaggttttttcaa	12	3	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121447980	A	A	121447980	1	1	113	0	1	0	0	0	0	0	0	0	6629	1595	55	5		5	GOLGB1	3	121447980	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	106566	121447980	76574450	186	107552											
KALRN	8997	broad.mit.edu	37	chr3	123863305	123863305	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccccttccaggtatgcaCaccacttccttgtcattgtc	5	16	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123863305	T	T	123863305	1	4	113	0	1	0	0	0	0	0	0	0	8045	493	17	4		4	KALRN	3	123863305	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2415325	123863305	74159125	187	107553											
KALRN	8997	broad.mit.edu	37	chr3	124160959	124160959	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcagcgacagcccctccctGaaatataccatgtacccagt	6	15	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124160959	T	T	124160959	1	4	113	0	1	0	0	0	0	0	0	0	8045	1305	45	3		3	KALRN	3	124160959	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	297654	124160959	73861471	188	107554											
EEFSEC	60678	broad.mit.edu	37	chr3	127981081	127981081	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattgaggtactgtcatcttGaatccaggttgccctttagc	9	10	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127981081	C	C	127981081	1	2	113	0	1	0	0	0	0	0	0	0	4971	1305	45	4		4	EEFSEC	3	127981081	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3820122	127981081	70041349	189	107555											
PRR23C	389152	broad.mit.edu	37	chr3	138762887	138762887	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagggccctcggatgggGccctcccggtaggggctgaa	17	13	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138762887	T	T	138762887	2	4	113	1	0	0	0	0	0	0	0	1	12702	1190	42	3		3	PRR23C	3	138762887	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	10781806	138762887	59259543	190	107556											
ATR	545	broad.mit.edu	37	chr3	142184085	142184085	+	Intron	DEL	A	-	-													agaagcaagaatttccacctAaaagatgatgagttatatat							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142184085	-	-	142184085	6	5	113	0	1	1	0	1	0	0	0	0	1208	377	13	0		0	ATR	3	142184085	Intron	DEL	A	TCGA-44-2668-01A-01W-0928-08	3421198	142184085	55838345	191	107557											
ATR	545	broad.mit.edu	37	chr3	142188251	142188251	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actttggctattatttccatCaagacaacaaaaacttcatc	3	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142188251	G	G	142188251	3	3	113	1	0	0	0	0	1	0	0	0	1208	825	29	4	1494	4	ATR	3	142188251	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4166	142188251	55834179	192	107558											
HLTF	6596	broad.mit.edu	37	chr3	148759887	148759887	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtatgccacataaaaaaAatttatcactcttatttaag	3	6	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148759887	G	G	148759887	1	3	113	0	1	0	0	0	0	0	0	0	7282	29	1	5		5	HLTF	3	148759887	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	6571636	148759887	49262543	193	107559											
WWTR1	25937	broad.mit.edu	37	chr3	149374727	149374727	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccgggggcagtggcagctCgtcggtcacgtcgtaggact	17	12	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149374727	G	G	149374727	3	3	113	1	0	0	0	0	1	0	0	0	17544	893	31	4	859	4	WWTR1	3	149374727	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	614840	149374727	48647703	194	107560											
FAM194A	131831	broad.mit.edu	37	chr3	150377865	150377865	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatgaaacaggcgacggatCtttattaaactggccagcag	10	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150377865	G	G	150377865	3	3	113	1	0	0	0	0	1	0	0	0	5573	912	32	4	189	4	FAM194A	3	150377865	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1003138	150377865	47644565	195	107561											
CLRN1	7401	broad.mit.edu	37	chr3	150644624	150644624	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggttgaggatgaaggaaGggtcagttccaggctcagct	16	7	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150644624	T	T	150644624	1	4	113	0	1	0	0	0	0	0	0	0	3589	1015	35	2		2	CLRN1	3	150644624	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	266759	150644624	47377806	196	107562											
SI	6476	broad.mit.edu	37	chr3	164727306	164727306	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataatgaaggaaattgacatCaatcttaattacataaatgt	5	4	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164727306	A	A	164727306	1	1	113	0	1	0	0	0	0	0	0	0	14410	841	29	3		3	SI	3	164727306	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	14082682	164727306	33295124	197	107563											
SI	6476	broad.mit.edu	37	chr3	164777158	164777158	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcaagtcaatctttaactCcattgaacgtgtattataaa	4	7	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164777158	A	A	164777158	1	1	113	0	1	0	0	0	0	0	0	0	14410	870	30	3		3	SI	3	164777158	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	49852	164777158	33245272	198	107564											
BCHE	590	broad.mit.edu	37	chr3	165548428	165548428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatacagtggcattttttgGtttaggtgctggaatccata	10	6	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165548428	T	T	165548428	3	4	113	1	0	0	0	0	1	0	0	0	1363	1261	44	3	1426	3	BCHE	3	165548428	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	771270	165548428	32474002	199	107565											
SLC7A14	57709	broad.mit.edu	37	chr3	170204287	170204287	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggagtaacatggtggaactCgtgctaaacacgcaggttct	13	8	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170204287	G	G	170204287	1	3	113	0	1	0	0	0	0	0	0	0	14810	899	31	4		4	SLC7A14	3	170204287	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4655859	170204287	27818143	200	107566											
SPATA16	83893	broad.mit.edu	37	chr3	172835526	172835526	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcttcctgcatccatcgatCctgcccaaaactcctgcagg	7	16	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172835526	G	G	172835526	1	3	113	0	1	0	0	0	0	0	0	0	15117	870	30	4		4	SPATA16	3	172835526	5'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	2631239	172835526	25186904	201	107567											
PIK3CA	5290	broad.mit.edu	37	chr3	178921566	178921566	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgtgaatgtaaatattcgaGacattgataaggtaaagtca	9	4	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178921566	A	A	178921566	3	1	113	1	0	0	0	0	1	0	0	0	12008	942	33	4	1062	4	PIK3CA	3	178921566	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6086040	178921566	19100864	202	107568											
PEX5L	51555	broad.mit.edu	37	chr3	179525416	179525416	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttcagattattcgacctCagtcctgggcatggccttca	8	13	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179525416	T	T	179525416	1	4	113	0	1	0	0	0	0	0	0	0	11844	841	29	4		4	PEX5L	3	179525416	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	603850	179525416	18497014	203	107569											
CCDC39	339829	broad.mit.edu	37	chr3	180381801	180381801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataataaatactatgattaaCcaaagtcctattaagtttta	3	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180381801	A	A	180381801	1	1	113	0	1	0	0	0	0	0	0	0	2838	522	18	3		3	CCDC39	3	180381801	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	856385	180381801	17640629	204	107570											
MCF2L2	23101	broad.mit.edu	37	chr3	183013262	183013262	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaactttctgggcttTggcctacagtaacaaaagca	8	10	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183013262	A	A	183013262	4	1	113	1	0	0	0	0	0	1	0	0	9473	1821	63	5	1915	5	MCF2L2	3	183013262	Nonsense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	2631461	183013262	15009168	205	107571											
EIF4A2	1974	broad.mit.edu	37	chr3	186502525	186502525	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaggaaattgttctacataGacatgaaccataaaagggaa	8	5	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186502525	A	A	186502525	1	1	113	0	1	0	0	0	0	0	0	0	5067	957	33	4		4	EIF4A2	3	186502525	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3489263	186502525	11519905	206	107572											
LRRC15	131578	broad.mit.edu	37	chr3	194081543	194081543	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctcagggcgatgagggctGagatattgaggaacggggac	17	7	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194081543	A	A	194081543	3	1	113	1	0	0	0	0	1	0	0	0	9057	1294	45	4	1519	4	LRRC15	3	194081543	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	7579018	194081543	3940887	207	107573											
KIAA0226	9711	broad.mit.edu	37	chr3	197410140	197410140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaggtcacagaggctcaCgatggcccctgggtaggaag	14	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197410140	A	A	197410140	1	1	113	0	1	0	0	0	0	0	0	0	8232	551	19	3		3	KIAA0226	3	197410140	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3328597	197410140	612290	208	107574											
RNF212	285498	broad.mit.edu	37	chr4	1090649	1090649	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaagagaaagaaatgactCtacatttattgtgtctaata	7	4	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1090649	A	A	1090649	1	1	113	0	1	0	0	0	0	0	0	0	13587	928	32	3		3	RNF212	4	1090649	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08		1090649	190063627	209	107575											
CRMP1	1400	broad.mit.edu	37	chr4	5868515	5868515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaagtattaaggatcctTggtgaaaagccaggataaag	12	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5868515	C	C	5868515	1	2	113	0	1	0	0	0	0	0	0	0	3922	1827	63	5		5	CRMP1	4	5868515	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	4777866	5868515	185285761	210	107576											
JAKMIP1	152789	broad.mit.edu	37	chr4	6083525	6083525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcagacaacttgacgaCggacggccgaggtcacagca	13	12	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6083525	A	A	6083525	1	1	113	0	1	0	0	0	0	0	0	0	8010	551	19	3		3	JAKMIP1	4	6083525	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	215010	6083525	185070751	211	107577											
PPP2R2C	5522	broad.mit.edu	37	chr4	6380402	6380402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgggaccaagtgccgaGccgtgccagggatccaattc	14	13	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6380402	T	T	6380402	1	4	113	0	1	0	0	0	0	0	0	0	12487	986	34	3		3	PPP2R2C	4	6380402	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	296877	6380402	184773874	212	107578											
CLRN2	645104	broad.mit.edu	37	chr4	17524543	17524543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgtgatgattctgctgCtcctcttcctggccttggcc	9	13	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17524543	A	A	17524543	3	1	113	1	0	0	0	0	1	0	0	0	3590	797	28	3	316	3	CLRN2	4	17524543	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	11144141	17524543	173629733	213	107579											
TBC1D19	55296	broad.mit.edu	37	chr4	26585922	26585922	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acggcaggcctgggtaagtgAggccgagtgggaagggatgc	20	7	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26585922	G	G	26585922	1	3	113	0	1	0	0	0	0	0	0	0	15726	319	11	5		5	TBC1D19	4	26585922	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	9061379	26585922	164568354	214	107580											
TBC1D1	23216	broad.mit.edu	37	chr4	38097635	38097636	+	Nonsense_Mutation	DNP	GG	TT	TT													aaagaagtaactacagtgtgGgaaaagatgcttagcactcc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38097636	TT	TT	38097635	4	4	113	1	0	0	0	0	0	1	0	0	15716	1241	43	2	2372	2	TBC1D1	4	38097635	Nonsense_Mutation	DNP	GG	TCGA-44-2668-01A-01W-0928-08	11511713	38097635	153056641	215	107581											
UGDH	7358	broad.mit.edu	37	chr4	39511522	39511522	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgggcaagaaaagcattTgctgccttaaaaaaaaaaaa	7	7	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39511522	C	C	39511522	2	2	113	1	0	0	0	0	0	0	0	1	17066	1799	63	5		5	UGDH	4	39511522	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	1413887	39511522	151642754	216	107582											
SLAIN2	57606	broad.mit.edu	37	chr4	48381849	48381849	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgatgtacagattctagcCcggatgcaggaagaaagtaa	11	7	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48381849	G	G	48381849	2	3	113	1	0	0	0	0	0	0	0	1	14479	610	22	4		4	SLAIN2	4	48381849	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	8870327	48381849	142772427	217	107583											
PDGFRA	5156	broad.mit.edu	37	chr4	55156695	55156695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgtccctgaggaggaGgacctgggcaagaggaacag	16	10	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55156695	T	T	55156695	3	4	113	1	0	0	0	0	1	0	0	0	11755	991	35	2	3178	2	PDGFRA	4	55156695	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6774846	55156695	135997581	218	107584											
REST	5978	broad.mit.edu	37	chr4	57796165	57796165	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaacttcaaaaaacatgtaGagctacatgtgaacccacgg	8	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57796165	C	C	57796165	3	2	113	1	0	0	0	0	1	0	0	0	13342	943	33	4	1151	4	REST	4	57796165	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2639470	57796165	133358111	219	107585											
POLR2B	5431	broad.mit.edu	37	chr4	57887210	57887210	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagatacagtggaaacactaAttttttatgcaaaaaaagtt	6	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57887210	T	T	57887210	1	4	113	0	1	0	0	0	0	0	0	0	12310	116	4	5		5	POLR2B	4	57887210	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	91045	57887210	133267066	220	107586											
POLR2B	5431	broad.mit.edu	37	chr4	57896476	57896476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcatcagatccatatcagGttcatgtttgcaatctttgt	8	8	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57896476	T	T	57896476	3	4	113	1	0	0	0	0	1	0	0	0	12310	1261	44	3	3440	3	POLR2B	4	57896476	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	9266	57896476	133257800	221	107587											
LPHN3	23284	broad.mit.edu	37	chr4	62801787	62801787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttagagtttattttttaaGcttgagggaattgaacttgc	11	3	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62801787	T	T	62801787	1	4	113	0	1	0	0	0	0	0	0	0	9004	986	34	3		3	LPHN3	4	62801787	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	4905311	62801787	128352489	222	107588											
UGT2B15	7366	broad.mit.edu	37	chr4	69520040	69520040	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaattgaataagaaatgcaCaatataaggaacttaaagca	7	4	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69520040	T	T	69520040	1	4	113	0	1	0	0	0	0	0	0	0	17084	493	17	4		4	UGT2B15	4	69520040	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	6718253	69520040	121634236	223	107589											
UGT2B7	7364	broad.mit.edu	37	chr4	69973836	69973836	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaggtcatccaaagaccaGagcttttataactcatggtg	8	10	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69973836	T	T	69973836	3	4	113	1	0	0	0	0	1	0	0	0	17088	942	33	3	1124	3	UGT2B7	4	69973836	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	453796	69973836	121180440	224	107590											
C4orf40	401137	broad.mit.edu	37	chr4	71020209	71020209	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaattgtttataggcattTgtgcttatgataaagtacta	8	4	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71020209	C	C	71020209	1	2	113	0	1	0	0	0	0	0	0	0	2292	1827	63	5		5	C4orf40	4	71020209	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	1046373	71020209	120134067	225	107591											
SMR3A	26952	broad.mit.edu	37	chr4	71227951	71227951	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaccattacttcagatttcTttttacattaatgatgttac	3	7	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71227951	C	C	71227951	1	2	113	0	1	0	0	0	0	0	0	0	14925	1624	56	5		5	SMR3A	4	71227951	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	207742	71227951	119926325	226	107592											
SLC4A4	8671	broad.mit.edu	37	chr4	72166001	72166001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccatagcacgggcacacGgccaggctaatgatgagcag	13	12	0	2	rs145370090	by1000genomes	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72166001	T	T	72166001	1	4	113	0	1	0	0	0	0	0	0	0	14770	1131	39	1		1	SLC4A4	4	72166001	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	938050	72166001	118988275	227	107593											
SLC4A4	8671	broad.mit.edu	37	chr4	72319400	72319400	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcaggtgggtatggtttTgaggaggacacaaatagtac	14	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72319400	C	C	72319400	1	2	113	0	1	0	0	0	0	0	0	0	14770	1827	63	5		5	SLC4A4	4	72319400	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	153399	72319400	118834876	228	107594											
GC	2638	broad.mit.edu	37	chr4	72634043	72634043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcatagcagtcagggtcaGccccttccgcacagcaggct	11	14	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72634043	T	T	72634043	3	4	113	1	0	0	0	0	1	0	0	0	6344	971	34	3	1228	3	GC	4	72634043	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	314643	72634043	118520233	229	107595											
ANKRD17	26057	broad.mit.edu	37	chr4	73950895	73950895	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatggtattaaaattatgatGaggtttgaaacctgctgttt	9	3	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73950895	A	A	73950895	1	1	113	0	1	0	0	0	0	0	0	0	646	1305	45	4		4	ANKRD17	4	73950895	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1316852	73950895	117203381	230	107596											
FGF5	2250	broad.mit.edu	37	chr4	81207742	81207742	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagaaaaagccacctagCcctatcaagccaaagattcc	6	12	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81207742	G	G	81207742	3	3	113	1	0	0	0	0	1	0	0	0	5912	738	26	4	733	4	FGF5	4	81207742	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	7256847	81207742	109946534	231	107597											
PRKG2	5593	broad.mit.edu	37	chr4	82096115	82096115	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatgagcttcttctcacTggtataatggaaaagagatg	10	5	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82096115	A	A	82096115	5	1	113	1	0	0	0	0	0	0	1	0	12629	1594	55	5	1896	5	PRKG2	4	82096115	Splice_Site	SNP	T	TCGA-44-2668-01A-01W-0928-08	888373	82096115	109058161	232	107598											
SCD5	79966	broad.mit.edu	37	chr4	83626448	83626448	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctcacctggaaagccatGgagttggcgacagccagaaa	11	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83626448	A	A	83626448	2	1	113	1	0	0	0	0	0	0	0	1	13999	1335	47	4		4	SCD5	4	83626448	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1530333	83626448	107527828	233	107599											
MMRN1	22915	broad.mit.edu	37	chr4	90857222	90857222	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgacaatcagagatataaCtttgttttgcaagtcgccaa	7	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90857222	G	G	90857222	3	3	113	1	0	0	0	0	1	0	0	0	9764	564	20	4	2413	4	MMRN1	4	90857222	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	7230774	90857222	100297054	234	107600											
GRID2	2895	broad.mit.edu	37	chr4	94159624	94159624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactatggagaagagcttGgcagaggtgttcgaaaagta	13	6	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94159624	T	T	94159624	3	4	113	1	0	0	0	0	1	0	0	0	6838	1348	47	2	1258	2	GRID2	4	94159624	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3302402	94159624	96994652	235	107601											
GRID2	2895	broad.mit.edu	37	chr4	94436452	94436452	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcatgtccgcatgaaaGgactgaatccttttgagagg	12	7	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94436452	T	T	94436452	4	4	113	1	0	0	0	0	0	1	0	0	6838	1001	35	2	2133	2	GRID2	4	94436452	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	276828	94436452	96717824	236	107602											
SMARCAD1	56916	broad.mit.edu	37	chr4	95197502	95197502	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgacagatataactgtgcGatcagcagttctgatgaccg	12	8	2	4	rs111425618		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95197502	T	T	95197502	2	4	113	1	0	0	0	0	0	0	0	1	14886	1045	37	3		3	SMARCAD1	4	95197502	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	761050	95197502	95956774	237	107603											
UNC5C	8633	broad.mit.edu	37	chr4	96091525	96091525	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacacagcattatttctgagGacaaaagcaatctctattga	6	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96091525	T	T	96091525	1	4	113	0	1	0	0	0	0	0	0	0	17119	1189	41	3		3	UNC5C	4	96091525	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	894023	96091525	95062751	238	107604											
ADH1A	124	broad.mit.edu	37	chr4	100232649	100232649	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatatattgagattaatgaGaatttggcacttgagcccaa	9	5	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100232649	T	T	100232649	1	4	113	0	1	0	0	0	0	0	0	0	307	957	33	3		3	ADH1A	4	100232649	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	4141124	100232649	90921627	239	107605											
C4orf17	84103	broad.mit.edu	37	chr4	100451036	100451036	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctactcctggctcctgttCttcagggatgacaagtacca	8	13	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100451036	A	A	100451036	3	1	113	1	0	0	0	0	1	0	0	0	2275	913	32	3	481	3	C4orf17	4	100451036	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	218387	100451036	90703240	240	107606											
CFI	3426	broad.mit.edu	37	chr4	110670479	110670479	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccatgggaggtctcccTgtaaaagacatttgtgtggt	12	9	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110670479	A	A	110670479	5	1	113	1	0	0	0	0	0	0	1	0	3319	1594	55	5	724	5	CFI	4	110670479	Splice_Site	SNP	T	TCGA-44-2668-01A-01W-0928-08	10219443	110670479	80483797	241	107607											
ANK2	287	broad.mit.edu	37	chr4	114279402	114279402	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggggatttcagcctccActgaaacacctacaaaagaa	7	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114279402	G	G	114279402	3	3	113	1	0	0	0	0	1	0	0	0	621	159	6	5	9843	5	ANK2	4	114279402	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	3608923	114279402	76874874	242	107608											
TRAM1L1	133022	broad.mit.edu	37	chr4	118005390	118005390	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctagtgcagaaagaaaCctcaaagagcagattccttt	7	9	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118005390	A	A	118005390	1	1	113	0	1	0	0	0	0	0	0	0	16576	522	18	3		3	TRAM1L1	4	118005390	3'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	3725988	118005390	73148886	243	107609											
TRAM1L1	133022	broad.mit.edu	37	chr4	118005823	118005823	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctttctggtacttttcatCactaaagtaaaacaggccgc	7	11	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118005823	T	T	118005823	3	4	113	1	0	0	0	0	1	0	0	0	16576	826	29	4	386	4	TRAM1L1	4	118005823	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	433	118005823	73148453	244	107610											
SYNPO2	171024	broad.mit.edu	37	chr4	119952637	119952637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acgctgctcgagctcagtctCccactccatctctcccggcc	7	20	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119952637	T	T	119952637	3	4	113	1	0	0	0	0	1	0	0	0	15576	855	30	4	2721	4	SYNPO2	4	119952637	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1946814	119952637	71201639	245	107611											
FAT4	79633	broad.mit.edu	37	chr4	126328260	126328260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccaaattttccagacccGtgtactcttttgacattcct	4	14	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126328260	T	T	126328260	3	4	113	1	0	0	0	0	1	0	0	0	5749	1145	40	3	5543	3	FAT4	4	126328260	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6375623	126328260	64826016	246	107612											
FAT4	79633	broad.mit.edu	37	chr4	126367708	126367708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcttccaggtaatcaacCaaattctgaggccacatgga	7	11	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126367708	A	A	126367708	1	1	113	0	1	0	0	0	0	0	0	0	5749	609	21	2		2	FAT4	4	126367708	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	39448	126367708	64786568	247	107613											
PCDH10	57575	broad.mit.edu	37	chr4	134073054	134073054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaacgggactccagcgCgtgaggtgctgccccgctcg	16	15	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134073054	A	A	134073054	3	1	113	1	0	0	0	0	1	0	0	0	11601	768	27	3	1761	3	PCDH10	4	134073054	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	7705346	134073054	57081222	248	107614											
FSTL5	56884	broad.mit.edu	37	chr4	162431521	162431521	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taataatcaagcaaaattgtCacaacataaaaataattcaa	2	6	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162431521	A	A	162431521	1	1	113	0	1	0	0	0	0	0	0	0	6140	841	29	3		3	FSTL5	4	162431521	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	28358467	162431521	28722755	249	107615											
MARCH1	55016	broad.mit.edu	37	chr4	164853829	164853829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacatgagtgcggttggggGctgcaggtccacctgcaggg	17	10	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164853829	T	T	164853829	1	4	113	0	1	0	0	0	0	0	0	0	9390	1218	42	3		3	MARCH1	4	164853829	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2422308	164853829	26300447	250	107616											
TRIM61	391712	broad.mit.edu	37	chr4	165891177	165891177	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacttgaacaaagatggtaGgtaaggtaattcttttattt	9	3	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165891177	C	C	165891177	1	2	113	0	1	0	0	0	0	0	0	0	16661	1015	35	4		4	TRIM61	4	165891177	5'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	1037348	165891177	25263099	251	107617											
SPOCK3	50859	broad.mit.edu	37	chr4	167713350	167713350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcctcagcaatgtttttGtcttcttgttttgacttcca	7	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167713350	T	T	167713350	3	4	113	1	0	0	0	0	1	0	0	0	15199	1377	48	3	641	3	SPOCK3	4	167713350	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1822173	167713350	23440926	252	107618											
GALNT7	51809	broad.mit.edu	37	chr4	174219404	174219404	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaaacgggtgcctctgacCcctcaagagaagagactgag	13	10	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174219404	T	T	174219404	2	4	113	1	0	0	0	0	0	0	0	1	6280	610	22	4		4	GALNT7	4	174219404	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	6506054	174219404	16934872	253	107619											
FAT1	2195	broad.mit.edu	37	chr4	187518096	187518096	+	Frame_Shift_Del	DEL	C	-	-													aatcatcttacggcagagaaCaaacaccaccaccagtaaaa							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	187518096	-	-	187518096	7	5	113	1	0	1	0	1	0	0	0	0	5746	478	17	0	1180	0	FAT1	4	187518096	Frame_Shift_Del	DEL	C	TCGA-44-2668-01A-01W-0928-08	13298692	187518096	3636180	254	107620											
NSUN2	54888	broad.mit.edu	37	chr5	6602491	6602491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaaggttcccaccttcCcaagtcactttcctcaccaa	5	15	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6602491	A	A	6602491	1	1	113	0	1	0	0	0	0	0	0	0	10773	638	22	2		2	NSUN2	5	6602491	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08		6602491	174312769	255	107621											
ADCY2	108	broad.mit.edu	37	chr5	7698359	7698359	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtaatttattcttccaGgagaatgaatgcatgagaat	8	5	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7698359	T	T	7698359	5	4	113	1	0	0	0	0	0	0	1	0	294	1014	35	2	1007	2	ADCY2	5	7698359	Splice_Site	SNP	G	TCGA-44-2668-01A-01W-0928-08	1095868	7698359	173216901	256	107622											
CTNND2	1501	broad.mit.edu	37	chr5	11159645	11159645	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagacagtgtctggccAggggaagatggtgggaggag	20	4	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11159645	G	G	11159645	1	3	113	0	1	0	0	0	0	0	0	0	4054	203	7	5		5	CTNND2	5	11159645	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	3461286	11159645	169755615	257	107623											
ANKH	56172	broad.mit.edu	37	chr5	14746065	14746065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtggctgtcaaaatcgCcactgcctgcaacaggaaga	11	10	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14746065	A	A	14746065	3	1	113	1	0	0	0	0	1	0	0	0	627	739	26	3	673	3	ANKH	5	14746065	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3586420	14746065	166169195	258	107624											
CDH18	1016	broad.mit.edu	37	chr5	19721654	19721654	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacacagaaaatgggtatgCtgaaatagctatggagatca	11	5	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19721654	G	G	19721654	1	3	113	0	1	0	0	0	0	0	0	0	3133	812	28	4		4	CDH18	5	19721654	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4975589	19721654	161193606	259	107625											
PRDM9	56979	broad.mit.edu	37	chr5	23509441	23509441	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagttaaatgggacacagtCtggagaaggagggaagatct	14	5	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509441	A	A	23509441	1	1	113	0	1	0	0	0	0	0	0	0	12569	928	32	3		3	PRDM9	5	23509441	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3787787	23509441	157405819	260	107626											
CDH10	1008	broad.mit.edu	37	chr5	24505369	24505370	+	Intron	DNP	GG	TT	TT													aaggaaaatctgaacatggaGggcaagaaaaaatacatggc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	24505370	TT	TT	24505369	1	4	113	0	1	0	0	0	0	0	0	0	3126	1015	35	2		2	CDH10	5	24505369	Intron	DNP	GG	TCGA-44-2668-01A-01W-0928-08	995928	24505369	156409891	261	107627											
CDH10	1008	broad.mit.edu	37	chr5	24509715	24509715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgggtcccttgccattaCagtaccaatgattgtgccca	8	12	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24509715	A	A	24509715	3	1	113	1	0	0	0	0	1	0	0	0	3126	478	17	3	1174	3	CDH10	5	24509715	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4346	24509715	156405545	262	107628											
CDH6	1004	broad.mit.edu	37	chr5	31305452	31305452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaactggcctacatcttaCaaataagagaagatgctcag	8	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31305452	A	A	31305452	3	1	113	1	0	0	0	0	1	0	0	0	3144	479	17	3	1193	3	CDH6	5	31305452	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	6795737	31305452	149609808	263	107629											
CDH6	1004	broad.mit.edu	37	chr5	31322949	31322949	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggtgctgtttgcagctcTgaggcggcagcgaaaaaaag	15	7	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31322949	A	A	31322949	3	1	113	1	0	0	0	0	1	0	0	0	3144	1580	55	5	1949	5	CDH6	5	31322949	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	17497	31322949	149592311	264	107630											
RNASEN	29102	broad.mit.edu	37	chr5	31526186	31526186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacacacaagcggtttacCtgctccgttcgtagctgcgg	10	13	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31526186	A	A	31526186	3	1	113	1	0	0	0	0	1	0	0	0	13528	695	24	2	3398	2	RNASEN	5	31526186	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	203237	31526186	149389074	265	107631											
ADAMTS12	81792	broad.mit.edu	37	chr5	33662191	33662191	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgggagagctcactgtgGtcagggaccattgcattagg	15	8	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33662191	A	A	33662191	1	1	113	0	1	0	0	0	0	0	0	0	257	1276	44	4		4	ADAMTS12	5	33662191	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2136005	33662191	147253069	266	107632											
SPEF2	79925	broad.mit.edu	37	chr5	35753908	35753908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcacttcccttcacagCctcattcctcagtccttcat	4	18	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35753908	A	A	35753908	1	1	113	0	1	0	0	0	0	0	0	0	15153	754	26	3		3	SPEF2	5	35753908	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2091717	35753908	145161352	267	107633											
IL7R	3575	broad.mit.edu	37	chr5	35876456	35876456	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actacaaacagcacgctgccCcctccattttctctccaatc	3	18	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35876456	G	G	35876456	2	3	113	1	0	0	0	0	0	0	0	1	7775	610	22	4		4	IL7R	5	35876456	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	122548	35876456	145038804	268	107634											
CAPSL	133690	broad.mit.edu	37	chr5	35909945	35909945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaattgaagaaatttcccCtagattaggctcttttactt	6	8	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35909945	A	A	35909945	1	1	113	0	1	0	0	0	0	0	0	0	2665	696	24	2		2	CAPSL	5	35909945	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	33489	35909945	145005315	269	107635											
GHR	2690	broad.mit.edu	37	chr5	42629109	42629109	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagattgttttgatggggatGactaatggttttcttctctt	10	5	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42629109	C	C	42629109	1	2	113	0	1	0	0	0	0	0	0	0	6435	1305	45	4		4	GHR	5	42629109	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	6719164	42629109	138286151	270	107636											
MGC42105	167359	broad.mit.edu	37	chr5	43276958	43276958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacttggcatcaaaacctGtgtgtggaagactcacaccg	11	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43276958	T	T	43276958	1	4	113	0	1	0	0	0	0	0	0	0	9645	1392	48	3		3	MGC42105	5	43276958	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	647849	43276958	137638302	271	107637											
ITGA2	3673	broad.mit.edu	37	chr5	52370859	52370859	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctctgagtatgaagcatCatagactgagaaattttaat	9	6	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52370859	T	T	52370859	1	4	113	0	1	0	0	0	0	0	0	0	7945	841	29	4		4	ITGA2	5	52370859	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	9093901	52370859	128544401	272	107638											
IL31RA	133396	broad.mit.edu	37	chr5	55164777	55164777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatcagtcagggcatgggGgaggcagaggcttctgattc	15	7	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55164777	T	T	55164777	1	4	113	0	1	0	0	0	0	0	0	0	7761	1247	43	2		2	IL31RA	5	55164777	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2793918	55164777	125750483	273	107639											
IQGAP2	10788	broad.mit.edu	37	chr5	75923418	75923418	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttaatttctgaaagatttgGattcttaccaagttttagtt	6	4	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75923418	T	T	75923418	1	4	113	0	1	0	0	0	0	0	0	0	7885	1189	41	3		3	IQGAP2	5	75923418	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	20758641	75923418	104991842	274	107640											
MARCH3	115123	broad.mit.edu	37	chr5	126253786	126253786	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctgccacaatcctccacCgtcttcaccacgggtgcagc	9	17	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126253786	G	G	126253786	2	3	113	1	0	0	0	0	0	0	0	1	9394	639	23	4		4	MARCH3	5	126253786	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	50330368	126253786	54661474	275	107641											
SLC12A2	6558	broad.mit.edu	37	chr5	127516628	127516628	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaaaaaatggaaagacTgtaagatcagagtattcatt	8	5	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127516628	A	A	127516628	3	1	113	1	0	0	0	0	1	0	0	0	14496	1580	55	5	3244	5	SLC12A2	5	127516628	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	1262842	127516628	53398632	276	107642											
FBN2	2201	broad.mit.edu	37	chr5	127727777	127727777	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatcggtagcttgagacagTtggtatacagcgtccattta	10	8	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127727777	A	A	127727777	3	1	113	1	0	0	0	0	1	0	0	0	5760	1725	60	5	7421	5	FBN2	5	127727777	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	211149	127727777	53187483	277	107643											
ADAMTS19	171019	broad.mit.edu	37	chr5	128862065	128862065	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcaagaatacaacatagaGactgtagtggttgcagaccc	9	10	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128862065	C	C	128862065	3	2	113	1	0	0	0	0	1	0	0	0	264	933	33	4	998	4	ADAMTS19	5	128862065	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1134288	128862065	52053195	278	107644											
ADAMTS19	171019	broad.mit.edu	37	chr5	128990178	128990178	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgttgaaggaaaattgtggGaccactgagcagcttcacag	12	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128990178	A	A	128990178	1	1	113	0	1	0	0	0	0	0	0	0	264	1189	41	4		4	ADAMTS19	5	128990178	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	128113	128990178	51925082	279	107645											
GFRA3	2676	broad.mit.edu	37	chr5	137593429	137593429	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgttgcgccggcgctcCccgcagccccggtcgttggg	16	15	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137593429	A	A	137593429	2	1	113	1	0	0	0	0	0	0	0	1	6413	610	22	2		2	GFRA3	5	137593429	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	8603251	137593429	43321831	280	107646											
APBB3	10307	broad.mit.edu	37	chr5	139942168	139942168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatactccctgtcttcaccCttgatcacctctgttcagtc	4	16	5	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139942168	A	A	139942168	1	1	113	0	1	0	0	0	0	0	0	0	764	696	24	2		2	APBB3	5	139942168	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2348739	139942168	40973092	281	107647											
PCDHAC2	56134	broad.mit.edu	37	chr5	140346519	140346519	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagcaggcacccggcgcGctcgtgggcaacgtggctcg	18	13	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140346519	A	A	140346519	2	1	113	1	0	0	0	0	0	0	0	1	11627	1074	38	4		4	PCDHAC2	5	140346519	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	404351	140346519	40568741	282	107648											
PCDHB7	56129	broad.mit.edu	37	chr5	140554394	140554394	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggccaccgccacgctgcacGtgctcctggtggacggcttc	13	17	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140554394	C	C	140554394	3	2	113	1	0	0	0	0	1	0	0	0	11641	1145	40	4	1980	4	PCDHB7	5	140554394	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	207875	140554394	40360866	283	107649											
PCDHB16	57717	broad.mit.edu	37	chr5	140562928	140562928	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccctggttgccaccgtctCcgccagggatttagacggcg	12	15	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140562928	G	G	140562928	3	3	113	1	0	0	0	0	1	0	0	0	11635	855	30	4	796	4	PCDHB16	5	140562928	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	8534	140562928	40352332	284	107650											
CSF1R	1436	broad.mit.edu	37	chr5	149453163	149453163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgagcagctatgtcaCaggtacatagtccccaccac	8	15	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149453163	A	A	149453163	1	1	113	0	1	0	0	0	0	0	0	0	3966	493	17	3		3	CSF1R	5	149453163	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	8890235	149453163	31462097	285	107651											
PDGFRB	5159	broad.mit.edu	37	chr5	149503795	149503795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttccctgaggcctctgGggcagtgggctcggtacctc	13	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149503795	T	T	149503795	1	4	113	0	1	0	0	0	0	0	0	0	11756	1247	43	2		2	PDGFRB	5	149503795	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	50632	149503795	31411465	286	107652											
SPARC	6678	broad.mit.edu	37	chr5	151042996	151042996	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattttcatttttagcaccGttaatgtattcacttaaatc	4	7	2	0	rs147077348	by1000genomes	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151042996	A	A	151042996	1	1	113	0	1	0	0	0	0	0	0	0	15111	1160	40	4		4	SPARC	5	151042996	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	1539201	151042996	29872264	287	107653											
ADAM19	8728	broad.mit.edu	37	chr5	156991273	156991273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaccaaggactgagaGcttggggtcactccattgac	11	9	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156991273	T	T	156991273	1	4	113	0	1	0	0	0	0	0	0	0	240	986	34	3		3	ADAM19	5	156991273	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5948277	156991273	23923987	288	107654											
ADRA1B	147	broad.mit.edu	37	chr5	159377796	159377796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccatgactgacacgttggTgatgtggacacagaagccca	12	10	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159377796	A	A	159377796	1	1	113	0	1	0	0	0	0	0	0	0	335	1711	59	5		5	ADRA1B	5	159377796	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	2386523	159377796	21537464	289	107655											
DOCK2	1794	broad.mit.edu	37	chr5	169506137	169506137	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagaaagcagctgcagagtCggacctgaagcgggtgagtg	17	7	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169506137	A	A	169506137	4	1	113	1	0	0	0	0	0	1	0	0	4727	893	31	3	5347	3	DOCK2	5	169506137	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	10128341	169506137	11409123	290	107656											
NSD1	64324	broad.mit.edu	37	chr5	176709317	176709317	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattatcaaatagttggggAtcgtaaagtaattatgtgtg	10	3	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176709317	G	G	176709317	1	3	113	0	1	0	0	0	0	0	0	0	10764	348	12	5		5	NSD1	5	176709317	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	7203180	176709317	4205943	291	107657											
DDX41	51428	broad.mit.edu	37	chr5	176939771	176939771	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccaagccagtgcttgcaCcaccctgacctttgccccca	8	18	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176939771	T	T	176939771	1	4	113	0	1	0	0	0	0	0	0	0	4394	522	18	4		4	DDX41	5	176939771	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	230454	176939771	3975489	292	107658											
IRF4	3662	broad.mit.edu	37	chr6	396878	396878	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgccagtgcttcctatctcAgcctctcctgcactccttta	5	16	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	396878	T	T	396878	1	4	113	0	1	0	0	0	0	0	0	0	7902	203	7	5		5	IRF4	6	396878	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08		396878	170718189	293	107659											
LY86	9450	broad.mit.edu	37	chr6	6626683	6626683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcttgctcactgctggCaggggcctgcagagagataa	13	10	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6626683	A	A	6626683	1	1	113	0	1	0	0	0	0	0	0	0	9188	725	25	3		3	LY86	6	6626683	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	6229805	6626683	164488384	294	107660											
SNRNP48	154007	broad.mit.edu	37	chr6	7594075	7594075	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatgggctataccaaagaaGaagaggtaccatatatttac	8	6	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7594075	T	T	7594075	4	4	113	1	0	0	0	0	0	1	0	0	14971	943	33	3	271	3	SNRNP48	6	7594075	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	967392	7594075	163520992	295	107661											
BTN2A2	10385	broad.mit.edu	37	chr6	26390122	26390122	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccatctaaggtttctgaggGagaagccaacagaacaggtg	12	8	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26390122	T	T	26390122	1	4	113	0	1	0	0	0	0	0	0	0	1571	1189	41	3		3	BTN2A2	6	26390122	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	18796047	26390122	144724945	296	107662											
BTN2A1	11120	broad.mit.edu	37	chr6	26468562	26468562	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggcgtcttcctggactatGaagctggagatgtctccttc	12	10	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26468562	A	A	26468562	3	1	113	1	0	0	0	0	1	0	0	0	1570	1291	45	4	1422	4	BTN2A1	6	26468562	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	78440	26468562	144646505	297	107663											
HIST1H3J	8356	broad.mit.edu	37	chr6	27858239	27858239	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgcttggcgtgaatagcaCagaggttggtgtcttcaaag	13	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27858239	G	G	27858239	3	3	113	1	0	0	0	0	1	0	0	0	7231	478	17	4	82	4	HIST1H3J	6	27858239	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1389677	27858239	143256828	298	107664											
LST1	7940	broad.mit.edu	37	chr6	31555160	31555160	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttaggaagtgatggggaaCagtgatgtatgcagctcatg	15	5	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31555160	G	G	31555160	1	3	113	0	1	0	0	0	0	0	0	0	9154	493	17	4		4	LST1	6	31555160	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3696921	31555160	139559907	299	107665											
C6orf27	80737	broad.mit.edu	37	chr6	31740879	31740879	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacaaagctcaggctggaGgctggggtgatgtccagcag	17	8	1	1	rs146780305	byFrequency	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31740879	A	A	31740879	2	1	113	1	0	0	0	0	0	0	0	1	2385	987	35	4		4	C6orf27	6	31740879	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	185719	31740879	139374188	300	107666											
VARS	7407	broad.mit.edu	37	chr6	31748466	31748466	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggagtggctgggagggacGctttgggggccataccctgg	19	8	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31748466	A	A	31748466	1	1	113	0	1	0	0	0	0	0	0	0	17250	1102	38	4		4	VARS	6	31748466	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	7587	31748466	139366601	301	107667											
NOTCH4	4855	broad.mit.edu	37	chr6	32184741	32184741	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgtgaaaccagaggggcaGaggcaaaagaaggctcctgg	15	9	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32184741	T	T	32184741	2	4	113	1	0	0	0	0	0	0	0	1	10646	929	33	3		3	NOTCH4	6	32184741	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	436275	32184741	138930326	302	107668											
COL11A2	1302	broad.mit.edu	37	chr6	33145298	33145298	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggagatagaacacatttaGagcatggagctgagtcccag	12	7	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33145298	C	C	33145298	1	2	113	0	1	0	0	0	0	0	0	0	3700	957	33	4		4	COL11A2	6	33145298	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	960557	33145298	137969769	303	107669											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34801976	34801976	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccataattctgattgttggtCtacctcatttgttgtagtga	8	7	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34801976	T	T	34801976	1	4	113	0	1	0	0	0	0	0	0	0	17094	928	32	4		4	UHRF1BP1	6	34801976	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1656678	34801976	136313091	304	107670											
DAAM2	23500	broad.mit.edu	37	chr6	39846148	39846148	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attactcacattctctccttCtgtttcctctcccgtcccac	2	18	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39846148	G	G	39846148	1	3	113	0	1	0	0	0	0	0	0	0	4249	928	32	4		4	DAAM2	6	39846148	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	5044172	39846148	131268919	305	107671											
C6orf138	442213	broad.mit.edu	37	chr6	47976742	47976742	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagccataggtctggaGgtagtaggtgatttgaatgg	17	4	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47976742	A	A	47976742	3	1	113	1	0	0	0	0	1	0	0	0	2355	1000	35	4	2013	4	C6orf138	6	47976742	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	8130594	47976742	123138325	306	107672											
TFAP2B	7021	broad.mit.edu	37	chr6	50796436	50796436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagcaaagttctctcatgCattaacgtctttatgatgaa	7	7	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50796436	A	A	50796436	1	1	113	0	1	0	0	0	0	0	0	0	15911	725	25	3		3	TFAP2B	6	50796436	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2819694	50796436	120318631	307	107673											
PKHD1	5314	broad.mit.edu	37	chr6	51768419	51768419	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataacattggtgggactgcaGatatagatgccagatggtgt	13	5	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51768419	C	C	51768419	3	2	113	1	0	0	0	0	1	0	0	0	12066	932	33	4	5391	4	PKHD1	6	51768419	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	971983	51768419	119346648	308	107674											
FAM83B	222584	broad.mit.edu	37	chr6	54805781	54805781	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcccgttatttgacaactCaaaagccaacttagatcctg	5	11	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54805781	A	A	54805781	4	1	113	1	0	0	0	0	0	1	0	0	5687	838	29	3	2026	3	FAM83B	6	54805781	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3037362	54805781	116309286	309	107675											
HCRTR2	3062	broad.mit.edu	37	chr6	55039688	55039688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggctctaaagagacccCtccctcccccgggaagcaaa	9	15	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55039688	A	A	55039688	1	1	113	0	1	0	0	0	0	0	0	0	7069	696	24	2		2	HCRTR2	6	55039688	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	233907	55039688	116075379	310	107676											
GFRAL	389400	broad.mit.edu	37	chr6	55223728	55223728	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaaatgctggcagcgtgtGactagaaagtgccatgaaga	12	7	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55223728	A	A	55223728	2	1	113	1	0	0	0	0	0	0	0	1	6415	1277	45	4		4	GFRAL	6	55223728	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	184040	55223728	115891339	311	107677											
KHDRBS2	202559	broad.mit.edu	37	chr6	62757662	62757662	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaaagtgacacagggtgatCccaggaaatggaaatcatag	12	6	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62757662	G	G	62757662	1	3	113	0	1	0	0	0	0	0	0	0	8217	870	30	4		4	KHDRBS2	6	62757662	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	7533934	62757662	108357405	312	107678											
BAI3	577	broad.mit.edu	37	chr6	69349249	69349249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaatgagcagacagagGgctgcctgacccaggagctg	14	12	0	5			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69349249	T	T	69349249	3	4	113	1	0	0	0	0	1	0	0	0	1305	1232	43	2	684	2	BAI3	6	69349249	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6591587	69349249	101765818	313	107679											
RIMS1	22999	broad.mit.edu	37	chr6	73026494	73026494	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccagttgacggtagacacTggggacagtaggtgggtggt	19	6	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73026494	G	G	73026494	1	3	113	0	1	0	0	0	0	0	0	0	13478	1595	55	5		5	RIMS1	6	73026494	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	3677245	73026494	98088573	314	107680											
KCNQ5	56479	broad.mit.edu	37	chr6	73867320	73867320	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctggcatggagggcggcGgcaacggtagtggcagctgg	19	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73867320	A	A	73867320	1	1	113	0	1	0	0	0	0	0	0	0	8156	1131	39	4		4	KCNQ5	6	73867320	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	840826	73867320	97247747	315	107681											
PDSS2	57107	broad.mit.edu	37	chr6	107531724	107531724	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgagtttagattaaaagtCatggagtcactggtcttttc	10	6	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107531724	G	G	107531724	3	3	113	1	0	0	0	0	1	0	0	0	11788	826	29	4	284	4	PDSS2	6	107531724	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	33664404	107531724	63583343	316	107682											
CLVS2	134829	broad.mit.edu	37	chr6	123384698	123384698	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacatccacaattcataaaTttcttgatatagaggaaggg	7	7	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123384698	A	A	123384698	1	1	113	0	1	0	0	0	0	0	0	0	3604	1508	52	5		5	CLVS2	6	123384698	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	15852974	123384698	47730369	317	107683											
ENPP1	5167	broad.mit.edu	37	chr6	132203406	132203406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcataattttatgatgtaGttcacctttaaatattaata	3	5	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132203406	T	T	132203406	1	4	113	0	1	0	0	0	0	0	0	0	5171	1044	36	3		3	ENPP1	6	132203406	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	8818708	132203406	38911661	318	107684											
AHI1	54806	broad.mit.edu	37	chr6	135611635	135611635	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattatgtgtccttggtcctCatggctctgttcttttctca	7	11	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135611635	T	T	135611635	3	4	113	1	0	0	0	0	1	0	0	0	413	835	29	4	84	4	AHI1	6	135611635	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3408229	135611635	35503432	319	107685											
PEX7	5191	broad.mit.edu	37	chr6	137187736	137187736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattcaagtggtgtgatgGgaaatgatcaagtcttcctt	10	7	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137187736	T	T	137187736	1	4	113	0	1	0	0	0	0	0	0	0	11846	1247	43	2		2	PEX7	6	137187736	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1576101	137187736	33927331	320	107686											
CCDC28A	25901	broad.mit.edu	37	chr6	139106400	139106400	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacagatggaacatgttcGgggaatgcaggagaaattag	14	4	0	3	rs143442772		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139106400	A	A	139106400	3	1	113	1	0	0	0	0	1	0	0	0	2829	1116	39	4	643	4	CCDC28A	6	139106400	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1918664	139106400	32008667	321	107687											
UTRN	7402	broad.mit.edu	37	chr6	144745117	144745117	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttttgttttgtcttAataggtggaattagtgaata	9	1	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144745117	T	T	144745117	1	4	113	0	1	0	0	0	0	0	0	0	17230	377	13	5		5	UTRN	6	144745117	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	5638717	144745117	26369950	322	107688											
CNKSR3	154043	broad.mit.edu	37	chr6	154732033	154732033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggaggagaagtcaaggCcaacggcagaacaaaacaaa	14	8	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154732033	A	A	154732033	1	1	113	0	1	0	0	0	0	0	0	0	3640	754	26	3		3	CNKSR3	6	154732033	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	9986916	154732033	16383034	323	107689											
C6orf35	729515	broad.mit.edu	37	chr6	157731874	157731874	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acccggcctcatcatagtgtCccagtgtgcactcacctagc	8	16	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157731874	G	G	157731874	1	3	113	0	1	0	0	0	0	0	0	0	2386	870	30	4		4	C6orf35	6	157731874	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2999841	157731874	13383193	324	107690											
FNDC1	84624	broad.mit.edu	37	chr6	159635923	159635923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacctcatgtgcatgatgGcaaactctaagtggtctact	9	9	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159635923	A	A	159635923	1	1	113	0	1	0	0	0	0	0	0	0	6026	1218	42	4		4	FNDC1	6	159635923	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1904049	159635923	11479144	325	107691											
FNDC1	84624	broad.mit.edu	37	chr6	159654335	159654335	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcccagagaaccccaaaTccacaggggcagatacacat	7	15	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159654335	A	A	159654335	3	1	113	1	0	0	0	0	1	0	0	0	6026	1435	50	5	2833	5	FNDC1	6	159654335	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	18412	159654335	11460732	326	107692											
PDE10A	10846	broad.mit.edu	37	chr6	165827162	165827162	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcgtggtgtagcctgtgtAcaagtctacttctctgtggg	13	10	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165827162	T	T	165827162	3	4	113	1	0	0	0	0	1	0	0	0	11724	391	14	5	1304	5	PDE10A	6	165827162	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	6172827	165827162	5287905	327	107693											
WIPI2	26100	broad.mit.edu	37	chr7	5256877	5256877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctttttcctgaagaggaGcactgtggtgtccctggcat	13	9	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5256877	T	T	5256877	1	4	113	0	1	0	0	0	0	0	0	0	17498	986	34	3		3	WIPI2	7	5256877	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08		5256877	153881786	328	107694											
HOXA5	3202	broad.mit.edu	37	chr7	27182747	27182747	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcggctcgctctgcgcactCgcctgctcgctgctggcagg	13	17	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27182747	T	T	27182747	2	4	113	1	0	0	0	0	0	0	0	1	7362	871	31	4		4	HOXA5	7	27182747	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	21925870	27182747	131955916	329	107695											
EVX1	2128	broad.mit.edu	37	chr7	27284629	27284629	+	Intron	DEL	G	-	-													tcaatggcgtttgtgtgtctGtgtctgtacacgcctgtgct							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27284629	-	-	27284629	6	5	113	0	1	1	0	1	0	0	0	0	5336	1392	48	0		0	EVX1	7	27284629	Intron	DEL	G	TCGA-44-2668-01A-01W-0928-08	101882	27284629	131854034	330	107696											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31121311	31121311	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcattttgatatatgcctAtgtctgtatttttcaggaga	9	5	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31121311	T	T	31121311	1	4	113	0	1	0	0	0	0	0	0	0	303	464	16	5		5	ADCYAP1R1	7	31121311	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	3836682	31121311	128017352	331	107697											
DDC	1644	broad.mit.edu	37	chr7	50560624	50560624	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggcaggcactccacgtcccGaaaggctcaactccttctca	8	17	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50560624	A	A	50560624	1	1	113	0	1	0	0	0	0	0	0	0	4358	1073	37	4		4	DDC	7	50560624	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	19439313	50560624	108578039	332	107698											
COBL	23242	broad.mit.edu	37	chr7	51096323	51096323	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctagggggttccggccctCatggtgggcagacttctgct	14	13	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51096323	T	T	51096323	3	4	113	1	0	0	0	0	1	0	0	0	3685	835	29	4	1331	4	COBL	7	51096323	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	535699	51096323	108042340	333	107699											
EGFR	1956	broad.mit.edu	37	chr7	55232939	55232939	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaagagaaaagaaagagAcatgcatgaacatttttctc	8	5	1	5			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55232939	T	T	55232939	1	4	113	0	1	0	0	0	0	0	0	0	5007	290	10	5		5	EGFR	7	55232939	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	4136616	55232939	103905724	334	107700											
ZNF479	90827	broad.mit.edu	37	chr7	57188289	57188289	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagtgctgaggagcgcctaAaggcttggccacattcttca	11	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188289	T	T	57188289	3	4	113	1	0	0	0	0	1	0	0	0	18060	14	1	5	745	5	ZNF479	7	57188289	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	1955350	57188289	101950374	335	107701											
LIMK1	3984	broad.mit.edu	37	chr7	73530111	73530111	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaggatcgggtcccagcatGacccggcttcaccttcccag	10	16	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73530111	T	T	73530111	1	4	113	0	1	0	0	0	0	0	0	0	8873	1305	45	3		3	LIMK1	7	73530111	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	16341822	73530111	85608552	336	107702											
SAMD9L	219285	broad.mit.edu	37	chr7	92765125	92765125	+	Frame_Shift_Del	DEL	C	-	-													tagccccatttctacaaggtCcttctcagttaattcctgca							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92765125	-	-	92765125	7	5	113	1	0	1	0	1	0	0	0	0	13938	855	30	0	4598	0	SAMD9L	7	92765125	Frame_Shift_Del	DEL	C	TCGA-44-2668-01A-01W-0928-08	19235014	92765125	66373538	337	107703											
RELN	5649	broad.mit.edu	37	chr7	103294529	103294529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctatttgccacacagactGgcatgtgtaccttatatgag	9	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103294529	T	T	103294529	1	4	113	0	1	0	0	0	0	0	0	0	13328	1363	47	2		2	RELN	7	103294529	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	10529404	103294529	55844134	338	107704											
COG5	10466	broad.mit.edu	37	chr7	107013135	107013135	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaatatccatccacaacaCtggtaatagtatccttcaaa	3	12	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107013135	T	T	107013135	3	4	113	1	0	0	0	0	1	0	0	0	3693	565	20	4	1813	4	COG5	7	107013135	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3718606	107013135	52125528	339	107705											
C7orf66	154907	broad.mit.edu	37	chr7	108524469	108524469	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaagaaaaaaAgaattcccaccttacctgaa	3	7	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108524469	G	G	108524469	1	3	113	0	1	0	0	0	0	0	0	0	2437	87	3	5		5	C7orf66	7	108524469	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1511334	108524469	50614194	340	107706											
TMEM168	64418	broad.mit.edu	37	chr7	112424746	112424746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacctaagcatatagcaacCaataaattgattctggctaa	6	8	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112424746	A	A	112424746	3	1	113	1	0	0	0	0	1	0	0	0	16206	593	21	2	1974	2	TMEM168	7	112424746	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3900277	112424746	46713917	341	107707											
FOXP2	93986	broad.mit.edu	37	chr7	114284743	114284743	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcttttgctacagctcGtcacatgaggagactggggc	13	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114284743	T	T	114284743	2	4	113	1	0	0	0	0	0	0	0	1	6087	1132	40	3		3	FOXP2	7	114284743	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1859997	114284743	44853920	342	107708											
PTPRZ1	5803	broad.mit.edu	37	chr7	121608168	121608168	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaaacacattcattcaTaacactgggaaaacaggtaa	7	7	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121608168	C	C	121608168	2	2	113	1	0	0	0	0	0	0	0	1	12922	1403	49	5		5	PTPRZ1	7	121608168	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	7323425	121608168	37530495	343	107709											
TAS2R16	50833	broad.mit.edu	37	chr7	122634999	122634999	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaacacaataaataagacGgcaagggacctcagggcagt	11	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122634999	A	A	122634999	2	1	113	1	0	0	0	0	0	0	0	1	15688	1103	39	4		4	TAS2R16	7	122634999	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1026831	122634999	36503664	344	107710											
POT1	25913	broad.mit.edu	37	chr7	124475408	124475408	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggtcttcgtggccagatCtcacaggaattacactatta	8	11	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124475408	G	G	124475408	3	3	113	1	0	0	0	0	1	0	0	0	12355	913	32	4	494	4	POT1	7	124475408	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1840409	124475408	34663255	345	107711											
PAX4	5078	broad.mit.edu	37	chr7	127253901	127253901	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccggggagtctcagagccActatggggagtgaggacagc	16	11	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127253901	T	T	127253901	3	4	113	1	0	0	0	0	1	0	0	0	11575	156	6	5	608	5	PAX4	7	127253901	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2778493	127253901	31884762	346	107712											
IRF5	3663	broad.mit.edu	37	chr7	128588454	128588454	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggctaggcccttgccccAggctggaggctcagggctcc	16	14	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128588454	G	G	128588454	1	3	113	0	1	0	0	0	0	0	0	0	7903	203	7	5		5	IRF5	7	128588454	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1334553	128588454	30550209	347	107713											
PLXNA4	91584	broad.mit.edu	37	chr7	131844509	131844509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctctccaggatgggctaGggaggagtagggtggctcca	16	9	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131844509	T	T	131844509	1	4	113	0	1	0	0	0	0	0	0	0	12217	1015	35	2		2	PLXNA4	7	131844509	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3256055	131844509	27294154	348	107714											
DGKI	9162	broad.mit.edu	37	chr7	137257503	137257503	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaggaaacaatacaaacaGagcctacctgggtatattta	7	9	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137257503	T	T	137257503	1	4	113	0	1	0	0	0	0	0	0	0	4511	957	33	3		3	DGKI	7	137257503	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5412994	137257503	21881160	349	107715											
DGKI	9162	broad.mit.edu	37	chr7	137308320	137308320	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgggatattagaacaagaGacagataatttaaaaccacc	7	8	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137308320	T	T	137308320	1	4	113	0	1	0	0	0	0	0	0	0	4511	957	33	3		3	DGKI	7	137308320	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	50817	137308320	21830343	350	107716											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138745860	138745860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacatccttttgagttttgGaagctatgtttgtctgaatc	9	6	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138745860	T	T	138745860	3	4	113	1	0	0	0	0	1	0	0	0	17701	1174	41	3	714	3	ZC3HAV1	7	138745860	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1437540	138745860	20392803	351	107717											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138764850	138764850	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccagggaagccctgtggctGatctgatctggactaggtgt	14	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138764850	C	C	138764850	3	2	113	1	0	0	0	0	1	0	0	0	17701	1280	45	4	1915	4	ZC3HAV1	7	138764850	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	18990	138764850	20373813	352	107718											
HIPK2	28996	broad.mit.edu	37	chr7	139259969	139259969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctccctgaagagtgacCgctggtggaggtcacgttgc	15	10	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139259969	A	A	139259969	3	1	113	1	0	0	0	0	1	0	0	0	7184	652	23	1	573	1	HIPK2	7	139259969	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	495119	139259969	19878694	353	107719											
MGAM	8972	broad.mit.edu	37	chr7	141708386	141708386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacaactggtaccacacatGctaggacaacgggtccccca	9	14	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141708386	A	A	141708386	3	1	113	1	0	0	0	0	1	0	0	0	9634	1319	46	4	214	4	MGAM	7	141708386	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2448417	141708386	17430277	354	107720											
MGAM	8972	broad.mit.edu	37	chr7	141796109	141796109	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctctgttgggctctgttggGcaccttcatttccctttcca	9	13	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141796109	C	C	141796109	1	2	113	0	1	0	0	0	0	0	0	0	9634	1218	42	4		4	MGAM	7	141796109	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	87723	141796109	17342554	355	107721											
OR6V1	346517	broad.mit.edu	37	chr7	142749605	142749605	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacacccacctacatacaccCatgtacttcttcctgggcaa	5	16	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142749605	G	G	142749605	2	3	113	1	0	0	0	0	0	0	0	1	11305	581	21	4		4	OR6V1	7	142749605	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	953496	142749605	16389058	356	107722											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741088	146741088	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgcgcatagtgcctctGgattggaatggagaaggtcg	15	6	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146741088	T	T	146741088	2	4	113	1	0	0	0	0	0	0	0	1	3679	1335	47	2		2	CNTNAP2	7	146741088	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	3991483	146741088	12397575	357	107723											
CNTNAP2	26047	broad.mit.edu	37	chr7	146825920	146825920	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaagaaattagagcccTcaaatgtggtaaggattttc	11	5	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146825920	G	G	146825920	3	3	113	1	0	0	0	0	1	0	0	0	3679	1551	54	5	1101	5	CNTNAP2	7	146825920	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	84832	146825920	12312743	358	107724											
KRBA1	84626	broad.mit.edu	37	chr7	149419947	149419947	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccttgtgcctgggccccgGcaccccgagacatccccaag	10	18	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149419947	T	T	149419947	2	4	113	1	0	0	0	0	0	0	0	1	8510	1190	42	3		3	KRBA1	7	149419947	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	2594027	149419947	9718716	359	107725											
GIMAP8	155038	broad.mit.edu	37	chr7	150164231	150164231	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttgctgcaagatttcattGaaaaaaacaaacctctcaag	5	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150164231	A	A	150164231	3	1	113	1	0	0	0	0	1	0	0	0	6449	1291	45	4	447	4	GIMAP8	7	150164231	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	744284	150164231	8974432	360	107726											
DPP6	1804	broad.mit.edu	37	chr7	154684104	154684104	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaacagcatctgtaccggTccatcatcaacttcttcgtg	6	13	5	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154684104	A	A	154684104	3	1	113	1	0	0	0	0	1	0	0	0	4770	1667	58	5	2730	5	DPP6	7	154684104	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	4519873	154684104	4454559	361	107727											
DNAJB6	10049	broad.mit.edu	37	chr7	157208654	157208654	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttagaaaacatgtttggctCttgctggggaagcagtgctg	13	6	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157208654	T	T	157208654	1	4	113	0	1	0	0	0	0	0	0	0	4664	928	32	4		4	DNAJB6	7	157208654	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2524550	157208654	1930009	362	107728											
DLGAP2	9228	broad.mit.edu	37	chr8	1497613	1497613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctaccccgacgcgctgCagagccccttcggggacctg	12	17	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1497613	A	A	1497613	3	1	113	1	0	0	0	0	1	0	0	0	4600	711	25	3	756	3	DLGAP2	8	1497613	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08		1497613	144866409	363	107729											
DLGAP2	9228	broad.mit.edu	37	chr8	1513959	1513959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatgggggacgaggagagCggagagtcagactccagccc	17	11	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1513959	A	A	1513959	3	1	113	1	0	0	0	0	1	0	0	0	4600	767	27	3	1107	3	DLGAP2	8	1513959	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	16346	1513959	144850063	364	107730											
C8orf79	57604	broad.mit.edu	37	chr8	12864024	12864024	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcatgaaataccttccattGagcctttgcttttcacattg	6	10	1	2	rs148152224	by1000genomes	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12864024	A	A	12864024	1	1	113	0	1	0	0	0	0	0	0	0	2464	1305	45	4		4	C8orf79	8	12864024	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	11350065	12864024	133499998	365	107731											
LPL	4023	broad.mit.edu	37	chr8	19818481	19818481	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagatattggagaactactCatgttgaagctcaaatggaa	10	5	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19818481	G	G	19818481	2	3	113	1	0	0	0	0	0	0	0	1	9008	813	29	4		4	LPL	8	19818481	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	6954457	19818481	126545541	366	107732											
PPP2R2A	5520	broad.mit.edu	37	chr8	26220330	26220330	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actattcggctatgtgacatGagggcatctgccctctgtga	11	10	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26220330	A	A	26220330	3	1	113	1	0	0	0	0	1	0	0	0	12485	1290	45	4	835	4	PPP2R2A	8	26220330	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6401849	26220330	120143692	367	107733											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37735071	37735071	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatttcaacttataccaccTgaaaggagaaaggctgagga	11	7	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37735071	G	G	37735071	5	3	113	1	0	0	0	0	0	0	1	0	13001	1594	55	5	3501	5	RAB11FIP1	8	37735071	Splice_Site	SNP	T	TCGA-44-2668-01A-01W-0928-08	11514741	37735071	108628951	368	107734											
SGK196	84197	broad.mit.edu	37	chr8	42977158	42977158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaatttctgtatcttctgcAgaacacctgccacttaaaag	5	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42977158	G	G	42977158	1	3	113	0	1	0	0	0	0	0	0	0	14321	203	7	5		5	SGK196	8	42977158	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	5242087	42977158	103386864	369	107735											
ATP6V1H	51606	broad.mit.edu	37	chr8	54727361	54727361	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagatacatttaacgcaacaTtaattctaaaaatcacatca	3	8	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54727361	G	G	54727361	1	3	113	0	1	0	0	0	0	0	0	0	1193	1508	52	5		5	ATP6V1H	8	54727361	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	11750203	54727361	91636661	370	107736											
RGS20	8601	broad.mit.edu	37	chr8	54859271	54859271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcccacaatagcttccCacgaactcagagcagatctt	8	13	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54859271	A	A	54859271	3	1	113	1	0	0	0	0	1	0	0	0	13412	594	21	2	793	2	RGS20	8	54859271	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	131910	54859271	91504751	371	107737											
RALYL	138046	broad.mit.edu	37	chr8	85774568	85774568	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgtgcctccacctcccCgtgcagtaattccgctgaag	11	15	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85774568	G	G	85774568	3	3	113	1	0	0	0	0	1	0	0	0	13128	652	23	4	512	4	RALYL	8	85774568	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	30915297	85774568	60589454	372	107738											
RALYL	138046	broad.mit.edu	37	chr8	85774709	85774709	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtaatgtccttcatttTatttctctttaaagaaggga	7	5	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85774709	C	C	85774709	1	2	113	0	1	0	0	0	0	0	0	0	13128	1769	61	5		5	RALYL	8	85774709	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	141	85774709	60589313	373	107739											
MMP16	4325	broad.mit.edu	37	chr8	89053922	89053922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgttggtccatcacagcCcataaaatccttgaggatgg	10	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89053922	A	A	89053922	3	1	113	1	0	0	0	0	1	0	0	0	9748	623	22	2	236	2	MMP16	8	89053922	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3279213	89053922	57310100	374	107740											
MMP16	4325	broad.mit.edu	37	chr8	89131071	89131071	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccagttcatggactgcTacaagaaataagtcatttcc	7	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89131071	A	A	89131071	2	1	113	1	0	0	0	0	0	0	0	1	9748	1509	53	5		5	MMP16	8	89131071	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	77149	89131071	57232951	375	107741											
KIAA1429	25962	broad.mit.edu	37	chr8	95504896	95504896	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttgacgttataaaggTctcatgcttgtgcttcccaa	7	10	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95504896	C	C	95504896	3	2	113	1	0	0	0	0	1	0	0	0	8301	1667	58	5	662	5	KIAA1429	8	95504896	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	6373825	95504896	50859126	376	107742											
TP53INP1	94241	broad.mit.edu	37	chr8	95952305	95952305	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattggacatgactcaaactGgagaaagcaggaatcacttg	10	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95952305	C	C	95952305	3	2	113	1	0	0	0	0	1	0	0	0	16512	1357	47	4	500	4	TP53INP1	8	95952305	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	447409	95952305	50411717	377	107743											
LAPTM4B	55353	broad.mit.edu	37	chr8	98831349	98831349	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaatgagatttgctaatgAggcccttttcttttgcagcc	8	8	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98831349	T	T	98831349	1	4	113	0	1	0	0	0	0	0	0	0	8697	319	11	5		5	LAPTM4B	8	98831349	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	2879044	98831349	47532673	378	107744											
VPS13B	157680	broad.mit.edu	37	chr8	100205158	100205158	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatttgaacttccaaatctCacaattcaagctacaagagc	4	10	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100205158	G	G	100205158	2	3	113	1	0	0	0	0	0	0	0	1	17317	813	29	4		4	VPS13B	8	100205158	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	1373809	100205158	46158864	379	107745											
VPS13B	157680	broad.mit.edu	37	chr8	100709121	100709121	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacaacttctgcggttccAgctcaccatgtgactgcgct	8	14	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100709121	G	G	100709121	1	3	113	0	1	0	0	0	0	0	0	0	17317	203	7	5		5	VPS13B	8	100709121	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	503963	100709121	45654901	380	107746											
ZFPM2	23414	broad.mit.edu	37	chr8	106814500	106814500	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaaagtgcctgccatgcaGagaaccatgcgcacacgcaa	9	13	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106814500	C	C	106814500	3	2	113	1	0	0	0	0	1	0	0	0	17784	933	33	4	2220	4	ZFPM2	8	106814500	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6105379	106814500	39549522	381	107747											
NUDCD1	84955	broad.mit.edu	37	chr8	110334668	110334668	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttccagtgtatattgatcaTctcgaagttttacctctgcc	7	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110334668	C	C	110334668	3	2	113	1	0	0	0	0	1	0	0	0	10817	1435	50	5	1644	5	NUDCD1	8	110334668	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	3520168	110334668	36029354	382	107748											
PKHD1L1	93035	broad.mit.edu	37	chr8	110396316	110396316	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcaaaaagttttagaacCccaacaataagaagcatcac	6	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110396316	T	T	110396316	2	4	113	1	0	0	0	0	0	0	0	1	12067	610	22	4		4	PKHD1L1	8	110396316	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	61648	110396316	35967706	383	107749											
PKHD1L1	93035	broad.mit.edu	37	chr8	110439382	110439382	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcggaaagcagaatcttctAcaggttccctcatttggctt	9	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110439382	G	G	110439382	2	3	113	1	0	0	0	0	0	0	0	1	12067	378	14	5		5	PKHD1L1	8	110439382	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	43066	110439382	35924640	384	107750											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477365	110477365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtaatgacagatgtggGggttggagtgcaaagtttgt	16	2	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110477365	T	T	110477365	2	4	113	1	0	0	0	0	0	0	0	1	12067	1219	43	2		2	PKHD1L1	8	110477365	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	37983	110477365	35886657	385	107751											
KCNV1	27012	broad.mit.edu	37	chr8	110984410	110984410	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatatcagttcagcgttaCtttccttgtactgtggtcaa	8	8	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110984410	T	T	110984410	1	4	113	0	1	0	0	0	0	0	0	0	8164	580	20	4		4	KCNV1	8	110984410	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	507045	110984410	35379612	386	107752											
CSMD3	114788	broad.mit.edu	37	chr8	113304844	113304844	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcccttgcataagataccCaatattgcatgagaatgtta	8	8	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113304844	G	G	113304844	3	3	113	1	0	0	0	0	1	0	0	0	3980	594	21	4	2481	4	CSMD3	8	113304844	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2320434	113304844	33059178	387	107753											
CSMD3	114788	broad.mit.edu	37	chr8	113358492	113358492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtagaggaataatttaCtgtattaaaaaacatattaa	6	3	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113358492	A	A	113358492	1	1	113	0	1	0	0	0	0	0	0	0	3980	580	20	3		3	CSMD3	8	113358492	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	53648	113358492	33005530	388	107754											
CSMD3	114788	broad.mit.edu	37	chr8	113988108	113988108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttagttctttctatctGttcagcatgtcttggtcttc	6	10	7	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113988108	T	T	113988108	3	4	113	1	0	0	0	0	1	0	0	0	3980	1386	48	3	10083	3	CSMD3	8	113988108	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	629616	113988108	32375914	389	107755											
CSMD3	114788	broad.mit.edu	37	chr8	114111142	114111142	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcattaggaaaactagggcTggatatgatgccactggatc	11	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114111142	A	A	114111142	3	1	113	1	0	0	0	0	1	0	0	0	3980	1580	55	5	10631	5	CSMD3	8	114111142	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	123034	114111142	32252880	390	107756											
DERL1	79139	broad.mit.edu	37	chr8	124033690	124033690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctaatatcacttacgagCctccgatgatatagttgaat	6	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124033690	A	A	124033690	3	1	113	1	0	0	0	0	1	0	0	0	4486	739	26	3	264	3	DERL1	8	124033690	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	9922548	124033690	22330332	391	107757											
FER1L6	654463	broad.mit.edu	37	chr8	124985647	124985647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcctcaaggtaaatctgcCatactccctgctctctctct	4	15	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124985647	T	T	124985647	1	4	113	0	1	0	0	0	0	0	0	0	5872	609	21	4		4	FER1L6	8	124985647	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	951957	124985647	21378375	392	107758											
LRRC6	23639	broad.mit.edu	37	chr8	133637568	133637568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgtgtctaagagtttcCaatcttgattcaggagtaaa	8	7	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133637568	A	A	133637568	3	1	113	1	0	0	0	0	1	0	0	0	9103	593	21	2	642	2	LRRC6	8	133637568	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	8651921	133637568	12726454	393	107759											
TMEM71	137835	broad.mit.edu	37	chr8	133723298	133723298	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatgcagtatctaatcaCtgcatacccatttgcgcata	7	10	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133723298	T	T	133723298	1	4	113	0	1	0	0	0	0	0	0	0	16323	580	20	4		4	TMEM71	8	133723298	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	85730	133723298	12640724	394	107760											
WISP1	8840	broad.mit.edu	37	chr8	134203506	134203506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacccagctcccttctctaCtgggtcctgctacatggggg	11	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134203506	A	A	134203506	1	1	113	0	1	0	0	0	0	0	0	0	17499	580	20	3		3	WISP1	8	134203506	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	480208	134203506	12160516	395	107761											
FAM135B	51059	broad.mit.edu	37	chr8	139380193	139380193	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaaatttatgtagctctaCcgaaaactcaaccgttcctt	4	10	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139380193	T	T	139380193	3	4	113	1	0	0	0	0	1	0	0	0	5495	507	18	4	4262	4	FAM135B	8	139380193	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	5176687	139380193	6983829	396	107762											
COL22A1	169044	broad.mit.edu	37	chr8	139628254	139628254	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccacttacatcttttcctGgtaacccttcctgaccagga	5	16	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139628254	C	C	139628254	3	2	113	1	0	0	0	0	1	0	0	0	3713	1348	47	4	1010	4	COL22A1	8	139628254	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	248061	139628254	6735768	397	107763											
COL22A1	169044	broad.mit.edu	37	chr8	139767712	139767712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccatgagaagaagacgcGtgtgcctcttacctgttccc	9	14	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139767712	T	T	139767712	1	4	113	0	1	0	0	0	0	0	0	0	3713	1160	40	3		3	COL22A1	8	139767712	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	139458	139767712	6596310	398	107764											
PTK2	5747	broad.mit.edu	37	chr8	141712746	141712746	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggtccaaaagagatgcctGacctggatagatgctgccag	12	9	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141712746	A	A	141712746	4	1	113	1	0	0	0	0	0	1	0	0	12868	1299	45	4	900	4	PTK2	8	141712746	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1945034	141712746	4651276	399	107765											
PTK2	5747	broad.mit.edu	37	chr8	141874393	141874393	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacaaacaaaaaagtatatGaaagcagtctctaatacctg	5	7	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141874393	A	A	141874393	1	1	113	0	1	0	0	0	0	0	0	0	12868	1305	45	4		4	PTK2	8	141874393	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	161647	141874393	4489629	400	107766											
PTPRD	5789	broad.mit.edu	37	chr9	8465591	8465591	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaactcagtgggaaggacatCaaagtgagcggcaatatatg	13	6	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8465591	A	A	8465591	3	1	113	1	0	0	0	0	1	0	0	0	12907	826	29	3	2274	3	PTPRD	9	8465591	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08		8465591	132747840	401	107767											
ACER2	340485	broad.mit.edu	37	chr9	19424744	19424744	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acccttagtttcttgggtcaGatgcttgatgaacttgcagt	10	8	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19424744	T	T	19424744	3	4	113	1	0	0	0	0	1	0	0	0	139	933	33	3	280	3	ACER2	9	19424744	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	10959153	19424744	121788687	402	107768											
TAF1L	138474	broad.mit.edu	37	chr9	32632534	32632534	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttttcagggaaaggcgaCgaaggtctgcatctgttcct	11	9	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32632534	T	T	32632534	3	4	113	1	0	0	0	0	1	0	0	0	15642	536	19	4	2440	4	TAF1L	9	32632534	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	13207790	32632534	108580897	403	107769											
NOL6	65083	broad.mit.edu	37	chr9	33467207	33467207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcccgaatggctccgtcCtggaaacgccgaagctccga	11	15	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33467207	A	A	33467207	3	1	113	1	0	0	0	0	1	0	0	0	10620	680	24	2	1713	2	NOL6	9	33467207	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	834673	33467207	107746224	404	107770											
ZCCHC7	84186	broad.mit.edu	37	chr9	37305738	37305738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgcatataactaatttGtcaggctttggagggagtgt	11	6	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37305738	T	T	37305738	1	4	113	0	1	0	0	0	0	0	0	0	17719	1392	48	3		3	ZCCHC7	9	37305738	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3838531	37305738	103907693	405	107771											
FAM75A5	727905	broad.mit.edu	37	chr9	65508135	65508135	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctctggcagagccttaCctctcagactgtggtttttc	10	11	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65508135	T	T	65508135	5	4	113	1	0	0	0	0	0	0	1	0	5673	521	18	4	11927	4	FAM75A5	9	65508135	Splice_Site	SNP	C	TCGA-44-2668-01A-01W-0928-08	28202397	65508135	75705296	406	107772											
TRPM3	80036	broad.mit.edu	37	chr9	73426112	73426112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctaactggcaactacccCaaaatgaataaaacaagcgg	7	10	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73426112	A	A	73426112	1	1	113	0	1	0	0	0	0	0	0	0	16712	595	21	2		2	TRPM3	9	73426112	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	7917977	73426112	67787319	407	107773											
C9orf64	84267	broad.mit.edu	37	chr9	86559772	86559772	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaagatgagcaagaacctGaggtaatctataatcagcaa	8	8	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86559772	A	A	86559772	4	1	113	1	0	0	0	0	0	1	0	0	2515	1299	45	4	303	4	C9orf64	9	86559772	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	13133660	86559772	54653659	408	107774											
OMD	4958	broad.mit.edu	37	chr9	95179363	95179363	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttccagagatttaggaaGaggaaatggaaattcttcta	9	5	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95179363	T	T	95179363	3	4	113	1	0	0	0	0	1	0	0	0	10959	942	33	3	795	3	OMD	9	95179363	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	8619591	95179363	46034068	409	107775											
PHF2	5253	broad.mit.edu	37	chr9	96425966	96425967	+	Intron	DEL	CA	-	-													acctcgcgcataaccgacatCacacacaccatacatactgc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96425967	-	-	96425966	6	5	113	0	1	1	0	1	0	0	0	0	11925	841	29	0		0	PHF2	9	96425966	Intron	DEL	CA	TCGA-44-2668-01A-01W-0928-08	1246603	96425966	44787465	410	107776											
HIATL1	84641	broad.mit.edu	37	chr9	97200928	97200928	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtgcttgtgttttcatttGatctctctggtaatactgaa	8	6	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97200928	C	C	97200928	1	2	113	0	1	0	0	0	0	0	0	0	7165	1305	45	4		4	HIATL1	9	97200928	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	774962	97200928	44012503	411	107777											
GABBR2	9568	broad.mit.edu	37	chr9	101216375	101216375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggctgctggcatgcagtGtctccatggccctctgcagt	13	14	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101216375	T	T	101216375	3	4	113	1	0	0	0	0	1	0	0	0	6216	1377	48	3	1753	3	GABBR2	9	101216375	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	4015447	101216375	39997056	412	107778											
ALG2	85365	broad.mit.edu	37	chr9	101984539	101984539	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagagaggaccttgcctgCaagtccgggggcggggcctg	18	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101984539	T	T	101984539	1	4	113	0	1	0	0	0	0	0	0	0	519	725	25	4		4	ALG2	9	101984539	5'Flank	SNP	C	TCGA-44-2668-01A-01W-0928-08	768164	101984539	39228892	413	107779											
ABCA1	19	broad.mit.edu	37	chr9	107558537	107558537	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccctccttctgacactGggcaccaaatgccttatcca	6	17	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107558537	A	A	107558537	1	1	113	0	1	0	0	0	0	0	0	0	28	1363	47	4		4	ABCA1	9	107558537	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5573998	107558537	33654894	414	107780											
SLC44A1	23446	broad.mit.edu	37	chr9	108123471	108123471	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttgggtcttttgtctccaGgaggcacaggtgtactatgg	14	7	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108123471	C	C	108123471	5	2	113	1	0	0	0	0	0	0	1	0	14749	1014	35	4	790	4	SLC44A1	9	108123471	Splice_Site	SNP	G	TCGA-44-2668-01A-01W-0928-08	564934	108123471	33089960	415	107781											
SVEP1	79987	broad.mit.edu	37	chr9	113194661	113194662	+	Intron	INS	-	A	A													agttaacaaagcaatgcctcINSaagaacctcaggaatttggg							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113194662	A	A	113194661	6	5	113	0	1	1	1	0	0	0	0	0	15538	841	29	0		0	SVEP1	9	113194661	Intron	INS	-	TCGA-44-2668-01A-01W-0928-08	5071190	113194661	28018770	416	107782											
ROD1	9991	broad.mit.edu	37	chr9	115095039	115095040	+	Intron	DEL	CG	-	-													tttgaaatgcccccgaaaatCgctcgtacatcatattttac							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115095040	-	-	115095039	6	5	113	0	1	1	0	1	0	0	0	0	13630	899	31	0		0	ROD1	9	115095039	Intron	DEL	CG	TCGA-44-2668-01A-01W-0928-08	1900378	115095039	26118392	417	107783											
RGS3	5998	broad.mit.edu	37	chr9	116346655	116346655	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaagaaagagctgggccGcaatggtggctccatgcacc	12	13	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116346655	A	A	116346655	3	1	113	1	0	0	0	0	1	0	0	0	13415	1087	38	4	3294	4	RGS3	9	116346655	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1251616	116346655	24866776	418	107784											
ASTN2	23245	broad.mit.edu	37	chr9	120053826	120053826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgaggcactgggtgagccGtacgcctggccttggtgctc	15	14	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120053826	T	T	120053826	1	4	113	0	1	0	0	0	0	0	0	0	1069	1160	40	3		3	ASTN2	9	120053826	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3707171	120053826	21159605	419	107785											
OR1N1	138883	broad.mit.edu	37	chr9	125289132	125289132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacgatattggtgaggacCcagcacaatgcaagcattag	11	9	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125289132	A	A	125289132	3	1	113	1	0	0	0	0	1	0	0	0	11063	624	22	2	498	2	OR1N1	9	125289132	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	5235306	125289132	15924299	420	107786											
RALGPS1	9649	broad.mit.edu	37	chr9	129957388	129957388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccctctgctggctccgGttctgcgaggttcagccgga	14	13	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129957388	T	T	129957388	3	4	113	1	0	0	0	0	1	0	0	0	13125	1261	44	3	971	3	RALGPS1	9	129957388	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	4668256	129957388	11256043	421	107787											
LCN9	392399	broad.mit.edu	37	chr9	138556232	138556232	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcttgcacacacacgctcGcacactcactgacttgcact	5	17	2	1	rs117500460	by1000genomes	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138556232	C	C	138556232	1	2	113	0	1	0	0	0	0	0	0	0	8759	1102	38	4		4	LCN9	9	138556232	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	8598844	138556232	2657199	422	107788											
DIP2C	22982	broad.mit.edu	37	chr10	436351	436351	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttccttttaaatgttactCtgaaagtcggtctgtagaat	8	6	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	436351	G	G	436351	1	3	113	0	1	0	0	0	0	0	0	0	4569	928	32	4		4	DIP2C	10	436351	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08		436351	135098396	423	107789											
PITRM1	10531	broad.mit.edu	37	chr10	3185760	3185760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacggcactgggactggaCccactcaggggtcagaggcg	15	14	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3185760	A	A	3185760	1	1	113	0	1	0	0	0	0	0	0	0	12048	522	18	3		3	PITRM1	10	3185760	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2749409	3185760	132348987	424	107790											
ITIH2	3698	broad.mit.edu	37	chr10	7768847	7768847	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccaggatcaatgattggtCttcctagttcctctgaggct	10	10	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7768847	A	A	7768847	1	1	113	0	1	0	0	0	0	0	0	0	7974	928	32	3		3	ITIH2	10	7768847	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4583087	7768847	127765900	425	107791											
DHTKD1	55526	broad.mit.edu	37	chr10	12136268	12136268	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccatcatgtacaaaatcatCaggtacaattataaaccctt	3	11	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12136268	G	G	12136268	3	3	113	1	0	0	0	0	1	0	0	0	4540	816	29	4	1382	4	DHTKD1	10	12136268	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4367421	12136268	123398479	426	107792											
FAM171A1	221061	broad.mit.edu	37	chr10	15325952	15325952	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcggtgacaatcaactgacTgcccagcttatactggaact	10	11	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15325952	A	A	15325952	3	1	113	1	0	0	0	0	1	0	0	0	5535	1580	55	5	2450	5	FAM171A1	10	15325952	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	3189684	15325952	120208795	427	107793											
ITGA8	8516	broad.mit.edu	37	chr10	15688991	15688991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttgccctacttctctgGggttgctctcaaattcacgt	8	11	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15688991	T	T	15688991	3	4	113	1	0	0	0	0	1	0	0	0	7952	1232	43	2	2206	2	ITGA8	10	15688991	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	363039	15688991	119845756	428	107794											
CACNB2	783	broad.mit.edu	37	chr10	18630002	18630002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcttgagctaaaatcataCtagttacttaactttttaga	6	6	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18630002	A	A	18630002	1	1	113	0	1	0	0	0	0	0	0	0	2579	580	20	3		3	CACNB2	10	18630002	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2941011	18630002	116904745	429	107795											
MYO3A	53904	broad.mit.edu	37	chr10	26455130	26455130	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgttttcatgtaattttcAggaaaataaataattatgct	5	3	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26455130	T	T	26455130	1	4	113	0	1	0	0	0	0	0	0	0	10170	203	7	5		5	MYO3A	10	26455130	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	7825128	26455130	109079617	430	107796											
ANKRD26	22852	broad.mit.edu	37	chr10	27355419	27355419	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaccatagaaagtacctcAgaatcccaaggtgattctat	6	10	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27355419	G	G	27355419	2	3	113	1	0	0	0	0	0	0	0	1	654	175	7	5		5	ANKRD26	10	27355419	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	900289	27355419	108179328	431	107797											
RAB18	22931	broad.mit.edu	37	chr10	27826732	27826732	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgatatttatgccctgatAgtttcccagaaaaacatgag	8	8	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27826732	T	T	27826732	1	4	113	0	1	0	0	0	0	0	0	0	13011	435	15	5		5	RAB18	10	27826732	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	471313	27826732	107708015	432	107798											
BMS1	9790	broad.mit.edu	37	chr10	43325942	43325942	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaatagcacacttcctGtttctactgtagtctcagtt	5	12	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43325942	C	C	43325942	1	2	113	0	1	0	0	0	0	0	0	0	1478	1392	48	4		4	BMS1	10	43325942	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	15499210	43325942	92208805	433	107799											
CXCL12	6387	broad.mit.edu	37	chr10	44868746	44868746	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcagagctgggctcctaCtgtaagggttcctcaggcgt	13	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44868746	A	A	44868746	1	1	113	0	1	0	0	0	0	0	0	0	4113	580	20	3		3	CXCL12	10	44868746	3'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	1542804	44868746	90666001	434	107800											
CHAT	1103	broad.mit.edu	37	chr10	50833719	50833719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagcaaccccttgtcttGgtgagggagggcacagagca	15	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50833719	T	T	50833719	1	4	113	0	1	0	0	0	0	0	0	0	3344	1363	47	2		2	CHAT	10	50833719	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5964973	50833719	84701028	435	107801											
PCDH15	65217	broad.mit.edu	37	chr10	55943196	55943196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacacttatattatgtgaGtagttacctgtatgacactg	8	6	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55943196	T	T	55943196	1	4	113	0	1	0	0	0	0	0	0	0	11605	1044	36	3		3	PCDH15	10	55943196	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5109477	55943196	79591551	436	107802											
RUFY2	55680	broad.mit.edu	37	chr10	70156631	70156631	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacgctcttgctcgacccaGaggggtcctaaagagaagaa	11	12	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70156631	T	T	70156631	3	4	113	1	0	0	0	0	1	0	0	0	13850	933	33	3	1689	3	RUFY2	10	70156631	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	14213435	70156631	65378116	437	107803											
STOX1	219736	broad.mit.edu	37	chr10	70645915	70645915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaacagcacaatggagaGggttgagtctcaggtgctta	13	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70645915	T	T	70645915	3	4	113	1	0	0	0	0	1	0	0	0	15437	1000	35	2	2373	2	STOX1	10	70645915	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	489284	70645915	64888832	438	107804											
KIAA1279	26128	broad.mit.edu	37	chr10	70775267	70775267	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggaggtgagtgtcctacTtaaccataatttattttttt	8	6	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70775267	G	G	70775267	1	3	113	0	1	0	0	0	0	0	0	0	8291	1624	56	5		5	KIAA1279	10	70775267	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	129352	70775267	64759480	439	107805											
AGAP5	729092	broad.mit.edu	37	chr10	75435611	75435611	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgtcagcatgattctcCggggctttcctctctttgtc	10	11	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75435611	T	T	75435611	2	4	113	1	0	0	0	0	0	0	0	1	371	639	23	4		4	AGAP5	10	75435611	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	4660344	75435611	60099136	440	107806											
SEC24C	9632	broad.mit.edu	37	chr10	75523493	75523493	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaagttccctctagtccctCtgggggaaaaagccaccatc	8	14	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75523493	G	G	75523493	1	3	113	0	1	0	0	0	0	0	0	0	14109	928	32	4		4	SEC24C	10	75523493	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	87882	75523493	60011254	441	107807											
KCNMA1	3778	broad.mit.edu	37	chr10	78651261	78651261	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccaaacagcaagctcaggtGacctcggtgctgtggactca	11	13	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78651261	A	A	78651261	1	1	113	0	1	0	0	0	0	0	0	0	8143	1305	45	4		4	KCNMA1	10	78651261	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3127768	78651261	56883486	442	107808											
MAT1A	4143	broad.mit.edu	37	chr10	82043734	82043734	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaccacccgctggtagtccAccatggccattgaggtgatc	10	14	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82043734	T	T	82043734	3	4	113	1	0	0	0	0	1	0	0	0	9421	159	6	5	985	5	MAT1A	10	82043734	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	3392473	82043734	53491013	443	107809											
DYDC2	84332	broad.mit.edu	37	chr10	82122230	82122230	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacctgaagaggtgctttGgaaattgcctggcccaggca	12	10	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82122230	T	T	82122230	4	4	113	1	0	0	0	0	0	1	0	0	4879	1349	47	2	33	2	DYDC2	10	82122230	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	78496	82122230	53412517	444	107810											
GRID1	2894	broad.mit.edu	37	chr10	87596613	87596613	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttataaggcagcgtcaggTgccctggtggcacacaccat	12	12	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87596613	A	A	87596613	1	1	113	0	1	0	0	0	0	0	0	0	6837	1711	59	5		5	GRID1	10	87596613	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	5474383	87596613	47938134	445	107811											
PDE6C	5146	broad.mit.edu	37	chr10	95380617	95380617	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaaagaaaagatgtcacaAccataacttgttattctctg	5	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95380617	T	T	95380617	1	4	113	0	1	0	0	0	0	0	0	0	11741	58	2	5		5	PDE6C	10	95380617	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	7784004	95380617	40154130	446	107812											
TLL2	7093	broad.mit.edu	37	chr10	98146809	98146809	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgatgctcgcacccgccgtGatctggccaggaacactcat	11	15	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98146809	T	T	98146809	3	4	113	1	0	0	0	0	1	0	0	0	16069	1290	45	3	1326	3	TLL2	10	98146809	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2766192	98146809	37387938	447	107813											
PAX2	5076	broad.mit.edu	37	chr10	102584414	102584414	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttccaggtcgtgacaTggcgagcaccactctgcctg	11	12	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102584414	A	A	102584414	3	1	113	1	0	0	0	0	1	0	0	0	11573	1464	51	5	1032	5	PAX2	10	102584414	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	4437605	102584414	32950333	448	107814											
PPRC1	23082	broad.mit.edu	37	chr10	103899482	103899482	+	Frame_Shift_Del	DEL	C	-	-													ggctgctgtgcccaaggtaaCcctctgctctgagaaagagg							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103899482	-	-	103899482	7	5	113	1	0	1	0	1	0	0	0	0	12511	507	18	0	1235	0	PPRC1	10	103899482	Frame_Shift_Del	DEL	C	TCGA-44-2668-01A-01W-0928-08	1315068	103899482	31635265	449	107815											
COL17A1	1308	broad.mit.edu	37	chr10	105832880	105832880	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattcttctgtactccttAcactccctggctcaaggctg	6	13	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105832880	T	T	105832880	1	4	113	0	1	0	0	0	0	0	0	0	3706	406	14	5		5	COL17A1	10	105832880	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1933398	105832880	29701867	450	107816											
SORCS3	22986	broad.mit.edu	37	chr10	107012488	107012488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtcattgatttggggaGggctggctcctccacagcct	12	11	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107012488	T	T	107012488	1	4	113	0	1	0	0	0	0	0	0	0	15046	1015	35	2		2	SORCS3	10	107012488	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1179608	107012488	28522259	451	107817											
ACSL5	51703	broad.mit.edu	37	chr10	114170209	114170209	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtctttctttcttggttttCcattcacatagaacctaggc	6	10	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114170209	T	T	114170209	1	4	113	0	1	0	0	0	0	0	0	0	180	870	30	4		4	ACSL5	10	114170209	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	7157721	114170209	21364538	452	107818											
NRAP	4892	broad.mit.edu	37	chr10	115372218	115372218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagacagagcaacagcagCtatttcaaagccactatttg	9	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115372218	A	A	115372218	1	1	113	0	1	0	0	0	0	0	0	0	10733	812	28	3		3	NRAP	10	115372218	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1202009	115372218	20162529	453	107819											
GRK5	2869	broad.mit.edu	37	chr10	121212201	121212201	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccccgcgctgtgtactgtAaggacgtgctggacatcgag	14	11	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121212201	T	T	121212201	4	4	113	1	0	0	0	0	0	1	0	0	6858	363	13	5	1477	5	GRK5	10	121212201	Nonsense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	5839983	121212201	14322546	454	107820											
C10orf120	399814	broad.mit.edu	37	chr10	124458145	124458145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacaggtgaacctttggCgtcagataaccttgggttca	11	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124458145	A	A	124458145	1	1	113	0	1	0	0	0	0	0	0	0	1601	783	27	3		3	C10orf120	10	124458145	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3245944	124458145	11076602	455	107821											
DHX32	55760	broad.mit.edu	37	chr10	127569217	127569217	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccatataggaagatcttcTctttctttcagaagtttata	5	7	4	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127569217	A	A	127569217	3	1	113	1	0	0	0	0	1	0	0	0	4545	1548	54	5	2098	5	DHX32	10	127569217	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	3111072	127569217	7965530	456	107822											
FANK1	92565	broad.mit.edu	37	chr10	127685120	127685120	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctctgcttttcccaagcCgtgttaaggttgatgttccc	8	11	1	1	rs141545587		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127685120	T	T	127685120	3	4	113	1	0	0	0	0	1	0	0	0	5729	666	23	4	418	4	FANK1	10	127685120	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	115903	127685120	7849627	457	107823											
C10orf90	118611	broad.mit.edu	37	chr10	128118409	128118409	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcaccgttctttgggtttGaacaagttatctggaaaaaa	9	6	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128118409	C	C	128118409	3	2	113	1	0	0	0	0	1	0	0	0	1634	1281	45	4	203	4	C10orf90	10	128118409	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	433289	128118409	7416338	458	107824											
KNDC1	85442	broad.mit.edu	37	chr10	135024994	135024994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgcgtcctgcaggcctGggtggaggactgctacgctg	15	13	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135024994	T	T	135024994	3	4	113	1	0	0	0	0	1	0	0	0	8497	1357	47	2	4063	2	KNDC1	10	135024994	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6906585	135024994	509753	459	107825											
PHRF1	57661	broad.mit.edu	37	chr11	608157	608157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctctcggaccgtcctccGccatgtccaagctccggggt	10	19	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	608157	T	T	608157	3	4	113	1	0	0	0	0	1	0	0	0	11956	1087	38	3	2748	3	PHRF1	11	608157	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08		608157	134398359	460	107826											
MUC5B	727897	broad.mit.edu	37	chr11	1271072	1271072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaccaaatccacagctaCcagcgttacacccatcccct	4	19	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1271072	A	A	1271072	3	1	113	1	0	0	0	0	1	0	0	0	10073	507	18	3	13093	3	MUC5B	11	1271072	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	662915	1271072	133735444	461	107827											
LSP1	4046	broad.mit.edu	37	chr11	1905755	1905755	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtgaagaaatcccagccaGacttgcccatctccaagatt	8	12	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1905755	T	T	1905755	3	4	113	1	0	0	0	0	1	0	0	0	9150	942	33	3	687	3	LSP1	11	1905755	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	634683	1905755	133100761	462	107828											
OR51D1	390038	broad.mit.edu	37	chr11	4661252	4661252	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtacctcttcctggccAtgctttccactattgaccta	5	15	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4661252	G	G	4661252	3	3	113	1	0	0	0	0	1	0	0	0	11187	217	8	5	234	5	OR51D1	11	4661252	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2755497	4661252	130345264	463	107829											
OR51L1	119682	broad.mit.edu	37	chr11	5020771	5020771	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgtttgcaccaggatgttCtaagattatcctgtacagat	8	8	2	2	rs150980273	byFrequency	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5020771	A	A	5020771	3	1	113	1	0	0	0	0	1	0	0	0	11196	912	32	3	561	3	OR51L1	11	5020771	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	359519	5020771	129985745	464	107830											
HBD	3045	broad.mit.edu	37	chr11	5254211	5254211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcaatggtacttgtgagCcagggcattagccacaccag	10	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5254211	A	A	5254211	3	1	113	1	0	0	0	0	1	0	0	0	7045	739	26	3	20	3	HBD	11	5254211	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	233440	5254211	129752305	465	107831											
CNGA4	1262	broad.mit.edu	37	chr11	6262724	6262724	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatcttacagcacttgccTgagcggctgcgggcagaagt	13	12	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6262724	A	A	6262724	2	1	113	1	0	0	0	0	0	0	0	1	3631	1567	55	5		5	CNGA4	11	6262724	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	1008513	6262724	128743792	466	107832											
SYT9	143425	broad.mit.edu	37	chr11	7439167	7439167	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtatcctcacagtactccTgcttctcatggtctgtccag	7	14	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7439167	A	A	7439167	1	1	113	0	1	0	0	0	0	0	0	0	15600	1595	55	5		5	SYT9	11	7439167	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	1176443	7439167	127567349	467	107833											
MICAL2	9645	broad.mit.edu	37	chr11	12244189	12244189	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctctaccggctgttacctCagacaaccccggagaacatc	8	15	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12244189	T	T	12244189	4	4	113	1	0	0	0	0	0	1	0	0	9663	827	29	4	1382	4	MICAL2	11	12244189	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4805022	12244189	122762327	468	107834											
PSMA1	5682	broad.mit.edu	37	chr11	14632617	14632617	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attgtcttttcccagccttgGagggccaaggcctttaccac	9	13	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14632617	T	T	14632617	1	4	113	0	1	0	0	0	0	0	0	0	12772	1189	41	3		3	PSMA1	11	14632617	5'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	2388428	14632617	120373899	469	107835											
SAA4	6291	broad.mit.edu	37	chr11	18257309	18257309	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggcttctctaaggagcactCacatccagtgagtatgtggc	11	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18257309	A	A	18257309	1	1	113	0	1	0	0	0	0	0	0	0	13911	841	29	3		3	SAA4	11	18257309	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3624692	18257309	116749207	470	107836											
HPS5	11234	broad.mit.edu	37	chr11	18318261	18318261	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attaacacttcagagaaattCcgtgcacaagataatcctgg	7	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18318261	T	T	18318261	1	4	113	0	1	0	0	0	0	0	0	0	7409	870	30	4		4	HPS5	11	18318261	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	60952	18318261	116688255	471	107837											
ZDHHC13	54503	broad.mit.edu	37	chr11	19197518	19197518	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtatgaagaaaagcaaCccaaaactctcaatctgatt	5	10	3	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19197518	T	T	19197518	1	4	113	0	1	0	0	0	0	0	0	0	17729	522	18	4		4	ZDHHC13	11	19197518	3'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	879257	19197518	115808998	472	107838											
SLC6A5	9152	broad.mit.edu	37	chr11	20623178	20623178	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggatggaatcacgtccgtGctcccgggcagcgtggccac	14	14	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20623178	T	T	20623178	2	4	113	1	0	0	0	0	0	0	0	1	14801	1306	46	3		3	SLC6A5	11	20623178	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1425660	20623178	114383338	473	107839											
SLC6A5	9152	broad.mit.edu	37	chr11	20649683	20649683	+	Intron	SNP	T	C	C													tggtgagtgggacagaagaaTggactgagttatcagacacc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20649683	C	C	20649683	1	2	113	0	1	0	0	0	0	0	0	0	14801	1479	51	5		5	SLC6A5	11	20649683	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	26505	20649683	114356833	474	107840	465	2									
SLC6A5	9152	broad.mit.edu	37	chr11	20649685	20649685	+	Intron	SNP	G	A	A													gtgagtgggacagaagaatgGactgagttatcagacacctg							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20649685	A	A	20649685	1	1	113	0	1	0	0	0	0	0	0	0	14801	1189	41	4		4	SLC6A5	11	20649685	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2	20649685	114356831	475	107841	465	2									
SLC6A5	9152	broad.mit.edu	37	chr11	20668466	20668466	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgctgggcatttgtaaccCcaaccattttaaccgtaagg	8	11	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20668466	G	G	20668466	3	3	113	1	0	0	0	0	1	0	0	0	14801	623	22	4	2110	4	SLC6A5	11	20668466	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	18781	20668466	114338050	476	107842											
BBOX1	8424	broad.mit.edu	37	chr11	27076968	27076968	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacagcatctactcctgaaGaccggaaacatggcttgtac	9	11	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27076968	C	C	27076968	1	2	113	0	1	0	0	0	0	0	0	0	1339	957	33	4		4	BBOX1	11	27076968	5'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	6408502	27076968	107929548	477	107843											
KIF18A	81930	broad.mit.edu	37	chr11	28091008	28091008	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacagtaaatctaatttttAtgatatttgatgtacatgat	5	3	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28091008	C	C	28091008	1	2	113	0	1	0	0	0	0	0	0	0	8350	464	16	5		5	KIF18A	11	28091008	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1014040	28091008	106915508	478	107844											
C11orf41	25758	broad.mit.edu	37	chr11	33620595	33620595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacacacagccactgggCtctgaccctcagtcgttctt	7	16	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33620595	A	A	33620595	1	1	113	0	1	0	0	0	0	0	0	0	1652	812	28	3		3	C11orf41	11	33620595	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	5529587	33620595	101385921	479	107845											
ABTB2	25841	broad.mit.edu	37	chr11	34356869	34356869	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaatgccaaaccagatGatgggtcagtaaagtcagcc	9	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34356869	A	A	34356869	1	1	113	0	1	0	0	0	0	0	0	0	103	1305	45	4		4	ABTB2	11	34356869	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	736274	34356869	100649647	480	107846											
PHF21A	51317	broad.mit.edu	37	chr11	45992988	45992988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaactaaatcccactaaaCaatatgctgcttaaccttgg	4	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45992988	A	A	45992988	1	1	113	0	1	0	0	0	0	0	0	0	11928	493	17	3		3	PHF21A	11	45992988	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	11636119	45992988	89013528	481	107847											
PACSIN3	29763	broad.mit.edu	37	chr11	47204070	47204070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccgcacagccggtgcCcgtcctccacccgctgtacc	10	21	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47204070	A	A	47204070	3	1	113	1	0	0	0	0	1	0	0	0	11470	623	22	2	1211	2	PACSIN3	11	47204070	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1211082	47204070	87802446	482	107848											
OR4C3	256144	broad.mit.edu	37	chr11	48347153	48347153	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaatacgtatgtcattGgtctgctggtggttgccaac	11	10	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48347153	A	A	48347153	3	1	113	1	0	0	0	0	1	0	0	0	11144	1348	47	4	663	4	OR4C3	11	48347153	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1143083	48347153	86659363	483	107849											
OR4P4	81300	broad.mit.edu	37	chr11	55405957	55405957	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatttggatgggaaacttaCtcataatgatttctatcacg	7	7	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55405957	G	G	55405957	3	3	113	1	0	0	0	0	1	0	0	0	11174	565	20	4	126	4	OR4P4	11	55405957	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	7058804	55405957	79600559	484	107850											
OR5L1	219437	broad.mit.edu	37	chr11	55579766	55579766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgctgacaaagtggccaCcgtgttctacacagtcgtga	11	10	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579766	A	A	55579766	3	1	113	1	0	0	0	0	1	0	0	0	11264	507	18	3	826	3	OR5L1	11	55579766	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	173809	55579766	79426750	485	107851											
OR5T1	390155	broad.mit.edu	37	chr11	56042957	56042957	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttatttaatttatttaatTacagtaatgtatccacttgg	4	4	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56042957	C	C	56042957	1	2	113	0	1	0	0	0	0	0	0	0	11275	1769	61	5		5	OR5T1	11	56042957	5'Flank	SNP	T	TCGA-44-2668-01A-01W-0928-08	463191	56042957	78963559	486	107852											
OR5M3	219482	broad.mit.edu	37	chr11	56237426	56237426	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccagcacaggccattttgAtgagaggtggatctgcacag	12	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56237426	T	T	56237426	3	4	113	1	0	0	0	0	1	0	0	0	11269	333	12	5	377	5	OR5M3	11	56237426	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	194469	56237426	78769090	487	107853											
GIF	2694	broad.mit.edu	37	chr11	59611611	59611611	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgtgtctttgatgctttttCtttctttcttttttttttga	5	7	4	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59611611	G	G	59611611	1	3	113	0	1	0	0	0	0	0	0	0	6440	928	32	4		4	GIF	11	59611611	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3374185	59611611	75394905	488	107854											
MS4A6E	245802	broad.mit.edu	37	chr11	60102398	60102398	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacctatttccaatgagacCatcataatgctcccatcaaa	3	13	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60102398	G	G	60102398	2	3	113	1	0	0	0	0	0	0	0	1	9959	581	21	4		4	MS4A6E	11	60102398	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	490787	60102398	74904118	489	107855											
MS4A14	84689	broad.mit.edu	37	chr11	60154047	60154047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaattaggcctatctaGcaatatagatccacaagatt	9	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60154047	T	T	60154047	1	4	113	0	1	0	0	0	0	0	0	0	9952	986	34	3		3	MS4A14	11	60154047	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	51649	60154047	74852469	490	107856											
MS4A14	84689	broad.mit.edu	37	chr11	60165318	60165318	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgtacccatttctctcCtcacaggctacccagatcct	4	17	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60165318	T	T	60165318	1	4	113	0	1	0	0	0	0	0	0	0	9952	696	24	4		4	MS4A14	11	60165318	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	11271	60165318	74841198	491	107857											
STARD10	10809	broad.mit.edu	37	chr11	72492187	72492187	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcacggcccaggaccggccGaggcccttggggctctgtag	15	15	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72492187	A	A	72492187	3	1	113	1	0	0	0	0	1	0	0	0	15373	1057	37	4	859	4	STARD10	11	72492187	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	12326869	72492187	62514329	492	107858											
RSF1	51773	broad.mit.edu	37	chr11	77409521	77409521	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagtattcttcatttacatCaggtacatactagctcagga	7	8	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77409521	T	T	77409521	1	4	113	0	1	0	0	0	0	0	0	0	13810	841	29	4		4	RSF1	11	77409521	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4917334	77409521	57596995	493	107859											
CTSC	1075	broad.mit.edu	37	chr11	88027474	88027474	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatgggcccatgatggacCaactcaagcttcatcagggc	11	13	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88027474	T	T	88027474	2	4	113	1	0	0	0	0	0	0	0	1	4065	593	21	4		4	CTSC	11	88027474	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	10617953	88027474	46979042	494	107860											
FAT3	120114	broad.mit.edu	37	chr11	92495401	92495401	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttatgttcttattcaagtAtactcctttgagcaataaat	6	6	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92495401	G	G	92495401	1	3	113	0	1	0	0	0	0	0	0	0	5748	464	16	5		5	FAT3	11	92495401	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	4467927	92495401	42511115	495	107861											
FAT3	120114	broad.mit.edu	37	chr11	92531802	92531802	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtcaacattgaggtgacaGatgtgaatgataacccacct	9	8	1	5			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531802	A	A	92531802	3	1	113	1	0	0	0	0	1	0	0	0	5748	942	33	4	5657	4	FAT3	11	92531802	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	36401	92531802	42474714	496	107862											
FAT3	120114	broad.mit.edu	37	chr11	92573952	92573952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcgcactctgtctccgtcGtgctgtctttctttctcatg	7	14	5	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92573952	A	A	92573952	1	1	113	0	1	0	0	0	0	0	0	0	5748	1160	40	4		4	FAT3	11	92573952	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	42150	92573952	42432564	497	107863											
MMP20	9313	broad.mit.edu	37	chr11	102464323	102464323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgttatccagtagtggGgacctgaaaacagaaattaa	9	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102464323	T	T	102464323	3	4	113	1	0	0	0	0	1	0	0	0	9752	1232	43	2	369	2	MMP20	11	102464323	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	9890371	102464323	32542193	498	107864											
CASP4	837	broad.mit.edu	37	chr11	104819384	104819384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctggagagtctctgacCcacagttccccacggtttgc	11	13	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104819384	A	A	104819384	3	1	113	1	0	0	0	0	1	0	0	0	2699	624	22	2	344	2	CASP4	11	104819384	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2355061	104819384	30187132	499	107865											
CASP4	837	broad.mit.edu	37	chr11	104825538	104825538	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagcatttgtcctgccatAcgttgcttctcttgcataga	8	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104825538	G	G	104825538	2	3	113	1	0	0	0	0	0	0	0	1	2699	378	14	5		5	CASP4	11	104825538	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	6154	104825538	30180978	500	107866											
BCO2	83875	broad.mit.edu	37	chr11	112089381	112089381	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagttgtgcagtagttaagGactaggtcaaagaatcttaa	11	5	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112089381	T	T	112089381	1	4	113	0	1	0	0	0	0	0	0	0	1390	1189	41	3		3	BCO2	11	112089381	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	7263843	112089381	22917135	501	107867											
USP28	57646	broad.mit.edu	37	chr11	113674068	113674068	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaatctagggcttagacctCacttttccccatttcaagaa	5	11	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113674068	T	T	113674068	1	4	113	0	1	0	0	0	0	0	0	0	17185	841	29	4		4	USP28	11	113674068	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1584687	113674068	21332448	502	107868											
DSCAML1	57453	broad.mit.edu	37	chr11	117303986	117303986	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcttgctgtggggagaaaGactggaggtggtggctcagc	18	6	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117303986	T	T	117303986	1	4	113	0	1	0	0	0	0	0	0	0	4809	957	33	3		3	DSCAML1	11	117303986	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3629918	117303986	17702530	503	107869											
MPZL3	196264	broad.mit.edu	37	chr11	118105960	118105960	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctctctccaaattaatattCacacacatcactttcaacct	0	14	5	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118105960	T	T	118105960	1	4	113	0	1	0	0	0	0	0	0	0	9845	841	29	4		4	MPZL3	11	118105960	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	801974	118105960	16900556	504	107870											
UBE4A	9354	broad.mit.edu	37	chr11	118263361	118263361	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattaatgacctgttttttTatttttgagatggagtcttg	8	3	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118263361	C	C	118263361	1	2	113	0	1	0	0	0	0	0	0	0	17008	1769	61	5		5	UBE4A	11	118263361	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	157401	118263361	16743155	505	107871											
MLL	4297	broad.mit.edu	37	chr11	118339474	118339474	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttctgattttaaaataaTtttcctttgttgtaggatga	7	4	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118339474	A	A	118339474	1	1	113	0	1	0	0	0	0	0	0	0	9713	1508	52	5		5	MLL	11	118339474	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	76113	118339474	16667042	506	107872											
PHLDB1	23187	broad.mit.edu	37	chr11	118520663	118520663	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggagccacagtgaccgcCatgggttagggaggtgtgat	17	7	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118520663	T	T	118520663	1	4	113	0	1	0	0	0	0	0	0	0	11946	609	21	4		4	PHLDB1	11	118520663	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	181189	118520663	16485853	507	107873											
TRIM29	23650	broad.mit.edu	37	chr11	120008510	120008510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgacaaactggatgatgggtCgccgccactcattgcccgcg	12	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120008510	A	A	120008510	3	1	113	1	0	0	0	0	1	0	0	0	16627	884	31	3	1572	3	TRIM29	11	120008510	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1487847	120008510	14998006	508	107874											
OR8B8	26493	broad.mit.edu	37	chr11	124310713	124310713	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctgcgtaggagatgctgTtcttctttaagacaaagctc	9	10	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124310713	C	C	124310713	3	2	113	1	0	0	0	0	1	0	0	0	11324	1725	60	5	669	5	OR8B8	11	124310713	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	4302203	124310713	10695803	509	107875											
OPCML	4978	broad.mit.edu	37	chr11	132306151	132306151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaagagggaagacattGctatcaattcattctacaaa	7	9	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132306151	T	T	132306151	1	4	113	0	1	0	0	0	0	0	0	0	10968	1334	46	3		3	OPCML	11	132306151	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	7995438	132306151	2700365	510	107876											
IGSF9B	22997	broad.mit.edu	37	chr11	133806092	133806092	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacgatgaaagggggccctGgggagagcagggaacaaacc	17	8	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133806092	A	A	133806092	1	1	113	0	1	0	0	0	0	0	0	0	7676	1363	47	4		4	IGSF9B	11	133806092	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1499941	133806092	1200424	511	107877											
KCNA6	3742	broad.mit.edu	37	chr12	4919483	4919483	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgaccgcaaccggcccagCttcgacgccatcctctacta	7	18	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4919483	T	T	4919483	2	4	113	1	0	0	0	0	0	0	0	1	8077	796	28	4		4	KCNA6	12	4919483	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08		4919483	128932412	512	107878											
CHD4	1108	broad.mit.edu	37	chr12	6697022	6697022	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcattttcttctttgccaCctgcgtgatgcgctcctcca	6	15	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6697022	G	G	6697022	3	3	113	1	0	0	0	0	1	0	0	0	3358	507	18	4	2247	4	CHD4	12	6697022	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1777539	6697022	127154873	513	107879											
MFAP5	8076	broad.mit.edu	37	chr12	8814708	8814708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagcgacatatctataGgggtggtgggcatagcagag	15	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8814708	T	T	8814708	1	4	113	0	1	0	0	0	0	0	0	0	9611	1015	35	2		2	MFAP5	12	8814708	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2117686	8814708	125037187	514	107880											
A2ML1	144568	broad.mit.edu	37	chr12	8976535	8976535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaccgctgtgcacaggGgtaaagaggggatttgtggt	18	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8976535	T	T	8976535	1	4	113	0	1	0	0	0	0	0	0	0	5	1247	43	2		2	A2ML1	12	8976535	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	161827	8976535	124875360	515	107881											
CLEC9A	283420	broad.mit.edu	37	chr12	10194219	10194219	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgacaaccagaacattctGgtaagaagattcttatgtca	7	8	3	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10194219	A	A	10194219	1	1	113	1	0	0	0	0	0	0	0	0	3554	1362	47	4		4	CLEC9A	12	10194219	Translation_Start_Site	SNP	G	TCGA-44-2668-01A-01W-0928-08	1217684	10194219	123657676	516	107882											
C12orf36	283422	broad.mit.edu	37	chr12	13529158	13529158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctgtttcccactcacCtccacagcctctgagtccct	6	19	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13529158	A	A	13529158	3	1	113	1	0	0	0	0	1	0	0	0	1696	695	24	2	242	2	C12orf36	12	13529158	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3334939	13529158	120322737	517	107883											
PDE6H	5149	broad.mit.edu	37	chr12	15134401	15134401	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgagctcgctcagtttggGattatctgaagtgccagagg	13	8	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15134401	A	A	15134401	2	1	113	1	0	0	0	0	0	0	0	1	11744	1161	41	4		4	PDE6H	12	15134401	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1605243	15134401	118717494	518	107884											
PDE3A	5139	broad.mit.edu	37	chr12	20792690	20792690	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcatttaatgttttccGttaccgatatttacctagtt	6	7	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20792690	C	C	20792690	1	2	113	0	1	0	0	0	0	0	0	0	11731	1160	40	4		4	PDE3A	12	20792690	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5658289	20792690	113059205	519	107885											
GYS2	2998	broad.mit.edu	37	chr12	21713354	21713354	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactgcttgtcctttcagggTttccacgttgaaattatttg	8	9	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21713354	A	A	21713354	3	1	113	1	0	0	0	0	1	0	0	0	6978	1725	60	5	1012	5	GYS2	12	21713354	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	920664	21713354	112138541	520	107886											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	113	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3684931	25398285	108453610	521	107887											
RASSF8	11228	broad.mit.edu	37	chr12	26217434	26217434	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttaccttttttacataggtcGaactggaaggtacaccctta	7	9	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26217434	C	C	26217434	3	2	113	1	0	0	0	0	1	0	0	0	13200	1058	37	4	113	4	RASSF8	12	26217434	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	819149	26217434	107634461	522	107888											
RASSF8	11228	broad.mit.edu	37	chr12	26218337	26218337	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaggtagggacactttgatAaatagaatgtttggcccatg	11	6	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26218337	T	T	26218337	1	4	113	0	1	0	0	0	0	0	0	0	13200	377	13	5		5	RASSF8	12	26218337	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	903	26218337	107633558	523	107889											
RASSF8	11228	broad.mit.edu	37	chr12	26220752	26220752	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatcgcccaggctggaatgCcaggggtattaccacggctt	13	11	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26220752	T	T	26220752	1	4	113	0	1	0	0	0	0	0	0	0	13200	754	26	4		4	RASSF8	12	26220752	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2415	26220752	107631143	524	107890											
OVCH1	341350	broad.mit.edu	37	chr12	29598250	29598250	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagcttataccaaatgcacCtcgtacaagggcatggaatg	9	9	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29598250	T	T	29598250	3	4	113	1	0	0	0	0	1	0	0	0	11417	681	24	4	586	4	OVCH1	12	29598250	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3377498	29598250	104253645	525	107891											
OVCH1	341350	broad.mit.edu	37	chr12	29598303	29598303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtccaggactcatgaaaGtcattgagtaaagtcttctt	10	8	4	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29598303	T	T	29598303	3	4	113	1	0	0	0	0	1	0	0	0	11417	1029	36	3	639	3	OVCH1	12	29598303	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	53	29598303	104253592	526	107892											
DDX11	1663	broad.mit.edu	37	chr12	31253967	31253967	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggctcttaccaggtcacgTgatccctccagacaacatcc	7	16	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31253967	G	G	31253967	3	3	113	1	0	0	0	0	1	0	0	0	4376	1696	59	5	2029	5	DDX11	12	31253967	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	1655664	31253967	102597928	527	107893											
LRRK2	120892	broad.mit.edu	37	chr12	40689416	40689416	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggagcttcaccagaatgcActcacgagctttccacaaca	7	14	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40689416	C	C	40689416	2	2	113	1	0	0	0	0	0	0	0	1	9120	146	6	5		5	LRRK2	12	40689416	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	9435449	40689416	93162479	528	107894											
CNTN1	1272	broad.mit.edu	37	chr12	41318287	41318287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagttatttgctgaaagGtaaaattgatgaatgtctct	9	3	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41318287	T	T	41318287	1	4	113	0	1	0	0	0	0	0	0	0	3672	1276	44	3		3	CNTN1	12	41318287	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	628871	41318287	92533608	529	107895											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777518	43777518	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgaatcttttctctcaCatgatgttgaacactagaaa	7	7	3	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43777518	T	T	43777518	3	4	113	1	0	0	0	0	1	0	0	0	266	478	17	4	1127	4	ADAMTS20	12	43777518	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2459231	43777518	90074377	530	107896											
ADAMTS20	80070	broad.mit.edu	37	chr12	43926034	43926035	+	Intron	DEL	AC	-	-													acaaaaatgaatttttcctaAcagtcgccaagaagaaaaaa							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43926035	-	-	43926034	6	5	113	0	1	1	0	1	0	0	0	0	266	58	2	0		0	ADAMTS20	12	43926034	Intron	DEL	AC	TCGA-44-2668-01A-01W-0928-08	148516	43926034	89925861	531	107897											
ANO6	196527	broad.mit.edu	37	chr12	45782068	45782068	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacgatgtactcacgtagtGataaatgagattactcaggt	10	7	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45782068	A	A	45782068	2	1	113	1	0	0	0	0	0	0	0	1	701	1277	45	4		4	ANO6	12	45782068	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1856034	45782068	88069827	532	107898											
PFKM	5213	broad.mit.edu	37	chr12	48501054	48501054	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatattgtcaagtcctaaggCcaagtagtcatgagtgtagc	10	7	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48501054	T	T	48501054	1	4	113	0	1	0	0	0	0	0	0	0	11860	754	26	4		4	PFKM	12	48501054	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2718986	48501054	85350841	533	107899											
MLL2	8085	broad.mit.edu	37	chr12	49436374	49436374	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaacggggactggcagaggCctgggtaggagtccattggg	20	7	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49436374	G	G	49436374	3	3	113	1	0	0	0	0	1	0	0	0	9714	739	26	4	10888	4	MLL2	12	49436374	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	935320	49436374	84415521	534	107900											
TMBIM6	7009	broad.mit.edu	37	chr12	50135944	50135944	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacactcctctgtgacacgcGaggctcctcagttacttagc	8	15	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50135944	C	C	50135944	1	2	113	0	1	0	0	0	0	0	0	0	16106	1059	37	4		4	TMBIM6	12	50135944	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	699570	50135944	83715951	535	107901											
TMBIM6	7009	broad.mit.edu	37	chr12	50152945	50152946	+	Intron	INS	-	GG	GG													atgagccagaaagtatggctINSggtttttttttctctgcaac							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	50152946	GG	GG	50152945	6	5	113	0	1	1	1	0	0	0	0	0	16106	1595	55	0		0	TMBIM6	12	50152945	Intron	INS	-	TCGA-44-2668-01A-01W-0928-08	17001	50152945	83698950	536	107902											
LETMD1	25875	broad.mit.edu	37	chr12	51453261	51453261	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagtcgtatagtatagCagtgcaggaacaaacagcac	10	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51453261	T	T	51453261	1	4	113	0	1	0	0	0	0	0	0	0	8808	725	25	4		4	LETMD1	12	51453261	3'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	1300316	51453261	82398634	537	107903											
SCN8A	6334	broad.mit.edu	37	chr12	52082891	52082891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaattccaggtgagaaaatTtgtacataagactgactttg	9	5	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52082891	A	A	52082891	1	1	113	0	1	0	0	0	0	0	0	0	14037	1856	64	5		5	SCN8A	12	52082891	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	629630	52082891	81769004	538	107904											
KRT2	3849	broad.mit.edu	37	chr12	53041739	53041739	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggttactggtccagggagGgtcaacccagctaaatgtca	12	10	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53041739	A	A	53041739	1	1	113	0	1	0	0	0	0	0	0	0	8528	1247	43	4		4	KRT2	12	53041739	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	958848	53041739	80810156	539	107905											
ITGA5	3678	broad.mit.edu	37	chr12	54803186	54803186	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattcagtccaataaggcccTtcctccctccctccaggccc	6	19	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54803186	A	A	54803186	1	1	113	0	1	0	0	0	0	0	0	0	7949	1624	56	5		5	ITGA5	12	54803186	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	1761447	54803186	79048709	540	107906											
GLI1	2735	broad.mit.edu	37	chr12	57864243	57864243	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctccccaccagagaatGgagcatcctccctgcctggc	10	17	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57864243	A	A	57864243	3	1	113	1	0	0	0	0	1	0	0	0	6501	1349	47	4	1762	4	GLI1	12	57864243	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3061057	57864243	75987652	541	107907											
GEFT	115557	broad.mit.edu	37	chr12	58006692	58006692	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggcaaggtctatcacctcCtctctttttcctcccattag	7	14	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58006692	G	G	58006692	1	3	113	0	1	0	0	0	0	0	0	0	6392	696	24	4		4	GEFT	12	58006692	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	142449	58006692	75845203	542	107908											
PTPRR	5801	broad.mit.edu	37	chr12	71066567	71066567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtattcaggaaaccttctGtctttctcaagaagggagat	10	7	4	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71066567	T	T	71066567	1	4	113	0	1	0	0	0	0	0	0	0	12918	1392	48	3		3	PTPRR	12	71066567	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	13059875	71066567	62785328	543	107909											
SLC6A15	55117	broad.mit.edu	37	chr12	85279239	85279239	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaagcatttttcaccaaAggacactgatcccaaggcag	9	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85279239	T	T	85279239	2	4	113	1	0	0	0	0	0	0	0	1	14792	59	3	5		5	SLC6A15	12	85279239	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	14212672	85279239	48572656	544	107910											
DUSP6	1848	broad.mit.edu	37	chr12	89743161	89743161	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctctcgaagtccagcagcTgacccatgaagttgaagtta	9	11	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89743161	A	A	89743161	3	1	113	1	0	0	0	0	1	0	0	0	4869	1580	55	5	133	5	DUSP6	12	89743161	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	4463922	89743161	44108734	545	107911											
DAO	1610	broad.mit.edu	37	chr12	109281146	109281146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagctcctgatcatgcCacagccccatgccagctgac	7	19	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109281146	A	A	109281146	1	1	113	0	1	0	0	0	0	0	0	0	4264	609	21	2		2	DAO	12	109281146	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	19537985	109281146	24570749	546	107912											
SVOP	55530	broad.mit.edu	37	chr12	109313388	109313388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctacctgggcctgcacCcacacctgcacccacacctc	5	21	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109313388	A	A	109313388	1	1	113	0	1	0	0	0	0	0	0	0	15541	638	22	2		2	SVOP	12	109313388	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	32242	109313388	24538507	547	107913											
TBX5	6910	broad.mit.edu	37	chr12	114841479	114841479	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtttttgttctgtcccCgcaagagaagccgagcagga	11	9	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114841479	G	G	114841479	1	3	113	0	1	0	0	0	0	0	0	0	15783	667	23	4		4	TBX5	12	114841479	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	5528091	114841479	19010416	548	107914											
TMEM132B	114795	broad.mit.edu	37	chr12	126139092	126139092	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccaaagaggaagagagtcAagttcacttcctacaccacc	8	13	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126139092	T	T	126139092	4	4	113	1	0	0	0	0	0	1	0	0	16169	131	5	5	3107	5	TMEM132B	12	126139092	Nonsense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	11297613	126139092	7712803	549	107915											
POLE	5426	broad.mit.edu	37	chr12	133256133	133256133	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgtgatcctgctccctgttCttcttcacggcaggggagat	12	12	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133256133	G	G	133256133	3	3	113	1	0	0	0	0	1	0	0	0	12291	912	32	4	6508	4	POLE	12	133256133	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	7117041	133256133	595762	550	107916											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20244255	20244255	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcctctgagcctccaggcaGagtgggtgatgcctgtctga	13	12	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20244255	C	C	20244255	1	2	113	0	1	0	0	0	0	0	0	0	9821	957	33	4		4	MPHOSPH8	13	20244255	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08		20244255	94925623	551	107917											
ATP12A	479	broad.mit.edu	37	chr13	25264879	25264879	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtaaaaggcctctggctctCagcccacatgtccacctgtg	10	14	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25264879	T	T	25264879	1	4	113	0	1	0	0	0	0	0	0	0	1126	841	29	4		4	ATP12A	13	25264879	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	5020624	25264879	89904999	552	107918											
ATP12A	479	broad.mit.edu	37	chr13	25283469	25283469	+	Intron	DEL	G	-	-													tgggtagagcagaacatcctGgggttagacctcaccagcct							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25283469	-	-	25283469	6	5	113	0	1	1	0	1	0	0	0	0	1126	1363	47	0		0	ATP12A	13	25283469	Intron	DEL	G	TCGA-44-2668-01A-01W-0928-08	18590	25283469	89886409	553	107919											
MTMR6	9107	broad.mit.edu	37	chr13	25832811	25832811	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cataaccttttccagctgctCtgttggccattgcattcagc	7	13	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25832811	A	A	25832811	3	1	113	1	0	0	0	0	1	0	0	0	10041	913	32	3	1151	3	MTMR6	13	25832811	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	549342	25832811	89337067	554	107920											
ATP8A2	51761	broad.mit.edu	37	chr13	26413589	26413589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaaccgtgcagcgcacGgccaggatccttcacaatgt	11	14	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26413589	T	T	26413589	1	4	113	0	1	0	0	0	0	0	0	0	1197	1131	39	1		1	ATP8A2	13	26413589	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	580778	26413589	88756289	555	107921											
ATP8A2	51761	broad.mit.edu	37	chr13	26542719	26542719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcataacacagagccaaGcacacctgcaaaaagacatt	5	13	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26542719	T	T	26542719	3	4	113	1	0	0	0	0	1	0	0	0	1197	962	34	3	3417	3	ATP8A2	13	26542719	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	129130	26542719	88627159	556	107922											
GPR12	2835	broad.mit.edu	37	chr13	27333529	27333529	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctctccgaatggtacgtcaGagcgtagtacagtgagaggt	13	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27333529	A	A	27333529	2	1	113	1	0	0	0	0	0	0	0	1	6700	933	33	4		4	GPR12	13	27333529	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	790810	27333529	87836349	557	107923											
USPL1	10208	broad.mit.edu	37	chr13	31205085	31205085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttagaaagcagctataaGgattcacttcttttagcaaa	7	7	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31205085	T	T	31205085	3	4	113	1	0	0	0	0	1	0	0	0	17219	991	35	2	352	2	USPL1	13	31205085	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3871556	31205085	83964793	558	107924											
FRY	10129	broad.mit.edu	37	chr13	32776200	32776200	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgtatcatttactggcataGaaaatatccatccttgagta	6	8	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32776200	C	C	32776200	1	2	113	0	1	0	0	0	0	0	0	0	6123	957	33	4		4	FRY	13	32776200	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1571115	32776200	82393678	559	107925											
C13orf23	80209	broad.mit.edu	37	chr13	39608336	39608336	+	Intron	DEL	A	-	-													gtattctgtcaaaacagcctAaaaaaaaaaaacacacacac							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39608336	-	-	39608336	6	5	113	0	1	1	0	1	0	0	0	0	1734	377	13	0		0	C13orf23	13	39608336	Intron	DEL	A	TCGA-44-2668-01A-01W-0928-08	6832136	39608336	75561542	560	107926											
NAA16	79612	broad.mit.edu	37	chr13	41892955	41892955	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttcagagactttggctatGaaaggattaacactgaactg	9	6	1	3	rs143056243	byFrequency	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41892955	C	C	41892955	3	2	113	1	0	0	0	0	1	0	0	0	10213	1290	45	4	163	4	NAA16	13	41892955	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2284619	41892955	73276923	561	107927											
ESD	2098	broad.mit.edu	37	chr13	47354087	47354087	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccttccatttactttgatCtgttcccaaatatccactaa	2	12	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47354087	A	A	47354087	3	1	113	1	0	0	0	0	1	0	0	0	5292	913	32	3	277	3	ESD	13	47354087	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	5461132	47354087	67815791	562	107928											
SUCLA2	8803	broad.mit.edu	37	chr13	48523795	48523795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatttaagttcttttccCcaaaaaatactagtatatgt	4	6	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48523795	A	A	48523795	1	1	113	0	1	0	0	0	0	0	0	0	15481	638	22	2		2	SUCLA2	13	48523795	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1169708	48523795	66646083	563	107929											
DIAPH3	81624	broad.mit.edu	37	chr13	60667825	60667826	+	Missense_Mutation	DNP	CC	AA	AA													ttgatactgaagtccttttcCcgcaatggtgcctttttatc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	60667826	AA	AA	60667825	3	1	113	1	0	0	0	0	1	0	0	0	4560	610	22	2	3269	2	DIAPH3	13	60667825	Missense_Mutation	DNP	CC	TCGA-44-2668-01A-01W-0928-08	12144030	60667825	54502053	564	107930											
GPC6	10082	broad.mit.edu	37	chr13	94482465	94482465	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaaatgatatgtttgtacgGacctatggcatgctgtacat	9	7	0	1	rs149069159		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94482465	T	T	94482465	2	4	113	1	0	0	0	0	0	0	0	1	6667	1161	41	3		3	GPC6	13	94482465	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	33814640	94482465	20687413	565	107931											
DCT	1638	broad.mit.edu	37	chr13	95121061	95121061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatcataaacactgcaGttggcaaactgcggctgggt	10	8	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95121061	T	T	95121061	3	4	113	1	0	0	0	0	1	0	0	0	4337	1020	36	3	1160	3	DCT	13	95121061	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	638596	95121061	20048817	566	107932											
SLC15A1	6564	broad.mit.edu	37	chr13	99358625	99358625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcgctggctgaaacacGccaggtgtctcccactaagc	11	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99358625	T	T	99358625	1	4	113	0	1	0	0	0	0	0	0	0	14511	1102	38	3		3	SLC15A1	13	99358625	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	4237564	99358625	15811253	567	107933											
FGF14	2259	broad.mit.edu	37	chr13	102375360	102375360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaagcaaacattgcttGgttaggtgtgagaatggtcc	13	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102375360	T	T	102375360	1	4	113	0	1	0	0	0	0	0	0	0	5900	1363	47	2		2	FGF14	13	102375360	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3016735	102375360	12794518	568	107934											
ARGLU1	55082	broad.mit.edu	37	chr13	107211830	107211830	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtctctgtcgctcgagttCttcgagcaactgcttttcca	8	12	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107211830	T	T	107211830	3	4	113	1	0	0	0	0	1	0	0	0	862	922	32	4	310	4	ARGLU1	13	107211830	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4836470	107211830	7958048	569	107935											
ARHGEF7	8874	broad.mit.edu	37	chr13	111896616	111896616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctttccagcaaatgctcGtacagtctttagaagaatgc	8	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111896616	T	T	111896616	3	4	113	1	0	0	0	0	1	0	0	0	913	1145	40	3	1022	3	ARHGEF7	13	111896616	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	4684786	111896616	3273262	570	107936											
ARHGEF7	8874	broad.mit.edu	37	chr13	111929984	111929984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatgttttgctaatgttGtctgccagtcctaggatgag	10	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111929984	C	C	111929984	3	2	113	1	0	0	0	0	1	0	0	0	913	1368	48	4	1587	4	ARHGEF7	13	111929984	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	33368	111929984	3239894	571	107937											
RASA3	22821	broad.mit.edu	37	chr13	114792860	114792860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgttgacccatgaagataCcaacctcaaaataaaacact	4	11	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114792860	A	A	114792860	1	1	113	0	1	0	0	0	0	0	0	0	13170	522	18	3		3	RASA3	13	114792860	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2862876	114792860	377018	572	107938											
OR11H4	390442	broad.mit.edu	37	chr14	20711267	20711267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggccatctcattttctgGgtgcttcctccagttctatt	7	12	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20711267	T	T	20711267	3	4	113	1	0	0	0	0	1	0	0	0	11022	1232	43	2	319	2	OR11H4	14	20711267	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08		20711267	86638273	573	107939											
CHD8	57680	broad.mit.edu	37	chr14	21895652	21895652	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgcacgtcccatcacaAtagcaaggagcactcgagct	8	14	2	0	rs12885609		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21895652	G	G	21895652	1	3	113	0	1	0	0	0	0	0	0	0	3362	116	4	5		5	CHD8	14	21895652	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1184385	21895652	85453888	574	107940											
CHD8	57680	broad.mit.edu	37	chr14	21899280	21899280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcctgaatttgtgccaCatgggcaccagtgactgagg	14	9	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21899280	A	A	21899280	1	1	113	0	1	0	0	0	0	0	0	0	3362	478	17	3		3	CHD8	14	21899280	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3628	21899280	85450260	575	107941											
SALL2	6297	broad.mit.edu	37	chr14	21992890	21992890	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctgccagtagtcccgtGgtgcttgggaatgccagatg	15	9	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21992890	A	A	21992890	2	1	113	1	0	0	0	0	0	0	0	1	13922	1335	47	4		4	SALL2	14	21992890	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	93610	21992890	85356650	576	107942											
SLC7A7	9056	broad.mit.edu	37	chr14	23242826	23242826	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccagatggtgtttagttaGatttgggatcccgttgcttg	12	6	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23242826	T	T	23242826	3	4	113	1	0	0	0	0	1	0	0	0	14817	942	33	3	10	3	SLC7A7	14	23242826	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1249936	23242826	84106714	577	107943											
PRMT5	10419	broad.mit.edu	37	chr14	23397429	23397429	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtattccagtctgcactcCcccacccaagaaagacaaat	6	15	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23397429	A	A	23397429	1	1	113	0	1	0	0	0	0	0	0	0	12645	638	22	2		2	PRMT5	14	23397429	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	154603	23397429	83952111	578	107944											
IL25	64806	broad.mit.edu	37	chr14	23842145	23842145	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgaggcctgtcagtcagtgcCccacttgtgactgagtgtgc	13	12	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23842145	G	G	23842145	1	3	113	0	1	0	0	0	0	0	0	0	7748	638	22	4		4	IL25	14	23842145	5'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	444716	23842145	83507395	579	107945											
MYH6	4624	broad.mit.edu	37	chr14	23853903	23853903	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggtgtcctgctccttcttCagctcctctgccatcatggc	8	16	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23853903	T	T	23853903	2	4	113	1	0	0	0	0	0	0	0	1	10132	813	29	4		4	MYH6	14	23853903	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	11758	23853903	83495637	580	107946											
CPNE6	9362	broad.mit.edu	37	chr14	24543139	24543139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaaaattgagcccaaccCtagcccaactcaaagtgcca	6	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24543139	A	A	24543139	1	1	113	0	1	0	0	0	0	0	0	0	3848	696	24	2		2	CPNE6	14	24543139	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	689236	24543139	82806401	581	107947											
ADCY4	196883	broad.mit.edu	37	chr14	24791241	24791241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattaggccctatggcatccGtggctcaggagtcagggggt	15	9	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24791241	A	A	24791241	1	1	113	0	1	0	0	0	0	0	0	0	296	1160	40	4		4	ADCY4	14	24791241	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	248102	24791241	82558299	582	107948											
NYNRIN	57523	broad.mit.edu	37	chr14	24878986	24878986	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacctgcagcttccaaagcAcctgcagctcccaaagtacc	7	17	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24878986	T	T	24878986	2	4	113	1	0	0	0	0	0	0	0	1	10891	146	6	5		5	NYNRIN	14	24878986	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	87745	24878986	82470554	583	107949											
C14orf106	55320	broad.mit.edu	37	chr14	45675252	45675252	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcacatattaaagttgtttCatagatatgtattggataaa	6	3	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45675252	T	T	45675252	1	4	113	0	1	0	0	0	0	0	0	0	1751	841	29	4		4	C14orf106	14	45675252	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	20796266	45675252	61674288	584	107950											
NID2	22795	broad.mit.edu	37	chr14	52507529	52507529	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atacgaaccgtctcctctccCgggtagaatgtaacttccat	7	13	2	1	rs146481572		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52507529	G	G	52507529	2	3	113	1	0	0	0	0	0	0	0	1	10510	639	23	4		4	NID2	14	52507529	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	6832277	52507529	54842011	585	107951											
KTN1	3895	broad.mit.edu	37	chr14	56086091	56086091	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattagaagttcaccaaacaAgactttagccagagcaatta	6	9	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56086091	C	C	56086091	1	2	113	0	1	0	0	0	0	0	0	0	8657	87	3	5		5	KTN1	14	56086091	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	3578562	56086091	51263449	586	107952											
WDR89	112840	broad.mit.edu	37	chr14	64065848	64065848	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaaatagtccaaagcatcTtctttcatgttaactacttc	3	10	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64065848	C	C	64065848	2	2	113	1	0	0	0	0	0	0	0	1	17463	1606	56	5		5	WDR89	14	64065848	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	7979757	64065848	43283692	587	107953											
C14orf50	145376	broad.mit.edu	37	chr14	65032211	65032211	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgcatacataaacatacatCtgtacatacatacacatatc	2	10	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65032211	T	T	65032211	1	4	113	0	1	0	0	0	0	0	0	0	1790	928	32	4		4	C14orf50	14	65032211	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	966363	65032211	42317329	588	107954											
HEATR4	399671	broad.mit.edu	37	chr14	73945268	73945268	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagacccaatgtgaccaGgtccactgcttcctgcatct	7	13	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73945268	T	T	73945268	1	4	113	0	1	0	0	0	0	0	0	0	7097	1015	35	2		2	HEATR4	14	73945268	3'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	8913057	73945268	33404272	589	107955											
LTBP2	4053	broad.mit.edu	37	chr14	75052556	75052556	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatggagaaggggacttaCccagctggtggcgactgtgg	16	10	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75052556	A	A	75052556	5	1	113	1	0	0	0	0	0	0	1	0	9161	521	18	3	4770	3	LTBP2	14	75052556	Splice_Site	SNP	C	TCGA-44-2668-01A-01W-0928-08	1107288	75052556	32296984	590	107956											
FLVCR2	55640	broad.mit.edu	37	chr14	76108196	76108196	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccttagcattcattaaGgcagatctccggagacagaa	8	10	3	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76108196	C	C	76108196	3	2	113	1	0	0	0	0	1	0	0	0	6004	991	35	4	1498	4	FLVCR2	14	76108196	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1055640	76108196	31241344	591	107957											
C14orf179	112752	broad.mit.edu	37	chr14	76524982	76524982	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcttttctttttttttttCaggtttaggaggaaggcttc	9	5	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76524982	G	G	76524982	1	3	113	0	1	0	0	0	0	0	0	0	1775	841	29	4		4	C14orf179	14	76524982	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	416786	76524982	30824558	592	107958											
ANGEL1	23357	broad.mit.edu	37	chr14	77273815	77273815	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccagctgctcccagtaatGatcttcctggacttcctgga	8	13	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77273815	A	A	77273815	3	1	113	1	0	0	0	0	1	0	0	0	608	1290	45	4	1133	4	ANGEL1	14	77273815	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	748833	77273815	30075725	593	107959											
GALC	2581	broad.mit.edu	37	chr14	88420461	88420461	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcatctattcagcctgaaGaatattccagtgtagttagt	7	7	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88420461	A	A	88420461	1	1	113	0	1	0	0	0	0	0	0	0	6263	957	33	4		4	GALC	14	88420461	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	11146646	88420461	18929079	594	107960											
KIAA1409	57578	broad.mit.edu	37	chr14	94160828	94160828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtggatttatgttgaagGtactttctgaagataattag	10	2	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94160828	T	T	94160828	1	4	113	0	1	0	0	0	0	0	0	0	8300	1276	44	3		3	KIAA1409	14	94160828	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5740367	94160828	13188712	595	107961											
SERPINA6	866	broad.mit.edu	37	chr14	94776131	94776131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggctcagtgcagcgatgaCtgtgttcatcttccccttgt	10	13	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94776131	A	A	94776131	3	1	113	1	0	0	0	0	1	0	0	0	14206	565	20	3	403	3	SERPINA6	14	94776131	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	615303	94776131	12573409	596	107962											
C14orf49	161176	broad.mit.edu	37	chr14	95884113	95884113	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcatcctcaggaggggccCtgggactgatggaggttgga	18	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95884113	A	A	95884113	1	1	113	0	1	0	0	0	0	0	0	0	1789	696	24	2		2	C14orf49	14	95884113	3'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	1107982	95884113	11465427	597	107963											
C14orf49	161176	broad.mit.edu	37	chr14	95910860	95910860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctgttttccaggaaggtCccgctgaagccccttctcgg	12	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95910860	A	A	95910860	3	1	113	1	0	0	0	0	1	0	0	0	1789	855	30	3	1225	3	C14orf49	14	95910860	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	26747	95910860	11438680	598	107964											
DYNC1H1	1778	broad.mit.edu	37	chr14	102494030	102494031	+	In_Frame_Ins	INS	-	CTG	CTG													agggggcacagaaggaaggcINSctgatgctggactcgcacga							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTG	102494031	CTG	CTG	102494030	7	5	113	1	0	1	1	0	0	0	0	0	4881	726	26	0	9309	0	DYNC1H1	14	102494030	In_Frame_Ins	INS	-	TCGA-44-2668-01A-01W-0928-08	6583170	102494030	4855510	599	107965											
OR4M2	390538	broad.mit.edu	37	chr15	22368980	22368980	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctccactatgctaccatCatgaatcaacgtctctgctg	5	16	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22368980	A	A	22368980	2	1	113	1	0	0	0	0	0	0	0	1	11170	816	29	3		3	OR4M2	15	22368980	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08		22368980	80162412	600	107966											
C15orf2	23742	broad.mit.edu	37	chr15	24923924	24923924	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcgagggtcacaatgcaagTgctttccccaatggcacagc	11	12	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24923924	G	G	24923924	3	3	113	1	0	0	0	0	1	0	0	0	1797	1693	59	5	2912	5	C15orf2	15	24923924	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	2554944	24923924	77607468	601	107967											
OCA2	4948	broad.mit.edu	37	chr15	28141441	28141441	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accggaagcacatcatgggcCagaatgttgcagattacatg	11	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28141441	T	T	28141441	1	4	113	0	1	0	0	0	0	0	0	0	10910	609	21	4		4	OCA2	15	28141441	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3217517	28141441	74389951	602	107968											
OCA2	4948	broad.mit.edu	37	chr15	28200322	28200323	+	Frame_Shift_Ins	INS	-	T	T													cctttttttggagttcttggINSatattggtctcccaattttt							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28200323	T	T	28200322	7	5	113	1	0	1	1	0	0	0	0	0	10910	1164	41	0	724	0	OCA2	15	28200322	Frame_Shift_Ins	INS	-	TCGA-44-2668-01A-01W-0928-08	58881	28200322	74331070	603	107969											
OCA2	4948	broad.mit.edu	37	chr15	28211878	28211878	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttataaagctttctgttccAgtaaaggagtctgaggagcg	12	6	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28211878	T	T	28211878	3	4	113	1	0	0	0	0	1	0	0	0	10910	188	7	5	962	5	OCA2	15	28211878	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	11556	28211878	74319514	604	107970											
HERC2	8924	broad.mit.edu	37	chr15	28482072	28482072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttacagttcaaaaaaaaTaatctgctgatcagcaaaaa	4	8	3	1	rs4035913		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28482072	A	A	28482072	1	1	113	0	1	0	0	0	0	0	0	0	7125	1421	49	5		5	HERC2	15	28482072	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	270194	28482072	74049320	605	107971											
HERC2	8924	broad.mit.edu	37	chr15	28483346	28483346	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccaaagctaccactgggtCttcccctgcaaactgagctg	8	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28483346	A	A	28483346	3	1	113	1	0	0	0	0	1	0	0	0	7125	913	32	3	11014	3	HERC2	15	28483346	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1274	28483346	74048046	606	107972											
FAM189A1	23359	broad.mit.edu	37	chr15	29674805	29674805	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgcctggggtctcacCagaagtcatcccctctctcc	8	17	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29674805	T	T	29674805	1	4	113	0	1	0	0	0	0	0	0	0	5562	609	21	4		4	FAM189A1	15	29674805	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1191459	29674805	72856587	607	107973											
ARHGAP11B	89839	broad.mit.edu	37	chr15	30927491	30927491	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatttgtttaaatgaggaAaatctctgtttctttcaaag	7	4	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30927491	T	T	30927491	1	4	113	0	1	0	0	0	0	0	0	0	866	29	1	5		5	ARHGAP11B	15	30927491	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1252686	30927491	71603901	608	107974											
RYR3	6263	broad.mit.edu	37	chr15	34115267	34115267	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttctggtcttatgcagtCttgcaggtaaatgcgggaaa	11	8	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34115267	A	A	34115267	3	1	113	1	0	0	0	0	1	0	0	0	13881	913	32	3	11388	3	RYR3	15	34115267	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3187776	34115267	68416125	609	107975											
RYR3	6263	broad.mit.edu	37	chr15	34153353	34153353	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgaaacacatacattAcaagagcacaacttagccaa	6	9	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34153353	T	T	34153353	3	4	113	1	0	0	0	0	1	0	0	0	13881	388	14	5	14845	5	RYR3	15	34153353	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	38086	34153353	68378039	610	107976											
PLA2G4D	283748	broad.mit.edu	37	chr15	42364436	42364436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgcagagggtttggggGgtggagtatgtgggagggga	26	1	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42364436	T	T	42364436	1	4	113	0	1	0	0	0	0	0	0	0	12099	1247	43	2		2	PLA2G4D	15	42364436	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	8211083	42364436	60166956	611	107977											
TRIM69	140691	broad.mit.edu	37	chr15	45059966	45059966	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgcacatcttacatccacAgtaatgagtcataatattat	4	8	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45059966	T	T	45059966	3	4	113	1	0	0	0	0	1	0	0	0	16667	188	7	5	1525	5	TRIM69	15	45059966	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2695530	45059966	57471426	612	107978											
SEMA6D	80031	broad.mit.edu	37	chr15	48063015	48063015	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaagagctaccacccaatgGagatactaaatccatggtaa	8	9	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48063015	A	A	48063015	3	1	113	1	0	0	0	0	1	0	0	0	14155	1174	41	4	2368	4	SEMA6D	15	48063015	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3003049	48063015	54468377	613	107979											
SHC4	399694	broad.mit.edu	37	chr15	49183051	49183051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaagacttagcatactacCtccacacagtaagtgtttaa	5	9	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49183051	A	A	49183051	1	1	113	0	1	0	0	0	0	0	0	0	14386	696	24	2		2	SHC4	15	49183051	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1120036	49183051	53348341	614	107980											
CGNL1	84952	broad.mit.edu	37	chr15	57731244	57731244	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggatattgatacaggatcAattcctggtgtggatcagtt	12	6	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57731244	G	G	57731244	2	3	113	1	0	0	0	0	0	0	0	1	3334	117	5	5		5	CGNL1	15	57731244	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	8548193	57731244	44800148	615	107981											
GCOM1	145781	broad.mit.edu	37	chr15	57976597	57976597	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctgcattttctcatttctCagccaaacaggcaggactcg	7	13	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57976597	T	T	57976597	1	4	113	0	1	0	0	0	0	0	0	0	6367	841	29	4		4	GCOM1	15	57976597	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	245353	57976597	44554795	616	107982											
TLN2	83660	broad.mit.edu	37	chr15	62993362	62993362	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaacacgaaatccattctCaagttgatgctatcacggcc	6	13	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62993362	G	G	62993362	3	3	113	1	0	0	0	0	1	0	0	0	16071	827	29	4	1699	4	TLN2	15	62993362	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	5016765	62993362	39538030	617	107983											
IGDCC3	9543	broad.mit.edu	37	chr15	65622021	65622021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttctctaggcctagtcCcccacacaccagcccagccc	5	22	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65622021	A	A	65622021	1	1	113	0	1	0	0	0	0	0	0	0	7638	638	22	2		2	IGDCC3	15	65622021	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2628659	65622021	36909371	618	107984											
ITGA11	22801	broad.mit.edu	37	chr15	68631901	68631901	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggtaggactcgcggagagGaatgaccttcccggcactcg	14	12	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68631901	A	A	68631901	3	1	113	1	0	0	0	0	1	0	0	0	7944	1174	41	4	2433	4	ITGA11	15	68631901	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3009880	68631901	33899491	619	107985											
TLE3	7090	broad.mit.edu	37	chr15	70358349	70358349	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgccccagcccagccGcacctctgtgatcgagttca	8	19	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70358349	A	A	70358349	1	1	113	0	1	0	0	0	0	0	0	0	16063	1102	38	4		4	TLE3	15	70358349	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1726448	70358349	32173043	620	107986											
PTPN9	5780	broad.mit.edu	37	chr15	75766070	75766070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagactttttgctcccataCcatgagccagaaatcacgat	6	12	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75766070	A	A	75766070	3	1	113	1	0	0	0	0	1	0	0	0	12902	507	18	3	629	3	PTPN9	15	75766070	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	5407721	75766070	26765322	621	107987											
IDH3A	3419	broad.mit.edu	37	chr15	78453903	78453903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccttctagtgtcatctgGgttttcttctgtataacagg	8	8	5	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78453903	T	T	78453903	1	4	113	0	1	0	0	0	0	0	0	0	7566	1247	43	2		2	IDH3A	15	78453903	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2687833	78453903	24077489	622	107988											
SLC28A1	9154	broad.mit.edu	37	chr15	85486830	85486830	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctcgggacatgtaggcctCagttgtctcatttgtctaaa	10	9	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85486830	T	T	85486830	1	4	113	0	1	0	0	0	0	0	0	0	14645	841	29	4		4	SLC28A1	15	85486830	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	7032927	85486830	17044562	623	107989											
C15orf42	90381	broad.mit.edu	37	chr15	90128938	90128938	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattagggcttctcacgtaGgttgctgatgtggaccctgg	13	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90128938	T	T	90128938	5	4	113	1	0	0	0	0	0	0	1	0	1809	1014	35	2	1190	2	C15orf42	15	90128938	Splice_Site	SNP	G	TCGA-44-2668-01A-01W-0928-08	4642108	90128938	12402454	624	107990											
SEMA4B	10509	broad.mit.edu	37	chr15	90760868	90760868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagctggctaggctggGcagaggaccacagagggaag	18	9	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90760868	T	T	90760868	1	4	113	0	1	0	0	0	0	0	0	0	14145	1218	42	3		3	SEMA4B	15	90760868	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	631930	90760868	11770524	625	107991											
IQGAP1	8826	broad.mit.edu	37	chr15	91034542	91034542	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagtgtggtaaacttgctaaGaacttctttttcccatccgt	7	9	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91034542	A	A	91034542	1	1	113	0	1	0	0	0	0	0	0	0	7884	957	33	4		4	IQGAP1	15	91034542	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	273674	91034542	11496850	626	107992											
C15orf32	145858	broad.mit.edu	37	chr15	93015490	93015490	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccaagacttccccaagaGgagaaggaacggctccccct	9	15	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93015490	T	T	93015490	4	4	113	1	0	0	0	0	0	1	0	0	1803	1001	35	2	114	2	C15orf32	15	93015490	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1980948	93015490	9515902	627	107993											
CHD2	1106	broad.mit.edu	37	chr15	93545281	93545281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtcccttgaggctatttGcttgaaaacaagcttctaag	9	8	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93545281	T	T	93545281	1	4	113	0	1	0	0	0	0	0	0	0	3356	1334	46	3		3	CHD2	15	93545281	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	529791	93545281	8986111	628	107994											
C16orf63	123811	broad.mit.edu	37	chr16	15967411	15967411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggctgaagtgaaggccCtttcagaaatgcattctgga	12	7	2	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15967411	A	A	15967411	3	1	113	1	0	0	0	0	1	0	0	0	1840	681	24	2	147	2	C16orf63	16	15967411	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08		15967411	74387342	629	107995											
ACSM5	54988	broad.mit.edu	37	chr16	20429361	20429361	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaattgcttctttttttttCtgcctgtaccaccatctagg	5	10	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20429361	G	G	20429361	1	3	113	0	1	0	0	0	0	0	0	0	187	928	32	4		4	ACSM5	16	20429361	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	4461950	20429361	69925392	630	107996											
CHP2	63928	broad.mit.edu	37	chr16	23767571	23767571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacccacaccagggacaGgctccagggatctcccactc	9	16	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23767571	T	T	23767571	1	4	113	0	1	0	0	0	0	0	0	0	3398	1015	35	2		2	CHP2	16	23767571	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3338210	23767571	66587182	631	107997											
KIAA0556	23247	broad.mit.edu	37	chr16	27715390	27715390	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaggcatttcgcatcagtGaggattgctctgacagtggt	12	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27715390	T	T	27715390	1	4	113	0	1	0	0	0	0	0	0	0	8253	1305	45	3		3	KIAA0556	16	27715390	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	3947819	27715390	62639363	632	107998											
KIAA0556	23247	broad.mit.edu	37	chr16	27782858	27782858	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctagggggtaactggctggtGattctgggccgtcgtgagct	17	8	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27782858	A	A	27782858	1	1	113	0	1	0	0	0	0	0	0	0	8253	1305	45	4		4	KIAA0556	16	27782858	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	67468	27782858	62571895	633	107999											
KIAA0556	23247	broad.mit.edu	37	chr16	27784480	27784480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactacatcggcctcaccgGcctggagctgtatgacgagc	11	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27784480	T	T	27784480	3	4	113	1	0	0	0	0	1	0	0	0	8253	1203	42	3	4349	3	KIAA0556	16	27784480	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1622	27784480	62570273	634	108000											
XPO6	23214	broad.mit.edu	37	chr16	28128626	28128626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agataaaaggtgtaggctttGctgtttcgagaccttggtgc	13	6	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28128626	T	T	28128626	1	4	113	0	1	0	0	0	0	0	0	0	17575	1334	46	3		3	XPO6	16	28128626	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	344146	28128626	62226127	635	108001											
ITGAX	3687	broad.mit.edu	37	chr16	31372608	31372608	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacttagaacccgaggctcCgtgaaacaggtagacagcgt	11	12	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31372608	G	G	31372608	1	3	113	0	1	0	0	0	0	0	0	0	7959	667	23	4		4	ITGAX	16	31372608	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3243982	31372608	58982145	636	108002											
ITGAX	3687	broad.mit.edu	37	chr16	31384649	31384649	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacggggaagactcctacGgaaccaccatcaccttctcc	8	15	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31384649	T	T	31384649	4	4	113	1	0	0	0	0	0	1	0	0	7959	1117	39	1	2524	1	ITGAX	16	31384649	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	12041	31384649	58970104	637	108003											
ITGAX	3687	broad.mit.edu	37	chr16	31391186	31391186	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtctcccacccccagGtacccaaggactgcatgtgg	12	14	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31391186	T	T	31391186	5	4	113	1	0	0	0	0	0	0	1	0	7959	1275	44	3	3075	3	ITGAX	16	31391186	Splice_Site	SNP	G	TCGA-44-2668-01A-01W-0928-08	6537	31391186	58963567	638	108004											
ITGAD	3681	broad.mit.edu	37	chr16	31424230	31424230	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgagtgggggtcaggacctCacccaggatggactgatgga	16	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31424230	A	A	31424230	2	1	113	1	0	0	0	0	0	0	0	1	7954	813	29	3		3	ITGAD	16	31424230	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	33044	31424230	58930523	639	108005											
ITGAD	3681	broad.mit.edu	37	chr16	31429491	31429491	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgcagtgtcaaccacccCatcttccatgagggctctaa	8	15	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31429491	A	A	31429491	2	1	113	1	0	0	0	0	0	0	0	1	7954	581	21	2		2	ITGAD	16	31429491	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	5261	31429491	58925262	640	108006											
ABCC11	85320	broad.mit.edu	37	chr16	48218287	48218287	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaccccctgagtctgcCcagaagccacaggcagagga	13	13	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48218287	G	G	48218287	1	3	113	0	1	0	0	0	0	0	0	0	51	638	22	4		4	ABCC11	16	48218287	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	16788796	48218287	42136466	641	108007											
SNX20	124460	broad.mit.edu	37	chr16	50709903	50709903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgggcttggggagatgGctgggtctatctgagatggc	19	6	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50709903	T	T	50709903	1	4	113	0	1	0	0	0	0	0	0	0	15006	1218	42	3		3	SNX20	16	50709903	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2491616	50709903	39644850	642	108008											
CHD9	80205	broad.mit.edu	37	chr16	53330938	53330938	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtggtttttgaccctgacAgaggccaatttgattggaca	12	7	0	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53330938	T	T	53330938	4	4	113	1	0	0	0	0	0	1	0	0	3363	180	7	5	5695	5	CHD9	16	53330938	Nonsense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2621035	53330938	37023815	643	108009											
DPEP2	64174	broad.mit.edu	37	chr16	68021439	68021439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaataaggactgggaaggtGgccacaactgcaaggactgg	15	7	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68021439	T	T	68021439	2	4	113	1	0	0	0	0	0	0	0	1	4754	1335	47	2		2	DPEP2	16	68021439	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	14690501	68021439	22333314	644	108010											
HYDIN	54768	broad.mit.edu	37	chr16	70841870	70841870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtctcacccaggtggctGggctcgaataagacttccac	11	12	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70841870	T	T	70841870	2	4	113	1	0	0	0	0	0	0	0	1	7537	1335	47	2		2	HYDIN	16	70841870	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	2820431	70841870	19512883	645	108011											
ADAMTS18	170692	broad.mit.edu	37	chr16	77323148	77323148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaagttgactggagcatGgtgcctttttacctctcttt	9	8	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77323148	T	T	77323148	1	4	113	0	1	0	0	0	0	0	0	0	263	1363	47	2		2	ADAMTS18	16	77323148	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	6481278	77323148	13031605	646	108012											
ACSF3	197322	broad.mit.edu	37	chr16	89169203	89169203	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctctcggttgcaccctcaGactaggcgcctttcccctgt	10	16	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89169203	C	C	89169203	1	2	113	0	1	0	0	0	0	0	0	0	176	957	33	4		4	ACSF3	16	89169203	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	11846055	89169203	1185550	647	108013											
RPL13	6137	broad.mit.edu	37	chr16	89629283	89629283	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtttaacaacctgtctttCtcttctaggtctataagaag	8	8	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89629283	T	T	89629283	1	4	113	0	1	0	0	0	0	0	0	0	13670	928	32	4		4	RPL13	16	89629283	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	460080	89629283	725470	648	108014											
PRDM7	11105	broad.mit.edu	37	chr16	90128790	90128790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacagcaagctgtgtgagtGgctgaaagggtcactcacag	13	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90128790	T	T	90128790	1	4	113	0	1	0	0	0	0	0	0	0	12567	1363	47	2		2	PRDM7	16	90128790	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	499507	90128790	225963	649	108015											
RPH3AL	9501	broad.mit.edu	37	chr17	96884	96884	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacaggccatcctgggagaGaggcagaggggacttacctc	14	10	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96884	C	C	96884	1	2	113	0	1	0	0	0	0	0	0	0	13663	957	33	4		4	RPH3AL	17	96884	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08		96884	81098326	650	108016											
MYO1C	4641	broad.mit.edu	37	chr17	1385813	1385813	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtacttcccgaacctgcTggagttatcgttccggaggg	12	11	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1385813	A	A	1385813	3	1	113	1	0	0	0	0	1	0	0	0	10164	1580	55	5	2717	5	MYO1C	17	1385813	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	1288929	1385813	79809397	651	108017											
TP53	7157	broad.mit.edu	37	chr17	7577082	7577082	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcttgcggagattctcttCctctgtgcgccggtctctcc	9	14	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577082	A	A	7577082	4	1	113	1	0	0	0	0	0	1	0	0	16505	864	30	3	430	3	TP53	17	7577082	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	6191269	7577082	73618128	652	108018											
GLP2R	9340	broad.mit.edu	37	chr17	9792900	9792900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaggtcttggggagctgGgcgcccagccccaacaggac	16	13	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9792900	T	T	9792900	3	4	113	1	0	0	0	0	1	0	0	0	6517	1232	43	2	1590	2	GLP2R	17	9792900	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2215818	9792900	71402310	653	108019											
MYH13	8735	broad.mit.edu	37	chr17	10204269	10204269	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacgagcatcaggtgagcctCattcttccatcttctgtggg	10	11	5	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10204269	T	T	10204269	2	4	113	1	0	0	0	0	0	0	0	1	10126	837	29	4		4	MYH13	17	10204269	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	411369	10204269	70990941	654	108020											
MYH13	8735	broad.mit.edu	37	chr17	10222113	10222113	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccagtcaggtacctttgaCttggagagagcctcgatgtt	13	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10222113	G	G	10222113	3	3	113	1	0	0	0	0	1	0	0	0	10126	564	20	4	2144	4	MYH13	17	10222113	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	17844	10222113	70973097	655	108021											
MYH1	4619	broad.mit.edu	37	chr17	10408755	10408756	+	Missense_Mutation	DNP	GG	TT	TT													gtcaatgtcaatggaccccaGgagcttctctgaagccttct							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10408756	TT	TT	10408755	3	4	113	1	0	0	0	0	1	0	0	0	10123	991	35	2	3655	2	MYH1	17	10408755	Missense_Mutation	DNP	GG	TCGA-44-2668-01A-01W-0928-08	186642	10408755	70786455	656	108022											
MYH2	4620	broad.mit.edu	37	chr17	10426485	10426485	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttgaagcctgagaatattCtttctatcttcttccgtctg	6	10	6	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10426485	A	A	10426485	3	1	113	1	0	0	0	0	1	0	0	0	10129	912	32	3	238	3	MYH2	17	10426485	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	17730	10426485	70768725	657	108023											
MYH2	4620	broad.mit.edu	37	chr17	10428361	10428361	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatgcgcaggatctttcCctcttcatgttcaagagatg	10	10	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10428361	A	A	10428361	4	1	113	1	0	0	0	0	0	1	0	0	10129	632	22	2	1169	2	MYH2	17	10428361	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1876	10428361	70766849	658	108024											
DNAH9	1770	broad.mit.edu	37	chr17	11514989	11514989	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaagatctgaaatacatcTataatcaactgagaacaata	5	6	3	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11514989	C	C	11514989	3	2	113	1	0	0	0	0	1	0	0	0	4648	1522	53	5	810	5	DNAH9	17	11514989	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	1086628	11514989	69680221	659	108025											
DNAH9	1770	broad.mit.edu	37	chr17	11520764	11520764	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacatccatgtgcacctgaTaccgctccagcgccacctgg	10	16	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11520764	C	C	11520764	3	2	113	1	0	0	0	0	1	0	0	0	4648	1406	49	5	959	5	DNAH9	17	11520764	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	5775	11520764	69674446	660	108026											
MYOCD	93649	broad.mit.edu	37	chr17	12647645	12647645	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatggactcagcctacgctcGgctgctccagcaacagcagc	10	15	1	0	rs140013261	byFrequency	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12647645	C	C	12647645	3	2	113	1	0	0	0	0	1	0	0	0	10181	1116	39	4	893	4	MYOCD	17	12647645	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1126881	12647645	68547565	661	108027											
NUFIP2	57532	broad.mit.edu	37	chr17	27614038	27614038	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctctttggaggcaacagctGaagcatgctttcctttgggc	11	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27614038	A	A	27614038	3	1	113	1	0	0	0	0	1	0	0	0	10844	1294	45	4	1125	4	NUFIP2	17	27614038	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	14966393	27614038	53581172	662	108028											
CCDC55	84081	broad.mit.edu	37	chr17	28511912	28511912	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaagaaagagggcacagTaccaggcaccacacgaaagg	13	9	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28511912	G	G	28511912	3	3	113	1	0	0	0	0	1	0	0	0	2853	1635	57	5	923	5	CCDC55	17	28511912	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	897874	28511912	52683298	663	108029											
PEX12	5193	broad.mit.edu	37	chr17	33904575	33904575	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatcaaaccacctccacaaGaagccatagtgggtgggatt	9	11	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33904575	T	T	33904575	3	4	113	1	0	0	0	0	1	0	0	0	11835	933	33	3	925	3	PEX12	17	33904575	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	5392663	33904575	47290635	664	108030											
C17orf66	256957	broad.mit.edu	37	chr17	34185354	34185354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgagggttagtggggagGtgtgaaagatggattccctt	19	3	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34185354	T	T	34185354	1	4	113	0	1	0	0	0	0	0	0	0	1890	1276	44	3		3	C17orf66	17	34185354	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	280779	34185354	47009856	665	108031											
C17orf66	256957	broad.mit.edu	37	chr17	34192287	34192287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgctgatcatacaggtcGtgccagtgcgtgtagatctc	11	11	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34192287	T	T	34192287	3	4	113	1	0	0	0	0	1	0	0	0	1890	1136	40	3	1512	3	C17orf66	17	34192287	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	6933	34192287	47002923	666	108032											
CCL14	6358	broad.mit.edu	37	chr17	34310883	34310883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcctggacccacttgtcaCtggggttggtacagacggaa	13	10	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34310883	A	A	34310883	3	1	113	1	0	0	0	0	1	0	0	0	2913	565	20	3	49	3	CCL14	17	34310883	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	118596	34310883	46884327	667	108033											
CCL3	6348	broad.mit.edu	37	chr17	34417481	34417481	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaccactgtctgctgcccgTgtccttctgaagtctgaaac	9	13	3	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34417481	C	C	34417481	1	2	113	0	1	0	0	0	0	0	0	0	2929	1711	59	5		5	CCL3	17	34417481	5'UTR	SNP	T	TCGA-44-2668-01A-01W-0928-08	106598	34417481	46777729	668	108034											
ACACA	31	broad.mit.edu	37	chr17	35641900	35641900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagaagccataaaaacaCcacctatattttctggagac	5	10	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35641900	A	A	35641900	1	1	113	0	1	0	0	0	0	0	0	0	106	522	18	3		3	ACACA	17	35641900	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1224419	35641900	45553310	669	108035											
ERBB2	2064	broad.mit.edu	37	chr17	37864639	37864639	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaggcaggtcccactgcaGaggctgcggattgtgcgagg	18	9	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37864639	A	A	37864639	2	1	113	1	0	0	0	0	0	0	0	1	5248	933	33	4		4	ERBB2	17	37864639	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	2222739	37864639	43330571	670	108036											
GHDC	84514	broad.mit.edu	37	chr17	40344425	40344425	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccctgctctagggcctcCcggagctcagctgcccgttc	12	18	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40344425	T	T	40344425	2	4	113	1	0	0	0	0	0	0	0	1	6433	610	22	4		4	GHDC	17	40344425	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	2479786	40344425	40850785	671	108037											
EFTUD2	9343	broad.mit.edu	37	chr17	42931058	42931058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctgggcctgtcatggggCcatggcagagtagcagtctc	15	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42931058	A	A	42931058	1	1	113	0	1	0	0	0	0	0	0	0	5001	754	26	3		3	EFTUD2	17	42931058	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2586633	42931058	38264152	672	108038											
CRHR1	1394	broad.mit.edu	37	chr17	43907386	43907386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctacacatctgggctgGggtgatggaggtggcctacc	14	10	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43907386	T	T	43907386	1	4	113	0	1	0	0	0	0	0	0	0	3903	1247	43	2		2	CRHR1	17	43907386	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	976328	43907386	37287824	673	108039											
KPNB1	3837	broad.mit.edu	37	chr17	45755523	45755523	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagaggttgtattgaatactCttcagcaggcctcccaagcc	9	11	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45755523	G	G	45755523	3	3	113	1	0	0	0	0	1	0	0	0	8506	913	32	4	2285	4	KPNB1	17	45755523	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1848137	45755523	35439687	674	108040											
TTLL6	284076	broad.mit.edu	37	chr17	46863434	46863434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctttcggtgtgtctgggCtctgagcagtggtctcctca	13	11	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46863434	T	T	46863434	1	4	113	0	1	0	0	0	0	0	0	0	16857	812	28	4		4	TTLL6	17	46863434	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1107911	46863434	34331776	675	108041											
IGF2BP1	10642	broad.mit.edu	37	chr17	47075346	47075346	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaacaacggagacccgcacCttccggttcctctcccgcca	8	19	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47075346	A	A	47075346	1	1	113	0	1	0	0	0	0	0	0	0	7643	696	24	2		2	IGF2BP1	17	47075346	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	211912	47075346	34119864	676	108042											
MMD	23531	broad.mit.edu	37	chr17	53491543	53491543	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagttagcagcatgttcaTagcaagttggcttgtagcgg	12	7	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53491543	C	C	53491543	3	2	113	1	0	0	0	0	1	0	0	0	9736	1406	49	5	663	5	MMD	17	53491543	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	6416197	53491543	27703667	677	108043											
ANKFN1	162282	broad.mit.edu	37	chr17	54543774	54543774	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgagcccattaaagatcgaCatggaaacatactcatagtc	7	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54543774	G	G	54543774	3	3	113	1	0	0	0	0	1	0	0	0	625	478	17	4	1678	4	ANKFN1	17	54543774	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1052231	54543774	26651436	678	108044											
MTMR4	9110	broad.mit.edu	37	chr17	56569850	56569850	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccctgttttttgtcatacTaaatcatacaaaacatctta	3	9	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56569850	A	A	56569850	1	1	113	0	1	0	0	0	0	0	0	0	10040	1537	53	5		5	MTMR4	17	56569850	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	2026076	56569850	24625360	679	108045											
RPS6KB1	6198	broad.mit.edu	37	chr17	57970609	57970609	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttccgagacagggaagctGaggacatggcaggagtgttt	15	7	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57970609	A	A	57970609	3	1	113	1	0	0	0	0	1	0	0	0	13767	1291	45	4	66	4	RPS6KB1	17	57970609	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	1400759	57970609	23224601	680	108046											
USP32	84669	broad.mit.edu	37	chr17	58256678	58256678	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatccatactgcttgtgtCtgccatctttttgccatcag	6	12	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58256678	A	A	58256678	3	1	113	1	0	0	0	0	1	0	0	0	17190	913	32	3	65	3	USP32	17	58256678	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	286069	58256678	22938532	681	108047											
MRC2	9902	broad.mit.edu	37	chr17	60754829	60754829	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgggcctcggacaccaaActccggtattgctataaggt	12	11	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60754829	T	T	60754829	3	4	113	1	0	0	0	0	1	0	0	0	9852	40	2	5	2080	5	MRC2	17	60754829	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	2498151	60754829	20440381	682	108048											
GNA13	10672	broad.mit.edu	37	chr17	63010527	63010527	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcgtttgttccggaaacattCcaccaggaatttttggacgt	10	9	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63010527	G	G	63010527	3	3	113	1	0	0	0	0	1	0	0	0	6565	864	30	4	155	4	GNA13	17	63010527	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2255698	63010527	18184683	683	108049											
CCDC46	201134	broad.mit.edu	37	chr17	63957643	63957643	+	Frame_Shift_Del	DEL	C	-	-													cacctgccgcttaaactcttCcagagcggcatctgcctgct							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63957643	-	-	63957643	7	5	113	1	0	1	0	1	0	0	0	0	2845	864	30	0	1263	0	CCDC46	17	63957643	Frame_Shift_Del	DEL	C	TCGA-44-2668-01A-01W-0928-08	947116	63957643	17237567	684	108050											
HELZ	9931	broad.mit.edu	37	chr17	65147079	65147079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtgagccagatttggcCcacacactgtagtttgccaa	10	11	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65147079	A	A	65147079	1	1	113	0	1	0	0	0	0	0	0	0	7116	638	22	2		2	HELZ	17	65147079	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1189436	65147079	16048131	685	108051											
WIPI1	55062	broad.mit.edu	37	chr17	66430737	66430737	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcatagagcttttgcccatCagggacagagaacacccgga	10	12	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66430737	T	T	66430737	3	4	113	1	0	0	0	0	1	0	0	0	17497	826	29	4	716	4	WIPI1	17	66430737	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1283658	66430737	14764473	686	108052											
ABCA8	10351	broad.mit.edu	37	chr17	66913418	66913418	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaataacaataatacaAattcttcttgtgtgttgtaa	4	5	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66913418	T	T	66913418	1	4	113	0	1	0	0	0	0	0	0	0	38	29	1	5		5	ABCA8	17	66913418	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	482681	66913418	14281792	687	108053											
ABCA9	10350	broad.mit.edu	37	chr17	67020350	67020350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtcatctttacattttGttacctggaaatttgtttgt	6	6	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67020350	T	T	67020350	1	4	113	0	1	0	0	0	0	0	0	0	39	1392	48	3		3	ABCA9	17	67020350	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	106932	67020350	14174860	688	108054											
ABCA6	23460	broad.mit.edu	37	chr17	67102211	67102211	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgttttaactttaagaaaCggagccgtgccatggcaaag	11	8	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67102211	T	T	67102211	3	4	113	1	0	0	0	0	1	0	0	0	36	536	19	4	2406	4	ABCA6	17	67102211	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	81861	67102211	14092999	689	108055											
DNAI2	64446	broad.mit.edu	37	chr17	72297289	72297289	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttgggggccatctccctGgagttcgaatctactttggt	12	11	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72297289	A	A	72297289	2	1	113	1	0	0	0	0	0	0	0	1	4650	1335	47	4		4	DNAI2	17	72297289	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	5195078	72297289	8897921	690	108056											
EVPL	2125	broad.mit.edu	37	chr17	74019327	74019327	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggattaaatgcagttcCgtatcgccctctgatcacac	7	14	2	1	rs115238064	by1000genomes	TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74019327	T	T	74019327	1	4	113	0	1	0	0	0	0	0	0	0	5334	667	23	4		4	EVPL	17	74019327	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1722038	74019327	7175883	691	108057											
MGAT5B	146664	broad.mit.edu	37	chr17	74902072	74902072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagctgctgctcctctctGctgaccctctgtgttccgcc	9	17	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74902072	T	T	74902072	1	4	113	0	1	0	0	0	0	0	0	0	9642	1334	46	3		3	MGAT5B	17	74902072	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	882745	74902072	6293138	692	108058											
ENPP7	339221	broad.mit.edu	37	chr17	77710992	77710992	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtacgagctcatgtgccgGctgctgggcatcgtgcccga	15	12	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77710992	A	A	77710992	2	1	113	1	0	0	0	0	0	0	0	1	5177	1190	42	4		4	ENPP7	17	77710992	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	2808920	77710992	3484218	693	108059											
TBC1D16	125058	broad.mit.edu	37	chr17	77925310	77925310	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaacacgtcagacagcttgTccaggccgccgtggtggaag	15	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77925310	A	A	77925310	3	1	113	1	0	0	0	0	1	0	0	0	15724	1667	58	5	1307	5	TBC1D16	17	77925310	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	214318	77925310	3269900	694	108060											
CCDC57	284001	broad.mit.edu	37	chr17	80151915	80151915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctcggctctggagcttcCtctccagctcggcgttggtg	14	14	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80151915	A	A	80151915	3	1	113	1	0	0	0	0	1	0	0	0	2855	681	24	2	2080	2	CCDC57	17	80151915	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2226605	80151915	1043295	695	108061											
CSNK1D	1453	broad.mit.edu	37	chr17	80223565	80223565	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactggtaaagacctacctcCtccctgcatcatcttgtaga	7	13	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80223565	T	T	80223565	3	4	113	1	0	0	0	0	1	0	0	0	3986	690	24	4	1132	4	CSNK1D	17	80223565	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	71650	80223565	971645	696	108062											
LAMA1	284217	broad.mit.edu	37	chr18	6943380	6943380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgttatcctgccagcacCattgttgacatggaacaaga	9	10	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6943380	A	A	6943380	3	1	113	1	0	0	0	0	1	0	0	0	8677	594	21	2	369	2	LAMA1	18	6943380	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08		6943380	71133868	697	108063											
PTPRM	5797	broad.mit.edu	37	chr18	8076447	8076447	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttatttcctcccaccctcCtttagtcccaggtgctgttc	5	15	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8076447	G	G	8076447	1	3	113	0	1	0	0	0	0	0	0	0	12914	696	24	4		4	PTPRM	18	8076447	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1133067	8076447	70000801	698	108064											
FAM38B	63895	broad.mit.edu	37	chr18	10677740	10677740	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attagtaggaaaaaatacacTtacactggtgtttttgaact	7	5	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10677740	G	G	10677740	1	3	113	0	1	0	0	0	0	0	0	0	5606	1624	56	5		5	FAM38B	18	10677740	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	2601293	10677740	67399508	699	108065											
GNAL	2774	broad.mit.edu	37	chr18	11747117	11747117	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtgttctcagcgcagatcGaactgcccacgctgcccaca	10	15	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11747117	A	A	11747117	1	1	113	0	1	0	0	0	0	0	0	0	6571	1073	37	4		4	GNAL	18	11747117	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1069377	11747117	66330131	700	108066											
GNAL	2774	broad.mit.edu	37	chr18	11825092	11825092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatgctgccttctcagtaCtgaagtttcttgagtgcaag	9	8	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11825092	A	A	11825092	1	1	113	0	1	0	0	0	0	0	0	0	6571	580	20	3		3	GNAL	18	11825092	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	77975	11825092	66252156	701	108067											
SPIRE1	56907	broad.mit.edu	37	chr18	12479746	12479746	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagttggggctctgaggagCttcttccgctgtgcaggcac	15	10	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12479746	G	G	12479746	3	3	113	1	0	0	0	0	1	0	0	0	15189	796	28	4	946	4	SPIRE1	18	12479746	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	654654	12479746	65597502	702	108068											
POTEC	388468	broad.mit.edu	37	chr18	14533095	14533095	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagcatactctctggcCgtctgtccagatagatcttg	9	11	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14533095	A	A	14533095	2	1	113	1	0	0	0	0	0	0	0	1	12358	639	23	1		1	POTEC	18	14533095	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	2053349	14533095	63544153	703	108069											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851711	14851711	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaactgaaacagaaaacagtAacaaaaagggcatctcagta	7	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14851711	T	T	14851711	2	4	113	1	0	0	0	0	0	0	0	1	659	349	13	5		5	ANKRD30B	18	14851711	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	318616	14851711	63225537	704	108070											
DSC3	1825	broad.mit.edu	37	chr18	28604459	28604459	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgacgcataagcaatcaActgcaaaatagcaaaaagaa	7	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28604459	G	G	28604459	2	3	113	1	0	0	0	0	0	0	0	1	4807	57	2	5		5	DSC3	18	28604459	Silent	SNP	A	TCGA-44-2668-01A-01W-0928-08	13752748	28604459	49472789	705	108071											
C18orf34	374864	broad.mit.edu	37	chr18	30791950	30791950	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctcttcacagtcttttttCtcttgcatataatgatcaaa	3	10	5	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30791950	G	G	30791950	3	3	113	1	0	0	0	0	1	0	0	0	1920	912	32	4	471	4	C18orf34	18	30791950	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2187491	30791950	47285298	706	108072											
C18orf34	374864	broad.mit.edu	37	chr18	30903418	30903418	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttacttaacatttaatttCtaaatgctataattagtgtt	3	4	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30903418	T	T	30903418	1	4	113	0	1	0	0	0	0	0	0	0	1920	928	32	4		4	C18orf34	18	30903418	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	111468	30903418	47173830	707	108073											
FHOD3	80206	broad.mit.edu	37	chr18	34324149	34324149	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatcggggccatcaccaggtCagccaaggtatgtctgtgga	14	10	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34324149	A	A	34324149	4	1	113	1	0	0	0	0	0	1	0	0	5940	838	29	3	3587	3	FHOD3	18	34324149	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3420731	34324149	43753099	708	108074											
KIAA1632	57724	broad.mit.edu	37	chr18	43497731	43497731	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccactgttctcaaatgtcttGactggaccagaattcccaat	6	12	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43497731	C	C	43497731	4	2	113	1	0	0	0	0	0	1	0	0	8319	1294	45	4	4699	4	KIAA1632	18	43497731	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	9173582	43497731	34579517	709	108075											
HAUS1	115106	broad.mit.edu	37	chr18	43698346	43698346	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggtcttaaagactttttGttctcagcataattctatat	5	6	3	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43698346	A	A	43698346	1	1	113	0	1	0	0	0	0	0	0	0	7031	1392	48	4		4	HAUS1	18	43698346	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	200615	43698346	34378902	710	108076											
HDHD2	84064	broad.mit.edu	37	chr18	44656797	44656797	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcaagtgcaaacttttgcTgtatccataatttaaaattt	4	6	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44656797	A	A	44656797	1	1	113	0	1	0	0	0	0	0	0	0	7090	1595	55	5		5	HDHD2	18	44656797	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	958451	44656797	33420451	711	108077											
CDH20	28316	broad.mit.edu	37	chr18	59166451	59166451	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacaggggagacggatcCatcaaatacatcctctcggg	12	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59166451	A	A	59166451	2	1	113	1	0	0	0	0	0	0	0	1	3136	581	21	2		2	CDH20	18	59166451	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	14509654	59166451	18910797	712	108078											
SERPINB4	6318	broad.mit.edu	37	chr18	61324130	61324130	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatctttgcctttgtatgGtatttccaggaccttggcct	9	9	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61324130	A	A	61324130	3	1	113	1	0	0	0	0	1	0	0	0	14216	1261	44	4		4	SERPINB4	18	61324130	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2157679	61324130	16753118	713	108079											
SERPINB8	5271	broad.mit.edu	37	chr18	61654176	61654176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagttgacaaaaagtaaGgttcaagttttccttcccag	8	7	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61654176	T	T	61654176	3	4	113	1	0	0	0	0	1	0	0	0	14220	991	35	2	824	2	SERPINB8	18	61654176	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	330046	61654176	16423072	714	108080											
CDH7	1005	broad.mit.edu	37	chr18	63547963	63547963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccttatgactccctgCagacatatgcttttgaagga	7	12	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63547963	A	A	63547963	3	1	113	1	0	0	0	0	1	0	0	0	3145	711	25	3	2233	3	CDH7	18	63547963	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1893787	63547963	14529285	715	108081											
CNDP2	55748	broad.mit.edu	37	chr18	72179781	72179781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgggtaagtgcgggatGgcattcagtccgcagttgag	16	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72179781	T	T	72179781	1	4	113	0	1	0	0	0	0	0	0	0	3626	1363	47	2		2	CNDP2	18	72179781	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	8631818	72179781	5897467	716	108082											
EMR1	2015	broad.mit.edu	37	chr19	6897298	6897298	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtcccaggaaagccggGcaatttctcctgtactggta	12	11	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6897298	A	A	6897298	3	1	113	1	0	0	0	0	1	0	0	0	5146	1203	42	4	391	4	EMR1	19	6897298	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08		6897298	52231685	717	108083											
MUC16	94025	broad.mit.edu	37	chr19	9024497	9024497	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctctgatgggtgaaacCtgcatagagaaggagggagg	17	5	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9024497	A	A	9024497	5	1	113	1	0	0	0	0	0	0	1	0	10067	695	24	2	6759	2	MUC16	19	9024497	Splice_Site	SNP	C	TCGA-44-2668-01A-01W-0928-08	2127199	9024497	50104486	718	108084											
MUC16	94025	broad.mit.edu	37	chr19	9049935	9049935	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaccagtgaggctgtggtctCtgattctctattgaaaacag	11	8	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9049935	G	G	9049935	3	3	113	1	0	0	0	0	1	0	0	0	10067	922	32	4	12147	4	MUC16	19	9049935	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	25438	9049935	50079048	719	108085											
MUC16	94025	broad.mit.edu	37	chr19	9057909	9057909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtatcgtccacagcggagGtgatacccattgaaggtatg	13	8	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9057909	C	C	9057909	3	2	113	1	0	0	0	0	1	0	0	0	10067	1261	44	4	14314	4	MUC16	19	9057909	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	7974	9057909	50071074	720	108086											
MUC16	94025	broad.mit.edu	37	chr19	9075971	9075971	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgatctgggcacctgcccTggatgtgcagaagtggtggt	16	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9075971	G	G	9075971	2	3	113	1	0	0	0	0	0	0	0	1	10067	1567	55	5		5	MUC16	19	9075971	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	18062	9075971	50053012	721	108087											
ZNF559	84527	broad.mit.edu	37	chr19	9450100	9450100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggctgcattggtaaacaGgcgaaacattgtttccatct	10	8	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9450100	T	T	9450100	1	4	113	0	1	0	0	0	0	0	0	0	18117	1015	35	2		2	ZNF559	19	9450100	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	374129	9450100	49678883	722	108088											
SMARCA4	6597	broad.mit.edu	37	chr19	11107160	11107160	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcctgaccgtgtctctctCtatttccagaaggcagaaaa	10	11	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11107160	T	T	11107160	1	4	113	0	1	0	0	0	0	0	0	0	14884	928	32	4		4	SMARCA4	19	11107160	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	1657060	11107160	48021823	723	108089											
PRKCSH	5589	broad.mit.edu	37	chr19	11558265	11558265	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccgccaggcactgcccacCgaccttccagcaccttctgc	7	21	1	0	rs149732361		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11558265	T	T	11558265	2	4	113	1	0	0	0	0	0	0	0	1	12622	639	23	4		4	PRKCSH	19	11558265	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	451105	11558265	47570718	724	108090											
ZNF563	147837	broad.mit.edu	37	chr19	12432051	12432051	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttactctgagaatcacttCagaaacataactttctcctg	4	10	4	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12432051	A	A	12432051	1	1	113	0	1	0	0	0	0	0	0	0	18121	841	29	3		3	ZNF563	19	12432051	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	873786	12432051	46696932	725	108091											
NOTCH3	4854	broad.mit.edu	37	chr19	15277961	15277961	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacccttcacagaagcttaGagactcccccagttctcccc	5	18	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15277961	C	C	15277961	1	2	113	0	1	0	0	0	0	0	0	0	10645	957	33	4		4	NOTCH3	19	15277961	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2845910	15277961	43851022	726	108092											
CYP4F2	8529	broad.mit.edu	37	chr19	16003139	16003139	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgcatgatgttcacactctCattgaaaatcttcatatagg	7	8	4	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16003139	G	G	16003139	3	3	113	1	0	0	0	0	1	0	0	0	4221	835	29	4	1093	4	CYP4F2	19	16003139	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	725178	16003139	43125844	727	108093											
FAM129C	199786	broad.mit.edu	37	chr19	17664237	17664237	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcagcttctctgctgtcTtgcagctgcttccggagtgg	13	11	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17664237	C	C	17664237	2	2	113	1	0	0	0	0	0	0	0	1	5484	1596	56	5		5	FAM129C	19	17664237	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	1661098	17664237	41464746	728	108094											
ZNF208	7757	broad.mit.edu	37	chr19	22193727	22193727	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgagaccttgacctccggCtgcagcgagagacaaaggac	13	12	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22193727	A	A	22193727	1	1	113	0	1	0	0	0	0	0	0	0	17892	812	28	3		3	ZNF208	19	22193727	5'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	4529490	22193727	36935256	729	108095											
ZNF99	7652	broad.mit.edu	37	chr19	22951200	22951200	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctagcttagagacagcgaTacctgttttattaaaaataa	7	6	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22951200	A	A	22951200	3	1	113	1	0	0	0	0	1	0	0	0	18333	1406	49	5	2936	5	ZNF99	19	22951200	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	757473	22951200	36177783	730	108096											
ZNF681	148213	broad.mit.edu	37	chr19	23941486	23941486	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattgtggagctgactgcggCgaggtctgagtcccgccaca	14	11	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23941486	G	G	23941486	1	3	113	0	1	0	0	0	0	0	0	0	18215	783	27	4		4	ZNF681	19	23941486	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	990286	23941486	35187497	731	108097											
ZNF536	9745	broad.mit.edu	37	chr19	30936620	30936620	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaggacagcccgcacccCtcctcgccatcctcctcagg	9	20	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30936620	A	A	30936620	2	1	113	1	0	0	0	0	0	0	0	1	18101	668	24	2		2	ZNF536	19	30936620	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	6995134	30936620	28192363	732	108098											
C19orf40	91442	broad.mit.edu	37	chr19	33464996	33464996	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaaggaattgtagtcgttGaaaaaacccggatgagtgaa	11	4	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33464996	C	C	33464996	3	2	113	1	0	0	0	0	1	0	0	0	1942	1291	45	4	284	4	C19orf40	19	33464996	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2528376	33464996	25663987	733	108099											
HCST	10870	broad.mit.edu	37	chr19	36393498	36393498	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccagaccccagtccaccatGatccatctgggtcacatcct	7	17	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36393498	T	T	36393498	3	4	113	1	0	0	0	0	1	0	0	0	7070	1290	45	3	5	3	HCST	19	36393498	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2928502	36393498	22735485	734	108100											
ZNF383	163087	broad.mit.edu	37	chr19	37726793	37726793	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctttctttggctgttcctGtagtggcatctcttcctgtg	9	10	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37726793	A	A	37726793	1	1	113	0	1	0	0	0	0	0	0	0	18000	1392	48	4		4	ZNF383	19	37726793	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1333295	37726793	21402190	735	108101											
ZNF780A	284323	broad.mit.edu	37	chr19	40587735	40587735	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcacttacctggataccGtctgcttgtttctttcctta	5	14	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40587735	A	A	40587735	3	1	113	1	0	0	0	0	1	0	0	0	18281	1144	40	4	1837	4	ZNF780A	19	40587735	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2860942	40587735	18541248	736	108102											
TOMM40	10452	broad.mit.edu	37	chr19	45406198	45406198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaggtctggaagctgtcGgcatgtggctggtatccaag	14	7	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45406198	T	T	45406198	1	4	113	0	1	0	0	0	0	0	0	0	16481	1131	39	1		1	TOMM40	19	45406198	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	4818463	45406198	13722785	737	108103											
RSPH6A	81492	broad.mit.edu	37	chr19	46303752	46303752	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagaggttggagcgcacaAcggccactgagtactgcggg	16	11	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46303752	G	G	46303752	3	3	113	1	0	0	0	0	1	0	0	0	13818	43	2	5	293	5	RSPH6A	19	46303752	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	897554	46303752	12825231	738	108104											
PRMT1	3276	broad.mit.edu	37	chr19	50188237	50188237	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagatgtggccattaaggaGcccctagtggatgtcgtgga	14	7	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50188237	A	A	50188237	2	1	113	1	0	0	0	0	0	0	0	1	12641	962	34	4		4	PRMT1	19	50188237	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	3884485	50188237	8940746	739	108105											
NLRP2	55655	broad.mit.edu	37	chr19	55508760	55508760	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctgcaaccagagcctcgtCactctggacctgggtcagaa	11	13	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55508760	T	T	55508760	2	4	113	1	0	0	0	0	0	0	0	1	10572	813	29	4		4	NLRP2	19	55508760	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	5320523	55508760	3620223	740	108106											
PEG3	5178	broad.mit.edu	37	chr19	57327996	57327996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggcctaaaggtttccCcgcgctcacgttcacgttca	11	14	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57327996	A	A	57327996	3	1	113	1	0	0	0	0	1	0	0	0	11814	623	22	2	2956	2	PEG3	19	57327996	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1819236	57327996	1800987	741	108107											
ZNF814	730051	broad.mit.edu	37	chr19	58384132	58384132	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcctttctccagtgtgaacTctctggtgtgcaatgaggtg	13	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58384132	A	A	58384132	1	1	113	0	1	0	0	0	0	0	0	0	18305	1566	54	5		5	ZNF814	19	58384132	3'UTR	SNP	T	TCGA-44-2668-01A-01W-0928-08	1056136	58384132	744851	742	108108											
ANGPT4	51378	broad.mit.edu	37	chr20	869027	869027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggttctccagcttgttgGtggacagaaaggtctctggc	14	9	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	869027	A	A	869027	3	1	113	1	0	0	0	0	1	0	0	0	612	1261	44	4	1018	4	ANGPT4	20	869027	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08		869027	62156493	743	108109											
PTPRA	5786	broad.mit.edu	37	chr20	2987924	2987924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagatgtctcaactgtcctGgttgcgtcaggttctgtgag	12	9	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2987924	T	T	2987924	1	4	113	0	1	0	0	0	0	0	0	0	12903	1363	47	2		2	PTPRA	20	2987924	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2118897	2987924	60037596	744	108110											
C20orf194	25943	broad.mit.edu	37	chr20	3295651	3295652	+	Intron	DNP	CC	AA	AA													aatgagggacccagacatggCcaaaaacattaaagtcatag							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	3295652	AA	AA	3295651	1	1	113	0	1	0	0	0	0	0	0	0	2121	754	26	3		3	C20orf194	20	3295651	Intron	DNP	CC	TCGA-44-2668-01A-01W-0928-08	307727	3295651	59729869	745	108111											
ATRN	8455	broad.mit.edu	37	chr20	3470667	3470667	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgagatgttgctgttccCtgagagtcagagtattcata	12	6	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3470667	T	T	3470667	1	4	113	0	1	0	0	0	0	0	0	0	1210	696	24	4		4	ATRN	20	3470667	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	175016	3470667	59554853	746	108112											
MACROD2	140733	broad.mit.edu	37	chr20	14066278	14066278	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctattacagaagaaaatactCaggaaacatcccaggtgaag	8	8	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14066278	T	T	14066278	4	4	113	1	0	0	0	0	0	1	0	0	9234	827	29	4	185	4	MACROD2	20	14066278	Nonsense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	10595611	14066278	48959242	747	108113											
SLC24A3	57419	broad.mit.edu	37	chr20	19634836	19634836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttaagcaccaggggtGgtgtgaggctcctccacatg	12	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19634836	T	T	19634836	1	4	113	0	1	0	0	0	0	0	0	0	14581	1363	47	2		2	SLC24A3	20	19634836	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	5568558	19634836	43390684	748	108114											
C20orf3	57136	broad.mit.edu	37	chr20	24964571	24964571	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctataggagattccagCagcatcatggctccaagcag	11	10	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24964571	A	A	24964571	2	1	113	1	0	0	0	0	0	0	0	1	2131	697	25	3		3	C20orf3	20	24964571	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	5329735	24964571	38060949	749	108115											
ZNF337	26152	broad.mit.edu	37	chr20	25667111	25667111	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatggccaatctgtgggaGgagagaagtcagagggtggc	18	6	2	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25667111	C	C	25667111	1	2	113	0	1	0	0	0	0	0	0	0	17979	1015	35	4		4	ZNF337	20	25667111	5'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	702540	25667111	37358409	750	108116											
TPX2	22974	broad.mit.edu	37	chr20	30388777	30388777	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccttactttgcaggtgcAtaaggcaaatccaatacgca	7	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30388777	G	G	30388777	3	3	113	1	0	0	0	0	1	0	0	0	16556	217	8	5	2200	5	TPX2	20	30388777	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	4721666	30388777	32636743	751	108117											
BPIL3	128859	broad.mit.edu	37	chr20	31619551	31619551	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatggacatcatgaaccGtggtgagcttgtgggcccgg	17	9	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31619551	T	T	31619551	5	4	113	1	0	0	0	0	0	0	1	0	1502	1159	40	3	100	3	BPIL3	20	31619551	Splice_Site	SNP	G	TCGA-44-2668-01A-01W-0928-08	1230774	31619551	31405969	752	108118											
GDF5	8200	broad.mit.edu	37	chr20	34021748	34021748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgaccatgtcctcatactGcttatacaccacgttgttgg	7	13	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34021748	T	T	34021748	3	4	113	1	0	0	0	0	1	0	0	0	6380	1328	46	3	44	3	GDF5	20	34021748	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2402197	34021748	29003772	753	108119											
WFDC6	140870	broad.mit.edu	37	chr20	44163207	44163207	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacattaggaaccaaatctTgcacctaatgggaaaaagga	8	9	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44163207	G	G	44163207	1	3	113	0	1	0	0	0	0	0	0	0	17482	1827	63	5		5	WFDC6	20	44163207	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	10141459	44163207	18862313	754	108120											
SLC12A5	57468	broad.mit.edu	37	chr20	44673596	44673596	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggcatctcctgtccacaTcattccaggtttggcgaagc	9	14	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44673596	A	A	44673596	1	1	113	0	1	0	0	0	0	0	0	0	14499	1450	50	5		5	SLC12A5	20	44673596	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	510389	44673596	18351924	755	108121											
SS18L1	26039	broad.mit.edu	37	chr20	60740594	60740594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcacggctgcgtgctgGgctcgagcgtaagcgccaca	16	12	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60740594	T	T	60740594	1	4	113	0	1	0	0	0	0	0	0	0	15294	1247	43	2		2	SS18L1	20	60740594	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	16066998	60740594	2284926	756	108122											
MYT1	4661	broad.mit.edu	37	chr20	62844832	62844832	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacacacacagacacccagGacaggacaggcatggagggg	13	13	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62844832	T	T	62844832	1	4	113	0	1	0	0	0	0	0	0	0	10200	1189	41	3		3	MYT1	20	62844832	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2104238	62844832	180688	757	108123											
TPTE	7179	broad.mit.edu	37	chr21	10920118	10920118	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttactccctgaaatttttcgCtgtgggttttatctgttcgc	8	9	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10920118	G	G	10920118	3	3	113	1	0	0	0	0	1	0	0	0	16554	797	28	4	543	4	TPTE	21	10920118	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08		10920118	37209777	758	108124											
CYYR1	116159	broad.mit.edu	37	chr21	27945230	27945230	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttcggaagcaagaccccTggacgcacgggtagcctcgg	13	13	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27945230	A	A	27945230	2	1	113	1	0	0	0	0	0	0	0	1	4244	1567	55	5		5	CYYR1	21	27945230	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	17025112	27945230	20184665	759	108125											
N6AMT1	29104	broad.mit.edu	37	chr21	30252230	30252230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacataggggggattaaacaCcagaagatcaactttttcgg	10	7	1	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30252230	A	A	30252230	3	1	113	1	0	0	0	0	1	0	0	0	10208	507	18	3	298	3	N6AMT1	21	30252230	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	2307000	30252230	17877665	760	108126											
KRTAP8-1	337879	broad.mit.edu	37	chr21	32185390	32185390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcctgtagccgaaagccCcacagccgttgtagccatag	9	14	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32185390	A	A	32185390	3	1	113	1	0	0	0	0	1	0	0	0	8644	623	22	2	46	2	KRTAP8-1	21	32185390	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	1933160	32185390	15944505	761	108127											
ABCG1	9619	broad.mit.edu	37	chr21	43706025	43706025	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggacaatgtgtgtaccgGggaaaagtctgcaatcttgt	12	7	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43706025	T	T	43706025	2	4	113	1	0	0	0	0	0	0	0	1	68	1219	43	2		2	ABCG1	21	43706025	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	11520635	43706025	4423870	762	108128											
TMPRSS3	64699	broad.mit.edu	37	chr21	43796717	43796717	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggggagatgatgccaccgTacacgtccctgtggttgcag	15	10	0	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43796717	C	C	43796717	3	2	113	1	0	0	0	0	1	0	0	0	16371	1638	57	5	249	5	TMPRSS3	21	43796717	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	90692	43796717	4333178	763	108129											
PKNOX1	5316	broad.mit.edu	37	chr21	44441505	44441505	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcctgccaaagcatgccacGaacgtgatgcggtcctggct	12	13	0	1	rs148642401		TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44441505	T	T	44441505	2	4	113	1	0	0	0	0	0	0	0	1	12077	1045	37	3		3	PKNOX1	21	44441505	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	644788	44441505	3688390	764	108130											
C21orf29	54084	broad.mit.edu	37	chr21	46097383	46097383	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcttcaaagctcttggctAgagactcagttttaacttgt	7	9	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46097383	G	G	46097383	1	3	113	0	1	0	0	0	0	0	0	0	2146	435	15	5		5	C21orf29	21	46097383	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	1655878	46097383	2032512	765	108131											
TUBA8	51807	broad.mit.edu	37	chr22	18613793	18613793	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtatgtgggagaggggatgGaagaaggagaattttctgag	19	1	1	4			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18613793	A	A	18613793	3	1	113	1	0	0	0	0	1	0	0	0	16876	1175	41	4	1258	4	TUBA8	22	18613793	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08		18613793	32690773	766	108132											
PI4KA	5297	broad.mit.edu	37	chr22	21119259	21119259	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggagggagagaaacatccGagggctcatggggcatcccc	15	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21119259	A	A	21119259	1	1	113	0	1	0	0	0	0	0	0	0	11968	1073	37	4		4	PI4KA	22	21119259	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	2505466	21119259	30185307	767	108133											
PI4KA	5297	broad.mit.edu	37	chr22	21174934	21174934	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaagaaaaaaaaaacaTaaacaaaattaggtaaatat	4	3	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21174934	A	A	21174934	1	1	113	0	1	0	0	0	0	0	0	0	11968	1421	49	5		5	PI4KA	22	21174934	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	55675	21174934	30129632	768	108134											
ZNF70	7621	broad.mit.edu	37	chr22	24087463	24087463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagcagctcatatgtgcCtgcttcatatcctagaatct	7	11	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24087463	A	A	24087463	1	1	113	0	1	0	0	0	0	0	0	0	18230	696	24	2		2	ZNF70	22	24087463	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	2912529	24087463	27217103	769	108135											
HPS4	89781	broad.mit.edu	37	chr22	26860726	26860726	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgttttctttcagggcagaTgtgctcccaccctttggatg	11	11	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26860726	A	A	26860726	2	1	113	1	0	0	0	0	0	0	0	1	7408	1451	51	5		5	HPS4	22	26860726	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	2773263	26860726	24443840	770	108136											
SLC5A1	6523	broad.mit.edu	37	chr22	32482262	32482262	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatattgcggtaccaaggtTggctgtaccaacatcgccta	9	10	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32482262	A	A	32482262	2	1	113	1	0	0	0	0	0	0	0	1	14775	1799	63	5		5	SLC5A1	22	32482262	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	5621536	32482262	18822304	771	108137											
SLC5A4	6527	broad.mit.edu	37	chr22	32631037	32631037	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggatggggtggcattcacGtacttctcggtaaagctctc	12	10	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32631037	T	T	32631037	4	4	113	1	0	0	0	0	0	1	0	0	14781	1140	40	3	1303	3	SLC5A4	22	32631037	Nonsense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	148775	32631037	18673529	772	108138											
SYN3	8224	broad.mit.edu	37	chr22	32934062	32934062	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagcatggcagagcctgTgttggccttccagttcccag	11	14	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32934062	C	C	32934062	3	2	113	1	0	0	0	0	1	0	0	0	15561	1696	59	5	814	5	SYN3	22	32934062	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	303025	32934062	18370504	773	108139											
RBM9	23543	broad.mit.edu	37	chr22	36218099	36218099	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagagagggccagcctttcTgccttgtctcactcttcttt	8	12	4	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36218099	G	G	36218099	1	3	113	0	1	0	0	0	0	0	0	0	13255	1595	55	5		5	RBM9	22	36218099	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	3284037	36218099	15086467	774	108140											
TMPRSS6	164656	broad.mit.edu	37	chr22	37480376	37480376	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccctgggtgcacggcaaAtcatacttctgcctcctcag	10	14	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37480376	T	T	37480376	3	4	113	1	0	0	0	0	1	0	0	0	16374	98	4	5	1289	5	TMPRSS6	22	37480376	Missense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	1262277	37480376	13824190	775	108141											
APOBEC3D	140564	broad.mit.edu	37	chr22	39428331	39428331	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccagtgaggggtctccCtgggcctcatggtctgtctc	12	13	5	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39428331	T	T	39428331	1	4	113	0	1	0	0	0	0	0	0	0	794	696	24	4		4	APOBEC3D	22	39428331	3'UTR	SNP	C	TCGA-44-2668-01A-01W-0928-08	1947955	39428331	11876235	776	108142											
MEI1	150365	broad.mit.edu	37	chr22	42095478	42095478	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caccgacgcaggtccgtcctCcaagtgcgcatgcgtgcagt	12	15	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42095478	G	G	42095478	1	3	113	0	1	0	0	0	0	0	0	0	9558	870	30	4		4	MEI1	22	42095478	5'Flank	SNP	C	TCGA-44-2668-01A-01W-0928-08	2667147	42095478	9209088	777	108143											
DHRSX	207063	broad.mit.edu	37	chrX	2209645	2209645	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacagtataaaaattccaCtggaaaaggacaacaacaaa	6	8	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2209645	A	A	2209645	5	1	113	1	0	0	0	0	0	0	1	0	4539	579	20	3	722	3	DHRSX	23	2209645	Splice_Site	SNP	C	TCGA-44-2668-01A-01W-0928-08		2209645	153060915	778	108144											
ARSD	414	broad.mit.edu	37	chrX	2832920	2832921	+	Intron	INS	-	TA	TA													gcccccattctttgtactatINStattattattaaagagacag							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	2832921	TA	TA	2832920	6	5	113	0	1	1	1	0	0	0	0	0	993	1508	52	0		0	ARSD	23	2832920	Intron	INS	-	TCGA-44-2668-01A-01W-0928-08	623275	2832920	152437640	779	108145											
BMX	660	broad.mit.edu	37	chrX	15536146	15536146	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattttaaaaatgtttttcaTggtcaggatatattaaataa	5	3	2	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15536146	A	A	15536146	1	1	113	0	1	0	0	0	0	0	0	0	1479	1479	51	5		5	BMX	23	15536146	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	12703226	15536146	139734414	780	108146											
TMEM47	83604	broad.mit.edu	37	chrX	34648523	34648523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggccaggccataaccCcagttgaactcatggtaaat	8	14	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648523	A	A	34648523	3	1	113	1	0	0	0	0	1	0	0	0	16294	624	22	2	96	2	TMEM47	23	34648523	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	19112377	34648523	120622037	781	108147											
SRPX	8406	broad.mit.edu	37	chrX	38031335	38031335	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgagaaaatcagatattCagcatttcttagtttttgtc	6	5	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38031335	T	T	38031335	1	4	113	0	1	0	0	0	0	0	0	0	15282	841	29	4		4	SRPX	23	38031335	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	3382812	38031335	117239225	782	108148											
USP9X	8239	broad.mit.edu	37	chrX	41064746	41064746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattttggaaacagttcaGgtaaactatggatggacagt	12	4	1	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41064746	T	T	41064746	3	4	113	1	0	0	0	0	1	0	0	0	17217	1014	35	2	5137	2	USP9X	23	41064746	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	3033411	41064746	114205814	783	108149											
SSX3	10214	broad.mit.edu	37	chrX	48209509	48209509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgggccagatgcttctgGcacttccttcgaaacatttc	9	11	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48209509	T	T	48209509	3	4	113	1	0	0	0	0	1	0	0	0	15323	1203	42	3	246	3	SSX3	23	48209509	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	7144763	48209509	107061051	784	108150											
KDM5C	8242	broad.mit.edu	37	chrX	53244106	53244106	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgatttacagccctgtaTaggctagtcatgctaggtct	10	8	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53244106	C	C	53244106	1	2	113	0	1	0	0	0	0	0	0	0	8205	1421	49	5		5	KDM5C	23	53244106	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	5034597	53244106	102026454	785	108151											
DACH2	117154	broad.mit.edu	37	chrX	85415503	85415503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcaatcttttccttcagtAcagcaaacttgcatgcagtg	7	10	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85415503	G	G	85415503	1	3	113	0	1	0	0	0	0	0	0	0	4254	406	14	5		5	DACH2	23	85415503	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	32171397	85415503	69855057	786	108152											
PCDH11X	27328	broad.mit.edu	37	chrX	91133049	91133049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattatggagacaattctGcagttacgctctccatttta	7	9	2	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91133049	T	T	91133049	3	4	113	1	0	0	0	0	1	0	0	0	11602	1319	46	3	1816	3	PCDH11X	23	91133049	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	5717546	91133049	64137511	787	108153											
ZMAT1	84460	broad.mit.edu	37	chrX	101166871	101166871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcatgaaaggacgcacaCtggggaaaagtcccatgggt	13	10	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101166871	T	T	101166871	1	4	113	0	1	0	0	0	0	0	0	0	17817	580	20	4		4	ZMAT1	23	101166871	Intron	SNP	C	TCGA-44-2668-01A-01W-0928-08	10033822	101166871	54103689	788	108154											
GPRASP2	114928	broad.mit.edu	37	chrX	101972152	101972152	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgttattaaaatgtttcaGaatatcagtaacattataaa	4	3	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101972152	A	A	101972152	2	1	113	1	0	0	0	0	0	0	0	1	6789	933	33	4		4	GPRASP2	23	101972152	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	805281	101972152	53298408	789	108155											
H2BFWT	158983	broad.mit.edu	37	chrX	103267765	103267765	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacagccttcgtgccttcGgactcggcgagcttgcccat	12	14	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103267765	A	A	103267765	2	1	113	1	0	0	0	0	0	0	0	1	6998	1103	39	4		4	H2BFWT	23	103267765	Silent	SNP	G	TCGA-44-2668-01A-01W-0928-08	1295613	103267765	52002795	790	108156											
COL4A6	1288	broad.mit.edu	37	chrX	107418937	107418937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcccatttttccagttgatCctggaattccttttaatcct	5	11	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107418937	A	A	107418937	3	1	113	1	0	0	0	0	1	0	0	0	3727	855	30	3	2363	3	COL4A6	23	107418937	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	4151172	107418937	47851623	791	108157											
COL4A6	1288	broad.mit.edu	37	chrX	107447623	107447623	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtggaggtcctgctgggCcagggaggccaacatccccc	15	13	0	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107447623	G	G	107447623	3	3	113	1	0	0	0	0	1	0	0	0	3727	739	26	4	4501	4	COL4A6	23	107447623	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	28686	107447623	47822937	792	108158											
DCX	1641	broad.mit.edu	37	chrX	110654246	110654246	+	5'UTR	DEL	C	-	-													ctctaatgtgtgcatcccctCcccccagaataaactaagat							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110654246	-	-	110654246	6	5	113	0	1	1	0	1	0	0	0	0	4351	870	30	0		0	DCX	23	110654246	5'UTR	DEL	C	TCGA-44-2668-01A-01W-0928-08	3206623	110654246	44616314	793	108159											
AMOT	154796	broad.mit.edu	37	chrX	112024171	112024171	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccatgatgggggagccagTcagggtggatgagtgggaga	19	5	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112024171	A	A	112024171	3	1	113	1	0	0	0	0	1	0	0	0	582	1667	58	5	850	5	AMOT	23	112024171	Missense_Mutation	SNP	T	TCGA-44-2668-01A-01W-0928-08	1369925	112024171	43246389	794	108160											
HTR2C	3358	broad.mit.edu	37	chrX	114010104	114010104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcttgatgaggacaggaGgacagtcatgactccaccag	12	9	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114010104	T	T	114010104	1	4	113	0	1	0	0	0	0	0	0	0	7513	1015	35	2		2	HTR2C	23	114010104	Intron	SNP	G	TCGA-44-2668-01A-01W-0928-08	1985933	114010104	41260456	795	108161											
KIAA1210	57481	broad.mit.edu	37	chrX	118227917	118227917	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttcttaatggaattgttTccaccaagagatccttgggg	10	7	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118227917	C	C	118227917	1	2	113	0	1	0	0	0	0	0	0	0	8284	1798	62	5		5	KIAA1210	23	118227917	Intron	SNP	T	TCGA-44-2668-01A-01W-0928-08	4217813	118227917	37042643	796	108162											
TFDP3	51270	broad.mit.edu	37	chrX	132351139	132351139	+	Silent	SNP	T	C	C													tcctcttcctcctcgactgcTggggtctccaccctggagcc							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132351139	C	C	132351139	2	2	113	1	0	0	0	0	0	0	0	1	15922	1567	55	5		5	TFDP3	23	132351139	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	14123222	132351139	22919421	797	108163	466	2									
TFDP3	51270	broad.mit.edu	37	chrX	132351141	132351141	+	Missense_Mutation	SNP	G	T	T													ctcttcctcctcgactgctgGggtctccaccctggagccac							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132351141	T	T	132351141	3	4	113	1	0	0	0	0	1	0	0	0	15922	1232	43	2	74	2	TFDP3	23	132351141	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2	132351141	22919419	798	108164	466	2									
GPR112	139378	broad.mit.edu	37	chrX	135438316	135438316	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaagagatggtcatggatCgagctattgtaagtaatttt	12	3	1	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135438316	A	A	135438316	2	1	113	1	0	0	0	0	0	0	0	1	6694	876	31	3		3	GPR112	23	135438316	Silent	SNP	C	TCGA-44-2668-01A-01W-0928-08	3087175	135438316	19832244	799	108165											
ATP11C	286410	broad.mit.edu	37	chrX	138825775	138825775	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggttccaaaagtccagttTccgtatacctgaaaaacatt	6	9	0	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138825775	C	C	138825775	2	2	113	1	0	0	0	0	0	0	0	1	1125	1770	62	5		5	ATP11C	23	138825775	Silent	SNP	T	TCGA-44-2668-01A-01W-0928-08	3387459	138825775	16444785	800	108166											
ATP11C	286410	broad.mit.edu	37	chrX	138879495	138879495	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattaatagatctgaaaaatAagatagcatggattttaaaa	6	3	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138879495	T	T	138879495	1	4	113	0	1	0	0	0	0	0	0	0	1125	377	13	5		5	ATP11C	23	138879495	Intron	SNP	A	TCGA-44-2668-01A-01W-0928-08	53720	138879495	16391065	801	108167											
SPANXN3	139067	broad.mit.edu	37	chrX	142605176	142605176	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttattggattcacaggggCtcttcgtcttctccccattg	9	11	4	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142605176	G	G	142605176	3	3	113	1	0	0	0	0	1	0	0	0	15108	797	28	4	389	4	SPANXN3	23	142605176	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3725681	142605176	12665384	802	108168											
SLITRK2	84631	broad.mit.edu	37	chrX	144903924	144903924	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcctgtaggtacctgagttGacaccgaaggtgcctaaaga	12	9	0	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144903924	T	T	144903924	1	4	113	0	1	0	0	0	0	0	0	0	14857	1305	45	3		3	SLITRK2	23	144903924	5'UTR	SNP	G	TCGA-44-2668-01A-01W-0928-08	2298748	144903924	10366636	803	108169											
AFF2	2334	broad.mit.edu	37	chrX	147744265	147744265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagactaaactgccaaaGttcaccatcctccaaacaag	4	13	2	1			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147744265	T	T	147744265	3	4	113	1	0	0	0	0	1	0	0	0	357	1020	36	3	1027	3	AFF2	23	147744265	Missense_Mutation	SNP	G	TCGA-44-2668-01A-01W-0928-08	2840341	147744265	7526295	804	108170											
PASD1	139135	broad.mit.edu	37	chrX	150840204	150840204	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttatctttatccaactctCtcaaaaacactggggagctt	6	10	3	0			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150840204	G	G	150840204	3	3	113	1	0	0	0	0	1	0	0	0	11565	913	32	4	1436	4	PASD1	23	150840204	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	3095939	150840204	4430356	805	108171											
PASD1	139135	broad.mit.edu	37	chrX	150841089	150841089	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacaacagccctctggcttCtatcaagatgaaaactgtgg	9	10	3	2			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150841089	G	G	150841089	3	3	113	1	0	0	0	0	1	0	0	0	11565	912	32	4	1922	4	PASD1	23	150841089	Missense_Mutation	SNP	C	TCGA-44-2668-01A-01W-0928-08	885	150841089	4429471	806	108172											
FATE1	89885	broad.mit.edu	37	chrX	150889897	150889897	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccaaagcccagaatgctgAgagaatcaggccatggggat	13	9	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150889897	T	T	150889897	4	4	113	1	0	0	0	0	0	1	0	0	5750	296	11	5	275	5	FATE1	23	150889897	Nonsense_Mutation	SNP	A	TCGA-44-2668-01A-01W-0928-08	48808	150889897	4380663	807	108173											
IL9R	3581	broad.mit.edu	37	chrX	155234092	155234093	+	Missense_Mutation	DNP	GG	CT	CT													cactctgttccagttaagctGgacccgccctctgacttgca							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	155234093	CT	CT	155234092	3	2	113	1	0	0	0	0	1	0	0	0	7778	1335	47	4	459	4	IL9R	23	155234092	Missense_Mutation	DNP	GG	TCGA-44-2668-01A-01W-0928-08	4344195	155234092	36468	808	108174											
TSPY1	7258	broad.mit.edu	37	chrY	9305908	9305908	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccaccttgtcctgacaGgtgggagaagagaagcatcc	11	11	1	3			TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9305908	T	T	9305908	5	4	113	1	0	0	0	0	0	0	1	0	16782	1014	35	2	574	2	TSPY1	24	9305908	Splice_Site	SNP	G	TCGA-44-2668-01A-01W-0928-08		9305908	50067658	809	108175											
RPS4Y2	140032	broad.mit.edu	37	chrY	22923177	22923179	+	In_Frame_Del	DEL	CAG	-	-													tgtttgtgatcagatgtcatCagcattgagaaaacaggtga							TCGA-44-2668-01A-01W-0928-08	TCGA-44-2668-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22923179	-	-	22923177	7	5	113	1	0	1	0	1	0	0	0	0	13758	816	29	0	284	0	RPS4Y2	24	22923177	In_Frame_Del	DEL	CAG	TCGA-44-2668-01A-01W-0928-08	13617269	22923177	36450389	810	108176											
SCNN1D	6339	broad.mit.edu	37	chr1	1222560	1222560	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctgtccaggactggtaCcacttccactatgtggatat	11	11	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1222560	A	A	1222560	4	1	114	1	0	0	0	0	0	1	0	0	14042	518	18	3	919	3	SCNN1D	1	1222560	Nonsense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08		1222560	248028061	1	108177											
MAD2L2	10459	broad.mit.edu	37	chr1	11740467	11740467	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcccacggggtagacctcGcgcacgtagaggatgagatg	15	10	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11740467	T	T	11740467	2	4	114	1	0	0	0	0	0	0	0	1	9238	1074	38	3		3	MAD2L2	1	11740467	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	10517907	11740467	237510154	2	108178											
NBPF1	55672	broad.mit.edu	37	chr1	16900007	16900007	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagagtgttgctgcaatacGgacttatatcaccagataac	8	8	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16900007	A	A	16900007	1	1	114	0	1	0	0	0	0	0	0	0	10286	1131	39	4		4	NBPF1	1	16900007	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	5159540	16900007	232350614	3	108179											
RCC2	55920	broad.mit.edu	37	chr1	17755624	17755624	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtttaggcacttctttTcgaccaatcaagtcccagtt	7	11	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17755624	A	A	17755624	2	1	114	1	0	0	0	0	0	0	0	1	13282	1770	62	5		5	RCC2	1	17755624	Silent	SNP	T	TCGA-44-3396-01A-01D-1265-08	855617	17755624	231494997	4	108180											
UBR4	23352	broad.mit.edu	37	chr1	19410972	19410972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgggtctgcgagatgCcgcccctgggacacagggta	17	11	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19410972	T	T	19410972	1	4	114	0	1	0	0	0	0	0	0	0	17030	754	26	4		4	UBR4	1	19410972	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1655348	19410972	229839649	5	108181											
TMCO4	255104	broad.mit.edu	37	chr1	20020902	20020902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaagcaaacgcaaagccCcaggaggaacaggccgacac	10	13	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20020902	A	A	20020902	1	1	114	0	1	0	0	0	0	0	0	0	16121	638	22	2		2	TMCO4	1	20020902	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	609930	20020902	229229719	6	108182											
KIF17	57576	broad.mit.edu	37	chr1	21014237	21014237	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatctcagatttggagggttCcaccttgggcagctccgcaa	11	11	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21014237	T	T	21014237	3	4	114	1	0	0	0	0	1	0	0	0	8349	864	30	4	1539	4	KIF17	1	21014237	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	993335	21014237	228236384	7	108183											
USP48	84196	broad.mit.edu	37	chr1	22030794	22030794	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtttctgaagggtttacatCtcccacttcaattctcgtga	7	10	4	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22030794	G	G	22030794	3	3	114	1	0	0	0	0	1	0	0	0	17206	913	32	4	663	4	USP48	1	22030794	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	1016557	22030794	227219827	8	108184											
RHCE	6006	broad.mit.edu	37	chr1	25712420	25712420	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacacccttggtatccggCgccaccaaatggggatgggc	12	14	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25712420	G	G	25712420	1	3	114	0	1	0	0	0	0	0	0	0	13434	783	27	4		4	RHCE	1	25712420	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	3681626	25712420	223538201	9	108185											
DHDDS	79947	broad.mit.edu	37	chr1	26774059	26774059	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccctcctcaggtgtttcctGaatgtctgttttgcatacac	7	12	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26774059	T	T	26774059	2	4	114	1	0	0	0	0	0	0	0	1	4518	1277	45	3		3	DHDDS	1	26774059	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	1061639	26774059	222476562	10	108186											
PRPF38A	84950	broad.mit.edu	37	chr1	52870579	52870579	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagcgcgcggagcgcctctCagcccccttgtggcccattt	12	16	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52870579	G	G	52870579	1	3	114	0	1	0	0	0	0	0	0	0	12673	841	29	4		4	PRPF38A	1	52870579	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	26096520	52870579	196380042	11	108187											
LRRC7	57554	broad.mit.edu	37	chr1	70460372	70460372	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagccagaaactaaaggatAtattgagttttctaattcaa	6	5	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70460372	T	T	70460372	1	4	114	0	1	0	0	0	0	0	0	0	9107	464	16	5		5	LRRC7	1	70460372	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	17589793	70460372	178790249	12	108188											
C1orf173	127254	broad.mit.edu	37	chr1	75038823	75038823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgcttgtcctatgggGtctgaccccccttcacccag	10	16	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75038823	T	T	75038823	3	4	114	1	0	0	0	0	1	0	0	0	2034	1252	44	3	2025	3	C1orf173	1	75038823	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	4578451	75038823	174211798	13	108189											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76779523	76779523	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgtgagcttcatagcaGcgttccttttcctgctggtt	10	10	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76779523	A	A	76779523	3	1	114	1	0	0	0	0	1	0	0	0	15343	971	34	4	58	4	ST6GALNAC3	1	76779523	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1740700	76779523	172471098	14	108190											
FUBP1	8880	broad.mit.edu	37	chr1	78428753	78428753	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgacaatattgtattaagaTttttcatttaatattctaca	3	4	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78428753	C	C	78428753	1	2	114	0	1	0	0	0	0	0	0	0	6152	1508	52	5		5	FUBP1	1	78428753	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	1649230	78428753	170821868	15	108191											
TTLL7	79739	broad.mit.edu	37	chr1	84383358	84383358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacattgctccagaagatCcaaaatatcttcttccttca	3	12	4	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84383358	A	A	84383358	3	1	114	1	0	0	0	0	1	0	0	0	16858	855	30	3	1179	3	TTLL7	1	84383358	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	5954605	84383358	164867263	16	108192											
WDR63	126820	broad.mit.edu	37	chr1	85559916	85559916	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taacagtacatgtcagtttgGaccagccagatttcaagtgc	9	9	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85559916	C	C	85559916	1	2	114	0	1	0	0	0	0	0	0	0	17441	1189	41	4		4	WDR63	1	85559916	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1176558	85559916	163690705	17	108193											
GBP6	163351	broad.mit.edu	37	chr1	89846103	89846103	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaactggatcccaaattcCaggaacaaacaaacattttc	5	11	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89846103	T	T	89846103	4	4	114	1	0	0	0	0	0	1	0	0	6340	595	21	4	802	4	GBP6	1	89846103	Nonsense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4286187	89846103	159404518	18	108194											
PPM1J	333926	broad.mit.edu	37	chr1	113253122	113253122	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataggccgacagcaccctgtCcacagtggcagctacctcac	9	16	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113253122	G	G	113253122	3	3	114	1	0	0	0	0	1	0	0	0	12443	855	30	4	195	4	PPM1J	1	113253122	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	23407019	113253122	135997499	19	108195											
NBPF10	100132406	broad.mit.edu	37	chr1	145311442	145311442	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcaaaattattgaggacaTgcttttcatgatcactgttc	7	7	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145311442	G	G	145311442	1	3	114	0	1	0	0	0	0	0	0	0	10287	1479	51	5		5	NBPF10	1	145311442	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	32058320	145311442	103939179	20	108196											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	114	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-44-3396-01A-01D-1265-08	6431118	151742560	97508061	21	108197											
HRNR	388697	broad.mit.edu	37	chr1	152191367	152191367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cactgctggaagaccgaccgGagccagacccatgtcggcca	12	15	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152191367	T	T	152191367	3	4	114	1	0	0	0	0	1	0	0	0	7426	1174	41	3	5818	3	HRNR	1	152191367	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	448807	152191367	97059254	22	108198											
ADAR	103	broad.mit.edu	37	chr1	154561024	154561024	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagcaacaggaactgtacaGacctgatatacagatggaat	10	8	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154561024	C	C	154561024	1	2	114	0	1	0	0	0	0	0	0	0	281	957	33	4		4	ADAR	1	154561024	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	2369657	154561024	94689597	23	108199											
SHC1	6464	broad.mit.edu	37	chr1	154940731	154940731	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcatgtggtggttggcgatGatctgagaattagggcaggg	18	4	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154940731	A	A	154940731	2	1	114	1	0	0	0	0	0	0	0	1	14383	1280	45	4		4	SHC1	1	154940731	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	379707	154940731	94309890	24	108200											
SMG5	23381	broad.mit.edu	37	chr1	156248853	156248853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatacaggcaaatatcccCtcagccatatgcatggtcca	7	12	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156248853	T	T	156248853	1	4	114	0	1	0	0	0	0	0	0	0	14910	696	24	4		4	SMG5	1	156248853	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1308122	156248853	93001768	25	108201											
RGS4	5999	broad.mit.edu	37	chr1	163042677	163042677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtctgacagcaacctgGgatgaggtactctggataag	13	7	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163042677	T	T	163042677	1	4	114	0	1	0	0	0	0	0	0	0	13416	1247	43	2		2	RGS4	1	163042677	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	6793824	163042677	86207944	26	108202											
RABGAP1L	9910	broad.mit.edu	37	chr1	174190066	174190066	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcataaaatttagcttcagAactatggtagaattgaaaca	6	5	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174190066	T	T	174190066	1	4	114	0	1	0	0	0	0	0	0	0	13073	261	9	5		5	RABGAP1L	1	174190066	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	11147389	174190066	75060555	27	108203											
NPL	80896	broad.mit.edu	37	chr1	182763626	182763626	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gttctcattcaaccaaaaagGagagaagttctttgtaacaa	7	7	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182763626	C	C	182763626	1	2	114	0	1	0	0	0	0	0	0	0	10680	1189	41	4		4	NPL	1	182763626	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	8573560	182763626	66486995	28	108204											
FAM129A	116496	broad.mit.edu	37	chr1	184863220	184863220	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtcttacctctttattctCatagctctccacagcataat	4	12	4	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184863220	T	T	184863220	3	4	114	1	0	0	0	0	1	0	0	0	5482	835	29	4	2527	4	FAM129A	1	184863220	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	2099594	184863220	64387401	29	108205											
ASPM	259266	broad.mit.edu	37	chr1	197112595	197112595	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttttgaaacgttggcacTgtgtacatttaatagttccc	7	8	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197112595	G	G	197112595	3	3	114	1	0	0	0	0	1	0	0	0	1060	1580	55	5	9750	5	ASPM	1	197112595	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	12249375	197112595	52138026	30	108206											
KIF21B	23046	broad.mit.edu	37	chr1	200950287	200950287	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagactgtggccaggctgatCaaggcacgtgtgtgggatgg	18	7	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200950287	T	T	200950287	1	4	114	0	1	0	0	0	0	0	0	0	8359	841	29	4		4	KIF21B	1	200950287	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	3837692	200950287	48300334	31	108207											
PPP1R15B	84919	broad.mit.edu	37	chr1	204379201	204379201	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcagcttcctcatcccaatCctcaccttctggatcagaac	4	17	5	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204379201	G	G	204379201	3	3	114	1	0	0	0	0	1	0	0	0	12465	855	30	4	810	4	PPP1R15B	1	204379201	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	3428914	204379201	44871420	32	108208											
SLC26A9	115019	broad.mit.edu	37	chr1	205890767	205890767	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggatgagggtgtggaagGtgacgaagggtgggacgctg	21	5	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205890767	C	C	205890767	3	2	114	1	0	0	0	0	1	0	0	0	14638	1261	44	4	709	4	SLC26A9	1	205890767	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1511566	205890767	43359854	33	108209											
CENPF	1063	broad.mit.edu	37	chr1	214819010	214819010	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttaaaagacaaaactcatCtccaggaaaagctgcagagt	8	8	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214819010	G	G	214819010	3	3	114	1	0	0	0	0	1	0	0	0	3261	913	32	4	6143	4	CENPF	1	214819010	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	8928243	214819010	34431611	34	108210											
ENAH	55740	broad.mit.edu	37	chr1	225707424	225707424	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaggctaccttggatagaGactgtttcatacaaatgaaa	9	6	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225707424	A	A	225707424	1	1	114	0	1	0	0	0	0	0	0	0	5153	957	33	4		4	ENAH	1	225707424	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	10888414	225707424	23543197	35	108211											
OBSCN	84033	broad.mit.edu	37	chr1	228491841	228491841	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccccatccctgcgtgttctCtgttcctcttgggccatgtg	9	15	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228491841	G	G	228491841	1	3	114	0	1	0	0	0	0	0	0	0	10907	928	32	4		4	OBSCN	1	228491841	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2784417	228491841	20758780	36	108212											
RYR2	6262	broad.mit.edu	37	chr1	237804323	237804323	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagtttctgggagttcagGagcagcaatcctgatttctc	12	8	3	2	rs76265079	byFrequency;by1000genomes	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237804323	T	T	237804323	1	4	114	0	1	0	0	0	0	0	0	0	13880	1189	41	3		3	RYR2	1	237804323	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	9312482	237804323	11446298	37	108213											
OR2C3	81472	broad.mit.edu	37	chr1	247694892	247694892	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcagagccacagcagttctCtaataccatgtgccggaggg	12	11	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247694892	T	T	247694892	3	4	114	1	0	0	0	0	1	0	0	0	11087	922	32	4	44	4	OR2C3	1	247694892	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	9890569	247694892	1555729	38	108214											
C1orf150	148823	broad.mit.edu	37	chr1	247719676	247719676	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtggagggcagtaacAatctctcttttttcttatgt	8	6	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247719676	T	T	247719676	1	4	114	0	1	0	0	0	0	0	0	0	2024	145	5	5		5	C1orf150	1	247719676	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	24784	247719676	1530945	39	108215											
OR2L13	284521	broad.mit.edu	37	chr1	248166400	248166400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtcttaacttactcgtGtctcccttccggatggattg	8	11	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248166400	T	T	248166400	1	4	114	0	1	0	0	0	0	0	0	0	11100	1392	48	3		3	OR2L13	1	248166400	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	446724	248166400	1084221	40	108216											
KIDINS220	57498	broad.mit.edu	37	chr2	8931289	8931289	+	Frame_Shift_Del	DEL	C	-	-													aggctcactgagaatatctgCcagggcactgctatataaat							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8931289	-	-	8931289	7	5	114	1	0	1	0	1	0	0	0	0	8341	739	26	0	4045	0	KIDINS220	2	8931289	Frame_Shift_Del	DEL	C	TCGA-44-3396-01A-01D-1265-08		8931289	234268084	41	108217											
APOB	338	broad.mit.edu	37	chr2	21241854	21241854	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatgaggcagctgtgttttGaatactcaccttctgcttga	10	8	2	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21241854	C	C	21241854	1	2	114	0	1	0	0	0	0	0	0	0	787	1305	45	4		4	APOB	2	21241854	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	12310565	21241854	221957519	42	108218											
TP53I3	9540	broad.mit.edu	37	chr2	24306971	24306971	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgtggagcggtgcacgCcttcacgtctggtcaatgtc	15	10	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24306971	A	A	24306971	1	1	114	0	1	0	0	0	0	0	0	0	16511	754	26	3		3	TP53I3	2	24306971	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	3065117	24306971	218892402	43	108219											
ITSN2	50618	broad.mit.edu	37	chr2	24537990	24537990	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcactaataaaactaattaTaaatacaaacctgttatgta	2	6	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24537990	A	A	24537990	1	1	114	0	1	0	0	0	0	0	0	0	7997	1421	49	5		5	ITSN2	2	24537990	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	231019	24537990	218661383	44	108220											
SLC30A3	7781	broad.mit.edu	37	chr2	27480930	27480930	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagcccccagagtctctgCgggtggggggggagacaagc	17	11	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27480930	T	T	27480930	1	4	114	0	1	0	0	0	0	0	0	0	14670	783	27	4		4	SLC30A3	2	27480930	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2942940	27480930	215718443	45	108221											
RHOQ	23433	broad.mit.edu	37	chr2	46770874	46770874	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagcttctctccccgccCccacttctgtccttgcagtc	7	18	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46770874	G	G	46770874	1	3	114	0	1	0	0	0	0	0	0	0	13451	638	22	4		4	RHOQ	2	46770874	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	19289944	46770874	196428499	46	108222											
FSHR	2492	broad.mit.edu	37	chr2	49381586	49381586	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatccacctgatttcttcCtgcatttgcagagaaaaacc	5	13	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49381586	T	T	49381586	1	4	114	0	1	0	0	0	0	0	0	0	6133	696	24	4		4	FSHR	2	49381586	5'UTR	SNP	C	TCGA-44-3396-01A-01D-1265-08	2610712	49381586	193817787	47	108223											
C2orf86	51057	broad.mit.edu	37	chr2	63666936	63666936	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttccccaccaggcttctgtCaatcaccactttctccagct	4	18	4	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63666936	A	A	63666936	3	1	114	1	0	0	0	0	1	0	0	0	2223	826	29	3	1860	3	C2orf86	2	63666936	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	14285350	63666936	179532437	48	108224											
MOGS	7841	broad.mit.edu	37	chr2	74690085	74690085	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctatttaggcgactcttTaccatctctgtcagcagggg	10	11	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74690085	G	G	74690085	2	3	114	1	0	0	0	0	0	0	0	1	9791	1741	61	5		5	MOGS	2	74690085	Silent	SNP	T	TCGA-44-3396-01A-01D-1265-08	11023149	74690085	168509288	49	108225											
DOK1	1796	broad.mit.edu	37	chr2	74783669	74783669	+	Frame_Shift_Del	DEL	C	-	-													cccaagagctcctcgacagtCccccagccctgtatgctgag							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74783669	-	-	74783669	7	5	114	1	0	1	0	1	0	0	0	0	4736	855	30	0	892	0	DOK1	2	74783669	Frame_Shift_Del	DEL	C	TCGA-44-3396-01A-01D-1265-08	93584	74783669	168415704	50	108226											
RETSAT	54884	broad.mit.edu	37	chr2	85576437	85576437	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcctactccttctggtctCagggagaccccaggtctcgc	9	16	4	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85576437	T	T	85576437	1	4	114	0	1	0	0	0	0	0	0	0	13346	841	29	4		4	RETSAT	2	85576437	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	10792768	85576437	157622936	51	108227											
RETSAT	54884	broad.mit.edu	37	chr2	85576586	85576586	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgcccccagcccgctgaatCacagggatggtgtggaaggc	15	13	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85576586	T	T	85576586	2	4	114	1	0	0	0	0	0	0	0	1	13346	813	29	4		4	RETSAT	2	85576586	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	149	85576586	157622787	52	108228											
SFTPB	6439	broad.mit.edu	37	chr2	85894748	85894749	+	Intron	DNP	CC	AA	AA													cctgcccatccagagcccacCcagcacccttcatttcagac							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	85894749	AA	AA	85894748	1	1	114	0	1	0	0	0	0	0	0	0	14304	638	22	2		2	SFTPB	2	85894748	Intron	DNP	CC	TCGA-44-3396-01A-01D-1265-08	318162	85894748	157304625	53	108229											
C2orf40	84417	broad.mit.edu	37	chr2	106694260	106694260	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctattggcttaacagagatCgaaatggacatgaatactat	8	7	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106694260	A	A	106694260	2	1	114	1	0	0	0	0	0	0	0	1	2187	876	31	3		3	C2orf40	2	106694260	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	20799512	106694260	136505113	54	108230											
CKAP2L	150468	broad.mit.edu	37	chr2	113509757	113509757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttctacttagatgaaggCtatctctcctatattatatt	4	7	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113509757	A	A	113509757	1	1	114	0	1	0	0	0	0	0	0	0	3474	812	28	3		3	CKAP2L	2	113509757	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	6815497	113509757	129689616	55	108231											
IL1F6	27179	broad.mit.edu	37	chr2	113763598	113763598	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagcattcaggatatcaatCatcgggtgtgggttcttcag	13	7	5	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113763598	T	T	113763598	3	4	114	1	0	0	0	0	1	0	0	0	7724	826	29	4	64	4	IL1F6	2	113763598	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	253841	113763598	129435775	56	108232											
MKI67IP	84365	broad.mit.edu	37	chr2	122488554	122488554	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaatcgctcctccatcCgtagcttttgtgttagtgtc	7	10	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122488554	T	T	122488554	3	4	114	1	0	0	0	0	1	0	0	0	9692	652	23	4	418	4	MKI67IP	2	122488554	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	8724956	122488554	120710819	57	108233											
ACMSD	130013	broad.mit.edu	37	chr2	135621051	135621051	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctaccccaggaggttcgtGggtctggggacgttgcccat	15	11	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135621051	A	A	135621051	2	1	114	1	0	0	0	0	0	0	0	1	144	1335	47	4		4	ACMSD	2	135621051	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	13132497	135621051	107578322	58	108234											
THSD7B	80731	broad.mit.edu	37	chr2	138373849	138373849	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggtgcagccttgcctcctGaatgaaaattgcttccagtt	9	11	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138373849	A	A	138373849	2	1	114	1	0	0	0	0	0	0	0	1	16003	1277	45	4		4	THSD7B	2	138373849	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	2752798	138373849	104825524	59	108235											
LRP1B	53353	broad.mit.edu	37	chr2	141607652	141607652	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaacacttttaaagttgtaAcatgtacgaatcttttacct	4	8	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141607652	T	T	141607652	1	4	114	0	1	0	0	0	0	0	0	0	9042	58	2	5		5	LRP1B	2	141607652	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	3233803	141607652	101591721	60	108236											
PLA2R1	22925	broad.mit.edu	37	chr2	160836348	160836348	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaaagacttacaggagttCtatcagaccactcccatgag	8	10	2	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160836348	G	G	160836348	3	3	114	1	0	0	0	0	1	0	0	0	12105	913	32	4	2206	4	PLA2R1	2	160836348	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	19228696	160836348	82363025	61	108237											
GAD1	2571	broad.mit.edu	37	chr2	171699063	171699063	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaccaggaatccttctcttCttcttcctttatcaggccat	4	13	4	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171699063	T	T	171699063	1	4	114	0	1	0	0	0	0	0	0	0	6239	928	32	4		4	GAD1	2	171699063	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	10862715	171699063	71500310	62	108238											
HOXD8	3234	broad.mit.edu	37	chr2	176995902	176995903	+	Intron	INS	-	TA	TA													ctcctcttgcctgcacacccINStatatatatatatcggagct					rs138795034	by1000genomes	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	176995903	TA	TA	176995902	6	5	114	0	1	1	1	0	0	0	0	0	7392	696	24	0		0	HOXD8	2	176995902	Intron	INS	-	TCGA-44-3396-01A-01D-1265-08	5296839	176995902	66203471	63	108239											
TTN	7273	broad.mit.edu	37	chr2	179479392	179479392	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttaggttcaggttttccGgttacggtggcaggaagttc	13	6	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179479392	T	T	179479392	2	4	114	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179479392	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	2483490	179479392	63719981	64	108240											
SSFA2	6744	broad.mit.edu	37	chr2	182763893	182763893	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgctatagatgacctactCttatcattttttcaatcttg	5	8	4	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182763893	G	G	182763893	1	3	114	0	1	0	0	0	0	0	0	0	15301	928	32	4		4	SSFA2	2	182763893	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	3284501	182763893	60435480	65	108241											
DNAH7	56171	broad.mit.edu	37	chr2	196664163	196664163	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaatgcacgtcccaatcTgttgattataaattcctgca	6	9	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196664163	C	C	196664163	3	2	114	1	0	0	0	0	1	0	0	0	4646	1588	55	5	1908	5	DNAH7	2	196664163	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	13900270	196664163	46535210	66	108242											
SPAG16	79582	broad.mit.edu	37	chr2	215274887	215274887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttttagctcaggcaagtGgcaatggtgttatccatttg	12	6	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215274887	T	T	215274887	3	4	114	1	0	0	0	0	1	0	0	0	15094	1348	47	2	1822	2	SPAG16	2	215274887	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	18610724	215274887	27924486	67	108243											
MREG	55686	broad.mit.edu	37	chr2	216811893	216811893	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggcttaaacctctatctCattcccaaacttcatgttgc	4	13	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216811893	G	G	216811893	1	3	114	0	1	0	0	0	0	0	0	0	9854	841	29	4		4	MREG	2	216811893	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1537006	216811893	26387480	68	108244											
WDFY1	57590	broad.mit.edu	37	chr2	224759080	224759080	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaacagcacacacaacagtCacttgtctccatgcggaaaa	6	13	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224759080	G	G	224759080	1	3	114	0	1	0	0	0	0	0	0	0	17395	841	29	4		4	WDFY1	2	224759080	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	7947187	224759080	18440293	69	108245											
WDFY1	57590	broad.mit.edu	37	chr2	224759127	224759127	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaactgtcttcatttaggctCaaattgctctcctcattaaa	5	10	5	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224759127	G	G	224759127	1	3	114	0	1	0	0	0	0	0	0	0	17395	841	29	4		4	WDFY1	2	224759127	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	47	224759127	18440246	70	108246											
SERPINE2	5270	broad.mit.edu	37	chr2	224847476	224847476	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcagcggctccttcaaatCtgtttgtgctacagctgtga	9	10	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224847476	G	G	224847476	3	3	114	1	0	0	0	0	1	0	0	0	14225	913	32	4	305	4	SERPINE2	2	224847476	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	88349	224847476	18351897	71	108247											
COL4A4	1286	broad.mit.edu	37	chr2	227924124	227924124	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcaaagccctcataccttCagcccctggacatcccggat	7	17	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227924124	T	T	227924124	3	4	114	1	0	0	0	0	1	0	0	0	3725	835	29	4	2776	4	COL4A4	2	227924124	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	3076648	227924124	15275249	72	108248											
SP140	11262	broad.mit.edu	37	chr2	231108311	231108311	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttactgaaggactgaatcctCaggtcaggttgtttggggag	14	6	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231108311	T	T	231108311	1	4	114	0	1	0	0	0	0	0	0	0	15076	841	29	4		4	SP140	2	231108311	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	3184187	231108311	12091062	73	108249											
GIGYF2	26058	broad.mit.edu	37	chr2	233655925	233655925	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttttttcctccatcaaaCcaaaactttcgtaagttcaa	2	11	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233655925	G	G	233655925	1	3	114	0	1	0	0	0	0	0	0	0	6442	522	18	4		4	GIGYF2	2	233655925	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2547614	233655925	9543448	74	108250											
DGKD	8527	broad.mit.edu	37	chr2	234358641	234358641	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcacagctgtcgatgagcaGaatgcccagacccaggagca	12	12	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234358641	C	C	234358641	3	2	114	1	0	0	0	0	1	0	0	0	4507	933	33	4	1988	4	DGKD	2	234358641	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	702716	234358641	8840732	75	108251											
ATP2B2	491	broad.mit.edu	37	chr3	10429876	10429876	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtagaaggcactcaataActattttgttgagtgaacaa	9	6	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10429876	C	C	10429876	1	2	114	0	1	0	0	0	0	0	0	0	1144	58	2	5		5	ATP2B2	3	10429876	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08		10429876	187592554	76	108252											
CCDC13	152206	broad.mit.edu	37	chr3	42777198	42777198	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgccagtgccctactcaCgtgcacattgagttgtccga	10	14	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42777198	T	T	42777198	5	4	114	1	0	0	0	0	0	0	1	0	2791	550	19	4	803	4	CCDC13	3	42777198	Splice_Site	SNP	C	TCGA-44-3396-01A-01D-1265-08	32347322	42777198	155245232	77	108253											
CCR2	729230	broad.mit.edu	37	chr3	46399605	46399605	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtggcccttattttccacGaggatggaataatttccaca	8	10	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46399605	A	A	46399605	3	1	114	1	0	0	0	0	1	0	0	0	2971	1058	37	4	589	4	CCR2	3	46399605	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	3622407	46399605	151622825	78	108254											
KIF9	64147	broad.mit.edu	37	chr3	47298931	47298931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcagcaaacccatacaCtttccccacagtgggacacc	6	17	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47298931	T	T	47298931	1	4	114	0	1	0	0	0	0	0	0	0	8380	580	20	4		4	KIF9	3	47298931	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	899326	47298931	150723499	79	108255											
SCAP	22937	broad.mit.edu	37	chr3	47456233	47456233	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctgttcttcatcaggactCttccagcctctccctgacga	6	16	6	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47456233	G	G	47456233	1	3	114	0	1	0	0	0	0	0	0	0	13989	928	32	4		4	SCAP	3	47456233	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	157302	47456233	150566197	80	108256			1	86		3	3	407	C		1.260815e-05
SCAP	22937	broad.mit.edu	37	chr3	47456482	47456482	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaactgccccgccctggggtCcctgaggacaaaaggccaag	13	14	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47456482	A	A	47456482	2	1	114	1	0	0	0	0	0	0	0	1	13989	869	30	3		3	SCAP	3	47456482	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	249	47456482	150565948	81	108257			1	86		3	3	407	C		1.260815e-05
SCAP	22937	broad.mit.edu	37	chr3	47456639	47456639	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtctccaaggagaagaaatCaagggaaccgttgagccgtg	14	8	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47456639	G	G	47456639	3	3	114	1	0	0	0	0	1	0	0	0	13989	826	29	4	771	4	SCAP	3	47456639	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	157	47456639	150565791	82	108258			1	86		3	3	407	C		1.260815e-05
MAP4	4134	broad.mit.edu	37	chr3	47969958	47969958	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatcctatctagctagtGtcttacaagaaaactttttt	4	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47969958	A	A	47969958	1	1	114	0	1	0	0	0	0	0	0	0	9350	1392	48	4		4	MAP4	3	47969958	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	513319	47969958	150052472	83	108259											
CELSR3	1951	broad.mit.edu	37	chr3	48677227	48677227	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggcccaagggtgtgcttGaagattgcacagaggagagg	18	6	0	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48677227	A	A	48677227	3	1	114	1	0	0	0	0	1	0	0	0	3253	1294	45	4	155	4	CELSR3	3	48677227	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	707269	48677227	149345203	84	108260											
P4HTM	54681	broad.mit.edu	37	chr3	49042348	49042348	+	Silent	SNP	G	T	T													gtggagctcagcgagccgctGcaggttgttcgatatggtga							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49042348	T	T	49042348	2	4	114	1	0	0	0	0	0	0	0	1	11454	1306	46	3		3	P4HTM	3	49042348	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	365121	49042348	148980082	85	108261	467	2									
P4HTM	54681	broad.mit.edu	37	chr3	49042350	49042350	+	Missense_Mutation	SNP	A	C	C													ggagctcagcgagccgctgcAggttgttcgatatggtgagg							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49042350	C	C	49042350	3	2	114	1	0	0	0	0	1	0	0	0	11454	188	7	5	966	5	P4HTM	3	49042350	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	2	49042350	148980080	86	108262	467	2									
LAMB2	3913	broad.mit.edu	37	chr3	49161339	49161339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctaggcgctgtgtacGggctgccaagtcctgcacca	12	14	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49161339	A	A	49161339	3	1	114	1	0	0	0	0	1	0	0	0	8683	1116	39	4	1813	4	LAMB2	3	49161339	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	118989	49161339	148861091	87	108263											
MST1	4485	broad.mit.edu	37	chr3	49724892	49724892	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacccaaccccattgttcatGatgcaggtccgtacgtagtc	8	13	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49724892	A	A	49724892	2	1	114	1	0	0	0	0	0	0	0	1	9984	1280	45	4		4	MST1	3	49724892	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	563553	49724892	148297538	88	108264											
FLNB	2317	broad.mit.edu	37	chr3	58080588	58080588	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcccactggaaacatggtGaagcagccagccaagttcac	11	12	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58080588	T	T	58080588	2	4	114	1	0	0	0	0	0	0	0	1	5992	1277	45	3		3	FLNB	3	58080588	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	8355696	58080588	139941842	89	108265											
ADAMTS9	56999	broad.mit.edu	37	chr3	64519034	64519034	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatacaataaaaggtactTtggaaaagagaaggatgttg	12	2	0	2	rs1015860	by1000genomes	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64519034	C	C	64519034	1	2	114	0	1	0	0	0	0	0	0	0	273	1856	64	5		5	ADAMTS9	3	64519034	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	6438446	64519034	133503396	90	108266											
ROBO1	6091	broad.mit.edu	37	chr3	79067493	79067493	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatacacttctgggtttgatCgtgcaaagtggagagggggc	15	6	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79067493	T	T	79067493	1	4	114	0	1	0	0	0	0	0	0	0	13624	899	31	4		4	ROBO1	3	79067493	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	14548459	79067493	118954937	91	108267											
KIAA2018	205717	broad.mit.edu	37	chr3	113375010	113375010	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtattcctctgatgttctGagagtgacctctggctccca	10	11	3	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113375010	C	C	113375010	4	2	114	1	0	0	0	0	0	1	0	0	8338	1294	45	4	1222	4	KIAA2018	3	113375010	Nonsense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	34307517	113375010	84647420	92	108268											
KIAA1407	57577	broad.mit.edu	37	chr3	113697695	113697695	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttaaggtacccttccctAtgtccttacctgtagccagc	6	13	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113697695	G	G	113697695	1	3	114	0	1	0	0	0	0	0	0	0	8299	464	16	5		5	KIAA1407	3	113697695	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	322685	113697695	84324735	93	108269											
FSTL1	11167	broad.mit.edu	37	chr3	120115857	120115857	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtttcctttgagatgcaaGagaaaataggcgtcatggaa	11	6	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120115857	C	C	120115857	1	2	114	0	1	0	0	0	0	0	0	0	6137	957	33	4		4	FSTL1	3	120115857	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	6418162	120115857	77906573	94	108270											
CPNE4	131034	broad.mit.edu	37	chr3	131261579	131261579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcatggacaatggcctccCgggtgtcggccatgtctgtg	15	11	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131261579	T	T	131261579	3	4	114	1	0	0	0	0	1	0	0	0	3846	652	23	4	320	4	CPNE4	3	131261579	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	11145722	131261579	66760851	95	108271											
AGTR1	185	broad.mit.edu	37	chr3	148458798	148458798	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatttgatatagtgtttgcAacaaattcgacccaggtgat	9	6	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148458798	T	T	148458798	1	4	114	0	1	0	0	0	0	0	0	0	401	145	5	5		5	AGTR1	3	148458798	5'UTR	SNP	A	TCGA-44-3396-01A-01D-1265-08	17197219	148458798	49563632	96	108272											
MED12L	116931	broad.mit.edu	37	chr3	150883660	150883660	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattagtcgggttttgcacaCgttggaagttttggatcgtc	12	6	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150883660	T	T	150883660	3	4	114	1	0	0	0	0	1	0	0	0	9522	536	19	4	1423	4	MED12L	3	150883660	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	2424862	150883660	47138770	97	108273											
MED12L	116931	broad.mit.edu	37	chr3	150903267	150903267	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtaggttccattttctttCtgcttgttgaatgccgtaat	9	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150903267	A	A	150903267	1	1	114	0	1	0	0	0	0	0	0	0	9522	928	32	3		3	MED12L	3	150903267	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	19607	150903267	47119163	98	108274											
SI	6476	broad.mit.edu	37	chr3	164725726	164725726	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataaggtggataatttagttCgtcatttctgcattgattag	9	4	2	1	rs145734588	byFrequency	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164725726	T	T	164725726	3	4	114	1	0	0	0	0	1	0	0	0	14410	893	31	4	1295	4	SI	3	164725726	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	13822459	164725726	33296704	99	108275											
FXR1	8087	broad.mit.edu	37	chr3	180680630	180680630	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctttaggaaaacaaaaagTtatatataagaagacttact	7	4	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180680630	A	A	180680630	1	1	114	0	1	0	0	0	0	0	0	0	6175	1740	60	5		5	FXR1	3	180680630	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	15954904	180680630	17341800	100	108276											
KLHL24	54800	broad.mit.edu	37	chr3	183382556	183382556	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaactatttccattaaatttCaagaggtctttatttattga	5	5	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183382556	T	T	183382556	1	4	114	0	1	0	0	0	0	0	0	0	8450	841	29	4		4	KLHL24	3	183382556	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2701926	183382556	14639874	101	108277											
MAP3K13	9175	broad.mit.edu	37	chr3	185167766	185167766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcttcagccattatctgGggtgttggaagcaacagcct	11	9	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185167766	T	T	185167766	3	4	114	1	0	0	0	0	1	0	0	0	9339	1241	43	2	1107	2	MAP3K13	3	185167766	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1785210	185167766	12854664	102	108278											
LPP	4026	broad.mit.edu	37	chr3	188426068	188426068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcagggtggccattcagGgcaactggggccttcgtcag	14	11	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188426068	T	T	188426068	3	4	114	1	0	0	0	0	1	0	0	0	9010	1232	43	2	1145	2	LPP	3	188426068	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	3258302	188426068	9596362	103	108279											
JAKMIP1	152789	broad.mit.edu	37	chr4	6055780	6055780	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagatagagtctcttacttcGagttctagcactctgaattc	7	10	3	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6055780	C	C	6055780	2	2	114	1	0	0	0	0	0	0	0	1	8010	1045	37	4		4	JAKMIP1	4	6055780	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08		6055780	185098496	104	108280											
TADA2B	93624	broad.mit.edu	37	chr4	7056332	7056332	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatgtcatgcaaggagtttGatgacctttttgaaaacatg	9	6	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7056332	C	C	7056332	3	2	114	1	0	0	0	0	1	0	0	0	15630	1290	45	4	820	4	TADA2B	4	7056332	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1000552	7056332	184097944	105	108281											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69100155	69100155	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaaaaaacctatgtaataGaaaataatggaaataagtca	6	4	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69100155	C	C	69100155	1	2	114	0	1	0	0	0	0	0	0	0	16363	957	33	4		4	TMPRSS11B	4	69100155	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	62043823	69100155	122054121	106	108282											
UGT2B10	7365	broad.mit.edu	37	chr4	69682206	69682206	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcttatttaccctgtggtGagctgctggctgagctattt	11	8	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69682206	T	T	69682206	4	4	114	1	0	0	0	0	0	1	0	0	17082	1291	45	3	471	3	UGT2B10	4	69682206	Nonsense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	582051	69682206	121472070	107	108283											
ANKRD17	26057	broad.mit.edu	37	chr4	73957758	73957758	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggttcttaatggttttgtGagtggatgcagaagaaattg	14	2	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73957758	A	A	73957758	3	1	114	1	0	0	0	0	1	0	0	0	646	1290	45	4	2248	4	ANKRD17	4	73957758	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	4275552	73957758	117196518	108	108284											
COPS4	51138	broad.mit.edu	37	chr4	83984321	83984321	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctagagaaaatgtatctaGataggatcatcagaggaaat	9	5	3	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83984321	C	C	83984321	3	2	114	1	0	0	0	0	1	0	0	0	3767	942	33	4	834	4	COPS4	4	83984321	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	10026563	83984321	107169955	109	108285											
TIGD2	166815	broad.mit.edu	37	chr4	90034222	90034222	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctttcaaaaaactttccGtggtgtacggaattggtgaa	9	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90034222	A	A	90034222	3	1	114	1	0	0	0	0	1	0	0	0	16019	1145	40	4	99	4	TIGD2	4	90034222	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	6049901	90034222	101120054	110	108286											
LEF1	51176	broad.mit.edu	37	chr4	109088908	109088908	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgccgccgccacctcctcCggagagttggggcatcccgg	13	19	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109088908	T	T	109088908	3	4	114	1	0	0	0	0	1	0	0	0	8786	661	23	4	1324	4	LEF1	4	109088908	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	19054686	109088908	82065368	111	108287											
SPATA5	166378	broad.mit.edu	37	chr4	124235149	124235149	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccttgagcactgtgacacCtagaattcctgagtcattga	10	10	1	5			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124235149	G	G	124235149	3	3	114	1	0	0	0	0	1	0	0	0	15127	681	24	4	2674	4	SPATA5	4	124235149	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	15146241	124235149	66919127	112	108288											
FHDC1	85462	broad.mit.edu	37	chr4	153874673	153874673	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactattttggatgcaaaacGgagcatgaacattgggatat	10	5	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153874673	A	A	153874673	3	1	114	1	0	0	0	0	1	0	0	0	5933	1116	39	4	527	4	FHDC1	4	153874673	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	29639524	153874673	37279603	113	108289											
KIAA0922	23240	broad.mit.edu	37	chr4	154512349	154512349	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccttaggagcaggatggtGaggacagtgtgtcttttcat	14	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154512349	T	T	154512349	1	4	114	0	1	0	0	0	0	0	0	0	8271	1305	45	3		3	KIAA0922	4	154512349	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	637676	154512349	36641927	114	108290											
RNASEN	29102	broad.mit.edu	37	chr5	31515172	31515172	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaggcttaagaagttcttCttcttcctcctcattcttgt	5	12	5	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31515172	T	T	31515172	3	4	114	1	0	0	0	0	1	0	0	0	13528	922	32	4	3027	4	RNASEN	5	31515172	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08		31515172	149400088	115	108291											
NPR3	4883	broad.mit.edu	37	chr5	32724939	32724939	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttcctatggtaactctgcttCcactttcccctcctctgcta	4	16	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32724939	G	G	32724939	1	3	114	0	1	0	0	0	0	0	0	0	10691	870	30	4		4	NPR3	5	32724939	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1209767	32724939	148190321	116	108292											
NIPBL	25836	broad.mit.edu	37	chr5	36985803	36985803	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggggatcagtctagggttCgaagaccagaaacattgaga	14	6	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36985803	T	T	36985803	4	4	114	1	0	0	0	0	0	1	0	0	10523	876	31	4	2555	4	NIPBL	5	36985803	Nonsense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4260864	36985803	143929457	117	108293											
ARL15	54622	broad.mit.edu	37	chr5	53467697	53467697	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaacctgtgaggcctatgCaaaccaggtcatattctggt	10	10	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53467697	G	G	53467697	3	3	114	1	0	0	0	0	1	0	0	0	933	710	25	4	520	4	ARL15	5	53467697	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	16481894	53467697	127447563	118	108294											
RNF180	285671	broad.mit.edu	37	chr5	63509899	63509899	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccactttatatgaaatacAtagtaagactactgcctatt	4	9	0	2	rs142108516		TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63509899	T	T	63509899	3	4	114	1	0	0	0	0	1	0	0	0	13575	217	8	5	756	5	RNF180	5	63509899	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	10042202	63509899	117405361	119	108295											
C5orf44	80006	broad.mit.edu	37	chr5	64956651	64956651	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taagggagtaacagtaattgGaaaattggatatagtatgga	12	1	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64956651	C	C	64956651	3	2	114	1	0	0	0	0	1	0	0	0	2326	1174	41	4	862	4	C5orf44	5	64956651	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1446752	64956651	115958609	120	108296											
RGNEF	64283	broad.mit.edu	37	chr5	73048996	73048996	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctggaattgcctctagaGtggactgtgttgggaagttc	13	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73048996	A	A	73048996	2	1	114	1	0	0	0	0	0	0	0	1	13391	1020	36	4		4	RGNEF	5	73048996	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	8092345	73048996	107866264	121	108297											
CHD1	1105	broad.mit.edu	37	chr5	98204345	98204345	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttggattcactcaactaaaGaaaaagtgaaaagaaaacaa	6	6	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98204345	C	C	98204345	1	2	114	0	1	0	0	0	0	0	0	0	3354	957	33	4		4	CHD1	5	98204345	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	25155349	98204345	82710915	122	108298											
CHD1	1105	broad.mit.edu	37	chr5	98204358	98204358	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aactaaagaaaaagtgaaaaGaaaacaaaaacaaaacccca	4	7	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98204358	C	C	98204358	1	2	114	0	1	0	0	0	0	0	0	0	3354	957	33	4		4	CHD1	5	98204358	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	13	98204358	82710902	123	108299											
ACSL6	23305	broad.mit.edu	37	chr5	131322423	131322423	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggagttgcttattaacacaGaggtgctgttctgtgcacag	12	7	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131322423	A	A	131322423	1	1	114	0	1	0	0	0	0	0	0	0	181	957	33	4		4	ACSL6	5	131322423	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	33118065	131322423	49592837	124	108300											
SPOCK1	6695	broad.mit.edu	37	chr5	136328349	136328349	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgccttctgtgtgcaGggctactggcaaagccacgt	11	12	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136328349	A	A	136328349	1	1	114	0	1	0	0	0	0	0	0	0	15197	1015	35	4		4	SPOCK1	5	136328349	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	5005926	136328349	44586911	125	108301											
KLHL3	26249	broad.mit.edu	37	chr5	137034113	137034113	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcacctagagtttacaacaAaaacaaaatgacataaatgt	5	7	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137034113	G	G	137034113	1	3	114	0	1	0	0	0	0	0	0	0	8454	29	1	5		5	KLHL3	5	137034113	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	705764	137034113	43881147	126	108302											
PCDHB11	56125	broad.mit.edu	37	chr5	140580730	140580730	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctacaccctgttcgtccgCgagaacaacagccccgccct	7	19	0	1	rs114264306	byFrequency;by1000genomes	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140580730	T	T	140580730	2	4	114	1	0	0	0	0	0	0	0	1	11630	755	27	4		4	PCDHB11	5	140580730	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	3546617	140580730	40334530	127	108303											
PCDHGC4	56098	broad.mit.edu	37	chr5	140865098	140865098	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttggaaatgtaccgagcaGaggtagagatcgtagatgtg	14	5	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140865098	C	C	140865098	3	2	114	1	0	0	0	0	1	0	0	0	11664	943	33	4	360	4	PCDHGC4	5	140865098	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	284368	140865098	40050162	128	108304											
DIAPH1	1729	broad.mit.edu	37	chr5	140954416	140954416	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttaaaatatgcaccatgTaactagattacctattagta	4	6	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140954416	A	A	140954416	1	1	114	0	1	0	0	0	0	0	0	0	4558	1653	57	5		5	DIAPH1	5	140954416	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	89318	140954416	39960844	129	108305											
GRIA1	2890	broad.mit.edu	37	chr5	153029841	153029841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgggagtgggtggtgccCacaaatcctgactgtctgtc	14	9	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153029841	A	A	153029841	1	1	114	0	1	0	0	0	0	0	0	0	6833	609	21	2		2	GRIA1	5	153029841	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	12075425	153029841	27885419	130	108306											
ZNF354C	30832	broad.mit.edu	37	chr5	178506452	178506452	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagaaggccttcaactgtaGagcaaaacttcacaggcatc	9	10	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178506452	A	A	178506452	3	1	114	1	0	0	0	0	1	0	0	0	17992	942	33	4	1033	4	ZNF354C	5	178506452	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	25476611	178506452	2408808	131	108307											
ADAMTS2	9509	broad.mit.edu	37	chr5	178581848	178581848	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgggccaccacaaacgctGaggagaagccgtcctcatgg	12	13	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178581848	A	A	178581848	3	1	114	1	0	0	0	0	1	0	0	0	265	1294	45	4	2569	4	ADAMTS2	5	178581848	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	75396	178581848	2333412	132	108308											
MBOAT1	154141	broad.mit.edu	37	chr6	20102373	20102377	+	3'UTR	DEL	AAAAT	-	-													aaaaaaaaaaaaaaaaaaaaAaaatactccctgcactttaa							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20102377	-	-	20102373	6	5	114	0	1	1	0	1	0	0	0	0	9449	29	1	0		0	MBOAT1	6	20102373	3'UTR	DEL	AAAAT	TCGA-44-3396-01A-01D-1265-08		20102373	151012694	133	108309											
FAM65B	9750	broad.mit.edu	37	chr6	24843425	24843425	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attctcaaggaacaggtgctCagccccagcacctgaggact	10	13	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24843425	G	G	24843425	3	3	114	1	0	0	0	0	1	0	0	0	5651	835	29	4	1671	4	FAM65B	6	24843425	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4741052	24843425	146271642	134	108310											
BAT3	7917	broad.mit.edu	37	chr6	31611664	31611664	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtggggaagaatgaaaactCacccacaaggactggctgca	12	9	1	2	rs112300985		TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31611664	T	T	31611664	1	4	114	0	1	0	0	0	0	0	0	0	1327	841	29	4		4	BAT3	6	31611664	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	6768239	31611664	139503403	135	108311											
DAAM2	23500	broad.mit.edu	37	chr6	39835326	39835326	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctggagggcttgacctgtCtgctaaatttcctccggagc	12	11	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39835326	G	G	39835326	3	3	114	1	0	0	0	0	1	0	0	0	4249	912	32	4	487	4	DAAM2	6	39835326	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	8223662	39835326	131279741	136	108312											
C6orf138	442213	broad.mit.edu	37	chr6	47976380	47976380	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatagttacccatggcgaaGaacgggattcccagcagggt	14	9	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47976380	T	T	47976380	3	4	114	1	0	0	0	0	1	0	0	0	2355	933	33	3	1651	3	C6orf138	6	47976380	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	8141054	47976380	123138687	137	108313											
GCM1	8521	broad.mit.edu	37	chr6	53010219	53010219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaaaatccctcagtcgGctgtctagctgaaactctag	7	11	4	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53010219	A	A	53010219	1	1	114	0	1	0	0	0	0	0	0	0	6359	1218	42	4		4	GCM1	6	53010219	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	5033839	53010219	118104848	138	108314											
DST	667	broad.mit.edu	37	chr6	56371470	56371470	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaagccagttgtacctcatCtatactcttcttgacaatgg	7	10	4	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56371470	G	G	56371470	3	3	114	1	0	0	0	0	1	0	0	0	4823	913	32	4	4139	4	DST	6	56371470	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	3361251	56371470	114743597	139	108315											
BAI3	577	broad.mit.edu	37	chr6	70070756	70070756	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaactttacattcctactCacagttcttcataaggatat	3	10	4	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70070756	T	T	70070756	1	4	114	0	1	0	0	0	0	0	0	0	1305	841	29	4		4	BAI3	6	70070756	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	13699286	70070756	101044311	140	108316											
ELOVL4	6785	broad.mit.edu	37	chr6	80629227	80629227	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatagtatgagtacataatCacatggataaaggaattcaa	7	6	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80629227	T	T	80629227	2	4	114	1	0	0	0	0	0	0	0	1	5118	813	29	4		4	ELOVL4	6	80629227	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	10558471	80629227	90485840	141	108317											
SPACA1	81833	broad.mit.edu	37	chr6	88773997	88773997	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcctcttcttccccctcctCatccagtgaattgcaaagcc	4	17	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88773997	A	A	88773997	1	1	114	0	1	0	0	0	0	0	0	0	15086	841	29	3		3	SPACA1	6	88773997	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	8144770	88773997	82341070	142	108318											
CNR1	1268	broad.mit.edu	37	chr6	88854698	88854698	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtccatgaagttctccCcacactggatgttctcctca	6	14	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88854698	G	G	88854698	3	3	114	1	0	0	0	0	1	0	0	0	3663	623	22	4	1126	4	CNR1	6	88854698	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	80701	88854698	82260369	143	108319											
PM20D2	135293	broad.mit.edu	37	chr6	89868264	89868264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttgtatttaatggtttgGgaggtcgggaggtactactg	16	3	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89868264	T	T	89868264	1	4	114	0	1	0	0	0	0	0	0	0	12224	1247	43	2		2	PM20D2	6	89868264	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1013566	89868264	81246803	144	108320											
SIM1	6492	broad.mit.edu	37	chr6	100838105	100838105	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttgattttataggaAcacgtatcaaatacccagta	5	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100838105	G	G	100838105	1	3	114	0	1	0	0	0	0	0	0	0	14436	58	2	5		5	SIM1	6	100838105	3'UTR	SNP	A	TCGA-44-3396-01A-01D-1265-08	10969841	100838105	70276962	145	108321											
ASCC3	10973	broad.mit.edu	37	chr6	100957385	100957385	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggccaaggtagcagtcactCatgaaatataatgtgtagat	10	6	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100957385	G	G	100957385	3	3	114	1	0	0	0	0	1	0	0	0	1037	826	29	4	126	4	ASCC3	6	100957385	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	119280	100957385	70157682	146	108322											
ASCC3	10973	broad.mit.edu	37	chr6	100957991	100957991	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctggctttccctgtaaaCcagaaaaaaagatacaacat	5	10	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100957991	T	T	100957991	1	4	114	0	1	0	0	0	0	0	0	0	1037	522	18	4		4	ASCC3	6	100957991	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	606	100957991	70157076	147	108323											
MAN1A1	4121	broad.mit.edu	37	chr6	119522515	119522515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcgaatattcattacctAtaatagaaaataaaatgtta	4	4	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119522515	G	G	119522515	1	3	114	0	1	0	0	0	0	0	0	0	9302	464	16	5		5	MAN1A1	6	119522515	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	18564524	119522515	51592552	148	108324											
C6orf170	221322	broad.mit.edu	37	chr6	121624836	121624836	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggatccaaaatcttttgtGagacaacatggctttgatta	8	7	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121624836	A	A	121624836	3	1	114	1	0	0	0	0	1	0	0	0	2367	1294	45	4	2862	4	C6orf170	6	121624836	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	2102321	121624836	49490231	149	108325											
NKAIN2	154215	broad.mit.edu	37	chr6	124604098	124604098	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatccttttttcctctcaCcactgtgctgtttctcacat	3	13	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124604098	T	T	124604098	1	4	114	0	1	0	0	0	0	0	0	0	10531	522	18	4		4	NKAIN2	6	124604098	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2979262	124604098	46510969	150	108326											
HIVEP2	3097	broad.mit.edu	37	chr6	143095798	143095798	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagctgattgttcctgtctCcatctacctgatgctttatc	6	12	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143095798	G	G	143095798	3	3	114	1	0	0	0	0	1	0	0	0	7254	856	30	4	7286	4	HIVEP2	6	143095798	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	18491700	143095798	28019269	151	108327											
RBM16	22828	broad.mit.edu	37	chr6	155129369	155129369	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttctgggtcataaatttCtaaaagtagctaaagaaatc	6	5	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155129369	G	G	155129369	1	3	114	0	1	0	0	0	0	0	0	0	13226	928	32	4		4	RBM16	6	155129369	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	12033571	155129369	15985698	152	108328											
MAP3K4	4216	broad.mit.edu	37	chr6	161470184	161470184	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgtcaagccatcccagatAttattaatgaaatccttact	4	12	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161470184	T	T	161470184	3	4	114	1	0	0	0	0	1	0	0	0	9344	449	16	5	890	5	MAP3K4	6	161470184	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	6340815	161470184	9644883	153	108329											
SNX13	23161	broad.mit.edu	37	chr7	17931279	17931279	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttaaaggaaatcaaaatatCttactgagtagttttctgat	6	5	3	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17931279	G	G	17931279	1	3	114	0	1	0	0	0	0	0	0	0	14998	928	32	4		4	SNX13	7	17931279	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08		17931279	141207384	154	108330											
TRA2A	29896	broad.mit.edu	37	chr7	23556279	23556279	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttctgaggaaagggtattCttcctttggttcacttaagt	10	7	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23556279	T	T	23556279	1	4	114	0	1	0	0	0	0	0	0	0	16557	928	32	4		4	TRA2A	7	23556279	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	5625000	23556279	135582384	155	108331											
HOXA6	3203	broad.mit.edu	37	chr7	27187160	27187160	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccccgtactcgtaggacGcccggttgcaggccaggacc	14	15	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27187160	T	T	27187160	3	4	114	1	0	0	0	0	1	0	0	0	7363	1087	38	3	500	3	HOXA6	7	27187160	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	3630881	27187160	131951503	156	108332											
C7orf10	79783	broad.mit.edu	37	chr7	40723661	40723661	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggttgtcaatagaacgctGtctctggcttccaaagcctg	10	11	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40723661	C	C	40723661	1	2	114	0	1	0	0	0	0	0	0	0	2401	1377	48	4		4	C7orf10	7	40723661	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	13536501	40723661	118415002	157	108333											
INHBA	3624	broad.mit.edu	37	chr7	41729294	41729294	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgttctgaatgtcctttTtgatgatgttttgaccatca	7	7	3	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41729294	C	C	41729294	3	2	114	1	0	0	0	0	1	0	0	0	7811	1841	64	5	49	5	INHBA	7	41729294	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	1005633	41729294	117409369	158	108334											
VWC2	375567	broad.mit.edu	37	chr7	49842429	49842430	+	Frame_Shift_Ins	INS	-	A	A													atcagtgctgtcccatctgcINSaaaaatggtatgtgagatcc							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49842430	A	A	49842429	7	5	114	1	0	1	1	0	0	0	0	0	17370	718	25	0	825	0	VWC2	7	49842429	Frame_Shift_Ins	INS	-	TCGA-44-3396-01A-01D-1265-08	8113135	49842429	109296234	159	108335											
SEMA3A	10371	broad.mit.edu	37	chr7	83640502	83640502	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacactagcttcttacgcaGttcatcaaaatgagtgtcaa	6	9	4	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83640502	A	A	83640502	2	1	114	1	0	0	0	0	0	0	0	1	14137	1020	36	4		4	SEMA3A	7	83640502	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	33798073	83640502	75498161	160	108336											
DBF4	10926	broad.mit.edu	37	chr7	87537236	87537236	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatctggaaccaaatgctGaatttgataaaagaactgaa	7	5	1	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87537236	A	A	87537236	3	1	114	1	0	0	0	0	1	0	0	0	4281	1291	45	4	1829	4	DBF4	7	87537236	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	3896734	87537236	71601427	161	108337											
AKAP9	10142	broad.mit.edu	37	chr7	91660865	91660865	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagaggaaacaaatatcGttaagttgcttgaaaaacaa	8	4	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91660865	A	A	91660865	3	1	114	1	0	0	0	0	1	0	0	0	459	1145	40	4	4347	4	AKAP9	7	91660865	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	4123629	91660865	67477798	162	108338											
AKAP9	10142	broad.mit.edu	37	chr7	91700233	91700233	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaggtagaggaccgaaaAcactttggagctgtagaagc	12	6	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91700233	G	G	91700233	2	3	114	1	0	0	0	0	0	0	0	1	459	40	2	5		5	AKAP9	7	91700233	Silent	SNP	A	TCGA-44-3396-01A-01D-1265-08	39368	91700233	67438430	163	108339											
RELN	5649	broad.mit.edu	37	chr7	103557405	103557405	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacacaaaaacaaaacacttCagattattttcttggaagta	4	8	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103557405	G	G	103557405	1	3	114	0	1	0	0	0	0	0	0	0	13328	841	29	4		4	RELN	7	103557405	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	11857172	103557405	55581258	164	108340											
MET	4233	broad.mit.edu	37	chr7	116417342	116417342	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtactcttttgctgtataGaaagaagaaagaataaaatg	8	3	1	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116417342	C	C	116417342	1	2	114	0	1	0	0	0	0	0	0	0	9578	957	33	4		4	MET	7	116417342	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	12859937	116417342	42721321	165	108341											
ANKRD7	56311	broad.mit.edu	37	chr7	117876197	117876197	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaatgcttcagataattatCaaaggtataattaataaata	5	3	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117876197	G	G	117876197	3	3	114	1	0	0	0	0	1	0	0	0	686	827	29	4	585	4	ANKRD7	7	117876197	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	1458855	117876197	41262466	166	108342											
LRRC4	64101	broad.mit.edu	37	chr7	127670635	127670635	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccgtgaggtagacgaacGggagcaggatggcattccag	17	9	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127670635	A	A	127670635	3	1	114	1	0	0	0	0	1	0	0	0	9084	1116	39	4	1906	4	LRRC4	7	127670635	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	9794438	127670635	31468028	167	108343											
AHCYL2	23382	broad.mit.edu	37	chr7	129008532	129008532	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttattactctacgttctGattagttcctaggtactagg	8	8	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129008532	C	C	129008532	1	2	114	0	1	0	0	0	0	0	0	0	411	1305	45	4		4	AHCYL2	7	129008532	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1337897	129008532	30130131	168	108344											
CPA4	51200	broad.mit.edu	37	chr7	129945750	129945750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggccactgcaatctggaCggcaaggaaggtcatgctgc	13	12	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129945750	A	A	129945750	3	1	114	1	0	0	0	0	1	0	0	0	3824	536	19	3	603	3	CPA4	7	129945750	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	937218	129945750	29192913	169	108345											
MKLN1	4289	broad.mit.edu	37	chr7	131113969	131113969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatgtgcacttgtttttcGgcatgattatattcttcact	7	7	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131113969	T	T	131113969	1	4	114	0	1	0	0	0	0	0	0	0	9696	1131	39	1		1	MKLN1	7	131113969	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1168219	131113969	28024694	170	108346											
TAS2R40	259286	broad.mit.edu	37	chr7	142919080	142919080	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaataaccattaatgagggCggcagaaattataacattga	9	5	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142919080	A	A	142919080	1	1	114	0	1	0	0	0	0	0	0	0	15697	783	27	3		3	TAS2R40	7	142919080	5'Flank	SNP	C	TCGA-44-3396-01A-01D-1265-08	11805111	142919080	16219583	171	108347											
MLL3	58508	broad.mit.edu	37	chr7	151884816	151884816	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacctggcatcaggataagAggattgtgcaattgcagaga	13	6	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151884816	C	C	151884816	3	2	114	1	0	0	0	0	1	0	0	0	9715	304	11	5	10070	5	MLL3	7	151884816	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	8965736	151884816	7253847	172	108348											
CSMD1	64478	broad.mit.edu	37	chr8	2813306	2813306	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgagctgaaacaacattagGaaacattgagactttgttta	8	5	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2813306	A	A	2813306	1	1	114	0	1	0	0	0	0	0	0	0	3978	1189	41	4		4	CSMD1	8	2813306	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08		2813306	143550716	173	108349											
C8orf41	80185	broad.mit.edu	37	chr8	33367455	33367455	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcttccaggattccctaaGtgaatacatagaattacatt	5	8	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33367455	A	A	33367455	1	1	114	0	1	0	0	0	0	0	0	0	2453	1044	36	4		4	C8orf41	8	33367455	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	30554149	33367455	112996567	174	108350											
CA13	377677	broad.mit.edu	37	chr8	86158167	86158167	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagcgcgacgccccggcgctCgctgaccacacactgggctc	12	18	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86158167	T	T	86158167	1	4	114	0	1	0	0	0	0	0	0	0	2540	899	31	4		4	CA13	8	86158167	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	52790712	86158167	60205855	175	108351											
CNGB3	54714	broad.mit.edu	37	chr8	87623926	87623926	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaaaataattcttaTagaaacaactaaaggccaat	4	5	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87623926	C	C	87623926	1	2	114	0	1	0	0	0	0	0	0	0	3633	1421	49	5		5	CNGB3	8	87623926	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	1465759	87623926	58740096	176	108352											
KIAA1429	25962	broad.mit.edu	37	chr8	95508682	95508682	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagctccctctacttccatGagaccattatcatctccaca	4	15	3	2	rs139309146		TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95508682	A	A	95508682	2	1	114	1	0	0	0	0	0	0	0	1	8301	1277	45	4		4	KIAA1429	8	95508682	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	7884756	95508682	50855340	177	108353											
RPL30	6156	broad.mit.edu	37	chr8	99054903	99054904	+	Frame_Shift_Del	DEL	TG	-	-													gatagccagtgtgcacactcTgtagtattttccgcatgctg							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99054904	-	-	99054903	7	5	114	1	0	1	0	1	0	0	0	0	13691	1588	55	0	87	0	RPL30	8	99054903	Frame_Shift_Del	DEL	TG	TCGA-44-3396-01A-01D-1265-08	3546221	99054903	47309119	178	108354											
RGS22	26166	broad.mit.edu	37	chr8	100990155	100990155	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgtctcacctttccagatTtttcgtcttctaggactgcc	6	13	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100990155	G	G	100990155	3	3	114	1	0	0	0	0	1	0	0	0	13414	1841	64	5	305	5	RGS22	8	100990155	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	1935252	100990155	45373867	179	108355											
GRHL2	79977	broad.mit.edu	37	chr8	102661776	102661776	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaacctgctgtgttctctCtcctctggaatccatgtact	8	12	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102661776	G	G	102661776	1	3	114	0	1	0	0	0	0	0	0	0	6830	928	32	4		4	GRHL2	8	102661776	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1671621	102661776	43702246	180	108356											
FER1L6	654463	broad.mit.edu	37	chr8	125074159	125074159	+	Frame_Shift_Del	DEL	G	-	-													tggtggactggagagcttttGggaggagtacccttgtgggc							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125074159	-	-	125074159	7	5	114	1	0	1	0	1	0	0	0	0	5872	1348	47	0	3308	0	FER1L6	8	125074159	Frame_Shift_Del	DEL	G	TCGA-44-3396-01A-01D-1265-08	22412383	125074159	21289863	181	108357											
ADCY8	114	broad.mit.edu	37	chr8	131922164	131922164	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tataagaccagagtgggcatCgttggctctgcactttcttt	10	9	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131922164	T	T	131922164	1	4	114	0	1	0	0	0	0	0	0	0	300	899	31	4		4	ADCY8	8	131922164	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	6848005	131922164	14441858	182	108358											
FLJ43860	389690	broad.mit.edu	37	chr8	142505602	142505602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctaaggttggcaagaaggCatgtgtaagcaggctgtggg	18	5	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142505602	A	A	142505602	1	1	114	0	1	0	0	0	0	0	0	0	5987	725	25	3		3	FLJ43860	8	142505602	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	10583438	142505602	3858420	183	108359											
EEF1D	1936	broad.mit.edu	37	chr8	144661906	144661906	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggagccagagggccggtctCagtctttaatcgtggcaggg	16	10	2	1	rs139166610	by1000genomes	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144661906	T	T	144661906	1	4	114	0	1	0	0	0	0	0	0	0	4966	841	29	4		4	EEF1D	8	144661906	3'UTR	SNP	C	TCGA-44-3396-01A-01D-1265-08	2156304	144661906	1702116	184	108360											
MLANA	2315	broad.mit.edu	37	chr9	5892506	5892506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgctcacttcatctatgGttaccccaagaaggggcacg	10	11	3	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5892506	T	T	5892506	3	4	114	1	0	0	0	0	1	0	0	0	9704	1261	44	3	34	3	MLANA	9	5892506	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08		5892506	135320925	185	108361											
PTPRD	5789	broad.mit.edu	37	chr9	8518128	8518128	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attcgtgcctggacatccctCggggcactggatggtgcttg	14	11	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8518128	G	G	8518128	2	3	114	1	0	0	0	0	0	0	0	1	12907	871	31	4		4	PTPRD	9	8518128	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	2625622	8518128	132695303	186	108362											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18574179	18574179	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagccaaaggaacaacccTggttgttgaactagcaccta	8	12	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18574179	A	A	18574179	3	1	114	1	0	0	0	0	1	0	0	0	274	1580	55	5	403	5	ADAMTSL1	9	18574179	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	10056051	18574179	122639252	187	108363											
DNAI1	27019	broad.mit.edu	37	chr9	34514476	34514476	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtcctggaacccatacCacaccaaggtcttcatgtcc	7	15	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34514476	G	G	34514476	3	3	114	1	0	0	0	0	1	0	0	0	4649	594	21	4	1720	4	DNAI1	9	34514476	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	15940297	34514476	106698955	188	108364											
RG9MTD3	158234	broad.mit.edu	37	chr9	37770040	37770040	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtagttgaatgcatggattCgtatagcccattgttcctgt	10	7	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37770040	T	T	37770040	1	4	114	0	1	0	0	0	0	0	0	0	13381	899	31	4		4	RG9MTD3	9	37770040	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	3255564	37770040	103443391	189	108365											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112705636	112705636	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccccagaagggaaggaagaGagcctagctacagagccagc	13	11	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112705636	C	C	112705636	3	2	114	1	0	0	0	0	1	0	0	0	11504	933	33	4		4	PALM2-AKAP2	9	112705636	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	74935596	112705636	28507795	190	108366											
STXBP1	6812	broad.mit.edu	37	chr9	130427644	130427644	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaccacgtggttctctttaCcaaggaccgcagtgtttgtg	12	10	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130427644	G	G	130427644	1	3	114	0	1	0	0	0	0	0	0	0	15470	522	18	4		4	STXBP1	9	130427644	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	17722008	130427644	10785787	191	108367											
BAT2L1	84726	broad.mit.edu	37	chr9	134371229	134371229	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaaccggagcgatcaagcctCgggctgtcaaagtggaggag	16	9	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134371229	G	G	134371229	3	3	114	1	0	0	0	0	1	0	0	0	1325	875	31	4	6780	4	BAT2L1	9	134371229	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	3943585	134371229	6842202	192	108368											
AKR1C3	8644	broad.mit.edu	37	chr10	5138691	5138691	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcatttatacaataatgaGgagcaggttggactggccat	11	7	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5138691	C	C	5138691	1	2	114	0	1	0	0	0	0	0	0	0	471	991	35	4		4	AKR1C3	10	5138691	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08		5138691	130396056	193	108369											
NET1	10276	broad.mit.edu	37	chr10	5494953	5494953	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacaaaatctaaaggatagTtttcttaacctttagaagta	5	6	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5494953	C	C	5494953	1	2	114	0	1	0	0	0	0	0	0	0	10433	1740	60	5		5	NET1	10	5494953	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	356262	5494953	130039794	194	108370											
SFMBT2	57713	broad.mit.edu	37	chr10	7212852	7212852	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatttcagatgcagagtctCagcacatcaaacaatcgaca	6	11	4	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7212852	G	G	7212852	1	3	114	0	1	0	0	0	0	0	0	0	14271	841	29	4		4	SFMBT2	10	7212852	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1717899	7212852	128321895	195	108371											
ITIH5	80760	broad.mit.edu	37	chr10	7614359	7614359	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcttcccttctgaagccacGaactgaaaaaaatgaaaaca	5	10	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7614359	T	T	7614359	1	4	114	0	1	0	0	0	0	0	0	0	7977	1058	37	3		3	ITIH5	10	7614359	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	401507	7614359	127920388	196	108372											
CUBN	8029	broad.mit.edu	37	chr10	16996511	16996511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccttccacacgtcctggCaaggcgggacattgtggagc	12	14	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16996511	A	A	16996511	3	1	114	1	0	0	0	0	1	0	0	0	4084	710	25	3	6283	3	CUBN	10	16996511	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	9382152	16996511	118538236	197	108373											
STAM	8027	broad.mit.edu	37	chr10	17738948	17738948	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagtaaactgaactttttaGagcagtgttgcccaggctgg	12	7	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17738948	C	C	17738948	1	2	114	0	1	0	0	0	0	0	0	0	15366	957	33	4		4	STAM	10	17738948	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	742437	17738948	117795799	198	108374											
CACNB2	783	broad.mit.edu	37	chr10	18828084	18828084	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttaaaaaggactctgcttGaatgcacttgctctgggaca	10	9	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18828084	C	C	18828084	1	2	114	0	1	0	0	0	0	0	0	0	2579	1305	45	4		4	CACNB2	10	18828084	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1089136	18828084	116706663	199	108375											
PCDH15	65217	broad.mit.edu	37	chr10	55912864	55912864	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaatataaattaccttcGctctgcaggaggagcattat	7	8	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55912864	T	T	55912864	2	4	114	1	0	0	0	0	0	0	0	1	11605	1095	38	3		3	PCDH15	10	55912864	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	37084780	55912864	79621883	200	108376											
MYPN	84665	broad.mit.edu	37	chr10	69881674	69881674	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgccgacttcattgaagAgctatcctcccttttcaaat	7	12	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69881674	C	C	69881674	3	2	114	1	0	0	0	0	1	0	0	0	10192	304	11	5	481	5	MYPN	10	69881674	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	13968810	69881674	65653073	201	108377											
PDCD11	22984	broad.mit.edu	37	chr10	105201505	105201505	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttggtaggagtccatgctCctccaggtgggctggcacgg	16	11	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105201505	T	T	105201505	1	4	114	0	1	0	0	0	0	0	0	0	11711	870	30	4		4	PDCD11	10	105201505	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	35319831	105201505	30333242	202	108378											
C10orf93	255352	broad.mit.edu	37	chr10	134755107	134755107	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctcaccaggttttctgcCgacttcggggcacacatctg	9	15	3	0	rs143120032		TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134755107	T	T	134755107	2	4	114	1	0	0	0	0	0	0	0	1	1636	639	23	4		4	C10orf93	10	134755107	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	29553602	134755107	779640	203	108379											
SIRT3	23410	broad.mit.edu	37	chr11	216895	216895	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatcccagcaggcctgggcaGaacagggtggctaaatggag	16	9	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216895	T	T	216895	1	4	114	0	1	0	0	0	0	0	0	0	14452	957	33	3		3	SIRT3	11	216895	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08		216895	134789621	204	108380											
CHID1	66005	broad.mit.edu	37	chr11	883320	883320	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcctgcagggcaaggggtGagcgagtttcagcaacaggg	18	8	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	883320	A	A	883320	1	1	114	0	1	0	0	0	0	0	0	0	3376	1305	45	4		4	CHID1	11	883320	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	666425	883320	134123196	205	108381											
TNNT3	7140	broad.mit.edu	37	chr11	1947513	1947513	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatgctgagagcagggttTggggacatgggactggggcg	20	6	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1947513	C	C	1947513	1	2	114	0	1	0	0	0	0	0	0	0	16455	1827	63	5		5	TNNT3	11	1947513	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	1064193	1947513	133059003	206	108382											
RRM1	6240	broad.mit.edu	37	chr11	4142838	4142838	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttatttaccactagcgtcCtggggcatttgctatttacc	7	10	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4142838	T	T	4142838	3	4	114	1	0	0	0	0	1	0	0	0	13792	681	24	4	919	4	RRM1	11	4142838	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	2195325	4142838	130863678	207	108383											
TPP1	1200	broad.mit.edu	37	chr11	6636182	6636182	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactaaggatcctgtgctcaTtgatcaaggataggatcccc	9	11	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6636182	C	C	6636182	3	2	114	1	0	0	0	0	1	0	0	0	16535	1493	52	5	233	5	TPP1	11	6636182	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	2493344	6636182	128370334	208	108384											
NLRP14	338323	broad.mit.edu	37	chr11	7079078	7079078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgttatctagagagactgtCgtgagtgtttctgttttgtt	12	4	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7079078	A	A	7079078	3	1	114	1	0	0	0	0	1	0	0	0	10571	898	31	3	2484	3	NLRP14	11	7079078	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	442896	7079078	127927438	209	108385											
EIF3F	8665	broad.mit.edu	37	chr11	8017361	8017361	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctacctttttgacttttattCagtctctcctagctgtcatt	4	11	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8017361	G	G	8017361	1	3	114	0	1	0	0	0	0	0	0	0	5058	841	29	4		4	EIF3F	11	8017361	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	938283	8017361	126989155	210	108386											
SOX6	55553	broad.mit.edu	37	chr11	16077504	16077504	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcagctgaaattgagtttCaaaagaaaaaacttaccata	6	6	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16077504	G	G	16077504	1	3	114	0	1	0	0	0	0	0	0	0	15069	841	29	4		4	SOX6	11	16077504	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	8060143	16077504	118929012	211	108387											
PEX16	9409	broad.mit.edu	37	chr11	45935329	45935329	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggagcaccagtgcccgctTgccagccctctccctggctc	10	20	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45935329	C	C	45935329	1	2	114	0	1	0	0	0	0	0	0	0	11838	1827	63	5		5	PEX16	11	45935329	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	29857825	45935329	89071187	212	108388											
OR4A5	81318	broad.mit.edu	37	chr11	51412143	51412143	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatagtctttttatcacAgaataagcctacaattaact	5	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51412143	T	T	51412143	3	4	114	1	0	0	0	0	1	0	0	0	11137	188	7	5	698	5	OR4A5	11	51412143	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	5476814	51412143	83594373	213	108389											
TRIM48	79097	broad.mit.edu	37	chr11	55038191	55038191	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaggagggactctttagtCttgggtgtgttaagaacgac	15	5	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55038191	A	A	55038191	1	1	114	0	1	0	0	0	0	0	0	0	16648	928	32	3		3	TRIM48	11	55038191	3'UTR	SNP	C	TCGA-44-3396-01A-01D-1265-08	3626048	55038191	79968325	214	108390											
OR5M8	219484	broad.mit.edu	37	chr11	56258676	56258676	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcaggaaaaagtacatGggcatgtggagccaggcgtt	15	7	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56258676	T	T	56258676	2	4	114	1	0	0	0	0	0	0	0	1	11270	1335	47	2		2	OR5M8	11	56258676	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	1220485	56258676	78747840	215	108391											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57089342	57089342	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccatggctgagctttccctGagagtagacactttcatcac	9	12	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57089342	A	A	57089342	2	1	114	1	0	0	0	0	0	0	0	1	16443	1277	45	4		4	TNKS1BP1	11	57089342	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	830666	57089342	77917174	216	108392											
OSBP	5007	broad.mit.edu	37	chr11	59361700	59361700	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcttcagtaaggcgctgaAgcatggacaagggctcatta	12	8	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59361700	C	C	59361700	3	2	114	1	0	0	0	0	1	0	0	0	11367	72	3	5	1111	5	OSBP	11	59361700	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	2272358	59361700	75644816	217	108393											
MRPL16	54948	broad.mit.edu	37	chr11	59575233	59575233	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtggaaggtccccgtatgtCacttaaatttttaggttctc	9	8	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59575233	T	T	59575233	3	4	114	1	0	0	0	0	1	0	0	0	9875	826	29	4	552	4	MRPL16	11	59575233	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	213533	59575233	75431283	218	108394											
TMEM151A	256472	broad.mit.edu	37	chr11	66062484	66062484	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgactatctggaggcgcGcgagggcatgcacctgaagg	17	10	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66062484	A	A	66062484	3	1	114	1	0	0	0	0	1	0	0	0	16193	1087	38	4	773	4	TMEM151A	11	66062484	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	6487251	66062484	68944032	219	108395											
FAT3	120114	broad.mit.edu	37	chr11	92533924	92533924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtggagggagaacaaCtttctgcactgtgagagtga	15	5	1	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92533924	G	G	92533924	3	3	114	1	0	0	0	0	1	0	0	0	5748	565	20	4	7779	4	FAT3	11	92533924	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	26471440	92533924	42472592	220	108396											
CWC15	51503	broad.mit.edu	37	chr11	94705238	94705238	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgtattttatctttgtatGagagggtaggtctctgcttg	11	6	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94705238	C	C	94705238	3	2	114	1	0	0	0	0	1	0	0	0	4100	1290	45	4	600	4	CWC15	11	94705238	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	2171314	94705238	40301278	221	108397											
PUS3	83480	broad.mit.edu	37	chr11	125765210	125765210	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggccaatcagaaagaggaTagccatcatacatcggactt	9	9	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125765210	C	C	125765210	3	2	114	1	0	0	0	0	1	0	0	0	12940	1406	49	5	600	5	PUS3	11	125765210	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	31059972	125765210	9241306	222	108398											
PLBD1	79887	broad.mit.edu	37	chr12	14689793	14689793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcactttgggaggccaacgCgggtggatctcccgaggtga	16	10	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14689793	T	T	14689793	1	4	114	0	1	0	0	0	0	0	0	0	12120	783	27	4		4	PLBD1	12	14689793	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08		14689793	119162102	223	108399											
IPO8	10526	broad.mit.edu	37	chr12	30789838	30789838	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatctgtttaatgtctccAtatagactagtattcatata	4	6	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30789838	T	T	30789838	1	4	114	0	1	0	0	0	0	0	0	0	7868	232	8	5		5	IPO8	12	30789838	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	16100045	30789838	103062057	224	108400											
KIF21A	55605	broad.mit.edu	37	chr12	39761014	39761014	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacttgaacaataaacaagaTactatacaatccaaagtctg	4	8	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39761014	A	A	39761014	1	1	114	0	1	0	0	0	0	0	0	0	8358	1421	49	5		5	KIF21A	12	39761014	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	8971176	39761014	94090881	225	108401											
LRRK2	120892	broad.mit.edu	37	chr12	40702915	40702915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctttatttaggtcgtgaGgaattctatagtactcatcc	7	7	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40702915	T	T	40702915	3	4	114	1	0	0	0	0	1	0	0	0	9120	991	35	2	4315	2	LRRK2	12	40702915	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	941901	40702915	93148980	226	108402											
KIF5A	3798	broad.mit.edu	37	chr12	57971452	57971452	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggcaggaggaaggagAgtcctgagggatctttccat	16	6	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57971452	T	T	57971452	1	4	114	0	1	0	0	0	0	0	0	0	8375	319	11	5		5	KIF5A	12	57971452	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	17268537	57971452	75880443	227	108403											
CDK4	1019	broad.mit.edu	37	chr12	58145430	58145430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggccactgtggggatcaCgggccttgtacactgtccca	13	12	1	0	rs104894340		TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58145430	A	A	58145430	3	1	114	1	0	0	0	0	1	0	0	0	3171	536	19	3	868	3	CDK4	12	58145430	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	173978	58145430	75706465	228	108404											
LRRIQ1	84125	broad.mit.edu	37	chr12	85449619	85449619	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggataaaagaagagagaAaaaagcaaaaggaagaggaa	12	1	0	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85449619	C	C	85449619	3	2	114	1	0	0	0	0	1	0	0	0	9116	15	1	5	1074	5	LRRIQ1	12	85449619	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	27304189	85449619	48402276	229	108405											
ALX1	8092	broad.mit.edu	37	chr12	85680674	85680674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatggagaaaaagggaacGttatggccaaatacaacaag	10	6	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85680674	T	T	85680674	3	4	114	1	0	0	0	0	1	0	0	0	556	1145	40	3	585	3	ALX1	12	85680674	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	231055	85680674	48171221	230	108406											
C12orf63	374467	broad.mit.edu	37	chr12	97102361	97102361	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtatttttctaatttgctCtttttccttttttccatttt	2	7	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97102361	T	T	97102361	1	4	114	0	1	0	0	0	0	0	0	0	1719	928	32	4		4	C12orf63	12	97102361	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	11421687	97102361	36749534	231	108407											
PXN	5829	broad.mit.edu	37	chr12	120651681	120651681	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaggatgccacagcgtgttGagggctgagatatagttctc	13	8	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120651681	A	A	120651681	2	1	114	1	0	0	0	0	0	0	0	1	12960	1277	45	4		4	PXN	12	120651681	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	23549320	120651681	13200214	232	108408											
P2RX7	5027	broad.mit.edu	37	chr12	121605550	121605550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactttctctaagaactagGtgataactgaattttttcca	6	7	1	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121605550	T	T	121605550	1	4	114	0	1	0	0	0	0	0	0	0	11439	1276	44	3		3	P2RX7	12	121605550	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	953869	121605550	12246345	233	108409											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123699212	123699212	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagttgttttttaaaaaTaatgctctaaaaatctaagt	6	4	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123699212	C	C	123699212	1	2	114	0	1	0	0	0	0	0	0	0	9822	1421	49	5		5	MPHOSPH9	12	123699212	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	2093662	123699212	10152683	234	108410											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123706321	123706321	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catttctctcactgcttagaGaaaaaaaacccatttgactt	4	10	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123706321	C	C	123706321	3	2	114	1	0	0	0	0	1	0	0	0	9822	942	33	4	3161	4	MPHOSPH9	12	123706321	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	7109	123706321	10145574	235	108411											
AACS	65985	broad.mit.edu	37	chr12	125561082	125561082	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatgtccccgagtggttcAaaggcagtcggctcaactat	11	11	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125561082	G	G	125561082	3	3	114	1	0	0	0	0	1	0	0	0	9	131	5	5	293	5	AACS	12	125561082	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	1854761	125561082	8290813	236	108412											
GLT1D1	144423	broad.mit.edu	37	chr12	129442039	129442039	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgactcatcttgccgcaGaggctcttgaaatgactgcc	9	14	3	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129442039	A	A	129442039	1	1	114	0	1	0	0	0	0	0	0	0	6529	957	33	4		4	GLT1D1	12	129442039	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	3880957	129442039	4409856	237	108413											
HMGB1	3146	broad.mit.edu	37	chr13	31116932	31116932	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacgttggaccttggaccttCactttctctgtggaagtctc	9	11	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31116932	G	G	31116932	1	3	114	0	1	0	0	0	0	0	0	0	7292	841	29	4		4	HMGB1	13	31116932	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08		31116932	84052946	238	108414											
DCLK1	9201	broad.mit.edu	37	chr13	36379924	36379924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaatgagctcctgtgaaGgggaacgttagagtccattt	13	6	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36379924	T	T	36379924	1	4	114	0	1	0	0	0	0	0	0	0	4324	1015	35	2		2	DCLK1	13	36379924	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	5262992	36379924	78789954	239	108415											
KCTD4	386618	broad.mit.edu	37	chr13	45768147	45768147	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttgacgatattgaaaactCctctggaaatccatccagcc	6	11	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45768147	T	T	45768147	3	4	114	1	0	0	0	0	1	0	0	0	8181	864	30	4	227	4	KCTD4	13	45768147	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	9388223	45768147	69401731	240	108416											
SETDB2	83852	broad.mit.edu	37	chr13	50059943	50059943	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgtagctcattttcttaGattccataataaacatgctg	5	9	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50059943	T	T	50059943	1	4	114	0	1	0	0	0	0	0	0	0	14252	957	33	3		3	SETDB2	13	50059943	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	4291796	50059943	65109935	241	108417											
DIAPH3	81624	broad.mit.edu	37	chr13	60566764	60566764	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgggtttccaacattaaaGaaagagtaacaaacgtaaac	7	7	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60566764	C	C	60566764	1	2	114	0	1	0	0	0	0	0	0	0	4560	957	33	4		4	DIAPH3	13	60566764	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	10506821	60566764	54603114	242	108418											
UGGT2	55757	broad.mit.edu	37	chr13	96624892	96624892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttataaatagacgagcatCgcctggctgaattttaaatc	7	7	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96624892	T	T	96624892	3	4	114	1	0	0	0	0	1	0	0	0	17068	884	31	4	3540	4	UGGT2	13	96624892	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	36058128	96624892	18544986	243	108419											
PABPN1	8106	broad.mit.edu	37	chr14	23776927	23776927	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgctccttctgattctctCttcatatattcatgccagtc	5	12	5	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23776927	T	T	23776927	1	4	114	0	1	0	0	0	0	0	0	0	11462	928	32	4		4	PABPN1	14	23776927	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08		23776927	83572613	244	108420											
TRAPPC6B	122553	broad.mit.edu	37	chr14	39628703	39628703	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacctttctatcaatccttGtcccactcgaaaccccatgt	3	16	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39628703	C	C	39628703	3	2	114	1	0	0	0	0	1	0	0	0	16588	1386	48	4	363	4	TRAPPC6B	14	39628703	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	15851776	39628703	67720837	245	108421											
NIN	51199	broad.mit.edu	37	chr14	51288719	51288719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcccgtcgtgtcaaaaCtgtcaaacagctccttgagt	9	12	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51288719	A	A	51288719	3	1	114	1	0	0	0	0	1	0	0	0	10512	565	20	3	6609	3	NIN	14	51288719	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	11660016	51288719	56060821	246	108422											
DNAL1	83544	broad.mit.edu	37	chr14	74125780	74125780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttttgtttgcttagtGtaattctctctttggcaagg	8	5	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74125780	T	T	74125780	1	4	114	0	1	0	0	0	0	0	0	0	4697	1392	48	3		3	DNAL1	14	74125780	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	22837061	74125780	33223760	247	108423											
TRPM1	4308	broad.mit.edu	37	chr15	31342956	31342956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcccacacatatgtacaGgtgcacacggactccatccc	7	15	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31342956	T	T	31342956	1	4	114	0	1	0	0	0	0	0	0	0	16710	1015	35	2		2	TRPM1	15	31342956	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08		31342956	71188436	248	108424											
SQRDL	58472	broad.mit.edu	37	chr15	45981368	45981368	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcgcctttccatgtatctCatgaaagctgacctgatgcc	9	12	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45981368	G	G	45981368	2	3	114	1	0	0	0	0	0	0	0	1	15247	813	29	4		4	SQRDL	15	45981368	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	14638412	45981368	56550024	249	108425											
CEP152	22995	broad.mit.edu	37	chr15	49089788	49089788	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attatagccctattagataaCaagagtaaaacaaaagcacg	6	7	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49089788	G	G	49089788	1	3	114	0	1	0	0	0	0	0	0	0	3278	493	17	4		4	CEP152	15	49089788	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	3108420	49089788	53441604	250	108426											
NPTN	27020	broad.mit.edu	37	chr15	73862486	73862486	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctattttgtagggatgctCttaccgtcaggaacctcatc	9	10	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73862486	G	G	73862486	1	3	114	0	1	0	0	0	0	0	0	0	10696	928	32	4		4	NPTN	15	73862486	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	24772698	73862486	28668906	251	108427											
C15orf26	161502	broad.mit.edu	37	chr15	81440802	81440802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatgcctcgtcctccatGttggatctgcccaaaccacc	9	15	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81440802	T	T	81440802	3	4	114	1	0	0	0	0	1	0	0	0	1800	1377	48	3	860	3	C15orf26	15	81440802	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	7578316	81440802	21090590	252	108428											
SH3GL3	6457	broad.mit.edu	37	chr15	84245390	84245390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttacgattataaaaagaaacGagtaggtaagataccagacg	9	5	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84245390	T	T	84245390	3	4	114	1	0	0	0	0	1	0	0	0	14365	1058	37	3	543	3	SH3GL3	15	84245390	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	2804588	84245390	18286002	253	108429											
NTRK3	4916	broad.mit.edu	37	chr15	88679303	88679303	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaagataacaatcagAtagcttctacaaggatggct	7	6	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88679303	T	T	88679303	1	4	114	0	1	0	0	0	0	0	0	0	10803	348	12	5		5	NTRK3	15	88679303	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	4433913	88679303	13852089	254	108430											
BAIAP3	8938	broad.mit.edu	37	chr16	1392790	1392790	+	Missense_Mutation	SNP	T	A	A													gctgctgctcagccatctgcTgcggttggagcactcagcag							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1392790	A	A	1392790	3	1	114	1	0	0	0	0	1	0	0	0	1309	1580	55	5	1291	5	BAIAP3	16	1392790	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08		1392790	88961963	255	108431	468	2									
BAIAP3	8938	broad.mit.edu	37	chr16	1392793	1392793	+	Missense_Mutation	SNP	G	T	T													gctgctcagccatctgctgcGgttggagcactcagcagagg							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1392793	T	T	1392793	3	4	114	1	0	0	0	0	1	0	0	0	1309	1116	39	1	1294	1	BAIAP3	16	1392793	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	3	1392793	88961960	256	108432	468	2									
USP7	7874	broad.mit.edu	37	chr16	8994541	8994541	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttgtctaacgtttaataTggccagatagtcttccatgt	8	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8994541	A	A	8994541	1	1	114	0	1	0	0	0	0	0	0	0	17215	1479	51	5		5	USP7	16	8994541	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	7601748	8994541	81360212	257	108433											
ACSM2A	123876	broad.mit.edu	37	chr16	20481060	20481060	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgagtatctacatgtctCagcctgggttttaactaaaa	8	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20481060	T	T	20481060	1	4	114	0	1	0	0	0	0	0	0	0	183	841	29	4		4	ACSM2A	16	20481060	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	11486519	20481060	69873693	258	108434											
OTOA	146183	broad.mit.edu	37	chr16	21730539	21730539	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtaactcggcctgggtGctgaacaggcctttcagagc	12	10	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21730539	C	C	21730539	1	2	114	0	1	0	0	0	0	0	0	0	11396	1334	46	4		4	OTOA	16	21730539	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1249479	21730539	68624214	259	108435											
ATP2A1	487	broad.mit.edu	37	chr16	28898967	28898968	+	Frame_Shift_Ins	INS	-	G	G													acttcaacgaccccgtccatINSgggggctcctggttccgcgg							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28898968	G	G	28898967	7	5	114	1	0	1	1	0	0	0	0	0	1140	1461	51	0	882	0	ATP2A1	16	28898967	Frame_Shift_Ins	INS	-	TCGA-44-3396-01A-01D-1265-08	7168428	28898967	61455786	260	108436											
ITGAL	3683	broad.mit.edu	37	chr16	30495497	30495497	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaatttgcatcaaaacccGcgagcgagtttgtgaaaatt	8	8	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30495497	A	A	30495497	3	1	114	1	0	0	0	0	1	0	0	0	7956	1087	38	4	953	4	ITGAL	16	30495497	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1596530	30495497	59859256	261	108437											
PHKG2	5261	broad.mit.edu	37	chr16	30768316	30768316	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcagaaccgggcggctctCtttcagcaccggccccctgg	12	17	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30768316	A	A	30768316	2	1	114	1	0	0	0	0	0	0	0	1	11942	900	32	3		3	PHKG2	16	30768316	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	272819	30768316	59586437	262	108438											
SETD1A	9739	broad.mit.edu	37	chr16	30972797	30972797	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggggcgccaaggaaacggtCaaaaacctccaccttacctc	9	15	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30972797	T	T	30972797	2	4	114	1	0	0	0	0	0	0	0	1	14243	813	29	4		4	SETD1A	16	30972797	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	204481	30972797	59381956	263	108439											
ITGAM	3684	broad.mit.edu	37	chr16	31341648	31341648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgctccatcgctgtctGccagagaatccagtgtgaca	10	12	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31341648	T	T	31341648	3	4	114	1	0	0	0	0	1	0	0	0	7957	1319	46	3	3189	3	ITGAM	16	31341648	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	368851	31341648	59013105	264	108440											
PAPD5	64282	broad.mit.edu	37	chr16	50185488	50185488	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcttttcaaaggcacctcGaatatctgcctggagcctac	9	12	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50185488	A	A	50185488	1	1	114	0	1	0	0	0	0	0	0	0	11519	1073	37	4		4	PAPD5	16	50185488	5'Flank	SNP	G	TCGA-44-3396-01A-01D-1265-08	18843840	50185488	40169265	265	108441											
GNAO1	2775	broad.mit.edu	37	chr16	56226452	56226452	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttcccttaagctgacactCaccagtttttccccactgtc	5	15	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56226452	T	T	56226452	1	4	114	0	1	0	0	0	0	0	0	0	6572	841	29	4		4	GNAO1	16	56226452	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	6040964	56226452	34128301	266	108442											
NLRC5	84166	broad.mit.edu	37	chr16	57063703	57063703	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttttcgggacaaccagctCagtgaccaggtggtgctgaa	13	9	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57063703	T	T	57063703	2	4	114	1	0	0	0	0	0	0	0	1	10565	813	29	4		4	NLRC5	16	57063703	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	837251	57063703	33291050	267	108443											
NIP7	51388	broad.mit.edu	37	chr16	69373735	69373735	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaacccagggggaaaaatGcggcctttgactgaagagga	13	9	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69373735	A	A	69373735	3	1	114	1	0	0	0	0	1	0	0	0	10516	1319	46	4	5	4	NIP7	16	69373735	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	12310032	69373735	20981018	268	108444											
SF3B3	23450	broad.mit.edu	37	chr16	70572904	70572904	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttgttgacccctggtcaGatatgaaatacagtatttta	8	6	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70572904	T	T	70572904	1	4	114	0	1	0	0	0	0	0	0	0	14265	957	33	3		3	SF3B3	16	70572904	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1199169	70572904	19781849	269	108445											
TAT	6898	broad.mit.edu	37	chr16	71604652	71604652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagccaggaaccagccagCgcttggccagccctccacag	10	18	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71604652	A	A	71604652	3	1	114	1	0	0	0	0	1	0	0	0	15709	768	27	3	542	3	TAT	16	71604652	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	1031748	71604652	18750101	270	108446											
GLG1	2734	broad.mit.edu	37	chr16	74524978	74524978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgtagggtccgcccttttCgatgtaatccggaacaatgg	12	9	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74524978	A	A	74524978	3	1	114	1	0	0	0	0	1	0	0	0	6500	884	31	3	2325	3	GLG1	16	74524978	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	2920326	74524978	15829775	271	108447											
WDR59	79726	broad.mit.edu	37	chr16	74920199	74920199	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcatgctggtcgcgttctcGctcacggggatcactgtagg	13	11	4	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74920199	A	A	74920199	4	1	114	1	0	0	0	0	0	1	0	0	17435	1095	38	4	421	4	WDR59	16	74920199	Nonsense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	395221	74920199	15434554	272	108448											
ITGAE	3682	broad.mit.edu	37	chr17	3649126	3649126	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgctccactccctcaggcAgcccagacagcttcttacgt	8	17	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3649126	C	C	3649126	3	2	114	1	0	0	0	0	1	0	0	0	7955	188	7	5	1344	5	ITGAE	17	3649126	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08		3649126	77546084	273	108449											
POLR2A	5430	broad.mit.edu	37	chr17	7405004	7405004	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacaataacttcaagtctAtggtcgtgtccggagctaaa	8	8	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7405004	G	G	7405004	3	3	114	1	0	0	0	0	1	0	0	0	12309	449	16	5	2359	5	POLR2A	17	7405004	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	3755878	7405004	73790206	274	108450											
TP53	7157	broad.mit.edu	37	chr17	7577081	7577081	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttgcggagattctctTcctctgtgcgccggtctctc	9	14	4	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7577081	C	C	7577081	3	2	114	1	0	0	0	0	1	0	0	0	16505	1783	62	5	429	5	TP53	17	7577081	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	172077	7577081	73618129	275	108451											
GAS7	8522	broad.mit.edu	37	chr17	9846411	9846411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacactggtgccaggcccCagggctgggaggggcccagg	19	12	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9846411	A	A	9846411	1	1	114	0	1	0	0	0	0	0	0	0	6312	609	21	2		2	GAS7	17	9846411	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2269330	9846411	71348799	276	108452											
C17orf48	56985	broad.mit.edu	37	chr17	10614344	10614344	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagttattgaaacagctccAgacagccaagcctttggcac	10	11	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10614344	T	T	10614344	2	4	114	1	0	0	0	0	0	0	0	1	1875	175	7	5		5	C17orf48	17	10614344	Silent	SNP	A	TCGA-44-3396-01A-01D-1265-08	767933	10614344	70580866	277	108453											
SSH2	85464	broad.mit.edu	37	chr17	28030135	28030135	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggaaaggaaatcaaagagTaggatggataaccacttttg	11	4	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28030135	A	A	28030135	1	1	114	0	1	0	0	0	0	0	0	0	15303	1653	57	5		5	SSH2	17	28030135	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	17415791	28030135	53165075	278	108454											
UTP6	55813	broad.mit.edu	37	chr17	30207441	30207441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaacaagactctgcctccCaataaaaaaaaaaaaaaaag	4	9	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30207441	A	A	30207441	1	1	114	0	1	0	0	0	0	0	0	0	17229	609	21	2		2	UTP6	17	30207441	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2177306	30207441	50987769	279	108455											
ACCN1	40	broad.mit.edu	37	chr17	31438889	31438889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttcagagtcaggcctgCaaccctccaccatcacccaa	6	18	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31438889	A	A	31438889	1	1	114	0	1	0	0	0	0	0	0	0	128	725	25	3		3	ACCN1	17	31438889	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1231448	31438889	49756321	280	108456											
NLE1	54475	broad.mit.edu	37	chr17	33460195	33460195	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcccccacactcacatccgGaggcatttgtccttcccacc	5	19	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33460195	C	C	33460195	2	2	114	1	0	0	0	0	0	0	0	1	10555	1161	41	4		4	NLE1	17	33460195	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	2021306	33460195	47735015	281	108457											
TADA2A	6871	broad.mit.edu	37	chr17	35798038	35798038	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaaagtatgtgttgctttCctatcaacccatgatttaga	8	7	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35798038	A	A	35798038	1	1	114	0	1	0	0	0	0	0	0	0	15629	870	30	3		3	TADA2A	17	35798038	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2337843	35798038	45397172	282	108458											
MED1	5469	broad.mit.edu	37	chr17	37566052	37566052	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccagagcttgaagaatctcGaagaggggtgccaatggctg	14	9	1	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37566052	A	A	37566052	4	1	114	1	0	0	0	0	0	1	0	0	9518	1066	37	4	2327	4	MED1	17	37566052	Nonsense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1768014	37566052	43629158	283	108459											
TTC25	83538	broad.mit.edu	37	chr17	40093098	40093098	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccaagtggaaggcctcgctCaagagtgagaagactgtccg	13	11	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40093098	G	G	40093098	2	3	114	1	0	0	0	0	0	0	0	1	16819	813	29	4		4	TTC25	17	40093098	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	2527046	40093098	41102112	284	108460											
BRCA1	672	broad.mit.edu	37	chr17	41244550	41244550	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgttcctcaaagttttcctCtagcagatttttcttacatt	4	9	3	1	rs80357124		TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41244550	G	G	41244550	3	3	114	1	0	0	0	0	1	0	0	0	1507	922	32	4	2719	4	BRCA1	17	41244550	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	1151452	41244550	39950660	285	108461											
DGKE	8526	broad.mit.edu	37	chr17	54912529	54912529	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctggacgccatgcccCaccactggatccggggcaac	12	16	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54912529	T	T	54912529	3	4	114	1	0	0	0	0	1	0	0	0	4508	594	21	4	375	4	DGKE	17	54912529	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	13667979	54912529	26282681	286	108462											
PPM1D	8493	broad.mit.edu	37	chr17	58725387	58725387	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atggactttggaatatgattCcaccacaagatgccatctca	7	10	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58725387	G	G	58725387	3	3	114	1	0	0	0	0	1	0	0	0	12438	855	30	4	975	4	PPM1D	17	58725387	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	3812858	58725387	22469823	287	108463											
TANC2	26115	broad.mit.edu	37	chr17	61498475	61498475	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataccgaggtggcgtgagatAcagccagacaccacagatcg	12	11	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61498475	G	G	61498475	3	3	114	1	0	0	0	0	1	0	0	0	15664	391	14	5	5230	5	TANC2	17	61498475	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	2773088	61498475	19696735	288	108464											
POLG2	11232	broad.mit.edu	37	chr17	62492601	62492601	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctactagctgttccttactCagctctttgtcttgcaagat	7	11	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62492601	T	T	62492601	2	4	114	1	0	0	0	0	0	0	0	1	12296	813	29	4		4	POLG2	17	62492601	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	994126	62492601	18702609	289	108465											
HELZ	9931	broad.mit.edu	37	chr17	65185652	65185652	+	Intron	DEL	C	-	-													agattcaaaggtcaaaaaaaCgttcagaaaattaaacacaa							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65185652	-	-	65185652	6	5	114	0	1	1	0	1	0	0	0	0	7116	551	19	0		0	HELZ	17	65185652	Intron	DEL	C	TCGA-44-3396-01A-01D-1265-08	2693051	65185652	16009558	290	108466											
PITPNC1	26207	broad.mit.edu	37	chr17	65374344	65374344	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgccgcgcccggcccggcctCgcccgctccgggacccccgc	13	25	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65374344	T	T	65374344	1	4	114	0	1	0	0	0	0	0	0	0	12044	899	31	4		4	PITPNC1	17	65374344	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	188692	65374344	15820866	291	108467											
SLC39A11	201266	broad.mit.edu	37	chr17	70732859	70732859	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactccaacagcgagaccctCtgaaatagatgtaagaaaag	8	9	1	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70732859	G	G	70732859	5	3	114	1	0	0	0	0	0	0	1	0	14728	927	32	4	422	4	SLC39A11	17	70732859	Splice_Site	SNP	C	TCGA-44-3396-01A-01D-1265-08	5358515	70732859	10462351	292	108468											
COG1	9382	broad.mit.edu	37	chr17	71197584	71197584	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcttacctcccctctgatGactcatcactgcccaaggac	7	16	3	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71197584	A	A	71197584	3	1	114	1	0	0	0	0	1	0	0	0	3689	1290	45	4	1644	4	COG1	17	71197584	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	464725	71197584	9997626	293	108469											
GPRC5C	55890	broad.mit.edu	37	chr17	72439809	72439809	+	Intron	DEL	G	-	-													cacaacctcacccccaagttGgccactcctgggttagagac					rs3840056		TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72439809	-	-	72439809	6	5	114	0	1	1	0	1	0	0	0	0	6792	1363	47	0		0	GPRC5C	17	72439809	Intron	DEL	G	TCGA-44-3396-01A-01D-1265-08	1242225	72439809	8755401	294	108470											
CD300LB	124599	broad.mit.edu	37	chr17	72527484	72527484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcagagcagggggcagCcacatggctctgccttcccg	15	13	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72527484	A	A	72527484	3	1	114	1	0	0	0	0	1	0	0	0	3029	740	26	3	615	3	CD300LB	17	72527484	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	87675	72527484	8667726	295	108471											
TMC8	147138	broad.mit.edu	37	chr17	76129661	76129661	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accttcaccccttccccaggGaatcttccctgatcacccct	4	20	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76129661	A	A	76129661	1	1	114	0	1	0	0	0	0	0	0	0	16114	1189	41	4		4	TMC8	17	76129661	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	3602177	76129661	5065549	296	108472											
CLUL1	27098	broad.mit.edu	37	chr18	645015	645015	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacactcaagatccctcttGaagaaagtgctgagagttct	8	10	4	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	645015	A	A	645015	3	1	114	1	0	0	0	0	1	0	0	0	3602	1291	45	4	1341	4	CLUL1	18	645015	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08		645015	77432233	297	108473											
TWSG1	57045	broad.mit.edu	37	chr18	9396447	9396447	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagaactttcacatcatgaGaatctggtttcatttttaga	7	6	4	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9396447	A	A	9396447	2	1	114	1	0	0	0	0	0	0	0	1	16911	933	33	4		4	TWSG1	18	9396447	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	8751432	9396447	68680801	298	108474											
ROCK1	6093	broad.mit.edu	37	chr18	18622485	18622485	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagtggcaagttttgagatGaacaactgtaatagagagac	11	5	0	4			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18622485	A	A	18622485	1	1	114	0	1	0	0	0	0	0	0	0	13628	1305	45	4		4	ROCK1	18	18622485	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	9226038	18622485	59454763	299	108475											
GALNT1	2589	broad.mit.edu	37	chr18	33282891	33282891	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggaaacgaatcagtgtctaGataacatggctagaaaagag	11	5	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33282891	C	C	33282891	3	2	114	1	0	0	0	0	1	0	0	0	6269	942	33	4	1364	4	GALNT1	18	33282891	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	14660406	33282891	44794357	300	108476											
GALNT1	2589	broad.mit.edu	37	chr18	33283427	33283427	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattgggcatttaaaatgctGactaatttattttttctgtt	6	4	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33283427	A	A	33283427	1	1	114	0	1	0	0	0	0	0	0	0	6269	1305	45	4		4	GALNT1	18	33283427	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	536	33283427	44793821	301	108477											
PIK3C3	5289	broad.mit.edu	37	chr18	39647380	39647380	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaattccgcttagacctgtCggatgaagaggctgtgcatt	11	8	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39647380	T	T	39647380	3	4	114	1	0	0	0	0	1	0	0	0	12007	893	31	4	2646	4	PIK3C3	18	39647380	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	6363953	39647380	38429868	302	108478											
ATP5A1	498	broad.mit.edu	37	chr18	43671709	43671709	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcctcagcccatgtacgCgggcaataccatcaccaata	6	15	2	0	rs146467617	byFrequency	TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43671709	T	T	43671709	3	4	114	1	0	0	0	0	1	0	0	0	1151	768	27	4	1453	4	ATP5A1	18	43671709	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4024329	43671709	34405539	303	108479											
ALPK2	115701	broad.mit.edu	37	chr18	56203560	56203560	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttcagagggggccaattCaggcacaacagcatctgcct	10	11	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56203560	G	G	56203560	3	3	114	1	0	0	0	0	1	0	0	0	545	835	29	4	2689	4	ALPK2	18	56203560	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	12531851	56203560	21873688	304	108480											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60028991	60028991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctgccatcatctttgGcgtttgctataggaaaaaag	12	7	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60028991	T	T	60028991	3	4	114	1	0	0	0	0	1	0	0	0	16407	1203	42	3	721	3	TNFRSF11A	18	60028991	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	3825431	60028991	18048257	305	108481											
RTTN	25914	broad.mit.edu	37	chr18	67865080	67865080	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatcttttgggtctcagctGagatatcacttctccagaaa	7	10	4	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67865080	C	C	67865080	1	2	114	0	1	0	0	0	0	0	0	0	13848	1305	45	4		4	RTTN	18	67865080	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	7836089	67865080	10212168	306	108482											
ATCAY	85300	broad.mit.edu	37	chr19	3918722	3918722	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaggggacaggaaaaccaGagaggccagtactagctgag	14	10	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3918722	C	C	3918722	1	2	114	0	1	0	0	0	0	0	0	0	1081	957	33	4		4	ATCAY	19	3918722	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08		3918722	55210261	307	108483											
FUT3	2525	broad.mit.edu	37	chr19	5844225	5844225	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcctgcaggctctggtagTagcgcaccctggctgagtcc	14	13	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5844225	C	C	5844225	3	2	114	1	0	0	0	0	1	0	0	0	6165	1638	57	5	463	5	FUT3	19	5844225	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	1925503	5844225	53284758	308	108484											
RDH8	50700	broad.mit.edu	37	chr19	10132207	10132207	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctcagggcctccattctgCaggccattgtcaacgtcatc	9	15	4	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10132207	G	G	10132207	1	3	114	0	1	0	0	0	0	0	0	0	13304	725	25	4		4	RDH8	19	10132207	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	4287982	10132207	48996776	309	108485											
QTRT1	81890	broad.mit.edu	37	chr19	10823252	10823252	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccactgatctggtagtctGcgtggctcttggatgtgaca	13	9	3	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10823252	C	C	10823252	3	2	114	1	0	0	0	0	1	0	0	0	12993	1319	46	4	835	4	QTRT1	19	10823252	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	691045	10823252	48305731	310	108486											
RAB3D	9545	broad.mit.edu	37	chr19	11446296	11446296	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccgggggggttaggggtcaGaggagagggcaaagatcagg	22	5	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11446296	A	A	11446296	1	1	114	0	1	0	0	0	0	0	0	0	13042	957	33	4		4	RAB3D	19	11446296	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	623044	11446296	47682687	311	108487											
ZNF763	284390	broad.mit.edu	37	chr19	12087895	12087895	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgctgtgaacttcacccagGaggagtgggctttgctggat	14	8	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12087895	T	T	12087895	4	4	114	1	0	0	0	0	0	1	0	0	18266	1175	41	3	61	3	ZNF763	19	12087895	Nonsense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	641599	12087895	47041088	312	108488											
FARSA	2193	broad.mit.edu	37	chr19	13035487	13035487	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactcccgcagaacgcccatGaggtggcccaaggtgagacc	12	14	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13035487	A	A	13035487	2	1	114	1	0	0	0	0	0	0	0	1	5736	1277	45	4		4	FARSA	19	13035487	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	947592	13035487	46093496	313	108489											
SLC1A6	6511	broad.mit.edu	37	chr19	15079239	15079239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatgccgatgaagaccgCgatgatggtggtcaccatgt	15	8	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15079239	A	A	15079239	3	1	114	1	0	0	0	0	1	0	0	0	14549	768	27	3	1298	3	SLC1A6	19	15079239	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	2043752	15079239	44049744	314	108490											
C19orf44	84167	broad.mit.edu	37	chr19	16611553	16611553	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaggagccattgaatgctcAatacaaacagcaggtactct	9	9	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16611553	G	G	16611553	1	3	114	0	1	0	0	0	0	0	0	0	1946	145	5	5		5	C19orf44	19	16611553	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	1532314	16611553	42517430	315	108491											
FAM129C	199786	broad.mit.edu	37	chr19	17653042	17653042	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcttggggcagctggcagCaccgtttggctttctgggga	17	10	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17653042	T	T	17653042	3	4	114	1	0	0	0	0	1	0	0	0	5484	710	25	4	1403	4	FAM129C	19	17653042	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	1041489	17653042	41475941	316	108492											
ZNF257	113835	broad.mit.edu	37	chr19	22272062	22272062	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accggtcttcacacctttctCaacataagataattcatact	3	12	4	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22272062	G	G	22272062	3	3	114	1	0	0	0	0	1	0	0	0	17926	827	29	4	1524	4	ZNF257	19	22272062	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4619020	22272062	36856921	317	108493											
NPHS1	4868	broad.mit.edu	37	chr19	36322010	36322010	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctgggggctgaagtccctCagggagcggtaatacggctc	16	10	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36322010	T	T	36322010	2	4	114	1	0	0	0	0	0	0	0	1	10677	813	29	4		4	NPHS1	19	36322010	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	14049948	36322010	22806973	318	108494											
FCGBP	8857	broad.mit.edu	37	chr19	40405804	40405804	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctaggtctgtgacctcaatCtttagtcctgtgcacctccc	7	15	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40405804	A	A	40405804	1	1	114	0	1	0	0	0	0	0	0	0	5835	928	32	3		3	FCGBP	19	40405804	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	4083794	40405804	18723179	319	108495											
POU2F2	5452	broad.mit.edu	37	chr19	42599884	42599884	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgagcatgagaaggggcctCccgcggccagcggccactgc	16	14	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42599884	A	A	42599884	1	1	114	0	1	0	0	0	0	0	0	0	12368	870	30	3		3	POU2F2	19	42599884	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	2194080	42599884	16529099	320	108496											
PSG9	5678	broad.mit.edu	37	chr19	43773663	43773663	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcacggctgtcagctgtGctgtccttcctccttctgtg	11	13	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43773663	A	A	43773663	1	1	114	0	1	0	0	0	0	0	0	0	12768	1334	46	4		4	PSG9	19	43773663	5'UTR	SNP	G	TCGA-44-3396-01A-01D-1265-08	1173779	43773663	15355320	321	108497											
BCAM	4059	broad.mit.edu	37	chr19	45314630	45314630	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcttggggctggggggcctgGagtcagggcacagcagggca	21	9	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45314630	C	C	45314630	1	2	114	0	1	0	0	0	0	0	0	0	1349	1189	41	4		4	BCAM	19	45314630	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1540967	45314630	13814353	322	108498											
APOC1	341	broad.mit.edu	37	chr19	45422551	45422551	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaccccagcgcctgtgctGaggactccctccatgtggcc	10	18	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45422551	C	C	45422551	1	2	114	0	1	0	0	0	0	0	0	0	799	1305	45	4		4	APOC1	19	45422551	3'UTR	SNP	G	TCGA-44-3396-01A-01D-1265-08	107921	45422551	13706432	323	108499											
SFRS16	11129	broad.mit.edu	37	chr19	45559743	45559743	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgtaccagatctacattGatgagttgtacggaggcctc	11	10	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45559743	A	A	45559743	3	1	114	1	0	0	0	0	1	0	0	0	14285	1290	45	4	433	4	SFRS16	19	45559743	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	137192	45559743	13569240	324	108500											
ZC3H4	23211	broad.mit.edu	37	chr19	47569697	47569697	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctcaccctcgcgggcCggactgttcccagcaaatgg	11	16	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47569697	A	A	47569697	2	1	114	1	0	0	0	0	0	0	0	1	17696	639	23	1		1	ZC3H4	19	47569697	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	2009954	47569697	11559286	325	108501											
CRX	1406	broad.mit.edu	37	chr19	48342693	48342693	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaagaggaaggcgggcacGtccccaagaccctccacaga	12	15	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48342693	A	A	48342693	2	1	114	1	0	0	0	0	0	0	0	1	3934	1132	40	4		4	CRX	19	48342693	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	772996	48342693	10786290	326	108502											
LIG1	3978	broad.mit.edu	37	chr19	48643129	48643129	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttctcctcaaccctgtttCacagcctctctccaccatct	2	20	5	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48643129	G	G	48643129	1	3	114	0	1	0	0	0	0	0	0	0	8853	841	29	4		4	LIG1	19	48643129	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	300436	48643129	10485854	327	108503											
TSKS	60385	broad.mit.edu	37	chr19	50250812	50250812	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtctgtttccatccagGctccaggcctcctagccccc	8	19	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50250812	A	A	50250812	1	1	114	0	1	0	0	0	0	0	0	0	16751	1218	42	4		4	TSKS	19	50250812	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	1607683	50250812	8878171	328	108504											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52149116	52149116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgaggttggtgccatGgtcctcgggcctgggggtga	19	8	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52149116	T	T	52149116	3	4	114	1	0	0	0	0	1	0	0	0	14422	1348	47	2	591	2	SIGLEC14	19	52149116	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1898304	52149116	6979867	329	108505											
ZNF616	90317	broad.mit.edu	37	chr19	52618739	52618739	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgtaagacgtgaacattGactgaagaccttgccacatt	8	10	0	5			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52618739	A	A	52618739	4	1	114	1	0	0	0	0	0	1	0	0	18168	1299	45	4	671	4	ZNF616	19	52618739	Nonsense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	469623	52618739	6510244	330	108506											
TSEN34	79042	broad.mit.edu	37	chr19	54696204	54696204	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcggctggcaagttcggagGtgacttcctggtctatcctg	14	10	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54696204	C	C	54696204	3	2	114	1	0	0	0	0	1	0	0	0	16738	1261	44	4	735	4	TSEN34	19	54696204	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	2077465	54696204	4432779	331	108507											
KIR2DL1	3802	broad.mit.edu	37	chr19	55290180	55290180	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaaccttggattcaggCgttgactcagcatctcacag	12	10	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55290180	T	T	55290180	1	4	114	0	1	0	0	0	0	0	0	0	8387	783	27	4		4	KIR2DL1	19	55290180	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	593976	55290180	3838803	332	108508											
PDYN	5173	broad.mit.edu	37	chr20	1961296	1961296	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgttcagctgggcatccctCatcagctcagactctgctcc	8	16	5	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1961296	T	T	1961296	3	4	114	1	0	0	0	0	1	0	0	0	11793	826	29	4	330	4	PDYN	20	1961296	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08		1961296	61064224	333	108509											
HAO1	54363	broad.mit.edu	37	chr20	7915177	7915177	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgagccatgcgctgcatGgccgtagcccccacacatat	9	15	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7915177	T	T	7915177	2	4	114	1	0	0	0	0	0	0	0	1	7017	1335	47	2		2	HAO1	20	7915177	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	5953881	7915177	55110343	334	108510											
JAG1	182	broad.mit.edu	37	chr20	10626470	10626470	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggactcataaatgcaaatGagacacaagtgatactgtcc	8	9	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10626470	A	A	10626470	1	1	114	0	1	0	0	0	0	0	0	0	8004	1305	45	4		4	JAG1	20	10626470	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	2711293	10626470	52399050	335	108511											
DLGAP4	22839	broad.mit.edu	37	chr20	35154200	35154200	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttgttggggggttgggggGagcaggacaagcctctgctg	20	7	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35154200	T	T	35154200	1	4	114	0	1	0	0	0	0	0	0	0	4602	1189	41	3		3	DLGAP4	20	35154200	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	24527730	35154200	27871320	336	108512											
TOP1	7150	broad.mit.edu	37	chr20	39728776	39728776	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaaagagaggattgctaaCttcaagatagagcctcctgg	10	9	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39728776	G	G	39728776	3	3	114	1	0	0	0	0	1	0	0	0	16487	564	20	4	1102	4	TOP1	20	39728776	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4574576	39728776	23296744	337	108513											
SGK2	10110	broad.mit.edu	37	chr20	42195207	42195207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccacccatcatcggggGctcacttcttcccgaggcta	8	18	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42195207	T	T	42195207	1	4	114	0	1	0	0	0	0	0	0	0	14322	1218	42	3		3	SGK2	20	42195207	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	2466431	42195207	20830313	338	108514											
EYA2	2139	broad.mit.edu	37	chr20	45725774	45725774	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataattatttttcactccttActcacggggacatttgcatc	5	10	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45725774	T	T	45725774	3	4	114	1	0	0	0	0	1	0	0	0	5372	388	14	5	885	5	EYA2	20	45725774	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	3530567	45725774	17299746	339	108515											
ZFP64	55734	broad.mit.edu	37	chr20	50704831	50704831	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaattcttgtacttctAccacaccaagtcatttaagt	3	11	3	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50704831	G	G	50704831	1	3	114	0	1	0	0	0	0	0	0	0	17778	406	14	5		5	ZFP64	20	50704831	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	4979057	50704831	12320689	340	108516											
TAF4	6874	broad.mit.edu	37	chr20	60584215	60584215	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatttttacatttcttcaCgttttccatagtttcctgga	5	8	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60584215	T	T	60584215	3	4	114	1	0	0	0	0	1	0	0	0	15645	536	19	4	1524	4	TAF4	20	60584215	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	9879384	60584215	2441305	341	108517											
TAF4	6874	broad.mit.edu	37	chr20	60584236	60584236	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttccatagtttcctggaTtaaagtaaaaagatataagt	7	4	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60584236	C	C	60584236	1	2	114	0	1	0	0	0	0	0	0	0	15645	1508	52	5		5	TAF4	20	60584236	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	21	60584236	2441284	342	108518											
SRMS	6725	broad.mit.edu	37	chr20	62178813	62178813	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgcctcctgaggaacggctCcatcccccggggtcaccacg	11	19	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62178813	T	T	62178813	3	4	114	1	0	0	0	0	1	0	0	0	15270	864	30	4	1494	4	SRMS	20	62178813	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	1594577	62178813	846707	343	108519											
UMODL1	89766	broad.mit.edu	37	chr21	43560622	43560622	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggctctggggtcagctctCttagctaccaagcttagagc	11	11	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43560622	G	G	43560622	1	3	114	0	1	0	0	0	0	0	0	0	17106	928	32	4		4	UMODL1	21	43560622	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08		43560622	4569273	344	108520											
C21orf29	54084	broad.mit.edu	37	chr21	45987864	45987864	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcagaagggaccacttcCgccaggatgtccagggggcg	14	13	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45987864	T	T	45987864	2	4	114	1	0	0	0	0	0	0	0	1	2146	639	23	4		4	C21orf29	21	45987864	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	2427242	45987864	2142031	345	108521											
CLTCL1	8218	broad.mit.edu	37	chr22	19167845	19167845	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacactcacaccacaccctcAggcctgtgtttgccccacag	6	19	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19167845	G	G	19167845	1	3	114	0	1	0	0	0	0	0	0	0	3599	203	7	5		5	CLTCL1	22	19167845	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08		19167845	32136721	346	108522											
SNAP29	9342	broad.mit.edu	37	chr22	21213381	21213381	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctccttctgtttcccagaccGagagccgcgccggcaccatg	10	17	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21213381	T	T	21213381	1	4	114	0	1	0	0	0	0	0	0	0	14945	1073	37	3		3	SNAP29	22	21213381	5'UTR	SNP	G	TCGA-44-3396-01A-01D-1265-08	2045536	21213381	30091185	347	108523											
MYO18B	84700	broad.mit.edu	37	chr22	26422991	26422991	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaaaacccaattcagttccTgcgagtccctcttagaatcc	6	14	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26422991	A	A	26422991	3	1	114	1	0	0	0	0	1	0	0	0	10160	1580	55	5	7217	5	MYO18B	22	26422991	Missense_Mutation	SNP	T	TCGA-44-3396-01A-01D-1265-08	5209610	26422991	24881575	348	108524											
EMID1	129080	broad.mit.edu	37	chr22	29650081	29650081	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaccctgggctgtggcaggTagtgtggggctgcaggtgca	20	8	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29650081	G	G	29650081	1	3	114	0	1	0	0	0	0	0	0	0	5133	1653	57	5		5	EMID1	22	29650081	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	3227090	29650081	21654485	349	108525											
NIPSNAP1	8508	broad.mit.edu	37	chr22	29957768	29957768	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagagaggtgtgctgagtgGacactaacataccttattgt	11	8	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29957768	C	C	29957768	1	2	114	0	1	0	0	0	0	0	0	0	10524	1189	41	4		4	NIPSNAP1	22	29957768	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	307687	29957768	21346798	350	108526											
SFI1	9814	broad.mit.edu	37	chr22	31924785	31924785	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttacctagtaccagtcatCtagtgcagtatcgtggcaca	9	10	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31924785	T	T	31924785	2	4	114	1	0	0	0	0	0	0	0	1	14269	912	32	4		4	SFI1	22	31924785	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	1967017	31924785	19379781	351	108527											
LARGE	9215	broad.mit.edu	37	chr22	33777749	33777749	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagggtggaaaaaaaccaAcaccccacaaagatgaaaag	8	8	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33777749	G	G	33777749	1	3	114	0	1	0	0	0	0	0	0	0	8699	58	2	5		5	LARGE	22	33777749	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	1852964	33777749	17526817	352	108528											
CBX7	23492	broad.mit.edu	37	chr22	39530045	39530045	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggggcccctcggccaggtCggcatctgctgcagcgtcag	16	14	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39530045	T	T	39530045	3	4	114	1	0	0	0	0	1	0	0	0	2749	884	31	4	152	4	CBX7	22	39530045	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	5752296	39530045	11774521	353	108529											
TNRC6B	23112	broad.mit.edu	37	chr22	40697001	40697001	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagctgtacgccaacagcaaGagcagcaggtacgtgggtag	14	9	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40697001	A	A	40697001	3	1	114	1	0	0	0	0	1	0	0	0	16464	943	33	4	4103	4	TNRC6B	22	40697001	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1166956	40697001	10607565	354	108530											
TBL1X	6907	broad.mit.edu	37	chrX	9661094	9661094	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgcagtggcaaatggttccAgtgtacctggatcctcggag	13	10	0	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9661094	T	T	9661094	1	4	114	0	1	0	0	0	0	0	0	0	15761	203	7	5		5	TBL1X	23	9661094	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08		9661094	145609466	355	108531											
TLR7	51284	broad.mit.edu	37	chrX	12904699	12904699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaacttcaggtctatcgtGcatctatgaatctatcacaa	6	9	5	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12904699	T	T	12904699	3	4	114	1	0	0	0	0	1	0	0	0	16079	1319	46	3	1078	3	TLR7	23	12904699	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	3243605	12904699	142365861	356	108532											
SCML1	6322	broad.mit.edu	37	chrX	17762333	17762333	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctaacagctccagtgaaatCgatgtggtttgtattcaaat	8	7	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17762333	G	G	17762333	3	3	114	1	0	0	0	0	1	0	0	0	14022	874	31	4	29	4	SCML1	23	17762333	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4857634	17762333	137508227	357	108533											
POLA1	5422	broad.mit.edu	37	chrX	24722748	24722748	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagagaagtatggttttGtggaaaattaaacataaaaa	9	1	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24722748	A	A	24722748	1	1	114	0	1	0	0	0	0	0	0	0	12282	1392	48	4		4	POLA1	23	24722748	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	6960415	24722748	130547812	358	108534											
MAGEB18	286514	broad.mit.edu	37	chrX	26157580	26157580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcacatggagctggcaCttggtgttgatttgaaggaa	14	6	0	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26157580	A	A	26157580	3	1	114	1	0	0	0	0	1	0	0	0	9267	565	20	3	480	3	MAGEB18	23	26157580	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	1434832	26157580	129112980	359	108535											
ZNF41	7592	broad.mit.edu	37	chrX	47308566	47308566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctattatgattatgtgaGtttaaagtatgcttcaaaat	6	3	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47308566	T	T	47308566	3	4	114	1	0	0	0	0	1	0	0	0	18016	1020	36	3	1740	3	ZNF41	23	47308566	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	21150986	47308566	107961994	360	108536											
ZNF182	7569	broad.mit.edu	37	chrX	47835779	47835779	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacactcagtgcatgcataGggtttctctcccgtgtgcgt	10	13	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47835779	T	T	47835779	2	4	114	1	0	0	0	0	0	0	0	1	17876	987	35	2		2	ZNF182	23	47835779	Silent	SNP	G	TCGA-44-3396-01A-01D-1265-08	527213	47835779	107434781	361	108537											
CACNA1F	778	broad.mit.edu	37	chrX	49079354	49079354	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccaactccagggtctccCcgacccacccatcccatggt	6	21	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49079354	T	T	49079354	1	4	114	0	1	0	0	0	0	0	0	0	2569	638	22	4		4	CACNA1F	23	49079354	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1243575	49079354	106191206	362	108538											
NUDT11	55190	broad.mit.edu	37	chrX	51239057	51239057	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttctgttcgaagacgccCaggagccggcctaacttccc	11	14	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51239057	A	A	51239057	2	1	114	1	0	0	0	0	0	0	0	1	10822	581	21	2		2	NUDT11	23	51239057	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	2159703	51239057	104031503	363	108539											
PHF8	23133	broad.mit.edu	37	chrX	54029107	54029107	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggcgtcagcacagcatGgatccaccctgcagtgtaac	10	14	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54029107	A	A	54029107	3	1	114	1	0	0	0	0	1	0	0	0	11935	1348	47	4	2345	4	PHF8	23	54029107	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	2790050	54029107	101241453	364	108540											
FAM120C	54954	broad.mit.edu	37	chrX	54161289	54161289	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctagctccatttggctcatCaccatcagaggaagaggagt	11	10	3	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54161289	T	T	54161289	3	4	114	1	0	0	0	0	1	0	0	0	5464	826	29	4	1739	4	FAM120C	23	54161289	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	132182	54161289	101109271	365	108541											
IL2RG	3561	broad.mit.edu	37	chrX	70331244	70331244	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcccacagccacccttctCaccagccccctccagtccca	3	24	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70331244	A	A	70331244	1	1	114	0	1	0	0	0	0	0	0	0	7758	841	29	3		3	IL2RG	23	70331244	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	16169955	70331244	84939316	366	108542											
PGK1	5230	broad.mit.edu	37	chrX	77373668	77373668	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggccatcctgggcggGtatgaagaactctttaagat	11	9	1	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77373668	C	C	77373668	5	2	114	1	0	0	0	0	0	0	1	0	11885	1275	44	4	664	4	PGK1	23	77373668	Splice_Site	SNP	G	TCGA-44-3396-01A-01D-1265-08	7042424	77373668	77896892	367	108543											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912563	77912563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaatctctggcaaaatgaCcaggataaccacagtagagg	11	9	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77912563	A	A	77912563	3	1	114	1	0	0	0	0	1	0	0	0	17717	507	18	3	76	3	ZCCHC5	23	77912563	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	538895	77912563	77357997	368	108544											
ZCCHC5	203430	broad.mit.edu	37	chrX	77913582	77913582	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggaggcgccagggactcTggggctgctggggcctcctg	19	12	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77913582	C	C	77913582	2	2	114	1	0	0	0	0	0	0	0	1	17717	1567	55	5		5	ZCCHC5	23	77913582	Silent	SNP	T	TCGA-44-3396-01A-01D-1265-08	1019	77913582	77356978	369	108545											
TBX22	50945	broad.mit.edu	37	chrX	79282899	79282899	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttttcctgagAtggagtctcactctgttgcc	7	8	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79282899	G	G	79282899	1	3	114	0	1	0	0	0	0	0	0	0	15780	348	12	5		5	TBX22	23	79282899	Intron	SNP	A	TCGA-44-3396-01A-01D-1265-08	1369317	79282899	75987661	370	108546											
PCDH11X	27328	broad.mit.edu	37	chrX	91675527	91675527	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgaatgcctttctttatcCttcatcccaaggagggtttt	7	10	2	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91675527	T	T	91675527	1	4	114	0	1	0	0	0	0	0	0	0	11602	696	24	4		4	PCDH11X	23	91675527	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	12392628	91675527	63595033	371	108547											
NXF2B	728343	broad.mit.edu	37	chrX	101623636	101623636	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggtggtggtggtgacaggGaaagagggggccaggggaag	24	3	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101623636	A	A	101623636	1	1	114	0	1	0	0	0	0	0	0	0	10879	1189	41	4		4	NXF2B	23	101623636	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	9948109	101623636	53646924	372	108548											
MCART6	401612	broad.mit.edu	37	chrX	103349436	103349436	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagtagcccagtgacagccGcccccaaagcccataagaat	8	14	0	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103349436	A	A	103349436	3	1	114	1	0	0	0	0	1	0	0	0	9464	1086	38	4	422	4	MCART6	23	103349436	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	1725800	103349436	51921124	373	108549											
ESX1	80712	broad.mit.edu	37	chrX	103499633	103499633	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgggaccaatggctcgggcGagcgcttttctggcgccggg	17	12	1	0			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-10A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103499633	T	T	103499633	1	4	114	0	1	0	0	0	0	0	0	0	5305	1073	37	3		3	ESX1	23	103499633	5'Flank	SNP	G	TCGA-44-3396-01A-01D-1265-08	150197	103499633	51770927	374	108550											
CXorf41	139212	broad.mit.edu	37	chrX	106466059	106466059	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcctcaacaggttgttgCagtgaactagtggtaagcct	11	9	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106466059	T	T	106466059	2	4	114	1	0	0	0	0	0	0	0	1	4143	718	25	4		4	CXorf41	23	106466059	Silent	SNP	C	TCGA-44-3396-01A-01D-1265-08	2966426	106466059	48804501	375	108551											
DOCK11	139818	broad.mit.edu	37	chrX	117677468	117677468	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcaagattcctattttcTttcagtgtattaaaacctat	3	7	3	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117677468	C	C	117677468	1	2	114	0	1	0	0	0	0	0	0	0	4726	1624	56	5		5	DOCK11	23	117677468	Intron	SNP	T	TCGA-44-3396-01A-01D-1265-08	11211409	117677468	37593092	376	108552											
ZCCHC12	170261	broad.mit.edu	37	chrX	117960105	117960105	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccctcagagacagggccAgacctcaggatgaagtgctg	12	13	2	3			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117960105	G	G	117960105	3	3	114	1	0	0	0	0	1	0	0	0	17707	180	7	5	900	5	ZCCHC12	23	117960105	Missense_Mutation	SNP	A	TCGA-44-3396-01A-01D-1265-08	282637	117960105	37310455	377	108553											
GRIA3	2892	broad.mit.edu	37	chrX	122537344	122537344	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagtgcatcctcagagaatCggaccatagtagtgactacc	9	11	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122537344	G	G	122537344	3	3	114	1	0	0	0	0	1	0	0	0	6835	875	31	4	1301	4	GRIA3	23	122537344	Missense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	4577239	122537344	32733216	378	108554											
CDR1	1038	broad.mit.edu	37	chrX	139865753	139865753	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaaaatctagatcttcCagtcaatcagtgtcttccag	6	11	5	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139865753	T	T	139865753	4	4	114	1	0	0	0	0	0	1	0	0	3201	595	21	4	13	4	CDR1	23	139865753	Nonsense_Mutation	SNP	C	TCGA-44-3396-01A-01D-1265-08	17328409	139865753	15404807	379	108555											
MTM1	4534	broad.mit.edu	37	chrX	149839952	149839952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctcttagccttacgcgacGaatacataaagcggcttgag	10	10	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149839952	A	A	149839952	3	1	114	1	0	0	0	0	1	0	0	0	10031	1059	37	4	1750	4	MTM1	23	149839952	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	9974199	149839952	5430608	380	108556											
GPR50	9248	broad.mit.edu	37	chrX	150349062	150349063	+	Missense_Mutation	DNP	CC	AA	AA													gcaggaggcccgtaccctggCccgcgcccgtgcccatgctc							TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	150349063	AA	AA	150349062	3	1	114	1	0	0	0	0	1	0	0	0	6762	739	26	3	1013	3	GPR50	23	150349062	Missense_Mutation	DNP	CC	TCGA-44-3396-01A-01D-1265-08	509110	150349062	4921498	381	108557											
GABRE	2564	broad.mit.edu	37	chrX	151124166	151124166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgcctatgcgtatacctGtttctcctcttacctagaga	7	11	2	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151124166	T	T	151124166	1	4	114	0	1	0	0	0	0	0	0	0	6230	1392	48	3		3	GABRE	23	151124166	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	775104	151124166	4146394	382	108558											
ZNF275	10838	broad.mit.edu	37	chrX	152610044	152610044	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacccactccagaccctcaCctcttgaccctggcattact	4	19	2	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152610044	T	T	152610044	1	4	114	0	1	0	0	0	0	0	0	0	17936	522	18	4		4	ZNF275	23	152610044	Intron	SNP	C	TCGA-44-3396-01A-01D-1265-08	1485878	152610044	2660516	383	108559											
HAUS7	55559	broad.mit.edu	37	chrX	152721988	152721988	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttgttgaggaggggctGcatgtccaggggccacgggt	18	9	0	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152721988	C	C	152721988	3	2	114	1	0	0	0	0	1	0	0	0	7037	1328	46	4	528	4	HAUS7	23	152721988	Missense_Mutation	SNP	G	TCGA-44-3396-01A-01D-1265-08	111944	152721988	2548572	384	108560											
SRPK3	26576	broad.mit.edu	37	chrX	153043799	153043799	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggtgtcagaggcatcGgggctgcggggaagggggct	23	6	1	1			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153043799	A	A	153043799	1	1	114	0	1	0	0	0	0	0	0	0	15279	1131	39	4		4	SRPK3	23	153043799	5'Flank	SNP	G	TCGA-44-3396-01A-01D-1265-08	321811	153043799	2226761	385	108561											
HCFC1	3054	broad.mit.edu	37	chrX	153217163	153217163	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttggatggagccaggcctagGaagaaagaaggtgtcagcgg	17	6	1	2			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153217163	A	A	153217163	1	1	114	0	1	0	0	0	0	0	0	0	7057	1189	41	4		4	HCFC1	23	153217163	Intron	SNP	G	TCGA-44-3396-01A-01D-1265-08	173364	153217163	2053397	386	108562											
MTOR	2475	broad.mit.edu	37	chr1	11184600	11184600	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcattggccagaagggtgTtaaccaggccgaagagctgc	15	9	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11184600	C	C	11184600	3	2	115	1	0	0	0	0	1	0	0	0	10048	1725	60	5	1080	5	MTOR	1	11184600	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08		11184600	238066021	1	108563											
MTOR	2475	broad.mit.edu	37	chr1	11291433	11291433	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagtagggtacttcctgTagggctctactacatagcca	10	10	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11291433	C	C	11291433	3	2	115	1	0	0	0	0	1	0	0	0	10048	1638	57	5	5244	5	MTOR	1	11291433	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	106833	11291433	237959188	2	108564											
PRDM2	7799	broad.mit.edu	37	chr1	14105012	14105012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctccagaactagcaaCccctgcccctgcctgggagc	11	17	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14105012	A	A	14105012	3	1	115	1	0	0	0	0	1	0	0	0	12564	507	18	3	748	3	PRDM2	1	14105012	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2813579	14105012	235145609	3	108565											
CLCNKB	1188	broad.mit.edu	37	chr1	16362884	16362884	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaggggggcatgggtgggGacggcctcagtgcctgatgg	20	9	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16362884	T	T	16362884	1	4	115	0	1	0	0	0	0	0	0	0	3501	1189	41	3		3	CLCNKB	1	16362884	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	2257872	16362884	232887737	4	108566											
SDHB	6390	broad.mit.edu	37	chr1	17345264	17345264	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatttatttcttaaaatttTtattatacatgctgtattca	2	5	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17345264	G	G	17345264	1	3	115	0	1	0	0	0	0	0	0	0	14078	1856	64	5		5	SDHB	1	17345264	3'UTR	SNP	T	TCGA-44-3398-01A-01D-1105-08	982380	17345264	231905357	5	108567											
SDHB	6390	broad.mit.edu	37	chr1	17345334	17345334	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattagatataaattatgttCagctctgagctggttataaa	7	4	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17345334	G	G	17345334	1	3	115	0	1	0	0	0	0	0	0	0	14078	841	29	4		4	SDHB	1	17345334	3'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	70	17345334	231905287	6	108568											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17942588	17942588	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcctctctacctttgctcaGatgacccagctcatgaaggc	8	14	3	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17942588	C	C	17942588	5	2	115	1	0	0	0	0	0	0	1	0	897	956	33	4	756	4	ARHGEF10L	1	17942588	Splice_Site	SNP	G	TCGA-44-3398-01A-01D-1105-08	597254	17942588	231308033	7	108569											
EIF4G3	8672	broad.mit.edu	37	chr1	21268737	21268737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagtttcagatgtctggcCttcttgttctttcttctctc	7	10	6	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21268737	A	A	21268737	3	1	115	1	0	0	0	0	1	0	0	0	5080	681	24	2	4111	2	EIF4G3	1	21268737	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	3326149	21268737	227981884	8	108570											
AIM1L	55057	broad.mit.edu	37	chr1	26648835	26648835	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaggccccaggaggtcatCaggcattgttcctccccaca	10	15	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26648835	T	T	26648835	1	4	115	0	1	0	0	0	0	0	0	0	431	841	29	4		4	AIM1L	1	26648835	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	5380098	26648835	222601786	9	108571											
CSMD2	114784	broad.mit.edu	37	chr1	34128604	34128604	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagggccgggccactcagctCcttcagcagaaccccgctct	10	18	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34128604	G	G	34128604	3	3	115	1	0	0	0	0	1	0	0	0	3979	864	30	4	6618	4	CSMD2	1	34128604	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	7479769	34128604	215122017	10	108572											
EIF2C3	192669	broad.mit.edu	37	chr1	36505618	36505618	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatctcatcagactatggtGaaatcagatattgtgtttat	8	5	3	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36505618	A	A	36505618	1	1	115	0	1	0	0	0	0	0	0	0	5047	1305	45	4		4	EIF2C3	1	36505618	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	2377014	36505618	212745003	11	108573											
KDM4A	9682	broad.mit.edu	37	chr1	44133717	44133717	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcccttttgtcctggCtgcgtgagggagggatgtct	15	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44133717	G	G	44133717	1	3	115	0	1	0	0	0	0	0	0	0	8198	812	28	4		4	KDM4A	1	44133717	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	7628099	44133717	205116904	12	108574											
SLC6A9	6536	broad.mit.edu	37	chr1	44475796	44475796	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagggagaggtctggctcaGgagtgggcttggagggatct	20	6	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44475796	A	A	44475796	1	1	115	0	1	0	0	0	0	0	0	0	14805	1015	35	4		4	SLC6A9	1	44475796	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	342079	44475796	204774825	13	108575											
FAAH	2166	broad.mit.edu	37	chr1	46871349	46871349	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcagggggtgaaggggCcctcatcgggtctggaggct	17	11	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46871349	T	T	46871349	3	4	115	1	0	0	0	0	1	0	0	0	5399	739	26	4	686	4	FAAH	1	46871349	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2395553	46871349	202379272	14	108576											
SCP2	6342	broad.mit.edu	37	chr1	53461400	53461400	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactttgtggagtggatcccCaacaacatcaagacagctgt	9	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53461400	T	T	53461400	1	4	115	0	1	0	0	0	0	0	0	0	14047	609	21	4		4	SCP2	1	53461400	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	6590051	53461400	195789221	15	108577											
PDE4B	5142	broad.mit.edu	37	chr1	66723566	66723566	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaaggattgacttttttgTggagtttgaatccctaacat	9	5	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66723566	A	A	66723566	1	1	115	0	1	0	0	0	0	0	0	0	11734	1711	59	5		5	PDE4B	1	66723566	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	13262166	66723566	182527055	16	108578											
CLCA2	9635	broad.mit.edu	37	chr1	86890064	86890064	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggtataatggattgctcaTtgcaattaatcctcaggtac	9	7	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86890064	A	A	86890064	3	1	115	1	0	0	0	0	1	0	0	0	3489	1493	52	5	136	5	CLCA2	1	86890064	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	20166498	86890064	162360557	17	108579											
GTF2B	2959	broad.mit.edu	37	chr1	89319065	89319065	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaaacattaaccatcatttCcatcctacctcctttccact	1	16	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89319065	T	T	89319065	1	4	115	0	1	0	0	0	0	0	0	0	6920	870	30	4		4	GTF2B	1	89319065	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	2429001	89319065	159931556	18	108580											
NTNG1	22854	broad.mit.edu	37	chr1	107937895	107937895	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caagaagaattatcagggccGaccttggagtccaggctcct	11	11	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107937895	A	A	107937895	3	1	115	1	0	0	0	0	1	0	0	0	10799	1058	37	4	1017	4	NTNG1	1	107937895	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	18618830	107937895	141312726	19	108581											
AKNAD1	254268	broad.mit.edu	37	chr1	109358790	109358790	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atccttggtagcctagcgttGaactagtatttcagtcgatt	9	8	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109358790	C	C	109358790	1	2	115	0	1	0	0	0	0	0	0	0	464	1305	45	4		4	AKNAD1	1	109358790	3'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	1420895	109358790	139891831	20	108582											
TRIM33	51592	broad.mit.edu	37	chr1	114969875	114969875	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattagcagcagggacaggAtcacaccgtgctttcaaaat	9	11	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114969875	G	G	114969875	2	3	115	1	0	0	0	0	0	0	0	1	16631	330	12	5		5	TRIM33	1	114969875	Silent	SNP	A	TCGA-44-3398-01A-01D-1105-08	5611085	114969875	134280746	21	108583											
CASQ2	845	broad.mit.edu	37	chr1	116311165	116311165	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagtgagttctcttcatttGggaaaacttttgtttctcgt	8	7	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116311165	C	C	116311165	1	2	115	0	1	0	0	0	0	0	0	0	2707	1363	47	4		4	CASQ2	1	116311165	5'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	1341290	116311165	132939456	22	108584											
ENSA	2029	broad.mit.edu	37	chr1	150599975	150599975	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcttcatgaggaagtcggAgcctccaggcttttgtccta	10	11	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150599975	C	C	150599975	3	2	115	1	0	0	0	0	1	0	0	0	5178	304	11	5	417	5	ENSA	1	150599975	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	34288810	150599975	98650646	23	108585											
TDRKH	11022	broad.mit.edu	37	chr1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-													gggagaccgtggagagagagGgagagggagaccatggggag					rs140076465	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151742588	-	-	151742560	6	5	115	0	1	1	0	1	0	0	0	0	15859	1247	43	0		0	TDRKH	1	151742560	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	TCGA-44-3398-01A-01D-1105-08	1142585	151742560	97508061	24	108586											
HRNR	388697	broad.mit.edu	37	chr1	152185495	152185495	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttcatgatgaattcataGatgactttcctatttcttaa	4	7	4	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152185495	C	C	152185495	1	2	115	0	1	0	0	0	0	0	0	0	7426	957	33	4		4	HRNR	1	152185495	3'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	442935	152185495	97065126	25	108587											
C1orf189	388701	broad.mit.edu	37	chr1	154172905	154172905	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcacacagcagtagtgaatGagacttcaggttgccctgct	12	10	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154172905	A	A	154172905	1	1	115	0	1	0	0	0	0	0	0	0	2042	1305	45	4		4	C1orf189	1	154172905	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1987410	154172905	95077716	26	108588											
INSRR	3645	broad.mit.edu	37	chr1	156811139	156811139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggggccgggtgggggaggGttgtaggtagatcaacaatg	20	4	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156811139	T	T	156811139	1	4	115	0	1	0	0	0	0	0	0	0	7844	1276	44	3		3	INSRR	1	156811139	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	2638234	156811139	92439482	27	108589											
ADAMTS4	9507	broad.mit.edu	37	chr1	161163558	161163558	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaactggacaccacccccaCaggtccgagagcagtcaccc	9	17	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161163558	T	T	161163558	3	4	115	1	0	0	0	0	1	0	0	0	268	478	17	4	922	4	ADAMTS4	1	161163558	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4352419	161163558	88087063	28	108590											
FCGR3B	2215	broad.mit.edu	37	chr1	161595804	161595804	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggggacctcctggtgatCaccaggagggaaccacatat	12	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161595804	T	T	161595804	1	4	115	0	1	0	0	0	0	0	0	0	5842	841	29	4		4	FCGR3B	1	161595804	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	432246	161595804	87654817	29	108591											
OLFML2B	25903	broad.mit.edu	37	chr1	161969907	161969907	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgaccccaactcacgctgCtcttcaatgtcattctcttc	5	15	5	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161969907	T	T	161969907	2	4	115	1	0	0	0	0	0	0	0	1	10953	796	28	4		4	OLFML2B	1	161969907	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	374103	161969907	87280714	30	108592											
ILDR2	387597	broad.mit.edu	37	chr1	166944553	166944553	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaggaaagtgggaaatGgctggaacagaaggatcgct	17	4	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166944553	A	A	166944553	1	1	115	0	1	0	0	0	0	0	0	0	7780	1363	47	4		4	ILDR2	1	166944553	5'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	4974646	166944553	82306068	31	108593											
C1orf114	57821	broad.mit.edu	37	chr1	169388313	169388313	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcatttctaagacctgctCtcttttcttttgcaaccacg	4	14	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169388313	G	G	169388313	3	3	115	1	0	0	0	0	1	0	0	0	2007	922	32	4	385	4	C1orf114	1	169388313	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2443760	169388313	79862308	32	108594											
DARS2	55157	broad.mit.edu	37	chr1	173822600	173822600	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggtggtagatttcccactCttcctgcccaaggaggaaaa	11	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173822600	G	G	173822600	2	3	115	1	0	0	0	0	0	0	0	1	4275	900	32	4		4	DARS2	1	173822600	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	4434287	173822600	75428021	33	108595											
RABGAP1L	9910	broad.mit.edu	37	chr1	174781003	174781003	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accttctgcaggctgattttGaaggtgctttaaagttcttt	9	7	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174781003	A	A	174781003	3	1	115	1	0	0	0	0	1	0	0	0	13073	1291	45	4	2315	4	RABGAP1L	1	174781003	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	958403	174781003	74469618	34	108596											
TNN	63923	broad.mit.edu	37	chr1	175116129	175116129	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttacgtggagttgaaaatCcgccctcatggctacagcag	10	12	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175116129	G	G	175116129	3	3	115	1	0	0	0	0	1	0	0	0	16446	845	30	4	3892	4	TNN	1	175116129	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	335126	175116129	74134492	35	108597											
TNR	7143	broad.mit.edu	37	chr1	175372526	175372526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccgtccacgcagagcccCcgggagctgcagtctgttgg	13	16	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372526	A	A	175372526	2	1	115	1	0	0	0	0	0	0	0	1	16461	610	22	2		2	TNR	1	175372526	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	256397	175372526	73878095	36	108598											
FAM5B	57795	broad.mit.edu	37	chr1	177250215	177250215	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatcaccttggggaataggTggaagactttctttgagaca	11	7	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177250215	A	A	177250215	3	1	115	1	0	0	0	0	1	0	0	0	5644	1696	59	5	1929	5	FAM5B	1	177250215	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	1877689	177250215	72000406	37	108599											
KCNT2	343450	broad.mit.edu	37	chr1	196397126	196397126	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttactccttctatatttggtTgtataaataaaaatcctcca	3	8	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196397126	A	A	196397126	1	1	115	0	1	0	0	0	0	0	0	0	8162	1827	63	5		5	KCNT2	1	196397126	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	19146911	196397126	52853495	38	108600											
NFASC	23114	broad.mit.edu	37	chr1	204921287	204921287	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcattgaaaccacccgcttgCctctgggcctgatgataact	9	13	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204921287	G	G	204921287	1	3	115	0	1	0	0	0	0	0	0	0	10454	754	26	4		4	NFASC	1	204921287	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	8524161	204921287	44329334	39	108601											
RBBP5	5929	broad.mit.edu	37	chr1	205065903	205065903	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaggactgcctcttcttctCtgaactagccccttcatcca	6	15	4	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205065903	A	A	205065903	4	1	115	1	0	0	0	0	0	1	0	0	13210	922	32	3	325	3	RBBP5	1	205065903	Nonsense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	144616	205065903	44184718	40	108602											
AIDA	64853	broad.mit.edu	37	chr1	222843271	222843271	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttgatgtagatgaagataAagtggtttcttggtcaataa	11	2	2	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222843271	T	T	222843271	2	4	115	1	0	0	0	0	0	0	0	1	423	1	1	5		5	AIDA	1	222843271	Silent	SNP	A	TCGA-44-3398-01A-01D-1105-08	17777368	222843271	26407350	41	108603											
ARF1	375	broad.mit.edu	37	chr1	228285492	228285493	+	Intron	INS	-	G	G													ggtaggggttactggaggctINSggtggggcccctttctctgt					rs147721417	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228285493	G	G	228285492	6	5	115	0	1	1	1	0	0	0	0	0	846	1595	55	0		0	ARF1	1	228285492	Intron	INS	-	TCGA-44-3398-01A-01D-1105-08	5442221	228285492	20965129	42	108604											
COLEC11	78989	broad.mit.edu	37	chr2	3673510	3673510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggattataggcatgagccGccatacctggcagactttgc	12	11	0	2	rs111455909	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3673510	T	T	3673510	1	4	115	0	1	0	0	0	0	0	0	0	3743	1102	38	3		3	COLEC11	2	3673510	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08		3673510	239525863	43	108605											
CPSF3	51692	broad.mit.edu	37	chr2	9570743	9570743	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttcttccttctacacataCctactcttggtttttctgaa	3	12	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9570743	G	G	9570743	1	3	115	0	1	0	0	0	0	0	0	0	3858	522	18	4		4	CPSF3	2	9570743	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	5897233	9570743	233628630	44	108606											
ASXL2	55252	broad.mit.edu	37	chr2	25967042	25967042	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtggggccctttccagtttCactgactctgtctgagcctg	11	12	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25967042	T	T	25967042	3	4	115	1	0	0	0	0	1	0	0	0	1071	835	29	4	2147	4	ASXL2	2	25967042	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	16396299	25967042	217232331	45	108607											
MPV17	4358	broad.mit.edu	37	chr2	27545298	27545298	+	Intron	DEL	C	-	-													tgccctggtcccactcaagtCctagagggacactcaccagc							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27545298	-	-	27545298	6	5	115	0	1	1	0	1	0	0	0	0	9839	870	30	0		0	MPV17	2	27545298	Intron	DEL	C	TCGA-44-3398-01A-01D-1105-08	1578256	27545298	215654075	46	108608											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27910906	27910910	+	Intron	DEL	TTCAT	-	-													aggcaagtagtacggcagccTtcattgctgctctgcacaca					rs76173523		TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27910910	-	-	27910906	6	5	115	0	1	1	0	1	0	0	0	0	14767	1624	56	0		0	SLC4A1AP	2	27910906	Intron	DEL	TTCAT	TCGA-44-3398-01A-01D-1105-08	365608	27910906	215288467	47	108609											
GALNT14	79623	broad.mit.edu	37	chr2	31147698	31147698	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctctcaacactgggggcAacggggttgtggacagacac	14	11	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31147698	T	T	31147698	1	4	115	0	1	0	0	0	0	0	0	0	6274	145	5	5		5	GALNT14	2	31147698	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	3236792	31147698	212051675	48	108610											
OXER1	165140	broad.mit.edu	37	chr2	42990262	42990262	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctagagaagcagtagagcAcggggtccaggacactgttg	16	8	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42990262	T	T	42990262	3	4	115	1	0	0	0	0	1	0	0	0	11425	159	6	5	217	5	OXER1	2	42990262	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	11842564	42990262	200209111	49	108611											
USP34	9736	broad.mit.edu	37	chr2	61633065	61633068	+	Frame_Shift_Del	DEL	CTCT	-	-													tctgtacttccttcattacaCtctctatctatattcagtgg							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61633068	-	-	61633065	7	5	115	1	0	1	0	1	0	0	0	0	17192	564	20	0	10622	0	USP34	2	61633065	Frame_Shift_Del	DEL	CTCT	TCGA-44-3398-01A-01D-1105-08	18642803	61633065	181566308	50	108612											
AAK1	22848	broad.mit.edu	37	chr2	69734606	69734606	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gttcttcagctgtgagtttgGagaaattatcgtcatcaaag	10	6	4	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69734606	C	C	69734606	3	2	115	1	0	0	0	0	1	0	0	0	16	1174	41	4	806	4	AAK1	2	69734606	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	8101541	69734606	173464767	51	108613											
DYSF	8291	broad.mit.edu	37	chr2	71797971	71797971	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagacacatgcatgtgtgcAcacagcatgcacagacacct	8	13	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71797971	C	C	71797971	1	2	115	0	1	0	0	0	0	0	0	0	4899	174	6	5		5	DYSF	2	71797971	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	2063365	71797971	171401402	52	108614											
REG3G	130120	broad.mit.edu	37	chr2	79254064	79254064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaatgaggatgaacacGcttatctttcacacagtcct	9	9	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79254064	T	T	79254064	1	4	115	0	1	0	0	0	0	0	0	0	13321	1102	38	3		3	REG3G	2	79254064	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	7456093	79254064	163945309	53	108615											
POLR1A	25885	broad.mit.edu	37	chr2	86257402	86257402	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcttattgttggttgtttCattcaggaggcaccgagtga	12	6	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86257402	T	T	86257402	3	4	115	1	0	0	0	0	1	0	0	0	12304	835	29	4	482	4	POLR1A	2	86257402	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	7003338	86257402	156941971	54	108616											
ZNF2	7549	broad.mit.edu	37	chr2	95847781	95847782	+	Frame_Shift_Ins	INS	-	T	T													ccctttgaatgcactgtgtgINStgggaaagttttcagttcaa							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95847782	T	T	95847781	7	5	115	1	0	1	1	0	0	0	0	0	17886	1377	48	0	1222	0	ZNF2	2	95847781	Frame_Shift_Ins	INS	-	TCGA-44-3398-01A-01D-1105-08	9590379	95847781	147351592	55	108617											
TRIM43	129868	broad.mit.edu	37	chr2	96259675	96259675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatacttctttagaaagaaaGgatattattcgatcacgatc	6	6	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96259675	A	A	96259675	1	1	115	0	1	0	0	0	0	0	0	0	16642	1015	35	4		4	TRIM43	2	96259675	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	411894	96259675	146939698	56	108618											
TBC1D8	11138	broad.mit.edu	37	chr2	101650223	101650223	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagatccgtcaccgcatctGagttttaaaagcaatgtttc	7	10	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101650223	C	C	101650223	1	2	115	0	1	0	0	0	0	0	0	0	15747	1305	45	4		4	TBC1D8	2	101650223	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	5390548	101650223	141549150	57	108619											
POTEF	728378	broad.mit.edu	37	chr2	130832530	130832530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtgtacagggacagcaCagcctggatggccacgtaca	14	10	0	1	rs2599795		TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130832530	A	A	130832530	3	1	115	1	0	0	0	0	1	0	0	0	12361	478	17	3	716	3	POTEF	2	130832530	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	29182307	130832530	112366843	58	108620											
SMPD4	55627	broad.mit.edu	37	chr2	130912971	130912971	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgacaagctgtcacagatGacagctcagggggccacggg	16	10	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130912971	C	C	130912971	1	2	115	0	1	0	0	0	0	0	0	0	14921	1305	45	4		4	SMPD4	2	130912971	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	80441	130912971	112286402	59	108621											
CFC1B	653275	broad.mit.edu	37	chr2	131356185	131356185	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcagactgagatgacgccCcggattttgtgggcagcgct	14	12	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131356185	A	A	131356185	1	1	115	0	1	0	0	0	0	0	0	0	3310	638	22	2		2	CFC1B	2	131356185	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	443214	131356185	111843188	60	108622											
LCT	3938	broad.mit.edu	37	chr2	136552261	136552261	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcatagttgaggttgtaggcGaggacagtggtgtagtgatt	17	3	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136552261	C	C	136552261	2	2	115	1	0	0	0	0	0	0	0	1	8765	1045	37	4		4	LCT	2	136552261	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	5196076	136552261	106647112	61	108623											
LRP1B	53353	broad.mit.edu	37	chr2	141260574	141260575	+	Missense_Mutation	DNP	GG	TT	TT													taaaggtgcttcatcagaatGgtcaggacagtcaaagtctc							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	141260575	TT	TT	141260574	3	4	115	1	0	0	0	0	1	0	0	0	9042	1348	47	2	5331	2	LRP1B	2	141260574	Missense_Mutation	DNP	GG	TCGA-44-3398-01A-01D-1105-08	4708313	141260574	101938799	62	108624											
KCNJ3	3760	broad.mit.edu	37	chr2	155566153	155566153	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagttccttccccttgaCcaacttgaactggatgtagg	11	10	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155566153	T	T	155566153	2	4	115	1	0	0	0	0	0	0	0	1	8122	506	18	4		4	KCNJ3	2	155566153	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	14305579	155566153	87633220	63	108625											
OSBPL6	114880	broad.mit.edu	37	chr2	179257093	179257093	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagtcagcttcttccagttCcataaaccttctgcctctca	4	14	4	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179257093	T	T	179257093	1	4	115	0	1	0	0	0	0	0	0	0	11375	870	30	4		4	OSBPL6	2	179257093	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	23690940	179257093	63942280	64	108626											
TTN	7273	broad.mit.edu	37	chr2	179569987	179569987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtgattccatacatgcGggcatatttttcatattctt	7	8	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179569987	T	T	179569987	3	4	115	1	0	0	0	0	1	0	0	0	16861	1116	39	1	75051	1	TTN	2	179569987	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	312894	179569987	63629386	65	108627											
ZNF804A	91752	broad.mit.edu	37	chr2	185802747	185802747	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagaacaaacaaaccaatTaagaaacaaactgtctttcc	3	11	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185802747	G	G	185802747	4	3	115	1	0	0	0	0	0	1	0	0	18299	1764	61	5	2638	5	ZNF804A	2	185802747	Nonsense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	6232760	185802747	57396626	66	108628											
ERBB4	2066	broad.mit.edu	37	chr2	212530205	212530205	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtacagttgtcaggaccctGaaatgtgaaaacgaaaaaaa	9	6	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212530205	A	A	212530205	1	1	115	0	1	0	0	0	0	0	0	0	5251	1305	45	4		4	ERBB4	2	212530205	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	26727458	212530205	30669168	67	108629											
PTPRN	5798	broad.mit.edu	37	chr2	220162896	220162896	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagctgctcctcaccccggTcccatgccacaccccctgtt	7	20	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220162896	C	C	220162896	1	2	115	0	1	0	0	0	0	0	0	0	12915	1682	58	5		5	PTPRN	2	220162896	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	7632691	220162896	23036477	68	108630											
PTPRN	5798	broad.mit.edu	37	chr2	220166239	220166239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccaggctactccaagtgGtctcgaggcagggcaagagg	14	11	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220166239	T	T	220166239	1	4	115	0	1	0	0	0	0	0	0	0	12915	1276	44	3		3	PTPRN	2	220166239	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	3343	220166239	23033134	69	108631											
PAX3	5077	broad.mit.edu	37	chr2	223085764	223085764	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtttatctagagatattcTgatacatcatagaacaaact	5	7	3	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223085764	A	A	223085764	1	1	115	0	1	0	0	0	0	0	0	0	11574	1595	55	5		5	PAX3	2	223085764	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	2919525	223085764	20113609	70	108632											
INPP5D	3635	broad.mit.edu	37	chr2	234072375	234072375	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacgccccccctcccaagaaGatcacgtcctggtttctctc	6	18	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234072375	A	A	234072375	2	1	115	1	0	0	0	0	0	0	0	1	7826	933	33	4		4	INPP5D	2	234072375	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	10986611	234072375	9126998	71	108633											
ING5	84289	broad.mit.edu	37	chr2	242648852	242648852	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctctactcctgcctctcAtgcaacaaaatgtaaaaact	4	13	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242648852	T	T	242648852	1	4	115	0	1	0	0	0	0	0	0	0	7809	232	8	5		5	ING5	2	242648852	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	8576477	242648852	550521	72	108634											
D2HGDH	728294	broad.mit.edu	37	chr2	242681862	242681862	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcccaggcactgccacgaGaggaacctggccgtgaaccc	11	16	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242681862	C	C	242681862	3	2	115	1	0	0	0	0	1	0	0	0	4246	933	33	4	373	4	D2HGDH	2	242681862	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	33010	242681862	517511	73	108635											
SLC4A7	9497	broad.mit.edu	37	chr3	27462219	27462219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatgagagtggctattgatCgtccaatttcatggtactgt	10	7	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462219	A	A	27462219	3	1	115	1	0	0	0	0	1	0	0	0	14772	884	31	3	2251	3	SLC4A7	3	27462219	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08		27462219	170560211	74	108636											
SUSD5	26032	broad.mit.edu	37	chr3	33216515	33216515	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccatttccaagccggtgCggccctgcaggatggtgtgt	13	14	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33216515	T	T	33216515	3	4	115	1	0	0	0	0	1	0	0	0	15529	768	27	4	1436	4	SUSD5	3	33216515	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	5754296	33216515	164805915	75	108637											
ACVR2B	93	broad.mit.edu	37	chr3	38524628	38524628	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgccctatgctgcttaGggcctggcccagctttgtgt	12	12	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38524628	T	T	38524628	5	4	115	1	0	0	0	0	0	0	1	0	224	1014	35	2	1386	2	ACVR2B	3	38524628	Splice_Site	SNP	G	TCGA-44-3398-01A-01D-1105-08	5308113	38524628	159497802	76	108638											
VIPR1	7433	broad.mit.edu	37	chr3	42569343	42569343	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggctcgtatttcaggatGggatcccctttgaggcgggg	17	8	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42569343	A	A	42569343	1	1	115	0	1	0	0	0	0	0	0	0	17296	1363	47	4		4	VIPR1	3	42569343	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	4044715	42569343	155453087	77	108639											
ANO10	55129	broad.mit.edu	37	chr3	43474152	43474152	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attccagtctggctagtttcAtctggatatgccgtggctta	10	9	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43474152	T	T	43474152	3	4	115	1	0	0	0	0	1	0	0	0	696	217	8	5	125	5	ANO10	3	43474152	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	904809	43474152	154548278	78	108640											
TRAIP	10293	broad.mit.edu	37	chr3	49879316	49879316	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgctgactgtcccacacccAtgtctcggatcatctcctcc	6	19	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49879316	G	G	49879316	3	3	115	1	0	0	0	0	1	0	0	0	16572	217	8	5	885	5	TRAIP	3	49879316	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	6405164	49879316	148143114	79	108641											
PHLDB2	90102	broad.mit.edu	37	chr3	111671462	111671462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaacagcataaagaagGcctctatctgagtgatactt	8	7	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111671462	T	T	111671462	3	4	115	1	0	0	0	0	1	0	0	0	11947	1203	42	3	2798	3	PHLDB2	3	111671462	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	61792146	111671462	86350968	80	108642											
DRD3	1814	broad.mit.edu	37	chr3	113878572	113878572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacttccccagcttttgGgccacctggaaggggaattg	11	14	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113878572	T	T	113878572	1	4	115	0	1	0	0	0	0	0	0	0	4798	1247	43	2		2	DRD3	3	113878572	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	2207110	113878572	84143858	81	108643											
C3orf30	152405	broad.mit.edu	37	chr3	118870019	118870019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcaaatataacctgacCacataattttgctcagaacc	4	11	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118870019	A	A	118870019	1	1	115	0	1	0	0	0	0	0	0	0	2242	609	21	2		2	C3orf30	3	118870019	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	4991447	118870019	79152411	82	108644											
WDR5B	54554	broad.mit.edu	37	chr3	122134359	122134359	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgtgctttggcgtctcttGactccttggttgccatggct	11	11	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122134359	A	A	122134359	3	1	115	1	0	0	0	0	1	0	0	0	17436	1294	45	4	979	4	WDR5B	3	122134359	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	3264340	122134359	75888071	83	108645											
KALRN	8997	broad.mit.edu	37	chr3	124174058	124174058	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaagcttctgattcagcTggccgatagctttgtggaaa	13	7	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124174058	A	A	124174058	3	1	115	1	0	0	0	0	1	0	0	0	8045	1580	55	5	3667	5	KALRN	3	124174058	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	2039699	124174058	73848372	84	108646											
ALG1L	200810	broad.mit.edu	37	chr3	125651382	125651382	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaccctatagcagagagcTgcagtgaagattaaggagac	12	7	0	5			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125651382	C	C	125651382	1	2	115	0	1	0	0	0	0	0	0	0	517	1595	55	5		5	ALG1L	3	125651382	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	1477324	125651382	72371048	85	108647											
SRPRB	58477	broad.mit.edu	37	chr3	133524652	133524652	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctgcgcagagtgcagggCcacgtcgcttttgctgtacc	13	14	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133524652	T	T	133524652	1	4	115	0	1	0	0	0	0	0	0	0	15281	754	26	4		4	SRPRB	3	133524652	5'Flank	SNP	C	TCGA-44-3398-01A-01D-1105-08	7873270	133524652	64497778	86	108648											
DZIP1L	199221	broad.mit.edu	37	chr3	137799537	137799537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagaaaagtacagaaccCcagctgagtatgagccagaa	10	8	0	6			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137799537	A	A	137799537	1	1	115	0	1	0	0	0	0	0	0	0	4904	638	22	2		2	DZIP1L	3	137799537	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	4274885	137799537	60222893	87	108649											
CP	1356	broad.mit.edu	37	chr3	148894324	148894324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttaaaaaatcgagctcGtttctgtgtttaatacaaat	6	5	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148894324	T	T	148894324	1	4	115	0	1	0	0	0	0	0	0	0	3819	1160	40	3		3	CP	3	148894324	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	11094787	148894324	49128106	88	108650											
SGEF	26084	broad.mit.edu	37	chr3	153909105	153909105	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatccatcctttaaggaagtAttgtcaaggattgagtccca	8	8	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153909105	G	G	153909105	2	3	115	1	0	0	0	0	0	0	0	1	14318	436	16	5		5	SGEF	3	153909105	Silent	SNP	A	TCGA-44-3398-01A-01D-1105-08	5014781	153909105	44113325	89	108651											
BCHE	590	broad.mit.edu	37	chr3	165547424	165547424	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaattcaatttcatagccAtgcatcactcccatccattc	2	14	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165547424	T	T	165547424	3	4	115	1	0	0	0	0	1	0	0	0	1363	214	8	5	422	5	BCHE	3	165547424	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	11638319	165547424	32475006	90	108652											
TTC14	151613	broad.mit.edu	37	chr3	180322027	180322027	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacaggctctttgtcccttAagagatgtgccttctcacag	8	11	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180322027	G	G	180322027	2	3	115	1	0	0	0	0	0	0	0	1	16807	359	13	5		5	TTC14	3	180322027	Silent	SNP	A	TCGA-44-3398-01A-01D-1105-08	14774603	180322027	17700403	91	108653											
HAUS3	79441	broad.mit.edu	37	chr4	2233854	2233854	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgatttagcttattcagttGagattcaactttatgaaact	6	5	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2233854	C	C	2233854	3	2	115	1	0	0	0	0	1	0	0	0	7033	1299	45	4	203	4	HAUS3	4	2233854	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08		2233854	188920422	92	108654											
MAN2B2	23324	broad.mit.edu	37	chr4	6616095	6616095	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggaaaggtgaggcaggtgCcctggcgtctcagacctgct	15	12	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6616095	T	T	6616095	1	4	115	0	1	0	0	0	0	0	0	0	9309	754	26	4		4	MAN2B2	4	6616095	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	4382241	6616095	184538181	93	108655											
RBM47	54502	broad.mit.edu	37	chr4	40434729	40434729	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcggcggctgcggccgcgGctgcggcggcagcagcactg	19	15	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40434729	A	A	40434729	3	1	115	1	0	0	0	0	1	0	0	0	13249	1203	42	4	308	4	RBM47	4	40434729	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	33818634	40434729	150719547	94	108656											
APBB2	323	broad.mit.edu	37	chr4	40895200	40895200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcggagcccctcagtacCatgtgtcactgagctgtggg	12	13	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40895200	A	A	40895200	1	1	115	0	1	0	0	0	0	0	0	0	763	609	21	2		2	APBB2	4	40895200	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	460471	40895200	150259076	95	108657											
GABRB1	2560	broad.mit.edu	37	chr4	47033584	47033584	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcgcatgcgcaggtccAttcgggaattactgcccagc	11	14	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47033584	G	G	47033584	1	3	115	0	1	0	0	0	0	0	0	0	6226	232	8	5		5	GABRB1	4	47033584	5'UTR	SNP	A	TCGA-44-3398-01A-01D-1105-08	6138384	47033584	144120692	96	108658											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68708418	68708418	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctctcaaccttgcaacatGagacatgttaatgaggagta	8	9	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68708418	A	A	68708418	1	1	115	0	1	0	0	0	0	0	0	0	16364	1305	45	4		4	TMPRSS11D	4	68708418	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	21674834	68708418	122445858	97	108659											
C4orf40	401137	broad.mit.edu	37	chr4	71020089	71020089	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaatattcatagggtcaatCaaaatgaagcttctcctttg	6	7	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71020089	T	T	71020089	1	4	115	0	1	0	0	0	0	0	0	0	2292	841	29	4		4	C4orf40	4	71020089	5'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	2311671	71020089	120134187	98	108660											
ADH1C	126	broad.mit.edu	37	chr4	100267994	100267994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcctgcctgaagtcataCatgcttgagtcaggcaagca	10	11	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100267994	A	A	100267994	1	1	115	0	1	0	0	0	0	0	0	0	309	493	17	3		3	ADH1C	4	100267994	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	29247905	100267994	90886282	99	108661											
COL25A1	84570	broad.mit.edu	37	chr4	109841756	109841756	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcccggaggccctagaGgaccctaaaaaagaaaaacg	10	10	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109841756	A	A	109841756	3	1	115	1	0	0	0	0	1	0	0	0	3716	1000	35	4	1443	4	COL25A1	4	109841756	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	9573762	109841756	81312520	100	108662											
SEC24D	9871	broad.mit.edu	37	chr4	119745815	119745815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgagctccattctgacCaaactgatggggtccaggag	13	10	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119745815	A	A	119745815	3	1	115	1	0	0	0	0	1	0	0	0	14110	594	21	2	2974	2	SEC24D	4	119745815	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	9904059	119745815	71408461	101	108663											
TRPC3	7222	broad.mit.edu	37	chr4	122853827	122853827	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccgcgaagccagggtggtTgaggatggcctctacgatgc	17	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122853827	A	A	122853827	3	1	115	1	0	0	0	0	1	0	0	0	16704	1812	63	5	2223	5	TRPC3	4	122853827	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	3108012	122853827	68300449	102	108664											
MAP9	79884	broad.mit.edu	37	chr4	156281387	156281387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatagtagtggatcaactGttctgtcatcatccataatc	7	8	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156281387	T	T	156281387	3	4	115	1	0	0	0	0	1	0	0	0	9362	1377	48	3	992	3	MAP9	4	156281387	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	33427560	156281387	34872889	103	108665											
PALLD	23022	broad.mit.edu	37	chr4	169432647	169432647	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacagagtgcatgaagacCgttcaaatatgtcagggacc	11	9	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169432647	T	T	169432647	1	4	115	0	1	0	0	0	0	0	0	0	11501	667	23	4		4	PALLD	4	169432647	5'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	13151260	169432647	21721629	104	108666											
NEK1	4750	broad.mit.edu	37	chr4	170321765	170321765	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatggttaaagacactatcGcattcacattcactagcaat	5	9	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170321765	A	A	170321765	2	1	115	1	0	0	0	0	0	0	0	1	10416	1079	38	4		4	NEK1	4	170321765	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	889118	170321765	20832511	105	108667											
SEMA5A	9037	broad.mit.edu	37	chr5	9066574	9066574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgtcgctagaacagtacCgcatttcgattctctgtctt	8	12	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9066574	A	A	9066574	3	1	115	1	0	0	0	0	1	0	0	0	14150	652	23	1	994	1	SEMA5A	5	9066574	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08		9066574	171848686	106	108668											
CDH10	1008	broad.mit.edu	37	chr5	24487847	24487847	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgagggccccattctcggagGtaatcgtagttttggtctcc	12	11	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24487847	C	C	24487847	4	2	115	1	0	0	0	0	0	1	0	0	3126	1256	44	4	78	4	CDH10	5	24487847	Nonsense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	15421273	24487847	156427413	107	108669											
C7	730	broad.mit.edu	37	chr5	40931182	40931182	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgcctcctctccagtcAactgccagtgggacttctat	9	14	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40931182	G	G	40931182	3	3	115	1	0	0	0	0	1	0	0	0	2400	130	5	5	89	5	C7	5	40931182	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	16443335	40931182	139984078	108	108670											
ITGA1	3672	broad.mit.edu	37	chr5	52206136	52206136	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgctgtaaaagacctcAatcttgatggatttaatgac	8	7	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52206136	C	C	52206136	3	2	115	1	0	0	0	0	1	0	0	0	7942	130	5	5	1798	5	ITGA1	5	52206136	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	11274954	52206136	128709124	109	108671											
ITGA2	3673	broad.mit.edu	37	chr5	52371076	52371076	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccaagaagaaaacaaggctGataatttggtcaacctcaaa	8	8	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52371076	A	A	52371076	3	1	115	1	0	0	0	0	1	0	0	0	7945	1290	45	4	2857	4	ITGA2	5	52371076	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	164940	52371076	128544184	110	108672											
CCDC125	202243	broad.mit.edu	37	chr5	68630152	68630152	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaggtgctgaaacagtgccGacttgcaaacggattggcct	13	9	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68630152	A	A	68630152	1	1	115	0	1	0	0	0	0	0	0	0	2787	1073	37	4		4	CCDC125	5	68630152	5'Flank	SNP	G	TCGA-44-3398-01A-01D-1105-08	16259076	68630152	112285108	111	108673											
BDP1	55814	broad.mit.edu	37	chr5	70763332	70763332	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaactaattttcatttAaaaatgtgtaagttctctat	5	4	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70763332	G	G	70763332	1	3	115	0	1	0	0	0	0	0	0	0	1400	377	13	5		5	BDP1	5	70763332	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	2133180	70763332	110151928	112	108674											
RGNEF	64283	broad.mit.edu	37	chr5	73163757	73163757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcacccttcttcctccGtgcctgttggattgccgact	8	16	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73163757	T	T	73163757	3	4	115	1	0	0	0	0	1	0	0	0	13391	1145	40	3	2279	3	RGNEF	5	73163757	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	2400425	73163757	107751503	113	108675											
GPR98	84059	broad.mit.edu	37	chr5	89943510	89943510	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtagacagcagagcatatCcatatttgttaatgaagatg	9	5	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89943510	T	T	89943510	3	4	115	1	0	0	0	0	1	0	0	0	6787	855	30	4	3284	4	GPR98	5	89943510	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	16779753	89943510	90971750	114	108676											
AQPEP	206338	broad.mit.edu	37	chr5	115329519	115329519	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcttattttgagtttgaaGtaattaactactttaatcct	4	6	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115329519	A	A	115329519	3	1	115	1	0	0	0	0	1	0	0	0	836	1029	36	4	1364	4	AQPEP	5	115329519	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	25386009	115329519	65585741	115	108677											
FBN2	2201	broad.mit.edu	37	chr5	127614468	127614468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacttagtgacgagattgcGactactggatgccatttgac	11	8	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127614468	T	T	127614468	3	4	115	1	0	0	0	0	1	0	0	0	5760	1058	37	3	1570	3	FBN2	5	127614468	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	12284949	127614468	53300792	116	108678											
PCDHA12	56137	broad.mit.edu	37	chr5	140255890	140255890	+	Missense_Mutation	SNP	C	T	T													aggacttaatggagaaatttCctatgggatcaaaatgattt							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140255890	T	T	140255890	3	4	115	1	0	0	0	0	1	0	0	0	11616	855	30	4	835	4	PCDHA12	5	140255890	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	12641422	140255890	40659370	117	108679	469	2									
PCDHA12	56137	broad.mit.edu	37	chr5	140255900	140255900	+	Silent	SNP	C	T	T													ggagaaatttcctatgggatCaaaatgattttgccagtgag							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140255900	T	T	140255900	2	4	115	1	0	0	0	0	0	0	0	1	11616	816	29	4		4	PCDHA12	5	140255900	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	10	140255900	40659360	118	108680	469	2									
PCDHGB2	56103	broad.mit.edu	37	chr5	140741283	140741283	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcatgagcagctgcgcgcCttcgagctcacactgcaggc	12	14	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140741283	T	T	140741283	2	4	115	1	0	0	0	0	0	0	0	1	11657	668	24	4		4	PCDHGB2	5	140741283	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	485383	140741283	40173977	119	108681											
ABLIM3	22885	broad.mit.edu	37	chr5	148617109	148617109	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccccgacctcatttcctaTgagcctcattccagatacat	5	16	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148617109	A	A	148617109	4	1	115	1	0	0	0	0	0	1	0	0	96	1471	51	5	1025	5	ABLIM3	5	148617109	Nonsense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	7875826	148617109	32298151	120	108682											
SLC6A7	6534	broad.mit.edu	37	chr5	149578957	149578957	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgggaggccccggaggcctGaggggctggatggggtgaag	22	8	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149578957	C	C	149578957	1	2	115	0	1	0	0	0	0	0	0	0	14803	1305	45	4		4	SLC6A7	5	149578957	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	961848	149578957	31336303	121	108683											
KIF4B	285643	broad.mit.edu	37	chr5	154397003	154397003	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccttttgacctcccagagtCgaaacatggagcaacagaat	8	12	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154397003	T	T	154397003	3	4	115	1	0	0	0	0	1	0	0	0	8374	893	31	4	3586	4	KIF4B	5	154397003	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4818046	154397003	26518257	122	108684											
TIMD4	91937	broad.mit.edu	37	chr5	156390073	156390073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttctgcttcactgaggcCcaaaccagtgcatggaaatc	9	12	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156390073	A	A	156390073	1	1	115	0	1	0	0	0	0	0	0	0	16026	638	22	2		2	TIMD4	5	156390073	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1993070	156390073	24525187	123	108685											
CCNG1	900	broad.mit.edu	37	chr5	162866386	162866386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gactaattgagtctgcacacGataatggcctcagaatgact	9	9	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162866386	A	A	162866386	3	1	115	1	0	0	0	0	1	0	0	0	2953	1058	37	4	126	4	CCNG1	5	162866386	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	6476313	162866386	18048874	124	108686											
DOCK2	1794	broad.mit.edu	37	chr5	169111325	169111325	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgagctcttcatgtctctCtacgaccccaacaagcaaac	6	15	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169111325	G	G	169111325	2	3	115	1	0	0	0	0	0	0	0	1	4727	900	32	4		4	DOCK2	5	169111325	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	6244939	169111325	11803935	125	108687											
FGF18	8817	broad.mit.edu	37	chr5	170847398	170847398	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccactgaccgcttctccatCtgtttcccgcaggtgtttac	7	16	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170847398	G	G	170847398	1	3	115	0	1	0	0	0	0	0	0	0	5903	928	32	4		4	FGF18	5	170847398	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1736073	170847398	10067862	126	108688											
FGFR4	2264	broad.mit.edu	37	chr5	176524501	176524501	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcccatcccgggcgctgcaGaggctgaccagctccgttcc	12	17	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176524501	A	A	176524501	1	1	115	0	1	0	0	0	0	0	0	0	5925	957	33	4		4	FGFR4	5	176524501	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	5677103	176524501	4390759	127	108689											
GCM2	9247	broad.mit.edu	37	chr6	10874367	10874367	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggctcgtggggaatagccAcagtgggtctgatggcccgg	17	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10874367	T	T	10874367	3	4	115	1	0	0	0	0	1	0	0	0	6360	159	6	5	142	5	GCM2	6	10874367	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08		10874367	160240700	128	108690											
TBC1D7	51256	broad.mit.edu	37	chr6	13307827	13307827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgtcttcgaaagacctaCttgcctctgtaaactggatt	7	9	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13307827	A	A	13307827	1	1	115	0	1	0	0	0	0	0	0	0	15746	580	20	3		3	TBC1D7	6	13307827	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	2433460	13307827	157807240	129	108691											
GPLD1	2822	broad.mit.edu	37	chr6	24462987	24462987	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttttgctggccgccacaTgcaatgaacagagggttctc	12	10	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24462987	C	C	24462987	2	2	115	1	0	0	0	0	0	0	0	1	6679	1451	51	5		5	GPLD1	6	24462987	Silent	SNP	T	TCGA-44-3398-01A-01D-1105-08	11155160	24462987	146652080	130	108692											
ZFP57	346171	broad.mit.edu	37	chr6	29644805	29644805	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgtggtgtctctttcTagctttatccactcctggcc	7	13	4	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29644805	C	C	29644805	1	2	115	0	1	0	0	0	0	0	0	0	17777	1537	53	5		5	ZFP57	6	29644805	5'UTR	SNP	T	TCGA-44-3398-01A-01D-1105-08	5181818	29644805	141470262	131	108693											
DHX16	8449	broad.mit.edu	37	chr6	30630530	30630530	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtagccaacctggtcaaggGaaccattagcaaccaagtgt	10	10	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30630530	A	A	30630530	1	1	115	0	1	0	0	0	0	0	0	0	4542	1189	41	4		4	DHX16	6	30630530	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	985725	30630530	140484537	132	108694											
HLA-B	3106	broad.mit.edu	37	chr6	31323207	31323207	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acttctggaaggttctatctCctgctggtctggtctccaca	9	12	5	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31323207	G	G	31323207	3	3	115	1	0	0	0	0	1	0	0	0	7263	855	30	4	322	4	HLA-B	6	31323207	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	692677	31323207	139791860	133	108695											
LST1	7940	broad.mit.edu	37	chr6	31555782	31555782	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggggagggcaagagagaTcctgagtgggtgagtgggga	22	3	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31555782	C	C	31555782	1	2	115	0	1	0	0	0	0	0	0	0	9154	1450	50	5		5	LST1	6	31555782	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	232575	31555782	139559285	134	108696											
HLA-DOA	3111	broad.mit.edu	37	chr6	32975726	32975726	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagagtgatgggagcctagGaactgggaggaagtttctct	15	7	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32975726	A	A	32975726	1	1	115	0	1	0	0	0	0	0	0	0	7267	1189	41	4		4	HLA-DOA	6	32975726	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1419944	32975726	138139341	135	108697											
B3GALT4	8705	broad.mit.edu	37	chr6	33246358	33246358	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggggccacaggaaaggCaggaacaggaccttctctct	13	12	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33246358	A	A	33246358	1	1	115	0	1	0	0	0	0	0	0	0	1254	725	25	3		3	B3GALT4	6	33246358	3'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	270632	33246358	137868709	136	108698											
KIAA0240	23506	broad.mit.edu	37	chr6	42796705	42796705	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagattagtggttctggtCaaatacagttaattgggtca	11	5	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42796705	T	T	42796705	4	4	115	1	0	0	0	0	0	1	0	0	8234	827	29	4	648	4	KIAA0240	6	42796705	Nonsense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	9550347	42796705	128318362	137	108699											
CUL7	9820	broad.mit.edu	37	chr6	43007936	43007936	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgttcaaagtgcccctcaGgtaggagggcaggcaggttc	14	10	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43007936	C	C	43007936	3	2	115	1	0	0	0	0	1	0	0	0	4093	991	35	4	864	4	CUL7	6	43007936	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	211231	43007936	128107131	138	108700											
ZNF318	24149	broad.mit.edu	37	chr6	43333100	43333100	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtcgccgttctggtgtgcTaacacagaagtggtcattgc	12	11	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43333100	A	A	43333100	3	1	115	1	0	0	0	0	1	0	0	0	17962	1522	53	5	6397	5	ZNF318	6	43333100	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	325164	43333100	127781967	139	108701											
GTPBP2	54676	broad.mit.edu	37	chr6	43593055	43593055	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccttcactactaccatccCatcctcagagtctggcccca	5	18	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43593055	G	G	43593055	1	3	115	0	1	0	0	0	0	0	0	0	6945	609	21	4		4	GTPBP2	6	43593055	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	259955	43593055	127522012	140	108702											
DST	667	broad.mit.edu	37	chr6	56382331	56382331	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagctgagcagaagtctggtCttgctcaagcctgatgtcac	11	10	4	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56382331	G	G	56382331	3	3	115	1	0	0	0	0	1	0	0	0	4823	913	32	4	5303	4	DST	6	56382331	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	12789276	56382331	114732736	141	108703											
DST	667	broad.mit.edu	37	chr6	56468068	56468068	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacacgttgctgagggaagAgaaggcggtcttcaaactct	13	8	3	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56468068	T	T	56468068	1	4	115	0	1	0	0	0	0	0	0	0	4823	319	11	5		5	DST	6	56468068	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	85737	56468068	114646999	142	108704											
CD109	135228	broad.mit.edu	37	chr6	74519647	74519647	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagagtaggaatatttaaTggtataaaatgtaatttttc	7	3	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74519647	C	C	74519647	1	2	115	0	1	0	0	0	0	0	0	0	2993	1479	51	5		5	CD109	6	74519647	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	18051579	74519647	96595420	143	108705											
DOPEY1	23033	broad.mit.edu	37	chr6	83818499	83818499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgtagtcattcatataCaggtatcatttttaagccaa	7	6	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83818499	A	A	83818499	1	1	115	0	1	0	0	0	0	0	0	0	4747	493	17	3		3	DOPEY1	6	83818499	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	9298852	83818499	87296568	144	108706											
GJA10	84694	broad.mit.edu	37	chr6	90605301	90605301	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtcctggctaggtacaActacggctcctagaaactgt	9	12	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90605301	C	C	90605301	3	2	115	1	0	0	0	0	1	0	0	0	6465	43	2	5	1116	5	GJA10	6	90605301	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	6786802	90605301	80509766	145	108707											
SCML4	256380	broad.mit.edu	37	chr6	108041851	108041851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccagatgctgtgctcccCgcgcaagggcaagggatgtt	13	13	0	1	rs141326797	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108041851	T	T	108041851	1	4	115	0	1	0	0	0	0	0	0	0	14024	667	23	4		4	SCML4	6	108041851	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	17436550	108041851	63073216	146	108708											
LAMA4	3910	broad.mit.edu	37	chr6	112471753	112471753	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttaacggcatcactgagTctggttttaagggcactttt	10	8	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112471753	C	C	112471753	2	2	115	1	0	0	0	0	0	0	0	1	8680	1664	58	5		5	LAMA4	6	112471753	Silent	SNP	T	TCGA-44-3398-01A-01D-1105-08	4429902	112471753	58643314	147	108709											
HS3ST5	222537	broad.mit.edu	37	chr6	114378488	114378488	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaggatgaaagaatttgCgcaatttagtaatgacagag	10	3	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114378488	T	T	114378488	3	4	115	1	0	0	0	0	1	0	0	0	7435	768	27	4	70	4	HS3ST5	6	114378488	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	1906735	114378488	56736579	148	108710											
TSPYL4	23270	broad.mit.edu	37	chr6	116574053	116574053	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgggccacagttctcctttGataatctctgcaattctgtc	7	11	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116574053	A	A	116574053	2	1	115	1	0	0	0	0	0	0	0	1	16786	1280	45	4		4	TSPYL4	6	116574053	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	2195565	116574053	54541014	149	108711											
GPRC6A	222545	broad.mit.edu	37	chr6	117130667	117130667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccactgtgacttctgtaCaagtgtcatagatttcatac	7	9	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117130667	A	A	117130667	3	1	115	1	0	0	0	0	1	0	0	0	6794	478	17	3	2492	3	GPRC6A	6	117130667	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	556614	117130667	53984400	150	108712											
C6orf204	387119	broad.mit.edu	37	chr6	118953676	118953676	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccactgtcagaagctatacTgtgtctcctgatatggttat	8	9	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118953676	A	A	118953676	3	1	115	1	0	0	0	0	1	0	0	0	2376	1580	55	5	2347	5	C6orf204	6	118953676	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	1823009	118953676	52161391	151	108713											
TMEM200A	114801	broad.mit.edu	37	chr6	130762134	130762134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgtacactggtttgatGggagaaacagaagtaaaaca	12	5	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130762134	T	T	130762134	3	4	115	1	0	0	0	0	1	0	0	0	16246	1348	47	2	569	2	TMEM200A	6	130762134	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	11808458	130762134	40352933	152	108714											
MAP7	9053	broad.mit.edu	37	chr6	136710623	136710623	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagtgctgcctggctcgctCttctctttctaaccacacta	7	14	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136710623	G	G	136710623	3	3	115	1	0	0	0	0	1	0	0	0	9358	922	32	4	2032	4	MAP7	6	136710623	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	5948489	136710623	34404444	153	108715											
IGF2R	3482	broad.mit.edu	37	chr6	160485336	160485336	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggccagggatactttgtctCacactcttcagggtgtgtgg	13	9	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160485336	G	G	160485336	1	3	115	0	1	0	0	0	0	0	0	0	7646	841	29	4		4	IGF2R	6	160485336	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	23774713	160485336	10629731	154	108716											
MAP3K4	4216	broad.mit.edu	37	chr6	161508851	161508851	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagattcagatgacgtactCatcgatgcctatctgcttct	7	10	4	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161508851	T	T	161508851	2	4	115	1	0	0	0	0	0	0	0	1	9344	813	29	4		4	MAP3K4	6	161508851	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	1023515	161508851	9606216	155	108717											
TTLL2	83887	broad.mit.edu	37	chr6	167753646	167753646	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggggccctcttgaagccGctggtttttcgcgttgacga	13	11	2	2	rs150930685		TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167753646	T	T	167753646	2	4	115	1	0	0	0	0	0	0	0	1	16853	1074	38	3		3	TTLL2	6	167753646	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	6244795	167753646	3361421	156	108718											
PHF14	9678	broad.mit.edu	37	chr7	11013900	11013900	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acctcggcgctgcctgggctCctgcagcctctccctaagtc	10	18	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11013900	G	G	11013900	1	3	115	0	1	0	0	0	0	0	0	0	11920	870	30	4		4	PHF14	7	11013900	5'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08		11013900	148124763	157	108719											
DNAH11	8701	broad.mit.edu	37	chr7	21730311	21730311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatttgcattttgcagtGgtttgcatttgtcaatgtgc	9	5	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21730311	T	T	21730311	1	4	115	0	1	0	0	0	0	0	0	0	4639	1363	47	2		2	DNAH11	7	21730311	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	10716411	21730311	137408352	158	108720											
DNAH11	8701	broad.mit.edu	37	chr7	21757385	21757385	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaaagcttttctgtgttcCttttcaggtatgtggccagt	9	7	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21757385	G	G	21757385	1	3	115	0	1	0	0	0	0	0	0	0	4639	696	24	4		4	DNAH11	7	21757385	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	27074	21757385	137381278	159	108721											
DNAH11	8701	broad.mit.edu	37	chr7	21856357	21856357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactggctttctgtttacCtgctgtgaagtgggtctgat	13	7	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21856357	A	A	21856357	1	1	115	0	1	0	0	0	0	0	0	0	4639	696	24	2		2	DNAH11	7	21856357	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	98972	21856357	137282306	160	108722											
C7orf46	340277	broad.mit.edu	37	chr7	23729109	23729109	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattataaacacataaactCagaatgtttatatgtcttcc	3	7	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23729109	G	G	23729109	1	3	115	0	1	0	0	0	0	0	0	0	2421	841	29	4		4	C7orf46	7	23729109	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1872752	23729109	135409554	161	108723											
ZMIZ2	83637	broad.mit.edu	37	chr7	44806322	44806322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggctagaggtggtgtgtcTgttccaggtgcgttctggaa	17	6	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44806322	A	A	44806322	1	1	115	0	1	0	0	0	0	0	0	0	17823	1595	55	5		5	ZMIZ2	7	44806322	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	21077213	44806322	114332341	162	108724											
ZNF679	168417	broad.mit.edu	37	chr7	63709539	63709539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagccgagaaatggtgaGtgctgggtctgtcaccgtga	16	7	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63709539	T	T	63709539	1	4	115	0	1	0	0	0	0	0	0	0	18213	1044	36	3		3	ZNF679	7	63709539	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	18903217	63709539	95429124	163	108725											
POMZP3	22932	broad.mit.edu	37	chr7	76254707	76254707	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgttattaggttctttcatGaaagccaaagaaggaggcct	10	7	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76254707	A	A	76254707	1	1	115	0	1	0	0	0	0	0	0	0	12342	1305	45	4		4	POMZP3	7	76254707	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	12545168	76254707	82883956	164	108726											
SEMA3C	10512	broad.mit.edu	37	chr7	80418660	80418660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtatctcccatcagcaGcgttcactcgatccacagct	7	15	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80418660	T	T	80418660	3	4	115	1	0	0	0	0	1	0	0	0	14139	971	34	3	967	3	SEMA3C	7	80418660	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	4163953	80418660	78720003	165	108727											
CACNA2D1	781	broad.mit.edu	37	chr7	81626548	81626548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaatccaatgttactgGctcctgagatttggggttct	11	7	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81626548	T	T	81626548	3	4	115	1	0	0	0	0	1	0	0	0	2574	1203	42	3	1750	3	CACNA2D1	7	81626548	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1207888	81626548	77512115	166	108728											
ABCB1	5243	broad.mit.edu	37	chr7	87179864	87179864	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatattatctggtttgtgccCactcttcgaatagctgtcaa	7	9	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87179864	T	T	87179864	3	4	115	1	0	0	0	0	1	0	0	0	40	594	21	4	2770	4	ABCB1	7	87179864	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	5553316	87179864	71958799	167	108729											
ALKBH4	54784	broad.mit.edu	37	chr7	102100065	102100065	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctacctgcttcctccgtcCagactgggagagcttccagg	11	14	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102100065	G	G	102100065	3	3	115	1	0	0	0	0	1	0	0	0	529	603	21	4	609	4	ALKBH4	7	102100065	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	14920201	102100065	57038598	168	108730											
FBXL13	222235	broad.mit.edu	37	chr7	102553679	102553679	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgcctgaaaagacaaaagaGaggaaggaaagtattatact	11	4	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102553679	C	C	102553679	1	2	115	0	1	0	0	0	0	0	0	0	5766	957	33	4		4	FBXL13	7	102553679	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	453614	102553679	56584984	169	108731											
FEZF1	389549	broad.mit.edu	37	chr7	121942174	121942174	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcggttcagtgcctggttcGccagctggcgtgcgggccag	18	12	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121942174	A	A	121942174	2	1	115	1	0	0	0	0	0	0	0	1	5882	1074	38	4		4	FEZF1	7	121942174	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	19388495	121942174	37196489	170	108732											
ZNF800	168850	broad.mit.edu	37	chr7	127014855	127014855	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgtaaccggtactgtttTtgactgttcagtgctagttt	9	7	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127014855	A	A	127014855	4	1	115	1	0	0	0	0	0	1	0	0	18298	1850	64	5	1467	5	ZNF800	7	127014855	Nonsense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	5072681	127014855	32123808	171	108733											
CHRM2	1129	broad.mit.edu	37	chr7	136623025	136623025	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaaagaagagtgcttcAgctgccgcctaaggttgttg	11	7	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136623025	T	T	136623025	1	4	115	0	1	0	0	0	0	0	0	0	3408	203	7	5		5	CHRM2	7	136623025	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	9608170	136623025	22515638	172	108734											
TAS2R5	54429	broad.mit.edu	37	chr7	141490127	141490127	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actaccaggggatctgacctCagccaggagcagtgagagcc	13	12	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141490127	G	G	141490127	1	3	115	0	1	0	0	0	0	0	0	0	15702	841	29	4		4	TAS2R5	7	141490127	5'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	4867102	141490127	17648536	173	108735											
TRPV5	56302	broad.mit.edu	37	chr7	142605804	142605804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctctgggacgcggtccggGacagggaggaagttggaaga	19	7	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142605804	T	T	142605804	3	4	115	1	0	0	0	0	1	0	0	0	16724	1174	41	3	127	3	TRPV5	7	142605804	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1115677	142605804	16532859	174	108736											
OR2A14	135941	broad.mit.edu	37	chr7	143826479	143826479	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaccaggaaagcaccatcTccttttttccatgcataatg	6	11	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143826479	A	A	143826479	3	1	115	1	0	0	0	0	1	0	0	0	11070	1551	54	5	276	5	OR2A14	7	143826479	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	1220675	143826479	15312184	175	108737											
TMEM176B	28959	broad.mit.edu	37	chr7	150493537	150493537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaacttcttcagagaacCtccagctttcagcagttgtg	8	10	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150493537	T	T	150493537	3	4	115	1	0	0	0	0	1	0	0	0	16216	681	24	4	715	4	TMEM176B	7	150493537	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	6667058	150493537	8645126	176	108738											
MTMR9	66036	broad.mit.edu	37	chr8	11177386	11177386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaacttcttaacggtcagGtgtgcatgcggctgcctgtg	13	10	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11177386	T	T	11177386	1	4	115	0	1	0	0	0	0	0	0	0	10044	1276	44	3		3	MTMR9	8	11177386	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08		11177386	135186636	177	108739											
MSR1	4481	broad.mit.edu	37	chr8	16032786	16032786	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaggacttcagtttctcttGaagggaagggctgtttttag	13	5	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16032786	T	T	16032786	3	4	115	1	0	0	0	0	1	0	0	0	9980	1299	45	3	1308	3	MSR1	8	16032786	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	4855400	16032786	130331236	178	108740											
DDHD2	23259	broad.mit.edu	37	chr8	38109393	38109394	+	Intron	DNP	GC	AT	AT													ctacaggtgcatgccgtcatGcccagcttctccacataact							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	38109394	AT	AT	38109393	1	1	115	0	1	0	0	0	0	0	0	0	4360	1334	46	4		4	DDHD2	8	38109393	Intron	DNP	GC	TCGA-44-3398-01A-01D-1105-08	22076607	38109393	108254629	179	108741											
DPYS	1807	broad.mit.edu	37	chr8	105405013	105405013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactgtggcacactcaccCggtctcgctgctttattcgt	8	16	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105405013	A	A	105405013	3	1	115	1	0	0	0	0	1	0	0	0	4786	666	23	1	125	1	DPYS	8	105405013	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	67295620	105405013	40959009	180	108742											
DPYS	1807	broad.mit.edu	37	chr8	105440465	105440465	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caattgaagtcagaaaaatcCaatggagaatgagcagtttt	9	5	1	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105440465	G	G	105440465	1	3	115	0	1	0	0	0	0	0	0	0	4786	609	21	4		4	DPYS	8	105440465	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	35452	105440465	40923557	181	108743											
ANGPT1	284	broad.mit.edu	37	chr8	108348464	108348464	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggataatgaattctccagCagctgtatctcaagtcgaga	10	8	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108348464	T	T	108348464	2	4	115	1	0	0	0	0	0	0	0	1	610	697	25	4		4	ANGPT1	8	108348464	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	2907999	108348464	38015558	182	108744											
CSMD3	114788	broad.mit.edu	37	chr8	113871361	113871361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttaaatcacagatGgtgttctcttaccttatttg	5	6	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113871361	T	T	113871361	1	4	115	0	1	0	0	0	0	0	0	0	3980	1363	47	2		2	CSMD3	8	113871361	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	5522897	113871361	32492661	183	108745											
TRPS1	7227	broad.mit.edu	37	chr8	116599248	116599248	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgtaacagggactgggattCatccttggacttgttttctc	10	10	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116599248	T	T	116599248	3	4	115	1	0	0	0	0	1	0	0	0	16718	835	29	4	1216	4	TRPS1	8	116599248	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2727887	116599248	29764774	184	108746											
FAM135B	51059	broad.mit.edu	37	chr8	139153491	139153491	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggttcccaggtgaggcccaGagagtgacaggaacgtgtgg	18	8	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139153491	C	C	139153491	3	2	115	1	0	0	0	0	1	0	0	0	5495	942	33	4	496	4	FAM135B	8	139153491	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	22554243	139153491	7210531	185	108747											
MAPK15	225689	broad.mit.edu	37	chr8	144800454	144800454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacgacagggacatttacCtggtgtttgagtttatgggt	13	5	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144800454	A	A	144800454	3	1	115	1	0	0	0	0	1	0	0	0	9369	680	24	2	282	2	MAPK15	8	144800454	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	5646963	144800454	1563568	186	108748											
PLEC	5339	broad.mit.edu	37	chr8	144991151	144991151	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtccaggatgccagccaCggggcccgtctcctcagtgg	14	15	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144991151	T	T	144991151	3	4	115	1	0	0	0	0	1	0	0	0	12147	536	19	4	809	4	PLEC	8	144991151	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	190697	144991151	1372871	187	108749											
MTAP	4507	broad.mit.edu	37	chr9	21837988	21837988	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catattccaatggctgagccGttttgccccaaaacgagaga	9	11	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21837988	A	A	21837988	2	1	115	1	0	0	0	0	0	0	0	1	10005	1132	40	4		4	MTAP	9	21837988	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08		21837988	119375443	188	108750											
TOPORS	10210	broad.mit.edu	37	chr9	32541658	32541658	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacaccaaattcagcttcTattgtaactacatctttagt	4	10	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32541658	C	C	32541658	3	2	115	1	0	0	0	0	1	0	0	0	16494	1512	53	5	276	5	TOPORS	9	32541658	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	10703670	32541658	108671773	189	108751											
UBAP2	55833	broad.mit.edu	37	chr9	33948372	33948372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaacaatgtatacctacCaagatgactgaggactgagg	9	9	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33948372	A	A	33948372	3	1	115	1	0	0	0	0	1	0	0	0	16963	608	21	2	2157	2	UBAP2	9	33948372	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	1406714	33948372	107265059	190	108752											
FRMPD1	22844	broad.mit.edu	37	chr9	37730993	37730993	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcgcaggtggtagaaaggGaggagtcacatgactaccgc	14	9	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37730993	T	T	37730993	4	4	115	1	0	0	0	0	0	1	0	0	6117	1175	41	3	781	3	FRMPD1	9	37730993	Nonsense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	3782621	37730993	103482438	191	108753											
TLE1	7088	broad.mit.edu	37	chr9	84200404	84200404	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaacggcctccagtttccTttcggctgaactcaccacag	7	15	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84200404	A	A	84200404	1	1	115	0	1	0	0	0	0	0	0	0	16061	1624	56	5		5	TLE1	9	84200404	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	46469411	84200404	57013027	192	108754											
IARS	3376	broad.mit.edu	37	chr9	94973045	94973045	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtatgtgtaggggataggTgtaattagggaagggctgac	17	2	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94973045	A	A	94973045	1	1	115	0	1	0	0	0	0	0	0	0	7543	1711	59	5		5	IARS	9	94973045	3'UTR	SNP	T	TCGA-44-3398-01A-01D-1105-08	10772641	94973045	46240386	193	108755											
CTNNAL1	8727	broad.mit.edu	37	chr9	111745468	111745468	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatactgatagatgaaatgTcagtctctccattcggttta	7	7	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111745468	A	A	111745468	3	1	115	1	0	0	0	0	1	0	0	0	4049	1667	58	5	1403	5	CTNNAL1	9	111745468	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	16772423	111745468	29467963	194	108756											
SETX	23064	broad.mit.edu	37	chr9	135205014	135205014	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagtgttatctgctttgatCaatacactgtcttgcacttt	6	8	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135205014	T	T	135205014	2	4	115	1	0	0	0	0	0	0	0	1	14254	825	29	4		4	SETX	9	135205014	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	23459546	135205014	6008417	195	108757											
FCN1	2219	broad.mit.edu	37	chr9	137801922	137801922	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtggggtttgcagatGctggaaaaagccctgccact	12	8	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137801922	C	C	137801922	1	2	115	0	1	0	0	0	0	0	0	0	5848	1334	46	4		4	FCN1	9	137801922	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	2596908	137801922	3411509	196	108758											
FAM107B	83641	broad.mit.edu	37	chr10	14765301	14765301	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggcacagagggtatctgcAcaccttcagaccagtctgca	10	12	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14765301	T	T	14765301	1	4	115	0	1	0	0	0	0	0	0	0	5436	174	6	5		5	FAM107B	10	14765301	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08		14765301	120769446	197	108759											
PTER	9317	broad.mit.edu	37	chr10	16528647	16528647	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttacaaatggatgcaaActgccatataattaatgcat	6	7	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16528647	T	T	16528647	1	4	115	0	1	0	0	0	0	0	0	0	12845	58	2	5		5	PTER	10	16528647	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	1763346	16528647	119006100	198	108760											
ZNF438	220929	broad.mit.edu	37	chr10	31134418	31134418	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaaaagactgagcagtaatCtgacaacgaccacatttgat	8	9	1	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31134418	A	A	31134418	3	1	115	1	0	0	0	0	1	0	0	0	18037	912	32	3	531	3	ZNF438	10	31134418	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	14605771	31134418	104400329	199	108761											
DDX50	79009	broad.mit.edu	37	chr10	70694527	70694527	+	Intron	DEL	A	-	-													ctgcaacttgctagatttttAaaaaatattaccttttataa							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70694527	-	-	70694527	6	5	115	0	1	1	0	1	0	0	0	0	4401	377	13	0		0	DDX50	10	70694527	Intron	DEL	A	TCGA-44-3398-01A-01D-1105-08	39560109	70694527	64840220	200	108762											
CDHR1	92211	broad.mit.edu	37	chr10	85957426	85957426	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctgctccagggatctatTggcacgcccagacctcctct	8	17	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85957426	C	C	85957426	1	2	115	0	1	0	0	0	0	0	0	0	3148	1827	63	5		5	CDHR1	10	85957426	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	15262899	85957426	49577321	201	108763											
PTEN	5728	broad.mit.edu	37	chr10	89624246	89624247	+	Frame_Shift_Ins	INS	-	G	G													atgacagccatcatcaaagaINSgatcgttagcagaaacaaaa							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89624247	G	G	89624246	7	5	115	1	0	1	1	0	0	0	0	0	12844	304	11	0	22	0	PTEN	10	89624246	Frame_Shift_Ins	INS	-	TCGA-44-3398-01A-01D-1105-08	3666820	89624246	45910501	202	108764											
SLIT1	6585	broad.mit.edu	37	chr10	98816908	98816908	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagggacagtctagcaggCcagaggaaagctggcccttc	13	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98816908	G	G	98816908	1	3	115	0	1	0	0	0	0	0	0	0	14853	754	26	4		4	SLIT1	10	98816908	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	9192662	98816908	36717839	203	108765											
PNLIP	5406	broad.mit.edu	37	chr10	118305595	118305595	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agactcaatcatgtttttaaTttcgtgtagatgctgccact	7	8	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118305595	G	G	118305595	1	3	115	0	1	0	0	0	0	0	0	0	12244	1508	52	5		5	PNLIP	10	118305595	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	19488687	118305595	17229152	204	108766											
BAG3	9531	broad.mit.edu	37	chr10	121432086	121432086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagggtgcatcgagccGggagggctcaccagccagga	16	12	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121432086	T	T	121432086	3	4	115	1	0	0	0	0	1	0	0	0	1293	1116	39	1	837	1	BAG3	10	121432086	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	3126491	121432086	14102661	205	108767											
ATE1	11101	broad.mit.edu	37	chr10	123658331	123658331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagacaaccttatcaaCacagaaaacaacagttaaca	3	12	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123658331	A	A	123658331	1	1	115	0	1	0	0	0	0	0	0	0	1082	493	17	3		3	ATE1	10	123658331	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	2226245	123658331	11876416	206	108768											
ADAM12	8038	broad.mit.edu	37	chr10	127708376	127708376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagaggcttctgaggggGgtttggcttacaggtcccct	16	9	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127708376	T	T	127708376	3	4	115	1	0	0	0	0	1	0	0	0	236	1232	43	2	180	2	ADAM12	10	127708376	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	4050045	127708376	7826371	207	108769											
EBF3	253738	broad.mit.edu	37	chr10	131665611	131665611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagttggatataattacCaaaatgagcacaaattggac	8	7	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131665611	A	A	131665611	1	1	115	0	1	0	0	0	0	0	0	0	4922	609	21	2		2	EBF3	10	131665611	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	3957235	131665611	3869136	208	108770											
TALDO1	6888	broad.mit.edu	37	chr11	758936	758936	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctaacctgctttttttcCctttgaatttcaggtcacaa	4	11	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	758936	T	T	758936	1	4	115	0	1	0	0	0	0	0	0	0	15662	638	22	4		4	TALDO1	11	758936	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08		758936	134247580	209	108771											
OR52A4	390053	broad.mit.edu	37	chr11	5142232	5142232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtaaacatcttcagtggCaagcttcacaagggccacgc	9	11	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5142232	A	A	5142232	3	1	115	1	0	0	0	0	1	0	0	0	11203	710	25	3	341	3	OR52A4	11	5142232	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4383296	5142232	129864284	210	108772											
CNGA4	1262	broad.mit.edu	37	chr11	6260417	6260417	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggacatctcacacccCagcaccagaccacagaacca	8	16	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6260417	A	A	6260417	1	1	115	0	1	0	0	0	0	0	0	0	3631	609	21	2		2	CNGA4	11	6260417	5'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	1118185	6260417	128746099	211	108773											
CCKBR	887	broad.mit.edu	37	chr11	6290956	6290956	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatcttcctgatgagcgttgGaggaaatatgctcatcatcg	11	8	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6290956	C	C	6290956	3	2	115	1	0	0	0	0	1	0	0	0	2909	1174	41	4	215	4	CCKBR	11	6290956	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	30539	6290956	128715560	212	108774											
SYT9	143425	broad.mit.edu	37	chr11	7335004	7335004	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagtgtttttatttccGgttccctacaatgaccttga	8	8	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7335004	T	T	7335004	2	4	115	1	0	0	0	0	0	0	0	1	15600	1103	39	1		1	SYT9	11	7335004	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	1044048	7335004	127671512	213	108775											
MPPED2	744	broad.mit.edu	37	chr11	30432971	30432971	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttataattagaaaaatggcAgtttatagaccttccctcac	5	8	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30432971	T	T	30432971	1	4	115	0	1	0	0	0	0	0	0	0	9836	203	7	5		5	MPPED2	11	30432971	3'UTR	SNP	A	TCGA-44-3398-01A-01D-1105-08	23097967	30432971	104573545	214	108776											
CD82	3732	broad.mit.edu	37	chr11	44626629	44626629	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacctcctccagctcgcttaGgatgggggcctatgtcttca	10	13	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44626629	C	C	44626629	3	2	115	1	0	0	0	0	1	0	0	0	3070	1000	35	4	168	4	CD82	11	44626629	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	14193658	44626629	90379887	215	108777											
PEX16	9409	broad.mit.edu	37	chr11	45937766	45937766	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcccaccctgttcttggCagaattctcaccacaggcaa	7	15	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45937766	T	T	45937766	1	4	115	0	1	0	0	0	0	0	0	0	11838	725	25	4		4	PEX16	11	45937766	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1311137	45937766	89068750	216	108778											
CELF1	10658	broad.mit.edu	37	chr11	47510459	47510459	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacacagcaccatactgttcGaagagttcccgcaagtcctt	7	13	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47510459	C	C	47510459	3	2	115	1	0	0	0	0	1	0	0	0	3245	1049	37	4	1403	4	CELF1	11	47510459	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1572693	47510459	87496057	217	108779											
OR4C15	81309	broad.mit.edu	37	chr11	55321922	55321922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacatgatccctgttggagCtttcatcttttccttgggaa	8	9	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55321922	A	A	55321922	3	1	115	1	0	0	0	0	1	0	0	0	11142	797	28	3	142	3	OR4C15	11	55321922	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	7811463	55321922	79684594	218	108780											
OR5L2	26338	broad.mit.edu	37	chr11	55595148	55595148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttgctgctacttctgtGggacggtgtgttctctgatt	11	10	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55595148	T	T	55595148	3	4	115	1	0	0	0	0	1	0	0	0	11265	1348	47	2	456	2	OR5L2	11	55595148	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	273226	55595148	79411368	219	108781											
OR5D16	390144	broad.mit.edu	37	chr11	55607016	55607016	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctcttcctctactgtgtAcccaactccaaaaactccag	3	16	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55607016	G	G	55607016	2	3	115	1	0	0	0	0	0	0	0	1	11250	378	14	5		5	OR5D16	11	55607016	Silent	SNP	A	TCGA-44-3398-01A-01D-1105-08	11868	55607016	79399500	220	108782											
OR5M11	219487	broad.mit.edu	37	chr11	56310155	56310155	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaacatggcatgctctttGacataagtatcagaacaaga	8	7	2	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56310155	C	C	56310155	2	2	115	1	0	0	0	0	0	0	0	1	11268	1277	45	4		4	OR5M11	11	56310155	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	703139	56310155	78696361	221	108783											
OR5B12	390191	broad.mit.edu	37	chr11	58207039	58207039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaccacaaaaaaaataaCcatctcactgatgtagttgt	4	11	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58207039	A	A	58207039	3	1	115	1	0	0	0	0	1	0	0	0	11242	507	18	3	362	3	OR5B12	11	58207039	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	1896884	58207039	76799477	222	108784											
ZP1	22917	broad.mit.edu	37	chr11	60643148	60643148	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatgggcccaataaacaatCatttcaaacctactgaaacc	5	11	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60643148	A	A	60643148	1	1	115	0	1	0	0	0	0	0	0	0	18344	841	29	3		3	ZP1	11	60643148	3'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	2436109	60643148	74363368	223	108785											
PGA5	5222	broad.mit.edu	37	chr11	61017381	61017381	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttttctcaccctcactcTttccagatggtggtcagctg	7	13	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61017381	A	A	61017381	1	1	115	0	1	0	0	0	0	0	0	0	11867	1624	56	5		5	PGA5	11	61017381	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	374233	61017381	73989135	224	108786											
WDR74	54663	broad.mit.edu	37	chr11	62606910	62606910	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagatttacccctgagagacGaaggcgtcagtcacgccagg	12	11	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62606910	A	A	62606910	1	1	115	0	1	0	0	0	0	0	0	0	17451	1073	37	4		4	WDR74	11	62606910	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1589529	62606910	72399606	225	108787											
RHOD	29984	broad.mit.edu	37	chr11	66834240	66834240	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaccgcctgcggcccctGttctaccctgacgccagcgt	10	17	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66834240	T	T	66834240	2	4	115	1	0	0	0	0	0	0	0	1	13446	1364	48	3		3	RHOD	11	66834240	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	4227330	66834240	68172276	226	108788											
ARRB1	408	broad.mit.edu	37	chr11	74977166	74977166	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtaagcatccgagtgcacGagagtggagccggagccacg	16	10	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74977166	A	A	74977166	1	1	115	0	1	0	0	0	0	0	0	0	984	1073	37	4		4	ARRB1	11	74977166	3'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	8142926	74977166	60029350	227	108789											
SYTL2	54843	broad.mit.edu	37	chr11	85436910	85436910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcctattttcagaaacaCttggttcaagcacttgtttt	6	8	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85436910	A	A	85436910	1	1	115	0	1	0	0	0	0	0	0	0	15602	565	20	3		3	SYTL2	11	85436910	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	10459744	85436910	49569606	228	108790											
FOLH1B	219595	broad.mit.edu	37	chr11	89424161	89424161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacctcactgtggcccagGttcgaggagggatggtgttt	14	9	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89424161	T	T	89424161	3	4	115	1	0	0	0	0	1	0	0	0	6038	1261	44	3	845	3	FOLH1B	11	89424161	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	3987251	89424161	45582355	229	108791											
MRE11A	4361	broad.mit.edu	37	chr11	94209498	94209498	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttaaaccaagagttctcatCttcctttggtctcaacattg	6	10	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94209498	A	A	94209498	3	1	115	1	0	0	0	0	1	0	0	0	9853	913	32	3	1566	3	MRE11A	11	94209498	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4785337	94209498	40797018	230	108792											
CNTN5	53942	broad.mit.edu	37	chr11	99786762	99786762	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattcttttctgccttggatCtaaatgttttattatgttga	6	6	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99786762	A	A	99786762	1	1	115	0	1	0	0	0	0	0	0	0	3676	928	32	3		3	CNTN5	11	99786762	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	5577264	99786762	35219754	231	108793											
CASP5	838	broad.mit.edu	37	chr11	104872881	104872881	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaactttgtattgcatatGatgagagccaggcgtctgcg	11	8	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104872881	A	A	104872881	2	1	115	1	0	0	0	0	0	0	0	1	2700	1280	45	4		4	CASP5	11	104872881	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	5086119	104872881	30133635	232	108794											
CASP1	834	broad.mit.edu	37	chr11	104916168	104916168	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcttcccagagaaagaatCagaactgtagcctgcatcag	8	10	3	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104916168	G	G	104916168	1	3	115	0	1	0	0	0	0	0	0	0	2694	841	29	4		4	CASP1	11	104916168	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	43287	104916168	30090348	233	108795											
EXPH5	23086	broad.mit.edu	37	chr11	108381132	108381132	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagacgtttttaaactcaTtctgatgtcgttgtgaaatg	9	6	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108381132	A	A	108381132	3	1	115	1	0	0	0	0	1	0	0	0	5365	1493	52	5	871	5	EXPH5	11	108381132	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	3464964	108381132	26625384	234	108796											
HMBS	3145	broad.mit.edu	37	chr11	118960719	118960719	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggaaaaccctcatgatGctgttgtctttcacccaaaa	9	11	3	1	rs143984293		TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118960719	A	A	118960719	3	1	115	1	0	0	0	0	1	0	0	0	7286	1319	46	4	390	4	HMBS	11	118960719	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	10579587	118960719	16045797	235	108797											
CBL	867	broad.mit.edu	37	chr11	119103454	119103454	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcaggtctgtgactgcctGaatgggtaacacatagaagt	12	7	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119103454	C	C	119103454	1	2	115	0	1	0	0	0	0	0	0	0	2726	1305	45	4		4	CBL	11	119103454	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	142735	119103454	15903062	236	108798											
FLI1	2313	broad.mit.edu	37	chr11	128680783	128680783	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcttctttggagccgcatCacaatactggacctccccca	7	16	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128680783	T	T	128680783	3	4	115	1	0	0	0	0	1	0	0	0	5981	838	29	4	1293	4	FLI1	11	128680783	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	9577329	128680783	6325733	237	108799											
ST14	6768	broad.mit.edu	37	chr11	130068703	130068703	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaacctgtagcagggcaggGaggccagtgggcgtgggtgg	21	7	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130068703	T	T	130068703	1	4	115	0	1	0	0	0	0	0	0	0	15329	1189	41	3		3	ST14	11	130068703	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1387920	130068703	4937813	238	108800											
CACNA2D4	93589	broad.mit.edu	37	chr12	1984472	1984472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccacactgttgtagttaGgtttgggttttagtttcttc	10	6	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1984472	T	T	1984472	3	4	115	1	0	0	0	0	1	0	0	0	2577	1000	35	2	1750	2	CACNA2D4	12	1984472	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08		1984472	131867423	239	108801											
CACNA1C	775	broad.mit.edu	37	chr12	2742744	2742744	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtgttgctctgttcttgtCtgtctaatattcctttttaa	7	7	4	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2742744	A	A	2742744	1	1	115	0	1	0	0	0	0	0	0	0	2566	928	32	3		3	CACNA1C	12	2742744	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	758272	2742744	131109151	240	108802											
FOXM1	2305	broad.mit.edu	37	chr12	2968862	2968862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagataaggtgaaccaacGgtcaccagacaggacgcaca	11	11	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2968862	T	T	2968862	1	4	115	0	1	0	0	0	0	0	0	0	6078	1131	39	1		1	FOXM1	12	2968862	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	226118	2968862	130883033	241	108803											
C12orf4	57102	broad.mit.edu	37	chr12	4627461	4627461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaaagatacttaagcagCtacagaaagtccagtataac	8	8	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4627461	A	A	4627461	1	1	115	0	1	0	0	0	0	0	0	0	1698	812	28	3		3	C12orf4	12	4627461	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1658599	4627461	129224434	242	108804											
KCNA1	3736	broad.mit.edu	37	chr12	5021622	5021622	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgcacttctccagtatcCccgatgctttctggtgggcg	11	13	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021622	T	T	5021622	3	4	115	1	0	0	0	0	1	0	0	0	8071	623	22	4	1080	4	KCNA1	12	5021622	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	394161	5021622	128830273	243	108805											
VWF	7450	broad.mit.edu	37	chr12	6126200	6126200	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagggcaatgtgggccagGgaggaggggatggggagatg	22	4	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6126200	A	A	6126200	1	1	115	0	1	0	0	0	0	0	0	0	17373	1247	43	4		4	VWF	12	6126200	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1104578	6126200	127725695	244	108806											
ETV6	2120	broad.mit.edu	37	chr12	12038881	12038881	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagaacaaacatgacctatGagaaaatgtccagagccctg	8	10	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12038881	A	A	12038881	3	1	115	1	0	0	0	0	1	0	0	0	5325	1291	45	4	1200	4	ETV6	12	12038881	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	5912681	12038881	121813014	245	108807											
GUCY2C	2984	broad.mit.edu	37	chr12	14822645	14822646	+	Intron	DNP	GG	TT	TT													agggagagaaaattcattagGgatatcttaccccggcctgt							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	14822646	TT	TT	14822645	1	4	115	0	1	0	0	0	0	0	0	0	6961	1247	43	2		2	GUCY2C	12	14822645	Intron	DNP	GG	TCGA-44-3398-01A-01D-1105-08	2783764	14822645	119029250	246	108808											
ST8SIA1	6489	broad.mit.edu	37	chr12	22408291	22408292	+	Missense_Mutation	DNP	GC	AA	AA													ccaccatttcccaccaccgcGcatttcttcaatggcagctg							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	22408292	AA	AA	22408291	3	1	115	1	0	0	0	0	1	0	0	0	15349	1079	38	4	668	4	ST8SIA1	12	22408291	Missense_Mutation	DNP	GC	TCGA-44-3398-01A-01D-1105-08	7585646	22408291	111443604	247	108809											
DENND5B	160518	broad.mit.edu	37	chr12	31630896	31630896	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagtggcatctgaaatctgTggagcagaaagcaattaact	11	7	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31630896	A	A	31630896	1	1	115	0	1	0	0	0	0	0	0	0	4477	1711	59	5		5	DENND5B	12	31630896	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	9222605	31630896	102220999	248	108810											
ARID2	196528	broad.mit.edu	37	chr12	46245579	46245579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccactcaagcatctcctGctggacaatcatcatgtact	6	14	4	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46245579	T	T	46245579	3	4	115	1	0	0	0	0	1	0	0	0	917	1319	46	3	3731	3	ARID2	12	46245579	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	14614683	46245579	87606316	249	108811											
KIF5A	3798	broad.mit.edu	37	chr12	57958835	57958835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcataggtcagtgaccCtgaagttggagggtggatat	16	5	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57958835	A	A	57958835	1	1	115	0	1	0	0	0	0	0	0	0	8375	696	24	2		2	KIF5A	12	57958835	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	11713256	57958835	75893060	250	108812											
GEFT	115557	broad.mit.edu	37	chr12	58007948	58007948	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctggagaggggccctcAtctggttgtcctgtatccta	14	10	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58007948	T	T	58007948	1	4	115	0	1	0	0	0	0	0	0	0	6392	232	8	5		5	GEFT	12	58007948	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	49113	58007948	75843947	251	108813											
LRIG3	121227	broad.mit.edu	37	chr12	59274344	59274344	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtatctttaaatgctaaagGaaaagtcagatcacatacta	7	6	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59274344	C	C	59274344	1	2	115	0	1	0	0	0	0	0	0	0	9033	1189	41	4		4	LRIG3	12	59274344	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1266396	59274344	74577551	252	108814											
CNOT2	4848	broad.mit.edu	37	chr12	70747665	70747665	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcacctgccatccaccttCaactacaaccctgctcagca	3	20	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70747665	T	T	70747665	2	4	115	1	0	0	0	0	0	0	0	1	3651	825	29	4		4	CNOT2	12	70747665	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	11473321	70747665	63104230	253	108815											
TMTC2	160335	broad.mit.edu	37	chr12	83358901	83358901	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggcttgtaagtaatactCaagtgtttatttttttatac	6	6	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83358901	T	T	83358901	1	4	115	0	1	0	0	0	0	0	0	0	16384	841	29	4		4	TMTC2	12	83358901	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	12611236	83358901	50492994	254	108816											
LRRIQ1	84125	broad.mit.edu	37	chr12	85450232	85450232	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatacaggacaaaaaacccAgataatattaggacataacc	6	8	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85450232	T	T	85450232	3	4	115	1	0	0	0	0	1	0	0	0	9116	188	7	5	1687	5	LRRIQ1	12	85450232	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	2091331	85450232	48401663	255	108817											
PLXNC1	10154	broad.mit.edu	37	chr12	94691012	94691012	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttggtgagttcaggctttCttgtgctcaccactgaactg	10	9	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94691012	G	G	94691012	1	3	115	0	1	0	0	0	0	0	0	0	12221	928	32	4		4	PLXNC1	12	94691012	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	9240780	94691012	39160883	256	108818											
VEZT	55591	broad.mit.edu	37	chr12	95680561	95680562	+	Intron	INS	-	C	C													gcctcttcaacttttttactINStttccattctgtttctttcc							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95680562	C	C	95680561	6	5	115	0	1	1	1	0	0	0	0	0	17283	1624	56	0		0	VEZT	12	95680561	Intron	INS	-	TCGA-44-3398-01A-01D-1105-08	989549	95680561	38171334	257	108819											
UTP20	27340	broad.mit.edu	37	chr12	101760205	101760205	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatggtttgggggtttgggGaggggcaaaacccaagcaaa	16	6	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101760205	A	A	101760205	1	1	115	0	1	0	0	0	0	0	0	0	17226	1189	41	4		4	UTP20	12	101760205	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	6079644	101760205	32091690	258	108820											
CUX2	23316	broad.mit.edu	37	chr12	111776002	111776002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcctcgaggctctcccctGtgtctctggcctattccatg	9	15	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111776002	T	T	111776002	1	4	115	0	1	0	0	0	0	0	0	0	4098	1392	48	3		3	CUX2	12	111776002	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	10015797	111776002	22075893	259	108821											
NCOR2	9612	broad.mit.edu	37	chr12	124820233	124820233	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcccagggtttcggagcccGaggggcagggctgccctccc	17	15	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124820233	A	A	124820233	1	1	115	0	1	0	0	0	0	0	0	0	10331	1073	37	4		4	NCOR2	12	124820233	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	13044231	124820233	9031662	260	108822											
SLC15A4	121260	broad.mit.edu	37	chr12	129294126	129294126	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatgcgacacacagtgactCccagaaatagacaatggctc	9	11	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129294126	A	A	129294126	1	1	115	0	1	0	0	0	0	0	0	0	14514	870	30	3		3	SLC15A4	12	129294126	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	4473893	129294126	4557769	261	108823											
TMEM132D	121256	broad.mit.edu	37	chr12	129559173	129559173	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggtgccccgtccctccatGagtcccatagaagaactgcc	10	15	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129559173	C	C	129559173	2	2	115	1	0	0	0	0	0	0	0	1	16170	1277	45	4		4	TMEM132D	12	129559173	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	265047	129559173	4292722	262	108824											
SACS	26278	broad.mit.edu	37	chr13	23929354	23929354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcagtaaggccaaagaacCcactgatgtgaactgggagg	12	8	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23929354	A	A	23929354	3	1	115	1	0	0	0	0	1	0	0	0	13915	623	22	2	12354	2	SACS	13	23929354	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08		23929354	91240524	263	108825											
SPG20	23111	broad.mit.edu	37	chr13	36903770	36903770	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgaatgtcagtttggcagtCtatcagtaacaactactttt	7	7	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36903770	G	G	36903770	1	3	115	0	1	0	0	0	0	0	0	0	15160	928	32	4		4	SPG20	13	36903770	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	12974416	36903770	78266108	264	108826											
POSTN	10631	broad.mit.edu	37	chr13	38154004	38154004	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcacttccacttacgtatcaGaatttctttttcttcactag	3	11	5	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38154004	C	C	38154004	3	2	115	1	0	0	0	0	1	0	0	0	12354	933	33	4	904	4	POSTN	13	38154004	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1250234	38154004	77015874	265	108827											
C13orf23	80209	broad.mit.edu	37	chr13	39597116	39597116	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatttgccaaccacatagaCcagcatttactttcaattta	4	10	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39597116	G	G	39597116	1	3	115	0	1	0	0	0	0	0	0	0	1734	522	18	4		4	C13orf23	13	39597116	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1443112	39597116	75572762	266	108828											
ZC3H13	23091	broad.mit.edu	37	chr13	46539475	46539475	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcatcacctgccagaatttCatctagttcgtcatcactga	6	12	5	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46539475	T	T	46539475	3	4	115	1	0	0	0	0	1	0	0	0	17691	835	29	4	288	4	ZC3H13	13	46539475	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	6942359	46539475	68630403	267	108829											
ZC3H13	23091	broad.mit.edu	37	chr13	46559778	46559778	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctagtatctctggcatctctCcgatcccgaccatctcgagg	8	15	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46559778	G	G	46559778	2	3	115	1	0	0	0	0	0	0	0	1	17691	842	30	4		4	ZC3H13	13	46559778	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	20303	46559778	68610100	268	108830											
STK24	8428	broad.mit.edu	37	chr13	99134596	99134596	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctataaaacaaaaaaaagaaGagaatcattttcaaaatgaa	4	4	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99134596	A	A	99134596	1	1	115	0	1	0	0	0	0	0	0	0	15411	957	33	4		4	STK24	13	99134596	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	52574818	99134596	16035282	269	108831											
NALCN	259232	broad.mit.edu	37	chr13	101742412	101742413	+	Intron	DEL	TG	-	-													ccagtcatgagtgtgggataTgtgtgtgtgtgtgtatatac							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101742413	-	-	101742412	6	5	115	0	1	1	0	1	0	0	0	0	10242	1479	51	0		0	NALCN	13	101742412	Intron	DEL	TG	TCGA-44-3398-01A-01D-1105-08	2607816	101742412	13427466	270	108832											
TMCO3	55002	broad.mit.edu	37	chr13	114154211	114154211	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acattcttctgtttagcgttCattctccaaaaattgaaagc	5	9	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114154211	G	G	114154211	1	3	115	0	1	0	0	0	0	0	0	0	16120	841	29	4		4	TMCO3	13	114154211	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	12411799	114154211	1015667	271	108833											
TMEM55B	90809	broad.mit.edu	37	chr14	20926713	20926713	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcacagtctgtgggtcatCaggctcaggagaagttctgg	15	8	5	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20926713	T	T	20926713	1	4	115	0	1	0	0	0	0	0	0	0	16305	841	29	4		4	TMEM55B	14	20926713	3'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08		20926713	86422827	272	108834											
RPGRIP1	57096	broad.mit.edu	37	chr14	21811336	21811336	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggagacagagactccagtgTccctaaggaagcctagggca	13	11	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21811336	C	C	21811336	3	2	115	1	0	0	0	0	1	0	0	0	13660	1667	58	5	3563	5	RPGRIP1	14	21811336	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	884623	21811336	85538204	273	108835											
HAUS4	54930	broad.mit.edu	37	chr14	23424312	23424312	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtggctactcttaccttGttgaagtatttccatccctt	6	11	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23424312	A	A	23424312	4	1	115	1	0	0	0	0	0	1	0	0	7034	1386	48	4	1075	4	HAUS4	14	23424312	Nonsense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1612976	23424312	83925228	274	108836											
DCAF11	80344	broad.mit.edu	37	chr14	24586142	24586142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaggccaagtgaggttgGtgcagggaggaggtgcagca	19	6	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24586142	T	T	24586142	3	4	115	1	0	0	0	0	1	0	0	0	4295	1261	44	3	178	3	DCAF11	14	24586142	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1161830	24586142	82763398	275	108837											
TM9SF1	10548	broad.mit.edu	37	chr14	24682634	24682634	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cccttcccgaagagcctgccGagaccactcatcgcgagctc	9	18	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24682634	C	C	24682634	2	2	115	1	0	0	0	0	0	0	0	1	16100	1045	37	4		4	TM9SF1	14	24682634	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	96492	24682634	82666906	276	108838											
KIAA0391	9692	broad.mit.edu	37	chr14	35739605	35739605	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctttcttatgcctggttcAgctcggaggatgatccattc	9	11	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35739605	T	T	35739605	5	4	115	1	0	0	0	0	0	0	1	0	8242	202	7	5	1445	5	KIAA0391	14	35739605	Splice_Site	SNP	A	TCGA-44-3398-01A-01D-1105-08	11056971	35739605	71609935	277	108839											
NID2	22795	broad.mit.edu	37	chr14	52520602	52520602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttttaaatctgggcccCctacctctcccagagatgtt	8	14	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52520602	A	A	52520602	3	1	115	1	0	0	0	0	1	0	0	0	10510	623	22	2	3075	2	NID2	14	52520602	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	16780997	52520602	54828938	278	108840											
C14orf135	64430	broad.mit.edu	37	chr14	60574777	60574777	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaatatgtagccaatacaGtttttcattctattcttgct	5	7	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60574777	C	C	60574777	1	2	115	0	1	0	0	0	0	0	0	0	1758	1044	36	4		4	C14orf135	14	60574777	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	8054175	60574777	46774763	279	108841											
SYNE2	23224	broad.mit.edu	37	chr14	64574293	64574293	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaacactgagcaaggcccaGaatgttccctaaggcccaac	8	13	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64574293	C	C	64574293	3	2	115	1	0	0	0	0	1	0	0	0	15565	943	33	4	12831	4	SYNE2	14	64574293	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	3999516	64574293	42775247	280	108842											
SYNE2	23224	broad.mit.edu	37	chr14	64686021	64686021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaactctgatatcagcGccatcactacttggctgaaa	8	11	3	3	rs148199074	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64686021	T	T	64686021	3	4	115	1	0	0	0	0	1	0	0	0	15565	1087	38	3	20187	3	SYNE2	14	64686021	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	111728	64686021	42663519	281	108843											
HSPA2	3306	broad.mit.edu	37	chr14	65002478	65002478	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actcgaacttccagcccttgGagcagacatagggtttggtg	12	10	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65002478	C	C	65002478	1	2	115	0	1	0	0	0	0	0	0	0	7480	1189	41	4		4	HSPA2	14	65002478	5'Flank	SNP	G	TCGA-44-3398-01A-01D-1105-08	316457	65002478	42347062	282	108844											
SPTB	6710	broad.mit.edu	37	chr14	65268586	65268586	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacagtaagagctaagaatTagattttttgtagtcccaaa	7	5	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65268586	A	A	65268586	1	1	115	0	1	0	0	0	0	0	0	0	15236	1769	61	5		5	SPTB	14	65268586	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	266108	65268586	42080954	283	108845											
PGF	5228	broad.mit.edu	37	chr14	75412834	75412834	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagtcctgcctctccccCtccccaacctaaccctggcg	5	23	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75412834	T	T	75412834	1	4	115	0	1	0	0	0	0	0	0	0	11883	696	24	4		4	PGF	14	75412834	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	10144248	75412834	31936706	284	108846											
CDAN1	146059	broad.mit.edu	37	chr15	43020761	43020761	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaggaggcatgaagagaaGaaagggaaaaaagagtaagt	14	1	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43020761	A	A	43020761	1	1	115	0	1	0	0	0	0	0	0	0	3084	957	33	4		4	CDAN1	15	43020761	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08		43020761	59510631	285	108847											
MAP1A	4130	broad.mit.edu	37	chr15	43817874	43817874	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtaaagaatgaggctgtGaaacagcaggataaggcttt	12	5	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43817874	A	A	43817874	2	1	115	1	0	0	0	0	0	0	0	1	9319	1277	45	4		4	MAP1A	15	43817874	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	797113	43817874	58713518	286	108848											
PPIP5K1	9677	broad.mit.edu	37	chr15	43827053	43827054	+	Missense_Mutation	DNP	TC	AG	AG													ggatgacctcctcagggatcTcttcagctgggctgccaact							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	43827054	AG	AG	43827053	3	1	115	1	0	0	0	0	1	0	0	0	12433	1551	54	5	184	5	PPIP5K1	15	43827053	Missense_Mutation	DNP	TC	TCGA-44-3398-01A-01D-1105-08	9179	43827053	58704339	287	108849											
FBN1	2200	broad.mit.edu	37	chr15	48760510	48760510	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaatgtttaaatttctgTatcattcattttgcaaactt	5	5	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48760510	C	C	48760510	1	2	115	0	1	0	0	0	0	0	0	0	5759	1653	57	5		5	FBN1	15	48760510	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	4933457	48760510	53770882	288	108850											
ATP8B4	79895	broad.mit.edu	37	chr15	50223226	50223226	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaaaactatcacaaccctCagcacatagccaaaagtgaa	4	12	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50223226	G	G	50223226	1	3	115	0	1	0	0	0	0	0	0	0	1201	841	29	4		4	ATP8B4	15	50223226	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1462716	50223226	52308166	289	108851											
ITGA11	22801	broad.mit.edu	37	chr15	68695252	68695252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgggcggccgctctcaCtcaccacttattgccactga	11	14	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68695252	A	A	68695252	1	1	115	0	1	0	0	0	0	0	0	0	7944	580	20	3		3	ITGA11	15	68695252	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	18472026	68695252	33836140	290	108852											
CHRNB4	1143	broad.mit.edu	37	chr15	78927972	78927972	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgggcccttgtgcaccTgacccccactgcagcctgtg	11	17	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78927972	A	A	78927972	1	1	115	0	1	0	0	0	0	0	0	0	3424	1595	55	5		5	CHRNB4	15	78927972	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	10232720	78927972	23603420	291	108853											
TM6SF1	53346	broad.mit.edu	37	chr15	83795502	83795502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatgagtttatttttgtcCttagattgctttggattgcc	8	5	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83795502	A	A	83795502	1	1	115	0	1	0	0	0	0	0	0	0	16095	696	24	2		2	TM6SF1	15	83795502	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	4867530	83795502	18735890	292	108854											
IFT140	9742	broad.mit.edu	37	chr16	1639816	1639816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcactacatgaggaggCcctggtttatctgcttccat	12	10	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1639816	A	A	1639816	1	1	115	0	1	0	0	0	0	0	0	0	7626	754	26	3		3	IFT140	16	1639816	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08		1639816	88714937	293	108855											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1779329	1779329	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttttctagcatttgctgCcaggcttgaaggctgtcagc	10	12	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1779329	T	T	1779329	1	4	115	0	1	0	0	0	0	0	0	0	9378	754	26	4		4	MAPK8IP3	16	1779329	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	139513	1779329	88575424	294	108856											
ABCC1	4363	broad.mit.edu	37	chr16	16215882	16215882	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcgcctcgagtcggtcagCcgctccccggtctattccca	10	17	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16215882	T	T	16215882	2	4	115	1	0	0	0	0	0	0	0	1	49	738	26	4		4	ABCC1	16	16215882	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	14436553	16215882	74138871	295	108857											
ACSM2A	123876	broad.mit.edu	37	chr16	20481156	20481156	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacagcatgggactaggaaGagtgaagctgggaagaaata	15	4	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20481156	C	C	20481156	1	2	115	0	1	0	0	0	0	0	0	0	183	957	33	4		4	ACSM2A	16	20481156	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	4265274	20481156	69873597	296	108858											
DNAH3	55567	broad.mit.edu	37	chr16	21061251	21061251	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttagccaaggctttggCcaaatctttggtggtttctg	11	9	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21061251	T	T	21061251	3	4	115	1	0	0	0	0	1	0	0	0	4643	739	26	4	8154	4	DNAH3	16	21061251	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	580095	21061251	69293502	297	108859											
SCNN1B	6338	broad.mit.edu	37	chr16	23382700	23382700	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccggggtcaggctgatgcttCacgagcagaggtcatacccc	13	13	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23382700	G	G	23382700	3	3	115	1	0	0	0	0	1	0	0	0	14041	826	29	4	979	4	SCNN1B	16	23382700	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2321449	23382700	66972053	298	108860											
PALB2	79728	broad.mit.edu	37	chr16	23641517	23641517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagttcctctggaaaaataCagcttccctctttaagatgt	6	10	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23641517	A	A	23641517	3	1	115	1	0	0	0	0	1	0	0	0	11500	478	17	3	1638	3	PALB2	16	23641517	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	258817	23641517	66713236	299	108861											
NKD1	85407	broad.mit.edu	37	chr16	50642215	50642215	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcttgtaggagctcgtggGcgacgtgttgagagacacgc	15	9	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50642215	A	A	50642215	3	1	115	1	0	0	0	0	1	0	0	0	10536	1203	42	4	217	4	NKD1	16	50642215	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	27000698	50642215	39712538	300	108862											
CMTM1	113540	broad.mit.edu	37	chr16	66611142	66611142	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgactccatttaagatcagTattccaagactttgaaaagg	7	7	1	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66611142	A	A	66611142	1	1	115	0	1	0	0	0	0	0	0	0	3614	1653	57	5		5	CMTM1	16	66611142	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	15968927	66611142	23743611	301	108863											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67860331	67860331	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagagatgagctgatatcctCcctcctagggctatggggaa	12	10	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67860331	G	G	67860331	1	3	115	0	1	0	0	0	0	0	0	0	16757	870	30	4		4	TSNAXIP1	16	67860331	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1249189	67860331	22494422	302	108864											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67860420	67860420	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaagcaagaaggacgtggtCaacctcctcaaggatgcctg	11	12	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67860420	G	G	67860420	2	3	115	1	0	0	0	0	0	0	0	1	16757	813	29	4		4	TSNAXIP1	16	67860420	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	89	67860420	22494333	303	108865											
FTSJD1	55783	broad.mit.edu	37	chr16	71318373	71318373	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actcaagattggaagctgttCcttctaaaatagaactctgc	7	9	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71318373	G	G	71318373	3	3	115	1	0	0	0	0	1	0	0	0	6150	855	30	4	865	4	FTSJD1	16	71318373	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	3457953	71318373	19036380	304	108866											
HP	3240	broad.mit.edu	37	chr16	72088612	72088612	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctttatttcagtcttttTtgcatacatcggtagagatg	8	6	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72088612	A	A	72088612	1	1	115	0	1	0	0	0	0	0	0	0	7394	1856	64	5		5	HP	16	72088612	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	770239	72088612	18266141	305	108867											
ZFHX3	463	broad.mit.edu	37	chr16	72832636	72832636	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttaaaaaaaaaaaaaaaatCaaacccaaagataaagaagg	5	4	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72832636	A	A	72832636	1	1	115	0	1	0	0	0	0	0	0	0	17760	841	29	3		3	ZFHX3	16	72832636	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	744024	72832636	17522117	306	108868											
WWOX	51741	broad.mit.edu	37	chr16	78389319	78389319	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accatcctggctaacacggtGaaaccgtgtctctactaaaa	7	12	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78389319	A	A	78389319	1	1	115	0	1	0	0	0	0	0	0	0	17541	1305	45	4		4	WWOX	16	78389319	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	5556683	78389319	11965434	307	108869											
SLC38A8	146167	broad.mit.edu	37	chr16	84046578	84046578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatccggggcacacccagGgtgccacctcatcttaggga	12	14	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84046578	T	T	84046578	1	4	115	0	1	0	0	0	0	0	0	0	14724	1247	43	2		2	SLC38A8	16	84046578	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	5657259	84046578	6308175	308	108870											
TRPV3	162514	broad.mit.edu	37	chr17	3436156	3436156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcccgcgaggtgatgtccGtctgctcgtgctccatcagc	12	14	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3436156	T	T	3436156	3	4	115	1	0	0	0	0	1	0	0	0	16722	1145	40	3	1556	3	TRPV3	17	3436156	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08		3436156	77759054	309	108871											
ARRB2	409	broad.mit.edu	37	chr17	4621908	4621908	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accccgtcccaccccacagtGagacagtacgccgacatctg	8	18	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4621908	A	A	4621908	2	1	115	1	0	0	0	0	0	0	0	1	985	1304	45	4		4	ARRB2	17	4621908	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	1185752	4621908	76573302	310	108872											
SENP3	26168	broad.mit.edu	37	chr17	7474715	7474715	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaagcatctggccctgtctCagccattcagcttcacccag	8	16	4	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7474715	T	T	7474715	4	4	115	1	0	0	0	0	0	1	0	0	14161	827	29	4	1678	4	SENP3	17	7474715	Nonsense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2852807	7474715	73720495	311	108873											
MYH13	8735	broad.mit.edu	37	chr17	10209847	10209847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcctcatctagacggtGctgcaggtccttcaccgtct	9	14	5	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10209847	T	T	10209847	3	4	115	1	0	0	0	0	1	0	0	0	10126	1319	46	3	441	3	MYH13	17	10209847	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	2735132	10209847	70985363	312	108874											
MYH2	4620	broad.mit.edu	37	chr17	10429911	10429911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctctcatatctgtgcaCatacttggcctcctccagct	5	15	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10429911	A	A	10429911	1	1	115	0	1	0	0	0	0	0	0	0	10129	493	17	3		3	MYH2	17	10429911	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	220064	10429911	70765299	313	108875											
MYH2	4620	broad.mit.edu	37	chr17	10432095	10432095	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttctccagcttctgcttcActcgctgcaggttgtcaatc	7	15	4	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10432095	G	G	10432095	3	3	115	1	0	0	0	0	1	0	0	0	10129	159	6	5	2225	5	MYH2	17	10432095	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	2184	10432095	70763115	314	108876											
DNAH9	1770	broad.mit.edu	37	chr17	11547823	11547823	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgaagaagaaaggctctttCagggctgtttggaaacgagc	14	7	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11547823	G	G	11547823	1	3	115	0	1	0	0	0	0	0	0	0	4648	841	29	4		4	DNAH9	17	11547823	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1115728	11547823	69647387	315	108877											
MPRIP	23164	broad.mit.edu	37	chr17	17053516	17053516	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacgatgtcacagagtatcCagttcagagaaactatggct	9	8	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17053516	G	G	17053516	3	3	115	1	0	0	0	0	1	0	0	0	9837	594	21	4	1380	4	MPRIP	17	17053516	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	5505693	17053516	64141694	316	108878											
FAM83G	644815	broad.mit.edu	37	chr17	18881012	18881012	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggtccaacaaaggtccctCgggttatatggggggcactc	15	10	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18881012	T	T	18881012	3	4	115	1	0	0	0	0	1	0	0	0	5692	884	31	4	512	4	FAM83G	17	18881012	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	1827496	18881012	62314198	317	108879											
KIAA0100	9703	broad.mit.edu	37	chr17	26960091	26960091	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcccgcagagtgacactaTggtgatcatgggggttccca	15	10	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26960091	G	G	26960091	3	3	115	1	0	0	0	0	1	0	0	0	8224	1464	51	5	3113	5	KIAA0100	17	26960091	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	8079079	26960091	54235119	318	108880											
GGNBP2	79893	broad.mit.edu	37	chr17	34937810	34937810	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacagggtattagcagattgGaacaactttgtgaggaattt	11	4	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34937810	T	T	34937810	4	4	115	1	0	0	0	0	0	1	0	0	6423	1175	41	3	1087	3	GGNBP2	17	34937810	Nonsense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	7977719	34937810	46257400	319	108881											
ACACA	31	broad.mit.edu	37	chr17	35691747	35691747	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaagagtttctatggagaaTgcagcgtcccggaaatattg	12	7	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35691747	A	A	35691747	1	1	115	0	1	0	0	0	0	0	0	0	106	1479	51	5		5	ACACA	17	35691747	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	753937	35691747	45503463	320	108882											
CASC3	22794	broad.mit.edu	37	chr17	38296830	38296830	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccggcggcggcagcgcgcttCgcaagacaccgaggacgagg	17	14	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38296830	T	T	38296830	3	4	115	1	0	0	0	0	1	0	0	0	2687	893	31	4	31	4	CASC3	17	38296830	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2605083	38296830	42898380	321	108883											
TBX2	6909	broad.mit.edu	37	chr17	59480312	59480332	+	Intron	DEL	AGAGAGAGAGAGAGAGAGAGA	-	-													agagagagagagagagagagAgagagagagagagagagaga					rs140392356	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59480332	-	-	59480312	6	5	115	0	1	1	0	1	0	0	0	0	15777	319	11	0		0	TBX2	17	59480312	Intron	DEL	AGAGAGAGAGAGAGAGAGAGA	TCGA-44-3398-01A-01D-1105-08	21183482	59480312	21714898	322	108884											
ABCA6	23460	broad.mit.edu	37	chr17	67078904	67078904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaatccttttctgaggtcCctaacttttattatgaagcc	5	10	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67078904	A	A	67078904	1	1	115	0	1	0	0	0	0	0	0	0	36	638	22	2		2	ABCA6	17	67078904	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	7598592	67078904	14116306	323	108885											
USH1G	124590	broad.mit.edu	37	chr17	72915997	72915997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaacaccatggtgcccaGgccggggcgggtaaacaggg	18	11	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72915997	T	T	72915997	3	4	115	1	0	0	0	0	1	0	0	0	17161	991	35	2	459	2	USH1G	17	72915997	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	5837093	72915997	8279213	324	108886											
METTL4	64863	broad.mit.edu	37	chr18	2566837	2566837	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccttcccaataatagaaaTggagatttcttttttaacac	4	8	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2566837	C	C	2566837	3	2	115	1	0	0	0	0	1	0	0	0	9595	1464	51	5	1071	5	METTL4	18	2566837	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08		2566837	75510411	325	108887											
VAPA	9218	broad.mit.edu	37	chr18	9954222	9954222	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtagagtgaagcatgcaGagtgctgtttcttttttttt	10	5	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9954222	C	C	9954222	1	2	115	0	1	0	0	0	0	0	0	0	17248	957	33	4		4	VAPA	18	9954222	3'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	7387385	9954222	68123026	326	108888											
ANKRD30B	374860	broad.mit.edu	37	chr18	14779834	14779834	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagaagtggtggttgttatTcaatagaatatacaggctcc	10	5	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14779834	C	C	14779834	1	2	115	0	1	0	0	0	0	0	0	0	659	1798	62	5		5	ANKRD30B	18	14779834	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	4825612	14779834	63297414	327	108889											
NPC1	4864	broad.mit.edu	37	chr18	21118658	21118658	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcggagacatgcagggaggActgttagaagaataggtctc	16	6	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21118658	C	C	21118658	1	2	115	0	1	0	0	0	0	0	0	0	10665	290	10	5		5	NPC1	18	21118658	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08	6338824	21118658	56958590	328	108890											
KIAA1012	22878	broad.mit.edu	37	chr18	29410976	29410976	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaggaggaaaatgtaagTtgcaggatttttttcttttt	12	2	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29410976	C	C	29410976	1	2	115	0	1	0	0	0	0	0	0	0	8274	1740	60	5		5	KIAA1012	18	29410976	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	8292318	29410976	48666272	329	108891											
KIAA1632	57724	broad.mit.edu	37	chr18	43496396	43496396	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttaggggcttgcaaggCcctcacctggatcatgctgt	13	11	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43496396	T	T	43496396	1	4	115	0	1	0	0	0	0	0	0	0	8319	754	26	4		4	KIAA1632	18	43496396	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	14085420	43496396	34580852	330	108892											
CXXC1	30827	broad.mit.edu	37	chr18	47810363	47810363	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaggcgagtgcgggcactCtgctgctctcggcgaatgcg	16	11	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47810363	G	G	47810363	3	3	115	1	0	0	0	0	1	0	0	0	4130	912	32	4	680	4	CXXC1	18	47810363	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4313967	47810363	30266885	331	108893											
NEDD4L	23327	broad.mit.edu	37	chr18	55996303	55996303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accggcgcttccgctcccgcAggcacatcagcgaagacttg	11	16	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55996303	T	T	55996303	3	4	115	1	0	0	0	0	1	0	0	0	10406	179	7	5	823	5	NEDD4L	18	55996303	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	8185940	55996303	22080945	332	108894											
PHLPP1	23239	broad.mit.edu	37	chr18	60505965	60505965	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcatagttagtgaaatacatCagtggttctgctgtctgact	10	7	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60505965	G	G	60505965	1	3	115	0	1	0	0	0	0	0	0	0	11949	841	29	4		4	PHLPP1	18	60505965	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	4509662	60505965	17571283	333	108895											
PHLPP1	23239	broad.mit.edu	37	chr18	60646292	60646292	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggccagtgatgagggCattgtcatcagcgccaacga	14	10	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60646292	T	T	60646292	2	4	115	1	0	0	0	0	0	0	0	1	11949	697	25	4		4	PHLPP1	18	60646292	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	140327	60646292	17430956	334	108896											
ZNF407	55628	broad.mit.edu	37	chr18	72775242	72775242	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctcagaagcagcaggagGccagcgccgccccctgagca	12	18	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72775242	T	T	72775242	3	4	115	1	0	0	0	0	1	0	0	0	18014	1194	42	3	5725	3	ZNF407	18	72775242	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	12128950	72775242	5302006	335	108897											
SEMA6B	10501	broad.mit.edu	37	chr19	4558145	4558145	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccgctgcccacaaacacGggatagtggttcaggtctga	13	12	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4558145	A	A	4558145	2	1	115	1	0	0	0	0	0	0	0	1	14153	1103	39	4		4	SEMA6B	19	4558145	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08		4558145	54570838	336	108898											
HSD11B1L	374875	broad.mit.edu	37	chr19	5687275	5687275	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccgcctctgccggtgactCgcgagtgccgcctgcaggta	13	16	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5687275	T	T	5687275	1	4	115	0	1	0	0	0	0	0	0	0	7443	899	31	4		4	HSD11B1L	19	5687275	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1129130	5687275	53441708	337	108899											
EMR1	2015	broad.mit.edu	37	chr19	6928183	6928183	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaatacagagacagggttCatctggagtttcttggggcc	13	8	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6928183	T	T	6928183	2	4	115	1	0	0	0	0	0	0	0	1	5146	825	29	4		4	EMR1	19	6928183	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	1240908	6928183	52200800	338	108900											
MUC16	94025	broad.mit.edu	37	chr19	8971676	8971676	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccaccccaccttgtacCtgtcacatggatgtccacca	6	18	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8971676	T	T	8971676	3	4	115	1	0	0	0	0	1	0	0	0	10067	695	24	4	635	4	MUC16	19	8971676	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2043493	8971676	50157307	339	108901											
MUC16	94025	broad.mit.edu	37	chr19	9076466	9076466	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaaggactcaatgttctTtcacttgtactggtctctgt	8	9	5	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9076466	C	C	9076466	2	2	115	1	0	0	0	0	0	0	0	1	10067	1838	64	5		5	MUC16	19	9076466	Silent	SNP	T	TCGA-44-3398-01A-01D-1105-08	104790	9076466	50052517	340	108902											
IL27RA	9466	broad.mit.edu	37	chr19	14153285	14153285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaccggagctgaagacCatacccctgacccctgttga	10	14	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14153285	A	A	14153285	2	1	115	1	0	0	0	0	0	0	0	1	7751	581	21	2		2	IL27RA	19	14153285	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	5076819	14153285	44975698	341	108903											
CYP4F3	4051	broad.mit.edu	37	chr19	15769378	15769378	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgaggtgcgggcccccCgtctctgtttttgtccattc	10	15	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15769378	T	T	15769378	1	4	115	0	1	0	0	0	0	0	0	0	4223	667	23	4		4	CYP4F3	19	15769378	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1616093	15769378	43359605	342	108904											
OR10H5	284433	broad.mit.edu	37	chr19	15904894	15904894	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacctccgtgtctgaattCatcctcgttggcttctctgc	7	15	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15904894	T	T	15904894	2	4	115	1	0	0	0	0	0	0	0	1	11003	825	29	4		4	OR10H5	19	15904894	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	135516	15904894	43224089	343	108905											
TSHZ3	57616	broad.mit.edu	37	chr19	31768037	31768037	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcccttcctcttctgggCgggcgtcgactcctcagcct	12	17	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768037	T	T	31768037	3	4	115	1	0	0	0	0	1	0	0	0	16750	768	27	4	587	4	TSHZ3	19	31768037	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	15863143	31768037	27360946	344	108906											
DPF1	8193	broad.mit.edu	37	chr19	38709528	38709528	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctggtggcaggcaggggtGagacgaagccatgcagcggg	21	8	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38709528	A	A	38709528	1	1	115	0	1	0	0	0	0	0	0	0	4756	1305	45	4		4	DPF1	19	38709528	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	6941491	38709528	20419455	345	108907											
CATSPERG	57828	broad.mit.edu	37	chr19	38853047	38853047	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcttggcgagcaattggcGaagcgcgggcggcgtgtcca	16	11	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38853047	A	A	38853047	3	1	115	1	0	0	0	0	1	0	0	0	2718	1058	37	4	2259	4	CATSPERG	19	38853047	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	143519	38853047	20275936	346	108908											
RYR1	6261	broad.mit.edu	37	chr19	38976304	38976304	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacaccctgcgcctctaccGcgctgtgtgcgccctgggca	12	18	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38976304	A	A	38976304	3	1	115	1	0	0	0	0	1	0	0	0	13879	1087	38	4	5143	4	RYR1	19	38976304	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	123257	38976304	20152679	347	108909											
RYR1	6261	broad.mit.edu	37	chr19	39019689	39019689	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagccgcactgccctgacGgaaaagaggtgaagactctt	11	11	2	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39019689	C	C	39019689	2	2	115	1	0	0	0	0	0	0	0	1	13879	1103	39	4		4	RYR1	19	39019689	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	43385	39019689	20109294	348	108910											
PSG4	5672	broad.mit.edu	37	chr19	43699270	43699270	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggatcctgttttcaatggGtcgctttaccctgggactga	12	9	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43699270	C	C	43699270	3	2	115	1	0	0	0	0	1	0	0	0	12763	1261	44	4	406	4	PSG4	19	43699270	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	4679581	43699270	15429713	349	108911											
PSG4	5672	broad.mit.edu	37	chr19	43708039	43708039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatgtggaatcactcacgGtgtaaggtgaaggtgaaatg	13	5	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43708039	T	T	43708039	3	4	115	1	0	0	0	0	1	0	0	0	12763	1275	44	3	850	3	PSG4	19	43708039	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	8769	43708039	15420944	350	108912											
PSG4	5672	broad.mit.edu	37	chr19	43708174	43708174	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcattggaatatactctttcTcttccactgtatgcaggccc	7	12	2	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43708174	A	A	43708174	3	1	115	1	0	0	0	0	1	0	0	0	12763	1548	54	5	985	5	PSG4	19	43708174	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	135	43708174	15420809	351	108913											
MYPOP	339344	broad.mit.edu	37	chr19	46393833	46393833	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcgcccccctcgactgCgccaagctggggagaggggt	15	14	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46393833	A	A	46393833	1	1	115	0	1	0	0	0	0	0	0	0	10193	783	27	3		3	MYPOP	19	46393833	3'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	2685659	46393833	12735150	352	108914											
CCDC8	83987	broad.mit.edu	37	chr19	46915990	46915990	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggtggcgggcttagagatGactctccagacgcccccagc	13	13	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46915990	C	C	46915990	2	2	115	1	0	0	0	0	0	0	0	1	2881	1277	45	4		4	CCDC8	19	46915990	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	522157	46915990	12212993	353	108915											
DHX34	9704	broad.mit.edu	37	chr19	47870329	47870329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccgccatcctctacctccGggaccagggggccctggaca	11	17	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47870329	T	T	47870329	3	4	115	1	0	0	0	0	1	0	0	0	4547	1116	39	1	1707	1	DHX34	19	47870329	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	954339	47870329	11258654	354	108916											
NTN5	126147	broad.mit.edu	37	chr19	49172581	49172581	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaccatcaccaccaccaTcaccaccaccaccatcacca	0	24	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49172581	C	C	49172581	1	2	115	0	1	0	0	0	0	0	0	0	10798	1450	50	5		5	NTN5	19	49172581	Intron	SNP	T	TCGA-44-3398-01A-01D-1105-08	1302252	49172581	9956402	355	108917											
RASIP1	54922	broad.mit.edu	37	chr19	49223941	49223941	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgaaaactcaatctcccaAcattccacgcgggataagaa	6	14	2	1	rs77294797	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49223941	T	T	49223941	1	4	115	0	1	0	0	0	0	0	0	0	13186	58	2	5		5	RASIP1	19	49223941	3'UTR	SNP	A	TCGA-44-3398-01A-01D-1105-08	51360	49223941	9905042	356	108918											
FUZ	80199	broad.mit.edu	37	chr19	50314903	50314903	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaccctcaagtccttcttCagtctctccacgttgcggat	6	16	5	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50314903	T	T	50314903	2	4	115	1	0	0	0	0	0	0	0	1	6172	813	29	4		4	FUZ	19	50314903	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	1090962	50314903	8814080	357	108919											
CD33	945	broad.mit.edu	37	chr19	51728706	51728706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggagactcagggcagattCcgcctccttggggatcccag	14	12	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51728706	A	A	51728706	3	1	115	1	0	0	0	0	1	0	0	0	3035	854	30	3	276	3	CD33	19	51728706	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	1413803	51728706	7400277	358	108920											
LILRA2	11027	broad.mit.edu	37	chr19	55086420	55086420	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcccgagtcgcaggtggtCgtacaggtgctatgcttatg	15	9	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55086420	T	T	55086420	3	4	115	1	0	0	0	0	1	0	0	0	8857	893	31	4	589	4	LILRA2	19	55086420	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	3357714	55086420	4042563	359	108921											
NLRP2	55655	broad.mit.edu	37	chr19	55481503	55481503	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccctggcacacgagctccaGaagatcccccacaaggaggt	10	15	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55481503	A	A	55481503	2	1	115	1	0	0	0	0	0	0	0	1	10572	933	33	4		4	NLRP2	19	55481503	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	395083	55481503	3647480	360	108922											
NLRP4	147945	broad.mit.edu	37	chr19	56382295	56382295	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacctcagtgccaatgtcctGaaggacgaaggactgaaaac	11	10	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56382295	T	T	56382295	2	4	115	1	0	0	0	0	0	0	0	1	10574	1277	45	3		3	NLRP4	19	56382295	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	900792	56382295	2746688	361	108923											
ZNF667	63934	broad.mit.edu	37	chr19	56952614	56952614	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcccacatttactacattCatagggtttctctgaagaat	5	10	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56952614	G	G	56952614	3	3	115	1	0	0	0	0	1	0	0	0	18201	835	29	4	86	4	ZNF667	19	56952614	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	570319	56952614	2176369	362	108924											
ZNF17	7565	broad.mit.edu	37	chr19	57930986	57930986	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagtcatcatgcacttcatGagcatttctgttttaggttg	8	7	4	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57930986	A	A	57930986	1	1	115	0	1	0	0	0	0	0	0	0	17869	1305	45	4		4	ZNF17	19	57930986	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	978372	57930986	1197997	363	108925											
ZNF135	7694	broad.mit.edu	37	chr19	58578646	58578646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacaccagagaatccataCtggggagaaaccctataaat	7	10	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58578646	A	A	58578646	3	1	115	1	0	0	0	0	1	0	0	0	17851	565	20	3	997	3	ZNF135	19	58578646	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	647660	58578646	550337	364	108926											
A1BG	1	broad.mit.edu	37	chr19	58858351	58858351	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtccagaatccccggcacttCtgaggacaccaacagcaccc	8	17	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58858351	G	G	58858351	1	3	115	0	1	0	0	0	0	0	0	0	1	928	32	4		4	A1BG	19	58858351	3'UTR	SNP	C	TCGA-44-3398-01A-01D-1105-08	279705	58858351	270632	365	108927											
ANGPT4	51378	broad.mit.edu	37	chr20	854795	854795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagccaggtgagcttatGggtgggcaaggcccagacct	15	11	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	854795	T	T	854795	1	4	115	0	1	0	0	0	0	0	0	0	612	1363	47	2		2	ANGPT4	20	854795	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08		854795	62170725	366	108928											
SIRPA	140885	broad.mit.edu	37	chr20	1902395	1902395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccaagcccacacctgaCcgccaagcccaccccccacc	5	25	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1902395	A	A	1902395	1	1	115	0	1	0	0	0	0	0	0	0	14445	522	18	3		3	SIRPA	20	1902395	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1047600	1902395	61123125	367	108929											
UBOX5	22888	broad.mit.edu	37	chr20	3102775	3102775	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagatccttaagtgggcCacgtggctaagggaaagagc	13	8	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3102775	A	A	3102775	2	1	115	1	0	0	0	0	0	0	0	1	17020	581	21	2		2	UBOX5	20	3102775	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	1200380	3102775	59922745	368	108930											
XRN2	22803	broad.mit.edu	37	chr20	21346035	21346035	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgatataatcagatcattGaattgtttcttgttcttttc	6	6	4	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21346035	A	A	21346035	1	1	115	0	1	0	0	0	0	0	0	0	17587	1305	45	4		4	XRN2	20	21346035	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	18243260	21346035	41679485	369	108931											
BPIL1	80341	broad.mit.edu	37	chr20	31607499	31607499	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcggctgcagcccttcgtGgaggtcctggccacagcctc	13	16	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31607499	T	T	31607499	2	4	115	1	0	0	0	0	0	0	0	1	1500	1335	47	2		2	BPIL1	20	31607499	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	10261464	31607499	31418021	370	108932											
ZNF341	84905	broad.mit.edu	37	chr20	32354597	32354597	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggagcacggagtaggggttCtgtgcatccttcctgaatgg	15	8	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32354597	T	T	32354597	1	4	115	0	1	0	0	0	0	0	0	0	17983	928	32	4		4	ZNF341	20	32354597	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	747098	32354597	30670923	371	108933											
KIAA1755	85449	broad.mit.edu	37	chr20	36869715	36869715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaggagagccacatagtctCcctcgaagtcctggctgacc	10	14	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36869715	A	A	36869715	3	1	115	1	0	0	0	0	1	0	0	0	8327	855	30	3	2832	3	KIAA1755	20	36869715	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4515118	36869715	26155805	372	108934											
PPP1R16B	26051	broad.mit.edu	37	chr20	37531189	37531189	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgatctatgggcatgtctGcatgcccgcttgactggcat	11	10	2	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37531189	A	A	37531189	1	1	115	0	1	0	0	0	0	0	0	0	12467	1334	46	4		4	PPP1R16B	20	37531189	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	661474	37531189	25494331	373	108935											
CHD6	84181	broad.mit.edu	37	chr20	40053841	40053841	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttgggcttccttgttgatGaggtccatttctgaggttct	11	7	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40053841	A	A	40053841	2	1	115	1	0	0	0	0	0	0	0	1	3360	1277	45	4		4	CHD6	20	40053841	Silent	SNP	G	TCGA-44-3398-01A-01D-1105-08	2522652	40053841	22971679	374	108936											
DDX27	55661	broad.mit.edu	37	chr20	47860161	47860161	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcagcatgtcatcttctctCacagcccttcctttgaagaa	5	13	5	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47860161	T	T	47860161	1	4	115	0	1	0	0	0	0	0	0	0	4387	841	29	4		4	DDX27	20	47860161	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	7806320	47860161	15165359	375	108937											
TAF4	6874	broad.mit.edu	37	chr20	60587990	60587990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgataggtgttccaggtgCctgaaaaataagcagagtca	11	6	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60587990	A	A	60587990	3	1	115	1	0	0	0	0	1	0	0	0	15645	753	26	3	1787	3	TAF4	20	60587990	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	12727829	60587990	2437530	376	108938											
COL9A3	1299	broad.mit.edu	37	chr20	61459170	61459170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgggggtggcccctgccGctgcccaccatagctccttg	14	16	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61459170	T	T	61459170	1	4	115	0	1	0	0	0	0	0	0	0	3741	1102	38	3		3	COL9A3	20	61459170	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	871180	61459170	1566350	377	108939											
NPBWR2	2832	broad.mit.edu	37	chr20	62737699	62737699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggctggcgaccttcgcCccccggtaggtgcgccaggg	15	16	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62737699	A	A	62737699	2	1	115	1	0	0	0	0	0	0	0	1	10664	610	22	2		2	NPBWR2	20	62737699	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	1278529	62737699	287821	378	108940											
TPTE	7179	broad.mit.edu	37	chr21	11013061	11013061	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatacttatatatgattaaAatttctgtttctatagtcat	3	5	3	1	rs9550298		TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11013061	C	C	11013061	1	2	115	0	1	0	0	0	0	0	0	0	16554	29	1	5		5	TPTE	21	11013061	Intron	SNP	A	TCGA-44-3398-01A-01D-1105-08		11013061	37116834	379	108941											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31797938	31797938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatccaaaaccccgagacCcaacatgcatagtcaggcaa	8	13	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31797938	A	A	31797938	3	1	115	1	0	0	0	0	1	0	0	0	8595	623	22	2	229	2	KRTAP13-3	21	31797938	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	20784877	31797938	16331957	380	108942											
PCBP3	54039	broad.mit.edu	37	chr21	47350837	47350837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggaggtgtgggggccCtgccgctgcagcagtttcca	18	10	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47350837	A	A	47350837	1	1	115	0	1	0	0	0	0	0	0	0	11596	696	24	2		2	PCBP3	21	47350837	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	15552899	47350837	779058	381	108943											
CRYBA4	1413	broad.mit.edu	37	chr22	27024278	27024278	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtgactcgaggctgacaatCttcgagcaagagaacttcct	10	11	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27024278	A	A	27024278	2	1	115	1	0	0	0	0	0	0	0	1	3941	903	32	3		3	CRYBA4	22	27024278	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08		27024278	24280288	382	108944											
MYH9	4627	broad.mit.edu	37	chr22	36678573	36678573	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacacctggagggaaacggGatggggggacggggcggagg	22	7	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36678573	A	A	36678573	1	1	115	0	1	0	0	0	0	0	0	0	10136	1189	41	4		4	MYH9	22	36678573	3'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	9654295	36678573	14625993	383	108945											
ELFN2	114794	broad.mit.edu	37	chr22	37771375	37771375	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagtagagcacggctttgAgcttgttctcgttgagccgc	14	9	1	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37771375	C	C	37771375	3	2	115	1	0	0	0	0	1	0	0	0	5100	304	11	5	2266	5	ELFN2	22	37771375	Missense_Mutation	SNP	A	TCGA-44-3398-01A-01D-1105-08	1092802	37771375	13533191	384	108946											
POLR2F	5435	broad.mit.edu	37	chr22	38352657	38352657	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtcttgaattcctggcctCaagtgatccgcccacttcaa	8	13	3	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38352657	G	G	38352657	1	3	115	0	1	0	0	0	0	0	0	0	12314	841	29	4		4	POLR2F	22	38352657	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	581282	38352657	12951909	385	108947											
CACNA1I	8911	broad.mit.edu	37	chr22	40030822	40030822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaatcaggaccaatggGgtagaagcagcaaaaaaaga	13	5	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40030822	T	T	40030822	1	4	115	0	1	0	0	0	0	0	0	0	2572	1247	43	2		2	CACNA1I	22	40030822	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1678165	40030822	11273744	386	108948											
CACNA1I	8911	broad.mit.edu	37	chr22	40037181	40037181	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggttatgcttggattgtcatCttccaggtgaggccattcag	12	8	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40037181	A	A	40037181	2	1	115	1	0	0	0	0	0	0	0	1	2572	903	32	3		3	CACNA1I	22	40037181	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	6359	40037181	11267385	387	108949											
TOB2	10766	broad.mit.edu	37	chr22	41832839	41832839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaaggtgatgggctgagCggagcggggaatgaaggtag	22	3	0	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41832839	A	A	41832839	3	1	115	1	0	0	0	0	1	0	0	0	16471	768	27	3	527	3	TOB2	22	41832839	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	1795658	41832839	9471727	388	108950											
NAGA	4668	broad.mit.edu	37	chr22	42461775	42461775	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagtgcccagggccggcCactggctgcagtatgtcctg	13	14	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42461775	T	T	42461775	2	4	115	1	0	0	0	0	0	0	0	1	10235	581	21	4		4	NAGA	22	42461775	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	628936	42461775	8842791	389	108951											
TCF20	6942	broad.mit.edu	37	chr22	42610599	42610599	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaggaggaggaggaagcaGaagactgatagtgttggcca	18	4	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42610599	C	C	42610599	3	2	115	1	0	0	0	0	1	0	0	0	15812	942	33	4	5207	4	TCF20	22	42610599	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	148824	42610599	8693967	390	108952											
TTC38	55020	broad.mit.edu	37	chr22	46671251	46671251	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttatttttacctgggctatCaggaacagatgagagattct	9	7	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46671251	T	T	46671251	4	4	115	1	0	0	0	0	0	1	0	0	16832	827	29	4	490	4	TTC38	22	46671251	Nonsense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4060652	46671251	4633315	391	108953											
ZBED4	9889	broad.mit.edu	37	chr22	50277426	50277426	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctcctgatagtttggaaaGaatggactttaaaagcgagc	10	7	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50277426	C	C	50277426	3	2	115	1	0	0	0	0	1	0	0	0	17646	942	33	4	118	4	ZBED4	22	50277426	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	3606175	50277426	1027140	392	108954											
PLXNB2	23654	broad.mit.edu	37	chr22	50722939	50722940	+	Intron	INS	-	C	C													cctcacagtcctgaaggtgaINSccccccaccccacccggggc					rs146267024	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50722940	C	C	50722939	6	5	115	0	1	1	1	0	0	0	0	0	12219	290	10	0		0	PLXNB2	22	50722939	Intron	INS	-	TCGA-44-3398-01A-01D-1105-08	445513	50722939	581627	393	108955											
FAM9B	171483	broad.mit.edu	37	chrX	9001120	9001120	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggcgatccccgaacctgGtgagcgcaaagacacactaa	11	12	0	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9001120	A	A	9001120	1	1	115	0	1	0	0	0	0	0	0	0	5717	1276	44	4		4	FAM9B	23	9001120	5'Flank	SNP	G	TCGA-44-3398-01A-01D-1105-08		9001120	146269440	394	108956											
REPS2	9185	broad.mit.edu	37	chrX	17167141	17167141	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatcaatagcttaatggcAgaggataaaggctcaaacag	9	6	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17167141	G	G	17167141	1	3	115	0	1	0	0	0	0	0	0	0	13337	203	7	5		5	REPS2	23	17167141	3'UTR	SNP	A	TCGA-44-3398-01A-01D-1105-08	8166021	17167141	138103419	395	108957											
SCML2	10389	broad.mit.edu	37	chrX	18264985	18264985	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaggaggctatcttcaataGacttacaattcaaatactac	5	8	3	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18264985	C	C	18264985	1	2	115	0	1	0	0	0	0	0	0	0	14023	957	33	4		4	SCML2	23	18264985	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	1097844	18264985	137005575	396	108958											
CDKL5	6792	broad.mit.edu	37	chrX	18643179	18643179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtttggttctcctcttgGgtgtggttgcatatcttaat	10	6	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18643179	T	T	18643179	1	4	115	0	1	0	0	0	0	0	0	0	3187	1247	43	2		2	CDKL5	23	18643179	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	378194	18643179	136627381	397	108959											
MBTPS2	51360	broad.mit.edu	37	chrX	21887672	21887672	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaccttgtcacccatctAcaggattgtcctgttactaa	8	11	2	1	rs144578691	byFrequency	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21887672	G	G	21887672	2	3	115	1	0	0	0	0	0	0	0	1	9455	378	14	5		5	MBTPS2	23	21887672	Silent	SNP	A	TCGA-44-3398-01A-01D-1105-08	3244493	21887672	133382888	398	108960											
PRDX4	10549	broad.mit.edu	37	chrX	23685884	23685884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacccgggagaggcatcccGggtatcggtcgccgaccact	14	14	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23685884	T	T	23685884	3	4	115	1	0	0	0	0	1	0	0	0	12573	1116	39	1	199	1	PRDX4	23	23685884	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1798212	23685884	131584676	399	108961											
MAGEB1	4112	broad.mit.edu	37	chrX	30269436	30269436	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattcctatggggtccgagaGcctatgctgaaaccaccaag	10	11	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30269436	C	C	30269436	3	2	115	1	0	0	0	0	1	0	0	0	9264	971	34	4	828	4	MAGEB1	23	30269436	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	6583552	30269436	125001124	400	108962											
USP11	8237	broad.mit.edu	37	chrX	47101795	47101795	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcttgcattaactcacCacaagcccttttggtctttt	6	12	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47101795	T	T	47101795	1	4	115	0	1	0	0	0	0	0	0	0	17168	609	21	4		4	USP11	23	47101795	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	16832359	47101795	108168765	401	108963											
HDAC6	10013	broad.mit.edu	37	chrX	48678431	48678431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatttgtccttttctcCatgtctctgggtcgccatca	6	13	5	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48678431	A	A	48678431	1	1	115	0	1	0	0	0	0	0	0	0	7078	609	21	2		2	HDAC6	23	48678431	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	1576636	48678431	106592129	402	108964											
WDR45	11152	broad.mit.edu	37	chrX	48932788	48932788	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaccaaggggctgttccCactcaccaatgacagagttg	9	14	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48932788	T	T	48932788	1	4	115	0	1	0	0	0	0	0	0	0	17424	609	21	4		4	WDR45	23	48932788	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	254357	48932788	106337772	403	108965											
SYP	6855	broad.mit.edu	37	chrX	49047927	49047927	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggaggtgggtgcaccCtgcgggccgtagccttgctg	18	10	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49047927	G	G	49047927	3	3	115	1	0	0	0	0	1	0	0	0	15580	680	24	4	36	4	SYP	23	49047927	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	115139	49047927	106222633	404	108966											
AKAP4	8852	broad.mit.edu	37	chrX	49958059	49958059	+	Silent	SNP	T	A	A													ttagtctccttctcctcaccTataagggcactgaccaagcg							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49958059	A	A	49958059	2	1	115	1	0	0	0	0	0	0	0	1	453	1512	53	5		5	AKAP4	23	49958059	Silent	SNP	T	TCGA-44-3398-01A-01D-1105-08	910132	49958059	105312501	405	108967	470	2									
AKAP4	8852	broad.mit.edu	37	chrX	49958061	49958061	+	Missense_Mutation	SNP	T	A	A													agtctccttctcctcacctaTaagggcactgaccaagcgct							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49958061	A	A	49958061	3	1	115	1	0	0	0	0	1	0	0	0	453	1406	49	5	1269	5	AKAP4	23	49958061	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	2	49958061	105312499	406	108968	470	2									
SPANXN5	494197	broad.mit.edu	37	chrX	52825631	52825631	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttttcatctttttcaaaCtcggttcgaggactaagtcc	7	9	3	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825631	T	T	52825631	3	4	115	1	0	0	0	0	1	0	0	0	15110	565	20	4	106	4	SPANXN5	23	52825631	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	2867570	52825631	102444929	407	108969											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	115	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-44-3398-01A-01D-1105-08	827216	53652847	101617713	408	108970											
FAM123B	139285	broad.mit.edu	37	chrX	63411089	63411089	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacggaagtccctccagtctGgctcgctgcttgcagtggtg	14	12	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63411089	C	C	63411089	3	2	115	1	0	0	0	0	1	0	0	0	5469	1348	47	4	1333	4	FAM123B	23	63411089	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	9758242	63411089	91859471	409	108971											
FAM123B	139285	broad.mit.edu	37	chrX	63412785	63412785	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgggcactctgagagctggGaaattggcagggtaactcag	15	7	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63412785	A	A	63412785	3	1	115	1	0	0	0	0	1	0	0	0	5469	1174	41	4	3029	4	FAM123B	23	63412785	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1696	63412785	91857775	410	108972											
PJA1	64219	broad.mit.edu	37	chrX	68381829	68381829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggcactagcaccggggCcagggctggtgccagtgctg	16	13	0	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68381829	A	A	68381829	3	1	115	1	0	0	0	0	1	0	0	0	12056	739	26	3	682	3	PJA1	23	68381829	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	4969044	68381829	86888731	411	108973											
MED12	9968	broad.mit.edu	37	chrX	70340930	70340930	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggttccacgatagggccCttgccccatgatgtagaggt	13	10	0	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70340930	A	A	70340930	2	1	115	1	0	0	0	0	0	0	0	1	9521	668	24	2		2	MED12	23	70340930	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	1959101	70340930	84929630	412	108974											
LPAR4	2846	broad.mit.edu	37	chrX	78010375	78010375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaagtccatgggtgaCagaagattcattgacttcca	8	7	1	4			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78010375	A	A	78010375	3	1	115	1	0	0	0	0	1	0	0	0	8994	477	17	3	11	3	LPAR4	23	78010375	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	7669445	78010375	77260185	413	108975											
KLHL4	56062	broad.mit.edu	37	chrX	86888699	86888699	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcaaaatgaaacaatattCagtgtgtggcatacctaggt	9	6	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86888699	A	A	86888699	1	1	115	0	1	0	0	0	0	0	0	0	8462	841	29	3		3	KLHL4	23	86888699	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	8878324	86888699	68381861	414	108976											
PCDH11X	27328	broad.mit.edu	37	chrX	91134239	91134239	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctatccagtgacgacCttcgaggtacctgtgtccgt	12	11	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91134239	A	A	91134239	2	1	115	1	0	0	0	0	0	0	0	1	11602	668	24	2		2	PCDH11X	23	91134239	Silent	SNP	C	TCGA-44-3398-01A-01D-1105-08	4245540	91134239	64136321	415	108977											
SRPX2	27286	broad.mit.edu	37	chrX	99917179	99917179	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctattgctacagtcccccGatggtgttatacattaaata	6	9	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99917179	A	A	99917179	3	1	115	1	0	0	0	0	1	0	0	0	15283	1058	37	4	180	4	SRPX2	23	99917179	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	8782940	99917179	55353381	416	108978											
BTK	695	broad.mit.edu	37	chrX	100617167	100617167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccctgtatacctggtcCtcctcaggcgttgggggaag	13	11	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100617167	A	A	100617167	3	1	115	1	0	0	0	0	1	0	0	0	1567	680	24	2	1449	2	BTK	23	100617167	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	699988	100617167	54653393	417	108979											
NXF5	55998	broad.mit.edu	37	chrX	101092628	101092628	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagcttcctctgcaggtcTatagagaagaagagaagcaa	11	8	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101092628	A	A	101092628	5	1	115	1	0	0	0	0	0	0	1	0	10881	1536	53	5	187	5	NXF5	23	101092628	Splice_Site	SNP	T	TCGA-44-3398-01A-01D-1105-08	475461	101092628	54177932	418	108980											
COL4A6	1288	broad.mit.edu	37	chrX	107400454	107400454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggagccaggtgagaccaGggactggcctccaccctcgg	15	14	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107400454	T	T	107400454	3	4	115	1	0	0	0	0	1	0	0	0	3727	991	35	2	227	2	COL4A6	23	107400454	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	6307826	107400454	47870106	419	108981											
IRS4	8471	broad.mit.edu	37	chrX	107978239	107978239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttcggggcttctgcagGgtgccggggacgtgctgggc	19	9	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107978239	T	T	107978239	3	4	115	1	0	0	0	0	1	0	0	0	7912	1232	43	2	2441	2	IRS4	23	107978239	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	577785	107978239	47292321	420	108982											
AMMECR1	9949	broad.mit.edu	37	chrX	109459811	109459811	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacactgagcagaaaagccGtggcagctcatcccttgtca	10	12	2	3			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109459811	C	C	109459811	3	2	115	1	0	0	0	0	1	0	0	0	578	1144	40	4	383	4	AMMECR1	23	109459811	Missense_Mutation	SNP	G	TCGA-44-3398-01A-01D-1105-08	1481572	109459811	45810749	421	108983											
AMOT	154796	broad.mit.edu	37	chrX	112048142	112048143	+	Intron	DNP	CC	AA	AA													gatttcccagccctcccaccCccaggctcatatgctacctg							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	112048143	AA	AA	112048142	1	1	115	0	1	0	0	0	0	0	0	0	582	638	22	2		2	AMOT	23	112048142	Intron	DNP	CC	TCGA-44-3398-01A-01D-1105-08	2588331	112048142	43222418	422	108984											
LONRF3	79836	broad.mit.edu	37	chrX	118124392	118124392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtactatctatgaaaccGgggtggctccagcgctgact	12	10	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118124392	T	T	118124392	1	4	115	0	1	0	0	0	0	0	0	0	8983	1131	39	1		1	LONRF3	23	118124392	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	6076250	118124392	37146168	423	108985											
KIAA1210	57481	broad.mit.edu	37	chrX	118284472	118284472	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggcccaggtgagccaggTaggggtgccggccaggaagg	21	9	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-10A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118284472	C	C	118284472	3	2	115	1	0	0	0	0	1	0	0	0	8284	1638	57	5	5114	5	KIAA1210	23	118284472	Missense_Mutation	SNP	T	TCGA-44-3398-01A-01D-1105-08	160080	118284472	36986088	424	108986											
SLC25A5	292	broad.mit.edu	37	chrX	118604231	118604231	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctaaaggaagccaagatCatccaatgcaacccttgtgt	8	10	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118604231	A	A	118604231	1	1	115	0	1	0	0	0	0	0	0	0	14626	841	29	3		3	SLC25A5	23	118604231	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	319759	118604231	36666329	425	108987											
GRIA3	2892	broad.mit.edu	37	chrX	122318381	122318381	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgtcagcttcgttttaGgcgtacatggccaggcagaa	11	10	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122318381	T	T	122318381	1	4	115	1	0	0	0	0	0	0	0	0	6835	1015	35	2		2	GRIA3	23	122318381	Translation_Start_Site	SNP	G	TCGA-44-3398-01A-01D-1105-08	3714150	122318381	32952179	426	108988											
IGSF1	3547	broad.mit.edu	37	chrX	130408770	130408770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcaacacctggcaggggtCctcggcactgaagggtgatg	14	10	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130408770	A	A	130408770	3	1	115	1	0	0	0	0	1	0	0	0	7666	855	30	3	468	3	IGSF1	23	130408770	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	8090389	130408770	24861790	427	108989											
GPR112	139378	broad.mit.edu	37	chrX	135498732	135498732	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagtgtatacttgctcgGgtgatgggtgcaccaaaatc	11	9	0	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135498732	T	T	135498732	1	4	115	0	1	0	0	0	0	0	0	0	6694	1247	43	2		2	GPR112	23	135498732	3'UTR	SNP	G	TCGA-44-3398-01A-01D-1105-08	5089962	135498732	19771828	428	108990											
RBMX	27316	broad.mit.edu	37	chrX	135961601	135961602	+	5'UTR	DEL	GG	-	-													aaccatgtttttttttttttGggccggtgagtctgttgaaa							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135961602	-	-	135961601	6	5	115	0	1	1	0	1	0	0	0	0	13259	1363	47	0		0	RBMX	23	135961601	5'UTR	DEL	GG	TCGA-44-3398-01A-01D-1105-08	462869	135961601	19308959	429	108991											
AFF2	2334	broad.mit.edu	37	chrX	147743758	147743758	+	Frame_Shift_Del	DEL	G	-	-													cataaccctagcactgtactGgcaagccaggccagtggtca							TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147743758	-	-	147743758	7	5	115	1	0	1	0	1	0	0	0	0	357	1335	47	0	520	0	AFF2	23	147743758	Frame_Shift_Del	DEL	G	TCGA-44-3398-01A-01D-1105-08	11782157	147743758	7526802	430	108992											
PLXNB3	5365	broad.mit.edu	37	chrX	153037582	153037582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcgggtcaggggaggggtGggctgtcccctccgtccctg	17	13	1	0			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153037582	A	A	153037582	1	1	115	0	1	0	0	0	0	0	0	0	12220	1363	47	4		4	PLXNB3	23	153037582	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	5293824	153037582	2232978	431	108993											
OPN1LW	5956	broad.mit.edu	37	chrX	153416513	153416513	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgatgatcggggcccagctGctcctgtaggcctgtctccc	12	14	1	2			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153416513	C	C	153416513	1	2	115	0	1	0	0	0	0	0	0	0	10971	1334	46	4		4	OPN1LW	23	153416513	Intron	SNP	G	TCGA-44-3398-01A-01D-1105-08	378931	153416513	1854047	432	108994											
TAZ	6901	broad.mit.edu	37	chrX	153641823	153641823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtccctgcttaggaccCctgcagctgcagacatctgc	9	15	2	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153641823	A	A	153641823	3	1	115	1	0	0	0	0	1	0	0	0	15715	623	22	2	303	2	TAZ	23	153641823	Missense_Mutation	SNP	C	TCGA-44-3398-01A-01D-1105-08	225310	153641823	1628737	433	108995											
LAGE3	8270	broad.mit.edu	37	chrX	153706525	153706525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcccctcaggcagagacCggcccagcgcacctggcgct	12	18	1	1			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153706525	T	T	153706525	1	4	115	0	1	0	0	0	0	0	0	0	8673	667	23	4		4	LAGE3	23	153706525	Intron	SNP	C	TCGA-44-3398-01A-01D-1105-08	64702	153706525	1564035	434	108996											
KLHL17	339451	broad.mit.edu	37	chr1	899186	899186	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctggtaggactttgcggtCtgagtttgactcctagggta	14	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	899186	T	T	899186	1	4	116	0	1	0	0	0	0	0	0	0	8443	928	32	4		4	KLHL17	1	899186	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08		899186	248351435	1	108997											
MIB2	142678	broad.mit.edu	37	chr1	1560537	1560537	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcgaggcagcgggcggcttCtactacaaggaccacctccc	13	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1560537	T	T	1560537	2	4	116	1	0	0	0	0	0	0	0	1	9660	912	32	4		4	MIB2	1	1560537	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	661351	1560537	247690084	2	108998											
GABRD	2563	broad.mit.edu	37	chr1	1960949	1960949	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggctgggatggggcggcgtGagggcagggctacgacaatg	21	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1960949	T	T	1960949	1	4	116	0	1	0	0	0	0	0	0	0	6229	1305	45	3		3	GABRD	1	1960949	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	400412	1960949	247289672	3	108999											
GABRD	2563	broad.mit.edu	37	chr1	1961087	1961087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcactggacgtctacttctgGatctgctatgtcttcgtgtt	10	10	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1961087	T	T	1961087	3	4	116	1	0	0	0	0	1	0	0	0	6229	1183	41	3	975	3	GABRD	1	1961087	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	138	1961087	247289534	4	109000											
PLCH2	9651	broad.mit.edu	37	chr1	2409932	2409932	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggagcggtgcatgggtGccatgcaagaggggatgcag	19	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2409932	A	A	2409932	3	1	116	1	0	0	0	0	1	0	0	0	12133	1319	46	4	148	4	PLCH2	1	2409932	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	448845	2409932	246840689	5	109001											
PLCH2	9651	broad.mit.edu	37	chr1	2428342	2428342	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagaagccggcgcagtAcctacgcttcaaccagcagc	11	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2428342	G	G	2428342	3	3	116	1	0	0	0	0	1	0	0	0	12133	391	14	5	2067	5	PLCH2	1	2428342	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	18410	2428342	246822279	6	109002											
NPHP4	261734	broad.mit.edu	37	chr1	6027358	6027358	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccaggtctggctcttaCgctctgcggggtcctggaga	15	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6027358	T	T	6027358	5	4	116	1	0	0	0	0	0	0	1	0	10676	550	19	4	3866	4	NPHP4	1	6027358	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	3599016	6027358	243223263	7	109003											
CHD5	26038	broad.mit.edu	37	chr1	6185835	6185835	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgagactcactctgcccttCcggcctctcttcaaagtcct	6	17	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6185835	A	A	6185835	4	1	116	1	0	0	0	0	0	1	0	0	3359	864	30	3	1762	3	CHD5	1	6185835	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	158477	6185835	243064786	8	109004											
CHD5	26038	broad.mit.edu	37	chr1	6186578	6186579	+	Intron	DNP	CC	AA	AA													gatgccctgacagaatcctgCcccaccctccgcctctgggt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6186579	AA	AA	6186578	1	1	116	0	1	0	0	0	0	0	0	0	3359	754	26	3		3	CHD5	1	6186578	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	743	6186578	243064043	9	109005											
RNF207	388591	broad.mit.edu	37	chr1	6270128	6270128	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccccaccctgaggagcaagAcatccgaatgtcctcccagc	9	17	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6270128	T	T	6270128	1	4	116	0	1	0	0	0	0	0	0	0	13585	290	10	5		5	RNF207	1	6270128	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	83550	6270128	242980493	10	109006											
HES3	390992	broad.mit.edu	37	chr1	6305524	6305524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcccgggctgggcctgcGcgtgtggcggccctggggaa	20	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6305524	T	T	6305524	3	4	116	1	0	0	0	0	1	0	0	0	7134	1087	38	3	528	3	HES3	1	6305524	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	35396	6305524	242945097	11	109007											
ACOT7	11332	broad.mit.edu	37	chr1	6354914	6354914	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccctcgtctttgccagaaGagtggttaccttttctgatc	8	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6354914	C	C	6354914	1	2	116	0	1	0	0	0	0	0	0	0	155	957	33	4		4	ACOT7	1	6354914	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	49390	6354914	242895707	12	109008											
SLC25A33	84275	broad.mit.edu	37	chr1	9630248	9630248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttccgaaaatttttcagGtgttctggagggacgtataa	10	5	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9630248	A	A	9630248	1	1	116	0	1	0	0	0	0	0	0	0	14611	1276	44	4		4	SLC25A33	1	9630248	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3275334	9630248	239620373	13	109009											
MTHFR	4524	broad.mit.edu	37	chr1	11852386	11852386	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcgtacttcttcagcacTtgcagaagtgcttccgctgt	9	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11852386	C	C	11852386	2	2	116	1	0	0	0	0	0	0	0	1	10025	1606	56	5		5	MTHFR	1	11852386	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	2222138	11852386	237398235	14	109010											
VPS13D	55187	broad.mit.edu	37	chr1	12439508	12439508	+	Intron	DEL	G	-	-													cgtgaaacagttgactcggaGgtttcatggttcattgtgta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12439508	-	-	12439508	6	5	116	0	1	1	0	1	0	0	0	0	17319	1015	35	0		0	VPS13D	1	12439508	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	587122	12439508	236811113	15	109011											
PRAMEF1	65121	broad.mit.edu	37	chr1	12853516	12853516	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catggaggccttcagcaggaGacacttccagactctgacgg	12	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12853516	T	T	12853516	3	4	116	1	0	0	0	0	1	0	0	0	12526	942	33	3	142	3	PRAMEF1	1	12853516	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	414008	12853516	236397105	16	109012											
PRAMEF8	391002	broad.mit.edu	37	chr1	12979865	12979865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggccaccctgcagaccCtggacttagaggactgtggg	14	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12979865	A	A	12979865	3	1	116	1	0	0	0	0	1	0	0	0	12545	680	24	2	1067	2	PRAMEF8	1	12979865	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	126349	12979865	236270756	17	109013											
CTRC	11330	broad.mit.edu	37	chr1	15765007	15765007	+	Intron	DEL	G	-	-													gctcttggcctgtggtaagcGgtggggtggggctgcagcta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15765007	-	-	15765007	6	5	116	0	1	1	0	1	0	0	0	0	4061	1131	39	0		0	CTRC	1	15765007	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	2785142	15765007	233485614	18	109014											
CELA2A	63036	broad.mit.edu	37	chr1	15788109	15788109	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccacacctgcggagggtcCctgatagccaacagctgggt	12	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15788109	A	A	15788109	2	1	116	1	0	0	0	0	0	0	0	1	3241	610	22	2		2	CELA2A	1	15788109	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	23102	15788109	233462512	19	109015											
TMEM82	388595	broad.mit.edu	37	chr1	16070920	16070921	+	Missense_Mutation	DNP	CC	AA	AA													ggcccatgcacatggcctccCccagctgctgggccgtgccc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	16070921	AA	AA	16070920	3	1	116	1	0	0	0	0	1	0	0	0	16329	623	22	2	616	2	TMEM82	1	16070920	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	282811	16070920	233179701	20	109016											
SPEN	23013	broad.mit.edu	37	chr1	16258070	16258070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggccgaaaagccagacGccactgcagatgctgagcct	11	13	0	3	rs140024761	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16258070	T	T	16258070	3	4	116	1	0	0	0	0	1	0	0	0	15156	1087	38	3	5377	3	SPEN	1	16258070	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	187150	16258070	232992551	21	109017											
FBXO42	54455	broad.mit.edu	37	chr1	16578650	16578650	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgccaaaggagctatggCtaatgttcacctcttttgtg	9	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16578650	T	T	16578650	1	4	116	0	1	0	0	0	0	0	0	0	5808	812	28	4		4	FBXO42	1	16578650	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	320580	16578650	232671971	22	109018											
NBPF1	55672	broad.mit.edu	37	chr1	16892443	16892443	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatgaattattgcctttAtgttgggatagaccagggcc	12	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16892443	G	G	16892443	1	3	116	0	1	0	0	0	0	0	0	0	10286	464	16	5		5	NBPF1	1	16892443	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	313793	16892443	232358178	23	109019											
PADI4	23569	broad.mit.edu	37	chr1	17668370	17668370	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggcttctggggagcaCtaaggagaggaggaaaagtc	17	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17668370	G	G	17668370	1	3	116	0	1	0	0	0	0	0	0	0	11474	580	20	4		4	PADI4	1	17668370	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	775927	17668370	231582251	24	109020											
PAX7	5081	broad.mit.edu	37	chr1	19018403	19018403	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccagacatatacacccgcGaggagctggcgcagaggacc	12	14	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19018403	T	T	19018403	4	4	116	1	0	0	0	0	0	1	0	0	11578	1059	37	3	760	3	PAX7	1	19018403	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1350033	19018403	230232218	25	109021											
UBR4	23352	broad.mit.edu	37	chr1	19432994	19432994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagacacatggtgaggggCagaaacatattgctcagagt	13	7	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19432994	A	A	19432994	1	1	116	0	1	0	0	0	0	0	0	0	17030	725	25	3		3	UBR4	1	19432994	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	414591	19432994	229817627	26	109022											
UBR4	23352	broad.mit.edu	37	chr1	19470605	19470605	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgaggtttaaaaggaaacTgtcacgctttgctctcatat	8	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19470605	A	A	19470605	1	1	116	0	1	0	0	0	0	0	0	0	17030	1595	55	5		5	UBR4	1	19470605	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	37611	19470605	229780016	27	109023											
RAP1GAP	5909	broad.mit.edu	37	chr1	21925963	21925963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaagctcctgtggggcCcctgacccccctgagcctct	9	19	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21925963	A	A	21925963	1	1	116	0	1	0	0	0	0	0	0	0	13145	638	22	2		2	RAP1GAP	1	21925963	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2455358	21925963	227324658	28	109024											
RAP1GAP	5909	broad.mit.edu	37	chr1	21936223	21936223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacccctactgtgcctccCtggactgccccttggtcggg	11	16	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21936223	A	A	21936223	1	1	116	0	1	0	0	0	0	0	0	0	13145	696	24	2		2	RAP1GAP	1	21936223	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	10260	21936223	227314398	29	109025											
USP48	84196	broad.mit.edu	37	chr1	22056275	22056275	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatgcatttcgagagcaatGagttcctttgccacacttgg	9	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22056275	C	C	22056275	3	2	116	1	0	0	0	0	1	0	0	0	17206	1290	45	4	1965	4	USP48	1	22056275	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	120052	22056275	227194346	30	109026											
EPHA8	2046	broad.mit.edu	37	chr1	22902947	22902948	+	Frame_Shift_Ins	INS	-	T	T													cctggagtcggaccgcgaccINStgggggccagcacacaagaa					rs138738837	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22902948	T	T	22902947	7	5	116	1	0	1	1	0	0	0	0	0	5215	680	24	0	407	0	EPHA8	1	22902947	Frame_Shift_Ins	INS	-	TCGA-44-3918-01A-01D-1105-08	846672	22902947	226347674	31	109027											
RHCE	6006	broad.mit.edu	37	chr1	25718665	25718665	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagtaagagcagtgagtgtCggcatcctctgcccagggga	14	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25718665	T	T	25718665	1	4	116	0	1	0	0	0	0	0	0	0	13434	899	31	4		4	RHCE	1	25718665	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2815718	25718665	223531956	32	109028											
SEPN1	57190	broad.mit.edu	37	chr1	26127769	26127769	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatctcagaggccctggactCctcccagctctgacactttg	9	15	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26127769	G	G	26127769	1	3	116	0	1	0	0	0	0	0	0	0	14169	870	30	4		4	SEPN1	1	26127769	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	409104	26127769	223122852	33	109029											
TRIM63	84676	broad.mit.edu	37	chr1	26392931	26392931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccagtagggatttgcagCctgcaggtggcaaaggtcaa	15	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26392931	A	A	26392931	3	1	116	1	0	0	0	0	1	0	0	0	16663	753	26	3	933	3	TRIM63	1	26392931	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	265162	26392931	222857690	34	109030											
CNKSR1	10256	broad.mit.edu	37	chr1	26515042	26515042	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggataaacaacagggCgtggagctcagacagaaacc	15	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26515042	T	T	26515042	1	4	116	0	1	0	0	0	0	0	0	0	3638	783	27	4		4	CNKSR1	1	26515042	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	122111	26515042	222735579	35	109031											
ZDHHC18	84243	broad.mit.edu	37	chr1	27159202	27159202	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaactatactaggaactgggGatgcagtcgtgagcaaggca	13	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27159202	A	A	27159202	1	1	116	0	1	0	0	0	0	0	0	0	17734	1189	41	4		4	ZDHHC18	1	27159202	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	644160	27159202	222091419	36	109032											
C1orf172	126695	broad.mit.edu	37	chr1	27278544	27278544	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtagacaggcaggggcTgcatccccgcacacaggctc	12	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27278544	A	A	27278544	3	1	116	1	0	0	0	0	1	0	0	0	2033	1580	55	5	880	5	C1orf172	1	27278544	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	119342	27278544	221972077	37	109033											
SLC9A1	6548	broad.mit.edu	37	chr1	27426944	27426945	+	Nonsense_Mutation	DNP	CC	AT	AT													ggttcctggggacgaagtctCcttgctccgcatcatgatgc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	27426945	AT	AT	27426944	4	1	116	1	0	0	0	0	0	1	0	0	14823	864	30	3	149	3	SLC9A1	1	27426944	Nonsense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	148400	27426944	221823677	38	109034											
PTPRU	10076	broad.mit.edu	37	chr1	29642666	29642666	+	Intron	DEL	G	-	-													ctgcgggaagagttccaggtGggggatgagtgcgtgtgtat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29642666	-	-	29642666	6	5	116	0	1	1	0	1	0	0	0	0	12921	1363	47	0		0	PTPRU	1	29642666	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	2215722	29642666	219607955	39	109035											
BAI2	576	broad.mit.edu	37	chr1	32194077	32194077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagatcccacggaacccCcgggcttgggctcctggggt	16	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32194077	A	A	32194077	1	1	116	0	1	0	0	0	0	0	0	0	1304	638	22	2		2	BAI2	1	32194077	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2551411	32194077	217056544	40	109036											
THRAP3	9967	broad.mit.edu	37	chr1	36758225	36758225	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttgggtcctcaggaatgAcattacatgaacgctttact	8	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36758225	G	G	36758225	3	3	116	1	0	0	0	0	1	0	0	0	15997	275	10	5	1963	5	THRAP3	1	36758225	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	4564148	36758225	212492396	41	109037											
GRIK3	2899	broad.mit.edu	37	chr1	37324537	37324537	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatcatgccataagtttGgtcctatggagcccattttc	7	11	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37324537	C	C	37324537	1	2	116	0	1	0	0	0	0	0	0	0	6841	1363	47	4		4	GRIK3	1	37324537	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	566312	37324537	211926084	42	109038											
SNIP1	79753	broad.mit.edu	37	chr1	38006165	38006165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgctcttcttcctgagcCtgcaggttctgagtgtctcg	10	14	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38006165	A	A	38006165	3	1	116	1	0	0	0	0	1	0	0	0	14962	680	24	2	679	2	SNIP1	1	38006165	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	681628	38006165	211244456	43	109039											
MFSD2A	84879	broad.mit.edu	37	chr1	40428901	40428901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctacacctcagcccgggGctgcactgccaccctgggca	11	18	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40428901	T	T	40428901	1	4	116	0	1	0	0	0	0	0	0	0	9623	1218	42	3		3	MFSD2A	1	40428901	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2422736	40428901	208821720	44	109040											
SMAP2	64744	broad.mit.edu	37	chr1	40881975	40881975	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctaaagactccattctttCactgtatggatcccagacgc	6	13	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40881975	T	T	40881975	3	4	116	1	0	0	0	0	1	0	0	0	14881	838	29	4	839	4	SMAP2	1	40881975	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	453074	40881975	208368646	45	109041											
RIMKLA	284716	broad.mit.edu	37	chr1	42875633	42875633	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcttctctaaccccttctCttgctctttttcttcttaaa	3	13	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42875633	G	G	42875633	1	3	116	0	1	0	0	0	0	0	0	0	13476	928	32	4		4	RIMKLA	1	42875633	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1993658	42875633	206374988	46	109042											
LEPRE1	64175	broad.mit.edu	37	chr1	43232495	43232495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggaccaccccgggccagtCcccgcgcgcgtaggctgcgg	15	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43232495	A	A	43232495	3	1	116	1	0	0	0	0	1	0	0	0	8801	855	30	3	2141	3	LEPRE1	1	43232495	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	356862	43232495	206018126	47	109043											
TIE1	7075	broad.mit.edu	37	chr1	43777281	43777281	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtccccagcttgaaacaAagatgcagaagtggactgga	13	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43777281	G	G	43777281	1	3	116	0	1	0	0	0	0	0	0	0	16016	29	1	5		5	TIE1	1	43777281	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	544786	43777281	205473340	48	109044											
KLF17	128209	broad.mit.edu	37	chr1	44588065	44588065	+	Intron	DEL	A	-	-													ggggtcattttcacagctttAagatgtgtattcatgctgac							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44588065	-	-	44588065	6	5	116	0	1	1	0	1	0	0	0	0	8416	377	13	0		0	KLF17	1	44588065	Intron	DEL	A	TCGA-44-3918-01A-01D-1105-08	810784	44588065	204662556	49	109045											
HECTD3	79654	broad.mit.edu	37	chr1	45469633	45469633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagaaggaaatcagtgcCtgcatggatggtgagggagg	19	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45469633	A	A	45469633	1	1	116	0	1	0	0	0	0	0	0	0	7108	696	24	2		2	HECTD3	1	45469633	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	881568	45469633	203780988	50	109046											
HECTD3	79654	broad.mit.edu	37	chr1	45470039	45470039	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttcagcagacctgcctgcAtagctgccacctggggagtg	12	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45470039	T	T	45470039	3	4	116	1	0	0	0	0	1	0	0	0	7108	217	8	5	452	5	HECTD3	1	45470039	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	406	45470039	203780582	51	109047											
CYP4X1	260293	broad.mit.edu	37	chr1	47496893	47496893	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatcagggtttctgtactTgtctgcctcatagggcttgc	10	9	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47496893	A	A	47496893	1	1	116	0	1	0	0	0	0	0	0	0	4226	1827	63	5		5	CYP4X1	1	47496893	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2026854	47496893	201753728	52	109048											
SPATA6	54558	broad.mit.edu	37	chr1	48825194	48825194	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttcacatgcataattgcTgcttccccttctaatactta	3	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48825194	A	A	48825194	1	1	116	0	1	0	0	0	0	0	0	0	15129	1595	55	5		5	SPATA6	1	48825194	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	1328301	48825194	200425427	53	109049											
ELAVL4	1996	broad.mit.edu	37	chr1	50659500	50659500	+	Frame_Shift_Del	DEL	C	-	-													acctctatgttagcggccttCccaaaaccatgacccagaag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50659500	-	-	50659500	7	5	116	1	0	1	0	1	0	0	0	0	5094	855	30	0	531	0	ELAVL4	1	50659500	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	1834306	50659500	198591121	54	109050											
TTC39A	22996	broad.mit.edu	37	chr1	51760290	51760290	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctctctgggcctcagtttcCccatctgcacaatgacagtg	8	15	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51760290	G	G	51760290	1	3	116	0	1	0	0	0	0	0	0	0	16833	638	22	4		4	TTC39A	1	51760290	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1100790	51760290	197490331	55	109051											
OSBPL9	114883	broad.mit.edu	37	chr1	52226377	52226377	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttagagtactattaatcccGtagatgcaatatatcaacct	5	8	1	2	rs61733665		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52226377	C	C	52226377	3	2	116	1	0	0	0	0	1	0	0	0	11378	1145	40	4	740	4	OSBPL9	1	52226377	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	466087	52226377	197024244	56	109052											
OSBPL9	114883	broad.mit.edu	37	chr1	52248146	52248146	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcttggtgtgtgtagagCgagcagagaccccaattacc	14	9	0	2	rs140508114	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52248146	T	T	52248146	1	4	116	0	1	0	0	0	0	0	0	0	11378	783	27	4		4	OSBPL9	1	52248146	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	21769	52248146	197002475	57	109053											
C1orf163	65260	broad.mit.edu	37	chr1	53153409	53153409	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acattacccaaatgttaaggGttggacacctttctgctgtt	8	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53153409	A	A	53153409	3	1	116	1	0	0	0	0	1	0	0	0	2031	1261	44	4	20	4	C1orf163	1	53153409	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	905263	53153409	196097212	58	109054											
C8B	732	broad.mit.edu	37	chr1	57431535	57431535	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaactgtcacttacctggaGccaggcaaactgagacagcc	10	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57431535	T	T	57431535	2	4	116	1	0	0	0	0	0	0	0	1	2442	958	34	3		3	C8B	1	57431535	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	4278126	57431535	191819086	59	109055											
OMA1	115209	broad.mit.edu	37	chr1	58996336	58996336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatctcgaggacaaatggcCcaaatcattgtgaggaaaat	9	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58996336	A	A	58996336	3	1	116	1	0	0	0	0	1	0	0	0	10958	624	22	2	513	2	OMA1	1	58996336	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1564801	58996336	190254285	60	109056											
DAB1	1600	broad.mit.edu	37	chr1	59002474	59002474	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcacatatcactaaagctCaaatgcatacactagaattt	4	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59002474	G	G	59002474	1	3	116	0	1	0	0	0	0	0	0	0	4250	841	29	4		4	DAB1	1	59002474	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6138	59002474	190248147	61	109057											
KANK4	163782	broad.mit.edu	37	chr1	62739778	62739778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatccaccctggcaaggCccaggctttcctcagttacc	9	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62739778	A	A	62739778	3	1	116	1	0	0	0	0	1	0	0	0	8049	739	26	3	2021	3	KANK4	1	62739778	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3737304	62739778	186510843	62	109058											
DOCK7	85440	broad.mit.edu	37	chr1	62995099	62995099	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtaccatattgatgactttCttatgcaatccaaacagtct	5	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62995099	G	G	62995099	3	3	116	1	0	0	0	0	1	0	0	0	4732	912	32	4	2876	4	DOCK7	1	62995099	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	255321	62995099	186255522	63	109059											
LEPR	3953	broad.mit.edu	37	chr1	66088664	66088664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggacttaattttcagaaGgttgctttttcaattttttt	6	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66088664	T	T	66088664	3	4	116	1	0	0	0	0	1	0	0	0	8800	1014	35	2	2739	2	LEPR	1	66088664	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3093565	66088664	183161957	64	109060											
PDE4B	5142	broad.mit.edu	37	chr1	66384213	66384213	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatcatttagtttcttctttCactccatttaacatttgaat	3	8	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66384213	A	A	66384213	1	1	116	0	1	0	0	0	0	0	0	0	11734	841	29	3		3	PDE4B	1	66384213	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	295549	66384213	182866408	65	109061											
SGIP1	84251	broad.mit.edu	37	chr1	67147788	67147788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgactccccagctccaggcCctctcggccccccaggtccc	8	23	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67147788	A	A	67147788	3	1	116	1	0	0	0	0	1	0	0	0	14319	623	22	2	1109	2	SGIP1	1	67147788	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	763575	67147788	182102833	66	109062											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67243037	67243037	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcatacttattggaagcaGatgcctctgggatcctaaaa	10	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67243037	T	T	67243037	3	4	116	1	0	0	0	0	1	0	0	0	15841	942	33	3	454	3	TCTEX1D1	1	67243037	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	95249	67243037	182007584	67	109063											
LRRC7	57554	broad.mit.edu	37	chr1	70226092	70226092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggtaacttttgacaacCtaaaatatacaatgtaaatg	5	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70226092	A	A	70226092	1	1	116	0	1	0	0	0	0	0	0	0	9107	696	24	2		2	LRRC7	1	70226092	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2983055	70226092	179024529	68	109064											
LRRC7	57554	broad.mit.edu	37	chr1	70504169	70504169	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaattggaccagaacccctAgtccgtttgaagacaggacc	10	11	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70504169	T	T	70504169	3	4	116	1	0	0	0	0	1	0	0	0	9107	420	15	5	2622	5	LRRC7	1	70504169	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	278077	70504169	178746452	69	109065											
LRRC7	57554	broad.mit.edu	37	chr1	70541828	70541828	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagccgggagcagcagccGtatgaaggaaatataaacaa	12	9	0	1	rs147035395	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70541828	A	A	70541828	2	1	116	1	0	0	0	0	0	0	0	1	9107	1132	40	4		4	LRRC7	1	70541828	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	37659	70541828	178708793	70	109066											
C1orf173	127254	broad.mit.edu	37	chr1	75086428	75086428	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtgtacctttttcaagTagtttgcctttgtagacaca	7	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75086428	C	C	75086428	2	2	116	1	0	0	0	0	0	0	0	1	2034	1625	57	5		5	C1orf173	1	75086428	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	4544600	75086428	174164193	71	109067											
SLC44A5	204962	broad.mit.edu	37	chr1	75699758	75699758	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtatcaaaaatatccaacTaaggaccatggcaatcgtca	6	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75699758	A	A	75699758	3	1	116	1	0	0	0	0	1	0	0	0	14753	1522	53	5	1556	5	SLC44A5	1	75699758	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	613330	75699758	173550863	72	109068											
ZZZ3	26009	broad.mit.edu	37	chr1	78098394	78098394	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccatcaggctgacagtcatCacagtttataacagctgaat	7	11	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78098394	A	A	78098394	3	1	116	1	0	0	0	0	1	0	0	0	18385	826	29	3	2109	3	ZZZ3	1	78098394	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2398636	78098394	171152227	73	109069											
PTGFR	5737	broad.mit.edu	37	chr1	79002163	79002163	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaacactttttgctctcCgaatggcaacatggaatcaa	6	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79002163	A	A	79002163	2	1	116	1	0	0	0	0	0	0	0	1	12855	644	23	1		1	PTGFR	1	79002163	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	903769	79002163	170248458	74	109070											
COL24A1	255631	broad.mit.edu	37	chr1	86246909	86246909	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgataaacttacagttctAcctgttgggcctattatacc	6	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86246909	C	C	86246909	2	2	116	1	0	0	0	0	0	0	0	1	3715	378	14	5		5	COL24A1	1	86246909	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	7244746	86246909	163003712	75	109071											
COL24A1	255631	broad.mit.edu	37	chr1	86497581	86497581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctaagcccaggaaaccccgGaggaccagtgccacctacaa	9	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86497581	T	T	86497581	3	4	116	1	0	0	0	0	1	0	0	0	3715	1174	41	3	3303	3	COL24A1	1	86497581	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	250672	86497581	162753040	76	109072											
GBP1	2633	broad.mit.edu	37	chr1	89525729	89525729	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctgtgcaggataagactTatgacactgggattatttgt	11	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89525729	C	C	89525729	1	2	116	0	1	0	0	0	0	0	0	0	6335	1769	61	5		5	GBP1	1	89525729	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	3028148	89525729	159724892	77	109073											
LRRC8D	55144	broad.mit.edu	37	chr1	90399621	90399621	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagcgaactttgtcaacGcaatcagctttgaacacgtc	7	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90399621	T	T	90399621	3	4	116	1	0	0	0	0	1	0	0	0	9111	1087	38	3	996	3	LRRC8D	1	90399621	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	873892	90399621	158851000	78	109074											
CCDC18	343099	broad.mit.edu	37	chr1	93646523	93646523	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggcaccttggatgcgctGggactggtcctcgtggttgc	15	13	0	0	rs76205214	byFrequency;by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93646523	A	A	93646523	1	1	116	0	1	0	0	0	0	0	0	0	2821	1363	47	4		4	CCDC18	1	93646523	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3246902	93646523	155604098	79	109075											
CNN3	1266	broad.mit.edu	37	chr1	95363333	95363333	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggtcgctatattggtaatCtctggggtagtcatcctggt	12	7	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95363333	G	G	95363333	3	3	116	1	0	0	0	0	1	0	0	0	3643	913	32	4	38	4	CNN3	1	95363333	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1716810	95363333	153887288	80	109076											
VCAM1	7412	broad.mit.edu	37	chr1	101197151	101197151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcaatagttaacataagGttaatcgttaaaacctctgt	7	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101197151	T	T	101197151	1	4	116	0	1	0	0	0	0	0	0	0	17264	1276	44	3		3	VCAM1	1	101197151	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5833818	101197151	148053470	81	109077											
COL11A1	1301	broad.mit.edu	37	chr1	103427840	103427840	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctaaagaatataataaacAtcgtcaagacagattaattt	4	7	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103427840	G	G	103427840	1	3	116	0	1	0	0	0	0	0	0	0	3699	232	8	5		5	COL11A1	1	103427840	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	2230689	103427840	145822781	82	109078											
NTNG1	22854	broad.mit.edu	37	chr1	107937801	107937801	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgtaatctccatgccactGtatgtgtgtatgacaacagc	9	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107937801	C	C	107937801	3	2	116	1	0	0	0	0	1	0	0	0	10799	1377	48	4	923	4	NTNG1	1	107937801	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4509961	107937801	141312820	83	109079											
NTNG1	22854	broad.mit.edu	37	chr1	107979473	107979473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcatggctgatttctGcttggctaggccggtgcgtg	15	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107979473	T	T	107979473	1	4	116	0	1	0	0	0	0	0	0	0	10799	1334	46	3		3	NTNG1	1	107979473	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	41672	107979473	141271148	84	109080											
FNDC7	163479	broad.mit.edu	37	chr1	109270669	109270669	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagcaatatgtcatgtactCcccagttcataaccacaggt	7	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109270669	T	T	109270669	3	4	116	1	0	0	0	0	1	0	0	0	6031	855	30	4	1377	4	FNDC7	1	109270669	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1291196	109270669	139979952	85	109081											
DENND2D	79961	broad.mit.edu	37	chr1	111741195	111741195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctacaggagccacagaaCtcacacatgttccttctccc	7	15	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111741195	A	A	111741195	1	1	116	0	1	0	0	0	0	0	0	0	4471	580	20	3		3	DENND2D	1	111741195	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2470526	111741195	137509426	86	109082											
HMGCS2	3158	broad.mit.edu	37	chr1	120298156	120298156	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcttgtcgaacatgtcctGagaggcctttagaagtgctt	10	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120298156	C	C	120298156	3	2	116	1	0	0	0	0	1	0	0	0	7300	1299	45	4	461	4	HMGCS2	1	120298156	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	8556961	120298156	128952465	87	109083											
NOTCH2	4853	broad.mit.edu	37	chr1	120471800	120471800	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attaaggcaatggggaccccGggcacagtcatcaatgttct	11	10	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120471800	C	C	120471800	3	2	116	1	0	0	0	0	1	0	0	0	10643	1115	39	4	3772	4	NOTCH2	1	120471800	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	173644	120471800	128778821	88	109084											
NBPF9	400818	broad.mit.edu	37	chr1	144814933	144814933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgacccaaaaccccagGcttatgagaggctccagacc	9	14	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144814933	T	T	144814933	1	4	116	0	1	0	0	0	0	0	0	0	10294	1218	42	3		3	NBPF9	1	144814933	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	24343133	144814933	104435688	89	109085											
NBPF9	400818	broad.mit.edu	37	chr1	144828425	144828425	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttacctcattaAtggatctatcctttttcttt	2	7	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144828425	G	G	144828425	1	3	116	0	1	0	0	0	0	0	0	0	10294	116	4	5		5	NBPF9	1	144828425	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	13492	144828425	104422196	90	109086											
PDE4DIP	9659	broad.mit.edu	37	chr1	144864138	144864138	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatgggtcccctcttacctgGagtcgttttcctggagggaa	12	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144864138	C	C	144864138	3	2	116	1	0	0	0	0	1	0	0	0	11737	1174	41	4	1119	4	PDE4DIP	1	144864138	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	35713	144864138	104386483	91	109087											
LOC200030	200030	broad.mit.edu	37	chr1	148193785	148193785	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcaccccaggggagtgtgGcctgcccgccccctccagcc	11	20	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148193785	C	C	148193785	1	2	116	0	1	0	0	0	0	0	0	0	8950	1218	42	4		4	LOC200030	1	148193785	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3329647	148193785	101056836	92	109088											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858692	149858692	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtctacatggcggcggtcctCgagtacctgaccgccgagat	13	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149858692	G	G	149858692	2	3	116	1	0	0	0	0	0	0	0	1	7245	871	31	4		4	HIST2H2AC	1	149858692	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1664907	149858692	99391929	93	109089											
TARS2	80222	broad.mit.edu	37	chr1	150464060	150464060	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttttcttcaatctcccttCtacctttttccaggataacc	2	14	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150464060	T	T	150464060	1	4	116	0	1	0	0	0	0	0	0	0	15679	928	32	4		4	TARS2	1	150464060	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	605368	150464060	98786561	94	109090											
SETDB1	9869	broad.mit.edu	37	chr1	150934743	150934743	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacctccccctcccaggctCaagagattctcccacctcag	5	20	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150934743	G	G	150934743	1	3	116	0	1	0	0	0	0	0	0	0	14251	841	29	4		4	SETDB1	1	150934743	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	470683	150934743	98315878	95	109091											
FAM63A	55793	broad.mit.edu	37	chr1	150970273	150970273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcctggggagaacaagagtTgtgcagtgggctgaggccca	17	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150970273	A	A	150970273	1	1	116	0	1	0	0	0	0	0	0	0	5647	1827	63	5		5	FAM63A	1	150970273	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	35530	150970273	98280348	96	109092											
TCHH	7062	broad.mit.edu	37	chr1	152080695	152080695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttcacggaattttctGtcgcggtcgtgacgcagctg	11	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152080695	T	T	152080695	3	4	116	1	0	0	0	0	1	0	0	0	15822	1368	48	3	837	3	TCHH	1	152080695	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1110422	152080695	97169926	97	109093											
HRNR	388697	broad.mit.edu	37	chr1	152191479	152191479	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcggccgcggcccgaagcgtGatgggaggcagactcatgct	16	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152191479	C	C	152191479	3	2	116	1	0	0	0	0	1	0	0	0	7426	1290	45	4	5930	4	HRNR	1	152191479	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	110784	152191479	97059142	98	109094											
HRNR	388697	broad.mit.edu	37	chr1	152193740	152193740	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactaaaagaggattcttgcCgtttgttctcctctttttca	7	9	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152193740	T	T	152193740	3	4	116	1	0	0	0	0	1	0	0	0	7426	652	23	4	8191	4	HRNR	1	152193740	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2261	152193740	97056881	99	109095											
FLG	2312	broad.mit.edu	37	chr1	152285627	152285627	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctgagtgcctggtgccgtCtcctgattgttcctcatttc	9	14	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152285627	A	A	152285627	3	1	116	1	0	0	0	0	1	0	0	0	5979	913	32	3	10454	3	FLG	1	152285627	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	91887	152285627	96964994	100	109096											
FLG	2312	broad.mit.edu	37	chr1	152286112	152286112	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactggcctgactaccgctaGacccccggtgtccacgatcg	10	17	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152286112	C	C	152286112	3	2	116	1	0	0	0	0	1	0	0	0	5979	942	33	4	10939	4	FLG	1	152286112	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	485	152286112	96964509	101	109097											
FLG2	388698	broad.mit.edu	37	chr1	152328819	152328819	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgagccagacccatgTtgtccaaagccagatgtctt	9	12	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152328819	C	C	152328819	2	2	116	1	0	0	0	0	0	0	0	1	5980	1722	60	5		5	FLG2	1	152328819	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	42707	152328819	96921802	102	109098											
LCE2C	353140	broad.mit.edu	37	chr1	152648428	152648429	+	Intron	DNP	CC	AA	AA													tagaagaggtataatatgatCcttggtttgaaatatttaaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152648429	AA	AA	152648428	1	1	116	0	1	0	0	0	0	0	0	0	8739	870	30	3		3	LCE2C	1	152648428	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	319609	152648428	96602193	103	109099											
C1orf189	388701	broad.mit.edu	37	chr1	154177945	154177945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaaggctgcttctcaccCcttccgcatctgttttcctc	7	16	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154177945	A	A	154177945	1	1	116	0	1	0	0	0	0	0	0	0	2042	638	22	2		2	C1orf189	1	154177945	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1529517	154177945	95072676	104	109100											
C1orf43	25912	broad.mit.edu	37	chr1	154185163	154185163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttttttttgagatggaGtctcgctctgtcacccgggc	11	10	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154185163	T	T	154185163	1	4	116	0	1	0	0	0	0	0	0	0	2062	1044	36	3		3	C1orf43	1	154185163	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	7218	154185163	95065458	105	109101											
UBAP2L	9898	broad.mit.edu	37	chr1	154224000	154224000	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctggctcagcagatatctCagggctaaacctgcagtttg	11	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154224000	G	G	154224000	4	3	116	1	0	0	0	0	0	1	0	0	16964	838	29	4	1585	4	UBAP2L	1	154224000	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	38837	154224000	95026621	106	109102											
UBE2Q1	55585	broad.mit.edu	37	chr1	154524037	154524037	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaaccctcatgcttgtcctCtgggcaatcagctgtgtcta	9	12	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154524037	G	G	154524037	1	3	116	0	1	0	0	0	0	0	0	0	16995	928	32	4		4	UBE2Q1	1	154524037	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	300037	154524037	94726584	107	109103											
PKLR	5313	broad.mit.edu	37	chr1	155264414	155264414	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaccccatgctccaccCcgaagcgcaggtctcggacg	10	18	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155264414	G	G	155264414	3	3	116	1	0	0	0	0	1	0	0	0	12071	623	22	4	924	4	PKLR	1	155264414	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	740377	155264414	93986207	108	109104											
PKLR	5313	broad.mit.edu	37	chr1	155269945	155269946	+	Missense_Mutation	DNP	AG	TT	TT													cgggctcggagtcaatgtccAgtaggcagaggtgttccagg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	155269946	TT	TT	155269945	3	4	116	1	0	0	0	0	1	0	0	0	12071	188	7	5	1537	5	PKLR	1	155269945	Missense_Mutation	DNP	AG	TCGA-44-3918-01A-01D-1105-08	5531	155269945	93980676	109	109105											
SEMA4A	64218	broad.mit.edu	37	chr1	156146368	156146368	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggagttgggggtctctaCcagtgctgggcaactgagaa	16	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156146368	T	T	156146368	2	4	116	1	0	0	0	0	0	0	0	1	14144	518	18	4		4	SEMA4A	1	156146368	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	876423	156146368	93104253	110	109106											
SLC25A44	9673	broad.mit.edu	37	chr1	156169567	156169567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagagcccagccagaagGggaaagcacaaagctccacc	10	14	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156169567	T	T	156169567	1	4	116	0	1	0	0	0	0	0	0	0	14623	1247	43	2		2	SLC25A44	1	156169567	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	23199	156169567	93081054	111	109107											
HDGF	3068	broad.mit.edu	37	chr1	156713853	156713853	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaagactaggggctggatCgacctctcagactgggcacc	12	14	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156713853	A	A	156713853	1	1	116	0	1	0	0	0	0	0	0	0	7085	899	31	3		3	HDGF	1	156713853	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	544286	156713853	92536768	112	109108											
ARHGEF11	9826	broad.mit.edu	37	chr1	156914257	156914257	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaccattcattcattcattCattcattcattcattcaagt	1	11	8	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156914257	T	T	156914257	1	4	116	0	1	0	0	0	0	0	0	0	898	841	29	4		4	ARHGEF11	1	156914257	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	200404	156914257	92336364	113	109109											
FCRL5	83416	broad.mit.edu	37	chr1	157490914	157490914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagagaggtttaaggacGctcctccagagggggacgac	15	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157490914	T	T	157490914	3	4	116	1	0	0	0	0	1	0	0	0	5855	1087	38	3	553	3	FCRL5	1	157490914	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	576657	157490914	91759707	114	109110											
FCRL4	83417	broad.mit.edu	37	chr1	157550266	157550266	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacctgcccagtcctgggtTttcatgaaaatgaggtgaaa	10	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157550266	A	A	157550266	1	1	116	0	1	0	0	0	0	0	0	0	5854	1856	64	5		5	FCRL4	1	157550266	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	59352	157550266	91700355	115	109111											
FCRL3	115352	broad.mit.edu	37	chr1	157659676	157659676	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accagccccgtgattcccgcAgcggtaaggcctgttctgtt	11	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157659676	T	T	157659676	2	4	116	1	0	0	0	0	0	0	0	1	5853	175	7	5		5	FCRL3	1	157659676	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	109410	157659676	91590945	116	109112											
FCRL2	79368	broad.mit.edu	37	chr1	157740181	157740181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcacccagcccatcccaCagaagtcagggttttacctt	6	16	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157740181	A	A	157740181	1	1	116	0	1	0	0	0	0	0	0	0	5852	493	17	3		3	FCRL2	1	157740181	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	80505	157740181	91510440	117	109113											
CD1B	910	broad.mit.edu	37	chr1	158298024	158298024	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggagacatgatgatgGctcatgggatattctgatat	14	4	2	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158298024	T	T	158298024	1	4	116	0	1	0	0	0	0	0	0	0	3005	1218	42	3		3	CD1B	1	158298024	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	557843	158298024	90952597	118	109114											
CD1B	910	broad.mit.edu	37	chr1	158299199	158299199	+	Frame_Shift_Del	DEL	G	-	-													ctggccctctaaactgctgtGcttcacccgacaggacaggc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158299199	-	-	158299199	7	5	116	1	0	1	0	1	0	0	0	0	3005	1319	46	0	166	0	CD1B	1	158299199	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	1175	158299199	90951422	119	109115											
OR10K1	391109	broad.mit.edu	37	chr1	158435417	158435417	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctcatccctggccagGctgcagcagctgctctttgt	11	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158435417	A	A	158435417	2	1	116	1	0	0	0	0	0	0	0	1	11007	1194	42	4		4	OR10K1	1	158435417	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	136218	158435417	90815204	120	109116											
OR10K1	391109	broad.mit.edu	37	chr1	158436249	158436249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaataaggaattcaaatcaGccctacgaagaacaatcggc	8	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158436249	T	T	158436249	3	4	116	1	0	0	0	0	1	0	0	0	11007	971	34	3	900	3	OR10K1	1	158436249	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	832	158436249	90814372	121	109117											
OR10R2	343406	broad.mit.edu	37	chr1	158450094	158450094	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgatgggttatgatcgcTatgctgccatttgtcaccct	11	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158450094	A	A	158450094	3	1	116	1	0	0	0	0	1	0	0	0	11011	1522	53	5	429	5	OR10R2	1	158450094	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	13845	158450094	90800527	122	109118											
OR10Z1	128368	broad.mit.edu	37	chr1	158576803	158576803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctagcctgtggagataCaggcccgagtgagctgagga	16	9	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158576803	A	A	158576803	3	1	116	1	0	0	0	0	1	0	0	0	11017	478	17	3	577	3	OR10Z1	1	158576803	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	126709	158576803	90673818	123	109119											
SPTA1	6708	broad.mit.edu	37	chr1	158626346	158626346	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcctgtcatcgctaagttAgtcttacctggcaggcgttt	9	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158626346	T	T	158626346	1	4	116	0	1	0	0	0	0	0	0	0	15234	435	15	5		5	SPTA1	1	158626346	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	49543	158626346	90624275	124	109120											
SPTA1	6708	broad.mit.edu	37	chr1	158632624	158632624	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggccagtggctctttcaGagcttcaaatcggcatacca	11	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158632624	T	T	158632624	3	4	116	1	0	0	0	0	1	0	0	0	15234	933	33	3	5071	3	SPTA1	1	158632624	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6278	158632624	90617997	125	109121											
SPTA1	6708	broad.mit.edu	37	chr1	158650603	158650604	+	Intron	DNP	CC	AA	AA													tcaaaactcctgcttgcattCccaggataactcaaatggag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	158650604	AA	AA	158650603	1	1	116	0	1	0	0	0	0	0	0	0	15234	870	30	3		3	SPTA1	1	158650603	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	17979	158650603	90600018	126	109122											
SPTA1	6708	broad.mit.edu	37	chr1	158651164	158651164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttgacctccagatacccCtacattttggccccaatttc	5	14	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158651164	T	T	158651164	1	4	116	0	1	0	0	0	0	0	0	0	15234	696	24	4		4	SPTA1	1	158651164	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	561	158651164	90599457	127	109123											
SPTA1	6708	broad.mit.edu	37	chr1	158651177	158651177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacccctacattttggccCcaatttcctcttgttccaaa	4	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158651177	A	A	158651177	1	1	116	0	1	0	0	0	0	0	0	0	15234	638	22	2		2	SPTA1	1	158651177	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	13	158651177	90599444	128	109124											
OR6K2	81448	broad.mit.edu	37	chr1	158670322	158670322	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatgatgaccaggtttcCaacaacaatgaaagcataga	9	7	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158670322	A	A	158670322	4	1	116	1	0	0	0	0	0	1	0	0	11296	603	21	2	857	2	OR6K2	1	158670322	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	19145	158670322	90580299	129	109125											
OR6K2	81448	broad.mit.edu	37	chr1	158670443	158670443	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcgattggggctctccatCtccaagttgaaagtgagagt	12	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158670443	A	A	158670443	1	1	116	0	1	0	0	0	0	0	0	0	11296	928	32	3		3	OR6K2	1	158670443	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	121	158670443	90580178	130	109126											
OR6K6	128371	broad.mit.edu	37	chr1	158724612	158724612	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattacagaaaggaatgaagCaatattcagtgggtaatcaa	9	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158724612	T	T	158724612	4	4	116	1	0	0	0	0	0	1	0	0	11298	711	25	4	9	4	OR6K6	1	158724612	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	54169	158724612	90526009	131	109127											
PYHIN1	149628	broad.mit.edu	37	chr1	158908060	158908060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccagactaggctaatgCaatagagatagactaaaata	9	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158908060	A	A	158908060	1	1	116	0	1	0	0	0	0	0	0	0	12973	725	25	3		3	PYHIN1	1	158908060	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	183448	158908060	90342561	132	109128											
IFI16	3428	broad.mit.edu	37	chr1	158988130	158988130	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccatttgaatatgagaccCcagaaatggagaaaaaaata	8	6	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158988130	G	G	158988130	3	3	116	1	0	0	0	0	1	0	0	0	7581	623	22	4	675	4	IFI16	1	158988130	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	80070	158988130	90262491	133	109129											
AIM2	9447	broad.mit.edu	37	chr1	159035799	159035799	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttctgataatgttcagCgggacattaaccttttggtc	9	8	2	1	rs142558736		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159035799	A	A	159035799	2	1	116	1	0	0	0	0	0	0	0	1	432	755	27	3		3	AIM2	1	159035799	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	47669	159035799	90214822	134	109130											
AIM2	9447	broad.mit.edu	37	chr1	159035909	159035909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattataattattctctttgGaatgaatttatctttcagca	4	5	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159035909	T	T	159035909	3	4	116	1	0	0	0	0	1	0	0	0	432	1174	41	3	436	3	AIM2	1	159035909	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	110	159035909	90214712	135	109131											
AIM2	9447	broad.mit.edu	37	chr1	159038199	159038199	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttaatctgatgaatcaaAggtagttcctgtttttgtga	9	4	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159038199	T	T	159038199	1	4	116	0	1	0	0	0	0	0	0	0	432	87	3	5		5	AIM2	1	159038199	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	2290	159038199	90212422	136	109132											
AIM2	9447	broad.mit.edu	37	chr1	159038509	159038509	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caactgattaaaaaatgaaaGacatggccaataagcatata	6	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159038509	A	A	159038509	1	1	116	0	1	0	0	0	0	0	0	0	432	957	33	4		4	AIM2	1	159038509	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	310	159038509	90212112	137	109133											
FCER1A	2205	broad.mit.edu	37	chr1	159272631	159272631	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacactaatgtatcctctcTggacttttgcagctccagat	8	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159272631	C	C	159272631	1	2	116	0	1	0	0	0	0	0	0	0	5831	1595	55	5		5	FCER1A	1	159272631	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	234122	159272631	89977990	138	109134											
OR10J3	441911	broad.mit.edu	37	chr1	159284112	159284112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgactgtgagcaggaagCagttgttgatgccaaaggtg	14	7	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159284112	A	A	159284112	3	1	116	1	0	0	0	0	1	0	0	0	11005	710	25	3	653	3	OR10J3	1	159284112	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	11481	159284112	89966509	139	109135											
APCS	325	broad.mit.edu	37	chr1	159558031	159558031	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctcgtgcctacagcctcTtctcctacaatacccaaggc	5	17	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159558031	C	C	159558031	3	2	116	1	0	0	0	0	1	0	0	0	769	1609	56	5	211	5	APCS	1	159558031	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	273919	159558031	89692590	140	109136											
CRP	1401	broad.mit.edu	37	chr1	159684159	159684159	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agactgttcatgcagtcttaGaccccacccccatacctcag	6	16	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159684159	A	A	159684159	1	1	116	0	1	0	0	0	0	0	0	0	3927	957	33	4		4	CRP	1	159684159	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	126128	159684159	89566462	141	109137											
SLAMF8	56833	broad.mit.edu	37	chr1	159803141	159803141	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactctcttctctgcctggCactggtgcccctgctcaggt	9	15	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159803141	T	T	159803141	3	4	116	1	0	0	0	0	1	0	0	0	14483	710	25	4	777	4	SLAMF8	1	159803141	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	118982	159803141	89447480	142	109138											
IGSF9	57549	broad.mit.edu	37	chr1	159901753	159901753	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcattgggaggggccctcTcttacatctaaggctggcta	13	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159901753	A	A	159901753	1	1	116	0	1	0	0	0	0	0	0	0	7675	1566	54	5		5	IGSF9	1	159901753	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	98612	159901753	89348868	143	109139											
SLAMF9	89886	broad.mit.edu	37	chr1	159921658	159921658	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagcatagttaggatcTggggtggaagaaaggaggaa	16	3	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159921658	A	A	159921658	1	1	116	0	1	0	0	0	0	0	0	0	14484	1594	55	5		5	SLAMF9	1	159921658	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	19905	159921658	89328963	144	109140											
PIGM	93183	broad.mit.edu	37	chr1	160000083	160000083	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttcctagaaggtggacCtcaattattgtgtccctttt	9	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160000083	A	A	160000083	1	1	116	0	1	0	0	0	0	0	0	0	11987	696	24	2		2	PIGM	1	160000083	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	78425	160000083	89250538	145	109141											
ATP1A4	480	broad.mit.edu	37	chr1	160129081	160129081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaacagatgtgtaaatttGtttctctcagtctgtcagtg	9	7	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160129081	T	T	160129081	1	4	116	0	1	0	0	0	0	0	0	0	1135	1392	48	3		3	ATP1A4	1	160129081	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	128998	160129081	89121540	146	109142											
ATP1A4	480	broad.mit.edu	37	chr1	160156347	160156347	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccatctgaccctcagtgcCctgtgttccagacctcccac	6	19	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160156347	T	T	160156347	1	4	116	0	1	0	0	0	0	0	0	0	1135	638	22	4		4	ATP1A4	1	160156347	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	27266	160156347	89094274	147	109143											
VANGL2	57216	broad.mit.edu	37	chr1	160388710	160388710	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttctctgtctcctgtcccCtcaccctttctcctgtttcc	3	19	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160388710	T	T	160388710	1	4	116	0	1	0	0	0	0	0	0	0	17247	696	24	4		4	VANGL2	1	160388710	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	232363	160388710	88861911	148	109144											
LY9	4063	broad.mit.edu	37	chr1	160793746	160793746	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccatgtttaccaaacctTgggatcctgtggaacgaggg	12	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160793746	A	A	160793746	1	1	116	0	1	0	0	0	0	0	0	0	9189	1827	63	5		5	LY9	1	160793746	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	405036	160793746	88456875	149	109145											
USF1	7391	broad.mit.edu	37	chr1	161009949	161009949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcaaactgggtcagtggCtagcagaactgagaagggct	15	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161009949	A	A	161009949	1	1	116	0	1	0	0	0	0	0	0	0	17158	812	28	3		3	USF1	1	161009949	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	216203	161009949	88240672	150	109146											
ADAMTS4	9507	broad.mit.edu	37	chr1	161161117	161161117	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaaggctgggccagtggCccatggcctgacagtgtctc	14	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161161117	T	T	161161117	2	4	116	1	0	0	0	0	0	0	0	1	268	726	26	4		4	ADAMTS4	1	161161117	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	151168	161161117	88089504	151	109147											
ADAMTS4	9507	broad.mit.edu	37	chr1	161165959	161165959	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcatccacccctactttAcccagttcatgagcagcagt	5	15	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161165959	T	T	161165959	5	4	116	1	0	0	0	0	0	0	1	0	268	405	14	5	1449	5	ADAMTS4	1	161165959	Splice_Site	SNP	A	TCGA-44-3918-01A-01D-1105-08	4842	161165959	88084662	152	109148											
FCER1G	2207	broad.mit.edu	37	chr1	161187846	161187846	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatggaattgtcctcacCctcctctactgtcgactgaa	7	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161187846	A	A	161187846	2	1	116	1	0	0	0	0	0	0	0	1	5832	610	22	2		2	FCER1G	1	161187846	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	21887	161187846	88062775	153	109149											
NR1I3	9970	broad.mit.edu	37	chr1	161202960	161202960	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatcctgtcggtgctcaccCtaaactgcacaaactgttca	6	13	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161202960	T	T	161202960	3	4	116	1	0	0	0	0	1	0	0	0	10716	695	24	4	785	4	NR1I3	1	161202960	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	15114	161202960	88047661	154	109150											
FCGR2A	2212	broad.mit.edu	37	chr1	161483836	161483836	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagactgggcctgaaaactcCtgagcaaacaaagccaccca	9	13	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161483836	G	G	161483836	1	3	116	0	1	0	0	0	0	0	0	0	5838	696	24	4		4	FCGR2A	1	161483836	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	280876	161483836	87766785	155	109151											
LMX1A	4009	broad.mit.edu	37	chr1	165218611	165218611	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaactccactctacccacCccaccgcagccctgcccacc	3	26	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165218611	T	T	165218611	1	4	116	0	1	0	0	0	0	0	0	0	8935	638	22	4		4	LMX1A	1	165218611	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3734775	165218611	84032010	156	109152											
ILDR2	387597	broad.mit.edu	37	chr1	166904654	166904654	+	Frame_Shift_Del	DEL	C	-	-													cagaggggatggagtaagggCcggggacaccggagacagag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	166904654	-	-	166904654	7	5	116	1	0	1	0	1	0	0	0	0	7780	739	26	0	1175	0	ILDR2	1	166904654	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	1686043	166904654	82345967	157	109153											
XCL2	6846	broad.mit.edu	37	chr1	168510386	168510386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggaaaagacagatgaaGttagccacgttctcaaagcc	10	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168510386	T	T	168510386	1	4	116	0	1	0	0	0	0	0	0	0	17551	1044	36	3		3	XCL2	1	168510386	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1605732	168510386	80740235	158	109154											
PRRX1	5396	broad.mit.edu	37	chr1	170695491	170695491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcccatcgtacctcgtcCtgctccgagacccaccgatt	8	18	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170695491	A	A	170695491	3	1	116	1	0	0	0	0	1	0	0	0	12718	681	24	2	558	2	PRRX1	1	170695491	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2185105	170695491	78555130	159	109155											
PRRX1	5396	broad.mit.edu	37	chr1	170699234	170699234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattatttacctgaagtgcCatttccagagggagggctgg	13	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170699234	A	A	170699234	1	1	116	0	1	0	0	0	0	0	0	0	12718	609	21	2		2	PRRX1	1	170699234	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3743	170699234	78551387	160	109156											
PRDX6	9588	broad.mit.edu	37	chr1	173455406	173455406	+	Frame_Shift_Del	DEL	G	-	-													ctttacaggtgtttgtttttGgtcctgataagaagctgaag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	173455406	-	-	173455406	7	5	116	1	0	1	0	1	0	0	0	0	12575	1348	47	0	426	0	PRDX6	1	173455406	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	2756172	173455406	75795215	161	109157											
TNN	63923	broad.mit.edu	37	chr1	175053004	175053004	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgatatggccccatgacAggacaggaggtagctgaggt	15	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175053004	T	T	175053004	2	4	116	1	0	0	0	0	0	0	0	1	16446	175	7	5		5	TNN	1	175053004	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	1597598	175053004	74197617	162	109158											
TNN	63923	broad.mit.edu	37	chr1	175067651	175067651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcctgacaggcctgagacCgggtatggagtacatggtgc	15	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175067651	A	A	175067651	3	1	116	1	0	0	0	0	1	0	0	0	16446	652	23	1	2069	1	TNN	1	175067651	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	14647	175067651	74182970	163	109159											
TNN	63923	broad.mit.edu	37	chr1	175087879	175087879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctgacgggcctgaggCcgggcatggagtacacggtg	17	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175087879	A	A	175087879	3	1	116	1	0	0	0	0	1	0	0	0	16446	739	26	3	2607	3	TNN	1	175087879	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	20228	175087879	74162742	164	109160											
TNN	63923	broad.mit.edu	37	chr1	175092742	175092742	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggagtacatggtgcacGtgtgggcccagaagggggcc	18	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175092742	T	T	175092742	3	4	116	1	0	0	0	0	1	0	0	0	16446	1145	40	3	2899	3	TNN	1	175092742	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4863	175092742	74157879	165	109161											
TNN	63923	broad.mit.edu	37	chr1	175096310	175096310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcatttgctggcctcaCggcaacttgctgatctttac	8	13	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175096310	A	A	175096310	1	1	116	0	1	0	0	0	0	0	0	0	16446	551	19	3		3	TNN	1	175096310	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3568	175096310	74154311	166	109162											
TNR	7143	broad.mit.edu	37	chr1	175299342	175299342	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagctcatagcggccctGggatgtgatcctgtgtatat	13	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175299342	A	A	175299342	4	1	116	1	0	0	0	0	0	1	0	0	16461	1357	47	4	427	4	TNR	1	175299342	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	203032	175299342	73951279	167	109163											
TNR	7143	broad.mit.edu	37	chr1	175334926	175334926	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccaaaggaaatggaacatTggaagagtgacttgcctgaa	11	7	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334926	A	A	175334926	1	1	116	0	1	0	0	0	0	0	0	0	16461	1827	63	5		5	TNR	1	175334926	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	35584	175334926	73915695	168	109164											
TNR	7143	broad.mit.edu	37	chr1	175363182	175363182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccagacacagtgagtcCcaggtgcagaatcaacccac	9	14	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175363182	A	A	175363182	1	1	116	0	1	0	0	0	0	0	0	0	16461	638	22	2		2	TNR	1	175363182	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	28256	175363182	73887439	169	109165											
ASTN1	460	broad.mit.edu	37	chr1	176926736	176926736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcacatttttccctatGtatctgtattgtgtcttccc	5	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176926736	T	T	176926736	1	4	116	0	1	0	0	0	0	0	0	0	1068	1392	48	3		3	ASTN1	1	176926736	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1563554	176926736	72323885	170	109166											
ASTN1	460	broad.mit.edu	37	chr1	177002012	177002012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaggaccacagatggatGtgggaagatgggtaggctct	17	5	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177002012	T	T	177002012	1	4	116	0	1	0	0	0	0	0	0	0	1068	1392	48	3		3	ASTN1	1	177002012	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	75276	177002012	72248609	171	109167											
LHX4	89884	broad.mit.edu	37	chr1	180241153	180241153	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttccgaggtgagcagggcTggaggggccaggccgaggcc	20	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180241153	A	A	180241153	1	1	116	0	1	0	0	0	0	0	0	0	8845	1595	55	5		5	LHX4	1	180241153	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	3239141	180241153	69009468	172	109168											
GLUL	2752	broad.mit.edu	37	chr1	182354738	182354738	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacaaagctaactgctcactCcaactcagaatctcctaaac	3	14	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182354738	A	A	182354738	1	1	116	0	1	0	0	0	0	0	0	0	6542	870	30	3		3	GLUL	1	182354738	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2113585	182354738	66895883	173	109169											
RGS16	6004	broad.mit.edu	37	chr1	182572554	182572554	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttatgggtcccagaagagCtctgggtggtgccacccaaa	13	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182572554	G	G	182572554	1	3	116	0	1	0	0	0	0	0	0	0	13407	812	28	4		4	RGS16	1	182572554	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	217816	182572554	66678067	174	109170											
LAMC1	3915	broad.mit.edu	37	chr1	183096318	183096318	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaattaagagatatactcttCcttcttttgctaattatgta	5	6	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183096318	T	T	183096318	1	4	116	0	1	0	0	0	0	0	0	0	8686	870	30	4		4	LAMC1	1	183096318	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	523764	183096318	66154303	175	109171											
GLT25D2	23127	broad.mit.edu	37	chr1	183913489	183913489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagtaggaagataccctaTgaaaagtttgaaacccaatt	7	7	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183913489	A	A	183913489	1	1	116	0	1	0	0	0	0	0	0	0	6531	1479	51	5		5	GLT25D2	1	183913489	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	817171	183913489	65337132	176	109172											
GLT25D2	23127	broad.mit.edu	37	chr1	183920059	183920059	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccgaagagacttagagcCccacctgggactaactctct	9	13	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183920059	A	A	183920059	1	1	116	0	1	0	0	0	0	0	0	0	6531	638	22	2		2	GLT25D2	1	183920059	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6570	183920059	65330562	177	109173											
HMCN1	83872	broad.mit.edu	37	chr1	185704281	185704281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtttcaaaaccattttAaaaaaatgtgcagctgaaaa	7	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185704281	T	T	185704281	1	4	116	0	1	0	0	0	0	0	0	0	7287	377	13	5		5	HMCN1	1	185704281	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1784222	185704281	63546340	178	109174											
PLA2G4A	5321	broad.mit.edu	37	chr1	186934605	186934605	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaaaagattcatgtagtGgacagtgggctcacatttaa	10	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186934605	T	T	186934605	2	4	116	1	0	0	0	0	0	0	0	1	12096	1335	47	2		2	PLA2G4A	1	186934605	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1230324	186934605	62316016	179	109175											
FAM5C	339479	broad.mit.edu	37	chr1	190067155	190067155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacatttatggttaactaCataatttggtcgtgtcataa	7	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067155	A	A	190067155	3	1	116	1	0	0	0	0	1	0	0	0	5645	478	17	3	10	3	FAM5C	1	190067155	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3132550	190067155	59183466	180	109176											
FAM5C	339479	broad.mit.edu	37	chr1	190203541	190203541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggactctgaaccagaaCagaactgacagaatctaggt	9	10	3	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190203541	T	T	190203541	3	4	116	1	0	0	0	0	1	0	0	0	5645	478	17	4	1631	4	FAM5C	1	190203541	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	136386	190203541	59047080	181	109177											
FAM5C	339479	broad.mit.edu	37	chr1	190234069	190234069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcaatgaaataagaagCggctagctgatgtagcgtct	11	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190234069	A	A	190234069	3	1	116	1	0	0	0	0	1	0	0	0	5645	768	27	3	1776	3	FAM5C	1	190234069	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	30528	190234069	59016552	182	109178											
RGS1	5996	broad.mit.edu	37	chr1	192544976	192544976	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacaaaatgccaggaatgttCttctctgctaacccaaagga	8	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192544976	A	A	192544976	3	1	116	1	0	0	0	0	1	0	0	0	13401	912	32	3	56	3	RGS1	1	192544976	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2310907	192544976	56705645	183	109179											
CFHR4	10877	broad.mit.edu	37	chr1	196871708	196871708	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgggattacattcattgCacacaagatggttggtcacc	9	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196871708	A	A	196871708	4	1	116	1	0	0	0	0	0	1	0	0	3317	718	25	3	225	3	CFHR4	1	196871708	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4326732	196871708	52378913	184	109180											
PTPRC	5788	broad.mit.edu	37	chr1	198671480	198671480	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattgcccttgcgtgacagaCacaagtgacagtgctgatgg	12	9	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198671480	G	G	198671480	1	3	116	0	1	0	0	0	0	0	0	0	12905	493	17	4		4	PTPRC	1	198671480	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1799772	198671480	50579141	185	109181											
PTPRC	5788	broad.mit.edu	37	chr1	198677229	198677229	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatacacattatgaaataCtaatcaagtttatttctgta	5	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198677229	G	G	198677229	1	3	116	0	1	0	0	0	0	0	0	0	12905	580	20	4		4	PTPRC	1	198677229	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5749	198677229	50573392	186	109182											
NR5A2	2494	broad.mit.edu	37	chr1	200008740	200008740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcaggcatcccggtcgccCcttccttcttttcgccggag	10	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200008740	A	A	200008740	1	1	116	0	1	0	0	0	0	0	0	0	10731	638	22	2		2	NR5A2	1	200008740	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1331511	200008740	49241881	187	109183											
NR5A2	2494	broad.mit.edu	37	chr1	200018042	200018042	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgctgaaaatatgtgttCcttaattttctactttgtat	7	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200018042	A	A	200018042	1	1	116	0	1	0	0	0	0	0	0	0	10731	870	30	3		3	NR5A2	1	200018042	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	9302	200018042	49232579	188	109184											
CACNA1S	779	broad.mit.edu	37	chr1	201016619	201016619	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactcccattccttggctgCttctggactctggtccccca	7	18	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201016619	T	T	201016619	1	4	116	0	1	0	0	0	0	0	0	0	2573	812	28	4		4	CACNA1S	1	201016619	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	998577	201016619	48234002	189	109185											
CACNA1S	779	broad.mit.edu	37	chr1	201039427	201039427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggggctgaagatgaagaagGagctggcttctggaatgggc	18	5	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201039427	C	C	201039427	3	2	116	1	0	0	0	0	1	0	0	0	2573	1174	41	4	3400	4	CACNA1S	1	201039427	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	22808	201039427	48211194	190	109186											
TNNT2	7139	broad.mit.edu	37	chr1	201328681	201328681	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggccctccaaggaggaaTgggatagctggaaggtaggg	19	6	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201328681	A	A	201328681	1	1	116	0	1	0	0	0	0	0	0	0	16454	1479	51	5		5	TNNT2	1	201328681	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	289254	201328681	47921940	191	109187											
IPO9	55705	broad.mit.edu	37	chr1	201832721	201832721	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagttcgaatttctgcagtGagagccatctgggggtgagt	14	7	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201832721	C	C	201832721	2	2	116	1	0	0	0	0	0	0	0	1	7869	1277	45	4		4	IPO9	1	201832721	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	504040	201832721	47417900	192	109188											
PPP1R12B	4660	broad.mit.edu	37	chr1	202391829	202391829	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgcagaagagccagcCatgaaggatcttcttctgga	11	10	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202391829	T	T	202391829	2	4	116	1	0	0	0	0	0	0	0	1	12456	581	21	4		4	PPP1R12B	1	202391829	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	559108	202391829	46858792	193	109189											
PPP1R12B	4660	broad.mit.edu	37	chr1	202391853	202391853	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggatcttcttctggagcaAgtaaagaagcaaggtaacct	10	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202391853	T	T	202391853	3	4	116	1	0	0	0	0	1	0	0	0	12456	69	3	5	538	5	PPP1R12B	1	202391853	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	24	202391853	46858768	194	109190											
MYOG	4656	broad.mit.edu	37	chr1	203055095	203055095	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcatacagctccatggggtCggaaaaggcttgttcctgcc	11	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203055095	A	A	203055095	1	1	116	0	1	0	0	0	0	0	0	0	10184	899	31	3		3	MYOG	1	203055095	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	663242	203055095	46195526	195	109191											
MYBPH	4608	broad.mit.edu	37	chr1	203144911	203144911	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggctggggggccagggtgGagtgtgcaggggtcagccgt	22	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203144911	C	C	203144911	1	2	116	0	1	0	0	0	0	0	0	0	10108	1189	41	4		4	MYBPH	1	203144911	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	89816	203144911	46105710	196	109192											
CHIT1	1118	broad.mit.edu	37	chr1	203194102	203194102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggcctgattccctgacCagggctccctctggccagtg	12	16	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203194102	A	A	203194102	1	1	116	0	1	0	0	0	0	0	0	0	3377	609	21	2		2	CHIT1	1	203194102	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	49191	203194102	46056519	197	109193											
SOX13	9580	broad.mit.edu	37	chr1	204085496	204085496	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcaagcatcttgtgtcatCatctctgtggctcagcccct	9	13	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204085496	T	T	204085496	1	4	116	0	1	0	0	0	0	0	0	0	15058	841	29	4		4	SOX13	1	204085496	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	891394	204085496	45165125	198	109194											
NFASC	23114	broad.mit.edu	37	chr1	204978640	204978640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccctcctcaccatctcCcccatgaaatcattcacggg	4	18	5	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204978640	A	A	204978640	1	1	116	0	1	0	0	0	0	0	0	0	10454	638	22	2		2	NFASC	1	204978640	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	893144	204978640	44271981	199	109195											
CNTN2	6900	broad.mit.edu	37	chr1	205042741	205042741	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacaagggtggggctaGggtagtcccaggcccagctg	16	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205042741	C	C	205042741	1	2	116	0	1	0	0	0	0	0	0	0	3673	1015	35	4		4	CNTN2	1	205042741	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	64101	205042741	44207880	200	109196											
DSTYK	25778	broad.mit.edu	37	chr1	205138360	205138360	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaagtgtctcaacaatcaTatccttcatttcctcctgct	3	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205138360	C	C	205138360	3	2	116	1	0	0	0	0	1	0	0	0	4825	1406	49	5	1578	5	DSTYK	1	205138360	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	95619	205138360	44112261	201	109197											
CR1	1378	broad.mit.edu	37	chr1	207751170	207751170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattccttgtgggctacccCcaaccatcgccaatggagat	9	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207751170	A	A	207751170	3	1	116	1	0	0	0	0	1	0	0	0	3872	623	22	2	4672	2	CR1	1	207751170	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2612810	207751170	41499451	202	109198											
CD34	947	broad.mit.edu	37	chr1	208072592	208072592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagagaccaaaacatgGgtgtgcatgtgtgcatgtgc	14	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208072592	T	T	208072592	1	4	116	0	1	0	0	0	0	0	0	0	3036	1247	43	2		2	CD34	1	208072592	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	321422	208072592	41178029	203	109199											
HSD11B1	3290	broad.mit.edu	37	chr1	209880128	209880129	+	Missense_Mutation	DNP	CG	TC	TC													accatggaagacatgaccttCgcagagcaatttgttgccca							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	209880129	TC	TC	209880128	3	4	116	1	0	0	0	0	1	0	0	0	7442	883	31	4	304	4	HSD11B1	1	209880128	Missense_Mutation	DNP	CG	TCGA-44-3918-01A-01D-1105-08	1807536	209880128	39370493	204	109200											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209933490	209933490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtgaaagccgccgctgcCgtcccaatgtgaccacttgc	10	16	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209933490	A	A	209933490	3	1	116	1	0	0	0	0	1	0	0	0	16566	652	23	1	108	1	TRAF3IP3	1	209933490	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	53362	209933490	39317131	205	109201											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209936109	209936109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtccctccccacttccCtcacttcctccctgtaagtt	3	21	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209936109	A	A	209936109	1	1	116	0	1	0	0	0	0	0	0	0	16566	696	24	2		2	TRAF3IP3	1	209936109	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2619	209936109	39314512	206	109202											
C1orf74	148304	broad.mit.edu	37	chr1	209956858	209956858	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggccacagccagcacctctCcagctaagtgaaggcagatg	12	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209956858	G	G	209956858	3	3	116	1	0	0	0	0	1	0	0	0	2080	855	30	4	691	4	C1orf74	1	209956858	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	20749	209956858	39293763	207	109203											
C1orf107	27042	broad.mit.edu	37	chr1	210012182	210012182	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggagctttttagctccacttCctcagcagtttcacctcaag	7	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210012182	T	T	210012182	1	4	116	0	1	0	0	0	0	0	0	0	2001	870	30	4		4	C1orf107	1	210012182	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	55324	210012182	39238439	208	109204											
SYT14	255928	broad.mit.edu	37	chr1	210267766	210267766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccatctgtcatgtacacCctcagaaattggggacagta	8	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210267766	A	A	210267766	3	1	116	1	0	0	0	0	1	0	0	0	15589	623	22	2	699	2	SYT14	1	210267766	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	255584	210267766	38982855	209	109205											
KCNH1	3756	broad.mit.edu	37	chr1	210857003	210857003	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctgacgcttttgtcctctCgggaagtgtctccatcgact	10	13	2	1	rs148523415		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210857003	T	T	210857003	3	4	116	1	0	0	0	0	1	0	0	0	8101	893	31	4	383	4	KCNH1	1	210857003	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	589237	210857003	38393618	210	109206											
USH2A	7399	broad.mit.edu	37	chr1	215807871	215807871	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagaggtaccaagggaggtCtttctctgatatatggctct	12	7	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215807871	A	A	215807871	3	1	116	1	0	0	0	0	1	0	0	0	17162	913	32	3	393	3	USH2A	1	215807871	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4950868	215807871	33442750	211	109207											
USH2A	7399	broad.mit.edu	37	chr1	215901708	215901708	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaataaaacagactcctcTtcaatgccagcagggcgtct	7	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215901708	C	C	215901708	2	2	116	1	0	0	0	0	0	0	0	1	17162	1606	56	5		5	USH2A	1	215901708	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	93837	215901708	33348913	212	109208											
USH2A	7399	broad.mit.edu	37	chr1	215972391	215972391	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtttcctgaggtggagtaCggcattctgccacagcagga	14	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215972391	A	A	215972391	2	1	116	1	0	0	0	0	0	0	0	1	17162	523	19	3		3	USH2A	1	215972391	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	70683	215972391	33278230	213	109209											
USH2A	7399	broad.mit.edu	37	chr1	216166501	216166502	+	Frame_Shift_Del	DEL	TG	-	-													ctcactgtgcacccaccaccTgtgcaagcctaaacagagat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216166502	-	-	216166501	7	5	116	1	0	1	0	1	0	0	0	0	17162	1567	55	0	9094	0	USH2A	1	216166501	Frame_Shift_Del	DEL	TG	TCGA-44-3918-01A-01D-1105-08	194110	216166501	33084120	214	109210											
USH2A	7399	broad.mit.edu	37	chr1	216420298	216420298	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcttgcagatgcactgcCctgtcttagcattacagaca	10	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216420298	T	T	216420298	3	4	116	1	0	0	0	0	1	0	0	0	17162	623	22	4	13424	4	USH2A	1	216420298	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	253797	216420298	32830323	215	109211											
USH2A	7399	broad.mit.edu	37	chr1	216498839	216498839	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcattaggaatgcagtaCcgctgtgccaaagggtggac	13	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216498839	A	A	216498839	2	1	116	1	0	0	0	0	0	0	0	1	17162	494	18	3		3	USH2A	1	216498839	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	78541	216498839	32751782	216	109212											
SPATA17	128153	broad.mit.edu	37	chr1	217947839	217947839	+	Frame_Shift_Del	DEL	G	-	-													aagcgcccgttcttttcctcGgtctgaaattctaccaccta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	217947839	-	-	217947839	7	5	116	1	0	1	0	1	0	0	0	0	15118	1116	39	0	709	0	SPATA17	1	217947839	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	1449000	217947839	31302782	217	109213											
TGFB2	7042	broad.mit.edu	37	chr1	218609453	218609453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacaacagaccaaccggcGgaagaagcgtgctttggatg	13	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218609453	T	T	218609453	3	4	116	1	0	0	0	0	1	0	0	0	15941	1116	39	1	1002	1	TGFB2	1	218609453	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	661614	218609453	30641168	218	109214											
BPNT1	10380	broad.mit.edu	37	chr1	220246039	220246039	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctaaatccatatggttgcCtgatacttccatgttggctc	7	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220246039	A	A	220246039	1	1	116	0	1	0	0	0	0	0	0	0	1503	696	24	2		2	BPNT1	1	220246039	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1636586	220246039	29004582	219	109215											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220440457	220440457	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatttgcaatttcaagctctCcagctgatccaagaagtaag	7	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220440457	A	A	220440457	1	1	116	0	1	0	0	0	0	0	0	0	13044	870	30	3		3	RAB3GAP2	1	220440457	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	194418	220440457	28810164	220	109216											
MOSC2	54996	broad.mit.edu	37	chr1	220936224	220936224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccattttgtggagtggtggGgcctgactatcctgtgttct	14	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220936224	T	T	220936224	1	4	116	0	1	0	0	0	0	0	0	0	9808	1247	43	2		2	MOSC2	1	220936224	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	495767	220936224	28314397	221	109217											
HHIPL2	79802	broad.mit.edu	37	chr1	222715345	222715345	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacaagggcccggcccccatCcagcttacttgttctgagca	10	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222715345	T	T	222715345	1	4	116	0	1	0	0	0	0	0	0	0	7161	870	30	4		4	HHIPL2	1	222715345	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1779121	222715345	26535276	222	109218											
HHIPL2	79802	broad.mit.edu	37	chr1	222715445	222715445	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagccatccaggccaaaaaGaagttgtccgccattatggt	9	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222715445	T	T	222715445	3	4	116	1	0	0	0	0	1	0	0	0	7161	942	33	3	1175	3	HHIPL2	1	222715445	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	100	222715445	26535176	223	109219											
FAM177B	400823	broad.mit.edu	37	chr1	222923200	222923200	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacatgggcattatatacaaGagggggagttcagaggtctt	13	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222923200	T	T	222923200	1	4	116	0	1	0	0	0	0	0	0	0	5547	957	33	3		3	FAM177B	1	222923200	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	207755	222923200	26327421	224	109220											
DISP1	84976	broad.mit.edu	37	chr1	223176687	223176687	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaattacgttttgatggtcAcatggcttccagcagttgtt	10	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223176687	G	G	223176687	3	3	116	1	0	0	0	0	1	0	0	0	4579	159	6	5	1974	5	DISP1	1	223176687	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	253487	223176687	26073934	225	109221											
CAPN2	824	broad.mit.edu	37	chr1	223934731	223934731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaagcgctatcaggggGtgccaccactgagggcttcg	14	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223934731	T	T	223934731	3	4	116	1	0	0	0	0	1	0	0	0	2653	1261	44	3	618	3	CAPN2	1	223934731	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	758044	223934731	25315890	226	109222											
LIN9	286826	broad.mit.edu	37	chr1	226475278	226475278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaataagatcaaagtagaCctatagaaaatgttgtagct	7	4	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226475278	A	A	226475278	1	1	116	0	1	0	0	0	0	0	0	0	8886	522	18	3		3	LIN9	1	226475278	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2540547	226475278	22775343	227	109223											
PRSS38	339501	broad.mit.edu	37	chr1	228003800	228003800	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccctgcagcctgtggtcGgcccagcatggaggggaaaa	14	12	1	0	rs144830766	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228003800	T	T	228003800	3	4	116	1	0	0	0	0	1	0	0	0	12733	1116	39	1	164	1	PRSS38	1	228003800	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1528522	228003800	21246821	228	109224											
OBSCN	84033	broad.mit.edu	37	chr1	228548050	228548050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccactgtggtggccctgGgcctggcgcccctgatgacc	13	16	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228548050	T	T	228548050	1	4	116	0	1	0	0	0	0	0	0	0	10907	1232	43	2		2	OBSCN	1	228548050	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	544250	228548050	20702571	229	109225											
ACTA1	58	broad.mit.edu	37	chr1	229567954	229567954	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcggagggcagaagcaggaGaggagccctcactcaggggc	18	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229567954	A	A	229567954	1	1	116	0	1	0	0	0	0	0	0	0	191	957	33	4		4	ACTA1	1	229567954	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1019904	229567954	19682667	230	109226											
SLC35F3	148641	broad.mit.edu	37	chr1	234458700	234458700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccctgcccactctccaGggacatgcccccaaccctgc	8	21	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234458700	T	T	234458700	1	4	116	0	1	0	0	0	0	0	0	0	14704	1015	35	2		2	SLC35F3	1	234458700	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4890746	234458700	14791921	231	109227											
LYST	1130	broad.mit.edu	37	chr1	235878603	235878603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatagtgatagggctgcaCgggaggcatggggtcatctt	16	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235878603	A	A	235878603	3	1	116	1	0	0	0	0	1	0	0	0	9216	536	19	3	1771	3	LYST	1	235878603	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1419903	235878603	13372018	232	109228											
LYST	1130	broad.mit.edu	37	chr1	235879978	235879978	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaacaaaacacaatttttCatttaataaagtacgagtaa	3	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235879978	T	T	235879978	1	4	116	0	1	0	0	0	0	0	0	0	9216	841	29	4		4	LYST	1	235879978	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1375	235879978	13370643	233	109229											
EDARADD	128178	broad.mit.edu	37	chr1	236631367	236631367	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgctcgtattctagagggaGatgctgagttcacctcccat	11	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236631367	T	T	236631367	1	4	116	0	1	0	0	0	0	0	0	0	4946	957	33	3		3	EDARADD	1	236631367	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	751389	236631367	12619254	234	109230											
ACTN2	88	broad.mit.edu	37	chr1	236891068	236891068	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaacaaggttattctgggTggcctggcatgcagtgtccc	12	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236891068	A	A	236891068	1	1	116	0	1	0	0	0	0	0	0	0	205	1711	59	5		5	ACTN2	1	236891068	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	259701	236891068	12359553	235	109231											
MTR	4548	broad.mit.edu	37	chr1	237023177	237023177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcattcagactgatgagtgGagaaatggccctgtcgaaga	13	7	2	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237023177	T	T	237023177	3	4	116	1	0	0	0	0	1	0	0	0	10052	1183	41	3	2072	3	MTR	1	237023177	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	132109	237023177	12227444	236	109232											
RYR2	6262	broad.mit.edu	37	chr1	237993770	237993770	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccctacatggcgagttGtgttttccttttgttttgct	9	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237993770	C	C	237993770	1	2	116	0	1	0	0	0	0	0	0	0	13880	1392	48	4		4	RYR2	1	237993770	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	970593	237993770	11256851	237	109233			1	87		3	3	103	N	G_C_A	2.379914e-05
RYR2	6262	broad.mit.edu	37	chr1	237993832	237993832	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccctttgttttctagacCaaatgcttcatctgtgggat	7	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237993832	T	T	237993832	2	4	116	1	0	0	0	0	0	0	0	1	13880	581	21	4		4	RYR2	1	237993832	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	62	237993832	11256789	238	109234			1	87		3	3	103	N	G_C_A	2.379914e-05
RYR2	6262	broad.mit.edu	37	chr1	237993872	237993872	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggcaatgattacttcgacAcagtgccacatggctttgaa	9	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237993872	G	G	237993872	3	3	116	1	0	0	0	0	1	0	0	0	13880	159	6	5	15108	5	RYR2	1	237993872	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	40	237993872	11256749	239	109235			1	87		3	3	103	N	G_C_A	2.379914e-05
CHRM3	1131	broad.mit.edu	37	chr1	240070814	240070814	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatcagctcctcctggatAcacagcccctccgatgcagg	8	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240070814	T	T	240070814	2	4	116	1	0	0	0	0	0	0	0	1	3409	381	14	5		5	CHRM3	1	240070814	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	2076942	240070814	9179807	240	109236											
FMN2	56776	broad.mit.edu	37	chr1	240308465	240308465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccagcgctggtcgataCagggatgtgtccttctcccc	10	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240308465	A	A	240308465	1	1	116	0	1	0	0	0	0	0	0	0	6008	493	17	3		3	FMN2	1	240308465	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	237651	240308465	8942156	241	109237											
FMN2	56776	broad.mit.edu	37	chr1	240492642	240492642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggctttatttccttaggttCctttatgaactgtcactaat	6	8	1	1	rs143591952		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240492642	A	A	240492642	3	1	116	1	0	0	0	0	1	0	0	0	6008	854	30	3	4349	3	FMN2	1	240492642	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	184177	240492642	8757979	242	109238											
RGS7	6000	broad.mit.edu	37	chr1	240969527	240969527	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatccaagttaatagcactGggggctccgggagccagaaa	13	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240969527	T	T	240969527	2	4	116	1	0	0	0	0	0	0	0	1	13419	1335	47	2		2	RGS7	1	240969527	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	476885	240969527	8281094	243	109239											
RGS7	6000	broad.mit.edu	37	chr1	241161967	241161967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgcaaacaagccaggcCaaaagggttcaacatttaca	7	11	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241161967	A	A	241161967	1	1	116	0	1	0	0	0	0	0	0	0	13419	609	21	2		2	RGS7	1	241161967	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	192440	241161967	8088654	244	109240											
ZNF238	10472	broad.mit.edu	37	chr1	244217639	244217639	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaagggacttggcggccgAgcctgggaacatgtggatgc	16	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244217639	T	T	244217639	3	4	116	1	0	0	0	0	1	0	0	0	17916	304	11	5	569	5	ZNF238	1	244217639	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	3055672	244217639	5032982	245	109241											
ZNF496	84838	broad.mit.edu	37	chr1	247492745	247492745	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggtagcggaaacggcGgaagagacgccgagaggact	16	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247492745	A	A	247492745	3	1	116	1	0	0	0	0	1	0	0	0	18072	1116	39	4	1655	4	ZNF496	1	247492745	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3275106	247492745	1757876	246	109242											
NLRP3	114548	broad.mit.edu	37	chr1	247607998	247607998	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgctgctgggatctttcCacacttctgacctccagcca	7	16	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247607998	A	A	247607998	2	1	116	1	0	0	0	0	0	0	0	1	10573	581	21	2		2	NLRP3	1	247607998	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	115253	247607998	1642623	247	109243											
OR2G2	81470	broad.mit.edu	37	chr1	247751604	247751604	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acattgtcactcatttaaccCtatgtgatgtgttatctttc	5	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247751604	T	T	247751604	1	4	116	0	1	0	0	0	0	0	0	0	11092	696	24	4		4	OR2G2	1	247751604	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	143606	247751604	1499017	248	109244											
OR2G2	81470	broad.mit.edu	37	chr1	247751945	247751945	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaacccatgaaaactaTcgcctatggtggctgtttgg	13	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247751945	A	A	247751945	3	1	116	1	0	0	0	0	1	0	0	0	11092	1435	50	5	286	5	OR2G2	1	247751945	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	341	247751945	1498676	249	109245											
OR2G3	81469	broad.mit.edu	37	chr1	247769736	247769736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctacaccatggtgaccccCactttaaatcctatcatcta	3	14	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247769736	A	A	247769736	2	1	116	1	0	0	0	0	0	0	0	1	11093	581	21	2		2	OR2G3	1	247769736	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	17791	247769736	1480885	250	109246											
OR6F1	343169	broad.mit.edu	37	chr1	247875180	247875180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcttacttccttattaCgaagcgtatagatgaagggg	9	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247875180	A	A	247875180	3	1	116	1	0	0	0	0	1	0	0	0	11295	536	19	3	52	3	OR6F1	1	247875180	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	105444	247875180	1375441	251	109247											
OR1C1	26188	broad.mit.edu	37	chr1	247921086	247921086	+	Missense_Mutation	SNP	A	T	T													ggatacagacaaggggcgtgAgagccaatagacctcctact							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921086	T	T	247921086	3	4	116	1	0	0	0	0	1	0	0	0	11046	304	11	5	323	5	OR1C1	1	247921086	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	45906	247921086	1329535	252	109248	471	2									
OR1C1	26188	broad.mit.edu	37	chr1	247921090	247921090	+	Missense_Mutation	SNP	C	G	G													acagacaaggggcgtgagagCcaatagacctcctactgcaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247921090	G	G	247921090	3	3	116	1	0	0	0	0	1	0	0	0	11046	739	26	4	327	4	OR1C1	1	247921090	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4	247921090	1329531	253	109249	471	2									
OR14A16	284532	broad.mit.edu	37	chr1	247978262	247978262	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagactctgaagctggcttcAgataagcaatgaatccagtg	11	8	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247978262	T	T	247978262	3	4	116	1	0	0	0	0	1	0	0	0	11039	188	7	5	163	5	OR14A16	1	247978262	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	57172	247978262	1272359	254	109250											
OR11L1	391189	broad.mit.edu	37	chr1	248004595	248004595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagcacggcaattgacaGgatgaagatggtcacctcgg	13	10	1	3	rs144505770		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248004595	T	T	248004595	3	4	116	1	0	0	0	0	1	0	0	0	11024	991	35	2	368	2	OR11L1	1	248004595	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	26333	248004595	1246026	255	109251											
OR11L1	391189	broad.mit.edu	37	chr1	248005254	248005254	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggatgcaaggcgcaaattTatcactggtgatgcttggaa	12	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248005254	A	A	248005254	1	1	116	0	1	0	0	0	0	0	0	0	11024	1769	61	5		5	OR11L1	1	248005254	5'Flank	SNP	T	TCGA-44-3918-01A-01D-1105-08	659	248005254	1245367	256	109252											
TRIM58	25893	broad.mit.edu	37	chr1	248027963	248027963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtcctgtacatggctgCtggaggccaagcactgacga	12	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248027963	A	A	248027963	1	1	116	0	1	0	0	0	0	0	0	0	16656	812	28	3		3	TRIM58	1	248027963	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	22709	248027963	1222658	257	109253											
TRIM58	25893	broad.mit.edu	37	chr1	248031183	248031183	+	Intron	DEL	C	-	-													tgagcaggtatgtgtgctttCtgaattggtgaagggattgg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248031183	-	-	248031183	6	5	116	0	1	1	0	1	0	0	0	0	16656	928	32	0		0	TRIM58	1	248031183	Intron	DEL	C	TCGA-44-3918-01A-01D-1105-08	3220	248031183	1219438	258	109254											
OR2W3	343171	broad.mit.edu	37	chr1	248059604	248059604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggcagaaggccttcgGcacctgcggctcccatctca	12	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059604	T	T	248059604	3	4	116	1	0	0	0	0	1	0	0	0	11127	1203	42	3	718	3	OR2W3	1	248059604	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	28421	248059604	1191017	259	109255											
OR2L8	391190	broad.mit.edu	37	chr1	248112518	248112518	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggcatctatggcctatgAtcgttacattgctatttgct	8	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248112518	G	G	248112518	3	3	116	1	0	0	0	0	1	0	0	0	11103	333	12	5	361	5	OR2L8	1	248112518	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	52914	248112518	1138103	260	109256											
OR2L13	284521	broad.mit.edu	37	chr1	248247088	248247088	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatagaaggctgacacaacCttgtcgtggttagtggacct	11	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248247088	G	G	248247088	1	3	116	0	1	0	0	0	0	0	0	0	11100	696	24	4		4	OR2L13	1	248247088	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	134570	248247088	1003533	261	109257											
OR2L13	284521	broad.mit.edu	37	chr1	248247669	248247669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtcagccgccattttggGcacagtggtggaaaccagca	13	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247669	T	T	248247669	1	4	116	0	1	0	0	0	0	0	0	0	11100	1218	42	3		3	OR2L13	1	248247669	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	581	248247669	1002952	262	109258											
OR2L13	284521	broad.mit.edu	37	chr1	248263401	248263401	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggccttcaccaccatttcaAcacatttaactgtagtgatc	5	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248263401	T	T	248263401	3	4	116	1	0	0	0	0	1	0	0	0	11100	43	2	5	726	5	OR2L13	1	248263401	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	15732	248263401	987220	263	109259											
OR2M2	391194	broad.mit.edu	37	chr1	248343721	248343721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatttgtggacttatggCtaccttctcctggatcctgg	9	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343721	A	A	248343721	3	1	116	1	0	0	0	0	1	0	0	0	11104	797	28	3	436	3	OR2M2	1	248343721	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	80320	248343721	906900	264	109260											
OR2T33	391195	broad.mit.edu	37	chr1	248437219	248437219	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttccggacatacgtactgGgtatgttatcccaggtagtg	12	8	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248437219	T	T	248437219	1	4	116	0	1	0	0	0	0	0	0	0	11118	1247	43	2		2	OR2T33	1	248437219	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	93498	248437219	813402	265	109261											
OR2T33	391195	broad.mit.edu	37	chr1	248437230	248437230	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgtactgggtatgttatcCcaggtagtgattcaaagccc	10	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248437230	A	A	248437230	1	1	116	0	1	0	0	0	0	0	0	0	11118	638	22	2		2	OR2T33	1	248437230	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	11	248437230	813391	266	109262											
OR2T12	127064	broad.mit.edu	37	chr1	248458403	248458403	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatgggaagctcagggtagCaacagcctgcaggaggccgt	15	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248458403	G	G	248458403	3	3	116	1	0	0	0	0	1	0	0	0	11113	710	25	4	487	4	OR2T12	1	248458403	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	21173	248458403	792218	267	109263											
OR2T12	127064	broad.mit.edu	37	chr1	248458652	248458652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtcagccgccattttggGcacagtggtggaaaccagca	13	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248458652	T	T	248458652	3	4	116	1	0	0	0	0	1	0	0	0	11113	1203	42	3	736	3	OR2T12	1	248458652	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	249	248458652	791969	268	109264											
OR2T12	127064	broad.mit.edu	37	chr1	248458805	248458805	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggccagaagcatcatgaAgaggacttggtgggctctgg	17	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248458805	G	G	248458805	3	3	116	1	0	0	0	0	1	0	0	0	11113	72	3	5	889	5	OR2T12	1	248458805	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	153	248458805	791816	269	109265											
OR2G6	391211	broad.mit.edu	37	chr1	248685011	248685011	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggattttcagatcagcctCagctagagaggtttcttttt	10	7	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248685011	G	G	248685011	3	3	116	1	0	0	0	0	1	0	0	0	11094	827	29	4	66	4	OR2G6	1	248685011	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	226206	248685011	565610	270	109266											
SNTG2	54221	broad.mit.edu	37	chr2	1093720	1093720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacgtgcaataccacggaGtaaagatttgaaatagtgtc	9	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1093720	T	T	1093720	1	4	116	0	1	0	0	0	0	0	0	0	14989	1044	36	3		3	SNTG2	2	1093720	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08		1093720	242105653	271	109267											
SNTG2	54221	broad.mit.edu	37	chr2	1205029	1205029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgacattagcaagtgtgCgtgctgtcttctggtagatt	12	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1205029	A	A	1205029	1	1	116	0	1	0	0	0	0	0	0	0	14989	783	27	3		3	SNTG2	2	1205029	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	111309	1205029	241994344	272	109268											
MYT1L	23040	broad.mit.edu	37	chr2	1855465	1855465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaaccatcacagccagGcgtggggcacctacaataaa	9	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1855465	T	T	1855465	3	4	116	1	0	0	0	0	1	0	0	0	10201	1203	42	3	866	3	MYT1L	2	1855465	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	650436	1855465	241343908	273	109269											
MYT1L	23040	broad.mit.edu	37	chr2	1926244	1926244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgatggctttctccagcaGggtcaggttccccttggtca	12	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1926244	T	T	1926244	3	4	116	1	0	0	0	0	1	0	0	0	10201	991	35	2	2321	2	MYT1L	2	1926244	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	70779	1926244	241273129	274	109270											
ALLC	55821	broad.mit.edu	37	chr2	3718823	3718823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagggttgaaggcatccGtgctaagggcacaactcacc	11	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3718823	T	T	3718823	1	4	116	0	1	0	0	0	0	0	0	0	534	1160	40	3		3	ALLC	2	3718823	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1792579	3718823	239480550	275	109271											
ALLC	55821	broad.mit.edu	37	chr2	3729201	3729201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaaccctaatcttaatcCtgaatggtcattccaactac	4	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3729201	A	A	3729201	1	1	116	0	1	0	0	0	0	0	0	0	534	696	24	2		2	ALLC	2	3729201	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	10378	3729201	239470172	276	109272											
CPSF3	51692	broad.mit.edu	37	chr2	9583777	9583777	+	Missense_Mutation	SNP	A	C	C													tgaatttattcgtgctttgaAaccgcctcatgtggttagtc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9583777	C	C	9583777	3	2	116	1	0	0	0	0	1	0	0	0	3858	14	1	5	1267	5	CPSF3	2	9583777	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	5854576	9583777	233615596	277	109273	472	2									
CPSF3	51692	broad.mit.edu	37	chr2	9583780	9583780	+	Missense_Mutation	SNP	C	T	T													atttattcgtgctttgaaacCgcctcatgtggttagtctat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9583780	T	T	9583780	3	4	116	1	0	0	0	0	1	0	0	0	3858	652	23	4	1270	4	CPSF3	2	9583780	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3	9583780	233615593	278	109274	472	2									
GRHL1	29841	broad.mit.edu	37	chr2	10101410	10101410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgctgtgggaatccccCcagcagtgtatcatcctgag	11	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10101410	A	A	10101410	3	1	116	1	0	0	0	0	1	0	0	0	6829	623	22	2	528	2	GRHL1	2	10101410	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	517630	10101410	233097963	279	109275											
C2orf48	348738	broad.mit.edu	37	chr2	10295279	10295279	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaggaagacatcactctcgGatcctgtttgaaaccaacag	8	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10295279	T	T	10295279	1	4	116	0	1	0	0	0	0	0	0	0	2192	1189	41	3		3	C2orf48	2	10295279	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	193869	10295279	232904094	280	109276											
WDR35	57539	broad.mit.edu	37	chr2	20178355	20178355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggttaaaatcaaagaaCggttcttgaatgtcgtcaaa	9	5	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20178355	A	A	20178355	1	1	116	0	1	0	0	0	0	0	0	0	17416	551	19	3		3	WDR35	2	20178355	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	9883076	20178355	223021018	281	109277											
APOB	338	broad.mit.edu	37	chr2	21235092	21235092	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaatgatgccactttgcaGatcagaggtggaggtgaggg	15	5	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21235092	T	T	21235092	3	4	116	1	0	0	0	0	1	0	0	0	787	933	33	3	9059	3	APOB	2	21235092	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1056737	21235092	221964281	282	109278											
C2orf39	92749	broad.mit.edu	37	chr2	26671598	26671598	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccgccgcggaaccagagtCctacctggatttgccgaagc	13	14	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26671598	T	T	26671598	3	4	116	1	0	0	0	0	1	0	0	0	2186	855	30	4	1478	4	C2orf39	2	26671598	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5436506	26671598	216527775	283	109279											
DPYSL5	56896	broad.mit.edu	37	chr2	27164673	27164673	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaagcaggctggctcatctGagatggtgctcatggccttg	13	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27164673	A	A	27164673	1	1	116	0	1	0	0	0	0	0	0	0	4790	1305	45	4		4	DPYSL5	2	27164673	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	493075	27164673	216034700	284	109280											
C2orf53	339779	broad.mit.edu	37	chr2	27361199	27361199	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgttttgaggcaacatcGccttgaatccagaaggaact	9	10	0	3	rs143780871		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27361199	A	A	27361199	1	1	116	0	1	0	0	0	0	0	0	0	2196	1102	38	4		4	C2orf53	2	27361199	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	196526	27361199	215838174	285	109281											
TCF23	150921	broad.mit.edu	37	chr2	27373132	27373132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacgtgctggtgctcgccGccagctacatagcccacctc	11	16	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27373132	T	T	27373132	3	4	116	1	0	0	0	0	1	0	0	0	15814	1087	38	3	370	3	TCF23	2	27373132	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	11933	27373132	215826241	286	109282											
CAD	790	broad.mit.edu	37	chr2	27457406	27457406	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgaccagctgaaagttatTgaatgcaacgtacgtgtctc	10	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27457406	A	A	27457406	2	1	116	1	0	0	0	0	0	0	0	1	2591	1800	63	5		5	CAD	2	27457406	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	84274	27457406	215741967	287	109283											
GPN1	11321	broad.mit.edu	37	chr2	27861952	27861952	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagataatctgttaaccCataggattggctttgaacct	7	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27861952	T	T	27861952	1	4	116	0	1	0	0	0	0	0	0	0	6682	609	21	4		4	GPN1	2	27861952	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	404546	27861952	215337421	288	109284											
FAM179A	165186	broad.mit.edu	37	chr2	29234250	29234250	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgccccatcctggagccacCctgggctcccccagcagtgt	10	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29234250	G	G	29234250	1	3	116	0	1	0	0	0	0	0	0	0	5550	638	22	4		4	FAM179A	2	29234250	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1372298	29234250	213965123	289	109285											
BIRC6	57448	broad.mit.edu	37	chr2	32602748	32602748	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtagggtgtaggaaggacCttaatggaatcttgttgtta	13	4	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32602748	T	T	32602748	3	4	116	1	0	0	0	0	1	0	0	0	1444	681	24	4	424	4	BIRC6	2	32602748	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3368498	32602748	210596625	290	109286											
HEATR5B	54497	broad.mit.edu	37	chr2	37247992	37247992	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtcatctaaaaataaaaAtagaatgcaaaaatgaaaac	6	4	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37247992	G	G	37247992	1	3	116	0	1	0	0	0	0	0	0	0	7099	116	4	5		5	HEATR5B	2	37247992	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	4645244	37247992	205951381	291	109287											
DHX57	90957	broad.mit.edu	37	chr2	39075411	39075411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgatgcattttattcacCtggtatagtaataacggggc	9	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39075411	A	A	39075411	3	1	116	1	0	0	0	0	1	0	0	0	4553	695	24	2	2056	2	DHX57	2	39075411	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1827419	39075411	204123962	292	109288											
SOS1	6654	broad.mit.edu	37	chr2	39222459	39222459	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagaggtgtgggatgccTcatggtacctggtcttgggt	16	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39222459	C	C	39222459	3	2	116	1	0	0	0	0	1	0	0	0	15050	1550	54	5	866	5	SOS1	2	39222459	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	147048	39222459	203976914	293	109289											
SLC8A1	6546	broad.mit.edu	37	chr2	40657534	40657534	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaattacttatttttattaCtcttaccaaaatttgtttat	1	6	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40657534	A	A	40657534	1	1	116	0	1	0	0	0	0	0	0	0	14820	580	20	3		3	SLC8A1	2	40657534	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	1435075	40657534	202541839	294	109290											
PREPL	9581	broad.mit.edu	37	chr2	44571725	44571725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaaccaccatgtttaaCctgacaaaagaaacatgcag	5	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44571725	A	A	44571725	3	1	116	1	0	0	0	0	1	0	0	0	12581	521	18	3	1888	3	PREPL	2	44571725	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3914191	44571725	198627648	295	109291											
PRKCE	5581	broad.mit.edu	37	chr2	46203900	46203900	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtttggtacatagggGgaaatacatggaaagaagcg	15	3	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46203900	C	C	46203900	1	2	116	0	1	0	0	0	0	0	0	0	12617	1247	43	4		4	PRKCE	2	46203900	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1632175	46203900	196995473	296	109292											
KLRAQ1	129285	broad.mit.edu	37	chr2	48722704	48722704	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaagaaaatagtctgctttGacatacatctgaatttattg	6	5	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48722704	T	T	48722704	1	4	116	0	1	0	0	0	0	0	0	0	8484	1305	45	3		3	KLRAQ1	2	48722704	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2518804	48722704	194476669	297	109293											
FSHR	2492	broad.mit.edu	37	chr2	49189949	49189950	+	Missense_Mutation	DNP	GG	TT	TT													tctgggagctgaagagcagtGgccattccttggatgggtgt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	49189950	TT	TT	49189949	3	4	116	1	0	0	0	0	1	0	0	0	6133	1348	47	2	80	2	FSHR	2	49189949	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	467245	49189949	194009424	298	109294											
FSHR	2492	broad.mit.edu	37	chr2	49190729	49190729	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcagcaggtagattccaaTgcagagatcagcaaaggcca	12	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49190729	C	C	49190729	3	2	116	1	0	0	0	0	1	0	0	0	6133	1464	51	5	860	5	FSHR	2	49190729	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	780	49190729	194008644	299	109295											
NRXN1	9378	broad.mit.edu	37	chr2	51255054	51255054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttgcggaactggcggcGgatgcgcacgctgtgccagg	19	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51255054	T	T	51255054	3	4	116	1	0	0	0	0	1	0	0	0	10760	1116	39	1	4640	1	NRXN1	2	51255054	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2064325	51255054	191944319	300	109296											
SPTBN1	6711	broad.mit.edu	37	chr2	54826187	54826187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtgcctgctcctgccaGttctgtggtcaatggtaaaa	11	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54826187	T	T	54826187	1	4	116	0	1	0	0	0	0	0	0	0	15237	1044	36	3		3	SPTBN1	2	54826187	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3571133	54826187	188373186	301	109297											
PNPT1	87178	broad.mit.edu	37	chr2	55894185	55894185	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggttttaaacatatctacctCacaacttacattcctaagtg	4	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55894185	A	A	55894185	4	1	116	1	0	0	0	0	0	1	0	0	12268	835	29	3	1298	3	PNPT1	2	55894185	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1067998	55894185	187305188	302	109298											
BCL11A	53335	broad.mit.edu	37	chr2	60689032	60689032	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttgcagtaacctttgcaTagggctgggccggcctgggg	17	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60689032	A	A	60689032	3	1	116	1	0	0	0	0	1	0	0	0	1368	1406	49	5	1602	5	BCL11A	2	60689032	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	4794847	60689032	182510341	303	109299											
PLEK	5341	broad.mit.edu	37	chr2	68613865	68613865	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgtaagggaggctgccctGagcagattctagattgattt	12	8	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68613865	T	T	68613865	1	4	116	0	1	0	0	0	0	0	0	0	12148	1305	45	3		3	PLEK	2	68613865	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	7924833	68613865	174585508	304	109300											
ARHGAP25	9938	broad.mit.edu	37	chr2	69034414	69034414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctcctcagcagtgtttgGccagcgcttggatgagactg	12	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69034414	T	T	69034414	3	4	116	1	0	0	0	0	1	0	0	0	876	1203	42	3	534	3	ARHGAP25	2	69034414	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	420549	69034414	174164959	305	109301											
CD207	50489	broad.mit.edu	37	chr2	71058869	71058870	+	Missense_Mutation	DNP	CC	AA	AA													gttgaatggcgtgtcatccaCccaggaccagtccccttcca							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	71058870	AA	AA	71058869	3	1	116	1	0	0	0	0	1	0	0	0	3013	507	18	3	195	3	CD207	2	71058869	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	2024455	71058869	172140504	306	109302											
TEX261	113419	broad.mit.edu	37	chr2	71219180	71219180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcctggactcaccaaccCccagcccgctctgggcagca	9	19	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71219180	A	A	71219180	1	1	116	0	1	0	0	0	0	0	0	0	15904	638	22	2		2	TEX261	2	71219180	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	160311	71219180	171980193	307	109303											
TEX261	113419	broad.mit.edu	37	chr2	71220883	71220883	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtattcttctatcagttcTgccaggtaatagagtccagc	9	9	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71220883	G	G	71220883	2	3	116	1	0	0	0	0	0	0	0	1	15904	1567	55	5		5	TEX261	2	71220883	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	1703	71220883	171978490	308	109304											
CCT7	10574	broad.mit.edu	37	chr2	73478400	73478400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccattgagatggaactctCcaagtacctgcgggattact	11	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73478400	A	A	73478400	3	1	116	1	0	0	0	0	1	0	0	0	2989	855	30	3	1292	3	CCT7	2	73478400	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2257517	73478400	169720973	309	109305											
EGR4	1961	broad.mit.edu	37	chr2	73520449	73520449	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgctaaggtggagcatggcGcggcgccggctgtggggcgc	20	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73520449	A	A	73520449	2	1	116	1	0	0	0	0	0	0	0	1	5014	1074	38	4		4	EGR4	2	73520449	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	42049	73520449	169678924	310	109306											
REG1B	5968	broad.mit.edu	37	chr2	79312369	79312369	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaacttgcaaacaaaggaGaacttcttctcacaagattc	6	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79312369	T	T	79312369	3	4	116	1	0	0	0	0	1	0	0	0	13319	933	33	3	30	3	REG1B	2	79312369	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	5791920	79312369	163887004	311	109307											
REG1B	5968	broad.mit.edu	37	chr2	79312429	79312429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatggtacaatgagaagtGtcagacatagaggatcagaa	11	6	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79312429	T	T	79312429	1	4	116	0	1	0	0	0	0	0	0	0	13319	1392	48	3		3	REG1B	2	79312429	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	60	79312429	163886944	312	109308											
REG1B	5968	broad.mit.edu	37	chr2	79314057	79314057	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtctgggactcctggcCtggggaaaaaaaaaaggaga	13	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79314057	A	A	79314057	5	1	116	1	0	0	0	0	0	0	1	0	13319	695	24	2	452	2	REG1B	2	79314057	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	1628	79314057	163885316	313	109309											
REG3A	5068	broad.mit.edu	37	chr2	79384787	79384787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaattcatcacatcactgCtactccactcccaaccttct	2	16	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384787	A	A	79384787	3	1	116	1	0	0	0	0	1	0	0	0	13320	797	28	3	164	3	REG3A	2	79384787	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	70730	79384787	163814586	314	109310											
REG3A	5068	broad.mit.edu	37	chr2	79386540	79386540	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggcagcatagtgtctgCgacttgaggaggcaatcagg	17	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79386540	A	A	79386540	1	1	116	0	1	0	0	0	0	0	0	0	13320	783	27	3		3	REG3A	2	79386540	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	1753	79386540	163812833	315	109311											
LRRTM1	347730	broad.mit.edu	37	chr2	80530092	80530092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggttggagtccagctgcaGggactgcaggtgcggcacgg	19	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80530092	T	T	80530092	3	4	116	1	0	0	0	0	1	0	0	0	9126	991	35	2	719	2	LRRTM1	2	80530092	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1143552	80530092	162669281	316	109312											
USP39	10713	broad.mit.edu	37	chr2	85836453	85836453	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctagactcacatgtggagcaGacgcttcccattgggggtcc	12	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85836453	C	C	85836453	1	2	116	0	1	0	0	0	0	0	0	0	17197	957	33	4		4	USP39	2	85836453	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5306361	85836453	157362920	317	109313											
SFTPB	6439	broad.mit.edu	37	chr2	85894569	85894569	+	Intron	DEL	C	-	-													tctatgtcatcctatcctatCccttcccctcccatccatcc					rs3024797		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85894569	-	-	85894569	6	5	116	0	1	1	0	1	0	0	0	0	14304	870	30	0		0	SFTPB	2	85894569	Intron	DEL	C	TCGA-44-3918-01A-01D-1105-08	58116	85894569	157304804	318	109314											
RMND5A	64795	broad.mit.edu	37	chr2	87398409	87398409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgtttgttttaacaaaGctttaagatgcttcttataa	5	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87398409	T	T	87398409	1	4	116	0	1	0	0	0	0	0	0	0	13508	986	34	3		3	RMND5A	2	87398409	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1503840	87398409	155800964	319	109315											
GPAT2	150763	broad.mit.edu	37	chr2	96689826	96689826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccaaagaccgggcaaggCcacacctactacccaggagg	11	14	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96689826	A	A	96689826	1	1	116	0	1	0	0	0	0	0	0	0	6654	754	26	3		3	GPAT2	2	96689826	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	9291417	96689826	146509547	320	109316											
SEMA4C	54910	broad.mit.edu	37	chr2	97529542	97529542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgtctcctggggggtgCagaggagaaggtgtaaatga	17	7	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97529542	A	A	97529542	1	1	116	0	1	0	0	0	0	0	0	0	14146	725	25	3		3	SEMA4C	2	97529542	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	839716	97529542	145669831	321	109317											
FAHD2B	151313	broad.mit.edu	37	chr2	97749976	97749976	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgctgctctggacgacttCcccattcactcggcagcaga	10	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97749976	A	A	97749976	4	1	116	1	0	0	0	0	0	1	0	0	5420	864	30	3	232	3	FAHD2B	2	97749976	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	220434	97749976	145449397	322	109318											
MGAT4A	11320	broad.mit.edu	37	chr2	99252887	99252887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgagtcctgcaaatcatgaGaattttctttccccttaaaa	5	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99252887	C	C	99252887	1	2	116	0	1	0	0	0	0	0	0	0	9638	957	33	4		4	MGAT4A	2	99252887	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1502911	99252887	143946486	323	109319											
C2orf55	343990	broad.mit.edu	37	chr2	99413735	99413735	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccatgcagcacatgtggtCcttacagggtcctcgcccca	10	16	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99413735	A	A	99413735	1	1	116	0	1	0	0	0	0	0	0	0	2198	870	30	3		3	C2orf55	2	99413735	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	160848	99413735	143785638	324	109320											
IL1RL1	9173	broad.mit.edu	37	chr2	102954739	102954739	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacagaatggggttttggatCttagcaattctcacaattct	8	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102954739	G	G	102954739	3	3	116	1	0	0	0	0	1	0	0	0	7733	903	32	4	17	4	IL1RL1	2	102954739	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3541004	102954739	140244634	325	109321											
IL18R1	8809	broad.mit.edu	37	chr2	103010927	103010927	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagccaatcttacctcctAgatggaaaaacatatgatgc	7	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103010927	G	G	103010927	5	3	116	1	0	0	0	0	0	0	1	0	7717	434	15	5	1144	5	IL18R1	2	103010927	Splice_Site	SNP	A	TCGA-44-3918-01A-01D-1105-08	56188	103010927	140188446	326	109322											
ST6GAL2	84620	broad.mit.edu	37	chr2	107459730	107459730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcccgcggaagcgcaccCcgtgcttgttggcggtcagg	15	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107459730	A	A	107459730	3	1	116	1	0	0	0	0	1	0	0	0	15340	623	22	2	992	2	ST6GAL2	2	107459730	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4448803	107459730	135739643	327	109323											
RGPD4	285190	broad.mit.edu	37	chr2	108487578	108487579	+	Missense_Mutation	DNP	CC	AG	AG													gcgatgacatccattttgaaCcagtagttcaaatgcctgaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	108487579	AG	AG	108487578	3	1	116	1	0	0	0	0	1	0	0	0	13396	507	18	3	3196	3	RGPD4	2	108487578	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	1027848	108487578	134711795	328	109324											
RANBP2	5903	broad.mit.edu	37	chr2	109393758	109393758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgaaaaactagttttttGttgcagtatataactaagtt	6	4	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109393758	T	T	109393758	1	4	116	0	1	0	0	0	0	0	0	0	13136	1392	48	3		3	RANBP2	2	109393758	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	906180	109393758	133805615	329	109325											
ANKRD57	65124	broad.mit.edu	37	chr2	110373178	110373178	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacgccgatgtggacatcaGggactacagtgggaaaaagg	15	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110373178	T	T	110373178	3	4	116	1	0	0	0	0	1	0	0	0	683	1000	35	2	1114	2	ANKRD57	2	110373178	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	979420	110373178	132826195	330	109326											
ANAPC1	64682	broad.mit.edu	37	chr2	112542754	112542754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatccctaaaaagtgatacCcagatcatttaaatgagcat	6	8	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112542754	A	A	112542754	1	1	116	0	1	0	0	0	0	0	0	0	598	638	22	2		2	ANAPC1	2	112542754	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2169576	112542754	130656619	331	109327											
TMEM87B	84910	broad.mit.edu	37	chr2	112849310	112849310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctaaccatttagctgttGttcttgatgacattatttta	6	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112849310	T	T	112849310	3	4	116	1	0	0	0	0	1	0	0	0	16334	1377	48	3	1096	3	TMEM87B	2	112849310	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	306556	112849310	130350063	332	109328											
TTL	150465	broad.mit.edu	37	chr2	113277759	113277759	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaagctgataagctgatAtttgtattcatctcatataa	5	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113277759	G	G	113277759	1	3	116	0	1	0	0	0	0	0	0	0	16847	464	16	5		5	TTL	2	113277759	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	428449	113277759	129921614	333	109329											
DPP10	57628	broad.mit.edu	37	chr2	116101362	116101362	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaacaagcataagataGgcatctaacctagaatttcc	5	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116101362	C	C	116101362	1	2	116	0	1	0	0	0	0	0	0	0	4767	1015	35	4		4	DPP10	2	116101362	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2823603	116101362	127098011	334	109330											
DPP10	57628	broad.mit.edu	37	chr2	116526064	116526064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggcattctaaacctctAgttcatggtggtgaaaccca	9	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116526064	T	T	116526064	1	4	116	0	1	0	0	0	0	0	0	0	4767	435	15	5		5	DPP10	2	116526064	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	424702	116526064	126673309	335	109331											
DDX18	8886	broad.mit.edu	37	chr2	118572260	118572260	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgcgtttcctgttggccgaGctgcgcacgtgcggccggaa	15	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118572260	C	C	118572260	1	2	116	0	1	0	0	0	0	0	0	0	4378	986	34	4		4	DDX18	2	118572260	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	2046196	118572260	124627113	336	109332											
CCDC93	54520	broad.mit.edu	37	chr2	118688558	118688558	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttttttagtggctacttttGaggtgaacatatatctcacg	9	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118688558	T	T	118688558	1	4	116	0	1	0	0	0	0	0	0	0	2900	1305	45	3		3	CCDC93	2	118688558	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	116298	118688558	124510815	337	109333											
MARCO	8685	broad.mit.edu	37	chr2	119699919	119699919	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaggacgagctcttgagtGagacccaacaagctgctttt	12	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119699919	T	T	119699919	4	4	116	1	0	0	0	0	0	1	0	0	9403	1291	45	3	45	3	MARCO	2	119699919	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1011361	119699919	123499454	338	109334											
MARCO	8685	broad.mit.edu	37	chr2	119739336	119739336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttcattgtagtattcaCccagaacacctggggttttt	8	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119739336	A	A	119739336	1	1	116	0	1	0	0	0	0	0	0	0	9403	522	18	3		3	MARCO	2	119739336	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	39417	119739336	123460037	339	109335											
EPB41L5	57669	broad.mit.edu	37	chr2	120835996	120835996	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caattcaatacaaaaataaaAtttaaaagttgtgtcaatgt	4	4	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120835996	T	T	120835996	1	4	116	0	1	0	0	0	0	0	0	0	5199	116	4	5		5	EPB41L5	2	120835996	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1096660	120835996	122363377	340	109336											
CNTNAP5	129684	broad.mit.edu	37	chr2	125367452	125367452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctacatcgactcagatGgcagcggcccactgggacct	10	14	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125367452	T	T	125367452	3	4	116	1	0	0	0	0	1	0	0	0	3682	1348	47	2	1874	2	CNTNAP5	2	125367452	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4531456	125367452	117831921	341	109337											
POTEF	728378	broad.mit.edu	37	chr2	130832810	130832810	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctttctgatgcatgccCcccatcatgccctgctgcct	7	17	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130832810	A	A	130832810	2	1	116	1	0	0	0	0	0	0	0	1	12361	610	22	2		2	POTEF	2	130832810	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	5465358	130832810	112366563	342	109338											
FAM128B	80097	broad.mit.edu	37	chr2	130948287	130948287	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaacctttctgagatgcaGagggtccaggtcagatgttg	12	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130948287	T	T	130948287	1	4	116	0	1	0	0	0	0	0	0	0	5481	957	33	3		3	FAM128B	2	130948287	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	115477	130948287	112251086	343	109339											
ARHGEF4	50649	broad.mit.edu	37	chr2	131704285	131704285	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagctagtgctgttggcaGctgtatccacttgcctggta	12	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131704285	C	C	131704285	1	2	116	0	1	0	0	0	0	0	0	0	910	986	34	4		4	ARHGEF4	2	131704285	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	755998	131704285	111495088	344	109340											
PLEKHB2	55041	broad.mit.edu	37	chr2	131948926	131948926	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacactttacctgtccttagGagtcaaaaaacttgctgatg	7	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131948926	T	T	131948926	1	4	116	0	1	0	0	0	0	0	0	0	12160	1189	41	3		3	PLEKHB2	2	131948926	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	244641	131948926	111250447	345	109341											
PLEKHB2	55041	broad.mit.edu	37	chr2	131960364	131960364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgtacgtgatgggtgGgctgtggatggcagtcatgg	19	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131960364	T	T	131960364	1	4	116	0	1	0	0	0	0	0	0	0	12160	1247	43	2		2	PLEKHB2	2	131960364	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	11438	131960364	111239009	346	109342											
PLEKHB2	55041	broad.mit.edu	37	chr2	131960429	131960430	+	Intron	DNP	GG	TT	TT													aatggttgaagagggtgagcGgatgttggccaggatggcat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	131960430	TT	TT	131960429	1	4	116	0	1	0	0	0	0	0	0	0	12160	1131	39	1		1	PLEKHB2	2	131960429	Intron	DNP	GG	TCGA-44-3918-01A-01D-1105-08	65	131960429	111238944	347	109343											
LCT	3938	broad.mit.edu	37	chr2	136555732	136555732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggtagggtgggggagacaGcccaggcgttacaggtgggc	21	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136555732	T	T	136555732	1	4	116	0	1	0	0	0	0	0	0	0	8765	986	34	3		3	LCT	2	136555732	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4595303	136555732	106643641	348	109344											
LCT	3938	broad.mit.edu	37	chr2	136565894	136565894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagataaagaattatggaGttgggacctaagagagagat	12	3	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136565894	T	T	136565894	1	4	116	0	1	0	0	0	0	0	0	0	8765	1044	36	3		3	LCT	2	136565894	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	10162	136565894	106633479	349	109345											
LRP1B	53353	broad.mit.edu	37	chr2	141004668	141004668	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttacttgtgctgatatgAtcagacttgctgctctttgg	9	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141004668	T	T	141004668	3	4	116	1	0	0	0	0	1	0	0	0	9042	330	12	5	508	5	LRP1B	2	141004668	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	4438774	141004668	102194705	350	109346											
LRP1B	53353	broad.mit.edu	37	chr2	141092139	141092139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatcatcctgaagagagCgggtcagagaggttagcctg	14	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141092139	A	A	141092139	1	1	116	0	1	0	0	0	0	0	0	0	9042	783	27	3		3	LRP1B	2	141092139	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	87471	141092139	102107234	351	109347											
LRP1B	53353	broad.mit.edu	37	chr2	141110678	141110678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaatagcatcatcataccCtcaattcagactcctattct	2	13	5	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141110678	A	A	141110678	1	1	116	0	1	0	0	0	0	0	0	0	9042	696	24	2		2	LRP1B	2	141110678	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	18539	141110678	102088695	352	109348											
LRP1B	53353	broad.mit.edu	37	chr2	141128181	141128181	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtaaagagaattatttaaaGattctatcctctgcctctag	6	7	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141128181	T	T	141128181	1	4	116	0	1	0	0	0	0	0	0	0	9042	957	33	3		3	LRP1B	2	141128181	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	17503	141128181	102071192	353	109349											
LRP1B	53353	broad.mit.edu	37	chr2	141135813	141135813	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accttgaagaaacacagtccCcattggcacagaggaaatct	8	11	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141135813	G	G	141135813	3	3	116	1	0	0	0	0	1	0	0	0	9042	623	22	4	3321	4	LRP1B	2	141135813	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	7632	141135813	102063560	354	109350											
LRP1B	53353	broad.mit.edu	37	chr2	141143663	141143663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgccatgccaaatccatGgcatataatgtttccttaat	5	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141143663	A	A	141143663	1	1	116	0	1	0	0	0	0	0	0	0	9042	1363	47	4		4	LRP1B	2	141143663	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	7850	141143663	102055710	355	109351											
LRP1B	53353	broad.mit.edu	37	chr2	141283458	141283458	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctccacagtcattagaccCgtcgcatatccaggttggca	9	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141283458	T	T	141283458	3	4	116	1	0	0	0	0	1	0	0	0	9042	652	23	4	5990	4	LRP1B	2	141283458	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	139795	141283458	101915915	356	109352											
LRP1B	53353	broad.mit.edu	37	chr2	141441363	141441363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggtcagctgtagcaaagCcagcctccgggctaggggat	15	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141441363	A	A	141441363	1	1	116	0	1	0	0	0	0	0	0	0	9042	754	26	3		3	LRP1B	2	141441363	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	157905	141441363	101758010	357	109353											
LRP1B	53353	broad.mit.edu	37	chr2	141458260	141458260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgaaacaaaattctcCataaagaaatattaaaactt	3	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141458260	A	A	141458260	1	1	116	0	1	0	0	0	0	0	0	0	9042	609	21	2		2	LRP1B	2	141458260	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	16897	141458260	101741113	358	109354											
LRP1B	53353	broad.mit.edu	37	chr2	141459545	141459545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtctgtgacattgaaatGcttcagcttggaatagcaag	10	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141459545	T	T	141459545	1	4	116	0	1	0	0	0	0	0	0	0	9042	1334	46	3		3	LRP1B	2	141459545	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1285	141459545	101739828	359	109355											
LRP1B	53353	broad.mit.edu	37	chr2	142004857	142004857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccttccacacaactgcaaGtgtaggatccatgtgtgttt	9	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142004857	T	T	142004857	3	4	116	1	0	0	0	0	1	0	0	0	9042	1029	36	3	13617	3	LRP1B	2	142004857	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	545312	142004857	101194516	360	109356											
ZEB2	9839	broad.mit.edu	37	chr2	145156600	145156600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttgtgggagggttactGttgggagctaacggcttgga	16	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145156600	T	T	145156600	3	4	116	1	0	0	0	0	1	0	0	0	17750	1368	48	3	1502	3	ZEB2	2	145156600	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3151743	145156600	98042773	361	109357											
ZEB2	9839	broad.mit.edu	37	chr2	145157187	145157187	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtatagtcaataatactttTagtggcaccattatgactca	6	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145157187	C	C	145157187	3	2	116	1	0	0	0	0	1	0	0	0	17750	1763	61	5	2089	5	ZEB2	2	145157187	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	587	145157187	98042186	362	109358											
ZEB2	9839	broad.mit.edu	37	chr2	145187523	145187523	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggttggcaataccgtcatcCtcagcaatatgaagcttgtc	10	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145187523	G	G	145187523	3	3	116	1	0	0	0	0	1	0	0	0	17750	680	24	4	3532	4	ZEB2	2	145187523	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	30336	145187523	98011850	363	109359											
ACVR2A	92	broad.mit.edu	37	chr2	148683668	148683668	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccatctcttgaagacatgCaggaagttgttgtgcataaa	9	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148683668	T	T	148683668	4	4	116	1	0	0	0	0	0	1	0	0	223	711	25	4	1323	4	ACVR2A	2	148683668	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3496145	148683668	94515705	364	109360											
MBD5	55777	broad.mit.edu	37	chr2	149227675	149227675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtagcaatagtaccccGggttgtggggcctcaaatac	12	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149227675	T	T	149227675	2	4	116	1	0	0	0	0	0	0	0	1	9440	1103	39	1		1	MBD5	2	149227675	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	544007	149227675	93971698	365	109361											
LY75	4065	broad.mit.edu	37	chr2	160692035	160692035	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggttgattgtcattgcaaTcaactgttttccagaatcca	7	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160692035	G	G	160692035	3	3	116	1	0	0	0	0	1	0	0	0	9187	1435	50	5	1579	5	LY75	2	160692035	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	11464360	160692035	82507338	366	109362											
LY75	4065	broad.mit.edu	37	chr2	160697206	160697206	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaaaatgtcgctttccatCacccagtcctggcagttggg	9	11	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160697206	T	T	160697206	1	4	116	0	1	0	0	0	0	0	0	0	9187	841	29	4		4	LY75	2	160697206	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5171	160697206	82502167	367	109363											
SCN1A	6323	broad.mit.edu	37	chr2	166892752	166892752	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accacttgtagttccatttaCatctttaagatagtcaagat	5	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166892752	G	G	166892752	3	3	116	1	0	0	0	0	1	0	0	0	14027	478	17	4	2838	4	SCN1A	2	166892752	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	6195546	166892752	76306621	368	109364											
XIRP2	129446	broad.mit.edu	37	chr2	168100897	168100897	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagatccccttggaaaatatCatcaagtaaagacagtccag	7	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168100897	T	T	168100897	3	4	116	1	0	0	0	0	1	0	0	0	17557	826	29	4	3025	4	XIRP2	2	168100897	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1208145	168100897	75098476	369	109365											
LRP2	4036	broad.mit.edu	37	chr2	170131704	170131704	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaccttcaaataagcttactCcaaagggatgaggaatgagg	11	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170131704	G	G	170131704	3	3	116	1	0	0	0	0	1	0	0	0	9043	855	30	4	12414	4	LRP2	2	170131704	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2030807	170131704	73067669	370	109366											
PHOSPHO2	493911	broad.mit.edu	37	chr2	170558020	170558020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtttatattggtgatgGtggaaatgatgtctgtccag	12	3	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170558020	T	T	170558020	3	4	116	1	0	0	0	0	1	0	0	0	11952	1261	44	3	541	3	PHOSPHO2	2	170558020	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	426316	170558020	72641353	371	109367											
DLX2	1746	broad.mit.edu	37	chr2	172965595	172965595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagcgctggccccaggGtgctgctccgaggggatctc	17	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172965595	T	T	172965595	3	4	116	1	0	0	0	0	1	0	0	0	4611	1252	44	3	327	3	DLX2	2	172965595	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2407575	172965595	70233778	372	109368											
ITGA6	3655	broad.mit.edu	37	chr2	173344280	173344280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtttttaagctgtgctgGgcagctaaggatgctctcta	12	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173344280	T	T	173344280	1	4	116	0	1	0	0	0	0	0	0	0	7950	1247	43	2		2	ITGA6	2	173344280	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	378685	173344280	69855093	373	109369											
ITGA6	3655	broad.mit.edu	37	chr2	173349786	173349786	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaatcaatacaaaatcattGttttggaattccccaatagc	4	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173349786	A	A	173349786	1	1	116	0	1	0	0	0	0	0	0	0	7950	1392	48	4		4	ITGA6	2	173349786	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5506	173349786	69849587	374	109370											
TTN	7273	broad.mit.edu	37	chr2	179418213	179418213	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattaaaaaacataatcaaAccagtaggtacataccaagt	4	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179418213	T	T	179418213	1	4	116	0	1	0	0	0	0	0	0	0	16861	58	2	5		5	TTN	2	179418213	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	6068427	179418213	63781160	375	109371											
TTN	7273	broad.mit.edu	37	chr2	179440902	179440902	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccccaacacctgcatcgttGatggcactgattctgaagtt	8	12	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179440902	A	A	179440902	2	1	116	1	0	0	0	0	0	0	0	1	16861	1280	45	4		4	TTN	2	179440902	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	22689	179440902	63758471	376	109372											
TTN	7273	broad.mit.edu	37	chr2	179440974	179440974	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaactgagtgattctgagGgcggttcctgtggtatcttt	13	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179440974	A	A	179440974	2	1	116	1	0	0	0	0	0	0	0	1	16861	1219	43	4		4	TTN	2	179440974	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	72	179440974	63758399	377	109373											
TTN	7273	broad.mit.edu	37	chr2	179567309	179567309	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttacaatggcatcatcaaagGacacttcacactcaaaggtg	7	10	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179567309	A	A	179567309	3	1	116	1	0	0	0	0	1	0	0	0	16861	1174	41	4	74248	4	TTN	2	179567309	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	126335	179567309	63632064	378	109374											
TTN	7273	broad.mit.edu	37	chr2	179588867	179588867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaagagggaggaactgctCggtctgtgtgaggaaaggta	17	4	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179588867	A	A	179588867	3	1	116	1	0	0	0	0	1	0	0	0	16861	884	31	3	83570	3	TTN	2	179588867	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	21558	179588867	63610506	379	109375											
TTN	7273	broad.mit.edu	37	chr2	179613916	179613916	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtacattttccttttctgatCtaccaagttttccaaaatta	3	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179613916	A	A	179613916	3	1	116	1	0	0	0	0	1	0	0	0	16861	913	32	3	97086	3	TTN	2	179613916	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	25049	179613916	63585457	380	109376											
TTN	7273	broad.mit.edu	37	chr2	179615786	179615786	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcagattctatattttgatCcatttgattagaaagggcat	7	6	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179615786	G	G	179615786	3	3	116	1	0	0	0	0	1	0	0	0	16861	855	30	4	98956	4	TTN	2	179615786	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1870	179615786	63583587	381	109377											
CCDC141	285025	broad.mit.edu	37	chr2	179702053	179702053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctctggaggttagtgggGgctcagctttgaactggagg	16	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179702053	T	T	179702053	3	4	116	1	0	0	0	0	1	0	0	0	2801	1232	43	2	463	2	CCDC141	2	179702053	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	86267	179702053	63497320	382	109378											
CCDC141	285025	broad.mit.edu	37	chr2	179702335	179702335	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagacacactcatattctTcccctgagagcatgtcttca	7	12	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179702335	A	A	179702335	3	1	116	1	0	0	0	0	1	0	0	0	2801	1783	62	5	745	5	CCDC141	2	179702335	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	282	179702335	63497038	383	109379											
SESTD1	91404	broad.mit.edu	37	chr2	179989108	179989108	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacatcttgggcaacaccatGaaattcaagagctgcttgta	8	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179989108	T	T	179989108	3	4	116	1	0	0	0	0	1	0	0	0	14240	1290	45	3	972	3	SESTD1	2	179989108	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	286773	179989108	63210265	384	109380											
ITGA4	3676	broad.mit.edu	37	chr2	182346387	182346388	+	Missense_Mutation	DNP	CC	AA	AA													ccgaagtagtcggaggagctCctcaacatgagcagattggt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	182346388	AA	AA	182346387	3	1	116	1	0	0	0	0	1	0	0	0	7948	855	30	3	843	3	ITGA4	2	182346387	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	2357279	182346387	60852986	385	109381											
NCKAP1	10787	broad.mit.edu	37	chr2	183832073	183832073	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaggccaagtgaagcctttGagacactagtatatgcctat	9	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183832073	C	C	183832073	4	2	116	1	0	0	0	0	0	1	0	0	10316	1294	45	4	1951	4	NCKAP1	2	183832073	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1485686	183832073	59367300	386	109382											
NCKAP1	10787	broad.mit.edu	37	chr2	183888673	183888673	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacagtaataaaaaaaagtGaaatgcacccttcttctaaa	4	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183888673	A	A	183888673	1	1	116	0	1	0	0	0	0	0	0	0	10316	1305	45	4		4	NCKAP1	2	183888673	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	56600	183888673	59310700	387	109383											
ZNF804A	91752	broad.mit.edu	37	chr2	185801843	185801843	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaataaaacaggacactctaGatgaaaaatacaacaaaata	4	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185801843	T	T	185801843	3	4	116	1	0	0	0	0	1	0	0	0	18299	942	33	3	1734	3	ZNF804A	2	185801843	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1913170	185801843	57397530	388	109384											
ZSWIM2	151112	broad.mit.edu	37	chr2	187694605	187694605	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttttggtgtgtaaactTggctgaatgagaataagcag	13	3	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187694605	A	A	187694605	3	1	116	1	0	0	0	0	1	0	0	0	18370	1812	63	5	965	5	ZSWIM2	2	187694605	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	1892762	187694605	55504768	389	109385											
DIRC1	116093	broad.mit.edu	37	chr2	189599394	189599394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagttaagacactttagcCtcacagtattcaattcagac	6	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189599394	T	T	189599394	3	4	116	1	0	0	0	0	1	0	0	0	4573	681	24	4	64	4	DIRC1	2	189599394	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1904789	189599394	53599979	390	109386											
WDR75	84128	broad.mit.edu	37	chr2	190316657	190316657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactatatatggcattgaGtggctctttacattttacag	7	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190316657	T	T	190316657	1	4	116	0	1	0	0	0	0	0	0	0	17452	1044	36	3		3	WDR75	2	190316657	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	717263	190316657	52882716	391	109387											
STAT4	6775	broad.mit.edu	37	chr2	191926404	191926404	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattggccttgatcatccaGagactatagctccacaaaca	6	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191926404	T	T	191926404	1	4	116	0	1	0	0	0	0	0	0	0	15385	957	33	3		3	STAT4	2	191926404	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1609747	191926404	51272969	392	109388											
DNAH7	56171	broad.mit.edu	37	chr2	196661269	196661269	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaattagatccagggaatgCaatctaataagtataaactt	6	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196661269	G	G	196661269	1	3	116	0	1	0	0	0	0	0	0	0	4646	725	25	4		4	DNAH7	2	196661269	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4734865	196661269	46538104	393	109389											
DNAH7	56171	broad.mit.edu	37	chr2	196709748	196709748	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgattatcccattatcaaTggaaaatgagtcagaaggta	8	5	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196709748	C	C	196709748	3	2	116	1	0	0	0	0	1	0	0	0	4646	1464	51	5	3227	5	DNAH7	2	196709748	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	48479	196709748	46489625	394	109390											
DNAH7	56171	broad.mit.edu	37	chr2	196859260	196859261	+	Intron	DNP	CC	AA	AA													aattgggtttagagatattcCcattgtggtcttggttgttt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	196859261	AA	AA	196859260	1	1	116	0	1	0	0	0	0	0	0	0	4646	638	22	2		2	DNAH7	2	196859260	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	149512	196859260	46340113	395	109391											
PLCL1	5334	broad.mit.edu	37	chr2	199011651	199011651	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagcctggaagccatagagGagaaggaaagtagtgaggag	17	5	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	199011651	T	T	199011651	4	4	116	1	0	0	0	0	0	1	0	0	12134	1175	41	3	3275	3	PLCL1	2	199011651	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2152391	199011651	44187722	396	109392											
SATB2	23314	broad.mit.edu	37	chr2	200246529	200246529	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagagggttccaccttcCcagcttgattattcctgcac	11	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200246529	A	A	200246529	4	1	116	1	0	0	0	0	0	1	0	0	13966	632	22	2	1872	2	SATB2	2	200246529	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1234878	200246529	42952844	397	109393											
NRP2	8828	broad.mit.edu	37	chr2	206610595	206610595	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgggatgcggctggaggtGctgggctgtgactggacagg	20	6	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206610595	T	T	206610595	2	4	116	1	0	0	0	0	0	0	0	1	10756	1306	46	3		3	NRP2	2	206610595	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	6364066	206610595	36588778	398	109394											
MDH1B	130752	broad.mit.edu	37	chr2	207622051	207622051	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccagatgataggggaattCttgtgactccacttattctt	8	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207622051	G	G	207622051	3	3	116	1	0	0	0	0	1	0	0	0	9502	912	32	4	1416	4	MDH1B	2	207622051	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1011456	207622051	35577322	399	109395											
SPAG16	79582	broad.mit.edu	37	chr2	215145615	215145615	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttcatcttcctctacttAgtagcacatgtaatctgcga	5	11	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215145615	T	T	215145615	1	4	116	0	1	0	0	0	0	0	0	0	15094	435	15	5		5	SPAG16	2	215145615	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	7523564	215145615	28053758	400	109396											
ABCA12	26154	broad.mit.edu	37	chr2	215866256	215866256	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttagcacaaagagatgcTcaaaccctaatagaacagca	6	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215866256	G	G	215866256	1	3	116	0	1	0	0	0	0	0	0	0	30	1566	54	5		5	ABCA12	2	215866256	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	720641	215866256	27333117	401	109397											
ABCA12	26154	broad.mit.edu	37	chr2	215880350	215880350	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgggagtggtgatattaGtatcacaggaatgcagccag	14	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215880350	C	C	215880350	3	2	116	1	0	0	0	0	1	0	0	0	30	1029	36	4	6123	4	ABCA12	2	215880350	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	14094	215880350	27319023	402	109398											
MARCH4	57574	broad.mit.edu	37	chr2	217124302	217124302	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccttttgatcctccagGtcttttgtcttgtcatagtt	7	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217124302	A	A	217124302	2	1	116	1	0	0	0	0	0	0	0	1	9395	1252	44	4		4	MARCH4	2	217124302	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1243952	217124302	26075071	403	109399											
VIL1	7429	broad.mit.edu	37	chr2	219296838	219296838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggccacttctatgggggcGactgctacctgctgctctac	11	13	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219296838	T	T	219296838	3	4	116	1	0	0	0	0	1	0	0	0	17291	1058	37	3	1315	3	VIL1	2	219296838	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2172536	219296838	23902535	404	109400											
STK36	27148	broad.mit.edu	37	chr2	219553627	219553627	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaggccagaagcctctgaaGacttacagaggttctttttc	9	11	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219553627	T	T	219553627	1	4	116	0	1	0	0	0	0	0	0	0	15420	957	33	3		3	STK36	2	219553627	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	256789	219553627	23645746	405	109401											
IHH	3549	broad.mit.edu	37	chr2	219922303	219922303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcggccctcataatgcagGgactcctctgagtggtggcc	14	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219922303	T	T	219922303	2	4	116	1	0	0	0	0	0	0	0	1	7677	1219	43	2		2	IHH	2	219922303	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	368676	219922303	23277070	406	109402											
TUBA4A	7277	broad.mit.edu	37	chr2	220116417	220116417	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaagagctgtcggtatGggccatttcggatctcatct	14	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220116417	A	A	220116417	3	1	116	1	0	0	0	0	1	0	0	0	16875	1348	47	4	1109	4	TUBA4A	2	220116417	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	194114	220116417	23082956	407	109403											
DNAJB2	3300	broad.mit.edu	37	chr2	220146344	220146344	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgctttcccccgccaagtgtCagagtgtcagtctctggaca	10	13	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220146344	G	G	220146344	1	3	116	0	1	0	0	0	0	0	0	0	4660	841	29	4		4	DNAJB2	2	220146344	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	29927	220146344	23053029	408	109404											
OBSL1	23363	broad.mit.edu	37	chr2	220421267	220421267	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcagcctcgcaaggttaaGatgcggcttgaaccattctg	12	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220421267	T	T	220421267	2	4	116	1	0	0	0	0	0	0	0	1	10908	932	33	3		3	OBSL1	2	220421267	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	274923	220421267	22778106	409	109405											
OBSL1	23363	broad.mit.edu	37	chr2	220424002	220424002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcatcacatacaaactcGcccccgtcctcgggctgagc	8	18	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220424002	T	T	220424002	2	4	116	1	0	0	0	0	0	0	0	1	10908	1074	38	3		3	OBSL1	2	220424002	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	2735	220424002	22775371	410	109406											
PAX3	5077	broad.mit.edu	37	chr2	223160154	223160154	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccacctcccaatagctgaGatcgataattggggtgatta	11	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223160154	T	T	223160154	1	4	116	0	1	0	0	0	0	0	0	0	11574	957	33	3		3	PAX3	2	223160154	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2736152	223160154	20039219	411	109407											
CUL3	8452	broad.mit.edu	37	chr2	225346795	225346795	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctgtctcttgctgaatttCctgaaatttcatcagattaa	5	8	4	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225346795	A	A	225346795	4	1	116	1	0	0	0	0	0	1	0	0	4089	869	30	3	475	3	CUL3	2	225346795	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2186641	225346795	17852578	412	109408											
SPHKAP	80309	broad.mit.edu	37	chr2	228882376	228882376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcagtaaccgattccggGgatagccctgcgcctgccac	10	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228882376	T	T	228882376	3	4	116	1	0	0	0	0	1	0	0	0	15166	1232	43	2	1932	2	SPHKAP	2	228882376	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3535581	228882376	14316997	413	109409											
PID1	55022	broad.mit.edu	37	chr2	229890732	229890732	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacatcctctcgggctagCgtgtgcttcttccagagctc	10	13	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229890732	T	T	229890732	2	4	116	1	0	0	0	0	0	0	0	1	11977	755	27	4		4	PID1	2	229890732	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1008356	229890732	13308641	414	109410											
FBXO36	130888	broad.mit.edu	37	chr2	230861767	230861767	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttaggtgcacaagcagcaGagatgaaatgacattcctcc	9	10	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230861767	T	T	230861767	1	4	116	0	1	0	0	0	0	0	0	0	5802	957	33	3		3	FBXO36	2	230861767	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	971035	230861767	12337606	415	109411											
SP110	3431	broad.mit.edu	37	chr2	231041485	231041485	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaggttattctggaggttTttcttttgtagatactggcc	11	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231041485	A	A	231041485	1	1	116	0	1	0	0	0	0	0	0	0	15075	1856	64	5		5	SP110	2	231041485	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	179718	231041485	12157888	416	109412											
SP110	3431	broad.mit.edu	37	chr2	231065682	231065682	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaagtgccatcaatgatctCtggaaaatgaaagatcttag	9	6	3	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231065682	A	A	231065682	5	1	116	1	0	0	0	0	0	0	1	0	15075	927	32	3	1197	3	SP110	2	231065682	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	24197	231065682	12133691	417	109413											
PDE6D	5147	broad.mit.edu	37	chr2	232603771	232603771	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcaggtgctagtctggcaTtggtcacagccctgtgtaga	13	10	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232603771	C	C	232603771	1	2	116	0	1	0	0	0	0	0	0	0	11742	1508	52	5		5	PDE6D	2	232603771	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	1538089	232603771	10595602	418	109414											
CHRND	1144	broad.mit.edu	37	chr2	233392133	233392133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagttgaggagaccctcaCtaccaatgtgtggatagagc	12	8	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233392133	A	A	233392133	3	1	116	1	0	0	0	0	1	0	0	0	3425	565	20	3	231	3	CHRND	2	233392133	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	788362	233392133	9807240	419	109415											
CHRND	1144	broad.mit.edu	37	chr2	233398732	233398732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctggtgcggaggagcagctCcctgggatacatctccaagg	14	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233398732	T	T	233398732	3	4	116	1	0	0	0	0	1	0	0	0	3425	855	30	4	1177	4	CHRND	2	233398732	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	6599	233398732	9800641	420	109416											
CHRND	1144	broad.mit.edu	37	chr2	233399824	233399824	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccttctcaccccactctctCtgcccctacccacaggagaa	4	21	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233399824	A	A	233399824	1	1	116	0	1	0	0	0	0	0	0	0	3425	928	32	3		3	CHRND	2	233399824	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1092	233399824	9799549	421	109417											
EFHD1	80303	broad.mit.edu	37	chr2	233546153	233546153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggccacacggaaagagtGcttgctggggtcctgccctc	14	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233546153	T	T	233546153	1	4	116	0	1	0	0	0	0	0	0	0	4988	1334	46	3		3	EFHD1	2	233546153	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	146329	233546153	9653220	422	109418											
INPP5D	3635	broad.mit.edu	37	chr2	233995472	233995472	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatgcctctgccgcactcAcaataattgagtggtgagca	9	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233995472	T	T	233995472	1	4	116	0	1	0	0	0	0	0	0	0	7826	174	6	5		5	INPP5D	2	233995472	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	449319	233995472	9203901	423	109419											
USP40	55230	broad.mit.edu	37	chr2	234463045	234463045	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttgctgctttaaccagcCtgtcacaagttccacagtgg	8	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234463045	T	T	234463045	3	4	116	1	0	0	0	0	1	0	0	0	17199	681	24	4	3141	4	USP40	2	234463045	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	467573	234463045	8736328	424	109420											
HJURP	55355	broad.mit.edu	37	chr2	234749700	234749700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctttaatttcatcgtaacGattccttccgtggcctggca	7	11	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234749700	T	T	234749700	3	4	116	1	0	0	0	0	1	0	0	0	7256	1058	37	3	528	3	HJURP	2	234749700	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	286655	234749700	8449673	425	109421											
GBX2	2637	broad.mit.edu	37	chr2	237074654	237074654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatcttagggttccgggagGgctcccctgtcttggaattg	14	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237074654	T	T	237074654	3	4	116	1	0	0	0	0	1	0	0	0	6343	1232	43	2	100	2	GBX2	2	237074654	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2324954	237074654	6124719	426	109422											
ASB18	401036	broad.mit.edu	37	chr2	237123093	237123093	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgaggcctggagagcgcagGatgcggtctggagcacgcgg	20	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237123093	C	C	237123093	3	2	116	1	0	0	0	0	1	0	0	0	1026	1174	41	4	398	4	ASB18	2	237123093	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	48439	237123093	6076280	427	109423											
LRRFIP1	9208	broad.mit.edu	37	chr2	238657973	238657973	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagggaaatcaaggtgagAtgctctcttcttactgacaa	9	8	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238657973	C	C	238657973	1	2	116	0	1	0	0	0	0	0	0	0	9114	348	12	5		5	LRRFIP1	2	238657973	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1534880	238657973	4541400	428	109424											
GPR35	2859	broad.mit.edu	37	chr2	241570038	241570038	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcatggtctgggccaacctCctggtgttcgtggtctgctt	13	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241570038	G	G	241570038	2	3	116	1	0	0	0	0	0	0	0	1	6755	842	30	4		4	GPR35	2	241570038	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	2912065	241570038	1629335	429	109425											
KIF1A	547	broad.mit.edu	37	chr2	241659303	241659303	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcggcctctggcagcagctCgggctctgggctggctggcc	17	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241659303	T	T	241659303	3	4	116	1	0	0	0	0	1	0	0	0	8353	893	31	4	482	4	KIF1A	2	241659303	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	89265	241659303	1540070	430	109426											
ING5	84289	broad.mit.edu	37	chr2	242644014	242644014	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacagaaaacctttggaggtGaatttttgtcttgctgctga	11	6	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242644014	T	T	242644014	1	4	116	0	1	0	0	0	0	0	0	0	7809	1305	45	3		3	ING5	2	242644014	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	984711	242644014	555359	431	109427											
ITPR1	3708	broad.mit.edu	37	chr3	4706742	4706742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtaatccagccacccttgAgcttgcattacttccaaaca	5	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4706742	T	T	4706742	1	4	116	0	1	0	0	0	0	0	0	0	7990	319	11	5		5	ITPR1	3	4706742	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08		4706742	193315688	432	109428											
GRM7	2917	broad.mit.edu	37	chr3	7348424	7348424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgactttttaggggtttGgcatttttaccaaactcatg	9	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7348424	T	T	7348424	1	4	116	0	1	0	0	0	0	0	0	0	6868	1363	47	2		2	GRM7	3	7348424	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2641682	7348424	190674006	433	109429											
IL17RE	132014	broad.mit.edu	37	chr3	9948315	9948315	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaacttgcctgtagtacctCaggttccagaggcagaaaca	10	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9948315	G	G	9948315	1	3	116	0	1	0	0	0	0	0	0	0	7713	841	29	4		4	IL17RE	3	9948315	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2599891	9948315	188074115	434	109430											
TMEM111	55831	broad.mit.edu	37	chr3	10005863	10005863	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccactggtgatccgtcagctCcaaagcttcccactctgtct	7	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10005863	G	G	10005863	3	3	116	1	0	0	0	0	1	0	0	0	16151	864	30	4	113	4	TMEM111	3	10005863	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	57548	10005863	188016567	435	109431											
FANCD2	2177	broad.mit.edu	37	chr3	10140682	10140682	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacccagaagaaacaacgacAcaatcttagaatcactcctg	6	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10140682	G	G	10140682	1	3	116	0	1	0	0	0	0	0	0	0	5722	174	6	5		5	FANCD2	3	10140682	3'UTR	SNP	A	TCGA-44-3918-01A-01D-1105-08	134819	10140682	187881748	436	109432											
SLC6A11	6538	broad.mit.edu	37	chr3	10976660	10976660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcctcagacccctcatGgcctagcagggctgagggcc	14	15	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10976660	T	T	10976660	1	4	116	0	1	0	0	0	0	0	0	0	14788	1363	47	2		2	SLC6A11	3	10976660	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	835978	10976660	187045770	437	109433											
SYN2	6854	broad.mit.edu	37	chr3	12192691	12192691	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttgatgtttcatctgtttCagaagttatctaagataagc	8	5	4	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12192691	G	G	12192691	1	3	116	0	1	0	0	0	0	0	0	0	15560	841	29	4		4	SYN2	3	12192691	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1216031	12192691	185829739	438	109434											
SYN2	6854	broad.mit.edu	37	chr3	12200101	12200101	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagacaaccggtaagaattTgagctcctcccttttcctct	7	12	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12200101	C	C	12200101	1	2	116	0	1	0	0	0	0	0	0	0	15560	1827	63	5		5	SYN2	3	12200101	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	7410	12200101	185822329	439	109435											
CAND2	23066	broad.mit.edu	37	chr3	12857205	12857205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccaagggtctgtgtgcGgtcaccaaaagcctggcaca	11	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12857205	T	T	12857205	1	4	116	0	1	0	0	0	0	0	0	0	2642	1131	39	1		1	CAND2	3	12857205	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	657104	12857205	185165225	440	109436											
GRIP2	80852	broad.mit.edu	37	chr3	14558767	14558767	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaccccagccgaggctctCcaccccaccacacagtgggt	9	18	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14558767	A	A	14558767	1	1	116	0	1	0	0	0	0	0	0	0	6854	870	30	3		3	GRIP2	3	14558767	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1701562	14558767	183463663	441	109437											
COLQ	8292	broad.mit.edu	37	chr3	15493117	15493117	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggagaagctgctgccagttCtgtggggcgcagcccacctt	14	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15493117	A	A	15493117	1	1	116	0	1	0	0	0	0	0	0	0	3745	928	32	3		3	COLQ	3	15493117	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	934350	15493117	182529313	442	109438											
BTD	686	broad.mit.edu	37	chr3	15677002	15677002	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggctgttacgtggttgCcctgggagcccacaccgggg	16	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15677002	T	T	15677002	3	4	116	1	0	0	0	0	1	0	0	0	1560	739	26	4	122	4	BTD	3	15677002	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	183885	15677002	182345428	443	109439											
GALNTL2	117248	broad.mit.edu	37	chr3	16263881	16263881	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acggtaaataacgtaacagaGaaacatgccagaatgtataa	8	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16263881	A	A	16263881	1	1	116	0	1	0	0	0	0	0	0	0	6284	957	33	4		4	GALNTL2	3	16263881	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	586879	16263881	181758549	444	109440											
TBC1D5	9779	broad.mit.edu	37	chr3	17448047	17448047	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaccaaagcatgagaaTccttttgttaaaattcctct	5	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17448047	A	A	17448047	1	1	116	0	1	0	0	0	0	0	0	0	15745	1450	50	5		5	TBC1D5	3	17448047	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	1184166	17448047	180574383	445	109441											
TBC1D5	9779	broad.mit.edu	37	chr3	17747672	17747672	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacatcggcaggcagccgctCgaagggcctcttctccggca	13	15	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17747672	A	A	17747672	1	1	116	0	1	0	0	0	0	0	0	0	15745	899	31	3		3	TBC1D5	3	17747672	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	299625	17747672	180274758	446	109442											
ZNF385D	79750	broad.mit.edu	37	chr3	21467159	21467159	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaacatggttttgtgcttaGtacctgtcaggaatattgaa	9	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21467159	C	C	21467159	3	2	116	1	0	0	0	0	1	0	0	0	18004	1029	36	4	522	4	ZNF385D	3	21467159	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3719487	21467159	176555271	447	109443											
RARB	5915	broad.mit.edu	37	chr3	25542753	25542753	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttattaataaagtcacCaggaatcgatgccaatactg	8	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25542753	T	T	25542753	2	4	116	1	0	0	0	0	0	0	0	1	13161	581	21	4		4	RARB	3	25542753	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	4075594	25542753	172479677	448	109444											
ZCWPW2	152098	broad.mit.edu	37	chr3	28489434	28489434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaaaacaaaaaaacatGtcagcaggccctatggtgtt	8	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28489434	T	T	28489434	1	4	116	0	1	0	0	0	0	0	0	0	17724	1392	48	3		3	ZCWPW2	3	28489434	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2946681	28489434	169532996	449	109445											
GADL1	339896	broad.mit.edu	37	chr3	30842529	30842529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcacatcatagaatttatCctgctggaagaggtaagatg	10	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30842529	A	A	30842529	3	1	116	1	0	0	0	0	1	0	0	0	6245	855	30	3	479	3	GADL1	3	30842529	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2353095	30842529	167179901	450	109446											
GPD1L	23171	broad.mit.edu	37	chr3	32180072	32180072	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggtcttctctgccttttgGttgcaggttgccatgtcaaa	10	10	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32180072	A	A	32180072	1	1	116	0	1	0	0	0	0	0	0	0	6670	1276	44	4		4	GPD1L	3	32180072	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1337543	32180072	165842358	451	109447											
DYNC1LI1	51143	broad.mit.edu	37	chr3	32612316	32612316	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaatgtgcgaggcggctgaGgcggtggcggtggaggcggc	22	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32612316	A	A	32612316	1	1	116	0	1	0	0	0	0	0	0	0	4884	1015	35	4		4	DYNC1LI1	3	32612316	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	432244	32612316	165410114	452	109448											
MLH1	4292	broad.mit.edu	37	chr3	37042530	37042530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccagtatttctacctatGgctttcgaggtgaggtaagc	11	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37042530	T	T	37042530	3	4	116	1	0	0	0	0	1	0	0	0	9710	1348	47	2	302	2	MLH1	3	37042530	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4430214	37042530	160979900	453	109449											
SCN5A	6331	broad.mit.edu	37	chr3	38608022	38608022	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacatcttgtcggcatactCaagcagaaccttgatggtct	9	10	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38608022	G	G	38608022	3	3	116	1	0	0	0	0	1	0	0	0	14035	835	29	4	2364	4	SCN5A	3	38608022	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1565492	38608022	159414408	454	109450											
TTC21A	199223	broad.mit.edu	37	chr3	39162666	39162667	+	Missense_Mutation	DNP	TG	AT	AT													gaaactggacaaggatggcaTggctggtttgacaggtatat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	39162667	AT	AT	39162666	3	1	116	1	0	0	0	0	1	0	0	0	16813	1464	51	5	1137	5	TTC21A	3	39162666	Missense_Mutation	DNP	TG	TCGA-44-3918-01A-01D-1105-08	554644	39162666	158859764	455	109451											
XIRP1	165904	broad.mit.edu	37	chr3	39227262	39227262	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagaggggcagtcttcagGgtggtctctgcagcttggag	16	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39227262	T	T	39227262	2	4	116	1	0	0	0	0	0	0	0	1	17556	1219	43	2		2	XIRP1	3	39227262	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	64596	39227262	158795168	456	109452											
CLEC3B	7123	broad.mit.edu	37	chr3	45077113	45077113	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggactgcatctcgcgcggGggcaccctgggcacccctca	14	16	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45077113	A	A	45077113	2	1	116	1	0	0	0	0	0	0	0	1	3543	1219	43	4		4	CLEC3B	3	45077113	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	5849851	45077113	152945317	457	109453											
CDCP1	64866	broad.mit.edu	37	chr3	45153906	45153906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgagggctgaagctgaacCtccccaaaaggacatgggcc	13	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45153906	A	A	45153906	3	1	116	1	0	0	0	0	1	0	0	0	3123	680	24	2	2222	2	CDCP1	3	45153906	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	76793	45153906	152868524	458	109454											
LARS2	23395	broad.mit.edu	37	chr3	45530212	45530212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcccagtactagctcagagGacaccatcttagcccaaacc	6	15	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45530212	T	T	45530212	3	4	116	1	0	0	0	0	1	0	0	0	8707	1174	41	3	1185	3	LARS2	3	45530212	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	376306	45530212	152492218	459	109455											
PTPN23	25930	broad.mit.edu	37	chr3	47448250	47448250	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggggagcgggtgagctacAgcgaggaggggactggggac	22	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47448250	G	G	47448250	1	3	116	0	1	0	0	0	0	0	0	0	12896	203	7	5		5	PTPN23	3	47448250	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1918038	47448250	150574180	460	109456											
PTPN23	25930	broad.mit.edu	37	chr3	47453615	47453615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccccagcaacttgctgCgcttcatccaggaggtgcac	10	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47453615	A	A	47453615	3	1	116	1	0	0	0	0	1	0	0	0	12896	768	27	3	4191	3	PTPN23	3	47453615	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5365	47453615	150568815	461	109457											
COL7A1	1294	broad.mit.edu	37	chr3	48615841	48615841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtcggggatcgggtgaGggtagtaagggggaaaaggg	23	2	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48615841	T	T	48615841	1	4	116	0	1	0	0	0	0	0	0	0	3736	1015	35	2		2	COL7A1	3	48615841	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1162226	48615841	149406589	462	109458											
RNF123	63891	broad.mit.edu	37	chr3	49739876	49739876	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcccactgtggatccccgGctgcactacacatgccatgc	9	17	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49739876	A	A	49739876	1	1	116	0	1	0	0	0	0	0	0	0	13544	1218	42	4		4	RNF123	3	49739876	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1124035	49739876	148282554	463	109459											
MST1R	4486	broad.mit.edu	37	chr3	49936282	49936282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaccctggccccaggcccTgcccctgcccacctcacctg	7	23	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49936282	C	C	49936282	1	2	116	0	1	0	0	0	0	0	0	0	9985	1595	55	5		5	MST1R	3	49936282	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	196406	49936282	148086148	464	109460											
SLC38A3	10991	broad.mit.edu	37	chr3	50253108	50253108	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcagtagggaggtggaCagccctgaaagctggctggt	18	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50253108	G	G	50253108	1	3	116	0	1	0	0	0	0	0	0	0	14719	493	17	4		4	SLC38A3	3	50253108	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	316826	50253108	147769322	465	109461											
STAB1	23166	broad.mit.edu	37	chr3	52536291	52536291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccagcgtccacctggggGcccacgcagatgcagtacct	13	16	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52536291	T	T	52536291	1	4	116	0	1	0	0	0	0	0	0	0	15355	1218	42	3		3	STAB1	3	52536291	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2283183	52536291	145486139	466	109462											
ITIH1	3697	broad.mit.edu	37	chr3	52817001	52817001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactccttaaaattctggGggacatgcagccaggggact	13	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52817001	T	T	52817001	3	4	116	1	0	0	0	0	1	0	0	0	7973	1232	43	2	993	2	ITIH1	3	52817001	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	280710	52817001	145205429	467	109463											
CACNA1D	776	broad.mit.edu	37	chr3	53535534	53535534	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccgaaataggatttgtgtAtgtcattttccttttaaaag	8	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53535534	G	G	53535534	1	3	116	0	1	0	0	0	0	0	0	0	2567	464	16	5		5	CACNA1D	3	53535534	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	718533	53535534	144486896	468	109464											
ERC2	26059	broad.mit.edu	37	chr3	56207487	56207487	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctaccttcatttcgatgAcagtctggagagccttcgtc	8	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56207487	G	G	56207487	3	3	116	1	0	0	0	0	1	0	0	0	5253	275	10	5	1783	5	ERC2	3	56207487	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	2671953	56207487	141814943	469	109465											
ARHGEF3	50650	broad.mit.edu	37	chr3	56771095	56771095	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgggtgacaaagcgagactCcatctcaaaaaagaacatga	9	9	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56771095	G	G	56771095	1	3	116	0	1	0	0	0	0	0	0	0	906	870	30	4		4	ARHGEF3	3	56771095	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	563608	56771095	141251335	470	109466											
ARF4	378	broad.mit.edu	37	chr3	57570220	57570220	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agacattatagatttaaaatCcagaccaaaagcacactcca	4	10	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57570220	A	A	57570220	1	1	116	0	1	0	0	0	0	0	0	0	848	870	30	3		3	ARF4	3	57570220	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	799125	57570220	140452210	471	109467											
ADAMTS9	56999	broad.mit.edu	37	chr3	64606734	64606734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcttctcctgctgggacCtcctgcaagactctcacaat	7	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64606734	A	A	64606734	1	1	116	0	1	0	0	0	0	0	0	0	273	696	24	2		2	ADAMTS9	3	64606734	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	7036514	64606734	133415696	472	109468											
FAM19A4	151647	broad.mit.edu	37	chr3	68802096	68802096	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaccgtttgtgaccgctcTtctatgcggttcttattgca	9	10	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68802096	A	A	68802096	3	1	116	1	0	0	0	0	1	0	0	0	5581	1606	56	5	230	5	FAM19A4	3	68802096	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	4195362	68802096	129220334	473	109469											
PPP4R2	151987	broad.mit.edu	37	chr3	73047217	73047217	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgataacgtttttttttcttCcttcatctagattttgagaa	5	6	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73047217	T	T	73047217	1	4	116	0	1	0	0	0	0	0	0	0	12505	870	30	4		4	PPP4R2	3	73047217	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4245121	73047217	124975213	474	109470											
PDZRN3	23024	broad.mit.edu	37	chr3	73433919	73433919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttcctctgccccgccaGcgggttggaggatgcggtgg	17	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73433919	T	T	73433919	3	4	116	1	0	0	0	0	1	0	0	0	11803	962	34	3	1406	3	PDZRN3	3	73433919	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	386702	73433919	124588511	475	109471											
ROBO2	6092	broad.mit.edu	37	chr3	77366530	77366530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgcctagtgtattgtcgGggttccatttctccgtagac	12	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77366530	T	T	77366530	1	4	116	0	1	0	0	0	0	0	0	0	13625	1247	43	2		2	ROBO2	3	77366530	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3932611	77366530	120655900	476	109472											
HTR1F	3355	broad.mit.edu	37	chr3	88039841	88039841	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttctctgaactgttttttCtcttcccttgttacaggtat	5	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88039841	T	T	88039841	1	4	116	0	1	0	0	0	0	0	0	0	7510	928	32	4		4	HTR1F	3	88039841	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	10673311	88039841	109982589	477	109473											
EPHA3	2042	broad.mit.edu	37	chr3	89390902	89390902	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctttgttgaactactttgCaggacctccatcttcaccaa	5	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89390902	G	G	89390902	1	3	116	0	1	0	0	0	0	0	0	0	5210	725	25	4		4	EPHA3	3	89390902	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1351061	89390902	108631528	478	109474											
DHFRL1	200895	broad.mit.edu	37	chr3	93780073	93780073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtaagttttaaggcatcatCcaaacttctggcaagaaaat	7	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93780073	A	A	93780073	3	1	116	1	0	0	0	0	1	0	0	0	4522	855	30	3	284	3	DHFRL1	3	93780073	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4389171	93780073	104242357	479	109475											
OR5K3	403277	broad.mit.edu	37	chr3	98109949	98109949	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcattcagatgactgcagGagcctacctagctggcaacc	10	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98109949	C	C	98109949	3	2	116	1	0	0	0	0	1	0	0	0	11262	1174	41	4	442	4	OR5K3	3	98109949	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4329876	98109949	99912481	480	109476											
ABI3BP	25890	broad.mit.edu	37	chr3	100569548	100569548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttctagaagttttaggtGggatagaatccagaatacga	12	4	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100569548	T	T	100569548	3	4	116	1	0	0	0	0	1	0	0	0	91	1348	47	2	2059	2	ABI3BP	3	100569548	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2459599	100569548	97452882	481	109477											
IMPG2	50939	broad.mit.edu	37	chr3	100964923	100964923	+	Frame_Shift_Del	DEL	G	-	-													gtgatggattcatctgctgaGggccatgcagcttgaaaggt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100964923	-	-	100964923	7	5	116	1	0	1	0	1	0	0	0	0	7799	987	35	0	2491	0	IMPG2	3	100964923	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	395375	100964923	97057507	482	109478											
SENP7	57337	broad.mit.edu	37	chr3	101060667	101060667	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtctcaaacatcataactTtcaaaagaacaaagtcaaaa	5	8	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101060667	A	A	101060667	1	1	116	0	1	0	0	0	0	0	0	0	14164	1856	64	5		5	SENP7	3	101060667	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	95744	101060667	96961763	483	109479											
ZPLD1	131368	broad.mit.edu	37	chr3	102181120	102181120	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agattttttattgtttcatcAttaggattcaacctacaacc	4	8	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102181120	T	T	102181120	1	4	116	0	1	0	0	0	0	0	0	0	18350	232	8	5		5	ZPLD1	3	102181120	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1120453	102181120	95841310	484	109480											
ZPLD1	131368	broad.mit.edu	37	chr3	102189322	102189322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagcgcggtgctctctGctggtcccatcattactcgg	12	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102189322	T	T	102189322	3	4	116	1	0	0	0	0	1	0	0	0	18350	1319	46	3	1100	3	ZPLD1	3	102189322	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	8202	102189322	95833108	485	109481											
CD96	10225	broad.mit.edu	37	chr3	111304157	111304157	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccactaactatgttttAtttgcctttaagctaaacca	6	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111304157	C	C	111304157	1	2	116	0	1	0	0	0	0	0	0	0	3078	464	16	5		5	CD96	3	111304157	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	9114835	111304157	86718273	486	109482											
PHLDB2	90102	broad.mit.edu	37	chr3	111603453	111603453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggcatctggctcgctcCtggccatgtggaatggaagt	15	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111603453	A	A	111603453	3	1	116	1	0	0	0	0	1	0	0	0	11947	680	24	2	616	2	PHLDB2	3	111603453	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	299296	111603453	86418977	487	109483											
TAGLN3	29114	broad.mit.edu	37	chr3	111732327	111732327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagaacgtaataggcctgCagatgggcagcaacaaggga	14	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111732327	A	A	111732327	3	1	116	1	0	0	0	0	1	0	0	0	15659	711	25	3	543	3	TAGLN3	3	111732327	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	128874	111732327	86290103	488	109484											
TMPRSS7	344805	broad.mit.edu	37	chr3	111782419	111782419	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccggtttatgtgtccctCaggcccagcgttgtgatgga	12	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111782419	G	G	111782419	3	3	116	1	0	0	0	0	1	0	0	0	16375	827	29	4	1151	4	TMPRSS7	3	111782419	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	50092	111782419	86240011	489	109485											
BOC	91653	broad.mit.edu	37	chr3	113002510	113002510	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacgctttcagtgggaggatCctgggtgggaaatgggggct	19	6	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113002510	A	A	113002510	1	1	116	0	1	0	0	0	0	0	0	0	1487	870	30	3		3	BOC	3	113002510	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1220091	113002510	85019920	490	109486											
WDR52	55779	broad.mit.edu	37	chr3	113127924	113127924	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatactcctgtgatatctaCtggcacctctattggttacc	6	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113127924	T	T	113127924	1	4	116	0	1	0	0	0	0	0	0	0	17431	580	20	4		4	WDR52	3	113127924	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	125414	113127924	84894506	491	109487											
KIAA2018	205717	broad.mit.edu	37	chr3	113377384	113377384	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcatcagtaatagttcctGtttgggatgtaaattcacac	8	7	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113377384	A	A	113377384	4	1	116	1	0	0	0	0	0	1	0	0	8338	1386	48	4	3596	4	KIAA2018	3	113377384	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	249460	113377384	84645046	492	109488											
KIAA2018	205717	broad.mit.edu	37	chr3	113378844	113378844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcatcactgttgggcatGgggtggtgctaggtggctga	16	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113378844	A	A	113378844	3	1	116	1	0	0	0	0	1	0	0	0	8338	1348	47	4	5056	4	KIAA2018	3	113378844	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1460	113378844	84643586	493	109489											
GRAMD1C	54762	broad.mit.edu	37	chr3	113604632	113604632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagacagcactgcactttGcagttgagcagctacatcaa	8	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113604632	T	T	113604632	1	4	116	0	1	0	0	0	0	0	0	0	6815	1334	46	3		3	GRAMD1C	3	113604632	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	225788	113604632	84417798	494	109490											
ZNF80	7634	broad.mit.edu	37	chr3	113955203	113955203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcataaggtttctctccaGtgtgactccttgtatgtcga	8	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113955203	T	T	113955203	3	4	116	1	0	0	0	0	1	0	0	0	18297	1029	36	3	106	3	ZNF80	3	113955203	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	350571	113955203	84067227	495	109491											
ZBTB20	26137	broad.mit.edu	37	chr3	114069770	114069770	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctccaccgagtcaggctcGgtgcctatggaggagctgac	14	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114069770	A	A	114069770	2	1	116	1	0	0	0	0	0	0	0	1	17655	1103	39	4		4	ZBTB20	3	114069770	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	114567	114069770	83952660	496	109492											
CD80	941	broad.mit.edu	37	chr3	119263667	119263667	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagaaacattgtgaccacAggacagcgttgccacttctt	8	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119263667	G	G	119263667	3	3	116	1	0	0	0	0	1	0	0	0	3068	188	7	5	734	5	CD80	3	119263667	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	5193897	119263667	78758763	497	109493											
NR1I2	8856	broad.mit.edu	37	chr3	119526124	119526124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagacccaaagaaagctgGaaccatgctgactttgtaca	10	9	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119526124	T	T	119526124	3	4	116	1	0	0	0	0	1	0	0	0	10715	1183	41	3	150	3	NR1I2	3	119526124	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	262457	119526124	78496306	498	109494											
HGD	3081	broad.mit.edu	37	chr3	120365227	120365227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctctggaatggaaagCagacactggtgtgccctctg	11	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120365227	A	A	120365227	1	1	116	0	1	0	0	0	0	0	0	0	7151	725	25	3		3	HGD	3	120365227	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	839103	120365227	77657203	499	109495											
RABL3	285282	broad.mit.edu	37	chr3	120413142	120413142	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgttgctattcataacttatCctgttgcatatttctgtagg	7	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120413142	A	A	120413142	1	1	116	0	1	0	0	0	0	0	0	0	13080	870	30	3		3	RABL3	3	120413142	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	47915	120413142	77609288	500	109496											
GTF2E1	2960	broad.mit.edu	37	chr3	120461471	120461471	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggagcgtgactgtcttgatCgaaggtttcactgaactcat	11	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120461471	A	A	120461471	1	1	116	0	1	0	0	0	0	0	0	0	6921	899	31	3		3	GTF2E1	3	120461471	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	48329	120461471	77560959	501	109497											
STXBP5L	9515	broad.mit.edu	37	chr3	120957869	120957869	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacattcatgaatcaccagtTacatgcacagcatactttgc	6	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120957869	A	A	120957869	2	1	116	1	0	0	0	0	0	0	0	1	15475	1741	61	5		5	STXBP5L	3	120957869	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	496398	120957869	77064561	502	109498											
POLQ	10721	broad.mit.edu	37	chr3	121230733	121230733	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttagtaaattctctcttaCctccagaatagctcgtatca	4	10	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121230733	G	G	121230733	5	3	116	1	0	0	0	0	0	0	1	0	12303	521	18	4	6244	4	POLQ	3	121230733	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	272864	121230733	76791697	503	109499											
CD86	942	broad.mit.edu	37	chr3	121825185	121825185	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaccaagaattcaactatcGagtatgatggtgttatgcag	10	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121825185	T	T	121825185	4	4	116	1	0	0	0	0	0	1	0	0	3073	1059	37	3	555	3	CD86	3	121825185	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	594452	121825185	76197245	504	109500											
DTX3L	151636	broad.mit.edu	37	chr3	122290646	122290646	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaaaaaatatattttaGgaggctgatttaatgccagt	7	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122290646	T	T	122290646	1	4	116	0	1	0	0	0	0	0	0	0	4836	1015	35	2		2	DTX3L	3	122290646	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	465461	122290646	75731784	505	109501											
KALRN	8997	broad.mit.edu	37	chr3	124282086	124282086	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgactgtgaagagaatgGgttgggaacttggagaggaa	16	4	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124282086	A	A	124282086	1	1	116	0	1	0	0	0	0	0	0	0	8045	1247	43	4		4	KALRN	3	124282086	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1991440	124282086	73740344	506	109502											
UMPS	7372	broad.mit.edu	37	chr3	124453975	124453975	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaactgcccaaaatgcAggcatcagttttgacaccgt	7	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124453975	T	T	124453975	2	4	116	1	0	0	0	0	0	0	0	1	17107	175	7	5		5	UMPS	3	124453975	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	171889	124453975	73568455	507	109503											
SLC41A3	54946	broad.mit.edu	37	chr3	125731602	125731602	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccaccaacacctacgaggaGaaaaggaatctgttttccct	8	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125731602	A	A	125731602	1	1	116	0	1	0	0	0	0	0	0	0	14745	957	33	4		4	SLC41A3	3	125731602	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1277627	125731602	72290828	508	109504											
PLXNA1	5361	broad.mit.edu	37	chr3	126707723	126707723	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggacaacgagaagtgctAcccgccgcccagcgtgcagt	14	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126707723	T	T	126707723	3	4	116	1	0	0	0	0	1	0	0	0	12214	391	14	5	289	5	PLXNA1	3	126707723	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	976121	126707723	71314707	509	109505											
COPG	22820	broad.mit.edu	37	chr3	128982866	128982866	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagtcaggggcattcggggGatgccaggtctcctggtgca	17	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128982866	T	T	128982866	1	4	116	0	1	0	0	0	0	0	0	0	3763	1189	41	3		3	COPG	3	128982866	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2275143	128982866	69039564	510	109506											
COL6A6	131873	broad.mit.edu	37	chr3	130363954	130363954	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaatgacacaaattttatCtgggctttctttgctgctgc	7	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130363954	A	A	130363954	1	1	116	0	1	0	0	0	0	0	0	0	3735	928	32	3		3	COL6A6	3	130363954	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1381088	130363954	67658476	511	109507											
NPHP3	27031	broad.mit.edu	37	chr3	132422939	132422939	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagccatgagattagacaacTaatataatcataaaccttaa	4	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132422939	A	A	132422939	1	1	116	0	1	0	0	0	0	0	0	0	10675	1537	53	5		5	NPHP3	3	132422939	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2058985	132422939	65599491	512	109508											
TF	7018	broad.mit.edu	37	chr3	133485215	133485215	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgccatacggcagttggcaGaaccgctggctggaacatcc	12	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133485215	C	C	133485215	3	2	116	1	0	0	0	0	1	0	0	0	15908	942	33	4	1470	4	TF	3	133485215	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1062276	133485215	64537215	513	109509											
EPHB1	2047	broad.mit.edu	37	chr3	134644612	134644612	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccactgtatagcaatccttCtgactcattgtttttgttta	6	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134644612	G	G	134644612	1	3	116	0	1	0	0	0	0	0	0	0	5216	928	32	4		4	EPHB1	3	134644612	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1159397	134644612	63377818	514	109510											
EPHB1	2047	broad.mit.edu	37	chr3	134670266	134670266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccatccgcacctaccaGgtgtgcaatgtcttcgagcc	8	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134670266	T	T	134670266	3	4	116	1	0	0	0	0	1	0	0	0	5216	991	35	2	187	2	EPHB1	3	134670266	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	25654	134670266	63352164	515	109511											
EPHB1	2047	broad.mit.edu	37	chr3	134920579	134920579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcatggcatgagttaaaGgggactctacatggctggga	15	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134920579	T	T	134920579	1	4	116	0	1	0	0	0	0	0	0	0	5216	1015	35	2		2	EPHB1	3	134920579	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	250313	134920579	63101851	516	109512											
PRR23C	389152	broad.mit.edu	37	chr3	138762737	138762737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggagctccgggcgcgcGtggggacctggactcggaga	19	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138762737	T	T	138762737	3	4	116	1	0	0	0	0	1	0	0	0	12702	1136	40	3	66	3	PRR23C	3	138762737	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3842158	138762737	59259693	517	109513											
CLSTN2	64084	broad.mit.edu	37	chr3	140281579	140281579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaggtcttgtaccacaagCcctggcttgtctcctctctt	8	13	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140281579	T	T	140281579	1	4	116	0	1	0	0	0	0	0	0	0	3594	754	26	4		4	CLSTN2	3	140281579	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1518842	140281579	57740851	518	109514											
SLC9A9	285195	broad.mit.edu	37	chr3	143297757	143297757	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcttccttatagccccatCccatgggatctatatattgc	6	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143297757	A	A	143297757	1	1	116	0	1	0	0	0	0	0	0	0	14835	870	30	3		3	SLC9A9	3	143297757	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3016178	143297757	54724673	519	109515											
PLOD2	5352	broad.mit.edu	37	chr3	145820679	145820679	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggctttagtaatttaaaaTacgtgtgtgtgtgtctgtat	10	3	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145820679	A	A	145820679	1	1	116	0	1	0	0	0	0	0	0	0	12197	1421	49	5		5	PLOD2	3	145820679	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2522922	145820679	52201751	520	109516											
CPB1	1360	broad.mit.edu	37	chr3	148558510	148558510	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagaaatgtggtggaggctCagtttgatagccgggttcgt	16	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148558510	A	A	148558510	3	1	116	1	0	0	0	0	1	0	0	0	3828	827	29	3	324	3	CPB1	3	148558510	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2737831	148558510	49463920	521	109517											
CPB1	1360	broad.mit.edu	37	chr3	148575195	148575195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtacagggcatttgtttGgcagtgtgcttttatttatt	10	4	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148575195	T	T	148575195	1	4	116	0	1	0	0	0	0	0	0	0	3828	1363	47	2		2	CPB1	3	148575195	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	16685	148575195	49447235	522	109518											
TM4SF1	4071	broad.mit.edu	37	chr3	149089533	149089533	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactccatttattacttgaaTaagacacaagatgaattcaa	4	8	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149089533	A	A	149089533	3	1	116	1	0	0	0	0	1	0	0	0	16089	1406	49	5	81	5	TM4SF1	3	149089533	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	514338	149089533	48932897	523	109519											
TSC22D2	9819	broad.mit.edu	37	chr3	150128499	150128499	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggtcgcgccttgtcagccGactggagtgcccccggctac	13	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150128499	T	T	150128499	2	4	116	1	0	0	0	0	0	0	0	1	16733	1045	37	3		3	TSC22D2	3	150128499	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1038966	150128499	47893931	524	109520											
AADAC	13	broad.mit.edu	37	chr3	151542581	151542581	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagaatcggtatttctggaGatagtgcaggagggaattta	14	3	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151542581	C	C	151542581	3	2	116	1	0	0	0	0	1	0	0	0	10	942	33	4	576	4	AADAC	3	151542581	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1414082	151542581	46479849	525	109521											
MBNL1	4154	broad.mit.edu	37	chr3	152174031	152174031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacactcttctgtatgttcGcttatatgattttccctccg	5	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152174031	T	T	152174031	1	4	116	0	1	0	0	0	0	0	0	0	9446	1102	38	3		3	MBNL1	3	152174031	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	631450	152174031	45848399	526	109522											
GPR149	344758	broad.mit.edu	37	chr3	154055653	154055653	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaccatcaggattactggtGggcaaaaagagggagtatga	13	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154055653	C	C	154055653	2	2	116	1	0	0	0	0	0	0	0	1	6719	1335	47	4		4	GPR149	3	154055653	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1881622	154055653	43966777	527	109523											
SI	6476	broad.mit.edu	37	chr3	164727062	164727063	+	Intron	DNP	CT	AC	AC													catagattgttcaaagcttaCttacaatccacaaaccatca							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	164727063	AC	AC	164727062	1	1	116	0	1	0	0	0	0	0	0	0	14410	580	20	3		3	SI	3	164727062	Intron	DNP	CT	TCGA-44-3918-01A-01D-1105-08	10671409	164727062	33295368	528	109524											
SERPINI2	5276	broad.mit.edu	37	chr3	167159974	167159974	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccataaacagaattgattCtagggaaaaaaaaacaaaaa	5	6	1	2	rs148696355		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167159974	T	T	167159974	1	4	116	0	1	0	0	0	0	0	0	0	14232	927	32	4		4	SERPINI2	3	167159974	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2432912	167159974	30862456	529	109525											
LRRC31	79782	broad.mit.edu	37	chr3	169572827	169572827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtggtgtacctatagtcCcagctgctagggagaccaag	12	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169572827	A	A	169572827	1	1	116	0	1	0	0	0	0	0	0	0	9073	638	22	2		2	LRRC31	3	169572827	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2412853	169572827	28449603	530	109526											
SLC7A14	57709	broad.mit.edu	37	chr3	170219108	170219108	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctgtggtcttggggactcGaactccaaactctgcatagc	10	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170219108	C	C	170219108	3	2	116	1	0	0	0	0	1	0	0	0	14810	1066	37	4	2008	4	SLC7A14	3	170219108	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	646281	170219108	27803322	531	109527											
PLD1	5337	broad.mit.edu	37	chr3	171323120	171323120	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagcatttcgagctgctGttgaaacccacacctccttg	8	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171323120	A	A	171323120	3	1	116	1	0	0	0	0	1	0	0	0	12140	1377	48	4	263	4	PLD1	3	171323120	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1104012	171323120	26699310	532	109528											
SPATA16	83893	broad.mit.edu	37	chr3	172834904	172834904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctatattttctttaatcCcatacctcaagtgctgttct	3	10	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172834904	A	A	172834904	1	1	116	0	1	0	0	0	0	0	0	0	15117	638	22	2		2	SPATA16	3	172834904	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1511784	172834904	25187526	533	109529											
NLGN1	22871	broad.mit.edu	37	chr3	173996901	173996901	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaataccagacgacccccaGatattgatggagcaaggaga	11	9	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173996901	T	T	173996901	3	4	116	1	0	0	0	0	1	0	0	0	10556	933	33	3	1124	3	NLGN1	3	173996901	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1161997	173996901	24025529	534	109530											
ACTL6A	86	broad.mit.edu	37	chr3	179287864	179287864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactcttacaggtggattttCctacagctattggtatggtg	11	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179287864	A	A	179287864	3	1	116	1	0	0	0	0	1	0	0	0	198	855	30	3	122	3	ACTL6A	3	179287864	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5290963	179287864	18734566	535	109531											
PEX5L	51555	broad.mit.edu	37	chr3	179597701	179597701	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggttgagcatccatagccgCaagcgattgccttacctaga	10	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179597701	G	G	179597701	1	3	116	0	1	0	0	0	0	0	0	0	11844	725	25	4		4	PEX5L	3	179597701	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	309837	179597701	18424729	536	109532											
MCF2L2	23101	broad.mit.edu	37	chr3	183056751	183056751	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaggagagagaaaaatgtCatattcgttaccagggtcta	12	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183056751	A	A	183056751	1	1	116	0	1	0	0	0	0	0	0	0	9473	841	29	3		3	MCF2L2	3	183056751	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3459050	183056751	14965679	537	109533											
KLHL24	54800	broad.mit.edu	37	chr3	183382992	183382992	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatataaacaatatgacactGtacttttgaatggatatttt	6	4	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183382992	C	C	183382992	1	2	116	0	1	0	0	0	0	0	0	0	8450	1392	48	4		4	KLHL24	3	183382992	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	326241	183382992	14639438	538	109534											
YEATS2	55689	broad.mit.edu	37	chr3	183435415	183435415	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgattaattaggccttggAtgtattttatgttctttgta	8	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183435415	T	T	183435415	1	4	116	0	1	0	0	0	0	0	0	0	17599	348	12	5		5	YEATS2	3	183435415	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	52423	183435415	14587015	539	109535											
ECE2	9718	broad.mit.edu	37	chr3	183995122	183995122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggaccgaggggtgagcCcctgtgaggacttttaccag	14	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183995122	A	A	183995122	3	1	116	1	0	0	0	0	1	0	0	0	4930	623	22	2	1278	2	ECE2	3	183995122	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	559707	183995122	14027308	540	109536											
CLCN2	1181	broad.mit.edu	37	chr3	184076898	184076898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttggcaaaggccccaaggtCctgagtgtaccggccataca	11	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184076898	A	A	184076898	3	1	116	1	0	0	0	0	1	0	0	0	3494	855	30	3	2703	3	CLCN2	3	184076898	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	81776	184076898	13945532	541	109537											
DGKG	1608	broad.mit.edu	37	chr3	185882676	185882676	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaggctgttgggtgacaAagaggcatacctgatggtga	16	6	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185882676	T	T	185882676	1	4	116	0	1	0	0	0	0	0	0	0	4509	29	1	5		5	DGKG	3	185882676	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1805778	185882676	12139754	542	109538											
DGKG	1608	broad.mit.edu	37	chr3	185997780	185997780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgtggaatccaaagagCaatcattgtccattttcatc	6	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185997780	A	A	185997780	1	1	116	0	1	0	0	0	0	0	0	0	4509	725	25	3		3	DGKG	3	185997780	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	115104	185997780	12024650	543	109539											
CRYGS	1427	broad.mit.edu	37	chr3	186257006	186257006	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatgagctgctctaagaTgttactcaagcctcagcagc	10	10	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186257006	C	C	186257006	1	2	116	0	1	0	0	0	0	0	0	0	3951	1479	51	5		5	CRYGS	3	186257006	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	259226	186257006	11765424	544	109540											
KNG1	3827	broad.mit.edu	37	chr3	186456894	186456894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaatttttcaggtggtgGctggcaagaaatattttatt	9	3	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186456894	T	T	186456894	3	4	116	1	0	0	0	0	1	0	0	0	8498	1203	42	3	967	3	KNG1	3	186456894	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	199888	186456894	11565536	545	109541											
FGF12	2257	broad.mit.edu	37	chr3	191861764	191861764	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggaagggaaggggaaGggatgagagagggaagaagg	24	0	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191861764	T	T	191861764	1	4	116	0	1	0	0	0	0	0	0	0	5898	1015	35	2		2	FGF12	3	191861764	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	5404870	191861764	6160666	546	109542											
ATP13A4	84239	broad.mit.edu	37	chr3	193156789	193156789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgaatgtgagattatggcCacacaaactggtagctactt	9	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193156789	A	A	193156789	1	1	116	0	1	0	0	0	0	0	0	0	1130	609	21	2		2	ATP13A4	3	193156789	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1295025	193156789	4865641	547	109543											
ATP13A4	84239	broad.mit.edu	37	chr3	193183721	193183721	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgtttcccaggtttgTaaaccacatcctaggttaag	9	8	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193183721	C	C	193183721	1	2	116	0	1	0	0	0	0	0	0	0	1130	1653	57	5		5	ATP13A4	3	193183721	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	26932	193183721	4838709	548	109544											
CPN2	1370	broad.mit.edu	37	chr3	194062671	194062671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggagagcggcaggtgcGtgatggcgttgcgttgcagc	19	7	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194062671	T	T	194062671	3	4	116	1	0	0	0	0	1	0	0	0	3842	1145	40	3	880	3	CPN2	3	194062671	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	878950	194062671	3959759	549	109545											
FYTTD1	84248	broad.mit.edu	37	chr3	197495447	197495447	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcctatgaatcgtccacctCtaagtgacaaggtaggatga	10	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197495447	G	G	197495447	3	3	116	1	0	0	0	0	1	0	0	0	6187	912	32	4	412	4	FYTTD1	3	197495447	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3432776	197495447	526983	550	109546											
PDE6B	5158	broad.mit.edu	37	chr4	660499	660499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtggactcacacgggccCggcggtgtcctcactggagt	15	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	660499	A	A	660499	1	1	116	0	1	0	0	0	0	0	0	0	11740	667	23	1		1	PDE6B	4	660499	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08		660499	190493777	551	109547											
CPLX1	10815	broad.mit.edu	37	chr4	818128	818128	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcgctgctgggcacggtcCttgctcctctgccccaggct	14	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	818128	G	G	818128	1	3	116	0	1	0	0	0	0	0	0	0	3836	696	24	4		4	CPLX1	4	818128	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	157629	818128	190336148	552	109548											
TACC3	10460	broad.mit.edu	37	chr4	1729232	1729232	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtggttgtgtccagccgttCcaccgggagctggtccctgg	15	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1729232	T	T	1729232	1	4	116	0	1	0	0	0	0	0	0	0	15622	870	30	4		4	TACC3	4	1729232	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	911104	1729232	189425044	553	109549											
RNF4	6047	broad.mit.edu	37	chr4	2513616	2513616	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtcagaaaaaagaaatggCttcgtttatcacttatatca	6	7	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2513616	T	T	2513616	1	4	116	0	1	0	0	0	0	0	0	0	13603	812	28	4		4	RNF4	4	2513616	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	784384	2513616	188640660	554	109550											
GRK4	2868	broad.mit.edu	37	chr4	3029638	3029639	+	Splice_Site	DNP	GG	TT	TT													ataacatatttgaacacacaGgacacatccggatttcagac							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	3029639	TT	TT	3029638	5	4	116	1	0	0	0	0	0	0	1	0	6857	1014	35	2	1012	2	GRK4	4	3029638	Splice_Site	DNP	GG	TCGA-44-3918-01A-01D-1105-08	516022	3029638	188124638	555	109551											
GRK4	2868	broad.mit.edu	37	chr4	3038967	3038967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcctcaagtgagaggggCctggcaaaagaatggagaca	14	7	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3038967	A	A	3038967	1	1	116	0	1	0	0	0	0	0	0	0	6857	754	26	3		3	GRK4	4	3038967	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	9329	3038967	188115309	556	109552											
RGS12	6002	broad.mit.edu	37	chr4	3418535	3418535	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggactgaaacgatgtcctttCaggacagggccagtggttgc	14	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3418535	A	A	3418535	1	1	116	0	1	0	0	0	0	0	0	0	13404	841	29	3		3	RGS12	4	3418535	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	379568	3418535	187735741	557	109553											
MSX1	4487	broad.mit.edu	37	chr4	4864420	4864420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctttttttttctttcgGccctcagggcggctgagccc	10	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4864420	T	T	4864420	1	4	116	0	1	0	0	0	0	0	0	0	9989	1218	42	3		3	MSX1	4	4864420	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1445885	4864420	186289856	558	109554											
JAKMIP1	152789	broad.mit.edu	37	chr4	6066531	6066531	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggcaagggagcgaaacttGcaactatcaaaagcaggagg	13	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6066531	A	A	6066531	1	1	116	0	1	0	0	0	0	0	0	0	8010	1334	46	4		4	JAKMIP1	4	6066531	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1202111	6066531	185087745	559	109555											
AFAP1	60312	broad.mit.edu	37	chr4	7795473	7795473	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcaatgtagtcatagtgCagagcctccgggtctgtgga	12	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7795473	A	A	7795473	2	1	116	1	0	0	0	0	0	0	0	1	353	697	25	3		3	AFAP1	4	7795473	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1728942	7795473	183358803	560	109556											
PROM1	8842	broad.mit.edu	37	chr4	16010666	16010666	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatgctgagagtatatcctGaataggaagacgctgagtta	12	5	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16010666	T	T	16010666	3	4	116	1	0	0	0	0	1	0	0	0	12661	1299	45	3	1454	3	PROM1	4	16010666	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	8215193	16010666	175143610	561	109557											
PCDH7	5099	broad.mit.edu	37	chr4	30724540	30724540	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggactatgaggccacccGggagttcaacgtggtcatcg	13	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30724540	A	A	30724540	3	1	116	1	0	0	0	0	1	0	0	0	11610	1116	39	4	1498	4	PCDH7	4	30724540	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	14713874	30724540	160429736	562	109558											
TBC1D1	23216	broad.mit.edu	37	chr4	38037262	38037262	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaattgattatttcttttctGagatgtttatatgaagagaa	8	2	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38037262	C	C	38037262	2	2	116	1	0	0	0	0	0	0	0	1	15716	1277	45	4		4	TBC1D1	4	38037262	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	7312722	38037262	153117014	563	109559											
TMEM156	80008	broad.mit.edu	37	chr4	38972821	38972821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaagagacaggcttatTctaatgtagtaagagtagca	10	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38972821	A	A	38972821	1	1	116	0	1	0	0	0	0	0	0	0	16196	1798	62	5		5	TMEM156	4	38972821	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	935559	38972821	152181455	564	109560											
KLHL5	51088	broad.mit.edu	37	chr4	39109334	39109334	+	Frame_Shift_Del	DEL	G	-	-													cctaggagtacagtaggtgtGgcagtactaagtggaaagta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39109334	-	-	39109334	7	5	116	1	0	1	0	1	0	0	0	0	8463	1335	47	0	1839	0	KLHL5	4	39109334	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	136513	39109334	152044942	565	109561											
LIMCH1	22998	broad.mit.edu	37	chr4	41615532	41615532	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtatccgagacagtggctAcatcgactgctgggattccg	12	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41615532	T	T	41615532	3	4	116	1	0	0	0	0	1	0	0	0	8869	391	14	5	590	5	LIMCH1	4	41615532	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	2506198	41615532	149538744	566	109562											
GABRB1	2560	broad.mit.edu	37	chr4	47034103	47034104	+	Intron	DEL	AG	-	-													taaatgtcaaaaaaaaaaaaAgaaaaggcatgtcattttcg					rs67779259		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47034104	-	-	47034103	6	5	116	0	1	1	0	1	0	0	0	0	6226	87	3	0		0	GABRB1	4	47034103	Intron	DEL	AG	TCGA-44-3918-01A-01D-1105-08	5418571	47034103	144120173	567	109563											
ATP10D	57205	broad.mit.edu	37	chr4	47493055	47493055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaggttccttcccattgGctctcacaaagtgtgcttct	8	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47493055	T	T	47493055	1	4	116	0	1	0	0	0	0	0	0	0	1122	1218	42	3		3	ATP10D	4	47493055	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	458952	47493055	143661221	568	109564											
CORIN	10699	broad.mit.edu	37	chr4	47708553	47708553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaactgggctacaaggcCaagcaaggttacgttataca	10	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47708553	A	A	47708553	1	1	116	0	1	0	0	0	0	0	0	0	3784	609	21	2		2	CORIN	4	47708553	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	215498	47708553	143445723	569	109565											
TXK	7294	broad.mit.edu	37	chr4	48088373	48088373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgggttacacaatgagCttgagcaaagttgtgacaca	11	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48088373	A	A	48088373	1	1	116	0	1	0	0	0	0	0	0	0	16912	812	28	3		3	TXK	4	48088373	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	379820	48088373	143065903	570	109566											
SPATA18	132671	broad.mit.edu	37	chr4	52926770	52926770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttttgtgttctttgactGttggtgtggttgggtttctc	12	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52926770	T	T	52926770	1	4	116	0	1	0	0	0	0	0	0	0	15119	1392	48	3		3	SPATA18	4	52926770	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4838397	52926770	138227506	571	109567											
PDGFRA	5156	broad.mit.edu	37	chr4	55087415	55087415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaatttctacgggagaaGgctggatatctcgggaatgt	13	6	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55087415	T	T	55087415	1	4	116	0	1	0	0	0	0	0	0	0	11755	1015	35	2		2	PDGFRA	4	55087415	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2160645	55087415	136066861	572	109568											
CENPC1	1060	broad.mit.edu	37	chr4	68374686	68374686	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttggttgcctttagttgCtgtcttctgccttttaagtg	9	8	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68374686	G	G	68374686	3	3	116	1	0	0	0	0	1	0	0	0	3259	797	28	4	1121	4	CENPC1	4	68374686	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	13287271	68374686	122779590	573	109569											
UBA6	55236	broad.mit.edu	37	chr4	68512442	68512442	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagagaaatttcattattacCgtgggagaaattcttcacat	7	6	3	2	rs140068938		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68512442	G	G	68512442	3	3	116	1	0	0	0	0	1	0	0	0	16958	666	23	4	1918	4	UBA6	4	68512442	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	137756	68512442	122641834	574	109570											
UGT2B4	7363	broad.mit.edu	37	chr4	70346519	70346519	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgcaacccgaaggtgctTggctcctttatggcgcatga	13	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70346519	C	C	70346519	3	2	116	1	0	0	0	0	1	0	0	0	17087	1821	63	5	170	5	UGT2B4	4	70346519	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	1834077	70346519	120807757	575	109571											
UGT2B4	7363	broad.mit.edu	37	chr4	70346553	70346553	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcatgacaaattcaatccaGaagactgctcgatcaagggg	10	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70346553	T	T	70346553	3	4	116	1	0	0	0	0	1	0	0	0	17087	933	33	3	204	3	UGT2B4	4	70346553	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	34	70346553	120807723	576	109572											
ADAMTS3	9508	broad.mit.edu	37	chr4	73414200	73414200	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggagtcttaccagacCatcacagttgctgatggcaa	10	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73414200	T	T	73414200	3	4	116	1	0	0	0	0	1	0	0	0	267	594	21	4	3198	4	ADAMTS3	4	73414200	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3067647	73414200	117740076	577	109573											
ANKRD17	26057	broad.mit.edu	37	chr4	73979401	73979401	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtagaaagaaatcatgtacGtaatttaaagcaaacaaaac	6	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73979401	C	C	73979401	1	2	116	0	1	0	0	0	0	0	0	0	646	1160	40	4		4	ANKRD17	4	73979401	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	565201	73979401	117174875	578	109574											
PPEF2	5470	broad.mit.edu	37	chr4	76781891	76781891	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcattctgaggcatcgcCctctgggcaggatttctcca	12	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76781891	G	G	76781891	3	3	116	1	0	0	0	0	1	0	0	0	12404	623	22	4	74	4	PPEF2	4	76781891	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2802490	76781891	114372385	579	109575											
SHROOM3	57619	broad.mit.edu	37	chr4	77631272	77631272	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcctgtccatgaacacCatcatgctcagcttcttctt	6	14	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77631272	T	T	77631272	1	4	116	0	1	0	0	0	0	0	0	0	14408	609	21	4		4	SHROOM3	4	77631272	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	849381	77631272	113523004	580	109576											
SHROOM3	57619	broad.mit.edu	37	chr4	77661931	77661931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcggtcagcagctgagcGgaggagcgtcggacagcggc	18	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77661931	A	A	77661931	3	1	116	1	0	0	0	0	1	0	0	0	14408	1117	39	4	2623	4	SHROOM3	4	77661931	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	30659	77661931	113492345	581	109577											
BMP3	651	broad.mit.edu	37	chr4	81974563	81974563	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgtgggggtcgttcctgGgattcctgagccttgctgtg	16	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81974563	C	C	81974563	3	2	116	1	0	0	0	0	1	0	0	0	1467	1232	43	4	1302	4	BMP3	4	81974563	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4312632	81974563	109179713	582	109578											
HNRNPD	3184	broad.mit.edu	37	chr4	83277876	83277876	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactaaagtcagaagatcaGcaaagatctttacttcagga	7	8	5	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83277876	A	A	83277876	1	1	116	0	1	0	0	0	0	0	0	0	7331	986	34	4		4	HNRNPD	4	83277876	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1303313	83277876	107876400	583	109579											
SCD5	79966	broad.mit.edu	37	chr4	83552684	83552684	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcacctggaagacaaagCgggcattgatataattcaat	8	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83552684	T	T	83552684	1	4	116	0	1	0	0	0	0	0	0	0	13999	783	27	4		4	SCD5	4	83552684	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	274808	83552684	107601592	584	109580											
WDFY3	23001	broad.mit.edu	37	chr4	85617181	85617181	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggctgtctcctttagtGggtcattgatgttgtagata	12	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85617181	A	A	85617181	3	1	116	1	0	0	0	0	1	0	0	0	17397	1348	47	4	1781	4	WDFY3	4	85617181	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2064497	85617181	105537095	585	109581											
WDFY3	23001	broad.mit.edu	37	chr4	85742232	85742232	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaaattacagacaatacTttaccttgttcatttagtgc	4	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85742232	A	A	85742232	1	1	116	0	1	0	0	0	0	0	0	0	17397	1624	56	5		5	WDFY3	4	85742232	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	125051	85742232	105412044	586	109582											
MAPK10	5602	broad.mit.edu	37	chr4	87022299	87022299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgaagcttgtgcctgctgtCctggccagtccaaagtccag	11	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87022299	A	A	87022299	3	1	116	1	0	0	0	0	1	0	0	0	9364	854	30	3	791	3	MAPK10	4	87022299	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1280067	87022299	104131977	587	109583											
ABCG2	9429	broad.mit.edu	37	chr4	89043006	89043006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattatcatttggtgagctcCtaacgtgtgccagtcctgta	9	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89043006	T	T	89043006	1	4	116	0	1	0	0	0	0	0	0	0	69	696	24	4		4	ABCG2	4	89043006	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2020707	89043006	102111270	588	109584											
GRID2	2895	broad.mit.edu	37	chr4	94145723	94145723	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttccttattcctgatgactGgtgtcaatgattctaatgat	7	7	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94145723	C	C	94145723	1	2	116	0	1	0	0	0	0	0	0	0	6838	1363	47	4		4	GRID2	4	94145723	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5102717	94145723	97008553	589	109585											
GRID2	2895	broad.mit.edu	37	chr4	94344041	94344041	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttaactacgaaatttaCgtagcaccggatcacaaata	7	8	1	0	rs140894316	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94344041	A	A	94344041	4	1	116	1	0	0	0	0	0	1	0	0	6838	547	19	3	1505	3	GRID2	4	94344041	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	198318	94344041	96810235	590	109586											
GRID2	2895	broad.mit.edu	37	chr4	94693256	94693256	+	Frame_Shift_Del	DEL	C	-	-													gaaattgacctggagcacctCcatagacgtgtaaatagctt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94693256	-	-	94693256	7	5	116	1	0	1	0	1	0	0	0	0	6838	842	30	0	2693	0	GRID2	4	94693256	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	349215	94693256	96461020	591	109587											
MANBA	4126	broad.mit.edu	37	chr4	103673139	103673139	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggaagtgcagagtctaTagctgttgatagctcaggaa	13	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103673139	C	C	103673139	1	2	116	0	1	0	0	0	0	0	0	0	9311	1421	49	5		5	MANBA	4	103673139	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	8979883	103673139	87481137	592	109588											
NHEDC1	150159	broad.mit.edu	37	chr4	103822425	103822425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactgtcatcacatccttcGcatatggttccaagtggggt	9	11	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103822425	T	T	103822425	3	4	116	1	0	0	0	0	1	0	0	0	10495	1087	38	3	254	3	NHEDC1	4	103822425	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	149286	103822425	87331851	593	109589											
CENPE	1062	broad.mit.edu	37	chr4	104067249	104067249	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaggactgttcttgtttgcTttgagactcctggatcttaa	9	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104067249	C	C	104067249	3	2	116	1	0	0	0	0	1	0	0	0	3260	1609	56	5	4035	5	CENPE	4	104067249	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	244824	104067249	87087027	594	109590											
NPNT	255743	broad.mit.edu	37	chr4	106863837	106863837	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtacagacagaccctcaGaaacccagaggagatgtgtt	12	9	1	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106863837	T	T	106863837	3	4	116	1	0	0	0	0	1	0	0	0	10685	933	33	3	1316	3	NPNT	4	106863837	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2796588	106863837	84290439	595	109591											
LEF1	51176	broad.mit.edu	37	chr4	109004522	109004522	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggttcttaccagccaagagGtggggtgatctgtccaacac	12	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109004522	C	C	109004522	3	2	116	1	0	0	0	0	1	0	0	0	8786	1261	44	4	683	4	LEF1	4	109004522	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2140685	109004522	82149754	596	109592											
AGXT2L1	64850	broad.mit.edu	37	chr4	109663949	109663949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttgaaatgtgatgtcaaCagaaaatccgggactccgag	10	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109663949	A	A	109663949	1	1	116	0	1	0	0	0	0	0	0	0	406	493	17	3		3	AGXT2L1	4	109663949	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	659427	109663949	81490327	597	109593											
ANK2	287	broad.mit.edu	37	chr4	114257011	114257011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtcttagtactggataGcccagaagacctagaaaaga	9	8	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114257011	T	T	114257011	3	4	116	1	0	0	0	0	1	0	0	0	621	971	34	3	3572	3	ANK2	4	114257011	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4593062	114257011	76897265	598	109594											
ANK2	287	broad.mit.edu	37	chr4	114276714	114276714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaaagaggccactctaGgctctcccaaagacacaagc	8	13	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114276714	T	T	114276714	3	4	116	1	0	0	0	0	1	0	0	0	621	1000	35	2	7155	2	ANK2	4	114276714	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	19703	114276714	76877562	599	109595											
NDST3	9348	broad.mit.edu	37	chr4	119064718	119064718	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttttccttcaggttctccCaagacaaacctgtgggcttt	7	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119064718	G	G	119064718	3	3	116	1	0	0	0	0	1	0	0	0	10352	594	21	4	1436	4	NDST3	4	119064718	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4788004	119064718	72089558	600	109596											
SYNPO2	171024	broad.mit.edu	37	chr4	119952640	119952640	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcgagctcagtctcccActccatctctcccggccagt	7	19	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119952640	T	T	119952640	3	4	116	1	0	0	0	0	1	0	0	0	15576	159	6	5	2724	5	SYNPO2	4	119952640	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	887922	119952640	71201636	601	109597											
SYNPO2	171024	broad.mit.edu	37	chr4	119979120	119979120	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacggatcatgtgccaactgTagttttttaaaaaaaacgct	7	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119979120	C	C	119979120	1	2	116	0	1	0	0	0	0	0	0	0	15576	1653	57	5		5	SYNPO2	4	119979120	3'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	26480	119979120	71175156	602	109598											
KIAA1109	84162	broad.mit.edu	37	chr4	123192197	123192197	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccatgtgaatcttcctccActtgagttcaaaccagcatt	7	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123192197	T	T	123192197	2	4	116	1	0	0	0	0	0	0	0	1	8278	146	6	5		5	KIAA1109	4	123192197	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	3213077	123192197	67962079	603	109599											
KIAA1109	84162	broad.mit.edu	37	chr4	123207825	123207825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccctgttaccatgtcagGgaaatatataatggaagaac	8	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123207825	T	T	123207825	3	4	116	1	0	0	0	0	1	0	0	0	8278	1232	43	2	9369	2	KIAA1109	4	123207825	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	15628	123207825	67946451	604	109600											
ADAD1	132612	broad.mit.edu	37	chr4	123332560	123332560	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacagttgtaagtattataGaagttgtttttaaaagcaag	8	3	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123332560	T	T	123332560	1	4	116	0	1	0	0	0	0	0	0	0	231	957	33	3		3	ADAD1	4	123332560	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	124735	123332560	67821716	605	109601											
SPATA5	166378	broad.mit.edu	37	chr4	123844162	123844162	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctcccaccacgctgtgcActgctgcgctccactcaggg	9	19	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123844162	G	G	123844162	1	3	116	0	1	0	0	0	0	0	0	0	15127	174	6	5		5	SPATA5	4	123844162	5'Flank	SNP	A	TCGA-44-3918-01A-01D-1105-08	511602	123844162	67310114	606	109602											
FAT4	79633	broad.mit.edu	37	chr4	126241500	126241500	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttagatgaaaatgacaatAccccttctttccctaaatca	3	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126241500	T	T	126241500	3	4	116	1	0	0	0	0	1	0	0	0	5749	391	14	5	3936	5	FAT4	4	126241500	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	2397338	126241500	64912776	607	109603											
FAT4	79633	broad.mit.edu	37	chr4	126336650	126336650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatataatacaagtgttcGcagcagatggagatgaaggc	12	6	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126336650	T	T	126336650	3	4	116	1	0	0	0	0	1	0	0	0	5749	1087	38	3	6550	3	FAT4	4	126336650	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	95150	126336650	64817626	608	109604											
PCDH10	57575	broad.mit.edu	37	chr4	134084189	134084189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgggccactcagatcGgtgctggatgccttcttttg	12	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134084189	T	T	134084189	3	4	116	1	0	0	0	0	1	0	0	0	11601	1116	39	1	2929	1	PCDH10	4	134084189	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	7747539	134084189	57070087	609	109605											
PCDH18	54510	broad.mit.edu	37	chr4	138453099	138453099	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacatcagccacatcctcTgatagtcttgcaattactga	5	11	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138453099	A	A	138453099	2	1	116	1	0	0	0	0	0	0	0	1	11607	1567	55	5		5	PCDH18	4	138453099	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	4368910	138453099	52701177	610	109606											
MAML3	55534	broad.mit.edu	37	chr4	140809599	140809599	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctcttgaattcatccatgTagggcagggggagtcgcttt	12	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140809599	C	C	140809599	1	2	116	0	1	0	0	0	0	0	0	0	9299	1653	57	5		5	MAML3	4	140809599	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2356500	140809599	50344677	611	109607											
TBC1D9	23158	broad.mit.edu	37	chr4	141590959	141590959	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgggtcgagagtacacCtgtcaatacagagaggaaca	12	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141590959	A	A	141590959	5	1	116	1	0	0	0	0	0	0	1	0	15749	695	24	2	2590	2	TBC1D9	4	141590959	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	781360	141590959	49563317	612	109608											
RNF150	57484	broad.mit.edu	37	chr4	141868976	141868976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacccaaggagagcttgCctggagcaaagctttccgct	10	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141868976	A	A	141868976	1	1	116	0	1	0	0	0	0	0	0	0	13562	754	26	3		3	RNF150	4	141868976	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	278017	141868976	49285300	613	109609											
PRMT10	90826	broad.mit.edu	37	chr4	148575242	148575242	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgtatggtttaacctgCccaagtgtgccagcaataac	9	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148575242	A	A	148575242	2	1	116	1	0	0	0	0	0	0	0	1	12642	726	26	3		3	PRMT10	4	148575242	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	6706266	148575242	42579034	614	109610											
FHDC1	85462	broad.mit.edu	37	chr4	153896629	153896629	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcctgacacccatgggcaGagatgccctggggagtctca	13	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153896629	C	C	153896629	3	2	116	1	0	0	0	0	1	0	0	0	5933	942	33	4	2228	4	FHDC1	4	153896629	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	5321387	153896629	37257647	615	109611											
DCHS2	54798	broad.mit.edu	37	chr4	155249266	155249266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagatactgagtatgtaaCttctgcattatttccttcat	6	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155249266	A	A	155249266	3	1	116	1	0	0	0	0	1	0	0	0	4321	565	20	3	6270	3	DCHS2	4	155249266	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1352637	155249266	35905010	616	109612											
RBM46	166863	broad.mit.edu	37	chr4	155749036	155749036	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagactacaatttccatcgCagctcaataaatagtctttc	4	11	2	1	rs146619160		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155749036	A	A	155749036	2	1	116	1	0	0	0	0	0	0	0	1	13248	697	25	3		3	RBM46	4	155749036	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	499770	155749036	35405240	617	109613											
GRIA2	2891	broad.mit.edu	37	chr4	158257624	158257624	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgagcctcgggatatctatCatgatcaagaagcctcagaa	9	9	4	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158257624	T	T	158257624	2	4	116	1	0	0	0	0	0	0	0	1	6834	816	29	4		4	GRIA2	4	158257624	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	2508588	158257624	32896652	618	109614											
FNIP2	57600	broad.mit.edu	37	chr4	159772515	159772515	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacctttcccatctccaaGctcctctacatcttcttcca	1	19	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159772515	A	A	159772515	3	1	116	1	0	0	0	0	1	0	0	0	6034	971	34	4	800	4	FNIP2	4	159772515	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1514891	159772515	31381761	619	109615											
FSTL5	56884	broad.mit.edu	37	chr4	162307436	162307436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggaaactgctccggtGctgtcaggtttgcagccaat	14	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162307436	T	T	162307436	3	4	116	1	0	0	0	0	1	0	0	0	6140	1310	46	3	540	3	FSTL5	4	162307436	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2534921	162307436	28846840	620	109616											
SC4MOL	6307	broad.mit.edu	37	chr4	166261514	166261514	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattcgtttattagaaactAttgatgtccataggtgagta	8	6	0	3	rs145987291		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166261514	C	C	166261514	3	2	116	1	0	0	0	0	1	0	0	0	13977	449	16	5	687	5	SC4MOL	4	166261514	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	3954078	166261514	24892762	621	109617											
CPE	1363	broad.mit.edu	37	chr4	166325877	166325877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacacctggtagtatagaaGccaggtccatccttaaccac	8	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166325877	T	T	166325877	1	4	116	0	1	0	0	0	0	0	0	0	3831	986	34	3		3	CPE	4	166325877	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	64363	166325877	24828399	622	109618											
CPE	1363	broad.mit.edu	37	chr4	166385677	166385677	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattgtcaacctgatccacaGtacccgcattcacatcatgc	5	14	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166385677	C	C	166385677	3	2	116	1	0	0	0	0	1	0	0	0	3831	1029	36	4	449	4	CPE	4	166385677	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	59800	166385677	24768599	623	109619											
CPE	1363	broad.mit.edu	37	chr4	166405728	166405728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtagatggaaccaccaaCggtggtgcttggtacagcgt	13	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166405728	A	A	166405728	3	1	116	1	0	0	0	0	1	0	0	0	3831	535	19	3	963	3	CPE	4	166405728	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	20051	166405728	24748548	624	109620											
NEK1	4750	broad.mit.edu	37	chr4	170498205	170498205	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcataacagaaatcgaGttttgtcctgaagctggtct	11	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170498205	A	A	170498205	2	1	116	1	0	0	0	0	0	0	0	1	10416	1020	36	4		4	NEK1	4	170498205	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	4092477	170498205	20656071	625	109621											
GALNTL6	442117	broad.mit.edu	37	chr4	172735859	172735859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaagtcagcggagcccgGggagcagcaggtaagtgcca	18	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172735859	T	T	172735859	3	4	116	1	0	0	0	0	1	0	0	0	6287	1232	43	2	130	2	GALNTL6	4	172735859	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2237654	172735859	18418417	626	109622											
GALNTL6	442117	broad.mit.edu	37	chr4	173232936	173232936	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatcagtgatcagggtgggTttttttggttttttttgtcc	11	4	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173232936	A	A	173232936	1	1	116	0	1	0	0	0	0	0	0	0	6287	1740	60	5		5	GALNTL6	4	173232936	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	497077	173232936	17921340	627	109623											
GALNTL6	442117	broad.mit.edu	37	chr4	173301167	173301167	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagtgatgcatacttgatGatcggatcaatttaaatatt	8	4	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173301167	T	T	173301167	1	4	116	0	1	0	0	0	0	0	0	0	6287	1305	45	3		3	GALNTL6	4	173301167	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	68231	173301167	17853109	628	109624											
GALNTL6	442117	broad.mit.edu	37	chr4	173730517	173730517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacttcctacctagaacacCtgaaggataaattggaagaa	7	9	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173730517	A	A	173730517	3	1	116	1	0	0	0	0	1	0	0	0	6287	680	24	2	577	2	GALNTL6	4	173730517	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	429350	173730517	17423759	629	109625											
HAND2	9464	broad.mit.edu	37	chr4	174450170	174450170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcgcggcccccccaggcCcgggggcccggcgcccggcg	19	21	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174450170	A	A	174450170	3	1	116	1	0	0	0	0	1	0	0	0	7016	623	22	2	390	2	HAND2	4	174450170	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	719653	174450170	16704106	630	109626											
ODZ3	55714	broad.mit.edu	37	chr4	183664579	183664579	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcttagaactaaggtacgtCtttcctaaatttgggctttt	8	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183664579	A	A	183664579	1	1	116	0	1	0	0	0	0	0	0	0	10931	928	32	3		3	ODZ3	4	183664579	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	9214409	183664579	7489697	631	109627											
SNX25	83891	broad.mit.edu	37	chr4	186180179	186180179	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgatgttgtgaggacttTactcactcatttctgtgacc	8	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186180179	C	C	186180179	3	2	116	1	0	0	0	0	1	0	0	0	15010	1764	61	5	206	5	SNX25	4	186180179	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	2515600	186180179	4974097	632	109628											
KLKB1	3818	broad.mit.edu	37	chr4	187178397	187178397	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtgaaatccaaaatattCtacaaaaggtaaatattcct	5	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187178397	T	T	187178397	2	4	116	1	0	0	0	0	0	0	0	1	8483	912	32	4		4	KLKB1	4	187178397	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	998218	187178397	3975879	633	109629											
TRIML1	339976	broad.mit.edu	37	chr4	189061091	189061091	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggtgcaaacagagtgcatCtctccagcgaggctgaggag	14	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189061091	A	A	189061091	3	1	116	1	0	0	0	0	1	0	0	0	16675	913	32	3	381	3	TRIML1	4	189061091	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1882694	189061091	2093185	634	109630											
SLC9A3	6550	broad.mit.edu	37	chr5	476405	476405	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgacttgaaggactccaggCgcttccgcatggtcctgtgg	13	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	476405	T	T	476405	3	4	116	1	0	0	0	0	1	0	0	0	14827	768	27	4	545	4	SLC9A3	5	476405	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08		476405	180438855	635	109631											
SLC12A7	10723	broad.mit.edu	37	chr5	1094281	1094281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttacctcgaaaagtgcCatgttcttcccttcaaagaa	6	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1094281	A	A	1094281	3	1	116	1	0	0	0	0	1	0	0	0	14501	594	21	2	3136	2	SLC12A7	5	1094281	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	617876	1094281	179820979	636	109632											
SLC6A18	348932	broad.mit.edu	37	chr5	1235800	1235800	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagagctggcagggcctgatCccctctcttgcttcctccag	11	15	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1235800	A	A	1235800	1	1	116	0	1	0	0	0	0	0	0	0	14795	870	30	3		3	SLC6A18	5	1235800	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	141519	1235800	179679460	637	109633											
ADAMTS16	170690	broad.mit.edu	37	chr5	5146295	5146295	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggggcgattacgtgtcCcatgaaatcatgcaccatca	9	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5146295	A	A	5146295	2	1	116	1	0	0	0	0	0	0	0	1	261	610	22	2		2	ADAMTS16	5	5146295	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	3910495	5146295	175768965	638	109634											
KIAA0947	23379	broad.mit.edu	37	chr5	5460556	5460556	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catattttttaaggaaacctActttggagaatacacagatt	6	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5460556	G	G	5460556	3	3	116	1	0	0	0	0	1	0	0	0	8272	391	14	5	1159	5	KIAA0947	5	5460556	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	314261	5460556	175454704	639	109635											
KIAA0947	23379	broad.mit.edu	37	chr5	5464516	5464516	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggccagaggaccccagacGtgcctctcctccagatcctt	9	16	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5464516	A	A	5464516	3	1	116	1	0	0	0	0	1	0	0	0	8272	1145	40	4	5119	4	KIAA0947	5	5464516	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3960	5464516	175450744	640	109636											
NSUN2	54888	broad.mit.edu	37	chr5	6604197	6604197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaccacctgcatttttgCtggccttataaagggaatac	8	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6604197	A	A	6604197	1	1	116	0	1	0	0	0	0	0	0	0	10773	812	28	3		3	NSUN2	5	6604197	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1139681	6604197	174311063	641	109637											
ADCY2	108	broad.mit.edu	37	chr5	7626390	7626390	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggacacctgtaattgcatCaagtcgcggatcaagttgga	11	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7626390	T	T	7626390	2	4	116	1	0	0	0	0	0	0	0	1	294	816	29	4		4	ADCY2	5	7626390	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1022193	7626390	173288870	642	109638											
ADCY2	108	broad.mit.edu	37	chr5	7784630	7784630	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtattaatagtgctttgctGtgcattgtagttaatcttct	8	5	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7784630	C	C	7784630	1	2	116	0	1	0	0	0	0	0	0	0	294	1392	48	4		4	ADCY2	5	7784630	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	158240	7784630	173130630	643	109639											
MTRR	4552	broad.mit.edu	37	chr5	7886659	7886659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagtaattgtgttttggGgagtgtgtaaaacattttat	10	3	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7886659	T	T	7886659	1	4	116	0	1	0	0	0	0	0	0	0	10055	1247	43	2		2	MTRR	5	7886659	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	102029	7886659	173028601	644	109640											
MARCH6	10299	broad.mit.edu	37	chr5	10403613	10403613	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggctagtgggaatggtatAtgtcttctactttgcctcct	10	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10403613	G	G	10403613	3	3	116	1	0	0	0	0	1	0	0	0	9397	449	16	5	1350	5	MARCH6	5	10403613	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	2516954	10403613	170511647	645	109641											
CTNND2	1501	broad.mit.edu	37	chr5	11346597	11346597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagggacaatactgcagCtgtcggtaggggtccgcgta	15	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11346597	A	A	11346597	3	1	116	1	0	0	0	0	1	0	0	0	4054	796	28	3	2218	3	CTNND2	5	11346597	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	942984	11346597	169568663	646	109642											
DNAH5	1767	broad.mit.edu	37	chr5	13708040	13708040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgccctagcagagaacCtgattcgtgggatttgctaa	10	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13708040	A	A	13708040	1	1	116	0	1	0	0	0	0	0	0	0	4644	696	24	2		2	DNAH5	5	13708040	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2361443	13708040	167207220	647	109643											
DNAH5	1767	broad.mit.edu	37	chr5	13751281	13751281	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaggtacgggcacttatcTcaggggtgtaggctgggtta	17	6	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13751281	A	A	13751281	3	1	116	1	0	0	0	0	1	0	0	0	4644	1551	54	5	2817	5	DNAH5	5	13751281	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	43241	13751281	167163979	648	109644											
FBXL7	23194	broad.mit.edu	37	chr5	15927930	15927930	+	Intron	SNP	G	T	T													aagaaaagaaagaaaccagtGcttttgctgcctccctgggg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15927930	T	T	15927930	1	4	116	0	1	0	0	0	0	0	0	0	5781	1334	46	3		3	FBXL7	5	15927930	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2176649	15927930	164987330	649	109645	473	2									
FBXL7	23194	broad.mit.edu	37	chr5	15927936	15927936	+	Intron	SNP	G	T	T													agaaagaaaccagtgcttttGctgcctccctggggctctgc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15927936	T	T	15927936	1	4	116	0	1	0	0	0	0	0	0	0	5781	1334	46	3		3	FBXL7	5	15927936	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6	15927936	164987324	650	109646	473	2									
CDH18	1016	broad.mit.edu	37	chr5	19721647	19721647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatttgaacacagaaaatGggtatgctgaaatagctatg	9	4	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19721647	T	T	19721647	1	4	116	0	1	0	0	0	0	0	0	0	3133	1363	47	2		2	CDH18	5	19721647	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3793711	19721647	161193613	651	109647											
CDH18	1016	broad.mit.edu	37	chr5	19838945	19838945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatacccatccccttttggGacgatgatggacttcggttt	9	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19838945	T	T	19838945	3	4	116	1	0	0	0	0	1	0	0	0	3133	1174	41	3	2265	3	CDH18	5	19838945	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	117298	19838945	161076315	652	109648											
CDH12	1010	broad.mit.edu	37	chr5	21884018	21884018	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggcattgttttgggagGgggttttgccctccttcgat	15	7	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21884018	A	A	21884018	1	1	116	0	1	0	0	0	0	0	0	0	3128	1247	43	4		4	CDH12	5	21884018	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2045073	21884018	159031242	653	109649											
CDH10	1008	broad.mit.edu	37	chr5	24537671	24537671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctccctatcaattcgcCttgtggcatgaatatcacct	5	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24537671	A	A	24537671	3	1	116	1	0	0	0	0	1	0	0	0	3126	681	24	2	2062	2	CDH10	5	24537671	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2653653	24537671	156377589	654	109650											
CDH10	1008	broad.mit.edu	37	chr5	24593550	24593550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctggagagcagaaatgtGgcaggcatacccagaataga	12	7	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24593550	T	T	24593550	3	4	116	1	0	0	0	0	1	0	0	0	3126	1348	47	2	2360	2	CDH10	5	24593550	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	55879	24593550	156321710	655	109651											
CDH9	1007	broad.mit.edu	37	chr5	26881641	26881641	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgccttcatcgttgtaGgtcacaatgttgtcccggac	10	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881641	T	T	26881641	2	4	116	1	0	0	0	0	0	0	0	1	3147	987	35	2		2	CDH9	5	26881641	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	2288091	26881641	154033619	656	109652											
CDH6	1004	broad.mit.edu	37	chr5	31322878	31322878	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgacattaattgggcAgcaaattaacttttccttcc	5	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31322878	T	T	31322878	1	4	116	0	1	0	0	0	0	0	0	0	3144	203	7	5		5	CDH6	5	31322878	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	4441237	31322878	149592382	657	109653											
CDH6	1004	broad.mit.edu	37	chr5	31323321	31323321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcagtgaccacggatgCagatcaagactatgattacc	11	9	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323321	A	A	31323321	3	1	116	1	0	0	0	0	1	0	0	0	3144	710	25	3	2321	3	CDH6	5	31323321	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	443	31323321	149591939	658	109654											
CDH6	1004	broad.mit.edu	37	chr5	31323516	31323516	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcttctctgttctacccGttccaaaagccaatggctgc	8	13	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323516	A	A	31323516	1	1	116	0	1	0	0	0	0	0	0	0	3144	1160	40	4		4	CDH6	5	31323516	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	195	31323516	149591744	659	109655											
C5orf22	55322	broad.mit.edu	37	chr5	31541486	31541486	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatgatgaagaaacggtAcagagatgggcttcaaaccc	13	7	1	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31541486	G	G	31541486	2	3	116	1	0	0	0	0	0	0	0	1	2308	378	14	5		5	C5orf22	5	31541486	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	217970	31541486	149373774	660	109656											
PDZD2	23037	broad.mit.edu	37	chr5	32059401	32059401	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggctctggaaaacagtcctCctggcatctacattcacagc	8	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32059401	T	T	32059401	3	4	116	1	0	0	0	0	1	0	0	0	11795	855	30	4	2303	4	PDZD2	5	32059401	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	517915	32059401	148855859	661	109657											
PDZD2	23037	broad.mit.edu	37	chr5	32077526	32077526	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcttacggtgcagaaagcCtgaaagttatttcaagtggc	10	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32077526	T	T	32077526	1	4	116	0	1	0	0	0	0	0	0	0	11795	696	24	4		4	PDZD2	5	32077526	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	18125	32077526	148837734	662	109658											
NPR3	4883	broad.mit.edu	37	chr5	32781025	32781025	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgtctccaatgcagcttcCaaataaaaatgagttgaaaa	7	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32781025	G	G	32781025	1	3	116	0	1	0	0	0	0	0	0	0	10691	609	21	4		4	NPR3	5	32781025	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	703499	32781025	148134235	663	109659											
ADAMTS12	81792	broad.mit.edu	37	chr5	33588546	33588546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctatgaatggaaaataaGtagtggacacaggaaaggca	11	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33588546	T	T	33588546	1	4	116	0	1	0	0	0	0	0	0	0	257	1044	36	3		3	ADAMTS12	5	33588546	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	807521	33588546	147326714	664	109660											
ADAMTS12	81792	broad.mit.edu	37	chr5	33616054	33616054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttccactggataataaacCctccattcaggtaatatttt	5	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33616054	A	A	33616054	3	1	116	1	0	0	0	0	1	0	0	0	257	623	22	2	2557	2	ADAMTS12	5	33616054	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	27508	33616054	147299206	665	109661											
C1QTNF3	114899	broad.mit.edu	37	chr5	34020750	34020750	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgttggtggtccccatggaGagcgccattgcccattcgca	13	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34020750	C	C	34020750	3	2	116	1	0	0	0	0	1	0	0	0	1984	942	33	4	65	4	C1QTNF3	5	34020750	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	404696	34020750	146894510	666	109662											
SPEF2	79925	broad.mit.edu	37	chr5	35670312	35670312	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacttgctagataccaatGattatgaagaatataaggta	10	4	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35670312	T	T	35670312	3	4	116	1	0	0	0	0	1	0	0	0	15153	1290	45	3	1545	3	SPEF2	5	35670312	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1649562	35670312	145244948	667	109663											
LMBRD2	92255	broad.mit.edu	37	chr5	36117773	36117773	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactagaagaaatacatggaGaaaatagttaaggattatac	8	3	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36117773	C	C	36117773	1	2	116	0	1	0	0	0	0	0	0	0	8917	957	33	4		4	LMBRD2	5	36117773	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	447461	36117773	144797487	668	109664											
LIFR	3977	broad.mit.edu	37	chr5	38496683	38496683	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatttttccattagcttcAttaatgggtaaaggctatga	8	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38496683	G	G	38496683	2	3	116	1	0	0	0	0	0	0	0	1	8852	214	8	5		5	LIFR	5	38496683	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	2378910	38496683	142418577	669	109665											
FYB	2533	broad.mit.edu	37	chr5	39169563	39169563	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcacagaagagtgccttcaCcattgacaatttcagacata	6	10	3	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39169563	G	G	39169563	1	3	116	0	1	0	0	0	0	0	0	0	6184	522	18	4		4	FYB	5	39169563	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	672880	39169563	141745697	670	109666											
HEATR7B2	133558	broad.mit.edu	37	chr5	41010084	41010084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatccatgtgaaagctgGctatctgggagatggcttct	12	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41010084	T	T	41010084	3	4	116	1	0	0	0	0	1	0	0	0	7102	1203	42	3	1572	3	HEATR7B2	5	41010084	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1840521	41010084	139905176	671	109667											
PLCXD3	345557	broad.mit.edu	37	chr5	41313851	41313851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttctgcgtgcggacccaCtgcatcatggcaggaagagc	14	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41313851	A	A	41313851	3	1	116	1	0	0	0	0	1	0	0	0	12138	564	20	3	135	3	PLCXD3	5	41313851	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	303767	41313851	139601409	672	109668											
C5orf28	64417	broad.mit.edu	37	chr5	43446492	43446492	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccacaaaccatgacgaatCccatctcggatatgatgtga	7	11	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43446492	A	A	43446492	2	1	116	1	0	0	0	0	0	0	0	1	2312	842	30	3		3	C5orf28	5	43446492	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	2132641	43446492	137468768	673	109669											
ESM1	11082	broad.mit.edu	37	chr5	54275327	54275327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagacaacacagttttgCtttatttttgttttacatgg	6	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54275327	A	A	54275327	1	1	116	0	1	0	0	0	0	0	0	0	5294	812	28	3		3	ESM1	5	54275327	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	10828835	54275327	126639933	674	109670											
CDC20B	166979	broad.mit.edu	37	chr5	54423141	54423141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actactgacaaatgaccaagCatatttctcagccgcttttt	5	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54423141	A	A	54423141	3	1	116	1	0	0	0	0	1	0	0	0	3090	710	25	3	646	3	CDC20B	5	54423141	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	147814	54423141	126492119	675	109671											
IL31RA	133396	broad.mit.edu	37	chr5	55168222	55168222	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataccattgaggtggaagctGaaaatggagatggtgtaatt	13	3	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55168222	A	A	55168222	3	1	116	1	0	0	0	0	1	0	0	0	7761	1291	45	4	411	4	IL31RA	5	55168222	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	745081	55168222	125747038	676	109672											
PLK2	10769	broad.mit.edu	37	chr5	57755824	57755824	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgcccgctgccaccccCtaggcgcggtcacacgtccg	11	20	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57755824	A	A	57755824	1	1	116	1	0	0	0	0	0	0	0	0	12191	696	24	2		2	PLK2	5	57755824	Translation_Start_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	2587602	57755824	123159436	677	109673											
ADAMTS6	11174	broad.mit.edu	37	chr5	64492849	64492849	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttctttcccttacttacTcaggtgggcagggctcagtg	10	11	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64492849	A	A	64492849	3	1	116	1	0	0	0	0	1	0	0	0	270	1565	54	5	668	5	ADAMTS6	5	64492849	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	6737025	64492849	116422411	678	109674											
MAST4	375449	broad.mit.edu	37	chr5	66460973	66460973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgagcgctctgctgcgaGggctgacacatgcagagagc	15	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66460973	T	T	66460973	3	4	116	1	0	0	0	0	1	0	0	0	9419	1000	35	2	6210	2	MAST4	5	66460973	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1968124	66460973	114454287	679	109675											
NAIP	4671	broad.mit.edu	37	chr5	70308462	70308462	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacagcagaagcactgaatcCcagattttaccccagtgaag	8	11	0	4	rs147757754		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70308462	G	G	70308462	3	3	116	1	0	0	0	0	1	0	0	0	10241	623	22	4	3986	4	NAIP	5	70308462	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3847489	70308462	110606798	680	109676											
RGNEF	64283	broad.mit.edu	37	chr5	73136209	73136209	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcggcctcctaccacgcctGgccagaagtttttaaattgg	9	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73136209	C	C	73136209	1	2	116	0	1	0	0	0	0	0	0	0	13391	1363	47	4		4	RGNEF	5	73136209	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2827747	73136209	107779051	681	109677											
GFM2	84340	broad.mit.edu	37	chr5	74063022	74063022	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaaaagcggaaaacagagGctcggaaccgctgcgtggtt	14	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74063022	A	A	74063022	1	1	116	0	1	0	0	0	0	0	0	0	6406	1218	42	4		4	GFM2	5	74063022	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	926813	74063022	106852238	682	109678											
FAM169A	26049	broad.mit.edu	37	chr5	74095254	74095254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgattcgctccacagtcCtcagcttggattggcatccc	9	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74095254	A	A	74095254	1	1	116	0	1	0	0	0	0	0	0	0	5532	696	24	2		2	FAM169A	5	74095254	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	32232	74095254	106820006	683	109679											
SV2C	22987	broad.mit.edu	37	chr5	75490762	75490762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagcatagtgtacctcgGgatgatggtgggggcgttct	17	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75490762	T	T	75490762	3	4	116	1	0	0	0	0	1	0	0	0	15537	1232	43	2	605	2	SV2C	5	75490762	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1395508	75490762	105424498	684	109680											
SV2C	22987	broad.mit.edu	37	chr5	75537847	75537847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttatcaaaaatgcacacaCttcacttggcatctccagca	5	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75537847	A	A	75537847	1	1	116	0	1	0	0	0	0	0	0	0	15537	580	20	3		3	SV2C	5	75537847	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	47085	75537847	105377413	685	109681											
WDR41	55255	broad.mit.edu	37	chr5	76749729	76749729	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccaccagaaagccaaacatCtagtctctgaagaacagtta	6	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76749729	G	G	76749729	3	3	116	1	0	0	0	0	1	0	0	0	17421	913	32	4	975	4	WDR41	5	76749729	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1211882	76749729	104165531	686	109682											
RASGRF2	5924	broad.mit.edu	37	chr5	80382877	80382877	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcgtgacgggtgcggtgCccgaaggacccccccacggc	16	16	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80382877	T	T	80382877	1	4	116	0	1	0	0	0	0	0	0	0	13181	754	26	4		4	RASGRF2	5	80382877	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3633148	80382877	100532383	687	109683											
ATP6AP1L	92270	broad.mit.edu	37	chr5	81606107	81606107	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttattcattccacatgtgcGaagcaagggcttgctatatg	9	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81606107	T	T	81606107	1	4	116	0	1	0	0	0	0	0	0	0	1170	1073	37	3		3	ATP6AP1L	5	81606107	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1223230	81606107	99309153	688	109684											
VCAN	1462	broad.mit.edu	37	chr5	82836773	82836773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagctacactcaggcaacaCatgatgaatcaatgacttat	6	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82836773	A	A	82836773	3	1	116	1	0	0	0	0	1	0	0	0	17265	478	17	3	7977	3	VCAN	5	82836773	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1230666	82836773	98078487	689	109685											
VCAN	1462	broad.mit.edu	37	chr5	82837228	82837228	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgtgatggaaggatcCaatcccccatattacactga	8	11	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82837228	A	A	82837228	2	1	116	1	0	0	0	0	0	0	0	1	17265	581	21	2		2	VCAN	5	82837228	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	455	82837228	98078032	690	109686											
VCAN	1462	broad.mit.edu	37	chr5	82837640	82837640	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaaccgatggtcaaGtttctggagaagcaatcaag	9	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82837640	C	C	82837640	3	2	116	1	0	0	0	0	1	0	0	0	17265	1029	36	4	8844	4	VCAN	5	82837640	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	412	82837640	98077620	691	109687											
VCAN	1462	broad.mit.edu	37	chr5	82849281	82849281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagctgaacgggaatgcCgtctgcagggtgcccatctc	13	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82849281	A	A	82849281	3	1	116	1	0	0	0	0	1	0	0	0	17265	652	23	1	9630	1	VCAN	5	82849281	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	11641	82849281	98065979	692	109688											
RHOBTB3	22836	broad.mit.edu	37	chr5	95099121	95099121	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagaaaaattaaagcactAaaaaaagggaatgttgtatt	7	2	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95099121	G	G	95099121	1	3	116	0	1	0	0	0	0	0	0	0	13444	377	13	5		5	RHOBTB3	5	95099121	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	12249840	95099121	85816139	693	109689											
LIX1	167410	broad.mit.edu	37	chr5	96478146	96478146	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaataggatgtgacttgacGtttaggactattttctaaaa	8	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96478146	T	T	96478146	1	4	116	0	1	0	0	0	0	0	0	0	8905	1160	40	3		3	LIX1	5	96478146	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1379025	96478146	84437114	694	109690											
PPIP5K2	23262	broad.mit.edu	37	chr5	102503828	102503828	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatgctacgtagatggtcCaagttagagaaagactttaa	9	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102503828	A	A	102503828	2	1	116	1	0	0	0	0	0	0	0	1	12434	581	21	2		2	PPIP5K2	5	102503828	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	6025682	102503828	78411432	695	109691											
NUDT12	83594	broad.mit.edu	37	chr5	102886481	102886481	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtgacactctcaagagTactgaataatctctaatatc	6	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102886481	A	A	102886481	1	1	116	0	1	0	0	0	0	0	0	0	10823	1653	57	5		5	NUDT12	5	102886481	3'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	382653	102886481	78028779	696	109692											
PGGT1B	5229	broad.mit.edu	37	chr5	114598499	114598499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcccgtaagaaatccagcCgctctccctcaccgctccct	6	19	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114598499	A	A	114598499	3	1	116	1	0	0	0	0	1	0	0	0	11884	652	23	1	1119	1	PGGT1B	5	114598499	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	11712018	114598499	66316761	697	109693											
HSD17B4	3295	broad.mit.edu	37	chr5	118814643	118814643	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctcttgcaattgaaggcagGaaaagcaacattcattgtaa	8	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118814643	A	A	118814643	2	1	116	1	0	0	0	0	0	0	0	1	7453	1165	41	4		4	HSD17B4	5	118814643	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	4216144	118814643	62100617	698	109694											
FTMT	94033	broad.mit.edu	37	chr5	121187716	121187716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccttcgctggcgtctctgCgcccggtgcgctgctgcttc	13	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121187716	A	A	121187716	3	1	116	1	0	0	0	0	1	0	0	0	6145	768	27	3	60	3	FTMT	5	121187716	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2373073	121187716	59727544	699	109695											
CTXN3	613212	broad.mit.edu	37	chr5	126993374	126993374	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttccggattcttttggAtccatatcgaagcatgccaa	9	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126993374	G	G	126993374	3	3	116	1	0	0	0	0	1	0	0	0	4083	333	12	5	163	5	CTXN3	5	126993374	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	5805658	126993374	53921886	700	109696											
SLC12A2	6558	broad.mit.edu	37	chr5	127507508	127507508	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgttagaaaattatattctCacaaactgggctcttcgtta	6	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127507508	T	T	127507508	1	4	116	0	1	0	0	0	0	0	0	0	14496	841	29	4		4	SLC12A2	5	127507508	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	514134	127507508	53407752	701	109697											
FBN2	2201	broad.mit.edu	37	chr5	127710262	127710262	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccactgtatagaaatatctCtgtcagtttttcaaagatca	5	8	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127710262	T	T	127710262	1	4	116	0	1	0	0	0	0	0	0	0	5760	928	32	4		4	FBN2	5	127710262	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	202754	127710262	53204998	702	109698											
FBN2	2201	broad.mit.edu	37	chr5	127730962	127730962	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagaaacacatgcctgttcTctgatctgtgcatgtataaa	8	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127730962	A	A	127730962	4	1	116	1	0	0	0	0	0	1	0	0	5760	1559	54	5	7882	5	FBN2	5	127730962	Nonsense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	20700	127730962	53184298	703	109699											
CHSY3	337876	broad.mit.edu	37	chr5	129521374	129521374	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaacttggaccctaagcagTataagatgtgcttaggatcc	9	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129521374	C	C	129521374	3	2	116	1	0	0	0	0	1	0	0	0	3444	1638	57	5	2549	5	CHSY3	5	129521374	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	1790412	129521374	51393886	704	109700											
IRF1	3659	broad.mit.edu	37	chr5	131821541	131821542	+	Intron	INS	-	CACACACAC	CACACACAC													cacacacacacacacacacaINSccctcccggtggacctatct					rs151015807	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CACACACAC	131821542	CACACACAC	CACACACAC	131821541	6	5	116	0	1	1	1	0	0	0	0	0	7897	174	6	0		0	IRF1	5	131821541	Intron	INS	-	TCGA-44-3918-01A-01D-1105-08	2300167	131821541	49093719	705	109701											
PITX1	5307	broad.mit.edu	37	chr5	134364843	134364843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtggagagcggcgctgGcgccaggctcttggcggccc	18	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134364843	T	T	134364843	3	4	116	1	0	0	0	0	1	0	0	0	12049	1203	42	3	377	3	PITX1	5	134364843	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2543302	134364843	46550417	706	109702											
SPOCK1	6695	broad.mit.edu	37	chr5	136320810	136320811	+	Intron	DNP	GG	AA	AA													aattagttgtttaaatgagtGgcaagaaattgtacttaccc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	136320811	AA	AA	136320810	1	1	116	0	1	0	0	0	0	0	0	0	15197	1363	47	4		4	SPOCK1	5	136320810	Intron	DNP	GG	TCGA-44-3918-01A-01D-1105-08	1955967	136320810	44594450	707	109703											
PKD2L2	27039	broad.mit.edu	37	chr5	137257250	137257250	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgctagatatcctcttagaGacattagtaactcccatcag	6	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137257250	C	C	137257250	1	2	116	0	1	0	0	0	0	0	0	0	12063	957	33	4		4	PKD2L2	5	137257250	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	936440	137257250	43658010	708	109704											
FAM13B	51306	broad.mit.edu	37	chr5	137354124	137354124	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaaatccacctcttctccGctgtcgtatctctgccgaag	6	16	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137354124	A	A	137354124	2	1	116	1	0	0	0	0	0	0	0	1	5499	1078	38	4		4	FAM13B	5	137354124	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	96874	137354124	43561136	709	109705											
KDM3B	51780	broad.mit.edu	37	chr5	137726954	137726954	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actacttcactactgtttcaGagagtttggctgatgattct	8	8	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137726954	C	C	137726954	3	2	116	1	0	0	0	0	1	0	0	0	8197	943	33	4	1663	4	KDM3B	5	137726954	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	372830	137726954	43188306	710	109706											
KDM3B	51780	broad.mit.edu	37	chr5	137766189	137766189	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttttcttgctaatctaccAagagatttaagtagctggat	8	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137766189	T	T	137766189	1	4	116	0	1	0	0	0	0	0	0	0	8197	145	5	5		5	KDM3B	5	137766189	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	39235	137766189	43149071	711	109707											
HARS2	23438	broad.mit.edu	37	chr5	140075532	140075532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacccttaagcctgcaactGtaggactttcctagtaaagc	7	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140075532	T	T	140075532	1	4	116	0	1	0	0	0	0	0	0	0	7026	1392	48	3		3	HARS2	5	140075532	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2309343	140075532	40839728	712	109708											
HARS2	23438	broad.mit.edu	37	chr5	140076891	140076891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggtgggcgctatgatgGgctggtgggcatgtttgacc	18	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140076891	T	T	140076891	3	4	116	1	0	0	0	0	1	0	0	0	7026	1232	43	2	1135	2	HARS2	5	140076891	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1359	140076891	40838369	713	109709											
PCDHA6	56142	broad.mit.edu	37	chr5	140209546	140209546	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgctcgcttcccgtttcgcGtggggctgtacacgggcgag	16	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140209546	A	A	140209546	3	1	116	1	0	0	0	0	1	0	0	0	11622	1145	40	4	1872	4	PCDHA6	5	140209546	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	132655	140209546	40705714	714	109710											
PCDHA12	56137	broad.mit.edu	37	chr5	140255544	140255544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcttctgatgcggatatcGgcgtaaactctcttttgacc	10	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140255544	T	T	140255544	3	4	116	1	0	0	0	0	1	0	0	0	11616	1116	39	1	489	1	PCDHA12	5	140255544	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	45998	140255544	40659716	715	109711											
PCDHA12	56137	broad.mit.edu	37	chr5	140256217	140256217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaatggacaggtcatctGctcactgacacctcatgttc	8	13	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140256217	T	T	140256217	3	4	116	1	0	0	0	0	1	0	0	0	11616	1319	46	3	1162	3	PCDHA12	5	140256217	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	673	140256217	40659043	716	109712											
PCDHB3	56132	broad.mit.edu	37	chr5	140481294	140481294	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccttgtcttcagtaaacaGccctattcctgagaactcgg	8	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140481294	C	C	140481294	3	2	116	1	0	0	0	0	1	0	0	0	11637	971	34	4	1063	4	PCDHB3	5	140481294	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	225077	140481294	40433966	717	109713											
PCDHB3	56132	broad.mit.edu	37	chr5	140481566	140481566	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgctggtctccgacgtcAatgacaacgcccccgccttc	9	18	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140481566	C	C	140481566	3	2	116	1	0	0	0	0	1	0	0	0	11637	130	5	5	1335	5	PCDHB3	5	140481566	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	272	140481566	40433694	718	109714											
PCDHB3	56132	broad.mit.edu	37	chr5	140481802	140481802	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcgctggactacgaggcCctgcaggcgttcgagttccg	15	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481802	A	A	140481802	2	1	116	1	0	0	0	0	0	0	0	1	11637	610	22	2		2	PCDHB3	5	140481802	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	236	140481802	40433458	719	109715											
PCDHB5	26167	broad.mit.edu	37	chr5	140516349	140516349	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctggtctccgacgtcaatGacaacgcccccgccttcacc	7	19	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140516349	T	T	140516349	3	4	116	1	0	0	0	0	1	0	0	0	11639	1290	45	3	1335	3	PCDHB5	5	140516349	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	34547	140516349	40398911	720	109716											
PCDHB16	57717	broad.mit.edu	37	chr5	140563749	140563749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccacagaccgcggctccCcggctttgagcagcgaggcg	15	16	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140563749	A	A	140563749	3	1	116	1	0	0	0	0	1	0	0	0	11635	623	22	2	1617	2	PCDHB16	5	140563749	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	47400	140563749	40351511	721	109717											
PCDHB12	56124	broad.mit.edu	37	chr5	140590444	140590444	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcctccgcgctcggccacCgccacgctgcacgtgctcct	11	20	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140590444	T	T	140590444	2	4	116	1	0	0	0	0	0	0	0	1	11631	639	23	4		4	PCDHB12	5	140590444	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	26695	140590444	40324816	722	109718											
PCDHB12	56124	broad.mit.edu	37	chr5	140590632	140590632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctgtgcaggaggagcaGggcggccccggtcggtcgct	20	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140590632	T	T	140590632	3	4	116	1	0	0	0	0	1	0	0	0	11631	1000	35	2	2155	2	PCDHB12	5	140590632	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	188	140590632	40324628	723	109719											
PCDHB13	56123	broad.mit.edu	37	chr5	140595759	140595759	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggccgacttgctcaccgtCtacctggtggtggcgttggc	14	13	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140595759	A	A	140595759	2	1	116	1	0	0	0	0	0	0	0	1	11632	900	32	3		3	PCDHB13	5	140595759	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	5127	140595759	40319501	724	109720											
PCDHB15	56121	broad.mit.edu	37	chr5	140627002	140627002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggctgttcggcgtgtgggCgcacaatggcgaggtgcgca	19	10	0	0	rs17844634		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140627002	A	A	140627002	3	1	116	1	0	0	0	0	1	0	0	0	11634	768	27	3	1858	3	PCDHB15	5	140627002	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	31243	140627002	40288258	725	109721											
PCDHGA1	56114	broad.mit.edu	37	chr5	140710390	140710390	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggttccttcgtaggcAacatcgccaaggacctaggg	11	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140710390	T	T	140710390	3	4	116	1	0	0	0	0	1	0	0	0	11644	130	5	5	141	5	PCDHGA1	5	140710390	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	83388	140710390	40204870	726	109722											
PCDHGA4	56111	broad.mit.edu	37	chr5	140735713	140735713	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaggactctggattctatGacatagatgtagaagcccat	10	7	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140735713	A	A	140735713	3	1	116	1	0	0	0	0	1	0	0	0	11650	1290	45	4	948	4	PCDHGA4	5	140735713	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	25323	140735713	40179547	727	109723											
PCDHGA5	56110	broad.mit.edu	37	chr5	140745823	140745823	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacgcgctcaagcagagcctCgtggtggccgtcgaagacca	14	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140745823	G	G	140745823	2	3	116	1	0	0	0	0	0	0	0	1	11651	871	31	4		4	PCDHGA5	5	140745823	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	10110	140745823	40169437	728	109724											
PCDHGA11	56105	broad.mit.edu	37	chr5	140801578	140801579	+	Frame_Shift_Ins	INS	-	T	T													catcagctccggaactcgggINStgctgatggttaatgcaacg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140801579	T	T	140801578	7	5	116	1	0	1	1	0	0	0	0	0	11646	1261	44	0	786	0	PCDHGA11	5	140801578	Frame_Shift_Ins	INS	-	TCGA-44-3918-01A-01D-1105-08	55755	140801578	40113682	729	109725											
PCDHGA12	26025	broad.mit.edu	37	chr5	140812312	140812312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactgtcacgctcaccgtGgccgtggccgacagcatccc	11	18	2	0	rs138883931	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140812312	T	T	140812312	2	4	116	1	0	0	0	0	0	0	0	1	11647	1335	47	2		2	PCDHGA12	5	140812312	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	10734	140812312	40102948	730	109726											
SPRY4	81848	broad.mit.edu	37	chr5	141693977	141693977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccatgaaggaccagcgggCgcagcagttggagcgggagc	17	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141693977	A	A	141693977	3	1	116	1	0	0	0	0	1	0	0	0	15226	768	27	3	206	3	SPRY4	5	141693977	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	881665	141693977	39221283	731	109727											
DPYSL3	1809	broad.mit.edu	37	chr5	146788307	146788307	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacctcttctggcctgctcAgtacatggccttctgggcca	9	14	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146788307	T	T	146788307	3	4	116	1	0	0	0	0	1	0	0	0	4788	188	7	5	1070	5	DPYSL3	5	146788307	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	5094330	146788307	34126953	732	109728											
SCGB3A2	117156	broad.mit.edu	37	chr5	147260905	147260905	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttttcaatggaagtaagatGagtggatctggaatggagct	14	3	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147260905	A	A	147260905	1	1	116	0	1	0	0	0	0	0	0	0	14014	1305	45	4		4	SCGB3A2	5	147260905	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	472598	147260905	33654355	733	109729											
SPINK13	153218	broad.mit.edu	37	chr5	147661762	147661762	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctcaaatggccacactttCcagaatgagtgtttcttttg	8	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147661762	G	G	147661762	3	3	116	1	0	0	0	0	1	0	0	0	15176	854	30	4	214	4	SPINK13	5	147661762	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	400857	147661762	33253498	734	109730											
SH3TC2	79628	broad.mit.edu	37	chr5	148384392	148384392	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgctcctaatggtgtccTgaagctcctcatcacccagc	8	16	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148384392	A	A	148384392	3	1	116	1	0	0	0	0	1	0	0	0	14375	1580	55	5	121	5	SH3TC2	5	148384392	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	722630	148384392	32530868	735	109731											
SH3TC2	79628	broad.mit.edu	37	chr5	148427439	148427439	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcaccttaaacagcatgcGcacctcctggtcctcattct	6	16	3	0	rs142488510	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148427439	A	A	148427439	3	1	116	1	0	0	0	0	1	0	0	0	14375	1087	38	4	3661	4	SH3TC2	5	148427439	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	43047	148427439	32487821	736	109732											
PDE6A	5145	broad.mit.edu	37	chr5	149283305	149283305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtgattaggcctgagaGggtgcccagtgaagcactgt	16	7	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149283305	T	T	149283305	1	4	116	0	1	0	0	0	0	0	0	0	11739	1015	35	2		2	PDE6A	5	149283305	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	855866	149283305	31631955	737	109733											
CSF1R	1436	broad.mit.edu	37	chr5	149437175	149437175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacataggagagagggttGgggggcagaggtcactcatc	16	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149437175	T	T	149437175	1	4	116	0	1	0	0	0	0	0	0	0	3966	1363	47	2		2	CSF1R	5	149437175	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	153870	149437175	31478085	738	109734											
PDGFRB	5159	broad.mit.edu	37	chr5	149514257	149514257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaactgtaaagggctattcCtctgtggagggttatacttg	11	6	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149514257	A	A	149514257	1	1	116	0	1	0	0	0	0	0	0	0	11756	696	24	2		2	PDGFRB	5	149514257	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	77082	149514257	31401003	739	109735											
TNIP1	10318	broad.mit.edu	37	chr5	150422394	150422394	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccccaaggttcaaagctgcTaaagaggcagcgagatgaag	12	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150422394	A	A	150422394	1	1	116	0	1	0	0	0	0	0	0	0	16437	1537	53	5		5	TNIP1	5	150422394	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	908137	150422394	30492866	740	109736											
SLC36A1	206358	broad.mit.edu	37	chr5	150856211	150856211	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccactcatcctgtacctgGgcatggtcatcgtcaccatc	7	16	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150856211	C	C	150856211	3	2	116	1	0	0	0	0	1	0	0	0	14707	1232	43	4	913	4	SLC36A1	5	150856211	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	433817	150856211	30059049	741	109737											
FAT2	2196	broad.mit.edu	37	chr5	150905354	150905354	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaagctgataccattccTgagccctcctgcttaggccc	8	15	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150905354	A	A	150905354	3	1	116	1	0	0	0	0	1	0	0	0	5747	1580	55	5	2596	5	FAT2	5	150905354	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	49143	150905354	30009906	742	109738											
GLRA1	2741	broad.mit.edu	37	chr5	151229710	151229710	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggcttcccaggaccccagGgtccatattactgcagtgtg	11	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151229710	C	C	151229710	1	2	116	0	1	0	0	0	0	0	0	0	6518	1247	43	4		4	GLRA1	5	151229710	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	324356	151229710	29685550	743	109739											
FAM114A2	10827	broad.mit.edu	37	chr5	153381950	153381950	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gattgcaaacgcatggatatCctggatggaaaaacaaaaca	9	7	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153381950	G	G	153381950	3	3	116	1	0	0	0	0	1	0	0	0	5450	869	30	4	416	4	FAM114A2	5	153381950	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2152240	153381950	27533310	744	109740											
GALNT10	55568	broad.mit.edu	37	chr5	153756064	153756064	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagggaggcaaactgcaatGagccagtgccagtggccccc	15	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153756064	T	T	153756064	1	4	116	0	1	0	0	0	0	0	0	0	6270	1305	45	3		3	GALNT10	5	153756064	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	374114	153756064	27159196	745	109741											
GEMIN5	25929	broad.mit.edu	37	chr5	154306888	154306888	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttgaaaaagccctctcatCccacccaagttgtaaactgc	5	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154306888	A	A	154306888	1	1	116	0	1	0	0	0	0	0	0	0	6395	870	30	3		3	GEMIN5	5	154306888	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	550824	154306888	26608372	746	109742											
KIF4B	285643	broad.mit.edu	37	chr5	154396417	154396417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgatcctcctccaggtaGccagcagacagaaacatctt	7	13	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154396417	T	T	154396417	3	4	116	1	0	0	0	0	1	0	0	0	8374	971	34	3	3000	3	KIF4B	5	154396417	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	89529	154396417	26518843	747	109743											
TIMD4	91937	broad.mit.edu	37	chr5	156346473	156346474	+	Missense_Mutation	DNP	GG	AA	AA													catgctactgcgttgttagaGggtaaaaaggccgtcttcgt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	156346474	AA	AA	156346473	3	1	116	1	0	0	0	0	1	0	0	0	16026	1000	35	4	8	4	TIMD4	5	156346473	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	1950056	156346473	24568787	748	109744											
HAVCR1	26762	broad.mit.edu	37	chr5	156459760	156459760	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcattaaagtggactgtcagGatccaaggtatgcgatggag	13	6	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156459760	T	T	156459760	1	4	116	0	1	0	0	0	0	0	0	0	7039	1189	41	3		3	HAVCR1	5	156459760	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	113287	156459760	24455500	749	109745											
HAVCR1	26762	broad.mit.edu	37	chr5	156479505	156479505	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcgttgaaacagtcattgtCgtcagaacagtcgttgtcgt	11	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156479505	A	A	156479505	2	1	116	1	0	0	0	0	0	0	0	1	7039	871	31	3		3	HAVCR1	5	156479505	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	19745	156479505	24435755	750	109746											
NIPAL4	348938	broad.mit.edu	37	chr5	156895765	156895765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaactttggagcctacGcatttgcacctgcaacagtc	8	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156895765	T	T	156895765	3	4	116	1	0	0	0	0	1	0	0	0	10522	1087	38	3	570	3	NIPAL4	5	156895765	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	416260	156895765	24019495	751	109747											
THG1L	54974	broad.mit.edu	37	chr5	157164919	157164919	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcttgcagcagacaagaatGagattttgttttctgaattc	8	7	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157164919	C	C	157164919	3	2	116	1	0	0	0	0	1	0	0	0	15984	1291	45	4	670	4	THG1L	5	157164919	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	269154	157164919	23750341	752	109748											
EBF1	1879	broad.mit.edu	37	chr5	158500387	158500387	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaataagaatccagtgaaAgaagagtggtccctacctgt	11	7	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158500387	T	T	158500387	1	4	116	0	1	0	0	0	0	0	0	0	4920	87	3	5		5	EBF1	5	158500387	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1335468	158500387	22414873	753	109749											
ATP10B	23120	broad.mit.edu	37	chr5	160029653	160029653	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagtggccatgcacgagCagcaacttcttgagatgctt	10	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160029653	A	A	160029653	2	1	116	1	0	0	0	0	0	0	0	1	1121	697	25	3		3	ATP10B	5	160029653	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1529266	160029653	20885607	754	109750											
ATP10B	23120	broad.mit.edu	37	chr5	160059375	160059375	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtctccagtcgcttagCtgcaagaaaggagtcctgtt	13	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160059375	A	A	160059375	5	1	116	1	0	0	0	0	0	0	1	0	1121	811	28	3	3060	3	ATP10B	5	160059375	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	29722	160059375	20855885	755	109751											
GABRA6	2559	broad.mit.edu	37	chr5	161128727	161128727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattcaaccttgtgtactGggtagtttatctttccaaag	9	7	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161128727	T	T	161128727	3	4	116	1	0	0	0	0	1	0	0	0	6225	1357	47	2	1344	2	GABRA6	5	161128727	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1069352	161128727	19786533	756	109752											
GABRA1	2554	broad.mit.edu	37	chr5	161292702	161292702	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacggttgacagacactcaCtcgcccaatttcctgcttca	8	14	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161292702	T	T	161292702	1	4	116	0	1	0	0	0	0	0	0	0	6220	580	20	4		4	GABRA1	5	161292702	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	163975	161292702	19622558	757	109753											
HMMR	3161	broad.mit.edu	37	chr5	162900540	162900540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagatctaaatgtgaaatGtcagctgcttgaaaaagaaa	9	4	2	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162900540	T	T	162900540	3	4	116	1	0	0	0	0	1	0	0	0	7309	1377	48	3	915	3	HMMR	5	162900540	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1607838	162900540	18014720	758	109754											
SLIT3	6586	broad.mit.edu	37	chr5	168187881	168187881	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacattttccgcaggttGggcaacttcttgaagatgcc	9	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168187881	T	T	168187881	2	4	116	1	0	0	0	0	0	0	0	1	14855	1335	47	2		2	SLIT3	5	168187881	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	5287341	168187881	12727379	759	109755											
SLIT3	6586	broad.mit.edu	37	chr5	168189789	168189789	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggagacagagatgggggaAtgagttgggggctgttaggg	22	2	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168189789	T	T	168189789	1	4	116	0	1	0	0	0	0	0	0	0	14855	116	4	5		5	SLIT3	5	168189789	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1908	168189789	12725471	760	109756											
DOCK2	1794	broad.mit.edu	37	chr5	169141187	169141187	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttctccatttccaccctGgtgtgctccacaaagctcac	7	15	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169141187	T	T	169141187	2	4	116	1	0	0	0	0	0	0	0	1	4727	1335	47	2		2	DOCK2	5	169141187	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	951398	169141187	11774073	761	109757											
RANBP17	64901	broad.mit.edu	37	chr5	170640791	170640791	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtctactattagcggaaAtctccaacagtcagactttc	6	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170640791	T	T	170640791	1	4	116	0	1	0	0	0	0	0	0	0	13135	116	4	5		5	RANBP17	5	170640791	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1499604	170640791	10274469	762	109758											
UBTD2	92181	broad.mit.edu	37	chr5	171682508	171682508	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttagggacgccgcccacgaGaaataaaggcccagatccgg	13	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171682508	A	A	171682508	1	1	116	0	1	0	0	0	0	0	0	0	17034	957	33	4		4	UBTD2	5	171682508	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1041717	171682508	9232752	763	109759											
CNOT6	57472	broad.mit.edu	37	chr5	180000988	180000988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttctgttgtttttcagGgtataatagactacattttc	6	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180000988	T	T	180000988	3	4	116	1	0	0	0	0	1	0	0	0	3654	1246	43	2	1504	2	CNOT6	5	180000988	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	8318480	180000988	914272	764	109760											
C6orf145	221749	broad.mit.edu	37	chr6	3754343	3754343	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtggtatcatggtgacctCtaaccccagcccccaagaat	8	14	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3754343	G	G	3754343	1	3	116	0	1	0	0	0	0	0	0	0	2357	928	32	4		4	C6orf145	6	3754343	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08		3754343	167360724	765	109761											
GCNT2	2651	broad.mit.edu	37	chr6	10626804	10626804	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcgaaagaaccctcaatcaGagtgaaactgcgatacaacc	8	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10626804	T	T	10626804	3	4	116	1	0	0	0	0	1	0	0	0	6363	933	33	3	3035	3	GCNT2	6	10626804	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6872461	10626804	160488263	766	109762											
ELOVL2	54898	broad.mit.edu	37	chr6	10995164	10995164	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctctcctgatctgcatgcGatgcttaatacaagacagca	8	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10995164	A	A	10995164	1	1	116	0	1	0	0	0	0	0	0	0	5116	1073	37	4		4	ELOVL2	6	10995164	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	368360	10995164	160119903	767	109763											
KIF13A	63971	broad.mit.edu	37	chr6	17764658	17764658	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctggggcaggcatctagttCtgaacatgagccagtcctgc	13	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17764658	A	A	17764658	4	1	116	1	0	0	0	0	0	1	0	0	8344	922	32	3	345	3	KIF13A	6	17764658	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	6769494	17764658	153350409	768	109764											
FAM65B	9750	broad.mit.edu	37	chr6	24843402	24843402	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaagtgcttctgcaacAtcattctcaaggaacaggtg	10	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24843402	T	T	24843402	3	4	116	1	0	0	0	0	1	0	0	0	5651	214	8	5	1648	5	FAM65B	6	24843402	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	7078744	24843402	146271665	769	109765											
HIST1H2AA	221613	broad.mit.edu	37	chr6	25727627	25727628	+	5'Flank	INS	-	T	T													gtagtttctaaccgtaagggINSttttttttttttttgaggcg					rs61603783		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25727628	T	T	25727627	6	5	116	0	1	1	1	0	0	0	0	0	7195	1276	44	0		0	HIST1H2AA	6	25727627	5'Flank	INS	-	TCGA-44-3918-01A-01D-1105-08	884225	25727627	145387440	770	109766											
SLC17A1	6568	broad.mit.edu	37	chr6	25813574	25813574	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaacttttcaacaagacTtgtgtttttcagtcctcctt	5	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25813574	G	G	25813574	1	3	116	0	1	0	0	0	0	0	0	0	14529	1624	56	5		5	SLC17A1	6	25813574	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	85947	25813574	145301493	771	109767											
SLC17A1	6568	broad.mit.edu	37	chr6	25826618	25826618	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtatcatatcagtacaattCcatatctacacaaattagtt	3	8	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25826618	A	A	25826618	1	1	116	0	1	0	0	0	0	0	0	0	14529	870	30	3		3	SLC17A1	6	25826618	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	13044	25826618	145288449	772	109768											
HIST1H1E	3008	broad.mit.edu	37	chr6	26156939	26156939	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgtcgggttccttcaaactCaacaagaaggcggcctctgg	12	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26156939	G	G	26156939	2	3	116	1	0	0	0	0	0	0	0	1	7193	813	29	4		4	HIST1H1E	6	26156939	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	330321	26156939	144958128	773	109769											
BTN3A3	10384	broad.mit.edu	37	chr6	26448919	26448919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttatccccactttgaGcaccttgataacccttccct	3	16	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26448919	T	T	26448919	1	4	116	0	1	0	0	0	0	0	0	0	1574	986	34	3		3	BTN3A3	6	26448919	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	291980	26448919	144666148	774	109770											
BTN3A3	10384	broad.mit.edu	37	chr6	26452326	26452326	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctataatgccacagatggatCtcatatctacacctttccgc	5	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26452326	G	G	26452326	3	3	116	1	0	0	0	0	1	0	0	0	1574	913	32	4	1476	4	BTN3A3	6	26452326	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3407	26452326	144662741	775	109771											
OR2B3	442184	broad.mit.edu	37	chr6	29054813	29054813	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgtagttgtggtatagcaGagatctaagatggagagatt	13	3	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29054813	T	T	29054813	2	4	116	1	0	0	0	0	0	0	0	1	11084	929	33	3		3	OR2B3	6	29054813	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	2602487	29054813	142060254	776	109772											
MAS1L	116511	broad.mit.edu	37	chr6	29454605	29454605	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacatgctgagtagagtGtggttgctccattgggtcga	13	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29454605	A	A	29454605	3	1	116	1	0	0	0	0	1	0	0	0	9413	1377	48	4	63	4	MAS1L	6	29454605	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	399792	29454605	141660462	777	109773											
ZFP57	346171	broad.mit.edu	37	chr6	29640985	29640985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtgtctggaattcagcCtgggtgcctggaatcctcaa	13	9	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29640985	A	A	29640985	3	1	116	1	0	0	0	0	1	0	0	0	17777	680	24	2	711	2	ZFP57	6	29640985	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	186380	29640985	141474082	778	109774											
HLA-G	3135	broad.mit.edu	37	chr6	29897161	29897161	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acggatatgaatttgttcatGaatattttattttatagtgt	7	2	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29897161	A	A	29897161	1	1	116	0	1	0	0	0	0	0	0	0	7279	1305	45	4		4	HLA-G	6	29897161	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	256176	29897161	141217906	779	109775											
MDC1	9656	broad.mit.edu	37	chr6	30675547	30675547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggatcactttgggcaCcttctcttctaactcggctg	8	14	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30675547	A	A	30675547	3	1	116	1	0	0	0	0	1	0	0	0	9496	507	18	3	3492	3	MDC1	6	30675547	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	778386	30675547	140439520	780	109776											
TCF19	6941	broad.mit.edu	37	chr6	31129474	31129474	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggctccacagcggcctctCagcaccttctcccctgcccc	9	21	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31129474	T	T	31129474	2	4	116	1	0	0	0	0	0	0	0	1	15811	813	29	4		4	TCF19	6	31129474	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	453927	31129474	139985593	781	109777											
NOTCH4	4855	broad.mit.edu	37	chr6	32164759	32164759	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcagttcttcaaccaggtCttccaccgccagcctggcag	8	15	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32164759	G	G	32164759	3	3	116	1	0	0	0	0	1	0	0	0	10646	913	32	4	880	4	NOTCH4	6	32164759	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1035285	32164759	138950308	782	109778											
C6orf10	10665	broad.mit.edu	37	chr6	32260988	32260989	+	Frame_Shift_Ins	INS	-	T	T													tcaaaactctccttcttttcINSttgggcttcctgtcctttta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32260989	T	T	32260988	7	5	116	1	0	1	1	0	0	0	0	0	2340	922	32	0	233	0	C6orf10	6	32260988	Frame_Shift_Ins	INS	-	TCGA-44-3918-01A-01D-1105-08	96229	32260988	138854079	783	109779											
HLA-DPA1	3113	broad.mit.edu	37	chr6	33037434	33037434	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaccgttggtggcctgagtGtggttggaacgctggatcaa	16	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33037434	A	A	33037434	2	1	116	1	0	0	0	0	0	0	0	1	7269	1368	48	4		4	HLA-DPA1	6	33037434	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	776446	33037434	138077633	784	109780											
COL11A2	1302	broad.mit.edu	37	chr6	33145571	33145571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccattcccgagggtgtgaCggtcagacctccaatccatc	11	14	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33145571	A	A	33145571	1	1	116	0	1	0	0	0	0	0	0	0	3700	551	19	3		3	COL11A2	6	33145571	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	108137	33145571	137969496	785	109781											
SLC39A7	7922	broad.mit.edu	37	chr6	33170037	33170037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctcaatgcctccattccCaggccagggccccattctgt	8	16	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33170037	A	A	33170037	1	1	116	0	1	0	0	0	0	0	0	0	14737	609	21	2		2	SLC39A7	6	33170037	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	24466	33170037	137945030	786	109782											
GRM4	2914	broad.mit.edu	37	chr6	33990499	33990499	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtccgtgggtgcccacGggcaggcaagacagctgggc	16	14	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33990499	A	A	33990499	1	1	116	0	1	0	0	0	0	0	0	0	6865	1131	39	4		4	GRM4	6	33990499	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	820462	33990499	137124568	787	109783											
GRM4	2914	broad.mit.edu	37	chr6	34024378	34024379	+	Missense_Mutation	DNP	GG	TT	TT													gtggcggctcagcttgcagtGgaagttgtcctcccagaact							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	34024379	TT	TT	34024378	3	4	116	1	0	0	0	0	1	0	0	0	6865	1348	47	2	1651	2	GRM4	6	34024378	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	33879	34024378	137090689	788	109784											
ZNF76	7629	broad.mit.edu	37	chr6	35260642	35260642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagcagatgtcagccttGgctctcctctcccagccgcc	10	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35260642	T	T	35260642	1	4	116	0	1	0	0	0	0	0	0	0	18264	1363	47	2		2	ZNF76	6	35260642	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1236264	35260642	135854425	789	109785											
FANCE	2178	broad.mit.edu	37	chr6	35424179	35424179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatctttcagcagtggtgGctttatccatggggaaggct	14	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35424179	T	T	35424179	1	4	116	0	1	0	0	0	0	0	0	0	5723	1218	42	3		3	FANCE	6	35424179	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	163537	35424179	135690888	790	109786											
C6orf222	389384	broad.mit.edu	37	chr6	36294270	36294270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagggttgctatggcaaCtgcagagcctgctcaccata	11	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36294270	A	A	36294270	1	1	116	0	1	0	0	0	0	0	0	0	2379	580	20	3		3	C6orf222	6	36294270	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	870091	36294270	134820797	791	109787											
DNAH8	1769	broad.mit.edu	37	chr6	38690781	38690781	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggattatcgggatctcattCcttctgaagaagggatagtt	11	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38690781	A	A	38690781	1	1	116	0	1	0	0	0	0	0	0	0	4647	870	30	3		3	DNAH8	6	38690781	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	2396511	38690781	132424286	792	109788											
DNAH8	1769	broad.mit.edu	37	chr6	38820606	38820606	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctttaaatttttttattaGaatttctttaaaaacttagg	4	3	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38820606	T	T	38820606	1	4	116	0	1	0	0	0	0	0	0	0	4647	957	33	3		3	DNAH8	6	38820606	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	129825	38820606	132294461	793	109789											
KCNK16	83795	broad.mit.edu	37	chr6	39285745	39285745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcctgcaagggaagggggGcgtgtgcaaatatggagact	16	6	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39285745	T	T	39285745	1	4	116	0	1	0	0	0	0	0	0	0	8133	1218	42	3		3	KCNK16	6	39285745	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	465139	39285745	131829322	794	109790											
NCR2	9436	broad.mit.edu	37	chr6	41309566	41309566	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacctcctggactccccgCgacctggtctcttcacagac	8	18	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41309566	T	T	41309566	2	4	116	1	0	0	0	0	0	0	0	1	10333	755	27	4		4	NCR2	6	41309566	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	2023821	41309566	129805501	795	109791											
UBR2	23304	broad.mit.edu	37	chr6	42600433	42600433	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaaatttaggagagtacaGagccttattttagatctcaa	7	6	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42600433	A	A	42600433	2	1	116	1	0	0	0	0	0	0	0	1	17028	933	33	4		4	UBR2	6	42600433	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1290867	42600433	128514634	796	109792											
UBR2	23304	broad.mit.edu	37	chr6	42626593	42626593	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaattaatgtcTtgacgagtttttcccaacta	4	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42626593	C	C	42626593	1	2	116	0	1	0	0	0	0	0	0	0	17028	1624	56	5		5	UBR2	6	42626593	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	26160	42626593	128488474	797	109793											
PTK7	5754	broad.mit.edu	37	chr6	43106643	43106643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggaggagggcaaacccGgctacttggattgcctgacc	14	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43106643	T	T	43106643	3	4	116	1	0	0	0	0	1	0	0	0	12871	1116	39	1	1315	1	PTK7	6	43106643	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	480050	43106643	128008424	798	109794											
PTK7	5754	broad.mit.edu	37	chr6	43112186	43112186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcttgtcctcctccttccCaggtgggcctttgcagaacg	10	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43112186	T	T	43112186	1	4	116	0	1	0	0	0	0	0	0	0	12871	609	21	4		4	PTK7	6	43112186	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5543	43112186	128002881	799	109795											
SLC22A7	10864	broad.mit.edu	37	chr6	43269812	43269812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcagggaaggtcctggCggggggaccgggggttgcag	22	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43269812	A	A	43269812	1	1	116	0	1	0	0	0	0	0	0	0	14573	783	27	3		3	SLC22A7	6	43269812	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	157626	43269812	127845255	800	109796											
TMEM63B	55362	broad.mit.edu	37	chr6	44117945	44117945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacctgtaccgttccctGctcccctccctccagctctg	6	20	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44117945	T	T	44117945	1	4	116	0	1	0	0	0	0	0	0	0	16314	1334	46	3		3	TMEM63B	6	44117945	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	848133	44117945	126997122	801	109797											
AARS2	57505	broad.mit.edu	37	chr6	44268086	44268086	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttcaccaagggggtgtgTgtctttgggcccagttctgc	13	10	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44268086	A	A	44268086	1	1	116	0	1	0	0	0	0	0	0	0	20	1711	59	5		5	AARS2	6	44268086	3'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	150141	44268086	126846981	802	109798											
RCAN2	10231	broad.mit.edu	37	chr6	46190826	46190826	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttttgacaaacaacagggGgaaaaagcatgataaagagg	11	4	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46190826	A	A	46190826	1	1	116	0	1	0	0	0	0	0	0	0	13277	1247	43	4		4	RCAN2	6	46190826	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	1922740	46190826	124924241	803	109799											
MEP1A	4224	broad.mit.edu	37	chr6	46803277	46803277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaacgtgaaggggatggCgagctgcaggtaggctctgt	18	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46803277	A	A	46803277	3	1	116	1	0	0	0	0	1	0	0	0	9568	768	27	3	2125	3	MEP1A	6	46803277	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	612451	46803277	124311790	804	109800											
OPN5	221391	broad.mit.edu	37	chr6	47754378	47754378	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggggatttcaggtaacacAaccatgctgtgttttctttg	10	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47754378	T	T	47754378	1	4	116	0	1	0	0	0	0	0	0	0	10977	145	5	5		5	OPN5	6	47754378	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	951101	47754378	123360689	805	109801											
CRISP3	10321	broad.mit.edu	37	chr6	49703163	49703163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgcaacatcataacatGgtttattattttacttgttg	5	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49703163	T	T	49703163	1	4	116	0	1	0	0	0	0	0	0	0	3913	1363	47	2		2	CRISP3	6	49703163	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1948785	49703163	121411904	806	109802											
CRISP1	167	broad.mit.edu	37	chr6	49819733	49819733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcttcagcatgttgctgGctggtggaactactcttctc	9	12	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49819733	T	T	49819733	3	4	116	1	0	0	0	0	1	0	0	0	3911	1203	42	3	597	3	CRISP1	6	49819733	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	116570	49819733	121295334	807	109803											
PKHD1	5314	broad.mit.edu	37	chr6	51768588	51768588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtactcaactcaacaccCttgattctactaatacacat	2	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51768588	A	A	51768588	1	1	116	0	1	0	0	0	0	0	0	0	12066	696	24	2		2	PKHD1	6	51768588	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1948855	51768588	119346479	808	109804											
PKHD1	5314	broad.mit.edu	37	chr6	51909775	51909776	+	Missense_Mutation	DNP	GG	TT	TT													cactctcacctgagtatgctGgttggcagtagccaacatgt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51909776	TT	TT	51909775	3	4	116	1	0	0	0	0	1	0	0	0	12066	1357	47	2	9731	2	PKHD1	6	51909775	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	141187	51909775	119205292	809	109805											
GSTA1	2938	broad.mit.edu	37	chr6	52662467	52662467	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtaaatacgttcttgtTagttcattctattatagact	5	6	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52662467	C	C	52662467	1	2	116	0	1	0	0	0	0	0	0	0	6896	1769	61	5		5	GSTA1	6	52662467	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	752692	52662467	118452600	810	109806											
LRRC1	55227	broad.mit.edu	37	chr6	53747624	53747624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcattatatttatgcttGgtatacactatacatgaact	4	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53747624	T	T	53747624	1	4	116	0	1	0	0	0	0	0	0	0	9053	1363	47	2		2	LRRC1	6	53747624	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1085157	53747624	117367443	811	109807											
GFRAL	389400	broad.mit.edu	37	chr6	55266543	55266543	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacaagcacatttgtgaaaTccttaaaatggcatgttgtt	7	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55266543	A	A	55266543	1	1	116	0	1	0	0	0	0	0	0	0	6415	1450	50	5		5	GFRAL	6	55266543	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	1518919	55266543	115848524	812	109808											
HMGCLL1	54511	broad.mit.edu	37	chr6	55406798	55406798	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgaaatccatgtaaatcTttacaatcttaaatttatta	2	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55406798	C	C	55406798	1	2	116	0	1	0	0	0	0	0	0	0	7297	1624	56	5		5	HMGCLL1	6	55406798	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	140255	55406798	115708269	813	109809											
DST	667	broad.mit.edu	37	chr6	56500450	56500450	+	Frame_Shift_Del	DEL	C	-	-													gatctatcacagctgtacttCcgctgaatggcatcttttag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56500450	-	-	56500450	7	5	116	1	0	1	0	1	0	0	0	0	4823	842	30	0	18943	0	DST	6	56500450	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	1093652	56500450	114614617	814	109810											
EYS	346007	broad.mit.edu	37	chr6	66094394	66094394	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtaaatcctgatatacagCtgtaaatacatcagtgtaaa	6	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66094394	G	G	66094394	5	3	116	1	0	0	0	0	0	0	1	0	5375	811	28	4	8356	4	EYS	6	66094394	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	9593944	66094394	105020673	815	109811											
BAI3	577	broad.mit.edu	37	chr6	70065638	70065638	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagatatctgtaaacttcaGataatctgattagtaaaaga	6	4	3	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70065638	T	T	70065638	1	4	116	0	1	0	0	0	0	0	0	0	1305	957	33	3		3	BAI3	6	70065638	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3971244	70065638	101049429	816	109812											
COL19A1	1310	broad.mit.edu	37	chr6	70733619	70733619	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttacattttaccactAagatatgctatttaatgcta	4	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70733619	G	G	70733619	1	3	116	0	1	0	0	0	0	0	0	0	3708	377	13	5		5	COL19A1	6	70733619	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	667981	70733619	100381448	817	109813											
COL9A1	1297	broad.mit.edu	37	chr6	71011650	71011650	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcagccacagccctgccTgatcatttctgggaataagt	9	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71011650	G	G	71011650	1	3	116	0	1	0	0	0	0	0	0	0	3739	1595	55	5		5	COL9A1	6	71011650	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	278031	71011650	100103417	818	109814											
FAM135A	57579	broad.mit.edu	37	chr6	71235818	71235818	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctcacacagatgtattcaGaaatccctacagttgaaagt	6	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71235818	C	C	71235818	3	2	116	1	0	0	0	0	1	0	0	0	5494	943	33	4	3159	4	FAM135A	6	71235818	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	224168	71235818	99879249	819	109815											
RIMS1	22999	broad.mit.edu	37	chr6	72892193	72892193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggatgagggcaaagcggCggatgaggaaaagcaaagaa	17	5	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72892193	A	A	72892193	3	1	116	1	0	0	0	0	1	0	0	0	13478	768	27	3	1041	3	RIMS1	6	72892193	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1656375	72892193	98222874	820	109816											
KCNQ5	56479	broad.mit.edu	37	chr6	73904317	73904317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatctgactatcaaagccCtgtggatagcaaagatcttt	8	9	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73904317	A	A	73904317	3	1	116	1	0	0	0	0	1	0	0	0	8156	681	24	2	2094	2	KCNQ5	6	73904317	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1012124	73904317	97210750	821	109817											
COL12A1	1303	broad.mit.edu	37	chr6	75840486	75840486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacccatctctcaccacccCcctcccaccactcattcaat	1	23	4	0	rs143357577	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75840486	A	A	75840486	1	1	116	0	1	0	0	0	0	0	0	0	3701	638	22	2		2	COL12A1	6	75840486	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1936169	75840486	95274581	822	109818											
SENP6	26054	broad.mit.edu	37	chr6	76376442	76376442	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttagtcattttgtccagtGatgatgatgatgacaacgac	9	6	1	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76376442	A	A	76376442	3	1	116	1	0	0	0	0	1	0	0	0	14163	1290	45	4	1047	4	SENP6	6	76376442	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	535956	76376442	94738625	823	109819											
SENP6	26054	broad.mit.edu	37	chr6	76423247	76423247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccttgtatcctacttatGgactcactccgaggcccttc	7	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76423247	T	T	76423247	3	4	116	1	0	0	0	0	1	0	0	0	14163	1348	47	2	3014	2	SENP6	6	76423247	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	46805	76423247	94691820	824	109820											
IMPG1	3617	broad.mit.edu	37	chr6	76744429	76744430	+	Missense_Mutation	DNP	CA	AC	AC													cctgctggcagatgctgaccCagtcctgatattcccctgtg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	76744430	AC	AC	76744429	3	1	116	1	0	0	0	0	1	0	0	0	7798	595	21	2	2076	2	IMPG1	6	76744429	Missense_Mutation	DNP	CA	TCGA-44-3918-01A-01D-1105-08	321182	76744429	94370638	825	109821											
DOPEY1	23033	broad.mit.edu	37	chr6	83820084	83820085	+	Intron	DNP	GG	TT	TT													caaatatttctttagagtcaGgcactattccagacatatat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	83820085	TT	TT	83820084	1	4	116	0	1	0	0	0	0	0	0	0	4747	1015	35	2		2	DOPEY1	6	83820084	Intron	DNP	GG	TCGA-44-3918-01A-01D-1105-08	7075655	83820084	87294983	826	109822											
CYB5R4	51167	broad.mit.edu	37	chr6	84569531	84569532	+	Missense_Mutation	DNP	GG	TT	TT													gtcccttcccagtctttcccGgcccccaggtcgcagcagcg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	84569532	TT	TT	84569531	3	4	116	1	0	0	0	0	1	0	0	0	4162	1103	39	1	32	1	CYB5R4	6	84569531	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	749447	84569531	86545536	827	109823											
KIAA1009	22832	broad.mit.edu	37	chr6	84872831	84872831	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattagaacagttatgattaTaaaggtacactgtttcagct	7	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84872831	G	G	84872831	1	3	116	0	1	0	0	0	0	0	0	0	8273	1421	49	5		5	KIAA1009	6	84872831	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	303300	84872831	86242236	828	109824											
HTR1E	3354	broad.mit.edu	37	chr6	87726241	87726241	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaattcttgaacatacttGgttcaggagagtttgtaagt	9	4	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87726241	T	T	87726241	1	4	116	0	1	0	0	0	0	0	0	0	7509	1363	47	2		2	HTR1E	6	87726241	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	2853410	87726241	83388826	829	109825											
GABRR2	2570	broad.mit.edu	37	chr6	90012098	90012098	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagatgagacctactgcatCaacaaggaggcgctctagga	11	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90012098	T	T	90012098	1	4	116	0	1	0	0	0	0	0	0	0	6237	841	29	4		4	GABRR2	6	90012098	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2285857	90012098	81102969	830	109826											
CASP8AP2	9994	broad.mit.edu	37	chr6	90572173	90572173	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagtagaagaggaagaaaaGatattagacatagccagttt	10	3	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90572173	T	T	90572173	3	4	116	1	0	0	0	0	1	0	0	0	2704	942	33	3	767	3	CASP8AP2	6	90572173	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	560075	90572173	80542894	831	109827											
BACH2	60468	broad.mit.edu	37	chr6	90660326	90660326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactttgattggtaccgggCagctggtgttgggccgcatc	15	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90660326	A	A	90660326	3	1	116	1	0	0	0	0	1	0	0	0	1289	710	25	3	1038	3	BACH2	6	90660326	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	88153	90660326	80454741	832	109828											
NDUFAF4	29078	broad.mit.edu	37	chr6	97338990	97338990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgattttcttcattttgatCgtattgctttcttgtcttca	6	7	5	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97338990	A	A	97338990	3	1	116	1	0	0	0	0	1	0	0	0	10372	884	31	3	13	3	NDUFAF4	6	97338990	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	6678664	97338990	73776077	833	109829											
PREP	5550	broad.mit.edu	37	chr6	105776623	105776623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgattttcaataacatagCattatacttccatttcccca	3	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105776623	A	A	105776623	1	1	116	0	1	0	0	0	0	0	0	0	12580	725	25	3		3	PREP	6	105776623	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	8437633	105776623	65338444	834	109830											
CDK19	23097	broad.mit.edu	37	chr6	110947904	110947904	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagaaaacaaattcctgtTgtttataaattacccagtct	7	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110947904	A	A	110947904	1	1	116	0	1	0	0	0	0	0	0	0	3165	1827	63	5		5	CDK19	6	110947904	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	5171281	110947904	60167163	835	109831											
LAMA4	3910	broad.mit.edu	37	chr6	112463543	112463543	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgctttgcagaaatgggcaGagtgctttcccgtgcttccc	12	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112463543	T	T	112463543	1	4	116	0	1	0	0	0	0	0	0	0	8680	957	33	3		3	LAMA4	6	112463543	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1515639	112463543	58651524	836	109832											
LAMA2	3908	broad.mit.edu	37	chr6	129250534	129250534	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaagttcatcagtcatgtGaggatgagtgatagcacacc	11	7	3	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129250534	T	T	129250534	1	4	116	0	1	0	0	0	0	0	0	0	8678	1305	45	3		3	LAMA2	6	129250534	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	16786991	129250534	41864533	837	109833											
LAMA2	3908	broad.mit.edu	37	chr6	129511486	129511486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttcctactggacctatgGcaaagtaagcaagcaccatt	9	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129511486	T	T	129511486	3	4	116	1	0	0	0	0	1	0	0	0	8678	1203	42	3	1646	3	LAMA2	6	129511486	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	260952	129511486	41603581	838	109834											
BCLAF1	9774	broad.mit.edu	37	chr6	136596682	136596682	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcatacctttaacatgatGaaccaaggacacaatgtgtt	7	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136596682	T	T	136596682	3	4	116	1	0	0	0	0	1	0	0	0	1388	1290	45	3	954	3	BCLAF1	6	136596682	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	7085196	136596682	34518385	839	109835											
BCLAF1	9774	broad.mit.edu	37	chr6	136600953	136600953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgatcgagaactagactGtgatctagactttgaccttg	9	8	2	6			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136600953	T	T	136600953	3	4	116	1	0	0	0	0	1	0	0	0	1388	1386	48	3	2754	3	BCLAF1	6	136600953	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4271	136600953	34514114	840	109836											
OLIG3	167826	broad.mit.edu	37	chr6	137815335	137815335	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggggatgcggccctaccgTggggaggctttaggcgggaa	19	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137815335	A	A	137815335	1	1	116	0	1	0	0	0	0	0	0	0	10956	1711	59	5		5	OLIG3	6	137815335	5'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	1214382	137815335	33299732	841	109837											
C6orf115	58527	broad.mit.edu	37	chr6	139355328	139355328	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcacgaggttaacctcttaGtggaggaaattcatcgtttg	10	7	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139355328	C	C	139355328	3	2	116	1	0	0	0	0	1	0	0	0	2345	1029	36	4	33	4	C6orf115	6	139355328	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1539993	139355328	31759739	842	109838											
UTRN	7402	broad.mit.edu	37	chr6	144843387	144843387	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgttcttgtgcctacttaGatggtctatatcttttacaa	6	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144843387	T	T	144843387	1	4	116	0	1	0	0	0	0	0	0	0	17230	957	33	3		3	UTRN	6	144843387	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5488059	144843387	26271680	843	109839											
GRM1	2911	broad.mit.edu	37	chr6	146755806	146755806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccgtcgcctttccgcgaCtcggtggcctcgggcagctc	12	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146755806	A	A	146755806	3	1	116	1	0	0	0	0	1	0	0	0	6862	564	20	3	3554	3	GRM1	6	146755806	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1912419	146755806	24359261	844	109840											
SYNE1	23345	broad.mit.edu	37	chr6	152469245	152469245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccttcttcatcctcagagGgcagagctctggacattgca	10	12	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152469245	T	T	152469245	3	4	116	1	0	0	0	0	1	0	0	0	15564	1232	43	2	1595	2	SYNE1	6	152469245	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	5713439	152469245	18645822	845	109841											
SYNE1	23345	broad.mit.edu	37	chr6	152599126	152599126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtacacacacaagtacgCgtcaccgccaacctgttcct	7	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152599126	A	A	152599126	1	1	116	0	1	0	0	0	0	0	0	0	15564	783	27	3		3	SYNE1	6	152599126	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	129881	152599126	18515941	846	109842											
OPRM1	4988	broad.mit.edu	37	chr6	154411019	154411019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccttgctctggcagatGccttagccaccagtaccctg	8	15	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154411019	T	T	154411019	3	4	116	1	0	0	0	0	1	0	0	0	10981	1319	46	3	689	3	OPRM1	6	154411019	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1811893	154411019	16704048	847	109843											
TIAM2	26230	broad.mit.edu	37	chr6	155504666	155504666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtcttccttcttaactGctggtatcaacagccaatat	5	11	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155504666	T	T	155504666	1	4	116	0	1	0	0	0	0	0	0	0	16014	1334	46	3		3	TIAM2	6	155504666	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1093647	155504666	15610401	848	109844											
IGF2R	3482	broad.mit.edu	37	chr6	160466889	160466889	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaagacagaaggggagaaCtgcacggtctttgactccca	11	10	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160466889	G	G	160466889	3	3	116	1	0	0	0	0	1	0	0	0	7646	564	20	4	1932	4	IGF2R	6	160466889	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4962223	160466889	10648178	849	109845											
PLG	5340	broad.mit.edu	37	chr6	161160296	161160296	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaagatatttgctttatgtCtgggttttatgggccatggc	12	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161160296	T	T	161160296	1	4	116	0	1	0	0	0	0	0	0	0	12181	928	32	4		4	PLG	6	161160296	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	693407	161160296	9954771	850	109846											
C6orf118	168090	broad.mit.edu	37	chr6	165693636	165693636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgaataccataggttagaAaaaaatacattaagcatgaa	6	4	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165693636	T	T	165693636	1	4	116	0	1	0	0	0	0	0	0	0	2346	29	1	5		5	C6orf118	6	165693636	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	4533340	165693636	5421431	851	109847											
PDE10A	10846	broad.mit.edu	37	chr6	165863740	165863740	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcttcttacctattttaatGatgctgctcagttcatagag	7	8	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165863740	T	T	165863740	2	4	116	1	0	0	0	0	0	0	0	1	11724	1280	45	3		3	PDE10A	6	165863740	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	170104	165863740	5251327	852	109848											
PRKAR1B	5575	broad.mit.edu	37	chr7	716753	716753	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcaacgggggctgcccacctCctggaggccagggagggagg	19	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	716753	G	G	716753	1	3	116	0	1	0	0	0	0	0	0	0	12610	870	30	4		4	PRKAR1B	7	716753	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08		716753	158421910	853	109849											
SUN1	23353	broad.mit.edu	37	chr7	896192	896192	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgacagacactcctgctgGgctgcgtgaggacagagggg	17	11	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	896192	A	A	896192	1	1	116	0	1	0	0	0	0	0	0	0	15509	1247	43	4		4	SUN1	7	896192	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	179439	896192	158242471	854	109850											
EIF3B	8662	broad.mit.edu	37	chr7	2412253	2412253	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaacattttaactgatcaaGagcactatgttctgaattga	7	6	2	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2412253	T	T	2412253	1	4	116	0	1	0	0	0	0	0	0	0	5053	957	33	3		3	EIF3B	7	2412253	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1516061	2412253	156726410	855	109851											
LFNG	3955	broad.mit.edu	37	chr7	2566918	2566918	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaccctgttgcgctgccCtggcctcggcattcgaggct	14	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2566918	T	T	2566918	1	4	116	0	1	0	0	0	0	0	0	0	8809	696	24	4		4	LFNG	7	2566918	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	154665	2566918	156571745	856	109852											
TTYH3	80727	broad.mit.edu	37	chr7	2698689	2698689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggatggggggctgctcaGccttgggggtccgctgttcc	19	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2698689	T	T	2698689	1	4	116	0	1	0	0	0	0	0	0	0	16867	986	34	3		3	TTYH3	7	2698689	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	131771	2698689	156439974	857	109853											
CARD11	84433	broad.mit.edu	37	chr7	2951946	2951946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatctgcagagagaggggCcagtcctgagggcagcacga	16	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2951946	A	A	2951946	1	1	116	0	1	0	0	0	0	0	0	0	2671	754	26	3		3	CARD11	7	2951946	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	253257	2951946	156186717	858	109854											
CARD11	84433	broad.mit.edu	37	chr7	2963813	2963813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagagagcgagggggcaaGgggtctttatcccatcccca	14	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2963813	T	T	2963813	1	4	116	0	1	0	0	0	0	0	0	0	2671	1015	35	2		2	CARD11	7	2963813	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	11867	2963813	156174850	859	109855											
SDK1	221935	broad.mit.edu	37	chr7	3860954	3860954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaagtcggcctgtgtattGtttttgtccttccagctctt	8	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3860954	T	T	3860954	1	4	116	0	1	0	0	0	0	0	0	0	14081	1392	48	3		3	SDK1	7	3860954	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	897141	3860954	155277709	860	109856											
KIAA0415	9907	broad.mit.edu	37	chr7	4826038	4826038	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacctcagcaccctcagattGagcttccccaacctctttaa	4	17	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4826038	C	C	4826038	3	2	116	1	0	0	0	0	1	0	0	0	8245	1281	45	4	1328	4	KIAA0415	7	4826038	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	965084	4826038	154312625	861	109857											
RSPH10B2	728194	broad.mit.edu	37	chr7	6820652	6820653	+	Intron	DNP	GG	TT	TT													gaggcaggaggatcacctgaGgtcaaggagttcaagaccaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6820653	TT	TT	6820652	1	4	116	0	1	0	0	0	0	0	0	0	13815	1015	35	2		2	RSPH10B2	7	6820652	Intron	DNP	GG	TCGA-44-3918-01A-01D-1105-08	1994614	6820652	152318011	862	109858											
NXPH1	30010	broad.mit.edu	37	chr7	8790617	8790617	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcagagatgtaaatgccAtttttctcttctgttttcag	8	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8790617	G	G	8790617	1	3	116	0	1	0	0	0	0	0	0	0	10885	232	8	5		5	NXPH1	7	8790617	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1969965	8790617	150348046	863	109859											
DGKB	1607	broad.mit.edu	37	chr7	14722152	14722152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtgtgggtgaatgctgGgatttgttttccaattttta	11	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14722152	T	T	14722152	1	4	116	0	1	0	0	0	0	0	0	0	4506	1247	43	2		2	DGKB	7	14722152	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5931535	14722152	144416511	864	109860											
TWISTNB	221830	broad.mit.edu	37	chr7	19748721	19748721	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcgttttacgccatccaCcaacgaccacgcccctagga	7	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19748721	A	A	19748721	1	1	116	0	1	0	0	0	0	0	0	0	16910	522	18	3		3	TWISTNB	7	19748721	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	5026569	19748721	139389942	865	109861											
ABCB5	340273	broad.mit.edu	37	chr7	20685634	20685634	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttggcataaaaaggactaTagcttcaaaagtgtctcttg	8	6	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20685634	C	C	20685634	1	2	116	0	1	0	0	0	0	0	0	0	44	1406	49	5		5	ABCB5	7	20685634	5'Flank	SNP	T	TCGA-44-3918-01A-01D-1105-08	936913	20685634	138453029	866	109862											
DNAH11	8701	broad.mit.edu	37	chr7	21747331	21747331	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcagattttgagaacactGaaccgaacatatgttaacat	6	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21747331	A	A	21747331	2	1	116	1	0	0	0	0	0	0	0	1	4639	1277	45	4		4	DNAH11	7	21747331	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1061697	21747331	137391332	867	109863											
GPNMB	10457	broad.mit.edu	37	chr7	23299711	23299711	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctacagaagacatggacgGgcatatgttcccatcgcaca	10	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23299711	T	T	23299711	2	4	116	1	0	0	0	0	0	0	0	1	6685	1219	43	2		2	GPNMB	7	23299711	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1552380	23299711	135838952	868	109864											
STK31	56164	broad.mit.edu	37	chr7	23802539	23802539	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaacgcttaaaaacattGcaggttggaattaaaaatat	6	4	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23802539	A	A	23802539	2	1	116	1	0	0	0	0	0	0	0	1	15414	1310	46	4		4	STK31	7	23802539	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	502828	23802539	135336124	869	109865											
MPP6	51678	broad.mit.edu	37	chr7	24705683	24705683	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaaaaaaaagaaaaagatGatgtatctcacaaccagaaa	6	6	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24705683	T	T	24705683	3	4	116	1	0	0	0	0	1	0	0	0	9832	1290	45	3	953	3	MPP6	7	24705683	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	903144	24705683	134432980	870	109866											
OSBPL3	26031	broad.mit.edu	37	chr7	24870631	24870631	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattttctttcagaaagccAaagatttgtctttggttgtt	8	5	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24870631	T	T	24870631	1	4	116	0	1	0	0	0	0	0	0	0	11373	145	5	5		5	OSBPL3	7	24870631	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	164948	24870631	134268032	871	109867											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26237076	26237076	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttgcttgcaggatccctCattacctttcaaaccaaagg	6	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26237076	G	G	26237076	3	3	116	1	0	0	0	0	1	0	0	0	7326	826	29	4	934	4	HNRNPA2B1	7	26237076	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1366445	26237076	132901587	872	109868											
HOXA2	3199	broad.mit.edu	37	chr7	27140602	27140602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcagttgggaacagtggGtgactggtgctgaaaatgtt	15	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27140602	T	T	27140602	3	4	116	1	0	0	0	0	1	0	0	0	7359	1261	44	3	260	3	HOXA2	7	27140602	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	903526	27140602	131998061	873	109869											
HOXA7	3204	broad.mit.edu	37	chr7	27195972	27195972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtagccggacgcaaaggGgctctgataaagggggctgt	17	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27195972	T	T	27195972	3	4	116	1	0	0	0	0	1	0	0	0	7364	1232	43	2	507	2	HOXA7	7	27195972	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	55370	27195972	131942691	874	109870											
SCRN1	9805	broad.mit.edu	37	chr7	29980336	29980336	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctttgccagcaccgcagTctagatgatcctcaactgga	9	12	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29980336	A	A	29980336	3	1	116	1	0	0	0	0	1	0	0	0	14051	1667	58	5	559	5	SCRN1	7	29980336	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	2784364	29980336	129158327	875	109871											
GHRHR	2692	broad.mit.edu	37	chr7	31016237	31016238	+	Intron	DNP	AC	TT	TT													ggagggaggtgctgttgcccAcgggccttggctgagttcat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31016238	TT	TT	31016237	1	4	116	0	1	0	0	0	0	0	0	0	6437	174	6	5		5	GHRHR	7	31016237	Intron	DNP	AC	TCGA-44-3918-01A-01D-1105-08	1035901	31016237	128122426	876	109872											
PDE1C	5137	broad.mit.edu	37	chr7	31862793	31862794	+	Missense_Mutation	DNP	GG	TT	TT													atgacagaattgttgatcggGgcacttccctctgaaccaga							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31862794	TT	TT	31862793	3	4	116	1	0	0	0	0	1	0	0	0	11729	1219	43	2	444	2	PDE1C	7	31862793	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	846556	31862793	127275870	877	109873											
AOAH	313	broad.mit.edu	37	chr7	36661407	36661407	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaattgaagagcacacaCaggaggggttcagcctgctt	12	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36661407	G	G	36661407	1	3	116	0	1	0	0	0	0	0	0	0	728	493	17	4		4	AOAH	7	36661407	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4798614	36661407	122477256	878	109874											
ELMO1	9844	broad.mit.edu	37	chr7	37354440	37354440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtatcccatattaaataaTgtagttgacctaccttttct	4	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37354440	C	C	37354440	1	2	116	0	1	0	0	0	0	0	0	0	5107	1479	51	5		5	ELMO1	7	37354440	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	693033	37354440	121784223	879	109875											
URGCP	55665	broad.mit.edu	37	chr7	43918845	43918845	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgacagcatttcttgaaGcctgcttctctccactgtgg	9	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43918845	A	A	43918845	3	1	116	1	0	0	0	0	1	0	0	0	17152	971	34	4	2582	4	URGCP	7	43918845	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6564405	43918845	115219818	880	109876											
POLM	27434	broad.mit.edu	37	chr7	44118364	44118364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtctggtacctctctgagCgccgaactctctccacctcc	8	17	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44118364	A	A	44118364	3	1	116	1	0	0	0	0	1	0	0	0	12301	768	27	3	823	3	POLM	7	44118364	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	199519	44118364	115020299	881	109877											
GCK	2645	broad.mit.edu	37	chr7	44228500	44228500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaatgcccaatggagggCgagataccttctccttcttg	10	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44228500	A	A	44228500	1	1	116	0	1	0	0	0	0	0	0	0	6355	783	27	3		3	GCK	7	44228500	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	110136	44228500	114910163	882	109878											
ADCY1	107	broad.mit.edu	37	chr7	45662261	45662261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacatcgtgggtttcacGggcttggcatcccagtgcac	13	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45662261	T	T	45662261	2	4	116	1	0	0	0	0	0	0	0	1	292	1103	39	1		1	ADCY1	7	45662261	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1433761	45662261	113476402	883	109879											
ADCY1	107	broad.mit.edu	37	chr7	45726179	45726179	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccgggcgcagctacgagccGattgtggccatcctgctctt	12	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45726179	T	T	45726179	2	4	116	1	0	0	0	0	0	0	0	1	292	1045	37	3		3	ADCY1	7	45726179	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	63918	45726179	113412484	884	109880											
IGFBP1	3484	broad.mit.edu	37	chr7	45931536	45931536	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttattctcttaggagccCtgccgaatagaactctacag	8	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45931536	A	A	45931536	2	1	116	1	0	0	0	0	0	0	0	1	7648	668	24	2		2	IGFBP1	7	45931536	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	205357	45931536	113207127	885	109881											
IGFBP3	3486	broad.mit.edu	37	chr7	45957088	45957088	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagtcatcaatatctatcAcagtcttttaaaaatcttaa	4	7	6	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45957088	T	T	45957088	1	4	116	0	1	0	0	0	0	0	0	0	7650	174	6	5		5	IGFBP3	7	45957088	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	25552	45957088	113181575	886	109882											
PKD1L1	168507	broad.mit.edu	37	chr7	47925180	47925180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctttctgatttaaaggcCcatgttgatgtgatctcaca	9	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47925180	A	A	47925180	1	1	116	0	1	0	0	0	0	0	0	0	12059	638	22	2		2	PKD1L1	7	47925180	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1968092	47925180	111213483	887	109883											
ABCA13	154664	broad.mit.edu	37	chr7	48316041	48316041	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagttctctctctgagaagcAtagtagatttcacagaacag	8	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48316041	G	G	48316041	3	3	116	1	0	0	0	0	1	0	0	0	31	217	8	5	6673	5	ABCA13	7	48316041	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	390861	48316041	110822622	888	109884											
IKZF1	10320	broad.mit.edu	37	chr7	50455154	50455154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagcatgggccttccggGcacactgtacccaggtaagc	13	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50455154	T	T	50455154	3	4	116	1	0	0	0	0	1	0	0	0	7684	1203	42	3	719	3	IKZF1	7	50455154	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2139113	50455154	108683509	889	109885											
ZNF479	90827	broad.mit.edu	37	chr7	57188238	57188238	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcttcacatttgtagggtCtctctccagtatgaattctc	6	10	5	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57188238	A	A	57188238	3	1	116	1	0	0	0	0	1	0	0	0	18060	913	32	3	694	3	ZNF479	7	57188238	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	6733084	57188238	101950425	890	109886											
ZNF479	90827	broad.mit.edu	37	chr7	57194289	57194289	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaggaattatgtactgaagTtatcctcacccagggagacc	9	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57194289	A	A	57194289	1	1	116	0	1	0	0	0	0	0	0	0	18060	1740	60	5		5	ZNF479	7	57194289	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	6051	57194289	101944374	891	109887											
ZNF716	441234	broad.mit.edu	37	chr7	57522349	57522349	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctttctctcttttctaagAtgattttggtaatttctgct	6	8	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57522349	G	G	57522349	1	3	116	0	1	0	0	0	0	0	0	0	18247	348	12	5		5	ZNF716	7	57522349	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	328060	57522349	101616314	892	109888											
ZNF679	168417	broad.mit.edu	37	chr7	63726798	63726798	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaacataggagaattcatActggagaaaaaccctacaca	6	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63726798	G	G	63726798	3	3	116	1	0	0	0	0	1	0	0	0	18213	391	14	5	801	5	ZNF679	7	63726798	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	6204449	63726798	95411865	893	109889											
ZNF680	340252	broad.mit.edu	37	chr7	64004766	64004766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccaggcattgccactcCtccagagagaattctatggc	10	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64004766	A	A	64004766	3	1	116	1	0	0	0	0	1	0	0	0	18214	680	24	2	1652	2	ZNF680	7	64004766	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	277968	64004766	95133897	894	109890											
ZNF273	10793	broad.mit.edu	37	chr7	64388164	64388164	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaggctgtaaaagtgCggatgagcataaggtgcaca	13	5	0	2	rs148564376	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64388164	T	T	64388164	3	4	116	1	0	0	0	0	1	0	0	0	17934	768	27	4	472	4	ZNF273	7	64388164	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	383398	64388164	94750499	895	109891											
ZNF273	10793	broad.mit.edu	37	chr7	64388706	64388706	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagtatattctcaacccttActaaacataagataattcat	2	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64388706	T	T	64388706	3	4	116	1	0	0	0	0	1	0	0	0	17934	391	14	5	1014	5	ZNF273	7	64388706	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	542	64388706	94749957	896	109892											
C7orf42	55069	broad.mit.edu	37	chr7	66418141	66418141	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggctgtcaatcctgtctctCaaaacccagcattaaaacct	5	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66418141	G	G	66418141	1	3	116	0	1	0	0	0	0	0	0	0	2417	841	29	4		4	C7orf42	7	66418141	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2029435	66418141	92720522	897	109893											
CALN1	83698	broad.mit.edu	37	chr7	71571317	71571317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagtccagtggtcacatGgctggctttattgcactgca	11	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71571317	T	T	71571317	1	4	116	0	1	0	0	0	0	0	0	0	2617	1363	47	2		2	CALN1	7	71571317	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5153176	71571317	87567346	898	109894											
BAZ1B	9031	broad.mit.edu	37	chr7	72877186	72877186	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttgggaagtcaagaacagCaccagggaagaacttcagat	12	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72877186	G	G	72877186	1	3	116	0	1	0	0	0	0	0	0	0	1335	725	25	4		4	BAZ1B	7	72877186	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1305869	72877186	86261477	899	109895											
MLXIPL	51085	broad.mit.edu	37	chr7	73013712	73013712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggggtccctcccagaggGcagagatggggtctttcttt	14	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73013712	T	T	73013712	1	4	116	0	1	0	0	0	0	0	0	0	9730	1218	42	3		3	MLXIPL	7	73013712	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	136526	73013712	86124951	900	109896											
ELN	2006	broad.mit.edu	37	chr7	73450802	73450802	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgtagttaggcagaggtgGattcagccatagctgggggt	16	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73450802	T	T	73450802	1	4	116	0	1	0	0	0	0	0	0	0	5113	1189	41	3		3	ELN	7	73450802	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	437090	73450802	85687861	901	109897											
MAGI2	9863	broad.mit.edu	37	chr7	78131078	78131078	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctcccctgaggcacctgCacttttgtcttcatgttcac	6	15	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78131078	T	T	78131078	3	4	116	1	0	0	0	0	1	0	0	0	9283	710	25	4	3658	4	MAGI2	7	78131078	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4680276	78131078	81007585	902	109898											
HGF	3082	broad.mit.edu	37	chr7	81359038	81359038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtagccttctccttgaCcttggatgcattcagttgtt	8	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81359038	A	A	81359038	3	1	116	1	0	0	0	0	1	0	0	0	7152	507	18	3	1307	3	HGF	7	81359038	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3227960	81359038	77779625	903	109899											
CACNA2D1	781	broad.mit.edu	37	chr7	81689761	81689761	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgaagctacattcacgaAatcatcatctgagagggttt	8	8	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81689761	T	T	81689761	3	4	116	1	0	0	0	0	1	0	0	0	2574	14	1	5	2533	5	CACNA2D1	7	81689761	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	330723	81689761	77448902	904	109900											
PCLO	27445	broad.mit.edu	37	chr7	82580055	82580055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctgagctaacgtctcCtgcctcatcatgaactgggc	10	12	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82580055	A	A	82580055	3	1	116	1	0	0	0	0	1	0	0	0	11677	680	24	2	5676	2	PCLO	7	82580055	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	890294	82580055	76558608	905	109901											
GRM3	2913	broad.mit.edu	37	chr7	86394633	86394633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcactggaactgaagaatgtGggcgaatcaatgaagaccga	13	7	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86394633	A	A	86394633	3	1	116	1	0	0	0	0	1	0	0	0	6864	1348	47	4	174	4	GRM3	7	86394633	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3814578	86394633	72744030	906	109902											
DMTF1	9988	broad.mit.edu	37	chr7	86820288	86820288	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactctcctgctaccgttgActcagaaacaataacactaa	5	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86820288	T	T	86820288	3	4	116	1	0	0	0	0	1	0	0	0	4632	275	10	5	1485	5	DMTF1	7	86820288	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	425655	86820288	72318375	907	109903											
ZNF804B	219578	broad.mit.edu	37	chr7	88963101	88963101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaagtgctgcaggtttGcaaataaagatacacacctt	9	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88963101	T	T	88963101	3	4	116	1	0	0	0	0	1	0	0	0	18300	1319	46	3	819	3	ZNF804B	7	88963101	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2142813	88963101	70175562	908	109904											
STEAP2	261729	broad.mit.edu	37	chr7	89854323	89854323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaagtgttttaatgttcaGtaataggtaactgatgacca	9	4	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89854323	T	T	89854323	1	4	116	0	1	0	0	0	0	0	0	0	15396	1044	36	3		3	STEAP2	7	89854323	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	891222	89854323	69284340	909	109905											
ANKIB1	54467	broad.mit.edu	37	chr7	91948852	91948852	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattttttcttctcagtaAaaaaattacatgtaatttta	2	4	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91948852	G	G	91948852	1	3	116	0	1	0	0	0	0	0	0	0	630	29	1	5		5	ANKIB1	7	91948852	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	2094529	91948852	67189811	910	109906											
SHFM1	7979	broad.mit.edu	37	chr7	96339249	96339249	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatactggaggtcggcccagCgcttcctgcggggttagcgc	16	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96339249	G	G	96339249	1	3	116	0	1	0	0	0	0	0	0	0	14391	783	27	4		4	SHFM1	7	96339249	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	4390397	96339249	62799414	911	109907											
OCM2	4951	broad.mit.edu	37	chr7	97619369	97619369	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctctaccttggcattcctgGagcgctgctgcaatgtcatc	9	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97619369	T	T	97619369	2	4	116	1	0	0	0	0	0	0	0	1	10917	1161	41	3		3	OCM2	7	97619369	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1280120	97619369	61519294	912	109908											
TMEM130	222865	broad.mit.edu	37	chr7	98445783	98445783	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctccagcaagaaaggccCacagcacatctggcagcagc	10	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98445783	T	T	98445783	3	4	116	1	0	0	0	0	1	0	0	0	16166	594	21	4	107	4	TMEM130	7	98445783	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	826414	98445783	60692880	913	109909											
TMEM130	222865	broad.mit.edu	37	chr7	98452787	98452787	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggcctgtcacagagcagaAcagacttggggtcatcgtga	14	9	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98452787	T	T	98452787	1	4	116	0	1	0	0	0	0	0	0	0	16166	58	2	5		5	TMEM130	7	98452787	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	7004	98452787	60685876	914	109910											
TRRAP	8295	broad.mit.edu	37	chr7	98519430	98519430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctcccacgtggcctacCgtgtgctcggtaagtttggc	12	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98519430	A	A	98519430	3	1	116	1	0	0	0	0	1	0	0	0	16726	652	23	1	2755	1	TRRAP	7	98519430	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	66643	98519430	60619233	915	109911											
TRRAP	8295	broad.mit.edu	37	chr7	98545838	98545838	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttataatttctggttttcttGatcaggaaatgaagatttgc	8	4	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98545838	C	C	98545838	1	2	116	0	1	0	0	0	0	0	0	0	16726	1305	45	4		4	TRRAP	7	98545838	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	26408	98545838	60592825	916	109912											
SMURF1	57154	broad.mit.edu	37	chr7	98639927	98639927	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttttttttttccctgagatgGagtctcactctgtcgcccag	8	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98639927	C	C	98639927	1	2	116	0	1	0	0	0	0	0	0	0	14933	1189	41	4		4	SMURF1	7	98639927	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	94089	98639927	60498736	917	109913											
SMURF1	57154	broad.mit.edu	37	chr7	98643368	98643368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccccacggaatttcacCatcagccgttttttcaagtc	5	14	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98643368	A	A	98643368	3	1	116	1	0	0	0	0	1	0	0	0	14933	594	21	2	1018	2	SMURF1	7	98643368	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3441	98643368	60495295	918	109914											
PTCD1	26024	broad.mit.edu	37	chr7	99048224	99048224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggaggtgaggtccctgcCccgtctcccatgaatggggg	16	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99048224	T	T	99048224	1	4	116	0	1	0	0	0	0	0	0	0	12833	638	22	4		4	PTCD1	7	99048224	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	404856	99048224	60090439	919	109915											
CYP3A4	1576	broad.mit.edu	37	chr7	99367913	99367913	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtggaggtctccatgGttgtagaaaatgtgttaaac	12	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99367913	A	A	99367913	1	1	116	0	1	0	0	0	0	0	0	0	4211	1276	44	4		4	CYP3A4	7	99367913	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	319689	99367913	59770750	920	109916											
GAL3ST4	79690	broad.mit.edu	37	chr7	99758146	99758146	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtccagccatgccagacccCactggatgaaggatgaagac	11	12	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99758146	G	G	99758146	3	3	116	1	0	0	0	0	1	0	0	0	6262	595	21	4	598	4	GAL3ST4	7	99758146	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	390233	99758146	59380517	921	109917											
GPC2	221914	broad.mit.edu	37	chr7	99773279	99773279	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgtgagaggcagagcagGtagtcaggggggaagctgta	19	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99773279	T	T	99773279	4	4	116	1	0	0	0	0	0	1	0	0	6663	1256	44	3	1207	3	GPC2	7	99773279	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	15133	99773279	59365384	922	109918											
FBXO24	26261	broad.mit.edu	37	chr7	100184162	100184162	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atcgtaagccagatacaggcGagtgactgtcaagaaggcca	12	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100184162	C	C	100184162	1	2	116	0	1	0	0	0	0	0	0	0	5792	1073	37	4		4	FBXO24	7	100184162	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	410883	100184162	58954501	923	109919											
GIGYF1	64599	broad.mit.edu	37	chr7	100280514	100280514	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagggccacaagagctgTtgccatcacaggagaggctg	16	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100280514	C	C	100280514	1	2	116	0	1	0	0	0	0	0	0	0	6441	1740	60	5		5	GIGYF1	7	100280514	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	96352	100280514	58858149	924	109920											
ZAN	7455	broad.mit.edu	37	chr7	100336099	100336099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtctgtatgatgcaaaCatgcagctttgacattccaa	7	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100336099	A	A	100336099	3	1	116	1	0	0	0	0	1	0	0	0	17640	478	17	3	651	3	ZAN	7	100336099	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	55585	100336099	58802564	925	109921											
EPHB4	2050	broad.mit.edu	37	chr7	100403408	100403408	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtgacttggaagatggtagGataggagccacagcccccca	14	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100403408	C	C	100403408	1	2	116	0	1	0	0	0	0	0	0	0	5219	1189	41	4		4	EPHB4	7	100403408	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	67309	100403408	58735255	926	109922											
ACHE	43	broad.mit.edu	37	chr7	100488527	100488527	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggcccttccccacggtcCgaccactcattagaggaggg	13	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100488527	T	T	100488527	1	4	116	0	1	0	0	0	0	0	0	0	141	667	23	4		4	ACHE	7	100488527	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	85119	100488527	58650136	927	109923											
MUC17	140453	broad.mit.edu	37	chr7	100677490	100677490	+	Frame_Shift_Del	DEL	C	-	-													ccattaacaagtatgcctgaCagcaccacgccggtagtcag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100677490	-	-	100677490	7	5	116	1	0	1	0	1	0	0	0	0	10068	477	17	0	2803	0	MUC17	7	100677490	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	188963	100677490	58461173	928	109924											
TRIM56	81844	broad.mit.edu	37	chr7	100731029	100731029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagacccacacccaccgcGtggtggacctggtgggctac	13	16	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100731029	T	T	100731029	3	4	116	1	0	0	0	0	1	0	0	0	16655	1145	40	3	438	3	TRIM56	7	100731029	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	53539	100731029	58407634	929	109925											
TRIM56	81844	broad.mit.edu	37	chr7	100732256	100732256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctgctccccttgcagcGtggccgccctgcagagcgcg	15	16	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100732256	T	T	100732256	3	4	116	1	0	0	0	0	1	0	0	0	16655	1145	40	3	1665	3	TRIM56	7	100732256	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1227	100732256	58406407	930	109926											
ALKBH4	54784	broad.mit.edu	37	chr7	102097954	102097954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccggaaagtgacgcagaCgcggcgggcctcgatgtgtc	15	13	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102097954	A	A	102097954	3	1	116	1	0	0	0	0	1	0	0	0	529	536	19	3	116	3	ALKBH4	7	102097954	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1365698	102097954	57040709	931	109927											
RELN	5649	broad.mit.edu	37	chr7	103270408	103270408	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtccagtcgtggccaCagtatggctgaacatttcca	11	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103270408	T	T	103270408	3	4	116	1	0	0	0	0	1	0	0	0	13328	478	17	4	7885	4	RELN	7	103270408	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1172454	103270408	55868255	932	109928											
RELN	5649	broad.mit.edu	37	chr7	103389853	103389853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaagcaaaccaaagtgaGgaatgttcctgtaacttacc	7	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103389853	T	T	103389853	1	4	116	0	1	0	0	0	0	0	0	0	13328	1015	35	2		2	RELN	7	103389853	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	119445	103389853	55748810	933	109929											
CDHR3	222256	broad.mit.edu	37	chr7	105661087	105661087	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacactgatctgggcaaagTgggatgggagttgggagggc	18	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105661087	A	A	105661087	1	1	116	0	1	0	0	0	0	0	0	0	3150	1711	59	5		5	CDHR3	7	105661087	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2271234	105661087	53477576	934	109930											
PIK3CG	5294	broad.mit.edu	37	chr7	106524485	106524485	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctaatgaaatcaggcacaaCtaacttgctctctgaaaatg	7	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106524485	G	G	106524485	1	3	116	0	1	0	0	0	0	0	0	0	12011	580	20	4		4	PIK3CG	7	106524485	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	863398	106524485	52614178	935	109931											
COG5	10466	broad.mit.edu	37	chr7	107204382	107204382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgtcagcagcagaacggCtccgcccaggtggtgacgca	14	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107204382	A	A	107204382	3	1	116	1	0	0	0	0	1	0	0	0	3693	797	28	3	2621	3	COG5	7	107204382	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	679897	107204382	51934281	936	109932											
SLC26A3	1811	broad.mit.edu	37	chr7	107431524	107431524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaagcactgtgactgatGccgccgccgccaccctcacc	9	18	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107431524	T	T	107431524	3	4	116	1	0	0	0	0	1	0	0	0	14632	1319	46	3	1823	3	SLC26A3	7	107431524	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	227142	107431524	51707139	937	109933											
LAMB4	22798	broad.mit.edu	37	chr7	107708405	107708405	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctccatgactttgcctgcTgtcaaaatgtcaagactgtg	8	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107708405	G	G	107708405	1	3	116	0	1	0	0	0	0	0	0	0	8685	1595	55	5		5	LAMB4	7	107708405	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	276881	107708405	51430258	938	109934											
LAMB4	22798	broad.mit.edu	37	chr7	107720070	107720070	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcatagtgaatggcaatGgtgaagtccacaggaaaggg	14	5	1	2	rs145534341	byFrequency;by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107720070	T	T	107720070	2	4	116	1	0	0	0	0	0	0	0	1	8685	1335	47	2		2	LAMB4	7	107720070	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	11665	107720070	51418593	939	109935											
NRCAM	4897	broad.mit.edu	37	chr7	107864184	107864184	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagtccttctgcaatgCactccagtgaaagcacattt	6	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107864184	G	G	107864184	3	3	116	1	0	0	0	0	1	0	0	0	10739	710	25	4	3161	4	NRCAM	7	107864184	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	144114	107864184	51274479	940	109936											
NRCAM	4897	broad.mit.edu	37	chr7	107875139	107875139	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaggctgtaccacttaatTgtagaaaaaaaaaaatgtaa	8	4	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107875139	A	A	107875139	1	1	116	0	1	0	0	0	0	0	0	0	10739	1827	63	5		5	NRCAM	7	107875139	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	10955	107875139	51263524	941	109937											
NRCAM	4897	broad.mit.edu	37	chr7	107878202	107878202	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaggacacttacagtcttCaagaagttttgctttttccc	7	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107878202	A	A	107878202	4	1	116	1	0	0	0	0	0	1	0	0	10739	835	29	3	3942	3	NRCAM	7	107878202	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3063	107878202	51260461	942	109938											
DOCK4	9732	broad.mit.edu	37	chr7	111584999	111584999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatagcactttattttcaCaaataaaagaagaaagagat	7	5	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111584999	A	A	111584999	1	1	116	0	1	0	0	0	0	0	0	0	4729	493	17	3		3	DOCK4	7	111584999	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3706797	111584999	47553664	943	109939											
MDFIC	29969	broad.mit.edu	37	chr7	114619570	114619570	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttaatttagcccaacctcAgcgcttgcctcagcttcaga	6	13	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114619570	T	T	114619570	3	4	116	1	0	0	0	0	1	0	0	0	9498	188	7	5	610	5	MDFIC	7	114619570	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	3034571	114619570	44519093	944	109940											
ASZ1	136991	broad.mit.edu	37	chr7	117067580	117067580	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccgggcgcatgcgcaccggGgtggggcgtacgtagagatg	19	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117067580	C	C	117067580	1	2	116	0	1	0	0	0	0	0	0	0	1073	1247	43	4		4	ASZ1	7	117067580	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	2448010	117067580	42071083	945	109941											
SPAM1	6677	broad.mit.edu	37	chr7	123594257	123594257	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattgggaaaattacttcgGccaaatcacttgtggggtta	10	6	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123594257	A	A	123594257	2	1	116	1	0	0	0	0	0	0	0	1	15102	1190	42	4		4	SPAM1	7	123594257	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	6526677	123594257	35544406	946	109942											
POT1	25913	broad.mit.edu	37	chr7	124464130	124464130	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaaccacggatatgcatcTacaaaaacaaaaacaaaaaa	3	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124464130	A	A	124464130	1	1	116	0	1	0	0	0	0	0	0	0	12355	1536	53	5		5	POT1	7	124464130	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	869873	124464130	34674533	947	109943											
GRM8	2918	broad.mit.edu	37	chr7	126173450	126173450	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcagaagggctgcataGctgaaacacatgccaagtcc	11	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126173450	A	A	126173450	2	1	116	1	0	0	0	0	0	0	0	1	6869	962	34	4		4	GRM8	7	126173450	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1709320	126173450	32965213	948	109944											
SND1	27044	broad.mit.edu	37	chr7	127341286	127341287	+	Missense_Mutation	DNP	GG	TT	TT													aagaaagggatgtggagtgaGgggaacggttcacatactat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	127341287	TT	TT	127341286	3	4	116	1	0	0	0	0	1	0	0	0	14958	991	35	2	516	2	SND1	7	127341286	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	1167836	127341286	31797377	949	109945											
KLHDC10	23008	broad.mit.edu	37	chr7	129770576	129770576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacagggactcatcgaacGcttgaaatgaggatttctgg	11	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129770576	T	T	129770576	3	4	116	1	0	0	0	0	1	0	0	0	8426	1087	38	3	1357	3	KLHDC10	7	129770576	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2429290	129770576	29368087	950	109946											
CPA4	51200	broad.mit.edu	37	chr7	129933124	129933124	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttattatttggttatttcAgaaatatgggagccaaatgg	9	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129933124	T	T	129933124	1	4	116	0	1	0	0	0	0	0	0	0	3824	203	7	5		5	CPA4	7	129933124	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	162548	129933124	29205539	951	109947											
CPA4	51200	broad.mit.edu	37	chr7	129938671	129938671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaaacaacttgaaggtaCctggttctttttagctctcc	6	10	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129938671	A	A	129938671	1	1	116	0	1	0	0	0	0	0	0	0	3824	522	18	3		3	CPA4	7	129938671	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5547	129938671	29199992	952	109948											
CPA4	51200	broad.mit.edu	37	chr7	129945839	129945839	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatgtggctgggcctgggGcacgaggtgggagggttctc	20	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129945839	C	C	129945839	1	2	116	0	1	0	0	0	0	0	0	0	3824	1218	42	4		4	CPA4	7	129945839	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	7168	129945839	29192824	953	109949											
PLXNA4	91584	broad.mit.edu	37	chr7	131825444	131825444	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccagccggtgctctgaCgtggagcaagagtccatgaa	13	11	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131825444	A	A	131825444	2	1	116	1	0	0	0	0	0	0	0	1	12217	523	19	3		3	PLXNA4	7	131825444	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1879605	131825444	27313219	954	109950											
EXOC4	60412	broad.mit.edu	37	chr7	133622473	133622473	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcccttatcagaatcAtgttaagcaggcatgtgata	7	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133622473	T	T	133622473	1	4	116	0	1	0	0	0	0	0	0	0	5348	232	8	5		5	EXOC4	7	133622473	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1797029	133622473	25516190	955	109951											
AKR1B10	57016	broad.mit.edu	37	chr7	134222224	134222224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcctcctgcctgtctcCcagatggagaggctctgatg	12	13	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134222224	A	A	134222224	1	1	116	0	1	0	0	0	0	0	0	0	467	638	22	2		2	AKR1B10	7	134222224	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	599751	134222224	24916439	956	109952											
WDR91	29062	broad.mit.edu	37	chr7	134873250	134873250	+	Frame_Shift_Del	DEL	C	-	-													gaactccacagagtagacctCcccgtagtgggccctccagc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134873250	-	-	134873250	7	5	116	1	0	1	0	1	0	0	0	0	17465	864	30	0	439	0	WDR91	7	134873250	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	651026	134873250	24265413	957	109953											
NUP205	23165	broad.mit.edu	37	chr7	135263687	135263687	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgattgtaggtaattttGttatgagaaacagcatgtta	9	2	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135263687	A	A	135263687	1	1	116	0	1	0	0	0	0	0	0	0	10854	1392	48	4		4	NUP205	7	135263687	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	390437	135263687	23874976	958	109954											
LUZP6	767558	broad.mit.edu	37	chr7	135614761	135614761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacagtcttatcagcaccCtggaaaagagaggaaagggc	11	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135614761	A	A	135614761	1	1	116	0	1	0	0	0	0	0	0	0	9176	695	24	2		2	LUZP6	7	135614761	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	351074	135614761	23523902	959	109955											
AKR1D1	6718	broad.mit.edu	37	chr7	137782616	137782616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttttttttttcagccagGagatgaaatataccctagag	7	6	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137782616	T	T	137782616	3	4	116	1	0	0	0	0	1	0	0	0	473	1174	41	3	397	3	AKR1D1	7	137782616	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2167855	137782616	21356047	960	109956											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138413315	138413315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccttaatagagcatctcGttggaaataagacggcccag	10	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138413315	T	T	138413315	1	4	116	0	1	0	0	0	0	0	0	0	1174	1160	40	3		3	ATP6V0A4	7	138413315	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	630699	138413315	20725348	961	109957											
KLRG2	346689	broad.mit.edu	37	chr7	139164247	139164247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgaagttatggtcatgctActcctctacaccttggtgat	8	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139164247	T	T	139164247	1	4	116	0	1	0	0	0	0	0	0	0	8493	406	14	5		5	KLRG2	7	139164247	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	750932	139164247	19974416	962	109958											
JHDM1D	80853	broad.mit.edu	37	chr7	139827469	139827469	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatattttaacttggtatGataattaaaccaactataaa	3	4	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139827469	T	T	139827469	1	4	116	0	1	0	0	0	0	0	0	0	8018	1305	45	3		3	JHDM1D	7	139827469	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	663222	139827469	19311194	963	109959											
DENND2A	27147	broad.mit.edu	37	chr7	140221569	140221569	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcctgtctgtgcccctgcCctgtgatctttctccctact	7	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140221569	A	A	140221569	1	1	116	0	1	0	0	0	0	0	0	0	4469	638	22	2		2	DENND2A	7	140221569	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	394100	140221569	18917094	964	109960											
BRAF	673	broad.mit.edu	37	chr7	140534575	140534575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtatccattgatgcagagCtagaaacagaaaaatcagtt	9	7	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140534575	A	A	140534575	3	1	116	1	0	0	0	0	1	0	0	0	1505	797	28	3	2026	3	BRAF	7	140534575	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	313006	140534575	18604088	965	109961											
MGAM	8972	broad.mit.edu	37	chr7	141750754	141750754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttgcatgggtccctgaaGgaccagggcacctttgaggc	14	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141750754	T	T	141750754	1	4	116	0	1	0	0	0	0	0	0	0	9634	1015	35	2		2	MGAM	7	141750754	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1216179	141750754	17387909	966	109962											
TRYX3	136541	broad.mit.edu	37	chr7	141954779	141954779	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaggggggaaagaggttaGaagaaagcttcactaggccg	16	5	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141954779	A	A	141954779	1	1	116	0	1	0	0	0	0	0	0	0	16729	957	33	4		4	TRYX3	7	141954779	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	204025	141954779	17183884	967	109963											
PRSS1	5644	broad.mit.edu	37	chr7	142460067	142460067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcctaaaatcaagagaCaggacaaatggagaacttga	10	7	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142460067	A	A	142460067	1	1	116	0	1	0	0	0	0	0	0	0	12720	493	17	3		3	PRSS1	7	142460067	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	505288	142460067	16678596	968	109964											
EPHB6	2051	broad.mit.edu	37	chr7	142564194	142564194	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggctgatcctgctcccAgggactcctatccccataat	7	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142564194	G	G	142564194	1	3	116	0	1	0	0	0	0	0	0	0	5220	203	7	5		5	EPHB6	7	142564194	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	104127	142564194	16574469	969	109965											
EPHB6	2051	broad.mit.edu	37	chr7	142568609	142568609	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaagctgctgcaccacatCcagctccttcagcaacacct	6	16	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142568609	A	A	142568609	2	1	116	1	0	0	0	0	0	0	0	1	5220	845	30	3		3	EPHB6	7	142568609	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	4415	142568609	16570054	970	109966											
TRPV6	55503	broad.mit.edu	37	chr7	142574821	142574821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacggctgaagacaggatcCtcctctgcctggccctgccc	10	16	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142574821	A	A	142574821	1	1	116	0	1	0	0	0	0	0	0	0	16725	696	24	2		2	TRPV6	7	142574821	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6212	142574821	16563842	971	109967											
KEL	3792	broad.mit.edu	37	chr7	142638578	142638578	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaggggtgatcagggaCagcagacaaagaggggaacc	16	7	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142638578	G	G	142638578	1	3	116	0	1	0	0	0	0	0	0	0	8212	493	17	4		4	KEL	7	142638578	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	63757	142638578	16500085	972	109968											
KEL	3792	broad.mit.edu	37	chr7	142659377	142659377	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggtccaggaaacaccccCcgccccagttccttgatcct	9	17	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142659377	G	G	142659377	1	3	116	0	1	0	0	0	0	0	0	0	8212	638	22	4		4	KEL	7	142659377	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	20799	142659377	16479286	973	109969											
CASP2	835	broad.mit.edu	37	chr7	143000892	143000892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagatgagactgatcgtgGggttgaccaacaagatggaa	13	6	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143000892	T	T	143000892	3	4	116	1	0	0	0	0	1	0	0	0	2697	1232	43	2	1017	2	CASP2	7	143000892	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	341515	143000892	16137771	974	109970											
CLCN1	1180	broad.mit.edu	37	chr7	143020555	143020555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtccagggtgttgggagGgctgcctctgctctgggctg	18	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143020555	T	T	143020555	1	4	116	0	1	0	0	0	0	0	0	0	3493	1247	43	2		2	CLCN1	7	143020555	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	19663	143020555	16118108	975	109971											
FAM131B	9715	broad.mit.edu	37	chr7	143056562	143056562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaataagaaggtacgggcGtgctttatacatggaggagg	16	4	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143056562	T	T	143056562	1	4	116	0	1	0	0	0	0	0	0	0	5486	1160	40	3		3	FAM131B	7	143056562	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	36007	143056562	16082101	976	109972											
OR2F2	135948	broad.mit.edu	37	chr7	143632387	143632387	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttggcttatccagtgactGgtgcactcagatatccctgt	9	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143632387	A	A	143632387	4	1	116	1	0	0	0	0	0	1	0	0	11091	1357	47	4	64	4	OR2F2	7	143632387	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	575825	143632387	15506276	977	109973											
OR2A2	442361	broad.mit.edu	37	chr7	143807534	143807534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatccaatgctgaaccccCtgatctacagcctgaggaat	7	12	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143807534	A	A	143807534	3	1	116	1	0	0	0	0	1	0	0	0	11071	680	24	2	861	2	OR2A2	7	143807534	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	175147	143807534	15331129	978	109974											
OR2A7	401427	broad.mit.edu	37	chr7	143973632	143973632	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaaataggttatgacagcCtcagtcatttttcccaggct	9	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143973632	T	T	143973632	1	4	116	0	1	0	0	0	0	0	0	0	11076	696	24	4		4	OR2A7	7	143973632	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	166098	143973632	15165031	979	109975											
NOBOX	135935	broad.mit.edu	37	chr7	144101631	144101631	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaattacaggcgtgagccacAgcgctcgccccccgtactga	11	15	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144101631	T	T	144101631	1	4	116	0	1	0	0	0	0	0	0	0	10607	203	7	5		5	NOBOX	7	144101631	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	127999	144101631	15037032	980	109976											
NOBOX	135935	broad.mit.edu	37	chr7	144101933	144101933	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatctttatacaaacaaaatCagaatttaaaaattcttgcc	2	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144101933	A	A	144101933	1	1	116	0	1	0	0	0	0	0	0	0	10607	841	29	3		3	NOBOX	7	144101933	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	302	144101933	15036730	981	109977											
CNTNAP2	26047	broad.mit.edu	37	chr7	147815072	147815072	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatttgtgaggatttggtCcaatgttgttcaacagaatg	10	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147815072	A	A	147815072	1	1	116	0	1	0	0	0	0	0	0	0	3679	870	30	3		3	CNTNAP2	7	147815072	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3713139	147815072	11323591	982	109978											
C7orf33	202865	broad.mit.edu	37	chr7	148312286	148312286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgatccacccaccttggcCtctcaaagtgctgggattac	9	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148312286	A	A	148312286	1	1	116	0	1	0	0	0	0	0	0	0	2413	696	24	2		2	C7orf33	7	148312286	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	497214	148312286	10826377	983	109979											
SSPO	23145	broad.mit.edu	37	chr7	149483252	149483252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggctgagcctgcgtcGtgctggcctcttcctgctgc	13	16	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149483252	T	T	149483252	3	4	116	1	0	0	0	0	1	0	0	0	15307	1145	40	3	3406	3	SSPO	7	149483252	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1170966	149483252	9655411	984	109980											
GIMAP1	170575	broad.mit.edu	37	chr7	150416336	150416336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagatctgcattttagctGgatctctgctgtgagaagtt	11	7	2	2	rs141813224	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150416336	T	T	150416336	1	4	116	0	1	0	0	0	0	0	0	0	6443	1363	47	2		2	GIMAP1	7	150416336	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	933084	150416336	8722327	985	109981											
NOS3	4846	broad.mit.edu	37	chr7	150699246	150699246	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgaggagggcagggcctcCgggggccacagcacccagga	18	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150699246	T	T	150699246	1	4	116	0	1	0	0	0	0	0	0	0	10639	667	23	4		4	NOS3	7	150699246	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	282910	150699246	8439417	986	109982											
ABCF2	10061	broad.mit.edu	37	chr7	150912627	150912627	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgccaggacagtatcccCtgacccacccagccacagtc	9	18	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912627	A	A	150912627	1	1	116	0	1	0	0	0	0	0	0	0	66	696	24	2		2	ABCF2	7	150912627	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	213381	150912627	8226036	987	109983											
CRYGN	155051	broad.mit.edu	37	chr7	151133461	151133461	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaggttgctgtgaattcCcctctcccagaaacagaagc	10	11	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151133461	T	T	151133461	1	4	116	0	1	0	0	0	0	0	0	0	3950	638	22	4		4	CRYGN	7	151133461	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	220834	151133461	8005202	988	109984											
UBE3C	9690	broad.mit.edu	37	chr7	156971381	156971381	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatacttttttcatttttaCaggttgctgcaaaactgtaa	6	6	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156971381	T	T	156971381	1	4	116	0	1	0	0	0	0	0	0	0	17007	493	17	4		4	UBE3C	7	156971381	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5837920	156971381	2167282	989	109985											
UBE3C	9690	broad.mit.edu	37	chr7	156991052	156991052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatacagttcttccaaggcCagtttatttcttgatatgtc	6	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156991052	T	T	156991052	1	4	116	0	1	0	0	0	0	0	0	0	17007	609	21	4		4	UBE3C	7	156991052	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	19671	156991052	2147611	990	109986											
DLGAP2	9228	broad.mit.edu	37	chr8	1581255	1581255	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccagcggggactctagaGgcatacctgtcttcatccta	9	13	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1581255	A	A	1581255	1	1	116	0	1	0	0	0	0	0	0	0	4600	1015	35	4		4	DLGAP2	8	1581255	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08		1581255	144782767	991	109987											
MYOM2	9172	broad.mit.edu	37	chr8	2054354	2054354	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtaagtgatacagacGgagtgtcctccagttttgtt	11	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2054354	T	T	2054354	4	4	116	1	0	0	0	0	0	1	0	0	10186	1117	39	1	3051	1	MYOM2	8	2054354	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	473099	2054354	144309668	992	109988											
CSMD1	64478	broad.mit.edu	37	chr8	2813044	2813044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcacacgtggacactagcCtgatgggcagctgatccttt	10	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2813044	A	A	2813044	1	1	116	0	1	0	0	0	0	0	0	0	3978	696	24	2		2	CSMD1	8	2813044	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	758690	2813044	143550978	993	109989											
CSMD1	64478	broad.mit.edu	37	chr8	3000072	3000072	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgcgttgtgctcagcagGgccgcggggagatccgtgcc	16	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3000072	A	A	3000072	2	1	116	1	0	0	0	0	0	0	0	1	3978	1219	43	4		4	CSMD1	8	3000072	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	187028	3000072	143363950	994	109990											
XKR6	286046	broad.mit.edu	37	chr8	10755411	10755411	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatatttcttgcaagtgctgTttgccgcaaaccaaacttaa	6	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10755411	C	C	10755411	1	2	116	0	1	0	0	0	0	0	0	0	17562	1740	60	5		5	XKR6	8	10755411	3'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	7755339	10755411	135608611	995	109991											
CHMP7	91782	broad.mit.edu	37	chr8	23116469	23116469	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacttgaggaagctttccttGattctcacttggggcaggat	11	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23116469	A	A	23116469	1	1	116	0	1	0	0	0	0	0	0	0	3392	1305	45	4		4	CHMP7	8	23116469	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	12361058	23116469	123247553	996	109992											
DOCK5	80005	broad.mit.edu	37	chr8	25101317	25101317	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgagggcaagggaaaaaCagtgtaagttacttattaaa	11	3	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25101317	T	T	25101317	1	4	116	0	1	0	0	0	0	0	0	0	4730	493	17	4		4	DOCK5	8	25101317	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1984848	25101317	121262705	997	109993											
DOCK5	80005	broad.mit.edu	37	chr8	25226115	25226115	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcaaattcatcccatcCatggtgggtcccattctgga	7	11	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25226115	T	T	25226115	2	4	116	1	0	0	0	0	0	0	0	1	4730	581	21	4		4	DOCK5	8	25226115	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	124798	25226115	121137907	998	109994											
TEX15	56154	broad.mit.edu	37	chr8	30703267	30703267	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttataagacttgtgctttgaCacatgggttaatgatttaga	9	4	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30703267	A	A	30703267	2	1	116	1	0	0	0	0	0	0	0	1	15901	465	17	3		3	TEX15	8	30703267	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	5477152	30703267	115660755	999	109995											
NRG1	3084	broad.mit.edu	37	chr8	32505910	32505911	+	Intron	DEL	AG	-	-													tgctcctaaactttgtaagtAgagagagagagagagacgat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32505911	-	-	32505910	6	5	116	0	1	1	0	1	0	0	0	0	10742	435	15	0		0	NRG1	8	32505910	Intron	DEL	AG	TCGA-44-3918-01A-01D-1105-08	1802643	32505910	113858112	1000	109996											
FUT10	84750	broad.mit.edu	37	chr8	33246764	33246764	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggaagccagtctgtgatgCtgggggatccgtaatataca	13	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33246764	G	G	33246764	3	3	116	1	0	0	0	0	1	0	0	0	6162	797	28	4	518	4	FUT10	8	33246764	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	740854	33246764	113117258	1001	109997											
GPR124	25960	broad.mit.edu	37	chr8	37692865	37692865	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgaccagcagctccgcttCcgctgcaccaccgggaggcc	12	18	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37692865	T	T	37692865	2	4	116	1	0	0	0	0	0	0	0	1	6703	854	30	4		4	GPR124	8	37692865	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	4446101	37692865	108671157	1002	109998											
TACC1	6867	broad.mit.edu	37	chr8	38693629	38693629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgttgaaggatgtctgGggttaagaagctgaaagctg	15	3	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38693629	T	T	38693629	1	4	116	0	1	0	0	0	0	0	0	0	15620	1247	43	2		2	TACC1	8	38693629	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1000764	38693629	107670393	1003	109999											
ADAM18	8749	broad.mit.edu	37	chr8	39535050	39535050	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacaaccattaccttgtgaAcggaagtacgtatgtagaaa	8	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39535050	G	G	39535050	2	3	116	1	0	0	0	0	0	0	0	1	239	40	2	5		5	ADAM18	8	39535050	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	841421	39535050	106828972	1004	110000											
ANK1	286	broad.mit.edu	37	chr8	41525854	41525854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccttgctgcctccggtcCctgtcggcctgggagctctc	13	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41525854	A	A	41525854	3	1	116	1	0	0	0	0	1	0	0	0	620	622	22	2	662	2	ANK1	8	41525854	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1990804	41525854	104838168	1005	110001											
ANK1	286	broad.mit.edu	37	chr8	41548014	41548014	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacaggcatggccagacggTtctcccgaaatgactggaag	12	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41548014	A	A	41548014	3	1	116	1	0	0	0	0	1	0	0	0	620	1725	60	5	2053	5	ANK1	8	41548014	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	22160	41548014	104816008	1006	110002											
IKBKB	3551	broad.mit.edu	37	chr8	42146322	42146322	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctagaaaggagagtcttGctgggtgcgtggctcacgcc	15	9	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42146322	C	C	42146322	1	2	116	0	1	0	0	0	0	0	0	0	7681	1334	46	4		4	IKBKB	8	42146322	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	598308	42146322	104217700	1007	110003											
CHRNB3	1142	broad.mit.edu	37	chr8	42581163	42581163	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggtttcacttctagtcgtCtgagacgtaccttgtcacgt	10	10	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42581163	T	T	42581163	1	4	116	0	1	0	0	0	0	0	0	0	3423	928	32	4		4	CHRNB3	8	42581163	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	434841	42581163	103782859	1008	110004											
POTEA	340441	broad.mit.edu	37	chr8	43147871	43147871	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggtgaagtccccagagcgGatctcatcgtcatgctcagg	14	11	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43147871	C	C	43147871	3	2	116	1	0	0	0	0	1	0	0	0	12356	1174	41	4	246	4	POTEA	8	43147871	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	566708	43147871	103216151	1009	110005											
KIAA0146	23514	broad.mit.edu	37	chr8	48639868	48639868	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagacaggtaaggggacagGagctgtcctgaaagccctag	15	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48639868	A	A	48639868	1	1	116	0	1	0	0	0	0	0	0	0	8227	1189	41	4		4	KIAA0146	8	48639868	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5491997	48639868	97724154	1010	110006											
SNTG1	54212	broad.mit.edu	37	chr8	51449214	51449214	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacagaagaaaaaaattacGttgaatatttatcttccttt	5	6	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51449214	C	C	51449214	1	2	116	0	1	0	0	0	0	0	0	0	14988	1160	40	4		4	SNTG1	8	51449214	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2809346	51449214	94914808	1011	110007											
SNTG1	54212	broad.mit.edu	37	chr8	51449291	51449291	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcttgaggtgggagaaGcgatggtgcgacctcagact	16	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51449291	C	C	51449291	3	2	116	1	0	0	0	0	1	0	0	0	14988	962	34	4	637	4	SNTG1	8	51449291	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	77	51449291	94914731	1012	110008											
PXDNL	137902	broad.mit.edu	37	chr8	52366196	52366196	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaagtccactggacgttgCcacgtgcctggatccatcca	10	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52366196	A	A	52366196	3	1	116	1	0	0	0	0	1	0	0	0	12956	739	26	3	3315	3	PXDNL	8	52366196	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	916905	52366196	93997826	1013	110009											
CLVS1	157807	broad.mit.edu	37	chr8	62370920	62370920	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagctaatacaccctgaaTttttgccctctgaatttgga	6	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62370920	G	G	62370920	3	3	116	1	0	0	0	0	1	0	0	0	3603	1493	52	5	810	5	CLVS1	8	62370920	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	10004724	62370920	83993102	1014	110010											
ARMC1	55156	broad.mit.edu	37	chr8	66517445	66517445	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggcaatctgctagccatAaaaaataattgagagtgagt	9	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66517445	G	G	66517445	1	3	116	0	1	0	0	0	0	0	0	0	953	377	13	5		5	ARMC1	8	66517445	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	4146525	66517445	79846577	1015	110011											
CPA6	57094	broad.mit.edu	37	chr8	68334754	68334754	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctcagggacatttcttTagcaggtgcattgtgatatt	10	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68334754	C	C	68334754	2	2	116	1	0	0	0	0	0	0	0	1	3826	1741	61	5		5	CPA6	8	68334754	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	1817309	68334754	78029268	1016	110012											
PREX2	80243	broad.mit.edu	37	chr8	68999897	68999897	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtaaagctgtacacgaCgattatttcaaccagttttg	9	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68999897	T	T	68999897	1	4	116	0	1	0	0	0	0	0	0	0	12583	551	19	4		4	PREX2	8	68999897	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	665143	68999897	77364125	1017	110013											
SLCO5A1	81796	broad.mit.edu	37	chr8	70617325	70617325	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcacatccaacaataaaTagggttgaaaaacatagtaa	5	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70617325	C	C	70617325	2	2	116	1	0	0	0	0	0	0	0	1	14845	1393	49	5		5	SLCO5A1	8	70617325	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	1617428	70617325	75746697	1018	110014											
SLCO5A1	81796	broad.mit.edu	37	chr8	70706674	70706674	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaaggacttcagaaactTtataagtgatgaaaagtgga	10	3	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70706674	A	A	70706674	1	1	116	0	1	0	0	0	0	0	0	0	14845	1856	64	5		5	SLCO5A1	8	70706674	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	89349	70706674	75657348	1019	110015											
NCOA2	10499	broad.mit.edu	37	chr8	71185832	71185832	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacaaccctaaagcccagaCatctctggcagtgaacactt	6	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71185832	T	T	71185832	1	4	116	0	1	0	0	0	0	0	0	0	10324	493	17	4		4	NCOA2	8	71185832	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	479158	71185832	75178190	1020	110016											
EYA1	2138	broad.mit.edu	37	chr8	72184058	72184058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccgtccacgtgatttccCatctgaacctcgacgcaatc	7	17	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72184058	A	A	72184058	3	1	116	1	0	0	0	0	1	0	0	0	5371	594	21	2	913	2	EYA1	8	72184058	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	998226	72184058	74179964	1021	110017											
C8orf84	157869	broad.mit.edu	37	chr8	73993286	73993286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagtcctggccctgcgggGtggagtactccaggcagcca	15	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73993286	T	T	73993286	3	4	116	1	0	0	0	0	1	0	0	0	2466	1261	44	3	433	3	C8orf84	8	73993286	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1809228	73993286	72370736	1022	110018											
STAU2	27067	broad.mit.edu	37	chr8	74464373	74464373	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagatgttccattcataagGagttccctggcaattgtagc	10	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74464373	A	A	74464373	2	1	116	1	0	0	0	0	0	0	0	1	15391	1161	41	4		4	STAU2	8	74464373	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	471087	74464373	71899649	1023	110019											
HNF4G	3174	broad.mit.edu	37	chr8	76470801	76470801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgaagttgagattagccGtgtggccaatcgtgttctag	13	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76470801	T	T	76470801	3	4	116	1	0	0	0	0	1	0	0	0	7321	1145	40	3	778	3	HNF4G	8	76470801	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2006428	76470801	69893221	1024	110020											
HNF4G	3174	broad.mit.edu	37	chr8	76472578	76472578	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctttttatcttttgtaGgggcttccaatgatggcagt	10	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76472578	T	T	76472578	5	4	116	1	0	0	0	0	0	0	1	0	7321	1014	35	2	1127	2	HNF4G	8	76472578	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	1777	76472578	69891444	1025	110021											
ZFHX4	79776	broad.mit.edu	37	chr8	77616672	77616672	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgacaacgagagcgagatcAgcgagttagaggacagtgac	14	7	1	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77616672	T	T	77616672	3	4	116	1	0	0	0	0	1	0	0	0	17761	188	7	5	351	5	ZFHX4	8	77616672	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	1144094	77616672	68747350	1026	110022											
ZFHX4	79776	broad.mit.edu	37	chr8	77745557	77745557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatgctgattacctttcacTctgatgtcttctgcagaaac	7	11	4	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745557	A	A	77745557	1	1	116	0	1	0	0	0	0	0	0	0	17761	1566	54	5		5	ZFHX4	8	77745557	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	128885	77745557	68618465	1027	110023											
ZFHX4	79776	broad.mit.edu	37	chr8	77765475	77765475	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacagatggacgcactctcTgcagacctcacccaactttg	7	16	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77765475	G	G	77765475	2	3	116	1	0	0	0	0	0	0	0	1	17761	1567	55	5		5	ZFHX4	8	77765475	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	19918	77765475	68598547	1028	110024											
RALYL	138046	broad.mit.edu	37	chr8	85441840	85441840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctcagacatggatctcaCgttattgttcatatatctgg	8	8	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85441840	A	A	85441840	1	1	116	0	1	0	0	0	0	0	0	0	13128	551	19	3		3	RALYL	8	85441840	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	7676365	85441840	60922182	1029	110025											
SLC7A13	157724	broad.mit.edu	37	chr8	87226886	87226886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaaacacctgaaaagagCaaagtttgaaaaaatattgg	7	5	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87226886	A	A	87226886	1	1	116	0	1	0	0	0	0	0	0	0	14809	725	25	3		3	SLC7A13	8	87226886	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1785046	87226886	59137136	1030	110026											
CNGB3	54714	broad.mit.edu	37	chr8	87645092	87645092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccaatggtaattaaagttCgaactgcccaataataacat	5	9	0	0	rs147876778	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87645092	A	A	87645092	3	1	116	1	0	0	0	0	1	0	0	0	3633	884	31	3	1253	3	CNGB3	8	87645092	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	418206	87645092	58718930	1031	110027											
MMP16	4325	broad.mit.edu	37	chr8	89128873	89128873	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgtcatttttccttgggtCagccggaggaatagagcggt	13	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89128873	A	A	89128873	3	1	116	1	0	0	0	0	1	0	0	0	9748	826	29	3	1053	3	MMP16	8	89128873	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1483781	89128873	57235149	1032	110028											
SLC26A7	115111	broad.mit.edu	37	chr8	92330508	92330508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagcctgtgatcagcgCaatgacaactggggctgcca	12	12	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92330508	A	A	92330508	3	1	116	1	0	0	0	0	1	0	0	0	14636	710	25	3	556	3	SLC26A7	8	92330508	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3201635	92330508	54033514	1033	110029											
SLC26A7	115111	broad.mit.edu	37	chr8	92364058	92364058	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcttgtctaatatcttgCattttcgtccttatagtcat	7	8	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92364058	A	A	92364058	4	1	116	1	0	0	0	0	0	1	0	0	14636	718	25	3	1195	3	SLC26A7	8	92364058	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	33550	92364058	53999964	1034	110030											
SLC26A7	115111	broad.mit.edu	37	chr8	92401549	92401549	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaactctccctaactcaagtCtctgtttctcctacagaaga	4	13	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92401549	A	A	92401549	1	1	116	0	1	0	0	0	0	0	0	0	14636	928	32	3		3	SLC26A7	8	92401549	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	37491	92401549	53962473	1035	110031											
C8orf38	137682	broad.mit.edu	37	chr8	96044361	96044361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatattatttgcgaaatGgtgatataaggtgtttaatg	9	1	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96044361	T	T	96044361	1	4	116	0	1	0	0	0	0	0	0	0	2450	1363	47	2		2	C8orf38	8	96044361	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3642812	96044361	50319661	1036	110032											
NIPAL2	79815	broad.mit.edu	37	chr8	99208109	99208109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatacctccggtacaatgcCgaaaatcctacgtaaaagta	6	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99208109	A	A	99208109	1	1	116	0	1	0	0	0	0	0	0	0	10520	667	23	1		1	NIPAL2	8	99208109	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3163748	99208109	47155913	1037	110033											
VPS13B	157680	broad.mit.edu	37	chr8	100352770	100352770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgtgaagggggtggagGtgtctggtcacctgggtggt	19	4	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100352770	T	T	100352770	1	4	116	0	1	0	0	0	0	0	0	0	17317	1276	44	3		3	VPS13B	8	100352770	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1144661	100352770	46011252	1038	110034											
RGS22	26166	broad.mit.edu	37	chr8	101076210	101076210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaattcagaaatcaatttGttggttttagatgggtcctt	8	5	3	2	rs139754977	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101076210	T	T	101076210	3	4	116	1	0	0	0	0	1	0	0	0	13414	1368	48	3	3088	3	RGS22	8	101076210	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	723440	101076210	45287812	1039	110035											
UBR5	51366	broad.mit.edu	37	chr8	103293805	103293805	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaaatgtgaaattcactatCataaatatgcaaaattagga	5	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103293805	G	G	103293805	1	3	116	0	1	0	0	0	0	0	0	0	17031	841	29	4		4	UBR5	8	103293805	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2217595	103293805	43070217	1040	110036											
KLF10	7071	broad.mit.edu	37	chr8	103664175	103664175	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgaaaggtgcggcaatgtGaggtttggcagtatctgaga	15	4	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103664175	A	A	103664175	3	1	116	1	0	0	0	0	1	0	0	0	8409	1290	45	4	1065	4	KLF10	8	103664175	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	370370	103664175	42699847	1041	110037											
ATP6V1C1	528	broad.mit.edu	37	chr8	104065051	104065051	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttggaacgaaagaatgcGtaagcagatcaagtatattt	9	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104065051	T	T	104065051	5	4	116	1	0	0	0	0	0	0	1	0	1184	1159	40	3	492	3	ATP6V1C1	8	104065051	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	400876	104065051	42298971	1042	110038											
ZFPM2	23414	broad.mit.edu	37	chr8	106573666	106573666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccagtgggaacaacctGggggccgtttcctgggaaga	14	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106573666	T	T	106573666	3	4	116	1	0	0	0	0	1	0	0	0	17784	1357	47	2	391	2	ZFPM2	8	106573666	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2508615	106573666	39790356	1043	110039											
TRHR	7201	broad.mit.edu	37	chr8	110099840	110099840	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaccatcttacttgtactCattatttgtggcctgggcat	8	10	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110099840	T	T	110099840	2	4	116	1	0	0	0	0	0	0	0	1	16604	813	29	4		4	TRHR	8	110099840	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	3526174	110099840	36264182	1044	110040											
NUDCD1	84955	broad.mit.edu	37	chr8	110255375	110255375	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttagcaacctgtcctaCttgcctgccttcctttctgt	6	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110255375	G	G	110255375	3	3	116	1	0	0	0	0	1	0	0	0	10817	565	20	4	140	4	NUDCD1	8	110255375	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	155535	110255375	36108647	1045	110041											
NUDCD1	84955	broad.mit.edu	37	chr8	110305674	110305674	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcgaagaagtagggtagctAtagaatgttcttcagcattt	10	5	2	2	rs75876794	byFrequency;by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110305674	T	T	110305674	3	4	116	1	0	0	0	0	1	0	0	0	10817	449	16	5	1240	5	NUDCD1	8	110305674	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	50299	110305674	36058348	1046	110042											
ENY2	56943	broad.mit.edu	37	chr8	110346578	110346578	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgttctagctttctgtGtgcttaggtgcccgagctac	12	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110346578	C	C	110346578	1	2	116	0	1	0	0	0	0	0	0	0	5188	1392	48	4		4	ENY2	8	110346578	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	40904	110346578	36017444	1047	110043											
PKHD1L1	93035	broad.mit.edu	37	chr8	110455414	110455414	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgatatttctggagccGgtagcagataactgggtcta	12	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110455414	C	C	110455414	1	2	116	0	1	0	0	0	0	0	0	0	12067	1131	39	4		4	PKHD1L1	8	110455414	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	108836	110455414	35908608	1048	110044											
CSMD3	114788	broad.mit.edu	37	chr8	113241048	113241048	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaaaggcacaagaataGcaatggctacagaactacta	7	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113241048	A	A	113241048	3	1	116	1	0	0	0	0	1	0	0	0	3980	971	34	4	230	4	CSMD3	8	113241048	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2785634	113241048	33122974	1049	110045											
CSMD3	114788	broad.mit.edu	37	chr8	113246653	113246653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagaagcatgagcaggtaCtttaataagatatatgcgta	9	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113246653	A	A	113246653	3	1	116	1	0	0	0	0	1	0	0	0	3980	565	20	3	458	3	CSMD3	8	113246653	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5605	113246653	33117369	1050	110046											
CSMD3	114788	broad.mit.edu	37	chr8	113277872	113277872	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgaggcatgtatttaatgGagaggagtagtaagcatatg	13	2	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113277872	T	T	113277872	1	4	116	0	1	0	0	0	0	0	0	0	3980	1189	41	3		3	CSMD3	8	113277872	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	31219	113277872	33086150	1051	110047											
CSMD3	114788	broad.mit.edu	37	chr8	113323338	113323339	+	Missense_Mutation	DNP	CC	AA	AA													ccacactgttaagctgcccaCctgtctgactgataatatat					rs141864545		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	113323339	AA	AA	113323338	3	1	116	1	0	0	0	0	1	0	0	0	3980	507	18	3	3457	3	CSMD3	8	113323338	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	45466	113323338	33040684	1052	110048											
CSMD3	114788	broad.mit.edu	37	chr8	113648979	113648979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattataaagaacgaaggGtgtaaccatgcaactccatg	9	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113648979	T	T	113648979	1	4	116	0	1	0	0	0	0	0	0	0	3980	1276	44	3		3	CSMD3	8	113648979	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	325641	113648979	32715043	1053	110049											
CSMD3	114788	broad.mit.edu	37	chr8	113697661	113697661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtgatgttaaagccacgtCctgacattgagtggtcagcc	11	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113697661	A	A	113697661	3	1	116	1	0	0	0	0	1	0	0	0	3980	855	30	3	8895	3	CSMD3	8	113697661	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	48682	113697661	32666361	1054	110050											
CSMD3	114788	broad.mit.edu	37	chr8	113702294	113702294	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatttctggaaaaatagaaGataaaagtcaccttccaagg	7	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113702294	T	T	113702294	1	4	116	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113702294	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4633	113702294	32661728	1055	110051											
CSMD3	114788	broad.mit.edu	37	chr8	114448864	114448864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccatctacaagtcagccCacctccatccaaagcggagg	7	16	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114448864	A	A	114448864	1	1	116	0	1	0	0	0	0	0	0	0	3980	609	21	2		2	CSMD3	8	114448864	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	746570	114448864	31915158	1056	110052											
SLC30A8	169026	broad.mit.edu	37	chr8	118147720	118147720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgcttctgaattgtagGcctttactctgcaacttggg	10	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118147720	T	T	118147720	1	4	116	0	1	0	0	0	0	0	0	0	14675	1218	42	3		3	SLC30A8	8	118147720	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3698856	118147720	28216302	1057	110053											
COL14A1	7373	broad.mit.edu	37	chr8	121344352	121344352	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatataaagcaaccacttGctgacatgctgtgtttcttt	7	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121344352	C	C	121344352	1	2	116	0	1	0	0	0	0	0	0	0	3703	1334	46	4		4	COL14A1	8	121344352	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3196632	121344352	25019670	1058	110054											
ZHX1	11244	broad.mit.edu	37	chr8	124266202	124266202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttttttacatatcttgCctgtactccctgacttaggt	7	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124266202	A	A	124266202	3	1	116	1	0	0	0	0	1	0	0	0	17801	739	26	3	640	3	ZHX1	8	124266202	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2921850	124266202	22097820	1059	110055											
FBXO32	114907	broad.mit.edu	37	chr8	124545499	124545499	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctacagagacaaaaagaaTacacagctttaacatctgca	5	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124545499	A	A	124545499	1	1	116	0	1	0	0	0	0	0	0	0	5799	1421	49	5		5	FBXO32	8	124545499	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	279297	124545499	21818523	1060	110056											
FAM91A1	157769	broad.mit.edu	37	chr8	124818616	124818616	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcacgaggaaatattttGgaacatcatttggacaaatg	10	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124818616	T	T	124818616	1	4	116	0	1	0	0	0	0	0	0	0	5708	1363	47	2		2	FAM91A1	8	124818616	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	273117	124818616	21545406	1061	110057											
FER1L6	654463	broad.mit.edu	37	chr8	124989713	124989713	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtggcatgaacaggtgatCttcaaggaaatgttccctcc	11	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124989713	A	A	124989713	2	1	116	1	0	0	0	0	0	0	0	1	5872	903	32	3		3	FER1L6	8	124989713	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	171097	124989713	21374309	1062	110058											
FER1L6	654463	broad.mit.edu	37	chr8	125023085	125023085	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggatgctgcatttggaGggcacgtggatcctactatg	14	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125023085	A	A	125023085	1	1	116	0	1	0	0	0	0	0	0	0	5872	1015	35	4		4	FER1L6	8	125023085	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	33372	125023085	21340937	1063	110059											
FER1L6	654463	broad.mit.edu	37	chr8	125074234	125074234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaactcagagagccccttGcccccatcacacaggtggat	9	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125074234	T	T	125074234	3	4	116	1	0	0	0	0	1	0	0	0	5872	1319	46	3	3383	3	FER1L6	8	125074234	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	51149	125074234	21289788	1064	110060											
FER1L6	654463	broad.mit.edu	37	chr8	125078855	125078855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacacagcaccttctcctaCcctaagtcctacataacctc	2	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125078855	A	A	125078855	1	1	116	0	1	0	0	0	0	0	0	0	5872	522	18	3		3	FER1L6	8	125078855	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4621	125078855	21285167	1065	110061											
FER1L6	654463	broad.mit.edu	37	chr8	125079976	125079976	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaataaatcaagtattgTggtgtcaataatattgtctc	6	4	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125079976	C	C	125079976	1	2	116	0	1	0	0	0	0	0	0	0	5872	1711	59	5		5	FER1L6	8	125079976	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	1121	125079976	21284046	1066	110062											
FER1L6	654463	broad.mit.edu	37	chr8	125103928	125103928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattataaaagtaatgtggCcaggcacagtggctcacgtc	10	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125103928	A	A	125103928	1	1	116	0	1	0	0	0	0	0	0	0	5872	754	26	3		3	FER1L6	8	125103928	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	23952	125103928	21260094	1067	110063											
TATDN1	83940	broad.mit.edu	37	chr8	125531027	125531027	+	Intron	DEL	T	-	-													cttcaaaattacttaattcaTtttttttttggtaaaagaaa					rs76737368		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125531027	-	-	125531027	6	5	116	0	1	1	0	1	0	0	0	0	15710	1508	52	0		0	TATDN1	8	125531027	Intron	DEL	T	TCGA-44-3918-01A-01D-1105-08	427099	125531027	20832995	1068	110064											
TATDN1	83940	broad.mit.edu	37	chr8	125535238	125535238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtcagtcaagttgatacCaatatctgtagaaagcaaaa	9	6	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125535238	A	A	125535238	3	1	116	1	0	0	0	0	1	0	0	0	15710	594	21	2	909	2	TATDN1	8	125535238	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4211	125535238	20828784	1069	110065											
ADCY8	114	broad.mit.edu	37	chr8	131896902	131896902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccgcaagtcgatggtatGttctattctcttgttaattt	7	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131896902	T	T	131896902	3	4	116	1	0	0	0	0	1	0	0	0	300	1377	48	3	1782	3	ADCY8	8	131896902	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6361664	131896902	14467120	1070	110066											
TG	7038	broad.mit.edu	37	chr8	133906337	133906337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgggggcaccagtcaaaGctggaatgctgcacgcatct	13	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133906337	T	T	133906337	1	4	116	0	1	0	0	0	0	0	0	0	15936	986	34	3		3	TG	8	133906337	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2009435	133906337	12457685	1071	110067											
TG	7038	broad.mit.edu	37	chr8	133925417	133925417	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcttcctccaaggggacCactttggcacctctcccagg	9	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133925417	T	T	133925417	3	4	116	1	0	0	0	0	1	0	0	0	15936	594	21	4	4363	4	TG	8	133925417	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	19080	133925417	12438605	1072	110068											
TG	7038	broad.mit.edu	37	chr8	134025908	134025908	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaacctggggctgtgagatGtatgttctatgctgatactc	11	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134025908	C	C	134025908	3	2	116	1	0	0	0	0	1	0	0	0	15936	1377	48	4	6607	4	TG	8	134025908	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	100491	134025908	12338114	1073	110069											
FAM135B	51059	broad.mit.edu	37	chr8	139207383	139207383	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctccagcttggtatctAgagtgaagttacaagtggtg	11	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139207383	T	T	139207383	1	4	116	0	1	0	0	0	0	0	0	0	5495	435	15	5		5	FAM135B	8	139207383	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	5181475	139207383	7156639	1074	110070											
COL22A1	169044	broad.mit.edu	37	chr8	139631817	139631817	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcttcctattcctggctcTctgtgtttcctaccaatcta	4	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139631817	A	A	139631817	1	1	116	0	1	0	0	0	0	0	0	0	3713	1566	54	5		5	COL22A1	8	139631817	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	424434	139631817	6732205	1075	110071											
COL22A1	169044	broad.mit.edu	37	chr8	139737770	139737771	+	Intron	DNP	GG	TT	TT													tttgaaagaggcaaagggaaGgggacaggaggatgaggtgg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	139737771	TT	TT	139737770	1	4	116	0	1	0	0	0	0	0	0	0	3713	1015	35	2		2	COL22A1	8	139737770	Intron	DNP	GG	TCGA-44-3918-01A-01D-1105-08	105953	139737770	6626252	1076	110072											
COL22A1	169044	broad.mit.edu	37	chr8	139825017	139825017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccctggaggaacctgcatGgcttggctcccccagcccat	11	16	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139825017	A	A	139825017	1	1	116	0	1	0	0	0	0	0	0	0	3713	1363	47	4		4	COL22A1	8	139825017	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	87247	139825017	6539005	1077	110073											
CHRAC1	54108	broad.mit.edu	37	chr8	141524616	141524616	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacttagtctttgaaacattCtggttaaaaaatgattagta	6	4	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141524616	G	G	141524616	1	3	116	0	1	0	0	0	0	0	0	0	3402	928	32	4		4	CHRAC1	8	141524616	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1699599	141524616	4839406	1078	110074											
EIF2C2	27161	broad.mit.edu	37	chr8	141567245	141567245	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgtaaacatgggaggtgGgggtagcgcagaaccaactt	14	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141567245	A	A	141567245	2	1	116	1	0	0	0	0	0	0	0	1	5046	1219	43	4		4	EIF2C2	8	141567245	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	42629	141567245	4796777	1079	110075											
TSNARE1	203062	broad.mit.edu	37	chr8	143365769	143365769	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccgaggctggggcgggtaCccaccaacagcttctccttg	13	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143365769	G	G	143365769	1	3	116	0	1	0	0	0	0	0	0	0	16755	522	18	4		4	TSNARE1	8	143365769	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1798524	143365769	2998253	1080	110076											
BAI1	575	broad.mit.edu	37	chr8	143570778	143570778	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcgcacacccttggagatCgagtttgcccacatgtataa	9	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143570778	T	T	143570778	2	4	116	1	0	0	0	0	0	0	0	1	1303	874	31	4		4	BAI1	8	143570778	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	205009	143570778	2793244	1081	110077											
CYP11B1	1584	broad.mit.edu	37	chr8	143960608	143960608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcccaagtcgtacctgtGgggccaagcacgaggccgtg	13	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143960608	T	T	143960608	1	4	116	0	1	0	0	0	0	0	0	0	4178	1363	47	2		2	CYP11B1	8	143960608	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	389830	143960608	2403414	1082	110078											
ZC3H3	23144	broad.mit.edu	37	chr8	144621345	144621345	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccacgaaggcccatggtgGgaagagtagcccctccggct	14	14	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144621345	A	A	144621345	2	1	116	1	0	0	0	0	0	0	0	1	17695	1219	43	4		4	ZC3H3	8	144621345	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	660737	144621345	1742677	1083	110079											
GSDMD	79792	broad.mit.edu	37	chr8	144642025	144642025	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtggagctggcagcccCaggacaggcaaagatcgcag	15	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144642025	T	T	144642025	3	4	116	1	0	0	0	0	1	0	0	0	6885	594	21	4	302	4	GSDMD	8	144642025	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	20680	144642025	1721997	1084	110080											
PLEC	5339	broad.mit.edu	37	chr8	145006527	145006527	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acggccagggcacagctgggGagggggctgtggggttcagg	22	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145006527	A	A	145006527	1	1	116	0	1	0	0	0	0	0	0	0	12147	1189	41	4		4	PLEC	8	145006527	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	364502	145006527	1357495	1085	110081											
CYC1	1537	broad.mit.edu	37	chr8	145150838	145150838	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgcggggctggccatggctCtgcattcggctgtgagtgcc	17	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145150838	G	G	145150838	3	3	116	1	0	0	0	0	1	0	0	0	4168	912	32	4	238	4	CYC1	8	145150838	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	144311	145150838	1213184	1086	110082											
ZNF251	90987	broad.mit.edu	37	chr8	145979533	145979533	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcagcctcccaagctcctCagaggcccccactgcgaacc	8	19	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145979533	G	G	145979533	1	3	116	0	1	0	0	0	0	0	0	0	17922	841	29	4		4	ZNF251	8	145979533	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	828695	145979533	384489	1087	110083											
RPL8	6132	broad.mit.edu	37	chr8	146017336	146017336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagtgcggcgttccggcCgggcgtcccttcccctcccg	14	18	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146017336	A	A	146017336	1	1	116	0	1	0	0	0	0	0	0	0	13713	667	23	1		1	RPL8	8	146017336	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	37803	146017336	346686	1088	110084											
VLDLR	7436	broad.mit.edu	37	chr9	2650283	2650283	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttaagctcttgggggcaagGactcaggtcttcaacatgta	11	8	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2650283	T	T	2650283	1	4	116	0	1	0	0	0	0	0	0	0	17301	1189	41	3		3	VLDLR	9	2650283	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08		2650283	138563148	1089	110085											
AK3	50808	broad.mit.edu	37	chr9	4719353	4719353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagaaaaaagaaaggaagTatggggtgggggtggggcgg	21	1	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4719353	A	A	4719353	1	1	116	0	1	0	0	0	0	0	0	0	441	1653	57	5		5	AK3	9	4719353	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2069070	4719353	136494078	1090	110086											
RLN1	6013	broad.mit.edu	37	chr9	5339540	5339540	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgggagctctcacctgcCactggtctaggtgtctgagg	16	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5339540	A	A	5339540	2	1	116	1	0	0	0	0	0	0	0	1	13502	581	21	2		2	RLN1	9	5339540	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	620187	5339540	135873891	1091	110087											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5534754	5534754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttttcagctttattcaCagtgacagtccctaaggaac	6	10	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5534754	A	A	5534754	3	1	116	1	0	0	0	0	1	0	0	0	11712	478	17	3	71	3	PDCD1LG2	9	5534754	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	195214	5534754	135678677	1092	110088											
TPD52L3	89882	broad.mit.edu	37	chr9	6328619	6328619	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacatgccaggacagagacCtctgtgggcacatatgaatc	10	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6328619	G	G	6328619	2	3	116	1	0	0	0	0	0	0	0	1	16524	668	24	4		4	TPD52L3	9	6328619	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	793865	6328619	134884812	1093	110089											
GLDC	2731	broad.mit.edu	37	chr9	6534752	6534752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaataaggccggtcccagtGggaagatgtaacgcaggtca	15	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6534752	T	T	6534752	3	4	116	1	0	0	0	0	1	0	0	0	6497	1348	47	2	195	2	GLDC	9	6534752	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	206133	6534752	134678679	1094	110090											
GLDC	2731	broad.mit.edu	37	chr9	6606658	6606658	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcaacgagaaatttcctcCtcttgttgtgtctgttgaaa	8	8	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6606658	G	G	6606658	3	3	116	1	0	0	0	0	1	0	0	0	6497	681	24	4	2499	4	GLDC	9	6606658	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	71906	6606658	134606773	1095	110091											
KDM4C	23081	broad.mit.edu	37	chr9	6893233	6893233	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggaaaagttgccaaattgGtaagctatgcctcaaaaata	8	6	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6893233	C	C	6893233	5	2	116	1	0	0	0	0	0	0	1	0	8200	1275	44	4	1018	4	KDM4C	9	6893233	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	286575	6893233	134320198	1096	110092											
PTPRD	5789	broad.mit.edu	37	chr9	8633443	8633443	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagaactgatccagacccatCgtcaaactctattacctatt	5	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8633443	T	T	8633443	3	4	116	1	0	0	0	0	1	0	0	0	12907	884	31	4	5712	4	PTPRD	9	8633443	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1740210	8633443	132579988	1097	110093											
TYRP1	7306	broad.mit.edu	37	chr9	12694303	12694303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggacatgtcactgcaacGgcaatttctcaggacacaac	8	11	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12694303	T	T	12694303	3	4	116	1	0	0	0	0	1	0	0	0	16942	1116	39	1	309	1	TYRP1	9	12694303	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4060860	12694303	128519128	1098	110094											
BNC2	54796	broad.mit.edu	37	chr9	16582912	16582913	+	Intron	INS	-	AA	AA													acacacacacacacacacacINSacacacacacacacacacac							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	16582913	AA	AA	16582912	6	5	116	0	1	1	1	0	0	0	0	0	1481	493	17	0		0	BNC2	9	16582912	Intron	INS	-	TCGA-44-3918-01A-01D-1105-08	3888609	16582912	124630519	1099	110095											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18639381	18639381	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agagatactgagaatggctgGaccactcacagcagatttca	10	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18639381	C	C	18639381	3	2	116	1	0	0	0	0	1	0	0	0	274	1174	41	4	832	4	ADAMTSL1	9	18639381	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2056469	18639381	122574050	1100	110096											
RPS6	6194	broad.mit.edu	37	chr9	19376723	19376723	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctactttaaaaacatcagaAataaacgtaagcttaacagc	4	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19376723	C	C	19376723	1	2	116	0	1	0	0	0	0	0	0	0	13760	29	1	5		5	RPS6	9	19376723	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	737342	19376723	121836708	1101	110097											
IFNA13	3447	broad.mit.edu	37	chr9	21367390	21367390	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcagaattcatgaaagcgtGacctggtatatgagtcaata	11	6	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21367390	T	T	21367390	1	4	116	0	1	0	0	0	0	0	0	0	7603	1305	45	3		3	IFNA13	9	21367390	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	1990667	21367390	119846041	1102	110098											
CDKN2A	1029	broad.mit.edu	37	chr9	21968276	21968276	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaacaggcgttagaaaCctgaggtcaaagatgtgtgg	13	5	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21968276	T	T	21968276	1	4	116	0	1	0	0	0	0	0	0	0	3191	522	18	4		4	CDKN2A	9	21968276	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	600886	21968276	119245155	1103	110099											
ELAVL2	1993	broad.mit.edu	37	chr9	23705079	23705079	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcataggaaacctggaaaagGaaaataaaattaaatgtata	8	3	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23705079	T	T	23705079	1	4	116	0	1	0	0	0	0	0	0	0	5092	1189	41	3		3	ELAVL2	9	23705079	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1736803	23705079	117508352	1104	110100											
NFX1	4799	broad.mit.edu	37	chr9	33311228	33311228	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttttcacatgcatgattGacttgtgaatttctgaaata	7	6	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33311228	C	C	33311228	1	2	116	0	1	0	0	0	0	0	0	0	10482	1305	45	4		4	NFX1	9	33311228	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	9606149	33311228	107902203	1105	110101											
AQP3	360	broad.mit.edu	37	chr9	33442495	33442495	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggccagcacacacacgaTaagggaggctgtgcctatga	12	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33442495	C	C	33442495	3	2	116	1	0	0	0	0	1	0	0	0	829	1406	49	5	372	5	AQP3	9	33442495	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	131267	33442495	107770936	1106	110102											
UBE2R2	54926	broad.mit.edu	37	chr9	33917170	33917170	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgatgacgacattgatgatGaagatgaggaggaggaagat	15	2	0	8			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33917170	A	A	33917170	3	1	116	1	0	0	0	0	1	0	0	0	16997	1291	45	4	670	4	UBE2R2	9	33917170	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	474675	33917170	107296261	1107	110103											
DNAI1	27019	broad.mit.edu	37	chr9	34485241	34485241	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggagttgaccgatgcggtGagtgagtagcctcttgttct	14	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34485241	T	T	34485241	1	4	116	0	1	0	0	0	0	0	0	0	4649	1305	45	3		3	DNAI1	9	34485241	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	568071	34485241	106728190	1108	110104											
VCP	7415	broad.mit.edu	37	chr9	35062999	35062999	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaagaagaagaaggctcCagtctcatttgctacagctc	9	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35062999	A	A	35062999	4	1	116	1	0	0	0	0	0	1	0	0	17267	603	21	2	1677	2	VCP	9	35062999	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	577758	35062999	106150432	1109	110105											
STOML2	30968	broad.mit.edu	37	chr9	35102251	35102251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattgggttgggacctaagcTagtcctggagtatgtaggga	15	5	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35102251	A	A	35102251	1	1	116	0	1	0	0	0	0	0	0	0	15432	1537	53	5		5	STOML2	9	35102251	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	39252	35102251	106111180	1110	110106											
CA9	768	broad.mit.edu	37	chr9	35676078	35676078	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagtgcaactgaccctgcctCctgggctagagatggctctg	12	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35676078	G	G	35676078	3	3	116	1	0	0	0	0	1	0	0	0	2550	855	30	4	636	4	CA9	9	35676078	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	573827	35676078	105537353	1111	110107											
TLN1	7094	broad.mit.edu	37	chr9	35699959	35699959	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtatgaggaacaagcaacGccctcccttaccagcagtac	9	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35699959	A	A	35699959	1	1	116	0	1	0	0	0	0	0	0	0	16070	1102	38	4		4	TLN1	9	35699959	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	23881	35699959	105513472	1112	110108											
TMEM8B	51754	broad.mit.edu	37	chr9	35853628	35853628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgcttttgtggagacccggGacaactacttctacattcac	8	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35853628	T	T	35853628	3	4	116	1	0	0	0	0	1	0	0	0	16338	1174	41	3	1438	3	TMEM8B	9	35853628	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	153669	35853628	105359803	1113	110109											
PAX5	5079	broad.mit.edu	37	chr9	36966699	36966699	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccggaagcgagtggccgttCggcaccggagactcctgaat	14	13	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36966699	T	T	36966699	2	4	116	1	0	0	0	0	0	0	0	1	11576	871	31	4		4	PAX5	9	36966699	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1113071	36966699	104246732	1114	110110											
EXOSC3	51010	broad.mit.edu	37	chr9	37785051	37785051	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttcggccatcgcgggctcCaccaaacaccgtttccggta	11	15	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37785051	T	T	37785051	1	4	116	0	1	0	0	0	0	0	0	0	5358	609	21	4		4	EXOSC3	9	37785051	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	818352	37785051	103428380	1115	110111											
CNTNAP3	79937	broad.mit.edu	37	chr9	39178102	39178102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagactgagtaccaacaaaTgtaaacagattttttttaac	5	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39178102	A	A	39178102	1	1	116	0	1	0	0	0	0	0	0	0	3680	1479	51	5		5	CNTNAP3	9	39178102	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	1393051	39178102	102035329	1116	110112											
FAM75A3	727830	broad.mit.edu	37	chr9	40702836	40702836	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagccaagcatcctcaggatCtggcctccaccccatcacca	6	18	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702836	A	A	40702836	3	1	116	1	0	0	0	0	1	0	0	0	5672	912	32	3	507	3	FAM75A3	9	40702836	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1524734	40702836	100510595	1117	110113											
FAM75A6	389730	broad.mit.edu	37	chr9	43629302	43629302	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgcctctgggcctccGcctccgccctactggacact	8	20	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43629302	T	T	43629302	2	4	116	1	0	0	0	0	0	0	0	1	5674	1086	38	3		3	FAM75A6	9	43629302	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	2926466	43629302	97584129	1118	110114											
FAM75A6	389730	broad.mit.edu	37	chr9	43630825	43630825	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaagggctcctttgttgggGaggggcagtgggagggggag	22	5	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43630825	C	C	43630825	1	2	116	0	1	0	0	0	0	0	0	0	5674	1189	41	4		4	FAM75A6	9	43630825	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	1523	43630825	97582606	1119	110115											
PGM5	5239	broad.mit.edu	37	chr9	71006561	71006561	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggcagcaccctgacccaaAcctgacatatgcaacgactc	8	15	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71006561	T	T	71006561	3	4	116	1	0	0	0	0	1	0	0	0	11896	43	2	5	827	5	PGM5	9	71006561	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	27375736	71006561	70206870	1120	110116											
TMC1	117531	broad.mit.edu	37	chr9	75369809	75369809	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacgacttcaatgtaagtgtCtccacacaagtgtattggtg	9	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75369809	G	G	75369809	1	3	116	0	1	0	0	0	0	0	0	0	16107	928	32	4		4	TMC1	9	75369809	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4363248	75369809	65843622	1121	110117											
FLJ46321	389763	broad.mit.edu	37	chr9	84605674	84605674	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatctcctttccttgttctGgtcctgactgcagctttgga	8	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84605674	T	T	84605674	1	4	116	0	1	0	0	0	0	0	0	0	5990	1363	47	2		2	FLJ46321	9	84605674	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	9235865	84605674	56607757	1122	110118											
GOLM1	51280	broad.mit.edu	37	chr9	88651390	88651390	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcaggcctgctgcctgCagcctgggctgaggctcact	15	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88651390	A	A	88651390	2	1	116	1	0	0	0	0	0	0	0	1	6631	697	25	3		3	GOLM1	9	88651390	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	4045716	88651390	52562041	1123	110119											
C9orf79	286234	broad.mit.edu	37	chr9	90503661	90503661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtccccaccaccacaggcCaagaatggcaagcacctcgg	10	16	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90503661	A	A	90503661	3	1	116	1	0	0	0	0	1	0	0	0	2523	594	21	2	4273	2	C9orf79	9	90503661	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1852271	90503661	50709770	1124	110120											
ROR2	4920	broad.mit.edu	37	chr9	94487290	94487290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtctgctcccccggggCagggccgaacaggtgacctt	15	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94487290	A	A	94487290	3	1	116	1	0	0	0	0	1	0	0	0	13638	710	25	3	1349	3	ROR2	9	94487290	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3983629	94487290	46726141	1125	110121											
GABBR2	9568	broad.mit.edu	37	chr9	101061687	101061687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggcccagccctggcagCtaggccactagggccaaaag	12	16	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101061687	A	A	101061687	1	1	116	0	1	0	0	0	0	0	0	0	6216	812	28	3		3	GABBR2	9	101061687	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6574397	101061687	40151744	1126	110122											
COL15A1	1306	broad.mit.edu	37	chr9	101748080	101748080	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgtgctcttcgccatcactGacgccttccagaaggtcatc	9	15	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101748080	T	T	101748080	3	4	116	1	0	0	0	0	1	0	0	0	3704	1290	45	3	344	3	COL15A1	9	101748080	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	686393	101748080	39465351	1127	110123											
COL15A1	1306	broad.mit.edu	37	chr9	101749383	101749383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggtcagtatgatactggCccaaggagagtccccccata	12	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101749383	A	A	101749383	1	1	116	0	1	0	0	0	0	0	0	0	3704	754	26	3		3	COL15A1	9	101749383	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1303	101749383	39464048	1128	110124											
GRIN3A	116443	broad.mit.edu	37	chr9	104335453	104335453	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaagggaagcagtgtggtCacctaggactcacaagtccg	13	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104335453	T	T	104335453	1	4	116	0	1	0	0	0	0	0	0	0	6849	841	29	4		4	GRIN3A	9	104335453	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	2586070	104335453	36877978	1129	110125											
GRIN3A	116443	broad.mit.edu	37	chr9	104449333	104449333	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaacttggaattattctgGgtaaggaggaggaagtcggt	16	3	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104449333	C	C	104449333	2	2	116	1	0	0	0	0	0	0	0	1	6849	1219	43	4		4	GRIN3A	9	104449333	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	113880	104449333	36764098	1130	110126											
SLC44A1	23446	broad.mit.edu	37	chr9	108136902	108136902	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatacacagccacagctatCaacagcaccaacttctgcac	5	16	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108136902	A	A	108136902	2	1	116	1	0	0	0	0	0	0	0	1	14749	816	29	3		3	SLC44A1	9	108136902	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	3687569	108136902	33076529	1131	110127											
C9orf5	23731	broad.mit.edu	37	chr9	111870813	111870813	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcttgcattccacttgaatGaaacagtcaacacatagcca	6	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111870813	A	A	111870813	3	1	116	1	0	0	0	0	1	0	0	0	2512	1294	45	4	2090	4	C9orf5	9	111870813	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3733911	111870813	29342618	1132	110128											
KIAA0368	23392	broad.mit.edu	37	chr9	114156454	114156454	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcaccttcacttctttgtGggtacttagcttcctgacaa	7	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114156454	A	A	114156454	3	1	116	1	0	0	0	0	1	0	0	0	8241	1348	47	4	2711	4	KIAA0368	9	114156454	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2285641	114156454	27056977	1133	110129											
KIAA0368	23392	broad.mit.edu	37	chr9	114176853	114176853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaatggctggggcatgatCctgcatatcagccaaactct	9	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114176853	A	A	114176853	3	1	116	1	0	0	0	0	1	0	0	0	8241	855	30	3	3804	3	KIAA0368	9	114176853	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	20399	114176853	27036578	1134	110130											
RGS3	5998	broad.mit.edu	37	chr9	116276913	116276913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctggcccccaaagtcctGgtgttccctgtctttgttca	8	15	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116276913	T	T	116276913	2	4	116	1	0	0	0	0	0	0	0	1	13415	1335	47	2		2	RGS3	9	116276913	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	2100060	116276913	24936518	1135	110131											
DFNB31	25861	broad.mit.edu	37	chr9	117165337	117165337	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caatctgagtgtccacttctCggattaggaaagctgaggcc	11	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117165337	T	T	117165337	1	4	116	0	1	0	0	0	0	0	0	0	4495	899	31	4		4	DFNB31	9	117165337	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	888424	117165337	24048094	1136	110132											
TNFSF8	944	broad.mit.edu	37	chr9	117666507	117666507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatgatgaagtacaaacCagggaattggatcaccagat	10	7	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117666507	A	A	117666507	3	1	116	1	0	0	0	0	1	0	0	0	16434	594	21	2	299	2	TNFSF8	9	117666507	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	501170	117666507	23546924	1137	110133											
ASTN2	23245	broad.mit.edu	37	chr9	119943389	119943389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccatacaacaaacaggCtgcatacactaccaagaaag	5	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119943389	A	A	119943389	1	1	116	0	1	0	0	0	0	0	0	0	1069	812	28	3		3	ASTN2	9	119943389	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2276882	119943389	21270042	1138	110134											
ASTN2	23245	broad.mit.edu	37	chr9	120176788	120176788	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttacccagggtgaagaaGggcagctcggtgttgtccag	15	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120176788	T	T	120176788	2	4	116	1	0	0	0	0	0	0	0	1	1069	987	35	2		2	ASTN2	9	120176788	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	233399	120176788	21036643	1139	110135											
STRBP	55342	broad.mit.edu	37	chr9	125920215	125920215	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattattaagttccctaagtTgtaatgagagatgaatccca	7	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125920215	A	A	125920215	1	1	116	0	1	0	0	0	0	0	0	0	15445	1827	63	5		5	STRBP	9	125920215	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	5743427	125920215	15293216	1140	110136											
NR5A1	2516	broad.mit.edu	37	chr9	127263080	127263080	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatcctttccaaacaaatctGaccgctctctcccctgctca	4	17	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127263080	C	C	127263080	1	2	116	0	1	0	0	0	0	0	0	0	10730	1305	45	4		4	NR5A1	9	127263080	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1342865	127263080	13950351	1141	110137											
SH2D3C	10044	broad.mit.edu	37	chr9	130509559	130509559	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcgacgtactgtggagCagacaccatcatgggcaggg	16	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130509559	A	A	130509559	1	1	116	0	1	0	0	0	0	0	0	0	14347	725	25	3		3	SH2D3C	9	130509559	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3246479	130509559	10703872	1142	110138											
ENG	2022	broad.mit.edu	37	chr9	130605503	130605503	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccacaggctgaaggtcaCaatggactgtttctgcaaga	12	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130605503	T	T	130605503	3	4	116	1	0	0	0	0	1	0	0	0	5159	478	17	4	1969	4	ENG	9	130605503	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	95944	130605503	10607928	1143	110139											
SPTAN1	6709	broad.mit.edu	37	chr9	131369912	131369912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttggatcaatggaatacGggggttggtgtcctcagatg	15	6	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131369912	T	T	131369912	3	4	116	1	0	0	0	0	1	0	0	0	15235	1116	39	1	4198	1	SPTAN1	9	131369912	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	764409	131369912	9843519	1144	110140											
CCBL1	883	broad.mit.edu	37	chr9	131605146	131605146	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacctggacttcggcctgttTagaaaaactggacaaccggc	11	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131605146	A	A	131605146	1	1	116	0	1	0	0	0	0	0	0	0	2758	1769	61	5		5	CCBL1	9	131605146	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	235234	131605146	9608285	1145	110141											
LAMC3	10319	broad.mit.edu	37	chr9	133951287	133951287	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcctccaacaccagctaCgcgcttctctggaatctgct	7	17	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133951287	T	T	133951287	2	4	116	1	0	0	0	0	0	0	0	1	8688	547	19	4		4	LAMC3	9	133951287	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	2346141	133951287	7262144	1146	110142											
BAT2L1	84726	broad.mit.edu	37	chr9	134354682	134354682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctcccgtattcctcctcGatttgcaaaaaagcagaaca	5	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134354682	T	T	134354682	3	4	116	1	0	0	0	0	1	0	0	0	1325	1058	37	3	4872	3	BAT2L1	9	134354682	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	403395	134354682	6858749	1147	110143											
NTNG2	84628	broad.mit.edu	37	chr9	135042221	135042221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagactgcgcagccatGctgcatctgctggcgctctt	11	14	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135042221	T	T	135042221	3	4	116	1	0	0	0	0	1	0	0	0	10800	1319	46	3	5	3	NTNG2	9	135042221	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	687539	135042221	6171210	1148	110144											
DDX31	64794	broad.mit.edu	37	chr9	135521285	135521285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagatcagtgctcacctcCtgctccatgccgccatgcag	11	15	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135521285	A	A	135521285	3	1	116	1	0	0	0	0	1	0	0	0	4389	680	24	2	902	2	DDX31	9	135521285	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	479064	135521285	5692146	1149	110145											
C9orf98	158067	broad.mit.edu	37	chr9	135602757	135602757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagtgttatccctgcagtGtttccaccatggcattggtc	9	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135602757	T	T	135602757	1	4	116	0	1	0	0	0	0	0	0	0	2535	1392	48	3		3	C9orf98	9	135602757	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	81472	135602757	5610674	1150	110146											
GTF3C5	9328	broad.mit.edu	37	chr9	135933328	135933328	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagccatccgacggcagTgaaaacgaaatggagacaga	11	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135933328	C	C	135933328	2	2	116	1	0	0	0	0	0	0	0	1	6941	1693	59	5		5	GTF3C5	9	135933328	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	330571	135933328	5280103	1151	110147											
SURF1	6834	broad.mit.edu	37	chr9	136220842	136220842	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggtttggctggaaaaCgaatcccctgagggtggcag	15	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136220842	T	T	136220842	1	4	116	0	1	0	0	0	0	0	0	0	15521	551	19	4		4	SURF1	9	136220842	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	287514	136220842	4992589	1152	110148											
BRD3	8019	broad.mit.edu	37	chr9	136916669	136916669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccagcccctcgcctgcCccagctccctttacctgcgc	8	22	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136916669	A	A	136916669	1	1	116	0	1	0	0	0	0	0	0	0	1512	638	22	2		2	BRD3	9	136916669	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	695827	136916669	4296762	1153	110149											
SDCCAG3	10807	broad.mit.edu	37	chr9	139304459	139304459	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacattgatgggtcaatGgacgagctcgtgctgcagcg	14	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139304459	A	A	139304459	1	1	116	0	1	0	0	0	0	0	0	0	14071	1363	47	4		4	SDCCAG3	9	139304459	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2387790	139304459	1908972	1154	110150											
LCN15	389812	broad.mit.edu	37	chr9	139658873	139658873	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgaagtcaggctgcagcAgaacctcagcctgagccgtg	12	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139658873	T	T	139658873	3	4	116	1	0	0	0	0	1	0	0	0	8755	188	7	5	510	5	LCN15	9	139658873	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	354414	139658873	1554558	1155	110151											
NELF	26012	broad.mit.edu	37	chr9	140347452	140347452	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagagctggctggactcggGttggggcggagtcctgctcg	19	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140347452	A	A	140347452	1	1	116	0	1	0	0	0	0	0	0	0	10427	1276	44	4		4	NELF	9	140347452	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	688579	140347452	865979	1156	110152											
EHMT1	79813	broad.mit.edu	37	chr9	140638040	140638040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcgtttctgtgttcagGgcctcgttatcagtaatttg	10	7	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140638040	T	T	140638040	1	4	116	0	1	0	0	0	0	0	0	0	5023	1247	43	2		2	EHMT1	9	140638040	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	290588	140638040	575391	1157	110153											
EHMT1	79813	broad.mit.edu	37	chr9	140729344	140729344	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcaggccagcgcggcccAggaggcccaggaggacggct	18	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140729344	C	C	140729344	3	2	116	1	0	0	0	0	1	0	0	0	5023	188	7	5	3991	5	EHMT1	9	140729344	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	91304	140729344	484087	1158	110154											
DIP2C	22982	broad.mit.edu	37	chr10	410378	410378	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccacgatgtcgtcggcgtTgtgcctgcgcccgctgacca	14	15	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	410378	C	C	410378	3	2	116	1	0	0	0	0	1	0	0	0	4569	1812	63	5	2329	5	DIP2C	10	410378	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08		410378	135124369	1159	110155											
LARP4B	23185	broad.mit.edu	37	chr10	860865	860865	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtcaacaccaaggcgcTggaagaacaccaatactcac	8	13	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	860865	A	A	860865	1	1	116	0	1	0	0	0	0	0	0	0	8703	1595	55	5		5	LARP4B	10	860865	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	450487	860865	134673882	1160	110156											
GTPBP4	23560	broad.mit.edu	37	chr10	1046860	1046860	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctgcagtacgagaataatGatttcattatttttcttcct	5	8	2	2	rs138913470	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1046860	A	A	1046860	1	1	116	0	1	0	0	0	0	0	0	0	6947	1305	45	4		4	GTPBP4	10	1046860	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	185995	1046860	134487887	1161	110157											
ADARB2	105	broad.mit.edu	37	chr10	1313244	1313244	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacttctgtgtgaccagctgGgatatggagtctgcgaattc	12	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1313244	C	C	1313244	2	2	116	1	0	0	0	0	0	0	0	1	283	1219	43	4		4	ADARB2	10	1313244	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	266384	1313244	134221503	1162	110158											
AKR1E2	83592	broad.mit.edu	37	chr10	4879695	4879695	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggtgaagaacatcggGgtgtcaaacttcaaccatga	13	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4879695	T	T	4879695	2	4	116	1	0	0	0	0	0	0	0	1	474	1219	43	2		2	AKR1E2	10	4879695	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	3566451	4879695	130655052	1163	110159											
AKR1C4	1109	broad.mit.edu	37	chr10	5242098	5242098	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttcctgtttcactacctCtcaagcacattgatcaccaa	3	14	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5242098	G	G	5242098	1	3	116	0	1	0	0	0	0	0	0	0	472	928	32	4		4	AKR1C4	10	5242098	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	362403	5242098	130292649	1164	110160											
C10orf18	54906	broad.mit.edu	37	chr10	5782143	5782143	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaaagaaacatctacaggaGagagagatactaagccctct	8	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5782143	T	T	5782143	3	4	116	1	0	0	0	0	1	0	0	0	1607	933	33	3	2048	3	C10orf18	10	5782143	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	540045	5782143	129752604	1165	110161											
C10orf18	54906	broad.mit.edu	37	chr10	5790825	5790825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaaccctaggcagagatgGagaggtcggtgtgaattccg	15	7	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5790825	T	T	5790825	3	4	116	1	0	0	0	0	1	0	0	0	1607	1174	41	3	5487	3	C10orf18	10	5790825	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	8682	5790825	129743922	1166	110162											
RBM17	84991	broad.mit.edu	37	chr10	6143252	6143252	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagccaaaggacgaaacaaAgtacagtcctcgccccagtc	9	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6143252	G	G	6143252	3	3	116	1	0	0	0	0	1	0	0	0	13227	72	3	5	148	5	RBM17	10	6143252	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	352427	6143252	129391495	1167	110163											
SFMBT2	57713	broad.mit.edu	37	chr10	7262274	7262274	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtttaaatgaaagagaaGtaaggccccttctgagaagg	11	6	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7262274	A	A	7262274	1	1	116	0	1	0	0	0	0	0	0	0	14271	1044	36	4		4	SFMBT2	10	7262274	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1119022	7262274	128272473	1168	110164											
SEC61A2	55176	broad.mit.edu	37	chr10	12191875	12191875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtatgatcattaccattgGgcaagccattgtgtatgtca	10	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12191875	T	T	12191875	3	4	116	1	0	0	0	0	1	0	0	0	14114	1232	43	2	399	2	SEC61A2	10	12191875	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4929601	12191875	123342872	1169	110165											
OPTN	10133	broad.mit.edu	37	chr10	13175538	13175538	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgcagagtcgtcatggggcGagaacaagtgactctgacca	13	9	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13175538	T	T	13175538	2	4	116	1	0	0	0	0	0	0	0	1	10983	1045	37	3		3	OPTN	10	13175538	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	983663	13175538	122359209	1170	110166											
UCMA	221044	broad.mit.edu	37	chr10	13275671	13275671	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcaccagcagtgtgggGgtgctggggctgctgcttcg	17	11	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13275671	C	C	13275671	1	2	116	0	1	0	0	0	0	0	0	0	17052	1247	43	4		4	UCMA	10	13275671	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	100133	13275671	122259076	1171	110167											
PHYH	5264	broad.mit.edu	37	chr10	13336346	13336346	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattacaggagtgagccactGcgcccggccaaatcagcggg	14	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13336346	A	A	13336346	1	1	116	0	1	0	0	0	0	0	0	0	11959	1334	46	4		4	PHYH	10	13336346	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	60675	13336346	122198401	1172	110168											
FAM171A1	221061	broad.mit.edu	37	chr10	15254994	15254994	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcttctccttggtcatcatCatcatcgtcttcctcttcct	4	15	8	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15254994	A	A	15254994	3	1	116	1	0	0	0	0	1	0	0	0	5535	826	29	3	83	3	FAM171A1	10	15254994	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1918648	15254994	120279753	1173	110169											
ITGA8	8516	broad.mit.edu	37	chr10	15617565	15617565	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttcccagttatgaatggGcagaacaatctgcggagggt	14	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15617565	A	A	15617565	3	1	116	1	0	0	0	0	1	0	0	0	7952	1203	42	4	818	4	ITGA8	10	15617565	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	362571	15617565	119917182	1174	110170											
ITGA8	8516	broad.mit.edu	37	chr10	15714546	15714546	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaataacatcggataagtCagggataaaacttgcatcta	7	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15714546	A	A	15714546	1	1	116	0	1	0	0	0	0	0	0	0	7952	841	29	3		3	ITGA8	10	15714546	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	96981	15714546	119820201	1175	110171											
ITGA8	8516	broad.mit.edu	37	chr10	15730001	15730001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggatttgaactcgataGgttctttggttccattaact	9	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15730001	T	T	15730001	3	4	116	1	0	0	0	0	1	0	0	0	7952	1000	35	2	2923	2	ITGA8	10	15730001	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	15455	15730001	119804746	1176	110172											
VIM	7431	broad.mit.edu	37	chr10	17277926	17277926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaggaaaaacgtcagctGcttgtaaccactgtgtttat	8	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17277926	T	T	17277926	1	4	116	0	1	0	0	0	0	0	0	0	17293	1334	46	3		3	VIM	10	17277926	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1547925	17277926	118256821	1177	110173											
NEBL	10529	broad.mit.edu	37	chr10	21318564	21318564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagctttgatgactacccgCctagaaggggtgatgatagg	13	8	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21318564	A	A	21318564	1	1	116	0	1	0	0	0	0	0	0	0	10398	754	26	3		3	NEBL	10	21318564	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4040638	21318564	114216183	1178	110174											
MLLT10	8028	broad.mit.edu	37	chr10	21962656	21962656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaataaacaaagtaagcatGggcctggcagacccaaagga	11	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21962656	T	T	21962656	3	4	116	1	0	0	0	0	1	0	0	0	9719	1348	47	2	1467	2	MLLT10	10	21962656	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	644092	21962656	113572091	1179	110175											
GPR158	57512	broad.mit.edu	37	chr10	25510017	25510017	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacataaatcttcagaaagtGgacattgaccaatgctcaag	8	8	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25510017	T	T	25510017	2	4	116	1	0	0	0	0	0	0	0	1	6728	1335	47	2		2	GPR158	10	25510017	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	3547361	25510017	110024730	1180	110176											
GPR158	57512	broad.mit.edu	37	chr10	25886893	25886893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggagggcgccgaccatGgcacagccaaaggcactgcc	13	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25886893	T	T	25886893	3	4	116	1	0	0	0	0	1	0	0	0	6728	1348	47	2	2380	2	GPR158	10	25886893	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	376876	25886893	109647854	1181	110177											
GPR158	57512	broad.mit.edu	37	chr10	25887673	25887673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgaaatggagaaaaacCccactttttccttaaaggag	7	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887673	A	A	25887673	3	1	116	1	0	0	0	0	1	0	0	0	6728	623	22	2	3160	2	GPR158	10	25887673	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	780	25887673	109647074	1182	110178											
MYO3A	53904	broad.mit.edu	37	chr10	26434347	26434347	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggatctcatacatgcttGatatttgagttcagtatttt	8	5	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26434347	A	A	26434347	1	1	116	0	1	0	0	0	0	0	0	0	10170	1305	45	4		4	MYO3A	10	26434347	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	546674	26434347	109100400	1183	110179											
YME1L1	10730	broad.mit.edu	37	chr10	27400900	27400900	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaagcatccatatcaagaGagttatcatctcacttccaa	5	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27400900	C	C	27400900	1	2	116	0	1	0	0	0	0	0	0	0	17614	957	33	4		4	YME1L1	10	27400900	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	966553	27400900	108133847	1184	110180											
ZNF438	220929	broad.mit.edu	37	chr10	31137881	31137881	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcttaggggaagagctgtTgtcttgcttacagccaagat	14	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31137881	G	G	31137881	3	3	116	1	0	0	0	0	1	0	0	0	18037	1812	63	5	1041	5	ZNF438	10	31137881	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	3736981	31137881	104396866	1185	110181											
GJD4	219770	broad.mit.edu	37	chr10	35894692	35894692	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctgaaagtccacccactCccaaaagaaagggctgtgcc	9	13	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35894692	A	A	35894692	1	1	116	0	1	0	0	0	0	0	0	0	6483	870	30	3		3	GJD4	10	35894692	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4756811	35894692	99640055	1186	110182											
ANKRD30A	91074	broad.mit.edu	37	chr10	37438728	37438728	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccattgaaatgcaaaactcTgttccaaataaagcctttga	6	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37438728	A	A	37438728	2	1	116	1	0	0	0	0	0	0	0	1	658	1567	55	5		5	ANKRD30A	10	37438728	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	1544036	37438728	98096019	1187	110183											
ANKRD30A	91074	broad.mit.edu	37	chr10	37442598	37442598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaattagaaggtaagaaCcgttttttatttaaaaatca	7	3	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37442598	A	A	37442598	1	1	116	0	1	0	0	0	0	0	0	0	658	522	18	3		3	ANKRD30A	10	37442598	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3870	37442598	98092149	1188	110184											
ANKRD30A	91074	broad.mit.edu	37	chr10	37508127	37508127	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattaactaaaagggcatctCaatatagtgggcagcttaaa	8	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37508127	A	A	37508127	3	1	116	1	0	0	0	0	1	0	0	0	658	827	29	3	3453	3	ANKRD30A	10	37508127	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	65529	37508127	98026620	1189	110185											
ZNF37A	7587	broad.mit.edu	37	chr10	38385625	38385625	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggtttaaaaaatgtctatAcattcatatgaaagtagaaa	7	3	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38385625	T	T	38385625	1	4	116	0	1	0	0	0	0	0	0	0	17998	406	14	5		5	ZNF37A	10	38385625	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	877498	38385625	97149122	1190	110186											
RET	5979	broad.mit.edu	37	chr10	43602031	43602031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgactatagtaagaggggcTggtggcacggcctggctagg	17	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43602031	C	C	43602031	1	2	116	0	1	0	0	0	0	0	0	0	13343	1595	55	5		5	RET	10	43602031	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	5216406	43602031	91932716	1191	110187											
RET	5979	broad.mit.edu	37	chr10	43612207	43612207	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcacaggcacagtgccCctgggggagtctccggggcg	17	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43612207	T	T	43612207	1	4	116	0	1	0	0	0	0	0	0	0	13343	638	22	4		4	RET	10	43612207	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	10176	43612207	91922540	1192	110188											
RET	5979	broad.mit.edu	37	chr10	43615704	43615704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatcccaggtgcaccatGgggcaggcagtgcccttggg	17	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43615704	T	T	43615704	1	4	116	0	1	0	0	0	0	0	0	0	13343	1363	47	2		2	RET	10	43615704	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3497	43615704	91919043	1193	110189											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43654172	43654172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcctttaggttattatcGcactgagagagataagggca	10	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43654172	T	T	43654172	3	4	116	1	0	0	0	0	1	0	0	0	3973	1087	38	3	677	3	CSGALNACT2	10	43654172	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	38468	43654172	91880575	1194	110190											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659278	43659279	+	Intron	DNP	GG	CT	CT													gaaaattggtaactttaagtGggacttatcatttgttgtgt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	43659279	CT	CT	43659278	1	2	116	0	1	0	0	0	0	0	0	0	3973	1363	47	4		4	CSGALNACT2	10	43659278	Intron	DNP	GG	TCGA-44-3918-01A-01D-1105-08	5106	43659278	91875469	1195	110191											
FXYD4	53828	broad.mit.edu	37	chr10	43869024	43869024	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaagatctccccacaaGcaagtgtatccttggggttt	8	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43869024	T	T	43869024	1	4	116	0	1	0	0	0	0	0	0	0	6180	986	34	3		3	FXYD4	10	43869024	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	209746	43869024	91665723	1196	110192											
CHAT	1103	broad.mit.edu	37	chr10	50857714	50857714	+	Intron	DEL	C	-	-													cgaagtctcctttgaggggtCccctagggaccaccccgccc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50857714	-	-	50857714	6	5	116	0	1	1	0	1	0	0	0	0	3344	870	30	0		0	CHAT	10	50857714	Intron	DEL	C	TCGA-44-3918-01A-01D-1105-08	6988690	50857714	84677033	1197	110193											
PRKG1	5592	broad.mit.edu	37	chr10	54032160	54032160	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaatttacagactgtacaGaacatttaaggacagcaaat	7	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54032160	T	T	54032160	3	4	116	1	0	0	0	0	1	0	0	0	12628	942	33	3	1638	3	PRKG1	10	54032160	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3174446	54032160	81502587	1198	110194											
PCDH15	65217	broad.mit.edu	37	chr10	55588211	55588211	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaataaactattacaaaCgcaaaacaagggaataagat	6	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55588211	G	G	55588211	1	3	116	0	1	0	0	0	0	0	0	0	11605	551	19	4		4	PCDH15	10	55588211	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1556051	55588211	79946536	1199	110195											
FAM13C	220965	broad.mit.edu	37	chr10	61062572	61062572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcacgtacctcatttaagtCctgccgagtttcaaaagcat	7	11	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61062572	A	A	61062572	3	1	116	1	0	0	0	0	1	0	0	0	5500	855	30	3	1301	3	FAM13C	10	61062572	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5474361	61062572	74472175	1200	110196											
COL13A1	1305	broad.mit.edu	37	chr10	71665548	71665548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgttttcccagggagaCccagggatccagggctacca	11	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71665548	A	A	71665548	3	1	116	1	0	0	0	0	1	0	0	0	3702	506	18	3	987	3	COL13A1	10	71665548	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	10602976	71665548	63869199	1201	110197											
TTC18	118491	broad.mit.edu	37	chr10	75082643	75082643	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaaatatcagttgcaaagaTgtatatgctaaagatgtaag	8	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75082643	A	A	75082643	1	1	116	0	1	0	0	0	0	0	0	0	16811	1479	51	5		5	TTC18	10	75082643	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	3417095	75082643	60452104	1202	110198											
ZMYND17	118490	broad.mit.edu	37	chr10	75182482	75182482	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgcttcagtgatggcCgcaagagggaagagagctct	14	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75182482	A	A	75182482	1	1	116	0	1	0	0	0	0	0	0	0	17835	667	23	1		1	ZMYND17	10	75182482	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	99839	75182482	60352265	1203	110199											
PLAU	5328	broad.mit.edu	37	chr10	75673077	75673077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccggaggcgaccctggtGctatgtgcaggtgggcctaa	15	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75673077	T	T	75673077	3	4	116	1	0	0	0	0	1	0	0	0	12117	1319	46	3	454	3	PLAU	10	75673077	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	490595	75673077	59861670	1204	110200											
POLR3A	11128	broad.mit.edu	37	chr10	79753014	79753014	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttttccctccatagctgCaggatctaagccatctcctc	5	15	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79753014	T	T	79753014	3	4	116	1	0	0	0	0	1	0	0	0	12323	710	25	4	1492	4	POLR3A	10	79753014	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4079937	79753014	55781733	1205	110201											
SFTPD	6441	broad.mit.edu	37	chr10	81697894	81697894	+	Frame_Shift_Del	DEL	C	-	-													actgtccaccagcctgtgtgCacagcagctgtgcctccgta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81697894	-	-	81697894	7	5	116	1	0	1	0	1	0	0	0	0	14306	710	25	0	289	0	SFTPD	10	81697894	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	1944880	81697894	53836853	1206	110202											
ANXA11	311	broad.mit.edu	37	chr10	81923853	81923853	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggatgtgctcattgctgCgggaagcgaggatctcaatc	13	10	2	0	rs140133265		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81923853	A	A	81923853	3	1	116	1	0	0	0	0	1	0	0	0	716	768	27	3	644	3	ANXA11	10	81923853	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	225959	81923853	53610894	1207	110203											
OPN4	94233	broad.mit.edu	37	chr10	88414741	88414741	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaccccttcctggtccCctcctggccacacacagggg	9	20	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88414741	T	T	88414741	1	4	116	0	1	0	0	0	0	0	0	0	10976	638	22	4		4	OPN4	10	88414741	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6490888	88414741	47120006	1208	110204											
LGI1	9211	broad.mit.edu	37	chr10	95556853	95556853	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ataaattcataaaaatccagGatattgaaattctcaaaatc	3	6	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95556853	C	C	95556853	3	2	116	1	0	0	0	0	1	0	0	0	8823	1174	41	4	997	4	LGI1	10	95556853	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	7142112	95556853	39977894	1209	110205											
LGI1	9211	broad.mit.edu	37	chr10	95557293	95557293	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctcgttccaggatattcaGaggatgccatcgcgaggatc	11	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95557293	T	T	95557293	3	4	116	1	0	0	0	0	1	0	0	0	8823	933	33	3	1437	3	LGI1	10	95557293	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	440	95557293	39977454	1210	110206											
PLCE1	51196	broad.mit.edu	37	chr10	95931134	95931134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcttaacacgggacttgGgcactcctgaatgccagagc	11	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95931134	T	T	95931134	3	4	116	1	0	0	0	0	1	0	0	0	12129	1232	43	2	1986	2	PLCE1	10	95931134	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	373841	95931134	39603613	1211	110207											
TLL2	7093	broad.mit.edu	37	chr10	98156978	98156978	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagcccttgcccaagatgTtgctgctgctgcggaactcc	11	13	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98156978	C	C	98156978	3	2	116	1	0	0	0	0	1	0	0	0	16069	1725	60	5	1742	5	TLL2	10	98156978	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	2225844	98156978	37377769	1212	110208											
CRTAC1	55118	broad.mit.edu	37	chr10	99696156	99696156	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggaggggatgctggggaGgagccgctgggcccacccag	21	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99696156	A	A	99696156	1	1	116	0	1	0	0	0	0	0	0	0	3928	1015	35	4		4	CRTAC1	10	99696156	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1539178	99696156	35838591	1213	110209											
PYROXD2	84795	broad.mit.edu	37	chr10	100146994	100146994	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagattctctccaaatctggTggtgtgaggatgtctctgcc	11	9	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100146994	C	C	100146994	2	2	116	1	0	0	0	0	0	0	0	1	12975	1683	59	5		5	PYROXD2	10	100146994	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	450838	100146994	35387753	1214	110210											
ABCC2	1244	broad.mit.edu	37	chr10	101606846	101606846	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccagcctgcaacttggGttatcccacgaagtgacaga	12	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101606846	T	T	101606846	2	4	116	1	0	0	0	0	0	0	0	1	53	1248	44	3		3	ABCC2	10	101606846	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1459852	101606846	33927901	1215	110211											
CPN1	1369	broad.mit.edu	37	chr10	101829445	101829445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagatgctgatttacctgCtttgtttgcaaatttcatct	6	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101829445	A	A	101829445	1	1	116	0	1	0	0	0	0	0	0	0	3841	812	28	3		3	CPN1	10	101829445	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	222599	101829445	33705302	1216	110212											
C10orf26	54838	broad.mit.edu	37	chr10	104557873	104557873	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaagtccttgcttgggtgcCtctcagtatcccagggtccc	11	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104557873	G	G	104557873	1	3	116	0	1	0	0	0	0	0	0	0	1610	696	24	4		4	C10orf26	10	104557873	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2728428	104557873	30976874	1217	110213											
PDCD11	22984	broad.mit.edu	37	chr10	105165712	105165712	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcccattacctttgaattgGaacttctgggactactttct	7	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105165712	T	T	105165712	1	4	116	0	1	0	0	0	0	0	0	0	11711	1189	41	3		3	PDCD11	10	105165712	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	607839	105165712	30369035	1218	110214											
SORCS1	114815	broad.mit.edu	37	chr10	108377782	108377782	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagactcgcctcagctctttCtcaactactgccctccgttc	6	17	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108377782	A	A	108377782	1	1	116	0	1	0	0	0	0	0	0	0	15044	928	32	3		3	SORCS1	10	108377782	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3212070	108377782	27156965	1219	110215											
SORCS1	114815	broad.mit.edu	37	chr10	108439366	108439366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacactatttaccacagcCagcaaaccaggtaagcttct	5	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108439366	A	A	108439366	1	1	116	0	1	0	0	0	0	0	0	0	15044	609	21	2		2	SORCS1	10	108439366	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	61584	108439366	27095381	1220	110216											
SORCS1	114815	broad.mit.edu	37	chr10	108458951	108458951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgctgtggcttaggacCacatatgcctcgtgacatac	10	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108458951	A	A	108458951	1	1	116	0	1	0	0	0	0	0	0	0	15044	609	21	2		2	SORCS1	10	108458951	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	19585	108458951	27075796	1221	110217											
NRAP	4892	broad.mit.edu	37	chr10	115405652	115405652	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcttgagctggaagcgagtGataatgtgcagcgcctttca	13	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115405652	T	T	115405652	3	4	116	1	0	0	0	0	1	0	0	0	10733	1290	45	3	4278	3	NRAP	10	115405652	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6946701	115405652	20129095	1222	110218											
NRAP	4892	broad.mit.edu	37	chr10	115423132	115423132	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgacagtacggctttttcTggtgactcacaaagttatta	9	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115423132	C	C	115423132	3	2	116	1	0	0	0	0	1	0	0	0	10733	1580	55	5	5210	5	NRAP	10	115423132	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	17480	115423132	20111615	1223	110219											
DCLRE1A	9937	broad.mit.edu	37	chr10	115609774	115609774	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttatcccgagttaagaagcTgttcactttggggcagctct	10	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115609774	A	A	115609774	3	1	116	1	0	0	0	0	1	0	0	0	4327	1580	55	5	2064	5	DCLRE1A	10	115609774	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	186642	115609774	19924973	1224	110220											
TDRD1	56165	broad.mit.edu	37	chr10	115987609	115987609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtatatgtttacactcCcaagtttttcttctttacat	3	9	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115987609	A	A	115987609	1	1	116	0	1	0	0	0	0	0	0	0	15852	638	22	2		2	TDRD1	10	115987609	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	377835	115987609	19547138	1225	110221											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118204012	118204012	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgaggtggcttattttaTtgatgttctcatggtaagaa	11	4	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118204012	A	A	118204012	3	1	116	1	0	0	0	0	1	0	0	0	12247	1493	52	5	457	5	PNLIPRP3	10	118204012	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	2216403	118204012	17330735	1226	110222											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118359466	118359466	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taagtttctgaaaatacggtCctactttggaaccatcccat	6	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118359466	A	A	118359466	1	1	116	0	1	0	0	0	0	0	0	0	12245	870	30	3		3	PNLIPRP1	10	118359466	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	155454	118359466	17175281	1227	110223											
KCNK18	338567	broad.mit.edu	37	chr10	118969762	118969762	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgacatatacaaaaatgtTatgctattctttgcaaaagg	6	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969762	A	A	118969762	2	1	116	1	0	0	0	0	0	0	0	1	8135	1741	61	5		5	KCNK18	10	118969762	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	610296	118969762	16564985	1228	110224											
SFXN4	119559	broad.mit.edu	37	chr10	120907275	120907275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctacctggggatatgacCgtgtctcttaccttttaaaa	7	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120907275	A	A	120907275	1	1	116	0	1	0	0	0	0	0	0	0	14310	667	23	1		1	SFXN4	10	120907275	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1937513	120907275	14627472	1229	110225											
C10orf137	26098	broad.mit.edu	37	chr10	127414293	127414293	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcctgtctcatccaccgcAgaacagcaggaatcgtccag	9	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127414293	T	T	127414293	2	4	116	1	0	0	0	0	0	0	0	1	1605	175	7	5		5	C10orf137	10	127414293	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	6507018	127414293	8120454	1230	110226											
DOCK1	1793	broad.mit.edu	37	chr10	128769018	128769018	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaactttctttacagatcggAgacactgtgcacatcttaga	8	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128769018	T	T	128769018	2	4	116	1	0	0	0	0	0	0	0	1	4724	291	11	5		5	DOCK1	10	128769018	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	1354725	128769018	6765729	1231	110227											
DPYSL4	10570	broad.mit.edu	37	chr10	134014081	134014082	+	Intron	DNP	CC	AA	AA													caccctgccaaggctgtggcCccgacaccccaggcctctcc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	134014082	AA	AA	134014081	1	1	116	0	1	0	0	0	0	0	0	0	4789	638	22	2		2	DPYSL4	10	134014081	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	5245063	134014081	1520666	1232	110228											
INPP5A	3632	broad.mit.edu	37	chr10	134594441	134594441	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacatagactgaggtccAggggccaggctgggggacca	18	9	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134594441	G	G	134594441	1	3	116	0	1	0	0	0	0	0	0	0	7824	203	7	5		5	INPP5A	10	134594441	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	580360	134594441	940306	1233	110229											
FRG2B	441581	broad.mit.edu	37	chr10	135440169	135440169	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccttttctgtaaaggagatCtgttggaaagggggctggtc	14	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135440169	A	A	135440169	3	1	116	1	0	0	0	0	1	0	0	0	6107	912	32	3	773	3	FRG2B	10	135440169	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	845728	135440169	94578	1234	110230											
ATHL1	80162	broad.mit.edu	37	chr11	294531	294531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccaggctgcccctcacCcccaggctgcctctctccct	7	23	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	294531	A	A	294531	1	1	116	0	1	0	0	0	0	0	0	0	1108	638	22	2		2	ATHL1	11	294531	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08		294531	134711985	1235	110231											
B4GALNT4	338707	broad.mit.edu	37	chr11	381797	381797	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgggggcgtcttgaggacGggcagcccctcccagccccg	15	17	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	381797	T	T	381797	1	4	116	0	1	0	0	0	0	0	0	0	1274	1131	39	1		1	B4GALNT4	11	381797	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	87266	381797	134624719	1236	110232											
PKP3	11187	broad.mit.edu	37	chr11	397119	397119	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcagctggagcccgcggcCacctccacctacagggcctt	12	17	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	397119	G	G	397119	2	3	116	1	0	0	0	0	0	0	0	1	12081	581	21	4		4	PKP3	11	397119	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	15322	397119	134609397	1237	110233											
MUC5B	727897	broad.mit.edu	37	chr11	1271501	1271501	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caccgtgacggtgcccaccgGatccacggccaccgcctcct	10	20	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1271501	A	A	1271501	3	1	116	1	0	0	0	0	1	0	0	0	10073	1174	41	4	13522	4	MUC5B	11	1271501	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	874382	1271501	133735015	1238	110234											
MUC5B	727897	broad.mit.edu	37	chr11	1281295	1281295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacagcctgcatcctgcCcagatgtgtccagctgcagg	10	17	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1281295	A	A	1281295	3	1	116	1	0	0	0	0	1	0	0	0	10073	623	22	2	17094	2	MUC5B	11	1281295	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	9794	1281295	133725221	1239	110235											
TOLLIP	54472	broad.mit.edu	37	chr11	1298328	1298328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatccttgttccctcgctGggcttccagcacggagcgga	13	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1298328	T	T	1298328	3	4	116	1	0	0	0	0	1	0	0	0	16473	1357	47	2	62	2	TOLLIP	11	1298328	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	17033	1298328	133708188	1240	110236											
KRTAP5-3	387266	broad.mit.edu	37	chr11	1629527	1629527	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagcagccggagccacagCccccatagccggagccacag	11	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1629527	T	T	1629527	3	4	116	1	0	0	0	0	1	0	0	0	8634	739	26	4	631	4	KRTAP5-3	11	1629527	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	331199	1629527	133376989	1241	110237											
TNNT3	7140	broad.mit.edu	37	chr11	1953727	1953727	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcctaagatcccagaagggGagaaagtggacttcgatgta	12	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1953727	T	T	1953727	4	4	116	1	0	0	0	0	0	1	0	0	16455	1175	41	3	225	3	TNNT3	11	1953727	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	324200	1953727	133052789	1242	110238											
KCNQ1	3784	broad.mit.edu	37	chr11	2591810	2591810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgcagggtctgaagccaCtcaaggccgagcctgcctgc	14	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2591810	A	A	2591810	1	1	116	0	1	0	0	0	0	0	0	0	8152	580	20	3		3	KCNQ1	11	2591810	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	638083	2591810	132414706	1243	110239											
KCNQ1	3784	broad.mit.edu	37	chr11	2683345	2683345	+	Intron	SNP	G	T	T													tgtgcgtgaagggctgggctGgaggggactggagctcaagg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2683345	T	T	2683345	1	4	116	0	1	0	0	0	0	0	0	0	8152	1363	47	2		2	KCNQ1	11	2683345	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	91535	2683345	132323171	1244	110240	474	2									
KCNQ1	3784	broad.mit.edu	37	chr11	2683347	2683347	+	Intron	SNP	A	G	G													tgcgtgaagggctgggctggAggggactggagctcaaggag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2683347	G	G	2683347	1	3	116	0	1	0	0	0	0	0	0	0	8152	319	11	5		5	KCNQ1	11	2683347	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	2	2683347	132323169	1245	110241	474	2									
ART5	116969	broad.mit.edu	37	chr11	3661637	3661637	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccacaccgaaaagagcAtaagttcagagcactggaca	11	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3661637	G	G	3661637	1	3	116	0	1	0	0	0	0	0	0	0	1004	232	8	5		5	ART5	11	3661637	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	978290	3661637	131344879	1246	110242											
PGAP2	27315	broad.mit.edu	37	chr11	3844950	3844950	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgggcctaggacctggaAggagaggtcttttgggagag	17	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3844950	T	T	3844950	1	4	116	0	1	0	0	0	0	0	0	0	11873	87	3	5		5	PGAP2	11	3844950	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	183313	3844950	131161566	1247	110243											
TRIM68	55128	broad.mit.edu	37	chr11	4622416	4622416	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttgtcacatgggccttaTcttagtacagggaagagggg	14	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4622416	C	C	4622416	1	2	116	0	1	0	0	0	0	0	0	0	16666	1450	50	5		5	TRIM68	11	4622416	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	777466	4622416	130384100	1248	110244											
OR51S1	119692	broad.mit.edu	37	chr11	4869647	4869647	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatggttaatcagtgccagGaggatcatagggatatagaa	14	4	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4869647	T	T	4869647	2	4	116	1	0	0	0	0	0	0	0	1	11199	1161	41	3		3	OR51S1	11	4869647	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	247231	4869647	130136869	1249	110245											
OR51A7	119687	broad.mit.edu	37	chr11	4929530	4929530	+	Frame_Shift_Del	DEL	G	-	-													ggaagttgcttaatgtatgtGggagataagaacttgaacaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4929530	-	-	4929530	7	5	116	1	0	1	0	1	0	0	0	0	11182	1348	47	0	933	0	OR51A7	11	4929530	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	59883	4929530	130076986	1250	110246											
OR51G1	79324	broad.mit.edu	37	chr11	4945394	4945394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaagaaatagtacatgggtCcatggagagtggcatcagta	12	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4945394	A	A	4945394	3	1	116	1	0	0	0	0	1	0	0	0	11192	855	30	3	791	3	OR51G1	11	4945394	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	15864	4945394	130061122	1251	110247											
MMP26	56547	broad.mit.edu	37	chr11	5011951	5011951	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagaatggagatgcagaCatcaaggtttctttctggca	12	7	3	3	rs144183012		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5011951	T	T	5011951	2	4	116	1	0	0	0	0	0	0	0	1	9757	477	17	4		4	MMP26	11	5011951	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	66557	5011951	129994565	1252	110248											
OR52J3	119679	broad.mit.edu	37	chr11	5068575	5068575	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaaataccaggttacattCacattcttgttgccaatctc	4	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5068575	A	A	5068575	3	1	116	1	0	0	0	0	1	0	0	0	11216	826	29	3	822	3	OR52J3	11	5068575	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	56624	5068575	129937941	1253	110249											
OR52A4	390053	broad.mit.edu	37	chr11	5142299	5142299	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggttcggtagagtttcagAtggcattttataagcaatag	11	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5142299	T	T	5142299	3	4	116	1	0	0	0	0	1	0	0	0	11203	330	12	5	408	5	OR52A4	11	5142299	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	73724	5142299	129864217	1254	110250											
OR52A4	390053	broad.mit.edu	37	chr11	5142639	5142639	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgggttcatggaggcttGgctcagatttgatgatgatc	13	6	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5142639	A	A	5142639	3	1	116	1	0	0	0	0	1	0	0	0	11203	1348	47	4	748	4	OR52A4	11	5142639	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	340	5142639	129863877	1255	110251											
OR51V1	283111	broad.mit.edu	37	chr11	5221709	5221709	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtcagtgagggccagCatggacaggaagtaaaacat	13	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5221709	T	T	5221709	3	4	116	1	0	0	0	0	1	0	0	0	11201	710	25	4	746	4	OR51V1	11	5221709	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	79070	5221709	129784807	1256	110252											
HBE1	3046	broad.mit.edu	37	chr11	5290996	5290996	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctagggtaatattcaccCttcattcccatgcattgaga	7	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5290996	G	G	5290996	1	3	116	0	1	0	0	0	0	0	0	0	7046	696	24	4		4	HBE1	11	5290996	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	69287	5290996	129715520	1257	110253											
OR51I1	390063	broad.mit.edu	37	chr11	5462385	5462385	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccacaaagcgatccaagctCatggccagcagtatgcctga	10	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5462385	G	G	5462385	3	3	116	1	0	0	0	0	1	0	0	0	11194	826	29	4	588	4	OR51I1	11	5462385	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	171389	5462385	129544131	1258	110254											
OR52N5	390075	broad.mit.edu	37	chr11	5799305	5799305	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacagacatgtggtcgcagTacgtatgggagataatattg	12	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5799305	A	A	5799305	3	1	116	1	0	0	0	0	1	0	0	0	11224	1638	57	5	418	5	OR52N5	11	5799305	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	336920	5799305	129207211	1259	110255											
OR52N5	390075	broad.mit.edu	37	chr11	5799752	5799752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtacattgtgcagagtGggagggagatccatacatgt	14	5	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5799752	T	T	5799752	3	4	116	1	0	0	0	0	1	0	0	0	11224	1348	47	2	865	2	OR52N5	11	5799752	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	447	5799752	129206764	1260	110256											
DNHD1	144132	broad.mit.edu	37	chr11	6520073	6520073	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtggccctagaagaggctGtgtggctggatggacttagt	17	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6520073	A	A	6520073	3	1	116	1	0	0	0	0	1	0	0	0	4708	1377	48	4	630	4	DNHD1	11	6520073	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	720321	6520073	128486443	1261	110257											
ILK	3611	broad.mit.edu	37	chr11	6630604	6630604	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgagactggagtacaaggaaGagcagggacttcaatgaaga	14	6	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6630604	C	C	6630604	3	2	116	1	0	0	0	0	1	0	0	0	7783	933	33	4	719	4	ILK	11	6630604	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	110531	6630604	128375912	1262	110258											
SYT9	143425	broad.mit.edu	37	chr11	7441832	7441832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatgttgtcatatcctcGgaagcccattgcacactggc	9	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7441832	T	T	7441832	3	4	116	1	0	0	0	0	1	0	0	0	15600	1116	39	1	1455	1	SYT9	11	7441832	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	811228	7441832	127564684	1263	110259											
NLRP10	338322	broad.mit.edu	37	chr11	7982253	7982253	+	Silent	SNP	G	A	A													tgacgtgcttgtttcagcaaGggctccagattcctcaaagc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7982253	A	A	7982253	2	1	116	1	0	0	0	0	0	0	0	1	10567	987	35	4		4	NLRP10	11	7982253	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	540421	7982253	127024263	1264	110260	475	2									
NLRP10	338322	broad.mit.edu	37	chr11	7982257	7982257	+	Missense_Mutation	SNP	T	C	C													gtgcttgtttcagcaagggcTccagattcctcaaagccagg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7982257	C	C	7982257	3	2	116	1	0	0	0	0	1	0	0	0	10567	1551	54	5	1069	5	NLRP10	11	7982257	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	4	7982257	127024259	1265	110261	475	2									
NLRP10	338322	broad.mit.edu	37	chr11	7982963	7982963	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgctcattagtcttcttgTatgtctccaacttggatctt	6	10	6	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7982963	C	C	7982963	1	2	116	0	1	0	0	0	0	0	0	0	10567	1653	57	5		5	NLRP10	11	7982963	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	706	7982963	127023553	1266	110262											
NLRP10	338322	broad.mit.edu	37	chr11	7984715	7984715	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgggaggggagtcccaGtgccatcctgccctcccctt	13	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7984715	T	T	7984715	1	4	116	0	1	0	0	0	0	0	0	0	10567	1044	36	3		3	NLRP10	11	7984715	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1752	7984715	127021801	1267	110263											
RPL27A	6157	broad.mit.edu	37	chr11	8707067	8707067	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatctactggtcttgattcActggtgggggcagtcggtgc	15	8	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8707067	T	T	8707067	1	4	116	0	1	0	0	0	0	0	0	0	13687	174	6	5		5	RPL27A	11	8707067	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	722352	8707067	126299449	1268	110264											
DENND5A	23258	broad.mit.edu	37	chr11	9225561	9225561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttagagacgtagagagtgtCccggctaatgtcataggagt	13	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9225561	A	A	9225561	3	1	116	1	0	0	0	0	1	0	0	0	4476	855	30	3	3348	3	DENND5A	11	9225561	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	518494	9225561	125780955	1269	110265											
IPO7	10527	broad.mit.edu	37	chr11	9450370	9450370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtagcagtgtctgtctGtgtttttcattcagatcttg	10	7	6	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9450370	T	T	9450370	1	4	116	0	1	0	0	0	0	0	0	0	7867	1392	48	3		3	IPO7	11	9450370	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	224809	9450370	125556146	1270	110266											
INSC	387755	broad.mit.edu	37	chr11	15212480	15212480	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctgcattagctgctgagtCtccttgggagagtcacttat	10	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15212480	G	G	15212480	1	3	116	0	1	0	0	0	0	0	0	0	7834	928	32	4		4	INSC	11	15212480	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5762110	15212480	119794036	1271	110267											
INSC	387755	broad.mit.edu	37	chr11	15260691	15260691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagcagctctgatttcaCagtggcaacagtggacacag	13	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15260691	A	A	15260691	1	1	116	0	1	0	0	0	0	0	0	0	7834	493	17	3		3	INSC	11	15260691	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	48211	15260691	119745825	1272	110268											
SOX6	55553	broad.mit.edu	37	chr11	15994452	15994452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acatttccatttcatcctctCcattgatcatttcatttcca	1	13	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15994452	A	A	15994452	3	1	116	1	0	0	0	0	1	0	0	0	15069	855	30	3	100	3	SOX6	11	15994452	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	733761	15994452	119012064	1273	110269											
USH1C	10083	broad.mit.edu	37	chr11	17552585	17552585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccagcctcttcttcacCcgaaggctcagaaaagtggg	11	13	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17552585	A	A	17552585	1	1	116	0	1	0	0	0	0	0	0	0	17160	638	22	2		2	USH1C	11	17552585	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1558133	17552585	117453931	1274	110270											
MYOD1	4654	broad.mit.edu	37	chr11	17743008	17743008	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcaccggacgccgccccgCagtgccctgcgggtgcgaac	14	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17743008	T	T	17743008	4	4	116	1	0	0	0	0	0	1	0	0	10182	711	25	4	926	4	MYOD1	11	17743008	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	190423	17743008	117263508	1275	110271											
TPH1	7166	broad.mit.edu	37	chr11	18051103	18051103	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaatactttcgacgtttAcggtagacattgtctttgaa	8	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18051103	G	G	18051103	2	3	116	1	0	0	0	0	0	0	0	1	16525	378	14	5		5	TPH1	11	18051103	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	308095	18051103	116955413	1276	110272											
GTF2H1	2965	broad.mit.edu	37	chr11	18361254	18361254	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatatggatatattctAtagtatatcagtgaaaaaca	5	3	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18361254	G	G	18361254	1	3	116	0	1	0	0	0	0	0	0	0	6925	464	16	5		5	GTF2H1	11	18361254	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	310151	18361254	116645262	1277	110273											
PTPN5	84867	broad.mit.edu	37	chr11	18759355	18759356	+	Intron	DNP	CC	AA	AA													ctagaggcccagctgagggtCctcctcagggtgaggggatc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18759356	AA	AA	18759355	1	1	116	0	1	0	0	0	0	0	0	0	12899	870	30	3		3	PTPN5	11	18759355	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	398101	18759355	116247161	1278	110274											
E2F8	79733	broad.mit.edu	37	chr11	19256308	19256308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctgcccgaaattccactCcagggagttccacaaaacac	6	16	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19256308	A	A	19256308	3	1	116	1	0	0	0	0	1	0	0	0	4913	855	30	3	1890	3	E2F8	11	19256308	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	496953	19256308	115750208	1279	110275											
ANO5	203859	broad.mit.edu	37	chr11	22272361	22272361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaagtgtgtgattattGgagactaaatagtacgtgtt	11	3	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22272361	T	T	22272361	3	4	116	1	0	0	0	0	1	0	0	0	700	1357	47	2	1130	2	ANO5	11	22272361	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3016053	22272361	112734155	1280	110276											
ANO5	203859	broad.mit.edu	37	chr11	22279207	22279207	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagattttgaatttctttgtGatttcttcaatattacagga	7	4	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22279207	A	A	22279207	1	1	116	0	1	0	0	0	0	0	0	0	700	1305	45	4		4	ANO5	11	22279207	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6846	22279207	112727309	1281	110277											
C11orf41	25758	broad.mit.edu	37	chr11	33564725	33564725	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggtcccctcctgcaactaGagacttgctcctctcaagca	8	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33564725	C	C	33564725	3	2	116	1	0	0	0	0	1	0	0	0	1652	942	33	4	727	4	C11orf41	11	33564725	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	11285518	33564725	101441791	1282	110278											
LRRC4C	57689	broad.mit.edu	37	chr11	40137638	40137638	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagatgccatccggaacctCacgcaggtttttccgaacac	10	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40137638	A	A	40137638	4	1	116	1	0	0	0	0	0	1	0	0	9095	835	29	3	1721	3	LRRC4C	11	40137638	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	6572913	40137638	94868878	1283	110279											
ALKBH3	221120	broad.mit.edu	37	chr11	43908276	43908276	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaatagtttactcccctAgagaaagaaaatgtagtaca	6	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43908276	T	T	43908276	1	4	116	0	1	0	0	0	0	0	0	0	528	435	15	5		5	ALKBH3	11	43908276	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	3770638	43908276	91098240	1284	110280											
ALKBH3	221120	broad.mit.edu	37	chr11	43940650	43940650	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccttggatcatgggaccttGttaatcatggaaggagcgac	12	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43940650	C	C	43940650	3	2	116	1	0	0	0	0	1	0	0	0	528	1368	48	4	762	4	ALKBH3	11	43940650	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	32374	43940650	91065866	1285	110281											
MADD	8567	broad.mit.edu	37	chr11	47317027	47317027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggacacctcccctaatGttcctgtgtcttgtttcaga	8	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47317027	T	T	47317027	1	4	116	0	1	0	0	0	0	0	0	0	9240	1392	48	3		3	MADD	11	47317027	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3376377	47317027	87689489	1286	110282											
OR4A47	403253	broad.mit.edu	37	chr11	48510594	48510594	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagattgatttcaggcttgTtctttgggaataattccata	8	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48510594	A	A	48510594	3	1	116	1	0	0	0	0	1	0	0	0	11136	1725	60	5	252	5	OR4A47	11	48510594	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	1193567	48510594	86495922	1287	110283											
FOLH1	2346	broad.mit.edu	37	chr11	49168457	49168457	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcctgggaatgactcccCtgcatacttgttgtggctgc	10	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49168457	T	T	49168457	3	4	116	1	0	0	0	0	1	0	0	0	6037	681	24	4	152	4	FOLH1	11	49168457	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	657863	49168457	85838059	1288	110284											
OR4C13	283092	broad.mit.edu	37	chr11	49974729	49974729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttatcctttataccctGcatatttgtgtacatgagac	5	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49974729	T	T	49974729	3	4	116	1	0	0	0	0	1	0	0	0	11141	1319	46	3	757	3	OR4C13	11	49974729	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	806272	49974729	85031787	1289	110285											
TRIM48	79097	broad.mit.edu	37	chr11	55038012	55038012	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccgtcaaaatccgccccAtatcactgcaacacctacaa	4	16	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55038012	T	T	55038012	1	4	116	0	1	0	0	0	0	0	0	0	16648	232	8	5		5	TRIM48	11	55038012	3'UTR	SNP	A	TCGA-44-3918-01A-01D-1105-08	5063283	55038012	79968504	1290	110286											
OR4C6	219432	broad.mit.edu	37	chr11	55432961	55432961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggagcatttctttggtGgtgtggggatcatcctcctc	13	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55432961	T	T	55432961	3	4	116	1	0	0	0	0	1	0	0	0	11146	1348	47	2	321	2	OR4C6	11	55432961	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	394949	55432961	79573555	1291	110287											
OR5AS1	219447	broad.mit.edu	37	chr11	55798170	55798170	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggcatccaggaaaagcatCtctccttatgggtgtgcact	10	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55798170	A	A	55798170	2	1	116	1	0	0	0	0	0	0	0	1	11240	903	32	3		3	OR5AS1	11	55798170	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	365209	55798170	79208346	1292	110288											
OR8H3	390152	broad.mit.edu	37	chr11	55890270	55890270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattatgcccaaaaggctctGcctcgctctcatcactgggc	8	14	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55890270	T	T	55890270	3	4	116	1	0	0	0	0	1	0	0	0	11333	1319	46	3	424	3	OR8H3	11	55890270	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	92100	55890270	79116246	1293	110289											
OR5J2	282775	broad.mit.edu	37	chr11	55944578	55944578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattaatccacacaatcaGcttgaggagactgtcctttt	6	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55944578	T	T	55944578	3	4	116	1	0	0	0	0	1	0	0	0	11259	971	34	3	487	3	OR5J2	11	55944578	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	54308	55944578	79061938	1294	110290											
OR8H1	219469	broad.mit.edu	37	chr11	56058584	56058584	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaatcaaagttgatacttAacatgaatgacttcaaaagg	7	5	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56058584	T	T	56058584	1	4	116	0	1	0	0	0	0	0	0	0	11331	377	13	5		5	OR8H1	11	56058584	5'Flank	SNP	A	TCGA-44-3918-01A-01D-1105-08	114006	56058584	78947932	1295	110291											
OR5M9	390162	broad.mit.edu	37	chr11	56230095	56230096	+	Missense_Mutation	DNP	GG	TT	TT													tgctctacggattcctcagtGggtctcctgagatacatgaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	56230096	TT	TT	56230095	3	4	116	1	0	0	0	0	1	0	0	0	11271	1335	47	2	151	2	OR5M9	11	56230095	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	171511	56230095	78776421	1296	110292											
OR5M10	390167	broad.mit.edu	37	chr11	56344738	56344738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgagagagcccattaaGgaagccatacatgtaaggca	11	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56344738	T	T	56344738	3	4	116	1	0	0	0	0	1	0	0	0	11267	1000	35	2	491	2	OR5M10	11	56344738	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	114643	56344738	78661778	1297	110293											
OR9G9	504191	broad.mit.edu	37	chr11	56468589	56468589	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttctccacatgctcctcCcacctgacctctgtcacttt	4	19	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468589	A	A	56468589	2	1	116	1	0	0	0	0	0	0	0	1	11346	610	22	2		2	OR9G9	11	56468589	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	123851	56468589	78537927	1298	110294											
OR5AK2	390181	broad.mit.edu	37	chr11	56756596	56756596	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaacatttggcttttgttGatatctgttacacttctgct	6	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56756596	T	T	56756596	3	4	116	1	0	0	0	0	1	0	0	0	11236	1290	45	3	210	3	OR5AK2	11	56756596	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	288007	56756596	78249920	1299	110295											
SERPING1	710	broad.mit.edu	37	chr11	57374175	57374175	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctatcttttctccttctccTttctctagccttggccaagg	5	15	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57374175	C	C	57374175	1	2	116	0	1	0	0	0	0	0	0	0	14229	1624	56	5		5	SERPING1	11	57374175	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	617579	57374175	77632341	1300	110296											
OR1S2	219958	broad.mit.edu	37	chr11	57971092	57971092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtcacagaagaagtgtgGgagagtgttgtggtcacaga	15	5	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57971092	T	T	57971092	3	4	116	1	0	0	0	0	1	0	0	0	11067	1232	43	2	418	2	OR1S2	11	57971092	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	596917	57971092	77035424	1301	110297											
OR5AN1	390195	broad.mit.edu	37	chr11	59132758	59132758	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagctttgacagatttgcatCtgttttctacactgtggtca	8	8	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59132758	T	T	59132758	3	4	116	1	0	0	0	0	1	0	0	0	11237	913	32	4	829	4	OR5AN1	11	59132758	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1161666	59132758	75873758	1302	110298											
OR4D6	219983	broad.mit.edu	37	chr11	59225307	59225307	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatctattccctgagaaatCaagagatgaagtcagccatg	8	9	4	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59225307	A	A	59225307	3	1	116	1	0	0	0	0	1	0	0	0	11152	827	29	3	876	3	OR4D6	11	59225307	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	92549	59225307	75781209	1303	110299											
MS4A6A	64231	broad.mit.edu	37	chr11	59943065	59943065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagagcactcagaatgcttCcaaccaggctgctatgcacc	8	14	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59943065	A	A	59943065	3	1	116	1	0	0	0	0	1	0	0	0	9958	855	30	3	426	3	MS4A6A	11	59943065	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	717758	59943065	75063451	1304	110300											
MS4A14	84689	broad.mit.edu	37	chr11	60184275	60184275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgaagaccagccggccCaagagaagaaatccccgaaa	9	12	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60184275	A	A	60184275	3	1	116	1	0	0	0	0	1	0	0	0	9952	595	21	2	1852	2	MS4A14	11	60184275	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	241210	60184275	74822241	1305	110301											
MS4A8B	83661	broad.mit.edu	37	chr11	60476073	60476073	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttgggtctccattcatctCagctataacagcttttctcg	7	11	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60476073	A	A	60476073	1	1	116	0	1	0	0	0	0	0	0	0	9961	841	29	3		3	MS4A8B	11	60476073	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	291798	60476073	74530443	1306	110302											
DDB1	1642	broad.mit.edu	37	chr11	61091481	61091481	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttctacacggagatccttGagagtgacggtgccatccat	11	10	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61091481	C	C	61091481	2	2	116	1	0	0	0	0	0	0	0	1	4356	1277	45	4		4	DDB1	11	61091481	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	615408	61091481	73915035	1307	110303											
SDHAF2	54949	broad.mit.edu	37	chr11	61197628	61197628	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtggggaaaatggcggtgTctacagtgttctcgacttcg	15	7	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61197628	C	C	61197628	3	2	116	1	0	0	0	0	1	0	0	0	14077	1667	58	5	12	5	SDHAF2	11	61197628	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	106147	61197628	73808888	1308	110304											
SLC22A6	9356	broad.mit.edu	37	chr11	62749558	62749558	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcccctccctccatccaaAccttggcctgtcccaaggct	7	19	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62749558	G	G	62749558	1	3	116	0	1	0	0	0	0	0	0	0	14572	58	2	5		5	SLC22A6	11	62749558	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1551930	62749558	72256958	1309	110305											
SLC22A9	114571	broad.mit.edu	37	chr11	63137513	63137513	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttgcctctacttgaggatCaactgttcaacctcaatggc	7	11	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63137513	A	A	63137513	1	1	116	0	1	0	0	0	0	0	0	0	14575	841	29	3		3	SLC22A9	11	63137513	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	387955	63137513	71869003	1310	110306											
SLC22A11	55867	broad.mit.edu	37	chr11	64329846	64329846	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctggcctttgccctgcggGactggaggactctccagctg	14	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64329846	A	A	64329846	3	1	116	1	0	0	0	0	1	0	0	0	14555	1174	41	4	774	4	SLC22A11	11	64329846	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1192333	64329846	70676670	1311	110307											
SF3B2	10992	broad.mit.edu	37	chr11	65824773	65824773	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagtgggccccactcctaCagttttgcccatgggagccc	10	17	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65824773	T	T	65824773	3	4	116	1	0	0	0	0	1	0	0	0	14264	478	17	4	730	4	SF3B2	11	65824773	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1494927	65824773	69181743	1312	110308											
CD248	57124	broad.mit.edu	37	chr11	66082936	66082936	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcagggaagagctccggAtatttggttgagatcatagg	16	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66082936	T	T	66082936	4	4	116	1	0	0	0	0	0	1	0	0	3019	340	12	5	714	5	CD248	11	66082936	Nonsense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	258163	66082936	68923580	1313	110309											
CCS	9973	broad.mit.edu	37	chr11	66368020	66368020	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccccaggactctgaccgGgtaagtgtctgtctgggttt	14	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66368020	T	T	66368020	2	4	116	1	0	0	0	0	0	0	0	1	2982	1246	43	2		2	CCS	11	66368020	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	285084	66368020	68638496	1314	110310											
SYT12	91683	broad.mit.edu	37	chr11	66812321	66812321	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagctttgctgagcccAgaagtcatgcagatggatag	11	11	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66812321	T	T	66812321	1	4	116	0	1	0	0	0	0	0	0	0	15587	203	7	5		5	SYT12	11	66812321	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	444301	66812321	68194195	1315	110311											
CARNS1	57571	broad.mit.edu	37	chr11	67190960	67190960	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaacgcacggctgctggcaGagttggtgcgggctcgcggc	18	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67190960	A	A	67190960	3	1	116	1	0	0	0	0	1	0	0	0	2682	943	33	4	1775	4	CARNS1	11	67190960	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	378639	67190960	67815556	1316	110312											
MRGPRF	116535	broad.mit.edu	37	chr11	68773766	68773766	+	Intron	DEL	C	-	-													agggacacctgtgatgccggCtggcccccacccacagacct							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68773766	-	-	68773766	6	5	116	0	1	1	0	1	0	0	0	0	9859	812	28	0		0	MRGPRF	11	68773766	Intron	DEL	C	TCGA-44-3918-01A-01D-1105-08	1582806	68773766	66232750	1317	110313											
SLCO2B1	11309	broad.mit.edu	37	chr11	74914561	74914561	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagggaggggaggtttcaTttaagtctacctgctaggtg	15	6	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74914561	A	A	74914561	1	1	116	0	1	0	0	0	0	0	0	0	14841	1508	52	5		5	SLCO2B1	11	74914561	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	6140795	74914561	60091955	1318	110314											
UVRAG	7405	broad.mit.edu	37	chr11	75718610	75718610	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagactaatgctcagttgaCaattcgttgcaggcagttac	10	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75718610	T	T	75718610	3	4	116	1	0	0	0	0	1	0	0	0	17235	478	17	4	982	4	UVRAG	11	75718610	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	804049	75718610	59287906	1319	110315											
LRRC32	2615	broad.mit.edu	37	chr11	76370954	76370954	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtagaggcgccggaggctGgtctccaggccacccatggc	16	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76370954	T	T	76370954	2	4	116	1	0	0	0	0	0	0	0	1	9074	1335	47	2		2	LRRC32	11	76370954	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	652344	76370954	58635562	1320	110316											
TSKU	25987	broad.mit.edu	37	chr11	76507338	76507338	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attggtccgggtgccttcgcGgggctgggaggccttacaca	16	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76507338	A	A	76507338	2	1	116	1	0	0	0	0	0	0	0	1	16752	1103	39	4		4	TSKU	11	76507338	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	136384	76507338	58499178	1321	110317											
MYO7A	4647	broad.mit.edu	37	chr11	76872033	76872033	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggggatctacgggcgGctgttcgtgtggattgtgga	17	6	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76872033	T	T	76872033	2	4	116	1	0	0	0	0	0	0	0	1	10176	1190	42	3		3	MYO7A	11	76872033	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	364695	76872033	58134483	1322	110318											
MYO7A	4647	broad.mit.edu	37	chr11	76910853	76910853	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtggccctgcaggataaCcccaaccccggtgagtggct	13	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76910853	T	T	76910853	2	4	116	1	0	0	0	0	0	0	0	1	10176	506	18	4		4	MYO7A	11	76910853	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	38820	76910853	58095663	1323	110319											
MYO7A	4647	broad.mit.edu	37	chr11	76912698	76912699	+	Intron	DNP	GG	TT	TT													attgtggtatgtggcctgggGgtggcagatgggtgggaggt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	76912699	TT	TT	76912698	1	4	116	0	1	0	0	0	0	0	0	0	10176	1247	43	2		2	MYO7A	11	76912698	Intron	DNP	GG	TCGA-44-3918-01A-01D-1105-08	1845	76912698	58093818	1324	110320											
GDPD4	220032	broad.mit.edu	37	chr11	76996134	76996134	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaagtgaaactcaccagtCaaagttaaagtattcactgg	7	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76996134	A	A	76996134	3	1	116	1	0	0	0	0	1	0	0	0	6390	826	29	3	1573	3	GDPD4	11	76996134	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	83436	76996134	58010382	1325	110321											
ALG8	79053	broad.mit.edu	37	chr11	77825338	77825338	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tatttgcagtgaaacagtagGatcgcagcagatatacacca	9	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77825338	C	C	77825338	3	2	116	1	0	0	0	0	1	0	0	0	523	1174	41	4	1024	4	ALG8	11	77825338	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	829204	77825338	57181178	1326	110322											
DLG2	1740	broad.mit.edu	37	chr11	83170832	83170832	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgttcttctaaatgctcttCtgtcgttgtcagaggcgcag	10	9	5	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83170832	T	T	83170832	1	4	116	0	1	0	0	0	0	0	0	0	4595	928	32	4		4	DLG2	11	83170832	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	5345494	83170832	51835684	1327	110323											
TYR	7299	broad.mit.edu	37	chr11	88924513	88924513	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgatgtagaattttgCctgagtttgacccaatatga	9	7	1	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88924513	A	A	88924513	4	1	116	1	0	0	0	0	0	1	0	0	16939	747	26	3	969	3	TYR	11	88924513	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5753681	88924513	46082003	1328	110324											
FAT3	120114	broad.mit.edu	37	chr11	92085508	92085508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttaatagatctatcctGggatatcaaatacagaatag	6	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92085508	T	T	92085508	3	4	116	1	0	0	0	0	1	0	0	0	5748	1357	47	2	232	2	FAT3	11	92085508	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3160995	92085508	42921008	1329	110325											
FAT3	120114	broad.mit.edu	37	chr11	92533122	92533122	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttgtctctattgatgcaGactcagaaaacaataaaatg	7	6	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92533122	T	T	92533122	3	4	116	1	0	0	0	0	1	0	0	0	5748	942	33	3	6977	3	FAT3	11	92533122	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	447614	92533122	42473394	1330	110326											
FAT3	120114	broad.mit.edu	37	chr11	92616436	92616436	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtttcaccctgagtcgcccCgcatcctgacagcccggcgg	11	18	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92616436	T	T	92616436	3	4	116	1	0	0	0	0	1	0	0	0	5748	652	23	4	12904	4	FAT3	11	92616436	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	83314	92616436	42390080	1331	110327											
FOLR4	390243	broad.mit.edu	37	chr11	94040589	94040589	+	Splice_Site	DEL	G	-	-													tccctcctccatcccctgcaGggaagaaccgctgccccaaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94040589	-	-	94040589	8	5	116	1	0	1	0	1	0	0	1	0	6042	1014	35	0	477	0	FOLR4	11	94040589	Splice_Site	DEL	G	TCGA-44-3918-01A-01D-1105-08	1424153	94040589	40965927	1332	110328											
KIAA1377	57562	broad.mit.edu	37	chr11	101828831	101828831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattacacctaatgtgtcatGtatatacatatagaaagaag	6	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101828831	T	T	101828831	1	4	116	0	1	0	0	0	0	0	0	0	8297	1392	48	3		3	KIAA1377	11	101828831	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	7788242	101828831	33177685	1333	110329											
KIAA1377	57562	broad.mit.edu	37	chr11	101832914	101832914	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtactagataaaaaatGtgaaaagacctctgaaacta	7	5	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101832914	C	C	101832914	3	2	116	1	0	0	0	0	1	0	0	0	8297	1377	48	4	1170	4	KIAA1377	11	101832914	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4083	101832914	33173602	1334	110330											
PDGFD	80310	broad.mit.edu	37	chr11	103814331	103814331	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttttgtccagagcatcCgcaatcagagtgggatccgt	10	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103814331	A	A	103814331	2	1	116	1	0	0	0	0	0	0	0	1	11754	639	23	1		1	PDGFD	11	103814331	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1981417	103814331	31192185	1335	110331											
ZC3H12C	85463	broad.mit.edu	37	chr11	110023660	110023660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagccatggaaacaaagaaGtattttcctgcagaggaata	9	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110023660	T	T	110023660	3	4	116	1	0	0	0	0	1	0	0	0	17689	1029	36	3	800	3	ZC3H12C	11	110023660	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6209329	110023660	24982856	1336	110332											
ZC3H12C	85463	broad.mit.edu	37	chr11	110036179	110036179	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatcgacgcctatgggtaccGgcagacttattccttgcccg	11	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110036179	C	C	110036179	3	2	116	1	0	0	0	0	1	0	0	0	17689	1116	39	4	2391	4	ZC3H12C	11	110036179	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	12519	110036179	24970337	1337	110333											
PTS	5805	broad.mit.edu	37	chr11	112138746	112138746	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatagcagccactttctTatgatttgcctgatccatca	5	11	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112138746	C	C	112138746	1	2	116	0	1	0	0	0	0	0	0	0	12926	1769	61	5		5	PTS	11	112138746	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2102567	112138746	22867770	1338	110334											
NCAM1	4684	broad.mit.edu	37	chr11	113105826	113105826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgccgtaaggctggcggcgCtcaatggcaaagggctgggt	17	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113105826	A	A	113105826	3	1	116	1	0	0	0	0	1	0	0	0	10297	797	28	3	1820	3	NCAM1	11	113105826	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	967080	113105826	21900690	1339	110335											
ZBTB16	7704	broad.mit.edu	37	chr11	113934732	113934732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggtgggcggcaccctgGggtggctgaggtgaagacgg	23	7	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113934732	T	T	113934732	3	4	116	1	0	0	0	0	1	0	0	0	17652	1232	43	2	712	2	ZBTB16	11	113934732	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	828906	113934732	21071784	1340	110336											
FAM55D	54827	broad.mit.edu	37	chr11	114465538	114465538	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaacatacaacaaaacAgaaaagcaaacaaacatggg	5	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114465538	C	C	114465538	1	2	116	0	1	0	0	0	0	0	0	0	5638	203	7	5		5	FAM55D	11	114465538	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	530806	114465538	20540978	1341	110337											
CEP164	22897	broad.mit.edu	37	chr11	117233039	117233039	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctgggagacattgacatAgagagtggggaggagcattc	16	5	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117233039	G	G	117233039	1	3	116	0	1	0	0	0	0	0	0	0	3279	435	15	5		5	CEP164	11	117233039	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	2767501	117233039	17773477	1342	110338											
DSCAML1	57453	broad.mit.edu	37	chr11	117335693	117335693	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggcattgatctcgctggaaGagggccccgtgccagcccga	14	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117335693	C	C	117335693	3	2	116	1	0	0	0	0	1	0	0	0	4809	942	33	4	2999	4	DSCAML1	11	117335693	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	102654	117335693	17670823	1343	110339											
TMPRSS4	56649	broad.mit.edu	37	chr11	117969814	117969814	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcattgtggttgtcctcaGtaagtgacagcccgtacccg	10	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117969814	T	T	117969814	5	4	116	1	0	0	0	0	0	0	1	0	16372	1043	36	3	168	3	TMPRSS4	11	117969814	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	634121	117969814	17036702	1344	110340											
CD3D	915	broad.mit.edu	37	chr11	118210393	118210393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactaaacctaccaccagccCcattccttagctggtgcata	6	15	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118210393	A	A	118210393	1	1	116	0	1	0	0	0	0	0	0	0	3040	638	22	2		2	CD3D	11	118210393	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	240579	118210393	16796123	1345	110341											
IFT46	56912	broad.mit.edu	37	chr11	118428531	118428531	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctggtggcacttgagactTgcaggggcaggtggaacagg	18	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118428531	A	A	118428531	1	1	116	0	1	0	0	0	0	0	0	0	7630	1799	63	5		5	IFT46	11	118428531	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	218138	118428531	16577985	1346	110342											
PHLDB1	23187	broad.mit.edu	37	chr11	118509715	118509715	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctccttacagctgctgcAaaaggtagggtccctgaggt	12	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118509715	G	G	118509715	3	3	116	1	0	0	0	0	1	0	0	0	11946	130	5	5	2680	5	PHLDB1	11	118509715	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	81184	118509715	16496801	1347	110343											
NLRX1	79671	broad.mit.edu	37	chr11	119044711	119044711	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagcatctcaacctcgacttCcggctggcaggcacgggact	12	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119044711	G	G	119044711	3	3	116	1	0	0	0	0	1	0	0	0	10580	854	30	4	767	4	NLRX1	11	119044711	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	534996	119044711	15961805	1348	110344											
NLRX1	79671	broad.mit.edu	37	chr11	119045171	119045171	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcttcccaggccagcattCtggtgaccactcggccctct	9	17	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119045171	A	A	119045171	3	1	116	1	0	0	0	0	1	0	0	0	10580	912	32	3	877	3	NLRX1	11	119045171	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	460	119045171	15961345	1349	110345											
ARHGEF12	23365	broad.mit.edu	37	chr11	120348157	120348157	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttctctacagaGgagataatgatgaagaagat	8	3	1	6			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120348157	A	A	120348157	3	1	116	1	0	0	0	0	1	0	0	0	899	1014	35	4	3596	4	ARHGEF12	11	120348157	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1302986	120348157	14658359	1350	110346											
DCPS	28960	broad.mit.edu	37	chr11	126176481	126176481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgaatgaggcctctgGggatggggatggagaggatg	20	4	1	3	rs11557735		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126176481	T	T	126176481	3	4	116	1	0	0	0	0	1	0	0	0	4334	1232	43	2	224	2	DCPS	11	126176481	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	5828324	126176481	8830035	1351	110347											
FLI1	2313	broad.mit.edu	37	chr11	128680738	128680739	+	Frame_Shift_Ins	INS	-	A	A													aactttgtccctccccatccINSatcctccatgcctgtcactt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128680739	A	A	128680738	7	5	116	1	0	1	1	0	0	0	0	0	5981	594	21	0	1248	0	FLI1	11	128680738	Frame_Shift_Ins	INS	-	TCGA-44-3918-01A-01D-1105-08	2504257	128680738	6325778	1352	110348											
ARHGAP32	9743	broad.mit.edu	37	chr11	128838969	128838970	+	Missense_Mutation	DNP	GC	AA	AA													gactcctcgctggtgctgagGcagggagtggtaatcttcca					rs117353412	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	128838970	AA	AA	128838969	3	1	116	1	0	0	0	0	1	0	0	0	883	1203	42	4	170	4	ARHGAP32	11	128838969	Missense_Mutation	DNP	GC	TCGA-44-3918-01A-01D-1105-08	158231	128838969	6167547	1353	110349											
CACNA2D4	93589	broad.mit.edu	37	chr12	1943326	1943326	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaggattgactacattgctGataaaaactaccttctgggg	9	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1943326	T	T	1943326	1	4	116	0	1	0	0	0	0	0	0	0	2577	1305	45	3		3	CACNA2D4	12	1943326	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08		1943326	131908569	1354	110350											
CACNA1C	775	broad.mit.edu	37	chr12	2613866	2613866	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attctgacccattggccaggCaggctgtttggcctctgatt	11	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2613866	G	G	2613866	1	3	116	0	1	0	0	0	0	0	0	0	2566	725	25	4		4	CACNA1C	12	2613866	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	670540	2613866	131238029	1355	110351											
CACNA1C	775	broad.mit.edu	37	chr12	2786312	2786312	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttcctgatccaggagtaCttccggaagttcaagaagcg	11	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2786312	A	A	2786312	4	1	116	1	0	0	0	0	0	1	0	0	2566	576	20	3	5422	3	CACNA1C	12	2786312	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	172446	2786312	131065583	1356	110352											
TNFRSF1A	7132	broad.mit.edu	37	chr12	6442132	6442132	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagtaggaccctgagcacTctggggcatcctggcatctg	13	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6442132	A	A	6442132	1	1	116	0	1	0	0	0	0	0	0	0	16416	1566	54	5		5	TNFRSF1A	12	6442132	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	3655820	6442132	127409763	1357	110353											
LAG3	3902	broad.mit.edu	37	chr12	6886278	6886278	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaataaatagaaagaaaaaGatgaacgtggccatgaccca	8	6	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6886278	A	A	6886278	1	1	116	0	1	0	0	0	0	0	0	0	8672	957	33	4		4	LAG3	12	6886278	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	444146	6886278	126965617	1358	110354											
EMG1	10436	broad.mit.edu	37	chr12	7083817	7083817	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaagtgaatccccagacccGaattcccagaacctttgacc	7	14	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7083817	A	A	7083817	3	1	116	1	0	0	0	0	1	0	0	0	5132	1058	37	4	383	4	EMG1	12	7083817	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	197539	7083817	126768078	1359	110355											
CLEC4A	50856	broad.mit.edu	37	chr12	8286766	8286766	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcgctttctctttcgggcCtgcacgagggtttctgcttt	11	11	2	0	rs111886055		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8286766	T	T	8286766	1	4	116	0	1	0	0	0	0	0	0	0	3544	696	24	4		4	CLEC4A	12	8286766	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1202949	8286766	125565129	1360	110356											
CLEC4A	50856	broad.mit.edu	37	chr12	8289546	8289546	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgggtcctggatcatgcaGagagcttagggtattctagc	13	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8289546	C	C	8289546	1	2	116	0	1	0	0	0	0	0	0	0	3544	957	33	4		4	CLEC4A	12	8289546	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2780	8289546	125562349	1361	110357											
MFAP5	8076	broad.mit.edu	37	chr12	8802174	8802174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacatacgtcgtaaactgCagacgtcccagtgtcatagg	10	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8802174	A	A	8802174	1	1	116	0	1	0	0	0	0	0	0	0	9611	725	25	3		3	MFAP5	12	8802174	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	512628	8802174	125049721	1362	110358											
A2ML1	144568	broad.mit.edu	37	chr12	9004757	9004757	+	Intron	DEL	G	-	-													aggtttccccaggcctctatGcactacctcctttgtttgta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9004757	-	-	9004757	6	5	116	0	1	1	0	1	0	0	0	0	5	1334	46	0		0	A2ML1	12	9004757	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	202583	9004757	124847138	1363	110359											
CLEC1B	51266	broad.mit.edu	37	chr12	10147844	10147844	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtcctggctttgatgtacTcctattgtaaacataaataa	7	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10147844	A	A	10147844	3	1	116	1	0	0	0	0	1	0	0	0	3538	1565	54	5	257	5	CLEC1B	12	10147844	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	1143087	10147844	123704051	1364	110360											
TAS2R31	259290	broad.mit.edu	37	chr12	11183830	11183830	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcttttgtctcttgacCcgctcaatggaatttaccaa	7	10	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11183830	A	A	11183830	2	1	116	1	0	0	0	0	0	0	0	1	15693	610	22	2		2	TAS2R31	12	11183830	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1035986	11183830	122668065	1365	110361											
PRB3	5544	broad.mit.edu	37	chr12	11421703	11421703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttctcaccacaccccatgCatcccctaggttagctcatc	4	18	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11421703	T	T	11421703	1	4	116	0	1	0	0	0	0	0	0	0	12550	725	25	4		4	PRB3	12	11421703	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	237873	11421703	122430192	1366	110362											
GRIN2B	2904	broad.mit.edu	37	chr12	13719990	13719990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaccatgccaggcttgCcagaacagacacccataaag	9	12	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13719990	A	A	13719990	3	1	116	1	0	0	0	0	1	0	0	0	6846	739	26	3	1895	3	GRIN2B	12	13719990	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2298287	13719990	120131905	1367	110363											
PLEKHA5	54477	broad.mit.edu	37	chr12	19459505	19459505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactaccatcgtccccagCactgcggatccgggccctag	9	17	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19459505	A	A	19459505	1	1	116	0	1	0	0	0	0	0	0	0	12154	725	25	3		3	PLEKHA5	12	19459505	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5739515	19459505	114392390	1368	110364											
PDE3A	5139	broad.mit.edu	37	chr12	20786566	20786566	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgtatacatagatggtAtgtgcctatgactttttgaa	8	4	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20786566	T	T	20786566	1	4	116	0	1	0	0	0	0	0	0	0	11731	464	16	5		5	PDE3A	12	20786566	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	1327061	20786566	113065329	1369	110365											
ABCC9	10060	broad.mit.edu	37	chr12	22078928	22078928	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atattatgataatacactatCgatgttgtagtggcaacgaa	8	5	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078928	A	A	22078928	2	1	116	1	0	0	0	0	0	0	0	1	59	871	31	3		3	ABCC9	12	22078928	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1292362	22078928	111772967	1370	110366											
C12orf71	728858	broad.mit.edu	37	chr12	27235077	27235077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaacttgtctatccacaGgttgtctccatttagaagcc	8	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27235077	T	T	27235077	3	4	116	1	0	0	0	0	1	0	0	0	1725	991	35	2	477	2	C12orf71	12	27235077	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	5156149	27235077	106616818	1371	110367											
FAR2	55711	broad.mit.edu	37	chr12	29450256	29450256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagcaaaatgttttgaaaCggtgctagccttagctacct	9	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29450256	A	A	29450256	1	1	116	0	1	0	0	0	0	0	0	0	5732	551	19	3		3	FAR2	12	29450256	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2215179	29450256	104401639	1372	110368											
OVCH1	341350	broad.mit.edu	37	chr12	29617594	29617594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagtcataacttagtgtGttaaagtcttcatgcactat	7	7	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29617594	T	T	29617594	3	4	116	1	0	0	0	0	1	0	0	0	11417	1368	48	3	1477	3	OVCH1	12	29617594	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	167338	29617594	104234301	1373	110369											
OVCH1	341350	broad.mit.edu	37	chr12	29630545	29630545	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actatttaatggtcctttgaTcattcaacattccctgcttc	4	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29630545	A	A	29630545	1	1	116	0	1	0	0	0	0	0	0	0	11417	1450	50	5		5	OVCH1	12	29630545	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	12951	29630545	104221350	1374	110370											
OVCH1	341350	broad.mit.edu	37	chr12	29648245	29648245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttgtgttttagatacaGcagtgcaatatcaggactca	9	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29648245	T	T	29648245	3	4	116	1	0	0	0	0	1	0	0	0	11417	962	34	3	3077	3	OVCH1	12	29648245	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	17700	29648245	104203650	1375	110371											
TMTC1	83857	broad.mit.edu	37	chr12	29736290	29736290	+	Intron	SNP	A	T	T													tttgtttggaaacaatttgtAagcaaagaaataaacaggaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29736290	T	T	29736290	1	4	116	0	1	0	0	0	0	0	0	0	16383	377	13	5		5	TMTC1	12	29736290	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	88045	29736290	104115605	1376	110372	476	2									
TMTC1	83857	broad.mit.edu	37	chr12	29736292	29736292	+	Intron	SNP	G	A	A													tgtttggaaacaatttgtaaGcaaagaaataaacaggaaga							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29736292	A	A	29736292	1	1	116	0	1	0	0	0	0	0	0	0	16383	986	34	4		4	TMTC1	12	29736292	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2	29736292	104115603	1377	110373	476	2									
TMTC1	83857	broad.mit.edu	37	chr12	29786026	29786026	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactaaaaagaacattatagGcatagaatatctgtcttcaa	5	7	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29786026	T	T	29786026	1	4	116	0	1	0	0	0	0	0	0	0	16383	1218	42	3		3	TMTC1	12	29786026	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	49734	29786026	104065869	1378	110374											
TMTC1	83857	broad.mit.edu	37	chr12	29786293	29786293	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaagagaagaagaatcactGaaacactgctcaagaaccat	7	8	2	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29786293	A	A	29786293	1	1	116	0	1	0	0	0	0	0	0	0	16383	1305	45	4		4	TMTC1	12	29786293	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	267	29786293	104065602	1379	110375											
TMTC1	83857	broad.mit.edu	37	chr12	29904726	29904726	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcttcccattctcccGgtgaggatggcctggcagtg	13	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29904726	A	A	29904726	3	1	116	1	0	0	0	0	1	0	0	0	16383	1115	39	4	1893	4	TMTC1	12	29904726	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	118433	29904726	103947169	1380	110376											
IPO8	10526	broad.mit.edu	37	chr12	30802261	30802261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatataaattcagccataGgaaccacagctttgcttgct	6	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30802261	A	A	30802261	1	1	116	0	1	0	0	0	0	0	0	0	7868	1015	35	4		4	IPO8	12	30802261	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	897535	30802261	103049634	1381	110377											
DDX11	1663	broad.mit.edu	37	chr12	31251012	31251012	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagatgcattatcagtcctGttctctcctggggccccaag	10	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31251012	C	C	31251012	1	2	116	0	1	0	0	0	0	0	0	0	4376	1392	48	4		4	DDX11	12	31251012	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	448751	31251012	102600883	1382	110378											
DENND5B	160518	broad.mit.edu	37	chr12	31613379	31613379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacaatcacttcattaagCtggaaaatgtggatcttaag	7	7	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31613379	A	A	31613379	1	1	116	0	1	0	0	0	0	0	0	0	4477	812	28	3		3	DENND5B	12	31613379	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	362367	31613379	102238516	1383	110379											
C12orf35	55196	broad.mit.edu	37	chr12	32137492	32137492	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactcatcttcagaggaagaGaaacaaaaagagcagtgttc	9	7	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32137492	T	T	32137492	3	4	116	1	0	0	0	0	1	0	0	0	1695	933	33	3	3605	3	C12orf35	12	32137492	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	524113	32137492	101714403	1384	110380											
DNM1L	10059	broad.mit.edu	37	chr12	32873785	32873785	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttttaccaattggtgtctGagagggttcattttcagttc	10	6	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32873785	A	A	32873785	1	1	116	0	1	0	0	0	0	0	0	0	4711	1305	45	4		4	DNM1L	12	32873785	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	736293	32873785	100978110	1385	110381											
PKP2	5318	broad.mit.edu	37	chr12	32955375	32955375	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagattccgggacagattcCtcagcagcgagatggctgtc	12	10	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32955375	T	T	32955375	3	4	116	1	0	0	0	0	1	0	0	0	12080	681	24	4	400	4	PKP2	12	32955375	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	81590	32955375	100896520	1386	110382											
SYT10	341359	broad.mit.edu	37	chr12	33559893	33559893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagttgatcatatgctacaGgaaattgaaaagtttcatca	7	5	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33559893	T	T	33559893	3	4	116	1	0	0	0	0	1	0	0	0	15585	1000	35	2	683	2	SYT10	12	33559893	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	604518	33559893	100292002	1387	110383											
ALG10	84920	broad.mit.edu	37	chr12	34175689	34175689	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgctactgtgagggccAtttctccctttcccaggtgg	12	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34175689	T	T	34175689	3	4	116	1	0	0	0	0	1	0	0	0	511	217	8	5	157	5	ALG10	12	34175689	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	615796	34175689	99676206	1388	110384											
ALG10	84920	broad.mit.edu	37	chr12	34177036	34177036	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttgttaatcttctcttcaGtgttggcaacttctatttac	5	8	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34177036	C	C	34177036	3	2	116	1	0	0	0	0	1	0	0	0	511	1029	36	4	317	4	ALG10	12	34177036	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1347	34177036	99674859	1389	110385											
CNTN1	1272	broad.mit.edu	37	chr12	41423090	41423090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccctgtggattcccaaGggtagggataagcctgatac	12	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41423090	T	T	41423090	1	4	116	0	1	0	0	0	0	0	0	0	3672	1015	35	2		2	CNTN1	12	41423090	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	7246054	41423090	92428805	1390	110386											
PDZRN4	29951	broad.mit.edu	37	chr12	41900598	41900598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagaagcagttccactaGcaggttgacagttatggaga	12	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41900598	T	T	41900598	1	4	116	0	1	0	0	0	0	0	0	0	11804	986	34	3		3	PDZRN4	12	41900598	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	477508	41900598	91951297	1391	110387											
ADAMTS20	80070	broad.mit.edu	37	chr12	43826370	43826370	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgtaattagaaagaaaggGgcaactttttttaagcaatc	8	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43826370	A	A	43826370	1	1	116	0	1	0	0	0	0	0	0	0	266	1247	43	4		4	ADAMTS20	12	43826370	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1925772	43826370	90025525	1392	110388											
NELL2	4753	broad.mit.edu	37	chr12	45209815	45209815	+	Frame_Shift_Del	DEL	G	-	-													aataactcctgaatttaagtGggtctgttttagggtcacca							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45209815	-	-	45209815	7	5	116	1	0	1	0	1	0	0	0	0	10429	1348	47	0	2233	0	NELL2	12	45209815	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	1383445	45209815	88642080	1393	110389											
ANO6	196527	broad.mit.edu	37	chr12	45742320	45742320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttacttcatcctctctcGggtcaagtatcaagtgataa	8	9	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45742320	T	T	45742320	3	4	116	1	0	0	0	0	1	0	0	0	701	1116	39	1	695	1	ANO6	12	45742320	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	532505	45742320	88109575	1394	110390											
ANO6	196527	broad.mit.edu	37	chr12	45761615	45761615	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatatttacacctaatgaaaGattttttttctaatgctaat	3	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45761615	C	C	45761615	1	2	116	0	1	0	0	0	0	0	0	0	701	957	33	4		4	ANO6	12	45761615	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	19295	45761615	88090280	1395	110391											
HDAC7	51564	broad.mit.edu	37	chr12	48188652	48188652	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccggtcccccgccatctGtctccaggtcttcagccgag	11	18	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48188652	A	A	48188652	3	1	116	1	0	0	0	0	1	0	0	0	7079	1377	48	4	1686	4	HDAC7	12	48188652	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2427037	48188652	85663243	1396	110392											
TUBA1A	7846	broad.mit.edu	37	chr12	49579227	49579227	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccatgtatttaccatggcGagggtcacatttcaccatct	8	11	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49579227	A	A	49579227	3	1	116	1	0	0	0	0	1	0	0	0	16869	1058	37	4	437	4	TUBA1A	12	49579227	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1390575	49579227	84272668	1397	110393											
TROAP	10024	broad.mit.edu	37	chr12	49724561	49724561	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtagagctgggggcatcaGagccctgcaccctggaacat	15	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49724561	C	C	49724561	3	2	116	1	0	0	0	0	1	0	0	0	16700	943	33	4	2081	4	TROAP	12	49724561	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	145334	49724561	84127334	1398	110394											
MCRS1	10445	broad.mit.edu	37	chr12	49959210	49959210	+	Intron	SNP	C	T	T													ggctggggcagcttggtcctCtcaccagcctgctctgcagg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49959210	T	T	49959210	1	4	116	0	1	0	0	0	0	0	0	0	9492	928	32	4		4	MCRS1	12	49959210	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	234649	49959210	83892685	1399	110395	477	2									
MCRS1	10445	broad.mit.edu	37	chr12	49959212	49959212	+	Intron	SNP	C	T	T													ctggggcagcttggtcctctCaccagcctgctctgcagggc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49959212	T	T	49959212	1	4	116	0	1	0	0	0	0	0	0	0	9492	841	29	4		4	MCRS1	12	49959212	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2	49959212	83892683	1400	110396	477	2									
GPD1	2819	broad.mit.edu	37	chr12	50497978	50497978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaggttcctgttcagcCcctgctgctatcttctatca	6	16	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50497978	A	A	50497978	1	1	116	0	1	0	0	0	0	0	0	0	6669	638	22	2		2	GPD1	12	50497978	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	538766	50497978	83353917	1401	110397											
SCN8A	6334	broad.mit.edu	37	chr12	52082842	52082842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcgctgagaacattcaGggttctccgagctttgaaaa	10	10	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52082842	T	T	52082842	1	4	116	0	1	0	0	0	0	0	0	0	14037	1015	35	2		2	SCN8A	12	52082842	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1584864	52082842	81769053	1402	110398											
KRT72	140807	broad.mit.edu	37	chr12	52994912	52994912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccatctccacgttgagcgGggccaggaggctcttgttga	14	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52994912	T	T	52994912	3	4	116	1	0	0	0	0	1	0	0	0	8556	1232	43	2	1246	2	KRT72	12	52994912	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	912070	52994912	80856983	1403	110399											
KRT79	338785	broad.mit.edu	37	chr12	53217606	53217606	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcaggcctagcccctcgGggtgacaatgagaaggccct	14	12	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53217606	A	A	53217606	1	1	116	0	1	0	0	0	0	0	0	0	8563	1247	43	4		4	KRT79	12	53217606	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	222694	53217606	80634289	1404	110400											
KRT78	196374	broad.mit.edu	37	chr12	53232851	53232851	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagagccggctgatgggGggagtgggccaaatgtgttc	18	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53232851	T	T	53232851	1	4	116	0	1	0	0	0	0	0	0	0	8562	1247	43	2		2	KRT78	12	53232851	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	15245	53232851	80619044	1405	110401											
KRT8	3856	broad.mit.edu	37	chr12	53342823	53342823	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccgagccgtccacctgtgGctccggcttccgaagcggct	12	17	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53342823	A	A	53342823	1	1	116	0	1	0	0	0	0	0	0	0	8564	1218	42	4		4	KRT8	12	53342823	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	109972	53342823	80509072	1406	110402											
TENC1	23371	broad.mit.edu	37	chr12	53452352	53452352	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcactgtccactccccAtagatgagaggttccccttc	6	15	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53452352	G	G	53452352	1	3	116	0	1	0	0	0	0	0	0	0	15880	232	8	5		5	TENC1	12	53452352	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	109529	53452352	80399543	1407	110403											
MAP3K12	7786	broad.mit.edu	37	chr12	53876886	53876886	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgactccgtcctggtgagggGgggcccttaggacacccagg	16	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53876886	A	A	53876886	2	1	116	1	0	0	0	0	0	0	0	1	9338	1219	43	4		4	MAP3K12	12	53876886	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	424534	53876886	79975009	1408	110404											
NCKAP1L	3071	broad.mit.edu	37	chr12	54930672	54930672	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtttgggtcatcctggagTggcttactttgtcatttcct	10	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54930672	A	A	54930672	1	1	116	0	1	0	0	0	0	0	0	0	10317	1711	59	5		5	NCKAP1L	12	54930672	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	1053786	54930672	78921223	1409	110405											
KIAA0748	9840	broad.mit.edu	37	chr12	55357527	55357527	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggagggacactcactGgccagcatgaggcaggggtc	17	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55357527	T	T	55357527	2	4	116	1	0	0	0	0	0	0	0	1	8260	1362	47	2		2	KIAA0748	12	55357527	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	426855	55357527	78494368	1410	110406											
RAB5B	5869	broad.mit.edu	37	chr12	56385939	56385939	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcagcaggccgaagccgGggtgtggatctccatgaaca	16	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56385939	T	T	56385939	2	4	116	1	0	0	0	0	0	0	0	1	13057	1219	43	2		2	RAB5B	12	56385939	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1028412	56385939	77465956	1411	110407											
GLS2	27165	broad.mit.edu	37	chr12	56867227	56867227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcaaaaatagtaagtaCtatatgcaaagcatctcacc	5	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56867227	A	A	56867227	1	1	116	0	1	0	0	0	0	0	0	0	6528	580	20	3		3	GLS2	12	56867227	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	481288	56867227	76984668	1412	110408											
HSD17B6	8630	broad.mit.edu	37	chr12	57178691	57178691	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagttgaacctggctacttCagaacgggaatgacaaacat	9	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57178691	G	G	57178691	3	3	116	1	0	0	0	0	1	0	0	0	7454	825	29	4	637	4	HSD17B6	12	57178691	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	311464	57178691	76673204	1413	110409											
RDH16	8608	broad.mit.edu	37	chr12	57351015	57351015	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacatccagggtcaccgtctCcagcctgtctgaagtctggc	10	14	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57351015	A	A	57351015	4	1	116	1	0	0	0	0	0	1	0	0	13302	864	30	3	737	3	RDH16	12	57351015	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	172324	57351015	76500880	1414	110410											
MYO1A	4640	broad.mit.edu	37	chr12	57432685	57432685	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgactttgctctcgtagtGgccatgcttggagaagagct	14	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57432685	A	A	57432685	3	1	116	1	0	0	0	0	1	0	0	0	10162	1348	47	4	1742	4	MYO1A	12	57432685	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	81670	57432685	76419210	1415	110411											
LRP1	4035	broad.mit.edu	37	chr12	57589477	57589478	+	Missense_Mutation	DNP	GC	TG	TG													tgacgaccgtgagttcatgtGccagaaccgccagtgcatcc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	57589478	TG	TG	57589477	3	4	116	1	0	0	0	0	1	0	0	0	9038	1319	46	3	8684	3	LRP1	12	57589477	Missense_Mutation	DNP	GC	TCGA-44-3918-01A-01D-1105-08	156792	57589477	76262418	1416	110412											
GLI1	2735	broad.mit.edu	37	chr12	57865862	57865862	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaagagtagggaatctcatCcatcacagatcgcatttcct	7	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57865862	A	A	57865862	1	1	116	0	1	0	0	0	0	0	0	0	6501	870	30	3		3	GLI1	12	57865862	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	276385	57865862	75986033	1417	110413											
PIP4K2C	79837	broad.mit.edu	37	chr12	57993227	57993227	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgataaggaaaaggtgatAgtaattttatgtgctagggt	13	2	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57993227	T	T	57993227	1	4	116	0	1	0	0	0	0	0	0	0	12033	435	15	5		5	PIP4K2C	12	57993227	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	127365	57993227	75858668	1418	110414											
GEFT	115557	broad.mit.edu	37	chr12	58009514	58009514	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtggggagaaggccacgaGggagggcttggagagagaga	22	4	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58009514	A	A	58009514	1	1	116	0	1	0	0	0	0	0	0	0	6392	1015	35	4		4	GEFT	12	58009514	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	16287	58009514	75842381	1419	110415											
AGAP2	116986	broad.mit.edu	37	chr12	58121759	58121759	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcattgcagactggctagGatctgactctcgatggcctg	12	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58121759	A	A	58121759	2	1	116	1	0	0	0	0	0	0	0	1	368	1164	41	4		4	AGAP2	12	58121759	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	112245	58121759	75730136	1420	110416											
FAM19A2	338811	broad.mit.edu	37	chr12	62104171	62104171	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcagccttgaggatcaCttgatttctcctgggttaat	9	9	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62104171	A	A	62104171	1	1	116	0	1	0	0	0	0	0	0	0	5579	580	20	3		3	FAM19A2	12	62104171	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	3982412	62104171	71747724	1421	110417											
USP15	9958	broad.mit.edu	37	chr12	62696501	62696501	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atacttaaattagccttcatGagtttaatttgtaatgtgtc	6	5	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62696501	T	T	62696501	1	4	116	0	1	0	0	0	0	0	0	0	17172	1305	45	3		3	USP15	12	62696501	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	592330	62696501	71155394	1422	110418											
SRGAP1	57522	broad.mit.edu	37	chr12	64519834	64519834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactatccttcaagaagggtGcctccctgctgctgtatcac	8	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64519834	T	T	64519834	3	4	116	1	0	0	0	0	1	0	0	0	15263	1319	46	3	2376	3	SRGAP1	12	64519834	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1823333	64519834	69332061	1423	110419											
SRGAP1	57522	broad.mit.edu	37	chr12	64519952	64519952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatatgtgagtagtctcaaCtttgattgcctgagtgctcc	11	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64519952	A	A	64519952	1	1	116	0	1	0	0	0	0	0	0	0	15263	580	20	3		3	SRGAP1	12	64519952	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	118	64519952	69331943	1424	110420											
TSPAN8	7103	broad.mit.edu	37	chr12	71519258	71519258	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaacattatatatgaaaaGattttgtatattgacagttc	6	3	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71519258	T	T	71519258	1	4	116	0	1	0	0	0	0	0	0	0	16778	957	33	3		3	TSPAN8	12	71519258	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6999306	71519258	62332637	1425	110421											
LGR5	8549	broad.mit.edu	37	chr12	71946859	71946859	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcttccacaggcgtctGgatgctaaccacatcagcta	7	13	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71946859	T	T	71946859	2	4	116	1	0	0	0	0	0	0	0	1	8829	1335	47	2		2	LGR5	12	71946859	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	427601	71946859	61905036	1426	110422											
TPH2	121278	broad.mit.edu	37	chr12	72366135	72366135	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatacacatgcacaacattAgaaggttagcatttgcttta	6	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72366135	G	G	72366135	1	3	116	0	1	0	0	0	0	0	0	0	16526	435	15	5		5	TPH2	12	72366135	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	419276	72366135	61485760	1427	110423											
TRHDE	29953	broad.mit.edu	37	chr12	72667430	72667430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggggacccagctggcttcCaatacccgggaagccagggg	15	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667430	A	A	72667430	1	1	116	0	1	0	0	0	0	0	0	0	16603	609	21	2		2	TRHDE	12	72667430	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	301295	72667430	61184465	1428	110424											
OSBPL8	114882	broad.mit.edu	37	chr12	76752583	76752583	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcttatgtttcattttgggGacgctaacctaaagaaaaaa	9	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76752583	A	A	76752583	2	1	116	1	0	0	0	0	0	0	0	1	11377	1161	41	4		4	OSBPL8	12	76752583	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	4085153	76752583	57099312	1429	110425											
E2F7	144455	broad.mit.edu	37	chr12	77419548	77419548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctattgatccaaggccaggCaagctgaaattcacaggtcc	10	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77419548	A	A	77419548	3	1	116	1	0	0	0	0	1	0	0	0	4912	709	25	3	388	3	E2F7	12	77419548	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	666965	77419548	56432347	1430	110426											
NAV3	89795	broad.mit.edu	37	chr12	78444860	78444860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgtcttctgaggtcgatGtgggtggatatatgagtgat	14	4	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78444860	T	T	78444860	3	4	116	1	0	0	0	0	1	0	0	0	10279	1377	48	3	2491	3	NAV3	12	78444860	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1025312	78444860	55407035	1431	110427											
TSPAN19	144448	broad.mit.edu	37	chr12	85413375	85413375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacagtggtcaatactgaCatctaattttttagttaatt	5	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85413375	A	A	85413375	1	1	116	0	1	0	0	0	0	0	0	0	16768	493	17	3		3	TSPAN19	12	85413375	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6968515	85413375	48438520	1432	110428											
C12orf50	160419	broad.mit.edu	37	chr12	88379804	88379804	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcggtgataactcatttTattttggggtcttggggcct	12	6	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88379804	A	A	88379804	4	1	116	1	0	0	0	0	0	1	0	0	1708	1763	61	5	307	5	C12orf50	12	88379804	Nonsense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	2966429	88379804	45472091	1433	110429											
C12orf12	196477	broad.mit.edu	37	chr12	91348265	91348265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccctccccagcacccCcagttagagcacacgggtgg	12	17	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91348265	A	A	91348265	3	1	116	1	0	0	0	0	1	0	0	0	1689	624	22	2	969	2	C12orf12	12	91348265	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2968461	91348265	42503630	1434	110430											
EPYC	1833	broad.mit.edu	37	chr12	91396094	91396094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctacttataaaaaaacCcaaacatctatttgaggaaa	3	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91396094	T	T	91396094	1	4	116	0	1	0	0	0	0	0	0	0	5243	638	22	4		4	EPYC	12	91396094	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	47829	91396094	42455801	1435	110431											
DCN	1634	broad.mit.edu	37	chr12	91572091	91572091	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaataaaacaagtaaggtAggtaaagagaaactgcatcc	9	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91572091	T	T	91572091	1	4	116	0	1	0	0	0	0	0	0	0	4330	435	15	5		5	DCN	12	91572091	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	175997	91572091	42279804	1436	110432											
PLXNC1	10154	broad.mit.edu	37	chr12	94642069	94642069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcttccatggggaaaatGggcaattaaattgcagtttt	9	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94642069	A	A	94642069	3	1	116	1	0	0	0	0	1	0	0	0	12221	1348	47	4	2713	4	PLXNC1	12	94642069	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3069978	94642069	39209826	1437	110433											
FGD6	55785	broad.mit.edu	37	chr12	95535446	95535446	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcatgcagaattacaaatCtaaagtacccccttcctcct	3	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95535446	G	G	95535446	1	3	116	0	1	0	0	0	0	0	0	0	5894	928	32	4		4	FGD6	12	95535446	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	893377	95535446	38316449	1438	110434											
ANO4	121601	broad.mit.edu	37	chr12	101462380	101462380	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaagtgtggtgaaagtgctGatgcagtcctttttactgga	12	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101462380	C	C	101462380	1	2	116	0	1	0	0	0	0	0	0	0	699	1305	45	4		4	ANO4	12	101462380	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5926934	101462380	32389515	1439	110435											
MYBPC1	4604	broad.mit.edu	37	chr12	102076361	102076361	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaataaataaatactggtAcaaatattctgattctgcag	7	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102076361	G	G	102076361	1	3	116	0	1	0	0	0	0	0	0	0	10105	406	14	5		5	MYBPC1	12	102076361	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	613981	102076361	31775534	1440	110436											
STAB2	55576	broad.mit.edu	37	chr12	104118665	104118665	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgagacaaaaaatgaattCaaacgcagaattgctttgta	8	5	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104118665	A	A	104118665	1	1	116	0	1	0	0	0	0	0	0	0	15356	841	29	3		3	STAB2	12	104118665	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2042304	104118665	29733230	1441	110437											
NT5DC3	51559	broad.mit.edu	37	chr12	104171766	104171766	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacgccatgtagatgtcagcGaagcgcgacaggcgccttag	14	11	1	1	rs150307975		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104171766	A	A	104171766	2	1	116	1	0	0	0	0	0	0	0	1	10787	1049	37	4		4	NT5DC3	12	104171766	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	53101	104171766	29680129	1442	110438											
HCFC2	29915	broad.mit.edu	37	chr12	104496743	104496743	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccccccttcaagaatgttGaaggtatccacctttcctgg	7	15	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104496743	A	A	104496743	3	1	116	1	0	0	0	0	1	0	0	0	7059	1291	45	4	2129	4	HCFC2	12	104496743	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	324977	104496743	29355152	1443	110439											
C12orf45	121053	broad.mit.edu	37	chr12	105388402	105388402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccatagataacattaaGcttcccaattctgaaggtgg	8	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105388402	T	T	105388402	3	4	116	1	0	0	0	0	1	0	0	0	1704	962	34	3	500	3	C12orf45	12	105388402	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	891659	105388402	28463493	1444	110440											
WSCD2	9671	broad.mit.edu	37	chr12	108641767	108641767	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctttctcctctctctgcaGagtggccagagttcgtgagg	11	12	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108641767	C	C	108641767	5	2	116	1	0	0	0	0	0	0	1	0	17534	956	33	4	1375	4	WSCD2	12	108641767	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	3253365	108641767	25210128	1445	110441											
CORO1C	23603	broad.mit.edu	37	chr12	109042473	109042473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagaatgttcttcttgaCcaccttgagatccctgtttt	6	11	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109042473	A	A	109042473	3	1	116	1	0	0	0	0	1	0	0	0	3787	507	18	3	219	3	CORO1C	12	109042473	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	400706	109042473	24809422	1446	110442											
ACACB	32	broad.mit.edu	37	chr12	109697788	109697788	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaccaacctcagagggccGaggtaagagtctgatgagct	14	9	2	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109697788	T	T	109697788	1	4	116	0	1	0	0	0	0	0	0	0	107	1073	37	3		3	ACACB	12	109697788	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	655315	109697788	24154107	1447	110443											
UBE3B	89910	broad.mit.edu	37	chr12	109921601	109921601	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttttctcataaagtgcttGaaaagccttccaggtgctac	7	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109921601	C	C	109921601	1	2	116	0	1	0	0	0	0	0	0	0	17006	1305	45	4		4	UBE3B	12	109921601	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	223813	109921601	23930294	1448	110444											
CCDC63	160762	broad.mit.edu	37	chr12	111291371	111291371	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccagcagaagattgcgAgtcagtagtaagtgatggtt	13	5	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111291371	T	T	111291371	3	4	116	1	0	0	0	0	1	0	0	0	2862	304	11	5	178	5	CCDC63	12	111291371	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	1369770	111291371	22560524	1449	110445											
SDS	10993	broad.mit.edu	37	chr12	113836547	113836547	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgtggcaccttcattctTgaggcgctcaatggtgagag	13	9	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113836547	G	G	113836547	3	3	116	1	0	0	0	0	1	0	0	0	14088	1821	63	5	708	5	SDS	12	113836547	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	2545176	113836547	20015348	1450	110446											
TBX5	6910	broad.mit.edu	37	chr12	114832473	114832473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggagcaaagttccagcaGgaaaaccttgcagattcatg	11	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114832473	T	T	114832473	1	4	116	0	1	0	0	0	0	0	0	0	15783	1015	35	2		2	TBX5	12	114832473	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	995926	114832473	19019422	1451	110447											
TBX5	6910	broad.mit.edu	37	chr12	114837133	114837133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatctggaaaaccggagCtaattgttgtagtttctttg	9	7	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114837133	A	A	114837133	1	1	116	0	1	0	0	0	0	0	0	0	15783	812	28	3		3	TBX5	12	114837133	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4660	114837133	19014762	1452	110448											
MED13L	23389	broad.mit.edu	37	chr12	116434322	116434322	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgcagggggcatgggCagttgttcaattttaggagg	18	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116434322	A	A	116434322	2	1	116	1	0	0	0	0	0	0	0	1	9524	697	25	3		3	MED13L	12	116434322	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1597189	116434322	17417573	1453	110449											
FBXW8	26259	broad.mit.edu	37	chr12	117448436	117448436	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtattaggtaatagttggatGtagctatgtctctgcttcat	10	5	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117448436	C	C	117448436	1	2	116	0	1	0	0	0	0	0	0	0	5827	1392	48	4		4	FBXW8	12	117448436	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1014114	117448436	16403459	1454	110450											
KSR2	283455	broad.mit.edu	37	chr12	118020257	118020257	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaggggggctcgtcaccCtcaggaaggataccagttgc	14	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118020257	T	T	118020257	1	4	116	0	1	0	0	0	0	0	0	0	8654	696	24	4		4	KSR2	12	118020257	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	571821	118020257	15831638	1455	110451											
CCDC60	160777	broad.mit.edu	37	chr12	119866454	119866454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaagcattgtattaacaCtccttttattttaacccctt	4	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119866454	A	A	119866454	1	1	116	0	1	0	0	0	0	0	0	0	2859	580	20	3		3	CCDC60	12	119866454	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1846197	119866454	13985441	1456	110452											
TCTN2	79867	broad.mit.edu	37	chr12	124175131	124175131	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccagtggcatttcttcacAattttgatgttaaatgcgtt	7	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124175131	T	T	124175131	3	4	116	1	0	0	0	0	1	0	0	0	15845	130	5	5	973	5	TCTN2	12	124175131	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	4308677	124175131	9676764	1457	110453											
DNAH10	196385	broad.mit.edu	37	chr12	124323331	124323331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaggttcaacccagagGgttaagactgaaatgctgct	11	9	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124323331	T	T	124323331	1	4	116	0	1	0	0	0	0	0	0	0	4638	1247	43	2		2	DNAH10	12	124323331	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	148200	124323331	9528564	1458	110454											
GLT1D1	144423	broad.mit.edu	37	chr12	129373263	129373263	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggcggaaaaaaacacagtCatgggcagagttcttgagga	13	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129373263	A	A	129373263	2	1	116	1	0	0	0	0	0	0	0	1	6529	813	29	3		3	GLT1D1	12	129373263	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	5049932	129373263	4478632	1459	110455											
GLT1D1	144423	broad.mit.edu	37	chr12	129442081	129442081	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacccccttttctcctgtCtcctccaggcaatggattta	5	16	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129442081	A	A	129442081	1	1	116	0	1	0	0	0	0	0	0	0	6529	928	32	3		3	GLT1D1	12	129442081	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	68818	129442081	4409814	1460	110456											
PIWIL1	9271	broad.mit.edu	37	chr12	130841624	130841624	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaaagttacaccagccatGggcatgcaaatgagaaaagc	9	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130841624	C	C	130841624	3	2	116	1	0	0	0	0	1	0	0	0	12052	1348	47	4	1612	4	PIWIL1	12	130841624	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1399543	130841624	3010271	1461	110457											
ULK1	8408	broad.mit.edu	37	chr12	132405810	132405810	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggctgggctgggggctgggGactctgggcgtctccctcac	18	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132405810	A	A	132405810	1	1	116	0	1	0	0	0	0	0	0	0	17101	1189	41	4		4	ULK1	12	132405810	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1564186	132405810	1446085	1462	110458											
ULK1	8408	broad.mit.edu	37	chr12	132406036	132406055	+	3'UTR	DEL	ACAGTCAGCCTGCCGGCCTC	-	-													ccctgccctgggccccacggAcagtcagcctgccggcctcc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132406055	-	-	132406036	6	5	116	0	1	1	0	1	0	0	0	0	17101	290	10	0		0	ULK1	12	132406036	3'UTR	DEL	ACAGTCAGCCTGCCGGCCTC	TCGA-44-3918-01A-01D-1105-08	226	132406036	1445859	1463	110459											
EP400	57634	broad.mit.edu	37	chr12	132561930	132561930	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggcaatgtgtgttttctGactctctcggctcaggcttc	11	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132561930	T	T	132561930	1	4	116	0	1	0	0	0	0	0	0	0	5191	1305	45	3		3	EP400	12	132561930	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	155894	132561930	1289965	1464	110460											
DDX51	317781	broad.mit.edu	37	chr12	132624412	132624412	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcgcagcctcacctgcacTttcaggagcagtgtgaaggc	11	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132624412	C	C	132624412	2	2	116	1	0	0	0	0	0	0	0	1	4402	1606	56	5		5	DDX51	12	132624412	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	62482	132624412	1227483	1465	110461											
POLE	5426	broad.mit.edu	37	chr12	133248877	133248877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaaggtcttctcaaccCgctgcagcaggaagtcaaag	12	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133248877	A	A	133248877	3	1	116	1	0	0	0	0	1	0	0	0	12291	652	23	1	5278	1	POLE	12	133248877	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	624465	133248877	603018	1466	110462											
ZNF268	10795	broad.mit.edu	37	chr12	133768117	133768117	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttgtggattttacctggGaggagtggcagctgctagac	15	6	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133768117	T	T	133768117	4	4	116	1	0	0	0	0	0	1	0	0	17933	1175	41	3	287	3	ZNF268	12	133768117	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	519240	133768117	83778	1467	110463											
IFT88	8100	broad.mit.edu	37	chr13	21171206	21171206	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagagagtcctggtgagacAgcgagaacaagttacaactc	12	8	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21171206	T	T	21171206	3	4	116	1	0	0	0	0	1	0	0	0	7636	188	7	5	603	5	IFT88	13	21171206	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08		21171206	93998672	1468	110464											
LATS2	26524	broad.mit.edu	37	chr13	21549522	21549522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgaggaaacaacagagcCaacaggttagtttctcctca	8	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21549522	A	A	21549522	1	1	116	0	1	0	0	0	0	0	0	0	8719	609	21	2		2	LATS2	13	21549522	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	378316	21549522	93620356	1469	110465											
SACS	26278	broad.mit.edu	37	chr13	23909848	23909848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtccaaaagattctggaCcattctgtctgatgctggaa	9	8	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23909848	A	A	23909848	3	1	116	1	0	0	0	0	1	0	0	0	13915	507	18	3	5576	3	SACS	13	23909848	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2360326	23909848	91260030	1470	110466											
MIPEP	4285	broad.mit.edu	37	chr13	24449106	24449106	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaattgctaacaaaaaaaTtgtggttttttgttaaataa	5	2	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24449106	C	C	24449106	1	2	116	0	1	0	0	0	0	0	0	0	9685	1508	52	5		5	MIPEP	13	24449106	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	539258	24449106	90720772	1471	110467											
ATP12A	479	broad.mit.edu	37	chr13	25264402	25264402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctctgtcctggggttcGgtgcggcacagacttggggg	18	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25264402	T	T	25264402	1	4	116	0	1	0	0	0	0	0	0	0	1126	1131	39	1		1	ATP12A	13	25264402	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	815296	25264402	89905476	1472	110468											
MTMR6	9107	broad.mit.edu	37	chr13	25826203	25826203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatttttataaatcaggCgatggcttccgaagcagatt	8	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25826203	A	A	25826203	1	1	116	0	1	0	0	0	0	0	0	0	10041	783	27	3		3	MTMR6	13	25826203	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	561801	25826203	89343675	1473	110469											
ATP8A2	51761	broad.mit.edu	37	chr13	26151107	26151107	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatagaccttgttcattttTaggaaccccagacccccttt	6	12	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26151107	C	C	26151107	1	2	116	0	1	0	0	0	0	0	0	0	1197	1769	61	5		5	ATP8A2	13	26151107	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	324904	26151107	89018771	1474	110470											
ATP8A2	51761	broad.mit.edu	37	chr13	26402171	26402171	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgtgtccagctggtgGtccacattcccgctacttct	10	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26402171	T	T	26402171	1	4	116	0	1	0	0	0	0	0	0	0	1197	1276	44	3		3	ATP8A2	13	26402171	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	251064	26402171	88767707	1475	110471											
ATP8A2	51761	broad.mit.edu	37	chr13	26411231	26411231	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaagtgaagtcatcatttGgtagaagggaacaatgaagc	13	4	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26411231	C	C	26411231	1	2	116	0	1	0	0	0	0	0	0	0	1197	1363	47	4		4	ATP8A2	13	26411231	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	9060	26411231	88758647	1476	110472											
LNX2	222484	broad.mit.edu	37	chr13	28155856	28155856	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccattttgaatcaattctgTatcctcatgtgttagacttc	5	10	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28155856	G	G	28155856	1	3	116	0	1	0	0	0	0	0	0	0	8940	1653	57	5		5	LNX2	13	28155856	5'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	1744625	28155856	87014022	1477	110473											
FLT1	2321	broad.mit.edu	37	chr13	29004289	29004289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttttcgatgtttcacaGtgatgaatgctttatctttg	9	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29004289	T	T	29004289	3	4	116	1	0	0	0	0	1	0	0	0	5999	1029	36	3	3367	3	FLT1	13	29004289	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	848433	29004289	86165589	1478	110474											
MTUS2	23281	broad.mit.edu	37	chr13	29599270	29599270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtgaggccagtctagaCgttttggctaaaagggatgc	14	6	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599270	A	A	29599270	3	1	116	1	0	0	0	0	1	0	0	0	10060	535	19	3	467	3	MTUS2	13	29599270	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	594981	29599270	85570608	1479	110475											
USPL1	10208	broad.mit.edu	37	chr13	31221140	31221140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaatgctgcccattttgGtccatgtaacaattgcaaca	6	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31221140	T	T	31221140	3	4	116	1	0	0	0	0	1	0	0	0	17219	1261	44	3	1206	3	USPL1	13	31221140	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1621870	31221140	83948738	1480	110476											
DCLK1	9201	broad.mit.edu	37	chr13	36367660	36367660	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaaaaagaaagaaaatgAgataaatgaaaaatgaaggc	10	1	0	6			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36367660	T	T	36367660	1	4	116	0	1	0	0	0	0	0	0	0	4324	319	11	5		5	DCLK1	13	36367660	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	5146520	36367660	78802218	1481	110477											
ENOX1	55068	broad.mit.edu	37	chr13	43918817	43918817	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatagaactggtttgcagagCgccgattcacttcccctcgt	9	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43918817	G	G	43918817	3	3	116	1	0	0	0	0	1	0	0	0	5168	768	27	4	1074	4	ENOX1	13	43918817	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	7551157	43918817	71251061	1482	110478											
ENOX1	55068	broad.mit.edu	37	chr13	43935509	43935509	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggaggtaccagtccaagGcctggtatcattgggttaat	15	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43935509	T	T	43935509	2	4	116	1	0	0	0	0	0	0	0	1	5168	1190	42	3		3	ENOX1	13	43935509	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	16692	43935509	71234369	1483	110479											
SPERT	220082	broad.mit.edu	37	chr13	46276762	46276762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccagatatcatctacaCgttctttcagactcagactt	5	12	5	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46276762	A	A	46276762	1	1	116	0	1	0	0	0	0	0	0	0	15157	551	19	3		3	SPERT	13	46276762	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2341253	46276762	68893116	1484	110480											
INTS6	26512	broad.mit.edu	37	chr13	51957561	51957561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtaaccaaaaggatgacCaagttcactgtattttgcac	7	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51957561	A	A	51957561	3	1	116	1	0	0	0	0	1	0	0	0	7852	594	21	2	1619	2	INTS6	13	51957561	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5680799	51957561	63212317	1485	110481											
OLFM4	10562	broad.mit.edu	37	chr13	53624276	53624276	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagatgggagactgttggaGtattatagactgtacaacac	11	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53624276	C	C	53624276	3	2	116	1	0	0	0	0	1	0	0	0	10950	1020	36	4	921	4	OLFM4	13	53624276	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1666715	53624276	61545602	1486	110482											
TDRD3	81550	broad.mit.edu	37	chr13	61057959	61057959	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaactgaaggtggaccaccGccttttgtgccttttggaca	12	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61057959	T	T	61057959	2	4	116	1	0	0	0	0	0	0	0	1	15854	1074	38	3		3	TDRD3	13	61057959	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	7433683	61057959	54111919	1487	110483											
KLHL1	57626	broad.mit.edu	37	chr13	70514351	70514351	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggttctcaatggtgtcctCttttaattccaagcagccta	7	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70514351	A	A	70514351	4	1	116	1	0	0	0	0	0	1	0	0	8436	922	32	3	1443	3	KLHL1	13	70514351	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	9456392	70514351	44655527	1488	110484											
KLHL1	57626	broad.mit.edu	37	chr13	70681381	70681381	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggctagagttgtctggctCcactttgagctcttgcagaa	11	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70681381	A	A	70681381	4	1	116	1	0	0	0	0	0	1	0	0	8436	864	30	3	1839	3	KLHL1	13	70681381	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	167030	70681381	44488497	1489	110485											
DIS3	22894	broad.mit.edu	37	chr13	73348274	73348274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttcaaaatcaaaatgCatacatggatactaatccat	3	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73348274	A	A	73348274	1	1	116	0	1	0	0	0	0	0	0	0	4575	725	25	3		3	DIS3	13	73348274	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2666893	73348274	41821604	1490	110486											
SCEL	8796	broad.mit.edu	37	chr13	78173884	78173884	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagataaagatggcaaaggGtaagattttattaagacaga	10	3	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78173884	T	T	78173884	5	4	116	1	0	0	0	0	0	0	1	0	14000	1275	44	3	972	3	SCEL	13	78173884	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	4825610	78173884	36995994	1491	110487											
SLITRK1	114798	broad.mit.edu	37	chr13	84455652	84455652	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagcagcatttttaaagcGagcaattcatccccgatctc	6	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84455652	T	T	84455652	1	4	116	0	1	0	0	0	0	0	0	0	14856	1073	37	3		3	SLITRK1	13	84455652	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	6281768	84455652	30714226	1492	110488											
SLITRK5	26050	broad.mit.edu	37	chr13	88328566	88328566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacggggtatttacacaCcaccccggcgtcagtgaatt	9	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88328566	A	A	88328566	3	1	116	1	0	0	0	0	1	0	0	0	14860	507	18	3	925	3	SLITRK5	13	88328566	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3872914	88328566	26841312	1493	110489											
GPC6	10082	broad.mit.edu	37	chr13	94938671	94938671	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtcggtcatggacccgataGatgtcaagatttctgaagcc	11	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94938671	T	T	94938671	3	4	116	1	0	0	0	0	1	0	0	0	6667	942	33	3	964	3	GPC6	13	94938671	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6610105	94938671	20231207	1494	110490											
ABCC4	10257	broad.mit.edu	37	chr13	95861826	95861826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcctgcagtggtcctgccCacaggaagtgtaagaacact	11	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95861826	A	A	95861826	3	1	116	1	0	0	0	0	1	0	0	0	55	595	21	2	3483	2	ABCC4	13	95861826	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	923155	95861826	19308052	1495	110491											
DOCK9	23348	broad.mit.edu	37	chr13	99462534	99462534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcactgctcaaggagctcCatcagcacatcctgatcaaa	8	14	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99462534	A	A	99462534	3	1	116	1	0	0	0	0	1	0	0	0	4734	594	21	2	1100	2	DOCK9	13	99462534	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3600708	99462534	15707344	1496	110492											
CLYBL	171425	broad.mit.edu	37	chr13	100425245	100425245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgctcgactgtgaggatgGagtggctgcaaacaaaaagg	15	6	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100425245	T	T	100425245	3	4	116	1	0	0	0	0	1	0	0	0	3605	1174	41	3	236	3	CLYBL	13	100425245	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	962711	100425245	14744633	1497	110493											
NALCN	259232	broad.mit.edu	37	chr13	101714425	101714425	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcgccaggagttcctcCagctgcaagctcttccggat	9	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101714425	A	A	101714425	2	1	116	1	0	0	0	0	0	0	0	1	10242	581	21	2		2	NALCN	13	101714425	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1289180	101714425	13455453	1498	110494											
NALCN	259232	broad.mit.edu	37	chr13	101747881	101747881	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatttaaagccttatactgAcaaacacaccattcttcaga	3	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101747881	T	T	101747881	1	4	116	0	1	0	0	0	0	0	0	0	10242	290	10	5		5	NALCN	13	101747881	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	33456	101747881	13421997	1499	110495											
FGF14	2259	broad.mit.edu	37	chr13	102521158	102521158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacaacacgtagtcccaCtggtatgaggttgaagagtg	13	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102521158	A	A	102521158	3	1	116	1	0	0	0	0	1	0	0	0	5900	565	20	3	430	3	FGF14	13	102521158	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	773277	102521158	12648720	1500	110496											
FGF14	2259	broad.mit.edu	37	chr13	102670779	102670779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttcctcttcctcctctGgctcagaatcctctactgag	5	16	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102670779	T	T	102670779	1	4	116	0	1	0	0	0	0	0	0	0	5900	1363	47	2		2	FGF14	13	102670779	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	149621	102670779	12499099	1501	110497											
TPP2	7174	broad.mit.edu	37	chr13	103301782	103301782	+	Silent	SNP	A	T	T													cctaaaggggcaggacctggAtgctatcttgcaggatcctt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103301782	T	T	103301782	2	4	116	1	0	0	0	0	0	0	0	1	16536	320	12	5		5	TPP2	13	103301782	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	631003	103301782	11868096	1502	110498	478	2									
TPP2	7174	broad.mit.edu	37	chr13	103301784	103301784	+	Missense_Mutation	SNP	G	T	T													taaaggggcaggacctggatGctatcttgcaggatccttaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103301784	T	T	103301784	3	4	116	1	0	0	0	0	1	0	0	0	16536	1319	46	3	2990	3	TPP2	13	103301784	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2	103301784	11868094	1503	110499	478	2									
COL4A1	1282	broad.mit.edu	37	chr13	110814762	110814762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctggcaacccatcggggCctggtggacctggaaatcct	12	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110814762	A	A	110814762	3	1	116	1	0	0	0	0	1	0	0	0	3721	739	26	3	752	3	COL4A1	13	110814762	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	7512978	110814762	4355116	1504	110500											
COL4A1	1282	broad.mit.edu	37	chr13	110829281	110829281	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgctgcccatgtccacCttatccatggagccaggctt	8	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110829281	T	T	110829281	2	4	116	1	0	0	0	0	0	0	0	1	3721	680	24	4		4	COL4A1	13	110829281	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	14519	110829281	4340597	1505	110501											
COL4A2	1284	broad.mit.edu	37	chr13	111092175	111092175	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaaaaggatcaccaggaCagaaggtaagttggatgcat	13	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111092175	T	T	111092175	4	4	116	1	0	0	0	0	0	1	0	0	3722	479	17	4	1010	4	COL4A2	13	111092175	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	262894	111092175	4077703	1506	110502											
COL4A2	1284	broad.mit.edu	37	chr13	111098172	111098172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagcaaatatctttcttGcagggaagccgaggcctgga	11	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111098172	T	T	111098172	1	4	116	0	1	0	0	0	0	0	0	0	3722	1334	46	3		3	COL4A2	13	111098172	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5997	111098172	4071706	1507	110503											
ING1	3621	broad.mit.edu	37	chr13	111367725	111367725	+	5'UTR	SNP	A	G	G													gagacgtagcttcgcagcgaAttttataggaacttcattag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111367725	G	G	111367725	1	3	116	0	1	0	0	0	0	0	0	0	7805	116	4	5		5	ING1	13	111367725	5'UTR	SNP	A	TCGA-44-3918-01A-01D-1105-08	269553	111367725	3802153	1508	110504	479	2									
ING1	3621	broad.mit.edu	37	chr13	111367733	111367734	+	5'UTR	DNP	GG	TT	TT													gcttcgcagcgaattttataGgaacttcattagcatattat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	111367734	TT	TT	111367733	1	4	116	0	1	0	0	0	0	0	0	0	7805	1015	35	2		2	ING1	13	111367733	5'UTR	DNP	GG	TCGA-44-3918-01A-01D-1105-08	8	111367733	3802145	1509	110505	479	2									
MCF2L	23263	broad.mit.edu	37	chr13	113719441	113719441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagctgtggggggctccGgtcagtcagaagctgcgcgg	19	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113719441	T	T	113719441	1	4	116	0	1	0	0	0	0	0	0	0	9472	1131	39	1		1	MCF2L	13	113719441	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2351708	113719441	1450437	1510	110506											
F10	2159	broad.mit.edu	37	chr13	113801935	113801935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaaatcctatttgtagGggttaggggcatttcacaga	11	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113801935	T	T	113801935	1	4	116	0	1	0	0	0	0	0	0	0	5379	1247	43	2		2	F10	13	113801935	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	82494	113801935	1367943	1511	110507											
FAM70B	348013	broad.mit.edu	37	chr13	114507819	114507819	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagcccttccctccactaGggggtacacgccgaccaccc	9	19	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114507819	A	A	114507819	1	1	116	0	1	0	0	0	0	0	0	0	5657	1015	35	4		4	FAM70B	13	114507819	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	705884	114507819	662059	1512	110508											
POTEG	404785	broad.mit.edu	37	chr14	19566063	19566063	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacagatgctaaaagtctcTtctgaaaacagcaatccagg	7	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19566063	C	C	19566063	2	2	116	1	0	0	0	0	0	0	0	1	12362	1596	56	5		5	POTEG	14	19566063	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08		19566063	87783477	1513	110509											
POTEG	404785	broad.mit.edu	37	chr14	19566082	19566082	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctgaaaacagcaatccaGgtaagacttataacagtgaa	7	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19566082	A	A	19566082	3	1	116	1	0	0	0	0	1	0	0	0	12362	1014	35	4	1148	4	POTEG	14	19566082	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	19	19566082	87783458	1514	110510											
OR4K1	79544	broad.mit.edu	37	chr14	20404138	20404138	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggcccagatattcgttcttCacagttttgttgggagtgag	12	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20404138	A	A	20404138	3	1	116	1	0	0	0	0	1	0	0	0	11161	826	29	3	315	3	OR4K1	14	20404138	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	838056	20404138	86945402	1515	110511											
OR4K1	79544	broad.mit.edu	37	chr14	20404584	20404584	+	Frame_Shift_Del	DEL	T	-	-													gtcattcttttcttcgggccTtgcatttatttctatatatg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20404584	-	-	20404584	7	5	116	1	0	1	0	1	0	0	0	0	11161	1596	56	0	761	0	OR4K1	14	20404584	Frame_Shift_Del	DEL	T	TCGA-44-3918-01A-01D-1105-08	446	20404584	86944956	1516	110512											
OR4L1	122742	broad.mit.edu	37	chr14	20528475	20528475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctcactgaccacaagaCcatctctgtgtggggctgcg	11	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20528475	A	A	20528475	3	1	116	1	0	0	0	0	1	0	0	0	11168	507	18	3	274	3	OR4L1	14	20528475	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	123891	20528475	86821065	1517	110513											
RNASE10	338879	broad.mit.edu	37	chr14	20978889	20978890	+	Missense_Mutation	DNP	GG	TT	TT													ggccagaagatcccatcctcGgtgaagatgaggttgggggt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	20978890	TT	TT	20978889	3	4	116	1	0	0	0	0	1	0	0	0	13511	1116	39	1	261	1	RNASE10	14	20978889	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	450414	20978889	86370651	1518	110514											
EDDM3A	10876	broad.mit.edu	37	chr14	21216183	21216183	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atagaacctatcagcaactaGaaagtctatgcacatcctca	5	11	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21216183	C	C	21216183	4	2	116	1	0	0	0	0	0	0	0	0	4949	937	33	4	446	4	EDDM3A	14	21216183	Nonstop_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	237294	21216183	86133357	1519	110515											
HNRNPC	3183	broad.mit.edu	37	chr14	21679518	21679518	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggcactccatgtgtcccTgagcccccctccaccacctt	7	19	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21679518	A	A	21679518	1	1	116	0	1	0	0	0	0	0	0	0	7329	1595	55	5		5	HNRNPC	14	21679518	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	463335	21679518	85670022	1520	110516											
SUPT16H	11198	broad.mit.edu	37	chr14	21851948	21851948	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaccgaaagagaaaaaaGggcgccgagaaacagggtta	13	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21851948	A	A	21851948	1	1	116	0	1	0	0	0	0	0	0	0	15514	1015	35	4		4	SUPT16H	14	21851948	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	172430	21851948	85497592	1521	110517											
SUPT16H	11198	broad.mit.edu	37	chr14	21851982	21851982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggttattatgggatggctAagggggctccctaggaaaaa	15	5	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21851982	G	G	21851982	1	3	116	0	1	0	0	0	0	0	0	0	15514	377	13	5		5	SUPT16H	14	21851982	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	34	21851982	85497558	1522	110518											
ACIN1	22985	broad.mit.edu	37	chr14	23538845	23538845	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgacaggaggggggagtGgtggtgggggggcgggcaga	25	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23538845	A	A	23538845	1	1	116	0	1	0	0	0	0	0	0	0	142	1363	47	4		4	ACIN1	14	23538845	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1686863	23538845	83810695	1523	110519											
CMTM5	116173	broad.mit.edu	37	chr14	23847785	23847785	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcattttcctttcctcccCgagcttctttccatttccac	3	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23847785	T	T	23847785	1	4	116	0	1	0	0	0	0	0	0	0	3618	667	23	4		4	CMTM5	14	23847785	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	308940	23847785	83501755	1524	110520											
MYH6	4624	broad.mit.edu	37	chr14	23859650	23859650	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctccagctcctcgatGcgtgcctgggtcagacacaa	9	16	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23859650	C	C	23859650	2	2	116	1	0	0	0	0	0	0	0	1	10132	1306	46	4		4	MYH6	14	23859650	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	11865	23859650	83489890	1525	110521											
MYH6	4624	broad.mit.edu	37	chr14	23869813	23869813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtcaccacacagtccCcactgccttcccatgtctgg	6	19	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23869813	T	T	23869813	1	4	116	0	1	0	0	0	0	0	0	0	10132	638	22	4		4	MYH6	14	23869813	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	10163	23869813	83479727	1526	110522											
MYH6	4624	broad.mit.edu	37	chr14	23873428	23873428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagatacagtacaatcaaCtgggtgtggcaaaacagcac	10	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23873428	A	A	23873428	1	1	116	0	1	0	0	0	0	0	0	0	10132	580	20	3		3	MYH6	14	23873428	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3615	23873428	83476112	1527	110523											
MYH6	4624	broad.mit.edu	37	chr14	23874763	23874763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtctctccccctcttcttGggagagcccccctggcttat	9	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23874763	T	T	23874763	1	4	116	0	1	0	0	0	0	0	0	0	10132	1363	47	2		2	MYH6	14	23874763	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1335	23874763	83474777	1528	110524											
CPNE6	9362	broad.mit.edu	37	chr14	24546478	24546478	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catcatcatcgtaggcgtggGcaatgctgacttctctgaca	10	11	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24546478	C	C	24546478	3	2	116	1	0	0	0	0	1	0	0	0	3848	1203	42	4	1469	4	CPNE6	14	24546478	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	671715	24546478	82803062	1529	110525											
NEDD8	4738	broad.mit.edu	37	chr14	24701538	24701538	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgctccggtcgccgctgcCgccctccagcactcttgcct	9	21	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24701538	T	T	24701538	1	4	116	0	1	0	0	0	0	0	0	0	10407	667	23	4		4	NEDD8	14	24701538	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	155060	24701538	82648002	1530	110526											
NFATC4	4776	broad.mit.edu	37	chr14	24845994	24845994	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccaggctatggccctgggGagggggctccggagcaggag	21	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24845994	T	T	24845994	4	4	116	1	0	0	0	0	0	1	0	0	10460	1175	41	3	2778	3	NFATC4	14	24845994	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	144456	24845994	82503546	1531	110527											
CTSG	1511	broad.mit.edu	37	chr14	25042889	25042889	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagtttgaagcttctcattGttgtccttatccagggcagg	11	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25042889	C	C	25042889	3	2	116	1	0	0	0	0	1	0	0	0	4069	1377	48	4	49	4	CTSG	14	25042889	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	196895	25042889	82306651	1532	110528											
FOXG1	2290	broad.mit.edu	37	chr14	29237763	29237763	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacgtcccgcacccgtcaatGacttcgcagagcagcacgtc	9	17	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29237763	T	T	29237763	3	4	116	1	0	0	0	0	1	0	0	0	6067	1290	45	3	1280	3	FOXG1	14	29237763	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4194874	29237763	78111777	1533	110529											
PRKD1	5587	broad.mit.edu	37	chr14	30046644	30046644	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcattccagctctcgcaaatCtaaccaggtctgatagtcct	7	13	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30046644	A	A	30046644	3	1	116	1	0	0	0	0	1	0	0	0	12624	913	32	3	203	3	PRKD1	14	30046644	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	808881	30046644	77302896	1534	110530											
BAZ1A	11177	broad.mit.edu	37	chr14	35243654	35243654	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatcatatgcattggaagatCttccccgactatatgttggt	9	8	2	1	rs146795126		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35243654	G	G	35243654	3	3	116	1	0	0	0	0	1	0	0	0	1334	913	32	4	1830	4	BAZ1A	14	35243654	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5197010	35243654	72105886	1535	110531											
CTAGE5	4253	broad.mit.edu	37	chr14	39796221	39796221	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtaggatgatgtttcctcCgccaggtatgtaaagacaat	10	9	0	2	rs149036910	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39796221	T	T	39796221	3	4	116	1	0	0	0	0	1	0	0	0	4028	652	23	4	1935	4	CTAGE5	14	39796221	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	4552567	39796221	67553319	1536	110532											
LRFN5	145581	broad.mit.edu	37	chr14	42356854	42356854	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatgataacggaacactTgacattcttatcacaactgt	7	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356854	A	A	42356854	2	1	116	1	0	0	0	0	0	0	0	1	9028	1799	63	5		5	LRFN5	14	42356854	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	2560633	42356854	64992686	1537	110533											
FANCM	57697	broad.mit.edu	37	chr14	45645702	45645702	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatgaaatattggaacatAcatcagatagcaatagacct	7	6	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45645702	G	G	45645702	3	3	116	1	0	0	0	0	1	0	0	0	5728	391	14	5	3799	5	FANCM	14	45645702	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	3288848	45645702	61703838	1538	110534											
FANCM	57697	broad.mit.edu	37	chr14	45658239	45658239	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaattattttaccagatGattcaagtgaggaggagaac	10	6	1	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45658239	A	A	45658239	3	1	116	1	0	0	0	0	1	0	0	0	5728	1290	45	4	5092	4	FANCM	14	45658239	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	12537	45658239	61691301	1539	110535											
ATL1	51062	broad.mit.edu	37	chr14	51099082	51099082	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttaagaaatacaggtgCatgaccaattgtcaattaaa	6	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51099082	A	A	51099082	1	1	116	0	1	0	0	0	0	0	0	0	1110	725	25	3		3	ATL1	14	51099082	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	5440843	51099082	56250458	1540	110536											
ABHD12B	145447	broad.mit.edu	37	chr14	51370657	51370657	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacaggcaactgggacatGgagagttttctgtctctgac	13	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51370657	A	A	51370657	1	1	116	0	1	0	0	0	0	0	0	0	77	1363	47	4		4	ABHD12B	14	51370657	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	271575	51370657	55978883	1541	110537											
TRIM9	114088	broad.mit.edu	37	chr14	51446110	51446110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggtgcttacctgcaCgttcctgttcaggctgaccg	14	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51446110	A	A	51446110	3	1	116	1	0	0	0	0	1	0	0	0	16674	536	19	3	75	3	TRIM9	14	51446110	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	75453	51446110	55903430	1542	110538											
PTGDR	5729	broad.mit.edu	37	chr14	52735269	52735269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagggactgtgccgagcCgcgcgcggacgggagggaag	19	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52735269	A	A	52735269	3	1	116	1	0	0	0	0	1	0	0	0	12847	652	23	1	739	1	PTGDR	14	52735269	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1289159	52735269	54614271	1543	110539											
SPTB	6710	broad.mit.edu	37	chr14	65260272	65260272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaactgcttgcgcgcaacCatgccatgagcctcctggaa	9	15	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65260272	A	A	65260272	3	1	116	1	0	0	0	0	1	0	0	0	15236	594	21	2	5038	2	SPTB	14	65260272	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	12525003	65260272	42089268	1544	110540											
PLEK2	26499	broad.mit.edu	37	chr14	67859505	67859505	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgagcatggaggccagggtCaccgcctccagacggctggc	15	13	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67859505	T	T	67859505	2	4	116	1	0	0	0	0	0	0	0	1	12149	813	29	4		4	PLEK2	14	67859505	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	2599233	67859505	39490035	1545	110541											
DCAF5	8816	broad.mit.edu	37	chr14	69520616	69520616	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaattctctgaatcTgtatcttccaattcaattcg	8	8	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69520616	A	A	69520616	2	1	116	1	0	0	0	0	0	0	0	1	4306	1567	55	5		5	DCAF5	14	69520616	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	1661111	69520616	37828924	1546	110542											
GALNTL1	57452	broad.mit.edu	37	chr14	69800212	69800212	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttccctctccttgctcccAggacgcctgtcatagctgga	8	16	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69800212	T	T	69800212	5	4	116	1	0	0	0	0	0	0	1	0	6283	202	7	5	896	5	GALNTL1	14	69800212	Splice_Site	SNP	A	TCGA-44-3918-01A-01D-1105-08	279596	69800212	37549328	1547	110543											
KIAA0247	9766	broad.mit.edu	37	chr14	70175482	70175482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacgaggaggctgtatatGgcagttctggtcactgtgtg	14	7	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70175482	T	T	70175482	3	4	116	1	0	0	0	0	1	0	0	0	8235	1348	47	2	561	2	KIAA0247	14	70175482	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	375270	70175482	37174058	1548	110544											
MED6	10001	broad.mit.edu	37	chr14	71058048	71058048	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcatccacacgttgtctctGaaaaatagagcttggttctt	8	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71058048	A	A	71058048	4	1	116	1	0	0	0	0	0	1	0	0	9544	1299	45	4	235	4	MED6	14	71058048	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	882566	71058048	36291492	1549	110545											
PAPLN	89932	broad.mit.edu	37	chr14	73719886	73719886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggacctcttacctgcaccGgcctggagcgtggcgccttg	13	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73719886	T	T	73719886	1	4	116	0	1	0	0	0	0	0	0	0	11522	1131	39	1		1	PAPLN	14	73719886	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2661838	73719886	33629654	1550	110546											
TTLL5	23093	broad.mit.edu	37	chr14	76243078	76243078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttttctgtggggtttgGgcactgggtaggaaacagaa	15	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76243078	T	T	76243078	1	4	116	0	1	0	0	0	0	0	0	0	16856	1247	43	2		2	TTLL5	14	76243078	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2523192	76243078	31106462	1551	110547											
ESRRB	2103	broad.mit.edu	37	chr14	76905914	76905914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggaggcaccccatgccGcaagagctacgaggactgtg	15	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76905914	T	T	76905914	3	4	116	1	0	0	0	0	1	0	0	0	5303	1087	38	3	220	3	ESRRB	14	76905914	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	662836	76905914	30443626	1552	110548											
ESRRB	2103	broad.mit.edu	37	chr14	76929102	76929102	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagctgtggacctgtgtccCagggtgagacccagtctgag	14	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76929102	T	T	76929102	1	4	116	0	1	0	0	0	0	0	0	0	5303	609	21	4		4	ESRRB	14	76929102	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	23188	76929102	30420438	1553	110549											
ANGEL1	23357	broad.mit.edu	37	chr14	77270204	77270204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgggccacagtggggCctgcagcttcctctggtaaa	15	11	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77270204	A	A	77270204	3	1	116	1	0	0	0	0	1	0	0	0	608	739	26	3	600	3	ANGEL1	14	77270204	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	341102	77270204	30079336	1554	110550											
C14orf148	122945	broad.mit.edu	37	chr14	77880278	77880278	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacacactgctcctcaccCagagtctctggcctccgagt	7	18	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77880278	A	A	77880278	2	1	116	1	0	0	0	0	0	0	0	1	1764	608	21	2		2	C14orf148	14	77880278	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	610074	77880278	29469262	1555	110551											
SPTLC2	9517	broad.mit.edu	37	chr14	78023322	78023322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agactaatgttcccttcagtTaaaaaattctatgacttcat	4	8	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78023322	A	A	78023322	1	1	116	0	1	0	0	0	0	0	0	0	15242	1769	61	5		5	SPTLC2	14	78023322	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	143044	78023322	29326218	1556	110552											
DIO2	1734	broad.mit.edu	37	chr14	80669444	80669444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggctggcagctggctcGtgaaaggaggtcaagtggct	18	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80669444	T	T	80669444	3	4	116	1	0	0	0	0	1	0	0	0	4565	1145	40	3	415	3	DIO2	14	80669444	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2646122	80669444	26680096	1557	110553											
DIO2	1734	broad.mit.edu	37	chr14	80672001	80672001	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttcttagaaacaatgtaTagttcagctgcagaattctt	6	8	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80672001	G	G	80672001	1	3	116	0	1	0	0	0	0	0	0	0	4565	1421	49	5		5	DIO2	14	80672001	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2557	80672001	26677539	1558	110554											
DIO2	1734	broad.mit.edu	37	chr14	80677716	80677716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcaccacgtgcttgaGcagaatgaccgagtcataga	11	11	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80677716	T	T	80677716	3	4	116	1	0	0	0	0	1	0	0	0	4565	971	34	3	841	3	DIO2	14	80677716	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	5715	80677716	26671824	1559	110555											
C14orf145	145508	broad.mit.edu	37	chr14	81244364	81244364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccacgatgaattttagcCatattcttctcttctaaact	4	10	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81244364	A	A	81244364	3	1	116	1	0	0	0	0	1	0	0	0	1762	594	21	2	1086	2	C14orf145	14	81244364	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	566648	81244364	26105176	1560	110556											
TSHR	7253	broad.mit.edu	37	chr14	81609497	81609497	+	Frame_Shift_Del	DEL	T	-	-													caagaggatgagatcattggTtttggccaggagctcaaaaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81609497	-	-	81609497	7	5	116	1	0	1	0	1	0	0	0	0	16747	1712	60	0	1270	0	TSHR	14	81609497	Frame_Shift_Del	DEL	T	TCGA-44-3918-01A-01D-1105-08	365133	81609497	25740043	1561	110557											
KCNK10	54207	broad.mit.edu	37	chr14	88652099	88652099	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agattttctgaacgtcctcgGgcaaggtctttttgaggtcc	11	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88652099	A	A	88652099	3	1	116	1	0	0	0	0	1	0	0	0	8129	1232	43	4	223	4	KCNK10	14	88652099	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	7042602	88652099	18697441	1562	110558											
ZC3H14	79882	broad.mit.edu	37	chr14	89073594	89073594	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttccctttgtagctgagatGagtgaactgagtgtggcaca	12	7	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89073594	A	A	89073594	3	1	116	1	0	0	0	0	1	0	0	0	17692	1290	45	4	2194	4	ZC3H14	14	89073594	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	421495	89073594	18275946	1563	110559											
FBLN5	10516	broad.mit.edu	37	chr14	92353727	92353727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caataactaggcagaaaaagCaccagcaacgaaatctacca	6	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92353727	A	A	92353727	1	1	116	0	1	0	0	0	0	0	0	0	5757	725	25	3		3	FBLN5	14	92353727	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3280133	92353727	14995813	1564	110560											
GOLGA5	9950	broad.mit.edu	37	chr14	93286037	93286037	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattattgcttttacatgtaAgctttttctctttaggatat	5	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93286037	T	T	93286037	1	4	116	0	1	0	0	0	0	0	0	0	6620	87	3	5		5	GOLGA5	14	93286037	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	932310	93286037	14063503	1565	110561											
UBR7	55148	broad.mit.edu	37	chr14	93673492	93673492	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggagtgacatccgtttgtCggaagtcgctcctccccctt	11	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93673492	T	T	93673492	1	4	116	0	1	0	0	0	0	0	0	0	17032	899	31	4		4	UBR7	14	93673492	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	387455	93673492	13676048	1566	110562											
KIAA1409	57578	broad.mit.edu	37	chr14	94069601	94069601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagccatcactgctgtgagGaccaatgttgctaacctcag	9	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94069601	T	T	94069601	3	4	116	1	0	0	0	0	1	0	0	0	8300	1165	41	3	3150	3	KIAA1409	14	94069601	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	396109	94069601	13279939	1567	110563											
KIAA1409	57578	broad.mit.edu	37	chr14	94088826	94088826	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaagcaaaaacgagacctCcttcagaagtcgtttgctct	8	11	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94088826	A	A	94088826	2	1	116	1	0	0	0	0	0	0	0	1	8300	842	30	3		3	KIAA1409	14	94088826	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	19225	94088826	13260714	1568	110564											
KIAA1409	57578	broad.mit.edu	37	chr14	94113051	94113051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctgtgcatgttcatcCtgtttctaaaacaccagtgt	6	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94113051	T	T	94113051	1	4	116	0	1	0	0	0	0	0	0	0	8300	696	24	4		4	KIAA1409	14	94113051	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	24225	94113051	13236489	1569	110565											
ASB2	51676	broad.mit.edu	37	chr14	94420888	94420888	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggccaggccagggggcCtctctctcaggagtgctggc	15	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94420888	T	T	94420888	1	4	116	0	1	0	0	0	0	0	0	0	1027	696	24	4		4	ASB2	14	94420888	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	307837	94420888	12928652	1570	110566											
DDX24	57062	broad.mit.edu	37	chr14	94545842	94545842	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctcctcctcctcttcttCtgaaacagcttgtgcctttc	4	17	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94545842	A	A	94545842	4	1	116	1	0	0	0	0	0	1	0	0	4384	922	32	3	2364	3	DDX24	14	94545842	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	124954	94545842	12803698	1571	110567											
IFI27L1	122509	broad.mit.edu	37	chr14	94567239	94567239	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacatagctgggtagcggtgGagtgggcagagtgatgggga	21	4	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94567239	T	T	94567239	1	4	116	0	1	0	0	0	0	0	0	0	7583	1189	41	3		3	IFI27L1	14	94567239	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	21397	94567239	12782301	1572	110568											
SERPINA6	866	broad.mit.edu	37	chr14	94770803	94770803	+	Frame_Shift_Del	DEL	G	-	-													aaaaggctgctccaggtgaaGtggtcgaagatcatgatgat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94770803	-	-	94770803	7	5	116	1	0	1	0	1	0	0	0	0	14206	1020	36	0	51	0	SERPINA6	14	94770803	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	203564	94770803	12578737	1573	110569											
SERPINA11	256394	broad.mit.edu	37	chr14	94914725	94914725	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagttcgagtttggggctGggcagggcaagggtgtggag	20	4	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94914725	T	T	94914725	2	4	116	1	0	0	0	0	0	0	0	1	14201	1335	47	2		2	SERPINA11	14	94914725	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	143922	94914725	12434815	1574	110570											
SERPINA12	145264	broad.mit.edu	37	chr14	94962858	94962858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggtgcaagagagcttatCgtcatagccaacttggtata	11	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94962858	A	A	94962858	3	1	116	1	0	0	0	0	1	0	0	0	14202	884	31	3	499	3	SERPINA12	14	94962858	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	48133	94962858	12386682	1575	110571											
CYP46A1	10858	broad.mit.edu	37	chr14	100165801	100165801	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggttttttggggatatttAgaagttcctgatgtcaacca	10	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100165801	G	G	100165801	5	3	116	1	0	0	0	0	0	0	1	0	4215	434	15	5	295	5	CYP46A1	14	100165801	Splice_Site	SNP	A	TCGA-44-3918-01A-01D-1105-08	5202943	100165801	7183739	1576	110572											
DLK1	8788	broad.mit.edu	37	chr14	101195108	101195108	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcagcttggcatgttttctCtttaagttttcccattcagg	7	10	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101195108	A	A	101195108	1	1	116	0	1	0	0	0	0	0	0	0	4604	928	32	3		3	DLK1	14	101195108	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1029307	101195108	6154432	1577	110573											
DLK1	8788	broad.mit.edu	37	chr14	101200978	101200978	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacaagaaaacccctctcctCaccgagggccaggccatctg	8	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101200978	A	A	101200978	2	1	116	1	0	0	0	0	0	0	0	1	4604	813	29	3		3	DLK1	14	101200978	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	5870	101200978	6148562	1578	110574											
DYNC1H1	1778	broad.mit.edu	37	chr14	102493773	102493773	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagatctacggacagtgttGagacgttctggctgtaaaaa	12	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102493773	C	C	102493773	3	2	116	1	0	0	0	0	1	0	0	0	4881	1281	45	4	9122	4	DYNC1H1	14	102493773	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1292795	102493773	4855767	1579	110575											
RAGE	5891	broad.mit.edu	37	chr14	102717145	102717145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggagcctggcctggtgCtacctggcgatctcgtagaa	15	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102717145	A	A	102717145	1	1	116	0	1	0	0	0	0	0	0	0	13114	812	28	3		3	RAGE	14	102717145	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	223372	102717145	4632395	1580	110576											
CDC42BPB	9578	broad.mit.edu	37	chr14	103416313	103416313	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggccccattacactcgttCacaatctccttccagctgcc	5	18	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103416313	A	A	103416313	1	1	116	0	1	0	0	0	0	0	0	0	3103	841	29	3		3	CDC42BPB	14	103416313	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	699168	103416313	3933227	1581	110577											
TUBGCP5	114791	broad.mit.edu	37	chr15	22849092	22849092	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtttcaaagaggaacttgCagaaattgagaagtgcatca	10	5	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22849092	T	T	22849092	3	4	116	1	0	0	0	0	1	0	0	0	16895	710	25	4	1177	4	TUBGCP5	15	22849092	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08		22849092	79682300	1582	110578											
GABRB3	2562	broad.mit.edu	37	chr15	27126228	27126228	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taaaagagcttccctgccagGattttggtatgatggctgtt	11	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27126228	C	C	27126228	1	2	116	0	1	0	0	0	0	0	0	0	6228	1189	41	4		4	GABRB3	15	27126228	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4277136	27126228	75405164	1583	110579											
GABRG3	2567	broad.mit.edu	37	chr15	27571836	27571836	+	Intron	SNP	A	T	T													ttgaaccagtctctatcagaAagagaattggggaggtgagg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27571836	T	T	27571836	1	4	116	0	1	0	0	0	0	0	0	0	6233	29	1	5		5	GABRG3	15	27571836	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	445608	27571836	74959556	1584	110580	480	2									
GABRG3	2567	broad.mit.edu	37	chr15	27571838	27571838	+	Intron	SNP	G	T	T													gaaccagtctctatcagaaaGagaattggggaggtgaggat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27571838	T	T	27571838	1	4	116	0	1	0	0	0	0	0	0	0	6233	957	33	3		3	GABRG3	15	27571838	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2	27571838	74959554	1585	110581	480	2									
GABRG3	2567	broad.mit.edu	37	chr15	27586119	27586119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcatgcttttgttttggGgtgtgttttggagggaaaga	16	2	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27586119	T	T	27586119	1	4	116	0	1	0	0	0	0	0	0	0	6233	1247	43	2		2	GABRG3	15	27586119	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	14281	27586119	74945273	1586	110582											
OCA2	4948	broad.mit.edu	37	chr15	28200122	28200122	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacatcctcacaaaatcagCctgctgtatccagaaaacat	4	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28200122	G	G	28200122	1	3	116	0	1	0	0	0	0	0	0	0	10910	754	26	4		4	OCA2	15	28200122	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	614003	28200122	74331270	1587	110583											
TRPM1	4308	broad.mit.edu	37	chr15	31357178	31357178	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatggtggccaaatcaccttCttttcgagcaacagagtaga	9	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31357178	A	A	31357178	1	1	116	0	1	0	0	0	0	0	0	0	16710	928	32	3		3	TRPM1	15	31357178	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3157056	31357178	71174214	1588	110584											
IVD	3712	broad.mit.edu	37	chr15	40708319	40708319	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgtacacccgcctcatgGcgtgtcggcagtatgtctac	10	13	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40708319	A	A	40708319	3	1	116	1	0	0	0	0	1	0	0	0	7998	1203	42	4	1050	4	IVD	15	40708319	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	9351141	40708319	61823073	1589	110585											
CATSPER2	117155	broad.mit.edu	37	chr15	43939636	43939636	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactagctggtgttgatctcCcaatacaagtttcttctggc	8	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43939636	A	A	43939636	4	1	116	1	0	0	0	0	0	1	0	0	2714	632	22	2	1500	2	CATSPER2	15	43939636	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3231317	43939636	58591756	1590	110586											
CTDSPL2	51496	broad.mit.edu	37	chr15	44740819	44740819	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacattttccataccgccaCcatgggggtccctcctccat	6	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44740819	T	T	44740819	1	4	116	0	1	0	0	0	0	0	0	0	4040	522	18	4		4	CTDSPL2	15	44740819	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	801183	44740819	57790573	1591	110587											
DUOX2	50506	broad.mit.edu	37	chr15	45389466	45389466	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctccgccttcaccacgcTgatctccaccttcttccggc	6	20	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45389466	A	A	45389466	3	1	116	1	0	0	0	0	1	0	0	0	4841	1580	55	5	853	5	DUOX2	15	45389466	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	648647	45389466	57141926	1592	110588											
DUOX1	53905	broad.mit.edu	37	chr15	45453242	45453242	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagggagctgaccgggcaGaggcagagtctagaccgcac	16	11	1	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45453242	C	C	45453242	1	2	116	0	1	0	0	0	0	0	0	0	4840	957	33	4		4	DUOX1	15	45453242	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	63776	45453242	57078150	1593	110589											
TMOD3	29766	broad.mit.edu	37	chr15	52194302	52194302	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattgggggaacttctttccCtcttaagaataaattctaac	6	8	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52194302	G	G	52194302	1	3	116	0	1	0	0	0	0	0	0	0	16358	696	24	4		4	TMOD3	15	52194302	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6741060	52194302	50337090	1594	110590											
MAPK6	5597	broad.mit.edu	37	chr15	52339291	52339291	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtacttatattttctttgtAtattgtggcagaatttttaa	7	3	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52339291	G	G	52339291	1	3	116	0	1	0	0	0	0	0	0	0	9373	464	16	5		5	MAPK6	15	52339291	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	144989	52339291	50192101	1595	110591											
NEDD4	4734	broad.mit.edu	37	chr15	56132986	56132986	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaatatgacaaataattaCaaataatcttcctcctttaa	1	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56132986	T	T	56132986	1	4	116	0	1	0	0	0	0	0	0	0	10405	493	17	4		4	NEDD4	15	56132986	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3793695	56132986	46398406	1596	110592											
SNX1	6642	broad.mit.edu	37	chr15	64404771	64404771	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagtatctctttgttttcaGagtaaacatcagtctccaaa	6	8	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64404771	T	T	64404771	5	4	116	1	0	0	0	0	0	0	1	0	14994	956	33	3	165	3	SNX1	15	64404771	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	8271785	64404771	38126621	1597	110593											
PIF1	80119	broad.mit.edu	37	chr15	65114814	65114814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccttggggcttcctggGgggaacagagctatctcaga	14	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65114814	T	T	65114814	1	4	116	0	1	0	0	0	0	0	0	0	11978	1247	43	2		2	PIF1	15	65114814	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	710043	65114814	37416578	1598	110594											
IGDCC4	57722	broad.mit.edu	37	chr15	65678331	65678331	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggggctgggggggccaagCcgagctctggagtacagcgc	21	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65678331	T	T	65678331	2	4	116	1	0	0	0	0	0	0	0	1	7639	726	26	4		4	IGDCC4	15	65678331	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	563517	65678331	36853061	1599	110595											
LCTL	197021	broad.mit.edu	37	chr15	66855910	66855911	+	Missense_Mutation	DNP	GG	AT	AT													agtgatgttgctgctcagaaGggcatcgataagatcactgt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	66855911	AT	AT	66855910	3	1	116	1	0	0	0	0	1	0	0	0	8766	1000	35	4	1319	4	LCTL	15	66855910	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	1177579	66855910	35675482	1600	110596											
PIAS1	8554	broad.mit.edu	37	chr15	68378695	68378695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagtactgttgggctacGccgggagaaacaagcacgga	13	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68378695	T	T	68378695	3	4	116	1	0	0	0	0	1	0	0	0	11970	1087	38	3	82	3	PIAS1	15	68378695	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1522785	68378695	34152697	1601	110597											
SPESP1	246777	broad.mit.edu	37	chr15	69238267	69238267	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccaaacaatgtttccattGttttgcatgcagaggaacct	7	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69238267	C	C	69238267	3	2	116	1	0	0	0	0	1	0	0	0	15158	1377	48	4	400	4	SPESP1	15	69238267	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	859572	69238267	33293125	1602	110598											
GOLGA6C	653641	broad.mit.edu	37	chr15	75562442	75562442	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgagcctggacaacaacGtggagcctgcaccaggagcg	14	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75562442	A	A	75562442	3	1	116	1	0	0	0	0	1	0	0	0	6623	1145	40	4	2054	4	GOLGA6C	15	75562442	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6324175	75562442	26968950	1603	110599											
ADAMTS7	11173	broad.mit.edu	37	chr15	79057034	79057034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagaccgcacccaggcCacaggtggtagagcactgcg	12	16	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79057034	A	A	79057034	3	1	116	1	0	0	0	0	1	0	0	0	271	594	21	2	798	2	ADAMTS7	15	79057034	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3494592	79057034	23474358	1604	110600											
TMC3	342125	broad.mit.edu	37	chr15	81637255	81637255	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagccccattccaggcCgagatgtggaccatttctct	9	14	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81637255	G	G	81637255	3	3	116	1	0	0	0	0	1	0	0	0	16109	652	23	4	1972	4	TMC3	15	81637255	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2580221	81637255	20894137	1605	110601											
MEX3B	84206	broad.mit.edu	37	chr15	82336558	82336558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgcgcctcaatctcctctCgagcgcgatccacgttctct	8	16	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82336558	A	A	82336558	3	1	116	1	0	0	0	0	1	0	0	0	9603	884	31	3	1060	3	MEX3B	15	82336558	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	699303	82336558	20194834	1606	110602											
FSD2	123722	broad.mit.edu	37	chr15	83440921	83440921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtataagctccagcacactcGgactgaggaacctgtggctg	12	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83440921	T	T	83440921	2	4	116	1	0	0	0	0	0	0	0	1	6131	1124	39	1		1	FSD2	15	83440921	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1104363	83440921	19090471	1607	110603											
TM6SF1	53346	broad.mit.edu	37	chr15	83791716	83791716	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactgaattgaaccatgcctCtgtggactggagcatttggg	12	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83791716	A	A	83791716	1	1	116	0	1	0	0	0	0	0	0	0	16095	928	32	3		3	TM6SF1	15	83791716	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	350795	83791716	18739676	1608	110604											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84566611	84566611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttttcttctttgaagtGcacagtgacttgtggccgag	10	9	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84566611	T	T	84566611	3	4	116	1	0	0	0	0	1	0	0	0	276	1333	46	3	1519	3	ADAMTSL3	15	84566611	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	774895	84566611	17964781	1609	110605											
NTRK3	4916	broad.mit.edu	37	chr15	88476269	88476269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttattcaggtctccatgCttcatgtattcaaagaccat	5	10	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88476269	A	A	88476269	3	1	116	1	0	0	0	0	1	0	0	0	10803	796	28	3	676	3	NTRK3	15	88476269	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3909658	88476269	14055123	1610	110606											
ACAN	176	broad.mit.edu	37	chr15	89391305	89391305	+	Intron	DEL	G	-	-													tcacatttcgggccctagatGggcagggggtgggcagggag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89391305	-	-	89391305	6	5	116	0	1	1	0	1	0	0	0	0	117	1363	47	0		0	ACAN	15	89391305	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	915036	89391305	13140087	1611	110607											
ASB7	140460	broad.mit.edu	37	chr15	101170046	101170046	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttcagagaggggcagacAcaaacttgggtcgcttagaa	12	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101170046	T	T	101170046	3	4	116	1	0	0	0	0	1	0	0	0	1032	159	6	5	622	5	ASB7	15	101170046	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	11778741	101170046	1361346	1612	110608											
AXIN1	8312	broad.mit.edu	37	chr16	347698	347698	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcctcaccccaagccccctCctcactgacaggcgcacgct	7	21	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	347698	A	A	347698	1	1	116	0	1	0	0	0	0	0	0	0	1241	870	30	3		3	AXIN1	16	347698	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08		347698	90007055	1613	110609											
PIGQ	9091	broad.mit.edu	37	chr16	629048	629048	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcggggcggggccgggccCgacagcactgcgtcctgtag	20	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	629048	T	T	629048	1	4	116	0	1	0	0	0	0	0	0	0	11991	667	23	4		4	PIGQ	16	629048	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	281350	629048	89725705	1614	110610											
PIGQ	9091	broad.mit.edu	37	chr16	630780	630780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctctgggcccccttcatcGtggcccaggatggggtcgga	15	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	630780	T	T	630780	1	4	116	0	1	0	0	0	0	0	0	0	11991	1160	40	3		3	PIGQ	16	630780	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1732	630780	89723973	1615	110611											
SSTR5	6755	broad.mit.edu	37	chr16	1128926	1128926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcctcctccccgggggctGcctctggaggcggtgacaac	14	16	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1128926	T	T	1128926	3	4	116	1	0	0	0	0	1	0	0	0	15319	1319	46	3	60	3	SSTR5	16	1128926	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	498146	1128926	89225827	1616	110612											
C1QTNF8	390664	broad.mit.edu	37	chr16	1143871	1143871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaccgcctggaagtggtcgGagctgtgcaggccctcgcgc	16	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1143871	T	T	1143871	3	4	116	1	0	0	0	0	1	0	0	0	1989	1174	41	3	373	3	C1QTNF8	16	1143871	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	14945	1143871	89210882	1617	110613											
CACNA1H	8912	broad.mit.edu	37	chr16	1255228	1255228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggctacatccggaacCcgtacaacatcttcgacggc	9	15	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1255228	A	A	1255228	3	1	116	1	0	0	0	0	1	0	0	0	2571	623	22	2	2604	2	CACNA1H	16	1255228	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	111357	1255228	89099525	1618	110614											
RPL3L	6123	broad.mit.edu	37	chr16	2001035	2001035	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaccggggcagctccccagGcctatcctgcccccacctca	8	21	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2001035	C	C	2001035	1	2	116	0	1	0	0	0	0	0	0	0	13705	1218	42	4		4	RPL3L	16	2001035	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	745807	2001035	88353718	1619	110615											
ZNF598	90850	broad.mit.edu	37	chr16	2049685	2049685	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccctcggctctgctgGcaggagcttccggggcctgc	15	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2049685	A	A	2049685	3	1	116	1	0	0	0	0	1	0	0	0	18155	1203	42	4	865	4	ZNF598	16	2049685	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	48650	2049685	88305068	1620	110616											
CASKIN1	57524	broad.mit.edu	37	chr16	2239583	2239583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggggggcgaggggatGctgggagctgacccttgacc	19	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2239583	T	T	2239583	1	4	116	0	1	0	0	0	0	0	0	0	2692	1334	46	3		3	CASKIN1	16	2239583	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	189898	2239583	88115170	1621	110617											
E4F1	1877	broad.mit.edu	37	chr16	2279719	2279719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcctgatagaccttcgtGgttggggccagaggatgggg	18	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2279719	T	T	2279719	1	4	116	0	1	0	0	0	0	0	0	0	4914	1363	47	2		2	E4F1	16	2279719	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	40136	2279719	88075034	1622	110618											
SRRM2	23524	broad.mit.edu	37	chr16	2818920	2818920	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcacccctccccccactGccgttcctccaggccaagga	8	21	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2818920	C	C	2818920	1	2	116	0	1	0	0	0	0	0	0	0	15287	1334	46	4		4	SRRM2	16	2818920	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	539201	2818920	87535833	1623	110619											
IL32	9235	broad.mit.edu	37	chr16	3119200	3119200	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagaaggtggtggccctGgtccatgcagtgcaggccct	16	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3119200	T	T	3119200	2	4	116	1	0	0	0	0	0	0	0	1	7762	1335	47	2		2	IL32	16	3119200	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	300280	3119200	87235553	1624	110620											
IL32	9235	broad.mit.edu	37	chr16	3119312	3119312	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccacggggggacaaggagGagctgacaccccagaagtgc	15	13	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3119312	T	T	3119312	4	4	116	1	0	0	0	0	0	1	0	0	7762	1175	41	3	545	3	IL32	16	3119312	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	112	3119312	87235441	1625	110621											
ZNF205	7755	broad.mit.edu	37	chr16	3169232	3169232	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttagggaagctcgtccctaGctggaaacgactttcttttt	9	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3169232	C	C	3169232	1	2	116	0	1	0	0	0	0	0	0	0	17890	986	34	4		4	ZNF205	16	3169232	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	49920	3169232	87185521	1626	110622											
SEC14L5	9717	broad.mit.edu	37	chr16	5055988	5055988	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagcaactaccagggacccgGaggccttgtggactatctgg	13	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5055988	C	C	5055988	3	2	116	1	0	0	0	0	1	0	0	0	14098	1174	41	4	1418	4	SEC14L5	16	5055988	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1886756	5055988	85298765	1627	110623											
NAGPA	51172	broad.mit.edu	37	chr16	5081741	5081741	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgccaacagcctccccatCcaacctgtctcctgtgtctc	6	18	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5081741	A	A	5081741	1	1	116	0	1	0	0	0	0	0	0	0	10238	870	30	3		3	NAGPA	16	5081741	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	25753	5081741	85273012	1628	110624											
A2BP1	54715	broad.mit.edu	37	chr16	7382936	7382936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcggaagaagttgggtctAtagatttccccctaactctc	9	10	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7382936	G	G	7382936	1	3	116	0	1	0	0	0	0	0	0	0	3	464	16	5		5	A2BP1	16	7382936	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	2301195	7382936	82971817	1629	110625											
ERCC4	2072	broad.mit.edu	37	chr16	14041959	14041959	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccattacagcagattctGaaacccttcccgagtcagag	9	12	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14041959	A	A	14041959	3	1	116	1	0	0	0	0	1	0	0	0	5257	1291	45	4	2548	4	ERCC4	16	14041959	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6659023	14041959	76312794	1630	110626											
MYH11	4629	broad.mit.edu	37	chr16	15831439	15831439	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcttccgtttcagcttctCcagctcctgtcggctcttct	7	16	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15831439	A	A	15831439	4	1	116	1	0	0	0	0	0	1	0	0	10125	864	30	3	2861	3	MYH11	16	15831439	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1789480	15831439	74523314	1631	110627											
MYH11	4629	broad.mit.edu	37	chr16	15838948	15838948	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagtgaagaagcagggctGggggcccctgggaagggggc	21	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15838948	C	C	15838948	1	2	116	0	1	0	0	0	0	0	0	0	10125	1363	47	4		4	MYH11	16	15838948	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	7509	15838948	74515805	1632	110628											
NOMO3	408050	broad.mit.edu	37	chr16	16364154	16364154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttctgaaagaggcaagGttaggccttcaacagcattt	9	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16364154	T	T	16364154	1	4	116	0	1	0	0	0	0	0	0	0	10628	1276	44	3		3	NOMO3	16	16364154	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	525206	16364154	73990599	1633	110629											
XYLT1	64131	broad.mit.edu	37	chr16	17291967	17291967	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctatcctgagcgatcctgtGgagactatgcatcagtctcc	9	13	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17291967	C	C	17291967	1	2	116	0	1	0	0	0	0	0	0	0	17590	1363	47	4		4	XYLT1	16	17291967	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	927813	17291967	73062786	1634	110630											
ACSM2A	123876	broad.mit.edu	37	chr16	20497976	20497976	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagacaaggagtggaagatGtccggaaaagcccgtgcgca	15	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20497976	A	A	20497976	3	1	116	1	0	0	0	0	1	0	0	0	183	1377	48	4	1760	4	ACSM2A	16	20497976	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3206009	20497976	69856777	1635	110631											
ERI2	112479	broad.mit.edu	37	chr16	20873370	20873370	+	Intron	DEL	C	-	-													atcctagctgggcaccactgCccaatgctgttccctttcct							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20873370	-	-	20873370	6	5	116	0	1	1	0	1	0	0	0	0	5270	754	26	0		0	ERI2	16	20873370	Intron	DEL	C	TCGA-44-3918-01A-01D-1105-08	375394	20873370	69481383	1636	110632											
OTOA	146183	broad.mit.edu	37	chr16	21692968	21692968	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctaacacccctggtccatCcctacctgtcccctgggcac	6	20	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21692968	A	A	21692968	1	1	116	0	1	0	0	0	0	0	0	0	11396	870	30	3		3	OTOA	16	21692968	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	819598	21692968	68661785	1637	110633											
UQCRC2	7385	broad.mit.edu	37	chr16	21994458	21994459	+	Frame_Shift_Ins	INS	-	T	T													tcaatggcagcaagtggaaaINStttgggacatacaccttttg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21994459	T	T	21994458	7	5	116	1	0	1	1	0	0	0	0	0	17146	101	4	0	1382	0	UQCRC2	16	21994458	Frame_Shift_Ins	INS	-	TCGA-44-3918-01A-01D-1105-08	301490	21994458	68360295	1638	110634											
USP31	57478	broad.mit.edu	37	chr16	23119414	23119414	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactgaatggttgaggtcttCatgaactcggtccaaaagcc	10	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23119414	T	T	23119414	3	4	116	1	0	0	0	0	1	0	0	0	17189	835	29	4	3394	4	USP31	16	23119414	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1124956	23119414	67235339	1639	110635											
ERN2	10595	broad.mit.edu	37	chr16	23721427	23721427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccatactgcctctccacCtctcagtgctccagctgacg	7	17	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23721427	A	A	23721427	1	1	116	0	1	0	0	0	0	0	0	0	5280	696	24	2		2	ERN2	16	23721427	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	602013	23721427	66633326	1640	110636											
PRKCB	5579	broad.mit.edu	37	chr16	24196597	24196597	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagaatgcatgtttggtaaCagctcataaattggaacctc	10	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24196597	G	G	24196597	1	3	116	0	1	0	0	0	0	0	0	0	12614	493	17	4		4	PRKCB	16	24196597	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	475170	24196597	66158156	1641	110637											
CACNG3	10368	broad.mit.edu	37	chr16	24268293	24268293	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgcctagaaggtatttAcaatttcctctcaatagctc	6	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24268293	C	C	24268293	1	2	116	0	1	0	0	0	0	0	0	0	2584	406	14	5		5	CACNG3	16	24268293	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	71696	24268293	66086460	1642	110638											
CACNG3	10368	broad.mit.edu	37	chr16	24366360	24366360	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagccagggccacatggagGaagcaatgctactcagggct	14	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24366360	A	A	24366360	1	1	116	0	1	0	0	0	0	0	0	0	2584	1189	41	4		4	CACNG3	16	24366360	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	98067	24366360	65988393	1643	110639											
RBBP6	5930	broad.mit.edu	37	chr16	24580457	24580457	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcatattatgggagaagtGttgactttagagacccattt	10	5	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24580457	A	A	24580457	3	1	116	1	0	0	0	0	1	0	0	0	13211	1377	48	4	2566	4	RBBP6	16	24580457	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	214097	24580457	65774296	1644	110640											
IL21R	50615	broad.mit.edu	37	chr16	27456476	27456476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagttggtgccatttaacCctttctttgcttccttccca	6	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27456476	A	A	27456476	1	1	116	0	1	0	0	0	0	0	0	0	7741	638	22	2		2	IL21R	16	27456476	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2876019	27456476	62898277	1645	110641											
GSG1L	146395	broad.mit.edu	37	chr16	27802640	27802641	+	3'UTR	DNP	GG	TT	TT													ctctggtggtcttgcagcagGggctggtgccagcgatggcc					rs62029147	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	27802641	TT	TT	27802640	1	4	116	0	1	0	0	0	0	0	0	0	6887	1247	43	2		2	GSG1L	16	27802640	3'UTR	DNP	GG	TCGA-44-3918-01A-01D-1105-08	346164	27802640	62552113	1646	110642											
SPNS1	83985	broad.mit.edu	37	chr16	28993606	28993606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccttggttgtgagggtgGctaggatggacagcgtaggg	20	5	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28993606	T	T	28993606	1	4	116	0	1	0	0	0	0	0	0	0	15192	1218	42	3		3	SPNS1	16	28993606	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1190966	28993606	61361147	1647	110643											
TAOK2	9344	broad.mit.edu	37	chr16	29989365	29989365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaagtcttcccatgccCggctctcaatggggccttca	9	16	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29989365	T	T	29989365	1	4	116	0	1	0	0	0	0	0	0	0	15667	667	23	4		4	TAOK2	16	29989365	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	995759	29989365	60365388	1648	110644											
HSD3B7	80270	broad.mit.edu	37	chr16	30997686	30997686	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctggacctgggatggggaGgaggaagatgcagagaggga	20	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30997686	C	C	30997686	1	2	116	0	1	0	0	0	0	0	0	0	7459	1015	35	4		4	HSD3B7	16	30997686	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1008321	30997686	59357067	1649	110645											
ITGAM	3684	broad.mit.edu	37	chr16	31277255	31277255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggtgtttgggggcccaCgcatggtggggctgggggtc	23	7	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31277255	A	A	31277255	1	1	116	0	1	0	0	0	0	0	0	0	7957	551	19	3		3	ITGAM	16	31277255	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	279569	31277255	59077498	1650	110646											
ITGAX	3687	broad.mit.edu	37	chr16	31392121	31392121	+	Intron	DEL	G	-	-													cacctcttggagcagggcctGgggaaggaggggagggagtt							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31392121	-	-	31392121	6	5	116	0	1	1	0	1	0	0	0	0	7959	1363	47	0		0	ITGAX	16	31392121	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	114866	31392121	58962632	1651	110647											
ITGAD	3681	broad.mit.edu	37	chr16	31421713	31421713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctggaattctttcctccCaggatggcctcttcctgggg	11	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31421713	A	A	31421713	1	1	116	0	1	0	0	0	0	0	0	0	7954	609	21	2		2	ITGAD	16	31421713	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	29592	31421713	58933040	1652	110648											
C16orf58	64755	broad.mit.edu	37	chr16	31510740	31510740	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaagcctggggagggaTcagaggttagaggtcagagg	18	5	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31510740	C	C	31510740	1	2	116	0	1	0	0	0	0	0	0	0	1836	1450	50	5		5	C16orf58	16	31510740	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	89027	31510740	58844013	1653	110649											
ZNF423	23090	broad.mit.edu	37	chr16	49525138	49525138	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaatggccctccccacgGcgtctccggcaagccttctg	9	17	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49525138	T	T	49525138	1	4	116	0	1	0	0	0	0	0	0	0	18025	1218	42	3		3	ZNF423	16	49525138	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	18014398	49525138	40829615	1654	110650											
ZNF423	23090	broad.mit.edu	37	chr16	49670403	49670403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccccacagatgtcacagCcgtacatgggctccgacgcg	11	17	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49670403	A	A	49670403	3	1	116	1	0	0	0	0	1	0	0	0	18025	739	26	3	1214	3	ZNF423	16	49670403	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	145265	49670403	40684350	1655	110651											
ZNF423	23090	broad.mit.edu	37	chr16	49671148	49671148	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaagttggagaacttgaGgtcgcattgattgcaaggat	12	6	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49671148	A	A	49671148	3	1	116	1	0	0	0	0	1	0	0	0	18025	1000	35	4	1959	4	ZNF423	16	49671148	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	745	49671148	40683605	1656	110652											
MMP2	4313	broad.mit.edu	37	chr16	55530894	55530894	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggggcccctgctggtggCcacattctggcctgagctcc	13	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55530894	T	T	55530894	3	4	116	1	0	0	0	0	1	0	0	0	9751	739	26	4	1574	4	MMP2	16	55530894	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	5859746	55530894	34823859	1657	110653											
NLRC5	84166	broad.mit.edu	37	chr16	57085289	57085289	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaacttaaaagaccttcctCttcttccagcctcacggata	4	14	3	1	rs116230020	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57085289	T	T	57085289	1	4	116	0	1	0	0	0	0	0	0	0	10565	928	32	4		4	NLRC5	16	57085289	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1554395	57085289	33269464	1658	110654											
NLRC5	84166	broad.mit.edu	37	chr16	57100529	57100529	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagctgtggcactcaggtGggacccagcaccagggaccc	14	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57100529	A	A	57100529	1	1	116	0	1	0	0	0	0	0	0	0	10565	1363	47	4		4	NLRC5	16	57100529	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	15240	57100529	33254224	1659	110655											
CCL22	6367	broad.mit.edu	37	chr16	57392777	57392777	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcctcgtcctccttgctGtggcgcttcaagcaactgag	10	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57392777	A	A	57392777	3	1	116	1	0	0	0	0	1	0	0	0	2922	1377	48	4	51	4	CCL22	16	57392777	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	292248	57392777	32961976	1660	110656											
CNGB1	1258	broad.mit.edu	37	chr16	57994668	57994668	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggtggggacagcctgctgGaggaggcagtccctcctggg	19	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57994668	A	A	57994668	1	1	116	0	1	0	0	0	0	0	0	0	3632	1189	41	4		4	CNGB1	16	57994668	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	601891	57994668	32360085	1661	110657											
PRSS54	221191	broad.mit.edu	37	chr16	58314359	58314359	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagtcgtgaatgcgtgatGgtccttctttgtccctgcaa	10	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58314359	T	T	58314359	2	4	116	1	0	0	0	0	0	0	0	1	12739	1335	47	2		2	PRSS54	16	58314359	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	319691	58314359	32040394	1662	110658											
CDH5	1003	broad.mit.edu	37	chr16	66436898	66436898	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggccccccctacgacacGctgcacatctacggctacga	9	18	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66436898	T	T	66436898	2	4	116	1	0	0	0	0	0	0	0	1	3143	1074	38	3		3	CDH5	16	66436898	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	8122539	66436898	23917855	1663	110659											
CES2	8824	broad.mit.edu	37	chr16	66976710	66976710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtcttcttcctttcccgGgaggtgggctgggattctgg	15	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66976710	T	T	66976710	1	4	116	0	1	0	0	0	0	0	0	0	3300	1247	43	2		2	CES2	16	66976710	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	539812	66976710	23378043	1664	110660											
C16orf70	80262	broad.mit.edu	37	chr16	67154014	67154014	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtcttgctttatttcaGgaatgcctctggctcaggca	11	9	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67154014	T	T	67154014	5	4	116	1	0	0	0	0	0	0	1	0	1843	1014	35	2	70	2	C16orf70	16	67154014	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	177304	67154014	23200739	1665	110661											
CTCF	10664	broad.mit.edu	37	chr16	67654636	67654636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacattcgctctcatactGgagagcgtccgtttcagtgc	10	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67654636	A	A	67654636	3	1	116	1	0	0	0	0	1	0	0	0	4034	1349	47	4	1137	4	CTCF	16	67654636	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	500622	67654636	22700117	1666	110662											
RLTPR	146206	broad.mit.edu	37	chr16	67680346	67680346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagctattccggaggcCcacaccagcctccatgctgg	11	15	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67680346	A	A	67680346	3	1	116	1	0	0	0	0	1	0	0	0	13505	623	22	2	414	2	RLTPR	16	67680346	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	25710	67680346	22674407	1667	110663											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67860159	67860159	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattggttcggggctgctgCgggagaaagacttcttccct	14	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67860159	A	A	67860159	2	1	116	1	0	0	0	0	0	0	0	1	16757	759	27	3		3	TSNAXIP1	16	67860159	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	179813	67860159	22494594	1668	110664											
CDH1	999	broad.mit.edu	37	chr16	68853411	68853411	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcccttcttttggagggaaGagttcattctttttctttta	7	8	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68853411	T	T	68853411	1	4	116	0	1	0	0	0	0	0	0	0	3125	957	33	3		3	CDH1	16	68853411	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	993252	68853411	21501342	1669	110665											
HYDIN	54768	broad.mit.edu	37	chr16	70934909	70934909	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggatgtgtgaagcctcacctCcaaccgaatagccttcttga	9	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70934909	A	A	70934909	4	1	116	1	0	0	0	0	0	1	0	0	7537	864	30	3	6455	3	HYDIN	16	70934909	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2081498	70934909	19419844	1670	110666											
HYDIN	54768	broad.mit.edu	37	chr16	70935048	70935048	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagtgctccaggctggtgatCcgccaggccacaggcaggag	15	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70935048	G	G	70935048	2	3	116	1	0	0	0	0	0	0	0	1	7537	842	30	4		4	HYDIN	16	70935048	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	139	70935048	19419705	1671	110667											
WDR59	79726	broad.mit.edu	37	chr16	74908369	74908369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggcagggacgggcaaaaCaagaggcagcatgagtttag	16	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74908369	A	A	74908369	1	1	116	0	1	0	0	0	0	0	0	0	17435	493	17	3		3	WDR59	16	74908369	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3973321	74908369	15446384	1672	110668											
WDR59	79726	broad.mit.edu	37	chr16	74951953	74951953	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaattcttctggattcaacGtctatttgctagaggttgaa	9	6	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74951953	A	A	74951953	1	1	116	0	1	0	0	0	0	0	0	0	17435	1160	40	4		4	WDR59	16	74951953	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	43584	74951953	15402800	1673	110669											
GAN	8139	broad.mit.edu	37	chr16	81391423	81391423	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacttccttagttcacggaAacccacagcagcgatgcgat	8	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81391423	G	G	81391423	3	3	116	1	0	0	0	0	1	0	0	0	6294	14	1	5	878	5	GAN	16	81391423	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	6439470	81391423	8963330	1674	110670											
CMIP	80790	broad.mit.edu	37	chr16	81735260	81735260	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgcacccctgcggttctgGacagatcctgtgcttgatgc	11	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81735260	T	T	81735260	1	4	116	0	1	0	0	0	0	0	0	0	3610	1189	41	3		3	CMIP	16	81735260	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	343837	81735260	8619493	1675	110671											
DEF8	54849	broad.mit.edu	37	chr16	90025465	90025465	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccgagtgctccttgagcAccgcttttacaaggagaaga	10	11	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90025465	T	T	90025465	3	4	116	1	0	0	0	0	1	0	0	0	4420	159	6	5	617	5	DEF8	16	90025465	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	8290205	90025465	329288	1676	110672											
DEF8	54849	broad.mit.edu	37	chr16	90028432	90028432	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggcaggtttctcgctgcAgcatgcgctacctggcgctg	13	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90028432	T	T	90028432	3	4	116	1	0	0	0	0	1	0	0	0	4420	188	7	5	1113	5	DEF8	16	90028432	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	2967	90028432	326321	1677	110673											
NXN	64359	broad.mit.edu	37	chr17	729321	729321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgttccaaagtttgagctGtatgaagaaaagcaaaagaa	9	4	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	729321	A	A	729321	1	1	116	0	1	0	0	0	0	0	0	0	10882	1392	48	4		4	NXN	17	729321	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08		729321	80465889	1678	110674											
ABR	29	broad.mit.edu	37	chr17	915336	915336	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttctagcatttgggatggaGagctggggcgggggcagggg	21	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	915336	C	C	915336	1	2	116	0	1	0	0	0	0	0	0	0	99	957	33	4		4	ABR	17	915336	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	186015	915336	80279874	1679	110675											
SLC43A2	124935	broad.mit.edu	37	chr17	1479966	1479966	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagggcgaagagcgcgctGatcagagactgcagtcccgt	15	10	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1479966	A	A	1479966	2	1	116	1	0	0	0	0	0	0	0	1	14747	1280	45	4		4	SLC43A2	17	1479966	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	564630	1479966	79715244	1680	110676											
METT10D	79066	broad.mit.edu	37	chr17	2405749	2405749	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaaggtaagtagatcacctGattcaggagttcaagaccat	9	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2405749	A	A	2405749	1	1	116	0	1	0	0	0	0	0	0	0	9583	1305	45	4		4	METT10D	17	2405749	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	925783	2405749	78789461	1681	110677											
ZZEF1	23140	broad.mit.edu	37	chr17	3917899	3917899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagtcctgtggctggaccCgggtgtgtgagaatgagtga	17	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3917899	A	A	3917899	1	1	116	0	1	0	0	0	0	0	0	0	18384	667	23	1		1	ZZEF1	17	3917899	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1512150	3917899	77277311	1682	110678											
ZZEF1	23140	broad.mit.edu	37	chr17	3954271	3954271	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggatatatggctggatgagCctctgccggtcactgatccg	13	10	2	2	rs79012370	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3954271	G	G	3954271	3	3	116	1	0	0	0	0	1	0	0	0	18384	738	26	4	3298	4	ZZEF1	17	3954271	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	36372	3954271	77240939	1683	110679											
ALOX15	246	broad.mit.edu	37	chr17	4536632	4536632	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagaagtgagggtgagcagGgtcaggcgaatcgacctgcc	17	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4536632	A	A	4536632	1	1	116	0	1	0	0	0	0	0	0	0	538	1247	43	4		4	ALOX15	17	4536632	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	582361	4536632	76658578	1684	110680											
USP6	9098	broad.mit.edu	37	chr17	5039031	5039031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcacctctgccctctccaaTgacatgagtcctcccaggtg	8	16	3	2	rs138606900	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5039031	C	C	5039031	1	2	116	0	1	0	0	0	0	0	0	0	17213	1479	51	5		5	USP6	17	5039031	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	502399	5039031	76156179	1685	110681											
ALOX12	239	broad.mit.edu	37	chr17	6902727	6902727	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgacctctctgccctccaGgctagtgctgccctcgggga	11	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6902727	A	A	6902727	3	1	116	1	0	0	0	0	1	0	0	0	536	1000	35	4	771	4	ALOX12	17	6902727	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1863696	6902727	74292483	1686	110682											
CLEC10A	10462	broad.mit.edu	37	chr17	6978391	6978391	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagtgactctcctggctGgtctgacccaggccagcctc	11	16	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6978391	T	T	6978391	2	4	116	1	0	0	0	0	0	0	0	1	3527	1335	47	2		2	CLEC10A	17	6978391	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	75664	6978391	74216819	1687	110683											
ACAP1	9744	broad.mit.edu	37	chr17	7253566	7253567	+	Intron	DNP	CC	AT	AT													atcgtcaccctgtaagaatgCctgaaggggcggggctggcg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	7253567	AT	AT	7253566	1	1	116	0	1	0	0	0	0	0	0	0	118	754	26	3		3	ACAP1	17	7253566	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	275175	7253566	73941644	1688	110684											
POLR2A	5430	broad.mit.edu	37	chr17	7405852	7405853	+	Missense_Mutation	DNP	GG	TT	TT													tccaggatacatccagcggcGgctgatcaagtccatggagt					rs148495191	byFrequency;by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	7405853	TT	TT	7405852	3	4	116	1	0	0	0	0	1	0	0	0	12309	1116	39	1	2650	1	POLR2A	17	7405852	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	152286	7405852	73789358	1689	110685											
FXR2	9513	broad.mit.edu	37	chr17	7497649	7497649	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctggatcactttcccgttCtttccaatcactttgcctgg	6	14	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7497649	G	G	7497649	3	3	116	1	0	0	0	0	1	0	0	0	6176	912	32	4	1026	4	FXR2	17	7497649	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	91797	7497649	73697561	1690	110686											
TP53	7157	broad.mit.edu	37	chr17	7576928	7576928	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgttgttgggcagtgcTaggaaagaggcaaggaaagg	18	4	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7576928	C	C	7576928	5	2	116	1	0	0	0	0	0	0	1	0	16505	1536	53	5	364	5	TP53	17	7576928	Splice_Site	SNP	T	TCGA-44-3918-01A-01D-1105-08	79279	7576928	73618282	1691	110687											
CHD3	1107	broad.mit.edu	37	chr17	7806546	7806546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatgggcagcttctccccGgccactcccctgacccaccc	7	21	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7806546	T	T	7806546	1	4	116	0	1	0	0	0	0	0	0	0	3357	1131	39	1		1	CHD3	17	7806546	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	229618	7806546	73388664	1692	110688											
PFAS	5198	broad.mit.edu	37	chr17	8159986	8159986	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgagctgggttccctggaGaaataggtgagatcacagaa	15	6	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8159986	A	A	8159986	1	1	116	0	1	0	0	0	0	0	0	0	11849	957	33	4		4	PFAS	17	8159986	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	353440	8159986	73035224	1693	110689											
PIK3R6	146850	broad.mit.edu	37	chr17	8753154	8753154	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggatgtggttgtctcgGgcagcagaatagagaacaag	16	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8753154	T	T	8753154	1	4	116	0	1	0	0	0	0	0	0	0	12018	1247	43	2		2	PIK3R6	17	8753154	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	593168	8753154	72442056	1694	110690											
STX8	9482	broad.mit.edu	37	chr17	9281762	9281762	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaatggaactgcctgtatCagaagagcaaccaaatcccc	7	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9281762	G	G	9281762	1	3	116	0	1	0	0	0	0	0	0	0	15469	841	29	4		4	STX8	17	9281762	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	528608	9281762	71913448	1695	110691											
MYH13	8735	broad.mit.edu	37	chr17	10219042	10219042	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccatttgcctcttaagctCctccagctgctgggtgaggg	11	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10219042	A	A	10219042	4	1	116	1	0	0	0	0	0	1	0	0	10126	864	30	3	1916	3	MYH13	17	10219042	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	937280	10219042	70976168	1696	110692											
MYH8	4626	broad.mit.edu	37	chr17	10303891	10303891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcttcatgctgcagggtgGcctcctccaggtccctgcgc	12	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10303891	T	T	10303891	3	4	116	1	0	0	0	0	1	0	0	0	10135	1203	42	3	2318	3	MYH8	17	10303891	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	84849	10303891	70891319	1697	110693											
MYH4	4622	broad.mit.edu	37	chr17	10351909	10351925	+	Intron	DEL	GAAATAGAATGATTACA	-	-													gatgtctccctaccatttttGaaatagaatgattacagtga							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10351925	-	-	10351909	6	5	116	0	1	1	0	1	0	0	0	0	10131	1305	45	0		0	MYH4	17	10351909	Intron	DEL	GAAATAGAATGATTACA	TCGA-44-3918-01A-01D-1105-08	48018	10351909	70843301	1698	110694											
MYH2	4620	broad.mit.edu	37	chr17	10435343	10435343	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgaaaaaattctatttcggGatgatggtcaaggtcttgct	10	5	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10435343	C	C	10435343	1	2	116	0	1	0	0	0	0	0	0	0	10129	1189	41	4		4	MYH2	17	10435343	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	83434	10435343	70759867	1699	110695											
DNAH9	1770	broad.mit.edu	37	chr17	11696994	11696994	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttgatgtgagtattgccCtatggattttctttgtattt	8	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11696994	T	T	11696994	1	4	116	0	1	0	0	0	0	0	0	0	4648	696	24	4		4	DNAH9	17	11696994	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1261651	11696994	69498216	1700	110696											
DNAH9	1770	broad.mit.edu	37	chr17	11786980	11786980	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttctctctcgcctctcCtccgcctctgggaacttcct	6	18	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11786980	A	A	11786980	2	1	116	1	0	0	0	0	0	0	0	1	4648	668	24	2		2	DNAH9	17	11786980	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	89986	11786980	69408230	1701	110697											
ZNF18	7566	broad.mit.edu	37	chr17	11882103	11882103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatggttcaagtgctatgCcctgttttctaactcatatg	8	8	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11882103	A	A	11882103	1	1	116	0	1	0	0	0	0	0	0	0	17873	754	26	3		3	ZNF18	17	11882103	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	95123	11882103	69313107	1702	110698											
MYOCD	93649	broad.mit.edu	37	chr17	12649219	12649219	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgattgtacttgaaatgcctCtttgtttgttttttagggaa	9	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12649219	G	G	12649219	1	3	116	0	1	0	0	0	0	0	0	0	10181	928	32	4		4	MYOCD	17	12649219	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	767116	12649219	68545991	1703	110699											
MYOCD	93649	broad.mit.edu	37	chr17	12656507	12656507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctcagcccccagtgttcCcctcagcattcaccgctggg	8	17	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12656507	A	A	12656507	2	1	116	1	0	0	0	0	0	0	0	1	10181	610	22	2		2	MYOCD	17	12656507	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	7288	12656507	68538703	1704	110700											
RICH2	9912	broad.mit.edu	37	chr17	12862139	12862139	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggaccctgctgaccggcGccagcccgagcaggcccgcc	13	19	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12862139	T	T	12862139	3	4	116	1	0	0	0	0	1	0	0	0	13466	1087	38	3	1510	3	RICH2	17	12862139	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	205632	12862139	68333071	1705	110701											
TRPV2	51393	broad.mit.edu	37	chr17	16321156	16321156	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcagataagagtcaacctCaactaccgaaagggaacagg	9	11	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16321156	G	G	16321156	2	3	116	1	0	0	0	0	0	0	0	1	16721	813	29	4		4	TRPV2	17	16321156	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	3459017	16321156	64874054	1706	110702											
UNC119	9094	broad.mit.edu	37	chr17	26874688	26874688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcccagaagaccctgccCgcgcactcagctcctcggag	9	19	1	2	rs148433825		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26874688	A	A	26874688	1	1	116	0	1	0	0	0	0	0	0	0	17108	652	23	1		1	UNC119	17	26874688	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	10553532	26874688	54320522	1707	110703											
ABHD15	116236	broad.mit.edu	37	chr17	27893424	27893424	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgatggaagatgaccggGtagtagccgcgctccagggc	17	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27893424	T	T	27893424	4	4	116	1	0	0	0	0	0	1	0	0	81	1256	44	3	853	3	ABHD15	17	27893424	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1018736	27893424	53301786	1708	110704											
EFCAB5	374786	broad.mit.edu	37	chr17	28434942	28434942	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcagctctcatgaagaTaaccaaacaactaaatagtg	6	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28434942	C	C	28434942	3	2	116	1	0	0	0	0	1	0	0	0	4978	1406	49	5	4669	5	EFCAB5	17	28434942	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	541518	28434942	52760268	1709	110705											
SLC6A4	6532	broad.mit.edu	37	chr17	28530083	28530083	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catacatatatagggttgcaTgcctcctggtgaatctcatt	8	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28530083	A	A	28530083	1	1	116	0	1	0	0	0	0	0	0	0	14800	1479	51	5		5	SLC6A4	17	28530083	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	95141	28530083	52665127	1710	110706											
NF1	4763	broad.mit.edu	37	chr17	29557278	29557278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttctatgtctatatagGtatgttcgtgtgcttgggaa	11	4	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29557278	T	T	29557278	3	4	116	1	0	0	0	0	1	0	0	0	10451	1275	44	3	3142	3	NF1	17	29557278	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1027195	29557278	51637932	1711	110707											
EVI2B	2124	broad.mit.edu	37	chr17	29631301	29631301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttataacagttctgcaggtgGaggtggcagggattcattaa	13	5	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29631301	T	T	29631301	3	4	116	1	0	0	0	0	1	0	0	0	5330	1174	41	3	23	3	EVI2B	17	29631301	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	74023	29631301	51563909	1712	110708											
TMEM98	26022	broad.mit.edu	37	chr17	31266350	31266350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagaatcacttgagcctGggaggtggatgttgcagtga	16	6	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31266350	T	T	31266350	1	4	116	0	1	0	0	0	0	0	0	0	16348	1363	47	2		2	TMEM98	17	31266350	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1635049	31266350	49928860	1713	110709											
TMEM132E	124842	broad.mit.edu	37	chr17	32956990	32956990	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgtcccaggacagaagggGaccacaagtagagccccccc	12	14	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32956990	T	T	32956990	1	4	116	0	1	0	0	0	0	0	0	0	16171	1189	41	3		3	TMEM132E	17	32956990	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1690640	32956990	48238220	1714	110710											
UNC45B	146862	broad.mit.edu	37	chr17	33477307	33477307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcattcctagtaggaatGggttagggaggtgggtcatc	14	6	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33477307	T	T	33477307	1	4	116	0	1	0	0	0	0	0	0	0	17115	1363	47	2		2	UNC45B	17	33477307	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	520317	33477307	47717903	1715	110711											
UNC45B	146862	broad.mit.edu	37	chr17	33479761	33479762	+	Intron	DNP	TC	CA	CA													ttattaattcatcgtacttaTccagtaaatgtttgtcgaat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	33479762	CA	CA	33479761	1	2	116	0	1	0	0	0	0	0	0	0	17115	1450	50	5		5	UNC45B	17	33479761	Intron	DNP	TC	TCGA-44-3918-01A-01D-1105-08	2454	33479761	47715449	1716	110712											
LHX1	3975	broad.mit.edu	37	chr17	35300290	35300290	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagccccgagcccagcctGcccgggcctctgcactccat	9	22	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35300290	T	T	35300290	2	4	116	1	0	0	0	0	0	0	0	1	8842	1306	46	3		3	LHX1	17	35300290	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1820529	35300290	45894920	1717	110713											
GPR179	440435	broad.mit.edu	37	chr17	36485601	36485601	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctttttttgggagtcaCctgggtcttgtcttagtgcc	10	10	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36485601	T	T	36485601	3	4	116	1	0	0	0	0	1	0	0	0	6739	507	18	4	3256	4	GPR179	17	36485601	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1185311	36485601	44709609	1718	110714											
KRTAP9-2	83899	broad.mit.edu	37	chr17	39383032	39383032	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgccagcccgcctgCtgtgtgtccagctgctgcca	11	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39383032	A	A	39383032	4	1	116	1	0	0	0	0	0	1	0	0	8645	805	28	3	128	3	KRTAP9-2	17	39383032	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2897431	39383032	41812178	1719	110715											
KRTAP9-4	85280	broad.mit.edu	37	chr17	39406098	39406098	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgccagccctcctgCtgtgtttccagctgctgcca	9	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39406098	A	A	39406098	4	1	116	1	0	0	0	0	0	1	0	0	8647	805	28	3	128	3	KRTAP9-4	17	39406098	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	23066	39406098	41789112	1720	110716											
KRT35	3886	broad.mit.edu	37	chr17	39633777	39633778	+	Missense_Mutation	DNP	CC	AA	AA													cagtgatactcacttgctgtCctcactctccagcaggcccc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	39633778	AA	AA	39633777	3	1	116	1	0	0	0	0	1	0	0	0	8543	855	30	3	162	3	KRT35	17	39633777	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	227679	39633777	41561433	1721	110717											
KLHL10	317719	broad.mit.edu	37	chr17	39998215	39998215	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accggacaatgtggagaaacTgcttgctgctgcagaccagt	12	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39998215	A	A	39998215	3	1	116	1	0	0	0	0	1	0	0	0	8437	1580	55	5	341	5	KLHL10	17	39998215	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	364438	39998215	41196995	1722	110718											
TTC25	83538	broad.mit.edu	37	chr17	40091399	40091399	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgcaggagggtttggGctgcccttcccactccagct	11	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40091399	C	C	40091399	1	2	116	0	1	0	0	0	0	0	0	0	16819	1218	42	4		4	TTC25	17	40091399	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	93184	40091399	41103811	1723	110719											
EZH1	2145	broad.mit.edu	37	chr17	40865465	40865465	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccatcaccatattgatctCatcatcacaaactttcatct	2	14	6	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40865465	G	G	40865465	1	3	116	0	1	0	0	0	0	0	0	0	5376	841	29	4		4	EZH1	17	40865465	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	774066	40865465	40329745	1724	110720											
AARSD1	80755	broad.mit.edu	37	chr17	41105677	41105677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttggctaaactagcgcCcctcacttatgtctccctag	7	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41105677	A	A	41105677	1	1	116	0	1	0	0	0	0	0	0	0	21	638	22	2		2	AARSD1	17	41105677	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	240212	41105677	40089533	1725	110721											
SLC4A1	6521	broad.mit.edu	37	chr17	42337251	42337252	+	Missense_Mutation	DNP	TC	GT	GT													tgaaggatccccagagcgtgTcaggactgcaggcttcacac							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	42337252	GT	GT	42337251	3	3	116	1	0	0	0	0	1	0	0	0	14764	1667	58	5	2256	5	SLC4A1	17	42337251	Missense_Mutation	DNP	TC	TCGA-44-3918-01A-01D-1105-08	1231574	42337251	38857959	1726	110722											
EFTUD2	9343	broad.mit.edu	37	chr17	42930912	42930912	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaggcagagtagacgactctCctggctgtggggatgatctg	15	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42930912	G	G	42930912	3	3	116	1	0	0	0	0	1	0	0	0	5001	854	30	4	499	4	EFTUD2	17	42930912	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	593661	42930912	38264298	1727	110723											
MAPT	4137	broad.mit.edu	37	chr17	44077080	44077080	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgacgtcaccatgctgggtgGaggcagcacgtccaaatcta	12	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44077080	A	A	44077080	1	1	116	0	1	0	0	0	0	0	0	0	9389	1189	41	4		4	MAPT	17	44077080	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1146168	44077080	37118130	1728	110724											
KIAA1267	284058	broad.mit.edu	37	chr17	44159803	44159803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctttctatcttttatacTtaccaatttatcagtcccat	1	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44159803	A	A	44159803	1	1	116	0	1	0	0	0	0	0	0	0	8289	1624	56	5		5	KIAA1267	17	44159803	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	82723	44159803	37035407	1729	110725											
NSF	4905	broad.mit.edu	37	chr17	44788372	44788372	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgcaagttacattatgaAcggtatcatcaaatggggtg	10	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44788372	C	C	44788372	3	2	116	1	0	0	0	0	1	0	0	0	10766	43	2	5	1568	5	NSF	17	44788372	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	628569	44788372	36406838	1730	110726											
ITGB3	3690	broad.mit.edu	37	chr17	45360745	45360745	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctctgggctcacctcgctGtgacctgaaggagaatctgc	12	13	3	3	rs74554539		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45360745	C	C	45360745	3	2	116	1	0	0	0	0	1	0	0	0	7965	1377	48	4	201	4	ITGB3	17	45360745	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	572373	45360745	35834465	1731	110727											
IGF2BP1	10642	broad.mit.edu	37	chr17	47104011	47104011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgccttccttcctgcCtgccttcctgccttcctgcc	5	21	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47104011	T	T	47104011	1	4	116	0	1	0	0	0	0	0	0	0	7643	696	24	4		4	IGF2BP1	17	47104011	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1743266	47104011	34091199	1732	110728											
B4GALNT2	124872	broad.mit.edu	37	chr17	47236504	47236504	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcatttctaccagtgacCggaagctgttgaagttcatt	9	8	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47236504	A	A	47236504	2	1	116	1	0	0	0	0	0	0	0	1	1272	643	23	1		1	B4GALNT2	17	47236504	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	132493	47236504	33958706	1733	110729											
SLC35B1	10237	broad.mit.edu	37	chr17	47782381	47782381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatatggggacaaggagcaCcacaacctcccttgacacag	10	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47782381	A	A	47782381	1	1	116	0	1	0	0	0	0	0	0	0	14689	522	18	3		3	SLC35B1	17	47782381	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	545877	47782381	33412829	1734	110730											
SLC35B1	10237	broad.mit.edu	37	chr17	47783252	47783252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattggcttgcaggatttacCaaggacctgaaattaaatcc	9	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47783252	A	A	47783252	3	1	116	1	0	0	0	0	1	0	0	0	14689	594	21	2	646	2	SLC35B1	17	47783252	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	871	47783252	33411958	1735	110731											
ITGA3	3675	broad.mit.edu	37	chr17	48153965	48153965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtccagttccagaaggaGtgcgggcctgacaacaagtg	14	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48153965	T	T	48153965	3	4	116	1	0	0	0	0	1	0	0	0	7947	1020	36	3	1896	3	ITGA3	17	48153965	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	370713	48153965	33041245	1736	110732											
PPP1R9B	84687	broad.mit.edu	37	chr17	48222712	48222712	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagttacccaccccatgcctCcccatgatagccctgagatg	8	16	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48222712	A	A	48222712	1	1	116	0	1	0	0	0	0	0	0	0	12480	870	30	3		3	PPP1R9B	17	48222712	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	68747	48222712	32972498	1737	110733											
CACNA1G	8913	broad.mit.edu	37	chr17	48655739	48655739	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgcccagcacagcgacctCcgggacccccacagccggcg	12	19	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48655739	A	A	48655739	2	1	116	1	0	0	0	0	0	0	0	1	2570	842	30	3		3	CACNA1G	17	48655739	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	433027	48655739	32539471	1738	110734											
CA10	56934	broad.mit.edu	37	chr17	49730927	49730927	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccttttaatatttctaactCcaacagagaccgtaaattgg	5	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49730927	A	A	49730927	1	1	116	0	1	0	0	0	0	0	0	0	2537	870	30	3		3	CA10	17	49730927	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1075188	49730927	31464283	1739	110735											
LPO	4025	broad.mit.edu	37	chr17	56329887	56329887	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagtctagcctgggaacAgaagggcccaaggacaaggg	17	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56329887	T	T	56329887	1	4	116	0	1	0	0	0	0	0	0	0	9009	203	7	5		5	LPO	17	56329887	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	6598960	56329887	24865323	1740	110736											
HSF5	124535	broad.mit.edu	37	chr17	56553583	56553583	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccttctaatcaatatcttCtaatccttccttctcttcat	0	13	6	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56553583	T	T	56553583	1	4	116	0	1	0	0	0	0	0	0	0	7466	928	32	4		4	HSF5	17	56553583	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	223696	56553583	24641627	1741	110737											
C17orf47	284083	broad.mit.edu	37	chr17	56621194	56621194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactaactttccattgtctGcttgaagcatgggaagccag	11	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56621194	T	T	56621194	3	4	116	1	0	0	0	0	1	0	0	0	1874	1310	46	3	1366	3	C17orf47	17	56621194	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	67611	56621194	24574016	1742	110738											
TRIM37	4591	broad.mit.edu	37	chr17	57128685	57128685	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaagttggtgaacgtacctGaaaccttaaaagaattgtgc	10	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57128685	A	A	57128685	4	1	116	1	0	0	0	0	0	1	0	0	16635	1299	45	4	1742	4	TRIM37	17	57128685	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	507491	57128685	24066525	1743	110739											
PRR11	55771	broad.mit.edu	37	chr17	57257128	57257128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtctcctcaggctcaggGgcgagctccttctctggctc	12	15	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57257128	T	T	57257128	1	4	116	0	1	0	0	0	0	0	0	0	12689	1247	43	2		2	PRR11	17	57257128	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	128443	57257128	23938082	1744	110740											
PRR11	55771	broad.mit.edu	37	chr17	57279141	57279141	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagtttgagaccagcctGgccaacatggtgaaactcct	11	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57279141	T	T	57279141	1	4	116	0	1	0	0	0	0	0	0	0	12689	1363	47	2		2	PRR11	17	57279141	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	22013	57279141	23916069	1745	110741											
GDPD1	284161	broad.mit.edu	37	chr17	57311945	57311945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcttttacagtttgcaGgctttctttaaagtgatgat	7	6	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57311945	T	T	57311945	1	4	116	0	1	0	0	0	0	0	0	0	6387	1015	35	2		2	GDPD1	17	57311945	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	32804	57311945	23883265	1746	110742											
TBX2	6909	broad.mit.edu	37	chr17	59485396	59485396	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaagatgtctaaccctcgtCttgttctgtttcttccaggg	9	11	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59485396	A	A	59485396	1	1	116	0	1	0	0	0	0	0	0	0	15777	928	32	3		3	TBX2	17	59485396	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2173451	59485396	21709814	1747	110743											
CYB561	1534	broad.mit.edu	37	chr17	61511984	61511984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagaggaagggagaagctGcccaaggggtcacaattagg	17	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61511984	A	A	61511984	1	1	116	0	1	0	0	0	0	0	0	0	4152	1334	46	4		4	CYB561	17	61511984	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2026588	61511984	19683226	1748	110744											
LIMD2	80774	broad.mit.edu	37	chr17	61776059	61776059	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccccgtgcagcgcggcGtagctgcccaggctgcagaa	13	15	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61776059	T	T	61776059	4	4	116	1	0	0	0	0	0	1	0	0	8871	1140	40	3	150	3	LIMD2	17	61776059	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	264075	61776059	19419151	1749	110745											
CCDC46	201134	broad.mit.edu	37	chr17	63848085	63848085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctaccagctgctgtttcCgctgtgagttcacattgatc	9	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63848085	A	A	63848085	3	1	116	1	0	0	0	0	1	0	0	0	2845	652	23	1	830	1	CCDC46	17	63848085	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2072026	63848085	17347125	1750	110746											
CACNG5	27091	broad.mit.edu	37	chr17	64873633	64873633	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactcaggcctctggcgggtCtgcttccttgcaggtaaggg	14	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64873633	A	A	64873633	2	1	116	1	0	0	0	0	0	0	0	1	2586	900	32	3		3	CACNG5	17	64873633	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1025548	64873633	16321577	1751	110747											
CACNG1	786	broad.mit.edu	37	chr17	65040956	65040956	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggatttgtaccaagcgCatccccatggacgacagcaa	11	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65040956	A	A	65040956	2	1	116	1	0	0	0	0	0	0	0	1	2582	697	25	3		3	CACNG1	17	65040956	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	167323	65040956	16154254	1752	110748											
HELZ	9931	broad.mit.edu	37	chr17	65146102	65146102	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaatgtgtgtaaaaaaccCtagaaaatgcagcataaaca	7	6	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65146102	A	A	65146102	5	1	116	1	0	0	0	0	0	0	1	0	7116	695	24	2	3532	2	HELZ	17	65146102	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	105146	65146102	16049108	1753	110749											
ABCA9	10350	broad.mit.edu	37	chr17	67028185	67028185	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatctttgctcctagtgtgtCacctgacagatccccagtct	8	13	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67028185	A	A	67028185	1	1	116	0	1	0	0	0	0	0	0	0	39	841	29	3		3	ABCA9	17	67028185	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1882083	67028185	14167025	1754	110750											
ABCA10	10349	broad.mit.edu	37	chr17	67181702	67181702	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atacatactgggtgaaaactCccaacaatgagtttcacgag	8	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67181702	A	A	67181702	4	1	116	1	0	0	0	0	0	1	0	0	29	864	30	3	2298	3	ABCA10	17	67181702	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	153517	67181702	14013508	1755	110751											
DNAI2	64446	broad.mit.edu	37	chr17	72297056	72297056	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagtgtatttgctcccacGaattgccgggagctccatcc	9	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72297056	T	T	72297056	1	4	116	0	1	0	0	0	0	0	0	0	4650	1073	37	3		3	DNAI2	17	72297056	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	5115354	72297056	8898154	1756	110752											
GPRC5C	55890	broad.mit.edu	37	chr17	72429969	72429969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtatccttggccctggtGggtggagggggtctcaggct	19	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72429969	T	T	72429969	1	4	116	0	1	0	0	0	0	0	0	0	6792	1363	47	2		2	GPRC5C	17	72429969	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	132913	72429969	8765241	1757	110753											
CD300LB	124599	broad.mit.edu	37	chr17	72527721	72527721	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcgccacagggcttaagCatcgtcactatgtaaaaaag	10	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72527721	A	A	72527721	1	1	116	0	1	0	0	0	0	0	0	0	3029	725	25	3		3	CD300LB	17	72527721	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	97752	72527721	8667489	1758	110754											
CD300C	10871	broad.mit.edu	37	chr17	72541045	72541045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactcagggatccccccaCggggcccgccacggtcatgg	12	18	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72541045	A	A	72541045	3	1	116	1	0	0	0	0	1	0	0	0	3027	536	19	3	583	3	CD300C	17	72541045	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	13324	72541045	8654165	1759	110755											
FDXR	2232	broad.mit.edu	37	chr17	72862393	72862393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatggcaggcccgagacCcacagccttcagcaccagca	10	15	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72862393	A	A	72862393	1	1	116	0	1	0	0	0	0	0	0	0	5864	638	22	2		2	FDXR	17	72862393	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	321348	72862393	8332817	1760	110756											
OTOP2	92736	broad.mit.edu	37	chr17	72921499	72921499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctatccacctgtcctccCaccctccccattgatccatc	2	22	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72921499	A	A	72921499	1	1	116	0	1	0	0	0	0	0	0	0	11400	609	21	2		2	OTOP2	17	72921499	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	59106	72921499	8273711	1761	110757											
NUP85	79902	broad.mit.edu	37	chr17	73227579	73227579	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggcccccgagggtggtgtGaactgaatgcctgaaaggga	16	9	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73227579	T	T	73227579	1	4	116	0	1	0	0	0	0	0	0	0	10865	1305	45	3		3	NUP85	17	73227579	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	306080	73227579	7967631	1762	110758											
RECQL5	9400	broad.mit.edu	37	chr17	73657142	73657142	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcgttctttcagaggccttCagccctgtaaaggaggggaa	13	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73657142	T	T	73657142	2	4	116	1	0	0	0	0	0	0	0	1	13311	813	29	4		4	RECQL5	17	73657142	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	429563	73657142	7538068	1763	110759											
EVPL	2125	broad.mit.edu	37	chr17	74014575	74014575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgctgggatgcagaagCaggcggcgggagcacgcttg	19	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74014575	A	A	74014575	3	1	116	1	0	0	0	0	1	0	0	0	5334	710	25	3	4754	3	EVPL	17	74014575	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	357433	74014575	7180635	1764	110760											
UBE2O	63893	broad.mit.edu	37	chr17	74398726	74398726	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgatctggttcttcaagtCgtagaccttccccagccagc	9	13	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74398726	T	T	74398726	3	4	116	1	0	0	0	0	1	0	0	0	16994	884	31	4	3295	4	UBE2O	17	74398726	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	384151	74398726	6796484	1765	110761											
PRCD	768206	broad.mit.edu	37	chr17	74538531	74538531	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtggtcctgcccctcaaTattggggtgaattgataggg	14	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74538531	C	C	74538531	1	2	116	0	1	0	0	0	0	0	0	0	12554	1421	49	5		5	PRCD	17	74538531	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	139805	74538531	6656679	1766	110762											
ST6GALNAC2	10610	broad.mit.edu	37	chr17	74563515	74563515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctgccggcatgggcttcTggaagagaaggcctcttacc	13	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74563515	C	C	74563515	1	2	116	0	1	0	0	0	0	0	0	0	15342	1595	55	5		5	ST6GALNAC2	17	74563515	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	24984	74563515	6631695	1767	110763											
MFSD11	79157	broad.mit.edu	37	chr17	74738050	74738050	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgacctgttatattttaGcatgtacattgccgttttca	6	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74738050	T	T	74738050	5	4	116	1	0	0	0	0	0	0	1	0	9622	985	34	3	274	3	MFSD11	17	74738050	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	174535	74738050	6457160	1768	110764											
MGAT5B	146664	broad.mit.edu	37	chr17	74944851	74944851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgccggctccaacaccaaGtaccgccggctctgcccctg	10	19	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74944851	T	T	74944851	3	4	116	1	0	0	0	0	1	0	0	0	9642	1020	36	3	2471	3	MGAT5B	17	74944851	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	206801	74944851	6250359	1769	110765											
TMC6	11322	broad.mit.edu	37	chr17	76113296	76113296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtggaggggagcgtcacCctcaggtgacctgagagggt	19	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76113296	T	T	76113296	1	4	116	0	1	0	0	0	0	0	0	0	16112	638	22	4		4	TMC6	17	76113296	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1168445	76113296	5081914	1770	110766											
TIMP2	7077	broad.mit.edu	37	chr17	76853736	76853736	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctcggcctttcctgcggaGagacggggatcaccgagctc	13	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76853736	A	A	76853736	1	1	116	0	1	0	0	0	0	0	0	0	16041	957	33	4		4	TIMP2	17	76853736	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	740440	76853736	4341474	1771	110767											
CANT1	124583	broad.mit.edu	37	chr17	76993512	76993512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggggcctgccgggggCcgggcggtgggagcagagca	25	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76993512	A	A	76993512	3	1	116	1	0	0	0	0	1	0	0	0	2643	739	26	3	1024	3	CANT1	17	76993512	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	139776	76993512	4201698	1772	110768											
ENGASE	64772	broad.mit.edu	37	chr17	77081425	77081425	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggggctgggtccagcaGtaagtccctctgcttcttca	13	11	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77081425	A	A	77081425	5	1	116	1	0	0	0	0	0	0	1	0	5160	1043	36	4	1747	4	ENGASE	17	77081425	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	87913	77081425	4113785	1773	110769											
FASN	2194	broad.mit.edu	37	chr17	80045115	80045115	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccctcagccacctgctcaCcaccacgtcagccactgtgg	8	19	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80045115	A	A	80045115	3	1	116	1	0	0	0	0	1	0	0	0	5740	507	18	3	4389	3	FASN	17	80045115	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2963690	80045115	1150095	1774	110770											
CCDC57	284001	broad.mit.edu	37	chr17	80129781	80129781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacacagcatcctttcgcaCctccctcctgtgagcaccag	6	17	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80129781	T	T	80129781	1	4	116	0	1	0	0	0	0	0	0	0	2855	522	18	4		4	CCDC57	17	80129781	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	84666	80129781	1065429	1775	110771											
MYL12B	103910	broad.mit.edu	37	chr18	3273177	3273177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaaatatttctctccttGtctcaaaaggcctctggaga	7	10	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3273177	T	T	3273177	1	4	116	0	1	0	0	0	0	0	0	0	10140	1392	48	3		3	MYL12B	18	3273177	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08		3273177	74804071	1776	110772											
PPP4R1	9989	broad.mit.edu	37	chr18	9570087	9570087	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaattttttctgaaatgaaAtttttttaagatagacacta	4	4	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9570087	T	T	9570087	1	4	116	0	1	0	0	0	0	0	0	0	12504	116	4	5		5	PPP4R1	18	9570087	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	6296910	9570087	68507161	1777	110773											
TXNDC2	84203	broad.mit.edu	37	chr18	9887023	9887024	+	Missense_Mutation	DNP	CC	AA	AA													agggtgacatccccaaggccCcagaagaaaccatccaatcc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	9887024	AA	AA	9887023	3	1	116	1	0	0	0	0	1	0	0	0	16923	623	22	2	553	2	TXNDC2	18	9887023	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	316936	9887023	68190225	1778	110774											
FAM38B	63895	broad.mit.edu	37	chr18	10671787	10671787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccataatactgaaaaaaaCagtaagtagaaattgcatac	5	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10671787	A	A	10671787	1	1	116	0	1	0	0	0	0	0	0	0	5606	493	17	3		3	FAM38B	18	10671787	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	784764	10671787	67405461	1779	110775											
ANKRD30B	374860	broad.mit.edu	37	chr18	14757826	14757826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttagcacagccctcatGcttgccatatgtgaaggctc	8	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14757826	T	T	14757826	3	4	116	1	0	0	0	0	1	0	0	0	659	1319	46	3	648	3	ANKRD30B	18	14757826	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4086039	14757826	63319422	1780	110776											
ROCK1	6093	broad.mit.edu	37	chr18	18690946	18690946	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaccaacttcctccgcggTgggttcgcagccgcggggcg	14	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18690946	A	A	18690946	1	1	116	0	1	0	0	0	0	0	0	0	13628	1711	59	5		5	ROCK1	18	18690946	5'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	3933120	18690946	59386302	1781	110777											
ABHD3	171586	broad.mit.edu	37	chr18	19231745	19231745	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcagaccaaaaaaaacatGgcaataagagagaagaagga	9	6	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19231745	A	A	19231745	1	1	116	0	1	0	0	0	0	0	0	0	83	1363	47	4		4	ABHD3	18	19231745	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	540799	19231745	58845503	1782	110778											
ZNF521	25925	broad.mit.edu	37	chr18	22804827	22804827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaccacgcagcgaaagcCtgtcagggaattcctcaagt	10	13	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804827	A	A	22804827	3	1	116	1	0	0	0	0	1	0	0	0	18092	681	24	2	900	2	ZNF521	18	22804827	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3573082	22804827	55272421	1783	110779											
ZNF521	25925	broad.mit.edu	37	chr18	22805773	22805773	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaggtcatccactgatgtGaattgcttgtcacaactctc	8	10	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805773	A	A	22805773	2	1	116	1	0	0	0	0	0	0	0	1	18092	1281	45	4		4	ZNF521	18	22805773	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	946	22805773	55271475	1784	110780											
ZNF521	25925	broad.mit.edu	37	chr18	22805845	22805845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatggtaacatgcttcagCaaggattcttggttggggaa	13	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805845	A	A	22805845	3	1	116	1	0	0	0	0	1	0	0	0	18092	709	25	3	1918	3	ZNF521	18	22805845	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	72	22805845	55271403	1785	110781											
DSC3	1825	broad.mit.edu	37	chr18	28610993	28610993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgtctgtttccttttGtcagaaagccatatggtaaa	8	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28610993	T	T	28610993	3	4	116	1	0	0	0	0	1	0	0	0	4807	1368	48	3	2477	3	DSC3	18	28610993	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	5805148	28610993	49466255	1786	110782											
DSG1	1828	broad.mit.edu	37	chr18	28934808	28934808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatggaatgttagagatGcctgacttgcgagatgggtc	14	6	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28934808	T	T	28934808	3	4	116	1	0	0	0	0	1	0	0	0	4816	1319	46	3	2707	3	DSG1	18	28934808	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	323815	28934808	49142440	1787	110783											
B4GALT6	9331	broad.mit.edu	37	chr18	29205774	29205774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaaaacatgttcaaaaaGgaaaactgataaggactgtg	8	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29205774	T	T	29205774	1	4	116	0	1	0	0	0	0	0	0	0	1280	1015	35	2		2	B4GALT6	18	29205774	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	270966	29205774	48871474	1788	110784											
KLHL14	57565	broad.mit.edu	37	chr18	30254777	30254777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgtaatgacagaggaGggagcatttagagaaggaag	14	7	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30254777	T	T	30254777	1	4	116	0	1	0	0	0	0	0	0	0	8441	1015	35	2		2	KLHL14	18	30254777	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1049003	30254777	47822471	1789	110785											
GALNT1	2589	broad.mit.edu	37	chr18	33283564	33283564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagttacaatgctcaaatGccaccacctaaaaggcaacc	5	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33283564	T	T	33283564	3	4	116	1	0	0	0	0	1	0	0	0	6269	1319	46	3	1528	3	GALNT1	18	33283564	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3028787	33283564	44793684	1790	110786											
FHOD3	80206	broad.mit.edu	37	chr18	34205545	34205545	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgccgggaccggaggagGgccagcgtgtgttccagtgg	21	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34205545	T	T	34205545	3	4	116	1	0	0	0	0	1	0	0	0	5940	1223	43	2	1067	2	FHOD3	18	34205545	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	921981	34205545	43871703	1791	110787											
SETBP1	26040	broad.mit.edu	37	chr18	42531802	42531802	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggaagctgtctccacccAgactgatggccaactcccct	8	17	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42531802	T	T	42531802	4	4	116	1	0	0	0	0	0	1	0	0	14242	180	7	5	2700	5	SETBP1	18	42531802	Nonsense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	8326257	42531802	35545446	1792	110788											
KIAA1632	57724	broad.mit.edu	37	chr18	43497819	43497819	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcactgaatacacaagGgagctggttcataaaattct	9	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43497819	A	A	43497819	1	1	116	0	1	0	0	0	0	0	0	0	8319	1247	43	4		4	KIAA1632	18	43497819	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	966017	43497819	34579429	1793	110789											
ATP5A1	498	broad.mit.edu	37	chr18	43664302	43664302	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctctttcagctttgcatcTgattgttctgagatctttcc	6	10	5	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43664302	C	C	43664302	2	2	116	1	0	0	0	0	0	0	0	1	1151	1567	55	5		5	ATP5A1	18	43664302	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	166483	43664302	34412946	1794	110790											
TCEB3C	162699	broad.mit.edu	37	chr18	44554581	44554581	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtcctgagtttatcgtcGggagaatcttcccttgtagt	10	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44554581	A	A	44554581	4	1	116	1	0	0	0	0	0	1	0	0	15805	1124	39	4	1654	4	TCEB3C	18	44554581	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	890279	44554581	33522667	1795	110791											
TCEB3B	51224	broad.mit.edu	37	chr18	44561593	44561593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagtggccagacgcacctGcagcttctccactgcgtgca	10	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44561593	T	T	44561593	3	4	116	1	0	0	0	0	1	0	0	0	15804	1328	46	3	2222	3	TCEB3B	18	44561593	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	7012	44561593	33515655	1796	110792											
DYM	54808	broad.mit.edu	37	chr18	46783427	46783427	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagagaacgaaactgtgcCgacatatttgctaaagctgc	11	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46783427	T	T	46783427	2	4	116	1	0	0	0	0	0	0	0	1	4880	639	23	4		4	DYM	18	46783427	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	2221834	46783427	31293821	1797	110793											
DCC	1630	broad.mit.edu	37	chr18	50848396	50848396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagtaactttcttcccccCtgtggaaaattctttcatag	5	11	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50848396	A	A	50848396	1	1	116	0	1	0	0	0	0	0	0	0	4315	696	24	2		2	DCC	18	50848396	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4064969	50848396	27228852	1798	110794											
TCF4	6925	broad.mit.edu	37	chr18	52942961	52942961	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcccactggaggagctccaAgggtcactgctgtgatggcc	13	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52942961	T	T	52942961	2	4	116	1	0	0	0	0	0	0	0	1	15817	59	3	5		5	TCF4	18	52942961	Silent	SNP	A	TCGA-44-3918-01A-01D-1105-08	2094565	52942961	25134287	1799	110795											
ST8SIA3	51046	broad.mit.edu	37	chr18	55020225	55020225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacgccagcccgggggcgCcccgaatgtacatgttccac	12	15	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55020225	A	A	55020225	3	1	116	1	0	0	0	0	1	0	0	0	15351	739	26	3	150	3	ST8SIA3	18	55020225	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2077264	55020225	23057023	1800	110796											
ATP8B1	5205	broad.mit.edu	37	chr18	55365077	55365077	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacgtctccaacttgaatttCtttccacttagcaactttga	5	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55365077	T	T	55365077	3	4	116	1	0	0	0	0	1	0	0	0	1198	922	32	4	3266	4	ATP8B1	18	55365077	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	344852	55365077	22712171	1801	110797											
ALPK2	115701	broad.mit.edu	37	chr18	56184357	56184357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcggcccccaaagtagCtgtcatggaggaagtcttct	13	11	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56184357	A	A	56184357	3	1	116	1	0	0	0	0	1	0	0	0	545	797	28	3	809	3	ALPK2	18	56184357	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	819280	56184357	21892891	1802	110798											
ALPK2	115701	broad.mit.edu	37	chr18	56246001	56246001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacggttctttttatctcgta	3	15	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56246001	A	A	56246001	1	1	116	0	1	0	0	0	0	0	0	0	545	493	17	3		3	ALPK2	18	56246001	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	61644	56246001	21831247	1803	110799											
ZNF532	55205	broad.mit.edu	37	chr18	56586482	56586482	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgaatcccagaatctcatCgacgggaccaaaaaaccatc	6	14	1	2	rs149812809		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56586482	T	T	56586482	2	4	116	1	0	0	0	0	0	0	0	1	18099	874	31	4		4	ZNF532	18	56586482	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	340481	56586482	21490766	1804	110800											
RAX	30062	broad.mit.edu	37	chr18	56940074	56940074	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccttaataaaagttaaggAaggggcgctctcgtctggcc	12	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56940074	T	T	56940074	1	4	116	0	1	0	0	0	0	0	0	0	13204	261	9	5		5	RAX	18	56940074	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	353592	56940074	21137174	1805	110801											
CDH20	28316	broad.mit.edu	37	chr18	59157724	59157724	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtatttttttaaatttGgaaaatactcaagttccagt	6	5	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59157724	T	T	59157724	1	4	116	0	1	0	0	0	0	0	0	0	3136	1363	47	2		2	CDH20	18	59157724	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	2217650	59157724	18919524	1806	110802											
SERPINB12	89777	broad.mit.edu	37	chr18	61226923	61226923	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtattgccaacaggctttAtggagagcaggaattcccaa	11	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61226923	T	T	61226923	3	4	116	1	0	0	0	0	1	0	0	0	14212	449	16	5	366	5	SERPINB12	18	61226923	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	2069199	61226923	16850325	1807	110803											
SERPINB4	6318	broad.mit.edu	37	chr18	61328208	61328208	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctacccatcagaccaccacAtctattaccatctgcgtgct	5	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61328208	T	T	61328208	1	4	116	0	1	0	0	0	0	0	0	0	14216	232	8	5		5	SERPINB4	18	61328208	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	101285	61328208	16749040	1808	110804											
DOK6	220164	broad.mit.edu	37	chr18	67344967	67344967	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgatgttgtggttactttCagagctggaggccgaggagt	17	5	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67344967	T	T	67344967	1	4	116	0	1	0	0	0	0	0	0	0	4741	841	29	4		4	DOK6	18	67344967	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	6016759	67344967	10732281	1809	110805											
NETO1	81832	broad.mit.edu	37	chr18	70451059	70451059	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcaaatcctccacggaaCtgcttccatcatacacagcc	4	16	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70451059	A	A	70451059	3	1	116	1	0	0	0	0	1	0	0	0	10434	565	20	3	895	3	NETO1	18	70451059	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3106092	70451059	7626189	1810	110806											
ZNF236	7776	broad.mit.edu	37	chr18	74606827	74606827	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagattaactcctagccctcGataatgtcagtgatcctggg	10	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74606827	A	A	74606827	1	1	116	0	1	0	0	0	0	0	0	0	17915	1073	37	4		4	ZNF236	18	74606827	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4155768	74606827	3470421	1811	110807											
AZU1	566	broad.mit.edu	37	chr19	829516	829516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcttgctctgtgcccaggCcccagcctggtgtcctccct	11	18	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	829516	A	A	829516	1	1	116	0	1	0	0	0	0	0	0	0	1248	754	26	3		3	AZU1	19	829516	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08		829516	58299467	1812	110808											
ARID3A	1820	broad.mit.edu	37	chr19	964827	964827	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctcttccctcgtcccacCcacagatacatgaagtacct	4	17	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	964827	T	T	964827	1	4	116	0	1	0	0	0	0	0	0	0	918	638	22	4		4	ARID3A	19	964827	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	135311	964827	58164156	1813	110809											
ABCA7	10347	broad.mit.edu	37	chr19	1061838	1061838	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtccacgtttcgcatggtgAcgggggacacattggccagc	14	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1061838	T	T	1061838	3	4	116	1	0	0	0	0	1	0	0	0	37	275	10	5	5679	5	ABCA7	19	1061838	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	97011	1061838	58067145	1814	110810											
ATP8B3	148229	broad.mit.edu	37	chr19	1796077	1796077	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggtggcggggctcaccCagcaccgacatccgtttgcg	14	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1796077	T	T	1796077	2	4	116	1	0	0	0	0	0	0	0	1	1200	608	21	4		4	ATP8B3	19	1796077	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	734239	1796077	57332906	1815	110811											
CELF5	60680	broad.mit.edu	37	chr19	3293293	3293293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacccgcagcgccaaccacGgaggtccaccctggtttctg	10	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3293293	T	T	3293293	1	4	116	0	1	0	0	0	0	0	0	0	3249	1131	39	1		1	CELF5	19	3293293	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1497216	3293293	55835690	1816	110812											
PIP5K1C	23396	broad.mit.edu	37	chr19	3660868	3660868	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccctacacgaggaacccaGggaggctgcccccaaatgcc	10	16	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3660868	A	A	3660868	1	1	116	0	1	0	0	0	0	0	0	0	12036	1015	35	4		4	PIP5K1C	19	3660868	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	367575	3660868	55468115	1817	110813											
EBI3	10148	broad.mit.edu	37	chr19	4234872	4234872	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgcctggcagagggaaTggtttttaccaagactagca	14	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4234872	C	C	4234872	1	2	116	0	1	0	0	0	0	0	0	0	4923	1479	51	5		5	EBI3	19	4234872	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	574004	4234872	54894111	1818	110814											
CHAF1A	10036	broad.mit.edu	37	chr19	4409849	4409849	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacccaggtgttttgtggcaGagtgagcggggccacgggct	17	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4409849	C	C	4409849	1	2	116	0	1	0	0	0	0	0	0	0	3342	957	33	4		4	CHAF1A	19	4409849	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	174977	4409849	54719134	1819	110815											
CHAF1A	10036	broad.mit.edu	37	chr19	4429352	4429352	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttctagaattgttaggcCagcttcacagggaggttcct	10	9	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4429352	T	T	4429352	1	4	116	0	1	0	0	0	0	0	0	0	3342	609	21	4		4	CHAF1A	19	4429352	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	19503	4429352	54699631	1820	110816											
TNFSF9	8744	broad.mit.edu	37	chr19	6530970	6530970	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggaggggcgtggccgcgGgcggaggggcgtggcctcct	24	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6530970	T	T	6530970	1	4	116	0	1	0	0	0	0	0	0	0	16435	1247	43	2		2	TNFSF9	19	6530970	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	2101618	6530970	52598013	1821	110817											
PNPLA6	10908	broad.mit.edu	37	chr19	7605228	7605228	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaggggctgctgcaggagGatgggtggtggggatgggca	22	7	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7605228	T	T	7605228	1	4	116	0	1	0	0	0	0	0	0	0	12264	1189	41	3		3	PNPLA6	19	7605228	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1074258	7605228	51523755	1822	110818											
FBN3	84467	broad.mit.edu	37	chr19	8176862	8176862	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcccccaggtactcaccGtgacattcgaagccatcccc	7	19	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8176862	A	A	8176862	2	1	116	1	0	0	0	0	0	0	0	1	5761	1159	40	4		4	FBN3	19	8176862	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	571634	8176862	50952121	1823	110819											
HNRNPM	4670	broad.mit.edu	37	chr19	8520518	8520518	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcatcttttctgtggctAattccttggttatttttggt	9	6	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8520518	T	T	8520518	1	4	116	0	1	0	0	0	0	0	0	0	7338	377	13	5		5	HNRNPM	19	8520518	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	343656	8520518	50608465	1824	110820											
ADAMTS10	81794	broad.mit.edu	37	chr19	8654284	8654284	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgagtgaggcgaccccctAacccacccccgctccccatc	8	21	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8654284	T	T	8654284	1	4	116	0	1	0	0	0	0	0	0	0	256	377	13	5		5	ADAMTS10	19	8654284	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	133766	8654284	50474699	1825	110821											
OR2Z1	284383	broad.mit.edu	37	chr19	8842204	8842204	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accacagtccacagcaggatAacgtggtttccctcttctat	7	13	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8842204	T	T	8842204	3	4	116	1	0	0	0	0	1	0	0	0	11130	362	13	5	816	5	OR2Z1	19	8842204	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	187920	8842204	50286779	1826	110822											
ZNF558	148156	broad.mit.edu	37	chr19	8922189	8922190	+	Missense_Mutation	DNP	CC	AA	AA													agctactgctgaaggatttcCcacactcgttacattcatag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	8922190	AA	AA	8922189	3	1	116	1	0	0	0	0	1	0	0	0	18116	623	22	2	235	2	ZNF558	19	8922189	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	79985	8922189	50206794	1827	110823											
MUC16	94025	broad.mit.edu	37	chr19	9011134	9011134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctatcggcatcctcacaaCagagaagaatgccctgaggg	10	12	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9011134	A	A	9011134	1	1	116	0	1	0	0	0	0	0	0	0	10067	493	17	3		3	MUC16	19	9011134	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	88945	9011134	50117849	1828	110824											
MUC16	94025	broad.mit.edu	37	chr19	9049809	9049809	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttgtcttggaaacagttgGgatggtctctgcaggatgga	16	5	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9049809	A	A	9049809	3	1	116	1	0	0	0	0	1	0	0	0	10067	1232	43	4	12021	4	MUC16	19	9049809	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	38675	9049809	50079174	1829	110825											
MUC16	94025	broad.mit.edu	37	chr19	9056073	9056073	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgctaagagaatttctGgtacaggaataaactagtta	9	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9056073	T	T	9056073	1	4	116	0	1	0	0	0	0	0	0	0	10067	1363	47	2		2	MUC16	19	9056073	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6264	9056073	50072910	1830	110826											
MUC16	94025	broad.mit.edu	37	chr19	9061051	9061051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaaggtaaaggtaccttGtgaggatgccccagaatgac	12	9	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9061051	T	T	9061051	3	4	116	1	0	0	0	0	1	0	0	0	10067	1386	48	3	17456	3	MUC16	19	9061051	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4978	9061051	50067932	1831	110827											
MUC16	94025	broad.mit.edu	37	chr19	9064316	9064316	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggaaggggagaggggggGatatgtgctaggaatgtggt	21	2	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9064316	T	T	9064316	2	4	116	1	0	0	0	0	0	0	0	1	10067	1164	41	3		3	MUC16	19	9064316	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	3265	9064316	50064667	1832	110828											
MUC16	94025	broad.mit.edu	37	chr19	9064968	9064968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgagtcaggtaggacagagGaaggggattcatgtccagaa	15	6	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9064968	T	T	9064968	3	4	116	1	0	0	0	0	1	0	0	0	10067	1174	41	3	21373	3	MUC16	19	9064968	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	652	9064968	50064015	1833	110829											
MUC16	94025	broad.mit.edu	37	chr19	9071983	9071983	+	Frame_Shift_Del	DEL	C	-	-													tcccacagtggtggtgataaCcatttgagttgtggctttgg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9071983	-	-	9071983	7	5	116	1	0	1	0	1	0	0	0	0	10067	507	18	0	28388	0	MUC16	19	9071983	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	7015	9071983	50057000	1834	110830											
MUC16	94025	broad.mit.edu	37	chr19	9084426	9084426	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaccaggctaatagggcCgagcttgtctcgacagggtg	14	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9084426	A	A	9084426	2	1	116	1	0	0	0	0	0	0	0	1	10067	639	23	1		1	MUC16	19	9084426	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	12443	9084426	50044557	1835	110831											
ZNF699	374879	broad.mit.edu	37	chr19	9407298	9407298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctaaagaatgaggaacagCtgaaggctttggtacattcc	10	9	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9407298	A	A	9407298	3	1	116	1	0	0	0	0	1	0	0	0	18228	797	28	3	1150	3	ZNF699	19	9407298	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	322872	9407298	49721685	1836	110832											
ZNF559	84527	broad.mit.edu	37	chr19	9449202	9449202	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagatgttttctgtcttcatGagtcaaaatttgaagaggaa	9	4	4	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9449202	T	T	9449202	1	4	116	0	1	0	0	0	0	0	0	0	18117	1305	45	3		3	ZNF559	19	9449202	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	41904	9449202	49679781	1837	110833											
ZNF560	147741	broad.mit.edu	37	chr19	9578134	9578134	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagatgagaaagaaacaaAgactttcccacactggtcac	8	9	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9578134	T	T	9578134	3	4	116	1	0	0	0	0	1	0	0	0	18118	72	3	5	887	5	ZNF560	19	9578134	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	128932	9578134	49550849	1838	110834											
COL5A3	50509	broad.mit.edu	37	chr19	10108083	10108083	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggaatcctggggggccGggagggcctgaggggccaac	20	11	0	1	rs150339396		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10108083	T	T	10108083	2	4	116	1	0	0	0	0	0	0	0	1	3730	1103	39	1		1	COL5A3	19	10108083	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	529949	10108083	49020900	1839	110835											
RAVER1	125950	broad.mit.edu	37	chr19	10429882	10429882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcccaagggctggttccCgtgggtgggagaagagccgc	19	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10429882	A	A	10429882	3	1	116	1	0	0	0	0	1	0	0	0	13202	652	23	1	430	1	RAVER1	19	10429882	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	321799	10429882	48699101	1840	110836											
ICAM3	3385	broad.mit.edu	37	chr19	10445566	10445566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatccgggccacgctttcGgccgttcaagcctcgccctc	10	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10445566	T	T	10445566	1	4	116	0	1	0	0	0	0	0	0	0	7551	1131	39	1		1	ICAM3	19	10445566	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	15684	10445566	48683417	1841	110837											
ICAM3	3385	broad.mit.edu	37	chr19	10449401	10449401	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgttatctgagagccattGcagtacactgagcagaggat	11	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10449401	A	A	10449401	2	1	116	1	0	0	0	0	0	0	0	1	7551	1311	46	4		4	ICAM3	19	10449401	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	3835	10449401	48679582	1842	110838											
LDLR	3949	broad.mit.edu	37	chr19	11210879	11210879	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggcgttgagagaccctttCtccttttcctctctctcagt	7	14	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11210879	G	G	11210879	1	3	116	0	1	0	0	0	0	0	0	0	8776	928	32	4		4	LDLR	19	11210879	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	761478	11210879	47918104	1843	110839											
TSPAN16	26526	broad.mit.edu	37	chr19	11408976	11408976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttggctgtgccgggtgGtatggagcgactaaagagag	17	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11408976	T	T	11408976	3	4	116	1	0	0	0	0	1	0	0	0	16765	1270	44	3	234	3	TSPAN16	19	11408976	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	198097	11408976	47720007	1844	110840											
ZNF700	90592	broad.mit.edu	37	chr19	12060377	12060377	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttataaatgtagtatatGtgagaaaggcttttattctg	8	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12060377	A	A	12060377	3	1	116	1	0	0	0	0	1	0	0	0	18231	1377	48	4	1552	4	ZNF700	19	12060377	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	651401	12060377	47068606	1845	110841											
ZNF442	79973	broad.mit.edu	37	chr19	12460729	12460729	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcatgtcgcagaaggcaaGtgagccaagagaatgctttc	11	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12460729	C	C	12460729	3	2	116	1	0	0	0	0	1	0	0	0	18042	1029	36	4	217	4	ZNF442	19	12460729	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	400352	12460729	46668254	1846	110842											
MAN2B1	4125	broad.mit.edu	37	chr19	12774458	12774458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacagagcagatatcaagcCcagggcccttctgagtgtgt	11	11	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12774458	A	A	12774458	1	1	116	0	1	0	0	0	0	0	0	0	9308	638	22	2		2	MAN2B1	19	12774458	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	313729	12774458	46354525	1847	110843											
HOOK2	29911	broad.mit.edu	37	chr19	12874440	12874440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggcaagtgtcaggggcCtagatacgttggaggcagcg	18	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12874440	A	A	12874440	1	1	116	0	1	0	0	0	0	0	0	0	7350	696	24	2		2	HOOK2	19	12874440	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	99982	12874440	46254543	1848	110844											
RTBDN	83546	broad.mit.edu	37	chr19	12939733	12939733	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtttccagggcccgatgtCtctgttgtgtccatctctga	11	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12939733	A	A	12939733	3	1	116	1	0	0	0	0	1	0	0	0	13828	912	32	3	501	3	RTBDN	19	12939733	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	65293	12939733	46189250	1849	110845											
CACNA1A	773	broad.mit.edu	37	chr19	13363933	13363933	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaactaggggaaagaagcagGagtagcaggggtcagcgagc	18	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13363933	C	C	13363933	1	2	116	0	1	0	0	0	0	0	0	0	2564	1189	41	4		4	CACNA1A	19	13363933	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	424200	13363933	45765050	1850	110846											
RFX1	5989	broad.mit.edu	37	chr19	14073934	14073934	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcccgcctcgcgcacCtcgcccatgacggcgatggg	14	17	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14073934	G	G	14073934	3	3	116	1	0	0	0	0	1	0	0	0	13370	695	24	4	227	4	RFX1	19	14073934	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	710001	14073934	45055049	1851	110847											
IL27RA	9466	broad.mit.edu	37	chr19	14162620	14162620	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagggcgcagtcacattcAtgaaccctgcaccctgggct	10	15	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14162620	T	T	14162620	1	4	116	0	1	0	0	0	0	0	0	0	7751	232	8	5		5	IL27RA	19	14162620	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	88686	14162620	44966363	1852	110848											
GIPC1	10755	broad.mit.edu	37	chr19	14593722	14593722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcccagccctccacggcCtggctcagcctcctcatttt	7	20	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14593722	A	A	14593722	3	1	116	1	0	0	0	0	1	0	0	0	6456	681	24	2	958	2	GIPC1	19	14593722	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	431102	14593722	44535261	1853	110849											
GIPC1	10755	broad.mit.edu	37	chr19	14593830	14593830	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagaagatctgcaggacagGaagtggggctcagggcctgg	17	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14593830	C	C	14593830	1	2	116	0	1	0	0	0	0	0	0	0	6456	1189	41	4		4	GIPC1	19	14593830	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	108	14593830	44535153	1854	110850											
BRD4	23476	broad.mit.edu	37	chr19	15378421	15378421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctccccacctctgtagaCagggcaccccatgccaccca	6	22	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15378421	A	A	15378421	1	1	116	0	1	0	0	0	0	0	0	0	1513	493	17	3		3	BRD4	19	15378421	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	784591	15378421	43750562	1855	110851											
PGLYRP2	114770	broad.mit.edu	37	chr19	15580732	15580732	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacgtagccgtccgagcccAccacgaaactgcagagggga	12	14	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15580732	T	T	15580732	3	4	116	1	0	0	0	0	1	0	0	0	11889	159	6	5	386	5	PGLYRP2	19	15580732	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	202311	15580732	43548251	1856	110852											
CYP4F3	4051	broad.mit.edu	37	chr19	15769110	15769110	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccttcctgaccatgtgCattaaggagagcctgaggct	11	12	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15769110	A	A	15769110	4	1	116	1	0	0	0	0	0	1	0	0	4223	718	25	3	1186	3	CYP4F3	19	15769110	Nonsense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	188378	15769110	43359873	1857	110853											
CYP4F12	66002	broad.mit.edu	37	chr19	15793116	15793116	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggaggctggttgtgggGgagtccatcctgatgtttgg	17	7	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15793116	T	T	15793116	1	4	116	0	1	0	0	0	0	0	0	0	4220	1247	43	2		2	CYP4F12	19	15793116	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	24006	15793116	43335867	1858	110854											
OR10H5	284433	broad.mit.edu	37	chr19	15904977	15904977	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtacctgttcacgctgcTgggcaacctgctcatcatgg	11	12	3	0	rs61741282		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15904977	G	G	15904977	3	3	116	1	0	0	0	0	1	0	0	0	11003	1580	55	5	121	5	OR10H5	19	15904977	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	111861	15904977	43224006	1859	110855											
CYP4F2	8529	broad.mit.edu	37	chr19	15996946	15996946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgcattgagggcctcaGggaggatgggggaaggggga	20	7	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15996946	T	T	15996946	1	4	116	0	1	0	0	0	0	0	0	0	4221	1015	35	2		2	CYP4F2	19	15996946	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	91969	15996946	43132037	1860	110856											
CIB3	117286	broad.mit.edu	37	chr19	16272226	16272226	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaccagagtccacagcGggtgaggggtcaccccgccc	13	15	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16272226	T	T	16272226	1	4	116	0	1	0	0	0	0	0	0	0	3453	1131	39	1		1	CIB3	19	16272226	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	275280	16272226	42856757	1861	110857											
AP1M1	8907	broad.mit.edu	37	chr19	16345295	16345295	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggggctcctggtggcagcaCcaggggacacacctgccaaa	14	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16345295	G	G	16345295	1	3	116	0	1	0	0	0	0	0	0	0	736	522	18	4		4	AP1M1	19	16345295	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	73069	16345295	42783688	1862	110858											
EPS15L1	58513	broad.mit.edu	37	chr19	16503255	16503255	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcccctccaaatggatctaGaaggaaaaatgccccataag	8	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16503255	A	A	16503255	1	1	116	0	1	0	0	0	0	0	0	0	5235	957	33	4		4	EPS15L1	19	16503255	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	157960	16503255	42625728	1863	110859											
NWD1	284434	broad.mit.edu	37	chr19	16910888	16910888	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctggaccgcaccggcctCaccgcagtgtcccacaatgg	10	16	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16910888	G	G	16910888	2	3	116	1	0	0	0	0	0	0	0	1	10876	813	29	4		4	NWD1	19	16910888	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	407633	16910888	42218095	1864	110860											
ANO8	57719	broad.mit.edu	37	chr19	17444344	17444344	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcagcagccatagcagCgtgtggtcatcggtcgtgtc	14	10	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17444344	A	A	17444344	2	1	116	1	0	0	0	0	0	0	0	1	703	755	27	3		3	ANO8	19	17444344	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	533456	17444344	41684639	1865	110861											
PLVAP	83483	broad.mit.edu	37	chr19	17476329	17476329	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcctcctgactggcccgCaggccctgctgggcttccag	12	17	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17476329	A	A	17476329	2	1	116	1	0	0	0	0	0	0	0	1	12211	697	25	3		3	PLVAP	19	17476329	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	31985	17476329	41652654	1866	110862											
SLC27A1	376497	broad.mit.edu	37	chr19	17611545	17611545	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctagtgatggatgagcTgggctacatgtacttccggg	15	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17611545	A	A	17611545	3	1	116	1	0	0	0	0	1	0	0	0	14639	1580	55	5	1534	5	SLC27A1	19	17611545	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	135216	17611545	41517438	1867	110863											
JAK3	3718	broad.mit.edu	37	chr19	17955064	17955064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggccttggcagcctgcaCgcacaggtcctcagccaagt	12	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17955064	A	A	17955064	3	1	116	1	0	0	0	0	1	0	0	0	8009	536	19	3	3303	3	JAK3	19	17955064	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	343519	17955064	41173919	1868	110864											
SLC5A5	6528	broad.mit.edu	37	chr19	18004477	18004477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgacacggaacagggtgGggacagggtctctgatgggg	19	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18004477	T	T	18004477	1	4	116	0	1	0	0	0	0	0	0	0	14782	1247	43	2		2	SLC5A5	19	18004477	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	49413	18004477	41124506	1869	110865											
NCAN	1463	broad.mit.edu	37	chr19	19337642	19337642	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacggaggtggccccaactGaccctatgcctaggagaagg	13	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19337642	T	T	19337642	3	4	116	1	0	0	0	0	1	0	0	0	10299	1290	45	3	1442	3	NCAN	19	19337642	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1333165	19337642	39791341	1870	110866											
TM6SF2	53345	broad.mit.edu	37	chr19	19377337	19377337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaacaccaaggcccagtctgGaagccaggagcaaccaggga	12	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19377337	A	A	19377337	3	1	116	1	0	0	0	0	1	0	0	0	16096	1174	41	4	255	4	TM6SF2	19	19377337	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	39695	19377337	39751646	1871	110867											
SF4	57794	broad.mit.edu	37	chr19	19427244	19427244	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttactcgccaggatgtgGgggctgagggctggccacct	15	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19427244	A	A	19427244	3	1	116	1	0	0	0	0	1	0	0	0	14268	1232	43	4	1796	4	SF4	19	19427244	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	49907	19427244	39701739	1872	110868											
ZNF208	7757	broad.mit.edu	37	chr19	22154800	22154800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttccataaggtttgatgaCcagttgaaagctttgccaca	9	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22154800	A	A	22154800	3	1	116	1	0	0	0	0	1	0	0	0	17892	508	18	3	810	3	ZNF208	19	22154800	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2727556	22154800	36974183	1873	110869											
ZNF676	163223	broad.mit.edu	37	chr19	22379329	22379329	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcattcatcctcctttgttCagtccaataaggtctgcagc	7	13	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22379329	A	A	22379329	1	1	116	0	1	0	0	0	0	0	0	0	18210	841	29	3		3	ZNF676	19	22379329	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	224529	22379329	36749654	1874	110870											
ZNF492	57615	broad.mit.edu	37	chr19	22836001	22836001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaatatatcagtcactcCtataagtaagaaccagttct	4	8	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22836001	A	A	22836001	1	1	116	0	1	0	0	0	0	0	0	0	18070	696	24	2		2	ZNF492	19	22836001	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	456672	22836001	36292982	1875	110871											
ZNF492	57615	broad.mit.edu	37	chr19	22836712	22836712	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagattcatgttatttgtAataaaacaggtattgctgcc	8	6	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22836712	C	C	22836712	1	2	116	0	1	0	0	0	0	0	0	0	18070	377	13	5		5	ZNF492	19	22836712	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	711	22836712	36292271	1876	110872											
ZNF681	148213	broad.mit.edu	37	chr19	23926566	23926566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactggttaaaagctttgcCacatttttcacattggtagg	10	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23926566	A	A	23926566	3	1	116	1	0	0	0	0	1	0	0	0	18215	594	21	2	155	2	ZNF681	19	23926566	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1089854	23926566	35202417	1877	110873											
ZNF536	9745	broad.mit.edu	37	chr19	30934952	30934952	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagcccttcaagtgcccGtactgcgaccacagggcggc	13	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934952	T	T	30934952	2	4	116	1	0	0	0	0	0	0	0	1	18101	1132	40	3		3	ZNF536	19	30934952	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	7008386	30934952	28194031	1878	110874											
ZNF536	9745	broad.mit.edu	37	chr19	31041611	31041611	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgttgttcgtttaagcacaGagaagaattcaggaagctag	11	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31041611	T	T	31041611	1	4	116	0	1	0	0	0	0	0	0	0	18101	957	33	3		3	ZNF536	19	31041611	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	106659	31041611	28087372	1879	110875											
TSHZ3	57616	broad.mit.edu	37	chr19	31767851	31767851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtatttcacgttggccaGccagtggctgatggtggtca	14	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31767851	T	T	31767851	3	4	116	1	0	0	0	0	1	0	0	0	16750	962	34	3	401	3	TSHZ3	19	31767851	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	726240	31767851	27361132	1880	110876											
TSHZ3	57616	broad.mit.edu	37	chr19	31769071	31769071	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggatagcccccccagCtaggagtgccgttctgggcc	14	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31769071	G	G	31769071	3	3	116	1	0	0	0	0	1	0	0	0	16750	797	28	4	1621	4	TSHZ3	19	31769071	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1220	31769071	27359912	1881	110877											
ANKRD27	84079	broad.mit.edu	37	chr19	33093033	33093033	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattccattatttttgaattCtgcaatttgaaagggaaaag	7	4	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33093033	A	A	33093033	5	1	116	1	0	0	0	0	0	0	1	0	655	927	32	3	513	3	ANKRD27	19	33093033	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	1323962	33093033	26035950	1882	110878											
CCDC123	84902	broad.mit.edu	37	chr19	33392156	33392156	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaagacacaaacctattGattttctgtgctcgttcaag	6	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33392156	A	A	33392156	2	1	116	1	0	0	0	0	0	0	0	1	2785	1280	45	4		4	CCDC123	19	33392156	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	299123	33392156	25736827	1883	110879											
RHPN2	85415	broad.mit.edu	37	chr19	33512610	33512610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccggacccctgtgcacccCacggccttgccctcagcagc	9	20	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33512610	A	A	33512610	1	1	116	0	1	0	0	0	0	0	0	0	13460	609	21	2		2	RHPN2	19	33512610	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	120454	33512610	25616373	1884	110880											
WDR88	126248	broad.mit.edu	37	chr19	33655338	33655338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagcatgtccttctatgCgcaaacgcgatgagtttgga	12	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33655338	A	A	33655338	1	1	116	0	1	0	0	0	0	0	0	0	17462	783	27	3		3	WDR88	19	33655338	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	142728	33655338	25473645	1885	110881											
HAUS5	23354	broad.mit.edu	37	chr19	36105968	36105968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggaagttagagctggaaGctgctgtgacccgcctgcgg	16	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36105968	T	T	36105968	3	4	116	1	0	0	0	0	1	0	0	0	7035	971	34	3	262	3	HAUS5	19	36105968	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2450630	36105968	23023015	1886	110882											
MLL4	9757	broad.mit.edu	37	chr19	36220024	36220024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtggggcctgttccctgGcctccccacatcatgccact	10	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36220024	T	T	36220024	1	4	116	0	1	0	0	0	0	0	0	0	9716	1218	42	3		3	MLL4	19	36220024	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	114056	36220024	22908959	1887	110883											
NFKBID	84807	broad.mit.edu	37	chr19	36387226	36387226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcccctggcctcctggcCctggaagccaaaatctgggc	11	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36387226	A	A	36387226	1	1	116	0	1	0	0	0	0	0	0	0	10474	638	22	2		2	NFKBID	19	36387226	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	167202	36387226	22741757	1888	110884											
WDR62	284403	broad.mit.edu	37	chr19	36582440	36582440	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcctgcctgtgtagagAgcatttctaaactgcccagt	9	12	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36582440	T	T	36582440	1	4	116	0	1	0	0	0	0	0	0	0	17440	319	11	5		5	WDR62	19	36582440	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	195214	36582440	22546543	1889	110885											
PLEKHG2	64857	broad.mit.edu	37	chr19	39909336	39909336	+	Intron	DEL	A	-	-													caaggggcatcactgagcccAaggactctgagcttgctacc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39909336	-	-	39909336	6	5	116	0	1	1	0	1	0	0	0	0	12164	145	5	0		0	PLEKHG2	19	39909336	Intron	DEL	A	TCGA-44-3918-01A-01D-1105-08	3326896	39909336	19219647	1890	110886											
CNTD2	79935	broad.mit.edu	37	chr19	40730644	40730644	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctacgtgcacctggaccagCcagtctaccaccagggcgcg	11	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40730644	G	G	40730644	3	3	116	1	0	0	0	0	1	0	0	0	3668	740	26	4	597	4	CNTD2	19	40730644	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	821308	40730644	18398339	1891	110887											
C19orf47	126526	broad.mit.edu	37	chr19	40832377	40832377	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccaggctctcctcctcCcggcgggccagggctgctgg	14	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40832377	A	A	40832377	2	1	116	1	0	0	0	0	0	0	0	1	1949	610	22	2		2	C19orf47	19	40832377	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	101733	40832377	18296606	1892	110888											
CYP2A13	1553	broad.mit.edu	37	chr19	41594903	41594903	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcgtggtgctgtgcggaCatgatgccgtcaaggaggct	18	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41594903	T	T	41594903	3	4	116	1	0	0	0	0	1	0	0	0	4194	478	17	4	256	4	CYP2A13	19	41594903	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	762526	41594903	17534080	1893	110889											
ARHGEF1	9138	broad.mit.edu	37	chr19	42396277	42396277	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggtccccagcctctgccctGagggcagctgctgacccagg	13	17	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42396277	C	C	42396277	1	2	116	0	1	0	0	0	0	0	0	0	895	1305	45	4		4	ARHGEF1	19	42396277	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	801374	42396277	16732706	1894	110890											
MEGF8	1954	broad.mit.edu	37	chr19	42841425	42841434	+	Intron	DEL	CTCAAGCCAC	-	-													ctctccatagtgattctgggCtcaagccacctcagtccgta							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42841434	-	-	42841425	6	5	116	0	1	1	0	1	0	0	0	0	9556	812	28	0		0	MEGF8	19	42841425	Intron	DEL	CTCAAGCCAC	TCGA-44-3918-01A-01D-1105-08	445148	42841425	16287558	1895	110891											
MEGF8	1954	broad.mit.edu	37	chr19	42863308	42863309	+	Missense_Mutation	DNP	GG	TT	TT													ggacaccatggtggttcttgGggggcgctcggaccctgacg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42863309	TT	TT	42863308	3	4	116	1	0	0	0	0	1	0	0	0	9556	1232	43	2	5319	2	MEGF8	19	42863308	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	21883	42863308	16265675	1896	110892											
MEGF8	1954	broad.mit.edu	37	chr19	42880607	42880607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccctgctgctgacagggGccggtgggccctggggaccc	16	16	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42880607	T	T	42880607	3	4	116	1	0	0	0	0	1	0	0	0	9556	1203	42	3	8179	3	MEGF8	19	42880607	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	17299	42880607	16248376	1897	110893											
CEACAM1	634	broad.mit.edu	37	chr19	43015917	43015917	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcttctgagggcctcgttCttcagtctaactacaatccc	6	13	5	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43015917	T	T	43015917	1	4	116	0	1	0	0	0	0	0	0	0	3217	928	32	4		4	CEACAM1	19	43015917	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	135310	43015917	16113066	1898	110894											
PSG6	5675	broad.mit.edu	37	chr19	43439524	43439524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaatgacccctgccccCcaacacccagggaccatgtg	9	16	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43439524	T	T	43439524	1	4	116	0	1	0	0	0	0	0	0	0	12765	638	22	4		4	PSG6	19	43439524	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	423607	43439524	15689459	1899	110895											
PSG4	5672	broad.mit.edu	37	chr19	43699635	43699635	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttttagggaggcacagacTttctcaagtgtcaattgagc	11	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43699635	A	A	43699635	1	1	116	0	1	0	0	0	0	0	0	0	12763	1624	56	5		5	PSG4	19	43699635	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	260111	43699635	15429348	1900	110896											
ZNF224	7767	broad.mit.edu	37	chr19	44599279	44599279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagaagagctgcagggaGggacttcttggcttctgagg	15	8	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44599279	T	T	44599279	1	4	116	0	1	0	0	0	0	0	0	0	17904	1015	35	2		2	ZNF224	19	44599279	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	899644	44599279	14529704	1901	110897											
ZNF229	7772	broad.mit.edu	37	chr19	44933603	44933603	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccagggtgaatgtgctgGtgtttgtgcagtgcagactt	14	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44933603	A	A	44933603	2	1	116	1	0	0	0	0	0	0	0	1	17908	1252	44	4		4	ZNF229	19	44933603	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	334324	44933603	14195380	1902	110898											
DMPK	1760	broad.mit.edu	37	chr19	46275986	46275986	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcggcctccagttccatgggTgtggggcctgggacctcact	14	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46275986	A	A	46275986	2	1	116	1	0	0	0	0	0	0	0	1	4624	1683	59	5		5	DMPK	19	46275986	Silent	SNP	T	TCGA-44-3918-01A-01D-1105-08	1342383	46275986	12852997	1903	110899											
SYMPK	8189	broad.mit.edu	37	chr19	46319799	46319799	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctgcttgccgctggcctCcaagatggtcatgatggagt	12	12	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46319799	T	T	46319799	3	4	116	1	0	0	0	0	1	0	0	0	15558	864	30	4	541	4	SYMPK	19	46319799	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	43813	46319799	12809184	1904	110900											
ELSPBP1	64100	broad.mit.edu	37	chr19	48517467	48517467	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttcctttcacctacaaggGatctgtttacttcacttgca	5	12	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48517467	A	A	48517467	3	1	116	1	0	0	0	0	1	0	0	0	5125	1174	41	4	116	4	ELSPBP1	19	48517467	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2197668	48517467	10611516	1905	110901											
PLA2G4C	8605	broad.mit.edu	37	chr19	48591944	48591944	+	Frame_Shift_Del	DEL	T	-	-													gatgaagtaggatgcttaccTttcagggtcagattccttaa							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48591944	-	-	48591944	7	5	116	1	0	1	0	1	0	0	0	0	12098	1623	56	0	876	0	PLA2G4C	19	48591944	Frame_Shift_Del	DEL	T	TCGA-44-3918-01A-01D-1105-08	74477	48591944	10537039	1906	110902											
LIG1	3978	broad.mit.edu	37	chr19	48664733	48664733	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccggagagtcactctcggAcaccactccattccactcct	6	18	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48664733	T	T	48664733	3	4	116	1	0	0	0	0	1	0	0	0	8853	275	10	5	2720	5	LIG1	19	48664733	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	72789	48664733	10464250	1907	110903											
CYTH2	9266	broad.mit.edu	37	chr19	48973506	48973506	+	Intron	SNP	A	G	G													ttcttctgtgcagacataggAagccccttacacatcctctc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48973506	G	G	48973506	1	3	116	0	1	0	0	0	0	0	0	0	4237	261	9	5		5	CYTH2	19	48973506	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	308773	48973506	10155477	1908	110904	481	2									
CYTH2	9266	broad.mit.edu	37	chr19	48973508	48973508	+	Intron	SNP	G	T	T													cttctgtgcagacataggaaGccccttacacatcctctccc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48973508	T	T	48973508	1	4	116	0	1	0	0	0	0	0	0	0	4237	986	34	3		3	CYTH2	19	48973508	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2	48973508	10155475	1909	110905	481	2									
FGF21	26291	broad.mit.edu	37	chr19	49260110	49260110	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggacagagccggatggtgGgacagagtcgggtggtggga	22	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49260110	A	A	49260110	1	1	116	0	1	0	0	0	0	0	0	0	5907	1247	43	4		4	FGF21	19	49260110	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	286602	49260110	9868873	1910	110906											
C19orf76	199800	broad.mit.edu	37	chr19	50193051	50193051	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcgggaacggggcggggTggccgcaactacgggccacg	21	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50193051	G	G	50193051	1	3	116	0	1	0	0	0	0	0	0	0	1970	1711	59	5		5	C19orf76	19	50193051	5'UTR	SNP	T	TCGA-44-3918-01A-01D-1105-08	932941	50193051	8935932	1911	110907											
SHANK1	50944	broad.mit.edu	37	chr19	51192283	51192283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggagaggccgagcagGggatggggctcagacccaag	21	8	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51192283	T	T	51192283	1	4	116	0	1	0	0	0	0	0	0	0	14377	1247	43	2		2	SHANK1	19	51192283	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	999232	51192283	7936700	1912	110908											
KLK15	55554	broad.mit.edu	37	chr19	51329777	51329777	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccaagcctaaccctagcAtcttctctggcccaaagcaa	5	16	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51329777	T	T	51329777	1	4	116	0	1	0	0	0	0	0	0	0	8474	232	8	5		5	KLK15	19	51329777	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	137494	51329777	7799206	1913	110909											
KLK4	9622	broad.mit.edu	37	chr19	51412000	51412000	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttgtactctgggtgccGtacggagaggctggcctcca	14	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51412000	T	T	51412000	2	4	116	1	0	0	0	0	0	0	0	1	8477	1144	40	3		3	KLK4	19	51412000	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	82223	51412000	7716983	1914	110910											
CD33	945	broad.mit.edu	37	chr19	51729106	51729106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctggcactctagaacccGgccactccaaaaacctgacc	6	18	1	2	rs76522752		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51729106	T	T	51729106	3	4	116	1	0	0	0	0	1	0	0	0	3035	1116	39	1	476	1	CD33	19	51729106	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	317106	51729106	7399877	1915	110911											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918651	51918651	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggcacaggctttggccctCcagtactgggagagacgtgc	14	12	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51918651	G	G	51918651	3	3	116	1	0	0	0	0	1	0	0	0	14419	864	30	4	999	4	SIGLEC10	19	51918651	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	189545	51918651	7210332	1916	110912											
SIGLEC5	8778	broad.mit.edu	37	chr19	52133030	52133030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcccaactcctgtccctGttctcatacgggggtctcca	8	17	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52133030	T	T	52133030	1	4	116	0	1	0	0	0	0	0	0	0	14424	1392	48	3		3	SIGLEC5	19	52133030	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	214379	52133030	6995953	1917	110913											
PPP2R1A	5518	broad.mit.edu	37	chr19	52728931	52728931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgccccagtccatcctGgctcaccctctctctccctg	6	20	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52728931	T	T	52728931	1	4	116	0	1	0	0	0	0	0	0	0	12483	1363	47	2		2	PPP2R1A	19	52728931	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	595901	52728931	6400052	1918	110914											
ZNF677	342926	broad.mit.edu	37	chr19	53747151	53747151	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgaatgtaaacagtccCtgaaataaaaacacacttca	4	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53747151	A	A	53747151	5	1	116	1	0	0	0	0	0	0	1	0	18211	695	24	2	1747	2	ZNF677	19	53747151	Splice_Site	SNP	C	TCGA-44-3918-01A-01D-1105-08	1018220	53747151	5381832	1919	110915											
NLRP12	91662	broad.mit.edu	37	chr19	54304410	54304410	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcagagacaacctggcctCcgtggtcccaggtgagaggg	16	11	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54304410	T	T	54304410	1	4	116	0	1	0	0	0	0	0	0	0	10569	870	30	4		4	NLRP12	19	54304410	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	557259	54304410	4824573	1920	110916											
PRKCG	5582	broad.mit.edu	37	chr19	54410213	54410213	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccggcggcagccccacttCacccccaacttcaccacccc	6	23	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54410213	T	T	54410213	1	4	116	0	1	0	0	0	0	0	0	0	12618	841	29	4		4	PRKCG	19	54410213	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	105803	54410213	4718770	1921	110917											
VSTM1	284415	broad.mit.edu	37	chr19	54554659	54554659	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatctcctttctaattatCttacctgttttcattgaggg	5	9	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54554659	A	A	54554659	1	1	116	0	1	0	0	0	0	0	0	0	17355	928	32	3		3	VSTM1	19	54554659	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	144446	54554659	4574324	1922	110918											
TSEN34	79042	broad.mit.edu	37	chr19	54695493	54695493	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcgaactcgggttcggtggGagcgggacctgggagtcaag	18	9	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54695493	T	T	54695493	1	4	116	0	1	0	0	0	0	0	0	0	16738	1189	41	3		3	TSEN34	19	54695493	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	140834	54695493	4433490	1923	110919											
LILRB4	11006	broad.mit.edu	37	chr19	55175136	55175136	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgactgatgaggatgacgGgggggtcctggggctgagag	22	5	0	5			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55175136	A	A	55175136	1	1	116	0	1	0	0	0	0	0	0	0	8865	1247	43	4		4	LILRB4	19	55175136	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	479643	55175136	3953847	1924	110920											
KIR3DL1	3811	broad.mit.edu	37	chr19	55329796	55329796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacaaacccttcctgtctGcctggcccagcgctgtggtg	12	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55329796	T	T	55329796	3	4	116	1	0	0	0	0	1	0	0	0	8391	1319	46	3	107	3	KIR3DL1	19	55329796	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	154660	55329796	3799187	1925	110921											
NLRP7	199713	broad.mit.edu	37	chr19	55450980	55450980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagctgtgcgccctgcgGgaaccggctgcagaggaaac	15	14	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55450980	T	T	55450980	3	4	116	1	0	0	0	0	1	0	0	0	10577	1232	43	2	1938	2	NLRP7	19	55450980	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	121184	55450980	3678003	1926	110922											
NLRP2	55655	broad.mit.edu	37	chr19	55501843	55501843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagttggacctgtcaaccGtgttgccatttgtgattctt	10	8	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55501843	T	T	55501843	1	4	116	0	1	0	0	0	0	0	0	0	10572	1160	40	3		3	NLRP2	19	55501843	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	50863	55501843	3627140	1927	110923											
RDH13	112724	broad.mit.edu	37	chr19	55568079	55568079	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaagccaagtccaggtgCcgggcgttgacatggtgatt	16	8	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55568079	A	A	55568079	2	1	116	1	0	0	0	0	0	0	0	1	13300	726	26	3		3	RDH13	19	55568079	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	66236	55568079	3560904	1928	110924											
PTPRH	5794	broad.mit.edu	37	chr19	55702802	55702802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccctctgacctagctgGcagccagcaaacaccccttg	7	18	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55702802	T	T	55702802	1	4	116	0	1	0	0	0	0	0	0	0	12911	1218	42	3		3	PTPRH	19	55702802	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	134723	55702802	3426181	1929	110925											
CCDC106	29903	broad.mit.edu	37	chr19	56160838	56160838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagacccagctgcacatGgctctggagaggaactcctg	12	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56160838	T	T	56160838	3	4	116	1	0	0	0	0	1	0	0	0	2767	1348	47	2	211	2	CCDC106	19	56160838	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	458036	56160838	2968145	1930	110926											
ZNF835	90485	broad.mit.edu	37	chr19	57184254	57184254	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaaaaagacatcattctgGactaacagtttccattcttc	6	9	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57184254	T	T	57184254	1	4	116	0	1	0	0	0	0	0	0	0	18315	1189	41	3		3	ZNF835	19	57184254	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	1023416	57184254	1944729	1931	110927											
USP29	57663	broad.mit.edu	37	chr19	57640672	57640672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagcaataggaagaaccCatcaagtttagaggatttag	9	6	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57640672	A	A	57640672	3	1	116	1	0	0	0	0	1	0	0	0	17186	594	21	2	631	2	USP29	19	57640672	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	456418	57640672	1488311	1932	110928											
USP29	57663	broad.mit.edu	37	chr19	57642509	57642509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggggatcctctccaggcCtacagactcatcagtgttgt	11	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57642509	A	A	57642509	2	1	116	1	0	0	0	0	0	0	0	1	17186	668	24	2		2	USP29	19	57642509	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1837	57642509	1486474	1933	110929											
ZIM3	114026	broad.mit.edu	37	chr19	57646288	57646288	+	Nonstop_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaagtgcatggggctcctAtctggagtgaattcttttct	10	7	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57646288	G	G	57646288	4	3	116	1	0	0	0	0	0	0	0	0	17811	462	16	5	5	5	ZIM3	19	57646288	Nonstop_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	3779	57646288	1482695	1934	110930											
ZIM3	114026	broad.mit.edu	37	chr19	57648334	57648334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgggtttggtggtttcccCttgtcctgtgatggaagata	13	7	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57648334	T	T	57648334	3	4	116	1	0	0	0	0	1	0	0	0	17811	681	24	4	1278	4	ZIM3	19	57648334	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2046	57648334	1480649	1935	110931											
ZNF773	374928	broad.mit.edu	37	chr19	58016876	58016876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgataccaaggcaaggtgtcGtcgctgatttctatcttttc	9	9	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58016876	T	T	58016876	1	4	116	0	1	0	0	0	0	0	0	0	18275	1160	40	3		3	ZNF773	19	58016876	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	368542	58016876	1112107	1936	110932											
ZNF154	7710	broad.mit.edu	37	chr19	58213094	58213094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcataaggcttctccccaGtgtgaaccctcctgtgctta	7	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58213094	T	T	58213094	3	4	116	1	0	0	0	0	1	0	0	0	17861	1029	36	3	94	3	ZNF154	19	58213094	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	196218	58213094	915889	1937	110933											
ZSCAN1	284312	broad.mit.edu	37	chr19	58564632	58564632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcaccggccacatgtgcCcttgtatcttaaaggacaga	9	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58564632	A	A	58564632	1	1	116	0	1	0	0	0	0	0	0	0	18355	638	22	2		2	ZSCAN1	19	58564632	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	351538	58564632	564351	1938	110934											
FASTKD5	60493	broad.mit.edu	37	chr20	3128165	3128165	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcaatgccaactgtaccatCgagggtatatagttccttaa	7	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3128165	T	T	3128165	3	4	116	1	0	0	0	0	1	0	0	0	5745	884	31	4	746	4	FASTKD5	20	3128165	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08		3128165	59897355	1939	110935											
SIGLEC1	6614	broad.mit.edu	37	chr20	3683828	3683828	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgtgtccagtgccacccCaccctggcctcttacggttg	10	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3683828	T	T	3683828	1	4	116	0	1	0	0	0	0	0	0	0	14418	609	21	4		4	SIGLEC1	20	3683828	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	555663	3683828	59341692	1940	110936											
CDS2	8760	broad.mit.edu	37	chr20	5166437	5166437	+	Frame_Shift_Del	DEL	G	-	-													agacctgggaaggcttcattGggggcttctttgctactgtg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5166437	-	-	5166437	7	5	116	1	0	1	0	1	0	0	0	0	3208	1348	47	0	827	0	CDS2	20	5166437	Frame_Shift_Del	DEL	G	TCGA-44-3918-01A-01D-1105-08	1482609	5166437	57859083	1941	110937											
CHGB	1114	broad.mit.edu	37	chr20	5903859	5903859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtccaggcccctgaggacCtggagtgggagcgctatagg	17	11	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5903859	A	A	5903859	3	1	116	1	0	0	0	0	1	0	0	0	3370	680	24	2	1083	2	CHGB	20	5903859	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	737422	5903859	57121661	1942	110938											
PLCB1	23236	broad.mit.edu	37	chr20	8696897	8696897	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactttccttcttctgttcTtgttctcccttagcccaaag	4	14	4	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8696897	C	C	8696897	1	2	116	0	1	0	0	0	0	0	0	0	12122	1624	56	5		5	PLCB1	20	8696897	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2793038	8696897	54328623	1943	110939											
ANKRD5	63926	broad.mit.edu	37	chr20	10033777	10033778	+	Frame_Shift_Ins	INS	-	T	T													agggcatagtgccatggacgINSttgcaaaggcatatgctgat							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10033778	T	T	10033777	7	5	116	1	0	1	1	0	0	0	0	0	676	1145	40	0	1914	0	ANKRD5	20	10033777	Frame_Shift_Ins	INS	-	TCGA-44-3918-01A-01D-1105-08	1336880	10033777	52991743	1944	110940											
C20orf26	26074	broad.mit.edu	37	chr20	20033430	20033430	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcgggggaagaagggagagcGaggaaactaccattcccagc	16	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20033430	C	C	20033430	1	2	116	0	1	0	0	0	0	0	0	0	2128	1073	37	4		4	C20orf26	20	20033430	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	9999653	20033430	42992090	1945	110941											
PAX1	5075	broad.mit.edu	37	chr20	21687445	21687445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcggtgagctccatcagccGcatcctgcgcaacaagatcg	10	14	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21687445	T	T	21687445	3	4	116	1	0	0	0	0	1	0	0	0	11572	1087	38	3	662	3	PAX1	20	21687445	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1654015	21687445	41338075	1946	110942											
PAX1	5075	broad.mit.edu	37	chr20	21689833	21689833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcaggattttctgctGctgacggtccctctctatcc	10	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21689833	T	T	21689833	1	4	116	0	1	0	0	0	0	0	0	0	11572	1334	46	3		3	PAX1	20	21689833	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2388	21689833	41335687	1947	110943											
NAPB	63908	broad.mit.edu	37	chr20	23360135	23360135	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagcttctaggagtttctGgtagcataaaaatattttaa	8	4	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23360135	A	A	23360135	1	1	116	0	1	0	0	0	0	0	0	0	10256	1363	47	4		4	NAPB	20	23360135	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1670302	23360135	39665385	1948	110944											
CST11	140880	broad.mit.edu	37	chr20	23433496	23433496	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgttctctgtactcctcaggGacaagtcgaatcacactgac	8	12	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23433496	A	A	23433496	1	1	116	0	1	0	0	0	0	0	0	0	4005	1189	41	4		4	CST11	20	23433496	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	73361	23433496	39592024	1949	110945											
CST1	1469	broad.mit.edu	37	chr20	23731392	23731392	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacccactcatcattgaggtCtgcgttatagatgccacccg	8	13	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23731392	T	T	23731392	3	4	116	1	0	0	0	0	1	0	0	0	4004	913	32	4	325	4	CST1	20	23731392	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	297896	23731392	39294128	1950	110946											
TMEM90B	79953	broad.mit.edu	37	chr20	24565735	24565736	+	Intron	DNP	CC	AA	AA													gcaaggaagcccaaacagctCctgctacagctgggtcggca							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24565736	AA	AA	24565735	1	1	116	0	1	0	0	0	0	0	0	0	16342	870	30	3		3	TMEM90B	20	24565735	Intron	DNP	CC	TCGA-44-3918-01A-01D-1105-08	834343	24565735	38459785	1951	110947											
DNMT3B	1789	broad.mit.edu	37	chr20	31386209	31386209	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggaagtggtaaggggGtggcacaggagaccagctct	17	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31386209	A	A	31386209	1	1	116	0	1	0	0	0	0	0	0	0	4717	1276	44	4		4	DNMT3B	20	31386209	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6820474	31386209	31639311	1952	110948											
BPIL1	80341	broad.mit.edu	37	chr20	31601492	31601492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggccatctcactctgggaGtggggggcctgcctgggcca	17	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31601492	T	T	31601492	1	4	116	0	1	0	0	0	0	0	0	0	1500	1044	36	3		3	BPIL1	20	31601492	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	215283	31601492	31424028	1953	110949											
C20orf185	359710	broad.mit.edu	37	chr20	31647780	31647780	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagctcaaggggcacacCcatccttatcctcaagcgct	9	15	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31647780	T	T	31647780	3	4	116	1	0	0	0	0	1	0	0	0	2119	623	22	4	484	4	C20orf185	20	31647780	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	46288	31647780	31377740	1954	110950											
MYH7B	57644	broad.mit.edu	37	chr20	33575201	33575201	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcagtcttacctggccctGcctcctcagctccaaaccct	5	20	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33575201	A	A	33575201	1	1	116	0	1	0	0	0	0	0	0	0	10134	1334	46	4		4	MYH7B	20	33575201	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1927421	33575201	29450319	1955	110951											
CEP250	11190	broad.mit.edu	37	chr20	34059740	34059740	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagactcttcagacaacattAgcattgacatatggtcaggg	9	9	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34059740	T	T	34059740	1	4	116	0	1	0	0	0	0	0	0	0	3282	435	15	5		5	CEP250	20	34059740	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	484539	34059740	28965780	1956	110952											
CEP250	11190	broad.mit.edu	37	chr20	34090885	34090885	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcctggccctggaactggAggaaaaccatcacaagatgg	12	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34090885	T	T	34090885	3	4	116	1	0	0	0	0	1	0	0	0	3282	304	11	5	4794	5	CEP250	20	34090885	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	31145	34090885	28934635	1957	110953											
C20orf132	140699	broad.mit.edu	37	chr20	35743538	35743538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgttatgcccattaccCtcctcctaggaaagtctgtc	7	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35743538	A	A	35743538	1	1	116	0	1	0	0	0	0	0	0	0	2108	696	24	2		2	C20orf132	20	35743538	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1652653	35743538	27281982	1958	110954											
TGM2	7052	broad.mit.edu	37	chr20	36766847	36766847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatcacaggaagggggctGcaacagggcgagctgtcttc	15	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36766847	T	T	36766847	1	4	116	0	1	0	0	0	0	0	0	0	15953	1334	46	3		3	TGM2	20	36766847	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1023309	36766847	26258673	1959	110955											
KIAA1755	85449	broad.mit.edu	37	chr20	36854137	36854137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgcgggcagctggctgGggtccacatggtggctgagg	20	9	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36854137	T	T	36854137	3	4	116	1	0	0	0	0	1	0	0	0	8327	1232	43	2	1531	2	KIAA1755	20	36854137	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	87290	36854137	26171383	1960	110956											
LBP	3929	broad.mit.edu	37	chr20	36983646	36983646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggaaggggtggagagGgctccctttgtggactggcc	19	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36983646	T	T	36983646	1	4	116	0	1	0	0	0	0	0	0	0	8723	1247	43	2		2	LBP	20	36983646	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	129509	36983646	26041874	1961	110957											
DHX35	60625	broad.mit.edu	37	chr20	37597998	37597998	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactgtaagggatgacttttCatactgtgtattttttagtt	8	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37597998	G	G	37597998	1	3	116	0	1	0	0	0	0	0	0	0	4548	841	29	4		4	DHX35	20	37597998	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	614352	37597998	25427522	1962	110958											
CHD6	84181	broad.mit.edu	37	chr20	40080657	40080657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcaggatgtccttccacCggccccagctgacagtggac	12	14	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40080657	A	A	40080657	3	1	116	1	0	0	0	0	1	0	0	0	3360	652	23	1	4879	1	CHD6	20	40080657	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2482659	40080657	22944863	1963	110959											
RIMS4	140730	broad.mit.edu	37	chr20	43400047	43400047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcccccttcagcctccgGctgtccccttctgggcaaag	10	17	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43400047	T	T	43400047	3	4	116	1	0	0	0	0	1	0	0	0	13481	1194	42	3	724	3	RIMS4	20	43400047	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	3319390	43400047	19625473	1964	110960											
SLC12A5	57468	broad.mit.edu	37	chr20	44675012	44675012	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacatgtttgtgaatctggCctgtgcagtgcagacgctgc	12	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44675012	T	T	44675012	3	4	116	1	0	0	0	0	1	0	0	0	14499	739	26	4	1903	4	SLC12A5	20	44675012	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1274965	44675012	18350508	1965	110961											
SLC35C2	51006	broad.mit.edu	37	chr20	44986052	44986052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgcagggggggttttGtgggtgtgtggtggggcagt	24	3	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44986052	T	T	44986052	1	4	116	0	1	0	0	0	0	0	0	0	14694	1392	48	3		3	SLC35C2	20	44986052	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	311040	44986052	18039468	1966	110962											
NCOA3	8202	broad.mit.edu	37	chr20	46256793	46256793	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactctttttttgtctctctCtctctctgtgtatacgtaca	4	11	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46256793	G	G	46256793	1	3	116	0	1	0	0	0	0	0	0	0	10325	928	32	4		4	NCOA3	20	46256793	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1270741	46256793	16768727	1967	110963											
ADNP	23394	broad.mit.edu	37	chr20	49530773	49530773	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacaatcatccaagacactGagggtaacactcctccacac	5	16	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49530773	A	A	49530773	1	1	116	0	1	0	0	0	0	0	0	0	323	1305	45	4		4	ADNP	20	49530773	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3273980	49530773	13494747	1968	110964											
RAE1	8480	broad.mit.edu	37	chr20	55948931	55948931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagataagtggcttatgctGtaggcttcaggtttctgtgg	15	5	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55948931	T	T	55948931	1	4	116	0	1	0	0	0	0	0	0	0	13106	1392	48	3		3	RAE1	20	55948931	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6418158	55948931	7076589	1969	110965											
EDN3	1908	broad.mit.edu	37	chr20	57899434	57899434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggctttagacctccaccatCcaaagctcatgcccggcagt	8	15	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57899434	A	A	57899434	3	1	116	1	0	0	0	0	1	0	0	0	4958	855	30	3	694	3	EDN3	20	57899434	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1950503	57899434	5126086	1970	110966											
CDH4	1002	broad.mit.edu	37	chr20	60348120	60348120	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctccgaaggacaccctgcTgccgtggccccagcaccaga	11	18	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60348120	A	A	60348120	3	1	116	1	0	0	0	0	1	0	0	0	3142	1580	55	5	472	5	CDH4	20	60348120	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	2448686	60348120	2677400	1971	110967											
CDH4	1002	broad.mit.edu	37	chr20	60470149	60470149	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgcatggcccgtgcagggcAggaatgcactggcgtgcggc	17	12	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60470149	T	T	60470149	1	4	116	0	1	0	0	0	0	0	0	0	3142	203	7	5		5	CDH4	20	60470149	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	122029	60470149	2555371	1972	110968											
CABLES2	81928	broad.mit.edu	37	chr20	60965853	60965853	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggggatgaaagcgacgtCtctttccaaggaaatggcaa	12	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60965853	G	G	60965853	1	3	116	0	1	0	0	0	0	0	0	0	2556	928	32	4		4	CABLES2	20	60965853	3'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	495704	60965853	2059667	1973	110969											
NTSR1	4923	broad.mit.edu	37	chr20	61340789	61340789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcgctcttcgtggtggGcacggtgggcaacacggtga	17	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61340789	T	T	61340789	3	4	116	1	0	0	0	0	1	0	0	0	10805	1203	42	3	232	3	NTSR1	20	61340789	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	374936	61340789	1684731	1974	110970											
COL9A3	1299	broad.mit.edu	37	chr20	61460892	61460892	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctctgggaggggaggcgAggggccgggaggcaaggggc	23	8	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61460892	T	T	61460892	1	4	116	0	1	0	0	0	0	0	0	0	3741	319	11	5		5	COL9A3	20	61460892	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	120103	61460892	1564628	1975	110971											
KCNQ2	3785	broad.mit.edu	37	chr20	62046273	62046273	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccttctgagttctgccgtGacgcggcacccttgatgcgg	12	14	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62046273	A	A	62046273	3	1	116	1	0	0	0	0	1	0	0	0	8153	1294	45	4	1130	4	KCNQ2	20	62046273	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	585381	62046273	979247	1976	110972											
KCNQ2	3785	broad.mit.edu	37	chr20	62065167	62065167	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccggcggcggtacctgtaCatgggcacggtgaccgttcg	16	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62065167	T	T	62065167	3	4	116	1	0	0	0	0	1	0	0	0	8153	478	17	4	1609	4	KCNQ2	20	62065167	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	18894	62065167	960353	1977	110973											
KCNQ2	3785	broad.mit.edu	37	chr20	62069894	62069894	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccacagacagggcaatgCcaaagccccagcggcctcca	9	17	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62069894	A	A	62069894	1	1	116	0	1	0	0	0	0	0	0	0	8153	754	26	3		3	KCNQ2	20	62069894	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4727	62069894	955626	1978	110974											
EEF1A2	1917	broad.mit.edu	37	chr20	62129281	62129281	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaggctggacaggcatcCctgcccacaaaccaagcccc	9	18	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62129281	A	A	62129281	1	1	116	0	1	0	0	0	0	0	0	0	4964	638	22	2		2	EEF1A2	20	62129281	5'Flank	SNP	C	TCGA-44-3918-01A-01D-1105-08	59387	62129281	896239	1979	110975											
C20orf135	140701	broad.mit.edu	37	chr20	62493477	62493478	+	Missense_Mutation	DNP	CC	AA	AA													tctgtctgcaccgctcgaggCcggctactccgtgctgggct							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	62493478	AA	AA	62493477	3	1	116	1	0	0	0	0	1	0	0	0	2110	739	26	3	586	3	C20orf135	20	62493477	Missense_Mutation	DNP	CC	TCGA-44-3918-01A-01D-1105-08	364196	62493477	532043	1980	110976											
TPTE	7179	broad.mit.edu	37	chr21	10933880	10933880	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctttacagtgaatcgctacGatgttttcaagatcttgagc	8	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10933880	T	T	10933880	2	4	116	1	0	0	0	0	0	0	0	1	16554	1048	37	3		3	TPTE	21	10933880	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08		10933880	37196015	1981	110977											
TPTE	7179	broad.mit.edu	37	chr21	10951340	10951340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaatagaacgatactcCaaaggaatataaagtttgct	8	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10951340	A	A	10951340	3	1	116	1	0	0	0	0	1	0	0	0	16554	593	21	2	1343	2	TPTE	21	10951340	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	17460	10951340	37178555	1982	110978											
TPTE	7179	broad.mit.edu	37	chr21	10951375	10951375	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgctgtcagtgaaaattaGgtcggcaaggatgagagtga	14	4	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10951375	A	A	10951375	2	1	116	1	0	0	0	0	0	0	0	1	16554	991	35	4		4	TPTE	21	10951375	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	35	10951375	37178520	1983	110979											
TPTE	7179	broad.mit.edu	37	chr21	10969921	10969921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggatggatggatggatGgatggggtatacttgctcat	17	3	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10969921	T	T	10969921	1	4	116	0	1	0	0	0	0	0	0	0	16554	1363	47	2		2	TPTE	21	10969921	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	18546	10969921	37159974	1984	110980											
TPTE	7179	broad.mit.edu	37	chr21	10971226	10971226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcggcctgcttcagcctcCcaaagtgctcagattacagg	9	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10971226	A	A	10971226	1	1	116	0	1	0	0	0	0	0	0	0	16554	638	22	2		2	TPTE	21	10971226	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1305	10971226	37158669	1985	110981											
TPTE	7179	broad.mit.edu	37	chr21	10971846	10971846	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacataacggtagagctctgGagggggtgaaataattccag	13	7	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971846	T	T	10971846	1	4	116	0	1	0	0	0	0	0	0	0	16554	1189	41	3		3	TPTE	21	10971846	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	620	10971846	37158049	1986	110982											
BAGE2	85319	broad.mit.edu	37	chr21	11047590	11047590	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatcttgctatcttctcccGattgtctaaaaagtaagata	6	9	4	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11047590	T	T	11047590	1	4	116	0	1	0	0	0	0	0	0	0	1297	1073	37	3		3	BAGE2	21	11047590	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	75744	11047590	37082305	1987	110983											
SAMSN1	64092	broad.mit.edu	37	chr21	15882899	15882899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgccaggctcctgaggaaGttctaattgacccatcctgg	11	11	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15882899	T	T	15882899	1	4	116	0	1	0	0	0	0	0	0	0	13941	1044	36	3		3	SAMSN1	21	15882899	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4835309	15882899	32246996	1988	110984											
TMPRSS15	5651	broad.mit.edu	37	chr21	19653279	19653279	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttatgaattaatgcattGacattgataatatttgaaat	5	3	0	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19653279	A	A	19653279	1	1	116	0	1	0	0	0	0	0	0	0	16369	1305	45	4		4	TMPRSS15	21	19653279	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3770380	19653279	28476616	1989	110985											
TMPRSS15	5651	broad.mit.edu	37	chr21	19666984	19666984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgactgtaatagaagaaCaatcatatttttaaaattat	5	3	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19666984	A	A	19666984	1	1	116	0	1	0	0	0	0	0	0	0	16369	493	17	3		3	TMPRSS15	21	19666984	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	13705	19666984	28462911	1990	110986											
APP	351	broad.mit.edu	37	chr21	27462312	27462312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcttgcactgcttgcggCcccgcttgcaccagttctgg	13	14	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462312	A	A	27462312	3	1	116	1	0	0	0	0	1	0	0	0	817	739	26	3	2074	3	APP	21	27462312	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	7795328	27462312	20667583	1991	110987											
ADAMTS5	11096	broad.mit.edu	37	chr21	28306779	28306779	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgactgatgagaaaatcActtactgaataatatttttt	5	5	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28306779	G	G	28306779	1	3	116	0	1	0	0	0	0	0	0	0	269	174	6	5		5	ADAMTS5	21	28306779	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	844467	28306779	19823116	1992	110988											
CLDN17	26285	broad.mit.edu	37	chr21	31538801	31538801	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccagagcccttcccagagCctctcaaagacaataatgtt	6	13	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31538801	G	G	31538801	3	3	116	1	0	0	0	0	1	0	0	0	3509	738	26	4	543	4	CLDN17	21	31538801	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3232022	31538801	16591094	1993	110989											
CLDN8	9073	broad.mit.edu	37	chr21	31588141	31588141	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgatgttgttttcaatgaAggccgacactctccactgag	9	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31588141	T	T	31588141	3	4	116	1	0	0	0	0	1	0	0	0	3523	72	3	5	578	5	CLDN8	21	31588141	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	49340	31588141	16541754	1994	110990											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654874	31654874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcaattgcatacatacCcattggtctgggtgcttggg	13	8	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31654874	A	A	31654874	3	1	116	1	0	0	0	0	1	0	0	0	8614	623	22	2	391	2	KRTAP24-1	21	31654874	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	66733	31654874	16475021	1995	110991											
KRTAP19-7	337974	broad.mit.edu	37	chr21	31933529	31933529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggaagctgccacatccaCagctatagccatagcccagg	10	14	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31933529	A	A	31933529	3	1	116	1	0	0	0	0	1	0	0	0	8605	478	17	3	114	3	KRTAP19-7	21	31933529	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	278655	31933529	16196366	1996	110992											
GART	2618	broad.mit.edu	37	chr21	34906819	34906819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagctactgtgcctggCcactgacctgtgtatttaaa	11	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34906819	A	A	34906819	1	1	116	0	1	0	0	0	0	0	0	0	6305	754	26	3		3	GART	21	34906819	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2973290	34906819	13223076	1997	110993											
GART	2618	broad.mit.edu	37	chr21	34907023	34907023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgctgttgggccaaagCattgcactcctgcagacctc	9	14	1	1	rs145820555	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34907023	A	A	34907023	3	1	116	1	0	0	0	0	1	0	0	0	6305	710	25	3	2834	3	GART	21	34907023	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	204	34907023	13222872	1998	110994											
KCNE1	3753	broad.mit.edu	37	chr21	35821667	35821667	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacataggccttgtccttcTcttgccaggcatcggactcg	11	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35821667	C	C	35821667	3	2	116	1	0	0	0	0	1	0	0	0	8091	1551	54	5	127	5	KCNE1	21	35821667	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	914644	35821667	12308228	1999	110995											
RUNX1	861	broad.mit.edu	37	chr21	36421221	36421221	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctcctgaaaatgcaccctCttctgaaggcgggggactca	10	13	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36421221	G	G	36421221	1	3	116	0	1	0	0	0	0	0	0	0	13857	928	32	4		4	RUNX1	21	36421221	5'UTR	SNP	C	TCGA-44-3918-01A-01D-1105-08	599554	36421221	11708674	2000	110996											
DSCAM	1826	broad.mit.edu	37	chr21	41684194	41684194	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctgccaggtgatcgtgaTgggtaagtcccctgagacca	12	11	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41684194	C	C	41684194	3	2	116	1	0	0	0	0	1	0	0	0	4808	1464	51	5	4262	5	DSCAM	21	41684194	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	5262973	41684194	6445701	2001	110997											
PKNOX1	5316	broad.mit.edu	37	chr21	44449838	44449838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgagctaccgcgcccgGcccagaaacagtttcttaaa	10	13	1	2	rs143898734		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44449838	T	T	44449838	1	4	116	0	1	0	0	0	0	0	0	0	12077	1218	42	3		3	PKNOX1	21	44449838	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2765644	44449838	3680057	2002	110998											
AIRE	326	broad.mit.edu	37	chr21	45709652	45709652	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtggcccgaagcctctGgttcgagccaagggagccca	14	13	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45709652	T	T	45709652	2	4	116	1	0	0	0	0	0	0	0	1	437	1335	47	2		2	AIRE	21	45709652	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	1259814	45709652	2420243	2003	110999											
TRPM2	7226	broad.mit.edu	37	chr21	45860560	45860560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagctgggccggggtcctGtgtgtgctggaagctgtgct	19	8	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45860560	T	T	45860560	1	4	116	0	1	0	0	0	0	0	0	0	16711	1392	48	3		3	TRPM2	21	45860560	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	150908	45860560	2269335	2004	111000											
C21orf29	54084	broad.mit.edu	37	chr21	46097579	46097579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaccaacactgtatcacCtgcggttgctgaagctggag	13	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46097579	A	A	46097579	1	1	116	0	1	0	0	0	0	0	0	0	2146	696	24	2		2	C21orf29	21	46097579	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	237019	46097579	2032316	2005	111001											
MCM3AP	8888	broad.mit.edu	37	chr21	47692686	47692686	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagtggatgtgaaaccgggTgcacttctcaatcagggaca	12	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47692686	A	A	47692686	3	1	116	1	0	0	0	0	1	0	0	0	9481	1696	59	5	3772	5	MCM3AP	21	47692686	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	1595107	47692686	437209	2006	111002											
POTEH	23784	broad.mit.edu	37	chr22	16287207	16287207	+	Intron	SNP	C	A	A													ccggccaggagggtatgtccCcatcatcctcccacatccca							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287207	A	A	16287207	1	1	116	0	1	0	0	0	0	0	0	0	12363	638	22	2		2	POTEH	22	16287207	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08		16287207	35017359	2007	111003	482	2									
POTEH	23784	broad.mit.edu	37	chr22	16287211	16287211	+	Intron	SNP	C	T	T													ccaggagggtatgtccccatCatcctcccacatcccacctc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287211	T	T	16287211	1	4	116	0	1	0	0	0	0	0	0	0	12363	841	29	4		4	POTEH	22	16287211	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4	16287211	35017355	2008	111004	482	2									
POTEH	23784	broad.mit.edu	37	chr22	16287380	16287380	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcgacggacgtggtacCtcggctccatgaaagcgctg	12	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287380	T	T	16287380	3	4	116	1	0	0	0	0	1	0	0	0	12363	681	24	4	1171	4	POTEH	22	16287380	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	169	16287380	35017186	2009	111005											
POTEH	23784	broad.mit.edu	37	chr22	16287853	16287853	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcttcttcacagaggaGgcagccggcattgaaccagc	12	11	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287853	T	T	16287853	2	4	116	1	0	0	0	0	0	0	0	1	12363	987	35	2		2	POTEH	22	16287853	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	473	16287853	35016713	2010	111006											
GAB4	128954	broad.mit.edu	37	chr22	17468885	17468885	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctggctggcgtgctggtgCgagcggagacaccccggagg	18	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17468885	T	T	17468885	2	4	116	1	0	0	0	0	0	0	0	1	6211	755	27	4		4	GAB4	22	17468885	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	1181032	17468885	33835681	2011	111007											
IL17RA	23765	broad.mit.edu	37	chr22	17581332	17581332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaagcccatccctgatGgggacccaaaccaccagtcc	8	18	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17581332	T	T	17581332	3	4	116	1	0	0	0	0	1	0	0	0	7709	1348	47	2	529	2	IL17RA	22	17581332	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	112447	17581332	33723234	2012	111008											
CECR2	27443	broad.mit.edu	37	chr22	17983998	17983998	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaacggcagctctacaagCtcctcagtgaggacttcctg	11	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17983998	G	G	17983998	3	3	116	1	0	0	0	0	1	0	0	0	3236	797	28	4	718	4	CECR2	22	17983998	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	402666	17983998	33320568	2013	111009											
DGCR2	9993	broad.mit.edu	37	chr22	19035861	19035861	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcgatgctccataaactctCctgagtcctcaccactgagg	8	15	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19035861	A	A	19035861	1	1	116	0	1	0	0	0	0	0	0	0	4501	870	30	3		3	DGCR2	22	19035861	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1051863	19035861	32268705	2014	111010											
SEPT5	5413	broad.mit.edu	37	chr22	19708337	19708337	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccatgtataccagttccCtgagtgtgactcggacgagg	12	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19708337	T	T	19708337	3	4	116	1	0	0	0	0	1	0	0	0	14180	681	24	4	692	4	SEPT5	22	19708337	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	672476	19708337	31596229	2015	111011											
PI4KA	5297	broad.mit.edu	37	chr22	21098845	21098845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgttcattttccactaGgaagcggccaacaggcctca	9	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21098845	T	T	21098845	1	4	116	0	1	0	0	0	0	0	0	0	11968	1015	35	2		2	PI4KA	22	21098845	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1390508	21098845	30205721	2016	111012											
BCR	613	broad.mit.edu	37	chr22	23606096	23606096	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcttttgtgacagggacGgcttgttgtgggcacttctc	13	9	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23606096	A	A	23606096	1	1	116	0	1	0	0	0	0	0	0	0	1393	1131	39	4		4	BCR	22	23606096	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2507251	23606096	27698470	2017	111013											
BCR	613	broad.mit.edu	37	chr22	23615088	23615088	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcatgcagtgaatgtcCtggacttaaagtgttcctgt	10	9	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23615088	G	G	23615088	1	3	116	0	1	0	0	0	0	0	0	0	1393	696	24	4		4	BCR	22	23615088	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	8992	23615088	27689478	2018	111014											
IGLL1	3543	broad.mit.edu	37	chr22	23915735	23915735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagctcctcagaggacggCgggaacagagtgaccgaggg	18	9	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23915735	A	A	23915735	2	1	116	1	0	0	0	0	0	0	0	1	7663	768	27	3		3	IGLL1	22	23915735	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	300647	23915735	27388831	2019	111015											
CABIN1	23523	broad.mit.edu	37	chr22	24455567	24455567	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcctgggttctggacccCaccacccacttattttagct	9	14	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24455567	T	T	24455567	1	4	116	0	1	0	0	0	0	0	0	0	2554	609	21	4		4	CABIN1	22	24455567	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	539832	24455567	26848999	2020	111016											
SGSM1	129049	broad.mit.edu	37	chr22	25294099	25294099	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgggcctctcagagcactCagagcccagtctgagcacag	11	15	3	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25294099	T	T	25294099	3	4	116	1	0	0	0	0	1	0	0	0	14335	838	29	4	2426	4	SGSM1	22	25294099	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	838532	25294099	26010467	2021	111017											
ADRBK2	157	broad.mit.edu	37	chr22	26074883	26074883	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctcttgtcagcacaggaGtaagtattcaatttccagca	8	9	3	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26074883	C	C	26074883	5	2	116	1	0	0	0	0	0	0	1	0	344	1043	36	4	782	4	ADRBK2	22	26074883	Splice_Site	SNP	G	TCGA-44-3918-01A-01D-1105-08	780784	26074883	25229683	2022	111018											
MYO18B	84700	broad.mit.edu	37	chr22	26400821	26400821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccgcatcctcagccccaGgtaagagtatctccttgctg	9	15	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26400821	T	T	26400821	3	4	116	1	0	0	0	0	1	0	0	0	10160	1014	35	2	6632	2	MYO18B	22	26400821	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	325938	26400821	24903745	2023	111019											
HSCB	150274	broad.mit.edu	37	chr22	29140054	29140054	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatgtgattatcagggactGagctggaaaatcagctgtgt	12	5	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29140054	C	C	29140054	1	2	116	0	1	0	0	0	0	0	0	0	7441	1305	45	4		4	HSCB	22	29140054	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2739233	29140054	22164512	2024	111020											
ASCC2	84164	broad.mit.edu	37	chr22	30202159	30202159	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcctgtctcacctctgacCtagtcaagctgggccctgtc	9	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30202159	G	G	30202159	1	3	116	0	1	0	0	0	0	0	0	0	1036	696	24	4		4	ASCC2	22	30202159	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1062105	30202159	21102407	2025	111021											
TCN2	6948	broad.mit.edu	37	chr22	31018994	31018994	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaggcccctacttaacCtccgtgatggggaaagcggc	12	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31018994	G	G	31018994	2	3	116	1	0	0	0	0	0	0	0	1	15829	668	24	4		4	TCN2	22	31018994	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	816835	31018994	20285572	2026	111022											
SLC5A4	6527	broad.mit.edu	37	chr22	32614536	32614536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaataaagaccaccacagCcaggaggaggatggcgttga	14	8	0	3	rs148281524	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32614536	A	A	32614536	3	1	116	1	0	0	0	0	1	0	0	0	14781	739	26	3	38	3	SLC5A4	22	32614536	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1595542	32614536	18690030	2027	111023											
BPIL2	254240	broad.mit.edu	37	chr22	32810311	32810311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaggggctgacttccccctCcactgtctgcttatcaggtt	9	14	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32810311	A	A	32810311	3	1	116	1	0	0	0	0	1	0	0	0	1501	856	30	3	24	3	BPIL2	22	32810311	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	195775	32810311	18494255	2028	111024											
SYN3	8224	broad.mit.edu	37	chr22	32909928	32909928	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcatcataaggttatgaaGaccagaaaccaggcattcca	7	9	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32909928	T	T	32909928	1	4	116	0	1	0	0	0	0	0	0	0	15561	957	33	3		3	SYN3	22	32909928	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	99617	32909928	18394638	2029	111025											
TOM1	10043	broad.mit.edu	37	chr22	35718093	35718093	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgaaagtcacctcccctcAgacccagcaggactcccagc	7	18	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35718093	T	T	35718093	1	4	116	0	1	0	0	0	0	0	0	0	16474	203	7	5		5	TOM1	22	35718093	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	2808165	35718093	15586473	2030	111026											
TOM1	10043	broad.mit.edu	37	chr22	35743297	35743297	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgttaaggctgctttgGgggtggcttgttaccccctt	14	9	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35743297	T	T	35743297	1	4	116	0	1	0	0	0	0	0	0	0	16474	1247	43	2		2	TOM1	22	35743297	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	25204	35743297	15561269	2031	111027											
RBM9	23543	broad.mit.edu	37	chr22	36206048	36206048	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgttgtcggctcctggtTaccctaaaacaaacaacaag	8	10	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36206048	C	C	36206048	3	2	116	1	0	0	0	0	1	0	0	0	13255	1754	61	5	1172	5	RBM9	22	36206048	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	462751	36206048	15098518	2032	111028											
APOL4	80832	broad.mit.edu	37	chr22	36591550	36591551	+	Intron	INS	-	G	G													ataaatggcattgagtataaINSggtggttcggtgttaatcct							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36591551	G	G	36591550	6	5	116	0	1	1	1	0	0	0	0	0	810	87	3	0		0	APOL4	22	36591550	Intron	INS	-	TCGA-44-3918-01A-01D-1105-08	385502	36591550	14713016	2033	111029											
MYH9	4627	broad.mit.edu	37	chr22	36737396	36737396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattcagccccaggtgggCacacactacgtcacccacct	8	16	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36737396	A	A	36737396	1	1	116	0	1	0	0	0	0	0	0	0	10136	725	25	3		3	MYH9	22	36737396	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	145846	36737396	14567170	2034	111030											
TXN2	25828	broad.mit.edu	37	chr22	36876547	36876547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagcatagaacatggcCgtgggacacagcaggcattc	13	10	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36876547	A	A	36876547	1	1	116	0	1	0	0	0	0	0	0	0	16917	667	23	1		1	TXN2	22	36876547	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	139151	36876547	14428019	2035	111031											
ELFN2	114794	broad.mit.edu	37	chr22	37770562	37770562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccttcttgttcttgaggGtcatgacgtcggagaagtag	12	8	4	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37770562	T	T	37770562	3	4	116	1	0	0	0	0	1	0	0	0	5100	1261	44	3	1453	3	ELFN2	22	37770562	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	894015	37770562	13534004	2036	111032											
CSNK1E	1454	broad.mit.edu	37	chr22	38690126	38690126	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagctcacctgtgaggctgGgatccgggagacctcttgcc	14	13	2	2	rs137966537	byFrequency	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38690126	A	A	38690126	3	1	116	1	0	0	0	0	1	0	0	0	3987	1232	43	4	51	4	CSNK1E	22	38690126	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	919564	38690126	12614440	2037	111033											
FAM83F	113828	broad.mit.edu	37	chr22	40415783	40415783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtctagtgaagacaggagCctgcaggcagggtccataca	14	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40415783	A	A	40415783	1	1	116	0	1	0	0	0	0	0	0	0	5691	754	26	3		3	FAM83F	22	40415783	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1725657	40415783	10888783	2038	111034											
SGSM3	27352	broad.mit.edu	37	chr22	40801211	40801211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcatgggtagcatcgggGtgccccgcctgcgcagggtg	17	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40801211	T	T	40801211	3	4	116	1	0	0	0	0	1	0	0	0	14337	1261	44	3	563	3	SGSM3	22	40801211	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	385428	40801211	10503355	2039	111035											
NFAM1	150372	broad.mit.edu	37	chr22	42782978	42782978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagaagccaggcttggtgCcccagcgcctgtgtacctgg	14	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42782978	A	A	42782978	1	1	116	0	1	0	0	0	0	0	0	0	10453	754	26	3		3	NFAM1	22	42782978	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1981767	42782978	8521588	2040	111036											
SCUBE1	80274	broad.mit.edu	37	chr22	43603622	43603622	+	Intron	DEL	G	-	-													tgagttgctggtagtcctctGggcagcgggtcagcaggggg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43603622	-	-	43603622	6	5	116	0	1	1	0	1	0	0	0	0	14057	1363	47	0		0	SCUBE1	22	43603622	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	820644	43603622	7700944	2041	111037											
PNPLA5	150379	broad.mit.edu	37	chr22	44279923	44279923	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcattttgcagaggagatCacagaggctctgagtcatgc	11	9	4	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44279923	G	G	44279923	1	3	116	0	1	0	0	0	0	0	0	0	12263	841	29	4		4	PNPLA5	22	44279923	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	676301	44279923	7024643	2042	111038											
SAMM50	25813	broad.mit.edu	37	chr22	44368118	44368118	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taatatttttttatttaggtGatgacgcacttccaaatggg	8	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44368118	T	T	44368118	3	4	116	1	0	0	0	0	1	0	0	0	13940	1290	45	3	343	3	SAMM50	22	44368118	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	88195	44368118	6936448	2043	111039											
PHF21B	112885	broad.mit.edu	37	chr22	45309812	45309812	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgccgtgctctcgggctGcgtctgcacttgaggctgaa	13	13	3	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45309812	A	A	45309812	4	1	116	1	0	0	0	0	0	1	0	0	11929	1328	46	4	910	4	PHF21B	22	45309812	Nonsense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	941694	45309812	5994754	2044	111040											
IL17REL	400935	broad.mit.edu	37	chr22	50436080	50436080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaggatgttctgtgctgCgtccacattgcgtaggcctc	11	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50436080	A	A	50436080	1	1	116	0	1	0	0	0	0	0	0	0	7714	783	27	3		3	IL17REL	22	50436080	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	5126268	50436080	868486	2045	111041											
TTLL8	164714	broad.mit.edu	37	chr22	50479677	50479677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttctggattttgaagatgCacaagacaatgctactcccc	7	12	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50479677	T	T	50479677	3	4	116	1	0	0	0	0	1	0	0	0	16859	710	25	4	1671	4	TTLL8	22	50479677	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	43597	50479677	824889	2046	111042											
XG	7499	broad.mit.edu	37	chrX	2688516	2688516	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttgcaggaggaggggagcAgcatgaggtgaggaacaagg	20	5	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2688516	T	T	2688516	1	4	116	0	1	0	0	0	0	0	0	0	17554	203	7	5		5	XG	23	2688516	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08		2688516	152582044	2047	111043											
XG	7499	broad.mit.edu	37	chrX	2729347	2729347	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagccatgtttttttctcgGatgagcttgctttttctcca	8	10	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2729347	A	A	2729347	1	1	116	0	1	0	0	0	0	0	0	0	17554	1189	41	4		4	XG	23	2729347	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	40831	2729347	152541213	2048	111044											
MXRA5	25878	broad.mit.edu	37	chrX	3229472	3229472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccactttcaggtcaccccCgtagaagactttgtggtcgt	10	12	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3229472	A	A	3229472	3	1	116	1	0	0	0	0	1	0	0	0	10097	652	23	1	1718	1	MXRA5	23	3229472	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	500125	3229472	152041088	2049	111045											
MXRA5	25878	broad.mit.edu	37	chrX	3261795	3261795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggcacaaggatgcgggCaggccagcgccactcgcgga	16	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3261795	A	A	3261795	3	1	116	1	0	0	0	0	1	0	0	0	10097	710	25	3	8430	3	MXRA5	23	3261795	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	32323	3261795	152008765	2050	111046											
PNPLA4	8228	broad.mit.edu	37	chrX	7870224	7870224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcacacgtcaacaacaCatcctgcacaaagaaaagca	6	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7870224	A	A	7870224	1	1	116	0	1	0	0	0	0	0	0	0	12262	493	17	3		3	PNPLA4	23	7870224	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4608429	7870224	147400336	2051	111047											
SHROOM2	357	broad.mit.edu	37	chrX	9862978	9862978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgtgttctcagaggcgGctgcggcacagcactttacg	13	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9862978	T	T	9862978	3	4	116	1	0	0	0	0	1	0	0	0	14407	1203	42	3	1044	3	SHROOM2	23	9862978	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	1992754	9862978	145407582	2052	111048											
WWC3	55841	broad.mit.edu	37	chrX	10078060	10078060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcacagggcgccacggagaGgtgggtcagcggggacacga	19	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10078060	T	T	10078060	3	4	116	1	0	0	0	0	1	0	0	0	17540	1014	35	2	1004	2	WWC3	23	10078060	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	215082	10078060	145192500	2053	111049											
WWC3	55841	broad.mit.edu	37	chrX	10096092	10096092	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgcagctgcgctggcattCcgtgcaggtgttcaccagct	13	12	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10096092	T	T	10096092	3	4	116	1	0	0	0	0	1	0	0	0	17540	855	30	4	2229	4	WWC3	23	10096092	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	18032	10096092	145174468	2054	111050											
WWC3	55841	broad.mit.edu	37	chrX	10098192	10098192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacataggagattgtccggaGcccctcaccccaaatatttt	7	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10098192	T	T	10098192	1	4	116	0	1	0	0	0	0	0	0	0	17540	986	34	3		3	WWC3	23	10098192	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2100	10098192	145172368	2055	111051											
FRMPD4	9758	broad.mit.edu	37	chrX	12704383	12704383	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtacaacatgcaggacactGtgagccattgtagcagcatc	11	10	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12704383	A	A	12704383	1	1	116	0	1	0	0	0	0	0	0	0	6119	1392	48	4		4	FRMPD4	23	12704383	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2606191	12704383	142566177	2056	111052											
PIGA	5277	broad.mit.edu	37	chrX	15339900	15339900	+	Intron	DEL	G	-	-													tacccggtcatatacctggaGggagagaagccaagtgtgag							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15339900	-	-	15339900	6	5	116	0	1	1	0	1	0	0	0	0	11979	1015	35	0		0	PIGA	23	15339900	Intron	DEL	G	TCGA-44-3918-01A-01D-1105-08	2635517	15339900	139930660	2057	111053											
BMX	660	broad.mit.edu	37	chrX	15509128	15509128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaccccctttgggctggGgctggtttgcccccaattgc	12	13	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15509128	T	T	15509128	1	4	116	0	1	0	0	0	0	0	0	0	1479	1247	43	2		2	BMX	23	15509128	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	169228	15509128	139761432	2058	111054											
SCML2	10389	broad.mit.edu	37	chrX	18275192	18275192	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcagtaacctcagagagaTgagaaatacaacactaatta	7	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18275192	A	A	18275192	1	1	116	0	1	0	0	0	0	0	0	0	14023	1479	51	5		5	SCML2	23	18275192	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	2766064	18275192	136995368	2059	111055											
ZNF645	158506	broad.mit.edu	37	chrX	22290996	22290996	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttgataatgggttactaGgcactcatagttctggatcg	11	7	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22290996	T	T	22290996	1	4	116	0	1	0	0	0	0	0	0	0	18188	1015	35	2		2	ZNF645	23	22290996	5'Flank	SNP	G	TCGA-44-3918-01A-01D-1105-08	4015804	22290996	132979564	2060	111056											
DMD	1756	broad.mit.edu	37	chrX	31514907	31514907	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttaaaaatgtcctacccTatgtacatcgttctgcttct	6	11	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31514907	C	C	31514907	3	2	116	1	0	0	0	0	1	0	0	0	4620	1521	53	5	2718	5	DMD	23	31514907	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	9223911	31514907	123755653	2061	111057											
FAM47A	158724	broad.mit.edu	37	chrX	34148158	34148158	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccaggcatttcatagccCttgcttagaatgaaatcctt	7	10	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34148158	G	G	34148158	3	3	116	1	0	0	0	0	1	0	0	0	5620	680	24	4	141	4	FAM47A	23	34148158	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2633251	34148158	121122402	2062	111058											
SSX5	6758	broad.mit.edu	37	chrX	48047041	48047041	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatctgcaaggatgtgggaGatgagccaaaggttcactta	12	7	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48047041	T	T	48047041	1	4	116	0	1	0	0	0	0	0	0	0	15326	957	33	3		3	SSX5	23	48047041	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	13898883	48047041	107223519	2063	111059											
AKAP4	8852	broad.mit.edu	37	chrX	49958170	49958170	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagacaaagtctgagtcagtCatcaggaccccagtaatatt	9	9	4	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49958170	A	A	49958170	3	1	116	1	0	0	0	0	1	0	0	0	453	826	29	3	1378	3	AKAP4	23	49958170	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1911129	49958170	105312390	2064	111060											
CCNB3	85417	broad.mit.edu	37	chrX	50051724	50051724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtgctcaaatcatgaGgaggtgtccttactggaaaa	10	6	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50051724	T	T	50051724	3	4	116	1	0	0	0	0	1	0	0	0	2944	991	35	2	569	2	CCNB3	23	50051724	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	93554	50051724	105218836	2065	111061											
FAM123B	139285	broad.mit.edu	37	chrX	63411430	63411430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcacgtgcctcctgggcCtcaagctgctcccgccgaag	13	17	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63411430	A	A	63411430	3	1	116	1	0	0	0	0	1	0	0	0	5469	680	24	2	1674	2	FAM123B	23	63411430	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	13359706	63411430	91859130	2066	111062											
ZC4H2	55906	broad.mit.edu	37	chrX	64138864	64138864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccagaactagccttccaCggcccttccatgggaggata	10	14	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64138864	A	A	64138864	1	1	116	0	1	0	0	0	0	0	0	0	17704	551	19	3		3	ZC4H2	23	64138864	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	727434	64138864	91131696	2067	111063											
HEPH	9843	broad.mit.edu	37	chrX	65423424	65423424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgagaaggacaggtaaGgcttcataaatggagagatt	13	4	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65423424	T	T	65423424	1	4	116	0	1	0	0	0	0	0	0	0	7121	1015	35	2		2	HEPH	23	65423424	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1284560	65423424	89847136	2068	111064											
KIF4A	24137	broad.mit.edu	37	chrX	69521723	69521723	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttgaagtataaatcataAgggaattttctctttcttgc	6	6	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69521723	T	T	69521723	1	4	116	0	1	0	0	0	0	0	0	0	8373	87	3	5		5	KIF4A	23	69521723	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	4098299	69521723	85748837	2069	111065											
SLC7A3	84889	broad.mit.edu	37	chrX	70148669	70148669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctggcccaacccccacCattataccctgctctttgcc	4	21	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70148669	A	A	70148669	1	1	116	0	1	0	0	0	0	0	0	0	14812	609	21	2		2	SLC7A3	23	70148669	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	626946	70148669	85121891	2070	111066											
IL2RG	3561	broad.mit.edu	37	chrX	70328051	70328051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcctctctgcccccacCcccacactctgtctgtcttg	4	22	5	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70328051	A	A	70328051	1	1	116	0	1	0	0	0	0	0	0	0	7758	638	22	2		2	IL2RG	23	70328051	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	179382	70328051	84942509	2071	111067											
TAF1	6872	broad.mit.edu	37	chrX	70597538	70597538	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaagaggaagaagaagcAccgtgagctgatacaggaag	15	5	0	6			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70597538	C	C	70597538	3	2	116	1	0	0	0	0	1	0	0	0	15632	159	6	5	882	5	TAF1	23	70597538	Missense_Mutation	SNP	A	TCGA-44-3918-01A-01D-1105-08	269487	70597538	84673022	2072	111068											
ATRX	546	broad.mit.edu	37	chrX	76931695	76931695	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtgtgttataatcttttTaaagtccttacagatggaat	9	4	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76931695	C	C	76931695	1	2	116	0	1	0	0	0	0	0	0	0	1212	1769	61	5		5	ATRX	23	76931695	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	6334157	76931695	78338865	2073	111069											
ITM2A	9452	broad.mit.edu	37	chrX	78622739	78622739	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcgggctgcgcggtaagGcgctgctggaatcagcgtcc	15	12	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78622739	T	T	78622739	1	4	116	0	1	0	0	0	0	0	0	0	7982	1218	42	3		3	ITM2A	23	78622739	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	1691044	78622739	76647821	2074	111070											
TBX22	50945	broad.mit.edu	37	chrX	79277767	79277767	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcccttcaccccctccagGgatggctctgagctctcggg	10	16	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79277767	T	T	79277767	1	4	116	0	1	0	0	0	0	0	0	0	15780	1246	43	2		2	TBX22	23	79277767	5'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	655028	79277767	75992793	2075	111071											
FAM46D	169966	broad.mit.edu	37	chrX	79698195	79698195	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgaaagatcaactcataGggcaaggaattattgttaaa	9	4	2	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79698195	A	A	79698195	3	1	116	1	0	0	0	0	1	0	0	0	5619	1000	35	4	159	4	FAM46D	23	79698195	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	420428	79698195	75572365	2076	111072											
PCDH11X	27328	broad.mit.edu	37	chrX	91134030	91134030	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacctactactttcaagcccGacagccctgatttggcccga	7	16	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91134030	T	T	91134030	3	4	116	1	0	0	0	0	1	0	0	0	11602	1058	37	3	2797	3	PCDH11X	23	91134030	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	11435835	91134030	64136530	2077	111073											
PCDH11X	27328	broad.mit.edu	37	chrX	91238367	91238368	+	Intron	DNP	TG	CT	CT													ttggtggtctcagtattggcTgagcctgagcttgtaaattc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	91238368	CT	CT	91238367	1	2	116	0	1	0	0	0	0	0	0	0	11602	1595	55	5		5	PCDH11X	23	91238367	Intron	DNP	TG	TCGA-44-3918-01A-01D-1105-08	104337	91238367	64032193	2078	111074											
NAP1L3	4675	broad.mit.edu	37	chrX	92928086	92928086	+	Missense_Mutation	SNP	C	G	G													ccctcttctttctatacaagCggctgcggctgctagtgctg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92928086	G	G	92928086	3	3	116	1	0	0	0	0	1	0	0	0	10252	768	27	4	1306	4	NAP1L3	23	92928086	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1689719	92928086	62342474	2079	111075	483	2									
NAP1L3	4675	broad.mit.edu	37	chrX	92928088	92928088	+	Missense_Mutation	SNP	G	T	T													ctcttctttctatacaagcgGctgcggctgctagtgctgcc							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92928088	T	T	92928088	3	4	116	1	0	0	0	0	1	0	0	0	10252	1194	42	3	1308	3	NAP1L3	23	92928088	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2	92928088	62342472	2080	111076	483	2									
PCDH19	57526	broad.mit.edu	37	chrX	99551693	99551693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgaaagtccgtttggtgGggccgcagtcgtcataagcc	14	10	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99551693	T	T	99551693	3	4	116	1	0	0	0	0	1	0	0	0	11608	1232	43	2	421	2	PCDH19	23	99551693	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	6623605	99551693	55718867	2081	111077											
NXF2B	728343	broad.mit.edu	37	chrX	101623784	101623784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaatgattgacaaatataCatatctgcaggaaggcaggg	11	5	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101623784	A	A	101623784	3	1	116	1	0	0	0	0	1	0	0	0	10879	478	17	3	3331	3	NXF2B	23	101623784	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	2072091	101623784	53646776	2082	111078											
NXF3	56000	broad.mit.edu	37	chrX	102333478	102333479	+	Intron	DNP	CA	TT	TT													gggtgctcccacccacaacaCagcactaacctggaactgct							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	102333479	TT	TT	102333478	1	4	116	0	1	0	0	0	0	0	0	0	10880	493	17	4		4	NXF3	23	102333478	Intron	DNP	CA	TCGA-44-3918-01A-01D-1105-08	709694	102333478	52937082	2083	111079											
NXF3	56000	broad.mit.edu	37	chrX	102337630	102337630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatatcttagaccaattagcCtcctagctaatctcttccac	4	13	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102337630	A	A	102337630	1	1	116	0	1	0	0	0	0	0	0	0	10880	696	24	2		2	NXF3	23	102337630	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	4152	102337630	52932930	2084	111080											
RAB9B	51209	broad.mit.edu	37	chrX	103080189	103080189	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaatgctccagctgttcctCtacagccagcacctgcctga	8	16	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103080189	G	G	103080189	3	3	116	1	0	0	0	0	1	0	0	0	13067	922	32	4	83	4	RAB9B	23	103080189	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	742559	103080189	52190371	2085	111081											
CXorf41	139212	broad.mit.edu	37	chrX	106486460	106486460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccaaagcattctatatcCcagagactgaaactcttgaa	7	10	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106486460	A	A	106486460	3	1	116	1	0	0	0	0	1	0	0	0	4143	623	22	2	599	2	CXorf41	23	106486460	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	3406271	106486460	48784100	2086	111082											
COL4A6	1288	broad.mit.edu	37	chrX	107403709	107403709	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacccaggtcctggttgtgGgctttctcttgcccctccac	9	16	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107403709	T	T	107403709	2	4	116	1	0	0	0	0	0	0	0	1	3727	1219	43	2		2	COL4A6	23	107403709	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	917249	107403709	47866851	2087	111083											
COL4A6	1288	broad.mit.edu	37	chrX	107407980	107407980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcatggtaggggtggtaGgggtggaggataggcagggg	24	4	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107407980	T	T	107407980	1	4	116	0	1	0	0	0	0	0	0	0	3727	1015	35	2		2	COL4A6	23	107407980	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	4271	107407980	47862580	2088	111084											
GUCY2F	2986	broad.mit.edu	37	chrX	108628408	108628408	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccatctctctattaggtaCtcacgtaagcctgtagattc	6	11	3	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108628408	G	G	108628408	1	3	116	0	1	0	0	0	0	0	0	0	6963	580	20	4		4	GUCY2F	23	108628408	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	1220428	108628408	46642152	2089	111085											
GUCY2F	2986	broad.mit.edu	37	chrX	108652141	108652141	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaatgatcacaacaatcTgaggaaaataaaatatccca	6	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108652141	A	A	108652141	1	1	116	0	1	0	0	0	0	0	0	0	6963	1595	55	5		5	GUCY2F	23	108652141	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	23733	108652141	46618419	2090	111086											
ZCCHC16	340595	broad.mit.edu	37	chrX	111624967	111624967	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgctatattaaaggaaaaGcaggagaaagaaatacagac	9	4	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111624967	C	C	111624967	1	2	116	0	1	0	0	0	0	0	0	0	17710	986	34	4		4	ZCCHC16	23	111624967	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	2972826	111624967	43645593	2091	111087											
AMOT	154796	broad.mit.edu	37	chrX	112024186	112024186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtcagggtggatgagtGggagagcaagcctgatccag	17	8	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112024186	T	T	112024186	3	4	116	1	0	0	0	0	1	0	0	0	582	1348	47	2	865	2	AMOT	23	112024186	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	399219	112024186	43246374	2092	111088											
RHOXF2B	727940	broad.mit.edu	37	chrX	119211112	119211112	+	Frame_Shift_Del	DEL	C	-	-													cgccatctttttcttctccgCcgccatctttttcttctccg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119211112	-	-	119211112	7	5	116	1	0	1	0	1	0	0	0	0	13458	739	26	0	657	0	RHOXF2B	23	119211112	Frame_Shift_Del	DEL	C	TCGA-44-3918-01A-01D-1105-08	7186926	119211112	36059448	2093	111089											
ODZ1	10178	broad.mit.edu	37	chrX	123516528	123516528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttttactaacctttccagGatcccactcttgagtttttg	5	11	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123516528	T	T	123516528	3	4	116	1	0	0	0	0	1	0	0	0	10929	1174	41	3	774	3	ODZ1	23	123516528	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	4305416	123516528	31754032	2094	111090											
ODZ1	10178	broad.mit.edu	37	chrX	123538827	123538827	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaacaaacaaacaaacAaacaaacaaaacacctataa	0	10	0	0	rs72264611		TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123538827	T	T	123538827	1	4	116	0	1	0	0	0	0	0	0	0	10929	145	5	5		5	ODZ1	23	123538827	Intron	SNP	A	TCGA-44-3918-01A-01D-1105-08	22299	123538827	31731733	2095	111091											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299720	125299720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagcccggctgggcccCgcgctcctacctcccggccc	12	22	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299720	A	A	125299720	3	1	116	1	0	0	0	0	1	0	0	0	4298	652	23	1	1207	1	DCAF12L2	23	125299720	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1760893	125299720	29970840	2096	111092											
SASH3	54440	broad.mit.edu	37	chrX	128924737	128924737	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaccagggcaaggactgtCactctcatttttacaaaagg	9	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128924737	A	A	128924737	1	1	116	0	1	0	0	0	0	0	0	0	13961	841	29	3		3	SASH3	23	128924737	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	3625017	128924737	26345823	2097	111093											
ELF4	2000	broad.mit.edu	37	chrX	129208743	129208743	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagctatggagaagacagGgatgtgattcaagacccacc	11	10	1	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129208743	A	A	129208743	1	1	116	0	1	0	0	0	0	0	0	0	5098	1247	43	4		4	ELF4	23	129208743	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	284006	129208743	26061817	2098	111094											
ARHGAP36	158763	broad.mit.edu	37	chrX	130222674	130222674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaaggagcgggtaaccCtcccattccggagcaagacc	13	12	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130222674	A	A	130222674	3	1	116	1	0	0	0	0	1	0	0	0	885	681	24	2	1601	2	ARHGAP36	23	130222674	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1013931	130222674	25047886	2099	111095											
TFDP3	51270	broad.mit.edu	37	chrX	132351801	132351801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaaggcatcgtaggtgcGccgttttatgtttttcacgt	11	7	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132351801	T	T	132351801	3	4	116	1	0	0	0	0	1	0	0	0	15922	1087	38	3	734	3	TFDP3	23	132351801	Missense_Mutation	SNP	G	TCGA-44-3918-01A-01D-1105-08	2129127	132351801	22918759	2100	111096											
GPC3	2719	broad.mit.edu	37	chrX	132730525	132730525	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatcaccagagcctccaaTgcactcatcttcatcatcac	3	17	6	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132730525	A	A	132730525	3	1	116	1	0	0	0	0	1	0	0	0	6664	1464	51	5	234	5	GPC3	23	132730525	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	378724	132730525	22540035	2101	111097											
FAM122C	159091	broad.mit.edu	37	chrX	133941868	133941868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccttgttcctggtgtccGgagatcccaccctcaacctt	7	17	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133941868	T	T	133941868	1	4	116	0	1	0	0	0	0	0	0	0	5467	1131	39	1		1	FAM122C	23	133941868	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	1211343	133941868	21328692	2102	111098											
CXorf48	54967	broad.mit.edu	37	chrX	134303589	134303589	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactttttgtccaacttttaGaggcacgttgccagtcacaa	7	10	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134303589	A	A	134303589	2	1	116	1	0	0	0	0	0	0	0	1	4144	933	33	4		4	CXorf48	23	134303589	Silent	SNP	G	TCGA-44-3918-01A-01D-1105-08	361721	134303589	20966971	2103	111099											
MAGEC3	139081	broad.mit.edu	37	chrX	140984513	140984513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtgtgacagaggacttGgtagatgcacaggattccat	13	8	0	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140984513	T	T	140984513	1	4	116	0	1	0	0	0	0	0	0	0	9274	1339	47	2		2	MAGEC3	23	140984513	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6680924	140984513	14286047	2104	111100											
MAGEC2	51438	broad.mit.edu	37	chrX	141291520	141291520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaccctgtggaggactaCtgggaatgctctcggtaaga	15	8	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141291520	A	A	141291520	3	1	116	1	0	0	0	0	1	0	0	0	9273	565	20	3	871	3	MAGEC2	23	141291520	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	307007	141291520	13979040	2105	111101											
SPANXN2	494119	broad.mit.edu	37	chrX	142795594	142795594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaccctgttcggtgcctcCtgcatctgataagaaaacag	9	11	1	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142795594	A	A	142795594	3	1	116	1	0	0	0	0	1	0	0	0	15107	680	24	2	462	2	SPANXN2	23	142795594	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	1504074	142795594	12474966	2106	111102											
SPANXN1	494118	broad.mit.edu	37	chrX	144337437	144337437	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagacttacctgaaggcctaGactcagctgaaggatcttca	9	10	3	4			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144337437	T	T	144337437	1	4	116	0	1	0	0	0	0	0	0	0	15106	957	33	3		3	SPANXN1	23	144337437	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	1541843	144337437	10933123	2107	111103											
CXorf1	9142	broad.mit.edu	37	chrX	144909468	144909468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcaaaatggttccagcCtacagaatgcagtctcccag	8	13	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144909468	A	A	144909468	2	1	116	1	0	0	0	0	0	0	0	1	4133	668	24	2		2	CXorf1	23	144909468	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	572031	144909468	10361092	2108	111104											
AFF2	2334	broad.mit.edu	37	chrX	148048661	148048661	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtagtgaatggggggtgGgggtagcatggcttttctag	20	3	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148048661	A	A	148048661	1	1	116	0	1	0	0	0	0	0	0	0	357	1247	43	4		4	AFF2	23	148048661	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	3139193	148048661	7221899	2109	111105											
AFF2	2334	broad.mit.edu	37	chrX	148054888	148054888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagtgtctccagacattGccaaatgttccctgtgggaa	10	9	1	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148054888	T	T	148054888	1	4	116	0	1	0	0	0	0	0	0	0	357	1334	46	3		3	AFF2	23	148054888	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	6227	148054888	7215672	2110	111106											
HSFX2	100130086	broad.mit.edu	37	chrX	148842431	148842431	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttacttctgttttggaatCttgggcaggtgagcactatg	11	8	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148842431	A	A	148842431	1	1	116	0	1	0	0	0	0	0	0	0	7468	928	32	3		3	HSFX2	23	148842431	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	787543	148842431	6428129	2111	111107											
PASD1	139135	broad.mit.edu	37	chrX	150842674	150842674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaggtatgggacagccccCtccttttccttccagcgcag	9	15	1	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150842674	A	A	150842674	1	1	116	0	1	0	0	0	0	0	0	0	11565	696	24	2		2	PASD1	23	150842674	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	2000243	150842674	4427886	2112	111108											
GABRQ	55879	broad.mit.edu	37	chrX	151820222	151820222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccgctaccgctaccagCaagtggtggtaggaaacgtg	13	11	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151820222	A	A	151820222	3	1	116	1	0	0	0	0	1	0	0	0	6235	711	25	3	1165	3	GABRQ	23	151820222	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	977548	151820222	3450338	2113	111109											
CSAG1	158511	broad.mit.edu	37	chrX	151904401	151904416	+	Intron	DEL	TAGATTTTCTTGCTAA	-	-													actggccctgttttgttgtgTagattttcttgctaatactg					rs143837299	by1000genomes	TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151904416	-	-	151904401	6	5	116	0	1	1	0	1	0	0	0	0	3958	1653	57	0		0	CSAG1	23	151904401	Intron	DEL	TAGATTTTCTTGCTAA	TCGA-44-3918-01A-01D-1105-08	84179	151904401	3366159	2114	111110											
ZNF185	7739	broad.mit.edu	37	chrX	152087479	152087479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagccaggaagccaagctGctgagggtggcagcctatga	15	9	0	2			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152087479	T	T	152087479	1	4	116	0	1	0	0	0	0	0	0	0	17878	1334	46	3		3	ZNF185	23	152087479	Intron	SNP	G	TCGA-44-3918-01A-01D-1105-08	183078	152087479	3183081	2115	111111											
BGN	633	broad.mit.edu	37	chrX	152771607	152771607	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggagaccaagggataccTttagaggctcagttcaagaa	12	7	2	3			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152771607	C	C	152771607	1	2	116	0	1	0	0	0	0	0	0	0	1424	1624	56	5		5	BGN	23	152771607	Intron	SNP	T	TCGA-44-3918-01A-01D-1105-08	684128	152771607	2498953	2116	111112											
ATP2B3	492	broad.mit.edu	37	chrX	152815041	152815042	+	Missense_Mutation	DNP	GG	TT	TT													gccatctgctccgacaagacGggcacgctcaccaccaaccg							TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	152815042	TT	TT	152815041	3	4	116	1	0	0	0	0	1	0	0	0	1145	1103	39	1	1459	1	ATP2B3	23	152815041	Missense_Mutation	DNP	GG	TCGA-44-3918-01A-01D-1105-08	43434	152815041	2455519	2117	111113											
DUSP9	1852	broad.mit.edu	37	chrX	152914893	152914893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattcggagggtgccacaCccccaccagtggggctgcgg	16	13	0	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152914893	A	A	152914893	3	1	116	1	0	0	0	0	1	0	0	0	4872	507	18	3	586	3	DUSP9	23	152914893	Missense_Mutation	SNP	C	TCGA-44-3918-01A-01D-1105-08	99852	152914893	2355667	2118	111114											
L1CAM	3897	broad.mit.edu	37	chrX	153135306	153135306	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacctctggttggggccTgccctggacttggcagtcca	15	12	1	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153135306	A	A	153135306	3	1	116	1	0	0	0	0	1	0	0	0	8660	1579	55	5	2778	5	L1CAM	23	153135306	Missense_Mutation	SNP	T	TCGA-44-3918-01A-01D-1105-08	220413	153135306	2135254	2119	111115											
HCFC1	3054	broad.mit.edu	37	chrX	153224149	153224149	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgccgaggaaggggggatCttctgggtggcagcggccgc	21	9	2	0			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153224149	T	T	153224149	2	4	116	1	0	0	0	0	0	0	0	1	7057	912	32	4		4	HCFC1	23	153224149	Silent	SNP	C	TCGA-44-3918-01A-01D-1105-08	88843	153224149	2046411	2120	111116											
OPN1MW	2652	broad.mit.edu	37	chrX	153496323	153496323	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaagggtgcagcgatggccCcacctggaatcatgtctctg	13	11	2	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153496323	G	G	153496323	1	3	116	0	1	0	0	0	0	0	0	0	10972	638	22	4		4	OPN1MW	23	153496323	Intron	SNP	C	TCGA-44-3918-01A-01D-1105-08	272174	153496323	1774237	2121	111117											
ATP6AP1	537	broad.mit.edu	37	chrX	153664270	153664270	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggggttgagggtgggacGgtgtccgtgttgttgctttc	21	5	0	1			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153664270	A	A	153664270	1	1	116	0	1	0	0	0	0	0	0	0	1169	1131	39	4		4	ATP6AP1	23	153664270	3'UTR	SNP	G	TCGA-44-3918-01A-01D-1105-08	167947	153664270	1606290	2122	111118											
PRDM16	63976	broad.mit.edu	37	chr1	3319367	3319367	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgcagaggagcccacgtTccgctgtgacgagtgtgacg	14	11	1	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3319367	C	C	3319367	3	2	117	1	0	0	0	0	1	0	0	0	12563	1783	62	5	711	5	PRDM16	1	3319367	Missense_Mutation	SNP	T	TCGA-44-3919-01A-02D-1105-08		3319367	245931254	1	111119											
CCDC27	148870	broad.mit.edu	37	chr1	3671781	3671781	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tagggtctgcccctccggggGaaagggggcatcagctagag	17	10	2	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3671781	C	C	3671781	1	2	117	0	1	0	0	0	0	0	0	0	2828	1189	41	4		4	CCDC27	1	3671781	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	352414	3671781	245578840	2	111120											
HIAT1	64645	broad.mit.edu	37	chr1	100533892	100533892	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatacttttcagaatagtttGgggaatatgaaataaataaa	7	2	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100533892	C	C	100533892	1	2	117	0	1	0	0	0	0	0	0	0	7164	1363	47	4		4	HIAT1	1	100533892	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	96862111	100533892	148716729	3	111121											
SLC6A17	388662	broad.mit.edu	37	chr1	110740027	110740027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgtgactgagggatgCcaactgctggaccctctgct	15	10	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110740027	A	A	110740027	1	1	117	0	1	0	0	0	0	0	0	0	14794	754	26	3		3	SLC6A17	1	110740027	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	10206135	110740027	138510594	4	111122											
SYCP1	6847	broad.mit.edu	37	chr1	115527500	115527500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcttttggtaaaaatttTacaaataatatttagtattt	4	2	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115527500	C	C	115527500	1	2	117	0	1	0	0	0	0	0	0	0	15550	1769	61	5		5	SYCP1	1	115527500	Intron	SNP	T	TCGA-44-3919-01A-02D-1105-08	4787473	115527500	133723121	5	111123											
NBPF10	100132406	broad.mit.edu	37	chr1	146217021	146217021	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggtttcatgggtagcataAggaagtggttaaaaaaagta	12	2	1	0	rs146388681	by1000genomes	TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146217021	G	G	146217021	1	3	117	0	1	0	0	0	0	0	0	0	10287	87	3	5		5	NBPF10	1	146217021	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	30689521	146217021	103033600	6	111124											
NR5A2	2494	broad.mit.edu	37	chr1	199997048	199997048	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttacacctattggtaagtagGagtttctctattgatcatct	7	7	3	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	199997048	A	A	199997048	1	1	117	0	1	0	0	0	0	0	0	0	10731	1189	41	4		4	NR5A2	1	199997048	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	53780027	199997048	49253573	7	111125											
KDM5B	10765	broad.mit.edu	37	chr1	202701171	202701171	+	Intron	DEL	A	-	-													cccaggcaggcaaccaggggAaaaaaaaaaaaaaacaactt							TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	202701171	-	-	202701171	6	5	117	0	1	1	0	1	0	0	0	0	8204	261	9	0		0	KDM5B	1	202701171	Intron	DEL	A	TCGA-44-3919-01A-02D-1105-08	2704123	202701171	46549450	8	111126											
SOS1	6654	broad.mit.edu	37	chr2	39237900	39237900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctctaatatagacattGttttattaagtaaaggagac	6	4	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39237900	T	T	39237900	1	4	117	0	1	0	0	0	0	0	0	0	15050	1392	48	3		3	SOS1	2	39237900	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08		39237900	203961473	9	111127											
PREPL	9581	broad.mit.edu	37	chr2	44571027	44571027	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcaactctgatacaatcaAtgaagggctggtctaactta	9	8	3	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44571027	G	G	44571027	3	3	117	1	0	0	0	0	1	0	0	0	12581	101	4	5	1754	5	PREPL	2	44571027	Missense_Mutation	SNP	A	TCGA-44-3919-01A-02D-1105-08	5333127	44571027	198628346	10	111128											
NRXN1	9378	broad.mit.edu	37	chr2	50847150	50847150	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaatgattctgatggcaaCgatatttacctctttgagac	9	7	2	3	rs113028018		TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50847150	T	T	50847150	1	4	117	0	1	0	0	0	0	0	0	0	10760	551	19	4		4	NRXN1	2	50847150	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	6276123	50847150	192352223	11	111129											
SPTBN1	6711	broad.mit.edu	37	chr2	54895769	54895769	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaattccagcatgcaagctCagaaccaacacattactctc	5	13	2	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54895769	G	G	54895769	1	3	117	0	1	0	0	0	0	0	0	0	15237	841	29	4		4	SPTBN1	2	54895769	3'UTR	SNP	C	TCGA-44-3919-01A-02D-1105-08	4048619	54895769	188303604	12	111130											
VRK2	7444	broad.mit.edu	37	chr2	58362214	58362214	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacatagagtgttttgttttCtagtcaaaataatcacaggg	8	6	3	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58362214	G	G	58362214	1	3	117	0	1	0	0	0	0	0	0	0	17347	928	32	4		4	VRK2	2	58362214	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	3466445	58362214	184837159	13	111131											
MYL1	4632	broad.mit.edu	37	chr2	211179575	211179575	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atacacgcctttgcaagttcCtagagatccttactattgaa	6	10	0	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211179575	G	G	211179575	1	3	117	0	1	0	0	0	0	0	0	0	10137	696	24	4		4	MYL1	2	211179575	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	152817361	211179575	32019798	14	111132											
UGT1A3	54659	broad.mit.edu	37	chr2	234638177	234638177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagctactacataatgaGgccctgatcaggcacctgaa	11	10	1	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234638177	T	T	234638177	3	4	117	1	0	0	0	0	1	0	0	0	17072	991	35	2	407	2	UGT1A3	2	234638177	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08	23458602	234638177	8561196	15	111133											
QARS	5859	broad.mit.edu	37	chr3	49133545	49133545	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaaggatgaccaccaaCccagaacaaggccagggagg	14	10	0	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49133545	G	G	49133545	1	3	117	0	1	0	0	0	0	0	0	0	12979	522	18	4		4	QARS	3	49133545	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08		49133545	148888885	16	111134											
CEP97	79598	broad.mit.edu	37	chr3	101476618	101476618	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctggaagacatacagacgGatgaggacaagttaaactgt	11	7	0	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101476618	A	A	101476618	3	1	117	1	0	0	0	0	1	0	0	0	3293	1174	41	4	1202	4	CEP97	3	101476618	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08	52343073	101476618	96545812	17	111135											
PAQR9	344838	broad.mit.edu	37	chr3	142681704	142681704	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtagtagctgatggacgCgtagtccaggtagaagaagg	16	7	0	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142681704	T	T	142681704	3	4	117	1	0	0	0	0	1	0	0	0	11536	768	27	4	662	4	PAQR9	3	142681704	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	41205086	142681704	55340726	18	111136											
ATP10D	57205	broad.mit.edu	37	chr4	47583959	47583959	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaactctccaggatcatctAatgtcctctctttgtagacc	5	13	4	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47583959	G	G	47583959	1	3	117	0	1	0	0	0	0	0	0	0	1122	377	13	5		5	ATP10D	4	47583959	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08		47583959	143570317	19	111137											
NFXL1	152518	broad.mit.edu	37	chr4	47886329	47886330	+	Intron	INS	-	T	T													gctatgtcaaaagttttttgINSttttttttttttaattgaaa					rs13152765		TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47886330	T	T	47886329	6	5	117	0	1	1	1	0	0	0	0	0	10483	1392	48	0		0	NFXL1	4	47886329	Intron	INS	-	TCGA-44-3919-01A-02D-1105-08	302370	47886329	143267947	20	111138											
FRYL	285527	broad.mit.edu	37	chr4	48636353	48636353	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttcttttcagcttgaacAgcaaattctgcaaagaggct	7	8	3	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48636353	C	C	48636353	2	2	117	1	0	0	0	0	0	0	0	1	6124	175	7	5		5	FRYL	4	48636353	Silent	SNP	A	TCGA-44-3919-01A-02D-1105-08	750024	48636353	142517923	21	111139											
MAML3	55534	broad.mit.edu	37	chr4	140641170	140641170	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagccactcaccattccaacCccctgcccagaggcaggttg	8	17	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140641170	G	G	140641170	2	3	117	1	0	0	0	0	0	0	0	1	9299	610	22	4		4	MAML3	4	140641170	Silent	SNP	C	TCGA-44-3919-01A-02D-1105-08	92004817	140641170	50513106	22	111140											
RGNEF	64283	broad.mit.edu	37	chr5	73163796	73163796	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaggagggagactgtgGgacaggtccatccattgtcc	15	9	0	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73163796	A	A	73163796	3	1	117	1	0	0	0	0	1	0	0	0	13391	1233	43	4	2318	4	RGNEF	5	73163796	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08		73163796	107751464	23	111141											
ARRDC3	57561	broad.mit.edu	37	chr5	90672639	90672639	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatacctctttctaacaattAcacagtaggtcagaatagaa	5	8	3	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90672639	G	G	90672639	1	3	117	0	1	0	0	0	0	0	0	0	988	406	14	5		5	ARRDC3	5	90672639	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	17508843	90672639	90242621	24	111142											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171765853	171765853	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggaccacaggtctctgCtggggagcctcttggagagg	18	9	2	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171765853	T	T	171765853	2	4	117	1	0	0	0	0	0	0	0	1	14370	796	28	4		4	SH3PXD2B	5	171765853	Silent	SNP	C	TCGA-44-3919-01A-02D-1105-08	81093214	171765853	9149407	25	111143											
RNF44	22838	broad.mit.edu	37	chr5	175959120	175959120	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctacggggaggtgtggaggtCgggacggcggctgctgggag	23	7	0	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175959120	T	T	175959120	3	4	117	1	0	0	0	0	1	0	0	0	13607	884	31	4	1152	4	RNF44	5	175959120	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	4193267	175959120	4956140	26	111144											
FLT4	2324	broad.mit.edu	37	chr5	180041241	180041241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacggagggaagcgtgtcccGtggtggatggggagacggag	22	6	0	1	rs55713910		TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180041241	A	A	180041241	1	1	117	0	1	0	0	0	0	0	0	0	6002	1160	40	4		4	FLT4	5	180041241	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	4082121	180041241	874019	27	111145											
SLC17A1	6568	broad.mit.edu	37	chr6	25812021	25812021	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggaaacattattcttGgagtgagtttgatgggtaaa	13	2	1	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25812021	A	A	25812021	1	1	117	0	1	0	0	0	0	0	0	0	14529	1363	47	4		4	SLC17A1	6	25812021	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08		25812021	145303046	28	111146											
FILIP1	27145	broad.mit.edu	37	chr6	76063272	76063272	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctctcccgctcctgctcCagcaggttggtgaagtcgtc	10	15	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76063272	T	T	76063272	2	4	117	1	0	0	0	0	0	0	0	1	5951	581	21	4		4	FILIP1	6	76063272	Silent	SNP	C	TCGA-44-3919-01A-02D-1105-08	50251251	76063272	95051795	29	111147											
ACAT2	39	broad.mit.edu	37	chr6	160198311	160198311	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttaataagcatggtagaaAttaagtcactcatattttac	7	5	2	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160198311	G	G	160198311	1	3	117	0	1	0	0	0	0	0	0	0	122	116	4	5		5	ACAT2	6	160198311	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	84135039	160198311	10916756	30	111148											
PCLO	27445	broad.mit.edu	37	chr7	82784439	82784468	+	In_Frame_Del	DEL	TGAGCCAGGCTGTTGAGATGGGGGCTTTGC	-	-													tgttgaggtgggggttttgtTgagccaggctgttgagatgg					rs6972461	by1000genomes	TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82784468	-	-	82784439	7	5	117	1	0	1	0	1	0	0	0	0	11677	1799	63	0	14023	0	PCLO	7	82784439	In_Frame_Del	DEL	TGAGCCAGGCTGTTGAGATGGGGGCTTTGC	TCGA-44-3919-01A-02D-1105-08		82784439	76354224	31	111149											
SLC26A3	1811	broad.mit.edu	37	chr7	107416986	107416986	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcactccttctggctcatAcatctgtaaggcagagaagc	8	11	4	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107416986	G	G	107416986	3	3	117	1	0	0	0	0	1	0	0	0	14632	391	14	5	734	5	SLC26A3	7	107416986	Missense_Mutation	SNP	A	TCGA-44-3919-01A-02D-1105-08	24632547	107416986	51721677	32	111150											
WDR91	29062	broad.mit.edu	37	chr7	134896244	134896244	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcgtcagtgcgctccacgGcctccgccatcgcagcgcta	11	18	1	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134896244	A	A	134896244	3	1	117	1	0	0	0	0	1	0	0	0	17465	1203	42	4	2292	4	WDR91	7	134896244	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08	27479258	134896244	24242419	33	111151											
PTN	5764	broad.mit.edu	37	chr7	136938242	136938242	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcttccagttgcaggggatCttacatctctgggtcttcat	9	10	5	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136938242	A	A	136938242	3	1	117	1	0	0	0	0	1	0	0	0	12874	912	32	3	260	3	PTN	7	136938242	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	2041998	136938242	22200421	34	111152											
ESYT2	57488	broad.mit.edu	37	chr7	158552780	158552780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacgcatttggcattaacGtgagccactccagtctcaag	9	11	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158552780	T	T	158552780	3	4	117	1	0	0	0	0	1	0	0	0	5307	1145	40	3	1289	3	ESYT2	7	158552780	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08	21614538	158552780	585883	35	111153											
FAM86B1	85002	broad.mit.edu	37	chr8	12040443	12040443	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttctgttcttcatgcCccatgcccctgctagcgtat	7	15	4	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12040443	A	A	12040443	1	1	117	0	1	0	0	0	0	0	0	0	5697	638	22	2		2	FAM86B1	8	12040443	3'UTR	SNP	C	TCGA-44-3919-01A-02D-1105-08		12040443	134323579	36	111154											
FAM86B2	653333	broad.mit.edu	37	chr8	12291631	12291631	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgcctctaagctctgtgtgGatgggagagagagaaatctc	13	7	3	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12291631	C	C	12291631	1	2	117	0	1	0	0	0	0	0	0	0	5698	1189	41	4		4	FAM86B2	8	12291631	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	251188	12291631	134072391	37	111155											
DPY19L4	286148	broad.mit.edu	37	chr8	95795753	95795753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatttttttgaatgaatcCatgaatgaaatgaaatgaaa	6	4	0	6			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95795753	A	A	95795753	1	1	117	0	1	0	0	0	0	0	0	0	4783	609	21	2		2	DPY19L4	8	95795753	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	83504122	95795753	50568269	38	111156											
PHRF1	57661	broad.mit.edu	37	chr11	587249	587251	+	Intron	DEL	TCC	-	-													cttgcaccagctggcatgttTcctctccaggttccgaggat							TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	587251	-	-	587249	6	5	117	0	1	1	0	1	0	0	0	0	11956	1798	62	0		0	PHRF1	11	587249	Intron	DEL	TCC	TCGA-44-3919-01A-02D-1105-08		587249	134419267	39	111157											
RCN1	5954	broad.mit.edu	37	chr11	32125102	32125102	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttttgtttgctttttcggCgatagcattgacccatgtgg	12	7	0	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32125102	G	G	32125102	1	3	117	0	1	0	0	0	0	0	0	0	13287	783	27	4		4	RCN1	11	32125102	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	31537853	32125102	102881414	40	111158											
ACP2	53	broad.mit.edu	37	chr11	47261647	47261647	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcccctaggaggtggagGgaagggggctgagtggttgt	19	7	0	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47261647	A	A	47261647	1	1	117	0	1	0	0	0	0	0	0	0	163	1247	43	4		4	ACP2	11	47261647	3'UTR	SNP	G	TCGA-44-3919-01A-02D-1105-08	15136545	47261647	87744869	41	111159											
ATG16L2	89849	broad.mit.edu	37	chr11	72535874	72535874	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccgacttcctacccgggCtcaggatgtgctggtaaggg	14	12	1	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72535874	T	T	72535874	3	4	117	1	0	0	0	0	1	0	0	0	1096	797	28	4	1017	4	ATG16L2	11	72535874	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	25274227	72535874	62470642	42	111160											
PRDM10	56980	broad.mit.edu	37	chr11	129788650	129788650	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaaacggggtagacacGggggtagaaaatttttaact	12	4	0	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129788650	A	A	129788650	1	1	117	0	1	0	0	0	0	0	0	0	12557	1131	39	4		4	PRDM10	11	129788650	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	57252776	129788650	5217866	43	111161											
FGF23	8074	broad.mit.edu	37	chr12	4488388	4488388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacaaaCacacacacacacaaagacaa	1	17	0	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4488388	A	A	4488388	1	1	117	0	1	0	0	0	0	0	0	0	5909	493	17	3		3	FGF23	12	4488388	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08		4488388	129363507	44	111162											
C12orf74	338809	broad.mit.edu	37	chr12	93100406	93100406	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtagaacctcttagctTtatggagaaaacagagtcat	8	7	2	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93100406	C	C	93100406	1	2	117	0	1	0	0	0	0	0	0	0	1727	1856	64	5		5	C12orf74	12	93100406	5'UTR	SNP	T	TCGA-44-3919-01A-02D-1105-08	88612018	93100406	40751489	45	111163			1	88		2	2	13	N	T_CAGAGT	3.256105e-05
C12orf74	338809	broad.mit.edu	37	chr12	93100418	93100423	+	In_Frame_Del	DEL	CAGAGT	-	-													tcttagctttatggagaaaaCagagtcattctgtccagagg							TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93100423	-	-	93100418	7	5	117	1	0	1	0	1	0	0	0	0	1727	478	17	0	13	0	C12orf74	12	93100418	In_Frame_Del	DEL	CAGAGT	TCGA-44-3919-01A-02D-1105-08	12	93100418	40751477	46	111164			1	88		2	2	13	N	T_CAGAGT	3.256105e-05
NOS1	4842	broad.mit.edu	37	chr12	117726156	117726156	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagaggcagtttctcaagtAccagcttcaaatccttggtg	9	11	2	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117726156	T	T	117726156	1	4	117	0	1	0	0	0	0	0	0	0	10636	406	14	5		5	NOS1	12	117726156	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	24625738	117726156	16125739	47	111165											
VPS33A	65082	broad.mit.edu	37	chr12	122724257	122724257	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgcactccagcctgggcAacagagcaagctgggtgaca	12	13	0	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122724257	G	G	122724257	1	3	117	0	1	0	0	0	0	0	0	0	17328	145	5	5		5	VPS33A	12	122724257	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	4998101	122724257	11127638	48	111166											
KHNYN	23351	broad.mit.edu	37	chr14	24901931	24901931	+	Frame_Shift_Del	DEL	T	-	-													accccctcccactacaggcaTggcctccagcactacttctc							TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24901931	-	-	24901931	7	5	117	1	0	1	0	1	0	0	0	0	8220	1461	51	0	1363	0	KHNYN	14	24901931	Frame_Shift_Del	DEL	T	TCGA-44-3919-01A-02D-1105-08		24901931	82447609	49	111167											
ZFYVE26	23503	broad.mit.edu	37	chr14	68215371	68215371	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgaacctggcagtcagttaTaagagacagcggaaaggcat	12	9	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68215371	A	A	68215371	1	1	117	0	1	0	0	0	0	0	0	0	17794	1421	49	5		5	ZFYVE26	14	68215371	Intron	SNP	T	TCGA-44-3919-01A-02D-1105-08	43313440	68215371	39134169	50	111168											
FGF7	2252	broad.mit.edu	37	chr15	49776611	49776611	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacggaggggaaatgtttgtTgccttaaatcaaaaggggat	13	4	1	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49776611	G	G	49776611	2	3	117	1	0	0	0	0	0	0	0	1	5914	1799	63	5		5	FGF7	15	49776611	Silent	SNP	T	TCGA-44-3919-01A-02D-1105-08		49776611	52754781	51	111169											
PRC1	9055	broad.mit.edu	37	chr15	91523760	91523760	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactttttttttttttttttTttttttgagacagggtctca	5	5	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91523760	G	G	91523760	1	3	117	0	1	0	0	0	0	0	0	0	12552	1856	64	5		5	PRC1	15	91523760	Intron	SNP	T	TCGA-44-3919-01A-02D-1105-08	41747149	91523760	11007632	52	111170											
CHD2	1106	broad.mit.edu	37	chr15	93552601	93552601	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgatttgactgagtgtggGagtggattctgttttctttt	12	3	2	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93552601	T	T	93552601	1	4	117	0	1	0	0	0	0	0	0	0	3356	1189	41	3		3	CHD2	15	93552601	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	2028841	93552601	8978791	53	111171											
KIF22	3835	broad.mit.edu	37	chr16	29816619	29816619	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgccgccggccagcgctgTggcgcctcctgaccgtcgtc	13	19	0	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29816619	C	C	29816619	2	2	117	1	0	0	0	0	0	0	0	1	8360	1702	59	5		5	KIF22	16	29816619	Silent	SNP	T	TCGA-44-3919-01A-02D-1105-08		29816619	60538134	54	111172											
AMFR	267	broad.mit.edu	37	chr16	56448115	56448115	+	Intron	DEL	A	-	-													gaaatcataatacaaagtttAaaaaaaaaaatctagtcaca							TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56448115	-	-	56448115	6	5	117	0	1	1	0	1	0	0	0	0	571	377	13	0		0	AMFR	16	56448115	Intron	DEL	A	TCGA-44-3919-01A-02D-1105-08	26631496	56448115	33906638	55	111173											
CDH8	1006	broad.mit.edu	37	chr16	61761209	61761209	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaagcatgtgtgtctgtttCcaacttcccttaattaggat	8	8	1	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61761209	A	A	61761209	1	1	117	0	1	0	0	0	0	0	0	0	3146	870	30	3		3	CDH8	16	61761209	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	5313094	61761209	28593544	56	111174											
GLG1	2734	broad.mit.edu	37	chr16	74496473	74496473	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagtcaggataccgtgacaGaatttaggaatgtcagcttt	10	6	2	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74496473	T	T	74496473	3	4	117	1	0	0	0	0	1	0	0	0	6500	933	33	3	796	3	GLG1	16	74496473	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08	12735264	74496473	15858280	57	111175											
KARS	3735	broad.mit.edu	37	chr16	75675407	75675407	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaaagaatctgccagaAgcctcatcagaagctttcct	7	13	3	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75675407	C	C	75675407	1	2	117	0	1	0	0	0	0	0	0	0	8050	87	3	5		5	KARS	16	75675407	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	1178934	75675407	14679346	58	111176											
CRISPLD2	83716	broad.mit.edu	37	chr16	84902348	84902348	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcccttgctcttagtatAgcacggattggattgcagaa	10	8	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84902348	G	G	84902348	1	3	117	0	1	0	0	0	0	0	0	0	3915	435	15	5		5	CRISPLD2	16	84902348	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	9226941	84902348	5452405	59	111177											
PLD2	5338	broad.mit.edu	37	chr17	4719995	4719995	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctgggcaaggactacagCaatcttatcaccaaggactg	11	10	2	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4719995	G	G	4719995	3	3	117	1	0	0	0	0	1	0	0	0	12141	709	25	4	1590	4	PLD2	17	4719995	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08		4719995	76475215	60	111178											
AATF	26574	broad.mit.edu	37	chr17	35344013	35344013	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatatctagtagatgggacAaagcccaatgcgggaaggta	13	6	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35344013	G	G	35344013	2	3	117	1	0	0	0	0	0	0	0	1	25	117	5	5		5	AATF	17	35344013	Silent	SNP	A	TCGA-44-3919-01A-02D-1105-08	30624018	35344013	45851197	61	111179											
ERBB2	2064	broad.mit.edu	37	chr17	37880981	37880982	+	In_Frame_Ins	INS	-	GCATACGTGATG	GCATACGTGATG													cgtacccttgtccccaggaaINSgcatacgtgatggctggtgt							TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	GCATACGTGATG	37880982	GCATACGTGATG	GCATACGTGATG	37880981	7	5	117	1	0	1	1	0	0	0	0	0	5248	69	3	0	2388	0	ERBB2	17	37880981	In_Frame_Ins	INS	-	TCGA-44-3919-01A-02D-1105-08	2536968	37880981	43314229	62	111180											
MED24	9862	broad.mit.edu	37	chr17	38183460	38183460	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctgccacctagtggtcaAtgtgaacatagggctgaagg	13	8	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38183460	C	C	38183460	1	2	117	0	1	0	0	0	0	0	0	0	9535	116	4	5		5	MED24	17	38183460	Intron	SNP	A	TCGA-44-3919-01A-02D-1105-08	302479	38183460	43011750	63	111181											
KRT15	3866	broad.mit.edu	37	chr17	39675117	39675117	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgagttctcagcaaaccCaagagatgctggcaggaggt	13	10	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39675117	G	G	39675117	1	3	117	0	1	0	0	0	0	0	0	0	8523	609	21	4		4	KRT15	17	39675117	5'UTR	SNP	C	TCGA-44-3919-01A-02D-1105-08	1491657	39675117	41520093	64	111182											
WNK4	65266	broad.mit.edu	37	chr17	40948621	40948621	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcgggcccaagggagggaGagcccagggaatggtacctg	20	9	0	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40948621	A	A	40948621	1	1	117	0	1	0	0	0	0	0	0	0	17507	957	33	4		4	WNK4	17	40948621	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	1273504	40948621	40246589	65	111183											
BPTF	2186	broad.mit.edu	37	chr17	65905889	65905889	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaccaaggtaaggagagtCagctgtggagggcagcctgg	18	7	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65905889	T	T	65905889	1	4	117	0	1	0	0	0	0	0	0	0	1504	841	29	4		4	BPTF	17	65905889	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	24957268	65905889	15289321	66	111184											
RPTOR	57521	broad.mit.edu	37	chr17	78936641	78936641	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccccgtggtctagccgGcctgtccccgcggtctcggc	13	18	2	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78936641	C	C	78936641	1	2	117	0	1	0	0	0	0	0	0	0	13776	1218	42	4		4	RPTOR	17	78936641	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	13030752	78936641	2258569	67	111185											
ANKRD12	23253	broad.mit.edu	37	chr18	9275652	9275652	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccgaagtatacaatgtacCattggactctcaggtaaaat	8	8	1	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9275652	T	T	9275652	3	4	117	1	0	0	0	0	1	0	0	0	640	594	21	4	5932	4	ANKRD12	18	9275652	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08		9275652	68801596	68	111186											
MC5R	4161	broad.mit.edu	37	chr18	13826656	13826656	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctctcatatatgccttcCgcagccaagagatgcggaag	9	13	1	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13826656	T	T	13826656	3	4	117	1	0	0	0	0	1	0	0	0	9460	652	23	4	894	4	MC5R	18	13826656	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	4551004	13826656	64250592	69	111187											
NETO1	81832	broad.mit.edu	37	chr18	70416305	70416305	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagattcatgtttgcttagAgacccaatgaggcagaacct	9	9	2	4			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70416305	G	G	70416305	2	3	117	1	0	0	0	0	0	0	0	1	10434	291	11	5		5	NETO1	18	70416305	Silent	SNP	A	TCGA-44-3919-01A-02D-1105-08	56589649	70416305	7660943	70	111188											
ZNF558	148156	broad.mit.edu	37	chr19	8922322	8922322	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtatgaatgctattgtGcccagtgagagaggaccttg	12	9	0	3			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8922322	A	A	8922322	3	1	117	1	0	0	0	0	1	0	0	0	18116	1319	46	4	368	4	ZNF558	19	8922322	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08		8922322	50206661	71	111189											
CD177	57126	broad.mit.edu	37	chr19	43858551	43858551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcccccagcaggtgcctGcgggagggtcgggaggagag	19	11	0	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43858551	T	T	43858551	1	4	117	0	1	0	0	0	0	0	0	0	3001	1334	46	3		3	CD177	19	43858551	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	34936229	43858551	15270432	72	111190											
RTN2	6253	broad.mit.edu	37	chr19	45998365	45998365	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccacttaccttctgtggaatCaggagttgaggaggctgtag	13	8	2	1			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45998365	G	G	45998365	3	3	117	1	0	0	0	0	1	0	0	0	13837	826	29	4	1610	4	RTN2	19	45998365	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	2139814	45998365	13130618	73	111191											
GRWD1	83743	broad.mit.edu	37	chr19	48949420	48949420	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggtcatggacgaggaggCctatgtgctctaccaccgag	14	11	2	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48949420	T	T	48949420	3	4	117	1	0	0	0	0	1	0	0	0	6877	739	26	4	160	4	GRWD1	19	48949420	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	2951055	48949420	10179563	74	111192											
PAX1	5075	broad.mit.edu	37	chr20	21689285	21689285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccttccccgccacccccGcagtgaatgggctagagaaa	11	16	0	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21689285	T	T	21689285	3	4	117	1	0	0	0	0	1	0	0	0	11572	1087	38	3	1016	3	PAX1	20	21689285	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08		21689285	41336235	75	111193											
GSS	2937	broad.mit.edu	37	chr20	33524368	33524368	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctaaggagaccctgatcCagaatgtcaacagctctgat	8	11	3	4			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33524368	G	G	33524368	1	3	117	0	1	0	0	0	0	0	0	0	6895	609	21	4		4	GSS	20	33524368	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	11835083	33524368	29501152	76	111194											
MYH7B	57644	broad.mit.edu	37	chr20	33575404	33575404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggtcagcagtggggacCtcctcaaaggccttttgcac	14	11	2	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33575404	A	A	33575404	3	1	117	1	0	0	0	0	1	0	0	0	10134	681	24	2	1376	2	MYH7B	20	33575404	Missense_Mutation	SNP	C	TCGA-44-3919-01A-02D-1105-08	51036	33575404	29450116	77	111195											
RTEL1	51750	broad.mit.edu	37	chr20	62319170	62319170	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaccggtgacacctctgaCatcagcggggtggaagtggt	15	10	2	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62319170	T	T	62319170	1	4	117	0	1	0	0	0	0	0	0	0	13831	493	17	4		4	RTEL1	20	62319170	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08	28743766	62319170	706350	78	111196											
BAGE2	85319	broad.mit.edu	37	chr21	11085852	11085852	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccatcaccaccaccaccaCcatcaccaccaccaccatca	0	24	3	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11085852	G	G	11085852	1	3	117	0	1	0	0	0	0	0	0	0	1297	522	18	4		4	BAGE2	21	11085852	Intron	SNP	C	TCGA-44-3919-01A-02D-1105-08		11085852	37044043	79	111197											
ITSN1	6453	broad.mit.edu	37	chr21	35260596	35260596	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggacctgcagttgtttgatGagccgtaggcagcgggctca	15	9	1	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35260596	A	A	35260596	3	1	117	1	0	0	0	0	1	0	0	0	7996	1291	45	4	5318	4	ITSN1	21	35260596	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08	24174744	35260596	12869299	80	111198											
WBP2NL	164684	broad.mit.edu	37	chr22	42209912	42209912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggctggggaccttggGtggctttggacttggagcca	19	8	0	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42209912	T	T	42209912	1	4	117	0	1	0	0	0	0	0	0	0	17387	1276	44	3		3	WBP2NL	22	42209912	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08		42209912	9094654	81	111199											
MAPK8IP2	23542	broad.mit.edu	37	chr22	51043785	51043785	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccccgcctctgtcctgccGggtctcccaggcaccgagtc	10	20	2	0			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51043785	A	A	51043785	1	1	117	0	1	0	0	0	0	0	0	0	9377	1131	39	4		4	MAPK8IP2	22	51043785	Intron	SNP	G	TCGA-44-3919-01A-02D-1105-08	8833873	51043785	260781	82	111200											
RBBP7	5931	broad.mit.edu	37	chrX	16863267	16863268	+	Intron	INS	-	GATAG	GATAG													cacaggtaaaaactccctatINSggttttcacatggtcatgta							TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	GATAG	16863268	GATAG	GATAG	16863267	6	5	117	0	1	1	1	0	0	0	0	0	13212	1479	51	0		0	RBBP7	23	16863267	Intron	INS	-	TCGA-44-3919-01A-02D-1105-08		16863267	138407293	83	111201											
OPHN1	4983	broad.mit.edu	37	chrX	67430108	67430108	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatctcttcccgggtactgGagaaatgatttcttgtctgt	9	10	3	2			TCGA-44-3919-01A-02D-1105-08	TCGA-44-3919-11A-01D-1105-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67430108	A	A	67430108	3	1	117	1	0	0	0	0	1	0	0	0	10969	1174	41	4	1753	4	OPHN1	23	67430108	Missense_Mutation	SNP	G	TCGA-44-3919-01A-02D-1105-08	50566841	67430108	87840452	84	111202											
SCNN1D	6339	broad.mit.edu	37	chr1	1221528	1221528	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtccctgggagccctgGtcgcgctctgctggcagctg	15	14	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1221528	A	A	1221528	3	1	118	1	0	0	0	0	1	0	0	0	14042	1261	44	4	501	4	SCNN1D	1	1221528	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08		1221528	248029093	1	111203											
ATAD3C	219293	broad.mit.edu	37	chr1	1403796	1403796	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctccaaggacggggtcctGaccgaggccatgatggacgc	15	13	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1403796	C	C	1403796	2	2	118	1	0	0	0	0	0	0	0	1	1079	1277	45	4		4	ATAD3C	1	1403796	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	182268	1403796	247846825	2	111204											
AJAP1	55966	broad.mit.edu	37	chr1	4771898	4771898	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggagagagagggccccGgggcccagtccccctcctgg	18	14	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4771898	A	A	4771898	1	1	118	0	1	0	0	0	0	0	0	0	438	1131	39	4		4	AJAP1	1	4771898	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3368102	4771898	244478723	3	111205											
UBE4B	10277	broad.mit.edu	37	chr1	10238755	10238755	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcaaagatgcggaaggcAgggatcaaatccacaatagc	10	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10238755	T	T	10238755	2	4	118	1	0	0	0	0	0	0	0	1	17009	175	7	5		5	UBE4B	1	10238755	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	5466857	10238755	239011866	4	111206											
PTCHD2	57540	broad.mit.edu	37	chr1	11595455	11595455	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcacctgagggtggggGctggactccagacctccctg	14	14	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11595455	C	C	11595455	1	2	118	0	1	0	0	0	0	0	0	0	12839	1218	42	4		4	PTCHD2	1	11595455	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1356700	11595455	237655166	5	111207											
PLOD1	5351	broad.mit.edu	37	chr1	12024852	12024852	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccggcagcaggtcagccagGagcgggcagcacaggacgcc	16	14	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12024852	T	T	12024852	1	4	118	0	1	0	0	0	0	0	0	0	12196	1189	41	3		3	PLOD1	1	12024852	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	429397	12024852	237225769	6	111208											
PLA2G5	5322	broad.mit.edu	37	chr1	20416375	20416375	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacagattcgcgtggggCgtggtcacctgcggtaaggc	15	9	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20416375	A	A	20416375	2	1	118	1	0	0	0	0	0	0	0	1	12102	755	27	3		3	PLA2G5	1	20416375	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	8391523	20416375	228834246	7	111209											
KIF17	57576	broad.mit.edu	37	chr1	21044096	21044096	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttctggatgcagcactggGcgcgcgcgcagtccacagtc	15	13	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21044096	C	C	21044096	3	2	118	1	0	0	0	0	1	0	0	0	8349	1203	42	4	3045	4	KIF17	1	21044096	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	627721	21044096	228206525	8	111210											
RUNX3	864	broad.mit.edu	37	chr1	25291042	25291042	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtaggtcgggaaggagtcGaagatgctgttcgatgccat	16	6	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25291042	A	A	25291042	2	1	118	1	0	0	0	0	0	0	0	1	13860	1049	37	4		4	RUNX3	1	25291042	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	4246946	25291042	223959579	9	111211											
TMEM57	55219	broad.mit.edu	37	chr1	25817874	25817874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgccaaaactaccttgtaGcattgctgttttgatgatat	8	7	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25817874	T	T	25817874	1	4	118	0	1	0	0	0	0	0	0	0	16307	986	34	3		3	TMEM57	1	25817874	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	526832	25817874	223432747	10	111212											
PTPRU	10076	broad.mit.edu	37	chr1	29618568	29618568	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggccctcctaccccttcttCatggctctggggctcccaac	8	19	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29618568	T	T	29618568	1	4	118	0	1	0	0	0	0	0	0	0	12921	841	29	4		4	PTPRU	1	29618568	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3800694	29618568	219632053	11	111213											
CSMD2	114784	broad.mit.edu	37	chr1	34049105	34049106	+	Intron	INS	-	T	T													caggtcccatggccttggggINSttgctgtggtagggaaggac							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34049106	T	T	34049105	6	5	118	0	1	1	1	0	0	0	0	0	3979	1276	44	0		0	CSMD2	1	34049105	Intron	INS	-	TCGA-44-4112-01A-01D-1458-08	4430537	34049105	215201516	12	111214											
CSMD2	114784	broad.mit.edu	37	chr1	34066431	34066432	+	Intron	DNP	GG	TA	TA													cagccttgacttgaaagcctGgcccttcccaccaggccagg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	34066432	TA	TA	34066431	1	4	118	0	1	0	0	0	0	0	0	0	3979	1363	47	2		2	CSMD2	1	34066431	Intron	DNP	GG	TCGA-44-4112-01A-01D-1458-08	17326	34066431	215184190	13	111215											
C1orf94	84970	broad.mit.edu	37	chr1	34684198	34684198	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catggtcttcactgtttctgAcaaccataaaattaatatat	4	8	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34684198	T	T	34684198	1	4	118	0	1	0	0	0	0	0	0	0	2093	290	10	5		5	C1orf94	1	34684198	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	617767	34684198	214566423	14	111216											
MACF1	23499	broad.mit.edu	37	chr1	39790502	39790502	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcagaatggagaattcaGagcagcaagagccagattat	10	6	2	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39790502	T	T	39790502	1	4	118	0	1	0	0	0	0	0	0	0	9232	957	33	3		3	MACF1	1	39790502	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	5106304	39790502	209460119	15	111217											
HPCAL4	51440	broad.mit.edu	37	chr1	40148339	40148339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatcttgtccacacgctGctggggcgtgagcccgtcct	13	13	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40148339	T	T	40148339	3	4	118	1	0	0	0	0	1	0	0	0	7398	1328	46	3	134	3	HPCAL4	1	40148339	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	357837	40148339	209102282	16	111218											
MFSD2A	84879	broad.mit.edu	37	chr1	40428573	40428573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaagcagacccgtgccGgccagcgcaccaggttcaag	13	14	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40428573	T	T	40428573	1	4	118	0	1	0	0	0	0	0	0	0	9623	1131	39	1		1	MFSD2A	1	40428573	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	280234	40428573	208822048	17	111219											
CTPS	1503	broad.mit.edu	37	chr1	41453091	41453091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtgggtgatgagacagGcgttaatacctgtagatgaa	15	4	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41453091	T	T	41453091	3	4	118	1	0	0	0	0	1	0	0	0	4056	1203	42	3	395	3	CTPS	1	41453091	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1024518	41453091	207797530	18	111220											
GPX7	2882	broad.mit.edu	37	chr1	53073948	53073948	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctagagacttctgggaagGagcccacctggaacttctgg	12	11	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53073948	A	A	53073948	3	1	118	1	0	0	0	0	1	0	0	0	6811	1175	41	4	425	4	GPX7	1	53073948	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	11620857	53073948	196176673	19	111221											
CPT2	1376	broad.mit.edu	37	chr1	53676835	53676835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgccgcattcaagcacGgccgcactgagaccatccgc	10	17	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53676835	T	T	53676835	3	4	118	1	0	0	0	0	1	0	0	0	3866	1116	39	1	1503	1	CPT2	1	53676835	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	602887	53676835	195573786	20	111222											
PPAP2B	8613	broad.mit.edu	37	chr1	56989596	56989596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagggccgtattcacatcCctgatacacacttgtctgtc	8	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56989596	A	A	56989596	1	1	118	0	1	0	0	0	0	0	0	0	12387	638	22	2		2	PPAP2B	1	56989596	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3312761	56989596	192261025	21	111223											
L1TD1	54596	broad.mit.edu	37	chr1	62675610	62675610	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgagctagaggagctggaTgaagaggcctcagggatgga	17	7	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62675610	A	A	62675610	3	1	118	1	0	0	0	0	1	0	0	0	8661	1461	51	5	1170	5	L1TD1	1	62675610	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	5686014	62675610	186575011	22	111224											
DOCK7	85440	broad.mit.edu	37	chr1	63008222	63008222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggtaacaaatgagctagCataaaattgttcactaagag	8	5	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63008222	A	A	63008222	1	1	118	0	1	0	0	0	0	0	0	0	4732	725	25	3		3	DOCK7	1	63008222	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	332612	63008222	186242399	23	111225											
PGM1	5236	broad.mit.edu	37	chr1	64114124	64114124	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcagagccaaaccatatcAagtaccttctcaggtactgg	8	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64114124	G	G	64114124	1	3	118	0	1	0	0	0	0	0	0	0	11892	145	5	5		5	PGM1	1	64114124	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	1105902	64114124	185136497	24	111226											
PDE4B	5142	broad.mit.edu	37	chr1	66833364	66833364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaattaagtcatcatttGgtctgatttattagattcag	6	4	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66833364	T	T	66833364	1	4	118	0	1	0	0	0	0	0	0	0	11734	1363	47	2		2	PDE4B	1	66833364	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2719240	66833364	182417257	25	111227											
SGIP1	84251	broad.mit.edu	37	chr1	67155929	67155929	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcctccaatagcacccttAgcgcgggctgaaagcacttc	8	16	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67155929	T	T	67155929	3	4	118	1	0	0	0	0	1	0	0	0	14319	417	15	5	1566	5	SGIP1	1	67155929	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	322565	67155929	182094692	26	111228											
LRRC7	57554	broad.mit.edu	37	chr1	70225869	70225869	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttttgtttctgcgtttcTctagtgcagtgcctggagat	11	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70225869	A	A	70225869	1	1	118	0	1	0	0	0	0	0	0	0	9107	1566	54	5		5	LRRC7	1	70225869	5'UTR	SNP	T	TCGA-44-4112-01A-01D-1458-08	3069940	70225869	179024752	27	111229											
C1orf173	127254	broad.mit.edu	37	chr1	75055219	75055219	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaatccctaaagcattgtCacagtagtatttcccaagct	6	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75055219	A	A	75055219	1	1	118	0	1	0	0	0	0	0	0	0	2034	841	29	3		3	C1orf173	1	75055219	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4829350	75055219	174195402	28	111230											
LHX8	431707	broad.mit.edu	37	chr1	75596416	75596416	+	Frame_Shift_Del	DEL	G	-	-													ggttatgcagattctgagcaGggtaagtttgtggaaagaac							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75596416	-	-	75596416	7	5	118	1	0	1	0	1	0	0	0	0	8848	1014	35	0	19	0	LHX8	1	75596416	Frame_Shift_Del	DEL	G	TCGA-44-4112-01A-01D-1458-08	541197	75596416	173654205	29	111231											
SLC44A5	204962	broad.mit.edu	37	chr1	75681629	75681629	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatacaacatttaaaatgaGatttaaaattttttattgtt	3	2	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75681629	A	A	75681629	1	1	118	0	1	0	0	0	0	0	0	0	14753	957	33	4		4	SLC44A5	1	75681629	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	85213	75681629	173568992	30	111232											
AK5	26289	broad.mit.edu	37	chr1	77987585	77987585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggcttcctgattgacgGctatcctcgggaggtgaagc	15	10	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77987585	T	T	77987585	3	4	118	1	0	0	0	0	1	0	0	0	443	1203	42	3	1431	3	AK5	1	77987585	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2305956	77987585	171263036	31	111233											
ZZZ3	26009	broad.mit.edu	37	chr1	78047770	78047770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcccatacgatctcaggCaattgaacaactctctgtgg	9	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78047770	A	A	78047770	3	1	118	1	0	0	0	0	1	0	0	0	18385	709	25	3	1061	3	ZZZ3	1	78047770	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	60185	78047770	171202851	32	111234											
MCOLN2	255231	broad.mit.edu	37	chr1	85431433	85431433	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatatccaggaaagcctctCcctcagttccttttgaagta	6	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85431433	A	A	85431433	1	1	118	0	1	0	0	0	0	0	0	0	9489	870	30	3		3	MCOLN2	1	85431433	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	7383663	85431433	163819188	33	111235											
CLCA4	22802	broad.mit.edu	37	chr1	87012868	87012868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaccagtcaaatacttcCttcattaagctgaataataa	4	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87012868	A	A	87012868	2	1	118	1	0	0	0	0	0	0	0	1	3490	668	24	2		2	CLCA4	1	87012868	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1581435	87012868	162237753	34	111236											
CCBL2	56267	broad.mit.edu	37	chr1	89408538	89408538	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcatgagccaccacgCccagccagtaagcagttaat	9	13	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89408538	T	T	89408538	1	4	118	0	1	0	0	0	0	0	0	0	2759	754	26	4		4	CCBL2	1	89408538	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2395670	89408538	159842083	35	111237											
RPL5	6125	broad.mit.edu	37	chr1	93300537	93300537	+	Intron	SNP	G	T	T													tggagagttttctgcaagatGtttgtacatggataagatag							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93300537	T	T	93300537	1	4	118	0	1	0	0	0	0	0	0	0	13708	1392	48	3		3	RPL5	1	93300537	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3891999	93300537	155950084	36	111238	484	2									
RPL5	6125	broad.mit.edu	37	chr1	93300541	93300541	+	Intron	SNP	G	T	T													gagttttctgcaagatgtttGtacatggataagatagctta							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93300541	T	T	93300541	1	4	118	0	1	0	0	0	0	0	0	0	13708	1392	48	3		3	RPL5	1	93300541	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4	93300541	155950080	37	111239	484	2									
PTBP2	58155	broad.mit.edu	37	chr1	97278637	97278637	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcgctaacactgggggcActgtgaaagcatttaagttt	11	7	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97278637	T	T	97278637	3	4	118	1	0	0	0	0	1	0	0	0	12832	159	6	5	1491	5	PTBP2	1	97278637	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	3978096	97278637	151971984	38	111240											
LPPR4	9890	broad.mit.edu	37	chr1	99771388	99771388	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgatggaattgctcatAcagaaggcatcctcaaccga	10	10	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99771388	G	G	99771388	3	3	118	1	0	0	0	0	1	0	0	0	9014	391	14	5	1140	5	LPPR4	1	99771388	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	2492751	99771388	149479233	39	111241											
AGL	178	broad.mit.edu	37	chr1	100353473	100353473	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattcagattttcttctttTgtttctattgacaacaagcg	5	7	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100353473	C	C	100353473	1	2	118	0	1	0	0	0	0	0	0	0	384	1827	63	5		5	AGL	1	100353473	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	582085	100353473	148897148	40	111242											
SASS6	163786	broad.mit.edu	37	chr1	100598693	100598693	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacttttcttctggttgccgGatgctggacaccggaagcga	12	10	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100598693	T	T	100598693	1	4	118	0	1	0	0	0	0	0	0	0	13962	1189	41	3		3	SASS6	1	100598693	5'Flank	SNP	G	TCGA-44-4112-01A-01D-1458-08	245220	100598693	148651928	41	111243											
CDC14A	8556	broad.mit.edu	37	chr1	100856240	100856240	+	Intron	DEL	A	-	-													gtttgccttctgtatatgttAactttgtctctatggttaca							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100856240	-	-	100856240	6	5	118	0	1	1	0	1	0	0	0	0	3086	377	13	0		0	CDC14A	1	100856240	Intron	DEL	A	TCGA-44-4112-01A-01D-1458-08	257547	100856240	148394381	42	111244											
VCAM1	7412	broad.mit.edu	37	chr1	101190255	101190255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctctgtgaccatgacctGttccagcgagggtctaccag	12	12	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101190255	T	T	101190255	3	4	118	1	0	0	0	0	1	0	0	0	17264	1377	48	3	751	3	VCAM1	1	101190255	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	334015	101190255	148060366	43	111245											
COL11A1	1301	broad.mit.edu	37	chr1	103488398	103488398	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attctttatattcataaaaaTcatattcgcctaaatctcca	1	9	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103488398	C	C	103488398	3	2	118	1	0	0	0	0	1	0	0	0	3699	1435	50	5	4515	5	COL11A1	1	103488398	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	2298143	103488398	145762223	44	111246											
SLC6A17	388662	broad.mit.edu	37	chr1	110716458	110716458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcctccacggcccgcaCcctatccctccttgcctctc	6	22	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110716458	A	A	110716458	1	1	118	0	1	0	0	0	0	0	0	0	14794	522	18	3		3	SLC6A17	1	110716458	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	7228060	110716458	138534163	45	111247											
OVGP1	5016	broad.mit.edu	37	chr1	111970272	111970272	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgacgaactcataaagccTggcacttcctggactgagtg	11	10	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111970272	A	A	111970272	1	1	118	0	1	0	0	0	0	0	0	0	11419	1595	55	5		5	OVGP1	1	111970272	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1253814	111970272	137280349	46	111248											
RSBN1	54665	broad.mit.edu	37	chr1	114319740	114319740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatttacttaagggagcCcaagacaaatggttttcaaa	7	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114319740	A	A	114319740	1	1	118	0	1	0	0	0	0	0	0	0	13807	638	22	2		2	RSBN1	1	114319740	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2349468	114319740	134930881	47	111249											
SPAG17	200162	broad.mit.edu	37	chr1	118539080	118539080	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcttctatgtcactgtctcGaagaagttccattcctgatc	6	11	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118539080	A	A	118539080	4	1	118	1	0	0	0	0	0	1	0	0	15095	1066	37	4	1765	4	SPAG17	1	118539080	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	4219340	118539080	130711541	48	111250											
PDE4DIP	9659	broad.mit.edu	37	chr1	144919118	144919118	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgccattattaaaattgCtatagaagtattatacatga	8	4	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144919118	G	G	144919118	1	3	118	0	1	0	0	0	0	0	0	0	11737	812	28	4		4	PDE4DIP	1	144919118	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	26380038	144919118	104331503	49	111251											
NBPF10	100132406	broad.mit.edu	37	chr1	145439705	145439707	+	Intron	DEL	AAA	-	-													atctttgaacttttctgtctAaaatatcttgccctcctttg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145439707	-	-	145439705	6	5	118	0	1	1	0	1	0	0	0	0	10287	377	13	0		0	NBPF10	1	145439705	Intron	DEL	AAA	TCGA-44-4112-01A-01D-1458-08	520587	145439705	103810916	50	111252											
PLEKHO1	51177	broad.mit.edu	37	chr1	150129460	150129460	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcccccttcgtgtccagtAaatccccttgcccattcaga	7	16	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150129460	T	T	150129460	1	4	118	0	1	0	0	0	0	0	0	0	12179	377	13	5		5	PLEKHO1	1	150129460	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	4689755	150129460	99121161	51	111253											
TARS2	80222	broad.mit.edu	37	chr1	150470105	150470105	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgggagcattatcaggaaGacatgtttgccgtgcagccc	12	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150470105	A	A	150470105	3	1	118	1	0	0	0	0	1	0	0	0	15679	942	33	4	1158	4	TARS2	1	150470105	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	340645	150470105	98780516	52	111254											
TUFT1	7286	broad.mit.edu	37	chr1	151534465	151534465	+	Intron	DEL	C	-	-													gtgaagtggtgatgataagaCccgctccacagagctggcag							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151534465	-	-	151534465	6	5	118	0	1	1	0	1	0	0	0	0	16898	522	18	0		0	TUFT1	1	151534465	Intron	DEL	C	TCGA-44-4112-01A-01D-1458-08	1064360	151534465	97716156	53	111255											
TUFT1	7286	broad.mit.edu	37	chr1	151534972	151534972	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagaaacaggtcttctgcAttagctgaggggcaggagtt	14	6	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151534972	T	T	151534972	1	4	118	0	1	0	0	0	0	0	0	0	16898	232	8	5		5	TUFT1	1	151534972	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	507	151534972	97715649	54	111256											
IVL	3713	broad.mit.edu	37	chr1	152882470	152882470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaaaagcacatgactgCtgtaaagggactgcctgagc	13	8	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152882470	T	T	152882470	3	4	118	1	0	0	0	0	1	0	0	0	7999	797	28	4	199	4	IVL	1	152882470	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1347498	152882470	96368151	55	111257											
IVL	3713	broad.mit.edu	37	chr1	152882785	152882785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacctagagcagcaggaggGacagctgaagcacccggagc	15	12	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152882785	T	T	152882785	3	4	118	1	0	0	0	0	1	0	0	0	7999	1174	41	3	514	3	IVL	1	152882785	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	315	152882785	96367836	56	111258											
PGLYRP4	57115	broad.mit.edu	37	chr1	153303330	153303330	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacatcactgtggcccacCagcaggtagttgggagtcag	13	12	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153303330	A	A	153303330	2	1	118	1	0	0	0	0	0	0	0	1	11891	581	21	2		2	PGLYRP4	1	153303330	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	420545	153303330	95947291	57	111259											
INTS3	65123	broad.mit.edu	37	chr1	153744497	153744499	+	Intron	DEL	GGT	-	-													ggtctgcagtgattgctgtcGgtggtggtggtggtggtggt							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153744499	-	-	153744497	6	5	118	0	1	1	0	1	0	0	0	0	7849	1131	39	0		0	INTS3	1	153744497	Intron	DEL	GGT	TCGA-44-4112-01A-01D-1458-08	441167	153744497	95506124	58	111260											
KCNN3	3782	broad.mit.edu	37	chr1	154821445	154821445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcatcagtgaaagtttgCcgagtagaatgttctcagag	13	6	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154821445	T	T	154821445	1	4	118	0	1	0	0	0	0	0	0	0	8150	754	26	4		4	KCNN3	1	154821445	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1076948	154821445	94429176	59	111261											
SYT11	23208	broad.mit.edu	37	chr1	155851156	155851156	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttcctcgttatcgacttcGatcgcaccaccaagaatgag	8	12	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155851156	A	A	155851156	3	1	118	1	0	0	0	0	1	0	0	0	15586	1058	37	4	1167	4	SYT11	1	155851156	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1029711	155851156	93399465	60	111262											
ARHGEF2	9181	broad.mit.edu	37	chr1	155931858	155931858	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcctcaccccaggtggcCgtctcccagtggccctctcc	8	20	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155931858	T	T	155931858	1	4	118	0	1	0	0	0	0	0	0	0	905	667	23	4		4	ARHGEF2	1	155931858	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	80702	155931858	93318763	61	111263											
FCRL5	83416	broad.mit.edu	37	chr1	157514076	157514076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtatccaggatctcgGgctgtcagatatgacgctgt	11	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157514076	T	T	157514076	3	4	118	1	0	0	0	0	1	0	0	0	5855	1232	43	2	2165	2	FCRL5	1	157514076	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1582218	157514076	91736545	62	111264											
FCRL4	83417	broad.mit.edu	37	chr1	157556386	157556386	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcattgtggccaatagaccAcagatttagcgctgagaata	10	8	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157556386	T	T	157556386	1	4	118	0	1	0	0	0	0	0	0	0	5854	174	6	5		5	FCRL4	1	157556386	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	42310	157556386	91694235	63	111265											
CD5L	922	broad.mit.edu	37	chr1	157805488	157805488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctccagcactgacagttGggaaagtatgagatgtgggg	14	6	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157805488	T	T	157805488	1	4	118	0	1	0	0	0	0	0	0	0	3057	1363	47	2		2	CD5L	1	157805488	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	249102	157805488	91445133	64	111266											
SPTA1	6708	broad.mit.edu	37	chr1	158612493	158612493	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactctgaagtctctgagagCaggcatggtagcctcaacag	12	10	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158612493	G	G	158612493	1	3	118	0	1	0	0	0	0	0	0	0	15234	725	25	4		4	SPTA1	1	158612493	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	807005	158612493	90638128	65	111267											
ATP1A2	477	broad.mit.edu	37	chr1	160104960	160104960	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggcatgcgtggtgcacGgctctgacctgaaggacatg	14	11	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160104960	A	A	160104960	3	1	118	1	0	0	0	0	1	0	0	0	1133	1116	39	4	2048	4	ATP1A2	1	160104960	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1492467	160104960	89145661	66	111268											
SLAMF1	6504	broad.mit.edu	37	chr1	160604515	160604515	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatgctgggggccgagggtGagggacaggaggtgggagct	23	6	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160604515	T	T	160604515	2	4	118	1	0	0	0	0	0	0	0	1	14480	1277	45	3		3	SLAMF1	1	160604515	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	499555	160604515	88646106	67	111269											
FCER1G	2207	broad.mit.edu	37	chr1	161187954	161187954	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagagaaggaataaaagggGatcctccacaaagtttggag	13	5	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161187954	T	T	161187954	1	4	118	0	1	0	0	0	0	0	0	0	5832	1189	41	3		3	FCER1G	1	161187954	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	583439	161187954	88062667	68	111270											
ATF6	22926	broad.mit.edu	37	chr1	161790982	161790982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatatttattttggacactAatgctaaaaacttaaattct	4	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161790982	G	G	161790982	1	3	118	0	1	0	0	0	0	0	0	0	1088	377	13	5		5	ATF6	1	161790982	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	603028	161790982	87459639	69	111271											
NUF2	83540	broad.mit.edu	37	chr1	163317609	163317609	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagaactgaagaaattgaaGactgaagaaaattcgttcaa	8	5	2	7			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163317609	C	C	163317609	3	2	118	1	0	0	0	0	1	0	0	0	10842	933	33	4	1047	4	NUF2	1	163317609	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1526627	163317609	85933012	70	111272											
RXRG	6258	broad.mit.edu	37	chr1	165380405	165380405	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggacaacagtgggaaagTttattacccacatgagcctc	9	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165380405	C	C	165380405	1	2	118	0	1	0	0	0	0	0	0	0	13876	1740	60	5		5	RXRG	1	165380405	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2062796	165380405	83870216	71	111273											
ILDR2	387597	broad.mit.edu	37	chr1	166926994	166926994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcctagattcaaaatagGggcattattaccatgaacaa	6	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166926994	T	T	166926994	1	4	118	0	1	0	0	0	0	0	0	0	7780	1247	43	2		2	ILDR2	1	166926994	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1546589	166926994	82323627	72	111274											
ADCY10	55811	broad.mit.edu	37	chr1	167779891	167779891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggtgaaacctaaccaGgcagtaggcttctgggcttc	12	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167779891	T	T	167779891	1	4	118	0	1	0	0	0	0	0	0	0	293	1015	35	2		2	ADCY10	1	167779891	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	852897	167779891	81470730	73	111275											
F5	2153	broad.mit.edu	37	chr1	169519136	169519136	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtccacgtcactgtagTatggtcttgttaagcactgg	11	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169519136	A	A	169519136	3	1	118	1	0	0	0	0	1	0	0	0	5391	1638	57	5	5224	5	F5	1	169519136	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	1739245	169519136	79731485	74	111276											
FMO2	2327	broad.mit.edu	37	chr1	171155084	171155084	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaatttattaaacaactcTgatcagattttatttctact	3	6	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171155084	C	C	171155084	1	2	118	0	1	0	0	0	0	0	0	0	6013	1595	55	5		5	FMO2	1	171155084	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1635948	171155084	78095537	75	111277											
CACYBP	27101	broad.mit.edu	37	chr1	174969257	174969257	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgagggctcggcgcggGgtttcctgttcctccttctg	15	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174969257	T	T	174969257	1	4	118	0	1	0	0	0	0	0	0	0	2590	1247	43	2		2	CACYBP	1	174969257	5'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	3814173	174969257	74281364	76	111278											
TNN	63923	broad.mit.edu	37	chr1	175067547	175067547	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggacccggtgcaggcCgccattgacaagtacgtggt	14	12	0	1	rs143826266	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175067547	G	G	175067547	2	3	118	1	0	0	0	0	0	0	0	1	16446	639	23	4		4	TNN	1	175067547	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	98290	175067547	74183074	77	111279											
TNR	7143	broad.mit.edu	37	chr1	175328961	175328961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccactcatggtgcaagacTgctgctgcactctacaaaac	7	13	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175328961	A	A	175328961	1	1	118	0	1	0	0	0	0	0	0	0	16461	1595	55	5		5	TNR	1	175328961	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	261414	175328961	73921660	78	111280											
TNR	7143	broad.mit.edu	37	chr1	175365895	175365895	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccgtcccattccagctcaAtggacctgtcgctgatacca	8	16	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175365895	T	T	175365895	3	4	118	1	0	0	0	0	1	0	0	0	16461	101	4	5	3127	5	TNR	1	175365895	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	36934	175365895	73884726	79	111281											
RFWD2	64326	broad.mit.edu	37	chr1	175957580	175957580	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaaagagtaagaacttacTtaaaatttcttggcacgaaa	6	6	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175957580	A	A	175957580	1	1	118	0	1	0	0	0	0	0	0	0	13368	1624	56	5		5	RFWD2	1	175957580	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	591685	175957580	73293041	80	111282											
PAPPA2	60676	broad.mit.edu	37	chr1	176659372	176659372	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggactctaccatgtctttaAaggagtcagtgaaagagaat	11	6	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176659372	T	T	176659372	3	4	118	1	0	0	0	0	1	0	0	0	11527	14	1	5	2251	5	PAPPA2	1	176659372	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	701792	176659372	72591249	81	111283											
PAPPA2	60676	broad.mit.edu	37	chr1	176709330	176709330	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcagaatcatcagggacaGaggtacaaacttccctttct	10	10	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176709330	T	T	176709330	3	4	118	1	0	0	0	0	1	0	0	0	11527	933	33	3	4252	3	PAPPA2	1	176709330	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	49958	176709330	72541291	82	111284											
PAPPA2	60676	broad.mit.edu	37	chr1	176734888	176734888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaactgtacctctatagGcccaggtctcatgaagtgtg	12	9	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176734888	T	T	176734888	3	4	118	1	0	0	0	0	1	0	0	0	11527	1203	42	3	4345	3	PAPPA2	1	176734888	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	25558	176734888	72515733	83	111285											
ASTN1	460	broad.mit.edu	37	chr1	176927566	176927566	+	Frame_Shift_Del	DEL	C	-	-													cagttcggctggtggaatcaCaaagctcttgctgaggggca							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176927566	-	-	176927566	7	5	118	1	0	1	0	1	0	0	0	0	1068	478	17	0	2293	0	ASTN1	1	176927566	Frame_Shift_Del	DEL	C	TCGA-44-4112-01A-01D-1458-08	192678	176927566	72323055	84	111286											
ASTN1	460	broad.mit.edu	37	chr1	176983875	176983875	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctccacgtcatgtctgtGtaaggagcagtgatatgtgg	13	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176983875	T	T	176983875	1	4	118	0	1	0	0	0	0	0	0	0	1068	1392	48	3		3	ASTN1	1	176983875	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	56309	176983875	72266746	85	111287											
CACNA1E	777	broad.mit.edu	37	chr1	181686252	181686252	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctctggcccgagccagtAtcaaaagtgcaaaggtagac	10	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181686252	T	T	181686252	3	4	118	1	0	0	0	0	1	0	0	0	2568	449	16	5	1381	5	CACNA1E	1	181686252	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	4702377	181686252	67564369	86	111288											
CACNA1E	777	broad.mit.edu	37	chr1	181708286	181708286	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcatatccttctgcagatgAtagaccaaggcttgatcctg	8	10	2	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181708286	T	T	181708286	3	4	118	1	0	0	0	0	1	0	0	0	2568	333	12	5	3714	5	CACNA1E	1	181708286	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	22034	181708286	67542335	87	111289											
CACNA1E	777	broad.mit.edu	37	chr1	181740385	181740385	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtgctggacacatcacaCagcttggtaatgctcactgt	9	11	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181740385	T	T	181740385	1	4	118	0	1	0	0	0	0	0	0	0	2568	493	17	4		4	CACNA1E	1	181740385	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	32099	181740385	67510236	88	111290											
UCHL5	51377	broad.mit.edu	37	chr1	193029091	193029091	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggtaacggaaccagcatCgcggtagggacatcctcgct	13	12	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193029091	T	T	193029091	1	4	118	0	1	0	0	0	0	0	0	0	17048	899	31	4		4	UCHL5	1	193029091	5'Flank	SNP	C	TCGA-44-4112-01A-01D-1458-08	11288706	193029091	56221530	89	111291											
ASPM	259266	broad.mit.edu	37	chr1	197058976	197058976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaacttagagatttaagcCctagtgatgagtaaacccaa	7	7	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197058976	A	A	197058976	1	1	118	0	1	0	0	0	0	0	0	0	1060	638	22	2		2	ASPM	1	197058976	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4029885	197058976	52191645	90	111292											
ASPM	259266	broad.mit.edu	37	chr1	197074309	197074309	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagtggaatatcttctccAatatccctggaaaaggtaag	8	8	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197074309	C	C	197074309	3	2	118	1	0	0	0	0	1	0	0	0	1060	130	5	5	6405	5	ASPM	1	197074309	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	15333	197074309	52176312	91	111293											
CRB1	23418	broad.mit.edu	37	chr1	197390141	197390141	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttaacaggaatccactgcGaagaagacgtcaatgaatgt	9	7	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197390141	A	A	197390141	3	1	118	1	0	0	0	0	1	0	0	0	3880	1059	37	4	1205	4	CRB1	1	197390141	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	315832	197390141	51860480	92	111294											
PTPRC	5788	broad.mit.edu	37	chr1	198700603	198700603	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttataggtaaatgtttgTatgtgagtgagatttctcag	11	2	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198700603	A	A	198700603	1	1	118	0	1	0	0	0	0	0	0	0	12905	1653	57	5		5	PTPRC	1	198700603	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1310462	198700603	50550018	93	111295											
PTPRC	5788	broad.mit.edu	37	chr1	198711621	198711621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaacagtagatgatttcCtgaaaactaaaacgtggtaa	7	7	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198711621	A	A	198711621	1	1	118	0	1	0	0	0	0	0	0	0	12905	696	24	2		2	PTPRC	1	198711621	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	11018	198711621	50539000	94	111296											
PPP1R12B	4660	broad.mit.edu	37	chr1	202406861	202406861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accttatgttgcctcgctgaActtagttaagtgtggaaaag	10	7	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202406861	G	G	202406861	1	3	118	0	1	0	0	0	0	0	0	0	12456	58	2	5		5	PPP1R12B	1	202406861	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	3695240	202406861	46843760	95	111297											
PPP1R12B	4660	broad.mit.edu	37	chr1	202406948	202406948	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatttgcttctctcataGttctcttctggcctttttaa	4	9	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202406948	T	T	202406948	5	4	118	1	0	0	0	0	0	0	1	0	12456	1043	36	3	1292	3	PPP1R12B	1	202406948	Splice_Site	SNP	G	TCGA-44-4112-01A-01D-1458-08	87	202406948	46843673	96	111298											
KDM5B	10765	broad.mit.edu	37	chr1	202699059	202699059	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgcattttcttaactcgttCccaccgctcactggagaggc	8	15	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202699059	G	G	202699059	3	3	118	1	0	0	0	0	1	0	0	0	8204	864	30	4	369	4	KDM5B	1	202699059	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	292111	202699059	46551562	97	111299											
ADORA1	134	broad.mit.edu	37	chr1	203134620	203134620	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgtgtgggtgctgccCccgcttctcctcatggtcct	10	14	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203134620	T	T	203134620	2	4	118	1	0	0	0	0	0	0	0	1	326	610	22	4		4	ADORA1	1	203134620	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	435561	203134620	46116001	98	111300											
FMOD	2331	broad.mit.edu	37	chr1	203225393	203225393	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataaggaaactgaagaaaaAgtgccagtgaagaaatctat	10	4	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203225393	T	T	203225393	1	4	118	0	1	0	0	0	0	0	0	0	6017	87	3	5		5	FMOD	1	203225393	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	90773	203225393	46025228	99	111301											
NFASC	23114	broad.mit.edu	37	chr1	204950910	204950910	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcagcctctccagcctgtCtgtccctctgcccagcccat	8	19	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204950910	T	T	204950910	1	4	118	0	1	0	0	0	0	0	0	0	10454	928	32	4		4	NFASC	1	204950910	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1725517	204950910	44299711	100	111302											
NFASC	23114	broad.mit.edu	37	chr1	204970313	204970313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accagcccctgatgagcagtCcatatggaacgtcacggtgc	11	13	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204970313	A	A	204970313	3	1	118	1	0	0	0	0	1	0	0	0	10454	855	30	3	3542	3	NFASC	1	204970313	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	19403	204970313	44280308	101	111303											
CNTN2	6900	broad.mit.edu	37	chr1	205022256	205022256	+	5'UTR	DEL	C	-	-													tcagcctccagctgggctgtCcccaagctgagctgaggctc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	205022256	-	-	205022256	6	5	118	0	1	1	0	1	0	0	0	0	3673	870	30	0		0	CNTN2	1	205022256	5'UTR	DEL	C	TCGA-44-4112-01A-01D-1458-08	51943	205022256	44228365	102	111304											
CNTN2	6900	broad.mit.edu	37	chr1	205030313	205030313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgggtatgaggagctgcGggcactggaggggtaggccc	20	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205030313	A	A	205030313	1	1	118	0	1	0	0	0	0	0	0	0	3673	1131	39	4		4	CNTN2	1	205030313	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	8057	205030313	44220308	103	111305											
LGTN	1939	broad.mit.edu	37	chr1	206781731	206781731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcctccatctcactctGcgttttacttcatcatttcc	3	15	5	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206781731	A	A	206781731	1	1	118	0	1	0	0	0	0	0	0	0	8832	1334	46	4		4	LGTN	1	206781731	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1751418	206781731	42468890	104	111306											
KCNK2	3776	broad.mit.edu	37	chr1	215368531	215368531	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatttaaaatatttaaacAttttaaaatgttaatatttt	1	2	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215368531	G	G	215368531	1	3	118	0	1	0	0	0	0	0	0	0	8136	232	8	5		5	KCNK2	1	215368531	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	8586800	215368531	33882090	105	111307											
USH2A	7399	broad.mit.edu	37	chr1	215802113	215802113	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctctgtaccaatattttttCtgggatatttagcaaaggcc	8	8	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215802113	T	T	215802113	1	4	118	0	1	0	0	0	0	0	0	0	17162	928	32	4		4	USH2A	1	215802113	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	433582	215802113	33448508	106	111308											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220330962	220330962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattgtaataaaaaaacaCaaagtctaatttcaataaga	3	5	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220330962	A	A	220330962	1	1	118	0	1	0	0	0	0	0	0	0	13044	493	17	3		3	RAB3GAP2	1	220330962	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4528849	220330962	28919659	107	111309											
FAM177B	400823	broad.mit.edu	37	chr1	222919870	222919870	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgccctgtttttaattttcTagttgttttgtttcattatg	7	5	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	222919870	C	C	222919870	1	2	118	0	1	0	0	0	0	0	0	0	5547	1537	53	5		5	FAM177B	1	222919870	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2588908	222919870	26330751	108	111310											
C1orf65	164127	broad.mit.edu	37	chr1	223567913	223567913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagctggagaaggcgcgcGcccaggcagagcaccgaaaa	15	11	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223567913	T	T	223567913	3	4	118	1	0	0	0	0	1	0	0	0	2077	1087	38	3	1098	3	C1orf65	1	223567913	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	648043	223567913	25682708	109	111311											
EPHX1	2052	broad.mit.edu	37	chr1	226016497	226016497	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actggttcatctcccgggacAaagaggaaactttgccactt	9	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226016497	C	C	226016497	3	2	118	1	0	0	0	0	1	0	0	0	5221	131	5	5	69	5	EPHX1	1	226016497	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	2448584	226016497	23234124	110	111312											
PGBD5	79605	broad.mit.edu	37	chr1	230468556	230468556	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctcaaccaatccccgcgCgccccactgtgtcaatggcg	9	17	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230468556	T	T	230468556	1	4	118	0	1	0	0	0	0	0	0	0	11879	783	27	4		4	PGBD5	1	230468556	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4452059	230468556	18782065	111	111313											
ACTN2	88	broad.mit.edu	37	chr1	236902645	236902645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcccctggctggagaaccGgactcccgagaagaccatgc	12	14	0	3	rs112882610		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236902645	T	T	236902645	3	4	118	1	0	0	0	0	1	0	0	0	205	1116	39	1	958	1	ACTN2	1	236902645	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	6434089	236902645	12347976	112	111314											
WDR64	128025	broad.mit.edu	37	chr1	241901853	241901853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttaacctttttttaaaCtagcacttgagcactaacta	3	8	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241901853	A	A	241901853	1	1	118	0	1	0	0	0	0	0	0	0	17442	580	20	3		3	WDR64	1	241901853	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4999208	241901853	7348768	113	111315											
NLRP3	114548	broad.mit.edu	37	chr1	247607348	247607348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcactaatcagaatctcaCgcacctttacctgcgaggca	7	14	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247607348	A	A	247607348	3	1	118	1	0	0	0	0	1	0	0	0	10573	536	19	3	2770	3	NLRP3	1	247607348	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	5705495	247607348	1643273	114	111316											
OR2B11	127623	broad.mit.edu	37	chr1	247614966	247614966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcccagccagtggaagaCtgcatattgcacagtgcagc	11	12	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614966	A	A	247614966	3	1	118	1	0	0	0	0	1	0	0	0	11082	565	20	3	637	3	OR2B11	1	247614966	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	7618	247614966	1635655	115	111317											
OR2C3	81472	broad.mit.edu	37	chr1	247695852	247695852	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaaggccacctgtgggaaGagcacagggcatacagggca	14	10	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247695852	A	A	247695852	1	1	118	0	1	0	0	0	0	0	0	0	11087	957	33	4		4	OR2C3	1	247695852	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	80886	247695852	1554769	116	111318											
C1orf150	148823	broad.mit.edu	37	chr1	247737611	247737611	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagagacagaatatgcccTtcttaggacttctgttagta	9	8	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247737611	C	C	247737611	3	2	118	1	0	0	0	0	1	0	0	0	2024	1609	56	5	353	5	C1orf150	1	247737611	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	41759	247737611	1513010	117	111319											
TTC15	51112	broad.mit.edu	37	chr2	3447625	3447625	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggaacccacaggagtcgcTggatagactgcacaaggtga	15	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3447625	C	C	3447625	3	2	118	1	0	0	0	0	1	0	0	0	16808	1580	55	5	1511	5	TTC15	2	3447625	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08		3447625	239751748	118	111320											
NBAS	51594	broad.mit.edu	37	chr2	15696791	15696791	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcatactgagtttgccTgaatgtcagcaactttatca	7	9	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15696791	A	A	15696791	1	1	118	0	1	0	0	0	0	0	0	0	10280	1595	55	5		5	NBAS	2	15696791	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	12249166	15696791	227502582	119	111321											
WDR35	57539	broad.mit.edu	37	chr2	20137489	20137489	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtactcagggatgcctgcGccttcataacttaccttctg	9	12	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20137489	T	T	20137489	1	4	118	0	1	0	0	0	0	0	0	0	17416	1102	38	3		3	WDR35	2	20137489	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4440698	20137489	223061884	120	111322											
TCF23	150921	broad.mit.edu	37	chr2	27372190	27372190	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagctacccctggccctcgAgggaccagggctgggggcct	16	14	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27372190	T	T	27372190	2	4	118	1	0	0	0	0	0	0	0	1	15814	291	11	5		5	TCF23	2	27372190	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	7234701	27372190	215827183	121	111323											
SLC30A3	7781	broad.mit.edu	37	chr2	27478154	27478154	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgagcctcggcctggCagtggggtgagggcagggcc	22	10	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27478154	A	A	27478154	1	1	118	0	1	0	0	0	0	0	0	0	14670	725	25	3		3	SLC30A3	2	27478154	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	105964	27478154	215721219	122	111324											
GTF3C2	2976	broad.mit.edu	37	chr2	27558947	27558947	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaagaagggacgcagggCtgccagaggtaagctcccct	15	10	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27558947	A	A	27558947	1	1	118	0	1	0	0	0	0	0	0	0	6938	812	28	3		3	GTF3C2	2	27558947	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	80793	27558947	215640426	123	111325											
KRTCAP3	200634	broad.mit.edu	37	chr2	27666044	27666044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtggccaacggtggccGccgccttattgctgactgcc	12	15	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27666044	T	T	27666044	3	4	118	1	0	0	0	0	1	0	0	0	8651	1087	38	3	391	3	KRTCAP3	2	27666044	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	107097	27666044	215533329	124	111326											
FAM179A	165186	broad.mit.edu	37	chr2	29274652	29274652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtttacccccggaagcCtcaagctgtagagcggcatg	11	13	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29274652	A	A	29274652	3	1	118	1	0	0	0	0	1	0	0	0	5550	681	24	2	2827	2	FAM179A	2	29274652	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1608608	29274652	213924721	125	111327											
ALK	238	broad.mit.edu	37	chr2	29551229	29551229	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactcacggcacatctggctCtcatcttctccctgggcaca	7	16	5	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29551229	A	A	29551229	3	1	118	1	0	0	0	0	1	0	0	0	525	912	32	3	3557	3	ALK	2	29551229	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	276577	29551229	213648144	126	111328											
TTC27	55622	broad.mit.edu	37	chr2	33037799	33037799	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatcaaattatttcattatAttgacattgttgtatttaat	4	3	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33037799	G	G	33037799	1	3	118	0	1	0	0	0	0	0	0	0	16821	464	16	5		5	TTC27	2	33037799	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	3486570	33037799	210161574	127	111329											
VIT	5212	broad.mit.edu	37	chr2	37000953	37000953	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctctggtccactgccacCtacacaagcagccaaaacag	7	15	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37000953	T	T	37000953	2	4	118	1	0	0	0	0	0	0	0	1	17298	668	24	4		4	VIT	2	37000953	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	3963154	37000953	206198420	128	111330											
PLEKHH2	130271	broad.mit.edu	37	chr2	43921510	43921510	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccttgtatatttatggtaAaacatttccagaccattgag	7	7	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43921510	T	T	43921510	1	4	118	0	1	0	0	0	0	0	0	0	12172	29	1	5		5	PLEKHH2	2	43921510	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	6920557	43921510	199277863	129	111331											
EPCAM	4072	broad.mit.edu	37	chr2	47607038	47607038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgaattctcaatgcaggGtctaaaagctggtgttattg	10	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47607038	T	T	47607038	3	4	118	1	0	0	0	0	1	0	0	0	5204	1261	44	3	814	3	EPCAM	2	47607038	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3685528	47607038	195592335	130	111332											
ERLEC1	27248	broad.mit.edu	37	chr2	54045035	54045035	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttgttgttcttctttagGttgaatctccagtgatctgt	9	7	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54045035	A	A	54045035	3	1	118	1	0	0	0	0	1	0	0	0	5273	1275	44	4	1435	4	ERLEC1	2	54045035	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	6437997	54045035	189154338	131	111333											
PLEK	5341	broad.mit.edu	37	chr2	68621100	68621100	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagatctgtcagcagtttttCtttaatctccttctgctctt	5	10	6	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68621100	G	G	68621100	1	3	118	0	1	0	0	0	0	0	0	0	12148	928	32	4		4	PLEK	2	68621100	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	14576065	68621100	174578273	132	111334											
BMP10	27302	broad.mit.edu	37	chr2	69098254	69098254	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatgtactctggtgggtcCaccttggctgaatcctgcgt	11	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69098254	A	A	69098254	2	1	118	1	0	0	0	0	0	0	0	1	1463	581	21	2		2	BMP10	2	69098254	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	477154	69098254	174101119	133	111335											
DYSF	8291	broad.mit.edu	37	chr2	71778361	71778361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccaggcctgcatgcaGggtcttccagcccctcctgg	13	16	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71778361	T	T	71778361	1	4	118	0	1	0	0	0	0	0	0	0	4899	1015	35	2		2	DYSF	2	71778361	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2680107	71778361	171421012	134	111336											
C2orf3	6936	broad.mit.edu	37	chr2	75916057	75916057	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctaaatttcagctccgacTctaagggtaaggtatttaat	7	8	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75916057	A	A	75916057	1	1	118	0	1	0	0	0	0	0	0	0	2184	1566	54	5		5	C2orf3	2	75916057	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4137696	75916057	167283316	135	111337											
CNGA3	1261	broad.mit.edu	37	chr2	99008273	99008273	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgcccacaggtgggtggTccacgctccagaaacacacg	12	15	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99008273	G	G	99008273	1	3	118	0	1	0	0	0	0	0	0	0	3630	1682	58	5		5	CNGA3	2	99008273	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	23092216	99008273	144191100	136	111338											
NMS	129521	broad.mit.edu	37	chr2	101093867	101093867	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggaggcaacacatccagtTaaaactggggtcagtatttt	10	8	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101093867	A	A	101093867	2	1	118	1	0	0	0	0	0	0	0	1	10597	1741	61	5		5	NMS	2	101093867	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	2085594	101093867	142105506	137	111339											
IL1RL1	9173	broad.mit.edu	37	chr2	102964544	102964544	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagctaaaccttacaagacTaggaatggtaagtggcaaat	9	6	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102964544	A	A	102964544	2	1	118	1	0	0	0	0	0	0	0	1	7733	1509	53	5		5	IL1RL1	2	102964544	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	1870677	102964544	140234829	138	111340											
SLC9A4	389015	broad.mit.edu	37	chr2	103095197	103095197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctgaggctgagatgccaGtcagcttgtccacggtcctg	13	12	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103095197	T	T	103095197	1	4	118	0	1	0	0	0	0	0	0	0	14830	1044	36	3		3	SLC9A4	2	103095197	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	130653	103095197	140104176	139	111341											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204319	125204319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcatcttgcctctctccCctcttcacaggtgacagcaa	5	16	5	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125204319	A	A	125204319	1	1	118	0	1	0	0	0	0	0	0	0	3682	638	22	2		2	CNTNAP5	2	125204319	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	22109122	125204319	117995054	140	111342											
MYO7B	4648	broad.mit.edu	37	chr2	128341985	128341985	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgggaaactccatttGggtgggccacttgttctgag	15	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128341985	C	C	128341985	1	2	118	0	1	0	0	0	0	0	0	0	10177	1363	47	4		4	MYO7B	2	128341985	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3137666	128341985	114857388	141	111343											
HS6ST1	9394	broad.mit.edu	37	chr2	129026217	129026217	+	Frame_Shift_Del	DEL	C	-	-													ggctcaggtcggccagcatgCgcacctggcggttgttggcc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129026217	-	-	129026217	7	5	118	1	0	1	0	1	0	0	0	0	7437	768	27	0	484	0	HS6ST1	2	129026217	Frame_Shift_Del	DEL	C	TCGA-44-4112-01A-01D-1458-08	684232	129026217	114173156	142	111344											
POTEF	728378	broad.mit.edu	37	chr2	130878106	130878106	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catctgcttttaacagccagGagaagccagtagtagccaac	9	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130878106	A	A	130878106	1	1	118	0	1	0	0	0	0	0	0	0	12361	1189	41	4		4	POTEF	2	130878106	5'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	1851889	130878106	112321267	143	111345											
SMPD4	55627	broad.mit.edu	37	chr2	130910224	130910224	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgtgcatgggaggggCccgacgcagaacagagaggc	18	10	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130910224	T	T	130910224	2	4	118	1	0	0	0	0	0	0	0	1	14921	726	26	4		4	SMPD4	2	130910224	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	32118	130910224	112289149	144	111346											
PLEKHB2	55041	broad.mit.edu	37	chr2	131936515	131936515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagttctcagcccgggacGgcatggccagccagtcgcca	12	15	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131936515	T	T	131936515	1	4	118	0	1	0	0	0	0	0	0	0	12160	1131	39	1		1	PLEKHB2	2	131936515	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1026291	131936515	111262858	145	111347											
PLEKHB2	55041	broad.mit.edu	37	chr2	131951656	131951656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggttgagtaaaaaaacCactattcccatttacctgtt	7	9	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131951656	A	A	131951656	1	1	118	0	1	0	0	0	0	0	0	0	12160	609	21	2		2	PLEKHB2	2	131951656	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	15141	131951656	111247717	146	111348											
LRP1B	53353	broad.mit.edu	37	chr2	141283979	141283979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgactccttgcttttaCattttgaatatttcaattat	4	6	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141283979	A	A	141283979	1	1	118	0	1	0	0	0	0	0	0	0	9042	493	17	3		3	LRP1B	2	141283979	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	9332323	141283979	101915394	147	111349											
LRP1B	53353	broad.mit.edu	37	chr2	141571477	141571477	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaaaataagttgaaagttCagatttttgtctttacaaat	5	3	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141571477	G	G	141571477	1	3	118	0	1	0	0	0	0	0	0	0	9042	841	29	4		4	LRP1B	2	141571477	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	287498	141571477	101627896	148	111350											
LRP1B	53353	broad.mit.edu	37	chr2	141665515	141665515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtttctctggctgcaGgcagactgaggtgtcattag	14	8	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141665515	T	T	141665515	3	4	118	1	0	0	0	0	1	0	0	0	9042	991	35	2	10628	2	LRP1B	2	141665515	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	94038	141665515	101533858	149	111351											
NEB	4703	broad.mit.edu	37	chr2	152581900	152581900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagcacatatttagagCccacaattcccagcagtagg	7	13	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152581900	A	A	152581900	1	1	118	0	1	0	0	0	0	0	0	0	10397	754	26	3		3	NEB	2	152581900	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	10916385	152581900	90617473	150	111352											
UPP2	151531	broad.mit.edu	37	chr2	158980311	158980311	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttttccagagaaaaaaagTtagactacttgaagagagca	8	7	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158980311	A	A	158980311	3	1	118	1	0	0	0	0	1	0	0	0	17139	1722	60	5	916	5	UPP2	2	158980311	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	6398411	158980311	84219062	151	111353											
SCN1A	6323	broad.mit.edu	37	chr2	166866192	166866192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatttagtttaattttggCtatatacaatacttcaggtt	5	4	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166866192	A	A	166866192	1	1	118	0	1	0	0	0	0	0	0	0	14027	812	28	3		3	SCN1A	2	166866192	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	7885881	166866192	76333181	152	111354											
XIRP2	129446	broad.mit.edu	37	chr2	168099691	168099691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatggctctcctgatgaaGgtgatatttccaggggcatt	11	8	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168099691	T	T	168099691	3	4	118	1	0	0	0	0	1	0	0	0	17557	1000	35	2	1819	2	XIRP2	2	168099691	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1233499	168099691	75099682	153	111355											
ATP5G3	518	broad.mit.edu	37	chr2	176049251	176049251	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccggtttggttttattgtActaacaacctcagctggtat	10	8	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176049251	T	T	176049251	1	4	118	0	1	0	0	0	0	0	0	0	1159	406	14	5		5	ATP5G3	2	176049251	5'Flank	SNP	A	TCGA-44-4112-01A-01D-1458-08	7949560	176049251	67150122	154	111356											
PRKRA	8575	broad.mit.edu	37	chr2	179307987	179307987	+	Intron	DEL	T	-	-													atgcctttaattgtaagaaaTaagtaccagtttccataaat							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179307987	-	-	179307987	6	5	118	0	1	1	0	1	0	0	0	0	12630	1421	49	0		0	PRKRA	2	179307987	Intron	DEL	T	TCGA-44-4112-01A-01D-1458-08	3258736	179307987	63891386	155	111357											
TTN	7273	broad.mit.edu	37	chr2	179398197	179398197	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccagacactctgatctcaAagcagacactttggccttct	7	13	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179398197	G	G	179398197	3	3	118	1	0	0	0	0	1	0	0	0	16861	14	1	5	4854	5	TTN	2	179398197	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	90210	179398197	63801176	156	111358											
TTN	7273	broad.mit.edu	37	chr2	179572217	179572217	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaacatgagtggttgctGgcttgagctgcataatactt	10	6	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179572217	A	A	179572217	1	1	118	0	1	0	0	0	0	0	0	0	16861	1363	47	4		4	TTN	2	179572217	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	174020	179572217	63627156	157	111359											
TTN	7273	broad.mit.edu	37	chr2	179629388	179629388	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatcatgaagaaatttgCacttgaagccagtggaaagc	10	9	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179629388	A	A	179629388	3	1	118	1	0	0	0	0	1	0	0	0	16861	710	25	3	101418	3	TTN	2	179629388	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	57171	179629388	63569985	158	111360											
TTN	7273	broad.mit.edu	37	chr2	179642042	179642042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggttttacctgatgttccaCagctgaaagagaaaggtcat	10	8	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179642042	A	A	179642042	3	1	118	1	0	0	0	0	1	0	0	0	16861	478	17	3	106684	3	TTN	2	179642042	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	12654	179642042	63557331	159	111361											
NCKAP1	10787	broad.mit.edu	37	chr2	183889670	183889670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactgatctgaaagcgggCaagcgggcagagggaaggtg	18	6	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183889670	A	A	183889670	1	1	118	0	1	0	0	0	0	0	0	0	10316	725	25	3		3	NCKAP1	2	183889670	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4247628	183889670	59309703	160	111362											
ITGAV	3685	broad.mit.edu	37	chr2	187529427	187529427	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggatcttattaacattaatGagctgttcccctatttagtg	7	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187529427	A	A	187529427	1	1	118	0	1	0	0	0	0	0	0	0	7958	1305	45	4		4	ITGAV	2	187529427	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3639757	187529427	55669946	161	111363											
COL3A1	1281	broad.mit.edu	37	chr2	189875383	189875383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctattacagtttagctacGgcaatcctgaacttcctgaa	6	12	0	2	rs140646380	byFrequency	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189875383	T	T	189875383	3	4	118	1	0	0	0	0	1	0	0	0	3720	1116	39	1	4219	1	COL3A1	2	189875383	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2345956	189875383	53323990	162	111364											
STAT1	6772	broad.mit.edu	37	chr2	191841713	191841713	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagtaacagcagaaagttCtttcttcgtgtagggttcaa	10	6	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191841713	T	T	191841713	3	4	118	1	0	0	0	0	1	0	0	0	15382	922	32	4	360	4	STAT1	2	191841713	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1966330	191841713	51357660	163	111365											
MYO1B	4430	broad.mit.edu	37	chr2	192257838	192257838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggaagcaacgcctggagGacttggccactctcattcag	12	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192257838	T	T	192257838	3	4	118	1	0	0	0	0	1	0	0	0	10163	1174	41	3	2190	3	MYO1B	2	192257838	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	416125	192257838	50941535	164	111366											
SDPR	8436	broad.mit.edu	37	chr2	192711133	192711133	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcaagaatgataaggagttCcagcccgcctgtaaggaggc	12	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192711133	A	A	192711133	1	1	118	0	1	0	0	0	0	0	0	0	14083	870	30	3		3	SDPR	2	192711133	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	453295	192711133	50488240	165	111367											
DNAH7	56171	broad.mit.edu	37	chr2	196718076	196718076	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcccttacctgtctataGgtggatgtgaaggctccgag	13	9	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196718076	T	T	196718076	2	4	118	1	0	0	0	0	0	0	0	1	4646	987	35	2		2	DNAH7	2	196718076	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	4006943	196718076	46481297	166	111368											
MOBKL3	25843	broad.mit.edu	37	chr2	198398651	198398651	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taataaaatcaggtacaactCtaagaggagacattggaaaa	8	5	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198398651	G	G	198398651	1	3	118	0	1	0	0	0	0	0	0	0	9781	928	32	4		4	MOBKL3	2	198398651	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1680575	198398651	44800722	167	111369											
PLCL1	5334	broad.mit.edu	37	chr2	198950213	198950213	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagtaacttgaatccacagGacttttggaattgtggctgt	10	8	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198950213	C	C	198950213	3	2	118	1	0	0	0	0	1	0	0	0	12134	1174	41	4	1978	4	PLCL1	2	198950213	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	551562	198950213	44249160	168	111370											
AOX1	316	broad.mit.edu	37	chr2	201533401	201533401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaactgaattattctcccCagggcattctgcacactcgt	8	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201533401	A	A	201533401	3	1	118	1	0	0	0	0	1	0	0	0	731	595	21	2	3803	2	AOX1	2	201533401	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	2583188	201533401	41665972	169	111371											
CASP10	843	broad.mit.edu	37	chr2	202068563	202068563	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catatttgatatataccaagGaattcaaggtgacttggaag	9	5	1	2	rs41322747	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202068563	T	T	202068563	1	4	118	0	1	0	0	0	0	0	0	0	2695	1189	41	3		3	CASP10	2	202068563	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	535162	202068563	41130810	170	111372											
ALS2CR11	151254	broad.mit.edu	37	chr2	202436667	202436667	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacttaaaacacttacgtcAcgggatctgttctttctgga	8	9	4	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202436667	G	G	202436667	3	3	118	1	0	0	0	0	1	0	0	0	552	159	6	5	4815	5	ALS2CR11	2	202436667	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	368104	202436667	40762706	171	111373											
ALS2CR11	151254	broad.mit.edu	37	chr2	202483879	202483879	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttctgcggcctgtctgCgcccaaccgacggcccgcta	10	18	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202483879	A	A	202483879	1	1	118	0	1	0	0	0	0	0	0	0	552	783	27	3		3	ALS2CR11	2	202483879	5'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	47212	202483879	40715494	172	111374											
NBEAL1	65065	broad.mit.edu	37	chr2	204009250	204009250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattctgaatccacagagCcaggcagaacttgtgctttc	8	10	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204009250	A	A	204009250	1	1	118	0	1	0	0	0	0	0	0	0	10282	754	26	3		3	NBEAL1	2	204009250	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1525371	204009250	39190123	173	111375											
PARD3B	117583	broad.mit.edu	37	chr2	206418005	206418005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcattgtcagtaaccaagGtgtataatggatcttcatct	8	7	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206418005	T	T	206418005	1	4	118	0	1	0	0	0	0	0	0	0	11538	1276	44	3		3	PARD3B	2	206418005	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2408755	206418005	36781368	174	111376											
NDUFS1	4719	broad.mit.edu	37	chr2	207003266	207003266	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaattttgggggagtctccCaggtggtcatatgtgtaagt	14	5	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207003266	A	A	207003266	2	1	118	1	0	0	0	0	0	0	0	1	10386	581	21	2		2	NDUFS1	2	207003266	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	585261	207003266	36196107	175	111377											
CPO	130749	broad.mit.edu	37	chr2	207822920	207822920	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctcttgaaaccacagagtgGagtgaaaaaggaacctctag	10	9	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207822920	C	C	207822920	1	2	118	0	1	0	0	0	0	0	0	0	3852	1189	41	4		4	CPO	2	207822920	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	819654	207822920	35376453	176	111378											
ERBB4	2066	broad.mit.edu	37	chr2	212529880	212529880	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatttaagggtgtacaaagTtgattccataaatcattctc	6	6	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212529880	A	A	212529880	1	1	118	0	1	0	0	0	0	0	0	0	5251	1740	60	5		5	ERBB4	2	212529880	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4706960	212529880	30669493	177	111379											
ERBB4	2066	broad.mit.edu	37	chr2	212578346	212578346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactagggcaggcacgcacaCaagaactggaatctaccaca	9	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212578346	A	A	212578346	3	1	118	1	0	0	0	0	1	0	0	0	5251	478	17	3	3099	3	ERBB4	2	212578346	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	48466	212578346	30621027	178	111380											
FEV	54738	broad.mit.edu	37	chr2	219846816	219846816	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcggctcagcttgtcgtagTtcatgttgggcttgctcttg	13	10	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219846816	A	A	219846816	3	1	118	1	0	0	0	0	1	0	0	0	5879	1725	60	5	430	5	FEV	2	219846816	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	7268470	219846816	23352557	179	111381											
PTPRN	5798	broad.mit.edu	37	chr2	220161453	220161453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggggcagaggtgggggctGgagtcagggccactcacaat	18	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220161453	T	T	220161453	1	4	118	0	1	0	0	0	0	0	0	0	12915	1363	47	2		2	PTPRN	2	220161453	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	314637	220161453	23037920	180	111382											
MRPL44	65080	broad.mit.edu	37	chr2	224831531	224831531	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataactgctttgtgtactgTcttacaatattccatgtaat	5	7	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224831531	G	G	224831531	1	3	118	0	1	0	0	0	0	0	0	0	9902	1682	58	5		5	MRPL44	2	224831531	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4670078	224831531	18367842	181	111383											
TRIP12	9320	broad.mit.edu	37	chr2	230672375	230672375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccattccatccctacaccCactctccaacaaaatagaca	1	19	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230672375	A	A	230672375	1	1	118	0	1	0	0	0	0	0	0	0	16681	609	21	2		2	TRIP12	2	230672375	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	5840844	230672375	12526998	182	111384											
SP140	11262	broad.mit.edu	37	chr2	231102058	231102058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaatgagcaggctaaagGgcctcctgtgagtggggacc	15	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231102058	T	T	231102058	1	4	118	0	1	0	0	0	0	0	0	0	15076	1247	43	2		2	SP140	2	231102058	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	429683	231102058	12097315	183	111385											
HTR2B	3357	broad.mit.edu	37	chr2	231988653	231988653	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgagcgcatacacacAtctgtccatgtttgtaggta	8	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231988653	T	T	231988653	1	4	118	0	1	0	0	0	0	0	0	0	7512	232	8	5		5	HTR2B	2	231988653	5'UTR	SNP	A	TCGA-44-4112-01A-01D-1458-08	886595	231988653	11210720	184	111386											
UGT1A5	54579	broad.mit.edu	37	chr2	234628348	234628348	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcaggtctgtattggtgcCttcatccaatcaatgttcca	7	11	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234628348	T	T	234628348	1	4	118	0	1	0	0	0	0	0	0	0	17074	696	24	4		4	UGT1A5	2	234628348	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2639695	234628348	8571025	185	111387											
TRPM8	79054	broad.mit.edu	37	chr2	234873222	234873222	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaaaaggaaaaaaaagaatta							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	234873222	-	-	234873222	6	5	118	0	1	1	0	1	0	0	0	0	16717	957	33	0		0	TRPM8	2	234873222	Intron	DEL	G	TCGA-44-4112-01A-01D-1458-08	244874	234873222	8326151	186	111388											
SPP2	6694	broad.mit.edu	37	chr2	234975853	234975853	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagtcttgtcttatgattAttactgtgttacaggtctca	9	6	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234975853	T	T	234975853	1	4	118	0	1	0	0	0	0	0	0	0	15205	464	16	5		5	SPP2	2	234975853	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	102631	234975853	8223520	187	111389											
ESPNL	339768	broad.mit.edu	37	chr2	239040032	239040032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagcacctgggcacccacGgctgggaggctgtgcgcgcc	16	15	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239040032	T	T	239040032	3	4	118	1	0	0	0	0	1	0	0	0	5297	1116	39	1	2711	1	ESPNL	2	239040032	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	4064179	239040032	4159341	188	111390											
SEPT2	4735	broad.mit.edu	37	chr2	242283469	242283469	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtggtgtggggctgttgcaGattggtgctgagaaccctca	16	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242283469	T	T	242283469	1	4	118	0	1	0	0	0	0	0	0	0	14177	957	33	3		3	SEPT2	2	242283469	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3243437	242283469	915904	189	111391											
SUMF1	285362	broad.mit.edu	37	chr3	4025532	4025532	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaagttcattaataccatCtactgctaacagattacaca	3	10	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4025532	A	A	4025532	1	1	118	0	1	0	0	0	0	0	0	0	15503	928	32	3		3	SUMF1	3	4025532	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08		4025532	193996898	190	111392											
SETMAR	6419	broad.mit.edu	37	chr3	4358118	4358118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccatcagaagttgacaacGaccagttgagagcaatcatc	10	10	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4358118	T	T	4358118	3	4	118	1	0	0	0	0	1	0	0	0	14253	1058	37	3	1253	3	SETMAR	3	4358118	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	332586	4358118	193664312	191	111393											
GRM7	2917	broad.mit.edu	37	chr3	7456997	7456997	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagaaaatggaacaggagCatacgtcttgcaggacaaaa	10	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7456997	A	A	7456997	1	1	118	0	1	0	0	0	0	0	0	0	6868	725	25	3		3	GRM7	3	7456997	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3098879	7456997	190565433	192	111394											
RAD18	56852	broad.mit.edu	37	chr3	8932031	8932031	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcatagaagtataatttctCaggtcaaagtgcatgcttat	8	6	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8932031	G	G	8932031	1	3	118	0	1	0	0	0	0	0	0	0	13088	841	29	4		4	RAD18	3	8932031	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1475034	8932031	189090399	193	111395											
OGG1	4968	broad.mit.edu	37	chr3	9791931	9791931	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgacgaggcctggttctGggtaggcggggctactacgg	18	10	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9791931	T	T	9791931	1	4	118	0	1	0	0	0	0	0	0	0	10940	1363	47	2		2	OGG1	3	9791931	5'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	859900	9791931	188230499	194	111396											
FANCD2	2177	broad.mit.edu	37	chr3	10107451	10107451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcaaatatgagttaaaGgggaaagtaaatagcaagga	11	4	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10107451	T	T	10107451	1	4	118	0	1	0	0	0	0	0	0	0	5722	1015	35	2		2	FANCD2	3	10107451	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	315520	10107451	187914979	195	111397											
C3orf20	84077	broad.mit.edu	37	chr3	14813428	14813428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcatgtcactgggtcCccaaggaggtcagagtctcc	11	14	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14813428	A	A	14813428	1	1	118	0	1	0	0	0	0	0	0	0	2235	638	22	2		2	C3orf20	3	14813428	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4705977	14813428	183209002	196	111398											
TBC1D5	9779	broad.mit.edu	37	chr3	17469948	17469948	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tattcatcacctacctatagGaattaaaagtcccttcagag	5	10	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17469948	A	A	17469948	3	1	118	1	0	0	0	0	1	0	0	0	15745	1174	41	4	2372	4	TBC1D5	3	17469948	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2656520	17469948	180552482	197	111399											
TOP2B	7155	broad.mit.edu	37	chr3	25674336	25674336	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctgtattgttaaagtagCaaaatactttatctgtatta	5	5	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25674336	T	T	25674336	1	4	118	0	1	0	0	0	0	0	0	0	16490	725	25	4		4	TOP2B	3	25674336	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	8204388	25674336	172348094	198	111400											
GLB1	2720	broad.mit.edu	37	chr3	33038875	33038875	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaccatcaaccccagatgCaccgaaagccctgaggaagg	10	13	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33038875	A	A	33038875	1	1	118	0	1	0	0	0	0	0	0	0	6491	725	25	3		3	GLB1	3	33038875	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	7364539	33038875	164983555	199	111401											
DLEC1	9940	broad.mit.edu	37	chr3	38159209	38159209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagcccaaatcccctccCccagccctcccagccctacc	4	24	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38159209	A	A	38159209	1	1	118	0	1	0	0	0	0	0	0	0	4592	638	22	2		2	DLEC1	3	38159209	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	5120334	38159209	159863221	200	111402											
SCN10A	6336	broad.mit.edu	37	chr3	38755298	38755298	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtagtgatttttgtactttTagcagagacagggtttcggc	13	5	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38755298	A	A	38755298	1	1	118	0	1	0	0	0	0	0	0	0	14025	1769	61	5		5	SCN10A	3	38755298	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	596089	38755298	159267132	201	111403											
CTNNB1	1499	broad.mit.edu	37	chr3	41274850	41274850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtggaatgcaagctttagGacttcacctgacagatccaa	10	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41274850	T	T	41274850	3	4	118	1	0	0	0	0	1	0	0	0	4050	1174	41	3	1126	3	CTNNB1	3	41274850	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2519552	41274850	156747580	202	111404											
ZBTB47	92999	broad.mit.edu	37	chr3	42703101	42703101	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagttctacaccatggCccacgtgcgtaagcacatgg	11	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42703101	T	T	42703101	3	4	118	1	0	0	0	0	1	0	0	0	17674	739	26	4	1604	4	ZBTB47	3	42703101	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1428251	42703101	155319329	203	111405											
SMARCC1	6599	broad.mit.edu	37	chr3	47663809	47663809	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaccagggacttgatctttCtttcttccactgcagccagg	8	13	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47663809	G	G	47663809	3	3	118	1	0	0	0	0	1	0	0	0	14889	913	32	4	664	4	SMARCC1	3	47663809	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	4960708	47663809	150358621	204	111406											
FBXW12	285231	broad.mit.edu	37	chr3	48420061	48420061	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaccaaaaaatcaaatgccTgttgtcttgtcaggcatccg	9	10	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48420061	A	A	48420061	1	1	118	0	1	0	0	0	0	0	0	0	5822	1595	55	5		5	FBXW12	3	48420061	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	756252	48420061	149602369	205	111407											
COL7A1	1294	broad.mit.edu	37	chr3	48614643	48614643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtctaagggtgtgcctgCataggcctgctcaccccaac	10	14	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48614643	A	A	48614643	1	1	118	0	1	0	0	0	0	0	0	0	3736	725	25	3		3	COL7A1	3	48614643	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	194582	48614643	149407787	206	111408											
BSN	8927	broad.mit.edu	37	chr3	49691797	49691797	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacaacacctccgagtgtgtCtcagctgcccccagagccac	9	17	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49691797	T	T	49691797	3	4	118	1	0	0	0	0	1	0	0	0	1539	913	32	4	4826	4	BSN	3	49691797	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1077154	49691797	148330633	207	111409											
RBM6	10180	broad.mit.edu	37	chr3	50102346	50102346	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgatctcctgacgttgtgatCcacctgccttgacctcccag	8	16	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50102346	T	T	50102346	1	4	118	0	1	0	0	0	0	0	0	0	13252	870	30	4		4	RBM6	3	50102346	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	410549	50102346	147920084	208	111410											
DOCK3	1795	broad.mit.edu	37	chr3	51197942	51197942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggtgatactggagaggaGcatgcttttctcagtctgac	12	7	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51197942	T	T	51197942	1	4	118	0	1	0	0	0	0	0	0	0	4728	986	34	3		3	DOCK3	3	51197942	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1095596	51197942	146824488	209	111411											
POC1A	25886	broad.mit.edu	37	chr3	52184965	52184966	+	Intron	DNP	CC	AT	AT													tctgcttcccacccaccaccCctccgaggtaaaaacttggc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	52184966	AT	AT	52184965	1	1	118	0	1	0	0	0	0	0	0	0	12270	638	22	2		2	POC1A	3	52184965	Intron	DNP	CC	TCGA-44-4112-01A-01D-1458-08	987023	52184965	145837465	210	111412											
STAB1	23166	broad.mit.edu	37	chr3	52550806	52550806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagccacacggatgcccaGggccctccctgaaattttgg	10	15	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52550806	T	T	52550806	1	4	118	0	1	0	0	0	0	0	0	0	15355	1015	35	2		2	STAB1	3	52550806	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	365841	52550806	145471624	211	111413											
SUCLG2	8801	broad.mit.edu	37	chr3	67571122	67571122	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttctacttggaaatctaTacaaacttgctacacgaatc	5	9	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67571122	C	C	67571122	1	2	118	0	1	0	0	0	0	0	0	0	15483	1421	49	5		5	SUCLG2	3	67571122	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	15020316	67571122	130451308	212	111414											
PDZRN3	23024	broad.mit.edu	37	chr3	73433097	73433098	+	Frame_Shift_Ins	INS	-	A	A													tagtgctgggcgtgcgccggINSgatgtgcgcgtgcttgtatg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73433098	A	A	73433097	7	5	118	1	0	1	1	0	0	0	0	0	11803	1232	43	0	584	0	PDZRN3	3	73433097	Frame_Shift_Ins	INS	-	TCGA-44-4112-01A-01D-1458-08	5861975	73433097	124589333	213	111415											
ROBO2	6092	broad.mit.edu	37	chr3	77623840	77623840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atattttaatgagttccaagGaatggatagtgaatctaaaa	8	3	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77623840	T	T	77623840	3	4	118	1	0	0	0	0	1	0	0	0	13625	1174	41	3	2218	3	ROBO2	3	77623840	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	4190743	77623840	120398590	214	111416											
VGLL3	389136	broad.mit.edu	37	chr3	87017756	87017756	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacctgtatcgaatcccacGctgggcactatgtctactgt	8	12	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87017756	C	C	87017756	3	2	118	1	0	0	0	0	1	0	0	0	17287	1078	38	4	67	4	VGLL3	3	87017756	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	9393916	87017756	111004674	215	111417											
C3orf38	285237	broad.mit.edu	37	chr3	88202662	88202662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattctgaacctttgttctGtctgaaactttgttgataat	7	6	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88202662	T	T	88202662	1	4	118	0	1	0	0	0	0	0	0	0	2250	1392	48	3		3	C3orf38	3	88202662	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1184906	88202662	109819768	216	111418											
EPHA3	2042	broad.mit.edu	37	chr3	89391035	89391035	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatatgtaaaaaatgtggGtggaatataaaacagtgtga	10	2	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89391035	T	T	89391035	2	4	118	1	0	0	0	0	0	0	0	1	5210	1248	44	3		3	EPHA3	3	89391035	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	1188373	89391035	108631395	217	111419											
FILIP1L	11259	broad.mit.edu	37	chr3	99567728	99567728	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcggtatcactgcagtactcGtgtaagagtgaggactctct	11	9	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99567728	C	C	99567728	3	2	118	1	0	0	0	0	1	0	0	0	5952	1145	40	4	644	4	FILIP1L	3	99567728	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	10176693	99567728	98454702	218	111420											
GPR128	84873	broad.mit.edu	37	chr3	100328780	100328780	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactggcatcattttgggacTgggcatctggaggattgtga	15	6	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100328780	A	A	100328780	3	1	118	1	0	0	0	0	1	0	0	0	6706	1580	55	5	82	5	GPR128	3	100328780	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	761052	100328780	97693650	219	111421											
GRAMD1C	54762	broad.mit.edu	37	chr3	113623284	113623284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttagtagcagagattatgtGggaaaatatgtggttttgtt	13	1	0	1	rs143493664	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113623284	A	A	113623284	1	1	118	0	1	0	0	0	0	0	0	0	6815	1363	47	4		4	GRAMD1C	3	113623284	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	13294504	113623284	84399146	220	111422											
ARHGAP31	57514	broad.mit.edu	37	chr3	119013643	119013643	+	5'UTR	DEL	C	-	-													tcttccatcttccgatgcggCcccccagagccgcggggcag							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119013643	-	-	119013643	6	5	118	0	1	1	0	1	0	0	0	0	882	754	26	0		0	ARHGAP31	3	119013643	5'UTR	DEL	C	TCGA-44-4112-01A-01D-1458-08	5390359	119013643	79008787	221	111423											
C3orf15	89876	broad.mit.edu	37	chr3	119452196	119452196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggatactaaaaacatgtGcttccttcccataggattag	7	9	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119452196	T	T	119452196	1	4	118	0	1	0	0	0	0	0	0	0	2231	1334	46	3		3	C3orf15	3	119452196	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	438553	119452196	78570234	222	111424											
STXBP5L	9515	broad.mit.edu	37	chr3	120973837	120973837	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgtgaaattgtagaggaaGacccatttgccattcagatg	10	7	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120973837	T	T	120973837	3	4	118	1	0	0	0	0	1	0	0	0	15475	942	33	3	1595	3	STXBP5L	3	120973837	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1521641	120973837	77048593	223	111425											
CASR	846	broad.mit.edu	37	chr3	121972965	121972965	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagggagtgaactgctcCaagggagaaacttctgggag	15	8	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121972965	T	T	121972965	1	4	118	0	1	0	0	0	0	0	0	0	2708	609	21	4		4	CASR	3	121972965	5'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	999128	121972965	76049465	224	111426											
CASR	846	broad.mit.edu	37	chr3	122002901	122002901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcctggtgaaaaccaaCcgtgtcctcctggtgtttga	10	11	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122002901	A	A	122002901	3	1	118	1	0	0	0	0	1	0	0	0	2708	506	18	3	2152	3	CASR	3	122002901	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	29936	122002901	76019529	225	111427											
SEMA5B	54437	broad.mit.edu	37	chr3	122631831	122631831	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccgggagcaggacgaccAcgggccccaggcggcccagc	16	17	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122631831	G	G	122631831	3	3	118	1	0	0	0	0	1	0	0	0	14151	159	6	5	895	5	SEMA5B	3	122631831	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	628930	122631831	75390599	226	111428											
KALRN	8997	broad.mit.edu	37	chr3	124052943	124052943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctctgccctccaccagGccggaggatgggccccatgg	14	16	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124052943	T	T	124052943	1	4	118	0	1	0	0	0	0	0	0	0	8045	1218	42	3		3	KALRN	3	124052943	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1421112	124052943	73969487	227	111429											
CCDC37	348807	broad.mit.edu	37	chr3	126138879	126138879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaggtgagctgccgcccCcagcctgaggaggagcctgg	15	14	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126138879	A	A	126138879	1	1	118	0	1	0	0	0	0	0	0	0	2836	638	22	2		2	CCDC37	3	126138879	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2085936	126138879	71883551	228	111430											
COL6A6	131873	broad.mit.edu	37	chr3	130289563	130289563	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgcacagcatgatcccCttggagagaaaacactagca	8	11	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130289563	T	T	130289563	1	4	118	0	1	0	0	0	0	0	0	0	3735	696	24	4		4	COL6A6	3	130289563	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4150684	130289563	67732867	229	111431											
NUDT16	131870	broad.mit.edu	37	chr3	131101022	131101022	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggctgccgctttccgcgtgGagcgcactgactaccgcagc	13	16	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131101022	A	A	131101022	3	1	118	1	0	0	0	0	1	0	0	0	10827	1175	41	4	277	4	NUDT16	3	131101022	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	811459	131101022	66921408	230	111432											
TF	7018	broad.mit.edu	37	chr3	133418347	133418347	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctttgcctgaacaacacCcagaagctggtagttggata	10	10	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133418347	T	T	133418347	1	4	118	0	1	0	0	0	0	0	0	0	15908	638	22	4		4	TF	3	133418347	5'Flank	SNP	C	TCGA-44-4112-01A-01D-1458-08	2317325	133418347	64604083	231	111433											
RBP2	5948	broad.mit.edu	37	chr3	139181188	139181188	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagccagactcattcattTcgttaacaagaccaaacatt	4	12	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139181188	A	A	139181188	1	1	118	0	1	0	0	0	0	0	0	0	13264	1798	62	5		5	RBP2	3	139181188	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	5762841	139181188	58841242	232	111434											
SR140	23350	broad.mit.edu	37	chr3	142757772	142757772	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggaattatttgaccagcAtgaagaatcagaagaagaag	11	4	1	6			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142757772	G	G	142757772	3	3	118	1	0	0	0	0	1	0	0	0	15249	217	8	5	2444	5	SR140	3	142757772	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	3576584	142757772	55264658	233	111435											
MED12L	116931	broad.mit.edu	37	chr3	150834277	150834277	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgaaaaagtgtgtataTgtgacacccttaataatcac	6	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150834277	C	C	150834277	1	2	118	0	1	0	0	0	0	0	0	0	9522	1479	51	5		5	MED12L	3	150834277	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	8076505	150834277	47188153	234	111436											
GFM1	85476	broad.mit.edu	37	chr3	158409367	158409367	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagaaattctgagcccaGgaagcgggctcttctttctt	9	10	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158409367	T	T	158409367	1	4	118	0	1	0	0	0	0	0	0	0	6405	1015	35	2		2	GFM1	3	158409367	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	7575090	158409367	39613063	235	111437											
SCHIP1	29970	broad.mit.edu	37	chr3	158787130	158787130	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgcctcacattcccccaCagtcacattgcgctctgtga	6	17	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158787130	A	A	158787130	1	1	118	0	1	0	0	0	0	0	0	0	14017	493	17	3		3	SCHIP1	3	158787130	5'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	377763	158787130	39235300	236	111438											
SCHIP1	29970	broad.mit.edu	37	chr3	158991564	158991564	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttcaaagccaatttgaatAaacaactcttccctctcaaa	2	12	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158991564	T	T	158991564	1	4	118	0	1	0	0	0	0	0	0	0	14017	377	13	5		5	SCHIP1	3	158991564	5'UTR	SNP	A	TCGA-44-4112-01A-01D-1458-08	204434	158991564	39030866	237	111439											
SI	6476	broad.mit.edu	37	chr3	164733862	164733862	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagtcaatgtctgtgtactGaacatcctgaaatatccaaa	7	8	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164733862	C	C	164733862	3	2	118	1	0	0	0	0	1	0	0	0	14410	1299	45	4	1785	4	SI	3	164733862	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	5742298	164733862	33288568	238	111440											
SI	6476	broad.mit.edu	37	chr3	164748367	164748367	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcctgtcagagatgctaActtcaaattccaaatgatta	6	8	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164748367	G	G	164748367	1	3	118	0	1	0	0	0	0	0	0	0	14410	58	2	5		5	SI	3	164748367	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	14505	164748367	33274063	239	111441											
SERPINI2	5276	broad.mit.edu	37	chr3	167164355	167164355	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataatacattttgtagacagGaaaagtcattttgtgtaagg	9	3	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167164355	A	A	167164355	1	1	118	0	1	0	0	0	0	0	0	0	14232	1189	41	4		4	SERPINI2	3	167164355	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2415988	167164355	30858075	240	111442											
MECOM	2122	broad.mit.edu	37	chr3	168840409	168840409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtgctttccactgtcatGtgacatctggtggcgaatta	10	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168840409	T	T	168840409	3	4	118	1	0	0	0	0	1	0	0	0	9515	1377	48	3	2833	3	MECOM	3	168840409	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1676054	168840409	29182021	241	111443											
SAMD7	344658	broad.mit.edu	37	chr3	169650996	169650996	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggacactgtatggtagaAgacacaatgcctttctccca	9	10	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169650996	T	T	169650996	1	4	118	0	1	0	0	0	0	0	0	0	13935	87	3	5		5	SAMD7	3	169650996	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	810587	169650996	28371434	242	111444											
PRKCI	5584	broad.mit.edu	37	chr3	170020754	170020754	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcctaattacttgattttTaatcttattttaccatttaa	2	6	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170020754	C	C	170020754	1	2	118	0	1	0	0	0	0	0	0	0	12620	1769	61	5		5	PRKCI	3	170020754	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	369758	170020754	28001676	243	111445											
SLC7A14	57709	broad.mit.edu	37	chr3	170216488	170216488	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggggcaagaactggccctCcgcccagtatttcccattga	11	13	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170216488	A	A	170216488	4	1	118	1	0	0	0	0	0	1	0	0	14810	864	30	3	1608	3	SLC7A14	3	170216488	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	195734	170216488	27805942	244	111446											
MRPL47	57129	broad.mit.edu	37	chr3	179310384	179310384	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatgatatatgaccatatgTcatctggtataaagataata	7	4	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179310384	A	A	179310384	1	1	118	0	1	0	0	0	0	0	0	0	9905	1682	58	5		5	MRPL47	3	179310384	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	9093896	179310384	18712046	245	111447											
FXR1	8087	broad.mit.edu	37	chr3	180630644	180630644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccaggccaaagctcgagGccgctggattccttgcttct	11	14	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180630644	T	T	180630644	1	4	118	0	1	0	0	0	0	0	0	0	6175	1218	42	3		3	FXR1	3	180630644	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1320260	180630644	17391786	246	111448											
ABCC5	10057	broad.mit.edu	37	chr3	183667663	183667663	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agacgcttcagctcccgaatCaggaccctggagagagaatg	12	11	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183667663	A	A	183667663	2	1	118	1	0	0	0	0	0	0	0	1	56	813	29	3		3	ABCC5	3	183667663	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	3037019	183667663	14354767	247	111449											
SENP2	59343	broad.mit.edu	37	chr3	185341817	185341817	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatgaaagtaagaccaaaAgaaatagtgatctgaatctt	9	4	2	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185341817	T	T	185341817	4	4	118	1	0	0	0	0	0	1	0	0	14160	64	3	5	1616	5	SENP2	3	185341817	Nonsense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	1674154	185341817	12680613	248	111450											
AHSG	197	broad.mit.edu	37	chr3	186335058	186335058	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accagggtggtgcacgccgcGaaagctgccctggccgcctt	14	15	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186335058	C	C	186335058	2	2	118	1	0	0	0	0	0	0	0	1	420	1045	37	4		4	AHSG	3	186335058	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	993241	186335058	11687372	249	111451											
CCDC50	152137	broad.mit.edu	37	chr3	191075677	191075677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgagacaataaaatgaAgtgatggatgcaaagctgtt	11	3	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191075677	G	G	191075677	1	3	118	0	1	0	0	0	0	0	0	0	2848	87	3	5		5	CCDC50	3	191075677	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	4740619	191075677	6946753	250	111452											
GP5	2814	broad.mit.edu	37	chr3	194118069	194118069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccctaagtaccgcaggcGgctcaggttgcggaaggcgg	15	13	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194118069	A	A	194118069	3	1	118	1	0	0	0	0	1	0	0	0	6648	1116	39	4	743	4	GP5	3	194118069	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3042392	194118069	3904361	251	111453											
HGFAC	3083	broad.mit.edu	37	chr4	3444869	3444869	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagggcagtgcacacaggAagtggtgggtccgggcagcc	19	10	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3444869	G	G	3444869	3	3	118	1	0	0	0	0	1	0	0	0	7153	247	9	5	401	5	HGFAC	4	3444869	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08		3444869	187709407	252	111454											
ZBTB49	166793	broad.mit.edu	37	chr4	4314883	4314883	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgtgtggaagggagcatgtCtagtctcagtgtctttggta	14	7	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4314883	A	A	4314883	1	1	118	0	1	0	0	0	0	0	0	0	17676	928	32	3		3	ZBTB49	4	4314883	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	870014	4314883	186839393	253	111455											
STX18	53407	broad.mit.edu	37	chr4	4509121	4509121	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctatcacaatctttgttCccgttcctccactgaaatct	4	13	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4509121	A	A	4509121	1	1	118	0	1	0	0	0	0	0	0	0	15459	870	30	3		3	STX18	4	4509121	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	194238	4509121	186645155	254	111456											
EVC2	132884	broad.mit.edu	37	chr4	5682823	5682823	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaaccagtcagatagcctCagggcacacgggggacccga	14	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5682823	G	G	5682823	1	3	118	0	1	0	0	0	0	0	0	0	5328	841	29	4		4	EVC2	4	5682823	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1173702	5682823	185471453	255	111457											
GPR125	166647	broad.mit.edu	37	chr4	22390178	22390178	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaccacgaagaacgcaCtgaagcttaaacttgtggct	12	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22390178	A	A	22390178	3	1	118	1	0	0	0	0	1	0	0	0	6704	565	20	3	853	3	GPR125	4	22390178	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	16707355	22390178	168764098	256	111458											
DHX15	1665	broad.mit.edu	37	chr4	24541642	24541642	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatctataaaatccactatCatactaaaaattaaaaaaca	0	9	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24541642	A	A	24541642	1	1	118	0	1	0	0	0	0	0	0	0	4541	841	29	3		3	DHX15	4	24541642	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2151464	24541642	166612634	257	111459											
TBC1D19	55296	broad.mit.edu	37	chr4	26756481	26756481	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctattaataattctttttAttttttgtttcaggcagttc	5	5	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26756481	G	G	26756481	1	3	118	0	1	0	0	0	0	0	0	0	15726	464	16	5		5	TBC1D19	4	26756481	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	2214839	26756481	164397795	258	111460											
PDS5A	23244	broad.mit.edu	37	chr4	39904046	39904046	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttccaggttgtgggggaCaagatactgagcaaagattt	13	5	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39904046	T	T	39904046	3	4	118	1	0	0	0	0	1	0	0	0	11785	478	17	4	2710	4	PDS5A	4	39904046	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	13147565	39904046	151250230	259	111461											
GABRA2	2555	broad.mit.edu	37	chr4	46334749	46334749	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattatataataagagccacAggagagagaagggtttgagt	12	3	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46334749	T	T	46334749	1	4	118	0	1	0	0	0	0	0	0	0	6221	203	7	5		5	GABRA2	4	46334749	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	6430703	46334749	144819527	260	111462											
CORIN	10699	broad.mit.edu	37	chr4	47643838	47643838	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgaaggactctttgtttGagagcactaactctctgtgc	9	8	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47643838	C	C	47643838	1	2	118	0	1	0	0	0	0	0	0	0	3784	1305	45	4		4	CORIN	4	47643838	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1309089	47643838	143510438	261	111463											
CWH43	80157	broad.mit.edu	37	chr4	48997006	48997006	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctggagagaagggcactaGaagggtcttttcctctgtgc	13	9	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48997006	A	A	48997006	1	1	118	0	1	0	0	0	0	0	0	0	4106	957	33	4		4	CWH43	4	48997006	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1353168	48997006	142157270	262	111464											
PDGFRA	5156	broad.mit.edu	37	chr4	55131116	55131116	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctggatctagaaatggaagCtcttaaaaccgtgtataagt	10	6	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55131116	G	G	55131116	3	3	118	1	0	0	0	0	1	0	0	0	11755	797	28	4	673	4	PDGFRA	4	55131116	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	6134110	55131116	136023160	263	111465											
KDR	3791	broad.mit.edu	37	chr4	55961743	55961743	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggattaggagatgacataCcttgtaggggacaaattcat	11	6	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55961743	A	A	55961743	5	1	118	1	0	0	0	0	0	0	1	0	8209	521	18	3	1296	3	KDR	4	55961743	Splice_Site	SNP	C	TCGA-44-4112-01A-01D-1458-08	830627	55961743	135192533	264	111466											
TECRL	253017	broad.mit.edu	37	chr4	65171048	65171049	+	Intron	INS	-	T	T													atattacatgcatgtcacaaINStttgaaaccaccacatacat							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65171049	T	T	65171048	6	5	118	0	1	1	1	0	0	0	0	0	15868	116	4	0		0	TECRL	4	65171048	Intron	INS	-	TCGA-44-4112-01A-01D-1458-08	9209305	65171048	125983228	265	111467											
UBA6	55236	broad.mit.edu	37	chr4	68534382	68534382	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaggcaagtaacaatgCcaggatttgcctaaaaataa	7	7	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68534382	T	T	68534382	3	4	118	1	0	0	0	0	1	0	0	0	16958	739	26	4	2578	4	UBA6	4	68534382	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3363334	68534382	122619894	266	111468											
UGT2B15	7366	broad.mit.edu	37	chr4	69535962	69535962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcatctttacagagcttGttactgtagtcataatattc	6	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69535962	T	T	69535962	3	4	118	1	0	0	0	0	1	0	0	0	17084	1368	48	3	2858	3	UGT2B15	4	69535962	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1001580	69535962	121618314	267	111469											
UGT2B10	7365	broad.mit.edu	37	chr4	69879862	69879862	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagagctctgtacaaacTcctccatttgctgtggaaaa	7	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69879862	A	A	69879862	3	1	118	1	0	0	0	0	1	0	0	0	17082	1551	54	5	2335	5	UGT2B10	4	69879862	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	343900	69879862	121274414	268	111470											
SULT1B1	27284	broad.mit.edu	37	chr4	70592733	70592733	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcatttgattgcccaaatCaattcataactgccctcgtt	4	11	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70592733	A	A	70592733	1	1	118	0	1	0	0	0	0	0	0	0	15494	841	29	3		3	SULT1B1	4	70592733	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	712871	70592733	120561543	269	111471											
ODAM	54959	broad.mit.edu	37	chr4	71062455	71062455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaatagcaatgaggttaGtttaaataattaaaacaatc	6	5	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71062455	T	T	71062455	1	4	118	0	1	0	0	0	0	0	0	0	10919	1044	36	3		3	ODAM	4	71062455	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	469722	71062455	120091821	270	111472											
GRSF1	2926	broad.mit.edu	37	chr4	71691024	71691024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacttacgaacgtgggacCgatccttgagcatcgctgca	12	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71691024	A	A	71691024	3	1	118	1	0	0	0	0	1	0	0	0	6875	652	23	1	68	1	GRSF1	4	71691024	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	628569	71691024	119463252	271	111473											
GC	2638	broad.mit.edu	37	chr4	72618103	72618103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttcattgcaaagacagCcaagttacaataacaccagg	6	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72618103	A	A	72618103	1	1	118	0	1	0	0	0	0	0	0	0	6344	754	26	3		3	GC	4	72618103	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	927079	72618103	118536173	272	111474											
NPFFR2	10886	broad.mit.edu	37	chr4	72897911	72897911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgccgacagggctcgccGggagaggtaacagcatgggc	17	12	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72897911	T	T	72897911	3	4	118	1	0	0	0	0	1	0	0	0	10673	1116	39	1	295	1	NPFFR2	4	72897911	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	279808	72897911	118256365	273	111475											
CCDC158	339965	broad.mit.edu	37	chr4	77265972	77265972	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtcctcgagagaagatgcaGaaaccgggagagggtgaagg	18	6	0	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77265972	C	C	77265972	1	2	118	0	1	0	0	0	0	0	0	0	2817	957	33	4		4	CCDC158	4	77265972	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4368061	77265972	113888304	274	111476											
FRAS1	80144	broad.mit.edu	37	chr4	79402985	79402985	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagattccagttatccgccAtggtactgacctctctactt	6	12	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79402985	G	G	79402985	3	3	118	1	0	0	0	0	1	0	0	0	6102	217	8	5	8772	5	FRAS1	4	79402985	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	2137013	79402985	111751291	275	111477											
AGPAT9	84803	broad.mit.edu	37	chr4	84516068	84516068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcttgtcctcatgtctGgtttgaacgctcagaaatga	10	9	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84516068	T	T	84516068	3	4	118	1	0	0	0	0	1	0	0	0	392	1357	47	2	835	2	AGPAT9	4	84516068	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	5113083	84516068	106638208	276	111478											
GRID2	2895	broad.mit.edu	37	chr4	94343884	94343884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcttttagggagcactAtagattgacatcagaaattt	8	6	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94343884	G	G	94343884	1	3	118	0	1	0	0	0	0	0	0	0	6838	464	16	5		5	GRID2	4	94343884	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	9827816	94343884	96810392	277	111479											
UNC5C	8633	broad.mit.edu	37	chr4	96256818	96256818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtggaagatggttaacaCattgtaacaacttgccttct	8	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96256818	A	A	96256818	1	1	118	0	1	0	0	0	0	0	0	0	17119	493	17	3		3	UNC5C	4	96256818	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1912934	96256818	94897458	278	111480											
ALPK1	80216	broad.mit.edu	37	chr4	113350384	113350384	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgccttcagtgcctataCgccgctcttcgtgctcacag	9	15	3	0	rs34120296		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113350384	T	T	113350384	3	4	118	1	0	0	0	0	1	0	0	0	544	536	19	4	905	4	ALPK1	4	113350384	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	17093566	113350384	77803892	279	111481											
ANK2	287	broad.mit.edu	37	chr4	113803112	113803112	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgccatctacctcctccAcagtggcatacgtgacaaac	8	15	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113803112	T	T	113803112	1	4	118	0	1	0	0	0	0	0	0	0	621	174	6	5		5	ANK2	4	113803112	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	452728	113803112	77351164	280	111482											
ANK2	287	broad.mit.edu	37	chr4	114153332	114153332	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagaatggctttactcctTtatacatggctgcccaagag	8	11	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114153332	A	A	114153332	3	1	118	1	0	0	0	0	1	0	0	0	621	1838	64	5	443	5	ANK2	4	114153332	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	350220	114153332	77000944	281	111483											
ANK2	287	broad.mit.edu	37	chr4	114158799	114158799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacagtattgtggttatacCaaaatttaccttgtctttat	6	6	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114158799	A	A	114158799	1	1	118	0	1	0	0	0	0	0	0	0	621	609	21	2		2	ANK2	4	114158799	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	5467	114158799	76995477	282	111484											
ANK2	287	broad.mit.edu	37	chr4	114274319	114274319	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagatgaaacaagatttgatCaaaatgaccgccatcttgac	8	8	2	6			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114274319	G	G	114274319	3	3	118	1	0	0	0	0	1	0	0	0	621	816	29	4	4760	4	ANK2	4	114274319	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	115520	114274319	76879957	283	111485											
ADAD1	132612	broad.mit.edu	37	chr4	123336740	123336740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgtttctttggagattGtggatggcctgagtgggaag	17	3	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123336740	T	T	123336740	3	4	118	1	0	0	0	0	1	0	0	0	231	1377	48	3	1490	3	ADAD1	4	123336740	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	9062421	123336740	67817536	284	111486											
FAT4	79633	broad.mit.edu	37	chr4	126337745	126337745	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatcgggaaacaaaagagcGctttgtcttaatgattacag	11	6	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126337745	C	C	126337745	3	2	118	1	0	0	0	0	1	0	0	0	5749	1087	38	4	7008	4	FAT4	4	126337745	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3001005	126337745	64816531	285	111487											
PLK4	10733	broad.mit.edu	37	chr4	128804445	128804445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagccatgtacaaagcagGaatggtacagagagtccaaa	11	7	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128804445	T	T	128804445	3	4	118	1	0	0	0	0	1	0	0	0	12193	1174	41	3	165	3	PLK4	4	128804445	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2466700	128804445	62349831	286	111488											
GUCY1A3	2982	broad.mit.edu	37	chr4	156629414	156629414	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggaaagagaagactttgAaaaaacaattgcagagcaag	10	4	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156629414	G	G	156629414	3	3	118	1	0	0	0	0	1	0	0	0	6959	246	9	5	354	5	GUCY1A3	4	156629414	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	27824969	156629414	34524862	287	111489											
FAM198B	51313	broad.mit.edu	37	chr4	159052134	159052134	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccttgcgaggtctgaatcCacagcaatttgtatctaagc	8	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159052134	G	G	159052134	3	3	118	1	0	0	0	0	1	0	0	0	5576	603	21	4	411	4	FAM198B	4	159052134	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	2422720	159052134	32102142	288	111490											
NAF1	92345	broad.mit.edu	37	chr4	164049999	164049999	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttgaaaaaaaaaaatcCttaccacataatatgaaaag	3	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164049999	A	A	164049999	1	1	118	0	1	0	0	0	0	0	0	0	10234	696	24	2		2	NAF1	4	164049999	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	4997865	164049999	27104277	289	111491											
TKTL2	84076	broad.mit.edu	37	chr4	164394019	164394019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttccacaggcgattttgGtatgagattctcattggtct	10	8	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164394019	T	T	164394019	3	4	118	1	0	0	0	0	1	0	0	0	16059	1261	44	3	1016	3	TKTL2	4	164394019	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	344020	164394019	26760257	290	111492											
SC4MOL	6307	broad.mit.edu	37	chr4	166258949	166258949	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttcgtaggataagccAgagacatgggaaaaccaatg	10	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166258949	T	T	166258949	2	4	118	1	0	0	0	0	0	0	0	1	13977	175	7	5		5	SC4MOL	4	166258949	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	1864930	166258949	24895327	291	111493											
CPE	1363	broad.mit.edu	37	chr4	166325757	166325757	+	Intron	DEL	G	-	-													acttcatccaccagtgtggcGgcacccacaggaaggccaag					rs2241814	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	166325757	-	-	166325757	6	5	118	0	1	1	0	1	0	0	0	0	3831	1131	39	0		0	CPE	4	166325757	Intron	DEL	G	TCGA-44-4112-01A-01D-1458-08	66808	166325757	24828519	292	111494											
GPM6A	2823	broad.mit.edu	37	chr4	176573023	176573023	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagagatttgctccctccActaatgtggtgttccggcag	11	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176573023	T	T	176573023	3	4	118	1	0	0	0	0	1	0	0	0	6680	159	6	5	349	5	GPM6A	4	176573023	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	10247266	176573023	14581253	293	111495											
ODZ3	55714	broad.mit.edu	37	chr4	183600672	183600672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtaaatgctatgcatgGgagacttctaccatttggac	9	9	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183600672	T	T	183600672	1	4	118	0	1	0	0	0	0	0	0	0	10931	1247	43	2		2	ODZ3	4	183600672	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	7027649	183600672	7553604	294	111496											
ODZ3	55714	broad.mit.edu	37	chr4	183651436	183651436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctcgtttttccattaccCagaatatggatatactatta	5	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183651436	A	A	183651436	3	1	118	1	0	0	0	0	1	0	0	0	10931	594	21	2	2723	2	ODZ3	4	183651436	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	50764	183651436	7502840	295	111497											
ODZ3	55714	broad.mit.edu	37	chr4	183664485	183664485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtggcgctagcttgtgGgatcgatggcagtctgtacg	15	10	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183664485	T	T	183664485	3	4	118	1	0	0	0	0	1	0	0	0	10931	1232	43	2	3612	2	ODZ3	4	183664485	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	13049	183664485	7489791	296	111498											
FAT1	2195	broad.mit.edu	37	chr4	187538952	187538952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccccaccttgggggtcatCctcactcacagtccctttat	6	17	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187538952	A	A	187538952	3	1	118	1	0	0	0	0	1	0	0	0	5746	855	30	3	5050	3	FAT1	4	187538952	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3874467	187538952	3615324	297	111499											
AHRR	57491	broad.mit.edu	37	chr5	434430	434430	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgggggacctgtgtggtccGacgctgctgctagatgtgtc	16	11	0	1	rs111334085		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	434430	A	A	434430	2	1	118	1	0	0	0	0	0	0	0	1	417	1045	37	4		4	AHRR	5	434430	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08		434430	180480830	298	111500											
SLC9A3	6550	broad.mit.edu	37	chr5	482774	482774	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcaaaggccacggccccGcgcaggcccccgtaggacag	15	16	0	0	rs143761751		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	482774	A	A	482774	2	1	118	1	0	0	0	0	0	0	0	1	14827	1074	38	4		4	SLC9A3	5	482774	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	48344	482774	180432486	299	111501											
SLC12A7	10723	broad.mit.edu	37	chr5	1074609	1074609	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcccctgagactcaaaggtCcccactcaaaggccgacctc	9	17	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1074609	A	A	1074609	1	1	118	0	1	0	0	0	0	0	0	0	14501	870	30	3		3	SLC12A7	5	1074609	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	591835	1074609	179840651	300	111502											
LPCAT1	79888	broad.mit.edu	37	chr5	1477512	1477512	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgatgggggaaggagctgctCacttactcggccatgactcg	14	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1477512	G	G	1477512	1	3	118	0	1	0	0	0	0	0	0	0	8997	841	29	4		4	LPCAT1	5	1477512	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	402903	1477512	179437748	301	111503											
KIAA0947	23379	broad.mit.edu	37	chr5	5461293	5461293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagaagatgatgactcaGgtgatggaatggatgtagca	13	4	2	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5461293	T	T	5461293	3	4	118	1	0	0	0	0	1	0	0	0	8272	1000	35	2	1896	2	KIAA0947	5	5461293	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3983781	5461293	175453967	302	111504											
MTRR	4552	broad.mit.edu	37	chr5	7900289	7900289	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctttcaacatttcttgaaGgacatggagtggagattgga	11	5	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7900289	A	A	7900289	1	1	118	0	1	0	0	0	0	0	0	0	10055	1015	35	4		4	MTRR	5	7900289	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	2438996	7900289	173014971	303	111505											
CTNND2	1501	broad.mit.edu	37	chr5	11565244	11565244	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccaaaataataggacgGctgagggagaaaaatatgat	11	5	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11565244	T	T	11565244	1	4	118	0	1	0	0	0	0	0	0	0	4054	1218	42	3		3	CTNND2	5	11565244	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3664955	11565244	169350016	304	111506											
DNAH5	1767	broad.mit.edu	37	chr5	13820609	13820609	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaaccagcttcttcaacCtgaaaacataagagaatccc	4	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13820609	A	A	13820609	5	1	118	1	0	0	0	0	0	0	1	0	4644	695	24	2	7343	2	DNAH5	5	13820609	Splice_Site	SNP	C	TCGA-44-4112-01A-01D-1458-08	2255365	13820609	167094651	305	111507											
TRIO	7204	broad.mit.edu	37	chr5	14461326	14461326	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagctggcgcacaagcacaAgaagagccgcgaggtccgca	14	12	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14461326	G	G	14461326	3	3	118	1	0	0	0	0	1	0	0	0	16677	72	3	5	5540	5	TRIO	5	14461326	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	640717	14461326	166453934	306	111508											
CDH10	1008	broad.mit.edu	37	chr5	24487744	24487744	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgggtagagttactttctCttgtttgaacagaacatata	8	6	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24487744	G	G	24487744	1	3	118	0	1	0	0	0	0	0	0	0	3126	928	32	4		4	CDH10	5	24487744	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	10026418	24487744	156427516	307	111509											
CDH6	1004	broad.mit.edu	37	chr5	31323317	31323317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgctggagtcagtgaccacgGatgcagatcaagactatgat	12	9	2	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323317	T	T	31323317	3	4	118	1	0	0	0	0	1	0	0	0	3144	1174	41	3	2317	3	CDH6	5	31323317	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	6835573	31323317	149591943	308	111510											
RXFP3	51289	broad.mit.edu	37	chr5	33937086	33937086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggacacagaggcccgggtgCggattctcatcagcgtggtg	16	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33937086	A	A	33937086	2	1	118	1	0	0	0	0	0	0	0	1	13872	759	27	3		3	RXFP3	5	33937086	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	2613769	33937086	146978174	309	111511											
AMACR	23600	broad.mit.edu	37	chr5	33989433	33989433	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccttgttgtgatcatgaTgaacaacctcctcaaaagtc	7	10	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33989433	A	A	33989433	3	1	118	1	0	0	0	0	1	0	0	0	562	1464	51	5	296	5	AMACR	5	33989433	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	52347	33989433	146925827	310	111512											
PRLR	5618	broad.mit.edu	37	chr5	35084585	35084585	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccttacctatgtaagtcacGtccacataaagttcatccga	5	13	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35084585	C	C	35084585	3	2	118	1	0	0	0	0	1	0	0	0	12637	1136	40	4	1532	4	PRLR	5	35084585	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1095152	35084585	145830675	311	111513											
UGT3A1	133688	broad.mit.edu	37	chr5	35988559	35988560	+	Frame_Shift_Ins	INS	-	A	A													taaaaaagatacctgggatcINSaaaaactttccactctgatg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35988560	A	A	35988559	7	5	118	1	0	1	1	0	0	0	0	0	17089	825	29	0	1488	0	UGT3A1	5	35988559	Frame_Shift_Ins	INS	-	TCGA-44-4112-01A-01D-1458-08	903974	35988559	144926701	312	111514											
SLC1A3	6507	broad.mit.edu	37	chr5	36677103	36677103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccatggagactcttacccGaatcacagaggagctggtcc	12	12	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36677103	T	T	36677103	3	4	118	1	0	0	0	0	1	0	0	0	14546	1058	37	3	712	3	SLC1A3	5	36677103	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	688544	36677103	144238157	313	111515											
NUP155	9631	broad.mit.edu	37	chr5	37341209	37341209	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacctttactataaagagctCtatgtacttttgaaggcttt	6	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37341209	A	A	37341209	3	1	118	1	0	0	0	0	1	0	0	0	10851	913	32	3	3046	3	NUP155	5	37341209	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	664106	37341209	143574051	314	111516											
WDR70	55100	broad.mit.edu	37	chr5	37379352	37379352	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccgctcttggcttcggCggcgccgctgtagcttgaag	16	13	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37379352	T	T	37379352	1	4	118	0	1	0	0	0	0	0	0	0	17448	783	27	4		4	WDR70	5	37379352	5'Flank	SNP	C	TCGA-44-4112-01A-01D-1458-08	38143	37379352	143535908	315	111517											
C7	730	broad.mit.edu	37	chr5	40948089	40948089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatctaaaattgcaagaatGtattattgtctacttaaaat	5	4	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40948089	T	T	40948089	1	4	118	0	1	0	0	0	0	0	0	0	2400	1392	48	3		3	C7	5	40948089	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3568737	40948089	139967171	316	111518											
ITGA1	3672	broad.mit.edu	37	chr5	52211398	52211398	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacagatgtgactattggGggccttggtggtgctgccct	15	9	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52211398	T	T	52211398	2	4	118	1	0	0	0	0	0	0	0	1	7942	1219	43	2		2	ITGA1	5	52211398	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	11263309	52211398	128703862	317	111519											
ADAMTS6	11174	broad.mit.edu	37	chr5	64569202	64569202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtttgacacagtgtccCctcagctgctggaatactgt	9	13	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64569202	A	A	64569202	3	1	118	1	0	0	0	0	1	0	0	0	270	623	22	2	1824	2	ADAMTS6	5	64569202	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	12357804	64569202	116346058	318	111520											
BDP1	55814	broad.mit.edu	37	chr5	70818542	70818542	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaaattaacatagagattGtttctgtagtaatactagct	6	6	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70818542	C	C	70818542	1	2	118	0	1	0	0	0	0	0	0	0	1400	1392	48	4		4	BDP1	5	70818542	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	6249340	70818542	110096718	319	111521											
FCHO2	115548	broad.mit.edu	37	chr5	72383455	72383455	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaatttgatctttcagaagGacctagtaaacccacgacac	6	10	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72383455	A	A	72383455	3	1	118	1	0	0	0	0	1	0	0	0	5845	1174	41	4	2383	4	FCHO2	5	72383455	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1564913	72383455	108531805	320	111522											
F2R	2149	broad.mit.edu	37	chr5	76029424	76029424	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaactttattgattcacctCctaaaacaacagatgtacga	4	10	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76029424	A	A	76029424	1	1	118	0	1	0	0	0	0	0	0	0	5386	870	30	3		3	F2R	5	76029424	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	3645969	76029424	104885836	321	111523											
CRHBP	1393	broad.mit.edu	37	chr5	76254477	76254477	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggccctagatcatgaacaGgagccctagaataagataca	9	9	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76254477	A	A	76254477	1	1	118	0	1	0	0	0	0	0	0	0	3902	1015	35	4		4	CRHBP	5	76254477	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	225053	76254477	104660783	322	111524											
AGGF1	55109	broad.mit.edu	37	chr5	76358802	76358802	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaatcaaaaaattgtagaGtcctaagttggacacagcag	8	6	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76358802	A	A	76358802	1	1	118	0	1	0	0	0	0	0	0	0	382	1044	36	4		4	AGGF1	5	76358802	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	104325	76358802	104556458	323	111525											
THBS4	7060	broad.mit.edu	37	chr5	79373964	79373964	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagaacgcagaggtcaccCtgaccgacttcagggcttac	11	13	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79373964	G	G	79373964	3	3	118	1	0	0	0	0	1	0	0	0	15979	680	24	4	2245	4	THBS4	5	79373964	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3015162	79373964	101541296	324	111526											
EDIL3	10085	broad.mit.edu	37	chr5	83525562	83525563	+	Intron	DNP	TG	CT	CT													agtaaataaataaacaaaccTgtgccaattttctggttgaa							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	83525563	CT	CT	83525562	1	2	118	0	1	0	0	0	0	0	0	0	4955	1595	55	5		5	EDIL3	5	83525562	Intron	DNP	TG	TCGA-44-4112-01A-01D-1458-08	4151598	83525562	97389698	325	111527											
MCTP1	79772	broad.mit.edu	37	chr5	94245197	94245197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatctagaaaagcacgctgTgtgctatttgaaaaaaagat	9	5	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94245197	C	C	94245197	1	2	118	0	1	0	0	0	0	0	0	0	9493	1711	59	5		5	MCTP1	5	94245197	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	10719635	94245197	86670063	326	111528											
LIX1	167410	broad.mit.edu	37	chr5	96443237	96443237	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggagaaaaggagtcatttgAgaatttagcatttcaccatt	10	5	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96443237	T	T	96443237	1	4	118	0	1	0	0	0	0	0	0	0	8905	319	11	5		5	LIX1	5	96443237	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	2198040	96443237	84472023	327	111529											
FER	2241	broad.mit.edu	37	chr5	108281839	108281839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatccctccaggaaagaaaGgagaggctatccaaatttga	9	8	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108281839	T	T	108281839	3	4	118	1	0	0	0	0	1	0	0	0	5870	991	35	2	1279	2	FER	5	108281839	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	11838602	108281839	72633421	328	111530											
AQPEP	206338	broad.mit.edu	37	chr5	115339077	115339077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttgaaaaggatcctaaGgtaaggttacttttgatact	8	6	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115339077	T	T	115339077	3	4	118	1	0	0	0	0	1	0	0	0	836	1014	35	2	2083	2	AQPEP	5	115339077	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	7057238	115339077	65576183	329	111531											
PRRC1	133619	broad.mit.edu	37	chr5	126859188	126859188	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaaatgatggaagagagtgGaatagagacaacaccacctg	11	6	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126859188	C	C	126859188	3	2	118	1	0	0	0	0	1	0	0	0	12710	1174	41	4	19	4	PRRC1	5	126859188	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	11520111	126859188	54056072	330	111532											
SLC12A2	6558	broad.mit.edu	37	chr5	127483407	127483407	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagcatccctagtgagtgctCccaaaatatttcaggtaagt	8	9	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127483407	T	T	127483407	3	4	118	1	0	0	0	0	1	0	0	0	14496	855	30	4	1909	4	SLC12A2	5	127483407	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	624219	127483407	53431853	331	111533											
FBN2	2201	broad.mit.edu	37	chr5	127710389	127710389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcggaaggacccttcaCtgttgatgcagtgcccattc	10	13	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127710389	A	A	127710389	3	1	118	1	0	0	0	0	1	0	0	0	5760	565	20	3	6915	3	FBN2	5	127710389	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	226982	127710389	53204871	332	111534											
PHF15	23338	broad.mit.edu	37	chr5	133909338	133909338	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcttgttttctcaggttAgaaatctgtgctacatggtg	9	8	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133909338	G	G	133909338	3	3	118	1	0	0	0	0	1	0	0	0	11921	412	15	5	1472	5	PHF15	5	133909338	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	6198949	133909338	47005922	333	111535											
BRD8	10902	broad.mit.edu	37	chr5	137486821	137486821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggacaaaatggtttaatTaatacaatcatctaaaatct	5	5	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137486821	A	A	137486821	1	1	118	0	1	0	0	0	0	0	0	0	1515	1769	61	5		5	BRD8	5	137486821	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	3577483	137486821	43428439	334	111536											
MATR3	9782	broad.mit.edu	37	chr5	138650238	138650238	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattaaatcaatgtgatttaGtgaatgggcaggtgtttgta	11	2	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138650238	C	C	138650238	1	2	118	0	1	0	0	0	0	0	0	0	9429	1044	36	4		4	MATR3	5	138650238	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1163417	138650238	42265022	335	111537											
PSD2	84249	broad.mit.edu	37	chr5	139193210	139193210	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctccatctccagcagcCgctctgagaatgtcctgagc	11	15	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139193210	T	T	139193210	3	4	118	1	0	0	0	0	1	0	0	0	12753	652	23	4	694	4	PSD2	5	139193210	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	542972	139193210	41722050	336	111538											
PCDHA3	56145	broad.mit.edu	37	chr5	140181953	140181953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcacctgctcgctgacgCcccacgtccccttcaagctg	9	18	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140181953	A	A	140181953	3	1	118	1	0	0	0	0	1	0	0	0	11619	739	26	3	1173	3	PCDHA3	5	140181953	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	988743	140181953	40733307	337	111539											
PCDHB8	56128	broad.mit.edu	37	chr5	140558219	140558219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtgctggacaaagcgctgGaccgagaggaagaagctgag	17	7	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140558219	T	T	140558219	3	4	118	1	0	0	0	0	1	0	0	0	11642	1174	41	3	606	3	PCDHB8	5	140558219	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	376266	140558219	40357041	338	111540											
PCDHB14	56122	broad.mit.edu	37	chr5	140603156	140603156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggattgtctcgggcaGgtactgaatctgcacactat	12	9	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140603156	T	T	140603156	3	4	118	1	0	0	0	0	1	0	0	0	11633	1000	35	2	81	2	PCDHB14	5	140603156	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	44937	140603156	40312104	339	111541											
PCDHGB1	56104	broad.mit.edu	37	chr5	140731096	140731096	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaatcatagccaccgacaaGggcaaaccagccctttcctc	6	16	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140731096	A	A	140731096	2	1	118	1	0	0	0	0	0	0	0	1	11656	991	35	4		4	PCDHGB1	5	140731096	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	127940	140731096	40184164	340	111542											
PCDHGB7	56099	broad.mit.edu	37	chr5	140799011	140799011	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgagcagctgcgcaccttcGagctcacgctgcaggcccgc	12	17	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140799011	T	T	140799011	4	4	118	1	0	0	0	0	0	1	0	0	11662	1059	37	3	1587	3	PCDHGB7	5	140799011	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	67915	140799011	40116249	341	111543											
PCDHGA12	26025	broad.mit.edu	37	chr5	140810274	140810274	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgggcgaaggaactgctcCtgacttcagtggttaagggc	14	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140810274	T	T	140810274	1	4	118	0	1	0	0	0	0	0	0	0	11647	696	24	4		4	PCDHGA12	5	140810274	5'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	11263	140810274	40104986	342	111544											
PCDHGA12	26025	broad.mit.edu	37	chr5	140812210	140812210	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgggcgaggtgcgcacGgcgcgagccctgctggacag	17	14	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140812210	T	T	140812210	2	4	118	1	0	0	0	0	0	0	0	1	11647	1103	39	1		1	PCDHGA12	5	140812210	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	1936	140812210	40103050	343	111545											
RBM27	54439	broad.mit.edu	37	chr5	145603198	145603198	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtgtattgattcaagttTccggattttaggcatggtac	10	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145603198	A	A	145603198	1	1	118	0	1	0	0	0	0	0	0	0	13235	1798	62	5		5	RBM27	5	145603198	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4790988	145603198	35312062	344	111546											
SPINK5	11005	broad.mit.edu	37	chr5	147443647	147443647	+	Frame_Shift_Del	DEL	C	-	-													cagtgcttctgcccttggctCtttgcctcatacaaggtgag							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147443647	-	-	147443647	7	5	118	1	0	1	0	1	0	0	0	0	15180	913	32	0	42	0	SPINK5	5	147443647	Frame_Shift_Del	DEL	C	TCGA-44-4112-01A-01D-1458-08	1840449	147443647	33471613	345	111547											
ADAM19	8728	broad.mit.edu	37	chr5	156991474	156991474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcaacaacaaaacaatGtcagttcctaaaagccggca	6	10	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156991474	T	T	156991474	1	4	118	0	1	0	0	0	0	0	0	0	240	1392	48	3		3	ADAM19	5	156991474	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	9547827	156991474	23923786	346	111548											
EBF1	1879	broad.mit.edu	37	chr5	158135059	158135059	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtctgacgactggtgcgaAagcactcttctgtttcacgg	13	10	4	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158135059	G	G	158135059	3	3	118	1	0	0	0	0	1	0	0	0	4920	14	1	5	111	5	EBF1	5	158135059	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	1143585	158135059	22780201	347	111549											
GABRG2	2566	broad.mit.edu	37	chr5	161569396	161569396	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatttttatgtccatttctAtgttgatctgctttaaattt	4	5	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161569396	T	T	161569396	1	4	118	0	1	0	0	0	0	0	0	0	6232	464	16	5		5	GABRG2	5	161569396	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	3434337	161569396	19345864	348	111550											
HMMR	3161	broad.mit.edu	37	chr5	162909666	162909666	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctataaagcgttaacagcCagtgagatagaagatcttaa	9	6	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162909666	T	T	162909666	2	4	118	1	0	0	0	0	0	0	0	1	7309	581	21	4		4	HMMR	5	162909666	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1340270	162909666	18005594	349	111551											
SLIT3	6586	broad.mit.edu	37	chr5	168093656	168093656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcataacctttctggcggcGgatcacctctcggactactt	9	13	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168093656	T	T	168093656	3	4	118	1	0	0	0	0	1	0	0	0	14855	1116	39	1	200	1	SLIT3	5	168093656	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	5183990	168093656	12821604	350	111552											
DOCK2	1794	broad.mit.edu	37	chr5	169230287	169230287	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgtgaaatattgatactGatggatagcagctggagtct	11	5	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169230287	T	T	169230287	1	4	118	0	1	0	0	0	0	0	0	0	4727	1305	45	3		3	DOCK2	5	169230287	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1136631	169230287	11684973	351	111553											
DOCK2	1794	broad.mit.edu	37	chr5	169267705	169267705	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgtctgtgtcctttgtacAattgttcagatgcagtgtcc	10	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169267705	T	T	169267705	1	4	118	0	1	0	0	0	0	0	0	0	4727	145	5	5		5	DOCK2	5	169267705	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	37418	169267705	11647555	352	111554											
DOCK2	1794	broad.mit.edu	37	chr5	169494661	169494661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggattgtggaccctgctGtcatgggaggcttcgccaag	15	10	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169494661	T	T	169494661	3	4	118	1	0	0	0	0	1	0	0	0	4727	1377	48	3	4793	3	DOCK2	5	169494661	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	226956	169494661	11420599	353	111555											
FOXI1	2299	broad.mit.edu	37	chr5	169533120	169533120	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctccttcgaggggggcggCgagtatggggccacccccaa	15	15	0	0	rs146116253		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169533120	G	G	169533120	2	3	118	1	0	0	0	0	0	0	0	1	6069	755	27	4		4	FOXI1	5	169533120	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	38459	169533120	11382140	354	111556											
RANBP17	64901	broad.mit.edu	37	chr5	170725662	170725662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagagccgtcctccaggaGggggctccccaaagtcctga	12	14	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170725662	T	T	170725662	1	4	118	0	1	0	0	0	0	0	0	0	13135	1015	35	2		2	RANBP17	5	170725662	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1192542	170725662	10189598	355	111557											
TLX3	30012	broad.mit.edu	37	chr5	170736451	170736451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagatccttaacagcccgGaccaggacagcgcacccgcc	9	18	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170736451	T	T	170736451	3	4	118	1	0	0	0	0	1	0	0	0	16085	1174	41	3	84	3	TLX3	5	170736451	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	10789	170736451	10178809	356	111558											
HMP19	51617	broad.mit.edu	37	chr5	173491286	173491286	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggaacagaagaacaaagggAagttccgggtgccgaaaatc	13	8	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173491286	T	T	173491286	4	4	118	1	0	0	0	0	0	1	0	0	7312	247	9	5	187	5	HMP19	5	173491286	Nonsense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	2754835	173491286	7423974	357	111559											
HMP19	51617	broad.mit.edu	37	chr5	173534364	173534364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcttactactcctcccaGgaccccaattccagaagccg	7	16	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173534364	T	T	173534364	3	4	118	1	0	0	0	0	1	0	0	0	7312	991	35	2	386	2	HMP19	5	173534364	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	43078	173534364	7380896	358	111560											
CDHR2	54825	broad.mit.edu	37	chr5	176011426	176011426	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaggagtgctagtgggcgTggtgaaggcctgggacgcgg	20	8	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176011426	A	A	176011426	3	1	118	1	0	0	0	0	1	0	0	0	3149	1696	59	5	2214	5	CDHR2	5	176011426	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	2477062	176011426	4903834	359	111561											
GPRIN1	114787	broad.mit.edu	37	chr5	176026665	176026665	+	Frame_Shift_Del	DEL	G	-	-													ctttggtcaggggtgtgcctGgggggtgcagggcttgcctt					rs139277418	byFrequency	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176026665	-	-	176026665	7	5	118	1	0	1	0	1	0	0	0	0	6795	1335	47	0	2859	0	GPRIN1	5	176026665	Frame_Shift_Del	DEL	G	TCGA-44-4112-01A-01D-1458-08	15239	176026665	4888595	360	111562											
UNC5A	90249	broad.mit.edu	37	chr5	176306803	176306803	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcggcacttccccaacggCaacctcagccagctggctgc	11	18	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176306803	T	T	176306803	2	4	118	1	0	0	0	0	0	0	0	1	17117	697	25	4		4	UNC5A	5	176306803	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	280138	176306803	4608457	361	111563											
ADAMTS2	9509	broad.mit.edu	37	chr5	178585744	178585744	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcatgccggaaggcccaAagtcctgccgtgtgaggaag	14	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178585744	C	C	178585744	3	2	118	1	0	0	0	0	1	0	0	0	265	14	1	5	2666	5	ADAMTS2	5	178585744	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	2278941	178585744	2329516	362	111564											
DSP	1832	broad.mit.edu	37	chr6	7563932	7563932	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttctatacaatccacaaGgggatttatatctacctgct	5	10	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7563932	A	A	7563932	1	1	118	0	1	0	0	0	0	0	0	0	4821	1015	35	4		4	DSP	6	7563932	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08		7563932	163551135	363	111565											
DSP	1832	broad.mit.edu	37	chr6	7585490	7585490	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcatccacccaaccacGggccagaagctgtcacttca	8	16	3	1	rs35379048	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7585490	T	T	7585490	2	4	118	1	0	0	0	0	0	0	0	1	4821	1103	39	1		1	DSP	6	7585490	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	21558	7585490	163529577	364	111566											
NRSN1	140767	broad.mit.edu	37	chr6	24134757	24134757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaaggtaaggaaggagCatgtgtttaacttagggaat	14	3	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24134757	A	A	24134757	1	1	118	0	1	0	0	0	0	0	0	0	10757	725	25	3		3	NRSN1	6	24134757	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	16549267	24134757	146980310	365	111567											
NRSN1	140767	broad.mit.edu	37	chr6	24146308	24146308	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgggcaatataatgggtgGactcacacttgctcagttca	11	8	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24146308	T	T	24146308	1	4	118	0	1	0	0	0	0	0	0	0	10757	1189	41	3		3	NRSN1	6	24146308	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	11551	24146308	146968759	366	111568											
SLC17A2	10246	broad.mit.edu	37	chr6	25918584	25918584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattaaaaatgataccaaccGttgacattttttatcatctt	4	7	2	2	rs115821474	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25918584	T	T	25918584	1	4	118	0	1	0	0	0	0	0	0	0	14530	1160	40	3		3	SLC17A2	6	25918584	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1772276	25918584	145196483	367	111569											
OR2W1	26692	broad.mit.edu	37	chr6	29012092	29012092	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttaaggtgtaaatgagCgggttgagacttggagtgat	14	3	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29012092	A	A	29012092	2	1	118	1	0	0	0	0	0	0	0	1	11126	755	27	3		3	OR2W1	6	29012092	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	3093508	29012092	142102975	368	111570											
GABBR1	2550	broad.mit.edu	37	chr6	29578524	29578524	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctctccaaatacaccagtCtcccctacccacgccttagg	4	20	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29578524	A	A	29578524	1	1	118	0	1	0	0	0	0	0	0	0	6215	928	32	3		3	GABBR1	6	29578524	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	566432	29578524	141536543	369	111571											
MSH5	4439	broad.mit.edu	37	chr6	31727788	31727788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaggaatagacatgagGggcccaaaggctacatcttc	14	8	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31727788	T	T	31727788	1	4	118	0	1	0	0	0	0	0	0	0	9967	1247	43	2		2	MSH5	6	31727788	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2149264	31727788	139387279	370	111572											
ANKS1A	23294	broad.mit.edu	37	chr6	35053711	35053711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcggcgtgaggaaatccGcagtacgtgggccccactgg	17	11	0	1	rs143845391		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35053711	T	T	35053711	3	4	118	1	0	0	0	0	1	0	0	0	688	1087	38	3	3387	3	ANKS1A	6	35053711	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3325923	35053711	136061356	371	111573											
SCUBE3	222663	broad.mit.edu	37	chr6	35212536	35212536	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttctgcagccgctgtccAggaaacacaagcacagactt	8	13	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35212536	G	G	35212536	2	3	118	1	0	0	0	0	0	0	0	1	14059	175	7	5		5	SCUBE3	6	35212536	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	158825	35212536	135902531	372	111574											
FTSJD2	23070	broad.mit.edu	37	chr6	37427632	37427632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttttaaatgataattgtGtagagactgatgttgtggat	10	1	0	3	rs139305183	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37427632	T	T	37427632	1	4	118	0	1	0	0	0	0	0	0	0	6151	1392	48	3		3	FTSJD2	6	37427632	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2215096	37427632	133687435	373	111575											
FTSJD2	23070	broad.mit.edu	37	chr6	37430722	37430722	+	Frame_Shift_Del	DEL	C	-	-													tccgacgtcaacttggtggtCcccctggaggtgatcaaggg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37430722	-	-	37430722	7	5	118	1	0	1	0	1	0	0	0	0	6151	842	30	0	1489	0	FTSJD2	6	37430722	Frame_Shift_Del	DEL	C	TCGA-44-4112-01A-01D-1458-08	3090	37430722	133684345	374	111576											
MOCS1	4337	broad.mit.edu	37	chr6	39876768	39876768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggtgcctatggcacggCtcccaccccacgagatcccc	12	17	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39876768	A	A	39876768	1	1	118	0	1	0	0	0	0	0	0	0	9784	812	28	3		3	MOCS1	6	39876768	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2446046	39876768	131238299	375	111577											
TTBK1	84630	broad.mit.edu	37	chr6	43250288	43250288	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgccagagaccattctaggCcctggggacagagcagtgaa	14	11	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43250288	G	G	43250288	1	3	118	0	1	0	0	0	0	0	0	0	16802	754	26	4		4	TTBK1	6	43250288	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3373520	43250288	127864779	376	111578											
CAPN11	11131	broad.mit.edu	37	chr6	44150906	44150906	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctggtggccaggtatgcaGatgatgacctgatcatagac	12	9	1	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44150906	A	A	44150906	3	1	118	1	0	0	0	0	1	0	0	0	2650	942	33	4	2150	4	CAPN11	6	44150906	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	900618	44150906	126964161	377	111579											
DEFB112	245915	broad.mit.edu	37	chr6	50016257	50016257	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattttgttttacctgtgctGattttctctgtcccatgtcg	7	9	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50016257	T	T	50016257	2	4	118	1	0	0	0	0	0	0	0	1	4440	1280	45	3		3	DEFB112	6	50016257	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	5865351	50016257	121098810	378	111580											
TFAP2D	83741	broad.mit.edu	37	chr6	50696861	50696861	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtcgtctcataattttcatCagaatgtgaaatttcaaaac	5	7	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50696861	T	T	50696861	1	4	118	0	1	0	0	0	0	0	0	0	15913	841	29	4		4	TFAP2D	6	50696861	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	680604	50696861	120418206	379	111581											
EYS	346007	broad.mit.edu	37	chr6	64567628	64567628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatccaatgctttgatgagCatctgagacataaaactttg	7	9	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64567628	A	A	64567628	1	1	118	0	1	0	0	0	0	0	0	0	5375	725	25	3		3	EYS	6	64567628	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	13870767	64567628	106547439	380	111582											
B3GAT2	135152	broad.mit.edu	37	chr6	71604061	71604061	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctatgtagaagaagtaggGctggtagtggtgtaagattt	14	2	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71604061	C	C	71604061	1	2	118	0	1	0	0	0	0	0	0	0	1259	1218	42	4		4	B3GAT2	6	71604061	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	7036433	71604061	99511006	381	111583											
COL12A1	1303	broad.mit.edu	37	chr6	75848104	75848104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attactaatatagctgtagcCctattttttaaaaattaact	3	6	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75848104	A	A	75848104	1	1	118	0	1	0	0	0	0	0	0	0	3701	638	22	2		2	COL12A1	6	75848104	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4244043	75848104	95266963	382	111584											
FHL5	9457	broad.mit.edu	37	chr6	97052766	97052766	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattctaacgagtgctcctcCaagtgcttccactgcaagag	8	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97052766	T	T	97052766	2	4	118	1	0	0	0	0	0	0	0	1	5938	581	21	4		4	FHL5	6	97052766	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	21204662	97052766	74062301	383	111585											
HS3ST5	222537	broad.mit.edu	37	chr6	114405690	114405690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaacttcccgagccggcGtccaccgcatcacacccgct	9	19	1	1	rs112001782		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114405690	T	T	114405690	1	4	118	0	1	0	0	0	0	0	0	0	7435	1160	40	3		3	HS3ST5	6	114405690	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	17352924	114405690	56709377	384	111586											
THEMIS	387357	broad.mit.edu	37	chr6	128134882	128134882	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaatggttttcccaggctGtaaaatgctttggggcaggt	12	8	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128134882	C	C	128134882	3	2	118	1	0	0	0	0	1	0	0	0	15983	1386	48	4	1154	4	THEMIS	6	128134882	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	13729192	128134882	42980185	385	111587											
LAMA2	3908	broad.mit.edu	37	chr6	129649485	129649485	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccgcacccctggaccaacCctgggcacctgtgttccatg	11	17	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129649485	G	G	129649485	2	3	118	1	0	0	0	0	0	0	0	1	8678	610	22	4		4	LAMA2	6	129649485	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1514603	129649485	41465582	386	111588											
TMEM200A	114801	broad.mit.edu	37	chr6	130762209	130762209	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacgatcgcctctttctcGggttttcggagcagttttcg	10	10	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130762209	T	T	130762209	2	4	118	1	0	0	0	0	0	0	0	1	16246	1103	39	1		1	TMEM200A	6	130762209	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	1112724	130762209	40352858	387	111589											
MED23	9439	broad.mit.edu	37	chr6	131937143	131937143	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtggttcaaacagatcCtttaaagaaaataagaaaat	7	5	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131937143	A	A	131937143	5	1	118	1	0	0	0	0	0	0	1	0	9534	695	24	2	3435	2	MED23	6	131937143	Splice_Site	SNP	C	TCGA-44-4112-01A-01D-1458-08	1174934	131937143	39177924	388	111590											
TAAR2	9287	broad.mit.edu	37	chr6	132938808	132938808	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgcataggcctctgagaaGaccaccccgaaggcaaatgc	10	13	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132938808	T	T	132938808	2	4	118	1	0	0	0	0	0	0	0	1	15609	929	33	3		3	TAAR2	6	132938808	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	1001665	132938808	38176259	389	111591											
MAP3K5	4217	broad.mit.edu	37	chr6	136935100	136935100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctttgcactggaataaaCtctatacattaggatatttt	6	6	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136935100	A	A	136935100	1	1	118	0	1	0	0	0	0	0	0	0	9345	580	20	3		3	MAP3K5	6	136935100	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3996292	136935100	34179967	390	111592											
GPR126	57211	broad.mit.edu	37	chr6	142758528	142758528	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataagatttctctttaaagAtgtgtcagttggcttaaata	7	4	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142758528	T	T	142758528	1	4	118	0	1	0	0	0	0	0	0	0	6705	348	12	5		5	GPR126	6	142758528	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	5823428	142758528	28356539	391	111593											
HIVEP2	3097	broad.mit.edu	37	chr6	143081590	143081590	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccaacattcacaggcaaGgaggagaatctaggaggctg	14	9	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143081590	A	A	143081590	2	1	118	1	0	0	0	0	0	0	0	1	7254	987	35	4		4	HIVEP2	6	143081590	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	323062	143081590	28033477	392	111594											
SHPRH	257218	broad.mit.edu	37	chr6	146247376	146247376	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcacgcaaggtaggtggTatccctgggtgcctggctat	13	11	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146247376	A	A	146247376	2	1	118	1	0	0	0	0	0	0	0	1	14404	1628	57	5		5	SHPRH	6	146247376	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	3165786	146247376	24867691	393	111595											
GRM1	2911	broad.mit.edu	37	chr6	146720744	146720744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacctctgatgttgtcCgcatgcatgttggcgatggc	11	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146720744	A	A	146720744	3	1	118	1	0	0	0	0	1	0	0	0	6862	652	23	1	2595	1	GRM1	6	146720744	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	473368	146720744	24394323	394	111596											
STXBP5	134957	broad.mit.edu	37	chr6	147631360	147631360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttctaacgctgtgtgaaaCaccatacccaaatggtaagc	7	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147631360	T	T	147631360	3	4	118	1	0	0	0	0	1	0	0	0	15474	478	17	4	1096	4	STXBP5	6	147631360	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	910616	147631360	23483707	395	111597											
STXBP5	134957	broad.mit.edu	37	chr6	147680270	147680270	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagttcaagtgtaacaagcAttgacaaagaatcccgagaa	10	7	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147680270	C	C	147680270	3	2	118	1	0	0	0	0	1	0	0	0	15474	217	8	5	2446	5	STXBP5	6	147680270	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	48910	147680270	23434797	396	111598											
PNLDC1	154197	broad.mit.edu	37	chr6	160237602	160237602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgcccccacgaagccgCgtatgatgccttcctctgtg	10	14	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160237602	A	A	160237602	3	1	118	1	0	0	0	0	1	0	0	0	12243	768	27	3	1105	3	PNLDC1	6	160237602	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	12557332	160237602	10877465	397	111599											
LPA	4018	broad.mit.edu	37	chr6	160961338	160961338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatcagtgacttatgagtGgcaagaaacaaaattcacaa	8	6	2	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160961338	T	T	160961338	1	4	118	0	1	0	0	0	0	0	0	0	8990	1363	47	2		2	LPA	6	160961338	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	723736	160961338	10153729	398	111600											
LPA	4018	broad.mit.edu	37	chr6	161005990	161005990	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgagtctatgagaaatttgGacctaggaagtgagcttgta	12	5	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161005990	T	T	161005990	1	4	118	0	1	0	0	0	0	0	0	0	8990	1189	41	3		3	LPA	6	161005990	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	44652	161005990	10109077	399	111601											
LPA	4018	broad.mit.edu	37	chr6	161056025	161056025	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagtacacggaggcttccCccaacatggcagaactccgg	12	13	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161056025	G	G	161056025	1	3	118	0	1	0	0	0	0	0	0	0	8990	638	22	4		4	LPA	6	161056025	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	50035	161056025	10059042	400	111602											
PACRG	135138	broad.mit.edu	37	chr6	163149063	163149063	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagctctagccaaggtcctGccctcttcccgccccgcccc	8	22	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163149063	A	A	163149063	1	1	118	0	1	0	0	0	0	0	0	0	11464	1334	46	4		4	PACRG	6	163149063	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2093038	163149063	7966004	401	111603											
PDE10A	10846	broad.mit.edu	37	chr6	165802041	165802041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattactttctggcattaaTatagcacaaatacagcattc	4	9	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165802041	C	C	165802041	1	2	118	0	1	0	0	0	0	0	0	0	11724	1421	49	5		5	PDE10A	6	165802041	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2652978	165802041	5313026	402	111604											
PDE10A	10846	broad.mit.edu	37	chr6	165895690	165895690	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatactttggagaggaaacTcagtttttgccataatcttt	8	6	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165895690	C	C	165895690	1	2	118	0	1	0	0	0	0	0	0	0	11724	1566	54	5		5	PDE10A	6	165895690	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	93649	165895690	5219377	403	111605											
PDE10A	10846	broad.mit.edu	37	chr6	165956877	165956877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaaatgcttagtcttttGccgtaagatagaaaaagctg	8	5	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165956877	T	T	165956877	1	4	118	0	1	0	0	0	0	0	0	0	11724	1334	46	3		3	PDE10A	6	165956877	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	61187	165956877	5158190	404	111606											
THBS2	7058	broad.mit.edu	37	chr6	169632587	169632587	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagcacgccccgcaccccgCgcggagagcagcggcccagc	14	19	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169632587	G	G	169632587	1	3	118	0	1	0	0	0	0	0	0	0	15977	783	27	4		4	THBS2	6	169632587	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3675710	169632587	1482480	405	111607											
TBP	6908	broad.mit.edu	37	chr6	170873782	170873782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctcctctgccgtgtctctAtattttaatgtatttcacgc	6	11	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170873782	G	G	170873782	1	3	118	0	1	0	0	0	0	0	0	0	15766	464	16	5		5	TBP	6	170873782	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	1241195	170873782	241285	406	111608											
CARD11	84433	broad.mit.edu	37	chr7	2955025	2955025	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactggaggagaagagggagGgtcgggggaggactgttttg	21	3	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2955025	C	C	2955025	1	2	118	0	1	0	0	0	0	0	0	0	2671	1247	43	4		4	CARD11	7	2955025	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08		2955025	156183638	407	111609											
SDK1	221935	broad.mit.edu	37	chr7	4150218	4150218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagctcaccaggtaccaGcaggtgcacatggtctacat	10	14	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4150218	T	T	4150218	1	4	118	0	1	0	0	0	0	0	0	0	14081	986	34	3		3	SDK1	7	4150218	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1195193	4150218	154988445	408	111610											
SDK1	221935	broad.mit.edu	37	chr7	4247586	4247586	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcttctccctgattcctcCaggagggagcctttccacct	8	16	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4247586	T	T	4247586	1	4	118	0	1	0	0	0	0	0	0	0	14081	609	21	4		4	SDK1	7	4247586	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	97368	4247586	154891077	409	111611											
RBAK	57786	broad.mit.edu	37	chr7	5103997	5103997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagccaaaagggaaccCtcactgtacatcggagatca	8	13	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5103997	T	T	5103997	3	4	118	1	0	0	0	0	1	0	0	0	13208	681	24	4	924	4	RBAK	7	5103997	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	856411	5103997	154034666	410	111612											
WIPI2	26100	broad.mit.edu	37	chr7	5270433	5270433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgtggtgtgtccccagCctttgaagggtgacttcgtc	14	10	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5270433	A	A	5270433	1	1	118	0	1	0	0	0	0	0	0	0	17498	754	26	3		3	WIPI2	7	5270433	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	166436	5270433	153868230	411	111613											
TMEM195	392636	broad.mit.edu	37	chr7	15425242	15425242	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagactcatttttcttactGaaattcacactaagagatat	4	9	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15425242	T	T	15425242	1	4	118	0	1	0	0	0	0	0	0	0	16240	1305	45	3		3	TMEM195	7	15425242	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	10154809	15425242	143713421	412	111614											
AHR	196	broad.mit.edu	37	chr7	17375399	17375399	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattatatcattgtaactcaGagaccactaacgtaagcaca	6	9	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17375399	C	C	17375399	3	2	118	1	0	0	0	0	1	0	0	0	416	933	33	4	1183	4	AHR	7	17375399	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1950157	17375399	141763264	413	111615											
GPNMB	10457	broad.mit.edu	37	chr7	23306033	23306033	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtatagtgttcctgatattTttctaaaaagcaaatggcaa	7	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23306033	A	A	23306033	1	1	118	0	1	0	0	0	0	0	0	0	6685	1856	64	5		5	GPNMB	7	23306033	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	5930634	23306033	135832630	414	111616											
NPY	4852	broad.mit.edu	37	chr7	24329281	24329281	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagacaggtgcctggtggGaggcaccaccaggcttctag	15	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24329281	T	T	24329281	1	4	118	0	1	0	0	0	0	0	0	0	10702	1189	41	3		3	NPY	7	24329281	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1023248	24329281	134809382	415	111617											
PDE1C	5137	broad.mit.edu	37	chr7	32209435	32209435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacttctgagctatccagCtgtggcaattcatcagctag	9	10	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32209435	A	A	32209435	3	1	118	1	0	0	0	0	1	0	0	0	11729	812	28	3		3	PDE1C	7	32209435	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	7880154	32209435	126929228	416	111618											
NPSR1	387129	broad.mit.edu	37	chr7	34867133	34867133	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtgcagtgctgggcccTgtggcctgacgactcctact	13	12	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34867133	A	A	34867133	3	1	118	1	0	0	0	0	1	0	0	0	10695	1580	55	5	617	5	NPSR1	7	34867133	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	2657698	34867133	124271530	417	111619											
AOAH	313	broad.mit.edu	37	chr7	36589259	36589259	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttctgtagtgtttaatcCtggaactctccttaagggct	9	8	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36589259	G	G	36589259	1	3	118	0	1	0	0	0	0	0	0	0	728	696	24	4		4	AOAH	7	36589259	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1722126	36589259	122549404	418	111620											
TXNDC3	51314	broad.mit.edu	37	chr7	37927787	37927787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatctggaattatttgctGttatttgataacttttgaac	7	4	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37927787	T	T	37927787	1	4	118	0	1	0	0	0	0	0	0	0	16924	1392	48	3		3	TXNDC3	7	37927787	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1338528	37927787	121210876	419	111621											
GLI3	2737	broad.mit.edu	37	chr7	42005727	42005727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtagccgtgggctccccCgtcgctgcacctcctcgggg	13	19	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42005727	A	A	42005727	3	1	118	1	0	0	0	0	1	0	0	0	6503	652	23	1	1802	1	GLI3	7	42005727	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	4077940	42005727	117132936	420	111622											
HECW1	23072	broad.mit.edu	37	chr7	43447290	43447290	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggacaggagaggagatccaAgatcataggcaacaccgtga	13	8	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43447290	T	T	43447290	3	4	118	1	0	0	0	0	1	0	0	0	7109	72	3	5	783	5	HECW1	7	43447290	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	1441563	43447290	115691373	421	111623											
CAMK2B	816	broad.mit.edu	37	chr7	44293940	44293940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctctgaacctggccttgGgcgtggaggggaggtggcct	18	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44293940	T	T	44293940	1	4	118	0	1	0	0	0	0	0	0	0	2626	1247	43	2		2	CAMK2B	7	44293940	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	846650	44293940	114844723	422	111624											
DDX56	54606	broad.mit.edu	37	chr7	44611443	44611443	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtgcagggcagagatgcaTttaaggattcctggcaccct	12	9	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44611443	C	C	44611443	1	2	118	0	1	0	0	0	0	0	0	0	4407	1508	52	5		5	DDX56	7	44611443	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	317503	44611443	114527220	423	111625											
ABCA13	154664	broad.mit.edu	37	chr7	48318349	48318349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagatcttgccacatcaatgGactccattgtgaaacttctt	7	10	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48318349	T	T	48318349	3	4	118	1	0	0	0	0	1	0	0	0	31	1174	41	3	7457	3	ABCA13	7	48318349	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3706906	48318349	110820314	424	111626											
ABCA13	154664	broad.mit.edu	37	chr7	48550739	48550739	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgtcgccttccagttaacAgcttttactttccgcaagaa	6	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48550739	T	T	48550739	2	4	118	1	0	0	0	0	0	0	0	1	31	175	7	5		5	ABCA13	7	48550739	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	232390	48550739	110587924	425	111627											
ABCA13	154664	broad.mit.edu	37	chr7	48634509	48634509	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgttacacatggacattTcttaatctttacaacacaat	4	9	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48634509	G	G	48634509	1	3	118	0	1	0	0	0	0	0	0	0	31	1798	62	5		5	ABCA13	7	48634509	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	83770	48634509	110504154	426	111628											
VWC2	375567	broad.mit.edu	37	chr7	49842570	49842570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatacacatgcgtacacacGtgtgtaatctttcagccaca	6	12	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49842570	T	T	49842570	1	4	118	0	1	0	0	0	0	0	0	0	17370	1160	40	3		3	VWC2	7	49842570	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1208061	49842570	109296093	427	111629											
SEPT14	346288	broad.mit.edu	37	chr7	55865858	55865858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactccatctccttcctgacCcctccctgcagccacgcaaa	4	20	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55865858	A	A	55865858	1	1	118	0	1	0	0	0	0	0	0	0	14176	638	22	2		2	SEPT14	7	55865858	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	6023288	55865858	103272805	428	111630											
SEPT14	346288	broad.mit.edu	37	chr7	55912411	55912411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttccaattccagtctccCctgtaatagacatagagtca	5	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55912411	A	A	55912411	3	1	118	1	0	0	0	0	1	0	0	0	14176	637	22	2	1150	2	SEPT14	7	55912411	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	46553	55912411	103226252	429	111631											
ZNF716	441234	broad.mit.edu	37	chr7	57529052	57529052	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatactggagagaaaccCtacacatgtgaagaatgtgg	10	7	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57529052	A	A	57529052	2	1	118	1	0	0	0	0	0	0	0	1	18247	668	24	2		2	ZNF716	7	57529052	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1616641	57529052	101609611	430	111632											
ELN	2006	broad.mit.edu	37	chr7	73457081	73457081	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaagccctctggcttccGtggggccctccgctttgcaa	10	17	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73457081	T	T	73457081	1	4	118	0	1	0	0	0	0	0	0	0	5113	1160	40	3		3	ELN	7	73457081	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	15928029	73457081	85681582	431	111633											
PTPN12	5782	broad.mit.edu	37	chr7	77266396	77266396	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agattttttttttcctttttActgtagattttattgattaa	4	3	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77266396	T	T	77266396	1	4	118	0	1	0	0	0	0	0	0	0	12887	406	14	5		5	PTPN12	7	77266396	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	3809315	77266396	81872267	432	111634											
HGF	3082	broad.mit.edu	37	chr7	81331986	81331986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaataccaggacgatttgGaatggcacatccacgaccag	9	10	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81331986	T	T	81331986	3	4	118	1	0	0	0	0	1	0	0	0	7152	1174	41	3	92	3	HGF	7	81331986	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	4065590	81331986	77806677	433	111635											
DMTF1	9988	broad.mit.edu	37	chr7	86810589	86810592	+	Intron	DEL	TTAA	-	-													ggtttttagcattcattgttTtaattgattttttaaaaatt							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86810592	-	-	86810589	6	5	118	0	1	1	0	1	0	0	0	0	4632	1856	64	0		0	DMTF1	7	86810589	Intron	DEL	TTAA	TCGA-44-4112-01A-01D-1458-08	5478603	86810589	72328074	434	111636											
TFPI2	7980	broad.mit.edu	37	chr7	93518469	93518469	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaacttagattaaagaaaTacttttctgtggacccctca	7	8	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93518469	C	C	93518469	3	2	118	1	0	0	0	0	1	0	0	0	15932	1406	49	5	381	5	TFPI2	7	93518469	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	6707880	93518469	65620194	435	111637											
LMTK2	22853	broad.mit.edu	37	chr7	97816093	97816093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgacctggtttttggattGggtatatgttttctgagaat	11	4	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97816093	T	T	97816093	1	4	118	0	1	0	0	0	0	0	0	0	8933	1363	47	2		2	LMTK2	7	97816093	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4297624	97816093	61322570	436	111638											
CYP3A7	1551	broad.mit.edu	37	chr7	99329068	99329068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtgaatgatcctgagaGgttcaggaacgaattcttcc	10	7	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99329068	T	T	99329068	1	4	118	0	1	0	0	0	0	0	0	0	4214	1015	35	2		2	CYP3A7	7	99329068	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1512975	99329068	59809595	437	111639											
MUC17	140453	broad.mit.edu	37	chr7	100677932	100677932	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgaccacttattctcaaGccagttcatcttctacaact	4	13	4	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100677932	A	A	100677932	3	1	118	1	0	0	0	0	1	0	0	0	10068	971	34	4	3245	4	MUC17	7	100677932	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1348864	100677932	58460731	438	111640											
EMID2	136227	broad.mit.edu	37	chr7	101183242	101183242	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccagcccccgagagcacTccgccgacctggaatgagga	12	16	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101183242	G	G	101183242	2	3	118	1	0	0	0	0	0	0	0	1	5134	1538	54	5		5	EMID2	7	101183242	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	505310	101183242	57955421	439	111641											
CUX1	1523	broad.mit.edu	37	chr7	101870904	101870904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccggagctggacacctacGgcataaccaagcgggtgaag	13	13	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101870904	T	T	101870904	3	4	118	1	0	0	0	0	1	0	0	0	4097	1116	39	1	3537	1	CUX1	7	101870904	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	687662	101870904	57267759	440	111642											
RELN	5649	broad.mit.edu	37	chr7	103137039	103137039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaatcaaaatgttgtccaGtgcccactgagcacgctcca	7	14	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103137039	T	T	103137039	3	4	118	1	0	0	0	0	1	0	0	0	13328	1020	36	3	1295	3	RELN	7	103137039	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1266135	103137039	56001624	441	111643											
RELN	5649	broad.mit.edu	37	chr7	103159716	103159716	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctcccgtgactgattgctGgtagcaatctctgctcgatg	11	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103159716	C	C	103159716	1	2	118	0	1	0	0	0	0	0	0	0	13328	1363	47	4		4	RELN	7	103159716	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	22677	103159716	55978947	442	111644											
RELN	5649	broad.mit.edu	37	chr7	103160054	103160054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttttgagacaGggtcttgctctgtcacctag	8	7	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103160054	T	T	103160054	1	4	118	0	1	0	0	0	0	0	0	0	13328	1015	35	2		2	RELN	7	103160054	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	338	103160054	55978609	443	111645											
RELN	5649	broad.mit.edu	37	chr7	103557493	103557493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgactgtataaaataccccCaaatttctggtttgtgagaa	7	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103557493	A	A	103557493	1	1	118	0	1	0	0	0	0	0	0	0	13328	609	21	2		2	RELN	7	103557493	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	397439	103557493	55581170	444	111646											
C7orf60	154743	broad.mit.edu	37	chr7	112462461	112462461	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaggcatattaagaaCttcaagattatttccacttt	4	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112462461	T	T	112462461	1	4	118	0	1	0	0	0	0	0	0	0	2432	580	20	4		4	C7orf60	7	112462461	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	8904968	112462461	46676202	445	111647											
ST7	7982	broad.mit.edu	37	chr7	116774264	116774264	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaagtcaagaacctgtTgggtgccctacttctaacca	8	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116774264	G	G	116774264	1	3	118	0	1	0	0	0	0	0	0	0	15347	1827	63	5		5	ST7	7	116774264	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4311803	116774264	42364399	446	111648											
C7orf58	79974	broad.mit.edu	37	chr7	120911527	120911527	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttatagcttttgatctttTaaaattgtttgttgtatctt	5	3	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120911527	G	G	120911527	1	3	118	0	1	0	0	0	0	0	0	0	2430	1769	61	5		5	C7orf58	7	120911527	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4137263	120911527	38227136	447	111649											
LRRC4	64101	broad.mit.edu	37	chr7	127670602	127670602	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcgatggctgcacacAgaatccacacttgcgccgtg	11	14	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127670602	G	G	127670602	3	3	118	1	0	0	0	0	1	0	0	0	9084	188	7	5	1873	5	LRRC4	7	127670602	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	6759075	127670602	31468061	448	111650											
AKR1B15	441282	broad.mit.edu	37	chr7	134254141	134254141	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccttttcccagtattactAgctcattgctacactctttg	4	12	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134254141	T	T	134254141	1	4	118	0	1	0	0	0	0	0	0	0	468	435	15	5		5	AKR1B15	7	134254141	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	6583539	134254141	24884522	449	111651											
HIPK2	28996	broad.mit.edu	37	chr7	139285223	139285223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctggttggctgctgcCgcatcacgtgggccacaccc	14	14	1	0	rs56132157		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139285223	A	A	139285223	3	1	118	1	0	0	0	0	1	0	0	0	7184	652	23	1	1241	1	HIPK2	7	139285223	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	5031082	139285223	19853440	450	111652											
PRSS1	5644	broad.mit.edu	37	chr7	142459828	142459828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaccgcccctccagccaCtggcacgaagtgcctcatct	8	20	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142459828	A	A	142459828	3	1	118	1	0	0	0	0	1	0	0	0	12720	565	20	3	414	3	PRSS1	7	142459828	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3174605	142459828	16678835	451	111653											
CLCN1	1180	broad.mit.edu	37	chr7	143036571	143036571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaggaacttggatctcGtaacaccttccttcctttta	7	11	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143036571	T	T	143036571	1	4	118	0	1	0	0	0	0	0	0	0	3493	1160	40	3		3	CLCN1	7	143036571	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	576743	143036571	16102092	452	111654											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741276	146741276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcatttacatatatatGtatctatgcatagatacata	3	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146741276	T	T	146741276	1	4	118	0	1	0	0	0	0	0	0	0	3679	1392	48	3		3	CNTNAP2	7	146741276	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3704705	146741276	12397387	453	111655											
CNTNAP2	26047	broad.mit.edu	37	chr7	147914552	147914552	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcaccaccaaggcgccCtgcattctcctctacatcag	6	17	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147914552	G	G	147914552	2	3	118	1	0	0	0	0	0	0	0	1	3679	668	24	4		4	CNTNAP2	7	147914552	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1173276	147914552	11224111	454	111656											
KCNH2	3757	broad.mit.edu	37	chr7	150645550	150645550	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acccttgtccgtgcgcctgcGgaaggacaacttgcgcttgc	12	14	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150645550	C	C	150645550	3	2	118	1	0	0	0	0	1	0	0	0	8102	1116	39	4	825	4	KCNH2	7	150645550	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2730998	150645550	8493113	455	111657											
DPP6	1804	broad.mit.edu	37	chr7	153584797	153584797	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggccatgatcaagaccgCtaagatgcaggggaacgtga	13	8	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153584797	T	T	153584797	3	4	118	1	0	0	0	0	1	0	0	0	4770	797	28	4	31	4	DPP6	7	153584797	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	2939247	153584797	5553866	456	111658											
HTR5A	3361	broad.mit.edu	37	chr7	154862701	154862701	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggcaaagacgacctgcgccCcagctcgcccctgctctcgg	11	19	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154862701	G	G	154862701	3	3	118	1	0	0	0	0	1	0	0	0	7520	623	22	4	94	4	HTR5A	7	154862701	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1277904	154862701	4275962	457	111659											
PTPRN2	5799	broad.mit.edu	37	chr7	157997861	157997861	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaagccacgtccacacttAcctggctgggctggatgctt	10	13	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157997861	C	C	157997861	5	2	118	1	0	0	0	0	0	0	1	0	12916	405	14	5	2745	5	PTPRN2	7	157997861	Splice_Site	SNP	A	TCGA-44-4112-01A-01D-1458-08	3135160	157997861	1140802	458	111660											
DLGAP2	9228	broad.mit.edu	37	chr8	1581027	1581027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatcaatgggcaattcgagtCcgtgtgcgagtccgtcttca	12	10	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1581027	A	A	1581027	3	1	118	1	0	0	0	0	1	0	0	0	4600	855	30	3	1399	3	DLGAP2	8	1581027	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08		1581027	144782995	459	111661											
CSMD1	64478	broad.mit.edu	37	chr8	2965485	2965485	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattcccaagcttcaaatgTtcatattattatttagtgcc	4	8	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2965485	A	A	2965485	1	1	118	0	1	0	0	0	0	0	0	0	3978	1740	60	5		5	CSMD1	8	2965485	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1384458	2965485	143398537	460	111662											
CSMD1	64478	broad.mit.edu	37	chr8	3432521	3432521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgcattatcttcataCtgaaccggataattagggga	10	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3432521	A	A	3432521	3	1	118	1	0	0	0	0	1	0	0	0	3978	564	20	3	9461	3	CSMD1	8	3432521	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	467036	3432521	142931501	461	111663											
CSMD1	64478	broad.mit.edu	37	chr8	4645893	4645893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcacctgtcctcccctcaCaccagactggggagctcagg	9	16	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4645893	A	A	4645893	1	1	118	0	1	0	0	0	0	0	0	0	3978	493	17	3		3	CSMD1	8	4645893	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1213372	4645893	141718129	462	111664											
MCPH1	79648	broad.mit.edu	37	chr8	6377620	6377620	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattactttggaattcttaAgtaagcaaaaggctgtacca	7	6	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6377620	T	T	6377620	1	4	118	0	1	0	0	0	0	0	0	0	9491	87	3	5		5	MCPH1	8	6377620	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	1731727	6377620	139986402	463	111665											
RP1L1	94137	broad.mit.edu	37	chr8	10468146	10468146	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcctggccacaggtccttCgagatgctgagcagctcctg	11	14	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10468146	A	A	10468146	2	1	118	1	0	0	0	0	0	0	0	1	13644	871	31	3		3	RP1L1	8	10468146	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	4090526	10468146	135895876	464	111666											
AMAC1L2	83650	broad.mit.edu	37	chr8	11188891	11188891	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacttaaactgcgtggcgaCccccttctgggacctcctga	9	15	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11188891	T	T	11188891	2	4	118	1	0	0	0	0	0	0	0	1	560	506	18	4		4	AMAC1L2	8	11188891	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	720745	11188891	135175131	465	111667											
HR	55806	broad.mit.edu	37	chr8	21976735	21976735	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcaccaggatgctgacCaggtcggccacctccacaca	10	16	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21976735	G	G	21976735	2	3	118	1	0	0	0	0	0	0	0	1	7414	581	21	4		4	HR	8	21976735	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	10787844	21976735	124387287	466	111668											
HR	55806	broad.mit.edu	37	chr8	21977932	21977932	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtccgagggggctcagcGcctgcacctggcctccaagt	15	14	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21977932	A	A	21977932	3	1	118	1	0	0	0	0	1	0	0	0	7414	1087	38	4	902	4	HR	8	21977932	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1197	21977932	124386090	467	111669											
PIWIL2	55124	broad.mit.edu	37	chr8	22175745	22175745	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaggagattgtggacaGcctgaagctatgcctcgtgg	14	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22175745	C	C	22175745	3	2	118	1	0	0	0	0	1	0	0	0	12053	971	34	4	2434	4	PIWIL2	8	22175745	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	197813	22175745	124188277	468	111670											
BIN3	55909	broad.mit.edu	37	chr8	22487494	22487494	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttttttaagggctcgatCacagtcttctggatctggtt	9	9	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22487494	A	A	22487494	2	1	118	1	0	0	0	0	0	0	0	1	1440	813	29	3		3	BIN3	8	22487494	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	311749	22487494	123876528	469	111671											
RHOBTB2	23221	broad.mit.edu	37	chr8	22863618	22863618	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttggacctgcgctacgctGacctggaggctgtcaacagg	14	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22863618	T	T	22863618	3	4	118	1	0	0	0	0	1	0	0	0	13443	1290	45	3	537	3	RHOBTB2	8	22863618	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	376124	22863618	123500404	470	111672											
C8orf80	389643	broad.mit.edu	37	chr8	27891295	27891295	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgcattgccctggccaaaGatcactaccaagaatcacag	7	12	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27891295	A	A	27891295	1	1	118	0	1	0	0	0	0	0	0	0	2465	957	33	4		4	C8orf80	8	27891295	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	5027677	27891295	118472727	471	111673											
FBXO16	157574	broad.mit.edu	37	chr8	28309761	28309761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcatggagcttcttacCcttgctggacagtctccatg	10	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28309761	A	A	28309761	3	1	118	1	0	0	0	0	1	0	0	0	5786	637	22	2	154	2	FBXO16	8	28309761	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	418466	28309761	118054261	472	111674											
TMEM66	51669	broad.mit.edu	37	chr8	29924385	29924385	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatatccttgttgtcctgtAaaagcactgccaaaaccaga	6	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29924385	G	G	29924385	2	3	118	1	0	0	0	0	0	0	0	1	16318	359	13	5		5	TMEM66	8	29924385	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	1614624	29924385	116439637	473	111675											
NRG1	3084	broad.mit.edu	37	chr8	31498156	31498156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaacagcaccagccgcgCgccggccgccttccgagcct	11	21	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31498156	A	A	31498156	3	1	118	1	0	0	0	0	1	0	0	0	10742	768	27	3	658	3	NRG1	8	31498156	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1573771	31498156	114865866	474	111676											
UNC5D	137970	broad.mit.edu	37	chr8	35606200	35606200	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaagaagaggacacagcAgggcaaatgggaggtgagac	15	5	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35606200	C	C	35606200	3	2	118	1	0	0	0	0	1	0	0	0	17121	188	7	5	1968	5	UNC5D	8	35606200	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	4108044	35606200	110757822	475	111677											
KCNU1	157855	broad.mit.edu	37	chr8	36691143	36691143	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaacgttcatttctggatCtgcaatgaagtgggaggatc	11	8	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36691143	G	G	36691143	3	3	118	1	0	0	0	0	1	0	0	0	8163	913	32	4	1220	4	KCNU1	8	36691143	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1084943	36691143	109672879	476	111678											
KCNU1	157855	broad.mit.edu	37	chr8	36694374	36694374	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaacatcatctgctttgctGaattaaaacttggatttatc	5	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36694374	T	T	36694374	4	4	118	1	0	0	0	0	0	1	0	0	8163	1291	45	3	1483	3	KCNU1	8	36694374	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3231	36694374	109669648	477	111679											
ADAM18	8749	broad.mit.edu	37	chr8	39502998	39502998	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaatcatgaagcagtgtaaGatgttttcttaattaatttc	7	4	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39502998	T	T	39502998	1	4	118	0	1	0	0	0	0	0	0	0	239	957	33	3		3	ADAM18	8	39502998	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2808624	39502998	106861024	478	111680											
ADAM18	8749	broad.mit.edu	37	chr8	39581361	39581361	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtttttcatagttttcacCactgtgatctttaaaagaaa	5	8	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39581361	A	A	39581361	2	1	118	1	0	0	0	0	0	0	0	1	239	581	21	2		2	ADAM18	8	39581361	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	78363	39581361	106782661	479	111681											
ANK1	286	broad.mit.edu	37	chr8	41551533	41551533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggggcggtggaacttccGgcgccggggctccacggtga	18	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41551533	A	A	41551533	3	1	118	1	0	0	0	0	1	0	0	0	620	1115	39	4	2612	4	ANK1	8	41551533	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1970172	41551533	104812489	480	111682											
ANK1	286	broad.mit.edu	37	chr8	41553923	41553923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccagtgctatgatcctgCtggccaggccctcctcctcg	10	18	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41553923	A	A	41553923	3	1	118	1	0	0	0	0	1	0	0	0	620	797	28	3	3121	3	ANK1	8	41553923	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	2390	41553923	104810099	481	111683											
ANK1	286	broad.mit.edu	37	chr8	41581079	41581079	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtttctatctgggctcCccgatccagcagcagccgca	10	15	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41581079	A	A	41581079	4	1	118	1	0	0	0	0	0	1	0	0	620	632	22	2	5355	2	ANK1	8	41581079	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	27156	41581079	104782943	482	111684											
ANK1	286	broad.mit.edu	37	chr8	41584919	41584919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccgcaatttaagaaaggcCtacaccagcacaacgtcctc	6	15	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41584919	A	A	41584919	1	1	118	0	1	0	0	0	0	0	0	0	620	696	24	2		2	ANK1	8	41584919	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3840	41584919	104779103	483	111685											
PRKDC	5591	broad.mit.edu	37	chr8	48744305	48744305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgtctggcaggaagcCtgttcacttcgtctgtatcc	12	11	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48744305	A	A	48744305	1	1	118	0	1	0	0	0	0	0	0	0	12627	696	24	2		2	PRKDC	8	48744305	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	7159386	48744305	97619717	484	111686											
PRKDC	5591	broad.mit.edu	37	chr8	48775080	48775080	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctctcctgccatgttctCtgtaaatgcatcgtagcaca	6	12	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48775080	A	A	48775080	4	1	118	1	0	0	0	0	0	1	0	0	12627	922	32	3	6789	3	PRKDC	8	48775080	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	30775	48775080	97588942	485	111687											
SNTG1	54212	broad.mit.edu	37	chr8	51449384	51449384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcggtgagtccgtgtttaGgagttatgactgttttgttt	13	4	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51449384	T	T	51449384	1	4	118	0	1	0	0	0	0	0	0	0	14988	1015	35	2		2	SNTG1	8	51449384	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2674304	51449384	94914638	486	111688											
SNTG1	54212	broad.mit.edu	37	chr8	51664532	51664532	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagatattaattccaccgActtacattgttttttttccc	4	10	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51664532	T	T	51664532	1	4	118	0	1	0	0	0	0	0	0	0	14988	290	10	5		5	SNTG1	8	51664532	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	215148	51664532	94699490	487	111689											
NKAIN3	286183	broad.mit.edu	37	chr8	63768830	63768830	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattggagaaggcttgagaGccctctggaccagattataa	11	7	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63768830	A	A	63768830	1	1	118	0	1	0	0	0	0	0	0	0	10532	986	34	4		4	NKAIN3	8	63768830	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	12104298	63768830	82595192	488	111690											
ADHFE1	137872	broad.mit.edu	37	chr8	67364387	67364387	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagaacaggaggcccacattCtgccagcacgtgaaacatga	10	11	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67364387	A	A	67364387	1	1	118	0	1	0	0	0	0	0	0	0	314	928	32	3		3	ADHFE1	8	67364387	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3595557	67364387	78999635	489	111691											
MSC	9242	broad.mit.edu	37	chr8	72754875	72754875	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatttaacgaataatcccaTcaagtgagttccagtccgat	7	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72754875	C	C	72754875	1	2	118	0	1	0	0	0	0	0	0	0	9962	1450	50	5		5	MSC	8	72754875	3'UTR	SNP	T	TCGA-44-4112-01A-01D-1458-08	5390488	72754875	73609147	490	111692											
TRPA1	8989	broad.mit.edu	37	chr8	72948572	72948572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaagtaaacagcaattgCtccacattgccactgcagat	7	10	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72948572	A	A	72948572	3	1	118	1	0	0	0	0	1	0	0	0	16702	797	28	3	881	3	TRPA1	8	72948572	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	193697	72948572	73415450	491	111693											
STAU2	27067	broad.mit.edu	37	chr8	74515888	74515888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcttaagtcctagtttgCctttcgcccaaatgcctatt	6	12	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74515888	A	A	74515888	1	1	118	0	1	0	0	0	0	0	0	0	15391	754	26	3		3	STAU2	8	74515888	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1567316	74515888	71848134	492	111694											
ZFHX4	79776	broad.mit.edu	37	chr8	77766283	77766283	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacggatgcagctaaaaacGctgctgcccctgcagcaagt	10	12	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77766283	C	C	77766283	3	2	118	1	0	0	0	0	1	0	0	0	17761	1087	38	4	7160	4	ZFHX4	8	77766283	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3250395	77766283	68597739	493	111695											
ZFAND1	79752	broad.mit.edu	37	chr8	82615028	82615028	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atataaaggacaatcctcctTagcaatccaggtttccaaag	6	10	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82615028	A	A	82615028	4	1	118	1	0	0	0	0	0	1	0	0	17752	1763	61	5	101	5	ZFAND1	8	82615028	Nonsense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	4848745	82615028	63748994	494	111696											
CNGB3	54714	broad.mit.edu	37	chr8	87738644	87738644	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttttttgtgttatgtgacTattgaattttttctgccctt	7	5	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87738644	A	A	87738644	1	1	118	0	1	0	0	0	0	0	0	0	3633	1537	53	5		5	CNGB3	8	87738644	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	5123616	87738644	58625378	495	111697											
MMP16	4325	broad.mit.edu	37	chr8	89209242	89209242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaaatattggaggagtgGggttaaattaggttatataa	12	0	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89209242	T	T	89209242	1	4	118	0	1	0	0	0	0	0	0	0	9748	1247	43	2		2	MMP16	8	89209242	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1470598	89209242	57154780	496	111698											
MMP16	4325	broad.mit.edu	37	chr8	89339218	89339218	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgggacccaggctgctctGagctacaaggatcccaggag	14	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89339218	A	A	89339218	1	1	118	0	1	0	0	0	0	0	0	0	9748	1305	45	4		4	MMP16	8	89339218	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	129976	89339218	57024804	497	111699											
HRSP12	10247	broad.mit.edu	37	chr8	99129187	99129187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttagctggggctccggccCggagtggccccaaccccgaa	14	15	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99129187	A	A	99129187	1	1	118	0	1	0	0	0	0	0	0	0	7427	667	23	1		1	HRSP12	8	99129187	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	9789969	99129187	47234835	498	111700											
RGS22	26166	broad.mit.edu	37	chr8	101075826	101075826	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgctctctggtccagcgctCtcattctttgaacttaaact	6	13	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101075826	G	G	101075826	3	3	118	1	0	0	0	0	1	0	0	0	13414	912	32	4	2704	4	RGS22	8	101075826	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1946639	101075826	45288196	499	111701											
RRM2B	50484	broad.mit.edu	37	chr8	103237348	103237348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcgcttaaaaactgcctgTcatgtaacaaacaggtcaga	7	9	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103237348	A	A	103237348	1	1	118	0	1	0	0	0	0	0	0	0	13794	1682	58	5		5	RRM2B	8	103237348	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2161522	103237348	43126674	500	111702											
CSMD3	114788	broad.mit.edu	37	chr8	113267393	113267393	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtttttatattaagccaActataggttataggataaag	7	4	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113267393	T	T	113267393	1	4	118	0	1	0	0	0	0	0	0	0	3980	58	2	5		5	CSMD3	8	113267393	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	10030045	113267393	33096629	501	111703											
CSMD3	114788	broad.mit.edu	37	chr8	113421167	113421167	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaatgggatcctgagagGgaagataacagagaagattg	14	5	0	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113421167	T	T	113421167	2	4	118	1	0	0	0	0	0	0	0	1	3980	1219	43	2		2	CSMD3	8	113421167	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	153774	113421167	32942855	502	111704											
CSMD3	114788	broad.mit.edu	37	chr8	113568851	113568851	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttccattaattttcttttGacaaattcaagctatgagtt	4	6	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113568851	T	T	113568851	1	4	118	0	1	0	0	0	0	0	0	0	3980	1305	45	3		3	CSMD3	8	113568851	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	147684	113568851	32795171	503	111705											
CSMD3	114788	broad.mit.edu	37	chr8	113657364	113657364	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgggttacatcaacagtcCatgtacaattcagagaattt	7	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113657364	T	T	113657364	4	4	118	1	0	0	0	0	0	1	0	0	3980	595	21	4	8047	4	CSMD3	8	113657364	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	88513	113657364	32706658	504	111706											
TRPS1	7227	broad.mit.edu	37	chr8	116430678	116430678	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaccggagcctctacgCctctgaaacaggggaaaaaa	9	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116430678	T	T	116430678	2	4	118	1	0	0	0	0	0	0	0	1	16718	738	26	4		4	TRPS1	8	116430678	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	2773314	116430678	29933344	505	111707											
TRPS1	7227	broad.mit.edu	37	chr8	116631413	116631413	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaattgatgtcctgCagcacaccagaaaacacaga	8	10	0	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116631413	A	A	116631413	2	1	118	1	0	0	0	0	0	0	0	1	16718	697	25	3		3	TRPS1	8	116631413	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	200735	116631413	29732609	506	111708											
TAF2	6873	broad.mit.edu	37	chr8	120774751	120774781	+	Frame_Shift_Del	DEL	TTATCCAAAGTTCTAACTTCATTATTCACAC	-	-													gtcgcacatcaggatttaagTtatccaaagttctaacttca					rs117420905	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120774781	-	-	120774751	7	5	118	1	0	1	0	1	0	0	0	0	15643	1725	60	0	1169	0	TAF2	8	120774751	Frame_Shift_Del	DEL	TTATCCAAAGTTCTAACTTCATTATTCACAC	TCGA-44-4112-01A-01D-1458-08	4143338	120774751	25589271	507	111709											
COL14A1	7373	broad.mit.edu	37	chr8	121170441	121170441	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatttcatggaaggctccaaGagggaaatttggtggttaca	13	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121170441	C	C	121170441	3	2	118	1	0	0	0	0	1	0	0	0	3703	942	33	4	167	4	COL14A1	8	121170441	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	395690	121170441	25193581	508	111710											
FER1L6	654463	broad.mit.edu	37	chr8	124988046	124988046	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagatttgtcttatattggGatctttctttctgcctccaa	6	9	5	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124988046	T	T	124988046	1	4	118	0	1	0	0	0	0	0	0	0	5872	1189	41	3		3	FER1L6	8	124988046	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3817605	124988046	21375976	509	111711											
FER1L6	654463	broad.mit.edu	37	chr8	125115354	125115354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgttacttttagaaaatGcttccctaactgttagggtc	7	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125115354	T	T	125115354	1	4	118	0	1	0	0	0	0	0	0	0	5872	1334	46	3		3	FER1L6	8	125115354	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	127308	125115354	21248668	510	111712											
ADCY8	114	broad.mit.edu	37	chr8	131833728	131833728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggagacctatgagaaaaCtgaggttcagaaaggagtgg	14	5	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131833728	A	A	131833728	1	1	118	0	1	0	0	0	0	0	0	0	300	580	20	3		3	ADCY8	8	131833728	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	6718374	131833728	14530294	511	111713											
ADCY8	114	broad.mit.edu	37	chr8	132002963	132002963	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgaggcaaatgtcatccCtttggagagggcttctttca	10	9	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132002963	G	G	132002963	1	3	118	0	1	0	0	0	0	0	0	0	300	696	24	4		4	ADCY8	8	132002963	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	169235	132002963	14361059	512	111714											
ADCY8	114	broad.mit.edu	37	chr8	132052591	132052591	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagctccatggctctgggccGcagggaaggaggcccagaac	16	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132052591	C	C	132052591	1	2	118	0	1	0	0	0	0	0	0	0	300	1102	38	4		4	ADCY8	8	132052591	5'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	49628	132052591	14311431	513	111715											
COL22A1	169044	broad.mit.edu	37	chr8	139890364	139890364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgacctcctcctgcgagCcaaagagtcccaactcgaag	8	16	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139890364	A	A	139890364	3	1	118	1	0	0	0	0	1	0	0	0	3713	739	26	3	4845	3	COL22A1	8	139890364	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	7837773	139890364	6473658	514	111716											
LY6D	8581	broad.mit.edu	37	chr8	143866996	143866996	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagggacacctggacagatGctacccacctgtgttcgtgg	12	13	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143866996	C	C	143866996	1	2	118	0	1	0	0	0	0	0	0	0	9178	1334	46	4		4	LY6D	8	143866996	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3976632	143866996	2497026	515	111717											
ZFP41	286128	broad.mit.edu	37	chr8	144332252	144332252	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggttcccgtgttcattcCttttcagaggaagaaaccct	11	10	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144332252	T	T	144332252	3	4	118	1	0	0	0	0	1	0	0	0	17775	681	24	4	241	4	ZFP41	8	144332252	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	465256	144332252	2031770	516	111718											
FAM83H	286077	broad.mit.edu	37	chr8	144808840	144808840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgcccctgcgctccgGcacggggggcaccggactgc	17	16	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144808840	T	T	144808840	3	4	118	1	0	0	0	0	1	0	0	0	5693	1203	42	3	752	3	FAM83H	8	144808840	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	476588	144808840	1555182	517	111719											
SCRIB	23513	broad.mit.edu	37	chr8	144886067	144886067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgccaggatgcggtccCcaacccgcaggccgctgcga	12	17	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144886067	A	A	144886067	3	1	118	1	0	0	0	0	1	0	0	0	14050	623	22	2	1863	2	SCRIB	8	144886067	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	77227	144886067	1477955	518	111720											
PLEC	5339	broad.mit.edu	37	chr8	144998070	144998070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttcagccgctcgacttcCtccagcgccgccttccgctg	9	19	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144998070	A	A	144998070	3	1	118	1	0	0	0	0	1	0	0	0	12147	680	24	2	7624	2	PLEC	8	144998070	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	112003	144998070	1365952	519	111721											
PARP10	84875	broad.mit.edu	37	chr8	145058149	145058149	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtgagggccacaggatGtgctgagggctcccagggag	17	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145058149	A	A	145058149	1	1	118	0	1	0	0	0	0	0	0	0	11549	1392	48	4		4	PARP10	8	145058149	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	60079	145058149	1305873	520	111722											
MAF1	84232	broad.mit.edu	37	chr8	145160669	145160669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcccacatcattggcaGgtgaggcaggctgggggggc	18	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145160669	T	T	145160669	3	4	118	1	0	0	0	0	1	0	0	0	9244	1014	35	2	85	2	MAF1	8	145160669	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	102520	145160669	1203353	521	111723											
KIAA1432	57589	broad.mit.edu	37	chr9	5762559	5762559	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggctcgtggtgcagagagcAttatgttaaacctggcagga	14	7	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5762559	G	G	5762559	3	3	118	1	0	0	0	0	1	0	0	0	8303	217	8	5	1840	5	KIAA1432	9	5762559	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08		5762559	135450872	522	111724											
TPD52L3	89882	broad.mit.edu	37	chr9	6330811	6330811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggaaggcttgtgttaGggacaatctcagactattat	10	6	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6330811	T	T	6330811	1	4	118	0	1	0	0	0	0	0	0	0	16524	1015	35	2		2	TPD52L3	9	6330811	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	568252	6330811	134882620	523	111725											
GLDC	2731	broad.mit.edu	37	chr9	6606508	6606508	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttcagattcacctccaatCagtttggaagtgagaaagag	10	7	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6606508	A	A	6606508	1	1	118	0	1	0	0	0	0	0	0	0	6497	841	29	3		3	GLDC	9	6606508	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	275697	6606508	134606923	524	111726											
FREM1	158326	broad.mit.edu	37	chr9	14812842	14812842	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcacggcctctgagataAcatctctctgagagaactga	9	10	4	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14812842	T	T	14812842	3	4	118	1	0	0	0	0	1	0	0	0	6104	43	2	5	3816	5	FREM1	9	14812842	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	8206334	14812842	126400589	525	111727											
HAUS6	54801	broad.mit.edu	37	chr9	19078160	19078160	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggggagggcaggggcaagTcaacattacttactggagtc	16	8	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19078160	A	A	19078160	1	1	118	0	1	0	0	0	0	0	0	0	7036	1682	58	5		5	HAUS6	9	19078160	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4265318	19078160	122135271	526	111728											
DDX58	23586	broad.mit.edu	37	chr9	32487951	32487951	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggagatacctggggcaGtgggcctgaagatcctccaa	13	10	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32487951	A	A	32487951	2	1	118	1	0	0	0	0	0	0	0	1	4408	1020	36	4		4	DDX58	9	32487951	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	13409791	32487951	108725480	527	111729											
DCTN3	11258	broad.mit.edu	37	chr9	34621452	34621452	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttagtttcaagtaggacCtctcagggcaagatgctgga	11	9	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34621452	A	A	34621452	1	1	118	0	1	0	0	0	0	0	0	0	4341	696	24	2		2	DCTN3	9	34621452	5'Flank	SNP	C	TCGA-44-4112-01A-01D-1458-08	2133501	34621452	106591979	528	111730											
SIT1	27240	broad.mit.edu	37	chr9	35650214	35650214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagttggatcctgctgGtctggctctgggtcttgaga	14	9	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35650214	T	T	35650214	3	4	118	1	0	0	0	0	1	0	0	0	14457	1252	44	3	274	3	SIT1	9	35650214	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1028762	35650214	105563217	529	111731											
TLN1	7094	broad.mit.edu	37	chr9	35718871	35718871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctccccactggcctggcCcacgttcccagctgcttgca	9	19	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35718871	A	A	35718871	3	1	118	1	0	0	0	0	1	0	0	0	16070	623	22	2	5856	2	TLN1	9	35718871	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	68657	35718871	105494560	530	111732											
ALDH1B1	219	broad.mit.edu	37	chr9	38395968	38395969	+	Missense_Mutation	DNP	GA	TG	TG													tggctgaaggtgaccgggctGatgtggatcgggccgtgaaa							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	38395969	TG	TG	38395968	3	4	118	1	0	0	0	0	1	0	0	0	493	1290	45	3	225	3	ALDH1B1	9	38395968	Missense_Mutation	DNP	GA	TCGA-44-4112-01A-01D-1458-08	2677097	38395968	102817463	531	111733											
FAM75A6	389730	broad.mit.edu	37	chr9	43629263	43629263	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgctctggcagagccttacCtctcagactgtggtttttca	10	11	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43629263	G	G	43629263	3	3	118	1	0	0	0	0	1	0	0	0	5674	695	24	4	3796	4	FAM75A6	9	43629263	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	5233295	43629263	97584168	532	111734											
FOXD4L5	653427	broad.mit.edu	37	chr9	70177793	70177794	+	Frame_Shift_Ins	INS	-	A	A													gggaagcgcaaccccgccccINSaccgggccacctgcagcccc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70177794	A	A	70177793	7	5	118	1	0	1	1	0	0	0	0	0	6062	595	21	0	1063	0	FOXD4L5	9	70177793	Frame_Shift_Ins	INS	-	TCGA-44-4112-01A-01D-1458-08	26548530	70177793	71035638	533	111735											
APBA1	320	broad.mit.edu	37	chr9	72082745	72082745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagatgtcctcaccttgatCctgcttacggcttcctgggc	9	15	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72082745	A	A	72082745	3	1	118	1	0	0	0	0	1	0	0	0	758	854	30	3	1073	3	APBA1	9	72082745	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1904952	72082745	69130686	534	111736											
TRPM3	80036	broad.mit.edu	37	chr9	73399169	73399169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccttccactatgagtgCcaccacaggaacaccttgac	6	16	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73399169	A	A	73399169	3	1	118	1	0	0	0	0	1	0	0	0	16712	739	26	3	4243	3	TRPM3	9	73399169	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1316424	73399169	67814262	535	111737											
TRPM3	80036	broad.mit.edu	37	chr9	73478056	73478056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaggttaaagtgaaccCctggtattagtcactattgg	11	6	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73478056	A	A	73478056	1	1	118	0	1	0	0	0	0	0	0	0	16712	638	22	2		2	TRPM3	9	73478056	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	78887	73478056	67735375	536	111738											
TMEM2	23670	broad.mit.edu	37	chr9	74300223	74300223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtatgaattgttcaagcaCcccaaggccctgtccagcag	10	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74300223	A	A	74300223	3	1	118	1	0	0	0	0	1	0	0	0	16244	507	18	3	113	3	TMEM2	9	74300223	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	822167	74300223	66913208	537	111739											
TRPM6	140803	broad.mit.edu	37	chr9	77376768	77376768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagttgacaacagtaagtGgggaacattttgttttacag	11	4	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77376768	T	T	77376768	1	4	118	0	1	0	0	0	0	0	0	0	16715	1363	47	2		2	TRPM6	9	77376768	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3076545	77376768	63836663	538	111740											
CEP78	84131	broad.mit.edu	37	chr9	80879270	80879270	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgacattcgtccctccatGactttaatggtgttttgctg	8	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80879270	T	T	80879270	1	4	118	0	1	0	0	0	0	0	0	0	3292	1305	45	3		3	CEP78	9	80879270	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3502502	80879270	60334161	539	111741											
SPIN1	10927	broad.mit.edu	37	chr9	91025681	91025681	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattaccaaatccattataGccatccccactgccaccaaa	2	17	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91025681	A	A	91025681	1	1	118	0	1	0	0	0	0	0	0	0	15170	986	34	4		4	SPIN1	9	91025681	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	10146411	91025681	50187750	540	111742											
ALDOB	229	broad.mit.edu	37	chr9	104190579	104190579	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggctcacaatatttcagtGactggcccaaggtcacagtt	10	10	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104190579	T	T	104190579	1	4	118	0	1	0	0	0	0	0	0	0	508	1305	45	3		3	ALDOB	9	104190579	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	13164898	104190579	37022852	541	111743											
RNF20	56254	broad.mit.edu	37	chr9	104319803	104319803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgtcagagcgtatcaaGtccaatcagatccataagtt	7	10	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104319803	T	T	104319803	3	4	118	1	0	0	0	0	1	0	0	0	13584	1020	36	3	2365	3	RNF20	9	104319803	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	129224	104319803	36893628	542	111744											
OR13C4	138804	broad.mit.edu	37	chr9	107288801	107288801	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgtgtcttcctgtggcCgagttcgttcgcaagatggt	13	10	1	1	rs146391633		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107288801	T	T	107288801	2	4	118	1	0	0	0	0	0	0	0	1	11030	639	23	4		4	OR13C4	9	107288801	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	2968998	107288801	33924630	543	111745											
MUSK	4593	broad.mit.edu	37	chr9	113459434	113459434	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaagattaatttaggtactCttgcactatttcatttaata	5	5	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113459434	G	G	113459434	1	3	118	0	1	0	0	0	0	0	0	0	10083	928	32	4		4	MUSK	9	113459434	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	6170633	113459434	27753997	544	111746											
SUSD1	64420	broad.mit.edu	37	chr9	114820914	114820914	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaggaagcgccttcagaatCacaagaaaatgtgctttgga	12	7	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114820914	T	T	114820914	3	4	118	1	0	0	0	0	1	0	0	0	15525	826	29	4	356	4	SUSD1	9	114820914	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1361480	114820914	26392517	545	111747											
PTGS1	5742	broad.mit.edu	37	chr9	125145835	125145835	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtagaagaggcgcctgtGttgatgcactacccccgagg	14	11	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125145835	T	T	125145835	2	4	118	1	0	0	0	0	0	0	0	1	12861	1364	48	3		3	PTGS1	9	125145835	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	10324921	125145835	16067596	546	111748											
NUP188	23511	broad.mit.edu	37	chr9	131720382	131720382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtaaaattgagtgacaGcttcttgacctcattttcct	7	8	2	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131720382	T	T	131720382	1	4	118	0	1	0	0	0	0	0	0	0	10853	986	34	3		3	NUP188	9	131720382	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	6574547	131720382	9493049	547	111749											
RALGDS	5900	broad.mit.edu	37	chr9	135982745	135982745	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtctgggctggtgctggGgaagctgaggatgcagcttg	19	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135982745	A	A	135982745	1	1	118	0	1	0	0	0	0	0	0	0	13124	1247	43	4		4	RALGDS	9	135982745	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4262363	135982745	5230686	548	111750											
KCNT1	57582	broad.mit.edu	37	chr9	138647117	138647117	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacccaggctcggtgagcaCtgaggacatacccagtctca	11	13	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138647117	T	T	138647117	1	4	118	0	1	0	0	0	0	0	0	0	8161	580	20	4		4	KCNT1	9	138647117	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2664372	138647117	2566314	549	111751											
CAMSAP1	157922	broad.mit.edu	37	chr9	138713801	138713801	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggcgctgccttgccgaCagcgcctccatcttcttctt	8	16	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138713801	A	A	138713801	2	1	118	1	0	0	0	0	0	0	0	1	2637	465	17	3		3	CAMSAP1	9	138713801	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	66684	138713801	2499630	550	111752											
FBXW5	54461	broad.mit.edu	37	chr9	139836896	139836896	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaacagccgcttcaccacgTtgacgttctctgactccaca	7	15	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139836896	C	C	139836896	3	2	118	1	0	0	0	0	1	0	0	0	5825	1725	60	5	1018	5	FBXW5	9	139836896	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	1123095	139836896	1376535	551	111753											
FAM166A	401565	broad.mit.edu	37	chr9	140138567	140138567	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagggtgagcaggtagagcCgtccctccccacattggccg	14	13	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140138567	T	T	140138567	1	4	118	0	1	0	0	0	0	0	0	0	5526	667	23	4		4	FAM166A	9	140138567	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	301671	140138567	1074864	552	111754											
UCN3	114131	broad.mit.edu	37	chr10	5415529	5415529	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcatttctaacaaagtcccAgcccgggctgatgctgctgg	11	12	1	1	rs115397988	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5415529	T	T	5415529	1	4	118	0	1	0	0	0	0	0	0	0	17055	203	7	5		5	UCN3	10	5415529	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08		5415529	130119218	553	111755											
ITIH2	3698	broad.mit.edu	37	chr10	7750965	7750965	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttctatcagtacagttaTgctttcttgccaatttcagg	6	8	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7750965	G	G	7750965	1	3	118	0	1	0	0	0	0	0	0	0	7974	1479	51	5		5	ITIH2	10	7750965	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2335436	7750965	127783782	554	111756											
C10orf47	254427	broad.mit.edu	37	chr10	11908754	11908754	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggcgccggggaagccgaGggccttccagaggggaccca	17	14	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11908754	A	A	11908754	2	1	118	1	0	0	0	0	0	0	0	1	1616	991	35	4		4	C10orf47	10	11908754	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	4157789	11908754	123625993	555	111757											
ITGA8	8516	broad.mit.edu	37	chr10	15730143	15730143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaactaataccaatccttGtcaaactcctccaaaaaaat	2	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15730143	T	T	15730143	1	4	118	0	1	0	0	0	0	0	0	0	7952	1392	48	3		3	ITGA8	10	15730143	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3821389	15730143	119804604	556	111758											
CUBN	8029	broad.mit.edu	37	chr10	17171353	17171353	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctacaggccaaatacatcttCactttttgatcatctcaacc	3	13	4	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17171353	A	A	17171353	1	1	118	0	1	0	0	0	0	0	0	0	4084	841	29	3		3	CUBN	10	17171353	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1441210	17171353	118363394	557	111759											
CACNB2	783	broad.mit.edu	37	chr10	18824999	18824999	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttacctggatgtagttatTactctgttaaaaactcatta	5	7	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18824999	G	G	18824999	1	3	118	0	1	0	0	0	0	0	0	0	2579	1769	61	5		5	CACNB2	10	18824999	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1653646	18824999	116709748	558	111760											
MSRB2	22921	broad.mit.edu	37	chr10	23409753	23409753	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggtcagaggttttgcatcAacagtgtggctttgaagttc	12	6	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23409753	C	C	23409753	3	2	118	1	0	0	0	0	1	0	0	0	9982	130	5	5	529	5	MSRB2	10	23409753	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	4584754	23409753	112124994	559	111761											
KIAA1462	57608	broad.mit.edu	37	chr10	30317504	30317504	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctctcacatcaggccactGtccccttgccacacagcggt	8	18	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30317504	A	A	30317504	4	1	118	1	0	0	0	0	0	1	0	0	8304	1386	48	4	2514	4	KIAA1462	10	30317504	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	6907751	30317504	105217243	560	111762											
EPC1	80314	broad.mit.edu	37	chr10	32573907	32573907	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgactggagaatgttgtggtGaggaaagcatttccaaatcc	12	6	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32573907	A	A	32573907	3	1	118	1	0	0	0	0	1	0	0	0	5202	1294	45	4	1071	4	EPC1	10	32573907	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2256403	32573907	102960840	561	111763											
BMS1	9790	broad.mit.edu	37	chr10	43289199	43289199	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcattaagaaaggttcttAggaaatgtgtctaagataat	10	3	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43289199	T	T	43289199	1	4	118	0	1	0	0	0	0	0	0	0	1478	435	15	5		5	BMS1	10	43289199	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	10715292	43289199	92245548	562	111764											
BMS1	9790	broad.mit.edu	37	chr10	43297725	43297725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaactttattttcttcaGtatcttagacaatagtcaaa	3	7	5	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43297725	T	T	43297725	1	4	118	0	1	0	0	0	0	0	0	0	1478	1044	36	3		3	BMS1	10	43297725	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	8526	43297725	92237022	563	111765											
RET	5979	broad.mit.edu	37	chr10	43612222	43612222	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccctgggggagtctccGgggcggggggcgggtgaggc	24	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43612222	A	A	43612222	1	1	118	0	1	0	0	0	0	0	0	0	13343	1131	39	4		4	RET	10	43612222	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	314497	43612222	91922525	564	111766											
AGAP6	414189	broad.mit.edu	37	chr10	51768660	51768660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtttacatctgagaaaGggagtgacccagacaaagag	11	8	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51768660	T	T	51768660	3	4	118	1	0	0	0	0	1	0	0	0	372	1000	35	2	805	2	AGAP6	10	51768660	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	8156438	51768660	83766087	565	111767											
MBL2	4153	broad.mit.edu	37	chr10	54529085	54529085	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actatcaccatctagaaaatTagaacaaagtaaagaagcat	5	7	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54529085	C	C	54529085	1	2	118	0	1	0	0	0	0	0	0	0	9443	1769	61	5		5	MBL2	10	54529085	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2760425	54529085	81005662	566	111768											
ANK3	288	broad.mit.edu	37	chr10	61833765	61833765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacttatgttcaaacagacCtgccagttctttggaaggat	9	9	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61833765	A	A	61833765	3	1	118	1	0	0	0	0	1	0	0	0	622	681	24	2	6600	2	ANK3	10	61833765	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	7304680	61833765	73700982	567	111769											
ARID5B	84159	broad.mit.edu	37	chr10	63845390	63845390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttatattgagaaaagaaaGtaaacccccatagcattgat	7	7	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63845390	T	T	63845390	1	4	118	0	1	0	0	0	0	0	0	0	924	1044	36	3		3	ARID5B	10	63845390	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2011625	63845390	71689357	568	111770											
JMJD1C	221037	broad.mit.edu	37	chr10	64982747	64982747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgagagacgaggatcCactggaatcagccaatacac	11	10	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64982747	A	A	64982747	1	1	118	0	1	0	0	0	0	0	0	0	8020	609	21	2		2	JMJD1C	10	64982747	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1137357	64982747	70552000	569	111771											
CTNNA3	29119	broad.mit.edu	37	chr10	67748709	67748709	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggctattgtttttgtgattGtttgttttgagactgagtct	11	4	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67748709	C	C	67748709	1	2	118	0	1	0	0	0	0	0	0	0	4048	1392	48	4		4	CTNNA3	10	67748709	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2765962	67748709	67786038	570	111772											
LRRTM3	347731	broad.mit.edu	37	chr10	68857483	68857483	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atacgatggaaacacacctaGagactgagctggacctgagc	11	10	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68857483	T	T	68857483	4	4	118	1	0	0	0	0	0	1	0	0	9128	943	33	3	1685	3	LRRTM3	10	68857483	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1108774	68857483	66677264	571	111773											
TTC18	118491	broad.mit.edu	37	chr10	75113581	75113581	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtaacccattttgatttgGgctaaatagcatttttcatt	7	6	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75113581	A	A	75113581	1	1	118	0	1	0	0	0	0	0	0	0	16811	1247	43	4		4	TTC18	10	75113581	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	6256098	75113581	60421166	572	111774											
MAT1A	4143	broad.mit.edu	37	chr10	82036276	82036276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgatgtcttcgttgtgCtgcacagagatgacgatggt	14	7	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82036276	A	A	82036276	3	1	118	1	0	0	0	0	1	0	0	0	9421	796	28	3	579	3	MAT1A	10	82036276	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	6922695	82036276	53498471	573	111775											
WAPAL	23063	broad.mit.edu	37	chr10	88220147	88220147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttgccaaatagtcatcCatacttacactttctaaaac	2	10	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88220147	A	A	88220147	1	1	118	0	1	0	0	0	0	0	0	0	17375	609	21	2		2	WAPAL	10	88220147	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	6183871	88220147	47314600	574	111776											
AGAP11	119385	broad.mit.edu	37	chr10	88769369	88769369	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagctgtccctgggccagCacctgctgcgggccaccgct	13	17	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88769369	G	G	88769369	3	3	118	1	0	0	0	0	1	0	0	0	367	710	25	4	1374	4	AGAP11	10	88769369	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	549222	88769369	46765378	575	111777											
TNKS2	80351	broad.mit.edu	37	chr10	93586770	93586770	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaatatatgctttttgctctCcagcatggtgcctgtgtaaa	8	8	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93586770	T	T	93586770	1	4	118	0	1	0	0	0	0	0	0	0	16444	870	30	4		4	TNKS2	10	93586770	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4817401	93586770	41947977	576	111778											
ENTPD1	953	broad.mit.edu	37	chr10	97477752	97477752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggattgaaatgtatggcCtgaagtgcaggggcatatat	14	5	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97477752	A	A	97477752	1	1	118	0	1	0	0	0	0	0	0	0	5180	696	24	2		2	ENTPD1	10	97477752	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3890982	97477752	38056995	577	111779											
PAX2	5076	broad.mit.edu	37	chr10	102540935	102540935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgccccccagccttggGgctttggcctacgatcacaa	9	16	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102540935	T	T	102540935	1	4	118	0	1	0	0	0	0	0	0	0	11573	1247	43	2		2	PAX2	10	102540935	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	5063183	102540935	32993812	578	111780											
NFKB2	4791	broad.mit.edu	37	chr10	104155597	104155597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccccatctcccgcccaccCccatttagatctgaccccct	4	23	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104155597	A	A	104155597	1	1	118	0	1	0	0	0	0	0	0	0	10471	638	22	2		2	NFKB2	10	104155597	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1614662	104155597	31379150	579	111781											
AS3MT	57412	broad.mit.edu	37	chr10	104638636	104638636	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtttctgcaacatttcGcctcttcaaacactctaaga	4	11	4	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104638636	C	C	104638636	3	2	118	1	0	0	0	0	1	0	0	0	1009	1087	38	4	807	4	AS3MT	10	104638636	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	483039	104638636	30896111	580	111782											
SORCS3	22986	broad.mit.edu	37	chr10	106865417	106865417	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcttcagggacccagtcctCtggggagagcccagacttct	12	13	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106865417	G	G	106865417	1	3	118	0	1	0	0	0	0	0	0	0	15046	928	32	4		4	SORCS3	10	106865417	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2226781	106865417	28669330	581	111783											
DUSP5	1847	broad.mit.edu	37	chr10	112262323	112262323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctattctaaatctgtttGctggttttgctcaattttta	5	6	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112262323	T	T	112262323	1	4	118	0	1	0	0	0	0	0	0	0	4868	1334	46	3		3	DUSP5	10	112262323	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	5396906	112262323	23272424	582	111784											
ACSL5	51703	broad.mit.edu	37	chr10	114169302	114169302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtgacacaccccaaaaGgcattggtgctgatagggaa	11	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114169302	T	T	114169302	3	4	118	1	0	0	0	0	1	0	0	0	180	991	35	2	764	2	ACSL5	10	114169302	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1906979	114169302	21365445	583	111785											
NRAP	4892	broad.mit.edu	37	chr10	115355602	115355602	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgcccaccgcatagaacaGaacccagtcctgcccatgga	9	15	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115355602	A	A	115355602	1	1	118	0	1	0	0	0	0	0	0	0	10733	957	33	4		4	NRAP	10	115355602	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1186300	115355602	20179145	584	111786											
NRAP	4892	broad.mit.edu	37	chr10	115423469	115423469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtggttcaaaacaattTaactgaaaattaaatttcca	4	6	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115423469	A	A	115423469	1	1	118	0	1	0	0	0	0	0	0	0	10733	1769	61	5		5	NRAP	10	115423469	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	67867	115423469	20111278	585	111787											
GFRA1	2674	broad.mit.edu	37	chr10	117884615	117884615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatccattcaaatggactgGgctcccctccctcctctacc	5	18	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117884615	T	T	117884615	1	4	118	0	1	0	0	0	0	0	0	0	6411	1247	43	2		2	GFRA1	10	117884615	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2461146	117884615	17650132	586	111788											
GRK5	2869	broad.mit.edu	37	chr10	121140407	121140407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgaaaccaggcctgggCtggagtgttacattcagttc	12	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121140407	A	A	121140407	3	1	118	1	0	0	0	0	1	0	0	0	6858	796	28	3	239	3	GRK5	10	121140407	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3255792	121140407	14394340	587	111789											
CPXM2	119587	broad.mit.edu	37	chr10	125516684	125516684	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccacctcggcagcctcatCccccagctagtccccctcat	6	21	2	0	rs142645729	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125516684	A	A	125516684	1	1	118	0	1	0	0	0	0	0	0	0	3870	870	30	3		3	CPXM2	10	125516684	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4376277	125516684	10018063	588	111790											
CPXM2	119587	broad.mit.edu	37	chr10	125521438	125521438	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacagtgccctcctccttcTggaagtcctccgtgtggcac	10	15	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521438	A	A	125521438	3	1	118	1	0	0	0	0	1	0	0	0	3870	1580	55	5	559	5	CPXM2	10	125521438	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	4754	125521438	10013309	589	111791											
EBF3	253738	broad.mit.edu	37	chr10	131666256	131666256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcggccaccgcgcgtccCgcggccaccgcgggaggaga	16	18	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131666256	A	A	131666256	1	1	118	0	1	0	0	0	0	0	0	0	4922	667	23	1		1	EBF3	10	131666256	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	6144818	131666256	3868491	590	111792											
LSP1	4046	broad.mit.edu	37	chr11	1904695	1904695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacagtgatgaagtccacCtggaggagttgagtctgagc	15	7	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1904695	A	A	1904695	3	1	118	1	0	0	0	0	1	0	0	0	9150	680	24	2	417	2	LSP1	11	1904695	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08		1904695	133101821	591	111793											
TSPAN32	10077	broad.mit.edu	37	chr11	2337896	2337896	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatacaccctgaccccaCggtagggccccctgcctgcc	9	19	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2337896	A	A	2337896	2	1	118	1	0	0	0	0	0	0	0	1	16772	550	19	3		3	TSPAN32	11	2337896	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	433201	2337896	132668620	592	111794											
OR52B4	143496	broad.mit.edu	37	chr11	4389468	4389468	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggtcctgtaggccagGgatgcccagcaagtggaaga	16	9	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4389468	A	A	4389468	3	1	118	1	0	0	0	0	1	0	0	0	11206	1232	43	4	890	4	OR52B4	11	4389468	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2051572	4389468	130617048	593	111795											
OR51F2	119694	broad.mit.edu	37	chr11	4842710	4842710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcctgatgggcattcCaggcctgaaagccacccagt	9	15	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4842710	A	A	4842710	3	1	118	1	0	0	0	0	1	0	0	0	11191	594	21	2	97	2	OR51F2	11	4842710	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	453242	4842710	130163806	594	111796											
MMP26	56547	broad.mit.edu	37	chr11	5011855	5011855	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattacccacatgatatgaaGccatccgcagtgaaagacag	8	10	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5011855	A	A	5011855	2	1	118	1	0	0	0	0	0	0	0	1	9757	962	34	4		4	MMP26	11	5011855	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	169145	5011855	129994661	595	111797											
HBB	3043	broad.mit.edu	37	chr11	5247763	5247763	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgacatgaacttaaccatAgaaaagaaggggaaagaaaa	9	4	0	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5247763	T	T	5247763	1	4	118	0	1	0	0	0	0	0	0	0	7044	435	15	5		5	HBB	11	5247763	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	235908	5247763	129758753	596	111798											
OR6A2	8590	broad.mit.edu	37	chr11	6816036	6816036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcatagggctctcttgaCctcttgattgcgcaggcagt	11	11	2	2	rs146813493	byFrequency	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6816036	A	A	6816036	3	1	118	1	0	0	0	0	1	0	0	0	11280	507	18	3	83	3	OR6A2	11	6816036	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1568273	6816036	128190480	597	111799											
SYT9	143425	broad.mit.edu	37	chr11	7437131	7437131	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattattctccctgtgactgAcatgaacggaagagatacca	8	9	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7437131	C	C	7437131	1	2	118	0	1	0	0	0	0	0	0	0	15600	290	10	5		5	SYT9	11	7437131	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	621095	7437131	127569385	598	111800											
OVCH2	341277	broad.mit.edu	37	chr11	7716867	7716867	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctgcattatctgtggcatCagagacgaatttcagcctta	9	9	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7716867	A	A	7716867	3	1	118	1	0	0	0	0	1	0	0	0	11418	826	29	3	493	3	OVCH2	11	7716867	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	279736	7716867	127289649	599	111801											
EIF3F	8665	broad.mit.edu	37	chr11	8016095	8016095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccatacactcgcgagagGccataggcattttcagggaa	10	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8016095	T	T	8016095	1	4	118	0	1	0	0	0	0	0	0	0	5058	1218	42	3		3	EIF3F	11	8016095	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	299228	8016095	126990421	600	111802											
LMO1	4004	broad.mit.edu	37	chr11	8251751	8251751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagggtactgggtctagGgccgggggcacagtcacgct	16	11	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8251751	T	T	8251751	1	4	118	0	1	0	0	0	0	0	0	0	8925	1247	43	2		2	LMO1	11	8251751	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	235656	8251751	126754765	601	111803											
LMO1	4004	broad.mit.edu	37	chr11	8251819	8251819	+	Intron	DEL	C	-	-													caggacaagggcttgggaggCcagggtttggcagcccacct							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8251819	-	-	8251819	6	5	118	0	1	1	0	1	0	0	0	0	8925	754	26	0		0	LMO1	11	8251819	Intron	DEL	C	TCGA-44-4112-01A-01D-1458-08	68	8251819	126754697	602	111804											
INSC	387755	broad.mit.edu	37	chr11	15260554	15260554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcgagtccagcagaaaGctgcagtgaccctggctcgt	14	11	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15260554	T	T	15260554	3	4	118	1	0	0	0	0	1	0	0	0	7834	971	34	3	1510	3	INSC	11	15260554	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	7008735	15260554	119745962	603	111805											
ABCC8	6833	broad.mit.edu	37	chr11	17464659	17464659	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtgtgggtgtgtgggagGagacctgctgctgtcgaggg	20	6	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17464659	T	T	17464659	1	4	118	0	1	0	0	0	0	0	0	0	58	1189	41	3		3	ABCC8	11	17464659	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2204105	17464659	117541857	604	111806											
USH1C	10083	broad.mit.edu	37	chr11	17552573	17552573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccatcaggatgcgccagCctcttcttcacccgaaggct	8	17	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17552573	A	A	17552573	1	1	118	0	1	0	0	0	0	0	0	0	17160	754	26	3		3	USH1C	11	17552573	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	87914	17552573	117453943	605	111807											
KCNC1	3746	broad.mit.edu	37	chr11	17794268	17794268	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccggaccccgcactcagtCtggaggtgtggagcctgggg	16	14	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17794268	G	G	17794268	1	3	118	0	1	0	0	0	0	0	0	0	8084	928	32	4		4	KCNC1	11	17794268	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	241695	17794268	117212248	606	111808											
HPS5	11234	broad.mit.edu	37	chr11	18301447	18301447	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactaggcctgctgggaccaGagaaaccgatcgcatttttc	10	12	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18301447	C	C	18301447	2	2	118	1	0	0	0	0	0	0	0	1	7409	929	33	4		4	HPS5	11	18301447	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	507179	18301447	116705069	607	111809											
NELL1	4745	broad.mit.edu	37	chr11	20969045	20969045	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctggtcttctggggcatgaGattttaatgaatagtatgat	12	4	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20969045	T	T	20969045	1	4	118	0	1	0	0	0	0	0	0	0	10428	957	33	3		3	NELL1	11	20969045	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2667598	20969045	114037471	608	111810											
NELL1	4745	broad.mit.edu	37	chr11	21592424	21592424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgtttagaccaaaatGgtcacaagctgtatcgaagt	9	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21592424	T	T	21592424	3	4	118	1	0	0	0	0	1	0	0	0	10428	1348	47	2	2165	2	NELL1	11	21592424	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	623379	21592424	113414092	609	111811											
KCNA4	3739	broad.mit.edu	37	chr11	30033978	30033978	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgctgtcgcctcctcctcCgactaccccggctgctctga	8	20	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30033978	T	T	30033978	3	4	118	1	0	0	0	0	1	0	0	0	8075	652	23	4	1717	4	KCNA4	11	30033978	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	8441554	30033978	104972538	610	111812											
KCNA4	3739	broad.mit.edu	37	chr11	30034116	30034116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagctgctgcagctgccCtggagtgagcaagcctctcc	12	15	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30034116	A	A	30034116	3	1	118	1	0	0	0	0	1	0	0	0	8075	681	24	2	1855	2	KCNA4	11	30034116	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	138	30034116	104972400	611	111813											
MPPED2	744	broad.mit.edu	37	chr11	30433103	30433103	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtcgaggcattgatgtacGttgtgtaaccgtcggtcatg	13	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30433103	A	A	30433103	3	1	118	1	0	0	0	0	1	0	0	0	9836	1145	40	4	163	4	MPPED2	11	30433103	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	398987	30433103	104573413	612	111814											
MPPED2	744	broad.mit.edu	37	chr11	30435814	30435814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatggagcttgggccggaCtcgcctctgaaccgtgttta	12	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30435814	A	A	30435814	3	1	118	1	0	0	0	0	1	0	0	0	9836	565	20	3	237	3	MPPED2	11	30435814	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	2711	30435814	104570702	613	111815											
DCDC1	341019	broad.mit.edu	37	chr11	31327080	31327080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaaccatgcaaaaaagaCaggatgaaaatcatttttta	6	5	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31327080	A	A	31327080	1	1	118	0	1	0	0	0	0	0	0	0	4317	493	17	3		3	DCDC1	11	31327080	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	891266	31327080	103679436	614	111816											
WT1	7490	broad.mit.edu	37	chr11	32439105	32439105	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttactgtggaaaggcaatgGaatagagaaaaccttacccc	10	8	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32439105	A	A	32439105	1	1	118	0	1	0	0	0	0	0	0	0	17535	1189	41	4		4	WT1	11	32439105	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1112025	32439105	102567411	615	111817											
EXT2	2132	broad.mit.edu	37	chr11	44151591	44151591	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaactgttttgctgttgtctCcagagcatctgtggttgtac	10	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44151591	A	A	44151591	1	1	118	0	1	0	0	0	0	0	0	0	5367	870	30	3		3	EXT2	11	44151591	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	11712486	44151591	90854925	616	111818											
OR4C46	119749	broad.mit.edu	37	chr11	51515976	51515976	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatagcttggaggcaaggcAcaaagccctctccacctgtg	10	13	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51515976	T	T	51515976	3	4	118	1	0	0	0	0	1	0	0	0	11145	159	6	5	697	5	OR4C46	11	51515976	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	7364385	51515976	83490540	617	111819											
OR4C16	219428	broad.mit.edu	37	chr11	55339717	55339717	+	Frame_Shift_Del	DEL	G	-	-													ctctacttgggaacactgttGggtaatttgctaatcattat							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55339717	-	-	55339717	7	5	118	1	0	1	0	1	0	0	0	0	11143	1339	47	0	116	0	OR4C16	11	55339717	Frame_Shift_Del	DEL	G	TCGA-44-4112-01A-01D-1458-08	3823741	55339717	79666799	618	111820											
OR5F1	338674	broad.mit.edu	37	chr11	55761670	55761670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcaaaagccccggctgcCatttttaggtagacggtcct	11	12	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55761670	A	A	55761670	3	1	118	1	0	0	0	0	1	0	0	0	11252	594	21	2	515	2	OR5F1	11	55761670	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	421953	55761670	79244846	619	111821											
OR8J1	219477	broad.mit.edu	37	chr11	56128508	56128508	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattcatgtatgtgcagccCcgaagtaaccattcactgga	8	11	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128508	A	A	56128508	2	1	118	1	0	0	0	0	0	0	0	1	11335	610	22	2		2	OR8J1	11	56128508	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	366838	56128508	78878008	620	111822											
OR5R1	219479	broad.mit.edu	37	chr11	56185244	56185244	+	Frame_Shift_Del	DEL	A	-	-													ataacggtgtggaagagggcAaccaggaagctgtatatata							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56185244	-	-	56185244	7	5	118	1	0	1	0	1	0	0	0	0	11274	117	5	0	511	0	OR5R1	11	56185244	Frame_Shift_Del	DEL	A	TCGA-44-4112-01A-01D-1458-08	56736	56185244	78821272	621	111823											
OR5M8	219484	broad.mit.edu	37	chr11	56258462	56258462	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattctgctgccataaagcaGagggttgcagatggccatgt	12	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56258462	T	T	56258462	3	4	118	1	0	0	0	0	1	0	0	0	11270	933	33	3	554	3	OR5M8	11	56258462	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	73218	56258462	78748054	622	111824											
OR5M10	390167	broad.mit.edu	37	chr11	56344907	56344907	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaagacactgtgtgaaGcatccagcgtaggagatggt	14	6	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56344907	T	T	56344907	4	4	118	1	0	0	0	0	0	1	0	0	11267	963	34	3	660	3	OR5M10	11	56344907	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	86445	56344907	78661609	623	111825											
SMTNL1	219537	broad.mit.edu	37	chr11	57310916	57310916	+	Intron	DEL	T	-	-													tggaagcaagccccctctgcTtcagtcagttgggaaagtcc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57310916	-	-	57310916	6	5	118	0	1	1	0	1	0	0	0	0	14929	1624	56	0		0	SMTNL1	11	57310916	Intron	DEL	T	TCGA-44-4112-01A-01D-1458-08	966009	57310916	77695600	624	111826											
OR9Q1	219956	broad.mit.edu	37	chr11	57947485	57947485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttaaagttgacctgtgGggagagctacactcaagaag	12	7	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57947485	T	T	57947485	3	4	118	1	0	0	0	0	1	0	0	0	11349	1232	43	2	571	2	OR9Q1	11	57947485	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	636569	57947485	77059031	625	111827											
OR10W1	81341	broad.mit.edu	37	chr11	58034677	58034677	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggccagcagccgagtggatCttgagcagagcagccactat	13	12	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58034677	G	G	58034677	3	3	118	1	0	0	0	0	1	0	0	0	11015	912	32	4	267	4	OR10W1	11	58034677	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	87192	58034677	76971839	626	111828											
DTX4	23220	broad.mit.edu	37	chr11	58949495	58949495	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcatctaccccatggtcacAgggaccttgcctaaggctca	8	15	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58949495	T	T	58949495	2	4	118	1	0	0	0	0	0	0	0	1	4837	175	7	5		5	DTX4	11	58949495	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	914818	58949495	76057021	627	111829											
PGA3	643834	broad.mit.edu	37	chr11	60978995	60978995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacggaaagtacacttccaCgagctgaagccaagaggcag	12	10	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60978995	A	A	60978995	1	1	118	0	1	0	0	0	0	0	0	0	11866	551	19	3		3	PGA3	11	60978995	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2029500	60978995	74027521	628	111830											
C11orf9	745	broad.mit.edu	37	chr11	61522909	61522909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggatgcactggcttcCagcaggtaaccgggccatgg	16	11	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61522909	A	A	61522909	1	1	118	0	1	0	0	0	0	0	0	0	1683	594	21	2		2	C11orf9	11	61522909	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	543914	61522909	73483607	629	111831											
C11orf48	79081	broad.mit.edu	37	chr11	62432976	62432976	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaaagggctctggccccctCggcgtcatgtcttcggtgct	14	13	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62432976	T	T	62432976	1	4	118	0	1	0	0	0	0	0	0	0	1656	899	31	4		4	C11orf48	11	62432976	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	910067	62432976	72573540	630	111832											
PC	5091	broad.mit.edu	37	chr11	66631078	66631078	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagactctgaaaacagcTggagtctggcgtgcagctgc	13	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66631078	A	A	66631078	1	1	118	0	1	0	0	0	0	0	0	0	11591	1595	55	5		5	PC	11	66631078	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4198102	66631078	68375438	631	111833											
LRP5	4041	broad.mit.edu	37	chr11	68190900	68190900	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccagtgccaggggtctccGccagtgcccaggggtctccg	15	16	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68190900	A	A	68190900	1	1	118	0	1	0	0	0	0	0	0	0	9047	1102	38	4		4	LRP5	11	68190900	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1559822	68190900	66815616	632	111834											
LRTOMT	220074	broad.mit.edu	37	chr11	71821340	71821340	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttcaagaactgacccacttGagcctctctctagggccaat	8	13	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71821340	A	A	71821340	1	1	118	0	1	0	0	0	0	0	0	0	9133	1305	45	4		4	LRTOMT	11	71821340	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	3630440	71821340	63185176	633	111835											
P2RY2	5029	broad.mit.edu	37	chr11	72946375	72946375	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgtgcaggtttatattggGaagctgtagaggaccaggac	14	7	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72946375	C	C	72946375	1	2	118	0	1	0	0	0	0	0	0	0	11446	1189	41	4		4	P2RY2	11	72946375	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	1125035	72946375	62060141	634	111836											
LRRC32	2615	broad.mit.edu	37	chr11	76371973	76371973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcagctcaggtctagcaCccgcagctgctggaggctga	14	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76371973	A	A	76371973	3	1	118	1	0	0	0	0	1	0	0	0	9074	507	18	3	1328	3	LRRC32	11	76371973	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3425598	76371973	58634543	635	111837											
PCF11	51585	broad.mit.edu	37	chr11	82879556	82879556	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attcagataaaccatttgtaGatagtccagcatcaagattc	6	8	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82879556	C	C	82879556	3	2	118	1	0	0	0	0	1	0	0	0	11667	942	33	4	2209	4	PCF11	11	82879556	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	6507583	82879556	52126960	636	111838											
DLG2	1740	broad.mit.edu	37	chr11	84245609	84245609	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcggaagagcaatataacTgaccttcagaggagaaatat	10	6	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84245609	A	A	84245609	1	1	118	0	1	0	0	0	0	0	0	0	4595	1595	55	5		5	DLG2	11	84245609	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1366053	84245609	50760907	637	111839											
DLG2	1740	broad.mit.edu	37	chr11	84245926	84245926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcagactcttctggcgGtcaccatagaccaggtcaaa	10	12	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84245926	T	T	84245926	1	4	118	0	1	0	0	0	0	0	0	0	4595	1276	44	3		3	DLG2	11	84245926	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	317	84245926	50760590	638	111840											
ME3	10873	broad.mit.edu	37	chr11	86267846	86267846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctgttcctgctcagcCcggaacattcatgggcaagc	11	14	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86267846	A	A	86267846	1	1	118	0	1	0	0	0	0	0	0	0	9512	638	22	2		2	ME3	11	86267846	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2021920	86267846	48738670	639	111841											
MMP1	4312	broad.mit.edu	37	chr11	102668252	102668252	+	Intron	SNP	A	G	G													ctgacaaaagaaaattatcgAaacactgcatgggaaatctt							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102668252	G	G	102668252	1	3	118	0	1	0	0	0	0	0	0	0	9741	261	9	5		5	MMP1	11	102668252	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	16400406	102668252	32338264	640	111842	485	2									
MMP1	4312	broad.mit.edu	37	chr11	102668256	102668256	+	Intron	SNP	A	T	T													caaaagaaaattatcgaaacActgcatgggaaatctttctc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102668256	T	T	102668256	1	4	118	0	1	0	0	0	0	0	0	0	9741	174	6	5		5	MMP1	11	102668256	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	4	102668256	32338260	641	111843	485	2									
MMP3	4314	broad.mit.edu	37	chr11	102713485	102713485	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaggaactccacacctggGcttgcgcatcacctccagag	9	15	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102713485	A	A	102713485	3	1	118	1	0	0	0	0	1	0	0	0	9760	1203	42	4	1201	4	MMP3	11	102713485	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	45229	102713485	32293031	642	111844											
DLAT	1737	broad.mit.edu	37	chr11	111896296	111896296	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtacccggaactccacgaGtgacctcgcgatctggcccg	12	15	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111896296	A	A	111896296	3	1	118	1	0	0	0	0	1	0	0	0	4589	1029	36	4	102	4	DLAT	11	111896296	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	9182811	111896296	23110220	643	111845											
USP28	57646	broad.mit.edu	37	chr11	113699991	113699991	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaccatggccccttccaaAcactcgtctaagttgcgata	6	15	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113699991	T	T	113699991	4	4	118	1	0	0	0	0	0	1	0	0	17185	41	2	5	2310	5	USP28	11	113699991	Nonsense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	1803695	113699991	21306525	644	111846											
SIDT2	51092	broad.mit.edu	37	chr11	117058369	117058369	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttctggatctaccgatggTctggttgacagcgctggcac	13	10	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117058369	A	A	117058369	2	1	118	1	0	0	0	0	0	0	0	1	14416	1654	58	5		5	SIDT2	11	117058369	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	3358378	117058369	17948147	645	111847											
OR6X1	390260	broad.mit.edu	37	chr11	123624331	123624331	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagtcattgcctttcttAaggctcccttcacctccttg	7	14	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123624331	G	G	123624331	3	3	118	1	0	0	0	0	1	0	0	0	11306	372	13	5	44	5	OR6X1	11	123624331	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	6565962	123624331	11382185	646	111848											
OR8B4	283162	broad.mit.edu	37	chr11	124294273	124294273	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgttggaatcacagaaggtCagtcgcagcatgcttccagt	11	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124294273	A	A	124294273	2	1	118	1	0	0	0	0	0	0	0	1	11323	813	29	3		3	OR8B4	11	124294273	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	669942	124294273	10712243	647	111849											
CCDC15	80071	broad.mit.edu	37	chr11	124829042	124829042	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaattgaagaagaactaaAggaacagctaagaaaaaaac	7	4	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124829042	T	T	124829042	3	4	118	1	0	0	0	0	1	0	0	0	2810	72	3	5	215	5	CCDC15	11	124829042	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	534769	124829042	10177474	648	111850											
ARHGAP32	9743	broad.mit.edu	37	chr11	128842434	128842434	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcagatctctgggaaggcgGagggggaaggggacgattag	20	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128842434	A	A	128842434	3	1	118	1	0	0	0	0	1	0	0	0	883	1174	41	4	2346	4	ARHGAP32	11	128842434	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	4013392	128842434	6164082	649	111851											
CACNA2D4	93589	broad.mit.edu	37	chr12	1950021	1950021	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacccagtcatggggaagaGctgtggttggggcaggtgga	18	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1950021	A	A	1950021	1	1	118	0	1	0	0	0	0	0	0	0	2577	986	34	4		4	CACNA2D4	12	1950021	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08		1950021	131901874	650	111852											
DYRK4	8798	broad.mit.edu	37	chr12	4700242	4700242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagagcctggctgaaggtGggtgtctttggttaaataaa	13	4	1	2	rs73257448	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4700242	T	T	4700242	1	4	118	0	1	0	0	0	0	0	0	0	4898	1363	47	2		2	DYRK4	12	4700242	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2750221	4700242	129151653	651	111853											
KCNA1	3736	broad.mit.edu	37	chr12	5021590	5021590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtgtactttgccgaggCggaagaagctgagtcgcact	14	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5021590	A	A	5021590	3	1	118	1	0	0	0	0	1	0	0	0	8071	768	27	3	1048	3	KCNA1	12	5021590	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	321348	5021590	128830305	652	111854											
NOP2	4839	broad.mit.edu	37	chr12	6671110	6671110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaccacttgcccaggggatCcaggttaaccccacgattga	10	13	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6671110	A	A	6671110	3	1	118	1	0	0	0	0	1	0	0	0	10633	855	30	3	1460	3	NOP2	12	6671110	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1649520	6671110	127180785	653	111855											
CHD4	1108	broad.mit.edu	37	chr12	6709107	6709107	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcttcgaggtctccCccaacctcttccaggatctc	5	19	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6709107	A	A	6709107	2	1	118	1	0	0	0	0	0	0	0	1	3358	610	22	2		2	CHD4	12	6709107	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	37997	6709107	127142788	654	111856											
CLSTN3	9746	broad.mit.edu	37	chr12	7303678	7303678	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtacgtaagcctggtgggGctgggcagggaggggcaggt	21	7	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7303678	C	C	7303678	1	2	118	0	1	0	0	0	0	0	0	0	3595	1218	42	4		4	CLSTN3	12	7303678	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	594571	7303678	126548217	655	111857											
CD163	9332	broad.mit.edu	37	chr12	7639048	7639048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctcactacccttcctcaGtcctttctctatgtaattat	2	16	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7639048	T	T	7639048	1	4	118	0	1	0	0	0	0	0	0	0	2997	1044	36	3		3	CD163	12	7639048	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	335370	7639048	126212847	656	111858											
CD163	9332	broad.mit.edu	37	chr12	7647772	7647772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagtttcatttccgttaCagctacttagaaacagccat	7	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7647772	A	A	7647772	3	1	118	1	0	0	0	0	1	0	0	0	2997	478	17	3	2189	3	CD163	12	7647772	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	8724	7647772	126204123	657	111859											
PZP	5858	broad.mit.edu	37	chr12	9333633	9333633	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagcacactttggtccacAgcacgaagggcacagaggga	13	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9333633	T	T	9333633	2	4	118	1	0	0	0	0	0	0	0	1	12977	175	7	5		5	PZP	12	9333633	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	1685861	9333633	124518262	658	111860											
PIK3C2G	5288	broad.mit.edu	37	chr12	18491482	18491482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttcagagaaaaggagaGgtaagtacattcatttatta	8	4	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18491482	T	T	18491482	3	4	118	1	0	0	0	0	1	0	0	0	12006	1014	35	2	1425	2	PIK3C2G	12	18491482	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	9157849	18491482	115360413	659	111861											
PIK3C2G	5288	broad.mit.edu	37	chr12	18544314	18544314	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggtttcatttcctgatgtCatgcttcttggatggttaat	9	7	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18544314	T	T	18544314	1	4	118	0	1	0	0	0	0	0	0	0	12006	841	29	4		4	PIK3C2G	12	18544314	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	52832	18544314	115307581	660	111862											
SLCO1B3	28234	broad.mit.edu	37	chr12	21205248	21205248	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaatcaaaatctcagatttGattttttaataattgtttat	3	3	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21205248	A	A	21205248	1	1	118	0	1	0	0	0	0	0	0	0	14838	1305	45	4		4	SLCO1B3	12	21205248	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2660934	21205248	112646647	661	111863											
CMAS	55907	broad.mit.edu	37	chr12	22208545	22208545	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaaattcagaaaggagGtaatctcttttcagtcttta	9	5	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22208545	T	T	22208545	5	4	118	1	0	0	0	0	0	0	1	0	3607	1275	44	3	570	3	CMAS	12	22208545	Splice_Site	SNP	G	TCGA-44-4112-01A-01D-1458-08	1003297	22208545	111643350	662	111864											
OVCH1	341350	broad.mit.edu	37	chr12	29597135	29597135	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatcccttctggcttggtcAgaagaacatcctcacaaggg	10	11	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29597135	T	T	29597135	3	4	118	1	0	0	0	0	1	0	0	0	11417	188	7	5	464	5	OVCH1	12	29597135	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	7388590	29597135	104254760	663	111865											
TMTC1	83857	broad.mit.edu	37	chr12	29757258	29757258	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacacaatagtgaaggaaaCattaacttctgttgaattcc	6	8	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29757258	T	T	29757258	1	4	118	0	1	0	0	0	0	0	0	0	16383	493	17	4		4	TMTC1	12	29757258	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	160123	29757258	104094637	664	111866											
CAPRIN2	65981	broad.mit.edu	37	chr12	30882156	30882156	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcagtaagcatatcccaaCgttttgggagatttggtttt	10	6	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30882156	T	T	30882156	3	4	118	1	0	0	0	0	1	0	0	0	2662	536	19	4	2219	4	CAPRIN2	12	30882156	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1124898	30882156	102969739	665	111867											
ALG10	84920	broad.mit.edu	37	chr12	34175368	34175368	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actccgggaaacagcgacccGatctttccggatccgcgctc	10	16	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34175368	A	A	34175368	1	1	118	0	1	0	0	0	0	0	0	0	511	1073	37	4		4	ALG10	12	34175368	5'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	3293212	34175368	99676527	666	111868											
KIF21A	55605	broad.mit.edu	37	chr12	39761735	39761735	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgcccacagtataaattcCtccagttgaatcttcatgaa	5	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39761735	A	A	39761735	4	1	118	1	0	0	0	0	0	1	0	0	8358	690	24	2	4614	2	KIF21A	12	39761735	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	5586367	39761735	94090160	667	111869											
C12orf40	283461	broad.mit.edu	37	chr12	40114571	40114571	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcatggtttagagcaaaaTtattaatttctttttagcca	6	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40114571	A	A	40114571	1	1	118	0	1	0	0	0	0	0	0	0	1699	1508	52	5		5	C12orf40	12	40114571	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	352836	40114571	93737324	668	111870											
LRRK2	120892	broad.mit.edu	37	chr12	40761586	40761586	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagagaaataggaattgtCtttggataggaaaattattc	10	2	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40761586	T	T	40761586	1	4	118	0	1	0	0	0	0	0	0	0	9120	928	32	4		4	LRRK2	12	40761586	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	647015	40761586	93090309	669	111871											
PRICKLE1	144165	broad.mit.edu	37	chr12	42862738	42862738	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaggaatgtatttattTttgctacctcttttagtgat	7	5	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42862738	G	G	42862738	1	3	118	0	1	0	0	0	0	0	0	0	12592	1856	64	5		5	PRICKLE1	12	42862738	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2101152	42862738	90989157	670	111872											
TMEM117	84216	broad.mit.edu	37	chr12	44770556	44770556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatcttcgtacattagttaGggtaatgctagttgctgtaa	9	5	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44770556	T	T	44770556	1	4	118	0	1	0	0	0	0	0	0	0	16154	1015	35	2		2	TMEM117	12	44770556	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1907818	44770556	89081339	671	111873											
NELL2	4753	broad.mit.edu	37	chr12	45170910	45170910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgcaagttggacaggctGgaattacaaacactacattt	8	8	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45170910	T	T	45170910	1	4	118	0	1	0	0	0	0	0	0	0	10429	1363	47	2		2	NELL2	12	45170910	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	400354	45170910	88680985	672	111874											
VDR	7421	broad.mit.edu	37	chr12	48238559	48238559	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgccaaacacttcgagCacaaggggcgttagcttcat	9	11	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48238559	A	A	48238559	2	1	118	1	0	0	0	0	0	0	0	1	17276	697	25	3		3	VDR	12	48238559	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	3067649	48238559	85613336	673	111875											
WNT1	7471	broad.mit.edu	37	chr12	49373354	49373354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgagccgcaaacagcggCgtctgatacgccaaaatccg	11	12	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49373354	A	A	49373354	3	1	118	1	0	0	0	0	1	0	0	0	17508	768	27	3	214	3	WNT1	12	49373354	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1134795	49373354	84478541	674	111876											
GALNT6	11226	broad.mit.edu	37	chr12	51759511	51759511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccattccacagaagcCggagctggggaaggaggtta	15	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51759511	A	A	51759511	1	1	118	0	1	0	0	0	0	0	0	0	6279	667	23	1		1	GALNT6	12	51759511	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2386157	51759511	82092384	675	111877											
KRT75	9119	broad.mit.edu	37	chr12	52827967	52827967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcccccactccctgctGcagagcgggccacagagaca	11	18	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52827967	T	T	52827967	3	4	118	1	0	0	0	0	1	0	0	0	8559	1319	46	3	1569	3	KRT75	12	52827967	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1068456	52827967	81023928	676	111878											
KRT6A	3853	broad.mit.edu	37	chr12	52881965	52881966	+	Intron	DNP	GT	AA	AA													agcgtgggcagcctcggtggGtggaagagtccatgggaaac							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52881966	AA	AA	52881965	1	1	118	0	1	0	0	0	0	0	0	0	8551	1276	44	4		4	KRT6A	12	52881965	Intron	DNP	GT	TCGA-44-4112-01A-01D-1458-08	53998	52881965	80969930	677	111879											
KRT6A	3853	broad.mit.edu	37	chr12	52884748	52884748	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catccacatcctggggaaagAgccaacaacctggagttacc	9	13	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52884748	G	G	52884748	1	3	118	0	1	0	0	0	0	0	0	0	8551	319	11	5		5	KRT6A	12	52884748	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	2783	52884748	80967147	678	111880											
KRT3	3850	broad.mit.edu	37	chr12	53189613	53189613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcccgggagccgccagCtgccacgctgatggagatgc	14	15	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53189613	A	A	53189613	3	1	118	1	0	0	0	0	1	0	0	0	8537	797	28	3	1708	3	KRT3	12	53189613	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	304865	53189613	80662282	679	111881											
OR6C74	254783	broad.mit.edu	37	chr12	55641435	55641435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtcctatgagcgctatGtggccatctgcaaacccctg	9	14	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55641435	T	T	55641435	3	4	118	1	0	0	0	0	1	0	0	0	11292	1377	48	3	366	3	OR6C74	12	55641435	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2451822	55641435	78210460	680	111882											
DNAJC14	85406	broad.mit.edu	37	chr12	56151456	56151456	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgagaaggaaggatggccCagacttgagcttggtagcta	14	9	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56151456	T	T	56151456	1	4	118	0	1	0	0	0	0	0	0	0	4673	609	21	4		4	DNAJC14	12	56151456	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	510021	56151456	77700439	681	111883											
LRP1	4035	broad.mit.edu	37	chr12	57603412	57603412	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccacaggtgccagtgtcgTggacagcatggccagggcct	14	12	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57603412	C	C	57603412	1	2	118	0	1	0	0	0	0	0	0	0	9038	1711	59	5		5	LRP1	12	57603412	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1451956	57603412	76248483	682	111884											
MON2	23041	broad.mit.edu	37	chr12	62929426	62929426	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaatatgcaaaggttccCtgcctccccattatgctctt	6	14	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62929426	T	T	62929426	2	4	118	1	0	0	0	0	0	0	0	1	9794	680	24	4		4	MON2	12	62929426	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	5326014	62929426	70922469	683	111885											
IRAK3	11213	broad.mit.edu	37	chr12	66620547	66620547	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttggctgcatattttacagAgactgagaagttctgtctga	11	6	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66620547	T	T	66620547	3	4	118	1	0	0	0	0	1	0	0	0	7894	304	11	5	724	5	IRAK3	12	66620547	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	3691121	66620547	67231348	684	111886											
IL22	50616	broad.mit.edu	37	chr12	68645484	68645484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaattttgcccacaatgacCtagatttcaacagtgaccta	6	10	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68645484	T	T	68645484	1	4	118	0	1	0	0	0	0	0	0	0	7742	696	24	4		4	IL22	12	68645484	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2024937	68645484	65206411	685	111887											
PTPRR	5801	broad.mit.edu	37	chr12	71054802	71054802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagctgtaggaggggctGggcactgtctggagtcttgt	17	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71054802	T	T	71054802	3	4	118	1	0	0	0	0	1	0	0	0	12918	1357	47	2	301	2	PTPRR	12	71054802	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2409318	71054802	62797093	686	111888											
BBS10	79738	broad.mit.edu	37	chr12	76740022	76740022	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctgggaagtacccatattCggtaacttacagctcactgg	9	11	2	0	rs150530553		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76740022	G	G	76740022	2	3	118	1	0	0	0	0	0	0	0	1	1341	871	31	4		4	BBS10	12	76740022	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	5685220	76740022	57111873	687	111889											
NAV3	89795	broad.mit.edu	37	chr12	78392030	78392030	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagattttagaacatcatatGttgtaaatttctgactttca	5	5	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78392030	C	C	78392030	1	2	118	0	1	0	0	0	0	0	0	0	10279	1392	48	4		4	NAV3	12	78392030	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1652008	78392030	55459865	688	111890											
SYT1	6857	broad.mit.edu	37	chr12	79679716	79679716	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaatgccattaacatgaaaGatgtaaaagacttagggaag	10	4	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79679716	T	T	79679716	3	4	118	1	0	0	0	0	1	0	0	0	15584	942	33	3	322	3	SYT1	12	79679716	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1287686	79679716	54172179	689	111891											
C12orf26	84190	broad.mit.edu	37	chr12	82871186	82871187	+	Intron	DNP	TA	CG	CG													tcttattaaatacagtaataTagagccacttatatctagga							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	CG	82871187	CG	CG	82871186	1	2	118	0	1	0	0	0	0	0	0	0	1692	1421	49	5		5	C12orf26	12	82871186	Intron	DNP	TA	TCGA-44-4112-01A-01D-1458-08	3191470	82871186	50980709	690	111892											
TMTC3	160418	broad.mit.edu	37	chr12	88589425	88589425	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtattttaaatggtgaatAacattaatatttatcgtgac	6	4	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88589425	T	T	88589425	4	4	118	1	0	0	0	0	0	0	0	0	16385	369	13	5	2794	5	TMTC3	12	88589425	Nonstop_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	5718239	88589425	45262470	691	111893											
PLXNC1	10154	broad.mit.edu	37	chr12	94613897	94613897	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaataaaagtcagcccaacCggacctgcacctgtagcatc	8	13	1	1	rs146510015		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94613897	A	A	94613897	2	1	118	1	0	0	0	0	0	0	0	1	12221	643	23	1		1	PLXNC1	12	94613897	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	6024472	94613897	39237998	692	111894											
STAB2	55576	broad.mit.edu	37	chr12	104044204	104044204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgacccaagacctgttgcCtgattttactcctcctgtac	7	14	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104044204	A	A	104044204	1	1	118	0	1	0	0	0	0	0	0	0	15356	696	24	2		2	STAB2	12	104044204	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	9430307	104044204	29807691	693	111895											
UBE3B	89910	broad.mit.edu	37	chr12	109936051	109936051	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcagcgcctcactgtttTagaatcccatgacatgcttc	7	12	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109936051	C	C	109936051	3	2	118	1	0	0	0	0	1	0	0	0	17006	1764	61	5	867	5	UBE3B	12	109936051	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	5891847	109936051	23915844	694	111896											
GIT2	9815	broad.mit.edu	37	chr12	110418599	110418599	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatatcttttacatgtaacTgacaattctgtagttatcct	4	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110418599	C	C	110418599	1	2	118	0	1	0	0	0	0	0	0	0	6461	1595	55	5		5	GIT2	12	110418599	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	482548	110418599	23433296	695	111897											
C12orf51	283450	broad.mit.edu	37	chr12	112646247	112646247	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcttgtcctagtcactagGgagctaagcaaatgctgctg	12	9	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112646247	A	A	112646247	1	1	118	0	1	0	0	0	0	0	0	0	1709	1247	43	4		4	C12orf51	12	112646247	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2227648	112646247	21205648	696	111898											
RASAL1	8437	broad.mit.edu	37	chr12	113553693	113553693	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagggggaggccaggatccaGacccccggcacccgcctgat	14	16	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113553693	T	T	113553693	1	4	118	0	1	0	0	0	0	0	0	0	13171	957	33	3		3	RASAL1	12	113553693	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	907446	113553693	20298202	697	111899											
TPCN1	53373	broad.mit.edu	37	chr12	113711406	113711406	+	Frame_Shift_Del	DEL	G	-	-													gatgatgccctcctactcccGgaacccctggtcctgcgtct							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113711406	-	-	113711406	7	5	118	1	0	1	0	1	0	0	0	0	16519	1116	39	0	1129	0	TPCN1	12	113711406	Frame_Shift_Del	DEL	G	TCGA-44-4112-01A-01D-1458-08	157713	113711406	20140489	698	111900											
NOS1	4842	broad.mit.edu	37	chr12	117715825	117715825	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatctggaagagctcagggtCattgccgttggcctgaagca	13	9	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117715825	T	T	117715825	3	4	118	1	0	0	0	0	1	0	0	0	10636	826	29	4	2785	4	NOS1	12	117715825	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	4004419	117715825	16136070	699	111901											
NOS1	4842	broad.mit.edu	37	chr12	117723830	117723830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccttggtagaagcttatcCtttttaaagctccatccact	5	12	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117723830	A	A	117723830	1	1	118	0	1	0	0	0	0	0	0	0	10636	696	24	2		2	NOS1	12	117723830	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	8005	117723830	16128065	700	111902											
VPS33A	65082	broad.mit.edu	37	chr12	122720196	122720196	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgatggatacaatacatgCatacattactttttcaaaaa	4	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122720196	T	T	122720196	1	4	118	0	1	0	0	0	0	0	0	0	17328	725	25	4		4	VPS33A	12	122720196	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4996366	122720196	11131699	701	111903											
RSRC2	65117	broad.mit.edu	37	chr12	122990163	122990164	+	Nonsense_Mutation	DNP	GA	AG	AG													tgatcttgccatttcatactGagcatctaaatttcgaaata							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	122990164	AG	AG	122990163	4	1	118	1	0	0	0	0	0	1	0	0	13826	1299	45	4	92	4	RSRC2	12	122990163	Nonsense_Mutation	DNP	GA	TCGA-44-4112-01A-01D-1458-08	269967	122990163	10861732	702	111904											
KNTC1	9735	broad.mit.edu	37	chr12	123041966	123041966	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtcaaatcatatattggaGaaactggcattgagttctgt	9	5	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123041966	T	T	123041966	3	4	118	1	0	0	0	0	1	0	0	0	8499	933	33	3	1370	3	KNTC1	12	123041966	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	51803	123041966	10809929	703	111905											
PIWIL1	9271	broad.mit.edu	37	chr12	130834576	130834576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtagaattctctaacaCttgttgcacatttggaacaa	7	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130834576	A	A	130834576	1	1	118	0	1	0	0	0	0	0	0	0	12052	580	20	3		3	PIWIL1	12	130834576	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	7792610	130834576	3017319	704	111906											
MMP17	4326	broad.mit.edu	37	chr12	132335487	132335487	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgcctcctacttcttcCgtggccaggagtactggaaa	11	12	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132335487	T	T	132335487	3	4	118	1	0	0	0	0	1	0	0	0	9749	652	23	4	1518	4	MMP17	12	132335487	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1500911	132335487	1516408	705	111907											
WASF3	10810	broad.mit.edu	37	chr13	27216299	27216299	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catagaaattttaggataatGaaaattcctggaaaatagtc	7	4	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27216299	A	A	27216299	1	1	118	0	1	0	0	0	0	0	0	0	17381	1305	45	4		4	WASF3	13	27216299	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08		27216299	87953579	706	111908											
FLT1	2321	broad.mit.edu	37	chr13	29001854	29001854	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttcactaatttgttgcctaCcagaaccagaagaaagtatg	8	8	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29001854	G	G	29001854	1	3	118	0	1	0	0	0	0	0	0	0	5999	522	18	4		4	FLT1	13	29001854	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1785555	29001854	86168024	707	111909											
FLT1	2321	broad.mit.edu	37	chr13	29007853	29007853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttattgactaacactgccaCaggagtcaggattttctgat	8	8	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29007853	A	A	29007853	1	1	118	0	1	0	0	0	0	0	0	0	5999	493	17	3		3	FLT1	13	29007853	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	5999	29007853	86162025	708	111910											
MTUS2	23281	broad.mit.edu	37	chr13	30066847	30066847	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattttgaaaaactgcggctGtcattgcaggttagtatttc	9	6	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30066847	C	C	30066847	2	2	118	1	0	0	0	0	0	0	0	1	10060	1364	48	4		4	MTUS2	13	30066847	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	1058994	30066847	85103031	709	111911											
HMGB1	3146	broad.mit.edu	37	chr13	31128546	31128546	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatattaacattaaacaagTgttattgaacatgagaaaat	5	3	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31128546	A	A	31128546	1	1	118	0	1	0	0	0	0	0	0	0	7292	1711	59	5		5	HMGB1	13	31128546	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1061699	31128546	84041332	710	111912											
ITM2B	9445	broad.mit.edu	37	chr13	48835306	48835306	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtgaagccagcaattgtttCgcaattcggcattttgaaaa	9	8	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48835306	T	T	48835306	2	4	118	1	0	0	0	0	0	0	0	1	7983	883	31	4		4	ITM2B	13	48835306	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	17706760	48835306	66334572	711	111913											
RBM26	64062	broad.mit.edu	37	chr13	79896614	79896614	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcctaaaatgattaaaaaTattggaatataagacattaa	5	4	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79896614	A	A	79896614	1	1	118	0	1	0	0	0	0	0	0	0	13234	1421	49	5		5	RBM26	13	79896614	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	31061308	79896614	35273264	712	111914											
PCCA	5095	broad.mit.edu	37	chr13	100809550	100809550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttctaaggtacatccaGgttatggattcctttcagaa	7	8	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100809550	T	T	100809550	3	4	118	1	0	0	0	0	1	0	0	0	11598	1000	35	2	446	2	PCCA	13	100809550	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	20912936	100809550	14360328	713	111915											
NALCN	259232	broad.mit.edu	37	chr13	101997748	101997748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtgtgtgtctggaataGctaaactattccaggttaca	10	7	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101997748	T	T	101997748	3	4	118	1	0	0	0	0	1	0	0	0	10242	971	34	3	4700	3	NALCN	13	101997748	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1188198	101997748	13172130	714	111916											
ITGBL1	9358	broad.mit.edu	37	chr13	102367988	102367988	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcatgtgaaatctggcttgGctcagaatatccttaacaat	8	8	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102367988	C	C	102367988	3	2	118	1	0	0	0	0	1	0	0	0	7972	1203	42	4	1511	4	ITGBL1	13	102367988	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	370240	102367988	12801890	715	111917											
COL4A2	1284	broad.mit.edu	37	chr13	111130348	111130348	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgtctctgattcctgcAggaagccaagggatgcctgg	12	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111130348	G	G	111130348	5	3	118	1	0	0	0	0	0	0	1	0	3722	202	7	5	2538	5	COL4A2	13	111130348	Splice_Site	SNP	A	TCGA-44-4112-01A-01D-1458-08	8762360	111130348	4039530	716	111918											
RASA3	22821	broad.mit.edu	37	chr13	114762162	114762162	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccagtccttggcctccacGcagttgttggcctggatgta	11	12	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114762162	C	C	114762162	3	2	118	1	0	0	0	0	1	0	0	0	13170	1079	38	4	534	4	RASA3	13	114762162	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3631814	114762162	407716	717	111919											
OR4K2	390431	broad.mit.edu	37	chr14	20344411	20344411	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcgtgatacaggcttctgCctatgaatcaagacaatgga	9	8	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20344411	A	A	20344411	1	1	118	0	1	0	0	0	0	0	0	0	11166	754	26	3		3	OR4K2	14	20344411	5'Flank	SNP	C	TCGA-44-4112-01A-01D-1458-08		20344411	87005129	718	111920											
OR11H6	122748	broad.mit.edu	37	chr14	20692109	20692109	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacacccatgtacatccttCtgggaaactttgcctttcta	5	13	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20692109	A	A	20692109	3	1	118	1	0	0	0	0	1	0	0	0	11023	912	32	3	243	3	OR11H6	14	20692109	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	347698	20692109	86657431	719	111921											
CHD8	57680	broad.mit.edu	37	chr14	21863424	21863424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccccaacccaccaccccaCacagaattatactagttgac	3	17	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21863424	A	A	21863424	1	1	118	0	1	0	0	0	0	0	0	0	3362	493	17	3		3	CHD8	14	21863424	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1171315	21863424	85486116	720	111922											
C14orf93	60686	broad.mit.edu	37	chr14	23468201	23468201	+	Missense_Mutation	SNP	G	A	A													tggcctcgctgccactgggaGgggagaagagaatggtggca							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23468201	A	A	23468201	3	1	118	1	0	0	0	0	1	0	0	0	1795	1000	35	4	1608	4	C14orf93	14	23468201	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1604777	23468201	83881339	721	111923	486	2									
C14orf93	60686	broad.mit.edu	37	chr14	23468206	23468206	+	Silent	SNP	G	A	A													tcgctgccactgggaggggaGaagagaatggtggcactgaa							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23468206	A	A	23468206	2	1	118	1	0	0	0	0	0	0	0	1	1795	933	33	4		4	C14orf93	14	23468206	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	5	23468206	83881334	722	111924	486	2									
PNN	5411	broad.mit.edu	37	chr14	39645226	39645226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatctctgaaagtatttgGgtgcgactgtgtgtgtctac	11	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39645226	T	T	39645226	1	4	118	0	1	0	0	0	0	0	0	0	12255	1247	43	2		2	PNN	14	39645226	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	16177020	39645226	67704314	723	111925											
LRFN5	145581	broad.mit.edu	37	chr14	42356354	42356354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggttagcttgcataccCttagtttggatcacaatatg	9	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356354	A	A	42356354	3	1	118	1	0	0	0	0	1	0	0	0	9028	681	24	2	528	2	LRFN5	14	42356354	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	2711128	42356354	64993186	724	111926											
FSCB	84075	broad.mit.edu	37	chr14	44974151	44974151	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggtagagactgaacttcAgcaggggcctcctcagctgg	14	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44974151	T	T	44974151	2	4	118	1	0	0	0	0	0	0	0	1	6126	175	7	5		5	FSCB	14	44974151	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	2617797	44974151	62375389	725	111927											
FSCB	84075	broad.mit.edu	37	chr14	44976031	44976031	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtccaagtttgctgaagctCagaagatactctaatagact	8	8	2	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44976031	A	A	44976031	4	1	118	1	0	0	0	0	0	1	0	0	6126	835	29	3	2321	3	FSCB	14	44976031	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1880	44976031	62373509	726	111928											
C14orf106	55320	broad.mit.edu	37	chr14	45711253	45711253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacctgattttttttaagtCcatttgtaacagtttgaaat	5	7	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45711253	A	A	45711253	3	1	118	1	0	0	0	0	1	0	0	0	1751	855	30	3	2327	3	C14orf106	14	45711253	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	735222	45711253	61638287	727	111929											
CDKL1	8814	broad.mit.edu	37	chr14	50801307	50801307	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagccccagggcaggataAgagatgtttgggaattttaa	14	5	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50801307	G	G	50801307	2	3	118	1	0	0	0	0	0	0	0	1	3183	59	3	5		5	CDKL1	14	50801307	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	5090054	50801307	56548233	728	111930											
RTN1	6252	broad.mit.edu	37	chr14	60072161	60072161	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgttcacgtagaactgCaggcagtccgtgtacttctg	12	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60072161	A	A	60072161	2	1	118	1	0	0	0	0	0	0	0	1	13836	697	25	3		3	RTN1	14	60072161	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	9270854	60072161	47277379	729	111931											
PPP2R5E	5529	broad.mit.edu	37	chr14	64006248	64006248	+	Frame_Shift_Del	DEL	T	-	-													acctggtcatgagccttaccTtttagcagcggcagaggtgt							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64006248	-	-	64006248	7	5	118	1	0	1	0	1	0	0	0	0	12497	1623	56	0	1299	0	PPP2R5E	14	64006248	Frame_Shift_Del	DEL	T	TCGA-44-4112-01A-01D-1458-08	3934087	64006248	43343292	730	111932											
GPHN	10243	broad.mit.edu	37	chr14	67579829	67579829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctggcaactgtaggtGtcacagaggttgaagttaat	12	6	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67579829	T	T	67579829	3	4	118	1	0	0	0	0	1	0	0	0	6675	1377	48	3	1629	3	GPHN	14	67579829	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	3573581	67579829	39769711	731	111933											
SMOC1	64093	broad.mit.edu	37	chr14	70444584	70444584	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaactcttagaaagaaaccAaccacaatgcattctgagtg	6	11	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70444584	T	T	70444584	1	4	118	0	1	0	0	0	0	0	0	0	14915	145	5	5		5	SMOC1	14	70444584	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	2864755	70444584	36904956	732	111934											
SLC8A3	6547	broad.mit.edu	37	chr14	70527751	70527751	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatcattccccgtcattccTggcacatgcagtccagtccc	6	16	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70527751	A	A	70527751	1	1	118	0	1	0	0	0	0	0	0	0	14822	1595	55	5		5	SLC8A3	14	70527751	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	83167	70527751	36821789	733	111935											
PCNX	22990	broad.mit.edu	37	chr14	71413833	71413833	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagaaaagacagcaatGgaccgaggtaaggaaaccta	12	8	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71413833	T	T	71413833	4	4	118	1	0	0	0	0	0	1	0	0	11685	1349	47	2	361	2	PCNX	14	71413833	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	886082	71413833	35935707	734	111936											
SIPA1L1	26037	broad.mit.edu	37	chr14	72165754	72165754	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccatggctttagcaagatCccagtgtcggaactctccta	8	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72165754	T	T	72165754	3	4	118	1	0	0	0	0	1	0	0	0	14442	855	30	4	3469	4	SIPA1L1	14	72165754	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	751921	72165754	35183786	735	111937											
C14orf179	112752	broad.mit.edu	37	chr14	76488667	76488667	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgacttctctttccttgTagacttcctctgctaaatta	4	10	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76488667	G	G	76488667	1	3	118	0	1	0	0	0	0	0	0	0	1775	1653	57	5		5	C14orf179	14	76488667	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4322913	76488667	30860873	736	111938											
NRXN3	9369	broad.mit.edu	37	chr14	79181428	79181429	+	Frame_Shift_Ins	INS	-	A	A													gtgcaaggacggctggaaccINSgcttcatctgcgactgcacc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79181429	A	A	79181428	7	5	118	1	0	1	1	0	0	0	0	0	10762	652	23	0	881	0	NRXN3	14	79181428	Frame_Shift_Ins	INS	-	TCGA-44-4112-01A-01D-1458-08	2692761	79181428	28168112	737	111939											
C14orf145	145508	broad.mit.edu	37	chr14	81371380	81371380	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacatggatatacatatattCatgtccctaacccagactat	5	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81371380	A	A	81371380	1	1	118	0	1	0	0	0	0	0	0	0	1762	841	29	3		3	C14orf145	14	81371380	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2189952	81371380	25978160	738	111940											
IFI27L1	122509	broad.mit.edu	37	chr14	94563224	94563224	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgaataaagtcaaaactcAaccaacaggtggaagtccaa	7	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94563224	T	T	94563224	1	4	118	0	1	0	0	0	0	0	0	0	7583	145	5	5		5	IFI27L1	14	94563224	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	13191844	94563224	12786316	739	111941											
SERPINA11	256394	broad.mit.edu	37	chr14	94909642	94909642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgtcggcagcctgagCcatgggagagaggcatttcc	14	11	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94909642	A	A	94909642	1	1	118	0	1	0	0	0	0	0	0	0	14201	754	26	3		3	SERPINA11	14	94909642	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	346418	94909642	12439898	740	111942											
SERPINA9	327657	broad.mit.edu	37	chr14	94931009	94931009	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctgcaggtgcttccagcTtggacttttttgcaaatatt	8	8	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94931009	A	A	94931009	1	1	118	0	1	0	0	0	0	0	0	0	14208	1624	56	5		5	SERPINA9	14	94931009	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	21367	94931009	12418531	741	111943											
SERPINA9	327657	broad.mit.edu	37	chr14	94931156	94931156	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttccagattgtaggaggcaGaaatggaaaatctggggatg	14	4	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94931156	A	A	94931156	3	1	118	1	0	0	0	0	1	0	0	0	14208	942	33	4	323	4	SERPINA9	14	94931156	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	147	94931156	12418384	742	111944											
SERPINA4	5267	broad.mit.edu	37	chr14	95029670	95029670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggtgggtgttacattgCctttcacaagcccatctgca	11	10	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95029670	A	A	95029670	1	1	118	0	1	0	0	0	0	0	0	0	14204	754	26	3		3	SERPINA4	14	95029670	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	98514	95029670	12319870	743	111945											
ASPG	374569	broad.mit.edu	37	chr14	104552111	104552111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtccccggtccggcatgGcgcgcgcggtggggcccgag	20	14	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104552111	T	T	104552111	3	4	118	1	0	0	0	0	1	0	0	0	1056	1203	42	3	6	3	ASPG	14	104552111	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	9522441	104552111	2797429	744	111946											
C15orf2	23742	broad.mit.edu	37	chr15	24921921	24921921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtccggaaagaggatgCctgatgagaagcctttctgt	13	7	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921921	A	A	24921921	3	1	118	1	0	0	0	0	1	0	0	0	1797	739	26	3	909	3	C15orf2	15	24921921	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08		24921921	77609471	745	111947											
SNRPN	6638	broad.mit.edu	37	chr15	25154728	25154728	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccatattttggcagttcgTgtgcatatgctgtgcagact	10	9	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25154728	A	A	25154728	1	1	118	0	1	0	0	0	0	0	0	0	14984	1711	59	5		5	SNRPN	15	25154728	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	232807	25154728	77376664	746	111948											
GABRB3	2562	broad.mit.edu	37	chr15	27160146	27160146	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacaataggatgcagtctgTttaagaagcgtggagagtgt	14	5	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27160146	C	C	27160146	1	2	118	0	1	0	0	0	0	0	0	0	6228	1740	60	5		5	GABRB3	15	27160146	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2005418	27160146	75371246	747	111949											
GABRA5	2558	broad.mit.edu	37	chr15	27185175	27185175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaccgtgatcttatcacaGgtgtccttttggctgaaccg	10	10	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27185175	T	T	27185175	3	4	118	1	0	0	0	0	1	0	0	0	6224	991	35	2	854	2	GABRA5	15	27185175	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	25029	27185175	75346217	748	111950											
OCA2	4948	broad.mit.edu	37	chr15	28230275	28230275	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggcagagaggacggcCgcgatgagacagagcatgat	16	7	0	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28230275	A	A	28230275	2	1	118	1	0	0	0	0	0	0	0	1	10910	639	23	1		1	OCA2	15	28230275	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1045100	28230275	74301117	749	111951											
C15orf55	256646	broad.mit.edu	37	chr15	34640257	34640257	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccctttctcccaccaacttCtgacccaccagaccacccac	2	22	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34640257	A	A	34640257	3	1	118	1	0	0	0	0	1	0	0	0	1816	913	32	3	110	3	C15orf55	15	34640257	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	6409982	34640257	67891135	750	111952											
C15orf41	84529	broad.mit.edu	37	chr15	36910096	36910097	+	Intron	DNP	GG	TT	TT													gggcaagccaattatggcaaGgataaaagccatcaatacat							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36910097	TT	TT	36910096	1	4	118	0	1	0	0	0	0	0	0	0	1808	1015	35	2		2	C15orf41	15	36910096	Intron	DNP	GG	TCGA-44-4112-01A-01D-1458-08	2269839	36910096	65621296	751	111953											
PLCB2	5330	broad.mit.edu	37	chr15	40582480	40582480	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagggaaccatttccccatCaaaacacactgtccttccgt	6	14	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40582480	T	T	40582480	1	4	118	0	1	0	0	0	0	0	0	0	12123	841	29	4		4	PLCB2	15	40582480	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3672384	40582480	61948912	752	111954											
CATSPER2	117155	broad.mit.edu	37	chr15	43940260	43940260	+	5'UTR	DEL	G	-	-													tcttgttggtaagcggccatGtctgctaagaaaatgtaagc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43940260	-	-	43940260	6	5	118	0	1	1	0	1	0	0	0	0	2714	1391	48	0		0	CATSPER2	15	43940260	5'UTR	DEL	G	TCGA-44-4112-01A-01D-1458-08	3357780	43940260	58591132	753	111955											
GATM	2628	broad.mit.edu	37	chr15	45654417	45654417	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaactttaatggtagtgaTacctgcattgaaagagagat	10	4	0	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45654417	C	C	45654417	3	2	118	1	0	0	0	0	1	0	0	0	6325	1406	49	5	113	5	GATM	15	45654417	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	1714157	45654417	56876975	754	111956											
MYEF2	50804	broad.mit.edu	37	chr15	48441613	48441613	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatttgggaattttgtgttTttgtttcaaaaacataagga	10	2	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48441613	A	A	48441613	1	1	118	0	1	0	0	0	0	0	0	0	10118	1856	64	5		5	MYEF2	15	48441613	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2787196	48441613	54089779	755	111957											
CYP19A1	1588	broad.mit.edu	37	chr15	51504464	51504464	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagaaccagagaggatttAacagttgacattttcaagag	9	6	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51504464	C	C	51504464	1	2	118	0	1	0	0	0	0	0	0	0	4181	377	13	5		5	CYP19A1	15	51504464	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	3062851	51504464	51026928	756	111958											
TCF12	6938	broad.mit.edu	37	chr15	57212142	57212142	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaacaacgcatggccgctAtagggaccgacaaggagctg	13	11	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57212142	T	T	57212142	3	4	118	1	0	0	0	0	1	0	0	0	15809	449	16	5	33	5	TCF12	15	57212142	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	5707678	57212142	45319250	757	111959											
AQP9	366	broad.mit.edu	37	chr15	58465266	58465266	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccaatcttcccttgcaGgtggtcacatcaacccagct	6	15	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58465266	T	T	58465266	5	4	118	1	0	0	0	0	0	0	1	0	835	1014	35	2	248	2	AQP9	15	58465266	Splice_Site	SNP	G	TCGA-44-4112-01A-01D-1458-08	1253124	58465266	44066126	758	111960											
APH1B	83464	broad.mit.edu	37	chr15	63579603	63579603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggaaaagagttaacaGtgtttttcttcctgtttagt	10	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63579603	T	T	63579603	1	4	118	0	1	0	0	0	0	0	0	0	774	1044	36	3		3	APH1B	15	63579603	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	5114337	63579603	38951789	759	111961											
HERC1	8925	broad.mit.edu	37	chr15	64067496	64067496	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcataaaagacacgctggagTacaagcagtcgttttctaag	10	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64067496	A	A	64067496	2	1	118	1	0	0	0	0	0	0	0	1	7124	1625	57	5		5	HERC1	15	64067496	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	487893	64067496	38463896	760	111962											
PAQR5	54852	broad.mit.edu	37	chr15	69672372	69672372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctggccccctcgaccGgcctgtctccttcaggagcc	9	19	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69672372	T	T	69672372	1	4	118	0	1	0	0	0	0	0	0	0	11532	1131	39	1		1	PAQR5	15	69672372	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	5604876	69672372	32859020	761	111963											
TLE3	7090	broad.mit.edu	37	chr15	70353100	70353100	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggggagggaagagaagCtgaactcctctctgccctgc	14	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70353100	G	G	70353100	1	3	118	0	1	0	0	0	0	0	0	0	16063	812	28	4		4	TLE3	15	70353100	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	680728	70353100	32178292	762	111964											
LRRC49	54839	broad.mit.edu	37	chr15	71305143	71305143	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttctattgtgtctcttcagGtgacacagaatgatatgata	8	6	3	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71305143	C	C	71305143	3	2	118	1	0	0	0	0	1	0	0	0	9093	1275	44	4	1648	4	LRRC49	15	71305143	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	952043	71305143	31226249	763	111965											
STRA6	64220	broad.mit.edu	37	chr15	74481407	74481407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatagaccttgggtctccCcgctttcattccccactgca	8	16	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74481407	T	T	74481407	1	4	118	0	1	0	0	0	0	0	0	0	15440	638	22	4		4	STRA6	15	74481407	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3176264	74481407	28049985	764	111966											
SEMA7A	8482	broad.mit.edu	37	chr15	74707191	74707191	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgctcaccttgccaggccgCgggttgggaaggcttgagtg	16	11	1	1	rs147975982		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74707191	T	T	74707191	2	4	118	1	0	0	0	0	0	0	0	1	14156	755	27	4		4	SEMA7A	15	74707191	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	225784	74707191	27824201	765	111967											
C15orf26	161502	broad.mit.edu	37	chr15	81436103	81436103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcccatgtgaactgctGgcaggctgccttccctgacc	11	15	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81436103	T	T	81436103	3	4	118	1	0	0	0	0	1	0	0	0	1800	1357	47	2	596	2	C15orf26	15	81436103	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	6728912	81436103	21095289	766	111968											
SH3GL3	6457	broad.mit.edu	37	chr15	84255729	84255729	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaataattttgcacttctgCtgcaggtagaacaagtcagc	10	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84255729	G	G	84255729	1	3	118	0	1	0	0	0	0	0	0	0	14365	812	28	4		4	SH3GL3	15	84255729	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2819626	84255729	18275663	767	111969											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84659802	84659802	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaccaaagagcaaaagcctGaacctaacatagtttcctgc	6	11	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84659802	C	C	84659802	1	2	118	0	1	0	0	0	0	0	0	0	276	1305	45	4		4	ADAMTSL3	15	84659802	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	404073	84659802	17871590	768	111970											
NTRK3	4916	broad.mit.edu	37	chr15	88472600	88472600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggagcatttgggagagcCccagctcacccttggcctgg	14	12	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88472600	A	A	88472600	3	1	118	1	0	0	0	0	1	0	0	0	10803	623	22	2	580	2	NTRK3	15	88472600	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3812798	88472600	14058792	769	111971											
CACNA1H	8912	broad.mit.edu	37	chr16	1262039	1262039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacatgttcgtgggcgtcGtggtcgagaacttccacaag	12	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1262039	T	T	1262039	3	4	118	1	0	0	0	0	1	0	0	0	2571	1145	40	3	4754	3	CACNA1H	16	1262039	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08		1262039	89092714	770	111972											
BAIAP3	8938	broad.mit.edu	37	chr16	1396022	1396022	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctcttctatacggagctGcttcggaagaaggtggacac	11	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1396022	T	T	1396022	2	4	118	1	0	0	0	0	0	0	0	1	1309	1306	46	3		3	BAIAP3	16	1396022	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	133983	1396022	88958731	771	111973											
RPL3L	6123	broad.mit.edu	37	chr16	2002992	2002992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgcccaccaccactaggGgcggcgtttctacaattgtc	9	16	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2002992	T	T	2002992	3	4	118	1	0	0	0	0	1	0	0	0	13705	1232	43	2	1007	2	RPL3L	16	2002992	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	606970	2002992	88351761	772	111974											
TSC2	7249	broad.mit.edu	37	chr16	2114374	2114374	+	Frame_Shift_Del	DEL	G	-	-													acccagttgctggtggacctGgcagagggctgccacacaca							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2114374	-	-	2114374	7	5	118	1	0	1	0	1	0	0	0	0	16731	1335	47	0	1599	0	TSC2	16	2114374	Frame_Shift_Del	DEL	G	TCGA-44-4112-01A-01D-1458-08	111382	2114374	88240379	773	111975											
SRRM2	23524	broad.mit.edu	37	chr16	2818263	2818263	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggtggcactgaagagGtgagggagcttgacttttag	16	6	0	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2818263	T	T	2818263	5	4	118	1	0	0	0	0	0	0	1	0	15287	1275	44	3	7772	3	SRRM2	16	2818263	Splice_Site	SNP	G	TCGA-44-4112-01A-01D-1458-08	703889	2818263	87536490	774	111976											
CLUAP1	23059	broad.mit.edu	37	chr16	3554624	3554624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccctaaagctgtcaatagGttggaaataagaaggaaaag	11	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3554624	T	T	3554624	1	4	118	0	1	0	0	0	0	0	0	0	3601	1276	44	3		3	CLUAP1	16	3554624	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	736361	3554624	86800129	775	111977											
CORO7	79585	broad.mit.edu	37	chr16	4390918	4390918	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccagaatcaaagaccactCacctttgactgcaggtagaa	7	12	2	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4390918	G	G	4390918	1	3	118	0	1	0	0	0	0	0	0	0	3791	841	29	4		4	CORO7	16	4390918	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	836294	4390918	85963835	776	111978											
CPPED1	55313	broad.mit.edu	37	chr16	12758931	12758931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttctggtaggtaccccCggcattcctgtggtagtggc	15	10	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12758931	A	A	12758931	3	1	118	1	0	0	0	0	1	0	0	0	3854	652	23	1	191	1	CPPED1	16	12758931	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	8368013	12758931	77595822	777	111979											
XYLT1	64131	broad.mit.edu	37	chr16	17228386	17228386	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggcccgtcgaagacccagGcgggcaaaggagtggtacaa	15	11	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17228386	A	A	17228386	2	1	118	1	0	0	0	0	0	0	0	1	17590	1190	42	4		4	XYLT1	16	17228386	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	4469455	17228386	73126367	778	111980											
IQCK	124152	broad.mit.edu	37	chr16	19800281	19800281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtggtatttgatttaatGgggaacttttgtgaggtgga	14	2	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19800281	T	T	19800281	1	4	118	0	1	0	0	0	0	0	0	0	7883	1363	47	2		2	IQCK	16	19800281	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2571895	19800281	70554472	779	111981											
GP2	2813	broad.mit.edu	37	chr16	20328494	20328494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctatcaggtaccaggctcCatgccaggctctgaagagtt	11	12	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20328494	A	A	20328494	1	1	118	0	1	0	0	0	0	0	0	0	6647	609	21	2		2	GP2	16	20328494	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	528213	20328494	70026259	780	111982											
ACSM2A	123876	broad.mit.edu	37	chr16	20480763	20480763	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacttgctcgctgcttgatGtttatctcaggcttctctag	8	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20480763	A	A	20480763	1	1	118	0	1	0	0	0	0	0	0	0	183	1392	48	4		4	ACSM2A	16	20480763	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	152269	20480763	69873990	781	111983											
THUMPD1	55623	broad.mit.edu	37	chr16	20748250	20748250	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatccttctgtggcttgactTgcaagttcaggtttggctcc	11	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20748250	A	A	20748250	2	1	118	1	0	0	0	0	0	0	0	1	16005	1799	63	5		5	THUMPD1	16	20748250	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	267487	20748250	69606503	782	111984											
ZP2	7783	broad.mit.edu	37	chr16	21212978	21212978	+	Intron	SNP	G	A	A													tatcaggatgttcattttagGgagaagtttgagatcattta							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21212978	A	A	21212978	1	1	118	0	1	0	0	0	0	0	0	0	18345	1247	43	4		4	ZP2	16	21212978	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	464728	21212978	69141775	783	111985	487	2									
ZP2	7783	broad.mit.edu	37	chr16	21212981	21212981	+	Intron	SNP	G	A	A													caggatgttcattttagggaGaagtttgagatcatttaagc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21212981	A	A	21212981	1	1	118	0	1	0	0	0	0	0	0	0	18345	957	33	4		4	ZP2	16	21212981	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3	21212981	69141772	784	111986	487	2									
OTOA	146183	broad.mit.edu	37	chr16	21742139	21742139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgttttttcactttactGgttattatctctttttagac	5	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21742139	T	T	21742139	1	4	118	0	1	0	0	0	0	0	0	0	11396	1363	47	2		2	OTOA	16	21742139	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	529158	21742139	68612614	785	111987											
VWA3A	146177	broad.mit.edu	37	chr16	22166855	22166855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattttcagctcccatccagTcataaacttcacactcattt	3	13	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22166855	A	A	22166855	1	1	118	0	1	0	0	0	0	0	0	0	17367	1682	58	5		5	VWA3A	16	22166855	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	424716	22166855	68187898	786	111988											
EEF2K	29904	broad.mit.edu	37	chr16	22268069	22268069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactccccatcccaccagGtggacatcatgcagatgtgc	8	17	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22268069	T	T	22268069	3	4	118	1	0	0	0	0	1	0	0	0	4970	1275	44	3	641	3	EEF2K	16	22268069	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	101214	22268069	68086684	787	111989											
USP31	57478	broad.mit.edu	37	chr16	23093759	23093759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggataaaggatttccatacCtgccgaaatctctttagatg	8	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23093759	A	A	23093759	3	1	118	1	0	0	0	0	1	0	0	0	17189	695	24	2	2128	2	USP31	16	23093759	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	825690	23093759	67260994	788	111990											
ARHGAP17	55114	broad.mit.edu	37	chr16	24975638	24975638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggttccacctgcaaaaCaaaggggtcaccagcatctg	10	12	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24975638	A	A	24975638	1	1	118	0	1	0	0	0	0	0	0	0	869	493	17	3		3	ARHGAP17	16	24975638	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1881879	24975638	65379115	789	111991											
IL4R	3566	broad.mit.edu	37	chr16	27374034	27374034	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcccaagtgcagggcccaAggaggcacctccctggggca	14	14	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27374034	T	T	27374034	3	4	118	1	0	0	0	0	1	0	0	0	7768	72	3	5	1413	5	IL4R	16	27374034	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	2398396	27374034	62980719	790	111992											
IL21R	50615	broad.mit.edu	37	chr16	27454550	27454550	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcattcatggccaagaacaGagaccaagggcacgagcact	10	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27454550	T	T	27454550	1	4	118	0	1	0	0	0	0	0	0	0	7741	957	33	3		3	IL21R	16	27454550	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	80516	27454550	62900203	791	111993											
CD2BP2	10421	broad.mit.edu	37	chr16	30365716	30365717	+	Intron	INS	-	A	A													aatacttccggatctggaccINScaaatattccccaaatattt							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30365717	A	A	30365716	6	5	118	0	1	1	1	0	0	0	0	0	3025	638	22	0		0	CD2BP2	16	30365716	Intron	INS	-	TCGA-44-4112-01A-01D-1458-08	2911166	30365716	59989037	792	111994											
ITGAD	3681	broad.mit.edu	37	chr16	31421644	31421644	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggcgagtgatgcgggtgGcaggcgtgtctctgggatat	19	6	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31421644	A	A	31421644	1	1	118	0	1	0	0	0	0	0	0	0	7954	1218	42	4		4	ITGAD	16	31421644	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1055928	31421644	58933109	793	111995											
COX6A2	1339	broad.mit.edu	37	chr16	31439550	31439550	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggtaggggagccccCggatccgcccgttccccact	15	16	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31439550	G	G	31439550	1	3	118	0	1	0	0	0	0	0	0	0	3807	667	23	4		4	COX6A2	16	31439550	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	17906	31439550	58915203	794	111996											
LONP2	83752	broad.mit.edu	37	chr16	48303939	48303939	+	Missense_Mutation	SNP	T	A	A													tttgacagaccgcctggacaTtagggcagcccggattcttc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48303939	A	A	48303939	3	1	118	1	0	0	0	0	1	0	0	0	8980	1493	52	5	1021	5	LONP2	16	48303939	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	16864389	48303939	42050814	795	111997	488	2									
LONP2	83752	broad.mit.edu	37	chr16	48303941	48303941	+	Missense_Mutation	SNP	A	T	T													tgacagaccgcctggacattAgggcagcccggattcttctg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48303941	T	T	48303941	3	4	118	1	0	0	0	0	1	0	0	0	8980	411	15	5	1023	5	LONP2	16	48303941	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	2	48303941	42050812	796	111998	488	2									
ZNF423	23090	broad.mit.edu	37	chr16	49672282	49672282	+	Frame_Shift_Del	DEL	C	-	-													gtagtcgcacatgaagtcgtCcttcttggcttccttctccg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49672282	-	-	49672282	7	5	118	1	0	1	0	1	0	0	0	0	18025	855	30	0	3093	0	ZNF423	16	49672282	Frame_Shift_Del	DEL	C	TCGA-44-4112-01A-01D-1458-08	1368341	49672282	40682471	797	111999											
MT1M	4499	broad.mit.edu	37	chr16	56667828	56667828	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttttttcaatacgatactGagccatttgctgcatttctt	5	8	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56667828	A	A	56667828	1	1	118	0	1	0	0	0	0	0	0	0	9997	1305	45	4		4	MT1M	16	56667828	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	6995546	56667828	33686925	798	112000											
CCDC135	84229	broad.mit.edu	37	chr16	57762247	57762247	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactgctgatgcagagctggTggagaggtctctgtagttcc	14	9	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57762247	A	A	57762247	1	1	118	0	1	0	0	0	0	0	0	0	2795	1711	59	5		5	CCDC135	16	57762247	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1094419	57762247	32592506	799	112001											
ESRP2	80004	broad.mit.edu	37	chr16	68265245	68265245	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagggctcgctctgctgatGtcatctgaatgaaggcatcg	12	10	3	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68265245	A	A	68265245	3	1	118	1	0	0	0	0	1	0	0	0	5301	1377	48	4	622	4	ESRP2	16	68265245	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	10502998	68265245	22089508	800	112002											
FTSJD1	55783	broad.mit.edu	37	chr16	71318653	71318653	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttaaattattcagcttttCttgttccgcctttcccatgc	4	13	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71318653	A	A	71318653	4	1	118	1	0	0	0	0	0	1	0	0	6150	922	32	3	1145	3	FTSJD1	16	71318653	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	3053408	71318653	19036100	801	112003											
ZNF23	7571	broad.mit.edu	37	chr16	71482343	71482343	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catacatttgaaaggtttctCcccagtatgtatcctctgat	6	10	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71482343	A	A	71482343	4	1	118	1	0	0	0	0	0	1	0	0	17909	864	30	3	350	3	ZNF23	16	71482343	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	163690	71482343	18872410	802	112004											
CHST4	10164	broad.mit.edu	37	chr16	71571552	71571552	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgctttccacacaaatgcCagggatgcccttaatgtctc	7	14	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71571552	A	A	71571552	2	1	118	1	0	0	0	0	0	0	0	1	3437	581	21	2		2	CHST4	16	71571552	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	89209	71571552	18783201	803	112005											
PMFBP1	83449	broad.mit.edu	37	chr16	72159707	72159707	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactccaagcctcacaaagaGgaagcaggccttctctgcac	8	14	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72159707	A	A	72159707	1	1	118	0	1	0	0	0	0	0	0	0	12229	1015	35	4		4	PMFBP1	16	72159707	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	588155	72159707	18195046	804	112006											
CDH13	1012	broad.mit.edu	37	chr16	83636234	83636235	+	Intron	DNP	GG	TT	TT													caaacaccaaccaccactgtGgtcacagctacaattactga							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	83636235	TT	TT	83636234	1	4	118	0	1	0	0	0	0	0	0	0	3129	1363	47	2		2	CDH13	16	83636234	Intron	DNP	GG	TCGA-44-4112-01A-01D-1458-08	11476527	83636234	6718519	805	112007											
MBTPS1	8720	broad.mit.edu	37	chr16	84103628	84103628	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttactgttgaagtctgttCtgcaccattttttgactaaa	6	8	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84103628	G	G	84103628	3	3	118	1	0	0	0	0	1	0	0	0	9454	922	32	4	1400	4	MBTPS1	16	84103628	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	467394	84103628	6251125	806	112008											
FOXC2	2303	broad.mit.edu	37	chr16	86600890	86600890	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagggcccccctcgctcCcccggccgcagtccgtgcgc	11	22	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86600890	A	A	86600890	1	1	118	0	1	0	0	0	0	0	0	0	6053	638	22	2		2	FOXC2	16	86600890	5'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	2497262	86600890	3753863	807	112009											
WDR81	124997	broad.mit.edu	37	chr17	1640949	1640949	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccacctcctgctgggctcAgacaacggggttatccgcct	11	16	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1640949	T	T	1640949	2	4	118	1	0	0	0	0	0	0	0	1	17457	175	7	5		5	WDR81	17	1640949	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08		1640949	79554261	808	112010											
P2RX5	5026	broad.mit.edu	37	chr17	3583113	3583113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgttcacctgggacggcCctgcagggtgcctcccctcc	12	17	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3583113	A	A	3583113	1	1	118	0	1	0	0	0	0	0	0	0	11437	638	22	2		2	P2RX5	17	3583113	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1942164	3583113	77612097	809	112011											
YBX2	51087	broad.mit.edu	37	chr17	7193314	7193314	+	Frame_Shift_Del	DEL	G	-	-													acctgggccggaatctgggcGgggggactcgctcatctccc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7193314	-	-	7193314	7	5	118	1	0	1	0	1	0	0	0	0	17597	1116	39	0	285	0	YBX2	17	7193314	Frame_Shift_Del	DEL	G	TCGA-44-4112-01A-01D-1458-08	3610201	7193314	74001896	810	112012											
NLGN2	57555	broad.mit.edu	37	chr17	7318563	7318563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatttggcaaggagggatGggcttctggcccccagtaag	14	10	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7318563	T	T	7318563	1	4	118	0	1	0	0	0	0	0	0	0	10557	1363	47	2		2	NLGN2	17	7318563	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	125249	7318563	73876647	811	112013											
PIK3R5	23533	broad.mit.edu	37	chr17	8790037	8790037	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagaggcagccagtcaggggGagctggtgaggtggaagcag	20	6	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8790037	T	T	8790037	1	4	118	0	1	0	0	0	0	0	0	0	12017	1189	41	3		3	PIK3R5	17	8790037	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1471474	8790037	72405173	812	112014											
DHRS7C	201140	broad.mit.edu	37	chr17	9680700	9680700	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtaccctcatcacagggctCcgctacctccgcggtaacta	9	16	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9680700	A	A	9680700	1	1	118	0	1	0	0	0	0	0	0	0	4537	870	30	3		3	DHRS7C	17	9680700	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	890663	9680700	71514510	813	112015											
MYH8	4626	broad.mit.edu	37	chr17	10299838	10299838	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaggtcctcccagggaTatatggagtagggaggactg	16	6	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10299838	A	A	10299838	1	1	118	0	1	0	0	0	0	0	0	0	10135	1421	49	5		5	MYH8	17	10299838	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	619138	10299838	70895372	814	112016											
MYH8	4626	broad.mit.edu	37	chr17	10303967	10303967	+	Frame_Shift_Del	DEL	C	-	-													ttccacctgagcagaagttgCcccaccggcttcttccagcc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10303967	-	-	10303967	7	5	118	1	0	1	0	1	0	0	0	0	10135	739	26	0	2394	0	MYH8	17	10303967	Frame_Shift_Del	DEL	C	TCGA-44-4112-01A-01D-1458-08	4129	10303967	70891243	815	112017											
MYH1	4619	broad.mit.edu	37	chr17	10397739	10397739	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccaccaggtcctggagccTgagaatattcttgcggtctt	11	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10397739	A	A	10397739	3	1	118	1	0	0	0	0	1	0	0	0	10123	1579	55	5	228	5	MYH1	17	10397739	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	93772	10397739	70797471	816	112018											
MYH1	4619	broad.mit.edu	37	chr17	10408678	10408678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcaaagggacaggaatagCatcaggtaggatttacagaa	12	5	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10408678	A	A	10408678	1	1	118	0	1	0	0	0	0	0	0	0	10123	725	25	3		3	MYH1	17	10408678	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	10939	10408678	70786532	817	112019											
MYH3	4621	broad.mit.edu	37	chr17	10550789	10550789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagattctaccatggccCaatagttcctattcatctta	5	12	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10550789	A	A	10550789	1	1	118	0	1	0	0	0	0	0	0	0	10130	609	21	2		2	MYH3	17	10550789	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	142111	10550789	70644421	818	112020											
MYOCD	93649	broad.mit.edu	37	chr17	12626139	12626139	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacatcaaattctagaactGatccttttcatttcaaccct	3	11	4	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12626139	T	T	12626139	1	4	118	0	1	0	0	0	0	0	0	0	10181	1305	45	3		3	MYOCD	17	12626139	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2075350	12626139	68569071	819	112021											
MYO15A	51168	broad.mit.edu	37	chr17	18023924	18023924	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgggcggccctgctgtcaggGaggcggcctacaaacgcttc	15	14	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18023924	A	A	18023924	3	1	118	1	0	0	0	0	1	0	0	0	10157	1175	41	4	1812	4	MYO15A	17	18023924	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	5397785	18023924	63171286	820	112022											
SLC5A10	125206	broad.mit.edu	37	chr17	18918281	18918281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaatggcgggcgggcctcAggcattagagcccaggcggg	18	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18918281	T	T	18918281	1	4	118	0	1	0	0	0	0	0	0	0	14776	203	7	5		5	SLC5A10	17	18918281	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	894357	18918281	62276929	821	112023											
PIGS	94005	broad.mit.edu	37	chr17	26881652	26881652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggaagtctttctacagGgatatggtttattttcctag	9	6	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881652	T	T	26881652	1	4	118	0	1	0	0	0	0	0	0	0	11993	1247	43	2		2	PIGS	17	26881652	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	7963371	26881652	54313558	822	112024											
GIT1	28964	broad.mit.edu	37	chr17	27910597	27910597	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgctgcagcactcgtcacaCaccagcacacccctgctgat	7	18	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27910597	A	A	27910597	2	1	118	1	0	0	0	0	0	0	0	1	6460	465	17	3		3	GIT1	17	27910597	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1028945	27910597	53284613	823	112025											
SLC6A4	6532	broad.mit.edu	37	chr17	28545983	28545984	+	Intron	DNP	CC	AT	AT													aagacaatttcactccctgcCcacgtctgtcccaggatagc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	28545984	AT	AT	28545983	1	1	118	0	1	0	0	0	0	0	0	0	14800	638	22	2		2	SLC6A4	17	28545983	Intron	DNP	CC	TCGA-44-4112-01A-01D-1458-08	635386	28545983	52649227	824	112026											
C17orf42	79736	broad.mit.edu	37	chr17	29231000	29231000	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagaaccctgtcttagcCacttcccaacccaatgccca	5	17	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29231000	G	G	29231000	1	3	118	0	1	0	0	0	0	0	0	0	1872	609	21	4		4	C17orf42	17	29231000	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	685017	29231000	51964210	825	112027											
CCT6B	10693	broad.mit.edu	37	chr17	33266313	33266313	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggtaacagagcaagggtTaacacactcctcaataaaag	8	9	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33266313	A	A	33266313	3	1	118	1	0	0	0	0	1	0	0	0	2988	1754	61	5	510	5	CCT6B	17	33266313	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	4035313	33266313	47928897	826	112028											
SLFN11	91607	broad.mit.edu	37	chr17	33687261	33687261	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagacaaaccataattaCctgaaaataaaagttgctgg	8	6	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33687261	A	A	33687261	5	1	118	1	0	0	0	0	0	0	1	0	14847	521	18	3	1518	3	SLFN11	17	33687261	Splice_Site	SNP	C	TCGA-44-4112-01A-01D-1458-08	420948	33687261	47507949	827	112029											
KRTAP4-9	100132386	broad.mit.edu	37	chr17	39261628	39261628	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcccacccagatcctccCcgttctgacaccatggtcag	8	17	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39261628	A	A	39261628	1	1	118	0	1	0	0	0	0	0	0	0	8629	638	22	2		2	KRTAP4-9	17	39261628	5'Flank	SNP	C	TCGA-44-4112-01A-01D-1458-08	5574367	39261628	41933582	828	112030											
KRTAP4-1	85285	broad.mit.edu	37	chr17	39346675	39346675	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatccacctgctgccaaccAtcctgtgtgaccagatgctg	9	14	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39346675	G	G	39346675	1	3	118	0	1	0	0	0	0	0	0	0	8620	232	8	5		5	KRTAP4-1	17	39346675	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	85047	39346675	41848535	829	112031											
KRT38	8687	broad.mit.edu	37	chr17	39594296	39594296	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgccctgaggacctcaTcagaattgagtaaataattt	8	9	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39594296	A	A	39594296	1	1	118	0	1	0	0	0	0	0	0	0	8546	1450	50	5		5	KRT38	17	39594296	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	247621	39594296	41600914	830	112032											
HDAC5	10014	broad.mit.edu	37	chr17	42168703	42168703	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgctgcagcagggaggcaTgcccgtgggggctcccgtcg	17	13	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42168703	A	A	42168703	3	1	118	1	0	0	0	0	1	0	0	0	7077	1464	51	5	2114	5	HDAC5	17	42168703	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	2574407	42168703	39026507	831	112033											
FMNL1	752	broad.mit.edu	37	chr17	43320574	43320574	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctcaagagtaaggcagcCcagaaggcccccagcaaggc	12	14	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43320574	A	A	43320574	2	1	118	1	0	0	0	0	0	0	0	1	6009	610	22	2		2	FMNL1	17	43320574	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1151871	43320574	37874636	832	112034											
SKAP1	8631	broad.mit.edu	37	chr17	46247980	46247980	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcttatacctccttttcGtcgagtgccactctcatcct	5	15	2	0	rs142272724		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46247980	A	A	46247980	4	1	118	1	0	0	0	0	0	1	0	0	14468	1153	40	4	223	4	SKAP1	17	46247980	Nonsense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2927406	46247980	34947230	833	112035											
CA10	56934	broad.mit.edu	37	chr17	49708884	49708884	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagaagggggacattctaGgttacgtcaattcacagttg	12	7	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49708884	T	T	49708884	1	4	118	0	1	0	0	0	0	0	0	0	2537	1015	35	2		2	CA10	17	49708884	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	3460904	49708884	31486326	834	112036											
CA10	56934	broad.mit.edu	37	chr17	49710885	49710885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggacagtccttcccctGtaaactgaagttgatattgg	10	8	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49710885	T	T	49710885	3	4	118	1	0	0	0	0	1	0	0	0	2537	1386	48	3	78	3	CA10	17	49710885	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2001	49710885	31484325	835	112037											
CA10	56934	broad.mit.edu	37	chr17	49731069	49731069	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtgacattcgtatatAgctcatggttatagtggatg	10	6	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49731069	T	T	49731069	3	4	118	1	0	0	0	0	1	0	0	0	2537	420	15	5	512	5	CA10	17	49731069	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	20184	49731069	31464141	836	112038											
AKAP1	8165	broad.mit.edu	37	chr17	55193622	55193622	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacgtgctccggcaaatcaGgtgagcggagatgcctcagg	15	10	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55193622	C	C	55193622	3	2	118	1	0	0	0	0	1	0	0	0	445	1014	35	4	2454	4	AKAP1	17	55193622	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	5462553	55193622	26001588	837	112039											
OR4D1	26689	broad.mit.edu	37	chr17	56232386	56232386	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctttcctaagctacatctcgGattgacactcaacaactcaa	4	13	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56232386	C	C	56232386	1	2	118	0	1	0	0	0	0	0	0	0	11147	1189	41	4		4	OR4D1	17	56232386	5'Flank	SNP	G	TCGA-44-4112-01A-01D-1458-08	1038764	56232386	24962824	838	112040											
EPX	8288	broad.mit.edu	37	chr17	56270370	56270370	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggggtcttgtggcttgctGaaccctgagtccccatctct	12	12	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56270370	C	C	56270370	1	2	118	0	1	0	0	0	0	0	0	0	5242	1305	45	4		4	EPX	17	56270370	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	37984	56270370	24924840	839	112041											
EPX	8288	broad.mit.edu	37	chr17	56274637	56274637	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcagacagggaggaaggTggtgtcttcccaggaaacag	16	7	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56274637	G	G	56274637	1	3	118	0	1	0	0	0	0	0	0	0	5242	1711	59	5		5	EPX	17	56274637	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	4267	56274637	24920573	840	112042											
MKS1	54903	broad.mit.edu	37	chr17	56294052	56294052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagagcttctcctgccacCcaatcacaatctcctcctct	3	17	4	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56294052	A	A	56294052	3	1	118	1	0	0	0	0	1	0	0	0	9702	623	22	2	1507	2	MKS1	17	56294052	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	19415	56294052	24901158	841	112043											
BZRAP1	9256	broad.mit.edu	37	chr17	56400645	56400645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctggcctctgggttgcCctcaagagctcaccagctcc	12	15	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56400645	A	A	56400645	1	1	118	0	1	0	0	0	0	0	0	0	1587	638	22	2		2	BZRAP1	17	56400645	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	106593	56400645	24794565	842	112044											
TLK2	11011	broad.mit.edu	37	chr17	60598087	60598087	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcttcttcagttttgctatCctcttaggattaaaatttat	4	7	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60598087	A	A	60598087	1	1	118	0	1	0	0	0	0	0	0	0	16067	870	30	3		3	TLK2	17	60598087	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4197442	60598087	20597123	843	112045											
ACE	1636	broad.mit.edu	37	chr17	61561185	61561185	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggccccccatgatcttcCctgactcccaccctgtgcct	6	21	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61561185	A	A	61561185	1	1	118	0	1	0	0	0	0	0	0	0	136	638	22	2		2	ACE	17	61561185	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	963098	61561185	19634025	844	112046											
ACE	1636	broad.mit.edu	37	chr17	61564148	61564148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacagggtctggcctggcCttcacgctgcttcctcttcc	9	16	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61564148	A	A	61564148	1	1	118	0	1	0	0	0	0	0	0	0	136	696	24	2		2	ACE	17	61564148	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2963	61564148	19631062	845	112047											
WIPI1	55062	broad.mit.edu	37	chr17	66425982	66425982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatgatctgcctgccttGgcctcccaaggttccgggat	11	13	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66425982	T	T	66425982	1	4	118	0	1	0	0	0	0	0	0	0	17497	1363	47	2		2	WIPI1	17	66425982	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4861834	66425982	14769228	846	112048											
ABCA10	10349	broad.mit.edu	37	chr17	67186584	67186584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcataattccttatgccCtggtcagaacacttatcaag	6	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67186584	A	A	67186584	3	1	118	1	0	0	0	0	1	0	0	0	29	680	24	2	2673	2	ABCA10	17	67186584	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	760602	67186584	14008626	847	112049											
SDK2	54549	broad.mit.edu	37	chr17	71397871	71397871	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatctcactgaagctcaGgtgtcccacgggcccaggca	12	14	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71397871	A	A	71397871	2	1	118	1	0	0	0	0	0	0	0	1	14082	991	35	4		4	SDK2	17	71397871	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	4211287	71397871	9797339	848	112050											
UNK	85451	broad.mit.edu	37	chr17	73780812	73780812	+	Missense_Mutation	SNP	G	A	A													cgacggtaaaattccagccgGacatagaaccacaactccca							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73780812	A	A	73780812	3	1	118	1	0	0	0	0	1	0	0	0	17126	1174	41	4	85	4	UNK	17	73780812	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	2382941	73780812	7414398	849	112051	489	2									
UNK	85451	broad.mit.edu	37	chr17	73780814	73780814	+	Missense_Mutation	SNP	C	A	A													acggtaaaattccagccggaCatagaaccacaactcccagc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73780814	A	A	73780814	3	1	118	1	0	0	0	0	1	0	0	0	17126	477	17	3	87	3	UNK	17	73780814	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	2	73780814	7414396	850	112052	489	2									
SRP68	6730	broad.mit.edu	37	chr17	74041190	74041190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcagacatcatcactggCcactactgaccacagccttt	7	14	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74041190	A	A	74041190	1	1	118	0	1	0	0	0	0	0	0	0	15274	754	26	3		3	SRP68	17	74041190	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	260376	74041190	7154020	851	112053											
UBE2O	63893	broad.mit.edu	37	chr17	74395027	74395027	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacggagccatcctgccaCatcacgtcggctgaggtcat	10	15	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74395027	T	T	74395027	3	4	118	1	0	0	0	0	1	0	0	0	16994	478	17	4	2240	4	UBE2O	17	74395027	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	353837	74395027	6800183	852	112054											
ENPP7	339221	broad.mit.edu	37	chr17	77707127	77707127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacatgacctcaaaccttGgctcccacggggcagtgcag	11	14	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77707127	T	T	77707127	1	4	118	0	1	0	0	0	0	0	0	0	5177	1363	47	2		2	ENPP7	17	77707127	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3312100	77707127	3488083	853	112055											
SLC26A11	284129	broad.mit.edu	37	chr17	78197143	78197143	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggacagatcaaggtaggcAcggcgcccacccagggcact	13	13	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78197143	G	G	78197143	1	3	118	0	1	0	0	0	0	0	0	0	14630	174	6	5		5	SLC26A11	17	78197143	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	490016	78197143	2998067	854	112056											
RPTOR	57521	broad.mit.edu	37	chr17	78576461	78576461	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcctcattacattttctgGataaccacgcacggatgcgg	8	12	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78576461	T	T	78576461	1	4	118	0	1	0	0	0	0	0	0	0	13776	1189	41	3		3	RPTOR	17	78576461	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	379318	78576461	2618749	855	112057											
PDE6G	5148	broad.mit.edu	37	chr17	79618748	79618748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactcagggacatggccgGgcccagtcctggctcagtca	13	14	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79618748	T	T	79618748	1	4	118	0	1	0	0	0	0	0	0	0	11743	1247	43	2		2	PDE6G	17	79618748	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1042287	79618748	1576462	856	112058											
SMCHD1	23347	broad.mit.edu	37	chr18	2698038	2698038	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgatccatgctttccatcAagtatgttaatctgttatct	6	8	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2698038	T	T	2698038	2	4	118	1	0	0	0	0	0	0	0	1	14902	144	5	5		5	SMCHD1	18	2698038	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08		2698038	75379210	857	112059											
ZFP161	7541	broad.mit.edu	37	chr18	5290717	5290717	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaaagtcttaaaaatagCtaaccaagcactgccttaag	6	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5290717	G	G	5290717	1	3	118	0	1	0	0	0	0	0	0	0	17766	812	28	4		4	ZFP161	18	5290717	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	2592679	5290717	72786531	858	112060											
LAMA1	284217	broad.mit.edu	37	chr18	7015801	7015801	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accctgtgtgtgaggggggcAgacacactctccagtttctg	13	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7015801	T	T	7015801	3	4	118	1	0	0	0	0	1	0	0	0	8677	188	7	5	6349	5	LAMA1	18	7015801	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	1725084	7015801	71061447	859	112061											
RALBP1	10928	broad.mit.edu	37	chr18	9513021	9513021	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtaacagagaagacctcgtCccttcctagtcagggcatca	10	12	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9513021	G	G	9513021	1	3	118	0	1	0	0	0	0	0	0	0	13120	870	30	4		4	RALBP1	18	9513021	5'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	2497220	9513021	68564227	860	112062											
ANKRD29	147463	broad.mit.edu	37	chr18	21209791	21209791	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccccatgcgccatgtgctcGggcaaatgtcaacagtggac	12	13	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21209791	C	C	21209791	1	2	118	0	1	0	0	0	0	0	0	0	657	1131	39	4		4	ANKRD29	18	21209791	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	11696770	21209791	56867457	861	112063											
FAM59A	64762	broad.mit.edu	37	chr18	29867330	29867330	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagggagcccaatctccCcccaggtccctgcaaccatg	10	16	1	0	rs146498252		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29867330	A	A	29867330	2	1	118	1	0	0	0	0	0	0	0	1	5643	610	22	2		2	FAM59A	18	29867330	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	8657539	29867330	48209918	862	112064											
ELP2	55250	broad.mit.edu	37	chr18	33744407	33744407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcagtttatttttacttaCtagcttcattgtttcatctc	3	9	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33744407	T	T	33744407	1	4	118	0	1	0	0	0	0	0	0	0	5122	580	20	4		4	ELP2	18	33744407	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3877077	33744407	44332841	863	112065											
PIK3C3	5289	broad.mit.edu	37	chr18	39535093	39535093	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcgcggaagggttgtttcGgcggggagttccgccgcgtc	18	10	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39535093	T	T	39535093	1	4	118	0	1	0	0	0	0	0	0	0	12007	1131	39	1		1	PIK3C3	18	39535093	5'Flank	SNP	G	TCGA-44-4112-01A-01D-1458-08	5790686	39535093	38542155	864	112066											
SLC14A2	8170	broad.mit.edu	37	chr18	43217060	43217060	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaccttgcagccacaggCcactacaacctcttcttccc	5	17	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43217060	T	T	43217060	2	4	118	1	0	0	0	0	0	0	0	1	14510	726	26	4		4	SLC14A2	18	43217060	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	3681967	43217060	34860188	865	112067											
DCC	1630	broad.mit.edu	37	chr18	50451744	50451744	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagctcacagtcttgggtaAgttagtggctggagatgagt	15	5	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50451744	T	T	50451744	1	4	118	0	1	0	0	0	0	0	0	0	4315	87	3	5		5	DCC	18	50451744	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	7234684	50451744	27625504	866	112068											
DCC	1630	broad.mit.edu	37	chr18	50923679	50923679	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatttcctacttgtatagtCagaagacacaacatctctaa	4	10	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50923679	A	A	50923679	4	1	118	1	0	0	0	0	0	1	0	0	4315	840	29	3	2760	3	DCC	18	50923679	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	471935	50923679	27153569	867	112069											
SERPINB2	5055	broad.mit.edu	37	chr18	61570672	61570672	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacaacttctgctacccaCtaaataaaaacacagaaata	3	10	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61570672	A	A	61570672	1	1	118	0	1	0	0	0	0	0	0	0	14214	580	20	3		3	SERPINB2	18	61570672	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	10646993	61570672	16506576	868	112070											
CDH7	1005	broad.mit.edu	37	chr18	63547735	63547735	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatattgtgagatacgatGacgagggcgggggagaggag	18	3	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63547735	T	T	63547735	3	4	118	1	0	0	0	0	1	0	0	0	3145	1290	45	3	2005	3	CDH7	18	63547735	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1977063	63547735	14529513	869	112071											
RTTN	25914	broad.mit.edu	37	chr18	67733311	67733311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccatatcttgggagttaCagcagtttttttaaatggca	8	6	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67733311	A	A	67733311	1	1	118	0	1	0	0	0	0	0	0	0	13848	493	17	3		3	RTTN	18	67733311	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4185576	67733311	10343937	870	112072											
ZNF516	9658	broad.mit.edu	37	chr18	74154334	74154334	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccgctgccgggcccctgcGcggtgatgtggtccctctcg	15	17	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74154334	A	A	74154334	3	1	118	1	0	0	0	0	1	0	0	0	18087	1087	38	4	2835	4	ZNF516	18	74154334	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	6421023	74154334	3922914	871	112073											
GALR1	2587	broad.mit.edu	37	chr18	74963084	74963085	+	Missense_Mutation	DNP	CC	AA	AA													gctgggagcagtggcccgacCctcgccacaagaaggcctac							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74963085	AA	AA	74963084	3	1	118	1	0	0	0	0	1	0	0	0	6289	623	22	2	582	2	GALR1	18	74963084	Missense_Mutation	DNP	CC	TCGA-44-4112-01A-01D-1458-08	808750	74963084	3114164	872	112074											
LPPR3	79948	broad.mit.edu	37	chr19	814479	814479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggaagccggcatacacGtccacagggtggctgcggta	15	10	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	814479	T	T	814479	3	4	118	1	0	0	0	0	1	0	0	0	9013	1136	40	3	1378	3	LPPR3	19	814479	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08		814479	58314504	873	112075											
MIDN	90007	broad.mit.edu	37	chr19	1254919	1254919	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagatggactgctcccccAcggccagcagcagtgccagt	12	15	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1254919	T	T	1254919	3	4	118	1	0	0	0	0	1	0	0	0	9672	159	6	5	733	5	MIDN	19	1254919	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	440440	1254919	57874064	874	112076											
DAZAP1	26528	broad.mit.edu	37	chr19	1418490	1418490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgaacgtggggtcgattGggaaggattaagccttggtg	17	4	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1418490	T	T	1418490	1	4	118	0	1	0	0	0	0	0	0	0	4277	1363	47	2		2	DAZAP1	19	1418490	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	163571	1418490	57710493	875	112077											
AP3D1	8943	broad.mit.edu	37	chr19	2111839	2111839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagatttctggagcaagaGgagggtcgggttcagtgccc	18	7	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2111839	A	A	2111839	1	1	118	0	1	0	0	0	0	0	0	0	748	1015	35	4		4	AP3D1	19	2111839	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	693349	2111839	57017144	876	112078											
THOP1	7064	broad.mit.edu	37	chr19	2796238	2796238	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcaatggtcgatcccgggGagtgctgggcacagggagtg	20	8	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2796238	T	T	2796238	1	4	118	0	1	0	0	0	0	0	0	0	15994	1189	41	3		3	THOP1	19	2796238	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	684399	2796238	56332745	877	112079											
MATK	4145	broad.mit.edu	37	chr19	3778978	3778978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccccaggggtatgtgaaGgcagggctcaccccgtgttt	14	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3778978	T	T	3778978	1	4	118	0	1	0	0	0	0	0	0	0	9424	1015	35	2		2	MATK	19	3778978	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	982740	3778978	55350005	878	112080											
CD209	30835	broad.mit.edu	37	chr19	7811983	7811983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcttcaacttctacctccCcagaacccaggagtcttggc	8	15	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7811983	A	A	7811983	1	1	118	0	1	0	0	0	0	0	0	0	3014	638	22	2		2	CD209	19	7811983	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4033005	7811983	51317000	879	112081											
MUC16	94025	broad.mit.edu	37	chr19	8962054	8962054	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggagacaagggctggggtGagccacctcctgccacgtcc	16	13	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8962054	C	C	8962054	1	2	118	0	1	0	0	0	0	0	0	0	10067	1305	45	4		4	MUC16	19	8962054	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1150071	8962054	50166929	880	112082											
MUC16	94025	broad.mit.edu	37	chr19	9010879	9010879	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccttcccagctcctttgctCatgaggaggacttatgggtt	11	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9010879	G	G	9010879	1	3	118	0	1	0	0	0	0	0	0	0	10067	841	29	4		4	MUC16	19	9010879	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	48825	9010879	50118104	881	112083											
MUC16	94025	broad.mit.edu	37	chr19	9024556	9024556	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggtgggggaccaaatGgaggtcaatgctaccctggt	17	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9024556	A	A	9024556	1	1	118	0	1	0	0	0	0	0	0	0	10067	1363	47	4		4	MUC16	19	9024556	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	13677	9024556	50104427	882	112084											
MUC16	94025	broad.mit.edu	37	chr19	9065905	9065905	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccacattggacgctgctgTgtttgtggaaggatgcacag	13	9	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9065905	A	A	9065905	3	1	118	1	0	0	0	0	1	0	0	0	10067	1696	59	5	22310	5	MUC16	19	9065905	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	41349	9065905	50063078	883	112085											
MUC16	94025	broad.mit.edu	37	chr19	9071876	9071876	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactggtctctctcagtctAggagtcaagaaatatgttgg	11	7	4	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9071876	G	G	9071876	2	3	118	1	0	0	0	0	0	0	0	1	10067	407	15	5		5	MUC16	19	9071876	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	5971	9071876	50057107	884	112086											
RTBDN	83546	broad.mit.edu	37	chr19	12939862	12939862	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggacaggggagacaacaAttacatcaatcctcacaaac	7	12	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12939862	G	G	12939862	1	3	118	0	1	0	0	0	0	0	0	0	13828	116	4	5		5	RTBDN	19	12939862	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	3867986	12939862	46189121	885	112087											
CACNA1A	773	broad.mit.edu	37	chr19	13386557	13386557	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccacgtccccggagcccAcacaccccatccctagaccc	5	24	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13386557	T	T	13386557	1	4	118	0	1	0	0	0	0	0	0	0	2564	174	6	5		5	CACNA1A	19	13386557	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	446695	13386557	45742426	886	112088											
CYP4F11	57834	broad.mit.edu	37	chr19	16025585	16025585	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcacctttggggatgacGcggccgtctgggagcacaaa	15	10	1	2	rs140718122		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16025585	T	T	16025585	2	4	118	1	0	0	0	0	0	0	0	1	4219	1074	38	3		3	CYP4F11	19	16025585	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	2639028	16025585	43103398	887	112089											
CHERP	10523	broad.mit.edu	37	chr19	16652923	16652923	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccgggggactcggcgccCcagcccccgtccgccttgcc	13	20	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16652923	T	T	16652923	1	4	118	0	1	0	0	0	0	0	0	0	3367	638	22	4		4	CHERP	19	16652923	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	627338	16652923	42476060	888	112090											
MAST3	23031	broad.mit.edu	37	chr19	18255563	18255563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattttcaccaacagggtgGgggcccttcctgagttgggg	14	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18255563	T	T	18255563	1	4	118	0	1	0	0	0	0	0	0	0	9418	1247	43	2		2	MAST3	19	18255563	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1602640	18255563	40873420	889	112091											
UPF1	5976	broad.mit.edu	37	chr19	18968170	18968170	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccagctgggcccagtggtGatgtgcaagaaggcggccaa	16	10	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18968170	C	C	18968170	2	2	118	1	0	0	0	0	0	0	0	1	17129	1277	45	4		4	UPF1	19	18968170	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	712607	18968170	40160813	890	112092											
NDUFA13	51079	broad.mit.edu	37	chr19	19638158	19638159	+	Missense_Mutation	DNP	GG	TT	TT													gttacaggcagaaaccgaccGgaggtagcaccgcaggggcc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	19638159	TT	TT	19638158	3	4	118	1	0	0	0	0	1	0	0	0	10358	1116	39	1	252	1	NDUFA13	19	19638158	Missense_Mutation	DNP	GG	TCGA-44-4112-01A-01D-1458-08	669988	19638158	39490825	891	112093											
ZNF90	7643	broad.mit.edu	37	chr19	20191165	20191165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacaggagaaattccccCgtccagcctcagggcaccgt	10	16	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20191165	A	A	20191165	1	1	118	0	1	0	0	0	0	0	0	0	18328	667	23	1		1	ZNF90	19	20191165	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	553007	20191165	38937818	892	112094											
ZNF257	113835	broad.mit.edu	37	chr19	22235505	22235505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacctgtgggaagtcgctGtggcgggactcaggcctcct	16	11	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22235505	T	T	22235505	1	4	118	0	1	0	0	0	0	0	0	0	17926	1392	48	3		3	ZNF257	19	22235505	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	2044340	22235505	36893478	893	112095											
ANKRD27	84079	broad.mit.edu	37	chr19	33096661	33096661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcctctccatccccagTgcgctgcgggggtcgctggg	16	16	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33096661	A	A	33096661	1	1	118	0	1	0	0	0	0	0	0	0	655	1711	59	5		5	ANKRD27	19	33096661	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	10861156	33096661	26032322	894	112096											
GPATCH1	55094	broad.mit.edu	37	chr19	33588796	33588796	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacagcacccaggcagtatAaaaaccagaaaggtaattcg	10	9	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33588796	G	G	33588796	3	3	118	1	0	0	0	0	1	0	0	0	6655	363	13	5	1018	5	GPATCH1	19	33588796	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	492135	33588796	25540187	895	112097											
DMKN	93099	broad.mit.edu	37	chr19	35993175	35993175	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggattccagatctcgggTaggaaggagcttttgggtgt	18	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35993175	A	A	35993175	1	1	118	0	1	0	0	0	0	0	0	0	4622	1653	57	5		5	DMKN	19	35993175	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2404379	35993175	23135808	896	112098											
ATP4A	495	broad.mit.edu	37	chr19	36051554	36051554	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagttgaggtggacgggGgtgggggtgggagctgctgc	22	6	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36051554	A	A	36051554	1	1	118	0	1	0	0	0	0	0	0	0	1149	1247	43	4		4	ATP4A	19	36051554	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	58379	36051554	23077429	897	112099											
RBM42	79171	broad.mit.edu	37	chr19	36120654	36120654	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgtgtacagagagctgttGacgttttggcttgttgacta	12	5	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36120654	T	T	36120654	1	4	118	0	1	0	0	0	0	0	0	0	13244	1305	45	3		3	RBM42	19	36120654	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	69100	36120654	23008329	898	112100											
LRFN3	79414	broad.mit.edu	37	chr19	36430769	36430769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagctggcagcgctggcgGccggcgccctggatgattgt	16	13	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36430769	T	T	36430769	3	4	118	1	0	0	0	0	1	0	0	0	9026	1203	42	3	444	3	LRFN3	19	36430769	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	310115	36430769	22698214	899	112101											
SIPA1L3	23094	broad.mit.edu	37	chr19	38632089	38632089	+	Intron	DEL	G	-	-													gcaagaggtaagcacctgctGgggggaccaatacttcccaa							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38632089	-	-	38632089	6	5	118	0	1	1	0	1	0	0	0	0	14444	1363	47	0		0	SIPA1L3	19	38632089	Intron	DEL	G	TCGA-44-4112-01A-01D-1458-08	2201320	38632089	20496894	900	112102											
RYR1	6261	broad.mit.edu	37	chr19	38939385	38939385	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcgtgcagcatgtggccTcaggactgtggctcacctat	12	12	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38939385	G	G	38939385	3	3	118	1	0	0	0	0	1	0	0	0	13879	1551	54	5	1096	5	RYR1	19	38939385	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	307296	38939385	20189598	901	112103											
RYR1	6261	broad.mit.edu	37	chr19	38942547	38942547	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcaacctgccctccctgCtggggtgactcctgtgctgt	12	14	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38942547	T	T	38942547	1	4	118	0	1	0	0	0	0	0	0	0	13879	812	28	4		4	RYR1	19	38942547	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3162	38942547	20186436	902	112104											
DYRK1B	9149	broad.mit.edu	37	chr19	40316982	40316982	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgagagaaggtggcgagTgggttttgggatggctgagg	22	2	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40316982	A	A	40316982	1	1	118	0	1	0	0	0	0	0	0	0	4895	1711	59	5		5	DYRK1B	19	40316982	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1374435	40316982	18812001	903	112105											
ZNF780B	163131	broad.mit.edu	37	chr19	40541382	40541382	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtatgaatttggcaatgttGaataagttggtaatgatatc	10	2	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40541382	C	C	40541382	3	2	118	1	0	0	0	0	1	0	0	0	18282	1299	45	4	1121	4	ZNF780B	19	40541382	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	224400	40541382	18587601	904	112106											
ATP1A3	478	broad.mit.edu	37	chr19	42482016	42482016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagtgcagagggaggttGgggggaagcggtccccctgt	20	8	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42482016	T	T	42482016	1	4	118	0	1	0	0	0	0	0	0	0	1134	1363	47	2		2	ATP1A3	19	42482016	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	1940634	42482016	16646967	905	112107											
PSG1	5669	broad.mit.edu	37	chr19	43380658	43380658	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatctctaaagaggttttgGatcattcatttcttcattcc	5	9	5	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43380658	T	T	43380658	1	4	118	0	1	0	0	0	0	0	0	0	12759	1189	41	3		3	PSG1	19	43380658	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	898642	43380658	15748325	906	112108											
PSG6	5675	broad.mit.edu	37	chr19	43429742	43429742	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggaatgttatgaagatatCagcctgtttgttaaagtttt	10	3	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43429742	A	A	43429742	1	1	118	0	1	0	0	0	0	0	0	0	12765	841	29	3		3	PSG6	19	43429742	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	49084	43429742	15699241	907	112109											
PSG6	5675	broad.mit.edu	37	chr19	43433928	43433928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctttgactcctccaaaGgcatttttcaatcagagttg	7	11	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43433928	T	T	43433928	1	4	118	0	1	0	0	0	0	0	0	0	12765	1015	35	2		2	PSG6	19	43433928	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4186	43433928	15695055	908	112110											
PSG9	5678	broad.mit.edu	37	chr19	43770537	43770537	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctaaagaggttttggatcAttcatttcttcattcaagtt	6	7	6	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43770537	G	G	43770537	1	3	118	0	1	0	0	0	0	0	0	0	12768	232	8	5		5	PSG9	19	43770537	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	336609	43770537	15358446	909	112111											
EML2	24139	broad.mit.edu	37	chr19	46112818	46112819	+	3'UTR	DNP	CC	AG	AG													ccctcccgcccccataacccCctctgctatagacatactct							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	46112819	AG	AG	46112818	1	1	118	0	1	0	0	0	0	0	0	0	5139	638	22	2		2	EML2	19	46112818	3'UTR	DNP	CC	TCGA-44-4112-01A-01D-1458-08	2342281	46112818	13016165	910	112112											
PPP5C	5536	broad.mit.edu	37	chr19	46878954	46878954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctttgagcgggccatcGcgggcgacgagcacaagcgc	16	13	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46878954	T	T	46878954	3	4	118	1	0	0	0	0	1	0	0	0	12507	1087	38	3	467	3	PPP5C	19	46878954	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	766136	46878954	12250029	911	112113											
CCDC8	83987	broad.mit.edu	37	chr19	46914764	46914764	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagcctctgccctctggCcagcccgggcctgtgccctc	12	19	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46914764	G	G	46914764	3	3	118	1	0	0	0	0	1	0	0	0	2881	739	26	4	316	4	CCDC8	19	46914764	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	35810	46914764	12214219	912	112114											
ELSPBP1	64100	broad.mit.edu	37	chr19	48519237	48519237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttcttaggcagtctgtGgtgctcagtcacctctgtct	10	12	6	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48519237	T	T	48519237	3	4	118	1	0	0	0	0	1	0	0	0	5125	1357	47	2	306	2	ELSPBP1	19	48519237	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1604473	48519237	10609746	913	112115											
LIG1	3978	broad.mit.edu	37	chr19	48639211	48639211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcccgctggggaaggggcGggcatgggcctctgaagagg	22	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48639211	A	A	48639211	1	1	118	0	1	0	0	0	0	0	0	0	8853	1131	39	4		4	LIG1	19	48639211	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	119974	48639211	10489772	914	112116											
ZNF114	163071	broad.mit.edu	37	chr19	48790040	48790040	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagccacactggagagaaaCcctataaatgtaagacatgt	10	8	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48790040	T	T	48790040	3	4	118	1	0	0	0	0	1	0	0	0	17842	507	18	4	1169	4	ZNF114	19	48790040	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	150829	48790040	10338943	915	112117											
CA11	770	broad.mit.edu	37	chr19	49142169	49142169	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcggtagttggggcctcGgcagcgcctctcggggtgcc	18	13	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49142169	T	T	49142169	2	4	118	1	0	0	0	0	0	0	0	1	2538	1124	39	1		1	CA11	19	49142169	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	352129	49142169	9986814	916	112118											
FUT1	2523	broad.mit.edu	37	chr19	49253722	49253722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacatcgccctgggaggtgtCgatgttttctttacaccact	9	12	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49253722	A	A	49253722	3	1	118	1	0	0	0	0	1	0	0	0	6161	884	31	3	284	3	FUT1	19	49253722	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	111553	49253722	9875261	917	112119											
CGB	1082	broad.mit.edu	37	chr19	49527128	49527129	+	Intron	DEL	CC	-	-													ctccagaaagaggcctccttCcacagctcacactggtctga					rs62126026	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49527129	-	-	49527128	6	5	118	0	1	1	0	1	0	0	0	0	3326	870	30	0		0	CGB	19	49527128	Intron	DEL	CC	TCGA-44-4112-01A-01D-1458-08	273406	49527128	9601855	918	112120											
C19orf41	126123	broad.mit.edu	37	chr19	50665946	50665946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagggaggtggggcagacCggcggaaagaagaggggtgc	21	6	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50665946	A	A	50665946	1	1	118	0	1	0	0	0	0	0	0	0	1943	667	23	1		1	C19orf41	19	50665946	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1138818	50665946	8463037	919	112121											
SHANK1	50944	broad.mit.edu	37	chr19	51169662	51169662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgggccaagggcccgGgcagaggtggtggcggtggg	24	8	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51169662	T	T	51169662	3	4	118	1	0	0	0	0	1	0	0	0	14377	1232	43	2	938	2	SHANK1	19	51169662	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	503716	51169662	7959321	920	112122											
KLK6	5653	broad.mit.edu	37	chr19	51462294	51462294	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatcaggaccctcacgtcGctgcgtttattaagcatcag	9	11	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51462294	A	A	51462294	1	1	118	0	1	0	0	0	0	0	0	0	8479	1102	38	4		4	KLK6	19	51462294	3'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	292632	51462294	7666689	921	112123											
C19orf75	284369	broad.mit.edu	37	chr19	51768891	51768891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacccatgctttgagcatcCtactgatgtcaagtgagggt	11	9	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51768891	A	A	51768891	3	1	118	1	0	0	0	0	1	0	0	0	1969	680	24	2	298	2	C19orf75	19	51768891	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	306597	51768891	7360092	922	112124											
C19orf75	284369	broad.mit.edu	37	chr19	51769159	51769159	+	Intron	SNP	A	C	C													gagtactagggttaatattcAcccgcaagcctactaccggg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51769159	C	C	51769159	1	2	118	0	1	0	0	0	0	0	0	0	1969	174	6	5		5	C19orf75	19	51769159	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	268	51769159	7359824	923	112125	490	2									
C19orf75	284369	broad.mit.edu	37	chr19	51769163	51769163	+	Intron	SNP	G	C	C													actagggttaatattcacccGcaagcctactaccgggcagg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51769163	C	C	51769163	1	2	118	0	1	0	0	0	0	0	0	0	1969	1102	38	4		4	C19orf75	19	51769163	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4	51769163	7359820	924	112126	490	2									
SIGLEC10	89790	broad.mit.edu	37	chr19	51918110	51918110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatggatccactctgggccCcatggacgttccaggcctca	12	14	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51918110	A	A	51918110	3	1	118	1	0	0	0	0	1	0	0	0	14419	623	22	2	526	2	SIGLEC10	19	51918110	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	148947	51918110	7210873	925	112127											
FPR2	2358	broad.mit.edu	37	chr19	52272906	52272906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgaggactcagccccaaCtaatgacacggctgccaatt	9	13	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52272906	A	A	52272906	3	1	118	1	0	0	0	0	1	0	0	0	6099	565	20	3	997	3	FPR2	19	52272906	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	354796	52272906	6856077	926	112128											
ZNF28	7576	broad.mit.edu	37	chr19	53311270	53311270	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcctcacccagggagacCaggttcctataattctccag	7	13	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53311270	A	A	53311270	2	1	118	1	0	0	0	0	0	0	0	1	17939	609	21	2		2	ZNF28	19	53311270	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	1038364	53311270	5817713	927	112129											
ZNF468	90333	broad.mit.edu	37	chr19	53352244	53352244	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcaaaatcaatatggcttCcattttagtcaaggaacaat	5	7	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53352244	A	A	53352244	1	1	118	0	1	0	0	0	0	0	0	0	18055	870	30	3		3	ZNF468	19	53352244	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	40974	53352244	5776739	928	112130											
ZNF415	55786	broad.mit.edu	37	chr19	53611537	53611537	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaattgtgactgaaaacCttgccacatttattatactt	6	7	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53611537	A	A	53611537	1	1	118	0	1	0	0	0	0	0	0	0	18019	696	24	2		2	ZNF415	19	53611537	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	259293	53611537	5517446	929	112131											
ZNF665	79788	broad.mit.edu	37	chr19	53686317	53686317	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatacacagggaagaccttaTacacagggaagatggtcctc	10	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53686317	A	A	53686317	1	1	118	0	1	0	0	0	0	0	0	0	18200	1421	49	5		5	ZNF665	19	53686317	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	74780	53686317	5442666	930	112132											
ZNF331	55422	broad.mit.edu	37	chr19	54072435	54072435	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgatactcttcacctttcCcagatatgtcacggttatgt	6	11	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54072435	A	A	54072435	1	1	118	0	1	0	0	0	0	0	0	0	17975	638	22	2		2	ZNF331	19	54072435	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	386118	54072435	5056548	931	112133											
DPRX	503834	broad.mit.edu	37	chr19	54135451	54135451	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtggaaagcagctggcggCgggaaaaggcagagggacca	18	7	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54135451	T	T	54135451	1	4	118	0	1	0	0	0	0	0	0	0	4778	783	27	4		4	DPRX	19	54135451	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	63016	54135451	4993532	932	112134											
NLRP12	91662	broad.mit.edu	37	chr19	54304481	54304481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagcaaaacgggactcacCgcagggtctggagcttgcac	14	11	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54304481	A	A	54304481	3	1	118	1	0	0	0	0	1	0	0	0	10569	666	23	1	445	1	NLRP12	19	54304481	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	169030	54304481	4824502	933	112135											
CACNG7	59284	broad.mit.edu	37	chr19	54445373	54445373	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacacccggccttctaccgCccgcgtctcagcgactgctc	8	21	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54445373	T	T	54445373	2	4	118	1	0	0	0	0	0	0	0	1	2588	726	26	4		4	CACNG7	19	54445373	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	140892	54445373	4683610	934	112136											
LILRB2	10288	broad.mit.edu	37	chr19	54779755	54779755	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagaagtcctgctggattaGatctggcaccaggaggcctt	13	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54779755	T	T	54779755	1	4	118	0	1	0	0	0	0	0	0	0	8863	957	33	3		3	LILRB2	19	54779755	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	334382	54779755	4349228	935	112137											
LILRA1	11024	broad.mit.edu	37	chr19	55107393	55107393	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcgaccccctggacatcctGatcgcaggtgaggagcccag	13	14	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55107393	C	C	55107393	2	2	118	1	0	0	0	0	0	0	0	1	8856	1277	45	4		4	LILRA1	19	55107393	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	327638	55107393	4021590	936	112138											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272294	55272294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaagacgaagcttgggtGtgagggagggatcagggcac	19	5	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55272294	T	T	55272294	1	4	118	0	1	0	0	0	0	0	0	0	8388	1392	48	3		3	KIR2DL3	19	55272294	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	164901	55272294	3856689	937	112139											
KIR2DL4	3805	broad.mit.edu	37	chr19	55325108	55325108	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgaggacccagaagtgCcctcccagctgttttgattg	11	10	0	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55325108	T	T	55325108	1	4	118	0	1	0	0	0	0	0	0	0	8389	754	26	4		4	KIR2DL4	19	55325108	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	52814	55325108	3803875	938	112140											
PTPRH	5794	broad.mit.edu	37	chr19	55693445	55693445	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacaaagctgaagggcccaAggagaccctcggactgcagc	12	12	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55693445	T	T	55693445	3	4	118	1	0	0	0	0	1	0	0	0	12911	72	3	5	218	5	PTPRH	19	55693445	Missense_Mutation	SNP	A	TCGA-44-4112-01A-01D-1458-08	368337	55693445	3435538	939	112141											
TMEM150B	284417	broad.mit.edu	37	chr19	55832247	55832247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatccagggatccaggccCccaaccccttcctccctcag	7	20	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55832247	A	A	55832247	1	1	118	0	1	0	0	0	0	0	0	0	16191	638	22	2		2	TMEM150B	19	55832247	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	138802	55832247	3296736	940	112142											
NLRP8	126205	broad.mit.edu	37	chr19	56459349	56459349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agttctcatattccgccctgGacattctcttgctaccccgg	7	15	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56459349	T	T	56459349	3	4	118	1	0	0	0	0	1	0	0	0	10578	1183	41	3	83	3	NLRP8	19	56459349	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	627102	56459349	2669634	941	112143											
ZNF835	90485	broad.mit.edu	37	chr19	57175089	57175089	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgtctgcatgcgtcctcTggtgtcggatgagcgcggag	15	10	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57175089	C	C	57175089	3	2	118	1	0	0	0	0	1	0	0	0	18315	1580	55	5	137	5	ZNF835	19	57175089	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	715740	57175089	1953894	942	112144											
ZNF835	90485	broad.mit.edu	37	chr19	57175250	57175250	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagggccgctcgcccgtgtgCgtgcgctggtgcagggcgag	19	12	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57175250	T	T	57175250	2	4	118	1	0	0	0	0	0	0	0	1	18315	755	27	4		4	ZNF835	19	57175250	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	161	57175250	1953733	943	112145											
USP29	57663	broad.mit.edu	37	chr19	57641790	57641790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgacaccatcaatgaagCtgacctcagaatccagtgat	7	11	2	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57641790	A	A	57641790	3	1	118	1	0	0	0	0	1	0	0	0	17186	796	28	3	1749	3	USP29	19	57641790	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	466540	57641790	1487193	944	112146											
ZNF264	9422	broad.mit.edu	37	chr19	57705360	57705360	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaactgtgggctcctgGtgtctctgggtaaggccttc	14	9	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57705360	A	A	57705360	3	1	118	1	0	0	0	0	1	0	0	0	17930	1261	44	4	157	4	ZNF264	19	57705360	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	63570	57705360	1423623	945	112147											
ZNF135	7694	broad.mit.edu	37	chr19	58579298	58579298	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcagagcacacacctcacCcaacaccagcgaatccacac	6	19	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58579298	A	A	58579298	2	1	118	1	0	0	0	0	0	0	0	1	17851	610	22	2		2	ZNF135	19	58579298	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	873938	58579298	549685	946	112148											
TGM6	343641	broad.mit.edu	37	chr20	2380910	2380910	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagccaggcccctctctcaGgggccagggtcccgcctgct	13	17	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2380910	C	C	2380910	1	2	118	0	1	0	0	0	0	0	0	0	15957	1015	35	4		4	TGM6	20	2380910	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08		2380910	60644610	947	112149											
TMC2	117532	broad.mit.edu	37	chr20	2597907	2597907	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcagcctcctgccggtGgcctacaccatcatgtccct	7	18	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2597907	A	A	2597907	2	1	118	1	0	0	0	0	0	0	0	1	16108	1335	47	4		4	TMC2	20	2597907	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	216997	2597907	60427613	948	112150											
OXT	5020	broad.mit.edu	37	chr20	3052311	3052311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacccgcaccatggccggcCccagcctcgcttgctgtctg	11	19	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3052311	A	A	3052311	3	1	118	1	0	0	0	0	1	0	0	0	11431	623	22	2	12	2	OXT	20	3052311	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	454404	3052311	59973209	949	112151											
FASTKD5	60493	broad.mit.edu	37	chr20	3128052	3128052	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttctaagaattcaggcttTgaattcatatccttctctgc	6	9	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3128052	A	A	3128052	2	1	118	1	0	0	0	0	0	0	0	1	5745	1799	63	5		5	FASTKD5	20	3128052	Silent	SNP	T	TCGA-44-4112-01A-01D-1458-08	75741	3128052	59897468	950	112152											
C20orf194	25943	broad.mit.edu	37	chr20	3234371	3234371	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacgctgttccaaggataCgtgggtgaaaatcagttttg	11	8	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3234371	A	A	3234371	5	1	118	1	0	0	0	0	0	0	1	0	2121	550	19	3	119	3	C20orf194	20	3234371	Splice_Site	SNP	C	TCGA-44-4112-01A-01D-1458-08	106319	3234371	59791149	951	112153											
ADAM33	80332	broad.mit.edu	37	chr20	3654111	3654111	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgatctcatgggccatggtGgctgcggcgccgatggggag	18	11	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3654111	T	T	3654111	2	4	118	1	0	0	0	0	0	0	0	1	250	1335	47	2		2	ADAM33	20	3654111	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	419740	3654111	59371409	952	112154											
CDC25B	994	broad.mit.edu	37	chr20	3781365	3781365	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcagccttcattcctctgCctgccgccctgcctggctct	8	18	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3781365	T	T	3781365	1	4	118	0	1	0	0	0	0	0	0	0	3093	754	26	4		4	CDC25B	20	3781365	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	127254	3781365	59244155	953	112155											
C20orf29	55317	broad.mit.edu	37	chr20	3803011	3803011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataggtattttcggggagtGgggacgcagagaaataggag	17	3	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3803011	T	T	3803011	1	4	118	0	1	0	0	0	0	0	0	0	2130	1363	47	2		2	C20orf29	20	3803011	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	21646	3803011	59222509	954	112156											
PANK2	80025	broad.mit.edu	37	chr20	3891140	3891140	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcactttcatggttgtttcAcgtagtggggatgccttatt	11	7	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3891140	T	T	3891140	1	4	118	0	1	0	0	0	0	0	0	0	11511	174	6	5		5	PANK2	20	3891140	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	88129	3891140	59134380	955	112157											
PLCB1	23236	broad.mit.edu	37	chr20	8709901	8709901	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcttacataattgggggaGagaaaattgccagacttcac	9	7	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8709901	T	T	8709901	1	4	118	0	1	0	0	0	0	0	0	0	12122	957	33	3		3	PLCB1	20	8709901	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4818761	8709901	54315619	956	112158											
PLCB1	23236	broad.mit.edu	37	chr20	8862495	8862495	+	Nonstop_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaatttgatactcctctgtGaatgctcctgccaggccttc	8	12	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8862495	C	C	8862495	4	2	118	1	0	0	0	0	0	0	0	0	12122	1285	45	4	3879	4	PLCB1	20	8862495	Nonstop_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	152594	8862495	54163025	957	112159											
PLCB4	5332	broad.mit.edu	37	chr20	9360852	9360852	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaaaaaaacaagaaaAgatgcaacttttaaagcctt	4	5	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9360852	T	T	9360852	1	4	118	0	1	0	0	0	0	0	0	0	12125	87	3	5		5	PLCB4	20	9360852	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	498357	9360852	53664668	958	112160											
PLCB4	5332	broad.mit.edu	37	chr20	9459462	9459462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccatattttgagtagcaaGgatgtggtgacaggatcata	12	5	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9459462	T	T	9459462	1	4	118	0	1	0	0	0	0	0	0	0	12125	1015	35	2		2	PLCB4	20	9459462	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	98610	9459462	53566058	959	112161											
C20orf12	55184	broad.mit.edu	37	chr20	18370989	18370989	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggaatgccaggctgaactCttcagagagactggctcctt	12	10	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18370989	G	G	18370989	1	3	118	0	1	0	0	0	0	0	0	0	2107	928	32	4		4	C20orf12	20	18370989	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	8911527	18370989	44654531	960	112162											
SLC24A3	57419	broad.mit.edu	37	chr20	19674054	19674054	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatcgcagccttctcctaCatgatggtgtggatggtgag	14	8	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19674054	A	A	19674054	4	1	118	1	0	0	0	0	0	1	0	0	14581	489	17	3	1526	3	SLC24A3	20	19674054	Nonsense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1303065	19674054	43351466	961	112163											
XRN2	22803	broad.mit.edu	37	chr20	21349293	21349293	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagcaaatgttggtttctAatcttctttgctgaaaaaga	7	7	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21349293	G	G	21349293	1	3	118	0	1	0	0	0	0	0	0	0	17587	377	13	5		5	XRN2	20	21349293	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	1675239	21349293	41676227	962	112164											
PAX1	5075	broad.mit.edu	37	chr20	21687763	21687763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaacctggggcgggcagGcttgcaggagaggactcaca	17	10	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21687763	T	T	21687763	1	4	118	0	1	0	0	0	0	0	0	0	11572	1218	42	3		3	PAX1	20	21687763	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	338470	21687763	41337757	963	112165											
PAX1	5075	broad.mit.edu	37	chr20	21689023	21689023	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgcctttcctccgcccCacccggagtggtgaacattc	10	16	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21689023	A	A	21689023	1	1	118	0	1	0	0	0	0	0	0	0	11572	609	21	2		2	PAX1	20	21689023	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	1260	21689023	41336497	964	112166											
TTLL9	164395	broad.mit.edu	37	chr20	30474942	30474942	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctgcagtaagttaacctGggaaaacagggcagatatac	10	7	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30474942	A	A	30474942	1	1	118	0	1	0	0	0	0	0	0	0	16860	1363	47	4		4	TTLL9	20	30474942	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	8785919	30474942	32550578	965	112167											
ITCH	83737	broad.mit.edu	37	chr20	33067498	33067498	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgcctgtttgaatatgcAgggaaggataactactgctt	10	6	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33067498	T	T	33067498	2	4	118	1	0	0	0	0	0	0	0	1	7938	175	7	5		5	ITCH	20	33067498	Silent	SNP	A	TCGA-44-4112-01A-01D-1458-08	2592556	33067498	29958022	966	112168											
NCOA6	23054	broad.mit.edu	37	chr20	33337075	33337075	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggcaagacagactatgagTtgataattattgaagcaggg	12	4	0	5			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33337075	A	A	33337075	1	1	118	0	1	0	0	0	0	0	0	0	10328	1740	60	5		5	NCOA6	20	33337075	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	269577	33337075	29688445	967	112169											
CHD6	84181	broad.mit.edu	37	chr20	40042045	40042045	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcttgctgggaatggatttCtcggcttggctgctggctgc	14	10	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40042045	T	T	40042045	2	4	118	1	0	0	0	0	0	0	0	1	3360	912	32	4		4	CHD6	20	40042045	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	6704970	40042045	22983475	968	112170											
TOX2	84969	broad.mit.edu	37	chr20	42695474	42695474	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcagctaccccagtggGgagtgtggcatcagcacctg	14	12	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42695474	T	T	42695474	2	4	118	1	0	0	0	0	0	0	0	1	16502	1219	43	2		2	TOX2	20	42695474	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	2653429	42695474	20330046	969	112171											
HNF4A	3172	broad.mit.edu	37	chr20	43034856	43034856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagcgtgcggaagaacCacatgtactcctgcaggtga	15	9	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43034856	A	A	43034856	3	1	118	1	0	0	0	0	1	0	0	0	7320	594	21	2	333	2	HNF4A	20	43034856	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	339382	43034856	19990664	970	112172											
ZNF335	63925	broad.mit.edu	37	chr20	44587938	44587938	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaagaaggggcgacggcGggaggggggctcctcagggt	22	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44587938	A	A	44587938	3	1	118	1	0	0	0	0	1	0	0	0	17978	1116	39	4	1929	4	ZNF335	20	44587938	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	1553082	44587938	18437582	971	112173											
MMP9	4318	broad.mit.edu	37	chr20	44639526	44639526	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaatctgcgcagcagtactCggctaaccctcttcctctcg	7	16	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44639526	T	T	44639526	1	4	118	0	1	0	0	0	0	0	0	0	9763	899	31	4		4	MMP9	20	44639526	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	51588	44639526	18385994	972	112174											
STAU1	6780	broad.mit.edu	37	chr20	47751649	47751649	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattcgtaacgttttatataGaagagagaagagcatgtctt	9	4	1	4			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47751649	C	C	47751649	1	2	118	0	1	0	0	0	0	0	0	0	15390	957	33	4		4	STAU1	20	47751649	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	3112123	47751649	15273871	973	112175											
NFATC2	4773	broad.mit.edu	37	chr20	50090455	50090455	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcccagaatacactgctccCgggggaagcccacgtgccct	11	17	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50090455	G	G	50090455	1	3	118	0	1	0	0	0	0	0	0	0	10457	667	23	4		4	NFATC2	20	50090455	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	2338806	50090455	12935065	974	112176											
ZFP64	55734	broad.mit.edu	37	chr20	50721311	50721311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagaagccaccttccaggCgcgcagccgaagcccagtgc	12	16	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50721311	A	A	50721311	1	1	118	0	1	0	0	0	0	0	0	0	17778	783	27	3		3	ZFP64	20	50721311	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	630856	50721311	12304209	975	112177											
SPO11	23626	broad.mit.edu	37	chr20	55910533	55910533	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcctttaagtgggaaaacTatttaaacttttggaatgtt	7	4	0	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55910533	A	A	55910533	1	1	118	0	1	0	0	0	0	0	0	0	15195	1537	53	5		5	SPO11	20	55910533	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	5189222	55910533	7114987	976	112178											
ZBP1	81030	broad.mit.edu	37	chr20	56195375	56195375	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacagcagctgcaaggagtcGgagagacttggcaggtgtgc	17	8	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56195375	C	C	56195375	1	2	118	0	1	0	0	0	0	0	0	0	17647	1131	39	4		4	ZBP1	20	56195375	5'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	284842	56195375	6830145	977	112179											
C20orf11	54994	broad.mit.edu	37	chr20	61576189	61576189	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctactactttgggctcagaaCgagctggaccagaagaaagt	11	9	1	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61576189	T	T	61576189	2	4	118	1	0	0	0	0	0	0	0	1	2101	535	19	4		4	C20orf11	20	61576189	Silent	SNP	C	TCGA-44-4112-01A-01D-1458-08	5380814	61576189	1449331	978	112180											
TPTE	7179	broad.mit.edu	37	chr21	10934906	10934906	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtaatctgttttctatctAcagtagcacaatatagagta	6	7	3	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10934906	T	T	10934906	1	4	118	0	1	0	0	0	0	0	0	0	16554	406	14	5		5	TPTE	21	10934906	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08		10934906	37194989	979	112181											
TPTE	7179	broad.mit.edu	37	chr21	10952843	10952843	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagggtgctgggattacaGgtgtgagccaccgtgcccag	15	12	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10952843	A	A	10952843	1	1	118	0	1	0	0	0	0	0	0	0	16554	1015	35	4		4	TPTE	21	10952843	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	17937	10952843	37177052	980	112182											
TPTE	7179	broad.mit.edu	37	chr21	10970037	10970037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggtgcctcctcggttgCtcctttaaattcacttgtct	8	13	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10970037	A	A	10970037	3	1	118	1	0	0	0	0	1	0	0	0	16554	797	28	3	1640	3	TPTE	21	10970037	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	17194	10970037	37159858	981	112183											
DOPEY2	9980	broad.mit.edu	37	chr21	37664514	37664514	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtcaggattctagaacttCtaaaattaaagtttggggta	9	5	3	1	rs34428315		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37664514	G	G	37664514	3	3	118	1	0	0	0	0	1	0	0	0	4748	912	32	4	6766	4	DOPEY2	21	37664514	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	26694477	37664514	10465381	982	112184											
POTEH	23784	broad.mit.edu	37	chr22	16287591	16287591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggcagcaccacttgcCcatcttgctcctgagtgtct	10	14	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287591	A	A	16287591	3	1	118	1	0	0	0	0	1	0	0	0	12363	623	22	2	1382	2	POTEH	22	16287591	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08		16287591	35016975	983	112185											
NEFH	4744	broad.mit.edu	37	chr22	29886353	29886353	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtccccaccccagagaaGgaggctcctgccaaggtgga	12	13	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29886353	A	A	29886353	2	1	118	1	0	0	0	0	0	0	0	1	10409	991	35	4		4	NEFH	22	29886353	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	13598762	29886353	21418213	984	112186											
SCUBE1	80274	broad.mit.edu	37	chr22	43658696	43658696	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcaggagacgcacgggaCgtttgacccatttgtctccc	12	12	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43658696	T	T	43658696	1	4	118	0	1	0	0	0	0	0	0	0	14057	551	19	4		4	SCUBE1	22	43658696	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	13772343	43658696	7645870	985	112187											
CSF2RA	1438	broad.mit.edu	37	chrX	1424515	1424515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgaccatcttgcttctcCaccagatgggaccgcagcgt	10	14	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1424515	A	A	1424515	1	1	118	0	1	0	0	0	0	0	0	0	3968	609	21	2		2	CSF2RA	23	1424515	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08		1424515	153846045	986	112188											
ARHGAP6	395	broad.mit.edu	37	chrX	11162553	11162553	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagggtttcaacgatatgAccagcagagggcagtaaaac	12	7	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11162553	C	C	11162553	1	2	118	0	1	0	0	0	0	0	0	0	889	290	10	5		5	ARHGAP6	23	11162553	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	9738038	11162553	144108007	987	112189											
FAM48B2	170067	broad.mit.edu	37	chrX	24331969	24331969	+	5'Flank	DEL	A	-	-													tctgaaaacatcggtacctgAggggtcgtcgtcgtggtcgg							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24331969	-	-	24331969	6	5	118	0	1	1	0	1	0	0	0	0	5625	319	11	0		0	FAM48B2	23	24331969	5'Flank	DEL	A	TCGA-44-4112-01A-01D-1458-08	13169416	24331969	130938591	988	112190											
DMD	1756	broad.mit.edu	37	chrX	32563220	32563220	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaccaccaacaaaactGctgtaaatgagttttctcca	4	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32563220	C	C	32563220	1	2	118	0	1	0	0	0	0	0	0	0	4620	1334	46	4		4	DMD	23	32563220	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	8231251	32563220	122707340	989	112191											
SHROOM4	57477	broad.mit.edu	37	chrX	50378792	50378792	+	Intron	DEL	G	-	-													gggtaggcaaaaaaaaaaaaGggggaagaaagggaaacagg					rs5915290	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50378792	-	-	50378792	6	5	118	0	1	1	0	1	0	0	0	0	14409	1015	35	0		0	SHROOM4	23	50378792	Intron	DEL	G	TCGA-44-4112-01A-01D-1458-08	17815572	50378792	104891768	990	112192											
ITIH5L	347365	broad.mit.edu	37	chrX	54776266	54776266	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctctgtccctggctcacCccatgccctggtttctggat	10	15	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54776266	T	T	54776266	1	4	118	0	1	0	0	0	0	0	0	0	7978	638	22	4		4	ITIH5L	23	54776266	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	4397474	54776266	100494294	991	112193											
TRO	7216	broad.mit.edu	37	chrX	54953208	54953208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgacctgggtggatgacGggcaaatggtcctgaactct	13	9	2	3			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54953208	T	T	54953208	1	4	118	0	1	0	0	0	0	0	0	0	16699	1131	39	1		1	TRO	23	54953208	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	176942	54953208	100317352	992	112194											
NONO	4841	broad.mit.edu	37	chrX	70514295	70514295	+	Frame_Shift_Del	DEL	A	-	-													gatcgaggaaggccctcaggAaaaggcattgttgagttctc							TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70514295	-	-	70514295	7	5	118	1	0	1	0	1	0	0	0	0	10629	233	9	0	577	0	NONO	23	70514295	Frame_Shift_Del	DEL	A	TCGA-44-4112-01A-01D-1458-08	15561087	70514295	84756265	993	112195											
CPXCR1	53336	broad.mit.edu	37	chrX	88008704	88008704	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctacttcagacccccattCccagaaaattggtctctcac	4	15	4	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88008704	G	G	88008704	3	3	118	1	0	0	0	0	1	0	0	0	3868	855	30	4	291	4	CPXCR1	23	88008704	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	17494409	88008704	67261856	994	112196											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177108	89177108	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccgctgcggacggcccGgctgagacccaaagcccggt	16	15	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177108	T	T	89177108	2	4	118	1	0	0	0	0	0	0	0	1	15950	1103	39	1		1	TGIF2LX	23	89177108	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	1168404	89177108	66093452	995	112197											
NXF2B	728343	broad.mit.edu	37	chrX	101615453	101615453	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcctggtcagccaggcCttaggctggtgaaaagagga	15	9	1	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101615453	A	A	101615453	1	1	118	0	1	0	0	0	0	0	0	0	10879	696	24	2		2	NXF2B	23	101615453	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	12438345	101615453	53655107	996	112198											
GLRA4	441509	broad.mit.edu	37	chrX	102968378	102968378	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggggtgggtcttggtttgTggggaggcggagtagggagg	24	3	1	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102968378	A	A	102968378	1	1	118	0	1	0	0	0	0	0	0	0	6521	1711	59	5		5	GLRA4	23	102968378	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	1352925	102968378	52302182	997	112199											
GLRA4	441509	broad.mit.edu	37	chrX	102976891	102976891	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgatttaactaacttcttaGaacctcagttttccctttct	3	10	3	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102976891	T	T	102976891	1	4	118	0	1	0	0	0	0	0	0	0	6521	957	33	3		3	GLRA4	23	102976891	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	8513	102976891	52293669	998	112200											
ATG4A	115201	broad.mit.edu	37	chrX	107393162	107393162	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttgggacttggactttgAggagatgtaaatgctagggc	14	4	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107393162	T	T	107393162	1	4	118	0	1	0	0	0	0	0	0	0	1100	319	11	5		5	ATG4A	23	107393162	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	4416271	107393162	47877398	999	112201											
COL4A5	1287	broad.mit.edu	37	chrX	107865154	107865154	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtttgctgccagacgtatgTgagagggaaaattaaatata	12	4	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107865154	A	A	107865154	1	1	118	0	1	0	0	0	0	0	0	0	3726	1711	59	5		5	COL4A5	23	107865154	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	471992	107865154	47405406	1000	112202											
DCX	1641	broad.mit.edu	37	chrX	110576256	110576256	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagagaacaatggagcaaTaaaacccagtggttatgctt	12	6	0	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110576256	A	A	110576256	1	1	118	0	1	0	0	0	0	0	0	0	4351	1421	49	5		5	DCX	23	110576256	Intron	SNP	T	TCGA-44-4112-01A-01D-1458-08	2711102	110576256	44694304	1001	112203											
HTR2C	3358	broad.mit.edu	37	chrX	113865532	113865532	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcccagcactttgggaggCcgaggcaggcagatcacaag	13	11	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113865532	G	G	113865532	1	3	118	0	1	0	0	0	0	0	0	0	7513	754	26	4		4	HTR2C	23	113865532	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	3289276	113865532	41405028	1002	112204											
DOCK11	139818	broad.mit.edu	37	chrX	117819891	117819891	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctcgacaccaaaattttCatgtgttccaacagggtgct	7	11	2	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117819891	T	T	117819891	1	4	118	0	1	0	0	0	0	0	0	0	4726	841	29	4		4	DOCK11	23	117819891	3'UTR	SNP	C	TCGA-44-4112-01A-01D-1458-08	3954359	117819891	37450669	1003	112205											
GRIA3	2892	broad.mit.edu	37	chrX	122616903	122616903	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttaagatctaggggtacgGttaaggtctagtaaactaat	11	4	2	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122616903	A	A	122616903	1	1	118	0	1	0	0	0	0	0	0	0	6835	1276	44	4		4	GRIA3	23	122616903	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	4797012	122616903	32653657	1004	112206											
ODZ1	10178	broad.mit.edu	37	chrX	124097430	124097430	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctctttctactctggctaTtgtaattcatcctcagctcc	4	14	5	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124097430	G	G	124097430	3	3	118	1	0	0	0	0	1	0	0	0	10929	1493	52	5	8153	5	ODZ1	23	124097430	Missense_Mutation	SNP	T	TCGA-44-4112-01A-01D-1458-08	1480527	124097430	31173130	1005	112207											
FRMD7	90167	broad.mit.edu	37	chrX	131228118	131228118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtacagttgtcactgcatgGaagccttcctagagccaaat	9	10	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131228118	T	T	131228118	3	4	118	1	0	0	0	0	1	0	0	0	6115	1174	41	3	1842	3	FRMD7	23	131228118	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	7130688	131228118	24042442	1006	112208											
FHL1	2273	broad.mit.edu	37	chrX	135291288	135291288	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaaagctaatcacttcattCctcatctcgcggccgcgatc	7	15	4	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135291288	T	T	135291288	1	4	118	0	1	0	0	0	0	0	0	0	5935	870	30	4		4	FHL1	23	135291288	Intron	SNP	C	TCGA-44-4112-01A-01D-1458-08	4063170	135291288	19979272	1007	112209											
MAGEC2	51438	broad.mit.edu	37	chrX	141293069	141293069	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattcccaagatggccgtcGggaaagcacatccgggaacc	12	12	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141293069	T	T	141293069	1	4	118	0	1	0	0	0	0	0	0	0	9273	1131	39	1		1	MAGEC2	23	141293069	5'UTR	SNP	G	TCGA-44-4112-01A-01D-1458-08	6001781	141293069	13977491	1008	112210											
PASD1	139135	broad.mit.edu	37	chrX	150780277	150780277	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattctggtttgttgtttagGggttcattatttattttctt	8	4	3	0			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150780277	A	A	150780277	1	1	118	0	1	0	0	0	0	0	0	0	11565	1247	43	4		4	PASD1	23	150780277	Intron	SNP	G	TCGA-44-4112-01A-01D-1458-08	9487208	150780277	4490283	1009	112211											
MAGEA10	4109	broad.mit.edu	37	chrX	151303881	151303881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagcagaaacctcctctGgggtgcttggtattagagga	12	9	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151303881	T	T	151303881	3	4	118	1	0	0	0	0	1	0	0	0	9252	1348	47	2	901	2	MAGEA10	23	151303881	Missense_Mutation	SNP	G	TCGA-44-4112-01A-01D-1458-08	523604	151303881	3966679	1010	112212											
L1CAM	3897	broad.mit.edu	37	chrX	153130579	153130579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtagccggtgagcacgcCgttgtggctgagtgggggct	18	10	0	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153130579	A	A	153130579	3	1	118	1	0	0	0	0	1	0	0	0	8660	652	23	1	969	1	L1CAM	23	153130579	Missense_Mutation	SNP	C	TCGA-44-4112-01A-01D-1458-08	1826698	153130579	2139981	1011	112213											
FLNA	2316	broad.mit.edu	37	chrX	153588257	153588257	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccacactgaactcagtggtGgcctcacggaagacacctgc	10	14	2	2			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153588257	C	C	153588257	2	2	118	1	0	0	0	0	0	0	0	1	5991	1335	47	4		4	FLNA	23	153588257	Silent	SNP	G	TCGA-44-4112-01A-01D-1458-08	457678	153588257	1682303	1012	112214											
TMLHE	55217	broad.mit.edu	37	chrX	154774606	154774606	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcattgcataacaatgtgaAttgtacacttaaaatggtta	6	5	1	1			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154774606	T	T	154774606	1	4	118	0	1	0	0	0	0	0	0	0	16355	116	4	5		5	TMLHE	23	154774606	Intron	SNP	A	TCGA-44-4112-01A-01D-1458-08	1186349	154774606	495954	1013	112215											
SKI	6497	broad.mit.edu	37	chr1	2234506	2234506	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgaaaaggacaagccgtcCagctggctgcggaccttggc	13	13	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2234506	T	T	2234506	2	4	119	1	0	0	0	0	0	0	0	1	14470	581	21	4		4	SKI	1	2234506	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08		2234506	247016115	1	112216											
TNFRSF8	943	broad.mit.edu	37	chr1	12186060	12186060	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtggtggtcggctccagCgccttcctcctgtgccaccg	13	15	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12186060	T	T	12186060	2	4	119	1	0	0	0	0	0	0	0	1	16422	767	27	4		4	TNFRSF8	1	12186060	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	9951554	12186060	237064561	2	112217											
NBPF1	55672	broad.mit.edu	37	chr1	16907299	16907299	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggattctctgtctacaaccAgagctgagttgactttgtct	9	9	3	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16907299	G	G	16907299	3	3	119	1	0	0	0	0	1	0	0	0	10286	188	7	5	1948	5	NBPF1	1	16907299	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	4721239	16907299	232343322	3	112218											
IL22RA1	58985	broad.mit.edu	37	chr1	24447964	24447964	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcaggggcagcgtttggGgcataggacagtggggagag	19	7	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24447964	A	A	24447964	2	1	119	1	0	0	0	0	0	0	0	1	7743	1219	43	4		4	IL22RA1	1	24447964	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	7540665	24447964	224802657	4	112219											
LEPR	3953	broad.mit.edu	37	chr1	66102281	66102281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggattctttctctaatagCtcatgggagatagaggccca	10	8	3	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66102281	A	A	66102281	3	1	119	1	0	0	0	0	1	0	0	0	8800	796	28	3	3381	3	LEPR	1	66102281	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	41654317	66102281	183148340	5	112220											
SLC44A5	204962	broad.mit.edu	37	chr1	75677082	75677082	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatccccaagccagctaagGacatgggccttcaccatctc	8	15	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75677082	T	T	75677082	1	4	119	0	1	0	0	0	0	0	0	0	14753	1189	41	3		3	SLC44A5	1	75677082	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	9574801	75677082	173573539	6	112221											
ABCA4	24	broad.mit.edu	37	chr1	94544956	94544956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcaaaggctttgccgccctCcaagcgattttggttaaagg	11	10	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94544956	A	A	94544956	3	1	119	1	0	0	0	0	1	0	0	0	34	856	30	3	5828	3	ABCA4	1	94544956	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	18867874	94544956	154705665	7	112222											
COL11A1	1301	broad.mit.edu	37	chr1	103461672	103461672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacatactataattttacCaactaatctacaaggatatg	3	7	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103461672	A	A	103461672	1	1	119	0	1	0	0	0	0	0	0	0	3699	609	21	2		2	COL11A1	1	103461672	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	8916716	103461672	145788949	8	112223											
COL11A1	1301	broad.mit.edu	37	chr1	103540213	103540213	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatccttgttccaaaaacCgtgattccattggtatcaac	5	10	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103540213	T	T	103540213	2	4	119	1	0	0	0	0	0	0	0	1	3699	639	23	4		4	COL11A1	1	103540213	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	78541	103540213	145710408	9	112224											
SLC25A24	29957	broad.mit.edu	37	chr1	108700189	108700189	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccattgtccggattttttTtcgtcttccgtgaattcatc	6	11	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108700189	C	C	108700189	2	2	119	1	0	0	0	0	0	0	0	1	14601	1838	64	5		5	SLC25A24	1	108700189	Silent	SNP	T	TCGA-44-5643-01A-01D-1625-08	5159976	108700189	140550432	10	112225											
NBPF10	100132406	broad.mit.edu	37	chr1	146397242	146397242	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtggaaatccctgtctagaCcctggtactggggagagttt	13	8	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146397242	G	G	146397242	1	3	119	0	1	0	0	0	0	0	0	0	10287	522	18	4		4	NBPF10	1	146397242	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	37697053	146397242	102853379	11	112226											
LOC200030	200030	broad.mit.edu	37	chr1	148252093	148252093	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtaagacttcaggctcttCcacttccatcagcacgccgt	7	15	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148252093	A	A	148252093	1	1	119	0	1	0	0	0	0	0	0	0	8950	870	30	3		3	LOC200030	1	148252093	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	1854851	148252093	100998528	12	112227											
OR10Z1	128368	broad.mit.edu	37	chr1	158576834	158576834	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagctgaggatctttatcctCagtcttttggtcctcttggt	10	9	4	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158576834	T	T	158576834	2	4	119	1	0	0	0	0	0	0	0	1	11017	813	29	4		4	OR10Z1	1	158576834	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	10324741	158576834	90673787	13	112228											
ADCY10	55811	broad.mit.edu	37	chr1	167873176	167873176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctccaccaactgctcagCccctctgtccatgtacatgg	7	16	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167873176	A	A	167873176	3	1	119	1	0	0	0	0	1	0	0	0	293	739	26	3	4754	3	ADCY10	1	167873176	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	9296342	167873176	81377445	14	112229											
TOR3A	64222	broad.mit.edu	37	chr1	179064160	179064160	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgattgactacttcatccCcttcctgcctttggagtacc	6	15	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179064160	G	G	179064160	3	3	119	1	0	0	0	0	1	0	0	0	16500	623	22	4	1023	4	TOR3A	1	179064160	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	11190984	179064160	70186461	15	112230											
CACNA1E	777	broad.mit.edu	37	chr1	181480759	181480759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaatctgtagagtaggggCagaagaaaaagttcaaggct	13	5	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181480759	A	A	181480759	1	1	119	0	1	0	0	0	0	0	0	0	2568	725	25	3		3	CACNA1E	1	181480759	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	2416599	181480759	67769862	16	112231											
FAM5C	339479	broad.mit.edu	37	chr1	190067324	190067324	+	Frame_Shift_Del	DEL	G	-	-													tggggagagtttatttacacGgtctctgatctctagtagtt							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	190067324	-	-	190067324	7	5	119	1	0	1	0	1	0	0	0	0	5645	1116	39	0	179	0	FAM5C	1	190067324	Frame_Shift_Del	DEL	G	TCGA-44-5643-01A-01D-1625-08	8586565	190067324	59183297	17	112232											
ASPM	259266	broad.mit.edu	37	chr1	197071942	197071942	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atatgctctacatcttacttGaataacaatagctgcttttc	4	9	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197071942	T	T	197071942	3	4	119	1	0	0	0	0	1	0	0	0	1060	1299	45	3	4038	3	ASPM	1	197071942	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	7004618	197071942	52178679	18	112233											
LAX1	54900	broad.mit.edu	37	chr1	203739874	203739874	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcccattccaaatcttcaGgctctaactccaaaaggaaa	5	13	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203739874	A	A	203739874	1	1	119	0	1	0	0	0	0	0	0	0	8720	1015	35	4		4	LAX1	1	203739874	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	6667932	203739874	45510747	19	112234											
PIGR	5284	broad.mit.edu	37	chr1	207108749	207108749	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatcagggtggaggcgggTgaaaaaggaggaagagtggt	19	5	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207108749	G	G	207108749	1	3	119	0	1	0	0	0	0	0	0	0	11992	1711	59	5		5	PIGR	1	207108749	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	3368875	207108749	42141872	20	112235											
TMEM63A	9725	broad.mit.edu	37	chr1	226037573	226037573	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggggatgcagggctgGgaggccaagggctggcccca	20	10	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226037573	A	A	226037573	1	1	119	0	1	0	0	0	0	0	0	0	16313	1247	43	4		4	TMEM63A	1	226037573	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	18928824	226037573	23213048	21	112236											
E2F6	1876	broad.mit.edu	37	chr2	11593783	11593783	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattggtgatgtcatacactCtccgctttcggactcccagt	8	13	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11593783	T	T	11593783	3	4	119	1	0	0	0	0	1	0	0	0	4911	913	32	4	560	4	E2F6	2	11593783	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08		11593783	231605590	22	112237											
GREB1	9687	broad.mit.edu	37	chr2	11750922	11750922	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgaagaactacacgtcGgtggagacgctggagatcac	13	9	1	5			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11750922	A	A	11750922	2	1	119	1	0	0	0	0	0	0	0	1	6826	1103	39	4		4	GREB1	2	11750922	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	157139	11750922	231448451	23	112238											
PUM2	23369	broad.mit.edu	37	chr2	20478332	20478332	+	Intron	DEL	T	-	-													acaaataaaaagggttttggTtttttttttacctaaatgca							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20478332	-	-	20478332	6	5	119	0	1	1	0	1	0	0	0	0	12934	1740	60	0		0	PUM2	2	20478332	Intron	DEL	T	TCGA-44-5643-01A-01D-1625-08	8727410	20478332	222721041	24	112239											
ITSN2	50618	broad.mit.edu	37	chr2	24533250	24533250	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgacccatgaggcaatgCtaaaaaagaaaaagaaggaa	10	5	0	5	rs75937204		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24533250	T	T	24533250	5	4	119	1	0	0	0	0	0	0	1	0	7997	811	28	4	4724	4	ITSN2	2	24533250	Splice_Site	SNP	C	TCGA-44-5643-01A-01D-1625-08	4054918	24533250	218666123	25	112240											
MRPL33	9553	broad.mit.edu	37	chr2	28002155	28002155	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcctgggatggaggaactGagtttgcaaatcagctccat	12	9	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28002155	T	T	28002155	1	4	119	0	1	0	0	0	0	0	0	0	9890	1305	45	3		3	MRPL33	2	28002155	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	3468905	28002155	215197218	26	112241											
WDR43	23160	broad.mit.edu	37	chr2	29150465	29150465	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgatgaattctgaagcaAaagttctggtgcctgggatt	12	6	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29150465	G	G	29150465	3	3	119	1	0	0	0	0	1	0	0	0	17422	15	1	5	1242	5	WDR43	2	29150465	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	1148310	29150465	214048908	27	112242											
CYP1B1	1545	broad.mit.edu	37	chr2	38302549	38302549	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgctggggacagagaggaGaaggcgtgacactcaggggt	18	7	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38302549	C	C	38302549	1	2	119	0	1	0	0	0	0	0	0	0	4184	957	33	4		4	CYP1B1	2	38302549	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	9152084	38302549	204896824	28	112243											
CNRIP1	25927	broad.mit.edu	37	chr2	68544214	68544214	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaccttttcttacagagaGatagtgattgttttcttttc	6	8	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68544214	A	A	68544214	1	1	119	0	1	0	0	0	0	0	0	0	3665	957	33	4		4	CNRIP1	2	68544214	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	30241665	68544214	174655159	29	112244											
PLEK	5341	broad.mit.edu	37	chr2	68609628	68609629	+	Intron	INS	-	T	T													tccccactcatccaactgggINStttttttttgtttgtttgtt							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68609629	T	T	68609628	6	5	119	0	1	1	1	0	0	0	0	0	12148	1276	44	0		0	PLEK	2	68609628	Intron	INS	-	TCGA-44-5643-01A-01D-1625-08	65414	68609628	174589745	30	112245											
REG3A	5068	broad.mit.edu	37	chr2	79384588	79384588	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagagaggagataagagaaGacacactaacattgtatttt	10	4	0	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384588	A	A	79384588	1	1	119	0	1	0	0	0	0	0	0	0	13320	957	33	4		4	REG3A	2	79384588	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	10774960	79384588	163814785	31	112246											
CTNNA2	1496	broad.mit.edu	37	chr2	80646672	80646673	+	Nonsense_Mutation	DNP	GG	AT	AT													gcaaagagcggaaatgaaaaGgaagtgaaagaatatgccca							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	80646673	AT	AT	80646672	4	1	119	1	0	0	0	0	0	1	0	0	4047	991	35	4	1058	4	CTNNA2	2	80646672	Nonsense_Mutation	DNP	GG	TCGA-44-5643-01A-01D-1625-08	1262084	80646672	162552701	32	112247											
REV1	51455	broad.mit.edu	37	chr2	100079155	100079155	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttttttgaaaaaaaaaaaTtttaaaaactaaataaataa	1	3	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100079155	A	A	100079155	1	1	119	0	1	0	0	0	0	0	0	0	13347	1508	52	5		5	REV1	2	100079155	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	19432483	100079155	143120218	33	112248											
DPP10	57628	broad.mit.edu	37	chr2	115200395	115200395	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcccatcacatcaagtgtCaaccctcaaaaacaatcaag	4	13	5	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115200395	T	T	115200395	4	4	119	1	0	0	0	0	0	1	0	0	4767	827	29	4	42	4	DPP10	2	115200395	Nonsense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	15121240	115200395	127998978	34	112249											
TFCP2L1	29842	broad.mit.edu	37	chr2	121989629	121989629	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccctgagaaagcagtaagTcctttgtcaaaatgccacac	8	12	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121989629	C	C	121989629	1	2	119	0	1	0	0	0	0	0	0	0	15919	1682	58	5		5	TFCP2L1	2	121989629	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	6789234	121989629	121209744	35	112250											
MYO7B	4648	broad.mit.edu	37	chr2	128394514	128394514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggttctttctcccatcCaagatgcataggacagagct	8	12	3	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128394514	T	T	128394514	1	4	119	0	1	0	0	0	0	0	0	0	10177	609	21	4		4	MYO7B	2	128394514	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	6404885	128394514	114804859	36	112251											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135894335	135894335	+	Intron	SNP	G	A	A													gaagggatattatgatacctGagacagttaactgatgggaa							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135894335	A	A	135894335	1	1	119	0	1	0	0	0	0	0	0	0	13043	1305	45	4		4	RAB3GAP1	2	135894335	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	7499821	135894335	107305038	37	112252	491	2									
RAB3GAP1	22930	broad.mit.edu	37	chr2	135894337	135894337	+	Intron	SNP	G	A	A													agggatattatgatacctgaGacagttaactgatgggaata							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135894337	A	A	135894337	1	1	119	0	1	0	0	0	0	0	0	0	13043	957	33	4		4	RAB3GAP1	2	135894337	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	2	135894337	107305036	38	112253	491	2									
LRP1B	53353	broad.mit.edu	37	chr2	141128895	141128895	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaattgagatagagtaaaaAtaacaggttttagaaataaa	8	1	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141128895	G	G	141128895	1	3	119	0	1	0	0	0	0	0	0	0	9042	116	4	5		5	LRP1B	2	141128895	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	5234558	141128895	102070478	39	112254											
GTDC1	79712	broad.mit.edu	37	chr2	144899585	144899585	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgagaaatgattccatatTaaaaactgagttgaatacaa	7	4	0	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144899585	A	A	144899585	3	1	119	1	0	0	0	0	1	0	0	0	6916	1754	61	5	1019	5	GTDC1	2	144899585	Missense_Mutation	SNP	T	TCGA-44-5643-01A-01D-1625-08	3770690	144899585	98299788	40	112255											
LY75	4065	broad.mit.edu	37	chr2	160636419	160636419	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccactgtgcctagccttattCtatttattgaggcacactta	6	11	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160636419	G	G	160636419	1	3	119	0	1	0	0	0	0	0	0	0	9187	928	32	4		4	LY75	2	160636419	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	15736834	160636419	82562954	41	112256			1	89		3	3	1059	C		5.180955e-05
LY75	4065	broad.mit.edu	37	chr2	160636571	160636571	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttcacaatttccttttttCcattcacctgtcttgatgtg	4	11	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160636571	T	T	160636571	4	4	119	1	0	0	0	0	0	1	0	0	9187	856	30	4		4	LY75	2	160636571	Nonsense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	152	160636571	82562802	42	112257			1	89		3	3	1059	C		5.180955e-05
LY75	4065	broad.mit.edu	37	chr2	160637477	160637477	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccagtataaaagcattttCttcttcattatgtatgctta	4	7	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160637477	G	G	160637477	3	3	119	1	0	0	0	0	1	0	0	0	9187	922	32	4		4	LY75	2	160637477	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	906	160637477	82561896	43	112258			1	89		3	3	1059	C		5.180955e-05
LRP2	4036	broad.mit.edu	37	chr2	170030461	170030461	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggctcatccgagtggtctCcacaatcattatccacatca	7	13	4	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170030461	G	G	170030461	3	3	119	1	0	0	0	0	1	0	0	0	9043	855	30	4	3081	4	LRP2	2	170030461	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	9392984	170030461	73168912	44	112259											
UBR3	130507	broad.mit.edu	37	chr2	170806648	170806648	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcttccttttggtcatttGaggataatcacctggatgtt	8	7	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170806648	C	C	170806648	1	2	119	0	1	0	0	0	0	0	0	0	17029	1305	45	4		4	UBR3	2	170806648	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	776187	170806648	72392725	45	112260											
UBR3	130507	broad.mit.edu	37	chr2	170851091	170851091	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtttattagaaaaaaAttaatatgtggatagaaaga	8	0	0	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170851091	C	C	170851091	1	2	119	0	1	0	0	0	0	0	0	0	17029	116	4	5		5	UBR3	2	170851091	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	44443	170851091	72348282	46	112261											
UBR3	130507	broad.mit.edu	37	chr2	170933891	170933891	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataacatccaaagttatatAcattgggaatgagggactct	8	6	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170933891	G	G	170933891	1	3	119	0	1	0	0	0	0	0	0	0	17029	406	14	5		5	UBR3	2	170933891	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	82800	170933891	72265482	47	112262											
TTN	7273	broad.mit.edu	37	chr2	179449635	179449635	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagggatgtgccatgacaggGagcaagcatcagcgtctata	14	8	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179449635	A	A	179449635	3	1	119	1	0	0	0	0	1	0	0	0	16861	1174	41	4	43458	4	TTN	2	179449635	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	8515744	179449635	63749738	48	112263											
INPP1	3628	broad.mit.edu	37	chr2	191235886	191235886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatgggactcttgtgctGctcatgccatactgagggcc	11	11	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191235886	T	T	191235886	3	4	119	1	0	0	0	0	1	0	0	0	7821	1319	46	3	976	3	INPP1	2	191235886	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	11786251	191235886	51963487	49	112264											
TRAK2	66008	broad.mit.edu	37	chr2	202277707	202277707	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaccaagcaatccctggaTtcttctaaagaatgctggac	7	11	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202277707	G	G	202277707	1	3	119	0	1	0	0	0	0	0	0	0	16574	1508	52	5		5	TRAK2	2	202277707	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	11041821	202277707	40921666	50	112265											
NBEAL1	65065	broad.mit.edu	37	chr2	204030957	204030957	+	Frame_Shift_Del	DEL	G	-	-													caataattgatgtaattcctGgcagattagaaatcactact							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	204030957	-	-	204030957	7	5	119	1	0	1	0	1	0	0	0	0	10282	1348	47	0	5851	0	NBEAL1	2	204030957	Frame_Shift_Del	DEL	G	TCGA-44-5643-01A-01D-1625-08	1753250	204030957	39168416	51	112266											
ADAM23	8745	broad.mit.edu	37	chr2	207406809	207406809	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttactaccatggaagcatcAgaggcgtcaaagactccaag	10	10	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207406809	G	G	207406809	3	3	119	1	0	0	0	0	1	0	0	0	245	180	7	5	625	5	ADAM23	2	207406809	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	3375852	207406809	35792564	52	112267											
MDH1B	130752	broad.mit.edu	37	chr2	207605623	207605623	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaagttgacatttttAtgcccatttcaaagtgtttg	6	5	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207605623	G	G	207605623	1	3	119	0	1	0	0	0	0	0	0	0	9502	464	16	5		5	MDH1B	2	207605623	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	198814	207605623	35593750	53	112268											
MARCH4	57574	broad.mit.edu	37	chr2	217142512	217142512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagccaagaaatactggCgatgaggaagagggagccca	15	7	0	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217142512	A	A	217142512	3	1	119	1	0	0	0	0	1	0	0	0	9395	768	27	3	492	3	MARCH4	2	217142512	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	9536889	217142512	26056861	54	112269											
CCDC108	255101	broad.mit.edu	37	chr2	219900114	219900114	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatggcatgttaaaggtttTttttgtttgttttgttttgt	9	1	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219900114	G	G	219900114	1	3	119	0	1	0	0	0	0	0	0	0	2769	1838	64	5		5	CCDC108	2	219900114	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	2757602	219900114	23299259	55	112270											
IRS1	3667	broad.mit.edu	37	chr2	227663232	227663232	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgttcttggagtcagcccGcttgttgatgttgaagcagc	12	9	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227663232	A	A	227663232	3	1	119	1	0	0	0	0	1	0	0	0	7910	1086	38	4	3509	4	IRS1	2	227663232	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	7763118	227663232	15536141	56	112271											
IQCA1	79781	broad.mit.edu	37	chr2	237317257	237317257	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgacttggcagtgcttcttCatgctgctgaagtcctgctc	10	11	2	2	rs75931791	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237317257	T	T	237317257	1	4	119	0	1	0	0	0	0	0	0	0	7872	841	29	4		4	IQCA1	2	237317257	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	9654025	237317257	5882116	57	112272											
THAP4	51078	broad.mit.edu	37	chr2	242572493	242572493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgctcccgcaggcagCacacctggctcttgttctgc	9	18	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242572493	A	A	242572493	3	1	119	1	0	0	0	0	1	0	0	0	15969	710	25	3	682	3	THAP4	2	242572493	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	5255236	242572493	626880	58	112273											
GAL3ST2	64090	broad.mit.edu	37	chr2	242742902	242742902	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctggacgcgttcctggcctCgccgcggacgttctacaacg	12	16	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242742902	T	T	242742902	3	4	119	1	0	0	0	0	1	0	0	0	6260	893	31	4	532	4	GAL3ST2	2	242742902	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	170409	242742902	456471	59	112274											
MTMR14	64419	broad.mit.edu	37	chr3	9726654	9726654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggttcctcttcgggtaagCctttgcaggagttgggtttt	13	8	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9726654	A	A	9726654	1	1	119	0	1	0	0	0	0	0	0	0	10036	754	26	3		3	MTMR14	3	9726654	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08		9726654	188295776	60	112275											
ZNF662	389114	broad.mit.edu	37	chr3	42956829	42956829	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctataactgtcagatctctCaccttcttgaacattagaga	5	11	4	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42956829	T	T	42956829	3	4	119	1	0	0	0	0	1	0	0	0	18198	826	29	4	1465	4	ZNF662	3	42956829	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	33230175	42956829	155065601	61	112276											
KIF9	64147	broad.mit.edu	37	chr3	47289496	47289496	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgccctccttctttgcctCtagcctcttaccaggctgtc	6	17	4	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47289496	G	G	47289496	1	3	119	0	1	0	0	0	0	0	0	0	8380	928	32	4		4	KIF9	3	47289496	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	4332667	47289496	150732934	62	112277											
ARIH2	10425	broad.mit.edu	37	chr3	49020264	49020264	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgcatgtgcccaccccCgtgtacaggccctgccccag	11	18	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49020264	T	T	49020264	1	4	119	0	1	0	0	0	0	0	0	0	926	667	23	4		4	ARIH2	3	49020264	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	1730768	49020264	149002166	63	112278											
TRAT1	50852	broad.mit.edu	37	chr3	108565883	108565883	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattatgtgaaaagtggaatCtaataaggtaaattattttt	7	1	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108565883	T	T	108565883	1	4	119	0	1	0	0	0	0	0	0	0	16590	928	32	4		4	TRAT1	3	108565883	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	59545619	108565883	89456547	64	112279											
ZNF80	7634	broad.mit.edu	37	chr3	113955906	113955906	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcacctgtccccaacccatCgcgtttagggctcatcttcc	6	17	3	0	rs150485238	byFrequency	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113955906	T	T	113955906	3	4	119	1	0	0	0	0	1	0	0	0	18297	884	31	4	809	4	ZNF80	3	113955906	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	5390023	113955906	84066524	65	112280											
IQCB1	9657	broad.mit.edu	37	chr3	121547297	121547297	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacatccctcaagaacagctGacttactgctttattttacc	4	12	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121547297	A	A	121547297	1	1	119	0	1	0	0	0	0	0	0	0	7873	1305	45	4		4	IQCB1	3	121547297	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	7591391	121547297	76475133	66	112281											
UROC1	131669	broad.mit.edu	37	chr3	126219701	126219701	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcccccgtcgtgtccaattCgtggaccaggcgctccctgg	11	17	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126219701	T	T	126219701	3	4	119	1	0	0	0	0	1	0	0	0	17154	893	31	4	1088	4	UROC1	3	126219701	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	4672404	126219701	71802729	67	112282											
STAG1	10274	broad.mit.edu	37	chr3	136221648	136221648	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgaagaaatattataataCctatgaatcaaaactttatc	3	5	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136221648	T	T	136221648	1	4	119	0	1	0	0	0	0	0	0	0	15360	522	18	4		4	STAG1	3	136221648	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	10001947	136221648	61800782	68	112283											
ZIC4	84107	broad.mit.edu	37	chr3	147114065	147114065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcggcagctgccagggCgtcgctgcgggccgcaggcc	19	15	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147114065	A	A	147114065	3	1	119	1	0	0	0	0	1	0	0	0	17807	768	27	3	754	3	ZIC4	3	147114065	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	10892417	147114065	50908365	69	112284											
SI	6476	broad.mit.edu	37	chr3	164735446	164735446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaataagctggcatgaCtggatggccaattaccttta	9	10	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164735446	A	A	164735446	3	1	119	1	0	0	0	0	1	0	0	0	14410	565	20	3	1906	3	SI	3	164735446	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	17621381	164735446	33286984	70	112285											
ARPM1	84517	broad.mit.edu	37	chr3	169487268	169487268	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgcccgccttgatcattcccGagccgttgtcgatcaccacc	8	18	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169487268	C	C	169487268	3	2	119	1	0	0	0	0	1	0	0	0	980	1059	37	4	1085	4	ARPM1	3	169487268	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	4751822	169487268	28535162	71	112286											
PIK3CA	5290	broad.mit.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4	rs104886003		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178936091	A	A	178936091	3	1	119	1	0	0	0	0	1	0	0	0	12008	1291	45	4	1667	4	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	9448823	178936091	19086339	72	112287											
EIF4G1	1981	broad.mit.edu	37	chr3	184034675	184034675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtgatgcatgttagggGctacatcttgaagaacgcgc	13	9	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184034675	T	T	184034675	1	4	119	0	1	0	0	0	0	0	0	0	5078	1218	42	3		3	EIF4G1	3	184034675	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	5098584	184034675	13987755	73	112288											
KIAA0226	9711	broad.mit.edu	37	chr3	197444857	197444857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gttctgcatacctggtcacgGataagcccgtgatagaggat	12	9	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197444857	C	C	197444857	3	2	119	1	0	0	0	0	1	0	0	0	8232	1164	41	4	2833	4	KIAA0226	3	197444857	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	13410182	197444857	577573	74	112289											
ZNF595	152687	broad.mit.edu	37	chr4	64984	64984	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgggaaggaccacttttgGactatagctgaaggagtttg	14	5	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64984	T	T	64984	1	4	119	0	1	0	0	0	0	0	0	0	18152	1189	41	3		3	ZNF595	4	64984	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08		64984	191089292	75	112290											
DGKQ	1609	broad.mit.edu	37	chr4	955735	955735	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggacctgagggaggtatgCcgttgacaggtggtagcccc	18	9	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	955735	T	T	955735	1	4	119	0	1	0	0	0	0	0	0	0	4513	754	26	4		4	DGKQ	4	955735	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	890751	955735	190198541	76	112291											
RGS12	6002	broad.mit.edu	37	chr4	3319836	3319836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcacttagcagtcacGgggaggtgactcccagtcac	10	15	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3319836	T	T	3319836	1	4	119	0	1	0	0	0	0	0	0	0	13404	1131	39	1		1	RGS12	4	3319836	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	2364101	3319836	187834440	77	112292											
OTOP1	133060	broad.mit.edu	37	chr4	4190721	4190721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaagagaagagaaaatgGcatgtggtggggagcagctt	16	5	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4190721	T	T	4190721	1	4	119	0	1	0	0	0	0	0	0	0	11399	1218	42	3		3	OTOP1	4	4190721	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	870885	4190721	186963555	78	112293											
SLIT2	9353	broad.mit.edu	37	chr4	20568974	20568974	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgtaatagtgatccagttGacttttaccgatgcacctgt	8	9	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20568974	T	T	20568974	3	4	119	1	0	0	0	0	1	0	0	0	14854	1290	45	3	2921	3	SLIT2	4	20568974	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	16378253	20568974	170585302	79	112294											
PPARGC1A	10891	broad.mit.edu	37	chr4	23831055	23831055	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaaaatcctttggtacatCccccctgtattaaaaaattt	4	11	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23831055	T	T	23831055	1	4	119	0	1	0	0	0	0	0	0	0	12396	870	30	4		4	PPARGC1A	4	23831055	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	3262081	23831055	167323221	80	112295											
LRRC66	339977	broad.mit.edu	37	chr4	52861875	52861875	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggcgcagatgggtctctGggtgtggtgtgtgccccgca	17	10	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52861875	A	A	52861875	3	1	119	1	0	0	0	0	1	0	0	0	9105	1348	47	4	1333	4	LRRC66	4	52861875	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	29030820	52861875	138292401	81	112296											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68788685	68788685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagttataagaaacatcttGtaattacaggaaatgacccc	6	7	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68788685	T	T	68788685	1	4	119	0	1	0	0	0	0	0	0	0	16362	1392	48	3		3	TMPRSS11A	4	68788685	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	15926810	68788685	122365591	82	112297											
ABCG2	9429	broad.mit.edu	37	chr4	89052431	89052431	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctaagaccatgactgttTagtatacataacataatcca	4	8	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89052431	C	C	89052431	1	2	119	0	1	0	0	0	0	0	0	0	69	1769	61	5		5	ABCG2	4	89052431	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	20263746	89052431	102101845	83	112298											
PPP3CA	5530	broad.mit.edu	37	chr4	101947155	101947155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcggcatcctctcattaattCggtctaagcccttggcttcc	8	14	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101947155	A	A	101947155	3	1	119	1	0	0	0	0	1	0	0	0	12498	884	31	3	136	3	PPP3CA	4	101947155	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	12894724	101947155	89207121	84	112299											
ALPK1	80216	broad.mit.edu	37	chr4	113348782	113348782	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtttccatgagcaagaaCgattatgaaaagtttaaaaa	7	4	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113348782	T	T	113348782	2	4	119	1	0	0	0	0	0	0	0	1	544	535	19	4		4	ALPK1	4	113348782	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	11401627	113348782	77805494	85	112300											
KIAA0922	23240	broad.mit.edu	37	chr4	154505955	154505955	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgaaagaaaaggtacttAagcttcacatttatttcttt	5	5	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154505955	T	T	154505955	1	4	119	0	1	0	0	0	0	0	0	0	8271	377	13	5		5	KIAA0922	4	154505955	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	41157173	154505955	36648321	86	112301											
RXFP1	59350	broad.mit.edu	37	chr4	159538326	159538326	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccgtttacctgataaacctCtctgtcaacacatgccaaga	5	14	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159538326	A	A	159538326	3	1	119	1	0	0	0	0	1	0	0	0	13870	913	32	3	758	3	RXFP1	4	159538326	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	5032371	159538326	31615950	87	112302											
WDR17	116966	broad.mit.edu	37	chr4	177077246	177077246	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagtgggacaaagccctgtCaattgcaccaggagtctctg	12	10	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177077246	A	A	177077246	4	1	119	1	0	0	0	0	0	1	0	0	17404	838	29	3	2619	3	WDR17	4	177077246	Nonsense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	17538920	177077246	14077030	88	112303											
SPCS3	60559	broad.mit.edu	37	chr4	177241123	177241124	+	5'UTR	DNP	GG	AA	AA													ctgcggcggcgcgcgctcccGgaacgcgcgcaccgcagacg							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	177241124	AA	AA	177241123	1	1	119	0	1	0	0	0	0	0	0	0	15141	1131	39	4		4	SPCS3	4	177241123	5'UTR	DNP	GG	TCGA-44-5643-01A-01D-1625-08	163877	177241123	13913153	89	112304											
SORBS2	8470	broad.mit.edu	37	chr4	186570601	186570601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagcgaaacataggccacCctggggggaaatgccttact	11	11	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186570601	A	A	186570601	1	1	119	0	1	0	0	0	0	0	0	0	15042	638	22	2		2	SORBS2	4	186570601	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	9329478	186570601	4583675	90	112305											
ADAMTS16	170690	broad.mit.edu	37	chr5	5237117	5237117	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctactgtatcgcagaaGgatttgatttcttcttttct	6	8	4	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5237117	T	T	5237117	4	4	119	1	0	0	0	0	0	1	0	0	261	1001	35	2	2113	2	ADAMTS16	5	5237117	Nonsense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08		5237117	175678143	91	112306											
DNAH5	1767	broad.mit.edu	37	chr5	13850862	13850862	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactggactacactgggcacTtcatgtgcccgagtcatgat	10	12	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13850862	A	A	13850862	3	1	119	1	0	0	0	0	1	0	0	0	4644	1606	56	5	9057	5	DNAH5	5	13850862	Missense_Mutation	SNP	T	TCGA-44-5643-01A-01D-1625-08	8613745	13850862	167064398	92	112307											
TRIO	7204	broad.mit.edu	37	chr5	14398885	14398885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcttatctagggttggcCgatgggcatttttaaaattg	10	6	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14398885	A	A	14398885	1	1	119	0	1	0	0	0	0	0	0	0	16677	667	23	1		1	TRIO	5	14398885	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	548023	14398885	166516375	93	112308											
CDH12	1010	broad.mit.edu	37	chr5	21884504	21884504	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaataacttcagagaaGtcagttggagaaaatgaaaa	8	6	3	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21884504	C	C	21884504	1	2	119	0	1	0	0	0	0	0	0	0	3128	1044	36	4		4	CDH12	5	21884504	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	7485619	21884504	159030756	94	112309											
ADAMTS12	81792	broad.mit.edu	37	chr5	33892007	33892007	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaaaaaagttttagccctCagctccagaaataaagcgct	7	10	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33892007	T	T	33892007	1	4	119	0	1	0	0	0	0	0	0	0	257	841	29	4		4	ADAMTS12	5	33892007	5'UTR	SNP	C	TCGA-44-5643-01A-01D-1625-08	12007503	33892007	147023253	95	112310											
HCN1	348980	broad.mit.edu	37	chr5	45695955	45695955	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcccctcggcgtcttcgaAgccccccgccggctcctcgc	12	21	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45695955	T	T	45695955	3	4	119	1	0	0	0	0	1	0	0	0	7062	72	3	5	2463	5	HCN1	5	45695955	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	11803948	45695955	135219305	96	112311											
GPR98	84059	broad.mit.edu	37	chr5	89948210	89948210	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtgtttctgtatcttggcAgctctttcagaatgattctg	9	7	5	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89948210	C	C	89948210	3	2	119	1	0	0	0	0	1	0	0	0	6787	188	7	5	3538	5	GPR98	5	89948210	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	44252255	89948210	90967050	97	112312											
IL4	3565	broad.mit.edu	37	chr5	132015185	132015185	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaactgggaggttctGgggagaaggctgctgcgttt	17	5	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132015185	A	A	132015185	1	1	119	0	1	0	0	0	0	0	0	0	7766	1363	47	4		4	IL4	5	132015185	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	42066975	132015185	48900075	98	112313											
PITX1	5307	broad.mit.edu	37	chr5	134364901	134364901	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcggcgtacacgtcctcGtagggctgcactaggccgct	14	15	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134364901	T	T	134364901	4	4	119	1	0	0	0	0	0	1	0	0	12049	1140	40	3	435	3	PITX1	5	134364901	Nonsense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	2349716	134364901	46550359	99	112314											
FAM114A2	10827	broad.mit.edu	37	chr5	153382469	153382469	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgactgtttttctccttcttCattctctgctaatggcttgg	7	11	4	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153382469	T	T	153382469	3	4	119	1	0	0	0	0	1	0	0	0	5450	835	29	4	483	4	FAM114A2	5	153382469	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	19017568	153382469	27532791	100	112315											
ITK	3702	broad.mit.edu	37	chr5	156645054	156645054	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcatgattcagcagaaCtcaacacattgggtattttt	8	8	3	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156645054	T	T	156645054	1	4	119	0	1	0	0	0	0	0	0	0	7979	580	20	4		4	ITK	5	156645054	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	3262585	156645054	24270206	101	112316											
ADRA1B	147	broad.mit.edu	37	chr5	159344165	159344165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccaccaactacttcattGtcaacctggccatggccgac	7	17	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159344165	T	T	159344165	3	4	119	1	0	0	0	0	1	0	0	0	335	1377	48	3	255	3	ADRA1B	5	159344165	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	2699111	159344165	21571095	102	112317											
RUFY1	80230	broad.mit.edu	37	chr5	179020526	179020526	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attggaatgaaaaccgaaatGgaaattgcaatgaagttact	9	4	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179020526	A	A	179020526	3	1	119	1	0	0	0	0	1	0	0	0	13849	1348	47	4	1335	4	RUFY1	5	179020526	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	19676361	179020526	1894734	103	112318											
GFPT2	9945	broad.mit.edu	37	chr5	179734220	179734220	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagttgtagccccgccccaTcaccagcagcgatctctgcg	9	16	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179734220	A	A	179734220	3	1	119	1	0	0	0	0	1	0	0	0	6410	1435	50	5	434	5	GFPT2	5	179734220	Missense_Mutation	SNP	T	TCGA-44-5643-01A-01D-1625-08	713694	179734220	1181040	104	112319											
ZNF193	7746	broad.mit.edu	37	chr6	28194989	28194989	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaatccagactgaaacgcAgtaatccactggcaagggaa	11	9	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28194989	C	C	28194989	3	2	119	1	0	0	0	0	1	0	0	0	17883	188	7	5	129	5	ZNF193	6	28194989	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08		28194989	142920078	105	112320											
TAP2	6891	broad.mit.edu	37	chr6	32797214	32797214	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctagggcactagtagccTcatccaggatgaggacccgc	11	13	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32797214	C	C	32797214	3	2	119	1	0	0	0	0	1	0	0	0	15670	1551	54	5	258	5	TAP2	6	32797214	Missense_Mutation	SNP	T	TCGA-44-5643-01A-01D-1625-08	4602225	32797214	138317853	106	112321											
PKHD1	5314	broad.mit.edu	37	chr6	51732854	51732854	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaggaaatggaaatgccaCtaagtttgaagagtttgtaa	11	3	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51732854	G	G	51732854	3	3	119	1	0	0	0	0	1	0	0	0	12066	565	20	4	4803	4	PKHD1	6	51732854	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	18935640	51732854	119382213	107	112322											
C6orf142	90523	broad.mit.edu	37	chr6	54122049	54122049	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttaaatgaaattttaacAtttatttttttctcacttct	2	5	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54122049	T	T	54122049	1	4	119	0	1	0	0	0	0	0	0	0	2356	232	8	5		5	C6orf142	6	54122049	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	2389195	54122049	116993018	108	112323											
FAM135A	57579	broad.mit.edu	37	chr6	71266385	71266387	+	Intron	DEL	ATG	-	-													ttattttttggtcacttaatAtgatactaataacttgttta					rs113383341		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71266387	-	-	71266385	6	5	119	0	1	1	0	1	0	0	0	0	5494	464	16	0		0	FAM135A	6	71266385	Intron	DEL	ATG	TCGA-44-5643-01A-01D-1625-08	17144336	71266385	99848682	109	112324											
MCHR2	84539	broad.mit.edu	37	chr6	100395747	100395747	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacacccactctccccctcGggcccattggtgaataagaa	7	15	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100395747	A	A	100395747	4	1	119	1	0	0	0	0	0	1	0	0	9476	1124	39	4	755	4	MCHR2	6	100395747	Nonsense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	29129362	100395747	70719320	110	112325											
UTRN	7402	broad.mit.edu	37	chr6	144808667	144808667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgcattattattttttttTcccatctccattccagtctc	2	11	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144808667	C	C	144808667	1	2	119	0	1	0	0	0	0	0	0	0	17230	1798	62	5		5	UTRN	6	144808667	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	44412920	144808667	26306400	111	112326											
GRM1	2911	broad.mit.edu	37	chr6	146480781	146480781	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctctctctctctctcacAcacacacatgcacacacaca	1	19	5	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146480781	T	T	146480781	1	4	119	0	1	0	0	0	0	0	0	0	6862	174	6	5		5	GRM1	6	146480781	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	1672114	146480781	24634286	112	112327											
FNDC1	84624	broad.mit.edu	37	chr6	159667901	159667901	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccctggagaaggagcgctGgatgactggtccttttctct	12	10	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159667901	C	C	159667901	1	2	119	0	1	0	0	0	0	0	0	0	6026	1363	47	4		4	FNDC1	6	159667901	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	13187120	159667901	11447166	113	112328											
T	6862	broad.mit.edu	37	chr6	166580205	166580205	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagctgggcgcctgcggctCcggcttgccccccggcaccc	14	20	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166580205	G	G	166580205	3	3	119	1	0	0	0	0	1	0	0	0	15607	864	30	4	989	4	T	6	166580205	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	6912304	166580205	4534862	114	112329											
TTLL2	83887	broad.mit.edu	37	chr6	167754296	167754296	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaccaacagcagcatcaAtaaatccggggcctcttatg	8	11	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167754296	G	G	167754296	3	3	119	1	0	0	0	0	1	0	0	0	16853	101	4	5	918	5	TTLL2	6	167754296	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	1174091	167754296	3360771	115	112330											
SDK1	221935	broad.mit.edu	37	chr7	4269770	4269770	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggtggctggtgggtgagtgGatggatagatgaatggaagg	22	1	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4269770	A	A	4269770	1	1	119	0	1	0	0	0	0	0	0	0	14081	1189	41	4		4	SDK1	7	4269770	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08		4269770	154868893	116	112331											
FOXK1	221937	broad.mit.edu	37	chr7	4796547	4796547	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccctcaccctggtcccgcAtctgctgcagatttgaggtg	10	15	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4796547	G	G	4796547	1	3	119	0	1	0	0	0	0	0	0	0	6074	232	8	5		5	FOXK1	7	4796547	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	526777	4796547	154342116	117	112332											
ZMIZ2	83637	broad.mit.edu	37	chr7	44803988	44803988	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgtgctacccacaatgaGaaactgactttcttcccatc	5	15	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44803988	A	A	44803988	1	1	119	0	1	0	0	0	0	0	0	0	17823	957	33	4		4	ZMIZ2	7	44803988	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	40007441	44803988	114334675	118	112333											
ZNF804B	219578	broad.mit.edu	37	chr7	88963423	88963423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaaacatttacaaccataGtgatgccaggatatctgaat	6	9	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88963423	T	T	88963423	3	4	119	1	0	0	0	0	1	0	0	0	18300	1029	36	3	1141	3	ZNF804B	7	88963423	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	44159435	88963423	70175240	119	112334											
PDAP1	11333	broad.mit.edu	37	chr7	98994233	98994233	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcggcgccagggcacaGggtgggcgagacacagcaga	18	11	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98994233	C	C	98994233	1	2	119	0	1	0	0	0	0	0	0	0	11707	1015	35	4		4	PDAP1	7	98994233	3'UTR	SNP	G	TCGA-44-5643-01A-01D-1625-08	10030810	98994233	60144430	120	112335											
PCOLCE	5118	broad.mit.edu	37	chr7	100201147	100201147	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccccctaataaggagtgcAtctggaccataacggtgaga	10	11	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100201147	T	T	100201147	3	4	119	1	0	0	0	0	1	0	0	0	11688	217	8	5	196	5	PCOLCE	7	100201147	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	1206914	100201147	58937516	121	112336											
CUX1	1523	broad.mit.edu	37	chr7	101848476	101848476	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccagtttctgttgctttTgcatgaaatgtctcactgcc	8	11	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101848476	C	C	101848476	1	2	119	0	1	0	0	0	0	0	0	0	4097	1827	63	5		5	CUX1	7	101848476	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	1647329	101848476	57290187	122	112337											
CUX1	1523	broad.mit.edu	37	chr7	101870706	101870706	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagtccccgatgagttccAgtgagtcggtgaagagcctg	14	10	0	5			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101870706	C	C	101870706	3	2	119	1	0	0	0	0	1	0	0	0	4097	188	7	5	3339	5	CUX1	7	101870706	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	22230	101870706	57267957	123	112338											
ORC5L	5001	broad.mit.edu	37	chr7	103801549	103801549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatttgctgttggagcaaCtctgctgtccacgatactat	8	9	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103801549	A	A	103801549	3	1	119	1	0	0	0	0	1	0	0	0	11359	565	20	3	199	3	ORC5L	7	103801549	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	1930843	103801549	55337114	124	112339											
CDHR3	222256	broad.mit.edu	37	chr7	105636781	105636781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acatcgtgaacctcaacgacGaagtccctcgctttaccagg	8	14	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105636781	A	A	105636781	3	1	119	1	0	0	0	0	1	0	0	0	3150	1059	37	4	716	4	CDHR3	7	105636781	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	1835232	105636781	53501882	125	112340											
AHCYL2	23382	broad.mit.edu	37	chr7	129062859	129062859	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccctcctcctcatgttctcGaatactttcaactcctctgt	3	17	4	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129062859	T	T	129062859	1	4	119	0	1	0	0	0	0	0	0	0	411	1073	37	3		3	AHCYL2	7	129062859	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	23426078	129062859	30075804	126	112341											
CHCHD3	54927	broad.mit.edu	37	chr7	132481310	132481310	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaattttggcctgcagatCagcacagactggatgagact	11	8	1	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132481310	A	A	132481310	3	1	119	1	0	0	0	0	1	0	0	0	3348	826	29	3	138	3	CHCHD3	7	132481310	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	3418451	132481310	26657353	127	112342											
STRA8	346673	broad.mit.edu	37	chr7	134939900	134939900	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgcaacccagaaaacccaGaggagaagtttcagctctat	9	11	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134939900	C	C	134939900	3	2	119	1	0	0	0	0	1	0	0	0	15441	943	33	4	871	4	STRA8	7	134939900	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	2458590	134939900	24198763	128	112343											
DGKI	9162	broad.mit.edu	37	chr7	137151674	137151674	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtctattcgataaaagcGatcagcagaagttgctaggg	11	7	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137151674	A	A	137151674	1	1	119	0	1	0	0	0	0	0	0	0	4511	1073	37	4		4	DGKI	7	137151674	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	2211774	137151674	21986989	129	112344											
MGAM	8972	broad.mit.edu	37	chr7	141734499	141734499	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactgtgttccctaataagaGaagcttcattctgacccgtt	8	10	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141734499	C	C	141734499	3	2	119	1	0	0	0	0	1	0	0	0	9634	942	33	4	1875	4	MGAM	7	141734499	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	4582825	141734499	17404164	130	112345											
MGAM	8972	broad.mit.edu	37	chr7	141755586	141755586	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccacccacactgctcaggcTttgggcttcatcttcccaaa	6	16	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141755586	A	A	141755586	1	1	119	0	1	0	0	0	0	0	0	0	9634	1624	56	5		5	MGAM	7	141755586	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	21087	141755586	17383077	131	112346											
CNTNAP2	26047	broad.mit.edu	37	chr7	147336253	147336253	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagatgcagacgcctgtggtCggctacaacccagaaaaata	10	11	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147336253	T	T	147336253	2	4	119	1	0	0	0	0	0	0	0	1	3679	871	31	4		4	CNTNAP2	7	147336253	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	5580667	147336253	11802410	132	112347											
MLL3	58508	broad.mit.edu	37	chr7	151902405	151902405	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttatcttgaatagtaagtCattttccaaaattaaatctg	4	6	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151902405	T	T	151902405	1	4	119	0	1	0	0	0	0	0	0	0	9715	841	29	4		4	MLL3	7	151902405	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	4566152	151902405	7236258	133	112348											
POLB	5423	broad.mit.edu	37	chr8	42226873	42226873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtattgttcagactttgttGctgacctgttaacttttcca	8	8	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42226873	T	T	42226873	1	4	119	0	1	0	0	0	0	0	0	0	12284	1334	46	3		3	POLB	8	42226873	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08		42226873	104137149	134	112349											
TRPA1	8989	broad.mit.edu	37	chr8	72958705	72958705	+	Intron	DEL	G	-	-													gtataataaaaaaaaaaaaaGaaaaaaaagaaactatttag							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72958705	-	-	72958705	6	5	119	0	1	1	0	1	0	0	0	0	16702	957	33	0		0	TRPA1	8	72958705	Intron	DEL	G	TCGA-44-5643-01A-01D-1625-08	30731832	72958705	73405317	135	112350											
CA3	761	broad.mit.edu	37	chr8	86360276	86360276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcagatggccaagctgcGgagcctcctctccagtgctg	12	13	1	1	rs142979911		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86360276	T	T	86360276	3	4	119	1	0	0	0	0	1	0	0	0	2543	1116	39	1	703	1	CA3	8	86360276	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	13401571	86360276	60003746	136	112351											
POLR2K	5440	broad.mit.edu	37	chr8	101163567	101163567	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattcagtatttgagtctgtGatttcaggggctaacaatgg	11	5	3	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101163567	A	A	101163567	1	1	119	0	1	0	0	0	0	0	0	0	12321	1305	45	4		4	POLR2K	8	101163567	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	14803291	101163567	45200455	137	112352											
RSPO2	340419	broad.mit.edu	37	chr8	108970255	108970255	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagggaaggtggttaggaagCgggagaattcaggaagcaca	17	4	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108970255	T	T	108970255	1	4	119	0	1	0	0	0	0	0	0	0	13821	783	27	4		4	RSPO2	8	108970255	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	7806688	108970255	37393767	138	112353											
CSMD3	114788	broad.mit.edu	37	chr8	113657409	113657409	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaattccgggtaaccaggtGataagattgttccactaggc	10	8	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113657409	T	T	113657409	4	4	119	1	0	0	0	0	0	1	0	0	3980	1294	45	3	8092	3	CSMD3	8	113657409	Nonsense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	4687154	113657409	32706613	139	112354											
CSMD3	114788	broad.mit.edu	37	chr8	113662262	113662262	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggtttgataacataaatTtgccagaaatcaaaagaact	6	5	1	3	rs111558050	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113662262	C	C	113662262	1	2	119	0	1	0	0	0	0	0	0	0	3980	1856	64	5		5	CSMD3	8	113662262	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	4853	113662262	32701760	140	112355											
COL14A1	7373	broad.mit.edu	37	chr8	121221975	121221976	+	Intron	INS	-	A	A													atataagtggctcaacatttINSaaaaaaaaatctcttgcagt							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121221976	A	A	121221975	6	5	119	0	1	1	1	0	0	0	0	0	3703	1769	61	0		0	COL14A1	8	121221975	Intron	INS	-	TCGA-44-5643-01A-01D-1625-08	7559713	121221975	25142047	141	112356											
PHF20L1	51105	broad.mit.edu	37	chr8	133817000	133817000	+	Intron	DEL	T	-	-													ttactggtaaactacaatgaTtttttttttgagggggggaa							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133817000	-	-	133817000	6	5	119	0	1	1	0	1	0	0	0	0	11927	1508	52	0		0	PHF20L1	8	133817000	Intron	DEL	T	TCGA-44-5643-01A-01D-1625-08	12595025	133817000	12547022	142	112357											
TG	7038	broad.mit.edu	37	chr8	133935512	133935512	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaccttgtcaatgaccgaGagcctgggagtaggagtcag	14	9	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133935512	C	C	133935512	1	2	119	0	1	0	0	0	0	0	0	0	15936	957	33	4		4	TG	8	133935512	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	118512	133935512	12428510	143	112358											
CPSF1	29894	broad.mit.edu	37	chr8	145622980	145622980	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtctctgagcccaggccctCggcctccgggccactgcggc	13	18	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145622980	T	T	145622980	3	4	119	1	0	0	0	0	1	0	0	0	3856	893	31	4	2215	4	CPSF1	8	145622980	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	11687468	145622980	741042	144	112359											
DOCK8	81704	broad.mit.edu	37	chr9	426848	426848	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgggaacctggccaggtttGacatgcgctttaatttgacc	11	9	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	426848	C	C	426848	1	2	119	0	1	0	0	0	0	0	0	0	4733	1305	45	4		4	DOCK8	9	426848	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08		426848	140786583	145	112360											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18639427	18639427	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgagccctatttagatAcctccttttcaagccacatc	6	12	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18639427	C	C	18639427	1	2	119	0	1	0	0	0	0	0	0	0	274	406	14	5		5	ADAMTSL1	9	18639427	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	18212579	18639427	122574004	146	112361											
TAF1L	138474	broad.mit.edu	37	chr9	32635526	32635526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccgagtctgacatgatggCggcagtgacggtagctgctg	16	9	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32635526	A	A	32635526	3	1	119	1	0	0	0	0	1	0	0	0	15642	768	27	3	5432	3	TAF1L	9	32635526	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	13996099	32635526	108577905	147	112362											
TLN1	7094	broad.mit.edu	37	chr9	35699902	35699902	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaaacagacagcagggtgcGaggcctgcaggaagagggct	16	9	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35699902	A	A	35699902	1	1	119	0	1	0	0	0	0	0	0	0	16070	1073	37	4		4	TLN1	9	35699902	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	3064376	35699902	105513529	148	112363											
ROR2	4920	broad.mit.edu	37	chr9	94537938	94537938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagaggacccccagcgcCttccttcaggcaatggcagt	12	15	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94537938	A	A	94537938	1	1	119	0	1	0	0	0	0	0	0	0	13638	696	24	2		2	ROR2	9	94537938	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	58838036	94537938	46675493	149	112364											
COL15A1	1306	broad.mit.edu	37	chr9	101817736	101817736	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgggactaggcagttaggGctagtcattgtactataagc	12	6	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101817736	A	A	101817736	1	1	119	0	1	0	0	0	0	0	0	0	3704	1218	42	4		4	COL15A1	9	101817736	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	7279798	101817736	39395695	150	112365											
MUSK	4593	broad.mit.edu	37	chr9	113547343	113547343	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagtaatattttaaagcCttgtgttttatggagttggt	11	2	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113547343	G	G	113547343	1	3	119	0	1	0	0	0	0	0	0	0	10083	696	24	4		4	MUSK	9	113547343	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	11729607	113547343	27666088	151	112366											
PHF19	26147	broad.mit.edu	37	chr9	123626344	123626344	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccggcttttataactgttCagagcgttgaggagatgtgg	13	7	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123626344	T	T	123626344	2	4	119	1	0	0	0	0	0	0	0	1	11924	813	29	4		4	PHF19	9	123626344	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	10079001	123626344	17587087	152	112367											
PHF19	26147	broad.mit.edu	37	chr9	123632765	123632765	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatctcattcagcggccctGatgtcttccctaggcagatg	11	12	3	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123632765	A	A	123632765	3	1	119	1	0	0	0	0	1	0	0	0	11924	1294	45	4	1629	4	PHF19	9	123632765	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	6421	123632765	17580666	153	112368											
DENND1A	57706	broad.mit.edu	37	chr9	126214667	126214667	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaatttgggctgaagacaGagtcatccaacaccaacaaa	8	10	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126214667	A	A	126214667	1	1	119	0	1	0	0	0	0	0	0	0	4466	957	33	4		4	DENND1A	9	126214667	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	2581902	126214667	14998764	154	112369											
LAMC3	10319	broad.mit.edu	37	chr9	133954714	133954714	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgctttgaagcaggggaCctgggagaggttggggctac	18	6	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133954714	G	G	133954714	1	3	119	0	1	0	0	0	0	0	0	0	8688	522	18	4		4	LAMC3	9	133954714	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	7740047	133954714	7258717	155	112370											
OLFM1	10439	broad.mit.edu	37	chr9	137967664	137967664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagtacgtgcatccaacGccattttcctccctgccagg	7	16	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137967664	T	T	137967664	1	4	119	0	1	0	0	0	0	0	0	0	10947	1102	38	3		3	OLFM1	9	137967664	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	4012950	137967664	3245767	156	112371											
ITGA8	8516	broad.mit.edu	37	chr10	15689005	15689005	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctggggttgctctcaaaTtcacgttccataaagagagg	10	9	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15689005	C	C	15689005	2	2	119	1	0	0	0	0	0	0	0	1	7952	1490	52	5		5	ITGA8	10	15689005	Silent	SNP	T	TCGA-44-5643-01A-01D-1625-08		15689005	119845742	157	112372											
VIM	7431	broad.mit.edu	37	chr10	17276623	17276623	+	Intron	DEL	T	-	-													acattcagtgagaaatatgaTtttttttttctaagagagtc							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17276623	-	-	17276623	6	5	119	0	1	1	0	1	0	0	0	0	17293	1508	52	0		0	VIM	10	17276623	Intron	DEL	T	TCGA-44-5643-01A-01D-1625-08	1587618	17276623	118258124	158	112373											
DNAJC1	64215	broad.mit.edu	37	chr10	22055047	22055047	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttgctggtgcccgtatttCaaccctttttggagatatga	10	9	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22055047	A	A	22055047	1	1	119	0	1	0	0	0	0	0	0	0	4668	841	29	3		3	DNAJC1	10	22055047	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	4778424	22055047	113479700	159	112374											
ANKRD30A	91074	broad.mit.edu	37	chr10	37506654	37506654	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaagaagaagagaagagaAgaaatgccgatatattaaat	9	4	0	5			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37506654	G	G	37506654	3	3	119	1	0	0	0	0	1	0	0	0	658	64	3	5	3077	5	ANKRD30A	10	37506654	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	15451607	37506654	98028093	160	112375											
ZNF365	22891	broad.mit.edu	37	chr10	64415024	64415024	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcagaaaaagcagagaaaAcaatgggagatgagattaaa	12	3	0	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64415024	G	G	64415024	1	3	119	0	1	0	0	0	0	0	0	0	17995	58	2	5		5	ZNF365	10	64415024	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	26908370	64415024	71119723	161	112376											
CDH23	64072	broad.mit.edu	37	chr10	73569657	73569657	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtggtggacattgtggccCgagacctggcaggccacaac	14	12	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73569657	T	T	73569657	4	4	119	1	0	0	0	0	0	1	0	0	3138	644	23	4	9386	4	CDH23	10	73569657	Nonsense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	9154633	73569657	61965090	162	112377											
NRG3	10718	broad.mit.edu	37	chr10	84738738	84738738	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctgcagcccagggcaaaGaagtggcatgctccatagga	13	10	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84738738	C	C	84738738	3	2	119	1	0	0	0	0	1	0	0	0	10744	942	33	4	1643	4	NRG3	10	84738738	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	11169081	84738738	50796009	163	112378											
LDB3	11155	broad.mit.edu	37	chr10	88441312	88441312	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctttagccctgccttctcCcggccctccgccttctcctc	5	22	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88441312	T	T	88441312	2	4	119	1	0	0	0	0	0	0	0	1	8769	610	22	4		4	LDB3	10	88441312	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	3702574	88441312	47093435	164	112379											
LIPF	8513	broad.mit.edu	37	chr10	90436047	90436047	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actatgatcaggtaagcttcTtaaagatggaattattcaca	7	6	3	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90436047	C	C	90436047	1	2	119	0	1	0	0	0	0	0	0	0	8895	1624	56	5		5	LIPF	10	90436047	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	1994735	90436047	45098700	165	112380											
PLCE1	51196	broad.mit.edu	37	chr10	96064080	96064080	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaacttggcatatagtagtCatttatcaatctgtgggacg	9	7	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96064080	T	T	96064080	1	4	119	0	1	0	0	0	0	0	0	0	12129	841	29	4		4	PLCE1	10	96064080	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	5628033	96064080	39470667	166	112381											
SORBS1	10580	broad.mit.edu	37	chr10	97081774	97081774	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcgctgctgggcttgaGgttgctgagaaatgattaaa	12	7	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97081774	A	A	97081774	3	1	119	1	0	0	0	0	1	0	0	0	15041	1000	35	4	246	4	SORBS1	10	97081774	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	1017694	97081774	38452973	167	112382											
SLIT1	6585	broad.mit.edu	37	chr10	98799806	98799806	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgcttgttgctgcatcGgaccacggtgtccaggcagg	15	11	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98799806	A	A	98799806	4	1	119	1	0	0	0	0	0	1	0	0	14853	1124	39	4	2436	4	SLIT1	10	98799806	Nonsense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	1718032	98799806	36734941	168	112383											
ENTPD7	57089	broad.mit.edu	37	chr10	101458472	101458472	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctccaacaccagccagGcctcactcaatggcatatat	6	16	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101458472	C	C	101458472	3	2	119	1	0	0	0	0	1	0	0	0	5186	1203	42	4	1226	4	ENTPD7	10	101458472	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	2658666	101458472	34076275	169	112384											
AFAP1L2	84632	broad.mit.edu	37	chr10	116056837	116056837	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggggtacagtctggggcaGaggcaggtgtgacagctttg	18	7	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116056837	A	A	116056837	3	1	119	1	0	0	0	0	1	0	0	0	355	942	33	4	134	4	AFAP1L2	10	116056837	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	14598365	116056837	19477910	170	112385											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118187666	118187666	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttattctttagaaattaCtattgctaatttcattctta	2	6	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118187666	A	A	118187666	1	1	119	0	1	0	0	0	0	0	0	0	12247	580	20	3		3	PNLIPRP3	10	118187666	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	2130829	118187666	17347081	171	112386											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118231353	118231353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtctttcttcgtgtaggCggggcagttaggaaaactgg	14	7	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118231353	A	A	118231353	2	1	119	1	0	0	0	0	0	0	0	1	12247	755	27	3		3	PNLIPRP3	10	118231353	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	43687	118231353	17303394	172	112387											
HSPA12A	259217	broad.mit.edu	37	chr10	118451919	118451919	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttccagatggcaggcacCgtgatgacccatctgacatc	10	13	1	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118451919	T	T	118451919	2	4	119	1	0	0	0	0	0	0	0	1	7473	639	23	4		4	HSPA12A	10	118451919	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	220566	118451919	17082828	173	112388											
DPYSL4	10570	broad.mit.edu	37	chr10	134015457	134015457	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgttccccaggcctctgGgaagatggacgagaatgagt	13	9	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134015457	A	A	134015457	3	1	119	1	0	0	0	0	1	0	0	0	4789	1232	43	4	1160	4	DPYSL4	10	134015457	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	15563538	134015457	1519290	174	112389											
MUC6	4588	broad.mit.edu	37	chr11	1019507	1019507	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaggtggttctgcagaggaCagccgcccggaacatcccct	12	14	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1019507	T	T	1019507	1	4	119	0	1	0	0	0	0	0	0	0	10074	493	17	4		4	MUC6	11	1019507	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08		1019507	133987009	175	112390											
RRM1	6240	broad.mit.edu	37	chr11	4148251	4148251	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctccttttctttaaaatCtgttgacacaaaggcatgcc	5	10	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4148251	G	G	4148251	1	3	119	0	1	0	0	0	0	0	0	0	13792	928	32	4		4	RRM1	11	4148251	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	3128744	4148251	130858265	176	112391											
OR51T1	401665	broad.mit.edu	37	chr11	4903460	4903460	+	Frame_Shift_Del	DEL	T	-	-													tctttgtgcatgctttctccTtgctggagtcctcggtgctg							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4903460	-	-	4903460	7	5	119	1	0	1	0	1	0	0	0	0	11200	1606	56	0	414	0	OR51T1	11	4903460	Frame_Shift_Del	DEL	T	TCGA-44-5643-01A-01D-1625-08	755209	4903460	130103056	177	112392											
PIK3C2A	5286	broad.mit.edu	37	chr11	17124380	17124380	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agataaagttctctgaagccTataaaaaacatacacaatta	4	7	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17124380	A	A	17124380	5	1	119	1	0	0	0	0	0	0	1	0	12004	1536	53	5	1420	5	PIK3C2A	11	17124380	Splice_Site	SNP	T	TCGA-44-5643-01A-01D-1625-08	12220920	17124380	117882136	178	112393											
SLC17A6	57084	broad.mit.edu	37	chr11	22364898	22364898	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggctacatcgcgtctcggCtggcagccaacaggtaatgc	13	12	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22364898	T	T	22364898	2	4	119	1	0	0	0	0	0	0	0	1	14534	796	28	4		4	SLC17A6	11	22364898	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	5240518	22364898	112641618	179	112394											
LGR4	55366	broad.mit.edu	37	chr11	27390166	27390166	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacagtgaatcctaatgatgGcgtttcacctgtaggaaatg	10	7	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27390166	C	C	27390166	3	2	119	1	0	0	0	0	1	0	0	0	8828	1203	42	4	755	4	LGR4	11	27390166	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	5025268	27390166	107616350	180	112395											
KCNA4	3739	broad.mit.edu	37	chr11	30033077	30033077	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgaaccacaaactcaaaGgaaaaccatacaatacagac	5	12	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30033077	T	T	30033077	2	4	119	1	0	0	0	0	0	0	0	1	8075	987	35	2		2	KCNA4	11	30033077	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	2642911	30033077	104973439	181	112396											
PAX6	5080	broad.mit.edu	37	chr11	31824237	31824237	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggcggcgagtggggcggCgccgggaggatcacctgcag	23	10	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31824237	T	T	31824237	1	4	119	0	1	0	0	0	0	0	0	0	11577	783	27	4		4	PAX6	11	31824237	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	1791160	31824237	103182279	182	112397											
OR5M10	390167	broad.mit.edu	37	chr11	56344632	56344632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgacacgggtgtcagagCaggccagcatgataagagga	14	7	1	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56344632	A	A	56344632	3	1	119	1	0	0	0	0	1	0	0	0	11267	710	25	3	385	3	OR5M10	11	56344632	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	24520395	56344632	78661884	183	112398											
NPAS4	266743	broad.mit.edu	37	chr11	66188928	66188928	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtctagggcagcgtgctgGcgagctggggagattcggga	19	7	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66188928	C	C	66188928	1	2	119	0	1	0	0	0	0	0	0	0	10660	1218	42	4		4	NPAS4	11	66188928	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	9844296	66188928	68817588	184	112399			2	90		5	5	3321	N	G_A	4.286434e-08
NPAS4	266743	broad.mit.edu	37	chr11	66189682	66189682	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctttctgcttgtgttcacAgccgaggggaaattgctcta	12	9	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66189682	C	C	66189682	2	2	119	1	0	0	0	0	0	0	0	1	10660	175	7	5		5	NPAS4	11	66189682	Silent	SNP	A	TCGA-44-5643-01A-01D-1625-08	754	66189682	68816834	185	112400			2	90		5	5	3321	N	G_A	4.286434e-08
NPAS4	266743	broad.mit.edu	37	chr11	66189745	66189745	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catctgggccactccatggtGagtgctaagggtcctttcag	12	11	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66189745	T	T	66189745	1	4	119	0	1	0	0	0	0	0	0	0	10660	1305	45	3		3	NPAS4	11	66189745	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	63	66189745	68816771	186	112401			2	90		5	5	3321	N	G_A	4.286434e-08
NPAS4	266743	broad.mit.edu	37	chr11	66191054	66191054	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttctttctccccagtggctGagagtggagatattcaggca	11	10	3	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66191054	C	C	66191054	3	2	119	1	0	0	0	0	1	0	0	0	10660	1291	45	4	836	4	NPAS4	11	66191054	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	1309	66191054	68815462	187	112402			2	90		5	5	3321	N	G_A	4.286434e-08
NPAS4	266743	broad.mit.edu	37	chr11	66192248	66192248	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactactctgaaaaggagcaGaatgagatagaccgtctcat	9	9	2	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66192248	T	T	66192248	3	4	119	1	0	0	0	0	1	0	0	0	10660	933	33	3	1913	3	NPAS4	11	66192248	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	1194	66192248	68814268	188	112403			2	90		5	5	3321	N	G_A	4.286434e-08
ALDH3B2	222	broad.mit.edu	37	chr11	67450317	67450317	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatccatgcctgaatctgtgTtatacaatttttaggtgcct	7	8	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67450317	G	G	67450317	1	3	119	0	1	0	0	0	0	0	0	0	500	1740	60	5		5	ALDH3B2	11	67450317	5'Flank	SNP	T	TCGA-44-5643-01A-01D-1625-08	1258069	67450317	67556199	189	112404											
FADD	8772	broad.mit.edu	37	chr11	70049737	70049737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaacgacctggagcccGggcacaccgagctcctgcgc	13	16	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70049737	T	T	70049737	3	4	119	1	0	0	0	0	1	0	0	0	5410	1116	39	1	174	1	FADD	11	70049737	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	2599420	70049737	64956779	190	112405											
NADSYN1	55191	broad.mit.edu	37	chr11	71169641	71169641	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctgggacaaaggcaagctCaagggcatgacccacccaac	10	14	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71169641	G	G	71169641	1	3	119	0	1	0	0	0	0	0	0	0	10232	841	29	4		4	NADSYN1	11	71169641	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	1119904	71169641	63836875	191	112406											
GAB2	9846	broad.mit.edu	37	chr11	77930530	77930530	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggaggaagaaggtggGcacgggatcttcctgagctg	20	6	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77930530	A	A	77930530	1	1	119	0	1	0	0	0	0	0	0	0	6209	1218	42	4		4	GAB2	11	77930530	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	6760889	77930530	57075986	192	112407											
NAALAD2	10003	broad.mit.edu	37	chr11	89891357	89891357	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggagtgggaatccccCgaatacctgtacatcccatt	9	11	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89891357	T	T	89891357	4	4	119	1	0	0	0	0	0	1	0	0	10222	644	23	4	867	4	NAALAD2	11	89891357	Nonsense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	11960827	89891357	45115159	193	112408											
GUCY1A2	2977	broad.mit.edu	37	chr11	106698601	106698601	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccctgcagtcatgggagGgcgcgctgccttcatgctgc	13	14	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106698601	A	A	106698601	1	1	119	0	1	0	0	0	0	0	0	0	6958	1247	43	4		4	GUCY1A2	11	106698601	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	16807244	106698601	28307915	194	112409											
HTR3A	3359	broad.mit.edu	37	chr11	113850097	113850097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcgagggaaggtgagcGgagaggctgaggggcaccct	20	8	0	3	rs115102727	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113850097	T	T	113850097	1	4	119	0	1	0	0	0	0	0	0	0	7514	1131	39	1		1	HTR3A	11	113850097	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	7151496	113850097	21156419	195	112410											
ASAM	79827	broad.mit.edu	37	chr11	122953875	122953875	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagtccagagtaggacatGgtaagattctgcagcagaac	11	8	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122953875	A	A	122953875	2	1	119	1	0	0	0	0	0	0	0	1	1013	1335	47	4		4	ASAM	11	122953875	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	9103778	122953875	12052641	196	112411											
PTPN6	5777	broad.mit.edu	37	chr12	7066919	7066919	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacaaccgaatacaaactcCgtaccttacaggtctccccg	5	16	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7066919	T	T	7066919	3	4	119	1	0	0	0	0	1	0	0	0	12900	652	23	4	1233	4	PTPN6	12	7066919	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08		7066919	126784976	197	112412											
C3AR1	719	broad.mit.edu	37	chr12	8211356	8211356	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacagttgtactatttctttCtgaaatgacattgtttgagg	8	6	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8211356	G	G	8211356	3	3	119	1	0	0	0	0	1	0	0	0	2227	922	32	4	26	4	C3AR1	12	8211356	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	1144437	8211356	125640539	198	112413											
CLEC2B	9976	broad.mit.edu	37	chr12	10010150	10010152	+	In_Frame_Del	DEL	CTT	-	-													tttacttgaattccaatctcCttcttctttagagaaataat							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10010152	-	-	10010150	7	5	119	1	0	1	0	1	0	0	0	0	3539	690	24	0	301	0	CLEC2B	12	10010150	In_Frame_Del	DEL	CTT	TCGA-44-5643-01A-01D-1625-08	1798794	10010150	123841745	199	112414											
TAS2R7	50837	broad.mit.edu	37	chr12	10954186	10954186	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagaaacatcttatctttgTttgtcctagaaaagcatagt	6	6	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10954186	C	C	10954186	1	2	119	0	1	0	0	0	0	0	0	0	15705	1740	60	5		5	TAS2R7	12	10954186	3'UTR	SNP	T	TCGA-44-5643-01A-01D-1625-08	944036	10954186	122897709	200	112415											
PIK3C2G	5288	broad.mit.edu	37	chr12	18544292	18544292	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagtgttccttcctacatAactggtttcatttcctgatg	8	9	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18544292	G	G	18544292	1	3	119	0	1	0	0	0	0	0	0	0	12006	377	13	5		5	PIK3C2G	12	18544292	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	7590106	18544292	115307603	201	112416											
SLCO1A2	6579	broad.mit.edu	37	chr12	21471663	21471663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaataaaattcagactagCtccacagataagacaaaata	6	7	1	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21471663	A	A	21471663	1	1	119	0	1	0	0	0	0	0	0	0	14836	812	28	3		3	SLCO1A2	12	21471663	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	2927371	21471663	112380232	202	112417											
PYROXD1	79912	broad.mit.edu	37	chr12	21590695	21590695	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgccctcccccgacggcaGggaagttcgtggtggtcggc	16	15	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21590695	A	A	21590695	3	1	119	1	0	0	0	0	1	0	0	0	12974	1000	35	4	33	4	PYROXD1	12	21590695	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	119032	21590695	112261200	203	112418											
SOX5	6660	broad.mit.edu	37	chr12	23728512	23728512	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcaagccgtgtatagagTgggtgtgatgtgccatttaa	12	5	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23728512	A	A	23728512	1	1	119	0	1	0	0	0	0	0	0	0	15068	1711	59	5		5	SOX5	12	23728512	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	2137817	23728512	110123383	204	112419											
ITPR2	3709	broad.mit.edu	37	chr12	26628358	26628358	+	Intron	DEL	A	-	-													ttcatcacatccacctatccAaaaaaaaaaagaatattgaa							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26628358	-	-	26628358	6	5	119	0	1	1	0	1	0	0	0	0	7991	145	5	0		0	ITPR2	12	26628358	Intron	DEL	A	TCGA-44-5643-01A-01D-1625-08	2899846	26628358	107223537	205	112420											
KRT7	3855	broad.mit.edu	37	chr12	52627141	52627141	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccgccttctcgggccgcGgcgcccaggtgcgcctgagc	15	18	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52627141	A	A	52627141	3	1	119	1	0	0	0	0	1	0	0	0	8554	1116	39	4	63	4	KRT7	12	52627141	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	25998783	52627141	81224754	206	112421											
KRT76	51350	broad.mit.edu	37	chr12	53169462	53169462	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccatcccaaatgtagaacTgtggagaaggaacccagttc	10	11	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53169462	A	A	53169462	1	1	119	0	1	0	0	0	0	0	0	0	8560	1595	55	5		5	KRT76	12	53169462	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	542321	53169462	80682433	207	112422											
CTDSP2	10106	broad.mit.edu	37	chr12	58218485	58218485	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccacagcctctatgggaGctttctgtccttggctccga	10	14	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58218485	A	A	58218485	1	1	119	0	1	0	0	0	0	0	0	0	4038	986	34	4		4	CTDSP2	12	58218485	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	5049023	58218485	75633410	208	112423											
SYT1	6857	broad.mit.edu	37	chr12	79693431	79693431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttacaaagggggatgtGggcctctagttgttgacagc	13	8	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79693431	T	T	79693431	1	4	119	0	1	0	0	0	0	0	0	0	15584	1363	47	2		2	SYT1	12	79693431	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	21474946	79693431	54158464	209	112424											
ANO4	121601	broad.mit.edu	37	chr12	101460595	101460595	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggacctgaatgttgaTccctcacttcagattgacat	8	10	3	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101460595	C	C	101460595	1	2	119	0	1	0	0	0	0	0	0	0	699	1450	50	5		5	ANO4	12	101460595	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	21767164	101460595	32391300	210	112425											
CCDC64	92558	broad.mit.edu	37	chr12	120494851	120494851	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taacagcaatggatgccttaGaggaagagagcttcaggctg	13	7	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120494851	C	C	120494851	1	2	119	0	1	0	0	0	0	0	0	0	2863	957	33	4		4	CCDC64	12	120494851	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	19034256	120494851	13357044	211	112426											
ANAPC5	51433	broad.mit.edu	37	chr12	121790215	121790215	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacaaggcacaacactaccGggtctacatctccgcccgcc	7	19	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121790215	C	C	121790215	1	2	119	0	1	0	0	0	0	0	0	0	605	1131	39	4		4	ANAPC5	12	121790215	5'UTR	SNP	G	TCGA-44-5643-01A-01D-1625-08	1295364	121790215	12061680	212	112427											
KNTC1	9735	broad.mit.edu	37	chr12	123067518	123067518	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgggaacatcaaaacagcActgaaaaaatgcaggtgaca	10	7	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123067518	G	G	123067518	2	3	119	1	0	0	0	0	0	0	0	1	8499	146	6	5		5	KNTC1	12	123067518	Silent	SNP	A	TCGA-44-5643-01A-01D-1625-08	1277303	123067518	10784377	213	112428											
RAN	5901	broad.mit.edu	37	chr12	131359372	131359373	+	Intron	INS	-	T	T													tctattatatatggaaatgaINStttttttttccccaagacgg					rs147801513	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131359373	T	T	131359372	6	5	119	0	1	1	1	0	0	0	0	0	13132	348	12	0		0	RAN	12	131359372	Intron	INS	-	TCGA-44-5643-01A-01D-1625-08	8291854	131359372	2492523	214	112429											
ZMYM5	9205	broad.mit.edu	37	chr13	20411849	20411849	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttattaaaaactcctttttTaagattccagttgttttcac	3	8	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20411849	A	A	20411849	4	1	119	1	0	0	0	0	0	1	0	0	17829	1763	61	5	1147	5	ZMYM5	13	20411849	Nonsense_Mutation	SNP	T	TCGA-44-5643-01A-01D-1625-08		20411849	94758029	215	112430											
PARP4	143	broad.mit.edu	37	chr13	25075700	25075700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacaattctctgcctatgGtatctttgacaaacccaagc	7	11	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25075700	T	T	25075700	1	4	119	0	1	0	0	0	0	0	0	0	11557	1276	44	3		3	PARP4	13	25075700	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	4663851	25075700	90094178	216	112431											
FAM48A	55578	broad.mit.edu	37	chr13	37618333	37618333	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggaatcttaatttaaaacaTgaagtttgaaaatgatcatg	7	4	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37618333	C	C	37618333	1	2	119	0	1	0	0	0	0	0	0	0	5623	1479	51	5		5	FAM48A	13	37618333	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	12542633	37618333	77551545	217	112432											
MRPS31	10240	broad.mit.edu	37	chr13	41332897	41332897	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaactttattcaattgtttTtttaaaaactataatcatac	2	5	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41332897	C	C	41332897	1	2	119	0	1	0	0	0	0	0	0	0	9935	1856	64	5		5	MRPS31	13	41332897	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	3714564	41332897	73836981	218	112433											
NAA16	79612	broad.mit.edu	37	chr13	41894957	41894957	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagagaccttgaaggttaCcgagtaagtacttcattctt	9	7	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41894957	A	A	41894957	4	1	119	1	0	0	0	0	0	1	0	0	10213	518	18	3	413	3	NAA16	13	41894957	Nonsense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	562060	41894957	73274921	219	112434											
OLFM4	10562	broad.mit.edu	37	chr13	53617300	53617300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacaaaaacaatgtccttGccattcgccgagaaatcgtg	8	10	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53617300	T	T	53617300	3	4	119	1	0	0	0	0	1	0	0	0	10950	1319	46	3	645	3	OLFM4	13	53617300	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	11722343	53617300	61552578	220	112435											
KLHL1	57626	broad.mit.edu	37	chr13	70371027	70371027	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccaaactgcagccttctGccattcatcatccctgcctg	5	17	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70371027	T	T	70371027	2	4	119	1	0	0	0	0	0	0	0	1	8436	1306	46	3		3	KLHL1	13	70371027	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	16753727	70371027	44798851	221	112436											
DOCK9	23348	broad.mit.edu	37	chr13	99537826	99537826	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattacatatgcaacccagaCatgctacatatccgttacct	4	12	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99537826	T	T	99537826	1	4	119	0	1	0	0	0	0	0	0	0	4734	493	17	4		4	DOCK9	13	99537826	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	29166799	99537826	15632052	222	112437											
ABHD13	84945	broad.mit.edu	37	chr13	108881533	108881533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaattattgatattctccCtctctctctctaggatactt	4	10	4	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108881533	A	A	108881533	1	1	119	0	1	0	0	0	0	0	0	0	78	696	24	2		2	ABHD13	13	108881533	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	9343707	108881533	6288345	223	112438											
OR4Q3	441669	broad.mit.edu	37	chr14	20216063	20216063	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttttatccactctatcatGcaggtcatactagtcatcca	6	11	4	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20216063	A	A	20216063	3	1	119	1	0	0	0	0	1	0	0	0	11175	1319	46	4	479	4	OR4Q3	14	20216063	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08		20216063	87133477	224	112439											
OR4L1	122742	broad.mit.edu	37	chr14	20529107	20529107	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggccataagaaaattaCggttccaatatgttagttct	8	6	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20529107	T	T	20529107	3	4	119	1	0	0	0	0	1	0	0	0	11168	527	19	4	906	4	OR4L1	14	20529107	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	313044	20529107	86820433	225	112440											
CHD8	57680	broad.mit.edu	37	chr14	21873432	21873432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgttaagtagattaggCatgttggtatgacctgcccc	11	7	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21873432	A	A	21873432	3	1	119	1	0	0	0	0	1	0	0	0	3362	710	25	3	4594	3	CHD8	14	21873432	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	1344325	21873432	85476108	226	112441											
CPNE6	9362	broad.mit.edu	37	chr14	24543955	24543955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagctgggagccgttccGcctgtccctgcattccctat	9	18	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24543955	T	T	24543955	3	4	119	1	0	0	0	0	1	0	0	0	3848	1087	38	3	645	3	CPNE6	14	24543955	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	2670523	24543955	82805585	227	112442											
KIAA0831	22863	broad.mit.edu	37	chr14	55862765	55862765	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attctgtgaagttcaaaaatGtaaaatcaaacacttaaaat	4	5	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55862765	C	C	55862765	1	2	119	0	1	0	0	0	0	0	0	0	8265	1392	48	4		4	KIAA0831	14	55862765	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	31318810	55862765	51486775	228	112443											
ZFP36L1	677	broad.mit.edu	37	chr14	69256784	69256784	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggcaaaagccgatggtgtgGaaggtgcggcacagctccgt	17	9	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69256784	C	C	69256784	3	2	119	1	0	0	0	0	1	0	0	0	17772	1165	41	4	537	4	ZFP36L1	14	69256784	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	13394019	69256784	38092756	229	112444											
NRXN3	9369	broad.mit.edu	37	chr14	79433607	79433607	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgtgatcaaaggcaacaGtgaccgccccctgaatgaca	9	12	1	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79433607	A	A	79433607	3	1	119	1	0	0	0	0	1	0	0	0	10762	1029	36	4	1745	4	NRXN3	14	79433607	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	10176823	79433607	27915933	230	112445											
OR4M2	390538	broad.mit.edu	37	chr15	22369133	22369133	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacatcacacaggttgtccgGattgcctgtgccaacacctt	9	13	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22369133	T	T	22369133	2	4	119	1	0	0	0	0	0	0	0	1	11170	1161	41	3		3	OR4M2	15	22369133	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08		22369133	80162259	231	112446											
NDN	4692	broad.mit.edu	37	chr15	23932094	23932094	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgccggggctggcggtgCcgggcccggctgggccgcgc	21	16	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23932094	G	G	23932094	3	3	119	1	0	0	0	0	1	0	0	0	10342	739	26	4	698	4	NDN	15	23932094	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	1562961	23932094	78599298	232	112447											
C15orf2	23742	broad.mit.edu	37	chr15	24922493	24922493	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcgtaggagcagcgcctctCacttctgaccccccaacacc	8	18	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24922493	G	G	24922493	2	3	119	1	0	0	0	0	0	0	0	1	1797	813	29	4		4	C15orf2	15	24922493	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	990399	24922493	77608899	233	112448											
GABRB3	2562	broad.mit.edu	37	chr15	26793342	26793342	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cataatttccctatgcagatCccggacagaatgatgtcatg	8	10	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26793342	A	A	26793342	1	1	119	0	1	0	0	0	0	0	0	0	6228	870	30	3		3	GABRB3	15	26793342	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	1870849	26793342	75738050	234	112449											
OCA2	4948	broad.mit.edu	37	chr15	28141319	28141319	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcaatgaagtttttgGtgccctgaagagagctgtag	14	6	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28141319	A	A	28141319	1	1	119	0	1	0	0	0	0	0	0	0	10910	1276	44	4		4	OCA2	15	28141319	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	1347977	28141319	74390073	235	112450											
TJP1	7082	broad.mit.edu	37	chr15	30053374	30053374	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgcggcgagtgcctGgaatgatcagaaggctctga	16	9	2	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30053374	A	A	30053374	2	1	119	1	0	0	0	0	0	0	0	1	16052	1335	47	4		4	TJP1	15	30053374	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	1912055	30053374	72478018	236	112451											
CHRM5	1133	broad.mit.edu	37	chr15	34355794	34355794	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccactggcccaagcgcCaattgggccaaagctgagca	11	14	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34355794	A	A	34355794	2	1	119	1	0	0	0	0	0	0	0	1	3411	581	21	2		2	CHRM5	15	34355794	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	4302420	34355794	68175598	237	112452											
RPAP1	26015	broad.mit.edu	37	chr15	41823208	41823208	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaccaaaatatgacccccGcctcctgcaaacctggggct	7	17	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41823208	A	A	41823208	1	1	119	0	1	0	0	0	0	0	0	0	13652	1102	38	4		4	RPAP1	15	41823208	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	7467414	41823208	60708184	238	112453											
UNC13C	440279	broad.mit.edu	37	chr15	54825227	54825227	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagcaatggatgcagagAttgtgttaagatctcttatg	12	5	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54825227	G	G	54825227	3	3	119	1	0	0	0	0	1	0	0	0	17112	333	12	5	5753	5	UNC13C	15	54825227	Missense_Mutation	SNP	A	TCGA-44-5643-01A-01D-1625-08	13002019	54825227	47706165	239	112454											
SMAD6	4091	broad.mit.edu	37	chr15	67008701	67008701	+	Intron	DEL	G	-	-													cagagatgcatgagaaagaaGaaaaaagagagcgctgcccc							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67008701	-	-	67008701	6	5	119	0	1	1	0	1	0	0	0	0	14876	957	33	0		0	SMAD6	15	67008701	Intron	DEL	G	TCGA-44-5643-01A-01D-1625-08	12183474	67008701	35522691	240	112455											
THSD4	79875	broad.mit.edu	37	chr15	71457586	71457586	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccatatcttgaaattttccTttgtctttagcagaaatggt	7	7	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71457586	G	G	71457586	1	3	119	0	1	0	0	0	0	0	0	0	16001	1624	56	5		5	THSD4	15	71457586	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	4448885	71457586	31073806	241	112456											
SEMA7A	8482	broad.mit.edu	37	chr15	74704231	74704231	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggggaaggctcacccgctCagcatccagcgacatggtct	13	13	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74704231	T	T	74704231	3	4	119	1	0	0	0	0	1	0	0	0	14156	835	29	4	599	4	SEMA7A	15	74704231	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	3246645	74704231	27827161	242	112457											
LRRK1	79705	broad.mit.edu	37	chr15	101567857	101567857	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagatccccaggagctaCctgagcctgcaggaggccgt	12	16	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101567857	T	T	101567857	2	4	119	1	0	0	0	0	0	0	0	1	9119	518	18	4		4	LRRK1	15	101567857	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	26863626	101567857	963535	243	112458											
TARSL2	123283	broad.mit.edu	37	chr15	102264628	102264628	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgacgccgagcggggtgcCcgcgactgcggcgagggcga	19	14	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102264628	T	T	102264628	1	4	119	0	1	0	0	0	0	0	0	0	15680	638	22	4		4	TARSL2	15	102264628	5'UTR	SNP	C	TCGA-44-5643-01A-01D-1625-08	696771	102264628	266764	244	112459											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1818265	1818265	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatcatccacgtgtatggcGatgacagcagtgacagggcg	14	10	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1818265	A	A	1818265	3	1	119	1	0	0	0	0	1	0	0	0	9378	1058	37	4	3759	4	MAPK8IP3	16	1818265	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08		1818265	88536488	245	112460											
RPL3L	6123	broad.mit.edu	37	chr16	1994859	1994859	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaagtctcccgaggtctcCggcgtttccttctccagatg	9	14	3	1	rs140950130		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1994859	T	T	1994859	2	4	119	1	0	0	0	0	0	0	0	1	13705	639	23	4		4	RPL3L	16	1994859	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	176594	1994859	88359894	246	112461											
MEFV	4210	broad.mit.edu	37	chr16	3294567	3294567	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggagtggtccacttttcAgggacaggcactgtcttagc	13	9	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3294567	G	G	3294567	2	3	119	1	0	0	0	0	0	0	0	1	9552	175	7	5		5	MEFV	16	3294567	Silent	SNP	A	TCGA-44-5643-01A-01D-1625-08	1299708	3294567	87060186	247	112462											
XYLT1	64131	broad.mit.edu	37	chr16	17232349	17232349	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgttgtccaccatggtgtCgcagtgggggctgttctcca	14	10	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17232349	T	T	17232349	3	4	119	1	0	0	0	0	1	0	0	0	17590	884	31	4	1272	4	XYLT1	16	17232349	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	13937782	17232349	73122404	248	112463											
NOD2	64127	broad.mit.edu	37	chr16	50765750	50765750	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtctccgggaggatgttcGtctcagtttgtttgtgagca	13	7	2	1	rs5743296		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50765750	A	A	50765750	1	1	119	0	1	0	0	0	0	0	0	0	10612	1160	40	4		4	NOD2	16	50765750	3'UTR	SNP	G	TCGA-44-5643-01A-01D-1625-08	33533401	50765750	39589003	249	112464											
SALL1	6299	broad.mit.edu	37	chr16	51171060	51171060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctgtcctccacgaagCgggtgaagcggaagttggtt	14	10	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51171060	A	A	51171060	3	1	119	1	0	0	0	0	1	0	0	0	13921	768	27	3	40	3	SALL1	16	51171060	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	405310	51171060	39183693	250	112465											
CA5A	763	broad.mit.edu	37	chr16	87927233	87927233	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacagacatacctacagacGgagtgctgtgcccctggtgc	12	12	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87927233	A	A	87927233	1	1	119	0	1	0	0	0	0	0	0	0	2545	1131	39	4		4	CA5A	16	87927233	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	36756173	87927233	2427520	251	112466											
CDH15	1013	broad.mit.edu	37	chr16	89245975	89245975	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcgtctcccctacccccTggttcaggtgagcaggtgga	12	14	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89245975	C	C	89245975	3	2	119	1	0	0	0	0	1	0	0	0	3130	1580	55	5	200	5	CDH15	16	89245975	Missense_Mutation	SNP	T	TCGA-44-5643-01A-01D-1625-08	1318742	89245975	1108778	252	112467											
TP53	7157	broad.mit.edu	37	chr17	7579580	7579580	+	Frame_Shift_Del	DEL	G	-	-													aatcatccattgcttgggacGgcaagggggactgtagatgg							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7579580	-	-	7579580	7	5	119	1	0	1	0	1	0	0	0	0	16505	1116	39	0	1195	0	TP53	17	7579580	Frame_Shift_Del	DEL	G	TCGA-44-5643-01A-01D-1625-08		7579580	73615630	253	112468											
CPD	1362	broad.mit.edu	37	chr17	28791658	28791658	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcattatttggtgcatctgCtcaatcaagtctaatagaca	7	8	4	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28791658	T	T	28791658	2	4	119	1	0	0	0	0	0	0	0	1	3830	805	28	4		4	CPD	17	28791658	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	21212078	28791658	52403552	254	112469											
ADAM11	4185	broad.mit.edu	37	chr17	42849012	42849012	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacccgcactccttcgccGccctctccacctgccagggg	10	20	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42849012	A	A	42849012	3	1	119	1	0	0	0	0	1	0	0	0	235	1087	38	4	460	4	ADAM11	17	42849012	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	14057354	42849012	38346198	255	112470											
NPEPPS	9520	broad.mit.edu	37	chr17	45668307	45668307	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttacaatgaaatacgtaAtttgttacatagatactttg	5	5	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45668307	G	G	45668307	1	3	119	0	1	0	0	0	0	0	0	0	10670	116	4	5		5	NPEPPS	17	45668307	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	2819295	45668307	35526903	256	112471											
LPO	4025	broad.mit.edu	37	chr17	56320531	56320531	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggaggatagaagtccaaaAtcaaggtgttggcagggctg	16	6	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56320531	T	T	56320531	1	4	119	0	1	0	0	0	0	0	0	0	9009	116	4	5		5	LPO	17	56320531	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	10652224	56320531	24874679	257	112472											
HEATR6	63897	broad.mit.edu	37	chr17	58127025	58127025	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgattcttgctgtcattcagCccgagcagcactgtgatgca	10	12	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58127025	T	T	58127025	2	4	119	1	0	0	0	0	0	0	0	1	7100	726	26	4		4	HEATR6	17	58127025	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	1806494	58127025	23068185	258	112473											
SOX9	6662	broad.mit.edu	37	chr17	70117755	70117755	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttccccgtgtgcatccgcGaggcggtcagccaggtgctc	14	14	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70117755	A	A	70117755	3	1	119	1	0	0	0	0	1	0	0	0	15072	1059	37	4	225	4	SOX9	17	70117755	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	11990730	70117755	11077455	259	112474											
RNF157	114804	broad.mit.edu	37	chr17	74150240	74150240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaagaagacgatctttccTctaacagccccatacaactg	5	12	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74150240	A	A	74150240	1	1	119	0	1	0	0	0	0	0	0	0	13565	1566	54	5		5	RNF157	17	74150240	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	4032485	74150240	7044970	260	112475											
RPTOR	57521	broad.mit.edu	37	chr17	78811791	78811791	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcatcgaggaaggcactgcGtttcgggtgagtccctccaa	12	11	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78811791	A	A	78811791	2	1	119	1	0	0	0	0	0	0	0	1	13776	1132	40	4		4	RPTOR	17	78811791	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	4661551	78811791	2383419	261	112476											
CCDC57	284001	broad.mit.edu	37	chr17	80159587	80159587	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccactccctggcctgggcGaaggcggcgtcatagcgctc	13	16	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80159587	A	A	80159587	2	1	119	1	0	0	0	0	0	0	0	1	2855	1049	37	4		4	CCDC57	17	80159587	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	1347796	80159587	1035623	262	112477											
MYOM1	8736	broad.mit.edu	37	chr18	3142040	3142040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgacagagaggtctgtcGgggggccaggcacaataccc	15	11	1	2	rs138431527	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3142040	T	T	3142040	3	4	119	1	0	0	0	0	1	0	0	0	10185	1116	39	1	3235	1	MYOM1	18	3142040	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08		3142040	74935208	263	112478											
PTPRM	5797	broad.mit.edu	37	chr18	8248184	8248184	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaattttaggtgagaacaTttccctttaccacagtttat	6	8	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8248184	C	C	8248184	1	2	119	0	1	0	0	0	0	0	0	0	12914	1508	52	5		5	PTPRM	18	8248184	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	5106144	8248184	69829064	264	112479											
FHOD3	80206	broad.mit.edu	37	chr18	34174788	34174788	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagccctgaagctgctgctCgtctttgtagagtactcgga	11	11	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34174788	A	A	34174788	2	1	119	1	0	0	0	0	0	0	0	1	5940	871	31	3		3	FHOD3	18	34174788	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	25926604	34174788	43902460	265	112480											
ATP8B1	5205	broad.mit.edu	37	chr18	55373902	55373902	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcttccccagattcaaaTgttgaagtcctaaacctcca	6	12	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55373902	G	G	55373902	1	3	119	0	1	0	0	0	0	0	0	0	1198	1479	51	5		5	ATP8B1	18	55373902	Intron	SNP	T	TCGA-44-5643-01A-01D-1625-08	21199114	55373902	22703346	266	112481											
NETO1	81832	broad.mit.edu	37	chr18	70526003	70526003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttacacaagattttgtaCtatgaagatagaaaaatgag	8	4	1	5	rs138293582	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70526003	A	A	70526003	1	1	119	0	1	0	0	0	0	0	0	0	10434	580	20	3		3	NETO1	18	70526003	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	15152101	70526003	7551245	267	112482											
C18orf22	79863	broad.mit.edu	37	chr18	77798637	77798637	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgatgacctttgctttctGaatgtacttgctttttgctc	9	8	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77798637	A	A	77798637	1	1	119	0	1	0	0	0	0	0	0	0	1916	1305	45	4		4	C18orf22	18	77798637	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	7272634	77798637	278611	268	112483											
LONP1	9361	broad.mit.edu	37	chr19	5720022	5720022	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtcgcaggtccgctggcctCggagcaaccacgctcctgct	12	17	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5720022	T	T	5720022	3	4	119	1	0	0	0	0	1	0	0	0	8979	884	31	4	2829	4	LONP1	19	5720022	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08		5720022	53408961	269	112484											
PNPLA6	10908	broad.mit.edu	37	chr19	7607476	7607476	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggcccccgctccgacttcGacatggcctatgagcgtggc	13	15	0	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7607476	A	A	7607476	3	1	119	1	0	0	0	0	1	0	0	0	12264	1058	37	4	1355	4	PNPLA6	19	7607476	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	1887454	7607476	51521507	270	112485											
LRRC8E	80131	broad.mit.edu	37	chr19	7964661	7964661	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcaatgccgcgggccgGctggagctggccctctgcat	15	15	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7964661	A	A	7964661	2	1	119	1	0	0	0	0	0	0	0	1	9112	1190	42	4		4	LRRC8E	19	7964661	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	357185	7964661	51164322	271	112486											
MYO1F	4542	broad.mit.edu	37	chr19	8587234	8587234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcttaccactcccctcaCcccagcttctgccctggtac	6	19	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8587234	A	A	8587234	1	1	119	0	1	0	0	0	0	0	0	0	10167	522	18	3		3	MYO1F	19	8587234	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	622573	8587234	50541749	272	112487											
MUC16	94025	broad.mit.edu	37	chr19	9048804	9048804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagttgtactagtcactgCcctagaactagtgaccagag	9	9	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9048804	A	A	9048804	3	1	119	1	0	0	0	0	1	0	0	0	10067	739	26	3	11016	3	MUC16	19	9048804	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	461570	9048804	50080179	273	112488											
UNC13A	23025	broad.mit.edu	37	chr19	17729678	17729678	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccacatgagtttgggggGcagtccctcacgccataatc	11	12	1	1	rs56145097		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17729678	A	A	17729678	1	1	119	0	1	0	0	0	0	0	0	0	17110	1218	42	4		4	UNC13A	19	17729678	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	8680874	17729678	41399305	274	112489											
IL12RB1	3594	broad.mit.edu	37	chr19	18174823	18174823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctgcacgggatgctctGcagtgggagaggcaaccctg	17	10	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18174823	T	T	18174823	1	4	119	0	1	0	0	0	0	0	0	0	7696	1334	46	3		3	IL12RB1	19	18174823	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	445145	18174823	40954160	275	112490											
PDE4C	5143	broad.mit.edu	37	chr19	18329147	18329147	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtcatggcgcagtacctcGagggcgggcgtagccagcag	16	12	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18329147	A	A	18329147	2	1	119	1	0	0	0	0	0	0	0	1	11735	1045	37	4		4	PDE4C	19	18329147	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	154324	18329147	40799836	276	112491											
DDX49	54555	broad.mit.edu	37	chr19	19035126	19035126	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgatgaagcaggtgaggccAccctggggcccgccagcctc	14	14	0	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19035126	C	C	19035126	1	2	119	0	1	0	0	0	0	0	0	0	4399	174	6	5		5	DDX49	19	19035126	Intron	SNP	A	TCGA-44-5643-01A-01D-1625-08	705979	19035126	40093857	277	112492											
WDR62	284403	broad.mit.edu	37	chr19	36590345	36590345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttggccttccacgccaaGcgcagctaccagccccacgg	11	18	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36590345	T	T	36590345	3	4	119	1	0	0	0	0	1	0	0	0	17440	962	34	3	2651	3	WDR62	19	36590345	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	17555219	36590345	22538638	278	112493											
PSG7	5676	broad.mit.edu	37	chr19	43430783	43430783	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtaggtgtagttctcactCttaggttcacaggtgaaggt	12	6	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43430783	G	G	43430783	3	3	119	1	0	0	0	0	1	0	0	0	12766	912	32	4	476	4	PSG7	19	43430783	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	6840438	43430783	15698200	279	112494											
ZC3H4	23211	broad.mit.edu	37	chr19	47597309	47597309	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgagtcatctgagaagtcaGagaagtcatcgctagaagaa	11	8	4	4			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47597309	C	C	47597309	3	2	119	1	0	0	0	0	1	0	0	0	17696	942	33	4	3549	4	ZC3H4	19	47597309	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	4166526	47597309	11531674	280	112495											
ZNF765	91661	broad.mit.edu	37	chr19	53913178	53913178	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcattttacaaatgtaatGattgtcaccaagtcttgagt	7	7	2	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53913178	A	A	53913178	1	1	119	0	1	0	0	0	0	0	0	0	18268	1305	45	4		4	ZNF765	19	53913178	3'UTR	SNP	G	TCGA-44-5643-01A-01D-1625-08	6315869	53913178	5215805	281	112496											
KIR3DL1	3811	broad.mit.edu	37	chr19	55331433	55331433	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaccccctatcagttgtcAgctcccagtgatcccctgga	7	17	2	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55331433	T	T	55331433	2	4	119	1	0	0	0	0	0	0	0	1	8391	175	7	5		5	KIR3DL1	19	55331433	Silent	SNP	A	TCGA-44-5643-01A-01D-1625-08	1418255	55331433	3797550	282	112497											
GALP	85569	broad.mit.edu	37	chr19	56688495	56688495	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgatggctcctccctccgtCcccctggtcctcctcctcgt	7	21	0	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56688495	T	T	56688495	2	4	119	1	0	0	0	0	0	0	0	1	6288	842	30	4		4	GALP	19	56688495	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	1357062	56688495	2440488	283	112498											
SLC24A3	57419	broad.mit.edu	37	chr20	19677462	19677462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaatcattggttacaccCtggggattcctgacgtcatc	8	12	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19677462	A	A	19677462	3	1	119	1	0	0	0	0	1	0	0	0	14581	680	24	2	1567	2	SLC24A3	20	19677462	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08		19677462	43348058	284	112499											
TM9SF4	9777	broad.mit.edu	37	chr20	30729763	30729763	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgagtcctgagcacttgggGccacagaaaaggtggggctc	15	10	0	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30729763	A	A	30729763	1	1	119	0	1	0	0	0	0	0	0	0	16103	1218	42	4		4	TM9SF4	20	30729763	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	11052301	30729763	32295757	285	112500											
BPIL3	128859	broad.mit.edu	37	chr20	31621831	31621831	+	Intron	DEL	T	-	-													gattcatgtccagccttttgTtttgcatttcataatggccc					rs112771934		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31621831	-	-	31621831	6	5	119	0	1	1	0	1	0	0	0	0	1502	1740	60	0		0	BPIL3	20	31621831	Intron	DEL	T	TCGA-44-5643-01A-01D-1625-08	892068	31621831	31403689	286	112501											
C20orf132	140699	broad.mit.edu	37	chr20	35751846	35751846	+	Intron	DEL	A	-	-													aaaaccaaagatagccaatgAaagctcagaatgattcctgg							TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35751846	-	-	35751846	6	5	119	0	1	1	0	1	0	0	0	0	2108	261	9	0		0	C20orf132	20	35751846	Intron	DEL	A	TCGA-44-5643-01A-01D-1625-08	4130015	35751846	27273674	287	112502											
TPTE	7179	broad.mit.edu	37	chr21	10909557	10909557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccaaattagacctccccGcaggaaacctgctcaggtag	8	13	1	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10909557	T	T	10909557	1	4	119	0	1	0	0	0	0	0	0	0	16554	1102	38	3		3	TPTE	21	10909557	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08		10909557	37220338	288	112503											
SAMSN1	64092	broad.mit.edu	37	chr21	15918655	15918655	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaacagtcagcagtgtGctgtctaatgcacagcatca	9	10	3	1			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15918655	T	T	15918655	1	4	119	0	1	0	0	0	0	0	0	0	13941	1334	46	3		3	SAMSN1	21	15918655	5'UTR	SNP	G	TCGA-44-5643-01A-01D-1625-08	5009098	15918655	32211240	289	112504											
TMPRSS2	7113	broad.mit.edu	37	chr21	42839625	42839625	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggctttggctcgaggaatCggagaacacagtcagaagga	14	8	1	2			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42839625	T	T	42839625	1	4	119	0	1	0	0	0	0	0	0	0	16370	899	31	4		4	TMPRSS2	21	42839625	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	26920970	42839625	5290270	290	112505											
PIWIL3	440822	broad.mit.edu	37	chr22	25158424	25158424	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttggtagctctccctgcGgcgggctctgcctcgggcgc	15	14	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25158424	A	A	25158424	3	1	119	1	0	0	0	0	1	0	0	0	12054	1116	39	4	2685	4	PIWIL3	22	25158424	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08		25158424	26146142	291	112506											
CRYBA4	1413	broad.mit.edu	37	chr22	27024419	27024419	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtattcaaggctctacctGgcaggggaggggctactggg	17	8	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27024419	A	A	27024419	1	1	119	0	1	0	0	0	0	0	0	0	3941	1363	47	4		4	CRYBA4	22	27024419	Intron	SNP	G	TCGA-44-5643-01A-01D-1625-08	1865995	27024419	24280147	292	112507											
FAM48B2	170067	broad.mit.edu	37	chrX	24332300	24332300	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctctggcttcctgggcgcGaggctcactcgctgcacttc	11	15	2	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24332300	T	T	24332300	1	4	119	0	1	0	0	0	0	0	0	0	5625	1073	37	3		3	FAM48B2	23	24332300	5'Flank	SNP	G	TCGA-44-5643-01A-01D-1625-08		24332300	130938260	293	112508											
UBA1	7317	broad.mit.edu	37	chrX	47062565	47062565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgacgggcaagtggctgtGtttggctcagacctgcaaga	14	8	1	3			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47062565	T	T	47062565	2	4	119	1	0	0	0	0	0	0	0	1	16953	1364	48	3		3	UBA1	23	47062565	Silent	SNP	G	TCGA-44-5643-01A-01D-1625-08	22730265	47062565	108207995	294	112509											
ERAS	3266	broad.mit.edu	37	chrX	48687962	48687962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggggccctcaccccgcCcagccccttgtcctcgtggg	11	20	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48687962	A	A	48687962	2	1	119	1	0	0	0	0	0	0	0	1	5247	610	22	2		2	ERAS	23	48687962	Silent	SNP	C	TCGA-44-5643-01A-01D-1625-08	1625397	48687962	106582598	295	112510											
GAGE12J	729396	broad.mit.edu	37	chrX	49230970	49230970	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagggtgtctgtttccaCagtatcatactgtaactctt	8	8	3	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49230970	T	T	49230970	1	4	119	0	1	0	0	0	0	0	0	0	6249	493	17	4		4	GAGE12J	23	49230970	Intron	SNP	C	TCGA-44-5643-01A-01D-1625-08	543008	49230970	106039590	296	112511											
FOXR2	139628	broad.mit.edu	37	chrX	55650322	55650322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgaagcccccagaaatgCctcagaagaggagacccagt	10	11	1	5			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55650322	A	A	55650322	3	1	119	1	0	0	0	0	1	0	0	0	6092	739	26	3	180	3	FOXR2	23	55650322	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	6419352	55650322	99620238	297	112512											
HEPH	9843	broad.mit.edu	37	chrX	65475972	65475972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatagtggcctggtggggcCcttggctatctgccaaaagg	15	9	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65475972	A	A	65475972	3	1	119	1	0	0	0	0	1	0	0	0	7121	623	22	2	2924	2	HEPH	23	65475972	Missense_Mutation	SNP	C	TCGA-44-5643-01A-01D-1625-08	9825650	65475972	89794588	298	112513											
PCDH11X	27328	broad.mit.edu	37	chrX	91133833	91133833	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagaaaacaggcagatgaTaatgatgaagaaaaagaaaa	9	5	0	7			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91133833	C	C	91133833	3	2	119	1	0	0	0	0	1	0	0	0	11602	1406	49	5	2600	5	PCDH11X	23	91133833	Missense_Mutation	SNP	T	TCGA-44-5643-01A-01D-1625-08	25657861	91133833	64136727	299	112514											
ACTRT1	139741	broad.mit.edu	37	chrX	127185968	127185968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccagtccacgctcaatgGggtagtgcaaatgtagggcc	12	10	1	0			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127185968	T	T	127185968	3	4	119	1	0	0	0	0	1	0	0	0	218	1232	43	2	916	2	ACTRT1	23	127185968	Missense_Mutation	SNP	G	TCGA-44-5643-01A-01D-1625-08	36052135	127185968	28084592	300	112515											
AGRN	375790	broad.mit.edu	37	chr1	984830	984830	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacccgaggaccaggctgccGtgtgagtcccttggagggtg	16	11	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	984830	A	A	984830	3	1	120	1	0	0	0	0	1	0	0	0	397	1159	40	4	4611	4	AGRN	1	984830	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08		984830	248265791	1	112516											
DFFA	1676	broad.mit.edu	37	chr1	10532457	10532457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgcggcgcagcagacacGgctttagagtccggatctcg	14	11	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10532457	T	T	10532457	3	4	120	1	0	0	0	0	1	0	0	0	4492	1116	39	1	984	1	DFFA	1	10532457	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	9547627	10532457	238718164	2	112517											
CROCC	9696	broad.mit.edu	37	chr1	17181839	17181839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttagggtatgtgccattgGggctcagggcatatgtggga	18	5	1	0	rs138742267	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17181839	A	A	17181839	1	1	120	0	1	0	0	0	0	0	0	0	3925	1247	43	4		4	CROCC	1	17181839	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08	6649382	17181839	232068782	3	112518											
EIF2C1	26523	broad.mit.edu	37	chr1	36383924	36383924	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgtctctatacagaTtgggaagagtggtaacatcc	11	6	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36383924	C	C	36383924	3	2	120	1	0	0	0	0	1	0	0	0	5045	1507	52	5	2231	5	EIF2C1	1	36383924	Missense_Mutation	SNP	T	TCGA-44-5645-01A-01D-1625-08	19202085	36383924	212866697	4	112519											
MANEAL	149175	broad.mit.edu	37	chr1	38260316	38260316	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccagacgacttgggctcCagcttctacccggagctggg	12	16	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38260316	G	G	38260316	2	3	120	1	0	0	0	0	0	0	0	1	9314	581	21	4		4	MANEAL	1	38260316	Silent	SNP	C	TCGA-44-5645-01A-01D-1625-08	1876392	38260316	210990305	5	112520											
CYP4B1	1580	broad.mit.edu	37	chr1	47279869	47279869	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcagtgacactctgtgCttttggttcagaccaggtca	11	11	3	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47279869	T	T	47279869	1	4	120	0	1	0	0	0	0	0	0	0	4218	812	28	4		4	CYP4B1	1	47279869	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	9019553	47279869	201970752	6	112521											
HOOK1	51361	broad.mit.edu	37	chr1	60326035	60326035	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaactgaaaatcttggtgAttttattaccgagccataaa	7	6	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60326035	T	T	60326035	1	4	120	0	1	0	0	0	0	0	0	0	7349	348	12	5		5	HOOK1	1	60326035	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	13046166	60326035	188924586	7	112522											
INADL	10207	broad.mit.edu	37	chr1	62455859	62455859	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaatcagacaaagataTgcagatctgcctggagaact	9	7	2	4			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62455859	A	A	62455859	4	1	120	1	0	0	0	0	0	1	0	0	7801	1471	51	5	3796	5	INADL	1	62455859	Nonsense_Mutation	SNP	T	TCGA-44-5645-01A-01D-1625-08	2129824	62455859	186794762	8	112523											
SLC44A5	204962	broad.mit.edu	37	chr1	75685034	75685034	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgatgtcgccaagaaactgaAtaaactccattaaggataaa	7	8	0	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75685034	G	G	75685034	1	3	120	0	1	0	0	0	0	0	0	0	14753	116	4	5		5	SLC44A5	1	75685034	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	13229175	75685034	173565587	9	112524											
PDE4DIP	9659	broad.mit.edu	37	chr1	144918885	144918885	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttaggtgctggatgtttTgttcctgggttcgaatctca	13	6	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144918885	C	C	144918885	3	2	120	1	0	0	0	0	1	0	0	0	11737	1812	63	5	5889	5	PDE4DIP	1	144918885	Missense_Mutation	SNP	T	TCGA-44-5645-01A-01D-1625-08	69233851	144918885	104331736	10	112525											
NBPF10	100132406	broad.mit.edu	37	chr1	145492440	145492440	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactggctgcttgggaagtcGtaaattactgtgaaacagag	12	6	0	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145492440	A	A	145492440	1	1	120	0	1	0	0	0	0	0	0	0	10287	1160	40	4		4	NBPF10	1	145492440	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08	573555	145492440	103758181	11	112526											
LOC200030	200030	broad.mit.edu	37	chr1	148253044	148253044	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgtgggtaaaatgtccctAttctagtagatcgttatccc	8	9	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148253044	T	T	148253044	1	4	120	0	1	0	0	0	0	0	0	0	8950	464	16	5		5	LOC200030	1	148253044	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	2760604	148253044	100997577	12	112527											
ITLN1	55600	broad.mit.edu	37	chr1	160849029	160849030	+	Intron	DEL	CT	-	-													gtcataccacactcaacacaCtcacacataccaacacacac					rs3766358	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160849030	-	-	160849029	6	5	120	0	1	1	0	1	0	0	0	0	7980	580	20	0		0	ITLN1	1	160849029	Intron	DEL	CT	TCGA-44-5645-01A-01D-1625-08	12595985	160849029	88401592	13	112528											
SDHC	6391	broad.mit.edu	37	chr1	161326722	161326722	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttactgggtttagtgctgttCttttttttttttcccaagag	8	6	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161326722	T	T	161326722	1	4	120	0	1	0	0	0	0	0	0	0	14079	928	32	4		4	SDHC	1	161326722	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	477693	161326722	87923899	14	112529											
LBR	3930	broad.mit.edu	37	chr1	225600352	225600352	+	Intron	DEL	A	-	-													ataaaagcatagaatcctttAaaaaaaaaaaaaaaaggaag							TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	225600352	-	-	225600352	6	5	120	0	1	1	0	1	0	0	0	0	8724	377	13	0		0	LBR	1	225600352	Intron	DEL	A	TCGA-44-5645-01A-01D-1625-08	64273630	225600352	23650269	15	112530											
EDARADD	128178	broad.mit.edu	37	chr1	236590675	236590676	+	Intron	INS	-	T	T													tttgtttctttctttctttcINStttttttttttcctagctga							TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236590676	T	T	236590675	6	5	120	0	1	1	1	0	0	0	0	0	4946	928	32	0		0	EDARADD	1	236590675	Intron	INS	-	TCGA-44-5645-01A-01D-1625-08	10990323	236590675	12659946	16	112531											
ZNF638	27332	broad.mit.edu	37	chr2	71660180	71660180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagctgacatcgcgccactGccctccaacctggatgacag	10	15	0	3			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71660180	T	T	71660180	1	4	120	0	1	0	0	0	0	0	0	0	18182	1334	46	3		3	ZNF638	2	71660180	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08		71660180	171539193	17	112532											
PSMD1	5707	broad.mit.edu	37	chr2	231927201	231927201	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtttgaactagacctgtActtcctaatttctttcagag	6	9	2	3			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231927201	G	G	231927201	1	3	120	0	1	0	0	0	0	0	0	0	12798	406	14	5		5	PSMD1	2	231927201	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	160267021	231927201	11272172	18	112533											
SUMF1	285362	broad.mit.edu	37	chr3	4458778	4458778	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagcctcagttctcagcaGctgccaccctcctgcagagg	12	15	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4458778	A	A	4458778	1	1	120	0	1	0	0	0	0	0	0	0	15503	986	34	4		4	SUMF1	3	4458778	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08		4458778	193563652	19	112534											
BRPF1	7862	broad.mit.edu	37	chr3	9780966	9780966	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtcatcctcttctgtgacAtgtgcaacctggccgtgcac	9	13	3	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9780966	G	G	9780966	3	3	120	1	0	0	0	0	1	0	0	0	1529	217	8	5	889	5	BRPF1	3	9780966	Missense_Mutation	SNP	A	TCGA-44-5645-01A-01D-1625-08	5322188	9780966	188241464	20	112535											
SCN5A	6331	broad.mit.edu	37	chr3	38592973	38592973	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagtctgaggatgcggccTattcgggccaggcggatgac	15	10	2	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38592973	A	A	38592973	2	1	120	1	0	0	0	0	0	0	0	1	14035	1512	53	5		5	SCN5A	3	38592973	Silent	SNP	T	TCGA-44-5645-01A-01D-1625-08	28812007	38592973	159429457	21	112536											
GNL3	26354	broad.mit.edu	37	chr3	52724467	52724467	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttttgtatttttagtagaGacggggttttatcgtgttag	11	2	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52724467	C	C	52724467	1	2	120	0	1	0	0	0	0	0	0	0	6601	957	33	4		4	GNL3	3	52724467	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08	14131494	52724467	145297963	22	112537											
EPHA3	2042	broad.mit.edu	37	chr3	89462377	89462377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagtttgccaaggaattgGatgccaccaacatatccatt	8	9	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89462377	T	T	89462377	3	4	120	1	0	0	0	0	1	0	0	0	5210	1174	41	3	1913	3	EPHA3	3	89462377	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	36737910	89462377	108560053	23	112538											
MINA	84864	broad.mit.edu	37	chr3	97666318	97666318	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccccaaagagagaaagCcgaccttcaaaaaaggaaac	7	10	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97666318	T	T	97666318	1	4	120	0	1	0	0	0	0	0	0	0	9679	754	26	4		4	MINA	3	97666318	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	8203941	97666318	100356112	24	112539											
C3orf17	25871	broad.mit.edu	37	chr3	112726994	112726994	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaacagaaaaagtaaagtaAcataatttttgcaatatacc	4	6	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112726994	C	C	112726994	1	2	120	0	1	0	0	0	0	0	0	0	2232	58	2	5		5	C3orf17	3	112726994	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	15060676	112726994	85295436	25	112540											
PIK3CA	5290	broad.mit.edu	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2	rs121913279		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178952085	G	G	178952085	3	3	120	1	0	0	0	0	1	0	0	0	12008	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-44-5645-01A-01D-1625-08	66225091	178952085	19070345	26	112541											
MXD4	10608	broad.mit.edu	37	chr4	2252432	2252432	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctctatgtccacttctaGggagaatagagtggggatgg	14	8	2	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2252432	C	C	2252432	1	2	120	0	1	0	0	0	0	0	0	0	10095	1015	35	4		4	MXD4	4	2252432	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08		2252432	188901844	27	112542											
TLR6	10333	broad.mit.edu	37	chr4	38830532	38830532	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaatttgtagactttctGtctcattttcttttatataa	4	6	4	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38830532	A	A	38830532	3	1	120	1	0	0	0	0	1	0	0	0	16078	1377	48	4	1831	4	TLR6	4	38830532	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	36578100	38830532	152323744	28	112543											
CEP135	9662	broad.mit.edu	37	chr4	56830457	56830457	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagattgagctaagagaacgAgagatagaacgactgtcagt	12	6	1	5			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56830457	C	C	56830457	2	2	120	1	0	0	0	0	0	0	0	1	3277	291	11	5		5	CEP135	4	56830457	Silent	SNP	A	TCGA-44-5645-01A-01D-1625-08	17999925	56830457	134323819	29	112544											
METAP1	23173	broad.mit.edu	37	chr4	99982307	99982307	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttgtttgttgaaggcGgatggcaggatgaaacctgg	15	4	0	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99982307	A	A	99982307	3	1	120	1	0	0	0	0	1	0	0	0	9579	1117	39	4	1042	4	METAP1	4	99982307	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	43151850	99982307	91171969	30	112545											
CAMK2D	817	broad.mit.edu	37	chr4	114530323	114530323	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacaaatcaaacaccaagTagtgaaagccctcttctgat	5	11	3	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114530323	C	C	114530323	3	2	120	1	0	0	0	0	1	0	0	0	2627	1638	57	5	1394	5	CAMK2D	4	114530323	Missense_Mutation	SNP	T	TCGA-44-5645-01A-01D-1625-08	14548016	114530323	76623953	31	112546											
SLC9A3	6550	broad.mit.edu	37	chr5	484613	484613	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggagggcgtggagaagctCgcgtgtgtgggagggactca	21	6	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	484613	T	T	484613	1	4	120	0	1	0	0	0	0	0	0	0	14827	899	31	4		4	SLC9A3	5	484613	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08		484613	180430647	32	112547											
LPCAT1	79888	broad.mit.edu	37	chr5	1481214	1481214	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcgctgcagccagggggaAgggaggagggtgctagagct	21	7	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1481214	C	C	1481214	1	2	120	0	1	0	0	0	0	0	0	0	8997	87	3	5		5	LPCAT1	5	1481214	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	996601	1481214	179434046	33	112548											
SKIV2L2	23517	broad.mit.edu	37	chr5	54701406	54701406	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaaggacgagtggcttgtGagataagcaggtaaaatctg	14	4	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54701406	T	T	54701406	4	4	120	1	0	0	0	0	0	1	0	0	14473	1291	45	3	2721	3	SKIV2L2	5	54701406	Nonsense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	53220192	54701406	126213854	34	112549											
MAN2A1	4124	broad.mit.edu	37	chr5	109091091	109091091	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttatgcctgatgaagctActccacattattttgcctta	8	9	0	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109091091	G	G	109091091	3	3	120	1	0	0	0	0	1	0	0	0	9306	391	14	5	787	5	MAN2A1	5	109091091	Missense_Mutation	SNP	A	TCGA-44-5645-01A-01D-1625-08	54389685	109091091	71824169	35	112550											
CYFIP2	26999	broad.mit.edu	37	chr5	156787321	156787321	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattctccagtatgtgaaaaCactgatagaggtgatgccca	9	9	1	4			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156787321	T	T	156787321	3	4	120	1	0	0	0	0	1	0	0	0	4171	478	17	4	2943	4	CYFIP2	5	156787321	Missense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	47696230	156787321	24127939	36	112551											
ODZ2	57451	broad.mit.edu	37	chr5	167642247	167642247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcggggatggagggaagGccatagatgcaaccctgatg	17	8	0	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167642247	T	T	167642247	3	4	120	1	0	0	0	0	1	0	0	0	10930	1203	42	3	4103	3	ODZ2	5	167642247	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	10854926	167642247	13273013	37	112552											
HLA-G	3135	broad.mit.edu	37	chr6	29896314	29896314	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgtagtcactggagctGtggtttctgctgtgatgtgc	15	7	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29896314	A	A	29896314	1	1	120	0	1	0	0	0	0	0	0	0	7279	1392	48	4		4	HLA-G	6	29896314	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08		29896314	141218753	38	112553											
COL19A1	1310	broad.mit.edu	37	chr6	70909299	70909299	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgatatattattttttctTctatacatgaagagaggatg	7	3	2	3			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70909299	A	A	70909299	1	1	120	0	1	0	0	0	0	0	0	0	3708	1798	62	5		5	COL19A1	6	70909299	Intron	SNP	T	TCGA-44-5645-01A-01D-1625-08	41012985	70909299	100205768	39	112554											
FERD3L	222894	broad.mit.edu	37	chr7	19184591	19184591	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacagccttttctcgtaaGcaaacgtgggcaccttcctc	10	13	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19184591	A	A	19184591	3	1	120	1	0	0	0	0	1	0	0	0	5873	971	34	4	109	4	FERD3L	7	19184591	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08		19184591	139954072	40	112555											
ZMIZ2	83637	broad.mit.edu	37	chr7	44806175	44806175	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagcgagcttaggacctacGggtgaactggccttcagtcc	12	12	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44806175	A	A	44806175	2	1	120	1	0	0	0	0	0	0	0	1	17823	1103	39	4		4	ZMIZ2	7	44806175	Silent	SNP	G	TCGA-44-5645-01A-01D-1625-08	25621584	44806175	114332488	41	112556											
AP4M1	9179	broad.mit.edu	37	chr7	99702385	99702385	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcttgaacctgggaggTggaggttgcagtgagccgag	17	6	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99702385	G	G	99702385	1	3	120	0	1	0	0	0	0	0	0	0	755	1711	59	5		5	AP4M1	7	99702385	Intron	SNP	T	TCGA-44-5645-01A-01D-1625-08	54896210	99702385	59436278	42	112557											
CUX1	1523	broad.mit.edu	37	chr7	101801866	101801866	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagattgaaatgatcatgaCggaccttgaaagggcaaacc	11	8	1	5			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101801866	T	T	101801866	3	4	120	1	0	0	0	0	1	0	0	0	4097	536	19	4	802	4	CUX1	7	101801866	Missense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	2099481	101801866	57336797	43	112558											
LAMB1	3912	broad.mit.edu	37	chr7	107626714	107626714	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagttgaaatgcctggaaacGaggcctcacagtcataggcg	12	10	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107626714	A	A	107626714	3	1	120	1	0	0	0	0	1	0	0	0	8682	1059	37	4	4958	4	LAMB1	7	107626714	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	5824848	107626714	51511949	44	112559											
NKAIN3	286183	broad.mit.edu	37	chr8	63502385	63502385	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcttttaaagtacactttAaaatgagtacacttctaagt	5	6	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63502385	T	T	63502385	1	4	120	0	1	0	0	0	0	0	0	0	10532	377	13	5		5	NKAIN3	8	63502385	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08		63502385	82861637	45	112560											
SLC24A2	25769	broad.mit.edu	37	chr9	19786259	19786259	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaattgtgcctatgccaacGttgctgtgagcgataaatac	9	9	0	1	rs147285634	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19786259	A	A	19786259	2	1	120	1	0	0	0	0	0	0	0	1	14580	1136	40	4		4	SLC24A2	9	19786259	Silent	SNP	G	TCGA-44-5645-01A-01D-1625-08		19786259	121427172	46	112561											
CDKN2A	1029	broad.mit.edu	37	chr9	21971077	21971077	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcccggtgcagcaccaccAgcgtgtccaggaagccctcc	12	18	0	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21971077	G	G	21971077	3	3	120	1	0	0	0	0	1	0	0	0	3191	188	7	5	197	5	CDKN2A	9	21971077	Missense_Mutation	SNP	A	TCGA-44-5645-01A-01D-1625-08	2184818	21971077	119242354	47	112562											
FAM75A3	727830	broad.mit.edu	37	chr9	40701595	40701595	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagtgcagcatgctgcGgctgggctggggcagagagg	19	9	0	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40701595	A	A	40701595	1	1	120	0	1	0	0	0	0	0	0	0	5672	1131	39	4		4	FAM75A3	9	40701595	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08	18730518	40701595	100511836	48	112563											
UBQLN1	29979	broad.mit.edu	37	chr9	86276788	86276788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttgcaagtttgcttcacGgttcaaaaatcccattgcac	7	11	2	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86276788	T	T	86276788	3	4	120	1	0	0	0	0	1	0	0	0	17022	1116	39	1	89	1	UBQLN1	9	86276788	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	45575193	86276788	54936643	49	112564											
C9orf3	84909	broad.mit.edu	37	chr9	97522766	97522766	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagataaggaagacaggggCtcagacagctactgactttc	12	9	1	4			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97522766	T	T	97522766	3	4	120	1	0	0	0	0	1	0	0	0	2503	797	28	4	703	4	C9orf3	9	97522766	Missense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	11245978	97522766	43690665	50	112565											
RGS3	5998	broad.mit.edu	37	chr9	116356199	116356199	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccactgtctccctgctgcCatggtaacgaggaggccagt	11	14	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116356199	T	T	116356199	1	4	120	0	1	0	0	0	0	0	0	0	13415	609	21	4		4	RGS3	9	116356199	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	18833433	116356199	24857232	51	112566											
COL27A1	85301	broad.mit.edu	37	chr9	117071495	117071495	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaccctcggtgtggggggTgtggggggcagcctgagccg	22	9	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117071495	G	G	117071495	1	3	120	0	1	0	0	0	0	0	0	0	3717	1711	59	5		5	COL27A1	9	117071495	Intron	SNP	T	TCGA-44-5645-01A-01D-1625-08	715296	117071495	24141936	52	112567											
RBP3	5949	broad.mit.edu	37	chr10	48389514	48389514	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggacatatggggccaacAcacccaggacggaggcgtca	14	12	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48389514	G	G	48389514	3	3	120	1	0	0	0	0	1	0	0	0	13265	159	6	5	2395	5	RBP3	10	48389514	Missense_Mutation	SNP	A	TCGA-44-5645-01A-01D-1625-08		48389514	87145233	53	112568											
FOLH1	2346	broad.mit.edu	37	chr11	49178267	49178267	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agataatttgagattcacttAcccaatttttagtataccgt	5	7	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49178267	G	G	49178267	5	3	120	1	0	0	0	0	0	0	1	0	6037	405	14	5	647	5	FOLH1	11	49178267	Splice_Site	SNP	A	TCGA-44-5645-01A-01D-1625-08		49178267	85828249	54	112569											
AHNAK	79026	broad.mit.edu	37	chr11	62298187	62298187	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcatcaatgtccattttGggtcctttgatttcaacatc	9	9	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62298187	C	C	62298187	2	2	120	1	0	0	0	0	0	0	0	1	414	1335	47	4		4	AHNAK	11	62298187	Silent	SNP	G	TCGA-44-5645-01A-01D-1625-08	13119920	62298187	72708329	55	112570											
NXF1	10482	broad.mit.edu	37	chr11	62569570	62569570	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccagagcccttggggagGggcattacgctgggagtcca	16	10	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62569570	A	A	62569570	1	1	120	0	1	0	0	0	0	0	0	0	10877	1247	43	4		4	NXF1	11	62569570	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08	271383	62569570	72436946	56	112571											
CDC42EP2	10435	broad.mit.edu	37	chr11	65088480	65088480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcccaccgctgggggacttCcgccacaccattcatattgg	10	15	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65088480	A	A	65088480	3	1	120	1	0	0	0	0	1	0	0	0	3106	854	30	3	113	3	CDC42EP2	11	65088480	Missense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	2518910	65088480	69918036	57	112572											
GRM5	2915	broad.mit.edu	37	chr11	88780796	88780796	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgggcaagagtgtggggTctgaattgatcctttccagg	15	6	1	3			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88780796	C	C	88780796	3	2	120	1	0	0	0	0	1	0	0	0	6866	1667	58	5	3429	5	GRM5	11	88780796	Missense_Mutation	SNP	T	TCGA-44-5645-01A-01D-1625-08	23692316	88780796	46225720	58	112573											
PTPRO	5800	broad.mit.edu	37	chr12	15669681	15669681	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttctttttctaccccctGccctcttctttctagttccc	2	17	5	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15669681	A	A	15669681	1	1	120	0	1	0	0	0	0	0	0	0	12917	1334	46	4		4	PTPRO	12	15669681	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08		15669681	118182214	59	112574											
COL2A1	1280	broad.mit.edu	37	chr12	48383461	48383461	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgtggttgcacccaAtacaccctgcagactgcctt	9	14	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48383461	G	G	48383461	1	3	120	0	1	0	0	0	0	0	0	0	3719	116	4	5		5	COL2A1	12	48383461	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	32713780	48383461	85468434	60	112575											
ITGA5	3678	broad.mit.edu	37	chr12	54793313	54793313	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagggcaaggaaggggagcTggagtgctgggtcccattca	17	8	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54793313	A	A	54793313	1	1	120	0	1	0	0	0	0	0	0	0	7949	1595	55	5		5	ITGA5	12	54793313	Intron	SNP	T	TCGA-44-5645-01A-01D-1625-08	6409852	54793313	79058582	61	112576											
METTL1	4234	broad.mit.edu	37	chr12	58165040	58165040	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcctctggcttcacaggGctattggaaagaagacataa	9	9	3	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58165040	A	A	58165040	2	1	120	1	0	0	0	0	0	0	0	1	9586	1217	42	4		4	METTL1	12	58165040	Silent	SNP	G	TCGA-44-5645-01A-01D-1625-08	3371727	58165040	75686855	62	112577											
TRAFD1	10906	broad.mit.edu	37	chr12	112579878	112579879	+	Intron	INS	-	T	T													gtatcctgaatgttggttggINStttttttttttcagttgaag							TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112579879	T	T	112579878	6	5	120	0	1	1	1	0	0	0	0	0	16571	1276	44	0		0	TRAFD1	12	112579878	Intron	INS	-	TCGA-44-5645-01A-01D-1625-08	54414838	112579878	21272017	63	112578											
MED13L	23389	broad.mit.edu	37	chr12	116444229	116444229	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgactgtataataaaTtcagccaaacaaaacacatg	4	10	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116444229	C	C	116444229	1	2	120	0	1	0	0	0	0	0	0	0	9524	1508	52	5		5	MED13L	12	116444229	Intron	SNP	T	TCGA-44-5645-01A-01D-1625-08	3864351	116444229	17407666	64	112579											
PSMB11	122706	broad.mit.edu	37	chr14	23512132	23512132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtgcgggagagtggatGggagcatgtgtcacgcagtg	18	8	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23512132	T	T	23512132	3	4	120	1	0	0	0	0	1	0	0	0	12782	1357	47	2	700	2	PSMB11	14	23512132	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08		23512132	83837408	65	112580											
TECPR2	9895	broad.mit.edu	37	chr14	102964630	102964630	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacgcggaggggcccggcGtctgtggcgggcacaggggc	21	12	2	0	rs138500705	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102964630	A	A	102964630	1	1	120	0	1	0	0	0	0	0	0	0	15866	1160	40	4		4	TECPR2	14	102964630	3'UTR	SNP	G	TCGA-44-5645-01A-01D-1625-08	79452498	102964630	4384910	66	112581											
ATP8B4	79895	broad.mit.edu	37	chr15	50211114	50211114	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcaataacaccctcctGtaacttatcttctacagcag	4	12	3	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50211114	A	A	50211114	4	1	120	1	0	0	0	0	0	1	0	0	1201	1386	48	4	1661	4	ATP8B4	15	50211114	Nonsense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08		50211114	52320278	67	112582											
IGF1R	3480	broad.mit.edu	37	chr15	99486214	99486214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggagggaaagggctgCtgcccgtgcgctggatgtct	18	8	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99486214	A	A	99486214	3	1	120	1	0	0	0	0	1	0	0	0	7641	796	28	3	3594	3	IGF1R	15	99486214	Missense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	49275100	99486214	3045178	68	112583											
GRIN2A	2903	broad.mit.edu	37	chr16	9858195	9858195	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaggttccctgtggcacGtggcccgatttgacgtttct	12	11	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9858195	A	A	9858195	3	1	120	1	0	0	0	0	1	0	0	0	6845	1145	40	4	1192	4	GRIN2A	16	9858195	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08		9858195	80496558	69	112584											
SLC9A5	6553	broad.mit.edu	37	chr16	67298944	67298944	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctttcttggtcctcagaAggatggtgtggcgaatgctg	13	7	3	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67298944	C	C	67298944	3	2	120	1	0	0	0	0	1	0	0	0	14831	86	3	5	2069	5	SLC9A5	16	67298944	Missense_Mutation	SNP	A	TCGA-44-5645-01A-01D-1625-08	57440749	67298944	23055809	70	112585											
HYDIN	54768	broad.mit.edu	37	chr16	70996128	70996128	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaaggaaaaaaaaagatGaagaagagattcaccatacg	9	4	1	5			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70996128	A	A	70996128	1	1	120	0	1	0	0	0	0	0	0	0	7537	1305	45	4		4	HYDIN	16	70996128	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08	3697184	70996128	19358625	71	112586											
TP53	7157	broad.mit.edu	37	chr17	7573967	7573967	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggctccttcccagcctGggcatccttgagttccaagg	10	16	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7573967	A	A	7573967	4	1	120	1	0	0	0	0	0	1	0	0	16505	1357	47	4	129	4	TP53	17	7573967	Nonsense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08		7573967	73621243	72	112587											
CABLES1	91768	broad.mit.edu	37	chr18	20814573	20814573	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctgacttgtcctcccaggGacttgaagttggacggagga	13	10	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20814573	A	A	20814573	3	1	120	1	0	0	0	0	1	0	0	0	2555	1188	41	4	1162	4	CABLES1	18	20814573	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08		20814573	57262675	73	112588											
ZNF561	93134	broad.mit.edu	37	chr19	9724871	9724871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttcaaattaaacacaGcaataaaataaaagccagag	5	6	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9724871	A	A	9724871	1	1	120	0	1	0	0	0	0	0	0	0	18119	986	34	4		4	ZNF561	19	9724871	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08		9724871	49404112	74	112589											
CYP4F2	8529	broad.mit.edu	37	chr19	15996864	15996865	+	Splice_Site	INS	-	T	T													ctggccgtggtgtcatggccINStggggggcagcaaggcaggc							TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15996865	T	T	15996864	8	5	120	1	0	1	1	0	0	0	1	0	4221	695	24	0	597	0	CYP4F2	19	15996864	Splice_Site	INS	-	TCGA-44-5645-01A-01D-1625-08	6271993	15996864	43132119	75	112590											
CIB3	117286	broad.mit.edu	37	chr19	16284278	16284278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgaagactgtctgcttGttgcccatggtgtgaaccac	12	9	1	3			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16284278	T	T	16284278	3	4	120	1	0	0	0	0	1	0	0	0	3453	1368	48	3	578	3	CIB3	19	16284278	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	287414	16284278	42844705	76	112591											
UNC13A	23025	broad.mit.edu	37	chr19	17752381	17752381	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttctgccaccatgggagAgaaagtgtcatggagagtgc	15	7	2	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17752381	G	G	17752381	1	3	120	0	1	0	0	0	0	0	0	0	17110	319	11	5		5	UNC13A	19	17752381	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	1468103	17752381	41376602	77	112592											
IRF3	3661	broad.mit.edu	37	chr19	50167985	50167985	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccgtaggccgtgcttccaAgggatgcggaagcgcgtgcg	17	11	0	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50167985	G	G	50167985	2	3	120	1	0	0	0	0	0	0	0	1	7901	59	3	5		5	IRF3	19	50167985	Silent	SNP	A	TCGA-44-5645-01A-01D-1625-08	32415604	50167985	8960998	78	112593											
NOP56	10528	broad.mit.edu	37	chr20	2633826	2633826	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggggcccaggtatcaGcatattttaagagcttccaa	11	8	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2633826	A	A	2633826	1	1	120	0	1	0	0	0	0	0	0	0	10634	986	34	4		4	NOP56	20	2633826	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08		2633826	60391694	79	112594											
DEFB121	245934	broad.mit.edu	37	chr20	29992817	29992817	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacttagcctcagttttgcAtaatatatagtatacttcac	5	9	2	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29992817	G	G	29992817	3	3	120	1	0	0	0	0	1	0	0	0	4447	217	8	5	104	5	DEFB121	20	29992817	Missense_Mutation	SNP	A	TCGA-44-5645-01A-01D-1625-08	27358991	29992817	33032703	80	112595											
MYH7B	57644	broad.mit.edu	37	chr20	33587960	33587960	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctctgatgggccacaggcAgtcacaagagactttaaatc	10	10	2	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33587960	T	T	33587960	1	4	120	0	1	0	0	0	0	0	0	0	10134	203	7	5		5	MYH7B	20	33587960	Intron	SNP	A	TCGA-44-5645-01A-01D-1625-08	3595143	33587960	29437560	81	112596											
KRTAP21-1	337977	broad.mit.edu	37	chr21	32127545	32127592	+	In_Frame_Del	DEL	CCATAACCACAGCCATAATGGGAGCCAAACCCACAGCCATACCCACAG	-	-													atccacagccatagccagttCcataaccacagccataatgg					rs141546899		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32127592	-	-	32127545	7	5	120	1	0	1	0	1	0	0	0	0	8609	855	30	0	89	0	KRTAP21-1	21	32127545	In_Frame_Del	DEL	CCATAACCACAGCCATAATGGGAGCCAAACCCACAGCCATACCCACAG	TCGA-44-5645-01A-01D-1625-08		32127545	16002350	82	112597											
PI4KA	5297	broad.mit.edu	37	chr22	21083678	21083678	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttccactgcttctcactCaggctgatgtacttagatct	6	13	3	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21083678	G	G	21083678	2	3	120	1	0	0	0	0	0	0	0	1	11968	813	29	4		4	PI4KA	22	21083678	Silent	SNP	C	TCGA-44-5645-01A-01D-1625-08		21083678	30220888	83	112598											
NF2	4771	broad.mit.edu	37	chr22	30078944	30078944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagcattttgcagatggcaCttatggcattgttgatatca	9	7	1	2			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30078944	T	T	30078944	1	4	120	0	1	0	0	0	0	0	0	0	10452	580	20	4		4	NF2	22	30078944	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	8995266	30078944	21225622	84	112599											
SLC35E4	339665	broad.mit.edu	37	chr22	31042478	31042478	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagccactagccctgccCgaggggtccgggtaggcttc	15	14	0	0	rs141888812	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31042478	T	T	31042478	1	4	120	0	1	0	0	0	0	0	0	0	14701	667	23	4		4	SLC35E4	22	31042478	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	963534	31042478	20262088	85	112600											
EIF4ENIF1	56478	broad.mit.edu	37	chr22	31838889	31838889	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggctggtcagcgctcagGcccatgttttctccatcaca	9	14	5	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31838889	A	A	31838889	1	1	120	0	1	0	0	0	0	0	0	0	5077	1218	42	4		4	EIF4ENIF1	22	31838889	Intron	SNP	G	TCGA-44-5645-01A-01D-1625-08	796411	31838889	19465677	86	112601											
WBP2NL	164684	broad.mit.edu	37	chr22	42415801	42415801	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggaactattcaggcagctCcatatggtaagtgttccctc	10	10	1	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42415801	T	T	42415801	3	4	120	1	0	0	0	0	1	0	0	0	17387	855	30	4	317	4	WBP2NL	22	42415801	Missense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	10576912	42415801	8888765	87	112602											
TTLL12	23170	broad.mit.edu	37	chr22	43564118	43564118	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgcaggctcgctcacagtCggggttgaagttcacctcca	11	14	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43564118	T	T	43564118	3	4	120	1	0	0	0	0	1	0	0	0	16851	884	31	4	107	4	TTLL12	22	43564118	Missense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	1148317	43564118	7740448	88	112603											
GAGE12J	729396	broad.mit.edu	37	chrX	49237565	49237566	+	Intron	DEL	TG	-	-													tgttcgtgtgtgtgtgtgcaTgtgtgtgtgtgtgtgtgtgt					rs143152485		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49237566	-	-	49237565	6	5	120	0	1	1	0	1	0	0	0	0	6249	1479	51	0		0	GAGE12J	23	49237565	Intron	DEL	TG	TCGA-44-5645-01A-01D-1625-08		49237565	106032995	89	112604											
SLC7A3	84889	broad.mit.edu	37	chrX	70147953	70147953	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatacagcctgggcacaCactgtgcccaagccccaaac	8	17	0	0			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70147953	T	T	70147953	1	4	120	0	1	0	0	0	0	0	0	0	14812	493	17	4		4	SLC7A3	23	70147953	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	20910388	70147953	85122607	90	112605											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177431	89177431	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggatatgcttcaacagcGtagaaacgaccccatcattg	8	13	2	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177431	A	A	89177431	3	1	120	1	0	0	0	0	1	0	0	0	15950	1145	40	4	349	4	TGIF2LX	23	89177431	Missense_Mutation	SNP	G	TCGA-44-5645-01A-01D-1625-08	19029478	89177431	66093129	91	112606											
SLC25A43	203427	broad.mit.edu	37	chrX	118543989	118543989	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctaccaaaatatagcacaTtatcgcactcaagaaagttc	4	12	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118543989	A	A	118543989	1	1	120	0	1	0	0	0	0	0	0	0	14622	1508	52	5		5	SLC25A43	23	118543989	Intron	SNP	T	TCGA-44-5645-01A-01D-1625-08	29366558	118543989	36726571	92	112607											
SAGE1	55511	broad.mit.edu	37	chrX	134987534	134987534	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagctggtattccatccaTgagtaccagggatctgcgta	11	10	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134987534	C	C	134987534	3	2	120	1	0	0	0	0	1	0	0	0	13920	1464	51	5	451	5	SAGE1	23	134987534	Missense_Mutation	SNP	T	TCGA-44-5645-01A-01D-1625-08	16443545	134987534	20283026	93	112608											
MECP2	4204	broad.mit.edu	37	chrX	153357589	153357589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttaaaaaaaaaaaaaaCagatggccaaaccaggacat	5	6	0	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153357589	A	A	153357589	1	1	120	0	1	0	0	0	0	0	0	0	9516	493	17	3		3	MECP2	23	153357589	Intron	SNP	C	TCGA-44-5645-01A-01D-1625-08	18370055	153357589	1912971	94	112609											
TKTL1	8277	broad.mit.edu	37	chrX	153553709	153553709	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcttcattcggaccaccCgaccagaaactatggttatt	8	11	1	1			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153553709	T	T	153553709	4	4	120	1	0	0	0	0	0	1	0	0	16058	644	23	4	1380	4	TKTL1	23	153553709	Nonsense_Mutation	SNP	C	TCGA-44-5645-01A-01D-1625-08	196120	153553709	1716851	95	112610											
NPHP4	261734	broad.mit.edu	37	chr1	5987964	5987964	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctacgtgaaatcagaggCttcttgatgccacatgttct	9	9	4	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5987964	T	T	5987964	1	4	121	0	1	0	0	0	0	0	0	0	10676	812	28	4		4	NPHP4	1	5987964	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08		5987964	243262657	1	112611											
FBXO42	54455	broad.mit.edu	37	chr1	16632427	16632427	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctacacctaagacagaaaGagcaaacccttcagtccaga	8	12	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16632427	A	A	16632427	1	1	121	0	1	0	0	0	0	0	0	0	5808	957	33	4		4	FBXO42	1	16632427	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	10644463	16632427	232618194	2	112612											
PAX7	5081	broad.mit.edu	37	chr1	19027127	19027127	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggccgaggggtctccattCtctgctctccacctcccagg	10	17	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19027127	T	T	19027127	1	4	121	0	1	0	0	0	0	0	0	0	11578	928	32	4		4	PAX7	1	19027127	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2394700	19027127	230223494	3	112613											
HSPG2	3339	broad.mit.edu	37	chr1	22217022	22217022	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccagaggccttcacccCatcctcggtcctgccccgcc	8	22	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22217022	A	A	22217022	1	1	121	0	1	0	0	0	0	0	0	0	7500	609	21	2		2	HSPG2	1	22217022	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	3189895	22217022	227033599	4	112614											
UBXN11	91544	broad.mit.edu	37	chr1	26628188	26628188	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcggggcacacttaccatCtccatagatgcggattcctc	11	13	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26628188	T	T	26628188	3	4	121	1	0	0	0	0	1	0	0	0	17039	913	32	4	1517	4	UBXN11	1	26628188	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	4411166	26628188	222622433	5	112615											
SNIP1	79753	broad.mit.edu	37	chr1	38019714	38019714	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacggcggtgggcgggaggTgcgacttctgggctgagacg	22	8	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38019714	C	C	38019714	2	2	121	1	0	0	0	0	0	0	0	1	14962	1683	59	5		5	SNIP1	1	38019714	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	11391526	38019714	211230907	6	112616											
DNALI1	7802	broad.mit.edu	37	chr1	38030777	38030777	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaagctagtttcctgagtGaacaagccataacctcccct	6	12	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38030777	A	A	38030777	1	1	121	0	1	0	0	0	0	0	0	0	4699	1305	45	4		4	DNALI1	1	38030777	3'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	11063	38030777	211219844	7	112617											
GJA9	81025	broad.mit.edu	37	chr1	39340442	39340455	+	Frame_Shift_Del	DEL	GAGGTTACCTTTAG	-	-													ccctttctgaactggcccttGaggttacctttaggaggtga							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39340455	-	-	39340442	7	5	121	1	0	1	0	1	0	0	0	0	6470	1277	45	0	222	0	GJA9	1	39340442	Frame_Shift_Del	DEL	GAGGTTACCTTTAG	TCGA-44-6144-01A-11D-1753-08	1309665	39340442	209910179	8	112618											
NFIA	4774	broad.mit.edu	37	chr1	61554015	61554015	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcagaagtgggcatctcgActtctggcaaagttgcggaa	13	8	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61554015	T	T	61554015	2	4	121	1	0	0	0	0	0	0	0	1	10465	262	10	5		5	NFIA	1	61554015	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	22213573	61554015	187696606	9	112619											
DOCK7	85440	broad.mit.edu	37	chr1	63128798	63128798	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaacttcggctgccacCgttctacaatgaagaaagca	7	12	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63128798	A	A	63128798	2	1	121	1	0	0	0	0	0	0	0	1	4732	639	23	1		1	DOCK7	1	63128798	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	1574783	63128798	186121823	10	112620											
ARHGAP29	9411	broad.mit.edu	37	chr1	94667211	94667211	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgctgggattacaggtgtGagccaccatgccttgcctga	13	10	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94667211	A	A	94667211	1	1	121	0	1	0	0	0	0	0	0	0	880	1305	45	4		4	ARHGAP29	1	94667211	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	31538413	94667211	154583410	11	112621											
AGL	178	broad.mit.edu	37	chr1	100328036	100328036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaatgtaattatcctctGtgatatagatttcaaaagtt	5	4	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100328036	T	T	100328036	1	4	121	0	1	0	0	0	0	0	0	0	384	1392	48	3		3	AGL	1	100328036	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	5660825	100328036	148922585	12	112622											
VCAM1	7412	broad.mit.edu	37	chr1	101196759	101196759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgcgatttgcagcattcCctagagatccagaaatcgag	10	10	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101196759	A	A	101196759	3	1	121	1	0	0	0	0	1	0	0	0	17264	623	22	2	1232	2	VCAM1	1	101196759	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	868723	101196759	148053862	13	112623											
VAV3	10451	broad.mit.edu	37	chr1	108185290	108185290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagttcaacggtatccCcggcctggagctgtaaaggg	13	10	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108185290	A	A	108185290	3	1	121	1	0	0	0	0	1	0	0	0	17260	623	22	2	710	2	VAV3	1	108185290	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	6988531	108185290	141065331	14	112624											
SYT6	148281	broad.mit.edu	37	chr1	114682356	114682356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgtggctgatcttcacGgccgcctccaggaagcccag	13	14	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114682356	T	T	114682356	2	4	121	1	0	0	0	0	0	0	0	1	15597	1103	39	1		1	SYT6	1	114682356	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	6497066	114682356	134568265	15	112625											
NBPF9	400818	broad.mit.edu	37	chr1	144617312	144617312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagatctctgaagtacagcAgctcggcggggagaagtaag	15	7	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144617312	G	G	144617312	1	3	121	0	1	0	0	0	0	0	0	0	10294	203	7	5		5	NBPF9	1	144617312	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	29934956	144617312	104633309	16	112626											
PDE4DIP	9659	broad.mit.edu	37	chr1	144854708	144854708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaaggcctaaagcaccCtgtgctttgtggctctttcc	11	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144854708	A	A	144854708	1	1	121	0	1	0	0	0	0	0	0	0	11737	696	24	2		2	PDE4DIP	1	144854708	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	237396	144854708	104395913	17	112627											
PDE4DIP	9659	broad.mit.edu	37	chr1	144951923	144951923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgccagatacttagcccGgtatctggcatgtggcatgc	11	11	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144951923	T	T	144951923	1	4	121	0	1	0	0	0	0	0	0	0	11737	1131	39	1		1	PDE4DIP	1	144951923	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	97215	144951923	104298698	18	112628											
PIAS3	10401	broad.mit.edu	37	chr1	145581138	145581138	+	Intron	SNP	C	G	G													taccaactcctgggcttcctCcagccttgctgaccccatgg							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145581138	G	G	145581138	1	3	121	0	1	0	0	0	0	0	0	0	11972	870	30	4		4	PIAS3	1	145581138	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	629215	145581138	103669483	19	112629	492	2									
PIAS3	10401	broad.mit.edu	37	chr1	145581146	145581146	+	Intron	SNP	G	T	T													cctgggcttcctccagccttGctgaccccatggctctggcc							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145581146	T	T	145581146	1	4	121	0	1	0	0	0	0	0	0	0	11972	1334	46	3		3	PIAS3	1	145581146	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	8	145581146	103669475	20	112630	492	2									
OTUD7B	56957	broad.mit.edu	37	chr1	149936267	149936267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcccgatcatggaaaccCcacattcctgtggcaaaaaa	7	12	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149936267	A	A	149936267	3	1	121	1	0	0	0	0	1	0	0	0	11413	624	22	2	1947	2	OTUD7B	1	149936267	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	4355121	149936267	99314354	21	112631											
RPTN	126638	broad.mit.edu	37	chr1	152128887	152128887	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaattggtttttcacaccGatttaaggcaaagatatgtc	8	7	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152128887	T	T	152128887	2	4	121	1	0	0	0	0	0	0	0	1	13775	1057	37	3		3	RPTN	1	152128887	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	2192620	152128887	97121734	22	112632											
DCST1	149095	broad.mit.edu	37	chr1	155011919	155011920	+	Missense_Mutation	DNP	CT	AG	AG													gggacctcccctcacatccgCtgtgccagcctcctactagt							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	155011920	AG	AG	155011919	3	1	121	1	0	0	0	0	1	0	0	0	4335	784	28	3	317	3	DCST1	1	155011919	Missense_Mutation	DNP	CT	TCGA-44-6144-01A-11D-1753-08	2883032	155011919	94238702	23	112633											
SMG5	23381	broad.mit.edu	37	chr1	156237303	156237303	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacataaggcagatgatgaCcatttgaaagatgagaaggt	11	5	0	6			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156237303	G	G	156237303	3	3	121	1	0	0	0	0	1	0	0	0	14910	507	18	4	2027	4	SMG5	1	156237303	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	1225384	156237303	93013318	24	112634											
TTC24	164118	broad.mit.edu	37	chr1	156555750	156555750	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccatctaggtccaggacCcagggcccatcttccatttg	8	15	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156555750	T	T	156555750	3	4	121	1	0	0	0	0	1	0	0	0	16818	623	22	4	1614	4	TTC24	1	156555750	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	318447	156555750	92694871	25	112635											
NES	10763	broad.mit.edu	37	chr1	156643273	156643273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagggaagtcttggagcCaccgccaggtgtttgcagcc	15	11	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156643273	A	A	156643273	3	1	121	1	0	0	0	0	1	0	0	0	10432	594	21	2	3918	2	NES	1	156643273	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	87523	156643273	92607348	26	112636											
FCRL4	83417	broad.mit.edu	37	chr1	157556159	157556159	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccctgtgccttcagccaCggagcagacaaggaccagca	10	15	1	1	rs142198646		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157556159	T	T	157556159	3	4	121	1	0	0	0	0	1	0	0	0	5854	536	19	4	641	4	FCRL4	1	157556159	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	912886	157556159	91694462	27	112637											
FCRL2	79368	broad.mit.edu	37	chr1	157737280	157737280	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaggagacctgagggtgagGacagggcgagacactggaac	17	9	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157737280	A	A	157737280	2	1	121	1	0	0	0	0	0	0	0	1	5852	1161	41	4		4	FCRL2	1	157737280	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	181121	157737280	91513341	28	112638											
SPTA1	6708	broad.mit.edu	37	chr1	158588981	158588981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaatggtggtggcacagGggtcatggtttgggatgtag	19	4	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158588981	T	T	158588981	1	4	121	0	1	0	0	0	0	0	0	0	15234	1247	43	2		2	SPTA1	1	158588981	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	851701	158588981	90661640	29	112639											
SPTA1	6708	broad.mit.edu	37	chr1	158639071	158639071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcattgcccttttctgagCctctgttttgtcatctataa	5	10	5	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158639071	A	A	158639071	1	1	121	0	1	0	0	0	0	0	0	0	15234	754	26	3		3	SPTA1	1	158639071	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	50090	158639071	90611550	30	112640											
CADM3	57863	broad.mit.edu	37	chr1	159161612	159161612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttacgggtacacagagaCcttgtgtacacaagggcctt	10	11	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159161612	A	A	159161612	1	1	121	0	1	0	0	0	0	0	0	0	2594	522	18	3		3	CADM3	1	159161612	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	522541	159161612	90089009	31	112641											
CASQ1	844	broad.mit.edu	37	chr1	160163610	160163610	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgatggcgagttttctgcTgacaccatcgtggagtttct	11	9	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160163610	C	C	160163610	2	2	121	1	0	0	0	0	0	0	0	1	2706	1567	55	5		5	CASQ1	1	160163610	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	1001998	160163610	89087011	32	112642											
PVRL4	81607	broad.mit.edu	37	chr1	161043035	161043035	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcacagagcagctactgtTgtccttgagactatcagggt	10	10	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161043035	A	A	161043035	3	1	121	1	0	0	0	0	1	0	0	0	12950	1812	63	5	252	5	PVRL4	1	161043035	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	879425	161043035	88207586	33	112643											
GPR161	23432	broad.mit.edu	37	chr1	168055036	168055036	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgagttcttggcagcttcTgagggagaaggcagaaaaaa	13	6	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168055036	C	C	168055036	1	2	121	0	1	0	0	0	0	0	0	0	6730	1594	55	5		5	GPR161	1	168055036	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	7012001	168055036	81195585	34	112644											
FMO2	2327	broad.mit.edu	37	chr1	171168730	171168730	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccaatcctcattaactaGttggttggtagcgcattgtg	10	9	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171168730	A	A	171168730	1	1	121	0	1	0	0	0	0	0	0	0	6013	1044	36	4		4	FMO2	1	171168730	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	3113694	171168730	78081891	35	112645											
FMO2	2327	broad.mit.edu	37	chr1	171178146	171178146	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagaaatgccatcttcacCcagaaacaaagaatactgaa	6	11	2	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171178146	T	T	171178146	1	4	121	0	1	0	0	0	0	0	0	0	6013	638	22	4		4	FMO2	1	171178146	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	9416	171178146	78072475	36	112646											
FMO1	2326	broad.mit.edu	37	chr1	171252449	171252450	+	Intron	INS	-	A	A													aaaaaaaggaaatgaaaaagINSaaaaaaaaacaatagcagag					rs149740020	by1000genomes	TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171252450	A	A	171252449	6	5	121	0	1	1	1	0	0	0	0	0	6012	957	33	0		0	FMO1	1	171252449	Intron	INS	-	TCGA-44-6144-01A-11D-1753-08	74303	171252449	77998172	37	112647											
ABL2	27	broad.mit.edu	37	chr1	179102283	179102283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacaaacgtgagccaccaCacccagccaggccaacttat	6	15	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179102283	A	A	179102283	1	1	121	0	1	0	0	0	0	0	0	0	93	493	17	3		3	ABL2	1	179102283	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	7849834	179102283	70148338	38	112648											
CACNA1E	777	broad.mit.edu	37	chr1	181745146	181745146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggctcgtttgctaaaaCaccctcctccatgccctgaa	6	15	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181745146	A	A	181745146	1	1	121	0	1	0	0	0	0	0	0	0	2568	493	17	3		3	CACNA1E	1	181745146	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2642863	181745146	67505475	39	112649											
RNASEL	6041	broad.mit.edu	37	chr1	182550586	182550586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttagattttggtgtttttTgtgctttcttggtttttctt	9	4	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182550586	C	C	182550586	1	2	121	0	1	0	0	0	0	0	0	0	13527	1827	63	5		5	RNASEL	1	182550586	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	805440	182550586	66700035	40	112650											
RGS8	85397	broad.mit.edu	37	chr1	182638723	182638723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggagaaaagaggaaagGgtcaggggcaagaaaacagg	18	3	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182638723	T	T	182638723	1	4	121	0	1	0	0	0	0	0	0	0	13421	1247	43	2		2	RGS8	1	182638723	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	88137	182638723	66611898	41	112651											
NMNAT2	23057	broad.mit.edu	37	chr1	183247839	183247839	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaccctcagccttcttccCctggtgaatacataactctc	5	15	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183247839	G	G	183247839	1	3	121	0	1	0	0	0	0	0	0	0	10594	638	22	4		4	NMNAT2	1	183247839	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	609116	183247839	66002782	42	112652											
PRG4	10216	broad.mit.edu	37	chr1	186276415	186276415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccaccactcccaaggagCctgcacccaccaccaccaag	5	22	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186276415	A	A	186276415	3	1	121	1	0	0	0	0	1	0	0	0	12587	739	26	3	1586	3	PRG4	1	186276415	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3028576	186276415	62974206	43	112653											
PRG4	10216	broad.mit.edu	37	chr1	186279110	186279110	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttttctggaggggaatcTgattgataagcacacctcac	10	8	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186279110	A	A	186279110	1	1	121	0	1	0	0	0	0	0	0	0	12587	1595	55	5		5	PRG4	1	186279110	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	2695	186279110	62971511	44	112654											
ASPM	259266	broad.mit.edu	37	chr1	197071597	197071597	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagagttgcggctatatgcaTcatttttaaatgtcttctag	9	6	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197071597	G	G	197071597	3	3	121	1	0	0	0	0	1	0	0	0	1060	1435	50	5	3693	5	ASPM	1	197071597	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	10792487	197071597	52179024	45	112655											
CRB1	23418	broad.mit.edu	37	chr1	197390959	197390959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcatcattaaatgtcaaGgcaggctgtgtgagaaagga	13	6	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197390959	T	T	197390959	3	4	121	1	0	0	0	0	1	0	0	0	3880	991	35	2	2023	2	CRB1	1	197390959	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	319362	197390959	51859662	46	112656											
NR5A2	2494	broad.mit.edu	37	chr1	200080540	200080540	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaggtcagaagcactcttGtgctttgaaagggagagatt	12	6	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200080540	A	A	200080540	1	1	121	0	1	0	0	0	0	0	0	0	10731	1392	48	4		4	NR5A2	1	200080540	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2689581	200080540	49170081	47	112657											
CACNA1S	779	broad.mit.edu	37	chr1	201046043	201046043	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggacacgcagagggagagCctacctggaagacgctgatg	16	9	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201046043	T	T	201046043	1	4	121	0	1	0	0	0	0	0	0	0	2573	754	26	4		4	CACNA1S	1	201046043	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	965503	201046043	48204578	48	112658											
TNNT2	7139	broad.mit.edu	37	chr1	201337405	201337405	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaggccccactcatgctaTcaggcagaacccagagcaga	10	14	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201337405	C	C	201337405	1	2	121	0	1	0	0	0	0	0	0	0	16454	1450	50	5		5	TNNT2	1	201337405	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	291362	201337405	47913216	49	112659											
IPO9	55705	broad.mit.edu	37	chr1	201839917	201839917	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagggcgggaactcggggaGaatctagaccagattcttcg	15	9	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201839917	A	A	201839917	2	1	121	1	0	0	0	0	0	0	0	1	7869	933	33	4		4	IPO9	1	201839917	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	502512	201839917	47410704	50	112660											
RCOR3	55758	broad.mit.edu	37	chr1	211487073	211487073	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaacagccaccatcacttaTtggaattcagacagattcac	5	12	4	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211487073	A	A	211487073	3	1	121	1	0	0	0	0	1	0	0	0	13292	1493	52	5	1704	5	RCOR3	1	211487073	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	9647156	211487073	37763548	51	112661											
CNIH3	149111	broad.mit.edu	37	chr1	224922425	224922425	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actggtgagtatctgcccctCctggtggttttgactcctgc	11	12	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224922425	A	A	224922425	1	1	121	0	1	0	0	0	0	0	0	0	3636	870	30	3		3	CNIH3	1	224922425	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	13435352	224922425	24328196	52	112662											
OBSCN	84033	broad.mit.edu	37	chr1	228402005	228402005	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggaagtggtggcgggGggccgcgtggccatctccgc	20	11	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228402005	T	T	228402005	2	4	121	1	0	0	0	0	0	0	0	1	10907	1219	43	2		2	OBSCN	1	228402005	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	3479580	228402005	20848616	53	112663											
OBSCN	84033	broad.mit.edu	37	chr1	228433270	228433270	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagctccagctcaaaagtacGcatggaggtcaagggctgca	13	10	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228433270	C	C	228433270	3	2	121	1	0	0	0	0	1	0	0	0	10907	1087	38	4	3680	4	OBSCN	1	228433270	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	31265	228433270	20817351	54	112664											
GALNT2	2590	broad.mit.edu	37	chr1	230385082	230385082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttccagcttctttgctGggcccgcaccgcctggagac	12	15	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230385082	T	T	230385082	1	4	121	0	1	0	0	0	0	0	0	0	6275	1363	47	2		2	GALNT2	1	230385082	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1951812	230385082	18865539	55	112665											
TTC13	79573	broad.mit.edu	37	chr1	231047118	231047118	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagggagctccttaccatttCtttgtgtactctgtacctat	7	10	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231047118	A	A	231047118	1	1	121	0	1	0	0	0	0	0	0	0	16806	928	32	3		3	TTC13	1	231047118	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	662036	231047118	18203503	56	112666											
EGLN1	54583	broad.mit.edu	37	chr1	231509813	231509813	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacatgacgtacataaccCgttccattgcccggataaca	6	13	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231509813	A	A	231509813	2	1	121	1	0	0	0	0	0	0	0	1	5008	639	23	1		1	EGLN1	1	231509813	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	462695	231509813	17740808	57	112667											
SIPA1L2	57568	broad.mit.edu	37	chr1	232650756	232650756	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccattctgcaggacagaagtGatgctttcataactggtctg	10	9	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232650756	A	A	232650756	2	1	121	1	0	0	0	0	0	0	0	1	14443	1280	45	4		4	SIPA1L2	1	232650756	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	1140943	232650756	16599865	58	112668											
RYR2	6262	broad.mit.edu	37	chr1	237777895	237777895	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctctttgtacctctcatcAagcttttctataccctgctg	4	14	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237777895	T	T	237777895	4	4	121	1	0	0	0	0	0	1	0	0	13880	131	5	5	5613	5	RYR2	1	237777895	Nonsense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	5127139	237777895	11472726	59	112669											
RYR2	6262	broad.mit.edu	37	chr1	237813144	237813144	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agattatctactgccaaacaCaaatggccttctactctctg	5	12	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237813144	G	G	237813144	1	3	121	0	1	0	0	0	0	0	0	0	13880	493	17	4		4	RYR2	1	237813144	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	35249	237813144	11437477	60	112670											
ZP4	57829	broad.mit.edu	37	chr1	238053782	238053782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaagctattagtacaggagGagacgttgcctcctggttga	12	9	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053782	T	T	238053782	3	4	121	1	0	0	0	0	1	0	0	0	18347	1174	41	3	1516	3	ZP4	1	238053782	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	240638	238053782	11196839	61	112671											
FMN2	56776	broad.mit.edu	37	chr1	240421101	240421101	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagctctcttcaaacattaAaaaaaacactgttttgaata	3	7	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240421101	G	G	240421101	1	3	121	0	1	0	0	0	0	0	0	0	6008	29	1	5		5	FMN2	1	240421101	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	2367319	240421101	8829520	62	112672											
KMO	8564	broad.mit.edu	37	chr1	241723855	241723855	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatttttacattgttatgaAtaaaattctctaccatactg	3	6	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241723855	T	T	241723855	1	4	121	0	1	0	0	0	0	0	0	0	8495	116	4	5		5	KMO	1	241723855	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	1302754	241723855	7526766	63	112673											
OR2L13	284521	broad.mit.edu	37	chr1	248263647	248263647	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccactccctttgtatttcCtctttccaagttgattccaa	3	15	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248263647	T	T	248263647	1	4	121	0	1	0	0	0	0	0	0	0	11100	696	24	4		4	OR2L13	1	248263647	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	6539792	248263647	986974	64	112674											
C2orf39	92749	broad.mit.edu	37	chr2	26677473	26677473	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcctgggggcctgggtaGtacccaatggacatgacaat	13	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26677473	A	A	26677473	1	1	121	0	1	0	0	0	0	0	0	0	2186	1044	36	4		4	C2orf39	2	26677473	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08		26677473	216521900	65	112675											
OTOF	9381	broad.mit.edu	37	chr2	26696258	26696258	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccacaggatgtcctccgcCagggcctgcactcaccactt	10	17	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26696258	T	T	26696258	1	4	121	0	1	0	0	0	0	0	0	0	11397	609	21	4		4	OTOF	2	26696258	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	18785	26696258	216503115	66	112676											
SLC5A6	8884	broad.mit.edu	37	chr2	27423286	27423286	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcacagtgaggacagaggCggggtcctgagtcaacatca	15	9	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27423286	A	A	27423286	1	1	121	0	1	0	0	0	0	0	0	0	14783	783	27	3		3	SLC5A6	2	27423286	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	727028	27423286	215776087	67	112677											
SLC30A6	55676	broad.mit.edu	37	chr2	32391102	32391102	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgaagtcgggccccttgGcaggagcggctgtctcccaa	14	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32391102	A	A	32391102	1	1	121	0	1	0	0	0	0	0	0	0	14673	1218	42	4		4	SLC30A6	2	32391102	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	4967816	32391102	210808271	68	112678											
BIRC6	57448	broad.mit.edu	37	chr2	32772983	32772983	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttatattgggccaaagggActggctttggaacaggctct	13	7	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32772983	C	C	32772983	3	2	121	1	0	0	0	0	1	0	0	0	1444	275	10	5	13131	5	BIRC6	2	32772983	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	381881	32772983	210426390	69	112679											
DHX57	90957	broad.mit.edu	37	chr2	39088997	39088997	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctgtcaagggcaaaacaTgacaaaaatgacacataaaa	6	8	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39088997	G	G	39088997	1	3	121	0	1	0	0	0	0	0	0	0	4553	1479	51	5		5	DHX57	2	39088997	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	6316014	39088997	204110376	70	112680											
CCDC88A	55704	broad.mit.edu	37	chr2	55536362	55536362	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctcttctagtttctcctTctgacgtcttaattcattta	3	10	6	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55536362	C	C	55536362	3	2	121	1	0	0	0	0	1	0	0	0	2891	1792	62	5	1543	5	CCDC88A	2	55536362	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	16447365	55536362	187663011	71	112681											
CCDC85A	114800	broad.mit.edu	37	chr2	56611409	56611409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttttttaaggttgtgtgGaggaaacttggagatgctgc	13	3	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56611409	T	T	56611409	3	4	121	1	0	0	0	0	1	0	0	0	2887	1183	41	3	1603	3	CCDC85A	2	56611409	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	1075047	56611409	186587964	72	112682											
ASPRV1	151516	broad.mit.edu	37	chr2	70188691	70188691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtggggatgacttgccCggccttgggcaagcaggagg	18	9	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70188691	A	A	70188691	3	1	121	1	0	0	0	0	1	0	0	0	1062	652	23	1	905	1	ASPRV1	2	70188691	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	13577282	70188691	173010682	73	112683											
DYSF	8291	broad.mit.edu	37	chr2	71839992	71839992	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggggagcctcagggccaagCtacccttcctagttgagatg	14	11	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71839992	G	G	71839992	1	3	121	0	1	0	0	0	0	0	0	0	4899	812	28	4		4	DYSF	2	71839992	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1651301	71839992	171359381	74	112684											
HK2	3099	broad.mit.edu	37	chr2	75099464	75099464	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaatgcctggctaacttcaTggataagctacaaatcaaag	8	9	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75099464	C	C	75099464	3	2	121	1	0	0	0	0	1	0	0	0	7258	1464	51	5	427	5	HK2	2	75099464	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	3259472	75099464	168099909	75	112685											
LRRTM4	80059	broad.mit.edu	37	chr2	77745899	77745899	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgatctttctgtgttgaCcacctggacttcagaacaga	10	9	3	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77745899	G	G	77745899	3	3	121	1	0	0	0	0	1	0	0	0	9129	507	18	4	690	4	LRRTM4	2	77745899	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	2646435	77745899	165453474	76	112686											
RPIA	22934	broad.mit.edu	37	chr2	88991073	88991073	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtagtccagactgaggcGcagataggggttcctcgaag	15	8	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88991073	A	A	88991073	1	1	121	0	1	0	0	0	0	0	0	0	13664	1102	38	4		4	RPIA	2	88991073	5'Flank	SNP	G	TCGA-44-6144-01A-11D-1753-08	11245174	88991073	154208300	77	112687											
TEKT4	150483	broad.mit.edu	37	chr2	95541448	95541448	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtacctgcgctcgcaccGgcccaacatggagctgtgcc	12	16	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95541448	C	C	95541448	3	2	121	1	0	0	0	0	1	0	0	0	15877	1116	39	4	1070	4	TEKT4	2	95541448	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	6550375	95541448	147657925	78	112688											
KCNIP3	30818	broad.mit.edu	37	chr2	96047273	96047273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgaatttcagtggaagCcacacagcaactggaactag	12	9	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96047273	A	A	96047273	1	1	121	0	1	0	0	0	0	0	0	0	8111	754	26	3		3	KCNIP3	2	96047273	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	505825	96047273	147152100	79	112689											
SNRNP200	23020	broad.mit.edu	37	chr2	96953509	96953509	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacttccgatgtcaggtctgGagatcagatgcaccctgagg	12	10	3	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96953509	C	C	96953509	1	2	121	0	1	0	0	0	0	0	0	0	14966	1189	41	4		4	SNRNP200	2	96953509	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	906236	96953509	146245864	80	112690											
SNRNP200	23020	broad.mit.edu	37	chr2	96969089	96969089	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatggacatgcaatgtgaTattgaatggcagaacctttc	9	7	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96969089	C	C	96969089	1	2	121	0	1	0	0	0	0	0	0	0	14966	1421	49	5		5	SNRNP200	2	96969089	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	15580	96969089	146230284	81	112691											
NCAPH	23397	broad.mit.edu	37	chr2	97009753	97009753	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggcctcacatgtttaaaTtacgacaggttttgaagaac	8	9	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97009753	G	G	97009753	1	3	121	0	1	0	0	0	0	0	0	0	10304	1508	52	5		5	NCAPH	2	97009753	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	40664	97009753	146189620	82	112692											
ANKRD23	200539	broad.mit.edu	37	chr2	97506536	97506536	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctaccttgtcatgggcAttggggtcccctccgtctgt	12	12	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97506536	G	G	97506536	2	3	121	1	0	0	0	0	0	0	0	1	652	214	8	5		5	ANKRD23	2	97506536	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	496783	97506536	145692837	83	112693											
FAHD2B	151313	broad.mit.edu	37	chr2	97750067	97750067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttccccctcaaaccccCcagtgttttacaaacacaac	2	18	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97750067	A	A	97750067	1	1	121	0	1	0	0	0	0	0	0	0	5420	638	22	2		2	FAHD2B	2	97750067	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	243531	97750067	145449306	84	112694											
RGPD4	285190	broad.mit.edu	37	chr2	108475847	108475847	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaacaggtatttctccttGgagtagtatataccagccac	7	9	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108475847	T	T	108475847	4	4	121	1	0	0	0	0	0	1	0	0	13396	1349	47	2	1513	2	RGPD4	2	108475847	Nonsense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	10725780	108475847	134723526	85	112695											
MERTK	10461	broad.mit.edu	37	chr2	112786012	112786012	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggctgcagctagaaaaactCttagaaagtttgcctgacgt	10	8	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112786012	G	G	112786012	2	3	121	1	0	0	0	0	0	0	0	1	9572	900	32	4		4	MERTK	2	112786012	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	4310165	112786012	130413361	86	112696											
MGAT5	4249	broad.mit.edu	37	chr2	135076256	135076256	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgttcagatccctgctaCgcagactatggagtggatgg	14	9	1	2	rs149877815		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135076256	T	T	135076256	2	4	121	1	0	0	0	0	0	0	0	1	9641	547	19	4		4	MGAT5	2	135076256	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	22290244	135076256	108123117	87	112697											
LRP1B	53353	broad.mit.edu	37	chr2	141747245	141747245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgggagggagggggaagCaagattaattatttaaaatt	14	2	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141747245	A	A	141747245	1	1	121	0	1	0	0	0	0	0	0	0	9042	725	25	3		3	LRP1B	2	141747245	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	6670989	141747245	101452128	88	112698											
ARHGAP15	55843	broad.mit.edu	37	chr2	143973859	143973859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctatgactgaaaacttcCgtcactgcaatgactcttga	7	10	3	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143973859	A	A	143973859	1	1	121	0	1	0	0	0	0	0	0	0	868	667	23	1		1	ARHGAP15	2	143973859	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2226614	143973859	99225514	89	112699											
STAM2	10254	broad.mit.edu	37	chr2	153004817	153004817	+	Intron	DEL	A	-	-													tttaggcaatctttcgctctAaaaaaaaaaagagagagaga							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153004817	-	-	153004817	6	5	121	0	1	1	0	1	0	0	0	0	15367	377	13	0		0	STAM2	2	153004817	Intron	DEL	A	TCGA-44-6144-01A-11D-1753-08	9030958	153004817	90194556	90	112700											
UPP2	151531	broad.mit.edu	37	chr2	158971741	158971741	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacagacagatactgtatGtacaaaaccgggcctgtgct	12	9	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158971741	A	A	158971741	3	1	121	1	0	0	0	0	1	0	0	0	17139	1377	48	4	498	4	UPP2	2	158971741	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	5966924	158971741	84227632	91	112701											
COBLL1	22837	broad.mit.edu	37	chr2	165548648	165548648	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaccctatttagatttacaTgctagaaaaatttttcccta	4	8	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165548648	G	G	165548648	1	3	121	0	1	0	0	0	0	0	0	0	3686	1479	51	5		5	COBLL1	2	165548648	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	6576907	165548648	77650725	92	112702											
SCN3A	6328	broad.mit.edu	37	chr2	165953852	165953852	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgccaagagcctgacaGtcactcaaattgttaacatc	7	11	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165953852	C	C	165953852	3	2	121	1	0	0	0	0	1	0	0	0	14031	1020	36	4	1877	4	SCN3A	2	165953852	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	405204	165953852	77245521	93	112703											
SCN1A	6323	broad.mit.edu	37	chr2	166897828	166897828	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagtatttaagacaatacaGatggtgatggccaggtcaac	11	6	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166897828	T	T	166897828	2	4	121	1	0	0	0	0	0	0	0	1	14027	932	33	3		3	SCN1A	2	166897828	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	943976	166897828	76301545	94	112704											
SCN7A	6332	broad.mit.edu	37	chr2	167289284	167289284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaataaggaagtaaaatgaGgctaaatgtatctcattttg	8	3	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167289284	T	T	167289284	1	4	121	0	1	0	0	0	0	0	0	0	14036	1015	35	2		2	SCN7A	2	167289284	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	391456	167289284	75910089	95	112705											
MYO3B	140469	broad.mit.edu	37	chr2	171358188	171358188	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcagtgagaaagcaggAgggaggatgagacgggcaat	17	4	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171358188	G	G	171358188	1	3	121	0	1	0	0	0	0	0	0	0	10171	319	11	5		5	MYO3B	2	171358188	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	4068904	171358188	71841185	96	112706											
TTN	7273	broad.mit.edu	37	chr2	179395870	179395870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcagccaggtcacagttgGtaccggctcaccatcggtgt	12	13	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179395870	T	T	179395870	3	4	121	1	0	0	0	0	1	0	0	0	16861	1261	44	3	2527	3	TTN	2	179395870	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	8037682	179395870	63803503	97	112707											
COL5A2	1290	broad.mit.edu	37	chr2	189931039	189931039	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catttctcttaactgttctaGttttccttactgttctcaga	4	10	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189931039	C	C	189931039	1	2	121	0	1	0	0	0	0	0	0	0	3729	1044	36	4		4	COL5A2	2	189931039	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	10535169	189931039	53268334	98	112708											
STAT1	6772	broad.mit.edu	37	chr2	191865802	191865802	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttactcaatactcaccaTaaccttgtccttcacatttc	2	13	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191865802	A	A	191865802	3	1	121	1	0	0	0	0	1	0	0	0	15382	1406	49	5	1876	5	STAT1	2	191865802	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	1934763	191865802	51333571	99	112709											
DNAH7	56171	broad.mit.edu	37	chr2	196786793	196786793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttatttccaatagatcCttaaattaaagggtttacct	5	6	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196786793	A	A	196786793	1	1	121	0	1	0	0	0	0	0	0	0	4646	696	24	2		2	DNAH7	2	196786793	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	4920991	196786793	46412580	100	112710											
ANKRD44	91526	broad.mit.edu	37	chr2	197954713	197954713	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagtcagagtgagcatTtagggcagctaaatgtaaag	13	6	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197954713	G	G	197954713	3	3	121	1	0	0	0	0	1	0	0	0	672	1841	64	5	1754	5	ANKRD44	2	197954713	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	1167920	197954713	45244660	101	112711											
MAP2	4133	broad.mit.edu	37	chr2	210518007	210518007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggatcaaggcggagcagGggaaggacttgtccgaagcg	17	7	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210518007	T	T	210518007	3	4	121	1	0	0	0	0	1	0	0	0	9327	1232	43	2	115	2	MAP2	2	210518007	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	12563294	210518007	32681366	102	112712											
CPS1	1373	broad.mit.edu	37	chr2	211454912	211454912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattttgatcgcgggaggacCggggaacccagctcttgcag	15	10	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211454912	A	A	211454912	3	1	121	1	0	0	0	0	1	0	0	0	3855	652	23	1	846	1	CPS1	2	211454912	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	936905	211454912	31744461	103	112713											
CPS1	1373	broad.mit.edu	37	chr2	211507348	211507348	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgacaaactgtactttgaaGagttgtccttggagagaatc	11	6	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211507348	T	T	211507348	4	4	121	1	0	0	0	0	0	1	0	0	3855	943	33	3	3220	3	CPS1	2	211507348	Nonsense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	52436	211507348	31692025	104	112714											
ERBB4	2066	broad.mit.edu	37	chr2	212252601	212252601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggaaattatgcagagaCgagagaggaaacatggtaag	14	3	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212252601	A	A	212252601	1	1	121	0	1	0	0	0	0	0	0	0	5251	551	19	3		3	ERBB4	2	212252601	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	745253	212252601	30946772	105	112715											
TNS1	7145	broad.mit.edu	37	chr2	218669163	218669163	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttccccatggcactggcCctgggcaaggggcagggttc	14	15	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218669163	A	A	218669163	1	1	121	0	1	0	0	0	0	0	0	0	16466	638	22	2		2	TNS1	2	218669163	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	6416562	218669163	24530210	106	112716											
DOCK10	55619	broad.mit.edu	37	chr2	225750605	225750605	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagaattattctaattccttCaggagtgctatatttctagg	7	6	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225750605	A	A	225750605	1	1	121	0	1	0	0	0	0	0	0	0	4725	841	29	3		3	DOCK10	2	225750605	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	7081442	225750605	17448768	107	112717											
TRIP12	9320	broad.mit.edu	37	chr2	230787157	230787157	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggttcaatttaaactagGgttttggccccttgacccca	9	11	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230787157	A	A	230787157	1	1	121	0	1	0	0	0	0	0	0	0	16681	1247	43	4		4	TRIP12	2	230787157	5'Flank	SNP	G	TCGA-44-6144-01A-11D-1753-08	5036552	230787157	12412216	108	112718											
ALPP	250	broad.mit.edu	37	chr2	233244189	233244189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgggtctccgtgtctgcCccagagaagagctcagagtg	14	11	4	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233244189	A	A	233244189	1	1	121	0	1	0	0	0	0	0	0	0	548	638	22	2		2	ALPP	2	233244189	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2457032	233244189	9955184	109	112719											
NGEF	25791	broad.mit.edu	37	chr2	233745922	233745922	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtcagctcgtctggctgctGagccacgtatgggtgcacgc	14	13	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233745922	C	C	233745922	3	2	121	1	0	0	0	0	1	0	0	0	10489	1299	45	4	264	4	NGEF	2	233745922	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	501733	233745922	9453451	110	112720											
TRPM8	79054	broad.mit.edu	37	chr2	234878403	234878403	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaactggaagattatccTgtgtctgtttattataccct	7	8	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234878403	A	A	234878403	3	1	121	1	0	0	0	0	1	0	0	0	16717	1580	55	5	2148	5	TRPM8	2	234878403	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	1132481	234878403	8320970	111	112721											
MTERFD2	130916	broad.mit.edu	37	chr2	242039105	242039105	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctgcttctcaaggaggcActgaacaagattcctcctgc	8	15	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242039105	C	C	242039105	3	2	121	1	0	0	0	0	1	0	0	0	10014	159	6	5	931	5	MTERFD2	2	242039105	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	7160702	242039105	1160268	112	112722											
SLC6A11	6538	broad.mit.edu	37	chr3	10976920	10976920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggctggtgcgtttgggCagggttcgcgccttgggtcc	20	9	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10976920	A	A	10976920	1	1	121	0	1	0	0	0	0	0	0	0	14788	725	25	3		3	SLC6A11	3	10976920	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08		10976920	187045510	113	112723											
C3orf20	84077	broad.mit.edu	37	chr3	14744780	14744780	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcgccacatgtgagcacctCagtgcttgggtcgggggagt	16	10	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14744780	T	T	14744780	1	4	121	0	1	0	0	0	0	0	0	0	2235	841	29	4		4	C3orf20	3	14744780	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	3767860	14744780	183277650	114	112724											
XIRP1	165904	broad.mit.edu	37	chr3	39229101	39229101	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgggatctgtgacctcTgacccctgcttttcggccaa	11	13	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39229101	A	A	39229101	2	1	121	1	0	0	0	0	0	0	0	1	17556	1567	55	5		5	XIRP1	3	39229101	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	24484321	39229101	158793329	115	112725											
PLXNB1	5364	broad.mit.edu	37	chr3	48462684	48462684	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactagggtctggggaggggCacatcacaccagaaccagtc	13	12	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48462684	G	G	48462684	3	3	121	1	0	0	0	0	1	0	0	0	12218	710	25	4	4768	4	PLXNB1	3	48462684	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	9233583	48462684	149559746	116	112726											
BSN	8927	broad.mit.edu	37	chr3	49701679	49701679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacctccttttttctgcCttctcccaccccttgtcttc	2	19	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49701679	A	A	49701679	1	1	121	0	1	0	0	0	0	0	0	0	1539	696	24	2		2	BSN	3	49701679	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1238995	49701679	148320751	117	112727											
ATXN7	6314	broad.mit.edu	37	chr3	63973678	63973678	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggtgttttgggatataaGgcagaccaaaaattattaat	10	3	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63973678	A	A	63973678	1	1	121	0	1	0	0	0	0	0	0	0	1219	1015	35	4		4	ATXN7	3	63973678	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	14271999	63973678	134048752	118	112728											
ROBO2	6092	broad.mit.edu	37	chr3	77651490	77651490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccaaataacacaggctaCcccatatgccacgacacaga	6	15	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77651490	A	A	77651490	3	1	121	1	0	0	0	0	1	0	0	0	13625	507	18	3	3064	3	ROBO2	3	77651490	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	13677812	77651490	120370940	119	112729											
EPHA3	2042	broad.mit.edu	37	chr3	89462267	89462267	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaaatctagctacaattgcGcctttctttctttcctcaaa	3	12	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89462267	C	C	89462267	1	2	121	0	1	0	0	0	0	0	0	0	5210	1102	38	4		4	EPHA3	3	89462267	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	11810777	89462267	108560163	120	112730											
DPPA4	55211	broad.mit.edu	37	chr3	109050950	109050950	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatttcaaaagtaaaatcActttttttttcttttttgag	4	4	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109050950	G	G	109050950	1	3	121	0	1	0	0	0	0	0	0	0	4776	174	6	5		5	DPPA4	3	109050950	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	19588683	109050950	88971480	121	112731											
ATP6V1A	523	broad.mit.edu	37	chr3	113503392	113503392	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataaaaatagactacagaagGatagtttaaagtttttctta	6	3	1	2	rs150142182	by1000genomes	TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113503392	T	T	113503392	1	4	121	0	1	0	0	0	0	0	0	0	1181	1189	41	3		3	ATP6V1A	3	113503392	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	4452442	113503392	84519038	122	112732											
KIAA1407	57577	broad.mit.edu	37	chr3	113761558	113761558	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagttcttaccatcaaacTtgtcatatttcaaatggcca	5	9	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113761558	C	C	113761558	3	2	121	1	0	0	0	0	1	0	0	0	8299	1609	56	5	2459	5	KIAA1407	3	113761558	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	258166	113761558	84260872	123	112733											
B4GALT4	8702	broad.mit.edu	37	chr3	118948626	118948626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagatgttttgatacaggCaagtacatattatacttaaa	7	4	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118948626	A	A	118948626	1	1	121	0	1	0	0	0	0	0	0	0	1278	725	25	3		3	B4GALT4	3	118948626	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	5187068	118948626	79073804	124	112734											
PLA1A	51365	broad.mit.edu	37	chr3	119347542	119347542	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttccctttacccttttcTtgcagacctaagcagcaacg	5	14	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119347542	C	C	119347542	1	2	121	0	1	0	0	0	0	0	0	0	12083	1624	56	5		5	PLA1A	3	119347542	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	398916	119347542	78674888	125	112735											
CLSTN2	64084	broad.mit.edu	37	chr3	140178315	140178315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagcagaaaacagatgaGgacaccgcatcatgacctgt	11	10	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140178315	T	T	140178315	1	4	121	0	1	0	0	0	0	0	0	0	3594	1015	35	2		2	CLSTN2	3	140178315	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	20830773	140178315	57844115	126	112736											
IFT80	57560	broad.mit.edu	37	chr3	159976499	159976499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactccaaagtaactaagaGtaaacagatagactgtgtga	8	6	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159976499	T	T	159976499	1	4	121	0	1	0	0	0	0	0	0	0	7634	1044	36	3		3	IFT80	3	159976499	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	19798184	159976499	38045931	127	112737											
SI	6476	broad.mit.edu	37	chr3	164757634	164757634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggtcgatttagttataCaaagttcaaacaataaggtt	9	4	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164757634	A	A	164757634	1	1	121	0	1	0	0	0	0	0	0	0	14410	493	17	3		3	SI	3	164757634	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	4781135	164757634	33264796	128	112738											
ZNF721	170960	broad.mit.edu	37	chr4	461512	461512	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgaccctggaggcaggccTgcagatcctggcctcagttg	13	13	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	461512	A	A	461512	1	1	121	0	1	0	0	0	0	0	0	0	18250	1595	55	5		5	ZNF721	4	461512	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08		461512	190692764	129	112739											
CPLX1	10815	broad.mit.edu	37	chr4	818275	818275	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccaccccacctcccgcttCctacctcctagagcctgctt	4	23	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	818275	T	T	818275	1	4	121	0	1	0	0	0	0	0	0	0	3836	870	30	4		4	CPLX1	4	818275	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	356763	818275	190336001	130	112740											
OCIAD2	132299	broad.mit.edu	37	chr4	48887594	48887594	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagtgcctagaagagaaGcaaaaatagacagcggtttg	13	6	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48887594	A	A	48887594	1	1	121	0	1	0	0	0	0	0	0	0	10913	986	34	4		4	OCIAD2	4	48887594	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	48069319	48887594	142266682	131	112741											
CWH43	80157	broad.mit.edu	37	chr4	49030646	49030646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattaaaacaattcctcagGcaccaaccaaagaggtctct	5	13	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49030646	T	T	49030646	3	4	121	1	0	0	0	0	1	0	0	0	4106	1217	42	3	1305	3	CWH43	4	49030646	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	143052	49030646	142123630	132	112742											
KIAA1211	57482	broad.mit.edu	37	chr4	57189425	57189425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaggttgtgctaggaaGgggccagctgaatatgccat	14	8	0	2	rs148570607	by1000genomes	TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57189425	T	T	57189425	1	4	121	0	1	0	0	0	0	0	0	0	8285	1015	35	2		2	KIAA1211	4	57189425	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	8158779	57189425	133964851	133	112743											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69095267	69095267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaattagaatacactcaGttgctgggtcacaacactgt	8	8	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69095267	T	T	69095267	1	4	121	0	1	0	0	0	0	0	0	0	16363	1044	36	3		3	TMPRSS11B	4	69095267	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	11905842	69095267	122059009	134	112744											
ADAMTS3	9508	broad.mit.edu	37	chr4	73149331	73149331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcttgctgcaggactcaCaacataacttgttataacct	7	11	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73149331	A	A	73149331	3	1	121	1	0	0	0	0	1	0	0	0	267	478	17	3	481	3	ADAMTS3	4	73149331	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	4054064	73149331	118004945	135	112745											
RG9MTD2	93587	broad.mit.edu	37	chr4	100478502	100478502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaatctttacacatacCtgcacaggatgcagtgcccg	7	11	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100478502	A	A	100478502	3	1	121	1	0	0	0	0	1	0	0	0	13380	695	24	2	619	2	RG9MTD2	4	100478502	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	27329171	100478502	90675774	136	112746											
DAPP1	27071	broad.mit.edu	37	chr4	100756761	100756761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttggcctgagtgaaagcGctgttccctcctttctaggt	12	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100756761	T	T	100756761	1	4	121	0	1	0	0	0	0	0	0	0	4272	1102	38	3		3	DAPP1	4	100756761	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	278259	100756761	90397515	137	112747											
CFI	3426	broad.mit.edu	37	chr4	110673626	110673626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtataacgttagcttacctGcatccatgtcagcagtcaaa	7	10	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110673626	A	A	110673626	3	1	121	1	0	0	0	0	1	0	0	0	3319	1319	46	4	837	4	CFI	4	110673626	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	9916865	110673626	80480650	138	112748											
NDST3	9348	broad.mit.edu	37	chr4	119176668	119176668	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagatctggtatacttggTacttatttcaacgtagtcaa	7	8	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119176668	A	A	119176668	1	1	121	0	1	0	0	0	0	0	0	0	10352	1653	57	5		5	NDST3	4	119176668	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	8503042	119176668	71977608	139	112749											
FAT4	79633	broad.mit.edu	37	chr4	126372825	126372825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttattacttgctgagcacaGgtcctgccaccagttatttc	7	12	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126372825	T	T	126372825	3	4	121	1	0	0	0	0	1	0	0	0	5749	1000	35	2	10688	2	FAT4	4	126372825	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	7196157	126372825	64781451	140	112750											
NDUFC1	4717	broad.mit.edu	37	chr4	140213785	140213785	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaagagttaaacagttaAaattagaaatgtaatcttcc	5	5	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140213785	C	C	140213785	1	2	121	0	1	0	0	0	0	0	0	0	10384	29	1	5		5	NDUFC1	4	140213785	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	13840960	140213785	50940491	141	112751											
FHDC1	85462	broad.mit.edu	37	chr4	153885950	153885950	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatgctttgaatgtgtcAagtttaaaaacaggagcagt	10	4	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153885950	T	T	153885950	1	4	121	0	1	0	0	0	0	0	0	0	5933	145	5	5		5	FHDC1	4	153885950	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	13672165	153885950	37268326	142	112752											
TLR2	7097	broad.mit.edu	37	chr4	154626374	154626374	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catggacgaggctcagcgggAaggattttgggtaaatctga	15	6	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154626374	T	T	154626374	3	4	121	1	0	0	0	0	1	0	0	0	16074	246	9	5	2317	5	TLR2	4	154626374	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	740424	154626374	36527902	143	112753											
NAF1	92345	broad.mit.edu	37	chr4	164087832	164087832	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actccaaagtcggtgccattGaatttcagagtttccagctg	9	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164087832	A	A	164087832	2	1	121	1	0	0	0	0	0	0	0	1	10234	1281	45	4		4	NAF1	4	164087832	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	9461458	164087832	27066444	144	112754											
C4orf43	55319	broad.mit.edu	37	chr4	164435361	164435361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaaagggaattgtccaGcctggttctttaagacacag	10	8	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164435361	T	T	164435361	1	4	121	0	1	0	0	0	0	0	0	0	2294	986	34	3		3	C4orf43	4	164435361	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	347529	164435361	26718915	145	112755											
KLHL2	11275	broad.mit.edu	37	chr4	166160191	166160191	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttctaaaaaatatttggaAtgattacacctttttagtaa	4	4	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166160191	G	G	166160191	1	3	121	0	1	0	0	0	0	0	0	0	8445	116	4	5		5	KLHL2	4	166160191	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	1724830	166160191	24994085	146	112756											
ZNF622	90441	broad.mit.edu	37	chr5	16451832	16451832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcattcctgtcttcagCatccattttgatttcatcct	3	12	5	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16451832	A	A	16451832	3	1	121	1	0	0	0	0	1	0	0	0	18173	710	25	3	69	3	ZNF622	5	16451832	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08		16451832	164463428	147	112757											
IL7R	3575	broad.mit.edu	37	chr5	35875776	35875776	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggacaaggaacagttgaacCtcaccttttggtatttgatt	9	7	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35875776	G	G	35875776	1	3	121	0	1	0	0	0	0	0	0	0	7775	696	24	4		4	IL7R	5	35875776	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	19423944	35875776	145039484	148	112758											
C7	730	broad.mit.edu	37	chr5	40947905	40947905	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcgttaggaggagaatacAgagttctattttatgtggac	13	4	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40947905	G	G	40947905	3	3	121	1	0	0	0	0	1	0	0	0	2400	180	7	5	970	5	C7	5	40947905	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	5072129	40947905	139967355	149	112759											
PDE8B	8622	broad.mit.edu	37	chr5	76715644	76715644	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgacatggttttggcaacaGagatgacaaaacactttgaa	9	6	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76715644	C	C	76715644	3	2	121	1	0	0	0	0	1	0	0	0	11748	943	33	4	2256	4	PDE8B	5	76715644	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	35767739	76715644	104199616	150	112760											
ZFYVE16	9765	broad.mit.edu	37	chr5	79751468	79751468	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaattcaataatttggggTtttttttgttgatagtaacc	7	3	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79751468	G	G	79751468	1	3	121	0	1	0	0	0	0	0	0	0	17790	1740	60	5		5	ZFYVE16	5	79751468	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	3035824	79751468	101163792	151	112761											
PPIP5K2	23262	broad.mit.edu	37	chr5	102494993	102494993	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggcttcatgaaatactTcagaaagacagagattttac	8	7	2	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102494993	A	A	102494993	2	1	121	1	0	0	0	0	0	0	0	1	12434	1770	62	5		5	PPIP5K2	5	102494993	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	22743525	102494993	78420267	152	112762											
KCNN2	3781	broad.mit.edu	37	chr5	113740630	113740630	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaaaaaattttagacTtgagacgtgtagtgtctcac	8	5	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113740630	A	A	113740630	1	1	121	0	1	0	0	0	0	0	0	0	8149	1624	56	5		5	KCNN2	5	113740630	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	11245637	113740630	67174630	153	112763											
RAPGEF6	51735	broad.mit.edu	37	chr5	130799844	130799844	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacagagagaatatgtgtcGgatgcaccggtcaaaccaaa	10	9	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130799844	A	A	130799844	2	1	121	1	0	0	0	0	0	0	0	1	13156	1103	39	4		4	RAPGEF6	5	130799844	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	17059214	130799844	50115416	154	112764											
KDM3B	51780	broad.mit.edu	37	chr5	137759901	137759901	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggaagtgaaggagatggtGatggggttaaatgtgctaga	17	1	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137759901	T	T	137759901	2	4	121	1	0	0	0	0	0	0	0	1	8197	1277	45	3		3	KDM3B	5	137759901	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	6960057	137759901	43155359	155	112765											
SIL1	64374	broad.mit.edu	37	chr5	138463544	138463544	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagccatagtcagggaccTgcaggtgcaagcatagacaa	14	9	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138463544	A	A	138463544	1	1	121	0	1	0	0	0	0	0	0	0	14434	1594	55	5		5	SIL1	5	138463544	5'UTR	SNP	T	TCGA-44-6144-01A-11D-1753-08	703643	138463544	42451716	156	112766											
LARS	51520	broad.mit.edu	37	chr5	145493569	145493569	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggttagaaatgaaatcaatCtatttaggtccagcctaagg	9	6	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145493569	A	A	145493569	1	1	121	0	1	0	0	0	0	0	0	0	8706	928	32	3		3	LARS	5	145493569	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	7030025	145493569	35421691	157	112767											
SPINK14	408187	broad.mit.edu	37	chr5	147549350	147549350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttatcttgatacatttgGtgttatcttctggtgagtaa	8	6	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147549350	T	T	147549350	3	4	121	1	0	0	0	0	1	0	0	0	15177	1261	44	3	57	3	SPINK14	5	147549350	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2055781	147549350	33365910	158	112768											
HTR4	3360	broad.mit.edu	37	chr5	147900613	147900613	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcttgagggtcctgttgctCttaatctctcctctccactc	7	14	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147900613	A	A	147900613	1	1	121	0	1	0	0	0	0	0	0	0	7519	928	32	3		3	HTR4	5	147900613	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	351263	147900613	33014647	159	112769											
FAM71B	153745	broad.mit.edu	37	chr5	156590418	156590418	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgcaggactcattgctgcCcctgctattgccacatctgt	9	13	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156590418	T	T	156590418	2	4	121	1	0	0	0	0	0	0	0	1	5659	610	22	4		4	FAM71B	5	156590418	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	8689805	156590418	24324842	160	112770											
ADAM19	8728	broad.mit.edu	37	chr5	156991375	156991375	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagacaaaggaggagtccActtactcattcttctccagg	8	10	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156991375	G	G	156991375	1	3	121	0	1	0	0	0	0	0	0	0	240	174	6	5		5	ADAM19	5	156991375	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	400957	156991375	23923885	161	112771											
HK3	3101	broad.mit.edu	37	chr5	176314670	176314670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccactccccggccaccaCcatccacagaggggattaag	9	17	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176314670	A	A	176314670	3	1	121	1	0	0	0	0	1	0	0	0	7259	507	18	3	1425	3	HK3	5	176314670	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	19323295	176314670	4600590	162	112772											
COL23A1	91522	broad.mit.edu	37	chr5	177669302	177669302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcccacctgcctccttccCcctctcctcctgccccagct	3	25	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177669302	A	A	177669302	1	1	121	0	1	0	0	0	0	0	0	0	3714	638	22	2		2	COL23A1	5	177669302	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1354632	177669302	3245958	163	112773											
GRM6	2916	broad.mit.edu	37	chr5	178413537	178413537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcgcaccacaggtgtgGggcggcagcccgtgtggttg	18	11	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178413537	T	T	178413537	3	4	121	1	0	0	0	0	1	0	0	0	6867	1232	43	2	927	2	GRM6	5	178413537	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	744235	178413537	2501723	164	112774											
SQSTM1	8878	broad.mit.edu	37	chr5	179247951	179247951	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgctatggcgtcgctcacCgtgaaggcctaccttctggg	12	14	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179247951	A	A	179247951	2	1	121	1	0	0	0	0	0	0	0	1	15248	639	23	1		1	SQSTM1	5	179247951	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	834414	179247951	1667309	165	112775											
GMDS	2762	broad.mit.edu	37	chr6	1961104	1961104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggcttggtagaacttcaCagagttgataaggccacaag	12	7	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1961104	A	A	1961104	3	1	121	1	0	0	0	0	1	0	0	0	6550	478	17	3	704	3	GMDS	6	1961104	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08		1961104	169153963	166	112776											
HFE	3077	broad.mit.edu	37	chr6	26087558	26087558	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaggaagttttactgggcAtctcctgagcctaggcaata	10	10	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26087558	G	G	26087558	1	3	121	0	1	0	0	0	0	0	0	0	7148	232	8	5		5	HFE	6	26087558	5'UTR	SNP	A	TCGA-44-6144-01A-11D-1753-08	24126454	26087558	145027509	167	112777											
HIST1H4K	8362	broad.mit.edu	37	chr6	27799270	27799270	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgcttagcgccgcctttGccaagacccttcccgccttt	9	17	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27799270	T	T	27799270	2	4	121	1	0	0	0	0	0	0	0	1	7242	1306	46	3		3	HIST1H4K	6	27799270	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	1711712	27799270	143315797	168	112778											
MAS1L	116511	broad.mit.edu	37	chr6	29457359	29457359	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggatctcctcacacacacTtgtttgtgtggaagtcattg	11	9	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29457359	C	C	29457359	1	2	121	0	1	0	0	0	0	0	0	0	9413	1624	56	5		5	MAS1L	6	29457359	5'Flank	SNP	T	TCGA-44-6144-01A-11D-1753-08	1658089	29457359	141657708	169	112779											
TRIM26	7726	broad.mit.edu	37	chr6	30153924	30153924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctggccgcagggagaggtctCccttcctcttcacagagtct	11	14	4	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30153924	G	G	30153924	3	3	121	1	0	0	0	0	1	0	0	0	16624	855	30	4	274	4	TRIM26	6	30153924	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	696565	30153924	140961143	170	112780											
AGPAT1	10554	broad.mit.edu	37	chr6	32138470	32138470	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcatcaccctctggtaggGactggaggtgaaggaggaga	16	8	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32138470	T	T	32138470	1	4	121	0	1	0	0	0	0	0	0	0	386	1189	41	3		3	AGPAT1	6	32138470	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1984546	32138470	138976597	171	112781											
PNPLA1	285848	broad.mit.edu	37	chr6	36269736	36269736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaatgagtgccctgaaCgcagtcaaccaagccttcga	10	12	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36269736	A	A	36269736	3	1	121	1	0	0	0	0	1	0	0	0	12259	536	19	3	923	3	PNPLA1	6	36269736	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	4131266	36269736	134845331	172	112782											
UBR2	23304	broad.mit.edu	37	chr6	42612262	42612262	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatgctatacctcattAtaatgcttgttggtaagttt	7	5	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42612262	G	G	42612262	3	3	121	1	0	0	0	0	1	0	0	0	17028	449	16	5	2496	5	UBR2	6	42612262	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	6342526	42612262	128502805	173	112783											
CRISP1	167	broad.mit.edu	37	chr6	49806162	49806162	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacttactgcaaagtttgtCttcacagttacttgggcagg	9	8	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49806162	T	T	49806162	3	4	121	1	0	0	0	0	1	0	0	0	3911	913	32	4	147	4	CRISP1	6	49806162	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	7193900	49806162	121308905	174	112784											
TFAP2B	7021	broad.mit.edu	37	chr6	50786534	50786534	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggatttggtgtgtatccccCatttccaattatagatggat	9	8	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50786534	T	T	50786534	1	4	121	0	1	0	0	0	0	0	0	0	15911	609	21	4		4	TFAP2B	6	50786534	5'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	980372	50786534	120328533	175	112785											
PKHD1	5314	broad.mit.edu	37	chr6	51882471	51882471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaaccacagagagaacCtaaggcctctagtcggtttc	10	10	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51882471	A	A	51882471	1	1	121	0	1	0	0	0	0	0	0	0	12066	696	24	2		2	PKHD1	6	51882471	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1095937	51882471	119232596	176	112786											
HCRTR2	3062	broad.mit.edu	37	chr6	55142300	55142300	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggcggctgaaataaagcaGatccgagccagaaggaaaac	13	8	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55142300	C	C	55142300	3	2	121	1	0	0	0	0	1	0	0	0	7069	933	33	4	903	4	HCRTR2	6	55142300	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	3259829	55142300	115972767	177	112787											
PRIM2	5558	broad.mit.edu	37	chr6	57512615	57512615	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtgtccagaaaaccaaGgatgcatcatctgctctggc	9	12	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57512615	C	C	57512615	3	2	121	1	0	0	0	0	1	0	0	0	12597	991	35	4	1493	4	PRIM2	6	57512615	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2370315	57512615	113602452	178	112788											
COL9A1	1297	broad.mit.edu	37	chr6	70963245	70963245	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcatgataacctcaaagcTttaatgtaaggaagatgctt	7	6	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70963245	C	C	70963245	1	2	121	0	1	0	0	0	0	0	0	0	3739	1624	56	5		5	COL9A1	6	70963245	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	13450630	70963245	100151822	179	112789											
COL9A1	1297	broad.mit.edu	37	chr6	70965022	70965022	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaagcaggaggcttggagtGactgaatttaaactcactct	10	7	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70965022	C	C	70965022	1	2	121	0	1	0	0	0	0	0	0	0	3739	1305	45	4		4	COL9A1	6	70965022	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1777	70965022	100150045	180	112790											
DPPA5	340168	broad.mit.edu	37	chr6	74063550	74063550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgcgagcctgtgttccGcgtacccagtctctgggcct	11	18	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74063550	T	T	74063550	1	4	121	0	1	0	0	0	0	0	0	0	4777	1102	38	3		3	DPPA5	6	74063550	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	3098528	74063550	97051517	181	112791											
DDX43	55510	broad.mit.edu	37	chr6	74117809	74117809	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaacttcgtcaatctgaaGaatataacctacttggtaat	6	7	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74117809	A	A	74117809	2	1	121	1	0	0	0	0	0	0	0	1	4396	933	33	4		4	DDX43	6	74117809	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	54259	74117809	96997258	182	112792											
COL12A1	1303	broad.mit.edu	37	chr6	75812360	75812360	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtccctgagggcctggagGaccctgggggcctggaggac	20	11	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75812360	T	T	75812360	3	4	121	1	0	0	0	0	1	0	0	0	3701	1174	41	3	867	3	COL12A1	6	75812360	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	1694551	75812360	95302707	183	112793											
IBTK	25998	broad.mit.edu	37	chr6	82950159	82950159	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggacatccaaagcatgcttCagggatcgacactttgatgt	10	9	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82950159	A	A	82950159	2	1	121	1	0	0	0	0	0	0	0	1	7546	813	29	3		3	IBTK	6	82950159	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	7137799	82950159	88164908	184	112794											
BACH2	60468	broad.mit.edu	37	chr6	90642501	90642501	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggatctgctcggggctctGgatgtctcggcaaacttcct	12	12	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90642501	A	A	90642501	4	1	121	1	0	0	0	0	0	1	0	0	1289	1357	47	4	377	4	BACH2	6	90642501	Nonsense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	7692342	90642501	80472566	185	112795											
EPHA7	2045	broad.mit.edu	37	chr6	94066623	94066623	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttactcccacagggaacaCattcgccctgctcccaactg	7	16	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94066623	G	G	94066623	3	3	121	1	0	0	0	0	1	0	0	0	5214	478	17	4	1912	4	EPHA7	6	94066623	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3424122	94066623	77048444	186	112796											
POU3F2	5454	broad.mit.edu	37	chr6	99282742	99282742	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggagcgctcagtccggctcCgagagtcatggcgaccgcag	15	14	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99282742	G	G	99282742	1	3	121	0	1	0	0	0	0	0	0	0	12371	667	23	4		4	POU3F2	6	99282742	5'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	5216119	99282742	71832325	187	112797											
FAM184A	79632	broad.mit.edu	37	chr6	119301415	119301415	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaattcttcaagctcttgcGtaagccgctgtcgttcttgc	8	12	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119301415	A	A	119301415	3	1	121	1	0	0	0	0	1	0	0	0	5557	1145	40	4	1269	4	FAM184A	6	119301415	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	20018673	119301415	51813652	188	112798											
C6orf170	221322	broad.mit.edu	37	chr6	121526351	121526351	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agactgtatttaactgatatCatttaaagaaaattaagtca	5	4	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121526351	G	G	121526351	1	3	121	0	1	0	0	0	0	0	0	0	2367	841	29	4		4	C6orf170	6	121526351	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2224936	121526351	49588716	189	112799											
LAMA2	3908	broad.mit.edu	37	chr6	129581984	129581984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtaagcttgcaagaatGtatccttagtgctttcaaag	9	6	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129581984	A	A	129581984	1	1	121	0	1	0	0	0	0	0	0	0	8678	1392	48	4		4	LAMA2	6	129581984	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	8055633	129581984	41533083	190	112800											
MED23	9439	broad.mit.edu	37	chr6	131914030	131914030	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctggaaccagaaaacagtCatcatccaatgtgcatcagc	7	11	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131914030	A	A	131914030	1	1	121	0	1	0	0	0	0	0	0	0	9534	841	29	3		3	MED23	6	131914030	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2332046	131914030	39201037	191	112801											
TCF21	6943	broad.mit.edu	37	chr6	134210599	134210599	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagatgttggaatgtgacGggttgaaaatggattcgaac	15	3	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134210599	A	A	134210599	3	1	121	1	0	0	0	0	1	0	0	0	15813	1116	39	4	66	4	TCF21	6	134210599	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2296569	134210599	36904468	192	112802											
BCLAF1	9774	broad.mit.edu	37	chr6	136599576	136599576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggagatttgctatatgggGatgaagaacgagaagaggat	15	3	0	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136599576	T	T	136599576	3	4	121	1	0	0	0	0	1	0	0	0	1388	1174	41	3	2359	3	BCLAF1	6	136599576	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2388977	136599576	34515491	193	112803											
PPIL4	85313	broad.mit.edu	37	chr6	149833181	149833181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttcttaggaacaaaccCatctctgcttagaactatcc	5	13	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149833181	A	A	149833181	1	1	121	0	1	0	0	0	0	0	0	0	12430	609	21	2		2	PPIL4	6	149833181	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	13233605	149833181	21281886	194	112804											
SYNE1	23345	broad.mit.edu	37	chr6	152730841	152730841	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataagtccacagcactgaccCtgactgtaatgattaaagaa	7	9	0	4	rs140418114		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152730841	G	G	152730841	3	3	121	1	0	0	0	0	1	0	0	0	15564	680	24	4	20648	4	SYNE1	6	152730841	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	2897660	152730841	18384226	195	112805											
SYNE1	23345	broad.mit.edu	37	chr6	152792795	152792795	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacttaatgatccaagacttCagctttgactctgcaagaac	6	10	2	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152792795	A	A	152792795	2	1	121	1	0	0	0	0	0	0	0	1	15564	813	29	3		3	SYNE1	6	152792795	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	61954	152792795	18322272	196	112806											
IGF2R	3482	broad.mit.edu	37	chr6	160464271	160464271	+	Frame_Shift_Del	DEL	G	-	-													atttgtcacagagtgctgcaGgaaggcaaggcacgagggtg							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160464271	-	-	160464271	7	5	121	1	0	1	0	1	0	0	0	0	7646	991	35	0	1618	0	IGF2R	6	160464271	Frame_Shift_Del	DEL	G	TCGA-44-6144-01A-11D-1753-08	7671476	160464271	10650796	197	112807											
PLG	5340	broad.mit.edu	37	chr6	161133949	161133949	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggaatcgagagcatctcCttctgccttgctaatagcaa	9	10	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161133949	T	T	161133949	1	4	121	0	1	0	0	0	0	0	0	0	12181	696	24	4		4	PLG	6	161133949	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	669678	161133949	9981118	198	112808											
DLL1	28514	broad.mit.edu	37	chr6	170597852	170597852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagaatctgtgtggagaGcttcaataatcagagagaag	13	5	3	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170597852	T	T	170597852	3	4	121	1	0	0	0	0	1	0	0	0	4606	971	34	3	1830	3	DLL1	6	170597852	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	9463903	170597852	517215	199	112809											
DGKB	1607	broad.mit.edu	37	chr7	14217692	14217692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgagccagccgccggCcagcacttttcaggcctgtg	12	15	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14217692	A	A	14217692	3	1	121	1	0	0	0	0	1	0	0	0	4506	739	26	3	231	3	DGKB	7	14217692	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08		14217692	144920971	200	112810											
DNAH11	8701	broad.mit.edu	37	chr7	21742341	21742341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttaggatcattacgactGgggacttcgtgctattaagt	10	6	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21742341	T	T	21742341	3	4	121	1	0	0	0	0	1	0	0	0	4639	1357	47	2	6362	2	DNAH11	7	21742341	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	7524649	21742341	137396322	201	112811											
DNAH11	8701	broad.mit.edu	37	chr7	21858037	21858037	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttagcttcatagtcaagCagtctattgaaatcttagtg	7	8	5	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21858037	G	G	21858037	1	3	121	0	1	0	0	0	0	0	0	0	4639	725	25	4		4	DNAH11	7	21858037	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	115696	21858037	137280626	202	112812											
GPNMB	10457	broad.mit.edu	37	chr7	23296665	23296665	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggagaagatggaatttcatCtacgtcttccacacacttgg	9	9	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23296665	G	G	23296665	3	3	121	1	0	0	0	0	1	0	0	0	6685	903	32	4	536	4	GPNMB	7	23296665	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	1438628	23296665	135841998	203	112813											
HOXA5	3202	broad.mit.edu	37	chr7	27182779	27182779	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctggcaggggcgtcctcctCggctccggacgccgtgccaa	15	16	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27182779	T	T	27182779	3	4	121	1	0	0	0	0	1	0	0	0	7362	893	31	4	372	4	HOXA5	7	27182779	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3886114	27182779	131955884	204	112814											
EVX1	2128	broad.mit.edu	37	chr7	27284569	27284569	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtggctgacagggtgtcccTtcccaaatcaccctcccacc	9	17	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27284569	A	A	27284569	1	1	121	0	1	0	0	0	0	0	0	0	5336	1624	56	5		5	EVX1	7	27284569	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	101790	27284569	131854094	205	112815											
PDE1C	5137	broad.mit.edu	37	chr7	31890287	31890287	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaattgttggtggttccGgtatgctcgtagtcatggat	14	5	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31890287	A	A	31890287	2	1	121	1	0	0	0	0	0	0	0	1	11729	1103	39	4		4	PDE1C	7	31890287	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	4605718	31890287	127248376	206	112816											
POLD2	5425	broad.mit.edu	37	chr7	44154947	44154947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacaaaagtagacatgcGggcactctgggaagatgaac	12	9	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44154947	T	T	44154947	3	4	121	1	0	0	0	0	1	0	0	0	12286	1116	39	1	221	1	POLD2	7	44154947	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	12264660	44154947	114983716	207	112817											
MYO1G	64005	broad.mit.edu	37	chr7	45011773	45011773	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaattgtatacagcagggtTtctctccaagtgcagttcat	9	8	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45011773	G	G	45011773	3	3	121	1	0	0	0	0	1	0	0	0	10168	1841	64	5	2454	5	MYO1G	7	45011773	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	856826	45011773	114126890	208	112818											
ABCA13	154664	broad.mit.edu	37	chr7	48450010	48450010	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcagtttgaaaattggtGaggatctttaaattgtgccc	9	5	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48450010	A	A	48450010	1	1	121	0	1	0	0	0	0	0	0	0	31	1305	45	4		4	ABCA13	7	48450010	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	3438237	48450010	110688653	209	112819											
ZNF716	441234	broad.mit.edu	37	chr7	57529506	57529506	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgggaaagcctttaccTtctcctcaactctaaatact	5	11	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57529506	C	C	57529506	3	2	121	1	0	0	0	0	1	0	0	0	18247	1609	56	5	1353	5	ZNF716	7	57529506	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	9079496	57529506	101609157	210	112820											
ZNF107	51427	broad.mit.edu	37	chr7	64168599	64168599	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaccttaccaatgtgcAgaatgtggcaaagcctttaa	9	8	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64168599	T	T	64168599	2	4	121	1	0	0	0	0	0	0	0	1	17841	175	7	5		5	ZNF107	7	64168599	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	6639093	64168599	94970064	211	112821											
CD36	948	broad.mit.edu	37	chr7	80108022	80108022	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcatttctctttaattgCtttttattttactctaataa	1	6	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80108022	G	G	80108022	1	3	121	0	1	0	0	0	0	0	0	0	3037	812	28	4		4	CD36	7	80108022	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	15939423	80108022	79030641	212	112822											
PCLO	27445	broad.mit.edu	37	chr7	82544816	82544816	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtctactgatgctatacttCtcagattttggaaaatgtct	7	7	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82544816	A	A	82544816	3	1	121	1	0	0	0	0	1	0	0	0	11677	912	32	3	3035	3	PCLO	7	82544816	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	2436794	82544816	76593847	213	112823											
CROT	54677	broad.mit.edu	37	chr7	87021086	87021086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaattgttctaaaggaaccGtggtctttgagtaactaact	8	6	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87021086	T	T	87021086	1	4	121	0	1	0	0	0	0	0	0	0	3926	1160	40	3		3	CROT	7	87021086	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	4476270	87021086	72117577	214	112824											
ABCB1	5243	broad.mit.edu	37	chr7	87160611	87160611	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catatttagtttgactcaccTtcccagaaccttctagttct	4	12	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87160611	A	A	87160611	3	1	121	1	0	0	0	0	1	0	0	0	40	1623	56	5	1190	5	ABCB1	7	87160611	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	139525	87160611	71978052	215	112825											
DYNC1I1	1780	broad.mit.edu	37	chr7	95499011	95499011	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctattagggccaacgtGggccaagagcccacgtgtcc	12	14	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95499011	A	A	95499011	1	1	121	0	1	0	0	0	0	0	0	0	4882	1363	47	4		4	DYNC1I1	7	95499011	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	8338400	95499011	63639652	216	112826											
TRRAP	8295	broad.mit.edu	37	chr7	98574614	98574614	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgttacaagaggaagataTgtgggctggtctgtggcaga	15	6	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98574614	C	C	98574614	3	2	121	1	0	0	0	0	1	0	0	0	16726	1464	51	5	8435	5	TRRAP	7	98574614	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	3075603	98574614	60564049	217	112827											
MEPCE	56257	broad.mit.edu	37	chr7	100030795	100030795	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggaatagtcattcctttGgttgaggcaagaaaaggccc	14	7	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100030795	C	C	100030795	1	2	121	0	1	0	0	0	0	0	0	0	9570	1363	47	4		4	MEPCE	7	100030795	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1456181	100030795	59107868	218	112828											
TFR2	7036	broad.mit.edu	37	chr7	100225340	100225340	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctcccccacatccctccCcagctctccctaccccccca	3	26	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100225340	G	G	100225340	1	3	121	0	1	0	0	0	0	0	0	0	15934	638	22	4		4	TFR2	7	100225340	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	194545	100225340	58913323	219	112829											
ZAN	7455	broad.mit.edu	37	chr7	100364484	100364484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttaggcagctccaagcCaagccaaccacacttcctag	6	16	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100364484	A	A	100364484	1	1	121	0	1	0	0	0	0	0	0	0	17640	609	21	2		2	ZAN	7	100364484	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	139144	100364484	58774179	220	112830											
LAMB1	3912	broad.mit.edu	37	chr7	107615775	107615775	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttaatttacaccgacactGgccagcaatgagaccagtag	8	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107615775	C	C	107615775	3	2	121	1	0	0	0	0	1	0	0	0	8682	1357	47	4	4183	4	LAMB1	7	107615775	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	7251291	107615775	51522888	221	112831											
FOXP2	93986	broad.mit.edu	37	chr7	114329913	114329913	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtccttagtgacaacagctAatcacagtccagaattagaa	7	9	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114329913	T	T	114329913	3	4	121	1	0	0	0	0	1	0	0	0	6087	362	13	5	2309	5	FOXP2	7	114329913	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	6714138	114329913	44808750	222	112832											
SLC13A1	6561	broad.mit.edu	37	chr7	122768927	122768927	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgcagaccaaccaggaaCaaatccggggtctcgactaa	10	11	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122768927	T	T	122768927	3	4	121	1	0	0	0	0	1	0	0	0	14504	478	17	4	706	4	SLC13A1	7	122768927	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	8439014	122768927	36369736	223	112833											
IQUB	154865	broad.mit.edu	37	chr7	123143273	123143273	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagtttggacagtgacaGttatgatttgagagacatca	10	6	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123143273	T	T	123143273	3	4	121	1	0	0	0	0	1	0	0	0	7890	1029	36	3	1738	3	IQUB	7	123143273	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	374346	123143273	35995390	224	112834											
AHCYL2	23382	broad.mit.edu	37	chr7	129037010	129037010	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatataaactttatctcctTgactagttgtttggcccagg	7	8	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129037010	G	G	129037010	1	3	121	0	1	0	0	0	0	0	0	0	411	1827	63	5		5	AHCYL2	7	129037010	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	5893737	129037010	30101653	225	112835											
TAS2R38	5726	broad.mit.edu	37	chr7	141672991	141672991	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagttgtgactgtgaagtGaggtctgctaaaaaagcacc	11	8	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141672991	T	T	141672991	3	4	121	1	0	0	0	0	1	0	0	0	15694	1290	45	3	506	3	TAS2R38	7	141672991	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	12635981	141672991	17465672	226	112836											
ZNF746	155061	broad.mit.edu	37	chr7	149174592	149174592	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccccatgctgccacgagcCctcccctgtccctcctgtga	7	21	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149174592	T	T	149174592	1	4	121	0	1	0	0	0	0	0	0	0	18258	638	22	4		4	ZNF746	7	149174592	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	7501601	149174592	9964071	227	112837											
REPIN1	29803	broad.mit.edu	37	chr7	150069234	150069234	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagtgcggccgccgcttcCggcacaaacccaacctgctg	11	16	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150069234	T	T	150069234	3	4	121	1	0	0	0	0	1	0	0	0	13335	643	23	4	1081	4	REPIN1	7	150069234	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	894642	150069234	9069429	228	112838											
CSMD1	64478	broad.mit.edu	37	chr8	2944743	2944743	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatgcactttgcttccaacCgctcctgcagtcctgtttag	7	13	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2944743	T	T	2944743	2	4	121	1	0	0	0	0	0	0	0	1	3978	639	23	4		4	CSMD1	8	2944743	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08		2944743	143419279	229	112839											
CSMD1	64478	broad.mit.edu	37	chr8	4645247	4645247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgctgccaataatgacccAcagtggtctgaggaacagct	11	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4645247	T	T	4645247	1	4	121	0	1	0	0	0	0	0	0	0	3978	174	6	5		5	CSMD1	8	4645247	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	1700504	4645247	141718775	230	112840											
DEFA4	1669	broad.mit.edu	37	chr8	6793627	6793627	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttctgttcgccggcagaatActaatctgcaagagcagacc	10	11	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6793627	T	T	6793627	3	4	121	1	0	0	0	0	1	0	0	0	4424	391	14	5	88	5	DEFA4	8	6793627	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	2148380	6793627	139570395	231	112841											
PDLIM2	64236	broad.mit.edu	37	chr8	22452027	22452027	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccttaacctttttgtaaaGatgcccgttttacaggagga	8	8	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22452027	C	C	22452027	1	2	121	0	1	0	0	0	0	0	0	0	11774	957	33	4		4	PDLIM2	8	22452027	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	15658400	22452027	123911995	232	112842											
ADAM28	10863	broad.mit.edu	37	chr8	24167591	24167591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaacctggactaatcagCgtttgctctcaaatgacttg	7	11	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24167591	A	A	24167591	1	1	121	0	1	0	0	0	0	0	0	0	246	783	27	3		3	ADAM28	8	24167591	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1715564	24167591	122196431	233	112843											
C8orf41	80185	broad.mit.edu	37	chr8	33371026	33371026	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgagcgtgatgattgggTgttcatacgcttgtgtgaga	14	5	2	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33371026	C	C	33371026	1	2	121	0	1	0	0	0	0	0	0	0	2453	1711	59	5		5	C8orf41	8	33371026	5'Flank	SNP	T	TCGA-44-6144-01A-11D-1753-08	9203435	33371026	112992996	234	112844											
LYPLA1	10434	broad.mit.edu	37	chr8	54965335	54965335	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgaaaagacaagcagggAaagtcaatggaacacacatg	10	9	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54965335	G	G	54965335	1	3	121	0	1	0	0	0	0	0	0	0	9204	261	9	5		5	LYPLA1	8	54965335	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	21594309	54965335	91398687	235	112845											
CHD7	55636	broad.mit.edu	37	chr8	61735118	61735118	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaactatccagtccattaCatttctctatgagatatatt	3	8	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61735118	G	G	61735118	3	3	121	1	0	0	0	0	1	0	0	0	3361	478	17	4	3056	4	CHD7	8	61735118	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	6769783	61735118	84628904	236	112846											
TRAM1	23471	broad.mit.edu	37	chr8	71510526	71510526	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacacaaatacacaaaaataTacacaaggttataaaaacag	4	7	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71510526	C	C	71510526	1	2	121	0	1	0	0	0	0	0	0	0	16575	1421	49	5		5	TRAM1	8	71510526	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	9775408	71510526	74853496	237	112847											
NECAB1	64168	broad.mit.edu	37	chr8	91940579	91940580	+	Intron	DNP	CC	AA	AA													cactcttcaagatattgttaCctaatattccccattgcttt							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	91940580	AA	AA	91940579	1	1	121	0	1	0	0	0	0	0	0	0	10399	522	18	3		3	NECAB1	8	91940579	Intron	DNP	CC	TCGA-44-6144-01A-11D-1753-08	20430053	91940579	54423443	238	112848											
SNX31	169166	broad.mit.edu	37	chr8	101629773	101629773	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctcctggaaggtaaccGtatcccattctctgctttcc	8	13	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101629773	T	T	101629773	1	4	121	0	1	0	0	0	0	0	0	0	15015	1160	40	3		3	SNX31	8	101629773	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	9689194	101629773	44734249	239	112849											
DCAF13	25879	broad.mit.edu	37	chr8	104433228	104433228	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttggaatctaactcagcGgaattgtatccgtacaatac	7	8	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104433228	T	T	104433228	3	4	121	1	0	0	0	0	1	0	0	0	4299	1116	39	1	762	1	DCAF13	8	104433228	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2803455	104433228	41930794	240	112850											
LRP12	29967	broad.mit.edu	37	chr8	105511462	105511462	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcctaattaaatgaacaCtacttagaagattagctccg	5	9	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105511462	T	T	105511462	1	4	121	0	1	0	0	0	0	0	0	0	9041	580	20	4		4	LRP12	8	105511462	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1078234	105511462	40852560	241	112851											
CSMD3	114788	broad.mit.edu	37	chr8	113599348	113599348	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctgaaatattgattcCctttcctgcttgaacctgaa	7	10	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113599348	A	A	113599348	4	1	121	1	0	0	0	0	0	1	0	0	3980	632	22	2	7487	2	CSMD3	8	113599348	Nonsense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	8087886	113599348	32764674	242	112852											
EIF3H	8667	broad.mit.edu	37	chr8	117671091	117671091	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcaatggcatgctggtAactaaactgagagtccagga	10	8	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117671091	T	T	117671091	3	4	121	1	0	0	0	0	1	0	0	0	5060	362	13	5	664	5	EIF3H	8	117671091	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	4071743	117671091	28692931	243	112853											
COL14A1	7373	broad.mit.edu	37	chr8	121215955	121215955	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgtgtaaggggtgaaAaacgcggatgtgaatgagct	14	6	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121215955	G	G	121215955	2	3	121	1	0	0	0	0	0	0	0	1	3703	11	1	5		5	COL14A1	8	121215955	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	3544864	121215955	25148067	244	112854											
ATAD2	29028	broad.mit.edu	37	chr8	124384054	124384054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctagccctcaatgacCgagtaactggaatcactttg	8	10	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124384054	A	A	124384054	3	1	121	1	0	0	0	0	1	0	0	0	1075	652	23	1	3880	1	ATAD2	8	124384054	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3168099	124384054	21979968	245	112855											
ASAP1	50807	broad.mit.edu	37	chr8	131140160	131140160	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaagctcgttcaaataTggggacaaaaacctgatgag	10	6	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131140160	C	C	131140160	1	2	121	0	1	0	0	0	0	0	0	0	1014	1479	51	5		5	ASAP1	8	131140160	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	6756106	131140160	15223862	246	112856											
EFR3A	23167	broad.mit.edu	37	chr8	133014943	133014943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaaatagcagcacagtGtgaatccaaagtaagtgaag	11	5	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133014943	A	A	133014943	3	1	121	1	0	0	0	0	1	0	0	0	4998	1377	48	4	2382	4	EFR3A	8	133014943	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	1874783	133014943	13349079	247	112857											
FAM135B	51059	broad.mit.edu	37	chr8	139189617	139189617	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgaaatgtcaggactgcaAgtttttggtgctccatgtaa	10	8	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139189617	G	G	139189617	3	3	121	1	0	0	0	0	1	0	0	0	5495	72	3	5	3184	5	FAM135B	8	139189617	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	6174674	139189617	7174405	248	112858											
CYP11B1	1584	broad.mit.edu	37	chr8	143959113	143959113	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctggggcagcagccccagTgaagtgtctgcatcttctgc	12	13	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143959113	A	A	143959113	1	1	121	0	1	0	0	0	0	0	0	0	4178	1711	59	5		5	CYP11B1	8	143959113	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	4769496	143959113	2404909	249	112859											
PLEC	5339	broad.mit.edu	37	chr8	144994080	144994080	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacggaggccgctgaaggaCagcctctcctgccgcagggt	15	14	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144994080	A	A	144994080	2	1	121	1	0	0	0	0	0	0	0	1	12147	465	17	3		3	PLEC	8	144994080	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	1034967	144994080	1369942	250	112860											
DNAI1	27019	broad.mit.edu	37	chr9	34490299	34490299	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctatcctaggacagggcttGccccatctcccggttttcta	8	15	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34490299	C	C	34490299	1	2	121	0	1	0	0	0	0	0	0	0	4649	1334	46	4		4	DNAI1	9	34490299	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08		34490299	106723132	251	112861											
FAM75A6	389730	broad.mit.edu	37	chr9	43628678	43628678	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagtctcctccaggcctctCgggcactctctaccagctgg	10	16	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43628678	A	A	43628678	2	1	121	1	0	0	0	0	0	0	0	1	5674	871	31	3		3	FAM75A6	9	43628678	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	9138379	43628678	97584753	252	112862											
C9orf85	138241	broad.mit.edu	37	chr9	74587869	74587869	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagttcgagaccagcctGgccaacatggcggaacccca	12	14	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74587869	T	T	74587869	1	4	121	0	1	0	0	0	0	0	0	0	2527	1363	47	2		2	C9orf85	9	74587869	3'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	30959191	74587869	66625562	253	112863											
GOLM1	51280	broad.mit.edu	37	chr9	88667597	88667597	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accaatgatggggcctgtccCcaacccagcgctgctgtcag	11	15	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88667597	G	G	88667597	1	3	121	0	1	0	0	0	0	0	0	0	6631	638	22	4		4	GOLM1	9	88667597	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	14079728	88667597	52545834	254	112864											
S1PR3	1903	broad.mit.edu	37	chr9	91616648	91616648	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccattctgggctggaactGcctgcacaatctccctgact	9	15	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91616648	A	A	91616648	3	1	121	1	0	0	0	0	1	0	0	0	13906	1319	46	4	535	4	S1PR3	9	91616648	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2949051	91616648	49596783	255	112865											
HEMGN	55363	broad.mit.edu	37	chr9	100693001	100693001	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattttaggagccagatcttCtcgtttagccatatcttggt	8	9	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100693001	A	A	100693001	4	1	121	1	0	0	0	0	0	1	0	0	7117	922	32	3	786	3	HEMGN	9	100693001	Nonsense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	9076353	100693001	40520430	256	112866											
MUSK	4593	broad.mit.edu	37	chr9	113547438	113547438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttaaaattaagcaccccCatcatgatctttacaaatgt	4	10	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113547438	A	A	113547438	1	1	121	0	1	0	0	0	0	0	0	0	10083	609	21	2		2	MUSK	9	113547438	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	12854437	113547438	27665993	257	112867											
ASTN2	23245	broad.mit.edu	37	chr9	119943077	119943077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcttctcagccaccatGtcttcaaattcatcaacatt	4	13	5	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119943077	T	T	119943077	1	4	121	0	1	0	0	0	0	0	0	0	1069	1392	48	3		3	ASTN2	9	119943077	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	6395639	119943077	21270354	258	112868											
DAB2IP	153090	broad.mit.edu	37	chr9	124543753	124543753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctataggttgatgtccGtggaggaagaactgaagaag	15	5	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124543753	T	T	124543753	3	4	121	1	0	0	0	0	1	0	0	0	4252	1145	40	3	3299	3	DAB2IP	9	124543753	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	4600676	124543753	16669678	259	112869											
DENND1A	57706	broad.mit.edu	37	chr9	126143842	126143842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggtctctggcctgttgagGagcagagggctgcagtgttg	19	7	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126143842	T	T	126143842	3	4	121	1	0	0	0	0	1	0	0	0	4466	1174	41	3	134	3	DENND1A	9	126143842	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	1600089	126143842	15069589	260	112870											
LMX1B	4010	broad.mit.edu	37	chr9	129458382	129458382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacctgctgccctagggCtcaggcagcatggccagcac	12	16	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129458382	A	A	129458382	1	1	121	0	1	0	0	0	0	0	0	0	8936	812	28	3		3	LMX1B	9	129458382	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	3314540	129458382	11755049	261	112871											
ABL1	25	broad.mit.edu	37	chr9	133600327	133600327	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgcttggcggggtagccAcatttgccacaggtagactt	13	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133600327	T	T	133600327	1	4	121	0	1	0	0	0	0	0	0	0	92	174	6	5		5	ABL1	9	133600327	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	4141945	133600327	7613104	262	112872											
LAMC3	10319	broad.mit.edu	37	chr9	133942411	133942411	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggctctttgggcacccCcagccctgccaccagtgcca	11	18	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133942411	A	A	133942411	2	1	121	1	0	0	0	0	0	0	0	1	8688	610	22	2		2	LAMC3	9	133942411	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	342084	133942411	7271020	263	112873											
CEL	1056	broad.mit.edu	37	chr9	135947049	135947049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccgcccacgggtgactcCggggccccccctgtgccccc	13	21	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135947049	A	A	135947049	2	1	121	1	0	0	0	0	0	0	0	1	3239	639	23	1		1	CEL	9	135947049	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	2004638	135947049	5266382	264	112874											
FCN2	2220	broad.mit.edu	37	chr9	137777775	137777775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggggcttgggggtcgggGgccctgaatgggggtgcccc	22	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137777775	T	T	137777775	1	4	121	0	1	0	0	0	0	0	0	0	5849	1247	43	2		2	FCN2	9	137777775	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1830726	137777775	3435656	265	112875											
NOTCH1	4851	broad.mit.edu	37	chr9	139409124	139409124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcaggggttgcccgcaCactcatcgatgttgatgtta	13	9	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139409124	A	A	139409124	3	1	121	1	0	0	0	0	1	0	0	0	10642	478	17	3	5710	3	NOTCH1	9	139409124	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	1631349	139409124	1804307	266	112876											
DIP2C	22982	broad.mit.edu	37	chr10	433614	433614	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtatggggagggggactCctgtgtggacaggcagggca	19	7	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	433614	A	A	433614	1	1	121	0	1	0	0	0	0	0	0	0	4569	870	30	3		3	DIP2C	10	433614	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08		433614	135101133	267	112877											
DIP2C	22982	broad.mit.edu	37	chr10	435817	435817	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataagttcatgtcagcggaGctgggcacaaacttcacgct	10	10	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	435817	C	C	435817	1	2	121	0	1	0	0	0	0	0	0	0	4569	986	34	4		4	DIP2C	10	435817	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2203	435817	135098930	268	112878											
CDC123	8872	broad.mit.edu	37	chr10	12252328	12252328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacgcttacggtaagaGcacagcagactcagcgtggg	13	12	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12252328	T	T	12252328	1	4	121	0	1	0	0	0	0	0	0	0	3085	986	34	3		3	CDC123	10	12252328	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	11816511	12252328	123282419	269	112879											
OPTN	10133	broad.mit.edu	37	chr10	13160733	13160733	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggagcttggcactgggggtCccaggaccagctgtgcttgt	16	10	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13160733	T	T	13160733	1	4	121	0	1	0	0	0	0	0	0	0	10983	870	30	4		4	OPTN	10	13160733	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	908405	13160733	122374014	270	112880											
CUBN	8029	broad.mit.edu	37	chr10	16870805	16870805	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtttgttttactcacgCctccgcagtatggtccagag	9	10	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16870805	G	G	16870805	3	3	121	1	0	0	0	0	1	0	0	0	4084	753	26	4	116	4	CUBN	10	16870805	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3710072	16870805	118663942	271	112881											
FAM23A	653567	broad.mit.edu	37	chr10	17813427	17813427	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagattatgagattttatAatttcttgttattggaattt	6	2	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17813427	G	G	17813427	1	3	121	0	1	0	0	0	0	0	0	0	5594	377	13	5		5	FAM23A	10	17813427	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	942622	17813427	117721320	272	112882											
C10orf72	196740	broad.mit.edu	37	chr10	50285321	50285321	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgaccagcatgaagagcaGaatgctgaggatccccacgc	12	11	0	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50285321	C	C	50285321	3	2	121	1	0	0	0	0	1	0	0	0	1626	933	33	4	405	4	C10orf72	10	50285321	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	32471894	50285321	85249426	273	112883											
PCDH15	65217	broad.mit.edu	37	chr10	55583185	55583185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctttcatgagaaagatGtttttatggctctcattact	7	7	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55583185	T	T	55583185	1	4	121	0	1	0	0	0	0	0	0	0	11605	1392	48	3		3	PCDH15	10	55583185	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	5297864	55583185	79951562	274	112884											
PCDH15	65217	broad.mit.edu	37	chr10	55583306	55583306	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggcagggcagaaaaatctTagagttgtgagaagaatgag	14	3	1	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55583306	A	A	55583306	1	1	121	0	1	0	0	0	0	0	0	0	11605	1769	61	5		5	PCDH15	10	55583306	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	121	55583306	79951441	275	112885											
PCDH15	65217	broad.mit.edu	37	chr10	56360540	56360540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattctcccataggggctcCagacattgtattttactttg	8	9	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56360540	A	A	56360540	1	1	121	0	1	0	0	0	0	0	0	0	11605	609	21	2		2	PCDH15	10	56360540	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	777234	56360540	79174207	276	112886											
MYPN	84665	broad.mit.edu	37	chr10	69948775	69948775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatgatgagatccccacGggcaagtgtattgctcccat	9	12	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69948775	T	T	69948775	2	4	121	1	0	0	0	0	0	0	0	1	10192	1103	39	1		1	MYPN	10	69948775	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	13588235	69948775	65585972	277	112887											
KIAA0913	23053	broad.mit.edu	37	chr10	75552466	75552466	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagcccctgcagttggAgaggaggatgatgactacca	15	9	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75552466	T	T	75552466	2	4	121	1	0	0	0	0	0	0	0	1	8270	291	11	5		5	KIAA0913	10	75552466	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	5603691	75552466	59982281	278	112888											
KCNMA1	3778	broad.mit.edu	37	chr10	78674617	78674617	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttgaaagggctaagaaaTaaaccaacctcctcatatcc	6	10	1	2	rs113613300		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78674617	C	C	78674617	1	2	121	0	1	0	0	0	0	0	0	0	8143	1421	49	5		5	KCNMA1	10	78674617	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	3122151	78674617	56860130	279	112889											
KCNMA1	3778	broad.mit.edu	37	chr10	78844415	78844415	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgatattcgaggcatcCtccgcatccgggtcagcgca	10	14	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78844415	T	T	78844415	2	4	121	1	0	0	0	0	0	0	0	1	8143	680	24	4		4	KCNMA1	10	78844415	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	169798	78844415	56690332	280	112890											
DNTT	1791	broad.mit.edu	37	chr10	98082547	98082547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatcttattacttattctGgctggttgtattagtcagct	7	6	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98082547	T	T	98082547	1	4	121	0	1	0	0	0	0	0	0	0	4720	1363	47	2		2	DNTT	10	98082547	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	19238132	98082547	37452200	281	112891											
INPP5F	22876	broad.mit.edu	37	chr10	121579120	121579120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattctctatgaagctgtctGgatcggtctccttttcccat	7	11	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121579120	T	T	121579120	1	4	121	0	1	0	0	0	0	0	0	0	7828	1363	47	2		2	INPP5F	10	121579120	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	23496573	121579120	13955627	282	112892											
CPXM2	119587	broad.mit.edu	37	chr10	125521758	125521758	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagctgtcaaacagggacAtagtcgaaaaagcagtgctt	10	10	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125521758	G	G	125521758	1	3	121	0	1	0	0	0	0	0	0	0	3870	232	8	5		5	CPXM2	10	125521758	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	3942638	125521758	10012989	283	112893											
BRSK2	9024	broad.mit.edu	37	chr11	1466589	1466589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcagatccgctcgctgcCcagcctggaggacatcgacc	13	15	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1466589	A	A	1466589	3	1	121	1	0	0	0	0	1	0	0	0	1533	623	22	2	916	2	BRSK2	11	1466589	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08		1466589	133539927	284	112894											
TH	7054	broad.mit.edu	37	chr11	2185528	2185528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacaccctccagggagcGccgcacggcctgggggctgt	16	15	0	0	rs78779683	by1000genomes	TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2185528	T	T	2185528	3	4	121	1	0	0	0	0	1	0	0	0	15961	1087	38	3	68	3	TH	11	2185528	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	718939	2185528	132820988	285	112895											
OSBPL5	114879	broad.mit.edu	37	chr11	3114834	3114834	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtctgcggacctccccgctCggggtccagaaaagcgcact	12	15	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3114834	T	T	3114834	2	4	121	1	0	0	0	0	0	0	0	1	11374	871	31	4		4	OSBPL5	11	3114834	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	929306	3114834	131891682	286	112896											
STIM1	6786	broad.mit.edu	37	chr11	4091486	4091486	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgccagttcttgggaacctCctatttccacctgggtgtga	10	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4091486	T	T	4091486	1	4	121	0	1	0	0	0	0	0	0	0	15401	870	30	4		4	STIM1	11	4091486	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	976652	4091486	130915030	287	112897											
DENND5A	23258	broad.mit.edu	37	chr11	9228271	9228271	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattctacgttctcaggataTcgtgcaaggaccttagattt	8	9	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9228271	A	A	9228271	2	1	121	1	0	0	0	0	0	0	0	1	4476	1422	50	5		5	DENND5A	11	9228271	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	5136785	9228271	125778245	288	112898											
INSC	387755	broad.mit.edu	37	chr11	15212194	15212194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgttccactaagatgagCagagggtagaggtggtgagt	17	4	0	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15212194	A	A	15212194	1	1	121	0	1	0	0	0	0	0	0	0	7834	725	25	3		3	INSC	11	15212194	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	5983923	15212194	119794322	289	112899											
SLC6A5	9152	broad.mit.edu	37	chr11	20629074	20629074	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctaatagccatatactaCaatgtgattatttgctatac	5	8	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20629074	A	A	20629074	4	1	121	1	0	0	0	0	0	1	0	0	14801	489	17	3	879	3	SLC6A5	11	20629074	Nonsense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	5416880	20629074	114377442	290	112900											
SLC5A12	159963	broad.mit.edu	37	chr11	26743035	26743035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaggaaggatgccccaaagCggtagacttcagaaggggtc	14	9	1	2	rs142065702		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26743035	A	A	26743035	3	1	121	1	0	0	0	0	1	0	0	0	14778	768	27	3	1689	3	SLC5A12	11	26743035	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	6113961	26743035	108263481	291	112901											
BBOX1	8424	broad.mit.edu	37	chr11	27148755	27148755	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgatgtgaaccaagcagcAgctgtgttttgcatgttaca	10	8	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27148755	G	G	27148755	1	3	121	0	1	0	0	0	0	0	0	0	1339	203	7	5		5	BBOX1	11	27148755	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	405720	27148755	107857761	292	112902											
SYT13	57586	broad.mit.edu	37	chr11	45277246	45277246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggatgaacagctcctctGtgacctgcctcttgaggcga	13	11	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45277246	T	T	45277246	3	4	121	1	0	0	0	0	1	0	0	0	15588	1377	48	3	920	3	SYT13	11	45277246	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	18128491	45277246	89729270	293	112903											
PACSIN3	29763	broad.mit.edu	37	chr11	47204066	47204066	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggtccccgcacagccgGtgcccgtcctccacccgctg	10	21	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47204066	A	A	47204066	2	1	121	1	0	0	0	0	0	0	0	1	11470	1252	44	4		4	PACSIN3	11	47204066	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	1926820	47204066	87802450	294	112904											
OR5L1	219437	broad.mit.edu	37	chr11	55579752	55579752	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcaatagtggagatgcTgacaaagtggccaccgtgtt	13	8	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579752	A	A	55579752	2	1	121	1	0	0	0	0	0	0	0	1	11264	1567	55	5		5	OR5L1	11	55579752	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	8375686	55579752	79426764	295	112905											
OR5L2	26338	broad.mit.edu	37	chr11	55595317	55595317	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggccactttgaatgagaGtgttaccatcatgatcatcc	10	9	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595317	A	A	55595317	3	1	121	1	0	0	0	0	1	0	0	0	11265	1029	36	4	625	4	OR5L2	11	55595317	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	15565	55595317	79411199	296	112906											
OR5I1	10798	broad.mit.edu	37	chr11	55703175	55703175	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaggtcttcttcctcccActgaaagagcggatctttaa	8	10	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55703175	T	T	55703175	3	4	121	1	0	0	0	0	1	0	0	0	11258	156	6	5	245	5	OR5I1	11	55703175	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	107858	55703175	79303341	297	112907											
OR8I2	120586	broad.mit.edu	37	chr11	55860877	55860877	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtcttttcttgatgtttCtcttcatttatctattcact	3	9	7	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55860877	A	A	55860877	3	1	121	1	0	0	0	0	1	0	0	0	11334	913	32	3	96	3	OR8I2	11	55860877	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	157702	55860877	79145639	298	112908											
OR8I2	120586	broad.mit.edu	37	chr11	55861048	55861049	+	Missense_Mutation	DNP	CG	TT	TT													tggtgaatttccaatccaatCggagatccatctcctttgtt					rs138846423		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55861049	TT	TT	55861048	3	4	121	1	0	0	0	0	1	0	0	0	11334	875	31	4	267	4	OR8I2	11	55861048	Missense_Mutation	DNP	CG	TCGA-44-6144-01A-11D-1753-08	171	55861048	79145468	299	112909											
OR8J3	81168	broad.mit.edu	37	chr11	55904455	55904455	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccatagaaaaccgtgactGctatcatatgcgaagcgcag	9	11	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55904455	A	A	55904455	3	1	121	1	0	0	0	0	1	0	0	0	11336	1319	46	4	209	4	OR8J3	11	55904455	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	43407	55904455	79102061	300	112910											
OR1S2	219958	broad.mit.edu	37	chr11	57971562	57971562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgatgttcagcctggttgGagagtcccaggagaatgaat	13	6	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57971562	T	T	57971562	3	4	121	1	0	0	0	0	1	0	0	0	11067	1174	41	3	888	3	OR1S2	11	57971562	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2067107	57971562	77034954	301	112911											
OR5A2	219981	broad.mit.edu	37	chr11	59190311	59190311	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttaagttccaggccaacGtcaggaggtagagccccaga	13	11	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59190311	C	C	59190311	3	2	121	1	0	0	0	0	1	0	0	0	11234	1145	40	4	860	4	OR5A2	11	59190311	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	1218749	59190311	75816205	302	112912											
MARK2	2011	broad.mit.edu	37	chr11	63666048	63666048	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtatgtggcccctgttgcttCttgacttaaggcttggcctt	11	10	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63666048	T	T	63666048	1	4	121	0	1	0	0	0	0	0	0	0	9405	928	32	4		4	MARK2	11	63666048	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	4475737	63666048	71340468	303	112913											
CTSW	1521	broad.mit.edu	37	chr11	65649363	65649363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagactcaagcaattccccCgacccctcagccttctaagt	5	17	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65649363	A	A	65649363	1	1	121	0	1	0	0	0	0	0	0	0	4076	667	23	1		1	CTSW	11	65649363	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1983315	65649363	69357153	304	112914											
RIN1	9610	broad.mit.edu	37	chr11	66099662	66099662	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagacacaggacagggcCctgggtggggcttgctggcg	19	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66099662	A	A	66099662	1	1	121	0	1	0	0	0	0	0	0	0	13482	638	22	2		2	RIN1	11	66099662	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	450299	66099662	68906854	305	112915											
KDM2A	22992	broad.mit.edu	37	chr11	67013473	67013473	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagcccagactgcctcactcAgtcacatgttccctctgtgg	8	15	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67013473	T	T	67013473	2	4	121	1	0	0	0	0	0	0	0	1	8194	175	7	5		5	KDM2A	11	67013473	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	913811	67013473	67993043	306	112916											
DLG2	1740	broad.mit.edu	37	chr11	83183791	83183791	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctgccttgtaacaggctCataggaaagaatgaggtctt	10	8	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83183791	A	A	83183791	4	1	121	1	0	0	0	0	0	1	0	0	4595	835	29	3	628	3	DLG2	11	83183791	Nonsense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	16170318	83183791	51822725	307	112917											
TYR	7299	broad.mit.edu	37	chr11	88911127	88911128	+	Missense_Mutation	DNP	CC	AA	AA													aggactagaggaagaatgctCctggctgttttgtactgcct					rs35541275		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	88911128	AA	AA	88911127	3	1	121	1	0	0	0	0	1	0	0	0	16939	842	30	3	8	3	TYR	11	88911127	Missense_Mutation	DNP	CC	TCGA-44-6144-01A-11D-1753-08	5727336	88911127	46095389	308	112918											
MMP20	9313	broad.mit.edu	37	chr11	102482490	102482490	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtaccacaatacctccAttttcaaaagatatcataat	2	11	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102482490	G	G	102482490	2	3	121	1	0	0	0	0	0	0	0	1	9752	214	8	5		5	MMP20	11	102482490	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	13571363	102482490	32524026	309	112919											
DDI1	414301	broad.mit.edu	37	chr11	103908544	103908544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggatatgcttctaggcCtagatatgctccggagacat	10	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103908544	A	A	103908544	3	1	121	1	0	0	0	0	1	0	0	0	4361	680	24	2	996	2	DDI1	11	103908544	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	1426054	103908544	31097972	310	112920											
FAM55B	120406	broad.mit.edu	37	chr11	114568806	114568806	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accatattatcctgaaccaaGggaacatcttcaaaaaatat	4	9	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114568806	A	A	114568806	3	1	121	1	0	0	0	0	1	0	0	0	5636	1000	35	4	182	4	FAM55B	11	114568806	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	10660262	114568806	20437710	311	112921											
UBE4A	9354	broad.mit.edu	37	chr11	118257352	118257352	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgaagtactgcttccCcccaaaaaagtaatggccaa	8	11	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118257352	T	T	118257352	1	4	121	0	1	0	0	0	0	0	0	0	17008	638	22	4		4	UBE4A	11	118257352	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	3688546	118257352	16749164	312	112922											
VPS11	55823	broad.mit.edu	37	chr11	118949443	118949443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggaatttcagggaaagGggaagaatccaagtcatttt	13	4	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118949443	T	T	118949443	1	4	121	0	1	0	0	0	0	0	0	0	17315	1247	43	2		2	VPS11	11	118949443	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	692091	118949443	16057073	313	112923											
OR10G8	219869	broad.mit.edu	37	chr11	123900870	123900870	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcactatttgtgtgatgcaCcgcccatcctgaaactggcc	9	13	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123900870	T	T	123900870	3	4	121	1	0	0	0	0	1	0	0	0	10997	507	18	4	543	4	OR10G8	11	123900870	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	4951427	123900870	11105646	314	112924											
GLB1L2	89944	broad.mit.edu	37	chr11	134241511	134241511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctgtaggtggagagggCgagtgtggctttctgcccag	17	8	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134241511	A	A	134241511	1	1	121	0	1	0	0	0	0	0	0	0	6493	783	27	3		3	GLB1L2	11	134241511	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	10340641	134241511	765005	315	112925											
PRMT8	56341	broad.mit.edu	37	chr12	3701463	3701463	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagattacctcactgtccGgaggggggaggaaatctacg	15	8	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3701463	A	A	3701463	3	1	121	1	0	0	0	0	1	0	0	0	12648	1116	39	4	1080	4	PRMT8	12	3701463	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08		3701463	130150432	316	112926											
FGF23	8074	broad.mit.edu	37	chr12	4488427	4488427	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataagtggttcctgggcagAaagctaggagggttggatta	15	4	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4488427	G	G	4488427	1	3	121	0	1	0	0	0	0	0	0	0	5909	261	9	5		5	FGF23	12	4488427	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	786964	4488427	129363468	317	112927											
COPS7A	50813	broad.mit.edu	37	chr12	6833886	6833886	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctcctagccaagtcgGccaagggggcagcgctggcc	14	14	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6833886	A	A	6833886	3	1	121	1	0	0	0	0	1	0	0	0	3770	1203	42	4	66	4	COPS7A	12	6833886	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2345459	6833886	127018009	318	112928											
CLEC2D	29121	broad.mit.edu	37	chr12	9840645	9840645	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggttttgtgactcacaagAtgctgatcttgctcaggttg	12	7	3	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9840645	G	G	9840645	3	3	121	1	0	0	0	0	1	0	0	0	3540	333	12	5	330	5	CLEC2D	12	9840645	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	3006759	9840645	124011250	319	112929											
PTPRO	5800	broad.mit.edu	37	chr12	15701955	15701955	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtcaatctattaccaactCaactatgaaatatattttta	2	8	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15701955	T	T	15701955	1	4	121	0	1	0	0	0	0	0	0	0	12917	841	29	4		4	PTPRO	12	15701955	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	5861310	15701955	118149940	320	112930											
LDHB	3945	broad.mit.edu	37	chr12	21807503	21807503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatgctgatagcacacgCcataccaacttgtccaacac	6	14	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21807503	A	A	21807503	3	1	121	1	0	0	0	0	1	0	0	0	8773	739	26	3	929	3	LDHB	12	21807503	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	6105548	21807503	112044392	321	112931											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	121	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3590782	25398285	108453610	322	112932											
IFLTD1	160492	broad.mit.edu	37	chr12	25671726	25671726	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacaagcactcttttaactGacctgaggctcgattaggtc	9	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25671726	T	T	25671726	1	4	121	0	1	0	0	0	0	0	0	0	7600	1305	45	3		3	IFLTD1	12	25671726	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	273441	25671726	108180169	323	112933											
RASSF8	11228	broad.mit.edu	37	chr12	26217418	26217418	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgacaagttattcttacCttttttacataggtcgaact	5	7	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26217418	G	G	26217418	1	3	121	0	1	0	0	0	0	0	0	0	13200	696	24	4		4	RASSF8	12	26217418	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	545692	26217418	107634477	324	112934											
ITPR2	3709	broad.mit.edu	37	chr12	26572005	26572005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctatagaagaattcatGgacaaaaaggcccagcatgc	10	8	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26572005	T	T	26572005	3	4	121	1	0	0	0	0	1	0	0	0	7991	1348	47	2	1050	2	ITPR2	12	26572005	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	354587	26572005	107279890	325	112935											
ITPR2	3709	broad.mit.edu	37	chr12	26775077	26775077	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtctccaggaaaagccacaCagtgtcattacctctgcagc	8	13	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26775077	G	G	26775077	1	3	121	0	1	0	0	0	0	0	0	0	7991	493	17	4		4	ITPR2	12	26775077	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	203072	26775077	107076818	326	112936											
PPFIBP1	8496	broad.mit.edu	37	chr12	27835625	27835625	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatggtcgaatgctacatTacatgactgttgtaagtgac	10	6	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27835625	G	G	27835625	3	3	121	1	0	0	0	0	1	0	0	0	12409	1754	61	5	2364	5	PPFIBP1	12	27835625	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	1060548	27835625	106016270	327	112937											
CAPRIN2	65981	broad.mit.edu	37	chr12	30888023	30888023	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagtctttttgtacgtgctCctgtgtcaagttctgcaata	9	8	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30888023	A	A	30888023	4	1	121	1	0	0	0	0	0	1	0	0	2662	864	30	3	2755	3	CAPRIN2	12	30888023	Nonsense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3052398	30888023	102963872	328	112938											
SYT10	341359	broad.mit.edu	37	chr12	33529881	33529881	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgatctagtacagaaataGaacacagtggttagttgttg	10	4	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33529881	T	T	33529881	1	4	121	0	1	0	0	0	0	0	0	0	15585	957	33	3		3	SYT10	12	33529881	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2641858	33529881	100322014	329	112939											
KRT7	3855	broad.mit.edu	37	chr12	52642150	52642150	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccctggagcacatactGccaggctcaatggcctggga	13	13	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52642150	C	C	52642150	1	2	121	0	1	0	0	0	0	0	0	0	8554	1334	46	4		4	KRT7	12	52642150	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	19112269	52642150	81209745	330	112940											
ITGA5	3678	broad.mit.edu	37	chr12	54803130	54803130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccagctgtacagtggagCgcatgcctgggagggcccag	17	12	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54803130	A	A	54803130	3	1	121	1	0	0	0	0	1	0	0	0	7949	768	27	3	2788	3	ITGA5	12	54803130	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	2160980	54803130	79048765	331	112941											
MARS	4141	broad.mit.edu	37	chr12	57905977	57905977	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtcttccttgggcctttGaaggaggtctcaggaaatct	12	9	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57905977	A	A	57905977	1	1	121	0	1	0	0	0	0	0	0	0	9408	1305	45	4		4	MARS	12	57905977	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	3102847	57905977	75945918	332	112942											
IL26	55801	broad.mit.edu	37	chr12	68595652	68595652	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctttccaataattttttAatccaggaaagaagaatatc	5	7	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68595652	T	T	68595652	2	4	121	1	0	0	0	0	0	0	0	1	7749	358	13	5		5	IL26	12	68595652	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	10689675	68595652	65256243	333	112943											
E2F7	144455	broad.mit.edu	37	chr12	77419607	77419607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtagaagaaaccgggcCcggcattgcaggagaataga	14	7	0	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77419607	A	A	77419607	3	1	121	1	0	0	0	0	1	0	0	0	4912	623	22	2	447	2	E2F7	12	77419607	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	8823955	77419607	56432288	334	112944											
E2F7	144455	broad.mit.edu	37	chr12	77427701	77427701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggatcctctcagaagcCtgaactgtgttaaaagaacc	8	11	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77427701	A	A	77427701	3	1	121	1	0	0	0	0	1	0	0	0	4912	680	24	2	1514	2	E2F7	12	77427701	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	8094	77427701	56424194	335	112945											
ALX1	8092	broad.mit.edu	37	chr12	85677280	85677280	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgatactctcaattacttCtacttattgatttaattgag	4	7	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85677280	A	A	85677280	1	1	121	0	1	0	0	0	0	0	0	0	556	928	32	3		3	ALX1	12	85677280	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	8249579	85677280	48174615	336	112946											
WSCD2	9671	broad.mit.edu	37	chr12	108603977	108603977	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcgacgaacgtgagcgagGcagagtgcgacatggagtgc	18	8	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108603977	C	C	108603977	3	2	121	1	0	0	0	0	1	0	0	0	17534	1203	42	4	587	4	WSCD2	12	108603977	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	22926697	108603977	25247918	337	112947											
CCDC63	160762	broad.mit.edu	37	chr12	111311505	111311505	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaacattgcagtttttgtCtgagcacacttcagttagtg	9	7	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111311505	T	T	111311505	1	4	121	0	1	0	0	0	0	0	0	0	2862	928	32	4		4	CCDC63	12	111311505	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2707528	111311505	22540390	338	112948											
ACAD10	80724	broad.mit.edu	37	chr12	112171664	112171664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagggcaaacagaccacGcagaatccaccctagccggc	9	15	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112171664	T	T	112171664	1	4	121	0	1	0	0	0	0	0	0	0	108	1102	38	3		3	ACAD10	12	112171664	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	860159	112171664	21680231	339	112949											
NOS1	4842	broad.mit.edu	37	chr12	117715775	117715775	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctcttacttggggtgcctGatgggaacttccaacaccag	10	13	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117715775	A	A	117715775	2	1	121	1	0	0	0	0	0	0	0	1	10636	1280	45	4		4	NOS1	12	117715775	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	5544111	117715775	16136120	340	112950											
MLEC	9761	broad.mit.edu	37	chr12	121125332	121125332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggaaggccgggtgggccGaggtgagagtccccctgccg	18	11	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121125332	T	T	121125332	3	4	121	1	0	0	0	0	1	0	0	0	9706	1058	37	3	235	3	MLEC	12	121125332	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	3409557	121125332	12726563	341	112951											
KDM2B	84678	broad.mit.edu	37	chr12	122013805	122013805	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaacaagttggttaagtcacGaaggagcaaatgaaccggga	12	6	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122013805	A	A	122013805	1	1	121	0	1	0	0	0	0	0	0	0	8195	1073	37	4		4	KDM2B	12	122013805	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	888473	122013805	11838090	342	112952											
NCOR2	9612	broad.mit.edu	37	chr12	124812058	124812059	+	Missense_Mutation	DNP	GA	AG	AG													gggttaaaagcattggcgctGagcggcggggactcttccca							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	124812059	AG	AG	124812058	3	1	121	1	0	0	0	0	1	0	0	0	10331	1277	45	4	476	4	NCOR2	12	124812058	Missense_Mutation	DNP	GA	TCGA-44-6144-01A-11D-1753-08	2798253	124812058	9039837	343	112953											
POLE	5426	broad.mit.edu	37	chr12	133218752	133218752	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcatgggcctcgtcctccCgcccacttacctgtggagta	9	16	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133218752	G	G	133218752	1	3	121	0	1	0	0	0	0	0	0	0	12291	667	23	4		4	POLE	12	133218752	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	8406694	133218752	633143	344	112954											
IFT88	8100	broad.mit.edu	37	chr13	21205030	21205030	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatctgttttcttgaacatCttaatccaccccttttgtgc	4	11	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21205030	G	G	21205030	1	3	121	0	1	0	0	0	0	0	0	0	7636	928	32	4		4	IFT88	13	21205030	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08		21205030	93964848	345	112955											
ATP12A	479	broad.mit.edu	37	chr13	25264846	25264846	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatctgcttctattccacAacgtgtctggaaggtaaaag	8	9	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25264846	C	C	25264846	2	2	121	1	0	0	0	0	0	0	0	1	1126	117	5	5		5	ATP12A	13	25264846	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	4059816	25264846	89905032	346	112956											
RNF17	56163	broad.mit.edu	37	chr13	25353824	25353824	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacactaatactgcagaagAaattgatgaagcattgaata	9	5	0	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25353824	G	G	25353824	3	3	121	1	0	0	0	0	1	0	0	0	13572	246	9	5	467	5	RNF17	13	25353824	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	88978	25353824	89816054	347	112957											
POLR1D	51082	broad.mit.edu	37	chr13	28239978	28239978	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagaaaacccgaagaaacAcagaagccatccttacaagc	7	11	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28239978	T	T	28239978	3	4	121	1	0	0	0	0	1	0	0	0	12307	159	6	5	647	5	POLR1D	13	28239978	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	2886154	28239978	86929900	348	112958											
FLT3	2322	broad.mit.edu	37	chr13	28623361	28623361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttaacgggaaaaggaagaGggtgggcagattatctttgc	15	4	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28623361	T	T	28623361	1	4	121	0	1	0	0	0	0	0	0	0	6000	1015	35	2		2	FLT3	13	28623361	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	383383	28623361	86546517	349	112959											
C13orf33	84935	broad.mit.edu	37	chr13	31498601	31498601	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattgtagcagttgctccCgcactccaggcctgtgctag	10	13	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31498601	A	A	31498601	1	1	121	0	1	0	0	0	0	0	0	0	1740	667	23	1		1	C13orf33	13	31498601	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	2875240	31498601	83671277	350	112960											
TRPC4	7223	broad.mit.edu	37	chr13	38266263	38266263	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcaaataggaggctgtGtggcagataaacttgataaa	11	4	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38266263	C	C	38266263	3	2	121	1	0	0	0	0	1	0	0	0	16705	1368	48	4	1873	4	TRPC4	13	38266263	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	6767662	38266263	76903615	351	112961											
EPSTI1	94240	broad.mit.edu	37	chr13	43528100	43528100	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactattgctgatgctctcTaaatgcttctcttctaaggt	6	9	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43528100	C	C	43528100	3	2	121	1	0	0	0	0	1	0	0	0	5240	1530	53	5	717	5	EPSTI1	13	43528100	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	5261837	43528100	71641778	352	112962											
NEK3	4752	broad.mit.edu	37	chr13	52728041	52728041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctcttaccatgtcttcagGaaataactttcctttctgct	4	11	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52728041	T	T	52728041	3	4	121	1	0	0	0	0	1	0	0	0	10420	1174	41	3	1274	3	NEK3	13	52728041	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	9199941	52728041	62441837	353	112963											
KLHL1	57626	broad.mit.edu	37	chr13	70681367	70681367	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcacctgttgcctggctAgagttgtctggctccacttt	9	13	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70681367	G	G	70681367	2	3	121	1	0	0	0	0	0	0	0	1	8436	407	15	5		5	KLHL1	13	70681367	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	17953326	70681367	44488511	354	112964											
MYCBP2	23077	broad.mit.edu	37	chr13	77718792	77718792	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catttaatttgtttgcatacCtcctggcaatcctaccaccc	4	14	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77718792	G	G	77718792	1	3	121	0	1	0	0	0	0	0	0	0	10112	696	24	4		4	MYCBP2	13	77718792	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	7037425	77718792	37451086	355	112965											
SLITRK6	84189	broad.mit.edu	37	chr13	86369930	86369930	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcaccaattatagactgTggaggcatgttctccaacca	7	11	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86369930	C	C	86369930	2	2	121	1	0	0	0	0	0	0	0	1	14861	1683	59	5		5	SLITRK6	13	86369930	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	8651138	86369930	28799948	356	112966											
HS6ST3	266722	broad.mit.edu	37	chr13	97485263	97485263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacatgcagctttacgaGtatgcaaaagatctcttcca	8	10	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97485263	T	T	97485263	3	4	121	1	0	0	0	0	1	0	0	0	7439	1020	36	3	1233	3	HS6ST3	13	97485263	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	11115333	97485263	17684615	357	112967											
ERCC5	2073	broad.mit.edu	37	chr13	103510579	103510579	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgttgaatagaactaaGtgtatgaaatgtaaatttca	7	2	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103510579	A	A	103510579	1	1	121	0	1	0	0	0	0	0	0	0	5258	1044	36	4		4	ERCC5	13	103510579	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	6025316	103510579	11659299	358	112968											
COL4A1	1282	broad.mit.edu	37	chr13	110866264	110866264	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacccccaatcccacagcCgtgcttaccttttgtcctgg	6	19	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110866264	A	A	110866264	1	1	121	0	1	0	0	0	0	0	0	0	3721	667	23	1		1	COL4A1	13	110866264	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	7355685	110866264	4303614	359	112969											
RABGGTA	5875	broad.mit.edu	37	chr14	24738690	24738690	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgagcatccctgacccTggttacctttgagcagcaca	8	15	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24738690	A	A	24738690	1	1	121	0	1	0	0	0	0	0	0	0	13075	1595	55	5		5	RABGGTA	14	24738690	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08		24738690	82610850	360	112970											
SCFD1	23256	broad.mit.edu	37	chr14	31169464	31169464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagcaagcaccttctgaGgtatgtcctttattcagtta	7	10	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31169464	T	T	31169464	3	4	121	1	0	0	0	0	1	0	0	0	14001	1014	35	2	1472	2	SCFD1	14	31169464	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	6430774	31169464	76180076	361	112971											
HECTD1	25831	broad.mit.edu	37	chr14	31637595	31637595	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccatttccggatctccttTgggctcattacattcttctt	6	12	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31637595	C	C	31637595	3	2	121	1	0	0	0	0	1	0	0	0	7106	1821	63	5	6437	5	HECTD1	14	31637595	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	468131	31637595	75711945	362	112972											
HECTD1	25831	broad.mit.edu	37	chr14	31637636	31637636	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctttgtttgtatctttcTttttcttatcatctccttta	2	9	6	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31637636	C	C	31637636	3	2	121	1	0	0	0	0	1	0	0	0	7106	1609	56	5	6478	5	HECTD1	14	31637636	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	41	31637636	75711904	363	112973											
EGLN3	112399	broad.mit.edu	37	chr14	34400481	34400481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagacaatcttctcctccCactggtgagcagataagtaa	8	11	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34400481	A	A	34400481	1	1	121	0	1	0	0	0	0	0	0	0	5010	609	21	2		2	EGLN3	14	34400481	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2762845	34400481	72949059	364	112974											
FANCM	57697	broad.mit.edu	37	chr14	45606513	45606513	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaattttggcgaatagttActagtgatggaagttattga	12	2	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45606513	G	G	45606513	1	3	121	0	1	0	0	0	0	0	0	0	5728	406	14	5		5	FANCM	14	45606513	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	11206032	45606513	61743027	365	112975											
BMP4	652	broad.mit.edu	37	chr14	54416867	54416867	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgggcacacaacaggcTttggggatactggaattgac	13	8	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54416867	A	A	54416867	3	1	121	1	0	0	0	0	1	0	0	0	1468	1606	56	5	120	5	BMP4	14	54416867	Missense_Mutation	SNP	T	TCGA-44-6144-01A-11D-1753-08	8810354	54416867	52932673	366	112976											
SAMD4A	23034	broad.mit.edu	37	chr14	55237029	55237029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcaggaatatggcagGgcaccattccttgttcacga	13	10	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55237029	T	T	55237029	1	4	121	0	1	0	0	0	0	0	0	0	13932	1247	43	2		2	SAMD4A	14	55237029	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	820162	55237029	52112511	367	112977											
WDHD1	11169	broad.mit.edu	37	chr14	55455817	55455817	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatctgctattgtataattCaaagtgtttgataagtgtgt	9	3	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55455817	A	A	55455817	3	1	121	1	0	0	0	0	1	0	0	0	17398	825	29	3	1990	3	WDHD1	14	55455817	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	218788	55455817	51893723	368	112978											
FAM71D	161142	broad.mit.edu	37	chr14	67675140	67675140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgcctgattttcagagCacagctctcaaggctgaaga	10	9	2	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67675140	A	A	67675140	3	1	121	1	0	0	0	0	1	0	0	0	5661	709	25	3	1148	3	FAM71D	14	67675140	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	12219323	67675140	39674400	369	112979											
RAD51L1	5890	broad.mit.edu	37	chr14	68878251	68878251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagagaagacaggtgggtGctttgacagtattctctgac	13	7	1	5			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68878251	T	T	68878251	1	4	121	0	1	0	0	0	0	0	0	0	13097	1334	46	3		3	RAD51L1	14	68878251	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1203111	68878251	38471289	370	112980											
LTBP2	4053	broad.mit.edu	37	chr14	74976011	74976011	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaggagaaggagccagcCgtgttggtgcagactccgga	16	9	0	2	rs61729544	byFrequency	TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74976011	A	A	74976011	2	1	121	1	0	0	0	0	0	0	0	1	9161	639	23	1		1	LTBP2	14	74976011	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	6097760	74976011	32373529	371	112981											
KIAA0317	9870	broad.mit.edu	37	chr14	75143362	75143362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggattatcatactcatctCggggtactatttgaagggtg	12	6	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75143362	A	A	75143362	3	1	121	1	0	0	0	0	1	0	0	0	8237	884	31	3	1956	3	KIAA0317	14	75143362	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	167351	75143362	32206178	372	112982											
NRXN3	9369	broad.mit.edu	37	chr14	79176063	79176063	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcttctcagtttgttttttGgctttatgtttcttaatttt	6	5	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79176063	C	C	79176063	1	2	121	0	1	0	0	0	0	0	0	0	10762	1363	47	4		4	NRXN3	14	79176063	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	4032701	79176063	28173477	373	112983											
C14orf143	90141	broad.mit.edu	37	chr14	90416529	90416529	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacatgtaattttatcacGttttcacagtgcaagttctt	6	7	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90416529	A	A	90416529	1	1	121	0	1	0	0	0	0	0	0	0	1761	1160	40	4		4	C14orf143	14	90416529	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	11240466	90416529	16933011	374	112984											
TTC7B	145567	broad.mit.edu	37	chr14	91161817	91161817	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacaagtgccctgctggcCtcaatcaagtcactgttcac	9	13	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91161817	T	T	91161817	1	4	121	0	1	0	0	0	0	0	0	0	16839	696	24	4		4	TTC7B	14	91161817	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	745288	91161817	16187723	375	112985											
C14orf159	80017	broad.mit.edu	37	chr14	91655537	91655537	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagtgagatgggcttggTccatttccccaaacgggctt	12	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91655537	G	G	91655537	1	3	121	0	1	0	0	0	0	0	0	0	1768	1682	58	5		5	C14orf159	14	91655537	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	493720	91655537	15694003	376	112986											
BDKRB1	623	broad.mit.edu	37	chr14	96730467	96730467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccagccggaggcagcagCggcggaggcaggcccgggtc	20	13	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96730467	A	A	96730467	2	1	121	1	0	0	0	0	0	0	0	1	1397	759	27	3		3	BDKRB1	14	96730467	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	5074930	96730467	10619073	377	112987											
C15orf2	23742	broad.mit.edu	37	chr15	24924390	24924390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacagtgcatcctgcagCacacatggacagagagaaaa	9	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24924390	A	A	24924390	3	1	121	1	0	0	0	0	1	0	0	0	1797	710	25	3	3378	3	C15orf2	15	24924390	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08		24924390	77607002	378	112988											
UBE3A	7337	broad.mit.edu	37	chr15	25615807	25615807	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactaagctgtagagaacaGtgattcttcgttcactgtac	9	8	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25615807	A	A	25615807	3	1	121	1	0	0	0	0	1	0	0	0	17005	1029	36	4	1136	4	UBE3A	15	25615807	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	691417	25615807	76915585	379	112989											
C15orf41	84529	broad.mit.edu	37	chr15	36983241	36983241	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgaggcatattttgggtgGaaaacttgtgtgtgtgtgtc	15	3	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36983241	T	T	36983241	1	4	121	0	1	0	0	0	0	0	0	0	1808	1189	41	3		3	C15orf41	15	36983241	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	11367434	36983241	65548151	380	112990											
PLA2G4E	123745	broad.mit.edu	37	chr15	42293323	42293323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcagctcccccttgtcCcccagtaggcagaaaaggca	11	14	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42293323	T	T	42293323	1	4	121	0	1	0	0	0	0	0	0	0	12100	638	22	4		4	PLA2G4E	15	42293323	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	5310082	42293323	60238069	381	112991											
SLC12A1	6557	broad.mit.edu	37	chr15	48512830	48512830	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgctatctataaaatgcaGaatgtggcagtcaccccaag	8	9	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48512830	C	C	48512830	5	2	121	1	0	0	0	0	0	0	1	0	14495	956	33	4	426	4	SLC12A1	15	48512830	Splice_Site	SNP	G	TCGA-44-6144-01A-11D-1753-08	6219507	48512830	54018562	382	112992											
FBN1	2200	broad.mit.edu	37	chr15	48703402	48703402	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgattttaaagaagccatCttcatttccagattcgatca	6	8	3	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48703402	T	T	48703402	3	4	121	1	0	0	0	0	1	0	0	0	5759	913	32	4	218	4	FBN1	15	48703402	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	190572	48703402	53827990	383	112993											
FBN1	2200	broad.mit.edu	37	chr15	48800778	48800778	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagggttttatagcacgaaCctttgcaataacgtccatct	7	10	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48800778	A	A	48800778	5	1	121	1	0	0	0	0	0	0	1	0	5759	521	18	3	6985	3	FBN1	15	48800778	Splice_Site	SNP	C	TCGA-44-6144-01A-11D-1753-08	97376	48800778	53730614	384	112994											
LEO1	123169	broad.mit.edu	37	chr15	52246769	52246769	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccatcttatagtattttCtacctgtttcacaacacaag	3	12	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52246769	G	G	52246769	3	3	121	1	0	0	0	0	1	0	0	0	8798	922	32	4	775	4	LEO1	15	52246769	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3445991	52246769	50284623	385	112995											
FAH	2184	broad.mit.edu	37	chr15	80454732	80454732	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtctttcttttcatttccAgcagcatatttgtctcagga	6	9	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80454732	G	G	80454732	1	3	121	0	1	0	0	0	0	0	0	0	5417	203	7	5		5	FAH	15	80454732	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	28207963	80454732	22076660	386	112996											
NTRK3	4916	broad.mit.edu	37	chr15	88420120	88420120	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagggagatgtgaggcagGgagagaggaggcaacagagt	21	3	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88420120	A	A	88420120	1	1	121	0	1	0	0	0	0	0	0	0	10803	1247	43	4		4	NTRK3	15	88420120	3'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	7965388	88420120	14111272	387	112997											
NTRK3	4916	broad.mit.edu	37	chr15	88679111	88679111	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcacacacagccatccccCacaataacatgcacttacag	3	18	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88679111	T	T	88679111	1	4	121	0	1	0	0	0	0	0	0	0	10803	609	21	4		4	NTRK3	15	88679111	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	258991	88679111	13852281	388	112998											
UNC45A	55898	broad.mit.edu	37	chr15	91485905	91485905	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatggggctgagccagccagGccagttttttggggaccaga	16	9	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91485905	C	C	91485905	1	2	121	0	1	0	0	0	0	0	0	0	17114	1218	42	4		4	UNC45A	15	91485905	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2806794	91485905	11045487	389	112999											
RCCD1	91433	broad.mit.edu	37	chr15	91503341	91503341	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagatggagcatgtgagccCcttatgggagggagcattgg	16	7	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91503341	T	T	91503341	1	4	121	0	1	0	0	0	0	0	0	0	13283	638	22	4		4	RCCD1	15	91503341	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	17436	91503341	11028051	390	113000											
SPATA8	145946	broad.mit.edu	37	chr15	97327389	97327389	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctcttctgcagaacctcGtcgcgacatttctcagaagc	8	13	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97327389	A	A	97327389	2	1	121	1	0	0	0	0	0	0	0	1	15131	1132	40	4		4	SPATA8	15	97327389	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	5824048	97327389	5204003	391	113001											
ASB7	140460	broad.mit.edu	37	chr15	101170058	101170058	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcagacacaaacttgggtCgcttagaagacggacagact	13	9	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101170058	T	T	101170058	3	4	121	1	0	0	0	0	1	0	0	0	1032	884	31	4	634	4	ASB7	15	101170058	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	3842669	101170058	1361334	392	113002											
WDR90	197335	broad.mit.edu	37	chr16	700343	700343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttcccttggtcctggaGgccaggacacctcagagagg	13	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	700343	T	T	700343	3	4	121	1	0	0	0	0	1	0	0	0	17464	991	35	2	383	2	WDR90	16	700343	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08		700343	89654410	393	113003											
ABCA3	21	broad.mit.edu	37	chr16	2338148	2338148	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgacggttctgccgtactcGcccaaggtcagcctcagcat	10	15	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2338148	A	A	2338148	2	1	121	1	0	0	0	0	0	0	0	1	33	1074	38	4		4	ABCA3	16	2338148	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	1637805	2338148	88016605	394	113004											
MEFV	4210	broad.mit.edu	37	chr16	3304362	3304362	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctaggtcgcatctttcCcgagggcaggtacacttcga	11	12	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3304362	T	T	3304362	3	4	121	1	0	0	0	0	1	0	0	0	9552	632	22	4	1675	4	MEFV	16	3304362	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	966214	3304362	87050391	395	113005											
ZNF500	26048	broad.mit.edu	37	chr16	4810689	4810689	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaccgccactgcccctcgaGgctggcgccaagcctggtgg	14	17	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4810689	C	C	4810689	1	2	121	0	1	0	0	0	0	0	0	0	18075	1015	35	4		4	ZNF500	16	4810689	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1506327	4810689	85544064	396	113006											
PRKCB	5579	broad.mit.edu	37	chr16	24046816	24046816	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggaccacacggagcgccgCggccgcatctacatccaggc	12	17	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24046816	T	T	24046816	2	4	121	1	0	0	0	0	0	0	0	1	12614	755	27	4		4	PRKCB	16	24046816	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	19236127	24046816	66307937	397	113007											
HS3ST4	9951	broad.mit.edu	37	chr16	26147509	26147509	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctacaaacccttcaacttGatgttttaccaaatgactgg	5	10	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26147509	T	T	26147509	3	4	121	1	0	0	0	0	1	0	0	0	7434	1281	45	3	1317	3	HS3ST4	16	26147509	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2100693	26147509	64207244	398	113008											
IL21R	50615	broad.mit.edu	37	chr16	27460086	27460086	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcagcttacagtgaggagAgggatcggccatacggcctg	15	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27460086	T	T	27460086	3	4	121	1	0	0	0	0	1	0	0	0	7741	295	11	5	1129	5	IL21R	16	27460086	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	1312577	27460086	62894667	399	113009											
KIAA0556	23247	broad.mit.edu	37	chr16	27783033	27783033	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggcagcgcctgggccgCaactgcccagccagggtttc	14	16	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27783033	G	G	27783033	1	3	121	0	1	0	0	0	0	0	0	0	8253	725	25	4		4	KIAA0556	16	27783033	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	322947	27783033	62571720	400	113010											
SH2B1	25970	broad.mit.edu	37	chr16	28884500	28884500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccccccaggccgggagcAggctgggagccatgcggggg	18	15	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28884500	T	T	28884500	1	4	121	0	1	0	0	0	0	0	0	0	14340	188	7	5		5	SH2B1	16	28884500	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	1101467	28884500	61470253	401	113011											
CD19	930	broad.mit.edu	37	chr16	28943816	28943816	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccacatgaggcccctggccAtctggcttttcatcttcaac	7	15	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28943816	T	T	28943816	3	4	121	1	0	0	0	0	1	0	0	0	3003	217	8	5	244	5	CD19	16	28943816	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	59316	28943816	61410937	402	113012											
SEZ6L2	26470	broad.mit.edu	37	chr16	29906600	29906600	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatagtggatcctgaagCcaccgccccttgggacccgt	11	15	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29906600	T	T	29906600	3	4	121	1	0	0	0	0	1	0	0	0	14257	739	26	4	1994	4	SEZ6L2	16	29906600	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	962784	29906600	60448153	403	113013											
ABCC12	94160	broad.mit.edu	37	chr16	48130791	48130791	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgcaaaccacctgagagCacagttaaagtagaggaggt	12	9	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48130791	T	T	48130791	3	4	121	1	0	0	0	0	1	0	0	0	52	710	25	4	1050	4	ABCC12	16	48130791	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	18224191	48130791	42223962	404	113014											
DHODH	1723	broad.mit.edu	37	chr16	72040242	72040242	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttattattttcaaacactAcaatgccaacattgtcagtt	3	9	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72040242	T	T	72040242	1	4	121	0	1	0	0	0	0	0	0	0	4524	406	14	5		5	DHODH	16	72040242	5'Flank	SNP	A	TCGA-44-6144-01A-11D-1753-08	23909451	72040242	18314511	405	113015											
GLG1	2734	broad.mit.edu	37	chr16	74525010	74525010	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaatggtgttcaatctcCccccgacagcttaggatgat	9	11	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74525010	A	A	74525010	2	1	121	1	0	0	0	0	0	0	0	1	6500	610	22	2		2	GLG1	16	74525010	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	2484768	74525010	15829743	406	113016											
VAT1L	57687	broad.mit.edu	37	chr16	77918564	77918564	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggagaacaaagtcatcgcGgggttttcccttttaaatct	10	8	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77918564	C	C	77918564	2	2	121	1	0	0	0	0	0	0	0	1	17257	1103	39	4		4	VAT1L	16	77918564	Silent	SNP	G	TCGA-44-6144-01A-11D-1753-08	3393554	77918564	12436189	407	113017											
IRF8	3394	broad.mit.edu	37	chr16	85951881	85951881	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattacttctacaagcagtAcatggatttccccagaatat	5	10	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85951881	G	G	85951881	1	3	121	0	1	0	0	0	0	0	0	0	7906	406	14	5		5	IRF8	16	85951881	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	8033317	85951881	4402872	408	113018											
ZNF276	92822	broad.mit.edu	37	chr16	89800163	89800164	+	Intron	INS	-	G	G													tttcacttgagacaccccccINSggggggtctagaagtttctt					rs147083892	by1000genomes	TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89800164	G	G	89800163	6	5	121	0	1	1	1	0	0	0	0	0	17937	667	23	0		0	ZNF276	16	89800163	Intron	INS	-	TCGA-44-6144-01A-11D-1753-08	3848282	89800163	554590	409	113019											
OR1A2	26189	broad.mit.edu	37	chr17	3101509	3101509	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttccatctaccaagagtCtattcaaagccttctgcacc	5	13	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3101509	T	T	3101509	2	4	121	1	0	0	0	0	0	0	0	1	11044	912	32	4		4	OR1A2	17	3101509	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08		3101509	78093701	410	113020											
TP53	7157	broad.mit.edu	37	chr17	7574017	7574017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctcggaacatctcgaagCgctcacgcccacggatctgc	10	16	4	0	rs121912664		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7574017	A	A	7574017	3	1	121	1	0	0	0	0	1	0	0	0	16505	768	27	3	179	3	TP53	17	7574017	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	4472508	7574017	73621193	411	113021											
PER1	5187	broad.mit.edu	37	chr17	8051855	8051855	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttacaatagcttttcttGttccaaaattcaaagggtgt	6	7	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8051855	A	A	8051855	1	1	121	0	1	0	0	0	0	0	0	0	11823	1392	48	4		4	PER1	17	8051855	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	477838	8051855	73143355	412	113022											
NTN1	9423	broad.mit.edu	37	chr17	9086271	9086271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacgactgcagccagcagcGtggaggagcctgaaggtaaa	15	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9086271	T	T	9086271	3	4	121	1	0	0	0	0	1	0	0	0	10795	1145	40	3	1410	3	NTN1	17	9086271	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	1034416	9086271	72108939	413	113023											
GAS7	8522	broad.mit.edu	37	chr17	9829013	9829013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttggagtcctttcgccCcttgtttgtgtggatgatgc	11	11	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9829013	A	A	9829013	1	1	121	0	1	0	0	0	0	0	0	0	6312	638	22	2		2	GAS7	17	9829013	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	742742	9829013	71366197	414	113024											
MYH8	4626	broad.mit.edu	37	chr17	10318357	10318357	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaacaggcttcatgcacaGcaagggtggcaaaatatccc	9	10	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10318357	A	A	10318357	1	1	121	0	1	0	0	0	0	0	0	0	10135	986	34	4		4	MYH8	17	10318357	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	489344	10318357	70876853	415	113025											
DNAH9	1770	broad.mit.edu	37	chr17	11604289	11604289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggattacgtaaacagcaCatctctctgcaccttctggc	7	15	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11604289	A	A	11604289	1	1	121	0	1	0	0	0	0	0	0	0	4648	493	17	3		3	DNAH9	17	11604289	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	1285932	11604289	69590921	416	113026											
DNAH9	1770	broad.mit.edu	37	chr17	11806036	11806036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctctgaaatttcccagGtactttcatcaatggaagaa	7	8	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11806036	T	T	11806036	3	4	121	1	0	0	0	0	1	0	0	0	4648	1275	44	3	11645	3	DNAH9	17	11806036	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	201747	11806036	69389174	417	113027											
NF1	4763	broad.mit.edu	37	chr17	29546053	29546053	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacaggggcccgaaacccaaGgcagtacagcagaattaatt	10	10	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29546053	C	C	29546053	3	2	121	1	0	0	0	0	1	0	0	0	10451	1000	35	4	1612	4	NF1	17	29546053	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	17740017	29546053	51649157	418	113028											
ACLY	47	broad.mit.edu	37	chr17	40040561	40040561	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtatcaggatacaggatCaggaggaggcctggggaagt	18	5	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40040561	A	A	40040561	1	1	121	0	1	0	0	0	0	0	0	0	143	841	29	3		3	ACLY	17	40040561	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	10494508	40040561	41154649	419	113029											
HOXB9	3219	broad.mit.edu	37	chr17	46703471	46703471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgaacaccggcgctttgGgctggaagctgcacgagggg	17	12	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46703471	T	T	46703471	3	4	121	1	0	0	0	0	1	0	0	0	7375	1232	43	2	599	2	HOXB9	17	46703471	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	6662910	46703471	34491739	420	113030											
IGF2BP1	10642	broad.mit.edu	37	chr17	47121254	47121254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccttcctccttgaggatGcaaggcaggggagtggaggg	16	9	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47121254	T	T	47121254	1	4	121	0	1	0	0	0	0	0	0	0	7643	1334	46	3		3	IGF2BP1	17	47121254	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	417783	47121254	34073956	421	113031											
MRPS23	51649	broad.mit.edu	37	chr17	55917173	55917173	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagagacctttcgactggtCtgcaggtgcctccaaatgct	10	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55917173	A	A	55917173	3	1	121	1	0	0	0	0	1	0	0	0	9928	913	32	3	32	3	MRPS23	17	55917173	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	8795919	55917173	25278037	422	113032											
TEX14	56155	broad.mit.edu	37	chr17	56698990	56698991	+	Intron	DNP	TC	AA	AA													ggtgatggagactatcccacTctgctcaaggcagtactcac							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	56698991	AA	AA	56698990	1	1	121	0	1	0	0	0	0	0	0	0	15900	1566	54	5		5	TEX14	17	56698990	Intron	DNP	TC	TCGA-44-6144-01A-11D-1753-08	781817	56698990	24496220	423	113033											
TRIM37	4591	broad.mit.edu	37	chr17	57168627	57168627	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattctgatcttactattttCaaaattcacaaataatcgta	2	8	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57168627	A	A	57168627	1	1	121	0	1	0	0	0	0	0	0	0	16635	841	29	3		3	TRIM37	17	57168627	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	469637	57168627	24026583	424	113034											
LRRC37A3	374819	broad.mit.edu	37	chr17	62850793	62850793	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aataacaatgccaaggttttGattcttgaaaggagcaatta	8	5	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62850793	A	A	62850793	1	1	121	0	1	0	0	0	0	0	0	0	9080	1305	45	4		4	LRRC37A3	17	62850793	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	5682166	62850793	18344417	425	113035											
CCDC46	201134	broad.mit.edu	37	chr17	64092444	64092444	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaggctgaatttcggtgtCatctgctaaatgaacaggag	11	8	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64092444	A	A	64092444	3	1	121	1	0	0	0	0	1	0	0	0	2845	826	29	3	2420	3	CCDC46	17	64092444	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	1241651	64092444	17102766	426	113036											
KCNJ2	3759	broad.mit.edu	37	chr17	68171820	68171820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtgtttgatgtggcgaGtgggcaatcttcggaaaagc	15	6	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68171820	T	T	68171820	3	4	121	1	0	0	0	0	1	0	0	0	8121	1029	36	3	642	3	KCNJ2	17	68171820	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	4079376	68171820	13023390	427	113037											
CD300C	10871	broad.mit.edu	37	chr17	72540834	72540834	+	Missense_Mutation	SNP	G	T	T													ccccacaccagtaggtgcctGcgtcctcctctgtgagattc							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72540834	T	T	72540834	3	4	121	1	0	0	0	0	1	0	0	0	3027	1319	46	3	372	3	CD300C	17	72540834	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	4369014	72540834	8654376	428	113038	493	2									
CD300C	10871	broad.mit.edu	37	chr17	72540836	72540836	+	Missense_Mutation	SNP	G	T	T													ccacaccagtaggtgcctgcGtcctcctctgtgagattctc							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72540836	T	T	72540836	3	4	121	1	0	0	0	0	1	0	0	0	3027	1136	40	3	374	3	CD300C	17	72540836	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2	72540836	8654374	429	113039	493	2									
TIMP2	7077	broad.mit.edu	37	chr17	76851735	76851735	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcagttggccacaggggCgttggaggcctgcttatggg	17	8	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76851735	T	T	76851735	1	4	121	0	1	0	0	0	0	0	0	0	16041	783	27	4		4	TIMP2	17	76851735	3'UTR	SNP	C	TCGA-44-6144-01A-11D-1753-08	4310899	76851735	4343475	430	113040											
TIMP2	7077	broad.mit.edu	37	chr17	76853506	76853506	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcttagatcaggagccgggGattaacgggtcctggaaagc	15	8	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76853506	A	A	76853506	1	1	121	0	1	0	0	0	0	0	0	0	16041	1189	41	4		4	TIMP2	17	76853506	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1771	76853506	4341704	431	113041											
FN3KRP	79672	broad.mit.edu	37	chr17	80674840	80674840	+	Intron	DEL	G	-	-													agggtcgcgggcctcggcgcGgggcgcggcctgggcttctc					rs76609961		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80674840	-	-	80674840	6	5	121	0	1	1	0	1	0	0	0	0	6022	1131	39	0		0	FN3KRP	17	80674840	Intron	DEL	G	TCGA-44-6144-01A-11D-1753-08	3821334	80674840	520370	432	113042											
ANKRD12	23253	broad.mit.edu	37	chr18	9195482	9195482	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatgtttgaaattttccttAggggtttctatactgtattg	9	4	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9195482	T	T	9195482	1	4	121	0	1	0	0	0	0	0	0	0	640	435	15	5		5	ANKRD12	18	9195482	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08		9195482	68881766	433	113043											
APCDD1	147495	broad.mit.edu	37	chr18	10468329	10468329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcatacacgagagcacGcactgtgatgacaccttgta	9	11	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10468329	T	T	10468329	1	4	121	0	1	0	0	0	0	0	0	0	767	1102	38	3		3	APCDD1	18	10468329	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1272847	10468329	67608919	434	113044											
LAMA3	3909	broad.mit.edu	37	chr18	21531760	21531760	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtatgttgtccagtagctGattgttcatgcactaaaaca	9	7	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21531760	A	A	21531760	1	1	121	0	1	0	0	0	0	0	0	0	8679	1305	45	4		4	LAMA3	18	21531760	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	11063431	21531760	56545488	435	113045											
SETBP1	26040	broad.mit.edu	37	chr18	42531409	42531409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagagaccagccctgggGcagcagccattgaaagcaaa	11	14	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42531409	T	T	42531409	3	4	121	1	0	0	0	0	1	0	0	0	14242	1203	42	3	2307	3	SETBP1	18	42531409	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	20999649	42531409	35545839	436	113046											
TCF4	6925	broad.mit.edu	37	chr18	52943027	52943027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttctgaggcattcagcCttgccttatagaatagggtt	10	8	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52943027	A	A	52943027	1	1	121	0	1	0	0	0	0	0	0	0	15817	696	24	2		2	TCF4	18	52943027	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	10411618	52943027	25134221	437	113047											
KIAA1468	57614	broad.mit.edu	37	chr18	59895930	59895930	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaccgcttttttgcagAtcaaatatattaatttttat	3	5	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59895930	G	G	59895930	1	3	121	0	1	0	0	0	0	0	0	0	8306	348	12	5		5	KIAA1468	18	59895930	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	6952903	59895930	18181318	438	113048											
FBXO15	201456	broad.mit.edu	37	chr18	71797821	71797821	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcatagacatagctatcttCtctactgaattaaatttcca	3	10	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71797821	T	T	71797821	2	4	121	1	0	0	0	0	0	0	0	1	5785	912	32	4		4	FBXO15	18	71797821	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	11901891	71797821	6279427	439	113049											
ZNF236	7776	broad.mit.edu	37	chr18	74546608	74546608	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgttgcacccattcaatgtaGaggacatatttcttcctgta	7	10	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74546608	T	T	74546608	1	4	121	0	1	0	0	0	0	0	0	0	17915	957	33	3		3	ZNF236	18	74546608	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2748787	74546608	3530640	440	113050											
CNN2	1265	broad.mit.edu	37	chr19	1036328	1036328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcattgggggacagcgGcatggagccctgtggtccct	16	11	0	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1036328	T	T	1036328	1	4	121	0	1	0	0	0	0	0	0	0	3642	1218	42	3		3	CNN2	19	1036328	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08		1036328	58092655	441	113051											
STK11	6794	broad.mit.edu	37	chr19	1218447	1218447	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgaggaggttacggcacAaaaatgtcatccagctggtg	12	8	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1218447	T	T	1218447	4	4	121	1	0	0	0	0	0	1	0	0	15405	131	5	5	328	5	STK11	19	1218447	Nonsense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	182119	1218447	57910536	442	113052											
ACER1	125981	broad.mit.edu	37	chr19	6312483	6312483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagcatcatcagtggccCgaagatgaagaaggggatat	14	7	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6312483	A	A	6312483	3	1	121	1	0	0	0	0	1	0	0	0	138	652	23	1	693	1	ACER1	19	6312483	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	5094036	6312483	52816500	443	113053											
MUC16	94025	broad.mit.edu	37	chr19	8993385	8993385	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgctcaccattgacatagaGactgtccctgtccagtgtgt	9	13	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8993385	A	A	8993385	3	1	121	1	0	0	0	0	1	0	0	0	10067	942	33	4	1895	4	MUC16	19	8993385	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2680902	8993385	50135598	444	113054											
MUC16	94025	broad.mit.edu	37	chr19	8997330	8997330	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagaggaggtgggtgagatCttcttccatgccctgtcatg	14	8	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8997330	A	A	8997330	1	1	121	0	1	0	0	0	0	0	0	0	10067	928	32	3		3	MUC16	19	8997330	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	3945	8997330	50131653	445	113055											
OR7G2	390882	broad.mit.edu	37	chr19	9214004	9214004	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgagaacatgacagaaaCgcaaaatcttgctcccctcc	6	14	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9214004	T	T	9214004	1	4	121	0	1	0	0	0	0	0	0	0	11317	551	19	4		4	OR7G2	19	9214004	5'Flank	SNP	C	TCGA-44-6144-01A-11D-1753-08	216674	9214004	49914979	446	113056											
RFX1	5989	broad.mit.edu	37	chr19	14083892	14083892	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtagtagctggtgcttgccGtctgcgtgtacagcggcgtc	15	11	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14083892	A	A	14083892	3	1	121	1	0	0	0	0	1	0	0	0	13370	1145	40	4	2014	4	RFX1	19	14083892	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	4869888	14083892	45045091	447	113057											
EPS15L1	58513	broad.mit.edu	37	chr19	16513280	16513280	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcggctttcatgcagctggGaaagtttgctccttgcctgt	13	10	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16513280	A	A	16513280	3	1	121	1	0	0	0	0	1	0	0	0	5235	1174	41	4	983	4	EPS15L1	19	16513280	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2429388	16513280	42615703	448	113058											
C19orf62	29086	broad.mit.edu	37	chr19	17385023	17385023	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctggcagagatgtccccatGaagggggctgtctccttctg	13	12	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17385023	T	T	17385023	1	4	121	0	1	0	0	0	0	0	0	0	1963	1305	45	3		3	C19orf62	19	17385023	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	871743	17385023	41743960	449	113059											
ZNF682	91120	broad.mit.edu	37	chr19	20133959	20133959	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgggattctccaattaCcaacctagtgttgtgctctg	9	10	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20133959	T	T	20133959	1	4	121	0	1	0	0	0	0	0	0	0	18216	522	18	4		4	ZNF682	19	20133959	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	2748936	20133959	38995024	450	113060											
ZNF676	163223	broad.mit.edu	37	chr19	22363072	22363072	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacgtactaaagcctttgcCacattcttcacatttgtaag	6	10	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22363072	T	T	22363072	3	4	121	1	0	0	0	0	1	0	0	0	18210	594	21	4	323	4	ZNF676	19	22363072	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	2229113	22363072	36765911	451	113061											
ZNF681	148213	broad.mit.edu	37	chr19	23927132	23927132	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttatgtctagtaaggtgtGaggacttgttaaaagctttg	11	4	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23927132	A	A	23927132	3	1	121	1	0	0	0	0	1	0	0	0	18215	1294	45	4	721	4	ZNF681	19	23927132	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	1564060	23927132	35201851	452	113062											
WDR62	284403	broad.mit.edu	37	chr19	36556621	36556621	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtccgcatacagtgtctactCcatttgggtttggtgtctca	10	10	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36556621	G	G	36556621	1	3	121	0	1	0	0	0	0	0	0	0	17440	870	30	4		4	WDR62	19	36556621	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	12629489	36556621	22572362	453	113063											
SIPA1L3	23094	broad.mit.edu	37	chr19	38621437	38621437	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcctccacctttcagccaGgtggtgggtggcagctccca	14	14	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38621437	A	A	38621437	1	1	121	0	1	0	0	0	0	0	0	0	14444	1015	35	4		4	SIPA1L3	19	38621437	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2064816	38621437	20507546	454	113064											
SIPA1L3	23094	broad.mit.edu	37	chr19	38633376	38633376	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccctcaattcttttcatGttaagggatctgatgaaagc	7	10	4	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38633376	A	A	38633376	1	1	121	0	1	0	0	0	0	0	0	0	14444	1392	48	4		4	SIPA1L3	19	38633376	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	11939	38633376	20495607	455	113065											
AKT2	208	broad.mit.edu	37	chr19	40746179	40746179	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcaaaccctcagcaaaTagcagacccagacgaggatc	9	14	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40746179	C	C	40746179	1	2	121	0	1	0	0	0	0	0	0	0	480	1421	49	5		5	AKT2	19	40746179	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	2112803	40746179	18382804	456	113066											
ITPKC	80271	broad.mit.edu	37	chr19	41231331	41231331	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactacccttgggtccagctTtctggacatgctggtaagtg	11	11	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41231331	G	G	41231331	2	3	121	1	0	0	0	0	0	0	0	1	7989	1828	64	5		5	ITPKC	19	41231331	Silent	SNP	T	TCGA-44-6144-01A-11D-1753-08	485152	41231331	17897652	457	113067											
ZNF226	7769	broad.mit.edu	37	chr19	44681834	44681834	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctataaaatgattctttGtgaagactcgtgtcatttga	7	5	3	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44681834	T	T	44681834	1	4	121	0	1	0	0	0	0	0	0	0	17906	1392	48	3		3	ZNF226	19	44681834	3'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	3450503	44681834	14447149	458	113068											
CLPTM1	1209	broad.mit.edu	37	chr19	45477703	45477703	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcccaacagaacctgcAtgtgtacatctcagagcacg	8	14	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45477703	T	T	45477703	3	4	121	1	0	0	0	0	1	0	0	0	3586	217	8	5	331	5	CLPTM1	19	45477703	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	795869	45477703	13651280	459	113069											
MARK4	57787	broad.mit.edu	37	chr19	45769531	45769531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaaaatattgtacacaggGacctgaaggtaagcccccga	10	9	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45769531	A	A	45769531	3	1	121	1	0	0	0	0	1	0	0	0	9407	1174	41	4	567	4	MARK4	19	45769531	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	291828	45769531	13359452	460	113070											
CABP5	56344	broad.mit.edu	37	chr19	48547203	48547203	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggggtggagctcgcaGggcaccagtctcaagatggc	19	9	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48547203	A	A	48547203	1	1	121	0	1	0	0	0	0	0	0	0	2560	1015	35	4		4	CABP5	19	48547203	5'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	2777672	48547203	10581780	461	113071											
PLA2G4C	8605	broad.mit.edu	37	chr19	48565122	48565122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgatgggtgagttgatttGgctctctggacttcccagcc	13	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48565122	T	T	48565122	1	4	121	0	1	0	0	0	0	0	0	0	12098	1363	47	2		2	PLA2G4C	19	48565122	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	17919	48565122	10563861	462	113072											
LIG1	3978	broad.mit.edu	37	chr19	48631011	48631011	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggatgagaatgcgatGgctggagctgtggcagccat	17	7	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48631011	A	A	48631011	1	1	121	0	1	0	0	0	0	0	0	0	8853	1363	47	4		4	LIG1	19	48631011	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	65889	48631011	10497972	463	113073											
SYNGR4	23546	broad.mit.edu	37	chr19	48876782	48876782	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatccacaggtcttctcCctgatcgtcttctcctccct	6	16	4	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48876782	T	T	48876782	2	4	121	1	0	0	0	0	0	0	0	1	15570	610	22	4		4	SYNGR4	19	48876782	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	245771	48876782	10252201	464	113074											
KLK3	354	broad.mit.edu	37	chr19	51361615	51361615	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgggagcccagatgcctgGgtctgagggaggaggggaca	20	9	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51361615	C	C	51361615	1	2	121	0	1	0	0	0	0	0	0	0	8476	1247	43	4		4	KLK3	19	51361615	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2484833	51361615	7767368	465	113075											
NKG7	4818	broad.mit.edu	37	chr19	51874940	51874940	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggaagggctggaagggcGggcagatgtgggaccagact	21	6	0	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51874940	C	C	51874940	1	2	121	0	1	0	0	0	0	0	0	0	10538	1131	39	4		4	NKG7	19	51874940	3'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	513325	51874940	7254043	466	113076											
FPR2	2358	broad.mit.edu	37	chr19	52272883	52272883	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccagtctggagagggcCctgtctgaggactcagcccc	12	16	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52272883	A	A	52272883	2	1	121	1	0	0	0	0	0	0	0	1	6099	610	22	2		2	FPR2	19	52272883	Silent	SNP	C	TCGA-44-6144-01A-11D-1753-08	397943	52272883	6856100	467	113077											
ZNF534	147658	broad.mit.edu	37	chr19	52937409	52937409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctcttgtgtgtctctcGggagcccctgcattgcttga	10	11	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52937409	T	T	52937409	1	4	121	0	1	0	0	0	0	0	0	0	18100	1131	39	1		1	ZNF534	19	52937409	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	664526	52937409	6191574	468	113078											
ZNF468	90333	broad.mit.edu	37	chr19	53352410	53352410	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcctctgagcagggtccagGcatttccactcctcctgaga	10	14	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53352410	C	C	53352410	3	2	121	1	0	0	0	0	1	0	0	0	18055	1195	42	4	1504	4	ZNF468	19	53352410	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	415001	53352410	5776573	469	113079											
DPRX	503834	broad.mit.edu	37	chr19	54135178	54135178	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatattagataaaatgacaGtattgggagaaatccagggg	11	4	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54135178	T	T	54135178	1	4	121	0	1	0	0	0	0	0	0	0	4778	1044	36	3		3	DPRX	19	54135178	5'Flank	SNP	G	TCGA-44-6144-01A-11D-1753-08	782768	54135178	4993805	470	113080											
PRKCG	5582	broad.mit.edu	37	chr19	54394834	54394834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgagccgccgtgcctggCcaagcttggaactcttgatt	12	12	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54394834	A	A	54394834	1	1	121	0	1	0	0	0	0	0	0	0	12618	754	26	3		3	PRKCG	19	54394834	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	259656	54394834	4734149	471	113081											
CACNG7	59284	broad.mit.edu	37	chr19	54417828	54417828	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttggtgacggaaaacacgGagaatattctgagtgagggg	15	4	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54417828	T	T	54417828	4	4	121	1	0	0	0	0	0	1	0	0	2588	1175	41	3	277	3	CACNG7	19	54417828	Nonsense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	22994	54417828	4711155	472	113082											
LILRB3	11025	broad.mit.edu	37	chr19	54722346	54722346	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctcagtcctgctggcccCctgccctgctcccagatggg	10	19	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54722346	T	T	54722346	1	4	121	0	1	0	0	0	0	0	0	0	8864	638	22	4		4	LILRB3	19	54722346	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	304518	54722346	4406637	473	113083											
LAIR1	3903	broad.mit.edu	37	chr19	54867921	54867921	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggggcagcctggcggcCgaggactgggtggaggtcca	19	11	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54867921	T	T	54867921	1	4	121	0	1	0	0	0	0	0	0	0	8674	667	23	4		4	LAIR1	19	54867921	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	145575	54867921	4261062	474	113084											
ZIM3	114026	broad.mit.edu	37	chr19	57646819	57646819	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgtgaacttttttatgttGaatgagggttgagttctgcc	12	4	1	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57646819	T	T	57646819	3	4	121	1	0	0	0	0	1	0	0	0	17811	1299	45	3	536	3	ZIM3	19	57646819	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2778898	57646819	1482164	475	113085											
ZNF264	9422	broad.mit.edu	37	chr19	57703223	57703223	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggtcgggcacaggtggGgtccgtcaggccgcccgggg	20	13	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57703223	T	T	57703223	1	4	121	0	1	0	0	0	0	0	0	0	17930	1247	43	2		2	ZNF264	19	57703223	5'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	56404	57703223	1425760	476	113086											
ZNF773	374928	broad.mit.edu	37	chr19	58018365	58018366	+	Missense_Mutation	DNP	GG	TT	TT													cagaatccacactggagtaaGgccttatgagtgcagtgaat							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	58018366	TT	TT	58018365	3	4	121	1	0	0	0	0	1	0	0	0	18275	1000	35	2	916	2	ZNF773	19	58018365	Missense_Mutation	DNP	GG	TCGA-44-6144-01A-11D-1753-08	315142	58018365	1110618	477	113087											
SIRPA	140885	broad.mit.edu	37	chr20	1908673	1908673	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcaacatgtctctttctctCctttgtaacctcctcacact	3	15	4	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1908673	A	A	1908673	1	1	121	0	1	0	0	0	0	0	0	0	14445	870	30	3		3	SIRPA	20	1908673	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08		1908673	61116847	478	113088											
TGM6	343641	broad.mit.edu	37	chr20	2397970	2397970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatctggatccgcagggctGggggtcgctgtctctggcgt	17	10	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2397970	T	T	2397970	3	4	121	1	0	0	0	0	1	0	0	0	15957	1348	47	2	1467	2	TGM6	20	2397970	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	489297	2397970	60627550	479	113089											
C20orf94	128710	broad.mit.edu	37	chr20	10582562	10582562	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtctgctgttgtcattcAgctgatgagcacccaacgca	9	11	3	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10582562	C	C	10582562	1	2	121	0	1	0	0	0	0	0	0	0	2143	203	7	5		5	C20orf94	20	10582562	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	8184592	10582562	52442958	480	113090											
SEC23B	10483	broad.mit.edu	37	chr20	18485673	18485673	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacagagagatctgggcaGaattgccggacaggtggcag	18	7	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18485673	T	T	18485673	1	4	121	0	1	0	0	0	0	0	0	0	14105	957	33	3		3	SEC23B	20	18485673	5'Flank	SNP	G	TCGA-44-6144-01A-11D-1753-08	7903111	18485673	44539847	481	113091											
TPX2	22974	broad.mit.edu	37	chr20	30354472	30354472	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatatcaagaaaaactccaGcccagcctcagaggtaagac	7	13	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30354472	A	A	30354472	3	1	121	1	0	0	0	0	1	0	0	0	16556	971	34	4	353	4	TPX2	20	30354472	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	11868799	30354472	32671048	482	113092											
HCK	3055	broad.mit.edu	37	chr20	30667608	30667608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcatcagccggaaggacGcagagcgccaactgctggct	15	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30667608	T	T	30667608	3	4	121	1	0	0	0	0	1	0	0	0	7060	1087	38	3	488	3	HCK	20	30667608	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	313136	30667608	32357912	483	113093											
GHRH	2691	broad.mit.edu	37	chr20	35885152	35885152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtctgcattcactaacgcCtgccccatggcagggatggc	12	13	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35885152	A	A	35885152	1	1	121	0	1	0	0	0	0	0	0	0	6436	696	24	2		2	GHRH	20	35885152	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	5217544	35885152	27140368	484	113094											
CHD6	84181	broad.mit.edu	37	chr20	40045961	40045961	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccgatgttgagctcttgctCtcctcttcagagtacttccc	7	15	4	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40045961	A	A	40045961	3	1	121	1	0	0	0	0	1	0	0	0	3360	912	32	3	2015	3	CHD6	20	40045961	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	4160809	40045961	22979559	485	113095											
MATN4	8785	broad.mit.edu	37	chr20	43929509	43929509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaagccaacagaacaccCtcccgcccatcactcacggt	7	18	2	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43929509	A	A	43929509	1	1	121	0	1	0	0	0	0	0	0	0	9428	696	24	2		2	MATN4	20	43929509	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	3883548	43929509	19096011	486	113096											
MMP9	4318	broad.mit.edu	37	chr20	44641309	44641310	+	Intron	DNP	GG	TT	TT													gggggttggggatcgggggaGgaacggggcgtgcaggagag							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44641310	TT	TT	44641309	1	4	121	0	1	0	0	0	0	0	0	0	9763	1015	35	2		2	MMP9	20	44641309	Intron	DNP	GG	TCGA-44-6144-01A-11D-1753-08	711800	44641309	18384211	487	113097											
MOCS3	27304	broad.mit.edu	37	chr20	49575314	49575314	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagttttttagtttatccCagtcgctaggagacagaaga	9	6	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49575314	T	T	49575314	1	4	121	0	1	0	0	0	0	0	0	0	9786	609	21	4		4	MOCS3	20	49575314	5'Flank	SNP	C	TCGA-44-6144-01A-11D-1753-08	4934005	49575314	13450206	488	113098											
ARFGAP1	55738	broad.mit.edu	37	chr20	61916199	61916199	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgtcgtggggctcacGtgacttcccttcctacaggc	13	13	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61916199	A	A	61916199	1	1	121	0	1	0	0	0	0	0	0	0	851	1160	40	4		4	ARFGAP1	20	61916199	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	12340885	61916199	1109321	489	113099											
SAMD10	140700	broad.mit.edu	37	chr20	62607069	62607069	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagcagctgcaggctccGcccctcctcacgcacctgca	10	19	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62607069	A	A	62607069	3	1	121	1	0	0	0	0	1	0	0	0	13926	1086	38	4	54	4	SAMD10	20	62607069	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	690870	62607069	418451	490	113100											
OPRL1	4987	broad.mit.edu	37	chr20	62730176	62730176	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtggacctgcccatggtGcctgtcagcccgcagagccc	14	16	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62730176	T	T	62730176	1	4	121	0	1	0	0	0	0	0	0	0	10980	1334	46	3		3	OPRL1	20	62730176	3'UTR	SNP	G	TCGA-44-6144-01A-11D-1753-08	123107	62730176	295344	491	113101											
C21orf63	59271	broad.mit.edu	37	chr21	33839916	33839916	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcagggtgcagccccGgggaaatgagcaatgggact	14	11	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33839916	T	T	33839916	1	4	121	0	1	0	0	0	0	0	0	0	2153	1131	39	1		1	C21orf63	21	33839916	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08		33839916	14289979	492	113102											
DSCR6	53820	broad.mit.edu	37	chr21	38385961	38385961	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaatctgtaatttccttttAatataggcattaatatgctt	5	5	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38385961	T	T	38385961	1	4	121	0	1	0	0	0	0	0	0	0	4813	377	13	5		5	DSCR6	21	38385961	Intron	SNP	A	TCGA-44-6144-01A-11D-1753-08	4546045	38385961	9743934	493	113103											
UMODL1	89766	broad.mit.edu	37	chr21	43504412	43504412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcgggtctcggtgaggCctgatctgtgtgaaggtgtg	18	6	2	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43504412	A	A	43504412	1	1	121	0	1	0	0	0	0	0	0	0	17106	754	26	3		3	UMODL1	21	43504412	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	5118451	43504412	4625483	494	113104											
ZNF280B	140883	broad.mit.edu	37	chr22	22843797	22843797	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatataaactgccacctaagTacaaacatacatcagtaagt	4	9	1	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22843797	C	C	22843797	1	2	121	0	1	0	0	0	0	0	0	0	17941	1653	57	5		5	ZNF280B	22	22843797	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08		22843797	28460769	495	113105											
APOBEC3D	140564	broad.mit.edu	37	chr22	39418930	39418930	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtgctatgaagtgaaaAtaaagaggggccgctcaaat	13	6	1	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39418930	C	C	39418930	3	2	121	1	0	0	0	0	1	0	0	0	794	101	4	5	127	5	APOBEC3D	22	39418930	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	16575133	39418930	11885636	496	113106											
APOBEC3D	140564	broad.mit.edu	37	chr22	39421508	39421508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagaccaggcctgggaGggcaggcccagggtcagggg	20	11	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39421508	T	T	39421508	1	4	121	0	1	0	0	0	0	0	0	0	794	1015	35	2		2	APOBEC3D	22	39421508	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	2578	39421508	11883058	497	113107											
XPNPEP3	63929	broad.mit.edu	37	chr22	41264943	41264943	+	Intron	SNP	T	A	A													ctgctagagataagtgtattTataccatgaagactttctag							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41264943	A	A	41264943	1	1	121	0	1	0	0	0	0	0	0	0	17571	1769	61	5		5	XPNPEP3	22	41264943	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	1843435	41264943	10039623	498	113108	494	2									
XPNPEP3	63929	broad.mit.edu	37	chr22	41264945	41264945	+	Intron	SNP	T	C	C													gctagagataagtgtatttaTaccatgaagactttctagat							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41264945	C	C	41264945	1	2	121	0	1	0	0	0	0	0	0	0	17571	1421	49	5		5	XPNPEP3	22	41264945	Intron	SNP	T	TCGA-44-6144-01A-11D-1753-08	2	41264945	10039621	499	113109	494	2									
XPNPEP3	63929	broad.mit.edu	37	chr22	41310381	41310381	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcttaggagtatgagttgGaatatggctatatttggaat	11	3	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41310381	T	T	41310381	1	4	121	0	1	0	0	0	0	0	0	0	17571	1189	41	3		3	XPNPEP3	22	41310381	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	45436	41310381	9994185	500	113110											
PACSIN2	11252	broad.mit.edu	37	chr22	43272818	43272818	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgccgagtgccgaggggtGagacccctggacagagagag	17	9	0	3			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43272818	A	A	43272818	1	1	121	0	1	0	0	0	0	0	0	0	11469	1305	45	4		4	PACSIN2	22	43272818	Intron	SNP	G	TCGA-44-6144-01A-11D-1753-08	1962437	43272818	8031748	501	113111											
PHF21B	112885	broad.mit.edu	37	chr22	45278997	45278997	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgggggtgctggacggtgGggtgtgtggctgccactgag	21	8	0	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45278997	C	C	45278997	3	2	121	1	0	0	0	0	1	0	0	0	11929	1232	43	4	34	4	PHF21B	22	45278997	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	2006179	45278997	6025569	502	113112											
GTSE1	51512	broad.mit.edu	37	chr22	46712201	46712201	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgcttggtcagaatcttctCaattgaataagactagaagt	9	7	3	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46712201	G	G	46712201	3	3	121	1	0	0	0	0	1	0	0	0	6950	827	29	4	1346	4	GTSE1	22	46712201	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	1433204	46712201	4592365	503	113113											
CELSR1	9620	broad.mit.edu	37	chr22	46829346	46829346	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccgtcactcacaccactggGaaccttcggtgccacggtcg	10	17	2	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46829346	A	A	46829346	3	1	121	1	0	0	0	0	1	0	0	0	3251	1174	41	4	4613	4	CELSR1	22	46829346	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	117145	46829346	4475220	504	113114											
TUBGCP6	85378	broad.mit.edu	37	chr22	50662598	50662598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctccagctcctcctccaGggacttcagccttctctccc	5	21	3	0			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50662598	T	T	50662598	3	4	121	1	0	0	0	0	1	0	0	0	16896	991	35	2	3269	2	TUBGCP6	22	50662598	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	3833252	50662598	641968	505	113115											
CNKSR2	22866	broad.mit.edu	37	chrX	21534749	21534749	+	Frame_Shift_Del	DEL	G	-	-													tggaagccccttgctctgcaGgtaatgaagcttaatcataa							TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21534749	-	-	21534749	7	5	121	1	0	1	0	1	0	0	0	0	3639	1014	35	0	991	0	CNKSR2	23	21534749	Frame_Shift_Del	DEL	G	TCGA-44-6144-01A-11D-1753-08		21534749	133735811	506	113116											
SSX3	10214	broad.mit.edu	37	chrX	48218014	48218014	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaatctccgtaagaacaGggagctttgtggtattttaa	12	6	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48218014	T	T	48218014	1	4	121	0	1	0	0	0	0	0	0	0	15323	1015	35	2		2	SSX3	23	48218014	5'Flank	SNP	G	TCGA-44-6144-01A-11D-1753-08	26683265	48218014	107052546	507	113117											
CHM	1121	broad.mit.edu	37	chrX	85128007	85128007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggaaaaaatatttccCaaccacaccaacatcttaat	3	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85128007	A	A	85128007	1	1	121	0	1	0	0	0	0	0	0	0	3381	609	21	2		2	CHM	23	85128007	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	36909993	85128007	70142553	508	113118											
GPRASP2	114928	broad.mit.edu	37	chrX	101969993	101969993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcaaggcccaaaactgagGcccaagcaatgtctggggca	13	12	1	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101969993	T	T	101969993	3	4	121	1	0	0	0	0	1	0	0	0	6789	1203	42	3	198	3	GPRASP2	23	101969993	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	16841986	101969993	53300567	509	113119											
NXF3	56000	broad.mit.edu	37	chrX	102334543	102334543	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatttttatattcctgctAtccttgaagaacttgcagaa	6	7	0	4			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102334543	G	G	102334543	2	3	121	1	0	0	0	0	0	0	0	1	10880	446	16	5		5	NXF3	23	102334543	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	364550	102334543	52936017	510	113120											
TCEAL5	340543	broad.mit.edu	37	chrX	102529026	102529026	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttttccttagctcctcctGagcccttgacacatctccac	4	16	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102529026	C	C	102529026	3	2	121	1	0	0	0	0	1	0	0	0	15796	1299	45	4	158	4	TCEAL5	23	102529026	Missense_Mutation	SNP	G	TCGA-44-6144-01A-11D-1753-08	194483	102529026	52741534	511	113121											
MUM1L1	139221	broad.mit.edu	37	chrX	105449935	105449935	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtatgatgataaatcacaAgcacccacaatggtcgatac	7	10	1	2			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105449935	G	G	105449935	2	3	121	1	0	0	0	0	0	0	0	1	10080	69	3	5		5	MUM1L1	23	105449935	Silent	SNP	A	TCGA-44-6144-01A-11D-1753-08	2920909	105449935	49820625	512	113122											
DCX	1641	broad.mit.edu	37	chrX	110653443	110653443	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatccccttgaagtagcggtCcccattgcggtagaaacgta	10	11	0	2	rs104894779		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110653443	T	T	110653443	3	4	121	1	0	0	0	0	1	0	0	0	4351	855	30	4	937	4	DCX	23	110653443	Missense_Mutation	SNP	C	TCGA-44-6144-01A-11D-1753-08	5203508	110653443	44617117	513	113123											
ALG13	79868	broad.mit.edu	37	chrX	110980041	110980041	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatcaagctattagtaccActtcagtttcctcacagaat	4	11	3	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110980041	G	G	110980041	3	3	121	1	0	0	0	0	1	0	0	0	515	159	6	5	2861	5	ALG13	23	110980041	Missense_Mutation	SNP	A	TCGA-44-6144-01A-11D-1753-08	326598	110980041	44290519	514	113124											
GPR112	139378	broad.mit.edu	37	chrX	135441383	135441383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgtacagaatttctgCattgcaggccaagttgcact	9	10	2	1			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135441383	A	A	135441383	1	1	121	0	1	0	0	0	0	0	0	0	6694	725	25	3		3	GPR112	23	135441383	Intron	SNP	C	TCGA-44-6144-01A-11D-1753-08	24461342	135441383	19829177	515	113125											
MTOR	2475	broad.mit.edu	37	chr1	11308080	11308080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggttttgttccgaagccCatgagatctttgcagtactt	10	9	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11308080	A	A	11308080	3	1	122	1	0	0	0	0	1	0	0	0	10048	594	21	2	6945	2	MTOR	1	11308080	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08		11308080	237942541	1	113126											
PTCHD2	57540	broad.mit.edu	37	chr1	11579720	11579720	+	Intron	SNP	T	C	C													ggcttccctggaagcgagcgTggaccacagtgggctttgat							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11579720	C	C	11579720	1	2	122	0	1	0	0	0	0	0	0	0	12839	1711	59	5		5	PTCHD2	1	11579720	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	271640	11579720	237670901	2	113127	495	2									
PTCHD2	57540	broad.mit.edu	37	chr1	11579722	11579722	+	Intron	SNP	G	T	T													cttccctggaagcgagcgtgGaccacagtgggctttgattc							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11579722	T	T	11579722	1	4	122	0	1	0	0	0	0	0	0	0	12839	1189	41	3		3	PTCHD2	1	11579722	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2	11579722	237670899	3	113128	495	2									
PRAMEF2	65122	broad.mit.edu	37	chr1	12918928	12918928	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagcctgctgagagaccagGccttgtccatctctgccatg	11	13	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12918928	C	C	12918928	3	2	122	1	0	0	0	0	1	0	0	0	12537	1203	42	4	66	4	PRAMEF2	1	12918928	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1339206	12918928	236331693	4	113129											
LOC440563	440563	broad.mit.edu	37	chr1	13182980	13182980	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggataagatttctcaaccCcactatgtgcttaagagtca	8	9	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13182980	A	A	13182980	1	1	122	0	1	0	0	0	0	0	0	0	8962	638	22	2		2	LOC440563	1	13182980	3'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	264052	13182980	236067641	5	113130											
CLCNKA	1187	broad.mit.edu	37	chr1	16351246	16351246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgcctccctgatacgcGgctgtccccagcacaccagt	11	16	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16351246	T	T	16351246	1	4	122	0	1	0	0	0	0	0	0	0	3500	1131	39	1		1	CLCNKA	1	16351246	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	3168266	16351246	232899375	6	113131											
PADI2	11240	broad.mit.edu	37	chr1	17410262	17410262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaggtactggaagcagaCcttcagctcacagttggttt	11	8	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17410262	A	A	17410262	3	1	122	1	0	0	0	0	1	0	0	0	11472	507	18	3	1020	3	PADI2	1	17410262	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1059016	17410262	231840359	7	113132											
UBR4	23352	broad.mit.edu	37	chr1	19449430	19449430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagcagcttcttgatcccaCgcacgtgagagtccagggtg	12	12	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19449430	A	A	19449430	3	1	122	1	0	0	0	0	1	0	0	0	17030	536	19	3	6002	3	UBR4	1	19449430	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2039168	19449430	229801191	8	113133											
HSPG2	3339	broad.mit.edu	37	chr1	22222444	22222444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccccgctgcccaggtccCcactgcccaggtcgtctata	9	18	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22222444	A	A	22222444	3	1	122	1	0	0	0	0	1	0	0	0	7500	623	22	2	13340	2	HSPG2	1	22222444	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2773014	22222444	227028177	9	113134											
AIM1L	55057	broad.mit.edu	37	chr1	26672510	26672510	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actggcggcaccatgcgggaGacctgacggccccgtggcag	16	14	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26672510	C	C	26672510	1	2	122	0	1	0	0	0	0	0	0	0	431	957	33	4		4	AIM1L	1	26672510	5'Flank	SNP	G	TCGA-44-6145-01A-11D-1753-08	4450066	26672510	222578111	10	113135											
PTAFR	5724	broad.mit.edu	37	chr1	28477276	28477276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgttgcacaggaatttgGggagtatccagttgccctgg	13	10	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28477276	T	T	28477276	3	4	122	1	0	0	0	0	1	0	0	0	12829	1232	43	2	775	2	PTAFR	1	28477276	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1804766	28477276	220773345	11	113136											
PUM1	9698	broad.mit.edu	37	chr1	31426788	31426788	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttggcttcagcgcctggAgcagcagagatgtatcttcc	11	11	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31426788	G	G	31426788	2	3	122	1	0	0	0	0	0	0	0	1	12933	291	11	5		5	PUM1	1	31426788	Silent	SNP	A	TCGA-44-6145-01A-11D-1753-08	2949512	31426788	217823833	12	113137											
ZSCAN20	7579	broad.mit.edu	37	chr1	33959006	33959006	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagccaagagcagccaccCaccagggacatgccctttct	9	15	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33959006	T	T	33959006	3	4	122	1	0	0	0	0	1	0	0	0	18361	594	21	4	1686	4	ZSCAN20	1	33959006	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2532218	33959006	215291615	13	113138											
SLFNL1	200172	broad.mit.edu	37	chr1	41486066	41486066	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accagtgcataggccttccgCggccgcctcaccacttcaat	8	17	2	0	rs148645268		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41486066	G	G	41486066	2	3	122	1	0	0	0	0	0	0	0	1	14852	755	27	4		4	SLFNL1	1	41486066	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	7527060	41486066	207764555	14	113139											
PPAP2B	8613	broad.mit.edu	37	chr1	57044798	57044798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgctgcggatagtggCgggtcggccccggctccggg	20	12	0	0	rs146636536	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57044798	A	A	57044798	1	1	122	0	1	0	0	0	0	0	0	0	12387	783	27	3		3	PPAP2B	1	57044798	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	15558732	57044798	192205823	15	113140											
INSL5	10022	broad.mit.edu	37	chr1	67263820	67263820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagtgggcatctgtccaCcccaaagacggtcttcccct	8	16	3	1	rs144286383		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67263820	A	A	67263820	3	1	122	1	0	0	0	0	1	0	0	0	7839	507	18	3	127	3	INSL5	1	67263820	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	10219022	67263820	181986801	16	113141											
IL23R	149233	broad.mit.edu	37	chr1	67685539	67685539	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggaagattgcttgagcctAggagtttgagactggcctgg	15	7	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67685539	T	T	67685539	1	4	122	0	1	0	0	0	0	0	0	0	7746	435	15	5		5	IL23R	1	67685539	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	421719	67685539	181565082	17	113142											
RPE65	6121	broad.mit.edu	37	chr1	68912330	68912330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggtgaaaactcacatGggaggaggagccaagctagg	15	7	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68912330	T	T	68912330	1	4	122	0	1	0	0	0	0	0	0	0	13656	1363	47	2		2	RPE65	1	68912330	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1226791	68912330	180338291	18	113143											
LRRIQ3	127255	broad.mit.edu	37	chr1	74507107	74507107	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggatttttcttttagaaacAgagcttttctctctctagct	7	8	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74507107	T	T	74507107	3	4	122	1	0	0	0	0	1	0	0	0	9117	188	7	5	374	5	LRRIQ3	1	74507107	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	5594777	74507107	174743514	19	113144											
SLC44A5	204962	broad.mit.edu	37	chr1	75862325	75862325	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaggaaaaagcacaaaaGgcaaaaaaaatatttgtagg	8	4	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75862325	T	T	75862325	1	4	122	0	1	0	0	0	0	0	0	0	14753	1015	35	2		2	SLC44A5	1	75862325	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1355218	75862325	173388296	20	113145											
RABGGTB	5876	broad.mit.edu	37	chr1	76253183	76253183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccactttattttgaaaggGcactccacagaaggatgtta	8	8	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76253183	T	T	76253183	3	4	122	1	0	0	0	0	1	0	0	0	13076	1217	42	3	11	3	RABGGTB	1	76253183	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	390858	76253183	172997438	21	113146											
CLCA1	1179	broad.mit.edu	37	chr1	86951077	86951077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagaagctccaaacaagCaaaatcaaaaatgcaatctc	4	10	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86951077	A	A	86951077	3	1	122	1	0	0	0	0	1	0	0	0	3488	711	25	3	809	3	CLCA1	1	86951077	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	10697894	86951077	162299544	22	113147											
LPPR4	9890	broad.mit.edu	37	chr1	99771542	99771542	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgccgcgagccaatacccCatctgtagaagaccctgtca	8	15	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771542	T	T	99771542	3	4	122	1	0	0	0	0	1	0	0	0	9014	594	21	4	1294	4	LPPR4	1	99771542	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	12820465	99771542	149479079	23	113148											
OLFM3	118427	broad.mit.edu	37	chr1	102270473	102270473	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgtccatgtaccagaccTgagaagaaggaaaaaaataa	8	7	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102270473	A	A	102270473	1	1	122	0	1	0	0	0	0	0	0	0	10949	1594	55	5		5	OLFM3	1	102270473	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	2498931	102270473	146980148	24	113149											
EPS8L3	79574	broad.mit.edu	37	chr1	110300520	110300520	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagacggtgggccagagatCaccctgagacacccctactc	10	15	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110300520	A	A	110300520	1	1	122	0	1	0	0	0	0	0	0	0	5239	841	29	3		3	EPS8L3	1	110300520	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	8030047	110300520	138950101	25	113150											
SLC6A17	388662	broad.mit.edu	37	chr1	110719235	110719235	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctctgcctgatgggggttcCctgtcctctctgcaggtgat	13	12	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110719235	G	G	110719235	1	3	122	0	1	0	0	0	0	0	0	0	14794	638	22	4		4	SLC6A17	1	110719235	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	418715	110719235	138531386	26	113151											
KCNA2	3737	broad.mit.edu	37	chr1	111146095	111146095	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaggggaggatgggatcTttggacagcttgtcacttgc	16	7	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111146095	G	G	111146095	3	3	122	1	0	0	0	0	1	0	0	0	8073	1609	56	5	193	5	KCNA2	1	111146095	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	426860	111146095	138104526	27	113152											
CHI3L2	1117	broad.mit.edu	37	chr1	111781582	111781582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccccctgtaccctcagCtccctgccatgtctgggtag	9	16	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111781582	T	T	111781582	1	4	122	0	1	0	0	0	0	0	0	0	3372	812	28	4		4	CHI3L2	1	111781582	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	635487	111781582	137469039	28	113153											
HIPK1	204851	broad.mit.edu	37	chr1	114505013	114505013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaccgattgtaccccagGcaccagctgctcagccacta	8	16	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114505013	C	C	114505013	3	2	122	1	0	0	0	0	1	0	0	0	7183	1203	42	4	2104	4	HIPK1	1	114505013	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2723431	114505013	134745608	29	113154											
ITGA10	8515	broad.mit.edu	37	chr1	145534009	145534009	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggaggaaaggagggaagGtgcacatatttgagggtttg	19	2	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145534009	A	A	145534009	1	1	122	0	1	0	0	0	0	0	0	0	7943	1276	44	4		4	ITGA10	1	145534009	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	31028996	145534009	103716612	30	113155											
CHD1L	9557	broad.mit.edu	37	chr1	146728245	146728245	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtactatttaagaacttGggttgaatgtattatgaatg	10	2	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146728245	A	A	146728245	1	1	122	0	1	0	0	0	0	0	0	0	3355	1363	47	4		4	CHD1L	1	146728245	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1194236	146728245	102522376	31	113156											
PIP5K1A	8394	broad.mit.edu	37	chr1	151219439	151219439	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagagtcagagttcaccCatgtgagtatctgggatgtg	13	7	3	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151219439	T	T	151219439	3	4	122	1	0	0	0	0	1	0	0	0	12034	594	21	4	1742	4	PIP5K1A	1	151219439	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	4491194	151219439	98031182	32	113157											
PI4KB	5298	broad.mit.edu	37	chr1	151274490	151274490	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggttgatgccagggtgaGgacaagagacatggcttcca	14	7	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151274490	A	A	151274490	1	1	122	0	1	0	0	0	0	0	0	0	11969	1015	35	4		4	PI4KB	1	151274490	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	55051	151274490	97976131	33	113158											
SPRR3	6707	broad.mit.edu	37	chr1	152975939	152975939	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtgccaggctacacaaAgctaccagagccatgtcctt	8	14	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152975939	T	T	152975939	3	4	122	1	0	0	0	0	1	0	0	0	15221	72	3	5	445	5	SPRR3	1	152975939	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	1701449	152975939	96274682	34	113159											
RHBG	57127	broad.mit.edu	37	chr1	156351336	156351336	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacttcagagaggcagagGgggtggcctgggcaggggag	22	6	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156351336	A	A	156351336	1	1	122	0	1	0	0	0	0	0	0	0	13433	1247	43	4		4	RHBG	1	156351336	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	3375397	156351336	92899285	35	113160											
CD1A	909	broad.mit.edu	37	chr1	158226889	158226891	+	Intron	DEL	AGG	-	-													aggcccaggctggaaatgccAggaagtggacctcaggcata							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158226891	-	-	158226889	6	5	122	0	1	1	0	1	0	0	0	0	3004	203	7	0		0	CD1A	1	158226889	Intron	DEL	AGG	TCGA-44-6145-01A-11D-1753-08	1875553	158226889	91023732	36	113161											
OR10T2	128360	broad.mit.edu	37	chr1	158368884	158368884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagggtgacaaattgctaCatagcgatcatatcccatca	8	10	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158368884	A	A	158368884	3	1	122	1	0	0	0	0	1	0	0	0	11013	478	17	3	573	3	OR10T2	1	158368884	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	141995	158368884	90881737	37	113162											
SPTA1	6708	broad.mit.edu	37	chr1	158592830	158592830	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggactgccgaggcttcCagcaactgttcccagcgctt	11	14	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158592830	A	A	158592830	2	1	122	1	0	0	0	0	0	0	0	1	15234	581	21	2		2	SPTA1	1	158592830	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	223946	158592830	90657791	38	113163											
OR10J3	441911	broad.mit.edu	37	chr1	159283954	159283954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcacagaatggcaggcCaaacacagatgttacttgga	11	9	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159283954	A	A	159283954	3	1	122	1	0	0	0	0	1	0	0	0	11005	594	21	2	495	2	OR10J3	1	159283954	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	691124	159283954	89966667	39	113164											
SLAMF6	114836	broad.mit.edu	37	chr1	160460756	160460756	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaaggagagtcctctGggagtactgagagatgcaga	17	5	1	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160460756	A	A	160460756	1	1	122	0	1	0	0	0	0	0	0	0	14481	1363	47	4		4	SLAMF6	1	160460756	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1176802	160460756	88789865	40	113165											
SLAMF1	6504	broad.mit.edu	37	chr1	160593832	160593832	+	Intron	DEL	C	-	-													ccgagcctgtggagagaggtCccctgcttaccacagagagt							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160593832	-	-	160593832	6	5	122	0	1	1	0	1	0	0	0	0	14480	870	30	0		0	SLAMF1	1	160593832	Intron	DEL	C	TCGA-44-6145-01A-11D-1753-08	133076	160593832	88656789	41	113166											
RGS4	5999	broad.mit.edu	37	chr1	163042127	163042127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaagctctaccattagGtatcttttaaagaaagctgg	7	8	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163042127	T	T	163042127	1	4	122	0	1	0	0	0	0	0	0	0	13416	1276	44	3		3	RGS4	1	163042127	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2448295	163042127	86208494	42	113167											
PBX1	5087	broad.mit.edu	37	chr1	164789369	164789369	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcatgagcgtgcagtcacTcaatggggattcttaccaag	11	9	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164789369	G	G	164789369	3	3	122	1	0	0	0	0	1	0	0	0	11586	1551	54	5	1084	5	PBX1	1	164789369	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	1747242	164789369	84461252	43	113168											
MAEL	84944	broad.mit.edu	37	chr1	166962174	166962174	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtactttttcttacaagctCatgtacagctgtgttcttaa	6	8	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166962174	A	A	166962174	1	1	122	0	1	0	0	0	0	0	0	0	9242	841	29	3		3	MAEL	1	166962174	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2172805	166962174	82288447	44	113169											
F5	2153	broad.mit.edu	37	chr1	169493193	169493193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattttttaaaaacccagCaatttctcaagtgagtttaa	5	6	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169493193	A	A	169493193	1	1	122	0	1	0	0	0	0	0	0	0	5391	725	25	3		3	F5	1	169493193	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2531019	169493193	79757428	45	113170											
SELL	6402	broad.mit.edu	37	chr1	169670773	169670773	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtaaccatgactgccactgGaatgaagagggggttataat	12	6	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169670773	A	A	169670773	3	1	122	1	0	0	0	0	1	0	0	0	14129	1174	41	4	121	4	SELL	1	169670773	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	177580	169670773	79579848	46	113171											
SLC9A11	284525	broad.mit.edu	37	chr1	173493226	173493226	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtgcttttaattttttaAgaagtacctaaaaacaaata	4	4	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173493226	G	G	173493226	3	3	122	1	0	0	0	0	1	0	0	0	14825	72	3	5	884	5	SLC9A11	1	173493226	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	3822453	173493226	75757395	47	113172											
KIAA1614	57710	broad.mit.edu	37	chr1	180886014	180886014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatctggatagcacatccCtgacctccgaggaggtcttt	10	12	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180886014	A	A	180886014	3	1	122	1	0	0	0	0	1	0	0	0	8318	680	24	2	781	2	KIAA1614	1	180886014	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	7392788	180886014	68364607	48	113173											
CACNA1E	777	broad.mit.edu	37	chr1	181706896	181706896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtttctggggaatgagCaagggttggaaattgtccac	14	6	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181706896	A	A	181706896	1	1	122	0	1	0	0	0	0	0	0	0	2568	725	25	3		3	CACNA1E	1	181706896	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	820882	181706896	67543725	49	113174											
DHX9	1660	broad.mit.edu	37	chr1	182827319	182827319	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgtcagacaactgtacCatcttggagtggttgaagct	10	9	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182827319	T	T	182827319	3	4	122	1	0	0	0	0	1	0	0	0	4556	594	21	4	780	4	DHX9	1	182827319	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1120423	182827319	66423302	50	113175											
FAM5C	339479	broad.mit.edu	37	chr1	190129757	190129758	+	Intron	DNP	GG	TC	TC													taaatagaactcactttttcGgcaataaacttaattgctta					rs12079649	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	190129758	TC	TC	190129757	1	4	122	0	1	0	0	0	0	0	0	0	5645	1131	39	1		1	FAM5C	1	190129757	Intron	DNP	GG	TCGA-44-6145-01A-11D-1753-08	7302438	190129757	59120864	51	113176											
ASPM	259266	broad.mit.edu	37	chr1	197112663	197112663	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtagtagatcgacgtacaGagagtggcaagcaagttgca	14	6	0	2	rs140646088		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197112663	A	A	197112663	3	1	122	1	0	0	0	0	1	0	0	0	1060	942	33	4	9818	4	ASPM	1	197112663	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	6982906	197112663	52137958	52	113177											
KIF21B	23046	broad.mit.edu	37	chr1	200960046	200960046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgccagtccaccttaccGggcaggacgggtgccattga	13	13	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200960046	T	T	200960046	2	4	122	1	0	0	0	0	0	0	0	1	8359	1130	39	1		1	KIF21B	1	200960046	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	3847383	200960046	48290575	53	113178											
CACNA1S	779	broad.mit.edu	37	chr1	201062977	201062977	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacagtcctcagcgagggtCtgaccttcagtctccccaca	8	16	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201062977	A	A	201062977	1	1	122	0	1	0	0	0	0	0	0	0	2573	928	32	3		3	CACNA1S	1	201062977	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	102931	201062977	48187644	54	113179											
PRELP	5549	broad.mit.edu	37	chr1	203453067	203453067	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagctctacctggacagtaAcaagattgagaccatcccta	7	13	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203453067	G	G	203453067	3	3	122	1	0	0	0	0	1	0	0	0	12579	43	2	5	757	5	PRELP	1	203453067	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	2390090	203453067	45797554	55	113180											
PIK3C2B	5287	broad.mit.edu	37	chr1	204410551	204410551	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccactctaggctgcctcCttctctctcccaccctggtc	6	19	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204410551	G	G	204410551	1	3	122	0	1	0	0	0	0	0	0	0	12005	696	24	4		4	PIK3C2B	1	204410551	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	957484	204410551	44840070	56	113181											
FAM71A	149647	broad.mit.edu	37	chr1	212798394	212798394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcaccaaaaggggagaaGtgattgatgtgcacaaccgt	12	7	1	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212798394	A	A	212798394	3	1	122	1	0	0	0	0	1	0	0	0	5658	1029	36	4	177	4	FAM71A	1	212798394	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	8387843	212798394	36452227	57	113182											
CENPF	1063	broad.mit.edu	37	chr1	214821312	214821312	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcttctattgtattagttGatgattaaagggaagatctg	10	3	3	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214821312	A	A	214821312	1	1	122	0	1	0	0	0	0	0	0	0	3261	1305	45	4		4	CENPF	1	214821312	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2022918	214821312	34429309	58	113183											
KCNK2	3776	broad.mit.edu	37	chr1	215408346	215408346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcaggagctgactccttGtaggaggaccctgtcagtga	12	10	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215408346	T	T	215408346	3	4	122	1	0	0	0	0	1	0	0	0	8136	1377	48	3	1208	3	KCNK2	1	215408346	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	587034	215408346	33842275	59	113184											
USH2A	7399	broad.mit.edu	37	chr1	216424377	216424377	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgtagattgtagaatcCattctggcactgattgcact	8	9	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216424377	T	T	216424377	3	4	122	1	0	0	0	0	1	0	0	0	17162	603	21	4	13831	4	USH2A	1	216424377	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1016031	216424377	32826244	60	113185											
TGFB2	7042	broad.mit.edu	37	chr1	218607527	218607527	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctccttcgatgtaactgAtgctgttcatgaatggcttc	9	10	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218607527	T	T	218607527	3	4	122	1	0	0	0	0	1	0	0	0	15941	333	12	5	712	5	TGFB2	1	218607527	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	2183150	218607527	30643094	61	113186											
SUSD4	55061	broad.mit.edu	37	chr1	223465689	223465689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcatcagagagaagagcCcagggtattgagctgtcaca	12	10	2	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223465689	A	A	223465689	1	1	122	0	1	0	0	0	0	0	0	0	15528	638	22	2		2	SUSD4	1	223465689	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	4858162	223465689	25784932	62	113187											
TMEM63A	9725	broad.mit.edu	37	chr1	226041437	226041437	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgccattgccgatgaaggCcgaggcgatgacatagttca	12	10	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226041437	G	G	226041437	3	3	122	1	0	0	0	0	1	0	0	0	16313	739	26	4	757	4	TMEM63A	1	226041437	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2575748	226041437	23209184	63	113188											
RAB4A	5867	broad.mit.edu	37	chr1	229438646	229438646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgggctcaggtattcaGtacggagatgctgccttgag	14	7	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229438646	T	T	229438646	3	4	122	1	0	0	0	0	1	0	0	0	13054	1020	36	3	605	3	RAB4A	1	229438646	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	3397209	229438646	19811975	64	113189											
GNG4	2786	broad.mit.edu	37	chr1	235715385	235715385	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactttgaaggtcagaaaagGaggcgttttcatcacacacg	11	8	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235715385	T	T	235715385	1	4	122	0	1	0	0	0	0	0	0	0	6593	1189	41	3		3	GNG4	1	235715385	3'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	6276739	235715385	13535236	65	113190											
LYST	1130	broad.mit.edu	37	chr1	235918893	235918893	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggaaaatccacgattctTcagaaatttatctttttgtt	5	7	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235918893	A	A	235918893	4	1	122	1	0	0	0	0	0	1	0	0	9216	1792	62	5	4407	5	LYST	1	235918893	Nonsense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	203508	235918893	13331728	66	113191											
FMN2	56776	broad.mit.edu	37	chr1	240306177	240306178	+	Intron	DNP	TG	AA	AA													acatggacagacactggcaaTggcctcagctcctcatcaaa							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	240306178	AA	AA	240306177	1	1	122	0	1	0	0	0	0	0	0	0	6008	1479	51	5		5	FMN2	1	240306177	Intron	DNP	TG	TCGA-44-6145-01A-11D-1753-08	4387284	240306177	8944444	67	113192											
FMN2	56776	broad.mit.edu	37	chr1	240306225	240306225	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcattcggggccgcatggcAgccaccagcccatacaatac	10	15	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240306225	G	G	240306225	1	3	122	0	1	0	0	0	0	0	0	0	6008	203	7	5		5	FMN2	1	240306225	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	48	240306225	8944396	68	113193											
GREM2	64388	broad.mit.edu	37	chr1	240656261	240656261	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggctgagctgcgtccggCccggcgctcactgcttgtcc	15	16	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240656261	A	A	240656261	1	1	122	0	1	0	0	0	0	0	0	0	6828	754	26	3		3	GREM2	1	240656261	3'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	350036	240656261	8594360	69	113194											
EXO1	9156	broad.mit.edu	37	chr1	242030408	242030408	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatattggtcatatttaaaGaaatcattgcccaacgcaaa	6	7	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242030408	T	T	242030408	1	4	122	0	1	0	0	0	0	0	0	0	5342	957	33	3		3	EXO1	1	242030408	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1374147	242030408	7220213	70	113195											
OR2L13	284521	broad.mit.edu	37	chr1	248185905	248185905	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattgcgtgttcctatggctGggttctccttgctgtctacc	10	12	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248185905	C	C	248185905	1	2	122	0	1	0	0	0	0	0	0	0	11100	1363	47	4		4	OR2L13	1	248185905	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	6155497	248185905	1064716	71	113196											
OR2L3	391192	broad.mit.edu	37	chr1	248224588	248224588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcacagtgtttttgagcaCcaccatctttctcgtgtttc	9	11	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248224588	A	A	248224588	3	1	122	1	0	0	0	0	1	0	0	0	11102	507	18	3	607	3	OR2L3	1	248224588	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	38683	248224588	1026033	72	113197											
OR2M7	391196	broad.mit.edu	37	chr1	248487473	248487473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgggtctcatgagattgGtgtatcttagagggtggcaa	14	4	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487473	T	T	248487473	3	4	122	1	0	0	0	0	1	0	0	0	11108	1261	44	3	543	3	OR2M7	1	248487473	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	262885	248487473	763148	73	113198											
LPIN1	23175	broad.mit.edu	37	chr2	11922600	11922600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccagtgtagtccagacaGcaaacaagacggattctcct	9	12	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11922600	T	T	11922600	3	4	122	1	0	0	0	0	1	0	0	0	9005	971	34	3	1145	3	LPIN1	2	11922600	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08		11922600	231276773	74	113199											
NBAS	51594	broad.mit.edu	37	chr2	15358906	15358906	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactcccttacctgtctctgGggccaggaggctttgagaat	11	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15358906	A	A	15358906	2	1	122	1	0	0	0	0	0	0	0	1	10280	1219	43	4		4	NBAS	2	15358906	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	3436306	15358906	227840467	75	113200											
MATN3	4148	broad.mit.edu	37	chr2	20197026	20197026	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacttgtcacggactgacCgcacgtggtgcaggaaagaa	12	11	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20197026	T	T	20197026	1	4	122	0	1	0	0	0	0	0	0	0	9427	667	23	4		4	MATN3	2	20197026	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	4838120	20197026	223002347	76	113201											
OTOF	9381	broad.mit.edu	37	chr2	26680870	26680870	+	3'UTR	DEL	G	-	-													aagccactgaaaggaaatgcGgcagggctggggagcggctg							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26680870	-	-	26680870	6	5	122	0	1	1	0	1	0	0	0	0	11397	1131	39	0		0	OTOF	2	26680870	3'UTR	DEL	G	TCGA-44-6145-01A-11D-1753-08	6483844	26680870	216518503	77	113202											
OTOF	9381	broad.mit.edu	37	chr2	26689581	26689581	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagcgacgggagtctcaCccggaccacatagactcgga	13	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26689581	A	A	26689581	5	1	122	1	0	0	0	0	0	0	1	0	11397	521	18	3	1721	3	OTOF	2	26689581	Splice_Site	SNP	C	TCGA-44-6145-01A-11D-1753-08	8711	26689581	216509792	78	113203											
FAM179A	165186	broad.mit.edu	37	chr2	29268297	29268297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagcacccccagccccacCccaccccatctcctggcaga	7	22	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29268297	A	A	29268297	1	1	122	0	1	0	0	0	0	0	0	0	5550	638	22	2		2	FAM179A	2	29268297	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2578716	29268297	213931076	79	113204											
RASGRP3	25780	broad.mit.edu	37	chr2	33745579	33745579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtttccatagataaccaacTtgcaatcttccagctgccaa	5	13	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33745579	A	A	33745579	1	1	122	0	1	0	0	0	0	0	0	0	13184	1624	56	5		5	RASGRP3	2	33745579	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	4477282	33745579	209453794	80	113205											
VIT	5212	broad.mit.edu	37	chr2	37032694	37032694	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctggcccacggacaaagtgGaggaggcttcaagacttgcg	15	10	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37032694	T	T	37032694	4	4	122	1	0	0	0	0	0	1	0	0	17298	1175	41	3	1451	3	VIT	2	37032694	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	3287115	37032694	206166679	81	113206											
CEBPZ	10153	broad.mit.edu	37	chr2	37443589	37443589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagcggggatttaaaaaCttaattcaaattatgtctat	9	4	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37443589	A	A	37443589	1	1	122	0	1	0	0	0	0	0	0	0	3234	580	20	3		3	CEBPZ	2	37443589	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	410895	37443589	205755784	82	113207											
LRPPRC	10128	broad.mit.edu	37	chr2	44152130	44152130	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacaatccctggagctccctCaaaaccaaatactcctttcc	4	16	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44152130	A	A	44152130	1	1	122	0	1	0	0	0	0	0	0	0	9052	841	29	3		3	LRPPRC	2	44152130	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	6708541	44152130	199047243	83	113208											
CRIPT	9419	broad.mit.edu	37	chr2	46851311	46851311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtttcaggcatctgtgCgatgtgtggaaaaaaggttt	12	4	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46851311	A	A	46851311	3	1	122	1	0	0	0	0	1	0	0	0	3910	768	27	3	269	3	CRIPT	2	46851311	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2699181	46851311	196348062	84	113209											
WDR92	116143	broad.mit.edu	37	chr2	68374755	68374755	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtaagcagatatttataaTctattaatatcatatttatg	4	3	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68374755	A	A	68374755	1	1	122	0	1	0	0	0	0	0	0	0	17466	1450	50	5		5	WDR92	2	68374755	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	21523444	68374755	174824618	85	113210											
NAGK	55577	broad.mit.edu	37	chr2	71303832	71303832	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcccgagattgacccgGtgagttgaggtgggagtgaa	17	6	0	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71303832	T	T	71303832	5	4	122	1	0	0	0	0	0	0	1	0	10236	1275	44	3	934	3	NAGK	2	71303832	Splice_Site	SNP	G	TCGA-44-6145-01A-11D-1753-08	2929077	71303832	171895541	86	113211											
DYSF	8291	broad.mit.edu	37	chr2	71753445	71753445	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaggagcccacttctgcctGaaggtcttccgggccgagga	14	13	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71753445	C	C	71753445	2	2	122	1	0	0	0	0	0	0	0	1	4899	1277	45	4		4	DYSF	2	71753445	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	449613	71753445	171445928	87	113212											
CTNNA2	1496	broad.mit.edu	37	chr2	80136945	80136945	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagtcttgggatctccattCtcatgtcttggtggattctg	10	8	5	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80136945	A	A	80136945	1	1	122	0	1	0	0	0	0	0	0	0	4047	928	32	3		3	CTNNA2	2	80136945	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	8383500	80136945	163062428	88	113213											
IL1RL1	9173	broad.mit.edu	37	chr2	102964500	102964500	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctaaaaatgttctggattGaggccactctgctctggaga	10	9	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102964500	A	A	102964500	3	1	122	1	0	0	0	0	1	0	0	0	7733	1291	45	4	1113	4	IL1RL1	2	102964500	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	22827555	102964500	140234873	89	113214											
SLC5A7	60482	broad.mit.edu	37	chr2	108618444	108618444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataccaaaagccgtggctggGaactgttgactcatctgaag	11	9	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108618444	T	T	108618444	3	4	122	1	0	0	0	0	1	0	0	0	14784	1174	41	3	707	3	SLC5A7	2	108618444	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5653944	108618444	134580929	90	113215											
IL1F9	56300	broad.mit.edu	37	chr2	113742478	113742478	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacccttccttttctaccGtgccaagactggtaggacct	8	13	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113742478	A	A	113742478	3	1	122	1	0	0	0	0	1	0	0	0	7727	1145	40	4	376	4	IL1F9	2	113742478	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5124034	113742478	129456895	91	113216											
IL1F5	26525	broad.mit.edu	37	chr2	113820090	113820090	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagcttcaccttctacCggcgggacatggggctcacc	11	15	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113820090	A	A	113820090	2	1	122	1	0	0	0	0	0	0	0	1	7723	643	23	1		1	IL1F5	2	113820090	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	77612	113820090	129379283	92	113217											
IL1F10	84639	broad.mit.edu	37	chr2	113832335	113832335	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaacagaggcttggccCgcaccaaggtccccattttc	8	15	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113832335	G	G	113832335	3	3	122	1	0	0	0	0	1	0	0	0	7722	652	23	4	164	4	IL1F10	2	113832335	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	12245	113832335	129367038	93	113218											
DPP10	57628	broad.mit.edu	37	chr2	116520102	116520102	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagttaaatttatatatgctCattttggtctttagatgctt	6	4	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116520102	A	A	116520102	1	1	122	0	1	0	0	0	0	0	0	0	4767	841	29	3		3	DPP10	2	116520102	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2687767	116520102	126679271	94	113219											
GLI2	2736	broad.mit.edu	37	chr2	121741987	121741987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggagaacagggagagcGccccttcagagttgatcctc	12	11	2	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121741987	T	T	121741987	1	4	122	0	1	0	0	0	0	0	0	0	6502	1102	38	3		3	GLI2	2	121741987	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	5221885	121741987	121457386	95	113220											
BIN1	274	broad.mit.edu	37	chr2	127826484	127826484	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagacgctgccccgaccCgcctccagcccttaccttgg	9	20	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127826484	G	G	127826484	1	3	122	0	1	0	0	0	0	0	0	0	1438	667	23	4		4	BIN1	2	127826484	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	6084497	127826484	115372889	96	113221											
POTEF	728378	broad.mit.edu	37	chr2	130872806	130872806	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttatcagagctgtcctcTttttgttgtcaaggacatta	7	9	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130872806	C	C	130872806	3	2	122	1	0	0	0	0	1	0	0	0	12361	1609	56	5	2666	5	POTEF	2	130872806	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	3046322	130872806	112326567	97	113222											
POTEF	728378	broad.mit.edu	37	chr2	130877748	130877748	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaagcgcccaccttgctcTtgctgctccccctgcagcag	8	20	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130877748	A	A	130877748	3	1	122	1	0	0	0	0	1	0	0	0	12361	1609	56	5	2946	5	POTEF	2	130877748	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	4942	130877748	112321625	98	113223											
FAM123C	205147	broad.mit.edu	37	chr2	131519959	131519959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggggcaggcagggccaCggctgccacagggcagctgg	19	12	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131519959	A	A	131519959	3	1	122	1	0	0	0	0	1	0	0	0	5470	536	19	3	316	3	FAM123C	2	131519959	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	642211	131519959	111679414	99	113224											
NCKAP5	344148	broad.mit.edu	37	chr2	133543133	133543134	+	Missense_Mutation	DNP	GG	TT	TT													catttggttatcactgatggGggttcaagtaacacttttcg							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	133543134	TT	TT	133543133	3	4	122	1	0	0	0	0	1	0	0	0	10318	1219	43	2	4506	2	NCKAP5	2	133543133	Missense_Mutation	DNP	GG	TCGA-44-6145-01A-11D-1753-08	2023174	133543133	109656240	100	113225											
LRP1B	53353	broad.mit.edu	37	chr2	141083484	141083484	+	Intron	SNP	T	A	A													cacaagacaaatagtgcaagTaaatttgaaatcattcaaaa							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141083484	A	A	141083484	1	1	122	0	1	0	0	0	0	0	0	0	9042	1653	57	5		5	LRP1B	2	141083484	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	7540351	141083484	102115889	101	113226	496	2									
LRP1B	53353	broad.mit.edu	37	chr2	141083490	141083490	+	Intron	SNP	T	G	G													acaaatagtgcaagtaaattTgaaatcattcaaaatcatac							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141083490	G	G	141083490	1	3	122	0	1	0	0	0	0	0	0	0	9042	1827	63	5		5	LRP1B	2	141083490	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	6	141083490	102115883	102	113227	496	2									
LRP1B	53353	broad.mit.edu	37	chr2	141533673	141533673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgtgatttaccttgctGtgcttctttatcatagactt	7	7	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141533673	T	T	141533673	3	4	122	1	0	0	0	0	1	0	0	0	9042	1386	48	3	8541	3	LRP1B	2	141533673	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	450183	141533673	101665700	103	113228											
ARHGAP15	55843	broad.mit.edu	37	chr2	143973950	143973950	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacatatgcattcttcttgCagatggttgaaaaagaaggt	9	5	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143973950	T	T	143973950	1	4	122	0	1	0	0	0	0	0	0	0	868	725	25	4		4	ARHGAP15	2	143973950	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2440277	143973950	99225423	104	113229											
NEB	4703	broad.mit.edu	37	chr2	152551035	152551035	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtccccaggccacactcaCatcgctggtgttcttggtgt	11	13	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152551035	G	G	152551035	5	3	122	1	0	0	0	0	0	0	1	0	10397	492	17	4	24559	4	NEB	2	152551035	Splice_Site	SNP	C	TCGA-44-6145-01A-11D-1753-08	8577085	152551035	90648338	105	113230											
PRPF40A	55660	broad.mit.edu	37	chr2	153535966	153535966	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgatttgtattccttccaGgggcatttagataagagttg	10	6	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153535966	T	T	153535966	2	4	122	1	0	0	0	0	0	0	0	1	12677	987	35	2		2	PRPF40A	2	153535966	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	984931	153535966	89663407	106	113231											
TBR1	10716	broad.mit.edu	37	chr2	162274296	162274296	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatcactggaggtttcaaGgaggcaaatgggttccttgc	12	9	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162274296	T	T	162274296	4	4	122	1	0	0	0	0	0	1	0	0	15769	1001	35	2	808	2	TBR1	2	162274296	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	8738330	162274296	80925077	107	113232											
CHRNA1	1134	broad.mit.edu	37	chr2	175618297	175618297	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggcaggggatgatgaCgttgacgatgaagtagaggg	19	4	0	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175618297	T	T	175618297	3	4	122	1	0	0	0	0	1	0	0	0	3412	536	19	4	677	4	CHRNA1	2	175618297	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	13344001	175618297	67581076	108	113233											
AGPS	8540	broad.mit.edu	37	chr2	178378692	178378692	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaaatgttttttttaAtcaagggggggaatataatt	9	1	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178378692	G	G	178378692	1	3	122	0	1	0	0	0	0	0	0	0	394	116	4	5		5	AGPS	2	178378692	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	2760395	178378692	64820681	109	113234											
PDE11A	50940	broad.mit.edu	37	chr2	178528660	178528660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcagttcatccttccgGttccgatcaaaaattgccta	8	12	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178528660	T	T	178528660	3	4	122	1	0	0	0	0	1	0	0	0	11725	1252	44	3	229	3	PDE11A	2	178528660	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	149968	178528660	64670713	110	113235											
TTN	7273	broad.mit.edu	37	chr2	179534523	179534523	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcaattataagtcaactAtaagtcaaatgtagtcattg	5	8	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179534523	G	G	179534523	1	3	122	0	1	0	0	0	0	0	0	0	16861	464	16	5		5	TTN	2	179534523	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1005863	179534523	63664850	111	113236											
CERKL	375298	broad.mit.edu	37	chr2	182412572	182412572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgggagatccctgtgccCtcctaaaagaaagaaaacaa	8	9	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182412572	A	A	182412572	3	1	122	1	0	0	0	0	1	0	0	0	3298	681	24	2	482	2	CERKL	2	182412572	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2878049	182412572	60786801	112	113237											
FAM171B	165215	broad.mit.edu	37	chr2	187615876	187615876	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataggttttgaaaacattgAattgactcctcttgctgcaa	7	7	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187615876	T	T	187615876	3	4	122	1	0	0	0	0	1	0	0	0	5536	246	9	5	758	5	FAM171B	2	187615876	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	5203304	187615876	55583497	113	113238											
ZSWIM2	151112	broad.mit.edu	37	chr2	187712478	187712479	+	Missense_Mutation	DNP	CG	TT	TT													ttacaaagttcccctcctttCggaaatgtggaacagttaca							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	187712479	TT	TT	187712478	3	4	122	1	0	0	0	0	1	0	0	0	18370	871	31	4	1723	4	ZSWIM2	2	187712478	Missense_Mutation	DNP	CG	TCGA-44-6145-01A-11D-1753-08	96602	187712478	55486895	114	113239											
CALCRL	10203	broad.mit.edu	37	chr2	188243642	188243642	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaagacatctagtaattttCttaaaatattttaaatttac	2	6	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188243642	A	A	188243642	1	1	122	0	1	0	0	0	0	0	0	0	2606	928	32	3		3	CALCRL	2	188243642	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	531164	188243642	54955731	115	113240											
COL5A2	1290	broad.mit.edu	37	chr2	189943287	189943287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctctcctggcattccCctcggaccctatagacgata	6	17	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189943287	A	A	189943287	3	1	122	1	0	0	0	0	1	0	0	0	3729	622	22	2	3641	2	COL5A2	2	189943287	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1699645	189943287	53256086	116	113241											
SF3B1	23451	broad.mit.edu	37	chr2	198257674	198257674	+	Intron	DEL	A	-	-													aaaaaaaaaaatcaccgattAaaaaaaaaatctttaactta							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	198257674	-	-	198257674	6	5	122	0	1	1	0	1	0	0	0	0	14262	377	13	0		0	SF3B1	2	198257674	Intron	DEL	A	TCGA-44-6145-01A-11D-1753-08	8314387	198257674	44941699	117	113242											
BMPR2	659	broad.mit.edu	37	chr2	203407114	203407114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggatatgcaggttctcGtgtctagggaaaaacagaga	13	5	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203407114	T	T	203407114	3	4	122	1	0	0	0	0	1	0	0	0	1477	1145	40	3	1395	3	BMPR2	2	203407114	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5149440	203407114	39792259	118	113243											
MAP2	4133	broad.mit.edu	37	chr2	210561275	210561275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatccacagatgatgataGgagcatcatgacagaacagt	10	7	1	6			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210561275	T	T	210561275	3	4	122	1	0	0	0	0	1	0	0	0	9327	1000	35	2	4208	2	MAP2	2	210561275	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	7154161	210561275	32638098	119	113244											
SPAG16	79582	broad.mit.edu	37	chr2	214878866	214878866	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attactctcggtcattctttGggtatggaatatgacttaaa	8	6	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214878866	A	A	214878866	1	1	122	0	1	0	0	0	0	0	0	0	15094	1363	47	4		4	SPAG16	2	214878866	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	4317591	214878866	28320507	120	113245											
VIL1	7429	broad.mit.edu	37	chr2	219294032	219294032	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactctggccaaggagatcCgagaccaggagcggggaggg	18	9	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219294032	T	T	219294032	4	4	122	1	0	0	0	0	0	1	0	0	17291	644	23	4	614	4	VIL1	2	219294032	Nonsense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	4415166	219294032	23905341	121	113246											
RQCD1	9125	broad.mit.edu	37	chr2	219457014	219457014	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttataaactcttcgatttTgttttgcttcaggttgccac	6	9	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219457014	C	C	219457014	1	2	122	0	1	0	0	0	0	0	0	0	13781	1827	63	5		5	RQCD1	2	219457014	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	162982	219457014	23742359	122	113247											
CCDC108	255101	broad.mit.edu	37	chr2	219890775	219890775	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagggaatactgggggatgTggtgctcaaagccagcgaaa	15	7	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219890775	A	A	219890775	3	1	122	1	0	0	0	0	1	0	0	0	2769	1696	59	5	3547	5	CCDC108	2	219890775	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	433761	219890775	23308598	123	113248											
CCDC108	255101	broad.mit.edu	37	chr2	219892628	219892628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctcgacaggctctacaCtgatgggcggggggaagatg	15	10	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219892628	A	A	219892628	3	1	122	1	0	0	0	0	1	0	0	0	2769	565	20	3	3914	3	CCDC108	2	219892628	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1853	219892628	23306745	124	113249											
DOCK10	55619	broad.mit.edu	37	chr2	225710297	225710297	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattgatgtcacaggtgacGtgataaaaagaaaacaaaat	9	5	1	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225710297	A	A	225710297	2	1	122	1	0	0	0	0	0	0	0	1	4725	1136	40	4		4	DOCK10	2	225710297	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	5817669	225710297	17489076	125	113250											
GPR55	9290	broad.mit.edu	37	chr2	231774831	231774831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtagcagaaaacatccaGgcagcagttgacgttggaga	13	7	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231774831	T	T	231774831	3	4	122	1	0	0	0	0	1	0	0	0	6764	991	35	2	116	2	GPR55	2	231774831	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	6064534	231774831	11424542	126	113251											
GPR55	9290	broad.mit.edu	37	chr2	231775406	231775406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccagggtgcacagggacGggaagggggactgtacctgg	18	10	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231775406	T	T	231775406	3	4	122	1	0	0	0	0	1	0	0	0	6764	1116	39	1	691	1	GPR55	2	231775406	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	575	231775406	11423967	127	113252											
COL6A3	1293	broad.mit.edu	37	chr2	238274635	238274635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccacaaaaacattctgGtctctagaaccatcaaaccc	6	13	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238274635	T	T	238274635	3	4	122	1	0	0	0	0	1	0	0	0	3733	1252	44	3	4121	3	COL6A3	2	238274635	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	6499229	238274635	4924738	128	113253											
KLHL30	377007	broad.mit.edu	37	chr2	239049495	239049495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctcagcccaagctggccGacgtcacactgctggtgggc	13	15	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239049495	T	T	239049495	3	4	122	1	0	0	0	0	1	0	0	0	8455	1058	37	3	102	3	KLHL30	2	239049495	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	774860	239049495	4149878	129	113254											
PER2	8864	broad.mit.edu	37	chr2	239164624	239164624	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggccacactatattcaCgaacaagacaaatcattcac	4	11	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239164624	A	A	239164624	1	1	122	0	1	0	0	0	0	0	0	0	11824	551	19	3		3	PER2	2	239164624	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	115129	239164624	4034749	130	113255											
HDAC4	9759	broad.mit.edu	37	chr2	240066539	240066539	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactgctgtgttgctgcagGggagagcgcagggagctcac	16	10	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240066539	A	A	240066539	1	1	122	0	1	0	0	0	0	0	0	0	7076	1247	43	4		4	HDAC4	2	240066539	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	901915	240066539	3132834	131	113256											
CAMK1	8536	broad.mit.edu	37	chr3	9802431	9802431	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggcatcattctcgtcataGaagggagggtaaccgcagag	13	8	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9802431	T	T	9802431	3	4	122	1	0	0	0	0	1	0	0	0	2622	933	33	3	478	3	CAMK1	3	9802431	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08		9802431	188219999	132	113257											
FANCD2	2177	broad.mit.edu	37	chr3	10135898	10135898	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaataaaacccttgggctggAtgagactattctgcctcagg	10	9	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10135898	T	T	10135898	1	4	122	0	1	0	0	0	0	0	0	0	5722	348	12	5		5	FANCD2	3	10135898	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	333467	10135898	187886532	133	113258											
HACL1	26061	broad.mit.edu	37	chr3	15613321	15613321	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaaacacataaactttttCtttgccttttttttcttttt	1	9	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15613321	T	T	15613321	1	4	122	0	1	0	0	0	0	0	0	0	7007	928	32	4		4	HACL1	3	15613321	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	5477423	15613321	182409109	134	113259											
LRRC3B	116135	broad.mit.edu	37	chr3	26751340	26751340	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaatctcaaggaaataccTagagatcttcctcctgaaac	6	11	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26751340	G	G	26751340	2	3	122	1	0	0	0	0	0	0	0	1	9083	1509	53	5		5	LRRC3B	3	26751340	Silent	SNP	T	TCGA-44-6145-01A-11D-1753-08	11138019	26751340	171271090	135	113260											
TGM4	7047	broad.mit.edu	37	chr3	44948497	44948497	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgcaaaggtgacatctttAttgtctatgacaccagattc	7	10	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44948497	G	G	44948497	3	3	122	1	0	0	0	0	1	0	0	0	15955	449	16	5	1170	5	TGM4	3	44948497	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	18197157	44948497	153073933	136	113261											
STAB1	23166	broad.mit.edu	37	chr3	52537139	52537139	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccgaggtgagcctggactCagaggccagggacttcagct	15	11	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52537139	G	G	52537139	1	3	122	0	1	0	0	0	0	0	0	0	15355	841	29	4		4	STAB1	3	52537139	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	7588642	52537139	145485291	137	113262											
GNL3	26354	broad.mit.edu	37	chr3	52727190	52727190	+	Intron	DEL	T	-	-													aggacagctcctttgtttggTtttttttttaaggtagtact							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52727190	-	-	52727190	6	5	122	0	1	1	0	1	0	0	0	0	6601	1740	60	0		0	GNL3	3	52727190	Intron	DEL	T	TCGA-44-6145-01A-11D-1753-08	190051	52727190	145295240	138	113263											
FAM19A4	151647	broad.mit.edu	37	chr3	68788090	68788090	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcgcttttcaaaaaggccAaatccgtaaggtagcactgc	9	10	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68788090	T	T	68788090	1	4	122	0	1	0	0	0	0	0	0	0	5581	145	5	5		5	FAM19A4	3	68788090	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	16060900	68788090	129234340	139	113264											
OR5K3	403277	broad.mit.edu	37	chr3	98109906	98109906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaacccactgcagtacCacaccatgatgtccaagaca	6	14	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98109906	A	A	98109906	3	1	122	1	0	0	0	0	1	0	0	0	11262	594	21	2	399	2	OR5K3	3	98109906	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	29321816	98109906	99912524	140	113265											
CSTA	1475	broad.mit.edu	37	chr3	122060140	122060140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatttatgaatacaaagaGtctaagaatggtggactagg	12	3	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122060140	T	T	122060140	1	4	122	0	1	0	0	0	0	0	0	0	4015	1044	36	3		3	CSTA	3	122060140	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	23950234	122060140	75962290	141	113266											
CPNE4	131034	broad.mit.edu	37	chr3	131404802	131404802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcagatttactgaagaaatCctaaaatagataaacgtcaa	6	6	2	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131404802	A	A	131404802	3	1	122	1	0	0	0	0	1	0	0	0	3846	869	30	3	1209	3	CPNE4	3	131404802	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	9344662	131404802	66617628	142	113267											
SLCO2A1	6578	broad.mit.edu	37	chr3	133667639	133667639	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggccctctgctcctactgtCccttaccgcacacaacacca	5	19	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133667639	A	A	133667639	1	1	122	0	1	0	0	0	0	0	0	0	14840	870	30	3		3	SLCO2A1	3	133667639	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2262837	133667639	64354791	143	113268											
P2RY14	9934	broad.mit.edu	37	chr3	150931005	150931005	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagatgatatttatgatgaGggcacatatcttattgattt	9	3	1	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150931005	A	A	150931005	1	1	122	0	1	0	0	0	0	0	0	0	11445	1015	35	4		4	P2RY14	3	150931005	3'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	17263366	150931005	47091425	144	113269											
AADACL2	344752	broad.mit.edu	37	chr3	151474791	151474791	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttcaggtgcagaatgaTgctgaaataaaacataaaat	7	4	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151474791	C	C	151474791	2	2	122	1	0	0	0	0	0	0	0	1	11	1461	51	5		5	AADACL2	3	151474791	Silent	SNP	T	TCGA-44-6145-01A-11D-1753-08	543786	151474791	46547639	145	113270											
GOLIM4	27333	broad.mit.edu	37	chr3	167745634	167745634	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcataggctagcaaaTcaaaggaactaaaatcagcc	6	10	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167745634	A	A	167745634	1	1	122	0	1	0	0	0	0	0	0	0	6630	1450	50	5		5	GOLIM4	3	167745634	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	16270843	167745634	30276796	146	113271											
ABCC5	10057	broad.mit.edu	37	chr3	183689508	183689508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccgcctgatgctcagtgCgctgcagctgcctcaccttc	10	17	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183689508	A	A	183689508	3	1	122	1	0	0	0	0	1	0	0	0	56	768	27	3	2789	3	ABCC5	3	183689508	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	15943874	183689508	14332922	147	113272											
UBXN7	26043	broad.mit.edu	37	chr3	196089416	196089416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacggatatgaactcctcaCtgccagaaaaaagttcagat	7	9	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196089416	A	A	196089416	3	1	122	1	0	0	0	0	1	0	0	0	17044	565	20	3	504	3	UBXN7	3	196089416	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	12399908	196089416	1933014	148	113273											
GBA3	57733	broad.mit.edu	37	chr4	22749245	22749245	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggctcatgccagatccTggcacagctatgattcctta	8	11	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22749245	C	C	22749245	3	2	122	1	0	0	0	0	1	0	0	0	6330	1580	55	5	623	5	GBA3	4	22749245	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08		22749245	168405031	149	113274											
PPARGC1A	10891	broad.mit.edu	37	chr4	23826015	23826015	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttataaaaacaaactgaaatGgagttgctgtagccaaatgt	8	5	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23826015	A	A	23826015	1	1	122	0	1	0	0	0	0	0	0	0	12396	1363	47	4		4	PPARGC1A	4	23826015	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1076770	23826015	167328261	150	113275											
WDR19	57728	broad.mit.edu	37	chr4	39245753	39245753	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatgaggcttccctgaaaaGataaaagtaaaccataacct	6	9	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39245753	C	C	39245753	1	2	122	0	1	0	0	0	0	0	0	0	17406	957	33	4		4	WDR19	4	39245753	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	15419738	39245753	151908523	151	113276											
WDR19	57728	broad.mit.edu	37	chr4	39247011	39247011	+	Frame_Shift_Del	DEL	C	-	-													caaaagttggtgatcttctgCcccacgtttcttctcctaag							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39247011	-	-	39247011	7	5	122	1	0	1	0	1	0	0	0	0	17406	739	26	0	2762	0	WDR19	4	39247011	Frame_Shift_Del	DEL	C	TCGA-44-6145-01A-11D-1753-08	1258	39247011	151907265	152	113277											
ATP8A1	10396	broad.mit.edu	37	chr4	42554575	42554575	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctcgctctggcactgctGtgtgacagactgccatcatt	9	13	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42554575	C	C	42554575	3	2	122	1	0	0	0	0	1	0	0	0	1196	1377	48	4	2112	4	ATP8A1	4	42554575	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	3307564	42554575	148599701	153	113278											
GABRG1	2565	broad.mit.edu	37	chr4	46086071	46086071	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaattactgtgggcctcaCtgcaaaatatcaacaaaaag	6	9	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46086071	A	A	46086071	5	1	122	1	0	0	0	0	0	0	1	0	6231	579	20	3	1172	3	GABRG1	4	46086071	Splice_Site	SNP	C	TCGA-44-6145-01A-11D-1753-08	3531496	46086071	145068205	154	113279											
GABRB1	2560	broad.mit.edu	37	chr4	47163248	47163248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattctttttttttttttGctttctttatttcacaggat	3	5	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47163248	T	T	47163248	1	4	122	0	1	0	0	0	0	0	0	0	6226	1334	46	3		3	GABRB1	4	47163248	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1077177	47163248	143991028	155	113280											
ATP10D	57205	broad.mit.edu	37	chr4	47538623	47538623	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaattttaacatctttGctgcttatccagctatgttc	7	8	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47538623	C	C	47538623	1	2	122	0	1	0	0	0	0	0	0	0	1122	1334	46	4		4	ATP10D	4	47538623	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	375375	47538623	143615653	156	113281											
EXOC1	55763	broad.mit.edu	37	chr4	56756339	56756339	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatccctgctttatactttgGatcatttatttgtgaagatc	6	7	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56756339	A	A	56756339	1	1	122	0	1	0	0	0	0	0	0	0	5343	1189	41	4		4	EXOC1	4	56756339	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	9217716	56756339	134397937	157	113282											
EPHA5	2044	broad.mit.edu	37	chr4	66201737	66201737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttcatcaaacttgggcCtgctatttcgctctttctgc	6	12	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66201737	A	A	66201737	3	1	122	1	0	0	0	0	1	0	0	0	5212	681	24	2	360	2	EPHA5	4	66201737	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	9445398	66201737	124952539	158	113283											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68919562	68919562	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaagtaaatgaatttaaAcaatacaaaatacgcaggag	6	6	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68919562	G	G	68919562	1	3	122	0	1	0	0	0	0	0	0	0	16366	58	2	5		5	TMPRSS11F	4	68919562	3'UTR	SNP	A	TCGA-44-6145-01A-11D-1753-08	2717825	68919562	122234714	159	113284											
UGT2B7	7364	broad.mit.edu	37	chr4	69962328	69962328	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaggtgctggtgtgggcAgcagaatacagccattggat	16	6	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69962328	T	T	69962328	2	4	122	1	0	0	0	0	0	0	0	1	17088	175	7	5		5	UGT2B7	4	69962328	Silent	SNP	A	TCGA-44-6145-01A-11D-1753-08	1042766	69962328	121191948	160	113285											
NKX6-1	4825	broad.mit.edu	37	chr4	85414744	85414744	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaggggaggcaagggcgaGgaattaaacgagcagatcca	17	6	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85414744	C	C	85414744	1	2	122	0	1	0	0	0	0	0	0	0	10552	1015	35	4		4	NKX6-1	4	85414744	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	15452416	85414744	105739532	161	113286											
UNC5C	8633	broad.mit.edu	37	chr4	96141060	96141060	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttacattctagctgaatgaGatgactctaaagtcattgat	7	7	3	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96141060	C	C	96141060	1	2	122	0	1	0	0	0	0	0	0	0	17119	957	33	4		4	UNC5C	4	96141060	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	10726316	96141060	95013216	162	113287											
ADH1A	124	broad.mit.edu	37	chr4	100234943	100234943	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgcatcttccaggttgcaGaggcagaaatctcagggcat	11	9	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100234943	C	C	100234943	1	2	122	0	1	0	0	0	0	0	0	0	307	957	33	4		4	ADH1A	4	100234943	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	4093883	100234943	90919333	163	113288											
ANK2	287	broad.mit.edu	37	chr4	114204091	114204091	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtaaacaggaaccaatcGcagacagtttggaacaaaaa	8	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114204091	A	A	114204091	1	1	122	0	1	0	0	0	0	0	0	0	621	1102	38	4		4	ANK2	4	114204091	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	13969148	114204091	76950185	164	113289											
QRFPR	84109	broad.mit.edu	37	chr4	122290735	122290735	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	attcggttggcctgggcacgGatcagttccattggagaggg	16	8	1	1	rs143638179	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122290735	C	C	122290735	1	2	122	0	1	0	0	0	0	0	0	0	12986	1189	41	4		4	QRFPR	4	122290735	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	8086644	122290735	68863541	165	113290											
ELF2	1998	broad.mit.edu	37	chr4	139980359	139980359	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgataactcgaggaggagtCtggccagatgcctgctgagt	14	9	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139980359	A	A	139980359	3	1	122	1	0	0	0	0	1	0	0	0	5096	912	32	3	225	3	ELF2	4	139980359	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	17689624	139980359	51173917	166	113291											
DCHS2	54798	broad.mit.edu	37	chr4	155226379	155226379	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaaactgaagcttggaattGactccttaagaaaaatataa	6	6	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155226379	T	T	155226379	2	4	122	1	0	0	0	0	0	0	0	1	4321	1277	45	3		3	DCHS2	4	155226379	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	15246020	155226379	35927897	167	113292											
RXFP1	59350	broad.mit.edu	37	chr4	159568062	159568062	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactcattgtcagcttgtaGgatctttggccattctgtcc	9	10	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159568062	A	A	159568062	3	1	122	1	0	0	0	0	1	0	0	0	13870	1001	35	4	1527	4	RXFP1	4	159568062	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	4341683	159568062	31586214	168	113293											
AGA	175	broad.mit.edu	37	chr4	178358513	178358513	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaagagctacaggaagatAattaactaaactttatccat	8	6	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178358513	G	G	178358513	1	3	122	0	1	0	0	0	0	0	0	0	365	377	13	5		5	AGA	4	178358513	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	18790451	178358513	12795763	169	113294											
CCDC110	256309	broad.mit.edu	37	chr4	186392061	186392061	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagatgctgccgcctgtgTatagttaaaggagcctttta	11	9	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186392061	C	C	186392061	1	2	122	0	1	0	0	0	0	0	0	0	2773	1653	57	5		5	CCDC110	4	186392061	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	8033548	186392061	4762215	170	113295											
FRG1	2483	broad.mit.edu	37	chr4	190883020	190883020	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accacaaacttaaaataagtAaagaagacagtaaaattctt	4	6	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190883020	G	G	190883020	3	3	122	1	0	0	0	0	1	0	0	0	6106	363	13	5	703	5	FRG1	4	190883020	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	4490959	190883020	271256	171	113296											
TRIP13	9319	broad.mit.edu	37	chr5	908506	908506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcccgaaatgcctgcaggGcgggcaccgagccatcagat	13	15	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	908506	T	T	908506	3	4	122	1	0	0	0	0	1	0	0	0	16682	1203	42	3	830	3	TRIP13	5	908506	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08		908506	180006754	172	113297											
CTNND2	1501	broad.mit.edu	37	chr5	11364898	11364898	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagggggcttctgatagaCgcggtcttcatagatgggat	14	7	3	3	rs148824970	byFrequency	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11364898	T	T	11364898	3	4	122	1	0	0	0	0	1	0	0	0	4054	536	19	4	2455	4	CTNND2	5	11364898	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	10456392	11364898	169550362	173	113298											
DNAH5	1767	broad.mit.edu	37	chr5	13786382	13786382	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaggaacatattcagaCgctcttttaggtgactaaaa	9	8	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13786382	A	A	13786382	3	1	122	1	0	0	0	0	1	0	0	0	4644	536	19	3	5260	3	DNAH5	5	13786382	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2421484	13786382	167128878	174	113299											
CDH18	1016	broad.mit.edu	37	chr5	19483749	19483749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggataaaatggggatgtGtatctttcttgtttcagttt	10	3	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19483749	T	T	19483749	1	4	122	0	1	0	0	0	0	0	0	0	3133	1392	48	3		3	CDH18	5	19483749	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	5697367	19483749	161431511	175	113300											
CDH12	1010	broad.mit.edu	37	chr5	21883399	21883400	+	Intron	DNP	GG	TT	TT													actttattaatacatcaaaaGgtcagaaatgtgaattccag							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21883400	TT	TT	21883399	1	4	122	0	1	0	0	0	0	0	0	0	3128	1015	35	2		2	CDH12	5	21883399	Intron	DNP	GG	TCGA-44-6145-01A-11D-1753-08	2399650	21883399	159031861	176	113301											
CDH10	1008	broad.mit.edu	37	chr5	24509704	24509704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaatagaatctgggtcCcttgccattacagtaccaat	8	10	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24509704	A	A	24509704	3	1	122	1	0	0	0	0	1	0	0	0	3126	622	22	2	1163	2	CDH10	5	24509704	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2626305	24509704	156405556	177	113302											
CDH10	1008	broad.mit.edu	37	chr5	24537382	24537382	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaataaatatgtactcatgGtagcaaatcaaagaggattt	7	4	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24537382	A	A	24537382	1	1	122	0	1	0	0	0	0	0	0	0	3126	1276	44	4		4	CDH10	5	24537382	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	27678	24537382	156377878	178	113303											
CDH9	1007	broad.mit.edu	37	chr5	26902602	26902602	+	Frame_Shift_Del	DEL	G	-	-													tactttattaaattgttcctGgcatctggatcgtatgctgt							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26902602	-	-	26902602	7	5	122	1	0	1	0	1	0	0	0	0	3147	1335	47	0	1157	0	CDH9	5	26902602	Frame_Shift_Del	DEL	G	TCGA-44-6145-01A-11D-1753-08	2365220	26902602	154012658	179	113304											
CDH6	1004	broad.mit.edu	37	chr5	31294067	31294067	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taattttttttttctacactAgttacattcagaccaggata	4	7	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31294067	T	T	31294067	5	4	122	1	0	0	0	0	0	0	1	0	3144	434	15	5	233	5	CDH6	5	31294067	Splice_Site	SNP	A	TCGA-44-6145-01A-11D-1753-08	4391465	31294067	149621193	180	113305											
SPEF2	79925	broad.mit.edu	37	chr5	35753776	35753776	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcccggaaggaagaggcGgagcaggagcggcttgacat	18	8	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35753776	T	T	35753776	2	4	122	1	0	0	0	0	0	0	0	1	15153	1103	39	1		1	SPEF2	5	35753776	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	4459709	35753776	145161484	181	113306											
NIPBL	25836	broad.mit.edu	37	chr5	37016102	37016102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgactgacatgtgtcacCtaaattgacatccttttcat	6	9	2	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37016102	A	A	37016102	1	1	122	0	1	0	0	0	0	0	0	0	10523	696	24	2		2	NIPBL	5	37016102	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1262326	37016102	143899158	182	113307											
EGFLAM	133584	broad.mit.edu	37	chr5	38370347	38370347	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atagccagctagcttcccttCcctctggtatttctgaacta	6	13	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38370347	A	A	38370347	1	1	122	0	1	0	0	0	0	0	0	0	5006	870	30	3		3	EGFLAM	5	38370347	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1354245	38370347	142544913	183	113308											
HEATR7B2	133558	broad.mit.edu	37	chr5	41057330	41057330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaacacagaaaaccggTtgaaattaaaaattggagtt	8	4	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41057330	A	A	41057330	1	1	122	0	1	0	0	0	0	0	0	0	7102	1740	60	5		5	HEATR7B2	5	41057330	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	2686983	41057330	139857930	184	113309											
SNX18	112574	broad.mit.edu	37	chr5	53815085	53815085	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgacggcttcaagtgcttcAccaagaagatggacgacagc	11	11	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53815085	T	T	53815085	3	4	122	1	0	0	0	0	1	0	0	0	15003	159	6	5	1305	5	SNX18	5	53815085	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	12757755	53815085	127100175	185	113310											
IL31RA	133396	broad.mit.edu	37	chr5	55168177	55168177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcgtgctcttttttccttCcaagaataacgatcccagat	5	12	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55168177	A	A	55168177	3	1	122	1	0	0	0	0	1	0	0	0	7761	855	30	3	366	3	IL31RA	5	55168177	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1353092	55168177	125747083	186	113311											
RNF180	285671	broad.mit.edu	37	chr5	63510426	63510426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctaactttcaacatctGtataataaaaacttggtttt	6	6	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63510426	T	T	63510426	1	4	122	0	1	0	0	0	0	0	0	0	13575	1392	48	3		3	RNF180	5	63510426	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	8342249	63510426	117404834	187	113312											
MRPS27	23107	broad.mit.edu	37	chr5	71616172	71616172	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgctctcgacgacaggacCgacgctccgcctcctcgccc	10	20	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71616172	A	A	71616172	1	1	122	0	1	0	0	0	0	0	0	0	9932	667	23	1		1	MRPS27	5	71616172	5'Flank	SNP	C	TCGA-44-6145-01A-11D-1753-08	8105746	71616172	109299088	188	113313											
FER	2241	broad.mit.edu	37	chr5	108295116	108295116	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagttaacatttccaacAgtaaataaaattcttaggtt	7	5	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108295116	G	G	108295116	1	3	122	0	1	0	0	0	0	0	0	0	5870	203	7	5		5	FER	5	108295116	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	36678944	108295116	72620144	189	113314											
REEP5	7905	broad.mit.edu	37	chr5	112214482	112214482	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagtttccatccagtctggTttaggtgctcttcttttctt	8	9	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112214482	A	A	112214482	1	1	122	0	1	0	0	0	0	0	0	0	13316	1740	60	5		5	REEP5	5	112214482	3'UTR	SNP	T	TCGA-44-6145-01A-11D-1753-08	3919366	112214482	68700778	190	113315											
DMXL1	1657	broad.mit.edu	37	chr5	118479669	118479669	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtatattaaaaaaaagtttAtgaaagcattttgcataaaa	6	2	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118479669	G	G	118479669	1	3	122	0	1	0	0	0	0	0	0	0	4634	464	16	5		5	DMXL1	5	118479669	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	6265187	118479669	62435591	191	113316											
FTMT	94033	broad.mit.edu	37	chr5	121187725	121187725	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgtctctgcgcccggtgCgctgctgcttcgcgctcccg	14	17	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121187725	T	T	121187725	3	4	122	1	0	0	0	0	1	0	0	0	6145	768	27	4	69	4	FTMT	5	121187725	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2708056	121187725	59727535	192	113317											
FBN2	2201	broad.mit.edu	37	chr5	127648633	127648633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaagtaccaagcaatctcCtgcttttcagctttttcgag	6	11	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127648633	A	A	127648633	1	1	122	0	1	0	0	0	0	0	0	0	5760	696	24	2		2	FBN2	5	127648633	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	6460908	127648633	53266627	193	113318											
ACSL6	23305	broad.mit.edu	37	chr5	131323942	131323942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggggccatcaaggagaGtcaggccatgtgggcccagg	18	10	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131323942	T	T	131323942	1	4	122	0	1	0	0	0	0	0	0	0	181	1044	36	3		3	ACSL6	5	131323942	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	3675309	131323942	49591318	194	113319											
SAR1B	51128	broad.mit.edu	37	chr5	133948372	133948372	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaatcttaccttgaacatgtc							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133948372	-	-	133948372	6	5	122	0	1	1	0	1	0	0	0	0	13952	957	33	0		0	SAR1B	5	133948372	Intron	DEL	G	TCGA-44-6145-01A-11D-1753-08	2624430	133948372	46966888	195	113320											
SLC23A1	9963	broad.mit.edu	37	chr5	138713677	138713677	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcacctgtattgatggcGccagggttggactccaggta	15	9	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138713677	T	T	138713677	2	4	122	1	0	0	0	0	0	0	0	1	14576	1074	38	3		3	SLC23A1	5	138713677	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	4765305	138713677	42201583	196	113321											
UBE2D2	7322	broad.mit.edu	37	chr5	138994325	138994325	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatttttcttgacaattcAtttcccaacagattacccct	3	11	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138994325	G	G	138994325	3	3	122	1	0	0	0	0	1	0	0	0	16975	217	8	5	178	5	UBE2D2	5	138994325	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	280648	138994325	41920935	197	113322											
HARS2	23438	broad.mit.edu	37	chr5	140073645	140073645	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatttgagctgaaggtaagGggagaagaaagagtacgtgc	16	4	0	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140073645	A	A	140073645	1	1	122	0	1	0	0	0	0	0	0	0	7026	1247	43	4		4	HARS2	5	140073645	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1079320	140073645	40841615	198	113323											
PCDHGA6	56109	broad.mit.edu	37	chr5	140753949	140753949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctctgtgctcagagccCgcggtgtctggtgagtttta	15	9	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140753949	A	A	140753949	3	1	122	1	0	0	0	0	1	0	0	0	11652	652	23	1	301	1	PCDHGA6	5	140753949	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	680304	140753949	40161311	199	113324											
GLRA1	2741	broad.mit.edu	37	chr5	151229879	151229879	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgaaagaatcagcatggGagatcatttctgggtgggct	14	6	3	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151229879	A	A	151229879	1	1	122	0	1	0	0	0	0	0	0	0	6518	1189	41	4		4	GLRA1	5	151229879	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	10475930	151229879	29685381	200	113325											
ITK	3702	broad.mit.edu	37	chr5	156641181	156641181	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctggaaataactcttctGttggtgccaacctgtttcag	9	10	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156641181	A	A	156641181	1	1	122	0	1	0	0	0	0	0	0	0	7979	1392	48	4		4	ITK	5	156641181	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	5411302	156641181	24274079	201	113326											
ITK	3702	broad.mit.edu	37	chr5	156650042	156650042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtaagtcatctttgtggCtgctgtccccgtgtttgagg	14	8	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156650042	A	A	156650042	1	1	122	0	1	0	0	0	0	0	0	0	7979	812	28	3		3	ITK	5	156650042	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	8861	156650042	24265218	202	113327											
C5orf25	375484	broad.mit.edu	37	chr5	175716732	175716732	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgtgattgacctgacaAgagctgagggagaaaataga	13	4	0	7			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175716732	G	G	175716732	3	3	122	1	0	0	0	0	1	0	0	0	2311	87	3	5		5	C5orf25	5	175716732	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	19066690	175716732	5198528	203	113328											
GPRIN1	114787	broad.mit.edu	37	chr5	176026691	176026691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggcttgccttttgctGggaggggcagtaatccctca	14	10	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176026691	T	T	176026691	3	4	122	1	0	0	0	0	1	0	0	0	6795	1357	47	2	2885	2	GPRIN1	5	176026691	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	309959	176026691	4888569	204	113329											
DBN1	1627	broad.mit.edu	37	chr5	176887645	176887645	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgcccccagctctcacCtccacctccgactctgactt	6	20	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176887645	T	T	176887645	2	4	122	1	0	0	0	0	0	0	0	1	4285	695	24	4		4	DBN1	5	176887645	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	860954	176887645	4027615	205	113330											
DUSP22	56940	broad.mit.edu	37	chr6	348145	348145	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacactggtgatcgcataCatcatgaccgtcactgactt	9	11	2	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348145	T	T	348145	2	4	122	1	0	0	0	0	0	0	0	1	4861	489	17	4		4	DUSP22	6	348145	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08		348145	170766922	206	113331											
TBC1D7	51256	broad.mit.edu	37	chr6	13316797	13316797	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccaaaaaaaaaaaaaagcCctcaccaactggggcaagga	8	10	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13316797	G	G	13316797	1	3	122	0	1	0	0	0	0	0	0	0	15746	638	22	4		4	TBC1D7	6	13316797	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	12968652	13316797	157798270	207	113332											
COL11A2	1302	broad.mit.edu	37	chr6	33140770	33140770	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggggcaggggcgtgtgaccGagagaagaggggcagacaga	21	7	0	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33140770	A	A	33140770	1	1	122	0	1	0	0	0	0	0	0	0	3700	1073	37	4		4	COL11A2	6	33140770	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	19823973	33140770	137974297	208	113333											
DAXX	1616	broad.mit.edu	37	chr6	33287401	33287401	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaatctctagctcaaagaGctgagacacagggctttctt	8	10	4	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33287401	A	A	33287401	3	1	122	1	0	0	0	0	1	0	0	0	4276	971	34	4	538	4	DAXX	6	33287401	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	146631	33287401	137827666	209	113334											
PNPLA1	285848	broad.mit.edu	37	chr6	36274107	36274107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaaaaccaaaaagcgccGtgcctctggttcatgtgaag	9	11	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36274107	T	T	36274107	3	4	122	1	0	0	0	0	1	0	0	0	12259	1145	40	3	1476	3	PNPLA1	6	36274107	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2986706	36274107	134840960	210	113335											
MDGA1	266727	broad.mit.edu	37	chr6	37626302	37626302	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctcccatactttttcacAagcgcacgtggggcacacgc	8	14	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37626302	G	G	37626302	1	3	122	0	1	0	0	0	0	0	0	0	9499	145	5	5		5	MDGA1	6	37626302	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1352195	37626302	133488765	211	113336											
XPO5	57510	broad.mit.edu	37	chr6	43538667	43538667	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccactctcgcttgatcattTccactacaattcgagacaga	6	13	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43538667	A	A	43538667	3	1	122	1	0	0	0	0	1	0	0	0	17574	1783	62	5	3365	5	XPO5	6	43538667	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	5912365	43538667	127576400	212	113337											
GPR115	221393	broad.mit.edu	37	chr6	47684905	47684905	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatcttgttacttgccagtCactatgctaagtcctctgat	6	10	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47684905	A	A	47684905	1	1	122	0	1	0	0	0	0	0	0	0	6697	841	29	3		3	GPR115	6	47684905	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	4146238	47684905	123430162	213	113338											
RHAG	6005	broad.mit.edu	37	chr6	49586929	49586929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttctgtccctggctttGcaggattccctgtacaatag	8	10	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49586929	T	T	49586929	3	4	122	1	0	0	0	0	1	0	0	0	13424	1328	46	3	961	3	RHAG	6	49586929	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1902024	49586929	121528138	214	113339											
ELOVL5	60481	broad.mit.edu	37	chr6	53133856	53133856	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagcagctgttaacgagCattggggcacaactcatatt	9	9	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53133856	A	A	53133856	1	1	122	0	1	0	0	0	0	0	0	0	5119	725	25	3		3	ELOVL5	6	53133856	3'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	3546927	53133856	117981211	215	113340											
C6orf142	90523	broad.mit.edu	37	chr6	54025128	54025128	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctactccagttgtatgactAgaagcctcatataagaacta	6	9	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54025128	G	G	54025128	1	3	122	0	1	0	0	0	0	0	0	0	2356	435	15	5		5	C6orf142	6	54025128	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	891272	54025128	117089939	216	113341											
DST	667	broad.mit.edu	37	chr6	56342390	56342390	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaacaaataaacaaaaactTcaattggtttattcacagtg	4	6	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56342390	A	A	56342390	1	1	122	0	1	0	0	0	0	0	0	0	4823	1798	62	5		5	DST	6	56342390	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	2317262	56342390	114772677	217	113342											
BAI3	577	broad.mit.edu	37	chr6	69666012	69666012	+	Frame_Shift_Del	DEL	C	-	-													ccggcagtgcactgcagctgCccatggaggctccgaatgca							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69666012	-	-	69666012	7	5	122	1	0	1	0	1	0	0	0	0	1305	739	26	0	1310	0	BAI3	6	69666012	Frame_Shift_Del	DEL	C	TCGA-44-6145-01A-11D-1753-08	13323622	69666012	101449055	218	113343											
C6orf221	154288	broad.mit.edu	37	chr6	74073549	74073549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtgacccagcggtttcGcgaggatgcccgggacccag	16	13	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74073549	T	T	74073549	3	4	122	1	0	0	0	0	1	0	0	0	2378	1087	38	3	630	3	C6orf221	6	74073549	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	4407537	74073549	97041518	219	113344											
ZNF292	23036	broad.mit.edu	37	chr6	87967002	87967002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccaaatataacttctcagGataaaaatgaacaaggtggt	7	6	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87967002	T	T	87967002	3	4	122	1	0	0	0	0	1	0	0	0	17952	1174	41	3	3685	3	ZNF292	6	87967002	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	13893453	87967002	83148065	220	113345											
GRIK2	2898	broad.mit.edu	37	chr6	102503141	102503141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgccctcctctcatcttGctaacctttaattatgaaat	3	13	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102503141	T	T	102503141	1	4	122	0	1	0	0	0	0	0	0	0	6840	1334	46	3		3	GRIK2	6	102503141	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	14536139	102503141	68611926	221	113346											
AKD1	221264	broad.mit.edu	37	chr6	109814724	109814726	+	In_Frame_Del	DEL	TCT	-	-													actctccataaactgctccaTcttcttcttatacttttttc							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109814726	-	-	109814724	7	5	122	1	0	1	0	1	0	0	0	0	460	1435	50	0	155	0	AKD1	6	109814724	In_Frame_Del	DEL	TCT	TCGA-44-6145-01A-11D-1753-08	7311583	109814724	61300343	222	113347											
FAM26E	254228	broad.mit.edu	37	chr6	116836661	116836661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttcaaatgaggtatgtcAaagactgtggtaataattta	9	3	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116836661	G	G	116836661	1	3	122	0	1	0	0	0	0	0	0	0	5601	145	5	5		5	FAM26E	6	116836661	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	7021937	116836661	54278406	223	113348											
EPB41L2	2037	broad.mit.edu	37	chr6	131191341	131191341	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacggaaacccaaattaaccGatggcagattcatgtcatgg	9	9	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131191341	A	A	131191341	1	1	122	0	1	0	0	0	0	0	0	0	5195	1073	37	4		4	EPB41L2	6	131191341	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	14354680	131191341	39923726	224	113349											
BCLAF1	9774	broad.mit.edu	37	chr6	136597526	136597526	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactgaagtaatctagagcTtcctgatcttcccattctcc	5	13	4	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136597526	C	C	136597526	2	2	122	1	0	0	0	0	0	0	0	1	1388	1606	56	5		5	BCLAF1	6	136597526	Silent	SNP	T	TCGA-44-6145-01A-11D-1753-08	5406185	136597526	34517541	225	113350											
IQCE	23288	broad.mit.edu	37	chr7	2641191	2641191	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagatgtgttgattccttttCtttttttttcgagatggaat	8	4	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2641191	T	T	2641191	1	4	122	0	1	0	0	0	0	0	0	0	7876	928	32	4		4	IQCE	7	2641191	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08		2641191	156497472	226	113351											
MEOX2	4223	broad.mit.edu	37	chr7	15652242	15652242	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaccagactttcaccttcaAccaagaaagggaacaaacaa	6	11	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15652242	G	G	15652242	1	3	122	0	1	0	0	0	0	0	0	0	9567	58	2	5		5	MEOX2	7	15652242	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	13011051	15652242	143486421	227	113352											
ABCB5	340273	broad.mit.edu	37	chr7	20739552	20739552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcagttatttcatgcaGgtaagcttttaataaacaag	7	5	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20739552	T	T	20739552	3	4	122	1	0	0	0	0	1	0	0	0	44	1014	35	2	2366	2	ABCB5	7	20739552	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5087310	20739552	138399111	228	113353											
HOXA1	3198	broad.mit.edu	37	chr7	27135409	27135409	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaactgttggcgctgacCgcgcacgactggaaagttgt	13	12	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27135409	A	A	27135409	2	1	122	1	0	0	0	0	0	0	0	1	7355	639	23	1		1	HOXA1	7	27135409	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	6395857	27135409	132003254	229	113354											
CREB5	9586	broad.mit.edu	37	chr7	28763753	28763753	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttcaaagaaatactaaacGatccattggacagaaaagtg	7	7	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28763753	T	T	28763753	1	4	122	0	1	0	0	0	0	0	0	0	3892	1073	37	3		3	CREB5	7	28763753	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1628344	28763753	130374910	230	113355											
PKD1L1	168507	broad.mit.edu	37	chr7	47913441	47913441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacttgggggagagccaaCtctggaagaaatacaaataa	10	7	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47913441	A	A	47913441	1	1	122	0	1	0	0	0	0	0	0	0	12059	580	20	3		3	PKD1L1	7	47913441	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	19149688	47913441	111225222	231	113356											
PSPH	5723	broad.mit.edu	37	chr7	56087349	56087349	+	Missense_Mutation	SNP	C	A	A													atgagtctctgcacctgctcCctggagggctggatgagggc							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56087349	A	A	56087349	3	1	122	1	0	0	0	0	1	0	0	0	12823	622	22	2	474	2	PSPH	7	56087349	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	8173908	56087349	103051314	232	113357	497	2									
PSPH	5723	broad.mit.edu	37	chr7	56087351	56087351	+	Missense_Mutation	SNP	T	A	A													gagtctctgcacctgctcccTggagggctggatgagggcta							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56087351	A	A	56087351	3	1	122	1	0	0	0	0	1	0	0	0	12823	1579	55	5	476	5	PSPH	7	56087351	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	2	56087351	103051312	233	113358	497	2									
ZNF479	90827	broad.mit.edu	37	chr7	57188426	57188426	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctctccagtatgaattatTttatgtgtagtatggtttga	8	4	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57188426	A	A	57188426	3	1	122	1	0	0	0	0	1	0	0	0	18060	1838	64	5	882	5	ZNF479	7	57188426	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	1101075	57188426	101950237	234	113359											
CACNA2D1	781	broad.mit.edu	37	chr7	81599132	81599132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtgatttggggggagagCagatagtagcagtaatttat	15	2	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81599132	A	A	81599132	1	1	122	0	1	0	0	0	0	0	0	0	2574	725	25	3		3	CACNA2D1	7	81599132	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	24410706	81599132	77539531	235	113360											
PCLO	27445	broad.mit.edu	37	chr7	82583854	82583854	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattcatcctcaatttcttCtgttgaaaaatgttgggtta	6	6	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82583854	G	G	82583854	3	3	122	1	0	0	0	0	1	0	0	0	11677	922	32	4	9114	4	PCLO	7	82583854	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	984722	82583854	76554809	236	113361											
SEMA3A	10371	broad.mit.edu	37	chr7	83636733	83636733	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgatagttgggtccatccCtgtgggcatatggaccaagg	13	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83636733	T	T	83636733	3	4	122	1	0	0	0	0	1	0	0	0	14137	681	24	4	1271	4	SEMA3A	7	83636733	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1052879	83636733	75501930	237	113362											
STEAP4	79689	broad.mit.edu	37	chr7	87912579	87912579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaccatgccaaatgatgaCgtaaaacagtgaaccgattt	8	9	0	3	rs112845673	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87912579	A	A	87912579	1	1	122	0	1	0	0	0	0	0	0	0	15398	551	19	3		3	STEAP4	7	87912579	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	4275846	87912579	71226084	238	113363											
MGC26647	219557	broad.mit.edu	37	chr7	88424136	88424136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggaatttctttaggtGtagtcgttgtttctcttctt	9	5	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88424136	T	T	88424136	3	4	122	1	0	0	0	0	1	0	0	0	9643	1377	48	3	644	3	MGC26647	7	88424136	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	511557	88424136	70714527	239	113364											
CDK14	5218	broad.mit.edu	37	chr7	90355768	90355768	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttttagaatgtgggctttTtgggtatttcctgaaactga	11	5	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90355768	C	C	90355768	1	2	122	0	1	0	0	0	0	0	0	0	3160	1856	64	5		5	CDK14	7	90355768	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	1931632	90355768	68782895	240	113365											
AKAP9	10142	broad.mit.edu	37	chr7	91712731	91712731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattcttgttaaaaatgcagGaatacaaattaatttacaga	5	4	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91712731	T	T	91712731	3	4	122	1	0	0	0	0	1	0	0	0	459	1174	41	3	8538	3	AKAP9	7	91712731	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1356963	91712731	67425932	241	113366											
SAMD9	54809	broad.mit.edu	37	chr7	92733294	92733294	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcatatttatcccttttgAcaaaaggtgaagaataactt	5	6	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92733294	T	T	92733294	3	4	122	1	0	0	0	0	1	0	0	0	13937	275	10	5	2656	5	SAMD9	7	92733294	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	1020563	92733294	66405369	242	113367											
COL1A2	1278	broad.mit.edu	37	chr7	94057003	94057003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtggtggttatgactttgGttacgatggagacttctaca	13	6	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94057003	T	T	94057003	3	4	122	1	0	0	0	0	1	0	0	0	3710	1261	44	3	3526	3	COL1A2	7	94057003	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1323709	94057003	65081660	243	113368											
TAC1	6863	broad.mit.edu	37	chr7	97362026	97362026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaattactggtccgactgGtacgacagcgaccagatcaa	10	11	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97362026	T	T	97362026	3	4	122	1	0	0	0	0	1	0	0	0	15617	1270	44	3	104	3	TAC1	7	97362026	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	3305023	97362026	61776637	244	113369											
TECPR1	25851	broad.mit.edu	37	chr7	97852406	97852406	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccctcggcacccgggctctCcgggatgatggacacgtccc	12	18	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852406	A	A	97852406	4	1	122	1	0	0	0	0	0	1	0	0	15865	864	30	3	697	3	TECPR1	7	97852406	Nonsense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	490380	97852406	61286257	245	113370											
TRRAP	8295	broad.mit.edu	37	chr7	98602082	98602082	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaactaacccacggcgcccAtggacatggagccccatggg	13	14	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98602082	G	G	98602082	1	3	122	0	1	0	0	0	0	0	0	0	16726	232	8	5		5	TRRAP	7	98602082	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	749676	98602082	60536581	246	113371											
ZNF789	285989	broad.mit.edu	37	chr7	99074071	99074071	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgcaaaagaccaggccGtggaagccatgttcccacca	9	15	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99074071	T	T	99074071	1	4	122	0	1	0	0	0	0	0	0	0	18289	1160	40	3		3	ZNF789	7	99074071	5'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	471989	99074071	60064592	247	113372											
SRRT	51593	broad.mit.edu	37	chr7	100483442	100483442	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgttaatggccaacaccaActccctcgcttgactatgct	6	14	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100483442	G	G	100483442	1	3	122	0	1	0	0	0	0	0	0	0	15290	58	2	5		5	SRRT	7	100483442	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1409371	100483442	58655221	248	113373											
SERPINE1	5054	broad.mit.edu	37	chr7	100774963	100774963	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcatggtggcaggcgccTgtaatcccagctattcggga	14	11	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100774963	C	C	100774963	1	2	122	0	1	0	0	0	0	0	0	0	14224	1595	55	5		5	SERPINE1	7	100774963	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	291521	100774963	58363700	249	113374											
EMID2	136227	broad.mit.edu	37	chr7	101090977	101090977	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgttagttacaggactctGatcagacccacctacagagt	9	10	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101090977	A	A	101090977	2	1	122	1	0	0	0	0	0	0	0	1	5134	1277	45	4		4	EMID2	7	101090977	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	316014	101090977	58047686	250	113375											
FBXL13	222235	broad.mit.edu	37	chr7	102667916	102667916	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctcatcttctttcttttTactcttatgtcttgctgtat	4	10	6	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102667916	C	C	102667916	3	2	122	1	0	0	0	0	1	0	0	0	5766	1763	61	5	1964	5	FBXL13	7	102667916	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	1576939	102667916	56470747	251	113376											
DUS4L	11062	broad.mit.edu	37	chr7	107215863	107215863	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctatcctaaataaattggTagctggtgtatggaaatgtt	9	4	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107215863	A	A	107215863	1	1	122	0	1	0	0	0	0	0	0	0	4848	1653	57	5		5	DUS4L	7	107215863	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	4547947	107215863	51922800	252	113377											
SLC26A3	1811	broad.mit.edu	37	chr7	107427872	107427872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatttatttctttaacaatgGatacaaccaaaaggacaatc	5	7	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107427872	T	T	107427872	3	4	122	1	0	0	0	0	1	0	0	0	14632	1174	41	3	1536	3	SLC26A3	7	107427872	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	212009	107427872	51710791	253	113378											
NRCAM	4897	broad.mit.edu	37	chr7	107871486	107871486	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacttacaattatccatcCaaaatattataggtggtggt	6	6	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107871486	T	T	107871486	4	4	122	1	0	0	0	0	0	1	0	0	10739	595	21	4	3509	4	NRCAM	7	107871486	Nonsense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	443614	107871486	51267177	254	113379											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518073	113518073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatccttcattttcatgcCttgcttcttccatattctca	2	13	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113518073	A	A	113518073	3	1	122	1	0	0	0	0	1	0	0	0	12472	681	24	2	298	2	PPP1R3A	7	113518073	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	5646587	113518073	45620590	255	113380											
PTPRZ1	5803	broad.mit.edu	37	chr7	121623626	121623626	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcagttttgattaaatacAtaacaaagcatgtgtctctg	6	7	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121623626	T	T	121623626	1	4	122	0	1	0	0	0	0	0	0	0	12922	232	8	5		5	PTPRZ1	7	121623626	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	8105553	121623626	37515037	256	113381											
PTPRZ1	5803	broad.mit.edu	37	chr7	121674320	121674320	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgttaaaatgatttacAtataattttttacaggaagt	7	2	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121674320	T	T	121674320	1	4	122	0	1	0	0	0	0	0	0	0	12922	232	8	5		5	PTPRZ1	7	121674320	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	50694	121674320	37464343	257	113382											
WASL	8976	broad.mit.edu	37	chr7	123349179	123349179	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaaaaaataagatctctgTggattgtccttaacaagaca	6	7	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123349179	C	C	123349179	2	2	122	1	0	0	0	0	0	0	0	1	17383	1683	59	5		5	WASL	7	123349179	Silent	SNP	T	TCGA-44-6145-01A-11D-1753-08	1674859	123349179	35789484	258	113383											
POT1	25913	broad.mit.edu	37	chr7	124503540	124503540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgagtagatgcccaaacaCgtaaggcttctaccattttg	8	9	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124503540	A	A	124503540	3	1	122	1	0	0	0	0	1	0	0	0	12355	536	19	3	1542	3	POT1	7	124503540	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1154361	124503540	34635123	259	113384											
POT1	25913	broad.mit.edu	37	chr7	124510993	124510993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgaaagcgaacaatatctCcatttttataaattattgga	6	5	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124510993	A	A	124510993	3	1	122	1	0	0	0	0	1	0	0	0	12355	855	30	3	1729	3	POT1	7	124510993	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	7453	124510993	34627670	260	113385											
CPA2	1358	broad.mit.edu	37	chr7	129919383	129919383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgaagtgaaatccataGtggacttcatcaagagtcat	9	6	3	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129919383	T	T	129919383	3	4	122	1	0	0	0	0	1	0	0	0	3822	1029	36	3	902	3	CPA2	7	129919383	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5408390	129919383	29219280	261	113386											
PODXL	5420	broad.mit.edu	37	chr7	131193655	131193655	+	Intron	DEL	C	-	-													aacatacattccctctccctCcctcagccctgctgtgagcc							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131193655	-	-	131193655	6	5	122	0	1	1	0	1	0	0	0	0	12275	870	30	0		0	PODXL	7	131193655	Intron	DEL	C	TCGA-44-6145-01A-11D-1753-08	1274272	131193655	27945008	262	113387											
PLXNA4	91584	broad.mit.edu	37	chr7	132169704	132169704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagaagcaatgttcgcCccaggtgggtctccctccac	10	15	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132169704	A	A	132169704	1	1	122	0	1	0	0	0	0	0	0	0	12217	610	22	2		2	PLXNA4	7	132169704	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	976049	132169704	26968959	263	113388											
LRGUK	136332	broad.mit.edu	37	chr7	133881945	133881945	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtatatatgtAtaaactttttactgatacat	8	3	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133881945	T	T	133881945	1	4	122	0	1	0	0	0	0	0	0	0	9030	464	16	5		5	LRGUK	7	133881945	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1712241	133881945	25256718	264	113389											
NUP205	23165	broad.mit.edu	37	chr7	135311040	135311040	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtgcattagagctgctaaGatcaggggtgattgtgagac	16	5	1	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135311040	C	C	135311040	3	2	122	1	0	0	0	0	1	0	0	0	10854	942	33	4	4854	4	NUP205	7	135311040	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1429095	135311040	23827623	265	113390											
DENND2A	27147	broad.mit.edu	37	chr7	140269611	140269611	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctgggcttccctcactgCccctctcctaggacgatgga	10	16	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140269611	G	G	140269611	1	3	122	0	1	0	0	0	0	0	0	0	4469	754	26	4		4	DENND2A	7	140269611	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	4958571	140269611	18869052	266	113391											
EPHB6	2051	broad.mit.edu	37	chr7	142562114	142562114	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctgtgggaccccacgggGctgggcagcgggctggactg	21	11	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142562114	C	C	142562114	3	2	122	1	0	0	0	0	1	0	0	0	5220	1203	42	4	566	4	EPHB6	7	142562114	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2292503	142562114	16576549	267	113392											
CLCN1	1180	broad.mit.edu	37	chr7	143043903	143043903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatgaaaaggaggcatcGgtggtcctggccagggaggg	18	6	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143043903	T	T	143043903	1	4	122	0	1	0	0	0	0	0	0	0	3493	1131	39	1		1	CLCN1	7	143043903	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	481789	143043903	16094760	268	113393											
OR2F1	26211	broad.mit.edu	37	chr7	143657537	143657537	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcatcagctctcctgtGcagactgctatcacctttca	7	14	5	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143657537	C	C	143657537	2	2	122	1	0	0	0	0	0	0	0	1	11090	1306	46	4		4	OR2F1	7	143657537	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	613634	143657537	15481126	269	113394											
OR2A14	135941	broad.mit.edu	37	chr7	143827061	143827061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcaatccaatgctgaacCccctgatatatagcctaagg	6	11	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143827061	A	A	143827061	3	1	122	1	0	0	0	0	1	0	0	0	11070	623	22	2	858	2	OR2A14	7	143827061	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	169524	143827061	15311602	270	113395											
C7orf33	202865	broad.mit.edu	37	chr7	148312477	148312477	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaggccacaaggatttccaGaactgacagcagttaagaat	10	8	0	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148312477	A	A	148312477	3	1	122	1	0	0	0	0	1	0	0	0	2413	942	33	4	528	4	C7orf33	7	148312477	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	4485416	148312477	10826186	271	113396											
C7orf29	113763	broad.mit.edu	37	chr7	150027589	150027589	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctggagcaggttcacacAcactttcaggagcagagtgt	11	10	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150027589	G	G	150027589	2	3	122	1	0	0	0	0	0	0	0	1	2410	146	6	5		5	C7orf29	7	150027589	Silent	SNP	A	TCGA-44-6145-01A-11D-1753-08	1715112	150027589	9111074	272	113397											
UBE3C	9690	broad.mit.edu	37	chr7	157000138	157000138	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatccaggggttctcctatgTcttttgaagattctagtcga	9	8	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157000138	A	A	157000138	3	1	122	1	0	0	0	0	1	0	0	0	17007	1667	58	5	1511	5	UBE3C	7	157000138	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	6972549	157000138	2138525	273	113398											
MYOM2	9172	broad.mit.edu	37	chr8	2020568	2020568	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgaagcgggtgcagccgCgcgccgagtggtaccgcgat	16	13	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2020568	T	T	2020568	3	4	122	1	0	0	0	0	1	0	0	0	10186	768	27	4	967	4	MYOM2	8	2020568	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08		2020568	144343454	274	113399											
MYOM2	9172	broad.mit.edu	37	chr8	2057201	2057201	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtagcaattcctctgaaatCggaattagcttatgagattt	8	6	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2057201	A	A	2057201	4	1	122	1	0	0	0	0	0	1	0	0	10186	893	31	3	3153	3	MYOM2	8	2057201	Nonsense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	36633	2057201	144306821	275	113400											
CSMD1	64478	broad.mit.edu	37	chr8	2823317	2823318	+	Missense_Mutation	DNP	GG	TT	TT													ctttgcagacaggtttgctcGgattccacctgccgtctttg					rs150713388	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2823318	TT	TT	2823317	3	4	122	1	0	0	0	0	1	0	0	0	3978	1116	39	1	1482	1	CSMD1	8	2823317	Missense_Mutation	DNP	GG	TCGA-44-6145-01A-11D-1753-08	766116	2823317	143540705	276	113401											
RP1L1	94137	broad.mit.edu	37	chr8	10468155	10468155	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaggtccttcgagatgctGagcagctcctggtaccgagg	13	12	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10468155	C	C	10468155	2	2	122	1	0	0	0	0	0	0	0	1	13644	1277	45	4		4	RP1L1	8	10468155	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	7644838	10468155	135895867	277	113402											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19362786	19362786	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactgttcagggtctccaagGctgattcaatggcttccacc	10	12	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19362786	C	C	19362786	3	2	122	1	0	0	0	0	1	0	0	0	3972	1203	42	4	1066	4	CSGALNACT1	8	19362786	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	8894631	19362786	127001236	278	113403											
SCARA5	286133	broad.mit.edu	37	chr8	27737266	27737266	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaccaggcggatcatcaTcggggcctccacgccacctg	10	16	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27737266	C	C	27737266	3	2	122	1	0	0	0	0	1	0	0	0	13992	1435	50	5	324	5	SCARA5	8	27737266	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	8374480	27737266	118626756	279	113404											
KCNU1	157855	broad.mit.edu	37	chr8	36663793	36663793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctatttcatagtttatgGcagctgatgacaagatcaag	8	6	3	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36663793	T	T	36663793	3	4	122	1	0	0	0	0	1	0	0	0	8163	1203	42	3	493	3	KCNU1	8	36663793	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	8926527	36663793	109700229	280	113405											
ERLIN2	11160	broad.mit.edu	37	chr8	37605553	37605553	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaacctgaaaaactctacGcaaagaagagggtcgcgccg	11	11	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37605553	T	T	37605553	1	4	122	0	1	0	0	0	0	0	0	0	5275	1102	38	3		3	ERLIN2	8	37605553	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	941760	37605553	108758469	281	113406											
PXDNL	137902	broad.mit.edu	37	chr8	52325734	52325734	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaacaaatgtcttcgtgtgGagttaattgcactgtcaact	8	7	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52325734	C	C	52325734	3	2	122	1	0	0	0	0	1	0	0	0	12956	1174	41	4	2547	4	PXDNL	8	52325734	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	14720181	52325734	94038288	282	113407											
TCEB1	6921	broad.mit.edu	37	chr8	74868104	74868104	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaacatccatcaaacaTtaaaagtgaatatatgaaga	4	5	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74868104	C	C	74868104	1	2	122	0	1	0	0	0	0	0	0	0	15801	1508	52	5		5	TCEB1	8	74868104	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	22542370	74868104	71495918	283	113408											
CRISPLD1	83690	broad.mit.edu	37	chr8	75925021	75925021	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttaagtttaatagtttacGccaaagtgtctttctaccaa	5	7	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75925021	C	C	75925021	1	2	122	0	1	0	0	0	0	0	0	0	3914	1102	38	4		4	CRISPLD1	8	75925021	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1056917	75925021	70439001	284	113409											
TMEM67	91147	broad.mit.edu	37	chr8	94811991	94811992	+	Intron	DNP	GG	TT	TT													cattggaattatacaggtaaGgaattatacaggtaatatta							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	94811992	TT	TT	94811991	1	4	122	0	1	0	0	0	0	0	0	0	16319	1015	35	2		2	TMEM67	8	94811991	Intron	DNP	GG	TCGA-44-6145-01A-11D-1753-08	18886970	94811991	51552031	285	113410											
CSMD3	114788	broad.mit.edu	37	chr8	113266336	113266336	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatttcctttacttccacTcttttgctgtctgttaccct	3	13	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113266336	G	G	113266336	1	3	122	0	1	0	0	0	0	0	0	0	3980	1566	54	5		5	CSMD3	8	113266336	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	18454345	113266336	33097686	286	113411											
CSMD3	114788	broad.mit.edu	37	chr8	113299383	113299383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtaaccagtatcacaagCataacgtacagtacttttag	7	8	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113299383	A	A	113299383	3	1	122	1	0	0	0	0	1	0	0	0	3980	710	25	3	1938	3	CSMD3	8	113299383	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	33047	113299383	33064639	287	113412											
COL22A1	169044	broad.mit.edu	37	chr8	139609156	139609156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatactcactttcaagctGcttccccagctcttcttgaa	5	14	4	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139609156	T	T	139609156	3	4	122	1	0	0	0	0	1	0	0	0	3713	1328	46	3	473	3	COL22A1	8	139609156	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	26309773	139609156	6754866	288	113413											
COL22A1	169044	broad.mit.edu	37	chr8	139648853	139648853	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataccaagatgaaaaccatAaaaatgagattttaaaaaat	5	4	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139648853	C	C	139648853	1	2	122	0	1	0	0	0	0	0	0	0	3713	377	13	5		5	COL22A1	8	139648853	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	39697	139648853	6715169	289	113414											
PTK2	5747	broad.mit.edu	37	chr8	141753495	141753495	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaacatacaagctcatataTaaagacataccaataggcac	4	10	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141753495	A	A	141753495	1	1	122	0	1	0	0	0	0	0	0	0	12868	1421	49	5		5	PTK2	8	141753495	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	2104642	141753495	4610527	290	113415											
GSDMD	79792	broad.mit.edu	37	chr8	144641996	144641996	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacgatgccatggatgggcaGatacagggcagcgtggagct	16	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144641996	C	C	144641996	3	2	122	1	0	0	0	0	1	0	0	0	6885	933	33	4	273	4	GSDMD	8	144641996	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2888501	144641996	1722026	291	113416											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5534764	5534764	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctttattcacagtgacagtCcctaaggaactgtacataat	7	9	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5534764	A	A	5534764	2	1	122	1	0	0	0	0	0	0	0	1	11712	842	30	3		3	PDCD1LG2	9	5534764	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08		5534764	135678667	292	113417											
PTPRD	5789	broad.mit.edu	37	chr9	8317961	8317961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcaggagacaatgaatGgggagaagcaaaagaaggga	15	5	0	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8317961	T	T	8317961	1	4	122	0	1	0	0	0	0	0	0	0	12907	1363	47	2		2	PTPRD	9	8317961	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2783197	8317961	132895470	293	113418											
PTPRD	5789	broad.mit.edu	37	chr9	8341992	8341992	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccgcactatgaggaaaatAgagaagaaaagcccaaataa	8	8	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8341992	T	T	8341992	1	4	122	0	1	0	0	0	0	0	0	0	12907	435	15	5		5	PTPRD	9	8341992	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	24031	8341992	132871439	294	113419											
PTPRD	5789	broad.mit.edu	37	chr9	8465644	8465644	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctctcccataacggatgCttctgcgcttcctagatatc	6	14	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8465644	G	G	8465644	3	3	122	1	0	0	0	0	1	0	0	0	12907	797	28	4	2327	4	PTPRD	9	8465644	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	123652	8465644	132747787	295	113420											
C9orf150	286343	broad.mit.edu	37	chr9	12821419	12821419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagacgtcaggctcatgcGccagttgcttgtaatcaatg	10	11	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12821419	T	T	12821419	3	4	122	1	0	0	0	0	1	0	0	0	2488	1087	38	3	353	3	C9orf150	9	12821419	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	4355775	12821419	128392012	296	113421											
TEK	7010	broad.mit.edu	37	chr9	27172593	27172593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcgctctactcaccacagCcttgttttccttaacaaaag	5	13	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27172593	A	A	27172593	1	1	122	0	1	0	0	0	0	0	0	0	15873	754	26	3		3	TEK	9	27172593	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	14351174	27172593	114040838	297	113422											
APTX	54840	broad.mit.edu	37	chr9	32987512	32987512	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attatatttcatttcttctcCacatcatctaccaatcacac	0	13	6	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32987512	T	T	32987512	1	4	122	0	1	0	0	0	0	0	0	0	822	609	21	4		4	APTX	9	32987512	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	5814919	32987512	108225919	298	113423											
FRMPD1	22844	broad.mit.edu	37	chr9	37746166	37746166	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcccggtggttctgccCtggaggcctgcccgagccca	15	15	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37746166	A	A	37746166	2	1	122	1	0	0	0	0	0	0	0	1	6117	668	24	2		2	FRMPD1	9	37746166	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	4758654	37746166	103467265	299	113424											
TRPM3	80036	broad.mit.edu	37	chr9	73461256	73461256	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaggcacaacattcccaTggcctatgttgactttctct	6	13	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73461256	C	C	73461256	1	2	122	0	1	0	0	0	0	0	0	0	16712	1479	51	5		5	TRPM3	9	73461256	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	35715090	73461256	67752175	300	113425											
PCSK5	5125	broad.mit.edu	37	chr9	78601129	78601129	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccagtctacctatttcAatgatcccaagtggcccagc	8	14	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78601129	G	G	78601129	3	3	122	1	0	0	0	0	1	0	0	0	11697	130	5	5	389	5	PCSK5	9	78601129	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	5139873	78601129	62612302	301	113426											
PRUNE2	158471	broad.mit.edu	37	chr9	79321909	79321909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggatcagggctgctttGttgattgtcacagaatgggt	14	7	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79321909	T	T	79321909	3	4	122	1	0	0	0	0	1	0	0	0	12747	1386	48	3	4033	3	PRUNE2	9	79321909	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	720780	79321909	61891522	302	113427											
VPS13A	23230	broad.mit.edu	37	chr9	79933209	79933209	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcactgtatacaactaAggaaaccatcccagaagaaa	6	10	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79933209	C	C	79933209	3	2	122	1	0	0	0	0	1	0	0	0	17316	72	3	5	5177	5	VPS13A	9	79933209	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	611300	79933209	61280222	303	113428											
NTRK2	4915	broad.mit.edu	37	chr9	87482440	87482440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatagggatgactggcggGgaacagggtgcagtgaaatg	18	5	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87482440	T	T	87482440	1	4	122	0	1	0	0	0	0	0	0	0	10802	1247	43	2		2	NTRK2	9	87482440	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	7549231	87482440	53730991	304	113429											
KIAA1529	57653	broad.mit.edu	37	chr9	100126312	100126312	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccacagcctccagaccacCcacccacctttgtcccacag	5	21	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100126312	G	G	100126312	1	3	122	0	1	0	0	0	0	0	0	0	8310	610	22	4		4	KIAA1529	9	100126312	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	12643872	100126312	41087119	305	113430											
NR4A3	8013	broad.mit.edu	37	chr9	102594968	102594968	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatcttgtattatattttctCagagaacagtgcagaaaaat	6	5	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102594968	T	T	102594968	1	4	122	0	1	0	0	0	0	0	0	0	10729	841	29	4		4	NR4A3	9	102594968	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2468656	102594968	38618463	306	113431											
ERP44	23071	broad.mit.edu	37	chr9	102778708	102778708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctcccaagtacaccatatCcggagcagaatgctattaca	7	12	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102778708	A	A	102778708	3	1	122	1	0	0	0	0	1	0	0	0	5285	855	30	3	582	3	ERP44	9	102778708	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	183740	102778708	38434723	307	113432											
GRIN3A	116443	broad.mit.edu	37	chr9	104375591	104375591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgaggcacaagtaataGcatttccttatgttctctga	8	7	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104375591	T	T	104375591	1	4	122	0	1	0	0	0	0	0	0	0	6849	986	34	3		3	GRIN3A	9	104375591	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1596883	104375591	36837840	308	113433											
ZFP37	7539	broad.mit.edu	37	chr9	115818720	115818720	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accgacctcccaaaagaccaTctagcatcgattccaccaat	4	16	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115818720	C	C	115818720	1	2	122	0	1	0	0	0	0	0	0	0	17774	1450	50	5		5	ZFP37	9	115818720	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	11443129	115818720	25394711	309	113434											
AKNA	80709	broad.mit.edu	37	chr9	117124771	117124771	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgacaagccttcaggtactCctcctctagggccgcgtggg	12	15	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117124771	G	G	117124771	3	3	122	1	0	0	0	0	1	0	0	0	463	864	30	4	2548	4	AKNA	9	117124771	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1306051	117124771	24088660	310	113435											
DBC1	1620	broad.mit.edu	37	chr9	122075577	122075577	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctggtgggagggctgcacTgagatacggccccatataaa	13	10	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122075577	A	A	122075577	2	1	122	1	0	0	0	0	0	0	0	1	4280	1567	55	5		5	DBC1	9	122075577	Silent	SNP	T	TCGA-44-6145-01A-11D-1753-08	4950806	122075577	19137854	311	113436											
LRSAM1	90678	broad.mit.edu	37	chr9	130251778	130251778	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaagaaagacctgatgcAtcggcagatcaggagccagg	15	8	1	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130251778	G	G	130251778	3	3	122	1	0	0	0	0	1	0	0	0	9130	217	8	5	1469	5	LRSAM1	9	130251778	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	8176201	130251778	10961653	312	113437											
DNM1	1759	broad.mit.edu	37	chr9	131011105	131011105	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggccatgttggcctgggGgagatgccaaccagccctat	15	11	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131011105	C	C	131011105	1	2	122	0	1	0	0	0	0	0	0	0	4710	1247	43	4		4	DNM1	9	131011105	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	759327	131011105	10202326	313	113438											
C9orf171	389799	broad.mit.edu	37	chr9	135447819	135447819	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccacggaggccgatcgccaGagagcattaaaagcccaccg	11	15	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135447819	A	A	135447819	2	1	122	1	0	0	0	0	0	0	0	1	2496	933	33	4		4	C9orf171	9	135447819	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	4436714	135447819	5765612	314	113439											
SURF6	6838	broad.mit.edu	37	chr9	136202824	136202824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtctacaccggctccggcCgcgtcccccgtttcgcaggc	11	19	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136202824	A	A	136202824	1	1	122	0	1	0	0	0	0	0	0	0	15524	667	23	1		1	SURF6	9	136202824	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	755005	136202824	5010607	315	113440											
FCN2	2220	broad.mit.edu	37	chr9	137777622	137777622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctccacaggttttccaGcggagggtggatggctctgt	14	10	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137777622	T	T	137777622	3	4	122	1	0	0	0	0	1	0	0	0	5849	962	34	3	460	3	FCN2	9	137777622	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1574798	137777622	3435809	316	113441											
OLFM1	10439	broad.mit.edu	37	chr9	138011774	138011775	+	Missense_Mutation	DNP	GG	TT	TT													ctaccccaagcgcagcgccgGggaggccttcatcatctgcg							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	138011775	TT	TT	138011774	3	4	122	1	0	0	0	0	1	0	0	0	10947	1232	43	2	1186	2	OLFM1	9	138011774	Missense_Mutation	DNP	GG	TCGA-44-6145-01A-11D-1753-08	234152	138011774	3201657	317	113442											
PAEP	5047	broad.mit.edu	37	chr9	138454470	138454470	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgttccctgtccccttggatCccctgccccaggctctgggc	10	19	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138454470	A	A	138454470	1	1	122	0	1	0	0	0	0	0	0	0	11476	870	30	3		3	PAEP	9	138454470	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	442696	138454470	2758961	318	113443											
PNPLA7	375775	broad.mit.edu	37	chr9	140389498	140389498	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcacctgtgggtacctgCgcttgatggacgtgagggct	15	10	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140389498	T	T	140389498	3	4	122	1	0	0	0	0	1	0	0	0	12265	768	27	4	1982	4	PNPLA7	9	140389498	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1935028	140389498	823933	319	113444											
TUBB8	347688	broad.mit.edu	37	chr10	93408	93408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccgccgttaggtagcgGccgtgacgggggtcacaggc	18	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93408	T	T	93408	2	4	122	1	0	0	0	0	0	0	0	1	16887	1190	42	3		3	TUBB8	10	93408	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08		93408	135441339	320	113445											
IL2RA	3559	broad.mit.edu	37	chr10	6061915	6061915	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctcttcacctgggggagaGagtaagtgatgctggtggag	16	6	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6061915	T	T	6061915	1	4	122	0	1	0	0	0	0	0	0	0	7756	957	33	3		3	IL2RA	10	6061915	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	5968507	6061915	129472832	321	113446											
IL2RA	3559	broad.mit.edu	37	chr10	6063697	6063697	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaaggcaagttggggacAgcaccgcgagtgagtccagg	16	9	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6063697	C	C	6063697	1	2	122	0	1	0	0	0	0	0	0	0	7756	203	7	5		5	IL2RA	10	6063697	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1782	6063697	129471050	322	113447											
CUBN	8029	broad.mit.edu	37	chr10	16957228	16957228	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgattgatttcctttaccctCtattcaaggtgtcctgtgtg	8	9	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16957228	A	A	16957228	1	1	122	0	1	0	0	0	0	0	0	0	4084	928	32	3		3	CUBN	10	16957228	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	10893531	16957228	118577519	323	113448											
ANKRD30A	91074	broad.mit.edu	37	chr10	37414967	37414967	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgagccggggctgcaGgaggaggtgggggcggtggg	24	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37414967	A	A	37414967	1	1	122	0	1	0	0	0	0	0	0	0	658	1015	35	4		4	ANKRD30A	10	37414967	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	20457739	37414967	98119780	324	113449											
ALOX5	240	broad.mit.edu	37	chr10	45877968	45877968	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactgtggacgaggaactggGcgagatccagctggtcagaa	16	8	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45877968	C	C	45877968	3	2	122	1	0	0	0	0	1	0	0	0	540	1203	42	4	194	4	ALOX5	10	45877968	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	8463001	45877968	89656779	325	113450											
MAPK8	5599	broad.mit.edu	37	chr10	49642911	49642911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaactgatttgctgttttGtttctcatagcacaggtgca	9	8	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49642911	T	T	49642911	1	4	122	0	1	0	0	0	0	0	0	0	9375	1392	48	3		3	MAPK8	10	49642911	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	3764943	49642911	85891836	326	113451											
C10orf35	219738	broad.mit.edu	37	chr10	71392867	71392867	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggacttgctgggccttGgtgtgagagcaggcatattt	16	6	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71392867	T	T	71392867	1	4	122	0	1	0	0	0	0	0	0	0	1614	1363	47	2		2	C10orf35	10	71392867	3'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	21749956	71392867	64141880	327	113452											
CDH23	64072	broad.mit.edu	37	chr10	73442341	73442341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgtttgtaagtacccaGggccactggccttgccctgc	13	12	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73442341	T	T	73442341	1	4	122	0	1	0	0	0	0	0	0	0	3138	1015	35	2		2	CDH23	10	73442341	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2049474	73442341	62092406	328	113453											
SFTPA2	729238	broad.mit.edu	37	chr10	81317784	81317784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgggaaactcctaccccGtgaggcccagggggtcccct	13	14	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81317784	T	T	81317784	1	4	122	0	1	0	0	0	0	0	0	0	14303	1160	40	3		3	SFTPA2	10	81317784	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	7875443	81317784	54216963	329	113454											
NRG3	10718	broad.mit.edu	37	chr10	84745264	84745264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagtgcaagcgaaaacaCagcctttctccccctgagtc	9	14	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84745264	A	A	84745264	3	1	122	1	0	0	0	0	1	0	0	0	10744	478	17	3	2272	3	NRG3	10	84745264	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3427480	84745264	50789483	330	113455											
CDHR1	92211	broad.mit.edu	37	chr10	85972827	85972827	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccccaaagcccagctctgtCtgtctctccctgcgcacagg	8	18	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85972827	A	A	85972827	1	1	122	0	1	0	0	0	0	0	0	0	3148	928	32	3		3	CDHR1	10	85972827	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1227563	85972827	49561920	331	113456											
BMPR1A	657	broad.mit.edu	37	chr10	88681386	88681386	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccacttccagccctacAtcatggctgacatctacagc	5	15	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88681386	G	G	88681386	3	3	122	1	0	0	0	0	1	0	0	0	1475	217	8	5	1310	5	BMPR1A	10	88681386	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	2708559	88681386	46853361	332	113457											
FAS	355	broad.mit.edu	37	chr10	90768652	90768652	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgattttctaggcttagAagtggaaataaactgcaccc	8	8	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90768652	T	T	90768652	3	4	122	1	0	0	0	0	1	0	0	0	5738	246	9	5	355	5	FAS	10	90768652	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	2087266	90768652	44766095	333	113458											
EXOC6	54536	broad.mit.edu	37	chr10	94700597	94700597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggttagtctaagtcatGgtgccttaatataatgaata	8	5	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94700597	T	T	94700597	1	4	122	0	1	0	0	0	0	0	0	0	5350	1363	47	2		2	EXOC6	10	94700597	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	3931945	94700597	40834150	334	113459											
RBP4	5950	broad.mit.edu	37	chr10	95351677	95351677	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaggaaaggcaagcagattCactgacccccacgtgtatct	9	12	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95351677	A	A	95351677	1	1	122	0	1	0	0	0	0	0	0	0	13266	841	29	3		3	RBP4	10	95351677	3'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	651080	95351677	40183070	335	113460											
ENTPD1	953	broad.mit.edu	37	chr10	97583120	97583120	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcattgccagaaaacgttaAggtaagtcaaatatatctgt	8	6	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97583120	T	T	97583120	3	4	122	1	0	0	0	0	1	0	0	0	5180	86	3	5	246	5	ENTPD1	10	97583120	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	2231443	97583120	37951627	336	113461											
SLIT1	6585	broad.mit.edu	37	chr10	98778813	98778813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgccctggttctggcacGgactggacaagcagagatca	14	10	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98778813	T	T	98778813	3	4	122	1	0	0	0	0	1	0	0	0	14853	1116	39	1	1850	1	SLIT1	10	98778813	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1195693	98778813	36755934	337	113462											
SLIT1	6585	broad.mit.edu	37	chr10	98799743	98799743	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaggccttgagctactcAcagttctgtgacattcttgg	11	10	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98799743	T	T	98799743	5	4	122	1	0	0	0	0	0	0	1	0	14853	173	6	5	2373	5	SLIT1	10	98799743	Splice_Site	SNP	A	TCGA-44-6145-01A-11D-1753-08	20930	98799743	36735004	338	113463											
RRP12	23223	broad.mit.edu	37	chr10	99144970	99144970	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccttaagccaggctagCaggggttgtaaatcattctc	10	9	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99144970	A	A	99144970	2	1	122	1	0	0	0	0	0	0	0	1	13797	697	25	3		3	RRP12	10	99144970	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	345227	99144970	36389777	339	113464											
COL17A1	1308	broad.mit.edu	37	chr10	105794442	105794442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctgcataggttgccaGggctcctgagacacccgggg	14	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105794442	T	T	105794442	3	4	122	1	0	0	0	0	1	0	0	0	3706	991	35	2	814	2	COL17A1	10	105794442	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	6649472	105794442	29740305	340	113465											
C10orf79	80217	broad.mit.edu	37	chr10	105952008	105952008	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagttggcattgataataaAgacttttccttctgctgttc	9	7	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105952008	G	G	105952008	3	3	122	1	0	0	0	0	1	0	0	0	1629	72	3	5	3610	5	C10orf79	10	105952008	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	157566	105952008	29582739	341	113466											
SORCS3	22986	broad.mit.edu	37	chr10	106961056	106961056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattccaaccaggtcttcaCctgtctgtggggtggggtgg	14	10	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106961056	A	A	106961056	1	1	122	0	1	0	0	0	0	0	0	0	15046	522	18	3		3	SORCS3	10	106961056	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1009048	106961056	28573691	342	113467											
SORCS1	114815	broad.mit.edu	37	chr10	108448049	108448049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgaaagtcttcacttgGttgtcaatcttcttgttagc	9	7	5	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108448049	T	T	108448049	3	4	122	1	0	0	0	0	1	0	0	0	15044	1252	44	3	2347	3	SORCS1	10	108448049	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1486993	108448049	27086698	343	113468											
SORCS1	114815	broad.mit.edu	37	chr10	108536224	108536224	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaggtgaaatggagagatGattaaattagcactattttc	10	4	0	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108536224	T	T	108536224	1	4	122	0	1	0	0	0	0	0	0	0	15044	1305	45	3		3	SORCS1	10	108536224	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	88175	108536224	26998523	344	113469											
NRAP	4892	broad.mit.edu	37	chr10	115383307	115383307	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcgctagccaggtccctcTtggctttggctgccaggaag	12	14	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115383307	C	C	115383307	3	2	122	1	0	0	0	0	1	0	0	0	10733	1609	56	5	2834	5	NRAP	10	115383307	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	6847083	115383307	20151440	345	113470											
C10orf81	79949	broad.mit.edu	37	chr10	115529412	115529412	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttggtgaaataatgctGgcaggccagcggcatgaatg	14	7	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115529412	A	A	115529412	1	1	122	0	1	0	0	0	0	0	0	0	1630	1363	47	4		4	C10orf81	10	115529412	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	146105	115529412	20005335	346	113471											
C10orf81	79949	broad.mit.edu	37	chr10	115531902	115531902	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaacaaatatttactgaaAccctgccatgcacttttcgt	4	10	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115531902	C	C	115531902	1	2	122	0	1	0	0	0	0	0	0	0	1630	58	2	5		5	C10orf81	10	115531902	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	2490	115531902	20002845	347	113472											
TRUB1	142940	broad.mit.edu	37	chr10	116698036	116698036	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcttctgaggcggcggtGgtgtcttcgccgtctttgaa	15	11	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116698036	T	T	116698036	2	4	122	1	0	0	0	0	0	0	0	1	16727	1335	47	2		2	TRUB1	10	116698036	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	1166134	116698036	18836711	348	113473											
C10orf84	63877	broad.mit.edu	37	chr10	120070458	120070458	+	Intron	DEL	A	-	-													caaatctcaatttatttcttAaaaaaaaaaatactttgctg							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120070458	-	-	120070458	6	5	122	0	1	1	0	1	0	0	0	0	1632	377	13	0		0	C10orf84	10	120070458	Intron	DEL	A	TCGA-44-6145-01A-11D-1753-08	3372422	120070458	15464289	349	113474											
CPXM2	119587	broad.mit.edu	37	chr10	125526716	125526716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaggctgcaggacaacgCggaccctctaccatacaaga	10	14	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125526716	A	A	125526716	1	1	122	0	1	0	0	0	0	0	0	0	3870	783	27	3		3	CPXM2	10	125526716	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	5456258	125526716	10008031	350	113475											
ZRANB1	54764	broad.mit.edu	37	chr10	126655064	126655064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcatcaggatccaggaagcAcagagaaacacttaaaagat	9	8	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126655064	T	T	126655064	1	4	122	0	1	0	0	0	0	0	0	0	18351	174	6	5		5	ZRANB1	10	126655064	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1128348	126655064	8879683	351	113476											
DHX32	55760	broad.mit.edu	37	chr10	127530320	127530320	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaaggatacctgttaccAtggctgcgattgttagcact	9	9	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127530320	C	C	127530320	3	2	122	1	0	0	0	0	1	0	0	0	4545	217	8	5	716	5	DHX32	10	127530320	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	875256	127530320	8004427	352	113477											
DOCK1	1793	broad.mit.edu	37	chr10	128821640	128821640	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttcagttttacttgccaaGtgctcaccttggctctgcta	8	11	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128821640	C	C	128821640	1	2	122	0	1	0	0	0	0	0	0	0	4724	1044	36	4		4	DOCK1	10	128821640	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1291320	128821640	6713107	353	113478											
NPS	594857	broad.mit.edu	37	chr10	129347661	129347661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaaggctacgtttttctGcaaagaaaaatgttgcattt	8	5	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129347661	T	T	129347661	1	4	122	0	1	0	0	0	0	0	0	0	10694	1334	46	3		3	NPS	10	129347661	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	526021	129347661	6187086	354	113479											
TCERG1L	256536	broad.mit.edu	37	chr10	132891506	132891506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattggttgaaaaaatgctcCtggtcctttcttttttgaac	7	7	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132891506	A	A	132891506	3	1	122	1	0	0	0	0	1	0	0	0	15808	680	24	2	84	2	TCERG1L	10	132891506	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3543845	132891506	2643241	355	113480											
INPP5A	3632	broad.mit.edu	37	chr10	134463832	134463832	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacggtgatgtacctatgtGctggagcccctcttatacct	9	12	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134463832	C	C	134463832	1	2	122	0	1	0	0	0	0	0	0	0	7824	1334	46	4		4	INPP5A	10	134463832	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1572326	134463832	1070915	356	113481											
B4GALNT4	338707	broad.mit.edu	37	chr11	379988	379988	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagcgaggatatggacgtgGagcgggccctgcgcgccgcg	19	11	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	379988	T	T	379988	4	4	122	1	0	0	0	0	0	1	0	0	1274	1175	41	3	2673	3	B4GALNT4	11	379988	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08		379988	134626528	357	113482											
PTDSS2	81490	broad.mit.edu	37	chr11	473830	473830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgggggtccctgcaGcctcccacctccctcctggg	13	17	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	473830	T	T	473830	1	4	122	0	1	0	0	0	0	0	0	0	12843	986	34	3		3	PTDSS2	11	473830	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	93842	473830	134532686	358	113483											
MUC2	4583	broad.mit.edu	37	chr11	1084795	1084795	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcacctgctccatttacGggagtggccactacatcacc	9	14	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1084795	A	A	1084795	3	1	122	1	0	0	0	0	1	0	0	0	10069	1116	39	4	2668	4	MUC2	11	1084795	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	610965	1084795	133921721	359	113484											
TRPM5	29850	broad.mit.edu	37	chr11	2433235	2433235	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaacttccctggctcaagtGacccacccacctcagcctcc	5	20	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2433235	T	T	2433235	1	4	122	0	1	0	0	0	0	0	0	0	16714	1305	45	3		3	TRPM5	11	2433235	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1348440	2433235	132573281	360	113485											
TRIM21	6737	broad.mit.edu	37	chr11	4410993	4410993	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttctcctgcagagaaagaCagcttattcgtcccccatgc	8	14	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4410993	G	G	4410993	1	3	122	0	1	0	0	0	0	0	0	0	16619	493	17	4		4	TRIM21	11	4410993	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1977758	4410993	130595523	361	113486											
OR52E2	119678	broad.mit.edu	37	chr11	5080580	5080580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggcttcaaagatgatcCctctgaggttgatccagaag	12	9	2	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5080580	A	A	5080580	3	1	122	1	0	0	0	0	1	0	0	0	11209	623	22	2	702	2	OR52E2	11	5080580	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	669587	5080580	129925936	362	113487											
OR51M1	390059	broad.mit.edu	37	chr11	5410856	5410856	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgtactatctactatcCttgctggccctcactgacct	5	16	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5410856	A	A	5410856	2	1	122	1	0	0	0	0	0	0	0	1	11197	668	24	2		2	OR51M1	11	5410856	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	330276	5410856	129595660	363	113488											
OR51I2	390064	broad.mit.edu	37	chr11	5475122	5475122	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccttgcgctatgcaactgTgctcaccactgaagtcattg	8	14	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5475122	A	A	5475122	3	1	122	1	0	0	0	0	1	0	0	0	11195	1696	59	5	406	5	OR51I2	11	5475122	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	64266	5475122	129531394	364	113489											
UBQLN3	50613	broad.mit.edu	37	chr11	5530683	5530683	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgcatgtgtctgtaactgAgaaatcctccttgtctttgg	10	8	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5530683	T	T	5530683	3	4	122	1	0	0	0	0	1	0	0	0	17024	304	11	5	1865	5	UBQLN3	11	5530683	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	55561	5530683	129475833	365	113490											
OR52B6	340980	broad.mit.edu	37	chr11	5603032	5603032	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcctcctatgctcaatcCcgttatttatggagtgagga	8	10	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5603032	T	T	5603032	3	4	122	1	0	0	0	0	1	0	0	0	11207	623	22	4	928	4	OR52B6	11	5603032	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	72349	5603032	129403484	366	113491											
OR52N4	390072	broad.mit.edu	37	chr11	5776693	5776693	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcggcagaaggcctttaaTacctgcactgcccacatttg	9	13	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5776693	C	C	5776693	2	2	122	1	0	0	0	0	0	0	0	1	11223	1403	49	5		5	OR52N4	11	5776693	Silent	SNP	T	TCGA-44-6145-01A-11D-1753-08	173661	5776693	129229823	367	113492											
STK33	65975	broad.mit.edu	37	chr11	8494590	8494590	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacatacttgaaaatggtaCatttcctcttttctttactt	3	8	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8494590	T	T	8494590	1	4	122	0	1	0	0	0	0	0	0	0	15418	493	17	4		4	STK33	11	8494590	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2717897	8494590	126511926	368	113493											
PDE3B	5140	broad.mit.edu	37	chr11	14695269	14695269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctcttctcatccagagGtgtataggccaacattgctc	9	11	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14695269	T	T	14695269	1	4	122	0	1	0	0	0	0	0	0	0	11732	1276	44	3		3	PDE3B	11	14695269	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	6200679	14695269	120311247	369	113494											
SOX6	55553	broad.mit.edu	37	chr11	16505961	16505961	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggctcctttaaccaggccCttctcatggtacatgcacca	7	15	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16505961	G	G	16505961	1	3	122	0	1	0	0	0	0	0	0	0	15069	696	24	4		4	SOX6	11	16505961	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1810692	16505961	118500555	370	113495											
USH1C	10083	broad.mit.edu	37	chr11	17517185	17517185	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaaggagctttcggacCggttgggggctttcagctac	13	10	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17517185	A	A	17517185	1	1	122	0	1	0	0	0	0	0	0	0	17160	639	23	1		1	USH1C	11	17517185	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1011224	17517185	117489331	371	113496											
PTPN5	84867	broad.mit.edu	37	chr11	18765712	18765712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggagcccttcagcctcGtccagtgcctccatcactat	7	17	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18765712	T	T	18765712	3	4	122	1	0	0	0	0	1	0	0	0	12899	1136	40	3	1613	3	PTPN5	11	18765712	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1248527	18765712	116240804	372	113497											
NELL1	4745	broad.mit.edu	37	chr11	20969029	20969029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtgaggctggggctgGtcttctggggcatgagattt	20	5	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20969029	T	T	20969029	1	4	122	0	1	0	0	0	0	0	0	0	10428	1276	44	3		3	NELL1	11	20969029	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2203317	20969029	114037487	373	113498											
ANO3	63982	broad.mit.edu	37	chr11	26669345	26669345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttctgattacatcccaCgttttgtttatgaatacaaa	4	8	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26669345	A	A	26669345	3	1	122	1	0	0	0	0	1	0	0	0	698	536	19	3	2612	3	ANO3	11	26669345	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	5700316	26669345	108337171	374	113499											
MPPED2	744	broad.mit.edu	37	chr11	30517121	30517121	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcatttcccatcacaaagTacaacagccgagactgtgtg	8	11	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30517121	G	G	30517121	1	3	122	0	1	0	0	0	0	0	0	0	9836	1653	57	5		5	MPPED2	11	30517121	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	3847776	30517121	104489395	375	113500											
PAMR1	25891	broad.mit.edu	37	chr11	35515796	35515796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattccactctgctccagggCaggcttcattaatgactgtg	9	11	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35515796	A	A	35515796	3	1	122	1	0	0	0	0	1	0	0	0	11507	710	25	3	2159	3	PAMR1	11	35515796	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	4998675	35515796	99490720	376	113501											
LDLRAD3	143458	broad.mit.edu	37	chr11	36103486	36103486	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccctacttcttgtgtaaatCtgtaaatgttcagccaccat	5	11	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36103486	G	G	36103486	1	3	122	0	1	0	0	0	0	0	0	0	8779	928	32	4		4	LDLRAD3	11	36103486	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	587690	36103486	98903030	377	113502											
ACCSL	390110	broad.mit.edu	37	chr11	44069676	44069676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatctatacccagctgttGgagataacgctgcacttgca	9	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44069676	T	T	44069676	3	4	122	1	0	0	0	0	1	0	0	0	134	1339	47	2	92	2	ACCSL	11	44069676	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	7966190	44069676	90936840	378	113503											
DGKZ	8525	broad.mit.edu	37	chr11	46398736	46398736	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccccacttcccctctcccCacctcaccctgctcacccac	1	27	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46398736	T	T	46398736	2	4	122	1	0	0	0	0	0	0	0	1	4514	581	21	4		4	DGKZ	11	46398736	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	2329060	46398736	88607780	379	113504											
MYBPC3	4607	broad.mit.edu	37	chr11	47368495	47368495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctctgagtctctcaccaCagcctctcagagaggggacg	11	14	4	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47368495	T	T	47368495	1	4	122	0	1	0	0	0	0	0	0	0	10107	493	17	4		4	MYBPC3	11	47368495	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	969759	47368495	87638021	380	113505											
OR5L2	26338	broad.mit.edu	37	chr11	55595244	55595244	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttctgtgatctaccccctCtcctaagtcttgcttgctct	5	15	6	1	rs142870159		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595244	A	A	55595244	3	1	122	1	0	0	0	0	1	0	0	0	11265	913	32	3	552	3	OR5L2	11	55595244	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	8226749	55595244	79411272	381	113506											
OR10AG1	282770	broad.mit.edu	37	chr11	55735507	55735507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttccccaattactacagGaattgtgatggtccaggaag	10	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55735507	T	T	55735507	3	4	122	1	0	0	0	0	1	0	0	0	10991	1174	41	3	475	3	OR10AG1	11	55735507	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	140263	55735507	79271009	382	113507											
OR8H2	390151	broad.mit.edu	37	chr11	55873077	55873077	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacttccccaattttagctCtgtcctgcactgatacatac	4	14	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55873077	A	A	55873077	3	1	122	1	0	0	0	0	1	0	0	0	11332	912	32	3	561	3	OR8H2	11	55873077	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	137570	55873077	79133439	383	113508											
SERPING1	710	broad.mit.edu	37	chr11	57381888	57381888	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcgatgcagcaccagacagTgctggaactgacagagactg	13	10	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57381888	A	A	57381888	3	1	122	1	0	0	0	0	1	0	0	0	14229	1696	59	5	1363	5	SERPING1	11	57381888	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	1508811	57381888	77624628	384	113509											
MS4A2	2206	broad.mit.edu	37	chr11	59861070	59861070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaagactaagattctgGgtcctaatgtaagtaagaag	13	4	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59861070	T	T	59861070	1	4	122	0	1	0	0	0	0	0	0	0	9954	1241	43	2		2	MS4A2	11	59861070	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2479182	59861070	75145446	385	113510											
MS4A4A	51338	broad.mit.edu	37	chr11	60073661	60073661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgtaaagtgctctgttGtacccctggtggggtgagta	15	6	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60073661	T	T	60073661	3	4	122	1	0	0	0	0	1	0	0	0	9956	1377	48	3	657	3	MS4A4A	11	60073661	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	212591	60073661	74932855	386	113511											
MS4A14	84689	broad.mit.edu	37	chr11	60154083	60154083	+	Intron	DEL	C	-	-													agatttctgcagtgttctctCcctaaaagttttccaacatc							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60154083	-	-	60154083	6	5	122	0	1	1	0	1	0	0	0	0	9952	870	30	0		0	MS4A14	11	60154083	Intron	DEL	C	TCGA-44-6145-01A-11D-1753-08	80422	60154083	74852433	387	113512											
C11orf66	220004	broad.mit.edu	37	chr11	61253253	61253253	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtggcctggcagcacacAgggcatttcttttgcagatt	12	10	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61253253	T	T	61253253	1	4	122	0	1	0	0	0	0	0	0	0	1668	203	7	5		5	C11orf66	11	61253253	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1099170	61253253	73753263	388	113513											
SCGB1D4	404552	broad.mit.edu	37	chr11	62063945	62063945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggtcagtcatgctgctGctggtgatgataggctaaca	14	7	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62063945	T	T	62063945	1	4	122	0	1	0	0	0	0	0	0	0	14010	1334	46	3		3	SCGB1D4	11	62063945	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	810692	62063945	72942571	389	113514											
SLC22A8	9376	broad.mit.edu	37	chr11	62763345	62763345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccagctagtgggcaggaCgaagagagggagatgcaggc	18	7	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62763345	A	A	62763345	1	1	122	0	1	0	0	0	0	0	0	0	14574	551	19	3		3	SLC22A8	11	62763345	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	699400	62763345	72243171	390	113515											
RARRES3	5920	broad.mit.edu	37	chr11	63306891	63306891	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctagcagctgatgaacatcAgcaaggcgtctccaggatga	12	10	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63306891	G	G	63306891	1	3	122	0	1	0	0	0	0	0	0	0	13165	203	7	5		5	RARRES3	11	63306891	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	543546	63306891	71699625	391	113516											
PACS1	55690	broad.mit.edu	37	chr11	65988115	65988115	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaggtgggctttgggcTggagcatgtgtcccgcgagc	17	11	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65988115	C	C	65988115	3	2	122	1	0	0	0	0	1	0	0	0	11466	1580	55	5	1086	5	PACS1	11	65988115	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	2681224	65988115	69018401	392	113517											
ALDH3B2	222	broad.mit.edu	37	chr11	67432013	67432013	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaggctccgtctcctgcaCgtccaccagcaccgtggggg	12	17	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67432013	G	G	67432013	3	3	122	1	0	0	0	0	1	0	0	0	500	536	19	4	442	4	ALDH3B2	11	67432013	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1443898	67432013	67574503	393	113518											
SLCO2B1	11309	broad.mit.edu	37	chr11	74876920	74876920	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctatggggctatccttgTggccctggcgggcctgctca	15	12	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74876920	A	A	74876920	3	1	122	1	0	0	0	0	1	0	0	0	14841	1696	59	5	388	5	SLCO2B1	11	74876920	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	7444907	74876920	60129596	394	113519											
RAB38	23682	broad.mit.edu	37	chr11	87847169	87847169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctactaggatttggcaCagccagagcagctggcaacc	12	12	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87847169	A	A	87847169	3	1	122	1	0	0	0	0	1	0	0	0	13036	478	17	3	16	3	RAB38	11	87847169	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	12970249	87847169	47159347	395	113520											
GRM5	2915	broad.mit.edu	37	chr11	88300971	88300971	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaggtacataagtagcccAggcagatgccagcaaggata	12	8	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88300971	T	T	88300971	3	4	122	1	0	0	0	0	1	0	0	0	6866	188	7	5	1770	5	GRM5	11	88300971	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	453802	88300971	46705545	396	113521											
NAALAD2	10003	broad.mit.edu	37	chr11	89902008	89902008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaagatacttgtaaacCgcttttccacgaaattaatt	6	7	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89902008	A	A	89902008	1	1	122	0	1	0	0	0	0	0	0	0	10222	667	23	1		1	NAALAD2	11	89902008	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1601037	89902008	45104508	397	113522											
MTNR1B	4544	broad.mit.edu	37	chr11	92714571	92714571	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgttctacagaatctaagtCgtggggtctcgtgctgactg	12	8	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92714571	A	A	92714571	1	1	122	0	1	0	0	0	0	0	0	0	10046	899	31	3		3	MTNR1B	11	92714571	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2812563	92714571	42291945	398	113523											
CRYAB	1410	broad.mit.edu	37	chr11	111782353	111782353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaagatcagactccaaCaggtgctctccgaagaactg	11	10	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111782353	A	A	111782353	2	1	122	1	0	0	0	0	0	0	0	1	3938	465	17	3		3	CRYAB	11	111782353	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	19067782	111782353	23224163	399	113524											
FAM55D	54827	broad.mit.edu	37	chr11	114453728	114453728	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggagggagatggataagtTtagagcagaccaaacctgaa	13	5	0	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114453728	A	A	114453728	3	1	122	1	0	0	0	0	1	0	0	0	5638	1841	64	5	1538	5	FAM55D	11	114453728	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	2671375	114453728	20552788	400	113525											
DSCAML1	57453	broad.mit.edu	37	chr11	117309750	117309750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggcggaccctgtgatgGggtgtggggagtccccccgt	18	11	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117309750	T	T	117309750	1	4	122	0	1	0	0	0	0	0	0	0	4809	1247	43	2		2	DSCAML1	11	117309750	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2856022	117309750	17696766	401	113526											
FXYD6	53826	broad.mit.edu	37	chr11	117711112	117711112	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagacacacagccccaTcagagatctccagggcagac	10	13	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117711112	G	G	117711112	1	3	122	0	1	0	0	0	0	0	0	0	6182	1450	50	5		5	FXYD6	11	117711112	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	401362	117711112	17295404	402	113527											
PHLDB1	23187	broad.mit.edu	37	chr11	118498623	118498623	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgcctgtggtggccatcAgcctgagtgaatacccagct	12	12	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118498623	T	T	118498623	3	4	122	1	0	0	0	0	1	0	0	0	11946	188	7	5	1102	5	PHLDB1	11	118498623	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	787511	118498623	16507893	403	113528											
SCN3B	55800	broad.mit.edu	37	chr11	123513202	123513202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtcgtcttcacaaaggGccgatgcgcctcaaactcaa	9	15	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123513202	T	T	123513202	3	4	122	1	0	0	0	0	1	0	0	0	14032	1203	42	3	262	3	SCN3B	11	123513202	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5014579	123513202	11493314	404	113529											
KIRREL3	84623	broad.mit.edu	37	chr11	126301280	126301280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggcctttttctctgtcCccctccctgagatcccggat	8	17	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126301280	A	A	126301280	1	1	122	0	1	0	0	0	0	0	0	0	8397	623	22	2		2	KIRREL3	11	126301280	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2788078	126301280	8705236	405	113530											
CACNA1C	775	broad.mit.edu	37	chr12	2595485	2595485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctatcgctcccagcacCtttcccgctgctggctacac	6	20	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2595485	A	A	2595485	1	1	122	0	1	0	0	0	0	0	0	0	2566	696	24	2		2	CACNA1C	12	2595485	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08		2595485	131256410	406	113531											
ANO2	57101	broad.mit.edu	37	chr12	6030187	6030187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccatctccaagtccctGgccacccgcctgactcacct	5	20	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6030187	T	T	6030187	1	4	122	0	1	0	0	0	0	0	0	0	697	1363	47	2		2	ANO2	12	6030187	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	3434702	6030187	127821708	407	113532											
KLRC3	3823	broad.mit.edu	37	chr12	10568380	10568380	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagttacgttcagcatgatCtgagtcttttatcctgtaat	7	8	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10568380	A	A	10568380	3	1	122	1	0	0	0	0	1	0	0	0	8488	913	32	3	225	3	KLRC3	12	10568380	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	4538193	10568380	123283515	408	113533											
KLRC3	3823	broad.mit.edu	37	chr12	10584683	10584683	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttatatatattttttatatAgcgccatacaaaagaactta	3	5	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10584683	T	T	10584683	1	4	122	0	1	0	0	0	0	0	0	0	8488	435	15	5		5	KLRC3	12	10584683	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	16303	10584683	123267212	409	113534											
PTPRO	5800	broad.mit.edu	37	chr12	15747894	15747894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtacatttttatccatcaGtgtgtgcaactgatgtggat	9	7	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15747894	T	T	15747894	3	4	122	1	0	0	0	0	1	0	0	0	12917	1020	36	3	3672	3	PTPRO	12	15747894	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5163211	15747894	118104001	410	113535											
PDE3A	5139	broad.mit.edu	37	chr12	20522824	20522824	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgcttggccgccgcgacAtggctggtgctgaggctgag	17	11	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20522824	T	T	20522824	2	4	122	1	0	0	0	0	0	0	0	1	11731	204	8	5		5	PDE3A	12	20522824	Silent	SNP	A	TCGA-44-6145-01A-11D-1753-08	4774930	20522824	113329071	411	113536											
PDE3A	5139	broad.mit.edu	37	chr12	20799381	20799382	+	Intron	INS	-	A	A													actcttagttcttggaccccINSaaagttcataaactgatgac							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20799382	A	A	20799381	6	5	122	0	1	1	1	0	0	0	0	0	11731	609	21	0		0	PDE3A	12	20799381	Intron	INS	-	TCGA-44-6145-01A-11D-1753-08	276557	20799381	113052514	412	113537											
PYROXD1	79912	broad.mit.edu	37	chr12	21621372	21621372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctattcaaacttgacaCaaaataactacccattacat	4	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21621372	A	A	21621372	1	1	122	0	1	0	0	0	0	0	0	0	12974	493	17	3		3	PYROXD1	12	21621372	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	821991	21621372	112230523	413	113538											
GOLT1B	51026	broad.mit.edu	37	chr12	21661496	21661496	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattttttctcttgttcagGtaaggcatattattgtctct	8	6	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21661496	T	T	21661496	5	4	122	1	0	0	0	0	0	0	1	0	6635	1275	44	3	307	3	GOLT1B	12	21661496	Splice_Site	SNP	G	TCGA-44-6145-01A-11D-1753-08	40124	21661496	112190399	414	113539											
ST8SIA1	6489	broad.mit.edu	37	chr12	22439496	22439496	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttttcccccctcttgctgCctacatgtatattagaaaaa	4	13	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22439496	T	T	22439496	1	4	122	0	1	0	0	0	0	0	0	0	15349	754	26	4		4	ST8SIA1	12	22439496	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	778000	22439496	111412399	415	113540											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	122	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2958788	25398284	108453611	416	113541											
OVCH1	341350	broad.mit.edu	37	chr12	29583861	29583861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgccctcccagagtaccCctgtgagtccaggcagaaac	10	15	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29583861	A	A	29583861	1	1	122	0	1	0	0	0	0	0	0	0	11417	638	22	2		2	OVCH1	12	29583861	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	4185577	29583861	104268034	417	113542											
TMTC1	83857	broad.mit.edu	37	chr12	29670372	29670372	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctactcaccagtgccaagcgGagctccctctgagaaggctg	11	14	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29670372	T	T	29670372	2	4	122	1	0	0	0	0	0	0	0	1	16383	1161	41	3		3	TMTC1	12	29670372	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	86511	29670372	104181523	418	113543											
CNTN1	1272	broad.mit.edu	37	chr12	41327516	41327516	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagtcctgttccggatatccGatggcggaaggttctagaac	12	9	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41327516	C	C	41327516	3	2	122	1	0	0	0	0	1	0	0	0	3672	1058	37	4	851	4	CNTN1	12	41327516	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	11657144	41327516	92524379	419	113544											
DBX2	440097	broad.mit.edu	37	chr12	45409971	45409971	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacatcgctccaaagttgtTaggctctaagcactgatgag	9	9	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45409971	A	A	45409971	1	1	122	0	1	0	0	0	0	0	0	0	4293	1769	61	5		5	DBX2	12	45409971	3'UTR	SNP	T	TCGA-44-6145-01A-11D-1753-08	4082455	45409971	88441924	420	113545											
DBX2	440097	broad.mit.edu	37	chr12	45410014	45410014	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagctagctggcattagaGtccagatgttactattaagc	9	8	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45410014	T	T	45410014	1	4	122	0	1	0	0	0	0	0	0	0	4293	1044	36	3		3	DBX2	12	45410014	3'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	43	45410014	88441881	421	113546											
PLEKHA9	51054	broad.mit.edu	37	chr12	45566945	45566945	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagcagccatcatacaaCctcatcagattccagcccat	5	17	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45566945	A	A	45566945	1	1	122	0	1	0	0	0	0	0	0	0	12158	522	18	3		3	PLEKHA9	12	45566945	3'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	156931	45566945	88284950	422	113547											
ACVR1B	91	broad.mit.edu	37	chr12	52377917	52377917	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgctgctagtgggctgGcacacctgcacatggagatc	13	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52377917	A	A	52377917	3	1	122	1	0	0	0	0	1	0	0	0	221	1203	42	4	1091	4	ACVR1B	12	52377917	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	6810972	52377917	81473978	423	113548											
KRT77	374454	broad.mit.edu	37	chr12	53096691	53096691	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccttgtcaatgaaggaGgcaaacttgttgttgagaac	10	8	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53096691	A	A	53096691	2	1	122	1	0	0	0	0	0	0	0	1	8561	987	35	4		4	KRT77	12	53096691	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	718774	53096691	80755204	424	113549											
TENC1	23371	broad.mit.edu	37	chr12	53457304	53457304	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccggccccccttcagcagcTgtcccctggggtgtgcatct	11	18	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53457304	A	A	53457304	1	1	122	0	1	0	0	0	0	0	0	0	15880	1595	55	5		5	TENC1	12	53457304	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	360613	53457304	80394591	425	113550											
NCKAP1L	3071	broad.mit.edu	37	chr12	54901471	54901471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcataggggcccactggtGgcttactgaggaggaacttc	15	9	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54901471	T	T	54901471	1	4	122	0	1	0	0	0	0	0	0	0	10317	1363	47	2		2	NCKAP1L	12	54901471	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1444167	54901471	78950424	426	113551											
NCKAP1L	3071	broad.mit.edu	37	chr12	54912534	54912534	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtaactggagggaggtgGgggaggcaggacatatgtga	20	3	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54912534	A	A	54912534	1	1	122	0	1	0	0	0	0	0	0	0	10317	1247	43	4		4	NCKAP1L	12	54912534	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	11063	54912534	78939361	427	113552											
INHBE	83729	broad.mit.edu	37	chr12	57850274	57850274	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagcctggagcaggccgGgccaggaggaggacccccac	16	13	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57850274	T	T	57850274	2	4	122	1	0	0	0	0	0	0	0	1	7814	1219	43	2		2	INHBE	12	57850274	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	2937740	57850274	76001621	428	113553											
KIF5A	3798	broad.mit.edu	37	chr12	57963420	57963420	+	Frame_Shift_Del	DEL	G	-	-													gagaagacaaaggcccagaaGgagacgattgcgaagctgga							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57963420	-	-	57963420	7	5	122	1	0	1	0	1	0	0	0	0	8375	991	35	0	1113	0	KIF5A	12	57963420	Frame_Shift_Del	DEL	G	TCGA-44-6145-01A-11D-1753-08	113146	57963420	75888475	429	113554											
LEMD3	23592	broad.mit.edu	37	chr12	65633891	65633891	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtcaagtgattgattcAtttgtaaattttatttattt	5	2	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65633891	T	T	65633891	1	4	122	0	1	0	0	0	0	0	0	0	8793	232	8	5		5	LEMD3	12	65633891	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	7670471	65633891	68218004	430	113555											
HMGA2	8091	broad.mit.edu	37	chr12	66221815	66221815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctctcctaagagacccaGgggaagacccaaaggcagca	11	14	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66221815	T	T	66221815	3	4	122	1	0	0	0	0	1	0	0	0	7291	1000	35	2	152	2	HMGA2	12	66221815	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	587924	66221815	67630080	431	113556											
IL22	50616	broad.mit.edu	37	chr12	68647059	68647059	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacctccttagccagcatgAaggtgcggttggtgatatag	12	8	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68647059	G	G	68647059	3	3	122	1	0	0	0	0	1	0	0	0	7742	246	9	5	389	5	IL22	12	68647059	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	2425244	68647059	65204836	432	113557											
GLIPR1	11010	broad.mit.edu	37	chr12	75875626	75875626	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcagacttgggacccaGcactagcccaaattgcaaaa	8	11	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75875626	C	C	75875626	3	2	122	1	0	0	0	0	1	0	0	0	6505	971	34	4	193	4	GLIPR1	12	75875626	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	7228567	75875626	57976269	433	113558											
NAV3	89795	broad.mit.edu	37	chr12	78334269	78334269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctgctcccatctctttGgtaaagcacaacttaagtta	6	11	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78334269	T	T	78334269	1	4	122	0	1	0	0	0	0	0	0	0	10279	1363	47	2		2	NAV3	12	78334269	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2458643	78334269	55517626	434	113559											
LRRIQ1	84125	broad.mit.edu	37	chr12	85518290	85518290	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaaaatattgagcctagtGaaaaaatgtaagatatataa	6	4	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85518290	T	T	85518290	4	4	122	1	0	0	0	0	0	1	0	0	9116	1291	45	3	4062	3	LRRIQ1	12	85518290	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	7184021	85518290	48333605	435	113560											
USP44	84101	broad.mit.edu	37	chr12	95927532	95927532	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttccaatgggtgattgTtcaaaccatgttcgaaagat	8	7	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95927532	C	C	95927532	2	2	122	1	0	0	0	0	0	0	0	1	17202	1722	60	5		5	USP44	12	95927532	Silent	SNP	T	TCGA-44-6145-01A-11D-1753-08	10409242	95927532	37924363	436	113561											
CDK17	5128	broad.mit.edu	37	chr12	96707200	96707200	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcttggtcactctcaccatCtgatcccatttttagatttt	5	11	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96707200	A	A	96707200	3	1	122	1	0	0	0	0	1	0	0	0	3163	913	32	3	1349	3	CDK17	12	96707200	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	779668	96707200	37144695	437	113562											
NEDD1	121441	broad.mit.edu	37	chr12	97313900	97313900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttggccatggtagtaaCcaggtacagtatgagtttat	10	7	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97313900	A	A	97313900	3	1	122	1	0	0	0	0	1	0	0	0	10404	506	18	3	525	3	NEDD1	12	97313900	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	606700	97313900	36537995	438	113563											
C12orf42	374470	broad.mit.edu	37	chr12	103699904	103699904	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgaactgttccaagccTgcttgggtgctcctctggct	10	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103699904	A	A	103699904	3	1	122	1	0	0	0	0	1	0	0	0	1701	1580	55	5	611	5	C12orf42	12	103699904	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	6386004	103699904	30151991	439	113564											
PWP1	11137	broad.mit.edu	37	chr12	108086637	108086637	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgggtcttacggtctacggGagtaatgatcaagatcctta	11	7	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108086637	T	T	108086637	2	4	122	1	0	0	0	0	0	0	0	1	12951	1161	41	3		3	PWP1	12	108086637	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	4386733	108086637	25765258	440	113565											
IFT81	28981	broad.mit.edu	37	chr12	110628939	110628939	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttattttcagtgaaacattCacctgttaatttctgcacat	4	8	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110628939	T	T	110628939	1	4	122	0	1	0	0	0	0	0	0	0	7635	841	29	4		4	IFT81	12	110628939	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2542302	110628939	23222956	441	113566											
CCDC63	160762	broad.mit.edu	37	chr12	111311505	111311506	+	Intron	DNP	CT	TA	TA													aagaacattgcagtttttgtCtgagcacacttcagttagtg							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	111311506	TA	TA	111311505	1	4	122	0	1	0	0	0	0	0	0	0	2862	928	32	4		4	CCDC63	12	111311505	Intron	DNP	CT	TCGA-44-6145-01A-11D-1753-08	682566	111311505	22540390	442	113567											
MYL2	4633	broad.mit.edu	37	chr12	111349011	111349011	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagcaacacgtgctaaggacGaggggaggggaactgagacg	17	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111349011	C	C	111349011	1	2	122	0	1	0	0	0	0	0	0	0	10141	1073	37	4		4	MYL2	12	111349011	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	37506	111349011	22502884	443	113568											
RASAL1	8437	broad.mit.edu	37	chr12	113557022	113557022	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctggcatctcccgcagctCcagcacttcatcccagtgcg	8	18	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113557022	A	A	113557022	4	1	122	1	0	0	0	0	0	1	0	0	13171	864	30	3	1921	3	RASAL1	12	113557022	Nonsense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2208011	113557022	20294873	444	113569											
PLBD2	196463	broad.mit.edu	37	chr12	113812724	113812724	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccctggccagagtgacctCctggttgcccacaacacctg	9	17	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113812724	T	T	113812724	2	4	122	1	0	0	0	0	0	0	0	1	12121	842	30	4		4	PLBD2	12	113812724	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	255702	113812724	20039171	445	113570											
UNC119B	84747	broad.mit.edu	37	chr12	121157681	121157681	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtggggcagactcaaacAtaattctttgcttttttctt	7	9	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121157681	T	T	121157681	1	4	122	0	1	0	0	0	0	0	0	0	17109	232	8	5		5	UNC119B	12	121157681	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	7344957	121157681	12694214	446	113571											
SNRNP35	11066	broad.mit.edu	37	chr12	123950105	123950105	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacatgaacgattggatgccCatcgccaaggagtatgatcc	10	10	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123950105	G	G	123950105	2	3	122	1	0	0	0	0	0	0	0	1	14969	581	21	4		4	SNRNP35	12	123950105	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	2792424	123950105	9901790	447	113572											
RIMBP2	23504	broad.mit.edu	37	chr12	130926762	130926762	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacggagatgcggtaggtgcAggctgccatgttgagcttct	15	9	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130926762	T	T	130926762	3	4	122	1	0	0	0	0	1	0	0	0	13472	188	7	5	2122	5	RIMBP2	12	130926762	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	6976657	130926762	2925133	448	113573											
PARP4	143	broad.mit.edu	37	chr13	25060347	25060347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtacaggagaaccatgCaacaagggcctcacattacc	8	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25060347	A	A	25060347	3	1	122	1	0	0	0	0	1	0	0	0	11557	709	25	3	3959	3	PARP4	13	25060347	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08		25060347	90109531	449	113574											
CDK8	1024	broad.mit.edu	37	chr13	26974649	26974649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcagaacaggctatgcaGgacccctatttcttagaaga	8	11	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26974649	T	T	26974649	3	4	122	1	0	0	0	0	1	0	0	0	3180	991	35	2	1031	2	CDK8	13	26974649	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1914302	26974649	88195229	450	113575											
POSTN	10631	broad.mit.edu	37	chr13	38143960	38143960	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtattttatttcaggaccTatgagaaggacaatgaaaaa	9	4	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38143960	C	C	38143960	5	2	122	1	0	0	0	0	0	0	1	0	12354	1536	53	5	258	5	POSTN	13	38143960	Splice_Site	SNP	T	TCGA-44-6145-01A-11D-1753-08	11169311	38143960	77025918	451	113576											
CCDC122	160857	broad.mit.edu	37	chr13	44411448	44411449	+	Missense_Mutation	DNP	CG	TT	TT													tccaatgcattttcttaattCggctgcagttttttccaatt							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	44411449	TT	TT	44411448	3	4	122	1	0	0	0	0	1	0	0	0	2784	893	31	4	35	4	CCDC122	13	44411448	Missense_Mutation	DNP	CG	TCGA-44-6145-01A-11D-1753-08	6267488	44411448	70758430	452	113577											
C13orf31	144811	broad.mit.edu	37	chr13	44457980	44457980	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggaataaccacaaatcAgagaggagtcacaatagcag	10	7	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44457980	G	G	44457980	3	3	122	1	0	0	0	0	1	0	0	0	1739	188	7	5	825	5	C13orf31	13	44457980	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	46532	44457980	70711898	453	113578											
CYSLTR2	57105	broad.mit.edu	37	chr13	49281193	49281193	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgttttcatgctaaatctGgccatttcagatctcctgtt	6	10	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49281193	T	T	49281193	2	4	122	1	0	0	0	0	0	0	0	1	4235	1335	47	2		2	CYSLTR2	13	49281193	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	4823213	49281193	65888685	454	113579											
KLHL1	57626	broad.mit.edu	37	chr13	70281875	70281875	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacagaccccaacagcatctCtgggcatactcaaaggagcc	9	14	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70281875	A	A	70281875	3	1	122	1	0	0	0	0	1	0	0	0	8436	913	32	3	185	3	KLHL1	13	70281875	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	21000682	70281875	44888003	455	113580											
SLITRK5	26050	broad.mit.edu	37	chr13	88329776	88329776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgacgtgagctcctttaaCatgcagtacagcgtgtacgg	11	11	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88329776	A	A	88329776	3	1	122	1	0	0	0	0	1	0	0	0	14860	477	17	3	2135	3	SLITRK5	13	88329776	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	18047901	88329776	26840102	456	113581											
UGGT2	55757	broad.mit.edu	37	chr13	96648274	96648274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattaattccttaaaaacCaatgggtataataataccaa	3	7	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96648274	A	A	96648274	1	1	122	0	1	0	0	0	0	0	0	0	17068	609	21	2		2	UGGT2	13	96648274	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	8318498	96648274	18521604	457	113582											
FARP1	10160	broad.mit.edu	37	chr13	99100408	99100408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcggcctgacttcaccttGtgtttctgtaagcgatgccc	11	12	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99100408	T	T	99100408	1	4	122	0	1	0	0	0	0	0	0	0	5733	1392	48	3		3	FARP1	13	99100408	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2452134	99100408	16069470	458	113583											
TPP2	7174	broad.mit.edu	37	chr13	103307411	103307411	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcagagggagaatgacaGccagtggctacaaatggatt	12	8	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103307411	A	A	103307411	1	1	122	0	1	0	0	0	0	0	0	0	16536	986	34	4		4	TPP2	13	103307411	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	4207003	103307411	11862467	459	113584											
KDELC1	79070	broad.mit.edu	37	chr13	103441357	103441357	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccttcaaggggactaacCttacctcttcatcgtgatct	7	12	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103441357	T	T	103441357	1	4	122	0	1	0	0	0	0	0	0	0	8187	696	24	4		4	KDELC1	13	103441357	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	133946	103441357	11728521	460	113585											
TMCO3	55002	broad.mit.edu	37	chr13	114193696	114193696	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggagctgctggacgtctccAtggagctgggctgtttcctg	15	11	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114193696	T	T	114193696	3	4	122	1	0	0	0	0	1	0	0	0	16120	217	8	5	1598	5	TMCO3	13	114193696	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	10752339	114193696	976182	461	113586											
ZNF828	283489	broad.mit.edu	37	chr13	115091623	115091623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtttacttaaatgtccacGttgtaattttgaatcaaatt	5	5	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115091623	T	T	115091623	3	4	122	1	0	0	0	0	1	0	0	0	18310	1145	40	3	2308	3	ZNF828	13	115091623	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	897927	115091623	78255	462	113587											
OR4K15	81127	broad.mit.edu	37	chr14	20443947	20443947	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactttctgcttgcaaacctGtcatttatagacgtatgtgt	7	8	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20443947	C	C	20443947	2	2	122	1	0	0	0	0	0	0	0	1	11164	1364	48	4		4	OR4K15	14	20443947	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08		20443947	86905593	463	113588											
REC8	9985	broad.mit.edu	37	chr14	24648811	24648811	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcctcctagggcctggcctGaggtggaggcgccagaagct	16	12	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24648811	A	A	24648811	3	1	122	1	0	0	0	0	1	0	0	0	13307	1291	45	4	1393	4	REC8	14	24648811	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	4204864	24648811	82700729	464	113589											
LRFN5	145581	broad.mit.edu	37	chr14	42356224	42356224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatttgatactgaacaaCaatcagctgactttaatttc	4	9	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356224	A	A	42356224	3	1	122	1	0	0	0	0	1	0	0	0	9028	477	17	3	398	3	LRFN5	14	42356224	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	17707413	42356224	64993316	465	113590											
FKBP3	2287	broad.mit.edu	37	chr14	45590603	45590603	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtgacagtcaggaaaaAggtactgctaactactcatc	10	8	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45590603	G	G	45590603	1	3	122	0	1	0	0	0	0	0	0	0	5966	87	3	5		5	FKBP3	14	45590603	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	3234379	45590603	61758937	466	113591											
MDGA2	161357	broad.mit.edu	37	chr14	47530708	47530708	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttggcaagatattttcacCtcacggccaatctggatgtt	8	10	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47530708	T	T	47530708	2	4	122	1	0	0	0	0	0	0	0	1	9500	680	24	4		4	MDGA2	14	47530708	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	1940105	47530708	59818832	467	113592											
ABHD12B	145447	broad.mit.edu	37	chr14	51371123	51371123	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaatgaagacttggccCaaacaccacctgtgatgtat	7	11	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51371123	T	T	51371123	1	4	122	0	1	0	0	0	0	0	0	0	77	609	21	4		4	ABHD12B	14	51371123	3'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	3840415	51371123	55978417	468	113593											
FRMD6	122786	broad.mit.edu	37	chr14	52192462	52192462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtgtgaataatttgaaGtatttattgtttttatctct	8	2	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52192462	T	T	52192462	1	4	122	0	1	0	0	0	0	0	0	0	6114	1044	36	3		3	FRMD6	14	52192462	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	821339	52192462	55157078	469	113594											
KIAA0586	9786	broad.mit.edu	37	chr14	58941420	58941420	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaatataatggtcctccAtttccgccagttgcttctac	5	12	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58941420	G	G	58941420	2	3	122	1	0	0	0	0	0	0	0	1	8256	204	8	5		5	KIAA0586	14	58941420	Silent	SNP	A	TCGA-44-6145-01A-11D-1753-08	6748958	58941420	48408120	470	113595											
PCNX	22990	broad.mit.edu	37	chr14	71576295	71576295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagactggagtccgcaggagGgcatggaaggccatgtaagt	16	7	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71576295	T	T	71576295	3	4	122	1	0	0	0	0	1	0	0	0	11685	1232	43	2	7009	2	PCNX	14	71576295	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	12634875	71576295	35773245	471	113596											
ZFYVE1	53349	broad.mit.edu	37	chr14	73490697	73490697	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttccaacaacagatctgctCcactacacatgaatcccact	3	16	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73490697	A	A	73490697	1	1	122	0	1	0	0	0	0	0	0	0	17789	870	30	3		3	ZFYVE1	14	73490697	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1914402	73490697	33858843	472	113597											
ACOT2	10965	broad.mit.edu	37	chr14	74040031	74040031	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtaagtatatgtttaactTaaaccatccaactgtttcag	6	7	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74040031	A	A	74040031	1	1	122	0	1	0	0	0	0	0	0	0	152	1769	61	5		5	ACOT2	14	74040031	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	549334	74040031	33309509	473	113598											
SERPINA4	5267	broad.mit.edu	37	chr14	95034407	95034407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaccaaggagggctctgCccagcagggatcctggcttg	15	13	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95034407	A	A	95034407	1	1	122	0	1	0	0	0	0	0	0	0	14204	754	26	3		3	SERPINA4	14	95034407	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	20994376	95034407	12315133	474	113599											
CDC42BPB	9578	broad.mit.edu	37	chr14	103433266	103433266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagcagtgagacctgcacCccagcctgagaggcacggcc	12	15	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103433266	A	A	103433266	1	1	122	0	1	0	0	0	0	0	0	0	3103	638	22	2		2	CDC42BPB	14	103433266	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	8398859	103433266	3916274	475	113600											
OR4N4	283694	broad.mit.edu	37	chr15	22383396	22383396	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtcgacatgtagtctgTcaagtggattttataataag	10	4	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22383396	A	A	22383396	4	1	122	1	0	0	0	0	0	1	0	0	11172	1673	58	5	926	5	OR4N4	15	22383396	Nonsense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08		22383396	80147996	476	113601											
NDN	4692	broad.mit.edu	37	chr15	23932034	23932034	+	Frame_Shift_Del	DEL	C	-	-													catcttcttctggtccttgaCcagcacgtaccacatgagct							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23932034	-	-	23932034	7	5	122	1	0	1	0	1	0	0	0	0	10342	507	18	0	638	0	NDN	15	23932034	Frame_Shift_Del	DEL	C	TCGA-44-6145-01A-11D-1753-08	1548638	23932034	78599358	477	113602											
C15orf2	23742	broad.mit.edu	37	chr15	24923779	24923779	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggggaatccagcaacccCagcaccagttataggcttaa	9	12	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24923779	G	G	24923779	3	3	122	1	0	0	0	0	1	0	0	0	1797	594	21	4	2767	4	C15orf2	15	24923779	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	991745	24923779	77607613	478	113603											
GABRB3	2562	broad.mit.edu	37	chr15	26806081	26806081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggtggagagcctacccGgttgctttcgctctttgaac	13	10	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806081	T	T	26806081	2	4	122	1	0	0	0	0	0	0	0	1	6228	1115	39	1		1	GABRB3	15	26806081	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	1882302	26806081	75725311	479	113604											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32917863	32917863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggtcccattttatggaggtAcagtgatttgctttaatcga	10	7	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32917863	T	T	32917863	1	4	122	0	1	0	0	0	0	0	0	0	865	406	14	5		5	ARHGAP11A	15	32917863	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	6111782	32917863	69613529	480	113605											
LPCAT4	254531	broad.mit.edu	37	chr15	34652348	34652348	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagctcttccaggctcctGcccccatccagagctgctag	9	16	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34652348	T	T	34652348	2	4	122	1	0	0	0	0	0	0	0	1	9000	1306	46	3		3	LPCAT4	15	34652348	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	1734485	34652348	67879044	481	113606											
PAK6	56924	broad.mit.edu	37	chr15	40565945	40565945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagctcttctgctgtgGcccctccagtgagctcacca	10	16	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40565945	T	T	40565945	1	4	122	0	1	0	0	0	0	0	0	0	11498	1218	42	3		3	PAK6	15	40565945	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	5913597	40565945	61965447	482	113607											
MAPKBP1	23005	broad.mit.edu	37	chr15	42107526	42107526	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctttattacctgctcctcaGacaacaccatccgcctgtgg	6	16	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42107526	T	T	42107526	3	4	122	1	0	0	0	0	1	0	0	0	9384	942	33	3	1300	3	MAPKBP1	15	42107526	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1541581	42107526	60423866	483	113608											
PLDN	26258	broad.mit.edu	37	chr15	45897768	45897768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaggtttaattgttttttGttgttttttttttttttcag	7	1	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45897768	T	T	45897768	1	4	122	0	1	0	0	0	0	0	0	0	12146	1392	48	3		3	PLDN	15	45897768	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	3790242	45897768	56633624	484	113609											
FAM63B	54629	broad.mit.edu	37	chr15	59064464	59064464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctttctacttcctacaGcttttggggtggaggaaaac	11	9	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59064464	T	T	59064464	1	4	122	0	1	0	0	0	0	0	0	0	5648	986	34	3		3	FAM63B	15	59064464	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	13166696	59064464	43466928	485	113610											
TLN2	83660	broad.mit.edu	37	chr15	63132786	63132786	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtataagtttttacccaccGagctgagggaagatgagggc	13	7	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63132786	A	A	63132786	3	1	122	1	0	0	0	0	1	0	0	0	16071	1059	37	4	7828	4	TLN2	15	63132786	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	4068322	63132786	39398606	486	113611											
KIAA0101	9768	broad.mit.edu	37	chr15	64673508	64673508	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccccccgccctccagtaccAcactcgatcgcctcaccttt	4	23	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64673508	T	T	64673508	1	4	122	0	1	0	0	0	0	0	0	0	8225	174	6	5		5	KIAA0101	15	64673508	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	1540722	64673508	37857884	487	113612											
CILP	8483	broad.mit.edu	37	chr15	65489472	65489472	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgttgttgactgcaagtGgcaagtggttgaccaggtac	14	7	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65489472	A	A	65489472	3	1	122	1	0	0	0	0	1	0	0	0	3460	1348	47	4	406	4	CILP	15	65489472	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	815964	65489472	37041920	488	113613											
AAGAB	79719	broad.mit.edu	37	chr15	67524259	67524259	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagggaggggaaatatatAtatttatatgcaacactcac	8	6	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67524259	T	T	67524259	1	4	122	0	1	0	0	0	0	0	0	0	15	464	16	5		5	AAGAB	15	67524259	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	2034787	67524259	35007133	489	113614											
PTPN9	5780	broad.mit.edu	37	chr15	75816478	75816478	+	Intron	DEL	C	-	-													taaaaaaaaaaaaaaaaaaaCaaagtccaaacaggacacca							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75816478	-	-	75816478	6	5	122	0	1	1	0	1	0	0	0	0	12902	493	17	0		0	PTPN9	15	75816478	Intron	DEL	C	TCGA-44-6145-01A-11D-1753-08	8292219	75816478	26714914	490	113615											
NTRK3	4916	broad.mit.edu	37	chr15	88679799	88679799	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagcgttgtcaccctctcGtacggtcaggttgacgtggc	12	12	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88679799	T	T	88679799	2	4	122	1	0	0	0	0	0	0	0	1	10803	1153	40	3		3	NTRK3	15	88679799	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	12863321	88679799	13851593	491	113616											
RGS11	8786	broad.mit.edu	37	chr16	323670	323670	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggggtgccctccacggtcCcagggccaccggagcctggc	15	17	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	323670	T	T	323670	1	4	122	0	1	0	0	0	0	0	0	0	13403	638	22	4		4	RGS11	16	323670	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08		323670	90031083	492	113617											
XYLT1	64131	broad.mit.edu	37	chr16	17235204	17235204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcactccaggaagagccgatCcaggccctgcttccgaatga	11	14	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17235204	A	A	17235204	3	1	122	1	0	0	0	0	1	0	0	0	17590	855	30	3	1510	3	XYLT1	16	17235204	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	16911534	17235204	73119549	493	113618											
XYLT1	64131	broad.mit.edu	37	chr16	17294435	17294435	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccgtggaccaccaggacAaaggcgattctgaccgggtt	14	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17294435	C	C	17294435	3	2	122	1	0	0	0	0	1	0	0	0	17590	127	5	5	1925	5	XYLT1	16	17294435	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	59231	17294435	73060318	494	113619											
ACSM2A	123876	broad.mit.edu	37	chr16	20486821	20486821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatccccctgactccctcaCatacattcatgcctatctat	2	18	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20486821	A	A	20486821	1	1	122	0	1	0	0	0	0	0	0	0	183	493	17	3		3	ACSM2A	16	20486821	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	3192386	20486821	69867932	495	113620											
THUMPD1	55623	broad.mit.edu	37	chr16	20748556	20748556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctactaccactgtgtaCtgtggattggtgagatccac	9	9	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20748556	A	A	20748556	3	1	122	1	0	0	0	0	1	0	0	0	16005	564	20	3	357	3	THUMPD1	16	20748556	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	261735	20748556	69606197	496	113621											
CHP2	63928	broad.mit.edu	37	chr16	23767157	23767157	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttaccctctttgaaattTggctttgcagccgcatggat	9	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23767157	A	A	23767157	1	1	122	0	1	0	0	0	0	0	0	0	3398	1827	63	5		5	CHP2	16	23767157	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	3018601	23767157	66587596	497	113622											
GTF3C1	2975	broad.mit.edu	37	chr16	27544602	27544602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccgcccgtgggaaaccCcaggctcaccagctcttccc	9	20	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27544602	A	A	27544602	1	1	122	0	1	0	0	0	0	0	0	0	6937	638	22	2		2	GTF3C1	16	27544602	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	3777445	27544602	62810151	498	113623											
SPNS1	83985	broad.mit.edu	37	chr16	28990742	28990742	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtggtctgggctacattGcaggctccaaagtgaaggat	13	8	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28990742	T	T	28990742	3	4	122	1	0	0	0	0	1	0	0	0	15192	1319	46	3	631	3	SPNS1	16	28990742	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1446140	28990742	61364011	499	113624											
CORO1A	11151	broad.mit.edu	37	chr16	30198005	30198005	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcccgcacaatgacaaCgtcattgccagtggctccga	11	13	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30198005	T	T	30198005	2	4	122	1	0	0	0	0	0	0	0	1	3785	535	19	4		4	CORO1A	16	30198005	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	1207263	30198005	60156748	500	113625											
RNF40	9810	broad.mit.edu	37	chr16	30776605	30776605	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catcgagaagctgcggaagcGagagcaaaagctcaataagc	12	9	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30776605	C	C	30776605	3	2	122	1	0	0	0	0	1	0	0	0	13604	1058	37	4	897	4	RNF40	16	30776605	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	578600	30776605	59578148	501	113626											
ITGAD	3681	broad.mit.edu	37	chr16	31422734	31422734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgtgaatgaggacaagCtgatagacgtggccattggg	17	5	0	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422734	A	A	31422734	3	1	122	1	0	0	0	0	1	0	0	0	7954	796	28	3	1657	3	ITGAD	16	31422734	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	646129	31422734	58932019	502	113627											
ABCC11	85320	broad.mit.edu	37	chr16	48234088	48234088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaacctgagatgaggacagCtgctgggaggctgttattga	14	7	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48234088	A	A	48234088	1	1	122	0	1	0	0	0	0	0	0	0	51	812	28	3		3	ABCC11	16	48234088	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	16811354	48234088	42120665	503	113628											
SALL1	6299	broad.mit.edu	37	chr16	51173276	51173276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accattggcaaactcgcttgGgaccgctctctgtggtttct	10	12	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51173276	T	T	51173276	3	4	122	1	0	0	0	0	1	0	0	0	13921	1232	43	2	1125	2	SALL1	16	51173276	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2939188	51173276	39181477	504	113629											
MMP2	4313	broad.mit.edu	37	chr16	55519270	55519270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggctcatgccttcgccCcaggcactggtgttggggga	14	13	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55519270	A	A	55519270	3	1	122	1	0	0	0	0	1	0	0	0	9751	623	22	2	610	2	MMP2	16	55519270	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	4345994	55519270	34835483	505	113630											
CDH11	1009	broad.mit.edu	37	chr16	65006768	65006768	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtctgaagcgataatacTtggtaaagtagaatcaaaac	9	5	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65006768	C	C	65006768	1	2	122	0	1	0	0	0	0	0	0	0	3127	1624	56	5		5	CDH11	16	65006768	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	9487498	65006768	25347985	506	113631											
TMCO7	79613	broad.mit.edu	37	chr16	69074247	69074247	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgtggccaaaacagatGgtgaagttcaagtacgcaga	12	7	1	3	rs115929607	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69074247	C	C	69074247	3	2	122	1	0	0	0	0	1	0	0	0	16124	1348	47	4	3097	4	TMCO7	16	69074247	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	4067479	69074247	21280506	507	113632											
WWP2	11060	broad.mit.edu	37	chr16	69964119	69964119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtggaccacaatacccGcaccaccacctttaaggatc	6	15	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69964119	T	T	69964119	3	4	122	1	0	0	0	0	1	0	0	0	17543	1087	38	3	1453	3	WWP2	16	69964119	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	889872	69964119	20390634	508	113633											
ZFHX3	463	broad.mit.edu	37	chr16	72822796	72822796	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtctgggcaggggtagGgctgaagctcaagacgtttt	16	7	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72822796	A	A	72822796	1	1	122	0	1	0	0	0	0	0	0	0	17760	1247	43	4		4	ZFHX3	16	72822796	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2858677	72822796	17531957	509	113634											
FA2H	79152	broad.mit.edu	37	chr16	74773857	74773857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctttggctccacacacCctcttcctctcctcattccc	3	21	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74773857	A	A	74773857	1	1	122	0	1	0	0	0	0	0	0	0	5398	638	22	2		2	FA2H	16	74773857	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1951061	74773857	15580896	510	113635											
CNTNAP4	85445	broad.mit.edu	37	chr16	76350316	76350316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctcctggcagatgactGtgatgatcctcttgtgtctg	11	10	2	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76350316	T	T	76350316	3	4	122	1	0	0	0	0	1	0	0	0	3681	1377	48	3	111	3	CNTNAP4	16	76350316	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1576459	76350316	14004437	511	113636											
CNTNAP4	85445	broad.mit.edu	37	chr16	76509915	76509915	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgtaactgtaccaacactGgttacagaggagctacttgc	9	9	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76509915	C	C	76509915	3	2	122	1	0	0	0	0	1	0	0	0	3681	1348	47	4	1790	4	CNTNAP4	16	76509915	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	159599	76509915	13844838	512	113637											
ADAMTS18	170692	broad.mit.edu	37	chr16	77355074	77355074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgaaactgctttagagCctagttcatgatcacatccc	6	12	3	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77355074	A	A	77355074	3	1	122	1	0	0	0	0	1	0	0	0	263	739	26	3	1512	3	ADAMTS18	16	77355074	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	845159	77355074	12999679	513	113638											
GAN	8139	broad.mit.edu	37	chr16	81410975	81410975	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttggaactgtttcctggtGattctgggtacattttctca	9	8	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81410975	T	T	81410975	1	4	122	0	1	0	0	0	0	0	0	0	6294	1305	45	3		3	GAN	16	81410975	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	4055901	81410975	8943778	514	113639											
ZNF778	197320	broad.mit.edu	37	chr16	89293777	89293777	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacgtccaaacagaccctGgacagaagccctatgaatgt	8	12	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89293777	T	T	89293777	4	4	122	1	0	0	0	0	0	1	0	0	18280	1349	47	2	1015	2	ZNF778	16	89293777	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	7882802	89293777	1060976	515	113640											
ANKFY1	51479	broad.mit.edu	37	chr17	4075872	4075872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgctgccgtctgcatccgGcttgtccagaggataccccg	12	15	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4075872	A	A	4075872	3	1	122	1	0	0	0	0	1	0	0	0	626	1203	42	4	407	4	ANKFY1	17	4075872	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08		4075872	77119338	516	113641											
PLD2	5338	broad.mit.edu	37	chr17	4713016	4713016	+	Frame_Shift_Del	DEL	C	-	-													atccggaagcgctcaggtggCcaccgtgttcctggcctcac							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4713016	-	-	4713016	7	5	122	1	0	1	0	1	0	0	0	0	12141	726	26	0	671	0	PLD2	17	4713016	Frame_Shift_Del	DEL	C	TCGA-44-6145-01A-11D-1753-08	637144	4713016	76482194	517	113642											
ALOX12	239	broad.mit.edu	37	chr17	6913416	6913416	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcaaatggccatctcaTggcatctgagtcgccgccag	10	13	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6913416	A	A	6913416	3	1	122	1	0	0	0	0	1	0	0	0	536	1464	51	5	1833	5	ALOX12	17	6913416	Missense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	2200400	6913416	74281794	518	113643											
TP53	7157	broad.mit.edu	37	chr17	7574034	7574034	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcgctcacgcccacggatCtgcagcaacagaggaggggg	15	12	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7574034	A	A	7574034	5	1	122	1	0	0	0	0	0	0	1	0	16505	927	32	3	196	3	TP53	17	7574034	Splice_Site	SNP	C	TCGA-44-6145-01A-11D-1753-08	660618	7574034	73621176	519	113644											
MYH2	4620	broad.mit.edu	37	chr17	10431950	10431950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaagtgccctgtgcaaaCtatgatgtgtccataatgca	8	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10431950	A	A	10431950	1	1	122	0	1	0	0	0	0	0	0	0	10129	580	20	3		3	MYH2	17	10431950	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2857916	10431950	70763260	520	113645											
MYH3	4621	broad.mit.edu	37	chr17	10543658	10543658	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accctgctggacctcctctgCaccatcttctggaattccac	6	17	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10543658	G	G	10543658	2	3	122	1	0	0	0	0	0	0	0	1	10130	697	25	4		4	MYH3	17	10543658	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	111708	10543658	70651552	521	113646											
DNAH9	1770	broad.mit.edu	37	chr17	11592948	11592949	+	Nonsense_Mutation	DNP	CC	AA	AA													cgagatccagcagatggaatCcactatggcctccatttctg							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11592949	AA	AA	11592948	4	1	122	1	0	0	0	0	0	1	0	0	4648	855	30	3	3887	3	DNAH9	17	11592948	Nonsense_Mutation	DNP	CC	TCGA-44-6145-01A-11D-1753-08	1049290	11592948	69602262	522	113647											
DNAH9	1770	broad.mit.edu	37	chr17	11827329	11827329	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccacactcactgggcatctCcatccactcttagcttctcc	4	19	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11827329	A	A	11827329	1	1	122	0	1	0	0	0	0	0	0	0	4648	870	30	3		3	DNAH9	17	11827329	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	234381	11827329	69367881	523	113648											
NCOR1	9611	broad.mit.edu	37	chr17	16011523	16011523	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaatccacagaaacTttaatcagagtgtaaactga	5	6	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16011523	A	A	16011523	1	1	122	0	1	0	0	0	0	0	0	0	10330	1624	56	5		5	NCOR1	17	16011523	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	4184194	16011523	65183687	524	113649											
TRPV2	51393	broad.mit.edu	37	chr17	16320923	16320923	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgggaggaagacaggacCcttgacatctccatctgcac	11	12	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16320923	G	G	16320923	1	3	122	0	1	0	0	0	0	0	0	0	16721	638	22	4		4	TRPV2	17	16320923	5'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	309400	16320923	64874287	525	113650											
TOP3A	7156	broad.mit.edu	37	chr17	18196026	18196026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagacttgttcccattgCgtggggtgggaccaccccgc	14	13	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18196026	A	A	18196026	3	1	122	1	0	0	0	0	1	0	0	0	16491	768	27	3	1827	3	TOP3A	17	18196026	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1875103	18196026	62999184	526	113651											
SLC47A2	146802	broad.mit.edu	37	chr17	19611069	19611069	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcctcccacctgcccacgtCtccaggtgcagcttcttcag	9	18	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19611069	G	G	19611069	3	3	122	1	0	0	0	0	1	0	0	0	14762	912	32	4	1023	4	SLC47A2	17	19611069	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1415043	19611069	61584141	527	113652											
BLMH	642	broad.mit.edu	37	chr17	28618575	28618575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaaagagggggaaagggCtgatctggggctcccgcgtc	17	9	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28618575	A	A	28618575	1	1	122	0	1	0	0	0	0	0	0	0	1452	812	28	3		3	BLMH	17	28618575	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	9007506	28618575	52576635	528	113653											
GAS2L2	246176	broad.mit.edu	37	chr17	34072004	34072004	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctttccttcctcctcctCctcacctactgaagctccat	2	20	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34072004	A	A	34072004	4	1	122	1	0	0	0	0	0	1	0	0	6309	864	30	3	134	3	GAS2L2	17	34072004	Nonsense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	5453429	34072004	47123206	529	113654											
MYO19	80179	broad.mit.edu	37	chr17	34881202	34881202	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaggagtgaaaggtcatgtGagggaatgcctgtttttcaa	13	5	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34881202	A	A	34881202	1	1	122	0	1	0	0	0	0	0	0	0	10161	1305	45	4		4	MYO19	17	34881202	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	809198	34881202	46314008	530	113655											
ACACA	31	broad.mit.edu	37	chr17	35454939	35454939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaattagataaacatgCccgtcacactctgtaatgac	6	12	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35454939	A	A	35454939	1	1	122	0	1	0	0	0	0	0	0	0	106	754	26	3		3	ACACA	17	35454939	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	573737	35454939	45740271	531	113656											
ACACA	31	broad.mit.edu	37	chr17	35600210	35600210	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccaaaaagtaaggaggatCcaaataggaaggaatcctac	9	7	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35600210	A	A	35600210	1	1	122	0	1	0	0	0	0	0	0	0	106	870	30	3		3	ACACA	17	35600210	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	145271	35600210	45595000	532	113657											
KRT20	54474	broad.mit.edu	37	chr17	39034618	39034618	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtgctccaaagactctttCtatgagcacaagaaaaatag	8	8	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39034618	A	A	39034618	5	1	122	1	0	0	0	0	0	0	1	0	8529	927	32	3	368	3	KRT20	17	39034618	Splice_Site	SNP	C	TCGA-44-6145-01A-11D-1753-08	3434408	39034618	42160592	533	113658											
KRTAP4-1	85285	broad.mit.edu	37	chr17	39341068	39341068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggccttgatcacagccCtggtcagagcagacagagcc	12	13	2	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39341068	A	A	39341068	3	1	122	1	0	0	0	0	1	0	0	0	8620	680	24	2	352	2	KRTAP4-1	17	39341068	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	306450	39341068	41854142	534	113659											
KRT33A	3883	broad.mit.edu	37	chr17	39502936	39502936	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcgctgtggtggggaagaTtgagagtgtcagagagctgc	17	6	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39502936	A	A	39502936	1	1	122	0	1	0	0	0	0	0	0	0	8540	1508	52	5		5	KRT33A	17	39502936	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	161868	39502936	41692274	535	113660											
AARSD1	80755	broad.mit.edu	37	chr17	41103887	41103887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaccacctttctcatcgcCcacagttaagaacaggaggg	8	14	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41103887	A	A	41103887	3	1	122	1	0	0	0	0	1	0	0	0	21	623	22	2	213	2	AARSD1	17	41103887	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1600951	41103887	40091323	536	113661											
SLC4A1	6521	broad.mit.edu	37	chr17	42334989	42334989	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaggcaggtggtgcggGggacatgacagggtcagtgg	20	7	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42334989	A	A	42334989	1	1	122	0	1	0	0	0	0	0	0	0	14764	1247	43	4		4	SLC4A1	17	42334989	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	1231102	42334989	38860221	537	113662											
SLC4A1	6521	broad.mit.edu	37	chr17	42340241	42340241	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctcctccatggcgtgGtcctgagtgtccagttgtct	12	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42340241	T	T	42340241	1	4	122	0	1	0	0	0	0	0	0	0	14764	1276	44	3		3	SLC4A1	17	42340241	5'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	5252	42340241	38854969	538	113663											
ADAM11	4185	broad.mit.edu	37	chr17	42857163	42857163	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggcacccaccgtctcGgccctgaaccacgaggctgc	11	18	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42857163	T	T	42857163	1	4	122	0	1	0	0	0	0	0	0	0	235	1131	39	1		1	ADAM11	17	42857163	3'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	516922	42857163	38338047	539	113664											
ADAM11	4185	broad.mit.edu	37	chr17	42857179	42857179	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcggccctgaaccacgagGctgcccccatccagccacgg	10	19	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42857179	T	T	42857179	1	4	122	0	1	0	0	0	0	0	0	0	235	1218	42	3		3	ADAM11	17	42857179	3'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	16	42857179	38338031	540	113665											
LRRC46	90506	broad.mit.edu	37	chr17	45913760	45913760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggcagcctgtggtggagCgctggatttcggatgaggag	19	7	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45913760	A	A	45913760	3	1	122	1	0	0	0	0	1	0	0	0	9090	768	27	3	540	3	LRRC46	17	45913760	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3056581	45913760	35281450	541	113666											
HOXB2	3212	broad.mit.edu	37	chr17	46620396	46620396	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtagacggccaaggagcGcgggggtcgaaaggaccggg	19	10	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46620396	T	T	46620396	1	4	122	0	1	0	0	0	0	0	0	0	7368	1102	38	3		3	HOXB2	17	46620396	3'UTR	SNP	G	TCGA-44-6145-01A-11D-1753-08	706636	46620396	34574814	542	113667											
CALCOCO2	10241	broad.mit.edu	37	chr17	46928280	46928281	+	Intron	DEL	AA	-	-													atagagtgagacactgtcttAaaaaaaaaaaaaaaagaaca					rs10553497		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46928281	-	-	46928280	6	5	122	0	1	1	0	1	0	0	0	0	2604	377	13	0		0	CALCOCO2	17	46928280	Intron	DEL	AA	TCGA-44-6145-01A-11D-1753-08	307884	46928280	34266930	543	113668											
PPM1E	22843	broad.mit.edu	37	chr17	57050271	57050271	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaatggaagtctgtcgGtttccagagctattggtagg	16	5	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57050271	C	C	57050271	3	2	122	1	0	0	0	0	1	0	0	0	12439	1261	44	4	1217	4	PPM1E	17	57050271	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	10121991	57050271	24144939	544	113669											
CA4	762	broad.mit.edu	37	chr17	58234889	58234889	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggtccgacttgccatatAagggctcggagcacagcctc	11	13	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58234889	T	T	58234889	4	4	122	1	0	0	0	0	0	1	0	0	2544	363	13	5	384	5	CA4	17	58234889	Nonsense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	1184618	58234889	22960321	545	113670											
USP32	84669	broad.mit.edu	37	chr17	58289532	58289533	+	Intron	INS	-	A	A													ttcgattgctttttttttttINSaaagacatcttattcctaaa							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58289533	A	A	58289532	6	5	122	0	1	1	1	0	0	0	0	0	17190	1769	61	0		0	USP32	17	58289532	Intron	INS	-	TCGA-44-6145-01A-11D-1753-08	54643	58289532	22905678	546	113671											
BRIP1	83990	broad.mit.edu	37	chr17	59821655	59821655	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaaaagaatttctttaccCaatttattttcttttcactc	1	8	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59821655	T	T	59821655	1	4	122	0	1	0	0	0	0	0	0	0	1523	609	21	4		4	BRIP1	17	59821655	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1532123	59821655	21373555	547	113672											
MRC2	9902	broad.mit.edu	37	chr17	60754845	60754845	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaactccggtattgctatAaggtagggcagcctgttggc	12	10	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60754845	T	T	60754845	4	4	122	1	0	0	0	0	0	1	0	0	9852	363	13	5	2096	5	MRC2	17	60754845	Nonsense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	933190	60754845	20440365	548	113673											
GH2	2689	broad.mit.edu	37	chr17	61958500	61958500	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctccttcaggatataGgcttcttcctaggagaagga	10	9	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958500	T	T	61958500	2	4	122	1	0	0	0	0	0	0	0	1	6432	987	35	2		2	GH2	17	61958500	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	1203655	61958500	19236710	549	113674											
HELZ	9931	broad.mit.edu	37	chr17	65221064	65221064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacttgagtgcgttgagcCcaaacagatctaagagaatg	11	7	1	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65221064	A	A	65221064	1	1	122	0	1	0	0	0	0	0	0	0	7116	638	22	2		2	HELZ	17	65221064	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	3262564	65221064	15974146	550	113675											
SDK2	54549	broad.mit.edu	37	chr17	71410748	71410748	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccctccagaagatcttaGggcctcctcttgggtgagga	11	13	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71410748	A	A	71410748	1	1	122	0	1	0	0	0	0	0	0	0	14082	1015	35	4		4	SDK2	17	71410748	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	6189684	71410748	9784462	551	113676											
RECQL5	9400	broad.mit.edu	37	chr17	73656959	73656959	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggagcacatgcacctggtCctttgggcacagcactaggc	12	12	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73656959	A	A	73656959	1	1	122	0	1	0	0	0	0	0	0	0	13311	870	30	3		3	RECQL5	17	73656959	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2246211	73656959	7538251	552	113677											
QRICH2	84074	broad.mit.edu	37	chr17	74288678	74288678	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatctgcaccagattgtacCaaaccatgctgatctgcacc	7	13	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74288678	T	T	74288678	2	4	122	1	0	0	0	0	0	0	0	1	12988	593	21	4		4	QRICH2	17	74288678	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	631719	74288678	6906532	553	113678											
SPHK1	8877	broad.mit.edu	37	chr17	74383634	74383634	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccgcccagctggaagccCcagcagatgccaccgccaga	10	20	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74383634	G	G	74383634	2	3	122	1	0	0	0	0	0	0	0	1	15164	610	22	4		4	SPHK1	17	74383634	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	94956	74383634	6811576	554	113679											
ANKRD12	23253	broad.mit.edu	37	chr18	9257679	9257679	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttatccctgcgccagactGaactgccaggaaactcttgt	8	12	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9257679	T	T	9257679	4	4	122	1	0	0	0	0	0	1	0	0	640	1291	45	3	4444	3	ANKRD12	18	9257679	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08		9257679	68819569	555	113680											
B4GALT6	9331	broad.mit.edu	37	chr18	29205560	29205560	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattgtggtctaccttgcCacgacagccacttcttttaa	7	12	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29205560	A	A	29205560	1	1	122	0	1	0	0	0	0	0	0	0	1280	609	21	2		2	B4GALT6	18	29205560	3'UTR	SNP	C	TCGA-44-6145-01A-11D-1753-08	19947881	29205560	48871688	556	113681											
C18orf25	147339	broad.mit.edu	37	chr18	43796479	43796479	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtaccagtgatagtgacctGacttgtgactcaagcacgag	11	9	1	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43796479	T	T	43796479	2	4	122	1	0	0	0	0	0	0	0	1	1917	1277	45	3		3	C18orf25	18	43796479	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	14590919	43796479	34280769	557	113682											
MYO5B	4645	broad.mit.edu	37	chr18	47390574	47390574	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcctgaggatgagcacCtcctccttgcgcacctcgag	12	14	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47390574	G	G	47390574	3	3	122	1	0	0	0	0	1	0	0	0	10173	680	24	4	1818	4	MYO5B	18	47390574	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3594095	47390574	30686674	558	113683											
DCC	1630	broad.mit.edu	37	chr18	50705278	50705278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcacatcaaatacagatttTggctgaaggtattctttttg	8	6	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50705278	C	C	50705278	1	2	122	0	1	0	0	0	0	0	0	0	4315	1827	63	5		5	DCC	18	50705278	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	3314704	50705278	27371970	559	113684											
NEDD4L	23327	broad.mit.edu	37	chr18	56063337	56063337	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactcaaacctcatgccctAttaaccagatcgaggaagtg	7	11	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56063337	G	G	56063337	1	3	122	0	1	0	0	0	0	0	0	0	10406	464	16	5		5	NEDD4L	18	56063337	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	5358059	56063337	22013911	560	113685											
CDH20	28316	broad.mit.edu	37	chr18	59217255	59217255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtctggtttccggcagCaggagcagagtgtctttcac	15	9	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59217255	A	A	59217255	3	1	122	1	0	0	0	0	1	0	0	0	3136	711	25	3	1731	3	CDH20	18	59217255	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3153918	59217255	18859993	561	113686											
NETO1	81832	broad.mit.edu	37	chr18	70451042	70451042	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgctacagaacttagcttTcaaatcctccacggaactgc	7	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70451042	A	A	70451042	4	1	122	1	0	0	0	0	0	1	0	0	10434	1792	62	5	878	5	NETO1	18	70451042	Nonsense_Mutation	SNP	T	TCGA-44-6145-01A-11D-1753-08	11233787	70451042	7626206	562	113687											
ATP9B	374868	broad.mit.edu	37	chr18	77133995	77133995	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgatcctgaccgagctgctGatggtggcgctgaccgtccg	14	13	0	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77133995	T	T	77133995	2	4	122	1	0	0	0	0	0	0	0	1	1203	1277	45	3		3	ATP9B	18	77133995	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	6682953	77133995	943253	563	113688											
STK11	6794	broad.mit.edu	37	chr19	1220721	1220721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctggggtcaccctgtaaGtgccccgcccccccgggcac	13	19	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220721	T	T	1220721	1	4	122	0	1	0	0	0	0	0	0	0	15405	1044	36	3		3	STK11	19	1220721	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08		1220721	57908262	564	113689											
NFIC	4782	broad.mit.edu	37	chr19	3452574	3452574	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctacttcccccacacggcCatccgctacccacctcatct	3	22	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3452574	T	T	3452574	2	4	122	1	0	0	0	0	0	0	0	1	10467	581	21	4		4	NFIC	19	3452574	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	2231853	3452574	55676409	565	113690											
DAPK3	1613	broad.mit.edu	37	chr19	3964952	3964952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtactccttgcccgtgcCcttctgccggcacttccgca	9	18	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3964952	A	A	3964952	3	1	122	1	0	0	0	0	1	0	0	0	4270	623	22	2	1292	2	DAPK3	19	3964952	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	512378	3964952	55164031	566	113691											
CRB3	92359	broad.mit.edu	37	chr19	6465513	6465513	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatgggcggggatgggagaGaaagatggagactgagttat	19	2	0	5			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6465513	C	C	6465513	1	2	122	0	1	0	0	0	0	0	0	0	3882	957	33	4		4	CRB3	19	6465513	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2500561	6465513	52663470	567	113692											
MUC16	94025	broad.mit.edu	37	chr19	9061893	9061893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggtccctgaccaaaagGttgttgttgaggtgtccaag	14	7	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9061893	T	T	9061893	3	4	122	1	0	0	0	0	1	0	0	0	10067	1261	44	3	18298	3	MUC16	19	9061893	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2596380	9061893	50067090	568	113693											
MUC16	94025	broad.mit.edu	37	chr19	9090511	9090511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaagtggagtcatagatGtattcaaagttccttctgtt	8	7	4	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9090511	T	T	9090511	3	4	122	1	0	0	0	0	1	0	0	0	10067	1377	48	3	42555	3	MUC16	19	9090511	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	28618	9090511	50038472	569	113694											
MAST1	22983	broad.mit.edu	37	chr19	12951814	12951814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcataggcagcagtcCcctggacagcccccgaaact	8	16	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12951814	G	G	12951814	3	3	122	1	0	0	0	0	1	0	0	0	9416	623	22	4	192	4	MAST1	19	12951814	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3861303	12951814	46177169	570	113695											
C19orf44	84167	broad.mit.edu	37	chr19	16620132	16620132	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagccccgtggacatgcCgtactgaagacgccacagtt	11	14	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16620132	T	T	16620132	1	4	122	0	1	0	0	0	0	0	0	0	1946	667	23	4		4	C19orf44	19	16620132	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	3668318	16620132	42508851	571	113696											
ABHD8	79575	broad.mit.edu	37	chr19	17405449	17405449	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgcctgggttcgccaggGccaggatcacggtctttggg	16	10	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17405449	C	C	17405449	1	2	122	0	1	0	0	0	0	0	0	0	87	1218	42	4		4	ABHD8	19	17405449	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	785317	17405449	41723534	572	113697											
ELL	8178	broad.mit.edu	37	chr19	18561235	18561235	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccatgagggtgaggcgggTgtggggccagtacttagagc	18	9	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18561235	G	G	18561235	1	3	122	0	1	0	0	0	0	0	0	0	5104	1711	59	5		5	ELL	19	18561235	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	1155786	18561235	40567748	573	113698											
ZNF208	7757	broad.mit.edu	37	chr19	22156079	22156079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggttaaaagctttgccaCattcttcacatttgtagggt	8	7	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22156079	A	A	22156079	3	1	122	1	0	0	0	0	1	0	0	0	17892	478	17	3	2089	3	ZNF208	19	22156079	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3594844	22156079	36972904	574	113699											
ZNF781	163115	broad.mit.edu	37	chr19	38184276	38184276	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcccggtggccctcttcCatcgtcatcgtatctgaaat	8	13	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38184276	A	A	38184276	1	1	122	0	1	0	0	0	0	0	0	0	18283	609	21	2		2	ZNF781	19	38184276	5'Flank	SNP	C	TCGA-44-6145-01A-11D-1753-08	16028197	38184276	20944707	575	113700											
SIPA1L3	23094	broad.mit.edu	37	chr19	38621383	38621383	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgtgaaggtggtcatcatCccgccttttgaggacggcac	12	11	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38621383	A	A	38621383	2	1	122	1	0	0	0	0	0	0	0	1	14444	845	30	3		3	SIPA1L3	19	38621383	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	437107	38621383	20507600	576	113701											
KCNK6	9424	broad.mit.edu	37	chr19	38817960	38817960	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcggatgaggacgatcggGtggacatcctgggcccccag	16	11	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38817960	T	T	38817960	3	4	122	1	0	0	0	0	1	0	0	0	8140	1261	44	3	869	3	KCNK6	19	38817960	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	196577	38817960	20311023	577	113702											
PAK4	10298	broad.mit.edu	37	chr19	39660361	39660361	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaagcccctcgtcgacccCgcctgcatcacctccatcca	5	23	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39660361	T	T	39660361	2	4	122	1	0	0	0	0	0	0	0	1	11497	639	23	4		4	PAK4	19	39660361	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	842401	39660361	19468622	578	113703											
IL29	282618	broad.mit.edu	37	chr19	39788642	39788642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttggaggctgagctggcCctgacgctgaaggtcctgga	16	11	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39788642	A	A	39788642	2	1	122	1	0	0	0	0	0	0	0	1	7755	610	22	2		2	IL29	19	39788642	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	128281	39788642	19340341	579	113704											
SPTBN4	57731	broad.mit.edu	37	chr19	41063082	41063082	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggacggactgaacgagGcctgggctgagctgctggag	19	8	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41063082	A	A	41063082	3	1	122	1	0	0	0	0	1	0	0	0	15239	1203	42	4	5541	4	SPTBN4	19	41063082	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1274440	41063082	18065901	580	113705											
PSG3	5671	broad.mit.edu	37	chr19	43227993	43227993	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaggagttagtggaggaagGaggagatccagtcccagata	16	6	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43227993	T	T	43227993	1	4	122	0	1	0	0	0	0	0	0	0	12762	1189	41	3		3	PSG3	19	43227993	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	2164911	43227993	15900990	581	113706											
PSG6	5675	broad.mit.edu	37	chr19	43523265	43523265	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcctccaaaggcatttttCaatcagaattggcatttgcc	6	10	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43523265	T	T	43523265	1	4	122	0	1	0	0	0	0	0	0	0	12765	841	29	4		4	PSG6	19	43523265	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	295272	43523265	15605718	582	113707											
PSG5	5673	broad.mit.edu	37	chr19	43674428	43674428	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcctcttgggaaattgatGggagatgattatattcttgc	10	5	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43674428	A	A	43674428	1	1	122	0	1	0	0	0	0	0	0	0	12764	1363	47	4		4	PSG5	19	43674428	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	151163	43674428	15454555	583	113708											
RASIP1	54922	broad.mit.edu	37	chr19	49243435	49243435	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgggccagcgccgcccCagcttcgccagctgcttcct	12	19	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49243435	T	T	49243435	2	4	122	1	0	0	0	0	0	0	0	1	13186	581	21	4		4	RASIP1	19	49243435	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	5569007	49243435	9885548	584	113709											
SYT3	84258	broad.mit.edu	37	chr19	51135639	51135639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagcaacccagagcctgctCccccctcagagggcagctca	11	17	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51135639	A	A	51135639	3	1	122	1	0	0	0	0	1	0	0	0	15594	855	30	3	1222	3	SYT3	19	51135639	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	1892204	51135639	7993344	585	113710											
SIGLEC7	27036	broad.mit.edu	37	chr19	51648281	51648281	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctcagggcagggccaggtCcctcctcatcctggactcac	11	16	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51648281	A	A	51648281	1	1	122	0	1	0	0	0	0	0	0	0	14426	870	30	3		3	SIGLEC7	19	51648281	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	512642	51648281	7480702	586	113711											
SIGLEC8	27181	broad.mit.edu	37	chr19	51960764	51960764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcacacctgtcccaggCaaggtcacctgacaggtgag	13	12	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51960764	A	A	51960764	3	1	122	1	0	0	0	0	1	0	0	0	14427	709	25	3	839	3	SIGLEC8	19	51960764	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	312483	51960764	7168219	587	113712											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52149086	52149086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcacctgagctccttggcGtttcacctgacaggtgaggt	13	11	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52149086	A	A	52149086	3	1	122	1	0	0	0	0	1	0	0	0	14422	1145	40	4	561	4	SIGLEC14	19	52149086	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	188322	52149086	6979897	588	113713											
ZNF534	147658	broad.mit.edu	37	chr19	52941035	52941035	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaacaagtcacttaaaaatCaacatggattaactcttcag	5	8	4	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52941035	T	T	52941035	4	4	122	1	0	0	0	0	0	1	0	0	18100	827	29	4	375	4	ZNF534	19	52941035	Nonsense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	791949	52941035	6187948	589	113714											
ZNF347	84671	broad.mit.edu	37	chr19	53643937	53643937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggacactaaaggctttcCcacactgattacactcatat	5	12	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53643937	A	A	53643937	3	1	122	1	0	0	0	0	1	0	0	0	17987	623	22	2	379	2	ZNF347	19	53643937	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	702902	53643937	5485046	590	113715											
ZNF765	91661	broad.mit.edu	37	chr19	53905144	53905144	+	Intron	DEL	G	-	-													acctttaaaaaaaaaaaaaaGaactttagtaaacacaactg							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53905144	-	-	53905144	6	5	122	0	1	1	0	1	0	0	0	0	18268	957	33	0		0	ZNF765	19	53905144	Intron	DEL	G	TCGA-44-6145-01A-11D-1753-08	261207	53905144	5223839	591	113716											
VSTM1	284415	broad.mit.edu	37	chr19	54561905	54561905	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgattaaaggaaaaggtcatGaagcgtgggatgcaggaata	14	4	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54561905	A	A	54561905	1	1	122	0	1	0	0	0	0	0	0	0	17355	1305	45	4		4	VSTM1	19	54561905	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	656761	54561905	4567078	592	113717											
LILRA4	23547	broad.mit.edu	37	chr19	54849250	54849250	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgggttccgaccacacGtatggggtgttgttttcata	11	9	2	0	rs149766788	byFrequency	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54849250	T	T	54849250	4	4	122	1	0	0	0	0	0	1	0	0	8859	1140	40	3	907	3	LILRA4	19	54849250	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	287345	54849250	4279733	593	113718											
LAIR1	3903	broad.mit.edu	37	chr19	54875801	54875801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctagggtatatttaaaGggatctctccaggccctcta	8	10	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54875801	T	T	54875801	1	4	122	0	1	0	0	0	0	0	0	0	8674	1015	35	2		2	LAIR1	19	54875801	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	26551	54875801	4253182	594	113719											
LILRA2	11027	broad.mit.edu	37	chr19	55086241	55086241	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagctctgcccagccctgtGgtgaccttaggagggaacgt	13	12	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55086241	C	C	55086241	2	2	122	1	0	0	0	0	0	0	0	1	8857	1335	47	4		4	LILRA2	19	55086241	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	210440	55086241	4042742	595	113720											
LILRA1	11024	broad.mit.edu	37	chr19	55107774	55107774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttccttctgaccaaggCgggagcagctgatgcccccc	10	16	1	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55107774	A	A	55107774	3	1	122	1	0	0	0	0	1	0	0	0	8856	768	27	3	1101	3	LILRA1	19	55107774	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	21533	55107774	4021209	596	113721											
LILRB4	11006	broad.mit.edu	37	chr19	55175419	55175419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatgacagaggactatgCagggagataccgctgttact	11	9	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55175419	A	A	55175419	3	1	122	1	0	0	0	0	1	0	0	0	8865	710	25	3	288	3	LILRB4	19	55175419	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	67645	55175419	3953564	597	113722											
KIR2DL1	3802	broad.mit.edu	37	chr19	55283152	55283152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtcattcttatcttggGtttaacaacttcagtctgta	7	8	5	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55283152	T	T	55283152	1	4	122	0	1	0	0	0	0	0	0	0	8387	1276	44	3		3	KIR2DL1	19	55283152	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	107733	55283152	3845831	598	113723											
KIR3DL1	3811	broad.mit.edu	37	chr19	55344334	55344334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatatgggcctggaggtGgagttatgggcctggagtgg	21	4	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55344334	T	T	55344334	1	4	122	0	1	0	0	0	0	0	0	0	8391	1363	47	2		2	KIR3DL1	19	55344334	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	61182	55344334	3784649	599	113724											
FCAR	2204	broad.mit.edu	37	chr19	55385836	55385836	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagagaaatcccaaaataatCagggtgtctcttaacagtgt	8	7	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55385836	A	A	55385836	1	1	122	0	1	0	0	0	0	0	0	0	5830	841	29	3		3	FCAR	19	55385836	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	41502	55385836	3743147	600	113725											
BRSK1	84446	broad.mit.edu	37	chr19	55805585	55805585	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctctctccctcaggtcCccccattatgcgtgtccaga	7	17	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55805585	A	A	55805585	2	1	122	1	0	0	0	0	0	0	0	1	1532	610	22	2		2	BRSK1	19	55805585	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	419749	55805585	3323398	601	113726											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701647	56701647	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggccttggcttcttggCcatctgggtgactgaccggg	16	11	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56701647	T	T	56701647	3	4	122	1	0	0	0	0	1	0	0	0	18368	739	26	4	454	4	ZSCAN5B	19	56701647	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	896062	56701647	2427336	602	113727											
ZNF805	390980	broad.mit.edu	37	chr19	57765064	57765064	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttataagtgcagtgaatgtGgaaaggccttcacccaccgc	10	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57765064	T	T	57765064	4	4	122	1	0	0	0	0	0	1	0	0	18301	1349	47	2	891	2	ZNF805	19	57765064	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	1063417	57765064	1363919	603	113728											
ZNF548	147694	broad.mit.edu	37	chr19	57910758	57910758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaggccttatgagtgcaGtgtatgtggggaattgttta	14	3	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57910758	T	T	57910758	3	4	122	1	0	0	0	0	1	0	0	0	18107	1029	36	3	1153	3	ZNF548	19	57910758	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	145694	57910758	1218225	604	113729											
ZIK1	284307	broad.mit.edu	37	chr19	58101972	58101972	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagtccatactggagaaAggccttgggagtgcaatgaa	14	6	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58101972	G	G	58101972	3	3	122	1	0	0	0	0	1	0	0	0	17809	63	3	5	807	5	ZIK1	19	58101972	Missense_Mutation	SNP	A	TCGA-44-6145-01A-11D-1753-08	191214	58101972	1027011	605	113730											
ZNF211	10520	broad.mit.edu	37	chr19	58145375	58145375	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcacattcctctgaggcCtgcgtctttccacaggttcc	8	14	3	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58145375	T	T	58145375	1	4	122	0	1	0	0	0	0	0	0	0	17893	696	24	4		4	ZNF211	19	58145375	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	43403	58145375	983608	606	113731											
ZNF551	90233	broad.mit.edu	37	chr19	58196642	58196642	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgacagggtatgacctttGaggatgtggccatttatttc	12	6	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58196642	T	T	58196642	4	4	122	1	0	0	0	0	0	1	0	0	18110	1291	45	3	52	3	ZNF551	19	58196642	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	51267	58196642	932341	607	113732											
SIRPG	55423	broad.mit.edu	37	chr20	1617081	1617081	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagccatgggactcacaGgtgaaactcactgtatgctc	11	10	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1617081	T	T	1617081	2	4	122	1	0	0	0	0	0	0	0	1	14449	987	35	2		2	SIRPG	20	1617081	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08		1617081	61408439	608	113733											
PTPRA	5786	broad.mit.edu	37	chr20	3018722	3018722	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaacagtatgagttctgCtacaaggtggtgcaggagta	14	6	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3018722	T	T	3018722	2	4	122	1	0	0	0	0	0	0	0	1	12903	805	28	4		4	PTPRA	20	3018722	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	1401641	3018722	60006798	609	113734											
PLCB4	5332	broad.mit.edu	37	chr20	9459613	9459613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattggaagccgagatggacCgcagaccagcaacagtagta	12	9	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9459613	A	A	9459613	3	1	122	1	0	0	0	0	1	0	0	0	12125	652	23	1	3724	1	PLCB4	20	9459613	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	6440891	9459613	53565907	610	113735											
OTOR	56914	broad.mit.edu	37	chr20	16729471	16729471	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttactgttataaaattcAggagcctaaaatgtaatcat	5	6	2	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16729471	T	T	16729471	1	4	122	0	1	0	0	0	0	0	0	0	11402	203	7	5		5	OTOR	20	16729471	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	7269858	16729471	46296049	611	113736											
C20orf114	92747	broad.mit.edu	37	chr20	31891747	31891747	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgagaacaatggggcctgGgcttctcttgttgcaggaag	14	8	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31891747	C	C	31891747	1	2	122	0	1	0	0	0	0	0	0	0	2104	1247	43	4		4	C20orf114	20	31891747	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	15162276	31891747	31133773	612	113737											
CHD6	84181	broad.mit.edu	37	chr20	40127915	40127915	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctaatgatataaaagcTagaaacatgagccaccaacc	7	9	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40127915	C	C	40127915	1	2	122	0	1	0	0	0	0	0	0	0	3360	1537	53	5		5	CHD6	20	40127915	Intron	SNP	T	TCGA-44-6145-01A-11D-1753-08	8236168	40127915	22897605	613	113738											
GDAP1L1	78997	broad.mit.edu	37	chr20	42893134	42893134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctgaagaagatcctcgGggaactggccatggtgctgg	14	10	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42893134	T	T	42893134	3	4	122	1	0	0	0	0	1	0	0	0	6371	1232	43	2	713	2	GDAP1L1	20	42893134	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2765219	42893134	20132386	614	113739											
MMP9	4318	broad.mit.edu	37	chr20	44639750	44639750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccactcatcacccgcCgccctaactccggtcccccc	4	25	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44639750	A	A	44639750	1	1	122	0	1	0	0	0	0	0	0	0	9763	667	23	1		1	MMP9	20	44639750	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	1746616	44639750	18385770	615	113740											
KCNB1	3745	broad.mit.edu	37	chr20	47989564	47989564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgggctcctccccctgGcaacacacggacgtcagggg	12	16	1	0	rs35831424		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47989564	T	T	47989564	3	4	122	1	0	0	0	0	1	0	0	0	8082	1203	42	3	47	3	KCNB1	20	47989564	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	3349814	47989564	15035956	616	113741											
GNAS	2778	broad.mit.edu	37	chr20	57478684	57478684	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcttgtagcgccctccCagccagtgctgttccctgac	9	16	2	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57478684	T	T	57478684	1	4	122	0	1	0	0	0	0	0	0	0	6574	609	21	4		4	GNAS	20	57478684	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	9489120	57478684	5546836	617	113742											
ZNF831	128611	broad.mit.edu	37	chr20	57768948	57768948	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaccactgcccattccctgGggaccaaggcacagccagga	10	15	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57768948	C	C	57768948	3	2	122	1	0	0	0	0	1	0	0	0	18314	1241	43	4	2876	4	ZNF831	20	57768948	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	290264	57768948	5256572	618	113743											
C20orf135	140701	broad.mit.edu	37	chr20	62493424	62493424	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgcctcgtcatctgctgCgaaggcaacgcgggcttcta	12	15	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62493424	G	G	62493424	3	3	122	1	0	0	0	0	1	0	0	0	2110	776	27	4	533	4	C20orf135	20	62493424	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	4724476	62493424	532096	619	113744											
MYT1	4661	broad.mit.edu	37	chr20	62836349	62836349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctctgagatctgagccCatcgcctgatgtggccttgc	12	13	2	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62836349	A	A	62836349	1	1	122	0	1	0	0	0	0	0	0	0	10200	609	21	2		2	MYT1	20	62836349	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	342925	62836349	189171	620	113745											
MYT1	4661	broad.mit.edu	37	chr20	62839561	62839561	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaatcacccagtcccaagCctgagtactctgttattgtg	8	12	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62839561	T	T	62839561	3	4	122	1	0	0	0	0	1	0	0	0	10200	739	26	4	1030	4	MYT1	20	62839561	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3212	62839561	185959	621	113746											
BAGE2	85319	broad.mit.edu	37	chr21	11047681	11047681	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgaaaatcatcagtcctggGaaccgcacagttcataaata	7	9	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11047681	C	C	11047681	1	2	122	0	1	0	0	0	0	0	0	0	1297	1189	41	4		4	BAGE2	21	11047681	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08		11047681	37082214	622	113747											
KRTAP8-1	337879	broad.mit.edu	37	chr21	32185358	32185358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagccaatcagtagagagCaaatggcgagtatctcctgt	10	9	3	1	rs140820436	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32185358	A	A	32185358	3	1	122	1	0	0	0	0	1	0	0	0	8644	710	25	3	14	3	KRTAP8-1	21	32185358	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	21137677	32185358	15944537	623	113748											
SUMO3	6612	broad.mit.edu	37	chr21	46229076	46229076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attagtctcactggcaagccCtggaaaggaaaagcagtggc	12	9	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46229076	T	T	46229076	1	4	122	0	1	0	0	0	0	0	0	0	15507	696	24	4		4	SUMO3	21	46229076	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	14043718	46229076	1900819	624	113749											
DGCR2	9993	broad.mit.edu	37	chr22	19029328	19029328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagggcacttacagtttgctCcaatcagggactcgatgcgc	12	11	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19029328	A	A	19029328	3	1	122	1	0	0	0	0	1	0	0	0	4501	855	30	3	513	3	DGCR2	22	19029328	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08		19029328	32275238	625	113750											
PI4KA	5297	broad.mit.edu	37	chr22	21068880	21068880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacttcgcacgcggacgCgtggaagtgggggatgggta	17	7	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21068880	A	A	21068880	1	1	122	0	1	0	0	0	0	0	0	0	11968	783	27	3		3	PI4KA	22	21068880	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2039552	21068880	30235686	626	113751											
MTP18	51537	broad.mit.edu	37	chr22	30823048	30823048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgtaccccactcctggGtgcggacaagtccactggcc	11	15	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30823048	T	T	30823048	1	4	122	0	1	0	0	0	0	0	0	0	10049	1276	44	3		3	MTP18	22	30823048	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	9754168	30823048	20481518	627	113752											
GRAP2	9402	broad.mit.edu	37	chr22	40366981	40366981	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctggggttccacagcgggGaggtggtggaggtcctggat	20	7	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40366981	T	T	40366981	4	4	122	1	0	0	0	0	0	1	0	0	6820	1175	41	3	912	3	GRAP2	22	40366981	Nonsense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	9543933	40366981	10937585	628	113753											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45197947	45197947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaggctcacctgtgtctGctcctccaggggatgaccgc	12	14	2	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45197947	T	T	45197947	1	4	122	0	1	0	0	0	0	0	0	0	12707	1334	46	3		3	PRR5-ARHGAP8	22	45197947	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	4830966	45197947	6106619	629	113754											
CLCN4	1183	broad.mit.edu	37	chrX	10153244	10153244	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcattccgaaaggacacactGcaaatggctaagccatgttt	9	10	0	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10153244	C	C	10153244	1	2	122	0	1	0	0	0	0	0	0	0	3496	1334	46	4		4	CLCN4	23	10153244	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08		10153244	145117316	630	113755											
FRMPD4	9758	broad.mit.edu	37	chrX	12701488	12701488	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccttgaatcggacatgCaccaagcattttatttttaa	6	8	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12701488	A	A	12701488	1	1	122	0	1	0	0	0	0	0	0	0	6119	725	25	3		3	FRMPD4	23	12701488	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	2548244	12701488	142569072	631	113756											
FRMPD4	9758	broad.mit.edu	37	chrX	12708435	12708435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcttcatgaacaggagaCtctaactcaggtctgtgaaa	9	9	4	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12708435	A	A	12708435	3	1	122	1	0	0	0	0	1	0	0	0	6119	565	20	3	833	3	FRMPD4	23	12708435	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	6947	12708435	142562125	632	113757											
TMEM27	57393	broad.mit.edu	37	chrX	15657907	15657907	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgataattaaaaataaAcaaaataagacagaaaaaaa	4	3	0	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15657907	G	G	15657907	1	3	122	0	1	0	0	0	0	0	0	0	16275	58	2	5		5	TMEM27	23	15657907	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	2949472	15657907	139612653	633	113758											
RAI2	10742	broad.mit.edu	37	chrX	17818841	17818842	+	Missense_Mutation	DNP	CA	AT	AT													gccgcctgggactcgcccacCatctcaatgttattttcagc							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	17818842	AT	AT	17818841	3	1	122	1	0	0	0	0	1	0	0	0	13117	594	21	2	306	2	RAI2	23	17818841	Missense_Mutation	DNP	CA	TCGA-44-6145-01A-11D-1753-08	2160934	17818841	137451719	634	113759											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29973175	29973175	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actaggactttctggaccaaAttttccattcactcattttg	5	10	3	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29973175	G	G	29973175	1	3	122	0	1	0	0	0	0	0	0	0	7731	116	4	5		5	IL1RAPL1	23	29973175	Intron	SNP	A	TCGA-44-6145-01A-11D-1753-08	12154334	29973175	125297385	635	113760											
DMD	1756	broad.mit.edu	37	chrX	32503071	32503071	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctctggcctgcacatcaGaaaagacttgcttaaaatga	7	10	3	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32503071	T	T	32503071	3	4	122	1	0	0	0	0	1	0	0	0	4620	942	33	3	8768	3	DMD	23	32503071	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	2529896	32503071	122767489	636	113761											
DMD	1756	broad.mit.edu	37	chrX	32509365	32509365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatacctattgattatgCtccaaatggaaggagaagag	10	5	0	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32509365	A	A	32509365	1	1	122	0	1	0	0	0	0	0	0	0	4620	812	28	3		3	DMD	23	32509365	Intron	SNP	C	TCGA-44-6145-01A-11D-1753-08	6294	32509365	122761195	637	113762											
FAM47C	442444	broad.mit.edu	37	chrX	37026894	37026894	+	Frame_Shift_Del	DEL	G	-	-													ttggccatgtaccccaatctGggagaagatatgcctccaga							TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37026894	-	-	37026894	7	5	122	1	0	1	0	1	0	0	0	0	5622	1335	47	0	413	0	FAM47C	23	37026894	Frame_Shift_Del	DEL	G	TCGA-44-6145-01A-11D-1753-08	4517529	37026894	118243666	638	113763											
HEPH	9843	broad.mit.edu	37	chrX	65474945	65474945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccaatgactctgcttgtGtttcctggatctattattct	8	10	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65474945	T	T	65474945	3	4	122	1	0	0	0	0	1	0	0	0	7121	1377	48	3	2856	3	HEPH	23	65474945	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	28448051	65474945	89795615	639	113764											
EDA2R	60401	broad.mit.edu	37	chrX	65822556	65822556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtaaacaccactagcaGgctgctcaccagtgcaacaa	9	13	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65822556	T	T	65822556	3	4	122	1	0	0	0	0	1	0	0	0	4944	991	35	2	465	2	EDA2R	23	65822556	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	347611	65822556	89448004	640	113765											
ITGB1BP2	26548	broad.mit.edu	37	chrX	70522111	70522111	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaagctaagctgatctgGgtctcttgttatcagggttg	13	7	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70522111	T	T	70522111	1	4	122	0	1	0	0	0	0	0	0	0	7962	1247	43	2		2	ITGB1BP2	23	70522111	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	4699555	70522111	84748449	641	113766											
KIAA2022	340533	broad.mit.edu	37	chrX	73961404	73961404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgacagagagtggggcCattgaatcaaagctaaagag	14	6	1	4			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73961404	A	A	73961404	3	1	122	1	0	0	0	0	1	0	0	0	8339	594	21	2	1570	2	KIAA2022	23	73961404	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	3439293	73961404	81309156	642	113767											
KIAA2022	340533	broad.mit.edu	37	chrX	73963752	73963752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttctcgtctgtctcctgCccttgacttatgcaggggga	11	11	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73963752	T	T	73963752	3	4	122	1	0	0	0	0	1	0	0	0	8339	739	26	4	3918	4	KIAA2022	23	73963752	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	2348	73963752	81306808	643	113768											
DACH2	117154	broad.mit.edu	37	chrX	85416252	85416252	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtaagccagaagggcatGctcactggtctgcccattct	11	11	3	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85416252	C	C	85416252	1	2	122	0	1	0	0	0	0	0	0	0	4254	1334	46	4		4	DACH2	23	85416252	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	11452500	85416252	69854308	644	113769											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177129	89177129	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagacccaaagcccggtGgaaaaagacagcccggcgaa	13	12	0	2			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177129	T	T	89177129	2	4	122	1	0	0	0	0	0	0	0	1	15950	1335	47	2		2	TGIF2LX	23	89177129	Silent	SNP	G	TCGA-44-6145-01A-11D-1753-08	3760877	89177129	66093431	645	113770											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104440260	104440260	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctacagttatattcgtacCaactatagcacggcccagag	7	11	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104440260	A	A	104440260	2	1	122	1	0	0	0	0	0	0	0	1	7732	581	21	2		2	IL1RAPL2	23	104440260	Silent	SNP	C	TCGA-44-6145-01A-11D-1753-08	15263131	104440260	50830300	646	113771											
RGAG1	57529	broad.mit.edu	37	chrX	109697657	109697657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtctgatgccattctacGgaccaggtttctggaaggac	12	9	3	1	rs34064910	byFrequency	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109697657	T	T	109697657	3	4	122	1	0	0	0	0	1	0	0	0	13382	1116	39	1	3814	1	RGAG1	23	109697657	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	5257397	109697657	45572903	647	113772											
DCX	1641	broad.mit.edu	37	chrX	110573947	110573947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttgcatccatttgaatGgaataatggttgtagctgtg	12	4	0	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110573947	T	T	110573947	1	4	122	0	1	0	0	0	0	0	0	0	4351	1363	47	2		2	DCX	23	110573947	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	876290	110573947	44696613	648	113773											
IGSF1	3547	broad.mit.edu	37	chrX	130409975	130409975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatactgagatatgacccCctgtttgacatggttgtctc	10	10	1	3			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130409975	A	A	130409975	3	1	122	1	0	0	0	0	1	0	0	0	7666	622	22	2	1178	2	IGSF1	23	130409975	Missense_Mutation	SNP	C	TCGA-44-6145-01A-11D-1753-08	19836028	130409975	24860585	649	113774											
MAGEC3	139081	broad.mit.edu	37	chrX	140926218	140926218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtggtgctcccacctcaGccccaggtgtggtagcccat	11	16	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140926218	T	T	140926218	3	4	122	1	0	0	0	0	1	0	0	0	9274	962	34	3	119	3	MAGEC3	23	140926218	Missense_Mutation	SNP	G	TCGA-44-6145-01A-11D-1753-08	10516243	140926218	14344342	650	113775											
FATE1	89885	broad.mit.edu	37	chrX	150890936	150890936	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccaggtctttggtcccgcGgacctggcccagcctcctgc	12	17	1	0			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150890936	C	C	150890936	1	2	122	0	1	0	0	0	0	0	0	0	5750	1131	39	4		4	FATE1	23	150890936	Intron	SNP	G	TCGA-44-6145-01A-11D-1753-08	9964718	150890936	4379624	651	113776											
MAGEA12	4111	broad.mit.edu	37	chrX	151896252	151896252	+	RNA	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagtgttggcccactccattCctcaggtttttttgaagcgg	10	10	1	1			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151896252	T	T	151896252	1	4	122	0	1	0	0	0	0	0	0	0	9254	870	30	4		4	MAGEA12	23	151896252	RNA	SNP	C	TCGA-44-6145-01A-11D-1753-08	1005316	151896252	3374308	652	113777											
CLSPN	63967	broad.mit.edu	37	chr1	36212562	36212562	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgaggcttcaaagcttggtActgattcctgtggtttctaa	10	8	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36212562	G	G	36212562	3	3	123	1	0	0	0	0	1	0	0	0	3592	391	14	5	1404	5	CLSPN	1	36212562	Missense_Mutation	SNP	A	TCGA-44-6146-01A-11D-1753-08		36212562	213038059	1	113778											
RPAP2	79871	broad.mit.edu	37	chr1	92765878	92765878	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttaaaacaataatggttAcctttttttttttagagaaa	4	3	0	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92765878	T	T	92765878	1	4	123	0	1	0	0	0	0	0	0	0	13653	406	14	5		5	RPAP2	1	92765878	Intron	SNP	A	TCGA-44-6146-01A-11D-1753-08	56553316	92765878	156484743	2	113779											
NBPF10	100132406	broad.mit.edu	37	chr1	145816543	145816543	+	Intron	DEL	T	-	-													actgaactattaacacagtgTttttttttttcagttatgag							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145816543	-	-	145816543	6	5	123	0	1	1	0	1	0	0	0	0	10287	1740	60	0		0	NBPF10	1	145816543	Intron	DEL	T	TCGA-44-6146-01A-11D-1753-08	53050665	145816543	103434078	3	113780											
KIFAP3	22920	broad.mit.edu	37	chr1	169961458	169961458	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttatatagcacactcaTgttaatgtactacaacttaa	3	7	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169961458	G	G	169961458	1	3	123	0	1	0	0	0	0	0	0	0	8381	1479	51	5		5	KIFAP3	1	169961458	Intron	SNP	T	TCGA-44-6146-01A-11D-1753-08	24144915	169961458	79289163	4	113781											
ASTN1	460	broad.mit.edu	37	chr1	176998839	176998839	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcgttttctgcctctgTgccagaatccccttcagggt	12	12	3	1	rs140453977		TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176998839	C	C	176998839	3	2	123	1	0	0	0	0	1	0	0	0	1068	1696	59	5	2913	5	ASTN1	1	176998839	Missense_Mutation	SNP	T	TCGA-44-6146-01A-11D-1753-08	7037381	176998839	72251782	5	113782											
HMCN1	83872	broad.mit.edu	37	chr1	185959709	185959709	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataattcacatgtacatctgAgtctacaggaagtatttata	6	6	3	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185959709	T	T	185959709	1	4	123	0	1	0	0	0	0	0	0	0	7287	319	11	5		5	HMCN1	1	185959709	Intron	SNP	A	TCGA-44-6146-01A-11D-1753-08	8960870	185959709	63290912	6	113783											
KCNT2	343450	broad.mit.edu	37	chr1	196438230	196438230	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatgaataaaaacgaaagtCaattatactgcctcctatta	5	7	1	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196438230	A	A	196438230	1	1	123	0	1	0	0	0	0	0	0	0	8162	841	29	3		3	KCNT2	1	196438230	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	10478521	196438230	52812391	7	113784											
LAD1	3898	broad.mit.edu	37	chr1	201355988	201355988	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacccctttcttcctctcTtctggctccctgcccaccaa	5	19	3	0	rs138697867		TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201355988	C	C	201355988	2	2	123	1	0	0	0	0	0	0	0	1	8671	1606	56	5		5	LAD1	1	201355988	Silent	SNP	T	TCGA-44-6146-01A-11D-1753-08	4917758	201355988	47894633	8	113785											
CDC42BPA	8476	broad.mit.edu	37	chr1	227261543	227261543	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttagaaattattctagtgGgactatatgattcaatctta	6	5	3	2	rs79572708	by1000genomes	TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227261543	C	C	227261543	1	2	123	0	1	0	0	0	0	0	0	0	3102	1247	43	4		4	CDC42BPA	1	227261543	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	25905555	227261543	21989078	9	113786											
DISC1	27185	broad.mit.edu	37	chr1	231885726	231885726	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagagaaaatcagcctgcActttcaacttccttcaaggc	6	12	3	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231885726	G	G	231885726	3	3	123	1	0	0	0	0	1	0	0	0	4578	159	6	5	1545	5	DISC1	1	231885726	Missense_Mutation	SNP	A	TCGA-44-6146-01A-11D-1753-08	4624183	231885726	17364895	10	113787											
RYR2	6262	broad.mit.edu	37	chr1	237754106	237754106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggagggctccctggggCtggcctttttgggcccaaga	17	11	0	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237754106	A	A	237754106	3	1	123	1	0	0	0	0	1	0	0	0	13880	797	28	3	4096	3	RYR2	1	237754106	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	5868380	237754106	11496515	11	113788											
RYR2	6262	broad.mit.edu	37	chr1	237829818	237829818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaatgatctaggtttctGtggacgctgcccatggttac	10	10	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237829818	T	T	237829818	3	4	123	1	0	0	0	0	1	0	0	0	13880	1377	48	3	8669	3	RYR2	1	237829818	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	75712	237829818	11420803	12	113789											
AKT3	10000	broad.mit.edu	37	chr1	243715923	243715923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatctcagtgggaagatgtcTacaccaaatacattgcttct	8	9	3	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243715923	C	C	243715923	1	2	123	0	1	0	0	0	0	0	0	0	481	1537	53	5		5	AKT3	1	243715923	Intron	SNP	T	TCGA-44-6146-01A-11D-1753-08	5886105	243715923	5534698	13	113790											
KIDINS220	57498	broad.mit.edu	37	chr2	8926114	8926114	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagccaatgataaaaaggaaGatgacaaaagatgggagaca	11	5	0	5			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8926114	A	A	8926114	2	1	123	1	0	0	0	0	0	0	0	1	8341	932	33	4		4	KIDINS220	2	8926114	Silent	SNP	G	TCGA-44-6146-01A-11D-1753-08		8926114	234273259	14	113791											
REV1	51455	broad.mit.edu	37	chr2	100079005	100079005	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccactaaaaattgtagatGaagtcccatccttctgcata	5	11	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100079005	T	T	100079005	4	4	123	1	0	0	0	0	0	1	0	0	13347	1294	45	3	3705	3	REV1	2	100079005	Nonsense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	91152891	100079005	143120368	15	113792											
MYO7B	4648	broad.mit.edu	37	chr2	128393966	128393966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcccagccccagcaggcCcagcgtcaaccagcacacat	8	19	2	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128393966	A	A	128393966	1	1	123	0	1	0	0	0	0	0	0	0	10177	638	22	2		2	MYO7B	2	128393966	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	28314961	128393966	114805407	16	113793											
NMUR1	10316	broad.mit.edu	37	chr2	232390132	232390132	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgccaaacaccacgaccagGacaactgcagggacagagaa	10	12	0	1	rs138820733		TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232390132	A	A	232390132	2	1	123	1	0	0	0	0	0	0	0	1	10601	1161	41	4		4	NMUR1	2	232390132	Silent	SNP	G	TCGA-44-6146-01A-11D-1753-08	103996166	232390132	10809241	17	113794											
HTR3C	170572	broad.mit.edu	37	chr3	183772489	183772489	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatagagtccctctctcacGgagtctctgctctctatagg	8	12	4	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183772489	C	C	183772489	1	2	123	0	1	0	0	0	0	0	0	0	7516	1131	39	4		4	HTR3C	3	183772489	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08		183772489	14249941	18	113795											
LPP	4026	broad.mit.edu	37	chr3	188477903	188477903	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacccttttttttccaggcCgctgtgctcgctgtggagaa	10	11	0	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188477903	T	T	188477903	3	4	123	1	0	0	0	0	1	0	0	0	9010	652	23	4	1265	4	LPP	3	188477903	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	4705414	188477903	9544527	19	113796											
RFC1	5981	broad.mit.edu	37	chr4	39347146	39347147	+	Intron	INS	-	T	T													aagaagcctatataactatcINSttttttttttttgagacgga							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39347147	T	T	39347146	6	5	123	0	1	1	1	0	0	0	0	0	13352	928	32	0		0	RFC1	4	39347146	Intron	INS	-	TCGA-44-6146-01A-11D-1753-08		39347146	151807130	20	113797											
C4orf37	285555	broad.mit.edu	37	chr4	98947149	98947149	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtgggccagaatgttgcAgaatgttgcagattacatgt	12	5	0	3			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98947149	C	C	98947149	1	2	123	0	1	0	0	0	0	0	0	0	2290	203	7	5		5	C4orf37	4	98947149	Intron	SNP	A	TCGA-44-6146-01A-11D-1753-08	59600003	98947149	92207127	21	113798											
ADH4	127	broad.mit.edu	37	chr4	100062801	100062802	+	Missense_Mutation	DNP	GG	TT	TT													aatttagaatcgataacagtGgcatcagtatggcacagaga							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	100062802	TT	TT	100062801	3	4	123	1	0	0	0	0	1	0	0	0	310	1335	47	2	1017	2	ADH4	4	100062801	Missense_Mutation	DNP	GG	TCGA-44-6146-01A-11D-1753-08	1115652	100062801	91091475	22	113799											
ANK2	287	broad.mit.edu	37	chr4	114253215	114253215	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggggcctcctggaacCaaattccttgggtaggagtg	14	10	0	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114253215	A	A	114253215	2	1	123	1	0	0	0	0	0	0	0	1	621	581	21	2		2	ANK2	4	114253215	Silent	SNP	C	TCGA-44-6146-01A-11D-1753-08	14190414	114253215	76901061	23	113800											
MND1	84057	broad.mit.edu	37	chr4	154318419	154318419	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcacttcgagaccaaAgggaacagctaaaggcagaa	9	9	2	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154318419	T	T	154318419	3	4	123	1	0	0	0	0	1	0	0	0	9769	63	3	5	422	5	MND1	4	154318419	Missense_Mutation	SNP	A	TCGA-44-6146-01A-11D-1753-08	40065204	154318419	36835857	24	113801											
C4orf27	54969	broad.mit.edu	37	chr4	170670110	170670110	+	Intron	DEL	T	-	-													ttttttcctttttggaggccTttttttttttttaatcatac					rs76216708		TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170670110	-	-	170670110	6	5	123	0	1	1	0	1	0	0	0	0	2281	1624	56	0		0	C4orf27	4	170670110	Intron	DEL	T	TCGA-44-6146-01A-11D-1753-08	16351691	170670110	20484166	25	113802											
CDH9	1007	broad.mit.edu	37	chr5	26903857	26903857	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttctgcattttcccccacGtcagggtcattggcttttat	7	11	3	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26903857	A	A	26903857	2	1	123	1	0	0	0	0	0	0	0	1	3147	1136	40	4		4	CDH9	5	26903857	Silent	SNP	G	TCGA-44-6146-01A-11D-1753-08		26903857	154011403	26	113803											
GHR	2690	broad.mit.edu	37	chr5	42467009	42467009	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcaacaagatgggttcTgtggtgtcgcatgaggtgtg	15	5	2	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42467009	C	C	42467009	1	2	123	0	1	0	0	0	0	0	0	0	6435	1595	55	5		5	GHR	5	42467009	Intron	SNP	T	TCGA-44-6146-01A-11D-1753-08	15563152	42467009	138448251	27	113804											
CRHBP	1393	broad.mit.edu	37	chr5	76259097	76259097	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtgaattcatggacccGctgttggtcaaatggtttga	12	6	2	3			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76259097	A	A	76259097	1	1	123	0	1	0	0	0	0	0	0	0	3902	1102	38	4		4	CRHBP	5	76259097	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	33792088	76259097	104656163	28	113805											
RFESD	317671	broad.mit.edu	37	chr5	94991871	94991871	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagcaaaacccaagtggtGctccaaaggaataaagcaaa	8	9	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94991871	A	A	94991871	3	1	123	1	0	0	0	0	1	0	0	0	13357	1319	46	4	509	4	RFESD	5	94991871	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	18732774	94991871	85923389	29	113806											
NKX2-5	1482	broad.mit.edu	37	chr5	172661900	172661900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctctgggaggcccggcgCagccgcctcgggcccagcgt	16	17	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172661900	A	A	172661900	3	1	123	1	0	0	0	0	1	0	0	0	10548	710	25	3	930	3	NKX2-5	5	172661900	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	77670029	172661900	8253360	30	113807											
COL11A2	1302	broad.mit.edu	37	chr6	33141059	33141059	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgtccctgtgggctttccaGacagctctggggttaaaggg	14	10	1	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33141059	T	T	33141059	1	4	123	0	1	0	0	0	0	0	0	0	3700	957	33	3		3	COL11A2	6	33141059	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08		33141059	137974008	31	113808											
UNC5CL	222643	broad.mit.edu	37	chr6	41002476	41002476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcctggagcatcaggcaaCcgccgcggtgatccacctct	10	15	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41002476	A	A	41002476	3	1	123	1	0	0	0	0	1	0	0	0	17120	507	18	3	1250	3	UNC5CL	6	41002476	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	7861417	41002476	130112591	32	113809											
SLC22A7	10864	broad.mit.edu	37	chr6	43266308	43266308	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggaggcccatcttccccGggagcctgatggcacgctca	13	15	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43266308	A	A	43266308	3	1	123	1	0	0	0	0	1	0	0	0	14573	1116	39	4	214	4	SLC22A7	6	43266308	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	2263832	43266308	127848759	33	113810											
CENPQ	55166	broad.mit.edu	37	chr6	49448882	49448882	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattatcatgatgttcttccAgtagtgaatactagatcttg	7	6	3	3			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49448882	G	G	49448882	1	3	123	0	1	0	0	0	0	0	0	0	3271	203	7	5		5	CENPQ	6	49448882	Intron	SNP	A	TCGA-44-6146-01A-11D-1753-08	6182574	49448882	121666185	34	113811											
MAP3K7	6885	broad.mit.edu	37	chr6	91260267	91260267	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcatctgctcctggaaagTactatatataaaaaagtaaa	6	7	2	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91260267	C	C	91260267	3	2	123	1	0	0	0	0	1	0	0	0	9347	1652	57	5	987	5	MAP3K7	6	91260267	Missense_Mutation	SNP	T	TCGA-44-6146-01A-11D-1753-08	41811385	91260267	79854800	35	113812											
C6orf35	729515	broad.mit.edu	37	chr6	157720783	157720783	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcactaggctggagtttgCtgtgacaaggtaatctttgc	11	7	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157720783	T	T	157720783	1	4	123	0	1	0	0	0	0	0	0	0	2386	812	28	4		4	C6orf35	6	157720783	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	66460516	157720783	13394284	36	113813											
PRSS37	136242	broad.mit.edu	37	chr7	141537978	141537978	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattgctaagatactgaatgTtacaaagtgccaggaactgt	9	7	0	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141537978	A	A	141537978	1	1	123	0	1	0	0	0	0	0	0	0	12732	1740	60	5		5	PRSS37	7	141537978	Intron	SNP	T	TCGA-44-6146-01A-11D-1753-08		141537978	17600685	37	113814											
CLN8	2055	broad.mit.edu	37	chr8	1719548	1719548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggtttcacatcacgacaGcaacgggattcttttgcttt	9	10	3	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1719548	A	A	1719548	3	1	123	1	0	0	0	0	1	0	0	0	3578	971	34	4	330	4	CLN8	8	1719548	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08		1719548	144644474	38	113815											
HGSNAT	138050	broad.mit.edu	37	chr8	43025814	43025814	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgccctgccgccccgcctCcgcagcgtggacaccttcag	10	20	2	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43025814	T	T	43025814	2	4	123	1	0	0	0	0	0	0	0	1	7155	842	30	4		4	HGSNAT	8	43025814	Silent	SNP	C	TCGA-44-6146-01A-11D-1753-08	41306266	43025814	103338208	39	113816											
CSPP1	79848	broad.mit.edu	37	chr8	68076814	68076814	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcacctatccagtaattttGtagtttgggaacaggactaa	8	7	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68076814	A	A	68076814	1	1	123	0	1	0	0	0	0	0	0	0	3996	1392	48	4		4	CSPP1	8	68076814	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	25051000	68076814	78287208	40	113817											
LRP12	29967	broad.mit.edu	37	chr8	105510147	105510147	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaagcacagggttgaaaAgcagcagcagttggaggatt	14	5	0	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105510147	G	G	105510147	2	3	123	1	0	0	0	0	0	0	0	1	9041	59	3	5		5	LRP12	8	105510147	Silent	SNP	A	TCGA-44-6146-01A-11D-1753-08	37433333	105510147	40853875	41	113818											
SYBU	55638	broad.mit.edu	37	chr8	110588223	110588223	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggccagctgggacttaaGctccacgatttcactttccc	10	14	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110588223	A	A	110588223	3	1	123	1	0	0	0	0	1	0	0	0	15545	971	34	4	1091	4	SYBU	8	110588223	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	5078076	110588223	35775799	42	113819											
FAM75C1	441452	broad.mit.edu	37	chr9	90535185	90535185	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctcctggggccacacctTgaaaaaggtgactttggtca	11	11	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90535185	C	C	90535185	2	2	123	1	0	0	0	0	0	0	0	1	5676	1799	63	5		5	FAM75C1	9	90535185	Silent	SNP	T	TCGA-44-6146-01A-11D-1753-08		90535185	50678246	43	113820											
WDR31	114987	broad.mit.edu	37	chr9	116085062	116085062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgctcctttctgctgcCctgttctgtaccaagtttga	7	14	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116085062	A	A	116085062	1	1	123	0	1	0	0	0	0	0	0	0	17413	638	22	2		2	WDR31	9	116085062	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	25549877	116085062	25128369	44	113821											
SPTAN1	6709	broad.mit.edu	37	chr9	131345051	131345051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgattctttccatctgcagCagtttttccgtgattctgat	7	11	3	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131345051	A	A	131345051	3	1	123	1	0	0	0	0	1	0	0	0	15235	711	25	3	1779	3	SPTAN1	9	131345051	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	15259989	131345051	9868380	45	113822											
PPAPDC3	84814	broad.mit.edu	37	chr9	134183555	134183555	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtcccgcgtgatgatcGgccgccaccacgtcacggac	12	17	1	2	rs148777558		TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134183555	A	A	134183555	3	1	123	1	0	0	0	0	1	0	0	0	12392	1116	39	4	703	4	PPAPDC3	9	134183555	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	2838504	134183555	7029876	46	113823											
USP6NL	9712	broad.mit.edu	37	chr10	11504482	11504482	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggaaagcccgtcccgattCctgtagtggtaggctggagg	15	9	0	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11504482	T	T	11504482	2	4	123	1	0	0	0	0	0	0	0	1	17214	854	30	4		4	USP6NL	10	11504482	Silent	SNP	C	TCGA-44-6146-01A-11D-1753-08		11504482	124030265	47	113824											
WAC	51322	broad.mit.edu	37	chr10	28900789	28900789	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccaagaataagcacacctCaaactaacacagtccctatc	3	15	1	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28900789	T	T	28900789	4	4	123	1	0	0	0	0	0	1	0	0	17374	827	29	4	1413	4	WAC	10	28900789	Nonsense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	17396307	28900789	106633958	48	113825											
UNC5B	219699	broad.mit.edu	37	chr10	73047492	73047492	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcgagggccaggcattcCagaagaccgcctgcaccacc	11	16	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73047492	T	T	73047492	4	4	123	1	0	0	0	0	0	1	0	0	17118	595	21	4	893	4	UNC5B	10	73047492	Nonsense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	44146703	73047492	62487255	49	113826											
SFTPA1	653509	broad.mit.edu	37	chr10	81372315	81372316	+	Intron	DEL	AG	-	-													catttggctcaacctaagtaAgagaggataagcttgaggga							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81372316	-	-	81372315	6	5	123	0	1	1	0	1	0	0	0	0	14302	87	3	0		0	SFTPA1	10	81372315	Intron	DEL	AG	TCGA-44-6146-01A-11D-1753-08	8324823	81372315	54162432	50	113827											
C10orf137	26098	broad.mit.edu	37	chr10	127422791	127422791	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattctctaaaacaatcctaGcattctaataggagattgtt	5	7	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127422791	A	A	127422791	1	1	123	0	1	0	0	0	0	0	0	0	1605	986	34	4		4	C10orf137	10	127422791	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	46050476	127422791	8111956	51	113828											
FADS2	9415	broad.mit.edu	37	chr11	61632616	61632616	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctctgcccaccctacacaCtcctcagcctcttccccacc	3	24	3	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61632616	T	T	61632616	1	4	123	0	1	0	0	0	0	0	0	0	5412	580	20	4		4	FADS2	11	61632616	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08		61632616	73373900	52	113829											
B3GNT1	11041	broad.mit.edu	37	chr11	66114503	66114503	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagggcaaactcccccggctCccgggggtcgggcacggctg	16	16	0	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66114503	T	T	66114503	3	4	123	1	0	0	0	0	1	0	0	0	1261	864	30	4	741	4	B3GNT1	11	66114503	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	4481887	66114503	68892013	53	113830											
FAT3	120114	broad.mit.edu	37	chr11	92616573	92616573	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgagagtgagtaggaagtGgtaatgctcacccctcggtg	14	8	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92616573	A	A	92616573	1	1	123	0	1	0	0	0	0	0	0	0	5748	1363	47	4		4	FAT3	11	92616573	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	26502070	92616573	42389943	54	113831											
NTM	50863	broad.mit.edu	37	chr11	132016192	132016192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtgcactattgacaacCgggtcacccgggtggcctgg	14	12	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132016192	T	T	132016192	3	4	123	1	0	0	0	0	1	0	0	0	10794	643	23	4	276	4	NTM	11	132016192	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	39399619	132016192	2990324	55	113832											
KCNJ8	3764	broad.mit.edu	37	chr12	21926414	21926414	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcacggatgttcttatgcGccaggttgcaggccccgctc	12	14	2	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21926414	A	A	21926414	3	1	123	1	0	0	0	0	1	0	0	0	8126	1087	38	4	1145	4	KCNJ8	12	21926414	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08		21926414	111925481	56	113833											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	123	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	3471870	25398284	108453611	57	113834											
CAPRIN2	65981	broad.mit.edu	37	chr12	30887809	30887809	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacacacacacactctctctc	0	21	2	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30887809	T	T	30887809	1	4	123	0	1	0	0	0	0	0	0	0	2662	493	17	4		4	CAPRIN2	12	30887809	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	5489525	30887809	102964086	58	113835											
MLL2	8085	broad.mit.edu	37	chr12	49418397	49418397	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggattttaggctctgatcggGcacagccagtggggttgatc	15	8	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49418397	A	A	49418397	3	1	123	1	0	0	0	0	1	0	0	0	9714	1203	42	4	617	4	MLL2	12	49418397	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	18530588	49418397	84433498	59	113836											
CSAD	51380	broad.mit.edu	37	chr12	53564229	53564229	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcagccttgaccactcGgacactgtcggtgccaagtc	9	15	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53564229	A	A	53564229	4	1	123	1	0	0	0	0	0	1	0	0	3957	1124	39	4	892	4	CSAD	12	53564229	Nonsense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	4145832	53564229	80287666	60	113837											
MAP3K12	7786	broad.mit.edu	37	chr12	53879112	53879114	+	In_Frame_Del	DEL	CTT	-	-													agttctcaccagatgtcgacCttctcagacacaggttcatt							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53879114	-	-	53879112	7	5	123	1	0	1	0	1	0	0	0	0	9338	680	24	0	1749	0	MAP3K12	12	53879112	In_Frame_Del	DEL	CTT	TCGA-44-6146-01A-11D-1753-08	314883	53879112	79972783	61	113838											
TIMELESS	8914	broad.mit.edu	37	chr12	56822747	56822747	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggttctgctcaatgaagtgGaaggtacggacactgagggt	15	6	2	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56822747	A	A	56822747	2	1	123	1	0	0	0	0	0	0	0	1	16027	1165	41	4		4	TIMELESS	12	56822747	Silent	SNP	G	TCGA-44-6146-01A-11D-1753-08	2943635	56822747	77029148	62	113839											
CORO1C	23603	broad.mit.edu	37	chr12	109052668	109052686	+	Frame_Shift_Del	DEL	TTCCAGATGATAATGGCAT	-	-													gggcttcccctgttcccacaTtccagatgataatggcatta							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109052686	-	-	109052668	7	5	123	1	0	1	0	1	0	0	0	0	3787	1493	52	0	976	0	CORO1C	12	109052668	Frame_Shift_Del	DEL	TTCCAGATGATAATGGCAT	TCGA-44-6146-01A-11D-1753-08	52229921	109052668	24799227	63	113840											
RIMBP2	23504	broad.mit.edu	37	chr12	130912690	130912690	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatggagctactctggggaCggagtgcagggtcccccttc	16	11	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130912690	T	T	130912690	1	4	123	0	1	0	0	0	0	0	0	0	13472	551	19	4		4	RIMBP2	12	130912690	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	21860022	130912690	2939205	64	113841											
POLE	5426	broad.mit.edu	37	chr12	133210611	133210611	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggaacatgcctggagcctgGagaggaggcccctcggctca	15	12	1	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133210611	C	C	133210611	1	2	123	0	1	0	0	0	0	0	0	0	12291	1189	41	4		4	POLE	12	133210611	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	2297921	133210611	641284	65	113842											
SIAH3	283514	broad.mit.edu	37	chr13	46357677	46357677	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactcaagaacagaccggggCgtggcctcccacttgaggcg	13	14	1	3			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46357677	T	T	46357677	2	4	123	1	0	0	0	0	0	0	0	1	14414	755	27	4		4	SIAH3	13	46357677	Silent	SNP	C	TCGA-44-6146-01A-11D-1753-08		46357677	68812201	66	113843											
SETDB2	83852	broad.mit.edu	37	chr13	50026062	50026062	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggtaggttgaagaacacActgttacactttatatctaa	7	6	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50026062	G	G	50026062	1	3	123	0	1	0	0	0	0	0	0	0	14252	174	6	5		5	SETDB2	13	50026062	Intron	SNP	A	TCGA-44-6146-01A-11D-1753-08	3668385	50026062	65143816	67	113844											
DCT	1638	broad.mit.edu	37	chr13	95131260	95131260	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaattttcttggccacagctCacggtcatcctggtttcgta	9	11	3	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95131260	A	A	95131260	4	1	123	1	0	0	0	0	0	1	0	0	4337	835	29	3	1448	3	DCT	13	95131260	Nonsense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	45105198	95131260	20038618	68	113845											
NALCN	259232	broad.mit.edu	37	chr13	101756573	101756573	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaactcatacctcttgcGcttataccaagaaatgcagg	7	11	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101756573	C	C	101756573	1	2	123	0	1	0	0	0	0	0	0	0	10242	1102	38	4		4	NALCN	13	101756573	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	6625313	101756573	13413305	69	113846											
C13orf28	122258	broad.mit.edu	37	chr13	113052528	113052528	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtctgtggtatggaataCgtgaccctataatttgagca	12	6	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113052528	T	T	113052528	1	4	123	0	1	0	0	0	0	0	0	0	1737	551	19	4		4	C13orf28	13	113052528	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	11295955	113052528	2117350	70	113847											
POTEG	404785	broad.mit.edu	37	chr14	19566142	19566142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaacctttttggcaccagGgaccggttttgtggaagaca	11	11	0	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19566142	T	T	19566142	1	4	123	0	1	0	0	0	0	0	0	0	12362	1247	43	2		2	POTEG	14	19566142	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08		19566142	87783398	71	113848											
GABRG3	2567	broad.mit.edu	37	chr15	27772631	27772631	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaccatcgccaggaagtcCttgccacgcgtgtcctacgt	10	15	0	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27772631	T	T	27772631	2	4	123	1	0	0	0	0	0	0	0	1	6233	668	24	4		4	GABRG3	15	27772631	Silent	SNP	C	TCGA-44-6146-01A-11D-1753-08		27772631	74758761	72	113849											
GABRG3	2567	broad.mit.edu	37	chr15	27772798	27772798	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagctgcagtagcaaaggttCtccgggaggtaatgggggcg	18	7	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27772798	A	A	27772798	1	1	123	0	1	0	0	0	0	0	0	0	6233	928	32	3		3	GABRG3	15	27772798	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	167	27772798	74758594	73	113850											
BUB1B	701	broad.mit.edu	37	chr15	40505767	40505767	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttttttgaggcgagggtctCactctgtcacctaggttgga	12	9	3	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40505767	A	A	40505767	1	1	123	0	1	0	0	0	0	0	0	0	1581	841	29	3		3	BUB1B	15	40505767	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	12732969	40505767	62025625	74	113851											
ADAM10	102	broad.mit.edu	37	chr15	58957284	58957285	+	Intron	INS	-	A	A													cctaaatgcaagctagtgttINSaaaatccttacctgtgttac							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58957285	A	A	58957284	6	5	123	0	1	1	1	0	0	0	0	0	234	1769	61	0		0	ADAM10	15	58957284	Intron	INS	-	TCGA-44-6146-01A-11D-1753-08	18451517	58957284	43574108	75	113852											
VPS33B	26276	broad.mit.edu	37	chr15	91560282	91560282	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagaatccaataagacaatgGacataagagtgcctgaaaag	10	6	0	4			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91560282	A	A	91560282	1	1	123	0	1	0	0	0	0	0	0	0	17329	1189	41	4		4	VPS33B	15	91560282	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	32602998	91560282	10971110	76	113853											
SRL	6345	broad.mit.edu	37	chr16	4245571	4245571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctctttcttgctgcttgCggttctcgatgatgcctggt	10	11	3	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4245571	A	A	4245571	3	1	123	1	0	0	0	0	1	0	0	0	15268	768	27	3	836	3	SRL	16	4245571	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08		4245571	86109182	77	113854											
SNTB2	6645	broad.mit.edu	37	chr16	69293882	69293882	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaatagatttgcagttaTgtattttaaacctggcaggt	8	4	0	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69293882	A	A	69293882	1	1	123	0	1	0	0	0	0	0	0	0	14987	1479	51	5		5	SNTB2	16	69293882	Intron	SNP	T	TCGA-44-6146-01A-11D-1753-08	65048311	69293882	21060871	78	113855											
FUK	197258	broad.mit.edu	37	chr16	70504952	70504952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagctgggtcctgggagcGtcctgcagcactgccacctg	13	15	0	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70504952	A	A	70504952	3	1	123	1	0	0	0	0	1	0	0	0	6156	1145	40	4	1189	4	FUK	16	70504952	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	1211070	70504952	19849801	79	113856											
CCDC144NL	339184	broad.mit.edu	37	chr17	20796646	20796646	+	Intron	DEL	T	-	-													tgatcaaaacttccttactcTtacttcttttttacccatgg							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20796646	-	-	20796646	6	5	123	0	1	1	0	1	0	0	0	0	2805	1624	56	0		0	CCDC144NL	17	20796646	Intron	DEL	T	TCGA-44-6146-01A-11D-1753-08		20796646	60398564	80	113857											
KCNJ12	3768	broad.mit.edu	37	chr17	21318889	21318889	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacctgtgtggacatcCgctggcggtacatgctgctc	11	14	1	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21318889	T	T	21318889	3	4	123	1	0	0	0	0	1	0	0	0	8116	652	23	4	237	4	KCNJ12	17	21318889	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	522243	21318889	59876321	81	113858											
CCL15	6359	broad.mit.edu	37	chr17	34325389	34325389	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacacgggatgctttgtgAgatgtaggaggtgcagcagt	16	5	0	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34325389	G	G	34325389	3	3	123	1	0	0	0	0	1	0	0	0	2914	304	11	5	174	5	CCL15	17	34325389	Missense_Mutation	SNP	A	TCGA-44-6146-01A-11D-1753-08	13006500	34325389	46869821	82	113859											
KRT12	3859	broad.mit.edu	37	chr17	39022832	39022832	+	Intron	DEL	A	-	-													acattgtaatggtaaaaaggAaaaaaaaaattcccaaagcg							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39022832	-	-	39022832	6	5	123	0	1	1	0	1	0	0	0	0	8520	261	9	0		0	KRT12	17	39022832	Intron	DEL	A	TCGA-44-6146-01A-11D-1753-08	4697443	39022832	42172378	83	113860											
COL1A1	1277	broad.mit.edu	37	chr17	48272904	48272904	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggttagaaagtggcaaaggGgacactgagtcggggacact	16	6	0	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48272904	A	A	48272904	1	1	123	0	1	0	0	0	0	0	0	0	3709	1247	43	4		4	COL1A1	17	48272904	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	9250072	48272904	32922306	84	113861											
GRIN2C	2905	broad.mit.edu	37	chr17	72846417	72846417	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcaccaggtacaggtcGtaggagaatttgaccactct	11	9	2	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72846417	A	A	72846417	2	1	123	1	0	0	0	0	0	0	0	1	6847	1140	40	4		4	GRIN2C	17	72846417	Silent	SNP	G	TCGA-44-6146-01A-11D-1753-08	24573513	72846417	8348793	85	113862											
LAMA1	284217	broad.mit.edu	37	chr18	6958505	6958505	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatcaggtttttgatacaGccatggaacgatcttctcat	8	8	3	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6958505	A	A	6958505	2	1	123	1	0	0	0	0	0	0	0	1	8677	958	34	4		4	LAMA1	18	6958505	Silent	SNP	G	TCGA-44-6146-01A-11D-1753-08		6958505	71118743	86	113863											
AFG3L2	10939	broad.mit.edu	37	chr18	12351268	12351268	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacagtcacacctacactcAtgagcactggacctgcccca	6	16	2	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12351268	T	T	12351268	1	4	123	0	1	0	0	0	0	0	0	0	360	232	8	5		5	AFG3L2	18	12351268	Intron	SNP	A	TCGA-44-6146-01A-11D-1753-08	5392763	12351268	65725980	87	113864											
MEX3C	51320	broad.mit.edu	37	chr18	48702929	48702929	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctagaggtggaaccaccaTtggaagaggagtaactattg	13	6	0	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48702929	C	C	48702929	3	2	123	1	0	0	0	0	1	0	0	0	9604	1493	52	5	211	5	MEX3C	18	48702929	Missense_Mutation	SNP	T	TCGA-44-6146-01A-11D-1753-08	36351661	48702929	29374319	88	113865											
SAFB	6294	broad.mit.edu	37	chr19	5661591	5661591	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgggagcgcgaggagcGtgagcggctggagattgccc	20	9	0	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5661591	A	A	5661591	3	1	123	1	0	0	0	0	1	0	0	0	13917	1145	40	4	1983	4	SAFB	19	5661591	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08		5661591	53467392	89	113866											
CASP14	23581	broad.mit.edu	37	chr19	15166841	15166841	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctggttcaagaaggaaaaGcaaggaaaacgaaccctgaa	11	7	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15166841	C	C	15166841	3	2	123	1	0	0	0	0	1	0	0	0	2696	971	34	4	692	4	CASP14	19	15166841	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	9505250	15166841	43962142	90	113867											
CEACAM20	125931	broad.mit.edu	37	chr19	45017031	45017031	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctgaaaccccaaagccctCattattctgtgcctctagtc	6	15	3	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45017031	A	A	45017031	1	1	123	0	1	0	0	0	0	0	0	0	3221	841	29	3		3	CEACAM20	19	45017031	Intron	SNP	C	TCGA-44-6146-01A-11D-1753-08	29850190	45017031	14111952	91	113868											
ZNF671	79891	broad.mit.edu	37	chr19	58234548	58234548	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcccaccataggaagaacaGagtggtaaaggcagaaaagc	11	8	0	3			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58234548	C	C	58234548	1	2	123	0	1	0	0	0	0	0	0	0	18205	957	33	4		4	ZNF671	19	58234548	Intron	SNP	G	TCGA-44-6146-01A-11D-1753-08	13217517	58234548	894435	92	113869											
C20orf194	25943	broad.mit.edu	37	chr20	3278717	3278717	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcttcgatttggggaaaaGggcaatcatcagaaaattgc	10	6	3	1			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3278717	C	C	3278717	3	2	123	1	0	0	0	0	1	0	0	0	2121	1000	35	4	1709	4	C20orf194	20	3278717	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08		3278717	59746803	93	113870											
XKR7	343702	broad.mit.edu	37	chr20	30584388	30584388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgcgggactcgcgggacGacaagcggccgctgtcctac	15	14	0	0			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30584388	A	A	30584388	3	1	123	1	0	0	0	0	1	0	0	0	17563	1058	37	4	878	4	XKR7	20	30584388	Missense_Mutation	SNP	G	TCGA-44-6146-01A-11D-1753-08	27305671	30584388	32441132	94	113871											
COL4A5	1287	broad.mit.edu	37	chrX	107829820	107829821	+	Intron	INS	-	T	T													ttcttctttgcatttctttaINSttttttttttctttggtaat							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107829821	T	T	107829820	6	5	123	0	1	1	1	0	0	0	0	0	3726	464	16	0		0	COL4A5	23	107829820	Intron	INS	-	TCGA-44-6146-01A-11D-1753-08		107829820	47440740	95	113872											
ODZ1	10178	broad.mit.edu	37	chrX	123780627	123780627	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagagatacactctccatttCcattgcaattggttgaacag	7	10	1	2			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123780627	T	T	123780627	3	4	123	1	0	0	0	0	1	0	0	0	10929	855	30	4	6681	4	ODZ1	23	123780627	Missense_Mutation	SNP	C	TCGA-44-6146-01A-11D-1753-08	15950807	123780627	31489933	96	113873											
IGSF1	3547	broad.mit.edu	37	chrX	130416522	130416522	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtatcactgtaggttacaTtgttgaggaagaatgatgtg	12	4	1	3			TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130416522	A	A	130416522	3	1	123	1	0	0	0	0	1	0	0	0	7666	1493	52	5	2939	5	IGSF1	23	130416522	Missense_Mutation	SNP	T	TCGA-44-6146-01A-11D-1753-08	6635895	130416522	24854038	97	113874											
AFF2	2334	broad.mit.edu	37	chrX	148048222	148048223	+	Intron	DEL	TG	-	-													tctttcttttttttttttttTgccttctttcgtaacgtgct							TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	148048223	-	-	148048222	6	5	123	0	1	1	0	1	0	0	0	0	357	1827	63	0		0	AFF2	23	148048222	Intron	DEL	TG	TCGA-44-6146-01A-11D-1753-08	17631700	148048222	7222338	98	113875											
MMEL1	79258	broad.mit.edu	37	chr1	2537763	2537763	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacgcgcctgttgaactgtGagttcatcagcgccagctgc	13	12	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2537763	C	C	2537763	4	2	124	1	0	0	0	0	0	1	0	0	9739	1294	45	4	1733	4	MMEL1	1	2537763	Nonsense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08		2537763	246712858	1	113876											
KCNAB2	8514	broad.mit.edu	37	chr1	6150539	6150539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaccccgatggaaggtaGgtggtctgcggcggcgccac	15	13	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6150539	T	T	6150539	1	4	124	0	1	0	0	0	0	0	0	0	8080	1015	35	2		2	KCNAB2	1	6150539	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	3612776	6150539	243100082	2	113877											
H6PD	9563	broad.mit.edu	37	chr1	9323676	9323676	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctcggatcttgttcaagaAccaggcctgctgtgtgcaga	12	11	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9323676	T	T	9323676	3	4	124	1	0	0	0	0	1	0	0	0	7002	43	2	5	1138	5	H6PD	1	9323676	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	3173137	9323676	239926945	3	113878											
CASZ1	54897	broad.mit.edu	37	chr1	10703261	10703261	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcttccccagcatcctccGcatgtgcttccgcgcgtggg	11	16	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10703261	A	A	10703261	3	1	124	1	0	0	0	0	1	0	0	0	2711	1086	38	4	1315	4	CASZ1	1	10703261	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	1379585	10703261	238547360	4	113879											
PRAMEF1	65121	broad.mit.edu	37	chr1	12854181	12854181	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgagtaagaggcagacagcAgaggactgtccaaggatggg	16	7	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12854181	G	G	12854181	2	3	124	1	0	0	0	0	0	0	0	1	12526	175	7	5		5	PRAMEF1	1	12854181	Silent	SNP	A	TCGA-44-6147-01A-11D-1753-08	2150920	12854181	236396440	5	113880											
LOC440563	440563	broad.mit.edu	37	chr1	13183250	13183250	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctacctcttgtttgctcTgttccttttcaattttttcc	3	13	4	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13183250	C	C	13183250	3	2	124	1	0	0	0	0	1	0	0	0	8962	1580	55	5	262	5	LOC440563	1	13183250	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	329069	13183250	236067371	6	113881											
HTR1D	3352	broad.mit.edu	37	chr1	23520467	23520467	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaaaccaagaggtcggtGgtggccagggagccaatcag	16	8	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23520467	T	T	23520467	2	4	124	1	0	0	0	0	0	0	0	1	7508	1335	47	2		2	HTR1D	1	23520467	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	10337217	23520467	225730154	7	113882											
IL28RA	163702	broad.mit.edu	37	chr1	24484070	24484070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcttgggaccagaggagcCctgggcctccctgagtccac	13	15	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24484070	A	A	24484070	3	1	124	1	0	0	0	0	1	0	0	0	7754	622	22	2	453	2	IL28RA	1	24484070	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	963603	24484070	224766551	8	113883											
ARID1A	8289	broad.mit.edu	37	chr1	27105723	27105723	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactagaagaggaagaagaAgaggaagtagttgaaaatga	13	1	0	7			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27105723	G	G	27105723	2	3	124	1	0	0	0	0	0	0	0	1	915	69	3	5		5	ARID1A	1	27105723	Silent	SNP	A	TCGA-44-6147-01A-11D-1753-08	2621653	27105723	222144898	9	113884			1	91		3	3	773	N	G_A	5.727727e-05
ARID1A	8289	broad.mit.edu	37	chr1	27106483	27106483	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaggcaccactaacttatGaaaaggaggaggaacaggac	12	8	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27106483	A	A	27106483	3	1	124	1	0	0	0	0	1	0	0	0	915	1291	45	4	6172	4	ARID1A	1	27106483	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	760	27106483	222144138	10	113885			1	91		3	3	773	N	G_A	5.727727e-05
ARID1A	8289	broad.mit.edu	37	chr1	27106495	27106495	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taacttatgaaaaggaggagGaacaggaccaaggggtgagc	15	5	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27106495	T	T	27106495	4	4	124	1	0	0	0	0	0	1	0	0	915	1175	41	3	6184	3	ARID1A	1	27106495	Nonsense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	12	27106495	222144126	11	113886			1	91		3	3	773	N	G_A	5.727727e-05
PTPRU	10076	broad.mit.edu	37	chr1	29637339	29637339	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccatgtgcctcccagCgtgctggaatgccctcagct	9	17	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29637339	T	T	29637339	1	4	124	0	1	0	0	0	0	0	0	0	12921	783	27	4		4	PTPRU	1	29637339	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	2530844	29637339	219613282	12	113887											
COL16A1	1307	broad.mit.edu	37	chr1	32145269	32145269	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggggcctggtggtccGggaatacctggtggaccctg	18	11	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32145269	T	T	32145269	2	4	124	1	0	0	0	0	0	0	0	1	3705	1103	39	1		1	COL16A1	1	32145269	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	2507930	32145269	217105352	13	113888											
CSMD2	114784	broad.mit.edu	37	chr1	34209109	34209109	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggctctcaggcctggccaGgatgagccagacacagtgga	15	12	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34209109	A	A	34209109	2	1	124	1	0	0	0	0	0	0	0	1	3979	991	35	4		4	CSMD2	1	34209109	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	2063840	34209109	215041512	14	113889											
AGBL4	84871	broad.mit.edu	37	chr1	50311960	50311960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcagagcacccacctcaCacagcactggaggatccaca	9	15	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50311960	A	A	50311960	1	1	124	0	1	0	0	0	0	0	0	0	377	493	17	3		3	AGBL4	1	50311960	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	16102851	50311960	198938661	15	113890											
ZFYVE9	9372	broad.mit.edu	37	chr1	52627915	52627915	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtatcgactataataagGagaaggtgatcatcttctgt	9	6	4	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52627915	A	A	52627915	1	1	124	0	1	0	0	0	0	0	0	0	17797	1189	41	4		4	ZFYVE9	1	52627915	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	2315955	52627915	196622706	16	113891											
CC2D1B	200014	broad.mit.edu	37	chr1	52827128	52827128	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctcctctccactgccctctCctccaccaggcccaagcttg	5	22	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52827128	A	A	52827128	1	1	124	0	1	0	0	0	0	0	0	0	2753	870	30	3		3	CC2D1B	1	52827128	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	199213	52827128	196423493	17	113892											
GADD45A	1647	broad.mit.edu	37	chr1	68153432	68153432	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacatggatcaatgggttcCagtgattaatctccctgaac	8	10	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68153432	T	T	68153432	3	4	124	1	0	0	0	0	1	0	0	0	6241	594	21	4	487	4	GADD45A	1	68153432	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	15326304	68153432	181097189	18	113893											
TNNI3K	51086	broad.mit.edu	37	chr1	74958006	74958006	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatttcagaatcttatcaAgacagtcaactgatttgatt	5	7	4	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74958006	T	T	74958006	1	4	124	0	1	0	0	0	0	0	0	0	16452	87	3	5		5	TNNI3K	1	74958006	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	6804574	74958006	174292615	19	113894											
MSH4	4438	broad.mit.edu	37	chr1	76345780	76345780	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttacatcagcagatttaAttaaaatgaatgaaagatgc	7	5	1	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76345780	G	G	76345780	3	3	124	1	0	0	0	0	1	0	0	0	9966	101	4	5	1773	5	MSH4	1	76345780	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	1387774	76345780	172904841	20	113895											
COL24A1	255631	broad.mit.edu	37	chr1	86581035	86581035	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctcttccctgacggaccTgggatacctgctggaccagg	11	15	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86581035	C	C	86581035	2	2	124	1	0	0	0	0	0	0	0	1	3715	1567	55	5		5	COL24A1	1	86581035	Silent	SNP	T	TCGA-44-6147-01A-11D-1753-08	10235255	86581035	162669586	21	113896											
GBP5	115362	broad.mit.edu	37	chr1	89735197	89735197	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctgctcattaaagttctcGatgaggcacatggggtctga	12	8	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89735197	A	A	89735197	2	1	124	1	0	0	0	0	0	0	0	1	6339	1048	37	4		4	GBP5	1	89735197	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	3154162	89735197	159515424	22	113897											
LPPR4	9890	broad.mit.edu	37	chr1	99771298	99771298	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagtatgtttcagcacagaGacgccctcaggtctctgaca	10	11	3	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771298	T	T	99771298	3	4	124	1	0	0	0	0	1	0	0	0	9014	942	33	3	1050	3	LPPR4	1	99771298	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	10036101	99771298	149479323	23	113898											
DBT	1629	broad.mit.edu	37	chr1	100679043	100679043	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccacagctggaccgtcatCcgctatcctaccaactctat	5	16	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100679043	T	T	100679043	1	4	124	0	1	0	0	0	0	0	0	0	4291	870	30	4		4	DBT	1	100679043	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	907745	100679043	148571578	24	113899											
AMPD1	270	broad.mit.edu	37	chr1	115231166	115231166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaatatactaagcactcCccttacaccacttacctcct	2	17	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115231166	A	A	115231166	1	1	124	0	1	0	0	0	0	0	0	0	585	638	22	2		2	AMPD1	1	115231166	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	14552123	115231166	134019455	25	113900											
CD101	9398	broad.mit.edu	37	chr1	117559956	117559957	+	Missense_Mutation	DNP	GG	TT	TT													aggctggagaaaatggactgGgccaccttccagctggagat							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	117559957	TT	TT	117559956	3	4	124	1	0	0	0	0	1	0	0	0	2992	1241	43	2	1491	2	CD101	1	117559956	Missense_Mutation	DNP	GG	TCGA-44-6147-01A-11D-1753-08	2328790	117559956	131690665	26	113901											
WDR3	10885	broad.mit.edu	37	chr1	118494942	118494942	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtacctacagtttgtaCccaagtctcacctcttcttc	5	13	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118494942	T	T	118494942	3	4	124	1	0	0	0	0	1	0	0	0	17412	507	18	4	1993	4	WDR3	1	118494942	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	934986	118494942	130755679	27	113902											
SPAG17	200162	broad.mit.edu	37	chr1	118596736	118596736	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctataatcagataaaattaAacttcttagtaactcttaaa	2	7	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118596736	T	T	118596736	1	4	124	0	1	0	0	0	0	0	0	0	15095	29	1	5		5	SPAG17	1	118596736	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	101794	118596736	130653885	28	113903											
PDE4DIP	9659	broad.mit.edu	37	chr1	145074916	145074916	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttctcccaaaaatcgtaTgtatgacagatttttatgtt	5	8	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145074916	A	A	145074916	1	1	124	0	1	0	0	0	0	0	0	0	11737	1479	51	5		5	PDE4DIP	1	145074916	3'UTR	SNP	T	TCGA-44-6147-01A-11D-1753-08	26478180	145074916	104175705	29	113904											
GABPB2	126626	broad.mit.edu	37	chr1	151070267	151070267	+	Intron	DEL	G	-	-													tgtctcaaaaaaaaaaaaaaGaaagacagaaaagaaaagct							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151070267	-	-	151070267	6	5	124	0	1	1	0	1	0	0	0	0	6219	957	33	0		0	GABPB2	1	151070267	Intron	DEL	G	TCGA-44-6147-01A-11D-1753-08	5995351	151070267	98180354	30	113905											
FLG	2312	broad.mit.edu	37	chr1	152279939	152279939	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattgctcgtagtgggatcCctgccttcctccactgcttg	9	14	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152279939	A	A	152279939	4	1	124	1	0	0	0	0	0	1	0	0	5979	632	22	2	4766	2	FLG	1	152279939	Nonsense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1209672	152279939	96970682	31	113906											
LCE2C	353140	broad.mit.edu	37	chr1	152648491	152648491	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgactaaactcctgccagCatgtcttgccagcaaaacca	7	13	1	1	rs12073860	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152648491	A	A	152648491	1	1	124	0	1	0	0	0	0	0	0	0	8739	725	25	3		3	LCE2C	1	152648491	5'UTR	SNP	C	TCGA-44-6147-01A-11D-1753-08	368552	152648491	96602130	32	113907											
KPRP	448834	broad.mit.edu	37	chr1	152732100	152732100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatccagtgccgcctgccGctccaacagtgctgcgtcaa	10	16	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152732100	T	T	152732100	2	4	124	1	0	0	0	0	0	0	0	1	8507	1074	38	3		3	KPRP	1	152732100	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	83609	152732100	96518521	33	113908											
RAB13	5872	broad.mit.edu	37	chr1	153957266	153957266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatcaattcctaggggtGgaaggtatgcactgaagttg	13	5	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153957266	A	A	153957266	1	1	124	0	1	0	0	0	0	0	0	0	13007	1363	47	4		4	RAB13	1	153957266	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	1225166	153957266	95293355	34	113909											
THBS3	7059	broad.mit.edu	37	chr1	155170407	155170407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccggcagttgtcctgggCagaggggtgggaggggaagg	22	7	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155170407	A	A	155170407	1	1	124	0	1	0	0	0	0	0	0	0	15978	725	25	3		3	THBS3	1	155170407	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1213141	155170407	94080214	35	113910											
KIAA0907	22889	broad.mit.edu	37	chr1	155895471	155895471	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctcggccagatgctggcTcaatgcagcctgaacctttg	10	13	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155895471	G	G	155895471	3	3	124	1	0	0	0	0	1	0	0	0	8269	1551	54	5	1031	5	KIAA0907	1	155895471	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	725064	155895471	93355150	36	113911											
SH2D2A	9047	broad.mit.edu	37	chr1	156784941	156784941	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgcaggaacaggcttcCttctccaggcacctcctctg	10	16	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156784941	A	A	156784941	4	1	124	1	0	0	0	0	0	1	0	0	14345	690	24	2	1027	2	SH2D2A	1	156784941	Nonsense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	889470	156784941	92465680	37	113912											
ARHGEF11	9826	broad.mit.edu	37	chr1	156906916	156906916	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagggtggctgggcgggctGggggaagatccctgggccag	21	8	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156906916	A	A	156906916	1	1	124	0	1	0	0	0	0	0	0	0	898	1363	47	4		4	ARHGEF11	1	156906916	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	121975	156906916	92343705	38	113913											
CD5L	922	broad.mit.edu	37	chr1	157801571	157801571	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacagctcacatctacagGcagcaatgggggctgcttgt	11	11	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157801571	T	T	157801571	1	4	124	0	1	0	0	0	0	0	0	0	3057	1218	42	3		3	CD5L	1	157801571	3'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08	894655	157801571	91449050	39	113914											
NOS1AP	9722	broad.mit.edu	37	chr1	162326617	162326617	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctctactcccatttccattGaagatatagtgctgtcagct	6	12	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162326617	T	T	162326617	1	4	124	0	1	0	0	0	0	0	0	0	10637	1305	45	3		3	NOS1AP	1	162326617	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	4525046	162326617	86924004	40	113915											
UHMK1	127933	broad.mit.edu	37	chr1	162482391	162482391	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgtattcttttattttTttcttggtcatttgacagtc	7	5	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162482391	G	G	162482391	1	3	124	0	1	0	0	0	0	0	0	0	17092	1856	64	5		5	UHMK1	1	162482391	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	155774	162482391	86768230	41	113916											
DUSP27	92235	broad.mit.edu	37	chr1	167082806	167082806	+	Intron	DEL	C	-	-													agtgttctgtattcttgggtCcttaaacttaggaaggcttt							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	167082806	-	-	167082806	6	5	124	0	1	1	0	1	0	0	0	0	4864	870	30	0		0	DUSP27	1	167082806	Intron	DEL	C	TCGA-44-6147-01A-11D-1753-08	4600415	167082806	82167815	42	113917											
ADCY10	55811	broad.mit.edu	37	chr1	167787447	167787447	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catggttcttcttggcaaaaGatttttagctctattggaaa	8	6	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167787447	C	C	167787447	3	2	124	1	0	0	0	0	1	0	0	0	293	942	33	4	499	4	ADCY10	1	167787447	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	704641	167787447	81463174	43	113918											
BAT2L2	23215	broad.mit.edu	37	chr1	171511222	171511222	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttctacctccaaagagggaAattgcaaagagaagtttttc	9	7	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171511222	T	T	171511222	3	4	124	1	0	0	0	0	1	0	0	0	1326	11	1	5	4669	5	BAT2L2	1	171511222	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	3723775	171511222	77739399	44	113919											
TNR	7143	broad.mit.edu	37	chr1	175362997	175362997	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccacggtggtctctgtgatCgtcttaaattgtagcccttg	10	10	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175362997	T	T	175362997	2	4	124	1	0	0	0	0	0	0	0	1	16461	871	31	4		4	TNR	1	175362997	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	3851775	175362997	73887624	45	113920											
PAPPA2	60676	broad.mit.edu	37	chr1	176671714	176671714	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcctcactttgtggctgtAgtggtcacaaaccctttggt	10	10	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176671714	G	G	176671714	1	3	124	0	1	0	0	0	0	0	0	0	11527	435	15	5		5	PAPPA2	1	176671714	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	1308717	176671714	72578907	46	113921											
FAM5B	57795	broad.mit.edu	37	chr1	177199216	177199216	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggccccttccaccgcgcTcaggagtatgctgacttcat	11	15	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177199216	C	C	177199216	2	2	124	1	0	0	0	0	0	0	0	1	5644	1538	54	5		5	FAM5B	1	177199216	Silent	SNP	T	TCGA-44-6147-01A-11D-1753-08	527502	177199216	72051405	47	113922											
CACNA1E	777	broad.mit.edu	37	chr1	181753820	181753820	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcagacaggcagcagctaGactcagagctacaaaaggag	13	9	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181753820	T	T	181753820	3	4	124	1	0	0	0	0	1	0	0	0	2568	942	33	3	5656	3	CACNA1E	1	181753820	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	4554604	181753820	67496801	48	113923											
HMCN1	83872	broad.mit.edu	37	chr1	186056670	186056670	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagtgtgagtcgaacgctGtgccacctccagtcatcact	11	12	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186056670	A	A	186056670	3	1	124	1	0	0	0	0	1	0	0	0	7287	1377	48	4	9494	4	HMCN1	1	186056670	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	4302850	186056670	63193951	49	113924											
HMCN1	83872	broad.mit.edu	37	chr1	186106738	186106739	+	Frame_Shift_Ins	INS	-	T	T													cagccccttccagccaatggINStgggaagccctgccaaggtt							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186106739	T	T	186106738	7	5	124	1	0	1	1	0	0	0	0	0	7287	1261	44	0	14041	0	HMCN1	1	186106738	Frame_Shift_Ins	INS	-	TCGA-44-6147-01A-11D-1753-08	50068	186106738	63143883	50	113925											
RGS21	431704	broad.mit.edu	37	chr1	192312052	192312052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgccaatttgtaacccaGgggataggtattcgcatact	10	8	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192312052	T	T	192312052	1	4	124	0	1	0	0	0	0	0	0	0	13413	1015	35	2		2	RGS21	1	192312052	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	6205314	192312052	56938569	51	113926											
CACNA1S	779	broad.mit.edu	37	chr1	201044651	201044651	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacgaaaaggatgatgaaGtaaatgcacacaagcatgcc	10	8	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201044651	A	A	201044651	2	1	124	1	0	0	0	0	0	0	0	1	2573	1024	36	4		4	CACNA1S	1	201044651	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	8732599	201044651	48205970	52	113927											
ATP2B4	493	broad.mit.edu	37	chr1	203652429	203652429	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaatggaactgaggaagctCatggagctgcgttcaaggga	15	6	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203652429	A	A	203652429	2	1	124	1	0	0	0	0	0	0	0	1	1146	813	29	3		3	ATP2B4	1	203652429	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	2607778	203652429	45598192	53	113928											
ATP2B4	493	broad.mit.edu	37	chr1	203683462	203683462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctccatcaggaagccaGgtccggcttctggttgcctg	11	14	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203683462	T	T	203683462	1	4	124	0	1	0	0	0	0	0	0	0	1146	1015	35	2		2	ATP2B4	1	203683462	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	31033	203683462	45567159	54	113929											
ZC3H11A	9877	broad.mit.edu	37	chr1	203816897	203816897	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggatcttcctaggagttGtttgacaacctttctttact	9	8	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203816897	A	A	203816897	1	1	124	0	1	0	0	0	0	0	0	0	17686	1392	48	4		4	ZC3H11A	1	203816897	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	133435	203816897	45433724	55	113930											
NFASC	23114	broad.mit.edu	37	chr1	204955154	204955154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcccgcctcttcccctaCagtaactacaagctggagat	8	14	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204955154	T	T	204955154	1	4	124	0	1	0	0	0	0	0	0	0	10454	489	17	4		4	NFASC	1	204955154	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1138257	204955154	44295467	56	113931											
PLXNA2	5362	broad.mit.edu	37	chr1	208206914	208206914	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccagccttgcttgtagaaTccttccagaatccctgcccg	7	16	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	208206914	G	G	208206914	1	3	124	0	1	0	0	0	0	0	0	0	12215	1450	50	5		5	PLXNA2	1	208206914	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	3251760	208206914	41043707	57	113932											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209936616	209936616	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaaagcagaagaggtttGctctacacaagccagcccag	10	12	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209936616	T	T	209936616	1	4	124	0	1	0	0	0	0	0	0	0	16566	1334	46	3		3	TRAF3IP3	1	209936616	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	1729702	209936616	39314005	58	113933											
ZNF678	339500	broad.mit.edu	37	chr1	227843217	227843217	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctctcacctaactagCcataagagaattcatactgg	7	11	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227843217	T	T	227843217	2	4	124	1	0	0	0	0	0	0	0	1	18212	738	26	4		4	ZNF678	1	227843217	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	17906601	227843217	21407404	59	113934											
KIAA1383	54627	broad.mit.edu	37	chr1	232941882	232941882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagccaagcccaaaagaGgctgataagccgctggggga	13	11	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232941882	T	T	232941882	3	4	124	1	0	0	0	0	1	0	0	0	8298	991	35	2	1115	2	KIAA1383	1	232941882	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	5098665	232941882	16308739	60	113935											
RYR2	6262	broad.mit.edu	37	chr1	237664020	237664020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccccaataggttgtattgCtcgtactgtaagctcaccaa	7	13	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237664020	A	A	237664020	3	1	124	1	0	0	0	0	1	0	0	0	13880	797	28	3	2295	3	RYR2	1	237664020	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	4722138	237664020	11586601	61	113936											
FMN2	56776	broad.mit.edu	37	chr1	240370635	240370635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgagtttcaaaccagccaCgaacactctgtttcctctgc	6	15	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240370635	A	A	240370635	3	1	124	1	0	0	0	0	1	0	0	0	6008	535	19	3	2541	3	FMN2	1	240370635	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	2706615	240370635	8879986	62	113937											
KMO	8564	broad.mit.edu	37	chr1	241714081	241714081	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaacaaactaaaagcttCaggatcaccattttcattga	4	8	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241714081	T	T	241714081	1	4	124	0	1	0	0	0	0	0	0	0	8495	841	29	4		4	KMO	1	241714081	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1343446	241714081	7536540	63	113938											
OR2L13	284521	broad.mit.edu	37	chr1	248138758	248138758	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgtagcacccacctcacTgtagtaattttctactatgc	5	13	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248138758	A	A	248138758	1	1	124	0	1	0	0	0	0	0	0	0	11100	1595	55	5		5	OR2L13	1	248138758	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	6424677	248138758	1111863	64	113939											
OR2L13	284521	broad.mit.edu	37	chr1	248166365	248166365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcagggattgaaattctgCggataaggatgaatttctgt	11	4	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248166365	A	A	248166365	1	1	124	0	1	0	0	0	0	0	0	0	11100	783	27	3		3	OR2L13	1	248166365	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	27607	248166365	1084256	65	113940											
OR2M3	127062	broad.mit.edu	37	chr1	248366864	248366864	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgttgtagcaacattttcCttctcctactgtgggtctcg	9	10	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366864	T	T	248366864	2	4	124	1	0	0	0	0	0	0	0	1	11105	668	24	4		4	OR2M3	1	248366864	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	200499	248366864	883757	66	113941											
OR2M4	26245	broad.mit.edu	37	chr1	248402835	248402835	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagactacttgtcatttGttgtgtggtaatgctaatct	9	5	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248402835	A	A	248402835	3	1	124	1	0	0	0	0	1	0	0	0	11106	1377	48	4	607	4	OR2M4	1	248402835	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	35971	248402835	847786	67	113942											
ADCY3	109	broad.mit.edu	37	chr2	25062621	25062621	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacaggaggaatgctgttcCggggttgtagggaggccttc	17	7	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25062621	T	T	25062621	1	4	124	0	1	0	0	0	0	0	0	0	295	667	23	4		4	ADCY3	2	25062621	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08		25062621	218136752	68	113943											
ALK	238	broad.mit.edu	37	chr2	29445295	29445295	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggcagagaaggggagggTggggaggaggaggaggctgt	25	3	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29445295	G	G	29445295	1	3	124	0	1	0	0	0	0	0	0	0	525	1711	59	5		5	ALK	2	29445295	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	4382674	29445295	213754078	69	113944											
EIF2AK2	5610	broad.mit.edu	37	chr2	37376053	37376053	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatcacggaagtgtggatgTtgattctgaagaccgccaga	12	7	2	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37376053	A	A	37376053	1	1	124	0	1	0	0	0	0	0	0	0	5037	1740	60	5		5	EIF2AK2	2	37376053	5'UTR	SNP	T	TCGA-44-6147-01A-11D-1753-08	7930758	37376053	205823320	70	113945											
EPCAM	4072	broad.mit.edu	37	chr2	47612194	47612194	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttatggatagatgttaaaAttagttttttttcagatcaa	7	2	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47612194	G	G	47612194	1	3	124	0	1	0	0	0	0	0	0	0	5204	116	4	5		5	EPCAM	2	47612194	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	10236141	47612194	195587179	71	113946											
FSHR	2492	broad.mit.edu	37	chr2	49247259	49247259	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaaggttggagaacacatCtgcctctatcacctccaaga	10	11	3	2	rs140960768	byFrequency	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49247259	G	G	49247259	3	3	124	1	0	0	0	0	1	0	0	0	6133	913	32	4	1854	4	FSHR	2	49247259	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1635065	49247259	193952114	72	113947											
CCDC88A	55704	broad.mit.edu	37	chr2	55570736	55570736	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcaagtaaacataaataCaacttcatgattcgattatc	4	8	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55570736	G	G	55570736	1	3	124	0	1	0	0	0	0	0	0	0	2891	493	17	4		4	CCDC88A	2	55570736	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	6323477	55570736	187628637	73	113948											
FANCL	55120	broad.mit.edu	37	chr2	58459075	58459075	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtttcttttggggcaaaTgactaataagcattttaggc	9	5	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58459075	C	C	58459075	1	2	124	0	1	0	0	0	0	0	0	0	5727	1479	51	5		5	FANCL	2	58459075	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	2888339	58459075	184740298	74	113949											
NFU1	27247	broad.mit.edu	37	chr2	69627736	69627736	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcattgaaaaaatttaaTacagctcagagcttaaattt	4	5	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69627736	C	C	69627736	1	2	124	0	1	0	0	0	0	0	0	0	10481	1421	49	5		5	NFU1	2	69627736	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	11168661	69627736	173571637	75	113950											
ALMS1	7840	broad.mit.edu	37	chr2	73676099	73676099	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgcatactcacacagagaGaagctccttgttttctacca	7	11	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73676099	T	T	73676099	3	4	124	1	0	0	0	0	1	0	0	0	535	933	33	3	2472	3	ALMS1	2	73676099	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	4048363	73676099	169523274	76	113951											
DQX1	165545	broad.mit.edu	37	chr2	74746118	74746118	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actccccagccataattttgGccccagggagaggaataggc	11	12	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74746118	C	C	74746118	1	2	124	0	1	0	0	0	0	0	0	0	4791	1218	42	4		4	DQX1	2	74746118	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	1070019	74746118	168453255	77	113952											
SEMA4C	54910	broad.mit.edu	37	chr2	97533413	97533413	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttccaactcgagtttctTagaaagctgtgccacacacg	7	12	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97533413	C	C	97533413	1	2	124	0	1	0	0	0	0	0	0	0	14146	1769	61	5		5	SEMA4C	2	97533413	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	22787295	97533413	145665960	78	113953											
VWA3B	200403	broad.mit.edu	37	chr2	98744867	98744867	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgagtgccaagacccacAgcaggtaggcagaaaatgtg	12	9	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98744867	C	C	98744867	3	2	124	1	0	0	0	0	1	0	0	0	17368	188	7	5	886	5	VWA3B	2	98744867	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	1211454	98744867	144454506	79	113954											
TSGA10	80705	broad.mit.edu	37	chr2	99636892	99636892	+	Missense_Mutation	SNP	C	G	G													gagattctctcatttgccatCtgactcctcaggagttcaat							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99636892	G	G	99636892	3	3	124	1	0	0	0	0	1	0	0	0	16742	912	32	4	444	4	TSGA10	2	99636892	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	892025	99636892	143562481	80	113955	498	2									
TSGA10	80705	broad.mit.edu	37	chr2	99636894	99636894	+	Nonsense_Mutation	SNP	G	A	A													gattctctcatttgccatctGactcctcaggagttcaattt							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99636894	A	A	99636894	4	1	124	1	0	0	0	0	0	1	0	0	16742	1299	45	4	446	4	TSGA10	2	99636894	Nonsense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	2	99636894	143562479	81	113956	498	2									
GPR45	11250	broad.mit.edu	37	chr2	105859448	105859448	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttagggggtcagggggcCacagagaaggggcagctgag	21	6	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105859448	A	A	105859448	1	1	124	0	1	0	0	0	0	0	0	0	6761	609	21	2		2	GPR45	2	105859448	3'UTR	SNP	C	TCGA-44-6147-01A-11D-1753-08	6222554	105859448	137339925	82	113957											
MYO7B	4648	broad.mit.edu	37	chr2	128317362	128317362	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttattggtgtaagttactCaaggccaagttgaatcgctc	11	7	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128317362	G	G	128317362	1	3	124	0	1	0	0	0	0	0	0	0	10177	841	29	4		4	MYO7B	2	128317362	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	22457914	128317362	114882011	83	113958											
PTPN18	26469	broad.mit.edu	37	chr2	131130809	131130809	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggtgtaagtctaacgccaGttcctgcctgttgcctcttg	11	12	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131130809	A	A	131130809	1	1	124	0	1	0	0	0	0	0	0	0	12890	1044	36	4		4	PTPN18	2	131130809	3'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08	2813447	131130809	112068564	84	113959											
PLEKHB2	55041	broad.mit.edu	37	chr2	131936441	131936441	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcttgccgtcactcttccTctggatcttctggcagcggc	9	14	6	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131936441	G	G	131936441	1	3	124	0	1	0	0	0	0	0	0	0	12160	1566	54	5		5	PLEKHB2	2	131936441	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	805632	131936441	111262932	85	113960											
PLEKHB2	55041	broad.mit.edu	37	chr2	131949243	131949243	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaagggcacaaaggaagcCagtcatgttgatccatgcct	10	12	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131949243	T	T	131949243	1	4	124	0	1	0	0	0	0	0	0	0	12160	609	21	4		4	PLEKHB2	2	131949243	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	12802	131949243	111250130	86	113961											
LRP1B	53353	broad.mit.edu	37	chr2	141214102	141214102	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggacatgcacaagtgtgGgtttttccaggggctaaaag	15	6	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141214102	T	T	141214102	2	4	124	1	0	0	0	0	0	0	0	1	9042	1219	43	2		2	LRP1B	2	141214102	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	9264859	141214102	101985271	87	113962											
LRP1B	53353	broad.mit.edu	37	chr2	141299315	141299315	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatcagagattatacaatGaaaaaacacatttgctttct	6	6	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141299315	T	T	141299315	1	4	124	0	1	0	0	0	0	0	0	0	9042	1305	45	3		3	LRP1B	2	141299315	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	85213	141299315	101900058	88	113963											
GTDC1	79712	broad.mit.edu	37	chr2	144765120	144765120	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctgttacaaaaaaagaaTgcaatatacttttagtggaa	6	4	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144765120	G	G	144765120	1	3	124	0	1	0	0	0	0	0	0	0	6916	1479	51	5		5	GTDC1	2	144765120	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	3465805	144765120	98434253	89	113964											
GALNT13	114805	broad.mit.edu	37	chr2	155252757	155252757	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagggatttttaattagatCtgttttaaacaacttctcat	5	5	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155252757	A	A	155252757	1	1	124	0	1	0	0	0	0	0	0	0	6273	928	32	3		3	GALNT13	2	155252757	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	10487637	155252757	87946616	90	113965											
PLA2R1	22925	broad.mit.edu	37	chr2	160832630	160832630	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatgtgcagaatgaattgtGagaagatcactgtgcagcca	11	7	2	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160832630	A	A	160832630	2	1	124	1	0	0	0	0	0	0	0	1	12105	1277	45	4		4	PLA2R1	2	160832630	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	5579873	160832630	82366743	91	113966											
KCNH7	90134	broad.mit.edu	37	chr2	163693088	163693088	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctccactttcctctcttctGaccccagcaatgcctgggca	6	18	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163693088	T	T	163693088	4	4	124	1	0	0	0	0	0	1	0	0	8107	1294	45	3	3450	3	KCNH7	2	163693088	Nonsense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	2860458	163693088	79506285	92	113967											
TTN	7273	broad.mit.edu	37	chr2	179638872	179638872	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagaaaaagaatgttatgatCattttttatcaataaaccat	5	4	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179638872	G	G	179638872	1	3	124	0	1	0	0	0	0	0	0	0	16861	841	29	4		4	TTN	2	179638872	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	15945784	179638872	63560501	93	113968											
TTN	7273	broad.mit.edu	37	chr2	179641023	179641023	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcagcggaaccttgcagtCtccccttcaagtactctaac	7	15	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179641023	G	G	179641023	3	3	124	1	0	0	0	0	1	0	0	0	16861	912	32	4	105760	4	TTN	2	179641023	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	2151	179641023	63558350	94	113969											
DUSP19	142679	broad.mit.edu	37	chr2	183948268	183948268	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcatgatttggatacaCtgaaaaagaataaggtaaaa	8	5	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183948268	T	T	183948268	2	4	124	1	0	0	0	0	0	0	0	1	4858	564	20	4		4	DUSP19	2	183948268	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	4307245	183948268	59251105	95	113970											
COL5A2	1290	broad.mit.edu	37	chr2	189926230	189926230	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccatatctttttttttaAaaaaaaaaagcattttagtt	3	4	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189926230	T	T	189926230	1	4	124	0	1	0	0	0	0	0	0	0	3729	29	1	5		5	COL5A2	2	189926230	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	5977962	189926230	53273143	96	113971											
PMS1	5378	broad.mit.edu	37	chr2	190708892	190708892	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggggagttacagtggcaaGaggttagtcttttaatattt	13	3	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190708892	A	A	190708892	1	1	124	0	1	0	0	0	0	0	0	0	12237	957	33	4		4	PMS1	2	190708892	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	782662	190708892	52490481	97	113972											
DNAH7	56171	broad.mit.edu	37	chr2	196753051	196753051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataagcccattatgaattcCttttgaataacactgactga	5	8	0	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196753051	A	A	196753051	3	1	124	1	0	0	0	0	1	0	0	0	4646	680	24	2	6869	2	DNAH7	2	196753051	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	6044159	196753051	46446322	98	113973											
ZDBF2	57683	broad.mit.edu	37	chr2	207170978	207170978	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttggttgataactatggaTcgagttgttctgaaacaagt	11	5	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207170978	A	A	207170978	3	1	124	1	0	0	0	0	1	0	0	0	17725	1435	50	5	1736	5	ZDBF2	2	207170978	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	10417927	207170978	36028395	99	113974											
MAP2	4133	broad.mit.edu	37	chr2	210557723	210557723	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacggaagcaaaaaaggatGagtggggtttagttgccccc	13	8	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210557723	T	T	210557723	4	4	124	1	0	0	0	0	0	1	0	0	9327	1291	45	3	843	3	MAP2	2	210557723	Nonsense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	3386745	210557723	32641650	100	113975											
TNS1	7145	broad.mit.edu	37	chr2	218677204	218677204	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggcatgtcatgggcagtgaTactggaagccagaagggaaa	15	7	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218677204	A	A	218677204	1	1	124	0	1	0	0	0	0	0	0	0	16466	1421	49	5		5	TNS1	2	218677204	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	8119481	218677204	24522169	101	113976											
SAG	6295	broad.mit.edu	37	chr2	234247306	234247306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccatcattctccttttcCcttctgtttgggcagcatta	5	13	4	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234247306	A	A	234247306	1	1	124	0	1	0	0	0	0	0	0	0	13919	638	22	2		2	SAG	2	234247306	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	15570102	234247306	8952067	102	113977											
GRM7	2917	broad.mit.edu	37	chr3	6903372	6903372	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaacctactgcccaacgtGacgctgggcgcgcggatcct	11	17	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6903372	C	C	6903372	2	2	124	1	0	0	0	0	0	0	0	1	6868	1277	45	4		4	GRM7	3	6903372	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08		6903372	191119058	103	113978											
MTMR14	64419	broad.mit.edu	37	chr3	9726311	9726311	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatctcaggctgggatcGgacccccctcttcatctccc	8	17	4	0	rs121434509		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9726311	T	T	9726311	3	4	124	1	0	0	0	0	1	0	0	0	10036	1116	39	1	1049	1	MTMR14	3	9726311	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	2822939	9726311	188296119	104	113979											
DCLK3	85443	broad.mit.edu	37	chr3	36779750	36779750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgcatctgataatttcaCccgaggtcttttcaatctcc	5	13	6	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779750	A	A	36779750	3	1	124	1	0	0	0	0	1	0	0	0	4326	507	18	3	1561	3	DCLK3	3	36779750	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	27053439	36779750	161242680	105	113980											
NKTR	4820	broad.mit.edu	37	chr3	42674246	42674246	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggccaaaagttaaacgttCtaaaaagaggcgaaaggaag	12	5	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42674246	G	G	42674246	3	3	124	1	0	0	0	0	1	0	0	0	10543	913	32	4	734	4	NKTR	3	42674246	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	5894496	42674246	155348184	106	113981											
ABHD5	51099	broad.mit.edu	37	chr3	43743969	43743969	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtggagaatcagtttgtGgaatccattgaagagtggag	15	3	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43743969	A	A	43743969	2	1	124	1	0	0	0	0	0	0	0	1	85	1335	47	4		4	ABHD5	3	43743969	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	1069723	43743969	154278461	107	113982											
MYL3	4634	broad.mit.edu	37	chr3	46900948	46900948	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggaaggagttggggtagggGaggaggctgccctcacccag	19	8	1	0	rs34269239		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46900948	A	A	46900948	1	1	124	0	1	0	0	0	0	0	0	0	10142	1189	41	4		4	MYL3	3	46900948	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	3156979	46900948	151121482	108	113983											
LRIG1	26018	broad.mit.edu	37	chr3	66436675	66436675	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggatgtccttgcccaccaTagccatggtggtttctggct	11	13	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66436675	C	C	66436675	3	2	124	1	0	0	0	0	1	0	0	0	9031	1406	49	5	1790	5	LRIG1	3	66436675	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	19535727	66436675	131585755	109	113984											
ROBO2	6092	broad.mit.edu	37	chr3	77629248	77629248	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggggttggagtaaagagtGagccacagccaataataatc	12	7	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77629248	A	A	77629248	3	1	124	1	0	0	0	0	1	0	0	0	13625	1291	45	4	2543	4	ROBO2	3	77629248	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	11192573	77629248	120393182	110	113985											
UROC1	131669	broad.mit.edu	37	chr3	126202291	126202291	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgtccagcacgaggccgaatCccccgttgatcacctcaccc	8	19	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126202291	G	G	126202291	3	3	124	1	0	0	0	0	1	0	0	0	17154	855	30	4	227	4	UROC1	3	126202291	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	48573043	126202291	71820139	111	113986											
COPG	22820	broad.mit.edu	37	chr3	128976550	128976550	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccccaacgttttcttgcCaccctatgttcttttgtagc	5	15	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128976550	T	T	128976550	1	4	124	0	1	0	0	0	0	0	0	0	3763	609	21	4		4	COPG	3	128976550	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	2774259	128976550	69045880	112	113987											
ZIC4	84107	broad.mit.edu	37	chr3	147106605	147106605	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgagatgcggggcgctcagCtgcgcggagcgagattacct	17	11	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147106605	T	T	147106605	1	4	124	0	1	0	0	0	0	0	0	0	17807	812	28	4		4	ZIC4	3	147106605	3'UTR	SNP	C	TCGA-44-6147-01A-11D-1753-08	18130055	147106605	50915825	113	113988											
KCNAB1	7881	broad.mit.edu	37	chr3	156234123	156234123	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaaaatacggaaacggGgtgcctgaaagttccagggc	14	8	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156234123	A	A	156234123	2	1	124	1	0	0	0	0	0	0	0	1	8079	1219	43	4		4	KCNAB1	3	156234123	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	9127518	156234123	41788307	114	113989											
CCNL1	57018	broad.mit.edu	37	chr3	156870087	156870087	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtagttctttcggagtagAgttcaatgaaaaaagtaatt	10	3	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156870087	C	C	156870087	1	2	124	0	1	0	0	0	0	0	0	0	2961	319	11	5		5	CCNL1	3	156870087	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	635964	156870087	41152343	115	113990											
MECOM	2122	broad.mit.edu	37	chr3	168802634	168802634	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcagcagtcttgtaaataGtcctatatgaaagagccatg	9	8	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168802634	C	C	168802634	1	2	124	0	1	0	0	0	0	0	0	0	9515	1044	36	4		4	MECOM	3	168802634	3'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08	11932547	168802634	29219796	116	113991											
KLHL6	89857	broad.mit.edu	37	chr3	183273319	183273319	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaccttttccccatttaaGatctcgaccaagtctcctgt	5	13	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183273319	T	T	183273319	2	4	124	1	0	0	0	0	0	0	0	1	8464	932	33	3		3	KLHL6	3	183273319	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	14470685	183273319	14749111	117	113992											
VPS8	23355	broad.mit.edu	37	chr3	184544101	184544101	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attagttatcatacatgcacCtagatgcgcactttccagta	6	10	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184544101	G	G	184544101	1	3	124	0	1	0	0	0	0	0	0	0	17345	696	24	4		4	VPS8	3	184544101	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1270782	184544101	13478329	118	113993											
ATP13A4	84239	broad.mit.edu	37	chr3	193201715	193201721	+	Intron	DEL	TGGAACT	-	-													agcatatagatctaaaataaTggaacttaccttttctccca							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	193201721	-	-	193201715	6	5	124	0	1	1	0	1	0	0	0	0	1130	1479	51	0		0	ATP13A4	3	193201715	Intron	DEL	TGGAACT	TCGA-44-6147-01A-11D-1753-08	8657614	193201715	4820715	119	113994											
ACOX3	8310	broad.mit.edu	37	chr4	8428374	8428374	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagaaatattgatgccccAttgtataggagtttttctaa	7	8	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8428374	C	C	8428374	1	2	124	0	1	0	0	0	0	0	0	0	160	232	8	5		5	ACOX3	4	8428374	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08		8428374	182725902	120	113995											
GABRG1	2565	broad.mit.edu	37	chr4	46060684	46060684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagatccaaatttgataCcattgcaatgccaacattat	5	9	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46060684	A	A	46060684	1	1	124	0	1	0	0	0	0	0	0	0	6231	522	18	3		3	GABRG1	4	46060684	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	37632310	46060684	145093592	121	113996											
FRYL	285527	broad.mit.edu	37	chr4	48583536	48583536	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctacagagaatgacaagCgcaaagccttcaaccacatg	8	12	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48583536	T	T	48583536	2	4	124	1	0	0	0	0	0	0	0	1	6124	755	27	4		4	FRYL	4	48583536	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	2522852	48583536	142570740	122	113997											
KIT	3815	broad.mit.edu	37	chr4	55604558	55604558	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgctatgttcgttgtaGggactgctgtattgactatg	12	5	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55604558	A	A	55604558	1	1	124	0	1	0	0	0	0	0	0	0	8400	1015	35	4		4	KIT	4	55604558	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	7021022	55604558	135549718	123	113998											
ALB	213	broad.mit.edu	37	chr4	74270225	74270225	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaattattttggcatttaTttctaaaatggcatagtatt	6	3	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74270225	A	A	74270225	1	1	124	0	1	0	0	0	0	0	0	0	486	1508	52	5		5	ALB	4	74270225	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	18665667	74270225	116884051	124	113999											
AREG	374	broad.mit.edu	37	chr4	75312420	75312420	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagtagtgaaccgtcctcGggagccgactatgactactc	10	12	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75312420	T	T	75312420	2	4	124	1	0	0	0	0	0	0	0	1	845	1103	39	1		1	AREG	4	75312420	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	1042195	75312420	115841856	125	114000											
PARM1	25849	broad.mit.edu	37	chr4	75937931	75937931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggttctcgtcaacaagcGgtggagtccacttaacaacc	10	12	2	0	rs34305542		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75937931	A	A	75937931	3	1	124	1	0	0	0	0	1	0	0	0	11546	1116	39	4	346	4	PARM1	4	75937931	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	625511	75937931	115216345	126	114001											
UNC5C	8633	broad.mit.edu	37	chr4	96090609	96090609	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttacatatctatttttcctCagctaaacctttctgtctct	2	12	4	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96090609	G	G	96090609	1	3	124	0	1	0	0	0	0	0	0	0	17119	841	29	4		4	UNC5C	4	96090609	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	20152678	96090609	95063667	127	114002											
ANK2	287	broad.mit.edu	37	chr4	114278606	114278606	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagtgaagaaagcaaaacCcaaacagatgcaaatcacac	6	10	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114278606	A	A	114278606	2	1	124	1	0	0	0	0	0	0	0	1	621	610	22	2		2	ANK2	4	114278606	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	18187997	114278606	76875670	128	114003											
SPATA5	166378	broad.mit.edu	37	chr4	123848935	123848935	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagagtctttttcatttccTtagtttagaaatacaaactg	5	6	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123848935	G	G	123848935	1	3	124	0	1	0	0	0	0	0	0	0	15127	1624	56	5		5	SPATA5	4	123848935	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	9570329	123848935	67305341	129	114004											
FSTL5	56884	broad.mit.edu	37	chr4	162577586	162577586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agctcagaacagcactttgtCccacagttgctgcagtgatg	10	11	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162577586	T	T	162577586	3	4	124	1	0	0	0	0	1	0	0	0	6140	855	30	4	1795	4	FSTL5	4	162577586	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	38728651	162577586	28576690	130	114005											
KIAA1712	80817	broad.mit.edu	37	chr4	175220304	175220304	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacttaaaaagaagcttacGgaacctagaacaggtgctcc	9	9	0	3	rs73011419	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175220304	A	A	175220304	3	1	124	1	0	0	0	0	1	0	0	0	8323	1116	39	4	34	4	KIAA1712	4	175220304	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	12642718	175220304	15933972	131	114006											
TRIML1	339976	broad.mit.edu	37	chr4	189068534	189068534	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacgtctgaggggcgtGccctgagccgtcacagcggg	16	14	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189068534	T	T	189068534	1	4	124	0	1	0	0	0	0	0	0	0	16675	1334	46	3		3	TRIML1	4	189068534	3'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08	13848230	189068534	2085742	132	114007											
CDH6	1004	broad.mit.edu	37	chr5	31299636	31299636	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcagtaccaagtggtgattCaagccaaggatatgggcggc	14	8	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31299636	A	A	31299636	3	1	124	1	0	0	0	0	1	0	0	0	3144	827	29	3	723	3	CDH6	5	31299636	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08		31299636	149615624	133	114008											
NUP155	9631	broad.mit.edu	37	chr5	37328575	37328575	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaacatctcaatctttTgaatgtgatcaaaattaggt	6	5	3	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37328575	C	C	37328575	1	2	124	0	1	0	0	0	0	0	0	0	10851	1827	63	5		5	NUP155	5	37328575	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	6028939	37328575	143586685	134	114009											
FYB	2533	broad.mit.edu	37	chr5	39201957	39201957	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggttttgtggaatttcGtcaggtcaacatttggtggt	13	4	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39201957	A	A	39201957	3	1	124	1	0	0	0	0	1	0	0	0	6184	1145	40	4	1455	4	FYB	5	39201957	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	1873382	39201957	141713303	135	114010											
ISL1	3670	broad.mit.edu	37	chr5	50683565	50683565	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcccctgcatccagcgCggccactgcaaatggcaggt	11	15	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683565	A	A	50683565	2	1	124	1	0	0	0	0	0	0	0	1	7926	759	27	3		3	ISL1	5	50683565	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	11481608	50683565	130231695	136	114011											
FST	10468	broad.mit.edu	37	chr5	52781596	52781596	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagattatgctttaaaaaAatttttttaacttattgcat	3	4	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52781596	T	T	52781596	1	4	124	0	1	0	0	0	0	0	0	0	6136	29	1	5		5	FST	5	52781596	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	2098031	52781596	128133664	137	114012											
GZMA	3001	broad.mit.edu	37	chr5	54404187	54404187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaatgaatatggtttgtGctggaagcctccgaggtgga	15	5	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54404187	T	T	54404187	3	4	124	1	0	0	0	0	1	0	0	0	6980	1319	46	3	606	3	GZMA	5	54404187	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	1622591	54404187	126511073	138	114013											
RAB3C	115827	broad.mit.edu	37	chr5	58147149	58147149	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgagactcaaggaaactcctCctccaccgcagcccaactgt	7	17	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58147149	T	T	58147149	3	4	124	1	0	0	0	0	1	0	0	0	13041	855	30	4	673	4	RAB3C	5	58147149	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	3742962	58147149	122768111	139	114014											
SV2C	22987	broad.mit.edu	37	chr5	75491012	75491012	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttattgggaggaaattatcCcttcacacatctccttccat	5	12	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75491012	T	T	75491012	1	4	124	0	1	0	0	0	0	0	0	0	15537	638	22	4		4	SV2C	5	75491012	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	17343863	75491012	105424248	140	114015											
ELL2	22936	broad.mit.edu	37	chr5	95234413	95234413	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttttcactggtgggattCaaatgaccatttagtgttgg	11	5	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95234413	G	G	95234413	3	3	124	1	0	0	0	0	1	0	0	0	5105	825	29	4	886	4	ELL2	5	95234413	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	19743401	95234413	85680847	141	114016											
ZNF474	133923	broad.mit.edu	37	chr5	121487887	121487887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacctgggactgtgataCtatcaaaactgtcaagtaga	10	7	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121487887	A	A	121487887	3	1	124	1	0	0	0	0	1	0	0	0	18059	564	20	3	204	3	ZNF474	5	121487887	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	26253474	121487887	59427373	142	114017											
CTNNA1	1495	broad.mit.edu	37	chr5	138118888	138118888	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaacccttgtaaacaccaAtagtaaagggccctctaata	5	11	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138118888	T	T	138118888	3	4	124	1	0	0	0	0	1	0	0	0	4046	101	4	5	134	5	CTNNA1	5	138118888	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	16631001	138118888	42796372	143	114018											
PCDHA5	56143	broad.mit.edu	37	chr5	140203586	140203586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactctgttgtgctccagCgcggtggggagctggtcgta	15	12	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140203586	A	A	140203586	3	1	124	1	0	0	0	0	1	0	0	0	11621	767	27	3	2228	3	PCDHA5	5	140203586	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	2084698	140203586	40711674	144	114019											
PCDHA8	56140	broad.mit.edu	37	chr5	140220966	140220966	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctactactcttgcttctgctCctcgcagcctggaaggtggg	11	13	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140220966	A	A	140220966	2	1	124	1	0	0	0	0	0	0	0	1	11624	842	30	3		3	PCDHA8	5	140220966	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	17380	140220966	40694294	145	114020											
PCDHB11	56125	broad.mit.edu	37	chr5	140581504	140581504	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcaggaggagcagggcGgcctcggtgggaagctgctc	19	10	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140581504	T	T	140581504	2	4	124	1	0	0	0	0	0	0	0	1	11630	1103	39	1		1	PCDHB11	5	140581504	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	360538	140581504	40333756	146	114021											
ANXA6	309	broad.mit.edu	37	chr5	150509007	150509007	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacttctcatacttggtccgGaagatctcccgaatgtcgag	10	11	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150509007	A	A	150509007	2	1	124	1	0	0	0	0	0	0	0	1	722	1165	41	4		4	ANXA6	5	150509007	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	9927503	150509007	30406253	147	114022											
FAM71B	153745	broad.mit.edu	37	chr5	156593299	156593299	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaatctcctggcaccaccaCatttatcccctgcagtcctt	4	16	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156593299	T	T	156593299	1	4	124	0	1	0	0	0	0	0	0	0	5659	493	17	4		4	FAM71B	5	156593299	5'Flank	SNP	C	TCGA-44-6147-01A-11D-1753-08	6084292	156593299	24321961	148	114023											
CYFIP2	26999	broad.mit.edu	37	chr5	156786241	156786241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttactttttacctggcctGtaaaaacaaatcccaggcac	5	11	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156786241	A	A	156786241	1	1	124	0	1	0	0	0	0	0	0	0	4171	1392	48	4		4	CYFIP2	5	156786241	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	192942	156786241	24129019	149	114024											
GABRA6	2559	broad.mit.edu	37	chr5	161116336	161116336	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcttgtccactcaagtttGggagctgtaagttacaacag	10	8	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161116336	C	C	161116336	3	2	124	1	0	0	0	0	1	0	0	0	6225	1348	47	4	541	4	GABRA6	5	161116336	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	4330095	161116336	19798924	150	114025											
SLIT3	6586	broad.mit.edu	37	chr5	168199735	168199735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattattggcctctctgggGctgctgcattctgagtcaga	13	9	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168199735	T	T	168199735	1	4	124	0	1	0	0	0	0	0	0	0	14855	1218	42	3		3	SLIT3	5	168199735	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	7083399	168199735	12715525	151	114026											
CDHR2	54825	broad.mit.edu	37	chr5	176008567	176008567	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcggcaccaaagtcaatgTcaccatcactgtggaggtaa	9	12	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176008567	A	A	176008567	3	1	124	1	0	0	0	0	1	0	0	0	3149	1667	58	5	2104	5	CDHR2	5	176008567	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	7808832	176008567	4906693	152	114027											
CDHR2	54825	broad.mit.edu	37	chr5	176016319	176016319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagactgacctgcgcctccCgccttccgcaggccggtgac	11	18	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176016319	A	A	176016319	1	1	124	0	1	0	0	0	0	0	0	0	3149	667	23	1		1	CDHR2	5	176016319	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	7752	176016319	4898941	153	114028											
COL23A1	91522	broad.mit.edu	37	chr5	177715330	177715330	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatgacaaattaccgggtAgccatctcgtcctgattgcc	8	11	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177715330	G	G	177715330	3	3	124	1	0	0	0	0	1	0	0	0	3714	420	15	5	1286	5	COL23A1	5	177715330	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	1699011	177715330	3199930	154	114029											
TBC1D9B	23061	broad.mit.edu	37	chr5	179301942	179301942	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgccctcgtcgctgcagcCcagcagctgctccatgttgg	11	17	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179301942	T	T	179301942	3	4	124	1	0	0	0	0	1	0	0	0	15750	623	22	4	1650	4	TBC1D9B	5	179301942	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1586612	179301942	1613318	155	114030											
GCM2	9247	broad.mit.edu	37	chr6	10874219	10874219	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cactgctattatgtcccctgGattgtctttcaaaaatcctc	5	12	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10874219	T	T	10874219	1	4	124	0	1	0	0	0	0	0	0	0	6360	1189	41	3		3	GCM2	6	10874219	3'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08		10874219	160240848	156	114031											
CAP2	10486	broad.mit.edu	37	chr6	17531652	17531652	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgccagcttttcttgccatCctcgccatttgaatttcagt	6	12	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17531652	G	G	17531652	1	3	124	0	1	0	0	0	0	0	0	0	2646	870	30	4		4	CAP2	6	17531652	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	6657433	17531652	153583415	157	114032											
SCAND3	114821	broad.mit.edu	37	chr6	28541214	28541214	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatgaagcccgcaaagcacTaatgtttatatgagaaacgt	8	7	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28541214	A	A	28541214	3	1	124	1	0	0	0	0	1	0	0	0	13988	1522	53	5	1529	5	SCAND3	6	28541214	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	11009562	28541214	142573853	158	114033											
SKIV2L	6499	broad.mit.edu	37	chr6	31935558	31935558	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgataagcccttgtcccagGacccacaggacagggggcca	13	13	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31935558	T	T	31935558	3	4	124	1	0	0	0	0	1	0	0	0	14472	1174	41	3	2736	3	SKIV2L	6	31935558	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	3394344	31935558	139179509	159	114034											
TULP1	7287	broad.mit.edu	37	chr6	35466187	35466187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgggtaccggtagtctaGggtgaaggcgtcctccgcca	15	12	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35466187	T	T	35466187	3	4	124	1	0	0	0	0	1	0	0	0	16899	991	35	2	86	2	TULP1	6	35466187	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	3530629	35466187	135648880	160	114035											
GUCA1B	2979	broad.mit.edu	37	chr6	42162321	42162321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggcgccaggtggactgGccactggtccttcccttcag	14	13	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42162321	A	A	42162321	1	1	124	0	1	0	0	0	0	0	0	0	6954	1218	42	4		4	GUCA1B	6	42162321	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	6696134	42162321	128952746	161	114036											
GPR116	221395	broad.mit.edu	37	chr6	46839842	46839842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttttttcataaaaggaGttactatttaaatagatttc	4	3	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46839842	T	T	46839842	1	4	124	0	1	0	0	0	0	0	0	0	6698	1044	36	3		3	GPR116	6	46839842	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	4677521	46839842	124275225	162	114037											
GPR111	222611	broad.mit.edu	37	chr6	47647951	47647951	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacattcagcagtctcccTggataccaggaaacattgcc	8	12	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47647951	A	A	47647951	3	1	124	1	0	0	0	0	1	0	0	0	6693	1580	55	5	426	5	GPR111	6	47647951	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	808109	47647951	123467116	163	114038											
RHAG	6005	broad.mit.edu	37	chr6	49582478	49582478	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcagcgagagagaagtaCgtgtttacaatggccctgca	13	9	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49582478	A	A	49582478	2	1	124	1	0	0	0	0	0	0	0	1	13424	523	19	3		3	RHAG	6	49582478	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	1934527	49582478	121532589	164	114039											
GSTA1	2938	broad.mit.edu	37	chr6	52671384	52671384	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagatcccaagatgggagatGaggagctgcctcttgaggac	14	8	1	5			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52671384	T	T	52671384	1	4	124	0	1	0	0	0	0	0	0	0	6896	1305	45	3		3	GSTA1	6	52671384	5'Flank	SNP	G	TCGA-44-6147-01A-11D-1753-08	3088906	52671384	118443683	165	114040											
FAM83B	222584	broad.mit.edu	37	chr6	54805254	54805254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtcattcctacgtaactgGagaattgaatcctacttaaa	6	8	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54805254	T	T	54805254	3	4	124	1	0	0	0	0	1	0	0	0	5687	1183	41	3	1499	3	FAM83B	6	54805254	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	2133870	54805254	116309813	166	114041											
COL19A1	1310	broad.mit.edu	37	chr6	70916660	70916660	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaattgggctgccagggagTccaggtcttcctgggacttc	15	10	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70916660	C	C	70916660	2	2	124	1	0	0	0	0	0	0	0	1	3708	1664	58	5		5	COL19A1	6	70916660	Silent	SNP	T	TCGA-44-6147-01A-11D-1753-08	16111406	70916660	100198407	167	114042											
PREP	5550	broad.mit.edu	37	chr6	105781267	105781267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaagtcaatgttgatcaCgcgatagttgggagactggc	13	8	2	3	rs144257084		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105781267	A	A	105781267	3	1	124	1	0	0	0	0	1	0	0	0	12580	536	19	3	1227	3	PREP	6	105781267	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	34864607	105781267	65333800	168	114043											
RFX6	222546	broad.mit.edu	37	chr6	117248123	117248123	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaataaatcttttgaatatTttttaaagatgtgagctcat	5	3	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117248123	A	A	117248123	1	1	124	0	1	0	0	0	0	0	0	0	13375	1856	64	5		5	RFX6	6	117248123	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	11466856	117248123	53866944	169	114044											
SLC35F1	222553	broad.mit.edu	37	chr6	118598587	118598587	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatctgataagtgggggggAaaaaagaaagaaagaaagta	13	2	1	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118598587	G	G	118598587	1	3	124	0	1	0	0	0	0	0	0	0	14702	261	9	5		5	SLC35F1	6	118598587	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	1350464	118598587	52516480	170	114045											
SGK1	6446	broad.mit.edu	37	chr6	134638606	134638606	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtttaccattttccacCgtggggaattcacagttata	7	9	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134638606	T	T	134638606	1	4	124	0	1	0	0	0	0	0	0	0	14320	667	23	4		4	SGK1	6	134638606	5'UTR	SNP	C	TCGA-44-6147-01A-11D-1753-08	16040019	134638606	36476461	171	114046											
C6orf118	168090	broad.mit.edu	37	chr6	165703320	165703320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacattacttcatgtgtttgCcaaggtcttcaagcaaaaga	7	9	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165703320	A	A	165703320	1	1	124	0	1	0	0	0	0	0	0	0	2346	754	26	3		3	C6orf118	6	165703320	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	31064714	165703320	5411747	172	114047											
SMOC2	64094	broad.mit.edu	37	chr6	168947573	168947573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattttccacgtgaagttaGgtcagtgtctagcctcgagc	10	9	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168947573	T	T	168947573	1	4	124	0	1	0	0	0	0	0	0	0	14916	1015	35	2		2	SMOC2	6	168947573	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	3244253	168947573	2167494	173	114048											
MIOS	54468	broad.mit.edu	37	chr7	7629038	7629038	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactttaaattttccagttAaatagatacatcgaaaagtt	4	6	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7629038	T	T	7629038	3	4	124	1	0	0	0	0	1	0	0	0	9682	359	13	5	1909	5	MIOS	7	7629038	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08		7629038	151509625	174	114049											
SNX13	23161	broad.mit.edu	37	chr7	17838743	17838743	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaatacttcatccatgagaAgcagcattaccctaagtgga	8	10	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17838743	G	G	17838743	3	3	124	1	0	0	0	0	1	0	0	0	14998	72	3	5	556	5	SNX13	7	17838743	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	10209705	17838743	141299920	175	114050											
HDAC9	9734	broad.mit.edu	37	chr7	18630139	18630139	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accagggtaaacgatggactCtctttcctcatcgttagctg	9	11	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18630139	G	G	18630139	1	3	124	0	1	0	0	0	0	0	0	0	7081	928	32	4		4	HDAC9	7	18630139	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	791396	18630139	140508524	176	114051											
GPR141	353345	broad.mit.edu	37	chr7	37780032	37780032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctccaggaattcctcttgcGatcctatagtgacaccccac	6	16	1	1	rs141399721	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37780032	T	T	37780032	3	4	124	1	0	0	0	0	1	0	0	0	6714	1058	37	3	39	3	GPR141	7	37780032	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	19149893	37780032	121358631	177	114052											
EPDR1	54749	broad.mit.edu	37	chr7	37988642	37988642	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcggacagaaagtcagCtagatcctgtaagggttcaa	13	7	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37988642	G	G	37988642	3	3	124	1	0	0	0	0	1	0	0	0	5205	797	28	4	836	4	EPDR1	7	37988642	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	208610	37988642	121150021	178	114053											
EGFR	1956	broad.mit.edu	37	chr7	55249005	55249005	+	Missense_Mutation	SNP	G	T	T													ggaagcctacgtgatggccaGcgtggacaacccccacgtgt					rs146024686		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55249005	T	T	55249005	3	4	124	1	0	0	0	0	1	0	0	0	5007	971	34	3	2645	3	EGFR	7	55249005	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	17260363	55249005	103889658	179	114054	499	2									
EGFR	1956	broad.mit.edu	37	chr7	55249007	55249007	+	Missense_Mutation	SNP	G	T	T													aagcctacgtgatggccagcGtggacaacccccacgtgtgc					rs147149347		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55249007	T	T	55249007	3	4	124	1	0	0	0	0	1	0	0	0	5007	1145	40	3	2647	3	EGFR	7	55249007	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	2	55249007	103889656	180	114055	499	2									
EGFR	1956	broad.mit.edu	37	chr7	55249253	55249253	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcgctcctgggatagcaagAgtttgccatggggatatgtg	15	7	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55249253	T	T	55249253	1	4	124	0	1	0	0	0	0	0	0	0	5007	319	11	5		5	EGFR	7	55249253	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	246	55249253	103889410	181	114056											
SEPT14	346288	broad.mit.edu	37	chr7	55902059	55902059	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaattaaaaattctcacacTggattctggataaacactca	4	8	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55902059	A	A	55902059	1	1	124	0	1	0	0	0	0	0	0	0	14176	1595	55	5		5	SEPT14	7	55902059	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	652806	55902059	103236604	182	114057											
KCTD7	154881	broad.mit.edu	37	chr7	66103260	66103260	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgtgctgaatttcctgcGctcaggggacctcccaccca	10	14	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66103260	A	A	66103260	3	1	124	1	0	0	0	0	1	0	0	0	8184	1087	38	4	345	4	KCTD7	7	66103260	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	10201201	66103260	93035403	183	114058											
WBSCR17	64409	broad.mit.edu	37	chr7	71036410	71036410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgacatggtgtcccttcCtcttggtgtgcccatgtttg	11	10	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71036410	A	A	71036410	1	1	124	0	1	0	0	0	0	0	0	0	17391	696	24	2		2	WBSCR17	7	71036410	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	4933150	71036410	88102253	184	114059											
BCL7B	9275	broad.mit.edu	37	chr7	72954202	72954202	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaactcatcctcggccaacCacgactcaccctccaggatc	6	18	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72954202	G	G	72954202	1	3	124	0	1	0	0	0	0	0	0	0	1384	609	21	4		4	BCL7B	7	72954202	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1917792	72954202	86184461	185	114060											
MAGI2	9863	broad.mit.edu	37	chr7	77975064	77975064	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctataacttcatctgcggTtgctaaaggcattagtttag	10	7	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77975064	A	A	77975064	1	1	124	0	1	0	0	0	0	0	0	0	9283	1740	60	5		5	MAGI2	7	77975064	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	5020862	77975064	81163599	186	114061											
SEMA3D	223117	broad.mit.edu	37	chr7	84727327	84727328	+	Intron	DNP	GA	CT	CT													aaggagaaagaaaaaagaaaGaaagaaagagaaagaaagga							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	84727328	CT	CT	84727327	1	2	124	0	1	0	0	0	0	0	0	0	14140	957	33	4		4	SEMA3D	7	84727327	Intron	DNP	GA	TCGA-44-6147-01A-11D-1753-08	6752263	84727327	74411336	187	114062											
PEX1	5189	broad.mit.edu	37	chr7	92147358	92147358	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggtattagtgcaacTgtgtagaaaataaagctcat	10	6	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92147358	A	A	92147358	5	1	124	1	0	0	0	0	0	0	1	0	11830	1594	55	5	3460	5	PEX1	7	92147358	Splice_Site	SNP	T	TCGA-44-6147-01A-11D-1753-08	7420031	92147358	66991305	188	114063											
DYNC1I1	1780	broad.mit.edu	37	chr7	95457218	95457218	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatttctcttgtttgatagTcactgggggtggaggggatg	16	5	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95457218	A	A	95457218	1	1	124	0	1	0	0	0	0	0	0	0	4882	1682	58	5		5	DYNC1I1	7	95457218	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	3309860	95457218	63681445	189	114064											
TRRAP	8295	broad.mit.edu	37	chr7	98498314	98498314	+	Frame_Shift_Del	DEL	T	-	-													ctcagattaaaacattgtcaTttttagcttacattatcagg							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98498314	-	-	98498314	7	5	124	1	0	1	0	1	0	0	0	0	16726	1493	52	0	906	0	TRRAP	7	98498314	Frame_Shift_Del	DEL	T	TCGA-44-6147-01A-11D-1753-08	3041096	98498314	60640349	190	114065											
MUC17	140453	broad.mit.edu	37	chr7	100686537	100686537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcccagcactcctgtcaCcagttctactgctgatgtct	6	14	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100686537	A	A	100686537	3	1	124	1	0	0	0	0	1	0	0	0	10068	507	18	3	11850	3	MUC17	7	100686537	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	2188223	100686537	58452126	191	114066											
RELN	5649	broad.mit.edu	37	chr7	103275853	103275853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactctacaaccatttttcCaaatgctttccaacatacct	1	14	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103275853	A	A	103275853	1	1	124	0	1	0	0	0	0	0	0	0	13328	609	21	2		2	RELN	7	103275853	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	2589316	103275853	55862810	192	114067											
SLC26A4	5172	broad.mit.edu	37	chr7	107303519	107303519	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaatgtgagcgaggggtggGacacttaatcctgtgttctc	13	7	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107303519	C	C	107303519	1	2	124	0	1	0	0	0	0	0	0	0	14633	1189	41	4		4	SLC26A4	7	107303519	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	4027666	107303519	51835144	193	114068											
LAMB4	22798	broad.mit.edu	37	chr7	107692568	107692568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcttgcattaaggacactgGattgcaaatcaatttcttcc	7	9	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107692568	T	T	107692568	3	4	124	1	0	0	0	0	1	0	0	0	8685	1174	41	3	1431	3	LAMB4	7	107692568	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	389049	107692568	51446095	194	114069											
LAMB4	22798	broad.mit.edu	37	chr7	107732056	107732056	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacagtctgtagggaaagtAaatgaaatacgaaccaaagg	10	6	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107732056	T	T	107732056	1	4	124	0	1	0	0	0	0	0	0	0	8685	377	13	5		5	LAMB4	7	107732056	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	39488	107732056	51406607	195	114070											
NRCAM	4897	broad.mit.edu	37	chr7	107800774	107800774	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatggattattatgtagcAttataaagcaattttaatct	5	3	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107800774	T	T	107800774	1	4	124	0	1	0	0	0	0	0	0	0	10739	232	8	5		5	NRCAM	7	107800774	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	68718	107800774	51337889	196	114071											
NRCAM	4897	broad.mit.edu	37	chr7	107824775	107824775	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggaagttaagcagccacAcatgtgtaagctttggcctt	10	9	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107824775	T	T	107824775	1	4	124	0	1	0	0	0	0	0	0	0	10739	174	6	5		5	NRCAM	7	107824775	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	24001	107824775	51313888	197	114072											
PNPLA8	50640	broad.mit.edu	37	chr7	108119758	108119758	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcactctaacggcacatcTggccaaagacatttacactc	6	13	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108119758	C	C	108119758	2	2	124	1	0	0	0	0	0	0	0	1	12266	1567	55	5		5	PNPLA8	7	108119758	Silent	SNP	T	TCGA-44-6147-01A-11D-1753-08	294983	108119758	51018905	198	114073											
CTTNBP2	83992	broad.mit.edu	37	chr7	117400700	117400700	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttttcacattccaagtcAtcagaaccatagttgcttgg	8	9	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117400700	C	C	117400700	3	2	124	1	0	0	0	0	1	0	0	0	4079	214	8	5	2086	5	CTTNBP2	7	117400700	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	9280942	117400700	41737963	199	114074											
ANKRD7	56311	broad.mit.edu	37	chr7	117876025	117876025	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttatgcacacatattttaaGttgaacttaaatctaaagag	5	6	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117876025	C	C	117876025	1	2	124	0	1	0	0	0	0	0	0	0	686	1044	36	4		4	ANKRD7	7	117876025	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	475325	117876025	41262638	200	114075											
CPA4	51200	broad.mit.edu	37	chr7	129939236	129939236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtacgcagtgacaattgagGacctgcaggtaggtagacta	13	7	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129939236	T	T	129939236	3	4	124	1	0	0	0	0	1	0	0	0	3824	1174	41	3	287	3	CPA4	7	129939236	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	12063211	129939236	29199427	201	114076											
EXOC4	60412	broad.mit.edu	37	chr7	133622733	133622733	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccttcgtgacgtcagtgAcctcaaagccttggccaaca	8	14	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133622733	T	T	133622733	3	4	124	1	0	0	0	0	1	0	0	0	5348	275	10	5	2180	5	EXOC4	7	133622733	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	3683497	133622733	25515930	202	114077											
DGKI	9162	broad.mit.edu	37	chr7	137150612	137150612	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcgaaccagacatggatgtCaccctaaggccagcctcaca	10	14	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137150612	T	T	137150612	1	4	124	0	1	0	0	0	0	0	0	0	4511	841	29	4		4	DGKI	7	137150612	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	3527879	137150612	21988051	203	114078											
MGAM	8972	broad.mit.edu	37	chr7	141730170	141730170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattctttcaggatgttcaGcatgctgatattgattatat	7	5	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141730170	T	T	141730170	3	4	124	1	0	0	0	0	1	0	0	0	9634	962	34	3	1268	3	MGAM	7	141730170	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	4579558	141730170	17408493	204	114079											
TRYX3	136541	broad.mit.edu	37	chr7	141955210	141955210	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctctattatccctcccCacagacctttttctgtaccc	4	17	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141955210	A	A	141955210	1	1	124	0	1	0	0	0	0	0	0	0	16729	609	21	2		2	TRYX3	7	141955210	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	225040	141955210	17183453	205	114080											
ASB10	136371	broad.mit.edu	37	chr7	150884096	150884096	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacgatgggtcccgggccaGacttgaggtgctcctcagac	14	12	1	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150884096	C	C	150884096	3	2	124	1	0	0	0	0	1	0	0	0	1018	942	33	4	1301	4	ASB10	7	150884096	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	8928886	150884096	8254567	206	114081											
PTPRN2	5799	broad.mit.edu	37	chr7	157926709	157926709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaagagtcgagacccgtGgtcctgcaggaggcccccga	15	12	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157926709	A	A	157926709	3	1	124	1	0	0	0	0	1	0	0	0	12916	1348	47	4	1891	4	PTPRN2	7	157926709	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	7042613	157926709	1211954	207	114082											
PTPRN2	5799	broad.mit.edu	37	chr7	158109655	158109655	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaggagataagacagaacGagacgtttcattttcagaga	12	5	2	5			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158109655	A	A	158109655	1	1	124	0	1	0	0	0	0	0	0	0	12916	1073	37	4		4	PTPRN2	7	158109655	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	182946	158109655	1029008	208	114083											
UNC5D	137970	broad.mit.edu	37	chr8	35624454	35624454	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtgtggtgcagtaaccGgcagcccctgcactgtgcct	13	15	0	0	rs112851152		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35624454	A	A	35624454	3	1	124	1	0	0	0	0	1	0	0	0	17121	1116	39	4	2406	4	UNC5D	8	35624454	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08		35624454	110739568	209	114084											
KCNU1	157855	broad.mit.edu	37	chr8	36792969	36792969	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgacctctttatttgggtCactgcctgttgccacactgg	9	11	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36792969	T	T	36792969	1	4	124	0	1	0	0	0	0	0	0	0	8163	841	29	4		4	KCNU1	8	36792969	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1168515	36792969	109571053	210	114085											
ADAM18	8749	broad.mit.edu	37	chr8	39521223	39521223	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtataactacaagtttgtaCacaacagaatattaaattga	5	5	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39521223	G	G	39521223	1	3	124	0	1	0	0	0	0	0	0	0	239	493	17	4		4	ADAM18	8	39521223	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	2728254	39521223	106842799	211	114086											
ADAM18	8749	broad.mit.edu	37	chr8	39537627	39537627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagtgacgctcaatctaCagtttattcatatattcaag	5	7	4	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39537627	A	A	39537627	3	1	124	1	0	0	0	0	1	0	0	0	239	478	17	3	1765	3	ADAM18	8	39537627	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	16404	39537627	106826395	212	114087											
ANK1	286	broad.mit.edu	37	chr8	41572528	41572528	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgggtgtgcgtcccgctccAgcagcagctctgccacccgc	12	18	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41572528	T	T	41572528	3	4	124	1	0	0	0	0	1	0	0	0	620	188	7	5	4444	5	ANK1	8	41572528	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	2034901	41572528	104791494	213	114088											
SNTG1	54212	broad.mit.edu	37	chr8	51664733	51664733	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatgccattaaggaacaaaGaggggaaactttcggggaat	12	5	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51664733	C	C	51664733	1	2	124	0	1	0	0	0	0	0	0	0	14988	957	33	4		4	SNTG1	8	51664733	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	10092205	51664733	94699289	214	114089											
PCMTD1	115294	broad.mit.edu	37	chr8	52732893	52732894	+	3'UTR	INS	-	C	C													aggaattatcagtaggcattINStttcttcttgatctaagtta					rs138060787	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52732894	C	C	52732893	6	5	124	0	1	1	1	0	0	0	0	0	11680	1856	64	0		0	PCMTD1	8	52732893	3'UTR	INS	-	TCGA-44-6147-01A-11D-1753-08	1068160	52732893	93631129	215	114090											
PREX2	80243	broad.mit.edu	37	chr8	68965476	68965476	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaagaaagagaacggcGgaaaggtgggtgtatgaatt	15	2	0	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68965476	A	A	68965476	3	1	124	1	0	0	0	0	1	0	0	0	12583	1116	39	4	1122	4	PREX2	8	68965476	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	16232583	68965476	77398546	216	114091											
GDAP1	54332	broad.mit.edu	37	chr8	75272325	75272325	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttgcttttgagtgtaacAactcatgtgtaactttttct	7	6	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75272325	G	G	75272325	1	3	124	0	1	0	0	0	0	0	0	0	6370	145	5	5		5	GDAP1	8	75272325	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	6306849	75272325	71091697	217	114092											
CCNE2	9134	broad.mit.edu	37	chr8	95897175	95897175	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttatgcgtcaaaagttttGttctagaattaaggagtgaa	9	4	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95897175	C	C	95897175	1	2	124	0	1	0	0	0	0	0	0	0	2951	1392	48	4		4	CCNE2	8	95897175	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	20624850	95897175	50466847	218	114093											
PKHD1L1	93035	broad.mit.edu	37	chr8	110397739	110397739	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagattttcttacacagaatCtttttggggtttttgtttgt	8	4	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110397739	A	A	110397739	1	1	124	0	1	0	0	0	0	0	0	0	12067	928	32	3		3	PKHD1L1	8	110397739	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	14500564	110397739	35966283	219	114094											
CSMD3	114788	broad.mit.edu	37	chr8	113323246	113323246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatcccatgcatgataccCataggaagactttctgcaca	7	13	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113323246	A	A	113323246	3	1	124	1	0	0	0	0	1	0	0	0	3980	594	21	2	3365	2	CSMD3	8	113323246	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	2925507	113323246	33040776	220	114095											
CSMD3	114788	broad.mit.edu	37	chr8	113563023	113563023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactaatttcctttaaaaGcatatcattttctggtggac	5	9	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113563023	T	T	113563023	3	4	124	1	0	0	0	0	1	0	0	0	3980	971	34	3	6862	3	CSMD3	8	113563023	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	239777	113563023	32800999	221	114096											
RAD21	5885	broad.mit.edu	37	chr8	117866438	117866438	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttagaatcttttttttttaGatgctcaaaatgtatatgaa	5	3	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117866438	C	C	117866438	1	2	124	0	1	0	0	0	0	0	0	0	13089	957	33	4		4	RAD21	8	117866438	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	4303415	117866438	28497584	222	114097											
TG	7038	broad.mit.edu	37	chr8	134031860	134031860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagggccagctgctggCagccaggcaccagaacatcc	12	15	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134031860	A	A	134031860	3	1	124	1	0	0	0	0	1	0	0	0	15936	711	25	3	6950	3	TG	8	134031860	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	16165422	134031860	12332162	223	114098											
TG	7038	broad.mit.edu	37	chr8	134125651	134125651	+	Intron	DEL	T	-	-													caactgaggaatttcgtatcTttttttttttctagcaattt					rs72433148		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134125651	-	-	134125651	6	5	124	0	1	1	0	1	0	0	0	0	15936	1624	56	0		0	TG	8	134125651	Intron	DEL	T	TCGA-44-6147-01A-11D-1753-08	93791	134125651	12238371	224	114099											
COL22A1	169044	broad.mit.edu	37	chr8	139611019	139611019	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggggtccaactggtccattCtccccaggtagtccttgggg	14	12	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139611019	T	T	139611019	2	4	124	1	0	0	0	0	0	0	0	1	3713	912	32	4		4	COL22A1	8	139611019	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	5485368	139611019	6753003	225	114100											
COL22A1	169044	broad.mit.edu	37	chr8	139631546	139631546	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctatgtagtgtggcaaagcTgaattgaccgcacagaagca	12	8	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139631546	G	G	139631546	1	3	124	0	1	0	0	0	0	0	0	0	3713	1595	55	5		5	COL22A1	8	139631546	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	20527	139631546	6732476	226	114101											
COL22A1	169044	broad.mit.edu	37	chr8	139631568	139631568	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattgaccgcacagaagcacAgccgtctggaggagaaggac	13	10	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139631568	T	T	139631568	1	4	124	0	1	0	0	0	0	0	0	0	3713	203	7	5		5	COL22A1	8	139631568	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	22	139631568	6732454	227	114102											
COL22A1	169044	broad.mit.edu	37	chr8	139767679	139767679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtggcttttctgtttctGctgtgacctaaatccccatg	9	10	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139767679	T	T	139767679	1	4	124	0	1	0	0	0	0	0	0	0	3713	1334	46	3		3	COL22A1	8	139767679	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	136111	139767679	6596343	228	114103											
TSNARE1	203062	broad.mit.edu	37	chr8	143427140	143427140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacaataggcgtgcctgCtggccccagatcaccttccc	11	15	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143427140	A	A	143427140	3	1	124	1	0	0	0	0	1	0	0	0	16755	797	28	3	1383	3	TSNARE1	8	143427140	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	3659461	143427140	2936882	229	114104											
MLLT3	4300	broad.mit.edu	37	chr9	20354921	20354921	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaaattttatttcaagcaTctcttagctaaccagccacc	4	11	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20354921	A	A	20354921	1	1	124	0	1	0	0	0	0	0	0	0	9721	1450	50	5		5	MLLT3	9	20354921	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08		20354921	120858510	230	114105											
IFNA16	3449	broad.mit.edu	37	chr9	21216620	21216620	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactcctgaaaacatttgaAaattttgattcaacttgtgg	6	7	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21216620	G	G	21216620	1	3	124	0	1	0	0	0	0	0	0	0	7605	29	1	5		5	IFNA16	9	21216620	3'UTR	SNP	A	TCGA-44-6147-01A-11D-1753-08	861699	21216620	119996811	231	114106											
FAM75A3	727830	broad.mit.edu	37	chr9	40702749	40702749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcacctgatggagcctccCagtcctctcatgagcctatg	10	14	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702749	A	A	40702749	3	1	124	1	0	0	0	0	1	0	0	0	5672	595	21	2	420	2	FAM75A3	9	40702749	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	19486129	40702749	100510682	232	114107											
SECISBP2	79048	broad.mit.edu	37	chr9	91949687	91949687	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtaggatggtggttgccaGgggctcagtagagtggggaa	19	4	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91949687	C	C	91949687	1	2	124	0	1	0	0	0	0	0	0	0	14119	1015	35	4		4	SECISBP2	9	91949687	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	51246938	91949687	49263744	233	114108											
TLR4	7099	broad.mit.edu	37	chr9	120474988	120474988	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagtatttattgcacagaCttgcgggttctacatcaaat	7	8	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120474988	G	G	120474988	3	3	124	1	0	0	0	0	1	0	0	0	16076	564	20	4	592	4	TLR4	9	120474988	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	28525301	120474988	20738443	234	114109											
OR1J2	26740	broad.mit.edu	37	chr9	125273566	125273566	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctctctcacacccttctCctgacccggctgtctttctg	5	19	5	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125273566	A	A	125273566	2	1	124	1	0	0	0	0	0	0	0	1	11054	842	30	3		3	OR1J2	9	125273566	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	4798578	125273566	15939865	235	114110											
OR1J2	26740	broad.mit.edu	37	chr9	125274082	125274082	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcatgtatttgattttcCatttgaatatgtctcaaaac	4	7	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125274082	T	T	125274082	1	4	124	0	1	0	0	0	0	0	0	0	11054	609	21	4		4	OR1J2	9	125274082	3'UTR	SNP	C	TCGA-44-6147-01A-11D-1753-08	516	125274082	15939349	236	114111											
ZNF79	7633	broad.mit.edu	37	chr9	130198191	130198191	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcccgttgaataggactTccagtttcccagcctggcat	8	12	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130198191	G	G	130198191	2	3	124	1	0	0	0	0	0	0	0	1	18290	1770	62	5		5	ZNF79	9	130198191	Silent	SNP	T	TCGA-44-6147-01A-11D-1753-08	4924109	130198191	11015240	237	114112											
ODF2	4957	broad.mit.edu	37	chr9	131243982	131243982	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtacaggtggcaagagcgtCgttccactacaaagtgtaga	13	8	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131243982	T	T	131243982	1	4	124	0	1	0	0	0	0	0	0	0	10922	899	31	4		4	ODF2	9	131243982	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1045791	131243982	9969449	238	114113											
TOR1B	27348	broad.mit.edu	37	chr9	132571440	132571440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaaagtcaggaattttctTagggcatactgtgctagaaa	10	6	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132571440	C	C	132571440	1	2	124	0	1	0	0	0	0	0	0	0	16498	1769	61	5		5	TOR1B	9	132571440	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	1327458	132571440	8641991	239	114114											
RAPGEF1	2889	broad.mit.edu	37	chr9	134505586	134505586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagactttgccactgagCgtgacacccgcgacacgagg	13	13	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134505586	A	A	134505586	1	1	124	0	1	0	0	0	0	0	0	0	13151	783	27	3		3	RAPGEF1	9	134505586	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1934146	134505586	6707845	240	114115											
SETX	23064	broad.mit.edu	37	chr9	135224674	135224674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattcatctcttgctttgtGgtactcagccacacactcca	5	14	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135224674	T	T	135224674	3	4	124	1	0	0	0	0	1	0	0	0	14254	1348	47	2	7987	2	SETX	9	135224674	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	719088	135224674	5988757	241	114116											
WDR5	11091	broad.mit.edu	37	chr9	137004980	137004980	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctccacccttgtctcctGtgcggccagcgtcagagcca	9	18	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137004980	C	C	137004980	1	2	124	0	1	0	0	0	0	0	0	0	17430	1392	48	4		4	WDR5	9	137004980	5'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08	1780306	137004980	4208451	242	114117											
KCNT1	57582	broad.mit.edu	37	chr9	138657030	138657030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgagttctacgcccacCcccggctccaggtgaggccc	11	17	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138657030	A	A	138657030	3	1	124	1	0	0	0	0	1	0	0	0	8161	623	22	2	1235	2	KCNT1	9	138657030	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1652050	138657030	2556401	243	114118											
PFKP	5214	broad.mit.edu	37	chr10	3143712	3143712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaacctcttccggaaggaGtggagtgggctgctggagga	17	9	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3143712	T	T	3143712	3	4	124	1	0	0	0	0	1	0	0	0	11861	1020	36	3	434	3	PFKP	10	3143712	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08		3143712	132391035	244	114119											
ITGA8	8516	broad.mit.edu	37	chr10	15688901	15688902	+	Missense_Mutation	DNP	CC	AA	AA													ccatagcactaccgaatctcCcaaacgtctcggtgccagtg							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	15688902	AA	AA	15688901	3	1	124	1	0	0	0	0	1	0	0	0	7952	623	22	2	2116	2	ITGA8	10	15688901	Missense_Mutation	DNP	CC	TCGA-44-6147-01A-11D-1753-08	12545189	15688901	119845846	245	114120											
ITGA8	8516	broad.mit.edu	37	chr10	15697459	15697459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaaaagtcatttttgtaGtcatgtctctattattcctg	5	8	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15697459	T	T	15697459	1	4	124	0	1	0	0	0	0	0	0	0	7952	1044	36	3		3	ITGA8	10	15697459	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	8558	15697459	119837288	246	114121											
KIAA1217	56243	broad.mit.edu	37	chr10	24809201	24809201	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtaaactttctgctgggtCgggggaggagtctgagctgt	17	6	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24809201	T	T	24809201	1	4	124	0	1	0	0	0	0	0	0	0	8286	899	31	4		4	KIAA1217	10	24809201	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	9111742	24809201	110725546	247	114122											
MAPK8	5599	broad.mit.edu	37	chr10	49632510	49632510	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctttctttttttttttAttttaaccaaaatctttatg	1	5	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49632510	T	T	49632510	1	4	124	0	1	0	0	0	0	0	0	0	9375	464	16	5		5	MAPK8	10	49632510	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	24823309	49632510	85902237	248	114123											
DRGX	644168	broad.mit.edu	37	chr10	50594941	50594941	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatacacccagtgaaaatCaaacaggaggaagaagccag	9	9	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50594941	A	A	50594941	1	1	124	0	1	0	0	0	0	0	0	0	4803	841	29	3		3	DRGX	10	50594941	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	962431	50594941	84939806	249	114124											
DNA2	1763	broad.mit.edu	37	chr10	70191626	70191644	+	Frame_Shift_Del	DEL	CATATCGTAGTTGTTTTTC	-	-													ataataaccttacgagagtaCatatcgtagttgtttttcct					rs61855090	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70191644	-	-	70191626	7	5	124	1	0	1	0	1	0	0	0	0	4636	478	17	0	1242	0	DNA2	10	70191626	Frame_Shift_Del	DEL	CATATCGTAGTTGTTTTTC	TCGA-44-6147-01A-11D-1753-08	19596685	70191626	65343121	250	114125											
DDX50	79009	broad.mit.edu	37	chr10	70700750	70700750	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaagtcttgaaggattataGagttagaatttcattgtact	8	3	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70700750	C	C	70700750	1	2	124	0	1	0	0	0	0	0	0	0	4401	957	33	4		4	DDX50	10	70700750	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	509124	70700750	64833997	251	114126											
COL13A1	1305	broad.mit.edu	37	chr10	71654284	71654284	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcttctgtctgcccactgaCctgtgtgtgtttgcttccca	9	13	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71654284	G	G	71654284	1	3	124	0	1	0	0	0	0	0	0	0	3702	522	18	4		4	COL13A1	10	71654284	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	953534	71654284	63880463	252	114127											
ADAMTS14	140766	broad.mit.edu	37	chr10	72511833	72511833	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctggactaggcccacggcAgcctgcccaccccataggga	13	16	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72511833	T	T	72511833	1	4	124	0	1	0	0	0	0	0	0	0	259	203	7	5		5	ADAMTS14	10	72511833	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	857549	72511833	63022914	253	114128											
ANKRD22	118932	broad.mit.edu	37	chr10	90582652	90582652	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctaaaatgaagatagaatCcagtcgttaactttttctgt	7	6	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90582652	A	A	90582652	1	1	124	0	1	0	0	0	0	0	0	0	651	870	30	3		3	ANKRD22	10	90582652	3'UTR	SNP	C	TCGA-44-6147-01A-11D-1753-08	18070819	90582652	44952095	254	114129											
CH25H	9023	broad.mit.edu	37	chr10	90966547	90966547	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatatactgcgttgccagcGcgaacgaggacgagttctgg	13	10	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90966547	A	A	90966547	3	1	124	1	0	0	0	0	1	0	0	0	3337	1087	38	4	319	4	CH25H	10	90966547	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	383895	90966547	44568200	255	114130											
PLCE1	51196	broad.mit.edu	37	chr10	95995657	95995657	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttgcaatagcaaattctcGatttttttttgtagtttgta	7	4	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95995657	A	A	95995657	1	1	124	0	1	0	0	0	0	0	0	0	12129	1073	37	4		4	PLCE1	10	95995657	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	5029110	95995657	39539090	256	114131											
PLCE1	51196	broad.mit.edu	37	chr10	96025355	96025355	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtggtttctttcccccTcttagtttccttaacctaaa	6	11	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96025355	A	A	96025355	1	1	124	0	1	0	0	0	0	0	0	0	12129	1566	54	5		5	PLCE1	10	96025355	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	29698	96025355	39509392	257	114132											
ENTPD7	57089	broad.mit.edu	37	chr10	101458381	101458381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatgtggtggagaggaaCagccaagtcttacatgtccg	13	8	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101458381	A	A	101458381	3	1	124	1	0	0	0	0	1	0	0	0	5186	477	17	3	1135	3	ENTPD7	10	101458381	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	5433026	101458381	34076366	258	114133											
ABCC2	1244	broad.mit.edu	37	chr10	101567314	101567314	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgggctgcgtattcaCctggacctgcatcagcttcc	10	14	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101567314	T	T	101567314	1	4	124	0	1	0	0	0	0	0	0	0	53	522	18	4		4	ABCC2	10	101567314	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	108933	101567314	33967433	259	114134											
SORCS3	22986	broad.mit.edu	37	chr10	106907469	106907469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacctctacatctcagacaCgcgtgggatttacttcactc	6	14	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106907469	A	A	106907469	3	1	124	1	0	0	0	0	1	0	0	0	15046	536	19	3	1431	3	SORCS3	10	106907469	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	5340155	106907469	28627278	260	114135											
ATRNL1	26033	broad.mit.edu	37	chr10	116889227	116889227	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttactgtaaagccaattgCggcagtccagatcacggtta	9	11	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116889227	T	T	116889227	2	4	124	1	0	0	0	0	0	0	0	1	1211	776	27	4		4	ATRNL1	10	116889227	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	9981758	116889227	18645520	261	114136											
MUC6	4588	broad.mit.edu	37	chr11	1027368	1027368	+	Frame_Shift_Del	DEL	G	-	-													gcgcacacactcgcccttttGgttcaggtaggtgccatcgg							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1027368	-	-	1027368	7	5	124	1	0	1	0	1	0	0	0	0	10074	1357	47	0	5256	0	MUC6	11	1027368	Frame_Shift_Del	DEL	G	TCGA-44-6147-01A-11D-1753-08		1027368	133979148	262	114137											
LSP1	4046	broad.mit.edu	37	chr11	1905191	1905191	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagcagcccaggacaccCagccccttggtcttggaggg	13	14	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1905191	A	A	1905191	2	1	124	1	0	0	0	0	0	0	0	1	9150	581	21	2		2	LSP1	11	1905191	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	877823	1905191	133101325	263	114138											
TNNT3	7140	broad.mit.edu	37	chr11	1955213	1955213	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggattcgtgcagagaaggAgagggagcgccagaacagac	17	7	0	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1955213	T	T	1955213	3	4	124	1	0	0	0	0	1	0	0	0	16455	304	11	5	420	5	TNNT3	11	1955213	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	50022	1955213	133051303	264	114139											
TRIM22	10346	broad.mit.edu	37	chr11	5730336	5730336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaatgttgctatttctgtgGatcagagacaagtgaaaact	10	6	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5730336	T	T	5730336	3	4	124	1	0	0	0	0	1	0	0	0	16620	1174	41	3	981	3	TRIM22	11	5730336	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	3775123	5730336	129276180	265	114140											
CNGA4	1262	broad.mit.edu	37	chr11	6260721	6260721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctcgtgtgcaggtatgGcagcggtgctaagggagggg	18	8	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6260721	T	T	6260721	1	4	124	0	1	0	0	0	0	0	0	0	3631	1218	42	3		3	CNGA4	11	6260721	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	530385	6260721	128745795	266	114141											
AMPD3	272	broad.mit.edu	37	chr11	10524122	10524122	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggtctgagtgtcctggcttCgaggaactcgggttgaggac	17	8	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10524122	T	T	10524122	1	4	124	0	1	0	0	0	0	0	0	0	587	899	31	4		4	AMPD3	11	10524122	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	4263401	10524122	124482394	267	114142											
PARVA	55742	broad.mit.edu	37	chr11	12539189	12539190	+	Missense_Mutation	DNP	GG	TT	TT													gtgtacctggtgctgctcatGgggctcctggagggctactt							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	12539190	TT	TT	12539189	3	4	124	1	0	0	0	0	1	0	0	0	11562	1348	47	2	942	2	PARVA	11	12539189	Missense_Mutation	DNP	GG	TCGA-44-6147-01A-11D-1753-08	2015067	12539189	122467327	268	114143											
SLC17A6	57084	broad.mit.edu	37	chr11	22397550	22397550	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcatggaagccacactGctcctggtcgttggctattc	11	11	0	0	rs143233199	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22397550	T	T	22397550	2	4	124	1	0	0	0	0	0	0	0	1	14534	1306	46	3		3	SLC17A6	11	22397550	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	9858361	22397550	112608966	269	114144											
LUZP2	338645	broad.mit.edu	37	chr11	25098931	25098931	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccaagtaatgccactgcAgaaaccgagcctatcccaca	6	17	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25098931	C	C	25098931	2	2	124	1	0	0	0	0	0	0	0	1	9174	175	7	5		5	LUZP2	11	25098931	Silent	SNP	A	TCGA-44-6147-01A-11D-1753-08	2701381	25098931	109907585	270	114145											
ANO3	63982	broad.mit.edu	37	chr11	26621016	26621016	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccttcaattcttggggacAgtagatttgatctacggttt	9	7	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26621016	T	T	26621016	1	4	124	0	1	0	0	0	0	0	0	0	698	203	7	5		5	ANO3	11	26621016	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	1522085	26621016	108385500	271	114146											
CCDC73	493860	broad.mit.edu	37	chr11	32636029	32636029	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccttctctagagcatgtTctcgagtccctggaagcaat	8	11	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32636029	C	C	32636029	3	2	124	1	0	0	0	0	1	0	0	0	2874	1783	62	5	1416	5	CCDC73	11	32636029	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	6015013	32636029	102370487	272	114147											
TRIM48	79097	broad.mit.edu	37	chr11	55035063	55035063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagatttttaagaggaatGtaagcggagctgatgaaaat	14	2	0	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55035063	T	T	55035063	1	4	124	0	1	0	0	0	0	0	0	0	16648	1392	48	3		3	TRIM48	11	55035063	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	22399034	55035063	79971453	273	114148											
OR5T2	219464	broad.mit.edu	37	chr11	56000426	56000426	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcagtcctaaatttcccAtgagagtgaagaggtagatt	9	6	1	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56000426	C	C	56000426	3	2	124	1	0	0	0	0	1	0	0	0	11276	217	8	5	842	5	OR5T2	11	56000426	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	965363	56000426	79006090	274	114149											
FADS2	9415	broad.mit.edu	37	chr11	61625047	61625048	+	Intron	INS	-	G	G													gcatggggaggagggtgactINSgggacagggggacccggggg							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61625048	G	G	61625047	6	5	124	0	1	1	1	0	0	0	0	0	5412	1595	55	0		0	FADS2	11	61625047	Intron	INS	-	TCGA-44-6147-01A-11D-1753-08	5624621	61625047	73381469	275	114150											
SIPA1	6494	broad.mit.edu	37	chr11	65417590	65417599	+	Intron	DEL	GATCCCTTTG	-	-													cctttctgacctgcccacctGatccctttgtccccacagga							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65417599	-	-	65417590	6	5	124	0	1	1	0	1	0	0	0	0	14441	1305	45	0		0	SIPA1	11	65417590	Intron	DEL	GATCCCTTTG	TCGA-44-6147-01A-11D-1753-08	3792543	65417590	69588926	276	114151											
TBX10	347853	broad.mit.edu	37	chr11	67402447	67402447	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccctggcccctgcctcacCccgcccccgctgctcacacc	6	25	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67402447	T	T	67402447	1	4	124	0	1	0	0	0	0	0	0	0	15773	638	22	4		4	TBX10	11	67402447	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1984857	67402447	67604069	277	114152											
CPT1A	1374	broad.mit.edu	37	chr11	68530172	68530172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcacggtctccgtcctccCctctcggaagagccgggtca	12	17	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68530172	A	A	68530172	3	1	124	1	0	0	0	0	1	0	0	0	3863	623	22	2	583	2	CPT1A	11	68530172	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1127725	68530172	66476344	278	114153											
FGF4	2249	broad.mit.edu	37	chr11	69588893	69588893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgggcgagagctccagcaGgcctgggggcggggcgcagg	21	12	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69588893	T	T	69588893	3	4	124	1	0	0	0	0	1	0	0	0	5911	991	35	2	285	2	FGF4	11	69588893	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	1058721	69588893	65417623	279	114154											
CHRDL2	25884	broad.mit.edu	37	chr11	74441858	74441858	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccggtctacttacgggctcGagcgtgggagtccaggggga	17	11	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74441858	T	T	74441858	2	4	124	1	0	0	0	0	0	0	0	1	3405	1066	37	3		3	CHRDL2	11	74441858	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	4852965	74441858	60564658	280	114155											
MOGAT2	80168	broad.mit.edu	37	chr11	75431194	75431194	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggactatatggaagtacatGaaggactatttccccatctc	8	9	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75431194	T	T	75431194	3	4	124	1	0	0	0	0	1	0	0	0	9789	1290	45	3	255	3	MOGAT2	11	75431194	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	989336	75431194	59575322	281	114156											
TMEM135	65084	broad.mit.edu	37	chr11	87013423	87013423	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaacaaaagagagagcaaCatgaggaaaaacccggaaga	12	6	0	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87013423	T	T	87013423	3	4	124	1	0	0	0	0	1	0	0	0	16174	478	17	4	667	4	TMEM135	11	87013423	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	11582229	87013423	47993093	282	114157											
CNTN5	53942	broad.mit.edu	37	chr11	100170106	100170106	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccttttagtcaaattgtGgtcatctgttcagctgaagg	12	7	4	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100170106	A	A	100170106	2	1	124	1	0	0	0	0	0	0	0	1	3676	1335	47	4		4	CNTN5	11	100170106	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	13156683	100170106	34836410	283	114158											
MMP3	4314	broad.mit.edu	37	chr11	102709383	102709383	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagggaaacctagggtgtgGatgcctcttgggtatccagc	16	8	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102709383	A	A	102709383	2	1	124	1	0	0	0	0	0	0	0	1	9760	1164	41	4		4	MMP3	11	102709383	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	2539277	102709383	32297133	284	114159											
C11orf88	399949	broad.mit.edu	37	chr11	111385678	111385678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaatctcagctggtgctgCgcagagacagcagtcagcgt	14	11	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111385678	A	A	111385678	3	1	124	1	0	0	0	0	1	0	0	0	1682	768	27	3	171	3	C11orf88	11	111385678	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	8676295	111385678	23620838	285	114160											
OR8D4	338662	broad.mit.edu	37	chr11	123777122	123777122	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttctctctcatctccacAgatttctcagagaagaatgg	6	10	4	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123777122	T	T	123777122	1	4	124	0	1	0	0	0	0	0	0	0	11327	203	7	5		5	OR8D4	11	123777122	5'Flank	SNP	A	TCGA-44-6147-01A-11D-1753-08	12391444	123777122	11229394	286	114161											
RERGL	79785	broad.mit.edu	37	chr12	18234433	18234433	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagagatacacaatttttaGcaagattgttttaacaactc	5	6	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18234433	A	A	18234433	1	1	124	0	1	0	0	0	0	0	0	0	13341	986	34	4		4	RERGL	12	18234433	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08		18234433	115617462	287	114162											
ETNK1	55500	broad.mit.edu	37	chr12	22824373	22824373	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaagtagataaaccgtgAgcagggggaacattttccca	10	7	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22824373	T	T	22824373	1	4	124	0	1	0	0	0	0	0	0	0	5315	319	11	5		5	ETNK1	12	22824373	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	4589940	22824373	111027522	288	114163											
OVCH1	341350	broad.mit.edu	37	chr12	29648170	29648170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaacttgtacataattaGcagttttcctccactgcatt	5	9	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29648170	T	T	29648170	1	4	124	0	1	0	0	0	0	0	0	0	11417	986	34	3		3	OVCH1	12	29648170	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	6823797	29648170	104203725	289	114164											
ALG10	84920	broad.mit.edu	37	chr12	34179553	34179553	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaatatttgttagttccAgcctatatatttgctggttg	8	5	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34179553	T	T	34179553	2	4	124	1	0	0	0	0	0	0	0	1	511	175	7	5		5	ALG10	12	34179553	Silent	SNP	A	TCGA-44-6147-01A-11D-1753-08	4531383	34179553	99672342	290	114165											
CNTN1	1272	broad.mit.edu	37	chr12	41323804	41323804	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcattccaatacctgaaCgtaagtattttatttgttac	4	9	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41323804	A	A	41323804	2	1	124	1	0	0	0	0	0	0	0	1	3672	550	19	3		3	CNTN1	12	41323804	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	7144251	41323804	92528091	291	114166											
CNTN1	1272	broad.mit.edu	37	chr12	41374627	41374627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgttctttagattaatGgttagaagacatttttatat	6	3	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41374627	T	T	41374627	1	4	124	0	1	0	0	0	0	0	0	0	3672	1363	47	2		2	CNTN1	12	41374627	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	50823	41374627	92477268	292	114167											
PPHLN1	51535	broad.mit.edu	37	chr12	42840506	42840506	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacagaaaaggggtgatGtaggagatggtcaggttggt	16	2	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42840506	A	A	42840506	1	1	124	0	1	0	0	0	0	0	0	0	12411	1392	48	4		4	PPHLN1	12	42840506	3'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08	1465879	42840506	91011389	293	114168											
PUS7L	83448	broad.mit.edu	37	chr12	44142454	44142454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcacaaaaaaagcagctaCcatacatcaattacattctt	3	10	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44142454	A	A	44142454	1	1	124	0	1	0	0	0	0	0	0	0	12942	522	18	3		3	PUS7L	12	44142454	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1301948	44142454	89709441	294	114169											
NELL2	4753	broad.mit.edu	37	chr12	45059372	45059372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacgacagtaatggcgccCttcagcacactcatcgatgt	8	13	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45059372	A	A	45059372	3	1	124	1	0	0	0	0	1	0	0	0	10429	681	24	2	1143	2	NELL2	12	45059372	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	916918	45059372	88792523	295	114170											
KRT82	3888	broad.mit.edu	37	chr12	52797658	52797658	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcatgaagttccacttggtCtccagcagcttgttcttctg	9	11	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52797658	T	T	52797658	2	4	124	1	0	0	0	0	0	0	0	1	8567	912	32	4		4	KRT82	12	52797658	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	7738286	52797658	81054237	296	114171											
KRT72	140807	broad.mit.edu	37	chr12	52980700	52980700	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacttctggtaaggtgaccaAgggcagaactgagatctgca	13	8	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52980700	G	G	52980700	1	3	124	0	1	0	0	0	0	0	0	0	8556	87	3	5		5	KRT72	12	52980700	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	183042	52980700	80871195	297	114172											
KRT76	51350	broad.mit.edu	37	chr12	53169138	53169138	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacctccctgctaattccCcagaaggggaaacttcccag	7	16	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53169138	T	T	53169138	1	4	124	0	1	0	0	0	0	0	0	0	8560	638	22	4		4	KRT76	12	53169138	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	188438	53169138	80682757	298	114173											
ESPL1	9700	broad.mit.edu	37	chr12	53663492	53663492	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcctcttggagctcaccTtggaacactgccgtcgcttt	9	14	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53663492	C	C	53663492	2	2	124	1	0	0	0	0	0	0	0	1	5295	1606	56	5		5	ESPL1	12	53663492	Silent	SNP	T	TCGA-44-6147-01A-11D-1753-08	494354	53663492	80188403	299	114174											
ITGA5	3678	broad.mit.edu	37	chr12	54799729	54799729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgggagatgaagagataGgcccattggtcctggactcc	13	10	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54799729	T	T	54799729	1	4	124	0	1	0	0	0	0	0	0	0	7949	1015	35	2		2	ITGA5	12	54799729	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	1136237	54799729	79052166	300	114175											
PDE1B	5153	broad.mit.edu	37	chr12	54967437	54967437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgttggccacagacatGtcctgccatttccagcaagt	10	11	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54967437	T	T	54967437	3	4	124	1	0	0	0	0	1	0	0	0	11728	1377	48	3	1099	3	PDE1B	12	54967437	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	167708	54967437	78884458	301	114176											
NEUROD4	58158	broad.mit.edu	37	chr12	55421051	55421051	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgacctagaaaaatcCtacagcttcatgccacatta	4	13	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55421051	G	G	55421051	2	3	124	1	0	0	0	0	0	0	0	1	10445	668	24	4		4	NEUROD4	12	55421051	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	453614	55421051	78430844	302	114177											
OR6C2	341416	broad.mit.edu	37	chr12	55846592	55846592	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatagaacagatggttataCttatggctgtatttgcactc	8	6	0	2	rs141026850		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55846592	T	T	55846592	3	4	124	1	0	0	0	0	1	0	0	0	11285	565	20	4	597	4	OR6C2	12	55846592	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	425541	55846592	78005303	303	114178											
BEST3	144453	broad.mit.edu	37	chr12	70048953	70048953	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagaaaggtatcaccagggtCttcttcacagttgaatatat	8	7	4	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70048953	G	G	70048953	3	3	124	1	0	0	0	0	1	0	0	0	1411	913	32	4	269	4	BEST3	12	70048953	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	14202361	70048953	63802942	304	114179											
CDK17	5128	broad.mit.edu	37	chr12	96688884	96688884	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatgccaaaccacgtagaAtttggtacagaaacagctac	7	9	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96688884	G	G	96688884	3	3	124	1	0	0	0	0	1	0	0	0	3163	101	4	5	751	5	CDK17	12	96688884	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	26639931	96688884	37163011	305	114180											
TDG	6996	broad.mit.edu	37	chr12	104373742	104373742	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagaaaaaattacagaCacatttaaagtaaaaagaaa	4	4	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104373742	T	T	104373742	2	4	124	1	0	0	0	0	0	0	0	1	15847	477	17	4		4	TDG	12	104373742	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	7684858	104373742	29478153	306	114181											
TRAFD1	10906	broad.mit.edu	37	chr12	112579051	112579051	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagttgtgcttgggattaggGaactagaatggtatcaaaat	13	3	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112579051	T	T	112579051	1	4	124	0	1	0	0	0	0	0	0	0	16571	1189	41	3		3	TRAFD1	12	112579051	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	8205309	112579051	21272844	307	114182											
GCN1L1	10985	broad.mit.edu	37	chr12	120593036	120593036	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcatcagggctgcacagGtcactcacgtagagcttttc	10	12	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120593036	A	A	120593036	1	1	124	0	1	0	0	0	0	0	0	0	6361	1276	44	4		4	GCN1L1	12	120593036	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	8013985	120593036	13258859	308	114183											
CLIP1	6249	broad.mit.edu	37	chr12	122818554	122818554	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactgtatttaatgtttagtCaccagagatgtcttcttacc	6	8	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122818554	A	A	122818554	1	1	124	0	1	0	0	0	0	0	0	0	3564	841	29	3		3	CLIP1	12	122818554	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	2225518	122818554	11033341	309	114184											
RIMBP2	23504	broad.mit.edu	37	chr12	130926814	130926814	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagttctgctccccagcgtGaggttcatgcgtgtctcctt	10	12	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130926814	A	A	130926814	2	1	124	1	0	0	0	0	0	0	0	1	13472	1277	45	4		4	RIMBP2	12	130926814	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	8108260	130926814	2925081	310	114185											
FLT1	2321	broad.mit.edu	37	chr13	29012365	29012365	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaaatttaccttttttAaagtaacagtgatgttaggt	7	4	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29012365	G	G	29012365	3	3	124	1	0	0	0	0	1	0	0	0	5999	372	13	5	3881	5	FLT1	13	29012365	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08		29012365	86157513	311	114186											
DCLK1	9201	broad.mit.edu	37	chr13	36382450	36382450	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaagcacctcctggtcatCaccacttctgtttaggtgaa	7	11	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36382450	A	A	36382450	3	1	124	1	0	0	0	0	1	0	0	0	4324	826	29	3	435	3	DCLK1	13	36382450	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	7370085	36382450	78787428	312	114187											
FARP1	10160	broad.mit.edu	37	chr13	99042200	99042200	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaccaccgttgtatttTccctttttagagtgcgtacc	6	10	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99042200	G	G	99042200	1	3	124	0	1	0	0	0	0	0	0	0	5733	1798	62	5		5	FARP1	13	99042200	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	62659750	99042200	16127678	313	114188											
DOCK9	23348	broad.mit.edu	37	chr13	99476785	99476786	+	Intron	INS	-	A	A													gagaggaaggagggacagtcINSagagttaggaacctgaacgt							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99476786	A	A	99476785	6	5	124	0	1	1	1	0	0	0	0	0	4734	841	29	0		0	DOCK9	13	99476785	Intron	INS	-	TCGA-44-6147-01A-11D-1753-08	434585	99476785	15693093	314	114189											
TM9SF2	9375	broad.mit.edu	37	chr13	100206731	100206731	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taagctaaggataaagtcctCtcattctcattaccattata	4	9	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100206731	T	T	100206731	1	4	124	0	1	0	0	0	0	0	0	0	16101	928	32	4		4	TM9SF2	13	100206731	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	729946	100206731	14963147	315	114190											
OR4M1	441670	broad.mit.edu	37	chr14	20248934	20248934	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctctctcctggatgggGggcttcattcattctataat	11	9	4	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20248934	T	T	20248934	2	4	124	1	0	0	0	0	0	0	0	1	11169	1219	43	2		2	OR4M1	14	20248934	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08		20248934	87100606	316	114191											
CTSG	1511	broad.mit.edu	37	chr14	25044575	25044575	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgaagatacgccatgtaGgggcgggagtggggcctgct	17	8	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25044575	T	T	25044575	2	4	124	1	0	0	0	0	0	0	0	1	4069	987	35	2		2	CTSG	14	25044575	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	4795641	25044575	82304965	317	114192											
FSCB	84075	broad.mit.edu	37	chr14	44973895	44973896	+	Missense_Mutation	DNP	CC	AA	AA													ttttactgctggaattcctgCcacctgcggtgactgaaatt							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44973896	AA	AA	44973895	3	1	124	1	0	0	0	0	1	0	0	0	6126	739	26	3	185	3	FSCB	14	44973895	Missense_Mutation	DNP	CC	TCGA-44-6147-01A-11D-1753-08	19929320	44973895	62375645	318	114193											
FLVCR2	55640	broad.mit.edu	37	chr14	76045408	76045408	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcgtctcggtccatccCagcgtctcggtccatcccag	9	19	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76045408	A	A	76045408	2	1	124	1	0	0	0	0	0	0	0	1	6004	581	21	2		2	FLVCR2	14	76045408	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	31071513	76045408	31304132	319	114194											
LGMN	5641	broad.mit.edu	37	chr14	93182689	93182689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatggcttaacagcaaaCacttttggtcgggtgccgtg	12	10	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93182689	A	A	93182689	1	1	124	0	1	0	0	0	0	0	0	0	8827	493	17	3		3	LGMN	14	93182689	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	17137281	93182689	14166851	320	114195											
KIAA1409	57578	broad.mit.edu	37	chr14	94171024	94171024	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatcaaggtaagtcactcCctgggctgattggaagctcg	11	9	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94171024	T	T	94171024	1	4	124	0	1	0	0	0	0	0	0	0	8300	638	22	4		4	KIAA1409	14	94171024	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	988335	94171024	13178516	321	114196											
RYR3	6263	broad.mit.edu	37	chr15	34094349	34094349	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcaaataagcatggtcatCacattttatgaataaatagc	5	7	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34094349	T	T	34094349	1	4	124	0	1	0	0	0	0	0	0	0	13881	841	29	4		4	RYR3	15	34094349	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08		34094349	68437043	322	114197											
DISP2	85455	broad.mit.edu	37	chr15	40660665	40660665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgcctgtggacactggCgaccctctggaccctcgtag	12	15	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40660665	A	A	40660665	2	1	124	1	0	0	0	0	0	0	0	1	4580	755	27	3		3	DISP2	15	40660665	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	6566316	40660665	61870727	323	114198											
CLPX	10845	broad.mit.edu	37	chr15	65472656	65472656	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctatcattttcacagtaGtataaactgagagaaaaaaa	6	5	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65472656	T	T	65472656	1	4	124	0	1	0	0	0	0	0	0	0	3588	1044	36	3		3	CLPX	15	65472656	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	24811991	65472656	37058736	324	114199											
CORO2B	10391	broad.mit.edu	37	chr15	68937730	68937730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaccttcactccagctgcAgctccagggcagagaggagc	11	15	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68937730	T	T	68937730	1	4	124	0	1	0	0	0	0	0	0	0	3789	203	7	5		5	CORO2B	15	68937730	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	3465074	68937730	33593662	325	114200											
ETFA	2108	broad.mit.edu	37	chr15	76523762	76523762	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaaagaggtcacattAttaatatgtatttatattat	5	2	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76523762	G	G	76523762	1	3	124	0	1	0	0	0	0	0	0	0	5311	464	16	5		5	ETFA	15	76523762	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	7586032	76523762	26007630	326	114201											
ADAMTS7	11173	broad.mit.edu	37	chr15	79059040	79059041	+	Missense_Mutation	DNP	AT	GC	GC													taggacagatcctcgtggaaAttgatgaaattgtagtcgta					rs144043775	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	79059041	GC	GC	79059040	3	3	124	1	0	0	0	0	1	0	0	0	271	98	4	5	1871	5	ADAMTS7	15	79059040	Missense_Mutation	DNP	AT	TCGA-44-6147-01A-11D-1753-08	2535278	79059040	23472352	327	114202											
IQGAP1	8826	broad.mit.edu	37	chr15	90984897	90984897	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctaagcaggacaaaaTgacaaatgctaaaaacaggg	10	8	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90984897	C	C	90984897	3	2	124	1	0	0	0	0	1	0	0	0	7884	1464	51	5	839	5	IQGAP1	15	90984897	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	11925857	90984897	11546495	328	114203											
PCSK6	5046	broad.mit.edu	37	chr15	101906498	101906498	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcagtggacagtcatgaaTtcccagtttgtaaacccttc	8	11	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101906498	A	A	101906498	3	1	124	1	0	0	0	0	1	0	0	0	11698	1490	52	5	1617	5	PCSK6	15	101906498	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	10921601	101906498	624894	329	114204											
A2BP1	54715	broad.mit.edu	37	chr16	7703884	7703884	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcgcacctgcgaggccgCggtcgcaccgtgtacaacac	15	15	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7703884	T	T	7703884	2	4	124	1	0	0	0	0	0	0	0	1	3	755	27	4		4	A2BP1	16	7703884	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08		7703884	82650869	330	114205											
NPIP	9284	broad.mit.edu	37	chr16	15026684	15026684	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccctcccgcgcctctgcaGggctcagccctgcccggttc	10	21	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15026684	C	C	15026684	5	2	124	1	0	0	0	0	0	0	1	0	10679	1015	35	4		4	NPIP	16	15026684	Splice_Site	SNP	G	TCGA-44-6147-01A-11D-1753-08	7322800	15026684	75328069	331	114206											
ACSM2B	348158	broad.mit.edu	37	chr16	20548643	20548643	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaagtttggttcgttgaatTttccctgtgacagtcttggg	12	7	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20548643	G	G	20548643	3	3	124	1	0	0	0	0	1	0	0	0	184	1838	64	5	66	5	ACSM2B	16	20548643	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	5521959	20548643	69806110	332	114207											
CDIPT	10423	broad.mit.edu	37	chr16	29874031	29874031	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaatgatggcgaagacaatCcgggcataaccttggaacgg	13	8	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29874031	T	T	29874031	2	4	124	1	0	0	0	0	0	0	0	1	3153	842	30	4		4	CDIPT	16	29874031	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	9325388	29874031	60480722	333	114208											
ITGAD	3681	broad.mit.edu	37	chr16	31424351	31424351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaccggtgctgcctcccCagccacgttatcctcccaga	7	18	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31424351	A	A	31424351	1	1	124	0	1	0	0	0	0	0	0	0	7954	609	21	2		2	ITGAD	16	31424351	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	1550320	31424351	58930402	334	114209											
ZNF720	124411	broad.mit.edu	37	chr16	31734594	31734594	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaggtctcgctgtctctaAgccggacctgatcacctttt	8	13	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31734594	T	T	31734594	3	4	124	1	0	0	0	0	1	0	0	0	18249	72	3	5	156	5	ZNF720	16	31734594	Missense_Mutation	SNP	A	TCGA-44-6147-01A-11D-1753-08	310243	31734594	58620159	335	114210											
KCTD19	146212	broad.mit.edu	37	chr16	67328886	67328886	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttttcttacttgtatgcttCacattgtgcaagggcttctg	9	8	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67328886	T	T	67328886	3	4	124	1	0	0	0	0	1	0	0	0	8176	835	29	4	1343	4	KCTD19	16	67328886	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	35594292	67328886	23025867	336	114211											
NQO1	1728	broad.mit.edu	37	chr16	69752194	69752194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggctggggccagaggggCcaaagctgggccagaggacc	19	10	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69752194	A	A	69752194	1	1	124	0	1	0	0	0	0	0	0	0	10706	754	26	3		3	NQO1	16	69752194	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	2423308	69752194	20602559	337	114212											
PSMD7	5713	broad.mit.edu	37	chr16	74339302	74339302	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctacctggaaaaagtcGccacaggcaagctgcccatc	11	13	0	0	rs115842956	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74339302	A	A	74339302	3	1	124	1	0	0	0	0	1	0	0	0	12809	1087	38	4	672	4	PSMD7	16	74339302	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	4587108	74339302	16015451	338	114213											
GLG1	2734	broad.mit.edu	37	chr16	74508689	74508689	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacaaaagctttgtttaattCcccagactgagattgttgaa	7	8	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74508689	A	A	74508689	1	1	124	0	1	0	0	0	0	0	0	0	6500	870	30	3		3	GLG1	16	74508689	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	169387	74508689	15846064	339	114214											
FOXL1	2300	broad.mit.edu	37	chr16	86613358	86613358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcccgacacggtactccaCttccagtaaagcaaacaatg	7	13	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86613358	A	A	86613358	3	1	124	1	0	0	0	0	1	0	0	0	6076	564	20	3	1031	3	FOXL1	16	86613358	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	12104669	86613358	3741395	340	114215											
SPG7	6687	broad.mit.edu	37	chr16	89621029	89621029	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtgtccacacagcacccAcggtccccacccctctcgtg	7	20	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89621029	G	G	89621029	1	3	124	0	1	0	0	0	0	0	0	0	15162	174	6	5		5	SPG7	16	89621029	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	3007671	89621029	733724	341	114216											
ZZEF1	23140	broad.mit.edu	37	chr17	3984731	3984731	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacttcactgatgttcatcTtggccaggtcgttcttctca	9	11	5	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3984731	C	C	3984731	3	2	124	1	0	0	0	0	1	0	0	0	18384	1609	56	5	6269	5	ZZEF1	17	3984731	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08		3984731	77210479	342	114217											
WSCD1	23302	broad.mit.edu	37	chr17	6021387	6021387	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagtggcaggagggagatTgagatgtttgattcagccat	16	4	1	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6021387	A	A	6021387	2	1	124	1	0	0	0	0	0	0	0	1	17533	1800	63	5		5	WSCD1	17	6021387	Silent	SNP	T	TCGA-44-6147-01A-11D-1753-08	2036656	6021387	75173823	343	114218											
TP53	7157	broad.mit.edu	37	chr17	7579358	7579358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatgcaagaagcccagaCggaaaccgtagctgccctgg	12	12	0	3	rs11540654		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579358	A	A	7579358	3	1	124	1	0	0	0	0	1	0	0	0	16505	536	19	3	973	3	TP53	17	7579358	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1557971	7579358	73615852	344	114219											
MYH3	4621	broad.mit.edu	37	chr17	10535949	10535949	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcacctcggcgtccagggcGctctgcatggtttccactgt	12	15	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10535949	A	A	10535949	2	1	124	1	0	0	0	0	0	0	0	1	10130	1078	38	4		4	MYH3	17	10535949	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	2956591	10535949	70659261	345	114220											
NF1	4763	broad.mit.edu	37	chr17	29683811	29683811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatacagcattgtaaataGgtagccaaaacttttgtgta	7	5	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29683811	T	T	29683811	1	4	124	0	1	0	0	0	0	0	0	0	10451	1015	35	2		2	NF1	17	29683811	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	19147862	29683811	51511399	346	114221											
GGNBP2	79893	broad.mit.edu	37	chr17	34942353	34942353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggttctcgggagggttcgGatgttgcctgcactgaaggc	16	9	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34942353	T	T	34942353	3	4	124	1	0	0	0	0	1	0	0	0	6423	1174	41	3	1488	3	GGNBP2	17	34942353	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	5258542	34942353	46252857	347	114222											
KRT26	353288	broad.mit.edu	37	chr17	38922971	38922971	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaacaggttgaaaagTagccataataggtatgcttt	8	4	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38922971	C	C	38922971	1	2	124	0	1	0	0	0	0	0	0	0	8534	1653	57	5		5	KRT26	17	38922971	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	3980618	38922971	42272239	348	114223											
KRT27	342574	broad.mit.edu	37	chr17	38937432	38937432	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcccatttatcttcagctCtacttactttagtctgaagt	4	10	4	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38937432	G	G	38937432	1	3	124	0	1	0	0	0	0	0	0	0	8535	928	32	4		4	KRT27	17	38937432	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	14461	38937432	42257778	349	114224											
ADAM11	4185	broad.mit.edu	37	chr17	42850753	42850753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggctcatggtctaccgacGggagggtctgcctgagccca	14	14	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42850753	A	A	42850753	3	1	124	1	0	0	0	0	1	0	0	0	235	1116	39	4	992	4	ADAM11	17	42850753	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	3913321	42850753	38344457	350	114225											
MYCBPAP	84073	broad.mit.edu	37	chr17	48603140	48603140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggattgcaggcttgagccaCtgtgcctggcccttgtacta	13	11	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48603140	A	A	48603140	1	1	124	0	1	0	0	0	0	0	0	0	10113	580	20	3		3	MYCBPAP	17	48603140	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	5752387	48603140	32592070	351	114226											
MSI2	124540	broad.mit.edu	37	chr17	55478805	55478805	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacagtagtggaagatgtAaagcaatatttcgagcagtt	10	5	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55478805	C	C	55478805	2	2	124	1	0	0	0	0	0	0	0	1	9970	349	13	5		5	MSI2	17	55478805	Silent	SNP	A	TCGA-44-6147-01A-11D-1753-08	6875665	55478805	25716405	352	114227											
PPM1D	8493	broad.mit.edu	37	chr17	58678193	58678193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagccggctaaggtttgcGctgccatccgcaaaggcttt	12	13	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58678193	T	T	58678193	3	4	124	1	0	0	0	0	1	0	0	0	12438	1087	38	3	420	3	PPM1D	17	58678193	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	3199388	58678193	22517017	353	114228											
ABCA6	23460	broad.mit.edu	37	chr17	67119514	67119514	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacaagatgatgaattcaaGaaaaataaaggagaataatg	8	2	1	5			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67119514	A	A	67119514	2	1	124	1	0	0	0	0	0	0	0	1	36	933	33	4		4	ABCA6	17	67119514	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	8441321	67119514	14075696	354	114229											
KCNJ16	3773	broad.mit.edu	37	chr17	68128482	68128482	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttatcttatattctctcgtGgttgatatttggctctgtct	7	7	4	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68128482	A	A	68128482	4	1	124	1	0	0	0	0	0	1	0	0	8120	1357	47	4	256	4	KCNJ16	17	68128482	Nonsense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	1008968	68128482	13066728	355	114230											
KIF19	124602	broad.mit.edu	37	chr17	72339151	72339151	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggtcaccctccaccttGttctgccccaggctgtggga	10	18	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72339151	A	A	72339151	1	1	124	0	1	0	0	0	0	0	0	0	8352	1392	48	4		4	KIF19	17	72339151	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	4210669	72339151	8856059	356	114231											
GPR142	350383	broad.mit.edu	37	chr17	72368476	72368476	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggcgccccgggtcttcGtcatgctctaccacatgtac	11	14	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72368476	A	A	72368476	3	1	124	1	0	0	0	0	1	0	0	0	6715	1145	40	4	1140	4	GPR142	17	72368476	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	29325	72368476	8826734	357	114232											
C17orf77	146723	broad.mit.edu	37	chr17	72588653	72588653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagccaaggagcaggaggaGccaggaggaacccaagcatt	16	9	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72588653	T	T	72588653	3	4	124	1	0	0	0	0	1	0	0	0	1899	962	34	3	470	3	C17orf77	17	72588653	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	220177	72588653	8606557	358	114233											
ITGB4	3691	broad.mit.edu	37	chr17	73748568	73748568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcgtggacgcccagagcGgggaggactacgacagcttc	14	12	0	1	rs140930313		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73748568	T	T	73748568	3	4	124	1	0	0	0	0	1	0	0	0	7967	1116	39	1	4140	1	ITGB4	17	73748568	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	1159915	73748568	7446642	359	114234											
CYTH1	9267	broad.mit.edu	37	chr17	76698116	76698117	+	Intron	INS	-	A	A													tttaaggcaaaaacccctccINSaagaacttcagagtatttgg							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76698117	A	A	76698116	6	5	124	0	1	1	1	0	0	0	0	0	4236	609	21	0		0	CYTH1	17	76698116	Intron	INS	-	TCGA-44-6147-01A-11D-1753-08	2949548	76698116	4497094	360	114235											
CYTH1	9267	broad.mit.edu	37	chr17	76705803	76705803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacgctcctctgctgtcaGgtcactgggaactacaaaaa	9	11	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76705803	T	T	76705803	3	4	124	1	0	0	0	0	1	0	0	0	4236	991	35	2	1210	2	CYTH1	17	76705803	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	7687	76705803	4489407	361	114236											
CARD14	79092	broad.mit.edu	37	chr17	78176159	78176159	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctgctggcatgcccaccGcgtgaactcttacaccatga	10	15	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78176159	A	A	78176159	3	1	124	1	0	0	0	0	1	0	0	0	2672	1087	38	4	2378	4	CARD14	17	78176159	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	1470356	78176159	3019051	362	114237											
L3MBTL4	91133	broad.mit.edu	37	chr18	6264070	6264070	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacaatgacttttctcaaaAtgattagtgacaggaaaata	6	6	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6264070	G	G	6264070	1	3	124	0	1	0	0	0	0	0	0	0	8666	116	4	5		5	L3MBTL4	18	6264070	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08		6264070	71813178	363	114238											
SS18	6760	broad.mit.edu	37	chr18	23598245	23598245	+	3'UTR	DEL	G	-	-													aatggaaggatctcttcacaGggaggtgtccacagtgctga							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23598245	-	-	23598245	6	5	124	0	1	1	0	1	0	0	0	0	15293	1015	35	0		0	SS18	18	23598245	3'UTR	DEL	G	TCGA-44-6147-01A-11D-1753-08	17334175	23598245	54479003	364	114239											
SLC14A1	6563	broad.mit.edu	37	chr18	43314471	43314471	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcagttttgcaagatgaAatatgttctctgaatgtata	8	4	2	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43314471	T	T	43314471	1	4	124	0	1	0	0	0	0	0	0	0	14509	29	1	5		5	SLC14A1	18	43314471	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	19716226	43314471	34762777	365	114240											
ST8SIA5	29906	broad.mit.edu	37	chr18	44268816	44268816	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatacttgagctttgtcccCaggggagtgttcttctgggt	12	9	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44268816	A	A	44268816	2	1	124	1	0	0	0	0	0	0	0	1	15353	581	21	2		2	ST8SIA5	18	44268816	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	954345	44268816	33808432	366	114241											
SERPINB4	6318	broad.mit.edu	37	chr18	61323314	61323314	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctatacaaatggaaaaaaGaaactgatatgactaactgt	7	5	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61323314	T	T	61323314	1	4	124	0	1	0	0	0	0	0	0	0	14216	957	33	3		3	SERPINB4	18	61323314	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	17054498	61323314	16753934	367	114242											
SERPINB7	8710	broad.mit.edu	37	chr18	61459588	61459588	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaaactgttctcgtaacctCtgattctaatgattgctttc	6	10	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61459588	G	G	61459588	1	3	124	0	1	0	0	0	0	0	0	0	14219	928	32	4		4	SERPINB7	18	61459588	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	136274	61459588	16617660	368	114243											
EFNA2	1943	broad.mit.edu	37	chr19	1299836	1299836	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcagacgagaccctgtaCgaggctcctgagcccatctt	10	16	1	3	rs140490619		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1299836	T	T	1299836	2	4	124	1	0	0	0	0	0	0	0	1	4991	547	19	4		4	EFNA2	19	1299836	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08		1299836	57829147	369	114244											
MATK	4145	broad.mit.edu	37	chr19	3781677	3781677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaccagcccgctgtggAgtgaagacccagtcagaggg	14	11	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3781677	G	G	3781677	1	3	124	0	1	0	0	0	0	0	0	0	9424	319	11	5		5	MATK	19	3781677	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	2481841	3781677	55347306	370	114245											
ZNF557	79230	broad.mit.edu	37	chr19	7075037	7075037	+	5'UTR	DEL	G	-	-													tgagagcgctgcgggataaaGgaggagcgtcctgcttcccg							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7075037	-	-	7075037	6	5	124	0	1	1	0	1	0	0	0	0	18115	1015	35	0		0	ZNF557	19	7075037	5'UTR	DEL	G	TCGA-44-6147-01A-11D-1753-08	3293360	7075037	52053946	371	114246											
OR7G1	125962	broad.mit.edu	37	chr19	9226302	9226302	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagtcagagatgacagccagGagaatgagcaggttccccag	14	9	1	4			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9226302	C	C	9226302	2	2	124	1	0	0	0	0	0	0	0	1	11316	1161	41	4		4	OR7G1	19	9226302	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	2151265	9226302	49902681	372	114247											
CACNA1A	773	broad.mit.edu	37	chr19	13409899	13409899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcggcgcgctgctggcCgaggcgctggtccacggtgg	18	14	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13409899	A	A	13409899	3	1	124	1	0	0	0	0	1	0	0	0	2564	652	23	1	5190	1	CACNA1A	19	13409899	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	4183597	13409899	45719084	373	114248											
ZNF99	7652	broad.mit.edu	37	chr19	22940301	22940301	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattatctcatgttttctaaGggttgaggaattgttaaaag	9	3	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22940301	A	A	22940301	3	1	124	1	0	0	0	0	1	0	0	0	18333	1000	35	4	987	4	ZNF99	19	22940301	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	9530402	22940301	36188682	374	114249											
CCDC123	84902	broad.mit.edu	37	chr19	33370117	33370117	+	Missense_Mutation	SNP	C	A	A													cataggagcagacatcgcagCcgtccagcaggtctgcctga							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33370117	A	A	33370117	3	1	124	1	0	0	0	0	1	0	0	0	2785	739	26	3	52	3	CCDC123	19	33370117	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	10429816	33370117	25758866	375	114250	500	2									
CCDC123	84902	broad.mit.edu	37	chr19	33370119	33370119	+	Silent	SNP	G	A	A													taggagcagacatcgcagccGtccagcaggtctgcctgaga							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33370119	A	A	33370119	2	1	124	1	0	0	0	0	0	0	0	1	2785	1136	40	4		4	CCDC123	19	33370119	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	2	33370119	25758864	376	114251	500	2									
FFAR1	2864	broad.mit.edu	37	chr19	35842897	35842897	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttgggttggaggctccagGaggctggctggaccacagca	16	10	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35842897	A	A	35842897	3	1	124	1	0	0	0	0	1	0	0	0	5884	1174	41	4	445	4	FFAR1	19	35842897	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	2472778	35842897	23286086	377	114252											
DMRTC2	63946	broad.mit.edu	37	chr19	42354309	42354309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaacatggcaaaatcctGcccctctttcaatgtgtgca	6	12	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42354309	T	T	42354309	1	4	124	0	1	0	0	0	0	0	0	0	4631	1334	46	3		3	DMRTC2	19	42354309	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	6511412	42354309	16774674	378	114253											
GRIK5	2901	broad.mit.edu	37	chr19	42563734	42563734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtacccaggcatggcGtagacactctctcctcctca	9	15	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42563734	T	T	42563734	1	4	124	0	1	0	0	0	0	0	0	0	6843	1160	40	3		3	GRIK5	19	42563734	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	209425	42563734	16565249	379	114254											
PSG7	5676	broad.mit.edu	37	chr19	43439665	43439665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgacattctggatcagCagggatgcattggaatatac	13	6	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43439665	A	A	43439665	2	1	124	1	0	0	0	0	0	0	0	1	12766	697	25	3		3	PSG7	19	43439665	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	875931	43439665	15689318	380	114255											
TEX101	83639	broad.mit.edu	37	chr19	43920644	43920644	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcctacagtaactactgtGaggattccttctgtaatgac	7	11	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43920644	C	C	43920644	3	2	124	1	0	0	0	0	1	0	0	0	15895	1291	45	4	396	4	TEX101	19	43920644	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	480979	43920644	15208339	381	114256											
ZNF226	7769	broad.mit.edu	37	chr19	44680542	44680542	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagggccttcagtcaggcctCtcatcttcaggaccatcaga	10	13	6	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44680542	T	T	44680542	3	4	124	1	0	0	0	0	1	0	0	0	17906	913	32	4	1195	4	ZNF226	19	44680542	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	759898	44680542	14448441	382	114257											
QPCTL	54814	broad.mit.edu	37	chr19	46196733	46196733	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgggacaactggatccAcagcgtctctggagcactta	13	10	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46196733	T	T	46196733	2	4	124	1	0	0	0	0	0	0	0	1	12983	146	6	5		5	QPCTL	19	46196733	Silent	SNP	A	TCGA-44-6147-01A-11D-1753-08	1516191	46196733	12932250	383	114258											
DMWD	1762	broad.mit.edu	37	chr19	46289666	46289666	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggacttgtggccatggcctCgagccaccacgcggccctcg	13	16	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46289666	G	G	46289666	3	3	124	1	0	0	0	0	1	0	0	0	4633	884	31	4	948	4	DMWD	19	46289666	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	92933	46289666	12839317	384	114259											
NOVA2	4858	broad.mit.edu	37	chr19	46444210	46444211	+	Intron	DNP	GG	TT	TT													acgatcagcttggcctgcgtGgggagcaaaagggagggtct							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	46444211	TT	TT	46444210	1	4	124	0	1	0	0	0	0	0	0	0	10650	1363	47	2		2	NOVA2	19	46444210	Intron	DNP	GG	TCGA-44-6147-01A-11D-1753-08	154544	46444210	12684773	385	114260											
MEIS3	56917	broad.mit.edu	37	chr19	47920532	47920532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatagggccctggtactgCgggcactgtctctgggaagc	15	12	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47920532	A	A	47920532	3	1	124	1	0	0	0	0	1	0	0	0	9562	768	27	3	1221	3	MEIS3	19	47920532	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1476322	47920532	11208451	386	114261											
SYT3	84258	broad.mit.edu	37	chr19	51133135	51133135	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggcagggaggtccaggGcctgcaggatcctcaccacc	13	15	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51133135	T	T	51133135	3	4	124	1	0	0	0	0	1	0	0	0	15594	1203	42	3	828	3	SYT3	19	51133135	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	3212603	51133135	7995848	387	114262											
LILRA6	79168	broad.mit.edu	37	chr19	54744954	54744954	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcaggctctgcccaggGgccaggacagggccctgcag	17	13	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54744954	T	T	54744954	2	4	124	1	0	0	0	0	0	0	0	1	8861	1219	43	2		2	LILRA6	19	54744954	Silent	SNP	G	TCGA-44-6147-01A-11D-1753-08	3611819	54744954	4384029	388	114263											
PPP1R12C	54776	broad.mit.edu	37	chr19	55603623	55603623	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagctccaccttgagctgCgccagccgcagcgtggtctc	11	17	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55603623	A	A	55603623	2	1	124	1	0	0	0	0	0	0	0	1	12457	755	27	3		3	PPP1R12C	19	55603623	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	858669	55603623	3525360	389	114264											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56703952	56703952	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaggtatttgcaatattAgctgtgctgatatttgagac	11	5	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56703952	T	T	56703952	1	4	124	0	1	0	0	0	0	0	0	0	18368	435	15	5		5	ZSCAN5B	19	56703952	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08	1100329	56703952	2425031	390	114265											
SLC23A2	9962	broad.mit.edu	37	chr20	4840122	4840122	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaatggtgtgggcagaactCcgccaatcaaagcaggaaag	13	9	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4840122	A	A	4840122	1	1	124	0	1	0	0	0	0	0	0	0	14577	870	30	3		3	SLC23A2	20	4840122	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08		4840122	58185398	391	114266											
PROKR2	128674	broad.mit.edu	37	chr20	5283389	5283389	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatggcgagatatctggtgGgggagggaagccaacagtag	18	6	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5283389	A	A	5283389	1	1	124	0	1	0	0	0	0	0	0	0	12659	1247	43	4		4	PROKR2	20	5283389	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	443267	5283389	57742131	392	114267											
CD93	22918	broad.mit.edu	37	chr20	23066732	23066732	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggccgtgtagcaggcggtcCccacgcagaccaccgcctcc	13	18	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23066732	G	G	23066732	3	3	124	1	0	0	0	0	1	0	0	0	3077	623	22	4	1868	4	CD93	20	23066732	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	17783343	23066732	39958788	393	114268											
PHF20	51230	broad.mit.edu	37	chr20	34519298	34519298	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagatcgtggccacccaccaGcttcttggtgatgtgcagag	12	11	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34519298	C	C	34519298	3	2	124	1	0	0	0	0	1	0	0	0	11926	962	34	4	2286	4	PHF20	20	34519298	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	11452566	34519298	28506222	394	114269											
BPI	671	broad.mit.edu	37	chr20	36965506	36965506	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacactcacaaacaaggGgtgcatcttcaactggtgac	8	13	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36965506	A	A	36965506	1	1	124	0	1	0	0	0	0	0	0	0	1499	1247	43	4		4	BPI	20	36965506	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	2446208	36965506	26060014	395	114270			2	92		4	4	124	G		8.156796e-10
BPI	671	broad.mit.edu	37	chr20	36965524	36965524	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggtgcatcttcaactggtGacaacattctcatctctccc	8	13	4	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36965524	A	A	36965524	1	1	124	0	1	0	0	0	0	0	0	0	1499	1305	45	4		4	BPI	20	36965524	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	18	36965524	26059996	396	114271			2	92		4	4	124	G		8.156796e-10
BPI	671	broad.mit.edu	37	chr20	36965569	36965569	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttcctgctgttcggtgcaGacgttgtctataaatgaagg	11	8	1	2	rs5743549	byFrequency	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36965569	A	A	36965569	3	1	124	1	0	0	0	0	1	0	0	0	1499	942	33	4	1505	4	BPI	20	36965569	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	45	36965569	26059951	397	114272			2	92		4	4	124	G		8.156796e-10
BPI	671	broad.mit.edu	37	chr20	36965629	36965629	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtcagccacacctgttcctGatgggctgtggggcaccggc	14	13	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36965629	A	A	36965629	1	1	124	0	1	0	0	0	0	0	0	0	1499	1305	45	4		4	BPI	20	36965629	3'UTR	SNP	G	TCGA-44-6147-01A-11D-1753-08	60	36965629	26059891	398	114273			2	92		4	4	124	G		8.156796e-10
RAE1	8480	broad.mit.edu	37	chr20	55942169	55942169	+	Intron	DEL	A	-	-													acttaatatgtatttactttAaaaaaaaaacaaaataagta							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55942169	-	-	55942169	6	5	124	0	1	1	0	1	0	0	0	0	13106	377	13	0		0	RAE1	20	55942169	Intron	DEL	A	TCGA-44-6147-01A-11D-1753-08	18976540	55942169	7083351	399	114274											
NKAIN4	128414	broad.mit.edu	37	chr20	61873771	61873771	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgagagtggatggatggacGgatggatggcagaacggaca	19	4	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61873771	C	C	61873771	1	2	124	0	1	0	0	0	0	0	0	0	10533	1131	39	4		4	NKAIN4	20	61873771	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	5931602	61873771	1151749	400	114275											
OPRL1	4987	broad.mit.edu	37	chr20	62729693	62729693	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccggtgtttgccatctgCatcttcctcttctccttcat	7	15	5	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62729693	A	A	62729693	4	1	124	1	0	0	0	0	0	1	0	0	10980	718	25	3	664	3	OPRL1	20	62729693	Nonsense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	855922	62729693	295827	401	114276											
SAMSN1	64092	broad.mit.edu	37	chr21	15872985	15872985	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgaatttgaagtttccCactttattgttcaacattcc	4	8	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15872985	A	A	15872985	2	1	124	1	0	0	0	0	0	0	0	1	13941	581	21	2		2	SAMSN1	21	15872985	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08		15872985	32256910	402	114277											
KCNJ6	3763	broad.mit.edu	37	chr21	39087237	39087237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagatatcggtcaggtagcGataggtctccctcacgttgc	12	10	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39087237	T	T	39087237	3	4	124	1	0	0	0	0	1	0	0	0	8125	1058	37	3	1056	3	KCNJ6	21	39087237	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	23214252	39087237	9042658	403	114278											
KRTAP10-3	386682	broad.mit.edu	37	chr21	45978487	45978487	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggcagggggccggggCgcagcagctggtggcgcagc	22	11	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45978487	A	A	45978487	3	1	124	1	0	0	0	0	1	0	0	0	8581	768	27	3	557	3	KRTAP10-3	21	45978487	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	6891250	45978487	2151408	404	114279											
MYO18B	84700	broad.mit.edu	37	chr22	26164868	26164868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggaagaaggagtaagtggGacggtccccagaataagaag	16	5	0	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26164868	T	T	26164868	3	4	124	1	0	0	0	0	1	0	0	0	10160	1174	41	3	995	3	MYO18B	22	26164868	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08		26164868	25139698	405	114280											
CSF2RB	1439	broad.mit.edu	37	chr22	37329941	37329941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctggagccctccaccaGgtactgggccagggtgaggg	16	13	0	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37329941	T	T	37329941	3	4	124	1	0	0	0	0	1	0	0	0	3969	1000	35	2	1254	2	CSF2RB	22	37329941	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	11165073	37329941	13974625	406	114281											
SMC1B	27127	broad.mit.edu	37	chr22	45758883	45758883	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagttgaacattaagccgaGttttttgtttttcaaattct	6	6	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45758883	C	C	45758883	3	2	124	1	0	0	0	0	1	0	0	0	14896	1029	36	4	1303	4	SMC1B	22	45758883	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	8428942	45758883	5545683	407	114282											
CSF2RA	1438	broad.mit.edu	37	chrX	1403675	1403675	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaccgattctcctgcctcAgcctcctgagtagctgggat	9	14	3	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1403675	T	T	1403675	1	4	124	0	1	0	0	0	0	0	0	0	3968	203	7	5		5	CSF2RA	23	1403675	Intron	SNP	A	TCGA-44-6147-01A-11D-1753-08		1403675	153866885	408	114283											
FRMPD4	9758	broad.mit.edu	37	chrX	12735649	12735649	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgcgggcttatagtcctGagtcttcgtcagactcgggc	12	11	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12735649	C	C	12735649	3	2	124	1	0	0	0	0	1	0	0	0	6119	1291	45	4	2766	4	FRMPD4	23	12735649	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	11331974	12735649	142534911	409	114284											
GPR64	10149	broad.mit.edu	37	chrX	19031921	19031921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgggtttggggcatagGggaagagatcgtttcagact	16	5	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19031921	T	T	19031921	3	4	124	1	0	0	0	0	1	0	0	0	6770	1232	43	2	2127	2	GPR64	23	19031921	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	6296272	19031921	136238639	410	114285											
SH3KBP1	30011	broad.mit.edu	37	chrX	19559943	19559943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaacggggagaccaggccCgccctccaaggcaggctggg	15	14	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19559943	A	A	19559943	1	1	124	0	1	0	0	0	0	0	0	0	14368	667	23	1		1	SH3KBP1	23	19559943	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	528022	19559943	135710617	411	114286											
USP9X	8239	broad.mit.edu	37	chrX	41029762	41029762	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagataagttccaatatgCcttcaagccctgatagctct	6	12	2	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41029762	T	T	41029762	3	4	124	1	0	0	0	0	1	0	0	0	17217	739	26	4	2991	4	USP9X	23	41029762	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	21469819	41029762	114240798	412	114287											
ZNF630	57232	broad.mit.edu	37	chrX	47919949	47919949	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagagaaaattgtagtggcTttggccttggcagctcagaa	12	6	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47919949	A	A	47919949	1	1	124	0	1	0	0	0	0	0	0	0	18181	1624	56	5		5	ZNF630	23	47919949	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	6890187	47919949	107350611	413	114288											
DGKK	139189	broad.mit.edu	37	chrX	50122615	50122615	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcctccccattccttgttCcatactaaccgtggttgctg	6	15	0	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50122615	A	A	50122615	1	1	124	0	1	0	0	0	0	0	0	0	4512	870	30	3		3	DGKK	23	50122615	Intron	SNP	C	TCGA-44-6147-01A-11D-1753-08	2202666	50122615	105147945	414	114289											
SSX7	280658	broad.mit.edu	37	chrX	52686387	52686387	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaagctctgctcttaatgCgggcacattccactccatgt	7	12	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52686387	T	T	52686387	1	4	124	0	1	0	0	0	0	0	0	0	15327	783	27	4		4	SSX7	23	52686387	5'Flank	SNP	C	TCGA-44-6147-01A-11D-1753-08	2563772	52686387	102584173	415	114290											
ITIH5L	347365	broad.mit.edu	37	chrX	54783839	54783839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggccttggtctgtcagGtctaggaggtagtggggttt	19	5	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54783839	T	T	54783839	3	4	124	1	0	0	0	0	1	0	0	0	7978	1261	44	3	1297	3	ITIH5L	23	54783839	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	2097452	54783839	100486721	416	114291											
FAM123B	139285	broad.mit.edu	37	chrX	63411898	63411898	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtggtgggatggtagccCaggttcatattgggccgtgg	18	6	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63411898	A	A	63411898	2	1	124	1	0	0	0	0	0	0	0	1	5469	581	21	2		2	FAM123B	23	63411898	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	8628059	63411898	91858662	417	114292											
VSIG4	11326	broad.mit.edu	37	chrX	65252505	65252505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggaggagaaccccgagCctggcattgaaggctaatcc	14	10	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65252505	A	A	65252505	3	1	124	1	0	0	0	0	1	0	0	0	17352	739	26	3	728	3	VSIG4	23	65252505	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	1840607	65252505	90018055	418	114293											
ATRX	546	broad.mit.edu	37	chrX	76777711	76777711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattgcctttaattcatGtcaaactacttttgtacttc	4	8	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76777711	T	T	76777711	1	4	124	0	1	0	0	0	0	0	0	0	1212	1392	48	3		3	ATRX	23	76777711	Intron	SNP	G	TCGA-44-6147-01A-11D-1753-08	11525206	76777711	78492849	419	114294											
ATRX	546	broad.mit.edu	37	chrX	76875878	76875878	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacactcaattaggttatTttgaagtggtgttcctgtta	8	7	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76875878	C	C	76875878	3	2	124	1	0	0	0	0	1	0	0	0	1212	1841	64	5	2285	5	ATRX	23	76875878	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	98167	76875878	78394682	420	114295											
TAF9B	51616	broad.mit.edu	37	chrX	77395088	77395088	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggagcgttcttgggaggCgccatcttgcccgactccat	12	14	2	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77395088	A	A	77395088	2	1	124	1	0	0	0	0	0	0	0	1	15655	755	27	3		3	TAF9B	23	77395088	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	519210	77395088	77875472	421	114296											
POF1B	79983	broad.mit.edu	37	chrX	84600895	84600895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctggcttgatccactatGgcacagttcatttccaatat	6	10	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84600895	T	T	84600895	3	4	124	1	0	0	0	0	1	0	0	0	12277	1348	47	2	1123	2	POF1B	23	84600895	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	7205807	84600895	70669665	422	114297											
PCDH11X	27328	broad.mit.edu	37	chrX	91090841	91090841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttatgaagtggaggttgCcattttgccggatgaaatat	11	5	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91090841	A	A	91090841	3	1	124	1	0	0	0	0	1	0	0	0	11602	739	26	3	340	3	PCDH11X	23	91090841	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	6489946	91090841	64179719	423	114298											
DIAPH2	1730	broad.mit.edu	37	chrX	96197255	96197256	+	Intron	INS	-	T	T													actgaacttctattcatatcINStggtaaatcattgtgtctct							TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96197256	T	T	96197255	6	5	124	0	1	1	1	0	0	0	0	0	4559	928	32	0		0	DIAPH2	23	96197255	Intron	INS	-	TCGA-44-6147-01A-11D-1753-08	5106414	96197255	59073305	424	114299											
PCDH19	57526	broad.mit.edu	37	chrX	99663168	99663168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggatgcgcgtgccagggCtggctgcctccgagatctcc	16	14	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99663168	A	A	99663168	3	1	124	1	0	0	0	0	1	0	0	0	11608	797	28	3	3042	3	PCDH19	23	99663168	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	3465913	99663168	55607392	425	114300											
SYTL4	94121	broad.mit.edu	37	chrX	99955913	99955913	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctccttctgccgctcCtgaatgatctttcttcctgg	9	14	3	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99955913	G	G	99955913	3	3	124	1	0	0	0	0	1	0	0	0	15604	680	24	4	1548	4	SYTL4	23	99955913	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	292745	99955913	55314647	426	114301											
DRP2	1821	broad.mit.edu	37	chrX	100515012	100515012	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaggaaggcaaatccacTtaagtcatgccttacctctt	8	11	3	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100515012	G	G	100515012	1	3	124	0	1	0	0	0	0	0	0	0	4804	1624	56	5		5	DRP2	23	100515012	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	559099	100515012	54755548	427	114302											
NGFRAP1	27018	broad.mit.edu	37	chrX	102632569	102632569	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctaattttcgatgggcCatacccaataggcagatcaa	8	12	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102632569	A	A	102632569	2	1	124	1	0	0	0	0	0	0	0	1	10492	581	21	2		2	NGFRAP1	23	102632569	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	2117557	102632569	52637991	428	114303											
ESX1	80712	broad.mit.edu	37	chrX	103495442	103495442	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaacacacaaagcaggatCcagagcaggagcagcataat	10	9	0	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103495442	T	T	103495442	3	4	124	1	0	0	0	0	1	0	0	0	5305	855	30	4	536	4	ESX1	23	103495442	Missense_Mutation	SNP	C	TCGA-44-6147-01A-11D-1753-08	862873	103495442	51775118	429	114304											
IRS4	8471	broad.mit.edu	37	chrX	107978288	107978288	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcggcgaaaaaagctggcCggcactgaaaccgctctcct	11	13	1	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107978288	A	A	107978288	2	1	124	1	0	0	0	0	0	0	0	1	7912	639	23	1		1	IRS4	23	107978288	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	4482846	107978288	47292272	430	114305											
LUZP4	51213	broad.mit.edu	37	chrX	114536683	114536683	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcatagacatcgccatcGgagaggtaaagtatgctgaa	11	8	1	3			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114536683	A	A	114536683	3	1	124	1	0	0	0	0	1	0	0	0	9175	1116	39	4	224	4	LUZP4	23	114536683	Missense_Mutation	SNP	G	TCGA-44-6147-01A-11D-1753-08	6558395	114536683	40733877	431	114306											
HTATSF1	27336	broad.mit.edu	37	chrX	135582376	135582376	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtgtctggtatgtataacTttttaaacaggtttaaggta	9	4	1	0			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135582376	A	A	135582376	1	1	124	0	1	0	0	0	0	0	0	0	7503	1624	56	5		5	HTATSF1	23	135582376	Intron	SNP	T	TCGA-44-6147-01A-11D-1753-08	21045693	135582376	19688184	432	114307											
VGLL1	51442	broad.mit.edu	37	chrX	135631167	135631167	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcccggctcagttcacTgtaaggaaatgcctacagat	9	12	2	1			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135631167	A	A	135631167	3	1	124	1	0	0	0	0	1	0	0	0	17285	1594	55	5	640	5	VGLL1	23	135631167	Missense_Mutation	SNP	T	TCGA-44-6147-01A-11D-1753-08	48791	135631167	19639393	433	114308											
GABRQ	55879	broad.mit.edu	37	chrX	151821552	151821552	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgagctcatggcccatggCcaagagaaggacagtagctc	13	10	1	2			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151821552	A	A	151821552	2	1	124	1	0	0	0	0	0	0	0	1	6235	726	26	3		3	GABRQ	23	151821552	Silent	SNP	C	TCGA-44-6147-01A-11D-1753-08	16190385	151821552	3449008	434	114309											
EIF4G3	8672	broad.mit.edu	37	chr1	21188700	21188701	+	Intron	INS	-	T	T													ctggaccagcaggcttattaINSttattttttttcccactcac							TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21188701	T	T	21188700	6	5	125	0	1	1	1	0	0	0	0	0	5080	464	16	0		0	EIF4G3	1	21188700	Intron	INS	-	TCGA-44-6148-01A-11D-1753-08		21188700	228061921	1	114310											
DAP3	7818	broad.mit.edu	37	chr1	155707980	155707980	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggaaaaaagagctgctgTtcctaagtaacgcgaacccc	10	10	0	1			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155707980	C	C	155707980	3	2	125	1	0	0	0	0	1	0	0	0	4267	1725	60	5	1190	5	DAP3	1	155707980	Missense_Mutation	SNP	T	TCGA-44-6148-01A-11D-1753-08	134519280	155707980	93542641	2	114311											
SEMA4A	64218	broad.mit.edu	37	chr1	156146629	156146629	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggcctccccattgagagcActccgggctcggggcaaggt	15	13	0	1			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156146629	T	T	156146629	2	4	125	1	0	0	0	0	0	0	0	1	14144	146	6	5		5	SEMA4A	1	156146629	Silent	SNP	A	TCGA-44-6148-01A-11D-1753-08	438649	156146629	93103992	3	114312											
RHBG	57127	broad.mit.edu	37	chr1	156337524	156337524	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgagttcctgaacacacGggatgcttacactgccaggc	10	13	0	2			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156337524	T	T	156337524	1	4	125	0	1	0	0	0	0	0	0	0	13433	1131	39	1		1	RHBG	1	156337524	5'Flank	SNP	G	TCGA-44-6148-01A-11D-1753-08	190895	156337524	92913097	4	114313											
PYHIN1	149628	broad.mit.edu	37	chr1	158946428	158946428	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggagaggcagtgtgattgAagaaagaaatgtatgactcc	14	4	0	6			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158946428	C	C	158946428	1	2	125	0	1	0	0	0	0	0	0	0	12973	261	9	5		5	PYHIN1	1	158946428	Intron	SNP	A	TCGA-44-6148-01A-11D-1753-08	2608904	158946428	90304193	5	114314											
HMCN1	83872	broad.mit.edu	37	chr1	186082199	186082199	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgtgcttatcttactgCttttgaaaaaggcaacgtgg	10	8	1	1			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186082199	T	T	186082199	1	4	125	0	1	0	0	0	0	0	0	0	7287	812	28	4		4	HMCN1	1	186082199	Intron	SNP	C	TCGA-44-6148-01A-11D-1753-08	27135771	186082199	63168422	6	114315											
HADHA	3030	broad.mit.edu	37	chr2	26416532	26416532	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agactttgcccagatcttccGccacatgtttcgctacatcc	6	15	1	2			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26416532	C	C	26416532	3	2	125	1	0	0	0	0	1	0	0	0	7009	1087	38	4	508	4	HADHA	2	26416532	Missense_Mutation	SNP	G	TCGA-44-6148-01A-11D-1753-08		26416532	216782841	7	114316											
FABP1	2168	broad.mit.edu	37	chr2	88425638	88425638	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtttgagccttgaggaatgAggtcccagggccaggttcca	15	9	0	3			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88425638	G	G	88425638	1	3	125	0	1	0	0	0	0	0	0	0	5401	319	11	5		5	FABP1	2	88425638	Intron	SNP	A	TCGA-44-6148-01A-11D-1753-08	62009106	88425638	154773735	8	114317											
FAM123C	205147	broad.mit.edu	37	chr2	131521595	131521595	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcctgggccaccaggggtCctggggtgtttccgaggccc	17	13	0	0			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131521595	T	T	131521595	2	4	125	1	0	0	0	0	0	0	0	1	5470	842	30	4		4	FAM123C	2	131521595	Silent	SNP	C	TCGA-44-6148-01A-11D-1753-08	43095957	131521595	111677778	9	114318											
MARCH7	64844	broad.mit.edu	37	chr2	160605499	160605499	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttcttttctttttttttTttttttttgagacggagtct	5	4	3	1			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160605499	C	C	160605499	1	2	125	0	1	0	0	0	0	0	0	0	9398	1856	64	5		5	MARCH7	2	160605499	Intron	SNP	T	TCGA-44-6148-01A-11D-1753-08	29083904	160605499	82593874	10	114319											
PLA2R1	22925	broad.mit.edu	37	chr2	160879404	160879404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaacaatgtcattttcCacaattattttaacattact	1	8	1	0			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160879404	A	A	160879404	1	1	125	0	1	0	0	0	0	0	0	0	12105	609	21	2		2	PLA2R1	2	160879404	Intron	SNP	C	TCGA-44-6148-01A-11D-1753-08	273905	160879404	82319969	11	114320											
ASB18	401036	broad.mit.edu	37	chr2	237172866	237172866	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatcacagcgtccacaggCgtgatttcagtgcagattaa	9	10	3	2			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237172866	T	T	237172866	2	4	125	1	0	0	0	0	0	0	0	1	1026	755	27	4		4	ASB18	2	237172866	Silent	SNP	C	TCGA-44-6148-01A-11D-1753-08	76293462	237172866	6026507	12	114321											
MYRIP	25924	broad.mit.edu	37	chr3	40231754	40231754	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgcagctgagaagatgCgcttgcatggagagctggac	14	10	0	3			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40231754	T	T	40231754	3	4	125	1	0	0	0	0	1	0	0	0	10194	768	27	4	1499	4	MYRIP	3	40231754	Missense_Mutation	SNP	C	TCGA-44-6148-01A-11D-1753-08		40231754	157790676	13	114322											
PARP3	10039	broad.mit.edu	37	chr3	51982371	51982371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggatggccagcaagtgGtggtgccccagggccagcct	16	12	0	0			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51982371	A	A	51982371	3	1	125	1	0	0	0	0	1	0	0	0	11556	1261	44	4	1540	4	PARP3	3	51982371	Missense_Mutation	SNP	G	TCGA-44-6148-01A-11D-1753-08	11750617	51982371	146040059	14	114323											
ITGA1	3672	broad.mit.edu	37	chr5	52218564	52218564	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacaagatcagaacacccgGtaaatatgataccagtgata	7	8	1	4			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52218564	A	A	52218564	1	1	125	0	1	0	0	0	0	0	0	0	7942	1276	44	4		4	ITGA1	5	52218564	Intron	SNP	G	TCGA-44-6148-01A-11D-1753-08		52218564	128696696	15	114324											
ZFPM2	23414	broad.mit.edu	37	chr8	106813779	106813779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcagcctaatattgggcCttctttccctgtgggccctt	9	12	2	0			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106813779	A	A	106813779	3	1	125	1	0	0	0	0	1	0	0	0	17784	681	24	2	1499	2	ZFPM2	8	106813779	Missense_Mutation	SNP	C	TCGA-44-6148-01A-11D-1753-08		106813779	39550243	16	114325											
SMARCA2	6595	broad.mit.edu	37	chr9	2088667	2088667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctccagcaaatatatTtgaagtacctgcctctgaaa	5	10	1	2			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2088667	C	C	2088667	1	2	125	0	1	0	0	0	0	0	0	0	14883	1856	64	5		5	SMARCA2	9	2088667	Intron	SNP	T	TCGA-44-6148-01A-11D-1753-08		2088667	139124764	17	114326											
AUH	549	broad.mit.edu	37	chr9	94087834	94087834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacctcagttttccttccCaatgaccatgttcaacaaga	4	12	2	2			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94087834	A	A	94087834	1	1	125	0	1	0	0	0	0	0	0	0	1224	609	21	2		2	AUH	9	94087834	Intron	SNP	C	TCGA-44-6148-01A-11D-1753-08	91999167	94087834	47125597	18	114327											
DDX50	79009	broad.mit.edu	37	chr10	70679718	70679718	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtaactgaaatggccaTgaatccacacataaaacagg	8	8	0	2			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70679718	C	C	70679718	3	2	125	1	0	0	0	0	1	0	0	0	4401	1464	51	5	1250	5	DDX50	10	70679718	Missense_Mutation	SNP	T	TCGA-44-6148-01A-11D-1753-08		70679718	64855029	19	114328											
CWF19L2	143884	broad.mit.edu	37	chr11	107299527	107299530	+	Frame_Shift_Del	DEL	AGCA	-	-													taaaaaatgataaaatacccAgcaaatgtagactttgtatc							TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107299530	-	-	107299527	7	5	125	1	0	1	0	1	0	0	0	0	4105	175	7	0	1297	0	CWF19L2	11	107299527	Frame_Shift_Del	DEL	AGCA	TCGA-44-6148-01A-11D-1753-08		107299527	27706989	20	114329											
CASC1	55259	broad.mit.edu	37	chr12	25307261	25307261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaatacctacatttagcaCtactttactcttctcaatca	1	11	3	0			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25307261	A	A	25307261	3	1	125	1	0	0	0	0	1	0	0	0	2686	565	20	3	1782	3	CASC1	12	25307261	Missense_Mutation	SNP	C	TCGA-44-6148-01A-11D-1753-08		25307261	108544634	21	114330											
MYH7	4625	broad.mit.edu	37	chr14	23887505	23887505	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctccgagttggccttggaAaggacgcgctgcagctcggc	14	13	0	0			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23887505	C	C	23887505	2	2	125	1	0	0	0	0	0	0	0	1	10133	1	1	5		5	MYH7	14	23887505	Silent	SNP	A	TCGA-44-6148-01A-11D-1753-08		23887505	83462035	22	114331											
KRT38	8687	broad.mit.edu	37	chr17	39594400	39594400	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatctcattctccagccGggtcttcacgtccagcagca	9	15	4	0			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39594400	T	T	39594400	2	4	125	1	0	0	0	0	0	0	0	1	8546	1115	39	1		1	KRT38	17	39594400	Silent	SNP	G	TCGA-44-6148-01A-11D-1753-08		39594400	41600810	23	114332											
PSME3	10197	broad.mit.edu	37	chr17	40986736	40986736	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgctcttcaaatcaaaTacttctttgttcagcttgaa	4	9	6	1			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40986736	A	A	40986736	1	1	125	0	1	0	0	0	0	0	0	0	12814	1421	49	5		5	PSME3	17	40986736	Intron	SNP	T	TCGA-44-6148-01A-11D-1753-08	1392336	40986736	40208474	24	114333											
EFTUD2	9343	broad.mit.edu	37	chr17	42945543	42945543	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagacggtagtttacattaAaaaaaaaaaaaaaagtaggt	7	2	0	1			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42945543	T	T	42945543	1	4	125	0	1	0	0	0	0	0	0	0	5001	29	1	5		5	EFTUD2	17	42945543	Intron	SNP	A	TCGA-44-6148-01A-11D-1753-08	1958807	42945543	38249667	25	114334											
MEGF8	1954	broad.mit.edu	37	chr19	42853599	42853599	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtatcaggggtctgaggAaggaatgggaagggttctga	19	3	3	2			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42853599	G	G	42853599	1	3	125	0	1	0	0	0	0	0	0	0	9556	261	9	5		5	MEGF8	19	42853599	Intron	SNP	A	TCGA-44-6148-01A-11D-1753-08		42853599	16275384	26	114335											
TNFRSF4	7293	broad.mit.edu	37	chr1	1147551	1147551	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaggtgttgctcaggccaGaaaccccctgggacccggga	15	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1147551	C	C	1147551	1	2	126	0	1	0	0	0	0	0	0	0	16420	957	33	4		4	TNFRSF4	1	1147551	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08		1147551	248103070	1	114336											
MMEL1	79258	broad.mit.edu	37	chr1	2524404	2524404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattcttgtcgaagttccgGcctgggcaggggcagaggag	16	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2524404	T	T	2524404	2	4	126	1	0	0	0	0	0	0	0	1	9739	1217	42	3		3	MMEL1	1	2524404	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1376853	2524404	246726217	2	114337											
ZBTB48	3104	broad.mit.edu	37	chr1	6646147	6646147	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacactggcctctctgtcttCgtgccatccgggaagggccc	11	16	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6646147	A	A	6646147	1	1	126	0	1	0	0	0	0	0	0	0	17675	899	31	3		3	ZBTB48	1	6646147	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4121743	6646147	242604474	3	114338											
PHF13	148479	broad.mit.edu	37	chr1	6680330	6680331	+	Nonsense_Mutation	DNP	GG	TT	TT													aaacggactatcgtccggcaGggaaagcaggtggtgttccg							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6680331	TT	TT	6680330	4	4	126	1	0	0	0	0	0	1	0	0	11919	991	35	2	619	2	PHF13	1	6680330	Nonsense_Mutation	DNP	GG	TCGA-44-6774-01A-21D-1855-08	34183	6680330	242570291	4	114339											
CA6	765	broad.mit.edu	37	chr1	9018902	9018902	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttctttctcttcctccttCcctggaaatcttaagcattt	3	13	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9018902	T	T	9018902	1	4	126	0	1	0	0	0	0	0	0	0	2547	870	30	4		4	CA6	1	9018902	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2338572	9018902	240231719	5	114340											
SRM	6723	broad.mit.edu	37	chr1	11119777	11119777	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagaggcccgtgaggcggGcagcaggcggcccgggctga	21	11	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11119777	C	C	11119777	1	2	126	0	1	0	0	0	0	0	0	0	15269	1218	42	4		4	SRM	1	11119777	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2100875	11119777	238130844	6	114341											
PRAMEF11	440560	broad.mit.edu	37	chr1	12888678	12888678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaacttccagaggacaAacccagagaaaaggcatcac	10	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12888678	G	G	12888678	1	3	126	0	1	0	0	0	0	0	0	0	12528	29	1	5		5	PRAMEF11	1	12888678	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	1768901	12888678	236361943	7	114342											
PRAMEF6	440561	broad.mit.edu	37	chr1	13001343	13001343	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagcttcagaccaaaccaTccagaagttctcacagacat	5	13	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13001343	C	C	13001343	3	2	126	1	0	0	0	0	1	0	0	0	12543	1435	50	5	1098	5	PRAMEF6	1	13001343	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	112665	13001343	236249278	8	114343											
HSPB7	27129	broad.mit.edu	37	chr1	16342123	16342123	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggacgtgttctgtatgCgggtgacgccgtgcccggat	16	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16342123	A	A	16342123	2	1	126	1	0	0	0	0	0	0	0	1	7492	755	27	3		3	HSPB7	1	16342123	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	3340780	16342123	232908498	9	114344											
C1orf144	26099	broad.mit.edu	37	chr1	16695692	16695692	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggttaatctggaagtaacAtaatttgtagctatctttgc	8	6	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16695692	T	T	16695692	1	4	126	0	1	0	0	0	0	0	0	0	2022	232	8	5		5	C1orf144	1	16695692	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	353569	16695692	232554929	10	114345											
EPHA8	2046	broad.mit.edu	37	chr1	22920043	22920043	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgcagagctactccacCctcaaggccgtcaccaccag	9	16	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22920043	A	A	22920043	2	1	126	1	0	0	0	0	0	0	0	1	5215	610	22	2		2	EPHA8	1	22920043	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	6224351	22920043	226330578	11	114346											
ASAP3	55616	broad.mit.edu	37	chr1	23759433	23759433	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttcttttatctgtaagGggaagatgagaaccccttcc	9	9	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23759433	T	T	23759433	1	4	126	0	1	0	0	0	0	0	0	0	1016	1247	43	2		2	ASAP3	1	23759433	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	839390	23759433	225491188	12	114347											
RPL11	6135	broad.mit.edu	37	chr1	24018423	24018423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccgaggaatatggagccCgcaatgcctgctggcccaaa	12	13	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24018423	A	A	24018423	1	1	126	0	1	0	0	0	0	0	0	0	13668	667	23	1		1	RPL11	1	24018423	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	258990	24018423	225232198	13	114348											
RCAN3	11123	broad.mit.edu	37	chr1	24840900	24840900	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcttggaatgatagccAgtcagatctgtgtagcactg	11	7	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24840900	T	T	24840900	3	4	126	1	0	0	0	0	1	0	0	0	13278	188	7	5	40	5	RCAN3	1	24840900	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	822477	24840900	224409721	14	114349											
LAPTM5	7805	broad.mit.edu	37	chr1	31230519	31230519	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcaccacatggtagatgGccagggcggtggttgcgatg	15	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31230519	T	T	31230519	3	4	126	1	0	0	0	0	1	0	0	0	8698	1203	42	3	746	3	LAPTM5	1	31230519	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	6389619	31230519	218020102	15	114350											
CSMD2	114784	broad.mit.edu	37	chr1	33987216	33987216	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatctagaactcctctctcAtcatacacgctgcccagcag	7	15	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33987216	G	G	33987216	1	3	126	0	1	0	0	0	0	0	0	0	3979	232	8	5		5	CSMD2	1	33987216	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2756697	33987216	215263405	16	114351											
POMGNT1	55624	broad.mit.edu	37	chr1	46658395	46658395	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttcccccaaatccccacTgtctccattcatccactgta	2	19	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46658395	A	A	46658395	1	1	126	0	1	0	0	0	0	0	0	0	12338	1595	55	5		5	POMGNT1	1	46658395	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	12671179	46658395	202592226	17	114352											
SLC5A9	200010	broad.mit.edu	37	chr1	48708300	48708300	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgaaggtaggctgcggCaggccgggggatactcatca	16	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48708300	T	T	48708300	1	4	126	0	1	0	0	0	0	0	0	0	14786	725	25	4		4	SLC5A9	1	48708300	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2049905	48708300	200542321	18	114353											
SPATA6	54558	broad.mit.edu	37	chr1	48791097	48791097	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccctcccccagcttcttcTtgactgggaccactgcagtt	9	16	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48791097	A	A	48791097	1	1	126	0	1	0	0	0	0	0	0	0	15129	1624	56	5		5	SPATA6	1	48791097	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	82797	48791097	200459524	19	114354											
ORC1L	4998	broad.mit.edu	37	chr1	52850704	52850704	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgtttcagaagctttgggCttcagcaacgatttggtcta	10	7	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52850704	G	G	52850704	1	3	126	0	1	0	0	0	0	0	0	0	11355	812	28	4		4	ORC1L	1	52850704	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4059607	52850704	196399917	20	114355											
PODN	127435	broad.mit.edu	37	chr1	53542969	53542969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtccagcaacttcctgcGccacgtgcccaagcacctgc	8	19	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53542969	T	T	53542969	3	4	126	1	0	0	0	0	1	0	0	0	12273	1087	38	3	855	3	PODN	1	53542969	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	692265	53542969	195707652	21	114356											
USP24	23358	broad.mit.edu	37	chr1	55600100	55600100	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttctcctgatggaaaaaaGcaaaatagaaattcaaattt	5	5	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55600100	A	A	55600100	1	1	126	0	1	0	0	0	0	0	0	0	17181	986	34	4		4	USP24	1	55600100	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2057131	55600100	193650521	22	114357											
JUN	3725	broad.mit.edu	37	chr1	59247873	59247873	+	Frame_Shift_Del	DEL	C	-	-													gtggacgccagctccgagttCtgagctttcaaggttttcac							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59247873	-	-	59247873	7	5	126	1	0	1	0	1	0	0	0	0	8039	912	32	0	129	0	JUN	1	59247873	Frame_Shift_Del	DEL	C	TCGA-44-6774-01A-21D-1855-08	3647773	59247873	190002748	23	114358											
C1orf87	127795	broad.mit.edu	37	chr1	60505798	60505798	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgagttctcttctgaccaGggcaagaagaaaagcgtctt	10	9	3	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60505798	A	A	60505798	2	1	126	1	0	0	0	0	0	0	0	1	2086	991	35	4		4	C1orf87	1	60505798	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1257925	60505798	188744823	24	114359											
INADL	10207	broad.mit.edu	37	chr1	62626589	62626589	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtttgtagggagcagctGcagatgacggccgattaaaa	13	7	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62626589	T	T	62626589	2	4	126	1	0	0	0	0	0	0	0	1	7801	1306	46	3		3	INADL	1	62626589	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	2120791	62626589	186624032	25	114360											
IL23R	149233	broad.mit.edu	37	chr1	67724025	67724027	+	Intron	TNP	TGG	ATT	ATT													gacaaaaggaggaaatcataTgggaagataaacaatatgag					rs11465826		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATT	67724027	ATT	ATT	67724025	1	1	126	0	1	0	0	0	0	0	0	0	7746	1479	51	5		5	IL23R	1	67724025	Intron	TNP	TGG	TCGA-44-6774-01A-21D-1855-08	5097436	67724025	181526596	26	114361	501	2									
IL23R	149233	broad.mit.edu	37	chr1	67724026	67724027	+	Intron	DNP	GG	TT	TT													acaaaaggaggaaatcatatGggaagataaacaatatgaga							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	67724027	TT	TT	67724026	1	4	126	0	1	0	0	0	0	0	0	0	7746	1363	47	2		2	IL23R	1	67724026	Intron	DNP	GG	TCGA-44-6774-01A-21D-1855-08	1	67724026	181526595	27	114362	501	2									
PTGER3	5733	broad.mit.edu	37	chr1	71328207	71328207	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaattaagggaggacaggGgagagtctcatggctttgac	17	5	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71328207	A	A	71328207	1	1	126	0	1	0	0	0	0	0	0	0	12850	1247	43	4		4	PTGER3	1	71328207	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3604181	71328207	177922414	28	114363											
SLC44A5	204962	broad.mit.edu	37	chr1	75684332	75684332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacaaataagttgtataCatggaaggtagggatgtact	11	3	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75684332	A	A	75684332	3	1	126	1	0	0	0	0	1	0	0	0	14753	478	17	3	930	3	SLC44A5	1	75684332	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4356125	75684332	173566289	29	114364											
LPHN2	23266	broad.mit.edu	37	chr1	82407743	82407743	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaggtaaataacatacAgtctgaaccccagctccctg	6	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82407743	T	T	82407743	1	4	126	0	1	0	0	0	0	0	0	0	9003	203	7	5		5	LPHN2	1	82407743	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	6723411	82407743	166842878	30	114365											
LPHN2	23266	broad.mit.edu	37	chr1	82432281	82432281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctgtgctttttaccctGccacacattgatgtaagtta	7	10	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82432281	T	T	82432281	2	4	126	1	0	0	0	0	0	0	0	1	9003	1306	46	3		3	LPHN2	1	82432281	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	24538	82432281	166818340	31	114366											
CYR61	3491	broad.mit.edu	37	chr1	86047525	86047525	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccataaattgaatttaacAgcagaaaatatgtatgagtt	6	4	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86047525	T	T	86047525	1	4	126	0	1	0	0	0	0	0	0	0	4232	203	7	5		5	CYR61	1	86047525	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	3615244	86047525	163203096	32	114367											
BTBD8	284697	broad.mit.edu	37	chr1	92554451	92554451	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaatttagaacgtttttaCagtaagtgctttctttatcc	6	6	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92554451	T	T	92554451	4	4	126	1	0	0	0	0	0	1	0	0	1557	492	17	4	352	4	BTBD8	1	92554451	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	6506926	92554451	156696170	33	114368											
VCAM1	7412	broad.mit.edu	37	chr1	101185498	101185498	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtaagttatttcccttcAtctgtttcaaatgttagcat	5	8	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101185498	T	T	101185498	1	4	126	0	1	0	0	0	0	0	0	0	17264	232	8	5		5	VCAM1	1	101185498	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	8631047	101185498	148065123	34	114369											
COL11A1	1301	broad.mit.edu	37	chr1	103355036	103355036	+	Frame_Shift_Del	DEL	C	-	-													ccccttttgctcctggagatCcttgagttccagggagccct							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103355036	-	-	103355036	7	5	126	1	0	1	0	1	0	0	0	0	3699	855	30	0	1017	0	COL11A1	1	103355036	Frame_Shift_Del	DEL	C	TCGA-44-6774-01A-21D-1855-08	2169538	103355036	145895585	35	114370											
COL11A1	1301	broad.mit.edu	37	chr1	103467330	103467330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgaatgaaatctccccaCactatatttccatgtcgact	4	12	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103467330	A	A	103467330	1	1	126	0	1	0	0	0	0	0	0	0	3699	493	17	3		3	COL11A1	1	103467330	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	112294	103467330	145783291	36	114371											
CHI3L2	1117	broad.mit.edu	37	chr1	111773424	111773424	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaggaccggcaggaaccagGaaaattcacccctgagaata	10	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111773424	A	A	111773424	3	1	126	1	0	0	0	0	1	0	0	0	3372	1174	41	4	141	4	CHI3L2	1	111773424	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	8306094	111773424	137477197	37	114372											
RSBN1	54665	broad.mit.edu	37	chr1	114354250	114354250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggtaagcaggggtttGgcgtctttcagtcctaaaga	13	7	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114354250	T	T	114354250	1	4	126	0	1	0	0	0	0	0	0	0	13807	1363	47	2		2	RSBN1	1	114354250	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2580826	114354250	134896371	38	114373											
ANKRD34A	284615	broad.mit.edu	37	chr1	145473875	145473875	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagcccggggttctgcacgTcgccttcggaaatccaactg	11	14	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145473875	A	A	145473875	3	1	126	1	0	0	0	0	1	0	0	0	662	1667	58	5	549	5	ANKRD34A	1	145473875	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	31119625	145473875	103776746	39	114374											
NBPF15	284565	broad.mit.edu	37	chr1	148594232	148594232	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgttttctacctggcccTgttctatcccaacataaagg	6	12	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148594232	C	C	148594232	1	2	126	0	1	0	0	0	0	0	0	0	10290	1595	55	5		5	NBPF15	1	148594232	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	3120357	148594232	100656389	40	114375											
CELF3	11189	broad.mit.edu	37	chr1	151681891	151681891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcccagcccttcttcCgcccttccctggagctccta	6	20	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151681891	A	A	151681891	1	1	126	0	1	0	0	0	0	0	0	0	3247	667	23	1		1	CELF3	1	151681891	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3087659	151681891	97568730	41	114376											
FLG	2312	broad.mit.edu	37	chr1	152283761	152283761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcatcagaccttccctGggatgtggtgtggctgtgat	16	8	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283761	T	T	152283761	3	4	126	1	0	0	0	0	1	0	0	0	5979	1357	47	2	8588	2	FLG	1	152283761	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	601870	152283761	96966860	42	114377											
LCE2C	353140	broad.mit.edu	37	chr1	152648743	152648743	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgtctcttccaccggcgCcggcaccagagccccgactg	10	21	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152648743	A	A	152648743	2	1	126	1	0	0	0	0	0	0	0	1	8739	726	26	3		3	LCE2C	1	152648743	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	364982	152648743	96601878	43	114378											
IL6R	3570	broad.mit.edu	37	chr1	154422457	154422457	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcgacaagcctcccagGtaaggactgggtattttcat	10	9	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154422457	A	A	154422457	5	1	126	1	0	0	0	0	0	0	1	0	7772	1275	44	4	1097	4	IL6R	1	154422457	Splice_Site	SNP	G	TCGA-44-6774-01A-21D-1855-08	1773714	154422457	94828164	44	114379											
FCRL3	115352	broad.mit.edu	37	chr1	157659522	157659522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgacctttatagggtgcaCcagacaacttcaaattatta	6	9	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157659522	A	A	157659522	1	1	126	0	1	0	0	0	0	0	0	0	5853	522	18	3		3	FCRL3	1	157659522	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3237065	157659522	91591099	45	114380											
CRP	1401	broad.mit.edu	37	chr1	159684154	159684154	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgagactgttcatgcagTcttagaccccacccccatac	6	14	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159684154	A	A	159684154	1	1	126	0	1	0	0	0	0	0	0	0	3927	1682	58	5		5	CRP	1	159684154	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	2024632	159684154	89566467	46	114381											
RXRG	6258	broad.mit.edu	37	chr1	165370562	165370562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcaatgggggtgtcccCgatgagcttgaagaagaaga	16	6	1	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165370562	A	A	165370562	3	1	126	1	0	0	0	0	1	0	0	0	13876	652	23	1	65	1	RXRG	1	165370562	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	5686408	165370562	83880059	47	114382											
F5	2153	broad.mit.edu	37	chr1	169510755	169510755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggagagagggtcacctgGctgaggtctggagagatgac	17	7	3	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169510755	T	T	169510755	3	4	126	1	0	0	0	0	1	0	0	0	5391	1194	42	3	3153	3	F5	1	169510755	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	4140193	169510755	79739866	48	114383											
C1orf129	80133	broad.mit.edu	37	chr1	170955900	170955900	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagggtttactctctaatGtgcatttttgcctgtgttgt	9	8	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170955900	A	A	170955900	1	1	126	0	1	0	0	0	0	0	0	0	2016	1392	48	4		4	C1orf129	1	170955900	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1445145	170955900	78294721	49	114384											
TNN	63923	broad.mit.edu	37	chr1	175096160	175096160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcatattgacctggacgcCcccctctgctcagatccacg	9	16	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175096160	A	A	175096160	3	1	126	1	0	0	0	0	1	0	0	0	16446	623	22	2	3030	2	TNN	1	175096160	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4140260	175096160	74154461	50	114385											
PAPPA2	60676	broad.mit.edu	37	chr1	176661496	176661496	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagctggcttatttctcTgtggcatttcatatgaatga	11	6	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176661496	G	G	176661496	1	3	126	0	1	0	0	0	0	0	0	0	11527	1595	55	5		5	PAPPA2	1	176661496	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	1565336	176661496	72589125	51	114386											
ASTN1	460	broad.mit.edu	37	chr1	176915238	176915238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtccatccacaccaagCttgtagtcctcgatgcacct	8	15	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176915238	A	A	176915238	3	1	126	1	0	0	0	0	1	0	0	0	1068	796	28	3	1859	3	ASTN1	1	176915238	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	253742	176915238	72335383	52	114387											
TPR	7175	broad.mit.edu	37	chr1	186305610	186305610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcactaccaagttcaaaCtttaaacagatatttaccag	3	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186305610	A	A	186305610	1	1	126	0	1	0	0	0	0	0	0	0	16540	580	20	3		3	TPR	1	186305610	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	9390372	186305610	62945011	53	114388											
FAM5C	339479	broad.mit.edu	37	chr1	190068080	190068080	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgccgcagcgggtgcGgttgtctggtgcgcatgtca	18	10	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190068080	C	C	190068080	3	2	126	1	0	0	0	0	1	0	0	0	5645	1116	39	4	935	4	FAM5C	1	190068080	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	3762470	190068080	59182541	54	114389											
IGFN1	91156	broad.mit.edu	37	chr1	201197371	201197371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaagcttagagagcacGtggtggctccagatttgaac	12	10	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201197371	T	T	201197371	1	4	126	0	1	0	0	0	0	0	0	0	7660	1160	40	3		3	IGFN1	1	201197371	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	11129291	201197371	48053250	55	114390											
NAV1	89796	broad.mit.edu	37	chr1	201749427	201749427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacctaggacaaacccccaGgttttctccttttggctagc	7	13	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201749427	T	T	201749427	1	4	126	0	1	0	0	0	0	0	0	0	10277	1015	35	2		2	NAV1	1	201749427	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	552056	201749427	47501194	56	114391											
CR1	1378	broad.mit.edu	37	chr1	207739133	207739133	+	Intron	SNP	T	G	G													gccttagattgtgaactaagTgtcctcttggctgaaacagc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207739133	G	G	207739133	1	3	126	0	1	0	0	0	0	0	0	0	3872	1711	59	5		5	CR1	1	207739133	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	5989706	207739133	41511488	57	114392	502	2									
CR1	1378	broad.mit.edu	37	chr1	207739136	207739136	+	Intron	SNP	C	T	T													ttagattgtgaactaagtgtCctcttggctgaaacagctca							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207739136	T	T	207739136	1	4	126	0	1	0	0	0	0	0	0	0	3872	870	30	4		4	CR1	1	207739136	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3	207739136	41511485	58	114393	502	2									
CR1	1378	broad.mit.edu	37	chr1	207739213	207739213	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcagctctgctagttaTtgtgtcttggctggaatgga	13	6	2	0	rs56229517		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207739213	C	C	207739213	2	2	126	1	0	0	0	0	0	0	0	1	3872	1500	52	5		5	CR1	1	207739213	Silent	SNP	T	TCGA-44-6774-01A-21D-1855-08	77	207739213	41511408	59	114394											
LOC642587	642587	broad.mit.edu	37	chr1	209603726	209603726	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaagaactcacctttctGgggctctctgacattaatgc	9	10	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209603726	A	A	209603726	1	1	126	0	1	0	0	0	0	0	0	0	8965	1363	47	4		4	LOC642587	1	209603726	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1864513	209603726	39646895	60	114395											
CENPF	1063	broad.mit.edu	37	chr1	214782026	214782026	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggcccgcagggtccccAagggggcggccccggcccca	17	17	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214782026	G	G	214782026	1	3	126	0	1	0	0	0	0	0	0	0	3261	145	5	5		5	CENPF	1	214782026	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	5178300	214782026	34468595	61	114396											
USH2A	7399	broad.mit.edu	37	chr1	216011316	216011316	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagttccttagatttaactGacacaaaattttgtaccttg	6	7	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216011316	T	T	216011316	1	4	126	0	1	0	0	0	0	0	0	0	17162	1305	45	3		3	USH2A	1	216011316	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1229290	216011316	33239305	62	114397											
ESRRG	2104	broad.mit.edu	37	chr1	216741278	216741278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctgatgtacatagagcCaactgggaggatttcgtgtt	12	6	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216741278	A	A	216741278	1	1	126	0	1	0	0	0	0	0	0	0	5304	609	21	2		2	ESRRG	1	216741278	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	729962	216741278	32509343	63	114398											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220406195	220406195	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccatcatcttcccagtcTgttgatttacctgtttttaa	4	11	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220406195	C	C	220406195	2	2	126	1	0	0	0	0	0	0	0	1	13044	1567	55	5		5	RAB3GAP2	1	220406195	Silent	SNP	T	TCGA-44-6774-01A-21D-1855-08	3664917	220406195	28844426	64	114399											
TAF1A	9015	broad.mit.edu	37	chr1	222736579	222736579	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttatattcttagtgcatcCggcaaaatctaagactccaa	6	9	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222736579	A	A	222736579	4	1	126	1	0	0	0	0	0	1	0	0	15638	661	23	1	343	1	TAF1A	1	222736579	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2330384	222736579	26514042	65	114400											
OBSCN	84033	broad.mit.edu	37	chr1	228463741	228463741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagagtgagccgcgggcGggaagggcggggcatcgagg	24	7	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228463741	T	T	228463741	1	4	126	0	1	0	0	0	0	0	0	0	10907	1131	39	1		1	OBSCN	1	228463741	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	5727162	228463741	20786880	66	114401											
PCNXL2	80003	broad.mit.edu	37	chr1	233394270	233394270	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcacttccattgccttcGggacagggaacacctcctcc	7	16	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233394270	T	T	233394270	2	4	126	1	0	0	0	0	0	0	0	1	11686	1103	39	1		1	PCNXL2	1	233394270	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	4930529	233394270	15856351	67	114402											
KIAA1804	84451	broad.mit.edu	37	chr1	233512327	233512327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtccttggcatctgattGtgctgaagctttgcttttac	10	9	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233512327	A	A	233512327	1	1	126	0	1	0	0	0	0	0	0	0	8329	1392	48	4		4	KIAA1804	1	233512327	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	118057	233512327	15738294	68	114403											
HEATR1	55127	broad.mit.edu	37	chr1	236729099	236729099	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaaactacacaatcaaaTtaaaatgattaacttacttt	2	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236729099	C	C	236729099	1	2	126	0	1	0	0	0	0	0	0	0	7094	1508	52	5		5	HEATR1	1	236729099	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	3216772	236729099	12521522	69	114404											
RYR2	6262	broad.mit.edu	37	chr1	237656342	237656342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgacaatctcctaccagGaagagacttgttattgcaga	9	9	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237656342	T	T	237656342	3	4	126	1	0	0	0	0	1	0	0	0	13880	1174	41	3	1990	3	RYR2	1	237656342	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	927243	237656342	11594279	70	114405											
RYR2	6262	broad.mit.edu	37	chr1	237660131	237660131	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaagctattggtgctgcttCcattaggtacttctataggg	11	7	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237660131	T	T	237660131	1	4	126	0	1	0	0	0	0	0	0	0	13880	870	30	4		4	RYR2	1	237660131	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3789	237660131	11590490	71	114406											
RYR2	6262	broad.mit.edu	37	chr1	237753866	237753866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattctgaaaacgtgatgtGccttagtcatctttagaatc	9	7	3	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237753866	T	T	237753866	1	4	126	0	1	0	0	0	0	0	0	0	13880	1334	46	3		3	RYR2	1	237753866	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	93735	237753866	11496755	72	114407											
RYR2	6262	broad.mit.edu	37	chr1	237906849	237906850	+	Intron	DNP	CA	AG	AG													tatagtctatccgttgtcttCagagcaattgtttattgcta							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	237906850	AG	AG	237906849	1	1	126	0	1	0	0	0	0	0	0	0	13880	841	29	3		3	RYR2	1	237906849	Intron	DNP	CA	TCGA-44-6774-01A-21D-1855-08	152983	237906849	11343772	73	114408											
FMN2	56776	broad.mit.edu	37	chr1	240308011	240308012	+	Intron	INS	-	ATCA	ATCA													acctttgtgtatgcattctcINSatcaatgtccttctccagca							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATCA	240308012	ATCA	ATCA	240308011	6	5	126	0	1	1	1	0	0	0	0	0	6008	841	29	0		0	FMN2	1	240308011	Intron	INS	-	TCGA-44-6774-01A-21D-1855-08	2401162	240308011	8942610	74	114409											
OR2M7	391196	broad.mit.edu	37	chr1	248486947	248486947	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaactcaatctccagacttGccctttcctaagattttcat	4	12	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248486947	T	T	248486947	2	4	126	1	0	0	0	0	0	0	0	1	11108	1306	46	3		3	OR2M7	1	248486947	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	8178936	248486947	763674	75	114410											
OR2M7	391196	broad.mit.edu	37	chr1	248487446	248487446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagaaggcagtcataagtCcacaaattttgggtctcatg	11	7	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248487446	A	A	248487446	3	1	126	1	0	0	0	0	1	0	0	0	11108	855	30	3	516	3	OR2M7	1	248487446	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	499	248487446	763175	76	114411											
GREB1	9687	broad.mit.edu	37	chr2	11732998	11732998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccggcagtaccagcaggCgccgccgcagcccttcccgc	12	19	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11732998	T	T	11732998	3	4	126	1	0	0	0	0	1	0	0	0	6826	768	27	4	1588	4	GREB1	2	11732998	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08		11732998	231466375	77	114412											
GREB1	9687	broad.mit.edu	37	chr2	11758308	11758308	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgggtgactcctgggacagGtcactcctgggatgggtgac	16	9	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11758308	C	C	11758308	1	2	126	0	1	0	0	0	0	0	0	0	6826	1276	44	4		4	GREB1	2	11758308	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	25310	11758308	231441065	78	114413											
APOB	338	broad.mit.edu	37	chr2	21256135	21256135	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttcagtcagttaccatcAgttttataaaaagttgagct	7	6	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21256135	T	T	21256135	1	4	126	0	1	0	0	0	0	0	0	0	787	203	7	5		5	APOB	2	21256135	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	9497827	21256135	221943238	79	114414											
ITSN2	50618	broad.mit.edu	37	chr2	24535030	24535030	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaatactcaaatatgcctaGggataaagtttaagtagcaa	7	6	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24535030	C	C	24535030	1	2	126	0	1	0	0	0	0	0	0	0	7997	1015	35	4		4	ITSN2	2	24535030	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3278895	24535030	218664343	80	114415											
EHD3	30845	broad.mit.edu	37	chr2	31472324	31472324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctctggggagaagcagagGatcagccggggtaagcaacc	15	10	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31472324	T	T	31472324	3	4	126	1	0	0	0	0	1	0	0	0	5019	1165	41	3	502	3	EHD3	2	31472324	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	6937294	31472324	211727049	81	114416											
NRXN1	9378	broad.mit.edu	37	chr2	50724419	50724419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatatttttggaaattgacGtccatttttccaaagtttta	6	5	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50724419	T	T	50724419	1	4	126	0	1	0	0	0	0	0	0	0	10760	1160	40	3		3	NRXN1	2	50724419	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	19252095	50724419	192474954	82	114417											
SPTBN1	6711	broad.mit.edu	37	chr2	54839186	54839186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtgtttgttaatgttctGctctgagcgggagagcattg	13	6	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54839186	T	T	54839186	1	4	126	0	1	0	0	0	0	0	0	0	15237	1334	46	3		3	SPTBN1	2	54839186	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	4114767	54839186	188360187	83	114418											
VRK2	7444	broad.mit.edu	37	chr2	58276144	58276144	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaattattcttatatctgtGactgtaaccgtgattactta	5	7	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58276144	T	T	58276144	1	4	126	0	1	0	0	0	0	0	0	0	17347	1305	45	3		3	VRK2	2	58276144	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3436958	58276144	184923229	84	114419											
BCL11A	53335	broad.mit.edu	37	chr2	60780422	60780424	+	5'UTR	DEL	GGC	-	-													acatggtgggctgcggggcgGgcggcggcggcggcggcggc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60780424	-	-	60780422	6	5	126	0	1	1	0	1	0	0	0	0	1368	1247	43	0		0	BCL11A	2	60780422	5'UTR	DEL	GGC	TCGA-44-6774-01A-21D-1855-08	2504278	60780422	182418951	85	114420											
WDR92	116143	broad.mit.edu	37	chr2	68352471	68352471	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctccatcaagctgtttgCagacaagattccaaagacag	7	11	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68352471	A	A	68352471	1	1	126	0	1	0	0	0	0	0	0	0	17466	725	25	3		3	WDR92	2	68352471	RNA	SNP	C	TCGA-44-6774-01A-21D-1855-08	7572049	68352471	174846902	86	114421											
ACTG2	72	broad.mit.edu	37	chr2	74146648	74146648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagcagatgtggatcagCaagcctgagtatgatgaggc	13	8	1	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74146648	A	A	74146648	3	1	126	1	0	0	0	0	1	0	0	0	197	709	25	3	1107	3	ACTG2	2	74146648	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	5794177	74146648	169052725	87	114422											
C2orf89	129293	broad.mit.edu	37	chr2	85051250	85051250	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggatacggcttctggtgcCggtacttccagggtagggac	16	9	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85051250	T	T	85051250	2	4	126	1	0	0	0	0	0	0	0	1	2225	639	23	4		4	C2orf89	2	85051250	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	10904602	85051250	158148123	88	114423											
GGCX	2677	broad.mit.edu	37	chr2	85781595	85781595	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgttgttgttgttgttGttgttgttgttgaaacgaag	13	1	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85781595	A	A	85781595	1	1	126	0	1	0	0	0	0	0	0	0	6420	1392	48	4		4	GGCX	2	85781595	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	730345	85781595	157417778	89	114424											
GPAT2	150763	broad.mit.edu	37	chr2	96687911	96687911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctcctcacagttctagCtacaaatgaactgccggatg	8	13	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96687911	A	A	96687911	3	1	126	1	0	0	0	0	1	0	0	0	6654	797	28	3	7	3	GPAT2	2	96687911	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	10906316	96687911	146511462	90	114425											
LONRF2	164832	broad.mit.edu	37	chr2	100903581	100903581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagtaatgcacgtaacaCagtcagcgacctctgcacct	7	14	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100903581	A	A	100903581	1	1	126	0	1	0	0	0	0	0	0	0	8982	493	17	3		3	LONRF2	2	100903581	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4215670	100903581	142295792	91	114426											
MFSD9	84804	broad.mit.edu	37	chr2	103353273	103353273	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacccccaagctccataccCgcgccggccgggggtcggac	13	18	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103353273	A	A	103353273	1	1	126	0	1	0	0	0	0	0	0	0	9632	667	23	1		1	MFSD9	2	103353273	5'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	2449692	103353273	139846100	92	114427											
SLC5A7	60482	broad.mit.edu	37	chr2	108604753	108604753	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatcatagttggtggccgaGatattggtttattggttggt	13	5	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108604753	T	T	108604753	3	4	126	1	0	0	0	0	1	0	0	0	14784	942	33	3	144	3	SLC5A7	2	108604753	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	5251480	108604753	134594620	93	114428											
RANBP2	5903	broad.mit.edu	37	chr2	109383771	109383771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagaaaaaatcttttccGttttggtgagtcaacaacag	9	6	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109383771	T	T	109383771	3	4	126	1	0	0	0	0	1	0	0	0	13136	1145	40	3	6854	3	RANBP2	2	109383771	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	779018	109383771	133815602	94	114429											
MARCO	8685	broad.mit.edu	37	chr2	119748250	119748250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatccctcggagtgatgacGgggaaggcctgccttctcag	13	12	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119748250	T	T	119748250	1	4	126	0	1	0	0	0	0	0	0	0	9403	1131	39	1		1	MARCO	2	119748250	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	10364479	119748250	123451123	95	114430											
CNTNAP5	129684	broad.mit.edu	37	chr2	125232346	125232346	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaattccagtaccaggaAaacctgggacctttttaaag	10	8	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125232346	T	T	125232346	4	4	126	1	0	0	0	0	0	1	0	0	3682	15	1	5	975	5	CNTNAP5	2	125232346	Nonsense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	5484096	125232346	117967027	96	114431											
MYO7B	4648	broad.mit.edu	37	chr2	128346154	128346154	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctcccaggcaccctcctgGgtctgtcacccctgatggct	11	17	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128346154	C	C	128346154	1	2	126	0	1	0	0	0	0	0	0	0	10177	1247	43	4		4	MYO7B	2	128346154	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3113808	128346154	114853219	97	114432											
UGGT1	56886	broad.mit.edu	37	chr2	128941189	128941189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgttccattattcattgGgtttagttttcctgtcgtaa	8	8	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128941189	T	T	128941189	1	4	126	0	1	0	0	0	0	0	0	0	17067	1247	43	2		2	UGGT1	2	128941189	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	595035	128941189	114258184	98	114433											
CCDC74B	91409	broad.mit.edu	37	chr2	130900020	130900020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagagcatggcctcttccCgtgtcctgtcagcgtcccca	12	15	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130900020	A	A	130900020	1	1	126	0	1	0	0	0	0	0	0	0	2876	667	23	1		1	CCDC74B	2	130900020	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1958831	130900020	112299353	99	114434											
PLEKHB2	55041	broad.mit.edu	37	chr2	132066592	132066592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccatcagccagcaggccCctgccatcatctgtgacttc	8	16	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132066592	A	A	132066592	1	1	126	0	1	0	0	0	0	0	0	0	12160	638	22	2		2	PLEKHB2	2	132066592	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1166572	132066592	111132781	100	114435											
YSK4	80122	broad.mit.edu	37	chr2	135779380	135779380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatcatgacaaatgtcaaGcaatgactcagcatgtcttt	7	8	4	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135779380	T	T	135779380	3	4	126	1	0	0	0	0	1	0	0	0	17622	971	34	3	3979	3	YSK4	2	135779380	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	3712788	135779380	107419993	101	114436											
LRP1B	53353	broad.mit.edu	37	chr2	141093256	141093256	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtctggtgcagttggggCcattcagctgccctacgttg	14	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141093256	T	T	141093256	3	4	126	1	0	0	0	0	1	0	0	0	9042	739	26	4	1811	4	LRP1B	2	141093256	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	5313876	141093256	102106117	102	114437											
KIF5C	3800	broad.mit.edu	37	chr2	149840154	149840154	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actacattgacaaccacacaGagagagctgagccagctaca	8	12	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149840154	T	T	149840154	3	4	126	1	0	0	0	0	1	0	0	0	8377	933	33	3	1570	3	KIF5C	2	149840154	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	8746898	149840154	93359219	103	114438											
NEB	4703	broad.mit.edu	37	chr2	152487674	152487674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttattcatgttgagagCattgttcttggccagcacct	8	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152487674	A	A	152487674	1	1	126	0	1	0	0	0	0	0	0	0	10397	710	25	3		3	NEB	2	152487674	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2647520	152487674	90711699	104	114439											
C2orf77	129881	broad.mit.edu	37	chr2	170502572	170502572	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgtttccgattcaagttCaattacctctctggcatagt	7	9	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170502572	T	T	170502572	3	4	126	1	0	0	0	0	1	0	0	0	2216	835	29	4	224	4	C2orf77	2	170502572	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	18014898	170502572	72696801	105	114440											
METTL8	79828	broad.mit.edu	37	chr2	172195573	172195573	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgcacagaagtacactgAatgcttatttacatttgata	6	6	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172195573	G	G	172195573	1	3	126	0	1	0	0	0	0	0	0	0	9600	261	9	5		5	METTL8	2	172195573	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	1693001	172195573	71003800	106	114441											
ATP5G3	518	broad.mit.edu	37	chr2	176043042	176043042	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaacaaaatcaagaaagCaaccatcaaacaaaagagac	6	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176043042	G	G	176043042	3	3	126	1	0	0	0	0	1	0	0	0	1159	710	25	4	29	4	ATP5G3	2	176043042	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	3847469	176043042	67156331	107	114442											
PDE11A	50940	broad.mit.edu	37	chr2	178862859	178862859	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcagccaccaactttaCaagttgctgtcttccactta	5	13	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178862859	T	T	178862859	1	4	126	0	1	0	0	0	0	0	0	0	11725	493	17	4		4	PDE11A	2	178862859	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2819817	178862859	64336514	108	114443											
TTN	7273	broad.mit.edu	37	chr2	179588668	179588668	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccatatctgaggaatcCagagaattcaactgcaatgt	8	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179588668	A	A	179588668	2	1	126	1	0	0	0	0	0	0	0	1	16861	581	21	2		2	TTN	2	179588668	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	725809	179588668	63610705	109	114444											
ITGA4	3676	broad.mit.edu	37	chr2	182390004	182390004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttaaaatatgaggttaaGctgactgttcatgggtaagt	10	5	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182390004	T	T	182390004	3	4	126	1	0	0	0	0	1	0	0	0	7948	962	34	3	2407	3	ITGA4	2	182390004	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2801336	182390004	60809369	110	114445											
ZNF804A	91752	broad.mit.edu	37	chr2	185801850	185801850	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggacactctagatgaaaAatacaacaaaataaggttga	7	6	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185801850	C	C	185801850	3	2	126	1	0	0	0	0	1	0	0	0	18299	14	1	5	1741	5	ZNF804A	2	185801850	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	3411846	185801850	57397523	111	114446											
CALCRL	10203	broad.mit.edu	37	chr2	188216770	188216770	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atagctgtacaagtagtcagGagtaaaccaaagctatatgt	9	6	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188216770	T	T	188216770	1	4	126	0	1	0	0	0	0	0	0	0	2606	1189	41	3		3	CALCRL	2	188216770	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2414920	188216770	54982603	112	114447											
COL3A1	1281	broad.mit.edu	37	chr2	189859522	189859522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggatcacctggagaacctGgtgcaaatgggcttccagga	13	9	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189859522	T	T	189859522	3	4	126	1	0	0	0	0	1	0	0	0	3720	1348	47	2	1498	2	COL3A1	2	189859522	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1642752	189859522	53339851	113	114448											
COL3A1	1281	broad.mit.edu	37	chr2	189873907	189873907	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtaaaaaccccgctagaaaCtgcagagacctgaaattctg	8	11	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189873907	G	G	189873907	3	3	126	1	0	0	0	0	1	0	0	0	3720	564	20	4	3973	4	COL3A1	2	189873907	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	14385	189873907	53325466	114	114449											
ANKAR	150709	broad.mit.edu	37	chr2	190575913	190575913	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattaataactttttatgctAttttatgtagagctatattt	4	3	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190575913	T	T	190575913	1	4	126	0	1	0	0	0	0	0	0	0	623	464	16	5		5	ANKAR	2	190575913	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	702006	190575913	52623460	115	114450											
SF3B1	23451	broad.mit.edu	37	chr2	198265462	198265462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtctgttcttggaaagCataaagaataccatcaatca	7	7	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198265462	A	A	198265462	3	1	126	1	0	0	0	0	1	0	0	0	14262	710	25	3	1251	3	SF3B1	2	198265462	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	7689549	198265462	44933911	116	114451											
ALS2	57679	broad.mit.edu	37	chr2	202572578	202572578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttcttcactgtccccacCcaactccatttaccctggct	3	19	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202572578	A	A	202572578	1	1	126	0	1	0	0	0	0	0	0	0	550	638	22	2		2	ALS2	2	202572578	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4307116	202572578	40626795	117	114452											
ADAM23	8745	broad.mit.edu	37	chr2	207460798	207460798	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtaatgaagccacctgCatttgtgatttcacctgggc	10	9	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207460798	A	A	207460798	4	1	126	1	0	0	0	0	0	1	0	0	245	718	25	3	2365	3	ADAM23	2	207460798	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4888220	207460798	35738575	118	114453											
MDH1B	130752	broad.mit.edu	37	chr2	207630019	207630019	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagagagactcagaggcagGgaccgcggcttcgcggtttc	16	11	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207630019	T	T	207630019	1	4	126	0	1	0	0	0	0	0	0	0	9502	1247	43	2		2	MDH1B	2	207630019	5'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	169221	207630019	35569354	119	114454											
PIKFYVE	200576	broad.mit.edu	37	chr2	209142361	209142361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggcgcagacaccattgccGactatgtgggcagattttct	11	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209142361	T	T	209142361	3	4	126	1	0	0	0	0	1	0	0	0	12019	1058	37	3	556	3	PIKFYVE	2	209142361	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1512342	209142361	34057012	120	114455											
CPS1	1373	broad.mit.edu	37	chr2	211441261	211441261	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctcaatttgagggagtaTagttgacttattcttaagaa	9	4	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211441261	C	C	211441261	1	2	126	0	1	0	0	0	0	0	0	0	3855	1421	49	5		5	CPS1	2	211441261	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	2298900	211441261	31758112	121	114456											
CPS1	1373	broad.mit.edu	37	chr2	211513216	211513216	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaagcactggaatttgCaaagtctgtggactacccct	10	9	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211513216	T	T	211513216	3	4	126	1	0	0	0	0	1	0	0	0	3855	710	25	4	3484	4	CPS1	2	211513216	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	71955	211513216	31686157	122	114457											
OBSL1	23363	broad.mit.edu	37	chr2	220422763	220422763	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagttcacagctcagcaccActggctccccaggggccaca	9	17	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220422763	G	G	220422763	3	3	126	1	0	0	0	0	1	0	0	0	10908	159	6	5	2185	5	OBSL1	2	220422763	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	8909547	220422763	22776610	123	114458											
SCG2	7857	broad.mit.edu	37	chr2	224462975	224462975	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatagactgagaatcaagAggtttctcaaaaagcctggt	9	6	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224462975	T	T	224462975	2	4	126	1	0	0	0	0	0	0	0	1	14003	291	11	5		5	SCG2	2	224462975	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	4040212	224462975	18736398	124	114459											
COL4A4	1286	broad.mit.edu	37	chr2	227979203	227979203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacacaaaagcatgatgCcatccctgagggtcagggta	10	11	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227979203	A	A	227979203	1	1	126	0	1	0	0	0	0	0	0	0	3725	754	26	3		3	COL4A4	2	227979203	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3516228	227979203	15220170	125	114460											
MFF	56947	broad.mit.edu	37	chr2	228205013	228205013	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgccttaacagatccgAgcagttggcagactaaaaag	10	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228205013	T	T	228205013	2	4	126	1	0	0	0	0	0	0	0	1	9612	291	11	5		5	MFF	2	228205013	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	225810	228205013	14994360	126	114461											
ATG16L1	55054	broad.mit.edu	37	chr2	234200895	234200895	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctaaaagttattgatctcCgaacaaatgctatcaagcag	7	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234200895	T	T	234200895	4	4	126	1	0	0	0	0	0	1	0	0	1095	644	23	4	1610	4	ATG16L1	2	234200895	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	5995882	234200895	8998478	127	114462											
AGAP1	116987	broad.mit.edu	37	chr2	236706518	236706518	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcgcaggtgtctgccgtGcacatcagccaggtacgtta	12	13	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236706518	T	T	236706518	2	4	126	1	0	0	0	0	0	0	0	1	366	1306	46	3		3	AGAP1	2	236706518	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	2505623	236706518	6492855	128	114463											
CHL1	10752	broad.mit.edu	37	chr3	418224	418224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcatagtgcaaccatgaCttgccaaaaaaattggtagc	9	8	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	418224	T	T	418224	1	4	126	0	1	0	0	0	0	0	0	0	3380	580	20	4		4	CHL1	3	418224	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08		418224	197604206	129	114464											
FANCD2	2177	broad.mit.edu	37	chr3	10081090	10081090	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagagtatgtttctcatAtcttttggaggttgtatttt	8	3	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10081090	G	G	10081090	1	3	126	0	1	0	0	0	0	0	0	0	5722	464	16	5		5	FANCD2	3	10081090	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	9662866	10081090	187941340	130	114465											
SLC6A11	6538	broad.mit.edu	37	chr3	10971110	10971110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgaccagctgtgtgaccCgggtcaggtctagtgccctc	13	12	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10971110	A	A	10971110	1	1	126	0	1	0	0	0	0	0	0	0	14788	667	23	1		1	SLC6A11	3	10971110	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	890020	10971110	187051320	131	114466											
SYN2	6854	broad.mit.edu	37	chr3	12112161	12112161	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccaggccatgctgtccctCtatgcctctggatgcaccac	8	16	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12112161	A	A	12112161	1	1	126	0	1	0	0	0	0	0	0	0	15560	928	32	3		3	SYN2	3	12112161	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1141051	12112161	185910269	132	114467											
NUP210	23225	broad.mit.edu	37	chr3	13417095	13417095	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgggatgtgaatttccaccTcctgctggttccacacaggc	10	13	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13417095	A	A	13417095	3	1	126	1	0	0	0	0	1	0	0	0	10855	1551	54	5	4443	5	NUP210	3	13417095	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	1304934	13417095	184605335	133	114468											
CHCHD4	131474	broad.mit.edu	37	chr3	14163326	14163326	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagatacaactcccccaTacagaatcaagtgtctgtga	7	10	2	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14163326	A	A	14163326	1	1	126	0	1	0	0	0	0	0	0	0	3349	1421	49	5		5	CHCHD4	3	14163326	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	746231	14163326	183859104	134	114469											
GALNTL2	117248	broad.mit.edu	37	chr3	16268973	16268973	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcccgccagcagtggcGttttgaccagatcaatgctg	11	11	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16268973	A	A	16268973	3	1	126	1	0	0	0	0	1	0	0	0	6284	1145	40	4	1924	4	GALNTL2	3	16268973	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2105647	16268973	181753457	135	114470											
ZNF385D	79750	broad.mit.edu	37	chr3	21606170	21606170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattacagctttctgaatcgGgtccatctgtaatgagaaaa	8	7	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21606170	T	T	21606170	3	4	126	1	0	0	0	0	1	0	0	0	18004	1232	43	2	1039	2	ZNF385D	3	21606170	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	5337197	21606170	176416260	136	114471											
CYP8B1	1582	broad.mit.edu	37	chr3	42916116	42916116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgaagacggtgggctcaGggtggatgtcagggtccatg	17	7	2	2	rs141302264		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42916116	T	T	42916116	3	4	126	1	0	0	0	0	1	0	0	0	4231	1000	35	2	316	2	CYP8B1	3	42916116	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	21309946	42916116	155106314	137	114472											
KIF15	56992	broad.mit.edu	37	chr3	44867888	44867888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgatggagcttcttgagGcagaaaaagaacgcaataac	10	6	1	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44867888	T	T	44867888	3	4	126	1	0	0	0	0	1	0	0	0	8347	1203	42	3	2808	3	KIF15	3	44867888	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1951772	44867888	153154542	138	114473											
NBEAL2	23218	broad.mit.edu	37	chr3	47038686	47038686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttctgggtggtctgctGgggtggagtagggcaggaaa	18	6	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47038686	T	T	47038686	1	4	126	0	1	0	0	0	0	0	0	0	10283	1363	47	2		2	NBEAL2	3	47038686	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2170798	47038686	150983744	139	114474											
NBEAL2	23218	broad.mit.edu	37	chr3	47038945	47038945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtgttcctggtgcctatGttgtggagagggaatcttgg	15	5	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47038945	T	T	47038945	1	4	126	0	1	0	0	0	0	0	0	0	10283	1392	48	3		3	NBEAL2	3	47038945	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	259	47038945	150983485	140	114475											
FBXW12	285231	broad.mit.edu	37	chr3	48416855	48416855	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttctagcatttgagacgGagttggcttatctctcagga	10	9	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48416855	T	T	48416855	4	4	126	1	0	0	0	0	0	1	0	0	5822	1175	41	3	349	3	FBXW12	3	48416855	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1377910	48416855	149605575	141	114476											
WDR6	11180	broad.mit.edu	37	chr3	49044995	49044995	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttgaggcacgcctggtggAaagggggaaagaaacagcgc	17	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49044995	G	G	49044995	1	3	126	0	1	0	0	0	0	0	0	0	17437	261	9	5		5	WDR6	3	49044995	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	628140	49044995	148977435	142	114477											
BSN	8927	broad.mit.edu	37	chr3	49694474	49694474	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctagcggctgctgagttGgcccagaatggccagtattg	13	12	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49694474	A	A	49694474	2	1	126	1	0	0	0	0	0	0	0	1	1539	1339	47	4		4	BSN	3	49694474	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	649479	49694474	148327956	143	114478											
DNAH1	25981	broad.mit.edu	37	chr3	52406111	52406111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagaagcccgtgagcacCcccccaggccctgcctccac	8	20	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52406111	A	A	52406111	1	1	126	0	1	0	0	0	0	0	0	0	4637	638	22	2		2	DNAH1	3	52406111	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2711637	52406111	145616319	144	114479											
ITIH3	3699	broad.mit.edu	37	chr3	52836635	52836635	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtggtggcccctgaacctGatccacccaagcctccagcc	10	17	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52836635	T	T	52836635	1	4	126	0	1	0	0	0	0	0	0	0	7975	1305	45	3		3	ITIH3	3	52836635	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	430524	52836635	145185795	145	114480											
CACNA1D	776	broad.mit.edu	37	chr3	53752403	53752403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgagaaccgaggctgctGtggaagtctctggtgagtgt	17	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53752403	T	T	53752403	3	4	126	1	0	0	0	0	1	0	0	0	2567	1377	48	3	1612	3	CACNA1D	3	53752403	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	915768	53752403	144270027	146	114481											
WNT5A	7474	broad.mit.edu	37	chr3	55504432	55504433	+	Missense_Mutation	DNP	CC	AA	AA													aacttgccccggctgttgagCcgcatggccgccgcgctgtc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55504433	AA	AA	55504432	3	1	126	1	0	0	0	0	1	0	0	0	17518	726	26	3	315	3	WNT5A	3	55504432	Missense_Mutation	DNP	CC	TCGA-44-6774-01A-21D-1855-08	1752029	55504432	142517998	147	114482											
FLNB	2317	broad.mit.edu	37	chr3	58135961	58135961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaaaatcccaggtgggcGtcggggactagtagggtggg	18	8	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58135961	T	T	58135961	1	4	126	0	1	0	0	0	0	0	0	0	5992	1160	40	3		3	FLNB	3	58135961	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2631529	58135961	139886469	148	114483											
FAM55C	91775	broad.mit.edu	37	chr3	101520396	101520396	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattttcaaagaaagcccaaGaagtatggtggagactacct	10	7	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101520396	T	T	101520396	3	4	126	1	0	0	0	0	1	0	0	0	5637	933	33	3	417	3	FAM55C	3	101520396	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	43384435	101520396	96502034	149	114484											
ITGB5	3693	broad.mit.edu	37	chr3	124567122	124567123	+	Intron	INS	-	A	A													ttctccattctcccacccttINSaagtacccaacagaagggca							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124567123	A	A	124567122	6	5	126	0	1	1	1	0	0	0	0	0	7968	1769	61	0		0	ITGB5	3	124567122	Intron	INS	-	TCGA-44-6774-01A-21D-1855-08	23046726	124567122	73455308	150	114485											
ALDH1L1	10840	broad.mit.edu	37	chr3	125831612	125831612	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgcccgcagaccctgGggcaggacttaccactctcc	10	19	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125831612	T	T	125831612	1	4	126	0	1	0	0	0	0	0	0	0	494	1247	43	2		2	ALDH1L1	3	125831612	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1264490	125831612	72190818	151	114486											
C3orf27	23434	broad.mit.edu	37	chr3	128292497	128292497	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtccctggaggcgggagaCgctgagtctaggcaggctcg	19	10	1	2	rs141693917		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128292497	T	T	128292497	3	4	126	1	0	0	0	0	1	0	0	0	2241	536	19	4	377	4	C3orf27	3	128292497	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2460885	128292497	69729933	152	114487											
EPHB1	2047	broad.mit.edu	37	chr3	134959962	134959962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagaaacctgattgttgGgctgaccacggtttctcctt	9	10	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134959962	T	T	134959962	1	4	126	0	1	0	0	0	0	0	0	0	5216	1247	43	2		2	EPHB1	3	134959962	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	6667465	134959962	63062468	153	114488											
PCOLCE2	26577	broad.mit.edu	37	chr3	142567310	142567310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgactacttttccttcgGgaacctgccaagaaaagcgc	9	12	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142567310	T	T	142567310	3	4	126	1	0	0	0	0	1	0	0	0	11689	1232	43	2	1078	2	PCOLCE2	3	142567310	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	7607348	142567310	55455120	154	114489											
TM4SF1	4071	broad.mit.edu	37	chr3	149093324	149093324	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggctgccacaatgacacAgtagccagatcctgcaattc	9	12	0	2	rs140811683		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149093324	T	T	149093324	3	4	126	1	0	0	0	0	1	0	0	0	16089	188	7	5	301	5	TM4SF1	3	149093324	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	6526014	149093324	48929106	155	114490											
FAM194A	131831	broad.mit.edu	37	chr3	150421307	150421307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcgaggaggtgctggaggGtgggcttgcgctcggcgttt	20	7	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150421307	C	C	150421307	3	2	126	1	0	0	0	0	1	0	0	0	5573	1261	44	4	1668	4	FAM194A	3	150421307	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1327983	150421307	47601123	156	114491											
IGSF10	285313	broad.mit.edu	37	chr3	151176498	151176499	+	Splice_Site	DNP	CC	AT	AT													cctctgccttttaccttcatCctgaaaaaacatcatacctc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	151176499	AT	AT	151176498	5	1	126	1	0	0	0	0	0	0	1	0	7667	870	30	3	7943	3	IGSF10	3	151176498	Splice_Site	DNP	CC	TCGA-44-6774-01A-21D-1855-08	755191	151176498	46845932	157	114492											
GFM1	85476	broad.mit.edu	37	chr3	158376808	158376808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggacaagaaagaaagtacGgttgcaacggctggctcgca	13	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158376808	T	T	158376808	3	4	126	1	0	0	0	0	1	0	0	0	6405	1116	39	1	1215	1	GFM1	3	158376808	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	7200310	158376808	39645622	158	114493											
SKIL	6498	broad.mit.edu	37	chr3	170078605	170078605	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcaagttggaggagaAaagagactctgtttgcccca	11	7	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170078605	C	C	170078605	3	2	126	1	0	0	0	0	1	0	0	0	14471	11	1	5	488	5	SKIL	3	170078605	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	11701797	170078605	27943825	159	114494											
TNIK	23043	broad.mit.edu	37	chr3	170858245	170858245	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatctgctcctcatagtgCcggcgctgctccctctcctg	9	18	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170858245	A	A	170858245	2	1	126	1	0	0	0	0	0	0	0	1	16436	726	26	3		3	TNIK	3	170858245	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	779640	170858245	27164185	160	114495											
DVL3	1857	broad.mit.edu	37	chr3	183885372	183885372	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcccacccccaggcctAgacgacttccacttgtccat	6	19	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183885372	T	T	183885372	2	4	126	1	0	0	0	0	0	0	0	1	4877	407	15	5		5	DVL3	3	183885372	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	13027127	183885372	14137058	161	114496											
LRRC15	131578	broad.mit.edu	37	chr3	194080594	194080594	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttgttctgcagctggatGgccatgaggccattgacgtt	14	8	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194080594	T	T	194080594	2	4	126	1	0	0	0	0	0	0	0	1	9057	1335	47	2		2	LRRC15	3	194080594	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	10195222	194080594	3941836	162	114497											
PDE6B	5158	broad.mit.edu	37	chr4	647771	647771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggcctcctggacatgaCcaaggagaaggtgaggcttc	15	10	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	647771	A	A	647771	3	1	126	1	0	0	0	0	1	0	0	0	11740	507	18	3	856	3	PDE6B	4	647771	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08		647771	190506505	163	114498											
GAK	2580	broad.mit.edu	37	chr4	898293	898293	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgatgggcggctcctAaccgagcgggacccgcacac	15	13	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	898293	G	G	898293	1	3	126	0	1	0	0	0	0	0	0	0	6257	377	13	5		5	GAK	4	898293	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	250522	898293	190255983	164	114499											
KIAA1530	57654	broad.mit.edu	37	chr4	1343559	1343559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcaggcgaccacccggGccgtggaagggtggaatgag	19	9	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1343559	T	T	1343559	3	4	126	1	0	0	0	0	1	0	0	0	8311	1203	42	3	352	3	KIAA1530	4	1343559	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	445266	1343559	189810717	165	114500											
HAUS3	79441	broad.mit.edu	37	chr4	2238091	2238091	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcttgtactaaagaaataTtctgtttcaatttctcagcc	5	8	4	1	rs150101454		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2238091	C	C	2238091	3	2	126	1	0	0	0	0	1	0	0	0	7033	1493	52	5	377	5	HAUS3	4	2238091	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	894532	2238091	188916185	166	114501											
FAM193A	8603	broad.mit.edu	37	chr4	2661632	2661632	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccacattcaccagctcccActtcaagtggatcctgctcc	5	17	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2661632	T	T	2661632	2	4	126	1	0	0	0	0	0	0	0	1	5571	146	6	5		5	FAM193A	4	2661632	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	423541	2661632	188492644	167	114502											
LAP3	51056	broad.mit.edu	37	chr4	17597144	17597144	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaaagcttaatttgccCattaatattataggtaagtg	8	6	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17597144	A	A	17597144	2	1	126	1	0	0	0	0	0	0	0	1	8695	581	21	2		2	LAP3	4	17597144	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	14935512	17597144	173557132	168	114503											
SLIT2	9353	broad.mit.edu	37	chr4	20540984	20540984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgctacatatttgcaaGgatcatttcgatcctcagat	7	8	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20540984	T	T	20540984	1	4	126	0	1	0	0	0	0	0	0	0	14854	1015	35	2		2	SLIT2	4	20540984	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2943840	20540984	170613292	169	114504											
GBA3	57733	broad.mit.edu	37	chr4	22729405	22729405	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcctcttgccctgcagtatCaaaaagtccaagagtatatg	7	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22729405	A	A	22729405	1	1	126	0	1	0	0	0	0	0	0	0	6330	841	29	3		3	GBA3	4	22729405	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2188421	22729405	168424871	170	114505											
LRRC66	339977	broad.mit.edu	37	chr4	52860731	52860731	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcataagtgaacatgccCggaaactcatcccctaaggg	8	11	2	1	rs137931708	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52860731	A	A	52860731	2	1	126	1	0	0	0	0	0	0	0	1	9105	639	23	1		1	LRRC66	4	52860731	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	30131326	52860731	138293545	171	114506											
PDGFRA	5156	broad.mit.edu	37	chr4	54249936	54249936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataatttgtttatgttcatGtagaaagtgactgagaccga	9	4	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54249936	T	T	54249936	1	4	126	0	1	0	0	0	0	0	0	0	11755	1392	48	3		3	PDGFRA	4	54249936	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1389205	54249936	136904340	172	114507											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68829043	68829043	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctcttacacatcaggaatCcggccactgacagacagtac	7	14	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68829043	A	A	68829043	1	1	126	0	1	0	0	0	0	0	0	0	16362	870	30	3		3	TMPRSS11A	4	68829043	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	14579107	68829043	122325233	173	114508											
YTHDC1	91746	broad.mit.edu	37	chr4	69195782	69195782	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactcattcctgctggaagCacccagtgtataggagatcc	10	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69195782	A	A	69195782	2	1	126	1	0	0	0	0	0	0	0	1	17623	697	25	3		3	YTHDC1	4	69195782	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	366739	69195782	121958494	174	114509											
RUFY3	22902	broad.mit.edu	37	chr4	71644082	71644082	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttcttctctatattAtagtgctactgtaaacaacc	3	8	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71644082	G	G	71644082	1	3	126	0	1	0	0	0	0	0	0	0	13851	464	16	5		5	RUFY3	4	71644082	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2448300	71644082	119510194	175	114510											
AGPAT9	84803	broad.mit.edu	37	chr4	84509333	84509334	+	Intron	DNP	GG	TT	TT													ttcttaagagtgcccagaatGgcacaataaaatgtttctat							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	84509334	TT	TT	84509333	1	4	126	0	1	0	0	0	0	0	0	0	392	1363	47	2		2	AGPAT9	4	84509333	Intron	DNP	GG	TCGA-44-6774-01A-21D-1855-08	12865251	84509333	106644943	176	114511											
INTS12	57117	broad.mit.edu	37	chr4	106614705	106614705	+	Intron	DEL	G	-	-													agaataaactttaagtcactGaaagacgagtgagaaggaca							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	106614705	-	-	106614705	6	5	126	0	1	1	0	1	0	0	0	0	7847	1305	45	0		0	INTS12	4	106614705	Intron	DEL	G	TCGA-44-6774-01A-21D-1855-08	22105372	106614705	84539571	177	114512											
NDST3	9348	broad.mit.edu	37	chr4	119115342	119115342	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccagaccataaggcagatCcagattctcctgatgttcaa	7	12	2	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119115342	A	A	119115342	1	1	126	0	1	0	0	0	0	0	0	0	10352	870	30	3		3	NDST3	4	119115342	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	12500637	119115342	72038934	178	114513											
KIAA1109	84162	broad.mit.edu	37	chr4	123239240	123239240	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaattaaaaaggagcaagTaaaaaatcagtcttactttg	7	4	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123239240	G	G	123239240	1	3	126	0	1	0	0	0	0	0	0	0	8278	1653	57	5		5	KIAA1109	4	123239240	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	4123898	123239240	67915036	179	114514											
FAT4	79633	broad.mit.edu	37	chr4	126370833	126370833	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctgaacttactgagattGgctccaaagtaactcaggta	9	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126370833	C	C	126370833	3	2	126	1	0	0	0	0	1	0	0	0	5749	1348	47	4	8696	4	FAT4	4	126370833	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	3131593	126370833	64783443	180	114515											
PHF17	79960	broad.mit.edu	37	chr4	129753160	129753160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactgggtaaggttgactGcaggcaagcattcctgaggc	13	9	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129753160	T	T	129753160	1	4	126	0	1	0	0	0	0	0	0	0	11923	1334	46	3		3	PHF17	4	129753160	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3382327	129753160	61401116	181	114516											
PCDH18	54510	broad.mit.edu	37	chr4	138453002	138453002	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgatttccccattatcctCgtttactacaagtagaggag	8	10	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138453002	A	A	138453002	4	1	126	1	0	0	0	0	0	1	0	0	11607	893	31	3	3182	3	PCDH18	4	138453002	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	8699842	138453002	52701274	182	114517											
LRBA	987	broad.mit.edu	37	chr4	151789409	151789409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaacctccatgctctctGggcactggggagaatttcga	12	11	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151789409	T	T	151789409	3	4	126	1	0	0	0	0	1	0	0	0	9018	1348	47	2	6245	2	LRBA	4	151789409	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	13336407	151789409	39364867	183	114518											
LRBA	987	broad.mit.edu	37	chr4	151835258	151835258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttttcttttttttttttGtatccattaaccaaactctc	1	9	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151835258	T	T	151835258	1	4	126	0	1	0	0	0	0	0	0	0	9018	1392	48	3		3	LRBA	4	151835258	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	45849	151835258	39319018	184	114519											
TRIM2	23321	broad.mit.edu	37	chr4	154191528	154191528	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagccggccccccatgtcaGtggtctaggatggccagtga	13	13	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154191528	T	T	154191528	1	4	126	0	1	0	0	0	0	0	0	0	16618	1020	36	3		3	TRIM2	4	154191528	5'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	2356270	154191528	36962748	185	114520											
FGB	2244	broad.mit.edu	37	chr4	155490895	155490895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgggagaaaacaggacCatgaccattcacaacggcat	10	10	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155490895	A	A	155490895	2	1	126	1	0	0	0	0	0	0	0	1	5888	581	21	2		2	FGB	4	155490895	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	1299367	155490895	35663381	186	114521											
LRAT	9227	broad.mit.edu	37	chr4	155670176	155670176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattattcgtgatcagagaaGtgttcttgcttcagcagtct	9	7	4	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155670176	T	T	155670176	3	4	126	1	0	0	0	0	1	0	0	0	9017	1029	36	3	587	3	LRAT	4	155670176	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	179281	155670176	35484100	187	114522											
FSTL5	56884	broad.mit.edu	37	chr4	162380417	162380417	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagcttagcacccagacctGatcatgtgatttgtcatagt	8	11	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162380417	A	A	162380417	4	1	126	1	0	0	0	0	0	1	0	0	6140	1299	45	4	892	4	FSTL5	4	162380417	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	6710241	162380417	28773859	188	114523											
TLL1	7092	broad.mit.edu	37	chr4	166910706	166910706	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatatactcttgaagtgctAtaaatatttttggatcattt	5	4	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166910706	G	G	166910706	1	3	126	0	1	0	0	0	0	0	0	0	16068	464	16	5		5	TLL1	4	166910706	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	4530289	166910706	24243570	189	114524											
CLCN3	1182	broad.mit.edu	37	chr4	170627967	170627967	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaaaattctaataaaatGtaatgatgaggatcctgtcc	7	6	1	2	rs139541306	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170627967	C	C	170627967	1	2	126	0	1	0	0	0	0	0	0	0	3495	1392	48	4		4	CLCN3	4	170627967	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3717261	170627967	20526309	190	114525											
GALNTL6	442117	broad.mit.edu	37	chr4	172735945	172735945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggactcgagaaagccgGtgtgggatcgccttgggttt	18	8	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172735945	T	T	172735945	1	4	126	0	1	0	0	0	0	0	0	0	6287	1276	44	3		3	GALNTL6	4	172735945	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2107978	172735945	18418331	191	114526											
KIAA1712	80817	broad.mit.edu	37	chr4	175237375	175237375	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcctctggctatagtacAgcatcatcagattcaactcc	6	13	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175237375	C	C	175237375	2	2	126	1	0	0	0	0	0	0	0	1	8323	175	7	5		5	KIAA1712	4	175237375	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	2501430	175237375	15916901	192	114527											
ASB5	140458	broad.mit.edu	37	chr4	177142368	177142368	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaagctacatagagaggaGttcccaaatgaggaatttct	9	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177142368	A	A	177142368	3	1	126	1	0	0	0	0	1	0	0	0	1030	1029	36	4	393	4	ASB5	4	177142368	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1904993	177142368	14011908	193	114528											
TRIML2	205860	broad.mit.edu	37	chr4	189012705	189012705	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattgtagaatgatatctgcCcgtgttcgcagtcaaggaaa	10	8	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189012705	G	G	189012705	3	3	126	1	0	0	0	0	1	0	0	0	16676	623	22	4	181	4	TRIML2	4	189012705	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	11870337	189012705	2141571	194	114529											
PDCD6	10016	broad.mit.edu	37	chr5	290247	290247	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaggacctcttggctcagGagctgaagttctgaaatcat	13	8	4	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	290247	T	T	290247	1	4	126	0	1	0	0	0	0	0	0	0	11717	1189	41	3		3	PDCD6	5	290247	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08		290247	180625013	195	114530											
ADCY2	108	broad.mit.edu	37	chr5	7626142	7626142	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgttaagcaaataaaaaTgttactttggaaacagaagt	7	4	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7626142	C	C	7626142	1	2	126	0	1	0	0	0	0	0	0	0	294	1479	51	5		5	ADCY2	5	7626142	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	7335895	7626142	173289118	196	114531											
CTNND2	1501	broad.mit.edu	37	chr5	11397038	11397038	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagttgagggacacacctAcaaaaaaggcaggctggatc	11	9	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11397038	G	G	11397038	1	3	126	0	1	0	0	0	0	0	0	0	4054	406	14	5		5	CTNND2	5	11397038	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	3770896	11397038	169518222	197	114532											
DNAH5	1767	broad.mit.edu	37	chr5	13864666	13864666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtattccagcagcgggcaaCactcgctgaaatcatcaatg	9	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13864666	A	A	13864666	3	1	126	1	0	0	0	0	1	0	0	0	4644	478	17	3	9646	3	DNAH5	5	13864666	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2467628	13864666	167050594	198	114533											
MYO10	4651	broad.mit.edu	37	chr5	16672820	16672820	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcaaacttggctaagacatCagctacgacggttcgacttt	8	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16672820	A	A	16672820	3	1	126	1	0	0	0	0	1	0	0	0	10156	826	29	3	909	3	MYO10	5	16672820	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2808154	16672820	164242440	199	114534											
MYO10	4651	broad.mit.edu	37	chr5	16701144	16701144	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccccacagagcagcggtaGtcgggggaccactggctgcc	15	14	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16701144	C	C	16701144	3	2	126	1	0	0	0	0	1	0	0	0	10156	1020	36	4	2884	4	MYO10	5	16701144	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	28324	16701144	164214116	200	114535											
CDH18	1016	broad.mit.edu	37	chr5	19520859	19520859	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagaactctaatacccacTgtgacatggctcagcaaatc	6	13	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19520859	A	A	19520859	2	1	126	1	0	0	0	0	0	0	0	1	3133	1567	55	5		5	CDH18	5	19520859	Silent	SNP	T	TCGA-44-6774-01A-21D-1855-08	2819715	19520859	161394401	201	114536											
SLC45A2	51151	broad.mit.edu	37	chr5	33951520	33951520	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatatggtcctttttaaggtGatagtttttcctgacgtcca	8	7	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33951520	C	C	33951520	1	2	126	0	1	0	0	0	0	0	0	0	14755	1305	45	4		4	SLC45A2	5	33951520	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	14430661	33951520	146963740	202	114537											
SLC1A3	6507	broad.mit.edu	37	chr5	36608599	36608599	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagggagtccgtaaacGcacacttttggccaagaaga	11	11	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36608599	A	A	36608599	3	1	126	1	0	0	0	0	1	0	0	0	14546	1087	38	4	76	4	SLC1A3	5	36608599	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2657079	36608599	144306661	203	114538											
C5orf42	65250	broad.mit.edu	37	chr5	37115015	37115015	+	Intron	DEL	G	-	-													tgtctcaaaaaaaaaaaaaaGaaaattcagtattaagtcta							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37115015	-	-	37115015	6	5	126	0	1	1	0	1	0	0	0	0	2324	957	33	0		0	C5orf42	5	37115015	Intron	DEL	G	TCGA-44-6774-01A-21D-1855-08	506416	37115015	143800245	204	114539											
EGFLAM	133584	broad.mit.edu	37	chr5	38435117	38435117	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccttgtgtagacagattgtCatgatgggtctctaggctct	11	9	3	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38435117	A	A	38435117	1	1	126	0	1	0	0	0	0	0	0	0	5006	841	29	3		3	EGFLAM	5	38435117	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1320102	38435117	142480143	205	114540											
C7	730	broad.mit.edu	37	chr5	40979769	40979769	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcacttttcatttctcCttctcagcttttacgaacaa	3	12	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40979769	A	A	40979769	1	1	126	0	1	0	0	0	0	0	0	0	2400	696	24	2		2	C7	5	40979769	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2544652	40979769	139935491	206	114541											
PARP8	79668	broad.mit.edu	37	chr5	50124151	50124151	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtctgtttttttagtggctCacacattgaaaactggcact	8	9	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50124151	T	T	50124151	3	4	126	1	0	0	0	0	1	0	0	0	11559	838	29	4	2178	4	PARP8	5	50124151	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	9144382	50124151	130791109	207	114542											
PPWD1	23398	broad.mit.edu	37	chr5	64872631	64872631	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttaaattctcattgcatAtatagatagatgggttgata	7	3	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64872631	G	G	64872631	1	3	126	0	1	0	0	0	0	0	0	0	12515	464	16	5		5	PPWD1	5	64872631	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	14748480	64872631	116042629	208	114543											
RASGRF2	5924	broad.mit.edu	37	chr5	80409319	80409319	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgggaattcatttcacttGgctacaatctcttagccact	6	11	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80409319	C	C	80409319	1	2	126	0	1	0	0	0	0	0	0	0	13181	1363	47	4		4	RASGRF2	5	80409319	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	15536688	80409319	100505941	209	114544											
GPR98	84059	broad.mit.edu	37	chr5	90050833	90050833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttcagttacaaatagctcGagataaaggactacttgggg	10	7	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90050833	T	T	90050833	3	4	126	1	0	0	0	0	1	0	0	0	6787	1058	37	3	11629	3	GPR98	5	90050833	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	9641514	90050833	90864427	210	114545											
C5orf13	9315	broad.mit.edu	37	chr5	111091358	111091358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccttttaaaggtcagatGgggtgtagaacaatgaaggg	14	4	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111091358	T	T	111091358	1	4	126	0	1	0	0	0	0	0	0	0	2305	1363	47	2		2	C5orf13	5	111091358	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	21040525	111091358	69823902	211	114546											
CCDC112	153733	broad.mit.edu	37	chr5	114607173	114607173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttccaagcttcaactgCcaatttctgtttctttcttt	3	11	5	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114607173	A	A	114607173	3	1	126	1	0	0	0	0	1	0	0	0	2775	739	26	3	536	3	CCDC112	5	114607173	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	3515815	114607173	66308087	212	114547											
FTMT	94033	broad.mit.edu	37	chr5	121187648	121187648	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagtttccccacttccaagGaggcggcgctatgctgtcct	10	14	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121187648	T	T	121187648	1	4	126	0	1	0	0	0	0	0	0	0	6145	1189	41	3		3	FTMT	5	121187648	5'Flank	SNP	G	TCGA-44-6774-01A-21D-1855-08	6580475	121187648	59727612	213	114548											
SLC12A2	6558	broad.mit.edu	37	chr5	127446010	127446010	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgacttgactgactgttttAgaaaccatgggctgggtaag	12	7	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127446010	G	G	127446010	1	3	126	0	1	0	0	0	0	0	0	0	14496	435	15	5		5	SLC12A2	5	127446010	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	6258362	127446010	53469250	214	114549											
FBN2	2201	broad.mit.edu	37	chr5	127599408	127599408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagagcaaaaacgtgaaCaagtctggagtctcaagtgc	12	8	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127599408	A	A	127599408	1	1	126	0	1	0	0	0	0	0	0	0	5760	493	17	3		3	FBN2	5	127599408	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	153398	127599408	53315852	215	114550											
FBN2	2201	broad.mit.edu	37	chr5	127664436	127664436	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgaagcccatctcacactCgcagcgatatgcacccggga	10	14	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127664436	A	A	127664436	4	1	126	1	0	0	0	0	0	1	0	0	5760	893	31	3	4443	3	FBN2	5	127664436	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	65028	127664436	53250824	216	114551											
FBN2	2201	broad.mit.edu	37	chr5	127666379	127666379	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgggttccattagaacattCgtccagatctgcagaacaca	9	10	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127666379	G	G	127666379	3	3	126	1	0	0	0	0	1	0	0	0	5760	893	31	4	4639	4	FBN2	5	127666379	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1943	127666379	53248881	217	114552											
C5orf24	134553	broad.mit.edu	37	chr5	134190862	134190862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccgatctggtaagcgtgGccggccttcgggaaccacca	12	14	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134190862	T	T	134190862	3	4	126	1	0	0	0	0	1	0	0	0	2310	1203	42	3	274	3	C5orf24	5	134190862	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	6524483	134190862	46724398	218	114553											
LECT2	3950	broad.mit.edu	37	chr5	135288387	135288387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccaatttatagctcataCttgaagcagagttcttggaa	7	8	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135288387	A	A	135288387	1	1	126	0	1	0	0	0	0	0	0	0	8785	580	20	3		3	LECT2	5	135288387	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1097525	135288387	45626873	219	114554											
TRPC7	57113	broad.mit.edu	37	chr5	135567003	135567003	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaaaagcaatgtaaattaGatgaaggagagcaagcattt	10	3	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135567003	A	A	135567003	1	1	126	0	1	0	0	0	0	0	0	0	16709	957	33	4		4	TRPC7	5	135567003	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	278616	135567003	45348257	220	114555											
PCDHB7	56129	broad.mit.edu	37	chr5	140553068	140553068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcaccgctttagacggcGgctctcctccaagatcaggg	10	16	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140553068	T	T	140553068	3	4	126	1	0	0	0	0	1	0	0	0	11641	1116	39	1	654	1	PCDHB7	5	140553068	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	4986065	140553068	40362192	221	114556											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744069	140744069	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accttgggctggagccccagGagctggcggagcgcggagtc	18	12	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140744069	T	T	140744069	4	4	126	1	0	0	0	0	0	1	0	0	11651	1175	41	3	174	3	PCDHGA5	5	140744069	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	191001	140744069	40171191	222	114557											
FBXO38	81545	broad.mit.edu	37	chr5	147784396	147784396	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgtgcaggtaatggtacAcaattatggtggaattaaac	10	5	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147784396	G	G	147784396	1	3	126	0	1	0	0	0	0	0	0	0	5803	174	6	5		5	FBXO38	5	147784396	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	7040327	147784396	33130864	223	114558											
IL17B	27190	broad.mit.edu	37	chr5	148753957	148753957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcaggtgcagcccacaGcgatggtctccatgactgcg	13	12	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148753957	T	T	148753957	3	4	126	1	0	0	0	0	1	0	0	0	7705	971	34	3	28	3	IL17B	5	148753957	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	969561	148753957	32161303	224	114559											
ARSI	340075	broad.mit.edu	37	chr5	149676935	149676935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccagggcccccaagcacCcccattaaagtcaggatgag	11	15	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149676935	A	A	149676935	3	1	126	1	0	0	0	0	1	0	0	0	998	623	22	2	161	2	ARSI	5	149676935	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	922978	149676935	31238325	225	114560											
TIMD4	91937	broad.mit.edu	37	chr5	156346503	156346503	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtcttcgtcttcccttcCatgctgcacgtcattgagga	9	14	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156346503	A	A	156346503	4	1	126	1	0	0	0	0	0	1	0	0	16026	603	21	2	38	2	TIMD4	5	156346503	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	6669568	156346503	24568757	226	114561											
TIMD4	91937	broad.mit.edu	37	chr5	156351545	156351545	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagaagcaggcatttctaCccagtttcataggattagca	8	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156351545	T	T	156351545	1	4	126	0	1	0	0	0	0	0	0	0	16026	522	18	4		4	TIMD4	5	156351545	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5042	156351545	24563715	227	114562											
ADAM19	8728	broad.mit.edu	37	chr5	156849543	156849543	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagaaagatgtcttcccctCtttccaaacagctgagacag	7	13	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156849543	G	G	156849543	1	3	126	0	1	0	0	0	0	0	0	0	240	928	32	4		4	ADAM19	5	156849543	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	497998	156849543	24065717	228	114563											
STK10	6793	broad.mit.edu	37	chr5	171517130	171517130	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcctccttgattccccCacttcatgctgtagacagac	6	14	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171517130	A	A	171517130	1	1	126	0	1	0	0	0	0	0	0	0	15404	609	21	2		2	STK10	5	171517130	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	14667587	171517130	9398130	229	114564											
C5orf25	375484	broad.mit.edu	37	chr5	175716950	175716950	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggaagaaaacacctttgtAggtcccccacccgctacatc	8	14	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175716950	G	G	175716950	2	3	126	1	0	0	0	0	0	0	0	1	2311	435	15	5		5	C5orf25	5	175716950	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	4199820	175716950	5198310	230	114565											
EIF4E1B	253314	broad.mit.edu	37	chr5	176070283	176070283	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtaggcaggagcctgCgagtggaacacagccccttg	14	11	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176070283	T	T	176070283	1	4	126	0	1	0	0	0	0	0	0	0	5071	783	27	4		4	EIF4E1B	5	176070283	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	353333	176070283	4844977	231	114566											
BTNL8	79908	broad.mit.edu	37	chr5	180377609	180377609	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccagatccaaagtcccGcagcagccggccaaggtggc	11	16	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180377609	T	T	180377609	1	4	126	0	1	0	0	0	0	0	0	0	1577	1102	38	3		3	BTNL8	5	180377609	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	4307326	180377609	537651	232	114567											
F13A1	2162	broad.mit.edu	37	chr6	6152180	6152180	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaactacctgagtgccacgGacctaagagagagaatgcag	11	11	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6152180	T	T	6152180	2	4	126	1	0	0	0	0	0	0	0	1	5383	1161	41	3		3	F13A1	6	6152180	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08		6152180	164962887	233	114568											
RIOK1	83732	broad.mit.edu	37	chr6	7414582	7414582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcagggagaccatgccCgccccaagaaacacaccacg	10	15	0	3	rs56090491	byFrequency;by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7414582	A	A	7414582	3	1	126	1	0	0	0	0	1	0	0	0	13488	652	23	1	1617	1	RIOK1	6	7414582	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1262402	7414582	163700485	234	114569											
ELOVL2	54898	broad.mit.edu	37	chr6	10995243	10995243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacaaaataacttactttGtccacaaggtatccagttca	4	9	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10995243	T	T	10995243	3	4	126	1	0	0	0	0	1	0	0	0	5116	1386	48	3	404	3	ELOVL2	6	10995243	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	3580661	10995243	160119824	235	114570											
MBOAT1	154141	broad.mit.edu	37	chr6	20152873	20152873	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accagccgaaacaaaagatgAcaaaatagatgccaaaaatg	7	8	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20152873	T	T	20152873	3	4	126	1	0	0	0	0	1	0	0	0	9449	275	10	5	1308	5	MBOAT1	6	20152873	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	9157630	20152873	150962194	236	114571											
SLC17A4	10050	broad.mit.edu	37	chr6	25773866	25773866	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attatggcgtacacaccaacGtacatcagctcggtacttca	7	12	2	0	rs146741384		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25773866	C	C	25773866	2	2	126	1	0	0	0	0	0	0	0	1	14532	1132	40	4		4	SLC17A4	6	25773866	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	5620993	25773866	145341201	237	114572											
BTN2A2	10385	broad.mit.edu	37	chr6	26393509	26393509	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacctactgtttaaaatcagGataaccacattaagcccaat	4	10	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26393509	T	T	26393509	1	4	126	0	1	0	0	0	0	0	0	0	1571	1189	41	3		3	BTN2A2	6	26393509	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	619643	26393509	144721558	238	114573											
OR2B2	81697	broad.mit.edu	37	chr6	27879562	27879562	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagagcagggacttcaCagaagaagtgatccacttct	11	9	2	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27879562	G	G	27879562	3	3	126	1	0	0	0	0	1	0	0	0	11083	478	17	4	541	4	OR2B2	6	27879562	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1486053	27879562	143235505	239	114574											
TRIM10	10107	broad.mit.edu	37	chr6	30121906	30121906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagacaccctcacctgcCggggctgctccttcagggtc	11	16	2	1	rs137941157	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30121906	A	A	30121906	3	1	126	1	0	0	0	0	1	0	0	0	16610	652	23	1	251	1	TRIM10	6	30121906	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2242344	30121906	140993161	240	114575											
TNXB	7148	broad.mit.edu	37	chr6	32035686	32035686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgtcactgttagctccCccaggagcggctcctcagcg	10	16	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32035686	A	A	32035686	3	1	126	1	0	0	0	0	1	0	0	0	16469	623	22	2	8525	2	TNXB	6	32035686	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1913780	32035686	139079381	241	114576											
PPT2	9374	broad.mit.edu	37	chr6	32130594	32130594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttgaaggtttatctgcGggattcttttgggttgaaga	12	6	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32130594	T	T	32130594	3	4	126	1	0	0	0	0	1	0	0	0	12513	1116	39	1	828	1	PPT2	6	32130594	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	94908	32130594	138984473	242	114577											
C6orf10	10665	broad.mit.edu	37	chr6	32267550	32267550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaaagtggagggcgGgggggaaccttggaagtttc	17	4	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32267550	T	T	32267550	1	4	126	0	1	0	0	0	0	0	0	0	2340	1247	43	2		2	C6orf10	6	32267550	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	136956	32267550	138847517	243	114578											
C6orf10	10665	broad.mit.edu	37	chr6	32339549	32339549	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcagagagagatcaaggTaaaacgaaaaactcaagttc	9	6	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32339549	G	G	32339549	1	3	126	0	1	0	0	0	0	0	0	0	2340	1653	57	5		5	C6orf10	6	32339549	5'UTR	SNP	T	TCGA-44-6774-01A-21D-1855-08	71999	32339549	138775518	244	114579											
HLA-DRB5	3127	broad.mit.edu	37	chr6	32497857	32497858	+	Intron	INS	-	A	A													atgttaacaaaactccctatINStttccccaccccatagtagc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32497858	A	A	32497857	6	5	126	0	1	1	1	0	0	0	0	0	7276	1508	52	0		0	HLA-DRB5	6	32497857	Intron	INS	-	TCGA-44-6774-01A-21D-1855-08	158308	32497857	138617210	245	114580											
WDR46	9277	broad.mit.edu	37	chr6	33256835	33256835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacgccccgccccccgaCcccacagctaaaaacttcgt	5	21	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33256835	A	A	33256835	1	1	126	0	1	0	0	0	0	0	0	0	17426	522	18	3		3	WDR46	6	33256835	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	758978	33256835	137858232	246	114581											
IP6K3	117283	broad.mit.edu	37	chr6	33690860	33690860	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctccggaggtggcttccAttatgtaggaactgatagag	12	9	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33690860	G	G	33690860	2	3	126	1	0	0	0	0	0	0	0	1	7860	214	8	5		5	IP6K3	6	33690860	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	434025	33690860	137424207	247	114582											
BRPF3	27154	broad.mit.edu	37	chr6	36182221	36182221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttctgctttgccttgCcaaccagcaccttccccaat	5	16	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36182221	T	T	36182221	1	4	126	0	1	0	0	0	0	0	0	0	1530	754	26	4		4	BRPF3	6	36182221	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2491361	36182221	134932846	248	114583											
BRPF3	27154	broad.mit.edu	37	chr6	36196766	36196766	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggacgtgctgaagctgggaGagcagaaacaggcagaggct	17	7	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36196766	T	T	36196766	4	4	126	1	0	0	0	0	0	1	0	0	1530	943	33	3	3409	3	BRPF3	6	36196766	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	14545	36196766	134918301	249	114584											
PI16	221476	broad.mit.edu	37	chr6	36930861	36930861	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctttcttggtaacagaggTctcaggctccctggcaacca	11	12	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36930861	A	A	36930861	3	1	126	1	0	0	0	0	1	0	0	0	11964	1667	58	5	761	5	PI16	6	36930861	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	734095	36930861	134184206	250	114585											
DNAH8	1769	broad.mit.edu	37	chr6	38905924	38905924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcctctacttcctcatcaCagagatgagcatggtcaaca	6	13	4	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38905924	T	T	38905924	3	4	126	1	0	0	0	0	1	0	0	0	4647	478	17	4	11381	4	DNAH8	6	38905924	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1975063	38905924	132209143	251	114586											
GLP1R	2740	broad.mit.edu	37	chr6	39047364	39047364	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaagtccacgctgacactCatccccctgctggggactca	9	17	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39047364	A	A	39047364	2	1	126	1	0	0	0	0	0	0	0	1	6516	813	29	3		3	GLP1R	6	39047364	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	141440	39047364	132067703	252	114587											
FOXP4	116113	broad.mit.edu	37	chr6	41533765	41533765	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcactaggctgcattccacTtcatcctggctgctggagca	11	13	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41533765	C	C	41533765	1	2	126	0	1	0	0	0	0	0	0	0	6089	1624	56	5		5	FOXP4	6	41533765	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	2486401	41533765	129581302	253	114588											
C6orf153	88745	broad.mit.edu	37	chr6	42989269	42989269	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcccggctccctggccCtcgaccgcgcagttttctgc	12	17	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42989269	A	A	42989269	1	1	126	0	1	0	0	0	0	0	0	0	2361	696	24	2		2	C6orf153	6	42989269	5'Flank	SNP	C	TCGA-44-6774-01A-21D-1855-08	1455504	42989269	128125798	254	114589											
TFAP2D	83741	broad.mit.edu	37	chr6	50696930	50696931	+	Missense_Mutation	DNP	GC	CA	CA													aaaatcaaagaatgggggccGctgcctgagagagaaattgg							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	50696931	CA	CA	50696930	3	2	126	1	0	0	0	0	1	0	0	0	15913	1087	38	4	806	4	TFAP2D	6	50696930	Missense_Mutation	DNP	GC	TCGA-44-6774-01A-21D-1855-08	7707661	50696930	120418137	255	114590											
HCRTR2	3062	broad.mit.edu	37	chr6	55113436	55113436	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctttttcttttcaaattaGtttgtgtggcagtgtggaag	10	5	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55113436	A	A	55113436	5	1	126	1	0	0	0	0	0	0	1	0	7069	1043	36	4	229	4	HCRTR2	6	55113436	Splice_Site	SNP	G	TCGA-44-6774-01A-21D-1855-08	4416506	55113436	116001631	256	114591											
HMGCLL1	54511	broad.mit.edu	37	chr6	55381282	55381282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataagaggcctatcaatttTagagatattagtagcacact	8	6	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55381282	C	C	55381282	1	2	126	0	1	0	0	0	0	0	0	0	7297	1769	61	5		5	HMGCLL1	6	55381282	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	267846	55381282	115733785	257	114592											
BAI3	577	broad.mit.edu	37	chr6	69945061	69945061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatagacctgaaatgcaatGcttagttgttcatagttaaa	8	5	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69945061	T	T	69945061	1	4	126	0	1	0	0	0	0	0	0	0	1305	1334	46	3		3	BAI3	6	69945061	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	14563779	69945061	101170006	258	114593											
COL9A1	1297	broad.mit.edu	37	chr6	70970395	70970395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaactatgccggtgatgcCtcgcaaaccctgggctccct	9	17	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70970395	A	A	70970395	3	1	126	1	0	0	0	0	1	0	0	0	3739	681	24	2	1427	2	COL9A1	6	70970395	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1025334	70970395	100144672	259	114594											
LCA5	167691	broad.mit.edu	37	chr6	80198966	80198966	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaatgcaagttcacaAattatagaaaagggggggaa	10	3	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80198966	T	T	80198966	1	4	126	0	1	0	0	0	0	0	0	0	8728	29	1	5		5	LCA5	6	80198966	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	9228571	80198966	90916101	260	114595											
CGA	1081	broad.mit.edu	37	chr6	87795867	87795867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaatgctcgacagaggctGggtcattagacacctttggc	11	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87795867	T	T	87795867	1	4	126	0	1	0	0	0	0	0	0	0	3325	1363	47	2		2	CGA	6	87795867	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	7596901	87795867	83319200	261	114596											
MDN1	23195	broad.mit.edu	37	chr6	90428642	90428642	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accatccagctcatctgcacAcacttcatgattgactccag	5	15	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90428642	T	T	90428642	4	4	126	1	0	0	0	0	0	1	0	0	9508	157	6	5	10869	5	MDN1	6	90428642	Nonsense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	2632775	90428642	80686425	262	114597											
MCHR2	84539	broad.mit.edu	37	chr6	100369158	100369158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaacattcagatagacaGggtataaacaaccatagaaa	8	6	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100369158	T	T	100369158	1	4	126	0	1	0	0	0	0	0	0	0	9476	1015	35	2		2	MCHR2	6	100369158	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	9940516	100369158	70745909	263	114598											
WASF1	8936	broad.mit.edu	37	chr6	110428447	110428447	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattagtaagacttaggcaaTcagaatagaaataatttcac	6	6	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110428447	A	A	110428447	1	1	126	0	1	0	0	0	0	0	0	0	17379	1450	50	5		5	WASF1	6	110428447	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	10059289	110428447	60686620	264	114599											
LAMA4	3910	broad.mit.edu	37	chr6	112465910	112465910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatacagcagaaaggtccAggctctggaagctgcccaag	12	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112465910	T	T	112465910	1	4	126	0	1	0	0	0	0	0	0	0	8680	203	7	5		5	LAMA4	6	112465910	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2037463	112465910	58649157	265	114600											
GPRC6A	222545	broad.mit.edu	37	chr6	117130516	117130516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacatcctggagacagcCatagttatttctgagtaccc	7	11	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117130516	A	A	117130516	3	1	126	1	0	0	0	0	1	0	0	0	6794	594	21	2	2341	2	GPRC6A	6	117130516	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4664606	117130516	53984551	266	114601											
PTPRK	5796	broad.mit.edu	37	chr6	128562422	128562422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttagaacatgaactaaagCagcagttctcaatttacgaa	7	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128562422	A	A	128562422	1	1	126	0	1	0	0	0	0	0	0	0	12913	725	25	3		3	PTPRK	6	128562422	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	11431906	128562422	42552645	267	114602											
LAMA2	3908	broad.mit.edu	37	chr6	129480208	129480208	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagattctgtccttgaacacGagaaatgatgaacaaatagg	9	7	1	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129480208	T	T	129480208	1	4	126	0	1	0	0	0	0	0	0	0	8678	1073	37	3		3	LAMA2	6	129480208	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	917786	129480208	41634859	268	114603											
MOXD1	26002	broad.mit.edu	37	chr6	132645261	132645261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaagcacataattaaaGtgatttttggttcttaaaat	5	4	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132645261	T	T	132645261	1	4	126	0	1	0	0	0	0	0	0	0	9814	1044	36	3		3	MOXD1	6	132645261	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3165053	132645261	38469806	269	114604											
TAAR5	9038	broad.mit.edu	37	chr6	132910380	132910380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtacctgagagccaccCtcactgtgaacttggaggga	13	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132910380	A	A	132910380	3	1	126	1	0	0	0	0	1	0	0	0	15610	681	24	2	571	2	TAAR5	6	132910380	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	265119	132910380	38204687	270	114605											
ALDH8A1	64577	broad.mit.edu	37	chr6	135239767	135239767	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacggtagccgccagcccaTacttaacgttgttggctctt	9	13	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135239767	C	C	135239767	3	2	126	1	0	0	0	0	1	0	0	0	505	1406	49	5	217	5	ALDH8A1	6	135239767	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	2329387	135239767	35875300	271	114606											
AKAP12	9590	broad.mit.edu	37	chr6	151673210	151673210	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaccttccagttttgtGttccaggaagaaactaaaga	8	10	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151673210	C	C	151673210	2	2	126	1	0	0	0	0	0	0	0	1	448	1364	48	4		4	AKAP12	6	151673210	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	16433443	151673210	19441857	272	114607											
ZBTB2	57621	broad.mit.edu	37	chr6	151687533	151687533	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcatcggaggaagatgctTccagattggtctcctccccg	11	13	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151687533	C	C	151687533	3	2	126	1	0	0	0	0	1	0	0	0	17654	1783	62	5	880	5	ZBTB2	6	151687533	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	14323	151687533	19427534	273	114608											
PNLDC1	154197	broad.mit.edu	37	chr6	160222274	160222274	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtatttttattgtccttgGatttcctactgtaaaaacag	7	6	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160222274	T	T	160222274	1	4	126	0	1	0	0	0	0	0	0	0	12243	1189	41	3		3	PNLDC1	6	160222274	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	8534741	160222274	10892793	274	114609											
THBS2	7058	broad.mit.edu	37	chr6	169642065	169642065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatctcagctgagggcaagCgtagaagggccgtgagcatc	15	9	1	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169642065	A	A	169642065	1	1	126	0	1	0	0	0	0	0	0	0	15977	783	27	3		3	THBS2	6	169642065	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	9419791	169642065	1473002	275	114610											
GLCCI1	113263	broad.mit.edu	37	chr7	8095229	8095229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattacttttagttcattaaGgaagggaattcatcatttca	6	5	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8095229	T	T	8095229	1	4	126	0	1	0	0	0	0	0	0	0	6495	1015	35	2		2	GLCCI1	7	8095229	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08		8095229	151043434	276	114611											
TMEM196	256130	broad.mit.edu	37	chr7	19765251	19765251	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagagagagtgcagcccccGatcccaatgcacgcgagaga	13	12	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19765251	T	T	19765251	2	4	126	1	0	0	0	0	0	0	0	1	16241	1048	37	3		3	TMEM196	7	19765251	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	11670022	19765251	139373412	277	114612											
OSBPL3	26031	broad.mit.edu	37	chr7	24854888	24854888	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagcaaatgcaaacaaactCtgctcttttataaaataagt	5	8	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24854888	A	A	24854888	1	1	126	0	1	0	0	0	0	0	0	0	11373	928	32	3		3	OSBPL3	7	24854888	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5089637	24854888	134283775	278	114613											
GARS	2617	broad.mit.edu	37	chr7	30661854	30661854	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctggcatggttttaagttGatgattgattgttctcaggc	12	5	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30661854	C	C	30661854	1	2	126	0	1	0	0	0	0	0	0	0	6304	1305	45	4		4	GARS	7	30661854	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	5806966	30661854	128476809	279	114614											
INMT	11185	broad.mit.edu	37	chr7	30793517	30793517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggggcctatgactggaccCcagcggtgaaattcgcctgt	14	12	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30793517	A	A	30793517	3	1	126	1	0	0	0	0	1	0	0	0	7815	623	22	2	331	2	INMT	7	30793517	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	131663	30793517	128345146	280	114615											
INHBA	3624	broad.mit.edu	37	chr7	41730102	41730103	+	Missense_Mutation	DNP	CC	TA	TA													cactgacaggtcactgccttCcttggaaatctcgaagtgca							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	41730103	TA	TA	41730102	3	4	126	1	0	0	0	0	1	0	0	0	7811	864	30	4	857	4	INHBA	7	41730102	Missense_Mutation	DNP	CC	TCGA-44-6774-01A-21D-1855-08	10936585	41730102	117408561	281	114616											
DBNL	28988	broad.mit.edu	37	chr7	44096269	44096269	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcctgtgtggtatagtAgtggcccgtgctgtatggac	14	9	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44096269	G	G	44096269	1	3	126	0	1	0	0	0	0	0	0	0	4288	435	15	5		5	DBNL	7	44096269	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2366167	44096269	115042394	282	114617											
GCK	2645	broad.mit.edu	37	chr7	44228635	44228635	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatatccaaggcttctcCgccgcaggggtcacggcccg	13	14	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44228635	A	A	44228635	1	1	126	0	1	0	0	0	0	0	0	0	6355	667	23	1		1	GCK	7	44228635	5'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	132366	44228635	114910028	283	114618											
DDC	1644	broad.mit.edu	37	chr7	50544321	50544321	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtggaatctcccacttaCccggtagtcagtgataagcc	9	12	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50544321	A	A	50544321	5	1	126	1	0	0	0	0	0	0	1	0	4358	521	18	3	416	3	DDC	7	50544321	Splice_Site	SNP	C	TCGA-44-6774-01A-21D-1855-08	6315686	50544321	108594342	284	114619											
POM121L12	285877	broad.mit.edu	37	chr7	53103500	53103500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgccccagaccacgccatctCcccagggtcgccagagtccc	9	21	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103500	A	A	53103500	3	1	126	1	0	0	0	0	1	0	0	0	12336	855	30	3	138	3	POM121L12	7	53103500	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2559179	53103500	106035163	285	114620											
TYW1	55253	broad.mit.edu	37	chr7	66482836	66482836	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctatctatcttttcctcAcaggttggcaaaaatgttga	7	9	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66482836	G	G	66482836	1	3	126	0	1	0	0	0	0	0	0	0	16944	174	6	5		5	TYW1	7	66482836	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	13379336	66482836	92655827	286	114621											
DTX2	113878	broad.mit.edu	37	chr7	76112318	76112318	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaccctcactctccggGgcccggtctgcgcccaggct	10	18	3	0	rs146537218	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76112318	T	T	76112318	2	4	126	1	0	0	0	0	0	0	0	1	4834	1219	43	2		2	DTX2	7	76112318	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	9629482	76112318	83026345	287	114622											
HGF	3082	broad.mit.edu	37	chr7	81336685	81336685	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagatatgtttatttctgtGaaaaagaggaaagagaaaca	10	3	1	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81336685	C	C	81336685	1	2	126	0	1	0	0	0	0	0	0	0	7152	1305	45	4		4	HGF	7	81336685	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	5224367	81336685	77801978	288	114623											
ABCB1	5243	broad.mit.edu	37	chr7	87151342	87151342	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagcaagagatggtgagtGcttcatccagccaaagaggc	12	9	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87151342	A	A	87151342	1	1	126	0	1	0	0	0	0	0	0	0	40	1334	46	4		4	ABCB1	7	87151342	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	5814657	87151342	71987321	289	114624											
COL1A2	1278	broad.mit.edu	37	chr7	94044451	94044451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactgccaggtttatttcacTctttccaaatttttcaaata	3	9	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94044451	A	A	94044451	1	1	126	0	1	0	0	0	0	0	0	0	3710	1566	54	5		5	COL1A2	7	94044451	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	6893109	94044451	65094212	290	114625											
PDK4	5166	broad.mit.edu	37	chr7	95216781	95216781	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgttggtgcagtggagtaTgtataactaaagaggcggtc	16	5	0	1	rs148379762		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95216781	C	C	95216781	2	2	126	1	0	0	0	0	0	0	0	1	11772	1451	51	5		5	PDK4	7	95216781	Silent	SNP	T	TCGA-44-6774-01A-21D-1855-08	1172330	95216781	63921882	291	114626											
LMTK2	22853	broad.mit.edu	37	chr7	97822738	97822738	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacagcttgtcagcacccttCccagcctctgagccgtccct	8	18	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97822738	G	G	97822738	3	3	126	1	0	0	0	0	1	0	0	0	8933	854	30	4	3003	4	LMTK2	7	97822738	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2605957	97822738	61315925	292	114627											
SRRT	51593	broad.mit.edu	37	chr7	100485189	100485189	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaggtggggttgagacAggaagccccctgggcagggg	22	7	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100485189	T	T	100485189	1	4	126	0	1	0	0	0	0	0	0	0	15290	203	7	5		5	SRRT	7	100485189	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2662451	100485189	58653474	293	114628											
ORAI2	80228	broad.mit.edu	37	chr7	102079390	102079390	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtctctctcccacccttaGcctggctcccaccatgagtg	7	17	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102079390	T	T	102079390	5	4	126	1	0	0	0	0	0	0	1	0	11352	985	34	3		3	ORAI2	7	102079390	Splice_Site	SNP	G	TCGA-44-6774-01A-21D-1855-08	1594201	102079390	57059273	294	114629											
FBXL13	222235	broad.mit.edu	37	chr7	102517943	102517943	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgtctgttccagagagatCtattgataccaaggaaaaga	10	6	2	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102517943	A	A	102517943	3	1	126	1	0	0	0	0	1	0	0	0	5766	913	32	3	621	3	FBXL13	7	102517943	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	438553	102517943	56620720	295	114630											
C7orf58	79974	broad.mit.edu	37	chr7	120782149	120782149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctatagagaagaccgccCaagtctgcccttgtttgagg	10	11	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120782149	A	A	120782149	3	1	126	1	0	0	0	0	1	0	0	0	2430	594	21	2	2067	2	C7orf58	7	120782149	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	18264206	120782149	38356514	296	114631											
POT1	25913	broad.mit.edu	37	chr7	124475445	124475445	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaaacttgttcgagagttTgcaaatttcactgagtgtac	8	6	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124475445	A	A	124475445	4	1	126	1	0	0	0	0	0	1	0	0	12355	1821	63	5	531	5	POT1	7	124475445	Nonsense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	3693296	124475445	34663218	297	114632											
POT1	25913	broad.mit.edu	37	chr7	124503323	124503323	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atacacagcatgctttatctCatcagaatgctgaaacataa	5	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124503323	A	A	124503323	1	1	126	0	1	0	0	0	0	0	0	0	12355	841	29	3		3	POT1	7	124503323	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	27878	124503323	34635340	298	114633											
ZNF800	168850	broad.mit.edu	37	chr7	127014765	127014765	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcgactcctgaggttgttCatcagatgtaggtgcaactt	11	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127014765	A	A	127014765	4	1	126	1	0	0	0	0	0	1	0	0	18298	835	29	3	1377	3	ZNF800	7	127014765	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2511442	127014765	32123898	299	114634											
DGKI	9162	broad.mit.edu	37	chr7	137406757	137406757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggtgaaaaagttgagaagCcagatactaaagagaagaaa	12	4	0	5	rs77130065		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137406757	T	T	137406757	1	4	126	0	1	0	0	0	0	0	0	0	4511	754	26	4		4	DGKI	7	137406757	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	10391992	137406757	21731906	300	114635											
HIPK2	28996	broad.mit.edu	37	chr7	139416353	139416353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcagtggcgacagtggCcccgcttgcattattctgaa	14	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139416353	A	A	139416353	3	1	126	1	0	0	0	0	1	0	0	0	7184	739	26	3	3171	3	HIPK2	7	139416353	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2009596	139416353	19722310	301	114636											
SLC37A3	84255	broad.mit.edu	37	chr7	140055426	140055427	+	Intron	DEL	AG	-	-													agcaatacacatgtgcacacAgagagagagagagagcacca							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140055427	-	-	140055426	6	5	126	0	1	1	0	1	0	0	0	0	14713	203	7	0		0	SLC37A3	7	140055426	Intron	DEL	AG	TCGA-44-6774-01A-21D-1855-08	639073	140055426	19083237	302	114637											
BRAF	673	broad.mit.edu	37	chr7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttcatgaagaaatataTctgaggtgtagtaagtaaag	11	3	3	3	rs121913370		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140453193	C	C	140453193	3	2	126	1	0	0	0	0	1	0	0	0	1505	1449	50	5	574	5	BRAF	7	140453193	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	397767	140453193	18685470	303	114638											
TRPV5	56302	broad.mit.edu	37	chr7	142626249	142626249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatccatggcaggagaacGcaggatggcaggatggggtg	19	6	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142626249	T	T	142626249	1	4	126	0	1	0	0	0	0	0	0	0	16724	1102	38	3		3	TRPV5	7	142626249	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2173056	142626249	16512414	304	114639											
TAS2R60	338398	broad.mit.edu	37	chr7	143140666	143140666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatggcttcatcactgctGctctgggcgtggagtgggtg	16	9	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143140666	T	T	143140666	3	4	126	1	0	0	0	0	1	0	0	0	15704	1319	46	3	123	3	TAS2R60	7	143140666	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	514417	143140666	15997997	305	114640											
TPK1	27010	broad.mit.edu	37	chr7	144380159	144380159	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactaaaaagcaggcactcaGacgcacagagtcacgctaac	8	13	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144380159	C	C	144380159	1	2	126	0	1	0	0	0	0	0	0	0	16528	957	33	4		4	TPK1	7	144380159	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1239493	144380159	14758504	306	114641											
EZH2	2146	broad.mit.edu	37	chr7	148525874	148525874	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttctgcttttcttctctttCttcaggatcgtctccatcat	4	12	7	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148525874	A	A	148525874	4	1	126	1	0	0	0	0	0	1	0	0	5377	922	32	3	1732	3	EZH2	7	148525874	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4145715	148525874	10612789	307	114642											
KCNH2	3757	broad.mit.edu	37	chr7	150644045	150644045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtggggccaggccccgGggtggtcacagcactgtagg	19	10	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150644045	T	T	150644045	3	4	126	1	0	0	0	0	1	0	0	0	8102	1232	43	2	237	2	KCNH2	7	150644045	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2118171	150644045	8494618	308	114643											
PTPRN2	5799	broad.mit.edu	37	chr7	157369309	157369309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgcgcgtcatacctgcGgaagtccaggagggaccttg	16	12	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157369309	T	T	157369309	3	4	126	1	0	0	0	0	1	0	0	0	12916	1116	39	1	288	1	PTPRN2	7	157369309	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	6725264	157369309	1769354	309	114644											
PTPRN2	5799	broad.mit.edu	37	chr7	157959945	157959945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcgcagacgtgtgggcCacataggtcaggatgctctc	14	11	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157959945	A	A	157959945	2	1	126	1	0	0	0	0	0	0	0	1	12916	581	21	2		2	PTPRN2	7	157959945	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	590636	157959945	1178718	310	114645											
CSMD1	64478	broad.mit.edu	37	chr8	3076867	3076867	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccgctactctctattctttCtggggcctgagagccctggt	10	13	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3076867	G	G	3076867	3	3	126	1	0	0	0	0	1	0	0	0	3978	922	32	4	6280	4	CSMD1	8	3076867	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08		3076867	143287155	311	114646											
CSMD1	64478	broad.mit.edu	37	chr8	3265539	3265539	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgccagaaaaagtaccCaggacagttatgtcagaaat	8	8	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3265539	A	A	3265539	2	1	126	1	0	0	0	0	0	0	0	1	3978	581	21	2		2	CSMD1	8	3265539	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	188672	3265539	143098483	312	114647											
CSMD1	64478	broad.mit.edu	37	chr8	4646135	4646135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgccattgaaatttttagGggaaaaactacaaatttcta	6	5	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4646135	T	T	4646135	1	4	126	0	1	0	0	0	0	0	0	0	3978	1247	43	2		2	CSMD1	8	4646135	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1380596	4646135	141717887	313	114648											
RP1L1	94137	broad.mit.edu	37	chr8	10473896	10473896	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctggaaggctttccactcAgccctactgaaccaccatgc	7	16	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10473896	T	T	10473896	1	4	126	0	1	0	0	0	0	0	0	0	13644	203	7	5		5	RP1L1	8	10473896	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	5827761	10473896	135890126	314	114649											
BLK	640	broad.mit.edu	37	chr8	11414294	11414294	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcggctggtccgactctaCgcagtggtcaccaaggagcc	14	13	2	0	rs139994406	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11414294	T	T	11414294	2	4	126	1	0	0	0	0	0	0	0	1	1450	547	19	4		4	BLK	8	11414294	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	940398	11414294	134949728	315	114650											
TNFRSF10D	8793	broad.mit.edu	37	chr8	22995579	22995579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatcagcacaggatcgacaTggggccccctgcttccagca	11	15	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22995579	A	A	22995579	1	1	126	0	1	0	0	0	0	0	0	0	16406	1479	51	5		5	TNFRSF10D	8	22995579	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	11581285	22995579	123368443	316	114651											
TNFRSF10A	8797	broad.mit.edu	37	chr8	23058174	23058174	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccctgtctcctctgcagcTggggcttccccagtgggctt	12	15	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23058174	A	A	23058174	1	1	126	0	1	0	0	0	0	0	0	0	16403	1595	55	5		5	TNFRSF10A	8	23058174	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	62595	23058174	123305848	317	114652											
NEFL	4747	broad.mit.edu	37	chr8	24811218	24811218	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaccgccgtaggcagatcGgccaaagacctgggagctct	12	12	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24811218	A	A	24811218	4	1	126	1	0	0	0	0	0	1	0	0	10410	1124	39	4	379	4	NEFL	8	24811218	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1753044	24811218	121552804	318	114653											
GPR124	25960	broad.mit.edu	37	chr8	37690447	37690447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggccccaaggagtccgGcctcaccgttctaaagtcgg	11	15	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37690447	T	T	37690447	1	4	126	0	1	0	0	0	0	0	0	0	6703	1218	42	3		3	GPR124	8	37690447	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	12879229	37690447	108673575	319	114654											
ADAM9	8754	broad.mit.edu	37	chr8	38948862	38948862	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgacacctcccagagaAgttgtaagtataaaatgaaa	8	8	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38948862	G	G	38948862	2	3	126	1	0	0	0	0	0	0	0	1	253	69	3	5		5	ADAM9	8	38948862	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	1258415	38948862	107415160	320	114655											
ADAM32	203102	broad.mit.edu	37	chr8	39131923	39131923	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaaattaagaatttatTgataattcacaatttatttc	4	3	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39131923	G	G	39131923	1	3	126	0	1	0	0	0	0	0	0	0	249	1827	63	5		5	ADAM32	8	39131923	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	183061	39131923	107232099	321	114656											
ADAM2	2515	broad.mit.edu	37	chr8	39634567	39634567	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttctggattcataatgcaGacagctcctgagcactggca	10	11	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39634567	T	T	39634567	2	4	126	1	0	0	0	0	0	0	0	1	241	929	33	3		3	ADAM2	8	39634567	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	502644	39634567	106729455	322	114657											
ADAM2	2515	broad.mit.edu	37	chr8	39694576	39694576	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcaacaggtgtgcatgaatGaaaaatggcagattaacttc	9	6	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39694576	T	T	39694576	1	4	126	0	1	0	0	0	0	0	0	0	241	1305	45	3		3	ADAM2	8	39694576	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	60009	39694576	106669446	323	114658											
AGPAT6	137964	broad.mit.edu	37	chr8	41471997	41471997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacgaagggcttctgtgGggagtgcaggagtgtgatgc	18	7	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41471997	T	T	41471997	1	4	126	0	1	0	0	0	0	0	0	0	391	1247	43	2		2	AGPAT6	8	41471997	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1777421	41471997	104892025	324	114659											
HOOK3	84376	broad.mit.edu	37	chr8	42823213	42823213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagaatcttataaaaagaaGctagaagaccttggtgattt	9	4	1	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42823213	T	T	42823213	3	4	126	1	0	0	0	0	1	0	0	0	7351	962	34	3	1020	3	HOOK3	8	42823213	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1351216	42823213	103540809	325	114660											
HGSNAT	138050	broad.mit.edu	37	chr8	43002071	43002071	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttttttttttttttttaaCttttcctaatttctaccaga	1	8	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43002071	T	T	43002071	1	4	126	0	1	0	0	0	0	0	0	0	7155	580	20	4		4	HGSNAT	8	43002071	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	178858	43002071	103361951	326	114661											
ST18	9705	broad.mit.edu	37	chr8	53077597	53077597	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatattggacagtgatgcaGcaattttcatcacacattgg	8	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53077597	A	A	53077597	1	1	126	0	1	0	0	0	0	0	0	0	15330	986	34	4		4	ST18	8	53077597	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	10075526	53077597	93286425	327	114662											
RB1CC1	9821	broad.mit.edu	37	chr8	53580824	53580824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatttcatgctattctgaCatacagcttgagagaaaata	7	6	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53580824	A	A	53580824	1	1	126	0	1	0	0	0	0	0	0	0	13207	493	17	3		3	RB1CC1	8	53580824	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	503227	53580824	92783198	328	114663											
OPRK1	4986	broad.mit.edu	37	chr8	54142028	54142028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtagagaatgggattcagGctactgttggtatagcctaa	13	6	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54142028	T	T	54142028	3	4	126	1	0	0	0	0	1	0	0	0	10979	1194	42	3	174	3	OPRK1	8	54142028	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	561204	54142028	92221994	329	114664											
EYA1	2138	broad.mit.edu	37	chr8	72246386	72246386	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcgttgaagctgtttcacTgctgctcattggctctgttt	10	9	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72246386	A	A	72246386	3	1	126	1	0	0	0	0	1	0	0	0	5371	1580	55	5	1690	5	EYA1	8	72246386	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	18104358	72246386	74117636	330	114665											
ZFPM2	23414	broad.mit.edu	37	chr8	106431305	106431305	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacaaaaaaaggctctaTttaaggattttatttcactg	6	5	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106431305	C	C	106431305	1	2	126	0	1	0	0	0	0	0	0	0	17784	1508	52	5		5	ZFPM2	8	106431305	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	34184919	106431305	39932717	331	114666											
CSMD3	114788	broad.mit.edu	37	chr8	114186001	114186001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtattaactgaattgGctatgcaggtgagctgaggg	14	5	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114186001	T	T	114186001	3	4	126	1	0	0	0	0	1	0	0	0	3980	1203	42	3	10736	3	CSMD3	8	114186001	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	7754696	114186001	32178021	332	114667											
COL14A1	7373	broad.mit.edu	37	chr8	121381596	121381596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggagagtcggcctggcaGccctgggccccctggctctc	16	15	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121381596	T	T	121381596	3	4	126	1	0	0	0	0	1	0	0	0	3703	971	34	3	5365	3	COL14A1	8	121381596	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	7195595	121381596	24982426	333	114668											
ATAD2	29028	broad.mit.edu	37	chr8	124381250	124381250	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagagtccagccctaacaTaaaaacaattatgttgtcat	5	9	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124381250	C	C	124381250	1	2	126	0	1	0	0	0	0	0	0	0	1075	1421	49	5		5	ATAD2	8	124381250	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	2999654	124381250	21982772	334	114669											
OC90	729330	broad.mit.edu	37	chr8	133046998	133046998	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacataaatgtgtcatgaAcataggcaggtggagcccag	13	7	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133046998	C	C	133046998	1	2	126	0	1	0	0	0	0	0	0	0	10909	58	2	5		5	OC90	8	133046998	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	8665748	133046998	13317024	335	114670											
TG	7038	broad.mit.edu	37	chr8	133980005	133980005	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcccctgtagaccccacAaaaactaaaatcacactact	2	15	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133980005	G	G	133980005	1	3	126	0	1	0	0	0	0	0	0	0	15936	145	5	5		5	TG	8	133980005	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	933007	133980005	12384017	336	114671											
NDRG1	10397	broad.mit.edu	37	chr8	134274543	134274543	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaacttagaagaacacagaTgttggcgttttttgtttttt	9	4	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134274543	A	A	134274543	1	1	126	0	1	0	0	0	0	0	0	0	10346	1479	51	5		5	NDRG1	8	134274543	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	294538	134274543	12089479	337	114672											
ZFAT	57623	broad.mit.edu	37	chr8	135622977	135622977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaaacactactctttcaCgggacagtaaaggaaacaca	9	9	2	0	rs35253760		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135622977	A	A	135622977	1	1	126	0	1	0	0	0	0	0	0	0	17758	551	19	3		3	ZFAT	8	135622977	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1348434	135622977	10741045	338	114673											
COL22A1	169044	broad.mit.edu	37	chr8	139788154	139788154	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagatggttccatgcacCctctcccttttctatggaaa	8	12	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139788154	A	A	139788154	1	1	126	0	1	0	0	0	0	0	0	0	3713	638	22	2		2	COL22A1	8	139788154	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4165177	139788154	6575868	339	114674											
ARHGAP39	80728	broad.mit.edu	37	chr8	145763254	145763254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgccaggagccagcgccCactcagctcccgcacttggc	10	18	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145763254	A	A	145763254	1	1	126	0	1	0	0	0	0	0	0	0	886	609	21	2		2	ARHGAP39	8	145763254	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5975100	145763254	600768	340	114675											
DOCK8	81704	broad.mit.edu	37	chr9	405014	405015	+	Frame_Shift_Ins	INS	-	T	T													gcattacctcaatctgaaccINSttttttttatgaatgctgat							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	405015	T	T	405014	7	5	126	1	0	1	1	0	0	0	0	0	4733	681	24	0	3437	0	DOCK8	9	405014	Frame_Shift_Ins	INS	-	TCGA-44-6774-01A-21D-1855-08		405014	140808417	341	114676											
C9orf68	55064	broad.mit.edu	37	chr9	4625390	4625390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattatttccaaggttcaaCtgagctggctggtcctggaa	10	8	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4625390	A	A	4625390	3	1	126	1	0	0	0	0	1	0	0	0	2517	564	20	3	596	3	C9orf68	9	4625390	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4220376	4625390	136588041	342	114677											
C9orf68	55064	broad.mit.edu	37	chr9	4625413	4625413	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctggctggtcctggaagaAatgcctggtagaatattgag	14	6	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4625413	C	C	4625413	3	2	126	1	0	0	0	0	1	0	0	0	2517	14	1	5	619	5	C9orf68	9	4625413	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	23	4625413	136588018	343	114678											
KIAA2026	158358	broad.mit.edu	37	chr9	5920027	5920027	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggtggaacaggaaccttaGcagttgtgtttatgagttgt	14	4	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5920027	C	C	5920027	3	2	126	1	0	0	0	0	1	0	0	0	8340	971	34	4	346	4	KIAA2026	9	5920027	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1294614	5920027	135293404	344	114679											
KIAA2026	158358	broad.mit.edu	37	chr9	5920648	5920648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaactggagtgaagtcCgagattgtcttttagaaata	11	4	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5920648	A	A	5920648	3	1	126	1	0	0	0	0	1	0	0	0	8340	652	23	1	967	1	KIAA2026	9	5920648	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	621	5920648	135292783	345	114680											
KDM4C	23081	broad.mit.edu	37	chr9	6734917	6734917	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtccccagtctgtgctaaGtctgtggctgtgcaactttt	10	10	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6734917	T	T	6734917	1	4	126	0	1	0	0	0	0	0	0	0	8200	1044	36	3		3	KDM4C	9	6734917	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	814269	6734917	134478514	346	114681											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18574457	18574457	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattgtgcgaaggaaaagtaGactagagttatttttctttc	9	4	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18574457	C	C	18574457	1	2	126	0	1	0	0	0	0	0	0	0	274	957	33	4		4	ADAMTSL1	9	18574457	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	11839540	18574457	122638974	347	114682											
DENND4C	55667	broad.mit.edu	37	chr9	19352253	19352253	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcagaatggcatttaacagGattctaagatacccttgtgg	9	7	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19352253	T	T	19352253	1	4	126	0	1	0	0	0	0	0	0	0	4475	1189	41	3		3	DENND4C	9	19352253	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	777796	19352253	121861178	348	114683											
KIAA1797	54914	broad.mit.edu	37	chr9	20946798	20946798	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatgaacaagcttcgactGttagtggagaatagccagca	11	7	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20946798	T	T	20946798	2	4	126	1	0	0	0	0	0	0	0	1	8328	1364	48	3		3	KIAA1797	9	20946798	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1594545	20946798	120266633	349	114684											
IFNA7	3444	broad.mit.edu	37	chr9	21202041	21202041	+	Frame_Shift_Del	DEL	C	-	-													agagattcttcccatttgtgCcaggagtatcaaggccctcc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21202041	-	-	21202041	7	5	126	1	0	1	0	1	0	0	0	0	7612	739	26	0	449	0	IFNA7	9	21202041	Frame_Shift_Del	DEL	C	TCGA-44-6774-01A-21D-1855-08	255243	21202041	120011390	350	114685											
PIP5K1B	8395	broad.mit.edu	37	chr9	71532398	71532398	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatatctagagctctctgAtaatgagtagatgagacgaa	10	5	2	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71532398	G	G	71532398	1	3	126	0	1	0	0	0	0	0	0	0	12035	348	12	5		5	PIP5K1B	9	71532398	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	50330357	71532398	69681033	351	114686											
C9orf95	54981	broad.mit.edu	37	chr9	77681845	77681845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaacatctcttgtaaatgCcaataggtttaaccaaggca	6	11	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77681845	A	A	77681845	1	1	126	0	1	0	0	0	0	0	0	0	2533	754	26	3		3	C9orf95	9	77681845	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	6149447	77681845	63531586	352	114687											
PCSK5	5125	broad.mit.edu	37	chr9	78794640	78794640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtgccaagtcacatccCcacagcatgtgccaggcatc	10	14	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78794640	A	A	78794640	1	1	126	0	1	0	0	0	0	0	0	0	11697	638	22	2		2	PCSK5	9	78794640	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1112795	78794640	62418791	353	114688											
ROR2	4920	broad.mit.edu	37	chr9	94486335	94486335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggacgtagagctgcggcGggggcaccatgggtctgatc	19	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94486335	T	T	94486335	3	4	126	1	0	0	0	0	1	0	0	0	13638	1116	39	1	394	1	ROR2	9	94486335	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	15691695	94486335	46727096	354	114689											
HIATL1	84641	broad.mit.edu	37	chr9	97203236	97203236	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtgaacatacactccctttCccttgggtcattaaaataat	5	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97203236	T	T	97203236	1	4	126	0	1	0	0	0	0	0	0	0	7165	870	30	4		4	HIATL1	9	97203236	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2716901	97203236	44010195	355	114690											
PAPPA	5069	broad.mit.edu	37	chr9	118997534	118997534	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcctcaaggctgctacctcGagctggagttcctctacccc	9	16	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118997534	T	T	118997534	4	4	126	1	0	0	0	0	0	1	0	0	11526	1059	37	3	2376	3	PAPPA	9	118997534	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	21794298	118997534	22215897	356	114691											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123156773	123156773	+	Intron	DEL	C	-	-													gtggtcaggcatagcggccaCccccacactcactcacattg							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123156773	-	-	123156773	6	5	126	0	1	1	0	1	0	0	0	0	3176	522	18	0		0	CDK5RAP2	9	123156773	Intron	DEL	C	TCGA-44-6774-01A-21D-1855-08	4159239	123156773	18056658	357	114692											
STOM	2040	broad.mit.edu	37	chr9	124110399	124110399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgctccacctttattcccCaggcatcagtggcatcatcc	6	17	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124110399	A	A	124110399	3	1	126	1	0	0	0	0	1	0	0	0	15430	595	21	2	320	2	STOM	9	124110399	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	953626	124110399	17103032	358	114693											
FAM73B	84895	broad.mit.edu	37	chr9	131825723	131825723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacactgggctcctctgtgGcaggtgggccacctacctgg	13	15	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131825723	T	T	131825723	1	4	126	0	1	0	0	0	0	0	0	0	5669	1218	42	3		3	FAM73B	9	131825723	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	7715324	131825723	9387708	359	114694											
COL5A1	1289	broad.mit.edu	37	chr9	137716415	137716415	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacccttcccatcctccatCacccaccgctgctcctgttc	5	21	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137716415	T	T	137716415	1	4	126	0	1	0	0	0	0	0	0	0	3728	841	29	4		4	COL5A1	9	137716415	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5890692	137716415	3497016	360	114695											
KCNT1	57582	broad.mit.edu	37	chr9	138677118	138677118	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggcgtggggggcaggggtgCgcccacaggtcccagactgc	19	13	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138677118	G	G	138677118	1	3	126	0	1	0	0	0	0	0	0	0	8161	783	27	4		4	KCNT1	9	138677118	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	960703	138677118	2536313	361	114696											
MAMDC4	158056	broad.mit.edu	37	chr9	139748411	139748411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaggaggggtctgggccCtgacttaggtcctaagagcc	15	10	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139748411	A	A	139748411	1	1	126	0	1	0	0	0	0	0	0	0	9296	696	24	2		2	MAMDC4	9	139748411	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1071293	139748411	1465020	362	114697											
IL2RA	3559	broad.mit.edu	37	chr10	6067872	6067872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagcatatagagtgaccCgctttttattctgcggaaac	9	9	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6067872	A	A	6067872	3	1	126	1	0	0	0	0	1	0	0	0	7756	652	23	1	665	1	IL2RA	10	6067872	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08		6067872	129466875	363	114698											
SFMBT2	57713	broad.mit.edu	37	chr10	7290439	7290439	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaacatatgtcatctggtcGtctttgagttgaaaggctta	10	7	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7290439	A	A	7290439	1	1	126	0	1	0	0	0	0	0	0	0	14271	1160	40	4		4	SFMBT2	10	7290439	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1222567	7290439	128244308	364	114699											
FRMD4A	55691	broad.mit.edu	37	chr10	13838315	13838315	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttgcacactcacaggcaCaccctgcaccctcgcacccc	5	22	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13838315	G	G	13838315	1	3	126	0	1	0	0	0	0	0	0	0	6111	493	17	4		4	FRMD4A	10	13838315	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	6547876	13838315	121696432	365	114700											
CUBN	8029	broad.mit.edu	37	chr10	16932533	16932533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctgcccacacctagcaCggacatacacagaactttaa	6	14	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16932533	A	A	16932533	1	1	126	0	1	0	0	0	0	0	0	0	4084	551	19	3		3	CUBN	10	16932533	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3094218	16932533	118602214	366	114701											
CACNB2	783	broad.mit.edu	37	chr10	18807779	18807779	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaagagaagtaaaattgtTttatcatcgttagtaatttt	6	4	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18807779	C	C	18807779	1	2	126	0	1	0	0	0	0	0	0	0	2579	1856	64	5		5	CACNB2	10	18807779	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	1875246	18807779	116726968	367	114702											
ARMC3	219681	broad.mit.edu	37	chr10	23244787	23244787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagctgtggaacctttaaCtaagctactcacccatgaag	9	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23244787	A	A	23244787	3	1	126	1	0	0	0	0	1	0	0	0	956	565	20	3	228	3	ARMC3	10	23244787	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4437008	23244787	112289960	368	114703											
ARMC3	219681	broad.mit.edu	37	chr10	23287230	23287230	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacgacatcatgcatgcCatcatcagcccactgcgttc	6	15	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23287230	A	A	23287230	2	1	126	1	0	0	0	0	0	0	0	1	956	581	21	2		2	ARMC3	10	23287230	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	42443	23287230	112247517	369	114704											
ZNF248	57209	broad.mit.edu	37	chr10	38108039	38108039	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctctctccacacactgTaccatttactaaaagaatat	2	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38108039	A	A	38108039	1	1	126	0	1	0	0	0	0	0	0	0	17919	1653	57	5		5	ZNF248	10	38108039	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	14820809	38108039	97426708	370	114705											
CXCL12	6387	broad.mit.edu	37	chr10	44876391	44876391	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattttggtaatgtgtgtctGggctgcagcagttggtgcag	16	5	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44876391	T	T	44876391	1	4	126	0	1	0	0	0	0	0	0	0	4113	1363	47	2		2	CXCL12	10	44876391	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	6768352	44876391	90658356	371	114706											
ALOX5	240	broad.mit.edu	37	chr10	45941139	45941139	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtgtggccatctgagcaCactgccagtctcactgtggg	12	12	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45941139	T	T	45941139	1	4	126	0	1	0	0	0	0	0	0	0	540	493	17	4		4	ALOX5	10	45941139	3'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	1064748	45941139	89593608	372	114707											
DKK1	22943	broad.mit.edu	37	chr10	54074087	54074087	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactctgggaccgcaggggGctcccggaccctgactctgc	15	15	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54074087	A	A	54074087	1	1	126	0	1	0	0	0	0	0	0	0	4584	1218	42	4		4	DKK1	10	54074087	5'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	8132948	54074087	81460660	373	114708											
CDK1	983	broad.mit.edu	37	chr10	62545585	62545585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaatatttatgcactgtGgatataaagggactatatat	7	3	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62545585	T	T	62545585	1	4	126	0	1	0	0	0	0	0	0	0	3154	1363	47	2		2	CDK1	10	62545585	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	8471498	62545585	72989162	374	114709											
MYPN	84665	broad.mit.edu	37	chr10	69882109	69882109	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagtaaggtaaaaatgtcCcattggtaatgctgagtaat	9	5	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69882109	T	T	69882109	1	4	126	0	1	0	0	0	0	0	0	0	10192	638	22	4		4	MYPN	10	69882109	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	7336524	69882109	65652638	375	114710											
HKDC1	80201	broad.mit.edu	37	chr10	71010090	71010090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttgggggaaccaacttcCgggtcctcctggtgaagatc	12	11	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71010090	T	T	71010090	3	4	126	1	0	0	0	0	1	0	0	0	7260	643	23	4	1657	4	HKDC1	10	71010090	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1127981	71010090	64524657	376	114711											
KCNMA1	3778	broad.mit.edu	37	chr10	78846406	78846406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggactcgggggtttcagcCtccatgggctccttcctctc	11	14	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78846406	A	A	78846406	1	1	126	0	1	0	0	0	0	0	0	0	8143	696	24	2		2	KCNMA1	10	78846406	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	7836316	78846406	56688341	377	114712											
MYOF	26509	broad.mit.edu	37	chr10	95066741	95066741	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacacatttggctttacaatCttcattgacaaatagttctg	5	8	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95066741	A	A	95066741	3	1	126	1	0	0	0	0	1	0	0	0	10183	912	32	3	24	3	MYOF	10	95066741	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	16220335	95066741	40468006	378	114713											
MYOF	26509	broad.mit.edu	37	chr10	95126285	95126285	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatccagaagtaccccattTtccaaacatgagagcttgat	6	10	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95126285	C	C	95126285	3	2	126	1	0	0	0	0	1	0	0	0	10183	1850	64	5	3684	5	MYOF	10	95126285	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	59544	95126285	40408462	379	114714											
TMEM20	159371	broad.mit.edu	37	chr10	95661109	95661109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagcaataatgaagacaatGgatgtggtctttgcttttat	10	4	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95661109	T	T	95661109	3	4	126	1	0	0	0	0	1	0	0	0	16245	1348	47	2	970	2	TMEM20	10	95661109	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	534824	95661109	39873638	380	114715											
PLCE1	51196	broad.mit.edu	37	chr10	96014518	96014518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattcataaagatattttgGtgctgcttgtatagaaacca	7	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96014518	T	T	96014518	1	4	126	0	1	0	0	0	0	0	0	0	12129	1276	44	3		3	PLCE1	10	96014518	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	353409	96014518	39520229	381	114716											
HELLS	3070	broad.mit.edu	37	chr10	96333850	96333850	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttttgacccagtccggaAgtgtaatggtcagccagtac	10	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96333850	G	G	96333850	3	3	126	1	0	0	0	0	1	0	0	0	7113	72	3	5	641	5	HELLS	10	96333850	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	319332	96333850	39200897	382	114717											
SLIT1	6585	broad.mit.edu	37	chr10	98816044	98816044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccaggcccacctgctgGgaggggagaagaagaaggca	15	12	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98816044	T	T	98816044	1	4	126	0	1	0	0	0	0	0	0	0	14853	1247	43	2		2	SLIT1	10	98816044	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2482194	98816044	36718703	383	114718											
C10orf79	80217	broad.mit.edu	37	chr10	105900796	105900796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaagcaagtagttgtaaTatatttcaaatttcacctat	4	6	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105900796	A	A	105900796	1	1	126	0	1	0	0	0	0	0	0	0	1629	1421	49	5		5	C10orf79	10	105900796	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	7084752	105900796	29633951	384	114719											
ABLIM1	3983	broad.mit.edu	37	chr10	116203986	116203986	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctttgtagcagatcccacAagaagtttctcttgctggag	9	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116203986	T	T	116203986	1	4	126	0	1	0	0	0	0	0	0	0	94	145	5	5		5	ABLIM1	10	116203986	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	10303190	116203986	19330761	385	114720											
FAM45A	404636	broad.mit.edu	37	chr10	120877099	120877099	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagttctcacaaaggggaTatgccagagtgaagaaaacg	12	7	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120877099	A	A	120877099	3	1	126	1	0	0	0	0	1	0	0	0	5615	1406	49	5	415	5	FAM45A	10	120877099	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	4673113	120877099	14657648	386	114721											
CPXM2	119587	broad.mit.edu	37	chr10	125557403	125557403	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgagctactgtgcctggtCtgcttagtttatttttattt	8	7	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125557403	T	T	125557403	1	4	126	0	1	0	0	0	0	0	0	0	3870	928	32	4		4	CPXM2	10	125557403	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4680304	125557403	9977344	387	114722											
C10orf90	118611	broad.mit.edu	37	chr10	128153569	128153569	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtgtactaaaaataaaacGagagttgtgctcaaaatctc	8	6	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128153569	T	T	128153569	1	4	126	0	1	0	0	0	0	0	0	0	1634	1073	37	3		3	C10orf90	10	128153569	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2596166	128153569	7381178	388	114723											
MKI67	4288	broad.mit.edu	37	chr10	129914362	129914362	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatattttaattgtttcaggTtgtcttataagctagctttt	6	4	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129914362	A	A	129914362	1	1	126	0	1	0	0	0	0	0	0	0	9691	1740	60	5		5	MKI67	10	129914362	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	1760793	129914362	5620385	389	114724											
PAOX	196743	broad.mit.edu	37	chr10	135203244	135203244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccctgcagacggcgccgGcgcccaggtatgtggcgtgc	15	16	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135203244	T	T	135203244	3	4	126	1	0	0	0	0	1	0	0	0	11517	1203	42	3	1407	3	PAOX	10	135203244	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	5288882	135203244	331503	390	114725											
FRG2B	441581	broad.mit.edu	37	chr10	135438794	135438794	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacctgggcacacagagGcccccggagccgagtgagca	14	15	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135438794	T	T	135438794	3	4	126	1	0	0	0	0	1	0	0	0	6107	1203	42	3	193	3	FRG2B	10	135438794	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	235550	135438794	95953	391	114726											
OR51E2	81285	broad.mit.edu	37	chr11	4703764	4703764	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagcatgcagagaaagaGgtacatcggagcgtgcaggc	15	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4703764	A	A	4703764	3	1	126	1	0	0	0	0	1	0	0	0	11189	1000	35	4	788	4	OR51E2	11	4703764	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08		4703764	130302752	392	114727											
CNGA4	1262	broad.mit.edu	37	chr11	6260974	6260974	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggttggtgctggactacacGagtgacctgctatacctact	11	10	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6260974	T	T	6260974	2	4	126	1	0	0	0	0	0	0	0	1	3631	1045	37	3		3	CNGA4	11	6260974	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1557210	6260974	128745542	393	114728											
SMPD1	6609	broad.mit.edu	37	chr11	6415869	6415869	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacatttgggaaagttcttGatgtaggaaagggtgaaaaa	12	4	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6415869	C	C	6415869	1	2	126	0	1	0	0	0	0	0	0	0	14918	1305	45	4		4	SMPD1	11	6415869	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	154895	6415869	128590647	394	114729											
NLRP10	338322	broad.mit.edu	37	chr11	7981773	7981773	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgatgtggcggaagctGtagaacttcttgatggcaag	14	6	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7981773	T	T	7981773	4	4	126	1	0	0	0	0	0	1	0	0	10567	1372	48	3	585	3	NLRP10	11	7981773	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1565904	7981773	127024743	395	114730											
IPO7	10527	broad.mit.edu	37	chr11	9438673	9438673	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagaaattttaaagactgTtgtgaacagggatgtaccta	10	4	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9438673	C	C	9438673	3	2	126	1	0	0	0	0	1	0	0	0	7867	1725	60	5	726	5	IPO7	11	9438673	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	1456900	9438673	125567843	396	114731											
IPO7	10527	broad.mit.edu	37	chr11	9456435	9456435	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaaaagcaaagaaagcAtttgtgttactaaagatgtg	8	4	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9456435	G	G	9456435	1	3	126	0	1	0	0	0	0	0	0	0	7867	232	8	5		5	IPO7	11	9456435	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	17762	9456435	125550081	397	114732											
SWAP70	23075	broad.mit.edu	37	chr11	9759806	9759806	+	Frame_Shift_Del	DEL	G	-	-													agcagaagaggaaaagaaacGccttcagactcaagtggaac							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9759806	-	-	9759806	7	5	126	1	0	1	0	1	0	0	0	0	15543	1087	38	0	1157	0	SWAP70	11	9759806	Frame_Shift_Del	DEL	G	TCGA-44-6774-01A-21D-1855-08	303371	9759806	125246710	398	114733											
IGSF22	283284	broad.mit.edu	37	chr11	18745745	18745745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagaactccatggacacGtgctcctgcagcatctgccg	11	14	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18745745	T	T	18745745	3	4	126	1	0	0	0	0	1	0	0	0	7670	1136	40	3	4029	3	IGSF22	11	18745745	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	8985939	18745745	116260771	399	114734											
NAV2	89797	broad.mit.edu	37	chr11	19735466	19735466	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgggggaggggctcccGctgcggaagagcggctcggt	20	12	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19735466	T	T	19735466	2	4	126	1	0	0	0	0	0	0	0	1	10278	1074	38	3		3	NAV2	11	19735466	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	989721	19735466	115271050	400	114735											
ANO3	63982	broad.mit.edu	37	chr11	26664731	26664731	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgctcttcttttgcagttTtgcaatttggttttaccacc	6	9	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26664731	C	C	26664731	2	2	126	1	0	0	0	0	0	0	0	1	698	1838	64	5		5	ANO3	11	26664731	Silent	SNP	T	TCGA-44-6774-01A-21D-1855-08	6929265	26664731	108341785	401	114736											
CCDC73	493860	broad.mit.edu	37	chr11	32697247	32697247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgtatatttcaaagaaaGtatcattaagataaacaggg	7	4	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32697247	T	T	32697247	1	4	126	0	1	0	0	0	0	0	0	0	2874	1044	36	3		3	CCDC73	11	32697247	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	6032516	32697247	102309269	402	114737											
HIPK3	10114	broad.mit.edu	37	chr11	33369722	33369722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttctcagaggtattttgGtaaaactaatggaatgggag	11	3	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33369722	T	T	33369722	3	4	126	1	0	0	0	0	1	0	0	0	7185	1261	44	3	2359	3	HIPK3	11	33369722	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	672475	33369722	101636794	403	114738											
RAG1	5896	broad.mit.edu	37	chr11	36598045	36598045	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccctctgggttgcattgAgggcttctcctagcaccctt	9	13	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36598045	C	C	36598045	1	2	126	0	1	0	0	0	0	0	0	0	13111	319	11	5		5	RAG1	11	36598045	3'UTR	SNP	A	TCGA-44-6774-01A-21D-1855-08	3228323	36598045	98408471	404	114739											
EXT2	2132	broad.mit.edu	37	chr11	44219263	44219263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcagttgcttagctctGggatctgtcctggtaaaagc	12	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44219263	T	T	44219263	1	4	126	0	1	0	0	0	0	0	0	0	5367	1363	47	2		2	EXT2	11	44219263	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	7621218	44219263	90787253	405	114740											
SYT13	57586	broad.mit.edu	37	chr11	45275883	45275883	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccaggcagtagtggagtTtgggggcctggttccaactg	16	8	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45275883	C	C	45275883	3	2	126	1	0	0	0	0	1	0	0	0	15588	1841	64	5	814	5	SYT13	11	45275883	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	1056620	45275883	89730633	406	114741											
MAPK8IP1	9479	broad.mit.edu	37	chr11	45924235	45924235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccgcccactgagagccGgatgtcagtcagctccgatc	11	16	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45924235	T	T	45924235	3	4	126	1	0	0	0	0	1	0	0	0	9376	1116	39	1	935	1	MAPK8IP1	11	45924235	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	648352	45924235	89082281	407	114742											
MADD	8567	broad.mit.edu	37	chr11	47333429	47333429	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccccttaggcttccccatGggtcatttcttggtttgtgt	9	12	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47333429	A	A	47333429	1	1	126	0	1	0	0	0	0	0	0	0	9240	1363	47	4		4	MADD	11	47333429	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1409194	47333429	87673087	408	114743											
OR4A47	403253	broad.mit.edu	37	chr11	48510784	48510785	+	Missense_Mutation	DNP	GG	TT	TT													tgtgctgctggtagtgtcctGggttggaggatttctgcact							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	48510785	TT	TT	48510784	3	4	126	1	0	0	0	0	1	0	0	0	11136	1357	47	2	442	2	OR4A47	11	48510784	Missense_Mutation	DNP	GG	TCGA-44-6774-01A-21D-1855-08	1177355	48510784	86495732	409	114744											
FOLH1	2346	broad.mit.edu	37	chr11	49175441	49175441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcactgaacttggaagCaatttctgtaaaattcttta	5	8	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49175441	A	A	49175441	3	1	126	1	0	0	0	0	1	0	0	0	6037	710	25	3	337	3	FOLH1	11	49175441	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	664657	49175441	85831075	410	114745											
OR5L1	219437	broad.mit.edu	37	chr11	55579627	55579627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaccatcctgaagatgGgctctgcagagggcaggcac	12	13	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55579627	T	T	55579627	3	4	126	1	0	0	0	0	1	0	0	0	11264	1232	43	2	687	2	OR5L1	11	55579627	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	6404186	55579627	79426889	411	114746											
VWCE	220001	broad.mit.edu	37	chr11	61032546	61032546	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacaggagcccatgagagcCgaggcctggccgggaacctg	16	12	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61032546	G	G	61032546	1	3	126	0	1	0	0	0	0	0	0	0	17372	667	23	4		4	VWCE	11	61032546	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5452919	61032546	73973970	412	114747											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62490080	62490080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagcacttacagcaaagCagccaataacatcattctcc	6	13	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62490080	A	A	62490080	3	1	126	1	0	0	0	0	1	0	0	0	7342	710	25	3	1191	3	HNRNPUL2	11	62490080	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1457534	62490080	72516436	413	114748											
PC	5091	broad.mit.edu	37	chr11	66631269	66631269	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacctcggacgcggaactcCgcaagggccctgctcatctt	10	16	2	0	rs148281644	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66631269	A	A	66631269	2	1	126	1	0	0	0	0	0	0	0	1	11591	639	23	1		1	PC	11	66631269	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	4141189	66631269	68375247	414	114749											
ARHGEF17	9828	broad.mit.edu	37	chr11	73071022	73071022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccctctgcctgacactgGggagccagagggtgggaggc	18	11	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73071022	T	T	73071022	1	4	126	0	1	0	0	0	0	0	0	0	902	1247	43	2		2	ARHGEF17	11	73071022	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	6439753	73071022	61935494	415	114750											
LRRC32	2615	broad.mit.edu	37	chr11	76372209	76372209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgcctcccccagcagcCgctccagcaggccgctgtac	12	18	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76372209	A	A	76372209	3	1	126	1	0	0	0	0	1	0	0	0	9074	652	23	1	1564	1	LRRC32	11	76372209	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	3301187	76372209	58634307	416	114751											
ODZ4	26011	broad.mit.edu	37	chr11	78387379	78387379	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctccatgccgttggccaGcagcagccgcaaggagccat	11	16	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78387379	A	A	78387379	2	1	126	1	0	0	0	0	0	0	0	1	10932	962	34	4		4	ODZ4	11	78387379	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	2015170	78387379	56619137	417	114752											
ODZ4	26011	broad.mit.edu	37	chr11	78437093	78437093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaaggttccaccccagcCtggttcaagtaattctatta	7	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78437093	A	A	78437093	1	1	126	0	1	0	0	0	0	0	0	0	10932	696	24	2		2	ODZ4	11	78437093	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	49714	78437093	56569423	418	114753											
CCDC81	60494	broad.mit.edu	37	chr11	86108852	86108852	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccagccatattgcttagCccaaggtaaataaagttaaa	7	9	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86108852	G	G	86108852	1	3	126	0	1	0	0	0	0	0	0	0	2883	754	26	4		4	CCDC81	11	86108852	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	7671759	86108852	48897664	419	114754											
NOX4	50507	broad.mit.edu	37	chr11	89106502	89106502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagcttgaaacacatacaCatctctatacatgctggtag	6	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89106502	T	T	89106502	1	4	126	0	1	0	0	0	0	0	0	0	10653	493	17	4		4	NOX4	11	89106502	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2997650	89106502	45900014	420	114755											
NAALAD2	10003	broad.mit.edu	37	chr11	89892318	89892318	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgacaaatatttgttatatAtatgaatgaaatattgtcat	5	2	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89892318	T	T	89892318	1	4	126	0	1	0	0	0	0	0	0	0	10222	464	16	5		5	NAALAD2	11	89892318	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	785816	89892318	45114198	421	114756											
BIRC2	329	broad.mit.edu	37	chr11	102239138	102239138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctttaatagagacctgGtgaaacaaacagttcaaagt	10	6	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102239138	T	T	102239138	3	4	126	1	0	0	0	0	1	0	0	0	1441	1261	44	3	1243	3	BIRC2	11	102239138	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	12346820	102239138	32767378	422	114757											
ATM	472	broad.mit.edu	37	chr11	108142314	108142314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaactacattgctttttgtTtaaggcttggctttctaaac	7	7	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108142314	A	A	108142314	1	1	126	0	1	0	0	0	0	0	0	0	1113	1856	64	5		5	ATM	11	108142314	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	5903176	108142314	26864202	423	114758											
BCO2	83875	broad.mit.edu	37	chr11	112051770	112051770	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attccacacagagtggctgaCattaaatgttggagggcggt	13	7	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112051770	T	T	112051770	1	4	126	0	1	0	0	0	0	0	0	0	1390	493	17	4		4	BCO2	11	112051770	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3909456	112051770	22954746	424	114759											
CEP164	22897	broad.mit.edu	37	chr11	117263457	117263458	+	Intron	DNP	GG	TT	TT													gctttggatggctcagctggGgttagcatttctagttccct							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	117263458	TT	TT	117263457	1	4	126	0	1	0	0	0	0	0	0	0	3279	1247	43	2		2	CEP164	11	117263457	Intron	DNP	GG	TCGA-44-6774-01A-21D-1855-08	5211687	117263457	17743059	425	114760											
CHEK1	1111	broad.mit.edu	37	chr11	125497573	125497573	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagatatgaagcgtgccgTagactgtccagaaaatatta	10	6	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125497573	C	C	125497573	3	2	126	1	0	0	0	0	1	0	0	0	3365	1638	57	5	143	5	CHEK1	11	125497573	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	8234116	125497573	9508943	426	114761											
NCAPD3	23310	broad.mit.edu	37	chr11	134051057	134051057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggtggagagtacatccCcacacacctgcgtcagcaat	10	14	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134051057	A	A	134051057	3	1	126	1	0	0	0	0	1	0	0	0	10301	623	22	2	2086	2	NCAPD3	11	134051057	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	8553484	134051057	955459	427	114762											
CACNA1C	775	broad.mit.edu	37	chr12	2714893	2714893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggaccatcgggaacatcGtgattgtcaccaccctgctg	10	14	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2714893	T	T	2714893	3	4	126	1	0	0	0	0	1	0	0	0	2566	1145	40	3	3363	3	CACNA1C	12	2714893	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08		2714893	131137002	428	114763											
NTF3	4908	broad.mit.edu	37	chr12	5603979	5603979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgatgtaaggaagccaggcCggtcaaaaacggttgcaggg	16	8	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603979	A	A	5603979	3	1	126	1	0	0	0	0	1	0	0	0	10791	652	23	1	644	1	NTF3	12	5603979	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2889086	5603979	128247916	429	114764											
FOXJ2	55810	broad.mit.edu	37	chr12	8201260	8201260	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcttacacttcactctAtcttattatccactttcccc	2	15	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8201260	G	G	8201260	1	3	126	0	1	0	0	0	0	0	0	0	6072	464	16	5		5	FOXJ2	12	8201260	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2597281	8201260	125650635	430	114765											
CLEC1A	51267	broad.mit.edu	37	chr12	10241744	10241744	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaagccccagggctgccaGccctatcagcagcaccaagc	9	17	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10241744	C	C	10241744	3	2	126	1	0	0	0	0	1	0	0	0	3537	962	34	4	669	4	CLEC1A	12	10241744	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2040484	10241744	123610151	431	114766											
LRP6	4040	broad.mit.edu	37	chr12	12311984	12311984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccactggttttgttggcaCgctcaatgctgcgtcggctc	13	12	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12311984	A	A	12311984	3	1	126	1	0	0	0	0	1	0	0	0	9049	536	19	3	2319	3	LRP6	12	12311984	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2070240	12311984	121539911	432	114767											
PTPRO	5800	broad.mit.edu	37	chr12	15668394	15668394	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtaacattctgaaatccCagctctaaataaatcttatt	4	8	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15668394	G	G	15668394	1	3	126	0	1	0	0	0	0	0	0	0	12917	609	21	4		4	PTPRO	12	15668394	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3356410	15668394	118183501	433	114768											
FAR2	55711	broad.mit.edu	37	chr12	29423295	29423295	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattttaagtgactttgaaTatgagaacttctgaagatgt	8	4	1	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29423295	A	A	29423295	1	1	126	0	1	0	0	0	0	0	0	0	5732	1421	49	5		5	FAR2	12	29423295	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	13754901	29423295	104428600	434	114769											
TMTC1	83857	broad.mit.edu	37	chr12	29669312	29669312	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctgcttgctatagatGgctgacaagaggcgatagca	11	9	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29669312	T	T	29669312	2	4	126	1	0	0	0	0	0	0	0	1	16383	1335	47	2		2	TMTC1	12	29669312	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	246017	29669312	104182583	435	114770											
DENND5B	160518	broad.mit.edu	37	chr12	31633191	31633191	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctttaggcatgcacaacTgtgaaagaaagaaaaaaaaa	8	7	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31633191	A	A	31633191	5	1	126	1	0	0	0	0	0	0	1	0	4477	1594	55	5	3664	5	DENND5B	12	31633191	Splice_Site	SNP	T	TCGA-44-6774-01A-21D-1855-08	1963879	31633191	102218704	436	114771											
PKP2	5318	broad.mit.edu	37	chr12	32955525	32955525	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcctataagtgctattgTatttgatttcacgataacat	5	6	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32955525	C	C	32955525	1	2	126	0	1	0	0	0	0	0	0	0	12080	1653	57	5		5	PKP2	12	32955525	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	1322334	32955525	100896370	437	114772											
CSRNP2	81566	broad.mit.edu	37	chr12	51458343	51458343	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccagctccagcttcataAtggtgtggaggtaatgagtc	11	9	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51458343	C	C	51458343	3	2	126	1	0	0	0	0	1	0	0	0	3998	101	4	5	817	5	CSRNP2	12	51458343	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	18502818	51458343	82393552	438	114773											
TFCP2	7024	broad.mit.edu	37	chr12	51495784	51495784	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatttggatcacatcatctCtagttaatttcaataaatct	4	7	5	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51495784	G	G	51495784	3	3	126	1	0	0	0	0	1	0	0	0	15918	913	32	4	443	4	TFCP2	12	51495784	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	37441	51495784	82356111	439	114774											
KRT75	9119	broad.mit.edu	37	chr12	52827436	52827436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgtggggcaagctggcCtgacttggaagggtctcagc	16	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52827436	A	A	52827436	1	1	126	0	1	0	0	0	0	0	0	0	8559	696	24	2		2	KRT75	12	52827436	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1331652	52827436	81024459	440	114775											
KRT6A	3853	broad.mit.edu	37	chr12	52886334	52886334	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgcagagctgggctgagtCctcttctccctccctcctag	9	16	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52886334	A	A	52886334	1	1	126	0	1	0	0	0	0	0	0	0	8551	870	30	3		3	KRT6A	12	52886334	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	58898	52886334	80965561	441	114776											
KRT76	51350	broad.mit.edu	37	chr12	53166448	53166448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttcccaggtggggtggaGctgagtcctgagccccattg	14	11	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53166448	T	T	53166448	1	4	126	0	1	0	0	0	0	0	0	0	8560	986	34	3		3	KRT76	12	53166448	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	280114	53166448	80685447	442	114777											
CALCOCO1	57658	broad.mit.edu	37	chr12	54106546	54106546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttcctccccggaggacCctaggtacctacctggtggt	10	16	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54106546	A	A	54106546	1	1	126	0	1	0	0	0	0	0	0	0	2603	638	22	2		2	CALCOCO1	12	54106546	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	940098	54106546	79745349	443	114778											
NCKAP1L	3071	broad.mit.edu	37	chr12	54905707	54905707	+	Intron	DEL	C	-	-													gaacaagttctaaaagtcttCctctgcactgttttcccacc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54905707	-	-	54905707	6	5	126	0	1	1	0	1	0	0	0	0	10317	870	30	0		0	NCKAP1L	12	54905707	Intron	DEL	C	TCGA-44-6774-01A-21D-1855-08	799161	54905707	78946188	444	114779											
ANKRD52	283373	broad.mit.edu	37	chr12	56637709	56637709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctaagctgcccttccaCctccagacagggtggcaagg	12	13	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56637709	A	A	56637709	1	1	126	0	1	0	0	0	0	0	0	0	678	522	18	3		3	ANKRD52	12	56637709	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1732002	56637709	77214186	445	114780											
ARHGAP9	64333	broad.mit.edu	37	chr12	57870448	57870448	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcctgggaagtggagGgaatgggatctgtaagtcac	14	9	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57870448	A	A	57870448	1	1	126	0	1	0	0	0	0	0	0	0	891	1247	43	4		4	ARHGAP9	12	57870448	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1232739	57870448	75981447	446	114781											
HELB	92797	broad.mit.edu	37	chr12	66718995	66718995	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatttttgttgcacttatTagcaaacaaaaattaggaaa	5	4	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66718995	A	A	66718995	1	1	126	0	1	0	0	0	0	0	0	0	7112	1769	61	5		5	HELB	12	66718995	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	8848547	66718995	67132900	447	114782											
GRIP1	23426	broad.mit.edu	37	chr12	66786619	66786619	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaaagccaaatagtaatagGagaggtagaaataatccctg	10	5	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66786619	C	C	66786619	1	2	126	0	1	0	0	0	0	0	0	0	6853	1189	41	4		4	GRIP1	12	66786619	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	67624	66786619	67065276	448	114783											
GRIP1	23426	broad.mit.edu	37	chr12	66911599	66911599	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctacattttactgtaaaatTtctaatttatcaacttctat	2	7	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66911599	A	A	66911599	1	1	126	0	1	0	0	0	0	0	0	0	6853	1856	64	5		5	GRIP1	12	66911599	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	124980	66911599	66940296	449	114784											
PTPRB	5787	broad.mit.edu	37	chr12	70948941	70948941	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaactcatgataacttaccAtcagcctctctcaccaccac	2	16	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70948941	T	T	70948941	3	4	126	1	0	0	0	0	1	0	0	0	12904	231	8	5	1565	5	PTPRB	12	70948941	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	4037342	70948941	62902954	450	114785											
ZFC3H1	196441	broad.mit.edu	37	chr12	72056983	72056983	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggtccaaggcgaggtggctCcgctcccagaaagacggccg	15	14	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72056983	A	A	72056983	2	1	126	1	0	0	0	0	0	0	0	1	17759	842	30	3		3	ZFC3H1	12	72056983	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	1108042	72056983	61794912	451	114786											
NAV3	89795	broad.mit.edu	37	chr12	78444565	78444565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctggagacaacatttgaCagcactgtgacaacagaagt	9	10	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78444565	A	A	78444565	3	1	126	1	0	0	0	0	1	0	0	0	10279	477	17	3	2196	3	NAV3	12	78444565	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	6387582	78444565	55407330	452	114787											
NAV3	89795	broad.mit.edu	37	chr12	78534247	78534247	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagcaaaataacggcataCtctaagctgcccaataccca	6	12	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78534247	T	T	78534247	1	4	126	0	1	0	0	0	0	0	0	0	10279	580	20	4		4	NAV3	12	78534247	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	89682	78534247	55317648	453	114788											
ATP2B1	490	broad.mit.edu	37	chr12	90028574	90028574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatagaagtaagggatcCttatctaaagactttttaac	7	7	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90028574	A	A	90028574	3	1	126	1	0	0	0	0	1	0	0	0	1143	680	24	2	3120	2	ATP2B1	12	90028574	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	11494327	90028574	43823321	454	114789											
DCN	1634	broad.mit.edu	37	chr12	91539800	91539800	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgacattaacaagattTtgccaggttataaaaatgag	8	5	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91539800	A	A	91539800	1	1	126	0	1	0	0	0	0	0	0	0	4330	1856	64	5		5	DCN	12	91539800	3'UTR	SNP	T	TCGA-44-6774-01A-21D-1855-08	1511226	91539800	42312095	455	114790											
VEZT	55591	broad.mit.edu	37	chr12	95668488	95668488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatgctttcatgaaaagGctttgttgattgccttaacc	7	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95668488	T	T	95668488	1	4	126	0	1	0	0	0	0	0	0	0	17283	1218	42	3		3	VEZT	12	95668488	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	4128688	95668488	38183407	456	114791											
STAB2	55576	broad.mit.edu	37	chr12	104054243	104054243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattccaatattttgacgCtagaaaatgtcctttatctg	6	7	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104054243	A	A	104054243	1	1	126	0	1	0	0	0	0	0	0	0	15356	812	28	3		3	STAB2	12	104054243	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	8385755	104054243	29797652	457	114792											
OAS1	4938	broad.mit.edu	37	chr12	113355323	113355323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagagccccagcttctcaCctgtccctctctaaatgctg	7	16	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113355323	T	T	113355323	1	4	126	0	1	0	0	0	0	0	0	0	10894	522	18	4		4	OAS1	12	113355323	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	9301080	113355323	20496572	458	114793											
KDM2B	84678	broad.mit.edu	37	chr12	121987610	121987611	+	Intron	DNP	CC	AA	AA													ccagatcctacatgggagccCctcactaaacaaaagctgct							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	121987611	AA	AA	121987610	1	1	126	0	1	0	0	0	0	0	0	0	8195	638	22	2		2	KDM2B	12	121987610	Intron	DNP	CC	TCGA-44-6774-01A-21D-1855-08	8632287	121987610	11864285	459	114794											
HPD	3242	broad.mit.edu	37	chr12	122287013	122287013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagatgggggtgagaagGtggctaccccccagattgct	15	8	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122287013	T	T	122287013	1	4	126	0	1	0	0	0	0	0	0	0	7399	1276	44	3		3	HPD	12	122287013	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	299403	122287013	11564882	460	114795											
DDX55	57696	broad.mit.edu	37	chr12	124102348	124102348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagctcgcattggccacGggggcagcgctctggtgttc	15	13	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124102348	T	T	124102348	3	4	126	1	0	0	0	0	1	0	0	0	4406	1116	39	1	1135	1	DDX55	12	124102348	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1815335	124102348	9749547	461	114796											
DNAH10	196385	broad.mit.edu	37	chr12	124322985	124322985	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccctgcttgacggctgTcctctgttctggtccagatc	9	15	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124322985	A	A	124322985	1	1	126	0	1	0	0	0	0	0	0	0	4638	1682	58	5		5	DNAH10	12	124322985	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	220637	124322985	9528910	462	114797											
DNAH10	196385	broad.mit.edu	37	chr12	124362333	124362333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagctgacattctgcacGctagcactttacaaaaatat	7	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124362333	T	T	124362333	2	4	126	1	0	0	0	0	0	0	0	1	4638	1074	38	3		3	DNAH10	12	124362333	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	39348	124362333	9489562	463	114798											
DHX37	57647	broad.mit.edu	37	chr12	125453084	125453084	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccagggcctcacctgcGggcagcatccggtggatctt	14	14	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125453084	T	T	125453084	2	4	126	1	0	0	0	0	0	0	0	1	4550	1103	39	1		1	DHX37	12	125453084	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1090751	125453084	8398811	464	114799											
RIMBP2	23504	broad.mit.edu	37	chr12	130921572	130921572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacggctctgctcccaggCctcatccatcctggcgtggg	12	16	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130921572	A	A	130921572	3	1	126	1	0	0	0	0	1	0	0	0	13472	739	26	3	1328	3	RIMBP2	12	130921572	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	5468488	130921572	2930323	465	114800											
STX2	2054	broad.mit.edu	37	chr12	131293251	131293251	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaactttgttcaatagcTaggaacaaataggaaataat	6	5	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131293251	A	A	131293251	5	1	126	1	0	0	0	0	0	0	1	0	15463	1536	53	5	693	5	STX2	12	131293251	Splice_Site	SNP	T	TCGA-44-6774-01A-21D-1855-08	371679	131293251	2558644	466	114801											
GOLGA3	2802	broad.mit.edu	37	chr12	133389914	133389914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcctgctggcgcttcacCctgtactgtttgagctgctc	9	15	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133389914	A	A	133389914	3	1	126	1	0	0	0	0	1	0	0	0	6618	622	22	2	4220	2	GOLGA3	12	133389914	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2096663	133389914	461981	467	114802											
LATS2	26524	broad.mit.edu	37	chr13	21557438	21557438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgagtttaatgtgacCatccagatctatcaaaatgt	7	7	3	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21557438	A	A	21557438	3	1	126	1	0	0	0	0	1	0	0	0	8719	594	21	2	875	2	LATS2	13	21557438	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08		21557438	93612440	468	114803											
SGCG	6445	broad.mit.edu	37	chr13	23853548	23853548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtttcagatcaactccaacGacggcaagccactatttact	6	12	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23853548	T	T	23853548	3	4	126	1	0	0	0	0	1	0	0	0	14316	1058	37	3	450	3	SGCG	13	23853548	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2296110	23853548	91316330	469	114804											
FLT3	2322	broad.mit.edu	37	chr13	28636349	28636349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaacccactgagaacacGttgccgactgaaggtcctat	10	12	0	2	rs138419807	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28636349	T	T	28636349	1	4	126	0	1	0	0	0	0	0	0	0	6000	1160	40	3		3	FLT3	13	28636349	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	4782801	28636349	86533529	470	114805											
FRY	10129	broad.mit.edu	37	chr13	32706107	32706107	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctactgtctaaataattCatgaagtcctttgtaaccaa	4	8	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32706107	A	A	32706107	1	1	126	0	1	0	0	0	0	0	0	0	6123	841	29	3		3	FRY	13	32706107	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4069758	32706107	82463771	471	114806											
SIAH3	283514	broad.mit.edu	37	chr13	46425646	46425646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctttaggttgtgtgtgGggttgacgacacagacaagt	13	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46425646	T	T	46425646	3	4	126	1	0	0	0	0	1	0	0	0	14414	1232	43	2	698	2	SIAH3	13	46425646	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	13719539	46425646	68744232	472	114807											
HTR2A	3356	broad.mit.edu	37	chr13	47466725	47466725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggcagaggccaccggtacCctatgaggcagaaggttggt	15	10	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47466725	A	A	47466725	3	1	126	1	0	0	0	0	1	0	0	0	7511	637	22	2	1010	2	HTR2A	13	47466725	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1041079	47466725	67703153	473	114808											
RCBTB2	1102	broad.mit.edu	37	chr13	49076038	49076038	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatgcttccagagttagCtacagacataatgaacacac	7	10	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49076038	T	T	49076038	1	4	126	0	1	0	0	0	0	0	0	0	13280	812	28	4		4	RCBTB2	13	49076038	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1609313	49076038	66093840	474	114809											
LECT1	11061	broad.mit.edu	37	chr13	53286963	53286963	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatctacagccacccagatAagagaattttcttcatattt	5	9	3	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53286963	T	T	53286963	2	4	126	1	0	0	0	0	0	0	0	1	8784	349	13	5		5	LECT1	13	53286963	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	4210925	53286963	61882915	475	114810											
DACH1	1602	broad.mit.edu	37	chr13	72256078	72256078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaatttttacaattaagCtattgtcttacacatcattt	2	6	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72256078	A	A	72256078	1	1	126	0	1	0	0	0	0	0	0	0	4253	812	28	3		3	DACH1	13	72256078	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	18969115	72256078	42913800	476	114811											
SLAIN1	122060	broad.mit.edu	37	chr13	78293813	78293813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagactggagcaaggtaattGtgagtgtgtgcatttacatt	12	4	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78293813	T	T	78293813	1	4	126	0	1	0	0	0	0	0	0	0	14478	1392	48	3		3	SLAIN1	13	78293813	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	6037735	78293813	36876065	477	114812											
GPR18	2841	broad.mit.edu	37	chr13	99908075	99908075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaattttgtattcatctgGatgtgagctgttaaaaggga	11	4	2	1	rs138394107		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99908075	T	T	99908075	3	4	126	1	0	0	0	0	1	0	0	0	6740	1174	41	3	947	3	GPR18	13	99908075	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	21614262	99908075	15261803	478	114813											
NALCN	259232	broad.mit.edu	37	chr13	102047695	102047695	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgctgatgatggcacagaTgcgcagcaaagagtgaaccc	13	10	0	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102047695	A	A	102047695	3	1	126	1	0	0	0	0	1	0	0	0	10242	1464	51	5	5254	5	NALCN	13	102047695	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	2139620	102047695	13122183	479	114814											
DAOA	267012	broad.mit.edu	37	chr13	106142120	106142120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacacatttgtataacccCttacccttgaatgtgggcag	8	11	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106142120	A	A	106142120	1	1	126	0	1	0	0	0	0	0	0	0	4265	696	24	2		2	DAOA	13	106142120	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4094425	106142120	9027758	480	114815											
OR4M1	441670	broad.mit.edu	37	chr14	20248962	20248962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattctataatacaggtgGctctcattgttcgacttcct	6	10	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20248962	T	T	20248962	3	4	126	1	0	0	0	0	1	0	0	0	11169	1203	42	3	483	3	OR4M1	14	20248962	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08		20248962	87100578	481	114816											
MYH6	4624	broad.mit.edu	37	chr14	23861701	23861701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattgtgtagaaccctaagCagctgctgcagcctcagtta	9	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23861701	A	A	23861701	1	1	126	0	1	0	0	0	0	0	0	0	10132	725	25	3		3	MYH6	14	23861701	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3612739	23861701	83487839	482	114817											
DHRS4	10901	broad.mit.edu	37	chr14	24435560	24435560	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaccctggccatagagctGgccccaaggaacattagggt	12	11	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24435560	C	C	24435560	2	2	126	1	0	0	0	0	0	0	0	1	4532	1335	47	4		4	DHRS4	14	24435560	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	573859	24435560	82913980	483	114818											
NOVA1	4857	broad.mit.edu	37	chr14	27064784	27064784	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaatgcaaagaaatatactCggttaacacagtatttcaaa	5	6	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27064784	A	A	27064784	1	1	126	0	1	0	0	0	0	0	0	0	10649	899	31	3		3	NOVA1	14	27064784	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	2629224	27064784	80284756	484	114819											
LRFN5	145581	broad.mit.edu	37	chr14	42355863	42355863	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttatctgtttctcattgGcatagcagtgaaagctcaga	8	7	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42355863	A	A	42355863	3	1	126	1	0	0	0	0	1	0	0	0	9028	1203	42	4	37	4	LRFN5	14	42355863	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	15291079	42355863	64993677	485	114820											
FSCB	84075	broad.mit.edu	37	chr14	44975985	44975985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctggagagacttactaGtcatttcctgtccatgcttt	8	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44975985	T	T	44975985	3	4	126	1	0	0	0	0	1	0	0	0	6126	1029	36	3	2275	3	FSCB	14	44975985	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2620122	44975985	62373555	486	114821											
FANCM	57697	broad.mit.edu	37	chr14	45639873	45639873	+	Frame_Shift_Del	DEL	G	-	-													gaacagactttatagattaaGggacagtgatgaaattaaag							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45639873	-	-	45639873	7	5	126	1	0	1	0	1	0	0	0	0	5728	1000	35	0	2130	0	FANCM	14	45639873	Frame_Shift_Del	DEL	G	TCGA-44-6774-01A-21D-1855-08	663888	45639873	61709667	487	114822											
RPL10L	140801	broad.mit.edu	37	chr14	47120853	47120853	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaaagatgcggatcttGgcatcaggaacccctcggca	12	11	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47120853	T	T	47120853	2	4	126	1	0	0	0	0	0	0	0	1	13667	1335	47	2		2	RPL10L	14	47120853	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1480980	47120853	60228687	488	114823											
FRMD6	122786	broad.mit.edu	37	chr14	52178252	52178252	+	Frame_Shift_Del	DEL	A	-	-													aaatcctattcctacaggatAaaagggaaattgaagcatcg							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52178252	-	-	52178252	7	5	126	1	0	1	0	1	0	0	0	0	6114	363	13	0	720	0	FRMD6	14	52178252	Frame_Shift_Del	DEL	A	TCGA-44-6774-01A-21D-1855-08	5057399	52178252	55171288	489	114824											
FRMD6	122786	broad.mit.edu	37	chr14	52182275	52182275	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgccacctgtggcctcttActctgaatgggggttttgag	12	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52182275	T	T	52182275	1	4	126	0	1	0	0	0	0	0	0	0	6114	406	14	5		5	FRMD6	14	52182275	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	4023	52182275	55167265	490	114825											
KCNH5	27133	broad.mit.edu	37	chr14	63447817	63447817	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgttgttctgctttgtttTgaaggaaacattataaggaa	9	3	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63447817	A	A	63447817	4	1	126	1	0	0	0	0	0	1	0	0	8105	1821	63	5	2309	5	KCNH5	14	63447817	Nonsense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	11265542	63447817	43901723	491	114826											
GPHB5	122876	broad.mit.edu	37	chr14	63784422	63784422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgaagcccctgcagcctgGcttcttggccaggaaagtaa	11	13	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63784422	T	T	63784422	3	4	126	1	0	0	0	0	1	0	0	0	6674	1203	42	3	141	3	GPHB5	14	63784422	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	336605	63784422	43565118	492	114827											
SYNE2	23224	broad.mit.edu	37	chr14	64473833	64473833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagacatttacaagaaatGgctaattctcttccacactt	5	9	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64473833	T	T	64473833	3	4	126	1	0	0	0	0	1	0	0	0	15565	1348	47	2	4588	2	SYNE2	14	64473833	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	689411	64473833	42875707	493	114828											
SYNE2	23224	broad.mit.edu	37	chr14	64516346	64516346	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagaaattatatacccagttGgaagcaaagaaagcagccat	8	7	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64516346	C	C	64516346	3	2	126	1	0	0	0	0	1	0	0	0	15565	1339	47	4	7577	4	SYNE2	14	64516346	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	42513	64516346	42833194	494	114829											
ACTN1	87	broad.mit.edu	37	chr14	69347514	69347514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccgaagaggaacaaggcCagccccacccacctccatgg	9	18	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69347514	A	A	69347514	1	1	126	0	1	0	0	0	0	0	0	0	204	609	21	2		2	ACTN1	14	69347514	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4831168	69347514	38002026	495	114830											
SIPA1L1	26037	broad.mit.edu	37	chr14	72196611	72196611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaccaggaattcttggGttagctccttgaggttgtag	12	6	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72196611	T	T	72196611	1	4	126	0	1	0	0	0	0	0	0	0	14442	1276	44	3		3	SIPA1L1	14	72196611	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2849097	72196611	35152929	496	114831											
ESRRB	2103	broad.mit.edu	37	chr14	76967021	76967021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgcccagctggcatctgCtgtctgtcttttctagggaa	10	11	5	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76967021	A	A	76967021	1	1	126	0	1	0	0	0	0	0	0	0	5303	812	28	3		3	ESRRB	14	76967021	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4770410	76967021	30382519	497	114832											
DIO2	1734	broad.mit.edu	37	chr14	80668677	80668677	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacagtagcttccctaatGtagtaattattcaggtaagt	8	6	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80668677	T	T	80668677	1	4	126	0	1	0	0	0	0	0	0	0	4565	1392	48	3		3	DIO2	14	80668677	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	3701656	80668677	26680863	498	114833											
PSMC1	5700	broad.mit.edu	37	chr14	90731337	90731337	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacttatttttgttgaaagcAagatattgtcatgttgccaa	7	5	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90731337	C	C	90731337	1	2	126	0	1	0	0	0	0	0	0	0	12791	145	5	5		5	PSMC1	14	90731337	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	10062660	90731337	16618203	499	114834											
UBR7	55148	broad.mit.edu	37	chr14	93688768	93688768	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagccctgtaagttttgaatGaagggtttatttcctttgac	9	6	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93688768	T	T	93688768	1	4	126	0	1	0	0	0	0	0	0	0	17032	1305	45	3		3	UBR7	14	93688768	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2957431	93688768	13660772	500	114835											
SERPINA6	866	broad.mit.edu	37	chr14	94770786	94770786	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcataaccctcgccaggaaaAggctgctccaggtgaagtgg	12	11	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94770786	G	G	94770786	3	3	126	1	0	0	0	0	1	0	0	0	14206	72	3	5	34	5	SERPINA6	14	94770786	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	1082018	94770786	12578754	501	114836											
SERPINA9	327657	broad.mit.edu	37	chr14	94936237	94936238	+	Intron	DNP	CC	AA	AA													tgagggggtaaactgagggtCcaggccctgaatcagagacc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	94936238	AA	AA	94936237	1	1	126	0	1	0	0	0	0	0	0	0	14208	870	30	3		3	SERPINA9	14	94936237	Intron	DNP	CC	TCGA-44-6774-01A-21D-1855-08	165451	94936237	12413303	502	114837											
C14orf49	161176	broad.mit.edu	37	chr14	95903289	95903289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgggagaaatcttcatgGctcccttcttcttcctgtag	9	11	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95903289	T	T	95903289	3	4	126	1	0	0	0	0	1	0	0	0	1789	1194	42	3	537	3	C14orf49	14	95903289	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	967052	95903289	11446251	503	114838											
EVL	51466	broad.mit.edu	37	chr14	100604129	100604129	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagcccccttcagtcgcagCctcactctaggtaccgaaca	8	16	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100604129	G	G	100604129	3	3	126	1	0	0	0	0	1	0	0	0	5333	739	26	4	1126	4	EVL	14	100604129	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4700840	100604129	6745411	504	114839											
DLK1	8788	broad.mit.edu	37	chr14	101200835	101200835	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaagcgcgcgctgagcCcccagcaggtcacccgtctg	12	16	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200835	T	T	101200835	3	4	126	1	0	0	0	0	1	0	0	0	4604	623	22	4	772	4	DLK1	14	101200835	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	596706	101200835	6148705	505	114840											
AHNAK2	113146	broad.mit.edu	37	chr14	105419467	105419467	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtccagcttggggcccTtgaggtccactttgggcatc	13	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105419467	C	C	105419467	3	2	126	1	0	0	0	0	1	0	0	0	415	1609	56	5	15070	5	AHNAK2	14	105419467	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	4218632	105419467	1930073	506	114841											
HERC2	8924	broad.mit.edu	37	chr15	28493667	28493667	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaacgagccccgatcacatAcaagacactttcacatttta	5	12	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28493667	G	G	28493667	1	3	126	0	1	0	0	0	0	0	0	0	7125	406	14	5		5	HERC2	15	28493667	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08		28493667	74037725	507	114842											
RYR3	6263	broad.mit.edu	37	chr15	33927047	33927047	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attggaaatagtattggggcTgaagagcactagactaaatg	12	4	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33927047	A	A	33927047	1	1	126	0	1	0	0	0	0	0	0	0	13881	1595	55	5		5	RYR3	15	33927047	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	5433380	33927047	68604345	508	114843											
RYR3	6263	broad.mit.edu	37	chr15	34034707	34034707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcccaagaacattaaagGgcccagtcctggaaatctgc	9	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34034707	T	T	34034707	1	4	126	0	1	0	0	0	0	0	0	0	13881	1247	43	2		2	RYR3	15	34034707	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	107660	34034707	68496685	509	114844											
C15orf41	84529	broad.mit.edu	37	chr15	36910696	36910696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcaacagctgaatcaaaGcctccaacaccaaagtttga	5	13	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36910696	T	T	36910696	1	4	126	0	1	0	0	0	0	0	0	0	1808	986	34	3		3	C15orf41	15	36910696	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2875989	36910696	65620696	510	114845											
PLCB2	5330	broad.mit.edu	37	chr15	40586546	40586546	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcttgtccggccggcgcAtgaactcatgcttgaggagg	14	11	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40586546	G	G	40586546	3	3	126	1	0	0	0	0	1	0	0	0	12123	217	8	5	1631	5	PLCB2	15	40586546	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	3675850	40586546	61944846	511	114846											
ADAL	161823	broad.mit.edu	37	chr15	43641346	43641346	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgttctaaaagtacgaatGtcatctagctattaaaagat	6	6	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43641346	A	A	43641346	1	1	126	0	1	0	0	0	0	0	0	0	233	1392	48	4		4	ADAL	15	43641346	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3054800	43641346	58890046	512	114847											
TRIM69	140691	broad.mit.edu	37	chr15	45059693	45059693	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcagctgtcctctaactcCtgagcaaggattctggcttt	11	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45059693	T	T	45059693	3	4	126	1	0	0	0	0	1	0	0	0	16667	681	24	4	1252	4	TRIM69	15	45059693	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1418347	45059693	57471699	513	114848											
MYEF2	50804	broad.mit.edu	37	chr15	48459602	48459602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtaacctcaccaactaCataagacatacaaaaggaag	6	9	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48459602	A	A	48459602	1	1	126	0	1	0	0	0	0	0	0	0	10118	493	17	3		3	MYEF2	15	48459602	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3399909	48459602	54071790	514	114849											
AP4E1	23431	broad.mit.edu	37	chr15	51237242	51237242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttttttcaccgttggtGgtgacaaaactgtgaaacaa	8	8	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51237242	T	T	51237242	1	4	126	0	1	0	0	0	0	0	0	0	754	1363	47	2		2	AP4E1	15	51237242	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2777640	51237242	51294150	515	114850											
SCG3	29106	broad.mit.edu	37	chr15	51991556	51991556	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcttcagaccaaaaacaaGctagaaaaaaatgctactga	6	9	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51991556	C	C	51991556	3	2	126	1	0	0	0	0	1	0	0	0	14004	962	34	4	1060	4	SCG3	15	51991556	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	754314	51991556	50539836	516	114851											
PTPLAD1	51495	broad.mit.edu	37	chr15	65847232	65847232	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttctttatagctcaaggAcatggtgccaaaggagacaa	9	8	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65847232	T	T	65847232	2	4	126	1	0	0	0	0	0	0	0	1	12881	262	10	5		5	PTPLAD1	15	65847232	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	13855676	65847232	36684160	517	114852											
PML	5371	broad.mit.edu	37	chr15	74290415	74290415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcggaagccaagtgccCgaagctgctgccttgtctgc	13	14	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74290415	A	A	74290415	3	1	126	1	0	0	0	0	1	0	0	0	12230	652	23	1	206	1	PML	15	74290415	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	8443183	74290415	28240977	518	114853											
ISLR2	57611	broad.mit.edu	37	chr15	74425705	74425705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagcacccgggtgtccttaCccgagcccgactccattgct	10	17	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74425705	A	A	74425705	3	1	126	1	0	0	0	0	1	0	0	0	7929	507	18	3	612	3	ISLR2	15	74425705	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	135290	74425705	28105687	519	114854											
CCDC33	80125	broad.mit.edu	37	chr15	74573106	74573106	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatgctgacagggaaaggCttggacgggcttcacgtgga	16	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74573106	T	T	74573106	2	4	126	1	0	0	0	0	0	0	0	1	2833	784	28	4		4	CCDC33	15	74573106	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	147401	74573106	27958286	520	114855											
CYP11A1	1583	broad.mit.edu	37	chr15	74654222	74654222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccaatacaaacggttccCagtttttcatctgcactgac	6	12	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74654222	A	A	74654222	1	1	126	0	1	0	0	0	0	0	0	0	4177	609	21	2		2	CYP11A1	15	74654222	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	81116	74654222	27877170	521	114856											
SGK269	79834	broad.mit.edu	37	chr15	77471208	77471208	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcctgtagtaatgcattctCtgctctacccttctccatga	6	13	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77471208	A	A	77471208	4	1	126	1	0	0	0	0	0	1	0	0	14324	922	32	3	2195	3	SGK269	15	77471208	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2816986	77471208	25060184	522	114857											
CHRNB4	1143	broad.mit.edu	37	chr15	78923767	78923767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggctgtgagctccaggCccacgtgaccaactgccacc	10	15	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78923767	A	A	78923767	1	1	126	0	1	0	0	0	0	0	0	0	3424	754	26	3		3	CHRNB4	15	78923767	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1452559	78923767	23607625	523	114858											
SLC28A1	9154	broad.mit.edu	37	chr15	85448795	85448795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggagggccgtgtcttgggGacttggactgcagtttgtac	16	8	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85448795	T	T	85448795	3	4	126	1	0	0	0	0	1	0	0	0	14645	1174	41	3	722	3	SLC28A1	15	85448795	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	6525028	85448795	17082597	524	114859											
SLC28A1	9154	broad.mit.edu	37	chr15	85487830	85487830	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaacggaagagcgacttctCccagatagtgctccgggcgc	12	14	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85487830	T	T	85487830	3	4	126	1	0	0	0	0	1	0	0	0	14645	855	30	4	1826	4	SLC28A1	15	85487830	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	39035	85487830	17043562	525	114860											
UNC45A	55898	broad.mit.edu	37	chr15	91482943	91482943	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccgtgatttgttccatgCtttgttggtttgtctaggtg	13	6	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91482943	G	G	91482943	1	3	126	0	1	0	0	0	0	0	0	0	17114	812	28	4		4	UNC45A	15	91482943	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5995113	91482943	11048449	526	114861											
SV2B	9899	broad.mit.edu	37	chr15	91809768	91809768	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacattgaaaactctgacaCaaagtggggttcaaattctc	7	9	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91809768	G	G	91809768	1	3	126	0	1	0	0	0	0	0	0	0	15536	493	17	4		4	SV2B	15	91809768	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	326825	91809768	10721624	527	114862											
MCTP2	55784	broad.mit.edu	37	chr15	94945072	94945072	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatcagggtacctgatctaGatggaatatttgtagtattt	10	4	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94945072	C	C	94945072	1	2	126	0	1	0	0	0	0	0	0	0	9494	957	33	4		4	MCTP2	15	94945072	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	3135304	94945072	7586320	528	114863											
LINS1	55180	broad.mit.edu	37	chr15	101114229	101114229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggtaataacttctagCatgcaagatggtttcaaaaa	9	7	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101114229	A	A	101114229	3	1	126	1	0	0	0	0	1	0	0	0	8891	710	25	3	1436	3	LINS1	15	101114229	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	6169157	101114229	1417163	529	114864											
OR1F1	4992	broad.mit.edu	37	chr16	3255074	3255074	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacactatggctactgtGttgtatacagtagtgactcc	9	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3255074	T	T	3255074	2	4	126	1	0	0	0	0	0	0	0	1	11050	1364	48	3		3	OR1F1	16	3255074	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08		3255074	87099679	530	114865											
UBN1	29855	broad.mit.edu	37	chr16	4910738	4910738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttaagcgttaaagagatgCtaaagaaatttcagaaagag	9	4	1	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4910738	T	T	4910738	2	4	126	1	0	0	0	0	0	0	0	1	17018	796	28	4		4	UBN1	16	4910738	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	1655664	4910738	85444015	531	114866											
PPL	5493	broad.mit.edu	37	chr16	4940293	4940293	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acgtggtcatggccgcggtgGaagtgctcgtaggctgcctt	16	10	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4940293	C	C	4940293	3	2	126	1	0	0	0	0	1	0	0	0	12435	1165	41	4	3085	4	PPL	16	4940293	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	29555	4940293	85414460	532	114867											
USP7	7874	broad.mit.edu	37	chr16	8995984	8995984	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctccactagcagccagctCgggatcaactgtttccagga	10	14	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8995984	A	A	8995984	4	1	126	1	0	0	0	0	0	1	0	0	17215	893	31	3	1362	3	USP7	16	8995984	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4055691	8995984	81358769	533	114868											
GRIN2A	2903	broad.mit.edu	37	chr16	10031860	10031860	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggcctctccatctgcccGtagcagctggccttggcctc	10	17	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10031860	A	A	10031860	2	1	126	1	0	0	0	0	0	0	0	1	6845	1140	40	4		4	GRIN2A	16	10031860	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1035876	10031860	80322893	534	114869											
MYH11	4629	broad.mit.edu	37	chr16	15851756	15851756	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttccactcgatgccctcGcgctggtactcctcctgctc	8	17	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15851756	T	T	15851756	2	4	126	1	0	0	0	0	0	0	0	1	10125	1074	38	3		3	MYH11	16	15851756	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	5819896	15851756	74502997	535	114870											
TMC7	79905	broad.mit.edu	37	chr16	19041391	19041391	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctttatttaccaaacacTgaatactccctgtgcctctg	6	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19041391	A	A	19041391	1	1	126	0	1	0	0	0	0	0	0	0	16113	1595	55	5		5	TMC7	16	19041391	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	3189635	19041391	71313362	536	114871											
ACSM2A	123876	broad.mit.edu	37	chr16	20488572	20488572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgaggagcagggggagCcaccaagtgcaggccaagtt	17	8	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20488572	A	A	20488572	1	1	126	0	1	0	0	0	0	0	0	0	183	754	26	3		3	ACSM2A	16	20488572	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1447181	20488572	69866181	537	114872											
ACSM1	116285	broad.mit.edu	37	chr16	20648649	20648649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcaaattgtccaaccccCgctgagccctaactgctccc	7	17	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20648649	A	A	20648649	1	1	126	0	1	0	0	0	0	0	0	0	182	667	23	1		1	ACSM1	16	20648649	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	160077	20648649	69706104	538	114873											
GSG1L	146395	broad.mit.edu	37	chr16	27818859	27818859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaagtcctcctcgctccCgtccctcttctccatcctgg	7	18	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27818859	A	A	27818859	3	1	126	1	0	0	0	0	1	0	0	0	6887	652	23	1	156	1	GSG1L	16	27818859	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	7170210	27818859	62535894	539	114874											
CD2BP2	10421	broad.mit.edu	37	chr16	30365803	30365803	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgctcccaacccattcctcAgagaacctgaaaaaactagg	6	14	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30365803	T	T	30365803	1	4	126	0	1	0	0	0	0	0	0	0	3025	203	7	5		5	CD2BP2	16	30365803	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2546944	30365803	59988950	540	114875											
ARMC5	79798	broad.mit.edu	37	chr16	31476036	31476036	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaccgggcccgcccagcccAcgtgcactgcgcattctgtc	11	19	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31476036	T	T	31476036	2	4	126	1	0	0	0	0	0	0	0	1	958	146	6	5		5	ARMC5	16	31476036	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	1110233	31476036	58878717	541	114876											
BBS2	583	broad.mit.edu	37	chr16	56519510	56519510	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagagacttaccccgcagaCgacctgctctttgaattgct	8	12	1	3	rs138913160	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56519510	T	T	56519510	3	4	126	1	0	0	0	0	1	0	0	0	1343	536	19	4	122	4	BBS2	16	56519510	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	25043474	56519510	33835243	542	114877											
MT1H	4496	broad.mit.edu	37	chr16	56704907	56704907	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgctgtgcctgatgtcgGgacagccctgctgtcagatg	14	11	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56704907	C	C	56704907	1	2	126	0	1	0	0	0	0	0	0	0	9996	1247	43	4		4	MT1H	16	56704907	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	185397	56704907	33649846	543	114878											
NUP93	9688	broad.mit.edu	37	chr16	56867362	56867362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaatgtaaccacagcacGtcccccttggggcgacggtg	12	13	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56867362	T	T	56867362	1	4	126	0	1	0	0	0	0	0	0	0	10867	1160	40	3		3	NUP93	16	56867362	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	162455	56867362	33487391	544	114879											
CDH16	1014	broad.mit.edu	37	chr16	66948064	66948064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatatccatgagactcgGgcctggctgcaccatccatg	9	14	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66948064	T	T	66948064	1	4	126	0	1	0	0	0	0	0	0	0	3131	1247	43	2		2	CDH16	16	66948064	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	10080702	66948064	23406689	545	114880											
SMPD3	55512	broad.mit.edu	37	chr16	68405827	68405827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgggccgactgcagtggGgaccagaagagaaagccgag	18	10	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68405827	T	T	68405827	2	4	126	1	0	0	0	0	0	0	0	1	14920	1219	43	2		2	SMPD3	16	68405827	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1457763	68405827	21948926	546	114881											
PDPR	55066	broad.mit.edu	37	chr16	70190519	70190519	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagcccatttaccggaatGggcagtatgttggcaagacc	13	9	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70190519	T	T	70190519	3	4	126	1	0	0	0	0	1	0	0	0	11783	1348	47	2	2443	2	PDPR	16	70190519	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1784692	70190519	20164234	547	114882											
SF3B3	23450	broad.mit.edu	37	chr16	70599102	70599102	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcagtgggcctctgtgatCcgagtgatgaatcccattca	13	10	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70599102	T	T	70599102	2	4	126	1	0	0	0	0	0	0	0	1	14265	845	30	4		4	SF3B3	16	70599102	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	408583	70599102	19755651	548	114883											
HYDIN	54768	broad.mit.edu	37	chr16	70977730	70977730	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacctgtatccgctctgcCaggatctgcacgagaagttc	9	15	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70977730	T	T	70977730	2	4	126	1	0	0	0	0	0	0	0	1	7537	581	21	4		4	HYDIN	16	70977730	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	378628	70977730	19377023	549	114884											
HYDIN	54768	broad.mit.edu	37	chr16	71220652	71220652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattttacatattaattccCggatacattaccattcggtt	5	8	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71220652	A	A	71220652	1	1	126	0	1	0	0	0	0	0	0	0	7537	667	23	1		1	HYDIN	16	71220652	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	242922	71220652	19134101	550	114885											
CHST4	10164	broad.mit.edu	37	chr16	71570875	71570875	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgtgcgggatctgataCgggccgtcttcttgtgcgac	15	10	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71570875	A	A	71570875	2	1	126	1	0	0	0	0	0	0	0	1	3437	527	19	3		3	CHST4	16	71570875	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	350223	71570875	18783878	551	114886											
LDHD	197257	broad.mit.edu	37	chr16	75147632	75147632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgccccactccacccCagcatacctgtgcgctgcag	8	20	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75147632	A	A	75147632	1	1	126	0	1	0	0	0	0	0	0	0	8775	609	21	2		2	LDHD	16	75147632	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3576757	75147632	15207121	552	114887											
CNTNAP4	85445	broad.mit.edu	37	chr16	76573585	76573585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcaaagtacgatttttaCtaaaagaatcacaatttttc	3	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76573585	A	A	76573585	1	1	126	0	1	0	0	0	0	0	0	0	3681	580	20	3		3	CNTNAP4	16	76573585	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1425953	76573585	13781168	553	114888											
ADAMTS18	170692	broad.mit.edu	37	chr16	77325493	77325493	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggagggatgggattacacAaggtcaaccacactcactcg	11	10	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77325493	G	G	77325493	1	3	126	0	1	0	0	0	0	0	0	0	263	145	5	5		5	ADAMTS18	16	77325493	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	751908	77325493	13029260	554	114889											
CDH13	1012	broad.mit.edu	37	chr16	83158977	83158977	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattttaatcaatccttttgTtttcccttttaggatatatt	4	6	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83158977	A	A	83158977	1	1	126	0	1	0	0	0	0	0	0	0	3129	1740	60	5		5	CDH13	16	83158977	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	5833484	83158977	7195776	555	114890											
SMYD4	114826	broad.mit.edu	37	chr17	1690320	1690320	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaagagagagtcaaacacTacgtaaaaaccttcagctta	7	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1690320	A	A	1690320	1	1	126	0	1	0	0	0	0	0	0	0	14938	1537	53	5		5	SMYD4	17	1690320	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08		1690320	79504890	556	114891											
OR1A1	8383	broad.mit.edu	37	chr17	3119679	3119679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtattatggtacagtcatGggcacgtatttccgcccttt	9	9	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3119679	T	T	3119679	3	4	126	1	0	0	0	0	1	0	0	0	11043	1348	47	2	767	2	OR1A1	17	3119679	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1429359	3119679	78075531	557	114892											
TRPV3	162514	broad.mit.edu	37	chr17	3458179	3458179	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagggcagatgctcaggcCggggggacagggggagcttc	19	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3458179	T	T	3458179	1	4	126	0	1	0	0	0	0	0	0	0	16722	667	23	4		4	TRPV3	17	3458179	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	338500	3458179	77737031	558	114893											
USP6	9098	broad.mit.edu	37	chr17	5035773	5035773	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctggtccagggacgtaggGactgggcgggtggtcagtga	21	7	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5035773	A	A	5035773	1	1	126	0	1	0	0	0	0	0	0	0	17213	1189	41	4		4	USP6	17	5035773	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1577594	5035773	76159437	559	114894											
TEKT1	83659	broad.mit.edu	37	chr17	6703489	6703489	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctggatctcctcctgcaGggcaagctgtctgcgatgca	12	13	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6703489	A	A	6703489	2	1	126	1	0	0	0	0	0	0	0	1	15874	991	35	4		4	TEKT1	17	6703489	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1667716	6703489	74491721	560	114895											
TP53	7157	broad.mit.edu	37	chr17	7577548	7577548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggcctccggttcatgcCgcccatgcaggaactgttac	12	13	1	0	rs28934575		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577548	A	A	7577548	3	1	126	1	0	0	0	0	1	0	0	0	16505	652	23	1	557	1	TP53	17	7577548	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	874059	7577548	73617662	561	114896											
CNTROB	116840	broad.mit.edu	37	chr17	7839674	7839674	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacccagactcctcacccTtttccccagcattgtgagcg	6	17	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7839674	C	C	7839674	1	2	126	0	1	0	0	0	0	0	0	0	3683	1624	56	5		5	CNTROB	17	7839674	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	262126	7839674	73355536	562	114897											
SLC25A35	399512	broad.mit.edu	37	chr17	8200108	8200108	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactttgggaggcagaggCaggcagatcacatgaggtca	15	8	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8200108	A	A	8200108	1	1	126	0	1	0	0	0	0	0	0	0	14613	725	25	3		3	SLC25A35	17	8200108	5'Flank	SNP	C	TCGA-44-6774-01A-21D-1855-08	360434	8200108	72995102	563	114898											
ARHGEF15	22899	broad.mit.edu	37	chr17	8221720	8221720	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagaatatcctgcgccagAcagaagaggggtccagccgt	12	13	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8221720	T	T	8221720	3	4	126	1	0	0	0	0	1	0	0	0	900	275	10	5	1754	5	ARHGEF15	17	8221720	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	21612	8221720	72973490	564	114899											
WDR16	146845	broad.mit.edu	37	chr17	9544957	9544957	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttgctcccttctatatAaagtagagccatcttttgtt	5	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9544957	G	G	9544957	1	3	126	0	1	0	0	0	0	0	0	0	17403	377	13	5		5	WDR16	17	9544957	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	1323237	9544957	71650253	565	114900											
MYH8	4626	broad.mit.edu	37	chr17	10296216	10296216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgctcggcctcatctagacGatgctgcaggtccttcaccg	10	15	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10296216	A	A	10296216	3	1	126	1	0	0	0	0	1	0	0	0	10135	1058	37	4	434	4	MYH8	17	10296216	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	751259	10296216	70898994	566	114901											
MYH2	4620	broad.mit.edu	37	chr17	10443964	10443964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggccacactgatctcccCttgactgacaaatgggtaat	9	12	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10443964	A	A	10443964	3	1	126	1	0	0	0	0	1	0	0	0	10129	681	24	2	4990	2	MYH2	17	10443964	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	147748	10443964	70751246	567	114902											
DNAH9	1770	broad.mit.edu	37	chr17	11592912	11592912	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catccaccctcatcaaatgcTggatgccaggcacatcgaga	8	14	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11592912	A	A	11592912	3	1	126	1	0	0	0	0	1	0	0	0	4648	1580	55	5	3851	5	DNAH9	17	11592912	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	1148948	11592912	69602298	568	114903											
TBC1D28	254272	broad.mit.edu	37	chr17	18539621	18539621	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccctgccaagctcctagGctttggggcaacaccaggag	13	13	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18539621	T	T	18539621	1	4	126	0	1	0	0	0	0	0	0	0	15736	1218	42	3		3	TBC1D28	17	18539621	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	6946709	18539621	62655589	569	114904											
FAM83G	644815	broad.mit.edu	37	chr17	18907267	18907267	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccagcgccagccgctgctCctcgctgtagaagaactcag	10	16	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18907267	T	T	18907267	3	4	126	1	0	0	0	0	1	0	0	0	5692	864	30	4	2403	4	FAM83G	17	18907267	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	367646	18907267	62287943	570	114905											
ULK2	9706	broad.mit.edu	37	chr17	19699311	19699311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatatggcataaatcaccCgctacactaatgtagtcttg	6	11	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19699311	A	A	19699311	1	1	126	0	1	0	0	0	0	0	0	0	17102	667	23	1		1	ULK2	17	19699311	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	792044	19699311	61495899	571	114906											
MAP2K3	5606	broad.mit.edu	37	chr17	21207679	21207679	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcacagctatgcagagcaTggcacctgcctccagtcgtg	13	13	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21207679	C	C	21207679	1	2	126	0	1	0	0	0	0	0	0	0	9330	1479	51	5		5	MAP2K3	17	21207679	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	1508368	21207679	59987531	572	114907											
WSB1	26118	broad.mit.edu	37	chr17	25630509	25630509	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattatagactgtggagataTagtctggagtcttgcttttg	11	4	2	2	rs142114425		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25630509	C	C	25630509	3	2	126	1	0	0	0	0	1	0	0	0	17531	1406	49	5	336	5	WSB1	17	25630509	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	4422830	25630509	55564701	573	114908											
WSB1	26118	broad.mit.edu	37	chr17	25631888	25631888	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggaagcttgatcctggtGtcagcttcaagagacaaaac	11	8	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25631888	T	T	25631888	2	4	126	1	0	0	0	0	0	0	0	1	17531	1364	48	3		3	WSB1	17	25631888	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1379	25631888	55563322	574	114909											
TAOK1	57551	broad.mit.edu	37	chr17	27857754	27857754	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagctctcctgaagcttgggAaatgtggtggtggttcattt	13	6	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27857754	G	G	27857754	1	3	126	0	1	0	0	0	0	0	0	0	15666	261	9	5		5	TAOK1	17	27857754	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	2225866	27857754	53337456	575	114910											
OMG	4974	broad.mit.edu	37	chr17	29622582	29622582	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttaaagatgatatttgGgtagaacatggagtccctat	9	6	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29622582	T	T	29622582	2	4	126	1	0	0	0	0	0	0	0	1	10960	1219	43	2		2	OMG	17	29622582	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1764828	29622582	51572628	576	114911											
LRRC37B	114659	broad.mit.edu	37	chr17	30354889	30354889	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaatcatatttttgagtttTtagtcatattatctttaaaa	3	3	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30354889	A	A	30354889	1	1	126	0	1	0	0	0	0	0	0	0	9081	1856	64	5		5	LRRC37B	17	30354889	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	732307	30354889	50840321	577	114912											
UNC45B	146862	broad.mit.edu	37	chr17	33513323	33513323	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccctgcctccagacaacCcagtggttggagatcctcca	8	15	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33513323	A	A	33513323	2	1	126	1	0	0	0	0	0	0	0	1	17115	610	22	2		2	UNC45B	17	33513323	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	3158434	33513323	47681887	578	114913											
AMAC1	146861	broad.mit.edu	37	chr17	33520803	33520803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtagtgtccagagtccaGgtcccacaatgatgattagt	10	10	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33520803	T	T	33520803	3	4	126	1	0	0	0	0	1	0	0	0	559	1000	35	2	496	2	AMAC1	17	33520803	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	7480	33520803	47674407	579	114914											
AP2B1	163	broad.mit.edu	37	chr17	33997940	33997940	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgccatctgtttttttcAccatgagaagcactgccccc	7	13	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33997940	G	G	33997940	1	3	126	0	1	0	0	0	0	0	0	0	743	174	6	5		5	AP2B1	17	33997940	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	477137	33997940	47197270	580	114915											
CCL15	6359	broad.mit.edu	37	chr17	34324712	34324712	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attactttcattaccagacaCaacaatatatatatttttta	1	7	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34324712	A	A	34324712	1	1	126	0	1	0	0	0	0	0	0	0	2914	493	17	3		3	CCL15	17	34324712	3'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	326772	34324712	46870498	581	114916											
CCL4	6351	broad.mit.edu	37	chr17	34432678	34432678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaatcctgggtccaggaGtacgtgtatgacctggaact	13	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34432678	T	T	34432678	3	4	126	1	0	0	0	0	1	0	0	0	2932	1020	36	3	262	3	CCL4	17	34432678	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	107966	34432678	46762532	582	114917											
WIPF2	147179	broad.mit.edu	37	chr17	38420636	38420636	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaacccagaattattcaattCctttccctgctgccatgcag	5	13	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38420636	T	T	38420636	1	4	126	0	1	0	0	0	0	0	0	0	17495	870	30	4		4	WIPF2	17	38420636	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3987958	38420636	42774574	583	114918											
JUP	3728	broad.mit.edu	37	chr17	39740415	39740415	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttcaagtgatcctcctgtCtcagcctcccaagtagctgg	9	13	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39740415	A	A	39740415	1	1	126	0	1	0	0	0	0	0	0	0	8042	928	32	3		3	JUP	17	39740415	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1319779	39740415	41454795	584	114919											
RAB5C	5878	broad.mit.edu	37	chr17	40280425	40280425	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagacagggacagaatgtCgaagggacagagaaggcatt	16	5	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40280425	A	A	40280425	1	1	126	0	1	0	0	0	0	0	0	0	13058	899	31	3		3	RAB5C	17	40280425	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	540010	40280425	40914785	585	114920											
RUNDC1	146923	broad.mit.edu	37	chr17	41143758	41143758	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgccctaaccccagacaaGctccttgttcagtagggata	9	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41143758	T	T	41143758	1	4	126	0	1	0	0	0	0	0	0	0	13853	986	34	3		3	RUNDC1	17	41143758	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	863333	41143758	40051452	586	114921											
DHX8	1659	broad.mit.edu	37	chr17	41571108	41571108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagacggcgaaatcttgtcGgggagaccaatgaggagacc	14	8	1	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41571108	T	T	41571108	3	4	126	1	0	0	0	0	1	0	0	0	4555	1116	39	1	1096	1	DHX8	17	41571108	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	427350	41571108	39624102	587	114922											
MEOX1	4222	broad.mit.edu	37	chr17	41738726	41738726	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggctgagaagtcaggGtacgctgccgtcgctgtcgc	16	11	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41738726	T	T	41738726	4	4	126	1	0	0	0	0	0	1	0	0	9566	1256	44	3	599	3	MEOX1	17	41738726	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	167618	41738726	39456484	588	114923											
LRRC37A	9884	broad.mit.edu	37	chr17	44408380	44408380	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagcataaggcagcagtctCtgtgctgaaacccttctcca	9	12	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44408380	A	A	44408380	3	1	126	1	0	0	0	0	1	0	0	0	9078	913	32	3	3771	3	LRRC37A	17	44408380	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2669654	44408380	36786830	589	114924											
IGF2BP1	10642	broad.mit.edu	37	chr17	47109377	47109377	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgggtgcggtggggggggGttctgtgaagggtggtgtga	25	3	1	2	rs34685424		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47109377	A	A	47109377	1	1	126	0	1	0	0	0	0	0	0	0	7643	1276	44	4		4	IGF2BP1	17	47109377	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2700997	47109377	34085833	590	114925											
PDK2	5164	broad.mit.edu	37	chr17	48186587	48186587	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttccctccctgcatcagtCcctgcagctccaggaggccc	8	20	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48186587	G	G	48186587	1	3	126	0	1	0	0	0	0	0	0	0	11770	870	30	4		4	PDK2	17	48186587	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1077210	48186587	33008623	591	114926											
CA10	56934	broad.mit.edu	37	chr17	49710786	49710786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagaacaggtctaagcagAaagactgagctctagcctag	10	8	2	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49710786	G	G	49710786	1	3	126	0	1	0	0	0	0	0	0	0	2537	261	9	5		5	CA10	17	49710786	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	1524199	49710786	31484424	592	114927											
CA10	56934	broad.mit.edu	37	chr17	50149796	50149796	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agattaagatgatagcagagAagcactgtgtcccggctgtc	12	8	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50149796	T	T	50149796	1	4	126	0	1	0	0	0	0	0	0	0	2537	261	9	5		5	CA10	17	50149796	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	439010	50149796	31045414	593	114928											
KIF2B	84643	broad.mit.edu	37	chr17	51901012	51901012	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcaagatctcagtcctGgagcccccgcaagaacatcg	10	14	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901012	T	T	51901012	2	4	126	1	0	0	0	0	0	0	0	1	8368	1335	47	2		2	KIF2B	17	51901012	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1751216	51901012	29294198	594	114929											
C17orf71	55181	broad.mit.edu	37	chr17	57288024	57288024	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagtctcctttacctattCtctgtctgtcatatcttgct	4	13	6	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57288024	G	G	57288024	3	3	126	1	0	0	0	0	1	0	0	0	1894	912	32	4	614	4	C17orf71	17	57288024	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	5387012	57288024	23907186	595	114930											
USP32	84669	broad.mit.edu	37	chr17	58268048	58268048	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagcctctgcaaaatctaAaaagggggaaaagatccaca	8	9	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58268048	C	C	58268048	1	2	126	0	1	0	0	0	0	0	0	0	17190	29	1	5		5	USP32	17	58268048	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	980024	58268048	22927162	596	114931											
SCN4A	6329	broad.mit.edu	37	chr17	62018615	62018615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaaagaggatgtccaggCagtggatcttgtcccctggc	15	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62018615	A	A	62018615	3	1	126	1	0	0	0	0	1	0	0	0	14033	710	25	3	487	3	SCN4A	17	62018615	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	3750567	62018615	19176595	597	114932											
ARSG	22901	broad.mit.edu	37	chr17	66347874	66347874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctccaggacaaggcaaaGttccaagactgtggtccatc	11	11	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66347874	T	T	66347874	1	4	126	0	1	0	0	0	0	0	0	0	996	1044	36	3		3	ARSG	17	66347874	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	4329259	66347874	14847336	598	114933											
GPR142	350383	broad.mit.edu	37	chr17	72368403	72368403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagtgggctgcagccccgGgtgggcaagagcacagccat	17	12	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72368403	T	T	72368403	2	4	126	1	0	0	0	0	0	0	0	1	6715	1219	43	2		2	GPR142	17	72368403	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	6020529	72368403	8826807	599	114934											
CD300LB	124599	broad.mit.edu	37	chr17	72527477	72527477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagaaggagcagagcagGgggcagccacatggctctgc	17	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72527477	T	T	72527477	3	4	126	1	0	0	0	0	1	0	0	0	3029	1232	43	2	608	2	CD300LB	17	72527477	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	159074	72527477	8667733	600	114935											
CD300C	10871	broad.mit.edu	37	chr17	72537606	72537607	+	3'UTR	DNP	GG	TT	TT													ggcacagggaaaaggctgaaGgaggctcacaaaggattcca							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	72537607	TT	TT	72537606	1	4	126	0	1	0	0	0	0	0	0	0	3027	1015	35	2		2	CD300C	17	72537606	3'UTR	DNP	GG	TCGA-44-6774-01A-21D-1855-08	10129	72537606	8657604	601	114936											
LLGL2	3993	broad.mit.edu	37	chr17	73559406	73559406	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgtccctctcctcttcctCcatagcaactggagaacatc	5	16	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73559406	T	T	73559406	1	4	126	0	1	0	0	0	0	0	0	0	8908	870	30	4		4	LLGL2	17	73559406	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1021800	73559406	7635804	602	114937											
RECQL5	9400	broad.mit.edu	37	chr17	73657631	73657631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgtaaagaacaagagaCcagctaagaagcctctgagg	11	8	2	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73657631	A	A	73657631	1	1	126	0	1	0	0	0	0	0	0	0	13311	522	18	3		3	RECQL5	17	73657631	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	98225	73657631	7537579	603	114938											
CCDC40	55036	broad.mit.edu	37	chr17	78023992	78023992	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accgccacgcaatggcctcgAgcgagcgcaggcagaaggag	15	13	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78023992	T	T	78023992	3	4	126	1	0	0	0	0	1	0	0	0	2839	304	11	5	1095	5	CCDC40	17	78023992	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	4366361	78023992	3171218	604	114939											
NOTUM	147111	broad.mit.edu	37	chr17	79910771	79910771	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggcctgctggtggggggTgaggtggcactggggcagcg	24	7	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79910771	G	G	79910771	1	3	126	0	1	0	0	0	0	0	0	0	10647	1711	59	5		5	NOTUM	17	79910771	3'UTR	SNP	T	TCGA-44-6774-01A-21D-1855-08	1886779	79910771	1284439	605	114940											
TAF4B	6875	broad.mit.edu	37	chr18	23807085	23807085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggcgtcccagcccctgcGgtcccccgtggggaccctgg	14	19	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23807085	T	T	23807085	3	4	126	1	0	0	0	0	1	0	0	0	15646	1116	39	1	190	1	TAF4B	18	23807085	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08		23807085	54270163	606	114941											
TTR	7276	broad.mit.edu	37	chr18	29178553	29178553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtattcacagccaacgactCcggcccccgccgctacacca	8	19	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29178553	A	A	29178553	3	1	126	1	0	0	0	0	1	0	0	0	16864	855	30	3	373	3	TTR	18	29178553	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	5371468	29178553	48898695	607	114942											
ASXL3	80816	broad.mit.edu	37	chr18	31323602	31323602	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgataaatcctctgtcCtaatgtctgttgacagtgca	8	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31323602	G	G	31323602	3	3	126	1	0	0	0	0	1	0	0	0	1072	680	24	4	3836	4	ASXL3	18	31323602	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2145049	31323602	46753646	608	114943											
ZNF397	84307	broad.mit.edu	37	chr18	32822650	32822650	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggctctgagccgactccaGgaactttgctatcagtggct	12	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32822650	C	C	32822650	3	2	126	1	0	0	0	0	1	0	0	0	18010	991	35	4	218	4	ZNF397	18	32822650	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1499048	32822650	45254598	609	114944											
CELF4	56853	broad.mit.edu	37	chr18	34850768	34850768	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattggcgaacacagcttcCgcagcaggttgcccattggc	11	14	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34850768	A	A	34850768	2	1	126	1	0	0	0	0	0	0	0	1	3248	639	23	1		1	CELF4	18	34850768	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	2028118	34850768	43226480	610	114945											
SYT4	6860	broad.mit.edu	37	chr18	40853633	40853633	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaattagaacttccccaAtgatatcatctcttgaaaac	6	9	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853633	T	T	40853633	3	4	126	1	0	0	0	0	1	0	0	0	15595	101	4	5	528	5	SYT4	18	40853633	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	6002865	40853633	37223615	611	114946											
DCC	1630	broad.mit.edu	37	chr18	50929287	50929287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatctccactttctctccCagcatagctctcccttgtcc	4	18	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50929287	A	A	50929287	1	1	126	0	1	0	0	0	0	0	0	0	4315	609	21	2		2	DCC	18	50929287	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	10075654	50929287	27147961	612	114947											
PHLPP1	23239	broad.mit.edu	37	chr18	60642601	60642601	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcactgatgggctgtgtttGagtgtcaccccctctcttcg	12	12	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60642601	T	T	60642601	1	4	126	0	1	0	0	0	0	0	0	0	11949	1305	45	3		3	PHLPP1	18	60642601	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	9713314	60642601	17434647	613	114948											
SERPINB5	5268	broad.mit.edu	37	chr18	61166417	61166417	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatgggaaacattgacaGtatcaattgtaagatcatag	9	5	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61166417	A	A	61166417	3	1	126	1	0	0	0	0	1	0	0	0	14217	1029	36	4	650	4	SERPINB5	18	61166417	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	523816	61166417	16910831	614	114949											
SERPINB13	5275	broad.mit.edu	37	chr18	61259614	61259614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagcagtacatcaacaattCcaaaagtttttgactgaaat	6	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61259614	A	A	61259614	3	1	126	1	0	0	0	0	1	0	0	0	14213	854	30	3	268	3	SERPINB13	18	61259614	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	93197	61259614	16817634	615	114950											
RTTN	25914	broad.mit.edu	37	chr18	67696066	67696066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaagcagttgaaaactGtgaatgcaacagcatacttc	7	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67696066	A	A	67696066	1	1	126	0	1	0	0	0	0	0	0	0	13848	1392	48	4		4	RTTN	18	67696066	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	6436452	67696066	10381182	616	114951											
RTTN	25914	broad.mit.edu	37	chr18	67872934	67872934	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgccggagaattaaactgCcgcgccactgcgtccagcca	11	16	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67872934	T	T	67872934	1	4	126	0	1	0	0	0	0	0	0	0	13848	754	26	4		4	RTTN	18	67872934	5'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	176868	67872934	10204314	617	114952											
SOCS6	9306	broad.mit.edu	37	chr18	67992886	67992886	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatccaaaggaacttcagtGgactcactggcacagaagcc	9	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67992886	T	T	67992886	4	4	126	1	0	0	0	0	0	1	0	0	15032	1349	47	2	984	2	SOCS6	18	67992886	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	119952	67992886	10084362	618	114953											
ATP8B3	148229	broad.mit.edu	37	chr19	1796145	1796145	+	Frame_Shift_Del	DEL	C	-	-													gacctggtagacccgttcctCccccagctccatgatcgtga							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1796145	-	-	1796145	7	5	126	1	0	1	0	1	0	0	0	0	1200	864	30	0	2111	0	ATP8B3	19	1796145	Frame_Shift_Del	DEL	C	TCGA-44-6774-01A-21D-1855-08		1796145	57332838	619	114954											
ZNF555	148254	broad.mit.edu	37	chr19	2852695	2852695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgggaaaacctttcctcGtacttcctccctcaatcggc	7	14	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2852695	T	T	2852695	3	4	126	1	0	0	0	0	1	0	0	0	18113	1145	40	3	646	3	ZNF555	19	2852695	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1056550	2852695	56276288	620	114955											
ZNF558	148156	broad.mit.edu	37	chr19	8932670	8932670	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatttgggaaaaggaacatCtgactcacccgtagccagct	10	10	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8932670	G	G	8932670	1	3	126	0	1	0	0	0	0	0	0	0	18116	928	32	4		4	ZNF558	19	8932670	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	6079975	8932670	50196313	621	114956											
MUC16	94025	broad.mit.edu	37	chr19	9061138	9061138	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagtagaaattctagtgaTggtttccgtggagatttctg	14	4	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9061138	C	C	9061138	3	2	126	1	0	0	0	0	1	0	0	0	10067	1464	51	5	17543	5	MUC16	19	9061138	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	128468	9061138	50067845	622	114957											
MUC16	94025	broad.mit.edu	37	chr19	9074617	9074617	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcccccatgatgtgggaggTaaccaatggagatgtggctt	14	8	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9074617	A	A	9074617	3	1	126	1	0	0	0	0	1	0	0	0	10067	1638	57	5	31022	5	MUC16	19	9074617	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	13479	9074617	50054366	623	114958											
RAVER1	125950	broad.mit.edu	37	chr19	10444193	10444193	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgccgccatcttgggaaaCccggcgccttctgggaccag	12	16	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10444193	T	T	10444193	2	4	126	1	0	0	0	0	0	0	0	1	13202	494	18	4		4	RAVER1	19	10444193	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	1369576	10444193	48684790	624	114959											
SLC1A6	6511	broad.mit.edu	37	chr19	15063936	15063936	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggcgatgaggaagagagaGgaaaaggacagagagaaggg	19	2	0	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15063936	C	C	15063936	1	2	126	0	1	0	0	0	0	0	0	0	14549	1015	35	4		4	SLC1A6	19	15063936	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	4619743	15063936	44065047	625	114960											
SLC1A6	6511	broad.mit.edu	37	chr19	15075016	15075016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagactcctcaagaacccctGcccattgctctgtcaggccc	7	17	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15075016	T	T	15075016	1	4	126	0	1	0	0	0	0	0	0	0	14549	1334	46	3		3	SLC1A6	19	15075016	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	11080	15075016	44053967	626	114961											
EPS15L1	58513	broad.mit.edu	37	chr19	16552855	16552855	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagcaggtgaagtggcAcccgccacgctaactatccg	12	14	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16552855	C	C	16552855	1	2	126	0	1	0	0	0	0	0	0	0	5235	174	6	5		5	EPS15L1	19	16552855	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	1477839	16552855	42576128	627	114962											
RHPN2	85415	broad.mit.edu	37	chr19	33517251	33517251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatcccttccagtctagCacctcactcaaccccaaacc	3	20	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33517251	A	A	33517251	1	1	126	0	1	0	0	0	0	0	0	0	13460	725	25	3		3	RHPN2	19	33517251	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	16964396	33517251	25611732	628	114963											
FFAR2	2867	broad.mit.edu	37	chr19	35941665	35941665	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggagctgggaagcctgGgagaggcggagcaggaaggc	20	8	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35941665	T	T	35941665	1	4	126	0	1	0	0	0	0	0	0	0	5885	1247	43	2		2	FFAR2	19	35941665	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	2424414	35941665	23187318	629	114964											
NPHS1	4868	broad.mit.edu	37	chr19	36340098	36340098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggactggctcccagaccCcactgtccccccattcccca	6	21	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36340098	A	A	36340098	1	1	126	0	1	0	0	0	0	0	0	0	10677	638	22	2		2	NPHS1	19	36340098	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	398433	36340098	22788885	630	114965											
HCST	10870	broad.mit.edu	37	chr19	36394175	36394175	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgctgggatgacaggcgtGagccacggtgccaggctgag	18	9	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36394175	T	T	36394175	1	4	126	0	1	0	0	0	0	0	0	0	7070	1305	45	3		3	HCST	19	36394175	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	54077	36394175	22734808	631	114966											
ZNF260	339324	broad.mit.edu	37	chr19	37005408	37005408	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttacacgtataaggtttctCtcctgtgtgacttctctggt	8	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37005408	A	A	37005408	4	1	126	1	0	0	0	0	0	1	0	0	17928	922	32	3	509	3	ZNF260	19	37005408	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	611233	37005408	22123575	632	114967											
ZNF793	390927	broad.mit.edu	37	chr19	38028034	38028034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattggttttaagagaaaCtgtgcaaaaaagcaagatga	10	3	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38028034	A	A	38028034	3	1	126	1	0	0	0	0	1	0	0	0	18294	564	20	3	488	3	ZNF793	19	38028034	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1022626	38028034	21100949	633	114968											
RYR1	6261	broad.mit.edu	37	chr19	38946065	38946065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagatccccagtcctattGgatctgacacctcttccccc	5	19	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38946065	T	T	38946065	1	4	126	0	1	0	0	0	0	0	0	0	13879	1363	47	2		2	RYR1	19	38946065	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	918031	38946065	20182918	634	114969											
PAPL	390928	broad.mit.edu	37	chr19	39592064	39592064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaggcccaggcatggcCtcgagtgactgcctgccacc	12	15	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39592064	A	A	39592064	1	1	126	0	1	0	0	0	0	0	0	0	11521	696	24	2		2	PAPL	19	39592064	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	645999	39592064	19536919	635	114970											
ZFP36	7538	broad.mit.edu	37	chr19	39898874	39898874	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaccctagcgaagacctGgcggccccgggccaccctcc	10	20	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39898874	A	A	39898874	2	1	126	1	0	0	0	0	0	0	0	1	17771	1335	47	4		4	ZFP36	19	39898874	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	306810	39898874	19230109	636	114971											
FCGBP	8857	broad.mit.edu	37	chr19	40395895	40395895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgactcgcccattacccCaggccacgttctcctgcagg	8	18	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40395895	A	A	40395895	3	1	126	1	0	0	0	0	1	0	0	0	5835	595	21	2	8803	2	FCGBP	19	40395895	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	497021	40395895	18733088	637	114972											
ZNF546	339327	broad.mit.edu	37	chr19	40520110	40520110	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtgggaaagcctttagTcgtgttagagaccttagagt	13	5	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40520110	A	A	40520110	3	1	126	1	0	0	0	0	1	0	0	0	18105	1664	58	5	951	5	ZNF546	19	40520110	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	124215	40520110	18608873	638	114973											
PLAUR	5329	broad.mit.edu	37	chr19	44159543	44159543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagctgtctgcctgagtgCatgcccctgcccgaccccag	11	18	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44159543	A	A	44159543	1	1	126	0	1	0	0	0	0	0	0	0	12118	725	25	3		3	PLAUR	19	44159543	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3639433	44159543	14969440	639	114974											
KCNN4	3783	broad.mit.edu	37	chr19	44285050	44285050	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcagccagcttcctgcCcagggtcccccacctcgcag	11	19	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44285050	A	A	44285050	1	1	126	0	1	0	0	0	0	0	0	0	8151	638	22	2		2	KCNN4	19	44285050	5'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	125507	44285050	14843933	640	114975											
APOC4	346	broad.mit.edu	37	chr19	45448463	45448463	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgagggacctgggtccGctcaccaaggcctggttcct	12	15	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45448463	A	A	45448463	2	1	126	1	0	0	0	0	0	0	0	1	802	1074	38	4		4	APOC4	19	45448463	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1163413	45448463	13680520	641	114976											
ERCC2	2068	broad.mit.edu	37	chr19	45873524	45873524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgggtcagttcccgtcCcctcagcccctctcccgcct	8	21	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45873524	T	T	45873524	1	4	126	0	1	0	0	0	0	0	0	0	5255	638	22	4		4	ERCC2	19	45873524	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	425061	45873524	13255459	642	114977											
SLC6A16	28968	broad.mit.edu	37	chr19	49812162	49812162	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcgatgtgtgatgactgtCgcccagaagcccaggacaca	12	12	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49812162	A	A	49812162	2	1	126	1	0	0	0	0	0	0	0	1	14793	871	31	3		3	SLC6A16	19	49812162	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	3938638	49812162	9316821	643	114978											
RPS11	6205	broad.mit.edu	37	chr19	50001381	50001381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcggaccaatttaaggcCaactgagggagggaaagact	13	7	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50001381	A	A	50001381	1	1	126	0	1	0	0	0	0	0	0	0	13732	609	21	2		2	RPS11	19	50001381	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	189219	50001381	9127602	644	114979											
FUZ	80199	broad.mit.edu	37	chr19	50314895	50314895	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaacctcaccctcaagTccttcttcagtctctccacg	4	19	5	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50314895	G	G	50314895	3	3	126	1	0	0	0	0	1	0	0	0	6172	1667	58	5	908	5	FUZ	19	50314895	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	313514	50314895	8814088	645	114980											
SHANK1	50944	broad.mit.edu	37	chr19	51215272	51215272	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgttgaacaggagcagctCgcagcatcgggggtcaccac	13	13	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51215272	A	A	51215272	4	1	126	1	0	0	0	0	0	1	0	0	14377	893	31	3	5665	3	SHANK1	19	51215272	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	900377	51215272	7913711	646	114981											
ZNF577	84765	broad.mit.edu	37	chr19	52376255	52376255	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaaaggctttttcacactCactacattcataaggtttct	4	10	5	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52376255	A	A	52376255	4	1	126	1	0	0	0	0	0	1	0	0	18136	835	29	3	473	3	ZNF577	19	52376255	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1160983	52376255	6752728	647	114982											
ZNF534	147658	broad.mit.edu	37	chr19	52937105	52937105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaatgtggatttggcgcaGtgctcgcttcagtggagtga	14	6	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52937105	T	T	52937105	1	4	126	0	1	0	0	0	0	0	0	0	18100	1044	36	3		3	ZNF534	19	52937105	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	560850	52937105	6191878	648	114983											
BIRC8	112401	broad.mit.edu	37	chr19	53793473	53793473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgttcccaaggatcttccTtgggcttccagttggctagc	11	12	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53793473	A	A	53793473	3	1	126	1	0	0	0	0	1	0	0	0	1446	1609	56	5	559	5	BIRC8	19	53793473	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	856368	53793473	5335510	649	114984											
NLRP12	91662	broad.mit.edu	37	chr19	54310879	54310879	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgcacagggccgctgccaGatgttcactgtaggcgtcca	14	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54310879	C	C	54310879	3	2	126	1	0	0	0	0	1	0	0	0	10569	933	33	4	1196	4	NLRP12	19	54310879	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	517406	54310879	4818104	650	114985											
CNOT3	4849	broad.mit.edu	37	chr19	54647235	54647235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgaggctgacctaaagaagGagattaagaagctacaagtg	12	5	0	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54647235	A	A	54647235	3	1	126	1	0	0	0	0	1	0	0	0	3652	1175	41	4	161	4	CNOT3	19	54647235	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	336356	54647235	4481748	651	114986											
TNNT1	7138	broad.mit.edu	37	chr19	55652219	55652220	+	Intron	INS	-	T	T													atccggctgaagaagtaacaINStttgggctctcagggcaggg							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55652220	T	T	55652219	6	5	126	0	1	1	1	0	0	0	0	0	16453	232	8	0		0	TNNT1	19	55652219	Intron	INS	-	TCGA-44-6774-01A-21D-1855-08	1004984	55652219	3476764	652	114987											
NLRP8	126205	broad.mit.edu	37	chr19	56477416	56477416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgaataatcacaggtttGtgtcactctttaatgtctgc	7	9	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56477416	T	T	56477416	1	4	126	0	1	0	0	0	0	0	0	0	10578	1392	48	3		3	NLRP8	19	56477416	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	825197	56477416	2651567	653	114988											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56704299	56704299	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaattcatgtgccaagtCtcagggttcctgtcgtgatt	10	9	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56704299	A	A	56704299	3	1	126	1	0	0	0	0	1	0	0	0	18368	912	32	3	1380	3	ZSCAN5B	19	56704299	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	226883	56704299	2424684	654	114989											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56734248	56734248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgcagacttcccctggacCaccccatcaccccacgtaaa	6	19	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56734248	A	A	56734248	1	1	126	0	1	0	0	0	0	0	0	0	18367	609	21	2		2	ZSCAN5A	19	56734248	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	29949	56734248	2394735	655	114990											
NRSN2	80023	broad.mit.edu	37	chr20	333742	333742	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctgtgattcccatctccTgaggatggatcaaggggtta	12	8	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	333742	C	C	333742	1	2	126	0	1	0	0	0	0	0	0	0	10758	1595	55	5		5	NRSN2	20	333742	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08		333742	62691778	656	114991											
SIRPA	140885	broad.mit.edu	37	chr20	1895886	1895886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggttcagaggagctggacCaggccgggaattaatctaca	14	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1895886	A	A	1895886	3	1	126	1	0	0	0	0	1	0	0	0	14445	594	21	2	227	2	SIRPA	20	1895886	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1562144	1895886	61129634	657	114992											
TGM3	7053	broad.mit.edu	37	chr20	2315719	2315719	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaaggttcagaagccaTccccactccccctcactcgg	9	16	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2315719	A	A	2315719	1	1	126	0	1	0	0	0	0	0	0	0	15954	1450	50	5		5	TGM3	20	2315719	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	419833	2315719	60709801	658	114993											
ZNF343	79175	broad.mit.edu	37	chr20	2464342	2464342	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctggtgtttgatgagatctGagttctggctaaagcctcgc	12	8	3	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2464342	T	T	2464342	4	4	126	1	0	0	0	0	0	1	0	0	17984	1294	45	3	538	3	ZNF343	20	2464342	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	148623	2464342	60561178	659	114994											
FAM113A	64773	broad.mit.edu	37	chr20	2815990	2815990	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttcttccatgcctttattGgtgacagcaatggacaagaa	9	8	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2815990	C	C	2815990	1	2	126	0	1	0	0	0	0	0	0	0	5447	1363	47	4		4	FAM113A	20	2815990	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	351648	2815990	60209530	660	114995											
MCM8	84515	broad.mit.edu	37	chr20	5958578	5958578	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtaacaccacgaccacCtctggtctgacggtaactct	9	13	3	1	rs113442872	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5958578	T	T	5958578	2	4	126	1	0	0	0	0	0	0	0	1	9486	668	24	4		4	MCM8	20	5958578	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	3142588	5958578	57066942	661	114996											
PLCB4	5332	broad.mit.edu	37	chr20	9374320	9374320	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggctgaaacctgaagttgAaaaaagtaagtgaaacacac	10	7	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9374320	T	T	9374320	3	4	126	1	0	0	0	0	1	0	0	0	12125	246	9	5	1467	5	PLCB4	20	9374320	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	3415742	9374320	53651200	662	114997											
PLCB4	5332	broad.mit.edu	37	chr20	9438112	9438112	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagaaatcaaaattcagacGctgacatcagatcacaaatc	5	10	4	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9438112	C	C	9438112	2	2	126	1	0	0	0	0	0	0	0	1	12125	1074	38	4		4	PLCB4	20	9438112	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	63792	9438112	53587408	663	114998											
TASP1	55617	broad.mit.edu	37	chr20	13514864	13514864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgactacatagcacttttcCatacaatcatgacagaacaa	4	10	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13514864	A	A	13514864	1	1	126	0	1	0	0	0	0	0	0	0	15708	609	21	2		2	TASP1	20	13514864	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	4076752	13514864	49510656	664	114999											
SEL1L2	80343	broad.mit.edu	37	chr20	13846176	13846176	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaagctgtacatgagaggaGaaatcaaggagactagttag	12	4	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13846176	A	A	13846176	1	1	126	0	1	0	0	0	0	0	0	0	14124	957	33	4		4	SEL1L2	20	13846176	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	331312	13846176	49179344	665	115000											
KIF16B	55614	broad.mit.edu	37	chr20	16352333	16352333	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcgtgtctgcagatgtacTgcagccttcactaatcacac	7	13	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16352333	A	A	16352333	3	1	126	1	0	0	0	0	1	0	0	0	8348	1580	55	5	553	5	KIF16B	20	16352333	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	2506157	16352333	46673187	666	115001											
ZNF133	7692	broad.mit.edu	37	chr20	18297153	18297153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagccctacatgtgcaGgcagtgtggactgggctttg	16	8	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18297153	T	T	18297153	3	4	126	1	0	0	0	0	1	0	0	0	17849	1000	35	2	1665	2	ZNF133	20	18297153	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1944820	18297153	44728367	667	115002											
CST1	1469	broad.mit.edu	37	chr20	23731257	23731257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggacccaggacccctgGggtggagggagcacctacct	16	13	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23731257	T	T	23731257	1	4	126	0	1	0	0	0	0	0	0	0	4004	1247	43	2		2	CST1	20	23731257	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	5434104	23731257	39294263	668	115003											
MYLK2	85366	broad.mit.edu	37	chr20	30421684	30421684	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggccagaaaaggcagCcagatccccagggcagcctc	12	14	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30421684	A	A	30421684	1	1	126	0	1	0	0	0	0	0	0	0	10151	754	26	3		3	MYLK2	20	30421684	3'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	6690427	30421684	32603836	669	115004											
GSS	2937	broad.mit.edu	37	chr20	33539721	33539721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgaagcccagcaaccacCgaaactggctggcggccacc	11	17	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33539721	A	A	33539721	1	1	126	0	1	0	0	0	0	0	0	0	6895	667	23	1		1	GSS	20	33539721	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3118037	33539721	29485799	670	115005											
PTPRT	11122	broad.mit.edu	37	chr20	41306576	41306576	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccctcacctggtcgtgtgagGagcactcggatctcatactc	10	14	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41306576	C	C	41306576	2	2	126	1	0	0	0	0	0	0	0	1	12920	1161	41	4		4	PTPRT	20	41306576	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	7766855	41306576	21718944	671	115006											
JPH2	57158	broad.mit.edu	37	chr20	42815287	42815288	+	Missense_Mutation	DNP	CC	AA	AA													catgcccatgggcctttcccCcctcccagcccccgcagtac							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	42815288	AA	AA	42815287	3	1	126	1	0	0	0	0	1	0	0	0	8031	623	22	2	2066	2	JPH2	20	42815287	Missense_Mutation	DNP	CC	TCGA-44-6774-01A-21D-1855-08	1508711	42815287	20210233	672	115007											
SYS1	90196	broad.mit.edu	37	chr20	44004245	44004245	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaccgaggccctggttccCgagacagttgctatgtagcc	13	12	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44004245	A	A	44004245	1	1	126	0	1	0	0	0	0	0	0	0	15583	667	23	1		1	SYS1	20	44004245	3'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	1188958	44004245	19021275	673	115008											
EYA2	2139	broad.mit.edu	37	chr20	45633640	45633640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcagcctacggccagaCgcagtacagtgcggggatcc	14	13	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45633640	A	A	45633640	3	1	126	1	0	0	0	0	1	0	0	0	5372	536	19	3	225	3	EYA2	20	45633640	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1629395	45633640	17391880	674	115009											
SNAI1	6615	broad.mit.edu	37	chr20	48600678	48600678	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttcccaggcttgggcCaagtgcccaagcagctggcc	12	16	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48600678	T	T	48600678	4	4	126	1	0	0	0	0	0	1	0	0	14940	595	21	4	406	4	SNAI1	20	48600678	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2967038	48600678	14424842	675	115010											
TSHZ2	128553	broad.mit.edu	37	chr20	51871779	51871780	+	Missense_Mutation	DNP	GG	AT	AT													gtttctatgcccacacacctGgccccttacactcaagtcaa							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	51871780	AT	AT	51871779	3	1	126	1	0	0	0	0	1	0	0	0	16749	1335	47	4	1788	4	TSHZ2	20	51871779	Missense_Mutation	DNP	GG	TCGA-44-6774-01A-21D-1855-08	3271101	51871779	11153741	676	115011											
ZBP1	81030	broad.mit.edu	37	chr20	56185428	56185428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagtggcagagactgtGggtcaaagggagagaggcct	18	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56185428	T	T	56185428	1	4	126	0	1	0	0	0	0	0	0	0	17647	1363	47	2		2	ZBP1	20	56185428	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	4313649	56185428	6840092	677	115012											
DIDO1	11083	broad.mit.edu	37	chr20	61525033	61525033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcacctgatatttggtgacGgaggaactgacaggtatctt	12	8	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61525033	T	T	61525033	3	4	126	1	0	0	0	0	1	0	0	0	4562	1116	39	1	3685	1	DIDO1	20	61525033	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	5339605	61525033	1500487	678	115013											
DIDO1	11083	broad.mit.edu	37	chr20	61528277	61528277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgcccaccgcggagcCtggaggggctgttttctttg	14	12	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61528277	A	A	61528277	3	1	126	1	0	0	0	0	1	0	0	0	4562	681	24	2	5131	2	DIDO1	20	61528277	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	3244	61528277	1497243	679	115014											
COL20A1	57642	broad.mit.edu	37	chr20	61956760	61956760	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgccctgtgccccctcCgcttcgctgtccagcccatc	7	22	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61956760	T	T	61956760	1	4	126	0	1	0	0	0	0	0	0	0	3711	667	23	4		4	COL20A1	20	61956760	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	428483	61956760	1068760	680	115015											
EEF1A2	1917	broad.mit.edu	37	chr20	62120253	62120253	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggggctgcacctcccCggaccaccccggctcaccga	12	20	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62120253	T	T	62120253	1	4	126	0	1	0	0	0	0	0	0	0	4964	667	23	4		4	EEF1A2	20	62120253	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	163493	62120253	905267	681	115016											
RTEL1	51750	broad.mit.edu	37	chr20	62292695	62292695	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctacgggtacagggaagacGctgtgcctgctgtgcaccac	13	13	0	1	rs114124243	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62292695	C	C	62292695	2	2	126	1	0	0	0	0	0	0	0	1	13831	1074	38	4		4	RTEL1	20	62292695	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	172442	62292695	732825	682	115017											
NPBWR2	2832	broad.mit.edu	37	chr20	62737418	62737418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaggacggtcaccttcCgcctggccttgcctagagcc	12	16	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62737418	A	A	62737418	3	1	126	1	0	0	0	0	1	0	0	0	10664	652	23	1	237	1	NPBWR2	20	62737418	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	444723	62737418	288102	683	115018											
BAGE2	85319	broad.mit.edu	37	chr21	11029638	11029638	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgccaggaagctgcctgGgtttaaaaatttcccgacct	9	12	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11029638	T	T	11029638	1	4	126	0	1	0	0	0	0	0	0	0	1297	1247	43	2		2	BAGE2	21	11029638	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08		11029638	37100257	684	115019											
BAGE2	85319	broad.mit.edu	37	chr21	11029707	11029707	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcactgtattatgggtaCtccaagcctcctaagatatg	9	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11029707	A	A	11029707	1	1	126	0	1	0	0	0	0	0	0	0	1297	580	20	3		3	BAGE2	21	11029707	3'UTR	SNP	C	TCGA-44-6774-01A-21D-1855-08	69	11029707	37100188	685	115020											
LIPI	149998	broad.mit.edu	37	chr21	15561488	15561488	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatatcttcttcattcagcAaaatccttacgaagttctga	4	10	6	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15561488	T	T	15561488	4	4	126	1	0	0	0	0	0	1	0	0	8898	131	5	5	1119	5	LIPI	21	15561488	Nonsense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	4531781	15561488	32568407	686	115021											
SAMSN1	64092	broad.mit.edu	37	chr21	15872992	15872992	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgaagtttcccactttaTtgttcaacattcctgtccac	4	11	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15872992	C	C	15872992	3	2	126	1	0	0	0	0	1	0	0	0	13941	1493	52	5	507	5	SAMSN1	21	15872992	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	311504	15872992	32256903	687	115022											
SAMSN1	64092	broad.mit.edu	37	chr21	15885049	15885049	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcatcttcagttcaatttCtagcaaaacctttcacaata	3	10	6	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15885049	A	A	15885049	1	1	126	0	1	0	0	0	0	0	0	0	13941	928	32	3		3	SAMSN1	21	15885049	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	12057	15885049	32244846	688	115023											
CYYR1	116159	broad.mit.edu	37	chr21	27945291	27945291	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaggcttggagcgaagGgagagcccggaaccggaggg	20	9	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27945291	A	A	27945291	1	1	126	0	1	0	0	0	0	0	0	0	4244	1247	43	4		4	CYYR1	21	27945291	5'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	12060242	27945291	20184604	689	115024											
USP16	10600	broad.mit.edu	37	chr21	30403014	30403014	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgccaagactgtaagactGacaataaagtgaaagataaa	8	6	1	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30403014	T	T	30403014	3	4	126	1	0	0	0	0	1	0	0	0	17173	1290	45	3	166	3	USP16	21	30403014	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2457723	30403014	17726881	690	115025											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31812741	31812741	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tataatttgttctaccccagCaatgccatctattctccaaa	3	12	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31812741	G	G	31812741	3	3	126	1	0	0	0	0	1	0	0	0	8597	709	25	4	98	4	KRTAP15-1	21	31812741	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1409727	31812741	16317154	691	115026											
PDXK	8566	broad.mit.edu	37	chr21	45175689	45175689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgtgggctcctggctccCgaagtgggtgggagagaaga	18	9	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45175689	A	A	45175689	1	1	126	0	1	0	0	0	0	0	0	0	11791	667	23	1		1	PDXK	21	45175689	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	13362948	45175689	2954206	692	115027											
TRPM2	7226	broad.mit.edu	37	chr21	45834003	45834003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgggtgggtgggcggCgttcctgggccgcagtggcc	22	10	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45834003	A	A	45834003	1	1	126	0	1	0	0	0	0	0	0	0	16711	783	27	3		3	TRPM2	21	45834003	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	658314	45834003	2295892	693	115028											
COL6A2	1292	broad.mit.edu	37	chr21	47532527	47532527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaccgtccacgcgccagGggtggccacggtgggccgtc	17	15	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47532527	T	T	47532527	1	4	126	0	1	0	0	0	0	0	0	0	3732	1247	43	2		2	COL6A2	21	47532527	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1698524	47532527	597368	694	115029											
PCNT	5116	broad.mit.edu	37	chr21	47783460	47783460	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctaagcaaaagactgagctGatgaaacaggaattccaaag	10	7	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47783460	A	A	47783460	2	1	126	1	0	0	0	0	0	0	0	1	11684	1277	45	4		4	PCNT	21	47783460	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	250933	47783460	346435	695	115030											
MED15	51586	broad.mit.edu	37	chr22	20922826	20922826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccgagctccgatggtgGtgcagcagcccccagtgcag	15	13	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20922826	T	T	20922826	3	4	126	1	0	0	0	0	1	0	0	0	9526	1261	44	3	1090	3	MED15	22	20922826	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08		20922826	30381740	696	115031											
PI4KA	5297	broad.mit.edu	37	chr22	21178643	21178643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgaaggatccctataggCcacatcagacagcagagtta	10	9	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21178643	A	A	21178643	3	1	126	1	0	0	0	0	1	0	0	0	11968	739	26	3	6089	3	PI4KA	22	21178643	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	255817	21178643	30125923	697	115032											
LZTR1	8216	broad.mit.edu	37	chr22	21343151	21343151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatctttgctggctatgacGgcaacgccaggtgggtggtg	17	8	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21343151	T	T	21343151	3	4	126	1	0	0	0	0	1	0	0	0	9225	1116	39	1	605	1	LZTR1	22	21343151	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	164508	21343151	29961415	698	115033											
ADRBK2	157	broad.mit.edu	37	chr22	26118377	26118377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggtactgtggagctccCaaagccatccctctgtcaca	9	14	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26118377	A	A	26118377	3	1	126	1	0	0	0	0	1	0	0	0	344	594	21	2	2109	2	ADRBK2	22	26118377	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4775226	26118377	25186189	699	115034											
MYO18B	84700	broad.mit.edu	37	chr22	26166186	26166186	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggagggtctgagtcttctCctgtgccccctactgctgcc	11	14	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26166186	A	A	26166186	1	1	126	0	1	0	0	0	0	0	0	0	10160	870	30	3		3	MYO18B	22	26166186	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	47809	26166186	25138380	700	115035											
EWSR1	2130	broad.mit.edu	37	chr22	29664333	29664333	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaaggagagaaaatggcgtCcacgggtgagtatggtggaa	18	4	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29664333	T	T	29664333	3	4	126	1	0	0	0	0	1	0	0	0	5338	855	30	4	10	4	EWSR1	22	29664333	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	3498147	29664333	21640233	701	115036											
AP1B1	162	broad.mit.edu	37	chr22	29737726	29737726	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtagatgtagccacggtcCcgcaggtctgggttatctga	13	10	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29737726	A	A	29737726	2	1	126	1	0	0	0	0	0	0	0	1	733	610	22	2		2	AP1B1	22	29737726	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	73393	29737726	21566840	702	115037											
SEC14L3	266629	broad.mit.edu	37	chr22	30865903	30865903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagactgcaggcctgcgGgttccacaggcctctcaggc	14	13	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30865903	T	T	30865903	1	4	126	0	1	0	0	0	0	0	0	0	14096	1247	43	2		2	SEC14L3	22	30865903	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1128177	30865903	20438663	703	115038											
DEPDC5	9681	broad.mit.edu	37	chr22	32232953	32232953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttccccctgttacgtgaGgcagttctgacactgtctgc	9	13	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32232953	T	T	32232953	1	4	126	0	1	0	0	0	0	0	0	0	4482	1015	35	2		2	DEPDC5	22	32232953	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1367050	32232953	19071613	704	115039											
C22orf42	150297	broad.mit.edu	37	chr22	32554930	32554930	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgggggcggtggtggccaGagagatgccagagagcaaat	20	6	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32554930	T	T	32554930	1	4	126	0	1	0	0	0	0	0	0	0	2171	957	33	3		3	C22orf42	22	32554930	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	321977	32554930	18749636	705	115040											
SYN3	8224	broad.mit.edu	37	chr22	33260992	33260992	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttaatgagctgagagaaCtaggatagaagaggagagaa	13	3	1	6			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33260992	A	A	33260992	5	1	126	1	0	0	0	0	0	0	1	0	15561	579	20	3	1157	3	SYN3	22	33260992	Splice_Site	SNP	C	TCGA-44-6774-01A-21D-1855-08	706062	33260992	18043574	706	115041											
APOL4	80832	broad.mit.edu	37	chr22	36587606	36587606	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttgtgtatgtgttctccacGatgctggaggcgatcccagc	12	11	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36587606	C	C	36587606	3	2	126	1	0	0	0	0	1	0	0	0	810	1058	37	4	486	4	APOL4	22	36587606	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	3326614	36587606	14716960	707	115042											
CBX6	23466	broad.mit.edu	37	chr22	39262426	39262426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccggcgggctcaggggCcgtgggaggtgccgggccgg	23	12	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39262426	A	A	39262426	3	1	126	1	0	0	0	0	1	0	0	0	2748	739	26	3	215	3	CBX6	22	39262426	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2674820	39262426	12042140	708	115043											
MPPED1	758	broad.mit.edu	37	chr22	43821177	43821177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccttcaccttctacaaCatcaaccagggccgcttcca	6	17	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43821177	A	A	43821177	3	1	126	1	0	0	0	0	1	0	0	0	9835	477	17	3	188	3	MPPED1	22	43821177	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4558751	43821177	7483389	709	115044											
FBLN1	2192	broad.mit.edu	37	chr22	45937981	45937981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttctgatcatcttgggGggaaaaaacccaaactaaag	8	9	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45937981	T	T	45937981	1	4	126	0	1	0	0	0	0	0	0	0	5755	1247	43	2		2	FBLN1	22	45937981	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2116804	45937981	5366585	710	115045											
FBLN1	2192	broad.mit.edu	37	chr22	45959084	45959085	+	Intron	DEL	CG	-	-													ccgtcaagatggatctctctCgccacggcaccgtcagctcc							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45959085	-	-	45959084	6	5	126	0	1	1	0	1	0	0	0	0	5755	884	31	0		0	FBLN1	22	45959084	Intron	DEL	CG	TCGA-44-6774-01A-21D-1855-08	21103	45959084	5345482	711	115046											
ALG12	79087	broad.mit.edu	37	chr22	50306919	50306919	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgccacggtgatcgaggGcaggcaagactaacagacag	13	11	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50306919	A	A	50306919	1	1	126	0	1	0	0	0	0	0	0	0	514	1218	42	4		4	ALG12	22	50306919	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	4347835	50306919	997647	712	115047											
SHOX	6473	broad.mit.edu	37	chrX	591557	591557	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggtgatccacccgcgcGcacgggccgtcctctccgcg	13	19	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	591557	T	T	591557	1	4	126	0	1	0	0	0	0	0	0	0	14401	1102	38	3		3	SHOX	23	591557	5'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08		591557	154679003	713	115048											
SHOX	6473	broad.mit.edu	37	chrX	591669	591669	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttgtatccaagtcttttGaccagaaaagcaaggacggt	9	8	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	591669	T	T	591669	3	4	126	1	0	0	0	0	1	0	0	0	14401	1290	45	3	39	3	SHOX	23	591669	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	112	591669	154678891	714	115049											
SHOX	6473	broad.mit.edu	37	chrX	601720	601720	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaccacactgacacctgctCcctttggacacaggcgtcat	7	17	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	601720	A	A	601720	1	1	126	0	1	0	0	0	0	0	0	0	14401	870	30	3		3	SHOX	23	601720	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	10051	601720	154668840	715	115050											
ARSF	416	broad.mit.edu	37	chrX	3002590	3002590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttggttctccagccacaCgtcccctttatactgggact	8	14	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3002590	A	A	3002590	3	1	126	1	0	0	0	0	1	0	0	0	995	536	19	3	731	3	ARSF	23	3002590	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2400870	3002590	152267970	716	115051											
NLGN4X	57502	broad.mit.edu	37	chrX	5821398	5821398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcagtaaagagagccaCcagggttttccgccgcgtct	13	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5821398	A	A	5821398	3	1	126	1	0	0	0	0	1	0	0	0	10559	507	18	3	1137	3	NLGN4X	23	5821398	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2818808	5821398	149449162	717	115052											
ARHGAP6	395	broad.mit.edu	37	chrX	11187823	11187823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctataagagaacagaacaCaaggactgttgttatgtttg	9	6	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11187823	A	A	11187823	1	1	126	0	1	0	0	0	0	0	0	0	889	493	17	3		3	ARHGAP6	23	11187823	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5366425	11187823	144082737	718	115053											
ATXN3L	92552	broad.mit.edu	37	chrX	13337046	13337046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaaatggtgtcgacagcGgcctgtactgtgccttcact	10	11	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13337046	T	T	13337046	2	4	126	1	0	0	0	0	0	0	0	1	1218	1103	39	1		1	ATXN3L	23	13337046	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	2149223	13337046	141933514	719	115054											
EGFL6	25975	broad.mit.edu	37	chrX	13624574	13624574	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacatttggaagctactaCtgcaaatgtcacattggttt	7	8	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13624574	A	A	13624574	4	1	126	1	0	0	0	0	0	1	0	0	5003	576	20	3	619	3	EGFL6	23	13624574	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	287528	13624574	141645986	720	115055											
GLRA2	2742	broad.mit.edu	37	chrX	14548166	14548166	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggatattttccacaagcaAcacagaaacaggaatgaacc	8	10	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14548166	G	G	14548166	1	3	126	0	1	0	0	0	0	0	0	0	6519	58	2	5		5	GLRA2	23	14548166	5'UTR	SNP	A	TCGA-44-6774-01A-21D-1855-08	923592	14548166	140722394	721	115056											
FANCB	2187	broad.mit.edu	37	chrX	14882911	14882911	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatctcagttgcacaaataTgtacataagtcaccacactg	6	10	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14882911	A	A	14882911	3	1	126	1	0	0	0	0	1	0	0	0	5720	1464	51	5	1889	5	FANCB	23	14882911	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	334745	14882911	140387649	722	115057											
MOSPD2	158747	broad.mit.edu	37	chrX	14915215	14915215	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttaaagtctggatcaGggtgaagtatcatgtaaaag	11	5	4	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14915215	T	T	14915215	3	4	126	1	0	0	0	0	1	0	0	0	9810	1000	35	2	350	2	MOSPD2	23	14915215	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	32304	14915215	140355345	723	115058											
ASB11	140456	broad.mit.edu	37	chrX	15306059	15306059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagccgccagatcaagcGcacttttgccctgagcattt	10	12	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15306059	T	T	15306059	3	4	126	1	0	0	0	0	1	0	0	0	1019	1087	38	3	188	3	ASB11	23	15306059	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	390844	15306059	139964501	724	115059											
GPR64	10149	broad.mit.edu	37	chrX	19027777	19027777	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtcttgggccacaaaggtAgttgtgttgaaactactggc	14	7	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19027777	T	T	19027777	2	4	126	1	0	0	0	0	0	0	0	1	6770	407	15	5		5	GPR64	23	19027777	Silent	SNP	A	TCGA-44-6774-01A-21D-1855-08	3721718	19027777	136242783	725	115060											
SH3KBP1	30011	broad.mit.edu	37	chrX	19701923	19701923	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattaagttgaaatcaaatAgaaactgtcgaacatacctt	5	7	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19701923	G	G	19701923	1	3	126	0	1	0	0	0	0	0	0	0	14368	435	15	5		5	SH3KBP1	23	19701923	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	674146	19701923	135568637	726	115061											
KLHL34	257240	broad.mit.edu	37	chrX	21675721	21675721	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcgcgcccgggattcctgGgtgtggctcttgaacagggc	16	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21675721	T	T	21675721	2	4	126	1	0	0	0	0	0	0	0	1	8458	1219	43	2		2	KLHL34	23	21675721	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1973798	21675721	133594839	727	115062											
FAM48B2	170067	broad.mit.edu	37	chrX	24331745	24331745	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggcacctgcccagaaaccTgcccccagggaagcgctacc	11	17	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24331745	C	C	24331745	1	2	126	0	1	0	0	0	0	0	0	0	5625	1595	55	5		5	FAM48B2	23	24331745	5'Flank	SNP	T	TCGA-44-6774-01A-21D-1855-08	2656024	24331745	130938815	728	115063											
MAGEB18	286514	broad.mit.edu	37	chrX	26157298	26157298	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccctgaagcgcttcagGgagccccatccaccaccaat	8	17	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26157298	T	T	26157298	4	4	126	1	0	0	0	0	0	1	0	0	9267	1233	43	2	198	2	MAGEB18	23	26157298	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	1825553	26157298	129113262	729	115064											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29938182	29938182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaaatggaaatggacgtcGacacgccagcgttctccttc	10	11	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29938182	T	T	29938182	3	4	126	1	0	0	0	0	1	0	0	0	7731	1058	37	3	1054	3	IL1RAPL1	23	29938182	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	3780884	29938182	125332378	730	115065											
MAGEB2	4113	broad.mit.edu	37	chrX	30237292	30237292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctcagttcctgggactttCccaggagaaagcttctgatg	11	10	2	2	rs45513291		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30237292	A	A	30237292	3	1	126	1	0	0	0	0	1	0	0	0	9268	855	30	3	597	3	MAGEB2	23	30237292	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	299110	30237292	125033268	731	115066											
DMD	1756	broad.mit.edu	37	chrX	32456306	32456306	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctgagaggcctgtatctGctatacattaatgcaaatta	7	7	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32456306	A	A	32456306	1	1	126	0	1	0	0	0	0	0	0	0	4620	1334	46	4		4	DMD	23	32456306	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	2219014	32456306	122814254	732	115067											
FAM47A	158724	broad.mit.edu	37	chrX	34148514	34148514	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgggggtaaagtcaaacaGattcctgatggattcttcat	10	7	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34148514	A	A	34148514	2	1	126	1	0	0	0	0	0	0	0	1	5620	933	33	4		4	FAM47A	23	34148514	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	1692208	34148514	121122046	733	115068											
CYBB	1536	broad.mit.edu	37	chrX	37655268	37655268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcactggagttgtcatcaCgctgtgcctcatattaatta	7	10	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37655268	A	A	37655268	3	1	126	1	0	0	0	0	1	0	0	0	4166	536	19	3	570	3	CYBB	23	37655268	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	3506754	37655268	117615292	734	115069											
SYTL5	94122	broad.mit.edu	37	chrX	37893284	37893284	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtattctttttattttttcAgtcctccttgactgctttct	4	9	3	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37893284	T	T	37893284	1	4	126	0	1	0	0	0	0	0	0	0	15605	203	7	5		5	SYTL5	23	37893284	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	238016	37893284	117377276	735	115070											
SRPX	8406	broad.mit.edu	37	chrX	38019191	38019191	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttctcaaagtatatgaaGggaaacctctcttgcactgg	8	9	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38019191	A	A	38019191	1	1	126	0	1	0	0	0	0	0	0	0	15282	1015	35	4		4	SRPX	23	38019191	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	125907	38019191	117251369	736	115071											
BCOR	54880	broad.mit.edu	37	chrX	39933626	39933627	+	Missense_Mutation	DNP	GG	TT	TT													gagagctgtgtcccccggcaGgccactggtgaccgccttgg							TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39933627	TT	TT	39933626	3	4	126	1	0	0	0	0	1	0	0	0	1391	991	35	2	4342	2	BCOR	23	39933626	Missense_Mutation	DNP	GG	TCGA-44-6774-01A-21D-1855-08	1914435	39933626	115336934	737	115072											
USP9X	8239	broad.mit.edu	37	chrX	41003923	41003923	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaccattctatttcaaataGaattgattaattagatctgt	4	5	3	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41003923	T	T	41003923	1	4	126	0	1	0	0	0	0	0	0	0	17217	957	33	3		3	USP9X	23	41003923	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1070297	41003923	114266637	738	115073											
SLC9A7	84679	broad.mit.edu	37	chrX	46521949	46521949	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaactggggtgtctcttcTccagcagaaacactgctact	10	11	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46521949	A	A	46521949	1	1	126	0	1	0	0	0	0	0	0	0	14833	1566	54	5		5	SLC9A7	23	46521949	Intron	SNP	T	TCGA-44-6774-01A-21D-1855-08	5518026	46521949	108748611	739	115074											
SLC35A2	7355	broad.mit.edu	37	chrX	48762073	48762073	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacggtgggaagacagctgCggtggtggtggctgcccggg	20	10	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48762073	A	A	48762073	2	1	126	1	0	0	0	0	0	0	0	1	14685	768	27	3		3	SLC35A2	23	48762073	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	2240124	48762073	106508487	740	115075											
FAM120C	54954	broad.mit.edu	37	chrX	54160573	54160573	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggacccaaggggtctcaCaaaccctttggagggcagga	13	11	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54160573	G	G	54160573	1	3	126	0	1	0	0	0	0	0	0	0	5464	493	17	4		4	FAM120C	23	54160573	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5398500	54160573	101109987	741	115076											
TSR2	90121	broad.mit.edu	37	chrX	54466893	54466893	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcgcgagctcttttccgGgctggggtctgcgcggccct	16	13	2	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54466893	T	T	54466893	2	4	126	1	0	0	0	0	0	0	0	1	16790	1219	43	2		2	TSR2	23	54466893	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	306320	54466893	100803667	742	115077											
FGD1	2245	broad.mit.edu	37	chrX	54497808	54497808	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctggctaggggtttcagtCgggggacctgggtctgagcg	19	9	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54497808	A	A	54497808	2	1	126	1	0	0	0	0	0	0	0	1	5889	871	31	3		3	FGD1	23	54497808	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	30915	54497808	100772752	743	115078											
ITIH5L	347365	broad.mit.edu	37	chrX	54815108	54815108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtggggaggatcggggcGgggtggtacagaggactcgc	23	6	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54815108	T	T	54815108	1	4	126	0	1	0	0	0	0	0	0	0	7978	1131	39	1		1	ITIH5L	23	54815108	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	317300	54815108	100455452	744	115079											
USP51	158880	broad.mit.edu	37	chrX	55513306	55513306	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagagtaagtcctcaatGgtagccttggtgatgatggc	13	7	1	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55513306	A	A	55513306	2	1	126	1	0	0	0	0	0	0	0	1	17210	1335	47	4		4	USP51	23	55513306	Silent	SNP	G	TCGA-44-6774-01A-21D-1855-08	698198	55513306	99757254	745	115080											
UBQLN2	29978	broad.mit.edu	37	chrX	56591074	56591074	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcaagacctggctcttagCaatctagaaagcatcccagg	8	11	3	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56591074	G	G	56591074	3	3	126	1	0	0	0	0	1	0	0	0	17023	709	25	4	770	4	UBQLN2	23	56591074	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1077768	56591074	98679486	746	115081											
FAM123B	139285	broad.mit.edu	37	chrX	63410828	63410828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgctggaaaagaggttcCcattgctggtgaactctacc	10	10	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63410828	A	A	63410828	3	1	126	1	0	0	0	0	1	0	0	0	5469	623	22	2	1072	2	FAM123B	23	63410828	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	6819754	63410828	91859732	747	115082											
MSN	4478	broad.mit.edu	37	chrX	64956849	64956849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaactctgagctggagaacCttctgcctgagctgtagact	10	11	2	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64956849	A	A	64956849	1	1	126	0	1	0	0	0	0	0	0	0	9979	696	24	2		2	MSN	23	64956849	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1546021	64956849	90313711	748	115083											
HEPH	9843	broad.mit.edu	37	chrX	65411935	65411935	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgggttaaaatcctattGgatagaatggggtcagccat	11	7	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65411935	C	C	65411935	1	2	126	0	1	0	0	0	0	0	0	0	7121	1363	47	4		4	HEPH	23	65411935	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	455086	65411935	89858625	749	115084											
OPHN1	4983	broad.mit.edu	37	chrX	67290385	67290385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatattgccgagagcatccaCcccaggaaggactttactgt	9	11	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67290385	A	A	67290385	1	1	126	0	1	0	0	0	0	0	0	0	10969	522	18	3		3	OPHN1	23	67290385	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1878450	67290385	87980175	750	115085											
TEX11	56159	broad.mit.edu	37	chrX	69902602	69902602	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgtcagtatggagtatcaGaacttttccaatattttccg	7	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69902602	T	T	69902602	3	4	126	1	0	0	0	0	1	0	0	0	15896	933	33	3	1767	3	TEX11	23	69902602	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2612217	69902602	85367958	751	115086											
SLC7A3	84889	broad.mit.edu	37	chrX	70149961	70149961	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccccctccaccaagcaaAggagctattgggaaatgagg	11	11	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70149961	G	G	70149961	1	3	126	0	1	0	0	0	0	0	0	0	14812	87	3	5		5	SLC7A3	23	70149961	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	247359	70149961	85120599	752	115087											
ZMYM3	9203	broad.mit.edu	37	chrX	70472410	70472410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccaccctctcccagccCtgattctccagataattagg	5	17	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70472410	A	A	70472410	1	1	126	0	1	0	0	0	0	0	0	0	17827	696	24	2		2	ZMYM3	23	70472410	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	322449	70472410	84798150	753	115088											
ACRC	93953	broad.mit.edu	37	chrX	70824043	70824043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgatgattcggaagctcccGacgacaagagtgatgattcg	13	8	0	5			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70824043	T	T	70824043	3	4	126	1	0	0	0	0	1	0	0	0	171	1058	37	3	942	3	ACRC	23	70824043	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	351633	70824043	84446517	754	115089											
FAM46D	169966	broad.mit.edu	37	chrX	79699123	79699123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctgaggcaaggtaccCtatttatgtaatacctgagc	10	9	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79699123	A	A	79699123	3	1	126	1	0	0	0	0	1	0	0	0	5619	681	24	2	1087	2	FAM46D	23	79699123	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	8875080	79699123	75571437	755	115090											
DACH2	117154	broad.mit.edu	37	chrX	85416112	85416112	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctactgtgttggggttgtaGccaattttcttaatgtaagt	11	5	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85416112	C	C	85416112	1	2	126	0	1	0	0	0	0	0	0	0	4254	986	34	4		4	DACH2	23	85416112	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	5716989	85416112	69854448	756	115091											
CPXCR1	53336	broad.mit.edu	37	chrX	88008572	88008572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacccaataaacagggagCcaggcacagcaacctcccag	8	16	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88008572	A	A	88008572	3	1	126	1	0	0	0	0	1	0	0	0	3868	739	26	3	159	3	CPXCR1	23	88008572	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	2592460	88008572	67261988	757	115092											
PABPC5	140886	broad.mit.edu	37	chrX	90690795	90690795	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctttcccgcggatgcagaGtgggccttgaacaccatgaa	12	12	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90690795	C	C	90690795	3	2	126	1	0	0	0	0	1	0	0	0	11461	1020	36	4	221	4	PABPC5	23	90690795	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	2682223	90690795	64579765	758	115093											
PCDH11X	27328	broad.mit.edu	37	chrX	91714745	91714745	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcccagctacggcgcccGgccggtcagcagcgcggcca	16	18	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91714745	A	A	91714745	1	1	126	0	1	0	0	0	0	0	0	0	11602	1131	39	4		4	PCDH11X	23	91714745	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1023950	91714745	63555815	759	115094											
XKRX	402415	broad.mit.edu	37	chrX	100178004	100178004	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacatagggctcctcctgctCctctttcttccacagtgtga	8	14	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100178004	A	A	100178004	4	1	126	1	0	0	0	0	0	1	0	0	17566	864	30	3	975	3	XKRX	23	100178004	Nonsense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	8463259	100178004	55092556	760	115095											
BTK	695	broad.mit.edu	37	chrX	100608115	100608115	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctatcagtctttggtggctGaatggccagctaaatgggca	13	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100608115	A	A	100608115	1	1	126	0	1	0	0	0	0	0	0	0	1567	1305	45	4		4	BTK	23	100608115	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	430111	100608115	54662445	761	115096											
NXF3	56000	broad.mit.edu	37	chrX	102332779	102332779	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctgatttcttcgatacctCtactgtgcctccctcctagc	5	16	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102332779	A	A	102332779	1	1	126	0	1	0	0	0	0	0	0	0	10880	928	32	3		3	NXF3	23	102332779	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	1724664	102332779	52937781	762	115097											
COL4A6	1288	broad.mit.edu	37	chrX	107464300	107464300	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcacgccattgtactccagCctgggcaacagggcgagact	11	13	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107464300	G	G	107464300	1	3	126	0	1	0	0	0	0	0	0	0	3727	754	26	4		4	COL4A6	23	107464300	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	5131521	107464300	47806260	763	115098											
IRS4	8471	broad.mit.edu	37	chrX	107977841	107977841	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccacctgagccatggccAtctccaggtccctggccacc	8	20	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107977841	T	T	107977841	3	4	126	1	0	0	0	0	1	0	0	0	7912	214	8	5	2043	5	IRS4	23	107977841	Missense_Mutation	SNP	A	TCGA-44-6774-01A-21D-1855-08	513541	107977841	47292719	764	115099											
GUCY2F	2986	broad.mit.edu	37	chrX	108708604	108708604	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcagtcattttcagatcatGagcacattccaagagatgca	7	9	4	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108708604	C	C	108708604	3	2	126	1	0	0	0	0	1	0	0	0	6963	1290	45	4	2595	4	GUCY2F	23	108708604	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	730763	108708604	46561956	765	115100											
TRPC5	7224	broad.mit.edu	37	chrX	111195529	111195529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcatagtcccccttctcCacagcattgaggaaggcctt	10	13	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111195529	A	A	111195529	2	1	126	1	0	0	0	0	0	0	0	1	16707	581	21	2		2	TRPC5	23	111195529	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	2486925	111195529	44075031	766	115101											
IL13RA2	3598	broad.mit.edu	37	chrX	114250134	114250134	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctttttatatcctaattagAactattgagatatgggaatt	7	4	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114250134	T	T	114250134	1	4	126	0	1	0	0	0	0	0	0	0	7700	261	9	5		5	IL13RA2	23	114250134	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	3054605	114250134	41020426	767	115102											
LONRF3	79836	broad.mit.edu	37	chrX	118108865	118108865	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggcccccacccaaaggTggctgcagagggccccgcac	13	17	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118108865	C	C	118108865	3	2	126	1	0	0	0	0	1	0	0	0	8983	1696	59	5	124	5	LONRF3	23	118108865	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	3858731	118108865	37161695	768	115103											
LONRF3	79836	broad.mit.edu	37	chrX	118148118	118148118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgtcaaaagtgactctGggaatgatggagagggtaca	15	5	2	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118148118	T	T	118148118	1	4	126	0	1	0	0	0	0	0	0	0	8983	1363	47	2		2	LONRF3	23	118148118	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	39253	118148118	37122442	769	115104											
KIAA1210	57481	broad.mit.edu	37	chrX	118220782	118220782	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaaaaagcttttcaacatCatcctgattggataggtttg	7	8	2	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118220782	T	T	118220782	3	4	126	1	0	0	0	0	1	0	0	0	8284	826	29	4	734	4	KIAA1210	23	118220782	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	72664	118220782	37049778	770	115105											
CXorf56	63932	broad.mit.edu	37	chrX	118675326	118675326	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcttgctcatgcctttgcGctccagctgtttttcaatca	6	14	4	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118675326	C	C	118675326	3	2	126	1	0	0	0	0	1	0	0	0	4145	1087	38	4	105	4	CXorf56	23	118675326	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	454544	118675326	36595234	771	115106											
ZBTB33	10009	broad.mit.edu	37	chrX	119387450	119387450	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtacctacttccatcagctCttctctgttgctgggcaagt	8	12	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119387450	A	A	119387450	2	1	126	1	0	0	0	0	0	0	0	1	17662	900	32	3		3	ZBTB33	23	119387450	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	712124	119387450	35883110	772	115107											
ODZ1	10178	broad.mit.edu	37	chrX	123839006	123839006	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgaggaagaggcctgggaGggggcgagtacacggtattg	19	6	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123839006	A	A	123839006	3	1	126	1	0	0	0	0	1	0	0	0	10929	1000	35	4	7438	4	ODZ1	23	123839006	Missense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	4451556	123839006	31431554	773	115108											
ODZ1	10178	broad.mit.edu	37	chrX	124028304	124028304	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgcttaaaaaaaacccAgctttattgcaatataattc	6	7	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124028304	T	T	124028304	1	4	126	0	1	0	0	0	0	0	0	0	10929	203	7	5		5	ODZ1	23	124028304	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	189298	124028304	31242256	774	115109											
SMARCA1	6594	broad.mit.edu	37	chrX	128657272	128657272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacggcccgggctgctcgtCctctatgaccacgatagtgg	14	13	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128657272	A	A	128657272	3	1	126	1	0	0	0	0	1	0	0	0	14882	855	30	3	3184	3	SMARCA1	23	128657272	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	4628968	128657272	26613288	775	115110											
XPNPEP2	7512	broad.mit.edu	37	chrX	128894695	128894695	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgagaaaatccagcctagaGagagaaagtgacttgcccaa	10	8	0	4			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128894695	T	T	128894695	1	4	126	0	1	0	0	0	0	0	0	0	17570	957	33	3		3	XPNPEP2	23	128894695	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	237423	128894695	26375865	776	115111											
AIFM1	9131	broad.mit.edu	37	chrX	129271088	129271088	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatggtccagttgctgaggTattcggggaggatctttccc	13	10	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129271088	A	A	129271088	3	1	126	1	0	0	0	0	1	0	0	0	426	1638	57	5	829	5	AIFM1	23	129271088	Missense_Mutation	SNP	T	TCGA-44-6774-01A-21D-1855-08	376393	129271088	25999472	777	115112											
FRMD7	90167	broad.mit.edu	37	chrX	131212510	131212510	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacttgtcctttcctctgctCtaattggggaccatctgggc	10	12	3	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131212510	A	A	131212510	3	1	126	1	0	0	0	0	1	0	0	0	6115	913	32	3	613	3	FRMD7	23	131212510	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	1941422	131212510	24058050	778	115113											
HS6ST2	90161	broad.mit.edu	37	chrX	131803196	131803196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacggagagttggcgcctgCgttagtgtttggagaacccc	15	9	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131803196	A	A	131803196	1	1	126	0	1	0	0	0	0	0	0	0	7438	768	27	3		3	HS6ST2	23	131803196	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	590686	131803196	23467364	779	115114											
USP26	83844	broad.mit.edu	37	chrX	132160953	132160953	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaattagtaatgacaggGcaagaaaacccactggtgtc	9	8	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132160953	T	T	132160953	4	4	126	1	0	0	0	0	0	1	0	0	17183	1195	42	3	1448	3	USP26	23	132160953	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	357757	132160953	23109607	780	115115											
FAM127C	441518	broad.mit.edu	37	chrX	134156562	134156562	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctgcaccgaggcgtagcGggaagtgcatgtcgcgggag	20	9	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134156562	A	A	134156562	1	1	126	0	1	0	0	0	0	0	0	0	5479	1131	39	4		4	FAM127C	23	134156562	5'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	1995609	134156562	21113998	781	115116											
SAGE1	55511	broad.mit.edu	37	chrX	134983834	134983834	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagagtatgtcctcgtgGttagacaaacaggaaggtga	14	5	0	3			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134983834	A	A	134983834	4	1	126	1	0	0	0	0	0	1	0	0	13920	1270	44	4	210	4	SAGE1	23	134983834	Nonsense_Mutation	SNP	G	TCGA-44-6774-01A-21D-1855-08	827272	134983834	20286726	782	115117											
ATP11C	286410	broad.mit.edu	37	chrX	138820033	138820033	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcatggcagatattgaggCcccttccaaaaatcaggttg	10	10	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138820033	T	T	138820033	1	4	126	0	1	0	0	0	0	0	0	0	1125	754	26	4		4	ATP11C	23	138820033	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	3836199	138820033	16450527	783	115118											
ATP11C	286410	broad.mit.edu	37	chrX	138865476	138865476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattttaaggctggtattGtggttttagtaagagtaact	11	2	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138865476	T	T	138865476	1	4	126	0	1	0	0	0	0	0	0	0	1125	1392	48	3		3	ATP11C	23	138865476	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	45443	138865476	16405084	784	115119											
MAGEA8	4107	broad.mit.edu	37	chrX	149013289	149013289	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgacagcactctgtggagCcaatccgatgagggttccag	12	12	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149013289	G	G	149013289	3	3	126	1	0	0	0	0	1	0	0	0	9261	738	26	4	245	4	MAGEA8	23	149013289	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	10147813	149013289	6257271	785	115120											
GPR50	9248	broad.mit.edu	37	chrX	150349618	150349618	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccactgctgactatccCaagcctgccactaccagcca	5	20	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150349618	A	A	150349618	2	1	126	1	0	0	0	0	0	0	0	1	6762	581	21	2		2	GPR50	23	150349618	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	1336329	150349618	4920942	786	115121											
MAGEA4	4103	broad.mit.edu	37	chrX	151092221	151092221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggcctggtgggtgcaCaggctcctactactgaggag	15	12	0	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151092221	A	A	151092221	3	1	126	1	0	0	0	0	1	0	0	0	9258	479	17	3	87	3	MAGEA4	23	151092221	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	742603	151092221	4178339	787	115122											
GABRE	2564	broad.mit.edu	37	chrX	151138890	151138890	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaccctagaacattcaaacGaaaaatgaagctctgccctg	7	12	2	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151138890	T	T	151138890	1	4	126	0	1	0	0	0	0	0	0	0	6230	1073	37	3		3	GABRE	23	151138890	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	46669	151138890	4131670	788	115123											
HAUS7	55559	broad.mit.edu	37	chrX	152720441	152720441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggaatccttgagccaagGgcagagttgcgcacgtggga	15	10	0	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152720441	T	T	152720441	1	4	126	0	1	0	0	0	0	0	0	0	7037	1247	43	2		2	HAUS7	23	152720441	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	1581551	152720441	2550119	789	115124											
FAM58A	92002	broad.mit.edu	37	chrX	152864383	152864383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctccgcgaagcgggccgcGgcgccgcctgtcctggcctc	15	19	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152864383	T	T	152864383	1	4	126	0	1	0	0	0	0	0	0	0	5641	1131	39	1		1	FAM58A	23	152864383	Intron	SNP	G	TCGA-44-6774-01A-21D-1855-08	143942	152864383	2406177	790	115125											
DUSP9	1852	broad.mit.edu	37	chrX	152915427	152915427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccgggccctttcctgccCcatctagatgaggccttgtc	9	17	1	2			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152915427	A	A	152915427	1	1	126	0	1	0	0	0	0	0	0	0	4872	638	22	2		2	DUSP9	23	152915427	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	51044	152915427	2355133	791	115126											
SLC6A8	6535	broad.mit.edu	37	chrX	152957588	152957588	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actagaggcatgcagcggggAgggtggctcagccctgggag	19	9	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152957588	T	T	152957588	1	4	126	0	1	0	0	0	0	0	0	0	14804	319	11	5		5	SLC6A8	23	152957588	Intron	SNP	A	TCGA-44-6774-01A-21D-1855-08	42161	152957588	2312972	792	115127											
NAA10	8260	broad.mit.edu	37	chrX	153197425	153197425	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttccccacagccggccCacccccgacctggaaggcaa	8	21	1	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153197425	A	A	153197425	1	1	126	0	1	0	0	0	0	0	0	0	10210	609	21	2		2	NAA10	23	153197425	Intron	SNP	C	TCGA-44-6774-01A-21D-1855-08	239837	153197425	2073135	793	115128											
HCFC1	3054	broad.mit.edu	37	chrX	153219071	153219071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttaccggcacagaggggCccgggaccggtgtggactgc	16	13	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153219071	A	A	153219071	3	1	126	1	0	0	0	0	1	0	0	0	7057	739	26	3	1659	3	HCFC1	23	153219071	Missense_Mutation	SNP	C	TCGA-44-6774-01A-21D-1855-08	21646	153219071	2051489	794	115129											
PLXNA3	55558	broad.mit.edu	37	chrX	153694526	153694526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaggagtcgctggtgccCagcccgccgccggggcccgt	17	15	0	0			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153694526	A	A	153694526	2	1	126	1	0	0	0	0	0	0	0	1	12216	581	21	2		2	PLXNA3	23	153694526	Silent	SNP	C	TCGA-44-6774-01A-21D-1855-08	475455	153694526	1576034	795	115130											
CTAG2	30848	broad.mit.edu	37	chrX	153880408	153880408	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgccaggctgggcttagcGcctctgccctgagggagcct	16	14	1	1			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153880408	A	A	153880408	1	1	126	0	1	0	0	0	0	0	0	0	4025	1087	38	4		4	CTAG2	23	153880408	3'UTR	SNP	G	TCGA-44-6774-01A-21D-1855-08	185882	153880408	1390152	796	115131											
MIB2	142678	broad.mit.edu	37	chr1	1559174	1559174	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtccggcaccccaacatcAtctgtgactgctgcaagaag	10	14	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1559174	T	T	1559174	3	4	127	1	0	0	0	0	1	0	0	0	9660	217	8	5	627	5	MIB2	1	1559174	Missense_Mutation	SNP	A	TCGA-44-6775-01A-11D-1855-08		1559174	247691447	1	115132											
TP73	7161	broad.mit.edu	37	chr1	3624272	3624272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgccggcgcctgtcatcCcctccaacaccgactacccc	7	21	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3624272	A	A	3624272	3	1	127	1	0	0	0	0	1	0	0	0	16517	623	22	2	399	2	TP73	1	3624272	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	2065098	3624272	245626349	2	115133											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17966799	17966799	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggccaaaatcggactccgTgagtatagccccagggagag	13	10	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17966799	G	G	17966799	5	3	127	1	0	0	0	0	0	0	1	0	897	1710	59	5	2352	5	ARHGEF10L	1	17966799	Splice_Site	SNP	T	TCGA-44-6775-01A-11D-1855-08	14342527	17966799	231283822	3	115134											
UBR4	23352	broad.mit.edu	37	chr1	19486803	19486803	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatagaaaaaatacaccagTgaaaaaaaaaaaaaagaaaa	4	3	0	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19486803	G	G	19486803	1	3	127	0	1	0	0	0	0	0	0	0	17030	1711	59	5		5	UBR4	1	19486803	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	1520004	19486803	229763818	4	115135											
NBPF3	84224	broad.mit.edu	37	chr1	21797239	21797239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctcaggtgagtgggccCcctggggtcaggcaggtggg	21	9	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21797239	A	A	21797239	1	1	127	0	1	0	0	0	0	0	0	0	10292	638	22	2		2	NBPF3	1	21797239	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	2310436	21797239	227453382	5	115136											
ZNF593	51042	broad.mit.edu	37	chr1	26497026	26497026	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctcagcagatagggctctCacctggtcagctcccaactc	9	15	3	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26497026	A	A	26497026	1	1	127	0	1	0	0	0	0	0	0	0	18150	841	29	3		3	ZNF593	1	26497026	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	4699787	26497026	222753595	6	115137											
CSMD2	114784	broad.mit.edu	37	chr1	34209262	34209262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaacattctgcctgcacCactgagggctggcaggggga	13	14	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34209262	A	A	34209262	1	1	127	0	1	0	0	0	0	0	0	0	3979	609	21	2		2	CSMD2	1	34209262	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	7712236	34209262	215041359	7	115138											
MPL	4352	broad.mit.edu	37	chr1	43806055	43806055	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacttacttctttgacttTagtggcacttggactgcaat	10	8	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43806055	C	C	43806055	1	2	127	0	1	0	0	0	0	0	0	0	9824	1769	61	5		5	MPL	1	43806055	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	9596793	43806055	205444566	8	115139											
KLF17	128209	broad.mit.edu	37	chr1	44595592	44595592	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgttgcccccgcaagatGcccatgaccttgggatgccc	11	14	0	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44595592	A	A	44595592	3	1	127	1	0	0	0	0	1	0	0	0	8416	1319	46	4	655	4	KLF17	1	44595592	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	789537	44595592	204655029	9	115140											
LPHN2	23266	broad.mit.edu	37	chr1	82450336	82450336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccaactgagagtcccCacagttcagtgaaggcatca	9	14	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82450336	A	A	82450336	3	1	127	1	0	0	0	0	1	0	0	0	9003	594	21	2	3367	2	LPHN2	1	82450336	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	37854744	82450336	166800285	10	115141											
EPHX4	253152	broad.mit.edu	37	chr1	92511225	92511225	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtatttacaggtgagttCaagtttttatcaaaacagtt	7	4	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92511225	A	A	92511225	1	1	127	0	1	0	0	0	0	0	0	0	5224	841	29	3		3	EPHX4	1	92511225	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	10060889	92511225	156739396	11	115142											
ABCA4	24	broad.mit.edu	37	chr1	94543389	94543389	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcttcagcagtaataccttCttcaccaagctgcctattca	6	13	4	0	rs1800548	byFrequency	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94543389	T	T	94543389	3	4	127	1	0	0	0	0	1	0	0	0	34	922	32	4	5570	4	ABCA4	1	94543389	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	2032164	94543389	154707232	12	115143											
RBM15	64783	broad.mit.edu	37	chr1	110882747	110882747	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccagaggccgcctggtgctCtatgaccggcctctgaagat	13	13	2	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110882747	T	T	110882747	2	4	127	1	0	0	0	0	0	0	0	1	13224	900	32	4		4	RBM15	1	110882747	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	16339358	110882747	138367874	13	115144											
LRIG2	9860	broad.mit.edu	37	chr1	113638687	113638687	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagttaagactagagcagAttggaataaatcattcccat	9	7	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113638687	G	G	113638687	1	3	127	0	1	0	0	0	0	0	0	0	9032	348	12	5		5	LRIG2	1	113638687	Intron	SNP	A	TCGA-44-6775-01A-11D-1855-08	2755940	113638687	135611934	14	115145											
WDR3	10885	broad.mit.edu	37	chr1	118491197	118491197	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgatttctctcagggtttCtttaaagaaagcctgaggtt	9	8	3	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118491197	T	T	118491197	1	4	127	0	1	0	0	0	0	0	0	0	17412	928	32	4		4	WDR3	1	118491197	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	4852510	118491197	130759424	15	115146											
NBPF10	100132406	broad.mit.edu	37	chr1	145368660	145368660	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtctccacctggtgttccaGatgggagtcatattcccaca	9	12	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145368660	T	T	145368660	3	4	127	1	0	0	0	0	1	0	0	0	10287	933	33	3	10972	3	NBPF10	1	145368660	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	26877463	145368660	103881961	16	115147											
LOC200030	200030	broad.mit.edu	37	chr1	148252280	148252280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctatatgttgggatagaaCagggccaggtagaaaacaat	12	6	0	2	rs143057139	by1000genomes	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148252280	A	A	148252280	1	1	127	0	1	0	0	0	0	0	0	0	8950	493	17	3		3	LOC200030	1	148252280	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	2883620	148252280	100998341	17	115148											
ANP32E	81611	broad.mit.edu	37	chr1	150201624	150201624	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaaataccatgttatttCttttttcttttttttttttt	1	4	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150201624	T	T	150201624	1	4	127	0	1	0	0	0	0	0	0	0	709	928	32	4		4	ANP32E	1	150201624	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	1949344	150201624	99048997	18	115149											
HRNR	388697	broad.mit.edu	37	chr1	152193005	152193005	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctagaggagtgacctgagCcagaaccatgcttactatag	12	9	0	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152193005	T	T	152193005	3	4	127	1	0	0	0	0	1	0	0	0	7426	739	26	4	7456	4	HRNR	1	152193005	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	1991381	152193005	97057616	19	115150											
ZBTB7B	51043	broad.mit.edu	37	chr1	154987882	154987882	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagcagtgggggcagtgGgccgggggacagctacagcc	21	10	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154987882	A	A	154987882	3	1	127	1	0	0	0	0	1	0	0	0	17680	1232	43	4	748	4	ZBTB7B	1	154987882	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	2794877	154987882	94262739	20	115151											
THBS3	7059	broad.mit.edu	37	chr1	155172166	155172166	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgatgcagctggagccCgggaaacaggggtcagcgtg	18	8	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155172166	A	A	155172166	2	1	127	1	0	0	0	0	0	0	0	1	15978	639	23	1		1	THBS3	1	155172166	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	184284	155172166	94078455	21	115152											
FDPS	2224	broad.mit.edu	37	chr1	155290372	155290372	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgtctttctggggcttgCgcgcaaaatctacaagcgga	12	11	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155290372	T	T	155290372	3	4	127	1	0	0	0	0	1	0	0	0	5860	768	27	4	1270	4	FDPS	1	155290372	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	118206	155290372	93960249	22	115153											
ROBLD3	28956	broad.mit.edu	37	chr1	156024937	156024937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcttagggcatgttccGggacacgctcaggccagagc	16	11	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156024937	T	T	156024937	1	4	127	0	1	0	0	0	0	0	0	0	13623	1131	39	1		1	ROBLD3	1	156024937	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	734565	156024937	93225684	23	115154											
SMG5	23381	broad.mit.edu	37	chr1	156247843	156247843	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcagagctcacgcagcctgGagggtgtagaggagcatgag	17	9	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156247843	A	A	156247843	1	1	127	0	1	0	0	0	0	0	0	0	14910	1189	41	4		4	SMG5	1	156247843	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	222906	156247843	93002778	24	115155											
SPTA1	6708	broad.mit.edu	37	chr1	158631227	158631227	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaaaggaatttcaaagtttCggattatcctggtgtatgga	12	4	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158631227	T	T	158631227	1	4	127	0	1	0	0	0	0	0	0	0	15234	899	31	4		4	SPTA1	1	158631227	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	2383384	158631227	90619394	25	115156											
IGSF9	57549	broad.mit.edu	37	chr1	159900488	159900488	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagaagcttctcaccttccgGagcagacaagacgatttcgc	10	12	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159900488	A	A	159900488	3	1	127	1	0	0	0	0	1	0	0	0	7675	1174	41	4	1764	4	IGSF9	1	159900488	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	1269261	159900488	89350133	26	115157											
ATP1A4	480	broad.mit.edu	37	chr1	160136904	160136904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagggtacctcagtgtcCagggtgtaacctgacctctc	12	11	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160136904	A	A	160136904	1	1	127	0	1	0	0	0	0	0	0	0	1135	609	21	2		2	ATP1A4	1	160136904	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	236416	160136904	89113717	27	115158											
FMO1	2326	broad.mit.edu	37	chr1	171240425	171240425	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagcagaacaggaaaaAggctgaaggaggcctcttgg	14	8	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171240425	G	G	171240425	1	3	127	0	1	0	0	0	0	0	0	0	6012	87	3	5		5	FMO1	1	171240425	Intron	SNP	A	TCGA-44-6775-01A-11D-1855-08	11103521	171240425	78010196	28	115159											
NCF2	4688	broad.mit.edu	37	chr1	183525357	183525357	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcactccccttccagccattCttcattcactgataaaagga	5	14	3	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183525357	T	T	183525357	3	4	127	1	0	0	0	0	1	0	0	0	10312	922	32	4	107	4	NCF2	1	183525357	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	12284932	183525357	65725264	29	115160											
TIMM17A	10440	broad.mit.edu	37	chr1	201926395	201926395	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaaatatggtcttttttttCcccctgttcttagcccatgg	7	10	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201926395	T	T	201926395	1	4	127	0	1	0	0	0	0	0	0	0	16031	870	30	4		4	TIMM17A	1	201926395	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	18401038	201926395	47324226	30	115161											
ADIPOR1	51094	broad.mit.edu	37	chr1	202911154	202911154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagattcatttcttaccCatatgtcaaattttccagga	6	8	3	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202911154	A	A	202911154	3	1	127	1	0	0	0	0	1	0	0	0	318	608	21	2	137	2	ADIPOR1	1	202911154	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	984759	202911154	46339467	31	115162											
USH2A	7399	broad.mit.edu	37	chr1	216496918	216496918	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatgaaaccttatttgcGtggcttttacgaactcttga	8	7	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216496918	A	A	216496918	3	1	127	1	0	0	0	0	1	0	0	0	17162	1145	40	4	14434	4	USH2A	1	216496918	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	13585764	216496918	32753703	32	115163											
SUSD4	55061	broad.mit.edu	37	chr1	223465898	223465898	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtcttggcagtgaaatcGggctacagagccttcaaaga	11	10	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223465898	T	T	223465898	2	4	127	1	0	0	0	0	0	0	0	1	15528	1124	39	1		1	SUSD4	1	223465898	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	6968980	223465898	25784723	33	115164											
DEGS1	8560	broad.mit.edu	37	chr1	224363386	224363386	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattattctgctgagactgaAttttctgctgtccacgagcc	8	11	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224363386	T	T	224363386	1	4	127	0	1	0	0	0	0	0	0	0	4462	116	4	5		5	DEGS1	1	224363386	5'Flank	SNP	A	TCGA-44-6775-01A-11D-1855-08	897488	224363386	24887235	34	115165											
EXOC8	149371	broad.mit.edu	37	chr1	231472493	231472493	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactcctggatccattccatGgagaggtccaccttctcttc	7	14	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231472493	T	T	231472493	2	4	127	1	0	0	0	0	0	0	0	1	5353	1335	47	2		2	EXOC8	1	231472493	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	7109107	231472493	17778128	35	115166											
KIF26B	55083	broad.mit.edu	37	chr1	245849588	245849588	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggggtcctgccgtctccCgccccactgcctccctcgag	11	19	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245849588	A	A	245849588	2	1	127	1	0	0	0	0	0	0	0	1	8365	639	23	1		1	KIF26B	1	245849588	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	14377095	245849588	3401033	36	115167											
OR2L13	284521	broad.mit.edu	37	chr1	248166534	248166534	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcctcattgttttcattttCctaatggctctaattggaaa	5	8	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248166534	T	T	248166534	1	4	127	0	1	0	0	0	0	0	0	0	11100	870	30	4		4	OR2L13	1	248166534	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	2316946	248166534	1084087	37	115168											
PPM1G	5496	broad.mit.edu	37	chr2	27609006	27609006	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggaaaagcccaagggctaGagaacaagggaaaagcctac	12	8	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27609006	C	C	27609006	1	2	127	0	1	0	0	0	0	0	0	0	12441	957	33	4		4	PPM1G	2	27609006	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08		27609006	215590367	38	115169											
DHX57	90957	broad.mit.edu	37	chr2	39070329	39070329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcatggaccgcatatatGggctcccatcctgtaataca	8	11	1	0	rs145470008		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39070329	T	T	39070329	3	4	127	1	0	0	0	0	1	0	0	0	4553	1348	47	2	1969	2	DHX57	2	39070329	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	11461323	39070329	204129044	39	115170											
AUP1	550	broad.mit.edu	37	chr2	74755112	74755112	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattcgcttcccctagttgGcgatgaacaggacgaagcca	10	12	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74755112	A	A	74755112	2	1	127	1	0	0	0	0	0	0	0	1	1225	1190	42	4		4	AUP1	2	74755112	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	35684783	74755112	168444261	40	115171											
REG3A	5068	broad.mit.edu	37	chr2	79384709	79384709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtttcttacctgtgcttctcGacaggctcgcacagtggccg	11	13	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384709	A	A	79384709	3	1	127	1	0	0	0	0	1	0	0	0	13320	1059	37	4	86	4	REG3A	2	79384709	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	4629597	79384709	163814664	41	115172											
MRPS5	64969	broad.mit.edu	37	chr2	95774073	95774073	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccttctcctgctcttcctTgcttctttgggcaatggtct	7	14	4	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95774073	G	G	95774073	3	3	127	1	0	0	0	0	1	0	0	0	9940	1821	63	5	840	5	MRPS5	2	95774073	Missense_Mutation	SNP	T	TCGA-44-6775-01A-11D-1855-08	16389364	95774073	147425300	42	115173											
VWA3B	200403	broad.mit.edu	37	chr2	98916570	98916570	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtgtttgccaaaattgTgatacccaaaggatttgact	8	6	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98916570	C	C	98916570	3	2	127	1	0	0	0	0	1	0	0	0	17368	1696	59	5	3405	5	VWA3B	2	98916570	Missense_Mutation	SNP	T	TCGA-44-6775-01A-11D-1855-08	3142497	98916570	144282803	43	115174											
IL1R1	3554	broad.mit.edu	37	chr2	102785263	102785263	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagggaaagtgagacaaaTtatatcttaattttttgtat	9	2	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102785263	G	G	102785263	1	3	127	0	1	0	0	0	0	0	0	0	7728	1508	52	5		5	IL1R1	2	102785263	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	3868693	102785263	140414110	44	115175											
SLC5A7	60482	broad.mit.edu	37	chr2	108604682	108604682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttgctggttggaatatGggctgcctggagaaccaaaa	12	6	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108604682	T	T	108604682	3	4	127	1	0	0	0	0	1	0	0	0	14784	1357	47	2	73	2	SLC5A7	2	108604682	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	5819419	108604682	134594691	45	115176											
IL1A	3552	broad.mit.edu	37	chr2	113540175	113540175	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taatgaaagacaggtctctgGacctctagtgagggtaaaac	11	7	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113540175	T	T	113540175	1	4	127	0	1	0	0	0	0	0	0	0	7720	1189	41	3		3	IL1A	2	113540175	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	4935493	113540175	129659198	46	115177											
DPP10	57628	broad.mit.edu	37	chr2	116534783	116534783	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atattttctatttctttgcaGagtaaaagtgagcaaattac	6	5	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116534783	A	A	116534783	5	1	127	1	0	0	0	0	0	0	1	0	4767	956	33	4	1446	4	DPP10	2	116534783	Splice_Site	SNP	G	TCGA-44-6775-01A-11D-1855-08	2994608	116534783	126664590	47	115178											
UGGT1	56886	broad.mit.edu	37	chr2	128867293	128867293	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgaatctgatacccttgAggctcttctactgacagcct	8	11	3	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128867293	G	G	128867293	3	3	127	1	0	0	0	0	1	0	0	0	17067	304	11	5	512	5	UGGT1	2	128867293	Missense_Mutation	SNP	A	TCGA-44-6775-01A-11D-1855-08	12332510	128867293	114332080	48	115179											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135810138	135810138	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccccagacacaccacaAgtgacgccacttgtgcggga	10	15	0	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135810138	G	G	135810138	1	3	127	0	1	0	0	0	0	0	0	0	13043	87	3	5		5	RAB3GAP1	2	135810138	Intron	SNP	A	TCGA-44-6775-01A-11D-1855-08	6942845	135810138	107389235	49	115180											
LY75	4065	broad.mit.edu	37	chr2	160734964	160734964	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtattttcttagagatttatCatactttttcatcaaatcat	3	6	5	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160734964	T	T	160734964	3	4	127	1	0	0	0	0	1	0	0	0	9187	826	29	4	3623	4	LY75	2	160734964	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	24924826	160734964	82464409	50	115181											
TTN	7273	broad.mit.edu	37	chr2	179596231	179596231	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgtaattggcaaggagccCttcagagtggcctggaaggc	14	10	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179596231	G	G	179596231	3	3	127	1	0	0	0	0	1	0	0	0	16861	680	24	4	87483	4	TTN	2	179596231	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	18861267	179596231	63603142	51	115182											
ITGAV	3685	broad.mit.edu	37	chr2	187529903	187529903	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaaaccaaactcgccaGgtggtatgtgaccttggaaa	10	9	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187529903	T	T	187529903	3	4	127	1	0	0	0	0	1	0	0	0	7958	991	35	2	2257	2	ITGAV	2	187529903	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	7933672	187529903	55669470	52	115183											
ITGAV	3685	broad.mit.edu	37	chr2	187531391	187531391	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttgaaattttgctaattaGacattgactagcattactat	5	5	0	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187531391	T	T	187531391	1	4	127	0	1	0	0	0	0	0	0	0	7958	957	33	3		3	ITGAV	2	187531391	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	1488	187531391	55667982	53	115184											
GLS	2744	broad.mit.edu	37	chr2	191818172	191818172	+	Intron	DEL	T	-	-													ggaagtgtccttgagatcacTttttgcacgtgactcagctg							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	191818172	-	-	191818172	6	5	127	0	1	1	0	1	0	0	0	0	6527	1624	56	0		0	GLS	2	191818172	Intron	DEL	T	TCGA-44-6775-01A-11D-1855-08	4286781	191818172	51381201	54	115185											
GLS	2744	broad.mit.edu	37	chr2	191818365	191818366	+	Intron	INS	-	A	A													ttcgaaggtatgtttacaggINSatggattagcatgcacttta							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191818366	A	A	191818365	6	5	127	0	1	1	1	0	0	0	0	0	6527	1189	41	0		0	GLS	2	191818365	Intron	INS	-	TCGA-44-6775-01A-11D-1855-08	193	191818365	51381008	55	115186											
LANCL1	10314	broad.mit.edu	37	chr2	211336644	211336644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatgctctggctcttaaGcacaatgcttatgccagctc	7	11	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211336644	T	T	211336644	1	4	127	0	1	0	0	0	0	0	0	0	8692	986	34	3		3	LANCL1	2	211336644	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	19518279	211336644	31862729	56	115187											
CXCR2	3579	broad.mit.edu	37	chr2	218999975	218999975	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttacctggccattgtccatGccacacgcacactgacccag	8	16	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218999975	A	A	218999975	3	1	127	1	0	0	0	0	1	0	0	0	4124	1319	46	4	453	4	CXCR2	2	218999975	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	7663331	218999975	24199398	57	115188											
PTPRN	5798	broad.mit.edu	37	chr2	220167372	220167372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggctgtgggggcagcaGcaggtgctccaagagaggcg	21	8	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220167372	T	T	220167372	3	4	127	1	0	0	0	0	1	0	0	0	12915	962	34	3	2450	3	PTPRN	2	220167372	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	1167397	220167372	23032001	58	115189											
SPEG	10290	broad.mit.edu	37	chr2	220355212	220355212	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatcgtgccctatgctgcCgagggcaagcggcgggtcct	15	12	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220355212	A	A	220355212	2	1	127	1	0	0	0	0	0	0	0	1	15154	639	23	1		1	SPEG	2	220355212	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	187840	220355212	22844161	59	115190											
DNER	92737	broad.mit.edu	37	chr2	230377688	230377688	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacagtgtctattacctgGcacctctcaacagtgtgctt	8	12	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230377688	A	A	230377688	1	1	127	0	1	0	0	0	0	0	0	0	4707	1218	42	4		4	DNER	2	230377688	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	10022476	230377688	12821685	60	115191											
NGEF	25791	broad.mit.edu	37	chr2	233791670	233791670	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcgtatgaaacacaacgGcatcccatgagcaggaggac	10	12	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233791670	A	A	233791670	1	1	127	0	1	0	0	0	0	0	0	0	10489	1218	42	4		4	NGEF	2	233791670	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	3413982	233791670	9407703	61	115192											
TTLL3	26140	broad.mit.edu	37	chr3	9867508	9867508	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggcagaactcaggcacctCgacactcaggtccagcgctg	13	14	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9867508	A	A	9867508	2	1	127	1	0	0	0	0	0	0	0	1	16854	871	31	3		3	TTLL3	3	9867508	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08		9867508	188154922	62	115193											
KAT2B	8850	broad.mit.edu	37	chr3	20082268	20082268	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcggagtgtactccgcctGcaaggtacgcgctcgccgct	12	15	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20082268	A	A	20082268	3	1	127	1	0	0	0	0	1	0	0	0	8052	1319	46	4	301	4	KAT2B	3	20082268	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	10214760	20082268	177940162	63	115194											
OSBPL10	114884	broad.mit.edu	37	chr3	31725315	31725315	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcatcggccattgggtgttCgtgacagctggcaggagagc	16	9	1	2	rs140782910		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31725315	A	A	31725315	4	1	127	1	0	0	0	0	0	1	0	0	11369	893	31	3	777	3	OSBPL10	3	31725315	Nonsense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	11643047	31725315	166297115	64	115195											
C3orf23	285343	broad.mit.edu	37	chr3	44396194	44396194	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgttttacatttaaaattCtacttgttcatttgtgatat	5	4	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44396194	T	T	44396194	1	4	127	0	1	0	0	0	0	0	0	0	2238	928	32	4		4	C3orf23	3	44396194	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	12670879	44396194	153626236	65	115196											
CELSR3	1951	broad.mit.edu	37	chr3	48691253	48691253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaacagggttacagccCctgccccaggaacagatctg	11	12	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48691253	A	A	48691253	1	1	127	0	1	0	0	0	0	0	0	0	3253	638	22	2		2	CELSR3	3	48691253	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	4295059	48691253	149331177	66	115197											
ERC2	26059	broad.mit.edu	37	chr3	56330169	56330169	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctccaggcttttggatgGcaagcctttactttgcaaca	8	11	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56330169	A	A	56330169	3	1	127	1	0	0	0	0	1	0	0	0	5253	1203	42	4	1971	4	ERC2	3	56330169	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	7638916	56330169	141692261	67	115198											
MAGI1	9223	broad.mit.edu	37	chr3	65342745	65342745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgccggcggtcgggccCggccctcacttccggaacac	13	17	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65342745	A	A	65342745	3	1	127	1	0	0	0	0	1	0	0	0	9282	652	23	1	695	1	MAGI1	3	65342745	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	9012576	65342745	132679685	68	115199											
ROBO1	6091	broad.mit.edu	37	chr3	78766486	78766486	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggtacagggtcacctcGggcctcacatttaaattctg	10	10	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78766486	T	T	78766486	2	4	127	1	0	0	0	0	0	0	0	1	13624	1124	39	1		1	ROBO1	3	78766486	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	13423741	78766486	119255944	69	115200											
SEC61A1	29927	broad.mit.edu	37	chr3	127783795	127783795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaaggtccgagcccttcGggaggcgttctaccgccaga	13	13	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127783795	T	T	127783795	3	4	127	1	0	0	0	0	1	0	0	0	14113	1116	39	1	722	1	SEC61A1	3	127783795	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	49017309	127783795	70238635	70	115201											
RAB7A	7879	broad.mit.edu	37	chr3	128483731	128483731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaagccacatcatcgcGgtcaaagttgtaagacacgg	9	12	3	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128483731	A	A	128483731	1	1	127	0	1	0	0	0	0	0	0	0	13062	1131	39	4		4	RAB7A	3	128483731	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	699936	128483731	69538699	71	115202											
IFT122	55764	broad.mit.edu	37	chr3	129195294	129195294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcggcttgggactgttgGggagcagaactcctgggtgt	18	7	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129195294	T	T	129195294	3	4	127	1	0	0	0	0	1	0	0	0	7625	1232	43	2	1148	2	IFT122	3	129195294	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	711563	129195294	68827136	72	115203											
OSTalpha	200931	broad.mit.edu	37	chr3	195954397	195954397	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttgcttgacttaattagTgctttttccagctggcaacg	10	8	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195954397	C	C	195954397	1	2	127	0	1	0	0	0	0	0	0	0	11394	1711	59	5		5	OSTalpha	3	195954397	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	66759103	195954397	2068033	73	115204											
KIAA1530	57654	broad.mit.edu	37	chr4	1360235	1360235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatggtgagcagtgggtccCgtggggggggcacctgggtg	22	7	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1360235	A	A	1360235	1	1	127	0	1	0	0	0	0	0	0	0	8311	667	23	1		1	KIAA1530	4	1360235	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08		1360235	189794041	74	115205											
HAUS3	79441	broad.mit.edu	37	chr4	2242244	2242246	+	In_Frame_Del	DEL	CTT	-	-													ctgcttcagctttttagtggCttcttcttctttagcattta					rs143139222		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2242246	-	-	2242244	7	5	127	1	0	1	0	1	0	0	0	0	7033	797	28	0	1397	0	HAUS3	4	2242244	In_Frame_Del	DEL	CTT	TCGA-44-6775-01A-11D-1855-08	882009	2242244	188912032	75	115206											
MAN2B2	23324	broad.mit.edu	37	chr4	6581031	6581031	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccatcaccaccaccatcaCcaccaccaccaccatcacca	0	24	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6581031	T	T	6581031	1	4	127	0	1	0	0	0	0	0	0	0	9309	522	18	4		4	MAN2B2	4	6581031	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	4338787	6581031	184573245	76	115207											
RFC1	5981	broad.mit.edu	37	chr4	39291651	39291651	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaagctcttgtgaaggcTgctttcacctatatgaaagg	10	7	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39291651	C	C	39291651	2	2	127	1	0	0	0	0	0	0	0	1	13352	1567	55	5		5	RFC1	4	39291651	Silent	SNP	T	TCGA-44-6775-01A-11D-1855-08	32710620	39291651	151862625	77	115208											
RBM47	54502	broad.mit.edu	37	chr4	40434861	40434861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacatggaatactgagccCcaatggcagggatggctact	12	9	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40434861	A	A	40434861	3	1	127	1	0	0	0	0	1	0	0	0	13249	623	22	2	440	2	RBM47	4	40434861	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	1143210	40434861	150719415	78	115209											
GABRA2	2555	broad.mit.edu	37	chr4	46252531	46252531	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcttggagatggtggagaGaactggatcttttgaaagat	13	4	2	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46252531	T	T	46252531	3	4	127	1	0	0	0	0	1	0	0	0	6221	942	33	3	209	3	GABRA2	4	46252531	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	5817670	46252531	144901745	79	115210											
GABRA4	2557	broad.mit.edu	37	chr4	46930366	46930366	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgtctattttacttgtgCcagatccagaaggtggtgga	11	6	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46930366	T	T	46930366	3	4	127	1	0	0	0	0	1	0	0	0	6223	739	26	4	127	4	GABRA4	4	46930366	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	677835	46930366	144223910	80	115211											
TEC	7006	broad.mit.edu	37	chr4	48151596	48151596	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcattgtgcttatgataTtcaataatctcaggaatgga	9	6	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48151596	A	A	48151596	3	1	127	1	0	0	0	0	1	0	0	0	15864	1490	52	5	943	5	TEC	4	48151596	Missense_Mutation	SNP	T	TCGA-44-6775-01A-11D-1855-08	1221230	48151596	143002680	81	115212											
SPATA18	132671	broad.mit.edu	37	chr4	52917980	52917980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtctgggtgaaaaaccccCggggttcgccctcccatagg	13	13	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52917980	A	A	52917980	1	1	127	0	1	0	0	0	0	0	0	0	15119	667	23	1		1	SPATA18	4	52917980	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	4766384	52917980	138236296	82	115213											
YTHDC1	91746	broad.mit.edu	37	chr4	69182124	69182124	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtggagcatggtgctgatAgtaaggatggtgtggaggtt	19	2	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69182124	T	T	69182124	3	4	127	1	0	0	0	0	1	0	0	0	17623	420	15	5	324	5	YTHDC1	4	69182124	Missense_Mutation	SNP	A	TCGA-44-6775-01A-11D-1855-08	16264144	69182124	121972152	83	115214											
SHROOM3	57619	broad.mit.edu	37	chr4	77660332	77660332	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcaaggtagggaggccCgagcctcagcaaatggtcag	14	10	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77660332	A	A	77660332	2	1	127	1	0	0	0	0	0	0	0	1	14408	644	23	1		1	SHROOM3	4	77660332	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	8478208	77660332	113493944	84	115215											
IBSP	3381	broad.mit.edu	37	chr4	88732809	88732809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaacctctccaaatggtgGgtttgaacctacaaccccac	6	14	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88732809	T	T	88732809	3	4	127	1	0	0	0	0	1	0	0	0	7545	1232	43	2	723	2	IBSP	4	88732809	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	11072477	88732809	102421467	85	115216											
ADH4	127	broad.mit.edu	37	chr4	100048344	100048345	+	Intron	INS	-	A	A													aagaatttaaagctatgaagINSaaaaaaaaaactgaccacca					rs4148891		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100048345	A	A	100048344	6	5	127	0	1	1	1	0	0	0	0	0	310	957	33	0		0	ADH4	4	100048344	Intron	INS	-	TCGA-44-6775-01A-11D-1855-08	11315535	100048344	91105932	86	115217											
ENPEP	2028	broad.mit.edu	37	chr4	111412351	111412351	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatattttaaaaatttaccAcctatgcatttgtaattaat	2	5	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111412351	C	C	111412351	1	2	127	0	1	0	0	0	0	0	0	0	5170	174	6	5		5	ENPEP	4	111412351	Intron	SNP	A	TCGA-44-6775-01A-11D-1855-08	11364007	111412351	79741925	87	115218											
ALPK1	80216	broad.mit.edu	37	chr4	113277449	113277449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgctgtgcctcctgtgcacCaccctggcctggcgagaaca	11	16	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113277449	A	A	113277449	1	1	127	0	1	0	0	0	0	0	0	0	544	609	21	2		2	ALPK1	4	113277449	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	1865098	113277449	77876827	88	115219											
RAPGEF2	9693	broad.mit.edu	37	chr4	160274997	160274997	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgaacaagcccagtccCgagcaagctgggcgtcttcc	11	15	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160274997	A	A	160274997	2	1	127	1	0	0	0	0	0	0	0	1	13152	644	23	1		1	RAPGEF2	4	160274997	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	46997548	160274997	30879279	89	115220											
ANKRD37	353322	broad.mit.edu	37	chr4	186318034	186318034	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcggcgagtgtctcaccTctctgcacttccaaggactc	11	14	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186318034	C	C	186318034	1	2	127	0	1	0	0	0	0	0	0	0	667	1566	54	5		5	ANKRD37	4	186318034	5'UTR	SNP	T	TCGA-44-6775-01A-11D-1855-08	26043037	186318034	4836242	90	115221											
TRIML2	205860	broad.mit.edu	37	chr4	189013145	189013145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagttcaccaatgccaatGccagagacatgatttctaac	8	10	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189013145	T	T	189013145	1	4	127	0	1	0	0	0	0	0	0	0	16676	1334	46	3		3	TRIML2	4	189013145	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	2695111	189013145	2141131	91	115222											
CDH18	1016	broad.mit.edu	37	chr5	19612631	19612631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctccaacttgcccagcCatgtctttggcttgaatgac	8	14	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19612631	A	A	19612631	3	1	127	1	0	0	0	0	1	0	0	0	3133	594	21	2	1681	2	CDH18	5	19612631	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08		19612631	161302629	92	115223											
CDH9	1007	broad.mit.edu	37	chr5	26903797	26903797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttgtcagtgatgacatcGaacatgtctgcaccatctcc	7	13	3	2	rs143973229		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26903797	T	T	26903797	3	4	127	1	0	0	0	0	1	0	0	0	3147	1049	37	3	1449	3	CDH9	5	26903797	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	7291166	26903797	154011463	93	115224											
ADAMTS12	81792	broad.mit.edu	37	chr5	33546240	33546240	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatgtgggtctttttgtcCaatcacagaggcctcctgga	12	9	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33546240	T	T	33546240	4	4	127	1	0	0	0	0	0	1	0	0	257	595	21	4	426	4	ADAMTS12	5	33546240	Nonsense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	6642443	33546240	147369020	94	115225											
ADAMTS12	81792	broad.mit.edu	37	chr5	33648815	33648815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccttgccttaaatataaaGcttctatttctgtgtctgga	6	9	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33648815	A	A	33648815	1	1	127	0	1	0	0	0	0	0	0	0	257	986	34	4		4	ADAMTS12	5	33648815	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	102575	33648815	147266445	95	115226											
FBXO4	26272	broad.mit.edu	37	chr5	41934094	41934094	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaacaaccaacataaattCaacattctaatcttatattc	1	9	3	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41934094	T	T	41934094	2	4	127	1	0	0	0	0	0	0	0	1	5805	825	29	4		4	FBXO4	5	41934094	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	8285279	41934094	138981166	96	115227											
PAIP1	10605	broad.mit.edu	37	chr5	43555957	43555957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggaagaataacctgaaGggtaaaattcaggggcattc	11	6	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43555957	T	T	43555957	3	4	127	1	0	0	0	0	1	0	0	0	11490	1000	35	2	1069	2	PAIP1	5	43555957	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	1621863	43555957	137359303	97	115228											
CWC27	10283	broad.mit.edu	37	chr5	64070566	64070566	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgacatagagttgtggtccAaagaagctcctaaagcttgc	10	8	0	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64070566	G	G	64070566	3	3	127	1	0	0	0	0	1	0	0	0	4103	131	5	5	97	5	CWC27	5	64070566	Missense_Mutation	SNP	A	TCGA-44-6775-01A-11D-1855-08	20514609	64070566	116844694	98	115229											
AP3B1	8546	broad.mit.edu	37	chr5	77424937	77424937	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atattttggagttatattctGataatacctttaaaaggaga	7	3	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77424937	A	A	77424937	1	1	127	0	1	0	0	0	0	0	0	0	746	1305	45	4		4	AP3B1	5	77424937	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	13354371	77424937	103490323	99	115230											
SPATA9	83890	broad.mit.edu	37	chr5	95011208	95011208	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaagtctgcatgcaagctGaggatgcagaagtttggcca	12	7	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95011208	A	A	95011208	4	1	127	1	0	0	0	0	0	1	0	0	15132	1299	45	4	490	4	SPATA9	5	95011208	Nonsense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	17586271	95011208	85904052	100	115231											
NRG2	9542	broad.mit.edu	37	chr5	139228220	139228220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaagttggcacctgcgtgGccagcgagtagtggaagtcc	15	10	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139228220	T	T	139228220	3	4	127	1	0	0	0	0	1	0	0	0	10743	1203	42	3	721	3	NRG2	5	139228220	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	44217012	139228220	41687040	101	115232											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719807	140719807	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttacaacatcactctaacCgctaaagatggagggaaccc	7	11	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140719807	A	A	140719807	2	1	127	1	0	0	0	0	0	0	0	1	11648	639	23	1		1	PCDHGA2	5	140719807	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	1491587	140719807	40195453	102	115233											
PCDHGA9	56107	broad.mit.edu	37	chr5	140782870	140782870	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagacagagtgaaactgtaCggaatagaaatagaagtaac	11	4	0	5			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140782870	T	T	140782870	2	4	127	1	0	0	0	0	0	0	0	1	11655	547	19	4		4	PCDHGA9	5	140782870	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	63063	140782870	40132390	103	115234											
SLU7	10569	broad.mit.edu	37	chr5	159839549	159839549	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaaaaaaaaaaaaaagaaaGaaagaaagaaaaagtaaaca	5	1	0	4	rs35938216		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159839549	A	A	159839549	1	1	127	0	1	0	0	0	0	0	0	0	14869	957	33	4		4	SLU7	5	159839549	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	19056679	159839549	21075711	104	115235											
DRD1	1812	broad.mit.edu	37	chr5	174870117	174870117	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcatcttcctaagagaaaGcacatcaggggctctgacac	8	13	4	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174870117	A	A	174870117	1	1	127	0	1	0	0	0	0	0	0	0	4796	986	34	4		4	DRD1	5	174870117	5'UTR	SNP	G	TCGA-44-6775-01A-11D-1855-08	15030568	174870117	6045143	105	115236											
NSD1	64324	broad.mit.edu	37	chr5	176707499	176707499	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggaaaaaaagtttgccTttttcaggacgtgaattgtc	9	6	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176707499	C	C	176707499	1	2	127	0	1	0	0	0	0	0	0	0	10764	1624	56	5		5	NSD1	5	176707499	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	1837382	176707499	4207761	106	115237											
SCML4	256380	broad.mit.edu	37	chr6	108070973	108070973	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgggctctggggtactccgCggaggtgagagggctaaggg	20	8	1	1	rs148891280		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108070973	T	T	108070973	2	4	127	1	0	0	0	0	0	0	0	1	14024	755	27	4		4	SCML4	6	108070973	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08		108070973	63044094	107	115238											
GPER	2852	broad.mit.edu	37	chr7	1131386	1131386	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgtgacttcccaagccCggggcgtgggcctggagatg	17	10	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1131386	A	A	1131386	2	1	127	1	0	0	0	0	0	0	0	1	6672	643	23	1		1	GPER	7	1131386	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08		1131386	158007277	108	115239											
TMEM184A	202915	broad.mit.edu	37	chr7	1590079	1590079	+	Intron	DEL	G	-	-													tgtgagccctgagctgcaccGggaccccatggcgcccatct							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1590079	-	-	1590079	6	5	127	0	1	1	0	1	0	0	0	0	16227	1131	39	0		0	TMEM184A	7	1590079	Intron	DEL	G	TCGA-44-6775-01A-11D-1855-08	458693	1590079	157548584	109	115240											
RNF216	54476	broad.mit.edu	37	chr7	5781398	5781398	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttcagatcttgccactGggcagctggtttgatgagat	11	9	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5781398	T	T	5781398	1	4	127	0	1	0	0	0	0	0	0	0	13591	1357	47	2		2	RNF216	7	5781398	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	4191319	5781398	153357265	110	115241											
EIF2AK1	27102	broad.mit.edu	37	chr7	6080556	6080556	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagttgacattttcttcGgaagattcttcggtggatgt	10	5	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6080556	T	T	6080556	2	4	127	1	0	0	0	0	0	0	0	1	5036	1103	39	1		1	EIF2AK1	7	6080556	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	299158	6080556	153058107	111	115242											
IGF2BP3	10643	broad.mit.edu	37	chr7	23353087	23353087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacttggaactcctaagtaCctttcaacgctttccctttc	6	13	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23353087	A	A	23353087	1	1	127	0	1	0	0	0	0	0	0	0	7645	522	18	3		3	IGF2BP3	7	23353087	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	17272531	23353087	135785576	112	115243											
ELMO1	9844	broad.mit.edu	37	chr7	37311411	37311411	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagagcaaagagtttgctgGaagtcagaagctaagatcaa	12	6	2	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37311411	A	A	37311411	1	1	127	0	1	0	0	0	0	0	0	0	5107	1189	41	4		4	ELMO1	7	37311411	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	13958324	37311411	121827252	113	115244											
AEBP1	165	broad.mit.edu	37	chr7	44149709	44149709	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggggcacagcgcggcCggctcaacatgcaggtgggc	18	13	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44149709	T	T	44149709	3	4	127	1	0	0	0	0	1	0	0	0	349	643	23	4	1284	4	AEBP1	7	44149709	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	6838298	44149709	114988954	114	115245											
TBL2	26608	broad.mit.edu	37	chr7	72985560	72985560	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaacgagtgcacagccgcGgagtggccctttagttcgaa	13	11	0	0	rs150420769		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72985560	T	T	72985560	2	4	127	1	0	0	0	0	0	0	0	1	15764	1103	39	1		1	TBL2	7	72985560	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	28835851	72985560	86153103	115	115246											
BET1	10282	broad.mit.edu	37	chr7	93633704	93633704	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccggatgatggcgtcaccaCggcgctcattggagccctgg	15	13	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93633704	G	G	93633704	1	3	127	0	1	0	0	0	0	0	0	0	1413	551	19	4		4	BET1	7	93633704	5'Flank	SNP	C	TCGA-44-6775-01A-11D-1855-08	20648144	93633704	65504959	116	115247											
PPP1R9A	55607	broad.mit.edu	37	chr7	94540005	94540005	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggacagccttagctccCgaactgaggctgtctcccca	9	16	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94540005	A	A	94540005	2	1	127	1	0	0	0	0	0	0	0	1	12479	644	23	1		1	PPP1R9A	7	94540005	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	906301	94540005	64598658	117	115248											
ZCWPW1	55063	broad.mit.edu	37	chr7	100013512	100013512	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattgactatattctttgcaGaggttcctctaacatcctaa	6	9	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100013512	C	C	100013512	1	2	127	0	1	0	0	0	0	0	0	0	17723	957	33	4		4	ZCWPW1	7	100013512	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	5473507	100013512	59125151	118	115249											
BCAP29	55973	broad.mit.edu	37	chr7	107234620	107234620	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctttctcattttgtccAcctttactgtagattttttt	3	9	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107234620	C	C	107234620	1	2	127	0	1	0	0	0	0	0	0	0	1351	174	6	5		5	BCAP29	7	107234620	Intron	SNP	A	TCGA-44-6775-01A-11D-1855-08	7221108	107234620	51904043	119	115250											
CTTNBP2	83992	broad.mit.edu	37	chr7	117368345	117368345	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagacagggaggtggaacCcaggggcttggtttagaaca	17	6	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117368345	G	G	117368345	1	3	127	0	1	0	0	0	0	0	0	0	4079	638	22	4		4	CTTNBP2	7	117368345	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	10133725	117368345	41770318	120	115251											
SSPO	23145	broad.mit.edu	37	chr7	149481106	149481106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctggttgtaactgtcCtctggggctgctgtgggacc	16	9	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149481106	A	A	149481106	3	1	127	1	0	0	0	0	1	0	0	0	15307	681	24	2	2656	2	SSPO	7	149481106	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	32112761	149481106	9657557	121	115252											
PPP1R3B	79660	broad.mit.edu	37	chr8	8998685	8998685	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtcatccttattttcacGgtcttctcaaatgcgaggtt	7	10	4	0	rs141460324	byFrequency	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8998685	T	T	8998685	2	4	127	1	0	0	0	0	0	0	0	1	12473	1103	39	1		1	PPP1R3B	8	8998685	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08		8998685	137365337	122	115253											
NEFM	4741	broad.mit.edu	37	chr8	24775338	24775338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggcaagtctcctgtgcCgaaatcaccagtggaagaga	12	9	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24775338	A	A	24775338	3	1	127	1	0	0	0	0	1	0	0	0	10411	652	23	1	1980	1	NEFM	8	24775338	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	15776653	24775338	121588684	123	115254											
KCNB2	9312	broad.mit.edu	37	chr8	73848238	73848238	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctctcaatacgctgccGgagctgcaggaaacggacga	12	11	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73848238	A	A	73848238	2	1	127	1	0	0	0	0	0	0	0	1	8083	1103	39	4		4	KCNB2	8	73848238	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	49072900	73848238	72515784	124	115255											
ANGPT1	284	broad.mit.edu	37	chr8	108315640	108315640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatatgtgaatatcagtacCattagtagccaaactgactc	6	9	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108315640	A	A	108315640	1	1	127	0	1	0	0	0	0	0	0	0	610	609	21	2		2	ANGPT1	8	108315640	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	34467402	108315640	38048382	125	115256											
CSMD3	114788	broad.mit.edu	37	chr8	113323388	113323388	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggattctggtgtactacaGtagaaagcttttcaaaagaa	11	5	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113323388	T	T	113323388	4	4	127	1	0	0	0	0	0	1	0	0	3980	1024	36	3	3507	3	CSMD3	8	113323388	Nonsense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	5007748	113323388	33040634	126	115257											
TAF2	6873	broad.mit.edu	37	chr8	120816177	120816177	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctctctgccatacttccCtctacactgggtaccacaaa	4	17	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120816177	T	T	120816177	2	4	127	1	0	0	0	0	0	0	0	1	15643	680	24	4		4	TAF2	8	120816177	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	7492789	120816177	25547845	127	115258											
KIAA0196	9897	broad.mit.edu	37	chr8	126075826	126075826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagcaagctcagtcatcCgctccgaaccctctttcttg	6	16	5	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126075826	A	A	126075826	3	1	127	1	0	0	0	0	1	0	0	0	8231	652	23	1	2209	1	KIAA0196	8	126075826	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	5259649	126075826	20288196	128	115259											
CYP11B2	1585	broad.mit.edu	37	chr8	143997373	143997373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacatgcacacgtgcgccCatgcaagacctcaacaccat	7	16	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143997373	A	A	143997373	1	1	127	0	1	0	0	0	0	0	0	0	4179	609	21	2		2	CYP11B2	8	143997373	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	17921547	143997373	2366649	129	115260											
MPDZ	8777	broad.mit.edu	37	chr9	13162689	13162689	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagatttaatgtttcacttaCctgccagtgtatgaagaaaa	7	6	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13162689	A	A	13162689	5	1	127	1	0	0	0	0	0	0	1	0	9816	521	18	3	2861	3	MPDZ	9	13162689	Splice_Site	SNP	C	TCGA-44-6775-01A-11D-1855-08		13162689	128050742	130	115261											
FREM1	158326	broad.mit.edu	37	chr9	14770702	14770702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgatgccttcaacacgcGggaagtgatgtaaatcccgt	11	10	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14770702	T	T	14770702	3	4	127	1	0	0	0	0	1	0	0	0	6104	1116	39	1	1627	1	FREM1	9	14770702	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	1608013	14770702	126442729	131	115262											
MLLT3	4300	broad.mit.edu	37	chr9	20414277	20414278	+	In_Frame_Ins	INS	-	CTG	CTG													gctttgaaaaactggtactaINSctgctgctgctgctgctgct							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTG	20414278	CTG	CTG	20414277	7	5	127	1	0	1	1	0	0	0	0	0	9721	388	14	0	1167	0	MLLT3	9	20414277	In_Frame_Ins	INS	-	TCGA-44-6775-01A-11D-1855-08	5643575	20414277	120799154	132	115263											
DDX58	23586	broad.mit.edu	37	chr9	32480337	32480337	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatgctcactgataatgaGggcatcattatatttctgtt	8	7	3	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32480337	T	T	32480337	3	4	127	1	0	0	0	0	1	0	0	0	4408	1000	35	2	1151	2	DDX58	9	32480337	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	12066060	32480337	108733094	133	115264											
TRPM6	140803	broad.mit.edu	37	chr9	77502858	77502858	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctccacctccacacgctGccttttacagcccagtggat	9	16	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77502858	T	T	77502858	1	4	127	0	1	0	0	0	0	0	0	0	16715	1334	46	3		3	TRPM6	9	77502858	5'UTR	SNP	G	TCGA-44-6775-01A-11D-1855-08	45022521	77502858	63710573	134	115265											
VPS13A	23230	broad.mit.edu	37	chr9	79946930	79946930	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtttttctttcccagataaGaaatcatttttcagtcccac	4	10	3	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79946930	A	A	79946930	3	1	127	1	0	0	0	0	1	0	0	0	17316	942	33	4	6178	4	VPS13A	9	79946930	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	2444072	79946930	61266501	135	115266											
SMC2	10592	broad.mit.edu	37	chr9	106892020	106892020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttcaaaactaacaaccCtaaagaagctggtcagagac	7	9	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106892020	A	A	106892020	3	1	127	1	0	0	0	0	1	0	0	0	14897	681	24	2	2963	2	SMC2	9	106892020	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	26945090	106892020	34321411	136	115267											
PTGR1	22949	broad.mit.edu	37	chr9	114348297	114348297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggcatgccaactgtccCcagagccaaagacagtggta	10	14	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114348297	A	A	114348297	3	1	127	1	0	0	0	0	1	0	0	0	12859	623	22	2	686	2	PTGR1	9	114348297	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	7456277	114348297	26865134	137	115268											
TNC	3371	broad.mit.edu	37	chr9	117791710	117791710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttttggtagaagttctcgCgtccgtttttgcgtctcagg	12	8	2	1	rs112853515		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117791710	A	A	117791710	3	1	127	1	0	0	0	0	1	0	0	0	16393	768	27	3	523	3	TNC	9	117791710	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	3443413	117791710	23421721	138	115269											
MEGF9	1955	broad.mit.edu	37	chr9	123370269	123370269	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttacactggtcacattcAggttccaattcactcgattc	5	12	4	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123370269	G	G	123370269	2	3	127	1	0	0	0	0	0	0	0	1	9557	175	7	5		5	MEGF9	9	123370269	Silent	SNP	A	TCGA-44-6775-01A-11D-1855-08	5578559	123370269	17843162	139	115270											
PSMD5	5711	broad.mit.edu	37	chr9	123593720	123593720	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgggttagtgatattctTgacagggatttgatagcctt	12	5	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123593720	C	C	123593720	2	2	127	1	0	0	0	0	0	0	0	1	12807	1799	63	5		5	PSMD5	9	123593720	Silent	SNP	T	TCGA-44-6775-01A-11D-1855-08	223451	123593720	17619711	140	115271											
GSN	2934	broad.mit.edu	37	chr9	124080760	124080760	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccaagatggactacccCaagcagactcaggtgagtct	9	12	3	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124080760	A	A	124080760	2	1	127	1	0	0	0	0	0	0	0	1	6891	581	21	2		2	GSN	9	124080760	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	487040	124080760	17132671	141	115272											
GARNL3	84253	broad.mit.edu	37	chr9	130094645	130094645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtgagtgatctcctccCgctctctgctgccagagacc	10	14	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130094645	A	A	130094645	1	1	127	0	1	0	0	0	0	0	0	0	6303	667	23	1		1	GARNL3	9	130094645	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	6013885	130094645	11118786	142	115273											
GLE1	2733	broad.mit.edu	37	chr9	131285142	131285142	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgttgatgtgttcaactgGaactctttcccaagaggaat	9	7	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131285142	A	A	131285142	1	1	127	0	1	0	0	0	0	0	0	0	6499	1189	41	4		4	GLE1	9	131285142	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	1190497	131285142	9928289	143	115274											
AIF1L	83543	broad.mit.edu	37	chr9	133987029	133987029	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgatgaagagaaccttccaGaaaagctcacagccttcaaa	8	10	2	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133987029	A	A	133987029	3	1	127	1	0	0	0	0	1	0	0	0	425	943	33	4	231	4	AIF1L	9	133987029	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	2701887	133987029	7226402	144	115275											
BRD3	8019	broad.mit.edu	37	chr9	136913605	136913605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaataaccagtgaacccCggaaaccaggggccccgaag	12	12	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136913605	A	A	136913605	1	1	127	0	1	0	0	0	0	0	0	0	1512	667	23	1		1	BRD3	9	136913605	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	2926576	136913605	4299826	145	115276											
ARHGAP21	57584	broad.mit.edu	37	chr10	24889824	24889824	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccccgaaggacaacataCatctgtttccatggccgaat	8	12	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24889824	A	A	24889824	3	1	127	1	0	0	0	0	1	0	0	0	873	478	17	3	3045	3	ARHGAP21	10	24889824	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08		24889824	110644923	146	115277											
LRRTM3	347731	broad.mit.edu	37	chr10	68686705	68686705	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaattaggctactgagcGgatcagctgtagcactggtt	12	7	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68686705	T	T	68686705	4	4	127	1	0	0	0	0	0	1	0	0	9128	1117	39	1	37	1	LRRTM3	10	68686705	Nonsense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	43796881	68686705	66848042	147	115278											
STK33	65975	broad.mit.edu	37	chr11	8483329	8483329	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataataacaactttcaaaaTgcagcgcctaatagaggttt	6	7	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8483329	C	C	8483329	1	2	127	0	1	0	0	0	0	0	0	0	15418	1479	51	5		5	STK33	11	8483329	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08		8483329	126523187	148	115279											
SBF2	81846	broad.mit.edu	37	chr11	9834135	9834135	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtcacttctgagtcagTagggatggtgcttgggatac	15	6	3	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9834135	C	C	9834135	3	2	127	1	0	0	0	0	1	0	0	0	13971	1638	57	5	1494	5	SBF2	11	9834135	Missense_Mutation	SNP	T	TCGA-44-6775-01A-11D-1855-08	1350806	9834135	125172381	149	115280											
KCNA4	3739	broad.mit.edu	37	chr11	30032876	30032876	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttgaagatccggaatacTcggaccagacgaatgattct	10	8	1	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30032876	C	C	30032876	2	2	127	1	0	0	0	0	0	0	0	1	8075	1538	54	5		5	KCNA4	11	30032876	Silent	SNP	T	TCGA-44-6775-01A-11D-1855-08	20198741	30032876	104973640	150	115281											
QSER1	79832	broad.mit.edu	37	chr11	32956619	32956619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtggaggaaaaacaacCagaagtcaaaacaggattta	11	5	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32956619	A	A	32956619	3	1	127	1	0	0	0	0	1	0	0	0	12990	594	21	2	3434	2	QSER1	11	32956619	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	2923743	32956619	102049897	151	115282											
FNBP4	23360	broad.mit.edu	37	chr11	47745922	47745922	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatataggcgtgagccacCgtgcccggcctttaaacata	11	11	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47745922	T	T	47745922	1	4	127	0	1	0	0	0	0	0	0	0	6025	667	23	4		4	FNBP4	11	47745922	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	14789303	47745922	87260594	152	115283											
OR4C6	219432	broad.mit.edu	37	chr11	55432857	55432857	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttttggatgtcatgttctCatctgtcgttgcccccaagg	9	12	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55432857	T	T	55432857	3	4	127	1	0	0	0	0	1	0	0	0	11146	838	29	4	217	4	OR4C6	11	55432857	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	7686935	55432857	79573659	153	115284											
ZFP91	80829	broad.mit.edu	37	chr11	58378451	58378451	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaagaggaggaggaagaaGagatgttaatcagtgaagag	17	1	1	5			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58378451	A	A	58378451	3	1	127	1	0	0	0	0	1	0	0	0	17781	943	33	4	664	4	ZFP91	11	58378451	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	2945594	58378451	76628065	154	115285											
GLYATL1	92292	broad.mit.edu	37	chr11	58723154	58723154	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtaaatgacaactggaagcGagggaagaatgagaggagcc	16	5	0	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58723154	A	A	58723154	3	1	127	1	0	0	0	0	1	0	0	0	6544	1058	37	4	682	4	GLYATL1	11	58723154	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	344703	58723154	76283362	155	115286											
TAF6L	10629	broad.mit.edu	37	chr11	62549737	62549737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagccactggctgcctcCatcaaccccctgaatgacca	8	17	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62549737	A	A	62549737	2	1	127	1	0	0	0	0	0	0	0	1	15650	581	21	2		2	TAF6L	11	62549737	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	3826583	62549737	72456779	156	115287											
STX5	6811	broad.mit.edu	37	chr11	62591576	62591577	+	Intron	DEL	TA	-	-													caagcagtccctggggacttTaagatgccaatccacgggga							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62591577	-	-	62591576	6	5	127	0	1	1	0	1	0	0	0	0	15466	1769	61	0		0	STX5	11	62591576	Intron	DEL	TA	TCGA-44-6775-01A-11D-1855-08	41839	62591576	72414940	157	115288											
SLC22A6	9356	broad.mit.edu	37	chr11	62744846	62744846	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatggtgctgcccattcCcatgcctgtctgcctgcagg	12	15	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62744846	A	A	62744846	4	1	127	1	0	0	0	0	0	1	0	0	14572	632	22	2	324	2	SLC22A6	11	62744846	Nonsense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	153270	62744846	72261670	158	115289											
BBS1	582	broad.mit.edu	37	chr11	66294224	66294224	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgaaactcaatgtgcccCgaaagacccggctttacgtg	9	13	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66294224	A	A	66294224	2	1	127	1	0	0	0	0	0	0	0	1	1340	644	23	1		1	BBS1	11	66294224	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	3549378	66294224	68712292	159	115290											
TPCN2	219931	broad.mit.edu	37	chr11	68844283	68844283	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgccatgtccctccacCtgccctcctgccctcgtgcc	6	23	0	0	rs146551008	by1000genomes	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68844283	T	T	68844283	1	4	127	0	1	0	0	0	0	0	0	0	16520	696	24	4		4	TPCN2	11	68844283	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	2550059	68844283	66162233	160	115291											
ARHGEF17	9828	broad.mit.edu	37	chr11	73071533	73071533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttccctcaccctgacgccCgccttggttttgaacaggcc	9	16	1	2	rs145408684		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73071533	A	A	73071533	3	1	127	1	0	0	0	0	1	0	0	0	902	652	23	1	4417	1	ARHGEF17	11	73071533	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	4227250	73071533	61934983	161	115292											
LRRC32	2615	broad.mit.edu	37	chr11	76376847	76376847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctggcttctggggctgGggcactagcacaccctaggg	14	12	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76376847	T	T	76376847	1	4	127	0	1	0	0	0	0	0	0	0	9074	1247	43	2		2	LRRC32	11	76376847	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	3305314	76376847	58629669	162	115293											
EXPH5	23086	broad.mit.edu	37	chr11	108380300	108380300	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcattttcatccaggtaGtattcatcatctgtggttgt	8	7	5	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108380300	C	C	108380300	4	2	127	1	0	0	0	0	0	1	0	0	5365	1024	36	4	39	4	EXPH5	11	108380300	Nonsense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	32003453	108380300	26626216	163	115294											
BCL9L	283149	broad.mit.edu	37	chr11	118770846	118770847	+	Frame_Shift_Ins	INS	-	C	C													ggctggggttcatgaggccgINSctgggagggttggcgggagg					rs139315833	byFrequency	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118770847	C	C	118770846	7	5	127	1	0	1	1	0	0	0	0	0	1387	1078	38	0	1321	0	BCL9L	11	118770846	Frame_Shift_Ins	INS	-	TCGA-44-6775-01A-11D-1855-08	10390546	118770846	16235670	164	115295											
STT3A	3703	broad.mit.edu	37	chr11	125477858	125477858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatggctggtgaattaaaCccttccctagattggccctg	9	10	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125477858	A	A	125477858	1	1	127	0	1	0	0	0	0	0	0	0	15451	522	18	3		3	STT3A	11	125477858	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	6707012	125477858	9528658	165	115296											
ST14	6768	broad.mit.edu	37	chr11	130064019	130064019	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggttctgtctgctcttccTaatgcccgccctctgccccc	8	18	4	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130064019	C	C	130064019	1	2	127	0	1	0	0	0	0	0	0	0	15329	1537	53	5		5	ST14	11	130064019	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	4586161	130064019	4942497	166	115297											
PRICKLE1	144165	broad.mit.edu	37	chr12	42863218	42863218	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccccatccacatcactgCcacaagctacgcatcagaga	5	18	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42863218	T	T	42863218	1	4	127	0	1	0	0	0	0	0	0	0	12592	754	26	4		4	PRICKLE1	12	42863218	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08		42863218	90988677	167	115298											
SFRS2IP	9169	broad.mit.edu	37	chr12	46326839	46326839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaattgaataaggtaccCttgtacttaagtactaatgc	6	7	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46326839	A	A	46326839	1	1	127	0	1	0	0	0	0	0	0	0	14290	696	24	2		2	SFRS2IP	12	46326839	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	3463621	46326839	87525056	168	115299											
COL2A1	1280	broad.mit.edu	37	chr12	48391710	48391710	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttcccctgcaggtccctGaaggtgaagaacatggtaag	12	9	0	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48391710	A	A	48391710	1	1	127	0	1	0	0	0	0	0	0	0	3719	1305	45	4		4	COL2A1	12	48391710	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	2064871	48391710	85460185	169	115300											
DDX23	9416	broad.mit.edu	37	chr12	49233759	49233759	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatcaacaaagcaacgcaCgagttgaagatgaaaaatat	8	6	1	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49233759	T	T	49233759	1	4	127	0	1	0	0	0	0	0	0	0	4383	551	19	4		4	DDX23	12	49233759	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	842049	49233759	84618136	170	115301											
LASS5	91012	broad.mit.edu	37	chr12	50532279	50532279	+	Intron	DEL	G	-	-													caccatctgtcctggggactGgcaaaggaccctcactcact							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50532279	-	-	50532279	6	5	127	0	1	1	0	1	0	0	0	0	8714	1363	47	0		0	LASS5	12	50532279	Intron	DEL	G	TCGA-44-6775-01A-11D-1855-08	1298520	50532279	83319616	171	115302											
FAM19A2	338811	broad.mit.edu	37	chr12	62104092	62104092	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagcgcctctttcaagtggTataaaaatcttcaagatcac	7	9	5	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62104092	C	C	62104092	1	2	127	0	1	0	0	0	0	0	0	0	5579	1653	57	5		5	FAM19A2	12	62104092	3'UTR	SNP	T	TCGA-44-6775-01A-11D-1855-08	11571813	62104092	71747803	172	115303											
RBM19	9904	broad.mit.edu	37	chr12	114403975	114403975	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtctcatttcagattccCaagtcctgcctctgcactca	6	15	4	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114403975	T	T	114403975	1	4	127	0	1	0	0	0	0	0	0	0	13229	609	21	4		4	RBM19	12	114403975	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	52299883	114403975	19447920	173	115304											
C12orf43	64897	broad.mit.edu	37	chr12	121441899	121441899	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaatgccttgtccccaGggtgggggggacaccttgtc	15	10	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121441899	T	T	121441899	1	4	127	0	1	0	0	0	0	0	0	0	1702	1015	35	2		2	C12orf43	12	121441899	3'UTR	SNP	G	TCGA-44-6775-01A-11D-1855-08	7037924	121441899	12409996	174	115305											
UBC	7316	broad.mit.edu	37	chr12	125398104	125398104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatcccacctctgagacGgagcaccaggtgcagggtgg	14	12	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125398104	T	T	125398104	3	4	127	1	0	0	0	0	1	0	0	0	16968	1116	39	1	1847	1	UBC	12	125398104	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	3956205	125398104	8453791	175	115306											
ZMYM5	9205	broad.mit.edu	37	chr13	20411811	20411811	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacctctgctaatttactAcaaattgtacatcttgactt	4	10	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20411811	G	G	20411811	2	3	127	1	0	0	0	0	0	0	0	1	17829	389	14	5		5	ZMYM5	13	20411811	Silent	SNP	A	TCGA-44-6775-01A-11D-1855-08		20411811	94758067	176	115307											
KATNAL1	84056	broad.mit.edu	37	chr13	30829613	30829613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctccctcttgctctatagtCcttgtccctacttgtagaag	6	13	3	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30829613	A	A	30829613	3	1	127	1	0	0	0	0	1	0	0	0	8055	855	30	3	1041	3	KATNAL1	13	30829613	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	10417802	30829613	84340265	177	115308											
SMAD9	4093	broad.mit.edu	37	chr13	37439592	37439592	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggcacatgaccaacatgtGagggtggtcacgtgcacttc	14	10	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37439592	A	A	37439592	1	1	127	0	1	0	0	0	0	0	0	0	14878	1305	45	4		4	SMAD9	13	37439592	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	6609979	37439592	77730286	178	115309											
RB1	5925	broad.mit.edu	37	chr13	49030371	49030372	+	Frame_Shift_Ins	INS	-	T	T													tgtaagatctccaaagaaaaINSaaggttcaactacgcgtgta							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49030372	T	T	49030371	7	5	127	1	0	1	1	0	0	0	0	0	13206	15	1	0	1920	0	RB1	13	49030371	Frame_Shift_Ins	INS	-	TCGA-44-6775-01A-11D-1855-08	11590779	49030371	66139507	179	115310											
UGGT2	55757	broad.mit.edu	37	chr13	96579553	96579553	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacattattcctatccattAgaaaatcaattgcattcgtg	4	9	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96579553	G	G	96579553	3	3	127	1	0	0	0	0	1	0	0	0	17068	420	15	5	2623	5	UGGT2	13	96579553	Missense_Mutation	SNP	A	TCGA-44-6775-01A-11D-1855-08	47549182	96579553	18590325	180	115311											
TM9SF2	9375	broad.mit.edu	37	chr13	100204462	100204462	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataatgaatctgatcctctGgggagaaggatcttcagcag	11	7	4	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100204462	T	T	100204462	3	4	127	1	0	0	0	0	1	0	0	0	16101	1357	47	2	1420	2	TM9SF2	13	100204462	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	3624909	100204462	14965416	181	115312											
RBM23	55147	broad.mit.edu	37	chr14	23374695	23374695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgttgagaccagccctcCcaatacctggtcattgttct	8	12	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23374695	A	A	23374695	1	1	127	0	1	0	0	0	0	0	0	0	13231	638	22	2		2	RBM23	14	23374695	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08		23374695	83974845	182	115313											
C14orf106	55320	broad.mit.edu	37	chr14	45687540	45687540	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgacatgtttctgggatccTtttcctctgggattttccat	9	9	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45687540	C	C	45687540	2	2	127	1	0	0	0	0	0	0	0	1	1751	1606	56	5		5	C14orf106	14	45687540	Silent	SNP	T	TCGA-44-6775-01A-11D-1855-08	22312845	45687540	61662000	183	115314											
CNIH	10175	broad.mit.edu	37	chr14	54897078	54897078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcattcatgatggttgtaGggtcatagagtcctgggcca	13	8	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54897078	T	T	54897078	3	4	127	1	0	0	0	0	1	0	0	0	3634	1000	35	2	134	2	CNIH	14	54897078	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	9209538	54897078	52452462	184	115315											
PSEN1	5663	broad.mit.edu	37	chr14	73659504	73659504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgattagtgccctcatggCcctggtgtttatcaagtacc	9	10	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73659504	A	A	73659504	3	1	127	1	0	0	0	0	1	0	0	0	12756	739	26	3	719	3	PSEN1	14	73659504	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	18762426	73659504	33690036	185	115316											
PPP2R5C	5527	broad.mit.edu	37	chr14	102349972	102349972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgatgctcccctacccCatcgtctcctctgacaggac	6	20	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102349972	A	A	102349972	1	1	127	0	1	0	0	0	0	0	0	0	12495	609	21	2		2	PPP2R5C	14	102349972	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	28690468	102349972	4999568	186	115317											
WDR20	91833	broad.mit.edu	37	chr14	102675231	102675231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcgtgcgtgagccaggacGggtttctgcgggtgttcaac	16	9	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102675231	T	T	102675231	3	4	127	1	0	0	0	0	1	0	0	0	17407	1116	39	1	751	1	WDR20	14	102675231	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	325259	102675231	4674309	187	115318											
PACS2	23241	broad.mit.edu	37	chr14	105860986	105860986	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccccatctgcatcttcGgacactccaaggccaccttc	5	18	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105860986	T	T	105860986	4	4	127	1	0	0	0	0	0	1	0	0	11467	1117	39	1	2753	1	PACS2	14	105860986	Nonsense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	3185755	105860986	1488554	188	115319											
TMEM85	51234	broad.mit.edu	37	chr15	34517891	34517891	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accgtagcccatgggccagtCctgagttacacactcatcct	8	15	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34517891	T	T	34517891	1	4	127	0	1	0	0	0	0	0	0	0	16330	870	30	4		4	TMEM85	15	34517891	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08		34517891	68013501	189	115320											
IVD	3712	broad.mit.edu	37	chr15	40708484	40708484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaccccagcttcctccCgtaggactgtgcaggtgtga	12	13	0	2	rs115077254	by1000genomes	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40708484	A	A	40708484	1	1	127	0	1	0	0	0	0	0	0	0	7998	667	23	1		1	IVD	15	40708484	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	6190593	40708484	61822908	190	115321											
ZFYVE19	84936	broad.mit.edu	37	chr15	41105992	41105992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaccctggacgcaacccCgcggggcagagcctgaggtg	15	15	0	2	rs72735636	by1000genomes	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41105992	A	A	41105992	3	1	127	1	0	0	0	0	1	0	0	0	17791	652	23	1	1226	1	ZFYVE19	15	41105992	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	397508	41105992	61425400	191	115322											
VPS18	57617	broad.mit.edu	37	chr15	41188335	41188335	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaggtgtttggggactgtTaactcactgggcctttcttc	13	8	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41188335	A	A	41188335	1	1	127	0	1	0	0	0	0	0	0	0	17321	1769	61	5		5	VPS18	15	41188335	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	82343	41188335	61343057	192	115323											
VPS13C	54832	broad.mit.edu	37	chr15	62333557	62333557	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgactttaaaaggaacatcCaattcactcttcagaagaaa	5	8	3	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62333557	G	G	62333557	3	3	127	1	0	0	0	0	1	0	0	0	17318	593	21	4	11468	4	VPS13C	15	62333557	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	21145222	62333557	40197835	193	115324											
BLM	641	broad.mit.edu	37	chr15	91341410	91341410	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcagaaagtattctctttTtattcataggattataaaac	5	5	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91341410	G	G	91341410	1	3	127	0	1	0	0	0	0	0	0	0	1451	1856	64	5		5	BLM	15	91341410	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	29007853	91341410	11189982	194	115325											
BLM	641	broad.mit.edu	37	chr15	91341436	91341436	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataggattataaaacaagagAtgtgactgacgatgtgaaaa	10	3	0	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91341436	G	G	91341436	3	3	127	1	0	0	0	0	1	0	0	0	1451	333	12	5	3289	5	BLM	15	91341436	Missense_Mutation	SNP	A	TCGA-44-6775-01A-11D-1855-08	26	91341436	11189956	195	115326											
XYLT1	64131	broad.mit.edu	37	chr16	17294482	17294482	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgtactccacggagtcctCgtcccactgcacgttcttgt	8	15	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17294482	T	T	17294482	3	4	127	1	0	0	0	0	1	0	0	0	17590	893	31	4	1972	4	XYLT1	16	17294482	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08		17294482	73060271	196	115327											
MVP	9961	broad.mit.edu	37	chr16	29856130	29856130	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtggatcagaggaccCgggacgccctgcaacgcagc	14	14	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29856130	T	T	29856130	3	4	127	1	0	0	0	0	1	0	0	0	10090	643	23	4	1989	4	MVP	16	29856130	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	12561648	29856130	60498623	197	115328											
CDH8	1006	broad.mit.edu	37	chr16	61747952	61747952	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacattctttttgtggtctGatactttggctcagagactc	9	8	3	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61747952	A	A	61747952	1	1	127	0	1	0	0	0	0	0	0	0	3146	1305	45	4		4	CDH8	16	61747952	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	31891822	61747952	28606801	198	115329											
NQO1	1728	broad.mit.edu	37	chr16	69748917	69748917	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagtgtaagcaaactctcCtatgaacactcgctcaaacc	6	12	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69748917	A	A	69748917	4	1	127	1	0	0	0	0	0	1	0	0	10706	690	24	2	469	2	NQO1	16	69748917	Nonsense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	8000965	69748917	20605836	199	115330											
PAFAH1B1	5048	broad.mit.edu	37	chr17	2568870	2568870	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtctacttggtactgaaCttgattttcactcctttttt	7	8	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2568870	G	G	2568870	1	3	127	0	1	0	0	0	0	0	0	0	11478	580	20	4		4	PAFAH1B1	17	2568870	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08		2568870	78626340	200	115331											
TP53	7157	broad.mit.edu	37	chr17	7578427	7578427	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcacaacctccgtcatgTgctgtgactgcttgtagatg	10	12	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578427	A	A	7578427	3	1	127	1	0	0	0	0	1	0	0	0	16505	1696	59	5	795	5	TP53	17	7578427	Missense_Mutation	SNP	T	TCGA-44-6775-01A-11D-1855-08	5009557	7578427	73616783	201	115332											
DNAH2	146754	broad.mit.edu	37	chr17	7680721	7680721	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttgatcaggctttggcgGcattgctctgtctgctctct	13	10	4	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7680721	A	A	7680721	1	1	127	0	1	0	0	0	0	0	0	0	4642	1218	42	4		4	DNAH2	17	7680721	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	102294	7680721	73514489	202	115333											
ALOXE3	59344	broad.mit.edu	37	chr17	8006764	8006764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttggtctggggtgggggCtgcctcatggatgatggagc	18	9	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8006764	A	A	8006764	3	1	127	1	0	0	0	0	1	0	0	0	542	796	28	3	310	3	ALOXE3	17	8006764	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	326043	8006764	73188446	203	115334											
C17orf68	80169	broad.mit.edu	37	chr17	8138437	8138437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcctaactgacgttccCacaccagctgctcgtacagg	9	14	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8138437	A	A	8138437	3	1	127	1	0	0	0	0	1	0	0	0	1892	595	21	2	2344	2	C17orf68	17	8138437	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	131673	8138437	73056773	204	115335											
NF1	4763	broad.mit.edu	37	chr17	29490291	29490291	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttcttcacacctgtcgtGaaggaaaccagcatgcagct	8	11	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29490291	T	T	29490291	4	4	127	1	0	0	0	0	0	1	0	0	10451	1291	45	3	390	3	NF1	17	29490291	Nonsense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	21351854	29490291	51704919	205	115336											
KRTAP3-2	83897	broad.mit.edu	37	chr17	39155965	39155965	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggggacagttgtcacaGcagatgggctccagtaacca	15	9	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39155965	A	A	39155965	2	1	127	1	0	0	0	0	0	0	0	1	8618	963	34	4		4	KRTAP3-2	17	39155965	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	9665674	39155965	42039245	206	115337											
CNTD1	124817	broad.mit.edu	37	chr17	40951285	40951285	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggccggggtgctgggttcTtgggagactggggcttgtgt	21	6	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40951285	C	C	40951285	1	2	127	0	1	0	0	0	0	0	0	0	3667	1624	56	5		5	CNTD1	17	40951285	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	1795320	40951285	40243925	207	115338											
C17orf65	339201	broad.mit.edu	37	chr17	42255127	42255127	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgagatggggaggagggaCgagccacaggcctattcctt	16	10	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42255127	G	G	42255127	1	3	127	0	1	0	0	0	0	0	0	0	1889	551	19	4		4	C17orf65	17	42255127	5'UTR	SNP	C	TCGA-44-6775-01A-11D-1855-08	1303842	42255127	38940083	208	115339											
TMEM49	81671	broad.mit.edu	37	chr17	57888874	57888874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagacacattaggatgtttgCctaacctccttttgaacaat	6	9	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57888874	T	T	57888874	1	4	127	0	1	0	0	0	0	0	0	0	16296	754	26	4		4	TMEM49	17	57888874	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	15633747	57888874	23306336	209	115340											
BRIP1	83990	broad.mit.edu	37	chr17	59761337	59761337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactattctctgatgaccCgagctcaggtgttgccttcg	11	12	2	2	rs147119272		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59761337	A	A	59761337	3	1	127	1	0	0	0	0	1	0	0	0	1523	652	23	1	683	1	BRIP1	17	59761337	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	1872463	59761337	21433873	210	115341											
PRKCA	5578	broad.mit.edu	37	chr17	64731743	64731743	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctgcttgacaaaccccCgttcttgacgcagctgcact	9	16	1	2	rs145121663		TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64731743	A	A	64731743	3	1	127	1	0	0	0	0	1	0	0	0	12613	652	23	1	1231	1	PRKCA	17	64731743	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	4970406	64731743	16463467	211	115342											
SEC14L1	6397	broad.mit.edu	37	chr17	75196606	75196606	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcggttcctccgtgcacGggattttaatattgacaaag	9	9	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75196606	T	T	75196606	3	4	127	1	0	0	0	0	1	0	0	0	14094	1116	39	1	886	1	SEC14L1	17	75196606	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	10464863	75196606	5998604	212	115343											
SIRT7	51547	broad.mit.edu	37	chr17	79872027	79872027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcatgcaccagaggcgtGggtacttctttagaacctgt	12	9	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79872027	T	T	79872027	3	4	127	1	0	0	0	0	1	0	0	0	14456	1348	47	2	381	2	SIRT7	17	79872027	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	4675421	79872027	1323183	213	115344											
MIB1	57534	broad.mit.edu	37	chr18	19438633	19438633	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgatttcatgtaaacagtGatgctgtgaatggcactgaa	10	5	1	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19438633	A	A	19438633	1	1	127	0	1	0	0	0	0	0	0	0	9659	1305	45	4		4	MIB1	18	19438633	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08		19438633	58638615	214	115345											
MOCOS	55034	broad.mit.edu	37	chr18	33775220	33775220	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tattttgtgttttctttcagGaactgtctatcttgaccatg	7	7	4	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33775220	A	A	33775220	3	1	127	1	0	0	0	0	1	0	0	0	9783	1188	41	4	149	4	MOCOS	18	33775220	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	14336587	33775220	44302028	215	115346											
ARHGEF18	23370	broad.mit.edu	37	chr19	7521145	7521145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggaagtggcatccgcGggggtggccagcaagacctc	16	12	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7521145	T	T	7521145	1	4	127	0	1	0	0	0	0	0	0	0	903	1131	39	1		1	ARHGEF18	19	7521145	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08		7521145	51607838	216	115347											
MUC16	94025	broad.mit.edu	37	chr19	9089879	9089879	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacacggagactgggacacCgttcgtggccagagtcaaat	13	10	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9089879	T	T	9089879	3	4	127	1	0	0	0	0	1	0	0	0	10067	652	23	4	41923	4	MUC16	19	9089879	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	1568734	9089879	50039104	217	115348											
ICAM1	3383	broad.mit.edu	37	chr19	10395637	10395637	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcactcgagatcttgagggCacctacctctgtcgggccag	12	13	3	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10395637	G	G	10395637	2	3	127	1	0	0	0	0	0	0	0	1	7549	697	25	4		4	ICAM1	19	10395637	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	1305758	10395637	48733346	218	115349											
FBXW9	84261	broad.mit.edu	37	chr19	12807331	12807331	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgcgtctgggtctgtctctGactctgggtccgagtcatcg	14	12	5	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12807331	A	A	12807331	3	1	127	1	0	0	0	0	1	0	0	0	5828	1294	45	4	1351	4	FBXW9	19	12807331	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	2411694	12807331	46321652	219	115350											
MAST1	22983	broad.mit.edu	37	chr19	12981866	12981866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagtggcaacaaggtagCagtgaccacaacgcccttcg	11	13	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12981866	A	A	12981866	3	1	127	1	0	0	0	0	1	0	0	0	9416	710	25	3	3237	3	MAST1	19	12981866	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	174535	12981866	46147117	220	115351											
EMR3	84658	broad.mit.edu	37	chr19	14757904	14757904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacgaccctgaacagagtGggtctagaaccacagcctgg	11	12	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14757904	T	T	14757904	1	4	127	0	1	0	0	0	0	0	0	0	5148	1363	47	2		2	EMR3	19	14757904	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	1776038	14757904	44371079	221	115352											
MYO9B	4650	broad.mit.edu	37	chr19	17213241	17213241	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccagtgcatcgtgatctcGggtgagagcggctccggcaa	14	11	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17213241	A	A	17213241	2	1	127	1	0	0	0	0	0	0	0	1	10179	1103	39	4		4	MYO9B	19	17213241	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	2455337	17213241	41915742	222	115353											
PIK3R2	5296	broad.mit.edu	37	chr19	18266787	18266787	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccggcgacgtgctggtagTgagccgggcggccttgcagg	19	12	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18266787	C	C	18266787	3	2	127	1	0	0	0	0	1	0	0	0	12014	1696	59	5	100	5	PIK3R2	19	18266787	Missense_Mutation	SNP	T	TCGA-44-6775-01A-11D-1855-08	1053546	18266787	40862196	223	115354											
ZNF585B	92285	broad.mit.edu	37	chr19	37677613	37677613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctggatgaaggcctgccCgcattcaatacagatgtagg	11	9	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37677613	A	A	37677613	3	1	127	1	0	0	0	0	1	0	0	0	18145	652	23	1	1487	1	ZNF585B	19	37677613	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	19410826	37677613	21451370	224	115355											
SIPA1L3	23094	broad.mit.edu	37	chr19	38633181	38633181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtaccctcctactcaccCtctgcctccttcctcccctg	6	21	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38633181	A	A	38633181	1	1	127	0	1	0	0	0	0	0	0	0	14444	696	24	2		2	SIPA1L3	19	38633181	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	955568	38633181	20495802	225	115356											
LIN7B	64130	broad.mit.edu	37	chr19	49621342	49621342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaccccaggctcccaaacCaggccagtgcttcctggatc	8	16	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49621342	A	A	49621342	1	1	127	0	1	0	0	0	0	0	0	0	8884	609	21	2		2	LIN7B	19	49621342	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	10988161	49621342	9507641	226	115357											
VRK3	51231	broad.mit.edu	37	chr19	50491663	50491663	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgatgtcctcagtgttggGaaggcaatttgtccatggca	12	8	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50491663	A	A	50491663	3	1	127	1	0	0	0	0	1	0	0	0	17348	1174	41	4	253	4	VRK3	19	50491663	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	870321	50491663	8637320	227	115358											
CD33	945	broad.mit.edu	37	chr19	51728440	51728440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggggagaggggttgtcGggctgggccgagctgaccct	20	9	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51728440	T	T	51728440	1	4	127	0	1	0	0	0	0	0	0	0	3035	1131	39	1		1	CD33	19	51728440	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	1236777	51728440	7400543	228	115359											
PEG3	5178	broad.mit.edu	37	chr19	57325604	57325604	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcctccacttctggctcGgcagcctccacttctggctc	9	18	2	0	rs141987198	byFrequency	TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57325604	A	A	57325604	2	1	127	1	0	0	0	0	0	0	0	1	11814	1103	39	4		4	PEG3	19	57325604	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	5597164	57325604	1803379	229	115360											
ZNF671	79891	broad.mit.edu	37	chr19	58231614	58231614	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttactgatggttccctccCaatggctgctcccagagttc	8	14	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58231614	T	T	58231614	1	4	127	0	1	0	0	0	0	0	0	0	18205	609	21	4		4	ZNF671	19	58231614	3'UTR	SNP	C	TCGA-44-6775-01A-11D-1855-08	906010	58231614	897369	230	115361											
CDC25B	994	broad.mit.edu	37	chr20	3779092	3779092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccccagccctatggaccCccacatggcggagcagacgt	10	17	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3779092	A	A	3779092	3	1	127	1	0	0	0	0	1	0	0	0	3093	623	22	2	372	2	CDC25B	20	3779092	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08		3779092	59246428	231	115362											
MYT1	4661	broad.mit.edu	37	chr20	62854714	62854714	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccactctgctgacctcaagTatgtttgcgctccctgacct	7	16	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62854714	C	C	62854714	5	2	127	1	0	0	0	0	0	0	1	0	10200	1652	57	5	2584	5	MYT1	20	62854714	Splice_Site	SNP	T	TCGA-44-6775-01A-11D-1855-08	59075622	62854714	170806	232	115363											
KRTAP10-7	386675	broad.mit.edu	37	chr21	46021597	46021597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctttgccgccccgcatGctcccgcccagcctgctgtg	9	20	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46021597	T	T	46021597	3	4	127	1	0	0	0	0	1	0	0	0	8585	1319	46	3	1067	3	KRTAP10-7	21	46021597	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08		46021597	2108298	233	115364											
ITGB2	3689	broad.mit.edu	37	chr21	46314875	46314875	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcccagctgagtggtgcGggagactcacattgtaagca	15	9	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46314875	A	A	46314875	1	1	127	0	1	0	0	0	0	0	0	0	7964	1131	39	4		4	ITGB2	21	46314875	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	293278	46314875	1815020	234	115365											
SGSM3	27352	broad.mit.edu	37	chr22	40797720	40797720	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcctgctgtgctcccacGctgtggtatgaaggggaccc	13	14	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40797720	A	A	40797720	1	1	127	0	1	0	0	0	0	0	0	0	14337	1102	38	4		4	SGSM3	22	40797720	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08		40797720	10506846	235	115366											
SHROOM2	357	broad.mit.edu	37	chrX	9912670	9912670	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgttcccttgccatcccGtgcccaacagcaggagctca	9	17	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9912670	A	A	9912670	1	1	127	0	1	0	0	0	0	0	0	0	14407	1160	40	4		4	SHROOM2	23	9912670	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08		9912670	145357890	236	115367											
ATXN3L	92552	broad.mit.edu	37	chrX	13338054	13338054	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatgaaagatgaaatccatGttaattgtatccgtgagttt	8	5	1	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13338054	C	C	13338054	1	2	127	0	1	0	0	0	0	0	0	0	1218	1392	48	4		4	ATXN3L	23	13338054	5'UTR	SNP	G	TCGA-44-6775-01A-11D-1855-08	3425384	13338054	141932506	237	115368											
BEND2	139105	broad.mit.edu	37	chrX	18192069	18192069	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtagagagaatagtacaatGaaccccataaatgcatcact	7	8	1	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18192069	T	T	18192069	1	4	127	0	1	0	0	0	0	0	0	0	1403	1305	45	3		3	BEND2	23	18192069	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	4854015	18192069	137078491	238	115369											
BEND2	139105	broad.mit.edu	37	chrX	18209128	18209128	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcaaactcaccaaaatcGggagtgaggcaggcagatgc	11	9	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18209128	T	T	18209128	2	4	127	1	0	0	0	0	0	0	0	1	1403	1103	39	1		1	BEND2	23	18209128	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	17059	18209128	137061432	239	115370											
PHKA2	5256	broad.mit.edu	37	chrX	18942542	18942542	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgagtgtgggtctgccCgtcatcctccagcaggtgca	14	11	2	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18942542	A	A	18942542	2	1	127	1	0	0	0	0	0	0	0	1	11939	639	23	1		1	PHKA2	23	18942542	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	733414	18942542	136328018	240	115371											
KLHL4	56062	broad.mit.edu	37	chrX	86890732	86890732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaggggggcatgatgccCctgcttccaaccattgctcc	11	13	0	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86890732	T	T	86890732	3	4	127	1	0	0	0	0	1	0	0	0	8462	623	22	4	1916	4	KLHL4	23	86890732	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	67948190	86890732	68379828	241	115372											
BHLHB9	80823	broad.mit.edu	37	chrX	102005352	102005352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgtctgaaaatccaactGcagccagagacatgatcaat	7	9	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102005352	T	T	102005352	3	4	127	1	0	0	0	0	1	0	0	0	1426	1319	46	3	1431	3	BHLHB9	23	102005352	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	15114620	102005352	53265208	242	115373											
MORC4	79710	broad.mit.edu	37	chrX	106185200	106185200	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccctctggggtccggtaGgagacctgagccttctgcag	13	13	3	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106185200	T	T	106185200	2	4	127	1	0	0	0	0	0	0	0	1	9798	987	35	2		2	MORC4	23	106185200	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	4179848	106185200	49085360	243	115374											
RBM41	55285	broad.mit.edu	37	chrX	106310709	106310709	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacataaatcctagatccaaGattccaattcaagaaagacc	4	10	1	4			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106310709	A	A	106310709	1	1	127	0	1	0	0	0	0	0	0	0	13243	957	33	4		4	RBM41	23	106310709	3'UTR	SNP	G	TCGA-44-6775-01A-11D-1855-08	125509	106310709	48959851	244	115375											
COL4A6	1288	broad.mit.edu	37	chrX	107418313	107418313	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctatccatcccctgccCcagcacctcttggcccagga	6	20	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107418313	T	T	107418313	1	4	127	0	1	0	0	0	0	0	0	0	3727	638	22	4		4	COL4A6	23	107418313	Intron	SNP	C	TCGA-44-6775-01A-11D-1855-08	1107604	107418313	47852247	245	115376											
IRS4	8471	broad.mit.edu	37	chrX	107978482	107978482	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcctcccggctcgagcgGcaccaagcccaggtgcctcc	11	20	0	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107978482	A	A	107978482	3	1	127	1	0	0	0	0	1	0	0	0	7912	1203	42	4	2684	4	IRS4	23	107978482	Missense_Mutation	SNP	G	TCGA-44-6775-01A-11D-1855-08	560169	107978482	47292078	246	115377											
PAK3	5063	broad.mit.edu	37	chrX	110366528	110366528	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagtatcagtggccgggcAttgaaaatgggctagtttat	12	5	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110366528	C	C	110366528	1	2	127	0	1	0	0	0	0	0	0	0	11496	232	8	5		5	PAK3	23	110366528	Intron	SNP	A	TCGA-44-6775-01A-11D-1855-08	2388046	110366528	44904032	247	115378											
DCX	1641	broad.mit.edu	37	chrX	110574030	110574030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatagaatagggtttcatGgagacacagtggtgttcatg	13	4	2	3			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110574030	T	T	110574030	1	4	127	0	1	0	0	0	0	0	0	0	4351	1363	47	2		2	DCX	23	110574030	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	207502	110574030	44696530	248	115379											
HTR2C	3358	broad.mit.edu	37	chrX	114142018	114142018	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctacggtacaagctacaTatgtaggaaaattttcttct	6	8	2	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114142018	G	G	114142018	1	3	127	0	1	0	0	0	0	0	0	0	7513	1421	49	5		5	HTR2C	23	114142018	3'UTR	SNP	T	TCGA-44-6775-01A-11D-1855-08	3567988	114142018	41128542	249	115380											
WDR44	54521	broad.mit.edu	37	chrX	117577498	117577499	+	Intron	INS	-	T	T													cacacacacattttatttgcINSttttcctttctccccaaaat							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117577499	T	T	117577498	6	5	127	0	1	1	1	0	0	0	0	0	17423	812	28	0		0	WDR44	23	117577498	Intron	INS	-	TCGA-44-6775-01A-11D-1855-08	3435480	117577498	37693062	250	115381											
LAMP2	3920	broad.mit.edu	37	chrX	119576567	119576567	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatttcacaactgtctacaGataacagatacggttaatac	5	9	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119576567	T	T	119576567	1	4	127	0	1	0	0	0	0	0	0	0	8690	957	33	3		3	LAMP2	23	119576567	Intron	SNP	G	TCGA-44-6775-01A-11D-1855-08	1999069	119576567	35693993	251	115382											
BCORL1	63035	broad.mit.edu	37	chrX	129171500	129171500	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaactgcagtgcgcaggaCggcacgaggcaagagggctg	18	9	0	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129171500	T	T	129171500	2	4	127	1	0	0	0	0	0	0	0	1	1392	535	19	4		4	BCORL1	23	129171500	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	9594933	129171500	26099060	252	115383											
FAM122C	159091	broad.mit.edu	37	chrX	133948751	133948751	+	Intron	DEL	G	-	-													ctcaaaaaaaaaaaaaaaaaGaattttgtaatggattttat							TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133948751	-	-	133948751	6	5	127	0	1	1	0	1	0	0	0	0	5467	957	33	0		0	FAM122C	23	133948751	Intron	DEL	G	TCGA-44-6775-01A-11D-1855-08	4777251	133948751	21321809	253	115384											
SAGE1	55511	broad.mit.edu	37	chrX	134993792	134993792	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggaaaatgatcaaacccCtcctgatggcttcctgtcaa	8	11	2	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134993792	T	T	134993792	3	4	127	1	0	0	0	0	1	0	0	0	13920	681	24	4	2267	4	SAGE1	23	134993792	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	1045041	134993792	20276768	254	115385											
GABRQ	55879	broad.mit.edu	37	chrX	151819909	151819909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggccctcctcaccccaaaTatgtttgggtgggggcctga	13	12	1	1			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151819909	A	A	151819909	1	1	127	0	1	0	0	0	0	0	0	0	6235	1421	49	5		5	GABRQ	23	151819909	Intron	SNP	T	TCGA-44-6775-01A-11D-1855-08	16826117	151819909	3450651	255	115386											
PNMA3	29944	broad.mit.edu	37	chrX	152226180	152226180	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgaagttgtgtaaagcCtatcaggaggcaggagagaa	15	5	1	2			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152226180	T	T	152226180	2	4	127	1	0	0	0	0	0	0	0	1	12250	668	24	4		4	PNMA3	23	152226180	Silent	SNP	C	TCGA-44-6775-01A-11D-1855-08	406271	152226180	3044380	256	115387											
FLNA	2316	broad.mit.edu	37	chrX	153580740	153580740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtaggtgtggttctccCcttccacgatctcggcctca	10	14	3	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153580740	A	A	153580740	3	1	127	1	0	0	0	0	1	0	0	0	5991	623	22	2	1397	2	FLNA	23	153580740	Missense_Mutation	SNP	C	TCGA-44-6775-01A-11D-1855-08	1354560	153580740	1689820	257	115388											
VBP1	7411	broad.mit.edu	37	chrX	154456755	154456755	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaccgataaaatgtgtctGtggttgggggtaagtaaatg	13	5	1	0			TCGA-44-6775-01A-11D-1855-08	TCGA-44-6775-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154456755	A	A	154456755	2	1	127	1	0	0	0	0	0	0	0	1	17263	1364	48	4		4	VBP1	23	154456755	Silent	SNP	G	TCGA-44-6775-01A-11D-1855-08	876015	154456755	813805	258	115389											
TNFRSF18	8784	broad.mit.edu	37	chr1	1139804	1139804	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaaggtttgcagtggccttCgtggcccccggagaaggtcc	14	13	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1139804	T	T	1139804	3	4	128	1	0	0	0	0	1	0	0	0	16414	893	31	4	617	4	TNFRSF18	1	1139804	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08		1139804	248110817	1	115390											
KIAA1751	85452	broad.mit.edu	37	chr1	1919959	1919959	+	Frame_Shift_Del	DEL	C	-	-													gccccagctcacctcatcttCtcagtgaaaagctcttgctc							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1919959	-	-	1919959	7	5	128	1	0	1	0	1	0	0	0	0	8326	912	32	0	2060	0	KIAA1751	1	1919959	Frame_Shift_Del	DEL	C	TCGA-44-6776-01A-11D-1855-08	780155	1919959	247330662	2	115391											
AJAP1	55966	broad.mit.edu	37	chr1	4771900	4771900	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggagagagagggccccggGgcccagtccccctcctgggc	17	15	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4771900	C	C	4771900	1	2	128	0	1	0	0	0	0	0	0	0	438	1247	43	4		4	AJAP1	1	4771900	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2851941	4771900	244478721	3	115392											
TAS1R2	80834	broad.mit.edu	37	chr1	19168188	19168188	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagggcaggggcagggcagGggcagggcaggagtgctagg	24	7	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19168188	C	C	19168188	1	2	128	0	1	0	0	0	0	0	0	0	15682	1247	43	4		4	TAS1R2	1	19168188	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	14396288	19168188	230082433	4	115393											
EPHA8	2046	broad.mit.edu	37	chr1	22928027	22928027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggggggggacccctgccGgggaggctacaggtccagat	19	11	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22928027	T	T	22928027	1	4	128	0	1	0	0	0	0	0	0	0	5215	1131	39	1		1	EPHA8	1	22928027	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3759839	22928027	226322594	5	115394											
EPHB2	2048	broad.mit.edu	37	chr1	23111087	23111087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggctcctgcaaggagaCcttcaacctctattactatg	8	13	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23111087	A	A	23111087	3	1	128	1	0	0	0	0	1	0	0	0	5217	507	18	3	339	3	EPHB2	1	23111087	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	183060	23111087	226139534	6	115395											
NKAIN1	79570	broad.mit.edu	37	chr1	31656885	31656885	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggcaaaggggcctgggatActgagtgtgagggagaggga	22	4	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31656885	T	T	31656885	1	4	128	0	1	0	0	0	0	0	0	0	10530	406	14	5		5	NKAIN1	1	31656885	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	8545798	31656885	217593736	7	115396											
GRIK3	2899	broad.mit.edu	37	chr1	37319110	37319110	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatccctgaggggcagctgGactgtgtcttgccccttgcc	12	14	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37319110	T	T	37319110	1	4	128	0	1	0	0	0	0	0	0	0	6841	1189	41	3		3	GRIK3	1	37319110	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5662225	37319110	211931511	8	115397											
C8B	732	broad.mit.edu	37	chr1	57411544	57411544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagggtgtattcataaatgCccccaagcacagcctctgtg	10	12	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57411544	A	A	57411544	3	1	128	1	0	0	0	0	1	0	0	0	2442	739	26	3	744	3	C8B	1	57411544	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	20092434	57411544	191839077	9	115398											
IL12RB2	3595	broad.mit.edu	37	chr1	67795397	67795397	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatatcggcccagtaacagCaggctctggaatatggtaat	11	8	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67795397	T	T	67795397	2	4	128	1	0	0	0	0	0	0	0	1	7697	709	25	4		4	IL12RB2	1	67795397	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	10383853	67795397	181455224	10	115399											
C1orf173	127254	broad.mit.edu	37	chr1	75097536	75097536	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggcatcatgtaactgttaAtgtttggaagttgatatgaa	10	3	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75097536	C	C	75097536	3	2	128	1	0	0	0	0	1	0	0	0	2034	101	4	5	3944	5	C1orf173	1	75097536	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	7302139	75097536	174153085	11	115400											
PKN2	5586	broad.mit.edu	37	chr1	89270578	89270578	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaccaaaacttcaaagacAaaagaaaattttttcaaagc	4	7	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89270578	G	G	89270578	3	3	128	1	0	0	0	0	1	0	0	0	12075	130	5	5	1513	5	PKN2	1	89270578	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	14173042	89270578	159980043	12	115401											
GCLM	2730	broad.mit.edu	37	chr1	94362395	94362395	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgataggaaggaagacaCaaagaaaataaatgcttaca	10	5	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94362395	G	G	94362395	1	3	128	0	1	0	0	0	0	0	0	0	6358	493	17	4		4	GCLM	1	94362395	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5091817	94362395	154888226	13	115402											
COL11A1	1301	broad.mit.edu	37	chr1	103364517	103364517	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttagcacctttttcaccttGtcttccctctgcacctgcag	5	16	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103364517	A	A	103364517	4	1	128	1	0	0	0	0	0	1	0	0	3699	1386	48	4	1352	4	COL11A1	1	103364517	Nonsense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	9002122	103364517	145886104	14	115403											
COL11A1	1301	broad.mit.edu	37	chr1	103412357	103412357	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgaataaaaagtaataaCgtgtacagggtagcagcata	9	4	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103412357	A	A	103412357	1	1	128	0	1	0	0	0	0	0	0	0	3699	551	19	3		3	COL11A1	1	103412357	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	47840	103412357	145838264	15	115404											
NBPF10	100132406	broad.mit.edu	37	chr1	145457361	145457361	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcaaattttgccagcttTatagcccatcctcatgcaaa	6	11	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145457361	C	C	145457361	1	2	128	0	1	0	0	0	0	0	0	0	10287	1769	61	5		5	NBPF10	1	145457361	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	42045004	145457361	103793260	16	115405											
RPRD2	23248	broad.mit.edu	37	chr1	150337348	150337348	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgtatagagaacaaaaAacaccacagtactatcgtct	7	8	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150337348	G	G	150337348	3	3	128	1	0	0	0	0	1	0	0	0	13728	14	1	5	160	5	RPRD2	1	150337348	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	4879987	150337348	98913273	17	115406											
TARS2	80222	broad.mit.edu	37	chr1	150463279	150463279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggccttgggcatgctccAtttggatgaggaagctggag	17	7	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150463279	T	T	150463279	1	4	128	0	1	0	0	0	0	0	0	0	15679	232	8	5		5	TARS2	1	150463279	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	125931	150463279	98787342	18	115407											
HRNR	388697	broad.mit.edu	37	chr1	152188100	152188100	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagatccatgttgaccgtagCcagaggactgtcctgagcga	12	10	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152188100	G	G	152188100	3	3	128	1	0	0	0	0	1	0	0	0	7426	739	26	4	2551	4	HRNR	1	152188100	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1724821	152188100	97062521	19	115408											
S100A7	6278	broad.mit.edu	37	chr1	153430323	153430323	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcgctgctccatggctctGcttgtggtagtctgtggcta	15	10	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153430323	A	A	153430323	4	1	128	1	0	0	0	0	0	1	0	0	13894	1328	46	4	44	4	S100A7	1	153430323	Nonsense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1242223	153430323	95820298	20	115409											
LMNA	4000	broad.mit.edu	37	chr1	156104512	156104512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcatggagtagggctgGgcagggagccccgcccctgg	18	12	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156104512	T	T	156104512	1	4	128	0	1	0	0	0	0	0	0	0	8922	1247	43	2		2	LMNA	1	156104512	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2674189	156104512	93146109	21	115410											
C1orf66	51093	broad.mit.edu	37	chr1	156703953	156703953	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccacgcctgtggggatctGagtgttgccttgctgagaca	13	11	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156703953	T	T	156703953	2	4	128	1	0	0	0	0	0	0	0	1	2078	1277	45	3		3	C1orf66	1	156703953	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	599441	156703953	92546668	22	115411											
OR6N1	128372	broad.mit.edu	37	chr1	158736422	158736422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacaccctggagatggggGaagcccaagatgatgaattc	14	8	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158736422	T	T	158736422	3	4	128	1	0	0	0	0	1	0	0	0	11300	1165	41	3	890	3	OR6N1	1	158736422	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	2032469	158736422	90514199	23	115412											
MNDA	4332	broad.mit.edu	37	chr1	158813853	158813853	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcacatctgcagctgtgGatcatcccccactaccccag	7	18	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158813853	T	T	158813853	3	4	128	1	0	0	0	0	1	0	0	0	9770	1174	41	3	521	3	MNDA	1	158813853	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	77431	158813853	90436768	24	115413											
NCSTN	23385	broad.mit.edu	37	chr1	160326673	160326673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcagtcctcagcaattGggtgttgaaaagcctgggtg	14	7	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160326673	T	T	160326673	1	4	128	0	1	0	0	0	0	0	0	0	10336	1363	47	2		2	NCSTN	1	160326673	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1512820	160326673	88923948	25	115414											
NDUFS2	4720	broad.mit.edu	37	chr1	161180318	161180318	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaacaagggaggctaaggAagaaggagcctccttactta	11	8	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161180318	G	G	161180318	1	3	128	0	1	0	0	0	0	0	0	0	10387	261	9	5		5	NDUFS2	1	161180318	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	853645	161180318	88070303	26	115415											
OLFML2B	25903	broad.mit.edu	37	chr1	161976070	161976070	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtgatcagaggcccttGgaggctggggctatacctct	14	10	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161976070	A	A	161976070	1	1	128	0	1	0	0	0	0	0	0	0	10953	1363	47	4		4	OLFML2B	1	161976070	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	795752	161976070	87274551	27	115416											
SELP	6403	broad.mit.edu	37	chr1	169559339	169559339	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttatagtcttccatttttCcctagtgttctatttccttc	3	11	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169559339	T	T	169559339	1	4	128	0	1	0	0	0	0	0	0	0	14132	870	30	4		4	SELP	1	169559339	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	7583269	169559339	79691282	28	115417											
MYOC	4653	broad.mit.edu	37	chr1	171607974	171607974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcgtggtggctcatgcCtgtaatcccagcactttggg	13	12	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171607974	A	A	171607974	1	1	128	0	1	0	0	0	0	0	0	0	10180	696	24	2		2	MYOC	1	171607974	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2048635	171607974	77642647	29	115418											
ASTN1	460	broad.mit.edu	37	chr1	176863861	176863861	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actccatgcggactccagccGccatgtgcttggtgccggag	13	14	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176863861	A	A	176863861	3	1	128	1	0	0	0	0	1	0	0	0	1068	1087	38	4	1139	4	ASTN1	1	176863861	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	5255887	176863861	72386760	30	115419											
HHAT	55733	broad.mit.edu	37	chr1	210797062	210797062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtttcttgttttccatGtatgcggatgggatcataca	10	7	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210797062	T	T	210797062	1	4	128	0	1	0	0	0	0	0	0	0	7156	1392	48	3		3	HHAT	1	210797062	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	33933201	210797062	38453559	31	115420											
TATDN3	128387	broad.mit.edu	37	chr1	212976082	212976082	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccattattgagaattataagGatcggttgttggcaattgga	11	4	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212976082	A	A	212976082	3	1	128	1	0	0	0	0	1	0	0	0	15712	1174	41	4	316	4	TATDN3	1	212976082	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	2179020	212976082	36274539	32	115421											
CENPF	1063	broad.mit.edu	37	chr1	214825322	214825322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaaaaatcaatattctGggttattactatgctatata	4	6	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214825322	T	T	214825322	1	4	128	0	1	0	0	0	0	0	0	0	3261	1363	47	2		2	CENPF	1	214825322	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1849240	214825322	34425299	33	115422											
USH2A	7399	broad.mit.edu	37	chr1	216348557	216348557	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaaaacattttggagcttCgtgtctcctaaataaagcaa	7	7	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216348557	A	A	216348557	1	1	128	0	1	0	0	0	0	0	0	0	17162	899	31	3		3	USH2A	1	216348557	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1523235	216348557	32902064	34	115423											
BPNT1	10380	broad.mit.edu	37	chr1	220232077	220232077	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggggtctcacgatattgCccaggctggtctcaaactcc	11	12	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220232077	T	T	220232077	1	4	128	0	1	0	0	0	0	0	0	0	1503	754	26	4		4	BPNT1	1	220232077	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	3883520	220232077	29018544	35	115424											
HLX	3142	broad.mit.edu	37	chr1	221055720	221055720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggctccagcgcacagcGccctcgggcgggcagcagcg	15	16	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221055720	T	T	221055720	1	4	128	0	1	0	0	0	0	0	0	0	7283	1102	38	3		3	HLX	1	221055720	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	823643	221055720	28194901	36	115425											
ZNF678	339500	broad.mit.edu	37	chr1	227843491	227843491	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagagaatttatactggaGaggaacctgacaaatgtaaa	9	4	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227843491	T	T	227843491	4	4	128	1	0	0	0	0	0	1	0	0	18212	943	33	3	1719	3	ZNF678	1	227843491	Nonsense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	6787771	227843491	21407130	37	115426											
PRSS38	339501	broad.mit.edu	37	chr1	228004870	228004870	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtgggctgaccacacaGgaagctgcgggcattgtacc	14	12	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228004870	A	A	228004870	1	1	128	0	1	0	0	0	0	0	0	0	12733	1015	35	4		4	PRSS38	1	228004870	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	161379	228004870	21245751	38	115427											
HEATR1	55127	broad.mit.edu	37	chr1	236734657	236734657	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattaacgcttaccggaaaTattccagcaacagtgcccaa	6	12	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236734657	C	C	236734657	3	2	128	1	0	0	0	0	1	0	0	0	7094	1396	49	5	2564	5	HEATR1	1	236734657	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	8729787	236734657	12515964	39	115428											
ACTN2	88	broad.mit.edu	37	chr1	236900342	236900342	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgccaccctcctcgtcccctCtcatcacccacctcgttcca	3	24	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236900342	A	A	236900342	1	1	128	0	1	0	0	0	0	0	0	0	205	928	32	3		3	ACTN2	1	236900342	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	165685	236900342	12350279	40	115429											
RYR2	6262	broad.mit.edu	37	chr1	237753866	237753866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattctgaaaacgtgatgtGccttagtcatctttagaatc	9	7	3	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237753866	T	T	237753866	1	4	128	0	1	0	0	0	0	0	0	0	13880	1334	46	3		3	RYR2	1	237753866	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	853524	237753866	11496755	41	115430											
RYR2	6262	broad.mit.edu	37	chr1	237982323	237982323	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccaagaagtgataccatGtcttttttccagtgctatat	6	10	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237982323	A	A	237982323	1	1	128	0	1	0	0	0	0	0	0	0	13880	1392	48	4		4	RYR2	1	237982323	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	228457	237982323	11268298	42	115431											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242162358	242162358	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaaaaaaaactgtccCgcaaccgggaacctaactca	6	11	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242162358	G	G	242162358	1	3	128	0	1	0	0	0	0	0	0	0	9325	667	23	4		4	MAP1LC3C	1	242162358	5'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	4180035	242162358	7088263	43	115432											
OR2C3	81472	broad.mit.edu	37	chr1	247695027	247695027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggaggtgctcttggctgGctggagatacatgaagatga	16	5	1	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695027	T	T	247695027	3	4	128	1	0	0	0	0	1	0	0	0	11087	1203	42	3	179	3	OR2C3	1	247695027	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	5532669	247695027	1555594	44	115433											
OR2C3	81472	broad.mit.edu	37	chr1	247695038	247695038	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttggctggctggagatacAtgaagatgatgctcccgtaa	12	8	1	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695038	T	T	247695038	3	4	128	1	0	0	0	0	1	0	0	0	11087	217	8	5	190	5	OR2C3	1	247695038	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	11	247695038	1555583	45	115434											
C1orf150	148823	broad.mit.edu	37	chr1	247719802	247719802	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcagagtttttttgtttTgttttgttttgttttttcat	6	3	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247719802	C	C	247719802	1	2	128	0	1	0	0	0	0	0	0	0	2024	1827	63	5		5	C1orf150	1	247719802	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	24764	247719802	1530819	46	115435											
OR2L13	284521	broad.mit.edu	37	chr1	248247581	248247581	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaggaagcactctccaccaCccagtgtggggaggaagaag	14	10	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248247581	G	G	248247581	1	3	128	0	1	0	0	0	0	0	0	0	11100	522	18	4		4	OR2L13	1	248247581	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	527779	248247581	1003040	47	115436											
ROCK2	9475	broad.mit.edu	37	chr2	11448269	11448270	+	Intron	DNP	GA	TT	TT													caagtatcagatattagcaaGacatctacaaaaagaggccc							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	11448270	TT	TT	11448269	1	4	128	0	1	0	0	0	0	0	0	0	13629	957	33	3		3	ROCK2	2	11448269	Intron	DNP	GA	TCGA-44-6776-01A-11D-1855-08		11448269	231751104	48	115437											
OTOF	9381	broad.mit.edu	37	chr2	26703817	26703817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatgctcatccagcagcGtgtagttacgtgtggagccg	13	11	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26703817	T	T	26703817	3	4	128	1	0	0	0	0	1	0	0	0	11397	1145	40	3	4810	3	OTOF	2	26703817	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	15255548	26703817	216495556	49	115438											
CAD	790	broad.mit.edu	37	chr2	27459689	27459689	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacctcccaaaagcttgtgCgactgccgggtaagtctttg	11	11	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27459689	T	T	27459689	4	4	128	1	0	0	0	0	0	1	0	0	2591	760	27	4	4493	4	CAD	2	27459689	Nonsense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	755872	27459689	215739684	50	115439											
ALK	238	broad.mit.edu	37	chr2	29455189	29455189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcggctccggaattgccGtttagccctagaaccgagga	12	13	0	1	rs150557024	byFrequency;by1000genomes	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29455189	T	T	29455189	3	4	128	1	0	0	0	0	1	0	0	0	525	1136	40	3	2309	3	ALK	2	29455189	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1995500	29455189	213744184	51	115440											
NLRC4	58484	broad.mit.edu	37	chr2	32476218	32476218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagaaccctctgccgcaGcttcagcagcatggccatga	10	13	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32476218	T	T	32476218	3	4	128	1	0	0	0	0	1	0	0	0	10564	962	34	3	2383	3	NLRC4	2	32476218	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	3021029	32476218	210723155	52	115441											
VIT	5212	broad.mit.edu	37	chr2	37035875	37035875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacggacacgcgcatcggGgccgtgcagtacacctacga	13	14	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37035875	T	T	37035875	2	4	128	1	0	0	0	0	0	0	0	1	17298	1219	43	2		2	VIT	2	37035875	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	4559657	37035875	206163498	53	115442											
HEATR5B	54497	broad.mit.edu	37	chr2	37302722	37302722	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaggaagctgctgcaccaCccagtccacttagaactttc	10	13	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37302722	T	T	37302722	3	4	128	1	0	0	0	0	1	0	0	0	7099	507	18	4	5840	4	HEATR5B	2	37302722	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	266847	37302722	205896651	54	115443											
SLC8A1	6546	broad.mit.edu	37	chr2	40388007	40388007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtttgtccacagtactctAgaaatgttgaaaagaaaaat	8	5	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40388007	G	G	40388007	1	3	128	0	1	0	0	0	0	0	0	0	14820	435	15	5		5	SLC8A1	2	40388007	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	3085285	40388007	202811366	55	115444											
MSH2	4436	broad.mit.edu	37	chr2	47630474	47630474	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctatacggcgcacggcgaGgacgcgctgctggccgcccg	15	15	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47630474	A	A	47630474	2	1	128	1	0	0	0	0	0	0	0	1	9964	991	35	4		4	MSH2	2	47630474	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	7242467	47630474	195568899	56	115445											
KLRAQ1	129285	broad.mit.edu	37	chr2	48686770	48686770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagataatgcctgtgtgGgtttaacatagtcagcatat	10	5	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48686770	T	T	48686770	1	4	128	0	1	0	0	0	0	0	0	0	8484	1247	43	2		2	KLRAQ1	2	48686770	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1056296	48686770	194512603	57	115446											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48873794	48873794	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccgtgctacagcaaccCgcaattctaccttctgggcc	8	15	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48873794	A	A	48873794	2	1	128	1	0	0	0	0	0	0	0	1	15435	639	23	1		1	STON1-GTF2A1L	2	48873794	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	187024	48873794	194325579	58	115447											
C2orf86	51057	broad.mit.edu	37	chr2	63540452	63540452	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaacctctggtacctacaAggcagaaaaaaatattatgt	6	8	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63540452	C	C	63540452	1	2	128	0	1	0	0	0	0	0	0	0	2223	87	3	5		5	C2orf86	2	63540452	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	14666658	63540452	179658921	59	115448											
VPS54	51542	broad.mit.edu	37	chr2	64193151	64193151	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagtattttctttataccCattatctcttctaacatcat	1	9	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64193151	A	A	64193151	1	1	128	0	1	0	0	0	0	0	0	0	17343	609	21	2		2	VPS54	2	64193151	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	652699	64193151	179006222	60	115449											
MEIS1	4211	broad.mit.edu	37	chr2	66796016	66796016	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccttgccttgtctgctatCtgtgcatctaagatattgca	8	10	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66796016	A	A	66796016	1	1	128	0	1	0	0	0	0	0	0	0	9560	928	32	3		3	MEIS1	2	66796016	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2602865	66796016	176403357	61	115450											
ANTXR1	84168	broad.mit.edu	37	chr2	69397269	69397280	+	Intron	DEL	CATTGCCATGGT	-	-													taagcccgacttgctggggcCattgccatggtaattatggc							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69397280	-	-	69397269	6	5	128	0	1	1	0	1	0	0	0	0	711	609	21	0		0	ANTXR1	2	69397269	Intron	DEL	CATTGCCATGGT	TCGA-44-6776-01A-11D-1855-08	2601253	69397269	173802104	62	115451											
ADD2	119	broad.mit.edu	37	chr2	70906010	70906010	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacacgaaggctgtgacCgtggctggaatctccacctc	10	13	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70906010	G	G	70906010	2	3	128	1	0	0	0	0	0	0	0	1	305	639	23	4		4	ADD2	2	70906010	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	1508741	70906010	172293363	63	115452											
CD207	50489	broad.mit.edu	37	chr2	71058782	71058782	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccactcccttcatgccctGgccatggccggggaaagtca	10	17	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71058782	A	A	71058782	1	1	128	0	1	0	0	0	0	0	0	0	3013	1363	47	4		4	CD207	2	71058782	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	152772	71058782	172140591	64	115453											
REG1B	5968	broad.mit.edu	37	chr2	79314096	79314096	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataattaagaaagaatcgcAgggcaaggaaaaggctggaa	13	4	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79314096	T	T	79314096	1	4	128	0	1	0	0	0	0	0	0	0	13319	203	7	5		5	REG1B	2	79314096	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	8255314	79314096	163885277	65	115454											
CTNNA2	1496	broad.mit.edu	37	chr2	80101445	80101446	+	Frame_Shift_Ins	INS	-	C	C													cacgggcatcggcgagctggINSctgcggctcttaatgagttt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80101446	C	C	80101445	7	5	128	1	0	1	1	0	0	0	0	0	4047	1203	42	0	847	0	CTNNA2	2	80101445	Frame_Shift_Ins	INS	-	TCGA-44-6776-01A-11D-1855-08	787349	80101445	163097928	66	115455											
POLR1A	25885	broad.mit.edu	37	chr2	86305001	86305001	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgggaattccaatttcgTtggtgttgatgtacatgtct	10	7	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86305001	A	A	86305001	3	1	128	1	0	0	0	0	1	0	0	0	12304	1725	60	5	3897	5	POLR1A	2	86305001	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	6203556	86305001	156894372	67	115456											
SLC9A4	389015	broad.mit.edu	37	chr2	103125492	103125492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacttcctctttccttccCcactctgccaagagtgactg	6	15	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103125492	A	A	103125492	1	1	128	0	1	0	0	0	0	0	0	0	14830	638	22	2		2	SLC9A4	2	103125492	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	16820491	103125492	140073881	68	115457											
FHL2	2274	broad.mit.edu	37	chr2	106002685	106002685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcttccgaaaggctacacGcagggtccacgcccctcaga	10	15	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106002685	T	T	106002685	1	4	128	0	1	0	0	0	0	0	0	0	5936	1102	38	3		3	FHL2	2	106002685	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2877193	106002685	137196688	69	115458											
PTPN4	5775	broad.mit.edu	37	chr2	120714600	120714600	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatttttttagatgatgccAcacgggtcattttaaaaggt	8	5	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120714600	T	T	120714600	3	4	128	1	0	0	0	0	1	0	0	0	12898	159	6	5	2162	5	PTPN4	2	120714600	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	14711915	120714600	122484773	70	115459											
UGGT1	56886	broad.mit.edu	37	chr2	128890558	128890558	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaaagtgctaggattacaGatgtgagccactcactgcag	10	10	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128890558	T	T	128890558	1	4	128	0	1	0	0	0	0	0	0	0	17067	957	33	3		3	UGGT1	2	128890558	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8175958	128890558	114308815	71	115460											
PLEKHB2	55041	broad.mit.edu	37	chr2	131948881	131948881	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaagtcactctattcataGggaaaggtgaaaaataaaaa	7	5	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131948881	A	A	131948881	1	1	128	0	1	0	0	0	0	0	0	0	12160	1015	35	4		4	PLEKHB2	2	131948881	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3058323	131948881	111250492	72	115461											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135809941	135809941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtcactatctaaattcGttcctcatgtcttcgccttg	5	13	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135809941	T	T	135809941	1	4	128	0	1	0	0	0	0	0	0	0	13043	1160	40	3		3	RAB3GAP1	2	135809941	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3861060	135809941	107389432	73	115462											
LRP1B	53353	broad.mit.edu	37	chr2	140992521	140992521	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttttcatcgatacatatCatgttaattcataaaaataa	2	7	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140992521	A	A	140992521	1	1	128	0	1	0	0	0	0	0	0	0	9042	841	29	3		3	LRP1B	2	140992521	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5182580	140992521	102206852	74	115463											
NEB	4703	broad.mit.edu	37	chr2	152382515	152382515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgacgtgaacagtgtccCgggtctctggtagtgttgtg	14	9	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152382515	A	A	152382515	3	1	128	1	0	0	0	0	1	0	0	0	10397	652	23	1	3591	1	NEB	2	152382515	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	11389994	152382515	90816858	75	115464											
NR4A2	4929	broad.mit.edu	37	chr2	157182172	157182172	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagctgagactgctcacaCggctatctctgcccatgtga	10	12	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157182172	A	A	157182172	1	1	128	0	1	0	0	0	0	0	0	0	10728	551	19	3		3	NR4A2	2	157182172	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	4799657	157182172	86017201	76	115465											
ACVR1C	130399	broad.mit.edu	37	chr2	158390390	158390390	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaaggggaaaatggaaaaGaaagctatgagagatttctt	11	2	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158390390	T	T	158390390	1	4	128	0	1	0	0	0	0	0	0	0	222	957	33	3		3	ACVR1C	2	158390390	3'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	1208218	158390390	84808983	77	115466											
FAP	2191	broad.mit.edu	37	chr2	163075857	163075857	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatccaaccaactcacAttaacatcaattatgaattt	1	9	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163075857	G	G	163075857	1	3	128	0	1	0	0	0	0	0	0	0	5730	232	8	5		5	FAP	2	163075857	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	4685467	163075857	80123516	78	115467											
XIRP2	129446	broad.mit.edu	37	chr2	168107287	168107287	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttatcacaatagaatctActgcccgacgaacagaaaac	5	11	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168107287	C	C	168107287	3	2	128	1	0	0	0	0	1	0	0	0	17557	391	14	5	9415	5	XIRP2	2	168107287	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	5031430	168107287	75092086	79	115468											
MYO3B	140469	broad.mit.edu	37	chr2	171260754	171260754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacaatccatttccctcCagatggaatatcagaatgaa	5	10	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171260754	A	A	171260754	1	1	128	0	1	0	0	0	0	0	0	0	10171	609	21	2		2	MYO3B	2	171260754	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	3153467	171260754	71938619	80	115469											
SLC25A12	8604	broad.mit.edu	37	chr2	172693926	172693926	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatttgcaacaaaactttTaatttctttcaaaaagcatg	4	6	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172693926	C	C	172693926	1	2	128	0	1	0	0	0	0	0	0	0	14588	1769	61	5		5	SLC25A12	2	172693926	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	1433172	172693926	70505447	81	115470											
TTN	7273	broad.mit.edu	37	chr2	179648491	179648491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatttcaacaggtgctgGtactcttgctgtttctgtta	10	7	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179648491	T	T	179648491	3	4	128	1	0	0	0	0	1	0	0	0	16861	1261	44	3	108575	3	TTN	2	179648491	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	6954565	179648491	63550882	82	115471											
DNAJC10	54431	broad.mit.edu	37	chr2	183605156	183605156	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gataagtagcaatgaatgttCgtaacatttcaggtcttaac	8	6	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183605156	G	G	183605156	1	3	128	0	1	0	0	0	0	0	0	0	4669	899	31	4		4	DNAJC10	2	183605156	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	3956665	183605156	59594217	83	115472											
SATB2	23314	broad.mit.edu	37	chr2	200137490	200137490	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgttatctatctagcaCtggaggtaagctatagtcat	9	6	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200137490	T	T	200137490	1	4	128	0	1	0	0	0	0	0	0	0	13966	580	20	4		4	SATB2	2	200137490	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	16532334	200137490	43061883	84	115473											
ADAM23	8745	broad.mit.edu	37	chr2	207406688	207406688	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtgcacatatatgcccatCcttgcatttctttttgcttt	5	11	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207406688	A	A	207406688	1	1	128	0	1	0	0	0	0	0	0	0	245	870	30	3		3	ADAM23	2	207406688	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	7269198	207406688	35792685	85	115474											
ABCA12	26154	broad.mit.edu	37	chr2	215821447	215821447	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcactgtagaatgcaggtAatttgaaaatcgcaatgata	8	5	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215821447	T	T	215821447	4	4	128	1	0	0	0	0	0	1	0	0	30	372	13	5	1662	5	ABCA12	2	215821447	Nonsense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	8414759	215821447	27377926	86	115475											
MARCH4	57574	broad.mit.edu	37	chr2	217142428	217142428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgaagccatacatccCgtagcagatctggaagagaa	10	10	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217142428	A	A	217142428	3	1	128	1	0	0	0	0	1	0	0	0	9395	652	23	1	408	1	MARCH4	2	217142428	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1320981	217142428	26056945	87	115476											
DIS3L2	129563	broad.mit.edu	37	chr2	233195495	233195495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcccatgcaggtaaggagGgcccagccccggcctcccct	13	18	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233195495	T	T	233195495	1	4	128	0	1	0	0	0	0	0	0	0	4577	1247	43	2		2	DIS3L2	2	233195495	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	16053067	233195495	10003878	88	115477											
CHRNG	1146	broad.mit.edu	37	chr2	233406238	233406238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactgctcccttatcttcCagtgaggccatttattgggg	10	10	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233406238	A	A	233406238	3	1	128	1	0	0	0	0	1	0	0	0	3427	608	21	2	523	2	CHRNG	2	233406238	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	210743	233406238	9793135	89	115478											
ESPNL	339768	broad.mit.edu	37	chr2	239025450	239025450	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagggcatcagggcagcctgCgccatggggcaggggagcgg	20	10	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239025450	T	T	239025450	1	4	128	0	1	0	0	0	0	0	0	0	5297	783	27	4		4	ESPNL	2	239025450	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5619212	239025450	4173923	90	115479											
CHL1	10752	broad.mit.edu	37	chr3	361385	361385	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttccaggttaactaaggtCtcagctgtaaaccaaaagtg	9	8	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	361385	G	G	361385	1	3	128	0	1	0	0	0	0	0	0	0	3380	928	32	4		4	CHL1	3	361385	5'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08		361385	197661045	91	115480											
CHL1	10752	broad.mit.edu	37	chr3	383542	383542	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaatgaaaaaggaagatGaagcacagtaagggacaatt	11	3	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	383542	T	T	383542	1	4	128	0	1	0	0	0	0	0	0	0	3380	1305	45	3		3	CHL1	3	383542	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	22157	383542	197638888	92	115481											
BHLHE40	8553	broad.mit.edu	37	chr3	5024990	5024991	+	Frame_Shift_Ins	INS	-	C	C													ttaagcaagagtccgaagaaINSccccccacaaaaaagaaccg							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5024991	C	C	5024990	7	5	128	1	0	1	1	0	0	0	0	0	1429	40	2	0	870	0	BHLHE40	3	5024990	Frame_Shift_Ins	INS	-	TCGA-44-6776-01A-11D-1855-08	4641448	5024990	192997440	93	115482											
PLXNB1	5364	broad.mit.edu	37	chr3	48463485	48463485	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcattgtgggcttgaggcTggggctgggatggggtcaga	21	5	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48463485	C	C	48463485	1	2	128	0	1	0	0	0	0	0	0	0	12218	1595	55	5		5	PLXNB1	3	48463485	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	43438495	48463485	149558945	94	115483											
TEX264	51368	broad.mit.edu	37	chr3	51737635	51737635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcaagccccctgagcccGggaggctgcattattcatga	13	12	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51737635	T	T	51737635	1	4	128	0	1	0	0	0	0	0	0	0	15905	1131	39	1		1	TEX264	3	51737635	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3274150	51737635	146284795	95	115484											
PBRM1	55193	broad.mit.edu	37	chr3	52643704	52643704	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtacaggcattattaaacAtcatgacaaagtcctcaacc	5	10	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52643704	T	T	52643704	3	4	128	1	0	0	0	0	1	0	0	0	11585	217	8	5	2768	5	PBRM1	3	52643704	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	906069	52643704	145378726	96	115485											
CNTN3	5067	broad.mit.edu	37	chr3	74414733	74414733	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacctctagcaccagggctGctccatttttcagccatcgg	8	14	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74414733	C	C	74414733	3	2	128	1	0	0	0	0	1	0	0	0	3674	1319	46	4	2079	4	CNTN3	3	74414733	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	21771029	74414733	123607697	97	115486											
NFKBIZ	64332	broad.mit.edu	37	chr3	101568463	101568463	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcggggtcctcgagcgcccaGcctgggagcatgattgtgga	16	11	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101568463	C	C	101568463	1	2	128	0	1	0	0	0	0	0	0	0	10478	986	34	4		4	NFKBIZ	3	101568463	5'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	27153730	101568463	96453967	98	115487											
MYH15	22989	broad.mit.edu	37	chr3	108117506	108117506	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggtatagaaaagattgattCtttctgttgcttccaggagc	11	6	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108117506	G	G	108117506	3	3	128	1	0	0	0	0	1	0	0	0	10128	913	32	4	697	4	MYH15	3	108117506	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	6549043	108117506	89904924	99	115488											
MORC1	27136	broad.mit.edu	37	chr3	108719563	108719563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcaatcaatggtacataCtaaactaccttcactcttca	5	11	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108719563	A	A	108719563	1	1	128	0	1	0	0	0	0	0	0	0	9795	580	20	3		3	MORC1	3	108719563	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	602057	108719563	89302867	100	115489											
PHLDB2	90102	broad.mit.edu	37	chr3	111672953	111672953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggaggaagtgagaacagGggtagggatgattagaggag	22	1	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111672953	T	T	111672953	1	4	128	0	1	0	0	0	0	0	0	0	11947	1247	43	2		2	PHLDB2	3	111672953	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2953390	111672953	86349477	101	115490											
WDR52	55779	broad.mit.edu	37	chr3	113114653	113114653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggagtattaatataacCaatcggcttataatcccttt	5	9	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113114653	A	A	113114653	3	1	128	1	0	0	0	0	1	0	0	0	17431	594	21	2	3829	2	WDR52	3	113114653	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1441700	113114653	84907777	102	115491											
LRRC58	116064	broad.mit.edu	37	chr3	120054769	120054769	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctggtgggatttctttaaTgaaatttcctccaagatata	7	6	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120054769	C	C	120054769	3	2	128	1	0	0	0	0	1	0	0	0	9101	1464	51	5	595	5	LRRC58	3	120054769	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	6940116	120054769	77967661	103	115492											
CPNE4	131034	broad.mit.edu	37	chr3	131300384	131300384	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttcctctcagatagccCtagcttcatactcctggaag	6	14	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131300384	A	A	131300384	1	1	128	0	1	0	0	0	0	0	0	0	3846	696	24	2		2	CPNE4	3	131300384	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	11245615	131300384	66722046	104	115493											
CLSTN2	64084	broad.mit.edu	37	chr3	140282157	140282157	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaggtgcccagaactgaggGagggaacccagcaatggaga	16	8	0	3	rs143848411	by1000genomes	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140282157	A	A	140282157	1	1	128	0	1	0	0	0	0	0	0	0	3594	1189	41	4		4	CLSTN2	3	140282157	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8981773	140282157	57740273	105	115494											
SIAH2	6478	broad.mit.edu	37	chr3	150460021	150460021	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcgaaaacaaggcagtcGctgttcatgatggccgcagc	13	10	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150460021	A	A	150460021	2	1	128	1	0	0	0	0	0	0	0	1	14413	1078	38	4		4	SIAH2	3	150460021	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	10177864	150460021	47562409	106	115495											
CCDC39	339829	broad.mit.edu	37	chr3	180334034	180334034	+	Intron	SNP	G	C	C													cacttagtgtacagctgtgaGagttaagcagattttttttt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180334034	C	C	180334034	1	2	128	0	1	0	0	0	0	0	0	0	2838	957	33	4		4	CCDC39	3	180334034	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	29874013	180334034	17688396	107	115496	503	2									
CCDC39	339829	broad.mit.edu	37	chr3	180334036	180334036	+	Intron	SNP	G	C	C													cttagtgtacagctgtgagaGttaagcagatttttttttaa							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180334036	C	C	180334036	1	2	128	0	1	0	0	0	0	0	0	0	2838	1044	36	4		4	CCDC39	3	180334036	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2	180334036	17688394	108	115497	503	2									
EIF2B5	8893	broad.mit.edu	37	chr3	183860960	183860960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctccctgttctcctcgGggtgatcccgggaaggtaga	13	14	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183860960	T	T	183860960	1	4	128	0	1	0	0	0	0	0	0	0	5044	1247	43	2		2	EIF2B5	3	183860960	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3526924	183860960	14161470	109	115498											
ZNF595	152687	broad.mit.edu	37	chr4	53451	53451	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccggcgggaaatggcgGcggcgggaccgagtctgcga	20	10	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53451	T	T	53451	1	4	128	0	1	0	0	0	0	0	0	0	18152	1218	42	3		3	ZNF595	4	53451	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08		53451	191100825	110	115499											
CRIPAK	285464	broad.mit.edu	37	chr4	1389175	1389175	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtggagtgcccgcctgctCacacgtgcccatgtggagtg	14	12	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1389175	T	T	1389175	2	4	128	1	0	0	0	0	0	0	0	1	3909	813	29	4		4	CRIPAK	4	1389175	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	1335724	1389175	189765101	111	115500											
WHSC1	7468	broad.mit.edu	37	chr4	1952804	1952804	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccttcatctctaggtctcGgacagcccgggagacgagcc	11	15	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1952804	T	T	1952804	2	4	128	1	0	0	0	0	0	0	0	1	17489	1103	39	1		1	WHSC1	4	1952804	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	563629	1952804	189201472	112	115501											
SLC2A9	56606	broad.mit.edu	37	chr4	9998467	9998467	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagtccaccgatggcgaaTatggacacagtcacagacca	9	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9998467	C	C	9998467	3	2	128	1	0	0	0	0	1	0	0	0	14666	1396	49	5	1314	5	SLC2A9	4	9998467	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	8045663	9998467	181155809	113	115502											
LAP3	51056	broad.mit.edu	37	chr4	17590484	17590484	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggcaatgggatcattcctCagtgtggccaaaggatctga	12	9	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17590484	T	T	17590484	2	4	128	1	0	0	0	0	0	0	0	1	8695	813	29	4		4	LAP3	4	17590484	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	7592017	17590484	173563792	114	115503											
DCAF16	54876	broad.mit.edu	37	chr4	17805113	17805113	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagagcaaatggtagatcTttacagtgatgcagttagga	11	5	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17805113	G	G	17805113	1	3	128	0	1	0	0	0	0	0	0	0	4301	1624	56	5		5	DCAF16	4	17805113	3'UTR	SNP	T	TCGA-44-6776-01A-11D-1855-08	214629	17805113	173349163	115	115504											
TBC1D1	23216	broad.mit.edu	37	chr4	38046205	38046205	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattccatcaatgttcatcaTaaaggtaaaagtataaaacc	4	7	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38046205	C	C	38046205	1	2	128	0	1	0	0	0	0	0	0	0	15716	1421	49	5		5	TBC1D1	4	38046205	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	20241092	38046205	153108071	116	115505											
UGDH	7358	broad.mit.edu	37	chr4	39505958	39505958	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaaaacaaaaaaacacAtacatgaacacatactcaac	1	10	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39505958	G	G	39505958	1	3	128	0	1	0	0	0	0	0	0	0	17066	232	8	5		5	UGDH	4	39505958	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	1459753	39505958	151648318	117	115506											
YIPF7	285525	broad.mit.edu	37	chr4	44638039	44638039	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattgtcctgcgtaaccCgatgacatgagcatctctga	8	10	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44638039	A	A	44638039	2	1	128	1	0	0	0	0	0	0	0	1	17610	639	23	1		1	YIPF7	4	44638039	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	5132081	44638039	146516237	118	115507											
GABRA2	2555	broad.mit.edu	37	chr4	46305705	46305705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatagaagggatcagagGtagaacaaaaactgattttt	11	3	1	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46305705	T	T	46305705	1	4	128	0	1	0	0	0	0	0	0	0	6221	1276	44	3		3	GABRA2	4	46305705	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1667666	46305705	144848571	119	115508											
GABRA2	2555	broad.mit.edu	37	chr4	46390489	46390489	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcactaagaacgagaagcaGtgaagtttttacagtctatt	8	6	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46390489	A	A	46390489	1	1	128	0	1	0	0	0	0	0	0	0	6221	1044	36	4		4	GABRA2	4	46390489	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	84784	46390489	144763787	120	115509											
CWH43	80157	broad.mit.edu	37	chr4	49005982	49005982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcccaggaggtgtctacGctagagaaagatcagatgtg	13	7	2	3	rs139364544		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49005982	T	T	49005982	3	4	128	1	0	0	0	0	1	0	0	0	4106	1087	38	3	1059	3	CWH43	4	49005982	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	2615493	49005982	142148294	121	115510											
KDR	3791	broad.mit.edu	37	chr4	55981449	55981449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagatgcaacttactGcacaaagtgacacgttgaga	12	7	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55981449	T	T	55981449	3	4	128	1	0	0	0	0	1	0	0	0	8209	1333	46	3	3690	3	KDR	4	55981449	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	6975467	55981449	135172827	122	115511											
POLR2B	5431	broad.mit.edu	37	chr4	57877298	57877298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttaagagggtgtggactGtgagatttttaaacaaggca	13	3	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57877298	T	T	57877298	1	4	128	0	1	0	0	0	0	0	0	0	12310	1392	48	3		3	POLR2B	4	57877298	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1895849	57877298	133276978	123	115512											
EPHA5	2044	broad.mit.edu	37	chr4	66467235	66467235	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagagaaaaataaaacttGagagaaataatctccataaa	5	4	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66467235	T	T	66467235	1	4	128	0	1	0	0	0	0	0	0	0	5212	1305	45	3		3	EPHA5	4	66467235	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8589937	66467235	124687041	124	115513											
NPFFR2	10886	broad.mit.edu	37	chr4	73012884	73012884	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagtccagtctactggtgCcgggaagactggccaaatca	11	12	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73012884	A	A	73012884	4	1	128	1	0	0	0	0	0	1	0	0	10673	747	26	3	944	3	NPFFR2	4	73012884	Nonsense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	6545649	73012884	118141392	125	115514											
CCDC158	339965	broad.mit.edu	37	chr4	77247224	77247224	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaattaaaaatagcaaacTgcacctctcaaaaagtcaag	4	8	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77247224	A	A	77247224	1	1	128	0	1	0	0	0	0	0	0	0	2817	1595	55	5		5	CCDC158	4	77247224	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	4234340	77247224	113907052	126	115515											
FRAS1	80144	broad.mit.edu	37	chr4	79432632	79432632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgcaaccttgaaatacctgGatgtcaaacataaggagcat	8	9	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79432632	T	T	79432632	3	4	128	1	0	0	0	0	1	0	0	0	6102	1174	41	3	10314	3	FRAS1	4	79432632	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	2185408	79432632	111721644	127	115516											
WDFY3	23001	broad.mit.edu	37	chr4	85715978	85715978	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagcaaataaactctaaatTatatataatctactagaaaa	2	5	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85715978	A	A	85715978	1	1	128	0	1	0	0	0	0	0	0	0	17397	1769	61	5		5	WDFY3	4	85715978	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	6283346	85715978	105438298	128	115517											
PTPN13	5783	broad.mit.edu	37	chr4	87622342	87622342	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaatagtggattacatttcCatttattttctaaaaattgt	4	5	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87622342	T	T	87622342	1	4	128	0	1	0	0	0	0	0	0	0	12888	609	21	4		4	PTPN13	4	87622342	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1906364	87622342	103531934	129	115518											
SNCA	6622	broad.mit.edu	37	chr4	90650499	90650499	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacttttaaaaatcagaacCatgttttggaaaaatcttac	4	7	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90650499	T	T	90650499	1	4	128	0	1	0	0	0	0	0	0	0	14954	609	21	4		4	SNCA	4	90650499	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	3028157	90650499	100503777	130	115519											
ANK2	287	broad.mit.edu	37	chr4	114176842	114176842	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtactttggaacctgaaAataatgaaaaaaaaaaagga	8	4	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114176842	G	G	114176842	1	3	128	0	1	0	0	0	0	0	0	0	621	29	1	5		5	ANK2	4	114176842	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	23526343	114176842	76977434	131	115520											
TNIP3	79931	broad.mit.edu	37	chr4	122078406	122078406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagctctgctacctgaggaGgtcgttcaaagacagctgca	11	11	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122078406	T	T	122078406	1	4	128	0	1	0	0	0	0	0	0	0	16439	1015	35	2		2	TNIP3	4	122078406	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	7901564	122078406	69075870	132	115521											
LARP1B	55132	broad.mit.edu	37	chr4	129076971	129076971	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgataaactggaagatgAgaaatcagggctgcagcgag	14	6	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129076971	G	G	129076971	1	3	128	0	1	0	0	0	0	0	0	0	8701	319	11	5		5	LARP1B	4	129076971	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	6998565	129076971	62077305	133	115522											
INPP4B	8821	broad.mit.edu	37	chr4	143324296	143324296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgagaatgcagaaagtGtgcctgagtctgtttttcaa	10	7	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143324296	T	T	143324296	1	4	128	0	1	0	0	0	0	0	0	0	7823	1392	48	3		3	INPP4B	4	143324296	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	14247325	143324296	47829980	134	115523											
USP38	84640	broad.mit.edu	37	chr4	144124648	144124648	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttagtacaattaacagaaTtgatacactgtatgatgtat	6	5	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144124648	C	C	144124648	2	2	128	1	0	0	0	0	0	0	0	1	17196	1490	52	5		5	USP38	4	144124648	Silent	SNP	T	TCGA-44-6776-01A-11D-1855-08	800352	144124648	47029628	135	115524											
DCHS2	54798	broad.mit.edu	37	chr4	155312272	155312272	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtaatttagcagaaggaaCagacttataaaagctgatac	8	5	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155312272	G	G	155312272	1	3	128	0	1	0	0	0	0	0	0	0	4321	493	17	4		4	DCHS2	4	155312272	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	11187624	155312272	35842004	136	115525											
RXFP1	59350	broad.mit.edu	37	chr4	159573154	159573154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccggaccttttcacatacCcctgtgaaatgtcactgatt	7	12	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159573154	A	A	159573154	3	1	128	1	0	0	0	0	1	0	0	0	13870	623	22	2	2291	2	RXFP1	4	159573154	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	4260882	159573154	31581122	137	115526											
DDX60	55601	broad.mit.edu	37	chr4	169190053	169190053	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagctgaaagagccaaaaagGgacatcggatcatgacaagg	12	7	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169190053	A	A	169190053	3	1	128	1	0	0	0	0	1	0	0	0	4411	1232	43	4	2476	4	DDX60	4	169190053	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	9616899	169190053	21964223	138	115527											
PALLD	23022	broad.mit.edu	37	chr4	169611777	169611777	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaaacacagccgtggcGgaaggccaggtggtggttct	15	10	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169611777	A	A	169611777	2	1	128	1	0	0	0	0	0	0	0	1	11501	1103	39	4		4	PALLD	4	169611777	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	421724	169611777	21542499	139	115528											
KLKB1	3818	broad.mit.edu	37	chr4	187177231	187177231	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaaccggatggggcttctcGaaggagaaaggtaagcatga	15	6	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187177231	T	T	187177231	2	4	128	1	0	0	0	0	0	0	0	1	8483	1045	37	3		3	KLKB1	4	187177231	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	17565454	187177231	3977045	140	115529											
FAT1	2195	broad.mit.edu	37	chr4	187628565	187628565	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccacgacatgtagaagaCgccacgcagccttctggggt	11	13	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187628565	T	T	187628565	3	4	128	1	0	0	0	0	1	0	0	0	5746	536	19	4	11453	4	FAT1	4	187628565	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	451334	187628565	3525711	141	115530											
C5orf49	134121	broad.mit.edu	37	chr5	7831887	7831887	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggggaaaggaggctcCagatgccaccttctcgctgt	14	10	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7831887	T	T	7831887	1	4	128	0	1	0	0	0	0	0	0	0	2330	609	21	4		4	C5orf49	5	7831887	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08		7831887	173083373	142	115531											
FBXL7	23194	broad.mit.edu	37	chr5	15928306	15928306	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagtgtgccgccgctggtaCaacctggcctgggacccgcg	15	15	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928306	A	A	15928306	4	1	128	1	0	0	0	0	0	1	0	0	5781	489	17	3	445	3	FBXL7	5	15928306	Nonsense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	8096419	15928306	164986954	143	115532											
UGT3A1	133688	broad.mit.edu	37	chr5	35957471	35957471	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacatggagccaaaggcCacaaggacaaaccctgcatc	8	13	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35957471	A	A	35957471	2	1	128	1	0	0	0	0	0	0	0	1	17089	581	21	2		2	UGT3A1	5	35957471	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	20029165	35957471	144957789	144	115533											
C5orf42	65250	broad.mit.edu	37	chr5	37209865	37209865	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggtttcaggagctgataaaGaaaaccaaaaaggttttctt	9	5	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37209865	C	C	37209865	1	2	128	0	1	0	0	0	0	0	0	0	2324	957	33	4		4	C5orf42	5	37209865	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1252394	37209865	143705395	145	115534											
HEATR7B2	133558	broad.mit.edu	37	chr5	41018002	41018002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagccgcctgacggatgGtgggcagggtatcacaggag	17	9	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41018002	T	T	41018002	3	4	128	1	0	0	0	0	1	0	0	0	7102	1261	44	3	1983	3	HEATR7B2	5	41018002	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	3808137	41018002	139897258	146	115535											
HEATR7B2	133558	broad.mit.edu	37	chr5	41033002	41033002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcaacctcatcagacCattgggtgccctgggtcata	10	13	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41033002	A	A	41033002	1	1	128	0	1	0	0	0	0	0	0	0	7102	609	21	2		2	HEATR7B2	5	41033002	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	15000	41033002	139882258	147	115536											
MAST4	375449	broad.mit.edu	37	chr5	66460901	66460901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgaagcttccccctcaaGggagaagccaggcctgaggg	13	13	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66460901	T	T	66460901	3	4	128	1	0	0	0	0	1	0	0	0	9419	1000	35	2	6138	2	MAST4	5	66460901	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	25427899	66460901	114454359	148	115537											
PIK3R1	5295	broad.mit.edu	37	chr5	67589621	67589621	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttcaagaaaaaagtcgaGaatatgatagattatatgaa	8	2	1	5			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67589621	T	T	67589621	4	4	128	1	0	0	0	0	0	1	0	0	12013	943	33	3	1552	3	PIK3R1	5	67589621	Nonsense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1128720	67589621	113325639	149	115538											
MAP1B	4131	broad.mit.edu	37	chr5	71490202	71490202	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacagtcccagggctccacCacaaatagtgactggatgaa	10	11	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71490202	T	T	71490202	2	4	128	1	0	0	0	0	0	0	0	1	9320	581	21	4		4	MAP1B	5	71490202	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	3900581	71490202	109425058	150	115539											
TMEM171	134285	broad.mit.edu	37	chr5	72419665	72419665	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacactggcgactcagagccCcggatgtgtgggttcctttc	13	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72419665	T	T	72419665	2	4	128	1	0	0	0	0	0	0	0	1	16211	610	22	4		4	TMEM171	5	72419665	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	929463	72419665	108495595	151	115540											
ACOT12	134526	broad.mit.edu	37	chr5	80640895	80640895	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagggcggtgggcaaagagGatcttgacccatcaggccct	15	11	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80640895	T	T	80640895	1	4	128	0	1	0	0	0	0	0	0	0	150	1189	41	3		3	ACOT12	5	80640895	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8221230	80640895	100274365	152	115541											
CETN3	1070	broad.mit.edu	37	chr5	89705317	89705317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccagagggtgagtgatcCgggcaggctgccctaggctc	16	12	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89705317	A	A	89705317	1	1	128	0	1	0	0	0	0	0	0	0	3306	667	23	1		1	CETN3	5	89705317	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	9064422	89705317	91209943	153	115542											
ALDH7A1	501	broad.mit.edu	37	chr5	125928449	125928449	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaattagggggacagaaaGggggaaataaagagaaatga	15	1	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125928449	A	A	125928449	1	1	128	0	1	0	0	0	0	0	0	0	504	1015	35	4		4	ALDH7A1	5	125928449	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	36223132	125928449	54986811	154	115543											
FBN2	2201	broad.mit.edu	37	chr5	127671645	127671645	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctaggctgatttgagaCatatgagtttcaggcctgct	10	8	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127671645	T	T	127671645	1	4	128	0	1	0	0	0	0	0	0	0	5760	493	17	4		4	FBN2	5	127671645	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1743196	127671645	53243615	155	115544											
H2AFY	9555	broad.mit.edu	37	chr5	134696094	134696094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccacgaggctgggagtggCccccgggatccccccagcct	13	18	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134696094	T	T	134696094	1	4	128	0	1	0	0	0	0	0	0	0	6994	754	26	4		4	H2AFY	5	134696094	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	7024449	134696094	46219166	156	115545											
PSD2	84249	broad.mit.edu	37	chr5	139218197	139218197	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaggccggcaccctctcCccctcctgtccccaggagca	10	19	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139218197	A	A	139218197	1	1	128	0	1	0	0	0	0	0	0	0	12753	638	22	2		2	PSD2	5	139218197	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	4522103	139218197	41697063	157	115546											
PCDHB2	56133	broad.mit.edu	37	chr5	140475340	140475340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatacacagtaaatattcaGgcgacagatggtgggggcct	12	8	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140475340	T	T	140475340	3	4	128	1	0	0	0	0	1	0	0	0	11636	991	35	2	968	2	PCDHB2	5	140475340	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1257143	140475340	40439920	158	115547											
PCDHB12	56124	broad.mit.edu	37	chr5	140589383	140589383	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaaaagtctggtgacattActttaacagcacctttggat	7	8	2	1	rs147813756		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140589383	T	T	140589383	3	4	128	1	0	0	0	0	1	0	0	0	11631	391	14	5	906	5	PCDHB12	5	140589383	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	114043	140589383	40325877	159	115548											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736276	140736276	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgcacctctgtcctcCtatgtctccatcaactccaa	6	16	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140736276	G	G	140736276	2	3	128	1	0	0	0	0	0	0	0	1	11650	668	24	4		4	PCDHGA4	5	140736276	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	146893	140736276	40178984	160	115549											
PPP2R2B	5521	broad.mit.edu	37	chr5	146070557	146070557	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgccaccagagagagactGgggtaggctgagtctctgcc	14	11	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146070557	A	A	146070557	1	1	128	0	1	0	0	0	0	0	0	0	12486	1363	47	4		4	PPP2R2B	5	146070557	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5334281	146070557	34844703	161	115550											
AFAP1L1	134265	broad.mit.edu	37	chr5	148680815	148680815	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcatggcctgggttccCacacctcagggcctctgtcc	11	15	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148680815	T	T	148680815	1	4	128	0	1	0	0	0	0	0	0	0	354	609	21	4		4	AFAP1L1	5	148680815	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2610258	148680815	32234445	162	115551											
DCTN4	51164	broad.mit.edu	37	chr5	150121678	150121678	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgaccctttacttacccGttgtgtgtgaggattttcag	9	8	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150121678	T	T	150121678	2	4	128	1	0	0	0	0	0	0	0	1	4342	1144	40	3		3	DCTN4	5	150121678	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	1440863	150121678	30793582	163	115552											
FAM71B	153745	broad.mit.edu	37	chr5	156592744	156592744	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagataaaaagtacggccagTggcgagtttcaggcgcagct	13	9	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156592744	C	C	156592744	3	2	128	1	0	0	0	0	1	0	0	0	5659	1696	59	5	1389	5	FAM71B	5	156592744	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	6471066	156592744	24322516	164	115553											
DOCK2	1794	broad.mit.edu	37	chr5	169129281	169129281	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgtaatccacactaactCttgtctctctctccctctgc	4	16	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169129281	A	A	169129281	1	1	128	0	1	0	0	0	0	0	0	0	4727	928	32	3		3	DOCK2	5	169129281	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	12536537	169129281	11785979	165	115554											
DOCK2	1794	broad.mit.edu	37	chr5	169423010	169423010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctccaaagagggtaagGgaattttagtctggcataag	11	7	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169423010	T	T	169423010	1	4	128	0	1	0	0	0	0	0	0	0	4727	1247	43	2		2	DOCK2	5	169423010	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	293729	169423010	11492250	166	115555											
GABRP	2568	broad.mit.edu	37	chr5	170222178	170222178	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttttctcacccactacccCcatccatttccataccctgc	3	19	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170222178	T	T	170222178	1	4	128	0	1	0	0	0	0	0	0	0	6234	638	22	4		4	GABRP	5	170222178	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	799168	170222178	10693082	167	115556											
NSD1	64324	broad.mit.edu	37	chr5	176709697	176709697	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagggtcttttcccatacCcattgggattgctggattgg	13	8	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176709697	T	T	176709697	1	4	128	0	1	0	0	0	0	0	0	0	10764	638	22	4		4	NSD1	5	176709697	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6487519	176709697	4205563	168	115557											
SYCP2L	221711	broad.mit.edu	37	chr6	10898397	10898397	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatgccattggtaattggCaggaatcttcaagttattta	9	6	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10898397	G	G	10898397	1	3	128	0	1	0	0	0	0	0	0	0	15552	725	25	4		4	SYCP2L	6	10898397	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08		10898397	160216670	169	115558											
JARID2	3720	broad.mit.edu	37	chr6	15452366	15452366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacctctctaaaaggaaGcctaagacagaagattttct	7	9	3	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15452366	T	T	15452366	3	4	128	1	0	0	0	0	1	0	0	0	8015	962	34	3	467	3	JARID2	6	15452366	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	4553969	15452366	155662701	170	115559											
CAP2	10486	broad.mit.edu	37	chr6	17556694	17556694	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgagagaccgaacccCctcacctgaatccccctcta	5	19	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17556694	T	T	17556694	1	4	128	0	1	0	0	0	0	0	0	0	2646	638	22	4		4	CAP2	6	17556694	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	2104328	17556694	153558373	171	115560											
RNF144B	255488	broad.mit.edu	37	chr6	18457369	18457369	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgggcagaccatcacattttCtttctttacactttagaagt	6	10	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18457369	T	T	18457369	1	4	128	0	1	0	0	0	0	0	0	0	13557	928	32	4		4	RNF144B	6	18457369	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	900675	18457369	152657698	172	115561											
FAM65B	9750	broad.mit.edu	37	chr6	24848310	24848310	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaccctggctgtacatggaCattctcctctgaagggctgc	11	12	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24848310	T	T	24848310	3	4	128	1	0	0	0	0	1	0	0	0	5651	478	17	4	2244	4	FAM65B	6	24848310	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	6390941	24848310	146266757	173	115562											
HLA-B	3106	broad.mit.edu	37	chr6	31324851	31324852	+	Intron	INS	-	C	C													agaggccatttccctcccgaINScccgcactcaccggcccagg					rs148300790	by1000genomes	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31324852	C	C	31324851	6	5	128	0	1	1	1	0	0	0	0	0	7263	290	10	0		0	HLA-B	6	31324851	Intron	INS	-	TCGA-44-6776-01A-11D-1855-08	6476541	31324851	139790216	174	115563											
WDR46	9277	broad.mit.edu	37	chr6	33255771	33255771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagagtagtttagtctgtaGggtccaaactgccgcagatt	12	8	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33255771	T	T	33255771	2	4	128	1	0	0	0	0	0	0	0	1	17426	987	35	2		2	WDR46	6	33255771	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	1930920	33255771	137859296	175	115564											
IBTK	25998	broad.mit.edu	37	chr6	82936912	82936912	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgacatttcaattaccaaGcatgtctgttcatctccatg	5	10	4	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82936912	T	T	82936912	4	4	128	1	0	0	0	0	0	1	0	0	7546	963	34	3	3510	3	IBTK	6	82936912	Nonsense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	49681141	82936912	88178155	176	115565											
CGA	1081	broad.mit.edu	37	chr6	87795485	87795485	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaaaacatttaagatttgtGataataacaagtactgcagt	7	4	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87795485	T	T	87795485	3	4	128	1	0	0	0	0	1	0	0	0	3325	1290	45	3	14	3	CGA	6	87795485	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	4858573	87795485	83319582	177	115566											
GRIK2	2898	broad.mit.edu	37	chr6	102074079	102074079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaattcccttgtaacaaaCggaaagtgttcagagtcaga	9	7	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102074079	A	A	102074079	1	1	128	0	1	0	0	0	0	0	0	0	6840	551	19	3		3	GRIK2	6	102074079	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	14278594	102074079	69040988	178	115567											
TNFAIP3	7128	broad.mit.edu	37	chr6	138197057	138197057	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaccacactgccaaagTtcaggtaacagagttcaatg	8	9	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138197057	A	A	138197057	1	1	128	0	1	0	0	0	0	0	0	0	16397	1740	60	5		5	TNFAIP3	6	138197057	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	36122978	138197057	32918010	179	115568											
KIAA1244	57221	broad.mit.edu	37	chr6	138531204	138531204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgacgtggccaagagtgtGcgtcactgggacaggaacac	14	9	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138531204	T	T	138531204	1	4	128	0	1	0	0	0	0	0	0	0	8287	1334	46	3		3	KIAA1244	6	138531204	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	334147	138531204	32583863	180	115569											
UTRN	7402	broad.mit.edu	37	chr6	144758660	144758660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcttccttttttttttttGcactgagtagctcacaaatt	5	8	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144758660	T	T	144758660	1	4	128	0	1	0	0	0	0	0	0	0	17230	1334	46	3		3	UTRN	6	144758660	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	6227456	144758660	26356407	181	115570											
STXBP5	134957	broad.mit.edu	37	chr6	147588364	147588364	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatataaagcagtttctctAaaaacttaattggtaatttt	4	5	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147588364	G	G	147588364	1	3	128	0	1	0	0	0	0	0	0	0	15474	377	13	5		5	STXBP5	6	147588364	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	2829704	147588364	23526703	182	115571											
SYNE1	23345	broad.mit.edu	37	chr6	152577926	152577926	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaacaaaggcagcttgtTgaagagcatatgcattatgt	11	6	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152577926	G	G	152577926	1	3	128	0	1	0	0	0	0	0	0	0	15564	1827	63	5		5	SYNE1	6	152577926	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	4989562	152577926	18537141	183	115572											
MAP3K4	4216	broad.mit.edu	37	chr6	161491814	161491814	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtccttctgaatgtcataCatgagtgtctgaagttaaga	10	6	3	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161491814	T	T	161491814	3	4	128	1	0	0	0	0	1	0	0	0	9344	478	17	4	1896	4	MAP3K4	6	161491814	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	8913888	161491814	9623253	184	115573											
PACRG	135138	broad.mit.edu	37	chr6	163735809	163735809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagactgtgtaggacttttcGggaaattgcagagaagtaac	12	5	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163735809	T	T	163735809	1	4	128	0	1	0	0	0	0	0	0	0	11464	1131	39	1		1	PACRG	6	163735809	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2243995	163735809	7379258	185	115574											
PDE10A	10846	broad.mit.edu	37	chr6	165806329	165806329	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactgaaaccagtagagaatCactatgttgtaggagaactc	10	7	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165806329	G	G	165806329	1	3	128	0	1	0	0	0	0	0	0	0	11724	841	29	4		4	PDE10A	6	165806329	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2070520	165806329	5308738	186	115575											
C6orf70	55780	broad.mit.edu	37	chr6	170156936	170156936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctaaactcatggagtatAttagtccgttttcatgctgc	7	9	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170156936	G	G	170156936	1	3	128	0	1	0	0	0	0	0	0	0	2394	464	16	5		5	C6orf70	6	170156936	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	4350607	170156936	958131	187	115576											
RAPGEF5	9771	broad.mit.edu	37	chr7	22197545	22197545	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcagtctttgtctcaaacCcagaataatgcagttattgt	7	8	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22197545	G	G	22197545	1	3	128	0	1	0	0	0	0	0	0	0	13155	638	22	4		4	RAPGEF5	7	22197545	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08		22197545	136941118	188	115577											
IGF2BP3	10643	broad.mit.edu	37	chr7	23509547	23509547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgggtggggccaggcccGggcccacctgaaagcgcctc	16	17	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509547	T	T	23509547	1	4	128	0	1	0	0	0	0	0	0	0	7645	1131	39	1		1	IGF2BP3	7	23509547	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1312002	23509547	135629116	189	115578											
STK31	56164	broad.mit.edu	37	chr7	23751823	23751823	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgatactgattaatttctAattttccttgtattgtgatt	6	4	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23751823	T	T	23751823	1	4	128	0	1	0	0	0	0	0	0	0	15414	377	13	5		5	STK31	7	23751823	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	242276	23751823	135386840	190	115579											
SNX10	29887	broad.mit.edu	37	chr7	26400636	26400636	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagatcctaggattcagaaGgaggacttctggcattctta	11	8	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26400636	T	T	26400636	3	4	128	1	0	0	0	0	1	0	0	0	14995	991	35	2	72	2	SNX10	7	26400636	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	2648813	26400636	132738027	191	115580											
HOXA3	3200	broad.mit.edu	37	chr7	27150309	27150309	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgacaggggtttgacaccCgtgagggcgcacattggcac	14	11	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27150309	A	A	27150309	1	1	128	0	1	0	0	0	0	0	0	0	7360	667	23	1		1	HOXA3	7	27150309	5'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	749673	27150309	131988354	192	115581											
PRR15	222171	broad.mit.edu	37	chr7	29605982	29605982	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctggcagctccggccccTggtggaaatcgctcaccaac	11	15	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29605982	C	C	29605982	3	2	128	1	0	0	0	0	1	0	0	0	12693	1580	55	5	39	5	PRR15	7	29605982	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	2455673	29605982	129532681	193	115582											
AMPH	273	broad.mit.edu	37	chr7	38502605	38502605	+	Frame_Shift_Del	DEL	G	-	-													gaccgaggccgtgctggtgcGggagacgcaggtgctaatgt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38502605	-	-	38502605	7	5	128	1	0	1	0	1	0	0	0	0	588	1103	39	0	1277	0	AMPH	7	38502605	Frame_Shift_Del	DEL	G	TCGA-44-6776-01A-11D-1855-08	8896623	38502605	120636058	194	115583											
POU6F2	11281	broad.mit.edu	37	chr7	39379533	39379533	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaccatctccaacccagcaGagctccagccccccgcagaa	6	20	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39379533	A	A	39379533	2	1	128	1	0	0	0	0	0	0	0	1	12381	933	33	4		4	POU6F2	7	39379533	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	876928	39379533	119759130	195	115584											
TBRG4	9238	broad.mit.edu	37	chr7	45139939	45139939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtcacttggccagctcCtcagccaccgctttgcgcat	8	16	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45139939	A	A	45139939	3	1	128	1	0	0	0	0	1	0	0	0	15771	680	24	2	18	2	TBRG4	7	45139939	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	5760406	45139939	113998724	196	115585											
ZNF479	90827	broad.mit.edu	37	chr7	57193647	57193647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagcacagctccccagaCcacattttaaggactggctg	8	13	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57193647	T	T	57193647	1	4	128	0	1	0	0	0	0	0	0	0	18060	522	18	4		4	ZNF479	7	57193647	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	12053708	57193647	101945016	197	115586											
ZNF716	441234	broad.mit.edu	37	chr7	57528793	57528793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcagataattcatactaGggagaagtcttacaaatgtg	8	6	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57528793	T	T	57528793	3	4	128	1	0	0	0	0	1	0	0	0	18247	1000	35	2	640	2	ZNF716	7	57528793	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	335146	57528793	101609870	198	115587											
ZNF107	51427	broad.mit.edu	37	chr7	64167704	64167704	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaagtctttaaccagttctCaactcttactagacataaga	4	10	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64167704	T	T	64167704	3	4	128	1	0	0	0	0	1	0	0	0	17841	838	29	4	1028	4	ZNF107	7	64167704	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	6638911	64167704	94970959	199	115588											
TYW1	55253	broad.mit.edu	37	chr7	66474559	66474559	+	Intron	DEL	G	-	-													ctttatttgatgttttttttGgtcctattagggattcgcaa					rs4717339	by1000genomes	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66474559	-	-	66474559	6	5	128	0	1	1	0	1	0	0	0	0	16944	1363	47	0		0	TYW1	7	66474559	Intron	DEL	G	TCGA-44-6776-01A-11D-1855-08	2306855	66474559	92664104	200	115589											
ZP3	7784	broad.mit.edu	37	chr7	76063014	76063014	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctagcaaaatgaccctAaagccacctgtttggctttt	6	12	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76063014	G	G	76063014	1	3	128	0	1	0	0	0	0	0	0	0	18346	377	13	5		5	ZP3	7	76063014	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	9588455	76063014	83075649	201	115590											
SEMA3D	223117	broad.mit.edu	37	chr7	84666213	84666213	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggatacatactgtaccagGccgtggataaggaattctcc	10	9	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84666213	C	C	84666213	3	2	128	1	0	0	0	0	1	0	0	0	14140	1203	42	4	1182	4	SEMA3D	7	84666213	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	8603199	84666213	74472450	202	115591											
DYNC1I1	1780	broad.mit.edu	37	chr7	95657604	95657604	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcgaaggactccagtgcagCggacacccttatcagctgct	10	13	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95657604	G	G	95657604	3	3	128	1	0	0	0	0	1	0	0	0	4882	759	27	4	1176	4	DYNC1I1	7	95657604	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	10991391	95657604	63481059	203	115592											
MUC17	140453	broad.mit.edu	37	chr7	100674617	100674617	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacagtgtgtgacggcttgaGatctggggccaggaattaca	14	7	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100674617	T	T	100674617	1	4	128	0	1	0	0	0	0	0	0	0	10068	957	33	3		3	MUC17	7	100674617	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5017013	100674617	58464046	204	115593											
SLC26A5	375611	broad.mit.edu	37	chr7	103038575	103038575	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctcacttttaacattcaGatttaaaaagaagatttacc	3	7	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103038575	T	T	103038575	1	4	128	0	1	0	0	0	0	0	0	0	14634	957	33	3		3	SLC26A5	7	103038575	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2363958	103038575	56100088	205	115594											
RELN	5649	broad.mit.edu	37	chr7	103322555	103322555	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagcatgggagatagcaaTtacttaccctgtaggctggc	11	10	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103322555	C	C	103322555	1	2	128	0	1	0	0	0	0	0	0	0	13328	1508	52	5		5	RELN	7	103322555	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	283980	103322555	55816108	206	115595											
RELN	5649	broad.mit.edu	37	chr7	103417122	103417122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactcttgtaatatgtttgGtgaaaatgtatgtttaaaac	7	4	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103417122	T	T	103417122	1	4	128	0	1	0	0	0	0	0	0	0	13328	1276	44	3		3	RELN	7	103417122	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	94567	103417122	55721541	207	115596											
LAMB1	3912	broad.mit.edu	37	chr7	107600230	107600230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcactggcactggcctccGttgggatcacacacggaact	12	14	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107600230	T	T	107600230	3	4	128	1	0	0	0	0	1	0	0	0	8682	1136	40	3	3060	3	LAMB1	7	107600230	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	4183108	107600230	51538433	208	115597											
LAMB4	22798	broad.mit.edu	37	chr7	107707065	107707065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggatgaagcaaagagaaGtatgctggagcggggatgag	18	4	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107707065	T	T	107707065	1	4	128	0	1	0	0	0	0	0	0	0	8685	1044	36	3		3	LAMB4	7	107707065	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	106835	107707065	51431598	209	115598											
LAMB4	22798	broad.mit.edu	37	chr7	107710341	107710341	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggccaagcttttgaaagAatgcaaaaagacttaacatt	7	6	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107710341	G	G	107710341	1	3	128	0	1	0	0	0	0	0	0	0	8685	261	9	5		5	LAMB4	7	107710341	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	3276	107710341	51428322	210	115599											
NRCAM	4897	broad.mit.edu	37	chr7	107866076	107866076	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagagaatatcagttacaatCaccataactcaccaccataa	4	11	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107866076	T	T	107866076	1	4	128	0	1	0	0	0	0	0	0	0	10739	841	29	4		4	NRCAM	7	107866076	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	155735	107866076	51272587	211	115600											
C7orf58	79974	broad.mit.edu	37	chr7	120907143	120907143	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcaaatatataaaacgaGcatttagtcttttatgccaa	4	7	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120907143	A	A	120907143	1	1	128	0	1	0	0	0	0	0	0	0	2430	986	34	4		4	C7orf58	7	120907143	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	13041067	120907143	38231520	212	115601											
BPGM	669	broad.mit.edu	37	chr7	134363847	134363847	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggagtgtgttatgggtgCtgaactctctctctttttcc	10	8	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134363847	T	T	134363847	1	4	128	0	1	0	0	0	0	0	0	0	1497	812	28	4		4	BPGM	7	134363847	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	13456704	134363847	24774816	213	115602											
ZC3HAV1L	92092	broad.mit.edu	37	chr7	138713295	138713295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatacaatacaatgttgcCtgttctaaactttcccaaga	4	10	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138713295	A	A	138713295	1	1	128	0	1	0	0	0	0	0	0	0	17702	696	24	2		2	ZC3HAV1L	7	138713295	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	4349448	138713295	20425368	214	115603											
EPHB6	2051	broad.mit.edu	37	chr7	142562228	142562228	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcctgcctggccctggtcGctgtcaggctcttctcctac	12	16	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142562228	A	A	142562228	3	1	128	1	0	0	0	0	1	0	0	0	5220	1087	38	4	680	4	EPHB6	7	142562228	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	3848933	142562228	16576435	215	115604											
ARHGEF5	7984	broad.mit.edu	37	chr7	144062360	144062360	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggagcaggagcactcgGggaggacatatgaactcagg	18	7	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144062360	T	T	144062360	2	4	128	1	0	0	0	0	0	0	0	1	911	1219	43	2		2	ARHGEF5	7	144062360	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	1500132	144062360	15076303	216	115605											
SSPO	23145	broad.mit.edu	37	chr7	149512183	149512183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtggcgggtccgaatgGgcgccaggcatggcaggagg	20	9	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149512183	T	T	149512183	1	4	128	0	1	0	0	0	0	0	0	0	15307	1247	43	2		2	SSPO	7	149512183	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5449823	149512183	9626480	217	115606											
KCNH2	3757	broad.mit.edu	37	chr7	150644119	150644119	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaggacagtggccatgTctgcactcagccgggtctcc	13	14	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150644119	C	C	150644119	3	2	128	1	0	0	0	0	1	0	0	0	8102	1667	58	5	311	5	KCNH2	7	150644119	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	1131936	150644119	8494544	218	115607											
DPP6	1804	broad.mit.edu	37	chr7	154587604	154587604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagacaggtaactactgCatgtccgggtccccactgtc	9	15	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154587604	A	A	154587604	1	1	128	0	1	0	0	0	0	0	0	0	4770	725	25	3		3	DPP6	7	154587604	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	3943485	154587604	4551059	219	115608											
MYOM2	9172	broad.mit.edu	37	chr8	2021510	2021510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcacaaggacgacgaGggcctgtacaccctgcgcat	11	15	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2021510	T	T	2021510	3	4	128	1	0	0	0	0	1	0	0	0	10186	991	35	2	1084	2	MYOM2	8	2021510	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08		2021510	144342512	220	115609											
MYOM2	9172	broad.mit.edu	37	chr8	2044147	2044147	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacggccactccatgacccTcggctggaaggtcccgaaat	11	14	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2044147	A	A	2044147	3	1	128	1	0	0	0	0	1	0	0	0	10186	1551	54	5	2252	5	MYOM2	8	2044147	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	22637	2044147	144319875	221	115610											
CSMD1	64478	broad.mit.edu	37	chr8	4851865	4851865	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcttacccttcgctgcaGtgaggagcctcgcgcacagc	11	16	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4851865	A	A	4851865	3	1	128	1	0	0	0	0	1	0	0	0	3978	1029	36	4	10713	4	CSMD1	8	4851865	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	2807718	4851865	141512157	222	115611											
SFTPC	6440	broad.mit.edu	37	chr8	22019917	22019917	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtttgttagaatccagGccacctcctccaagaagcct	9	12	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22019917	T	T	22019917	1	4	128	0	1	0	0	0	0	0	0	0	14305	1218	42	3		3	SFTPC	8	22019917	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	17168052	22019917	124344105	223	115612											
BMP1	649	broad.mit.edu	37	chr8	22037119	22037119	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctgaggaatgtctgagctCcagcagggtcgtgacttgtg	15	8	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22037119	T	T	22037119	1	4	128	0	1	0	0	0	0	0	0	0	1462	870	30	4		4	BMP1	8	22037119	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	17202	22037119	124326903	224	115613											
POLR3D	661	broad.mit.edu	37	chr8	22107690	22107690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggtgcaactcctcttgGgcaaggtgactctggacgtg	15	9	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22107690	T	T	22107690	3	4	128	1	0	0	0	0	1	0	0	0	12326	1232	43	2	1050	2	POLR3D	8	22107690	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	70571	22107690	124256332	225	115614											
PIWIL2	55124	broad.mit.edu	37	chr8	22210425	22210425	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctcactgactgtggtccGtagcctgagggctctgtgag	13	12	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22210425	A	A	22210425	1	1	128	0	1	0	0	0	0	0	0	0	12053	1160	40	4		4	PIWIL2	8	22210425	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	102735	22210425	124153597	226	115615											
SLC25A37	51312	broad.mit.edu	37	chr8	23425712	23425712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcagtgctcacctgggcGgagctggtagtacattttgc	14	9	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23425712	T	T	23425712	1	4	128	0	1	0	0	0	0	0	0	0	14615	1131	39	1		1	SLC25A37	8	23425712	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1215287	23425712	122938310	227	115616											
KCNU1	157855	broad.mit.edu	37	chr8	36703176	36703176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattgctgaaactccaaaGgacgtcagaaggtaatttta	8	6	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36703176	T	T	36703176	3	4	128	1	0	0	0	0	1	0	0	0	8163	991	35	2	1848	2	KCNU1	8	36703176	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	13277464	36703176	109660846	228	115617											
FGFR1	2260	broad.mit.edu	37	chr8	38292020	38292020	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagcttgtggattctcatcTggaaacgatcccatgtctct	9	10	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38292020	A	A	38292020	1	1	128	0	1	0	0	0	0	0	0	0	5920	1595	55	5		5	FGFR1	8	38292020	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	1588844	38292020	108072002	229	115618											
SGK196	84197	broad.mit.edu	37	chr8	42977285	42977285	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaggagcacaaagttgcActctcacagctcaccagcct	9	13	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42977285	G	G	42977285	2	3	128	1	0	0	0	0	0	0	0	1	14321	146	6	5		5	SGK196	8	42977285	Silent	SNP	A	TCGA-44-6776-01A-11D-1855-08	4685265	42977285	103386737	230	115619											
PRKDC	5591	broad.mit.edu	37	chr8	48767902	48767902	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcattaggaaattaagcaaTcgatttgctaacacttcatc	5	8	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48767902	C	C	48767902	2	2	128	1	0	0	0	0	0	0	0	1	12627	1422	50	5		5	PRKDC	8	48767902	Silent	SNP	T	TCGA-44-6776-01A-11D-1855-08	5790617	48767902	97596120	231	115620											
SNTG1	54212	broad.mit.edu	37	chr8	51664632	51664632	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagagcaaaatcaaattTttgtttcagaatccagatac	7	7	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51664632	A	A	51664632	3	1	128	1	0	0	0	0	1	0	0	0	14988	1838	64	5	1418	5	SNTG1	8	51664632	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	2896730	51664632	94699390	232	115621											
GDAP1	54332	broad.mit.edu	37	chr8	75275089	75275089	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaataggctgaactctgtAagagtttgtatctgctttac	8	6	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75275089	T	T	75275089	1	4	128	0	1	0	0	0	0	0	0	0	6370	377	13	5		5	GDAP1	8	75275089	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	23610457	75275089	71088933	233	115622											
CRISPLD1	83690	broad.mit.edu	37	chr8	75932314	75932314	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcttcacattgcccaaGgtaaaccagtgtacacatag	8	12	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75932314	T	T	75932314	3	4	128	1	0	0	0	0	1	0	0	0	3914	1014	35	2	1286	2	CRISPLD1	8	75932314	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	657225	75932314	70431708	234	115623											
POP1	10940	broad.mit.edu	37	chr8	99142345	99142345	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaactcacatctggcacgCcaagcggtttcatatggtca	9	11	4	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99142345	T	T	99142345	3	4	128	1	0	0	0	0	1	0	0	0	12346	739	26	4	640	4	POP1	8	99142345	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	23210031	99142345	47221677	235	115624											
RGS22	26166	broad.mit.edu	37	chr8	101065202	101065202	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtaacacagaatcttggtGccctgtttattggaaaaata	9	6	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101065202	A	A	101065202	3	1	128	1	0	0	0	0	1	0	0	0	13414	1319	46	4	2349	4	RGS22	8	101065202	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1922857	101065202	45298820	236	115625											
RIMS2	9699	broad.mit.edu	37	chr8	104930687	104930687	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagatataccgcgaataccTgatagcacacatgcacaact	7	11	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104930687	C	C	104930687	2	2	128	1	0	0	0	0	0	0	0	1	13479	1567	55	5		5	RIMS2	8	104930687	Silent	SNP	T	TCGA-44-6776-01A-11D-1855-08	3865485	104930687	41433335	237	115626											
RIMS2	9699	broad.mit.edu	37	chr8	105025815	105025815	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgatgccttcattaatgactGgaagatctgcccctccttca	7	13	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105025815	C	C	105025815	1	2	128	0	1	0	0	0	0	0	0	0	13479	1349	47	4		4	RIMS2	8	105025815	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	95128	105025815	41338207	238	115627											
KCNV1	27012	broad.mit.edu	37	chr8	110986332	110986332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtactcgttgtccacggGgttggcatcgtcgcaaagct	13	10	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110986332	T	T	110986332	3	4	128	1	0	0	0	0	1	0	0	0	8164	1232	43	2	1228	2	KCNV1	8	110986332	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	5960517	110986332	35377690	239	115628											
CSMD3	114788	broad.mit.edu	37	chr8	113350062	113350062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaatagatgtgatgctaCttgcagttgattataaatag	8	3	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113350062	A	A	113350062	1	1	128	0	1	0	0	0	0	0	0	0	3980	580	20	3		3	CSMD3	8	113350062	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2363730	113350062	33013960	240	115629											
CSMD3	114788	broad.mit.edu	37	chr8	113657234	113657234	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagcatattgtagtactgatCtgtttttgctcatgcaaaat	7	6	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113657234	A	A	113657234	1	1	128	0	1	0	0	0	0	0	0	0	3980	928	32	3		3	CSMD3	8	113657234	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	307172	113657234	32706788	241	115630											
CSMD3	114788	broad.mit.edu	37	chr8	114389117	114389117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggaagatgaagcttcctGgccgggaaaacaaaacagcc	11	10	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114389117	T	T	114389117	1	4	128	0	1	0	0	0	0	0	0	0	3980	1363	47	2		2	CSMD3	8	114389117	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	731883	114389117	31974905	242	115631											
COL14A1	7373	broad.mit.edu	37	chr8	121383262	121383262	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggtacaaggggcgtggTggattaagacatccactgct	15	7	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121383262	A	A	121383262	1	1	128	0	1	0	0	0	0	0	0	0	3703	1711	59	5		5	COL14A1	8	121383262	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	6994145	121383262	24980760	243	115632											
FER1L6	654463	broad.mit.edu	37	chr8	125094556	125094556	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatccaagccacattcccAaaagagtccctgctctccat	6	15	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125094556	T	T	125094556	2	4	128	1	0	0	0	0	0	0	0	1	5872	117	5	5		5	FER1L6	8	125094556	Silent	SNP	A	TCGA-44-6776-01A-11D-1855-08	3711294	125094556	21269466	244	115633											
FAM135B	51059	broad.mit.edu	37	chr8	139263221	139263221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcaggccaagcgttcgGctgctgaccatcggtgcccc	13	14	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139263221	T	T	139263221	3	4	128	1	0	0	0	0	1	0	0	0	5495	1194	42	3	3875	3	FAM135B	8	139263221	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	14168665	139263221	7100801	245	115634											
FLJ43860	389690	broad.mit.edu	37	chr8	142505489	142505490	+	Nonsense_Mutation	DNP	GG	TT	TT													gtttccatcaccagcttgggGgagccatgagccatgttctt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	142505490	TT	TT	142505489	4	4	128	1	0	0	0	0	0	1	0	0	5987	1219	43	2	3711	2	FLJ43860	8	142505489	Nonsense_Mutation	DNP	GG	TCGA-44-6776-01A-11D-1855-08	3242268	142505489	3858533	246	115635											
ARC	23237	broad.mit.edu	37	chr8	143695607	143695608	+	Missense_Mutation	DNP	CC	AA	AA													cggggtaggcgtggagcccgCcgctggtccggtggtccagc							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	143695608	AA	AA	143695607	3	1	128	1	0	0	0	0	1	0	0	0	843	739	26	3	1168	3	ARC	8	143695607	Missense_Mutation	DNP	CC	TCGA-44-6776-01A-11D-1855-08	1190118	143695607	2668415	247	115636											
SLURP1	57152	broad.mit.edu	37	chr8	143822670	143822670	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagcaggagcgggtcaccAcggggctctggttgaagggg	20	8	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143822670	G	G	143822670	3	3	128	1	0	0	0	0	1	0	0	0	14870	159	6	5	112	5	SLURP1	8	143822670	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	127063	143822670	2541352	248	115637											
CYP11B2	1585	broad.mit.edu	37	chr8	143996498	143996498	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagatgctgggctggacgtCcagggtcaggctcccccggg	17	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143996498	T	T	143996498	3	4	128	1	0	0	0	0	1	0	0	0	4179	855	30	4	980	4	CYP11B2	8	143996498	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	173828	143996498	2367524	249	115638											
CYP11B2	1585	broad.mit.edu	37	chr8	143998689	143998689	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccctcgtggccccacccTgcagtcccaatccaaagtgt	8	17	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143998689	C	C	143998689	1	2	128	0	1	0	0	0	0	0	0	0	4179	1595	55	5		5	CYP11B2	8	143998689	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	2191	143998689	2365333	250	115639											
ZFP41	286128	broad.mit.edu	37	chr8	144331922	144331922	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcccacgctgggagtgtGgagaggtgcgtgggaagcaa	18	8	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144331922	T	T	144331922	1	4	128	0	1	0	0	0	0	0	0	0	17775	1363	47	2		2	ZFP41	8	144331922	5'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	333233	144331922	2032100	251	115640											
IFNA6	3443	broad.mit.edu	37	chr9	21350395	21350396	+	Missense_Mutation	DNP	CC	AA	AA													atttctgctctgacaacctcCcaggcacaagggctgtactt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21350396	AA	AA	21350395	3	1	128	1	0	0	0	0	1	0	0	0	7611	624	22	2	79	2	IFNA6	9	21350395	Missense_Mutation	DNP	CC	TCGA-44-6776-01A-11D-1855-08		21350395	119863036	252	115641											
TEK	7010	broad.mit.edu	37	chr9	27212622	27212622	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagacaaaatggagtttaTaggcaatttccacagcacat	7	7	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27212622	C	C	27212622	1	2	128	0	1	0	0	0	0	0	0	0	15873	1421	49	5		5	TEK	9	27212622	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	5862227	27212622	114000809	253	115642											
AQP7	364	broad.mit.edu	37	chr9	33386847	33386847	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaggagacttcctcccGcccggtggccaggctgaggc	14	14	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33386847	A	A	33386847	1	1	128	0	1	0	0	0	0	0	0	0	833	1102	38	4		4	AQP7	9	33386847	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	6174225	33386847	107826584	254	115643											
FAM75A6	389730	broad.mit.edu	37	chr9	43627205	43627205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgaagatgggcctgagcCtcggcctgagccataggtgt	15	10	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627205	A	A	43627205	3	1	128	1	0	0	0	0	1	0	0	0	5674	680	24	2	2553	2	FAM75A6	9	43627205	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	10240358	43627205	97586226	255	115644											
GKAP1	80318	broad.mit.edu	37	chr9	86399530	86399530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacatgatacatgaataaCttttacttattgtttaaaaa	3	5	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86399530	A	A	86399530	1	1	128	0	1	0	0	0	0	0	0	0	6487	580	20	3		3	GKAP1	9	86399530	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	42772325	86399530	54813901	256	115645											
GOLM1	51280	broad.mit.edu	37	chr9	88650566	88650566	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagaacacagttagctgtGaccttgccagcatttgattt	8	10	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88650566	T	T	88650566	1	4	128	0	1	0	0	0	0	0	0	0	6631	1305	45	3		3	GOLM1	9	88650566	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2251036	88650566	52562865	257	115646											
SPTLC1	10558	broad.mit.edu	37	chr9	94794917	94794917	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgtaatcccagcacttTggaggccaaggcaggtggat	13	11	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94794917	C	C	94794917	1	2	128	0	1	0	0	0	0	0	0	0	15241	1827	63	5		5	SPTLC1	9	94794917	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	6144351	94794917	46418514	258	115647											
XPA	7507	broad.mit.edu	37	chr9	100455996	100455996	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcttctaaaatgaagcctCctcctgtgtcaattatcttt	4	12	4	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100455996	T	T	100455996	3	4	128	1	0	0	0	0	1	0	0	0	17567	855	30	4	623	4	XPA	9	100455996	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	5661079	100455996	40757435	259	115648											
SVEP1	79987	broad.mit.edu	37	chr9	113173762	113173762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaatgagctatacaacGgggcatgtcttgaccttctg	10	9	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113173762	T	T	113173762	3	4	128	1	0	0	0	0	1	0	0	0	15538	1116	39	1	4534	1	SVEP1	9	113173762	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	12717766	113173762	28039669	260	115649											
KIF12	113220	broad.mit.edu	37	chr9	116859704	116859704	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggggagaccccaggctcaGcaagtcccgaacctgggagg	15	14	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116859704	A	A	116859704	2	1	128	1	0	0	0	0	0	0	0	1	8343	962	34	4		4	KIF12	9	116859704	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	3685942	116859704	24353727	261	115650											
TNC	3371	broad.mit.edu	37	chr9	117810558	117810558	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgtaacaatctcagccctCaagggcttggtttgatgccc	9	13	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117810558	G	G	117810558	3	3	128	1	0	0	0	0	1	0	0	0	16393	825	29	4	1824	4	TNC	9	117810558	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	950854	117810558	23402873	262	115651											
C5	727	broad.mit.edu	37	chr9	123783854	123783854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctactccatcatcaacaCgtgttacacttttgcttgga	6	11	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123783854	A	A	123783854	3	1	128	1	0	0	0	0	1	0	0	0	2303	536	19	3	3919	3	C5	9	123783854	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	5973296	123783854	17429577	263	115652											
ST6GALNAC6	30815	broad.mit.edu	37	chr9	130649020	130649020	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacacattcgtccggccccTtgggctcgtagtagtggtag	13	11	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130649020	C	C	130649020	3	2	128	1	0	0	0	0	1	0	0	0	15346	1609	56	5	145	5	ST6GALNAC6	9	130649020	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	6865166	130649020	10564411	264	115653											
COL5A1	1289	broad.mit.edu	37	chr9	137642617	137642617	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcactgctcccagagtgacCcttgtcttacacttgcagtt	8	13	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137642617	A	A	137642617	1	1	128	0	1	0	0	0	0	0	0	0	3728	638	22	2		2	COL5A1	9	137642617	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6993597	137642617	3570814	265	115654											
C9orf172	389813	broad.mit.edu	37	chr9	139741079	139741079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaccgcgctttctcgcGcatcgcgcgtgtcggcttcc	13	16	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139741079	T	T	139741079	3	4	128	1	0	0	0	0	1	0	0	0	2497	1087	38	3	2215	3	C9orf172	9	139741079	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	2098462	139741079	1472352	266	115655											
TUBB8	347688	broad.mit.edu	37	chr10	93939	93939	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtgggtcagctggaaaccCtgcaggcagtcacagctctc	13	12	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93939	G	G	93939	3	3	128	1	0	0	0	0	1	0	0	0	16887	680	24	4	945	4	TUBB8	10	93939	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08		93939	135440808	267	115656											
C10orf18	54906	broad.mit.edu	37	chr10	5782228	5782228	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggggaaagtcatgccatttCggcatcagcccggccttttg	12	11	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5782228	T	T	5782228	3	4	128	1	0	0	0	0	1	0	0	0	1607	875	31	4	2133	4	C10orf18	10	5782228	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	5688289	5782228	129752519	268	115657											
FRMD4A	55691	broad.mit.edu	37	chr10	13782496	13782496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtccccatgtgagctgGgaaggggccacttactttac	11	12	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13782496	T	T	13782496	1	4	128	0	1	0	0	0	0	0	0	0	6111	1247	43	2		2	FRMD4A	10	13782496	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8000268	13782496	121752251	269	115658											
DCLRE1C	64421	broad.mit.edu	37	chr10	14996080	14996080	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagccctgaccgcgccgCcacttccgggaagccgcgcg	14	19	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14996080	A	A	14996080	1	1	128	0	1	0	0	0	0	0	0	0	4329	754	26	3		3	DCLRE1C	10	14996080	5'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	1213584	14996080	120538667	270	115659											
NMT2	9397	broad.mit.edu	37	chr10	15177202	15177202	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtgttttgttgttgtTgttgttgttgttgttgttgt	12	1	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15177202	G	G	15177202	1	3	128	0	1	0	0	0	0	0	0	0	10599	1827	63	5		5	NMT2	10	15177202	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	181122	15177202	120357545	271	115660											
GRID1	2894	broad.mit.edu	37	chr10	87482866	87482866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgcccatcacgatgcGcatggccatggagttcacgg	12	14	2	0	rs138984541		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87482866	T	T	87482866	3	4	128	1	0	0	0	0	1	0	0	0	6837	1087	38	3	1158	3	GRID1	10	87482866	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	72305664	87482866	48051881	272	115661											
IDE	3416	broad.mit.edu	37	chr10	94267793	94267793	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctttcaacataaaacagatCcacagcatgaagaagttaaa	6	8	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94267793	T	T	94267793	1	4	128	0	1	0	0	0	0	0	0	0	7563	870	30	4		4	IDE	10	94267793	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6784927	94267793	41266954	273	115662											
MYOF	26509	broad.mit.edu	37	chr10	95069721	95069721	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggcagatgccaagggagaGgaccaactgcaactcacaag	13	10	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95069721	C	C	95069721	1	2	128	0	1	0	0	0	0	0	0	0	10183	1015	35	4		4	MYOF	10	95069721	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	801928	95069721	40465026	274	115663											
NOC3L	64318	broad.mit.edu	37	chr10	96109748	96109748	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtctcgatctcctgacCtcgtgatctgcctgcctcgg	12	14	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96109748	A	A	96109748	1	1	128	0	1	0	0	0	0	0	0	0	10609	696	24	2		2	NOC3L	10	96109748	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1040027	96109748	39424999	275	115664											
HELLS	3070	broad.mit.edu	37	chr10	96313838	96313838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgccaaaaaaattaaggtAtgtcagaaagtgttcataat	7	4	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96313838	G	G	96313838	1	3	128	0	1	0	0	0	0	0	0	0	7113	464	16	5		5	HELLS	10	96313838	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	204090	96313838	39220909	276	115665											
CYP2C9	1559	broad.mit.edu	37	chr10	96740969	96740969	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaagagattgaacgtgtgAttggcagaaaccggagcccc	14	8	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96740969	T	T	96740969	3	4	128	1	0	0	0	0	1	0	0	0	4201	333	12	5	1017	5	CYP2C9	10	96740969	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	427131	96740969	38793778	277	115666											
PKD2L1	9033	broad.mit.edu	37	chr10	102054421	102054421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgagtgaaactgagagaCcaggtctgggctttacccag	12	9	1	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102054421	A	A	102054421	1	1	128	0	1	0	0	0	0	0	0	0	12062	522	18	3		3	PKD2L1	10	102054421	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5313452	102054421	33480326	278	115667											
NPM3	10360	broad.mit.edu	37	chr10	103542607	103542607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctcaccatggttagtgCcagcacgtgctccgcatcat	9	16	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103542607	A	A	103542607	3	1	128	1	0	0	0	0	1	0	0	0	10684	739	26	3	359	3	NPM3	10	103542607	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1488186	103542607	31992140	279	115668											
GBF1	8729	broad.mit.edu	37	chr10	104019669	104019669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaaaatatgaactatgGctaattttcttttcctcaga	5	7	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104019669	T	T	104019669	1	4	128	0	1	0	0	0	0	0	0	0	6333	1218	42	3		3	GBF1	10	104019669	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	477062	104019669	31515078	280	115669											
ACTR1A	10121	broad.mit.edu	37	chr10	104244124	104244124	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accacccctgtggtcctgccTgtagcgtaactgaagcaaag	10	13	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104244124	A	A	104244124	2	1	128	1	0	0	0	0	0	0	0	1	209	1567	55	5		5	ACTR1A	10	104244124	Silent	SNP	T	TCGA-44-6776-01A-11D-1855-08	224455	104244124	31290623	281	115670											
NRAP	4892	broad.mit.edu	37	chr10	115356917	115356917	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accactgtggtgaacttgatActgtctggttttttacggta	10	7	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115356917	G	G	115356917	2	3	128	1	0	0	0	0	0	0	0	1	10733	388	14	5		5	NRAP	10	115356917	Silent	SNP	A	TCGA-44-6776-01A-11D-1855-08	11112793	115356917	20177830	282	115671											
AFAP1L2	84632	broad.mit.edu	37	chr10	116056568	116056568	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctggttggtcagtgccAgagactgagctgaaggcatg	14	8	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116056568	G	G	116056568	1	3	128	0	1	0	0	0	0	0	0	0	355	203	7	5		5	AFAP1L2	10	116056568	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	699651	116056568	19478179	283	115672											
GFRA1	2674	broad.mit.edu	37	chr10	118029077	118029077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttaactggttcatatgggGaatcctccagcagatcattt	9	8	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118029077	T	T	118029077	3	4	128	1	0	0	0	0	1	0	0	0	6411	1174	41	3	1073	3	GFRA1	10	118029077	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1972509	118029077	17505670	284	115673											
HSPA12A	259217	broad.mit.edu	37	chr10	118435785	118435786	+	Intron	DNP	CC	AA	AA													ccctgcccagtcctgcagggCccttgcctgtggctcccaga							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	118435786	AA	AA	118435785	1	1	128	0	1	0	0	0	0	0	0	0	7473	754	26	3		3	HSPA12A	10	118435785	Intron	DNP	CC	TCGA-44-6776-01A-11D-1855-08	406708	118435785	17098962	285	115674											
DMBT1	1755	broad.mit.edu	37	chr10	124359397	124359397	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagctggcaatagtggacaGgatctgcctcgaccccttac	11	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124359397	C	C	124359397	1	2	128	0	1	0	0	0	0	0	0	0	4617	1015	35	4		4	DMBT1	10	124359397	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5923612	124359397	11175350	286	115675											
GPR26	2849	broad.mit.edu	37	chr10	125426536	125426536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccgcttccattgcaagCgcatcgacgtgatcaccatg	10	14	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125426536	A	A	125426536	3	1	128	1	0	0	0	0	1	0	0	0	6749	768	27	3	615	3	GPR26	10	125426536	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1067139	125426536	10108211	287	115676											
OR52M1	119772	broad.mit.edu	37	chr11	4566472	4566472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctccttctggctcactGgcatcccagggctggagtcc	11	16	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4566472	T	T	4566472	3	4	128	1	0	0	0	0	1	0	0	0	11220	1348	47	2	54	2	OR52M1	11	4566472	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08		4566472	130440044	288	115677											
CCKBR	887	broad.mit.edu	37	chr11	6292734	6292734	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccattgcttcgctgtccagGcttagctacaccaccatcag	7	15	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6292734	C	C	6292734	3	2	128	1	0	0	0	0	1	0	0	0	2909	1194	42	4	1323	4	CCKBR	11	6292734	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1726262	6292734	128713782	289	115678											
OR10A2	341276	broad.mit.edu	37	chr11	6891249	6891249	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggctgtgccactcagatGtatttcttcttcttctttgg	8	10	5	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6891249	A	A	6891249	3	1	128	1	0	0	0	0	1	0	0	0	10984	1377	48	4	266	4	OR10A2	11	6891249	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	598515	6891249	128115267	290	115679											
KCNC1	3746	broad.mit.edu	37	chr11	17757877	17757877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgctggatgacgtacCgccagcaccgcgacgccgag	13	16	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17757877	A	A	17757877	3	1	128	1	0	0	0	0	1	0	0	0	8084	652	23	1	330	1	KCNC1	11	17757877	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	10866628	17757877	117248639	291	115680											
LDHC	3948	broad.mit.edu	37	chr11	18451592	18451592	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtatataacgcgatgagttTtgataaatgtaatcactcat	7	5	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18451592	A	A	18451592	1	1	128	0	1	0	0	0	0	0	0	0	8774	1856	64	5		5	LDHC	11	18451592	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	693715	18451592	116554924	292	115681											
SLC1A2	6506	broad.mit.edu	37	chr11	35313759	35313759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaactttgtgatgggagGgttttgagaaatgagaaatg	14	1	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35313759	T	T	35313759	1	4	128	0	1	0	0	0	0	0	0	0	14545	1247	43	2		2	SLC1A2	11	35313759	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	16862167	35313759	99692757	293	115682											
LDLRAD3	143458	broad.mit.edu	37	chr11	36103274	36103274	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccattgcatcattggtcgcTtccggtgcaatgggtttgag	12	9	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36103274	A	A	36103274	3	1	128	1	0	0	0	0	1	0	0	0	8779	1609	56	5	275	5	LDLRAD3	11	36103274	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	789515	36103274	98903242	294	115683											
OR8I2	120586	broad.mit.edu	37	chr11	55861219	55861219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtccaactggctgggaGtaatgccatatgtgataggc	13	7	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55861219	T	T	55861219	3	4	128	1	0	0	0	0	1	0	0	0	11334	1029	36	3	438	3	OR8I2	11	55861219	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	19757945	55861219	79145297	295	115684											
OR8H1	219469	broad.mit.edu	37	chr11	56057871	56057871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaattaattttcaggatgGtagagagaatggacacatag	12	3	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56057871	T	T	56057871	3	4	128	1	0	0	0	0	1	0	0	0	11331	1261	44	3	269	3	OR8H1	11	56057871	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	196652	56057871	78948645	296	115685											
OR5B21	219968	broad.mit.edu	37	chr11	58275598	58275598	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggccagcttgaattagCctggtgattaaagaagaggc	13	6	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58275598	A	A	58275598	1	1	128	0	1	0	0	0	0	0	0	0	11245	754	26	3		3	OR5B21	11	58275598	5'Flank	SNP	C	TCGA-44-6776-01A-11D-1855-08	2217727	58275598	76730918	297	115686											
GIF	2694	broad.mit.edu	37	chr11	59610073	59610073	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcctccgaaggggatagaGaaccttcatcagactcacag	12	11	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59610073	T	T	59610073	1	4	128	0	1	0	0	0	0	0	0	0	6440	957	33	3		3	GIF	11	59610073	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1334475	59610073	75396443	298	115687											
PPP2R5B	5526	broad.mit.edu	37	chr11	64693486	64693486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggtgggaggcagcggGcagctgccaagagagagagt	22	6	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64693486	T	T	64693486	1	4	128	0	1	0	0	0	0	0	0	0	12494	1218	42	3		3	PPP2R5B	11	64693486	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5083413	64693486	70313030	299	115688											
RIN1	9610	broad.mit.edu	37	chr11	66099844	66099844	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccttcagcagttgtctcaGactgttcccgaatgtccctg	8	15	2	1	rs3181770		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66099844	A	A	66099844	3	1	128	1	0	0	0	0	1	0	0	0	13482	942	33	4	100	4	RIN1	11	66099844	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1406358	66099844	68906672	300	115689											
SYT12	91683	broad.mit.edu	37	chr11	66807645	66807645	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatgcgcgtcagcctgctgCcggacgagcagatcgtgggc	15	13	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66807645	T	T	66807645	3	4	128	1	0	0	0	0	1	0	0	0	15587	739	26	4	602	4	SYT12	11	66807645	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	707801	66807645	68198871	301	115690											
ARAP1	116985	broad.mit.edu	37	chr11	72422035	72422036	+	Intron	DEL	AC	-	-													agtcttctctaccctcttctAcacacacacacaacacccca							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72422036	-	-	72422035	6	5	128	0	1	1	0	1	0	0	0	0	840	406	14	0		0	ARAP1	11	72422035	Intron	DEL	AC	TCGA-44-6776-01A-11D-1855-08	5614390	72422035	62584481	302	115691											
MAP6	4135	broad.mit.edu	37	chr11	75317068	75317068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtacggagagacagacCgcaaatacagaaacacaaaa	8	10	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75317068	A	A	75317068	1	1	128	0	1	0	0	0	0	0	0	0	9356	667	23	1		1	MAP6	11	75317068	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2895033	75317068	59689448	303	115692											
ODZ4	26011	broad.mit.edu	37	chr11	78399348	78399348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgcattctacctcatGccatggttttgctgtgctct	9	11	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78399348	T	T	78399348	1	4	128	0	1	0	0	0	0	0	0	0	10932	1334	46	3		3	ODZ4	11	78399348	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3082280	78399348	56607168	304	115693											
DLG2	1740	broad.mit.edu	37	chr11	83673918	83673918	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatccaattaactaacaggCatatctgacctggtgtagtc	7	9	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83673918	G	G	83673918	1	3	128	0	1	0	0	0	0	0	0	0	4595	725	25	4		4	DLG2	11	83673918	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5274570	83673918	51332598	305	115694											
CWF19L2	143884	broad.mit.edu	37	chr11	107299764	107299764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccactacacaaagagccCtgagctaccaatgctgaaga	7	12	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107299764	A	A	107299764	3	1	128	1	0	0	0	0	1	0	0	0	4105	680	24	2	1534	2	CWF19L2	11	107299764	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	23625846	107299764	27706752	306	115695											
BCO2	83875	broad.mit.edu	37	chr11	112046188	112046188	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaaataagccccgccccTtaagctgcgtcctctctttg	8	14	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112046188	C	C	112046188	1	2	128	0	1	0	0	0	0	0	0	0	1390	1624	56	5		5	BCO2	11	112046188	5'Flank	SNP	T	TCGA-44-6776-01A-11D-1855-08	4746424	112046188	22960328	307	115696											
FAM55B	120406	broad.mit.edu	37	chr11	114569375	114569375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgccagtacatggatgaCagagaccaagaagccttcta	10	10	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114569375	A	A	114569375	3	1	128	1	0	0	0	0	1	0	0	0	5636	477	17	3	751	3	FAM55B	11	114569375	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	2523187	114569375	20437141	308	115697											
BCL9L	283149	broad.mit.edu	37	chr11	118772195	118772195	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcagcccagactgccccaTgggagggctcaggaggcccc	13	17	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118772195	A	A	118772195	3	1	128	1	0	0	0	0	1	0	0	0	1387	1464	51	5	2254	5	BCL9L	11	118772195	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	4202820	118772195	16234321	309	115698											
UBASH3B	84959	broad.mit.edu	37	chr11	122666894	122666894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacagccagcccggccccCagaagcgatgcctttttgtg	10	15	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122666894	A	A	122666894	3	1	128	1	0	0	0	0	1	0	0	0	16966	595	21	2	1174	2	UBASH3B	11	122666894	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	3894699	122666894	12339622	310	115699											
OR4D5	219875	broad.mit.edu	37	chr11	123810710	123810710	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacattgccatttcccagccCctgcactacacgctcattat	4	16	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123810710	A	A	123810710	2	1	128	1	0	0	0	0	0	0	0	1	11151	610	22	2		2	OR4D5	11	123810710	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	1143816	123810710	11195806	311	115700											
CHEK1	1111	broad.mit.edu	37	chr11	125499295	125499295	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccctcttaggtttatctgCatggtattggaataactcac	7	9	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125499295	T	T	125499295	3	4	128	1	0	0	0	0	1	0	0	0	3365	710	25	4	378	4	CHEK1	11	125499295	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1688585	125499295	9507221	312	115701											
GLB1L2	89944	broad.mit.edu	37	chr11	134243835	134243835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggccagatcggctggcCgaggtgaggggtggcacccg	20	11	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134243835	A	A	134243835	1	1	128	0	1	0	0	0	0	0	0	0	6493	667	23	1		1	GLB1L2	11	134243835	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	8744540	134243835	762681	313	115702											
CACNA1C	775	broad.mit.edu	37	chr12	2613703	2613703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggttctcggtgtgttgagCgggtaagctgaccgtttcta	14	8	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2613703	T	T	2613703	1	4	128	0	1	0	0	0	0	0	0	0	2566	767	27	4		4	CACNA1C	12	2613703	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08		2613703	131238192	314	115703											
CACNA1C	775	broad.mit.edu	37	chr12	2797830	2797830	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctgagaccacccccgGtggcgggggcagcagcgccg	18	15	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2797830	A	A	2797830	3	1	128	1	0	0	0	0	1	0	0	0	2566	1261	44	4	6893	4	CACNA1C	12	2797830	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	184127	2797830	131054065	315	115704											
RAD51AP1	10635	broad.mit.edu	37	chr12	4657319	4657319	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtctcctcatatctctaaTtgcagtgtagccagtgatta	7	9	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4657319	G	G	4657319	3	3	128	1	0	0	0	0	1	0	0	0	13094	1490	52	5	454	5	RAD51AP1	12	4657319	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	1859489	4657319	129194576	316	115705											
NTF3	4908	broad.mit.edu	37	chr12	5603347	5603347	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcctgctcttaacacctgtGtttccttttcagatcttaca	5	12	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5603347	C	C	5603347	1	2	128	0	1	0	0	0	0	0	0	0	10791	1392	48	4		4	NTF3	12	5603347	5'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	946028	5603347	128248548	317	115706											
RERGL	79785	broad.mit.edu	37	chr12	18237478	18237478	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgactagtttgtggctccCggattctgtagatcagcgct	11	9	2	2	rs61757396	byFrequency;by1000genomes	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18237478	T	T	18237478	3	4	128	1	0	0	0	0	1	0	0	0	13341	652	23	4	317	4	RERGL	12	18237478	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	12634131	18237478	115614417	318	115707											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25398284	T	T	25398284	3	4	128	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	7160806	25398284	108453611	319	115708											
DDX11	1663	broad.mit.edu	37	chr12	31256670	31256670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgtgcagaaggtcaGtcctacctttttctttctga	9	10	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31256670	T	T	31256670	1	4	128	0	1	0	0	0	0	0	0	0	4376	1044	36	3		3	DDX11	12	31256670	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5858386	31256670	102595225	320	115709											
ENDOU	8909	broad.mit.edu	37	chr12	48119241	48119241	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtggctgttggactttcActagagtcagatgaatgtca	13	6	3	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48119241	T	T	48119241	1	4	128	0	1	0	0	0	0	0	0	0	5158	174	6	5		5	ENDOU	12	48119241	5'UTR	SNP	A	TCGA-44-6776-01A-11D-1855-08	16862571	48119241	85732654	321	115710											
OR8S1	341568	broad.mit.edu	37	chr12	48921695	48921695	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacgtatctgttacaagGgggaaagaagcctccgggac	12	8	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48921695	A	A	48921695	3	1	128	1	0	0	0	0	1	0	0	0	11340	1246	43	4	895	4	OR8S1	12	48921695	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	802454	48921695	84930200	322	115711											
MCRS1	10445	broad.mit.edu	37	chr12	49954103	49954103	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttactgtcatcaatcaggtCctctgcatcagagaagttca	7	11	6	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49954103	G	G	49954103	3	3	128	1	0	0	0	0	1	0	0	0	9492	855	30	4	560	4	MCRS1	12	49954103	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1032408	49954103	83897792	323	115712											
KRT6B	3854	broad.mit.edu	37	chr12	52845639	52845639	+	Frame_Shift_Del	DEL	C	-	-													cgccactgatggcacagctgCcccctccaatggagatcctc							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52845639	-	-	52845639	7	5	128	1	0	1	0	1	0	0	0	0	8552	739	26	0	1506	0	KRT6B	12	52845639	Frame_Shift_Del	DEL	C	TCGA-44-6776-01A-11D-1855-08	2891536	52845639	81006256	324	115713											
GEFT	115557	broad.mit.edu	37	chr12	58007844	58007844	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggggtccccgagagtcttCgaggccgtgacaggattgtg	17	9	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58007844	T	T	58007844	4	4	128	1	0	0	0	0	0	1	0	0	6392	876	31	4	842	4	GEFT	12	58007844	Nonsense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	5162205	58007844	75844051	325	115714											
TPH2	121278	broad.mit.edu	37	chr12	72335413	72335413	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgacaaaggcaacaagggaaGcagcaaacgtgaagctgcta	12	9	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72335413	A	A	72335413	3	1	128	1	0	0	0	0	1	0	0	0	16526	971	34	4	161	4	TPH2	12	72335413	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	14327569	72335413	61516482	326	115715											
SYT1	6857	broad.mit.edu	37	chr12	79679569	79679569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgtgtttctttcagtgCcaccgtgggccttaattgca	10	10	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79679569	A	A	79679569	3	1	128	1	0	0	0	0	1	0	0	0	15584	739	26	3	175	3	SYT1	12	79679569	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	7344156	79679569	54172326	327	115716											
LIN7A	8825	broad.mit.edu	37	chr12	81239642	81239642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcacattaaaaccaaggCcttcatcagtctttggcagt	6	12	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81239642	A	A	81239642	3	1	128	1	0	0	0	0	1	0	0	0	8883	739	26	3	359	3	LIN7A	12	81239642	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1560073	81239642	52612253	328	115717											
MGAT4C	25834	broad.mit.edu	37	chr12	86373314	86373314	+	Frame_Shift_Del	DEL	C	-	-													cattttgccgatcttctgttCcagtatttactttaattttt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86373314	-	-	86373314	7	5	128	1	0	1	0	1	0	0	0	0	9640	855	30	0	250	0	MGAT4C	12	86373314	Frame_Shift_Del	DEL	C	TCGA-44-6776-01A-11D-1855-08	5133672	86373314	47478581	329	115718											
RPH3A	22895	broad.mit.edu	37	chr12	113334281	113334281	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggttcttgaggcagagaagGaccgtaataataataacaac	10	6	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113334281	T	T	113334281	1	4	128	0	1	0	0	0	0	0	0	0	13662	1189	41	3		3	RPH3A	12	113334281	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	26960967	113334281	20517614	330	115719											
DDX54	79039	broad.mit.edu	37	chr12	113600946	113600946	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccactcacccccgctcgCtgtcaaagtccttgggccgg	10	18	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113600946	T	T	113600946	3	4	128	1	0	0	0	0	1	0	0	0	4405	797	28	4	596	4	DDX54	12	113600946	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	266665	113600946	20250949	331	115720											
TBX5	6910	broad.mit.edu	37	chr12	114823174	114823174	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttccatgtgcctggcattCtacgggcaggaaggctggtg	14	9	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114823174	A	A	114823174	1	1	128	0	1	0	0	0	0	0	0	0	15783	928	32	3		3	TBX5	12	114823174	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1222228	114823174	19028721	332	115721											
PABPC3	5042	broad.mit.edu	37	chr13	25671157	25671157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaagtggaacggcagaCggaacttaagcgcacatttg	12	7	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25671157	A	A	25671157	3	1	128	1	0	0	0	0	1	0	0	0	11459	536	19	3	823	3	PABPC3	13	25671157	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08		25671157	89498721	333	115722											
CDX2	1045	broad.mit.edu	37	chr13	28538912	28538912	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcctcctgcttcagtctctCcacagatttagatggcccct	6	15	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28538912	A	A	28538912	1	1	128	0	1	0	0	0	0	0	0	0	3213	870	30	3		3	CDX2	13	28538912	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2867755	28538912	86630966	334	115723											
TRPC4	7223	broad.mit.edu	37	chr13	38320680	38320680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctatagcaatatggaaCagggtttatatgtccttggc	10	7	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38320680	A	A	38320680	1	1	128	0	1	0	0	0	0	0	0	0	16705	493	17	3		3	TRPC4	13	38320680	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	9781768	38320680	76849198	335	115724											
DGKH	160851	broad.mit.edu	37	chr13	42644789	42644789	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagatctctgtgcagtacAtttgcagagtgaatatactt	9	6	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42644789	T	T	42644789	1	4	128	0	1	0	0	0	0	0	0	0	4510	232	8	5		5	DGKH	13	42644789	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	4324109	42644789	72525089	336	115725											
ENOX1	55068	broad.mit.edu	37	chr13	43930271	43930271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttgtcggtgctagaccCtaatcgcatcctataacctg	7	12	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43930271	A	A	43930271	3	1	128	1	0	0	0	0	1	0	0	0	5168	681	24	2	1364	2	ENOX1	13	43930271	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1285482	43930271	71239607	337	115726											
ZC3H13	23091	broad.mit.edu	37	chr13	46543921	46543922	+	Frame_Shift_Ins	INS	-	T	T													atttctgtctgttctctctgINStttatctacagaagaaactt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46543922	T	T	46543921	7	5	128	1	0	1	1	0	0	0	0	0	17691	1386	48	0	1952	0	ZC3H13	13	46543921	Frame_Shift_Ins	INS	-	TCGA-44-6776-01A-11D-1855-08	2613650	46543921	68625957	338	115727											
ATP7B	540	broad.mit.edu	37	chr13	52511913	52511913	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgccctcggcctctgGgtccagtcagtgatgttggt	12	14	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52511913	C	C	52511913	1	2	128	0	1	0	0	0	0	0	0	0	1195	1247	43	4		4	ATP7B	13	52511913	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5967992	52511913	62657965	339	115728											
SLITRK1	114798	broad.mit.edu	37	chr13	84454347	84454347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcgtgtccaggtaattGctatccatgtatagccacct	9	11	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84454347	T	T	84454347	3	4	128	1	0	0	0	0	1	0	0	0	14856	1310	46	3	798	3	SLITRK1	13	84454347	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	31942434	84454347	30715531	340	115729											
TMTC4	84899	broad.mit.edu	37	chr13	101308647	101308647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttactttctctaaatgCtttacagtagccaaggaaag	7	8	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101308647	A	A	101308647	3	1	128	1	0	0	0	0	1	0	0	0	16386	797	28	3	1710	3	TMTC4	13	101308647	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	16854300	101308647	13861231	341	115730											
FAM155A	728215	broad.mit.edu	37	chr13	107823182	107823182	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaaggaaatacatttgCgacatagtagagtgaagctg	13	5	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107823182	G	G	107823182	1	3	128	0	1	0	0	0	0	0	0	0	5511	783	27	4		4	FAM155A	13	107823182	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6514535	107823182	7346696	342	115731											
COL4A1	1282	broad.mit.edu	37	chr13	110817329	110817329	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggggggccaggaggacCcgggagacctgtgggaatag	19	9	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110817329	A	A	110817329	3	1	128	1	0	0	0	0	1	0	0	0	3721	623	22	2	1007	2	COL4A1	13	110817329	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	2994147	110817329	4352549	343	115732											
TFDP1	7027	broad.mit.edu	37	chr13	114294584	114294584	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgacgaggacgactgacGtcctccccacttcagattcg	10	13	1	3	rs150466630		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114294584	A	A	114294584	1	1	128	0	1	0	0	0	0	0	0	0	15920	1160	40	4		4	TFDP1	13	114294584	3'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	3477255	114294584	875294	344	115733											
DHRS2	10202	broad.mit.edu	37	chr14	24113979	24113979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctggtggccttcccggGgccctgcccatcttgtttta	11	15	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24113979	A	A	24113979	1	1	128	0	1	0	0	0	0	0	0	0	4530	1247	43	4		4	DHRS2	14	24113979	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08		24113979	83235561	345	115734											
DCAF11	80344	broad.mit.edu	37	chr14	24586758	24586758	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcggagttctgtgggacaGactatgatgtgtgtgtccat	13	7	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24586758	T	T	24586758	1	4	128	0	1	0	0	0	0	0	0	0	4295	957	33	3		3	DCAF11	14	24586758	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	472779	24586758	82762782	346	115735											
ADCY4	196883	broad.mit.edu	37	chr14	24800251	24800251	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctggtcgaacttgccaaaGagctcattgagcatgagcac	10	10	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24800251	C	C	24800251	2	2	128	1	0	0	0	0	0	0	0	1	296	929	33	4		4	ADCY4	14	24800251	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	213493	24800251	82549289	347	115736											
NYNRIN	57523	broad.mit.edu	37	chr14	24885566	24885566	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccagggtctgggtagtcccGacgcaactccggagggatct	14	13	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24885566	A	A	24885566	2	1	128	1	0	0	0	0	0	0	0	1	10891	1045	37	4		4	NYNRIN	14	24885566	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	85315	24885566	82463974	348	115737											
NIN	51199	broad.mit.edu	37	chr14	51243771	51243771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatcttcacaaacttcttGcagtttctcttctatccagt	3	12	5	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51243771	T	T	51243771	3	4	128	1	0	0	0	0	1	0	0	0	10512	1328	46	3	6087	3	NIN	14	51243771	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	26358205	51243771	56105769	349	115738											
C14orf115	55237	broad.mit.edu	37	chr14	74825221	74825221	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaggagaagcaggagaagGaggctggcagggatgtgaca	19	5	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74825221	T	T	74825221	4	4	128	1	0	0	0	0	0	1	0	0	1753	1175	41	3	1737	3	C14orf115	14	74825221	Nonsense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	23581450	74825221	32524319	350	115739											
DIO2	1734	broad.mit.edu	37	chr14	80677806	80677807	+	Missense_Mutation	DNP	GG	TT	TT													gatcagcaagtctacgctgaGgatgcccatcttctctgcct							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	80677807	TT	TT	80677806	3	4	128	1	0	0	0	0	1	0	0	0	4565	1000	35	2	931	2	DIO2	14	80677806	Missense_Mutation	DNP	GG	TCGA-44-6776-01A-11D-1855-08	5852585	80677806	26671734	351	115740											
SERPINA10	51156	broad.mit.edu	37	chr14	94756668	94756668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtgcctcatggagatctttCgcagcaggctgaatccgaag	12	11	2	2	rs143859072	byFrequency	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94756668	A	A	94756668	3	1	128	1	0	0	0	0	1	0	0	0	14200	884	31	3	1087	3	SERPINA10	14	94756668	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	14078862	94756668	12592872	352	115741											
EML1	2009	broad.mit.edu	37	chr14	100345068	100345068	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaagctgggagtactcttgGagaagaagaccttctcctca	10	10	3	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100345068	C	C	100345068	1	2	128	0	1	0	0	0	0	0	0	0	5138	1189	41	4		4	EML1	14	100345068	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5588400	100345068	7004472	353	115742											
RCOR1	23186	broad.mit.edu	37	chr14	103181058	103181058	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttccgcaaatctcaaaggAgcattttgtttcgaaggaat	8	8	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103181058	C	C	103181058	1	2	128	0	1	0	0	0	0	0	0	0	13290	319	11	5		5	RCOR1	14	103181058	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	2835990	103181058	4168482	354	115743											
KIF26A	26153	broad.mit.edu	37	chr14	104624007	104624007	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggctctggggtgcccaGgcctgtctctcccactccgg	14	16	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104624007	T	T	104624007	1	4	128	0	1	0	0	0	0	0	0	0	8364	1015	35	2		2	KIF26A	14	104624007	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1442949	104624007	2725533	355	115744											
OR4N4	283694	broad.mit.edu	37	chr15	22332646	22332646	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctaagctgtgttactctgCcaaagatgttaggggatttc	11	8	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22332646	A	A	22332646	1	1	128	0	1	0	0	0	0	0	0	0	11172	754	26	3		3	OR4N4	15	22332646	5'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08		22332646	80198746	356	115745											
OR4M2	390538	broad.mit.edu	37	chr15	22369024	22369024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtggctctctcctggaGggggggcttcattcattcta	13	11	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22369024	T	T	22369024	3	4	128	1	0	0	0	0	1	0	0	0	11170	1000	35	2	451	2	OR4M2	15	22369024	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	36378	22369024	80162368	357	115746											
OR4M2	390538	broad.mit.edu	37	chr15	22369051	22369051	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcattcattctatcatacAggtggctctcattgttcgac	6	11	5	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22369051	G	G	22369051	3	3	128	1	0	0	0	0	1	0	0	0	11170	188	7	5	478	5	OR4M2	15	22369051	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	27	22369051	80162341	358	115747											
CHRFAM7A	89832	broad.mit.edu	37	chr15	30659770	30659770	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtgagacccggggatccTgtggcactgcacgtcacagg	16	11	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30659770	C	C	30659770	1	2	128	0	1	0	0	0	0	0	0	0	3406	1595	55	5		5	CHRFAM7A	15	30659770	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	8290719	30659770	71871622	359	115748											
OTUD7A	161725	broad.mit.edu	37	chr15	32059877	32059877	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtcttcctggcttagttcTctatcatcaactgcattttc	5	12	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32059877	C	C	32059877	1	2	128	0	1	0	0	0	0	0	0	0	11412	1566	54	5		5	OTUD7A	15	32059877	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	1400107	32059877	70471515	360	115749											
RYR3	6263	broad.mit.edu	37	chr15	33765371	33765371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagctctcagaagtgaggCcttggctgtatgtgtacttg	12	9	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33765371	T	T	33765371	1	4	128	0	1	0	0	0	0	0	0	0	13881	754	26	4		4	RYR3	15	33765371	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1705494	33765371	68766021	361	115750											
GJD2	57369	broad.mit.edu	37	chr15	35045635	35045635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtcactgacaggaaacccCtgctcctcccttccctttgc	7	18	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35045635	A	A	35045635	1	1	128	0	1	0	0	0	0	0	0	0	6481	696	24	2		2	GJD2	15	35045635	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1280264	35045635	67485757	362	115751											
BAHD1	22893	broad.mit.edu	37	chr15	40751953	40751953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcacccctttccagcaCcctccctggggctcctctcg	8	20	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40751953	A	A	40751953	3	1	128	1	0	0	0	0	1	0	0	0	1302	506	18	3	1292	3	BAHD1	15	40751953	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	5706318	40751953	61779439	363	115752											
CASC5	57082	broad.mit.edu	37	chr15	40951477	40951477	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctcaaaaaaaaaaaaaaaGaaattgtgtttcatgctatt	5	4	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40951477	A	A	40951477	1	1	128	0	1	0	0	0	0	0	0	0	2689	957	33	4		4	CASC5	15	40951477	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	199524	40951477	61579915	364	115753											
CAPN3	825	broad.mit.edu	37	chr15	42691595	42691595	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccaagttcctgtgaactAttttattattgtgctgtgtt	8	6	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42691595	G	G	42691595	1	3	128	0	1	0	0	0	0	0	0	0	2654	464	16	5		5	CAPN3	15	42691595	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	1740118	42691595	59839797	365	115754											
HDC	3067	broad.mit.edu	37	chr15	50546389	50546389	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgaagagcttcccctcGgagtgagaagttgtcatcca	10	11	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50546389	T	T	50546389	2	4	128	1	0	0	0	0	0	0	0	1	7082	1124	39	1		1	HDC	15	50546389	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	7854794	50546389	51985003	366	115755											
ALDH1A2	8854	broad.mit.edu	37	chr15	58247560	58247560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggtgcagtttatcacCtgcgaacagcaagtcctggg	15	9	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58247560	A	A	58247560	1	1	128	0	1	0	0	0	0	0	0	0	491	696	24	2		2	ALDH1A2	15	58247560	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	7701171	58247560	44283832	367	115756											
DENND4A	10260	broad.mit.edu	37	chr15	65989642	65989642	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttttttatctttttcttcTtgaatgtcttcagtagatgt	5	7	5	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65989642	C	C	65989642	2	2	128	1	0	0	0	0	0	0	0	1	4473	1606	56	5		5	DENND4A	15	65989642	Silent	SNP	T	TCGA-44-6776-01A-11D-1855-08	7742082	65989642	36541750	368	115757											
GOLGA6A	342096	broad.mit.edu	37	chr15	74365170	74365170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtgctcctaaggggacgGgaaacagagtgagaaggcac	16	7	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74365170	T	T	74365170	1	4	128	0	1	0	0	0	0	0	0	0	6621	1247	43	2		2	GOLGA6A	15	74365170	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8375528	74365170	28166222	369	115758											
CYP11A1	1583	broad.mit.edu	37	chr15	74654301	74654301	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgaaagaaggcatgaaTattgtggaggccacggagcg	16	5	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74654301	C	C	74654301	1	2	128	0	1	0	0	0	0	0	0	0	4177	1421	49	5		5	CYP11A1	15	74654301	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	289131	74654301	27877091	370	115759											
KIAA1199	57214	broad.mit.edu	37	chr15	81201518	81201518	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagctggtgggtcagtacccGattcacttccacctggccgg	12	14	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81201518	A	A	81201518	2	1	128	1	0	0	0	0	0	0	0	1	8283	1045	37	4		4	KIAA1199	15	81201518	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	6547217	81201518	21329874	371	115760											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84488857	84488857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccacgcctactgtcaaTaaacagaacccttttcttct	5	13	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84488857	C	C	84488857	1	2	128	0	1	0	0	0	0	0	0	0	276	1421	49	5		5	ADAMTSL3	15	84488857	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	3287339	84488857	18042535	372	115761											
SLC28A1	9154	broad.mit.edu	37	chr15	85438235	85438235	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggccctggctctgtttgtCctcacctgtgtggtcctcac	11	14	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85438235	A	A	85438235	2	1	128	1	0	0	0	0	0	0	0	1	14645	842	30	3		3	SLC28A1	15	85438235	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	949378	85438235	17093157	373	115762											
ACAN	176	broad.mit.edu	37	chr15	89414526	89414526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggaaggtggggtgaacGcaggaacctatgccataaga	15	7	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89414526	T	T	89414526	1	4	128	0	1	0	0	0	0	0	0	0	117	1102	38	3		3	ACAN	15	89414526	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3976291	89414526	13116866	374	115763											
VPS33B	26276	broad.mit.edu	37	chr15	91549584	91549584	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctaggtgggcccattgcTagcacccacaccctcacctt	8	18	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91549584	A	A	91549584	1	1	128	0	1	0	0	0	0	0	0	0	17329	1537	53	5		5	VPS33B	15	91549584	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	2135058	91549584	10981808	375	115764											
ST8SIA2	8128	broad.mit.edu	37	chr15	92977458	92977459	+	Intron	INS	-	T	T													catcatgtctaccctctttcINStttttttttcccttccagag							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92977459	T	T	92977458	6	5	128	0	1	1	1	0	0	0	0	0	15350	928	32	0		0	ST8SIA2	15	92977458	Intron	INS	-	TCGA-44-6776-01A-11D-1855-08	1427874	92977458	9553934	376	115765											
ZNF263	10127	broad.mit.edu	37	chr16	3334041	3334041	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcttcggcctgagatgCgcacgaaggagcagatcttg	16	9	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3334041	T	T	3334041	3	4	128	1	0	0	0	0	1	0	0	0	17929	768	27	4	225	4	ZNF263	16	3334041	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08		3334041	87020712	377	115766											
CORO7	79585	broad.mit.edu	37	chr16	4466396	4466396	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacccctgtggggtccggGcagggggaggggcagccgga	22	11	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4466396	A	A	4466396	1	1	128	0	1	0	0	0	0	0	0	0	3791	1218	42	4		4	CORO7	16	4466396	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1132355	4466396	85888357	378	115767											
SMG1	23049	broad.mit.edu	37	chr16	18839341	18839341	+	Intron	DEL	G	-	-													atgccctggaaggaagatctGgcaaaacacacctgaactgt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18839341	-	-	18839341	6	5	128	0	1	1	0	1	0	0	0	0	14909	1363	47	0		0	SMG1	16	18839341	Intron	DEL	G	TCGA-44-6776-01A-11D-1855-08	14372945	18839341	71515412	379	115768											
SYT17	51760	broad.mit.edu	37	chr16	19236108	19236108	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctttctacaatgaatccttCagcttcaaagttccccaaga	4	13	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19236108	G	G	19236108	3	3	128	1	0	0	0	0	1	0	0	0	15592	825	29	4	1202	4	SYT17	16	19236108	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	396767	19236108	71118645	380	115769											
ACSM5	54988	broad.mit.edu	37	chr16	20435240	20435240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctaatttttggcagacGgtgggtggccttgaccgaat	12	8	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20435240	T	T	20435240	3	4	128	1	0	0	0	0	1	0	0	0	187	1116	39	1	788	1	ACSM5	16	20435240	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1199132	20435240	69919513	381	115770											
ZNF423	23090	broad.mit.edu	37	chr16	49672667	49672667	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtatggcaggcccgtgccCccttcctcctcgccgaggcc	13	18	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49672667	A	A	49672667	2	1	128	1	0	0	0	0	0	0	0	1	18025	610	22	2		2	ZNF423	16	49672667	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	29237427	49672667	40682086	382	115771											
TOX3	27324	broad.mit.edu	37	chr16	52502441	52502441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactggcagcgaagaacgCattgttcgcctcagccatat	9	13	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52502441	A	A	52502441	3	1	128	1	0	0	0	0	1	0	0	0	16503	710	25	3	1621	3	TOX3	16	52502441	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	2829774	52502441	37852312	383	115772											
SLC6A2	6530	broad.mit.edu	37	chr16	55729083	55729083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagccactgaaggggggatGgcctttgaggctggggccag	20	8	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55729083	T	T	55729083	1	4	128	0	1	0	0	0	0	0	0	0	14797	1363	47	2		2	SLC6A2	16	55729083	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3226642	55729083	34625670	384	115773											
DUS2L	54920	broad.mit.edu	37	chr16	68109324	68109324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgcccagcaggccagGctctcagccaagacttcaga	11	14	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68109324	T	T	68109324	3	4	128	1	0	0	0	0	1	0	0	0	4846	1194	42	3	1045	3	DUS2L	16	68109324	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	12380241	68109324	22245429	385	115774											
VAC14	55697	broad.mit.edu	37	chr16	70816778	70816778	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctctgtgagacccagcactCcacctctcccagggcccact	7	20	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70816778	G	G	70816778	1	3	128	0	1	0	0	0	0	0	0	0	17238	870	30	4		4	VAC14	16	70816778	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2707454	70816778	19537975	386	115775											
FANCA	2175	broad.mit.edu	37	chr16	89858871	89858871	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcaggtataataccacatCcactcaccctgcggtacagt	7	13	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89858871	A	A	89858871	1	1	128	0	1	0	0	0	0	0	0	0	5719	870	30	3		3	FANCA	16	89858871	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	19042093	89858871	495882	387	115776											
ABR	29	broad.mit.edu	37	chr17	1003898	1003898	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcaacagggcttccagctgGttaatgtagatctcttcgct	10	10	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1003898	C	C	1003898	3	2	128	1	0	0	0	0	1	0	0	0	99	1252	44	4	2339	4	ABR	17	1003898	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08		1003898	80191312	388	115777											
PITPNM3	83394	broad.mit.edu	37	chr17	6371812	6371812	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgtcaggaggccgcagacCccgggacctgcattcctgtc	12	16	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6371812	G	G	6371812	1	3	128	0	1	0	0	0	0	0	0	0	12047	638	22	4		4	PITPNM3	17	6371812	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5367914	6371812	74823398	389	115778											
CNTROB	116840	broad.mit.edu	37	chr17	7850813	7850813	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccctttcttctgagtattAggtgagttgatttgtggaga	12	6	2	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7850813	T	T	7850813	1	4	128	0	1	0	0	0	0	0	0	0	3683	435	15	5		5	CNTROB	17	7850813	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	1479001	7850813	73344397	390	115779											
ALOX15B	247	broad.mit.edu	37	chr17	7950422	7950422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtccctggagagccgagGgctggtcggggacgtgggaa	20	10	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7950422	T	T	7950422	1	4	128	0	1	0	0	0	0	0	0	0	539	1247	43	2		2	ALOX15B	17	7950422	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	99609	7950422	73244788	391	115780											
PIK3R5	23533	broad.mit.edu	37	chr17	8794155	8794155	+	Frame_Shift_Del	DEL	C	-	-													aggcactgtgaggcgagtgtCcgggcgtactcagcttattg							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8794155	-	-	8794155	7	5	128	1	0	1	0	1	0	0	0	0	12017	855	30	0	2137	0	PIK3R5	17	8794155	Frame_Shift_Del	DEL	C	TCGA-44-6776-01A-11D-1855-08	843733	8794155	72401055	392	115781											
RCVRN	5957	broad.mit.edu	37	chr17	9804303	9804303	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaatgaaggaaaaggaattCaccatcatcattctttccaa	6	9	4	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9804303	A	A	9804303	1	1	128	0	1	0	0	0	0	0	0	0	13294	841	29	3		3	RCVRN	17	9804303	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1010148	9804303	71390907	393	115782											
ZNF286B	729288	broad.mit.edu	37	chr17	18584165	18584165	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacgacaagaaagcagtaatGatgagacctaggcttaatgt	10	6	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18584165	A	A	18584165	1	1	128	0	1	0	0	0	0	0	0	0	17950	1305	45	4		4	ZNF286B	17	18584165	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8779862	18584165	62611045	394	115783											
FBXL20	84961	broad.mit.edu	37	chr17	37441718	37441718	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattacttgacatgcttattAtaagaaatttacctcagagc	6	7	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37441718	G	G	37441718	1	3	128	0	1	0	0	0	0	0	0	0	5774	464	16	5		5	FBXL20	17	37441718	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	18857553	37441718	43753492	395	115784											
KRT37	8688	broad.mit.edu	37	chr17	39577329	39577329	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaggctgggcctgccacCaacaaggcacacagaccaga	12	13	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39577329	T	T	39577329	1	4	128	0	1	0	0	0	0	0	0	0	8545	609	21	4		4	KRT37	17	39577329	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2135611	39577329	41617881	396	115785											
CNTNAP1	8506	broad.mit.edu	37	chr17	40840012	40840012	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgctgctggtgagggcgtttCgggggaggcacaagaagaga	19	7	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40840012	T	T	40840012	1	4	128	0	1	0	0	0	0	0	0	0	3678	899	31	4		4	CNTNAP1	17	40840012	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1262683	40840012	40355198	397	115786											
GPATCH8	23131	broad.mit.edu	37	chr17	42483385	42483385	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggatcttgaagagacatttCgagcaaactctctctgcttc	9	10	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42483385	T	T	42483385	3	4	128	1	0	0	0	0	1	0	0	0	6659	884	31	4	3989	4	GPATCH8	17	42483385	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1643373	42483385	38711825	398	115787											
HOXB1	3211	broad.mit.edu	37	chr17	46606822	46606822	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatccccaggccagtgaagCccaggcctggggttggggag	18	11	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46606822	G	G	46606822	1	3	128	0	1	0	0	0	0	0	0	0	7366	754	26	4		4	HOXB1	17	46606822	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	4123437	46606822	34588388	399	115788											
HOXB1	3211	broad.mit.edu	37	chr17	46606839	46606839	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccaggcctggggttggGgagagcctgggatagggctg	20	8	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46606839	T	T	46606839	1	4	128	0	1	0	0	0	0	0	0	0	7366	1247	43	2		2	HOXB1	17	46606839	3'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	17	46606839	34588371	400	115789											
TEX14	56155	broad.mit.edu	37	chr17	56738951	56738951	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcaggaactcgtcttcagCagctgccatcttgggaaggc	13	12	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56738951	T	T	56738951	1	4	128	0	1	0	0	0	0	0	0	0	15900	725	25	4		4	TEX14	17	56738951	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	10132112	56738951	24456259	401	115790											
MRC2	9902	broad.mit.edu	37	chr17	60767808	60767808	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcgtgctctcacatgtgGagaccatacatgacactata	7	13	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60767808	T	T	60767808	1	4	128	0	1	0	0	0	0	0	0	0	9852	1189	41	3		3	MRC2	17	60767808	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	4028857	60767808	20427402	402	115791											
MARCH10	162333	broad.mit.edu	37	chr17	60802398	60802398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggagggggttgcttgGggaacccccggctatctgac	15	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60802398	T	T	60802398	3	4	128	1	0	0	0	0	1	0	0	0	9391	1232	43	2	441	2	MARCH10	17	60802398	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	34590	60802398	20392812	403	115792											
CACNG5	27091	broad.mit.edu	37	chr17	64876776	64876776	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catccgtccccaccggacgaTactggcctttgtctctggca	9	16	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64876776	G	G	64876776	3	3	128	1	0	0	0	0	1	0	0	0	2586	1406	49	5	396	5	CACNG5	17	64876776	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	4074378	64876776	16318434	404	115793											
RHBDF2	79651	broad.mit.edu	37	chr17	74473847	74473847	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccggcaccgctgtccggtGgcatccagcaccgagcgccc	12	19	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74473847	A	A	74473847	2	1	128	1	0	0	0	0	0	0	0	1	13429	1335	47	4		4	RHBDF2	17	74473847	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	9597071	74473847	6721363	405	115794											
POTEC	388468	broad.mit.edu	37	chr18	14542880	14542880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctgagcgtcttcataaagGagttgtcatggtctccagaa	10	9	4	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14542880	T	T	14542880	3	4	128	1	0	0	0	0	1	0	0	0	12358	1174	41	3	1406	3	POTEC	18	14542880	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08		14542880	63534368	406	115795											
ANKRD30B	374860	broad.mit.edu	37	chr18	14784490	14784490	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaatgcaaaagactgttcCaaataaagcctttgaattga	7	6	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14784490	G	G	14784490	3	3	128	1	0	0	0	0	1	0	0	0	659	594	21	4	1682	4	ANKRD30B	18	14784490	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	241610	14784490	63292758	407	115796											
PSMA8	143471	broad.mit.edu	37	chr18	23738319	23738319	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcattaaatattgatattGgtaaaatgtaactattcagc	6	4	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23738319	A	A	23738319	1	1	128	0	1	0	0	0	0	0	0	0	12779	1363	47	4		4	PSMA8	18	23738319	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	8953829	23738319	54338929	408	115797											
DSG4	147409	broad.mit.edu	37	chr18	28986162	28986162	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatggtgcagttatatgccTgtgattgcgatgacaaccac	10	8	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28986162	A	A	28986162	3	1	128	1	0	0	0	0	1	0	0	0	4819	1580	55	5	1805	5	DSG4	18	28986162	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	5247843	28986162	49091086	409	115798											
C18orf34	374864	broad.mit.edu	37	chr18	30804919	30804919	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgccagcaaagattttaAataaatcattcagttattaa	4	6	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30804919	G	G	30804919	1	3	128	0	1	0	0	0	0	0	0	0	1920	29	1	5		5	C18orf34	18	30804919	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	1818757	30804919	47272329	410	115799											
DTNA	1837	broad.mit.edu	37	chr18	32400802	32400802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattaagcaagtccctgagCtgtgcttccagccgtgaacc	10	13	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32400802	A	A	32400802	3	1	128	1	0	0	0	0	1	0	0	0	4828	796	28	3	954	3	DTNA	18	32400802	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1595883	32400802	45676446	411	115800											
MYO5B	4645	broad.mit.edu	37	chr18	47463534	47463534	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgtgatggcttccctctCaccctgccgccatccttcat	7	17	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47463534	A	A	47463534	1	1	128	0	1	0	0	0	0	0	0	0	10173	841	29	3		3	MYO5B	18	47463534	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	15062732	47463534	30613714	412	115801											
MYO5B	4645	broad.mit.edu	37	chr18	47566513	47566513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagatgccccccacttacCacagtaagtgtagatatggt	8	11	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47566513	A	A	47566513	3	1	128	1	0	0	0	0	1	0	0	0	10173	608	21	2	5388	2	MYO5B	18	47566513	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	102979	47566513	30510735	413	115802											
WDR7	23335	broad.mit.edu	37	chr18	54339910	54339910	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtagaactgcaagtgaGtatgtgaaatgcctattata	9	5	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54339910	C	C	54339910	1	2	128	0	1	0	0	0	0	0	0	0	17447	1044	36	4		4	WDR7	18	54339910	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	6773397	54339910	23737338	414	115803											
CPLX4	339302	broad.mit.edu	37	chr18	56963966	56963966	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctgctccgctgtctgcttGatttcagtgaaggtggcctg	12	10	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56963966	T	T	56963966	2	4	128	1	0	0	0	0	0	0	0	1	3839	1280	45	3		3	CPLX4	18	56963966	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	2624056	56963966	21113282	415	115804											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60028842	60028842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgaggtttgatttaccGggatttgtttttcaactgcg	10	6	2	2	rs76477458	by1000genomes	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60028842	T	T	60028842	1	4	128	0	1	0	0	0	0	0	0	0	16407	1131	39	1		1	TNFRSF11A	18	60028842	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3064876	60028842	18048406	416	115805											
SERPINB4	6318	broad.mit.edu	37	chr18	61310721	61310721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgatgtgatgctgatagGggaatagaagatgttgttct	14	3	1	5			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61310721	T	T	61310721	3	4	128	1	0	0	0	0	1	0	0	0	14216	1232	43	2	1109	2	SERPINB4	18	61310721	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1281879	61310721	16766527	417	115806											
STK11	6794	broad.mit.edu	37	chr19	1220640	1220640	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagggctccccggctttcCagccgcccgagattgccaac	11	18	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220640	T	T	1220640	4	4	128	1	0	0	0	0	0	1	0	0	15405	595	21	4	676	4	STK11	19	1220640	Nonsense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08		1220640	57908343	418	115807											
MUM1	84939	broad.mit.edu	37	chr19	1372987	1372987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaacctggtgacccagGctccctgcggccttcttaac	11	15	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1372987	T	T	1372987	1	4	128	0	1	0	0	0	0	0	0	0	10079	1218	42	3		3	MUM1	19	1372987	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	152347	1372987	57755996	419	115808											
MUC16	94025	broad.mit.edu	37	chr19	9091467	9091467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgcttgtagcagggtaGttcctagagggagttccatt	12	8	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9091467	T	T	9091467	3	4	128	1	0	0	0	0	1	0	0	0	10067	1020	36	3	43511	3	MUC16	19	9091467	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	7718480	9091467	50037516	420	115809											
KEAP1	9817	broad.mit.edu	37	chr19	10610246	10610246	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgacagcaccgttcatgAcgtggaggacacacttctcg	10	12	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10610246	G	G	10610246	3	3	128	1	0	0	0	0	1	0	0	0	8211	275	10	5	1430	5	KEAP1	19	10610246	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	1518779	10610246	48518737	421	115810											
SLC25A42	284439	broad.mit.edu	37	chr19	19215725	19215725	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttttgttttttccagtgtCttcaaaaagattttctgcca	6	8	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19215725	T	T	19215725	3	4	128	1	0	0	0	0	1	0	0	0	14621	913	32	4	201	4	SLC25A42	19	19215725	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	8605479	19215725	39913258	422	115811											
ZNF493	284443	broad.mit.edu	37	chr19	21608424	21608424	+	3'UTR	DEL	G	-	-													cctacaaatgtgaaaaatgtGgcaaaccttttaaccaatcc							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21608424	-	-	21608424	6	5	128	0	1	1	0	1	0	0	0	0	18071	1363	47	0		0	ZNF493	19	21608424	3'UTR	DEL	G	TCGA-44-6776-01A-11D-1855-08	2392699	21608424	37520559	423	115812											
ZNF536	9745	broad.mit.edu	37	chr19	30934361	30934361	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaattccttagcatgatTatgtgtaggtaaggcatgaa	10	5	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30934361	C	C	30934361	1	2	128	0	1	0	0	0	0	0	0	0	18101	1769	61	5		5	ZNF536	19	30934361	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	9325937	30934361	28194622	424	115813											
CHST8	64377	broad.mit.edu	37	chr19	34263296	34263296	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgaggtgcccaaggccggCtgctccaattggaagcgggt	16	11	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34263296	A	A	34263296	2	1	128	1	0	0	0	0	0	0	0	1	3441	784	28	3		3	CHST8	19	34263296	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	3328935	34263296	24865687	425	115814											
KIAA0355	9710	broad.mit.edu	37	chr19	34818810	34818810	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagctctggggacctatggcGctgctcctgcagtctagtgt	13	11	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34818810	C	C	34818810	1	2	128	0	1	0	0	0	0	0	0	0	8240	1102	38	4		4	KIAA0355	19	34818810	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	555514	34818810	24310173	426	115815											
FXYD3	5349	broad.mit.edu	37	chr19	35614273	35614274	+	Intron	DEL	TG	-	-													ggtgtgtgtgtgtgtgtgtaTgtgtgtgtttgcacactgga					rs113577293	by1000genomes	TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35614274	-	-	35614273	6	5	128	0	1	1	0	1	0	0	0	0	6179	1479	51	0		0	FXYD3	19	35614273	Intron	DEL	TG	TCGA-44-6776-01A-11D-1855-08	795463	35614273	23514710	427	115816											
GAPDHS	26330	broad.mit.edu	37	chr19	36034719	36034719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggcatccttgcctacaCcgaggatgaggtaggggctg	16	10	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36034719	A	A	36034719	3	1	128	1	0	0	0	0	1	0	0	0	6299	507	18	3	1080	3	GAPDHS	19	36034719	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	420446	36034719	23094264	428	115817											
NFKBID	84807	broad.mit.edu	37	chr19	36387872	36387872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccaaagccagcatgtgaGctcgggccacctccagcgat	11	16	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36387872	A	A	36387872	3	1	128	1	0	0	0	0	1	0	0	0	10474	971	34	4	878	4	NFKBID	19	36387872	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	353153	36387872	22741111	429	115818											
WDR62	284403	broad.mit.edu	37	chr19	36581184	36581184	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taactcagtggataccccagGacaacctcagcttgagatgg	10	11	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36581184	T	T	36581184	1	4	128	0	1	0	0	0	0	0	0	0	17440	1189	41	3		3	WDR62	19	36581184	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	193312	36581184	22547799	430	115819											
RYR1	6261	broad.mit.edu	37	chr19	38942303	38942303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgagattctgcagagcagGgaggagggggcaagtgcaga	19	5	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38942303	T	T	38942303	1	4	128	0	1	0	0	0	0	0	0	0	13879	1247	43	2		2	RYR1	19	38942303	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2361119	38942303	20186680	431	115820											
PAK4	10298	broad.mit.edu	37	chr19	39669327	39669327	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcccgggagatgctccGcgtggcaccaccctccttgc	11	19	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39669327	T	T	39669327	1	4	128	0	1	0	0	0	0	0	0	0	11497	1102	38	3		3	PAK4	19	39669327	3'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	727024	39669327	19459656	432	115821											
FBL	2091	broad.mit.edu	37	chr19	40337037	40337037	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagcgcaggcgcgcggcgAcgtgcgctgcgtgacgccac	17	14	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40337037	T	T	40337037	1	4	128	0	1	0	0	0	0	0	0	0	5753	290	10	5		5	FBL	19	40337037	5'UTR	SNP	A	TCGA-44-6776-01A-11D-1855-08	667710	40337037	18791946	433	115822											
FCGBP	8857	broad.mit.edu	37	chr19	40433188	40433188	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatagccttcgtctgtgccaCtaccagggccacgccctcac	9	17	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40433188	T	T	40433188	3	4	128	1	0	0	0	0	1	0	0	0	5835	565	20	4	15276	4	FCGBP	19	40433188	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	96151	40433188	18695795	434	115823											
SPTBN4	57731	broad.mit.edu	37	chr19	41008664	41008664	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcagagtctgagtgccTcctcccatctcctgcaggca	10	15	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41008664	A	A	41008664	1	1	128	0	1	0	0	0	0	0	0	0	15239	1566	54	5		5	SPTBN4	19	41008664	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	575476	41008664	18120319	435	115824											
SNRPA	6626	broad.mit.edu	37	chr19	41263354	41263354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttcaaggaggtcagcaGcgccaccaacgccctgcgct	10	16	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41263354	T	T	41263354	3	4	128	1	0	0	0	0	1	0	0	0	14973	971	34	3	197	3	SNRPA	19	41263354	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	254690	41263354	17865629	436	115825											
BCKDHA	593	broad.mit.edu	37	chr19	41917064	41917064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttgggactctggaggAgaagtgtgagagcagtcctg	15	7	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41917064	T	T	41917064	1	4	128	0	1	0	0	0	0	0	0	0	1364	319	11	5		5	BCKDHA	19	41917064	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	653710	41917064	17211919	437	115826											
PSG4	5672	broad.mit.edu	37	chr19	43698997	43698997	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaaggctgtgcctacctaGgttttcccagggcagggagt	14	9	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43698997	A	A	43698997	1	1	128	0	1	0	0	0	0	0	0	0	12763	1015	35	4		4	PSG4	19	43698997	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1781933	43698997	15429986	438	115827											
C19orf61	56006	broad.mit.edu	37	chr19	44251904	44251904	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggctgcagggggtggtGgggcggtgccctcaggggta	23	8	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44251904	A	A	44251904	3	1	128	1	0	0	0	0	1	0	0	0	1962	1348	47	4	1235	4	C19orf61	19	44251904	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	552907	44251904	14877079	439	115828											
TEAD2	8463	broad.mit.edu	37	chr19	49844710	49844710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accacctgccaggaaggccaGgacaagggacttatgcttag	12	11	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49844710	A	A	49844710	1	1	128	0	1	0	0	0	0	0	0	0	15861	1015	35	4		4	TEAD2	19	49844710	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	5592806	49844710	9284273	440	115829											
VRK3	51231	broad.mit.edu	37	chr19	50482553	50482553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaggcatcccccaaccCcgatcctgggggtctccacc	10	18	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50482553	A	A	50482553	1	1	128	0	1	0	0	0	0	0	0	0	17348	638	22	2		2	VRK3	19	50482553	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	637843	50482553	8646430	441	115830											
MYBPC2	4606	broad.mit.edu	37	chr19	50958926	50958926	+	Intron	DEL	G	-	-													gtgaccctggcagggctggtGggggtggtggctagcacagg							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50958926	-	-	50958926	6	5	128	0	1	1	0	1	0	0	0	0	10106	1363	47	0		0	MYBPC2	19	50958926	Intron	DEL	G	TCGA-44-6776-01A-11D-1855-08	476373	50958926	8170057	442	115831											
LRRC4B	94030	broad.mit.edu	37	chr19	51021872	51021872	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggtccgtgggcggctccacGatgacgggcgcatagcaggt	17	11	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51021872	C	C	51021872	3	2	128	1	0	0	0	0	1	0	0	0	9094	1048	37	4	1047	4	LRRC4B	19	51021872	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	62946	51021872	8107111	443	115832											
SIGLEC9	27180	broad.mit.edu	37	chr19	51630545	51630545	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggtctacctgaacgtctCcctgcagagtgagtgcacca	11	13	2	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51630545	A	A	51630545	3	1	128	1	0	0	0	0	1	0	0	0	14428	855	30	3	1021	3	SIGLEC9	19	51630545	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	608673	51630545	7498438	444	115833											
CACNG8	59283	broad.mit.edu	37	chr19	54483022	54483022	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agagagaatcacagaactgtCgggaggcgccgcgagatggg	17	8	1	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54483022	G	G	54483022	1	3	128	0	1	0	0	0	0	0	0	0	2589	899	31	4		4	CACNG8	19	54483022	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2852477	54483022	4645961	445	115834											
LILRA2	11027	broad.mit.edu	37	chr19	55086241	55086241	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctctgcccagccctgtGgtgaccttaggagggaacgt	13	12	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55086241	A	A	55086241	2	1	128	1	0	0	0	0	0	0	0	1	8857	1335	47	4		4	LILRA2	19	55086241	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	603219	55086241	4042742	446	115835											
LILRB1	10859	broad.mit.edu	37	chr19	55144405	55144405	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagggtcccagagggagacCtggggaggtgtcagctcaga	18	8	2	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55144405	T	T	55144405	1	4	128	0	1	0	0	0	0	0	0	0	8862	696	24	4		4	LILRB1	19	55144405	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	58164	55144405	3984578	447	115836											
NLRP13	126204	broad.mit.edu	37	chr19	56421916	56421916	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcttcttgagctgctggcGtctcacacttacgtcagttt	8	11	4	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56421916	A	A	56421916	1	1	128	0	1	0	0	0	0	0	0	0	10570	1160	40	4		4	NLRP13	19	56421916	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1277511	56421916	2707067	448	115837											
NLRP13	126204	broad.mit.edu	37	chr19	56423822	56423822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaaataggcatacagaCtggtggtagtctgagtgatt	12	4	1	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56423822	A	A	56423822	3	1	128	1	0	0	0	0	1	0	0	0	10570	565	20	3	1796	3	NLRP13	19	56423822	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	1906	56423822	2705161	449	115838											
PEG3	5178	broad.mit.edu	37	chr19	57326123	57326123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgaagccttgtccacaCaaaaggcatcgaatggccga	10	10	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57326123	A	A	57326123	3	1	128	1	0	0	0	0	1	0	0	0	11814	477	17	3	1083	3	PEG3	19	57326123	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	902301	57326123	1802860	450	115839											
SDCBP2	27111	broad.mit.edu	37	chr20	1294131	1294131	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctggccgggcccggggccCgagaccgctgtctgcagaca	15	15	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1294131	A	A	1294131	2	1	128	1	0	0	0	0	0	0	0	1	14069	639	23	1		1	SDCBP2	20	1294131	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08		1294131	61731389	451	115840											
SIRPD	128646	broad.mit.edu	37	chr20	1538104	1538104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtcttctgagttctgcCtgttctgggataagatggag	13	6	4	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1538104	A	A	1538104	1	1	128	0	1	0	0	0	0	0	0	0	14448	696	24	2		2	SIRPD	20	1538104	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	243973	1538104	61487416	452	115841											
PAK7	57144	broad.mit.edu	37	chr20	9546928	9546928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgactgcttgaggaatagCccgatttgctttgactttga	12	7	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9546928	A	A	9546928	3	1	128	1	0	0	0	0	1	0	0	0	11499	739	26	3	1089	3	PAK7	20	9546928	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	8008824	9546928	53478592	453	115842											
BFSP1	631	broad.mit.edu	37	chr20	17492544	17492544	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgccctcacagtccaaccTgtgagcccttccctgggagt	10	17	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17492544	A	A	17492544	1	1	128	0	1	0	0	0	0	0	0	0	1421	1595	55	5		5	BFSP1	20	17492544	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	7945616	17492544	45532976	454	115843											
C20orf26	26074	broad.mit.edu	37	chr20	20168823	20168823	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcagggggcagtggaggtaGagttagaagatgggagcaag	21	3	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20168823	T	T	20168823	1	4	128	0	1	0	0	0	0	0	0	0	2128	957	33	3		3	C20orf26	20	20168823	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2676279	20168823	42856697	455	115844											
XRN2	22803	broad.mit.edu	37	chr20	21335384	21335384	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgataagttggaatttgggtGatcctggtagcaggggtggt	17	3	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21335384	T	T	21335384	1	4	128	0	1	0	0	0	0	0	0	0	17587	1305	45	3		3	XRN2	20	21335384	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1166561	21335384	41690136	456	115845											
FOXS1	2307	broad.mit.edu	37	chr20	30433325	30433325	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtgggggcgccaggcccGggcagaggctgctgctgcat	19	11	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30433325	A	A	30433325	2	1	128	1	0	0	0	0	0	0	0	1	6095	1103	39	4		4	FOXS1	20	30433325	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	9097941	30433325	32592195	457	115846											
CHD6	84181	broad.mit.edu	37	chr20	40050551	40050551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatgcttcccacactccCaccagactgggaggtagagg	11	13	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40050551	A	A	40050551	3	1	128	1	0	0	0	0	1	0	0	0	3360	595	21	2	3451	2	CHD6	20	40050551	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	9617226	40050551	22974969	458	115847											
CHD6	84181	broad.mit.edu	37	chr20	40052343	40052343	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttctctcctagtccacctTgagatttaatcagaaaggaa	7	9	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40052343	C	C	40052343	1	2	128	0	1	0	0	0	0	0	0	0	3360	1827	63	5		5	CHD6	20	40052343	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	1792	40052343	22973177	459	115848											
ZSWIM3	140831	broad.mit.edu	37	chr20	44505453	44505453	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acttgctcctaaggtacaacGagagactagatagactattt	8	8	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44505453	A	A	44505453	3	1	128	1	0	0	0	0	1	0	0	0	18371	1059	37	4	262	4	ZSWIM3	20	44505453	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	4453110	44505453	18520067	460	115849											
PREX1	57580	broad.mit.edu	37	chr20	47276591	47276591	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatccctgaactcgctctTctccagcactgcagatccac	5	18	3	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47276591	G	G	47276591	3	3	128	1	0	0	0	0	1	0	0	0	12582	1792	62	5	3332	5	PREX1	20	47276591	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	2771138	47276591	15748929	461	115850											
GCNT7	140687	broad.mit.edu	37	chr20	55091859	55091859	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaacatcaaaagccttcttCagagtgactgtctgtctcat	8	10	5	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55091859	T	T	55091859	1	4	128	0	1	0	0	0	0	0	0	0	6366	841	29	4		4	GCNT7	20	55091859	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	7815268	55091859	7933661	462	115851											
SLCO4A1	28231	broad.mit.edu	37	chr20	61297622	61297622	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccatgcaggcaggaattgatCcctctatgcctcagtttccc	8	14	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61297622	G	G	61297622	1	3	128	0	1	0	0	0	0	0	0	0	14843	870	30	4		4	SLCO4A1	20	61297622	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6205763	61297622	1727898	463	115852											
SLC17A9	63910	broad.mit.edu	37	chr20	61597059	61597059	+	Frame_Shift_Del	DEL	T	-	-													tgcatcagcctccatcggccTccagaccttcaaccacaggt							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61597059	-	-	61597059	7	5	128	1	0	1	0	1	0	0	0	0	14537	1551	54	0	1081	0	SLC17A9	20	61597059	Frame_Shift_Del	DEL	T	TCGA-44-6776-01A-11D-1855-08	299437	61597059	1428461	464	115853											
BAGE2	85319	broad.mit.edu	37	chr21	11039319	11039319	+	3'UTR	SNP	C	A	A													ttcaatgttttctgtcacttCcattttatcttcaatttgat							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039319	A	A	11039319	1	1	128	0	1	0	0	0	0	0	0	0	1297	870	30	3		3	BAGE2	21	11039319	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08		11039319	37090576	465	115854	504	2									
BAGE2	85319	broad.mit.edu	37	chr21	11039321	11039321	+	3'UTR	SNP	A	C	C													caatgttttctgtcacttccAttttatcttcaatttgatct							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11039321	C	C	11039321	1	2	128	0	1	0	0	0	0	0	0	0	1297	232	8	5		5	BAGE2	21	11039321	3'UTR	SNP	A	TCGA-44-6776-01A-11D-1855-08	2	11039321	37090574	466	115855	504	2									
CHODL	140578	broad.mit.edu	37	chr21	19638184	19638184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagtctttcataaataaCtgtctgagatatctcccttt	8	8	4	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19638184	A	A	19638184	1	1	128	0	1	0	0	0	0	0	0	0	3395	580	20	3		3	CHODL	21	19638184	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	8598863	19638184	28491711	467	115856											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253450	32253450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagactcctcccactggttGgcagacagtagagatgccgc	12	12	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32253450	T	T	32253450	3	4	128	1	0	0	0	0	1	0	0	0	8588	1357	47	2	101	2	KRTAP11-1	21	32253450	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	12615266	32253450	15876445	468	115857											
ABCG1	9619	broad.mit.edu	37	chr21	43639333	43639338	+	5'UTR	DEL	CCGCCG	-	-													ccgcagctcaagcctcgtccCcgccgccgccgccgccgccg							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43639338	-	-	43639333	6	5	128	0	1	1	0	1	0	0	0	0	68	638	22	0		0	ABCG1	21	43639333	5'UTR	DEL	CCGCCG	TCGA-44-6776-01A-11D-1855-08	11385883	43639333	4490562	469	115858											
PWP2	5822	broad.mit.edu	37	chr21	45527338	45527338	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagcgcgggcggcgggcggtCtgttggatcggcgcggctct	21	11	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45527338	T	T	45527338	1	4	128	0	1	0	0	0	0	0	0	0	12952	928	32	4		4	PWP2	21	45527338	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	1888005	45527338	2602557	470	115859											
MCM3AP	8888	broad.mit.edu	37	chr21	47690549	47690549	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaattttcatgaagatagatCtgataaataatagatttcac	5	4	3	5			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47690549	G	G	47690549	1	3	128	0	1	0	0	0	0	0	0	0	9481	928	32	4		4	MCM3AP	21	47690549	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2163211	47690549	439346	471	115860											
IL17RA	23765	broad.mit.edu	37	chr22	17589773	17589773	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtaggggagctgtcggGggacaactacctgcggagcc	17	12	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17589773	T	T	17589773	3	4	128	1	0	0	0	0	1	0	0	0	7709	1232	43	2	1714	2	IL17RA	22	17589773	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08		17589773	33714793	472	115861											
CECR1	51816	broad.mit.edu	37	chr22	17688152	17688152	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagtccatagtcacgatGccaatgtcatggaggtgcaa	11	10	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17688152	A	A	17688152	2	1	128	1	0	0	0	0	0	0	0	1	3235	1306	46	4		4	CECR1	22	17688152	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	98379	17688152	33616414	473	115862											
PIWIL3	440822	broad.mit.edu	37	chr22	25144756	25144756	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attggctcaatatagaaagaAtgagcagtctgaaaaaagaa	9	4	2	5			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25144756	G	G	25144756	1	3	128	0	1	0	0	0	0	0	0	0	12054	116	4	5		5	PIWIL3	22	25144756	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	7456604	25144756	26159810	474	115863											
APOBEC3G	60489	broad.mit.edu	37	chr22	39479947	39479947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaacccagggacacccatGggcagaaggttctgggtggt	14	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39479947	A	A	39479947	1	1	128	0	1	0	0	0	0	0	0	0	796	1363	47	4		4	APOBEC3G	22	39479947	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	14335191	39479947	11824619	475	115864											
EFCAB6	64800	broad.mit.edu	37	chr22	43986047	43986047	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatggatatgtagttggttTtggattgatcagttttggtg	13	1	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43986047	G	G	43986047	3	3	128	1	0	0	0	0	1	0	0	0	4979	1841	64	5	1602	5	EFCAB6	22	43986047	Missense_Mutation	SNP	T	TCGA-44-6776-01A-11D-1855-08	4506100	43986047	7318519	476	115865											
SMC1B	27127	broad.mit.edu	37	chr22	45741301	45741301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtactaagggaagttgGcattgggtacactcctctcg	13	9	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45741301	T	T	45741301	1	4	128	0	1	0	0	0	0	0	0	0	14896	1218	42	3		3	SMC1B	22	45741301	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1755254	45741301	5563265	477	115866											
MOV10L1	54456	broad.mit.edu	37	chr22	50547205	50547205	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggtgacgtggtcaatgcAgtggtggtggagagcagcca	18	6	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50547205	T	T	50547205	2	4	128	1	0	0	0	0	0	0	0	1	9813	175	7	5		5	MOV10L1	22	50547205	Silent	SNP	A	TCGA-44-6776-01A-11D-1855-08	4805904	50547205	757361	478	115867											
IL3RA	3563	broad.mit.edu	37	chrX	1475018	1475018	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctccaaatgcataggagAagtaatttgaagtatctcca	8	8	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1475018	G	G	1475018	1	3	128	0	1	0	0	0	0	0	0	0	7765	261	9	5		5	IL3RA	23	1475018	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08		1475018	153795542	479	115868											
ASMTL	8623	broad.mit.edu	37	chrX	1547051	1547051	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtaagaggtgacaaggagGagaaaagttcctgggtctga	16	4	1	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1547051	A	A	1547051	1	1	128	0	1	0	0	0	0	0	0	0	1050	1189	41	4		4	ASMTL	23	1547051	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	72033	1547051	153723509	480	115869											
MXRA5	25878	broad.mit.edu	37	chrX	3248300	3248300	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagatttccttccaaatgGagtagcctcagagacgttaa	10	8	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3248300	T	T	3248300	2	4	128	1	0	0	0	0	0	0	0	1	10097	1161	41	3		3	MXRA5	23	3248300	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	1701249	3248300	152022260	481	115870											
SHROOM2	357	broad.mit.edu	37	chrX	9859207	9859207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttctgcagggagcgcaCtcctgactgcagaatgattt	11	11	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9859207	A	A	9859207	1	1	128	0	1	0	0	0	0	0	0	0	14407	580	20	3		3	SHROOM2	23	9859207	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6610907	9859207	145411353	482	115871											
WWC3	55841	broad.mit.edu	37	chrX	10093091	10093091	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtggcagcgagtgtctcctCgtgcacgtgctgcagctgaa	14	11	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10093091	A	A	10093091	2	1	128	1	0	0	0	0	0	0	0	1	17540	871	31	3		3	WWC3	23	10093091	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	233884	10093091	145177469	483	115872											
RBBP7	5931	broad.mit.edu	37	chrX	16871023	16871023	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacaaaggtaaaggcacaCggcacccagggatgacacac	10	12	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16871023	T	T	16871023	1	4	128	0	1	0	0	0	0	0	0	0	13212	551	19	4		4	RBBP7	23	16871023	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6777932	16871023	138399537	484	115873											
SCML1	6322	broad.mit.edu	37	chrX	17771520	17771520	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaaaattgaaaaaatcCttgtgcaaatttagattggg	8	4	0	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17771520	A	A	17771520	1	1	128	0	1	0	0	0	0	0	0	0	14022	696	24	2		2	SCML1	23	17771520	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	900497	17771520	137499040	485	115874											
MAP7D2	256714	broad.mit.edu	37	chrX	20060444	20060444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcaaaggatctttcaccCagaagatacacagagagtca	8	9	3	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20060444	A	A	20060444	1	1	128	0	1	0	0	0	0	0	0	0	9360	609	21	2		2	MAP7D2	23	20060444	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	2288924	20060444	135210116	486	115875											
RPS6KA3	6197	broad.mit.edu	37	chrX	20185604	20185604	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggataattcagctaatagcaGttattttccatttcaggcat	7	7	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20185604	A	A	20185604	1	1	128	0	1	0	0	0	0	0	0	0	13763	1044	36	4		4	RPS6KA3	23	20185604	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	125160	20185604	135084956	487	115876											
DMD	1756	broad.mit.edu	37	chrX	31645941	31645941	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggggaactgttgcagtaatCtatgagtttcttccaaagca	11	7	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31645941	G	G	31645941	3	3	128	1	0	0	0	0	1	0	0	0	4620	913	32	4	3239	4	DMD	23	31645941	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	11460337	31645941	123624619	488	115877											
FAM47C	442444	broad.mit.edu	37	chrX	37029325	37029325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacctcaagcctaagttgGggaaaaagctaagaagtgat	12	6	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37029325	T	T	37029325	3	4	128	1	0	0	0	0	1	0	0	0	5622	1232	43	2	2844	2	FAM47C	23	37029325	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	5383384	37029325	118241235	489	115878											
RPGR	6103	broad.mit.edu	37	chrX	38176772	38176772	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaaaggtagccaggctctGaagctattatacttccaaaa	7	8	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38176772	T	T	38176772	1	4	128	0	1	0	0	0	0	0	0	0	13659	1305	45	3		3	RPGR	23	38176772	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	1147447	38176772	117093788	490	115879											
OTC	5009	broad.mit.edu	37	chrX	38271301	38271301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctttgtgtggttccaaCttggtcattcatgcctttgg	10	8	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38271301	A	A	38271301	1	1	128	0	1	0	0	0	0	0	0	0	11395	580	20	3		3	OTC	23	38271301	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	94529	38271301	116999259	491	115880											
EFHC2	80258	broad.mit.edu	37	chrX	44120233	44120233	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctaaaagctctttcacatCtgcatcaggagtacaaacac	5	12	5	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44120233	T	T	44120233	1	4	128	0	1	0	0	0	0	0	0	0	4987	928	32	4		4	EFHC2	23	44120233	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5848932	44120233	111150327	492	115881											
ARAF	369	broad.mit.edu	37	chrX	47430233	47430233	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattccttgggcctcccagcCcctgaccccagatcacccct	6	20	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47430233	T	T	47430233	1	4	128	0	1	0	0	0	0	0	0	0	839	638	22	4		4	ARAF	23	47430233	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	3310000	47430233	107840327	493	115882											
SSX5	6758	broad.mit.edu	37	chrX	48054602	48054602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagagtgagaggctcccaaGgttccagatgtccccggaga	14	11	0	4			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48054602	T	T	48054602	1	4	128	0	1	0	0	0	0	0	0	0	15326	1015	35	2		2	SSX5	23	48054602	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	624369	48054602	107215958	494	115883											
SSX7	280658	broad.mit.edu	37	chrX	52673659	52673659	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtccgcagccatgccCatgttcgtgaaaggtcacca	13	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52673659	A	A	52673659	1	1	128	0	1	0	0	0	0	0	0	0	15327	609	21	2		2	SSX7	23	52673659	3'UTR	SNP	C	TCGA-44-6776-01A-11D-1855-08	4619057	52673659	102596901	495	115884											
TSR2	90121	broad.mit.edu	37	chrX	54471045	54471045	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaagagttgtctgtagggGttttttttttgaggattgca	12	3	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54471045	C	C	54471045	1	2	128	0	1	0	0	0	0	0	0	0	16790	1276	44	4		4	TSR2	23	54471045	3'UTR	SNP	G	TCGA-44-6776-01A-11D-1855-08	1797386	54471045	100799515	496	115885											
PAGE2B	389860	broad.mit.edu	37	chrX	55104034	55104034	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacacagaggtaaaattaCtgctactttaatatcatact	6	7	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55104034	T	T	55104034	1	4	128	0	1	0	0	0	0	0	0	0	11485	580	20	4		4	PAGE2B	23	55104034	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	632989	55104034	100166526	497	115886											
FAM104B	90736	broad.mit.edu	37	chrX	55172504	55172504	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtttaggttggaataaggAagtcctaattcatcatgttg	10	5	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55172504	G	G	55172504	1	3	128	0	1	0	0	0	0	0	0	0	5432	261	9	5		5	FAM104B	23	55172504	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	68470	55172504	100098056	498	115887											
UBQLN2	29978	broad.mit.edu	37	chrX	56591819	56591819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggccccataggccctataGtcccttttacccccataggc	7	16	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56591819	T	T	56591819	3	4	128	1	0	0	0	0	1	0	0	0	17023	1029	36	3	1515	3	UBQLN2	23	56591819	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1419315	56591819	98678741	499	115888											
SPIN4	139886	broad.mit.edu	37	chrX	62570685	62570685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacccccatcggaggcacgGttggaggagacatagctcag	13	12	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62570685	T	T	62570685	3	4	128	1	0	0	0	0	1	0	0	0	15174	1261	44	3	739	3	SPIN4	23	62570685	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	5978866	62570685	92699875	500	115889											
EDA	1896	broad.mit.edu	37	chrX	69255353	69255353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctgcctcctcaaggcccGgcagaagatcgccgtcaaga	11	15	3	3	rs61747506		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69255353	T	T	69255353	3	4	128	1	0	0	0	0	1	0	0	0	4943	1116	39	1	1236	1	EDA	23	69255353	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	6684668	69255353	86015207	501	115890											
KIF4A	24137	broad.mit.edu	37	chrX	69550032	69550032	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaggaggtaatagccatacTcttatgatagcctgtgtgag	11	7	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69550032	A	A	69550032	2	1	128	1	0	0	0	0	0	0	0	1	8373	1538	54	5		5	KIF4A	23	69550032	Silent	SNP	T	TCGA-44-6776-01A-11D-1855-08	294679	69550032	85720528	502	115891											
KIF4A	24137	broad.mit.edu	37	chrX	69637839	69637839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccacaaagtgtcggaaCcgccagcaaggcaaggtagg	13	12	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69637839	A	A	69637839	3	1	128	1	0	0	0	0	1	0	0	0	8373	506	18	3	3467	3	KIF4A	23	69637839	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	87807	69637839	85632721	503	115892											
DLG3	1741	broad.mit.edu	37	chrX	69670523	69670523	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaggatgtgaggcacgAggaagctgtggcctcactga	15	9	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69670523	T	T	69670523	3	4	128	1	0	0	0	0	1	0	0	0	4596	304	11	5	897	5	DLG3	23	69670523	Missense_Mutation	SNP	A	TCGA-44-6776-01A-11D-1855-08	32684	69670523	85600037	504	115893											
ZMYM3	9203	broad.mit.edu	37	chrX	70464286	70464286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactgctcatggagtcccggGagcagctttcggaaagcacc	13	12	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70464286	T	T	70464286	3	4	128	1	0	0	0	0	1	0	0	0	17827	1174	41	3	990	3	ZMYM3	23	70464286	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	793763	70464286	84806274	505	115894											
ATP7A	538	broad.mit.edu	37	chrX	77289241	77289241	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggacaataatattaaaaatGcatccctggttcaaattgat	6	6	1	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77289241	C	C	77289241	3	2	128	1	0	0	0	0	1	0	0	0	1194	1319	46	4	3495	4	ATP7A	23	77289241	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	6824955	77289241	77981319	506	115895											
DACH2	117154	broad.mit.edu	37	chrX	85559528	85559528	+	Intron	SNP	A	T	T													tatttcagtattccatggtcAtttcctcctgcagttcttcc							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85559528	T	T	85559528	1	4	128	0	1	0	0	0	0	0	0	0	4254	232	8	5		5	DACH2	23	85559528	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	8270287	85559528	69711032	507	115896	505	2									
DACH2	117154	broad.mit.edu	37	chrX	85559530	85559530	+	Intron	SNP	T	A	A													tttcagtattccatggtcatTtcctcctgcagttcttccct							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85559530	A	A	85559530	1	1	128	0	1	0	0	0	0	0	0	0	4254	1856	64	5		5	DACH2	23	85559530	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	2	85559530	69711030	508	115897	505	2									
PCDH11X	27328	broad.mit.edu	37	chrX	91715180	91715180	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtatgagacacagctggCgatgcgccagtctgtggaga	14	9	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91715180	T	T	91715180	1	4	128	0	1	0	0	0	0	0	0	0	11602	783	27	4		4	PCDH11X	23	91715180	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	6155650	91715180	63555380	509	115898											
PCDH19	57526	broad.mit.edu	37	chrX	99605775	99605775	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcgaactgccctacttagAaggaatttttcttctgggtc	8	9	2	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99605775	G	G	99605775	1	3	128	0	1	0	0	0	0	0	0	0	11608	261	9	5		5	PCDH19	23	99605775	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	7890595	99605775	55664785	510	115899											
NXF3	56000	broad.mit.edu	37	chrX	102337309	102337309	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacctgcaattatgcagaaGaaccacgtagacccaggaaa	8	11	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102337309	T	T	102337309	1	4	128	0	1	0	0	0	0	0	0	0	10880	957	33	3		3	NXF3	23	102337309	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	2731534	102337309	52933251	511	115900											
TCEAL5	340543	broad.mit.edu	37	chrX	102529326	102529326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcacctggctctccctcatCctctcgctttccctcgcatt	4	19	4	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102529326	A	A	102529326	3	1	128	1	0	0	0	0	1	0	0	0	15796	855	30	3	458	3	TCEAL5	23	102529326	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	192017	102529326	52741234	512	115901											
RAB9B	51209	broad.mit.edu	37	chrX	103080666	103080666	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgaacttttcccaactcCaccatcacccaagagaatga	5	14	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103080666	A	A	103080666	4	1	128	1	0	0	0	0	0	1	0	0	13067	603	21	2	560	2	RAB9B	23	103080666	Nonsense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	551340	103080666	52189894	513	115902											
TEX13A	56157	broad.mit.edu	37	chrX	104463890	104463890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcggaaggcagctgaggcGgaactggtgctgtgactgtt	17	7	0	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104463890	T	T	104463890	3	4	128	1	0	0	0	0	1	0	0	0	15898	1116	39	1	247	1	TEX13A	23	104463890	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	1383224	104463890	50806670	514	115903											
COL4A6	1288	broad.mit.edu	37	chrX	107437603	107437603	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtatctaagaaatgctcaTtagcagctttgtgtgttcaa	8	6	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107437603	C	C	107437603	1	2	128	0	1	0	0	0	0	0	0	0	3727	1508	52	5		5	COL4A6	23	107437603	Intron	SNP	T	TCGA-44-6776-01A-11D-1855-08	2973713	107437603	47832957	515	115904											
GUCY2F	2986	broad.mit.edu	37	chrX	108684589	108684589	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatatcttacctcataaatCgctatgttggagttttcata	6	7	3	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108684589	A	A	108684589	2	1	128	1	0	0	0	0	0	0	0	1	6963	871	31	3		3	GUCY2F	23	108684589	Silent	SNP	C	TCGA-44-6776-01A-11D-1855-08	1246986	108684589	46585971	516	115905											
LONRF3	79836	broad.mit.edu	37	chrX	118109401	118109401	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggctgggcagcagccgCcgccgccgctgcgagtcaac	17	16	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118109401	T	T	118109401	3	4	128	1	0	0	0	0	1	0	0	0	8983	739	26	4	660	4	LONRF3	23	118109401	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	9424812	118109401	37161159	517	115906											
THOC2	57187	broad.mit.edu	37	chrX	122840877	122840877	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctatatatttcctacgtctCagaattattataaacatcaa	2	8	3	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122840877	A	A	122840877	1	1	128	0	1	0	0	0	0	0	0	0	15988	841	29	3		3	THOC2	23	122840877	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	4731476	122840877	32429683	518	115907											
ODZ1	10178	broad.mit.edu	37	chrX	123556010	123556010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttctccactagctcataCcaatgtttgcaagtaacact	5	12	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123556010	A	A	123556010	1	1	128	0	1	0	0	0	0	0	0	0	10929	522	18	3		3	ODZ1	23	123556010	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	715133	123556010	31714550	519	115908											
BCORL1	63035	broad.mit.edu	37	chrX	129155221	129155221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggcgctgactccttcaCtctggaaaagtgagacttct	9	12	4	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129155221	A	A	129155221	1	1	128	0	1	0	0	0	0	0	0	0	1392	580	20	3		3	BCORL1	23	129155221	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	5599211	129155221	26115339	520	115909											
AIFM1	9131	broad.mit.edu	37	chrX	129265423	129265423	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccactgtccactgtctaggAcagatacccacaatatttga	7	12	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129265423	T	T	129265423	1	4	128	0	1	0	0	0	0	0	0	0	426	290	10	5		5	AIFM1	23	129265423	Intron	SNP	A	TCGA-44-6776-01A-11D-1855-08	110202	129265423	26005137	521	115910											
FHL1	2273	broad.mit.edu	37	chrX	135279254	135279254	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtctaggtgctgctcctGaacttggtctctgagccatg	12	11	2	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135279254	A	A	135279254	1	1	128	0	1	0	0	0	0	0	0	0	5935	1305	45	4		4	FHL1	23	135279254	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	6013831	135279254	19991306	522	115911											
HTATSF1	27336	broad.mit.edu	37	chrX	135585093	135585093	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataagaagaagctgtctatgCaacaaaagtttgtaattttt	7	4	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135585093	G	G	135585093	3	3	128	1	0	0	0	0	1	0	0	0	7503	711	25	4	745	4	HTATSF1	23	135585093	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	305839	135585093	19685467	523	115912											
GPR101	83550	broad.mit.edu	37	chrX	136112642	136112642	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgatgaagatcactttagCagctttgcactggtagcacc	10	9	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136112642	G	G	136112642	3	3	128	1	0	0	0	0	1	0	0	0	6687	710	25	4	337	4	GPR101	23	136112642	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	527549	136112642	19157918	524	115913											
SLITRK2	84631	broad.mit.edu	37	chrX	144903883	144903883	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccctgcacccgcttcttcCccctgcccccacctaaggtt	5	21	1	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144903883	T	T	144903883	1	4	128	0	1	0	0	0	0	0	0	0	14857	638	22	4		4	SLITRK2	23	144903883	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	8791241	144903883	10366677	525	115914											
HSFX2	100130086	broad.mit.edu	37	chrX	148770681	148770681	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcaaggaggggtaagctgGagtgggaatgcccaggacca	17	8	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148770681	C	C	148770681	1	2	128	0	1	0	0	0	0	0	0	0	7468	1189	41	4		4	HSFX2	23	148770681	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	3866798	148770681	6499879	526	115915											
GABRQ	55879	broad.mit.edu	37	chrX	151818269	151818269	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaacgccatccacatgacTgaggagctgcatatccctca	10	13	1	2			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151818269	A	A	151818269	2	1	128	1	0	0	0	0	0	0	0	1	6235	1567	55	5		5	GABRQ	23	151818269	Silent	SNP	T	TCGA-44-6776-01A-11D-1855-08	3047588	151818269	3452291	527	115916											
PNMA3	29944	broad.mit.edu	37	chrX	152226785	152226785	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgggacaagagccatcCcaagtccaaggccaagtagg	13	11	0	1			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152226785	T	T	152226785	3	4	128	1	0	0	0	0	1	0	0	0	12250	623	22	4	1375	4	PNMA3	23	152226785	Missense_Mutation	SNP	C	TCGA-44-6776-01A-11D-1855-08	408516	152226785	3043775	528	115917											
SLC6A8	6535	broad.mit.edu	37	chrX	152958581	152958581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctggcgccctggatgGcatcatttactatctcaagc	10	13	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152958581	T	T	152958581	3	4	128	1	0	0	0	0	1	0	0	0	14804	1203	42	3	881	3	SLC6A8	23	152958581	Missense_Mutation	SNP	G	TCGA-44-6776-01A-11D-1855-08	731796	152958581	2311979	529	115918											
BCAP31	10134	broad.mit.edu	37	chrX	152988533	152988533	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaattccagggtccaccagCtgcacacaccagtcccaggg	9	17	0	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152988533	G	G	152988533	1	3	128	0	1	0	0	0	0	0	0	0	1352	812	28	4		4	BCAP31	23	152988533	Intron	SNP	C	TCGA-44-6776-01A-11D-1855-08	29952	152988533	2282027	530	115919											
SRPK3	26576	broad.mit.edu	37	chrX	153048494	153048494	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatcttgctgtgtgtgggGgacgcttacatcaggcgcct	13	10	2	0			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153048494	A	A	153048494	2	1	128	1	0	0	0	0	0	0	0	1	15279	1219	43	4		4	SRPK3	23	153048494	Silent	SNP	G	TCGA-44-6776-01A-11D-1855-08	59961	153048494	2222066	531	115920											
L1CAM	3897	broad.mit.edu	37	chrX	153135618	153135620	+	In_Frame_Del	DEL	TTG	-	-													ctttcagcagctgcagggtcTtgttgtggttctggtaggtg							TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153135620	-	-	153135618	7	5	128	1	0	1	0	1	0	0	0	0	8660	1609	56	0	2973	0	L1CAM	23	153135618	In_Frame_Del	DEL	TTG	TCGA-44-6776-01A-11D-1855-08	87124	153135618	2134942	532	115921											
TKTL1	8277	broad.mit.edu	37	chrX	153539066	153539066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttgatgagggagattgtGggaagcgaatggtctggagc	19	3	1	3			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153539066	A	A	153539066	1	1	128	0	1	0	0	0	0	0	0	0	16058	1363	47	4		4	TKTL1	23	153539066	Intron	SNP	G	TCGA-44-6776-01A-11D-1855-08	403448	153539066	1731494	533	115922											
TTLL10	254173	broad.mit.edu	37	chr1	1115671	1115671	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagccatcgccccacagcAcccggccggggcccttcttc	11	19	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1115671	T	T	1115671	3	4	129	1	0	0	0	0	1	0	0	0	16849	159	6	5	467	5	TTLL10	1	1115671	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08		1115671	248134950	1	115923											
CDK11B	984	broad.mit.edu	37	chr1	1635608	1635608	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaacgacagatgggcggctGtgggtgggcctgggcgggtc	21	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1635608	A	A	1635608	1	1	129	0	1	0	0	0	0	0	0	0	3157	1392	48	4		4	CDK11B	1	1635608	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	519937	1635608	247615013	2	115924											
KIAA1751	85452	broad.mit.edu	37	chr1	1905589	1905589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctcacggtcagctgtccgGaaggcctcgagtcgcccctc	11	17	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1905589	T	T	1905589	3	4	129	1	0	0	0	0	1	0	0	0	8326	1165	41	3	1787	3	KIAA1751	1	1905589	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	269981	1905589	247345032	3	115925											
ENO1	2023	broad.mit.edu	37	chr1	8927929	8927929	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaaagcaaagaaatgggaaGagaccacaggctcatgtagc	12	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8927929	C	C	8927929	1	2	129	0	1	0	0	0	0	0	0	0	5163	957	33	4		4	ENO1	1	8927929	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7022340	8927929	240322692	4	115926											
C1orf127	148345	broad.mit.edu	37	chr1	11015007	11015007	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaaaggagaagggcctcagGaagagaaggggcgagacaga	17	7	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11015007	A	A	11015007	1	1	129	0	1	0	0	0	0	0	0	0	2014	1189	41	4		4	C1orf127	1	11015007	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2087078	11015007	238235614	5	115927											
PRAMEF11	440560	broad.mit.edu	37	chr1	12884706	12884706	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgtgtgaaacgatgggttCtgtgctccctttaggatgta	12	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12884706	G	G	12884706	1	3	129	0	1	0	0	0	0	0	0	0	12528	928	32	4		4	PRAMEF11	1	12884706	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	1869699	12884706	236365915	6	115928											
PRAMEF2	65122	broad.mit.edu	37	chr1	12918992	12918992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccactcttcagggaggCcttcagcaggagacacttcc	9	15	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12918992	A	A	12918992	3	1	129	1	0	0	0	0	1	0	0	0	12537	739	26	3	130	3	PRAMEF2	1	12918992	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	34286	12918992	236331629	7	115929											
EPHA2	1969	broad.mit.edu	37	chr1	16461352	16461352	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcccggctcctccacccctCagccttccatgcttccccct	4	23	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16461352	A	A	16461352	1	1	129	0	1	0	0	0	0	0	0	0	5209	841	29	3		3	EPHA2	1	16461352	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3542360	16461352	232789269	8	115930											
FBXO42	54455	broad.mit.edu	37	chr1	16578686	16578686	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtgacaccaaggtgttttCtatttttgtacaaatttctt	6	6	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16578686	G	G	16578686	1	3	129	0	1	0	0	0	0	0	0	0	5808	928	32	4		4	FBXO42	1	16578686	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	117334	16578686	232671935	9	115931											
ATP13A2	23400	broad.mit.edu	37	chr1	17322790	17322790	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgtagatggtgccgaGgagagctgtggggacagcga	19	6	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17322790	A	A	17322790	3	1	129	1	0	0	0	0	1	0	0	0	1128	1000	35	4	2530	4	ATP13A2	1	17322790	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	744104	17322790	231927831	10	115932											
PADI6	353238	broad.mit.edu	37	chr1	17699492	17699492	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccctcccccatgccagtcAtctcctaggctgagaaggtg	9	16	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17699492	G	G	17699492	1	3	129	0	1	0	0	0	0	0	0	0	11475	232	8	5		5	PADI6	1	17699492	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	376702	17699492	231551129	11	115933											
ACTL8	81569	broad.mit.edu	37	chr1	18152740	18152740	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagcatcccacgggccaTtgtggaatccgtggagtcct	12	14	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18152740	C	C	18152740	3	2	129	1	0	0	0	0	1	0	0	0	202	1493	52	5	833	5	ACTL8	1	18152740	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	453248	18152740	231097881	12	115934											
ASAP3	55616	broad.mit.edu	37	chr1	23759638	23759638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgactggcaagggcgggGgacagtcctcactctcgccc	13	13	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23759638	A	A	23759638	3	1	129	1	0	0	0	0	1	0	0	0	1016	1232	43	4	472	4	ASAP3	1	23759638	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5606898	23759638	225490983	13	115935											
ZNF683	257101	broad.mit.edu	37	chr1	26688417	26688417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggatgtgctgggtgaagcGactccggcagacactgcact	15	10	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26688417	T	T	26688417	3	4	129	1	0	0	0	0	1	0	0	0	18217	1058	37	3	278	3	ZNF683	1	26688417	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2928779	26688417	222562204	14	115936											
GPN2	54707	broad.mit.edu	37	chr1	27215499	27215499	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaggtccatcttggaaaGgaggttgatgtggggcagtt	16	4	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27215499	A	A	27215499	3	1	129	1	0	0	0	0	1	0	0	0	6683	1000	35	4	419	4	GPN2	1	27215499	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	527082	27215499	222035122	15	115937											
FABP3	2170	broad.mit.edu	37	chr1	31842275	31842275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctcatcgaactccaccCccaacttaaagctgatctct	4	15	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31842275	A	A	31842275	3	1	129	1	0	0	0	0	1	0	0	0	5404	623	22	2	210	2	FABP3	1	31842275	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4626776	31842275	217408346	16	115938											
CCDC28B	79140	broad.mit.edu	37	chr1	32670241	32670241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatcctttccaaggaaccCgtctatgtgtgtgtgttcct	9	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32670241	A	A	32670241	1	1	129	0	1	0	0	0	0	0	0	0	2830	667	23	1		1	CCDC28B	1	32670241	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	827966	32670241	216580380	17	115939											
CSMD2	114784	broad.mit.edu	37	chr1	34049270	34049270	+	Frame_Shift_Del	DEL	C	-	-													atctcaaactcatcatattgCttctcgctgaggaagtactc							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34049270	-	-	34049270	7	5	129	1	0	1	0	1	0	0	0	0	3979	796	28	0	3333	0	CSMD2	1	34049270	Frame_Shift_Del	DEL	C	TCGA-44-6777-01A-11D-1855-08	1379029	34049270	215201351	18	115940											
CSMD2	114784	broad.mit.edu	37	chr1	34092195	34092195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctcctgccgagataagGggcaaggaggagagaacagt	15	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34092195	T	T	34092195	1	4	129	0	1	0	0	0	0	0	0	0	3979	1247	43	2		2	CSMD2	1	34092195	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	42925	34092195	215158426	19	115941											
MACF1	23499	broad.mit.edu	37	chr1	39783000	39783000	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctgacaccagagcgaaatCtggatttggagcgctatcag	12	9	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39783000	T	T	39783000	2	4	129	1	0	0	0	0	0	0	0	1	9232	912	32	4		4	MACF1	1	39783000	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	5690805	39783000	209467621	20	115942											
MACF1	23499	broad.mit.edu	37	chr1	39917738	39917738	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcataaaagacacatgattAgaacctaccaagaaaattat	5	7	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39917738	G	G	39917738	1	3	129	0	1	0	0	0	0	0	0	0	9232	435	15	5		5	MACF1	1	39917738	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	134738	39917738	209332883	21	115943											
BMP8A	353500	broad.mit.edu	37	chr1	39991331	39991331	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctggccaggtgcacctgaTgaagccaaacgcagtcccca	10	15	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39991331	C	C	39991331	3	2	129	1	0	0	0	0	1	0	0	0	1472	1464	51	5	1096	5	BMP8A	1	39991331	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	73593	39991331	209259290	22	115944											
RLF	6018	broad.mit.edu	37	chr1	40706012	40706012	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcttgccttaaaacagcttCattatcttcggccagtggtg	9	10	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40706012	T	T	40706012	3	4	129	1	0	0	0	0	1	0	0	0	13500	826	29	4	5668	4	RLF	1	40706012	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	714681	40706012	208544609	23	115945											
HIVEP3	59269	broad.mit.edu	37	chr1	42049802	42049802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagaagccacaggggcCgcaggggtagggcctctcac	17	11	1	1	rs147878871		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42049802	A	A	42049802	3	1	129	1	0	0	0	0	1	0	0	0	7255	652	23	1	6577	1	HIVEP3	1	42049802	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1343790	42049802	207200819	24	115946											
SLC6A9	6536	broad.mit.edu	37	chr1	44482674	44482674	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcccagcctctcagcctGcctggcaccaaggagggggc	14	16	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44482674	A	A	44482674	1	1	129	0	1	0	0	0	0	0	0	0	14805	1334	46	4		4	SLC6A9	1	44482674	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2432872	44482674	204767947	25	115947											
GPBP1L1	60313	broad.mit.edu	37	chr1	46117355	46117355	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacaaagcaggtgaggtctCttttgggctgggtgtcctgt	14	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46117355	G	G	46117355	1	3	129	0	1	0	0	0	0	0	0	0	6661	928	32	4		4	GPBP1L1	1	46117355	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1634681	46117355	203133266	26	115948											
MKNK1	8569	broad.mit.edu	37	chr1	47040510	47040510	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggcagtttttaagtccttCatcctttttattagcttgac	7	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47040510	A	A	47040510	1	1	129	0	1	0	0	0	0	0	0	0	9697	841	29	3		3	MKNK1	1	47040510	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	923155	47040510	202210111	27	115949											
SLC5A9	200010	broad.mit.edu	37	chr1	48694784	48694784	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatttcacagatgaggaaaTcaaggtctggaggagacaga	12	7	3	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48694784	C	C	48694784	1	2	129	0	1	0	0	0	0	0	0	0	14786	1435	50	5		5	SLC5A9	1	48694784	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1654274	48694784	200555837	28	115950											
EPS15	2060	broad.mit.edu	37	chr1	51860177	51860177	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acacttcacagctgaaacctCatcaccactccaaagaatat	3	14	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51860177	G	G	51860177	1	3	129	0	1	0	0	0	0	0	0	0	5234	841	29	4		4	EPS15	1	51860177	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3165393	51860177	197390444	29	115951											
FAM159A	348378	broad.mit.edu	37	chr1	53122761	53122761	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttctggagtctcttcagtGaaaggtgggagtgggaaagg	16	6	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53122761	A	A	53122761	1	1	129	0	1	0	0	0	0	0	0	0	5514	1305	45	4		4	FAM159A	1	53122761	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1262584	53122761	196127860	30	115952											
KANK4	163782	broad.mit.edu	37	chr1	62703976	62703976	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagggacctgccctgctcCgcgtgggctctcagaagccc	12	18	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62703976	T	T	62703976	2	4	129	1	0	0	0	0	0	0	0	1	8049	639	23	4		4	KANK4	1	62703976	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	9581215	62703976	186546645	31	115953											
RPE65	6121	broad.mit.edu	37	chr1	68910312	68910312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgggtagacattaacaaGggcattgtcagtaacctcta	9	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68910312	T	T	68910312	3	4	129	1	0	0	0	0	1	0	0	0	13656	1000	35	2	1244	2	RPE65	1	68910312	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	6206336	68910312	180340309	32	115954											
NEGR1	257194	broad.mit.edu	37	chr1	72058514	72058514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttacggttaagaggcaggCtcgcattggttgtgcctagc	13	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72058514	A	A	72058514	3	1	129	1	0	0	0	0	1	0	0	0	10412	797	28	3	146	3	NEGR1	1	72058514	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3148202	72058514	177192107	33	115955											
NEGR1	257194	broad.mit.edu	37	chr1	72241785	72241785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgactcttaagttctgaaCaagtgaggttagtgaggtta	12	4	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72241785	A	A	72241785	1	1	129	0	1	0	0	0	0	0	0	0	10412	493	17	3		3	NEGR1	1	72241785	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	183271	72241785	177008836	34	115956											
TNNI3K	51086	broad.mit.edu	37	chr1	74663994	74663994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagggaccctccggaagtatCgctgcgagaagccacccagc	12	14	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74663994	T	T	74663994	3	4	129	1	0	0	0	0	1	0	0	0	16452	893	31	4	34	4	TNNI3K	1	74663994	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2422209	74663994	174586627	35	115957											
AK5	26289	broad.mit.edu	37	chr1	77763335	77763335	+	Silent	SNP	G	A	A													gtgggagaattattaagaaaGaagatccacagtaccagcag							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763335	A	A	77763335	2	1	129	1	0	0	0	0	0	0	0	1	443	933	33	4		4	AK5	1	77763335	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	3099341	77763335	171487286	36	115958	506	2									
AK5	26289	broad.mit.edu	37	chr1	77763337	77763337	+	Missense_Mutation	SNP	A	T	T													gggagaattattaagaaagaAgatccacagtaccagcagca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77763337	T	T	77763337	3	4	129	1	0	0	0	0	1	0	0	0	443	72	3	5	523	5	AK5	1	77763337	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	2	77763337	171487284	37	115959	506	2									
AK5	26289	broad.mit.edu	37	chr1	77876659	77876659	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaacttgtctgtcctgatttCccccagtttgatgccgaccg	8	13	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77876659	T	T	77876659	1	4	129	0	1	0	0	0	0	0	0	0	443	870	30	4		4	AK5	1	77876659	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	113322	77876659	171373962	38	115960											
IFI44	10561	broad.mit.edu	37	chr1	79128523	79128523	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagacgaatgctatgggcTgcagatgacttcttagagga	13	7	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79128523	A	A	79128523	2	1	129	1	0	0	0	0	0	0	0	1	7587	1567	55	5		5	IFI44	1	79128523	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	1251864	79128523	170122098	39	115961											
WDR63	126820	broad.mit.edu	37	chr1	85595688	85595688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagatggcaagtgtcaacCactattttgaaagagaagtc	9	7	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85595688	A	A	85595688	3	1	129	1	0	0	0	0	1	0	0	0	17441	594	21	2	2507	2	WDR63	1	85595688	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6467165	85595688	163654933	40	115962											
GBP5	115362	broad.mit.edu	37	chr1	89735201	89735201	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcattaaagttctcgatgAggcacatggggtctgacatg	12	8	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89735201	G	G	89735201	3	3	129	1	0	0	0	0	1	0	0	0	6339	304	11	5	1762	5	GBP5	1	89735201	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	4139513	89735201	159515420	41	115963											
ARHGAP29	9411	broad.mit.edu	37	chr1	94668512	94668512	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttccaaagctcttttatttCtttcctttgtttttccattt	2	9	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94668512	T	T	94668512	3	4	129	1	0	0	0	0	1	0	0	0	880	922	32	4	2925	4	ARHGAP29	1	94668512	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4933311	94668512	154582109	42	115964											
ARHGAP29	9411	broad.mit.edu	37	chr1	94668650	94668650	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattatacatataaattaatCtttacctgcacaaatttgtt	2	7	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94668650	G	G	94668650	1	3	129	0	1	0	0	0	0	0	0	0	880	928	32	4		4	ARHGAP29	1	94668650	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	138	94668650	154581971	43	115965											
RWDD3	25950	broad.mit.edu	37	chr1	95712169	95712169	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaatgcaaagagaaaatGattagtgtactgtttgaaac	9	3	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95712169	A	A	95712169	3	1	129	1	0	0	0	0	1	0	0	0	13868	1290	45	4	670	4	RWDD3	1	95712169	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1043519	95712169	153538452	44	115966											
COL11A1	1301	broad.mit.edu	37	chr1	103474110	103474110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatatttcacttaatttagCaatttcctaactacttttat	2	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103474110	A	A	103474110	1	1	129	0	1	0	0	0	0	0	0	0	3699	725	25	3		3	COL11A1	1	103474110	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	7761941	103474110	145776511	45	115967											
EPS8L3	79574	broad.mit.edu	37	chr1	110301168	110301168	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctagggtcctctggtgGggctgttctggagggatccc	16	10	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110301168	T	T	110301168	2	4	129	1	0	0	0	0	0	0	0	1	5239	1219	43	2		2	EPS8L3	1	110301168	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	6827058	110301168	138949453	46	115968											
SLC6A17	388662	broad.mit.edu	37	chr1	110734898	110734898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttacctgggagtgggcagGggtgggggcgcaggtgtgca	21	8	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110734898	T	T	110734898	1	4	129	0	1	0	0	0	0	0	0	0	14794	1247	43	2		2	SLC6A17	1	110734898	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	433730	110734898	138515723	47	115969											
KCND3	3752	broad.mit.edu	37	chr1	112329757	112329757	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagagaaacagggtgtaaGggagagagggccatttggga	20	3	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112329757	C	C	112329757	1	2	129	0	1	0	0	0	0	0	0	0	8090	1015	35	4		4	KCND3	1	112329757	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1594859	112329757	136920864	48	115970											
SLC16A1	6566	broad.mit.edu	37	chr1	113456568	113456568	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtgtctttctggtccggaGattctgctgctttggtaact	11	9	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113456568	C	C	113456568	3	2	129	1	0	0	0	0	1	0	0	0	14515	942	33	4	58	4	SLC16A1	1	113456568	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1126811	113456568	135794053	49	115971											
IGSF3	3321	broad.mit.edu	37	chr1	117142550	117142550	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggcacatagcccacaggtCcgcagcactcacctggctgc	11	16	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117142550	G	G	117142550	1	3	129	0	1	0	0	0	0	0	0	0	7671	870	30	4		4	IGSF3	1	117142550	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3685982	117142550	132108071	50	115972											
TTF2	8458	broad.mit.edu	37	chr1	117631543	117631543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagctacaagcctgtgccCgttgggctgtcactggaacc	12	12	1	0	rs35565289	byFrequency	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117631543	A	A	117631543	3	1	129	1	0	0	0	0	1	0	0	0	16845	652	23	1	2331	1	TTF2	1	117631543	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	488993	117631543	131619078	51	115973											
HAO2	51179	broad.mit.edu	37	chr1	119929520	119929520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtatgtgtgagtgtgtcCacatcaagggactctgtgaa	13	6	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119929520	A	A	119929520	1	1	129	0	1	0	0	0	0	0	0	0	7018	609	21	2		2	HAO2	1	119929520	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2297977	119929520	129321101	52	115974											
NOTCH2	4853	broad.mit.edu	37	chr1	120510124	120510124	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcattctggcaggggtctGaatggcactcattgatgtcc	11	10	4	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120510124	C	C	120510124	4	2	129	1	0	0	0	0	0	1	0	0	10643	1294	45	4	6138	4	NOTCH2	1	120510124	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	580604	120510124	128740497	53	115975											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857704	144857704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaattcataccaacatccCggactggaggggacacagct	12	11	1	0	rs144397176		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144857704	A	A	144857704	3	1	129	1	0	0	0	0	1	0	0	0	11737	652	23	1	714	1	PDE4DIP	1	144857704	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	24347580	144857704	104392917	54	115976											
LIX1L	128077	broad.mit.edu	37	chr1	145492316	145492316	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttaatgaacatccttccCgaagaatcactgatgagttc	7	9	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145492316	A	A	145492316	2	1	129	1	0	0	0	0	0	0	0	1	8906	644	23	1		1	LIX1L	1	145492316	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	634612	145492316	103758305	55	115977											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149783928	149783928	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaagtaatccgaactacCgcaaaacgggctggttatgc	10	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149783928	T	T	149783928	1	4	129	0	1	0	0	0	0	0	0	0	7247	666	23	4		4	HIST2H2BF	1	149783928	5'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	4291612	149783928	99466693	56	115978											
SV2A	9900	broad.mit.edu	37	chr1	149877499	149877499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggatgcaatgctgacccCgccaaaaaggcagagcagag	12	12	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149877499	A	A	149877499	3	1	129	1	0	0	0	0	1	0	0	0	15535	652	23	1	258	1	SV2A	1	149877499	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	93571	149877499	99373122	57	115979											
MTMR11	10903	broad.mit.edu	37	chr1	149908142	149908142	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttggtccagagggttgaGgggggtctagagttaacccc	15	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149908142	A	A	149908142	1	1	129	0	1	0	0	0	0	0	0	0	10034	1015	35	4		4	MTMR11	1	149908142	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	30643	149908142	99342479	58	115980											
TCHHL1	126637	broad.mit.edu	37	chr1	152058337	152058337	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgctggtaccactgcctcCagagctctgtttttctcacc	7	15	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152058337	G	G	152058337	2	3	129	1	0	0	0	0	0	0	0	1	15823	581	21	4		4	TCHHL1	1	152058337	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	2150195	152058337	97192284	59	115981											
HRNR	388697	broad.mit.edu	37	chr1	152192118	152192118	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcggacccatgtcggcCgcgactaggagactggccag	13	12	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152192118	T	T	152192118	3	4	129	1	0	0	0	0	1	0	0	0	7426	652	23	4	6569	4	HRNR	1	152192118	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	133781	152192118	97058503	60	115982											
FLG	2312	broad.mit.edu	37	chr1	152277449	152277449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctgactgctggtggcGggatccgtgtctctctcctg	14	12	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152277449	T	T	152277449	3	4	129	1	0	0	0	0	1	0	0	0	5979	1116	39	1	2276	1	FLG	1	152277449	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	85331	152277449	96973172	61	115983											
FLG	2312	broad.mit.edu	37	chr1	152278919	152278919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtggtgtggctgtgatGggaccctgagtgtccagagc	18	7	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152278919	T	T	152278919	3	4	129	1	0	0	0	0	1	0	0	0	5979	1348	47	2	3746	2	FLG	1	152278919	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1470	152278919	96971702	62	115984											
FLG	2312	broad.mit.edu	37	chr1	152281985	152281985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcgtgcctgctcgtggcGggatctttgtcttcctccag	12	13	3	0	rs138288591		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281985	T	T	152281985	3	4	129	1	0	0	0	0	1	0	0	0	5979	1116	39	1	6812	1	FLG	1	152281985	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3066	152281985	96968636	63	115985											
FLG2	388698	broad.mit.edu	37	chr1	152326042	152326042	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	accctctctgtgtggactgtCcatgaccagagtggccatgt	11	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152326042	G	G	152326042	3	3	129	1	0	0	0	0	1	0	0	0	5980	855	30	4	2959	4	FLG2	1	152326042	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	44057	152326042	96924579	64	115986											
LCE3B	353143	broad.mit.edu	37	chr1	152586476	152586476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaggtgctgcaggtccCaccgatgccggcgccagagc	13	16	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152586476	A	A	152586476	3	1	129	1	0	0	0	0	1	0	0	0	8742	594	21	2	192	2	LCE3B	1	152586476	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	260434	152586476	96664145	65	115987											
S100A7	6278	broad.mit.edu	37	chr1	153430435	153430435	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcggcgaggtaatttgtGccctttttgtcctgtgaaga	11	8	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153430435	A	A	153430435	2	1	129	1	0	0	0	0	0	0	0	1	13894	1306	46	4		4	S100A7	1	153430435	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	843959	153430435	95820186	66	115988											
RAB13	5872	broad.mit.edu	37	chr1	153954987	153954987	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctaatacttcctctcttggtCggggatgggggtgtggatct	14	8	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153954987	T	T	153954987	1	4	129	0	1	0	0	0	0	0	0	0	13007	899	31	4		4	RAB13	1	153954987	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	524552	153954987	95295634	67	115989											
TPM3	7170	broad.mit.edu	37	chr1	154141852	154141852	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacttcagtttctgggcataGagctcatctggacaggcaca	10	10	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154141852	C	C	154141852	2	2	129	1	0	0	0	0	0	0	0	1	16531	929	33	4		4	TPM3	1	154141852	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	186865	154141852	95108769	68	115990											
ADAR	103	broad.mit.edu	37	chr1	154560582	154560582	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttgaggaaaggaggcGggggcatgtatcactcaccg	15	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154560582	T	T	154560582	1	4	129	0	1	0	0	0	0	0	0	0	281	1131	39	1		1	ADAR	1	154560582	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	418730	154560582	94690039	69	115991											
ADAR	103	broad.mit.edu	37	chr1	154573599	154573599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcatattctaacagccCgctgatggggttcttcagct	11	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154573599	A	A	154573599	3	1	129	1	0	0	0	0	1	0	0	0	281	652	23	1	2217	1	ADAR	1	154573599	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	13017	154573599	94677022	70	115992											
PMVK	10654	broad.mit.edu	37	chr1	154897565	154897565	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagagtcagccccacccCcacctcagcaggccccagct	8	20	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154897565	A	A	154897565	1	1	129	0	1	0	0	0	0	0	0	0	12239	638	22	2		2	PMVK	1	154897565	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	323966	154897565	94353056	71	115993											
FAM189B	10712	broad.mit.edu	37	chr1	155218083	155218083	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taggcggaagaggcaggcttCagagcagagccctgcagaga	16	9	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155218083	G	G	155218083	3	3	129	1	0	0	0	0	1	0	0	0	5564	835	29	4	423	4	FAM189B	1	155218083	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	320518	155218083	94032538	72	115994											
PKLR	5313	broad.mit.edu	37	chr1	155263058	155263058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgacctcagtgggatcaCggcttagtggcgctgcccga	15	12	2	1	rs149932430		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155263058	A	A	155263058	3	1	129	1	0	0	0	0	1	0	0	0	12071	536	19	3	390	3	PKLR	1	155263058	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	44975	155263058	93987563	73	115995											
PEAR1	375033	broad.mit.edu	37	chr1	156877446	156877446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttctggcttcttctgccCcagcacccattcttgccaaa	5	17	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156877446	A	A	156877446	3	1	129	1	0	0	0	0	1	0	0	0	11806	623	22	2	711	2	PEAR1	1	156877446	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1614388	156877446	92373175	74	115996											
FCRL1	115350	broad.mit.edu	37	chr1	157772117	157772117	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgccccagggaaatgTggagcccagtttgtgactgg	15	8	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157772117	A	A	157772117	1	1	129	0	1	0	0	0	0	0	0	0	5851	1711	59	5		5	FCRL1	1	157772117	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	894671	157772117	91478504	75	115997											
CADM3	57863	broad.mit.edu	37	chr1	159163167	159163167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagcagaagtgtgacccCatggggcctctccttcctat	12	12	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159163167	A	A	159163167	1	1	129	0	1	0	0	0	0	0	0	0	2594	609	21	2		2	CADM3	1	159163167	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1391050	159163167	90087454	76	115998											
ITLN1	55600	broad.mit.edu	37	chr1	160853358	160853358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcattcccggtttgacaCaaaacctaccctctcctatc	3	16	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160853358	A	A	160853358	1	1	129	0	1	0	0	0	0	0	0	0	7980	493	17	3		3	ITLN1	1	160853358	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1690191	160853358	88397263	77	115999											
ITLN2	142683	broad.mit.edu	37	chr1	160920527	160920527	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcaacagacactgagcctGactgggccaggaggtaccag	13	11	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160920527	T	T	160920527	1	4	129	0	1	0	0	0	0	0	0	0	7981	1305	45	3		3	ITLN2	1	160920527	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	67169	160920527	88330094	78	116000											
ITLN2	142683	broad.mit.edu	37	chr1	160920803	160920803	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacactccacacctcacccTcacccaagtaggagagaagt	6	17	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160920803	G	G	160920803	1	3	129	0	1	0	0	0	0	0	0	0	7981	1566	54	5		5	ITLN2	1	160920803	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	276	160920803	88329818	79	116001											
UFC1	51506	broad.mit.edu	37	chr1	161123854	161123854	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagactaacgccggacccCgagatcgtgagttgtgggtg	15	9	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161123854	A	A	161123854	2	1	129	1	0	0	0	0	0	0	0	1	17060	644	23	1		1	UFC1	1	161123854	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	203051	161123854	88126767	80	116002											
MPZ	4359	broad.mit.edu	37	chr1	161275780	161275780	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggcgtctgggggaggggCgcacacatcagtcaccgagc	16	12	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161275780	T	T	161275780	1	4	129	0	1	0	0	0	0	0	0	0	9842	783	27	4		4	MPZ	1	161275780	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	151926	161275780	87974841	81	116003											
FCGR2B	2213	broad.mit.edu	37	chr1	161647156	161647156	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggctgacaaagttgggGtgagtgatcccagccatctc	13	9	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161647156	T	T	161647156	5	4	129	1	0	0	0	0	0	0	1	0	5839	1275	44	3	882	3	FCGR2B	1	161647156	Splice_Site	SNP	G	TCGA-44-6777-01A-11D-1855-08	371376	161647156	87603465	82	116004											
FCRLA	84824	broad.mit.edu	37	chr1	161682099	161682099	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgtgagctggggttcAgtgtgagcaggttaagaagg	17	5	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161682099	T	T	161682099	1	4	129	0	1	0	0	0	0	0	0	0	5857	203	7	5		5	FCRLA	1	161682099	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	34943	161682099	87568522	83	116005											
OLFML2B	25903	broad.mit.edu	37	chr1	161953507	161953507	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtgacctggtggccattGtcccaggcatagagcaggcg	14	10	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161953507	A	A	161953507	2	1	129	1	0	0	0	0	0	0	0	1	10953	1368	48	4		4	OLFML2B	1	161953507	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	271408	161953507	87297114	84	116006											
C1orf110	339512	broad.mit.edu	37	chr1	162825238	162825238	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattaggatgtggcccccttCagtatcggccaaggtaatat	10	9	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162825238	G	G	162825238	1	3	129	0	1	0	0	0	0	0	0	0	2003	841	29	4		4	C1orf110	1	162825238	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	871731	162825238	86425383	85	116007											
XCL2	6846	broad.mit.edu	37	chr1	168511125	168511125	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttggttaagttgaggtgtTcctctatgctgacctacttt	9	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168511125	C	C	168511125	1	2	129	0	1	0	0	0	0	0	0	0	17551	1798	62	5		5	XCL2	1	168511125	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	5685887	168511125	80739496	86	116008											
NME7	29922	broad.mit.edu	37	chr1	169256500	169256500	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagaaaataaacattgctctCctattaacaaaatgtactga	4	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169256500	G	G	169256500	1	3	129	0	1	0	0	0	0	0	0	0	10591	870	30	4		4	NME7	1	169256500	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	745375	169256500	79994121	87	116009											
KIFAP3	22920	broad.mit.edu	37	chr1	170015946	170015946	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaatgagtttacattcttCaaccaccttccttgccaggg	7	11	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170015946	T	T	170015946	3	4	129	1	0	0	0	0	1	0	0	0	8381	835	29	4	2224	4	KIFAP3	1	170015946	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	759446	170015946	79234675	88	116010											
C1orf129	80133	broad.mit.edu	37	chr1	170959103	170959103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgcacttcacccaagaaGgtcatctttcaacttatgga	6	11	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170959103	T	T	170959103	3	4	129	1	0	0	0	0	1	0	0	0	2016	991	35	2	1025	2	C1orf129	1	170959103	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	943157	170959103	78291518	89	116011											
TNN	63923	broad.mit.edu	37	chr1	175113667	175113667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccctaatggcagatatgGggagaccaagcacagtgagg	13	9	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175113667	T	T	175113667	3	4	129	1	0	0	0	0	1	0	0	0	16446	1232	43	2	3806	2	TNN	1	175113667	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	4154564	175113667	74136954	90	116012											
TNR	7143	broad.mit.edu	37	chr1	175375383	175375383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcttggcagcagttggcGttgcactggtctcgcagcac	12	12	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175375383	T	T	175375383	3	4	129	1	0	0	0	0	1	0	0	0	16461	1136	40	3	3692	3	TNR	1	175375383	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	261716	175375383	73875238	91	116013											
SEC16B	89866	broad.mit.edu	37	chr1	177906305	177906305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgcttcctccccaccCagaccctacattcaatgtgg	5	17	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177906305	A	A	177906305	1	1	129	0	1	0	0	0	0	0	0	0	14100	609	21	2		2	SEC16B	1	177906305	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2530922	177906305	71344316	92	116014											
ABL2	27	broad.mit.edu	37	chr1	179102295	179102295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaccacacccagccaggCcaacttatttttaatataaa	4	13	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179102295	A	A	179102295	1	1	129	0	1	0	0	0	0	0	0	0	93	754	26	3		3	ABL2	1	179102295	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1195990	179102295	70148326	93	116015											
CEP350	9857	broad.mit.edu	37	chr1	179989900	179989900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtctctctgaagaagaGggagaccaggatggacagcc	16	8	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179989900	T	T	179989900	3	4	129	1	0	0	0	0	1	0	0	0	3284	991	35	2	3033	2	CEP350	1	179989900	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	887605	179989900	69260721	94	116016											
FAM5C	339479	broad.mit.edu	37	chr1	190067362	190067362	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgcaaaagtgctgaatccTgggatccctgagtatagggg	14	7	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067362	A	A	190067362	3	1	129	1	0	0	0	0	1	0	0	0	5645	1580	55	5	217	5	FAM5C	1	190067362	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	10077462	190067362	59183259	95	116017											
CFH	3075	broad.mit.edu	37	chr1	196696041	196696041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcaattacgtgtattcatgGagtatggacccaacttcccc	7	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196696041	T	T	196696041	3	4	129	1	0	0	0	0	1	0	0	0	3313	1174	41	3	2279	3	CFH	1	196696041	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	6628679	196696041	52554580	96	116018											
F13B	2165	broad.mit.edu	37	chr1	197031046	197031046	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctcttgaattttatacaAtaactttacatcagagatgt	5	6	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197031046	G	G	197031046	2	3	129	1	0	0	0	0	0	0	0	1	5384	98	4	5		5	F13B	1	197031046	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	335005	197031046	52219575	97	116019											
CRB1	23418	broad.mit.edu	37	chr1	197326027	197326027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacccctgccagtccaatgGggaatgtgtggagctgtcct	12	11	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197326027	A	A	197326027	3	1	129	1	0	0	0	0	1	0	0	0	3880	1232	43	4	1073	4	CRB1	1	197326027	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	294981	197326027	51924594	98	116020											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200827089	200827089	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagccacatacccgctaaaActttatctgccagtgttgat	6	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200827089	G	G	200827089	3	3	129	1	0	0	0	0	1	0	0	0	2638	43	2	5	4405	5	CAMSAP1L1	1	200827089	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	3501062	200827089	48423532	99	116021											
KLHL12	59349	broad.mit.edu	37	chr1	202880884	202880884	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaaagcattatcgcctttCtgcctgtggacgccgccgaa	9	13	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202880884	G	G	202880884	1	3	129	0	1	0	0	0	0	0	0	0	8439	928	32	4		4	KLHL12	1	202880884	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2053795	202880884	46369737	100	116022											
ATP2B4	493	broad.mit.edu	37	chr1	203652479	203652479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagattaatgtccactatgGaggtgtacagaatctctgca	9	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203652479	T	T	203652479	3	4	129	1	0	0	0	0	1	0	0	0	1146	1174	41	3	148	3	ATP2B4	1	203652479	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	771595	203652479	45598142	101	116023											
PLEKHA6	22874	broad.mit.edu	37	chr1	204217933	204217933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtggggtgcacgaaccCcgctccctgggttaccgtgg	16	12	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204217933	A	A	204217933	1	1	129	0	1	0	0	0	0	0	0	0	12155	638	22	2		2	PLEKHA6	1	204217933	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	565454	204217933	45032688	102	116024											
FAIM3	9214	broad.mit.edu	37	chr1	207087253	207087253	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtattgcttcagagtaactCggcccttgtattctgccttg	10	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207087253	T	T	207087253	3	4	129	1	0	0	0	0	1	0	0	0	5423	884	31	4	976	4	FAIM3	1	207087253	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2869320	207087253	42163368	103	116025											
CD55	1604	broad.mit.edu	37	chr1	207498073	207498073	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagaatttaaaatggtcCacagcagtcgaattttgtaa	7	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207498073	A	A	207498073	2	1	129	1	0	0	0	0	0	0	0	1	3054	581	21	2		2	CD55	1	207498073	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	410820	207498073	41752548	104	116026											
CR1L	1379	broad.mit.edu	37	chr1	207870915	207870915	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaggacaacttttcaccCgggcaggaagtgttctacag	11	10	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207870915	A	A	207870915	2	1	129	1	0	0	0	0	0	0	0	1	3873	639	23	1		1	CR1L	1	207870915	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	372842	207870915	41379706	105	116027											
LAMB3	3914	broad.mit.edu	37	chr1	209790949	209790949	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacctttgtggaaagagggaGatctggcctttgtggtgggt	16	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209790949	C	C	209790949	1	2	129	0	1	0	0	0	0	0	0	0	8684	957	33	4		4	LAMB3	1	209790949	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1920034	209790949	39459672	106	116028											
LAMB3	3914	broad.mit.edu	37	chr1	209799153	209799153	+	Frame_Shift_Del	DEL	T	-	-													ccctgaccacaggctggcggTggcattgcggagtctaccaa							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	209799153	-	-	209799153	7	5	129	1	0	1	0	1	0	0	0	0	8684	1696	59	0	1742	0	LAMB3	1	209799153	Frame_Shift_Del	DEL	T	TCGA-44-6777-01A-11D-1855-08	8204	209799153	39451468	107	116029											
KCNH1	3756	broad.mit.edu	37	chr1	211192665	211192665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagtatctaaccagtcaGcatcagtgattgacaaatgg	9	8	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211192665	T	T	211192665	1	4	129	0	1	0	0	0	0	0	0	0	8101	986	34	3		3	KCNH1	1	211192665	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1393512	211192665	38057956	108	116030											
SMYD2	56950	broad.mit.edu	37	chr1	214478428	214478428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaggtaaggtgaaccttGgctctgctttccaaccaagt	10	9	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214478428	T	T	214478428	1	4	129	0	1	0	0	0	0	0	0	0	14936	1363	47	2		2	SMYD2	1	214478428	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3285763	214478428	34772193	109	116031											
USH2A	7399	broad.mit.edu	37	chr1	216405189	216405189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtgtgagccaccaagcCgggcaaaaaaaatacttttt	9	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216405189	A	A	216405189	1	1	129	0	1	0	0	0	0	0	0	0	17162	667	23	1		1	USH2A	1	216405189	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1926761	216405189	32845432	110	116032											
USH2A	7399	broad.mit.edu	37	chr1	216500900	216500900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcagcatttatcctttcgGttcttgaggtttacaatgca	7	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216500900	T	T	216500900	1	4	129	0	1	0	0	0	0	0	0	0	17162	1276	44	3		3	USH2A	1	216500900	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	95711	216500900	32749721	111	116033											
EPRS	2058	broad.mit.edu	37	chr1	220152160	220152160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggctatattattaacaCgaatcagctgtgtgatttct	8	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220152160	A	A	220152160	1	1	129	0	1	0	0	0	0	0	0	0	5233	551	19	3		3	EPRS	1	220152160	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3651260	220152160	29098461	112	116034											
IARS2	55699	broad.mit.edu	37	chr1	220287726	220287726	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttgaaatgatggacaggcGgccatattggtgtatatcaa	13	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220287726	C	C	220287726	3	2	129	1	0	0	0	0	1	0	0	0	7544	1116	39	4	1596	4	IARS2	1	220287726	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	135566	220287726	28962895	113	116035											
MARK1	4139	broad.mit.edu	37	chr1	220777583	220777583	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatggtattttaaaaagaaGaattcctgctttcttatatt	5	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220777583	C	C	220777583	1	2	129	0	1	0	0	0	0	0	0	0	9404	957	33	4		4	MARK1	1	220777583	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	489857	220777583	28473038	114	116036											
MOSC2	54996	broad.mit.edu	37	chr1	220928190	220928190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattgttaggtcccaagacGgggtgggtggagagttctga	17	5	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220928190	T	T	220928190	1	4	129	0	1	0	0	0	0	0	0	0	9808	1131	39	1		1	MOSC2	1	220928190	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	150607	220928190	28322431	115	116037											
C1orf55	163859	broad.mit.edu	37	chr1	226187006	226187006	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccacaccagcgccgcggccTccgccatgtcaccgactacc	8	21	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226187006	A	A	226187006	3	1	129	1	0	0	0	0	1	0	0	0	2069	1551	54	5	1375	5	C1orf55	1	226187006	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	5258816	226187006	23063615	116	116038											
PSEN2	5664	broad.mit.edu	37	chr1	227068353	227068353	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccccgtctgagatgttgGcagggactgtcagatttgcc	13	10	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227068353	T	T	227068353	1	4	129	0	1	0	0	0	0	0	0	0	12757	1218	42	3		3	PSEN2	1	227068353	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	881347	227068353	22182268	117	116039											
GUK1	2987	broad.mit.edu	37	chr1	228335394	228335394	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgctgcccaggccgacatgGagagcagtgagtgtgccgtg	16	11	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228335394	T	T	228335394	4	4	129	1	0	0	0	0	0	1	0	0	6965	1175	41	3	554	3	GUK1	1	228335394	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1267041	228335394	20915227	118	116040											
NUP133	55746	broad.mit.edu	37	chr1	229593883	229593883	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggcatgaccaatttgtaAatccttttgctcaaattctt	6	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229593883	C	C	229593883	1	2	129	0	1	0	0	0	0	0	0	0	10849	29	1	5		5	NUP133	1	229593883	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	1258489	229593883	19656738	119	116041											
URB2	9816	broad.mit.edu	37	chr1	229771885	229771885	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctggagctgcctccaagtCagatcctggacacgtggtcc	11	14	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	229771885	G	G	229771885	3	3	129	1	0	0	0	0	1	0	0	0	17151	827	29	4	1535	4	URB2	1	229771885	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	178002	229771885	19478736	120	116042											
COG2	22796	broad.mit.edu	37	chr1	230814766	230814766	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctatcacagcttcaataaGaagtggaacttgcctgttta	8	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230814766	A	A	230814766	2	1	129	1	0	0	0	0	0	0	0	1	3690	933	33	4		4	COG2	1	230814766	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1042881	230814766	18435855	121	116043											
KCNK1	3775	broad.mit.edu	37	chr1	233807331	233807331	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagggtgcaaggaagagGcttaagtatgttcattttta	13	4	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233807331	T	T	233807331	1	4	129	0	1	0	0	0	0	0	0	0	8128	1218	42	3		3	KCNK1	1	233807331	3'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	2992565	233807331	15443290	122	116044											
LYST	1130	broad.mit.edu	37	chr1	235887233	235887233	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaacatggcaattttattcGatttcagtaaaccttcatgt	6	7	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235887233	T	T	235887233	1	4	129	0	1	0	0	0	0	0	0	0	9216	1073	37	3		3	LYST	1	235887233	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2079902	235887233	13363388	123	116045											
LYST	1130	broad.mit.edu	37	chr1	235887274	235887274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagtatgagtatagttaCagtggcccatgagcacttaa	9	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235887274	A	A	235887274	1	1	129	0	1	0	0	0	0	0	0	0	9216	493	17	3		3	LYST	1	235887274	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	41	235887274	13363347	124	116046											
RYR2	6262	broad.mit.edu	37	chr1	237551419	237551419	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgatgtcctcaggttgCtgcatggacacatggacgag	15	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237551419	G	G	237551419	3	3	129	1	0	0	0	0	1	0	0	0	13880	796	28	4	747	4	RYR2	1	237551419	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1664145	237551419	11699202	125	116047											
RYR2	6262	broad.mit.edu	37	chr1	237806644	237806644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttgattcatgccgggaaGggagaagccatcagaattag	13	6	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237806644	T	T	237806644	3	4	129	1	0	0	0	0	1	0	0	0	13880	991	35	2	7429	2	RYR2	1	237806644	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	255225	237806644	11443977	126	116048											
RYR2	6262	broad.mit.edu	37	chr1	237886377	237886377	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctatctttagattgtaaccTtgtttttagattcccatctt	4	9	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237886377	A	A	237886377	1	1	129	0	1	0	0	0	0	0	0	0	13880	1624	56	5		5	RYR2	1	237886377	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	79733	237886377	11364244	127	116049											
ZP4	57829	broad.mit.edu	37	chr1	238051537	238051537	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggatcaagtgttcttggatGcatggctacatggcagcctg	14	8	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238051537	C	C	238051537	1	2	129	0	1	0	0	0	0	0	0	0	18347	1334	46	4		4	ZP4	1	238051537	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	165160	238051537	11199084	128	116050											
FMN2	56776	broad.mit.edu	37	chr1	240637374	240637374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctactctaaattctttcCatttttaaaagttctttcta	3	8	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240637374	A	A	240637374	1	1	129	0	1	0	0	0	0	0	0	0	6008	609	21	2		2	FMN2	1	240637374	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2585837	240637374	8613247	129	116051											
RGS7	6000	broad.mit.edu	37	chr1	241094093	241094093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgaaaagaagtggaacCcagattagacaaataaaaaa	9	4	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241094093	A	A	241094093	1	1	129	0	1	0	0	0	0	0	0	0	13419	638	22	2		2	RGS7	1	241094093	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	456719	241094093	8156528	130	116052											
ADSS	159	broad.mit.edu	37	chr1	244600239	244600239	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacggtaaacatctataactCagacatatgtaacttaaagg	6	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244600239	A	A	244600239	1	1	129	0	1	0	0	0	0	0	0	0	347	841	29	3		3	ADSS	1	244600239	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3506146	244600239	4650382	131	116053											
AHCTF1	25909	broad.mit.edu	37	chr1	247079428	247079428	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagagaaatgtccaggtatCttaaacagtacctacccttc	6	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247079428	G	G	247079428	1	3	129	0	1	0	0	0	0	0	0	0	408	928	32	4		4	AHCTF1	1	247079428	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2479189	247079428	2171193	132	116054											
NLRP3	114548	broad.mit.edu	37	chr1	247593144	247593144	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaagatcttcaggacCaggttgctggtgtggtttct	14	6	3	2	rs146623139	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247593144	T	T	247593144	1	4	129	0	1	0	0	0	0	0	0	0	10573	609	21	4		4	NLRP3	1	247593144	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	513716	247593144	1657477	133	116055											
OR6F1	343169	broad.mit.edu	37	chr1	247875386	247875386	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggggatcctgaggatGgtgctgatgatgtacacata	15	6	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247875386	T	T	247875386	2	4	129	1	0	0	0	0	0	0	0	1	11295	1335	47	2		2	OR6F1	1	247875386	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	282242	247875386	1375235	134	116056											
OR2L13	284521	broad.mit.edu	37	chr1	248112030	248112030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaataatagtgtatttagGgttcagtatcaactgcagtt	8	4	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112030	T	T	248112030	1	4	129	0	1	0	0	0	0	0	0	0	11100	1247	43	2		2	OR2L13	1	248112030	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	236644	248112030	1138591	135	116057											
OR2M3	127062	broad.mit.edu	37	chr1	248366686	248366686	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaattttcttctatacatCactgcttggctctgagtgct	6	10	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248366686	A	A	248366686	4	1	129	1	0	0	0	0	0	1	0	0	11105	838	29	3	319	3	OR2M3	1	248366686	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	254656	248366686	883935	136	116058											
OR2T4	127074	broad.mit.edu	37	chr1	248524995	248524995	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcacctggatggccaaccAcactggatggtcggatttca	10	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248524995	G	G	248524995	3	3	129	1	0	0	0	0	1	0	0	0	11121	159	6	5	115	5	OR2T4	1	248524995	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	158309	248524995	725626	137	116059											
OR2G6	391211	broad.mit.edu	37	chr1	248685555	248685555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagaactctttgtggccaGtgtagtctttctaattgtcc	10	9	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248685555	T	T	248685555	3	4	129	1	0	0	0	0	1	0	0	0	11094	1029	36	3	610	3	OR2G6	1	248685555	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	160560	248685555	565066	138	116060											
PXDN	7837	broad.mit.edu	37	chr2	1652789	1652789	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgcggatgctgcgggcctcAtgctccgtgctcccgtacac	12	16	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1652789	T	T	1652789	3	4	129	1	0	0	0	0	1	0	0	0	12955	214	8	5	1704	5	PXDN	2	1652789	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08		1652789	241546584	139	116061											
PXDN	7837	broad.mit.edu	37	chr2	1653262	1653262	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacggatttcagcaggcgctCgaaggcggtcagcgaggcgc	16	12	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1653262	A	A	1653262	4	1	129	1	0	0	0	0	0	1	0	0	12955	893	31	3	2177	3	PXDN	2	1653262	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	473	1653262	241546111	140	116062											
KCNS3	3790	broad.mit.edu	37	chr2	18113190	18113190	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaattctaaagcttgcccgGcactcggtaggacttcggtc	11	12	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18113190	A	A	18113190	2	1	129	1	0	0	0	0	0	0	0	1	8160	1190	42	4		4	KCNS3	2	18113190	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	16459928	18113190	225086183	141	116063											
APOB	338	broad.mit.edu	37	chr2	21265357	21265357	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcgcatcttctaacgtgGggagaaatacgtcagccaca	12	10	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21265357	T	T	21265357	1	4	129	0	1	0	0	0	0	0	0	0	787	1247	43	2		2	APOB	2	21265357	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3152167	21265357	221934016	142	116064											
ATAD2B	54454	broad.mit.edu	37	chr2	23980608	23980608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcctggaggtctgctccGggtttaaggaactgctgctg	13	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23980608	T	T	23980608	3	4	129	1	0	0	0	0	1	0	0	0	1076	1116	39	1	634	1	ATAD2B	2	23980608	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2715251	23980608	219218765	143	116065											
TP53I3	9540	broad.mit.edu	37	chr2	24303723	24303723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgttgcttcagagaaatcCtcttttttgtaattgaatcc	7	8	2	2	rs61758081	byFrequency;by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24303723	A	A	24303723	3	1	129	1	0	0	0	0	1	0	0	0	16511	680	24	2	425	2	TP53I3	2	24303723	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	323115	24303723	218895650	144	116066											
POMC	5443	broad.mit.edu	37	chr2	25384028	25384028	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtctggctcttctcggaGgtcatgaaaccgccgtagcg	14	12	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25384028	T	T	25384028	2	4	129	1	0	0	0	0	0	0	0	1	12337	987	35	2		2	POMC	2	25384028	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1080305	25384028	217815345	145	116067											
C2orf39	92749	broad.mit.edu	37	chr2	26672836	26672836	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgaaacctgtccccgaCaggagatgccttcttccttc	7	16	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26672836	G	G	26672836	1	3	129	0	1	0	0	0	0	0	0	0	2186	493	17	4		4	C2orf39	2	26672836	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1288808	26672836	216526537	146	116068											
ALK	238	broad.mit.edu	37	chr2	29551314	29551314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattccaacaagtgaaggagCtctgcagggccatcttggag	12	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29551314	A	A	29551314	3	1	129	1	0	0	0	0	1	0	0	0	525	797	28	3	3642	3	ALK	2	29551314	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2878478	29551314	213648059	147	116069											
LTBP1	4052	broad.mit.edu	37	chr2	33622289	33622289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtgagggtccaggaaGgttacacctgcgattgcttt	14	8	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33622289	T	T	33622289	3	4	129	1	0	0	0	0	1	0	0	0	9160	1000	35	2	5109	2	LTBP1	2	33622289	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	4070975	33622289	209577084	148	116070											
VIT	5212	broad.mit.edu	37	chr2	36943672	36943672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagagcatataaacaataCagtgtatcattttataagaa	6	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36943672	A	A	36943672	1	1	129	0	1	0	0	0	0	0	0	0	17298	493	17	3		3	VIT	2	36943672	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3321383	36943672	206255701	149	116071											
THADA	63892	broad.mit.edu	37	chr2	43805813	43805813	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtagagtggaaagagcaGatgctgagcagccagatagg	16	6	0	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43805813	A	A	43805813	1	1	129	0	1	0	0	0	0	0	0	0	15963	957	33	4		4	THADA	2	43805813	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	6862141	43805813	199393560	150	116072											
BCL11A	53335	broad.mit.edu	37	chr2	60689653	60689653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctccagccttccctgccCccacccctcaaccccaaggc	4	25	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60689653	A	A	60689653	1	1	129	0	1	0	0	0	0	0	0	0	1368	638	22	2		2	BCL11A	2	60689653	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	16883840	60689653	182509720	151	116073											
C2orf86	51057	broad.mit.edu	37	chr2	63667034	63667034	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtaagtgggggagagaggGaggaagacatgctgtgattt	19	2	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63667034	A	A	63667034	1	1	129	0	1	0	0	0	0	0	0	0	2223	1189	41	4		4	C2orf86	2	63667034	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2977381	63667034	179532339	152	116074											
SPRED2	200734	broad.mit.edu	37	chr2	65561881	65561881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttggtgtagaccaagtcCtttcttacatagcattccaa	7	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65561881	A	A	65561881	3	1	129	1	0	0	0	0	1	0	0	0	15211	680	24	2	1041	2	SPRED2	2	65561881	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1894847	65561881	177637492	153	116075											
ALMS1	7840	broad.mit.edu	37	chr2	73680958	73680958	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacagtaatttaccagagtCtttggaatcagtttctgatg	10	6	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73680958	G	G	73680958	3	3	129	1	0	0	0	0	1	0	0	0	535	913	32	4	7331	4	ALMS1	2	73680958	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	8119077	73680958	169518415	154	116076											
DUSP11	8446	broad.mit.edu	37	chr2	74000985	74000985	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtttgaatttaaaaatagtCtcatcatcaggcacttgatg	7	6	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74000985	A	A	74000985	3	1	129	1	0	0	0	0	1	0	0	0	4851	912	32	3	641	3	DUSP11	2	74000985	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	320027	74000985	169198388	155	116077											
REG1A	5967	broad.mit.edu	37	chr2	79349171	79349171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgctcacccaggccgagGgtgcctttgtggcctcactg	13	14	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79349171	T	T	79349171	3	4	129	1	0	0	0	0	1	0	0	0	13318	1232	43	2	251	2	REG1A	2	79349171	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5348186	79349171	163850202	156	116078											
REG3A	5068	broad.mit.edu	37	chr2	79384695	79384695	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagctcctctgtttctTacctgtgcttctcgacaggc	10	13	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384695	A	A	79384695	1	1	129	0	1	0	0	0	0	0	0	0	13320	1769	61	5		5	REG3A	2	79384695	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	35524	79384695	163814678	157	116079											
POLR1A	25885	broad.mit.edu	37	chr2	86255230	86255230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccacgggagcagtcagCagacacaagccaagctgcct	12	13	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86255230	A	A	86255230	1	1	129	0	1	0	0	0	0	0	0	0	12304	725	25	3		3	POLR1A	2	86255230	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	6870535	86255230	156944143	158	116080											
FABP1	2168	broad.mit.edu	37	chr2	88427597	88427597	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccgaccagactgtccacTgtaggctgttttataggggg	13	10	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88427597	A	A	88427597	1	1	129	0	1	0	0	0	0	0	0	0	5401	1595	55	5		5	FABP1	2	88427597	5'Flank	SNP	T	TCGA-44-6777-01A-11D-1855-08	2172367	88427597	154771776	159	116081											
ANKRD36	375248	broad.mit.edu	37	chr2	97860624	97860624	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttttcgaatataaccagaGgaaaaaaggatggagaaata	9	4	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97860624	A	A	97860624	3	1	129	1	0	0	0	0	1	0	0	0	665	1001	35	4	2679	4	ANKRD36	2	97860624	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	9433027	97860624	145338749	160	116082											
C2orf40	84417	broad.mit.edu	37	chr2	106688297	106688297	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttcaattttcattccttTaggtggcataagtggaaata	8	5	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106688297	C	C	106688297	1	2	129	0	1	0	0	0	0	0	0	0	2187	1769	61	5		5	C2orf40	2	106688297	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	8827673	106688297	136511076	161	116083											
SULT1C2	6819	broad.mit.edu	37	chr2	108910768	108910768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgagccatcatccaacacCgccatcctttcattgagtgg	8	14	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108910768	A	A	108910768	3	1	129	1	0	0	0	0	1	0	0	0	15495	652	23	1	241	1	SULT1C2	2	108910768	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2222471	108910768	134288605	162	116084											
RANBP2	5903	broad.mit.edu	37	chr2	109374925	109374925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcatcccctcatcgttgGcccacagagaattatggacc	8	14	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109374925	T	T	109374925	3	4	129	1	0	0	0	0	1	0	0	0	13136	1212	42	3	2593	3	RANBP2	2	109374925	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	464157	109374925	133824448	163	116085											
MERTK	10461	broad.mit.edu	37	chr2	112786085	112786085	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagttgctggagagctctGagggcctggcccagggctcc	15	13	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112786085	A	A	112786085	3	1	129	1	0	0	0	0	1	0	0	0	9572	1291	45	4	2718	4	MERTK	2	112786085	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3411160	112786085	130413288	164	116086											
POLR1B	84172	broad.mit.edu	37	chr2	113322139	113322139	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtttttcagttcctttctaGttttggggttaacccctggg	11	8	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113322139	C	C	113322139	1	2	129	0	1	0	0	0	0	0	0	0	12305	1044	36	4		4	POLR1B	2	113322139	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	536054	113322139	129877234	165	116087											
ACTR3	10096	broad.mit.edu	37	chr2	114691787	114691787	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaactagtttttttttttTcgattaactctttgtttttt	6	4	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114691787	C	C	114691787	1	2	129	0	1	0	0	0	0	0	0	0	212	1798	62	5		5	ACTR3	2	114691787	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1369648	114691787	128507586	166	116088											
UGGT1	56886	broad.mit.edu	37	chr2	128935270	128935270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatccttctagactctggGtggggttgtgcctgtttgtg	14	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128935270	T	T	128935270	1	4	129	0	1	0	0	0	0	0	0	0	17067	1276	44	3		3	UGGT1	2	128935270	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	14243483	128935270	114264103	167	116089											
GPR148	344561	broad.mit.edu	37	chr2	131486884	131486884	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgctgtactggcttttcCttccctcaagcctgctggct	8	15	1	0	rs142929079		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131486884	T	T	131486884	3	4	129	1	0	0	0	0	1	0	0	0	6718	681	24	4	162	4	GPR148	2	131486884	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2551614	131486884	111712489	168	116090											
FAM123C	205147	broad.mit.edu	37	chr2	131521386	131521386	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacaggcctgctcgccggaGagagcaaggccctcggaggg	16	14	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131521386	T	T	131521386	4	4	129	1	0	0	0	0	0	1	0	0	5470	943	33	3	1743	3	FAM123C	2	131521386	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	34502	131521386	111677987	169	116091											
POTEE	445582	broad.mit.edu	37	chr2	131975931	131975931	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaactggttggtagacGcgatctgttggctactactg	14	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131975931	T	T	131975931	1	4	129	0	1	0	0	0	0	0	0	0	12360	1102	38	3		3	POTEE	2	131975931	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	454545	131975931	111223442	170	116092											
LRP1B	53353	broad.mit.edu	37	chr2	141441414	141441414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctaggcagcagccgacccCgaaacagctccgcggccccc	11	20	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141441414	A	A	141441414	1	1	129	0	1	0	0	0	0	0	0	0	9042	667	23	1		1	LRP1B	2	141441414	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	9465483	141441414	101757959	171	116093											
ZEB2	9839	broad.mit.edu	37	chr2	145147141	145147141	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgtatcgtttcgggatcCgtatccatacttttattttc	6	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145147141	A	A	145147141	2	1	129	1	0	0	0	0	0	0	0	1	17750	639	23	1		1	ZEB2	2	145147141	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	3705727	145147141	98052232	172	116094											
PKP4	8502	broad.mit.edu	37	chr2	159488326	159488326	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaccttcgttctgccgtGtctcccgacttgcacattac	7	15	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159488326	T	T	159488326	2	4	129	1	0	0	0	0	0	0	0	1	12082	1364	48	3		3	PKP4	2	159488326	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	14341185	159488326	83711047	173	116095											
FAP	2191	broad.mit.edu	37	chr2	163029272	163029272	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatgaacccctcctttTagcttgagggtctaaggcca	8	10	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163029272	C	C	163029272	1	2	129	0	1	0	0	0	0	0	0	0	5730	1769	61	5		5	FAP	2	163029272	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	3540946	163029272	80170101	174	116096											
ITGA6	3655	broad.mit.edu	37	chr2	173362653	173362653	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaccataaactcctggtgtGaactcttgccgctgtatgta	9	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173362653	A	A	173362653	1	1	129	0	1	0	0	0	0	0	0	0	7950	1305	45	4		4	ITGA6	2	173362653	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	10333381	173362653	69836720	175	116097											
SCRN3	79634	broad.mit.edu	37	chr2	175265748	175265748	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagctgatacagctgaAaaagccctcaatgtcattgt	9	8	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175265748	T	T	175265748	3	4	129	1	0	0	0	0	1	0	0	0	14053	11	1	5	382	5	SCRN3	2	175265748	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1903095	175265748	67933625	176	116098											
TTN	7273	broad.mit.edu	37	chr2	179544735	179544735	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacatgggttacaacttcctCttcaaaggcaacctcttctg	6	12	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179544735	T	T	179544735	3	4	129	1	0	0	0	0	1	0	0	0	16861	922	32	4	70955	4	TTN	2	179544735	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4278987	179544735	63654638	177	116099											
TTN	7273	broad.mit.edu	37	chr2	179560074	179560074	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatatttctaattacttaCctttaggaggtggtggtgct	9	5	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179560074	A	A	179560074	5	1	129	1	0	0	0	0	0	0	1	0	16861	521	18	3	73250	3	TTN	2	179560074	Splice_Site	SNP	C	TCGA-44-6777-01A-11D-1855-08	15339	179560074	63639299	178	116100											
ITGA4	3676	broad.mit.edu	37	chr2	182339792	182339792	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagaaaatggatccatcgTggtaggtattggaactggtc	14	5	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182339792	A	A	182339792	3	1	129	1	0	0	0	0	1	0	0	0	7948	1710	59	5	435	5	ITGA4	2	182339792	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	2779718	182339792	60859581	179	116101											
ZNF804A	91752	broad.mit.edu	37	chr2	185802546	185802546	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagttgctccctgcaagcCtaaaaagaaacggaggcgaa	10	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185802546	T	T	185802546	3	4	129	1	0	0	0	0	1	0	0	0	18299	681	24	4	2437	4	ZNF804A	2	185802546	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3462754	185802546	57396827	180	116102											
ZSWIM2	151112	broad.mit.edu	37	chr2	187693457	187693457	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggttatatataacttgtcCatcaatagggcatgaattgc	9	6	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187693457	T	T	187693457	3	4	129	1	0	0	0	0	1	0	0	0	18370	603	21	4	749	4	ZSWIM2	2	187693457	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1890911	187693457	55505916	181	116103											
COL5A2	1290	broad.mit.edu	37	chr2	189929292	189929292	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatattcttacccgagcaccTggaagcccaggttcccctgg	9	14	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189929292	A	A	189929292	2	1	129	1	0	0	0	0	0	0	0	1	3729	1567	55	5		5	COL5A2	2	189929292	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	2235835	189929292	53270081	182	116104											
DNAH7	56171	broad.mit.edu	37	chr2	196915752	196915752	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagcttatggttactttacTaagatagttatttgtcctaa	6	5	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196915752	A	A	196915752	1	1	129	0	1	0	0	0	0	0	0	0	4646	1537	53	5		5	DNAH7	2	196915752	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	6986460	196915752	46283621	183	116105											
HECW2	57520	broad.mit.edu	37	chr2	197208503	197208503	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcatctagaaaaaccaaaGaaacacttttcagattaatt	3	8	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197208503	C	C	197208503	1	2	129	0	1	0	0	0	0	0	0	0	7110	957	33	4		4	HECW2	2	197208503	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	292751	197208503	45990870	184	116106											
PLCL1	5334	broad.mit.edu	37	chr2	198949502	198949502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacctatctaatagaagacCagttcagggggccagctgac	10	11	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198949502	A	A	198949502	3	1	129	1	0	0	0	0	1	0	0	0	12134	595	21	2	1267	2	PLCL1	2	198949502	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1740999	198949502	44249871	185	116107											
SATB2	23314	broad.mit.edu	37	chr2	200246493	200246493	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactgtcgcgtcgggtgcatCtgtcacataactgaggggga	14	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200246493	A	A	200246493	3	1	129	1	0	0	0	0	1	0	0	0	13966	913	32	3	1836	3	SATB2	2	200246493	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1296991	200246493	42952880	186	116108											
ZDBF2	57683	broad.mit.edu	37	chr2	207169464	207169464	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacaagatgagacacatgTgaatactgggtcatcgtctg	10	8	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207169464	C	C	207169464	3	2	129	1	0	0	0	0	1	0	0	0	17725	1696	59	5	222	5	ZDBF2	2	207169464	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	6922971	207169464	36029909	187	116109											
FAM119A	151194	broad.mit.edu	37	chr2	208489097	208489097	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatagggcacgagggcCattccgcctgcaccccgccc	10	19	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208489097	T	T	208489097	3	4	129	1	0	0	0	0	1	0	0	0	5459	594	21	4	665	4	FAM119A	2	208489097	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1319633	208489097	34710276	188	116110											
MAP2	4133	broad.mit.edu	37	chr2	210560774	210560774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaggatgatttcatcactGtagtgcaaaccacaactgat	8	9	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210560774	T	T	210560774	3	4	129	1	0	0	0	0	1	0	0	0	9327	1377	48	3	3894	3	MAP2	2	210560774	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2071677	210560774	32638599	189	116111											
ERBB4	2066	broad.mit.edu	37	chr2	212576896	212576896	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatcctgtgccaatgccatCacaagctgtagaaacaagac	8	11	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212576896	A	A	212576896	3	1	129	1	0	0	0	0	1	0	0	0	5251	826	29	3	3003	3	ERBB4	2	212576896	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2016122	212576896	30622477	190	116112											
PNKD	25953	broad.mit.edu	37	chr2	219206749	219206749	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agcgtgggacggcttcagatCcgggccctggctacacctgg	15	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219206749	G	G	219206749	3	3	129	1	0	0	0	0	1	0	0	0	12241	845	30	4	1054	4	PNKD	2	219206749	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6629853	219206749	23992624	191	116113											
RNF25	64320	broad.mit.edu	37	chr2	219532829	219532829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgttcatctgaaagtcctCggggatttcggatagagatc	11	8	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219532829	A	A	219532829	3	1	129	1	0	0	0	0	1	0	0	0	13596	884	31	3	1147	3	RNF25	2	219532829	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	326080	219532829	23666544	192	116114											
COL4A4	1286	broad.mit.edu	37	chr2	227946780	227946780	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattactgcaagaggagggtCcatacatcattcataaaatg	8	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227946780	A	A	227946780	1	1	129	0	1	0	0	0	0	0	0	0	3725	870	30	3		3	COL4A4	2	227946780	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	8413951	227946780	15252593	193	116115											
EIF4E2	9470	broad.mit.edu	37	chr2	233422773	233422773	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtgccttgatagttcgttCatgcctgtattgatatgatg	11	6	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233422773	G	G	233422773	1	3	129	0	1	0	0	0	0	0	0	0	5072	841	29	4		4	EIF4E2	2	233422773	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	5475993	233422773	9776600	194	116116											
UGT1A5	54579	broad.mit.edu	37	chr2	234675589	234675589	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcctttaatcatagtctTaagaggaagatatctaattc	6	7	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234675589	C	C	234675589	1	2	129	0	1	0	0	0	0	0	0	0	17074	1769	61	5		5	UGT1A5	2	234675589	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1252816	234675589	8523784	195	116117											
UGT1A5	54579	broad.mit.edu	37	chr2	234681013	234681013	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgatgaggcacaagggCgcgccacacctgcgccccgc	13	15	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234681013	G	G	234681013	2	3	129	1	0	0	0	0	0	0	0	1	17074	755	27	4		4	UGT1A5	2	234681013	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	5424	234681013	8518360	196	116118											
COL6A3	1293	broad.mit.edu	37	chr2	238283131	238283131	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgggtcaccctctcagaGatgacctgttggacggtccc	12	13	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238283131	C	C	238283131	3	2	129	1	0	0	0	0	1	0	0	0	3733	932	33	4	6125	4	COL6A3	2	238283131	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3602118	238283131	4916242	197	116119											
MLPH	79083	broad.mit.edu	37	chr2	238419681	238419681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatgagcatgtgaaagccCgcttcaagaggttcggaagt	12	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238419681	A	A	238419681	3	1	129	1	0	0	0	0	1	0	0	0	9726	652	23	1	392	1	MLPH	2	238419681	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	136550	238419681	4779692	198	116120											
LRRFIP1	9208	broad.mit.edu	37	chr2	238643909	238643909	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacagtctcttttggtcgcAggcgtctgtgttggatgaag	14	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238643909	C	C	238643909	1	2	129	0	1	0	0	0	0	0	0	0	9114	202	7	5		5	LRRFIP1	2	238643909	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	224228	238643909	4555464	199	116121											
PPP1R7	5510	broad.mit.edu	37	chr2	242109378	242109378	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaagaatctcctgtaagCcttcatgctgagtgactccg	8	11	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242109378	T	T	242109378	1	4	129	0	1	0	0	0	0	0	0	0	12477	754	26	4		4	PPP1R7	2	242109378	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3465469	242109378	1089995	200	116122											
HDLBP	3069	broad.mit.edu	37	chr2	242173318	242173318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattactgccccctttctccCgataatcttgggatggtatt	7	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242173318	A	A	242173318	3	1	129	1	0	0	0	0	1	0	0	0	7092	652	23	1	621	1	HDLBP	2	242173318	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	63940	242173318	1026055	201	116123											
CHL1	10752	broad.mit.edu	37	chr3	447299	447299	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accatggtctcttcagtgaaGatggatcatttattggtgcc	10	8	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	447299	T	T	447299	3	4	129	1	0	0	0	0	1	0	0	0	3380	942	33	3	3682	3	CHL1	3	447299	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08		447299	197575131	202	116124											
GRM7	2917	broad.mit.edu	37	chr3	7456635	7456635	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaacaaagaaaaaaaaaGtcacttttatttttatttct	3	5	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7456635	C	C	7456635	1	2	129	0	1	0	0	0	0	0	0	0	6868	1044	36	4		4	GRM7	3	7456635	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7009336	7456635	190565795	203	116125											
ATP2B2	491	broad.mit.edu	37	chr3	10491257	10491257	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccttgctcgggctgggcCcaagggtcagcgctggacaa	16	12	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10491257	T	T	10491257	1	4	129	0	1	0	0	0	0	0	0	0	1144	638	22	4		4	ATP2B2	3	10491257	5'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	3034622	10491257	187531173	204	116126											
SLC6A11	6538	broad.mit.edu	37	chr3	10861452	10861466	+	In_Frame_Del	DEL	CATCCTGGCATGGGC	-	-													ctgaatgtgtactacatcatCatcctggcatgggccatttt							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10861466	-	-	10861452	7	5	129	1	0	1	0	1	0	0	0	0	14788	816	29	0	457	0	SLC6A11	3	10861452	In_Frame_Del	DEL	CATCCTGGCATGGGC	TCGA-44-6777-01A-11D-1855-08	370195	10861452	187160978	205	116127											
NUP210	23225	broad.mit.edu	37	chr3	13363377	13363377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgtcccctctcctgccCgtgcactgatgtcatttctt	7	15	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13363377	A	A	13363377	1	1	129	0	1	0	0	0	0	0	0	0	10855	667	23	1		1	NUP210	3	13363377	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2501925	13363377	184659053	206	116128											
WNT7A	7476	broad.mit.edu	37	chr3	13896097	13896097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcttgatctcccgggcatCcacaaagaccttggcgaagc	10	14	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13896097	A	A	13896097	3	1	129	1	0	0	0	0	1	0	0	0	17521	855	30	3	555	3	WNT7A	3	13896097	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	532720	13896097	184126333	207	116129											
NR2C2	7182	broad.mit.edu	37	chr3	15045460	15045460	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatccagataatctccacCgactctgctgtagcctcacc	6	17	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15045460	A	A	15045460	2	1	129	1	0	0	0	0	0	0	0	1	10718	639	23	1		1	NR2C2	3	15045460	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1149363	15045460	182976970	208	116130											
DAZL	1618	broad.mit.edu	37	chr3	16633473	16633473	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaatgctctaagaaatctCaaaatacatataccacaagg	4	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16633473	G	G	16633473	1	3	129	0	1	0	0	0	0	0	0	0	4279	841	29	4		4	DAZL	3	16633473	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1588013	16633473	181388957	209	116131											
OXSM	54995	broad.mit.edu	37	chr3	25833258	25833258	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatctcttgctgggttttcCagagcccgggctctgagcac	11	12	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25833258	G	G	25833258	2	3	129	1	0	0	0	0	0	0	0	1	11429	581	21	4		4	OXSM	3	25833258	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	9199785	25833258	172189172	210	116132											
NEK10	152110	broad.mit.edu	37	chr3	27332233	27332233	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctaaaagattttgaccacTatgctttctaacctaaaata	4	8	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27332233	G	G	27332233	3	3	129	1	0	0	0	0	1	0	0	0	10417	1522	53	5	544	5	NEK10	3	27332233	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	1498975	27332233	170690197	211	116133											
DCLK3	85443	broad.mit.edu	37	chr3	36779105	36779105	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcttttccacattggcgGcaatgatgcccatgggccgt	11	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779105	A	A	36779105	3	1	129	1	0	0	0	0	1	0	0	0	4326	1203	42	4	916	4	DCLK3	3	36779105	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	9446872	36779105	161243325	212	116134											
SCN10A	6336	broad.mit.edu	37	chr3	38750953	38750953	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacagcagaaaccagaaactCctgagcaccacttatctttt	5	12	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38750953	G	G	38750953	1	3	129	0	1	0	0	0	0	0	0	0	14025	870	30	4		4	SCN10A	3	38750953	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1971848	38750953	159271477	213	116135											
ZNF619	285267	broad.mit.edu	37	chr3	40528914	40528914	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttataattcaaaactgattCggcatcagagaatccatact	6	8	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40528914	A	A	40528914	2	1	129	1	0	0	0	0	0	0	0	1	18170	875	31	3		3	ZNF619	3	40528914	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1777961	40528914	157493516	214	116136											
LRRC2	79442	broad.mit.edu	37	chr3	46592962	46592962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaaacacgtacttctcCaaggcgctcttctcaagcct	7	13	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46592962	A	A	46592962	3	1	129	1	0	0	0	0	1	0	0	0	9063	593	21	2	1027	2	LRRC2	3	46592962	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6064048	46592962	151429468	215	116137											
SMARCC1	6599	broad.mit.edu	37	chr3	47752263	47752263	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctcattcatccattcattGaaaatatcagtgtccaaaat	3	10	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47752263	A	A	47752263	2	1	129	1	0	0	0	0	0	0	0	1	14889	1281	45	4		4	SMARCC1	3	47752263	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1159301	47752263	150270167	216	116138											
COL7A1	1294	broad.mit.edu	37	chr3	48608499	48608499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtgggggcccggcctgCtgcccctacaactggtgatg	14	14	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48608499	A	A	48608499	1	1	129	0	1	0	0	0	0	0	0	0	3736	812	28	3		3	COL7A1	3	48608499	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	856236	48608499	149413931	217	116139											
COL7A1	1294	broad.mit.edu	37	chr3	48620085	48620085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccagcaacccctggcagcCcctggaggagaggaagggaa	15	12	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48620085	A	A	48620085	3	1	129	1	0	0	0	0	1	0	0	0	3736	637	22	2	4614	2	COL7A1	3	48620085	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	11586	48620085	149402345	218	116140											
NCKIPSD	51517	broad.mit.edu	37	chr3	48718899	48718899	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtcctgggcacagccgcctCagctgctgccttctcctctg	11	17	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48718899	T	T	48718899	3	4	129	1	0	0	0	0	1	0	0	0	10320	835	29	4	1291	4	NCKIPSD	3	48718899	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	98814	48718899	149303531	219	116141											
RBM6	10180	broad.mit.edu	37	chr3	50005024	50005024	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagagattcacttccctttGatttccaggggcattcgggg	12	10	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50005024	A	A	50005024	3	1	129	1	0	0	0	0	1	0	0	0	13252	1290	45	4	172	4	RBM6	3	50005024	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1286125	50005024	148017406	220	116142											
VPRBP	9730	broad.mit.edu	37	chr3	51451366	51451366	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattaagtgaaggggtagagCaaaaggaaagagaataatga	13	1	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51451366	T	T	51451366	1	4	129	0	1	0	0	0	0	0	0	0	17312	725	25	4		4	VPRBP	3	51451366	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1446342	51451366	146571064	221	116143											
SEMA3G	56920	broad.mit.edu	37	chr3	52474799	52474799	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaacagcgcgtacacctcGaggctcttcccggccttggg	12	15	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52474799	T	T	52474799	2	4	129	1	0	0	0	0	0	0	0	1	14143	1045	37	3		3	SEMA3G	3	52474799	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1023433	52474799	145547631	222	116144											
STAB1	23166	broad.mit.edu	37	chr3	52550187	52550187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggggagtgccactgccaCgagggcttccatggaacggc	16	12	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52550187	A	A	52550187	3	1	129	1	0	0	0	0	1	0	0	0	15355	535	19	3	4227	3	STAB1	3	52550187	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	75388	52550187	145472243	223	116145											
STAB1	23166	broad.mit.edu	37	chr3	52550345	52550345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatggaggcactgggcaaCtcctatcctcctttatacca	9	12	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52550345	A	A	52550345	1	1	129	0	1	0	0	0	0	0	0	0	15355	580	20	3		3	STAB1	3	52550345	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	158	52550345	145472085	224	116146											
CACNA1D	776	broad.mit.edu	37	chr3	53777182	53777182	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcccagaattgttgggcTgaatggtttatgtaagggat	14	4	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53777182	G	G	53777182	1	3	129	0	1	0	0	0	0	0	0	0	2567	1595	55	5		5	CACNA1D	3	53777182	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1226837	53777182	144245248	225	116147											
ARHGEF3	50650	broad.mit.edu	37	chr3	56771215	56771215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggagtaactacttaccaCgccccgattgttcttcagtt	8	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56771215	A	A	56771215	3	1	129	1	0	0	0	0	1	0	0	0	906	536	19	3	553	3	ARHGEF3	3	56771215	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2994033	56771215	141251215	226	116148											
CADPS	8618	broad.mit.edu	37	chr3	62477974	62477974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatacatacagtcagtacGgagaaaatcattcagcagct	8	8	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62477974	T	T	62477974	3	4	129	1	0	0	0	0	1	0	0	0	2596	1116	39	1	1230	1	CADPS	3	62477974	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5706759	62477974	135544456	227	116149											
FRMD4B	23150	broad.mit.edu	37	chr3	69225535	69225535	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaaactttatttaccaaAacagatggcagctggagttg	9	6	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69225535	C	C	69225535	1	2	129	0	1	0	0	0	0	0	0	0	6112	29	1	5		5	FRMD4B	3	69225535	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	6747561	69225535	128796895	228	116150											
CNTN3	5067	broad.mit.edu	37	chr3	74334570	74334570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggccccgtagtctggCtgatgtctcatttcctgcca	9	14	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74334570	A	A	74334570	3	1	129	1	0	0	0	0	1	0	0	0	3674	797	28	3	512	3	CNTN3	3	74334570	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	5109035	74334570	123687860	229	116151											
ABI3BP	25890	broad.mit.edu	37	chr3	100566523	100566523	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacttgtggttctttctggtGatggaaaggaaaaaaatatt	10	4	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100566523	A	A	100566523	1	1	129	0	1	0	0	0	0	0	0	0	91	1305	45	4		4	ABI3BP	3	100566523	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	26231953	100566523	97455907	230	116152											
CD86	942	broad.mit.edu	37	chr3	121825068	121825068	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttcagtcaacctgaaataGtaccaatttctaatataaca	3	9	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121825068	A	A	121825068	3	1	129	1	0	0	0	0	1	0	0	0	3073	1029	36	4	438	4	CD86	3	121825068	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	21258545	121825068	76197362	231	116153											
KALRN	8997	broad.mit.edu	37	chr3	124201673	124201673	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagatacaacagcggcatGgtctggccaactccatctct	10	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124201673	A	A	124201673	3	1	129	1	0	0	0	0	1	0	0	0	8045	1348	47	4	4314	4	KALRN	3	124201673	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2376605	124201673	73820757	232	116154											
UROC1	131669	broad.mit.edu	37	chr3	126201093	126201093	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatgtgcgagaagtgcaGgtagtgcgggtgtgcaggaa	20	4	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126201093	T	T	126201093	1	4	129	0	1	0	0	0	0	0	0	0	17154	1015	35	2		2	UROC1	3	126201093	3'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	1999420	126201093	71821337	233	116155											
SEC61A1	29927	broad.mit.edu	37	chr3	127788410	127788410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccattgggtctggaaccGggatcctgctcgcagtcaca	13	13	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127788410	T	T	127788410	3	4	129	1	0	0	0	0	1	0	0	0	14113	1116	39	1	1382	1	SEC61A1	3	127788410	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1587317	127788410	70234020	234	116156											
KY	339855	broad.mit.edu	37	chr3	134362143	134362143	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggggaggtcacggctagCggcgaatcacttaccttggc	15	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134362143	T	T	134362143	1	4	129	0	1	0	0	0	0	0	0	0	8658	783	27	4		4	KY	3	134362143	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	6573733	134362143	63660287	235	116157											
EPHB1	2047	broad.mit.edu	37	chr3	134880876	134880876	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaggaacacaatgagttcaActcctccatggccaggagtc	9	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134880876	G	G	134880876	3	3	129	1	0	0	0	0	1	0	0	0	5216	43	2	5	1465	5	EPHB1	3	134880876	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	518733	134880876	63141554	236	116158											
GRK7	131890	broad.mit.edu	37	chr3	141535733	141535733	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggaatttgatgacaaagaTaagcagttcttcaaaaactt	8	5	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141535733	C	C	141535733	2	2	129	1	0	0	0	0	0	0	0	1	6860	1403	49	5		5	GRK7	3	141535733	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	6654857	141535733	56486697	237	116159											
PLS1	5357	broad.mit.edu	37	chr3	142402828	142402828	+	Intron	DEL	T	-	-													aaggacttcctcatgtgtacTtttttttttggcaattcagg							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142402828	-	-	142402828	6	5	129	0	1	1	0	1	0	0	0	0	12202	1624	56	0		0	PLS1	3	142402828	Intron	DEL	T	TCGA-44-6777-01A-11D-1855-08	867095	142402828	55619602	238	116160											
PCOLCE2	26577	broad.mit.edu	37	chr3	142542291	142542291	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgttattgacccttcaccatAaattcataggaattcctttg	5	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142542291	G	G	142542291	1	3	129	0	1	0	0	0	0	0	0	0	11689	377	13	5		5	PCOLCE2	3	142542291	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	139463	142542291	55480139	239	116161											
HLTF	6596	broad.mit.edu	37	chr3	148786164	148786164	+	Intron	SNP	C	A	A													taaatggtcagattgtgaaaCccagttcaccagaaaaacgt							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148786164	A	A	148786164	1	1	129	0	1	0	0	0	0	0	0	0	7282	522	18	3		3	HLTF	3	148786164	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	6243873	148786164	49236266	240	116162	507	2									
HLTF	6596	broad.mit.edu	37	chr3	148786166	148786166	+	Intron	SNP	C	T	T													aatggtcagattgtgaaaccCagttcaccagaaaaacgttc							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148786166	T	T	148786166	1	4	129	0	1	0	0	0	0	0	0	0	7282	609	21	4		4	HLTF	3	148786166	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2	148786166	49236264	241	116163	507	2									
MED12L	116931	broad.mit.edu	37	chr3	150932193	150932193	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaagacatttgctgagtaAtaaggcaaagggcaatgaat	10	6	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150932193	T	T	150932193	1	4	129	0	1	0	0	0	0	0	0	0	9522	116	4	5		5	MED12L	3	150932193	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	2146027	150932193	47090237	242	116164											
SGEF	26084	broad.mit.edu	37	chr3	153958135	153958135	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctgctgaataattgacgTgttcttttccctttccttta	5	9	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153958135	G	G	153958135	1	3	129	0	1	0	0	0	0	0	0	0	14318	1711	59	5		5	SGEF	3	153958135	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	3025942	153958135	44064295	243	116165											
LEKR1	389170	broad.mit.edu	37	chr3	156695347	156695347	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattggtggataactcaaagGaagcagaggatacacagatg	12	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156695347	A	A	156695347	1	1	129	0	1	0	0	0	0	0	0	0	8789	1189	41	4		4	LEKR1	3	156695347	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2737212	156695347	41327083	244	116166											
IL12A	3592	broad.mit.edu	37	chr3	159710928	159710928	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggtataaaggattttcCtcccagagcatgcagtgtgg	11	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159710928	T	T	159710928	1	4	129	0	1	0	0	0	0	0	0	0	7694	696	24	4		4	IL12A	3	159710928	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3015581	159710928	38311502	245	116167											
TNIK	23043	broad.mit.edu	37	chr3	170819320	170819320	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctcttcctcgctactttCtgactcctcactggaggagg	8	15	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170819320	T	T	170819320	3	4	129	1	0	0	0	0	1	0	0	0	16436	922	32	4	1621	4	TNIK	3	170819320	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	11108392	170819320	27203110	246	116168											
ECT2	1894	broad.mit.edu	37	chr3	172500075	172500075	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaatatgatctcatcaaGgactggcaaggagtgtaatt	9	5	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172500075	A	A	172500075	1	1	129	0	1	0	0	0	0	0	0	0	4941	1015	35	4		4	ECT2	3	172500075	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1680755	172500075	25522355	247	116169											
SPATA16	83893	broad.mit.edu	37	chr3	172766664	172766664	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgaaataagatggaaggtGatcaggcaagctcagatagt	12	4	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172766664	C	C	172766664	1	2	129	0	1	0	0	0	0	0	0	0	15117	1305	45	4		4	SPATA16	3	172766664	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	266589	172766664	25255766	248	116170											
ZMAT3	64393	broad.mit.edu	37	chr3	178785371	178785371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggcacagtcttgctccCctcccttcgataactcttct	6	17	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178785371	A	A	178785371	3	1	129	1	0	0	0	0	1	0	0	0	17819	623	22	2	719	2	ZMAT3	3	178785371	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6018707	178785371	19237059	249	116171											
KLHL6	89857	broad.mit.edu	37	chr3	183211915	183211915	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggtctccacattgttgatTctctgtaagccgtcaaagcc	8	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183211915	A	A	183211915	3	1	129	1	0	0	0	0	1	0	0	0	8464	1780	62	5	575	5	KLHL6	3	183211915	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	4426544	183211915	14810515	250	116172											
POLR2H	5437	broad.mit.edu	37	chr3	184084505	184084505	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgctattgctccatagGgctgaccagtttgagtatgt	11	8	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184084505	T	T	184084505	3	4	129	1	0	0	0	0	1	0	0	0	12316	1246	43	2	266	2	POLR2H	3	184084505	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	872590	184084505	13937925	251	116173											
MAGEF1	64110	broad.mit.edu	37	chr3	184428505	184428505	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaaaaagtagaccaatctCatttacaaacagcattttaa	5	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184428505	T	T	184428505	1	4	129	0	1	0	0	0	0	0	0	0	9279	841	29	4		4	MAGEF1	3	184428505	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	344000	184428505	13593925	252	116174											
TP63	8626	broad.mit.edu	37	chr3	189612133	189612133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctctacagtcagtgtgGgctccagtgagacccggggt	15	11	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189612133	T	T	189612133	3	4	129	1	0	0	0	0	1	0	0	0	16516	1232	43	2	2104	2	TP63	3	189612133	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5183628	189612133	8410297	253	116175											
UTS2D	257313	broad.mit.edu	37	chr3	190993124	190993124	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccactagctgttcttttAgcttttccagctgataaaat	5	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190993124	G	G	190993124	3	3	129	1	0	0	0	0	1	0	0	0	17232	420	15	5	116	5	UTS2D	3	190993124	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1380991	190993124	7029306	254	116176											
GP5	2814	broad.mit.edu	37	chr3	194118856	194118856	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgaagagcaggatgtgcgtGaggttggtgggcaggcctag	19	7	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	194118856	C	C	194118856	2	2	129	1	0	0	0	0	0	0	0	1	6648	1277	45	4		4	GP5	3	194118856	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	3125732	194118856	3903574	255	116177											
FYTTD1	84248	broad.mit.edu	37	chr3	197483438	197483438	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagaattctggtaagttttGaaagtaagctttaatggaaa	9	3	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197483438	C	C	197483438	1	2	129	0	1	0	0	0	0	0	0	0	6187	1305	45	4		4	FYTTD1	3	197483438	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3364582	197483438	538992	256	116178											
LRCH3	84859	broad.mit.edu	37	chr3	197547131	197547131	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaacatatctaattttataGacagtttaaagcagacaagt	5	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197547131	C	C	197547131	1	2	129	0	1	0	0	0	0	0	0	0	9021	957	33	4		4	LRCH3	3	197547131	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	63693	197547131	475299	257	116179											
JAKMIP1	152789	broad.mit.edu	37	chr4	6083539	6083539	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacgacggacggccgaggtCacagcaccgaggtgagcaga	16	11	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6083539	A	A	6083539	1	1	129	0	1	0	0	0	0	0	0	0	8010	841	29	3		3	JAKMIP1	4	6083539	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08		6083539	185070737	258	116180											
CPZ	8532	broad.mit.edu	37	chr4	8608444	8608444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgaccccacccagtcgGgggttggccatgttttcagg	14	12	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8608444	A	A	8608444	1	1	129	0	1	0	0	0	0	0	0	0	3871	1247	43	4		4	CPZ	4	8608444	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2524905	8608444	182545832	259	116181											
NCAPG	64151	broad.mit.edu	37	chr4	17827081	17827081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttacaggattttaatcGggcatcagaattaaaagaag	8	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17827081	T	T	17827081	3	4	129	1	0	0	0	0	1	0	0	0	10302	1116	39	1	1592	1	NCAPG	4	17827081	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	9218637	17827081	173327195	260	116182											
TLR1	7096	broad.mit.edu	37	chr4	38799759	38799759	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgccagaatacttaggaagtAagaacatttgttatcttcta	7	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38799759	G	G	38799759	3	3	129	1	0	0	0	0	1	0	0	0	16072	362	13	5	1670	5	TLR1	4	38799759	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	20972678	38799759	152354517	261	116183											
FAM114A1	92689	broad.mit.edu	37	chr4	38893400	38893400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtggaggaggatgggcaGgctggggatcctggggcaaa	20	6	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38893400	T	T	38893400	3	4	129	1	0	0	0	0	1	0	0	0	5449	1000	35	2	391	2	FAM114A1	4	38893400	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	93641	38893400	152260876	262	116184											
LRRC66	339977	broad.mit.edu	37	chr4	52861433	52861433	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcattttacagagggaagcTgttatttctccggagaggga	13	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52861433	A	A	52861433	2	1	129	1	0	0	0	0	0	0	0	1	9105	1567	55	5		5	LRRC66	4	52861433	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	13968033	52861433	138292843	263	116185											
KIAA1211	57482	broad.mit.edu	37	chr4	57182101	57182101	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccctccgcagaaagtggtGgcccacacagagttcacgac	10	14	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57182101	T	T	57182101	2	4	129	1	0	0	0	0	0	0	0	1	8285	1335	47	2		2	KIAA1211	4	57182101	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	4320668	57182101	133972175	264	116186											
UGT2B15	7366	broad.mit.edu	37	chr4	69512760	69512760	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatcctccatttaaaaccctCcatgctgaaataaaggagga	6	10	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69512760	T	T	69512760	1	4	129	0	1	0	0	0	0	0	0	0	17084	870	30	4		4	UGT2B15	4	69512760	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	12330659	69512760	121641516	265	116187											
UGT2B7	7364	broad.mit.edu	37	chr4	69962775	69962775	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcttctctcctggctacacTtttgaaaagcatagtggagg	10	9	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69962775	A	A	69962775	2	1	129	1	0	0	0	0	0	0	0	1	17088	1596	56	5		5	UGT2B7	4	69962775	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	450015	69962775	121191501	266	116188											
UGT2B28	54490	broad.mit.edu	37	chr4	70155482	70155482	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accttctaggtaacactctgGtgaacaaatactggatatat	7	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70155482	C	C	70155482	1	2	129	0	1	0	0	0	0	0	0	0	17086	1276	44	4		4	UGT2B28	4	70155482	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	192707	70155482	120998794	267	116189											
ODAM	54959	broad.mit.edu	37	chr4	71062448	71062448	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctgccagcaatagcaatGaggttagtttaaataattaa	8	5	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71062448	A	A	71062448	3	1	129	1	0	0	0	0	1	0	0	0	10919	1291	45	4	97	4	ODAM	4	71062448	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	906966	71062448	120091828	268	116190											
SLC4A4	8671	broad.mit.edu	37	chr4	72319139	72319139	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatgttgtgtttgatttaAtgagttacctcttgattaat	7	3	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72319139	G	G	72319139	1	3	129	0	1	0	0	0	0	0	0	0	14770	116	4	5		5	SLC4A4	4	72319139	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	1256691	72319139	118835137	269	116191											
CCDC158	339965	broad.mit.edu	37	chr4	77300479	77300479	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttggcttcccttaattcAgaacgtagctgagaaacagt	8	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77300479	G	G	77300479	2	3	129	1	0	0	0	0	0	0	0	1	2817	175	7	5		5	CCDC158	4	77300479	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	4981340	77300479	113853797	270	116192											
FRAS1	80144	broad.mit.edu	37	chr4	79301110	79301110	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttagctggaaagatgtgaacGagaagaaagtgcgttttgtg	14	3	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79301110	T	T	79301110	4	4	129	1	0	0	0	0	0	1	0	0	6102	1059	37	3	3629	3	FRAS1	4	79301110	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2000631	79301110	111853166	271	116193											
SEC31A	22872	broad.mit.edu	37	chr4	83791564	83791564	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgccatgctccaagcaaTtgccaaaatccccctataaa	4	14	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83791564	C	C	83791564	3	2	129	1	0	0	0	0	1	0	0	0	14111	1493	52	5	2946	5	SEC31A	4	83791564	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	4490454	83791564	107362712	272	116194											
LIN54	132660	broad.mit.edu	37	chr4	83891405	83891405	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgtactaaaattgaagTatctgaagtgactagtaaga	10	3	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83891405	C	C	83891405	1	2	129	0	1	0	0	0	0	0	0	0	8882	1653	57	5		5	LIN54	4	83891405	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	99841	83891405	107262871	273	116195											
PTPN13	5783	broad.mit.edu	37	chr4	87683877	87683877	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgatggattttgactttTagtgccttctactcctgtgc	8	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87683877	C	C	87683877	1	2	129	0	1	0	0	0	0	0	0	0	12888	1769	61	5		5	PTPN13	4	87683877	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	3792472	87683877	103470399	274	116196											
MEPE	56955	broad.mit.edu	37	chr4	88767710	88767710	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagaggatagagtgaagaActgagtgagccaagaatcct	13	5	0	7			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88767710	G	G	88767710	1	3	129	0	1	0	0	0	0	0	0	0	9571	58	2	5		5	MEPE	4	88767710	3'UTR	SNP	A	TCGA-44-6777-01A-11D-1855-08	1083833	88767710	102386566	275	116197											
HERC6	55008	broad.mit.edu	37	chr4	89326274	89326274	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaccatgattctcttctAcagcctcttagtgtgactag	7	10	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89326274	G	G	89326274	1	3	129	0	1	0	0	0	0	0	0	0	7129	406	14	5		5	HERC6	4	89326274	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	558564	89326274	101828002	276	116198											
FAM190A	401145	broad.mit.edu	37	chr4	91389343	91389343	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatgtgagactagttcatAaataattttgacatttacaa	7	4	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91389343	T	T	91389343	1	4	129	0	1	0	0	0	0	0	0	0	5568	377	13	5		5	FAM190A	4	91389343	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	2063069	91389343	99764933	277	116199											
FAM190A	401145	broad.mit.edu	37	chr4	91701601	91701601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttttacagaccacataCcctagggaattctgaaaacc	6	10	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91701601	A	A	91701601	1	1	129	0	1	0	0	0	0	0	0	0	5568	518	18	3		3	FAM190A	4	91701601	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	312258	91701601	99452675	278	116200											
GRID2	2895	broad.mit.edu	37	chr4	94690553	94690553	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcttcatagccatgctGgagacgtggtggaacaagag	13	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94690553	A	A	94690553	2	1	129	1	0	0	0	0	0	0	0	1	6838	1335	47	4		4	GRID2	4	94690553	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	2988952	94690553	96463723	279	116201											
PDLIM5	10611	broad.mit.edu	37	chr4	95578763	95578763	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacattaacccttatattActataaagctcaagaaaata	2	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95578763	G	G	95578763	1	3	129	0	1	0	0	0	0	0	0	0	11777	406	14	5		5	PDLIM5	4	95578763	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	888210	95578763	95575513	280	116202											
C4orf37	285555	broad.mit.edu	37	chr4	98902433	98902433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaggttcattatatgtgcCaggagccggggtgattgatt	14	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98902433	A	A	98902433	3	1	129	1	0	0	0	0	1	0	0	0	2290	594	21	2	754	2	C4orf37	4	98902433	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3323670	98902433	92251843	281	116203											
SGMS2	166929	broad.mit.edu	37	chr4	108817064	108817064	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactcccagacaagttttttGattacattgatagggtgaaa	8	7	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108817064	T	T	108817064	3	4	129	1	0	0	0	0	1	0	0	0	14328	1290	45	3	357	3	SGMS2	4	108817064	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	9914631	108817064	82337212	282	116204											
HADH	3033	broad.mit.edu	37	chr4	108948874	108948875	+	Frame_Shift_Ins	INS	-	T	T													gtttattgtgaaccgcctccINStggttccatacctcatggaa							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108948875	T	T	108948874	7	5	129	1	0	1	1	0	0	0	0	0	7008	680	24	0	689	0	HADH	4	108948874	Frame_Shift_Ins	INS	-	TCGA-44-6777-01A-11D-1855-08	131810	108948874	82205402	283	116205											
METTL14	57721	broad.mit.edu	37	chr4	119631390	119631390	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaaatagatctaacttccGaggagaaagaggtggcttta	11	5	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119631390	A	A	119631390	3	1	129	1	0	0	0	0	1	0	0	0	9591	1058	37	4	1346	4	METTL14	4	119631390	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	10682516	119631390	71522886	284	116206											
KIAA1109	84162	broad.mit.edu	37	chr4	123234842	123234842	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaggacaagcagcagctGgtaggttcacatgcagcatt	11	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123234842	T	T	123234842	4	4	129	1	0	0	0	0	0	1	0	0	8278	1362	47	2	10542	2	KIAA1109	4	123234842	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3603452	123234842	67919434	285	116207											
FAT4	79633	broad.mit.edu	37	chr4	126242659	126242659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccgcagccattctggaccGggagcaaggagcatgtcttt	13	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126242659	T	T	126242659	3	4	129	1	0	0	0	0	1	0	0	0	5749	1116	39	1	5095	1	FAT4	4	126242659	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3007817	126242659	64911617	286	116208											
FAT4	79633	broad.mit.edu	37	chr4	126242685	126242685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagcatgtctttacctgGtggatgtttatgccatagaa	11	6	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126242685	T	T	126242685	3	4	129	1	0	0	0	0	1	0	0	0	5749	1261	44	3	5121	3	FAT4	4	126242685	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	26	126242685	64911591	287	116209											
SCLT1	132320	broad.mit.edu	37	chr4	129812124	129812124	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattgttatttccaagtagaGaaataatttggatttggctc	8	4	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129812124	C	C	129812124	1	2	129	0	1	0	0	0	0	0	0	0	14019	957	33	4		4	SCLT1	4	129812124	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3569439	129812124	61342152	288	116210											
INPP4B	8821	broad.mit.edu	37	chr4	143045852	143045852	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgcttggctcggttcacCacttctcccatgcagtcctt	8	15	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143045852	T	T	143045852	2	4	129	1	0	0	0	0	0	0	0	1	7823	581	21	4		4	INPP4B	4	143045852	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	13233728	143045852	48108424	289	116211											
MAB21L2	10586	broad.mit.edu	37	chr4	151504238	151504238	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aataagtactacactgagcgCtgtcaggcgcgcaaggcggc	13	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151504238	G	G	151504238	2	3	129	1	0	0	0	0	0	0	0	1	9230	784	28	4		4	MAB21L2	4	151504238	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	8458386	151504238	39650038	290	116212											
DCHS2	54798	broad.mit.edu	37	chr4	155236879	155236879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaagcattaaatacccaGtttctgtatttctaaattac	3	7	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155236879	T	T	155236879	1	4	129	0	1	0	0	0	0	0	0	0	4321	1044	36	3		3	DCHS2	4	155236879	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3732641	155236879	35917397	291	116213											
MAP9	79884	broad.mit.edu	37	chr4	156273864	156273864	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccttttgcttgaaaaaagCttcctttttttcattcctat	3	9	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156273864	G	G	156273864	3	3	129	1	0	0	0	0	1	0	0	0	9362	797	28	4	246	4	MAP9	4	156273864	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1036985	156273864	34880412	292	116214											
MAP9	79884	broad.mit.edu	37	chr4	156281611	156281611	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaaaacccccttctgaatTaataaggtaaatacttgatt	4	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156281611	C	C	156281611	1	2	129	0	1	0	0	0	0	0	0	0	9362	1769	61	5		5	MAP9	4	156281611	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	7747	156281611	34872665	293	116215											
GUCY1A3	2982	broad.mit.edu	37	chr4	156618236	156618236	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagccgagtctatcttcacActttggcagagagtatttgc	11	9	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156618236	G	G	156618236	3	3	129	1	0	0	0	0	1	0	0	0	6959	159	6	5	219	5	GUCY1A3	4	156618236	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	336625	156618236	34536040	294	116216											
FSTL5	56884	broad.mit.edu	37	chr4	162463837	162463837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggatacacccggatgaCtggaggaactaaaggaaaaa	11	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162463837	A	A	162463837	3	1	129	1	0	0	0	0	1	0	0	0	6140	565	20	3	1551	3	FSTL5	4	162463837	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	5845601	162463837	28690439	295	116217											
TKTL2	84076	broad.mit.edu	37	chr4	164392983	164392983	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggccaaagccaatagacttGactttttagaaataagccta	8	8	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164392983	A	A	164392983	1	1	129	0	1	0	0	0	0	0	0	0	16059	1305	45	4		4	TKTL2	4	164392983	3'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	1929146	164392983	26761293	296	116218											
PALLD	23022	broad.mit.edu	37	chr4	169845414	169845414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttttcttagctaaagaaGcacacaaaccccctgtgttt	6	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169845414	T	T	169845414	3	4	129	1	0	0	0	0	1	0	0	0	11501	971	34	3	3644	3	PALLD	4	169845414	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5452431	169845414	21308862	297	116219											
GLRA3	8001	broad.mit.edu	37	chr4	175649605	175649605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctatttcactgaaatcggCaatttaagtccacgactcac	5	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175649605	A	A	175649605	1	1	129	0	1	0	0	0	0	0	0	0	6520	725	25	3		3	GLRA3	4	175649605	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	5804191	175649605	15504671	298	116220											
AGA	175	broad.mit.edu	37	chr4	178361559	178361559	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcatccagggcagagcctCcagatgctaatgccctccac	9	16	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178361559	T	T	178361559	3	4	129	1	0	0	0	0	1	0	0	0	365	855	30	4	923	4	AGA	4	178361559	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2711954	178361559	12792717	299	116221											
PLEKHG4B	153478	broad.mit.edu	37	chr5	143043	143043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgggacaagttttctcGgaaccccctactttcatgcg	9	12	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143043	T	T	143043	1	4	129	0	1	0	0	0	0	0	0	0	12167	1131	39	1		1	PLEKHG4B	5	143043	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08		143043	180772217	300	116222											
LPCAT1	79888	broad.mit.edu	37	chr5	1494959	1494959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgcctgccgccccttcaCggccacccggtggaagccgc	12	20	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1494959	A	A	1494959	3	1	129	1	0	0	0	0	1	0	0	0	8997	536	19	3	1303	3	LPCAT1	5	1494959	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1351916	1494959	179420301	301	116223											
IRX1	79192	broad.mit.edu	37	chr5	3599846	3599846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagccccttctgctcttGcccgggaccaaggctcgccg	11	19	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3599846	T	T	3599846	3	4	129	1	0	0	0	0	1	0	0	0	7913	1319	46	3	790	3	IRX1	5	3599846	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2104887	3599846	177315414	302	116224											
NSUN2	54888	broad.mit.edu	37	chr5	6620481	6620481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcctgaaatatgcgacCtccaaaggtcagccagtgag	9	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6620481	A	A	6620481	1	1	129	0	1	0	0	0	0	0	0	0	10773	696	24	2		2	NSUN2	5	6620481	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3020635	6620481	174294779	303	116225											
ADCY2	108	broad.mit.edu	37	chr5	7789797	7789797	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttcttatggaagaacaaaTtcaaaaaagagcgggaggag	11	5	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7789797	A	A	7789797	3	1	129	1	0	0	0	0	1	0	0	0	294	1493	52	5	2590	5	ADCY2	5	7789797	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	1169316	7789797	173125463	304	116226											
DNAH5	1767	broad.mit.edu	37	chr5	13737491	13737491	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagactttcatcttctacCagggacccctgggtacttgt	9	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13737491	A	A	13737491	2	1	129	1	0	0	0	0	0	0	0	1	4644	581	21	2		2	DNAH5	5	13737491	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	5947694	13737491	167177769	305	116227											
DNAH5	1767	broad.mit.edu	37	chr5	13769343	13769343	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttgattttgttcacttAcccagttttgttgttttttt	6	5	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13769343	T	T	13769343	1	4	129	0	1	0	0	0	0	0	0	0	4644	406	14	5		5	DNAH5	5	13769343	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	31852	13769343	167145917	306	116228											
DNAH5	1767	broad.mit.edu	37	chr5	13830679	13830679	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaccttggctgcaatttctCaccagattaaaaaatataac	4	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13830679	T	T	13830679	1	4	129	0	1	0	0	0	0	0	0	0	4644	841	29	4		4	DNAH5	5	13830679	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	61336	13830679	167084581	307	116229											
TRIO	7204	broad.mit.edu	37	chr5	14479403	14479403	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatgtacatagcttattgtCaaaataaaccaaagtctgag	6	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14479403	T	T	14479403	4	4	129	1	0	0	0	0	0	1	0	0	16677	827	29	4	6353	4	TRIO	5	14479403	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	648724	14479403	166435857	308	116230											
FBXL7	23194	broad.mit.edu	37	chr5	15500768	15500768	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtcccgggagacggcGggcatgacggctacaggatg	19	9	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15500768	T	T	15500768	1	4	129	0	1	0	0	0	0	0	0	0	5781	1131	39	1		1	FBXL7	5	15500768	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	1021365	15500768	165414492	309	116231											
CDH18	1016	broad.mit.edu	37	chr5	19473207	19473207	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatgaaaagggcacttgtTtctacaggagctgtgtccag	11	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19473207	C	C	19473207	1	2	129	0	1	0	0	0	0	0	0	0	3133	1856	64	5		5	CDH18	5	19473207	3'UTR	SNP	T	TCGA-44-6777-01A-11D-1855-08	3972439	19473207	161442053	310	116232											
CDH18	1016	broad.mit.edu	37	chr5	19747105	19747105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtccatctgtgaattttgGagcgttgtcattgatgtctt	11	6	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19747105	T	T	19747105	3	4	129	1	0	0	0	0	1	0	0	0	3133	1174	41	3	1943	3	CDH18	5	19747105	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	273898	19747105	161168155	311	116233											
CDH12	1010	broad.mit.edu	37	chr5	21854749	21854749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaatatttgaagggctgGtgataatgttgcctctaata	9	4	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21854749	T	T	21854749	1	4	129	0	1	0	0	0	0	0	0	0	3128	1276	44	3		3	CDH12	5	21854749	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2107644	21854749	159060511	312	116234											
CDH12	1010	broad.mit.edu	37	chr5	21975400	21975400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttattgcatgaatgtccCctgtggtttcatcaatggta	8	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21975400	A	A	21975400	3	1	129	1	0	0	0	0	1	0	0	0	3128	623	22	2	2098	2	CDH12	5	21975400	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	120651	21975400	158939860	313	116235											
PRDM9	56979	broad.mit.edu	37	chr5	23521304	23521304	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgggtaagaaaaaatattTgcggggactttagtccctct	10	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23521304	A	A	23521304	1	1	129	0	1	0	0	0	0	0	0	0	12569	1827	63	5		5	PRDM9	5	23521304	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1545904	23521304	157393956	314	116236											
CDH10	1008	broad.mit.edu	37	chr5	24493047	24493047	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtattagctgcagaaaaagAaaaatatatctcatcaatat	5	5	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24493047	G	G	24493047	1	3	129	0	1	0	0	0	0	0	0	0	3126	261	9	5		5	CDH10	5	24493047	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	971743	24493047	156422213	315	116237											
CDH10	1008	broad.mit.edu	37	chr5	24535743	24535743	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttttgttcttattctccCatggtctttctactgataaa	6	8	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24535743	A	A	24535743	1	1	129	0	1	0	0	0	0	0	0	0	3126	609	21	2		2	CDH10	5	24535743	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	42696	24535743	156379517	316	116238											
CDH9	1007	broad.mit.edu	37	chr5	26902655	26902655	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatactgccctcctttacatCttcatctacttctatcaagt	3	13	5	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26902655	A	A	26902655	3	1	129	1	0	0	0	0	1	0	0	0	3147	913	32	3	1210	3	CDH9	5	26902655	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2366912	26902655	154012605	317	116239											
CDH9	1007	broad.mit.edu	37	chr5	26906079	26906079	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttcttactctggggaaatCgaggagggttgttgttgaca	13	5	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26906079	T	T	26906079	3	4	129	1	0	0	0	0	1	0	0	0	3147	884	31	4	1601	4	CDH9	5	26906079	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3424	26906079	154009181	318	116240											
CDH9	1007	broad.mit.edu	37	chr5	26988490	26988490	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgtattgtttgtttttcCtaaagagtaaggagaaaaaa	8	3	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26988490	T	T	26988490	5	4	129	1	0	0	0	0	0	0	1	0	3147	695	24	4		4	CDH9	5	26988490	Splice_Site	SNP	C	TCGA-44-6777-01A-11D-1855-08	82411	26988490	153926770	319	116241											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576335	33576335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagtttcaggtggttacGgtttgccgtctttcctgagg	14	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33576335	T	T	33576335	3	4	129	1	0	0	0	0	1	0	0	0	257	1116	39	1	1012	1	ADAMTS12	5	33576335	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	6587845	33576335	147338925	320	116242											
LMBRD2	92255	broad.mit.edu	37	chr5	36142819	36142819	+	Intron	DEL	T	-	-													ttcttggctatgctttattcTtttttttttttttttctttt					rs68098184		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36142819	-	-	36142819	6	5	129	0	1	1	0	1	0	0	0	0	8917	1624	56	0		0	LMBRD2	5	36142819	Intron	DEL	T	TCGA-44-6777-01A-11D-1855-08	2566484	36142819	144772441	321	116243											
C5orf42	65250	broad.mit.edu	37	chr5	37201763	37201763	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagccgaatggcactaagCcccacagtcttttactgaag	8	12	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37201763	T	T	37201763	3	4	129	1	0	0	0	0	1	0	0	0	2324	739	26	4	6292	4	C5orf42	5	37201763	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1058944	37201763	143713497	322	116244											
EGFLAM	133584	broad.mit.edu	37	chr5	38426958	38426958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccacccatgttctactGgccagaattcagtcacacca	5	15	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38426958	T	T	38426958	1	4	129	0	1	0	0	0	0	0	0	0	5006	1363	47	2		2	EGFLAM	5	38426958	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1225195	38426958	142488302	323	116245											
EGFLAM	133584	broad.mit.edu	37	chr5	38464232	38464232	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtacacactgatgagaaaCtgagaaccaagacaggcatc	9	9	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38464232	A	A	38464232	1	1	129	0	1	0	0	0	0	0	0	0	5006	580	20	3		3	EGFLAM	5	38464232	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	37274	38464232	142451028	324	116246											
LIFR	3977	broad.mit.edu	37	chr5	38506580	38506580	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caacgtactccttgccatctGacatcttttcccagttatca	4	14	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38506580	C	C	38506580	1	2	129	0	1	0	0	0	0	0	0	0	8852	1305	45	4		4	LIFR	5	38506580	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	42348	38506580	142408680	325	116247											
RICTOR	253260	broad.mit.edu	37	chr5	38959970	38959970	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtagtgttgactaagGgtggtcaataaaccattatt	9	4	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38959970	A	A	38959970	2	1	129	1	0	0	0	0	0	0	0	1	13467	1219	43	4		4	RICTOR	5	38959970	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	453390	38959970	141955290	326	116248											
FYB	2533	broad.mit.edu	37	chr5	39202316	39202316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaatctcccctgcatgGtctttattttctgagtcttc	6	11	4	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39202316	T	T	39202316	3	4	129	1	0	0	0	0	1	0	0	0	6184	1252	44	3	1814	3	FYB	5	39202316	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	242346	39202316	141712944	327	116249											
PTGER4	5734	broad.mit.edu	37	chr5	40692076	40692076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccgcattggcgggtccCgcagggagcgctccggacag	16	14	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40692076	A	A	40692076	3	1	129	1	0	0	0	0	1	0	0	0	12851	652	23	1	1069	1	PTGER4	5	40692076	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1489760	40692076	140223184	328	116250											
PLCXD3	345557	broad.mit.edu	37	chr5	41382556	41382556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagttccaaacacagagaCaaaattctggacagtttctg	7	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41382556	A	A	41382556	3	1	129	1	0	0	0	0	1	0	0	0	12138	478	17	3	789	3	PLCXD3	5	41382556	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	690480	41382556	139532704	329	116251											
ISL1	3670	broad.mit.edu	37	chr5	50689501	50689501	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagtgggaaattataatgtCgaactctgaaacaaaagtat	8	4	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50689501	G	G	50689501	1	3	129	0	1	0	0	0	0	0	0	0	7926	899	31	4		4	ISL1	5	50689501	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	9306945	50689501	130225759	330	116252											
ITGA1	3672	broad.mit.edu	37	chr5	52145269	52145269	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttcagcggcccggtggaAgacatgtttggatatactgt	12	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52145269	T	T	52145269	3	4	129	1	0	0	0	0	1	0	0	0	7942	69	3	5	138	5	ITGA1	5	52145269	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1455768	52145269	128769991	331	116253											
ITGA2	3673	broad.mit.edu	37	chr5	52369034	52369034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggaaagtgcatacaacaCtggaattgttgttgattttt	10	4	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52369034	A	A	52369034	3	1	129	1	0	0	0	0	1	0	0	0	7945	565	20	3	2594	3	ITGA2	5	52369034	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	223765	52369034	128546226	332	116254											
CDC20B	166979	broad.mit.edu	37	chr5	54415705	54415705	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggagtaccttgaccagtTgcaatctcctttgtcttagg	10	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54415705	G	G	54415705	2	3	129	1	0	0	0	0	0	0	0	1	3090	1799	63	5		5	CDC20B	5	54415705	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	2046671	54415705	126499555	333	116255											
DHX29	54505	broad.mit.edu	37	chr5	54573088	54573088	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agataattagtaggaagtctGactggacacttctttcatga	9	6	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54573088	C	C	54573088	4	2	129	1	0	0	0	0	0	1	0	0	4543	1294	45	4	2037	4	DHX29	5	54573088	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	157383	54573088	126342172	334	116256											
MAP3K1	4214	broad.mit.edu	37	chr5	56160759	56160759	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accgggtgtttattgggcctCaggtaggattcgtcaccatt	12	9	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56160759	T	T	56160759	4	4	129	1	0	0	0	0	0	1	0	0	9335	827	29	4	1047	4	MAP3K1	5	56160759	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1587671	56160759	124754501	335	116257											
RNF180	285671	broad.mit.edu	37	chr5	63507852	63507852	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacctgtgaaataaattctGaactggtaattagtaatatc	6	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63507852	T	T	63507852	1	4	129	0	1	0	0	0	0	0	0	0	13575	1305	45	3		3	RNF180	5	63507852	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7347093	63507852	117407408	336	116258											
TRIM23	373	broad.mit.edu	37	chr5	64887114	64887114	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatatgtagtttggattctAtttcattaagcaactgtcat	6	5	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64887114	G	G	64887114	1	3	129	0	1	0	0	0	0	0	0	0	16621	464	16	5		5	TRIM23	5	64887114	3'UTR	SNP	A	TCGA-44-6777-01A-11D-1855-08	1379262	64887114	116028146	337	116259											
MRPS36	92259	broad.mit.edu	37	chr5	68524875	68524875	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaattgatatgagtacccaaa							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68524875	-	-	68524875	6	5	129	0	1	1	0	1	0	0	0	0	9939	957	33	0		0	MRPS36	5	68524875	Intron	DEL	G	TCGA-44-6777-01A-11D-1855-08	3637761	68524875	112390385	338	116260											
HAPLN1	1404	broad.mit.edu	37	chr5	82940367	82940367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccagcccgccccgccagGcgtcgtacagctggtcgaag	13	16	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82940367	T	T	82940367	3	4	129	1	0	0	0	0	1	0	0	0	7020	1203	42	3	482	3	HAPLN1	5	82940367	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	14415492	82940367	97974893	339	116261											
WDR36	134430	broad.mit.edu	37	chr5	110459809	110459809	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgtttttgtttaagtctAaagtggtaaatcttggagtt	9	2	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110459809	G	G	110459809	3	3	129	1	0	0	0	0	1	0	0	0	17417	363	13	5	2522	5	WDR36	5	110459809	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	27519442	110459809	70455451	340	116262											
CAMK4	814	broad.mit.edu	37	chr5	110560283	110560283	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgtcccggattactggatCgacggctccaacagggatgc	12	13	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110560283	A	A	110560283	2	1	129	1	0	0	0	0	0	0	0	1	2631	874	31	3		3	CAMK4	5	110560283	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	100474	110560283	70354977	341	116263											
KCNN2	3781	broad.mit.edu	37	chr5	113698885	113698885	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagcggctcagcgactacgCgctcatcttcggcatgttcg	11	14	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113698885	T	T	113698885	3	4	129	1	0	0	0	0	1	0	0	0	8149	768	27	4	415	4	KCNN2	5	113698885	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3138602	113698885	67216375	342	116264											
SNCAIP	9627	broad.mit.edu	37	chr5	121786248	121786248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaccatcctcacctgcctCcagaaagtcccagtggaaat	6	15	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121786248	T	T	121786248	3	4	129	1	0	0	0	0	1	0	0	0	14955	855	30	4	1740	4	SNCAIP	5	121786248	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	8087363	121786248	59129012	343	116265											
FBN2	2201	broad.mit.edu	37	chr5	127641188	127641188	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcagtgccaaagaatgagtCagcctctttcttacctacac	6	13	4	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127641188	T	T	127641188	1	4	129	0	1	0	0	0	0	0	0	0	5760	841	29	4		4	FBN2	5	127641188	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	5854940	127641188	53274072	344	116266											
CDKL3	51265	broad.mit.edu	37	chr5	133702187	133702187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtaacttccctctcccaCttttccaagggtttcataca	4	15	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133702187	A	A	133702187	3	1	129	1	0	0	0	0	1	0	0	0	3185	565	20	3	1802	3	CDKL3	5	133702187	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6060999	133702187	47213073	345	116267											
DDX46	9879	broad.mit.edu	37	chr5	134147115	134147115	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaccttgattatttaattCttggaaatcttttatttaac	3	5	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134147115	T	T	134147115	1	4	129	0	1	0	0	0	0	0	0	0	4397	928	32	4		4	DDX46	5	134147115	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	444928	134147115	46768145	346	116268											
DDX46	9879	broad.mit.edu	37	chr5	134147433	134147433	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggttctctggtaagggattCaagtttgatgaaacagaaca	12	5	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134147433	T	T	134147433	2	4	129	1	0	0	0	0	0	0	0	1	4397	825	29	4		4	DDX46	5	134147433	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	318	134147433	46767827	347	116269											
KLHL3	26249	broad.mit.edu	37	chr5	136969567	136969567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcaatggtcactatttgCgtgatgggtacactagaagc	12	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136969567	A	A	136969567	1	1	129	0	1	0	0	0	0	0	0	0	8454	783	27	3		3	KLHL3	5	136969567	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2822134	136969567	43945693	348	116270											
CTNNA1	1495	broad.mit.edu	37	chr5	138147834	138147834	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctttacagacctacattCagaatttttgggttttgggg	9	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138147834	T	T	138147834	1	4	129	0	1	0	0	0	0	0	0	0	4046	841	29	4		4	CTNNA1	5	138147834	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1178267	138147834	42767426	349	116271											
PCDHA1	56147	broad.mit.edu	37	chr5	140167047	140167048	+	Missense_Mutation	DNP	CC	AA	AA													ggtgacttgctccttaatgcCccacgtccccttcaagctgg							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140167048	AA	AA	140167047	3	1	129	1	0	0	0	0	1	0	0	0	11613	623	22	2	1174	2	PCDHA1	5	140167047	Missense_Mutation	DNP	CC	TCGA-44-6777-01A-11D-1855-08	2019213	140167047	40748213	350	116272											
PCDHAC1	56135	broad.mit.edu	37	chr5	140306690	140306690	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcggggtggatctaccCagcggcaatttggtggtcag	14	9	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140306690	A	A	140306690	2	1	129	1	0	0	0	0	0	0	0	1	11626	581	21	2		2	PCDHAC1	5	140306690	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	139643	140306690	40608570	351	116273											
PCDHB7	56129	broad.mit.edu	37	chr5	140554442	140554442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacctgcggctcccggagGcggccccggaccaggccaac	13	19	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140554442	T	T	140554442	3	4	129	1	0	0	0	0	1	0	0	0	11641	1203	42	3	2028	3	PCDHB7	5	140554442	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	247752	140554442	40360818	352	116274											
PCDHGA11	56105	broad.mit.edu	37	chr5	140801457	140801457	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttagatggaggcgatccCatccgaaagggcgcagttcc	13	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140801457	T	T	140801457	2	4	129	1	0	0	0	0	0	0	0	1	11646	581	21	4		4	PCDHGA11	5	140801457	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	247015	140801457	40113803	353	116275											
PCDHGC4	56098	broad.mit.edu	37	chr5	140866246	140866246	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcccaggaatcgagatgtAtcagcttcctctttcatctc	8	12	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140866246	G	G	140866246	2	3	129	1	0	0	0	0	0	0	0	1	11664	436	16	5		5	PCDHGC4	5	140866246	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	64789	140866246	40049014	354	116276											
DPYSL3	1809	broad.mit.edu	37	chr5	146798049	146798049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaaggccgcctttgtccCttggaagaagtcatctactg	10	11	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146798049	A	A	146798049	3	1	129	1	0	0	0	0	1	0	0	0	4788	681	24	2	1486	2	DPYSL3	5	146798049	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	5931803	146798049	34117211	355	116277											
HTR4	3360	broad.mit.edu	37	chr5	147900526	147900526	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccttggtttagactcctttCcttgaaaaagaacaaggcag	9	9	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147900526	T	T	147900526	1	4	129	0	1	0	0	0	0	0	0	0	7519	870	30	4		4	HTR4	5	147900526	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1102477	147900526	33014734	356	116278											
PDE6A	5145	broad.mit.edu	37	chr5	149301324	149301324	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaaagagatcaaggaaaGgagattaagatgtcccacct	10	6	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149301324	A	A	149301324	1	1	129	0	1	0	0	0	0	0	0	0	11739	1015	35	4		4	PDE6A	5	149301324	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1400798	149301324	31613936	357	116279											
NDST1	3340	broad.mit.edu	37	chr5	149932858	149932858	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgggccagacacttccCacttggctacgagaggacct	11	12	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149932858	A	A	149932858	2	1	129	1	0	0	0	0	0	0	0	1	10350	581	21	2		2	NDST1	5	149932858	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	631534	149932858	30982402	358	116280											
GALNT10	55568	broad.mit.edu	37	chr5	153783750	153783750	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgccctacaaggtcccGgccggagtcagcctggcccg	13	15	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153783750	T	T	153783750	2	4	129	1	0	0	0	0	0	0	0	1	6270	1103	39	1		1	GALNT10	5	153783750	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	3850892	153783750	27131510	359	116281											
LARP1	23367	broad.mit.edu	37	chr5	154179119	154179119	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctgtccaagattttcttCttaatcccctcttccttctc	2	14	5	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154179119	G	G	154179119	1	3	129	0	1	0	0	0	0	0	0	0	8700	928	32	4		4	LARP1	5	154179119	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	395369	154179119	26736141	360	116282											
GABRB2	2561	broad.mit.edu	37	chr5	160763718	160763718	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttcaattttcgttactccTgttactgcattatcatcgcc	5	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160763718	A	A	160763718	2	1	129	1	0	0	0	0	0	0	0	1	6227	1567	55	5		5	GABRB2	5	160763718	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	6584599	160763718	20151542	361	116283											
GABRG2	2566	broad.mit.edu	37	chr5	161524754	161524754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacatggtggggaaaatctgGattccagacactttcttcag	10	8	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161524754	T	T	161524754	3	4	129	1	0	0	0	0	1	0	0	0	6232	1183	41	3	452	3	GABRG2	5	161524754	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	761036	161524754	19390506	362	116284											
ODZ2	57451	broad.mit.edu	37	chr5	167645439	167645439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagatctgccttttagctGgggcagcctcggactgcgac	15	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167645439	T	T	167645439	3	4	129	1	0	0	0	0	1	0	0	0	10930	1348	47	2	4606	2	ODZ2	5	167645439	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	6120685	167645439	13269821	363	116285											
DOCK2	1794	broad.mit.edu	37	chr5	169423144	169423144	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatgaaccagaagttcctAgaacacacgaactttgagtt	7	10	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169423144	G	G	169423144	2	3	129	1	0	0	0	0	0	0	0	1	4727	407	15	5		5	DOCK2	5	169423144	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	1777705	169423144	11492116	364	116286											
RANBP17	64901	broad.mit.edu	37	chr5	170305126	170305126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgaattggaagtgttatGtactcatctctacataggga	11	6	2	1	rs147041695		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170305126	T	T	170305126	3	4	129	1	0	0	0	0	1	0	0	0	13135	1377	48	3	50	3	RANBP17	5	170305126	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	881982	170305126	10610134	365	116287											
CLK4	57396	broad.mit.edu	37	chr5	178045738	178045738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcaacgtatctccggtccCgataatctcgctcattcaag	7	14	5	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178045738	A	A	178045738	3	1	129	1	0	0	0	0	1	0	0	0	3571	652	23	1	1286	1	CLK4	5	178045738	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	7740612	178045738	2869522	366	116288											
ADAMTS2	9509	broad.mit.edu	37	chr5	178581891	178581891	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagggtgcagctgcggaccgGatggcacatgccggtgacag	17	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178581891	A	A	178581891	3	1	129	1	0	0	0	0	1	0	0	0	265	1174	41	4	2612	4	ADAMTS2	5	178581891	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	536153	178581891	2333369	367	116289											
MAML1	9794	broad.mit.edu	37	chr5	179192504	179192504	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcccccctcggtcagtctGacaagccttctggagccgac	9	18	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179192504	T	T	179192504	3	4	129	1	0	0	0	0	1	0	0	0	9297	1290	45	3	499	3	MAML1	5	179192504	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	610613	179192504	1722756	368	116290											
DUSP22	56940	broad.mit.edu	37	chr6	348324	348324	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcaggtgcccctgaacGgtgcccacagtctttccgta	12	14	1	1	rs143435851	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	348324	C	C	348324	1	2	129	0	1	0	0	0	0	0	0	0	4861	1131	39	4		4	DUSP22	6	348324	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08		348324	170766743	369	116291											
MYLK4	340156	broad.mit.edu	37	chr6	2685515	2685515	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggtcagggagggggcGgaggggatacgtactactcc	21	7	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2685515	A	A	2685515	1	1	129	0	1	0	0	0	0	0	0	0	10153	1131	39	4		4	MYLK4	6	2685515	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2337191	2685515	168429552	370	116292											
SERPINB9	5272	broad.mit.edu	37	chr6	2890614	2890614	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagacacaggtctctctccGctgacattgccgacaagtca	8	14	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2890614	A	A	2890614	3	1	129	1	0	0	0	0	1	0	0	0	14221	1087	38	4	220	4	SERPINB9	6	2890614	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	205099	2890614	168224453	371	116293											
C6orf146	222826	broad.mit.edu	37	chr6	4074639	4074639	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttattttaaaatcgtatGttttatgaataccttaaaac	3	5	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4074639	A	A	4074639	1	1	129	0	1	0	0	0	0	0	0	0	2358	1392	48	4		4	C6orf146	6	4074639	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1184025	4074639	167040428	372	116294											
RREB1	6239	broad.mit.edu	37	chr6	7182319	7182319	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcagaaggaaccaggtaAgtgttcacacctagtggtga	13	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7182319	C	C	7182319	1	2	129	0	1	0	0	0	0	0	0	0	13790	87	3	5		5	RREB1	6	7182319	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	3107680	7182319	163932748	373	116295											
MAK	4117	broad.mit.edu	37	chr6	10796256	10796256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtttttgacgatgctcGggaatagcgtttgtggcggt	15	6	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10796256	T	T	10796256	3	4	129	1	0	0	0	0	1	0	0	0	9289	1116	39	1	777	1	MAK	6	10796256	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3613937	10796256	160318811	374	116296											
RBM24	221662	broad.mit.edu	37	chr6	17282877	17282877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcccgcctgttaaaaatGggagatcaaggaggagggtc	14	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17282877	T	T	17282877	1	4	129	0	1	0	0	0	0	0	0	0	13232	1363	47	2		2	RBM24	6	17282877	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	6486621	17282877	153832190	375	116297											
FAM8A1	51439	broad.mit.edu	37	chr6	17606055	17606055	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaaaagtttatctttaAaattggtatagttgagccag	11	3	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17606055	T	T	17606055	1	4	129	0	1	0	0	0	0	0	0	0	5702	29	1	5		5	FAM8A1	6	17606055	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	323178	17606055	153509012	376	116298											
E2F3	1871	broad.mit.edu	37	chr6	20490382	20490382	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacttattttttgtttccatCaatgttttcttttcagactt	3	7	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20490382	G	G	20490382	1	3	129	0	1	0	0	0	0	0	0	0	4908	841	29	4		4	E2F3	6	20490382	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2884327	20490382	150624685	377	116299											
LRRC16A	55604	broad.mit.edu	37	chr6	25600607	25600607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagatgaaaagaaaaagcGagattctcggaaaagtagtg	13	3	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25600607	T	T	25600607	3	4	129	1	0	0	0	0	1	0	0	0	9058	1058	37	3	3315	3	LRRC16A	6	25600607	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5110225	25600607	145514460	378	116300											
SLC17A3	10786	broad.mit.edu	37	chr6	25862059	25862059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactattcgagttacaatgaGcaagactattccaaagtcag	8	8	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25862059	T	T	25862059	1	4	129	0	1	0	0	0	0	0	0	0	14531	971	34	3		3	SLC17A3	6	25862059	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	261452	25862059	145253008	379	116301											
HIST1H3E	8353	broad.mit.edu	37	chr6	26225732	26225732	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgctattcatgccaaacGcgtgaccatcatgcctaaag	9	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26225732	A	A	26225732	3	1	129	1	0	0	0	0	1	0	0	0	7226	1087	38	4	352	4	HIST1H3E	6	26225732	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	363673	26225732	144889335	380	116302											
HIST1H4I	8294	broad.mit.edu	37	chr6	27107277	27107277	+	Missense_Mutation	SNP	G	A	A													gagtgttgaaggtgttcctgGagaacgtgatccgggacgcc							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27107277	A	A	27107277	3	1	129	1	0	0	0	0	1	0	0	0	7240	1175	41	4	192	4	HIST1H4I	6	27107277	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	881545	27107277	144007790	381	116303	508	2									
HIST1H4I	8294	broad.mit.edu	37	chr6	27107279	27107279	+	Silent	SNP	G	A	A													gtgttgaaggtgttcctggaGaacgtgatccgggacgccgt					rs150377743	byFrequency	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27107279	A	A	27107279	2	1	129	1	0	0	0	0	0	0	0	1	7240	933	33	4		4	HIST1H4I	6	27107279	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	2	27107279	144007788	382	116304	508	2									
GPX6	257202	broad.mit.edu	37	chr6	28483474	28483474	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtctgctgagcaaagccaAccaggaaaaacaggacaaga	12	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28483474	G	G	28483474	3	3	129	1	0	0	0	0	1	0	0	0	6810	43	2	5	638	5	GPX6	6	28483474	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1376195	28483474	142631593	383	116305											
TRIM27	5987	broad.mit.edu	37	chr6	28876885	28876885	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaaatttaaaaaacatgaGtaaattttttttttttttga	3	3	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28876885	A	A	28876885	1	1	129	0	1	0	0	0	0	0	0	0	16625	1044	36	4		4	TRIM27	6	28876885	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	393411	28876885	142238182	384	116306											
OR12D2	26529	broad.mit.edu	37	chr6	29365221	29365221	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccacttcatggtagttattCttttctatgcacctgttctt	5	11	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29365221	G	G	29365221	3	3	129	1	0	0	0	0	1	0	0	0	11025	913	32	4	747	4	OR12D2	6	29365221	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	488336	29365221	141749846	385	116307											
GABBR1	2550	broad.mit.edu	37	chr6	29541912	29541912	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accataagttgtgtccccggGatgctggtcaacctctggga	12	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29541912	T	T	29541912	1	4	129	0	1	0	0	0	0	0	0	0	6215	1189	41	3		3	GABBR1	6	29541912	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	176691	29541912	141573155	386	116308											
TRIM15	89870	broad.mit.edu	37	chr6	30131581	30131582	+	Frame_Shift_Del	DEL	CC	-	-													accttctgccggctctgcctCcccgcgctctcccagatggg							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30131582	-	-	30131581	7	5	129	1	0	1	0	1	0	0	0	0	16614	842	30	0	122	0	TRIM15	6	30131581	Frame_Shift_Del	DEL	CC	TCGA-44-6777-01A-11D-1855-08	589669	30131581	140983486	387	116309											
IER3	8870	broad.mit.edu	37	chr6	30712023	30712023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcgaggcctctggagtcGggtcgttccccagtgactcc	14	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30712023	A	A	30712023	1	1	129	0	1	0	0	0	0	0	0	0	7576	1131	39	4		4	IER3	6	30712023	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	580442	30712023	140403044	388	116310											
DDR1	780	broad.mit.edu	37	chr6	30862315	30862315	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttggaagaggagctgacGgttcacctctctgtccctgg	14	10	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30862315	A	A	30862315	2	1	129	1	0	0	0	0	0	0	0	1	4369	1103	39	4		4	DDR1	6	30862315	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	150292	30862315	140252752	389	116311											
VARS2	57176	broad.mit.edu	37	chr6	30889123	30889123	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagggccgagtgtggcacaGagcacctagcccaggagtca	16	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30889123	T	T	30889123	1	4	129	0	1	0	0	0	0	0	0	0	17251	957	33	3		3	VARS2	6	30889123	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	26808	30889123	140225944	390	116312											
POU5F1	5460	broad.mit.edu	37	chr6	31133041	31133041	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttctctttcgggcctgcAcgagggtttctgctttgcat	11	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31133041	G	G	31133041	3	3	129	1	0	0	0	0	1	0	0	0	12377	159	6	5	410	5	POU5F1	6	31133041	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	243918	31133041	139982026	391	116313											
POU5F1	5460	broad.mit.edu	37	chr6	31133066	31133066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttctgctttgcatatctGtgcaggtgggaagggggtga	17	5	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31133066	A	A	31133066	1	1	129	0	1	0	0	0	0	0	0	0	12377	1392	48	4		4	POU5F1	6	31133066	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	25	31133066	139982001	392	116314											
EHMT2	10919	broad.mit.edu	37	chr6	31857313	31857313	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcctcctcctcttcctcttCttcttcttcctcctcttcct	0	20	6	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31857313	G	G	31857313	3	3	129	1	0	0	0	0	1	0	0	0	5024	922	32	4	2785	4	EHMT2	6	31857313	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	724247	31857313	139257754	393	116315											
C6orf10	10665	broad.mit.edu	37	chr6	32261492	32261493	+	Missense_Mutation	DNP	CC	TT	TT													acttttctttatttgggctcCctgtccttgtggtatactca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32261493	TT	TT	32261492	3	4	129	1	0	0	0	0	1	0	0	0	2340	632	22	4	737	4	C6orf10	6	32261492	Missense_Mutation	DNP	CC	TCGA-44-6777-01A-11D-1855-08	404179	32261492	138853575	394	116316											
BRD2	6046	broad.mit.edu	37	chr6	32940530	32940531	+	5'UTR	DNP	GG	TT	TT													aaagagactgctttcgtgccGgccaggcagggggtttgtcg							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32940531	TT	TT	32940530	1	4	129	0	1	0	0	0	0	0	0	0	1511	1131	39	1		1	BRD2	6	32940530	5'UTR	DNP	GG	TCGA-44-6777-01A-11D-1855-08	679038	32940530	138174537	395	116317											
HSD17B8	7923	broad.mit.edu	37	chr6	33172420	33172420	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggattggcttagtgctgGgattcccacccacccacagc	11	14	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33172420	C	C	33172420	1	2	129	0	1	0	0	0	0	0	0	0	7456	1246	43	4		4	HSD17B8	6	33172420	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	231890	33172420	137942647	396	116318											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34827440	34827440	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttactatgtgcatttctagAttgggaagtaccatatagtc	8	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34827440	G	G	34827440	1	3	129	0	1	0	0	0	0	0	0	0	17094	348	12	5		5	UHRF1BP1	6	34827440	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	1655020	34827440	136287627	397	116319											
FANCE	2178	broad.mit.edu	37	chr6	35424046	35424046	+	Frame_Shift_Del	DEL	G	-	-													attaaggaccagcctgtcatGgcagttaagactggcgagga							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35424046	-	-	35424046	7	5	129	1	0	1	0	1	0	0	0	0	5723	1348	47	0	777	0	FANCE	6	35424046	Frame_Shift_Del	DEL	G	TCGA-44-6777-01A-11D-1855-08	596606	35424046	135691021	398	116320											
C6orf127	340204	broad.mit.edu	37	chr6	35754984	35754984	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcctggggaggaaagaagGgtaggtgggcggaaatgccc	18	6	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35754984	C	C	35754984	1	2	129	0	1	0	0	0	0	0	0	0	2350	1247	43	4		4	C6orf127	6	35754984	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	330938	35754984	135360083	399	116321											
SRPK1	6732	broad.mit.edu	37	chr6	35837307	35837307	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcttgttcatcttcacAgggtatctctgcccgaatgc	8	12	5	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35837307	C	C	35837307	3	2	129	1	0	0	0	0	1	0	0	0	15277	188	7	5	628	5	SRPK1	6	35837307	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	82323	35837307	135277760	400	116322											
MAPK14	1432	broad.mit.edu	37	chr6	36075268	36075268	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagatgcttgtattggactCagataagagaattacagcgg	12	5	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36075268	G	G	36075268	4	3	129	1	0	0	0	0	0	1	0	0	9368	839	29	4	1057	4	MAPK14	6	36075268	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	237961	36075268	135039799	401	116323											
DNAH8	1769	broad.mit.edu	37	chr6	38723882	38723882	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtgggaggaaattacaTgtcatcctgtgaaaaagtta	10	5	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38723882	A	A	38723882	1	1	129	0	1	0	0	0	0	0	0	0	4647	1479	51	5		5	DNAH8	6	38723882	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	2648614	38723882	132391185	402	116324											
DNAH8	1769	broad.mit.edu	37	chr6	38828217	38828217	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagtatataatttttttgtAttttatgtttttaaggtaaa	5	1	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38828217	G	G	38828217	1	3	129	0	1	0	0	0	0	0	0	0	4647	464	16	5		5	DNAH8	6	38828217	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	104335	38828217	132286850	403	116325											
TREML2	79865	broad.mit.edu	37	chr6	41168762	41168762	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatggttccatccagctgGgcagtgtcaggcctggagat	14	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41168762	A	A	41168762	1	1	129	0	1	0	0	0	0	0	0	0	16597	1247	43	4		4	TREML2	6	41168762	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	2340545	41168762	129946305	404	116326											
TREM1	54210	broad.mit.edu	37	chr6	41250404	41250404	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctgctggcaaacttctcTagcgtgtagtcacatttcac	9	11	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41250404	C	C	41250404	2	2	129	1	0	0	0	0	0	0	0	1	16594	1509	53	5		5	TREM1	6	41250404	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	81642	41250404	129864663	405	116327											
KIAA0240	23506	broad.mit.edu	37	chr6	42830320	42830320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaagagcttccctgtccCgagacaagcgtttggcactt	11	11	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42830320	A	A	42830320	2	1	129	1	0	0	0	0	0	0	0	1	8234	644	23	1		1	KIAA0240	6	42830320	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1579916	42830320	128284747	406	116328											
PPP2R5D	5528	broad.mit.edu	37	chr6	42957397	42957397	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagcctagcagctcgggcAaggatggtggaggcgagaac	16	10	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42957397	T	T	42957397	4	4	129	1	0	0	0	0	0	1	0	0	12496	131	5	5	82	5	PPP2R5D	6	42957397	Nonsense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	127077	42957397	128157670	407	116329											
MAD2L1BP	9587	broad.mit.edu	37	chr6	43604174	43604174	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcccagatagaactacttGagacaagctctacgcaggaa	8	12	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43604174	C	C	43604174	3	2	129	1	0	0	0	0	1	0	0	0	9237	1291	45	4	259	4	MAD2L1BP	6	43604174	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	646777	43604174	127510893	408	116330											
RUNX2	860	broad.mit.edu	37	chr6	45515072	45515072	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagtggcccagtggtatctGggggccacatcccacacgta	13	13	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45515072	C	C	45515072	1	2	129	0	1	0	0	0	0	0	0	0	13859	1363	47	4		4	RUNX2	6	45515072	3'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	1910898	45515072	125599995	409	116331											
CRISP2	7180	broad.mit.edu	37	chr6	49668344	49668344	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtcggctccttccacagcTgattcacacccatctcctta	5	18	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49668344	G	G	49668344	1	3	129	0	1	0	0	0	0	0	0	0	3912	1595	55	5		5	CRISP2	6	49668344	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	4153272	49668344	121446723	410	116332											
PKHD1	5314	broad.mit.edu	37	chr6	51890383	51890383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaagaagcaaccccctcaCagtaagtatggtcccaccac	7	14	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51890383	A	A	51890383	3	1	129	1	0	0	0	0	1	0	0	0	12066	478	17	3	8182	3	PKHD1	6	51890383	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2222039	51890383	119224684	411	116333											
PKHD1	5314	broad.mit.edu	37	chr6	51900510	51900510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagcctcggatggtggccCagagccctcctgtaacaaaa	11	12	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51900510	A	A	51900510	3	1	129	1	0	0	0	0	1	0	0	0	12066	595	21	2	9316	2	PKHD1	6	51900510	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	10127	51900510	119214557	412	116334											
MCM3	4172	broad.mit.edu	37	chr6	52149468	52149468	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtccagcaccacggtacccGccatgcccgctgccaaagaa	9	18	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52149468	A	A	52149468	3	1	129	1	0	0	0	0	1	0	0	0	9480	1087	38	4	2489	4	MCM3	6	52149468	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	248958	52149468	118965599	413	116335											
KHDRBS2	202559	broad.mit.edu	37	chr6	62757886	62757886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttggtccaagcaatttcCccacaaaattgaactaggaa	6	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62757886	A	A	62757886	3	1	129	1	0	0	0	0	1	0	0	0	8217	623	22	2	844	2	KHDRBS2	6	62757886	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	10608418	62757886	108357181	414	116336											
BAI3	577	broad.mit.edu	37	chr6	70049174	70049174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgggggtttggctatgGcctggggtgtgatgtatagc	18	4	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70049174	T	T	70049174	1	4	129	0	1	0	0	0	0	0	0	0	1305	1218	42	3		3	BAI3	6	70049174	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7291288	70049174	101065893	415	116337											
CD109	135228	broad.mit.edu	37	chr6	74502554	74502554	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttagagacctacatttgttCgtagaaaaaaatttgttttt	6	4	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74502554	A	A	74502554	1	1	129	0	1	0	0	0	0	0	0	0	2993	899	31	3		3	CD109	6	74502554	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	4453380	74502554	96612513	416	116338											
MDN1	23195	broad.mit.edu	37	chr6	90494670	90494670	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtggtttattatactatttCctatttcacgcgggagccac	9	9	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90494670	G	G	90494670	1	3	129	0	1	0	0	0	0	0	0	0	9508	870	30	4		4	MDN1	6	90494670	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	15992116	90494670	80620397	417	116339											
HACE1	57531	broad.mit.edu	37	chr6	105259273	105259273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcactgcactgtctgaGggggaaaaaataattaaaag	11	6	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105259273	T	T	105259273	1	4	129	0	1	0	0	0	0	0	0	0	7006	1015	35	2		2	HACE1	6	105259273	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	14764603	105259273	65855794	418	116340											
EPB41L2	2037	broad.mit.edu	37	chr6	131277563	131277563	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtttttccttggttgcAtctgttcctaactggctaga	9	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131277563	G	G	131277563	2	3	129	1	0	0	0	0	0	0	0	1	5195	214	8	5		5	EPB41L2	6	131277563	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	26018290	131277563	39837504	419	116341											
ENPP3	5169	broad.mit.edu	37	chr6	131996333	131996333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatgccttacaacgggtaGtgaagcactttcagatattc	8	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131996333	T	T	131996333	1	4	129	0	1	0	0	0	0	0	0	0	5173	1044	36	3		3	ENPP3	6	131996333	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	718770	131996333	39118734	420	116342											
VNN1	8876	broad.mit.edu	37	chr6	133015075	133015075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacatatttttctccttgcCcactttatttcattaggcat	3	10	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133015075	A	A	133015075	1	1	129	0	1	0	0	0	0	0	0	0	17309	638	22	2		2	VNN1	6	133015075	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1018742	133015075	38099992	421	116343											
AHI1	54806	broad.mit.edu	37	chr6	135787305	135787305	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtagtcaactggggcacCgtctttatcacctttttatt	8	9	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135787305	A	A	135787305	2	1	129	1	0	0	0	0	0	0	0	1	413	639	23	1		1	AHI1	6	135787305	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	2772230	135787305	35327762	422	116344											
BCLAF1	9774	broad.mit.edu	37	chr6	136582513	136582513	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgagtccatttaggactgcTacctgattttttgaagttaa	8	6	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136582513	A	A	136582513	3	1	129	1	0	0	0	0	1	0	0	0	1388	1522	53	5	123	5	BCLAF1	6	136582513	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	795208	136582513	34532554	423	116345											
BCLAF1	9774	broad.mit.edu	37	chr6	136589341	136589341	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactcctgcaaagcctgagtAttctttcatttcatggtgag	8	9	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136589341	G	G	136589341	3	3	129	1	0	0	0	0	1	0	0	0	1388	449	16	5	422	5	BCLAF1	6	136589341	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	6828	136589341	34525726	424	116346											
C6orf118	168090	broad.mit.edu	37	chr6	165706746	165706746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaggccctgtgatcttGggtgatgtgggtgaatatgt	16	6	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165706746	T	T	165706746	1	4	129	0	1	0	0	0	0	0	0	0	2346	1363	47	2		2	C6orf118	6	165706746	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	29117405	165706746	5408321	425	116347											
C7orf50	84310	broad.mit.edu	37	chr7	1037473	1037473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcgagttggtcaggggCggggcagggaggggccgctg	23	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1037473	A	A	1037473	1	1	129	0	1	0	0	0	0	0	0	0	2424	783	27	3		3	C7orf50	7	1037473	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08		1037473	158101190	426	116348											
EIF3B	8662	broad.mit.edu	37	chr7	2411397	2411398	+	Intron	INS	-	T	T													agaatgtcaccccttcccccINSttttttttaaacagggtgtt							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2411398	T	T	2411397	6	5	129	0	1	1	1	0	0	0	0	0	5053	696	24	0		0	EIF3B	7	2411397	Intron	INS	-	TCGA-44-6777-01A-11D-1855-08	1373924	2411397	156727266	427	116349											
AMZ1	155185	broad.mit.edu	37	chr7	2740399	2740399	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagccgataggtacgggacGcctgcagccatcggcacgct	13	14	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2740399	A	A	2740399	1	1	129	0	1	0	0	0	0	0	0	0	596	1102	38	4		4	AMZ1	7	2740399	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	329002	2740399	156398264	428	116350											
MIOS	54468	broad.mit.edu	37	chr7	7636007	7636007	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaccaacgaaatctaaagtCacaagttgtcctggctgtcg	8	11	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7636007	T	T	7636007	2	4	129	1	0	0	0	0	0	0	0	1	9682	813	29	4		4	MIOS	7	7636007	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	4895608	7636007	151502656	429	116351											
ETV1	2115	broad.mit.edu	37	chr7	14027869	14027869	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacgcacacgcgcgcgcAcacacacacacacagacatg	7	18	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14027869	G	G	14027869	1	3	129	0	1	0	0	0	0	0	0	0	5319	174	6	5		5	ETV1	7	14027869	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	6391862	14027869	145110794	430	116352											
DGKB	1607	broad.mit.edu	37	chr7	14217662	14217662	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaagggaactacctgatgAccacgcaggagcactgagcc	12	11	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14217662	C	C	14217662	3	2	129	1	0	0	0	0	1	0	0	0	4506	275	10	5	201	5	DGKB	7	14217662	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	189793	14217662	144921001	431	116353											
DNAH11	8701	broad.mit.edu	37	chr7	21621705	21621705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataggctgttaaatgaaagGggtgaattctcattcaggta	11	4	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21621705	T	T	21621705	1	4	129	0	1	0	0	0	0	0	0	0	4639	1247	43	2		2	DNAH11	7	21621705	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7404043	21621705	137516958	432	116354											
JAZF1	221895	broad.mit.edu	37	chr7	28031588	28031588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttgtttttctaaaaccCgtggatctgtatctgtaata	6	7	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28031588	A	A	28031588	3	1	129	1	0	0	0	0	1	0	0	0	8016	652	23	1	619	1	JAZF1	7	28031588	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6409883	28031588	131107075	433	116355											
PDE1C	5137	broad.mit.edu	37	chr7	31918501	31918501	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtttctacccacaattttCagtatttataaagataggaa	5	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31918501	T	T	31918501	1	4	129	0	1	0	0	0	0	0	0	0	11729	841	29	4		4	PDE1C	7	31918501	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3886913	31918501	127220162	434	116356											
VPS41	27072	broad.mit.edu	37	chr7	38805348	38805348	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaataagtagacattttccCcagaggtttagagaaatctc	8	7	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38805348	T	T	38805348	1	4	129	0	1	0	0	0	0	0	0	0	17337	638	22	4		4	VPS41	7	38805348	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	6886847	38805348	120333315	435	116357											
AEBP1	165	broad.mit.edu	37	chr7	44149642	44149642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccattgggatggagtcacaCcgtattgaggacaaccagat	11	10	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44149642	A	A	44149642	3	1	129	1	0	0	0	0	1	0	0	0	349	506	18	3	1217	3	AEBP1	7	44149642	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	5344294	44149642	114989021	436	116358											
PKD1L1	168507	broad.mit.edu	37	chr7	47970755	47970755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggggcactcgctgggagCtggtctgagtgggtctggcc	18	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47970755	A	A	47970755	3	1	129	1	0	0	0	0	1	0	0	0	12059	797	28	3	8074	3	PKD1L1	7	47970755	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3821113	47970755	111167908	437	116359											
ZPBP	11055	broad.mit.edu	37	chr7	50070835	50070835	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcttctcaaaagaaatatTataaatgctattgcagggag	7	5	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50070835	A	A	50070835	3	1	129	1	0	0	0	0	1	0	0	0	18348	1754	61	5	512	5	ZPBP	7	50070835	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	2100080	50070835	109067828	438	116360											
EGFR	1956	broad.mit.edu	37	chr7	55266314	55266314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgtaggtttctaaacAtcaagaaacagtaaccagta	7	6	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55266314	T	T	55266314	1	4	129	0	1	0	0	0	0	0	0	0	5007	232	8	5		5	EGFR	7	55266314	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	5195479	55266314	103872349	439	116361											
LANCL2	55915	broad.mit.edu	37	chr7	55496113	55496113	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagcacacgggtgccgcattCctgacagaccctattcgctc	10	15	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55496113	G	G	55496113	3	3	129	1	0	0	0	0	1	0	0	0	8693	855	30	4	1261	4	LANCL2	7	55496113	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	229799	55496113	103642550	440	116362											
CCT6A	908	broad.mit.edu	37	chr7	56125662	56125662	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatctgaaaatcaataaccAtaattttgtgtgtgtttaaa	5	6	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56125662	G	G	56125662	1	3	129	0	1	0	0	0	0	0	0	0	2987	232	8	5		5	CCT6A	7	56125662	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	629549	56125662	103013001	441	116363											
HIP1	3092	broad.mit.edu	37	chr7	75216183	75216183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggggaaacagagtcaaCaacaagaacataacagtcaa	10	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75216183	A	A	75216183	1	1	129	0	1	0	0	0	0	0	0	0	7181	493	17	3		3	HIP1	7	75216183	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	19090521	75216183	83922480	442	116364											
PION	54103	broad.mit.edu	37	chr7	76984630	76984630	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttctgcagaagctgtaatAaagacgactggctgagcagt	12	7	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76984630	G	G	76984630	3	3	129	1	0	0	0	0	1	0	0	0	12029	372	13	5	1390	5	PION	7	76984630	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1768447	76984630	82154033	443	116365											
ABCB1	5243	broad.mit.edu	37	chr7	87150195	87150195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgcttcagtagcgatctGtaacagacagcaccgatcac	8	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87150195	T	T	87150195	1	4	129	0	1	0	0	0	0	0	0	0	40	1392	48	3		3	ABCB1	7	87150195	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	10165565	87150195	71988468	444	116366											
STEAP1	26872	broad.mit.edu	37	chr7	89790346	89790352	+	Frame_Shift_Del	DEL	ATATTTT	-	-													ttagcaacttcccatcaacaAtatttttataaaattccaat							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89790352	-	-	89790346	7	5	129	1	0	1	0	1	0	0	0	0	15395	98	4	0	318	0	STEAP1	7	89790346	Frame_Shift_Del	DEL	ATATTTT	TCGA-44-6777-01A-11D-1855-08	2640151	89790346	69348317	445	116367											
SAMD9L	219285	broad.mit.edu	37	chr7	92764239	92764239	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattggccaggatatccctaGagctagccccttctcttaca	7	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92764239	A	A	92764239	3	1	129	1	0	0	0	0	1	0	0	0	13938	942	33	4	3712	4	SAMD9L	7	92764239	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2973893	92764239	66374424	446	116368											
HEPACAM2	253012	broad.mit.edu	37	chr7	92825041	92825041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcagtaatgggtaatgcaGccatttgaccacactgccca	9	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92825041	A	A	92825041	1	1	129	0	1	0	0	0	0	0	0	0	7120	986	34	4		4	HEPACAM2	7	92825041	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	60802	92825041	66313622	447	116369											
CALCR	799	broad.mit.edu	37	chr7	93055917	93055917	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacctggaagagaaaaagGagccttgtttttatatgata	11	4	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93055917	T	T	93055917	1	4	129	0	1	0	0	0	0	0	0	0	2605	1189	41	3		3	CALCR	7	93055917	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	230876	93055917	66082746	448	116370											
TAC1	6863	broad.mit.edu	37	chr7	97362151	97362151	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtggcacgcaccgccaccAcggaaagaggcagcggttgc	14	14	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97362151	T	T	97362151	1	4	129	0	1	0	0	0	0	0	0	0	15617	174	6	5		5	TAC1	7	97362151	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	4306234	97362151	61776512	449	116371											
TRRAP	8295	broad.mit.edu	37	chr7	98509602	98509602	+	Intron	DEL	G	-	-													ctttgtcttaaaactgctttGgggaagggattaatttttca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98509602	-	-	98509602	6	5	129	0	1	1	0	1	0	0	0	0	16726	1363	47	0		0	TRRAP	7	98509602	Intron	DEL	G	TCGA-44-6777-01A-11D-1855-08	1147451	98509602	60629061	450	116372											
CPSF4	10898	broad.mit.edu	37	chr7	99051674	99051674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaatcagcagagaacccCgcaggtcatcggggtcatgc	11	14	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99051674	A	A	99051674	3	1	129	1	0	0	0	0	1	0	0	0	3860	652	23	1	682	1	CPSF4	7	99051674	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	542072	99051674	60086989	451	116373											
ZAN	7455	broad.mit.edu	37	chr7	100383910	100383910	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggatcaggaggcctggcctCcagtttagctcttgctaact	11	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100383910	G	G	100383910	1	3	129	0	1	0	0	0	0	0	0	0	17640	870	30	4		4	ZAN	7	100383910	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1332236	100383910	58754753	452	116374											
SLC12A9	56996	broad.mit.edu	37	chr7	100457737	100457737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgtccccgctgagccctGgctgatgtgtctgctgtgga	13	14	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100457737	T	T	100457737	1	4	129	0	1	0	0	0	0	0	0	0	14503	1363	47	2		2	SLC12A9	7	100457737	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	73827	100457737	58680926	453	116375											
CUX1	1523	broad.mit.edu	37	chr7	101877296	101877296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagatccctggctctcgGtgacaatacctgtcttgctt	8	13	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101877296	T	T	101877296	1	4	129	0	1	0	0	0	0	0	0	0	4097	1276	44	3		3	CUX1	7	101877296	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1419559	101877296	57261367	454	116376											
RELN	5649	broad.mit.edu	37	chr7	103270652	103270652	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaaaaagtcaaaatttaGattattttggtatcttaaaa	4	2	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103270652	T	T	103270652	1	4	129	0	1	0	0	0	0	0	0	0	13328	957	33	3		3	RELN	7	103270652	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1393356	103270652	55868011	455	116377											
RINT1	60561	broad.mit.edu	37	chr7	105190829	105190829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtactcttgtttgaaaGggagctacacagtgttcatg	11	6	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105190829	T	T	105190829	3	4	129	1	0	0	0	0	1	0	0	0	13487	1000	35	2	1263	2	RINT1	7	105190829	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1920177	105190829	53947834	456	116378											
CDHR3	222256	broad.mit.edu	37	chr7	105662544	105662544	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtctacacttgaggtgtgGacatttgagaaaaagattga	11	5	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105662544	A	A	105662544	1	1	129	0	1	0	0	0	0	0	0	0	3150	1189	41	4		4	CDHR3	7	105662544	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	471715	105662544	53476119	457	116379											
CDHR3	222256	broad.mit.edu	37	chr7	105662817	105662817	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaggaagaaagcggaggctCttgttgagacaggaacagtg	15	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105662817	G	G	105662817	3	3	129	1	0	0	0	0	1	0	0	0	3150	913	32	4	2053	4	CDHR3	7	105662817	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	273	105662817	53475846	458	116380											
LAMB1	3912	broad.mit.edu	37	chr7	107569639	107569640	+	Frame_Shift_Ins	INS	-	TT	TT													tgcagtgactttaacatctgINSttgcacttttgctgagtaaa							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107569640	TT	TT	107569639	7	5	129	1	0	1	1	0	0	0	0	0	8682	1377	48	0	619	0	LAMB1	7	107569639	Frame_Shift_Ins	INS	-	TCGA-44-6777-01A-11D-1855-08	1906822	107569639	51569024	459	116381											
ANKRD7	56311	broad.mit.edu	37	chr7	117864800	117864800	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggagagggctgccggccGgatgccagggcagaggggca	20	10	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117864800	A	A	117864800	1	1	129	0	1	0	0	0	0	0	0	0	686	1131	39	4		4	ANKRD7	7	117864800	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	10295161	117864800	41273863	460	116382											
HYAL4	23553	broad.mit.edu	37	chr7	123508376	123508376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttgtgttgttcaaccaGtacatctcacttcatggctc	7	11	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123508376	T	T	123508376	3	4	129	1	0	0	0	0	1	0	0	0	7536	1029	36	3	51	3	HYAL4	7	123508376	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5643576	123508376	35630287	461	116383											
SND1	27044	broad.mit.edu	37	chr7	127498048	127498048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagggcccatgcagctcgGcatcccccgggttctcccac	11	17	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127498048	T	T	127498048	1	4	129	0	1	0	0	0	0	0	0	0	14958	1218	42	3		3	SND1	7	127498048	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3989672	127498048	31640615	462	116384											
FLNC	2318	broad.mit.edu	37	chr7	128480745	128480745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgagtaccttgcgccCcccatgctgtcctgtctagg	12	14	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128480745	A	A	128480745	1	1	129	0	1	0	0	0	0	0	0	0	5993	638	22	2		2	FLNC	7	128480745	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	982697	128480745	30657918	463	116385											
PLXNA4	91584	broad.mit.edu	37	chr7	131859697	131859697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctggcacgaagagaagcCtgtgagatggctggatgggg	19	6	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131859697	A	A	131859697	1	1	129	0	1	0	0	0	0	0	0	0	12217	696	24	2		2	PLXNA4	7	131859697	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3378952	131859697	27278966	464	116386											
AKR1B10	57016	broad.mit.edu	37	chr7	134222989	134222989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaatgtgattgtcatccCcaagtctgtgacaccagcac	10	11	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134222989	A	A	134222989	3	1	129	1	0	0	0	0	1	0	0	0	467	623	22	2	815	2	AKR1B10	7	134222989	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2363292	134222989	24915674	465	116387											
CHRM2	1129	broad.mit.edu	37	chr7	136623134	136623134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctccagcatcttgttctGctgctccaggaaccgtacct	9	14	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136623134	T	T	136623134	1	4	129	0	1	0	0	0	0	0	0	0	3408	1334	46	3		3	CHRM2	7	136623134	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2400145	136623134	22515529	466	116388											
KIAA1549	57670	broad.mit.edu	37	chr7	138556069	138556069	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtgctcgaagatggaggctGatgagtgctgctcatttccc	13	10	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138556069	C	C	138556069	4	2	129	1	0	0	0	0	0	1	0	0	8314	1294	45	4	1499	4	KIAA1549	7	138556069	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1932935	138556069	20582594	467	116389											
TBXAS1	6916	broad.mit.edu	37	chr7	139657365	139657365	+	Intron	SNP	C	A	A													ccgcgtttgcttcccgggaaCaggcgtctaatggccctggt							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139657365	A	A	139657365	1	1	129	0	1	0	0	0	0	0	0	0	15786	493	17	3		3	TBXAS1	7	139657365	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1101296	139657365	19481298	468	116390	509	2									
TBXAS1	6916	broad.mit.edu	37	chr7	139657368	139657368	+	Intron	SNP	G	C	C													cgtttgcttcccgggaacagGcgtctaatggccctggttta							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139657368	C	C	139657368	1	2	129	0	1	0	0	0	0	0	0	0	15786	1218	42	4		4	TBXAS1	7	139657368	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3	139657368	19481295	469	116391	509	2									
TAS2R3	50831	broad.mit.edu	37	chr7	141464496	141464496	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaagaggagtgagtattatCtgatccatgttcttgggact	12	5	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141464496	G	G	141464496	3	3	129	1	0	0	0	0	1	0	0	0	15691	912	32	4	540	4	TAS2R3	7	141464496	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1807128	141464496	17674167	470	116392											
MGAM	8972	broad.mit.edu	37	chr7	141754727	141754727	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtgagtggcttctagtgtGactcagagttgatggctacc	13	7	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141754727	T	T	141754727	1	4	129	0	1	0	0	0	0	0	0	0	9634	1305	45	3		3	MGAM	7	141754727	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	290231	141754727	17383936	471	116393											
EPHB6	2051	broad.mit.edu	37	chr7	142563293	142563293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcaccatgccctgcccGcagtcacgctcccaacccag	7	21	2	0	rs143088751		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142563293	A	A	142563293	3	1	129	1	0	0	0	0	1	0	0	0	5220	1087	38	4	1024	4	EPHB6	7	142563293	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	808566	142563293	16575370	472	116394											
TAS2R39	259285	broad.mit.edu	37	chr7	142881181	142881181	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgactcctctgatcatgTtcatcctgacagccaccctg	7	14	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142881181	C	C	142881181	3	2	129	1	0	0	0	0	1	0	0	0	15695	1725	60	5	672	5	TAS2R39	7	142881181	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	317888	142881181	16257482	473	116395											
TPK1	27010	broad.mit.edu	37	chr7	144364957	144364957	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctgatacccaagaaagaCaaaggcatgatcagagtgtg	12	7	1	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144364957	T	T	144364957	1	4	129	0	1	0	0	0	0	0	0	0	16528	493	17	4		4	TPK1	7	144364957	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1483776	144364957	14773706	474	116396											
EZH2	2146	broad.mit.edu	37	chr7	148544506	148544506	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgaagaaatgacacatatTacactgttggcatttacaga	8	6	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148544506	C	C	148544506	1	2	129	0	1	0	0	0	0	0	0	0	5377	1769	61	5		5	EZH2	7	148544506	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	4179549	148544506	10594157	475	116397											
ZNF425	155054	broad.mit.edu	37	chr7	148801711	148801711	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcggaaacttttgttacactCgggacacgaaaagggcttct	11	9	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148801711	A	A	148801711	4	1	129	1	0	0	0	0	0	1	0	0	18026	893	31	3	1010	3	ZNF425	7	148801711	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	257205	148801711	10336952	476	116398											
SSPO	23145	broad.mit.edu	37	chr7	149492429	149492429	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggggcccagccctcagggAtggcacgctggaggggatgc	18	12	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149492429	T	T	149492429	2	4	129	1	0	0	0	0	0	0	0	1	15307	320	12	5		5	SSPO	7	149492429	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	690718	149492429	9646234	477	116399											
GIMAP1	170575	broad.mit.edu	37	chr7	150417566	150417566	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaggaaggaggacctggcCgggggctccctgcacgatta	15	12	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150417566	T	T	150417566	2	4	129	1	0	0	0	0	0	0	0	1	6443	639	23	4		4	GIMAP1	7	150417566	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	925137	150417566	8721097	478	116400											
MLL3	58508	broad.mit.edu	37	chr7	151845608	151845608	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcatccactagtggcaccCgtcttgtgacagaagacaca	10	12	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151845608	A	A	151845608	2	1	129	1	0	0	0	0	0	0	0	1	9715	639	23	1		1	MLL3	7	151845608	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1428042	151845608	7293055	479	116401											
MLL3	58508	broad.mit.edu	37	chr7	151876995	151876995	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcttttgggaaaacagCatatctaggtcctaaaggag	10	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151876995	T	T	151876995	3	4	129	1	0	0	0	0	1	0	0	0	9715	710	25	4	7461	4	MLL3	7	151876995	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	31387	151876995	7261668	480	116402											
DPP6	1804	broad.mit.edu	37	chr7	154598682	154598682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctccgcccacattcacaCctgcgtcctttgctcttcca	4	20	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154598682	A	A	154598682	1	1	129	0	1	0	0	0	0	0	0	0	4770	522	18	3		3	DPP6	7	154598682	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2721687	154598682	4539981	481	116403											
MYOM2	9172	broad.mit.edu	37	chr8	2040076	2040076	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttccaaagcccccagtcTggctgtccagttccctgtga	8	15	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2040076	G	G	2040076	1	3	129	0	1	0	0	0	0	0	0	0	10186	1595	55	5		5	MYOM2	8	2040076	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08		2040076	144323946	482	116404											
CSMD1	64478	broad.mit.edu	37	chr8	3063023	3063023	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatacaaggacatcctTaccgaattcctttggtaccg	6	10	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3063023	A	A	3063023	1	1	129	0	1	0	0	0	0	0	0	0	3978	1769	61	5		5	CSMD1	8	3063023	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1022947	3063023	143300999	483	116405											
C8orf74	203076	broad.mit.edu	37	chr8	10555137	10555137	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attactgaggctgtgacgatCctggggaacaagcttagaga	13	7	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10555137	A	A	10555137	2	1	129	1	0	0	0	0	0	0	0	1	2462	845	30	3		3	C8orf74	8	10555137	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	7492114	10555137	135808885	484	116406											
PIWIL2	55124	broad.mit.edu	37	chr8	22161574	22161574	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataaagaacacttccaggatGagtgtactaagcttctggtt	9	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22161574	A	A	22161574	3	1	129	1	0	0	0	0	1	0	0	0	12053	1291	45	4	1260	4	PIWIL2	8	22161574	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	11606437	22161574	124202448	485	116407											
GPR124	25960	broad.mit.edu	37	chr8	37688297	37688297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtgttccagggggatcGgctgcccttccagtgctctg	15	11	1	0	rs141569533		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37688297	T	T	37688297	3	4	129	1	0	0	0	0	1	0	0	0	6703	1116	39	1	793	1	GPR124	8	37688297	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	15526723	37688297	108675725	486	116408											
ANK1	286	broad.mit.edu	37	chr8	41554116	41554116	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagaaacctaggagtggGgcagatgcacgttgggcttc	14	10	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41554116	A	A	41554116	1	1	129	0	1	0	0	0	0	0	0	0	620	1247	43	4		4	ANK1	8	41554116	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3865819	41554116	104809906	487	116409											
PRKDC	5591	broad.mit.edu	37	chr8	48710725	48710725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcactgcacacactaacgCgtttgaatataaataagcgt	7	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48710725	A	A	48710725	1	1	129	0	1	0	0	0	0	0	0	0	12627	783	27	3		3	PRKDC	8	48710725	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	7156609	48710725	97653297	488	116410											
SNTG1	54212	broad.mit.edu	37	chr8	51442842	51442843	+	Intron	DNP	CA	AG	AG													aagatgacccaggcatagctCagattaataaggagataaca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	51442843	AG	AG	51442842	1	1	129	0	1	0	0	0	0	0	0	0	14988	841	29	3		3	SNTG1	8	51442842	Intron	DNP	CA	TCGA-44-6777-01A-11D-1855-08	2732117	51442842	94921180	489	116411											
PXDNL	137902	broad.mit.edu	37	chr8	52336295	52336295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatctgcacaccttcctaGggagcaaaaaagagttgcca	9	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52336295	T	T	52336295	1	4	129	0	1	0	0	0	0	0	0	0	12956	1015	35	2		2	PXDNL	8	52336295	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	893453	52336295	94027727	490	116412											
RB1CC1	9821	broad.mit.edu	37	chr8	53580640	53580640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagcaatcatctggtccaGggcgtagagccgatcttcaa	11	11	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53580640	T	T	53580640	3	4	129	1	0	0	0	0	1	0	0	0	13207	991	35	2	3738	2	RB1CC1	8	53580640	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1244345	53580640	92783382	491	116413											
TCEA1	6917	broad.mit.edu	37	chr8	54934578	54934578	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggccccctcgggccggacCgcggcccggcctccctcccg	14	23	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54934578	T	T	54934578	1	4	129	0	1	0	0	0	0	0	0	0	15789	667	23	4		4	TCEA1	8	54934578	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1353938	54934578	91429444	492	116414											
SDR16C5	195814	broad.mit.edu	37	chr8	57228653	57228653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgtggctccagcttccCgagccatcttacatgtttcc	7	15	2	0	rs141509977		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57228653	A	A	57228653	3	1	129	1	0	0	0	0	1	0	0	0	14084	652	23	1	699	1	SDR16C5	8	57228653	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2294075	57228653	89135369	493	116415											
UBXN2B	137886	broad.mit.edu	37	chr8	59339010	59339010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcctgactttgtgatccGccctcctcagcctcccaaag	6	17	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59339010	T	T	59339010	1	4	129	0	1	0	0	0	0	0	0	0	17041	1102	38	3		3	UBXN2B	8	59339010	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2110357	59339010	87025012	494	116416											
CSPP1	79848	broad.mit.edu	37	chr8	68070788	68070788	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggcacgaattcagcaggAgtatgaagaggaacaggaaa	15	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68070788	C	C	68070788	3	2	129	1	0	0	0	0	1	0	0	0	3996	304	11	5	2516	5	CSPP1	8	68070788	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	8731778	68070788	78293234	495	116417											
KCNB2	9312	broad.mit.edu	37	chr8	73479987	73479987	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatggcagaaaaggctccCccgggcttaaacaggaagac	11	10	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73479987	A	A	73479987	2	1	129	1	0	0	0	0	0	0	0	1	8083	610	22	2		2	KCNB2	8	73479987	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	5409199	73479987	72884035	496	116418											
SNX16	64089	broad.mit.edu	37	chr8	82720636	82720636	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggttgtggaggtgttttcGgtgggaatgacaactttggt	17	3	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82720636	A	A	82720636	1	1	129	0	1	0	0	0	0	0	0	0	15001	1131	39	4		4	SNX16	8	82720636	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	9240649	82720636	63643386	497	116419											
CNGB3	54714	broad.mit.edu	37	chr8	87587995	87587996	+	3'UTR	DNP	GG	TT	TT													tcctaggtacaatcactttgGgaactagctatatcacatct							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	87587996	TT	TT	87587995	1	4	129	0	1	0	0	0	0	0	0	0	3633	1247	43	2		2	CNGB3	8	87587995	3'UTR	DNP	GG	TCGA-44-6777-01A-11D-1855-08	4867359	87587995	58776027	498	116420											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885671	88885671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatctggaaactgcaaaGcatgccaggccgacgcattc	12	11	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885671	T	T	88885671	3	4	129	1	0	0	0	0	1	0	0	0	4305	971	34	3	662	3	DCAF4L2	8	88885671	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1297676	88885671	57478351	499	116421											
KIAA1429	25962	broad.mit.edu	37	chr8	95507124	95507124	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctatctcttcagcctgaaaTggagtgaaccacatagattt	7	9	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95507124	A	A	95507124	2	1	129	1	0	0	0	0	0	0	0	1	8301	1451	51	5		5	KIAA1429	8	95507124	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	6621453	95507124	50856898	500	116422											
SLC25A32	81034	broad.mit.edu	37	chr8	104412574	104412574	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgcagaattcttcttttaTgccttaaacacaaaagagct	5	8	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104412574	A	A	104412574	1	1	129	0	1	0	0	0	0	0	0	0	14610	1479	51	5		5	SLC25A32	8	104412574	3'UTR	SNP	T	TCGA-44-6777-01A-11D-1855-08	8905450	104412574	41951448	501	116423											
PKHD1L1	93035	broad.mit.edu	37	chr8	110498869	110498869	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caataatctagctgcctttaTactgcagctgaaaaatacca	5	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110498869	C	C	110498869	1	2	129	0	1	0	0	0	0	0	0	0	12067	1421	49	5		5	PKHD1L1	8	110498869	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	6086295	110498869	35865153	502	116424											
PKHD1L1	93035	broad.mit.edu	37	chr8	110520333	110520333	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catatgtttctaggaattatTagagattcaacctgtaagta	7	5	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110520333	G	G	110520333	3	3	129	1	0	0	0	0	1	0	0	0	12067	1742	61	5	11513	5	PKHD1L1	8	110520333	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	21464	110520333	35843689	503	116425											
CSMD3	114788	broad.mit.edu	37	chr8	113299475	113299475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgtcccagtagcatcaCctgcaatgcagtacagttca	7	13	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113299475	A	A	113299475	3	1	129	1	0	0	0	0	1	0	0	0	3980	521	18	3	2030	3	CSMD3	8	113299475	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2779142	113299475	33064547	504	116426											
CSMD3	114788	broad.mit.edu	37	chr8	113323147	113323147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagtgatccaaataaaaaCgttaaatggtgctaatctca	7	6	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113323147	A	A	113323147	1	1	129	0	1	0	0	0	0	0	0	0	3980	551	19	3		3	CSMD3	8	113323147	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	23672	113323147	33040875	505	116427											
ENPP2	5168	broad.mit.edu	37	chr8	120596124	120596124	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatttatgaatactgtacaaCttcactcacaccaccattac	2	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120596124	G	G	120596124	1	3	129	0	1	0	0	0	0	0	0	0	5172	580	20	4		4	ENPP2	8	120596124	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	7272977	120596124	25767898	506	116428											
TAF2	6873	broad.mit.edu	37	chr8	120843891	120843891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatagtggacttgttactaTttataattgttgagaataaa	7	2	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120843891	A	A	120843891	1	1	129	0	1	0	0	0	0	0	0	0	15643	1508	52	5		5	TAF2	8	120843891	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	247767	120843891	25520131	507	116429											
ANXA13	312	broad.mit.edu	37	chr8	124701206	124701206	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgcagcgaaaaccaaaatCaactgttattccaggtttgc	8	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124701206	G	G	124701206	1	3	129	0	1	0	0	0	0	0	0	0	717	841	29	4		4	ANXA13	8	124701206	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3857315	124701206	21662816	508	116430											
FER1L6	654463	broad.mit.edu	37	chr8	124982199	124982199	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggtttgaatgacaaagatCtaaatccactccaaggacag	8	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124982199	G	G	124982199	1	3	129	0	1	0	0	0	0	0	0	0	5872	928	32	4		4	FER1L6	8	124982199	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	280993	124982199	21381823	509	116431											
FER1L6	654463	broad.mit.edu	37	chr8	125076835	125076835	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagactaaaatccctctcTatatttacaaggctcattgg	6	10	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125076835	C	C	125076835	1	2	129	0	1	0	0	0	0	0	0	0	5872	1537	53	5		5	FER1L6	8	125076835	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	94636	125076835	21287187	510	116432											
ADCY8	114	broad.mit.edu	37	chr8	131826459	131826459	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaaaggaagtccaggcgGgctgtgtactccagctgcag	14	12	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131826459	T	T	131826459	2	4	129	1	0	0	0	0	0	0	0	1	300	1219	43	2		2	ADCY8	8	131826459	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	6749624	131826459	14537563	511	116433											
TMEM71	137835	broad.mit.edu	37	chr8	133764161	133764161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggagtctgggacttcggcGacaggtatagtgggagcctg	18	7	1	0	rs149569607	byFrequency;by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133764161	T	T	133764161	3	4	129	1	0	0	0	0	1	0	0	0	16323	1058	37	3	731	3	TMEM71	8	133764161	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1937702	133764161	12599861	512	116434											
TRAPPC9	83696	broad.mit.edu	37	chr8	141262908	141262908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaggagattctcctggCaggagaaatccagcttcact	10	12	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141262908	A	A	141262908	3	1	129	1	0	0	0	0	1	0	0	0	16589	710	25	3	1079	3	TRAPPC9	8	141262908	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	7498747	141262908	5101114	513	116435											
EIF2C2	27161	broad.mit.edu	37	chr8	141570642	141570642	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaccccaccccgcctcccgtCagatgtgtcttccggaagga	10	17	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141570642	G	G	141570642	1	3	129	0	1	0	0	0	0	0	0	0	5046	841	29	4		4	EIF2C2	8	141570642	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	307734	141570642	4793380	514	116436											
FOXD4	2298	broad.mit.edu	37	chr9	118160	118160	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcaggggatgtggcggccgGatcacctggccccggcgggc	19	14	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118160	T	T	118160	1	4	129	0	1	0	0	0	0	0	0	0	6057	1189	41	3		3	FOXD4	9	118160	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08		118160	141095271	515	116437											
PTPRD	5789	broad.mit.edu	37	chr9	8483987	8483987	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaactcggatagcaaaacTgggagtctgagcagaagaat	12	6	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8483987	C	C	8483987	1	2	129	0	1	0	0	0	0	0	0	0	12907	1595	55	5		5	PTPRD	9	8483987	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	8365827	8483987	132729444	516	116438											
TTC39B	158219	broad.mit.edu	37	chr9	15187037	15187037	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaacacataagttgccttGagaaaaagaaggagcttatt	9	5	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15187037	C	C	15187037	1	2	129	0	1	0	0	0	0	0	0	0	16834	1305	45	4		4	TTC39B	9	15187037	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	6703050	15187037	126026394	517	116439											
FAM154A	158297	broad.mit.edu	37	chr9	18950803	18950803	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggccctttctggtactcCcgccttggcttgaaggactc	10	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18950803	T	T	18950803	2	4	129	1	0	0	0	0	0	0	0	1	5509	610	22	4		4	FAM154A	9	18950803	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	3763766	18950803	122262628	518	116440											
RECK	8434	broad.mit.edu	37	chr9	36059964	36059964	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctcagctttgttccccccGaatagctgattgatgtgcct	8	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36059964	T	T	36059964	1	4	129	0	1	0	0	0	0	0	0	0	13308	1073	37	3		3	RECK	9	36059964	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	17109161	36059964	105153467	519	116441											
PRUNE2	158471	broad.mit.edu	37	chr9	79318919	79318919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgatcttcattcttctctGtacatctttcttccttgtat	4	11	6	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79318919	T	T	79318919	3	4	129	1	0	0	0	0	1	0	0	0	12747	1377	48	3	1700	3	PRUNE2	9	79318919	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	43258955	79318919	61894512	520	116442											
CYLC2	1539	broad.mit.edu	37	chr9	105768193	105768193	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaagacttgaagaatacAtatacttatattcggggata	8	4	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105768193	G	G	105768193	1	3	129	0	1	0	0	0	0	0	0	0	4175	232	8	5		5	CYLC2	9	105768193	3'UTR	SNP	A	TCGA-44-6777-01A-11D-1855-08	26449274	105768193	35445238	521	116443											
ZNF462	58499	broad.mit.edu	37	chr9	109690725	109690725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggacattgacatcaaccCaggtgccgtctacaaatgca	8	13	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109690725	A	A	109690725	3	1	129	1	0	0	0	0	1	0	0	0	18053	594	21	2	4538	2	ZNF462	9	109690725	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3922532	109690725	31522706	522	116444											
LPAR1	1902	broad.mit.edu	37	chr9	113704241	113704241	+	Frame_Shift_Del	DEL	A	-	-													cagattagccattaggtaatAaataggaaaatggaagcggc							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113704241	-	-	113704241	7	5	129	1	0	1	0	1	0	0	0	0	8991	362	13	0	849	0	LPAR1	9	113704241	Frame_Shift_Del	DEL	A	TCGA-44-6777-01A-11D-1855-08	4013516	113704241	27509190	523	116445											
RGS3	5998	broad.mit.edu	37	chr9	116270673	116270673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctctcccagcctcctcCctcagctggttaccagaact	6	17	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116270673	A	A	116270673	1	1	129	0	1	0	0	0	0	0	0	0	13415	638	22	2		2	RGS3	9	116270673	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2566432	116270673	24942758	524	116446											
TLR4	7099	broad.mit.edu	37	chr9	120475379	120475379	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgactattgaaagggtaaaaGacttttcttataatttcgga	8	4	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120475379	T	T	120475379	3	4	129	1	0	0	0	0	1	0	0	0	16076	942	33	3	983	3	TLR4	9	120475379	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	4204706	120475379	20738052	525	116447											
RABGAP1	23637	broad.mit.edu	37	chr9	125832755	125832755	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatggcctccctcagcttaTactaaccttaggcttgagca	7	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125832755	C	C	125832755	1	2	129	0	1	0	0	0	0	0	0	0	13072	1421	49	5		5	RABGAP1	9	125832755	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	5357376	125832755	15380676	526	116448											
RABEPK	10244	broad.mit.edu	37	chr9	127990243	127990243	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcctccatctccccggcAtggtcatgtgatggtggcag	11	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127990243	G	G	127990243	3	3	129	1	0	0	0	0	1	0	0	0	13071	217	8	5	599	5	RABEPK	9	127990243	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	2157488	127990243	13223188	527	116449											
CIZ1	25792	broad.mit.edu	37	chr9	130941408	130941408	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagctgtggctgcacctGcttctgttgcagcactaagt	11	12	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130941408	A	A	130941408	4	1	129	1	0	0	0	0	0	1	0	0	3472	1328	46	4	1658	4	CIZ1	9	130941408	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2951165	130941408	10272023	528	116450											
NUP214	8021	broad.mit.edu	37	chr9	134008552	134008552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtatgctgctgcagatGggaccctggaaacgtctcca	12	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134008552	T	T	134008552	3	4	129	1	0	0	0	0	1	0	0	0	10857	1348	47	2	813	2	NUP214	9	134008552	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3067144	134008552	7204879	529	116451											
ADAMTS13	11093	broad.mit.edu	37	chr9	136290614	136290614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggctggcaatgcccacCcgacgggttacctctctcat	11	15	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136290614	A	A	136290614	1	1	129	0	1	0	0	0	0	0	0	0	258	638	22	2		2	ADAMTS13	9	136290614	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2282062	136290614	4922817	530	116452											
COBRA1	25920	broad.mit.edu	37	chr9	140151270	140151270	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcagcctgtggtgtcAtgtaggttccggagaaaaaa	13	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140151270	T	T	140151270	1	4	129	0	1	0	0	0	0	0	0	0	3687	232	8	5		5	COBRA1	9	140151270	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	3860656	140151270	1062161	531	116453											
ZMYND19	116225	broad.mit.edu	37	chr9	140483037	140483037	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctcttgcagcacaggggaGagagctcgttcctcgtgacc	13	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140483037	A	A	140483037	1	1	129	0	1	0	0	0	0	0	0	0	17836	957	33	4		4	ZMYND19	9	140483037	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	331767	140483037	730394	532	116454											
EHMT1	79813	broad.mit.edu	37	chr9	140646769	140646769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggttcccgcttcgactGtgtggctgatcagatggacg	14	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140646769	T	T	140646769	1	4	129	0	1	0	0	0	0	0	0	0	5023	1392	48	3		3	EHMT1	9	140646769	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	163732	140646769	566662	533	116455											
PFKFB3	5209	broad.mit.edu	37	chr10	6258251	6258251	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacctgtgcctctggccctGagggtggaggaaagcaggtg	17	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6258251	A	A	6258251	1	1	129	0	1	0	0	0	0	0	0	0	11857	1305	45	4		4	PFKFB3	10	6258251	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08		6258251	129276496	534	116456											
TAF3	83860	broad.mit.edu	37	chr10	8019213	8019213	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacttccacagataaaagtgGaaccagtcgctctggccccg	9	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8019213	T	T	8019213	4	4	129	1	0	0	0	0	0	1	0	0	15644	1175	41	3	2256	3	TAF3	10	8019213	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1760962	8019213	127515534	535	116457											
GATA3	2625	broad.mit.edu	37	chr10	8100177	8100177	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaaaaggaggccgatgCgaggtagagattccccaggt	15	8	0	2	rs148810744	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8100177	G	G	8100177	1	3	129	0	1	0	0	0	0	0	0	0	6317	783	27	4		4	GATA3	10	8100177	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	80964	8100177	127434570	536	116458											
CDNF	441549	broad.mit.edu	37	chr10	14862181	14862181	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatggcaaaaaggaaaaaagCcaattacaaaataaatggaa	7	4	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14862181	G	G	14862181	1	3	129	0	1	0	0	0	0	0	0	0	3198	754	26	4		4	CDNF	10	14862181	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	6762004	14862181	120672566	537	116459											
ITGA8	8516	broad.mit.edu	37	chr10	15646286	15646286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttcatatgctccttccCcttcatttcttgcatttatt	3	13	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15646286	A	A	15646286	3	1	129	1	0	0	0	0	1	0	0	0	7952	623	22	2	1196	2	ITGA8	10	15646286	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	784105	15646286	119888461	538	116460											
RSU1	6251	broad.mit.edu	37	chr10	16794557	16794557	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagttctgggggcagaacGgtgaggcggttcccctgaat	15	10	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16794557	T	T	16794557	2	4	129	1	0	0	0	0	0	0	0	1	13827	1103	39	1		1	RSU1	10	16794557	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1148271	16794557	118740190	539	116461											
CUBN	8029	broad.mit.edu	37	chr10	17026057	17026057	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcatttcatgaaatttaaCgagggctcggcttaagtact	9	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17026057	G	G	17026057	1	3	129	0	1	0	0	0	0	0	0	0	4084	551	19	4		4	CUBN	10	17026057	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	231500	17026057	118508690	540	116462											
TRDMT1	1787	broad.mit.edu	37	chr10	17204260	17204260	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggggtaaaaaaaaaaaaaAacaaaaaaaaacacagaaag	6	3	0	1	rs61159799	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17204260	C	C	17204260	1	2	129	0	1	0	0	0	0	0	0	0	16591	29	1	5		5	TRDMT1	10	17204260	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	178203	17204260	118330487	541	116463											
NEBL	10529	broad.mit.edu	37	chr10	21129659	21129659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctaaggtgttaaataaaCatactcacctcacttgccat	4	11	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21129659	A	A	21129659	1	1	129	0	1	0	0	0	0	0	0	0	10398	493	17	3		3	NEBL	10	21129659	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3925399	21129659	114405088	542	116464											
PTF1A	256297	broad.mit.edu	37	chr10	23482676	23482676	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattatggcctccctcccctAgcaggacactctctctcatg	7	16	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23482676	G	G	23482676	2	3	129	1	0	0	0	0	0	0	0	1	12846	407	15	5		5	PTF1A	10	23482676	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	2353017	23482676	112052071	543	116465											
GPR158	57512	broad.mit.edu	37	chr10	25887611	25887611	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacctgacccctggtcctgTgccttcagaatcaaaagttc	8	13	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887611	A	A	25887611	3	1	129	1	0	0	0	0	1	0	0	0	6728	1696	59	5	3098	5	GPR158	10	25887611	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	2404935	25887611	109647136	544	116466											
PARD3	56288	broad.mit.edu	37	chr10	34690786	34690786	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtatatgctccaaaccCgtgtcagcatgtccaacagg	10	11	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34690786	A	A	34690786	2	1	129	1	0	0	0	0	0	0	0	1	11537	639	23	1		1	PARD3	10	34690786	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	8803175	34690786	100843961	545	116467											
RBP3	5949	broad.mit.edu	37	chr10	48389623	48389623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagtgcttgccggatagcctCgtcctcaggcaactctgggg	13	13	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48389623	T	T	48389623	3	4	129	1	0	0	0	0	1	0	0	0	13265	893	31	4	2504	4	RBP3	10	48389623	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	13698837	48389623	87145124	546	116468											
IPMK	253430	broad.mit.edu	37	chr10	59972626	59972626	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtacctttgccctcgggAccttcagcagaggcatttcc	10	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59972626	C	C	59972626	1	2	129	0	1	0	0	0	0	0	0	0	7862	290	10	5		5	IPMK	10	59972626	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	11583003	59972626	75562121	547	116469											
HERC4	26091	broad.mit.edu	37	chr10	69714383	69714383	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaaatgagcctggaatctTcataatacctaaacatgccg	6	11	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69714383	A	A	69714383	3	1	129	1	0	0	0	0	1	0	0	0	7127	1783	62	5	871	5	HERC4	10	69714383	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	9741757	69714383	65820364	548	116470											
RUFY2	55680	broad.mit.edu	37	chr10	70154089	70154089	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcactttcacttacttgtGagtctaaatcctctcccttc	4	13	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70154089	C	C	70154089	4	2	129	1	0	0	0	0	0	1	0	0	13850	1294	45	4	1471	4	RUFY2	10	70154089	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	439706	70154089	65380658	549	116471											
DDX50	79009	broad.mit.edu	37	chr10	70694186	70694186	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatttaatttacaacataTtgcttgggatgtgaaaaata	6	6	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70694186	G	G	70694186	1	3	129	0	1	0	0	0	0	0	0	0	4401	1508	52	5		5	DDX50	10	70694186	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	540097	70694186	64840561	550	116472											
P4HA1	5033	broad.mit.edu	37	chr10	74803549	74803549	+	Intron	DEL	A	-	-													acatctatgcctaaccacctAggtcttagaaactatatcat							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74803549	-	-	74803549	6	5	129	0	1	1	0	1	0	0	0	0	11450	435	15	0		0	P4HA1	10	74803549	Intron	DEL	A	TCGA-44-6777-01A-11D-1855-08	4109363	74803549	60731198	551	116473											
CAMK2G	818	broad.mit.edu	37	chr10	75587728	75587728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggccacacctgcccacaCagcacagacatgcagtgagg	10	15	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75587728	A	A	75587728	1	1	129	0	1	0	0	0	0	0	0	0	2628	493	17	3		3	CAMK2G	10	75587728	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	784179	75587728	59947019	552	116474											
ADK	132	broad.mit.edu	37	chr10	76131436	76131436	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaagtgatggcatccacatCgtaaatctgaagaggacctg	10	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76131436	G	G	76131436	1	3	129	0	1	0	0	0	0	0	0	0	320	899	31	4		4	ADK	10	76131436	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	543708	76131436	59403311	553	116475											
LIPK	643414	broad.mit.edu	37	chr10	90488429	90488429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcgaggagagcccgctGgagtctgggacgcagagcag	20	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90488429	T	T	90488429	1	4	129	0	1	0	0	0	0	0	0	0	8900	1363	47	2		2	LIPK	10	90488429	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	14356993	90488429	45046318	554	116476											
OPALIN	93377	broad.mit.edu	37	chr10	98113280	98113280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcaaagcaaaatggttgGttgctctacacgggatcaaa	11	8	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98113280	T	T	98113280	1	4	129	0	1	0	0	0	0	0	0	0	10967	1276	44	3		3	OPALIN	10	98113280	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7624851	98113280	37421467	555	116477											
PIK3AP1	118788	broad.mit.edu	37	chr10	98411383	98411383	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtctccagaatatatcttCagagaaacgttcccagatga	7	9	3	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98411383	T	T	98411383	2	4	129	1	0	0	0	0	0	0	0	1	12003	813	29	4		4	PIK3AP1	10	98411383	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	298103	98411383	37123364	556	116478											
ZDHHC16	84287	broad.mit.edu	37	chr10	99214673	99214673	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactgctctagtctaacttAggttggcagagagccagcac	10	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99214673	C	C	99214673	1	2	129	0	1	0	0	0	0	0	0	0	17732	435	15	5		5	ZDHHC16	10	99214673	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	803290	99214673	36320074	557	116479											
CCDC147	159686	broad.mit.edu	37	chr10	106166457	106166457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggacaggccagcgaccCcaatgcatatgagctgatac	10	13	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106166457	A	A	106166457	3	1	129	1	0	0	0	0	1	0	0	0	2807	623	22	2	2220	2	CCDC147	10	106166457	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6951784	106166457	29368290	558	116480											
SORCS3	22986	broad.mit.edu	37	chr10	106918652	106918652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttctccattttagccCttctgttccttacatctgca	3	13	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106918652	A	A	106918652	2	1	129	1	0	0	0	0	0	0	0	1	15046	668	24	2		2	SORCS3	10	106918652	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	752195	106918652	28616095	559	116481											
SORCS3	22986	broad.mit.edu	37	chr10	106960956	106960956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgccctgggccgagacCactcaggatcagtggtctca	13	12	3	1	rs145883987		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106960956	A	A	106960956	3	1	129	1	0	0	0	0	1	0	0	0	15046	594	21	2	2268	2	SORCS3	10	106960956	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	42304	106960956	28573791	560	116482											
SORCS3	22986	broad.mit.edu	37	chr10	106976592	106976592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagccctttgggaaagaCtatgggtcatcagaggttga	12	7	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106976592	A	A	106976592	1	1	129	0	1	0	0	0	0	0	0	0	15046	580	20	3		3	SORCS3	10	106976592	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	15636	106976592	28558155	561	116483											
SMNDC1	10285	broad.mit.edu	37	chr10	112053973	112053973	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattgtgtcataggtttatCagcaattccacaggttccta	7	8	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112053973	G	G	112053973	3	3	129	1	0	0	0	0	1	0	0	0	14913	826	29	4	68	4	SMNDC1	10	112053973	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	5077381	112053973	23480774	562	116484											
SLC18A2	6571	broad.mit.edu	37	chr10	119012998	119012998	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgttttccttctgagtgTgggtctcatcagggtgggca	15	7	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119012998	A	A	119012998	1	1	129	0	1	0	0	0	0	0	0	0	14539	1711	59	5		5	SLC18A2	10	119012998	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	6959025	119012998	16521749	563	116485											
PRLHR	2834	broad.mit.edu	37	chr10	120353949	120353949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcgccggcgccgagcgcGgtcccagtcggcctggctct	17	16	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120353949	T	T	120353949	3	4	129	1	0	0	0	0	1	0	0	0	12636	1116	39	1	308	1	PRLHR	10	120353949	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1340951	120353949	15180798	564	116486											
C10orf119	79892	broad.mit.edu	37	chr10	121595096	121595096	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattccaagaatctcaaaaGagttagataaatgcggaatt	7	5	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121595096	C	C	121595096	3	2	129	1	0	0	0	0	1	0	0	0	1599	942	33	4	271	4	C10orf119	10	121595096	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1241147	121595096	13939651	565	116487											
BNIP3	664	broad.mit.edu	37	chr10	133784503	133784503	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtcaatgttaaaggcagaTcagtgtaccacacgtgacac	9	9	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133784503	A	A	133784503	1	1	129	0	1	0	0	0	0	0	0	0	1484	1450	50	5		5	BNIP3	10	133784503	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	12189407	133784503	1750244	566	116488											
NKX6-2	84504	broad.mit.edu	37	chr10	134598451	134598451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgcgccgccgccgcacGggctgaccagcgccaagttc	12	21	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134598451	T	T	134598451	3	4	129	1	0	0	0	0	1	0	0	0	10553	1116	39	1	34	1	NKX6-2	10	134598451	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	813948	134598451	936296	567	116489											
PRAP1	118471	broad.mit.edu	37	chr10	135165834	135165834	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgacagcctgtaccaccctCcgcctgaggaggaccagggc	12	15	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135165834	G	G	135165834	3	3	129	1	0	0	0	0	1	0	0	0	12547	855	30	4	364	4	PRAP1	10	135165834	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	567383	135165834	368913	568	116490											
SYCE1	93426	broad.mit.edu	37	chr10	135368857	135368857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacttctggggcttaccaCatctcctgggccagcctctt	8	17	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135368857	A	A	135368857	3	1	129	1	0	0	0	0	1	0	0	0	15546	478	17	3	190	3	SYCE1	10	135368857	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	203023	135368857	165890	569	116491											
MUC6	4588	broad.mit.edu	37	chr11	1018049	1018049	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggacctgtggaagagaaGggactgctccctgtaggtgg	17	7	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1018049	T	T	1018049	2	4	129	1	0	0	0	0	0	0	0	1	10074	987	35	2		2	MUC6	11	1018049	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08		1018049	133988467	570	116492											
KRTAP5-4	387267	broad.mit.edu	37	chr11	1643150	1643150	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggcacacagcagcacacAggtttgcagcagcagatggg	14	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1643150	G	G	1643150	1	3	129	0	1	0	0	0	0	0	0	0	8635	175	7	5		5	KRTAP5-4	11	1643150	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	625101	1643150	133363366	571	116493											
OR52B4	143496	broad.mit.edu	37	chr11	4389086	4389087	+	Frame_Shift_Ins	INS	-	A	A													tctcagagagacagtcacacINSaaattttcttgatcagagca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4389087	A	A	4389086	7	5	129	1	0	1	1	0	0	0	0	0	11206	478	17	0	508	0	OR52B4	11	4389086	Frame_Shift_Ins	INS	-	TCGA-44-6777-01A-11D-1855-08	2745936	4389086	130617430	572	116494											
HBD	3045	broad.mit.edu	37	chr11	5254362	5254362	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatacatgcatatggttaaCagagaaataaagactggctt	9	5	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5254362	T	T	5254362	1	4	129	0	1	0	0	0	0	0	0	0	7045	493	17	4		4	HBD	11	5254362	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	865276	5254362	129752154	573	116495											
OR2D3	120775	broad.mit.edu	37	chr11	6942680	6942680	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagcccctgtactactctAccatcatgacacaacgggtg	8	14	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6942680	G	G	6942680	3	3	129	1	0	0	0	0	1	0	0	0	11089	391	14	5	450	5	OR2D3	11	6942680	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1688318	6942680	128063836	574	116496											
OR10A6	390093	broad.mit.edu	37	chr11	7949730	7949730	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaactagatacccatgaTgtttgaacagtacctaacat	7	8	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7949730	C	C	7949730	2	2	129	1	0	0	0	0	0	0	0	1	10988	1451	51	5		5	OR10A6	11	7949730	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	1007050	7949730	127056786	575	116497											
TUB	7275	broad.mit.edu	37	chr11	8060490	8060490	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacagggattttgttcccaGgaggcactccctggcccatg	12	12	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8060490	A	A	8060490	3	1	129	1	0	0	0	0	1	0	0	0	16868	1001	35	4	72	4	TUB	11	8060490	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	110760	8060490	126946026	576	116498											
ST5	6764	broad.mit.edu	37	chr11	8715638	8715638	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggactctgctactgagaagGaggcttaattcttcttgtgg	12	7	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8715638	A	A	8715638	1	1	129	0	1	0	0	0	0	0	0	0	15338	1189	41	4		4	ST5	11	8715638	3'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	655148	8715638	126290878	577	116499											
C11orf16	56673	broad.mit.edu	37	chr11	8950884	8950884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtatgacaaggccacccAgaggagcacgccagggagat	14	11	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8950884	G	G	8950884	1	3	129	0	1	0	0	0	0	0	0	0	1642	203	7	5		5	C11orf16	11	8950884	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	235246	8950884	126055632	578	116500											
DENND5A	23258	broad.mit.edu	37	chr11	9164867	9164867	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagcacatgggcctggaaGagcataacaagataatcgga	11	9	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9164867	T	T	9164867	1	4	129	0	1	0	0	0	0	0	0	0	4476	957	33	3		3	DENND5A	11	9164867	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	213983	9164867	125841649	579	116501											
CTR9	9646	broad.mit.edu	37	chr11	10781721	10781721	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgacttcattttatagcGgaagttcgtttaggaatggg	12	4	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10781721	A	A	10781721	2	1	129	1	0	0	0	0	0	0	0	1	4058	1130	39	4		4	CTR9	11	10781721	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1616854	10781721	124224795	580	116502											
PIK3C2A	5286	broad.mit.edu	37	chr11	17153472	17153472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcacttacagttcatccCatttaataagatagaagaaa	4	7	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17153472	A	A	17153472	3	1	129	1	0	0	0	0	1	0	0	0	12004	595	21	2	2926	2	PIK3C2A	11	17153472	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6371751	17153472	117853044	581	116503											
PTPN5	84867	broad.mit.edu	37	chr11	18754992	18754992	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccatccccacactcaggctCttcacaggagctggcaggag	10	16	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18754992	T	T	18754992	1	4	129	0	1	0	0	0	0	0	0	0	12899	928	32	4		4	PTPN5	11	18754992	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1601520	18754992	116251524	582	116504											
LUZP2	338645	broad.mit.edu	37	chr11	24936089	24936089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttattatttaaggtgaGtctcttttctctcttttccc	6	8	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24936089	T	T	24936089	1	4	129	0	1	0	0	0	0	0	0	0	9174	1044	36	3		3	LUZP2	11	24936089	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	6181097	24936089	110070427	583	116505											
ANO3	63982	broad.mit.edu	37	chr11	26465281	26465281	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgttatgcttttatttccCaaaactacaaagtatcttat	4	7	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26465281	T	T	26465281	1	4	129	0	1	0	0	0	0	0	0	0	698	609	21	4		4	ANO3	11	26465281	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1529192	26465281	108541235	584	116506											
MUC15	143662	broad.mit.edu	37	chr11	26582728	26582728	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtagtagctagaattccCaaaactcacatcataaggtt	6	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26582728	G	G	26582728	3	3	129	1	0	0	0	0	1	0	0	0	10066	594	21	4	119	4	MUC15	11	26582728	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	117447	26582728	108423788	585	116507											
DCDC1	341019	broad.mit.edu	37	chr11	31312426	31312426	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gataattttttaagtcaagtCaatatttggcttcaaaatta	5	4	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31312426	G	G	31312426	1	3	129	0	1	0	0	0	0	0	0	0	4317	841	29	4		4	DCDC1	11	31312426	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	4729698	31312426	103694090	586	116508											
SLC1A2	6506	broad.mit.edu	37	chr11	35287030	35287030	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaagaaatcaagcatgCactactatatacaagtctcg	5	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35287030	G	G	35287030	1	3	129	0	1	0	0	0	0	0	0	0	14545	725	25	4		4	SLC1A2	11	35287030	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3974604	35287030	99719486	587	116509											
PAMR1	25891	broad.mit.edu	37	chr11	35456100	35456100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatcccggtcatcatccCggtagaatttccccaaaaca	5	15	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35456100	A	A	35456100	3	1	129	1	0	0	0	0	1	0	0	0	11507	652	23	1	584	1	PAMR1	11	35456100	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	169070	35456100	99550416	588	116510											
RAG1	5896	broad.mit.edu	37	chr11	36596398	36596398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagaaggtacttctgcCaggctaccaccactttgagt	10	11	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36596398	A	A	36596398	3	1	129	1	0	0	0	0	1	0	0	0	13111	594	21	2	1546	2	RAG1	11	36596398	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1140298	36596398	98410118	589	116511											
HSD17B12	51144	broad.mit.edu	37	chr11	43852733	43852733	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcatgagtcatcggtggtgGaggccttttccactcgattc	12	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43852733	A	A	43852733	1	1	129	0	1	0	0	0	0	0	0	0	7448	1189	41	4		4	HSD17B12	11	43852733	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7256335	43852733	91153783	590	116512											
AMBRA1	55626	broad.mit.edu	37	chr11	46439359	46439359	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagaatgaggcaggctctaGatggattgacatttcccttc	11	8	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46439359	A	A	46439359	1	1	129	0	1	0	0	0	0	0	0	0	565	957	33	4		4	AMBRA1	11	46439359	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2586626	46439359	88567157	591	116513											
CKAP5	9793	broad.mit.edu	37	chr11	46786761	46786761	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggcccggatttgtcttcatCctcctttaagctggttttgc	9	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46786761	G	G	46786761	3	3	129	1	0	0	0	0	1	0	0	0	3476	855	30	4	2709	4	CKAP5	11	46786761	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	347402	46786761	88219755	592	116514											
FNBP4	23360	broad.mit.edu	37	chr11	47753978	47753978	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcccagcaccgctaacTgcagctgctctcagtctcca	8	18	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47753978	A	A	47753978	1	1	129	0	1	0	0	0	0	0	0	0	6025	1595	55	5		5	FNBP4	11	47753978	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	967217	47753978	87252538	593	116515											
OR4C6	219432	broad.mit.edu	37	chr11	55432933	55432933	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcaaaggctgcctcacCcagctgtttgtggagcattt	9	12	3	0	rs77687368	byFrequency;by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55432933	A	A	55432933	2	1	129	1	0	0	0	0	0	0	0	1	11146	610	22	2		2	OR4C6	11	55432933	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	7678955	55432933	79573583	594	116516											
OR5L1	219437	broad.mit.edu	37	chr11	55579770	55579770	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacaaagtggccaccgtGttctacacagtcgtgattcc	10	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55579770	T	T	55579770	2	4	129	1	0	0	0	0	0	0	0	1	11264	1364	48	3		3	OR5L1	11	55579770	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	146837	55579770	79426746	595	116517											
OR5I1	10798	broad.mit.edu	37	chr11	55703541	55703541	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggccaggatgaaggattcTgtatctgcaaaagtacagaa	12	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55703541	A	A	55703541	2	1	129	1	0	0	0	0	0	0	0	1	11258	1567	55	5		5	OR5I1	11	55703541	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	123771	55703541	79302975	596	116518											
LPXN	9404	broad.mit.edu	37	chr11	58318700	58318700	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgccagcatctgctctcacTgcaacctggcccaagggaag	10	14	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58318700	G	G	58318700	2	3	129	1	0	0	0	0	0	0	0	1	9016	1567	55	5		5	LPXN	11	58318700	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	2615159	58318700	76687816	597	116519											
MS4A5	64232	broad.mit.edu	37	chr11	60201330	60201330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcatcctagatcaaaaCtacatttgtggttattctca	6	8	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60201330	A	A	60201330	3	1	129	1	0	0	0	0	1	0	0	0	9957	564	20	3	446	3	MS4A5	11	60201330	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1882630	60201330	74805186	598	116520											
CD5	921	broad.mit.edu	37	chr11	60885907	60885907	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccttctccaactgcagcCacagcagaaatgacatgtgt	8	13	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60885907	T	T	60885907	3	4	129	1	0	0	0	0	1	0	0	0	3051	594	21	4	365	4	CD5	11	60885907	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	684577	60885907	74120609	599	116521											
SYT7	9066	broad.mit.edu	37	chr11	61291201	61291201	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggggtgtggcgggttggggTgaggaccactgcagaccctg	20	9	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61291201	G	G	61291201	1	3	129	0	1	0	0	0	0	0	0	0	15598	1711	59	5		5	SYT7	11	61291201	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	405294	61291201	73715315	600	116522											
INTS5	80789	broad.mit.edu	37	chr11	62414465	62414465	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctctctcactgctcaaccTccctgggcttccagagcaag	7	18	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62414465	A	A	62414465	1	1	129	0	1	0	0	0	0	0	0	0	7851	1566	54	5		5	INTS5	11	62414465	3'UTR	SNP	T	TCGA-44-6777-01A-11D-1855-08	1123264	62414465	72592051	601	116523											
C11orf48	79081	broad.mit.edu	37	chr11	62435066	62435066	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacaaacacgggagcctgttGagtcccagaagggacagtgg	14	9	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62435066	C	C	62435066	4	2	129	1	0	0	0	0	0	1	0	0	1656	1294	45	4	340	4	C11orf48	11	62435066	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	20601	62435066	72571450	602	116524											
NXF1	10482	broad.mit.edu	37	chr11	62572866	62572866	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgggctcaggcgctggcCgctacgccggcaaacaacct	15	15	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62572866	A	A	62572866	1	1	129	0	1	0	0	0	0	0	0	0	10877	667	23	1		1	NXF1	11	62572866	5'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	137800	62572866	72433650	603	116525											
SLC22A8	9376	broad.mit.edu	37	chr11	62782143	62782143	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgtagacccagccatcCaggcatggctccatggccct	10	15	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62782143	G	G	62782143	2	3	129	1	0	0	0	0	0	0	0	1	14574	581	21	4		4	SLC22A8	11	62782143	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	209277	62782143	72224373	604	116526											
PLCB3	5331	broad.mit.edu	37	chr11	64033751	64033751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagagtctgtgcttctgcCgctgacccctcctcttcccc	9	18	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64033751	A	A	64033751	1	1	129	0	1	0	0	0	0	0	0	0	12124	667	23	1		1	PLCB3	11	64033751	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1251608	64033751	70972765	605	116527											
NRXN2	9379	broad.mit.edu	37	chr11	64428202	64428202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggatagggagcagggacaCctaggatgaagaccagcctc	15	9	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64428202	A	A	64428202	1	1	129	0	1	0	0	0	0	0	0	0	10761	522	18	3		3	NRXN2	11	64428202	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	394451	64428202	70578314	606	116528											
EFEMP2	30008	broad.mit.edu	37	chr11	65637376	65637376	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcatagccctggtggcagcGacacaggaaggtcccatagg	13	12	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65637376	A	A	65637376	3	1	129	1	0	0	0	0	1	0	0	0	4982	1058	37	4	672	4	EFEMP2	11	65637376	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1209174	65637376	69369140	607	116529											
SYT12	91683	broad.mit.edu	37	chr11	66811071	66811071	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctccctgctgtggcctctCaggcccctagcgccctccat	9	19	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66811071	G	G	66811071	1	3	129	0	1	0	0	0	0	0	0	0	15587	841	29	4		4	SYT12	11	66811071	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1173695	66811071	68195445	608	116530											
KDM2A	22992	broad.mit.edu	37	chr11	66999631	66999631	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttttgaaaatactaacAtttatgtgttcattgaagac	6	6	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66999631	G	G	66999631	1	3	129	0	1	0	0	0	0	0	0	0	8194	232	8	5		5	KDM2A	11	66999631	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	188560	66999631	68006885	609	116531											
KDM2A	22992	broad.mit.edu	37	chr11	67013643	67013643	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatggagtgagtgacacaAcagaatgggacacttgtgat	12	6	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67013643	G	G	67013643	1	3	129	0	1	0	0	0	0	0	0	0	8194	58	2	5		5	KDM2A	11	67013643	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	14012	67013643	67992873	610	116532											
AIP	9049	broad.mit.edu	37	chr11	67250704	67250704	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggaaggccgaggagagctCccggactttcaagatgggac	15	10	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67250704	T	T	67250704	2	4	129	1	0	0	0	0	0	0	0	1	435	842	30	4		4	AIP	11	67250704	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	237061	67250704	67755812	611	116533											
CDK2AP2	10263	broad.mit.edu	37	chr11	67274736	67274736	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggtagtaatactggacatCctctaggcttggctcaggtg	12	9	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67274736	T	T	67274736	1	4	129	0	1	0	0	0	0	0	0	0	3169	870	30	4		4	CDK2AP2	11	67274736	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	24032	67274736	67731780	612	116534											
FOLR3	2352	broad.mit.edu	37	chr11	71850699	71850699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttccccactccagccgccCtttgtgaaggcctctggagc	9	17	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71850699	A	A	71850699	3	1	129	1	0	0	0	0	1	0	0	0	6041	681	24	2	574	2	FOLR3	11	71850699	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4575963	71850699	63155817	613	116535											
ARHGEF17	9828	broad.mit.edu	37	chr11	73077012	73077012	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggtcagtgcatcatacCccaagctagggatcatggac	13	10	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73077012	T	T	73077012	1	4	129	0	1	0	0	0	0	0	0	0	902	638	22	4		4	ARHGEF17	11	73077012	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1226313	73077012	61929504	614	116536											
MAP6	4135	broad.mit.edu	37	chr11	75298416	75298416	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgattcttcacggactcGgggaccacaggaccttgatt	10	11	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75298416	T	T	75298416	2	4	129	1	0	0	0	0	0	0	0	1	9356	1103	39	1		1	MAP6	11	75298416	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	2221404	75298416	59708100	615	116537											
ANKRD42	338699	broad.mit.edu	37	chr11	82917011	82917011	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatctctcattcactacagtCtgctattttatgataacaga	5	9	4	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82917011	G	G	82917011	1	3	129	0	1	0	0	0	0	0	0	0	670	928	32	4		4	ANKRD42	11	82917011	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	7618595	82917011	52089505	616	116538											
TMEM126B	55863	broad.mit.edu	37	chr11	85345207	85345207	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attctcaaacttcctgttcaGacgctgcttcaaggttaaac	6	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85345207	C	C	85345207	3	2	129	1	0	0	0	0	1	0	0	0	16162	942	33	4	197	4	TMEM126B	11	85345207	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2428196	85345207	49661309	617	116539											
SYTL2	54843	broad.mit.edu	37	chr11	85436161	85436161	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatggtgatatcactcctgGaggatttagggggctacata	12	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85436161	A	A	85436161	1	1	129	0	1	0	0	0	0	0	0	0	15602	1174	41	4		4	SYTL2	11	85436161	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	90954	85436161	49570355	618	116540											
SYTL2	54843	broad.mit.edu	37	chr11	85468707	85468707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcttcagagcagcatccCgctgcaaaaccttcatgatg	7	15	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85468707	A	A	85468707	3	1	129	1	0	0	0	0	1	0	0	0	15602	652	23	1	5298	1	SYTL2	11	85468707	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	32546	85468707	49537809	619	116541											
CCDC83	220047	broad.mit.edu	37	chr11	85593661	85593661	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtaacaagagaggatgttGaagaagcgatgaaggaaaaa	13	2	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85593661	A	A	85593661	3	1	129	1	0	0	0	0	1	0	0	0	2885	1291	45	4	296	4	CCDC83	11	85593661	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	124954	85593661	49412855	620	116542											
FOLH1B	219595	broad.mit.edu	37	chr11	89424367	89424367	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtatggttctattaatctCctaaatataatggactatct	5	7	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89424367	A	A	89424367	1	1	129	0	1	0	0	0	0	0	0	0	6038	870	30	3		3	FOLH1B	11	89424367	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3830706	89424367	45582149	621	116543											
FAT3	120114	broad.mit.edu	37	chr11	92613928	92613928	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtctctcacagtttacGgggagaaactgtgaatctga	10	9	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92613928	T	T	92613928	2	4	129	1	0	0	0	0	0	0	0	1	5748	1103	39	1		1	FAT3	11	92613928	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	3189561	92613928	42392588	622	116544											
MMP12	4321	broad.mit.edu	37	chr11	102742618	102742618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaacattactccatacttGgaaagctttccggattgcgt	9	9	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102742618	T	T	102742618	3	4	129	1	0	0	0	0	1	0	0	0	9744	1357	47	2	1028	2	MMP12	11	102742618	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	10128690	102742618	32263898	623	116545											
MMP13	4322	broad.mit.edu	37	chr11	102824901	102824901	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacctttggaactacttgtCcaggtttcatcatcatcaaa	5	10	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102824901	T	T	102824901	4	4	129	1	0	0	0	0	0	1	0	0	9745	856	30	4	822	4	MMP13	11	102824901	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	82283	102824901	32181615	624	116546											
RAB39	54734	broad.mit.edu	37	chr11	107832852	107832852	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttagcttcacaacgtcaAgttacaagggaagaagctga	10	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107832852	T	T	107832852	3	4	129	1	0	0	0	0	1	0	0	0	13037	69	3	5	414	5	RAB39	11	107832852	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	5007951	107832852	27173664	625	116547											
PTS	5805	broad.mit.edu	37	chr11	112138328	112138328	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggctctctcttgctcttctCgagccttcttaactctttct	6	14	7	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112138328	G	G	112138328	1	3	129	0	1	0	0	0	0	0	0	0	12926	899	31	4		4	PTS	11	112138328	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	4305476	112138328	22868188	626	116548											
CD3G	917	broad.mit.edu	37	chr11	118222510	118222510	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaacagcataccagatgaTgagatcagtttgggtagaat	11	6	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118222510	A	A	118222510	1	1	129	0	1	0	0	0	0	0	0	0	3043	1479	51	5		5	CD3G	11	118222510	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	6084182	118222510	16784006	627	116549											
IFT46	56912	broad.mit.edu	37	chr11	118430510	118430512	+	In_Frame_Del	DEL	TCC	-	-													tttactgtaccttgttatttTcctcttcacactcatcactg							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118430512	-	-	118430510	7	5	129	1	0	1	0	1	0	0	0	0	7630	1783	62	0	1076	0	IFT46	11	118430510	In_Frame_Del	DEL	TCC	TCGA-44-6777-01A-11D-1855-08	208000	118430510	16576006	628	116550											
TREH	11181	broad.mit.edu	37	chr11	118532290	118532290	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcaatccagctgcatgccCgtggcacacctgcctctcct	9	17	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118532290	T	T	118532290	1	4	129	0	1	0	0	0	0	0	0	0	16593	667	23	4		4	TREH	11	118532290	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	101780	118532290	16474226	629	116551											
BCL9L	283149	broad.mit.edu	37	chr11	118779239	118779239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagattgggccccgccattcCctgtcttgccatgattggtc	11	13	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118779239	A	A	118779239	3	1	129	1	0	0	0	0	1	0	0	0	1387	623	22	2	4375	2	BCL9L	11	118779239	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	246949	118779239	16227277	630	116552											
MCAM	4162	broad.mit.edu	37	chr11	119183624	119183624	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaggtgtacaaaccacTcgactccacagtctgggacg	10	13	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119183624	A	A	119183624	3	1	129	1	0	0	0	0	1	0	0	0	9461	1551	54	5	1389	5	MCAM	11	119183624	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	404385	119183624	15822892	631	116553											
GRIK4	2900	broad.mit.edu	37	chr11	120531066	120531066	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggtgctgcttcctgcGtggctcgtgatggtcgcctg	14	12	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120531066	T	T	120531066	2	4	129	1	0	0	0	0	0	0	0	1	6842	1132	40	3		3	GRIK4	11	120531066	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1347442	120531066	14475450	632	116554											
GRAMD1B	57476	broad.mit.edu	37	chr11	123468506	123468506	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcaaacctgcattctgccAgcctgccttgtttctacaag	6	14	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123468506	T	T	123468506	1	4	129	0	1	0	0	0	0	0	0	0	6814	203	7	5		5	GRAMD1B	11	123468506	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	2937440	123468506	11538010	633	116555											
SRPR	6734	broad.mit.edu	37	chr11	126134327	126134327	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctacaaacagcaccaaatCaggtgtattgacagtaatga	7	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126134327	T	T	126134327	3	4	129	1	0	0	0	0	1	0	0	0	15280	826	29	4	295	4	SRPR	11	126134327	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2665821	126134327	8872189	634	116556											
IQSEC3	440073	broad.mit.edu	37	chr12	176538	176538	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagttgctgcgctgctgccGgagccctccttcagcacaaa	11	15	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176538	A	A	176538	1	1	129	0	1	0	0	0	0	0	0	0	7889	1117	39	4		4	IQSEC3	12	176538	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08		176538	133675357	635	116557											
CACNA2D4	93589	broad.mit.edu	37	chr12	1965188	1965188	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcactcacactccaggtcTgggtccttcctggtgaggaa	11	13	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1965188	A	A	1965188	2	1	129	1	0	0	0	0	0	0	0	1	2577	1567	55	5		5	CACNA2D4	12	1965188	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	1788650	1965188	131886707	636	116558											
ACRBP	84519	broad.mit.edu	37	chr12	6749349	6749349	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtccatgtggagcccaccGtacaaatccagcccgtaaaa	8	13	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6749349	A	A	6749349	2	1	129	1	0	0	0	0	0	0	0	1	170	1140	40	4		4	ACRBP	12	6749349	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	4784161	6749349	127102546	637	116559											
LAG3	3902	broad.mit.edu	37	chr12	6884556	6884556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcactgccaagtggactcCtcctgggggaggccctgacc	12	16	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6884556	A	A	6884556	3	1	129	1	0	0	0	0	1	0	0	0	8672	681	24	2	917	2	LAG3	12	6884556	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	135207	6884556	126967339	638	116560											
C3AR1	719	broad.mit.edu	37	chr12	8212740	8212740	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctcattccatggctgtgaGagtaggtcagttgaattggt	14	6	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8212740	T	T	8212740	2	4	129	1	0	0	0	0	0	0	0	1	2227	929	33	3		3	C3AR1	12	8212740	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1328184	8212740	125639155	639	116561											
A2ML1	144568	broad.mit.edu	37	chr12	8991101	8991101	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaagaaaaagggctggtcCcagggacagatttactccaa	11	8	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8991101	G	G	8991101	1	3	129	0	1	0	0	0	0	0	0	0	5	638	22	4		4	A2ML1	12	8991101	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	778361	8991101	124860794	640	116562											
PZP	5858	broad.mit.edu	37	chr12	9316942	9316942	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggccaagtgtgagatgctGcagtaaattgggatttgtaa	15	4	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9316942	C	C	9316942	1	2	129	0	1	0	0	0	0	0	0	0	12977	1334	46	4		4	PZP	12	9316942	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	325841	9316942	124534953	641	116563											
TAS2R19	259294	broad.mit.edu	37	chr12	11174720	11174720	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcttttgtccacactctctCatccatggttatcacagcaa	4	13	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11174720	T	T	11174720	3	4	129	1	0	0	0	0	1	0	0	0	15689	835	29	4	451	4	TAS2R19	12	11174720	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1857778	11174720	122677175	642	116564											
PRB2	653247	broad.mit.edu	37	chr12	11545943	11545943	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagatcgggcacttcGggacttgctgcctccttgtg	15	10	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11545943	T	T	11545943	2	4	129	1	0	0	0	0	0	0	0	1	12549	1124	39	1		1	PRB2	12	11545943	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	371223	11545943	122305952	643	116565											
GRIN2B	2904	broad.mit.edu	37	chr12	13906333	13906333	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagggatgaagctgtgctCagacagcatgtcagaagcag	13	9	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13906333	G	G	13906333	3	3	129	1	0	0	0	0	1	0	0	0	6846	835	29	4	3570	4	GRIN2B	12	13906333	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2360390	13906333	119945562	644	116566											
PIK3C2G	5288	broad.mit.edu	37	chr12	18691060	18691060	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaaaccatttctcttccttCgaatgattgctactgttttt	4	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18691060	T	T	18691060	1	4	129	0	1	0	0	0	0	0	0	0	12006	899	31	4		4	PIK3C2G	12	18691060	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	4784727	18691060	115160835	645	116567											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	129	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6707225	25398285	108453610	646	116568											
ITPR2	3709	broad.mit.edu	37	chr12	26774132	26774132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgctgctcttctccaccCatagctcagacttttctact	5	14	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26774132	A	A	26774132	3	1	129	1	0	0	0	0	1	0	0	0	7991	595	21	2	4847	2	ITPR2	12	26774132	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1375847	26774132	107077763	647	116569											
OVCH1	341350	broad.mit.edu	37	chr12	29597298	29597298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagatcaaggtaaacaGctctcttccctaattgtcct	5	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29597298	T	T	29597298	1	4	129	0	1	0	0	0	0	0	0	0	11417	986	34	3		3	OVCH1	12	29597298	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2823166	29597298	104254597	648	116570											
IPO8	10526	broad.mit.edu	37	chr12	30789973	30789973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcccggtttaccagttGtctagtagcacagacctgct	8	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30789973	T	T	30789973	3	4	129	1	0	0	0	0	1	0	0	0	7868	1386	48	3	491	3	IPO8	12	30789973	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1192675	30789973	103061922	649	116571											
ALG10	84920	broad.mit.edu	37	chr12	34175705	34175705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatttctccctttcccaGgtggggtccccaacctgtcc	9	17	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34175705	T	T	34175705	3	4	129	1	0	0	0	0	1	0	0	0	511	1014	35	2	173	2	ALG10	12	34175705	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3385732	34175705	99676190	650	116572											
DBX2	440097	broad.mit.edu	37	chr12	45417664	45417664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtgtcaggagaggcagCatgctctcttctcctagagt	11	11	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45417664	A	A	45417664	3	1	129	1	0	0	0	0	1	0	0	0	4293	710	25	3	514	3	DBX2	12	45417664	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	11241959	45417664	88434231	651	116573											
COL2A1	1280	broad.mit.edu	37	chr12	48388310	48388310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctcagagacgcagtagcaTagtgggggcaccccagaggg	15	11	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48388310	A	A	48388310	1	1	129	0	1	0	0	0	0	0	0	0	3719	1421	49	5		5	COL2A1	12	48388310	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	2970646	48388310	85463585	652	116574											
OR8S1	341568	broad.mit.edu	37	chr12	48920324	48920324	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagctctgaaaagaactttgGaaaaatatttgcaatatacc	6	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48920324	T	T	48920324	1	4	129	0	1	0	0	0	0	0	0	0	11340	1189	41	3		3	OR8S1	12	48920324	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	532014	48920324	84931571	653	116575											
MLL2	8085	broad.mit.edu	37	chr12	49438782	49438782	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagtatgtgatccctggaTggaagccccagggaaaccag	13	9	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49438782	A	A	49438782	1	1	129	0	1	0	0	0	0	0	0	0	9714	1479	51	5		5	MLL2	12	49438782	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	518458	49438782	84413113	654	116576											
DIP2B	57609	broad.mit.edu	37	chr12	51108375	51108375	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagccccggcaaaaacaAccaggtaatatgctggcttc	8	13	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51108375	G	G	51108375	2	3	129	1	0	0	0	0	0	0	0	1	4568	40	2	5		5	DIP2B	12	51108375	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	1669593	51108375	82743520	655	116577											
CSRNP2	81566	broad.mit.edu	37	chr12	51470324	51470324	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacttcctcttgagaccCgagcccgtgaatgcatccat	7	14	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51470324	A	A	51470324	2	1	129	1	0	0	0	0	0	0	0	1	3998	639	23	1		1	CSRNP2	12	51470324	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	361949	51470324	82381571	656	116578											
BIN2	51411	broad.mit.edu	37	chr12	51717786	51717786	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccctgtgggccagacagacAgcgaggcccggccacctacc	12	17	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51717786	T	T	51717786	1	4	129	0	1	0	0	0	0	0	0	0	1439	203	7	5		5	BIN2	12	51717786	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	247462	51717786	82134109	657	116579											
SLC4A8	9498	broad.mit.edu	37	chr12	51864385	51864385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaaatgtcagggttctaCtcagtacagacaggcaatat	9	7	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51864385	A	A	51864385	1	1	129	0	1	0	0	0	0	0	0	0	14773	580	20	3		3	SLC4A8	12	51864385	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	146599	51864385	81987510	658	116580											
KRT84	3890	broad.mit.edu	37	chr12	52774887	52774887	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccttggcgtgctcaatctCtgccttaagcctctggatca	9	13	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52774887	G	G	52774887	3	3	129	1	0	0	0	0	1	0	0	0	8569	922	32	4	638	4	KRT84	12	52774887	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	910502	52774887	81077008	659	116581											
KRT3	3850	broad.mit.edu	37	chr12	53189644	53189644	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggagatgctcttgttgccGcccaggttgtagaggctgcg	15	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53189644	C	C	53189644	2	2	129	1	0	0	0	0	0	0	0	1	8537	1074	38	4		4	KRT3	12	53189644	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	414757	53189644	80662251	660	116582											
KRT4	3851	broad.mit.edu	37	chr12	53201958	53201958	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgccttgcacaaagagctaTgaattcccagcaacaagctc	7	12	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53201958	C	C	53201958	1	2	129	0	1	0	0	0	0	0	0	0	8548	1479	51	5		5	KRT4	12	53201958	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	12314	53201958	80649937	661	116583											
TENC1	23371	broad.mit.edu	37	chr12	53442938	53442938	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggaggcccatggatggggGtggagtatgtgttgggaggg	22	5	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53442938	C	C	53442938	1	2	129	0	1	0	0	0	0	0	0	0	15880	1261	44	4		4	TENC1	12	53442938	5'Flank	SNP	G	TCGA-44-6777-01A-11D-1855-08	240980	53442938	80408957	662	116584											
ERBB3	2065	broad.mit.edu	37	chr12	56488991	56488991	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatgttaggctgttgaaattGagcctctgctgtccaagctc	10	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56488991	A	A	56488991	1	1	129	0	1	0	0	0	0	0	0	0	5250	1305	45	4		4	ERBB3	12	56488991	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3046053	56488991	77362904	663	116585											
SLC39A5	283375	broad.mit.edu	37	chr12	56630712	56630712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttccgaccctgctggcccCaggtgctgccttctctgatg	10	16	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56630712	A	A	56630712	1	1	129	0	1	0	0	0	0	0	0	0	14735	609	21	2		2	SLC39A5	12	56630712	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	141721	56630712	77221183	664	116586											
NXPH4	11247	broad.mit.edu	37	chr12	57619578	57619578	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgccaaatcccagcctcaCtaggtgggacccccttccca	7	20	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57619578	G	G	57619578	1	3	129	0	1	0	0	0	0	0	0	0	10888	580	20	4		4	NXPH4	12	57619578	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	988866	57619578	76232317	665	116587											
KIF5A	3798	broad.mit.edu	37	chr12	57963980	57963980	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggcactgaggcacgccAggtgggatgagaggtagacg	19	8	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57963980	C	C	57963980	1	2	129	0	1	0	0	0	0	0	0	0	8375	203	7	5		5	KIF5A	12	57963980	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	344402	57963980	75887915	666	116588											
MSRB3	253827	broad.mit.edu	37	chr12	65702399	65702399	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcatttggtgacaaagagcCagccagtagcccttcgagcc	11	12	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65702399	G	G	65702399	1	3	129	0	1	0	0	0	0	0	0	0	9983	595	21	4		4	MSRB3	12	65702399	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	7738419	65702399	68149496	667	116589											
NUP107	57122	broad.mit.edu	37	chr12	69084516	69084516	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcagggttctttggaaAtctctccatggtatgtagaa	10	7	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69084516	T	T	69084516	3	4	129	1	0	0	0	0	1	0	0	0	10848	101	4	5	307	5	NUP107	12	69084516	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	3382117	69084516	64767379	668	116590											
CCT2	10576	broad.mit.edu	37	chr12	69991418	69991418	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgtcttttaattttagGtgaggcttgtaccattgttt	9	5	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69991418	T	T	69991418	3	4	129	1	0	0	0	0	1	0	0	0	2983	1275	44	3	1149	3	CCT2	12	69991418	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	906902	69991418	63860477	669	116591											
GLIPR1L2	144321	broad.mit.edu	37	chr12	75807464	75807464	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacatgcagcaattttcatAtgcaactatgcgccagggta	8	9	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75807464	T	T	75807464	2	4	129	1	0	0	0	0	0	0	0	1	6507	439	16	5		5	GLIPR1L2	12	75807464	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	5816046	75807464	58044431	670	116592											
ACSS3	79611	broad.mit.edu	37	chr12	81536858	81536858	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttaatctccttattacagTacatattcttatatttttgc	2	7	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81536858	C	C	81536858	1	2	129	0	1	0	0	0	0	0	0	0	190	1653	57	5		5	ACSS3	12	81536858	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	5729394	81536858	52315037	671	116593											
DCN	1634	broad.mit.edu	37	chr12	91546752	91546752	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtttgagattatagaaacAacaacagcagtgaaatgtag	9	4	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91546752	G	G	91546752	1	3	129	0	1	0	0	0	0	0	0	0	4330	145	5	5		5	DCN	12	91546752	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	10009894	91546752	42305143	672	116594											
APAF1	317	broad.mit.edu	37	chr12	99065268	99065268	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatggaaaaatgtcagaTcgtggctctgattgtgtttc	11	5	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99065268	G	G	99065268	1	3	129	0	1	0	0	0	0	0	0	0	757	1450	50	5		5	APAF1	12	99065268	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	7518516	99065268	34786627	673	116595											
ANKS1B	56899	broad.mit.edu	37	chr12	99145221	99145221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgtggaggagtgtcccCcttttcttgcttgtagtgct	13	8	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99145221	A	A	99145221	3	1	129	1	0	0	0	0	1	0	0	0	689	623	22	2	285	2	ANKS1B	12	99145221	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	79953	99145221	34706674	674	116596											
ANKS1B	56899	broad.mit.edu	37	chr12	100200327	100200327	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatgatcatttttaccactCtaagccgtccgtagagtgcc	8	11	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100200327	T	T	100200327	3	4	129	1	0	0	0	0	1	0	0	0	689	913	32	4	3602	4	ANKS1B	12	100200327	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1055106	100200327	33651568	675	116597											
ANKS1B	56899	broad.mit.edu	37	chr12	100205877	100205877	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatcacattttcaatatggCtttgccttgtaaaactagaa	5	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100205877	T	T	100205877	1	4	129	0	1	0	0	0	0	0	0	0	689	812	28	4		4	ANKS1B	12	100205877	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	5550	100205877	33646018	676	116598											
GOLGA2B	55592	broad.mit.edu	37	chr12	100559806	100559806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttacgtgctattccaaCtgcagtgcactggtgatctc	8	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100559806	A	A	100559806	1	1	129	0	1	0	0	0	0	0	0	0	6617	580	20	3		3	GOLGA2B	12	100559806	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	353929	100559806	33292089	677	116599											
GNPTAB	79158	broad.mit.edu	37	chr12	102153964	102153964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgttatgcgcattgtaaGtaatgactgtggttttaaaa	9	4	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102153964	T	T	102153964	1	4	129	0	1	0	0	0	0	0	0	0	6609	1044	36	3		3	GNPTAB	12	102153964	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1594158	102153964	31697931	678	116600											
NUAK1	9891	broad.mit.edu	37	chr12	106461516	106461516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgggtttggccaggccCttcattttggcttcggtgtc	14	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106461516	A	A	106461516	3	1	129	1	0	0	0	0	1	0	0	0	10807	680	24	2	939	2	NUAK1	12	106461516	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4307552	106461516	27390379	679	116601											
ACACB	32	broad.mit.edu	37	chr12	109613836	109613836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgaaagacgtagatgaGggcttggaggtaaatgcaga	16	4	0	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109613836	T	T	109613836	3	4	129	1	0	0	0	0	1	0	0	0	107	991	35	2	1343	2	ACACB	12	109613836	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	3152320	109613836	24238059	680	116602											
MYO1H	283446	broad.mit.edu	37	chr12	109843787	109843787	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acattggttttgaagaagacGaccaaggctgtgccactatc	10	9	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109843787	A	A	109843787	3	1	129	1	0	0	0	0	1	0	0	0	10169	1058	37	4	888	4	MYO1H	12	109843787	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	229951	109843787	24008108	681	116603											
TRPV4	59341	broad.mit.edu	37	chr12	110232363	110232363	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaggcaggctgcctcgggTgtgccttcccccaccctcca	10	19	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110232363	A	A	110232363	1	1	129	0	1	0	0	0	0	0	0	0	16723	1711	59	5		5	TRPV4	12	110232363	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	388576	110232363	23619532	682	116604											
SDSL	113675	broad.mit.edu	37	chr12	113873251	113873251	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggtggctggcctgctGgaggtgggctggcagcatgt	22	7	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113873251	C	C	113873251	2	2	129	1	0	0	0	0	0	0	0	1	14089	1335	47	4		4	SDSL	12	113873251	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	3640888	113873251	19978644	683	116605											
RBM19	9904	broad.mit.edu	37	chr12	114374889	114374889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttctgtggggctgtgCtggagaagacgccaactgga	14	8	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114374889	A	A	114374889	3	1	129	1	0	0	0	0	1	0	0	0	13229	797	28	3	927	3	RBM19	12	114374889	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	501638	114374889	19477006	684	116606											
NOS1	4842	broad.mit.edu	37	chr12	117701880	117701880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacttgtgactgcctgacCctcggcctctgaagggaaga	14	11	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117701880	A	A	117701880	1	1	129	0	1	0	0	0	0	0	0	0	10636	638	22	2		2	NOS1	12	117701880	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3326991	117701880	16150015	685	116607											
WDR66	144406	broad.mit.edu	37	chr12	122396790	122396790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaaagcctggcacagaCtcaacatctcttgaatgaat	7	10	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122396790	A	A	122396790	1	1	129	0	1	0	0	0	0	0	0	0	17444	580	20	3		3	WDR66	12	122396790	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	4694910	122396790	11455105	686	116608											
VPS33A	65082	broad.mit.edu	37	chr12	122723069	122723069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagccactgtgcccggccCatgaagtattttttaaaaag	9	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122723069	A	A	122723069	1	1	129	0	1	0	0	0	0	0	0	0	17328	609	21	2		2	VPS33A	12	122723069	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	326279	122723069	11128826	687	116609											
HIP1R	9026	broad.mit.edu	37	chr12	123343000	123343000	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtgagtgtagccagggcAgggcggaggcgggggctgtg	23	7	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123343000	T	T	123343000	1	4	129	0	1	0	0	0	0	0	0	0	7182	203	7	5		5	HIP1R	12	123343000	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	619931	123343000	10508895	688	116610											
DNAH10	196385	broad.mit.edu	37	chr12	124323158	124323158	+	Frame_Shift_Del	DEL	C	-	-													agaaatgctttcccaaggttCttcttcatttctgacgatga							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124323158	-	-	124323158	7	5	129	1	0	1	0	1	0	0	0	0	4638	912	32	0	4814	0	DNAH10	12	124323158	Frame_Shift_Del	DEL	C	TCGA-44-6777-01A-11D-1855-08	980158	124323158	9528737	689	116611											
UBC	7316	broad.mit.edu	37	chr12	125397469	125397469	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatgttgtagtcagacagGgtgcgcccatcttccagctg	13	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125397469	A	A	125397469	2	1	129	1	0	0	0	0	0	0	0	1	16968	1219	43	4		4	UBC	12	125397469	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1074311	125397469	8454426	690	116612											
AACS	65985	broad.mit.edu	37	chr12	125576036	125576036	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcggcaagcattggtgccatCtggagctccacgtccccgga	13	14	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125576036	G	G	125576036	3	3	129	1	0	0	0	0	1	0	0	0	9	903	32	4	555	4	AACS	12	125576036	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	178567	125576036	8275859	691	116613											
TMEM132B	114795	broad.mit.edu	37	chr12	126068669	126068669	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggccagaatgacctcaCgaaggaggaaacagctgacc	13	10	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126068669	T	T	126068669	1	4	129	0	1	0	0	0	0	0	0	0	16169	551	19	4		4	TMEM132B	12	126068669	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	492633	126068669	7783226	692	116614											
POLE	5426	broad.mit.edu	37	chr12	133209096	133209096	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagagaaggtgatcattccTggaagtataaggatgctgag	14	4	1	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133209096	A	A	133209096	5	1	129	1	0	0	0	0	0	0	1	0	12291	1594	55	5	745	5	POLE	12	133209096	Splice_Site	SNP	T	TCGA-44-6777-01A-11D-1855-08	7140427	133209096	642799	693	116615											
TPTE2	93492	broad.mit.edu	37	chr13	20024537	20024537	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagggaataacatgataaatGatgaagttatgaataagtta	9	1	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20024537	C	C	20024537	1	2	129	0	1	0	0	0	0	0	0	0	16555	1305	45	4		4	TPTE2	13	20024537	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08		20024537	95145341	694	116616											
PSPC1	55269	broad.mit.edu	37	chr13	20356404	20356404	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagaggaatcgatgaggccGagcggcgccacggttgccac	15	12	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20356404	A	A	20356404	1	1	129	0	1	0	0	0	0	0	0	0	12822	1073	37	4		4	PSPC1	13	20356404	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	331867	20356404	94813474	695	116617											
SPATA13	221178	broad.mit.edu	37	chr13	24697412	24697412	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccactttcacaggcatttctCtatcatcaatcagacatctt	3	13	6	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24697412	G	G	24697412	1	3	129	0	1	0	0	0	0	0	0	0	15116	928	32	4		4	SPATA13	13	24697412	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	4341008	24697412	90472466	696	116618											
RNF17	56163	broad.mit.edu	37	chr13	25367307	25367307	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgacatgtctgtcctaaccAgtgaagcaccaccacctcct	6	15	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25367307	G	G	25367307	3	3	129	1	0	0	0	0	1	0	0	0	13572	188	7	5	1101	5	RNF17	13	25367307	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	669895	25367307	89802571	697	116619											
LNX2	222484	broad.mit.edu	37	chr13	28130363	28130363	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggtaaaatttttcaagatCccatcttacctctctttatt	4	9	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28130363	A	A	28130363	1	1	129	0	1	0	0	0	0	0	0	0	8940	870	30	3		3	LNX2	13	28130363	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2763056	28130363	87039515	698	116620											
ALOX5AP	241	broad.mit.edu	37	chr13	31309834	31309834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggaaagcccttcactcaGggaagaacagaaggggagat	13	7	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31309834	T	T	31309834	1	4	129	0	1	0	0	0	0	0	0	0	541	1015	35	2		2	ALOX5AP	13	31309834	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3179471	31309834	83860044	699	116621											
TRPC4	7223	broad.mit.edu	37	chr13	38225610	38225610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggtcctgaacaggagaaCatgacaactgatgataggtt	11	7	0	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38225610	A	A	38225610	1	1	129	0	1	0	0	0	0	0	0	0	16705	493	17	3		3	TRPC4	13	38225610	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	6915776	38225610	76944268	700	116622											
FREM2	341640	broad.mit.edu	37	chr13	39263541	39263541	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctaatcagtccgggctacAgcggtttgtgattcgtatcc	10	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39263541	G	G	39263541	3	3	129	1	0	0	0	0	1	0	0	0	6105	188	7	5	2062	5	FREM2	13	39263541	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1037931	39263541	75906337	701	116623											
DGKH	160851	broad.mit.edu	37	chr13	42772547	42772547	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatatttgatatcaggcctgGatggactggttctttctgtg	12	6	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42772547	C	C	42772547	1	2	129	0	1	0	0	0	0	0	0	0	4510	1189	41	4		4	DGKH	13	42772547	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3509006	42772547	72397331	702	116624											
ITM2B	9445	broad.mit.edu	37	chr13	48828025	48828025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactagcatttatgcttgcaGgtgttattctaggaggagca	12	6	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48828025	T	T	48828025	3	4	129	1	0	0	0	0	1	0	0	0	7983	1000	35	2	205	2	ITM2B	13	48828025	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	6055478	48828025	66341853	703	116625											
C13orf34	79866	broad.mit.edu	37	chr13	73319246	73319246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttaccttcggcttctccCggaagtcctcacagtggtgt	9	14	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73319246	A	A	73319246	2	1	129	1	0	0	0	0	0	0	0	1	1741	639	23	1		1	C13orf34	13	73319246	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	24491221	73319246	41850632	704	116626											
UBAC2	337867	broad.mit.edu	37	chr13	100008238	100008238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaaacctgtctctcttGggtttgcagctgctgttgaa	12	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100008238	T	T	100008238	1	4	129	0	1	0	0	0	0	0	0	0	16961	1363	47	2		2	UBAC2	13	100008238	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	26688992	100008238	15161640	705	116627											
NALCN	259232	broad.mit.edu	37	chr13	102029296	102029296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtaattctggtccttgGcagttcaaatcggaaataaa	8	6	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102029296	T	T	102029296	3	4	129	1	0	0	0	0	1	0	0	0	10242	1203	42	3	4889	3	NALCN	13	102029296	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2021058	102029296	13140582	706	116628											
LIG4	3981	broad.mit.edu	37	chr13	108862190	108862190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgagacatcattccacccCgtgatcctttaccccaatat	4	14	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108862190	A	A	108862190	3	1	129	1	0	0	0	0	1	0	0	0	8855	652	23	1	1312	1	LIG4	13	108862190	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6832894	108862190	6307688	707	116629											
OR4L1	122742	broad.mit.edu	37	chr14	20528948	20528948	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccacatcattgtggtcactCtgttctttggaccttgtatt	7	11	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20528948	G	G	20528948	3	3	129	1	0	0	0	0	1	0	0	0	11168	912	32	4	747	4	OR4L1	14	20528948	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08		20528948	86820592	708	116630											
CHD8	57680	broad.mit.edu	37	chr14	21860376	21860376	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggtaaaactccctacctGgtgtctccgtattagcatgg	10	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21860376	A	A	21860376	1	1	129	0	1	0	0	0	0	0	0	0	3362	1363	47	4		4	CHD8	14	21860376	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1331428	21860376	85489164	709	116631											
CHD8	57680	broad.mit.edu	37	chr14	21860803	21860803	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acttcgtggtgtggggactgGagagtcaccatattctccag	13	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21860803	C	C	21860803	3	2	129	1	0	0	0	0	1	0	0	0	3362	1174	41	4	1131	4	CHD8	14	21860803	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	427	21860803	85488737	710	116632											
CHD8	57680	broad.mit.edu	37	chr14	21863152	21863152	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgccggtccccacgttctGcagcctctatcttcatttgt	7	15	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21863152	A	A	21863152	3	1	129	1	0	0	0	0	1	0	0	0	3362	1319	46	4	2472	4	CHD8	14	21863152	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2349	21863152	85486388	711	116633											
SLC7A7	9056	broad.mit.edu	37	chr14	23282099	23282099	+	Intron	DEL	C	-	-													cccaccacctcctaccccagCcccacttacaaatgcaggca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23282099	-	-	23282099	6	5	129	0	1	1	0	1	0	0	0	0	14817	754	26	0		0	SLC7A7	14	23282099	Intron	DEL	C	TCGA-44-6777-01A-11D-1855-08	1418947	23282099	84067441	712	116634											
MYH7	4625	broad.mit.edu	37	chr14	23886040	23886040	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaccaaaagcctggagctCagctccctgcaccccgtgcc	11	17	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23886040	A	A	23886040	1	1	129	0	1	0	0	0	0	0	0	0	10133	841	29	3		3	MYH7	14	23886040	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	603941	23886040	83463500	713	116635											
MYH7	4625	broad.mit.edu	37	chr14	23893993	23893993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccgcctgcacttggagCtgcaggtcattcttctcctg	9	15	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23893993	A	A	23893993	3	1	129	1	0	0	0	0	1	0	0	0	10133	796	28	3	3219	3	MYH7	14	23893993	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	7953	23893993	83455547	714	116636											
MDP1	145553	broad.mit.edu	37	chr14	24684845	24684845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcggacgtcttggcccCgcctatctcgtacagttcca	9	15	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24684845	A	A	24684845	3	1	129	1	0	0	0	0	1	0	0	0	9509	652	23	1	424	1	MDP1	14	24684845	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	790852	24684845	82664695	715	116637											
PRKD1	5587	broad.mit.edu	37	chr14	30066936	30066936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacttctctccaatgatcCgggcaaaaccaaaatcacaa	5	12	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30066936	A	A	30066936	3	1	129	1	0	0	0	0	1	0	0	0	12624	652	23	1	555	1	PRKD1	14	30066936	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	5382091	30066936	77282604	716	116638											
SRP54	6729	broad.mit.edu	37	chr14	35498244	35498244	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataattctctgtttttaactCtacttccctacttttgctct	2	11	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35498244	G	G	35498244	1	3	129	0	1	0	0	0	0	0	0	0	15273	928	32	4		4	SRP54	14	35498244	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	5431308	35498244	71851296	717	116639											
KLHDC2	23588	broad.mit.edu	37	chr14	50249171	50249171	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caacttgcttgtccatcacaGagctgtaagtatactacctt	6	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50249171	C	C	50249171	3	2	129	1	0	0	0	0	1	0	0	0	8427	942	33	4	1082	4	KLHDC2	14	50249171	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	14750927	50249171	57100369	718	116640											
CGRRF1	10668	broad.mit.edu	37	chr14	55004779	55004779	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatttatttctttgattttcAgcaacttttcatgtctgcaa	4	7	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55004779	T	T	55004779	5	4	129	1	0	0	0	0	0	0	1	0	3336	202	7	5	699	5	CGRRF1	14	55004779	Splice_Site	SNP	A	TCGA-44-6777-01A-11D-1855-08	4755608	55004779	52344761	719	116641											
PELI2	57161	broad.mit.edu	37	chr14	56757264	56757264	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccctgatgttcagaacCtttgtgcaggtccaagcgcc	9	15	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56757264	T	T	56757264	1	4	129	0	1	0	0	0	0	0	0	0	11816	696	24	4		4	PELI2	14	56757264	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1752485	56757264	50592276	720	116642											
KIAA0586	9786	broad.mit.edu	37	chr14	58988698	58988698	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagacagcaccaatggcgaaGataactcttaagcacatagt	9	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58988698	T	T	58988698	1	4	129	0	1	0	0	0	0	0	0	0	8256	957	33	3		3	KIAA0586	14	58988698	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2231434	58988698	48360842	721	116643											
C14orf149	112849	broad.mit.edu	37	chr14	59942718	59942718	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagccagtgggacttcTgtcaacctgtttcagaataa	9	10	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59942718	A	A	59942718	4	1	129	1	0	0	0	0	0	1	0	0	1765	1588	55	5	264	5	C14orf149	14	59942718	Nonsense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	954020	59942718	47406822	722	116644											
FAM71D	161142	broad.mit.edu	37	chr14	67669985	67669985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagtctcctgacatctcctCctgcagagaaactagtgctc	7	13	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67669985	A	A	67669985	3	1	129	1	0	0	0	0	1	0	0	0	5661	855	30	3	340	3	FAM71D	14	67669985	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	7727267	67669985	39679555	723	116645											
GALNTL1	57452	broad.mit.edu	37	chr14	69787324	69787324	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagagttggcgtaaggcacAaatgaggccacgtggctggc	15	8	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69787324	T	T	69787324	1	4	129	0	1	0	0	0	0	0	0	0	6283	145	5	5		5	GALNTL1	14	69787324	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	2117339	69787324	37562216	724	116646											
MAP3K9	4293	broad.mit.edu	37	chr14	71197272	71197272	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcagggctggaagtccaGgccgctcctctacagtgctg	15	12	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71197272	C	C	71197272	3	2	129	1	0	0	0	0	1	0	0	0	9349	1000	35	4	178	4	MAP3K9	14	71197272	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1409948	71197272	36152268	725	116647											
PSEN1	5663	broad.mit.edu	37	chr14	73653716	73653716	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagccatgtactttgttgatGaattactctgaagttttaat	7	5	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73653716	T	T	73653716	1	4	129	0	1	0	0	0	0	0	0	0	12756	1305	45	3		3	PSEN1	14	73653716	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2456444	73653716	33695824	726	116648											
NRXN3	9369	broad.mit.edu	37	chr14	79454565	79454565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaggacaatatgtaaaaGgatggctcttctgaaagatt	9	4	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79454565	T	T	79454565	1	4	129	0	1	0	0	0	0	0	0	0	10762	1015	35	2		2	NRXN3	14	79454565	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	5800849	79454565	27894975	727	116649											
DIO2	1734	broad.mit.edu	37	chr14	80668656	80668656	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaataccctttatcttaacGtagacagtagcttccctaat	5	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80668656	T	T	80668656	1	4	129	0	1	0	0	0	0	0	0	0	4565	1160	40	3		3	DIO2	14	80668656	3'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	1214091	80668656	26680884	728	116650											
KIAA1409	57578	broad.mit.edu	37	chr14	94041456	94041456	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaactactaataagtatgtTttctgatggagttaattcag	7	5	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94041456	C	C	94041456	3	2	129	1	0	0	0	0	1	0	0	0	8300	1841	64	5	1646	5	KIAA1409	14	94041456	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	13372800	94041456	13308084	729	116651											
KIAA1409	57578	broad.mit.edu	37	chr14	94088614	94088614	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatccctccgtcctcagcCtgagcacagctccgcttgta	8	18	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94088614	G	G	94088614	3	3	129	1	0	0	0	0	1	0	0	0	8300	680	24	4	4610	4	KIAA1409	14	94088614	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	47158	94088614	13260926	730	116652											
KIAA1409	57578	broad.mit.edu	37	chr14	94121824	94121824	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgtttatttacaagcagcAgagtcttgggtgatttaatg	10	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94121824	G	G	94121824	1	3	129	0	1	0	0	0	0	0	0	0	8300	203	7	5		5	KIAA1409	14	94121824	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	33210	94121824	13227716	731	116653											
PPP4R4	57718	broad.mit.edu	37	chr14	94708736	94708736	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatacactattgctatttgCttttatgaagtaagtctgaa	7	5	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94708736	T	T	94708736	2	4	129	1	0	0	0	0	0	0	0	1	12506	805	28	4		4	PPP4R4	14	94708736	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	586912	94708736	12640804	732	116654											
OR4N4	283694	broad.mit.edu	37	chr15	22383458	22383458	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctggaattcatatcattcAtttaacaagtcctgtttttc	6	8	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22383458	T	T	22383458	1	4	129	0	1	0	0	0	0	0	0	0	11172	232	8	5		5	OR4N4	15	22383458	3'UTR	SNP	A	TCGA-44-6777-01A-11D-1855-08		22383458	80147934	733	116655											
NIPA1	123606	broad.mit.edu	37	chr15	23060865	23060865	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaccaggaccgtggggacCgccgtgtaagccaggaagtt	15	10	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23060865	A	A	23060865	2	1	129	1	0	0	0	0	0	0	0	1	10517	639	23	1		1	NIPA1	15	23060865	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	677407	23060865	79470527	734	116656											
GABRG3	2567	broad.mit.edu	37	chr15	27222202	27222202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcatcaaaccaaaagtGggtcttggctccaaaatccc	6	12	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27222202	T	T	27222202	3	4	129	1	0	0	0	0	1	0	0	0	6233	1357	47	2	113	2	GABRG3	15	27222202	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	4161337	27222202	75309190	735	116657											
RYR3	6263	broad.mit.edu	37	chr15	33928776	33928776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctaacaccctctgccaacCccagctccatgaggctggag	8	16	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33928776	A	A	33928776	1	1	129	0	1	0	0	0	0	0	0	0	13881	638	22	2		2	RYR3	15	33928776	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	6706574	33928776	68602616	736	116658											
RYR3	6263	broad.mit.edu	37	chr15	33954863	33954863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcagcggggcccacatccGagaccctgtaggggggtctg	17	12	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33954863	T	T	33954863	3	4	129	1	0	0	0	0	1	0	0	0	13881	1058	37	3	5270	3	RYR3	15	33954863	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	26087	33954863	68576529	737	116659											
ATPBD4	89978	broad.mit.edu	37	chr15	35814569	35814569	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattaccatctttcaccacCagtcaggctgtctctgctta	7	13	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35814569	A	A	35814569	1	1	129	0	1	0	0	0	0	0	0	0	1206	609	21	2		2	ATPBD4	15	35814569	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1859706	35814569	66716823	738	116660											
C15orf57	90416	broad.mit.edu	37	chr15	40846368	40846368	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtggctgtgtcagacctcActgattaattacttaatgat	10	7	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40846368	T	T	40846368	1	4	129	0	1	0	0	0	0	0	0	0	1818	174	6	5		5	C15orf57	15	40846368	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	5031799	40846368	61685024	739	116661											
MGA	23269	broad.mit.edu	37	chr15	42019659	42019660	+	Intron	DNP	GG	TT	TT													ccaaagtcatgtgtaaagatGgtgtgtttcaagcagatttt							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42019660	TT	TT	42019659	1	4	129	0	1	0	0	0	0	0	0	0	9633	1363	47	2		2	MGA	15	42019659	Intron	DNP	GG	TCGA-44-6777-01A-11D-1855-08	1173291	42019659	60511733	740	116662											
SPTBN5	51332	broad.mit.edu	37	chr15	42166580	42166580	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtgctcggctacccaagaGagctccatgttgctcaggtg	12	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42166580	A	A	42166580	2	1	129	1	0	0	0	0	0	0	0	1	15240	929	33	4		4	SPTBN5	15	42166580	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	146921	42166580	60364812	741	116663											
EPB42	2038	broad.mit.edu	37	chr15	43500462	43500462	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagcacttgggtgcagaatCtgccatccatcataaccctg	10	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43500462	A	A	43500462	3	1	129	1	0	0	0	0	1	0	0	0	5200	912	32	3	1058	3	EPB42	15	43500462	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1333882	43500462	59030930	742	116664											
MAP1A	4130	broad.mit.edu	37	chr15	43820365	43820365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggattcctcactgcccCagctcccatcacccagttct	6	19	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43820365	A	A	43820365	3	1	129	1	0	0	0	0	1	0	0	0	9319	595	21	2	6696	2	MAP1A	15	43820365	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	319903	43820365	58711027	743	116665											
DMXL2	23312	broad.mit.edu	37	chr15	51743895	51743895	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcccagaggcaaacatttCttttaaagaaacacaataac	5	9	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51743895	G	G	51743895	5	3	129	1	0	0	0	0	0	0	1	0	4635	927	32	4	492	4	DMXL2	15	51743895	Splice_Site	SNP	C	TCGA-44-6777-01A-11D-1855-08	7923530	51743895	50787497	744	116666											
HCN4	10021	broad.mit.edu	37	chr15	73617680	73617680	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgcccaggatgctctcctCgtcgaacatcttgccctggt	9	16	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73617680	A	A	73617680	4	1	129	1	0	0	0	0	0	1	0	0	7065	893	31	3	1931	3	HCN4	15	73617680	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	21873785	73617680	28913712	745	116667											
CYP11A1	1583	broad.mit.edu	37	chr15	74630854	74630854	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataggaggaggaagattggTgccttcattagggccagggc	17	6	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74630854	G	G	74630854	1	3	129	0	1	0	0	0	0	0	0	0	4177	1711	59	5		5	CYP11A1	15	74630854	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1013174	74630854	27900538	746	116668											
AKAP13	11214	broad.mit.edu	37	chr15	86273625	86273625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaggcagtgtgggtgGggagggtgtcctgtcttgtc	18	5	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86273625	T	T	86273625	1	4	129	0	1	0	0	0	0	0	0	0	449	1247	43	2		2	AKAP13	15	86273625	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	11642771	86273625	16257767	747	116669											
AGBL1	123624	broad.mit.edu	37	chr15	87066167	87066167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcattggccgaagtccCgtggtgagtcacttccttct	11	12	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87066167	A	A	87066167	2	1	129	1	0	0	0	0	0	0	0	1	375	639	23	1		1	AGBL1	15	87066167	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	792542	87066167	15465225	748	116670											
IQGAP1	8826	broad.mit.edu	37	chr15	91019795	91019795	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaatctgccagtgcagtaCaccttcatgtgagtttgcac	11	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91019795	T	T	91019795	1	4	129	0	1	0	0	0	0	0	0	0	7884	493	17	4		4	IQGAP1	15	91019795	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3953628	91019795	11511597	749	116671											
ADAMTS17	170691	broad.mit.edu	37	chr15	100801810	100801810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagaagctctccagggacCgctcaccatggtgcccaatg	11	14	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100801810	T	T	100801810	3	4	129	1	0	0	0	0	1	0	0	0	262	652	23	4	2450	4	ADAMTS17	15	100801810	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	9782015	100801810	1729582	750	116672											
SELS	55829	broad.mit.edu	37	chr15	101814919	101814919	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacattttacagaaagaattCagaagctgccatttctctca	5	10	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101814919	A	A	101814919	1	1	129	0	1	0	0	0	0	0	0	0	14134	841	29	3		3	SELS	15	101814919	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1013109	101814919	716473	751	116673											
WDR90	197335	broad.mit.edu	37	chr16	706348	706348	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgtcagccccgatggcctCcgtgtgctgtctgccacctc	11	16	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	706348	T	T	706348	2	4	129	1	0	0	0	0	0	0	0	1	17464	842	30	4		4	WDR90	16	706348	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08		706348	89648405	752	116674											
IFT140	9742	broad.mit.edu	37	chr16	1621515	1621515	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctcagtctccgagaaaagGaggagttgtttgacagtccc	11	11	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1621515	A	A	1621515	2	1	129	1	0	0	0	0	0	0	0	1	7626	1161	41	4		4	IFT140	16	1621515	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	915167	1621515	88733238	753	116675											
IFT140	9742	broad.mit.edu	37	chr16	1621553	1621553	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccctgaggaaaaggaacaaGaaatggatatatttcatgtt	9	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1621553	A	A	1621553	1	1	129	0	1	0	0	0	0	0	0	0	7626	957	33	4		4	IFT140	16	1621553	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	38	1621553	88733200	754	116676											
TRAF7	84231	broad.mit.edu	37	chr16	2213961	2213961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctacaaccgcttctccGgggggcccagcaatcttccc	9	19	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2213961	T	T	2213961	3	4	129	1	0	0	0	0	1	0	0	0	16570	1116	39	1	42	1	TRAF7	16	2213961	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	592408	2213961	88140792	755	116677											
SRRM2	23524	broad.mit.edu	37	chr16	2812991	2812991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcgctccagttcttctcCgccacctaaacagaaatcta	5	15	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2812991	A	A	2812991	3	1	129	1	0	0	0	0	1	0	0	0	15287	652	23	1	2500	1	SRRM2	16	2812991	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	599030	2812991	87541762	756	116678											
MEFV	4210	broad.mit.edu	37	chr16	3294343	3294343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggtccctcagccagggaCagatggaggagaggttgaag	16	7	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3294343	A	A	3294343	1	1	129	0	1	0	0	0	0	0	0	0	9552	493	17	3		3	MEFV	16	3294343	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	481352	3294343	87060410	757	116679											
MEFV	4210	broad.mit.edu	37	chr16	3299059	3299059	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctcctgccatctttagcTggtgccaactctggagggga	13	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3299059	A	A	3299059	1	1	129	0	1	0	0	0	0	0	0	0	9552	1595	55	5		5	MEFV	16	3299059	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	4716	3299059	87055694	758	116680											
SEC14L5	9717	broad.mit.edu	37	chr16	5064946	5064946	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcctccggccagtctcAtagcagctccctggtctcca	7	19	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5064946	G	G	5064946	3	3	129	1	0	0	0	0	1	0	0	0	14098	217	8	5	2124	5	SEC14L5	16	5064946	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	1765887	5064946	85289807	759	116681											
USP7	7874	broad.mit.edu	37	chr16	8990919	8990919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacattcttctaacaggtccCggacacacccatgcttgtct	6	14	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8990919	A	A	8990919	3	1	129	1	0	0	0	0	1	0	0	0	17215	652	23	1	576	1	USP7	16	8990919	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3925973	8990919	81363834	760	116682											
GRIN2A	2903	broad.mit.edu	37	chr16	9857858	9857858	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtagagtttatactggtcGttgttggaaagcccctcttc	11	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9857858	A	A	9857858	2	1	129	1	0	0	0	0	0	0	0	1	6845	1136	40	4		4	GRIN2A	16	9857858	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	866939	9857858	80496895	761	116683											
GRIN2A	2903	broad.mit.edu	37	chr16	10032087	10032087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatacccggtgaggccaaGggagcgggcctcactcagaa	13	12	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10032087	T	T	10032087	3	4	129	1	0	0	0	0	1	0	0	0	6845	1000	35	2	3702	2	GRIN2A	16	10032087	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	174229	10032087	80322666	762	116684											
ZC3H7A	29066	broad.mit.edu	37	chr16	11861348	11861348	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttttccatgatttatcttCaacattctttatcctaccga	2	10	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11861348	T	T	11861348	3	4	129	1	0	0	0	0	1	0	0	0	17698	835	29	4	1512	4	ZC3H7A	16	11861348	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1829261	11861348	78493405	763	116685											
XYLT1	64131	broad.mit.edu	37	chr16	17294297	17294297	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggagggacggacagaccCcgaagaaagcccagcaaggg	16	11	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17294297	T	T	17294297	1	4	129	0	1	0	0	0	0	0	0	0	17590	638	22	4		4	XYLT1	16	17294297	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	5432949	17294297	73060456	764	116686											
C16orf62	57020	broad.mit.edu	37	chr16	19586383	19586383	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaatgaacatactgccttcGatttttaaaatattaatgaa	4	6	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19586383	A	A	19586383	1	1	129	0	1	0	0	0	0	0	0	0	1839	1073	37	4		4	C16orf62	16	19586383	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2292086	19586383	70768370	765	116687											
ACSM2A	123876	broad.mit.edu	37	chr16	20492070	20492070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatctgggtctttactctGgctggttccagacttctgga	11	9	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20492070	T	T	20492070	1	4	129	0	1	0	0	0	0	0	0	0	183	1363	47	2		2	ACSM2A	16	20492070	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	905687	20492070	69862683	766	116688											
DNAH3	55567	broad.mit.edu	37	chr16	21011877	21011877	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggagagtctcggttgtggGcccaggaagctggaggtctt	18	7	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21011877	A	A	21011877	1	1	129	0	1	0	0	0	0	0	0	0	4643	1218	42	4		4	DNAH3	16	21011877	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	519807	21011877	69342876	767	116689											
OTOA	146183	broad.mit.edu	37	chr16	21737815	21737815	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggagcagccatgtgttcCtcctcttgttctccccatct	7	15	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21737815	T	T	21737815	1	4	129	0	1	0	0	0	0	0	0	0	11396	696	24	4		4	OTOA	16	21737815	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	725938	21737815	68616938	768	116690											
CACNG3	10368	broad.mit.edu	37	chr16	24372571	24372571	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctataatccattctcctctCtccccattacctccacattt	1	17	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24372571	T	T	24372571	1	4	129	0	1	0	0	0	0	0	0	0	2584	928	32	4		4	CACNG3	16	24372571	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2634756	24372571	65982182	769	116691											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25251807	25251807	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaagtctgtagggtctcTtccccacaaaaggcctctga	10	11	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25251807	C	C	25251807	3	2	129	1	0	0	0	0	1	0	0	0	17813	1609	56	5	673	5	ZKSCAN2	16	25251807	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	879236	25251807	65102946	770	116692											
HS3ST4	9951	broad.mit.edu	37	chr16	26044040	26044040	+	Intron	DEL	T	-	-													tctggctttggaggagcaggTttagcagacaacctcgcgga							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26044040	-	-	26044040	6	5	129	0	1	1	0	1	0	0	0	0	7434	1740	60	0		0	HS3ST4	16	26044040	Intron	DEL	T	TCGA-44-6777-01A-11D-1855-08	792233	26044040	64310713	771	116693											
IL21R	50615	broad.mit.edu	37	chr16	27441410	27441410	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgccgcgtggctgggcCgcccccttgctcctgctgct	13	17	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27441410	A	A	27441410	2	1	129	1	0	0	0	0	0	0	0	1	7741	639	23	1		1	IL21R	16	27441410	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1397370	27441410	62913343	772	116694											
GTF3C1	2975	broad.mit.edu	37	chr16	27480913	27480913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacctgagcataggccagCcagttgctactgcagcctct	10	13	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27480913	A	A	27480913	1	1	129	0	1	0	0	0	0	0	0	0	6937	754	26	3		3	GTF3C1	16	27480913	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	39503	27480913	62873840	773	116695											
RABEP2	79874	broad.mit.edu	37	chr16	28926016	28926016	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatctcctgaatcagctcctCggccctcagcagcttcgcct	8	17	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28926016	T	T	28926016	3	4	129	1	0	0	0	0	1	0	0	0	13070	893	31	4	1229	4	RABEP2	16	28926016	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1445103	28926016	61428737	774	116696											
ITGAL	3683	broad.mit.edu	37	chr16	30522247	30522247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggtaaacagctcctggGgggactcggttgaattgcac	13	10	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30522247	T	T	30522247	3	4	129	1	0	0	0	0	1	0	0	0	7956	1232	43	2	2755	2	ITGAL	16	30522247	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1596231	30522247	59832506	775	116697											
PHKG2	5261	broad.mit.edu	37	chr16	30762447	30762447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtgagctctgtggtccGccgttgtgttcatcgagcta	14	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30762447	T	T	30762447	3	4	129	1	0	0	0	0	1	0	0	0	11942	1087	38	3	122	3	PHKG2	16	30762447	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	240200	30762447	59592306	776	116698											
ITGAX	3687	broad.mit.edu	37	chr16	31373976	31373976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggggtgcagagcctgGtcctgggggccccccgctac	17	13	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31373976	T	T	31373976	3	4	129	1	0	0	0	0	1	0	0	0	7959	1261	44	3	1307	3	ITGAX	16	31373976	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	611529	31373976	58980777	777	116699											
SHCBP1	79801	broad.mit.edu	37	chr16	46615701	46615701	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgaactggttccccacaatCccaacaaacatctcctgtga	5	14	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46615701	A	A	46615701	2	1	129	1	0	0	0	0	0	0	0	1	14387	842	30	3		3	SHCBP1	16	46615701	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	15241725	46615701	43739052	778	116700											
RRAD	6236	broad.mit.edu	37	chr16	66957517	66957517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcacgccgcagctggaccCgcagttctgaggccttctcg	13	15	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66957517	A	A	66957517	3	1	129	1	0	0	0	0	1	0	0	0	13782	652	23	1	383	1	RRAD	16	66957517	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	20341816	66957517	23397236	779	116701											
DUS2L	54920	broad.mit.edu	37	chr16	68109434	68109434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcttggcctcagcttGggctagggccagcacccttg	12	15	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68109434	T	T	68109434	1	4	129	0	1	0	0	0	0	0	0	0	4846	1363	47	2		2	DUS2L	16	68109434	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1151917	68109434	22245319	780	116702											
NFAT5	10725	broad.mit.edu	37	chr16	69725991	69725991	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgtcacaactgactgagGcatcacaacaacagcagcag	8	11	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69725991	A	A	69725991	3	1	129	1	0	0	0	0	1	0	0	0	10455	1203	42	4	2313	4	NFAT5	16	69725991	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1616557	69725991	20628762	781	116703											
CLEC18C	283971	broad.mit.edu	37	chr16	70065846	70065846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgttacagggtacacggCacaagcaggggaagggcaag	16	7	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70065846	A	A	70065846	1	1	129	0	1	0	0	0	0	0	0	0	3536	725	25	3		3	CLEC18C	16	70065846	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	339855	70065846	20288907	782	116704											
CBFA2T3	863	broad.mit.edu	37	chr16	88958492	88958492	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggcaggcaggcagcccagGagctgggcacggcctgagag	19	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88958492	T	T	88958492	1	4	129	0	1	0	0	0	0	0	0	0	2724	1189	41	3		3	CBFA2T3	16	88958492	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	18892646	88958492	1396261	783	116705											
DPEP1	1800	broad.mit.edu	37	chr16	89704489	89704489	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacacaggctcccgaggaGgagcccatcccgctggacca	11	17	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89704489	A	A	89704489	2	1	129	1	0	0	0	0	0	0	0	1	4753	991	35	4		4	DPEP1	16	89704489	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	745997	89704489	650264	784	116706											
DPEP1	1800	broad.mit.edu	37	chr16	89704574	89704574	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccagcctccatcgccacTgggggctcctgctggcctcc	10	19	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89704574	G	G	89704574	3	3	129	1	0	0	0	0	1	0	0	0	4753	1580	55	5	1218	5	DPEP1	16	89704574	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	85	89704574	650179	785	116707											
KIAA0664	23277	broad.mit.edu	37	chr17	2606843	2606843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagcggggagagaaggccCcaaccgccccggtgagaggc	17	13	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2606843	A	A	2606843	1	1	129	0	1	0	0	0	0	0	0	0	8259	638	22	2		2	KIAA0664	17	2606843	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08		2606843	78588367	786	116708											
TRPV3	162514	broad.mit.edu	37	chr17	3417124	3417124	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagagccggactccacCatccctcaaagcctctctgc	7	19	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3417124	T	T	3417124	1	4	129	0	1	0	0	0	0	0	0	0	16722	609	21	4		4	TRPV3	17	3417124	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	810281	3417124	77778086	787	116709											
SMTNL2	342527	broad.mit.edu	37	chr17	4498477	4498477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccccagtcgcccgtgtccCcgcagccgccagccataact	8	21	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4498477	A	A	4498477	3	1	129	1	0	0	0	0	1	0	0	0	14930	623	22	2	862	2	SMTNL2	17	4498477	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1081353	4498477	76696733	788	116710											
SPAG7	9552	broad.mit.edu	37	chr17	4863187	4863187	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcccctgctgggctgcctCctcctcttgcctctgggcca	11	18	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4863187	T	T	4863187	3	4	129	1	0	0	0	0	1	0	0	0	15099	864	30	4	249	4	SPAG7	17	4863187	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	364710	4863187	76332023	789	116711											
WSCD1	23302	broad.mit.edu	37	chr17	6012865	6012865	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttcatcccattcctgagCcctgggaagcatgaccctca	8	14	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6012865	T	T	6012865	1	4	129	0	1	0	0	0	0	0	0	0	17533	754	26	4		4	WSCD1	17	6012865	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1149678	6012865	75182345	790	116712											
TP53	7157	broad.mit.edu	37	chr17	7577547	7577547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgggcctccggttcatgCcgcccatgcaggaactgtta	13	12	1	0	rs121912656		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577547	A	A	7577547	3	1	129	1	0	0	0	0	1	0	0	0	16505	739	26	3	556	3	TP53	17	7577547	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1564682	7577547	73617663	791	116713											
MYH13	8735	broad.mit.edu	37	chr17	10227215	10227215	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaactacccttcaccttgaCgccagcctctcatttctggg	6	15	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10227215	A	A	10227215	1	1	129	0	1	0	0	0	0	0	0	0	10126	551	19	3		3	MYH13	17	10227215	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2649668	10227215	70967995	792	116714											
MYH2	4620	broad.mit.edu	37	chr17	10448670	10448670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggctcactcaccagtcagCatgaactgataggcgttgtc	10	12	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10448670	A	A	10448670	3	1	129	1	0	0	0	0	1	0	0	0	10129	710	25	3	5471	3	MYH2	17	10448670	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	221455	10448670	70746540	793	116715											
DNAH9	1770	broad.mit.edu	37	chr17	11687720	11687720	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcggaaacttcccggCgtccctgcagaaatccatcc	9	15	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11687720	T	T	11687720	3	4	129	1	0	0	0	0	1	0	0	0	4648	768	27	4	8087	4	DNAH9	17	11687720	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1239050	11687720	69507490	794	116716											
RAI1	10743	broad.mit.edu	37	chr17	17707009	17707009	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacctggcctaccagcctGtaaagcttgagggctgggct	13	12	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17707009	T	T	17707009	1	4	129	0	1	0	0	0	0	0	0	0	13115	1392	48	3		3	RAI1	17	17707009	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	6019289	17707009	63488201	795	116717											
SMCR7	125170	broad.mit.edu	37	chr17	18167939	18167939	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagccctggagctgctcaTcggcagcctggagcaggcca	14	14	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18167939	G	G	18167939	3	3	129	1	0	0	0	0	1	0	0	0	14904	1435	50	5	1273	5	SMCR7	17	18167939	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	460930	18167939	63027271	796	116718											
TRIM16L	147166	broad.mit.edu	37	chr17	18631143	18631143	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctttgctaggcccatgGccatctgtgaatggaactgt	10	11	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18631143	A	A	18631143	1	1	129	0	1	0	0	0	0	0	0	0	16616	1218	42	4		4	TRIM16L	17	18631143	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	463204	18631143	62564067	797	116719											
SLC47A1	55244	broad.mit.edu	37	chr17	19470344	19470344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagaatatgaagtgctcGggagatgggagtgtttcaag	15	5	1	3	rs114637940	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19470344	T	T	19470344	1	4	129	0	1	0	0	0	0	0	0	0	14761	1131	39	1		1	SLC47A1	17	19470344	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	839201	19470344	61724866	798	116720											
NOS2	4843	broad.mit.edu	37	chr17	26084400	26084400	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttaggtaaaaacagagaGcaacgtgtcaagtccaggct	10	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26084400	A	A	26084400	1	1	129	0	1	0	0	0	0	0	0	0	10638	986	34	4		4	NOS2	17	26084400	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	6614056	26084400	55110810	799	116721											
NOS2	4843	broad.mit.edu	37	chr17	26094781	26094781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgagcctgtagtggtgcGggtcccaggtcacattggag	16	10	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26094781	T	T	26094781	3	4	129	1	0	0	0	0	1	0	0	0	10638	1116	39	1	1384	1	NOS2	17	26094781	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	10381	26094781	55100429	800	116722											
NOS2	4843	broad.mit.edu	37	chr17	26116034	26116034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtcttagagtggggaaGgatctatgggtggccacaca	14	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26116034	T	T	26116034	1	4	129	0	1	0	0	0	0	0	0	0	10638	1015	35	2		2	NOS2	17	26116034	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	21253	26116034	55079176	801	116723											
NEK8	284086	broad.mit.edu	37	chr17	27061971	27061971	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccgcatggtcgtcaagatCggtgatttcggcatctccaa	10	12	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27061971	T	T	27061971	2	4	129	1	0	0	0	0	0	0	0	1	10425	874	31	4		4	NEK8	17	27061971	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	945937	27061971	54133239	802	116724											
MYO18A	399687	broad.mit.edu	37	chr17	27445428	27445428	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaatcccaaacacattgttCtctgccaagtggttgaggtg	9	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27445428	G	G	27445428	3	3	129	1	0	0	0	0	1	0	0	0	10159	912	32	4	4440	4	MYO18A	17	27445428	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	383457	27445428	53749782	803	116725											
TAOK1	57551	broad.mit.edu	37	chr17	27861114	27861115	+	Intron	DEL	TC	-	-													taggatatatctttttttttTctctctctctctctgtctca					rs80075693		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27861115	-	-	27861114	6	5	129	0	1	1	0	1	0	0	0	0	15666	1798	62	0		0	TAOK1	17	27861114	Intron	DEL	TC	TCGA-44-6777-01A-11D-1855-08	415686	27861114	53334096	804	116726											
CCL15	6359	broad.mit.edu	37	chr17	34325505	34325505	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtgagaaggcacaagccTctgaagacatgtttctcctc	11	10	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34325505	C	C	34325505	1	2	129	0	1	0	0	0	0	0	0	0	2914	1566	54	5		5	CCL15	17	34325505	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	6464391	34325505	46869705	805	116727											
TBC1D3C	414060	broad.mit.edu	37	chr17	34641353	34641353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccccacatggaccatgGtcaggcagaggaagatgcct	13	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34641353	A	A	34641353	1	1	129	0	1	0	0	0	0	0	0	0	15741	1276	44	4		4	TBC1D3C	17	34641353	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	315848	34641353	46553857	806	116728											
C17orf98	388381	broad.mit.edu	37	chr17	36993484	36993484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccatcccttcctgtacCgccatgatcctgaaagtggg	9	15	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36993484	A	A	36993484	3	1	129	1	0	0	0	0	1	0	0	0	1911	652	23	1	255	1	C17orf98	17	36993484	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2352131	36993484	44201726	807	116729											
LASP1	3927	broad.mit.edu	37	chr17	37070638	37070638	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctagcgggggcgagggcatgGagccagagcgtcgggattca	19	9	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37070638	C	C	37070638	3	2	129	1	0	0	0	0	1	0	0	0	8709	1175	41	4	436	4	LASP1	17	37070638	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	77154	37070638	44124572	808	116730											
CACNB1	782	broad.mit.edu	37	chr17	37334427	37334428	+	Intron	INS	-	T	T													ggttggatcagcatggagagINSccagtgtcaagacccttgaa							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37334428	T	T	37334427	6	5	129	0	1	1	1	0	0	0	0	0	2578	986	34	0		0	CACNB1	17	37334427	Intron	INS	-	TCGA-44-6777-01A-11D-1855-08	263789	37334427	43860783	809	116731											
PSMD3	5709	broad.mit.edu	37	chr17	38153669	38153669	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgggtgagaccgaaaggtCaaacttccacacagaagggg	13	9	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38153669	G	G	38153669	1	3	129	0	1	0	0	0	0	0	0	0	12805	841	29	4		4	PSMD3	17	38153669	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	819242	38153669	43041541	810	116732											
KRT34	3885	broad.mit.edu	37	chr17	39535671	39535671	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctcagctcgatgatctcCgcctggcaggactgcagctg	12	14	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39535671	A	A	39535671	2	1	129	1	0	0	0	0	0	0	0	1	8542	639	23	1		1	KRT34	17	39535671	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1382002	39535671	41659539	811	116733											
HAP1	9001	broad.mit.edu	37	chr17	39883481	39883481	+	Intron	SNP	C	T	T													acagaagggaactgggatctCaatcagccaccaaggctgag							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39883481	T	T	39883481	1	4	129	0	1	0	0	0	0	0	0	0	7019	841	29	4		4	HAP1	17	39883481	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	347810	39883481	41311729	812	116734	510	2									
HAP1	9001	broad.mit.edu	37	chr17	39883485	39883485	+	Intron	SNP	C	A	A													aagggaactgggatctcaatCagccaccaaggctgagacac							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39883485	A	A	39883485	1	1	129	0	1	0	0	0	0	0	0	0	7019	841	29	3		3	HAP1	17	39883485	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	4	39883485	41311725	813	116735	510	2									
FKBP10	60681	broad.mit.edu	37	chr17	39974664	39974664	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcacttatgacacctaCgtcggctctggttggctgat	13	11	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39974664	T	T	39974664	2	4	129	1	0	0	0	0	0	0	0	1	5959	547	19	4		4	FKBP10	17	39974664	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	91179	39974664	41220546	814	116736											
KCNH4	23415	broad.mit.edu	37	chr17	40312479	40312479	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaacacatcgagttgtttCacaggtgccacagtaataac	8	9	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40312479	G	G	40312479	1	3	129	0	1	0	0	0	0	0	0	0	8104	841	29	4		4	KCNH4	17	40312479	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	337815	40312479	40882731	815	116737											
ATP6V0A1	535	broad.mit.edu	37	chr17	40666456	40666456	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagggcctctcggcctttCtccacgcactgcgcttacac	10	16	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40666456	T	T	40666456	3	4	129	1	0	0	0	0	1	0	0	0	1172	913	32	4	2497	4	ATP6V0A1	17	40666456	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	353977	40666456	40528754	816	116738											
TUBG1	7283	broad.mit.edu	37	chr17	40766905	40766905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgacaagctgcgtaagcGggaggccttcctggagcagt	15	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40766905	T	T	40766905	3	4	129	1	0	0	0	0	1	0	0	0	16890	1116	39	1	1244	1	TUBG1	17	40766905	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	100449	40766905	40428305	817	116739											
CCR10	2826	broad.mit.edu	37	chr17	40831557	40831557	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcagcctgccccctcctCtagattcgcagccctagttg	7	19	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40831557	T	T	40831557	1	4	129	0	1	0	0	0	0	0	0	0	2970	928	32	4		4	CCR10	17	40831557	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	64652	40831557	40363653	818	116740											
UBTF	7343	broad.mit.edu	37	chr17	42290100	42290100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcctcctctcctgctccCctgcaccgtgcccggccgac	11	21	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42290100	A	A	42290100	1	1	129	0	1	0	0	0	0	0	0	0	17035	638	22	2		2	UBTF	17	42290100	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1458543	42290100	38905110	819	116741											
MAP3K14	9020	broad.mit.edu	37	chr17	43343870	43343870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcagatcagctgccacGgggactgctgagcaggtggg	17	11	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43343870	T	T	43343870	1	4	129	0	1	0	0	0	0	0	0	0	9340	1131	39	1		1	MAP3K14	17	43343870	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1053770	43343870	37851340	820	116742											
KIAA1267	284058	broad.mit.edu	37	chr17	44249069	44249069	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggtgcttgtggcagagcTgtctgaccactcgtattcat	11	10	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44249069	A	A	44249069	2	1	129	1	0	0	0	0	0	0	0	1	8289	1567	55	5		5	KIAA1267	17	44249069	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	905199	44249069	36946141	821	116743											
C17orf57	124989	broad.mit.edu	37	chr17	45481415	45481415	+	Intron	DEL	T	-	-													ttttaaatattactctcaggTtttttttttgtaggagtaaa							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45481415	-	-	45481415	6	5	129	0	1	1	0	1	0	0	0	0	1881	1740	60	0		0	C17orf57	17	45481415	Intron	DEL	T	TCGA-44-6777-01A-11D-1855-08	1232346	45481415	35713795	822	116744											
ABCC3	8714	broad.mit.edu	37	chr17	48733380	48733380	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcaagatggtcagtggctCagggatctcctaccgatggg	14	10	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48733380	G	G	48733380	1	3	129	0	1	0	0	0	0	0	0	0	54	841	29	4		4	ABCC3	17	48733380	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3251965	48733380	32461830	823	116745											
RAD51C	5889	broad.mit.edu	37	chr17	56780677	56780677	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttcttccagatttcctttCagaacactcaaaggtatgag	6	10	4	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56780677	T	T	56780677	3	4	129	1	0	0	0	0	1	0	0	0	13096	838	29	4	710	4	RAD51C	17	56780677	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	8047297	56780677	24414533	824	116746											
PPM1E	22843	broad.mit.edu	37	chr17	56976845	56976845	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgatgagcctgtgtatgtCacgttggtggaggcccttag	15	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56976845	T	T	56976845	1	4	129	0	1	0	0	0	0	0	0	0	12439	841	29	4		4	PPM1E	17	56976845	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	196168	56976845	24218365	825	116747											
CA4	762	broad.mit.edu	37	chr17	58236712	58236712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtccggggccccgggtcGgccgctgccctgggccctgc	16	17	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58236712	T	T	58236712	3	4	129	1	0	0	0	0	1	0	0	0	2544	1116	39	1	896	1	CA4	17	58236712	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1259867	58236712	22958498	826	116748											
SCN4A	6329	broad.mit.edu	37	chr17	62045265	62045265	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcacctttgcactccagCctgggtgacaagagtgagac	12	11	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62045265	G	G	62045265	1	3	129	0	1	0	0	0	0	0	0	0	14033	754	26	4		4	SCN4A	17	62045265	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3808553	62045265	19149945	827	116749											
PITPNC1	26207	broad.mit.edu	37	chr17	65688837	65688837	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccttctagtgctccatccAcccctctctccacagacgca	5	20	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65688837	T	T	65688837	3	4	129	1	0	0	0	0	1	0	0	0	12044	159	6	5	989	5	PITPNC1	17	65688837	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	3643572	65688837	15506373	828	116750											
BPTF	2186	broad.mit.edu	37	chr17	65936499	65936499	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtgttgaattatttcaAttcaaaataatgccaagggt	9	4	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65936499	C	C	65936499	1	2	129	0	1	0	0	0	0	0	0	0	1504	116	4	5		5	BPTF	17	65936499	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	247662	65936499	15258711	829	116751											
ABCA8	10351	broad.mit.edu	37	chr17	66872911	66872911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataagaggataacccaagCaagggtggagaagcagaact	13	6	0	4	rs113143298		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66872911	A	A	66872911	1	1	129	0	1	0	0	0	0	0	0	0	38	725	25	3		3	ABCA8	17	66872911	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	936412	66872911	14322299	830	116752											
ABCA8	10351	broad.mit.edu	37	chr17	66883272	66883272	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaccaacagcacatgggatCtaaaatcaacaggaatgtga	8	8	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66883272	A	A	66883272	5	1	129	1	0	0	0	0	0	0	1	0	38	927	32	3	1610	3	ABCA8	17	66883272	Splice_Site	SNP	C	TCGA-44-6777-01A-11D-1855-08	10361	66883272	14311938	831	116753											
ABCA6	23460	broad.mit.edu	37	chr17	67080517	67080517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaatgtagaaaaacaccCctgtttgctgccataccaca	6	13	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67080517	A	A	67080517	1	1	129	0	1	0	0	0	0	0	0	0	36	638	22	2		2	ABCA6	17	67080517	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	197245	67080517	14114693	832	116754											
CD300LB	124599	broad.mit.edu	37	chr17	72522083	72522083	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtttcaatgaggatcttGcatgtatcccagcgcacccc	9	13	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72522083	A	A	72522083	2	1	129	1	0	0	0	0	0	0	0	1	3029	1311	46	4		4	CD300LB	17	72522083	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	5441566	72522083	8673127	833	116755											
SLC9A3R1	9368	broad.mit.edu	37	chr17	72764254	72764254	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaccccctcaccccatcctCtgacaacccacaaccctctc	3	23	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72764254	G	G	72764254	1	3	129	0	1	0	0	0	0	0	0	0	14828	928	32	4		4	SLC9A3R1	17	72764254	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	242171	72764254	8430956	834	116756											
LLGL2	3993	broad.mit.edu	37	chr17	73569271	73569271	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccaggtggtctcgctgccCctgctcaagccccaggtgcg	12	16	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73569271	T	T	73569271	2	4	129	1	0	0	0	0	0	0	0	1	8908	610	22	4		4	LLGL2	17	73569271	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	805017	73569271	7625939	835	116757											
NPLOC4	55666	broad.mit.edu	37	chr17	79535908	79535908	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaccagcagtgccccacagTaggccctagctggcctgtca	11	15	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79535908	A	A	79535908	1	1	129	0	1	0	0	0	0	0	0	0	10681	1653	57	5		5	NPLOC4	17	79535908	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	5966637	79535908	1659302	836	116758											
COLEC12	81035	broad.mit.edu	37	chr18	321670	321670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctactgctcacctgtctccCtgtctttttcgcaaatgaag	6	13	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	321670	A	A	321670	3	1	129	1	0	0	0	0	1	0	0	0	3744	681	24	2	35	2	COLEC12	18	321670	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08		321670	77755578	837	116759											
PTPRM	5797	broad.mit.edu	37	chr18	8085888	8085888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtactctacattcgtgaGttgtgtcttttatcagaagt	9	7	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8085888	T	T	8085888	1	4	129	0	1	0	0	0	0	0	0	0	12914	1044	36	3		3	PTPRM	18	8085888	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	7764218	8085888	69991360	838	116760											
DSC1	1823	broad.mit.edu	37	chr18	28710701	28710701	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaagagcacattttatTattttttaaaaaacacctaa	2	6	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28710701	A	A	28710701	1	1	129	0	1	0	0	0	0	0	0	0	4805	1769	61	5		5	DSC1	18	28710701	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	20624813	28710701	49366547	839	116761											
DSG3	1830	broad.mit.edu	37	chr18	29039937	29039937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctaagcagaaacactgGggaagtccgtactttgacca	9	12	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29039937	T	T	29039937	3	4	129	1	0	0	0	0	1	0	0	0	4818	1232	43	2	669	2	DSG3	18	29039937	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	329236	29039937	49037311	840	116762											
ASXL3	80816	broad.mit.edu	37	chr18	31322919	31322919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtctccaaacctgagtctcGagcatccactagcacatctg	7	14	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31322919	T	T	31322919	3	4	129	1	0	0	0	0	1	0	0	0	1072	1058	37	3	3153	3	ASXL3	18	31322919	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2282982	31322919	46754329	841	116763											
DTNA	1837	broad.mit.edu	37	chr18	32373974	32373974	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccttccattactttgggctGatgtgttaactctgctttaa	8	9	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32373974	A	A	32373974	1	1	129	0	1	0	0	0	0	0	0	0	4828	1305	45	4		4	DTNA	18	32373974	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1051055	32373974	45703274	842	116764											
MOCOS	55034	broad.mit.edu	37	chr18	33800118	33800118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcagaagcaggaaccccGgctctgcctgatccagccct	11	15	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33800118	T	T	33800118	3	4	129	1	0	0	0	0	1	0	0	0	9783	1116	39	1	1932	1	MOCOS	18	33800118	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1426144	33800118	44277130	843	116765											
SMAD2	4087	broad.mit.edu	37	chr18	45371730	45371730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggtattctgctccccaccCtttcacaaaactcattctta	3	16	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45371730	A	A	45371730	3	1	129	1	0	0	0	0	1	0	0	0	14872	681	24	2	150	2	SMAD2	18	45371730	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	11571612	45371730	32705518	844	116766											
TCF4	6925	broad.mit.edu	37	chr18	53254163	53254164	+	Intron	DNP	CC	AA	AA													catatttaccaaggattcagCcaattaaaaattattactgt							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	53254164	AA	AA	53254163	1	1	129	0	1	0	0	0	0	0	0	0	15817	754	26	3		3	TCF4	18	53254163	Intron	DNP	CC	TCGA-44-6777-01A-11D-1855-08	7882433	53254163	24823085	845	116767											
LMAN1	3998	broad.mit.edu	37	chr18	57013159	57013159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacaactcaccaggctgcCcttggaggtcggggtggccc	14	14	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57013159	A	A	57013159	3	1	129	1	0	0	0	0	1	0	0	0	8910	623	22	2	609	2	LMAN1	18	57013159	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3758996	57013159	21064089	846	116768											
ATP9B	374868	broad.mit.edu	37	chr18	76856370	76856370	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttatttataatgctttcCctcagctgaagacagcctaa	6	10	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76856370	T	T	76856370	1	4	129	0	1	0	0	0	0	0	0	0	1203	638	22	4		4	ATP9B	18	76856370	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	19843211	76856370	1220878	847	116769											
TMEM146	257062	broad.mit.edu	37	chr19	5763373	5763373	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactcatggaagctggccctGaggttgcaatgagctgagat	14	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5763373	C	C	5763373	1	2	129	0	1	0	0	0	0	0	0	0	16183	1305	45	4		4	TMEM146	19	5763373	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08		5763373	53365610	848	116770											
C3	718	broad.mit.edu	37	chr19	6710817	6710817	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcctggccgggctctcgcaCctggcgtcccgccttcaaca	11	18	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6710817	G	G	6710817	3	3	129	1	0	0	0	0	1	0	0	0	2226	507	18	4	3588	4	C3	19	6710817	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	947444	6710817	52418166	849	116771											
ADAMTS10	81794	broad.mit.edu	37	chr19	8651427	8651427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggctgcaccttgccccCagtctccctgttaccatgac	7	17	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8651427	A	A	8651427	1	1	129	0	1	0	0	0	0	0	0	0	256	609	21	2		2	ADAMTS10	19	8651427	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1940610	8651427	50477556	850	116772											
ADAMTS10	81794	broad.mit.edu	37	chr19	8657674	8657674	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgatggtgtgcgtctggcaCagcgtgccctcggcggccgg	17	13	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8657674	T	T	8657674	2	4	129	1	0	0	0	0	0	0	0	1	256	465	17	4		4	ADAMTS10	19	8657674	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	6247	8657674	50471309	851	116773											
MUC16	94025	broad.mit.edu	37	chr19	8994389	8994389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagacaaggtgggcagGgcagagtgaggtgggcaggg	21	5	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8994389	T	T	8994389	1	4	129	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	8994389	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	336715	8994389	50134594	852	116774											
MUC16	94025	broad.mit.edu	37	chr19	9073651	9073651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttcgtccagcagtcaGggaggatgttggctctccct	11	12	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9073651	T	T	9073651	3	4	129	1	0	0	0	0	1	0	0	0	10067	991	35	2	30056	2	MUC16	19	9073651	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	79262	9073651	50055332	853	116775											
MUC16	94025	broad.mit.edu	37	chr19	9083145	9083145	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctcagaaaactcaaatgtCaaggtagactgtgggatccc	9	10	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9083145	T	T	9083145	2	4	129	1	0	0	0	0	0	0	0	1	10067	825	29	4		4	MUC16	19	9083145	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	9494	9083145	50045838	854	116776											
ZNF559	84527	broad.mit.edu	37	chr19	9452607	9452607	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagccttcagccaacatctAcatcttgtttgcaagaaaac	5	12	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9452607	T	T	9452607	2	4	129	1	0	0	0	0	0	0	0	1	18117	378	14	5		5	ZNF559	19	9452607	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	369462	9452607	49676376	855	116777											
ZNF121	7675	broad.mit.edu	37	chr19	9677452	9677452	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctgttcatagagtgtttCtccattgtgagttatcctat	7	8	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9677452	A	A	9677452	4	1	129	1	0	0	0	0	0	1	0	0	17845	922	32	3	839	3	ZNF121	19	9677452	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	224845	9677452	49451531	856	116778											
ICAM1	3383	broad.mit.edu	37	chr19	10395694	10395694	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcacccgcaaggtgaccgtGaatgtgctctgtgagtgagc	14	10	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10395694	C	C	10395694	2	2	129	1	0	0	0	0	0	0	0	1	7549	1277	45	4		4	ICAM1	19	10395694	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	718242	10395694	48733289	857	116779											
RGL3	57139	broad.mit.edu	37	chr19	11526554	11526554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggagagaaagcctgtgtGggaagaagcagacaggaaag	18	4	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11526554	T	T	11526554	1	4	129	0	1	0	0	0	0	0	0	0	13386	1363	47	2		2	RGL3	19	11526554	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1130860	11526554	47602429	858	116780											
PRKCSH	5589	broad.mit.edu	37	chr19	11552357	11552357	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaagtataatagttcccgAgggggaggctgtcagcttag	14	7	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11552357	T	T	11552357	1	4	129	0	1	0	0	0	0	0	0	0	12622	319	11	5		5	PRKCSH	19	11552357	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	25803	11552357	47576626	859	116781											
CNN1	1264	broad.mit.edu	37	chr19	11657616	11657616	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcagacctcccctcccCacccagtgaccaccacctgc	4	25	1	2	rs147357819	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11657616	A	A	11657616	1	1	129	0	1	0	0	0	0	0	0	0	3641	609	21	2		2	CNN1	19	11657616	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	105259	11657616	47471367	860	116782											
ZNF823	55552	broad.mit.edu	37	chr19	11833104	11833104	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacattgtttacattgataGggtttctctccagtgtgagt	9	8	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11833104	T	T	11833104	2	4	129	1	0	0	0	0	0	0	0	1	18308	987	35	2		2	ZNF823	19	11833104	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	175488	11833104	47295879	861	116783											
RTBDN	83546	broad.mit.edu	37	chr19	12940505	12940505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccattcttcagcactatcCgtgcctcccaccttggtggc	7	17	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12940505	A	A	12940505	1	1	129	0	1	0	0	0	0	0	0	0	13828	667	23	1		1	RTBDN	19	12940505	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1107401	12940505	46188478	862	116784											
ZSWIM4	65249	broad.mit.edu	37	chr19	13941217	13941217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactgcgccttgcctgccCtgaccctgtgcgagaagaac	11	14	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13941217	A	A	13941217	3	1	129	1	0	0	0	0	1	0	0	0	18372	680	24	2	2373	2	ZSWIM4	19	13941217	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1000712	13941217	45187766	863	116785											
UNC13A	23025	broad.mit.edu	37	chr19	17720621	17720621	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccctttccagcacccccAcctagaatgtggcccctccc	5	21	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17720621	T	T	17720621	1	4	129	0	1	0	0	0	0	0	0	0	17110	174	6	5		5	UNC13A	19	17720621	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	3779404	17720621	41408362	864	116786											
UNC13A	23025	broad.mit.edu	37	chr19	17758070	17758070	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatggcggcccacgcccccTcaccggtgatgctgatcttg	11	16	2	2	rs113053103		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17758070	C	C	17758070	1	2	129	0	1	0	0	0	0	0	0	0	17110	1566	54	5		5	UNC13A	19	17758070	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	37449	17758070	41370913	865	116787											
UNC13A	23025	broad.mit.edu	37	chr19	17777334	17777334	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatttctaatacactgtaAgtggacactgcactctcagg	8	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17777334	C	C	17777334	1	2	129	0	1	0	0	0	0	0	0	0	17110	87	3	5		5	UNC13A	19	17777334	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	19264	17777334	41351649	866	116788											
KLHL26	55295	broad.mit.edu	37	chr19	18775281	18775281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccccaggcagctggaaGgggcggctgcctgttgggac	18	12	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18775281	T	T	18775281	1	4	129	0	1	0	0	0	0	0	0	0	8452	1015	35	2		2	KLHL26	19	18775281	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	997947	18775281	40353702	867	116789											
SFRS14	10147	broad.mit.edu	37	chr19	19121141	19121141	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atactccagactattttcatCagacaaaaacctagataaca	3	10	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19121141	G	G	19121141	3	3	129	1	0	0	0	0	1	0	0	0	14283	826	29	4	1411	4	SFRS14	19	19121141	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	345860	19121141	40007842	868	116790											
ARMC6	93436	broad.mit.edu	37	chr19	19166660	19166660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtaagcccgacaacagcCgcatcatcgtggagggtggc	14	12	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19166660	A	A	19166660	3	1	129	1	0	0	0	0	1	0	0	0	959	652	23	1	1163	1	ARMC6	19	19166660	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	45519	19166660	39962323	869	116791											
SLC25A42	284439	broad.mit.edu	37	chr19	19216420	19216420	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacgagggatttctcagCttgtggcgcgggaactcggc	14	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19216420	T	T	19216420	2	4	129	1	0	0	0	0	0	0	0	1	14621	796	28	4		4	SLC25A42	19	19216420	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	49760	19216420	39912563	870	116792											
NCAN	1463	broad.mit.edu	37	chr19	19338336	19338336	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctccctatgatggccatgcTgcgtggtcccaaagagtgga	12	11	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19338336	A	A	19338336	3	1	129	1	0	0	0	0	1	0	0	0	10299	1580	55	5	1933	5	NCAN	19	19338336	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	121916	19338336	39790647	871	116793											
KIAA0892	23383	broad.mit.edu	37	chr19	19454666	19454666	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggactgcagccccatcCtgtcatccttccaagtgatc	8	15	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19454666	T	T	19454666	2	4	129	1	0	0	0	0	0	0	0	1	8266	680	24	4		4	KIAA0892	19	19454666	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	116330	19454666	39674317	872	116794											
ZNF737	100129842	broad.mit.edu	37	chr19	20727531	20727531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatgtctagtaaggataaagGagcgcttaaaagccttgcca	10	7	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20727531	A	A	20727531	3	1	129	1	0	0	0	0	1	0	0	0	18255	1174	41	4	136	4	ZNF737	19	20727531	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1272865	20727531	38401452	873	116795											
ZNF676	163223	broad.mit.edu	37	chr19	22363099	22363099	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacatttgtaaggtttctCtgcagcatgaattctcttgt	7	8	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363099	A	A	22363099	4	1	129	1	0	0	0	0	0	1	0	0	18210	922	32	3	350	3	ZNF676	19	22363099	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1635568	22363099	36765884	874	116796											
ZNF492	57615	broad.mit.edu	37	chr19	22847414	22847415	+	Missense_Mutation	DNP	GG	TT	TT													tctacaaatgtgaagaatgtGgtaaggcctttagccagtta							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22847415	TT	TT	22847414	3	4	129	1	0	0	0	0	1	0	0	0	18070	1348	47	2	953	2	ZNF492	19	22847414	Missense_Mutation	DNP	GG	TCGA-44-6777-01A-11D-1855-08	484315	22847414	36281569	875	116797											
ZNF254	9534	broad.mit.edu	37	chr19	24288563	24288563	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatattttgccactctatttTctcagagttagagaatacat	6	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24288563	C	C	24288563	1	2	129	0	1	0	0	0	0	0	0	0	17924	1798	62	5		5	ZNF254	19	24288563	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1441149	24288563	34840420	876	116798											
ZNF536	9745	broad.mit.edu	37	chr19	30936456	30936456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcaagggcgaggaggatGggctgcacgtgggcctggat	19	9	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30936456	T	T	30936456	3	4	129	1	0	0	0	0	1	0	0	0	18101	1348	47	2	1989	2	ZNF536	19	30936456	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	6647893	30936456	28192527	877	116799											
ZNF536	9745	broad.mit.edu	37	chr19	31039052	31039052	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacatcctgaggggggccttCaagggtctccctggaatcga	14	11	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039052	A	A	31039052	3	1	129	1	0	0	0	0	1	0	0	0	18101	825	29	3	2536	3	ZNF536	19	31039052	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	102596	31039052	28089931	878	116800											
DPY19L3	147991	broad.mit.edu	37	chr19	32949374	32949374	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacatattcgttctgtccatCacagtgattgtagcattcgt	7	9	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32949374	T	T	32949374	2	4	129	1	0	0	0	0	0	0	0	1	4782	816	29	4		4	DPY19L3	19	32949374	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1910322	32949374	26179609	879	116801											
ZNF585A	199704	broad.mit.edu	37	chr19	37643728	37643728	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtaaaggccttcccacacTcagtacatatggaagatttc	8	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37643728	A	A	37643728	3	1	129	1	0	0	0	0	1	0	0	0	18144	1551	54	5	1240	5	ZNF585A	19	37643728	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	4694354	37643728	21485255	880	116802											
SHKBP1	92799	broad.mit.edu	37	chr19	41086395	41086395	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctccctcaccctcaggtaCgtttctatctcgtggaaggt	8	15	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41086395	G	G	41086395	1	3	129	0	1	0	0	0	0	0	0	0	14397	551	19	4		4	SHKBP1	19	41086395	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3442667	41086395	18042588	881	116803											
CYP2B6	1555	broad.mit.edu	37	chr19	41515256	41515256	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaaccctggaccccagcGcccccaaggacctcatcgac	9	18	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41515256	A	A	41515256	3	1	129	1	0	0	0	0	1	0	0	0	4197	1087	38	4	796	4	CYP2B6	19	41515256	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	428861	41515256	17613727	882	116804											
AXL	558	broad.mit.edu	37	chr19	41745172	41745172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcctacactgctgctgGggatggaccctggagcctcc	14	14	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41745172	T	T	41745172	3	4	129	1	0	0	0	0	1	0	0	0	1243	1232	43	2	1272	2	AXL	19	41745172	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	229916	41745172	17383811	883	116805											
ATP1A3	478	broad.mit.edu	37	chr19	42492226	42492226	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccactctggggtggtaggCggtggcgtgagtgcgttagg	19	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42492226	T	T	42492226	2	4	129	1	0	0	0	0	0	0	0	1	1134	755	27	4		4	ATP1A3	19	42492226	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	747054	42492226	16636757	884	116806											
TMEM145	284339	broad.mit.edu	37	chr19	42819386	42819386	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctcatcttcatcctcatCttcttcctctcttgttactt	1	16	7	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42819386	G	G	42819386	3	3	129	1	0	0	0	0	1	0	0	0	16182	903	32	4	578	4	TMEM145	19	42819386	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	327160	42819386	16309597	885	116807											
TMEM145	284339	broad.mit.edu	37	chr19	42819403	42819403	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcttcttcctctcttgttActttggatgtgagtctggca	8	10	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42819403	T	T	42819403	3	4	129	1	0	0	0	0	1	0	0	0	16182	391	14	5	595	5	TMEM145	19	42819403	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	17	42819403	16309580	886	116808											
PSG6	5675	broad.mit.edu	37	chr19	43519186	43519186	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggacacaggctgggaataAaaatgttttcctgactcttc	10	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43519186	T	T	43519186	1	4	129	0	1	0	0	0	0	0	0	0	12765	29	1	5		5	PSG6	19	43519186	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	699783	43519186	15609797	887	116809											
PSG6	5675	broad.mit.edu	37	chr19	43520062	43520062	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcgctttaccctgggactgAccgggaggctctgacaattt	12	11	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520062	T	T	43520062	1	4	129	0	1	0	0	0	0	0	0	0	12765	290	10	5		5	PSG6	19	43520062	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	876	43520062	15608921	888	116810											
ZNF221	7638	broad.mit.edu	37	chr19	44470668	44470668	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacacaggagaaaaagcattCagatgtgatacatgtggcaa	10	7	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44470668	T	T	44470668	2	4	129	1	0	0	0	0	0	0	0	1	17901	825	29	4		4	ZNF221	19	44470668	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	950606	44470668	14658315	889	116811											
ZNF155	7711	broad.mit.edu	37	chr19	44501409	44501409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgggaagaactttagccGggcctcaagtattttgaatc	11	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44501409	T	T	44501409	3	4	129	1	0	0	0	0	1	0	0	0	17862	1116	39	1	1414	1	ZNF155	19	44501409	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	30741	44501409	14627574	890	116812											
ZNF233	353355	broad.mit.edu	37	chr19	44778728	44778728	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcacatcttcaagcccatCagagagtccatactggagag	8	12	4	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44778728	A	A	44778728	3	1	129	1	0	0	0	0	1	0	0	0	17912	827	29	3	1929	3	ZNF233	19	44778728	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	277319	44778728	14350255	891	116813											
VASP	7408	broad.mit.edu	37	chr19	46025595	46025595	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccttttctgtgtttgtttCaggaggcccacctgctcccc	8	16	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46025595	T	T	46025595	1	4	129	0	1	0	0	0	0	0	0	0	17255	841	29	4		4	VASP	19	46025595	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1246867	46025595	13103388	892	116814											
SLC8A2	6543	broad.mit.edu	37	chr19	47940832	47940832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgttctggggatgagagGgtgggggagaggtcactgcc	20	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47940832	T	T	47940832	1	4	129	0	1	0	0	0	0	0	0	0	14821	1247	43	2		2	SLC8A2	19	47940832	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1915237	47940832	11188151	893	116815											
LIG1	3978	broad.mit.edu	37	chr19	48665538	48665538	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttggagggggctccgtctCtctgctgctattggatgcct	13	11	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48665538	A	A	48665538	4	1	129	1	0	0	0	0	0	1	0	0	8853	922	32	3	2775	3	LIG1	19	48665538	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	724706	48665538	10463445	894	116816											
ZNF610	162963	broad.mit.edu	37	chr19	52868949	52868949	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctactctttcttcttttctAgggaggagctgtgtattggg	11	7	5	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52868949	T	T	52868949	5	4	129	1	0	0	0	0	0	0	1	0	18163	434	15	5	332	5	ZNF610	19	52868949	Splice_Site	SNP	A	TCGA-44-6777-01A-11D-1855-08	4203411	52868949	6260034	895	116817											
ZNF528	84436	broad.mit.edu	37	chr19	52918883	52918883	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcaaacctttcacaacatCaaagaattcatactggagag	5	9	4	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52918883	T	T	52918883	4	4	129	1	0	0	0	0	0	1	0	0	18096	827	29	4	792	4	ZNF528	19	52918883	Nonsense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	49934	52918883	6210100	896	116818											
VN1R2	317701	broad.mit.edu	37	chr19	53762367	53762367	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacaaagaaaggagatttgGgatattgttctgccccactt	9	8	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53762367	A	A	53762367	3	1	129	1	0	0	0	0	1	0	0	0	17306	1233	43	4	741	4	VN1R2	19	53762367	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	843484	53762367	5366616	897	116819											
PRKCG	5582	broad.mit.edu	37	chr19	54401214	54401214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttctcctttccacagcGggtgcggatgggcccctctt	10	14	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54401214	T	T	54401214	3	4	129	1	0	0	0	0	1	0	0	0	12618	1130	39	1	979	1	PRKCG	19	54401214	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	638847	54401214	4727769	898	116820											
LILRA3	11026	broad.mit.edu	37	chr19	54804218	54804218	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggatggatgagccctcGgtgctggcaggacagaggac	17	9	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54804218	T	T	54804218	1	4	129	0	1	0	0	0	0	0	0	0	8858	1131	39	1		1	LILRA3	19	54804218	5'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	403004	54804218	4324765	899	116821											
LILRA2	11027	broad.mit.edu	37	chr19	55086935	55086935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgtgagcccctcccacGggggccagtacagatgctac	12	16	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55086935	T	T	55086935	3	4	129	1	0	0	0	0	1	0	0	0	8857	1116	39	1	886	1	LILRA2	19	55086935	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	282717	55086935	4042048	900	116822											
NLRP7	199713	broad.mit.edu	37	chr19	55447692	55447692	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcatcagcatcatcgtgCgttcccactcgatgtgccct	8	15	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55447692	T	T	55447692	3	4	129	1	0	0	0	0	1	0	0	0	10577	768	27	4	900	4	NLRP7	19	55447692	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	360757	55447692	3681291	901	116823											
PTPRH	5794	broad.mit.edu	37	chr19	55709993	55709993	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctaatagggctgggttcaGaaccgactgtgtctcaccag	11	11	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55709993	T	T	55709993	1	4	129	0	1	0	0	0	0	0	0	0	12911	957	33	3		3	PTPRH	19	55709993	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	262301	55709993	3418990	902	116824											
NLRP8	126205	broad.mit.edu	37	chr19	56477761	56477761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaggtgagatttgagagGggggttagagtgggaaccgg	19	4	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56477761	T	T	56477761	1	4	129	0	1	0	0	0	0	0	0	0	10578	1247	43	2		2	NLRP8	19	56477761	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	767768	56477761	2651222	903	116825											
ZIM3	114026	broad.mit.edu	37	chr19	57646224	57646224	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggccatttcaacatggaAttctggggtgacaattccag	11	8	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57646224	T	T	57646224	1	4	129	0	1	0	0	0	0	0	0	0	17811	116	4	5		5	ZIM3	19	57646224	3'UTR	SNP	A	TCGA-44-6777-01A-11D-1855-08	1168463	57646224	1482759	904	116826											
ZNF547	284306	broad.mit.edu	37	chr19	57883008	57883008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaatatgtgcccaggatGgtaggggagatggaaacaca	14	5	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57883008	T	T	57883008	1	4	129	0	1	0	0	0	0	0	0	0	18106	1363	47	2		2	ZNF547	19	57883008	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	236784	57883008	1245975	905	116827											
ZNF606	80095	broad.mit.edu	37	chr19	58490898	58490898	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgttgagtaaggaaagagtCatacccaaagactttctccc	8	9	2	3	rs142065196	byFrequency	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58490898	T	T	58490898	3	4	129	1	0	0	0	0	1	0	0	0	18159	826	29	4	1232	4	ZNF606	19	58490898	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	607890	58490898	638085	906	116828											
ZNF274	10782	broad.mit.edu	37	chr19	58723010	58723010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacacagaggaccgagtacCgcgatgtgatgctggagacc	14	11	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58723010	A	A	58723010	3	1	129	1	0	0	0	0	1	0	0	0	17935	652	23	1	958	1	ZNF274	19	58723010	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	232112	58723010	405973	907	116829											
ZNF274	10782	broad.mit.edu	37	chr19	58723923	58723923	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtgactcacaagttaaaaGtatgaaacataattcacgtg	7	7	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58723923	A	A	58723923	3	1	129	1	0	0	0	0	1	0	0	0	17935	1029	36	4	1401	4	ZNF274	19	58723923	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	913	58723923	405060	908	116830											
PSMF1	9491	broad.mit.edu	37	chr20	1145042	1145042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacccttcctcaggcctccCgaaccgacttcctccaggcg	8	19	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1145042	A	A	1145042	3	1	129	1	0	0	0	0	1	0	0	0	12816	652	23	1	708	1	PSMF1	20	1145042	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08		1145042	61880478	909	116831											
CPXM1	56265	broad.mit.edu	37	chr20	2775109	2775112	+	Intron	DEL	AATT	-	-													gaagggcacgatcaggacccAattaatgatcttctgcttct							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2775112	-	-	2775109	6	5	129	0	1	1	0	1	0	0	0	0	3869	145	5	0		0	CPXM1	20	2775109	Intron	DEL	AATT	TCGA-44-6777-01A-11D-1855-08	1630067	2775109	60250411	910	116832											
SLC4A11	83959	broad.mit.edu	37	chr20	3208896	3208896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgcccactgcccaccCgcctgtaccggatggggatc	10	19	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3208896	A	A	3208896	1	1	129	0	1	0	0	0	0	0	0	0	14766	667	23	1		1	SLC4A11	20	3208896	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	433787	3208896	59816624	911	116833											
TRMT6	51605	broad.mit.edu	37	chr20	5930811	5930811	+	Intron	DEL	C	-	-													acgagggcggggaatggggaCcgagagagccaagaatggca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5930811	-	-	5930811	6	5	129	0	1	1	0	1	0	0	0	0	16693	522	18	0		0	TRMT6	20	5930811	Intron	DEL	C	TCGA-44-6777-01A-11D-1855-08	2721915	5930811	57094709	912	116834											
BMP2	650	broad.mit.edu	37	chr20	6759046	6759046	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaggaaacaatagcagtttCcatcaccgaattaatattta	5	7	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6759046	G	G	6759046	3	3	129	1	0	0	0	0	1	0	0	0	1465	854	30	4	507	4	BMP2	20	6759046	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	828235	6759046	56266474	913	116835											
PLCB1	23236	broad.mit.edu	37	chr20	8720984	8720984	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacacagcattattctcacCttccaggctatcactatatc	3	14	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8720984	T	T	8720984	1	4	129	0	1	0	0	0	0	0	0	0	12122	696	24	4		4	PLCB1	20	8720984	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1961938	8720984	54304536	914	116836											
ANKRD5	63926	broad.mit.edu	37	chr20	10030676	10030676	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgactctgtttggtacattGatgattcagagaaggtattt	10	4	2	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10030676	A	A	10030676	3	1	129	1	0	0	0	0	1	0	0	0	676	1290	45	4	1477	4	ANKRD5	20	10030676	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1309692	10030676	52994844	915	116837											
KIF16B	55614	broad.mit.edu	37	chr20	16486938	16486938	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcactgagatctctcaGggtagatatttttcaatttt	6	9	4	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16486938	A	A	16486938	1	1	129	0	1	0	0	0	0	0	0	0	8348	1015	35	4		4	KIF16B	20	16486938	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	6456262	16486938	46538582	916	116838											
C20orf26	26074	broad.mit.edu	37	chr20	20051546	20051546	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaatgacaaggaggagatCatggcccaggccaccttcct	11	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20051546	A	A	20051546	2	1	129	1	0	0	0	0	0	0	0	1	2128	816	29	3		3	C20orf26	20	20051546	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	3564608	20051546	42973974	917	116839											
ENTPD6	955	broad.mit.edu	37	chr20	25203651	25203651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgagcaggaaggtcggGgcggcagggggcgggggtgg	27	6	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25203651	T	T	25203651	1	4	129	0	1	0	0	0	0	0	0	0	5185	1247	43	2		2	ENTPD6	20	25203651	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	5152105	25203651	37821869	918	116840											
NINL	22981	broad.mit.edu	37	chr20	25470475	25470475	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactctgcccagcaggccctCccctctggaggcagactgtc	10	18	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25470475	A	A	25470475	1	1	129	0	1	0	0	0	0	0	0	0	10515	870	30	3		3	NINL	20	25470475	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	266824	25470475	37555045	919	116841											
ZNF337	26152	broad.mit.edu	37	chr20	25667060	25667060	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctgaggtcccatgactgtCttcctgctctccacggagaa	9	15	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25667060	A	A	25667060	1	1	129	0	1	0	0	0	0	0	0	0	17979	928	32	3		3	ZNF337	20	25667060	5'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	196585	25667060	37358460	920	116842											
DEFB121	245934	broad.mit.edu	37	chr20	29992946	29992946	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagaaagcagaaaggtgTgaaaggaagaggctaaagcc	14	4	0	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29992946	G	G	29992946	1	3	129	0	1	0	0	0	0	0	0	0	4447	1711	59	5		5	DEFB121	20	29992946	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	4325886	29992946	33032574	921	116843											
HCK	3055	broad.mit.edu	37	chr20	30672124	30672124	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagtggaccaggtagggcGgcctccaaggagcaacctct	13	13	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30672124	A	A	30672124	1	1	129	0	1	0	0	0	0	0	0	0	7060	1131	39	4		4	HCK	20	30672124	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	679178	30672124	32353396	922	116844											
DNMT3B	1789	broad.mit.edu	37	chr20	31387846	31387846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctttgctggattgaacGcatgtgatacagtcatgagg	12	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31387846	T	T	31387846	1	4	129	0	1	0	0	0	0	0	0	0	4717	1102	38	3		3	DNMT3B	20	31387846	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	715722	31387846	31637674	923	116845											
C20orf24	55969	broad.mit.edu	37	chr20	35240678	35240678	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatttctgaatttatccatCaccaaccatttcttcttgga	4	11	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35240678	T	T	35240678	1	4	129	0	1	0	0	0	0	0	0	0	2127	841	29	4		4	C20orf24	20	35240678	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	3852832	35240678	27784842	924	116846											
KIAA1755	85449	broad.mit.edu	37	chr20	36854000	36854000	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggttgatggatccatggGacagaagagtgaagagaaga	16	4	0	6			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36854000	T	T	36854000	1	4	129	0	1	0	0	0	0	0	0	0	8327	1189	41	3		3	KIAA1755	20	36854000	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1613322	36854000	26171520	925	116847											
BPI	671	broad.mit.edu	37	chr20	36938790	36938790	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacgtacctcctcacctGgagtggggataataacaaaa	9	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36938790	A	A	36938790	1	1	129	0	1	0	0	0	0	0	0	0	1499	1363	47	4		4	BPI	20	36938790	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	84790	36938790	26086730	926	116848											
WFDC3	140686	broad.mit.edu	37	chr20	44417430	44417430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattaaaggaggagggacCctaaaagagtaaagaagaag	12	3	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44417430	A	A	44417430	1	1	129	0	1	0	0	0	0	0	0	0	17480	638	22	2		2	WFDC3	20	44417430	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	7478640	44417430	18608090	927	116849											
SLC13A3	64849	broad.mit.edu	37	chr20	45195114	45195114	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaggatagatcacaacaatGacgaccataccccttcccag	6	13	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45195114	T	T	45195114	1	4	129	0	1	0	0	0	0	0	0	0	14506	1305	45	3		3	SLC13A3	20	45195114	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	777684	45195114	17830406	928	116850											
ZNFX1	57169	broad.mit.edu	37	chr20	47886335	47886335	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttacacatgtaacaaaccTgcacatgtacccctaaacct	3	13	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47886335	A	A	47886335	1	1	129	0	1	0	0	0	0	0	0	0	18334	1595	55	5		5	ZNFX1	20	47886335	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	2691221	47886335	15139185	929	116851											
SPATA2	9825	broad.mit.edu	37	chr20	48522885	48522885	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccccacatccgttgccacAggctccttccgaagactcaa	6	18	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48522885	G	G	48522885	2	3	129	1	0	0	0	0	0	0	0	1	15121	175	7	5		5	SPATA2	20	48522885	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	636550	48522885	14502635	930	116852											
ZFP64	55734	broad.mit.edu	37	chr20	50713850	50713850	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcattactgtgtccctagCgcttaattcacattcacgtc	6	12	3	0	rs147159936	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50713850	T	T	50713850	1	4	129	0	1	0	0	0	0	0	0	0	17778	783	27	4		4	ZFP64	20	50713850	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2190965	50713850	12311670	931	116853											
ZFP64	55734	broad.mit.edu	37	chr20	50776545	50776545	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaactgcaaacaacGggatgagcaaaggttccaac	8	9	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50776545	A	A	50776545	1	1	129	0	1	0	0	0	0	0	0	0	17778	1131	39	4		4	ZFP64	20	50776545	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	62695	50776545	12248975	932	116854											
CTCFL	140690	broad.mit.edu	37	chr20	56093924	56093924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacaaatgccatgttgcagtCgttacacttgtagggcctgg	12	9	0	0	rs143392924		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56093924	T	T	56093924	3	4	129	1	0	0	0	0	1	0	0	0	4035	884	31	4	1070	4	CTCFL	20	56093924	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	5317379	56093924	6931596	933	116855											
ZNF831	128611	broad.mit.edu	37	chr20	57769634	57769634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcggctcacgtggtgttGcctgagccgcagtgtccctc	14	15	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57769634	T	T	57769634	3	4	129	1	0	0	0	0	1	0	0	0	18314	1319	46	3	3562	3	ZNF831	20	57769634	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	1675710	57769634	5255886	934	116856											
SYCP2	10388	broad.mit.edu	37	chr20	58456602	58456602	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgtcaaaataaaaaagatTaaaaggaataaacataaaat	5	2	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58456602	C	C	58456602	1	2	129	0	1	0	0	0	0	0	0	0	15551	1769	61	5		5	SYCP2	20	58456602	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	686968	58456602	4568918	935	116857											
SLCO4A1	28231	broad.mit.edu	37	chr20	61299285	61299285	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtggagccgctgcctaccGcccctgtcctcccctggacc	11	19	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61299285	C	C	61299285	1	2	129	0	1	0	0	0	0	0	0	0	14843	1102	38	4		4	SLCO4A1	20	61299285	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2842683	61299285	1726235	936	116858											
TPTE	7179	broad.mit.edu	37	chr21	10998441	10998441	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgctgagccattttaattGtacatccctgttggtaggga	11	7	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10998441	A	A	10998441	1	1	129	0	1	0	0	0	0	0	0	0	16554	1392	48	4		4	TPTE	21	10998441	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08		10998441	37131454	937	116859											
LIPI	149998	broad.mit.edu	37	chr21	15561477	15561477	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacaattacattcatatcttCttcattcagcaaaatcctta	1	10	5	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15561477	G	G	15561477	3	3	129	1	0	0	0	0	1	0	0	0	8898	922	32	4	1108	4	LIPI	21	15561477	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4563036	15561477	32568418	938	116860											
TMPRSS15	5651	broad.mit.edu	37	chr21	19737657	19737657	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatattcatggcaaaaccTgtacaaggttattttatgaa	7	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19737657	A	A	19737657	1	1	129	0	1	0	0	0	0	0	0	0	16369	1595	55	5		5	TMPRSS15	21	19737657	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	4176180	19737657	28392238	939	116861											
NCAM2	4685	broad.mit.edu	37	chr21	22652835	22652835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtggtttagacatcatGcattaaaatcttagaaatca	6	7	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22652835	T	T	22652835	1	4	129	0	1	0	0	0	0	0	0	0	10298	1334	46	3		3	NCAM2	21	22652835	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	2915178	22652835	25477060	940	116862											
KRTAP19-7	337974	broad.mit.edu	37	chr21	31933457	31933457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatcccccatagcatgatGggtggcagcagctgtatctg	12	10	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31933457	T	T	31933457	3	4	129	1	0	0	0	0	1	0	0	0	8605	1348	47	2	42	2	KRTAP19-7	21	31933457	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	9280622	31933457	16196438	941	116863											
KRTAP19-7	337974	broad.mit.edu	37	chr21	31933508	31933508	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agccacagccatagcccagtCtgcggaagctgccacatcca	9	16	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31933508	A	A	31933508	3	1	129	1	0	0	0	0	1	0	0	0	8605	913	32	3	93	3	KRTAP19-7	21	31933508	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	51	31933508	16196387	942	116864											
SYNJ1	8867	broad.mit.edu	37	chr21	34017287	34017287	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taaatggttacctccaaattCctttctagtgggtgcaggac	9	9	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34017287	G	G	34017287	3	3	129	1	0	0	0	0	1	0	0	0	15571	864	30	4	1353	4	SYNJ1	21	34017287	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2083779	34017287	14112608	943	116865											
TTC3	7267	broad.mit.edu	37	chr21	38538450	38538450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacttattgggctcaatccCatttggtcacaggatactgt	8	10	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38538450	A	A	38538450	3	1	129	1	0	0	0	0	1	0	0	0	16823	594	21	2	4060	2	TTC3	21	38538450	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4521163	38538450	9591445	944	116866											
BRWD1	54014	broad.mit.edu	37	chr21	40590349	40590349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagaaaagaacagaaacCtcaattatgctagtattttt	7	5	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40590349	A	A	40590349	1	1	129	0	1	0	0	0	0	0	0	0	1534	696	24	2		2	BRWD1	21	40590349	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2051899	40590349	7539546	945	116867											
DSCAM	1826	broad.mit.edu	37	chr21	41496029	41496029	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactggaaagacccaggtagGtgggaaacaaaggaacgaaa	13	7	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41496029	A	A	41496029	1	1	129	0	1	0	0	0	0	0	0	0	4808	1276	44	4		4	DSCAM	21	41496029	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	905680	41496029	6633866	946	116868											
MX1	4599	broad.mit.edu	37	chr21	42813965	42813965	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgcgtgtgtgtgtgTgcgcgtgtgtgtgtgactat	18	4	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42813965	C	C	42813965	1	2	129	0	1	0	0	0	0	0	0	0	10091	1711	59	5		5	MX1	21	42813965	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1317936	42813965	5315930	947	116869											
UBASH3A	53347	broad.mit.edu	37	chr21	43833586	43833586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctaacctgaggctgagCaatttaactagagcctcctt	9	12	0	3	rs144816086		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43833586	A	A	43833586	3	1	129	1	0	0	0	0	1	0	0	0	16965	709	25	3	639	3	UBASH3A	21	43833586	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1019621	43833586	4296309	948	116870											
RRP1	8568	broad.mit.edu	37	chr21	45213249	45213249	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgaatcgcgagtggacGggcattgacaggctgcgcct	14	11	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45213249	T	T	45213249	2	4	129	1	0	0	0	0	0	0	0	1	13796	1103	39	1		1	RRP1	21	45213249	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1379663	45213249	2916646	949	116871											
PCBP3	54039	broad.mit.edu	37	chr21	47361589	47361589	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtctgttccaggctgaCgtccgaggtcaccgggatgg	14	11	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47361589	T	T	47361589	3	4	129	1	0	0	0	0	1	0	0	0	11596	536	19	4	1139	4	PCBP3	21	47361589	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2148340	47361589	768306	950	116872											
COL6A1	1291	broad.mit.edu	37	chr21	47422709	47422709	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagatctgcgtaggtgcAcgcggggccgcccgggcagt	16	14	1	1	rs113707678		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47422709	G	G	47422709	1	3	129	0	1	0	0	0	0	0	0	0	3731	174	6	5		5	COL6A1	21	47422709	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	61120	47422709	707186	951	116873											
C21orf56	84221	broad.mit.edu	37	chr21	47581788	47581788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcacagggacggaccgagCgccccgcaccctcctggccg	13	20	0	0	rs114359056	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47581788	A	A	47581788	1	1	129	0	1	0	0	0	0	0	0	0	2149	783	27	3		3	C21orf56	21	47581788	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	159079	47581788	548107	952	116874											
MCM3AP	8888	broad.mit.edu	37	chr21	47690550	47690550	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattttcatgaagatagatcTgataaataatagatttcact	5	4	3	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47690550	A	A	47690550	1	1	129	0	1	0	0	0	0	0	0	0	9481	1595	55	5		5	MCM3AP	21	47690550	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	108762	47690550	439345	953	116875											
CDC45	8318	broad.mit.edu	37	chr22	19506441	19506441	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtcctagggtgagttaCaggggttctgcaggggtggc	17	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19506441	T	T	19506441	1	4	129	0	1	0	0	0	0	0	0	0	3111	493	17	4		4	CDC45	22	19506441	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08		19506441	31798125	954	116876											
SCARF2	91179	broad.mit.edu	37	chr22	20786212	20786212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtccccgggatgacccaCtcaccaatcccacactcgtc	7	19	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20786212	A	A	20786212	1	1	129	0	1	0	0	0	0	0	0	0	13996	580	20	3		3	SCARF2	22	20786212	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1279771	20786212	30518354	955	116877											
PI4KA	5297	broad.mit.edu	37	chr22	21096392	21096392	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagaatctgtaaggagactGaggcttgagaaggtgagggg	17	3	1	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21096392	A	A	21096392	1	1	129	0	1	0	0	0	0	0	0	0	11968	1305	45	4		4	PI4KA	22	21096392	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	310180	21096392	30208174	956	116878											
SEZ6L	23544	broad.mit.edu	37	chr22	26690269	26690269	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttccagctctctgcagtGtgagcttctccaatcctgag	8	14	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26690269	A	A	26690269	3	1	129	1	0	0	0	0	1	0	0	0	14256	1377	48	4	857	4	SEZ6L	22	26690269	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5593877	26690269	24614297	957	116879											
PITPNB	23760	broad.mit.edu	37	chr22	28315195	28315195	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatcttcccggaacccccTcacagctgccgccgatacca	6	20	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28315195	A	A	28315195	1	1	129	0	1	0	0	0	0	0	0	0	12043	1566	54	5		5	PITPNB	22	28315195	5'UTR	SNP	T	TCGA-44-6777-01A-11D-1855-08	1624926	28315195	22989371	958	116880											
DRG1	4733	broad.mit.edu	37	chr22	31795830	31795830	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagattccgcgacttctctCagcgaggcccgtgttccgac	10	15	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31795830	T	T	31795830	1	4	129	0	1	0	0	0	0	0	0	0	4801	841	29	4		4	DRG1	22	31795830	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	3480635	31795830	19508736	959	116881											
SLC5A4	6527	broad.mit.edu	37	chr22	32633298	32633298	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgtctgtgtaaatcacCgaggccaagccccctagtga	12	11	2	1	rs142506993		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32633298	A	A	32633298	2	1	129	1	0	0	0	0	0	0	0	1	14781	639	23	1		1	SLC5A4	22	32633298	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	837468	32633298	18671268	960	116882											
CSF2RB	1439	broad.mit.edu	37	chr22	37329055	37329055	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcccttggcaggtgaccagTgagaggtagccactgggacg	17	10	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37329055	A	A	37329055	1	1	129	0	1	0	0	0	0	0	0	0	3969	1711	59	5		5	CSF2RB	22	37329055	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	4695757	37329055	13975511	961	116883											
DDX17	10521	broad.mit.edu	37	chr22	38890696	38890696	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggatgttgtggttggcacTcaactccagattgcctacgt	12	9	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38890696	A	A	38890696	3	1	129	1	0	0	0	0	1	0	0	0	4377	1551	54	5	1066	5	DDX17	22	38890696	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	1561641	38890696	12413870	962	116884											
TAB1	10454	broad.mit.edu	37	chr22	39811496	39811496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctccctctgccctctccCtcttccaggagtgagaacaa	8	17	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39811496	A	A	39811496	1	1	129	0	1	0	0	0	0	0	0	0	15614	696	24	2		2	TAB1	22	39811496	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	920800	39811496	11493070	963	116885											
TNRC6B	23112	broad.mit.edu	37	chr22	40711595	40711595	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtgaagacacaaagaggtCttcccaagagaggaagtcat	12	7	2	4	rs111358619		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40711595	A	A	40711595	1	1	129	0	1	0	0	0	0	0	0	0	16464	928	32	3		3	TNRC6B	22	40711595	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	900099	40711595	10592971	964	116886											
SMC1B	27127	broad.mit.edu	37	chr22	45795281	45795281	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaatttcatttctttaaTatataaagggaagaagttgt	7	2	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45795281	C	C	45795281	1	2	129	0	1	0	0	0	0	0	0	0	14896	1421	49	5		5	SMC1B	22	45795281	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	5083686	45795281	5509285	965	116887											
ZBED4	9889	broad.mit.edu	37	chr22	50280471	50280471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgtgatgctggctcccCgtcgaaagactctgccgcag	13	13	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50280471	A	A	50280471	3	1	129	1	0	0	0	0	1	0	0	0	17646	652	23	1	3163	1	ZBED4	22	50280471	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4485190	50280471	1024095	966	116888											
HDAC10	83933	broad.mit.edu	37	chr22	50685208	50685208	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaggtgttcatgttgtccaGagtccattcccagaactctc	8	12	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50685208	C	C	50685208	1	2	129	0	1	0	0	0	0	0	0	0	7072	957	33	4		4	HDAC10	22	50685208	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	404737	50685208	619358	967	116889											
SBF1	6305	broad.mit.edu	37	chr22	50906884	50906884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctggccctggccttccCcactccctgaggacaagaac	9	16	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50906884	A	A	50906884	3	1	129	1	0	0	0	0	1	0	0	0	13970	623	22	2	5779	2	SBF1	22	50906884	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	221676	50906884	397682	968	116890											
IL3RA	3563	broad.mit.edu	37	chrX	1460679	1460679	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtcctcctttggctcacGctgctcctgatcgccctgcc	9	17	1	1	rs138038721	byFrequency	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1460679	T	T	1460679	2	4	129	1	0	0	0	0	0	0	0	1	7765	1074	38	3		3	IL3RA	23	1460679	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08		1460679	153809881	969	116891											
NLGN4X	57502	broad.mit.edu	37	chrX	5821268	5821269	+	Frame_Shift_Ins	INS	-	A	A													accatgggccgaatctgcccINSagctgggcttcatttcgctt							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5821269	A	A	5821268	7	5	129	1	0	1	1	0	0	0	0	0	10559	595	21	0	1007	0	NLGN4X	23	5821268	Frame_Shift_Ins	INS	-	TCGA-44-6777-01A-11D-1855-08	4360589	5821268	149449292	970	116892											
CLCN4	1183	broad.mit.edu	37	chrX	10174905	10174905	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtattggataagattccgGcagttaattaaggagccaca	10	6	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10174905	A	A	10174905	1	1	129	0	1	0	0	0	0	0	0	0	3496	1218	42	4		4	CLCN4	23	10174905	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	4353637	10174905	145095655	971	116893											
PRPS2	5634	broad.mit.edu	37	chrX	12837810	12837810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggacaagtacgcagggCggtggggaaagcgttaggac	18	8	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12837810	A	A	12837810	1	1	129	0	1	0	0	0	0	0	0	0	12686	783	27	3		3	PRPS2	23	12837810	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2662905	12837810	142432750	972	116894											
ASB11	140456	broad.mit.edu	37	chrX	15311352	15311352	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaactgggccttggctcCgaactccagcagcacattga	9	15	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15311352	T	T	15311352	3	4	129	1	0	0	0	0	1	0	0	0	1019	661	23	4	527	4	ASB11	23	15311352	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	2473542	15311352	139959208	973	116895											
PPEF1	5475	broad.mit.edu	37	chrX	18802079	18802079	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctggctcccaatcggtacAatcgttgacaatgaaatcct	8	12	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18802079	T	T	18802079	2	4	129	1	0	0	0	0	0	0	0	1	12403	117	5	5		5	PPEF1	23	18802079	Silent	SNP	A	TCGA-44-6777-01A-11D-1855-08	3490727	18802079	136468481	974	116896											
GPR64	10149	broad.mit.edu	37	chrX	19020988	19020988	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgacaatgcagaatttaaGgatgtattttcggatgtaag	10	5	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19020988	T	T	19020988	3	4	129	1	0	0	0	0	1	0	0	0	6770	1000	35	2	871	2	GPR64	23	19020988	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	218909	19020988	136249572	975	116897											
PDHA1	5160	broad.mit.edu	37	chrX	19375862	19375862	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcatgggcagtgtggtttCcataggggtgggctttgaat	16	6	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19375862	T	T	19375862	1	4	129	0	1	0	0	0	0	0	0	0	11758	870	30	4		4	PDHA1	23	19375862	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	354874	19375862	135894698	976	116898											
MAGEB18	286514	broad.mit.edu	37	chrX	26157547	26157547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtcacttcaatgagatcCtcaagagagcctctgagcac	9	11	4	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26157547	A	A	26157547	3	1	129	1	0	0	0	0	1	0	0	0	9267	681	24	2	447	2	MAGEB18	23	26157547	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6781685	26157547	129113013	977	116899											
GK	2710	broad.mit.edu	37	chrX	30709248	30709248	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttggtctatagtgtggcttGatctaagaacccagtctacc	9	9	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30709248	C	C	30709248	3	2	129	1	0	0	0	0	1	0	0	0	6484	1290	45	4	364	4	GK	23	30709248	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	4551701	30709248	124561312	978	116900											
DMD	1756	broad.mit.edu	37	chrX	32482742	32482742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttagaatttctgaatcCccaagggcaggccattcctc	7	11	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32482742	A	A	32482742	2	1	129	1	0	0	0	0	0	0	0	1	4620	610	22	2		2	DMD	23	32482742	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	1773494	32482742	122787818	979	116901											
CXorf22	170063	broad.mit.edu	37	chrX	35969251	35969251	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcttattatcctgtagagtGattttgcaaggtcaacctga	8	7	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35969251	T	T	35969251	2	4	129	1	0	0	0	0	0	0	0	1	4135	1277	45	3		3	CXorf22	23	35969251	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	3486509	35969251	119301309	980	116902											
BCOR	54880	broad.mit.edu	37	chrX	39923699	39923699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgcgtttcctgtccaccCggagggtggggctgtgaggc	16	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39923699	A	A	39923699	3	1	129	1	0	0	0	0	1	0	0	0	1391	652	23	1	1911	1	BCOR	23	39923699	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3954448	39923699	115346861	981	116903											
DDX3X	1654	broad.mit.edu	37	chrX	41196624	41196624	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctcttaatgtagtatttGagcacatggggtgctaacca	9	7	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41196624	A	A	41196624	1	1	129	0	1	0	0	0	0	0	0	0	4391	1305	45	4		4	DDX3X	23	41196624	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1272925	41196624	114073936	982	116904			1	93		3	3	131	G		9.582081e-06
DDX3X	1654	broad.mit.edu	37	chrX	41196688	41196688	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctagacctgaactcttcaGataatcagagtggaggaagt	11	8	3	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41196688	A	A	41196688	3	1	129	1	0	0	0	0	1	0	0	0	4391	942	33	4	79	4	DDX3X	23	41196688	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	64	41196688	114073872	983	116905			1	93		3	3	131	G		9.582081e-06
DDX3X	1654	broad.mit.edu	37	chrX	41196754	41196754	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgggtttattgaatattaGagcttaacatcttaagattt	8	3	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41196754	C	C	41196754	1	2	129	0	1	0	0	0	0	0	0	0	4391	957	33	4		4	DDX3X	23	41196754	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	66	41196754	114073806	984	116906			1	93		3	3	131	G		9.582081e-06
RP2	6102	broad.mit.edu	37	chrX	46712938	46712938	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaagactacatgttcagtGgactgaaggatgaaacagta	10	6	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46712938	T	T	46712938	4	4	129	1	0	0	0	0	0	1	0	0	13645	1349	47	2	136	2	RP2	23	46712938	Nonsense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	5516184	46712938	108557622	985	116907											
ZNF182	7569	broad.mit.edu	37	chrX	47862055	47862055	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgtgtgacggccgagctGgaacaagtggagaagagtac	16	6	0	4			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47862055	A	A	47862055	1	1	129	0	1	0	0	0	0	0	0	0	17876	1363	47	4		4	ZNF182	23	47862055	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1149117	47862055	107408505	986	116908											
SSX3	10214	broad.mit.edu	37	chrX	48218288	48218288	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcaatccactaggctgctGagtgaccatcgcagcccttg	11	13	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48218288	T	T	48218288	1	4	129	0	1	0	0	0	0	0	0	0	15323	1305	45	3		3	SSX3	23	48218288	5'Flank	SNP	G	TCGA-44-6777-01A-11D-1855-08	356233	48218288	107052272	987	116909											
SSX3	10214	broad.mit.edu	37	chrX	48218828	48218828	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatggacttctggccaagcCcacccatggtgacatcatca	8	13	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48218828	G	G	48218828	1	3	129	0	1	0	0	0	0	0	0	0	15323	638	22	4		4	SSX3	23	48218828	5'Flank	SNP	C	TCGA-44-6777-01A-11D-1855-08	540	48218828	107051732	988	116910											
WDR13	64743	broad.mit.edu	37	chrX	48458017	48458017	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtcagcagcagaggcaagTcgggccatggccggggacac	16	12	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48458017	G	G	48458017	3	3	129	1	0	0	0	0	1	0	0	0	17402	1664	58	5	449	5	WDR13	23	48458017	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	239189	48458017	106812543	989	116911											
PLP2	5355	broad.mit.edu	37	chrX	49030876	49030876	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgaatgccaactctggtctCgtattggtacttagggcttt	10	9	2	0	rs149928919	by1000genomes	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49030876	A	A	49030876	1	1	129	0	1	0	0	0	0	0	0	0	12200	899	31	3		3	PLP2	23	49030876	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	572859	49030876	106239684	990	116912											
PAGE1	8712	broad.mit.edu	37	chrX	49453917	49453917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaccactgcactccagcCtggttgacagagcgagactc	11	14	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49453917	A	A	49453917	1	1	129	0	1	0	0	0	0	0	0	0	11483	696	24	2		2	PAGE1	23	49453917	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	423041	49453917	105816643	991	116913											
WNK3	65267	broad.mit.edu	37	chrX	54264888	54264888	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaggagcaattgctgatcTcatctcttctgtttccactg	7	11	4	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54264888	C	C	54264888	3	2	129	1	0	0	0	0	1	0	0	0	17506	1559	54	5	1525	5	WNK3	23	54264888	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	4810971	54264888	101005672	992	116914											
ALAS2	212	broad.mit.edu	37	chrX	55052311	55052311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtttggtccttgggtagcCaggatgggacagcgtccaat	14	9	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55052311	A	A	55052311	2	1	129	1	0	0	0	0	0	0	0	1	485	581	21	2		2	ALAS2	23	55052311	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	787423	55052311	100218249	993	116915											
DLG3	1741	broad.mit.edu	37	chrX	69717029	69717029	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctttcttgttggcttgcaGagggagtgacatccaacacc	10	11	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69717029	A	A	69717029	1	1	129	0	1	0	0	0	0	0	0	0	4596	956	33	4		4	DLG3	23	69717029	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	14664718	69717029	85553531	994	116916											
MED12	9968	broad.mit.edu	37	chrX	70356805	70356805	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgcaccacccaaaccCtggttctataacacacctta	3	18	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70356805	T	T	70356805	3	4	129	1	0	0	0	0	1	0	0	0	9521	681	24	4	5627	4	MED12	23	70356805	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	639776	70356805	84913755	995	116917											
ERCC6L	54821	broad.mit.edu	37	chrX	71426054	71426055	+	Frame_Shift_Ins	INS	-	T	T													ggatcctcttgcagtgcctcINSttgcttaggcccctcttgta							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71426055	T	T	71426054	7	5	129	1	0	1	1	0	0	0	0	0	5260	922	32	0	1193	0	ERCC6L	23	71426054	Frame_Shift_Ins	INS	-	TCGA-44-6777-01A-11D-1855-08	1069249	71426054	83844506	996	116918											
KIAA2022	340533	broad.mit.edu	37	chrX	73960592	73960592	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcttcatagaggccataGggccaccatgttggatacat	10	10	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73960592	T	T	73960592	3	4	129	1	0	0	0	0	1	0	0	0	8339	1000	35	2	758	2	KIAA2022	23	73960592	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	2534538	73960592	81309968	997	116919											
KIAA2022	340533	broad.mit.edu	37	chrX	73961412	73961412	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagagtggggccattgaatCaaagctaaagagccgaccat	12	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73961412	T	T	73961412	3	4	129	1	0	0	0	0	1	0	0	0	8339	826	29	4	1578	4	KIAA2022	23	73961412	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	820	73961412	81309148	998	116920											
UPRT	139596	broad.mit.edu	37	chrX	74513438	74513438	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatttttgttctagagcattCtggggctgaaagagattgta	11	4	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74513438	A	A	74513438	1	1	129	0	1	0	0	0	0	0	0	0	17140	928	32	3		3	UPRT	23	74513438	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	552026	74513438	80757122	999	116921											
ATRX	546	broad.mit.edu	37	chrX	76777597	76777597	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatgttggttcaaaacggtCaacaaataaaacaaaaattt	5	6	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76777597	G	G	76777597	1	3	129	0	1	0	0	0	0	0	0	0	1212	841	29	4		4	ATRX	23	76777597	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	2264159	76777597	78492963	1000	116922											
RPS6KA6	27330	broad.mit.edu	37	chrX	83319979	83319979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagtatgtttgttttacCttaacaacatgtgacacatc	5	7	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83319979	A	A	83319979	3	1	129	1	0	0	0	0	1	0	0	0	13766	695	24	2	133	2	RPS6KA6	23	83319979	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	6542382	83319979	71950581	1001	116923											
RPS6KA6	27330	broad.mit.edu	37	chrX	83362701	83362701	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttttccagaagcaggtttGaaaggaggttgaacttctct	12	6	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83362701	C	C	83362701	3	2	129	1	0	0	0	0	1	0	0	0	13766	1281	45	4	1236	4	RPS6KA6	23	83362701	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	42722	83362701	71907859	1002	116924											
HDX	139324	broad.mit.edu	37	chrX	83599336	83599336	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctacttcaggcccagcttCctctcctggtgtgagtgcag	10	14	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83599336	T	T	83599336	3	4	129	1	0	0	0	0	1	0	0	0	7093	864	30	4	510	4	HDX	23	83599336	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	236635	83599336	71671224	1003	116925											
HDX	139324	broad.mit.edu	37	chrX	83724224	83724224	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaataattgttttttcaccTaggagtagggaagcattttt	8	4	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83724224	A	A	83724224	2	1	129	1	0	0	0	0	0	0	0	1	7093	1509	53	5		5	HDX	23	83724224	Silent	SNP	T	TCGA-44-6777-01A-11D-1855-08	124888	83724224	71546336	1004	116926											
POF1B	79983	broad.mit.edu	37	chrX	84559397	84559397	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctcttccagcaagcttgtCagttcatgaagcttaaattg	7	9	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84559397	A	A	84559397	2	1	129	1	0	0	0	0	0	0	0	1	12277	813	29	3		3	POF1B	23	84559397	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	835173	84559397	70711163	1005	116927											
DACH2	117154	broad.mit.edu	37	chrX	85969469	85969469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattgtttttataagaaaacTaagaatgaatttaggtactt	6	2	0	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85969469	A	A	85969469	1	1	129	0	1	0	0	0	0	0	0	0	4254	1537	53	5		5	DACH2	23	85969469	Intron	SNP	T	TCGA-44-6777-01A-11D-1855-08	1410072	85969469	69301091	1006	116928											
PCDH11X	27328	broad.mit.edu	37	chrX	91369118	91369118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaccaccttctgtatctGctgagccaattctcgagtgg	9	12	3	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91369118	T	T	91369118	1	4	129	0	1	0	0	0	0	0	0	0	11602	1334	46	3		3	PCDH11X	23	91369118	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	5399649	91369118	63901442	1007	116929											
FAM133A	286499	broad.mit.edu	37	chrX	92965126	92965126	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaagaaacatagtaagaaGaagaaaaagaagtctggatc	9	5	1	5			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92965126	A	A	92965126	2	1	129	1	0	0	0	0	0	0	0	1	5489	933	33	4		4	FAM133A	23	92965126	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1596008	92965126	62305434	1008	116930											
SRPX2	27286	broad.mit.edu	37	chrX	99920554	99920554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacacttcggggccctgaGcctggctctcactttcccga	11	15	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99920554	T	T	99920554	3	4	129	1	0	0	0	0	1	0	0	0	15283	962	34	3	703	3	SRPX2	23	99920554	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	6955428	99920554	55350006	1009	116931											
NOX1	27035	broad.mit.edu	37	chrX	100106267	100106267	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcggtaaaaccggaggatCctttcacagatataaagaat	10	7	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100106267	T	T	100106267	2	4	129	1	0	0	0	0	0	0	0	1	10651	854	30	4		4	NOX1	23	100106267	Silent	SNP	C	TCGA-44-6777-01A-11D-1855-08	185713	100106267	55164293	1010	116932											
GLA	2717	broad.mit.edu	37	chrX	100653523	100653523	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatctgagttacttgctgAttccagctgaggccaaagtt	10	10	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100653523	T	T	100653523	3	4	129	1	0	0	0	0	1	0	0	0	6490	330	12	5	463	5	GLA	23	100653523	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	547256	100653523	54617037	1011	116933											
NXF5	55998	broad.mit.edu	37	chrX	101092985	101092985	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaggagaagcaggcctcatCgtggtaagcaccgaggagac	14	10	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101092985	A	A	101092985	1	1	129	0	1	0	0	0	0	0	0	0	10881	899	31	3		3	NXF5	23	101092985	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	439462	101092985	54177575	1012	116934											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105011541	105011541	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgcctctgacgctactcAacggacagctaccccttaat	6	16	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105011541	T	T	105011541	3	4	129	1	0	0	0	0	1	0	0	0	7732	130	5	5	1986	5	IL1RAPL2	23	105011541	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	3918556	105011541	50259019	1013	116935											
CHRDL1	91851	broad.mit.edu	37	chrX	109943926	109943926	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatatcaccatcagaatGttcccatgacagttctccat	6	11	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109943926	A	A	109943926	3	1	129	1	0	0	0	0	1	0	0	0	3404	1377	48	4	835	4	CHRDL1	23	109943926	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	4932385	109943926	45326634	1014	116936											
PAK3	5063	broad.mit.edu	37	chrX	110459767	110459767	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatgtggataggcgaggatCtgccaaggagcttttgcagg	17	6	1	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110459767	A	A	110459767	3	1	129	1	0	0	0	0	1	0	0	0	11496	913	32	3	1692	3	PAK3	23	110459767	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	515841	110459767	44810793	1015	116937											
CAPN6	827	broad.mit.edu	37	chrX	110494870	110494870	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactgaagacttccacaagtCtctctccaagacgaattttg	6	12	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110494870	A	A	110494870	3	1	129	1	0	0	0	0	1	0	0	0	2656	913	32	3	1157	3	CAPN6	23	110494870	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	35103	110494870	44775690	1016	116938											
ZCCHC16	340595	broad.mit.edu	37	chrX	111624720	111624720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaagttacttgtccaggCtgaaaacagattctttctgg	9	7	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111624720	A	A	111624720	1	1	129	0	1	0	0	0	0	0	0	0	17710	812	28	3		3	ZCCHC16	23	111624720	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	1129850	111624720	43645840	1017	116939											
HTR2C	3358	broad.mit.edu	37	chrX	114010327	114010327	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggggatatgagtataaccAccaatagagacaatatcatg	9	6	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114010327	T	T	114010327	1	4	129	0	1	0	0	0	0	0	0	0	7513	174	6	5		5	HTR2C	23	114010327	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	2385607	114010327	41260233	1018	116940											
HTR2C	3358	broad.mit.edu	37	chrX	114141131	114141131	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaagatgctataacaacccCcttcctttttcttcctttag	3	13	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114141131	G	G	114141131	1	3	129	0	1	0	0	0	0	0	0	0	7513	638	22	4		4	HTR2C	23	114141131	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	130804	114141131	41129429	1019	116941											
IL13RA2	3598	broad.mit.edu	37	chrX	114250206	114250206	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taacacctgatgatcactctGatacggcaaatgcatgcttt	7	10	2	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114250206	T	T	114250206	1	4	129	0	1	0	0	0	0	0	0	0	7700	1305	45	3		3	IL13RA2	23	114250206	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	109075	114250206	41020354	1020	116942											
KIAA1210	57481	broad.mit.edu	37	chrX	118221462	118221462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcccttaggattagcaCtccctgaatctgagaaaact	7	12	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118221462	A	A	118221462	3	1	129	1	0	0	0	0	1	0	0	0	8284	565	20	3	1414	3	KIAA1210	23	118221462	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	3971256	118221462	37049098	1021	116943											
CUL4B	8450	broad.mit.edu	37	chrX	119694494	119694494	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaacctgttggaaacatGaaaatagcggggtcaacagg	12	6	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119694494	T	T	119694494	1	4	129	0	1	0	0	0	0	0	0	0	4091	1305	45	3		3	CUL4B	23	119694494	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	1473032	119694494	35576066	1022	116944											
STAG2	10735	broad.mit.edu	37	chrX	123200293	123200293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctctacaaaggtttgtGgtggttcagtagtgttttta	12	5	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123200293	T	T	123200293	1	4	129	0	1	0	0	0	0	0	0	0	15361	1363	47	2		2	STAG2	23	123200293	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	3505799	123200293	32070267	1023	116945											
XPNPEP2	7512	broad.mit.edu	37	chrX	128890355	128890356	+	Intron	DNP	GG	TT	TT													tagaatgacttcctccagagGgactggcctggaagcccagg							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	128890356	TT	TT	128890355	1	4	129	0	1	0	0	0	0	0	0	0	17570	1247	43	2		2	XPNPEP2	23	128890355	Intron	DNP	GG	TCGA-44-6777-01A-11D-1855-08	5690062	128890355	26380205	1024	116946											
ZNF280C	55609	broad.mit.edu	37	chrX	129362946	129362946	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggattccaaagaaactttcaCttactagaaaactcatgggg	8	8	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129362946	G	G	129362946	1	3	129	0	1	0	0	0	0	0	0	0	17942	580	20	4		4	ZNF280C	23	129362946	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	472591	129362946	25907614	1025	116947											
ARHGAP36	158763	broad.mit.edu	37	chrX	130220361	130220361	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagtccagcccggaagCacttgattttatcagacgca	11	10	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130220361	G	G	130220361	3	3	129	1	0	0	0	0	1	0	0	0	885	710	25	4	1374	4	ARHGAP36	23	130220361	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	857415	130220361	25050199	1026	116948											
FRMD7	90167	broad.mit.edu	37	chrX	131231309	131231309	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataccttgtaagttcttccCgcagatgtccagggtccact	8	12	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131231309	A	A	131231309	3	1	129	1	0	0	0	0	1	0	0	0	6115	652	23	1	1911	1	FRMD7	23	131231309	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	1010948	131231309	24039251	1027	116949											
GPR112	139378	broad.mit.edu	37	chrX	135427235	135427235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggaaaagacttcacctgCatctactcatgttgggactg	10	9	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135427235	A	A	135427235	3	1	129	1	0	0	0	0	1	0	0	0	6694	710	25	3	1380	3	GPR112	23	135427235	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4195926	135427235	19843325	1028	116950											
GPR101	83550	broad.mit.edu	37	chrX	136113029	136113029	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccctccttggccttgacctCaccttcatgctggcggcgaa	10	16	2	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136113029	T	T	136113029	3	4	129	1	0	0	0	0	1	0	0	0	6687	835	29	4	724	4	GPR101	23	136113029	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	685794	136113029	19157531	1029	116951											
FGF13	2258	broad.mit.edu	37	chrX	137939851	137939852	+	Intron	DNP	CC	AT	AT													gtcatccagaactgtggtcaCcacataacaaaatgaactca							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	137939852	AT	AT	137939851	1	1	129	0	1	0	0	0	0	0	0	0	5899	522	18	3		3	FGF13	23	137939851	Intron	DNP	CC	TCGA-44-6777-01A-11D-1855-08	1826822	137939851	17330709	1030	116952											
F9	2158	broad.mit.edu	37	chrX	138644074	138644074	+	Missense_Mutation	SNP	T	A	A													agagattcatgtcaaggagaTagtgggggaccccatgttac							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138644074	A	A	138644074	3	1	129	1	0	0	0	0	1	0	0	0	5397	1403	49	5	1260	5	F9	23	138644074	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	704223	138644074	16626486	1031	116953	511	2									
F9	2158	broad.mit.edu	37	chrX	138644077	138644077	+	Missense_Mutation	SNP	T	G	G													gattcatgtcaaggagatagTgggggaccccatgttactga							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138644077	G	G	138644077	3	3	129	1	0	0	0	0	1	0	0	0	5397	1693	59	5	1263	5	F9	23	138644077	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	3	138644077	16626483	1032	116954	511	2									
SLITRK4	139065	broad.mit.edu	37	chrX	142716499	142716499	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagttcaaaatactcaCtcttcctttgttccacaaca	2	14	4	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142716499	G	G	142716499	3	3	129	1	0	0	0	0	1	0	0	0	14859	565	20	4	91	4	SLITRK4	23	142716499	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	4072422	142716499	12554061	1033	116955											
IDS	3423	broad.mit.edu	37	chrX	148564241	148564241	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctctcaccagctggaaggGagcacatcacatttgccatc	8	14	2	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148564241	A	A	148564241	1	1	129	0	1	0	0	0	0	0	0	0	7573	1189	41	4		4	IDS	23	148564241	3'UTR	SNP	G	TCGA-44-6777-01A-11D-1855-08	5847742	148564241	6706319	1034	116956											
MAGEA11	4110	broad.mit.edu	37	chrX	148794993	148794993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcactctgcctttggggtGtcagcaaggagtgggttgtg	15	9	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148794993	T	T	148794993	1	4	129	0	1	0	0	0	0	0	0	0	9253	1392	48	3		3	MAGEA11	23	148794993	Intron	SNP	G	TCGA-44-6777-01A-11D-1855-08	230752	148794993	6475567	1035	116957											
GPR50	9248	broad.mit.edu	37	chrX	150345268	150345268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagccagaatacccaccGgctctaatcatctttatgtt	5	15	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150345268	T	T	150345268	2	4	129	1	0	0	0	0	0	0	0	1	6762	1103	39	1		1	GPR50	23	150345268	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	1550275	150345268	4925292	1036	116958											
VMA21	203547	broad.mit.edu	37	chrX	150572049	150572049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttcagggacataagagCgtttggatatgactgtgcag	13	5	1	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150572049	A	A	150572049	1	1	129	0	1	0	0	0	0	0	0	0	17302	783	27	3		3	VMA21	23	150572049	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	226781	150572049	4698511	1037	116959											
PASD1	139135	broad.mit.edu	37	chrX	150769948	150769948	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcttattgctttactgtgAttcaccatagactgatctct	6	9	3	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150769948	T	T	150769948	1	4	129	0	1	0	0	0	0	0	0	0	11565	348	12	5		5	PASD1	23	150769948	Intron	SNP	A	TCGA-44-6777-01A-11D-1855-08	197899	150769948	4500612	1038	116960											
CNGA2	1260	broad.mit.edu	37	chrX	150911089	150911089	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatgtggtctacattgcGgacctcttcatccgattgcg	10	11	4	1	rs146197221	byFrequency	TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150911089	T	T	150911089	2	4	129	1	0	0	0	0	0	0	0	1	3629	1103	39	1		1	CNGA2	23	150911089	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	141141	150911089	4359471	1039	116961											
MAGEA5	4104	broad.mit.edu	37	chrX	151283261	151283261	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggtagttttcctgcaCcaaatcttgggtgagcagct	10	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151283261	A	A	151283261	1	1	129	0	1	0	0	0	0	0	0	0	9259	522	18	3		3	MAGEA5	23	151283261	3'UTR	SNP	C	TCGA-44-6777-01A-11D-1855-08	372172	151283261	3987299	1040	116962											
MAGEA12	4111	broad.mit.edu	37	chrX	151896287	151896287	+	RNA	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcggcggtcttttagggaGagccttttgttcctggaact	13	8	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151896287	T	T	151896287	1	4	129	0	1	0	0	0	0	0	0	0	9254	957	33	3		3	MAGEA12	23	151896287	RNA	SNP	G	TCGA-44-6777-01A-11D-1855-08	613026	151896287	3374273	1041	116963											
BGN	633	broad.mit.edu	37	chrX	152771462	152771462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctccctggtggagctcCgcatccacgacaaccgcatc	9	18	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152771462	A	A	152771462	3	1	129	1	0	0	0	0	1	0	0	0	1424	652	23	1	503	1	BGN	23	152771462	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	875175	152771462	2499098	1042	116964											
DUSP9	1852	broad.mit.edu	37	chrX	152915422	152915422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtctcccgggccctttcCtgccccatctagatgaggcc	11	17	2	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152915422	A	A	152915422	1	1	129	0	1	0	0	0	0	0	0	0	4872	696	24	2		2	DUSP9	23	152915422	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	143960	152915422	2355138	1043	116965											
PNCK	139728	broad.mit.edu	37	chrX	152938238	152938239	+	Intron	DNP	CC	AA	AA													agagtggagcggggagggccCcctgtgaaggagatggggag							TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152938239	AA	AA	152938238	1	1	129	0	1	0	0	0	0	0	0	0	12240	638	22	2		2	PNCK	23	152938238	Intron	DNP	CC	TCGA-44-6777-01A-11D-1855-08	22816	152938238	2332322	1044	116966											
PLXNB3	5365	broad.mit.edu	37	chrX	153039543	153039543	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcaagccaggccatgtccTggatgtggaggtgagggcca	15	11	1	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153039543	A	A	153039543	3	1	129	1	0	0	0	0	1	0	0	0	12220	1580	55	5	3701	5	PLXNB3	23	153039543	Missense_Mutation	SNP	T	TCGA-44-6777-01A-11D-1855-08	101305	153039543	2231017	1045	116967											
L1CAM	3897	broad.mit.edu	37	chrX	153137516	153137516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggacacccaggcccctcgCcacgagacaactggctgaca	10	17	0	2			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153137516	A	A	153137516	1	1	129	0	1	0	0	0	0	0	0	0	8660	754	26	3		3	L1CAM	23	153137516	Intron	SNP	C	TCGA-44-6777-01A-11D-1855-08	97973	153137516	2133044	1046	116968											
IRAK1	3654	broad.mit.edu	37	chrX	153284753	153284753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcggggcagtggtgcctgGggacggaagcggggcgggag	23	9	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153284753	A	A	153284753	3	1	129	1	0	0	0	0	1	0	0	0	7891	1232	43	4	1855	4	IRAK1	23	153284753	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	147237	153284753	1985807	1047	116969											
IRAK1	3654	broad.mit.edu	37	chrX	153284950	153284950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcacgaggtcggccacaCgggcgttgcggttgatccag	16	11	0	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153284950	A	A	153284950	3	1	129	1	0	0	0	0	1	0	0	0	7891	536	19	3	1954	3	IRAK1	23	153284950	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	197	153284950	1985610	1048	116970											
PLXNA3	55558	broad.mit.edu	37	chrX	153699904	153699904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacctggtggagcagtccCgcctccacgccagcgacttc	10	18	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153699904	A	A	153699904	3	1	129	1	0	0	0	0	1	0	0	0	12216	652	23	1	5565	1	PLXNA3	23	153699904	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	414954	153699904	1570656	1049	116971											
F8	2157	broad.mit.edu	37	chrX	154065930	154065930	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcagggcaatctggtgcAcccaactctgggggtgaatt	12	11	3	1			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154065930	T	T	154065930	3	4	129	1	0	0	0	0	1	0	0	0	5393	159	6	5	61	5	F8	23	154065930	Missense_Mutation	SNP	A	TCGA-44-6777-01A-11D-1855-08	366026	154065930	1204630	1050	116972											
F8	2157	broad.mit.edu	37	chrX	154157435	154157435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctctgttccctgaagaaGgctcccttccacgagatcca	7	16	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154157435	T	T	154157435	3	4	129	1	0	0	0	0	1	0	0	0	5393	1000	35	2	2505	2	F8	23	154157435	Missense_Mutation	SNP	G	TCGA-44-6777-01A-11D-1855-08	91505	154157435	1113125	1051	116973											
BRCC3	79184	broad.mit.edu	37	chrX	154344446	154344446	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaggaggagcaggatgcGtataggaggatccacaggta	16	7	0	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154344446	T	T	154344446	2	4	129	1	0	0	0	0	0	0	0	1	1509	1132	40	3		3	BRCC3	23	154344446	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	187011	154344446	926114	1052	116974											
RAB39B	116442	broad.mit.edu	37	chrX	154490325	154490325	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagtttctcggcctcgtgGcgagtcacttgcctctgtgt	12	13	3	0			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154490325	A	A	154490325	2	1	129	1	0	0	0	0	0	0	0	1	13038	1190	42	4		4	RAB39B	23	154490325	Silent	SNP	G	TCGA-44-6777-01A-11D-1855-08	145879	154490325	780235	1053	116975											
TMLHE	55217	broad.mit.edu	37	chrX	154736778	154736778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttccttcatgtttaagaCaatgaaacacttgaatgcta	6	8	1	3			TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154736778	A	A	154736778	3	1	129	1	0	0	0	0	1	0	0	0	16355	478	17	3	641	3	TMLHE	23	154736778	Missense_Mutation	SNP	C	TCGA-44-6777-01A-11D-1855-08	246453	154736778	533782	1054	116976											
CHD5	26038	broad.mit.edu	37	chr1	6194767	6194767	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagctgccatgatggccgGggaaacctaccacggcagcc	13	13	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6194767	C	C	6194767	1	2	130	0	1	0	0	0	0	0	0	0	3359	1247	43	4		4	CHD5	1	6194767	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08		6194767	243055854	1	116977											
RERE	473	broad.mit.edu	37	chr1	8715957	8715957	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttaaagtgtacaaagcgTatttatttcaccataatgcc	5	9	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8715957	C	C	8715957	1	2	130	0	1	0	0	0	0	0	0	0	13339	1653	57	5		5	RERE	1	8715957	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	2521190	8715957	240534664	2	116978											
CA6	765	broad.mit.edu	37	chr1	9005911	9005911	+	5'Flank	DEL	G	-	-													gcctttaaaagaagagcttcGccggaatcagtcttcattac							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9005911	-	-	9005911	6	5	130	0	1	1	0	1	0	0	0	0	2547	1102	38	0		0	CA6	1	9005911	5'Flank	DEL	G	TCGA-44-6778-01A-11D-1855-08	289954	9005911	240244710	3	116979											
AADACL3	126767	broad.mit.edu	37	chr1	12785399	12785399	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggatccgggctcagatcctGatctatgccattctccaagc	9	14	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12785399	T	T	12785399	2	4	130	1	0	0	0	0	0	0	0	1	12	1277	45	3		3	AADACL3	1	12785399	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	3779488	12785399	236465222	4	116980											
PADI1	29943	broad.mit.edu	37	chr1	17555382	17555382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcaggctgggggctggGggggcttgaggcaggctagg	24	7	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17555382	T	T	17555382	1	4	130	0	1	0	0	0	0	0	0	0	11471	1247	43	2		2	PADI1	1	17555382	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	4769983	17555382	231695239	5	116981											
PQLC2	54896	broad.mit.edu	37	chr1	19644153	19644153	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagccctgcctggccggGggcccctcctccacagccat	12	19	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19644153	T	T	19644153	1	4	130	0	1	0	0	0	0	0	0	0	12520	1247	43	2		2	PQLC2	1	19644153	5'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	2088771	19644153	229606468	6	116982											
MYOM3	127294	broad.mit.edu	37	chr1	24418670	24418670	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtcgactcaccgctcaAtggtgtaggcagtgatgggg	16	9	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24418670	G	G	24418670	3	3	130	1	0	0	0	0	1	0	0	0	10187	101	4	5	3195	5	MYOM3	1	24418670	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	4774517	24418670	224831951	7	116983											
RHD	6007	broad.mit.edu	37	chr1	25620791	25620791	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcgaggcatccccatgaAcataatcagtaacaacttgt	7	11	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25620791	T	T	25620791	1	4	130	0	1	0	0	0	0	0	0	0	13436	58	2	5		5	RHD	1	25620791	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1202121	25620791	223629830	8	116984											
CCDC21	64793	broad.mit.edu	37	chr1	26597677	26597677	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtattaggagggatacgtgaAttcttggctttgggctatct	13	5	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26597677	G	G	26597677	1	3	130	0	1	0	0	0	0	0	0	0	2823	116	4	5		5	CCDC21	1	26597677	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	976886	26597677	222652944	9	116985											
FAM76A	199870	broad.mit.edu	37	chr1	28086026	28086026	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctggttattctgccttGtttccctcagattacagagt	7	10	4	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28086026	A	A	28086026	1	1	130	0	1	0	0	0	0	0	0	0	5677	1392	48	4		4	FAM76A	1	28086026	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1488349	28086026	221164595	10	116986											
MECR	51102	broad.mit.edu	37	chr1	29557502	29557502	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccccgcccctgccccgCcgggtgaccactcccccttg	10	23	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29557502	A	A	29557502	1	1	130	0	1	0	0	0	0	0	0	0	9517	754	26	3		3	MECR	1	29557502	5'Flank	SNP	C	TCGA-44-6778-01A-11D-1855-08	1471476	29557502	219693119	11	116987											
FNDC5	252995	broad.mit.edu	37	chr1	33330312	33330312	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgctctggtgtgctggtttCtgatgcactcttggtttttt	12	7	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33330312	A	A	33330312	4	1	130	1	0	0	0	0	0	1	0	0	6030	922	32	3	133	3	FNDC5	1	33330312	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	3772810	33330312	215920309	12	116988											
RRAGC	64121	broad.mit.edu	37	chr1	39322631	39322631	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttgggtcaaaaaagtccaTttgcccaggaaaatcccata	9	9	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39322631	C	C	39322631	3	2	130	1	0	0	0	0	1	0	0	0	13785	1493	52	5	862	5	RRAGC	1	39322631	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	5992319	39322631	209927990	13	116989											
RIMKLA	284716	broad.mit.edu	37	chr1	42878237	42878237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaaattgcacatcagaCtggggctgttcactccccac	7	14	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42878237	A	A	42878237	1	1	130	0	1	0	0	0	0	0	0	0	13476	580	20	3		3	RIMKLA	1	42878237	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	3555606	42878237	206372384	14	116990											
CYP4A11	1579	broad.mit.edu	37	chr1	47403757	47403757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaatgaggacaggcacttGggaatgtctccacccatttc	10	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47403757	T	T	47403757	3	4	130	1	0	0	0	0	1	0	0	0	4216	1348	47	2	1355	2	CYP4A11	1	47403757	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4525520	47403757	201846864	15	116991											
TAL1	6886	broad.mit.edu	37	chr1	47685325	47685325	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaattctcaccccacctGccctgaagcccaccatccca	4	22	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47685325	T	T	47685325	1	4	130	0	1	0	0	0	0	0	0	0	15660	1334	46	3		3	TAL1	1	47685325	3'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	281568	47685325	201565296	16	116992											
AGBL4	84871	broad.mit.edu	37	chr1	50307914	50307914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcctgcccagagggcCctgtactatgatgtaatgct	12	11	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50307914	A	A	50307914	1	1	130	0	1	0	0	0	0	0	0	0	377	638	22	2		2	AGBL4	1	50307914	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2622589	50307914	198942707	17	116993											
ORC1L	4998	broad.mit.edu	37	chr1	52849096	52849096	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgccctagaacctaccagtCggctggacacccggttcatc	9	16	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52849096	T	T	52849096	3	4	130	1	0	0	0	0	1	0	0	0	11355	884	31	4	596	4	ORC1L	1	52849096	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2541182	52849096	196401525	18	116994											
C1orf177	163747	broad.mit.edu	37	chr1	55273638	55273638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaccatgtagcacccGggggctgctcagctctgggg	16	11	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55273638	A	A	55273638	3	1	130	1	0	0	0	0	1	0	0	0	2037	1116	39	4	448	4	C1orf177	1	55273638	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2424542	55273638	193976983	19	116995											
DHCR24	1718	broad.mit.edu	37	chr1	55340690	55340690	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaatgaagcacacctagaGgagccacctccctgacctca	10	14	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55340690	A	A	55340690	1	1	130	0	1	0	0	0	0	0	0	0	4516	1015	35	4		4	DHCR24	1	55340690	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	67052	55340690	193909931	20	116996											
DHCR24	1718	broad.mit.edu	37	chr1	55349179	55349179	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttctatgactgtgggcaTtggtcctgtccactctgcaa	9	11	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55349179	A	A	55349179	1	1	130	0	1	0	0	0	0	0	0	0	4516	1508	52	5		5	DHCR24	1	55349179	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	8489	55349179	193901442	21	116997											
INADL	10207	broad.mit.edu	37	chr1	62228508	62228508	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caattgaaattcatcttttaTattgttaaattttttcttta	2	4	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62228508	C	C	62228508	1	2	130	0	1	0	0	0	0	0	0	0	7801	1421	49	5		5	INADL	1	62228508	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	6879329	62228508	187022113	22	116998											
KANK4	163782	broad.mit.edu	37	chr1	62713182	62713183	+	Missense_Mutation	DNP	GG	TT	TT													gtcgcaggctgggtgtgccaGgagcagccgcaccaggtcca							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	62713183	TT	TT	62713182	3	4	130	1	0	0	0	0	1	0	0	0	8049	991	35	2	150	2	KANK4	1	62713182	Missense_Mutation	DNP	GG	TCGA-44-6778-01A-11D-1855-08	484674	62713182	186537439	23	116999											
LRRC7	57554	broad.mit.edu	37	chr1	70385235	70385235	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgctagtgaagccagtcAaggcggccctcgacctggcg	13	14	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70385235	C	C	70385235	1	2	130	0	1	0	0	0	0	0	0	0	9107	145	5	5		5	LRRC7	1	70385235	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	7672053	70385235	178865386	24	117000											
ACADM	34	broad.mit.edu	37	chr1	76190403	76190403	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgggaccagaggagtcCcgcgttcggggagtatgtca	18	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76190403	T	T	76190403	1	4	130	0	1	0	0	0	0	0	0	0	113	638	22	4		4	ACADM	1	76190403	5'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	5805168	76190403	173060218	25	117001											
AK5	26289	broad.mit.edu	37	chr1	77984490	77984490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgtaatgaatctgagCtgctggaactaagaaaccca	9	7	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77984490	A	A	77984490	1	1	130	0	1	0	0	0	0	0	0	0	443	812	28	3		3	AK5	1	77984490	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1794087	77984490	171266131	26	117002											
GIPC2	54810	broad.mit.edu	37	chr1	78546432	78546432	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggacaactaggactagaagAtttcatatttgcccatgtga	9	7	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78546432	G	G	78546432	3	3	130	1	0	0	0	0	1	0	0	0	6457	333	12	5	320	5	GIPC2	1	78546432	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	561942	78546432	170704189	27	117003											
COL24A1	255631	broad.mit.edu	37	chr1	86488363	86488363	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattcattgtagaagaataaTttctctatttttcttacttc	3	6	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86488363	A	A	86488363	1	1	130	0	1	0	0	0	0	0	0	0	3715	1508	52	5		5	COL24A1	1	86488363	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	7941931	86488363	162762258	28	117004											
COL24A1	255631	broad.mit.edu	37	chr1	86590523	86590523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatattaaaaaaaaaaaaaCttacgggaggtccagtgtct	8	5	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86590523	A	A	86590523	1	1	130	0	1	0	0	0	0	0	0	0	3715	580	20	3		3	COL24A1	1	86590523	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	102160	86590523	162660098	29	117005											
DNTTIP2	30836	broad.mit.edu	37	chr1	94337787	94337787	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccctgctgttttttgtcgTtctttctgaaattatgattt	6	8	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94337787	C	C	94337787	2	2	130	1	0	0	0	0	0	0	0	1	4722	1722	60	5		5	DNTTIP2	1	94337787	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	7747264	94337787	154912834	30	117006											
S1PR1	1901	broad.mit.edu	37	chr1	101705386	101705386	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgctggatgtgggctgCaaggtgaagacctgtgacat	14	9	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101705386	T	T	101705386	2	4	130	1	0	0	0	0	0	0	0	1	13904	718	25	4		4	S1PR1	1	101705386	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	7367599	101705386	147545235	31	117007											
COL11A1	1301	broad.mit.edu	37	chr1	103428162	103428162	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgagtatagttaaacaTaaattaaagttttgggccaa	11	3	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103428162	A	A	103428162	1	1	130	0	1	0	0	0	0	0	0	0	3699	1421	49	5		5	COL11A1	1	103428162	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1722776	103428162	145822459	32	117008											
VAV3	10451	broad.mit.edu	37	chr1	108116042	108116042	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatgactttgtatctgacActtcaaaggattctacaaac	5	9	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108116042	T	T	108116042	1	4	130	0	1	0	0	0	0	0	0	0	17260	174	6	5		5	VAV3	1	108116042	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	4687880	108116042	141134579	33	117009											
VAV3	10451	broad.mit.edu	37	chr1	108309106	108309106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacttggtacaagttctGgtcatttttatttacaatgg	7	5	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108309106	T	T	108309106	3	4	130	1	0	0	0	0	1	0	0	0	17260	1357	47	2	1864	2	VAV3	1	108309106	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	193064	108309106	140941515	34	117010											
SYT6	148281	broad.mit.edu	37	chr1	114680279	114680279	+	Frame_Shift_Del	DEL	G	-	-													cggtcagccagctcctcataGggcacagggaagtggaagtt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114680279	-	-	114680279	7	5	130	1	0	1	0	1	0	0	0	0	15597	987	35	0	643	0	SYT6	1	114680279	Frame_Shift_Del	DEL	G	TCGA-44-6778-01A-11D-1855-08	6371173	114680279	134570342	35	117011											
NBPF9	400818	broad.mit.edu	37	chr1	144839630	144839630	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaaggtggacctgtgagaGaggagtcatcctctttctct	13	8	3	2	rs146313248	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144839630	A	A	144839630	1	1	130	0	1	0	0	0	0	0	0	0	10294	957	33	4		4	NBPF9	1	144839630	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	30159351	144839630	104410991	36	117012											
PDE4DIP	9659	broad.mit.edu	37	chr1	144873862	144873862	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatgaagcttctgccccaTtggctgttgcatacctgaat	10	10	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144873862	A	A	144873862	1	1	130	0	1	0	0	0	0	0	0	0	11737	1508	52	5		5	PDE4DIP	1	144873862	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	34232	144873862	104376759	37	117013											
NBPF10	100132406	broad.mit.edu	37	chr1	145281267	145281267	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaaatgcaaagagttgaGgtcttctccacgcaagagct	10	8	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145281267	A	A	145281267	1	1	130	0	1	0	0	0	0	0	0	0	10287	1015	35	4		4	NBPF10	1	145281267	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	407405	145281267	103969354	38	117014											
NBPF10	100132406	broad.mit.edu	37	chr1	145304395	145304395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctaggactccctggggtcCaatccctctgtgtttaatct	9	12	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145304395	T	T	145304395	1	4	130	0	1	0	0	0	0	0	0	0	10287	609	21	4		4	NBPF10	1	145304395	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	23128	145304395	103946226	39	117015											
ANKRD35	148741	broad.mit.edu	37	chr1	145555761	145555761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggggatgtgggacgcgtgGctgccctggcctccaggaaa	19	10	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145555761	T	T	145555761	3	4	130	1	0	0	0	0	1	0	0	0	664	1203	42	3	115	3	ANKRD35	1	145555761	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	251366	145555761	103694860	40	117016											
GABPB2	126626	broad.mit.edu	37	chr1	151079676	151079676	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attggccagccatttattgtAactgtgcaagatggacagca	10	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151079676	C	C	151079676	2	2	130	1	0	0	0	0	0	0	0	1	6219	349	13	5		5	GABPB2	1	151079676	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	5523915	151079676	98170945	41	117017											
SEMA6C	10500	broad.mit.edu	37	chr1	151108132	151108132	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccccggatcgcccaccTggggtcagcaccttcagcac	11	18	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151108132	C	C	151108132	2	2	130	1	0	0	0	0	0	0	0	1	14154	1567	55	5		5	SEMA6C	1	151108132	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	28456	151108132	98142489	42	117018											
RPTN	126638	broad.mit.edu	37	chr1	152127701	152127701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggttttggtacccttcctgtCctggagtctgttgacttagc	11	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152127701	A	A	152127701	3	1	130	1	0	0	0	0	1	0	0	0	13775	855	30	3	484	3	RPTN	1	152127701	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1019569	152127701	97122920	43	117019											
RPTN	126638	broad.mit.edu	37	chr1	152129479	152129479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaatcagatgctgtcttGtgcatactaagatgtgtatc	9	7	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152129479	T	T	152129479	1	4	130	0	1	0	0	0	0	0	0	0	13775	1392	48	3		3	RPTN	1	152129479	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1778	152129479	97121142	44	117020											
RPTN	126638	broad.mit.edu	37	chr1	152129523	152129523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcatgccccaatccattcGgtgctgcacggaccttccta	8	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152129523	T	T	152129523	1	4	130	0	1	0	0	0	0	0	0	0	13775	1131	39	1		1	RPTN	1	152129523	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	44	152129523	97121098	45	117021											
S100A7L2	645922	broad.mit.edu	37	chr1	153409692	153409692	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggacaagtaatccatgtcgcTtttttcctgcatggagagaa	10	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153409692	A	A	153409692	3	1	130	1	0	0	0	0	1	0	0	0	13896	1609	56	5	161	5	S100A7L2	1	153409692	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1280169	153409692	95840929	46	117022											
ADAM15	8751	broad.mit.edu	37	chr1	155028998	155028998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattcagttcctcccaagtGtggtggcatttatgcactga	9	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155028998	T	T	155028998	1	4	130	0	1	0	0	0	0	0	0	0	237	1392	48	3		3	ADAM15	1	155028998	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1619306	155028998	94221623	47	117023											
ASH1L	55870	broad.mit.edu	37	chr1	155327419	155327419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttctcttctcttttgacCgtccagattttttgtgtgtg	7	9	2	2	rs142726363		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155327419	A	A	155327419	3	1	130	1	0	0	0	0	1	0	0	0	1045	652	23	1	2037	1	ASH1L	1	155327419	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	298421	155327419	93923202	48	117024											
KIAA0907	22889	broad.mit.edu	37	chr1	155904189	155904189	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcttctactcaaccaccCgccaactatccgactaccac	3	20	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155904189	A	A	155904189	5	1	130	1	0	0	0	0	0	0	1	0	8269	667	23	1		1	KIAA0907	1	155904189	Splice_Site	SNP	C	TCGA-44-6778-01A-11D-1855-08	576770	155904189	93346432	49	117025											
INSRR	3645	broad.mit.edu	37	chr1	156813052	156813052	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtggagggtcacaaagCgaggatgctgctctctgcca	16	9	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156813052	G	G	156813052	1	3	130	0	1	0	0	0	0	0	0	0	7844	783	27	4		4	INSRR	1	156813052	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	908863	156813052	92437569	50	117026											
INSRR	3645	broad.mit.edu	37	chr1	156814474	156814474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggcacaaaacggggctgGgacgggggtcccacgggcac	18	11	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156814474	T	T	156814474	1	4	130	0	1	0	0	0	0	0	0	0	7844	1247	43	2		2	INSRR	1	156814474	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1422	156814474	92436147	51	117027											
INSRR	3645	broad.mit.edu	37	chr1	156815556	156815556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctcggcctcaggatcccCgtcttcgccgtcgaagcgcg	11	17	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156815556	T	T	156815556	3	4	130	1	0	0	0	0	1	0	0	0	7844	652	23	4	1915	4	INSRR	1	156815556	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1082	156815556	92435065	52	117028											
PEAR1	375033	broad.mit.edu	37	chr1	156873709	156873709	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcgccggtcttgctgcaGgcctctgcaatgtcaccgcc	11	16	4	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156873709	T	T	156873709	5	4	130	1	0	0	0	0	0	0	1	0	11806	1014	35	2		2	PEAR1	1	156873709	Splice_Site	SNP	G	TCGA-44-6778-01A-11D-1855-08	58153	156873709	92376912	53	117029											
PEAR1	375033	broad.mit.edu	37	chr1	156878579	156878580	+	Nonsense_Mutation	DNP	CC	AA	AA													tgcctgcacggtggcgtctgCcaggctaccagcggcctctg							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	156878580	AA	AA	156878579	4	1	130	1	0	0	0	0	0	1	0	0	11806	747	26	3	1282	3	PEAR1	1	156878579	Nonsense_Mutation	DNP	CC	TCGA-44-6778-01A-11D-1855-08	4870	156878579	92372042	54	117030											
FCRL4	83417	broad.mit.edu	37	chr1	157567643	157567643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagcagcagaaaagaggGcttttgctcatggtgaggct	14	7	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157567643	T	T	157567643	1	4	130	0	1	0	0	0	0	0	0	0	5854	1218	42	3		3	FCRL4	1	157567643	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	689064	157567643	91682978	55	117031											
CD1E	913	broad.mit.edu	37	chr1	158325067	158325067	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcattctttccataatgatCtctcttccctgtccactctc	3	15	5	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158325067	T	T	158325067	1	4	130	0	1	0	0	0	0	0	0	0	3008	928	32	4		4	CD1E	1	158325067	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	757424	158325067	90925554	56	117032											
SPTA1	6708	broad.mit.edu	37	chr1	158604367	158604367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgtatctccacaatctcctCggacagccaaagcattcttt	5	13	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158604367	A	A	158604367	3	1	130	1	0	0	0	0	1	0	0	0	15234	884	31	3	1784	3	SPTA1	1	158604367	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	279300	158604367	90646254	57	117033											
SPTA1	6708	broad.mit.edu	37	chr1	158614124	158614124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaacttttgtcatctgaCctcagggaattctcacgtgc	9	10	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158614124	A	A	158614124	3	1	130	1	0	0	0	0	1	0	0	0	15234	506	18	3	3094	3	SPTA1	1	158614124	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	9757	158614124	90636497	58	117034											
OR6K2	81448	broad.mit.edu	37	chr1	158669915	158669915	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgggaggaagtcacagaaGatatgttcaaggtgattcga	13	5	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158669915	T	T	158669915	2	4	130	1	0	0	0	0	0	0	0	1	11296	932	33	3		3	OR6K2	1	158669915	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	55791	158669915	90580706	59	117035											
APCS	325	broad.mit.edu	37	chr1	159558125	159558125	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattggaagacacaaagttaCatccaaagttatcgaaaagt	7	7	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159558125	T	T	159558125	3	4	130	1	0	0	0	0	1	0	0	0	769	478	17	4	305	4	APCS	1	159558125	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	888210	159558125	89692496	60	117036											
ATP1A2	477	broad.mit.edu	37	chr1	160105515	160105515	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcccagcccactttagcTtcccttgaacacaaaatctt	5	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160105515	G	G	160105515	1	3	130	0	1	0	0	0	0	0	0	0	1133	1624	56	5		5	ATP1A2	1	160105515	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	547390	160105515	89145106	61	117037											
SLAMF1	6504	broad.mit.edu	37	chr1	160582310	160582310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacaggctctgtggcagCaacatatatggtggtgcaag	15	7	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160582310	A	A	160582310	3	1	130	1	0	0	0	0	1	0	0	0	14480	710	25	3	90	3	SLAMF1	1	160582310	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	476795	160582310	88668311	62	117038											
FCGR2A	2212	broad.mit.edu	37	chr1	161487775	161487775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctgcagccacctggacGtcaaatgattgccatcagaa	8	12	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161487775	T	T	161487775	3	4	130	1	0	0	0	0	1	0	0	0	5838	1145	40	3	817	3	FCGR2A	1	161487775	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	905465	161487775	87762846	63	117039											
FCGR2C	9103	broad.mit.edu	37	chr1	161565513	161565513	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcaaacaaagccacccGggccttagaaatagccttat	8	12	0	2	rs143473118	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161565513	A	A	161565513	1	1	130	0	1	0	0	0	0	0	0	0	5840	1131	39	4		4	FCGR2C	1	161565513	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	77738	161565513	87685108	64	117040											
FCGR2B	2213	broad.mit.edu	37	chr1	161641116	161641116	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggtgcttttttgtctgaGattcagggcctctcaagctc	10	10	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161641116	T	T	161641116	1	4	130	0	1	0	0	0	0	0	0	0	5839	957	33	3		3	FCGR2B	1	161641116	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	75603	161641116	87609505	65	117041											
OLFML2B	25903	broad.mit.edu	37	chr1	161967510	161967510	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccacttgccattcccataAagaactttgaccatctggtg	6	13	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161967510	T	T	161967510	1	4	130	0	1	0	0	0	0	0	0	0	10953	29	1	5		5	OLFML2B	1	161967510	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	326394	161967510	87283111	66	117042											
NOS1AP	9722	broad.mit.edu	37	chr1	162335086	162335086	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcttcttcttgaactgaAtgtggagggcatctctggtc	13	8	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162335086	G	G	162335086	1	3	130	0	1	0	0	0	0	0	0	0	10637	116	4	5		5	NOS1AP	1	162335086	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	367576	162335086	86915535	67	117043											
RGS4	5999	broad.mit.edu	37	chr1	163042541	163042541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatcttagatttcttgccCcaatttttttaccatggcat	6	9	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163042541	A	A	163042541	1	1	130	0	1	0	0	0	0	0	0	0	13416	638	22	2		2	RGS4	1	163042541	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	707455	163042541	86208080	68	117044											
FMO4	2329	broad.mit.edu	37	chr1	171300844	171300844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcccagaaggctttcagGgcaaacgcgtcttggtgatt	12	9	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171300844	T	T	171300844	3	4	130	1	0	0	0	0	1	0	0	0	6015	1232	43	2	564	2	FMO4	1	171300844	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	8258303	171300844	77949777	69	117045											
TNR	7143	broad.mit.edu	37	chr1	175324531	175324531	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgagcaatccttgtggAttgcttccttccccctccct	7	15	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175324531	T	T	175324531	1	4	130	0	1	0	0	0	0	0	0	0	16461	348	12	5		5	TNR	1	175324531	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	4023687	175324531	73926090	70	117046											
FAM20B	9917	broad.mit.edu	37	chr1	179013302	179013302	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggttataaagggacacAgctgaaagccttactgatac	11	7	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179013302	G	G	179013302	3	3	130	1	0	0	0	0	1	0	0	0	5585	188	7	5	322	5	FAM20B	1	179013302	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	3688771	179013302	70237319	71	117047											
CACNA1E	777	broad.mit.edu	37	chr1	181708384	181708384	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcattggtggcctttgcTctggcgtaagtgactctttt	13	9	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181708384	A	A	181708384	2	1	130	1	0	0	0	0	0	0	0	1	2568	1538	54	5		5	CACNA1E	1	181708384	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	2695082	181708384	67542237	72	117048											
CACNA1E	777	broad.mit.edu	37	chr1	181759781	181759781	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatagtcatggtccgtcaGgaaaatccattctagtagtt	8	8	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181759781	A	A	181759781	1	1	130	0	1	0	0	0	0	0	0	0	2568	1015	35	4		4	CACNA1E	1	181759781	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	51397	181759781	67490840	73	117049											
FAM129A	116496	broad.mit.edu	37	chr1	184764063	184764063	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccctaagtgtacccctaTaaccctttggcttttttcag	5	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184764063	C	C	184764063	1	2	130	0	1	0	0	0	0	0	0	0	5482	1421	49	5		5	FAM129A	1	184764063	3'UTR	SNP	T	TCGA-44-6778-01A-11D-1855-08	3004282	184764063	64486558	74	117050											
HMCN1	83872	broad.mit.edu	37	chr1	186062758	186062758	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaatggacttcctctgcctCtctcctcccatatccggtta	6	15	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186062758	T	T	186062758	3	4	130	1	0	0	0	0	1	0	0	0	7287	913	32	4	10415	4	HMCN1	1	186062758	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1298695	186062758	63187863	75	117051											
HMCN1	83872	broad.mit.edu	37	chr1	186143521	186143521	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgattccaagttgtaagctGgtatgatctcaaccacttgg	9	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186143521	C	C	186143521	1	2	130	0	1	0	0	0	0	0	0	0	7287	1363	47	4		4	HMCN1	1	186143521	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	80763	186143521	63107100	76	117052											
C1orf27	54953	broad.mit.edu	37	chr1	186367533	186367533	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtgaaatgcagagcttAtatccacagcagtaaaccca	8	10	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186367533	G	G	186367533	3	3	130	1	0	0	0	0	1	0	0	0	2058	449	16	5	903	5	C1orf27	1	186367533	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	224012	186367533	62883088	77	117053											
RGS21	431704	broad.mit.edu	37	chr1	192335066	192335066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagattaacattgacttcGgtaccagagacctcatctca	6	12	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192335066	T	T	192335066	3	4	130	1	0	0	0	0	1	0	0	0	13413	1116	39	1	285	1	RGS21	1	192335066	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	5967533	192335066	56915555	78	117054											
KCNT2	343450	broad.mit.edu	37	chr1	196205252	196205252	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcttatagaaaattacaGgaattactagtgaacagctt	7	6	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196205252	A	A	196205252	1	1	130	0	1	0	0	0	0	0	0	0	8162	1015	35	4		4	KCNT2	1	196205252	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3870186	196205252	53045369	79	117055											
CFHR5	81494	broad.mit.edu	37	chr1	196971786	196971786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatggcaatcattaccacGctgtgttggttagtagttta	10	7	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196971786	T	T	196971786	3	4	130	1	0	0	0	0	1	0	0	0	3318	1087	38	3	1352	3	CFHR5	1	196971786	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	766534	196971786	52278835	80	117056											
C1orf106	55765	broad.mit.edu	37	chr1	200876863	200876863	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cataactgatgctgtcctggGggagtgatcaggcctgagct	14	9	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200876863	C	C	200876863	1	2	130	0	1	0	0	0	0	0	0	0	2000	1247	43	4		4	C1orf106	1	200876863	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3905077	200876863	48373758	81	117057											
LGR6	59352	broad.mit.edu	37	chr1	202276367	202276367	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgttactgggggcaggtcAgatgggggtatgtgaggggg	21	4	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202276367	T	T	202276367	1	4	130	0	1	0	0	0	0	0	0	0	8830	203	7	5		5	LGR6	1	202276367	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1399504	202276367	46974254	82	117058											
MYBPH	4608	broad.mit.edu	37	chr1	203138465	203138465	+	Frame_Shift_Del	DEL	G	-	-													gccaggggctgggtgaatgaGggggcttctgagaagtctcg							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	203138465	-	-	203138465	7	5	130	1	0	1	0	1	0	0	0	0	10108	987	35	0	299	0	MYBPH	1	203138465	Frame_Shift_Del	DEL	G	TCGA-44-6778-01A-11D-1855-08	862098	203138465	46112156	83	117059											
TMEM81	388730	broad.mit.edu	37	chr1	205053467	205053467	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtctcggtaggcgttttgCcaccctcagccagcacccac	9	16	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205053467	T	T	205053467	1	4	130	0	1	0	0	0	0	0	0	0	16328	754	26	4		4	TMEM81	1	205053467	5'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	1915002	205053467	44197154	84	117060											
CD46	4179	broad.mit.edu	37	chr1	207941319	207941319	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattttagttgttatacatAgtgattctaaaattatttgc	5	5	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207941319	T	T	207941319	1	4	130	0	1	0	0	0	0	0	0	0	3048	435	15	5		5	CD46	1	207941319	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	2887852	207941319	41309302	85	117061											
HSD11B1	3290	broad.mit.edu	37	chr1	209879978	209879978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcaatctctcatttaaGccccccgttacttcagagac	7	13	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209879978	T	T	209879978	1	4	130	0	1	0	0	0	0	0	0	0	7442	986	34	3		3	HSD11B1	1	209879978	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1938659	209879978	39370643	86	117062											
SMYD2	56950	broad.mit.edu	37	chr1	214478535	214478535	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgtttttaaggaaagAaggattgtccaaatgtggaa	10	4	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214478535	G	G	214478535	3	3	130	1	0	0	0	0	1	0	0	0	14936	246	9	5	185	5	SMYD2	1	214478535	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	4598557	214478535	34772086	87	117063											
USH2A	7399	broad.mit.edu	37	chr1	216040409	216040409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacactcgcagtgagattggCtcctctctctggaagaccag	11	12	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216040409	A	A	216040409	3	1	130	1	0	0	0	0	1	0	0	0	17162	797	28	3	6939	3	USH2A	1	216040409	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1561874	216040409	33210212	88	117064											
MIA3	375056	broad.mit.edu	37	chr1	222800922	222800922	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttcttacaggagacGgattttgtttgttttgatgg	10	4	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222800922	T	T	222800922	2	4	130	1	0	0	0	0	0	0	0	1	9658	1103	39	1		1	MIA3	1	222800922	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	6760513	222800922	26449699	89	117065											
TMEM63A	9725	broad.mit.edu	37	chr1	226041531	226041531	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtctgtgagctgagagccGctcttggagggagaggaggg	20	6	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226041531	A	A	226041531	1	1	130	0	1	0	0	0	0	0	0	0	16313	1102	38	4		4	TMEM63A	1	226041531	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3240609	226041531	23209090	90	117066											
LEFTY2	7044	broad.mit.edu	37	chr1	226128567	226128567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgaccatgggaccgggGccagcagggagggagggtct	18	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226128567	T	T	226128567	1	4	130	0	1	0	0	0	0	0	0	0	8788	1218	42	3		3	LEFTY2	1	226128567	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	87036	226128567	23122054	91	117067											
NID1	4811	broad.mit.edu	37	chr1	236187256	236187256	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcctggcatgtccaccaGtatttatctcatccgtgctt	8	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236187256	A	A	236187256	1	1	130	0	1	0	0	0	0	0	0	0	10509	1044	36	4		4	NID1	1	236187256	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	10058689	236187256	13063365	92	117068											
ACTN2	88	broad.mit.edu	37	chr1	236911057	236911057	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggaacgcttactcagaaGaggagagaagccctagaggt	14	8	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236911057	T	T	236911057	3	4	130	1	0	0	0	0	1	0	0	0	205	933	33	3	1547	3	ACTN2	1	236911057	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	723801	236911057	12339564	93	117069											
RYR2	6262	broad.mit.edu	37	chr1	237713806	237713806	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatttctaaaagcccttgGtattgctttgacggctgcac	8	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237713806	A	A	237713806	1	1	130	0	1	0	0	0	0	0	0	0	13880	1276	44	4		4	RYR2	1	237713806	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	802749	237713806	11536815	94	117070											
RYR2	6262	broad.mit.edu	37	chr1	237729891	237729891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagccgaagtgtgcagcgGcaccggggaaaggttccgaa	16	10	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237729891	T	T	237729891	3	4	130	1	0	0	0	0	1	0	0	0	13880	1203	42	3	3349	3	RYR2	1	237729891	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	16085	237729891	11520730	95	117071											
RYR2	6262	broad.mit.edu	37	chr1	237777447	237777447	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgggaaccaccgggtggcCcatgccctgtgcagccatgt	13	14	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237777447	A	A	237777447	2	1	130	1	0	0	0	0	0	0	0	1	13880	610	22	2		2	RYR2	1	237777447	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	47556	237777447	11473174	96	117072											
RYR2	6262	broad.mit.edu	37	chr1	237780585	237780585	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctttttaatggtctcttaGatgtgcctactgcttcagta	8	8	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237780585	T	T	237780585	5	4	130	1	0	0	0	0	0	0	1	0	13880	956	33	3	5865	3	RYR2	1	237780585	Splice_Site	SNP	G	TCGA-44-6778-01A-11D-1855-08	3138	237780585	11470036	97	117073											
ZP4	57829	broad.mit.edu	37	chr1	238045794	238045794	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatactaacaaggctccaagGattaaggtcccagaaaggcc	10	10	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238045794	T	T	238045794	2	4	130	1	0	0	0	0	0	0	0	1	18347	1164	41	3		3	ZP4	1	238045794	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	265209	238045794	11204827	98	117074											
CHRM3	1131	broad.mit.edu	37	chr1	240072216	240072216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggtcaaggagaagaaaGcggcccagaccctcagtgcg	13	13	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240072216	T	T	240072216	3	4	130	1	0	0	0	0	1	0	0	0	3409	971	34	3	1467	3	CHRM3	1	240072216	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2026422	240072216	9178405	99	117075											
CHML	1122	broad.mit.edu	37	chr1	241798123	241798123	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaacactgcctgaaagCttggtattcatcaggatgtt	9	7	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241798123	T	T	241798123	3	4	130	1	0	0	0	0	1	0	0	0	3382	797	28	4	1028	4	CHML	1	241798123	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1725907	241798123	7452498	100	117076											
PLD5	200150	broad.mit.edu	37	chr1	242540233	242540233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatctgtggctatttctcGgctgagctcatccttttgga	9	10	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242540233	T	T	242540233	1	4	130	0	1	0	0	0	0	0	0	0	12144	1131	39	1		1	PLD5	1	242540233	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	742110	242540233	6710388	101	117077											
TRIM58	25893	broad.mit.edu	37	chr1	248039439	248039439	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagacacactgccaagaaAgggggaaaccacgccatctc	9	13	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248039439	G	G	248039439	3	3	130	1	0	0	0	0	1	0	0	0	16656	72	3	5	1131	5	TRIM58	1	248039439	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	5499206	248039439	1211182	102	117078											
OR2L13	284521	broad.mit.edu	37	chr1	248247267	248247267	+	Intron	DEL	G	-	-													accataggaggacaggatgaGggaaaaggggaccaggagca							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248247267	-	-	248247267	6	5	130	0	1	1	0	1	0	0	0	0	11100	1015	35	0		0	OR2L13	1	248247267	Intron	DEL	G	TCGA-44-6778-01A-11D-1855-08	207828	248247267	1003354	103	117079											
OR14C36	127066	broad.mit.edu	37	chr1	248513010	248513010	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattttttattcagaaaatGtgtaagaaacccgagaggct	9	5	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248513010	A	A	248513010	3	1	130	1	0	0	0	0	1	0	0	0	11040	1377	48	4	936	4	OR14C36	1	248513010	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	265743	248513010	737611	104	117080											
OR2T27	403239	broad.mit.edu	37	chr1	248813994	248813994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtccctgagggagagctgGctgagcaggaagtacatggg	17	7	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248813994	T	T	248813994	3	4	130	1	0	0	0	0	1	0	0	0	11115	1194	42	3	764	3	OR2T27	1	248813994	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	300984	248813994	436627	105	117081											
OR14I1	401994	broad.mit.edu	37	chr1	248845146	248845146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgccagtgtggacggctgCgtaggaaaagcagcttagcc	15	9	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248845146	A	A	248845146	3	1	130	1	0	0	0	0	1	0	0	0	11041	768	27	3	479	3	OR14I1	1	248845146	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	31152	248845146	405475	106	117082											
NBAS	51594	broad.mit.edu	37	chr2	15307192	15307192	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacacccagtgctgtgctgCgcggagggctgtactgaagg	15	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15307192	G	G	15307192	3	3	130	1	0	0	0	0	1	0	0	0	10280	768	27	4	23	4	NBAS	2	15307192	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08		15307192	227892181	107	117083											
PUM2	23369	broad.mit.edu	37	chr2	20478658	20478658	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccaactctcgctgggcaAtaacagaagtgatcacaata	7	12	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20478658	G	G	20478658	1	3	130	0	1	0	0	0	0	0	0	0	12934	116	4	5		5	PUM2	2	20478658	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	5171466	20478658	222720715	108	117084											
KIF3C	3797	broad.mit.edu	37	chr2	26203668	26203668	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgtgtccttggggtcCtcgttcacctggggcttgtt	14	10	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26203668	T	T	26203668	2	4	130	1	0	0	0	0	0	0	0	1	8372	680	24	4		4	KIF3C	2	26203668	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	5725010	26203668	216995705	109	117085											
LTBP1	4052	broad.mit.edu	37	chr2	33572548	33572548	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagtacagccccatgaCtgggcagtgccgctcccgga	12	15	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33572548	T	T	33572548	3	4	130	1	0	0	0	0	1	0	0	0	9160	565	20	4	4128	4	LTBP1	2	33572548	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	7368880	33572548	209626825	110	117086											
USP34	9736	broad.mit.edu	37	chr2	61697885	61697885	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacactgactgatcccgaccGgcgggggggaggggagagag	19	10	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61697885	A	A	61697885	1	1	130	0	1	0	0	0	0	0	0	0	17192	1131	39	4		4	USP34	2	61697885	5'Flank	SNP	G	TCGA-44-6778-01A-11D-1855-08	28125337	61697885	181501488	111	117087											
EHBP1	23301	broad.mit.edu	37	chr2	63217871	63217871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaaaacagtaagttggtgGacttgaagctgaagaagctc	11	6	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63217871	T	T	63217871	3	4	130	1	0	0	0	0	1	0	0	0	5015	1174	41	3	2908	3	EHBP1	2	63217871	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1519986	63217871	179981502	112	117088											
BMP10	27302	broad.mit.edu	37	chr2	69092865	69092865	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgggctctagctttgtGggcacacagcaggctttgga	15	8	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69092865	T	T	69092865	2	4	130	1	0	0	0	0	0	0	0	1	1463	1335	47	2		2	BMP10	2	69092865	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	5874994	69092865	174106508	113	117089											
DYSF	8291	broad.mit.edu	37	chr2	71838610	71838610	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagatcctggcatggggcCtgcggaacatgaagagttac	13	9	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71838610	T	T	71838610	2	4	130	1	0	0	0	0	0	0	0	1	4899	680	24	4		4	DYSF	2	71838610	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	2745745	71838610	171360763	114	117090											
SLC4A5	57835	broad.mit.edu	37	chr2	74535261	74535261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatccattctcctattgaaGgacatcttggtggcctccag	8	12	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74535261	A	A	74535261	1	1	130	0	1	0	0	0	0	0	0	0	14771	1015	35	4		4	SLC4A5	2	74535261	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2696651	74535261	168664112	115	117091											
LRRTM4	80059	broad.mit.edu	37	chr2	77745781	77745781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggaatctgaaaccctgggGaagggcttggtgtttcaaag	14	7	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77745781	T	T	77745781	3	4	130	1	0	0	0	0	1	0	0	0	9129	1174	41	3	572	3	LRRTM4	2	77745781	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3210520	77745781	165453592	116	117092											
REG3A	5068	broad.mit.edu	37	chr2	79385697	79385697	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagataaacgtgttcatcctCattcccaaggaactctcctg	6	12	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79385697	A	A	79385697	1	1	130	0	1	0	0	0	0	0	0	0	13320	841	29	3		3	REG3A	2	79385697	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1639916	79385697	163813676	117	117093											
CTNNA2	1496	broad.mit.edu	37	chr2	80782801	80782801	+	Intron	SNP	A	T	T													gtaaagtcatctaaatgtgtAtgtgtcctctccatagaaaa							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80782801	T	T	80782801	1	4	130	0	1	0	0	0	0	0	0	0	4047	464	16	5		5	CTNNA2	2	80782801	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1397104	80782801	162416572	118	117094	512	2									
CTNNA2	1496	broad.mit.edu	37	chr2	80782803	80782803	+	Intron	SNP	G	T	T													aaagtcatctaaatgtgtatGtgtcctctccatagaaaatc							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80782803	T	T	80782803	1	4	130	0	1	0	0	0	0	0	0	0	4047	1392	48	3		3	CTNNA2	2	80782803	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2	80782803	162416570	119	117095	512	2									
CTNNA2	1496	broad.mit.edu	37	chr2	80831172	80831172	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccgtcattaagtggatttCtaattatgttgtatatgttg	8	5	2	0	rs13408126		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80831172	A	A	80831172	1	1	130	0	1	0	0	0	0	0	0	0	4047	928	32	3		3	CTNNA2	2	80831172	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	48369	80831172	162368201	120	117096											
ZNF514	84874	broad.mit.edu	37	chr2	95818312	95818312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagttgagggctcctgcCaagtgatctcatcttctgaa	10	11	3	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95818312	A	A	95818312	1	1	130	0	1	0	0	0	0	0	0	0	18086	609	21	2		2	ZNF514	2	95818312	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	14987140	95818312	147381061	121	117097											
SNRNP200	23020	broad.mit.edu	37	chr2	96949250	96949250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttaacctaaccccaaccCccagacgccaggccccacct	4	22	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96949250	A	A	96949250	1	1	130	0	1	0	0	0	0	0	0	0	14966	638	22	2		2	SNRNP200	2	96949250	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1130938	96949250	146250123	122	117098											
NCK2	8440	broad.mit.edu	37	chr2	106509345	106509345	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagtgtttgagcaatgggTggtttggatttagacgcaca	13	7	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106509345	G	G	106509345	1	3	130	0	1	0	0	0	0	0	0	0	10315	1711	59	5		5	NCK2	2	106509345	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	9560095	106509345	136690028	123	117099											
C2orf40	84417	broad.mit.edu	37	chr2	106690424	106690424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgaagcgccagaagcgGcagctgtgggaccggactcg	16	12	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106690424	T	T	106690424	2	4	130	1	0	0	0	0	0	0	0	1	2187	1190	42	3		3	C2orf40	2	106690424	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	181079	106690424	136508949	124	117100											
FOXD4L1	200350	broad.mit.edu	37	chr2	114257837	114257837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatcatgcaaggggtcagggGagcgggtacaggggctgcgc	19	8	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114257837	T	T	114257837	3	4	130	1	0	0	0	0	1	0	0	0	6058	1174	41	3	1006	3	FOXD4L1	2	114257837	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	7567413	114257837	128941536	125	117101											
EPB41L5	57669	broad.mit.edu	37	chr2	120831672	120831672	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accttttttttttttaaatgAcagttggttcaccctattgt	5	7	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120831672	T	T	120831672	1	4	130	0	1	0	0	0	0	0	0	0	5199	290	10	5		5	EPB41L5	2	120831672	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	6573835	120831672	122367701	126	117102											
CNTNAP5	129684	broad.mit.edu	37	chr2	125547729	125547729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaaaaaggtaccttaggCgctcctgtttctcctgagtg	10	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125547729	A	A	125547729	1	1	130	0	1	0	0	0	0	0	0	0	3682	783	27	3		3	CNTNAP5	2	125547729	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4716057	125547729	117651644	127	117103											
MYO7B	4648	broad.mit.edu	37	chr2	128324349	128324349	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtctttgccatcgccaaCaactgctacttcagcatgaa	6	13	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128324349	G	G	128324349	3	3	130	1	0	0	0	0	1	0	0	0	10177	477	17	4	431	4	MYO7B	2	128324349	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2776620	128324349	114875024	128	117104											
PLEKHB2	55041	broad.mit.edu	37	chr2	131950929	131950929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaatcagcaacagccaaGcttgaaacttgatatatatt	5	9	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131950929	T	T	131950929	1	4	130	0	1	0	0	0	0	0	0	0	12160	986	34	3		3	PLEKHB2	2	131950929	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3626580	131950929	111248444	129	117105											
UBXN4	23190	broad.mit.edu	37	chr2	136533787	136533787	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagagaatatatagaggtgAagattgtgactttaattttc	9	2	0	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136533787	T	T	136533787	1	4	130	0	1	0	0	0	0	0	0	0	17042	261	9	5		5	UBXN4	2	136533787	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	4582858	136533787	106665586	130	117106											
SPOPL	339745	broad.mit.edu	37	chr2	139326393	139326393	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaaatgatttgaatacatAggtaaaaagtgttcaaatat	7	3	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139326393	T	T	139326393	1	4	130	0	1	0	0	0	0	0	0	0	15203	435	15	5		5	SPOPL	2	139326393	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	2792606	139326393	103872980	131	117107											
LRP1B	53353	broad.mit.edu	37	chr2	141299376	141299376	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtcattggcaacagctatGattcccattggctgatgtgg	12	8	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141299376	T	T	141299376	2	4	130	1	0	0	0	0	0	0	0	1	9042	1280	45	3		3	LRP1B	2	141299376	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1972983	141299376	101899997	132	117108											
GALNT13	114805	broad.mit.edu	37	chr2	155265415	155265415	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attattcagttaacaatagaTagtaacatgagaaggatttg	8	3	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155265415	A	A	155265415	1	1	130	0	1	0	0	0	0	0	0	0	6273	1421	49	5		5	GALNT13	2	155265415	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	13966039	155265415	87933958	133	117109											
PKP4	8502	broad.mit.edu	37	chr2	159389749	159389749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggcaaccacagacccGccaggaagctgcctccactg	13	15	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159389749	T	T	159389749	3	4	130	1	0	0	0	0	1	0	0	0	12082	1087	38	3	55	3	PKP4	2	159389749	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4124334	159389749	83809624	134	117110											
PKP4	8502	broad.mit.edu	37	chr2	159459563	159459566	+	Intron	DEL	TTTC	-	-													ataaataaatgttccattttTttctttctttttctttagct							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159459566	-	-	159459563	6	5	130	0	1	1	0	1	0	0	0	0	12082	1856	64	0		0	PKP4	2	159459563	Intron	DEL	TTTC	TCGA-44-6778-01A-11D-1855-08	69814	159459563	83739810	135	117111											
LY75	4065	broad.mit.edu	37	chr2	160711128	160711128	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgagttaatgttcaaaaCtataaatagtaattcagatt	6	4	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160711128	T	T	160711128	1	4	130	0	1	0	0	0	0	0	0	0	9187	580	20	4		4	LY75	2	160711128	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1251565	160711128	82488245	136	117112											
SCN2A	6326	broad.mit.edu	37	chr2	166179948	166179948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagcgctgtggactgcaatGgtgtggtctccctggtcggg	16	9	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166179948	T	T	166179948	3	4	130	1	0	0	0	0	1	0	0	0	14029	1348	47	2	2092	2	SCN2A	2	166179948	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	5468820	166179948	77019425	137	117113											
SCN1A	6323	broad.mit.edu	37	chr2	166856103	166856103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctatgcttgaatatttaCctgtcacactttttcccaaa	4	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166856103	A	A	166856103	1	1	130	0	1	0	0	0	0	0	0	0	14027	522	18	3		3	SCN1A	2	166856103	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	676155	166856103	76343270	138	117114											
XIRP2	129446	broad.mit.edu	37	chr2	168104772	168104772	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtgagtgcccccttccAcctccatctccacctcctcc	5	20	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168104772	C	C	168104772	2	2	130	1	0	0	0	0	0	0	0	1	17557	146	6	5		5	XIRP2	2	168104772	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	1248669	168104772	75094601	139	117115											
ABCB11	8647	broad.mit.edu	37	chr2	169830481	169830481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtatgcccccaaagcaAcgtccactgaaatccatcaa	5	13	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169830481	T	T	169830481	1	4	130	0	1	0	0	0	0	0	0	0	42	58	2	5		5	ABCB11	2	169830481	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1725709	169830481	73368892	140	117116											
UBR3	130507	broad.mit.edu	37	chr2	170933697	170933697	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatggcagttttttcagttGgtgtgtagtcttcaataaat	9	4	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170933697	A	A	170933697	1	1	130	0	1	0	0	0	0	0	0	0	17029	1363	47	4		4	UBR3	2	170933697	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1103216	170933697	72265676	141	117117											
RAPGEF4	11069	broad.mit.edu	37	chr2	173882136	173882136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcccttatggcacttgCtgtggttgtttttacagcac	9	10	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173882136	A	A	173882136	1	1	130	0	1	0	0	0	0	0	0	0	13154	812	28	3		3	RAPGEF4	2	173882136	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2948439	173882136	69317237	142	117118											
HOXD11	3237	broad.mit.edu	37	chr2	176973884	176973884	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttgagagctccaggaagCgccctcaccccagccccact	8	17	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176973884	A	A	176973884	1	1	130	0	1	0	0	0	0	0	0	0	7387	783	27	3		3	HOXD11	2	176973884	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	3091748	176973884	66225489	143	117119											
TTC30B	150737	broad.mit.edu	37	chr2	178417116	178417116	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaccctggcagatcgccctCgctgtacttgatagcagctt	11	13	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178417116	A	A	178417116	4	1	130	1	0	0	0	0	0	1	0	0	16825	893	31	3	1625	3	TTC30B	2	178417116	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1443232	178417116	64782257	144	117120											
TTN	7273	broad.mit.edu	37	chr2	179418668	179418668	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcagcagctttgtagaattCagatggttcagaaaatggac	10	6	3	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179418668	T	T	179418668	3	4	130	1	0	0	0	0	1	0	0	0	16861	835	29	4	18929	4	TTN	2	179418668	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1001552	179418668	63780705	145	117121											
TTN	7273	broad.mit.edu	37	chr2	179490203	179490203	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttagataaaaataaaTggaaatagagctttccaagt	6	4	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179490203	C	C	179490203	1	2	130	0	1	0	0	0	0	0	0	0	16861	1479	51	5		5	TTN	2	179490203	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	71535	179490203	63709170	146	117122											
TTN	7273	broad.mit.edu	37	chr2	179535937	179535937	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggtttagaatgaactcttGaagtattttggagcactact	9	5	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179535937	C	C	179535937	1	2	130	0	1	0	0	0	0	0	0	0	16861	1305	45	4		4	TTN	2	179535937	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	45734	179535937	63663436	147	117123											
TTN	7273	broad.mit.edu	37	chr2	179595957	179595957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaagggatagatgtgGgttgtgcattaccctgctga	12	6	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179595957	T	T	179595957	1	4	130	0	1	0	0	0	0	0	0	0	16861	1247	43	2		2	TTN	2	179595957	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	60020	179595957	63603416	148	117124											
CCDC141	285025	broad.mit.edu	37	chr2	179701637	179701637	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaccatgtcagtgtaggctCtggaaatcctgttacttcaa	8	11	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179701637	A	A	179701637	4	1	130	1	0	0	0	0	0	1	0	0	2801	922	32	3	47	3	CCDC141	2	179701637	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	105680	179701637	63497736	149	117125											
NEUROD1	4760	broad.mit.edu	37	chr2	182543136	182543136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggatctccgacagagccCagatgtagttcttggccaag	12	11	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182543136	A	A	182543136	3	1	130	1	0	0	0	0	1	0	0	0	10443	595	21	2	622	2	NEUROD1	2	182543136	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2841499	182543136	60656237	150	117126											
ZNF804A	91752	broad.mit.edu	37	chr2	185802212	185802212	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccactgtaaaaagaacAcaatacttttaaatggacaa	4	7	0	1	rs34197025		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185802212	T	T	185802212	3	4	130	1	0	0	0	0	1	0	0	0	18299	159	6	5	2103	5	ZNF804A	2	185802212	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	3259076	185802212	57397161	151	117127											
PMS1	5378	broad.mit.edu	37	chr2	190717275	190717275	+	Intron	DEL	G	-	-													tatggctttttagaccttaaGatgaaaatctgttttttaat							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	190717275	-	-	190717275	6	5	130	0	1	1	0	1	0	0	0	0	12237	957	33	0		0	PMS1	2	190717275	Intron	DEL	G	TCGA-44-6778-01A-11D-1855-08	4915063	190717275	52482098	152	117128											
TMEFF2	23671	broad.mit.edu	37	chr2	192821012	192821012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgcatattgatagaatGctcacacttcccatgcatgc	6	13	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192821012	T	T	192821012	3	4	130	1	0	0	0	0	1	0	0	0	16137	1319	46	3	298	3	TMEFF2	2	192821012	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2103737	192821012	50378361	153	117129											
DNAH7	56171	broad.mit.edu	37	chr2	196681688	196681688	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctatttcttttaactgcCtggaataaaacaaaattttc	3	8	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196681688	A	A	196681688	5	1	130	1	0	0	0	0	0	0	1	0	4646	695	24	2	2709	2	DNAH7	2	196681688	Splice_Site	SNP	C	TCGA-44-6778-01A-11D-1855-08	3860676	196681688	46517685	154	117130											
MARS2	92935	broad.mit.edu	37	chr2	198571261	198571261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctactttctccttcggcagGgcgtccccaactgggactgt	11	14	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198571261	T	T	198571261	3	4	130	1	0	0	0	0	1	0	0	0	9409	1232	43	2	1134	2	MARS2	2	198571261	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1889573	198571261	44628112	155	117131											
TRAK2	66008	broad.mit.edu	37	chr2	202249026	202249026	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattatttattaataatataGcatttatcaagtaccttttg	3	5	1	0	rs138236009	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202249026	A	A	202249026	1	1	130	0	1	0	0	0	0	0	0	0	16574	986	34	4		4	TRAK2	2	202249026	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3677765	202249026	40950347	156	117132											
NDUFS1	4719	broad.mit.edu	37	chr2	206992579	206992579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccaggaggtgtcactGctaccttagtctgctgagct	11	12	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206992579	T	T	206992579	3	4	130	1	0	0	0	0	1	0	0	0	10386	1319	46	3	373	3	NDUFS1	2	206992579	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4743553	206992579	36206794	157	117133											
ERBB4	2066	broad.mit.edu	37	chr2	212522553	212522553	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactagtgggaccgttacaCctgcaggcaattacagaaca	10	10	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212522553	A	A	212522553	2	1	130	1	0	0	0	0	0	0	0	1	5251	521	18	3		3	ERBB4	2	212522553	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	5529974	212522553	30676820	158	117134											
ABCA12	26154	broad.mit.edu	37	chr2	215855534	215855534	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgatcagagctgcaatgttGgtgttgttgaagaagacact	12	7	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215855534	T	T	215855534	2	4	130	1	0	0	0	0	0	0	0	1	30	1335	47	2		2	ABCA12	2	215855534	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	3332981	215855534	27343839	159	117135											
ATIC	471	broad.mit.edu	37	chr2	216200872	216200872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaattcatgtttgaagcGgtaatttgctcttttattct	8	6	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216200872	T	T	216200872	1	4	130	0	1	0	0	0	0	0	0	0	1109	1131	39	1		1	ATIC	2	216200872	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	345338	216200872	26998501	160	117136											
DNPEP	23549	broad.mit.edu	37	chr2	220247996	220247996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctgctggaactcagccCaccagcaccttgggtgtgca	11	14	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220247996	A	A	220247996	1	1	130	0	1	0	0	0	0	0	0	0	4719	609	21	2		2	DNPEP	2	220247996	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4047124	220247996	22951377	161	117137											
SP140	11262	broad.mit.edu	37	chr2	231090572	231090572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagctcatggcccagcagGgccagcaggggcagatggca	15	13	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231090572	T	T	231090572	3	4	130	1	0	0	0	0	1	0	0	0	15076	1232	43	2	15	2	SP140	2	231090572	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	10842576	231090572	12108801	162	117138											
SP140L	93349	broad.mit.edu	37	chr2	231193449	231193449	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttatttacttgtttatagAtcctgccaaattgtcttttt	5	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231193449	T	T	231193449	1	4	130	0	1	0	0	0	0	0	0	0	15077	348	12	5		5	SP140L	2	231193449	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	102877	231193449	12005924	163	117139											
NMUR1	10316	broad.mit.edu	37	chr2	232389863	232389863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgctgcctgtggtcatcCtgctgaggctgtgggagctg	18	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232389863	A	A	232389863	3	1	130	1	0	0	0	0	1	0	0	0	10601	681	24	2	112	2	NMUR1	2	232389863	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1196414	232389863	10809510	164	117140											
UGT1A6	54578	broad.mit.edu	37	chr2	234621632	234621632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagctgtcggtggcttctGctgagatggccacaggactc	14	11	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234621632	T	T	234621632	1	4	130	0	1	0	0	0	0	0	0	0	17075	1334	46	3		3	UGT1A6	2	234621632	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2231769	234621632	8577741	165	117141											
UGT1A5	54579	broad.mit.edu	37	chr2	234663865	234663865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtacgccttcttgataccCtcggacgaggcctaccgggg	13	14	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234663865	A	A	234663865	1	1	130	0	1	0	0	0	0	0	0	0	17074	696	24	2		2	UGT1A5	2	234663865	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	42233	234663865	8535508	166	117142											
SH3BP4	23677	broad.mit.edu	37	chr2	235949599	235949599	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgcaaaggaagtgattgcGatcaaggactattgccccac	10	9	1	1	rs148142077	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235949599	A	A	235949599	2	1	130	1	0	0	0	0	0	0	0	1	14359	1045	37	4		4	SH3BP4	2	235949599	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1285734	235949599	7249774	167	117143											
CHL1	10752	broad.mit.edu	37	chr3	443200	443200	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcctcactggtatcaaaAcatttgagcaatgctgttct	7	9	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	443200	G	G	443200	1	3	130	0	1	0	0	0	0	0	0	0	3380	58	2	5		5	CHL1	3	443200	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08		443200	197579230	168	117144											
IL5RA	3568	broad.mit.edu	37	chr3	3143466	3143466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcacacttgctgaaaagcCtttgtggaggatggttacac	11	10	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3143466	A	A	3143466	3	1	130	1	0	0	0	0	1	0	0	0	7770	681	24	2	1043	2	IL5RA	3	3143466	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2700266	3143466	194878964	169	117145											
EDEM1	9695	broad.mit.edu	37	chr3	5243547	5243547	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttgttatacatggcccatGacctggcggtgcggctcctc	12	12	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5243547	T	T	5243547	3	4	130	1	0	0	0	0	1	0	0	0	4951	1290	45	3	810	3	EDEM1	3	5243547	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2100081	5243547	192778883	170	117146											
HRH1	3269	broad.mit.edu	37	chr3	11301761	11301761	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacatggggccagcgagatAtcagaggatcagatgttagg	14	7	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11301761	G	G	11301761	3	3	130	1	0	0	0	0	1	0	0	0	7422	439	16	5	1040	5	HRH1	3	11301761	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	6058214	11301761	186720669	171	117147											
FGD5	152273	broad.mit.edu	37	chr3	14949224	14949224	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagccaggaagggtgagTgccgccaccatgggtagggg	17	11	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14949224	A	A	14949224	1	1	130	0	1	0	0	0	0	0	0	0	5893	1711	59	5		5	FGD5	3	14949224	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	3647463	14949224	183073206	172	117148											
KCNH8	131096	broad.mit.edu	37	chr3	19492611	19492611	+	Intron	DEL	C	-	-													aatcagttagactacacttaCcccaatttgatttcctcctt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19492611	-	-	19492611	6	5	130	0	1	1	0	1	0	0	0	0	8108	522	18	0		0	KCNH8	3	19492611	Intron	DEL	C	TCGA-44-6778-01A-11D-1855-08	4543387	19492611	178529819	173	117149											
RBMS3	27303	broad.mit.edu	37	chr3	29938770	29938770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttggtggaaaaacgtgcGggtggaaatatgtctttccc	14	6	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29938770	T	T	29938770	1	4	130	0	1	0	0	0	0	0	0	0	13258	1131	39	1		1	RBMS3	3	29938770	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	10446159	29938770	168083660	174	117150											
ZNF619	285267	broad.mit.edu	37	chr3	40523250	40523250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgctggggtcctgtgtGgctctccttgccagtacaaa	11	14	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40523250	T	T	40523250	1	4	130	0	1	0	0	0	0	0	0	0	18170	1363	47	2		2	ZNF619	3	40523250	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	10584480	40523250	157499180	175	117151											
KIF15	56992	broad.mit.edu	37	chr3	44872272	44872272	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcagtcagcaagtatttAttgaattatcttgtgttaat	6	6	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44872272	C	C	44872272	1	2	130	0	1	0	0	0	0	0	0	0	8347	464	16	5		5	KIF15	3	44872272	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	4349022	44872272	153150158	176	117152											
IP6K2	51447	broad.mit.edu	37	chr3	48726009	48726009	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accagcagggagcttgagtaGaagcggtaggactcctgtcg	15	9	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48726009	A	A	48726009	2	1	130	1	0	0	0	0	0	0	0	1	7859	933	33	4		4	IP6K2	3	48726009	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	3853737	48726009	149296421	177	117153											
MST1R	4486	broad.mit.edu	37	chr3	49935561	49935561	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgggttccctcaggcacCagaccagaagggtgaaggta	14	9	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49935561	A	A	49935561	2	1	130	1	0	0	0	0	0	0	0	1	9985	581	21	2		2	MST1R	3	49935561	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1209552	49935561	148086869	178	117154											
C3orf18	51161	broad.mit.edu	37	chr3	50598513	50598513	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctggggatgggggcaaaGgctgctggggacagggcagg	22	7	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50598513	A	A	50598513	1	1	130	0	1	0	0	0	0	0	0	0	2233	1015	35	4		4	C3orf18	3	50598513	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	662952	50598513	147423917	179	117155											
DOCK3	1795	broad.mit.edu	37	chr3	51274918	51274918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttactctccatatctccCaggtgttcatcatcaacctg	6	14	5	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51274918	A	A	51274918	1	1	130	0	1	0	0	0	0	0	0	0	4728	609	21	2		2	DOCK3	3	51274918	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	676405	51274918	146747512	180	117156											
ITIH4	3700	broad.mit.edu	37	chr3	52854232	52854232	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggccctggccagcaacctCacagggctggtgccctggac	14	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52854232	A	A	52854232	1	1	130	0	1	0	0	0	0	0	0	0	7976	841	29	3		3	ITIH4	3	52854232	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1579314	52854232	145168198	181	117157											
CACNA2D3	55799	broad.mit.edu	37	chr3	54676191	54676191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagtatctgcagtcagGccatcatgctcataactgat	9	9	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54676191	T	T	54676191	3	4	130	1	0	0	0	0	1	0	0	0	2576	1203	42	3	1132	3	CACNA2D3	3	54676191	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1821959	54676191	143346239	182	117158											
MAGI1	9223	broad.mit.edu	37	chr3	65344700	65344700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaatgaggaaattaggcCacagcacagaaacacctagt	9	9	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65344700	A	A	65344700	1	1	130	0	1	0	0	0	0	0	0	0	9282	609	21	2		2	MAGI1	3	65344700	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	10668509	65344700	132677730	183	117159											
CNTN3	5067	broad.mit.edu	37	chr3	74384005	74384005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctggcagggcaatatgaCgctttcaccaacagaaacat	8	11	1	2	rs142080236		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74384005	A	A	74384005	3	1	130	1	0	0	0	0	1	0	0	0	3674	536	19	3	1581	3	CNTN3	3	74384005	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	9039305	74384005	123638425	184	117160											
ROBO2	6092	broad.mit.edu	37	chr3	77614096	77614096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaatgaaatttctgttcGcgtttcagccaatcagtgag	8	7	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77614096	T	T	77614096	1	4	130	0	1	0	0	0	0	0	0	0	13625	1102	38	3		3	ROBO2	3	77614096	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3230091	77614096	120408334	185	117161											
EPHA6	285220	broad.mit.edu	37	chr3	96963122	96963122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagctattacagtgaccacgGatcaagatggtaagttccac	9	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96963122	T	T	96963122	3	4	130	1	0	0	0	0	1	0	0	0	5213	1174	41	3	1615	3	EPHA6	3	96963122	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	19349026	96963122	101059308	186	117162											
OR5H6	79295	broad.mit.edu	37	chr3	97983303	97983303	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatcaccatcatggggaatCttggtctaattgttctcatc	7	10	6	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97983303	A	A	97983303	3	1	130	1	0	0	0	0	1	0	0	0	11257	913	32	3	177	3	OR5H6	3	97983303	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1020181	97983303	100039127	187	117163											
OR5K2	402135	broad.mit.edu	37	chr3	98216577	98216577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttatcctcacaggatttaCagatcaccctgagctgaaga	8	10	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98216577	A	A	98216577	3	1	130	1	0	0	0	0	1	0	0	0	11261	478	17	3	55	3	OR5K2	3	98216577	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	233274	98216577	99805853	188	117164											
CPOX	1371	broad.mit.edu	37	chr3	98307565	98307565	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactttacctaccattttttAaatttggggtagagatctgg	8	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98307565	C	C	98307565	3	2	130	1	0	0	0	0	1	0	0	0	3853	359	13	5	435	5	CPOX	3	98307565	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	90988	98307565	99714865	189	117165											
KIAA2018	205717	broad.mit.edu	37	chr3	113376161	113376161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctttatgtagagatgGttactatgaaggtgagatac	12	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113376161	T	T	113376161	3	4	130	1	0	0	0	0	1	0	0	0	8338	1252	44	3	2373	3	KIAA2018	3	113376161	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	15068596	113376161	84646269	190	117166											
QTRTD1	79691	broad.mit.edu	37	chr3	113804843	113804843	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaataatctgagctttaAttatttatatttggatataa	5	2	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113804843	T	T	113804843	1	4	130	0	1	0	0	0	0	0	0	0	12994	116	4	5		5	QTRTD1	3	113804843	3'UTR	SNP	A	TCGA-44-6778-01A-11D-1855-08	428682	113804843	84217587	191	117167											
C3orf15	89876	broad.mit.edu	37	chr3	119445029	119445029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgcaggtcggggtctcCcagcaggacaagctgaggtg	15	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119445029	A	A	119445029	3	1	130	1	0	0	0	0	1	0	0	0	2231	623	22	2	720	2	C3orf15	3	119445029	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	5640186	119445029	78577401	192	117168											
STXBP5L	9515	broad.mit.edu	37	chr3	120973916	120973916	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagtctctgcatatgtcaTaatttataaattcagcagac	7	7	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120973916	C	C	120973916	3	2	130	1	0	0	0	0	1	0	0	0	15475	1406	49	5	1674	5	STXBP5L	3	120973916	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1528887	120973916	77048514	193	117169											
CD86	942	broad.mit.edu	37	chr3	121822487	121822487	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaccaggaaaacttggttCtgaatgaggtatacttaggc	12	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121822487	A	A	121822487	3	1	130	1	0	0	0	0	1	0	0	0	3073	912	32	3	203	3	CD86	3	121822487	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	848571	121822487	76199943	194	117170											
SEMA5B	54437	broad.mit.edu	37	chr3	122645244	122645244	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcaggactcacacgttGgttgtgaaaactccatagat	12	8	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122645244	T	T	122645244	2	4	130	1	0	0	0	0	0	0	0	1	14151	1335	47	2		2	SEMA5B	3	122645244	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	822757	122645244	75377186	195	117171											
ALDH1L1	10840	broad.mit.edu	37	chr3	125850120	125850120	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattccaagccaccagttgTggtcatttgctgcgcagcat	9	12	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125850120	C	C	125850120	1	2	130	0	1	0	0	0	0	0	0	0	494	1711	59	5		5	ALDH1L1	3	125850120	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	3204876	125850120	72172310	196	117172											
IFT122	55764	broad.mit.edu	37	chr3	129231104	129231104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgccttttggcctggcccAgcagcagctcttgaagaact	10	13	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129231104	T	T	129231104	1	4	130	0	1	0	0	0	0	0	0	0	7625	203	7	5		5	IFT122	3	129231104	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	3380984	129231104	68791326	197	117173											
PLXND1	23129	broad.mit.edu	37	chr3	129290329	129290329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccaccccctcccaccCatcaggcccccgaatgcctc	7	23	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129290329	A	A	129290329	1	1	130	0	1	0	0	0	0	0	0	0	12222	609	21	2		2	PLXND1	3	129290329	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	59225	129290329	68732101	198	117174											
ACAD11	84129	broad.mit.edu	37	chr3	132345611	132345611	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgacctttccgagtctgtAcaaacaactgtccagtagta	7	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132345611	G	G	132345611	3	3	130	1	0	0	0	0	1	0	0	0	109	391	14	5	1269	5	ACAD11	3	132345611	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	3055282	132345611	65676819	199	117175											
SRPRB	58477	broad.mit.edu	37	chr3	133524673	133524673	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgtcgcttttgctgtaccGgggaccacgcgtctcatcca	10	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133524673	A	A	133524673	1	1	130	0	1	0	0	0	0	0	0	0	15281	1131	39	4		4	SRPRB	3	133524673	5'Flank	SNP	G	TCGA-44-6778-01A-11D-1855-08	1179062	133524673	64497757	200	117176											
EPHB1	2047	broad.mit.edu	37	chr3	134968458	134968458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtctctgtatagaccagGcctggatggggagcaccttg	13	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134968458	T	T	134968458	1	4	130	0	1	0	0	0	0	0	0	0	5216	1218	42	3		3	EPHB1	3	134968458	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1443785	134968458	63053972	201	117177											
PIK3CB	5291	broad.mit.edu	37	chr3	138474811	138474811	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtaattgtgaacttgcTtccataacatctatgagaaa	8	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138474811	G	G	138474811	3	3	130	1	0	0	0	0	1	0	0	0	12009	1609	56	5	3112	5	PIK3CB	3	138474811	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	3506353	138474811	59547619	202	117178											
PIK3CB	5291	broad.mit.edu	37	chr3	138477997	138477997	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatgctaaacacatagaaaTtatacctattaacatacctg	4	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138477997	G	G	138477997	1	3	130	0	1	0	0	0	0	0	0	0	12009	1508	52	5		5	PIK3CB	3	138477997	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	3186	138477997	59544433	203	117179											
PCOLCE2	26577	broad.mit.edu	37	chr3	142542439	142542439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacttttgttgacacaagGccacggtgggttttaaacct	9	9	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142542439	T	T	142542439	3	4	130	1	0	0	0	0	1	0	0	0	11689	1203	42	3	375	3	PCOLCE2	3	142542439	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4064442	142542439	55479991	204	117180											
FAM194A	131831	broad.mit.edu	37	chr3	150391735	150391735	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaaaataacttgttgaaaGaggatacaatatttgtgttg	8	2	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150391735	C	C	150391735	1	2	130	0	1	0	0	0	0	0	0	0	5573	957	33	4		4	FAM194A	3	150391735	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	7849296	150391735	47630695	205	117181											
FAM194A	131831	broad.mit.edu	37	chr3	150396374	150396374	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcacatagaaatacataTatgttttaaattttctaaag	4	4	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150396374	C	C	150396374	1	2	130	0	1	0	0	0	0	0	0	0	5573	1421	49	5		5	FAM194A	3	150396374	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	4639	150396374	47626056	206	117182											
KCNAB1	7881	broad.mit.edu	37	chr3	155893915	155893915	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctctttgggggcaaatgGccagacatcccagacacgaa	10	13	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155893915	A	A	155893915	1	1	130	0	1	0	0	0	0	0	0	0	8079	1218	42	4		4	KCNAB1	3	155893915	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	5497541	155893915	42128515	207	117183											
VEPH1	79674	broad.mit.edu	37	chr3	157131722	157131722	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgccatctgtccagtgaggTaggggaatctctcaccaatc	10	11	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157131722	A	A	157131722	3	1	130	1	0	0	0	0	1	0	0	0	17281	1638	57	5	1683	5	VEPH1	3	157131722	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1237807	157131722	40890708	208	117184											
PHC3	80012	broad.mit.edu	37	chr3	169824771	169824771	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaggaaaaaaaggttccaAaaatttaattatgcaaattt	5	4	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169824771	G	G	169824771	1	3	130	0	1	0	0	0	0	0	0	0	11913	29	1	5		5	PHC3	3	169824771	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	12693049	169824771	28197659	209	117185											
TNIK	23043	broad.mit.edu	37	chr3	170858263	170858263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccggcgctgctccctctcCtgctgcttccgcagctcctt	9	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170858263	A	A	170858263	3	1	130	1	0	0	0	0	1	0	0	0	16436	680	24	2	2909	2	TNIK	3	170858263	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1033492	170858263	27164167	210	117186											
ECT2	1894	broad.mit.edu	37	chr3	172533350	172533350	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagtttgatttttagaaacAgttgtgtgtttttaagataa	8	1	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172533350	T	T	172533350	1	4	130	0	1	0	0	0	0	0	0	0	4941	203	7	5		5	ECT2	3	172533350	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1675087	172533350	25489080	211	117187											
NLGN1	22871	broad.mit.edu	37	chr3	173322896	173322896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatggtgagtttattgcaGgaaaaacagggagatatatt	13	2	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173322896	T	T	173322896	1	4	130	0	1	0	0	0	0	0	0	0	10556	1015	35	2		2	NLGN1	3	173322896	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	789546	173322896	24699534	212	117188											
EPHB3	2049	broad.mit.edu	37	chr3	184293537	184293537	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacctaggctggggagaaGccaggttctcatggagctgc	15	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184293537	T	T	184293537	1	4	130	0	1	0	0	0	0	0	0	0	5218	986	34	3		3	EPHB3	3	184293537	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	10970641	184293537	13728893	213	117189											
MAGEF1	64110	broad.mit.edu	37	chr3	184428789	184428789	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtctgctagggcctcaCggtactgcactggccagtgc	12	15	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184428789	G	G	184428789	3	3	130	1	0	0	0	0	1	0	0	0	9279	536	19	4	106	4	MAGEF1	3	184428789	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	135252	184428789	13593641	214	117190											
ETV5	2119	broad.mit.edu	37	chr3	185774902	185774902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaactccatgcctcgacCtgtccaggcaatgaagtggg	11	12	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185774902	A	A	185774902	3	1	130	1	0	0	0	0	1	0	0	0	5324	681	24	2	373	2	ETV5	3	185774902	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1346113	185774902	12247528	215	117191											
MASP1	5648	broad.mit.edu	37	chr3	186954283	186954283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgccacgggaagaggCcaggctcagcatttcggccc	15	14	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186954283	A	A	186954283	1	1	130	0	1	0	0	0	0	0	0	0	9414	739	26	3		3	MASP1	3	186954283	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1179381	186954283	11068147	216	117192											
ATP13A3	79572	broad.mit.edu	37	chr3	194180297	194180297	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacacaaataaacgttacacCaaaaagcatataatcacttg	3	9	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	194180297	G	G	194180297	1	3	130	0	1	0	0	0	0	0	0	0	1129	609	21	4		4	ATP13A3	3	194180297	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	7226014	194180297	3842133	217	117193											
TFRC	7037	broad.mit.edu	37	chr3	195785607	195785607	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttttaaataaaaaacttgTattatatcttcttgaaaaga	3	3	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195785607	A	A	195785607	1	1	130	0	1	0	0	0	0	0	0	0	15935	1653	57	5		5	TFRC	3	195785607	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1605310	195785607	2236823	218	117194											
RNF168	165918	broad.mit.edu	37	chr3	196215352	196215353	+	Intron	INS	-	A	A													acagagtgagactccatctcINSaaaaaaaaaaaattatccat					rs66889619		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196215353	A	A	196215352	6	5	130	0	1	1	1	0	0	0	0	0	13570	841	29	0		0	RNF168	3	196215352	Intron	INS	-	TCGA-44-6778-01A-11D-1855-08	429745	196215352	1807078	219	117195											
PIGG	54872	broad.mit.edu	37	chr4	517555	517555	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaggccacggaagcccctCtacctccgaagtgctcagag	10	15	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	517555	A	A	517555	3	1	130	1	0	0	0	0	1	0	0	0	11983	913	32	3	1956	3	PIGG	4	517555	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08		517555	190636721	220	117196											
ZFYVE28	57732	broad.mit.edu	37	chr4	2321975	2321975	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcggtccaagttcagaggtCcgtccgcatagaccacgagg	13	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2321975	T	T	2321975	3	4	130	1	0	0	0	0	1	0	0	0	17796	855	30	4	1966	4	ZFYVE28	4	2321975	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1804420	2321975	188832301	221	117197											
PPP2R2C	5522	broad.mit.edu	37	chr4	6325019	6325019	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggcaggggccgggaaCtgcacatacctagtgcatgt	16	9	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6325019	A	A	6325019	1	1	130	0	1	0	0	0	0	0	0	0	12487	580	20	3		3	PPP2R2C	4	6325019	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	4003044	6325019	184829257	222	117198											
MAN2B2	23324	broad.mit.edu	37	chr4	6588587	6588587	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaacaccctcacctctgcAgttctgcatgaccctgcctg	6	16	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6588587	T	T	6588587	1	4	130	0	1	0	0	0	0	0	0	0	9309	203	7	5		5	MAN2B2	4	6588587	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	263568	6588587	184565689	223	117199											
WDR1	9948	broad.mit.edu	37	chr4	10117832	10117832	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggagacgcccctctccaCctgcgggaggctggcgaaca	13	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10117832	G	G	10117832	3	3	130	1	0	0	0	0	1	0	0	0	17399	507	18	4	1833	4	WDR1	4	10117832	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	3529245	10117832	181036444	224	117200											
BST1	683	broad.mit.edu	37	chr4	15713580	15713580	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagatggaacatagtcattCagagtctgggccccaggtca	12	9	4	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15713580	A	A	15713580	1	1	130	0	1	0	0	0	0	0	0	0	1542	841	29	3		3	BST1	4	15713580	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	5595748	15713580	175440696	225	117201											
PROM1	8842	broad.mit.edu	37	chr4	16002289	16002289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacaaagaatgattcaatAttacctactgatacttacta	3	8	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16002289	G	G	16002289	1	3	130	0	1	0	0	0	0	0	0	0	12661	464	16	5		5	PROM1	4	16002289	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	288709	16002289	175151987	226	117202											
DHX15	1665	broad.mit.edu	37	chr4	24577853	24577853	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaatatgtaccatggtaTacaataactcacctgtgttg	7	7	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24577853	C	C	24577853	1	2	130	0	1	0	0	0	0	0	0	0	4541	1421	49	5		5	DHX15	4	24577853	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	8575564	24577853	166576423	227	117203											
PCDH7	5099	broad.mit.edu	37	chr4	30732251	30732251	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttacaaacacaaagttgGcattaaaatttttcttagct	4	6	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30732251	C	C	30732251	1	2	130	0	1	0	0	0	0	0	0	0	11610	1218	42	4		4	PCDH7	4	30732251	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	6154398	30732251	160422025	228	117204											
ARAP2	116984	broad.mit.edu	37	chr4	36109390	36109390	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttataatcataaatttTaaaaaatccatttgaaaaca	1	4	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36109390	C	C	36109390	1	2	130	0	1	0	0	0	0	0	0	0	841	1769	61	5		5	ARAP2	4	36109390	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	5377139	36109390	155044886	229	117205											
GABRA4	2557	broad.mit.edu	37	chr4	46967350	46967350	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcatgtggaatagggttAacaaaactacaataactcaa	6	6	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46967350	G	G	46967350	1	3	130	0	1	0	0	0	0	0	0	0	6223	377	13	5		5	GABRA4	4	46967350	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	10857960	46967350	144186926	230	117206											
GABRA4	2557	broad.mit.edu	37	chr4	46995298	46995298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagtggccaaaggggtcccGgagctagccatttctccact	12	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46995298	T	T	46995298	1	4	130	0	1	0	0	0	0	0	0	0	6223	1131	39	1		1	GABRA4	4	46995298	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	27948	46995298	144158978	231	117207											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68810101	68810101	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgattaagcaggtctgGgatggggcctagcaatctgc	13	9	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68810101	T	T	68810101	1	4	130	0	1	0	0	0	0	0	0	0	16362	1247	43	2		2	TMPRSS11A	4	68810101	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	21814803	68810101	122344175	232	117208											
UGT2B15	7366	broad.mit.edu	37	chr4	69536220	69536220	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctcttccaggattgtcttCatatttatccaatggctgta	7	9	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69536220	T	T	69536220	3	4	130	1	0	0	0	0	1	0	0	0	17084	826	29	4	3116	4	UGT2B15	4	69536220	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	726119	69536220	121618056	233	117209											
UGT2B11	10720	broad.mit.edu	37	chr4	70080232	70080232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacttcaaatttaagagtgGatgcatcattgggatcaaaa	8	5	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70080232	T	T	70080232	3	4	130	1	0	0	0	0	1	0	0	0	17083	1174	41	3	1404	3	UGT2B11	4	70080232	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	544012	70080232	121074044	234	117210											
SULT1B1	27284	broad.mit.edu	37	chr4	70596264	70596264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatccatcactgtagttgGtagatgtgtataatttacca	8	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70596264	T	T	70596264	3	4	130	1	0	0	0	0	1	0	0	0	15494	1261	44	3	165	3	SULT1B1	4	70596264	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	516032	70596264	120558012	235	117211											
MUC7	4589	broad.mit.edu	37	chr4	71346811	71346811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattccatctgtgactttccCatcagcttccaccaaaatta	3	13	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71346811	A	A	71346811	3	1	130	1	0	0	0	0	1	0	0	0	10075	594	21	2	356	2	MUC7	4	71346811	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	750547	71346811	119807465	236	117212											
NPFFR2	10886	broad.mit.edu	37	chr4	73013164	73013164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgatgctctcagactacGctgacctttctccaaatgaa	6	11	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73013164	T	T	73013164	3	4	130	1	0	0	0	0	1	0	0	0	10673	1087	38	3	1224	3	NPFFR2	4	73013164	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1666353	73013164	118141112	237	117213											
ANKRD17	26057	broad.mit.edu	37	chr4	73956470	73956470	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtaaaggatctgaatttGgcaaatatgaggattttcct	10	4	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73956470	A	A	73956470	3	1	130	1	0	0	0	0	1	0	0	0	646	1348	47	4	960	4	ANKRD17	4	73956470	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	943306	73956470	117197806	238	117214											
SCARB2	950	broad.mit.edu	37	chr4	77100619	77100620	+	Intron	INS	-	A	A													aatctggcttggggtgccccINSaacccactgtcagctaaaaa							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77100620	A	A	77100619	6	5	130	0	1	1	1	0	0	0	0	0	13994	609	21	0		0	SCARB2	4	77100619	Intron	INS	-	TCGA-44-6778-01A-11D-1855-08	3144149	77100619	114053657	239	117215											
CCNG2	901	broad.mit.edu	37	chr4	78081781	78081781	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaacaacttgattgtgttCtgtcttaagaataggagcat	9	5	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78081781	T	T	78081781	1	4	130	0	1	0	0	0	0	0	0	0	2954	928	32	4		4	CCNG2	4	78081781	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	981162	78081781	113072495	240	117216											
COPS4	51138	broad.mit.edu	37	chr4	83989540	83989540	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttctcttttcatatgtgaAtaactaaaagatatgataaa	5	4	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83989540	G	G	83989540	1	3	130	0	1	0	0	0	0	0	0	0	3767	116	4	5		5	COPS4	4	83989540	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	5907759	83989540	107164736	241	117217											
WDFY3	23001	broad.mit.edu	37	chr4	85729687	85729687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaataaggaacatcttcCatattcagcaggaacaagga	8	7	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85729687	A	A	85729687	1	1	130	0	1	0	0	0	0	0	0	0	17397	609	21	2		2	WDFY3	4	85729687	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1740147	85729687	105424589	242	117218											
ARHGAP24	83478	broad.mit.edu	37	chr4	86916250	86916250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgtacagaatggaacGgtgcgcatgggcattttgaa	13	7	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86916250	T	T	86916250	2	4	130	1	0	0	0	0	0	0	0	1	875	1103	39	1		1	ARHGAP24	4	86916250	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1186563	86916250	104238026	243	117219											
GRID2	2895	broad.mit.edu	37	chr4	94316706	94316706	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cataaagactatacagaggtGatgggactgttcttcaggca	11	7	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94316706	T	T	94316706	1	4	130	0	1	0	0	0	0	0	0	0	6838	1305	45	3		3	GRID2	4	94316706	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	7400456	94316706	96837570	244	117220											
C4orf37	285555	broad.mit.edu	37	chr4	98762100	98762100	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacctgaaaaaaaatttaaTagatgagcataaatatatct	4	4	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98762100	C	C	98762100	1	2	130	0	1	0	0	0	0	0	0	0	2290	1421	49	5		5	C4orf37	4	98762100	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	4445394	98762100	92392176	245	117221											
TACR3	6870	broad.mit.edu	37	chr4	104577453	104577453	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggtgtatgtaatacccatGatgagcaatgggaaacagta	11	5	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104577453	A	A	104577453	2	1	130	1	0	0	0	0	0	0	0	1	15626	1280	45	4		4	TACR3	4	104577453	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	5815353	104577453	86576823	246	117222											
TET2	54790	broad.mit.edu	37	chr4	106157611	106157611	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtttcttgttcaaacaatAcacacctagtttcagagaat	6	8	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106157611	G	G	106157611	3	3	130	1	0	0	0	0	1	0	0	0	15892	391	14	5	2514	5	TET2	4	106157611	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	1580158	106157611	84996665	247	117223											
DKK2	27123	broad.mit.edu	37	chr4	108124792	108124792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctccacctcaggataCcactttgcacggactttttc	8	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108124792	A	A	108124792	1	1	130	0	1	0	0	0	0	0	0	0	4585	522	18	3		3	DKK2	4	108124792	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1967181	108124792	83029484	248	117224											
ANK2	287	broad.mit.edu	37	chr4	114278125	114278125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggccatgagtcctagcaGctcagctgctcctgtctctt	10	13	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114278125	T	T	114278125	3	4	130	1	0	0	0	0	1	0	0	0	621	971	34	3	8566	3	ANK2	4	114278125	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	6153333	114278125	76876151	249	117225											
MYOZ2	51778	broad.mit.edu	37	chr4	120085547	120085547	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgattacaggagctttaaCaggtaattcaatggtcctgg	10	8	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120085547	G	G	120085547	3	3	130	1	0	0	0	0	1	0	0	0	10190	477	17	4	572	4	MYOZ2	4	120085547	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	5807422	120085547	71068729	250	117226											
TMEM155	132332	broad.mit.edu	37	chr4	122682832	122682832	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcaccagatggcatcagttCtgcatctacagctgtgccct	9	14	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122682832	A	A	122682832	4	1	130	1	0	0	0	0	0	1	0	0	16195	922	32	3	327	3	TMEM155	4	122682832	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2597285	122682832	68471444	251	117227											
GYPA	2993	broad.mit.edu	37	chr4	145038115	145038115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggagataaagagagcagCaaaattatgaaagtctgaaa	10	4	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145038115	A	A	145038115	1	1	130	0	1	0	0	0	0	0	0	0	6973	725	25	3		3	GYPA	4	145038115	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	22355283	145038115	46116161	252	117228											
FGB	2244	broad.mit.edu	37	chr4	155489562	155489562	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattatcaggaaaggaggtGaaacatctgaaatgtatctc	9	5	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155489562	T	T	155489562	4	4	130	1	0	0	0	0	0	1	0	0	5888	1291	45	3	766	3	FGB	4	155489562	Nonsense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	10451447	155489562	35664714	253	117229											
RXFP1	59350	broad.mit.edu	37	chr4	159568063	159568063	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tactcattgtcagcttgtagGatctttggccattctgtcca	8	10	4	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159568063	C	C	159568063	3	2	130	1	0	0	0	0	1	0	0	0	13870	1174	41	4	1528	4	RXFP1	4	159568063	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4078501	159568063	31586213	254	117230											
DDX60	55601	broad.mit.edu	37	chr4	169157528	169157528	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaatgttttgagcctaTataaaacaaagtgtcttctt	6	5	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169157528	C	C	169157528	1	2	130	0	1	0	0	0	0	0	0	0	4411	1421	49	5		5	DDX60	4	169157528	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	9589465	169157528	21996748	255	117231											
GALNTL6	442117	broad.mit.edu	37	chr4	173873452	173873452	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcctacctatgagactGtgtgcctcccccatagcctc	8	17	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173873452	C	C	173873452	1	2	130	0	1	0	0	0	0	0	0	0	6287	1392	48	4		4	GALNTL6	4	173873452	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	4715924	173873452	17280824	256	117232											
NEIL3	55247	broad.mit.edu	37	chr4	178262519	178262519	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgacatatgtacaaacataTgtaaatttttagcagatgat	6	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178262519	C	C	178262519	1	2	130	0	1	0	0	0	0	0	0	0	10415	1479	51	5		5	NEIL3	4	178262519	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	4389067	178262519	12891757	257	117233											
SLC9A3	6550	broad.mit.edu	37	chr5	488523	488523	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaacacggccaggacggCcaccgggtccacagccgcca	11	18	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	488523	T	T	488523	3	4	130	1	0	0	0	0	1	0	0	0	14827	739	26	4	1981	4	SLC9A3	5	488523	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08		488523	180426737	258	117234											
BRD9	65980	broad.mit.edu	37	chr5	886955	886955	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccgtgacgatgggatgGgatggggatggtcacagcct	19	7	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	886955	A	A	886955	1	1	130	0	1	0	0	0	0	0	0	0	1516	1247	43	4		4	BRD9	5	886955	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	398432	886955	180028305	259	117235											
LPCAT1	79888	broad.mit.edu	37	chr5	1489886	1489886	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccactttccgttggactgcGcccgtctcttgatttcttct	8	14	3	1	rs147744743	byFrequency	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1489886	A	A	1489886	3	1	130	1	0	0	0	0	1	0	0	0	8997	1087	38	4	1067	4	LPCAT1	5	1489886	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	602931	1489886	179425374	260	117236											
MED10	84246	broad.mit.edu	37	chr5	6378631	6378631	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgacccacacagcctcaaCcagcagcgccgcaggcgtgg	11	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6378631	A	A	6378631	1	1	130	0	1	0	0	0	0	0	0	0	9519	522	18	3		3	MED10	5	6378631	5'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	4888745	6378631	174536629	261	117237											
SEMA5A	9037	broad.mit.edu	37	chr5	9197321	9197321	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggatacggtagccaggccgAgcgcgagttttcttggtact	15	9	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9197321	T	T	9197321	3	4	130	1	0	0	0	0	1	0	0	0	14150	304	11	5	2253	5	SEMA5A	5	9197321	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	2818690	9197321	171717939	262	117238											
ROPN1L	83853	broad.mit.edu	37	chr5	10461538	10461538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcctgtttcacttcccCcttgtagggaaaaactcagt	6	11	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10461538	A	A	10461538	1	1	130	0	1	0	0	0	0	0	0	0	13636	638	22	2		2	ROPN1L	5	10461538	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1264217	10461538	170453722	263	117239											
DNAH5	1767	broad.mit.edu	37	chr5	13735211	13735211	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactcctccatctgcacctgTgcgctatagtctctattctt	5	14	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13735211	A	A	13735211	1	1	130	0	1	0	0	0	0	0	0	0	4644	1711	59	5		5	DNAH5	5	13735211	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	3273673	13735211	167180049	264	117240											
MARCH11	441061	broad.mit.edu	37	chr5	16067755	16067755	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagagctgtcaatggcaacCacaaagtcctacttgtggaa	10	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16067755	G	G	16067755	3	3	130	1	0	0	0	0	1	0	0	0	9392	595	21	4	178	4	MARCH11	5	16067755	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2332544	16067755	164847505	265	117241											
CDH18	1016	broad.mit.edu	37	chr5	19612583	19612583	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcattgacatcggttaaGgtgatgttgactgttgtaga	12	4	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19612583	C	C	19612583	2	2	130	1	0	0	0	0	0	0	0	1	3133	987	35	4		4	CDH18	5	19612583	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	3544828	19612583	161302677	266	117242											
CDH12	1010	broad.mit.edu	37	chr5	21752327	21752327	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgccttcgcagtgctAcatacagtacaactatggct	7	12	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21752327	T	T	21752327	3	4	130	1	0	0	0	0	1	0	0	0	3128	391	14	5	484	5	CDH12	5	21752327	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	2139744	21752327	159162933	267	117243											
PRDM9	56979	broad.mit.edu	37	chr5	23509789	23509789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagttctcaggtggtggCatctgcccacaattcccttt	8	11	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509789	A	A	23509789	1	1	130	0	1	0	0	0	0	0	0	0	12569	725	25	3		3	PRDM9	5	23509789	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1757462	23509789	157405471	268	117244											
CDH10	1008	broad.mit.edu	37	chr5	24487952	24487952	+	Frame_Shift_Del	DEL	G	-	-													taggttgcaagtgagtcgtaGgggggtgcggtggggtcaag							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24487952	-	-	24487952	7	5	130	1	0	1	0	1	0	0	0	0	3126	987	35	0	183	0	CDH10	5	24487952	Frame_Shift_Del	DEL	G	TCGA-44-6778-01A-11D-1855-08	978163	24487952	156427308	269	117245											
CDH10	1008	broad.mit.edu	37	chr5	24491631	24491631	+	Intron	DEL	A	-	-													tttaatagccacaattcttcAaaatcatactaaagagccta							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24491631	-	-	24491631	6	5	130	0	1	1	0	1	0	0	0	0	3126	145	5	0		0	CDH10	5	24491631	Intron	DEL	A	TCGA-44-6778-01A-11D-1855-08	3679	24491631	156423629	270	117246											
CDH9	1007	broad.mit.edu	37	chr5	26915772	26915772	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggaacactggcagtgtaTaagtcttttgtaaattttgg	10	5	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26915772	C	C	26915772	2	2	130	1	0	0	0	0	0	0	0	1	3147	1403	49	5		5	CDH9	5	26915772	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	2424141	26915772	153999488	271	117247											
NUP155	9631	broad.mit.edu	37	chr5	37358076	37358076	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcactccagcctactcgaTggaacgagactccatctcga	8	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37358076	G	G	37358076	1	3	130	0	1	0	0	0	0	0	0	0	10851	1479	51	5		5	NUP155	5	37358076	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	10442304	37358076	143557184	272	117248											
DAB2	1601	broad.mit.edu	37	chr5	39381742	39381742	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggacagggagggagggaGaagccttagttactcactaa	14	7	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39381742	T	T	39381742	1	4	130	0	1	0	0	0	0	0	0	0	4251	957	33	3		3	DAB2	5	39381742	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2023666	39381742	141533518	273	117249											
PTGER4	5734	broad.mit.edu	37	chr5	40692466	40692467	+	Frame_Shift_Ins	INS	-	A	A													tgaaacactgaacttatcagINSaaaaatgtatataataggca							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40692467	A	A	40692466	7	5	130	1	0	1	1	0	0	0	0	0	12851	943	33	0	1459	0	PTGER4	5	40692466	Frame_Shift_Ins	INS	-	TCGA-44-6778-01A-11D-1855-08	1310724	40692466	140222794	274	117250											
HEATR7B2	133558	broad.mit.edu	37	chr5	41049340	41049340	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttcctggaaatggatccCtcataatagaaaagcttttc	7	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41049340	G	G	41049340	1	3	130	0	1	0	0	0	0	0	0	0	7102	696	24	4		4	HEATR7B2	5	41049340	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	356874	41049340	139865920	275	117251											
HEATR7B2	133558	broad.mit.edu	37	chr5	41054947	41054947	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctcaacctgggctctgaAagacagagggagaaattgag	12	9	2	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41054947	G	G	41054947	1	3	130	0	1	0	0	0	0	0	0	0	7102	29	1	5		5	HEATR7B2	5	41054947	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	5607	41054947	139860313	276	117252											
C6	729	broad.mit.edu	37	chr5	41172184	41172184	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctattttatttgtatccCctattccaacacacagggtt	5	10	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41172184	T	T	41172184	1	4	130	0	1	0	0	0	0	0	0	0	2338	638	22	4		4	C6	5	41172184	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	117237	41172184	139743076	277	117253											
PLCXD3	345557	broad.mit.edu	37	chr5	41381998	41381998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctagctttgggggtcagcaCcacctgagatataaaaaacg	11	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41381998	A	A	41381998	3	1	130	1	0	0	0	0	1	0	0	0	12138	507	18	3	231	3	PLCXD3	5	41381998	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	209814	41381998	139533262	278	117254											
GHR	2690	broad.mit.edu	37	chr5	42465877	42465877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcaaatccatctccttgGcccatttcacgtccactgcc	5	16	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42465877	T	T	42465877	1	4	130	0	1	0	0	0	0	0	0	0	6435	1218	42	3		3	GHR	5	42465877	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1083879	42465877	138449383	279	117255											
MGC42105	167359	broad.mit.edu	37	chr5	43280356	43280356	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaaaccgtggccaaacTaaaaaagagcatcctcgagg	11	10	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43280356	C	C	43280356	3	2	130	1	0	0	0	0	1	0	0	0	9645	1522	53	5	846	5	MGC42105	5	43280356	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	814479	43280356	137634904	280	117256											
IPO11	51194	broad.mit.edu	37	chr5	61780112	61780112	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggaaatcttggtgttttAaaattaacttactctttcgt	6	6	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61780112	G	G	61780112	1	3	130	0	1	0	0	0	0	0	0	0	7863	377	13	5		5	IPO11	5	61780112	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	18499756	61780112	119135148	281	117257											
PPWD1	23398	broad.mit.edu	37	chr5	64883126	64883126	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atttggacgagtgactaaagGaatggaagttgtacagagga	14	3	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64883126	C	C	64883126	3	2	130	1	0	0	0	0	1	0	0	0	12515	1174	41	4	1886	4	PPWD1	5	64883126	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3103014	64883126	116032134	282	117258											
RASGRF2	5924	broad.mit.edu	37	chr5	80382849	80382849	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcggcacaccccggaaggcGttctgaacaggcgtgacggg	15	13	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80382849	A	A	80382849	1	1	130	0	1	0	0	0	0	0	0	0	13181	1160	40	4		4	RASGRF2	5	80382849	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	15499723	80382849	100532411	283	117259											
RIOK2	55781	broad.mit.edu	37	chr5	96503332	96503332	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcagaaaattcagttacAgagttgttttcaacaacctg	6	9	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96503332	G	G	96503332	2	3	130	1	0	0	0	0	0	0	0	1	13489	175	7	5		5	RIOK2	5	96503332	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	16120483	96503332	84411928	284	117260											
HSD17B4	3295	broad.mit.edu	37	chr5	118835179	118835179	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgcccaccttcggagttatCataggtcagaaatctatgat	8	9	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118835179	T	T	118835179	2	4	130	1	0	0	0	0	0	0	0	1	7453	816	29	4		4	HSD17B4	5	118835179	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	22331847	118835179	62080081	285	117261											
SNCAIP	9627	broad.mit.edu	37	chr5	121726756	121726756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacggctaaatttttttgcCtttcttttctgcttctgtct	5	9	4	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121726756	A	A	121726756	1	1	130	0	1	0	0	0	0	0	0	0	14955	696	24	2		2	SNCAIP	5	121726756	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2891577	121726756	59188504	286	117262											
LMNB1	4001	broad.mit.edu	37	chr5	126161931	126161931	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgctaagttaattgaActgaagctgtctttaagttt	8	5	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126161931	G	G	126161931	1	3	130	0	1	0	0	0	0	0	0	0	8923	58	2	5		5	LMNB1	5	126161931	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	4435175	126161931	54753329	287	117263											
FBN2	2201	broad.mit.edu	37	chr5	127866324	127866324	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttgatgatatttgcccacTggaacaagtacacatgttag	10	7	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127866324	A	A	127866324	3	1	130	1	0	0	0	0	1	0	0	0	5760	1580	55	5	8590	5	FBN2	5	127866324	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1704393	127866324	53048936	288	117264											
FBN2	2201	broad.mit.edu	37	chr5	127873059	127873059	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaccctcggagcacgtcctGctgtcctcgccggcggacgc	12	17	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127873059	C	C	127873059	3	2	130	1	0	0	0	0	1	0	0	0	5760	1328	46	4	8760	4	FBN2	5	127873059	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	6735	127873059	53042201	289	117265											
SHROOM1	134549	broad.mit.edu	37	chr5	132160214	132160214	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcacctggaatcccaggCtccagctaggagagcattcc	9	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132160214	T	T	132160214	1	4	130	0	1	0	0	0	0	0	0	0	14406	812	28	4		4	SHROOM1	5	132160214	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4287155	132160214	48755046	290	117266											
UBE2B	7320	broad.mit.edu	37	chr5	133712231	133712231	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggtgttactaaactctAtcttaaaactccacaaatca	3	10	3	0	rs75153813	byFrequency;by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133712231	T	T	133712231	1	4	130	0	1	0	0	0	0	0	0	0	16971	464	16	5		5	UBE2B	5	133712231	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1552017	133712231	47203029	291	117267											
BRD8	10902	broad.mit.edu	37	chr5	137475931	137475931	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagtttatttttttggcAaatagactcaactatacttt	5	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137475931	C	C	137475931	1	2	130	0	1	0	0	0	0	0	0	0	1515	145	5	5		5	BRD8	5	137475931	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	3763700	137475931	43439329	292	117268											
PCDHB2	56133	broad.mit.edu	37	chr5	140474750	140474750	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggcggagctacggattAgggacgtaaatgatcattcc	12	8	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140474750	T	T	140474750	3	4	130	1	0	0	0	0	1	0	0	0	11636	411	15	5	378	5	PCDHB2	5	140474750	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	2998819	140474750	40440510	293	117269											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736646	140736646	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcacacaggcgaggtgCgcaccgcacgggccctgctg	16	15	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140736646	G	G	140736646	3	3	130	1	0	0	0	0	1	0	0	0	11650	768	27	4	1881	4	PCDHGA4	5	140736646	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	261896	140736646	40178614	294	117270											
SPINK6	404203	broad.mit.edu	37	chr5	147594419	147594419	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttagaacttctatggtgAgtacttacgatattgcactg	9	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147594419	T	T	147594419	1	4	130	0	1	0	0	0	0	0	0	0	15181	319	11	5		5	SPINK6	5	147594419	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	6857773	147594419	33320841	295	117271											
HTR4	3360	broad.mit.edu	37	chr5	147862721	147862721	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcttaggacctggccCtctttcggaggcatggctgt	13	12	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147862721	G	G	147862721	1	3	130	0	1	0	0	0	0	0	0	0	7519	696	24	4		4	HTR4	5	147862721	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	268302	147862721	33052539	296	117272											
ABLIM3	22885	broad.mit.edu	37	chr5	148586546	148586546	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagggcccagggtgctttgcTcagcagtgtcctcttgtctt	12	11	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148586546	A	A	148586546	1	1	130	0	1	0	0	0	0	0	0	0	96	1566	54	5		5	ABLIM3	5	148586546	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	723825	148586546	32328714	297	117273											
PDE6A	5145	broad.mit.edu	37	chr5	149294398	149294398	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccttgtcagaacacttaTgtattttatggaatgaagtg	8	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149294398	C	C	149294398	1	2	130	0	1	0	0	0	0	0	0	0	11739	1479	51	5		5	PDE6A	5	149294398	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	707852	149294398	31620862	298	117274											
GLRA1	2741	broad.mit.edu	37	chr5	151228577	151228577	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaggatggcgctgcaagacCcagactctggacagtgagcc	14	11	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151228577	G	G	151228577	1	3	130	0	1	0	0	0	0	0	0	0	6518	638	22	4		4	GLRA1	5	151228577	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1934179	151228577	29686683	299	117275											
GRIA1	2890	broad.mit.edu	37	chr5	153174098	153174098	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaggctgggtaatggagctGattcaccgatcccttgggtc	14	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153174098	C	C	153174098	1	2	130	0	1	0	0	0	0	0	0	0	6833	1305	45	4		4	GRIA1	5	153174098	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1945521	153174098	27741162	300	117276											
MED7	9443	broad.mit.edu	37	chr5	156565909	156565909	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttactctcattcctgcttcTgaatgaggcaaatcatcagg	7	10	4	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156565909	C	C	156565909	2	2	130	1	0	0	0	0	0	0	0	1	9545	1567	55	5		5	MED7	5	156565909	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	3391811	156565909	24349351	301	117277											
ITK	3702	broad.mit.edu	37	chr5	156645115	156645115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgtccacttaaaggacCattcagctgctaaatctcca	7	12	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156645115	A	A	156645115	1	1	130	0	1	0	0	0	0	0	0	0	7979	609	21	2		2	ITK	5	156645115	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	79206	156645115	24270145	302	117278											
GABRG2	2566	broad.mit.edu	37	chr5	161578770	161578770	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccttcaaggtataatgttTttggaatggaaattcactgc	8	6	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161578770	A	A	161578770	1	1	130	0	1	0	0	0	0	0	0	0	6232	1856	64	5		5	GABRG2	5	161578770	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	4933655	161578770	19336490	303	117279											
DOCK2	1794	broad.mit.edu	37	chr5	169145634	169145634	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccatgatgaaagagatgtAttttgaaaatattatccctt	6	5	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169145634	G	G	169145634	1	3	130	0	1	0	0	0	0	0	0	0	4727	464	16	5		5	DOCK2	5	169145634	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	7566864	169145634	11769626	304	117280											
DOCK2	1794	broad.mit.edu	37	chr5	169435718	169435718	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacatgagacggctaattgGcttctccatccgtgatatgt	11	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169435718	C	C	169435718	3	2	130	1	0	0	0	0	1	0	0	0	4727	1203	42	4	3326	4	DOCK2	5	169435718	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	290084	169435718	11479542	305	117281											
GRM6	2916	broad.mit.edu	37	chr5	178417662	178417662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctccaggctcaagatggGtgaggtcttggctccccagc	13	13	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178417662	T	T	178417662	3	4	130	1	0	0	0	0	1	0	0	0	6867	1261	44	3	1718	3	GRM6	5	178417662	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	8981944	178417662	2497598	306	117282											
ZNF354C	30832	broad.mit.edu	37	chr5	178506349	178506349	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtatcgatgtagggaatgtGgtaaagcctttagccagtgt	13	6	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178506349	C	C	178506349	3	2	130	1	0	0	0	0	1	0	0	0	17992	1348	47	4	930	4	ZNF354C	5	178506349	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	88687	178506349	2408911	307	117283											
DUSP22	56940	broad.mit.edu	37	chr6	348320	348320	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgcaggcaggtgcccctGaacggtgcccacagtctttc	12	13	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348320	T	T	348320	1	4	130	0	1	0	0	0	0	0	0	0	4861	1305	45	3		3	DUSP22	6	348320	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08		348320	170766747	308	117284											
LY86	9450	broad.mit.edu	37	chr6	6589075	6589075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtggtctgtagcgacagCggcttggaagtgctctacca	13	11	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6589075	A	A	6589075	3	1	130	1	0	0	0	0	1	0	0	0	9188	767	27	3	110	3	LY86	6	6589075	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	6240755	6589075	164525992	309	117285											
CAGE1	285782	broad.mit.edu	37	chr6	7331418	7331418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccttggaaataacgtaCatttccatgacaccaacact	5	11	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7331418	A	A	7331418	1	1	130	0	1	0	0	0	0	0	0	0	2598	493	17	3		3	CAGE1	6	7331418	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	742343	7331418	163783649	310	117286											
BMP6	654	broad.mit.edu	37	chr6	7861999	7861999	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaaccaaaacctttcccgGaggcctcctagacaggaatt	9	12	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7861999	C	C	7861999	1	2	130	0	1	0	0	0	0	0	0	0	1470	1189	41	4		4	BMP6	6	7861999	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	530581	7861999	163253068	311	117287											
SLC35B3	51000	broad.mit.edu	37	chr6	8428028	8428028	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtataaatgaataaaatgTatttagtattaagttagtta	7	0	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8428028	C	C	8428028	1	2	130	0	1	0	0	0	0	0	0	0	14691	1653	57	5		5	SLC35B3	6	8428028	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	566029	8428028	162687039	312	117288											
SYCP2L	221711	broad.mit.edu	37	chr6	10958967	10958967	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaaagcatgcactcaactTatgtaattatattaaatgtg	5	7	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10958967	A	A	10958967	1	1	130	0	1	0	0	0	0	0	0	0	15552	1769	61	5		5	SYCP2L	6	10958967	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	2530939	10958967	160156100	313	117289											
RNF182	221687	broad.mit.edu	37	chr6	13949728	13949728	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttataagaaaaaattacGgaaaaagacacttgcaagaa	8	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13949728	A	A	13949728	1	1	130	0	1	0	0	0	0	0	0	0	13577	1131	39	4		4	RNF182	6	13949728	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2990761	13949728	157165339	314	117290											
KDM1B	221656	broad.mit.edu	37	chr6	18213691	18213691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaacccaaaaaaCaaaacaaaacaaaaaacaac	0	8	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18213691	A	A	18213691	1	1	130	0	1	0	0	0	0	0	0	0	8193	493	17	3		3	KDM1B	6	18213691	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4263963	18213691	152901376	315	117291											
SLC17A3	10786	broad.mit.edu	37	chr6	25861852	25861852	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggattacatgtccttacCtgataaagcaatgctgcaga	8	8	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25861852	A	A	25861852	4	1	130	1	0	0	0	0	0	1	0	0	14531	695	24	2	903	2	SLC17A3	6	25861852	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	7648161	25861852	145253215	316	117292											
BTN3A2	11118	broad.mit.edu	37	chr6	26373142	26373142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccccttcttcaggagcGcccagccctggatcgcagcc	10	18	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26373142	T	T	26373142	3	4	130	1	0	0	0	0	1	0	0	0	1573	1087	38	3	747	3	BTN3A2	6	26373142	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	511290	26373142	144741925	317	117293											
ZNF184	7738	broad.mit.edu	37	chr6	27418997	27418997	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagatttcaaggcagtttcTaaatccactctgattcttca	5	9	5	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27418997	A	A	27418997	1	1	130	0	1	0	0	0	0	0	0	0	17877	1537	53	5		5	ZNF184	6	27418997	3'UTR	SNP	T	TCGA-44-6778-01A-11D-1855-08	1045855	27418997	143696070	318	117294											
OR2J2	26707	broad.mit.edu	37	chr6	29142241	29142241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagggcaagttcattgccCtcttttatactgttgtcaca	7	10	4	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29142241	A	A	29142241	3	1	130	1	0	0	0	0	1	0	0	0	11097	681	24	2	831	2	OR2J2	6	29142241	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1723244	29142241	141972826	319	117295											
OR12D2	26529	broad.mit.edu	37	chr6	29365229	29365229	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggtagttattcttttctaTgcacctgttcttttcaccta	5	9	4	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29365229	C	C	29365229	2	2	130	1	0	0	0	0	0	0	0	1	11025	1471	51	5		5	OR12D2	6	29365229	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	222988	29365229	141749838	320	117296											
ZFP57	346171	broad.mit.edu	37	chr6	29640680	29640680	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctgtgaggtgggccttcTggtgtctggagagataggat	17	6	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29640680	A	A	29640680	3	1	130	1	0	0	0	0	1	0	0	0	17777	1580	55	5	406	5	ZFP57	6	29640680	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	275451	29640680	141474387	321	117297											
TRIM26	7726	broad.mit.edu	37	chr6	30164347	30164347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccagttcggagatgacCagggccagccgggcaagctc	13	15	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30164347	A	A	30164347	2	1	130	1	0	0	0	0	0	0	0	1	16624	581	21	2		2	TRIM26	6	30164347	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	523667	30164347	140950720	322	117298											
CFB	629	broad.mit.edu	37	chr6	31911043	31911043	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatctgcggggtggggaacAtgtcagcaaacgcctctgac	13	12	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31911043	C	C	31911043	1	2	130	0	1	0	0	0	0	0	0	0	3308	217	8	5		5	CFB	6	31911043	5'Flank	SNP	A	TCGA-44-6778-01A-11D-1855-08	1746696	31911043	139204024	323	117299											
PPT2	9374	broad.mit.edu	37	chr6	32123764	32123764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actactggcatggtgagtggGgatgctgaactggggcttcc	16	8	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32123764	A	A	32123764	1	1	130	0	1	0	0	0	0	0	0	0	12513	1247	43	4		4	PPT2	6	32123764	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	212721	32123764	138991303	324	117300											
C6orf10	10665	broad.mit.edu	37	chr6	32293213	32293213	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggtggatgcagccgtgaaTgcaaggccacacaaggtgga	16	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32293213	A	A	32293213	1	1	130	0	1	0	0	0	0	0	0	0	2340	1479	51	5		5	C6orf10	6	32293213	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	169449	32293213	138821854	325	117301											
HLA-DQB1	3119	broad.mit.edu	37	chr6	32628032	32628032	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcagtgcagaagccctggaGaagagagaagagcattgatc	14	7	1	6			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32628032	C	C	32628032	1	2	130	0	1	0	0	0	0	0	0	0	7273	957	33	4		4	HLA-DQB1	6	32628032	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	334819	32628032	138487035	326	117302											
GRM4	2914	broad.mit.edu	37	chr6	34007948	34007948	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccactccctgccctccCacttactctaaggtgcaggt	6	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34007948	A	A	34007948	1	1	130	0	1	0	0	0	0	0	0	0	6865	609	21	2		2	GRM4	6	34007948	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1379916	34007948	137107119	327	117303											
C6orf64	55776	broad.mit.edu	37	chr6	39073161	39073161	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaatccatagccaatggtGaggaagaccacatcagaggt	10	9	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39073161	A	A	39073161	1	1	130	0	1	0	0	0	0	0	0	0	2393	1305	45	4		4	C6orf64	6	39073161	3'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	5065213	39073161	132041906	328	117304											
C6orf64	55776	broad.mit.edu	37	chr6	39073605	39073605	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagggtaatggagctgagatGatcaaaactaatctgaaaag	11	4	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39073605	A	A	39073605	1	1	130	0	1	0	0	0	0	0	0	0	2393	1305	45	4		4	C6orf64	6	39073605	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	444	39073605	132041462	329	117305											
LRFN2	57497	broad.mit.edu	37	chr6	40400624	40400625	+	Missense_Mutation	DNP	CC	AA	AA													cagggtcaggtccaccagccCcgtcatgttggcaaagtcct					rs139791683		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	40400625	AA	AA	40400624	3	1	130	1	0	0	0	0	1	0	0	0	9025	623	22	2	2148	2	LRFN2	6	40400624	Missense_Mutation	DNP	CC	TCGA-44-6778-01A-11D-1855-08	1327019	40400624	130714443	330	117306											
MRPS10	55173	broad.mit.edu	37	chr6	42185578	42185578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcaccgaacgctgtccGcgccgccatcttgccggtcc	10	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42185578	A	A	42185578	3	1	130	1	0	0	0	0	1	0	0	0	9915	1086	38	4	623	4	MRPS10	6	42185578	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1784954	42185578	128929489	331	117307											
SLC22A7	10864	broad.mit.edu	37	chr6	43272411	43272411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactccttcctccctagtgCcccaaccagtcttcaggagg	7	17	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43272411	A	A	43272411	3	1	130	1	0	0	0	0	1	0	0	0	14573	739	26	3	1633	3	SLC22A7	6	43272411	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1086833	43272411	127842656	332	117308											
GPR116	221395	broad.mit.edu	37	chr6	46856259	46856259	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaactgcaatgaaagcacaTgaaggctgagagaacttacc	10	9	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46856259	A	A	46856259	1	1	130	0	1	0	0	0	0	0	0	0	6698	1479	51	5		5	GPR116	6	46856259	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	3583848	46856259	124258808	333	117309											
GPR115	221393	broad.mit.edu	37	chr6	47678424	47678424	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acctgtcaaaatgtggaaatCctaattgggctcctgtctct	8	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47678424	T	T	47678424	1	4	130	0	1	0	0	0	0	0	0	0	6697	870	30	4		4	GPR115	6	47678424	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	822165	47678424	123436643	334	117310											
C6orf138	442213	broad.mit.edu	37	chr6	47976771	47976771	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatttgaatggctctggctGacttgacccgctgatctttg	11	9	2	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47976771	C	C	47976771	4	2	130	1	0	0	0	0	0	1	0	0	2355	1294	45	4	2042	4	C6orf138	6	47976771	Nonsense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	298347	47976771	123138296	335	117311											
PGK2	5232	broad.mit.edu	37	chr6	49754263	49754263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgccactttggctccaCcaagtatagccagaaagggt	10	11	1	1	rs137962561		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49754263	A	A	49754263	3	1	130	1	0	0	0	0	1	0	0	0	11886	507	18	3	619	3	PGK2	6	49754263	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1777492	49754263	121360804	336	117312											
PKHD1	5314	broad.mit.edu	37	chr6	51619626	51619626	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagatcctcacatggtggCccttgacttctttcacagtg	8	12	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51619626	T	T	51619626	3	4	130	1	0	0	0	0	1	0	0	0	12066	739	26	4	3558	4	PKHD1	6	51619626	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1865363	51619626	119495441	337	117313											
PKHD1	5314	broad.mit.edu	37	chr6	51918821	51918822	+	Intron	DNP	CC	AA	AA													tgaattcccaccacgcctccCcaccgattagctacctctcg							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	51918822	AA	AA	51918821	1	1	130	0	1	0	0	0	0	0	0	0	12066	638	22	2		2	PKHD1	6	51918821	Intron	DNP	CC	TCGA-44-6778-01A-11D-1855-08	299195	51918821	119196246	338	117314											
EFHC1	114327	broad.mit.edu	37	chr6	52374285	52374285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacaggaaggcagtgggcCcggtcgctcctccctggggc	18	13	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52374285	A	A	52374285	1	1	130	0	1	0	0	0	0	0	0	0	4986	638	22	2		2	EFHC1	6	52374285	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	455464	52374285	118740782	339	117315											
KLHL31	401265	broad.mit.edu	37	chr6	53519011	53519011	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacactgattaaaactttTggctggcatttccgtaagct	7	10	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53519011	G	G	53519011	3	3	130	1	0	0	0	0	1	0	0	0	8456	1821	63	5	852	5	KLHL31	6	53519011	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1144726	53519011	117596056	340	117316											
KLHL31	401265	broad.mit.edu	37	chr6	53519990	53519991	+	Frame_Shift_Ins	INS	-	A	A													tcaaagcattcagtttgtttINSagggggctatcttctacgat							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53519991	A	A	53519990	7	5	130	1	0	1	1	0	0	0	0	0	8456	1741	61	0	1831	0	KLHL31	6	53519990	Frame_Shift_Ins	INS	-	TCGA-44-6778-01A-11D-1855-08	979	53519990	117595077	341	117317											
DST	667	broad.mit.edu	37	chr6	56481510	56481510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagggtcaatgacacccCcactggcaatctgggcttcc	9	15	3	1	rs140152012	byFrequency	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56481510	A	A	56481510	1	1	130	0	1	0	0	0	0	0	0	0	4823	623	22	2		2	DST	6	56481510	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2961520	56481510	114633557	342	117318											
DST	667	broad.mit.edu	37	chr6	56496636	56496636	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagagttgatacataaggtCattaagagagttagtttttt	9	3	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56496636	A	A	56496636	1	1	130	0	1	0	0	0	0	0	0	0	4823	841	29	3		3	DST	6	56496636	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	15126	56496636	114618431	343	117319											
COL9A1	1297	broad.mit.edu	37	chr6	71012454	71012454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtcttcggtttctcacGcttgccctcttgtcttactc	7	14	5	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71012454	T	T	71012454	1	4	130	0	1	0	0	0	0	0	0	0	3739	1102	38	3		3	COL9A1	6	71012454	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	14515818	71012454	100102613	344	117320											
C6orf221	154288	broad.mit.edu	37	chr6	74072850	74072850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcatcccgcacgtccagGgtatgtcccaaatcttgatt	8	13	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74072850	T	T	74072850	3	4	130	1	0	0	0	0	1	0	0	0	2378	1232	43	2	208	2	C6orf221	6	74072850	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3060396	74072850	97042217	345	117321											
COL12A1	1303	broad.mit.edu	37	chr6	75860807	75860808	+	Intron	DNP	GC	CT	CT													cccaaaagaataattatttgGcccaaaataccagcagtgct							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	75860808	CT	CT	75860807	1	2	130	0	1	0	0	0	0	0	0	0	3701	1218	42	4		4	COL12A1	6	75860807	Intron	DNP	GC	TCGA-44-6778-01A-11D-1855-08	1787957	75860807	95254260	346	117322											
IMPG1	3617	broad.mit.edu	37	chr6	76660393	76660393	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaacactaccagctctcgGcccttgggggcaatggtcat	11	12	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76660393	T	T	76660393	2	4	130	1	0	0	0	0	0	0	0	1	7798	1190	42	3		3	IMPG1	6	76660393	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	799586	76660393	94454674	347	117323											
KIAA1009	22832	broad.mit.edu	37	chr6	84930830	84930830	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcactgtatctttcttcttCatctcttttttagattgtct	5	9	6	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84930830	T	T	84930830	3	4	130	1	0	0	0	0	1	0	0	0	8273	826	29	4	4194	4	KIAA1009	6	84930830	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	8270437	84930830	86184237	348	117324											
GRIK2	2898	broad.mit.edu	37	chr6	101847268	101847268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacacatgtattaagatttGgtaagattccccatctctct	5	11	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101847268	T	T	101847268	3	4	130	1	0	0	0	0	1	0	0	0	6840	1362	47	2	117	2	GRIK2	6	101847268	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	16916438	101847268	69267799	349	117325											
LIN28B	389421	broad.mit.edu	37	chr6	105405135	105405135	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggggcaacatggccgaaGgttaattttcttttctattg	11	7	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105405135	A	A	105405135	3	1	130	1	0	0	0	0	1	0	0	0	8879	1014	35	4	12	4	LIN28B	6	105405135	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3557867	105405135	65709932	350	117326											
REV3L	5980	broad.mit.edu	37	chr6	111694418	111694418	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatctaatccatgaggctgAgtctgtggtatgatgcttgt	12	6	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111694418	G	G	111694418	3	3	130	1	0	0	0	0	1	0	0	0	13348	304	11	5	4332	5	REV3L	6	111694418	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	6289283	111694418	59420649	351	117327											
WISP3	8838	broad.mit.edu	37	chr6	112382465	112382466	+	Frame_Shift_Ins	INS	-	T	T													gactactcagtagacaggccINStaggtacgagactggagtgt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112382466	T	T	112382465	7	5	130	1	0	1	1	0	0	0	0	0	17501	681	24	0	380	0	WISP3	6	112382465	Frame_Shift_Ins	INS	-	TCGA-44-6778-01A-11D-1855-08	688047	112382465	58732602	352	117328											
FAM26F	441168	broad.mit.edu	37	chr6	116779690	116779690	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcactgctgaccagctGggcgatgaagctgggtgtct	16	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116779690	T	T	116779690	1	4	130	0	1	0	0	0	0	0	0	0	5602	1363	47	2		2	FAM26F	6	116779690	5'Flank	SNP	G	TCGA-44-6778-01A-11D-1855-08	4397225	116779690	54335377	353	117329											
C6orf174	387104	broad.mit.edu	37	chr6	127804197	127804197	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaattttatgtttttaagTattctagtctcaaacgacaa	4	6	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127804197	A	A	127804197	1	1	130	0	1	0	0	0	0	0	0	0	2368	1653	57	5		5	C6orf174	6	127804197	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	11024507	127804197	43310870	354	117330											
PTPRK	5796	broad.mit.edu	37	chr6	128294963	128294963	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgcaccatcagataacCttcctgtggctgtagaggga	11	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128294963	T	T	128294963	3	4	130	1	0	0	0	0	1	0	0	0	12913	681	24	4	355	4	PTPRK	6	128294963	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	490766	128294963	42820104	355	117331											
LAMA2	3908	broad.mit.edu	37	chr6	129714272	129714272	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatggagaaggatctcCgggaaaaactggctgactac	12	7	1	3	rs138695453	byFrequency	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129714272	A	A	129714272	2	1	130	1	0	0	0	0	0	0	0	1	8678	643	23	1		1	LAMA2	6	129714272	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1419309	129714272	41400795	356	117332											
LAMA2	3908	broad.mit.edu	37	chr6	129714294	129714294	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaactggctgactacaAaaacaaagttgatgatgctt	9	6	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129714294	G	G	129714294	3	3	130	1	0	0	0	0	1	0	0	0	8678	14	1	5	5485	5	LAMA2	6	129714294	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	22	129714294	41400773	357	117333											
L3MBTL3	84456	broad.mit.edu	37	chr6	130407513	130407513	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaatcataggaataagcAaaataattggctgtgcatct	8	5	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130407513	G	G	130407513	1	3	130	0	1	0	0	0	0	0	0	0	8665	145	5	5		5	L3MBTL3	6	130407513	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	693219	130407513	40707554	358	117334											
TMEM200A	114801	broad.mit.edu	37	chr6	130761691	130761691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaagaagcccatcaggCgccggccccgggcagatgtt	14	12	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130761691	A	A	130761691	3	1	130	1	0	0	0	0	1	0	0	0	16246	768	27	3	126	3	TMEM200A	6	130761691	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	354178	130761691	40353376	359	117335											
MED23	9439	broad.mit.edu	37	chr6	131944607	131944607	+	Intron	DEL	A	-	-													ggattcacaaaccagcctatAaaaaaagaaatagccattcc							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131944607	-	-	131944607	6	5	130	0	1	1	0	1	0	0	0	0	9534	377	13	0		0	MED23	6	131944607	Intron	DEL	A	TCGA-44-6778-01A-11D-1855-08	1182916	131944607	39170460	360	117336											
SGK1	6446	broad.mit.edu	37	chr6	134618433	134618433	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcttgacgttcatcaGctcctggtacacacgcagct	10	14	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134618433	C	C	134618433	1	2	130	0	1	0	0	0	0	0	0	0	14320	986	34	4		4	SGK1	6	134618433	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2673826	134618433	36496634	361	117337											
BCLAF1	9774	broad.mit.edu	37	chr6	136599263	136599263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagtattttttgcagaGtgaactgtactgagcatggg	14	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136599263	T	T	136599263	3	4	130	1	0	0	0	0	1	0	0	0	1388	1020	36	3	2046	3	BCLAF1	6	136599263	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1980830	136599263	34515804	362	117338											
GPR126	57211	broad.mit.edu	37	chr6	142689054	142689054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctacatcagaggtatgtAaaccaaaggcaacgccaacc	8	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142689054	T	T	142689054	1	4	130	0	1	0	0	0	0	0	0	0	6705	377	13	5		5	GPR126	6	142689054	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	6089791	142689054	28426013	363	117339											
SYNE1	23345	broad.mit.edu	37	chr6	152443811	152443811	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggagccaccttttgtggaCctgagagaagaatggacata	12	8	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152443811	T	T	152443811	2	4	130	1	0	0	0	0	0	0	0	1	15564	521	18	4		4	SYNE1	6	152443811	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	9754757	152443811	18671256	364	117340											
TIAM2	26230	broad.mit.edu	37	chr6	155485654	155485654	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttaccgaacccaaagagtCtccttgcagccgccagccgc	9	16	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155485654	A	A	155485654	3	1	130	1	0	0	0	0	1	0	0	0	16014	913	32	3	2152	3	TIAM2	6	155485654	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	3041843	155485654	15629413	365	117341											
TCP1	6950	broad.mit.edu	37	chr6	160200861	160200861	+	Intron	DEL	A	-	-													taggtgacttcacaaaagggAaaaaaaaaattgaagtccac					rs147097290	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160200861	-	-	160200861	6	5	130	0	1	1	0	1	0	0	0	0	15831	261	9	0		0	TCP1	6	160200861	Intron	DEL	A	TCGA-44-6778-01A-11D-1855-08	4715207	160200861	10914206	366	117342											
SLC22A2	6582	broad.mit.edu	37	chr6	160664593	160664593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataagactccaacttcacCtgaaacttaccaccaggtat	5	12	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160664593	A	A	160664593	1	1	130	0	1	0	0	0	0	0	0	0	14564	696	24	2		2	SLC22A2	6	160664593	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	463732	160664593	10450474	367	117343											
PLG	5340	broad.mit.edu	37	chr6	161173110	161173110	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctcctgaatgtgttttgGgtgcagttgccatttctttc	9	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161173110	T	T	161173110	1	4	130	0	1	0	0	0	0	0	0	0	12181	1247	43	2		2	PLG	6	161173110	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	508517	161173110	9941957	368	117344											
DLL1	28514	broad.mit.edu	37	chr6	170597274	170597274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagccccgtccctgcgCgcggtccgtgttcgtggacg	15	15	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170597274	A	A	170597274	1	1	130	0	1	0	0	0	0	0	0	0	4606	783	27	3		3	DLL1	6	170597274	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	9424164	170597274	517793	369	117345											
INTS1	26173	broad.mit.edu	37	chr7	1520047	1520047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctatgggctgctctgggCtgctctttggtttgggtgcc	16	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1520047	A	A	1520047	3	1	130	1	0	0	0	0	1	0	0	0	7845	797	28	3	2668	3	INTS1	7	1520047	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08		1520047	157618616	370	117346											
DGKB	1607	broad.mit.edu	37	chr7	14741226	14741226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtgtgccttctgtggtAataactacaaatttattcat	6	6	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14741226	T	T	14741226	1	4	130	0	1	0	0	0	0	0	0	0	4506	377	13	5		5	DGKB	7	14741226	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	13221179	14741226	144397437	371	117347											
ITGB8	3696	broad.mit.edu	37	chr7	20449351	20449351	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgatactacaatggaatAgtaataaaattaagtcctca	7	5	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20449351	T	T	20449351	3	4	130	1	0	0	0	0	1	0	0	0	7971	420	15	5	2187	5	ITGB8	7	20449351	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	5708125	20449351	138689312	372	117348											
DNAH11	8701	broad.mit.edu	37	chr7	21840846	21840846	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaggtgaaccaaaccaAcaaaaccatcaaattagcta	6	9	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21840846	G	G	21840846	3	3	130	1	0	0	0	0	1	0	0	0	4639	43	2	5	10386	5	DNAH11	7	21840846	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	1391495	21840846	137297817	373	117349											
CDCA7L	55536	broad.mit.edu	37	chr7	21947748	21947748	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccctccgtgaagcctcacCatggctttgttctccttgat	8	15	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21947748	A	A	21947748	3	1	130	1	0	0	0	0	1	0	0	0	3121	608	21	2	711	2	CDCA7L	7	21947748	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	106902	21947748	137190915	374	117350											
IGF2BP3	10643	broad.mit.edu	37	chr7	23391222	23391222	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgaaagttgaaaaggGgcaggggtgggaaaaggaat	17	3	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23391222	C	C	23391222	1	2	130	0	1	0	0	0	0	0	0	0	7645	1247	43	4		4	IGF2BP3	7	23391222	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1443474	23391222	135747441	375	117351											
SCRN1	9805	broad.mit.edu	37	chr7	29966031	29966031	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgacctcgcccgcccgcCtccgcctccgcctctgtggc	10	23	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29966031	T	T	29966031	1	4	130	0	1	0	0	0	0	0	0	0	14051	696	24	4		4	SCRN1	7	29966031	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	6574809	29966031	129172632	376	117352											
FKBP9	11328	broad.mit.edu	37	chr7	33014220	33014220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctttccctaccctttgGgccttcagctatgacagaga	7	13	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33014220	T	T	33014220	1	4	130	0	1	0	0	0	0	0	0	0	5972	1247	43	2		2	FKBP9	7	33014220	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3048189	33014220	126124443	377	117353											
HECW1	23072	broad.mit.edu	37	chr7	43477436	43477437	+	Intron	DNP	CC	AA	AA													cagaagcatcttgtcgctgcCcctcatttactgaataaaca							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	43477437	AA	AA	43477436	1	1	130	0	1	0	0	0	0	0	0	0	7109	638	22	2		2	HECW1	7	43477436	Intron	DNP	CC	TCGA-44-6778-01A-11D-1855-08	10463216	43477436	115661227	378	117354											
HECW1	23072	broad.mit.edu	37	chr7	43483856	43483856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaccgagcctgagtcagCccaaattcaggacagcccca	10	14	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43483856	A	A	43483856	3	1	130	1	0	0	0	0	1	0	0	0	7109	739	26	3	1119	3	HECW1	7	43483856	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	6420	43483856	115654807	379	117355											
AEBP1	165	broad.mit.edu	37	chr7	44150526	44150526	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccagacctttcatgggaaCgtggacaaggacacacccgt	10	14	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44150526	G	G	44150526	3	3	130	1	0	0	0	0	1	0	0	0	349	535	19	4	1550	4	AEBP1	7	44150526	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	666670	44150526	114988137	380	117356											
TBRG4	9238	broad.mit.edu	37	chr7	45141438	45141438	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcacccagcacccagccaTactgcgtggccacctcgagg	9	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45141438	C	C	45141438	3	2	130	1	0	0	0	0	1	0	0	0	15771	1406	49	5	358	5	TBRG4	7	45141438	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	990912	45141438	113997225	381	117357											
TNS3	64759	broad.mit.edu	37	chr7	47453485	47453485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagggtcagctgcagttccCtgagccgtccaggtcccaca	12	14	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47453485	A	A	47453485	1	1	130	0	1	0	0	0	0	0	0	0	16467	696	24	2		2	TNS3	7	47453485	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2312047	47453485	111685178	382	117358											
SUN3	256979	broad.mit.edu	37	chr7	48065433	48065433	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcaccaggcagacataacCtgtggaatggttttaaggat	10	8	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48065433	T	T	48065433	1	4	130	0	1	0	0	0	0	0	0	0	15511	696	24	4		4	SUN3	7	48065433	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	611948	48065433	111073230	383	117359											
COBL	23242	broad.mit.edu	37	chr7	51111474	51111474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacatcagtctgtcggcCccgctctaaaatttgggatt	10	10	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51111474	A	A	51111474	1	1	130	0	1	0	0	0	0	0	0	0	3685	638	22	2		2	COBL	7	51111474	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	3046041	51111474	108027189	384	117360											
SEPT14	346288	broad.mit.edu	37	chr7	55912167	55912167	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatggcaaaggaagtcaaaTtccttgaaataagaaaacct	7	7	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55912167	C	C	55912167	1	2	130	0	1	0	0	0	0	0	0	0	14176	1508	52	5		5	SEPT14	7	55912167	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	4800693	55912167	103226496	385	117361											
ZNF273	10793	broad.mit.edu	37	chr7	64378058	64378074	+	Frame_Shift_Del	DEL	GATAACTACAGAAACCT	-	-													tgtataggaatgtgatgttaGataactacagaaacctggtc							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64378074	-	-	64378058	7	5	130	1	0	1	0	1	0	0	0	0	17934	942	33	0	208	0	ZNF273	7	64378058	Frame_Shift_Del	DEL	GATAACTACAGAAACCT	TCGA-44-6778-01A-11D-1855-08	8465891	64378058	94760605	386	117362											
WBSCR17	64409	broad.mit.edu	37	chr7	71177028	71177028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatcatgaacaagggcaCgggacgctgcctggaggtgg	16	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71177028	A	A	71177028	3	1	130	1	0	0	0	0	1	0	0	0	17391	536	19	3	1736	3	WBSCR17	7	71177028	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	6798970	71177028	87961635	387	117363											
TYW1B	441250	broad.mit.edu	37	chr7	72234128	72234128	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcagcagtttggcatgGtaagcgaggatgctttcatc	13	8	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72234128	A	A	72234128	1	1	130	0	1	0	0	0	0	0	0	0	16945	1276	44	4		4	TYW1B	7	72234128	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1057100	72234128	86904535	388	117364											
EIF4H	7458	broad.mit.edu	37	chr7	73588723	73588723	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagacggcaaatggcggacTtcgacacctacgacgatcgg	14	11	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73588723	G	G	73588723	3	3	130	1	0	0	0	0	1	0	0	0	5081	1609	56	5	12	5	EIF4H	7	73588723	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1354595	73588723	85549940	389	117365											
PCLO	27445	broad.mit.edu	37	chr7	82764221	82764221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtttggccagcggtaggtCgtgggccagggggtgttggt	20	7	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82764221	A	A	82764221	3	1	130	1	0	0	0	0	1	0	0	0	11677	884	31	3	12892	3	PCLO	7	82764221	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	9175498	82764221	76374442	390	117366											
GRM3	2913	broad.mit.edu	37	chr7	86468553	86468553	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actacatcaggtgggaagacGcctgggccattggcccagtc	13	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86468553	A	A	86468553	3	1	130	1	0	0	0	0	1	0	0	0	6864	1087	38	4	1733	4	GRM3	7	86468553	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3704332	86468553	72670110	391	117367											
GTPBP10	85865	broad.mit.edu	37	chr7	90001556	90001556	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacgcatgtaagtgtaatttGattgtacattttaatgagtg	9	3	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90001556	T	T	90001556	1	4	130	0	1	0	0	0	0	0	0	0	6944	1305	45	3		3	GTPBP10	7	90001556	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3533003	90001556	69137107	392	117368											
ANKIB1	54467	broad.mit.edu	37	chr7	91980363	91980363	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggatatcatagaaagtgtAgtttcaaaggagatggacaa	12	3	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91980363	C	C	91980363	2	2	130	1	0	0	0	0	0	0	0	1	630	407	15	5		5	ANKIB1	7	91980363	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	1978807	91980363	67158300	393	117369											
SAMD9L	219285	broad.mit.edu	37	chr7	92764824	92764824	+	Frame_Shift_Del	DEL	C	-	-													attgttcaggttttagcttaCcctttttcttgtgtttagca							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92764824	-	-	92764824	7	5	130	1	0	1	0	1	0	0	0	0	13938	507	18	0	4297	0	SAMD9L	7	92764824	Frame_Shift_Del	DEL	C	TCGA-44-6778-01A-11D-1855-08	784461	92764824	66373839	394	117370											
PPP1R9A	55607	broad.mit.edu	37	chr7	94540564	94540564	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcttctgcatccagttgtgGaaaagaagtacctgaagatt	10	7	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94540564	A	A	94540564	3	1	130	1	0	0	0	0	1	0	0	0	12479	1174	41	4	1141	4	PPP1R9A	7	94540564	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1775740	94540564	64598099	395	117371											
PPP1R9A	55607	broad.mit.edu	37	chr7	94540577	94540577	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgtggaaaagaagtaccTgaagattcaaataattttga	9	3	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94540577	A	A	94540577	2	1	130	1	0	0	0	0	0	0	0	1	12479	1567	55	5		5	PPP1R9A	7	94540577	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	13	94540577	64598086	396	117372											
PON2	5445	broad.mit.edu	37	chr7	95045525	95045525	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacccttgtatctcctctgcTgaatttggggaaggaagaag	11	8	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95045525	C	C	95045525	1	2	130	0	1	0	0	0	0	0	0	0	12344	1595	55	5		5	PON2	7	95045525	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	504948	95045525	64093138	397	117373											
CYP3A5	1577	broad.mit.edu	37	chr7	99283004	99283004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaattcagggaggtaaagCaagacaaagatgttccaagg	13	5	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99283004	G	G	99283004	1	3	130	0	1	0	0	0	0	0	0	0	4213	725	25	4		4	CYP3A5	7	99283004	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4237479	99283004	59855659	398	117374											
PILRB	29990	broad.mit.edu	37	chr7	99956740	99956740	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacctgccttgcccaccgCagtgagggttttggtgacca	12	13	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99956740	T	T	99956740	1	4	130	0	1	0	0	0	0	0	0	0	12021	725	25	4		4	PILRB	7	99956740	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	673736	99956740	59181923	399	117375											
ZAN	7455	broad.mit.edu	37	chr7	100377142	100377142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgagtggaaactgcagggCggccgacctccgcagggcgc	16	15	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100377142	A	A	100377142	3	1	130	1	0	0	0	0	1	0	0	0	17640	768	27	3	6525	3	ZAN	7	100377142	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	420402	100377142	58761521	400	117376											
MUC17	140453	broad.mit.edu	37	chr7	100682138	100682138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccctttccacaactcctGttgacaccagcacacctatg	5	17	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100682138	T	T	100682138	3	4	130	1	0	0	0	0	1	0	0	0	10068	1377	48	3	7451	3	MUC17	7	100682138	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	304996	100682138	58456525	401	117377											
MUC17	140453	broad.mit.edu	37	chr7	100692509	100692509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgtgctatgatgctgcGggacaggatcatcccctggt	14	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100692509	T	T	100692509	1	4	130	0	1	0	0	0	0	0	0	0	10068	1131	39	1		1	MUC17	7	100692509	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	10371	100692509	58446154	402	117378											
RELN	5649	broad.mit.edu	37	chr7	103137241	103137241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataacaaatataccaacataGcaatatatctagaatctcct	2	9	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103137241	A	A	103137241	1	1	130	0	1	0	0	0	0	0	0	0	13328	986	34	4		4	RELN	7	103137241	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2444732	103137241	56001422	403	117379											
RELN	5649	broad.mit.edu	37	chr7	103143606	103143606	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agataattccaactcacaccGaagtcagtagaatactgcac	6	11	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103143606	C	C	103143606	3	2	130	1	0	0	0	0	1	0	0	0	13328	1049	37	4	2092	4	RELN	7	103143606	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	6365	103143606	55995057	404	117380											
SRPK2	6733	broad.mit.edu	37	chr7	104782778	104782778	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcttcatcgtccagttgcTgctccagtgagaatgggcca	10	12	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104782778	A	A	104782778	3	1	130	1	0	0	0	0	1	0	0	0	15278	1580	55	5	903	5	SRPK2	7	104782778	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1639172	104782778	54355885	405	117381											
SLC26A4	5172	broad.mit.edu	37	chr7	107314662	107314662	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgttctgagcatggccCccgacgaacactttctcgta	9	13	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107314662	T	T	107314662	3	4	130	1	0	0	0	0	1	0	0	0	14633	623	22	4	483	4	SLC26A4	7	107314662	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2531884	107314662	51824001	406	117382											
LAMB1	3912	broad.mit.edu	37	chr7	107642144	107642144	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagccgtagctgaactcGggttcctgagcgcgcactcg	14	14	0	2	rs141455945		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107642144	T	T	107642144	2	4	130	1	0	0	0	0	0	0	0	1	8682	1103	39	1		1	LAMB1	7	107642144	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	327482	107642144	51496519	407	117383											
LAMB4	22798	broad.mit.edu	37	chr7	107745144	107745144	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaatgggaaatgaaatAccaggtcctggtacctctct	8	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107745144	T	T	107745144	1	4	130	0	1	0	0	0	0	0	0	0	8685	406	14	5		5	LAMB4	7	107745144	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	103000	107745144	51393519	408	117384											
NRCAM	4897	broad.mit.edu	37	chr7	107824974	107824974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagacagcttcagctggGctgtggtctgtgttccagaa	14	8	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107824974	T	T	107824974	3	4	130	1	0	0	0	0	1	0	0	0	10739	1203	42	3	1876	3	NRCAM	7	107824974	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	79830	107824974	51313689	409	117385											
WNT2	7472	broad.mit.edu	37	chr7	116918433	116918433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacggcctgctgtacccaGggagcctggaagacaagcca	12	14	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116918433	T	T	116918433	3	4	130	1	0	0	0	0	1	0	0	0	17513	991	35	2	227	2	WNT2	7	116918433	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	9093459	116918433	42220230	410	117386											
METTL2B	55798	broad.mit.edu	37	chr7	128141918	128141918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaactgacaatgtaccGggtttggattcagtgcaaat	11	7	1	1	rs149666702		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128141918	T	T	128141918	3	4	130	1	0	0	0	0	1	0	0	0	9593	1116	39	1	1119	1	METTL2B	7	128141918	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	11223485	128141918	30996745	411	117387											
CPA5	93979	broad.mit.edu	37	chr7	129986302	129986302	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgcccaaggaaagcccCtgaagctcaccaggaggaag	13	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129986302	T	T	129986302	1	4	130	0	1	0	0	0	0	0	0	0	3825	696	24	4		4	CPA5	7	129986302	5'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	1844384	129986302	29152361	412	117388											
PLXNA4	91584	broad.mit.edu	37	chr7	131817987	131817987	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatggaaatagggagaagcTgaagtcgtgcatacggagta	16	4	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131817987	C	C	131817987	1	2	130	0	1	0	0	0	0	0	0	0	12217	1595	55	5		5	PLXNA4	7	131817987	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1831685	131817987	27320676	413	117389											
PLXNA4	91584	broad.mit.edu	37	chr7	131870229	131870229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatggagatcgcctggagGgcaggaagacagagcactgg	18	7	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131870229	T	T	131870229	1	4	130	0	1	0	0	0	0	0	0	0	12217	1247	43	2		2	PLXNA4	7	131870229	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	52242	131870229	27268434	414	117390											
LUZP6	767558	broad.mit.edu	37	chr7	135635328	135635328	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaatagaaaaagcaatacTattagcaattgacctcacct	5	8	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135635328	C	C	135635328	1	2	130	0	1	0	0	0	0	0	0	0	9176	1537	53	5		5	LUZP6	7	135635328	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	3765099	135635328	23503335	415	117391											
AKR1D1	6718	broad.mit.edu	37	chr7	137801497	137801497	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgtgaaaatgaagagagAgggttttaccatcctgagaa	12	4	0	6			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137801497	T	T	137801497	1	4	130	0	1	0	0	0	0	0	0	0	473	319	11	5		5	AKR1D1	7	137801497	3'UTR	SNP	A	TCGA-44-6778-01A-11D-1855-08	2166169	137801497	21337166	416	117392											
WEE2	494551	broad.mit.edu	37	chr7	141429403	141429403	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgacactggggtctctggGacccacacaggatcaagaag	14	10	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141429403	A	A	141429403	2	1	130	1	0	0	0	0	0	0	0	1	17472	1161	41	4		4	WEE2	7	141429403	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	3627906	141429403	17709260	417	117393											
EPHB6	2051	broad.mit.edu	37	chr7	142562205	142562205	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacgtggccttccaggacaCgggggcctgcctggccctgg	15	15	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142562205	T	T	142562205	3	4	130	1	0	0	0	0	1	0	0	0	5220	536	19	4	657	4	EPHB6	7	142562205	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1132802	142562205	16576458	418	117394											
OR2A12	346525	broad.mit.edu	37	chr7	143792515	143792515	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacttttttgtatttggcGtttgctattacagagtgtct	9	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143792515	A	A	143792515	2	1	130	1	0	0	0	0	0	0	0	1	11069	1132	40	4		4	OR2A12	7	143792515	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1230310	143792515	15346148	419	117395											
CNTNAP2	26047	broad.mit.edu	37	chr7	148112699	148112699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaagcaaaaaggaatgGctcatttgaggggtggctac	14	5	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148112699	T	T	148112699	3	4	130	1	0	0	0	0	1	0	0	0	3679	1212	42	3	4081	3	CNTNAP2	7	148112699	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4320184	148112699	11025964	420	117396											
SSPO	23145	broad.mit.edu	37	chr7	149485870	149485870	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtcaatggcattgtggGggtgacggtggccactgtga	18	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149485870	T	T	149485870	2	4	130	1	0	0	0	0	0	0	0	1	15307	1219	43	2		2	SSPO	7	149485870	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1373171	149485870	9652793	421	117397											
GIMAP6	474344	broad.mit.edu	37	chr7	150324721	150324721	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctggagactgggaagcaCtccatgggatggaaagagaa	15	7	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150324721	A	A	150324721	1	1	130	0	1	0	0	0	0	0	0	0	6447	580	20	3		3	GIMAP6	7	150324721	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	838851	150324721	8813942	422	117398											
MLL3	58508	broad.mit.edu	37	chr7	151879742	151879742	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaaactaccatcatggGgggaaaaagcaacagaaagt	11	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151879742	A	A	151879742	1	1	130	0	1	0	0	0	0	0	0	0	9715	1247	43	4		4	MLL3	7	151879742	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1555021	151879742	7258921	423	117399											
DPP6	1804	broad.mit.edu	37	chr7	154585871	154585871	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgggcgcagaacgtgtccAtcctcaccctctgcgacgcc	10	18	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154585871	G	G	154585871	3	3	130	1	0	0	0	0	1	0	0	0	4770	217	8	5	1377	5	DPP6	7	154585871	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	2706129	154585871	4552792	424	117400											
INSIG1	3638	broad.mit.edu	37	chr7	155094329	155094329	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtagcagttacaaccaaacAaatatgaacattcgtaacat	5	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155094329	T	T	155094329	1	4	130	0	1	0	0	0	0	0	0	0	7835	145	5	5		5	INSIG1	7	155094329	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	508458	155094329	4044334	425	117401											
UBE3C	9690	broad.mit.edu	37	chr7	156974683	156974683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatattaaaatggttaacttGgctaatttagaagagtagat	9	2	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156974683	T	T	156974683	1	4	130	0	1	0	0	0	0	0	0	0	17007	1363	47	2		2	UBE3C	7	156974683	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1880354	156974683	2163980	426	117402											
CSMD1	64478	broad.mit.edu	37	chr8	2799909	2799909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaatataaaatacatgtgCatgtgagcacgagagcatgc	10	6	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2799909	A	A	2799909	1	1	130	0	1	0	0	0	0	0	0	0	3978	725	25	3		3	CSMD1	8	2799909	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08		2799909	143564113	427	117403											
PRSS55	203074	broad.mit.edu	37	chr8	10383193	10383193	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggagtggctatcctagGcagggctaggggagcccacc	17	11	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10383193	A	A	10383193	3	1	130	1	0	0	0	0	1	0	0	0	12740	1203	42	4	100	4	PRSS55	8	10383193	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	7583284	10383193	135980829	428	117404											
RP1L1	94137	broad.mit.edu	37	chr8	10467247	10467247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtctcgctgagatgactaGggggctctgtgggttcctct	14	11	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467247	T	T	10467247	3	4	130	1	0	0	0	0	1	0	0	0	13644	1000	35	2	2845	2	RP1L1	8	10467247	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	84054	10467247	135896775	429	117405											
LONRF1	91694	broad.mit.edu	37	chr8	12586807	12586807	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcacagtggggtaggccaTagtgcaaacaaatattggaa	13	6	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12586807	C	C	12586807	3	2	130	1	0	0	0	0	1	0	0	0	8981	1406	49	5	614	5	LONRF1	8	12586807	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	2119560	12586807	133777215	430	117406											
DLC1	10395	broad.mit.edu	37	chr8	13357525	13357525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcagaattaaaaggctgtCccatccagtgggtcacatgt	9	10	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13357525	A	A	13357525	3	1	130	1	0	0	0	0	1	0	0	0	4590	855	30	3	4683	3	DLC1	8	13357525	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	770718	13357525	133006497	431	117407											
MTUS1	57509	broad.mit.edu	37	chr8	17512183	17512183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagttgtcaaactgtaagCaacaaacaaaaccgtggttt	7	7	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17512183	A	A	17512183	1	1	130	0	1	0	0	0	0	0	0	0	10059	725	25	3		3	MTUS1	8	17512183	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4154658	17512183	128851839	432	117408											
LPL	4023	broad.mit.edu	37	chr8	19805737	19805737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaatttgccctaaggacCcctgaagacacagctgagga	10	10	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19805737	A	A	19805737	2	1	130	1	0	0	0	0	0	0	0	1	9008	610	22	2		2	LPL	8	19805737	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	2293554	19805737	126558285	433	117409											
NUDT18	79873	broad.mit.edu	37	chr8	21965372	21965372	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcagcctgcagggactcCgcatcggcctccttggaagt	13	14	0	0	rs34725565	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21965372	A	A	21965372	2	1	130	1	0	0	0	0	0	0	0	1	10830	639	23	1		1	NUDT18	8	21965372	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	2159635	21965372	124398650	434	117410											
PIWIL2	55124	broad.mit.edu	37	chr8	22163627	22163627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacgttccaactctgatGttggcttgcattgtaacctg	9	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22163627	T	T	22163627	1	4	130	0	1	0	0	0	0	0	0	0	12053	1392	48	3		3	PIWIL2	8	22163627	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	198255	22163627	124200395	435	117411											
ENTPD4	9583	broad.mit.edu	37	chr8	23297538	23297538	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggacaaaaatgtctgcttcTgcacttcccaaggacccttc	8	13	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23297538	A	A	23297538	1	1	130	0	1	0	0	0	0	0	0	0	5183	1595	55	5		5	ENTPD4	8	23297538	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1133911	23297538	123066484	436	117412											
DOCK5	80005	broad.mit.edu	37	chr8	25220531	25220531	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactatgaacgtaacccagTtttcccccaaccactcctct	4	16	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25220531	C	C	25220531	1	2	130	0	1	0	0	0	0	0	0	0	4730	1740	60	5		5	DOCK5	8	25220531	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1922993	25220531	121143491	437	117413											
CHRNA2	1135	broad.mit.edu	37	chr8	27320796	27320796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgtagggggtggcagagCtccacgggtggtgggggccg	23	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27320796	A	A	27320796	3	1	130	1	0	0	0	0	1	0	0	0	3414	796	28	3	433	3	CHRNA2	8	27320796	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2100265	27320796	119043226	438	117414											
CLU	1191	broad.mit.edu	37	chr8	27462494	27462494	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgggctatggaagtggatgTccatggcctgctgagcctcg	15	11	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462494	A	A	27462494	3	1	130	1	0	0	0	0	1	0	0	0	3600	1667	58	5	593	5	CLU	8	27462494	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	141698	27462494	118901528	439	117415											
INTS9	55756	broad.mit.edu	37	chr8	28654036	28654036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaagatagatcatccaaCgtaagatgagagacggttgc	11	7	1	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28654036	A	A	28654036	1	1	130	0	1	0	0	0	0	0	0	0	7855	551	19	3		3	INTS9	8	28654036	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1191542	28654036	117709986	440	117416											
NRG1	3084	broad.mit.edu	37	chr8	32463065	32463065	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatactgacaccactttgGtcctgatcttataggaagtc	7	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32463065	A	A	32463065	1	1	130	0	1	0	0	0	0	0	0	0	10742	1276	44	4		4	NRG1	8	32463065	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3809029	32463065	113900957	441	117417											
GPR124	25960	broad.mit.edu	37	chr8	37691586	37691586	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcctgcagccgcatcgtGggtgccctggagcgcattgg	16	12	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37691586	T	T	37691586	2	4	130	1	0	0	0	0	0	0	0	1	6703	1335	47	2		2	GPR124	8	37691586	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	5228521	37691586	108672436	442	117418											
EIF4EBP1	1978	broad.mit.edu	37	chr8	37917401	37917401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccattgttgacctggccCtctgtcccctctctccccag	6	20	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37917401	A	A	37917401	1	1	130	0	1	0	0	0	0	0	0	0	5074	696	24	2		2	EIF4EBP1	8	37917401	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	225815	37917401	108446621	443	117419											
WHSC1L1	54904	broad.mit.edu	37	chr8	38172084	38172084	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaagtgatgggaacaagaTgtcctaggagaggttgtcag	14	4	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38172084	C	C	38172084	1	2	130	0	1	0	0	0	0	0	0	0	17490	1479	51	5		5	WHSC1L1	8	38172084	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	254683	38172084	108191938	444	117420											
ADAM18	8749	broad.mit.edu	37	chr8	39442795	39442795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacattttcttactgcagGttctgaaggaatatttctgc	7	8	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39442795	T	T	39442795	3	4	130	1	0	0	0	0	1	0	0	0	239	1275	44	3	62	3	ADAM18	8	39442795	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1270711	39442795	106921227	445	117421											
SFRP1	6422	broad.mit.edu	37	chr8	41122771	41122771	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccttgtttttcttgtccCacttgtggatggccgtcagc	9	12	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41122771	T	T	41122771	4	4	130	1	0	0	0	0	0	1	0	0	14274	595	21	4	88	4	SFRP1	8	41122771	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1679976	41122771	105241251	446	117422											
ANK1	286	broad.mit.edu	37	chr8	41513275	41513275	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtcgaggtgtgatcctGggagacacaaagagagaagg	18	5	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41513275	A	A	41513275	1	1	130	0	1	0	0	0	0	0	0	0	620	1363	47	4		4	ANK1	8	41513275	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	390504	41513275	104850747	447	117423											
ANK1	286	broad.mit.edu	37	chr8	41522546	41522546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacgaaagtccacatcctcGcctcctcaccagcccggtcc	7	19	1	1	rs138948238	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41522546	T	T	41522546	1	4	130	0	1	0	0	0	0	0	0	0	620	1102	38	3		3	ANK1	8	41522546	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	9271	41522546	104841476	448	117424											
ANK1	286	broad.mit.edu	37	chr8	41571699	41571699	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggctgtgcggggagccgCcccggggaagcagcagcttg	19	12	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41571699	G	G	41571699	3	3	130	1	0	0	0	0	1	0	0	0	620	739	26	4	4332	4	ANK1	8	41571699	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	49153	41571699	104792323	449	117425											
PLAT	5327	broad.mit.edu	37	chr8	42038129	42038129	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggcagcctgccaggggtGggaggcgatgtcggcgaaga	20	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42038129	A	A	42038129	3	1	130	1	0	0	0	0	1	0	0	0	12116	1348	47	4	744	4	PLAT	8	42038129	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	466430	42038129	104325893	450	117426											
NPBWR1	2831	broad.mit.edu	37	chr8	53852566	53852566	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgactctggcgccgctgccGgcgccgctggcggtggctgt	17	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53852566	A	A	53852566	2	1	130	1	0	0	0	0	0	0	0	1	10663	1103	39	4		4	NPBWR1	8	53852566	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	11814437	53852566	92511456	451	117427											
MOS	4342	broad.mit.edu	37	chr8	57025763	57025763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaaggaataaatgtcgGctttaggcgtcacgccctct	11	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57025763	T	T	57025763	3	4	130	1	0	0	0	0	1	0	0	0	9806	1203	42	3	264	3	MOS	8	57025763	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3173197	57025763	89338259	452	117428											
PENK	5179	broad.mit.edu	37	chr8	57358364	57358364	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgcaacactcgccgcgcGcaacactcaccaggaagttg	11	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57358364	A	A	57358364	1	1	130	0	1	0	0	0	0	0	0	0	11821	1102	38	4		4	PENK	8	57358364	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	332601	57358364	89005658	453	117429											
TOX	9760	broad.mit.edu	37	chr8	60031374	60031374	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaagccggccccgccgcggCccggccaccgccgctcccct	11	25	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60031374	G	G	60031374	1	3	130	0	1	0	0	0	0	0	0	0	16501	754	26	4		4	TOX	8	60031374	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2673010	60031374	86332648	454	117430											
CHD7	55636	broad.mit.edu	37	chr8	61707560	61707560	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagtaataagaaacctgaCtcagaagcaagtgctttgaa	8	7	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61707560	T	T	61707560	2	4	130	1	0	0	0	0	0	0	0	1	3361	564	20	4		4	CHD7	8	61707560	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1676186	61707560	84656462	455	117431											
C8orf45	157777	broad.mit.edu	37	chr8	67786809	67786809	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattaattggacaattgcaGactgaaacgcaagtaagttt	8	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67786809	T	T	67786809	3	4	130	1	0	0	0	0	1	0	0	0	2456	933	33	3	283	3	C8orf45	8	67786809	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	6079249	67786809	78577213	456	117432											
CPA6	57094	broad.mit.edu	37	chr8	68658312	68658312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcttcaaaaagagccagCaaagaggcaggaaagcagct	11	8	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68658312	A	A	68658312	3	1	130	1	0	0	0	0	1	0	0	0	3826	710	25	3	1304	3	CPA6	8	68658312	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	871503	68658312	77705710	457	117433											
PREX2	80243	broad.mit.edu	37	chr8	68982126	68982126	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actccagtgataaggtgagtCtggtttttaagttctgggaa	12	5	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68982126	A	A	68982126	1	1	130	0	1	0	0	0	0	0	0	0	12583	928	32	3		3	PREX2	8	68982126	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	323814	68982126	77381896	458	117434											
PREX2	80243	broad.mit.edu	37	chr8	69039671	69039671	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtaacattttgcatttTatttttttttactatttaag	4	4	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69039671	A	A	69039671	1	1	130	0	1	0	0	0	0	0	0	0	12583	1769	61	5		5	PREX2	8	69039671	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	57545	69039671	77324351	459	117435											
CRISPLD1	83690	broad.mit.edu	37	chr8	75927086	75927086	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccttacaaacatgggcgGccctgttctgcttgcccacc	9	17	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75927086	T	T	75927086	2	4	130	1	0	0	0	0	0	0	0	1	3914	1190	42	3		3	CRISPLD1	8	75927086	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	6887415	75927086	70436936	460	117436											
TPD52	7163	broad.mit.edu	37	chr8	80954840	80954840	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtatcaaaaagaccctgttCatctctctacttgcctttaa	4	11	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80954840	T	T	80954840	1	4	130	0	1	0	0	0	0	0	0	0	16521	841	29	4		4	TPD52	8	80954840	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	5027754	80954840	65409182	461	117437											
FABP9	646480	broad.mit.edu	37	chr8	82371530	82371530	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacactaatagttactgtcGgtttcactaaccctgccatg	6	12	1	0	rs141600603	byFrequency;by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82371530	T	T	82371530	3	4	130	1	0	0	0	0	1	0	0	0	5409	1116	39	1	293	1	FABP9	8	82371530	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1416690	82371530	63992492	462	117438											
CNGB3	54714	broad.mit.edu	37	chr8	87672173	87672173	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgttgaagagttgtcctGggctcttgatcaatgagaaa	12	6	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87672173	C	C	87672173	1	2	130	0	1	0	0	0	0	0	0	0	3633	1363	47	4		4	CNGB3	8	87672173	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	5300643	87672173	58691849	463	117439											
CNGB3	54714	broad.mit.edu	37	chr8	87673463	87673463	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttctttttcttttttgatCtgaagatcattgtgcaaaag	6	6	4	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87673463	G	G	87673463	1	3	130	0	1	0	0	0	0	0	0	0	3633	928	32	4		4	CNGB3	8	87673463	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1290	87673463	58690559	464	117440											
RUNX1T1	862	broad.mit.edu	37	chr8	92998379	92998379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactgggtctgggttgacggGactctgctgcctagagtggc	16	9	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92998379	T	T	92998379	3	4	130	1	0	0	0	0	1	0	0	0	13858	1174	41	3	578	3	RUNX1T1	8	92998379	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	5324916	92998379	53365643	465	117441											
RIMS2	9699	broad.mit.edu	37	chr8	105105698	105105698	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcaatctgtgttaacaGtatcgatcaggatgggatcc	10	7	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105105698	T	T	105105698	5	4	130	1	0	0	0	0	0	0	1	0	13479	1044	36	3		3	RIMS2	8	105105698	Splice_Site	SNP	G	TCGA-44-6778-01A-11D-1855-08	12107319	105105698	41258324	466	117442											
ZFPM2	23414	broad.mit.edu	37	chr8	106815427	106815427	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattgttgcccaaaaatcgAggaatggtaatagtgaatgg	11	6	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106815427	T	T	106815427	2	4	130	1	0	0	0	0	0	0	0	1	17784	291	11	5		5	ZFPM2	8	106815427	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	1709729	106815427	39548595	467	117443											
PKHD1L1	93035	broad.mit.edu	37	chr8	110413726	110413726	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtctctctcggattagGtgaggattgcatatcattct	9	9	5	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110413726	C	C	110413726	3	2	130	1	0	0	0	0	1	0	0	0	12067	1275	44	4	1336	4	PKHD1L1	8	110413726	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3598299	110413726	35950296	468	117444											
CSMD3	114788	broad.mit.edu	37	chr8	113326812	113326813	+	Frame_Shift_Del	DEL	AG	-	-													gggctcaatatgactccagtAgaatctagccgtaattcatt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113326813	-	-	113326812	7	5	130	1	0	1	0	1	0	0	0	0	3980	407	15	0	3824	0	CSMD3	8	113326812	Frame_Shift_Del	DEL	AG	TCGA-44-6778-01A-11D-1855-08	2913086	113326812	33037210	469	117445											
CSMD3	114788	broad.mit.edu	37	chr8	113678692	113678692	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataaaacattcaagataaatCgcagatattattcttaatac	3	6	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113678692	G	G	113678692	1	3	130	0	1	0	0	0	0	0	0	0	3980	899	31	4		4	CSMD3	8	113678692	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	351880	113678692	32685330	470	117446											
CSMD3	114788	broad.mit.edu	37	chr8	114111138	114111138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtactcattaggaaaactaGggctggatatgatgccactg	12	7	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114111138	T	T	114111138	3	4	130	1	0	0	0	0	1	0	0	0	3980	1000	35	2	10627	2	CSMD3	8	114111138	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	432446	114111138	32252884	471	117447											
EXT1	2131	broad.mit.edu	37	chr8	119123235	119123235	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgaaataaaacaaaagggcGagacaagagccagctgagag	12	8	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119123235	A	A	119123235	2	1	130	1	0	0	0	0	0	0	0	1	5366	1045	37	4		4	EXT1	8	119123235	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	5012097	119123235	27240787	472	117448											
ADCY8	114	broad.mit.edu	37	chr8	131964280	131964280	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggacggtcctgttaggctGaccagcgagtctcagatggg	16	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131964280	T	T	131964280	1	4	130	0	1	0	0	0	0	0	0	0	300	1305	45	3		3	ADCY8	8	131964280	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	12841045	131964280	14399742	473	117449											
TG	7038	broad.mit.edu	37	chr8	133973081	133973081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccagctctggttttgtaCtagggagctggaatagagct	13	7	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133973081	A	A	133973081	1	1	130	0	1	0	0	0	0	0	0	0	15936	580	20	3		3	TG	8	133973081	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2008801	133973081	12390941	474	117450											
FAM135B	51059	broad.mit.edu	37	chr8	139165277	139165277	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccacattctcacctggctCtggacaccttataacttctt	6	14	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139165277	A	A	139165277	4	1	130	1	0	0	0	0	0	1	0	0	5495	922	32	3	2811	3	FAM135B	8	139165277	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	5192196	139165277	7198745	475	117451											
COL22A1	169044	broad.mit.edu	37	chr8	139767984	139767984	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactcatccaaccacccaatCccaccagcacctgcatccat	3	20	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139767984	A	A	139767984	1	1	130	0	1	0	0	0	0	0	0	0	3713	870	30	3		3	COL22A1	8	139767984	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	602707	139767984	6596038	476	117452											
C8orf31	286122	broad.mit.edu	37	chr8	144124596	144124596	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggagctgtacgcacaggGcccaggggctgctggctgcc	17	13	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144124596	A	A	144124596	3	1	130	1	0	0	0	0	1	0	0	0	2446	1203	42	4	109	4	C8orf31	8	144124596	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4356612	144124596	2239426	477	117453											
RHPN1	114822	broad.mit.edu	37	chr8	144464817	144464817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagcacccagggtggcCgtgagggccaggatccctgc	15	13	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144464817	A	A	144464817	3	1	130	1	0	0	0	0	1	0	0	0	13459	652	23	1	2067	1	RHPN1	8	144464817	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	340221	144464817	1899205	478	117454											
NAPRT1	93100	broad.mit.edu	37	chr8	144657544	144657544	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggggcaagaataagcgggGgccctggtgctttgaaggtg	18	7	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144657544	A	A	144657544	1	1	130	0	1	0	0	0	0	0	0	0	10259	1247	43	4		4	NAPRT1	8	144657544	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	192727	144657544	1706478	479	117455											
ARHGAP39	80728	broad.mit.edu	37	chr8	145759399	145759399	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctaggcgggctccatgtGgcaccctctgcgctgctgcc	13	17	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145759399	A	A	145759399	1	1	130	0	1	0	0	0	0	0	0	0	886	1363	47	4		4	ARHGAP39	8	145759399	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1101855	145759399	604623	480	117456											
TPD52L3	89882	broad.mit.edu	37	chr9	6328912	6328912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatgggcactctcatctGcaggaagcttggaggcgtga	13	11	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6328912	T	T	6328912	3	4	130	1	0	0	0	0	1	0	0	0	16524	1319	46	3	319	3	TPD52L3	9	6328912	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08		6328912	134884519	481	117457											
KDM4C	23081	broad.mit.edu	37	chr9	7046740	7046740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcagagatagaccttcatGtaattcctgatggttttaat	7	7	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7046740	T	T	7046740	1	4	130	0	1	0	0	0	0	0	0	0	8200	1392	48	3		3	KDM4C	9	7046740	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	717828	7046740	134166691	482	117458											
PTPRD	5789	broad.mit.edu	37	chr9	8389503	8389503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgctatcttactgttccaCctcacactagagaagtcaca	6	12	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8389503	A	A	8389503	1	1	130	0	1	0	0	0	0	0	0	0	12907	522	18	3		3	PTPRD	9	8389503	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1342763	8389503	132823928	483	117459											
NFIB	4781	broad.mit.edu	37	chr9	14307010	14307011	+	Frame_Shift_Ins	INS	-	A	A													gctcctgcacgtagtatgccINSaaaaacaaatcaagctcctt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14307011	A	A	14307010	7	5	130	1	0	1	1	0	0	0	0	0	10466	593	21	0	754	0	NFIB	9	14307010	Frame_Shift_Ins	INS	-	TCGA-44-6778-01A-11D-1855-08	5917507	14307010	126906421	484	117460											
HAUS6	54801	broad.mit.edu	37	chr9	19063030	19063030	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaccagatgatcttgctcTttttgaaatggatcactttt	6	8	4	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19063030	C	C	19063030	2	2	130	1	0	0	0	0	0	0	0	1	7036	1606	56	5		5	HAUS6	9	19063030	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	4756020	19063030	122150401	485	117461											
IFNA16	3449	broad.mit.edu	37	chr9	21216931	21216931	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcttccaccccaacctccTgtgtcacacaggcttctagg	6	17	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21216931	A	A	21216931	3	1	130	1	0	0	0	0	1	0	0	0	7605	1580	55	5	199	5	IFNA16	9	21216931	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	2153901	21216931	119996500	486	117462											
NPR2	4882	broad.mit.edu	37	chr9	35802002	35802002	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccggtcacttcaaggtgaAcagtcatttgcttgttctgg	10	10	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35802002	G	G	35802002	1	3	130	0	1	0	0	0	0	0	0	0	10690	58	2	5		5	NPR2	9	35802002	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	14585071	35802002	105411429	487	117463											
GNE	10020	broad.mit.edu	37	chr9	36229167	36229167	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatatccaaagaataaagaAattatcagtgtactatgctc	6	6	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36229167	C	C	36229167	1	2	130	0	1	0	0	0	0	0	0	0	6586	29	1	5		5	GNE	9	36229167	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	427165	36229167	104984264	488	117464											
GRHPR	9380	broad.mit.edu	37	chr9	37430738	37430738	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgtgggttgttggtgagaCcccaggctgagcttgctggt	16	10	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37430738	T	T	37430738	1	4	130	0	1	0	0	0	0	0	0	0	6832	522	18	4		4	GRHPR	9	37430738	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1201571	37430738	103782693	489	117465											
ANKRD20A3	441425	broad.mit.edu	37	chr9	43133199	43133199	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaagccgggcctgggggcCccctcccacccccggctgag	16	18	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43133199	G	G	43133199	1	3	130	0	1	0	0	0	0	0	0	0	649	638	22	4		4	ANKRD20A3	9	43133199	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	5702461	43133199	98080232	490	117466											
FAM75A6	389730	broad.mit.edu	37	chr9	43627175	43627175	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaagcaggagataggacTgggaaagaagactgaagatg	16	3	0	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43627175	A	A	43627175	2	1	130	1	0	0	0	0	0	0	0	1	5674	1567	55	5		5	FAM75A6	9	43627175	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	493976	43627175	97586256	491	117467											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69420354	69420354	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgctgctgctggcagatTaacccaacaaagaaagattg	9	9	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69420354	A	A	69420354	4	1	130	1	0	0	0	0	0	1	0	0	650	1764	61	5	1294	5	ANKRD20A4	9	69420354	Nonsense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	25793179	69420354	71793077	492	117468											
FOXB2	442425	broad.mit.edu	37	chr9	79635401	79635401	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattgagaacattattggCcgggactacaagggcgtgct	13	9	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79635401	A	A	79635401	2	1	130	1	0	0	0	0	0	0	0	1	6051	726	26	3		3	FOXB2	9	79635401	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	10215047	79635401	61578030	493	117469											
VPS13A	23230	broad.mit.edu	37	chr9	79980489	79980489	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcatatatctcctatcaaGgtaggagaaagtcattttta	6	6	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79980489	A	A	79980489	2	1	130	1	0	0	0	0	0	0	0	1	17316	1014	35	4		4	VPS13A	9	79980489	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	345088	79980489	61232942	494	117470											
RASEF	158158	broad.mit.edu	37	chr9	85615295	85615295	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcctaataagtaacacTgcacagaaaataagcagtgt	6	8	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85615295	A	A	85615295	1	1	130	0	1	0	0	0	0	0	0	0	13176	1595	55	5		5	RASEF	9	85615295	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	5634806	85615295	55598136	495	117471											
UBQLN1	29979	broad.mit.edu	37	chr9	86284187	86284187	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttttgcatcagttgtggGttttcagttatttgttgcaa	10	4	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86284187	A	A	86284187	2	1	130	1	0	0	0	0	0	0	0	1	17022	1252	44	4		4	UBQLN1	9	86284187	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	668892	86284187	54929244	496	117472											
COL15A1	1306	broad.mit.edu	37	chr9	101824294	101824294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgacatgctgcagaaagcGcatttggttatagaaggaac	12	6	0	3	rs146027381		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101824294	T	T	101824294	2	4	130	1	0	0	0	0	0	0	0	1	3704	1074	38	3		3	COL15A1	9	101824294	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	15540107	101824294	39389137	497	117473											
ABCA1	19	broad.mit.edu	37	chr9	107645531	107645532	+	Intron	DNP	CC	AA	AA													gccaagtgcatagaactcagCctggctcccaggtcctccac							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	107645532	AA	AA	107645531	1	1	130	0	1	0	0	0	0	0	0	0	28	754	26	3		3	ABCA1	9	107645531	Intron	DNP	CC	TCGA-44-6778-01A-11D-1855-08	5821237	107645531	33567900	498	117474											
ASTN2	23245	broad.mit.edu	37	chr9	119737474	119737474	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacctatgcagagtactggaGatgattccctacctgacatc	8	11	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119737474	A	A	119737474	1	1	130	0	1	0	0	0	0	0	0	0	1069	957	33	4		4	ASTN2	9	119737474	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	12091943	119737474	21475957	499	117475											
ASTN2	23245	broad.mit.edu	37	chr9	119943142	119943142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatgcggatcttctggtGgccaggaaacttgaacttgg	14	7	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119943142	T	T	119943142	1	4	130	0	1	0	0	0	0	0	0	0	1069	1363	47	2		2	ASTN2	9	119943142	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	205668	119943142	21270289	500	117476											
C5	727	broad.mit.edu	37	chr9	123731377	123731377	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtttgtaatcagagtttccGtagcctctgtagtgggatgc	12	8	2	1	rs142157475		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123731377	A	A	123731377	2	1	130	1	0	0	0	0	0	0	0	1	2303	1140	40	4		4	C5	9	123731377	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	3788235	123731377	17482054	501	117477											
DAB2IP	153090	broad.mit.edu	37	chr9	124329406	124329406	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaggaggaacccagacGctcatggagacagcctcggt	12	11	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124329406	T	T	124329406	1	4	130	0	1	0	0	0	0	0	0	0	4252	1102	38	3		3	DAB2IP	9	124329406	5'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	598029	124329406	16884025	502	117478											
LHX6	26468	broad.mit.edu	37	chr9	124976226	124976226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggggcgtgcccgcggtcCccaggccccgcccacccccg	13	23	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124976226	A	A	124976226	1	1	130	0	1	0	0	0	0	0	0	0	8847	638	22	2		2	LHX6	9	124976226	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	646820	124976226	16237205	503	117479											
OR1Q1	158131	broad.mit.edu	37	chr9	125377740	125377740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaaccttttctacctgcGgctcccacctcactgtggtg	9	14	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125377740	T	T	125377740	3	4	130	1	0	0	0	0	1	0	0	0	11065	1116	39	1	726	1	OR1Q1	9	125377740	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	401514	125377740	15835691	504	117480											
OR1B1	347169	broad.mit.edu	37	chr9	125391460	125391460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcgatccagagccatgaCagcaatgacaagtgtatctg	10	9	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125391460	A	A	125391460	3	1	130	1	0	0	0	0	1	0	0	0	11045	478	17	3	604	3	OR1B1	9	125391460	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	13720	125391460	15821971	505	117481											
GPR21	2844	broad.mit.edu	37	chr9	125797553	125797553	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccgcttcagcagccagagTggggagactggggaagtgca	17	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125797553	A	A	125797553	3	1	130	1	0	0	0	0	1	0	0	0	6746	1693	59	5	710	5	GPR21	9	125797553	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	406093	125797553	15415878	506	117482											
SH2D3C	10044	broad.mit.edu	37	chr9	130536632	130536632	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtcatcctgcgtggctTcaaaggtgtcaggctccaaa	10	12	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130536632	A	A	130536632	3	1	130	1	0	0	0	0	1	0	0	0	14347	1783	62	5	2607	5	SH2D3C	9	130536632	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	4739079	130536632	10676799	507	117483											
TOR1A	1861	broad.mit.edu	37	chr9	132586260	132586260	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacgcgggtagatgtagccGgtgaggacgccggccagggc	19	10	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132586260	A	A	132586260	2	1	130	1	0	0	0	0	0	0	0	1	16495	1103	39	4		4	TOR1A	9	132586260	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	2049628	132586260	8627171	508	117484											
LAMC3	10319	broad.mit.edu	37	chr9	133911832	133911832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggtacgccccgggggCagctcggggtctctgtgctg	17	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133911832	A	A	133911832	1	1	130	0	1	0	0	0	0	0	0	0	8688	725	25	3		3	LAMC3	9	133911832	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1325572	133911832	7301599	509	117485											
NUP214	8021	broad.mit.edu	37	chr9	134077033	134077033	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttctttgtattttacaGgttttgggtctagtaatact	8	4	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134077033	T	T	134077033	5	4	130	1	0	0	0	0	0	0	1	0	10857	1014	35	2	5639	2	NUP214	9	134077033	Splice_Site	SNP	G	TCGA-44-6778-01A-11D-1855-08	165201	134077033	7136398	510	117486											
SETX	23064	broad.mit.edu	37	chr9	135173664	135173664	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggaaagttctcttgagtctGgatggaaaggtaacactcag	12	7	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135173664	C	C	135173664	3	2	130	1	0	0	0	0	1	0	0	0	14254	1357	47	4	2505	4	SETX	9	135173664	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1096631	135173664	6039767	511	117487											
C9orf171	389799	broad.mit.edu	37	chr9	135374960	135374960	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccgccccctctccctcCaaacatgacatttgggatcc	7	17	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135374960	T	T	135374960	3	4	130	1	0	0	0	0	1	0	0	0	2496	594	21	4	619	4	C9orf171	9	135374960	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	201296	135374960	5838471	512	117488											
OBP2B	29989	broad.mit.edu	37	chr9	136082503	136082503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccggcacatgaaagccggCacagggggcttccttttccc	12	15	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136082503	A	A	136082503	1	1	130	0	1	0	0	0	0	0	0	0	10906	725	25	3		3	OBP2B	9	136082503	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	707543	136082503	5130928	513	117489											
PNPLA7	375775	broad.mit.edu	37	chr9	140354833	140354833	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgctgcatccgggctcttTagcagaggcctctacccgtc	11	15	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140354833	C	C	140354833	1	2	130	0	1	0	0	0	0	0	0	0	12265	1769	61	5		5	PNPLA7	9	140354833	3'UTR	SNP	T	TCGA-44-6778-01A-11D-1855-08	4272330	140354833	858598	514	117490											
ITIH5	80760	broad.mit.edu	37	chr10	7614396	7614396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaaacaaagcctgcctGtcacaccagacatttttatt	4	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7614396	T	T	7614396	1	4	130	0	1	0	0	0	0	0	0	0	7977	1392	48	3		3	ITIH5	10	7614396	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08		7614396	127920351	515	117491											
ITIH2	3698	broad.mit.edu	37	chr10	7786869	7786869	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcccgtcaatgttgactttCtgggaatctacataccccct	6	13	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7786869	G	G	7786869	3	3	130	1	0	0	0	0	1	0	0	0	7974	912	32	4	2598	4	ITIH2	10	7786869	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	172473	7786869	127747878	516	117492											
GATA3	2625	broad.mit.edu	37	chr10	8111628	8111628	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccagcaaacagcgtcaccAccaccctctccaagtgaatc	6	17	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8111628	C	C	8111628	1	2	130	0	1	0	0	0	0	0	0	0	6317	174	6	5		5	GATA3	10	8111628	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	324759	8111628	127423119	517	117493											
CAMK1D	57118	broad.mit.edu	37	chr10	12708721	12708722	+	Intron	INS	-	T	T													ctcactattttgtgcgtctaINSttttttttttcaggattaag							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12708722	T	T	12708721	6	5	130	0	1	1	1	0	0	0	0	0	2623	464	16	0		0	CAMK1D	10	12708721	Intron	INS	-	TCGA-44-6778-01A-11D-1855-08	4597093	12708721	122826026	518	117494											
BEND7	222389	broad.mit.edu	37	chr10	13541840	13541840	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaacgggtgccatactgcCctgagaactgtccactctgg	11	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13541840	T	T	13541840	3	4	130	1	0	0	0	0	1	0	0	0	1408	623	22	4	1255	4	BEND7	10	13541840	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	833119	13541840	121992907	519	117495											
DCLRE1C	64421	broad.mit.edu	37	chr10	14996039	14996039	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcccagagtccgggacccCaaaaccgcagctgaagccaa	10	15	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14996039	T	T	14996039	1	4	130	0	1	0	0	0	0	0	0	0	4329	609	21	4		4	DCLRE1C	10	14996039	5'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	1454199	14996039	120538708	520	117496											
CUBN	8029	broad.mit.edu	37	chr10	16975227	16975228	+	Missense_Mutation	DNP	CC	AA	AA													actgtaactgtcaggccagcCcggggagaagagaaacacgg							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	16975228	AA	AA	16975227	3	1	130	1	0	0	0	0	1	0	0	0	4084	623	22	2	5000	2	CUBN	10	16975227	Missense_Mutation	DNP	CC	TCGA-44-6778-01A-11D-1855-08	1979188	16975227	118559520	521	117497											
MLLT10	8028	broad.mit.edu	37	chr10	21913676	21913676	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtctgacgatgcttggaatCaggttggttgtaagcatctg	14	6	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21913676	A	A	21913676	1	1	130	0	1	0	0	0	0	0	0	0	9719	841	29	3		3	MLLT10	10	21913676	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4938449	21913676	113621071	522	117498											
SPAG6	9576	broad.mit.edu	37	chr10	22678012	22678012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtttttaggttctaaatAgagtgtggcaatattaaact	9	3	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22678012	G	G	22678012	1	3	130	0	1	0	0	0	0	0	0	0	15098	435	15	5		5	SPAG6	10	22678012	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	764336	22678012	112856735	523	117499											
ARHGAP21	57584	broad.mit.edu	37	chr10	24885534	24885534	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacaggtcagaaatacttaGggaaactaaggtctgctatg	10	6	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24885534	C	C	24885534	1	2	130	0	1	0	0	0	0	0	0	0	873	1015	35	4		4	ARHGAP21	10	24885534	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2207522	24885534	110649213	524	117500											
ARHGAP21	57584	broad.mit.edu	37	chr10	24959146	24959147	+	Splice_Site	DNP	CC	AA	AA													tgcggtaactatttctcttaCcttatatgaaaattgaattg							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24959147	AA	AA	24959146	5	1	130	1	0	0	0	0	0	0	1	0	873	521	18	3	5728	3	ARHGAP21	10	24959146	Splice_Site	DNP	CC	TCGA-44-6778-01A-11D-1855-08	73612	24959146	110575601	525	117501											
GJD4	219770	broad.mit.edu	37	chr10	35894512	35894512	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcatggaaggcgtggactTgctagggtttctcatcatca	12	8	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35894512	C	C	35894512	3	2	130	1	0	0	0	0	1	0	0	0	6483	1821	63	5	19	5	GJD4	10	35894512	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	10935366	35894512	99640235	526	117502											
ALOX5	240	broad.mit.edu	37	chr10	45907736	45907736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgatagtgaaaaaggagtgGactttgttctgaattactcc	10	5	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45907736	T	T	45907736	3	4	130	1	0	0	0	0	1	0	0	0	540	1174	41	3	543	3	ALOX5	10	45907736	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	10013224	45907736	89627011	527	117503											
RBP3	5949	broad.mit.edu	37	chr10	48389678	48389678	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcggctgcagcgtcgggCgcgggccaagaaggagtttc	16	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48389678	A	A	48389678	2	1	130	1	0	0	0	0	0	0	0	1	13265	755	27	3		3	RBP3	10	48389678	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	2481942	48389678	87145069	528	117504											
OGDHL	55753	broad.mit.edu	37	chr10	50945852	50945852	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggataccatttggtcaaagCtggacttggcctctgggtgc	13	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50945852	T	T	50945852	3	4	130	1	0	0	0	0	1	0	0	0	10935	797	28	4	478	4	OGDHL	10	50945852	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2556174	50945852	84588895	529	117505											
OGDHL	55753	broad.mit.edu	37	chr10	50953834	50953834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgccttggcctcagtccCcagacccaccaggtccacga	8	19	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50953834	A	A	50953834	1	1	130	0	1	0	0	0	0	0	0	0	10935	638	22	2		2	OGDHL	10	50953834	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	7982	50953834	84580913	530	117506											
OGDHL	55753	broad.mit.edu	37	chr10	50964734	50964734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctctctggggagatgatGttggagctgagaccccttcc	15	10	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50964734	T	T	50964734	1	4	130	0	1	0	0	0	0	0	0	0	10935	1392	48	3		3	OGDHL	10	50964734	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	10900	50964734	84570013	531	117507											
AGAP7	653268	broad.mit.edu	37	chr10	51464849	51464849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgttccttctcttccctcGtggacttttctgtgggtttt	8	12	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51464849	T	T	51464849	3	4	130	1	0	0	0	0	1	0	0	0	373	1145	40	3	388	3	AGAP7	10	51464849	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	500115	51464849	84069898	532	117508											
PCDH15	65217	broad.mit.edu	37	chr10	55566772	55566772	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatattgccgttgatattaCtgtggatactaggatggtga	11	4	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55566772	T	T	55566772	3	4	130	1	0	0	0	0	1	0	0	0	11605	565	20	4	436	4	PCDH15	10	55566772	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	4101923	55566772	79967975	533	117509											
CDK1	983	broad.mit.edu	37	chr10	62544403	62544403	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccataaggaaaaaaaaaaaGaaaaaaagatctttagtttg	7	3	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62544403	A	A	62544403	1	1	130	0	1	0	0	0	0	0	0	0	3154	957	33	4		4	CDK1	10	62544403	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	6977631	62544403	72990344	534	117510											
ZNF365	22891	broad.mit.edu	37	chr10	64414707	64414707	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtaagtcagtattatgCataggagattgtaaggtgga	13	3	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64414707	T	T	64414707	1	4	130	0	1	0	0	0	0	0	0	0	17995	725	25	4		4	ZNF365	10	64414707	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1870304	64414707	71120040	535	117511											
JMJD1C	221037	broad.mit.edu	37	chr10	64968929	64968929	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtctgacaggaatgtgacTaagtaatccaataccatctg	9	8	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64968929	A	A	64968929	3	1	130	1	0	0	0	0	1	0	0	0	8020	1522	53	5	4933	5	JMJD1C	10	64968929	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	554222	64968929	70565818	536	117512											
RUFY2	55680	broad.mit.edu	37	chr10	70143611	70143611	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcttcattgtacatttcatCtagcccctgacgagaatgct	8	11	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70143611	G	G	70143611	3	3	130	1	0	0	0	0	1	0	0	0	13850	913	32	4	1086	4	RUFY2	10	70143611	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	5174682	70143611	65391136	537	117513											
HK1	3098	broad.mit.edu	37	chr10	71136584	71136584	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccagcgaggctgggggcTggtgaggggtgagtcggggc	23	8	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71136584	C	C	71136584	1	2	130	0	1	0	0	0	0	0	0	0	7257	1595	55	5		5	HK1	10	71136584	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	992973	71136584	64398163	538	117514											
ADAMTS14	140766	broad.mit.edu	37	chr10	72490001	72490001	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccggcaggactttgggccCtcaggtatgcaaggtactgt	13	11	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72490001	A	A	72490001	2	1	130	1	0	0	0	0	0	0	0	1	259	668	24	2		2	ADAMTS14	10	72490001	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1353417	72490001	63044746	539	117515											
CHST3	9469	broad.mit.edu	37	chr10	73766983	73766983	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctagcagatgccaacagcaCcgacccagccctgatcttag	8	15	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73766983	G	G	73766983	3	3	130	1	0	0	0	0	1	0	0	0	3436	507	18	4	200	4	CHST3	10	73766983	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1276982	73766983	61767764	540	117516											
OIT3	170392	broad.mit.edu	37	chr10	74660154	74660154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttttatgacatctgcgaCgaggactgccatggcagctg	12	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74660154	A	A	74660154	3	1	130	1	0	0	0	0	1	0	0	0	10944	535	19	3	466	3	OIT3	10	74660154	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	893171	74660154	60874593	541	117517											
PCGF5	84333	broad.mit.edu	37	chr10	93000258	93000258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtctgtaagacttgtattGttcagcactttgaagatagc	9	6	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93000258	T	T	93000258	3	4	130	1	0	0	0	0	1	0	0	0	11671	1377	48	3	136	3	PCGF5	10	93000258	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	18340104	93000258	42534489	542	117518											
PLCE1	51196	broad.mit.edu	37	chr10	95931002	95931002	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagttcagctgggatcagcAaggagctgatcgatctgcag	13	9	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95931002	T	T	95931002	4	4	130	1	0	0	0	0	0	1	0	0	12129	131	5	5	1854	5	PLCE1	10	95931002	Nonsense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	2930744	95931002	39603745	543	117519											
C10orf28	27291	broad.mit.edu	37	chr10	99968844	99968844	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagagcacaaatgacactGttagtccagtaatgattaga	9	7	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99968844	C	C	99968844	3	2	130	1	0	0	0	0	1	0	0	0	1612	1377	48	4	975	4	C10orf28	10	99968844	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	4037842	99968844	35565903	544	117520											
ENTPD7	57089	broad.mit.edu	37	chr10	101464343	101464343	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctataccttctgcggctacGccgaattcaccaccgacaaa	6	16	2	0	rs61738520		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101464343	A	A	101464343	3	1	130	1	0	0	0	0	1	0	0	0	5186	1087	38	4	1764	4	ENTPD7	10	101464343	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1495499	101464343	34070404	545	117521											
PKD2L1	9033	broad.mit.edu	37	chr10	102059577	102059577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttccaagatggaagccCatcccccatctggacccatc	7	16	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102059577	A	A	102059577	1	1	130	0	1	0	0	0	0	0	0	0	12062	609	21	2		2	PKD2L1	10	102059577	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	595234	102059577	33475170	546	117522											
C10orf2	56652	broad.mit.edu	37	chr10	102753055	102753055	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgctttgatggagatgtaGgtgtcttcccgcttgagttc	12	9	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102753055	A	A	102753055	3	1	130	1	0	0	0	0	1	0	0	0	1608	1000	35	4	1876	4	C10orf2	10	102753055	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	693478	102753055	32781692	547	117523											
SORCS1	114815	broad.mit.edu	37	chr10	108366902	108366902	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacggttgaagctgaaaacgTctccttttccaggggactca	10	10	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108366902	A	A	108366902	1	1	130	0	1	0	0	0	0	0	0	0	15044	1682	58	5		5	SORCS1	10	108366902	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	5613847	108366902	27167845	548	117524											
SMC3	9126	broad.mit.edu	37	chr10	112360870	112360870	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaataaaagagtaaaagacActatggcacgatcagaaggt	9	6	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112360870	C	C	112360870	3	2	130	1	0	0	0	0	1	0	0	0	14898	159	6	5	2716	5	SMC3	10	112360870	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	3993968	112360870	23173877	549	117525											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118196354	118196354	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtttcctgctctacactAtacacaatcccaatgcctat	3	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118196354	G	G	118196354	3	3	130	1	0	0	0	0	1	0	0	0	12247	449	16	5	187	5	PNLIPRP3	10	118196354	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	5835484	118196354	17338393	550	117526											
PNLIP	5406	broad.mit.edu	37	chr10	118315065	118315065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcttgggagaaagcttGtgttttgttttgctaaactt	9	5	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118315065	T	T	118315065	1	4	130	0	1	0	0	0	0	0	0	0	12244	1392	48	3		3	PNLIP	10	118315065	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	118711	118315065	17219682	551	117527											
DMBT1	1755	broad.mit.edu	37	chr10	124339028	124339028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggaagtaccctgagtgtGgaacttaccttagattcttg	10	7	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124339028	T	T	124339028	1	4	130	0	1	0	0	0	0	0	0	0	4617	1363	47	2		2	DMBT1	10	124339028	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	6023963	124339028	11195719	552	117528											
DOCK1	1793	broad.mit.edu	37	chr10	129179651	129179651	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtaatgtcaattaccagtCaccttgatgattctattgtt	7	7	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129179651	T	T	129179651	1	4	130	0	1	0	0	0	0	0	0	0	4724	841	29	4		4	DOCK1	10	129179651	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4840623	129179651	6355096	553	117529											
TUBGCP2	10844	broad.mit.edu	37	chr10	135106639	135106639	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgtgcagctgctccaGctgtgacaccagaatcaggt	11	13	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135106639	A	A	135106639	2	1	130	1	0	0	0	0	0	0	0	1	16892	962	34	4		4	TUBGCP2	10	135106639	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	5926988	135106639	428108	554	117530											
ODF3	113746	broad.mit.edu	37	chr11	198314	198314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccaggtccgcagcagccCcaaccatcctcagccaaatg	7	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198314	A	A	198314	1	1	130	0	1	0	0	0	0	0	0	0	10924	638	22	2		2	ODF3	11	198314	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08		198314	134808202	555	117531											
CARS	833	broad.mit.edu	37	chr11	3040126	3040126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcttggaaggacagcCcaggttaataagccagcagg	15	9	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3040126	A	A	3040126	1	1	130	0	1	0	0	0	0	0	0	0	2683	638	22	2		2	CARS	11	3040126	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2841812	3040126	131966390	556	117532											
CARS	833	broad.mit.edu	37	chr11	3041536	3041536	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagagcgcttctcactcaGgcggtctgcagagatgctca	14	11	4	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3041536	A	A	3041536	2	1	130	1	0	0	0	0	0	0	0	1	2683	991	35	4		4	CARS	11	3041536	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1410	3041536	131964980	557	117533											
ZNF195	7748	broad.mit.edu	37	chr11	3381670	3381670	+	Frame_Shift_Del	DEL	C	-	-													cttacactcatctaaactttCccagtctttccttaaatata							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3381670	-	-	3381670	7	5	130	1	0	1	0	1	0	0	0	0	17884	864	30	0	1325	0	ZNF195	11	3381670	Frame_Shift_Del	DEL	C	TCGA-44-6778-01A-11D-1855-08	340134	3381670	131624846	558	117534											
HBG2	3048	broad.mit.edu	37	chr11	5573267	5573267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatggagatatcagcacaGgcaagctgggcaacacctat	11	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5573267	T	T	5573267	1	4	130	0	1	0	0	0	0	0	0	0	7049	1015	35	2		2	HBG2	11	5573267	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2191597	5573267	129433249	559	117535											
TRIM22	10346	broad.mit.edu	37	chr11	5798752	5798752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgggctataaatttcccCaaaacagtttcagaaaacat	6	8	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5798752	A	A	5798752	1	1	130	0	1	0	0	0	0	0	0	0	16620	609	21	2		2	TRIM22	11	5798752	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	225485	5798752	129207764	560	117536											
OR52N1	79473	broad.mit.edu	37	chr11	5809776	5809776	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaaaatcaatctccttgaGattaaaccacaatatgaaga	4	7	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5809776	C	C	5809776	3	2	130	1	0	0	0	0	1	0	0	0	11221	942	33	4	694	4	OR52N1	11	5809776	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	11024	5809776	129196740	561	117537											
TRIM5	85363	broad.mit.edu	37	chr11	5877950	5877950	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctgctttctattaggttaGagtgacagactctccaacct	7	10	3	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5877950	C	C	5877950	1	2	130	0	1	0	0	0	0	0	0	0	16650	957	33	4		4	TRIM5	11	5877950	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	68174	5877950	129128566	562	117538											
OR56A4	120793	broad.mit.edu	37	chr11	6024013	6024014	+	Nonsense_Mutation	DNP	GG	CT	CT													cagagcacgatgtccagcagGgagaggaggctgagcaggta							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	6024014	CT	CT	6024013	4	2	130	1	0	0	0	0	0	1	0	0	11229	1219	43	4	733	4	OR56A4	11	6024013	Nonsense_Mutation	DNP	GG	TCGA-44-6778-01A-11D-1855-08	146063	6024013	128982503	563	117539											
OR56B4	196335	broad.mit.edu	37	chr11	6129809	6129809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgctgtctgtcacacaCcttgcagagaaaaagattcc	8	10	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6129809	A	A	6129809	3	1	130	1	0	0	0	0	1	0	0	0	11232	506	18	3	803	3	OR56B4	11	6129809	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	105796	6129809	128876707	564	117540											
OR6A2	8590	broad.mit.edu	37	chr11	6815838	6815838	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaagaaagtattcctagttCcatagtgatgcctttgaaac	7	7	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6815838	A	A	6815838	1	1	130	0	1	0	0	0	0	0	0	0	11280	870	30	3		3	OR6A2	11	6815838	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	686029	6815838	128190678	565	117541											
OR10A5	144124	broad.mit.edu	37	chr11	6866978	6866978	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcttctcttccctacctaCtgaaatacagtcattgctct	5	13	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6866978	T	T	6866978	3	4	130	1	0	0	0	0	1	0	0	0	10987	565	20	4	67	4	OR10A5	11	6866978	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	51140	6866978	128139538	566	117542											
RBMXL2	27288	broad.mit.edu	37	chr11	7111236	7111236	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgcggcgccgccccaggAcgggggacaccgccatctta	14	17	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7111236	T	T	7111236	2	4	130	1	0	0	0	0	0	0	0	1	13262	262	10	5		5	RBMXL2	11	7111236	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	244258	7111236	127895280	567	117543											
OVCH2	341277	broad.mit.edu	37	chr11	7716478	7716478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaataaagaagaattctcaCtgctctccctcctgtctcct	4	14	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7716478	A	A	7716478	1	1	130	0	1	0	0	0	0	0	0	0	11418	580	20	3		3	OVCH2	11	7716478	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	605242	7716478	127290038	568	117544											
GALNTL4	374378	broad.mit.edu	37	chr11	11292687	11292687	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagccggaagtggccccggTgggtcaggacgcgaggctcc	18	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11292687	A	A	11292687	1	1	130	0	1	0	0	0	0	0	0	0	6285	1711	59	5		5	GALNTL4	11	11292687	3'UTR	SNP	T	TCGA-44-6778-01A-11D-1855-08	3576209	11292687	123713829	569	117545											
BTBD10	84280	broad.mit.edu	37	chr11	13427330	13427330	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcactagctaccatgagaggGaggatcatttcttccagata	10	9	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13427330	C	C	13427330	2	2	130	1	0	0	0	0	0	0	0	1	1547	1161	41	4		4	BTBD10	11	13427330	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	2134643	13427330	121579186	570	117546											
COPB1	1315	broad.mit.edu	37	chr11	14488034	14488034	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttcaccaaacataccctGgccaaatgattaagtctggt	6	10	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14488034	A	A	14488034	1	1	130	0	1	0	0	0	0	0	0	0	3760	1363	47	4		4	COPB1	11	14488034	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1060704	14488034	120518482	571	117547											
INSC	387755	broad.mit.edu	37	chr11	15198783	15198783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggggctggtatcttctcCcagagggagaatgggaatgg	17	6	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15198783	A	A	15198783	1	1	130	0	1	0	0	0	0	0	0	0	7834	638	22	2		2	INSC	11	15198783	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	710749	15198783	119807733	572	117548											
C11orf58	10944	broad.mit.edu	37	chr11	16760379	16760379	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagcgttcagcctccccAgacgacgatgtaaataataa	9	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16760379	T	T	16760379	2	4	130	1	0	0	0	0	0	0	0	1	1663	175	7	5		5	C11orf58	11	16760379	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	1561596	16760379	118246137	573	117549											
PLEKHA7	144100	broad.mit.edu	37	chr11	17035740	17035740	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagccaggtcgtgcagcggAgctggtcactgcgggcagag	18	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17035740	G	G	17035740	3	3	130	1	0	0	0	0	1	0	0	0	12156	304	11	5	3358	5	PLEKHA7	11	17035740	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	275361	17035740	117970776	574	117550											
PTPN5	84867	broad.mit.edu	37	chr11	18750445	18750445	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagggccgagactcaggctGggcagtgcccagagaacctt	15	11	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18750445	A	A	18750445	1	1	130	0	1	0	0	0	0	0	0	0	12899	1363	47	4		4	PTPN5	11	18750445	3'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	1714705	18750445	116256071	575	117551											
SLC17A6	57084	broad.mit.edu	37	chr11	22364896	22364896	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggctacatcgcgtctcGgctggcagccaacaggtaat	14	11	1	0	rs138598101		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22364896	T	T	22364896	3	4	130	1	0	0	0	0	1	0	0	0	14534	1116	39	1	453	1	SLC17A6	11	22364896	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3614451	22364896	112641620	576	117552											
SLC17A6	57084	broad.mit.edu	37	chr11	22391656	22391656	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattgttgcaaacttctgCagaagctggactttttattt	7	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22391656	A	A	22391656	4	1	130	1	0	0	0	0	0	1	0	0	14534	718	25	3	993	3	SLC17A6	11	22391656	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	26760	22391656	112614860	577	117553											
LUZP2	338645	broad.mit.edu	37	chr11	25098816	25098816	+	Intron	DEL	C	-	-													tcaagagagtgtttttgactCccccctccactttctttctt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25098816	-	-	25098816	6	5	130	0	1	1	0	1	0	0	0	0	9174	870	30	0		0	LUZP2	11	25098816	Intron	DEL	C	TCGA-44-6778-01A-11D-1855-08	2707160	25098816	109907700	578	117554											
ANO3	63982	broad.mit.edu	37	chr11	26353816	26353816	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccggctgggacgcgcagAgtgaaaatggtccaccattc	13	11	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26353816	C	C	26353816	1	2	130	0	1	0	0	0	0	0	0	0	698	319	11	5		5	ANO3	11	26353816	5'UTR	SNP	A	TCGA-44-6778-01A-11D-1855-08	1255000	26353816	108652700	579	117555											
FIBIN	387758	broad.mit.edu	37	chr11	27016134	27016134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acctgtgtcaaggctacttcGatggccccctctacccagag	9	15	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27016134	T	T	27016134	3	4	130	1	0	0	0	0	1	0	0	0	5942	1058	37	3	63	3	FIBIN	11	27016134	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	662318	27016134	107990382	580	117556											
KCNA4	3739	broad.mit.edu	37	chr11	30032966	30032966	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgggccaggtcagtGcccagtgtgatgaagtaagg	16	7	1	2	rs143729714	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30032966	A	A	30032966	2	1	130	1	0	0	0	0	0	0	0	1	8075	1306	46	4		4	KCNA4	11	30032966	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	3016832	30032966	104973550	581	117557											
DCDC1	341019	broad.mit.edu	37	chr11	31312315	31312315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattctaatagaaagaacaGgcttggttttccgtcttttg	8	7	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31312315	T	T	31312315	3	4	130	1	0	0	0	0	1	0	0	0	4317	1000	35	2	237	2	DCDC1	11	31312315	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1279349	31312315	103694201	582	117558											
HIPK3	10114	broad.mit.edu	37	chr11	33369369	33369369	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattaaagaaagatcttgatTaaaaacattgttctgaactt	6	4	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33369369	G	G	33369369	1	3	130	0	1	0	0	0	0	0	0	0	7185	1769	61	5		5	HIPK3	11	33369369	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	2057054	33369369	101637147	583	117559											
LRP4	4038	broad.mit.edu	37	chr11	46905469	46905469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggacgatcaaggttctcCcagatgagtactgttctcat	10	10	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46905469	A	A	46905469	3	1	130	1	0	0	0	0	1	0	0	0	9046	624	22	2	3232	2	LRP4	11	46905469	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	13536100	46905469	88101047	584	117560											
MADD	8567	broad.mit.edu	37	chr11	47310710	47310710	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgccccgtcccccgtgacGcccatgcttgcccatggggc	11	19	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47310710	C	C	47310710	1	2	130	0	1	0	0	0	0	0	0	0	9240	1102	38	4		4	MADD	11	47310710	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	405241	47310710	87695806	585	117561											
OR5L1	219437	broad.mit.edu	37	chr11	55578927	55578927	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtttcttttcctccaatctCatataaattggagacatggg	7	8	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55578927	A	A	55578927	1	1	130	0	1	0	0	0	0	0	0	0	11264	841	29	3		3	OR5L1	11	55578927	5'Flank	SNP	C	TCGA-44-6778-01A-11D-1855-08	8268217	55578927	79427589	586	117562											
OR5D16	390144	broad.mit.edu	37	chr11	55606872	55606872	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagataagcacactactcatCattctgacatcttatgcatt	5	10	4	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55606872	A	A	55606872	2	1	130	1	0	0	0	0	0	0	0	1	11250	816	29	3		3	OR5D16	11	55606872	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	27945	55606872	79399644	587	117563											
OR5AS1	219447	broad.mit.edu	37	chr11	55798481	55798481	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagacactcagatcaaccAgcttctgctctttgctttgt	6	12	4	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55798481	T	T	55798481	3	4	130	1	0	0	0	0	1	0	0	0	11240	188	7	5	589	5	OR5AS1	11	55798481	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	191609	55798481	79208035	588	117564											
OR8K5	219453	broad.mit.edu	37	chr11	55927901	55927901	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaatagattgttattcaCaatagataatagaaacatta	5	4	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55927901	A	A	55927901	1	1	130	0	1	0	0	0	0	0	0	0	11339	493	17	3		3	OR8K5	11	55927901	5'Flank	SNP	C	TCGA-44-6778-01A-11D-1855-08	129420	55927901	79078615	589	117565											
OR5M10	390167	broad.mit.edu	37	chr11	56344790	56344790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgcaaatgttcttggaCatcctggaactgtaatgtaa	10	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56344790	A	A	56344790	3	1	130	1	0	0	0	0	1	0	0	0	11267	478	17	3	543	3	OR5M10	11	56344790	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	416889	56344790	78661726	590	117566											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57078041	57078042	+	Intron	INS	-	A	A													aaggagtccctgggaataagINSaaaaaaaaacagacaaagaa							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57078042	A	A	57078041	6	5	130	0	1	1	1	0	0	0	0	0	16443	957	33	0		0	TNKS1BP1	11	57078041	Intron	INS	-	TCGA-44-6778-01A-11D-1855-08	733251	57078041	77928475	591	117567											
P2RX3	5024	broad.mit.edu	37	chr11	57137380	57137380	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aatgagactacgctgaaaatCgcggctttgaccaacccagt	9	11	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57137380	G	G	57137380	3	3	130	1	0	0	0	0	1	0	0	0	11435	874	31	4	1150	4	P2RX3	11	57137380	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	59339	57137380	77869136	592	117568											
OR5B12	390191	broad.mit.edu	37	chr11	58207550	58207550	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaaaaggaagactatgaaGagtgggatctgcagttctgg	14	4	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58207550	C	C	58207550	2	2	130	1	0	0	0	0	0	0	0	1	11242	929	33	4		4	OR5B12	11	58207550	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1070170	58207550	76798966	593	117569											
OR5AN1	390195	broad.mit.edu	37	chr11	59132201	59132201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaacctcttacaggaacaGcaaactatcacttttgttgg	6	11	2	0	rs145916059	byFrequency	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59132201	T	T	59132201	3	4	130	1	0	0	0	0	1	0	0	0	11237	962	34	3	272	3	OR5AN1	11	59132201	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	924651	59132201	75874315	594	117570											
OSBP	5007	broad.mit.edu	37	chr11	59367845	59367845	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatggaacagtttatgattAtaaaggtaaaaaagaccatg	8	3	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59367845	C	C	59367845	1	2	130	0	1	0	0	0	0	0	0	0	11367	464	16	5		5	OSBP	11	59367845	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	235644	59367845	75638671	595	117571											
MS4A10	341116	broad.mit.edu	37	chr11	60561425	60561425	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccctttggacagctgttaCctttatttttcacctataga	5	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60561425	T	T	60561425	1	4	130	0	1	0	0	0	0	0	0	0	9949	522	18	4		4	MS4A10	11	60561425	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1193580	60561425	74445091	596	117572											
BEST1	7439	broad.mit.edu	37	chr11	61725728	61725728	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggacctcgttgtgcccgtCttcacgttcctgcagttctt	9	14	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61725728	A	A	61725728	2	1	130	1	0	0	0	0	0	0	0	1	1409	900	32	3		3	BEST1	11	61725728	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1164303	61725728	73280788	597	117573											
SLC22A10	387775	broad.mit.edu	37	chr11	63078464	63078464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatttattgtttctgttttGttttgtttttccagaaaaaa	5	4	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63078464	T	T	63078464	1	4	130	0	1	0	0	0	0	0	0	0	14554	1392	48	3		3	SLC22A10	11	63078464	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1352736	63078464	71928052	598	117574											
PYGM	5837	broad.mit.edu	37	chr11	64525993	64525993	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtccaggcccagctggaGgagtgagggtgacagtggtc	17	9	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64525993	A	A	64525993	1	1	130	0	1	0	0	0	0	0	0	0	12970	1015	35	4		4	PYGM	11	64525993	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1447529	64525993	70480523	599	117575											
KLC2	64837	broad.mit.edu	37	chr11	66033336	66033336	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccctcagggtttggacccCgcaagccagaccaaggtggt	12	14	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66033336	T	T	66033336	2	4	130	1	0	0	0	0	0	0	0	1	8405	639	23	4		4	KLC2	11	66033336	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1507343	66033336	68973180	600	117576											
SAPS3	55291	broad.mit.edu	37	chr11	68315605	68315605	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacataggaacttctgctaTcatggatttgttgctcaggc	10	9	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68315605	C	C	68315605	3	2	130	1	0	0	0	0	1	0	0	0	13950	1435	50	5	495	5	SAPS3	11	68315605	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	2282269	68315605	66690911	601	117577											
ANO1	55107	broad.mit.edu	37	chr11	69933978	69933978	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagaggccctcgggcaacCggaccctggtcaggagggtg	16	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69933978	A	A	69933978	2	1	130	1	0	0	0	0	0	0	0	1	695	643	23	1		1	ANO1	11	69933978	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1618373	69933978	65072538	602	117578											
CTTN	2017	broad.mit.edu	37	chr11	70279782	70279782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctacgatgagtacgagaacGatctggggatcacagccgtc	12	11	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70279782	T	T	70279782	3	4	130	1	0	0	0	0	1	0	0	0	4078	1058	37	3	1532	3	CTTN	11	70279782	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	345804	70279782	64726734	603	117579											
MYO7A	4647	broad.mit.edu	37	chr11	76877215	76877215	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgatgtcgccatggtaagcCgggtgcggtttctgttgttc	14	10	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76877215	G	G	76877215	1	3	130	0	1	0	0	0	0	0	0	0	10176	667	23	4		4	MYO7A	11	76877215	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	6597433	76877215	58129301	604	117580											
CCDC81	60494	broad.mit.edu	37	chr11	86120478	86120478	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggatccactccctgtgtTgcaggttgtgccttattttt	9	9	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86120478	A	A	86120478	1	1	130	0	1	0	0	0	0	0	0	0	2883	1827	63	5		5	CCDC81	11	86120478	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	9243263	86120478	48886038	605	117581											
ME3	10873	broad.mit.edu	37	chr11	86208988	86208988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggccccagagctcctgcCctgggcagtgggttacctca	12	14	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86208988	A	A	86208988	1	1	130	0	1	0	0	0	0	0	0	0	9512	638	22	2		2	ME3	11	86208988	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	88510	86208988	48797528	606	117582											
FAT3	120114	broad.mit.edu	37	chr11	92535025	92535025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagccgtcctcagcacctGggacagagacacatccgacg	12	14	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92535025	T	T	92535025	3	4	130	1	0	0	0	0	1	0	0	0	5748	1357	47	2	8880	2	FAT3	11	92535025	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	6326037	92535025	42471491	607	117583											
HEPHL1	341208	broad.mit.edu	37	chr11	93808458	93808458	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctgacctatctttacttCtcagcagttgatccaattaa	5	10	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93808458	A	A	93808458	3	1	130	1	0	0	0	0	1	0	0	0	7122	912	32	3	1657	3	HEPHL1	11	93808458	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1273433	93808458	41198058	608	117584											
CNTN5	53942	broad.mit.edu	37	chr11	99690518	99690518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtgtcaaaggaaaatggCtccagatagaataaaggagg	12	4	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99690518	A	A	99690518	1	1	130	0	1	0	0	0	0	0	0	0	3676	812	28	3		3	CNTN5	11	99690518	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	5882060	99690518	35315998	609	117585											
CNTN5	53942	broad.mit.edu	37	chr11	100095308	100095308	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttctgaattgttgttagAtaaactgtaaggccaaaaat	8	4	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100095308	G	G	100095308	1	3	130	0	1	0	0	0	0	0	0	0	3676	348	12	5		5	CNTN5	11	100095308	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	404790	100095308	34911208	610	117586											
MMP8	4317	broad.mit.edu	37	chr11	102595373	102595373	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagatgttcaatctcaaaCtaatcacccaaataatttct	4	9	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102595373	G	G	102595373	1	3	130	0	1	0	0	0	0	0	0	0	9762	580	20	4		4	MMP8	11	102595373	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2500065	102595373	32411143	611	117587											
EXPH5	23086	broad.mit.edu	37	chr11	108383289	108383289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcttaacttttcaataCaggatatatgatgccttatt	5	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108383289	A	A	108383289	3	1	130	1	0	0	0	0	1	0	0	0	5365	478	17	3	3028	3	EXPH5	11	108383289	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	5787916	108383289	26623227	612	117588											
FDX1	2230	broad.mit.edu	37	chr11	110327730	110327731	+	Nonsense_Mutation	DNP	GG	TT	TT													ttagatgcaatcactgatgaGgagaatgacatgctcgatct							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	110327731	TT	TT	110327730	4	4	130	1	0	0	0	0	0	1	0	0	5861	991	35	2	409	2	FDX1	11	110327730	Nonsense_Mutation	DNP	GG	TCGA-44-6778-01A-11D-1855-08	1944441	110327730	24678786	613	117589											
HTR3A	3359	broad.mit.edu	37	chr11	113854041	113854041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttcgccgggacagggGtggaggttgggggaccccag	21	9	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113854041	T	T	113854041	1	4	130	0	1	0	0	0	0	0	0	0	7514	1276	44	3		3	HTR3A	11	113854041	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3526311	113854041	21152475	614	117590											
SIDT2	51092	broad.mit.edu	37	chr11	117057128	117057128	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccctcaaccttcttcccAagcagggagatcccatgttg	7	16	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117057128	T	T	117057128	1	4	130	0	1	0	0	0	0	0	0	0	14416	145	5	5		5	SIDT2	11	117057128	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	3203087	117057128	17949388	615	117591											
CEP164	22897	broad.mit.edu	37	chr11	117265970	117265970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtctttcttctccctGttccccacattttgttcatc	3	15	4	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117265970	T	T	117265970	1	4	130	0	1	0	0	0	0	0	0	0	3279	1392	48	3		3	CEP164	11	117265970	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	208842	117265970	17740546	616	117592											
SORL1	6653	broad.mit.edu	37	chr11	121340568	121340568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagaatatgcatgaggtGggaggggaagaggccacctt	16	6	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121340568	T	T	121340568	1	4	130	0	1	0	0	0	0	0	0	0	15048	1363	47	2		2	SORL1	11	121340568	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	4074598	121340568	13665948	617	117593											
SORL1	6653	broad.mit.edu	37	chr11	121448146	121448146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagttgacagcactcatcCgttcatgcagtggttaacat	8	11	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121448146	A	A	121448146	1	1	130	0	1	0	0	0	0	0	0	0	15048	667	23	1		1	SORL1	11	121448146	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	107578	121448146	13558370	618	117594											
GRAMD1B	57476	broad.mit.edu	37	chr11	123471176	123471176	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattttcttttccaatctagCacttcttcacttcgtttggg	5	10	4	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123471176	T	T	123471176	3	4	130	1	0	0	0	0	1	0	0	0	6814	724	25	4	567	4	GRAMD1B	11	123471176	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2023030	123471176	11535340	619	117595											
OR6T1	219874	broad.mit.edu	37	chr11	123814678	123814678	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgagaatatgttgatctaTagtttggtctgcacgtgact	10	6	3	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123814678	C	C	123814678	1	2	130	0	1	0	0	0	0	0	0	0	11304	1421	49	5		5	OR6T1	11	123814678	5'Flank	SNP	T	TCGA-44-6778-01A-11D-1855-08	343502	123814678	11191838	620	117596											
VWA5A	4013	broad.mit.edu	37	chr11	124012205	124012205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaagggtggtgactgaaGccagtgtggatgggggggta	20	4	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124012205	T	T	124012205	1	4	130	0	1	0	0	0	0	0	0	0	17369	986	34	3		3	VWA5A	11	124012205	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	197527	124012205	10994311	621	117597											
PATE1	160065	broad.mit.edu	37	chr11	125617679	125617679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggaatatgcacagcaaCaacagaagaggcctgcatgg	12	8	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125617679	A	A	125617679	3	1	130	1	0	0	0	0	1	0	0	0	11567	478	17	3	223	3	PATE1	11	125617679	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1605474	125617679	9388837	622	117598											
IGSF9B	22997	broad.mit.edu	37	chr11	133790843	133790843	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccgagggctgtatgctGgtggtggcaggtaggactcc	18	8	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133790843	A	A	133790843	3	1	130	1	0	0	0	0	1	0	0	0	7676	1348	47	4	1280	4	IGSF9B	11	133790843	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	8173164	133790843	1215673	623	117599											
GLB1L2	89944	broad.mit.edu	37	chr11	134239728	134239728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgctgacagaagccggcGattacacggccaagtacatg	12	11	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134239728	T	T	134239728	3	4	130	1	0	0	0	0	1	0	0	0	6493	1058	37	3	1099	3	GLB1L2	11	134239728	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	448885	134239728	766788	624	117600											
LRTM2	654429	broad.mit.edu	37	chr12	1943774	1943774	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccgctgcctatggctgcAtctacgcctccctcatggcc	10	17	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1943774	T	T	1943774	3	4	130	1	0	0	0	0	1	0	0	0	9132	217	8	5	1010	5	LRTM2	12	1943774	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08		1943774	131908121	625	117601											
PLEKHG6	55200	broad.mit.edu	37	chr12	6435620	6435620	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacagaagctgaaggcagaGgagtatgttcaacagaagag	13	6	1	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6435620	A	A	6435620	2	1	130	1	0	0	0	0	0	0	0	1	12169	991	35	4		4	PLEKHG6	12	6435620	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	4491846	6435620	127416275	626	117602											
MFAP5	8076	broad.mit.edu	37	chr12	8813485	8813485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgactattgacccccaggGgtatccagtctatagcaaag	10	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8813485	T	T	8813485	3	4	130	1	0	0	0	0	1	0	0	0	9611	1232	43	2	485	2	MFAP5	12	8813485	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2377865	8813485	125038410	627	117603											
WBP11	51729	broad.mit.edu	37	chr12	14940012	14940012	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgtcacagtagccctTccatctctttcatgaaagcc	6	13	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14940012	C	C	14940012	3	2	130	1	0	0	0	0	1	0	0	0	17385	1783	62	5	16	5	WBP11	12	14940012	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	6126527	14940012	118911883	628	117604											
EPS8	2059	broad.mit.edu	37	chr12	15777428	15777428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatctctataatccttgaCcccagtaggacctacagtct	5	14	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15777428	A	A	15777428	1	1	130	0	1	0	0	0	0	0	0	0	5236	522	18	3		3	EPS8	12	15777428	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	837416	15777428	118074467	629	117605											
PIK3C2G	5288	broad.mit.edu	37	chr12	18552630	18552630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagatatttatggttttatCgcttctactgcaataatgaa	6	5	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18552630	A	A	18552630	3	1	130	1	0	0	0	0	1	0	0	0	12006	884	31	3	2095	3	PIK3C2G	12	18552630	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2775202	18552630	115299265	630	117606											
SOX5	6660	broad.mit.edu	37	chr12	24048926	24048926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacctctccatctgcttccCcatacggagaggctggtcgc	9	16	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24048926	T	T	24048926	3	4	130	1	0	0	0	0	1	0	0	0	15068	623	22	4	2286	4	SOX5	12	24048926	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	5496296	24048926	109802969	631	117607											
ARNTL2	56938	broad.mit.edu	37	chr12	27554138	27554138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgggcctacagtcttctGggagggagtacactcaccac	12	11	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27554138	T	T	27554138	1	4	130	0	1	0	0	0	0	0	0	0	972	1363	47	2		2	ARNTL2	12	27554138	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3505212	27554138	106297757	632	117608											
IPO8	10526	broad.mit.edu	37	chr12	30843422	30843422	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttataaaggataaaaaacCaactcacctgcctgtcgtac	5	10	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30843422	T	T	30843422	1	4	130	0	1	0	0	0	0	0	0	0	7868	609	21	4		4	IPO8	12	30843422	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	3289284	30843422	103008473	633	117609											
DENND5B	160518	broad.mit.edu	37	chr12	31630901	31630901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatctgaaatctgtggagCagaaagcaattaactcctaa	9	8	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31630901	A	A	31630901	1	1	130	0	1	0	0	0	0	0	0	0	4477	725	25	3		3	DENND5B	12	31630901	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	787479	31630901	102220994	634	117610											
SYT10	341359	broad.mit.edu	37	chr12	33532767	33532767	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaggaactcacaagcttacCtccagcaatgggtgccagtg	10	11	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33532767	G	G	33532767	3	3	130	1	0	0	0	0	1	0	0	0	15585	695	24	4	79	4	SYT10	12	33532767	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1901866	33532767	100319128	635	117611											
ABCD2	225	broad.mit.edu	37	chr12	39947896	39947896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcaaagcgccaacctcCttcaccatcaaactgtaata	4	13	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39947896	T	T	39947896	3	4	130	1	0	0	0	0	1	0	0	0	61	690	24	4	185	4	ABCD2	12	39947896	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	6415129	39947896	93903999	636	117612											
ADAMTS20	80070	broad.mit.edu	37	chr12	43823527	43823527	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtgtaagtacacagcTctgttcagaagaaaaatggt	11	6	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43823527	C	C	43823527	3	2	130	1	0	0	0	0	1	0	0	0	266	1565	54	5	2413	5	ADAMTS20	12	43823527	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	3875631	43823527	90028368	637	117613											
TWF1	5756	broad.mit.edu	37	chr12	44193198	44193198	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagactttgtagttgtaactTacctcattgattttaatctg	6	6	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44193198	A	A	44193198	1	1	130	0	1	0	0	0	0	0	0	0	16907	1769	61	5		5	TWF1	12	44193198	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	369671	44193198	89658697	638	117614											
C1QL4	338761	broad.mit.edu	37	chr12	49726876	49726876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccggagaaggtgctgtaCttgttggtgttgccgccgtg	16	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49726876	A	A	49726876	3	1	130	1	0	0	0	0	1	0	0	0	1981	564	20	3	42	3	C1QL4	12	49726876	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	5533678	49726876	84125019	639	117615											
NCKAP5L	57701	broad.mit.edu	37	chr12	50190676	50190676	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggttcaactgtctgcGggccagggcaccgagcaggg	16	13	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50190676	A	A	50190676	3	1	130	1	0	0	0	0	1	0	0	0	10319	1116	39	4	3061	4	NCKAP5L	12	50190676	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	463800	50190676	83661219	640	117616											
KRT79	338785	broad.mit.edu	37	chr12	53223985	53223985	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagtaccctggcagccaaAggaccacctcccccactcca	6	21	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53223985	G	G	53223985	1	3	130	0	1	0	0	0	0	0	0	0	8563	87	3	5		5	KRT79	12	53223985	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	3033309	53223985	80627910	641	117617											
NCKAP1L	3071	broad.mit.edu	37	chr12	54926117	54926117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcttgtaagggagagcGggttctgaagaacaccatag	14	6	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54926117	T	T	54926117	1	4	130	0	1	0	0	0	0	0	0	0	10317	1131	39	1		1	NCKAP1L	12	54926117	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1702132	54926117	78925778	642	117618											
OR9K2	441639	broad.mit.edu	37	chr12	55523769	55523769	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgttgggatgatgaccAttattatgactgatcctcgg	12	6	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55523769	T	T	55523769	3	4	130	1	0	0	0	0	1	0	0	0	11348	217	8	5	219	5	OR9K2	12	55523769	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	597652	55523769	78328126	643	117619											
ERBB3	2065	broad.mit.edu	37	chr12	56482201	56482201	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggcagcacttaagggatcTagggtggcagatggggacaa	17	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56482201	C	C	56482201	1	2	130	0	1	0	0	0	0	0	0	0	5250	1537	53	5		5	ERBB3	12	56482201	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	958432	56482201	77369694	644	117620											
TIMELESS	8914	broad.mit.edu	37	chr12	56816456	56816456	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaggctccagtccctgctcCtctcttggataactttaggt	8	12	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56816456	G	G	56816456	1	3	130	0	1	0	0	0	0	0	0	0	16027	696	24	4		4	TIMELESS	12	56816456	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	334255	56816456	77035439	645	117621											
LRP1	4035	broad.mit.edu	37	chr12	57573929	57573929	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaagggccccgtgggtacGagcttccctgcccaccccca	11	18	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57573929	T	T	57573929	1	4	130	0	1	0	0	0	0	0	0	0	9038	1073	37	3		3	LRP1	12	57573929	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	757473	57573929	76277966	646	117622											
LRP1	4035	broad.mit.edu	37	chr12	57603849	57603849	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcaagaaatgcgagtggctCtgcctgctgagccccagtgg	14	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57603849	G	G	57603849	2	3	130	1	0	0	0	0	0	0	0	1	9038	900	32	4		4	LRP1	12	57603849	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	29920	57603849	76248046	647	117623											
MARS	4141	broad.mit.edu	37	chr12	57894234	57894235	+	Frame_Shift_Del	DEL	TG	-	-													tggagggcgtgtgtcccttcTgtggctatgaggaggctcgg							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57894235	-	-	57894234	7	5	130	1	0	1	0	1	0	0	0	0	9408	1580	55	0	1260	0	MARS	12	57894234	Frame_Shift_Del	DEL	TG	TCGA-44-6778-01A-11D-1855-08	290385	57894234	75957661	648	117624											
KIF5A	3798	broad.mit.edu	37	chr12	57975157	57975157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaccagggcaaatgcagGgtcatagcctcctcatggtt	13	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57975157	A	A	57975157	1	1	130	0	1	0	0	0	0	0	0	0	8375	1247	43	4		4	KIF5A	12	57975157	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	80923	57975157	75876738	649	117625											
LEMD3	23592	broad.mit.edu	37	chr12	65609844	65609844	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaattgttttaacttttatAgttgctaaaaatgttttgaa	6	2	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65609844	G	G	65609844	1	3	130	0	1	0	0	0	0	0	0	0	8793	435	15	5		5	LEMD3	12	65609844	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	7634687	65609844	68242051	650	117626											
PTPRB	5787	broad.mit.edu	37	chr12	70980899	70980899	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgaattctttggcatcTttggagagtgacttgtggat	12	4	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70980899	A	A	70980899	3	1	130	1	0	0	0	0	1	0	0	0	12904	1606	56	5	4552	5	PTPRB	12	70980899	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	5371055	70980899	62870996	651	117627											
TRHDE	29953	broad.mit.edu	37	chr12	72969365	72969365	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaataaaaacttgtgcctgCaagacttcctgtattaaact	5	10	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72969365	G	G	72969365	1	3	130	0	1	0	0	0	0	0	0	0	16603	725	25	4		4	TRHDE	12	72969365	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1988466	72969365	60882530	652	117628											
PPFIA2	8499	broad.mit.edu	37	chr12	81762871	81762871	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccaatgattggggggtaaTagttcttaatatacatactc	8	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81762871	G	G	81762871	1	3	130	0	1	0	0	0	0	0	0	0	12406	1421	49	5		5	PPFIA2	12	81762871	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	8793506	81762871	52089024	653	117629											
TSPAN19	144448	broad.mit.edu	37	chr12	85413594	85413594	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagaaattgatggttcctcaAgagtaccatcatgaaaagaa	8	6	2	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85413594	T	T	85413594	1	4	130	0	1	0	0	0	0	0	0	0	16768	87	3	5		5	TSPAN19	12	85413594	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	3650723	85413594	48438301	654	117630											
TMPO	7112	broad.mit.edu	37	chr12	98938261	98938261	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtatagatggtccagtaatTtcagagagtactcccatagc	9	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98938261	A	A	98938261	2	1	130	1	0	0	0	0	0	0	0	1	16360	1829	64	5		5	TMPO	12	98938261	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	13524667	98938261	34913634	655	117631											
ANKS1B	56899	broad.mit.edu	37	chr12	99898150	99898150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaactacattgggggaaCtttcattttgataacatagt	9	5	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99898150	A	A	99898150	1	1	130	0	1	0	0	0	0	0	0	0	689	580	20	3		3	ANKS1B	12	99898150	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	959889	99898150	33953745	656	117632											
GAS2L3	283431	broad.mit.edu	37	chr12	101005823	101005823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagaaagatgctgcatcaGgttcattctttgctcgggac	11	8	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101005823	T	T	101005823	3	4	130	1	0	0	0	0	1	0	0	0	6310	1000	35	2	363	2	GAS2L3	12	101005823	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1107673	101005823	32846072	657	117633											
ANO4	121601	broad.mit.edu	37	chr12	101368503	101368503	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgttaatctctttttagtTttttcttcttcacctcttac	2	10	5	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101368503	G	G	101368503	1	3	130	0	1	0	0	0	0	0	0	0	699	1856	64	5		5	ANO4	12	101368503	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	362680	101368503	32483392	658	117634											
STAB2	55576	broad.mit.edu	37	chr12	104099535	104099535	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataattgaatcatactaactActgcagcaccattgggaaaa	6	8	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104099535	G	G	104099535	1	3	130	0	1	0	0	0	0	0	0	0	15356	406	14	5		5	STAB2	12	104099535	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	2731032	104099535	29752360	659	117635											
BTBD11	121551	broad.mit.edu	37	chr12	107937684	107937684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaatgttggcttcctggaGgatctgaaatcttccttctg	10	10	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107937684	T	T	107937684	1	4	130	0	1	0	0	0	0	0	0	0	1548	1015	35	2		2	BTBD11	12	107937684	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3838149	107937684	25914211	660	117636											
MYL2	4633	broad.mit.edu	37	chr12	111350930	111350930	+	Frame_Shift_Del	DEL	G	-	-													gaaaacctctccgcctgcgtGgtcagcatttcccgaacgct							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111350930	-	-	111350930	7	5	130	1	0	1	0	1	0	0	0	0	10141	1335	47	0	136	0	MYL2	12	111350930	Frame_Shift_Del	DEL	G	TCGA-44-6778-01A-11D-1855-08	3413246	111350930	22500965	661	117637											
OAS3	4940	broad.mit.edu	37	chr12	113403519	113403519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctaagccatgcttcaaGggttgagccacctgccatgt	11	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113403519	T	T	113403519	1	4	130	0	1	0	0	0	0	0	0	0	10896	1015	35	2		2	OAS3	12	113403519	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2052589	113403519	20448376	662	117638											
GLT1D1	144423	broad.mit.edu	37	chr12	129428905	129428905	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcttgttggtttctgttcTggagaatgtttccaacaccg	9	8	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129428905	A	A	129428905	1	1	130	0	1	0	0	0	0	0	0	0	6529	1595	55	5		5	GLT1D1	12	129428905	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	16025386	129428905	4422990	663	117639											
EP400	57634	broad.mit.edu	37	chr12	132512719	132512719	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgggtccctggatggccGtcgtgggaaggaggccgggc	21	10	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132512719	A	A	132512719	3	1	130	1	0	0	0	0	1	0	0	0	5191	1145	40	4	5366	4	EP400	12	132512719	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3083814	132512719	1339176	664	117640											
EP400	57634	broad.mit.edu	37	chr12	132537778	132537778	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagagaaaaaggtcagcgcCctgggcccttctgcttgagt	12	10	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132537778	T	T	132537778	1	4	130	0	1	0	0	0	0	0	0	0	5191	638	22	4		4	EP400	12	132537778	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	25059	132537778	1314117	665	117641											
IFT88	8100	broad.mit.edu	37	chr13	21217673	21217673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattccaaccgatcctcaaGttttatctaagctaggagaa	6	9	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21217673	T	T	21217673	3	4	130	1	0	0	0	0	1	0	0	0	7636	1029	36	3	1863	3	IFT88	13	21217673	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08		21217673	93952205	666	117642											
SGCG	6445	broad.mit.edu	37	chr13	23821265	23821265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccagaatcaaagatctgtTgctttcccacaccttggcca	7	13	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23821265	A	A	23821265	1	1	130	0	1	0	0	0	0	0	0	0	14316	1827	63	5		5	SGCG	13	23821265	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	2603592	23821265	91348613	667	117643											
ATP12A	479	broad.mit.edu	37	chr13	25276228	25276228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtaagcacaggagcagcaTagtaaaaattccagtttata	9	7	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25276228	C	C	25276228	1	2	130	0	1	0	0	0	0	0	0	0	1126	1421	49	5		5	ATP12A	13	25276228	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1454963	25276228	89893650	668	117644											
NUPL1	9818	broad.mit.edu	37	chr13	25914357	25914357	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgatgcagtaattaaattgCatcccaggagatttataaag	8	5	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25914357	G	G	25914357	1	3	130	0	1	0	0	0	0	0	0	0	10869	725	25	4		4	NUPL1	13	25914357	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	638129	25914357	89255521	669	117645											
FLT1	2321	broad.mit.edu	37	chr13	28891568	28891568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagaatccataaaacatcCcctctcaggaatgccctggt	6	13	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28891568	A	A	28891568	1	1	130	0	1	0	0	0	0	0	0	0	5999	638	22	2		2	FLT1	13	28891568	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2977211	28891568	86278310	670	117646											
DCLK1	9201	broad.mit.edu	37	chr13	36397068	36397068	+	Intron	DEL	C	-	-													cagacgggccagtggggccaCctgcagaggccattgacaaa							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36397068	-	-	36397068	6	5	130	0	1	1	0	1	0	0	0	0	4324	522	18	0		0	DCLK1	13	36397068	Intron	DEL	C	TCGA-44-6778-01A-11D-1855-08	7505500	36397068	78772810	671	117647											
FAM124A	220108	broad.mit.edu	37	chr13	51826250	51826250	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgagggacataggcgagctCgtgcctctcctgcccaaccc	12	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51826250	A	A	51826250	2	1	130	1	0	0	0	0	0	0	0	1	5471	871	31	3		3	FAM124A	13	51826250	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	15429182	51826250	63343628	672	117648											
VPS36	51028	broad.mit.edu	37	chr13	52990248	52990248	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctaatagaaacacacagcaGaaaaaaaatgtaattaattt	4	6	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52990248	A	A	52990248	1	1	130	0	1	0	0	0	0	0	0	0	17331	957	33	4		4	VPS36	13	52990248	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1163998	52990248	62179630	673	117649											
POTEG	404785	broad.mit.edu	37	chr14	19573144	19573144	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataagggtggtgatagaaaGgtatacttttatattcaaat	9	2	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19573144	A	A	19573144	2	1	130	1	0	0	0	0	0	0	0	1	12362	1014	35	4		4	POTEG	14	19573144	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08		19573144	87776396	674	117650											
NDRG2	57447	broad.mit.edu	37	chr14	21499135	21499135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaggtaatgcattcatGctccaaagtttctggatttc	9	7	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21499135	T	T	21499135	1	4	130	0	1	0	0	0	0	0	0	0	10347	1334	46	3		3	NDRG2	14	21499135	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1925991	21499135	85850405	675	117651											
PRMT5	10419	broad.mit.edu	37	chr14	23393094	23393094	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacagaggcagtgaagcagTggctctcaaactcatatgat	11	9	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23393094	A	A	23393094	1	1	130	0	1	0	0	0	0	0	0	0	12645	1711	59	5		5	PRMT5	14	23393094	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1893959	23393094	83956446	676	117652											
FOXG1	2290	broad.mit.edu	37	chr14	29237772	29237772	+	Frame_Shift_Del	DEL	G	-	-													cacccgtcaatgacttcgcaGagcagcacgtccatgagcgc							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29237772	-	-	29237772	7	5	130	1	0	1	0	1	0	0	0	0	6067	933	33	0	1289	0	FOXG1	14	29237772	Frame_Shift_Del	DEL	G	TCGA-44-6778-01A-11D-1855-08	5844678	29237772	78111768	677	117653											
AKAP6	9472	broad.mit.edu	37	chr14	33147594	33147594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagctgtacagcgagcaGtataccagcagcagcaagcg	11	12	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33147594	T	T	33147594	3	4	130	1	0	0	0	0	1	0	0	0	455	1020	36	3	2834	3	AKAP6	14	33147594	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3909822	33147594	74201946	678	117654											
BAZ1A	11177	broad.mit.edu	37	chr14	35253077	35253077	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcttcaataaaatccctagTtgaaactagggtcagtagct	7	8	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35253077	A	A	35253077	3	1	130	1	0	0	0	0	1	0	0	0	1334	1725	60	5	2834	5	BAZ1A	14	35253077	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	2105483	35253077	72096463	679	117655											
FSCB	84075	broad.mit.edu	37	chr14	44974010	44974010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctcctataggaaactcCtcagtcagaagcaaatcagc	7	13	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44974010	A	A	44974010	3	1	130	1	0	0	0	0	1	0	0	0	6126	680	24	2	300	2	FSCB	14	44974010	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	9720933	44974010	62375530	680	117656											
C14orf106	55320	broad.mit.edu	37	chr14	45711635	45711635	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctttgagtgaaaaatttGtttagccaactgagctctag	8	8	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45711635	C	C	45711635	3	2	130	1	0	0	0	0	1	0	0	0	1751	1386	48	4	2709	4	C14orf106	14	45711635	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	737625	45711635	61637905	681	117657											
MDGA2	161357	broad.mit.edu	37	chr14	47311067	47311067	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttgtttgttcaatgtcCatttacaaagactctttctt	5	7	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47311067	A	A	47311067	1	1	130	0	1	0	0	0	0	0	0	0	9500	609	21	2		2	MDGA2	14	47311067	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	1599432	47311067	60038473	682	117658											
C14orf104	55172	broad.mit.edu	37	chr14	50100519	50100519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagatggctcctccacgCtgcccggcggtgaccccgcg	14	17	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50100519	A	A	50100519	3	1	130	1	0	0	0	0	1	0	0	0	1749	797	28	3	1176	3	C14orf104	14	50100519	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	2789452	50100519	57249021	683	117659											
PSMC6	5706	broad.mit.edu	37	chr14	53173934	53173934	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctatgagagacggcttctCatcatggcggaccctagaga	11	12	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53173934	T	T	53173934	2	4	130	1	0	0	0	0	0	0	0	1	12797	813	29	4		4	PSMC6	14	53173934	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	3073415	53173934	54175606	684	117660											
OTX2	5015	broad.mit.edu	37	chr14	57270899	57270899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggttctgcctgcatctGccctacctgcaccctcgact	9	16	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57270899	T	T	57270899	1	4	130	0	1	0	0	0	0	0	0	0	11415	1334	46	3		3	OTX2	14	57270899	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	4096965	57270899	50078641	685	117661											
EXOC5	10640	broad.mit.edu	37	chr14	57684697	57684697	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagacaaaaccaacaactTgcctatcaatgccagtatcc	5	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57684697	G	G	57684697	1	3	130	0	1	0	0	0	0	0	0	0	5349	1827	63	5		5	EXOC5	14	57684697	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	413798	57684697	49664843	686	117662											
SLC35F4	341880	broad.mit.edu	37	chr14	58056110	58056110	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacccaagatgatgatacTgacaagatgatcaagagtcc	8	10	1	7			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58056110	A	A	58056110	2	1	130	1	0	0	0	0	0	0	0	1	14705	1567	55	5		5	SLC35F4	14	58056110	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	371413	58056110	49293430	687	117663											
ARID4A	5926	broad.mit.edu	37	chr14	58772783	58772783	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatctgatggatcttttcAggaagctattatcagcaagt	9	7	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58772783	G	G	58772783	3	3	130	1	0	0	0	0	1	0	0	0	921	188	7	5	241	5	ARID4A	14	58772783	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	716673	58772783	48576757	688	117664											
ARID4A	5926	broad.mit.edu	37	chr14	58830859	58830859	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattggtaatataaaaacctGtataatataataatatttcc	3	5	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58830859	C	C	58830859	1	2	130	0	1	0	0	0	0	0	0	0	921	1392	48	4		4	ARID4A	14	58830859	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	58076	58830859	48518681	689	117665											
KCNH5	27133	broad.mit.edu	37	chr14	63416748	63416748	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaataagatggattaaaTacctttctgtaaacaaagta	6	5	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63416748	A	A	63416748	1	1	130	0	1	0	0	0	0	0	0	0	8105	1421	49	5		5	KCNH5	14	63416748	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	4585889	63416748	43932792	690	117666											
PPP2R5E	5529	broad.mit.edu	37	chr14	63920523	63920523	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcattttaagatcagataGcgtgtccatgaagtcaaaaa	7	6	3	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63920523	C	C	63920523	3	2	130	1	0	0	0	0	1	0	0	0	12497	962	34	4	1213	4	PPP2R5E	14	63920523	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	503775	63920523	43429017	691	117667											
SPTB	6710	broad.mit.edu	37	chr14	65241820	65241820	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcctgggcaccctggcTggtatcccctgcccgaacag	11	17	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65241820	A	A	65241820	1	1	130	0	1	0	0	0	0	0	0	0	15236	1595	55	5		5	SPTB	14	65241820	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1321297	65241820	42107720	692	117668											
FNTB	2342	broad.mit.edu	37	chr14	65510871	65510871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgtctatggcagtgtgGggagggaaggaaagaaaacc	16	5	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65510871	T	T	65510871	1	4	130	0	1	0	0	0	0	0	0	0	6036	1247	43	2		2	FNTB	14	65510871	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	269051	65510871	41838669	693	117669											
ZNF410	57862	broad.mit.edu	37	chr14	74364978	74364978	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcaatggtgaggcccgtcGgcattttccttgccactatt	10	12	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74364978	C	C	74364978	1	2	130	0	1	0	0	0	0	0	0	0	18017	1131	39	4		4	ZNF410	14	74364978	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	8854107	74364978	32984562	694	117670											
ISCA2	122961	broad.mit.edu	37	chr14	74961494	74961494	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtcttttttgtgtttgCgatactccttaatgccttcc	9	9	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74961494	T	T	74961494	1	4	130	0	1	0	0	0	0	0	0	0	7921	783	27	4		4	ISCA2	14	74961494	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	596516	74961494	32388046	695	117671											
VIPAR	63894	broad.mit.edu	37	chr14	77901515	77901515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactatacatacccattaTtaatagagtacataaaagta	4	6	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77901515	C	C	77901515	1	2	130	0	1	0	0	0	0	0	0	0	17295	1508	52	5		5	VIPAR	14	77901515	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	2940021	77901515	29448025	696	117672											
C14orf145	145508	broad.mit.edu	37	chr14	81289166	81289166	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcatttttgataactgtgTaaacttctgttgactgcaca	8	7	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81289166	A	A	81289166	1	1	130	0	1	0	0	0	0	0	0	0	1762	1653	57	5		5	C14orf145	14	81289166	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	3387651	81289166	26060374	697	117673											
FLRT2	23768	broad.mit.edu	37	chr14	86088698	86088698	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgcgtaagctggaacgGctggatatatccaacaacca	9	10	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86088698	T	T	86088698	2	4	130	1	0	0	0	0	0	0	0	1	5997	1190	42	3		3	FLRT2	14	86088698	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	4799532	86088698	21260842	698	117674											
TTC7B	145567	broad.mit.edu	37	chr14	91060070	91060070	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcggaacacacacacccctTcccccatgatgtttctaaga	6	16	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91060070	A	A	91060070	1	1	130	0	1	0	0	0	0	0	0	0	16839	1798	62	5		5	TTC7B	14	91060070	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	4971372	91060070	16289470	699	117675											
SLC24A4	123041	broad.mit.edu	37	chr14	92900349	92900349	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtgtaagtcgtcctcccaGagtggtcacaaaacttctgg	11	10	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92900349	T	T	92900349	1	4	130	0	1	0	0	0	0	0	0	0	14582	957	33	3		3	SLC24A4	14	92900349	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1840279	92900349	14449191	700	117676											
TCL1B	9623	broad.mit.edu	37	chr14	96152719	96152719	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggcccgggccccacccaCgccggagctgctccatttaa	11	19	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96152719	A	A	96152719	1	1	130	0	1	0	0	0	0	0	0	0	15827	551	19	3		3	TCL1B	14	96152719	5'Flank	SNP	C	TCGA-44-6778-01A-11D-1855-08	3252370	96152719	11196821	701	117677											
ATG2B	55102	broad.mit.edu	37	chr14	96779353	96779353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaggtaaatatcaattggTatgtttcgaacagctttgtt	8	4	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96779353	A	A	96779353	1	1	130	0	1	0	0	0	0	0	0	0	1098	1653	57	5		5	ATG2B	14	96779353	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	626634	96779353	10570187	702	117678											
AK7	122481	broad.mit.edu	37	chr14	96890213	96890213	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacatttcagcggcctgtGccttgggagaccccgagccc	12	15	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96890213	A	A	96890213	1	1	130	0	1	0	0	0	0	0	0	0	444	1334	46	4		4	AK7	14	96890213	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	110860	96890213	10459327	703	117679											
DLK1	8788	broad.mit.edu	37	chr14	101193398	101193398	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggaccgcgaccccggccGcccagagatgaccgcgaccg	14	19	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101193398	A	A	101193398	1	1	130	0	1	0	0	0	0	0	0	0	4604	1102	38	4		4	DLK1	14	101193398	5'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	4303185	101193398	6156142	704	117680											
AHNAK2	113146	broad.mit.edu	37	chr14	105407065	105407065	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggggatggcagctgggtgCttggcaaggggcactgcact	18	9	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105407065	T	T	105407065	3	4	130	1	0	0	0	0	1	0	0	0	415	797	28	4	2668	4	AHNAK2	14	105407065	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	4213667	105407065	1942475	705	117681											
C15orf2	23742	broad.mit.edu	37	chr15	24922707	24922707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaaacgcatctgcccacCtaacctcacagactgcggta	6	16	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922707	A	A	24922707	3	1	130	1	0	0	0	0	1	0	0	0	1797	680	24	2	1695	2	C15orf2	15	24922707	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08		24922707	77608685	706	117682											
GABRG3	2567	broad.mit.edu	37	chr15	27586107	27586107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagattcaatgatgcatgCttttgttttggggtgtgttt	12	4	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27586107	A	A	27586107	1	1	130	0	1	0	0	0	0	0	0	0	6233	812	28	3		3	GABRG3	15	27586107	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2663400	27586107	74945285	707	117683											
HERC2	8924	broad.mit.edu	37	chr15	28441803	28441803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctagccatgtcatactaCattgtagttatttgtttttt	5	8	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28441803	A	A	28441803	1	1	130	0	1	0	0	0	0	0	0	0	7125	493	17	3		3	HERC2	15	28441803	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	855696	28441803	74089589	708	117684											
RYR3	6263	broad.mit.edu	37	chr15	34048486	34048486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtaactctggccaactttGtgttacctgtgtcttcgtag	9	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34048486	T	T	34048486	1	4	130	0	1	0	0	0	0	0	0	0	13881	1392	48	3		3	RYR3	15	34048486	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	5606683	34048486	68482906	709	117685											
ITPKA	3706	broad.mit.edu	37	chr15	41794614	41794614	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccagaaagcggacggctcCtgcagcaccgacttcaagac	10	14	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41794614	T	T	41794614	2	4	130	1	0	0	0	0	0	0	0	1	7987	668	24	4		4	ITPKA	15	41794614	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	7746128	41794614	60736778	710	117686											
DTWD1	56986	broad.mit.edu	37	chr15	49917565	49917565	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtggtggttccagaatgttCtactgctatacatgttatgt	10	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49917565	T	T	49917565	2	4	130	1	0	0	0	0	0	0	0	1	4831	912	32	4		4	DTWD1	15	49917565	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	8122951	49917565	52613827	711	117687											
SCG3	29106	broad.mit.edu	37	chr15	51975475	51975475	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgaacctgctaaaggcaAtaacagaaaaggaaaaaatt	7	6	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51975475	G	G	51975475	3	3	130	1	0	0	0	0	1	0	0	0	14004	101	4	5	255	5	SCG3	15	51975475	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	2057910	51975475	50555917	712	117688											
DYX1C1	161582	broad.mit.edu	37	chr15	55724738	55724738	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaatgctgttccacgtcgTacatgtgccttcattcttgc	8	12	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55724738	A	A	55724738	2	1	130	1	0	0	0	0	0	0	0	1	4902	1625	57	5		5	DYX1C1	15	55724738	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	3749263	55724738	46806654	713	117689											
RORA	6095	broad.mit.edu	37	chr15	60789856	60789856	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacaccgtcaggcaagaaCaggcataagcatcaaagatc	9	11	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60789856	T	T	60789856	1	4	130	0	1	0	0	0	0	0	0	0	13639	493	17	4		4	RORA	15	60789856	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	5065118	60789856	41741536	714	117690											
DPP8	54878	broad.mit.edu	37	chr15	65799565	65799565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccaaatcataggaataaCaacatttaatcctacctgaa	3	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65799565	A	A	65799565	1	1	130	0	1	0	0	0	0	0	0	0	4772	493	17	3		3	DPP8	15	65799565	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	5009709	65799565	36731827	715	117691											
MAP2K1	5604	broad.mit.edu	37	chr15	66777401	66777401	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggactgtctctggtagagaTggcggttgggaggtatccca	17	7	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66777401	C	C	66777401	3	2	130	1	0	0	0	0	1	0	0	0	9328	1464	51	5	793	5	MAP2K1	15	66777401	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	977836	66777401	35753991	716	117692											
HCN4	10021	broad.mit.edu	37	chr15	73615894	73615894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagacggtgtgtccacctggGacgggctgctggcgggcgag	19	10	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73615894	T	T	73615894	3	4	130	1	0	0	0	0	1	0	0	0	7065	1174	41	3	1075	3	HCN4	15	73615894	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	6838493	73615894	28915498	717	117693											
ETFA	2108	broad.mit.edu	37	chr15	76552821	76552821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcatgagaagagaccacCagtggctgactccagggtcc	13	11	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76552821	A	A	76552821	1	1	130	0	1	0	0	0	0	0	0	0	5311	609	21	2		2	ETFA	15	76552821	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2936927	76552821	25978571	718	117694											
ADAMTS7	11173	broad.mit.edu	37	chr15	79080466	79080466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtatcaagatcttgccCctctgcttccctctaccccg	5	17	5	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79080466	A	A	79080466	1	1	130	0	1	0	0	0	0	0	0	0	271	638	22	2		2	ADAMTS7	15	79080466	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2527645	79080466	23450926	719	117695											
KIAA1199	57214	broad.mit.edu	37	chr15	81224242	81224242	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagttatatgatggccccatCaacatccaaaactgcacttt	5	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81224242	A	A	81224242	2	1	130	1	0	0	0	0	0	0	0	1	8283	816	29	3		3	KIAA1199	15	81224242	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	2143776	81224242	21307150	720	117696											
CPEB1	64506	broad.mit.edu	37	chr15	83221441	83221441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccttggctttgcagcaggGcgtttcttccaagaaagaag	12	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83221441	T	T	83221441	1	4	130	0	1	0	0	0	0	0	0	0	3832	1218	42	3		3	CPEB1	15	83221441	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1997199	83221441	19309951	721	117697											
RGS11	8786	broad.mit.edu	37	chr16	323726	323726	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggtagcctgggttgggcgCctgcaggcggggcggggcag	23	10	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	323726	T	T	323726	1	4	130	0	1	0	0	0	0	0	0	0	13403	754	26	4		4	RGS11	16	323726	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08		323726	90031027	722	117698											
CACNA1H	8912	broad.mit.edu	37	chr16	1262143	1262143	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaggaggcgcaggagtaaGgcgctcccggtggcggtggc	21	9	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1262143	C	C	1262143	1	2	130	0	1	0	0	0	0	0	0	0	2571	1015	35	4		4	CACNA1H	16	1262143	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	938417	1262143	89092610	723	117699											
RAB26	25837	broad.mit.edu	37	chr16	2203211	2203211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacgtggacttggccttcaCagccatagcaaagtaagtcc	9	12	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2203211	A	A	2203211	3	1	130	1	0	0	0	0	1	0	0	0	13021	478	17	3	686	3	RAB26	16	2203211	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	941068	2203211	88151542	724	117700											
COQ7	10229	broad.mit.edu	37	chr16	19079217	19079217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcctccggggcgctggcGggcggggcggggtctgtagt	22	11	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19079217	T	T	19079217	1	4	130	0	1	0	0	0	0	0	0	0	3782	1131	39	1		1	COQ7	16	19079217	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	16876006	19079217	71275536	725	117701											
GPRC5B	51704	broad.mit.edu	37	chr16	19884010	19884010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccacaatgccccagatgGcgtccaggtcgcacagggac	11	16	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19884010	T	T	19884010	3	4	130	1	0	0	0	0	1	0	0	0	6791	1203	42	3	1065	3	GPRC5B	16	19884010	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	804793	19884010	70470743	726	117702											
GPR139	124274	broad.mit.edu	37	chr16	20043415	20043415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaaagtgtggcaaagatgGaggtaatggtgaacaagatg	14	5	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043415	T	T	20043415	3	4	130	1	0	0	0	0	1	0	0	0	6713	1174	41	3	361	3	GPR139	16	20043415	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	159405	20043415	70311338	727	117703											
ACSM5	54988	broad.mit.edu	37	chr16	20448612	20448612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accggatcgggcctgttgaaGtggaaagtgccctggcagag	16	9	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20448612	T	T	20448612	3	4	130	1	0	0	0	0	1	0	0	0	187	1029	36	3	1501	3	ACSM5	16	20448612	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	405197	20448612	69906141	728	117704											
SCNN1B	6338	broad.mit.edu	37	chr16	23360173	23360173	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagcgtctccctctccGtaggcttcaagaccatggac	10	14	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23360173	C	C	23360173	3	2	130	1	0	0	0	0	1	0	0	0	14041	1145	40	4	255	4	SCNN1B	16	23360173	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2911561	23360173	66994580	729	117705											
DCTN5	84516	broad.mit.edu	37	chr16	23669725	23669725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgaaacattctgtcagaGtggattgtaacataactcag	8	6	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23669725	T	T	23669725	1	4	130	0	1	0	0	0	0	0	0	0	4343	1044	36	3		3	DCTN5	16	23669725	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	309552	23669725	66685028	730	117706											
RABEP2	79874	broad.mit.edu	37	chr16	28926032	28926032	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctcggccctcagcagcttCgccttcagctcctcgatctc	7	19	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28926032	A	A	28926032	2	1	130	1	0	0	0	0	0	0	0	1	13070	871	31	3		3	RABEP2	16	28926032	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	5256307	28926032	61428721	731	117707											
ITGAD	3681	broad.mit.edu	37	chr16	31427738	31427738	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgttattggcccagagctCcagagttcctgggattctgc	11	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31427738	A	A	31427738	1	1	130	0	1	0	0	0	0	0	0	0	7954	870	30	3		3	ITGAD	16	31427738	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	2501706	31427738	58927015	732	117708											
GPT2	84706	broad.mit.edu	37	chr16	46931703	46931703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggccctgggctgggcGggccgtcataggggccgtcc	20	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46931703	T	T	46931703	1	4	130	0	1	0	0	0	0	0	0	0	6804	1131	39	1		1	GPT2	16	46931703	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	15503965	46931703	43423050	733	117709											
PHKB	5257	broad.mit.edu	37	chr16	47622833	47622833	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatacagatgctgccctGctcccctgcatcagttatcc	7	15	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47622833	T	T	47622833	2	4	130	1	0	0	0	0	0	0	0	1	11940	1306	46	3		3	PHKB	16	47622833	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	691130	47622833	42731920	734	117710											
PHKB	5257	broad.mit.edu	37	chr16	47694796	47694796	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcagaagctcccagaatcaGaccatatgtctttttgtcct	7	11	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47694796	C	C	47694796	1	2	130	0	1	0	0	0	0	0	0	0	11940	957	33	4		4	PHKB	16	47694796	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	71963	47694796	42659957	735	117711											
SNX20	124460	broad.mit.edu	37	chr16	50711509	50711509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttcccggtggctcctggGgtgcctaggagctgtgtcat	17	10	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50711509	T	T	50711509	1	4	130	0	1	0	0	0	0	0	0	0	15006	1247	43	2		2	SNX20	16	50711509	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3016713	50711509	39643244	736	117712											
MMP2	4313	broad.mit.edu	37	chr16	55530930	55530930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcccggaaaagattgatgCggtatacgaggccccacagg	13	11	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55530930	T	T	55530930	3	4	130	1	0	0	0	0	1	0	0	0	9751	768	27	4	1610	4	MMP2	16	55530930	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	4819421	55530930	34823823	737	117713											
CES7	221223	broad.mit.edu	37	chr16	55893436	55893436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggtttgagggagtggcaGtatggacagccagaattctt	14	7	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55893436	T	T	55893436	1	4	130	0	1	0	0	0	0	0	0	0	3302	1044	36	3		3	CES7	16	55893436	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	362506	55893436	34461317	738	117714											
MT1M	4499	broad.mit.edu	37	chr16	56667403	56667403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgagtgcatccttctgGggaactgggctttctttgcc	12	12	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56667403	T	T	56667403	1	4	130	0	1	0	0	0	0	0	0	0	9997	1247	43	2		2	MT1M	16	56667403	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	773967	56667403	33687350	739	117715											
CES2	8824	broad.mit.edu	37	chr16	66969550	66969550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccgaccatgcggctgcaCagacttcgtgcgcggctgag	15	13	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66969550	A	A	66969550	3	1	130	1	0	0	0	0	1	0	0	0	3300	477	17	3	206	3	CES2	16	66969550	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	10302147	66969550	23385203	740	117716											
CES3	23491	broad.mit.edu	37	chr16	67006842	67006842	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaacccagtgccacgggccGgacagaagttcagggaggcc	14	13	2	1	rs149091298		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67006842	C	C	67006842	3	2	130	1	0	0	0	0	1	0	0	0	3301	1117	39	4	1656	4	CES3	16	67006842	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	37292	67006842	23347911	741	117717											
SF3B3	23450	broad.mit.edu	37	chr16	70589199	70589199	+	Intron	DEL	G	-	-													agtcatttagatgatagtatGgtgaaatcctgtctctacta							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70589199	-	-	70589199	6	5	130	0	1	1	0	1	0	0	0	0	14265	1363	47	0		0	SF3B3	16	70589199	Intron	DEL	G	TCGA-44-6778-01A-11D-1855-08	3582357	70589199	19765554	742	117718											
CALB2	794	broad.mit.edu	37	chr16	71406162	71406162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgtctccgattgtgtgGgattttcctgacctatgcct	10	12	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71406162	T	T	71406162	1	4	130	0	1	0	0	0	0	0	0	0	2600	1247	43	2		2	CALB2	16	71406162	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	816963	71406162	18948591	743	117719											
PHLPP2	23035	broad.mit.edu	37	chr16	71713315	71713315	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagattgccaatttgactTggtaggtcatgaaatccatt	9	7	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71713315	G	G	71713315	2	3	130	1	0	0	0	0	0	0	0	1	11950	1799	63	5		5	PHLPP2	16	71713315	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	307153	71713315	18641438	744	117720											
DHX38	9785	broad.mit.edu	37	chr16	72135088	72135089	+	Frame_Shift_Del	DEL	AG	-	-													cagggagcagaaggagcgcaAgaaggttggtttcttggttt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72135089	-	-	72135088	7	5	130	1	0	1	0	1	0	0	0	0	4551	72	3	0	1416	0	DHX38	16	72135088	Frame_Shift_Del	DEL	AG	TCGA-44-6778-01A-11D-1855-08	421773	72135088	18219665	745	117721											
ZFHX3	463	broad.mit.edu	37	chr16	72829024	72829024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaggtaggtttgcgagCtgttgaggagttgatgtgtg	19	2	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72829024	A	A	72829024	3	1	130	1	0	0	0	0	1	0	0	0	17760	796	28	3	3562	3	ZFHX3	16	72829024	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	693936	72829024	17525729	746	117722											
ADAMTS18	170692	broad.mit.edu	37	chr16	77317919	77317919	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggttgcagacaccatgCtgaggaactaggtgacacca	12	9	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77317919	T	T	77317919	2	4	130	1	0	0	0	0	0	0	0	1	263	796	28	4		4	ADAMTS18	16	77317919	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	4488895	77317919	13036834	747	117723											
PKD1L2	114780	broad.mit.edu	37	chr16	81171057	81171057	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attacctgggcccaacagatGtcctggcagcggggccacag	13	13	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81171057	A	A	81171057	3	1	130	1	0	0	0	0	1	0	0	0	12060	1377	48	4	1718	4	PKD1L2	16	81171057	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3853138	81171057	9183696	748	117724											
KIAA0513	9764	broad.mit.edu	37	chr16	85106428	85106428	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacatcctgggcccccatcCcagctgcatttggaaacact	8	15	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85106428	T	T	85106428	1	4	130	0	1	0	0	0	0	0	0	0	8251	638	22	4		4	KIAA0513	16	85106428	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	3935371	85106428	5248325	749	117725											
GALNS	2588	broad.mit.edu	37	chr16	88884552	88884552	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggggacagagagctctgGtcacacggctggggctgaca	17	10	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88884552	C	C	88884552	1	2	130	0	1	0	0	0	0	0	0	0	6268	1276	44	4		4	GALNS	16	88884552	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3778124	88884552	1470201	750	117726											
CDH15	1013	broad.mit.edu	37	chr16	89245761	89245761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacccacagctcccagCtgcacgctgccgcccagggc	9	21	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89245761	A	A	89245761	1	1	130	0	1	0	0	0	0	0	0	0	3130	812	28	3		3	CDH15	16	89245761	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	361209	89245761	1108992	751	117727											
CPNE7	27132	broad.mit.edu	37	chr16	89661869	89661869	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcctcacgcctgcccatgtCcatcatcatcgtgggcgtgg	11	15	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89661869	G	G	89661869	3	3	130	1	0	0	0	0	1	0	0	0	3849	855	30	4	1684	4	CPNE7	16	89661869	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	416108	89661869	692884	752	117728											
PRDM7	11105	broad.mit.edu	37	chr16	90142071	90142071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattttcctagctctctgCtgacacagagcagtcgctga	9	12	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90142071	A	A	90142071	1	1	130	0	1	0	0	0	0	0	0	0	12567	812	28	3		3	PRDM7	16	90142071	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	480202	90142071	212682	753	117729											
WDR81	124997	broad.mit.edu	37	chr17	1631425	1631425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggatggggagcctcctGcctcctcgggcctggggctc	15	15	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1631425	T	T	1631425	1	4	130	0	1	0	0	0	0	0	0	0	17457	1319	46	3		3	WDR81	17	1631425	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08		1631425	79563785	754	117730											
SRR	63826	broad.mit.edu	37	chr17	2210386	2210386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagatatttgttggtggCattaacgaagacactgaaga	11	4	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2210386	A	A	2210386	1	1	130	0	1	0	0	0	0	0	0	0	15284	725	25	3		3	SRR	17	2210386	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	578961	2210386	78984824	755	117731											
OR1A1	8383	broad.mit.edu	37	chr17	3119640	3119640	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttctccacctgtggttcCcacctcacggttgtctcttt	7	16	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3119640	A	A	3119640	2	1	130	1	0	0	0	0	0	0	0	1	11043	610	22	2		2	OR1A1	17	3119640	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	909254	3119640	78075570	756	117732											
SHPK	23729	broad.mit.edu	37	chr17	3514007	3514007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcgcactcccactgccCatcaccctctccacgcccca	5	23	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3514007	A	A	3514007	3	1	130	1	0	0	0	0	1	0	0	0	14403	594	21	2	156	2	SHPK	17	3514007	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	394367	3514007	77681203	757	117733											
WSCD1	23302	broad.mit.edu	37	chr17	6021527	6021527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaatcaaggaccttgcgGtgggggtgggaggcttgtca	18	6	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6021527	T	T	6021527	1	4	130	0	1	0	0	0	0	0	0	0	17533	1276	44	3		3	WSCD1	17	6021527	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2507520	6021527	75173683	758	117734											
SLC13A5	284111	broad.mit.edu	37	chr17	6606242	6606242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggcaggtccctccagcCccggtacccacttcgttgtc	12	16	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6606242	A	A	6606242	1	1	130	0	1	0	0	0	0	0	0	0	14508	638	22	2		2	SLC13A5	17	6606242	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	584715	6606242	74588968	759	117735											
DLG4	1742	broad.mit.edu	37	chr17	7111628	7111628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggctggccgccctggcCgccgcctcttcccccagcca	10	22	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7111628	A	A	7111628	1	1	130	0	1	0	0	0	0	0	0	0	4597	667	23	1		1	DLG4	17	7111628	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	505386	7111628	74083582	760	117736											
NEURL4	84461	broad.mit.edu	37	chr17	7230117	7230117	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccgccggcgctcagccgtCttattattgttgctgagttt	12	11	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7230117	T	T	7230117	2	4	130	1	0	0	0	0	0	0	0	1	10442	912	32	4		4	NEURL4	17	7230117	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	118489	7230117	73965093	761	117737											
SPEM1	374768	broad.mit.edu	37	chr17	7324683	7324683	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggggcggtgccagaggCagaggcggctcagtaccagc	20	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7324683	T	T	7324683	3	4	130	1	0	0	0	0	1	0	0	0	15155	710	25	4	699	4	SPEM1	17	7324683	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	94566	7324683	73870527	762	117738											
TP53	7157	broad.mit.edu	37	chr17	7577587	7577587	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacatgtagttgtagtggaTggtggtacagtcagagccaa	13	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577587	A	A	7577587	3	1	130	1	0	0	0	0	1	0	0	0	16505	1464	51	5	596	5	TP53	17	7577587	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	252904	7577587	73617623	763	117739											
DNAH2	146754	broad.mit.edu	37	chr17	7696322	7696322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatccaataacgtgcagagCatcattgagagcagggttga	11	8	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7696322	A	A	7696322	3	1	130	1	0	0	0	0	1	0	0	0	4642	709	25	3	7554	3	DNAH2	17	7696322	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	118735	7696322	73498888	764	117740											
WDR16	146845	broad.mit.edu	37	chr17	9497415	9497415	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaagtaacctgttgtgtTtttttctttctagaaccact	5	7	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9497415	C	C	9497415	1	2	130	0	1	0	0	0	0	0	0	0	17403	1856	64	5		5	WDR16	17	9497415	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1801093	9497415	71697795	765	117741											
GLP2R	9340	broad.mit.edu	37	chr17	9737166	9737166	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacgactcggaagtgggctCagtacaaacaggcatgtctg	12	9	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9737166	A	A	9737166	3	1	130	1	0	0	0	0	1	0	0	0	6517	827	29	3	238	3	GLP2R	17	9737166	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	239751	9737166	71458044	766	117742											
GAS7	8522	broad.mit.edu	37	chr17	9822886	9822886	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcccaccaacaaccaccaGgggctgctctgtgtcagcct	10	17	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9822886	A	A	9822886	1	1	130	0	1	0	0	0	0	0	0	0	6312	1015	35	4		4	GAS7	17	9822886	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	85720	9822886	71372324	767	117743											
MYH13	8735	broad.mit.edu	37	chr17	10214671	10214671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagagaatacagggcagcCgttcagatgaggtgttggca	16	6	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10214671	A	A	10214671	1	1	130	0	1	0	0	0	0	0	0	0	10126	667	23	1		1	MYH13	17	10214671	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	391785	10214671	70980539	768	117744											
MYH8	4626	broad.mit.edu	37	chr17	10299915	10299915	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcgtttcgagttgatccaGggattcctcatagacattct	9	9	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10299915	A	A	10299915	2	1	130	1	0	0	0	0	0	0	0	1	10135	991	35	4		4	MYH8	17	10299915	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	85244	10299915	70895295	769	117745											
MYH8	4626	broad.mit.edu	37	chr17	10303544	10303544	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccaaaaaaaaatcatcttAatcgatcataaccagcattt	2	10	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10303544	C	C	10303544	1	2	130	0	1	0	0	0	0	0	0	0	10135	377	13	5		5	MYH8	17	10303544	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	3629	10303544	70891666	770	117746											
MYH4	4622	broad.mit.edu	37	chr17	10356559	10356559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcatccagggtctgctgGtgggcctcctggagagcctt	15	11	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10356559	T	T	10356559	3	4	130	1	0	0	0	0	1	0	0	0	10131	1252	44	3	2866	3	MYH4	17	10356559	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	53015	10356559	70838651	771	117747											
MYH1	4619	broad.mit.edu	37	chr17	10400385	10400385	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgcaataaaatgcttaCctctgcctcctctaaggcag	7	11	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10400385	A	A	10400385	5	1	130	1	0	0	0	0	0	0	1	0	10123	521	18	3	1194	3	MYH1	17	10400385	Splice_Site	SNP	C	TCGA-44-6778-01A-11D-1855-08	43826	10400385	70794825	772	117748											
MYH1	4619	broad.mit.edu	37	chr17	10405998	10405998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataacgacacaaacttatGcttacttagtttgttacaaa	4	8	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10405998	T	T	10405998	1	4	130	0	1	0	0	0	0	0	0	0	10123	1334	46	3		3	MYH1	17	10405998	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	5613	10405998	70789212	773	117749											
MYH2	4620	broad.mit.edu	37	chr17	10430373	10430373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctggcgtgaaaactcaCctgatggacaaaagaaatgg	11	8	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10430373	A	A	10430373	3	1	130	1	0	0	0	0	1	0	0	0	10129	521	18	3	2001	3	MYH2	17	10430373	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	24375	10430373	70764837	774	117750											
LGALS9C	654346	broad.mit.edu	37	chr17	18394647	18394647	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatgttctctgtaagtcttCaagttctgatcagttcacag	8	8	6	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18394647	A	A	18394647	1	1	130	0	1	0	0	0	0	0	0	0	8822	841	29	3		3	LGALS9C	17	18394647	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	7964274	18394647	62800563	775	117751											
LGALS9B	284194	broad.mit.edu	37	chr17	20361676	20361676	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcgtttccactgaagccCgtctgaaagtccacagcaaa	8	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20361676	A	A	20361676	2	1	130	1	0	0	0	0	0	0	0	1	8821	639	23	1		1	LGALS9B	17	20361676	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	1967029	20361676	60833534	776	117752											
RAB34	83871	broad.mit.edu	37	chr17	27041710	27041710	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcagttaggtagaggttgCtgtcatcactgttgatgcct	13	7	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27041710	G	G	27041710	3	3	130	1	0	0	0	0	1	0	0	0	13032	797	28	4	116	4	RAB34	17	27041710	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	6680034	27041710	54153500	777	117753											
CRYBA1	1411	broad.mit.edu	37	chr17	27576293	27576293	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagcaggccccaggcctgTgctcgtccataaggcagtga	13	13	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27576293	A	A	27576293	1	1	130	0	1	0	0	0	0	0	0	0	3939	1711	59	5		5	CRYBA1	17	27576293	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	534583	27576293	53618917	778	117754											
TBC1D29	26083	broad.mit.edu	37	chr17	28889959	28889959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctccagtaccaggtccctTcctgagtcaccttctggggc	11	15	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28889959	C	C	28889959	1	2	130	0	1	0	0	0	0	0	0	0	15737	1798	62	5		5	TBC1D29	17	28889959	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1313666	28889959	52305251	779	117755											
C17orf102	400591	broad.mit.edu	37	chr17	32905798	32905798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatatcactccagccaccCctcccgctagtcagcaggtg	8	17	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32905798	T	T	32905798	1	4	130	0	1	0	0	0	0	0	0	0	1863	638	22	4		4	C17orf102	17	32905798	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4015839	32905798	48289412	780	117756											
TMEM132E	124842	broad.mit.edu	37	chr17	32956214	32956214	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgcaagccatcctgccCctggccatggtgagcaggca	13	13	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32956214	A	A	32956214	2	1	130	1	0	0	0	0	0	0	0	1	16171	610	22	2		2	TMEM132E	17	32956214	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	50416	32956214	48238996	781	117757											
RFFL	117584	broad.mit.edu	37	chr17	33348334	33348334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggcaggagaggaaaaTgaaaatgagccctcaaactg	11	7	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33348334	C	C	33348334	1	2	130	0	1	0	0	0	0	0	0	0	13358	1479	51	5		5	RFFL	17	33348334	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	392120	33348334	47846876	782	117758											
UNC45B	146862	broad.mit.edu	37	chr17	33491121	33491121	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatcctcatcaacaagctcTatgatgacctgcgctgtgac	7	13	3	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33491121	C	C	33491121	3	2	130	1	0	0	0	0	1	0	0	0	17115	1522	53	5	1117	5	UNC45B	17	33491121	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	142787	33491121	47704089	783	117759											
LASP1	3927	broad.mit.edu	37	chr17	37074822	37074822	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagacccaggtgagccggcAtgcagggccctaggctgacc	14	14	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37074822	T	T	37074822	1	4	130	0	1	0	0	0	0	0	0	0	8709	232	8	5		5	LASP1	17	37074822	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	3583701	37074822	44120388	784	117760											
FBXO47	494188	broad.mit.edu	37	chr17	37093351	37093351	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagtcccatggatgctAttttttgagtgaaaaagtag	9	4	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37093351	G	G	37093351	1	3	130	0	1	0	0	0	0	0	0	0	5813	464	16	5		5	FBXO47	17	37093351	3'UTR	SNP	A	TCGA-44-6778-01A-11D-1855-08	18529	37093351	44101859	785	117761											
CDK12	51755	broad.mit.edu	37	chr17	37627734	37627734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccacctcagacaccccCtttgccacctttgcctccaa	3	22	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37627734	A	A	37627734	3	1	130	1	0	0	0	0	1	0	0	0	3158	681	24	2	1655	2	CDK12	17	37627734	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	534383	37627734	43567476	786	117762											
KRT25	147183	broad.mit.edu	37	chr17	38905689	38905689	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactgtgtaacccagtatttGatttatagtgtttgctgatt	8	5	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38905689	A	A	38905689	1	1	130	0	1	0	0	0	0	0	0	0	8533	1305	45	4		4	KRT25	17	38905689	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1277955	38905689	42289521	787	117763											
DNAJC7	7266	broad.mit.edu	37	chr17	40152592	40152592	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtctctgcttccctgAaaatgaaagagaaagagaat	9	6	1	5			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40152592	T	T	40152592	1	4	130	0	1	0	0	0	0	0	0	0	4694	261	9	5		5	DNAJC7	17	40152592	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1246903	40152592	41042618	788	117764											
MEOX1	4222	broad.mit.edu	37	chr17	41738613	41738613	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgccgggcgtctgagacaGggaagtgccagttgggggac	19	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41738613	A	A	41738613	3	1	130	1	0	0	0	0	1	0	0	0	9566	1000	35	4	486	4	MEOX1	17	41738613	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1586021	41738613	39456597	789	117765											
EFTUD2	9343	broad.mit.edu	37	chr17	42953218	42953218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaacacacgcttagaaaTaaatcacagttgttcccaga	5	11	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42953218	C	C	42953218	1	2	130	0	1	0	0	0	0	0	0	0	5001	1421	49	5		5	EFTUD2	17	42953218	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1214605	42953218	38241992	790	117766											
C17orf57	124989	broad.mit.edu	37	chr17	45502609	45502609	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactgtatgaccttgatgtAaatatatttgatgagataat	7	4	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45502609	G	G	45502609	1	3	130	0	1	0	0	0	0	0	0	0	1881	377	13	5		5	C17orf57	17	45502609	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	2549391	45502609	35692601	791	117767											
COL1A1	1277	broad.mit.edu	37	chr17	48267222	48267222	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgggtgatactcacagGgggaccagcgctgccgcgag	18	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48267222	A	A	48267222	3	1	130	1	0	0	0	0	1	0	0	0	3709	1232	43	4	1843	4	COL1A1	17	48267222	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2764613	48267222	32927988	792	117768											
CUEDC1	404093	broad.mit.edu	37	chr17	55962798	55962798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggttgaactccaggcggCgcacctggcgggcaggccgg	17	14	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55962798	A	A	55962798	3	1	130	1	0	0	0	0	1	0	0	0	4085	768	27	3	1068	3	CUEDC1	17	55962798	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	7695576	55962798	25232412	793	117769											
TBX2	6909	broad.mit.edu	37	chr17	59485334	59485334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaacagaagggcacggtGtccaggggatagcacccagc	13	11	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59485334	T	T	59485334	1	4	130	0	1	0	0	0	0	0	0	0	15777	1392	48	3		3	TBX2	17	59485334	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3522536	59485334	21709876	794	117770											
MED13	9969	broad.mit.edu	37	chr17	60088407	60088407	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtctttggctggctgaatCtgcgtccatgccaacatcat	9	11	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60088407	A	A	60088407	3	1	130	1	0	0	0	0	1	0	0	0	9523	913	32	3	5141	3	MED13	17	60088407	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	603073	60088407	21106803	795	117771											
CSHL1	1444	broad.mit.edu	37	chr17	61988470	61988470	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccccaaacctgaggttagTgcccccgtcccatctgcagg	10	16	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61988470	A	A	61988470	1	1	130	0	1	0	0	0	0	0	0	0	3976	1711	59	5		5	CSHL1	17	61988470	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1900063	61988470	19206740	796	117772											
SCN4A	6329	broad.mit.edu	37	chr17	62018120	62018120	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagactcagtgggccaccccGatgctgcctgctagacaaga	12	13	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62018120	T	T	62018120	1	4	130	0	1	0	0	0	0	0	0	0	14033	1073	37	3		3	SCN4A	17	62018120	3'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	29650	62018120	19177090	797	117773											
ABCA9	10350	broad.mit.edu	37	chr17	66978850	66978850	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accccgatgggtacaagtctAaaaagggaaacaaggctagg	12	8	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66978850	G	G	66978850	1	3	130	0	1	0	0	0	0	0	0	0	39	377	13	5		5	ABCA9	17	66978850	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	4960730	66978850	14216360	798	117774											
SDK2	54549	broad.mit.edu	37	chr17	71426691	71426691	+	Frame_Shift_Del	DEL	G	-	-													tgggtcactccgcacaccatGgaggcctgggtgcccttgat							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71426691	-	-	71426691	7	5	130	1	0	1	0	1	0	0	0	0	14082	1335	47	0	5112	0	SDK2	17	71426691	Frame_Shift_Del	DEL	G	TCGA-44-6778-01A-11D-1855-08	4447841	71426691	9768519	799	117775											
SLC16A5	9121	broad.mit.edu	37	chr17	73096184	73096184	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgggtgctggccaacgcGctggcctcgatgggcgtctc	17	14	1	0	rs114487026	by1000genomes	TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73096184	T	T	73096184	2	4	130	1	0	0	0	0	0	0	0	1	14524	1074	38	3		3	SLC16A5	17	73096184	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1669493	73096184	8099026	800	117776											
H3F3B	3021	broad.mit.edu	37	chr17	73774911	73774911	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagcgcaccgatggctgCgctctgaaacctcaggtcgg	13	14	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73774911	T	T	73774911	3	4	130	1	0	0	0	0	1	0	0	0	7000	768	27	4	156	4	H3F3B	17	73774911	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	678727	73774911	7420299	801	117777											
MGAT5B	146664	broad.mit.edu	37	chr17	74900403	74900403	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacggcaccgagtgctccTtcctcatctacctcagtgag	10	14	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74900403	C	C	74900403	3	2	130	1	0	0	0	0	1	0	0	0	9642	1609	56	5	712	5	MGAT5B	17	74900403	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1125492	74900403	6294807	802	117778											
AFMID	125061	broad.mit.edu	37	chr17	76203015	76203015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgaaaacaatcttccaGtagttctgacgatacttgga	7	8	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76203015	T	T	76203015	3	4	130	1	0	0	0	0	1	0	0	0	362	1020	36	3	966	3	AFMID	17	76203015	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1302612	76203015	4992195	803	117779											
BAHCC1	57597	broad.mit.edu	37	chr17	79425854	79425854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagggcaagggccgggccGtgagccgcctgctggaaagc	17	14	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79425854	T	T	79425854	3	4	130	1	0	0	0	0	1	0	0	0	1301	1145	40	3	5373	3	BAHCC1	17	79425854	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3222839	79425854	1769356	804	117780											
LAMA1	284217	broad.mit.edu	37	chr18	6997910	6997910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaaatttttaaaaaggagAgttaaagttaatgcgatgtg	10	2	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6997910	T	T	6997910	1	4	130	0	1	0	0	0	0	0	0	0	8677	319	11	5		5	LAMA1	18	6997910	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08		6997910	71079338	805	117781											
CEP192	55125	broad.mit.edu	37	chr18	13068240	13068240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagttatgatggacaggtgGgagagaactggcttagaatt	14	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13068240	T	T	13068240	1	4	130	0	1	0	0	0	0	0	0	0	3281	1247	43	2		2	CEP192	18	13068240	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	6070330	13068240	65009008	806	117782											
CTAGE1	64693	broad.mit.edu	37	chr18	19995630	19995630	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttctcattgcaaatggAgcacgtggtggacctgggac	12	9	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19995630	T	T	19995630	2	4	130	1	0	0	0	0	0	0	0	1	4026	291	11	5		5	CTAGE1	18	19995630	Silent	SNP	A	TCGA-44-6778-01A-11D-1855-08	6927390	19995630	58081618	807	117783											
CTAGE1	64693	broad.mit.edu	37	chr18	19996301	19996301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaaggccaacccaatgGtgagggaccatatggggaat	14	7	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19996301	T	T	19996301	3	4	130	1	0	0	0	0	1	0	0	0	4026	1261	44	3	767	3	CTAGE1	18	19996301	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	671	19996301	58080947	808	117784											
PSMA8	143471	broad.mit.edu	37	chr18	23713962	23713962	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgacagggcgatcactgtCttctccccagacggacacct	9	14	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23713962	A	A	23713962	2	1	130	1	0	0	0	0	0	0	0	1	12779	900	32	3		3	PSMA8	18	23713962	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	3717661	23713962	54363286	809	117785											
DSC3	1825	broad.mit.edu	37	chr18	28574440	28574440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttatgtttaatttttaaCcagtgtgtcctctaatggat	6	6	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28574440	A	A	28574440	1	1	130	0	1	0	0	0	0	0	0	0	4807	507	18	3		3	DSC3	18	28574440	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	4860478	28574440	49502808	810	117786											
DSG3	1830	broad.mit.edu	37	chr18	29038923	29038923	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtccatgccaacagaggcCttatttatacaagttttaat	6	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29038923	T	T	29038923	1	4	130	0	1	0	0	0	0	0	0	0	4818	696	24	4		4	DSG3	18	29038923	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	464483	29038923	49038325	811	117787											
SLC39A6	25800	broad.mit.edu	37	chr18	33706670	33706670	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctgagtgatgctcgtggtCtgagtgatggtcgtggtcat	16	6	3	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33706670	A	A	33706670	3	1	130	1	0	0	0	0	1	0	0	0	14736	913	32	3	2014	3	SLC39A6	18	33706670	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	4667747	33706670	44370578	812	117788											
SLC14A2	8170	broad.mit.edu	37	chr18	43204691	43204691	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccagcagatacaaactctAcgaggcagagtttaccagcc	8	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43204691	T	T	43204691	3	4	130	1	0	0	0	0	1	0	0	0	14510	391	14	5	64	5	SLC14A2	18	43204691	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	9498021	43204691	34872557	813	117789											
SLC14A1	6563	broad.mit.edu	37	chr18	43319051	43319051	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaatctaaaattacattGtaggagtttgtgggtgtcct	10	6	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43319051	T	T	43319051	1	4	130	0	1	0	0	0	0	0	0	0	14509	1392	48	3		3	SLC14A1	18	43319051	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	114360	43319051	34758197	814	117790											
KIAA1632	57724	broad.mit.edu	37	chr18	43447439	43447439	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcacactgataggggcacTggaaaaacaaatgaaaaact	9	7	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43447439	G	G	43447439	1	3	130	0	1	0	0	0	0	0	0	0	8319	1595	55	5		5	KIAA1632	18	43447439	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	128388	43447439	34629809	815	117791											
ST8SIA5	29906	broad.mit.edu	37	chr18	44284489	44284489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacccccaacccctgccCcacctccacatgctccctgc	3	25	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44284489	A	A	44284489	1	1	130	0	1	0	0	0	0	0	0	0	15353	638	22	2		2	ST8SIA5	18	44284489	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	837050	44284489	33792759	816	117792											
TCEB3C	162699	broad.mit.edu	37	chr18	44555055	44555056	+	Missense_Mutation	DNP	GA	CT	CT													ccataattcatctgtctctcGagcgagtgcggcattgtctt							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	44555056	CT	CT	44555055	3	2	130	1	0	0	0	0	1	0	0	0	15805	1066	37	4	2128	4	TCEB3C	18	44555055	Missense_Mutation	DNP	GA	TCGA-44-6778-01A-11D-1855-08	270566	44555055	33522193	817	117793											
SERPINB2	5055	broad.mit.edu	37	chr18	61562469	61562469	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaatccgtgggcaagtGtaaccgttttctctaattct	8	9	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61562469	C	C	61562469	1	2	130	0	1	0	0	0	0	0	0	0	14214	1392	48	4		4	SERPINB2	18	61562469	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	17007414	61562469	16514779	818	117794											
CCDC102B	79839	broad.mit.edu	37	chr18	66504561	66504561	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgagtctatcagagagtaTttggtaaaaagacaattttc	8	5	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66504561	C	C	66504561	2	2	130	1	0	0	0	0	0	0	0	1	2763	1500	52	5		5	CCDC102B	18	66504561	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	4942092	66504561	11572687	819	117795											
CD226	10666	broad.mit.edu	37	chr18	67563048	67563049	+	Missense_Mutation	DNP	CG	TT	TT													gacatcggggatgacgatgaCgctccaccttccgtggctgc					rs148019790		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	67563049	TT	TT	67563048	3	4	130	1	0	0	0	0	1	0	0	0	3016	536	19	4	410	4	CD226	18	67563048	Missense_Mutation	DNP	CG	TCGA-44-6778-01A-11D-1855-08	1058487	67563048	10514200	820	117796											
RTTN	25914	broad.mit.edu	37	chr18	67754008	67754008	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcatctctgaaataacCaatatattgtaattaatagc	6	6	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67754008	G	G	67754008	1	3	130	0	1	0	0	0	0	0	0	0	13848	609	21	4		4	RTTN	18	67754008	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	190960	67754008	10323240	821	117797											
NETO1	81832	broad.mit.edu	37	chr18	70450862	70450862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaacagcttatgaaactgGcatcatatggcatatacgaa	7	7	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70450862	T	T	70450862	1	4	130	0	1	0	0	0	0	0	0	0	10434	1218	42	3		3	NETO1	18	70450862	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2696854	70450862	7626386	822	117798											
TSHZ1	10194	broad.mit.edu	37	chr18	72999000	72999000	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctggacgacagccccaaGggagggctggacattctcaa	13	12	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72999000	T	T	72999000	3	4	130	1	0	0	0	0	1	0	0	0	16748	991	35	2	1505	2	TSHZ1	18	72999000	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	2548138	72999000	5078248	823	117799											
C18orf22	79863	broad.mit.edu	37	chr18	77805852	77805852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggatcgatcatgaggcGctcaacaagcagattatgga	13	7	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77805852	T	T	77805852	2	4	130	1	0	0	0	0	0	0	0	1	1916	1087	38	3		3	C18orf22	18	77805852	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	4806852	77805852	271396	824	117800											
RPS15	6209	broad.mit.edu	37	chr19	1440274	1440274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgcggccgtccctgccGgctggggtgggctggggtcg	21	11	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1440274	T	T	1440274	1	4	130	0	1	0	0	0	0	0	0	0	13736	1131	39	1		1	RPS15	19	1440274	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08		1440274	57688709	825	117801											
ZNF554	115196	broad.mit.edu	37	chr19	2823002	2823002	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggatctggggactggcctgGatctggtattcgcagcgcct	16	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2823002	T	T	2823002	1	4	130	0	1	0	0	0	0	0	0	0	18112	1189	41	3		3	ZNF554	19	2823002	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1382728	2823002	56305981	826	117802											
ZNF554	115196	broad.mit.edu	37	chr19	2834217	2834217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccctttgagtgccaccaGtgtgggaaggtgttcaaccg	12	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2834217	T	T	2834217	3	4	130	1	0	0	0	0	1	0	0	0	18112	1020	36	3	1002	3	ZNF554	19	2834217	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	11215	2834217	56294766	827	117803											
PIP5K1C	23396	broad.mit.edu	37	chr19	3646197	3646197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtccatggcgccatggcTtcctgggaggggctcacgga	17	11	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3646197	C	C	3646197	1	2	130	0	1	0	0	0	0	0	0	0	12036	1624	56	5		5	PIP5K1C	19	3646197	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	811980	3646197	55482786	828	117804											
LONP1	9361	broad.mit.edu	37	chr19	5711731	5711731	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccgcaggaacggctcaaggGagcccgtgggggaggcagct	19	11	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5711731	T	T	5711731	1	4	130	0	1	0	0	0	0	0	0	0	8979	1189	41	3		3	LONP1	19	5711731	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2065534	5711731	53417252	829	117805											
OR7E24	26648	broad.mit.edu	37	chr19	9361944	9361944	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgactcccacctccacacCcccatgtacttcttcctctc	2	21	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9361944	A	A	9361944	2	1	130	1	0	0	0	0	0	0	0	1	11315	610	22	2		2	OR7E24	19	9361944	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	3650213	9361944	49767039	830	117806											
KEAP1	9817	broad.mit.edu	37	chr19	10610382	10610382	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagcccgttggtgaacaTggccttgaagacagggctgg	15	11	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10610382	C	C	10610382	3	2	130	1	0	0	0	0	1	0	0	0	8211	1464	51	5	1566	5	KEAP1	19	10610382	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1248438	10610382	48518601	831	117807											
AP1M2	10053	broad.mit.edu	37	chr19	10692296	10692296	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtctccagcttgttgctcTgctgagtgatgtacctggag	12	11	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10692296	C	C	10692296	3	2	130	1	0	0	0	0	1	0	0	0	737	1580	55	5	890	5	AP1M2	19	10692296	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	81914	10692296	48436687	832	117808											
CYP4F3	4051	broad.mit.edu	37	chr19	15752358	15752358	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctataccttctatgacaacTgctgccgcctccggtgtttc	7	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15752358	A	A	15752358	3	1	130	1	0	0	0	0	1	0	0	0	4223	1580	55	5	135	5	CYP4F3	19	15752358	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	5060062	15752358	43376625	833	117809											
AP1M1	8907	broad.mit.edu	37	chr19	16339013	16339013	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacagccgcatcgagtacatGatcaaggtgcgtgggccgag	14	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16339013	C	C	16339013	3	2	130	1	0	0	0	0	1	0	0	0	736	1290	45	4	952	4	AP1M1	19	16339013	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	586655	16339013	42789970	834	117810											
HAPLN4	404037	broad.mit.edu	37	chr19	19369598	19369598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgtcctgctcggcgcacGcgcgctgcgcctccgcgaag	14	18	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19369598	T	T	19369598	3	4	130	1	0	0	0	0	1	0	0	0	7023	1087	38	3	665	3	HAPLN4	19	19369598	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3030585	19369598	39759385	835	117811											
HAPLN4	404037	broad.mit.edu	37	chr19	19371853	19371853	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccaccacctttgtccactTgagccggacgccgtcgtgac	10	16	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19371853	A	A	19371853	4	1	130	1	0	0	0	0	0	1	0	0	7023	1821	63	5	967	5	HAPLN4	19	19371853	Nonsense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	2255	19371853	39757130	836	117812											
TM6SF2	53345	broad.mit.edu	37	chr19	19375400	19375400	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctgtctctaaaacacCcaacccccgcttccccaggt	4	21	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19375400	G	G	19375400	1	3	130	0	1	0	0	0	0	0	0	0	16096	638	22	4		4	TM6SF2	19	19375400	3'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	3547	19375400	39753583	837	117813											
ZNF90	7643	broad.mit.edu	37	chr19	20191165	20191165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccacaggagaaattccccCgtccagcctcagggcaccgt	10	16	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20191165	A	A	20191165	1	1	130	0	1	0	0	0	0	0	0	0	18328	667	23	1		1	ZNF90	19	20191165	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	815765	20191165	38937818	838	117814											
ZNF681	148213	broad.mit.edu	37	chr19	23927160	23927160	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttaaaagctttgccacattCttcacatttgtagggtttct	7	8	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23927160	T	T	23927160	3	4	130	1	0	0	0	0	1	0	0	0	18215	922	32	4	749	4	ZNF681	19	23927160	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	3735995	23927160	35201823	839	117815											
ZNF681	148213	broad.mit.edu	37	chr19	23941408	23941408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctggctgtcagcgcagcCgccatcttatggtccaagtg	14	12	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23941408	A	A	23941408	1	1	130	0	1	0	0	0	0	0	0	0	18215	667	23	1		1	ZNF681	19	23941408	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	14248	23941408	35187575	840	117816											
ZNF536	9745	broad.mit.edu	37	chr19	31039383	31039383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatgaaagtccacggagtgGatggtggtgaggagaaaccc	15	8	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039383	T	T	31039383	3	4	130	1	0	0	0	0	1	0	0	0	18101	1174	41	3	2867	3	ZNF536	19	31039383	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	7097975	31039383	28089600	841	117817											
GPATCH1	55094	broad.mit.edu	37	chr19	33602647	33602647	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagatgctctggaacgctgtCtggaccccagcatgacagag	12	12	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33602647	T	T	33602647	2	4	130	1	0	0	0	0	0	0	0	1	6655	912	32	4		4	GPATCH1	19	33602647	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	2563264	33602647	25526336	842	117818											
HAMP	57817	broad.mit.edu	37	chr19	35775624	35775624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttggagaggagcaggttGccgggagccagtctcagagg	17	9	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35775624	T	T	35775624	1	4	130	0	1	0	0	0	0	0	0	0	7014	1334	46	3		3	HAMP	19	35775624	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2172977	35775624	23353359	843	117819											
MAG	4099	broad.mit.edu	37	chr19	35790540	35790540	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtgccggacaactgcccaGagctgcgccctgagctgagc	14	14	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35790540	T	T	35790540	4	4	130	1	0	0	0	0	0	1	0	0	9250	943	33	3	509	3	MAG	19	35790540	Nonsense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	14916	35790540	23338443	844	117820											
FFAR3	2865	broad.mit.edu	37	chr19	35850707	35850707	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccagtggcagcaggagagCagcatggagctgaaggagca	18	8	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35850707	G	G	35850707	3	3	130	1	0	0	0	0	1	0	0	0	5886	709	25	4	917	4	FFAR3	19	35850707	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	60167	35850707	23278276	845	117821											
RYR1	6261	broad.mit.edu	37	chr19	38931504	38931504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccactagcaacgcgcaGgtctgtgcaggagggagagg	17	10	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38931504	T	T	38931504	3	4	130	1	0	0	0	0	1	0	0	0	13879	1014	35	2	171	2	RYR1	19	38931504	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3080797	38931504	20197479	846	117822											
RYR1	6261	broad.mit.edu	37	chr19	38937347	38937347	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccccagacttgtctactatGaggggggagctgtgtgcact	13	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38937347	A	A	38937347	3	1	130	1	0	0	0	0	1	0	0	0	13879	1291	45	4	773	4	RYR1	19	38937347	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	5843	38937347	20191636	847	117823											
RYR1	6261	broad.mit.edu	37	chr19	39052106	39052106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccccaggtcagggaaccCgcgcgcgtgcaagctcgcct	13	16	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39052106	A	A	39052106	1	1	130	0	1	0	0	0	0	0	0	0	13879	667	23	1		1	RYR1	19	39052106	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	114759	39052106	20076877	848	117824											
PAPL	390928	broad.mit.edu	37	chr19	39589042	39589042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcactttttctgcatatcCctcccaccctgcccaggctt	4	19	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39589042	A	A	39589042	1	1	130	0	1	0	0	0	0	0	0	0	11521	638	22	2		2	PAPL	19	39589042	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	536936	39589042	19539941	849	117825											
SHKBP1	92799	broad.mit.edu	37	chr19	41088241	41088241	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggttccagctgagcccTttttgcccactgcaggggtc	13	13	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41088241	C	C	41088241	1	2	130	0	1	0	0	0	0	0	0	0	14397	1624	56	5		5	SHKBP1	19	41088241	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1499199	41088241	18040742	850	117826											
CYP2A7	1549	broad.mit.edu	37	chr19	41442196	41442196	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcactgggagggggcaGgtgggggtgcatcagggaag	23	5	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41442196	T	T	41442196	1	4	130	0	1	0	0	0	0	0	0	0	4196	1015	35	2		2	CYP2A7	19	41442196	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	353955	41442196	17686787	851	117827											
PSG1	5669	broad.mit.edu	37	chr19	43348410	43348410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatttgcttgtgcccatGggacacaggctgggaataaa	14	7	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43348410	T	T	43348410	1	4	130	0	1	0	0	0	0	0	0	0	12759	1363	47	2		2	PSG1	19	43348410	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1906214	43348410	15780573	852	117828											
PSG6	5675	broad.mit.edu	37	chr19	43520299	43520299	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccacctctcagcccacccGagtccttgaaagccaatagc	6	18	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520299	T	T	43520299	1	4	130	0	1	0	0	0	0	0	0	0	12765	1073	37	3		3	PSG6	19	43520299	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	171889	43520299	15608684	853	117829											
PSG6	5675	broad.mit.edu	37	chr19	43570570	43570570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtttagtggaggaaggaGgagatgcagtcccagataca	16	5	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43570570	T	T	43570570	1	4	130	0	1	0	0	0	0	0	0	0	12765	1015	35	2		2	PSG6	19	43570570	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	50271	43570570	15558413	854	117830											
ZNF221	7638	broad.mit.edu	37	chr19	44469355	44469355	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatattacctacaatgggttGgaattaagcatgtcactgtg	10	6	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44469355	C	C	44469355	1	2	130	0	1	0	0	0	0	0	0	0	17901	1363	47	4		4	ZNF221	19	44469355	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	898785	44469355	14659628	855	117831											
IGFL1	374918	broad.mit.edu	37	chr19	46733631	46733631	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttgctatgatgatgccgtCgtgcccttggccaggaccca	12	12	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46733631	T	T	46733631	2	4	130	1	0	0	0	0	0	0	0	1	7656	871	31	4		4	IGFL1	19	46733631	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	2264276	46733631	12395352	856	117832											
PNMAL1	55228	broad.mit.edu	37	chr19	46973123	46973123	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcttgagcctggccctttCtttggcatcaccggcttctt	8	14	4	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46973123	T	T	46973123	2	4	130	1	0	0	0	0	0	0	0	1	12252	912	32	4		4	PNMAL1	19	46973123	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	239492	46973123	12155860	857	117833											
DHX34	9704	broad.mit.edu	37	chr19	47856580	47856580	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgctggccgacctacctcGcacttacgacccacgttacc	8	18	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47856580	A	A	47856580	3	1	130	1	0	0	0	0	1	0	0	0	4547	1087	38	4	295	4	DHX34	19	47856580	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	883457	47856580	11272403	858	117834											
SLC8A2	6543	broad.mit.edu	37	chr19	47935571	47935571	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaccaaagcaggcccagcCgtggcagtactcggtggggg	16	12	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47935571	T	T	47935571	3	4	130	1	0	0	0	0	1	0	0	0	14821	652	23	4	531	4	SLC8A2	19	47935571	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	78991	47935571	11193412	859	117835											
GRWD1	83743	broad.mit.edu	37	chr19	48949791	48949791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttttccaggaccaggagGctcagtttccagccccttcc	10	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48949791	T	T	48949791	1	4	130	0	1	0	0	0	0	0	0	0	6877	1218	42	3		3	GRWD1	19	48949791	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1014220	48949791	10179192	860	117836											
CA11	770	broad.mit.edu	37	chr19	49147768	49147768	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacatccacggggctctgCcgcttccccacagcacacag	8	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49147768	T	T	49147768	2	4	130	1	0	0	0	0	0	0	0	1	2538	726	26	4		4	CA11	19	49147768	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	197977	49147768	9981215	861	117837											
CGB2	114336	broad.mit.edu	37	chr19	49535356	49535356	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgctaagagagagacatgTcaaaggtagggtagatcgac	13	8	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49535356	C	C	49535356	3	2	130	1	0	0	0	0	1	0	0	0	3328	1667	58	5	6	5	CGB2	19	49535356	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	387588	49535356	9593627	862	117838											
CGB	1082	broad.mit.edu	37	chr19	49548727	49548727	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtaattgtcggaggctgTggtgggtggatcagctgagg	18	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49548727	C	C	49548727	1	2	130	0	1	0	0	0	0	0	0	0	3326	1711	59	5		5	CGB	19	49548727	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	13371	49548727	9580256	863	117839											
KCNA7	3743	broad.mit.edu	37	chr19	49573357	49573357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtttccctgggggtgccCagagtggaggtggtagctca	18	8	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49573357	A	A	49573357	3	1	130	1	0	0	0	0	1	0	0	0	8078	595	21	2	40	2	KCNA7	19	49573357	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	24630	49573357	9555626	864	117840											
NUP62	23636	broad.mit.edu	37	chr19	50412101	50412101	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggcggagctggcagccgCccctgcagctgcgccagggc	16	16	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50412101	T	T	50412101	3	4	130	1	0	0	0	0	1	0	0	0	10863	739	26	4	608	4	NUP62	19	50412101	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	838744	50412101	8716882	865	117841											
SIGLEC6	946	broad.mit.edu	37	chr19	52034327	52034327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacatgcttaattgtacccGcctcccaagacggggctccc	8	16	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52034327	A	A	52034327	1	1	130	0	1	0	0	0	0	0	0	0	14425	1102	38	4		4	SIGLEC6	19	52034327	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1622226	52034327	7094656	866	117842											
SIGLEC5	8778	broad.mit.edu	37	chr19	52130747	52130747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagagccgctctgggacCcatagatgttccaggccttg	13	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52130747	A	A	52130747	3	1	130	1	0	0	0	0	1	0	0	0	14424	623	22	2	421	2	SIGLEC5	19	52130747	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	96420	52130747	6998236	867	117843											
ZNF845	91664	broad.mit.edu	37	chr19	53855173	53855173	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccttataagtgtaatgaTtgtggcaagaccttcagtca	8	7	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53855173	G	G	53855173	3	3	130	1	0	0	0	0	1	0	0	0	18320	1490	52	5	1255	5	ZNF845	19	53855173	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1724426	53855173	5273810	868	117844											
LILRB5	10990	broad.mit.edu	37	chr19	54760090	54760090	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggggagcttctgttcttcCtcaacaagaacaaacgtgag	10	10	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54760090	T	T	54760090	2	4	130	1	0	0	0	0	0	0	0	1	8866	680	24	4		4	LILRB5	19	54760090	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	904917	54760090	4368893	869	117845											
LILRA3	11026	broad.mit.edu	37	chr19	54802512	54802512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtccagggggtcgctgGgggccgaccactcggaggag	20	10	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54802512	T	T	54802512	3	4	130	1	0	0	0	0	1	0	0	0	8858	1232	43	2	402	2	LILRA3	19	54802512	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	42422	54802512	4326471	870	117846											
LILRA1	11024	broad.mit.edu	37	chr19	55107721	55107721	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggcctcaggagagaacgtGaccctgctgtgtcagtcatg	14	10	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55107721	T	T	55107721	2	4	130	1	0	0	0	0	0	0	0	1	8856	1277	45	3		3	LILRA1	19	55107721	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	305209	55107721	4021262	871	117847											
KIR3DL1	3811	broad.mit.edu	37	chr19	55348941	55348941	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaagcagagagacagaCaccagcgaagggaaggctca	15	8	1	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55348941	T	T	55348941	1	4	130	0	1	0	0	0	0	0	0	0	8391	493	17	4		4	KIR3DL1	19	55348941	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	241220	55348941	3780042	872	117848											
KIR3DL1	3811	broad.mit.edu	37	chr19	55377919	55377919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacggatacagtcttatcCctaatagtcctgaaaaatgt	6	10	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55377919	A	A	55377919	1	1	130	0	1	0	0	0	0	0	0	0	8391	638	22	2		2	KIR3DL1	19	55377919	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	28978	55377919	3751064	873	117849											
NLRP7	199713	broad.mit.edu	37	chr19	55445881	55445881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctgcaggaagtgttttGggcgtgtcatggtcttgtac	13	7	3	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55445881	T	T	55445881	3	4	130	1	0	0	0	0	1	0	0	0	10577	1348	47	2	686	2	NLRP7	19	55445881	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	67962	55445881	3683102	874	117850											
NLRP2	55655	broad.mit.edu	37	chr19	55485750	55485750	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcattttgaactggaaGgagataagagaaaggaacaa	12	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55485750	C	C	55485750	1	2	130	0	1	0	0	0	0	0	0	0	10572	1015	35	4		4	NLRP2	19	55485750	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	39869	55485750	3643233	875	117851											
BRSK1	84446	broad.mit.edu	37	chr19	55815000	55815000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacacagctgggtgaaacCatctcttgattgggttgaaa	11	7	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55815000	A	A	55815000	1	1	130	0	1	0	0	0	0	0	0	0	1532	609	21	2		2	BRSK1	19	55815000	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	329250	55815000	3313983	876	117852											
PEG3	5178	broad.mit.edu	37	chr19	57325950	57325950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgacgaaagattctccaCagactgcacattcaaagagt	9	9	2	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57325950	A	A	57325950	3	1	130	1	0	0	0	0	1	0	0	0	11814	478	17	3	910	3	PEG3	19	57325950	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	1510950	57325950	1803033	877	117853											
PEG3	5178	broad.mit.edu	37	chr19	57328654	57328654	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctttctttcaagaactcTctttctggaaacaagggttg	7	10	5	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57328654	C	C	57328654	3	2	130	1	0	0	0	0	1	0	0	0	11814	1559	54	5	3614	5	PEG3	19	57328654	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	2704	57328654	1800329	878	117854											
PEG3	5178	broad.mit.edu	37	chr19	57329084	57329084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatctcactggttgtgtgGctcctctgtgggatgtgcct	13	10	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57329084	T	T	57329084	1	4	130	0	1	0	0	0	0	0	0	0	11814	1218	42	3		3	PEG3	19	57329084	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	430	57329084	1799899	879	117855											
ZNF772	400720	broad.mit.edu	37	chr19	57985284	57985284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaagtgagtctttgcgGctgaaggttttcccacattc	10	9	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57985284	T	T	57985284	3	4	130	1	0	0	0	0	1	0	0	0	18274	1194	42	3	645	3	ZNF772	19	57985284	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	656200	57985284	1143699	880	117856											
A1BG	1	broad.mit.edu	37	chr19	58864777	58864777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaggcctcaccccacagCaagagaaagaccacgagcat	10	14	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58864777	A	A	58864777	3	1	130	1	0	0	0	0	1	0	0	0	1	709	25	3	1492	3	A1BG	19	58864777	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	879493	58864777	264206	881	117857											
ZNF132	7691	broad.mit.edu	37	chr19	58945489	58945489	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcaaggttggagttattgTtaaaagctcttccacattca	9	7	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58945489	C	C	58945489	3	2	130	1	0	0	0	0	1	0	0	0	17848	1725	60	5	802	5	ZNF132	19	58945489	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	80712	58945489	183494	882	117858											
TRIB3	57761	broad.mit.edu	37	chr20	376888	376888	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggactcctgcgtgctgactGggccagatgattccctgtgg	14	11	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	376888	A	A	376888	3	1	130	1	0	0	0	0	1	0	0	0	16608	1348	47	4	641	4	TRIB3	20	376888	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08		376888	62648632	883	117859											
C20orf54	113278	broad.mit.edu	37	chr20	742592	742592	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacccatgtggaaaattccAggttgcctggctcaagtggg	13	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	742592	G	G	742592	1	3	130	0	1	0	0	0	0	0	0	0	2136	203	7	5		5	C20orf54	20	742592	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	365704	742592	62282928	884	117860											
PSMF1	9491	broad.mit.edu	37	chr20	1107881	1107881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagtctctgccttggaaaGgcaatattcctaaatcagag	8	8	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1107881	T	T	1107881	1	4	130	0	1	0	0	0	0	0	0	0	12816	1015	35	2		2	PSMF1	20	1107881	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	365289	1107881	61917639	885	117861											
SIRPB2	284759	broad.mit.edu	37	chr20	1457827	1457827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttataacatggttctctgGggtcctagttctgcagttga	11	7	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1457827	T	T	1457827	1	4	130	0	1	0	0	0	0	0	0	0	14447	1247	43	2		2	SIRPB2	20	1457827	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	349946	1457827	61567693	886	117862											
SIRPG	55423	broad.mit.edu	37	chr20	1615854	1615854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttattttacagcaagtgtGgatattacttttaaaatgag	8	4	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1615854	T	T	1615854	1	4	130	0	1	0	0	0	0	0	0	0	14449	1363	47	2		2	SIRPG	20	1615854	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	158027	1615854	61409666	887	117863											
ATRN	8455	broad.mit.edu	37	chr20	3527985	3527985	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagagtgtaagatcagtaaTagcagcgatactgttgaatg	13	4	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3527985	C	C	3527985	2	2	130	1	0	0	0	0	0	0	0	1	1210	1403	49	5		5	ATRN	20	3527985	Silent	SNP	T	TCGA-44-6778-01A-11D-1855-08	1912131	3527985	59497535	888	117864											
SIGLEC1	6614	broad.mit.edu	37	chr20	3674161	3674161	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggggcccacaccgcagcgGtaggaggtggcatccctgac	17	13	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3674161	T	T	3674161	4	4	130	1	0	0	0	0	0	1	0	0	14418	1256	44	3	1724	3	SIGLEC1	20	3674161	Nonsense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	146176	3674161	59351359	889	117865											
PLCB1	23236	broad.mit.edu	37	chr20	8352142	8352142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagatgctgccttgattGtttggctgtgtcacaatatc	9	10	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8352142	T	T	8352142	1	4	130	0	1	0	0	0	0	0	0	0	12122	1392	48	3		3	PLCB1	20	8352142	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	4677981	8352142	54673378	890	117866											
PAK7	57144	broad.mit.edu	37	chr20	9543540	9543540	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gataataaagaagcctacctGgtgtgagtcacaatgtctgt	10	7	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9543540	A	A	9543540	2	1	130	1	0	0	0	0	0	0	0	1	11499	1335	47	4		4	PAK7	20	9543540	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	1191398	9543540	53481980	891	117867											
PAK7	57144	broad.mit.edu	37	chr20	9543572	9543572	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgtctgtcaaggcaccacCttctagaaactccatgacca	6	13	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9543572	T	T	9543572	3	4	130	1	0	0	0	0	1	0	0	0	11499	681	24	4	597	4	PAK7	20	9543572	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	32	9543572	53481948	892	117868											
ANKRD5	63926	broad.mit.edu	37	chr20	10025083	10025083	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaagcgtcaagagaaggGgtagtggaaatagttcgagg	17	3	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10025083	T	T	10025083	2	4	130	1	0	0	0	0	0	0	0	1	676	1219	43	2		2	ANKRD5	20	10025083	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	481511	10025083	53000437	893	117869											
MACROD2	140733	broad.mit.edu	37	chr20	14474029	14474029	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatgtatgtatatgagacAtatgatcattattagcttta	6	3	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14474029	C	C	14474029	1	2	130	0	1	0	0	0	0	0	0	0	9234	232	8	5		5	MACROD2	20	14474029	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	4448946	14474029	48551491	894	117870											
C20orf12	55184	broad.mit.edu	37	chr20	18365244	18365244	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaacggaggtgcactgaaGgacttgaacatgtgacccta	12	8	0	4			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18365244	A	A	18365244	1	1	130	0	1	0	0	0	0	0	0	0	2107	1015	35	4		4	C20orf12	20	18365244	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	3891215	18365244	44660276	895	117871											
CST9L	128821	broad.mit.edu	37	chr20	23545530	23545530	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcctcaggagagtagtgcTgatgtccacggaatgtggga	15	7	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23545530	A	A	23545530	1	1	130	0	1	0	0	0	0	0	0	0	4014	1595	55	5		5	CST9L	20	23545530	3'UTR	SNP	T	TCGA-44-6778-01A-11D-1855-08	5180286	23545530	39479990	896	117872											
CST4	1472	broad.mit.edu	37	chr20	23666528	23666528	+	3'UTR	DEL	C	-	-													tgtgactggcctggcacagaCccctaggcttcttgacacct							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23666528	-	-	23666528	6	5	130	0	1	1	0	1	0	0	0	0	4008	522	18	0		0	CST4	20	23666528	3'UTR	DEL	C	TCGA-44-6778-01A-11D-1855-08	120998	23666528	39358992	897	117873											
C20orf186	149954	broad.mit.edu	37	chr20	31683109	31683109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacagtgacaagggcttgCaggctagacccccatgggtg	15	10	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31683109	A	A	31683109	1	1	130	0	1	0	0	0	0	0	0	0	2120	725	25	3		3	C20orf186	20	31683109	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	8016581	31683109	31342411	898	117874											
MYL9	10398	broad.mit.edu	37	chr20	35176463	35176463	+	Frame_Shift_Del	DEL	G	-	-													cccacagacgaatacctggaGggcatgatgagcgaggcccc							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35176463	-	-	35176463	7	5	130	1	0	1	0	1	0	0	0	0	10148	991	35	0	219	0	MYL9	20	35176463	Frame_Shift_Del	DEL	G	TCGA-44-6778-01A-11D-1855-08	3493354	35176463	27849057	899	117875											
LBP	3929	broad.mit.edu	37	chr20	36975117	36975117	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgggtacagtggggacaggGagtggggacacagaccggac	19	8	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36975117	T	T	36975117	1	4	130	0	1	0	0	0	0	0	0	0	8723	1189	41	3		3	LBP	20	36975117	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1798654	36975117	26050403	900	117876											
PTPRT	11122	broad.mit.edu	37	chr20	40739070	40739070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatagcagggaacgccgtGgtcaggccagctggtgaagt	17	9	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40739070	T	T	40739070	3	4	130	1	0	0	0	0	1	0	0	0	12920	1348	47	2	1204	2	PTPRT	20	40739070	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	3763953	40739070	22286450	901	117877											
MYBL2	4605	broad.mit.edu	37	chr20	42338473	42338473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttggacctgcagggtgGggagagggatgggacgagaa	20	5	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42338473	T	T	42338473	1	4	130	0	1	0	0	0	0	0	0	0	10104	1247	43	2		2	MYBL2	20	42338473	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1599403	42338473	20687047	902	117878											
HNF4A	3172	broad.mit.edu	37	chr20	42984471	42984471	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgtgaacgcgcccctcggGgctccagtggagagttctta	14	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42984471	C	C	42984471	2	2	130	1	0	0	0	0	0	0	0	1	7320	1219	43	4		4	HNF4A	20	42984471	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	645998	42984471	20041049	903	117879											
SEMG1	6406	broad.mit.edu	37	chr20	43836284	43836284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaacaagaaggcagagacCatgataaatcaaaaggtcat	8	6	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43836284	T	T	43836284	3	4	130	1	0	0	0	0	1	0	0	0	14157	594	21	4	352	4	SEMG1	20	43836284	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	851813	43836284	19189236	904	117880											
SEMG1	6406	broad.mit.edu	37	chr20	43836956	43836956	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcaagagcaagagcatAgccaaaaggcaaataaaata	8	8	1	2	rs56342547		TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43836956	G	G	43836956	3	3	130	1	0	0	0	0	1	0	0	0	14157	420	15	5	1024	5	SEMG1	20	43836956	Missense_Mutation	SNP	A	TCGA-44-6778-01A-11D-1855-08	672	43836956	19188564	905	117881											
EYA2	2139	broad.mit.edu	37	chr20	45633570	45633570	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagatttaatcttccctcTttccacacagatcttgccca	5	13	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45633570	A	A	45633570	1	1	130	0	1	0	0	0	0	0	0	0	5372	1624	56	5		5	EYA2	20	45633570	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	1796614	45633570	17391950	906	117882											
SULF2	55959	broad.mit.edu	37	chr20	46331179	46331179	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtgcctgagtcacaatctGaacccaagtagtctggctcc	9	12	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46331179	C	C	46331179	1	2	130	0	1	0	0	0	0	0	0	0	15489	1305	45	4		4	SULF2	20	46331179	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	697609	46331179	16694341	907	117883											
SULF2	55959	broad.mit.edu	37	chr20	46365749	46365749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggcaccggcaccagggGgctctcagcacgtggcatcc	16	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46365749	T	T	46365749	1	4	130	0	1	0	0	0	0	0	0	0	15489	1247	43	2		2	SULF2	20	46365749	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	34570	46365749	16659771	908	117884											
PREX1	57580	broad.mit.edu	37	chr20	47258890	47258890	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgggtcatgggccctccCcaggtgtgacaggaggaacc	14	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47258890	T	T	47258890	1	4	130	0	1	0	0	0	0	0	0	0	12582	638	22	4		4	PREX1	20	47258890	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	893141	47258890	15766630	909	117885											
ZNFX1	57169	broad.mit.edu	37	chr20	47865914	47865914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacaaggccacacagatgCggttggatatctgcagaaaa	13	8	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47865914	A	A	47865914	3	1	130	1	0	0	0	0	1	0	0	0	18334	768	27	3	2113	3	ZNFX1	20	47865914	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	607024	47865914	15159606	910	117886											
ATP9A	10079	broad.mit.edu	37	chr20	50244027	50244027	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaacaacagtgaacccagTgtgcccagaaatgacatcag	8	11	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50244027	A	A	50244027	1	1	130	0	1	0	0	0	0	0	0	0	1202	1711	59	5		5	ATP9A	20	50244027	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	2378113	50244027	12781493	911	117887											
BIRC7	79444	broad.mit.edu	37	chr20	61867933	61867933	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgacggagcagtggtcCtgcaagcccctccagtgccc	12	15	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61867933	T	T	61867933	1	4	130	0	1	0	0	0	0	0	0	0	1445	696	24	4		4	BIRC7	20	61867933	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	11623906	61867933	1157587	912	117888											
TPTE	7179	broad.mit.edu	37	chr21	10907119	10907120	+	Intron	DNP	TG	CT	CT													ttgggtacccacgttagagcTggaagaaacaaaaaaagaac							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	10907120	CT	CT	10907119	1	2	130	0	1	0	0	0	0	0	0	0	16554	1595	55	5		5	TPTE	21	10907119	Intron	DNP	TG	TCGA-44-6778-01A-11D-1855-08		10907119	37222776	913	117889											
TPTE	7179	broad.mit.edu	37	chr21	10909548	10909548	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttgcattaaaccaaattaGacctccccgcaggaaacctg	7	13	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10909548	T	T	10909548	1	4	130	0	1	0	0	0	0	0	0	0	16554	957	33	3		3	TPTE	21	10909548	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2429	10909548	37220347	914	117890											
TPTE	7179	broad.mit.edu	37	chr21	10910351	10910351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcatacagaggtagacCgtcgaatacatcaattaata	6	8	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10910351	A	A	10910351	3	1	130	1	0	0	0	0	1	0	0	0	16554	652	23	1	262	1	TPTE	21	10910351	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	803	10910351	37219544	915	117891											
TPTE	7179	broad.mit.edu	37	chr21	10971816	10971816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtgggtatgggcaaaggCagtcagcctcacataacggt	14	8	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10971816	A	A	10971816	1	1	130	0	1	0	0	0	0	0	0	0	16554	725	25	3		3	TPTE	21	10971816	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	61465	10971816	37158079	916	117892											
USP16	10600	broad.mit.edu	37	chr21	30415997	30415997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtagtctgaatgacattGgttagacatgtctgttattt	9	4	2	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30415997	T	T	30415997	1	4	130	0	1	0	0	0	0	0	0	0	17173	1363	47	2		2	USP16	21	30415997	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	19444181	30415997	17713898	917	117893											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744130	31744130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagggaagggaagccacaGcttccataacccagggatct	12	12	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31744130	T	T	31744130	3	4	130	1	0	0	0	0	1	0	0	0	8594	962	34	3	129	3	KRTAP13-2	21	31744130	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1328133	31744130	16385765	918	117894											
KRTAP13-4	284827	broad.mit.edu	37	chr21	31802964	31802964	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggaggctgtggttttccttCcctgagttacggatccagat	12	9	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31802964	G	G	31802964	3	3	130	1	0	0	0	0	1	0	0	0	8596	855	30	4	373	4	KRTAP13-4	21	31802964	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	58834	31802964	16326931	919	117895											
KRTAP19-7	337974	broad.mit.edu	37	chr21	31933446	31933446	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagaagaccagtatccccCatagcatgatgggtggcagc	11	12	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31933446	T	T	31933446	3	4	130	1	0	0	0	0	1	0	0	0	8605	594	21	4	31	4	KRTAP19-7	21	31933446	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	130482	31933446	16196449	920	117896											
HUNK	30811	broad.mit.edu	37	chr21	33346920	33346920	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcacatgaccgagaagcTgggttacaagaacagcgacg	13	10	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33346920	A	A	33346920	3	1	130	1	0	0	0	0	1	0	0	0	7528	1580	55	5	1090	5	HUNK	21	33346920	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	1413474	33346920	14782975	921	117897											
MCM3AP	8888	broad.mit.edu	37	chr21	47664609	47664609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagacacacggaggtggaCgtgcagccctcacactggtg	15	11	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47664609	A	A	47664609	1	1	130	0	1	0	0	0	0	0	0	0	9481	551	19	3		3	MCM3AP	21	47664609	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	14317689	47664609	465286	922	117898											
CYTSA	23384	broad.mit.edu	37	chr22	24718090	24718090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcatagagcgctcccGgaaggggagcagcgggaatg	16	12	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24718090	T	T	24718090	3	4	130	1	0	0	0	0	1	0	0	0	4242	1116	39	1	1152	1	CYTSA	22	24718090	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08		24718090	26586476	923	117899											
MYO18B	84700	broad.mit.edu	37	chr22	26164978	26164978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaagtgcagggcgagttGggggacgatctgagaatggg	19	6	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26164978	T	T	26164978	3	4	130	1	0	0	0	0	1	0	0	0	10160	1339	47	2	1105	2	MYO18B	22	26164978	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	1446888	26164978	25139588	924	117900											
SEZ6L	23544	broad.mit.edu	37	chr22	26702165	26702165	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcccagaatattagaacaTggcttgaggacttggagtct	10	8	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26702165	C	C	26702165	1	2	130	0	1	0	0	0	0	0	0	0	14256	1479	51	5		5	SEZ6L	22	26702165	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	537187	26702165	24602401	925	117901											
ASPHD2	57168	broad.mit.edu	37	chr22	26839048	26839048	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaacctgtcctctcacccCtccttcccccccaggttcag	5	20	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26839048	A	A	26839048	1	1	130	0	1	0	0	0	0	0	0	0	1059	696	24	2		2	ASPHD2	22	26839048	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	136883	26839048	24465518	926	117902											
MN1	4330	broad.mit.edu	37	chr22	28193499	28193500	+	Missense_Mutation	DNP	CC	AA	AA													aggagcaactcagcccccttCccccaggatggcgacgtgag							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	28193500	AA	AA	28193499	3	1	130	1	0	0	0	0	1	0	0	0	9767	842	30	3	937	3	MN1	22	28193499	Missense_Mutation	DNP	CC	TCGA-44-6778-01A-11D-1855-08	1354451	28193499	23111067	927	117903											
EWSR1	2130	broad.mit.edu	37	chr22	29695514	29695514	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctgtgagagaaggaagcaGagcagcttccacagtgtcca	13	9	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29695514	C	C	29695514	1	2	130	0	1	0	0	0	0	0	0	0	5338	957	33	4		4	EWSR1	22	29695514	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1502015	29695514	21609052	928	117904											
RFPL1	5988	broad.mit.edu	37	chr22	29837555	29837555	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgaccttggatgccgacaCagccaacaacttcctcctca	6	15	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29837555	G	G	29837555	3	3	130	1	0	0	0	0	1	0	0	0	13361	478	17	4	404	4	RFPL1	22	29837555	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	142041	29837555	21467011	929	117905											
CYTH4	27128	broad.mit.edu	37	chr22	37695373	37695373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtcctggggcagggtcccGgccctcaagggtggcacagc	16	13	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37695373	T	T	37695373	1	4	130	0	1	0	0	0	0	0	0	0	4239	1131	39	1		1	CYTH4	22	37695373	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	7857818	37695373	13609193	930	117906											
MICALL1	85377	broad.mit.edu	37	chr22	38321897	38321897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggacaaggaggaagagGctccagctgcacccagcctg	15	11	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38321897	T	T	38321897	3	4	130	1	0	0	0	0	1	0	0	0	9666	1203	42	3	1342	3	MICALL1	22	38321897	Missense_Mutation	SNP	G	TCGA-44-6778-01A-11D-1855-08	626524	38321897	12982669	931	117907											
MPPED1	758	broad.mit.edu	37	chr22	43870647	43870647	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacgagtacaagatcgtgatCgcaggcaaccacgagctgac	11	11	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43870647	T	T	43870647	2	4	130	1	0	0	0	0	0	0	0	1	9835	874	31	4		4	MPPED1	22	43870647	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08	5548750	43870647	7433919	932	117908											
PKDREJ	10343	broad.mit.edu	37	chr22	46655394	46655394	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtgttgatgctacctcGgtagagagttgtgaaatgtg	14	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46655394	T	T	46655394	2	4	130	1	0	0	0	0	0	0	0	1	12065	1124	39	1		1	PKDREJ	22	46655394	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	2784747	46655394	4649172	933	117909											
SLC25A6	293	broad.mit.edu	37	chrX	1508534	1508534	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctccagaaggacagcacGccctgctccttggggatgcg	12	16	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1508534	T	T	1508534	2	4	130	1	0	0	0	0	0	0	0	1	14627	1074	38	3		3	SLC25A6	23	1508534	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08		1508534	153762026	934	117910											
P2RY8	286530	broad.mit.edu	37	chrX	1584526	1584526	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggcacccggcggcagCccaaatattcccgcaggcgc	12	17	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1584526	G	G	1584526	3	3	130	1	0	0	0	0	1	0	0	0	11449	739	26	4	157	4	P2RY8	23	1584526	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	75992	1584526	153686034	935	117911											
MAGEB10	139422	broad.mit.edu	37	chrX	27830894	27830894	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaagatccatggtacagtCcccagtgccttcccatccca	7	17	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27830894	A	A	27830894	1	1	130	0	1	0	0	0	0	0	0	0	9265	870	30	3		3	MAGEB10	23	27830894	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	26246368	27830894	127439666	936	117912											
DMD	1756	broad.mit.edu	37	chrX	32509377	32509377	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattatgctccaaatggaaGgagaagagattcttacctta	9	6	1	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32509377	A	A	32509377	1	1	130	0	1	0	0	0	0	0	0	0	4620	1015	35	4		4	DMD	23	32509377	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	4678483	32509377	122761183	937	117913											
SHROOM4	57477	broad.mit.edu	37	chrX	50350571	50350571	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accctgtctcgagccctccaGgtggccaaagctgaggggtt	13	13	1	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50350571	A	A	50350571	2	1	130	1	0	0	0	0	0	0	0	1	14409	991	35	4		4	SHROOM4	23	50350571	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	17841194	50350571	104919989	938	117914											
WNK3	65267	broad.mit.edu	37	chrX	54359977	54359977	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagaagcagagaaggtacTgtttttctcctttagtctag	9	9	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54359977	C	C	54359977	3	2	130	1	0	0	0	0	1	0	0	0	17506	1580	55	5	5364	5	WNK3	23	54359977	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	4009406	54359977	100910583	939	117915											
VSIG4	11326	broad.mit.edu	37	chrX	65242611	65242611	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgccacaccccccttcctcCacatttcctgccagtaatca	4	19	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65242611	G	G	65242611	1	3	130	0	1	0	0	0	0	0	0	0	17352	609	21	4		4	VSIG4	23	65242611	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	10882634	65242611	90027949	940	117916											
TAF1	6872	broad.mit.edu	37	chrX	70613120	70613120	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtatatTtatatttgtgtgtggctatt	13	1	0	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70613120	A	A	70613120	1	1	130	0	1	0	0	0	0	0	0	0	15632	1856	64	5		5	TAF1	23	70613120	Intron	SNP	T	TCGA-44-6778-01A-11D-1855-08	5370509	70613120	84657440	941	117917											
CPXCR1	53336	broad.mit.edu	37	chrX	88009303	88009303	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaattaagacaacattcatgCagctcttctgggaattaaat	7	7	3	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88009303	G	G	88009303	3	3	130	1	0	0	0	0	1	0	0	0	3868	718	25	4	890	4	CPXCR1	23	88009303	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	17396183	88009303	67261257	942	117918											
DIAPH2	1730	broad.mit.edu	37	chrX	96603405	96603405	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatttttttaataagaattGacagatattttatacctgtg	5	4	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96603405	C	C	96603405	1	2	130	0	1	0	0	0	0	0	0	0	4559	1305	45	4		4	DIAPH2	23	96603405	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	8594102	96603405	58667155	943	117919											
CHRDL1	91851	broad.mit.edu	37	chrX	109937385	109937385	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatacaaaagaaggatgccCcttaccttgtccatgcttgt	8	10	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109937385	G	G	109937385	1	3	130	0	1	0	0	0	0	0	0	0	3404	638	22	4		4	CHRDL1	23	109937385	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	13333980	109937385	45333175	944	117920											
DCX	1641	broad.mit.edu	37	chrX	110574146	110574146	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaccgtcttggtcgttaCctgagtcagctggagacttg	11	11	3	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110574146	A	A	110574146	5	1	130	1	0	0	0	0	0	0	1	0	4351	521	18	3	177	3	DCX	23	110574146	Splice_Site	SNP	C	TCGA-44-6778-01A-11D-1855-08	636761	110574146	44696414	945	117921											
ODZ1	10178	broad.mit.edu	37	chrX	123838773	123838773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccaaatgtgtacatgcCagaatcgagagaaaaacccc	9	10	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123838773	A	A	123838773	1	1	130	0	1	0	0	0	0	0	0	0	10929	609	21	2		2	ODZ1	23	123838773	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	13264627	123838773	31431787	946	117922											
SASH3	54440	broad.mit.edu	37	chrX	128926953	128926953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtgccgatggcctgcCtctgcctacaggagcacaca	11	15	1	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128926953	A	A	128926953	1	1	130	0	1	0	0	0	0	0	0	0	13961	696	24	2		2	SASH3	23	128926953	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	5088180	128926953	26343607	947	117923											
MAP7D3	79649	broad.mit.edu	37	chrX	135301625	135301625	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaggactttggcaagatGtcatggaatccttcagattt	10	7	3	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135301625	A	A	135301625	2	1	130	1	0	0	0	0	0	0	0	1	9361	1368	48	4		4	MAP7D3	23	135301625	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	6374672	135301625	19968935	948	117924											
MCF2	4168	broad.mit.edu	37	chrX	138708796	138708796	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcacttattaatagtttgCcagtcaccacttatttgccg	5	11	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138708796	T	T	138708796	4	4	130	1	0	0	0	0	0	1	0	0	9471	740	26	4	2383	4	MCF2	23	138708796	Nonsense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	3407171	138708796	16561764	949	117925											
MCF2	4168	broad.mit.edu	37	chrX	138724575	138724576	+	Intron	DNP	CA	AT	AT													agcaccatgctgcagcatccCagcacttgaacttgggaaca							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	138724576	AT	AT	138724575	1	1	130	0	1	0	0	0	0	0	0	0	9471	609	21	2		2	MCF2	23	138724575	Intron	DNP	CA	TCGA-44-6778-01A-11D-1855-08	15779	138724575	16545985	950	117926	513	2									
MCF2	4168	broad.mit.edu	37	chrX	138724576	138724576	+	Intron	SNP	A	T	T													gcaccatgctgcagcatcccAgcacttgaacttgggaacag							TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138724576	T	T	138724576	1	4	130	0	1	0	0	0	0	0	0	0	9471	203	7	5		5	MCF2	23	138724576	Intron	SNP	A	TCGA-44-6778-01A-11D-1855-08	1	138724576	16545984	951	117927	513	2									
ATP11C	286410	broad.mit.edu	37	chrX	138882100	138882100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattacaggcgtgagctacCgcacccggcctatattcctt	10	13	0	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138882100	A	A	138882100	1	1	130	0	1	0	0	0	0	0	0	0	1125	667	23	1		1	ATP11C	23	138882100	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	157524	138882100	16388460	952	117928											
MAGEC1	9947	broad.mit.edu	37	chrX	140993020	140993020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgccccagctttgagcaaGgcttccagaaggcaattttc	9	13	0	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140993020	T	T	140993020	1	4	130	0	1	0	0	0	0	0	0	0	9272	1015	35	2		2	MAGEC1	23	140993020	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	2110920	140993020	14277540	953	117929											
FMR1NB	158521	broad.mit.edu	37	chrX	147062922	147062922	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaggcggcacccggagcCatgtcttcacataggaggaa	14	11	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147062922	A	A	147062922	1	1	130	0	1	0	0	0	0	0	0	0	6019	609	21	2		2	FMR1NB	23	147062922	5'UTR	SNP	C	TCGA-44-6778-01A-11D-1855-08	6069902	147062922	8207638	954	117930											
MAGEA12	4111	broad.mit.edu	37	chrX	151899634	151899634	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagttcattcaaccatccGttaaaaggaacatttgaaca	6	8	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151899634	A	A	151899634	1	1	130	0	1	0	0	0	0	0	0	0	9254	1160	40	4		4	MAGEA12	23	151899634	3'UTR	SNP	G	TCGA-44-6778-01A-11D-1855-08	4836712	151899634	3370926	955	117931											
L1CAM	3897	broad.mit.edu	37	chrX	153138764	153138764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacaggcagccccagagtgGggcagatggcaggggacata	17	9	0	3			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153138764	A	A	153138764	1	1	130	0	1	0	0	0	0	0	0	0	8660	1247	43	4		4	L1CAM	23	153138764	Intron	SNP	G	TCGA-44-6778-01A-11D-1855-08	1239130	153138764	2131796	956	117932											
PLXNA3	55558	broad.mit.edu	37	chrX	153689939	153689939	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagggcactctggctctGccctggctgctgaacaagga	16	11	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153689939	T	T	153689939	2	4	130	1	0	0	0	0	0	0	0	1	12216	1306	46	3		3	PLXNA3	23	153689939	Silent	SNP	G	TCGA-44-6778-01A-11D-1855-08	551175	153689939	1580621	957	117933											
F8	2157	broad.mit.edu	37	chrX	154158604	154158604	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaccttccacagattttTctggtcctaaggatactaat	6	10	2	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154158604	C	C	154158604	3	2	130	1	0	0	0	0	1	0	0	0	5393	1783	62	5	3674	5	F8	23	154158604	Missense_Mutation	SNP	T	TCGA-44-6778-01A-11D-1855-08	468665	154158604	1111956	958	117934											
VAMP7	6845	broad.mit.edu	37	chrX	155169495	155169495	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtgtatggctttatttttCaatctctaagaaattaggta	7	4	2	1			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155169495	T	T	155169495	1	4	130	0	1	0	0	0	0	0	0	0	17244	841	29	4		4	VAMP7	23	155169495	Intron	SNP	C	TCGA-44-6778-01A-11D-1855-08	1010891	155169495	101065	959	117935											
PCDH11Y	83259	broad.mit.edu	37	chrY	4967791	4967791	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaccgtccactaatccaggCacagtggtctttcaggtaat	8	12	2	0			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4967791	A	A	4967791	2	1	130	1	0	0	0	0	0	0	0	1	11603	697	25	3		3	PCDH11Y	24	4967791	Silent	SNP	C	TCGA-44-6778-01A-11D-1855-08		4967791	54405775	960	117936											
PCDH11Y	83259	broad.mit.edu	37	chrY	4968236	4968236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagatgtcgccaggcaccaCaccttaaggctgctcagaaa	9	12	1	2			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4968236	A	A	4968236	3	1	130	1	0	0	0	0	1	0	0	0	11603	478	17	3	2659	3	PCDH11Y	24	4968236	Missense_Mutation	SNP	C	TCGA-44-6778-01A-11D-1855-08	445	4968236	54405330	961	117937											
SSU72	29101	broad.mit.edu	37	chr1	1479105	1479106	+	Intron	INS	-	CT	CT													tcacggcctcggccactcccINSctgtcacggcctcggccact					rs5772046		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	1479106	CT	CT	1479105	6	5	131	0	1	1	1	0	0	0	0	0	15320	638	22	0		0	SSU72	1	1479105	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08		1479105	247771516	1	117938											
PRDM2	7799	broad.mit.edu	37	chr1	14142945	14142945	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcctccgcttggcgtcccGatgctctccaccagcggccc	10	20	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14142945	A	A	14142945	3	1	131	1	0	0	0	0	1	0	0	0	12564	1058	37	4	5107	4	PRDM2	1	14142945	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	12663840	14142945	235107676	2	117939											
NBPF1	55672	broad.mit.edu	37	chr1	16890853	16890853	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttatgttgggatagaaaAgggccaggtagaaaacaatg	12	5	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16890853	G	G	16890853	1	3	131	0	1	0	0	0	0	0	0	0	10286	87	3	5		5	NBPF1	1	16890853	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	2747908	16890853	232359768	3	117940											
NBPF1	55672	broad.mit.edu	37	chr1	16891942	16891942	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agactaggaagagagccatgCtcactgacccatcccatgtc	9	13	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16891942	T	T	16891942	1	4	131	0	1	0	0	0	0	0	0	0	10286	812	28	4		4	NBPF1	1	16891942	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	1089	16891942	232358679	4	117941											
UBR4	23352	broad.mit.edu	37	chr1	19448475	19448475	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgatggttcgctgggcgGcaatctctgcacaggctttc	13	10	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19448475	A	A	19448475	3	1	131	1	0	0	0	0	1	0	0	0	17030	1203	42	4	5863	4	UBR4	1	19448475	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	2556533	19448475	229802146	5	117942											
CAPZB	832	broad.mit.edu	37	chr1	19683282	19683282	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagatctgttgagctgagggAgagcctgaagtggcccctgg	17	8	1	5			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19683282	G	G	19683282	1	3	131	0	1	0	0	0	0	0	0	0	2669	319	11	5		5	CAPZB	1	19683282	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	234807	19683282	229567339	6	117943											
EIF4G3	8672	broad.mit.edu	37	chr1	21307744	21307744	+	Intron	DEL	T	-	-													ggaaggggagaaaaaaaaaaTttttttttttttttaacaca							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21307744	-	-	21307744	6	5	131	0	1	1	0	1	0	0	0	0	5080	1508	52	0		0	EIF4G3	1	21307744	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	1624462	21307744	227942877	7	117944											
CCDC21	64793	broad.mit.edu	37	chr1	26581649	26581649	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttacttatggaagactAttctctccccagatttttgc	5	9	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26581649	G	G	26581649	1	3	131	0	1	0	0	0	0	0	0	0	2823	464	16	5		5	CCDC21	1	26581649	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	5273905	26581649	222668972	8	117945											
EPB41	2035	broad.mit.edu	37	chr1	29314234	29314234	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccaaatctcaggtgtcCgaggaagaaggcaaagaagt	13	8	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29314234	A	A	29314234	2	1	131	1	0	0	0	0	0	0	0	1	5193	639	23	1		1	EPB41	1	29314234	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	2732585	29314234	219936387	9	117946											
PHC2	1912	broad.mit.edu	37	chr1	33794405	33794405	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctaatcctcctggtggtGggagggtctctcattttctc	10	11	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33794405	T	T	33794405	1	4	131	0	1	0	0	0	0	0	0	0	11912	1363	47	2		2	PHC2	1	33794405	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	4480171	33794405	215456216	10	117947											
PRPF38A	84950	broad.mit.edu	37	chr1	52871234	52871234	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tactgttattaatacacattCgttctcctaatattacactg	3	9	1	0	rs140763730	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52871234	T	T	52871234	1	4	131	0	1	0	0	0	0	0	0	0	12673	899	31	4		4	PRPF38A	1	52871234	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	19076829	52871234	196379387	11	117948											
INADL	10207	broad.mit.edu	37	chr1	62349930	62349930	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgatcccgaatgatgtccAaggtcctagcttgctcattg	9	11	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62349930	G	G	62349930	3	3	131	1	0	0	0	0	1	0	0	0	7801	130	5	5	3063	5	INADL	1	62349930	Missense_Mutation	SNP	A	TCGA-44-6779-01A-11D-1855-08	9478696	62349930	186900691	12	117949											
GBP7	388646	broad.mit.edu	37	chr1	89618472	89618472	+	Intron	DEL	G	-	-													agggtcactctagtgttaaaGaaaaaaaaaaaaaaaatgga							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89618472	-	-	89618472	6	5	131	0	1	1	0	1	0	0	0	0	6341	957	33	0		0	GBP7	1	89618472	Intron	DEL	G	TCGA-44-6779-01A-11D-1855-08	27268542	89618472	159632149	13	117950											
AGL	178	broad.mit.edu	37	chr1	100349737	100349737	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaacacgaaaccttatagGaaggatgagaattcaatcaa	8	6	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100349737	T	T	100349737	3	4	131	1	0	0	0	0	1	0	0	0	384	1165	41	3	2505	3	AGL	1	100349737	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	10731265	100349737	148900884	14	117951											
DBT	1629	broad.mit.edu	37	chr1	100676288	100676288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagttttcatccacagaagCgttaaggataggaaactgta	10	7	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100676288	A	A	100676288	3	1	131	1	0	0	0	0	1	0	0	0	4291	768	27	3	485	3	DBT	1	100676288	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	326551	100676288	148574333	15	117952											
VAV3	10451	broad.mit.edu	37	chr1	108303377	108303377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgagtgaataaatggaCaataaataaactgttttaag	8	2	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108303377	A	A	108303377	1	1	131	0	1	0	0	0	0	0	0	0	17260	493	17	3		3	VAV3	1	108303377	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	7627089	108303377	140947244	16	117953											
KIAA1324	57535	broad.mit.edu	37	chr1	109707159	109707159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagtttctggatatgaagGaccagtcatgtaagccatgc	13	7	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109707159	T	T	109707159	3	4	131	1	0	0	0	0	1	0	0	0	8293	1174	41	3	323	3	KIAA1324	1	109707159	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1403782	109707159	139543462	17	117954											
SARS	6301	broad.mit.edu	37	chr1	109779253	109779253	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcctttggggtgcactGgtccccagcatcatgggaaa	12	12	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109779253	A	A	109779253	1	1	131	0	1	0	0	0	0	0	0	0	13956	1363	47	4		4	SARS	1	109779253	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	72094	109779253	139471368	18	117955											
MAGI3	260425	broad.mit.edu	37	chr1	114186352	114186352	+	Intron	DEL	T	-	-													tggttttaaactttggttcaTtttttttttaaggtcctcct							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114186352	-	-	114186352	6	5	131	0	1	1	0	1	0	0	0	0	9284	1508	52	0		0	MAGI3	1	114186352	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	4407099	114186352	135064269	19	117956											
CSDE1	7812	broad.mit.edu	37	chr1	115260851	115260851	+	Intron	DEL	A	-	-													caaacccctgtgggggggagAaaaaaaaaaccctgcagtta							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115260851	-	-	115260851	6	5	131	0	1	1	0	1	0	0	0	0	3963	261	9	0		0	CSDE1	1	115260851	Intron	DEL	A	TCGA-44-6779-01A-11D-1855-08	1074499	115260851	133989770	20	117957											
NBPF9	400818	broad.mit.edu	37	chr1	144815011	144815011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttccactaagcttatgtGgccatgacatgacaaggact	8	9	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144815011	T	T	144815011	1	4	131	0	1	0	0	0	0	0	0	0	10294	1363	47	2		2	NBPF9	1	144815011	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	29554160	144815011	104435610	21	117958											
PDE4DIP	9659	broad.mit.edu	37	chr1	144881004	144881004	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgaactggtgggagaagaGatcaccagctccaggaagca	13	9	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144881004	T	T	144881004	1	4	131	0	1	0	0	0	0	0	0	0	11737	957	33	3		3	PDE4DIP	1	144881004	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	65993	144881004	104369617	22	117959											
NBPF10	100132406	broad.mit.edu	37	chr1	145310995	145310995	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttctctgaaagtctcctgTtctcacactgacaagactga	6	11	3	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145310995	G	G	145310995	1	3	131	0	1	0	0	0	0	0	0	0	10287	1740	60	5		5	NBPF10	1	145310995	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	429991	145310995	103939626	23	117960											
LOC200030	200030	broad.mit.edu	37	chr1	148008506	148008506	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattgaacacactcttgTtttccctggacctggcatct	7	11	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148008506	C	C	148008506	1	2	131	0	1	0	0	0	0	0	0	0	8950	1740	60	5		5	LOC200030	1	148008506	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	2697511	148008506	101242115	24	117961											
NBPF15	284565	broad.mit.edu	37	chr1	148594621	148594621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacctggtgttccagatggGagtcatattcccacaataag	9	11	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148594621	A	A	148594621	3	1	131	1	0	0	0	0	1	0	0	0	10290	1174	41	4	2052	4	NBPF15	1	148594621	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	586115	148594621	100656000	25	117962											
FLG	2312	broad.mit.edu	37	chr1	152279897	152279897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggctgtgatgagaccCtgagtgtccagatctatcta	13	8	2	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152279897	A	A	152279897	3	1	131	1	0	0	0	0	1	0	0	0	5979	681	24	2	4724	2	FLG	1	152279897	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	3685276	152279897	96970724	26	117963											
DAP3	7818	broad.mit.edu	37	chr1	155671942	155671943	+	Intron	INS	-	A	A													aaaaaattgattctgcctatINSaaaaaaaaaaaaaaaaaaag					rs143247576		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155671943	A	A	155671942	6	5	131	0	1	1	1	0	0	0	0	0	4267	1421	49	0		0	DAP3	1	155671942	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	3392045	155671942	93578679	27	117964											
RIT1	6016	broad.mit.edu	37	chr1	155874531	155874532	+	In_Frame_Ins	INS	-	GTATCCAAA	GTATCCAAA													gatttaatacctgtccagctINSgtatccaaaatgtccagatt							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTATCCAAA	155874532	GTATCCAAA	GTATCCAAA	155874531	7	5	131	1	0	1	1	0	0	0	0	0	13497	1567	55	0	443	0	RIT1	1	155874531	In_Frame_Ins	INS	-	TCGA-44-6779-01A-11D-1855-08	202589	155874531	93376090	28	117965											
CD1B	910	broad.mit.edu	37	chr1	158301090	158301090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattgcacctaggaaagccCtgcttgctttttaaaatcca	6	11	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158301090	A	A	158301090	1	1	131	0	1	0	0	0	0	0	0	0	3005	696	24	2		2	CD1B	1	158301090	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2426559	158301090	90949531	29	117966											
NUF2	83540	broad.mit.edu	37	chr1	163313696	163313696	+	Intron	DEL	A	-	-													attttaatgcttttgtatctAaaaaaaaaaattagcaaatt							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	163313696	-	-	163313696	6	5	131	0	1	1	0	1	0	0	0	0	10842	377	13	0		0	NUF2	1	163313696	Intron	DEL	A	TCGA-44-6779-01A-11D-1855-08	5012606	163313696	85936925	30	117967											
DNM3	26052	broad.mit.edu	37	chr1	172376970	172376970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgcccactagaatcctccCtgttagactaaacgaagtgt	7	13	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172376970	A	A	172376970	3	1	131	1	0	0	0	0	1	0	0	0	4713	680	24	2	2663	2	DNM3	1	172376970	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	9063274	172376970	76873651	31	117968											
FAM5C	339479	broad.mit.edu	37	chr1	190068054	190068054	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggctgagcatgtagccGgtgttgcaggtgccgcagcg	16	12	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190068054	T	T	190068054	2	4	131	1	0	0	0	0	0	0	0	1	5645	1103	39	1		1	FAM5C	1	190068054	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	17691084	190068054	59182567	32	117969											
SLC41A1	254428	broad.mit.edu	37	chr1	205760707	205760707	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctatgagccagagaacaTggaagctgagtgctaggagc	13	10	0	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205760707	A	A	205760707	3	1	131	1	0	0	0	0	1	0	0	0	14743	1464	51	5	49	5	SLC41A1	1	205760707	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	15692653	205760707	43489914	33	117970											
HHAT	55733	broad.mit.edu	37	chr1	210536178	210536179	+	Intron	INS	-	T	T													gatttgtgactaacgaagacINStttttttttttggtcagaac							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210536179	T	T	210536178	6	5	131	0	1	1	1	0	0	0	0	0	7156	580	20	0		0	HHAT	1	210536178	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	4775471	210536178	38714443	34	117971											
KCNK2	3776	broad.mit.edu	37	chr1	215342563	215342563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggaaacatctcaccacGcacagaaggcggcaaaatat	8	10	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215342563	T	T	215342563	3	4	131	1	0	0	0	0	1	0	0	0	8136	1087	38	3	554	3	KCNK2	1	215342563	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	4806385	215342563	33908058	35	117972											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220345342	220345342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaggctgtgcgcatctgCtgccaccatggggacacaga	12	12	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220345342	A	A	220345342	3	1	131	1	0	0	0	0	1	0	0	0	13044	796	28	3	1767	3	RAB3GAP2	1	220345342	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	5002779	220345342	28905279	36	117973											
LYST	1130	broad.mit.edu	37	chr1	235904814	235904814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctctcttgtgcagcgtGggctggcgacaaaatatgca	11	10	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235904814	T	T	235904814	3	4	131	1	0	0	0	0	1	0	0	0	9216	1348	47	2	3231	2	LYST	1	235904814	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	15559472	235904814	13345807	37	117974											
GPR137B	7107	broad.mit.edu	37	chr1	236343183	236343183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccctcttttccagggctCctccgtgtgtcaagtgactg	10	14	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236343183	T	T	236343183	3	4	131	1	0	0	0	0	1	0	0	0	6711	855	30	4	706	4	GPR137B	1	236343183	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	438369	236343183	12907438	38	117975											
MEMO1	51072	broad.mit.edu	37	chr2	32157106	32157106	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaataaattctcaagcttcTccgacttaaaacaaaactac	3	11	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32157106	C	C	32157106	1	2	131	0	1	0	0	0	0	0	0	0	9564	1566	54	5		5	MEMO1	2	32157106	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08		32157106	211042267	39	117976											
LTBP1	4052	broad.mit.edu	37	chr2	33359878	33359878	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgagtaaccacactggccGcatcaaggtggtctttactc	10	11	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33359878	A	A	33359878	3	1	131	1	0	0	0	0	1	0	0	0	9160	1087	38	4	1125	4	LTBP1	2	33359878	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1202772	33359878	209839495	40	117977											
EPCAM	4072	broad.mit.edu	37	chr2	47606164	47606164	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaatgatgtggacataGctgatgtggcttattatttt	10	5	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47606164	A	A	47606164	3	1	131	1	0	0	0	0	1	0	0	0	5204	971	34	4	650	4	EPCAM	2	47606164	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	14246286	47606164	195593209	41	117978											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48848037	48848037	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgtaattgaaggagttcgGaatctatttgctgaagaagg	13	3	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48848037	T	T	48848037	2	4	131	1	0	0	0	0	0	0	0	1	15435	1161	41	3		3	STON1-GTF2A1L	2	48848037	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	1241873	48848037	194351336	42	117979											
NRXN1	9378	broad.mit.edu	37	chr2	51056660	51056660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaacagcacagtggcaaGtgcgatggccttataaggga	12	8	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51056660	T	T	51056660	1	4	131	0	1	0	0	0	0	0	0	0	10760	1044	36	3		3	NRXN1	2	51056660	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	2208623	51056660	192142713	43	117980											
XPO1	7514	broad.mit.edu	37	chr2	61721151	61721151	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagagttcagcagccaaatGattccagtattcaagacaaa	7	8	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61721151	T	T	61721151	3	4	131	1	0	0	0	0	1	0	0	0	17572	1290	45	3	2148	3	XPO1	2	61721151	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	10664491	61721151	181478222	44	117981											
THNSL2	55258	broad.mit.edu	37	chr2	88485519	88485519	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcggagatcgtagccctGgagcacaaggagacacgctg	14	13	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88485519	T	T	88485519	2	4	131	1	0	0	0	0	0	0	0	1	15986	1335	47	2		2	THNSL2	2	88485519	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	26764368	88485519	154713854	45	117982											
RGPD4	285190	broad.mit.edu	37	chr2	108488692	108488692	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttgtgccaatcacacaaTaactccagacatgagtttgc	6	11	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108488692	C	C	108488692	3	2	131	1	0	0	0	0	1	0	0	0	13396	1406	49	5	4310	5	RGPD4	2	108488692	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	20003173	108488692	134710681	46	117983											
RANBP2	5903	broad.mit.edu	37	chr2	109371850	109371850	+	Intron	DEL	T	-	-													ggcaaggggacattttggtcTttttttttttttttaagaca							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109371850	-	-	109371850	6	5	131	0	1	1	0	1	0	0	0	0	13136	1624	56	0		0	RANBP2	2	109371850	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	883158	109371850	133827523	47	117984											
PLEKHB2	55041	broad.mit.edu	37	chr2	131949243	131949243	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaagggcacaaaggaagcCagtcatgttgatccatgcct	10	12	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131949243	T	T	131949243	1	4	131	0	1	0	0	0	0	0	0	0	12160	609	21	4		4	PLEKHB2	2	131949243	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	22577393	131949243	111250130	48	117985											
LRP1B	53353	broad.mit.edu	37	chr2	141709451	141709451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcgcagtgccatttgctGctaatgcatcttccactttt	8	11	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141709451	T	T	141709451	3	4	131	1	0	0	0	0	1	0	0	0	9042	1310	46	3	11145	3	LRP1B	2	141709451	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	9760208	141709451	101489922	49	117986											
RIF1	55183	broad.mit.edu	37	chr2	152300263	152300263	+	Intron	DEL	T	-	-													cgtattttggataatagaccTtttttttttgttagtgcagt							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152300263	-	-	152300263	6	5	131	0	1	1	0	1	0	0	0	0	13468	1624	56	0		0	RIF1	2	152300263	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	10590812	152300263	90899110	50	117987											
ARL5A	26225	broad.mit.edu	37	chr2	152663470	152663470	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tattagcaaaaatcagcaatCcagcttttcttaggtcctat	5	9	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152663470	G	G	152663470	3	3	131	1	0	0	0	0	1	0	0	0	943	855	30	4	191	4	ARL5A	2	152663470	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	363207	152663470	90535903	51	117988											
GCA	25801	broad.mit.edu	37	chr2	163208879	163208879	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatgctgaagaacttcagaGatgtttgacacagtctggaa	12	6	2	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163208879	C	C	163208879	3	2	131	1	0	0	0	0	1	0	0	0	6345	942	33	4	234	4	GCA	2	163208879	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	10545409	163208879	79990494	52	117989											
FIGN	55137	broad.mit.edu	37	chr2	164466086	164466086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgcaaccaaacattttGttccattcaacatacatatc	3	11	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164466086	T	T	164466086	3	4	131	1	0	0	0	0	1	0	0	0	5948	1368	48	3	27	3	FIGN	2	164466086	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1257207	164466086	78733287	53	117990											
SCN1A	6323	broad.mit.edu	37	chr2	166900385	166900385	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcgtctctctccgtgtcGtcggggcacaaacaaggaat	12	11	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166900385	A	A	166900385	4	1	131	1	0	0	0	0	0	1	0	0	14027	1153	40	4	4256	4	SCN1A	2	166900385	Nonsense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	2434299	166900385	76298988	54	117991											
B3GALT1	8708	broad.mit.edu	37	chr2	168726189	168726189	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcattaatggaggaccgattCgggatgtccgcagtaagtgg	14	7	1	0	rs144099662	byFrequency;by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168726189	A	A	168726189	2	1	131	1	0	0	0	0	0	0	0	1	1252	875	31	3		3	B3GALT1	2	168726189	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	1825804	168726189	74473184	55	117992											
OLA1	29789	broad.mit.edu	37	chr2	174946518	174946518	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcttttcactctgtctcatGgtaaagaaaggagaagattc	8	7	4	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174946518	C	C	174946518	1	2	131	0	1	0	0	0	0	0	0	0	10945	1363	47	4		4	OLA1	2	174946518	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	6220329	174946518	68252855	56	117993											
PLEKHA3	65977	broad.mit.edu	37	chr2	179358664	179358664	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaatgcagcaagttcataCaatacaggaatttgttcacc	6	9	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179358664	T	T	179358664	3	4	131	1	0	0	0	0	1	0	0	0	12152	478	17	4	412	4	PLEKHA3	2	179358664	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	4412146	179358664	63840709	57	117994											
TTN	7273	broad.mit.edu	37	chr2	179432140	179432140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgtgttctttatttcaCatctagcagattcttcaatt	4	8	6	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179432140	A	A	179432140	3	1	131	1	0	0	0	0	1	0	0	0	16861	478	17	3	29408	3	TTN	2	179432140	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	73476	179432140	63767233	58	117995											
TTN	7273	broad.mit.edu	37	chr2	179614601	179614601	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattaaacattcaagaatgaTggaatccccttctctacacc	4	11	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179614601	A	A	179614601	3	1	131	1	0	0	0	0	1	0	0	0	16861	1464	51	5	97771	5	TTN	2	179614601	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	182461	179614601	63584772	59	117996											
AOX1	316	broad.mit.edu	37	chr2	201468820	201468820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttcctcctgagctaatGgtgagtaaagcaatgttgag	10	6	0	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201468820	T	T	201468820	3	4	131	1	0	0	0	0	1	0	0	0	731	1362	47	2	699	2	AOX1	2	201468820	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	21854219	201468820	41730553	60	117997											
DYTN	391475	broad.mit.edu	37	chr2	207564875	207564875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaaggcactcaccccttgGaaacagctgcgggtggcact	12	13	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207564875	T	T	207564875	3	4	131	1	0	0	0	0	1	0	0	0	4901	1165	41	3	1215	3	DYTN	2	207564875	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	6096055	207564875	35634498	61	117998											
DYTN	391475	broad.mit.edu	37	chr2	207583007	207583007	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttatctggatccatttcAcaaatttcctggaatgacag	7	8	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207583007	T	T	207583007	1	4	131	0	1	0	0	0	0	0	0	0	4901	174	6	5		5	DYTN	2	207583007	5'UTR	SNP	A	TCGA-44-6779-01A-11D-1855-08	18132	207583007	35616366	62	117999											
ABCA12	26154	broad.mit.edu	37	chr2	215848493	215848493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgctgcatacagactccCatgttcttccgtaccgtgtg	9	13	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215848493	A	A	215848493	3	1	131	1	0	0	0	0	1	0	0	0	30	594	21	2	3627	2	ABCA12	2	215848493	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	8265486	215848493	27350880	63	118000											
RBM44	375316	broad.mit.edu	37	chr2	238729761	238729761	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaattgggatcagcactacTgtctcttttgggggacttaa	12	7	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238729761	C	C	238729761	3	2	131	1	0	0	0	0	1	0	0	0	13246	1580	55	5	1982	5	RBM44	2	238729761	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	22881268	238729761	4469612	64	118001											
AGXT	189	broad.mit.edu	37	chr2	241812439	241812439	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcggtggcatccctgggcGggacccccctttacatggac	12	14	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241812439	A	A	241812439	3	1	131	1	0	0	0	0	1	0	0	0	404	1116	39	4	586	4	AGXT	2	241812439	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	3082678	241812439	1386934	65	118002											
DAZL	1618	broad.mit.edu	37	chr3	16646788	16646788	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcaccacttctggggctGctgtgaggtccgctggaacc	15	13	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16646788	A	A	16646788	1	1	131	0	1	0	0	0	0	0	0	0	4279	1334	46	4		4	DAZL	3	16646788	5'UTR	SNP	G	TCGA-44-6779-01A-11D-1855-08		16646788	181375642	66	118003											
CTNNB1	1499	broad.mit.edu	37	chr3	41268677	41268678	+	Intron	DEL	AT	-	-													aagattccttgactaacaagAtatatatatatatctttcta							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41268678	-	-	41268677	6	5	131	0	1	1	0	1	0	0	0	0	4050	348	12	0		0	CTNNB1	3	41268677	Intron	DEL	AT	TCGA-44-6779-01A-11D-1855-08	24621889	41268677	156753753	67	118004											
SLMAP	7871	broad.mit.edu	37	chr3	57846577	57846577	+	Intron	DEL	C	-	-													agaagttgaggtatttcaatCaaaaaaaaaatactaaatag					rs113521063		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57846577	-	-	57846577	6	5	131	0	1	1	0	1	0	0	0	0	14863	841	29	0		0	SLMAP	3	57846577	Intron	DEL	C	TCGA-44-6779-01A-11D-1855-08	16577900	57846577	140175853	68	118005											
MORC1	27136	broad.mit.edu	37	chr3	108746502	108746502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaggaaaaagattatacaCattttattgtgtaaaccact	6	6	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108746502	T	T	108746502	1	4	131	0	1	0	0	0	0	0	0	0	9795	493	17	4		4	MORC1	3	108746502	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	50899925	108746502	89275928	69	118006											
TF	7018	broad.mit.edu	37	chr3	133473595	133473595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcactagacagtcacCatcagcagacatgtgggatg	12	10	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133473595	A	A	133473595	1	1	131	0	1	0	0	0	0	0	0	0	15908	609	21	2		2	TF	3	133473595	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	24727093	133473595	64548835	70	118007											
CLSTN2	64084	broad.mit.edu	37	chr3	140265316	140265316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaggtgctgtttcctaCccagtcttcacagggcaaat	9	12	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140265316	A	A	140265316	1	1	131	0	1	0	0	0	0	0	0	0	3594	522	18	3		3	CLSTN2	3	140265316	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	6791721	140265316	57757114	71	118008											
SERPINI1	5274	broad.mit.edu	37	chr3	167508124	167508124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacatttcaccgtgtttGttctacaaataaacttatcc	4	10	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167508124	T	T	167508124	1	4	131	0	1	0	0	0	0	0	0	0	14231	1392	48	3		3	SERPINI1	3	167508124	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	27242808	167508124	30514306	72	118009											
LAMP3	27074	broad.mit.edu	37	chr3	182871967	182871967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgttttttgtagtcgctgGggtagttgttggaattttta	13	2	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182871967	T	T	182871967	3	4	131	1	0	0	0	0	1	0	0	0	8691	1232	43	2	1008	2	LAMP3	3	182871967	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	15363843	182871967	15150463	73	118010											
FGF12	2257	broad.mit.edu	37	chr3	191861713	191861713	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttattttcctctccttGggtggatttactggaaggaa	9	7	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191861713	T	T	191861713	1	4	131	0	1	0	0	0	0	0	0	0	5898	1363	47	2		2	FGF12	3	191861713	3'UTR	SNP	G	TCGA-44-6779-01A-11D-1855-08	8989746	191861713	6160717	74	118011											
C3orf59	151963	broad.mit.edu	37	chr3	192516153	192516153	+	3'UTR	DEL	A	-	-													atcagagtttaagaatcaggAaaaaaaaaagtcagctaaca							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	192516153	-	-	192516153	6	5	131	0	1	1	0	1	0	0	0	0	2259	261	9	0		0	C3orf59	3	192516153	3'UTR	DEL	A	TCGA-44-6779-01A-11D-1855-08	654440	192516153	5506277	75	118012											
ATP13A4	84239	broad.mit.edu	37	chr3	193272693	193272693	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcagctgactaaaagagtTaatgatcctccaggttaaaa	7	9	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193272693	A	A	193272693	1	1	131	0	1	0	0	0	0	0	0	0	1130	1769	61	5		5	ATP13A4	3	193272693	5'UTR	SNP	T	TCGA-44-6779-01A-11D-1855-08	756540	193272693	4749737	76	118013											
GAK	2580	broad.mit.edu	37	chr4	907492	907492	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttgtcagttcaatgctatGattttatttaacatatcagg	6	6	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	907492	A	A	907492	1	1	131	0	1	0	0	0	0	0	0	0	6257	1305	45	4		4	GAK	4	907492	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08		907492	190246784	77	118014											
HGFAC	3083	broad.mit.edu	37	chr4	3449367	3449367	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacgacctcggtgagctcCggcgtgtcgtggctgcactc	13	15	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3449367	T	T	3449367	1	4	131	0	1	0	0	0	0	0	0	0	7153	667	23	4		4	HGFAC	4	3449367	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2541875	3449367	187704909	78	118015											
BOD1L	259282	broad.mit.edu	37	chr4	13604663	13604663	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctcagaggcacaacagtCactgaacttaaggatggtga	10	10	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13604663	T	T	13604663	2	4	131	1	0	0	0	0	0	0	0	1	1489	813	29	4		4	BOD1L	4	13604663	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	10155296	13604663	177549613	79	118016											
SEPSECS	51091	broad.mit.edu	37	chr4	25158358	25158358	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaagtcttttcaaaagccact							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25158358	-	-	25158358	6	5	131	0	1	1	0	1	0	0	0	0	14171	957	33	0		0	SEPSECS	4	25158358	Intron	DEL	G	TCGA-44-6779-01A-11D-1855-08	11553695	25158358	165995918	80	118017											
SEPSECS	51091	broad.mit.edu	37	chr4	25160732	25160733	+	Intron	INS	-	A	A													ttctctggacacttgcccttINSaaaaaaaaaaaaaaacttat					rs34423002		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25160733	A	A	25160732	6	5	131	0	1	1	1	0	0	0	0	0	14171	1769	61	0		0	SEPSECS	4	25160732	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	2374	25160732	165993544	81	118018											
GABRA4	2557	broad.mit.edu	37	chr4	46976150	46976150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctggaaaatgtttgttGttctcctgaaaaaattaact	6	5	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46976150	T	T	46976150	1	4	131	0	1	0	0	0	0	0	0	0	6223	1392	48	3		3	GABRA4	4	46976150	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	21815418	46976150	144178126	82	118019											
FRYL	285527	broad.mit.edu	37	chr4	48512057	48512057	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcaaaccacttttcgcacAtggtaaaaagagactgacct	8	10	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48512057	T	T	48512057	1	4	131	0	1	0	0	0	0	0	0	0	6124	232	8	5		5	FRYL	4	48512057	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	1535907	48512057	142642219	83	118020											
LRRC66	339977	broad.mit.edu	37	chr4	52861066	52861067	+	Missense_Mutation	DNP	CC	AA	AA													gctcagagtgaacagagaccCctcatcagagtcacagtcac							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	52861067	AA	AA	52861066	3	1	131	1	0	0	0	0	1	0	0	0	9105	623	22	2	524	2	LRRC66	4	52861066	Missense_Mutation	DNP	CC	TCGA-44-6779-01A-11D-1855-08	4349009	52861066	138293210	84	118021											
EPHA5	2044	broad.mit.edu	37	chr4	66201731	66201731	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgactatttcatcaaacTtgggcctgctatttcgctct	7	10	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66201731	G	G	66201731	3	3	131	1	0	0	0	0	1	0	0	0	5212	1609	56	5	354	5	EPHA5	4	66201731	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	13340665	66201731	124952545	85	118022											
SDAD1	55153	broad.mit.edu	37	chr4	76878723	76878723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctcttctgggatttccCgggggcagcatcaagttctt	10	11	4	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76878723	A	A	76878723	3	1	131	1	0	0	0	0	1	0	0	0	14063	652	23	1	362	1	SDAD1	4	76878723	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	10676992	76878723	114275553	86	118023											
EMCN	51705	broad.mit.edu	37	chr4	101386442	101386442	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagatgaggctgccaaatGattgttctattgggtagaga	12	4	1	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101386442	T	T	101386442	1	4	131	0	1	0	0	0	0	0	0	0	5128	1305	45	3		3	EMCN	4	101386442	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	24507719	101386442	89767834	87	118024											
ANK2	287	broad.mit.edu	37	chr4	114290996	114290996	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccactttctcgcccacctgTaacaaagctacaaatcttcc	3	16	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114290996	C	C	114290996	1	2	131	0	1	0	0	0	0	0	0	0	621	1653	57	5		5	ANK2	4	114290996	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	12904554	114290996	76863280	88	118025											
ANP32C	23520	broad.mit.edu	37	chr4	165118439	165118439	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtcccagtaacagctgTcgagatatgtgagttgcagg	14	7	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118439	A	A	165118439	3	1	131	1	0	0	0	0	1	0	0	0	707	1667	58	5	282	5	ANP32C	4	165118439	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	50827443	165118439	26035837	89	118026											
TLL1	7092	broad.mit.edu	37	chr4	167021887	167021888	+	Intron	DNP	CC	AA	AA													ttgcttgttgtttttgttttCcttcagccaccagaagagat							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	167021888	AA	AA	167021887	1	1	131	0	1	0	0	0	0	0	0	0	16068	870	30	3		3	TLL1	4	167021887	Intron	DNP	CC	TCGA-44-6779-01A-11D-1855-08	1903448	167021887	24132389	90	118027											
DDX60L	91351	broad.mit.edu	37	chr4	169348574	169348574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttactgaggactctggcCatcattctactcgtgcacag	8	13	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169348574	A	A	169348574	1	1	131	0	1	0	0	0	0	0	0	0	4412	609	21	2		2	DDX60L	4	169348574	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2326687	169348574	21805702	91	118028											
MYO10	4651	broad.mit.edu	37	chr5	16699743	16699743	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaagcaagccacgaagatAcccagcatgtatcatcattg	7	11	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16699743	T	T	16699743	1	4	131	0	1	0	0	0	0	0	0	0	10156	406	14	5		5	MYO10	5	16699743	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08		16699743	164215517	92	118029											
RGS7BP	401190	broad.mit.edu	37	chr5	63803508	63803509	+	Intron	INS	-	A	A													tctgatgagaaatgtttggtINSaaaaaaaaaaaaactcactt					rs146741816		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63803509	A	A	63803508	6	5	131	0	1	1	1	0	0	0	0	0	13420	1653	57	0		0	RGS7BP	5	63803508	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	47103765	63803508	117111752	93	118030											
CWC27	10283	broad.mit.edu	37	chr5	64081463	64081463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcgtttaagaggaattgAttcttagtatttttaaacta	7	3	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64081463	G	G	64081463	1	3	131	0	1	0	0	0	0	0	0	0	4103	348	12	5		5	CWC27	5	64081463	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	277955	64081463	116833797	94	118031											
SNX24	28966	broad.mit.edu	37	chr5	122281813	122281813	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggaactgggtccccaaaGtcttggaacagcgacgacaa	11	10	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122281813	A	A	122281813	3	1	131	1	0	0	0	0	1	0	0	0	15009	1029	36	4	218	4	SNX24	5	122281813	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	58200350	122281813	58633447	95	118032											
KLHL3	26249	broad.mit.edu	37	chr5	136957874	136957874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaaattactcagagtccCagtgagttcatgaatccaag	7	10	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136957874	A	A	136957874	1	1	131	0	1	0	0	0	0	0	0	0	8454	609	21	2		2	KLHL3	5	136957874	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	14676061	136957874	43957386	96	118033											
NRG2	9542	broad.mit.edu	37	chr5	139232196	139232196	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactggggcccaaatgaactCtttcttgttggggacaggga	14	8	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139232196	A	A	139232196	1	1	131	0	1	0	0	0	0	0	0	0	10743	928	32	3		3	NRG2	5	139232196	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2274322	139232196	41683064	97	118034											
PCDHB7	56129	broad.mit.edu	37	chr5	140554370	140554370	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacaatggcgagcctccgCgctcggccaccgccacgctg	13	17	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140554370	T	T	140554370	3	4	131	1	0	0	0	0	1	0	0	0	11641	768	27	4	1956	4	PCDHB7	5	140554370	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	1322174	140554370	40360890	98	118035											
ABLIM3	22885	broad.mit.edu	37	chr5	148616889	148616889	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattcttcaatttgatcctaAtctgtttgtggtggaaactg	8	6	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148616889	G	G	148616889	1	3	131	0	1	0	0	0	0	0	0	0	96	116	4	5		5	ABLIM3	5	148616889	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	8062519	148616889	32298371	99	118036											
SLC36A2	153201	broad.mit.edu	37	chr5	150696301	150696302	+	3'UTR	INS	-	AA	AA													caagacagaaactccgtctcINSaaaaaaaaaaaaaaaaaaaa					rs33912867		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	150696302	AA	AA	150696301	6	5	131	0	1	1	1	0	0	0	0	0	14708	841	29	0		0	SLC36A2	5	150696301	3'UTR	INS	-	TCGA-44-6779-01A-11D-1855-08	2079412	150696301	30218959	100	118037											
HAVCR2	84868	broad.mit.edu	37	chr5	156533576	156533576	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagagatgagaacaatcagtAcctttaatatgatccacaga	7	8	1	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156533576	T	T	156533576	1	4	131	0	1	0	0	0	0	0	0	0	7040	406	14	5		5	HAVCR2	5	156533576	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	5837275	156533576	24381684	101	118038											
ADAM19	8728	broad.mit.edu	37	chr5	156957808	156957808	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccacctgcagcctcagggtCtcttacctaattcctcggca	8	16	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156957808	T	T	156957808	1	4	131	0	1	0	0	0	0	0	0	0	240	928	32	4		4	ADAM19	5	156957808	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	424232	156957808	23957452	102	118039											
LCP2	3937	broad.mit.edu	37	chr5	169677664	169677664	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcacggactctcaaagatCgctccatgaaggcatgcaga	10	12	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169677664	A	A	169677664	1	1	131	0	1	0	0	0	0	0	0	0	8764	899	31	3		3	LCP2	5	169677664	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	12719856	169677664	11237596	103	118040											
BNIP1	662	broad.mit.edu	37	chr5	172578550	172578550	+	Intron	DEL	T	-	-													tcttttctaaataactgtcaTttttttttttttttttagcc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	172578550	-	-	172578550	6	5	131	0	1	1	0	1	0	0	0	0	1482	1508	52	0		0	BNIP1	5	172578550	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	2900886	172578550	8336710	104	118041											
HIST1H3D	8351	broad.mit.edu	37	chr6	26199202	26199202	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttgtttagctcctcgtcGttgcggatggccagctgcag	12	11	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26199202	A	A	26199202	1	1	131	1	0	0	0	0	0	0	0	0	7225	1136	40	4		4	HIST1H3D	6	26199202	Translation_Start_Site	SNP	G	TCGA-44-6779-01A-11D-1855-08		26199202	144915865	105	118042											
BAT3	7917	broad.mit.edu	37	chr6	31619606	31619606	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccagaccagagtgtacCcgaaagactccctagcatta	8	13	0	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31619606	G	G	31619606	1	3	131	0	1	0	0	0	0	0	0	0	1327	638	22	4		4	BAT3	6	31619606	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	5420404	31619606	139495461	106	118043											
HLA-DPA1	3113	broad.mit.edu	37	chr6	33036399	33036400	+	Intron	INS	-	T	T													ctacaaatcctagggcctccINStctttacattcccaccttta					rs144832637	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33036400	T	T	33036399	6	5	131	0	1	1	1	0	0	0	0	0	7269	696	24	0		0	HLA-DPA1	6	33036399	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	1416793	33036399	138078668	107	118044											
KIF6	221458	broad.mit.edu	37	chr6	39325224	39325224	+	Intron	DEL	C	-	-													aagatgtttttgatgtaattCttttttttttttttttttga							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39325224	-	-	39325224	6	5	131	0	1	1	0	1	0	0	0	0	8378	928	32	0		0	KIF6	6	39325224	Intron	DEL	C	TCGA-44-6779-01A-11D-1855-08	6288825	39325224	131789843	108	118045											
CAPN11	11131	broad.mit.edu	37	chr6	44144256	44144256	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggaagaggcagtcccctgGagaggaaggaggtgccacat	17	8	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44144256	A	A	44144256	1	1	131	0	1	0	0	0	0	0	0	0	2650	1189	41	4		4	CAPN11	6	44144256	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	4819032	44144256	126970811	109	118046											
KLHL31	401265	broad.mit.edu	37	chr6	53518838	53518838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaagattaatttacttctAtgttagggctatttccctat	6	7	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53518838	G	G	53518838	1	3	131	0	1	0	0	0	0	0	0	0	8456	464	16	5		5	KLHL31	6	53518838	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	9374582	53518838	117596229	110	118047											
BAI3	577	broad.mit.edu	37	chr6	69640468	69640468	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagaatttggaatgatgggaGatcatacaattaaaagtcag	10	3	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69640468	T	T	69640468	3	4	131	1	0	0	0	0	1	0	0	0	1305	942	33	3	781	3	BAI3	6	69640468	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	16121630	69640468	101474599	111	118048											
LMBRD1	55788	broad.mit.edu	37	chr6	70411385	70411385	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggattactcaggttagctcCaaaaattatgaaaccagaat	7	7	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70411385	T	T	70411385	3	4	131	1	0	0	0	0	1	0	0	0	8916	603	21	4	613	4	LMBRD1	6	70411385	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	770917	70411385	100703682	112	118049											
COL12A1	1303	broad.mit.edu	37	chr6	75848105	75848105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactaatatagctgtagccCtattttttaaaaattaactt	3	6	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75848105	A	A	75848105	1	1	131	0	1	0	0	0	0	0	0	0	3701	696	24	2		2	COL12A1	6	75848105	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	5436720	75848105	95266962	113	118050											
SLC35A1	10559	broad.mit.edu	37	chr6	88210864	88210864	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatttattaattcattcTcttttttttaggtgacctac	4	7	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88210864	C	C	88210864	1	2	131	0	1	0	0	0	0	0	0	0	14684	1566	54	5		5	SLC35A1	6	88210864	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	12362759	88210864	82904203	114	118051											
GABRR1	2569	broad.mit.edu	37	chr6	89888768	89888768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcggggcggaggtaatccGctggtgcagggaagctgcaa	19	8	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89888768	T	T	89888768	3	4	131	1	0	0	0	0	1	0	0	0	6236	1078	38	3	282	3	GABRR1	6	89888768	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1677904	89888768	81226299	115	118052											
GABRR2	2570	broad.mit.edu	37	chr6	89979017	89979017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttccttacaatcaacCcaccattcactactgtggtg	4	13	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89979017	A	A	89979017	1	1	131	0	1	0	0	0	0	0	0	0	6237	638	22	2		2	GABRR2	6	89979017	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	90249	89979017	81136050	116	118053											
KIAA0776	23376	broad.mit.edu	37	chr6	97000342	97000342	+	Intron	DEL	T	-	-													atgataatgaatttgtgtgcTtttttttttttttagacaga							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97000342	-	-	97000342	6	5	131	0	1	1	0	1	0	0	0	0	8263	1624	56	0		0	KIAA0776	6	97000342	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	7021325	97000342	74114725	117	118054											
ZBTB24	9841	broad.mit.edu	37	chr6	109802316	109802316	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattgctaaaaagtgattgTacttaaagaccttgccacag	9	7	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109802316	C	C	109802316	3	2	131	1	0	0	0	0	1	0	0	0	17657	1638	57	5	1253	5	ZBTB24	6	109802316	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	12801974	109802316	61312751	118	118055											
DDO	8528	broad.mit.edu	37	chr6	110714107	110714107	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccatagtggtggactacAggcagcctctgtccatctcg	12	12	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110714107	T	T	110714107	2	4	131	1	0	0	0	0	0	0	0	1	4367	175	7	5		5	DDO	6	110714107	Silent	SNP	A	TCGA-44-6779-01A-11D-1855-08	911791	110714107	60400960	119	118056											
SYNE1	23345	broad.mit.edu	37	chr6	152770832	152770832	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacataccagaatgatcagaAtatgttttctattttgaatt	5	5	2	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152770832	G	G	152770832	1	3	131	0	1	0	0	0	0	0	0	0	15564	116	4	5		5	SYNE1	6	152770832	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	42056725	152770832	18344235	120	118057											
NUDT1	4521	broad.mit.edu	37	chr7	2289637	2289637	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacccccgtggagagcgacGgtgagtctcacagggcctgc	16	13	1	2	rs115556911	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2289637	A	A	2289637	3	1	131	1	0	0	0	0	1	0	0	0	10820	1130	39	4	377	4	NUDT1	7	2289637	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08		2289637	156849026	121	118058											
CHST12	55501	broad.mit.edu	37	chr7	2473023	2473023	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcgcgaccccttcgtgcGcctgatctccgccttccgca	10	19	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2473023	A	A	2473023	3	1	131	1	0	0	0	0	1	0	0	0	3431	1087	38	4	751	4	CHST12	7	2473023	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	183386	2473023	156665640	122	118059											
IGF2BP3	10643	broad.mit.edu	37	chr7	23381816	23381816	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgcttgaagctgcaacAgtaaaaaggccccttaattt	8	8	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23381816	T	T	23381816	1	4	131	0	1	0	0	0	0	0	0	0	7645	203	7	5		5	IGF2BP3	7	23381816	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	20908793	23381816	135756847	123	118060											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26240191	26240191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgatttcaaacccgttaCctccatcgcggactcagtcg	7	14	2	1	rs112694138		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26240191	A	A	26240191	1	1	131	0	1	0	0	0	0	0	0	0	7326	521	18	3		3	HNRNPA2B1	7	26240191	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2858375	26240191	132898472	124	118061											
PKD1L1	168507	broad.mit.edu	37	chr7	47894610	47894610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttatcccgaagtaataCaaatgtcgttttatttctcc	4	10	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47894610	A	A	47894610	3	1	131	1	0	0	0	0	1	0	0	0	12059	478	17	3	3932	3	PKD1L1	7	47894610	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	21654419	47894610	111244053	125	118062											
POM121L12	285877	broad.mit.edu	37	chr7	53103855	53103855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccgccccgcaggccgccCcgccgcccaggagctcctgg	13	22	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103855	A	A	53103855	3	1	131	1	0	0	0	0	1	0	0	0	12336	623	22	2	493	2	POM121L12	7	53103855	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	5209245	53103855	106034808	126	118063											
TYW1B	441250	broad.mit.edu	37	chr7	72178784	72178784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagtgagaaggacccagCtacataaggcacagatagag	11	8	0	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72178784	A	A	72178784	1	1	131	0	1	0	0	0	0	0	0	0	16945	812	28	3		3	TYW1B	7	72178784	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	19074929	72178784	86959879	127	118064											
SLC25A13	10165	broad.mit.edu	37	chr7	95838116	95838116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagccaccgtgcccggcCatacccttttaactttttaa	7	13	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95838116	A	A	95838116	1	1	131	0	1	0	0	0	0	0	0	0	14589	609	21	2		2	SLC25A13	7	95838116	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	23659332	95838116	63300547	128	118065											
KCND2	3751	broad.mit.edu	37	chr7	120385968	120385969	+	Frame_Shift_Ins	INS	-	A	A													cctgctgttcacgacgacacINSaaaaaaacttttcgcatccc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120385969	A	A	120385968	7	5	131	1	0	1	1	0	0	0	0	0	8089	477	17	0	1620	0	KCND2	7	120385968	Frame_Shift_Ins	INS	-	TCGA-44-6779-01A-11D-1855-08	24547852	120385968	38752695	129	118066											
PAX4	5078	broad.mit.edu	37	chr7	127255616	127255616	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagaggtatccacacaccAcctctcccactgccctgccc	6	20	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127255616	C	C	127255616	1	2	131	0	1	0	0	0	0	0	0	0	11575	174	6	5		5	PAX4	7	127255616	5'UTR	SNP	A	TCGA-44-6779-01A-11D-1855-08	6869648	127255616	31883047	130	118067											
STRA8	346673	broad.mit.edu	37	chr7	134925508	134925508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggggacatctccacggGgaaggagacgttttcacagg	16	8	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134925508	T	T	134925508	1	4	131	0	1	0	0	0	0	0	0	0	15441	1247	43	2		2	STRA8	7	134925508	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	7669892	134925508	24213155	131	118068											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138768512	138768512	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagttcacacaattgaaaaaGaaaaggcctttacctctggg	9	8	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138768512	A	A	138768512	1	1	131	0	1	0	0	0	0	0	0	0	17701	957	33	4		4	ZC3HAV1	7	138768512	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	3843004	138768512	20370151	132	118069											
KEL	3792	broad.mit.edu	37	chr7	142650765	142650765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgcccgcacaggtggCaggttcctcttatcctcctg	9	15	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142650765	A	A	142650765	1	1	131	0	1	0	0	0	0	0	0	0	8212	725	25	3		3	KEL	7	142650765	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	3882253	142650765	16487898	133	118070											
ACTR3B	57180	broad.mit.edu	37	chr7	152549330	152549330	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggagctcagcggcgggagGatcaaggtaggagccagagg	20	7	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152549330	A	A	152549330	2	1	131	1	0	0	0	0	0	0	0	1	213	1165	41	4		4	ACTR3B	7	152549330	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	9898565	152549330	6589333	134	118071											
CSMD1	64478	broad.mit.edu	37	chr8	3046573	3046573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgaaataaagtgctgtGggacagtgttgatttggcat	13	4	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3046573	T	T	3046573	1	4	131	0	1	0	0	0	0	0	0	0	3978	1363	47	2		2	CSMD1	8	3046573	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08		3046573	143317449	135	118072											
RP1L1	94137	broad.mit.edu	37	chr8	10470626	10470626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgccgaccaggtggaagcGgactttcatctccacggaca	11	14	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10470626	A	A	10470626	3	1	131	1	0	0	0	0	1	0	0	0	13644	1116	39	4	6224	4	RP1L1	8	10470626	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	7424053	10470626	135893396	136	118073											
ADAM28	10863	broad.mit.edu	37	chr8	24181281	24181281	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaaaatacaaaatataTtgaaaatgtttaaaatgata	4	1	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24181281	C	C	24181281	1	2	131	0	1	0	0	0	0	0	0	0	246	1508	52	5		5	ADAM28	8	24181281	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	13710655	24181281	122182741	137	118074											
PTK2B	2185	broad.mit.edu	37	chr8	27289032	27289032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccagccccaggcggggaGgtcgtcccctctctgctgcc	12	19	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27289032	A	A	27289032	1	1	131	0	1	0	0	0	0	0	0	0	12869	1015	35	4		4	PTK2B	8	27289032	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	3107751	27289032	119074990	138	118075											
CA2	760	broad.mit.edu	37	chr8	86386660	86386660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaggttagttgatgaccCaattcttttttttccctatt	6	7	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86386660	A	A	86386660	1	1	131	0	1	0	0	0	0	0	0	0	2542	609	21	2		2	CA2	8	86386660	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	59097628	86386660	59977362	139	118076											
SPAG1	6674	broad.mit.edu	37	chr8	101232722	101232724	+	Intron	DEL	CTT	-	-													actgtttttcccttcccctcCttcaagaacatgtcaaaata							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101232724	-	-	101232722	6	5	131	0	1	1	0	1	0	0	0	0	15091	696	24	0		0	SPAG1	8	101232722	Intron	DEL	CTT	TCGA-44-6779-01A-11D-1855-08	14846062	101232722	45131300	140	118077											
DCAF13	25879	broad.mit.edu	37	chr8	104439295	104439295	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttgaattagtaatgaaaAaaatcctcttaacctttttg	5	5	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104439295	T	T	104439295	1	4	131	0	1	0	0	0	0	0	0	0	4299	29	1	5		5	DCAF13	8	104439295	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	3206573	104439295	41924727	141	118078											
CSMD3	114788	broad.mit.edu	37	chr8	113694836	113694836	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcattgattggtattcCaggatcagggcattcattat	10	8	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113694836	A	A	113694836	4	1	131	1	0	0	0	0	0	1	0	0	3980	603	21	2	8835	2	CSMD3	8	113694836	Nonsense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	9255541	113694836	32669186	142	118079											
DSCC1	79075	broad.mit.edu	37	chr8	120856022	120856022	+	Intron	DEL	T	-	-													agttatatttaccaaagaacTtttttttttttaaggcaggg							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120856022	-	-	120856022	6	5	131	0	1	1	0	1	0	0	0	0	4810	1624	56	0		0	DSCC1	8	120856022	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	7161186	120856022	25508000	143	118080											
ADCY8	114	broad.mit.edu	37	chr8	131812891	131812891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgatgcttcctgtgcaCacatgtgggtacacacgtgc	12	11	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131812891	A	A	131812891	1	1	131	0	1	0	0	0	0	0	0	0	300	493	17	3		3	ADCY8	8	131812891	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	10956869	131812891	14551131	144	118081											
LRRC6	23639	broad.mit.edu	37	chr8	133623535	133623535	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatagcctacagggttctaCttacctttcctttgatcatt	5	10	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133623535	A	A	133623535	1	1	131	0	1	0	0	0	0	0	0	0	9103	580	20	3		3	LRRC6	8	133623535	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	1810644	133623535	12740487	145	118082											
RHPN1	114822	broad.mit.edu	37	chr8	144463542	144463542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccgtccccaggcaccgcCcagcatgggcagcttgggct	12	18	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144463542	T	T	144463542	1	4	131	0	1	0	0	0	0	0	0	0	13459	638	22	4		4	RHPN1	8	144463542	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	10840007	144463542	1900480	146	118083											
EPPK1	83481	broad.mit.edu	37	chr8	144940513	144940513	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagccggtgacggcgcgctcGgccgacagcagcttctcctg	14	15	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144940513	A	A	144940513	2	1	131	1	0	0	0	0	0	0	0	1	5232	1103	39	4		4	EPPK1	8	144940513	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	476971	144940513	1423509	147	118084											
PTPDC1	138639	broad.mit.edu	37	chr9	96859541	96859541	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaatcatcaaagagtgaTaaataaaataaataaaaatg	5	2	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96859541	G	G	96859541	1	3	131	0	1	0	0	0	0	0	0	0	12879	1421	49	5		5	PTPDC1	9	96859541	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08		96859541	44353890	148	118085											
LRSAM1	90678	broad.mit.edu	37	chr9	130263350	130263350	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccaggagcctcctgagtcTgtgaggccatccgctccccc	10	19	1	2	rs140336379		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130263350	C	C	130263350	2	2	131	1	0	0	0	0	0	0	0	1	9130	1567	55	5		5	LRSAM1	9	130263350	Silent	SNP	T	TCGA-44-6779-01A-11D-1855-08	33403809	130263350	10950081	149	118086											
CCBL1	883	broad.mit.edu	37	chr9	131605043	131605043	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagccctggcccaagttcaCgacgtcatgctcactggcca	10	15	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131605043	T	T	131605043	3	4	131	1	0	0	0	0	1	0	0	0	2758	536	19	4	1221	4	CCBL1	9	131605043	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	1341693	131605043	9608388	150	118087											
DBH	1621	broad.mit.edu	37	chr9	136517528	136517528	+	Intron	DEL	G	-	-													gggggagggagagccatccaGggcagggggagggtgcctgt							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136517528	-	-	136517528	6	5	131	0	1	1	0	1	0	0	0	0	4283	1015	35	0		0	DBH	9	136517528	Intron	DEL	G	TCGA-44-6779-01A-11D-1855-08	4912485	136517528	4695903	151	118088											
NMT2	9397	broad.mit.edu	37	chr10	15177527	15177529	+	Intron	DEL	TCC	-	-													caatacctaaacactaacaaTcctcctccaagcccagtcaa							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15177529	-	-	15177527	6	5	131	0	1	1	0	1	0	0	0	0	10599	1450	50	0		0	NMT2	10	15177527	Intron	DEL	TCC	TCGA-44-6779-01A-11D-1855-08		15177527	120357220	152	118089											
KIAA1217	56243	broad.mit.edu	37	chr10	24820812	24820812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggggggaaagtcgcccCctcctcctccgccacctcct	10	19	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24820812	A	A	24820812	3	1	131	1	0	0	0	0	1	0	0	0	8286	623	22	2	3194	2	KIAA1217	10	24820812	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	9643285	24820812	110713935	153	118090											
FAM21C	253725	broad.mit.edu	37	chr10	46254740	46254740	+	Intron	DEL	C	-	-													ttttctttttttcttccccaCcccccccccacccccgacaa							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46254740	-	-	46254740	6	5	131	0	1	1	0	1	0	0	0	0	5589	522	18	0		0	FAM21C	10	46254740	Intron	DEL	C	TCGA-44-6779-01A-11D-1855-08	21433928	46254740	89280007	154	118091											
CHAT	1103	broad.mit.edu	37	chr10	50830084	50830085	+	Intron	INS	-	AGA	AGA													aggggaggcagaagggagggINSagggagggaggaagccaggc					rs138783927	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGA	50830085	AGA	AGA	50830084	6	5	131	0	1	1	1	0	0	0	0	0	3344	1189	41	0		0	CHAT	10	50830084	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	4575344	50830084	84704663	155	118092											
HK1	3098	broad.mit.edu	37	chr10	71142250	71142250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccccataaggtattccCggcgtttccacaagactcta	7	15	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71142250	A	A	71142250	2	1	131	1	0	0	0	0	0	0	0	1	7257	643	23	1		1	HK1	10	71142250	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	20312166	71142250	64392497	156	118093											
COL13A1	1305	broad.mit.edu	37	chr10	71716763	71716763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcctttctccttgcagggcGaagatggcttaccagtccaa	9	12	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71716763	A	A	71716763	3	1	131	1	0	0	0	0	1	0	0	0	3702	1059	37	4	2270	4	COL13A1	10	71716763	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	574513	71716763	63817984	157	118094											
KIAA1274	27143	broad.mit.edu	37	chr10	72293713	72293713	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagctccgtgatgcccaCgggcctcccccagccctcgt	10	20	0	1	rs12764399	byFrequency;by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72293713	G	G	72293713	3	3	131	1	0	0	0	0	1	0	0	0	8290	535	19	4	932	4	KIAA1274	10	72293713	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	576950	72293713	63241034	158	118095											
PCGF5	84333	broad.mit.edu	37	chr10	93038129	93038129	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactatttgtttactcgtcaAcagattgcacagttaacggt	7	9	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93038129	T	T	93038129	1	4	131	0	1	0	0	0	0	0	0	0	11671	58	2	5		5	PCGF5	10	93038129	3'UTR	SNP	A	TCGA-44-6779-01A-11D-1855-08	20744416	93038129	42496618	159	118096											
TNKS2	80351	broad.mit.edu	37	chr10	93621998	93621998	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgaattgacaagacatAttgccttaactggatttttt	6	7	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93621998	T	T	93621998	1	4	131	0	1	0	0	0	0	0	0	0	16444	464	16	5		5	TNKS2	10	93621998	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	583869	93621998	41912749	160	118097											
PLCE1	51196	broad.mit.edu	37	chr10	96081830	96081830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaggtaaaagcctctcCcttcctcacctgagtccttt	6	15	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96081830	A	A	96081830	1	1	131	0	1	0	0	0	0	0	0	0	12129	638	22	2		2	PLCE1	10	96081830	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2459832	96081830	39452917	161	118098											
DNMBP	23268	broad.mit.edu	37	chr10	101731618	101731618	+	Intron	DEL	T	-	-													tttctttctttctttctttcTttttttttttttaagacagg							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101731618	-	-	101731618	6	5	131	0	1	1	0	1	0	0	0	0	4714	1624	56	0		0	DNMBP	10	101731618	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	5649788	101731618	33803129	162	118099											
PPRC1	23082	broad.mit.edu	37	chr10	103906777	103906777	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggcccagctgcccctcCgcccccatgcatagctgcct	9	20	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103906777	T	T	103906777	3	4	131	1	0	0	0	0	1	0	0	0	12511	652	23	4	4062	4	PPRC1	10	103906777	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	2175159	103906777	31627970	163	118100											
SORCS3	22986	broad.mit.edu	37	chr10	107022018	107022018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcctccccttatcccCcaggatttccagctgcccaa	4	19	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107022018	A	A	107022018	1	1	131	0	1	0	0	0	0	0	0	0	15046	638	22	2		2	SORCS3	10	107022018	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	3115241	107022018	28512729	164	118101											
PSMD13	5719	broad.mit.edu	37	chr11	237178	237178	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacgggccctgggccccggCgatagagggagacggagggg	21	10	0	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237178	G	G	237178	1	3	131	0	1	0	0	0	0	0	0	0	12802	783	27	4		4	PSMD13	11	237178	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08		237178	134769338	165	118102											
IFITM1	8519	broad.mit.edu	37	chr11	314373	314373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtgcgtatggccctggCggaaatccagggggtgccgg	19	9	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	314373	T	T	314373	1	4	131	0	1	0	0	0	0	0	0	0	7596	783	27	4		4	IFITM1	11	314373	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	77195	314373	134692143	166	118103											
MUC2	4583	broad.mit.edu	37	chr11	1091579	1091579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatgcttccttcagggcCcagatgtgaggctggcgggg	17	10	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1091579	A	A	1091579	1	1	131	0	1	0	0	0	0	0	0	0	10069	638	22	2		2	MUC2	11	1091579	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	777206	1091579	133914937	167	118104											
TH	7054	broad.mit.edu	37	chr11	2189322	2189322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggggcgcaccactcaccGggtggtccaagtccaggtca	14	13	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2189322	T	T	2189322	3	4	131	1	0	0	0	0	1	0	0	0	15961	1130	39	1	958	1	TH	11	2189322	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1097743	2189322	132817194	168	118105											
OR2AG2	338755	broad.mit.edu	37	chr11	6789746	6789746	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagggatgccaggatccagGatgtggccaccatgatccag	13	11	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6789746	C	C	6789746	3	2	131	1	0	0	0	0	1	0	0	0	11079	1174	41	4	511	4	OR2AG2	11	6789746	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	4600424	6789746	128216770	169	118106											
ZDHHC13	54503	broad.mit.edu	37	chr11	19184974	19184974	+	Frame_Shift_Del	DEL	G	-	-													tctgaagaagaaaagaaagtGgtgagatttcttcgttactg							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19184974	-	-	19184974	7	5	131	1	0	1	0	1	0	0	0	0	17729	1362	47	0	1275	0	ZDHHC13	11	19184974	Frame_Shift_Del	DEL	G	TCGA-44-6779-01A-11D-1855-08	12395228	19184974	115821542	170	118107											
METT5D1	196074	broad.mit.edu	37	chr11	28349811	28349811	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctagtgtctaacattctccAgacttttggcaaagtaattt	6	9	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28349811	G	G	28349811	1	3	131	0	1	0	0	0	0	0	0	0	9585	203	7	5		5	METT5D1	11	28349811	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	9164837	28349811	106656705	171	118108											
IMMP1L	196294	broad.mit.edu	37	chr11	31482158	31482158	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgtaaatttaatatatccAtgacagaaatttacctttgg	5	6	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31482158	T	T	31482158	1	4	131	0	1	0	0	0	0	0	0	0	7786	232	8	5		5	IMMP1L	11	31482158	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	3132347	31482158	103524358	172	118109											
C11orf41	25758	broad.mit.edu	37	chr11	33589604	33589604	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgccttctgagcctctgctcTgccttctgcatccacagtgc	8	16	4	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33589604	A	A	33589604	1	1	131	0	1	0	0	0	0	0	0	0	1652	1595	55	5		5	C11orf41	11	33589604	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	2107446	33589604	101416912	173	118110											
EXT2	2132	broad.mit.edu	37	chr11	44135768	44135768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtggcggcttttctacgtgGacttaccggcaaggctacga	14	10	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44135768	T	T	44135768	3	4	131	1	0	0	0	0	1	0	0	0	5367	1183	41	3	773	3	EXT2	11	44135768	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	10546164	44135768	90870748	174	118111											
PTPRJ	5795	broad.mit.edu	37	chr11	48153035	48153035	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccaattaattatgaatattCtttcctcttaataaaatatt	2	6	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48153035	G	G	48153035	1	3	131	0	1	0	0	0	0	0	0	0	12912	928	32	4		4	PTPRJ	11	48153035	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	4017267	48153035	86853481	175	118112											
MS4A2	2206	broad.mit.edu	37	chr11	59863194	59863194	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggccaaggtcttgttaagGggctactggaaaaatttcta	11	6	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59863194	A	A	59863194	1	1	131	0	1	0	0	0	0	0	0	0	9954	1247	43	4		4	MS4A2	11	59863194	3'UTR	SNP	G	TCGA-44-6779-01A-11D-1855-08	11710159	59863194	75143322	176	118113											
AHNAK	79026	broad.mit.edu	37	chr11	62284180	62284181	+	3'UTR	DEL	TA	-	-													acccaaggctgatgttttgtTatatatatatatatgtacac							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62284181	-	-	62284180	6	5	131	0	1	1	0	1	0	0	0	0	414	1769	61	0		0	AHNAK	11	62284180	3'UTR	DEL	TA	TCGA-44-6779-01A-11D-1855-08	2420986	62284180	72722336	177	118114											
CCDC88B	283234	broad.mit.edu	37	chr11	64117013	64117013	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggctgggtgctaaggattCtcctggcaggtaccagggct	17	9	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64117013	T	T	64117013	1	4	131	0	1	0	0	0	0	0	0	0	2892	928	32	4		4	CCDC88B	11	64117013	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	1832833	64117013	70889503	178	118115											
EHBP1L1	254102	broad.mit.edu	37	chr11	65359397	65359397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagagccagggtggaggcgGcacagccctgggcccgcgcc	17	15	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65359397	A	A	65359397	1	1	131	0	1	0	0	0	0	0	0	0	5016	1218	42	4		4	EHBP1L1	11	65359397	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	1242384	65359397	69647119	179	118116											
RELA	5970	broad.mit.edu	37	chr11	65427296	65427296	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaacaggcgatcaggagaGcaggggaagtggggatatag	18	4	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65427296	A	A	65427296	1	1	131	0	1	0	0	0	0	0	0	0	13324	986	34	4		4	RELA	11	65427296	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	67899	65427296	69579220	180	118117											
IGHMBP2	3508	broad.mit.edu	37	chr11	68675468	68675469	+	Intron	INS	-	T	T													gcccggcctaacttactttcINStttttttttttttaactgtt					rs34242855		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68675469	T	T	68675468	6	5	131	0	1	1	1	0	0	0	0	0	7661	928	32	0		0	IGHMBP2	11	68675468	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	3248172	68675468	66331048	181	118118											
JRKL	8690	broad.mit.edu	37	chr11	96125307	96125307	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctagaacaacaaggtgatatGattctacctgatagactggt	9	7	1	5			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96125307	T	T	96125307	3	4	131	1	0	0	0	0	1	0	0	0	8035	1290	45	3	1496	3	JRKL	11	96125307	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	27449839	96125307	38881209	182	118119											
CNTN5	53942	broad.mit.edu	37	chr11	99931800	99931800	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacaacccacgtggaaagtGaaatatatcaaccagcacat	7	10	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99931800	A	A	99931800	1	1	131	0	1	0	0	0	0	0	0	0	3676	1305	45	4		4	CNTN5	11	99931800	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	3806493	99931800	35074716	183	118120											
PGR	5241	broad.mit.edu	37	chr11	100962496	100962496	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacatcagaattacctccaAggaccatgccagcctgacag	7	13	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100962496	C	C	100962496	3	2	131	1	0	0	0	0	1	0	0	0	11900	72	3	5	924	5	PGR	11	100962496	Missense_Mutation	SNP	A	TCGA-44-6779-01A-11D-1855-08	1030696	100962496	34044020	184	118121											
AMICA1	120425	broad.mit.edu	37	chr11	118081271	118081271	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctctcccctttgaggcGgatttcacagatataggttc	10	11	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118081271	A	A	118081271	3	1	131	1	0	0	0	0	1	0	0	0	574	1116	39	4	857	4	AMICA1	11	118081271	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	17118775	118081271	16925245	185	118122											
ROBO4	54538	broad.mit.edu	37	chr11	124756661	124756661	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgaggctgttgggacgctGatgtacccataggtggtggg	17	7	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124756661	A	A	124756661	2	1	131	1	0	0	0	0	0	0	0	1	13627	1280	45	4		4	ROBO4	11	124756661	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	6675390	124756661	10249855	186	118123											
CACNA2D4	93589	broad.mit.edu	37	chr12	1950119	1950119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaattgaggcgagggtgGggacaggggttgtgtttgga	21	2	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1950119	T	T	1950119	1	4	131	0	1	0	0	0	0	0	0	0	2577	1247	43	2		2	CACNA2D4	12	1950119	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08		1950119	131901776	187	118124											
KCNA6	3742	broad.mit.edu	37	chr12	4920464	4920464	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctggtgggcagtggttacAatgaccacggtaggttacgg	15	7	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4920464	T	T	4920464	2	4	131	1	0	0	0	0	0	0	0	1	8077	117	5	5		5	KCNA6	12	4920464	Silent	SNP	A	TCGA-44-6779-01A-11D-1855-08	2970345	4920464	128931431	188	118125											
C1R	715	broad.mit.edu	37	chr12	7187784	7187785	+	3'UTR	INS	-	T	T													aactggtcagttgttttttgINStttttttttttccacactgc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7187785	T	T	7187784	6	5	131	0	1	1	1	0	0	0	0	0	1992	1392	48	0		0	C1R	12	7187784	3'UTR	INS	-	TCGA-44-6779-01A-11D-1855-08	2267320	7187784	126664111	189	118126											
CLEC4E	26253	broad.mit.edu	37	chr12	8692341	8692341	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatagggaaaaaaaaaagggTgaaatagaaagaccctttga	10	3	0	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8692341	G	G	8692341	1	3	131	0	1	0	0	0	0	0	0	0	3547	1711	59	5		5	CLEC4E	12	8692341	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	1504557	8692341	125159554	190	118127											
PRB3	5544	broad.mit.edu	37	chr12	11420396	11420396	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttctggctttcctggacGaggtgggggaccttgggact	15	10	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11420396	T	T	11420396	1	4	131	0	1	0	0	0	0	0	0	0	12550	1073	37	3		3	PRB3	12	11420396	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	2728055	11420396	122431499	191	118128											
RERG	85004	broad.mit.edu	37	chr12	15370324	15370325	+	Intron	DEL	CA	-	-													aataaagaaacacactcaccCacacacacacactataacaa							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15370325	-	-	15370324	6	5	131	0	1	1	0	1	0	0	0	0	13340	609	21	0		0	RERG	12	15370324	Intron	DEL	CA	TCGA-44-6779-01A-11D-1855-08	3949928	15370324	118481571	192	118129											
DIP2B	57609	broad.mit.edu	37	chr12	51065071	51065071	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgagtcctggatcaaccGttcaattcagggatcgtcca	10	11	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51065071	A	A	51065071	3	1	131	1	0	0	0	0	1	0	0	0	4568	1145	40	4	548	4	DIP2B	12	51065071	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	35694747	51065071	82786824	193	118130											
ATF1	466	broad.mit.edu	37	chr12	51203179	51203183	+	Intron	DEL	TTATT	-	-													aaaaaaaaaaaaaaaaaaaaTtatttttgtgaagtcattca					rs62928564		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51203183	-	-	51203179	6	5	131	0	1	1	0	1	0	0	0	0	1083	1508	52	0		0	ATF1	12	51203179	Intron	DEL	TTATT	TCGA-44-6779-01A-11D-1855-08	138108	51203179	82648716	194	118131											
OR10P1	121130	broad.mit.edu	37	chr12	56031203	56031203	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagccacccgatcatcccGcactttctctgtgacatcct	6	18	2	1	rs147317388	byFrequency	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56031203	T	T	56031203	2	4	131	1	0	0	0	0	0	0	0	1	11009	1074	38	3		3	OR10P1	12	56031203	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	4828024	56031203	77820692	195	118132											
ERBB3	2065	broad.mit.edu	37	chr12	56492212	56492212	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcaaaaaaaaaaaaaaaaGaatttgggacttggaaatcc	6	5	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56492212	A	A	56492212	1	1	131	0	1	0	0	0	0	0	0	0	5250	957	33	4		4	ERBB3	12	56492212	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	461009	56492212	77359683	196	118133											
DPY19L2	283417	broad.mit.edu	37	chr12	63976137	63976137	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacagtaactactaagtaTagctgctatagtttttatag	7	7	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63976137	C	C	63976137	1	2	131	0	1	0	0	0	0	0	0	0	4781	1421	49	5		5	DPY19L2	12	63976137	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	7483925	63976137	69875758	197	118134											
SRGAP1	57522	broad.mit.edu	37	chr12	64491003	64491003	+	Intron	DEL	T	-	-													agcactgttaatgtaatgagTtttttttttttttttaggtg							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64491003	-	-	64491003	6	5	131	0	1	1	0	1	0	0	0	0	15263	1740	60	0		0	SRGAP1	12	64491003	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	514866	64491003	69360892	198	118135											
TPH2	121278	broad.mit.edu	37	chr12	72338007	72338007	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accttgcttaagatgtgaacAagaaaagctcatggcattcc	8	9	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72338007	C	C	72338007	1	2	131	0	1	0	0	0	0	0	0	0	16526	145	5	5		5	TPH2	12	72338007	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	7847004	72338007	61513888	199	118136											
MYF6	4618	broad.mit.edu	37	chr12	81101444	81101444	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatctgggtggttcctctGggtttttgagtccatcaccc	11	12	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81101444	T	T	81101444	1	4	131	0	1	0	0	0	0	0	0	0	10122	1363	47	2		2	MYF6	12	81101444	5'Flank	SNP	G	TCGA-44-6779-01A-11D-1855-08	8763437	81101444	52750451	200	118137											
VEZT	55591	broad.mit.edu	37	chr12	95656581	95656585	+	Intron	DEL	AAAAT	-	-													tcttcttgaagtatcttctgAaaataaacaccaccaaattt					rs111271796		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95656585	-	-	95656581	6	5	131	0	1	1	0	1	0	0	0	0	17283	261	9	0		0	VEZT	12	95656581	Intron	DEL	AAAAT	TCGA-44-6779-01A-11D-1855-08	14555137	95656581	38195314	201	118138											
APAF1	317	broad.mit.edu	37	chr12	99059317	99059317	+	Intron	DEL	T	-	-													gtattagcatagtgacttcaTtttttttttaaaggctctcc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99059317	-	-	99059317	6	5	131	0	1	1	0	1	0	0	0	0	757	1508	52	0		0	APAF1	12	99059317	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	3402736	99059317	34792578	202	118139											
PTPN11	5781	broad.mit.edu	37	chr12	112915395	112915395	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctggggagtaactgatttGaactgttttttcctgaagca	12	6	0	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112915395	A	A	112915395	1	1	131	0	1	0	0	0	0	0	0	0	12886	1305	45	4		4	PTPN11	12	112915395	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	13856078	112915395	20936500	203	118140											
TPCN1	53373	broad.mit.edu	37	chr12	113710459	113710459	+	Intron	SNP	C	T	T													ttatctgtttccacccacttCtaggtttctacttgttctcc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113710459	T	T	113710459	1	4	131	0	1	0	0	0	0	0	0	0	16519	928	32	4		4	TPCN1	12	113710459	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	795064	113710459	20141436	204	118141	514	2	1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113710467	113710467	+	Silent	SNP	C	T	T													ttccacccacttctaggtttCtacttgttctcccctaaccc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113710467	T	T	113710467	2	4	131	1	0	0	0	0	0	0	0	1	16519	912	32	4		4	TPCN1	12	113710467	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	8	113710467	20141428	205	118142	514	2	1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113710675	113710675	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagacttgaccactttcttCcttgagagctggggatcccc	9	13	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113710675	T	T	113710675	1	4	131	0	1	0	0	0	0	0	0	0	16519	870	30	4		4	TPCN1	12	113710675	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	208	113710675	20141220	206	118143			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113710973	113710973	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccaggtggcccatcacagCctgttcctgatggccgtgtg	13	13	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113710973	T	T	113710973	1	4	131	0	1	0	0	0	0	0	0	0	16519	754	26	4		4	TPCN1	12	113710973	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	298	113710973	20140922	207	118144			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113711029	113711029	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttctctgccctctcttcCcttgcagtacttcagcaccc	5	18	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113711029	T	T	113711029	1	4	131	0	1	0	0	0	0	0	0	0	16519	638	22	4		4	TPCN1	12	113711029	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	56	113711029	20140866	208	118145			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113711154	113711154	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgccctggggtctctttctCttttctgccaagtatattcc	7	14	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113711154	T	T	113711154	1	4	131	0	1	0	0	0	0	0	0	0	16519	928	32	4		4	TPCN1	12	113711154	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	125	113711154	20140741	209	118146			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113715134	113715134	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggagcgctatcttaccttCaaggccctgaatcagaacaa	9	11	3	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113715134	T	T	113715134	2	4	131	1	0	0	0	0	0	0	0	1	16519	825	29	4		4	TPCN1	12	113715134	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	3980	113715134	20136761	210	118147			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113715147	113715147	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaccttcaaggccctgaatCagaacaacacacccctgctc	5	16	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113715147	T	T	113715147	4	4	131	1	0	0	0	0	0	1	0	0	16519	827	29	4	1424	4	TPCN1	12	113715147	Nonsense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	13	113715147	20136748	211	118148			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113715184	113715184	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcaggtaagagcagatgcCtggtaggggcagcatggcca	16	9	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113715184	T	T	113715184	1	4	131	0	1	0	0	0	0	0	0	0	16519	696	24	4		4	TPCN1	12	113715184	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	37	113715184	20136711	212	118149			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113715249	113715249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgggggcatgtgaaggccCttgaggtgggcaggcctata	17	8	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113715249	T	T	113715249	1	4	131	0	1	0	0	0	0	0	0	0	16519	696	24	4		4	TPCN1	12	113715249	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	65	113715249	20136646	213	118150			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113715290	113715290	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgtcagagacttcctcCacagatgtttatccatgtag	9	10	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113715290	T	T	113715290	1	4	131	0	1	0	0	0	0	0	0	0	16519	609	21	4		4	TPCN1	12	113715290	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	41	113715290	20136605	214	118151			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113715970	113715970	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actatgttctgatattttgtCcctttttattttgcttttgg	6	6	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113715970	T	T	113715970	1	4	131	0	1	0	0	0	0	0	0	0	16519	870	30	4		4	TPCN1	12	113715970	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	680	113715970	20135925	215	118152			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113717796	113717796	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accactctttgagcaggaccCtcctttcttcacctctgggg	8	15	4	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113717796	T	T	113717796	1	4	131	0	1	0	0	0	0	0	0	0	16519	696	24	4		4	TPCN1	12	113717796	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	1826	113717796	20134099	216	118153			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113717996	113717996	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaaggccttccagtatttCatgtgtaagtgtgaaatatc	8	8	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113717996	T	T	113717996	2	4	131	1	0	0	0	0	0	0	0	1	16519	825	29	4		4	TPCN1	12	113717996	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	200	113717996	20133899	217	118154			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113718056	113718056	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccctgagtcctttgctgttCtagaagcgggagaggcaaga	13	10	1	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113718056	T	T	113718056	1	4	131	0	1	0	0	0	0	0	0	0	16519	928	32	4		4	TPCN1	12	113718056	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	60	113718056	20133839	218	118155			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113722337	113722337	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagctgcgacctgcagatttCtaagcccccctgttatttct	7	14	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113722337	T	T	113722337	1	4	131	0	1	0	0	0	0	0	0	0	16519	928	32	4		4	TPCN1	12	113722337	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	4281	113722337	20129558	219	118156			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113728670	113728670	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctcatcttagcacatggCacccaggataggtggcaaga	10	12	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113728670	T	T	113728670	1	4	131	0	1	0	0	0	0	0	0	0	16519	725	25	4		4	TPCN1	12	113728670	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	6333	113728670	20123225	220	118157			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113728733	113728733	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggggtctcatcaggatgCttctttctctcttccctcgg	10	12	5	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113728733	T	T	113728733	1	4	131	0	1	0	0	0	0	0	0	0	16519	812	28	4		4	TPCN1	12	113728733	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	63	113728733	20123162	221	118158			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113728836	113728836	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctctgggggtatcttcCcgccagccctggggtcggcc	15	15	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113728836	T	T	113728836	1	4	131	0	1	0	0	0	0	0	0	0	16519	638	22	4		4	TPCN1	12	113728836	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	103	113728836	20123059	222	118159			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113729532	113729532	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttcgtcttccacatcacCagctgcccctgctcttcagc	5	19	4	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113729532	T	T	113729532	1	4	131	0	1	0	0	0	0	0	0	0	16519	609	21	4		4	TPCN1	12	113729532	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	696	113729532	20122363	223	118160			1	94		21	20	19383	N	C	9.142103e-31
TPCN1	53373	broad.mit.edu	37	chr12	113729841	113729841	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgtctgggtggctgtcCagccagccatcaggctgtca	13	12	4	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113729841	T	T	113729841	1	4	131	0	1	0	0	0	0	0	0	0	16519	609	21	4		4	TPCN1	12	113729841	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	309	113729841	20122054	224	118161			1	94		21	20	19383	N	C	9.142103e-31
XPO4	64328	broad.mit.edu	37	chr13	21374920	21374920	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgttcctgcttctatAactgctatcatcataaatcc	3	10	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21374920	T	T	21374920	1	4	131	0	1	0	0	0	0	0	0	0	17573	377	13	5		5	XPO4	13	21374920	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08		21374920	93794958	225	118162											
SLITRK5	26050	broad.mit.edu	37	chr13	88328297	88328297	+	Frame_Shift_Del	DEL	G	-	-													ctgaaacttctgccctacgtGgggctcttgcagcacatgga							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88328297	-	-	88328297	7	5	131	1	0	1	0	1	0	0	0	0	14860	1335	47	0	656	0	SLITRK5	13	88328297	Frame_Shift_Del	DEL	G	TCGA-44-6779-01A-11D-1855-08	66953377	88328297	26841581	226	118163											
SLITRK5	26050	broad.mit.edu	37	chr13	88328860	88328860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatcgctgaactgcagcCcaagccctacaatcccaaga	8	15	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88328860	T	T	88328860	3	4	131	1	0	0	0	0	1	0	0	0	14860	623	22	4	1219	4	SLITRK5	13	88328860	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	563	88328860	26841018	227	118164											
POTEG	404785	broad.mit.edu	37	chr14	19571463	19571463	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttggtttaacgtttttttTgtttttttttttttgcttta	5	2	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19571463	G	G	19571463	1	3	131	0	1	0	0	0	0	0	0	0	12362	1827	63	5		5	POTEG	14	19571463	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08		19571463	87778077	228	118165											
RALGAPA1	253959	broad.mit.edu	37	chr14	36218054	36218055	+	Intron	INS	-	G	G													aatacaaaaaaaaaaaaaaaINSagagagaaacaatatcataa					rs74042821		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36218055	G	G	36218054	6	5	131	0	1	1	1	0	0	0	0	0	13121	29	1	0		0	RALGAPA1	14	36218054	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	16646591	36218054	71131486	229	118166											
ABHD12B	145447	broad.mit.edu	37	chr14	51352570	51352570	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtggaccaaggcaagaagtGgcatcactcccgtgtgtctc	12	11	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51352570	C	C	51352570	3	2	131	1	0	0	0	0	1	0	0	0	77	1348	47	4	424	4	ABHD12B	14	51352570	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	15134516	51352570	55996970	230	118167											
NID2	22795	broad.mit.edu	37	chr14	52507564	52507564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccatgtcatgggtaaaggCagcacctggagatgaaaaac	11	8	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52507564	A	A	52507564	3	1	131	1	0	0	0	0	1	0	0	0	10510	710	25	3	2356	3	NID2	14	52507564	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	1154994	52507564	54841976	231	118168											
DCAF5	8816	broad.mit.edu	37	chr14	69520532	69520532	+	3'UTR	DEL	G	-	-													taaacaatttttttttttttGtaaggctacttttgtagctt							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69520532	-	-	69520532	6	5	131	0	1	1	0	1	0	0	0	0	4306	1392	48	0		0	DCAF5	14	69520532	3'UTR	DEL	G	TCGA-44-6779-01A-11D-1855-08	17012968	69520532	37829008	232	118169											
SEL1L	6400	broad.mit.edu	37	chr14	81953969	81953969	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatatatgaagaataaaactCtaatgaaagaattcttactg	5	4	2	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81953969	A	A	81953969	1	1	131	0	1	0	0	0	0	0	0	0	14123	928	32	3		3	SEL1L	14	81953969	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	12433437	81953969	25395571	233	118170											
KCNK10	54207	broad.mit.edu	37	chr14	88693778	88693778	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggttccaagttggtctcCaattccagccaataagaaac	8	10	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88693778	G	G	88693778	3	3	131	1	0	0	0	0	1	0	0	0	8129	603	21	4	1025	4	KCNK10	14	88693778	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	6739809	88693778	18655762	234	118171											
AK7	122481	broad.mit.edu	37	chr14	96954783	96954783	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttccagttcttagaaaattCtttttttgtagacaaatatt	4	5	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96954783	G	G	96954783	1	3	131	0	1	0	0	0	0	0	0	0	444	928	32	4		4	AK7	14	96954783	3'UTR	SNP	C	TCGA-44-6779-01A-11D-1855-08	8261005	96954783	10394757	235	118172											
JAG2	3714	broad.mit.edu	37	chr14	105609331	105609331	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccttgtggccccccggccGctcaatggggttgcggatgg	16	13	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105609331	A	A	105609331	3	1	131	1	0	0	0	0	1	0	0	0	8005	1086	38	4	302	4	JAG2	14	105609331	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	8654548	105609331	1740209	236	118173											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32915726	32915726	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttgcacatctttagaagaCcatattcataccgaagggct	8	10	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32915726	G	G	32915726	3	3	131	1	0	0	0	0	1	0	0	0	865	506	18	4	244	4	ARHGAP11A	15	32915726	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08		32915726	69615666	237	118174											
INO80	54617	broad.mit.edu	37	chr15	41364266	41364266	+	Intron	DEL	A	-	-													aatgaccttgtctggaaagtAaaaaaaaaaaaaattagaaa							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41364266	-	-	41364266	6	5	131	0	1	1	0	1	0	0	0	0	7816	377	13	0		0	INO80	15	41364266	Intron	DEL	A	TCGA-44-6779-01A-11D-1855-08	8448540	41364266	61167126	238	118175											
ZFP106	64397	broad.mit.edu	37	chr15	42717213	42717213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcattcaaagatctcaagtCgtttgttgttctggaaaata	9	6	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42717213	A	A	42717213	3	1	131	1	0	0	0	0	1	0	0	0	17763	884	31	3	739	3	ZFP106	15	42717213	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	1352947	42717213	59814179	239	118176											
TP53BP1	7158	broad.mit.edu	37	chr15	43720172	43720172	+	Intron	DEL	G	-	-													ctccaaaaaaaaaaaaaaaaGaaagaaagaaatttgccaca							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43720172	-	-	43720172	6	5	131	0	1	1	0	1	0	0	0	0	16507	957	33	0		0	TP53BP1	15	43720172	Intron	DEL	G	TCGA-44-6779-01A-11D-1855-08	1002959	43720172	58811220	240	118177											
STRC	161497	broad.mit.edu	37	chr15	43892287	43892287	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggtgagactagatagttGgatgggactaaacaccacct	11	8	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43892287	A	A	43892287	4	1	131	1	0	0	0	0	0	1	0	0	15446	1357	47	4	225	4	STRC	15	43892287	Nonsense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	172115	43892287	58639105	241	118178											
HDC	3067	broad.mit.edu	37	chr15	50534448	50534448	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcagactctggctgaagGccctgtgtctaaaccatggc	10	13	3	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50534448	A	A	50534448	1	1	131	0	1	0	0	0	0	0	0	0	7082	1218	42	4		4	HDC	15	50534448	3'UTR	SNP	G	TCGA-44-6779-01A-11D-1855-08	6642161	50534448	51996944	242	118179											
UNC13C	440279	broad.mit.edu	37	chr15	54793103	54793103	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctcagctgaatcagaGctttgaaattattaagaaac	7	7	2	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54793103	A	A	54793103	3	1	131	1	0	0	0	0	1	0	0	0	17112	971	34	4	5306	4	UNC13C	15	54793103	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	4258655	54793103	47738289	243	118180											
FOXB1	27023	broad.mit.edu	37	chr15	60297987	60297987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgcccgcgctgcctgcGctgccagcgcccatccccac	11	22	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60297987	T	T	60297987	2	4	131	1	0	0	0	0	0	0	0	1	6050	1074	38	3		3	FOXB1	15	60297987	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	5504884	60297987	42233405	244	118181											
ANXA2	302	broad.mit.edu	37	chr15	60643886	60643898	+	Intron	DEL	CTGATGTCTACCA	-	-													tgtcacttctgctctggtagCtgatgtctaccaggaatggg							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60643898	-	-	60643886	6	5	131	0	1	1	0	1	0	0	0	0	718	812	28	0		0	ANXA2	15	60643886	Intron	DEL	CTGATGTCTACCA	TCGA-44-6779-01A-11D-1855-08	345899	60643886	41887506	245	118182											
GOLGA6B	55889	broad.mit.edu	37	chr15	72954797	72954797	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgctccgagagcaggaggTgcagagagtgcgggagcagg	20	7	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72954797	C	C	72954797	3	2	131	1	0	0	0	0	1	0	0	0	6622	1696	59	5	1094	5	GOLGA6B	15	72954797	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	12310911	72954797	29576595	246	118183											
C15orf60	283677	broad.mit.edu	37	chr15	73766253	73766253	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcttcattttccaaggacaGacactactggtaggttttat	7	8	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73766253	A	A	73766253	2	1	131	1	0	0	0	0	0	0	0	1	1821	933	33	4		4	C15orf60	15	73766253	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	811456	73766253	28765139	247	118184											
SNUPN	10073	broad.mit.edu	37	chr15	75901825	75901825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgtgagccaccgcgccCggcccaaagtgggtctttaa	13	14	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75901825	A	A	75901825	1	1	131	0	1	0	0	0	0	0	0	0	14991	667	23	1		1	SNUPN	15	75901825	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2135572	75901825	26629567	248	118185											
CSPG4	1464	broad.mit.edu	37	chr15	75985532	75985532	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctatgtcggtcagagccGtggccacaggcacctccagg	14	13	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75985532	A	A	75985532	3	1	131	1	0	0	0	0	1	0	0	0	3994	1145	40	4	6873	4	CSPG4	15	75985532	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	83707	75985532	26545860	249	118186											
HDGFRP3	50810	broad.mit.edu	37	chr15	83819969	83819969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttataagcacatccttacccCttcactggttttctgcaagt	5	12	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83819969	A	A	83819969	3	1	131	1	0	0	0	0	1	0	0	0	7088	681	24	2	15	2	HDGFRP3	15	83819969	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	7834437	83819969	18711423	250	118187											
ANKS3	124401	broad.mit.edu	37	chr16	4751201	4751201	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagccttggtgaaacccccAcccgccacacaggggcttga	11	15	0	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4751201	C	C	4751201	1	2	131	0	1	0	0	0	0	0	0	0	690	174	6	5		5	ANKS3	16	4751201	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08		4751201	85603552	251	118188											
A2BP1	54715	broad.mit.edu	37	chr16	7645406	7645406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaattattgcacatctcaGtactcttataatttctctaa	2	9	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7645406	T	T	7645406	1	4	131	0	1	0	0	0	0	0	0	0	3	1044	36	3		3	A2BP1	16	7645406	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	2894205	7645406	82709347	252	118189											
USP7	7874	broad.mit.edu	37	chr16	8993490	8993490	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcattctatttgataacgTaaccacaaatccaggatcat	4	9	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8993490	A	A	8993490	3	1	131	1	0	0	0	0	1	0	0	0	17215	1638	57	5	914	5	USP7	16	8993490	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	1348084	8993490	81361263	253	118190											
RSL1D1	26156	broad.mit.edu	37	chr16	11931885	11931885	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttggggtctcagatgctGgcaaagcctttcttttcttc	9	10	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11931885	A	A	11931885	3	1	131	1	0	0	0	0	1	0	0	0	13811	1348	47	4	244	4	RSL1D1	16	11931885	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	2938395	11931885	78422868	254	118191											
SNX29	92017	broad.mit.edu	37	chr16	12571499	12571500	+	Intron	INS	-	G	G													ttgctgcagttggttttcatINSggggaaagcatagccgaaat							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12571500	G	G	12571499	6	5	131	0	1	1	1	0	0	0	0	0	15012	1479	51	0		0	SNX29	16	12571499	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	639614	12571499	77783254	255	118192											
BFAR	51283	broad.mit.edu	37	chr16	14738526	14738526	+	Intron	DEL	T	-	-													aaatgtggtttctctcttgcTtttttttttttttttttaac							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14738526	-	-	14738526	6	5	131	0	1	1	0	1	0	0	0	0	1420	1624	56	0		0	BFAR	16	14738526	Intron	DEL	T	TCGA-44-6779-01A-11D-1855-08	2167027	14738526	75616227	256	118193											
PDXDC1	23042	broad.mit.edu	37	chr16	15198524	15198524	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagttggaggaggtggctggTggcccatcctgttttttaaa	15	6	0	0	rs62039524		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15198524	C	C	15198524	1	2	131	0	1	0	0	0	0	0	0	0	11790	1711	59	5		5	PDXDC1	16	15198524	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	459998	15198524	75156229	257	118194											
ACSM2B	348158	broad.mit.edu	37	chr16	20557512	20557512	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgagtccttctggatGgtaagaatataaatcatttc	8	6	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20557512	C	C	20557512	1	2	131	0	1	0	0	0	0	0	0	0	184	1363	47	4		4	ACSM2B	16	20557512	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	5358988	20557512	69797241	258	118195											
ZP2	7783	broad.mit.edu	37	chr16	21211214	21211214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagctaggaggtatgcaCcagggagggatgtcagtcat	15	8	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21211214	A	A	21211214	1	1	131	0	1	0	0	0	0	0	0	0	18345	522	18	3		3	ZP2	16	21211214	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	653702	21211214	69143539	259	118196											
GGA2	23062	broad.mit.edu	37	chr16	23486188	23486188	+	Intron	DEL	A	-	-													agtctaatagattcccagggAaaaaaaaaaaaaggtgggga					rs66856380		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23486188	-	-	23486188	6	5	131	0	1	1	0	1	0	0	0	0	6417	261	9	0		0	GGA2	16	23486188	Intron	DEL	A	TCGA-44-6779-01A-11D-1855-08	2274974	23486188	66868565	260	118197											
LCMT1	51451	broad.mit.edu	37	chr16	25143446	25143446	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttagacgtttcaatgtaAaacacttatttttcatacat	3	7	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25143446	T	T	25143446	1	4	131	0	1	0	0	0	0	0	0	0	8750	29	1	5		5	LCMT1	16	25143446	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	1657258	25143446	65211307	261	118198											
PRSS36	146547	broad.mit.edu	37	chr16	31161493	31161493	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagcccatctctgggaaTctgagaggatctggggctgg	16	9	3	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31161493	A	A	31161493	1	1	131	0	1	0	0	0	0	0	0	0	12731	1450	50	5		5	PRSS36	16	31161493	5'Flank	SNP	T	TCGA-44-6779-01A-11D-1855-08	6018047	31161493	59193260	262	118199											
CCDC102A	92922	broad.mit.edu	37	chr16	57546617	57546617	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcctggaccctgggcaggTatggggcggcccatcctgcc	15	14	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57546617	G	G	57546617	1	3	131	0	1	0	0	0	0	0	0	0	2762	1653	57	5		5	CCDC102A	16	57546617	3'UTR	SNP	T	TCGA-44-6779-01A-11D-1855-08	26385124	57546617	32808136	263	118200											
CCDC113	29070	broad.mit.edu	37	chr16	58312467	58312467	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacaggtgatgacttacGtccgggagaagatcttaaat	10	9	1	4			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58312467	A	A	58312467	3	1	131	1	0	0	0	0	1	0	0	0	2776	1145	40	4	1003	4	CCDC113	16	58312467	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	765850	58312467	32042286	264	118201											
DPEP3	64180	broad.mit.edu	37	chr16	68012576	68012576	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggccagggcggtcttcaAccccctaggcctgccactcc	11	17	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68012576	C	C	68012576	1	2	131	0	1	0	0	0	0	0	0	0	4755	58	2	5		5	DPEP3	16	68012576	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	9700109	68012576	22342177	265	118202											
SF3B3	23450	broad.mit.edu	37	chr16	70599479	70599479	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagtcccattgaattctctCacttttgcttatgttatgga	6	8	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70599479	A	A	70599479	1	1	131	0	1	0	0	0	0	0	0	0	14265	841	29	3		3	SF3B3	16	70599479	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2586903	70599479	19755274	266	118203											
ATP2C2	9914	broad.mit.edu	37	chr16	84486767	84486767	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacatcggcctgtgcaacGggaagctgcaagccatgtcc	12	12	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84486767	A	A	84486767	3	1	131	1	0	0	0	0	1	0	0	0	1148	1116	39	4	1929	4	ATP2C2	16	84486767	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	13887288	84486767	5867986	267	118204											
TM4SF5	9032	broad.mit.edu	37	chr17	4675060	4675061	+	5'Flank	INS	-	C	C													ccgcctctgcctcctcagggINScccacatcctgtgcctctct							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4675061	C	C	4675060	6	5	131	0	1	1	1	0	0	0	0	0	16094	1218	42	0		0	TM4SF5	17	4675060	5'Flank	INS	-	TCGA-44-6779-01A-11D-1855-08		4675060	76520150	268	118205											
NUP88	4927	broad.mit.edu	37	chr17	5317415	5317415	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgctttagagtcagagaGgtggaactggtgaaaaatct	13	5	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5317415	A	A	5317415	2	1	131	1	0	0	0	0	0	0	0	1	10866	987	35	4		4	NUP88	17	5317415	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	642355	5317415	75877795	269	118206											
TP53	7157	broad.mit.edu	37	chr17	7578536	7578536	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccagttggcaaaacatctTgttgagggcaggggagtact	15	7	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578536	C	C	7578536	3	2	131	1	0	0	0	0	1	0	0	0	16505	1821	63	5	904	5	TP53	17	7578536	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08	2261121	7578536	73616674	270	118207											
CCL8	6355	broad.mit.edu	37	chr17	32646553	32646553	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcgcttctgtgcctgctGctcatggcagccactttcag	11	14	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32646553	T	T	32646553	2	4	131	1	0	0	0	0	0	0	0	1	2937	1306	46	3		3	CCL8	17	32646553	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	25068017	32646553	48548657	271	118208											
SPAG9	9043	broad.mit.edu	37	chr17	49048274	49048274	+	Intron	DEL	G	-	-													cacagaagggaggctgttttGttttttttttttaagtattt							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49048274	-	-	49048274	6	5	131	0	1	1	0	1	0	0	0	0	15101	1392	48	0		0	SPAG9	17	49048274	Intron	DEL	G	TCGA-44-6779-01A-11D-1855-08	16401721	49048274	32146936	272	118209											
CA10	56934	broad.mit.edu	37	chr17	50212178	50212178	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactgtgccctggcaccatgGatgtcactgccatcctccac	8	17	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50212178	A	A	50212178	1	1	131	0	1	0	0	0	0	0	0	0	2537	1189	41	4		4	CA10	17	50212178	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	1163904	50212178	30983032	273	118210											
AKAP1	8165	broad.mit.edu	37	chr17	55183490	55183490	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaagctctgttgtctcGggagcatgtcttggaattgg	14	6	3	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55183490	T	T	55183490	3	4	131	1	0	0	0	0	1	0	0	0	445	1116	39	1	667	1	AKAP1	17	55183490	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	4971312	55183490	26011720	274	118211											
FTSJ3	117246	broad.mit.edu	37	chr17	61898135	61898135	+	Intron	DEL	C	-	-													gcgagactccatctcaaaaaCaaaaaattacccatttaccc					rs2665836	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61898135	-	-	61898135	6	5	131	0	1	1	0	1	0	0	0	0	6149	493	17	0		0	FTSJ3	17	61898135	Intron	DEL	C	TCGA-44-6779-01A-11D-1855-08	6714645	61898135	19297075	275	118212											
KCTD2	23510	broad.mit.edu	37	chr17	73045381	73045381	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctatcctcaactacctcCgccacgggaaactcatcatc	5	17	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73045381	T	T	73045381	3	4	131	1	0	0	0	0	1	0	0	0	8177	652	23	4	412	4	KCTD2	17	73045381	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	11147246	73045381	8149829	276	118213											
NPLOC4	55666	broad.mit.edu	37	chr17	79580446	79580446	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccaaagactttgaagcccGgtggaactgacgtctccatt	10	12	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79580446	A	A	79580446	3	1	131	1	0	0	0	0	1	0	0	0	10681	1116	39	4	1598	4	NPLOC4	17	79580446	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	6535065	79580446	1614764	277	118214											
ZNF521	25925	broad.mit.edu	37	chr18	22804461	22804462	+	Missense_Mutation	DNP	AG	TA	TA													aaacttaacgttgcagctagAgcagcgtgtcttcagtcccc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	22804462	TA	TA	22804461	3	4	131	1	0	0	0	0	1	0	0	0	18092	304	11	5	534	5	ZNF521	18	22804461	Missense_Mutation	DNP	AG	TCGA-44-6779-01A-11D-1855-08		22804461	55272787	278	118215											
TCF4	6925	broad.mit.edu	37	chr18	52901847	52901847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaggaagctgtggaaccGgaacctggtttggcagaaga	16	7	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52901847	T	T	52901847	3	4	131	1	0	0	0	0	1	0	0	0	15817	1116	39	1	613	1	TCF4	18	52901847	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	30097386	52901847	25175401	279	118216											
STK11	6794	broad.mit.edu	37	chr19	1220685	1220685	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggacaccttctccggcttcAaggtggacatctggtcggct	12	12	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220685	T	T	1220685	4	4	131	1	0	0	0	0	0	1	0	0	15405	131	5	5	721	5	STK11	19	1220685	Nonsense_Mutation	SNP	A	TCGA-44-6779-01A-11D-1855-08		1220685	57908298	280	118217											
CD209	30835	broad.mit.edu	37	chr19	7810454	7810454	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtagatctcctgctgcttaGatttctctggaagctcaccc	9	12	3	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7810454	T	T	7810454	3	4	131	1	0	0	0	0	1	0	0	0	3014	942	33	3	532	3	CD209	19	7810454	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	6589769	7810454	51318529	281	118218											
COL5A3	50509	broad.mit.edu	37	chr19	10081540	10081541	+	Intron	INS	-	A	A													agaggtgaagcgggagcatcINStgcaggggccttgggtaccc					rs2287815		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10081541	A	A	10081540	6	5	131	0	1	1	1	0	0	0	0	0	3730	928	32	0		0	COL5A3	19	10081540	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	2271086	10081540	49047443	282	118219											
KEAP1	9817	broad.mit.edu	37	chr19	10610285	10610285	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcccatggagatggaggccGtgtaggcgaattcaatgagg	16	8	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610285	A	A	10610285	3	1	131	1	0	0	0	0	1	0	0	0	8211	1145	40	4	1469	4	KEAP1	19	10610285	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	528745	10610285	48518698	283	118220											
DHPS	1725	broad.mit.edu	37	chr19	12791237	12791237	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttcaccccaggccctgcAcattcagggatacaggacca	9	14	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12791237	C	C	12791237	1	2	131	0	1	0	0	0	0	0	0	0	4525	174	6	5		5	DHPS	19	12791237	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	2180952	12791237	46337746	284	118221											
JAK3	3718	broad.mit.edu	37	chr19	17954485	17954485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcctcatctgagaaatGggtagtgaccatacctccct	8	11	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17954485	T	T	17954485	1	4	131	0	1	0	0	0	0	0	0	0	8009	1363	47	2		2	JAK3	19	17954485	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	5163248	17954485	41174498	285	118222											
ZNF254	9534	broad.mit.edu	37	chr19	24310436	24310436	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattcatactgaagagaaacCctacaaatgtgaaaaatgtg	7	6	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24310436	G	G	24310436	3	3	131	1	0	0	0	0	1	0	0	0	17924	623	22	4	1648	4	ZNF254	19	24310436	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	6355951	24310436	34818547	286	118223											
ZNF536	9745	broad.mit.edu	37	chr19	30934762	30934762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggacaccagcctcaacgGgagggtggacttgcagcagt	16	10	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934762	T	T	30934762	3	4	131	1	0	0	0	0	1	0	0	0	18101	1232	43	2	295	2	ZNF536	19	30934762	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	6624326	30934762	28194221	287	118224											
TSHZ3	57616	broad.mit.edu	37	chr19	31769002	31769002	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggcgtgctcttccccgacGagcccagggacaacttcatc	12	15	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31769002	T	T	31769002	4	4	131	1	0	0	0	0	0	1	0	0	16750	1059	37	3	1552	3	TSHZ3	19	31769002	Nonsense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	834240	31769002	27359981	288	118225											
PEPD	5184	broad.mit.edu	37	chr19	33984175	33984175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccaagcactgccccacCcctggacaccagccacttac	7	19	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33984175	A	A	33984175	1	1	131	0	1	0	0	0	0	0	0	0	11822	638	22	2		2	PEPD	19	33984175	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	2215173	33984175	25144808	289	118226											
LSM14A	26065	broad.mit.edu	37	chr19	34712504	34712504	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgtggccgtgggggatacaGaggcagaggaggtcttggtt	19	7	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34712504	A	A	34712504	3	1	131	1	0	0	0	0	1	0	0	0	9141	942	33	4	1263	4	LSM14A	19	34712504	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	728329	34712504	24416479	290	118227											
ATP1A3	478	broad.mit.edu	37	chr19	42482025	42482025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggaggttggggggaagCggtccccctgtgtcaacacc	17	10	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42482025	A	A	42482025	1	1	131	0	1	0	0	0	0	0	0	0	1134	783	27	3		3	ATP1A3	19	42482025	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	7769521	42482025	16646958	291	118228											
IRGQ	126298	broad.mit.edu	37	chr19	44096008	44096008	+	3'UTR	DEL	A	-	-													cttcgtctcacaaaaaaaagAaaaaaaaaaaaaaaaatcag					rs150726789		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44096008	-	-	44096008	6	5	131	0	1	1	0	1	0	0	0	0	7909	261	9	0		0	IRGQ	19	44096008	3'UTR	DEL	A	TCGA-44-6779-01A-11D-1855-08	1613983	44096008	15032975	292	118229											
CD37	951	broad.mit.edu	37	chr19	49843570	49843570	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccacgtctacaaccggctCgctcgataccgttaggcccc	9	17	1	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49843570	A	A	49843570	2	1	131	1	0	0	0	0	0	0	0	1	3038	871	31	3		3	CD37	19	49843570	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	5747562	49843570	9285413	293	118230											
KLK7	5650	broad.mit.edu	37	chr19	51483661	51483661	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtgtggagtagccggGgtggcggaatgacttcgagg	20	6	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51483661	C	C	51483661	3	2	131	1	0	0	0	0	1	0	0	0	8480	1232	43	4	469	4	KLK7	19	51483661	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1640091	51483661	7645322	294	118231											
KLK10	5655	broad.mit.edu	37	chr19	51518734	51518734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttggtgaccacgccaGggtagaagacctcacactct	11	11	2	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51518734	T	T	51518734	3	4	131	1	0	0	0	0	1	0	0	0	8469	1000	35	2	221	2	KLK10	19	51518734	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	35073	51518734	7610249	295	118232											
ZNF600	162966	broad.mit.edu	37	chr19	53277711	53277712	+	Intron	INS	-	A	A													aacaaaacaaaaaaacaaccINSaaaaaaaaaaaaaaagccat					rs35098902		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53277712	A	A	53277711	6	5	131	0	1	1	1	0	0	0	0	0	18157	609	21	0		0	ZNF600	19	53277711	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	1758977	53277711	5851272	296	118233											
LAIR1	3903	broad.mit.edu	37	chr19	54870255	54870255	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaggacaaaatacttcctCagtattaataggagcatccc	8	9	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54870255	A	A	54870255	1	1	131	0	1	0	0	0	0	0	0	0	8674	841	29	3		3	LAIR1	19	54870255	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	1592544	54870255	4258728	297	118234											
KIR3DL1	3811	broad.mit.edu	37	chr19	55340832	55340832	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtaaccccagacacctGcacattctgattgggacctc	8	15	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55340832	A	A	55340832	2	1	131	1	0	0	0	0	0	0	0	1	8391	1306	46	4		4	KIR3DL1	19	55340832	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	470577	55340832	3788151	298	118235											
NLRP8	126205	broad.mit.edu	37	chr19	56463813	56463813	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaagccatgtggctgctTctgtcctaaaaaggccattg	10	10	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56463813	A	A	56463813	1	1	131	0	1	0	0	0	0	0	0	0	10578	1798	62	5		5	NLRP8	19	56463813	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	1122981	56463813	2665170	299	118236											
ZNF835	90485	broad.mit.edu	37	chr19	57176832	57176832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactggctgccagggacaCtacccctcaacccctgagtt	8	17	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57176832	A	A	57176832	1	1	131	0	1	0	0	0	0	0	0	0	18315	580	20	3		3	ZNF835	19	57176832	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	713019	57176832	1952151	300	118237											
PLCB1	23236	broad.mit.edu	37	chr20	8626924	8626924	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttatgccatactgacttcTcacattgataaacacaaatt	4	9	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8626924	A	A	8626924	1	1	131	0	1	0	0	0	0	0	0	0	12122	1566	54	5		5	PLCB1	20	8626924	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08		8626924	54398596	301	118238											
MACROD2	140733	broad.mit.edu	37	chr20	15480556	15480556	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgatgctcagttccccccAaaaaagcacataaattttat	4	10	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15480556	C	C	15480556	1	2	131	0	1	0	0	0	0	0	0	0	9234	145	5	5		5	MACROD2	20	15480556	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	6853632	15480556	47544964	302	118239											
MMP9	4318	broad.mit.edu	37	chr20	44642008	44642031	+	In_Frame_Del	DEL	CAGCTGGCCCCACAGGTCCCCCCT	-	-													ccacccctcagagcgccccaCagctggccccacaggtcccc							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44642031	-	-	44642008	7	5	131	1	0	1	0	1	0	0	0	0	9763	478	17	0	1479	0	MMP9	20	44642008	In_Frame_Del	DEL	CAGCTGGCCCCACAGGTCCCCCCT	TCGA-44-6779-01A-11D-1855-08	29161452	44642008	18383512	303	118240											
PARD6B	84612	broad.mit.edu	37	chr20	49366455	49366455	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagtgtcagggtaacaccAcatggcttagaaaaggttcc	10	10	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49366455	G	G	49366455	2	3	131	1	0	0	0	0	0	0	0	1	11540	146	6	5		5	PARD6B	20	49366455	Silent	SNP	A	TCGA-44-6779-01A-11D-1855-08	4724447	49366455	13659065	304	118241											
DIDO1	11083	broad.mit.edu	37	chr20	61541330	61541330	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaatgcccacacaatcGccatgaaaccattcttcaca	4	14	3	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61541330	A	A	61541330	2	1	131	1	0	0	0	0	0	0	0	1	4562	1074	38	4		4	DIDO1	20	61541330	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	12174875	61541330	1484190	305	118242											
COL20A1	57642	broad.mit.edu	37	chr20	61938806	61938806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttggaccagggatgggCctcacctagcacctgacccg	13	15	1	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61938806	A	A	61938806	1	1	131	0	1	0	0	0	0	0	0	0	3711	754	26	3		3	COL20A1	20	61938806	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	397476	61938806	1086714	306	118243											
RBM11	54033	broad.mit.edu	37	chr21	15596757	15596757	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctttcatctcctcaaAggaatgaagaaatgttggtg	8	7	5	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15596757	C	C	15596757	5	2	131	1	0	0	0	0	0	0	1	0	13220	86	3	5	345	5	RBM11	21	15596757	Splice_Site	SNP	A	TCGA-44-6779-01A-11D-1855-08		15596757	32533138	307	118244											
ZNF74	7625	broad.mit.edu	37	chr22	20760447	20760447	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaaccagcgtacacaccTcacacgccaccaccgcatcc	4	21	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20760447	C	C	20760447	3	2	131	1	0	0	0	0	1	0	0	0	18256	1551	54	5	1142	5	ZNF74	22	20760447	Missense_Mutation	SNP	T	TCGA-44-6779-01A-11D-1855-08		20760447	30544119	308	118245											
MN1	4330	broad.mit.edu	37	chr22	28194109	28194109	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctgggcttgttgaaggagCccagcgagagcgcgcccaat	15	11	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28194109	G	G	28194109	3	3	131	1	0	0	0	0	1	0	0	0	9767	739	26	4	1547	4	MN1	22	28194109	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	7433662	28194109	23110457	309	118246											
MEI1	150365	broad.mit.edu	37	chr22	42190313	42190313	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttaagccaataggagaaggtCctcttgagcaatgtcccaag	10	9	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42190313	T	T	42190313	1	4	131	0	1	0	0	0	0	0	0	0	9558	870	30	4		4	MEI1	22	42190313	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	13996204	42190313	9114253	310	118247											
NLGN4X	57502	broad.mit.edu	37	chrX	5821243	5821243	+	Silent	SNP	C	T	T													atgccgaagacataggggacCtcatcaccatgggccgaatc					rs9785605		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5821243	T	T	5821243	2	4	131	1	0	0	0	0	0	0	0	1	10559	680	24	4		4	NLGN4X	23	5821243	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08		5821243	149449317	311	118248	515	2									
NLGN4X	57502	broad.mit.edu	37	chrX	5821249	5821249	+	Silent	SNP	A	G	G													aagacataggggacctcatcAccatgggccgaatctgccca					rs9785509		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5821249	G	G	5821249	2	3	131	1	0	0	0	0	0	0	0	1	10559	146	6	5		5	NLGN4X	23	5821249	Silent	SNP	A	TCGA-44-6779-01A-11D-1855-08	6	5821249	149449311	312	118249	515	2									
GLRA2	2742	broad.mit.edu	37	chrX	14708814	14708815	+	Intron	DEL	TC	-	-													tctctctgtgtgtgtgtgtgTctctctctctctctcaggtc					rs113205021		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14708815	-	-	14708814	6	5	131	0	1	1	0	1	0	0	0	0	6519	1682	58	0		0	GLRA2	23	14708814	Intron	DEL	TC	TCGA-44-6779-01A-11D-1855-08	8887565	14708814	140561746	313	118250											
POLA1	5422	broad.mit.edu	37	chrX	24906176	24906176	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgaactcgtcaccttccCcttcaattctcccgaactgg	5	16	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24906176	A	A	24906176	2	1	131	1	0	0	0	0	0	0	0	1	12282	610	22	2		2	POLA1	23	24906176	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	10197362	24906176	130364384	314	118251											
MAGEB6	158809	broad.mit.edu	37	chrX	26211971	26211971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccacagccatcatgcctcGgggtcacaagagtaagctcc	11	14	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26211971	T	T	26211971	3	4	131	1	0	0	0	0	1	0	0	0	9271	1116	39	1	10	1	MAGEB6	23	26211971	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1305795	26211971	129058589	315	118252											
GAGE2A	729447	broad.mit.edu	37	chrX	49208295	49208296	+	Intron	INS	-	TAT	TAT													gttggcgaggaagatcgaccINStatcggcctagaccaagacg							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TAT	49208296	TAT	TAT	49208295	6	5	131	0	1	1	1	0	0	0	0	0	6251	668	24	0		0	GAGE2A	23	49208295	Intron	INS	-	TCGA-44-6779-01A-11D-1855-08	22996324	49208295	106062265	316	118253											
AR	367	broad.mit.edu	37	chrX	66863200	66863200	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttctgggtgtcactatggAgctctcacatgtggaagctg	13	9	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66863200	T	T	66863200	2	4	131	1	0	0	0	0	0	0	0	1	838	291	11	5		5	AR	23	66863200	Silent	SNP	A	TCGA-44-6779-01A-11D-1855-08	17654905	66863200	88407360	317	118254											
MED12	9968	broad.mit.edu	37	chrX	70354597	70354597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgttggacatgctgagcGtgctcatcaatgggacattg	13	8	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70354597	A	A	70354597	3	1	131	1	0	0	0	0	1	0	0	0	9521	1145	40	4	4900	4	MED12	23	70354597	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	3491397	70354597	84915963	318	118255											
COX7B	1349	broad.mit.edu	37	chrX	77155038	77155038	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtattgccgcagttctagCttcaccttcacgatgtttcc	7	13	3	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77155038	T	T	77155038	1	4	131	0	1	0	0	0	0	0	0	0	3814	812	28	4		4	COX7B	23	77155038	5'UTR	SNP	C	TCGA-44-6779-01A-11D-1855-08	6800441	77155038	78115522	319	118256											
ATP7A	538	broad.mit.edu	37	chrX	77286941	77286941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactggaaccattactcacgGaaccccagtggtgaatcaag	10	11	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77286941	T	T	77286941	3	4	131	1	0	0	0	0	1	0	0	0	1194	1174	41	3	3213	3	ATP7A	23	77286941	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	131903	77286941	77983619	320	118257											
DACH2	117154	broad.mit.edu	37	chrX	85949915	85949915	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagttaactgtgttcaataAtaatttcctaagaggtagta	8	4	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85949915	C	C	85949915	1	2	131	0	1	0	0	0	0	0	0	0	4254	116	4	5		5	DACH2	23	85949915	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	8662974	85949915	69320645	321	118258											
ARMCX3	51566	broad.mit.edu	37	chrX	100880216	100880216	+	Frame_Shift_Del	DEL	G	-	-													acccaccttgggctcggattGggactgaagctggaaccaga							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100880216	-	-	100880216	7	5	131	1	0	1	0	1	0	0	0	0	965	1348	47	0	249	0	ARMCX3	23	100880216	Frame_Shift_Del	DEL	G	TCGA-44-6779-01A-11D-1855-08	14930301	100880216	54390344	322	118259											
GPRASP2	114928	broad.mit.edu	37	chrX	101969872	101969872	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagaggttatcgctggGcctgagagagagaatgatgt	18	4	0	5			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101969872	A	A	101969872	2	1	131	1	0	0	0	0	0	0	0	1	6789	1190	42	4		4	GPRASP2	23	101969872	Silent	SNP	G	TCGA-44-6779-01A-11D-1855-08	1089656	101969872	53300688	323	118260											
PLP1	5354	broad.mit.edu	37	chrX	103044228	103044228	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcatattactgctgttgcAagaaacagttcttcctcttt	7	9	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103044228	T	T	103044228	1	4	131	0	1	0	0	0	0	0	0	0	12199	145	5	5		5	PLP1	23	103044228	Intron	SNP	A	TCGA-44-6779-01A-11D-1855-08	1074356	103044228	52226332	324	118261											
PLP1	5354	broad.mit.edu	37	chrX	103045419	103045419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagggagtgctttcttttcTactctcattcacattctctc	7	11	5	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103045419	C	C	103045419	1	2	131	0	1	0	0	0	0	0	0	0	12199	1537	53	5		5	PLP1	23	103045419	Intron	SNP	T	TCGA-44-6779-01A-11D-1855-08	1191	103045419	52225141	325	118262											
TMSB15B	286527	broad.mit.edu	37	chrX	103216789	103216789	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgagaggcccctgaatcgtCccgggaattttcttcggtga	12	10	1	3			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103216789	A	A	103216789	1	1	131	0	1	0	0	0	0	0	0	0	16379	870	30	3		3	TMSB15B	23	103216789	5'Flank	SNP	C	TCGA-44-6779-01A-11D-1855-08	171370	103216789	52053771	326	118263											
NUP62CL	54830	broad.mit.edu	37	chrX	106396371	106396371	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaatacgtaagtcctgcCccattcttcaatcttttttc	4	12	4	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106396371	A	A	106396371	1	1	131	0	1	0	0	0	0	0	0	0	10864	638	22	2		2	NUP62CL	23	106396371	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	3179582	106396371	48874189	327	118264											
AMOT	154796	broad.mit.edu	37	chrX	112054471	112054471	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagacaagtctgttggttcCctcacctctcagatccctgt	7	13	3	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112054471	T	T	112054471	1	4	131	0	1	0	0	0	0	0	0	0	582	638	22	4		4	AMOT	23	112054471	Intron	SNP	C	TCGA-44-6779-01A-11D-1855-08	5658100	112054471	43216089	328	118265											
HTR2C	3358	broad.mit.edu	37	chrX	113965913	113965913	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggcagtaagcatggaaaaGaaactgcacaatgccaccaa	9	9	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113965913	T	T	113965913	3	4	131	1	0	0	0	0	1	0	0	0	7513	933	33	3	252	3	HTR2C	23	113965913	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	1911442	113965913	41304647	329	118266											
RNF113A	7737	broad.mit.edu	37	chrX	119005016	119005016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcacggtggcacgtagatgCtcgggcgctcggatggggcc	18	12	0	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119005016	A	A	119005016	3	1	131	1	0	0	0	0	1	0	0	0	13538	796	28	3	474	3	RNF113A	23	119005016	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	5039103	119005016	36265544	330	118267											
XPNPEP2	7512	broad.mit.edu	37	chrX	128879333	128879333	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctagtgtctcagcatctggGaccccagaacctactgtaga	10	12	2	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128879333	T	T	128879333	1	4	131	0	1	0	0	0	0	0	0	0	17570	1189	41	3		3	XPNPEP2	23	128879333	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	9874317	128879333	26391227	331	118268											
SLITRK2	84631	broad.mit.edu	37	chrX	144904436	144904436	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagctcaaagtgctcatcCtgaatgacaaccttctgctt	6	12	3	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144904436	T	T	144904436	2	4	131	1	0	0	0	0	0	0	0	1	14857	680	24	4		4	SLITRK2	23	144904436	Silent	SNP	C	TCGA-44-6779-01A-11D-1855-08	16025103	144904436	10366124	332	118269											
AFF2	2334	broad.mit.edu	37	chrX	147919118	147919118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtttagtgctaagaaagGgcttgattttttaattgccc	9	6	0	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147919118	T	T	147919118	1	4	131	0	1	0	0	0	0	0	0	0	357	1247	43	2		2	AFF2	23	147919118	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	3014682	147919118	7351442	333	118270											
AFF2	2334	broad.mit.edu	37	chrX	147924509	147924509	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaatcgcagcatctgacccCaggattcaccttacaaagta	8	12	2	1			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147924509	T	T	147924509	3	4	131	1	0	0	0	0	1	0	0	0	357	594	21	4	1270	4	AFF2	23	147924509	Missense_Mutation	SNP	C	TCGA-44-6779-01A-11D-1855-08	5391	147924509	7346051	334	118271											
GABRA3	2556	broad.mit.edu	37	chrX	151393197	151393197	+	Intron	DEL	A	-	-													tttcttttggaagatcaggcAaaaaaaaaagacagagagag							TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151393197	-	-	151393197	6	5	131	0	1	1	0	1	0	0	0	0	6222	145	5	0		0	GABRA3	23	151393197	Intron	DEL	A	TCGA-44-6779-01A-11D-1855-08	3468688	151393197	3877363	335	118272											
ABCD1	215	broad.mit.edu	37	chrX	153006227	153006227	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaccctggcctctcccttGgcctccagggagtgaagatt	10	16	1	2			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153006227	C	C	153006227	1	2	131	0	1	0	0	0	0	0	0	0	60	1363	47	4		4	ABCD1	23	153006227	Intron	SNP	G	TCGA-44-6779-01A-11D-1855-08	1613030	153006227	2264333	336	118273											
HCFC1	3054	broad.mit.edu	37	chrX	153214721	153214721	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgaatgctgggacggggTgggaggggtgggccctggcg	24	7	0	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153214721	G	G	153214721	1	3	131	0	1	0	0	0	0	0	0	0	7057	1711	59	5		5	HCFC1	23	153214721	3'UTR	SNP	T	TCGA-44-6779-01A-11D-1855-08	208494	153214721	2055839	337	118274											
PLXNA3	55558	broad.mit.edu	37	chrX	153696766	153696766	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctccatgcgcgaccgcGgcaccgtggcctcgctcacc	11	19	2	0			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153696766	A	A	153696766	3	1	131	1	0	0	0	0	1	0	0	0	12216	1116	39	4	4170	4	PLXNA3	23	153696766	Missense_Mutation	SNP	G	TCGA-44-6779-01A-11D-1855-08	482045	153696766	1573794	338	118275											
CHD5	26038	broad.mit.edu	37	chr1	6166855	6166855	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggactgtggtgggaggcgGagggatggtaggatgcaggg	23	4	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6166855	C	C	6166855	1	2	132	0	1	0	0	0	0	0	0	0	3359	1189	41	4		4	CHD5	1	6166855	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08		6166855	243083766	1	118276											
SLC2A5	6518	broad.mit.edu	37	chr1	9097678	9097678	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgacaggtggaagctctttCagttcctccttttccgggta	11	10	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9097678	G	G	9097678	2	3	132	1	0	0	0	0	0	0	0	1	14662	813	29	4		4	SLC2A5	1	9097678	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	2930823	9097678	240152943	2	118277											
MTOR	2475	broad.mit.edu	37	chr1	11297992	11297992	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatggccagctcccggatctCaaacacctggtcattcagag	10	13	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11297992	G	G	11297992	3	3	132	1	0	0	0	0	1	0	0	0	10048	835	29	4	5717	4	MTOR	1	11297992	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	2200314	11297992	237952629	3	118278											
VPS13D	55187	broad.mit.edu	37	chr1	12333222	12333222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgggaaataatgaaaacCtgccttggtagatggatgat	13	4	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12333222	A	A	12333222	1	1	132	0	1	0	0	0	0	0	0	0	17319	696	24	2		2	VPS13D	1	12333222	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1035230	12333222	236917399	4	118279											
CASP9	842	broad.mit.edu	37	chr1	15819510	15819510	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgtttataaatccctttCaccgaaacagcattagcgac	5	11	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15819510	T	T	15819510	2	4	132	1	0	0	0	0	0	0	0	1	2705	813	29	4		4	CASP9	1	15819510	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	3486288	15819510	233431111	5	118280											
ARHGEF10L	55160	broad.mit.edu	37	chr1	18021631	18021631	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccccaggagggcactgctCagccgccctctctttctgca	9	18	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18021631	G	G	18021631	1	3	132	0	1	0	0	0	0	0	0	0	897	841	29	4		4	ARHGEF10L	1	18021631	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2202121	18021631	231228990	6	118281											
UBR4	23352	broad.mit.edu	37	chr1	19421528	19421528	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctacaagggcctgtaggaGaaggagactcagtcactctc	12	10	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19421528	C	C	19421528	1	2	132	0	1	0	0	0	0	0	0	0	17030	957	33	4		4	UBR4	1	19421528	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1399897	19421528	229829093	7	118282											
KIF17	57576	broad.mit.edu	37	chr1	20992649	20992649	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgtctgacttcaaaactatCcccttcacgcctctcccagt	4	17	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20992649	G	G	20992649	1	3	132	0	1	0	0	0	0	0	0	0	8349	870	30	4		4	KIF17	1	20992649	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1571121	20992649	228257972	8	118283											
SEPN1	57190	broad.mit.edu	37	chr1	26139275	26139275	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggggccctggatgaccagtCctgctgaggtgaggggcccg	19	11	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26139275	T	T	26139275	3	4	132	1	0	0	0	0	1	0	0	0	14169	855	30	4	1417	4	SEPN1	1	26139275	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	5146626	26139275	223111346	9	118284											
TMEM39B	55116	broad.mit.edu	37	chr1	32568034	32568034	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacccgcttccgggcagttCtttttcagcaaacccctgcg	8	17	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32568034	T	T	32568034	2	4	132	1	0	0	0	0	0	0	0	1	16285	912	32	4		4	TMEM39B	1	32568034	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	6428759	32568034	216682587	10	118285											
RBBP4	5928	broad.mit.edu	37	chr1	33149485	33149485	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaggtgatccaccctcctCagcctcccaaagtgctagga	8	16	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33149485	G	G	33149485	1	3	132	0	1	0	0	0	0	0	0	0	13209	841	29	4		4	RBBP4	1	33149485	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	581451	33149485	216101136	11	118286											
ZMYM4	9202	broad.mit.edu	37	chr1	35862214	35862214	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtaccagtgtttgttccCatacctcttcacctttatac	4	15	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35862214	A	A	35862214	2	1	132	1	0	0	0	0	0	0	0	1	17828	581	21	2		2	ZMYM4	1	35862214	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	2712729	35862214	213388407	12	118287											
MACF1	23499	broad.mit.edu	37	chr1	39827209	39827209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagaaaaggagagctccCtaaagaagcttctaccccag	9	11	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39827209	A	A	39827209	3	1	132	1	0	0	0	0	1	0	0	0	9232	680	24	2	12770	2	MACF1	1	39827209	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3964995	39827209	209423412	13	118288											
TMCO2	127391	broad.mit.edu	37	chr1	40717280	40717280	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catttgaaatgtgatggactCcaatcttttccaggaaagca	8	8	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40717280	G	G	40717280	1	3	132	0	1	0	0	0	0	0	0	0	16119	870	30	4		4	TMCO2	1	40717280	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	890071	40717280	208533341	14	118289											
TSPAN1	10103	broad.mit.edu	37	chr1	46649908	46649908	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggcatctgggtgtcaatcGatggggcatcctttctgaag	14	8	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46649908	A	A	46649908	3	1	132	1	0	0	0	0	1	0	0	0	16758	1058	37	4	109	4	TSPAN1	1	46649908	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	5932628	46649908	202600713	15	118290											
NSUN4	387338	broad.mit.edu	37	chr1	46827467	46827467	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagctggtaataccaaacctCatggccaattttggccccat	8	12	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46827467	G	G	46827467	2	3	132	1	0	0	0	0	0	0	0	1	10775	813	29	4		4	NSUN4	1	46827467	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	177559	46827467	202423154	16	118291											
YIPF1	54432	broad.mit.edu	37	chr1	54344402	54344402	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtccagcaagtaactgtcaGaaataaaataaaacataatg	6	6	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54344402	C	C	54344402	1	2	132	0	1	0	0	0	0	0	0	0	17604	957	33	4		4	YIPF1	1	54344402	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	7516935	54344402	194906219	17	118292											
LRRC42	115353	broad.mit.edu	37	chr1	54418039	54418039	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaagctgttctctgctgctGaagccagacagaaattcact	8	10	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54418039	A	A	54418039	3	1	132	1	0	0	0	0	1	0	0	0	9087	1291	45	4	369	4	LRRC42	1	54418039	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	73637	54418039	194832582	18	118293											
MIER1	57708	broad.mit.edu	37	chr1	67442271	67442271	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaaagcaagcatttgtttCttacaggtccgaacaaggtc	8	8	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67442271	G	G	67442271	1	3	132	0	1	0	0	0	0	0	0	0	9673	928	32	4		4	MIER1	1	67442271	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	13024232	67442271	181808350	19	118294											
IL12RB2	3595	broad.mit.edu	37	chr1	67833507	67833507	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttctgtccgataaaGggttgctggctcctcgccag	10	13	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67833507	T	T	67833507	5	4	132	1	0	0	0	0	0	0	1	0	7697	1014	35	2	1292	2	IL12RB2	1	67833507	Splice_Site	SNP	G	TCGA-49-4486-01A-01D-1265-08	391236	67833507	181417114	20	118295											
ACADM	34	broad.mit.edu	37	chr1	76199395	76199395	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaagttggatttttagaaGaaaaaaaaaggaaagtcagt	10	1	1	3	rs145811227	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76199395	C	C	76199395	1	2	132	0	1	0	0	0	0	0	0	0	113	957	33	4		4	ACADM	1	76199395	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	8365888	76199395	173051226	21	118296											
ZZZ3	26009	broad.mit.edu	37	chr1	78041914	78041914	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttgttgaagactaagtaaGaaaacaaatttttaattggt	8	3	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78041914	C	C	78041914	1	2	132	0	1	0	0	0	0	0	0	0	18385	957	33	4		4	ZZZ3	1	78041914	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1842519	78041914	171208707	22	118297											
COL24A1	255631	broad.mit.edu	37	chr1	86313300	86313300	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaagggcatggatacgtttCtttcccatccacagtgactc	8	11	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86313300	G	G	86313300	1	3	132	0	1	0	0	0	0	0	0	0	3715	928	32	4		4	COL24A1	1	86313300	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	8271386	86313300	162937321	23	118298											
GBP7	388646	broad.mit.edu	37	chr1	89598915	89598915	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactggcattgtgcctcaagCactgccaagcttcatccaga	8	13	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89598915	T	T	89598915	1	4	132	0	1	0	0	0	0	0	0	0	6341	725	25	4		4	GBP7	1	89598915	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3285615	89598915	159651706	24	118299											
DBT	1629	broad.mit.edu	37	chr1	100696224	100696224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaagatcacttttaattGggacccaatgacaaaaagag	7	7	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100696224	T	T	100696224	1	4	132	0	1	0	0	0	0	0	0	0	4291	1363	47	2		2	DBT	1	100696224	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	11097309	100696224	148554397	25	118300											
CDC14A	8556	broad.mit.edu	37	chr1	100933493	100933493	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagactttatatttcttattCtgtttcattctcttacagct	3	8	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100933493	G	G	100933493	1	3	132	0	1	0	0	0	0	0	0	0	3086	928	32	4		4	CDC14A	1	100933493	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	237269	100933493	148317128	26	118301											
DPH5	51611	broad.mit.edu	37	chr1	101487058	101487058	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcatgaaagtttaaactatGacattttagatagcgcttaa	6	5	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101487058	A	A	101487058	1	1	132	0	1	0	0	0	0	0	0	0	4763	1305	45	4		4	DPH5	1	101487058	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	553565	101487058	147763563	27	118302											
TTF2	8458	broad.mit.edu	37	chr1	117634431	117634431	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctgtggcttgtcttccctCttggaagtggcactggagtt	12	10	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117634431	G	G	117634431	1	3	132	0	1	0	0	0	0	0	0	0	16845	928	32	4		4	TTF2	1	117634431	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	16147373	117634431	131616190	28	118303											
ANKRD34A	284615	broad.mit.edu	37	chr1	145473380	145473380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcggtgggtcagggtaagCtacgcttggcccgtttgctt	17	9	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145473380	A	A	145473380	3	1	132	1	0	0	0	0	1	0	0	0	662	796	28	3	54	3	ANKRD34A	1	145473380	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	27838949	145473380	103777241	29	118304											
CHD1L	9557	broad.mit.edu	37	chr1	146727479	146727479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggattcagatttgctccagGtctttcctgtgtaacatatg	9	8	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146727479	T	T	146727479	3	4	132	1	0	0	0	0	1	0	0	0	3355	1261	44	3	373	3	CHD1L	1	146727479	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1254099	146727479	102523142	30	118305											
GOLPH3L	55204	broad.mit.edu	37	chr1	150620741	150620741	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacacaaaactcagtgatGgggtctctgacagtcaccag	9	11	4	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150620741	T	T	150620741	1	4	132	0	1	0	0	0	0	0	0	0	6633	1363	47	2		2	GOLPH3L	1	150620741	3'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	3893262	150620741	98629880	31	118306											
CDC42SE1	56882	broad.mit.edu	37	chr1	151026774	151026774	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcggtttcccttggatctCatctgctcctgaactgcacc	7	15	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151026774	T	T	151026774	3	4	132	1	0	0	0	0	1	0	0	0	3109	826	29	4	54	4	CDC42SE1	1	151026774	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	406033	151026774	98223847	32	118307											
RFX5	5993	broad.mit.edu	37	chr1	151316755	151316755	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatgccactgtagcaatatCtgatgcaagttaaagagcag	9	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151316755	G	G	151316755	5	3	132	1	0	0	0	0	0	0	1	0	13374	927	32	4	1393	4	RFX5	1	151316755	Splice_Site	SNP	C	TCGA-49-4486-01A-01D-1265-08	289981	151316755	97933866	33	118308											
TDRKH	11022	broad.mit.edu	37	chr1	151742673	151742673	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcaaccctggagtacgtgGaagagaagacaaatgtggac	13	8	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151742673	A	A	151742673	1	1	132	0	1	0	0	0	0	0	0	0	15859	1175	41	4		4	TDRKH	1	151742673	3'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	425918	151742673	97507948	34	118309											
TDRKH	11022	broad.mit.edu	37	chr1	151742814	151742814	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttataggagaccctcttccCctgtctttaaaaatgcaccc	5	13	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151742814	A	A	151742814	1	1	132	0	1	0	0	0	0	0	0	0	15859	638	22	2		2	TDRKH	1	151742814	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	141	151742814	97507807	35	118310											
DENND4B	9909	broad.mit.edu	37	chr1	153911514	153911514	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggagcgttcccgggatttGaggaagcctgaggggtatga	17	7	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153911514	C	C	153911514	2	2	132	1	0	0	0	0	0	0	0	1	4474	1277	45	4		4	DENND4B	1	153911514	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2168700	153911514	95339107	36	118311											
CHRNB2	1141	broad.mit.edu	37	chr1	154548343	154548343	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcggcatgttcctgcagcctCtcttccagaactacaccacc	6	17	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154548343	G	G	154548343	3	3	132	1	0	0	0	0	1	0	0	0	3422	913	32	4	1466	4	CHRNB2	1	154548343	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	636829	154548343	94702278	37	118312											
ZBTB7B	51043	broad.mit.edu	37	chr1	154987712	154987712	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaccacctccgccaccGccacctcggcctgttgcccg	7	24	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154987712	T	T	154987712	2	4	132	1	0	0	0	0	0	0	0	1	17680	1074	38	3		3	ZBTB7B	1	154987712	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	439369	154987712	94262909	38	118313											
GON4L	54856	broad.mit.edu	37	chr1	155754959	155754959	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atataatcaagagtctagtaGttagcaaaattcccttgtca	6	7	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155754959	A	A	155754959	1	1	132	0	1	0	0	0	0	0	0	0	6636	1044	36	4		4	GON4L	1	155754959	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	767247	155754959	93495662	39	118314											
TTC24	164118	broad.mit.edu	37	chr1	156555560	156555560	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctagcttctagttgcccCacgtttaccaagcacacgcc	6	16	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156555560	T	T	156555560	2	4	132	1	0	0	0	0	0	0	0	1	16818	581	21	4		4	TTC24	1	156555560	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	800601	156555560	92695061	40	118315											
GPATCH4	54865	broad.mit.edu	37	chr1	156566153	156566153	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagacatctcttcccacattCcccaagagctaaaatgaagt	5	12	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156566153	T	T	156566153	1	4	132	0	1	0	0	0	0	0	0	0	6658	870	30	4		4	GPATCH4	1	156566153	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	10593	156566153	92684468	41	118316											
FCRL4	83417	broad.mit.edu	37	chr1	157557312	157557312	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaattcccctctgtaggctGagagtctgtagctttcagct	10	10	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157557312	A	A	157557312	4	1	132	1	0	0	0	0	0	1	0	0	5854	1299	45	4	978	4	FCRL4	1	157557312	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	991159	157557312	91693309	42	118317											
FCRL1	115350	broad.mit.edu	37	chr1	157765949	157765949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcagcctggaatagatGtctaaggaaacctggaagca	10	9	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157765949	T	T	157765949	3	4	132	1	0	0	0	0	1	0	0	0	5851	1368	48	3	63	3	FCRL1	1	157765949	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	208637	157765949	91484672	43	118318											
CD1C	911	broad.mit.edu	37	chr1	158262686	158262686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagactggaggttggaagtGtaggtaggtggttcttgagc	17	3	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158262686	T	T	158262686	1	4	132	0	1	0	0	0	0	0	0	0	3006	1392	48	3		3	CD1C	1	158262686	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	496737	158262686	90987935	44	118319											
OR6Y1	391112	broad.mit.edu	37	chr1	158517081	158517081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactttgttggaattgtagGcatacatgagtttgggacgg	13	6	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517081	T	T	158517081	3	4	132	1	0	0	0	0	1	0	0	0	11307	1203	42	3	164	3	OR6Y1	1	158517081	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	254395	158517081	90733540	45	118320											
SPTA1	6708	broad.mit.edu	37	chr1	158612435	158612435	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaatatttctatcataactGaggtgacggtgacttctgaa	8	7	3	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158612435	T	T	158612435	1	4	132	0	1	0	0	0	0	0	0	0	15234	1305	45	3		3	SPTA1	1	158612435	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	95354	158612435	90638186	46	118321											
AIM2	9447	broad.mit.edu	37	chr1	159042886	159042886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcgattctcagtaaaaGggggcaaagagacaggtgca	14	6	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159042886	T	T	159042886	1	4	132	0	1	0	0	0	0	0	0	0	432	1015	35	2		2	AIM2	1	159042886	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	430451	159042886	90207735	47	118322											
PPOX	5498	broad.mit.edu	37	chr1	161137915	161137915	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccagcgccgccttggacctGaggtgacacttgcccagagg	13	15	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161137915	C	C	161137915	3	2	132	1	0	0	0	0	1	0	0	0	12449	1291	45	4	483	4	PPOX	1	161137915	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2095029	161137915	88112706	48	118323											
ATF6	22926	broad.mit.edu	37	chr1	161735996	161735996	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattcaaatttgcttagtctCtgacgttttcctgtgtcgta	7	8	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161735996	G	G	161735996	1	3	132	0	1	0	0	0	0	0	0	0	1088	928	32	4		4	ATF6	1	161735996	5'Flank	SNP	C	TCGA-49-4486-01A-01D-1265-08	598081	161735996	87514625	49	118324											
ATF6	22926	broad.mit.edu	37	chr1	161736217	161736217	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccgggactctttcacaggCtggatgaagattggggtgag	16	8	2	3	rs149825732		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161736217	G	G	161736217	3	3	132	1	0	0	0	0	1	0	0	0	1088	796	28	4	69	4	ATF6	1	161736217	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	221	161736217	87514404	50	118325											
XCL1	6375	broad.mit.edu	37	chr1	168549444	168549444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctcagaagttgtgctGggtgggtatctagaagtata	13	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168549444	A	A	168549444	1	1	132	0	1	0	0	0	0	0	0	0	17550	1363	47	4		4	XCL1	1	168549444	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	6813227	168549444	80701177	51	118326											
CENPL	91687	broad.mit.edu	37	chr1	173780416	173780416	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggatgcactaggagttgactCtggtgcactgtaagaatcca	12	8	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173780416	G	G	173780416	3	3	132	1	0	0	0	0	1	0	0	0	3266	922	32	4	1170	4	CENPL	1	173780416	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	5230972	173780416	75470205	52	118327											
RALGPS2	55103	broad.mit.edu	37	chr1	178753528	178753528	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagacagtatgtaaaagGctgcattttctttcacttta	8	6	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178753528	T	T	178753528	1	4	132	0	1	0	0	0	0	0	0	0	13126	1218	42	3		3	RALGPS2	1	178753528	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	4973112	178753528	70497093	53	118328											
CACNA1E	777	broad.mit.edu	37	chr1	181763974	181763974	+	Intron	SNP	G	A	A													atcgttaatccataccttgtGtttctctgggggcttgtatt							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181763974	A	A	181763974	1	1	132	0	1	0	0	0	0	0	0	0	2568	1392	48	4		4	CACNA1E	1	181763974	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	3010446	181763974	67486647	54	118329	516	2									
CACNA1E	777	broad.mit.edu	37	chr1	181763983	181763983	+	Intron	SNP	G	T	T													ccataccttgtgtttctctgGgggcttgtatttccaggtgg							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181763983	T	T	181763983	1	4	132	0	1	0	0	0	0	0	0	0	2568	1247	43	2		2	CACNA1E	1	181763983	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	9	181763983	67486638	55	118330	516	2									
DHX9	1660	broad.mit.edu	37	chr1	182847133	182847133	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatacacatgagtcttagaAttaaccactttttcctatgt	4	8	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182847133	T	T	182847133	1	4	132	0	1	0	0	0	0	0	0	0	4556	116	4	5		5	DHX9	1	182847133	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	1083150	182847133	66403488	56	118331											
CACNA1S	779	broad.mit.edu	37	chr1	201042471	201042471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtctggttcccagattgGgaggtctgctgtgcctctca	13	10	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201042471	T	T	201042471	1	4	132	0	1	0	0	0	0	0	0	0	2573	1247	43	2		2	CACNA1S	1	201042471	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	18195338	201042471	48208150	57	118332											
PKP1	5317	broad.mit.edu	37	chr1	201289379	201289379	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctctgccctcttccaccCtcttctctcccccaggaacc	3	21	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201289379	T	T	201289379	1	4	132	0	1	0	0	0	0	0	0	0	12079	696	24	4		4	PKP1	1	201289379	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	246908	201289379	47961242	58	118333											
TNNI1	7135	broad.mit.edu	37	chr1	201386167	201386167	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaggctcttccctctcctCagatgccaaccccaccttcc	4	21	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201386167	T	T	201386167	1	4	132	0	1	0	0	0	0	0	0	0	16449	841	29	4		4	TNNI1	1	201386167	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	96788	201386167	47864454	59	118334											
CHI3L1	1116	broad.mit.edu	37	chr1	203154231	203154231	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtgagcagggtggggcctCgcccttcctcctgggtgggg	19	11	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203154231	T	T	203154231	1	4	132	0	1	0	0	0	0	0	0	0	3371	899	31	4		4	CHI3L1	1	203154231	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1768064	203154231	46096390	60	118335											
TRAF5	7188	broad.mit.edu	37	chr1	211546060	211546060	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctagtcactgttatggggtGataagaggacttcttggggc	14	6	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211546060	T	T	211546060	1	4	132	0	1	0	0	0	0	0	0	0	16568	1305	45	3		3	TRAF5	1	211546060	3'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	8391829	211546060	37704561	61	118336											
CENPF	1063	broad.mit.edu	37	chr1	214802433	214802433	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaaattgacggaagatttGagttgtcagcgacaaaatgc	10	5	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214802433	C	C	214802433	3	2	132	1	0	0	0	0	1	0	0	0	3261	1281	45	4	1139	4	CENPF	1	214802433	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	3256373	214802433	34448188	62	118337											
KCNK2	3776	broad.mit.edu	37	chr1	215259970	215259970	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgatccagaagcaaacattCatatcccaacattcctgtgt	6	11	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215259970	G	G	215259970	3	3	132	1	0	0	0	0	1	0	0	0	8136	825	29	4	355	4	KCNK2	1	215259970	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	457537	215259970	33990651	63	118338											
USH2A	7399	broad.mit.edu	37	chr1	215848324	215848324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagtcacaggatcaaagCtaaaaggatagagcatttca	9	6	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215848324	A	A	215848324	3	1	132	1	0	0	0	0	1	0	0	0	17162	797	28	3	2719	3	USH2A	1	215848324	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	588354	215848324	33402297	64	118339											
USH2A	7399	broad.mit.edu	37	chr1	215914740	215914740	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaataaagtagttgatgatGattccatttggtttttcagg	9	3	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215914740	C	C	215914740	3	2	132	1	0	0	0	0	1	0	0	0	17162	1280	45	4	3972	4	USH2A	1	215914740	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	66416	215914740	33335881	65	118340											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220386243	220386243	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctacccttcttcgacattTaaggaaccactccagccaac	4	16	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220386243	A	A	220386243	3	1	132	1	0	0	0	0	1	0	0	0	13044	1751	61	5	3937	5	RAB3GAP2	1	220386243	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	4471503	220386243	28864378	66	118341											
OBSCN	84033	broad.mit.edu	37	chr1	228464156	228464156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtgcaccgcagtgcgcCaggtacggctcgtacggggc	17	13	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228464156	A	A	228464156	3	1	132	1	0	0	0	0	1	0	0	0	10907	595	21	2	6308	2	OBSCN	1	228464156	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	8077913	228464156	20786465	67	118342											
PGBD5	79605	broad.mit.edu	37	chr1	230486821	230486821	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatacaggatcctcatcgatCaggggttcatgtagcacctg	10	10	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230486821	G	G	230486821	2	3	132	1	0	0	0	0	0	0	0	1	11879	813	29	4		4	PGBD5	1	230486821	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	2022665	230486821	18763800	68	118343											
SLC35F3	148641	broad.mit.edu	37	chr1	234458686	234458686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagggtgcccccaggccCtgcccactctccagggacat	13	16	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234458686	A	A	234458686	1	1	132	0	1	0	0	0	0	0	0	0	14704	696	24	2		2	SLC35F3	1	234458686	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3971865	234458686	14791935	69	118344											
NID1	4811	broad.mit.edu	37	chr1	236144994	236144994	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgctgcgtgccgtccagcttCgccacttctattcgatccag	9	16	1	0	rs148662892	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236144994	T	T	236144994	2	4	132	1	0	0	0	0	0	0	0	1	10509	871	31	4		4	NID1	1	236144994	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1686308	236144994	13105627	70	118345											
MTR	4548	broad.mit.edu	37	chr1	237049656	237049656	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatggattggctgtctgAacctcacccaggtctgtttg	10	11	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237049656	C	C	237049656	3	2	132	1	0	0	0	0	1	0	0	0	10052	246	9	5	2946	5	MTR	1	237049656	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	904662	237049656	12200965	71	118346											
FMN2	56776	broad.mit.edu	37	chr1	240306964	240306964	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgcagccaggattgcctcGatggcctcacccttccccag	10	16	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240306964	A	A	240306964	1	1	132	0	1	0	0	0	0	0	0	0	6008	1073	37	4		4	FMN2	1	240306964	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	3257308	240306964	8943657	72	118347											
SDCCAG8	10806	broad.mit.edu	37	chr1	243493899	243493899	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaggcaggcggagcgacttGaaaaagaacttgcatctcag	13	8	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243493899	C	C	243493899	3	2	132	1	0	0	0	0	1	0	0	0	14072	1291	45	4	1164	4	SDCCAG8	1	243493899	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	3186935	243493899	5756722	73	118348											
OR2M7	391196	broad.mit.edu	37	chr1	248487240	248487240	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtgatgatgattgcaaCagggaaaacaagcattacta	11	5	0	3	rs146462189	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248487240	G	G	248487240	3	3	132	1	0	0	0	0	1	0	0	0	11108	478	17	4	310	4	OR2M7	1	248487240	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4993341	248487240	763381	74	118349											
OTOF	9381	broad.mit.edu	37	chr2	26695304	26695304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttagtgtccttttctctcGgggcagatagtctggttcac	10	10	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26695304	T	T	26695304	1	4	132	0	1	0	0	0	0	0	0	0	11397	1131	39	1		1	OTOF	2	26695304	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08		26695304	216504069	75	118350											
C2orf18	54978	broad.mit.edu	37	chr2	26998291	26998291	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttagtgacagatggccttCgccttgggaagctaactgta	11	10	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26998291	T	T	26998291	1	4	132	0	1	0	0	0	0	0	0	0	2180	899	31	4		4	C2orf18	2	26998291	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	302987	26998291	216201082	76	118351											
EIF2B4	8890	broad.mit.edu	37	chr2	27587541	27587541	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgcccctctccctccctctCaagtcttcacaggtagctgg	7	19	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27587541	G	G	27587541	1	3	132	0	1	0	0	0	0	0	0	0	5043	841	29	4		4	EIF2B4	2	27587541	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	589250	27587541	215611832	77	118352											
STRN	6801	broad.mit.edu	37	chr2	37152177	37152177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgcaccccagcctgggCaacaagaacgaaactccgtc	8	16	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37152177	A	A	37152177	1	1	132	0	1	0	0	0	0	0	0	0	15447	725	25	3		3	STRN	2	37152177	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	9564636	37152177	206047196	78	118353											
CYP1B1	1545	broad.mit.edu	37	chr2	38301556	38301556	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggctggcgccgaagatgtCagtgatagtggccggtacgt	16	9	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38301556	T	T	38301556	3	4	132	1	0	0	0	0	1	0	0	0	4184	826	29	4	663	4	CYP1B1	2	38301556	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1149379	38301556	204897817	79	118354											
SLC8A1	6546	broad.mit.edu	37	chr2	40656137	40656137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccacctctgcggataatGgtaagggccacagtaccaca	9	13	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40656137	T	T	40656137	2	4	132	1	0	0	0	0	0	0	0	1	14820	1335	47	2		2	SLC8A1	2	40656137	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2354581	40656137	202543236	80	118355											
STON1	11037	broad.mit.edu	37	chr2	48822502	48822502	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaattcaccgaaaccacaCcaagtcctgctactgtagag	7	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48822502	G	G	48822502	1	3	132	0	1	0	0	0	0	0	0	0	15434	522	18	4		4	STON1	2	48822502	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	8166365	48822502	194376871	81	118356											
FSHR	2492	broad.mit.edu	37	chr2	49191147	49191147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaatcaacatctcagatcCagtatagcaaatacatcact	4	10	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49191147	A	A	49191147	1	1	132	0	1	0	0	0	0	0	0	0	6133	609	21	2		2	FSHR	2	49191147	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	368645	49191147	194008226	82	118357											
NRXN1	9378	broad.mit.edu	37	chr2	50318356	50318356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtccaataaatagttgatGgtttctcagaaaaccacaat	6	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50318356	T	T	50318356	1	4	132	0	1	0	0	0	0	0	0	0	10760	1363	47	2		2	NRXN1	2	50318356	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1127209	50318356	192881017	83	118358											
PAPOLG	64895	broad.mit.edu	37	chr2	61009128	61009128	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcgaacagtaatggtagaaGaatttaaacaaggtaaacat	8	5	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61009128	A	A	61009128	3	1	132	1	0	0	0	0	1	0	0	0	11525	943	33	4	1057	4	PAPOLG	2	61009128	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	10690772	61009128	182190245	84	118359											
KIAA1841	84542	broad.mit.edu	37	chr2	61298824	61298824	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccctaatggctgctggagaGagtcctgttgaaactttagc	11	9	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61298824	C	C	61298824	3	2	132	1	0	0	0	0	1	0	0	0	8331	933	33	4	240	4	KIAA1841	2	61298824	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	289696	61298824	181900549	85	118360											
PPP3R1	5534	broad.mit.edu	37	chr2	68414352	68414352	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtatgaaatgatggtagtAtaagagaatgaagtcagtga	12	2	1	5			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68414352	G	G	68414352	1	3	132	0	1	0	0	0	0	0	0	0	12501	464	16	5		5	PPP3R1	2	68414352	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	7115528	68414352	174785021	86	118361											
EXOC6B	23233	broad.mit.edu	37	chr2	72945355	72945355	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggggatgttgtccaccatCaccttgcagaatcgatagtg	11	9	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72945355	T	T	72945355	2	4	132	1	0	0	0	0	0	0	0	1	5351	813	29	4		4	EXOC6B	2	72945355	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	4531003	72945355	170254018	87	118362											
DGUOK	1716	broad.mit.edu	37	chr2	74177856	74177856	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctacctccaggcttctccCcaggtaacactgaacctaca	5	16	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74177856	A	A	74177856	2	1	132	1	0	0	0	0	0	0	0	1	4515	610	22	2		2	DGUOK	2	74177856	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1232501	74177856	169021517	88	118363											
C2orf3	6936	broad.mit.edu	37	chr2	75929268	75929268	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acattttttatggagattctCtcatattatattctaataaa	3	5	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75929268	G	G	75929268	1	3	132	0	1	0	0	0	0	0	0	0	2184	928	32	4		4	C2orf3	2	75929268	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1751412	75929268	167270105	89	118364											
CTNNA2	1496	broad.mit.edu	37	chr2	80136694	80136695	+	Intron	DEL	TG	-	-													ctctcttctctgctgattttTgtgtgtgtgtgtgtgatact							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80136695	-	-	80136694	6	5	132	0	1	1	0	1	0	0	0	0	4047	1827	63	0		0	CTNNA2	2	80136694	Intron	DEL	TG	TCGA-49-4486-01A-01D-1265-08	4207426	80136694	163062679	90	118365											
VPS24	51652	broad.mit.edu	37	chr2	86732844	86732844	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctccaaaatggtagtcctCacaacagaggtgtagtgcaa	9	9	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86732844	T	T	86732844	1	4	132	0	1	0	0	0	0	0	0	0	17322	841	29	4		4	VPS24	2	86732844	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	6596150	86732844	156466529	91	118366											
FABP1	2168	broad.mit.edu	37	chr2	88427554	88427554	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggtggcaatagagctccCtcttcacgactgacctgcgg	11	13	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88427554	A	A	88427554	1	1	132	1	0	0	0	0	0	0	0	0	5401	696	24	2		2	FABP1	2	88427554	Translation_Start_Site	SNP	C	TCGA-49-4486-01A-01D-1265-08	1694710	88427554	154771819	92	118367											
ZNF514	84874	broad.mit.edu	37	chr2	95815686	95815686	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctgcctgaattctgtatCacatttataagatccttctc	5	10	4	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95815686	T	T	95815686	3	4	132	1	0	0	0	0	1	0	0	0	18086	826	29	4	662	4	ZNF514	2	95815686	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	7388132	95815686	147383687	93	118368											
KIAA1310	55683	broad.mit.edu	37	chr2	97275266	97275266	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtccaccatgctctgagtCaacccttctgatttcttctt	5	14	5	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97275266	G	G	97275266	3	3	132	1	0	0	0	0	1	0	0	0	8292	825	29	4	1323	4	KIAA1310	2	97275266	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1459580	97275266	145924107	94	118369											
EIF5B	9669	broad.mit.edu	37	chr2	99977860	99977860	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaagtgggatgggtcagagGaggatgaggataacagtaaa	17	2	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99977860	T	T	99977860	4	4	132	1	0	0	0	0	0	1	0	0	5086	1175	41	3	510	3	EIF5B	2	99977860	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2702594	99977860	143221513	95	118370											
EIF5B	9669	broad.mit.edu	37	chr2	99978250	99978250	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggagtaattcctgcctctGaagagaaagcagagactccc	10	11	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99978250	A	A	99978250	3	1	132	1	0	0	0	0	1	0	0	0	5086	1291	45	4	900	4	EIF5B	2	99978250	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	390	99978250	143221123	96	118371											
EIF5B	9669	broad.mit.edu	37	chr2	99980189	99980189	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagagaaagagaagaaaaAaggacctagcaaagccactg	10	6	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99980189	C	C	99980189	3	2	132	1	0	0	0	0	1	0	0	0	5086	14	1	5	1019	5	EIF5B	2	99980189	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	1939	99980189	143219184	97	118372											
EIF5B	9669	broad.mit.edu	37	chr2	99998629	99998629	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccattgtttctagtttgataGagagaatgtacggattccag	10	6	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99998629	C	C	99998629	3	2	132	1	0	0	0	0	1	0	0	0	5086	942	33	4	2119	4	EIF5B	2	99998629	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	18440	99998629	143200744	98	118373											
TBC1D8	11138	broad.mit.edu	37	chr2	101646204	101646205	+	Missense_Mutation	DNP	GA	AG	AG													tctgggagatgacccttgatGagctcctcgaagacagactg							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	101646205	AG	AG	101646204	3	1	132	1	0	0	0	0	1	0	0	0	15747	1277	45	4	1532	4	TBC1D8	2	101646204	Missense_Mutation	DNP	GA	TCGA-49-4486-01A-01D-1265-08	1647575	101646204	141553169	99	118374											
RGPD4	285190	broad.mit.edu	37	chr2	108488039	108488039	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagctgccaagttaatacaGagagctgaagaaatgaagag	12	5	0	6			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108488039	A	A	108488039	2	1	132	1	0	0	0	0	0	0	0	1	13396	933	33	4		4	RGPD4	2	108488039	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	6841835	108488039	134711334	100	118375											
CHCHD5	84269	broad.mit.edu	37	chr2	113346493	113346493	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctgacggcaggaaaactgGacatgaatgactgcccccac	10	13	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113346493	A	A	113346493	1	1	132	0	1	0	0	0	0	0	0	0	3350	1189	41	4		4	CHCHD5	2	113346493	3'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	4858454	113346493	129852880	101	118376											
EPB41L5	57669	broad.mit.edu	37	chr2	120900596	120900596	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taggaggaagtggtgaagttGactgagaaatgccttaataa	13	3	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120900596	C	C	120900596	3	2	132	1	0	0	0	0	1	0	0	0	5199	1281	45	4	1872	4	EPB41L5	2	120900596	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	7554103	120900596	122298777	102	118377											
POTEE	445582	broad.mit.edu	37	chr2	131976380	131976380	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggagcccaggtaccacgtCcgtggagaagatctggacaa	13	10	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131976380	T	T	131976380	2	4	132	1	0	0	0	0	0	0	0	1	12360	842	30	4		4	POTEE	2	131976380	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	11075784	131976380	111222993	103	118378											
LRP1B	53353	broad.mit.edu	37	chr2	141609091	141609091	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggatggaaatagcaccacCacctaaaatatttttgaaaa	7	7	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141609091	G	G	141609091	1	3	132	0	1	0	0	0	0	0	0	0	9042	609	21	4		4	LRP1B	2	141609091	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	9632711	141609091	101590282	104	118379											
RIF1	55183	broad.mit.edu	37	chr2	152303012	152303012	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgttgtgctgctttggtgGcaacagcagaagagaacttg	13	8	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152303012	A	A	152303012	3	1	132	1	0	0	0	0	1	0	0	0	13468	1203	42	4	2241	4	RIF1	2	152303012	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	10693921	152303012	90896361	105	118380											
ACVR1	90	broad.mit.edu	37	chr2	158626930	158626930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtacaattccgtttccCtgaaccatgacttctcatca	5	12	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158626930	T	T	158626930	3	4	132	1	0	0	0	0	1	0	0	0	220	681	24	4	809	4	ACVR1	2	158626930	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	6323918	158626930	84572443	106	118381											
LY75	4065	broad.mit.edu	37	chr2	160755639	160755639	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctccctgcctgctgaggaGagtctgagcactactggact	12	12	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160755639	C	C	160755639	1	2	132	0	1	0	0	0	0	0	0	0	9187	957	33	4		4	LY75	2	160755639	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	2128709	160755639	82443734	107	118382											
SCN9A	6335	broad.mit.edu	37	chr2	167168258	167168258	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtcctgggggaggcaaCattgccatcttttcatcctg	12	10	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167168258	T	T	167168258	3	4	132	1	0	0	0	0	1	0	0	0	14038	478	17	4	6028	4	SCN9A	2	167168258	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	6412619	167168258	76031115	108	118383											
CYBRD1	79901	broad.mit.edu	37	chr2	172379251	172379251	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatccagggcatcggtActggcacctcctgggggggt	14	12	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172379251	G	G	172379251	1	3	132	0	1	0	0	0	0	0	0	0	4167	406	14	5		5	CYBRD1	2	172379251	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	5210993	172379251	70820122	109	118384											
TTN	7273	broad.mit.edu	37	chr2	179417425	179417425	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcacctttacctttcctttCtacaacatattctgtgatga	3	11	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179417425	G	G	179417425	3	3	132	1	0	0	0	0	1	0	0	0	16861	922	32	4	17889	4	TTN	2	179417425	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	7038174	179417425	63781948	110	118385											
TTN	7273	broad.mit.edu	37	chr2	179432168	179432168	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agattcttcaatttccttatCtcctcttaaccactcaatgg	3	12	5	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179432168	T	T	179432168	3	4	132	1	0	0	0	0	1	0	0	0	16861	913	32	4	29436	4	TTN	2	179432168	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	14743	179432168	63767205	111	118386											
TTN	7273	broad.mit.edu	37	chr2	179585068	179585068	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttattagttaggcaagaacaGataggaggaaggggcatata	13	3	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179585068	C	C	179585068	1	2	132	0	1	0	0	0	0	0	0	0	16861	957	33	4		4	TTN	2	179585068	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	152900	179585068	63614305	112	118387											
TTN	7273	broad.mit.edu	37	chr2	179650595	179650595	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgatgatatgtgcattcCcttttgatcagtagttttga	9	6	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179650595	T	T	179650595	3	4	132	1	0	0	0	0	1	0	0	0	16861	632	22	4	109034	4	TTN	2	179650595	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	65527	179650595	63548778	113	118388											
CCDC141	285025	broad.mit.edu	37	chr2	179702564	179702564	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacttcagagagataactcGagacaacctacaaggttaaa	7	9	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179702564	A	A	179702564	1	1	132	0	1	0	0	0	0	0	0	0	2801	1073	37	4		4	CCDC141	2	179702564	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	51969	179702564	63496809	114	118389											
WDR75	84128	broad.mit.edu	37	chr2	190313061	190313061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcagtgtgaaaacaggCtaatacagtatgtaaaactt	8	6	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190313061	A	A	190313061	1	1	132	0	1	0	0	0	0	0	0	0	17452	812	28	3		3	WDR75	2	190313061	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	10610497	190313061	52886312	115	118390											
PARD3B	117583	broad.mit.edu	37	chr2	206023445	206023445	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatgtgtattcccctaacaGaaaggagaacctgactgctg	9	10	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206023445	C	C	206023445	5	2	132	1	0	0	0	0	0	0	1	0	11538	956	33	4	1476	4	PARD3B	2	206023445	Splice_Site	SNP	G	TCGA-49-4486-01A-01D-1265-08	15710384	206023445	37175928	116	118391											
NRP2	8828	broad.mit.edu	37	chr2	206562454	206562454	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgactgcaagtaagcacCgtcctgtcccactgtgtatc	9	14	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206562454	A	A	206562454	1	1	132	0	1	0	0	0	0	0	0	0	10756	667	23	1		1	NRP2	2	206562454	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	539009	206562454	36636919	117	118392											
CRYGB	1419	broad.mit.edu	37	chr2	209007437	209007437	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatcaagaaacctcctgtaCtcccccggcctcagcagata	6	16	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209007437	T	T	209007437	2	4	132	1	0	0	0	0	0	0	0	1	3947	564	20	4		4	CRYGB	2	209007437	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	2444983	209007437	34191936	118	118393											
SPAG16	79582	broad.mit.edu	37	chr2	214354705	214354705	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggattcagaatttcccataGatatgcaaccaaatccaaac	5	10	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214354705	C	C	214354705	3	2	132	1	0	0	0	0	1	0	0	0	15094	942	33	4	1015	4	SPAG16	2	214354705	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	5347268	214354705	28844668	119	118394											
SPEG	10290	broad.mit.edu	37	chr2	220344819	220344819	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacctgagtttgtagcacccGagattgtcaatcagagcccc	9	13	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220344819	C	C	220344819	3	2	132	1	0	0	0	0	1	0	0	0	15154	1059	37	4	5409	4	SPEG	2	220344819	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	5990114	220344819	22854554	120	118395											
SLC4A3	6508	broad.mit.edu	37	chr2	220504185	220504185	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggccagccacaccccgctCcccaccttctccctgcaggc	7	23	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220504185	T	T	220504185	1	4	132	0	1	0	0	0	0	0	0	0	14769	870	30	4		4	SLC4A3	2	220504185	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	159366	220504185	22695188	121	118396											
TRIP12	9320	broad.mit.edu	37	chr2	230667268	230667268	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctaaataccaacactgacAtaatacacaaaaagactaaa	2	11	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230667268	G	G	230667268	1	3	132	0	1	0	0	0	0	0	0	0	16681	232	8	5		5	TRIP12	2	230667268	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	10163083	230667268	12532105	122	118397											
SRGAP3	9901	broad.mit.edu	37	chr3	9101977	9101977	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgcgttggtggctgccaGattgagcaagtagtcattcc	13	9	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9101977	C	C	9101977	3	2	132	1	0	0	0	0	1	0	0	0	15265	933	33	4	2663	4	SRGAP3	3	9101977	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08		9101977	188920453	123	118398											
IQSEC1	9922	broad.mit.edu	37	chr3	12961967	12961967	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagtcctctagcttcattttCcgctcgggcttgacattggg	10	11	2	1	rs146107147	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12961967	G	G	12961967	2	3	132	1	0	0	0	0	0	0	0	1	7887	842	30	4		4	IQSEC1	3	12961967	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	3859990	12961967	185060463	124	118399											
KAT2B	8850	broad.mit.edu	37	chr3	20189999	20189999	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaataccattaacattttCtaagtatagatttaaaactc	4	6	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20189999	G	G	20189999	1	3	132	0	1	0	0	0	0	0	0	0	8052	928	32	4		4	KAT2B	3	20189999	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	7228032	20189999	177832431	125	118400											
OXSM	54995	broad.mit.edu	37	chr3	25833286	25833286	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggctctgagcacaaactcaGatcccaagttggcatgtcga	11	11	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25833286	C	C	25833286	3	2	132	1	0	0	0	0	1	0	0	0	11429	942	33	4	777	4	OXSM	3	25833286	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	5643287	25833286	172189144	126	118401											
AZI2	64343	broad.mit.edu	37	chr3	28379446	28379446	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accctgctgagtttccacctCtgtcctcagctggaggagtt	10	13	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28379446	G	G	28379446	3	3	132	1	0	0	0	0	1	0	0	0	1246	922	32	4	866	4	AZI2	3	28379446	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	2546160	28379446	169642984	127	118402											
ARPP21	10777	broad.mit.edu	37	chr3	35785939	35785939	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcactttcatgatggccacAtgcctcctgcccagagcccg	8	16	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35785939	T	T	35785939	1	4	132	0	1	0	0	0	0	0	0	0	982	232	8	5		5	ARPP21	3	35785939	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	7406493	35785939	162236491	128	118403											
TTC21A	199223	broad.mit.edu	37	chr3	39153855	39153855	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactgtgcctggcagggcctCagggttttgggtggcaaagt	17	8	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39153855	G	G	39153855	1	3	132	0	1	0	0	0	0	0	0	0	16813	841	29	4		4	TTC21A	3	39153855	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3367916	39153855	158868575	129	118404											
COL7A1	1294	broad.mit.edu	37	chr3	48605555	48605555	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggacccatgaagccaacatCtcctttttctcctcggatac	7	14	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48605555	G	G	48605555	3	3	132	1	0	0	0	0	1	0	0	0	3736	913	32	4	1047	4	COL7A1	3	48605555	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	9451700	48605555	149416875	130	118405											
DNAH1	25981	broad.mit.edu	37	chr3	52396948	52396948	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttagggaggagggccggatGaagctgggggtgctctgggg	23	5	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52396948	A	A	52396948	1	1	132	0	1	0	0	0	0	0	0	0	4637	1305	45	4		4	DNAH1	3	52396948	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	3791393	52396948	145625482	131	118406											
FAM116A	201627	broad.mit.edu	37	chr3	57618940	57618940	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggcgggaaaaacatttaTatacccttcaccaaatcatt	7	9	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57618940	C	C	57618940	1	2	132	0	1	0	0	0	0	0	0	0	5453	1421	49	5		5	FAM116A	3	57618940	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	5221992	57618940	140403490	132	118407											
PRICKLE2	166336	broad.mit.edu	37	chr3	64148775	64148775	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgacataagggactttctCttctgggagacagctatagt	11	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64148775	T	T	64148775	3	4	132	1	0	0	0	0	1	0	0	0	12593	922	32	4	2383	4	PRICKLE2	3	64148775	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	6529835	64148775	133873655	133	118408											
CCDC52	152185	broad.mit.edu	37	chr3	113225439	113225439	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggaccacagcggttcactCtgacaaatgacatctaggaa	11	10	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113225439	T	T	113225439	3	4	132	1	0	0	0	0	1	0	0	0	2850	913	32	4	2621	4	CCDC52	3	113225439	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	49076664	113225439	84796991	134	118409											
ATP6V1A	523	broad.mit.edu	37	chr3	113528247	113528247	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caacttcttgaagacatgcaGaatgcattccgtagccttga	8	10	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113528247	C	C	113528247	3	2	132	1	0	0	0	0	1	0	0	0	1181	933	33	4	1881	4	ATP6V1A	3	113528247	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	302808	113528247	84494183	135	118410											
ARHGAP31	57514	broad.mit.edu	37	chr3	119134031	119134031	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcgcctggagagcacccCgcaaagttacagctaaagag	10	12	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119134031	A	A	119134031	2	1	132	1	0	0	0	0	0	0	0	1	882	639	23	1		1	ARHGAP31	3	119134031	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	5605784	119134031	78888399	136	118411											
PARP9	83666	broad.mit.edu	37	chr3	122274116	122274116	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgccagtgcaagagaaTagaaacaaagacttaccgtc	9	10	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122274116	C	C	122274116	1	2	132	0	1	0	0	0	0	0	0	0	11560	1421	49	5		5	PARP9	3	122274116	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	3140085	122274116	75748314	137	118412											
PARP15	165631	broad.mit.edu	37	chr3	122335957	122335957	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctactggagatatagccactGaacaggtagatgttattgta	10	6	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122335957	A	A	122335957	3	1	132	1	0	0	0	0	1	0	0	0	11553	1291	45	4	1037	4	PARP15	3	122335957	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	61841	122335957	75686473	138	118413											
ESYT3	83850	broad.mit.edu	37	chr3	138178914	138178914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtaagcctgctgctccctGggagtaggcactggtctgct	14	12	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138178914	T	T	138178914	1	4	132	0	1	0	0	0	0	0	0	0	5308	1363	47	2		2	ESYT3	3	138178914	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	15842957	138178914	59843516	139	118414											
ATP1B3	483	broad.mit.edu	37	chr3	141595803	141595803	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggcctcggtcccgggggcgCcgggcgcggtctggtgggaa	21	13	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141595803	G	G	141595803	1	3	132	0	1	0	0	0	0	0	0	0	1138	754	26	4		4	ATP1B3	3	141595803	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3416889	141595803	56426627	140	118415											
ZIC4	84107	broad.mit.edu	37	chr3	147113672	147113672	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgtgtattttgagattttCtgatctagcaaagaccttcc	7	7	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147113672	G	G	147113672	3	3	132	1	0	0	0	0	1	0	0	0	17807	922	32	4	361	4	ZIC4	3	147113672	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	5517869	147113672	50908758	141	118416											
AADACL2	344752	broad.mit.edu	37	chr3	151475041	151475041	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actggagtattcttcttcctGagaagtatagaaaagactat	8	6	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151475041	C	C	151475041	3	2	132	1	0	0	0	0	1	0	0	0	11	1291	45	4	883	4	AADACL2	3	151475041	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	4361369	151475041	46547389	142	118417											
DHX36	170506	broad.mit.edu	37	chr3	154001098	154001098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaatctatatttctccCgcaaacaaagattactactg	5	9	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154001098	A	A	154001098	1	1	132	0	1	0	0	0	0	0	0	0	4549	667	23	1		1	DHX36	3	154001098	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2526057	154001098	44021332	143	118418											
PTX3	5806	broad.mit.edu	37	chr3	157160340	157160340	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catatgaaatccagctgtatCtcagctaccaatccatagtg	6	11	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157160340	G	G	157160340	3	3	132	1	0	0	0	0	1	0	0	0	12930	913	32	4	728	4	PTX3	3	157160340	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3159242	157160340	40862090	144	118419											
GNB4	59345	broad.mit.edu	37	chr3	179132738	179132738	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggtctttaagttatatataGagcagatgttgtccaagcct	9	6	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179132738	C	C	179132738	3	2	132	1	0	0	0	0	1	0	0	0	6584	942	33	4	677	4	GNB4	3	179132738	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	21972398	179132738	18889692	145	118420											
YEATS2	55689	broad.mit.edu	37	chr3	183508768	183508768	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaaagccacagtatccGgtgagttgcattgtgatatt	12	7	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183508768	A	A	183508768	3	1	132	1	0	0	0	0	1	0	0	0	17599	1130	39	4	3175	4	YEATS2	3	183508768	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	4376030	183508768	14513662	146	118421											
FETUB	26998	broad.mit.edu	37	chr3	186370114	186370114	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacaaaccttcccaaggtGgaagaatcccagcagaaaaa	7	12	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186370114	T	T	186370114	2	4	132	1	0	0	0	0	0	0	0	1	5878	1335	47	2		2	FETUB	3	186370114	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2861346	186370114	11652316	147	118422											
ATP13A4	84239	broad.mit.edu	37	chr3	193159247	193159247	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggagattgtcaccctcttaGaacttacctttggcagtagg	11	9	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193159247	C	C	193159247	1	2	132	0	1	0	0	0	0	0	0	0	1130	957	33	4		4	ATP13A4	3	193159247	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	6789133	193159247	4863183	148	118423											
BOD1L	259282	broad.mit.edu	37	chr4	13605037	13605037	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttctcaattcatccttttGaacagtggcagaagtttttt	7	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13605037	C	C	13605037	3	2	132	1	0	0	0	0	1	0	0	0	1489	1299	45	4	5736	4	BOD1L	4	13605037	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08		13605037	177549239	149	118424											
BST1	683	broad.mit.edu	37	chr4	15717004	15717004	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaagaacaccagcacattCaaacacaagagagaatgcca	8	10	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15717004	G	G	15717004	1	3	132	0	1	0	0	0	0	0	0	0	1542	841	29	4		4	BST1	4	15717004	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2111967	15717004	175437272	150	118425											
NCAPG	64151	broad.mit.edu	37	chr4	17818967	17818967	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atatcttagagttgctccatCggttggatgtagaaaattct	9	6	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17818967	T	T	17818967	3	4	132	1	0	0	0	0	1	0	0	0	10302	875	31	4	881	4	NCAPG	4	17818967	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	2101963	17818967	173335309	151	118426											
KLHL5	51088	broad.mit.edu	37	chr4	39082722	39082722	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttcctaatgtgttcacaGattggtgctctcctctgtct	7	10	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39082722	C	C	39082722	5	2	132	1	0	0	0	0	0	0	1	0	8463	956	33	4	714	4	KLHL5	4	39082722	Splice_Site	SNP	G	TCGA-49-4486-01A-01D-1265-08	21263755	39082722	152071554	152	118427											
UGDH	7358	broad.mit.edu	37	chr4	39505518	39505518	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagccaatggtttgtagttCattgtggagcccatccagga	12	8	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39505518	T	T	39505518	3	4	132	1	0	0	0	0	1	0	0	0	17066	835	29	4	141	4	UGDH	4	39505518	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	422796	39505518	151648758	153	118428											
GABRA2	2555	broad.mit.edu	37	chr4	46307713	46307713	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaaatataagtgacctctGaagttgtatatgcatctata	6	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46307713	T	T	46307713	4	4	132	1	0	0	0	0	0	1	0	0	6221	1294	45	3	796	3	GABRA2	4	46307713	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	6802195	46307713	144846563	154	118429											
PDGFRA	5156	broad.mit.edu	37	chr4	54250187	54250187	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgttaaagtttcatcatgAatatacttctttgctaaaat	4	6	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54250187	G	G	54250187	1	3	132	0	1	0	0	0	0	0	0	0	11755	261	9	5		5	PDGFRA	4	54250187	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	7942474	54250187	136904089	155	118430											
REST	5978	broad.mit.edu	37	chr4	57777211	57777211	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctccagatatttacagttCaaataaagatcttccccctg	5	11	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57777211	T	T	57777211	3	4	132	1	0	0	0	0	1	0	0	0	13342	838	29	4	409	4	REST	4	57777211	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3527024	57777211	133377065	156	118431											
C4orf14	84273	broad.mit.edu	37	chr4	57839899	57839899	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgctaaagggcctctttgtTgcagaataaggaaggcagtc	12	8	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57839899	G	G	57839899	1	3	132	0	1	0	0	0	0	0	0	0	2274	1827	63	5		5	C4orf14	4	57839899	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	62688	57839899	133314377	157	118432											
MOBKL1A	92597	broad.mit.edu	37	chr4	71844961	71844961	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgatccagcttcaggagGaagcacatctaaatacatct	8	10	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71844961	T	T	71844961	4	4	132	1	0	0	0	0	0	1	0	0	9776	1175	41	3	544	3	MOBKL1A	4	71844961	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	14005062	71844961	119309315	158	118433											
ALB	213	broad.mit.edu	37	chr4	74280743	74280743	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagtctattttattttcatCttaattaggtttttgtatga	5	3	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74280743	G	G	74280743	1	3	132	0	1	0	0	0	0	0	0	0	486	928	32	4		4	ALB	4	74280743	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2435782	74280743	116873533	159	118434											
THAP9	79725	broad.mit.edu	37	chr4	83829085	83829085	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctcattcttccatcctcaGaacgtaagtgaattattttt	5	10	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83829085	A	A	83829085	3	1	132	1	0	0	0	0	1	0	0	0	15974	942	33	4	742	4	THAP9	4	83829085	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	9548342	83829085	107325191	160	118435											
AFF1	4299	broad.mit.edu	37	chr4	88015984	88015984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgtttaggtaaaaactGgggaccgacataaaagaact	11	5	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88015984	T	T	88015984	1	4	132	0	1	0	0	0	0	0	0	0	356	1363	47	2		2	AFF1	4	88015984	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	4186899	88015984	103138292	161	118436											
HERC3	8916	broad.mit.edu	37	chr4	89607914	89607914	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagagcttttagattacccCggggaggatgtggaggagac	15	7	0	3	rs61738481	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89607914	A	A	89607914	2	1	132	1	0	0	0	0	0	0	0	1	7126	639	23	1		1	HERC3	4	89607914	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1591930	89607914	101546362	162	118437											
SNCA	6622	broad.mit.edu	37	chr4	90743277	90743277	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtagcactttttcacaagGggagggtcaggtagccgttc	14	8	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90743277	A	A	90743277	1	1	132	0	1	0	0	0	0	0	0	0	14954	1247	43	4		4	SNCA	4	90743277	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1135363	90743277	100410999	163	118438											
DAPP1	27071	broad.mit.edu	37	chr4	100756627	100756627	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctttcagccccacccaggGatttccttgtcctaatgttg	7	14	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100756627	C	C	100756627	1	2	132	0	1	0	0	0	0	0	0	0	4272	1189	41	4		4	DAPP1	4	100756627	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	10013350	100756627	90397649	164	118439											
MANBA	4126	broad.mit.edu	37	chr4	103672874	103672874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgactggatcctttcagTtaaaggggcaaaggaatgga	13	5	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103672874	A	A	103672874	1	1	132	0	1	0	0	0	0	0	0	0	9311	1740	60	5		5	MANBA	4	103672874	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	2916247	103672874	87481402	165	118440											
NHEDC1	150159	broad.mit.edu	37	chr4	103822511	103822511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatttaggggtaaaaatgGggcataaagaaaaatattaa	10	2	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103822511	T	T	103822511	1	4	132	0	1	0	0	0	0	0	0	0	10495	1247	43	2		2	NHEDC1	4	103822511	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	149637	103822511	87331765	166	118441											
TET2	54790	broad.mit.edu	37	chr4	106155476	106155476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaaagacgtaacttcgGggtaagccaagaaagaaatc	12	6	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106155476	T	T	106155476	3	4	132	1	0	0	0	0	1	0	0	0	15892	1232	43	2	379	2	TET2	4	106155476	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2332965	106155476	84998800	167	118442											
ARHGEF38	54848	broad.mit.edu	37	chr4	106534678	106534678	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaattggtatgtttattctCttctcgagttctacaataca	6	7	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106534678	G	G	106534678	1	3	132	0	1	0	0	0	0	0	0	0	909	928	32	4		4	ARHGEF38	4	106534678	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	379202	106534678	84619598	168	118443											
EGF	1950	broad.mit.edu	37	chr4	110914579	110914579	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacttggctcggggatattCtataccctaatctctatttg	9	9	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110914579	G	G	110914579	1	3	132	0	1	0	0	0	0	0	0	0	5002	928	32	4		4	EGF	4	110914579	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	4379901	110914579	80239697	169	118444											
PHF17	79960	broad.mit.edu	37	chr4	129792527	129792527	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtgtgccttcttcctgcTcctcctcctcactggaaaac	7	15	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129792527	C	C	129792527	3	2	132	1	0	0	0	0	1	0	0	0	11923	1551	54	5	1704	5	PHF17	4	129792527	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	18877948	129792527	61361749	170	118445											
PCDH10	57575	broad.mit.edu	37	chr4	134111323	134111323	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggatatgctagtcaattcTacaggacttacctgaagcag	9	8	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134111323	C	C	134111323	1	2	132	0	1	0	0	0	0	0	0	0	11601	1537	53	5		5	PCDH10	4	134111323	3'UTR	SNP	T	TCGA-49-4486-01A-01D-1265-08	4318796	134111323	57042953	171	118446											
SH3D19	152503	broad.mit.edu	37	chr4	152096011	152096011	+	Frame_Shift_Del	DEL	G	-	-													ttgtgatgcccctgcgagtcGgggaggaacagtgacaggtt							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152096011	-	-	152096011	7	5	132	1	0	1	0	1	0	0	0	0	14362	1124	39	0	1927	0	SH3D19	4	152096011	Frame_Shift_Del	DEL	G	TCGA-49-4486-01A-01D-1265-08	17984688	152096011	39058265	172	118447											
TIGD4	201798	broad.mit.edu	37	chr4	153691681	153691681	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattttggtaccagacagtcGaagggtctactggtacacct	10	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153691681	A	A	153691681	3	1	132	1	0	0	0	0	1	0	0	0	16021	1059	37	4	1066	4	TIGD4	4	153691681	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1595670	153691681	37462595	173	118448											
TRIM2	23321	broad.mit.edu	37	chr4	154215474	154215474	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggctcccagaaatagattCtgctcttcagttcatctctg	7	12	5	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154215474	G	G	154215474	3	3	132	1	0	0	0	0	1	0	0	0	16618	913	32	4	641	4	TRIM2	4	154215474	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	523793	154215474	36938802	174	118449											
FGB	2244	broad.mit.edu	37	chr4	155491525	155491525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgcaaaacgtaacttgaCcaccgtagttctgtttctaa	6	10	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155491525	A	A	155491525	1	1	132	0	1	0	0	0	0	0	0	0	5888	522	18	3		3	FGB	4	155491525	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1276051	155491525	35662751	175	118450											
GUCY1A3	2982	broad.mit.edu	37	chr4	156634681	156634681	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcaggtcatcaccatgctCaatgcactgtacactcgctt	7	14	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156634681	G	G	156634681	2	3	132	1	0	0	0	0	0	0	0	1	6959	813	29	4		4	GUCY1A3	4	156634681	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1143156	156634681	34519595	176	118451											
TMEM144	55314	broad.mit.edu	37	chr4	159161476	159161476	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gactatgtgtttgcgcacttCagtggcatctttcttacaag	9	9	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159161476	T	T	159161476	2	4	132	1	0	0	0	0	0	0	0	1	16181	825	29	4		4	TMEM144	4	159161476	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	2526795	159161476	31992800	177	118452											
SH3RF1	57630	broad.mit.edu	37	chr4	170017808	170017808	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttcaagttctgcctcactCtgaggaggataggaaaccac	10	10	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170017808	G	G	170017808	3	3	132	1	0	0	0	0	1	0	0	0	14371	912	32	4	141	4	SH3RF1	4	170017808	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	10856332	170017808	21136468	178	118453											
NEIL3	55247	broad.mit.edu	37	chr4	178272775	178272775	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacaaagtcaggaatatatCttgctccatcttgatattcc	5	9	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178272775	G	G	178272775	1	3	132	0	1	0	0	0	0	0	0	0	10415	928	32	4		4	NEIL3	4	178272775	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	8254967	178272775	12881501	179	118454											
WWC2	80014	broad.mit.edu	37	chr4	184240642	184240642	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgagatgactagagcGggacatcctaccaaatccag	10	11	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184240642	T	T	184240642	1	4	132	0	1	0	0	0	0	0	0	0	17539	1131	39	1		1	WWC2	4	184240642	3'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	5967867	184240642	6913634	180	118455											
CLDN22	53842	broad.mit.edu	37	chr4	184243388	184243388	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggagtcaaagtccttGcattgcatccccacttcctc	8	13	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184243388	C	C	184243388	1	2	132	0	1	0	0	0	0	0	0	0	3514	1311	46	4		4	CLDN22	4	184243388	5'Flank	SNP	G	TCGA-49-4486-01A-01D-1265-08	2746	184243388	6910888	181	118456											
C4orf41	60684	broad.mit.edu	37	chr4	184618734	184618734	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaccaaggtatgtttctttGaggcatactagaaatcattt	7	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184618734	C	C	184618734	1	2	132	0	1	0	0	0	0	0	0	0	2293	1305	45	4		4	C4orf41	4	184618734	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	375346	184618734	6535542	182	118457											
CCDC111	201973	broad.mit.edu	37	chr4	185593715	185593715	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcgggattcttgcttcctCcactgcccaagtcgccagca	9	16	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185593715	T	T	185593715	1	4	132	0	1	0	0	0	0	0	0	0	2774	870	30	4		4	CCDC111	4	185593715	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	974981	185593715	5560561	183	118458											
ACSL1	2180	broad.mit.edu	37	chr4	185697770	185697770	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttctacaccctctaataaGagtttggccttctctggctt	6	11	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185697770	C	C	185697770	2	2	132	1	0	0	0	0	0	0	0	1	177	929	33	4		4	ACSL1	4	185697770	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	104055	185697770	5456506	184	118459											
TRIP13	9319	broad.mit.edu	37	chr5	895027	895027	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccagaaatgtgcagtctgTgtctattattgacacagaat	9	7	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	895027	C	C	895027	3	2	132	1	0	0	0	0	1	0	0	0	16682	1696	59	5	224	5	TRIP13	5	895027	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08		895027	180020233	185	118460											
NKD2	85409	broad.mit.edu	37	chr5	1038130	1038130	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggagaagcagttcctcaagtCccccaagggctccgggaagc	13	13	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1038130	T	T	1038130	3	4	132	1	0	0	0	0	1	0	0	0	10537	855	30	4	1036	4	NKD2	5	1038130	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	143103	1038130	179877130	186	118461											
CDH12	1010	broad.mit.edu	37	chr5	21883591	21883591	+	Intron	DEL	G	-	-													taaaggttggtcttcaggttGtggcagtcaaggctccaggg							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21883591	-	-	21883591	6	5	132	0	1	1	0	1	0	0	0	0	3128	1392	48	0		0	CDH12	5	21883591	Intron	DEL	G	TCGA-49-4486-01A-01D-1265-08	20845461	21883591	159031669	187	118462											
GOLPH3	64083	broad.mit.edu	37	chr5	32135777	32135777	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatcccctgttggagcatCtgacttacagattacctaaa	6	11	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32135777	A	A	32135777	3	1	132	1	0	0	0	0	1	0	0	0	6632	913	32	3	531	3	GOLPH3	5	32135777	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	10252186	32135777	148779483	188	118463											
ADAMTS12	81792	broad.mit.edu	37	chr5	33684050	33684050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcggccaccaccagtgtctCcacccatctctccttgctga	7	18	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33684050	T	T	33684050	3	4	132	1	0	0	0	0	1	0	0	0	257	864	30	4	4123	4	ADAMTS12	5	33684050	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1548273	33684050	147231210	189	118464											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881537	33881537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgcccactggcatctactCggactggacccaccacgtgg	10	15	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33881537	T	T	33881537	3	4	132	1	0	0	0	0	1	0	0	0	257	884	31	4	4700	4	ADAMTS12	5	33881537	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	197487	33881537	147033723	190	118465											
RPL37	6167	broad.mit.edu	37	chr5	40835302	40835302	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatctcgcttctgcggcCgagaccagaaagaccggaag	11	14	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40835302	A	A	40835302	1	1	132	0	1	0	0	0	0	0	0	0	13700	667	23	1		1	RPL37	5	40835302	5'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	6953765	40835302	140079958	191	118466											
NNT	23530	broad.mit.edu	37	chr5	43666708	43666708	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagggagggggagggggaggGagagaaggagagggagaggg	29	0	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43666708	C	C	43666708	1	2	132	0	1	0	0	0	0	0	0	0	10605	1189	41	4		4	NNT	5	43666708	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	2831406	43666708	137248552	192	118467											
DTWD2	285605	broad.mit.edu	37	chr5	118183674	118183674	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtacataaatttctaacacaGaagattctacttgtcacatg	5	8	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118183674	A	A	118183674	1	1	132	0	1	0	0	0	0	0	0	0	4832	957	33	4		4	DTWD2	5	118183674	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	74516966	118183674	62731586	193	118468											
DMXL1	1657	broad.mit.edu	37	chr5	118507008	118507008	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgatagtcaaaaatggtaCatgtctaaaactgtttttgg	8	5	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118507008	G	G	118507008	1	3	132	0	1	0	0	0	0	0	0	0	4634	493	17	4		4	DMXL1	5	118507008	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	323334	118507008	62408252	194	118469											
SRFBP1	153443	broad.mit.edu	37	chr5	121355964	121355964	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaccaaaatattggcgaaGaaaccaatacataattcaaa	5	7	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121355964	A	A	121355964	2	1	132	1	0	0	0	0	0	0	0	1	15262	933	33	4		4	SRFBP1	5	121355964	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2848956	121355964	59559296	195	118470											
GDF9	2661	broad.mit.edu	37	chr5	132197487	132197487	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgatgtccaactgcccttgGacagtcccctttacagtatc	7	15	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132197487	A	A	132197487	3	1	132	1	0	0	0	0	1	0	0	0	6383	1174	41	4	209	4	GDF9	5	132197487	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	10841523	132197487	48717773	196	118471											
SMAD5	4090	broad.mit.edu	37	chr5	135496714	135496714	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcccttatctccaaacagCccttatcccccttctcctgc	2	19	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135496714	T	T	135496714	2	4	132	1	0	0	0	0	0	0	0	1	14875	738	26	4		4	SMAD5	5	135496714	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	3299227	135496714	45418546	197	118472											
BRD8	10902	broad.mit.edu	37	chr5	137500375	137500375	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaaggtataaacctccatCtccccagccccgatctttct	4	16	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137500375	G	G	137500375	1	3	132	0	1	0	0	0	0	0	0	0	1515	928	32	4		4	BRD8	5	137500375	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2003661	137500375	43414885	198	118473											
BRD8	10902	broad.mit.edu	37	chr5	137504142	137504142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacagctctcaaacaccCacagaagtctccataccagt	4	17	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137504142	A	A	137504142	1	1	132	0	1	0	0	0	0	0	0	0	1515	609	21	2		2	BRD8	5	137504142	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3767	137504142	43411118	199	118474											
KDM3B	51780	broad.mit.edu	37	chr5	137760121	137760121	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtctctctttttgccagggaGatttagacatagtgaggtta	11	6	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137760121	C	C	137760121	1	2	132	0	1	0	0	0	0	0	0	0	8197	957	33	4		4	KDM3B	5	137760121	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	255979	137760121	43155139	200	118475											
MATR3	9782	broad.mit.edu	37	chr5	138661216	138661216	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaacacagaaccaggtgctGaatcttctgagaacgctgat	9	9	2	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138661216	C	C	138661216	3	2	132	1	0	0	0	0	1	0	0	0	9429	1291	45	4	2282	4	MATR3	5	138661216	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	901095	138661216	42254044	201	118476											
PCDHA8	56140	broad.mit.edu	37	chr5	140222271	140222271	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacgacaatgctccggcgttCgcgcagcccgagtacacggt	12	14	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140222271	T	T	140222271	2	4	132	1	0	0	0	0	0	0	0	1	11624	883	31	4		4	PCDHA8	5	140222271	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1561055	140222271	40692989	202	118477											
PCDHB3	56132	broad.mit.edu	37	chr5	140482231	140482231	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgctcctggtggacggcttCtcccagccctacctgcctct	10	17	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140482231	G	G	140482231	3	3	132	1	0	0	0	0	1	0	0	0	11637	912	32	4	2000	4	PCDHB3	5	140482231	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	259960	140482231	40433029	203	118478											
PCDHB10	56126	broad.mit.edu	37	chr5	140574422	140574422	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccccgggaccagtgagtTcaagttcttgaaaccagtta	11	10	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140574422	C	C	140574422	3	2	132	1	0	0	0	0	1	0	0	0	11629	1783	62	5	2299	5	PCDHB10	5	140574422	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	92191	140574422	40340838	204	118479											
PCDHB14	56122	broad.mit.edu	37	chr5	140603931	140603931	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacacatttttccatgcatCagaagatattcgtaaaacat	4	8	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140603931	T	T	140603931	3	4	132	1	0	0	0	0	1	0	0	0	11633	838	29	4	856	4	PCDHB14	5	140603931	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	29509	140603931	40311329	205	118480											
PCDHGB3	56102	broad.mit.edu	37	chr5	140750376	140750376	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctttagccaaaatatcactGagctggaaatcagcgaactg	8	10	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140750376	C	C	140750376	3	2	132	1	0	0	0	0	1	0	0	0	11658	1291	45	4	417	4	PCDHGB3	5	140750376	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	146445	140750376	40164884	206	118481											
ARHGAP26	23092	broad.mit.edu	37	chr5	142292638	142292638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatagtcacccttccactgcCcatggtcatgagcactcaga	7	14	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142292638	A	A	142292638	1	1	132	0	1	0	0	0	0	0	0	0	877	638	22	2		2	ARHGAP26	5	142292638	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1542262	142292638	38622622	207	118482											
RBM27	54439	broad.mit.edu	37	chr5	145631429	145631429	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtctccagccctacccctCtggttccaggtaagctttgc	8	16	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145631429	G	G	145631429	3	3	132	1	0	0	0	0	1	0	0	0	13235	912	32	4	1469	4	RBM27	5	145631429	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3338791	145631429	35283831	208	118483											
DPYSL3	1809	broad.mit.edu	37	chr5	146804535	146804535	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagacggtcactctagaaaaGaaggaaaacatgagttgtta	11	5	2	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146804535	C	C	146804535	1	2	132	0	1	0	0	0	0	0	0	0	4788	957	33	4		4	DPYSL3	5	146804535	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1173106	146804535	34110725	209	118484											
G3BP1	10146	broad.mit.edu	37	chr5	151173756	151173756	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattctatgttcacaatgatAtcttcagataccaagatgag	6	7	4	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151173756	G	G	151173756	3	3	132	1	0	0	0	0	1	0	0	0	6201	449	16	5	402	5	G3BP1	5	151173756	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	4369221	151173756	29741504	210	118485											
GABRG2	2566	broad.mit.edu	37	chr5	161575992	161575992	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaattaaatccacttataCctcctttcccattgctgaaa	4	11	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161575992	A	A	161575992	1	1	132	0	1	0	0	0	0	0	0	0	6232	522	18	3		3	GABRG2	5	161575992	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	10402236	161575992	19339268	211	118486											
SLIT3	6586	broad.mit.edu	37	chr5	168149326	168149326	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacctcagccggttgtagctCaggatcctgtggaaaaggag	13	10	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168149326	T	T	168149326	2	4	132	1	0	0	0	0	0	0	0	1	14855	813	29	4		4	SLIT3	5	168149326	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	6573334	168149326	12765934	212	118487											
HMP19	51617	broad.mit.edu	37	chr5	173473739	173473739	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccactgcttgccttaggtCtgggaagaaaggcgtaagga	13	9	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173473739	G	G	173473739	1	3	132	0	1	0	0	0	0	0	0	0	7312	928	32	4		4	HMP19	5	173473739	5'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	5324413	173473739	7441521	213	118488											
CDHR2	54825	broad.mit.edu	37	chr5	176016287	176016287	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacaagggtcctgaggattCagcttgggttccaagactga	12	8	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176016287	T	T	176016287	1	4	132	0	1	0	0	0	0	0	0	0	3149	841	29	4		4	CDHR2	5	176016287	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2542548	176016287	4898973	214	118489											
GPRIN1	114787	broad.mit.edu	37	chr5	176025029	176025029	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagaacccacttttccctCtgggatagcttctgcttttc	7	13	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176025029	T	T	176025029	3	4	132	1	0	0	0	0	1	0	0	0	6795	922	32	4	1223	4	GPRIN1	5	176025029	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	8742	176025029	4890231	215	118490											
LMAN2	10960	broad.mit.edu	37	chr5	176764569	176764569	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaagcagcccagcctgtGgggcgagcaggggcacccac	14	16	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176764569	T	T	176764569	1	4	132	0	1	0	0	0	0	0	0	0	8912	1363	47	2		2	LMAN2	5	176764569	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	739540	176764569	4150691	216	118491											
RNF130	55819	broad.mit.edu	37	chr5	179407141	179407141	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactgtaccttgtcacccttCtttactgtcctggttgtcaa	7	12	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179407141	A	A	179407141	3	1	132	1	0	0	0	0	1	0	0	0	13549	912	32	3	530	3	RNF130	5	179407141	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	2642572	179407141	1508119	217	118492											
EXOC2	55770	broad.mit.edu	37	chr6	637753	637753	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctcccctgattgtgaccttCgtccatggtatcccttcatt	6	14	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	637753	T	T	637753	2	4	132	1	0	0	0	0	0	0	0	1	5344	871	31	4		4	EXOC2	6	637753	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08		637753	170477314	218	118493											
MYLK4	340156	broad.mit.edu	37	chr6	2685595	2685595	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagctggatgaggttcgcGtggtccagctggttcatgac	14	9	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2685595	A	A	2685595	2	1	132	1	0	0	0	0	0	0	0	1	10153	1136	40	4		4	MYLK4	6	2685595	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2047842	2685595	168429472	219	118494											
BPHL	670	broad.mit.edu	37	chr6	3119649	3119649	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaactgaaaattcagaatCctgggcctcactcccagagg	11	11	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3119649	A	A	3119649	1	1	132	0	1	0	0	0	0	0	0	0	1498	870	30	3		3	BPHL	6	3119649	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	434054	3119649	167995418	220	118495											
TBC1D7	51256	broad.mit.edu	37	chr6	13306611	13306611	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcatttccagattcaaaatCaaatcaaagcacacttacat	2	10	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13306611	G	G	13306611	1	3	132	0	1	0	0	0	0	0	0	0	15746	841	29	4		4	TBC1D7	6	13306611	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	10186962	13306611	157808456	221	118496											
RNF144B	255488	broad.mit.edu	37	chr6	18406126	18406126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaccatactattaagGccctaatgtctttgtcatag	6	8	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18406126	T	T	18406126	1	4	132	0	1	0	0	0	0	0	0	0	13557	1218	42	3		3	RNF144B	6	18406126	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	5099515	18406126	152708941	222	118497											
OR2H1	26716	broad.mit.edu	37	chr6	29430097	29430097	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaggtcccatctctgattcGactctcctgtggagatacct	9	12	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29430097	C	C	29430097	3	2	132	1	0	0	0	0	1	0	0	0	11095	1058	37	4	553	4	OR2H1	6	29430097	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	11023971	29430097	141684970	223	118498											
HLA-G	3135	broad.mit.edu	37	chr6	29974804	29974804	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcacagactgaccgagtgAacctgcggaccctgctccgc	12	15	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29974804	G	G	29974804	1	3	132	0	1	0	0	0	0	0	0	0	7279	261	9	5		5	HLA-G	6	29974804	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	544707	29974804	141140263	224	118499											
HLA-G	3135	broad.mit.edu	37	chr6	29974845	29974845	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactacaaccagagcgaggcGggtgagtgaccccggcccgg	15	13	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29974845	C	C	29974845	1	2	132	0	1	0	0	0	0	0	0	0	7279	1131	39	4		4	HLA-G	6	29974845	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	41	29974845	141140222	225	118500											
FLOT1	10211	broad.mit.edu	37	chr6	30708997	30708997	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtgggccatgatggccctCtggtggccctctaacgtctc	12	13	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30708997	T	T	30708997	2	4	132	1	0	0	0	0	0	0	0	1	5994	912	32	4		4	FLOT1	6	30708997	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	734152	30708997	140406070	226	118501											
FKBPL	63943	broad.mit.edu	37	chr6	32097038	32097038	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgcccaggcagctgaagctCtgcttcctcaccttgacaca	9	15	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32097038	G	G	32097038	3	3	132	1	0	0	0	0	1	0	0	0	5973	922	32	4	533	4	FKBPL	6	32097038	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1388041	32097038	139018029	227	118502											
AGER	177	broad.mit.edu	37	chr6	32150196	32150196	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggggagaggagactatttCaaaacccttgtctttttgtc	10	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32150196	G	G	32150196	1	3	132	0	1	0	0	0	0	0	0	0	379	841	29	4		4	AGER	6	32150196	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	53158	32150196	138964871	228	118503											
AGER	177	broad.mit.edu	37	chr6	32150773	32150773	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagccctgtctcagggtgtCtcctggtctgttccttcaca	10	13	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32150773	G	G	32150773	3	3	132	1	0	0	0	0	1	0	0	0	379	913	32	4	731	4	AGER	6	32150773	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	577	32150773	138964294	229	118504											
AGER	177	broad.mit.edu	37	chr6	32150922	32150922	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccaggggcttcccatcCaagtgccagctaagagtccc	11	15	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32150922	T	T	32150922	2	4	132	1	0	0	0	0	0	0	0	1	379	593	21	4		4	AGER	6	32150922	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	149	32150922	138964145	230	118505											
RGL2	5863	broad.mit.edu	37	chr6	33263957	33263957	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccggagattgcggatgaggtCagcgctgccccccccaacac	12	16	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33263957	T	T	33263957	3	4	132	1	0	0	0	0	1	0	0	0	13385	826	29	4	1769	4	RGL2	6	33263957	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1113035	33263957	137851110	231	118506											
GRM4	2914	broad.mit.edu	37	chr6	34101351	34101351	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccccacggcctgggtgGgcatgggcagggcagcttca	17	13	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34101351	T	T	34101351	1	4	132	0	1	0	0	0	0	0	0	0	6865	1247	43	2		2	GRM4	6	34101351	5'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	837394	34101351	137013716	232	118507											
FGD2	221472	broad.mit.edu	37	chr6	36993601	36993601	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgctccgactaccgggccGaactgaaatacgacgacaac	11	13	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36993601	A	A	36993601	3	1	132	1	0	0	0	0	1	0	0	0	5890	1059	37	4	1546	4	FGD2	6	36993601	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2892250	36993601	134121466	233	118508											
DNAH8	1769	broad.mit.edu	37	chr6	38917469	38917469	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaacggcaaaaaccgcaatTacttttgtgccaacctaata	6	10	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38917469	C	C	38917469	1	2	132	0	1	0	0	0	0	0	0	0	4647	1769	61	5		5	DNAH8	6	38917469	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	1923868	38917469	132197598	234	118509											
PEX6	5190	broad.mit.edu	37	chr6	42932421	42932421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctggcctcaaactcctGggctcaagcgatcctcccac	9	17	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42932421	T	T	42932421	1	4	132	0	1	0	0	0	0	0	0	0	11845	1363	47	2		2	PEX6	6	42932421	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	4014952	42932421	128182646	235	118510											
TTBK1	84630	broad.mit.edu	37	chr6	43251404	43251404	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgtggaggagggggccCgagcgcccctggagaacggc	20	12	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43251404	T	T	43251404	4	4	132	1	0	0	0	0	0	1	0	0	16802	644	23	4	2976	4	TTBK1	6	43251404	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	318983	43251404	127863663	236	118511											
PKHD1	5314	broad.mit.edu	37	chr6	51609087	51609087	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactctagaatttaggtcttCaccagtacatttcattctca	4	10	5	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51609087	T	T	51609087	1	4	132	0	1	0	0	0	0	0	0	0	12066	841	29	4		4	PKHD1	6	51609087	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	8357683	51609087	119505980	237	118512											
GSTA3	2940	broad.mit.edu	37	chr6	52764737	52764737	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacagcttcacctactttttCgaaggcagggaaatagcgac	9	10	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52764737	G	G	52764737	3	3	132	1	0	0	0	0	1	0	0	0	6898	893	31	4	271	4	GSTA3	6	52764737	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1155650	52764737	118350330	238	118513											
FAM135A	57579	broad.mit.edu	37	chr6	71238217	71238217	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttttttcctaatagatctCatttagtttcatttagtctt	3	6	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71238217	G	G	71238217	1	3	132	0	1	0	0	0	0	0	0	0	5494	841	29	4		4	FAM135A	6	71238217	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	18473480	71238217	99876850	239	118514											
MYO6	4646	broad.mit.edu	37	chr6	76551060	76551060	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcttctgaagatattagaGaaaaacttcatttgagttca	8	5	3	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76551060	A	A	76551060	3	1	132	1	0	0	0	0	1	0	0	0	10175	943	33	4	811	4	MYO6	6	76551060	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	5312843	76551060	94564007	240	118515											
IMPG1	3617	broad.mit.edu	37	chr6	76660781	76660781	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagcttctgacagggaggtaGaggccatagcaggtggagac	17	7	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76660781	C	C	76660781	3	2	132	1	0	0	0	0	1	0	0	0	7798	942	33	4	1091	4	IMPG1	6	76660781	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	109721	76660781	94454286	241	118516											
PRSS35	167681	broad.mit.edu	37	chr6	84234492	84234492	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcacttcataggttatgccTggacttgaactctgtcaata	7	9	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84234492	A	A	84234492	1	1	132	0	1	0	0	0	0	0	0	0	12730	1595	55	5		5	PRSS35	6	84234492	3'UTR	SNP	T	TCGA-49-4486-01A-01D-1265-08	7573711	84234492	86880575	242	118517											
MDN1	23195	broad.mit.edu	37	chr6	90397931	90397931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtatctcagtaggaatacCagtgatcctaagtcacaggg	12	8	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90397931	A	A	90397931	1	1	132	0	1	0	0	0	0	0	0	0	9508	609	21	2		2	MDN1	6	90397931	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	6163439	90397931	80717136	243	118518											
AIM1	202	broad.mit.edu	37	chr6	106968226	106968226	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctcaaagtcagggcagcaGaacacccctgatggctgaat	12	11	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106968226	A	A	106968226	3	1	132	1	0	0	0	0	1	0	0	0	430	942	33	4	1925	4	AIM1	6	106968226	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	16570295	106968226	64146841	244	118519											
REV3L	5980	broad.mit.edu	37	chr6	111695225	111695225	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctgaagctgtatttcCcggagaacaagtttcactgt	8	10	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111695225	A	A	111695225	4	1	132	1	0	0	0	0	0	1	0	0	13348	632	22	2	5139	2	REV3L	6	111695225	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4726999	111695225	59419842	245	118520											
VGLL2	245806	broad.mit.edu	37	chr6	117589584	117589584	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaacatttcagcagggccctGagccaacccagcagctactc	9	15	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117589584	A	A	117589584	2	1	132	1	0	0	0	0	0	0	0	1	17286	1277	45	4		4	VGLL2	6	117589584	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	5894359	117589584	53525483	246	118521											
MCM9	254394	broad.mit.edu	37	chr6	119245037	119245037	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggagacgaagacaagcctGagaggcaagtgaatttagag	14	5	0	5			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119245037	C	C	119245037	4	2	132	1	0	0	0	0	0	1	0	0	9487	1294	45	4	635	4	MCM9	6	119245037	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1655453	119245037	51870030	247	118522											
BCLAF1	9774	broad.mit.edu	37	chr6	136588435	136588435	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctatctaaatctcatggCcattgaggatgaaaaggatg	9	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136588435	T	T	136588435	1	4	132	0	1	0	0	0	0	0	0	0	1388	754	26	4		4	BCLAF1	6	136588435	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	17343398	136588435	34526632	248	118523											
KATNA1	11104	broad.mit.edu	37	chr6	149954192	149954192	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accacatcaagatattctatCaaaatgttaataacagttta	3	7	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149954192	G	G	149954192	1	3	132	0	1	0	0	0	0	0	0	0	8054	841	29	4		4	KATNA1	6	149954192	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	13365757	149954192	21160875	249	118524											
MTHFD1L	25902	broad.mit.edu	37	chr6	151206708	151206708	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggttaatatatgtacattAcacgtgagtgatttttttgg	11	3	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151206708	T	T	151206708	1	4	132	0	1	0	0	0	0	0	0	0	10022	406	14	5		5	MTHFD1L	6	151206708	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	1252516	151206708	19908359	250	118525											
VIP	7432	broad.mit.edu	37	chr6	153076459	153076459	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttcagtaaactcttgggtCaactttctgccaaaaagtac	6	10	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153076459	T	T	153076459	4	4	132	1	0	0	0	0	0	1	0	0	17294	827	29	4	296	4	VIP	6	153076459	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1869751	153076459	18038608	251	118526											
FBXO5	26271	broad.mit.edu	37	chr6	153296529	153296529	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttatgcaagcgcttgctttCagtttcaagttgtacaatcc	8	9	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153296529	T	T	153296529	3	4	132	1	0	0	0	0	1	0	0	0	5815	835	29	4	1028	4	FBXO5	6	153296529	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	220070	153296529	17818538	252	118527											
SYNJ2	8871	broad.mit.edu	37	chr6	158487540	158487540	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacaaatttcaagcggatCcggattgctatggggacctg	11	9	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158487540	A	A	158487540	2	1	132	1	0	0	0	0	0	0	0	1	15572	845	30	3		3	SYNJ2	6	158487540	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	5191011	158487540	12627527	253	118528											
SYNJ2	8871	broad.mit.edu	37	chr6	158499459	158499459	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaatacaccaaagaacaaaGaatgatggaacaaatatctg	6	7	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158499459	C	C	158499459	1	2	132	0	1	0	0	0	0	0	0	0	15572	957	33	4		4	SYNJ2	6	158499459	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	11919	158499459	12615608	254	118529											
MAP3K4	4216	broad.mit.edu	37	chr6	161470151	161470151	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caattaacgaccaggacttcTttttatatacagcccgtcaa	5	11	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161470151	G	G	161470151	3	3	132	1	0	0	0	0	1	0	0	0	9344	1609	56	5	857	5	MAP3K4	6	161470151	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	2970692	161470151	9644916	255	118530											
THBS2	7058	broad.mit.edu	37	chr6	169640512	169640512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagtgtccgatggtggCctcttcccccaagagccgtg	12	14	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169640512	A	A	169640512	1	1	132	0	1	0	0	0	0	0	0	0	15977	754	26	3		3	THBS2	6	169640512	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	8170361	169640512	1474555	256	118531											
EIF3B	8662	broad.mit.edu	37	chr7	2403186	2403186	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagatgtggactgaacttgtCatatctttaagagcaatagt	9	5	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2403186	T	T	2403186	1	4	132	0	1	0	0	0	0	0	0	0	5053	841	29	4		4	EIF3B	7	2403186	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08		2403186	156735477	257	118532											
THSD7A	221981	broad.mit.edu	37	chr7	11501737	11501737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagctgaatgatgaccCgatgcctagactgcttcctg	11	12	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11501737	A	A	11501737	3	1	132	1	0	0	0	0	1	0	0	0	16002	652	23	1	2643	1	THSD7A	7	11501737	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	9098551	11501737	147636926	258	118533											
ABCB5	340273	broad.mit.edu	37	chr7	20685242	20685242	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcttagtatttgaagacaAatttttaaaaatacagagat	5	5	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20685242	G	G	20685242	1	3	132	0	1	0	0	0	0	0	0	0	44	29	1	5		5	ABCB5	7	20685242	5'Flank	SNP	A	TCGA-49-4486-01A-01D-1265-08	9183505	20685242	138453421	259	118534											
DNAH11	8701	broad.mit.edu	37	chr7	21923947	21923947	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgttatctctttggtgagatCatgtatggaggccacatcac	10	9	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21923947	T	T	21923947	2	4	132	1	0	0	0	0	0	0	0	1	4639	816	29	4		4	DNAH11	7	21923947	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1238705	21923947	137214716	260	118535											
AVL9	23080	broad.mit.edu	37	chr7	32801145	32801145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgctggagaactgccgcGcctgcagttcgtgcaccttt	11	14	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32801145	T	T	32801145	1	4	132	0	1	0	0	0	0	0	0	0	1233	1102	38	3		3	AVL9	7	32801145	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	10877198	32801145	126337518	261	118536											
BBS9	27241	broad.mit.edu	37	chr7	33644702	33644702	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttgttttccaatttcttCattcttccccttagcactgg	5	12	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33644702	T	T	33644702	1	4	132	0	1	0	0	0	0	0	0	0	1347	841	29	4		4	BBS9	7	33644702	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	843557	33644702	125493961	262	118537											
AOAH	313	broad.mit.edu	37	chr7	36656065	36656065	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtctcccagcaaaatgattCccctgggctgtgaacctagg	10	12	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36656065	T	T	36656065	3	4	132	1	0	0	0	0	1	0	0	0	728	855	30	4	1345	4	AOAH	7	36656065	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3011363	36656065	122482598	263	118538											
ELMO1	9844	broad.mit.edu	37	chr7	37136224	37136224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaataagtatacttacGcaactcgcccactttcaaga	7	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37136224	A	A	37136224	3	1	132	1	0	0	0	0	1	0	0	0	5107	1101	38	4	915	4	ELMO1	7	37136224	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	480159	37136224	122002439	264	118539											
C7orf36	57002	broad.mit.edu	37	chr7	39610115	39610115	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatttttaggaaggttataGagatggaatagatgctggca	12	2	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39610115	C	C	39610115	3	2	132	1	0	0	0	0	1	0	0	0	2415	942	33	4	146	4	C7orf36	7	39610115	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2473891	39610115	119528548	265	118540											
CDK13	8621	broad.mit.edu	37	chr7	40134077	40134077	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggatcctcttctttctcttCtgctccttatgttagcaatg	6	11	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40134077	G	G	40134077	3	3	132	1	0	0	0	0	1	0	0	0	3159	913	32	4	4091	4	CDK13	7	40134077	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	523962	40134077	119004586	266	118541											
EGFR	1956	broad.mit.edu	37	chr7	55218936	55218936	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcccgggaaagggcgtcatCagtttctcatcatttcactg	11	11	5	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55218936	T	T	55218936	1	4	132	0	1	0	0	0	0	0	0	0	5007	841	29	4		4	EGFR	7	55218936	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	15084859	55218936	103919727	267	118542											
GUSB	2990	broad.mit.edu	37	chr7	65440961	65440961	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagggtcaccacatgggGgcaaaagacctcccttaggc	12	13	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65440961	A	A	65440961	1	1	132	0	1	0	0	0	0	0	0	0	6967	1247	43	4		4	GUSB	7	65440961	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	10222025	65440961	93697702	268	118543											
TBL2	26608	broad.mit.edu	37	chr7	72987588	72987588	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcagcattaactcattgagGaaatagaactggatctttcc	9	8	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72987588	A	A	72987588	1	1	132	0	1	0	0	0	0	0	0	0	15764	1189	41	4		4	TBL2	7	72987588	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	7546627	72987588	86151075	269	118544											
AKAP9	10142	broad.mit.edu	37	chr7	91712592	91712592	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagaaaaagaagatgagactGaggtacaagaaagcaaaaag	11	3	0	6			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91712592	T	T	91712592	4	4	132	1	0	0	0	0	0	1	0	0	459	1291	45	3	8399	3	AKAP9	7	91712592	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	18725004	91712592	67426071	270	118545											
CASD1	64921	broad.mit.edu	37	chr7	94146906	94146906	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataccttctctcaagtggCagatttcttggagagaaagt	10	7	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94146906	A	A	94146906	2	1	132	1	0	0	0	0	0	0	0	1	2690	697	25	3		3	CASD1	7	94146906	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	2434314	94146906	64991757	271	118546											
DYNC1I1	1780	broad.mit.edu	37	chr7	95614143	95614143	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagcccctccaagagagttGacagaggaagaaaaacagca	10	9	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95614143	C	C	95614143	3	2	132	1	0	0	0	0	1	0	0	0	4882	1281	45	4	674	4	DYNC1I1	7	95614143	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1467237	95614143	63524520	272	118547											
ARPC1A	10552	broad.mit.edu	37	chr7	98957388	98957388	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccgtctgtagagaggtggtCaggtgacaaggtgccttcct	15	9	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98957388	A	A	98957388	1	1	132	0	1	0	0	0	0	0	0	0	973	841	29	3		3	ARPC1A	7	98957388	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3343245	98957388	60181275	273	118548											
STAG3	10734	broad.mit.edu	37	chr7	99784022	99784022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagacatttcctaaataaaGgaagatggtaaagcattaga	8	4	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99784022	T	T	99784022	1	4	132	0	1	0	0	0	0	0	0	0	15362	1015	35	2		2	STAG3	7	99784022	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	826634	99784022	59354641	274	118549											
ZAN	7455	broad.mit.edu	37	chr7	100386737	100386737	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttattccactctctgcaCggagacatatggagatgact	8	10	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100386737	G	G	100386737	1	3	132	0	1	0	0	0	0	0	0	0	17640	551	19	4		4	ZAN	7	100386737	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	602715	100386737	58751926	275	118550											
MUC17	140453	broad.mit.edu	37	chr7	100683576	100683576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaccaggacacctgtcaCcacttctgctgaagctagtt	8	13	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100683576	A	A	100683576	3	1	132	1	0	0	0	0	1	0	0	0	10068	507	18	3	8889	3	MUC17	7	100683576	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	296839	100683576	58455087	276	118551											
IQUB	154865	broad.mit.edu	37	chr7	123101650	123101650	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttataaaatttcaatgggtCttgagggacctaaataaata	7	5	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123101650	A	A	123101650	3	1	132	1	0	0	0	0	1	0	0	0	7890	913	32	3	619	3	IQUB	7	123101650	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	22418074	123101650	36037013	277	118552											
NUP205	23165	broad.mit.edu	37	chr7	135310104	135310104	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacttatgaatctaaaatgGtaaggctttctagacatttg	7	5	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135310104	T	T	135310104	5	4	132	1	0	0	0	0	0	0	1	0	10854	1275	44	3	4798	3	NUP205	7	135310104	Splice_Site	SNP	G	TCGA-49-4486-01A-01D-1265-08	12208454	135310104	23828559	278	118553											
PTN	5764	broad.mit.edu	37	chr7	136912956	136912956	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtttgctcttggtagttctCttggtaaactgagaaaacac	9	7	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136912956	G	G	136912956	1	3	132	0	1	0	0	0	0	0	0	0	12874	928	32	4		4	PTN	7	136912956	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1602852	136912956	22225707	279	118554											
SVOPL	136306	broad.mit.edu	37	chr7	138347763	138347763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaacagtgataaggttgCccccaaaagaatacacaaaa	8	8	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138347763	A	A	138347763	1	1	132	0	1	0	0	0	0	0	0	0	15542	754	26	3		3	SVOPL	7	138347763	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1434807	138347763	20790900	280	118555											
NDUFB2	4708	broad.mit.edu	37	chr7	140402885	140402885	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaatagcttgtttatttttCtgttgtagaccatttttctg	6	5	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140402885	T	T	140402885	1	4	132	0	1	0	0	0	0	0	0	0	10376	928	32	4		4	NDUFB2	7	140402885	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2055122	140402885	18735778	281	118556											
GSTK1	373156	broad.mit.edu	37	chr7	142960620	142960620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagcatggggcccctgcCgcgcaccgtggagctcttct	13	16	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142960620	A	A	142960620	3	1	132	1	0	0	0	0	1	0	0	0	6902	652	23	1	16	1	GSTK1	7	142960620	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	2557735	142960620	16178043	282	118557											
SSPO	23145	broad.mit.edu	37	chr7	149495086	149495086	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtgagcgcccaggctgtAtcctcaggggatgggagctg	16	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149495086	G	G	149495086	1	3	132	0	1	0	0	0	0	0	0	0	15307	464	16	5		5	SSPO	7	149495086	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	6534466	149495086	9643577	283	118558											
SLC4A2	6522	broad.mit.edu	37	chr7	150773144	150773144	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcacggccctgcagctgctCtgcctggccctgctctgggc	12	17	3	0	rs150666646		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150773144	G	G	150773144	2	3	132	1	0	0	0	0	0	0	0	1	14768	900	32	4		4	SLC4A2	7	150773144	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1278058	150773144	8365519	284	118559											
PTPRN2	5799	broad.mit.edu	37	chr7	157387990	157387990	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggcgatgtacgcggggttCctcgggtcgtgatccatctg	16	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157387990	T	T	157387990	2	4	132	1	0	0	0	0	0	0	0	1	12916	854	30	4		4	PTPRN2	7	157387990	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	6614846	157387990	1750673	285	118560											
DLGAP2	9228	broad.mit.edu	37	chr8	1617977	1617977	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgaaatgtgctccaaagcCgcgtccgcatgactttcatt	8	13	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1617977	T	T	1617977	1	4	132	0	1	0	0	0	0	0	0	0	4600	667	23	4		4	DLGAP2	8	1617977	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08		1617977	144746045	286	118561											
MTMR7	9108	broad.mit.edu	37	chr8	17163501	17163501	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attagagactttttaaggcaGatttatttttaaagtacaaa	6	3	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17163501	A	A	17163501	1	1	132	0	1	0	0	0	0	0	0	0	10042	957	33	4		4	MTMR7	8	17163501	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	15545524	17163501	129200521	287	118562											
CLU	1191	broad.mit.edu	37	chr8	27462598	27462598	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcaagctgcggacgatGcgggacttgggaaagaagaa	16	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27462598	A	A	27462598	2	1	132	1	0	0	0	0	0	0	0	1	3600	1306	46	4		4	CLU	8	27462598	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	10299097	27462598	118901424	288	118563											
ANK1	286	broad.mit.edu	37	chr8	41552591	41552591	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccattctcagcctcttgGggcttcccaaacttcaggtg	10	13	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41552591	A	A	41552591	1	1	132	0	1	0	0	0	0	0	0	0	620	1247	43	4		4	ANK1	8	41552591	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	14089993	41552591	104811431	289	118564											
FNTA	2339	broad.mit.edu	37	chr8	42919285	42919285	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccgagctgtcctgcagcgtGatgaaagaagtgaacgagct	13	9	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42919285	C	C	42919285	3	2	132	1	0	0	0	0	1	0	0	0	6035	1290	45	4	338	4	FNTA	8	42919285	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1366694	42919285	103444737	290	118565											
SLCO5A1	81796	broad.mit.edu	37	chr8	70617196	70617196	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggtatgaggctgactgcaGatgcacaaacaccacagggc	14	10	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70617196	C	C	70617196	1	2	132	0	1	0	0	0	0	0	0	0	14845	957	33	4		4	SLCO5A1	8	70617196	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	27697911	70617196	75746826	291	118566											
SLCO5A1	81796	broad.mit.edu	37	chr8	70617448	70617448	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaataccaacaccagcactGgggacgataataacccctgg	8	13	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70617448	A	A	70617448	2	1	132	1	0	0	0	0	0	0	0	1	14845	1335	47	4		4	SLCO5A1	8	70617448	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	252	70617448	75746574	292	118567											
ZFHX4	79776	broad.mit.edu	37	chr8	77764427	77764427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccagatttgggcttgcCaggctctgccacatttggga	15	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764427	A	A	77764427	3	1	132	1	0	0	0	0	1	0	0	0	17761	594	21	2	5304	2	ZFHX4	8	77764427	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	7146979	77764427	68599595	293	118568											
MTERFD1	51001	broad.mit.edu	37	chr8	97256212	97256212	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgcacaaaatcaaacgtctCggtaagtttcattttatttg	7	7	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97256212	A	A	97256212	4	1	132	1	0	0	0	0	0	1	0	0	10013	893	31	3	267	3	MTERFD1	8	97256212	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	19491785	97256212	49107810	294	118569											
PTDSS1	9791	broad.mit.edu	37	chr8	97316287	97316287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacattcataccaccaccGggaagatcaagagagctgtt	11	10	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97316287	T	T	97316287	3	4	132	1	0	0	0	0	1	0	0	0	12842	1116	39	1	798	1	PTDSS1	8	97316287	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	60075	97316287	49047735	295	118570											
KLF10	7071	broad.mit.edu	37	chr8	103663208	103663208	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaaagtgcaaggattatgGcactcgtgagcggcctccaa	11	11	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103663208	A	A	103663208	1	1	132	0	1	0	0	0	0	0	0	0	8409	1218	42	4		4	KLF10	8	103663208	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	6346921	103663208	42700814	296	118571											
ENPP2	5168	broad.mit.edu	37	chr8	120580408	120580408	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtgtattaggtaaatattgGacttacgtttgaaagcagga	11	3	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120580408	C	C	120580408	1	2	132	0	1	0	0	0	0	0	0	0	5172	1189	41	4		4	ENPP2	8	120580408	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	16917200	120580408	25783614	297	118572											
COL14A1	7373	broad.mit.edu	37	chr8	121238940	121238940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagggtgacctggcatcccCtctcagctgatgaagggcta	12	11	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121238940	A	A	121238940	3	1	132	1	0	0	0	0	1	0	0	0	3703	681	24	2	1997	2	COL14A1	8	121238940	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	658532	121238940	25125082	298	118573											
FER1L6	654463	broad.mit.edu	37	chr8	124989637	124989637	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcccttccatgactcatgtCctcctggctgtgtttttagg	9	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124989637	T	T	124989637	1	4	132	0	1	0	0	0	0	0	0	0	5872	870	30	4		4	FER1L6	8	124989637	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3750697	124989637	21374385	299	118574											
FAM83H	286077	broad.mit.edu	37	chr8	144812586	144812586	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttccagctcttcagggcacAggaagtctggtgccccctcg	12	14	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144812586	C	C	144812586	3	2	132	1	0	0	0	0	1	0	0	0	5693	188	7	5	3388	5	FAM83H	8	144812586	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	19822949	144812586	1551436	300	118575											
PLEC	5339	broad.mit.edu	37	chr8	144991630	144991630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcttcttctccttcagcGgcaagagacacaggcccgtc	9	17	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144991630	T	T	144991630	3	4	132	1	0	0	0	0	1	0	0	0	12147	1116	39	1	1288	1	PLEC	8	144991630	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	179044	144991630	1372392	301	118576											
FBXL6	26233	broad.mit.edu	37	chr8	145581359	145581359	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccgcccttggcaggccgGccgaccagcggggacgacag	15	17	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145581359	A	A	145581359	2	1	132	1	0	0	0	0	0	0	0	1	5780	1190	42	4		4	FBXL6	8	145581359	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	589729	145581359	782663	302	118577											
RPL8	6132	broad.mit.edu	37	chr8	146015223	146015223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcacagtcttggttcccCggagacgtccagtccggcgg	13	15	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146015223	A	A	146015223	3	1	132	1	0	0	0	0	1	0	0	0	13713	652	23	1	37	1	RPL8	8	146015223	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	433864	146015223	348799	303	118578											
DOCK8	81704	broad.mit.edu	37	chr9	311897	311897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagacatccaagattcttcGgttctcattttagacttgcc	7	10	2	3	rs147381956	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	311897	T	T	311897	1	4	132	0	1	0	0	0	0	0	0	0	4733	1131	39	1		1	DOCK8	9	311897	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08		311897	140901534	304	118579											
RFX3	5991	broad.mit.edu	37	chr9	3293152	3293152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaagaggcagcattgactGggtccagtttgtgttcctga	12	8	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3293152	T	T	3293152	3	4	132	1	0	0	0	0	1	0	0	0	13372	1348	47	2	1797	2	RFX3	9	3293152	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2981255	3293152	137920279	305	118580											
PSIP1	11168	broad.mit.edu	37	chr9	15486913	15486913	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caacatcagatgatgcatttGattgtttagttgctgcctgt	9	7	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15486913	C	C	15486913	4	2	132	1	0	0	0	0	0	1	0	0	12769	1294	45	4	1364	4	PSIP1	9	15486913	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	12193761	15486913	125726518	306	118581											
BNC2	54796	broad.mit.edu	37	chr9	16437286	16437286	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgctggaaggattgctgttCtctaagtgagcaaggaggct	14	6	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16437286	T	T	16437286	2	4	132	1	0	0	0	0	0	0	0	1	1481	912	32	4		4	BNC2	9	16437286	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	950373	16437286	124776145	307	118582											
IFNA14	3448	broad.mit.edu	37	chr9	21231577	21231577	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggcagcagaggagcactCtgtggggtagacgctgaaga	16	9	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21231577	G	G	21231577	1	3	132	0	1	0	0	0	0	0	0	0	7604	928	32	4		4	IFNA14	9	21231577	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	4794291	21231577	119981854	308	118583											
MTAP	4507	broad.mit.edu	37	chr9	21862072	21862072	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttccagtcattttgggaattCctgcttaacttgaaaaaaat	6	7	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21862072	G	G	21862072	1	3	132	0	1	0	0	0	0	0	0	0	10005	870	30	4		4	MTAP	9	21862072	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	630495	21862072	119351359	309	118584											
TOPORS	10210	broad.mit.edu	37	chr9	32543115	32543115	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgaagaatcatcactgtCattatttaggtcgtcattgg	8	7	5	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32543115	G	G	32543115	3	3	132	1	0	0	0	0	1	0	0	0	16494	826	29	4	1733	4	TOPORS	9	32543115	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	10681043	32543115	108670316	310	118585											
UBAP1	51271	broad.mit.edu	37	chr9	34242054	34242054	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcccagatgccttccctctCtgttttgtctgtgtgcacag	8	14	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34242054	G	G	34242054	3	3	132	1	0	0	0	0	1	0	0	0	16962	913	32	4	1278	4	UBAP1	9	34242054	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1698939	34242054	106971377	311	118586											
VCP	7415	broad.mit.edu	37	chr9	35066895	35066895	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaagggcctggcacagaTagctgatagtaagtgaaaaa	11	7	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35066895	C	C	35066895	1	2	132	0	1	0	0	0	0	0	0	0	17267	1421	49	5		5	VCP	9	35066895	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	824841	35066895	106146536	312	118587											
RUSC2	9853	broad.mit.edu	37	chr9	35561270	35561270	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acgagtgctggggcgagctgGaggagactggctgcgctgca	19	9	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35561270	C	C	35561270	3	2	132	1	0	0	0	0	1	0	0	0	13862	1174	41	4	4484	4	RUSC2	9	35561270	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	494375	35561270	105652161	313	118588											
TLN1	7094	broad.mit.edu	37	chr9	35707217	35707217	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctctaacattgtcttggCagagatcacaatgggctcca	8	11	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35707217	T	T	35707217	3	4	132	1	0	0	0	0	1	0	0	0	16070	710	25	4	2902	4	TLN1	9	35707217	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	145947	35707217	105506214	314	118589											
NPR2	4882	broad.mit.edu	37	chr9	35794089	35794089	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaggcccaggccctcagaGaggcctttcaggtatcattt	10	12	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35794089	C	C	35794089	3	2	132	1	0	0	0	0	1	0	0	0	10690	943	33	4	868	4	NPR2	9	35794089	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	86872	35794089	105419342	315	118590											
GNAQ	2776	broad.mit.edu	37	chr9	80430572	80430572	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgatattctcgtcgtctatCatagcattcctggattccag	7	10	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80430572	G	G	80430572	3	3	132	1	0	0	0	0	1	0	0	0	6573	826	29	4	663	4	GNAQ	9	80430572	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	44636483	80430572	60782859	316	118591											
TGFBR1	7046	broad.mit.edu	37	chr9	101908883	101908883	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaaattgctcgacgatgttCcattggtggtaaattgctct	11	7	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101908883	T	T	101908883	3	4	132	1	0	0	0	0	1	0	0	0	15944	855	30	4	1273	4	TGFBR1	9	101908883	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	21478311	101908883	39304548	317	118592											
PPP3R2	5535	broad.mit.edu	37	chr9	104357089	104357090	+	Missense_Mutation	DNP	TC	AT	AT													ggacatgaactcctccacgcTcagagaccctgatttgtcca							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	104357090	AT	AT	104357089	3	1	132	1	0	0	0	0	1	0	0	0	12502	1551	54	5	401	5	PPP3R2	9	104357089	Missense_Mutation	DNP	TC	TCGA-49-4486-01A-01D-1265-08	2448206	104357089	36856342	318	118593											
OR13C8	138802	broad.mit.edu	37	chr9	107332060	107332060	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtatgacagggtcgaatctGattgttctggttattccatt	10	6	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107332060	C	C	107332060	2	2	132	1	0	0	0	0	0	0	0	1	11032	1277	45	4		4	OR13C8	9	107332060	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2974971	107332060	33881371	319	118594			1	95		3	3	250	G		1.290696e-05
OR13C8	138802	broad.mit.edu	37	chr9	107332126	107332126	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttattgttgccactattctGaggattccttccactgaagg	8	9	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107332126	A	A	107332126	2	1	132	1	0	0	0	0	0	0	0	1	11032	1277	45	4		4	OR13C8	9	107332126	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	66	107332126	33881305	320	118595			1	95		3	3	250	G		1.290696e-05
OR13C8	138802	broad.mit.edu	37	chr9	107332309	107332309	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccttttctatggagtgatGactcccatgcttaatcctct	6	12	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107332309	A	A	107332309	3	1	132	1	0	0	0	0	1	0	0	0	11032	1290	45	4	863	4	OR13C8	9	107332309	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	183	107332309	33881122	321	118596			1	95		3	3	250	G		1.290696e-05
OR13C9	286362	broad.mit.edu	37	chr9	107379953	107379953	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacagctagaatttcacatGagaaatgattgatgacattc	8	6	1	6			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107379953	A	A	107379953	3	1	132	1	0	0	0	0	1	0	0	0	11033	1294	45	4	426	4	OR13C9	9	107379953	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	47644	107379953	33833478	322	118597											
EPB41L4B	54566	broad.mit.edu	37	chr9	112015721	112015721	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaatgaaaaacacacaacCtttgaacgttgaatgtctcc	6	9	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112015721	G	G	112015721	3	3	132	1	0	0	0	0	1	0	0	0	5198	695	24	4	1635	4	EPB41L4B	9	112015721	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4635768	112015721	29197710	323	118598											
LHX6	26468	broad.mit.edu	37	chr9	124988802	124988802	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacggggcggggacggaggtCggctcagcgcgggcctcttt	20	11	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124988802	G	G	124988802	1	3	132	0	1	0	0	0	0	0	0	0	8847	899	31	4		4	LHX6	9	124988802	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	12973081	124988802	16224629	324	118599											
MAPKAP1	79109	broad.mit.edu	37	chr9	128434782	128434782	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaccatctcacacattccCgtgtcatcactggtcacatg	6	14	4	1	rs138237151	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128434782	A	A	128434782	2	1	132	1	0	0	0	0	0	0	0	1	9380	639	23	1		1	MAPKAP1	9	128434782	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	3445980	128434782	12778649	325	118600											
LMX1B	4010	broad.mit.edu	37	chr9	129453345	129453345	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagccccgacgagtccgactCcggtgaggcctggcctgagc	15	15	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129453345	G	G	129453345	3	3	132	1	0	0	0	0	1	0	0	0	8936	855	30	4	567	4	LMX1B	9	129453345	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1018563	129453345	11760086	326	118601											
FAM129B	64855	broad.mit.edu	37	chr9	130294103	130294103	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaggtcctcagggatgctGatgcatcacgatccttcccc	10	13	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130294103	A	A	130294103	1	1	132	0	1	0	0	0	0	0	0	0	5483	1305	45	4		4	FAM129B	9	130294103	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	840758	130294103	10919328	327	118602											
PIP5KL1	138429	broad.mit.edu	37	chr9	130688207	130688207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagaacaagggggctgccCtcaggggcgggatccaccca	14	14	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130688207	A	A	130688207	3	1	132	1	0	0	0	0	1	0	0	0	12037	680	24	2	494	2	PIP5KL1	9	130688207	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	394104	130688207	10525224	328	118603											
SPTAN1	6709	broad.mit.edu	37	chr9	131346541	131346541	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacccaaagtaaagtctgctCtgtccttttgcattcccagg	7	13	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131346541	G	G	131346541	1	3	132	0	1	0	0	0	0	0	0	0	15235	928	32	4		4	SPTAN1	9	131346541	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	658334	131346541	9866890	329	118604											
PKN3	29941	broad.mit.edu	37	chr9	131481807	131481807	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttagcctgtgagcttggctCtgcatgcagtcaaatggcgt	12	10	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131481807	G	G	131481807	1	3	132	0	1	0	0	0	0	0	0	0	12076	928	32	4		4	PKN3	9	131481807	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	135266	131481807	9731624	330	118605											
OBP2B	29989	broad.mit.edu	37	chr9	136081795	136081795	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctcccggttggtatcagAattcctacctgcaggtgagg	13	11	1	2	rs1132279		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136081795	G	G	136081795	3	3	132	1	0	0	0	0	1	0	0	0	10906	246	9	5	123	5	OBP2B	9	136081795	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	4599988	136081795	5131636	331	118606											
NOTCH1	4851	broad.mit.edu	37	chr9	139400074	139400074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtagtccaggatgtggCacaagagcccgttgaatttg	13	8	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139400074	A	A	139400074	3	1	132	1	0	0	0	0	1	0	0	0	10642	710	25	3	3433	3	NOTCH1	9	139400074	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3318279	139400074	1813357	332	118607											
SLC34A3	142680	broad.mit.edu	37	chr9	140128234	140128234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacctgctgagtcatccCgccccacccaccctcacctc	4	24	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140128234	A	A	140128234	1	1	132	0	1	0	0	0	0	0	0	0	14683	667	23	1		1	SLC34A3	9	140128234	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	728160	140128234	1085197	333	118608											
FRMD4A	55691	broad.mit.edu	37	chr10	13782364	13782364	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtgtacgtgataaagttctCggagtgattatttacttgaa	10	4	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13782364	G	G	13782364	1	3	132	0	1	0	0	0	0	0	0	0	6111	899	31	4		4	FRMD4A	10	13782364	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08		13782364	121752383	334	118609											
SPAG6	9576	broad.mit.edu	37	chr10	22700124	22700124	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtggggaaaatggactttGaaacgttcaatattagaatg	12	3	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22700124	C	C	22700124	1	2	132	0	1	0	0	0	0	0	0	0	15098	1305	45	4		4	SPAG6	10	22700124	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	8917760	22700124	112834623	335	118610											
PARD3	56288	broad.mit.edu	37	chr10	34408534	34408534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctcggccaagcgtcCtcataccgaggcagagagct	14	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34408534	A	A	34408534	1	1	132	0	1	0	0	0	0	0	0	0	11537	696	24	2		2	PARD3	10	34408534	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	11708410	34408534	101126213	336	118611											
CREM	1390	broad.mit.edu	37	chr10	35500201	35500201	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaagctgcccgggagtgtCgcaggaagaagaaagaatat	16	6	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35500201	A	A	35500201	1	1	132	0	1	0	0	0	0	0	0	0	3900	884	31	3		3	CREM	10	35500201	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1091667	35500201	100034546	337	118612											
RET	5979	broad.mit.edu	37	chr10	43622099	43622099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcagaggaggagacacCgctggtggactgtaataatg	13	9	1	2	rs79853121		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43622099	A	A	43622099	3	1	132	1	0	0	0	0	1	0	0	0	13343	652	23	1	3190	1	RET	10	43622099	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	8121898	43622099	91912648	338	118613											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43678736	43678736	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaaggttggggtggagaaGatgttcatctttatcgaaaa	13	3	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43678736	C	C	43678736	3	2	132	1	0	0	0	0	1	0	0	0	3973	942	33	4	1401	4	CSGALNACT2	10	43678736	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	56637	43678736	91856011	339	118614											
CHAT	1103	broad.mit.edu	37	chr10	50824674	50824674	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacttttggagccctctctCaaccctgctttccccaccta	5	17	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50824674	G	G	50824674	1	3	132	0	1	0	0	0	0	0	0	0	3344	841	29	4		4	CHAT	10	50824674	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	7145938	50824674	84710073	340	118615											
PCDH15	65217	broad.mit.edu	37	chr10	55755364	55755364	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttatgagtgttaaggatTtttctcagtacagttcagaa	8	5	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55755364	C	C	55755364	1	2	132	0	1	0	0	0	0	0	0	0	11605	1856	64	5		5	PCDH15	10	55755364	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	4930690	55755364	79779383	341	118616											
JMJD1C	221037	broad.mit.edu	37	chr10	64944420	64944420	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacgtacaaaaaatcctggCaaatgagaggccaaattgaa	10	7	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64944420	G	G	64944420	3	3	132	1	0	0	0	0	1	0	0	0	8020	709	25	4	737	4	JMJD1C	10	64944420	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	9189056	64944420	70590327	342	118617											
CTNNA3	29119	broad.mit.edu	37	chr10	68535136	68535136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacaagaaacaaatatgCctgcaatgaataacagtttc	5	8	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68535136	A	A	68535136	1	1	132	0	1	0	0	0	0	0	0	0	4048	754	26	3		3	CTNNA3	10	68535136	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3590716	68535136	66999611	343	118618											
MRPS16	51021	broad.mit.edu	37	chr10	75010727	75010727	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgatcatcataggatgCagagggaaaaagccagcaag	12	6	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75010727	A	A	75010727	2	1	132	1	0	0	0	0	0	0	0	1	9920	697	25	3		3	MRPS16	10	75010727	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	6475591	75010727	60524020	344	118619											
MRPS16	51021	broad.mit.edu	37	chr10	75011685	75011685	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggacacttgttgtgaGcagccacaatgcggtagaac	12	11	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75011685	C	C	75011685	3	2	132	1	0	0	0	0	1	0	0	0	9920	971	34	4	311	4	MRPS16	10	75011685	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	958	75011685	60523062	345	118620											
CYP2C8	1558	broad.mit.edu	37	chr10	96818250	96818250	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggaaacaatcaatgagtaGagggaaattattgcagacct	11	5	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96818250	C	C	96818250	3	2	132	1	0	0	0	0	1	0	0	0	4200	933	33	4	831	4	CYP2C8	10	96818250	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	21806565	96818250	38716497	346	118621											
DNTT	1791	broad.mit.edu	37	chr10	98092434	98092434	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgggcccaggggagagaTgacggcaacaggggctgggt	19	9	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98092434	A	A	98092434	1	1	132	0	1	0	0	0	0	0	0	0	4720	1479	51	5		5	DNTT	10	98092434	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	1274184	98092434	37442313	347	118622											
SFXN3	81855	broad.mit.edu	37	chr10	102799248	102799248	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtgctgttctattgcagctCcatacacataagcaacctgg	8	11	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102799248	G	G	102799248	3	3	132	1	0	0	0	0	1	0	0	0	14309	855	30	4	926	4	SFXN3	10	102799248	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4706814	102799248	32735499	348	118623											
SUFU	51684	broad.mit.edu	37	chr10	104332783	104332783	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atagtggtcaagcttgttctCcggggttggtcttctgaggg	15	7	4	1	rs114750921	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104332783	T	T	104332783	1	4	132	0	1	0	0	0	0	0	0	0	15486	870	30	4		4	SUFU	10	104332783	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1533535	104332783	31201964	349	118624											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119798615	119798615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagggctatcagatcccCcattgttaagtttatcagat	7	10	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119798615	A	A	119798615	3	1	132	1	0	0	0	0	1	0	0	0	13002	623	22	2	417	2	RAB11FIP2	10	119798615	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	15465832	119798615	15736132	350	118625											
MKI67	4288	broad.mit.edu	37	chr10	129902254	129902254	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgtgagcctctcaactgctGagagctcctcttttacttct	8	13	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129902254	A	A	129902254	3	1	132	1	0	0	0	0	1	0	0	0	9691	1294	45	4	1932	4	MKI67	10	129902254	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	10103639	129902254	5632493	351	118626											
KNDC1	85442	broad.mit.edu	37	chr10	134999869	134999869	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcggaattattctctccGgaccccaggaaggcctttct	8	12	2	0	rs35998551	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134999869	T	T	134999869	2	4	132	1	0	0	0	0	0	0	0	1	8497	1103	39	1		1	KNDC1	10	134999869	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	5097615	134999869	534878	352	118627											
PHRF1	57661	broad.mit.edu	37	chr11	609537	609537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgaggcacccagttccCcggatgtggcgcctgcgggg	17	13	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	609537	A	A	609537	3	1	132	1	0	0	0	0	1	0	0	0	11956	623	22	2	4128	2	PHRF1	11	609537	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08		609537	134396979	353	118628											
MUC5B	727897	broad.mit.edu	37	chr11	1275485	1275485	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacggcctctgccactgcCgctgccgcccgctgcccccg	11	22	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1275485	A	A	1275485	2	1	132	1	0	0	0	0	0	0	0	1	10073	639	23	1		1	MUC5B	11	1275485	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	665948	1275485	133731031	354	118629											
ZNF195	7748	broad.mit.edu	37	chr11	3380816	3380816	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcttgagcaagttctgaaGaccttcccacattcttcaca	7	12	3	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3380816	A	A	3380816	2	1	132	1	0	0	0	0	0	0	0	1	17884	929	33	4		4	ZNF195	11	3380816	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2105331	3380816	131625700	355	118630											
STIM1	6786	broad.mit.edu	37	chr11	4112437	4112437	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcttctcgtgttgtccctCtctcctcttcgcctttcccc	5	18	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4112437	G	G	4112437	1	3	132	0	1	0	0	0	0	0	0	0	15401	928	32	4		4	STIM1	11	4112437	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	731621	4112437	130894079	356	118631											
OR52B2	255725	broad.mit.edu	37	chr11	6191554	6191554	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggtaacattggtgtgactCatgatgcactttatggtcct	10	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6191554	T	T	6191554	3	4	132	1	0	0	0	0	1	0	0	0	11205	826	29	4	971	4	OR52B2	11	6191554	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	2079117	6191554	128814962	357	118632											
OR10A2	341276	broad.mit.edu	37	chr11	6890841	6890841	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaggtgctgaccttgcctCtttccctgacagtaagaacg	10	12	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6890841	T	T	6890841	1	4	132	0	1	0	0	0	0	0	0	0	10984	928	32	4		4	OR10A2	11	6890841	5'Flank	SNP	C	TCGA-49-4486-01A-01D-1265-08	699287	6890841	128115675	358	118633											
ZNF215	7762	broad.mit.edu	37	chr11	6953446	6953446	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgcttagctcaagcctgaGaattactgcaatctagtaag	10	8	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6953446	C	C	6953446	1	2	132	0	1	0	0	0	0	0	0	0	17897	957	33	4		4	ZNF215	11	6953446	5'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	62605	6953446	128053070	359	118634											
PPFIBP2	8495	broad.mit.edu	37	chr11	7586647	7586647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtagctgagactacaggcGtgcaccgccatgcccagctc	11	14	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7586647	A	A	7586647	1	1	132	0	1	0	0	0	0	0	0	0	12410	1160	40	4		4	PPFIBP2	11	7586647	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	633201	7586647	127419869	360	118635											
SOX6	55553	broad.mit.edu	37	chr11	16208590	16208590	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaatttagaaagggactatCctaagacatttaaagatctg	8	5	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16208590	G	G	16208590	1	3	132	0	1	0	0	0	0	0	0	0	15069	870	30	4		4	SOX6	11	16208590	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	8621943	16208590	118797926	361	118636											
SLC6A5	9152	broad.mit.edu	37	chr11	20622793	20622793	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcccggagcaggagcttcCcgcggctgccgccccgccgc	15	19	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20622793	T	T	20622793	3	4	132	1	0	0	0	0	1	0	0	0	14801	623	22	4	128	4	SLC6A5	11	20622793	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4414203	20622793	114383723	362	118637											
C11orf94	143678	broad.mit.edu	37	chr11	45928090	45928090	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggaaagccaagcctttgtCacacatggtatctttatgag	9	9	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45928090	G	G	45928090	1	3	132	0	1	0	0	0	0	0	0	0	1686	841	29	4		4	C11orf94	11	45928090	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	25305297	45928090	89078426	363	118638											
OR5AS1	219447	broad.mit.edu	37	chr11	55798482	55798482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacactcagatcaaccaGcttctgctctttgctttgtg	7	12	4	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55798482	T	T	55798482	3	4	132	1	0	0	0	0	1	0	0	0	11240	962	34	3	590	3	OR5AS1	11	55798482	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	9870392	55798482	79208034	364	118639											
OR8H2	390151	broad.mit.edu	37	chr11	55873052	55873052	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacgtaattcatcactttttCtgtgacacttccccaatttt	3	11	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55873052	T	T	55873052	2	4	132	1	0	0	0	0	0	0	0	1	11332	912	32	4		4	OR8H2	11	55873052	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	74570	55873052	79133464	365	118640											
OR4D9	390199	broad.mit.edu	37	chr11	59282631	59282631	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcacagctcctaaggtcctGatagatcttctatcagagac	7	11	4	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59282631	A	A	59282631	2	1	132	1	0	0	0	0	0	0	0	1	11153	1277	45	4		4	OR4D9	11	59282631	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	3409579	59282631	75723885	366	118641											
AHNAK	79026	broad.mit.edu	37	chr11	62292702	62292702	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccttcgatattcacatctgGaacatcaatgtccaccttgg	7	12	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62292702	C	C	62292702	3	2	132	1	0	0	0	0	1	0	0	0	414	1174	41	4	8605	4	AHNAK	11	62292702	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	3010071	62292702	72713814	367	118642											
C11orf83	790955	broad.mit.edu	37	chr11	62439411	62439411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagctcctgcgaactcccCttcctgccctcaggagatgc	10	16	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62439411	A	A	62439411	1	1	132	0	1	0	0	0	0	0	0	0	1678	696	24	2		2	C11orf83	11	62439411	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	146709	62439411	72567105	368	118643											
SLC3A2	6520	broad.mit.edu	37	chr11	62656063	62656063	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccaaggctgacctcctgctCagcacccagccaggccgtga	11	17	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62656063	T	T	62656063	2	4	132	1	0	0	0	0	0	0	0	1	14741	813	29	4		4	SLC3A2	11	62656063	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	216652	62656063	72350453	369	118644											
STIP1	10963	broad.mit.edu	37	chr11	63971613	63971613	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgatgacttgttcatccCcccttcccttcgccctcatg	7	17	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63971613	A	A	63971613	1	1	132	0	1	0	0	0	0	0	0	0	15403	638	22	2		2	STIP1	11	63971613	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	1315550	63971613	71034903	370	118645											
RPS6KA4	8986	broad.mit.edu	37	chr11	64128005	64128005	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accagcgccagtacttcaagGaggctgaggtgcgcgtgtat	14	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64128005	A	A	64128005	3	1	132	1	0	0	0	0	1	0	0	0	13764	1175	41	4	417	4	RPS6KA4	11	64128005	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	156392	64128005	70878511	371	118646											
NAALADL1	10004	broad.mit.edu	37	chr11	64813372	64813372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactggtcattgagcatcCggacctgcagggggctggtg	15	10	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64813372	A	A	64813372	3	1	132	1	0	0	0	0	1	0	0	0	10223	652	23	1	272	1	NAALADL1	11	64813372	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	685367	64813372	70193144	372	118647											
POLA2	23649	broad.mit.edu	37	chr11	65063281	65063281	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacctagggggactctgtctGagaagggggccccccggtca	15	12	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65063281	C	C	65063281	1	2	132	0	1	0	0	0	0	0	0	0	12283	1305	45	4		4	POLA2	11	65063281	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	249909	65063281	69943235	373	118648											
FIBP	9158	broad.mit.edu	37	chr11	65652291	65652291	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccgtcagcggccaccagaGggagcagcagtgccacctgc	13	16	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65652291	C	C	65652291	1	2	132	0	1	0	0	0	0	0	0	0	5943	1015	35	4		4	FIBP	11	65652291	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	589010	65652291	69354225	374	118649											
SF3B2	10992	broad.mit.edu	37	chr11	65824204	65824204	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagcacccaagtggttcgtGattgttctccttgggcccat	10	12	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65824204	T	T	65824204	1	4	132	0	1	0	0	0	0	0	0	0	14264	1305	45	3		3	SF3B2	11	65824204	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	171913	65824204	69182312	375	118650											
SUV420H1	51111	broad.mit.edu	37	chr11	67925797	67925797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacaactgaacaaccgacGggtgaaggagcacagtctgt	12	10	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67925797	T	T	67925797	2	4	132	1	0	0	0	0	0	0	0	1	15532	1103	39	1		1	SUV420H1	11	67925797	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2101593	67925797	67080719	376	118651											
ORAOV1	220064	broad.mit.edu	37	chr11	69482633	69482633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcgcaatcaggtgctcCtagcaggaggaaacacacag	12	10	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69482633	A	A	69482633	1	1	132	0	1	0	0	0	0	0	0	0	11354	696	24	2		2	ORAOV1	11	69482633	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1556836	69482633	65523883	377	118652											
PPFIA1	8500	broad.mit.edu	37	chr11	70222740	70222740	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaatgttctttaaatgtctGaaatgtgtgtaaatgtttaa	7	3	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70222740	C	C	70222740	1	2	132	0	1	0	0	0	0	0	0	0	12405	1305	45	4		4	PPFIA1	11	70222740	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	740107	70222740	64783776	378	118653											
FOLR2	2350	broad.mit.edu	37	chr11	71927839	71927839	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttcactcagtgcttaccaGagcgcgttgtctaccctgta	8	12	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71927839	C	C	71927839	1	2	132	0	1	0	0	0	0	0	0	0	6040	957	33	4		4	FOLR2	11	71927839	5'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	1705099	71927839	63078677	379	118654											
FOLR2	2350	broad.mit.edu	37	chr11	71927869	71927869	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaccctgtaccgaagacaGaggctgtggggacagcctag	13	11	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71927869	C	C	71927869	1	2	132	0	1	0	0	0	0	0	0	0	6040	957	33	4		4	FOLR2	11	71927869	5'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	30	71927869	63078647	380	118655											
ACER3	55331	broad.mit.edu	37	chr11	76637694	76637694	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaaagcggtacattgcttCttatttagcactcacaggta	9	8	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76637694	T	T	76637694	3	4	132	1	0	0	0	0	1	0	0	0	140	913	32	4	203	4	ACER3	11	76637694	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4709825	76637694	58368822	381	118656											
MTMR2	8898	broad.mit.edu	37	chr11	95598701	95598701	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttattctctgtatgctgaGagtactgaacattctgcaca	8	8	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95598701	A	A	95598701	1	1	132	0	1	0	0	0	0	0	0	0	10038	957	33	4		4	MTMR2	11	95598701	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	18961007	95598701	39407815	382	118657											
TMEM123	114908	broad.mit.edu	37	chr11	102272716	102272716	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattgtggatgttgatatctGagatgtgttctgtgaaacac	11	5	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102272716	C	C	102272716	3	2	132	1	0	0	0	0	1	0	0	0	16159	1299	45	4	259	4	TMEM123	11	102272716	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	6674015	102272716	32733800	383	118658											
TMEM123	114908	broad.mit.edu	37	chr11	102272953	102272953	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtctctgcaataatatcaaGaaacattaaaaccagagcta	5	8	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102272953	C	C	102272953	1	2	132	0	1	0	0	0	0	0	0	0	16159	957	33	4		4	TMEM123	11	102272953	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	237	102272953	32733563	384	118659											
ELMOD1	55531	broad.mit.edu	37	chr11	107506565	107506565	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctgctatgtgctaggCgctgctctggacatcagggg	15	11	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107506565	G	G	107506565	1	3	132	0	1	0	0	0	0	0	0	0	5110	783	27	4		4	ELMOD1	11	107506565	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	5233612	107506565	27499951	385	118660											
ATM	472	broad.mit.edu	37	chr11	108159736	108159736	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcctaatccacctcattTtccatcgcatgtgattaaag	5	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108159736	G	G	108159736	3	3	132	1	0	0	0	0	1	0	0	0	1113	1841	64	5	4248	5	ATM	11	108159736	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	653171	108159736	26846780	386	118661											
EXPH5	23086	broad.mit.edu	37	chr11	108412521	108412521	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaagccatctgatatccctCtttgtcttctgaagtttgct	7	10	4	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108412521	G	G	108412521	3	3	132	1	0	0	0	0	1	0	0	0	5365	912	32	4	5851	4	EXPH5	11	108412521	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	252785	108412521	26593995	387	118662											
BTG4	54766	broad.mit.edu	37	chr11	111368194	111368194	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactttctacaagatctccaAtctttcctggagacaatatg	5	10	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111368194	G	G	111368194	1	3	132	0	1	0	0	0	0	0	0	0	1566	116	4	5		5	BTG4	11	111368194	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	2955673	111368194	23638322	388	118663											
CEP164	22897	broad.mit.edu	37	chr11	117280524	117280524	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcacccccacccccacCtactatggctccctggccag	7	20	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117280524	A	A	117280524	2	1	132	1	0	0	0	0	0	0	0	1	3279	668	24	2		2	CEP164	11	117280524	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	5912330	117280524	17725992	389	118664											
VPS11	55823	broad.mit.edu	37	chr11	118948942	118948942	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgcgagagctgaaagccttCctagagcacatgagtgaagt	12	10	0	5			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118948942	T	T	118948942	2	4	132	1	0	0	0	0	0	0	0	1	17315	854	30	4		4	VPS11	11	118948942	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	1668418	118948942	16057574	390	118665											
GRIK4	2900	broad.mit.edu	37	chr11	120852826	120852826	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcttacaggcctgggaatgGagaatattggtggaatcttt	12	5	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120852826	C	C	120852826	3	2	132	1	0	0	0	0	1	0	0	0	6842	1175	41	4	2477	4	GRIK4	11	120852826	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1903884	120852826	14153690	391	118666											
SORL1	6653	broad.mit.edu	37	chr11	121420743	121420743	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccggaattttctggaaagtCatactcccctcctgtgcctt	7	13	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121420743	T	T	121420743	3	4	132	1	0	0	0	0	1	0	0	0	15048	838	29	4	2184	4	SORL1	11	121420743	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	567917	121420743	13585773	392	118667											
STT3A	3703	broad.mit.edu	37	chr11	125475492	125475492	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgactatactagcctggcctCttgttgaatttttggtgtgt	10	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125475492	G	G	125475492	1	3	132	0	1	0	0	0	0	0	0	0	15451	928	32	4		4	STT3A	11	125475492	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	4054749	125475492	9531024	393	118668											
KCNJ5	3762	broad.mit.edu	37	chr11	128781480	128781480	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actgtcacctggctgttcttCggcttcatttggtggctcat	10	11	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128781480	T	T	128781480	2	4	132	1	0	0	0	0	0	0	0	1	8124	883	31	4		4	KCNJ5	11	128781480	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	3305988	128781480	6225036	394	118669											
TULP3	7289	broad.mit.edu	37	chr12	3048413	3048413	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaagaaaaggaagaaaaaGaaaaagatttccctgagtgc	9	5	1	5			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3048413	C	C	3048413	1	2	132	0	1	0	0	0	0	0	0	0	16901	957	33	4		4	TULP3	12	3048413	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08		3048413	130803482	395	118670											
GALNT8	26290	broad.mit.edu	37	chr12	4870202	4870202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagacaccacaagccctacGccttggatctcaccgctgcc	8	17	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4870202	T	T	4870202	3	4	132	1	0	0	0	0	1	0	0	0	6281	1087	38	3	1278	3	GALNT8	12	4870202	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1821789	4870202	128981693	396	118671											
GALNT8	26290	broad.mit.edu	37	chr12	4881569	4881569	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagagatgatgaattactGaggcatttcagcaccttggc	11	7	1	5			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4881569	A	A	4881569	1	1	132	0	1	0	0	0	0	0	0	0	6281	1305	45	4		4	GALNT8	12	4881569	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	11367	4881569	128970326	397	118672											
KCNA1	3736	broad.mit.edu	37	chr12	5020578	5020578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggagaacgtggacgagGcttcggccgccccgggccac	17	14	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5020578	A	A	5020578	3	1	132	1	0	0	0	0	1	0	0	0	8071	1203	42	4	36	4	KCNA1	12	5020578	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	139009	5020578	128831317	398	118673											
CD163	9332	broad.mit.edu	37	chr12	7635027	7635027	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctggtcttgaactccTggactcaagcaattctcctg	9	13	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7635027	A	A	7635027	1	1	132	0	1	0	0	0	0	0	0	0	2997	1595	55	5		5	CD163	12	7635027	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	2614449	7635027	126216868	399	118674											
TAS2R31	259290	broad.mit.edu	37	chr12	11183031	11183032	+	Missense_Mutation	DNP	TC	CA	CA													agatgaaggcttctctccttTcacccagtacctcacttgcc							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	11183032	CA	CA	11183031	3	2	132	1	0	0	0	0	1	0	0	0	15693	1792	62	5	29	5	TAS2R31	12	11183031	Missense_Mutation	DNP	TC	TCGA-49-4486-01A-01D-1265-08	3548004	11183031	122668864	400	118675											
GPRC5A	9052	broad.mit.edu	37	chr12	13065462	13065462	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagactatgaagtaaagaaaGagggcagctaactctgtcct	10	7	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13065462	C	C	13065462	3	2	132	1	0	0	0	0	1	0	0	0	6790	943	33	4	1073	4	GPRC5A	12	13065462	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1882431	13065462	120786433	401	118676											
ABCC9	10060	broad.mit.edu	37	chr12	22048279	22048279	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaataaaatgcattagtttCattgaactgtgaaaacattt	6	4	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22048279	G	G	22048279	1	3	132	0	1	0	0	0	0	0	0	0	59	841	29	4		4	ABCC9	12	22048279	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	8982817	22048279	111803616	402	118677											
OVCH1	341350	broad.mit.edu	37	chr12	29644224	29644224	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcatggcttctacactttCttcctaaatgtaatggtgac	6	9	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29644224	T	T	29644224	1	4	132	0	1	0	0	0	0	0	0	0	11417	928	32	4		4	OVCH1	12	29644224	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	7595945	29644224	104207671	403	118678											
ADAMTS20	80070	broad.mit.edu	37	chr12	43846309	43846309	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcaaagaaccagcataatTtacttactgccactgtatct	4	11	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43846309	A	A	43846309	1	1	132	0	1	0	0	0	0	0	0	0	266	1856	64	5		5	ADAMTS20	12	43846309	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	14202085	43846309	90005586	404	118679											
SENP1	29843	broad.mit.edu	37	chr12	48483038	48483038	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaccaaaagtcaacatttTaccccaactatatcttgcaa	2	13	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48483038	C	C	48483038	1	2	132	0	1	0	0	0	0	0	0	0	14159	1769	61	5		5	SENP1	12	48483038	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	4636729	48483038	85368857	405	118680											
KRT75	9119	broad.mit.edu	37	chr12	52826902	52826902	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcggtggtgatgctttcCagctgccgtcggagctcact	12	13	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52826902	T	T	52826902	2	4	132	1	0	0	0	0	0	0	0	1	8559	581	21	4		4	KRT75	12	52826902	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	4343864	52826902	81024993	406	118681											
SP1	6667	broad.mit.edu	37	chr12	53777321	53777321	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctccatgccaggcctccaGaccattaacctcagtgcatt	6	16	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53777321	A	A	53777321	2	1	132	1	0	0	0	0	0	0	0	1	15073	933	33	4		4	SP1	12	53777321	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	950419	53777321	80074574	407	118682											
PDE1B	5153	broad.mit.edu	37	chr12	54968907	54968907	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaagcccaaggccctgtctCtactgctccatgctgctgac	8	16	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54968907	G	G	54968907	3	3	132	1	0	0	0	0	1	0	0	0	11728	912	32	4	1185	4	PDE1B	12	54968907	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1191586	54968907	78882988	408	118683											
ESYT1	23344	broad.mit.edu	37	chr12	56525364	56525383	+	Intron	DEL	ATGAAGGGGTATGGGGAAGC	-	-													acgcccggtaagggaaaacaAtgaaggggtatggggaagca							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56525383	-	-	56525364	6	5	132	0	1	1	0	1	0	0	0	0	5306	116	4	0		0	ESYT1	12	56525364	Intron	DEL	ATGAAGGGGTATGGGGAAGC	TCGA-49-4486-01A-01D-1265-08	1556457	56525364	77326531	409	118684											
GLS2	27165	broad.mit.edu	37	chr12	56868559	56868559	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaacctgcacatgggaccctCgggtgtagggaaagggcaag	16	9	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56868559	T	T	56868559	1	4	132	0	1	0	0	0	0	0	0	0	6528	899	31	4		4	GLS2	12	56868559	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	343195	56868559	76983336	410	118685											
RBMS2	5939	broad.mit.edu	37	chr12	56915835	56915835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccgtgacttccaggcccGggatttcgacttttggctac	10	12	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56915835	T	T	56915835	3	4	132	1	0	0	0	0	1	0	0	0	13257	1116	39	1	30	1	RBMS2	12	56915835	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	47276	56915835	76936060	411	118686											
BAZ2A	11176	broad.mit.edu	37	chr12	57009066	57009066	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagttaagccccatgggActctgggtaccgttggccca	11	12	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57009066	T	T	57009066	3	4	132	1	0	0	0	0	1	0	0	0	1336	272	10	5	5357	5	BAZ2A	12	57009066	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	93231	57009066	76842829	412	118687											
INHBE	83729	broad.mit.edu	37	chr12	57850041	57850041	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaggcgccaagggtccCgcactctcctggctgagcac	15	14	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57850041	T	T	57850041	3	4	132	1	0	0	0	0	1	0	0	0	7814	652	23	4	469	4	INHBE	12	57850041	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	840975	57850041	76001854	413	118688											
DDIT3	1649	broad.mit.edu	37	chr12	57910715	57910715	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcagctagctgtgccactttCctttcattctcctgttcttt	5	13	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57910715	G	G	57910715	3	3	132	1	0	0	0	0	1	0	0	0	4363	854	30	4	126	4	DDIT3	12	57910715	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	60674	57910715	75941180	414	118689											
AVIL	10677	broad.mit.edu	37	chr12	58196975	58196975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggatactacacaaaaaCaacccttactgtgggagtct	10	9	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58196975	A	A	58196975	1	1	132	0	1	0	0	0	0	0	0	0	1232	493	17	3		3	AVIL	12	58196975	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	286260	58196975	75654920	415	118690											
SRGAP1	57522	broad.mit.edu	37	chr12	64437358	64437358	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttctgatttaattgatgtGagtacttgaagtttttgtct	8	4	2	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64437358	A	A	64437358	1	1	132	0	1	0	0	0	0	0	0	0	15263	1305	45	4		4	SRGAP1	12	64437358	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	6240383	64437358	69414537	416	118691											
CCT2	10576	broad.mit.edu	37	chr12	69993722	69993722	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgaagcgacaggttcttctGagtgcagctgaagcagcaga	14	8	2	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69993722	C	C	69993722	2	2	132	1	0	0	0	0	0	0	0	1	2983	1277	45	4		4	CCT2	12	69993722	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	5556364	69993722	63858173	417	118692											
APAF1	317	broad.mit.edu	37	chr12	99119407	99119407	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctttgttcacgggccaggGaagcatagtcctgaagttgt	12	9	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99119407	A	A	99119407	1	1	132	0	1	0	0	0	0	0	0	0	757	1189	41	4		4	APAF1	12	99119407	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	29125685	99119407	34732488	418	118693											
ACTR6	64431	broad.mit.edu	37	chr12	100606231	100606231	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaattttgttttccaggttGaaaggagaagaaaatacagt	9	4	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100606231	A	A	100606231	2	1	132	1	0	0	0	0	0	0	0	1	216	1281	45	4		4	ACTR6	12	100606231	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	1486824	100606231	33245664	419	118694											
DEPDC4	120863	broad.mit.edu	37	chr12	100649949	100649949	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctccaaaatattgtccaaGaatggaaggtgaatcaattg	10	6	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100649949	C	C	100649949	3	2	132	1	0	0	0	0	1	0	0	0	4481	933	33	4	136	4	DEPDC4	12	100649949	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	43718	100649949	33201946	420	118695											
STAB2	55576	broad.mit.edu	37	chr12	104157462	104157462	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttttaggaaatttcagtgGagatctttgtaccaaagaag	9	5	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104157462	A	A	104157462	1	1	132	0	1	0	0	0	0	0	0	0	15356	1189	41	4		4	STAB2	12	104157462	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	3507513	104157462	29694433	421	118696											
NUAK1	9891	broad.mit.edu	37	chr12	106460501	106460501	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgttgtcacagccagcaaaGaggtaaccagcctgtgagcc	11	12	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106460501	C	C	106460501	1	2	132	0	1	0	0	0	0	0	0	0	10807	957	33	4		4	NUAK1	12	106460501	3'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	2303039	106460501	27391394	422	118697											
TCP11L2	255394	broad.mit.edu	37	chr12	106729380	106729380	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaccagtgaagggatcaatCagctgtagaacaaatatgtg	10	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106729380	G	G	106729380	1	3	132	0	1	0	0	0	0	0	0	0	15837	841	29	4		4	TCP11L2	12	106729380	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	268879	106729380	27122515	423	118698											
ISCU	23479	broad.mit.edu	37	chr12	108957818	108957818	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactaagacatgatttcactGatttttttttcttctaggta	5	6	3	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108957818	A	A	108957818	1	1	132	0	1	0	0	0	0	0	0	0	7922	1305	45	4		4	ISCU	12	108957818	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	2228438	108957818	24894077	424	118699											
ARPC3	10094	broad.mit.edu	37	chr12	110874419	110874419	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttaagtggaaaaccaggctCtccaggaatgggaaaattag	12	6	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110874419	G	G	110874419	3	3	132	1	0	0	0	0	1	0	0	0	976	922	32	4	226	4	ARPC3	12	110874419	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1916601	110874419	22977476	425	118700											
ALDH2	217	broad.mit.edu	37	chr12	112220792	112220792	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttattcaaccccattgctGaagtctggtgctcatcaggg	10	10	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112220792	T	T	112220792	1	4	132	0	1	0	0	0	0	0	0	0	496	1305	45	3		3	ALDH2	12	112220792	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1346373	112220792	21631103	426	118701											
CCDC64	92558	broad.mit.edu	37	chr12	120510308	120510308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaatagtaattctctgtGgaacagctgagactgcagct	10	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120510308	T	T	120510308	1	4	132	0	1	0	0	0	0	0	0	0	2863	1363	47	2		2	CCDC64	12	120510308	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	8289516	120510308	13341587	427	118702											
DNAH10	196385	broad.mit.edu	37	chr12	124419898	124419898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaatactttccggacccCcgtctacaccacctccatga	6	17	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124419898	A	A	124419898	3	1	132	1	0	0	0	0	1	0	0	0	4638	623	22	2	13596	2	DNAH10	12	124419898	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3909590	124419898	9431997	428	118703											
DNAH10	196385	broad.mit.edu	37	chr12	124420114	124420114	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcatttcttggggcctctCaagaggcaggagggggactg	16	8	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124420114	G	G	124420114	1	3	132	0	1	0	0	0	0	0	0	0	4638	841	29	4		4	DNAH10	12	124420114	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	216	124420114	9431781	429	118704											
NCOR2	9612	broad.mit.edu	37	chr12	124907238	124907238	+	Intron	DEL	A	-	-													cacttggagcaattaagcccAggggggtgtgggaagggctg							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124907238	-	-	124907238	6	5	132	0	1	1	0	1	0	0	0	0	10331	203	7	0		0	NCOR2	12	124907238	Intron	DEL	A	TCGA-49-4486-01A-01D-1265-08	487124	124907238	8944657	430	118705											
RIMBP2	23504	broad.mit.edu	37	chr12	130929757	130929757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacgtagaggtattttccCgccgtgaggggcagctcagc	14	10	1	3	rs77391015	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130929757	A	A	130929757	2	1	132	1	0	0	0	0	0	0	0	1	13472	639	23	1		1	RIMBP2	12	130929757	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	6022519	130929757	2922138	431	118706											
SKA3	221150	broad.mit.edu	37	chr13	21742491	21742491	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcagtcttctgaaaattttCacaattagacaactctgggt	6	8	5	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21742491	G	G	21742491	3	3	132	1	0	0	0	0	1	0	0	0	14467	835	29	4	930	4	SKA3	13	21742491	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08		21742491	93427387	432	118707											
CENPJ	55835	broad.mit.edu	37	chr13	25480067	25480067	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgttcctcagagtcagtGctactgtcactatttggaac	9	10	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25480067	C	C	25480067	3	2	132	1	0	0	0	0	1	0	0	0	3264	1310	46	4	1951	4	CENPJ	13	25480067	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	3737576	25480067	89689811	433	118708											
PAN3	255967	broad.mit.edu	37	chr13	28841074	28841074	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggctaagattattcaaacCttcttgaatatattatttaa	5	5	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28841074	T	T	28841074	1	4	132	0	1	0	0	0	0	0	0	0	11509	696	24	4		4	PAN3	13	28841074	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3361007	28841074	86328804	434	118709											
BRCA2	675	broad.mit.edu	37	chr13	32913027	32913027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccagggacaacccgaacGtgatgaaaagatcaaagaac	9	10	1	4	rs80358685		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32913027	A	A	32913027	3	1	132	1	0	0	0	0	1	0	0	0	1508	1145	40	4	4573	4	BRCA2	13	32913027	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	4071953	32913027	82256851	435	118710											
RCBTB1	55213	broad.mit.edu	37	chr13	50123709	50123709	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgaccccggcactggccCcacatgtacacgtgcccacc	9	19	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50123709	G	G	50123709	3	3	132	1	0	0	0	0	1	0	0	0	13279	624	22	4	685	4	RCBTB1	13	50123709	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	17210682	50123709	65046169	436	118711											
KLF12	11278	broad.mit.edu	37	chr13	74387368	74387368	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtcacatttggcaggtcatCatcatcactgtcacttttac	7	11	6	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74387368	T	T	74387368	3	4	132	1	0	0	0	0	1	0	0	0	8411	826	29	4	497	4	KLF12	13	74387368	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	24263659	74387368	40782510	437	118712											
FBXL3	26224	broad.mit.edu	37	chr13	77589622	77589622	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttggccactagtactttgaGagatggatcatctactggag	12	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77589622	C	C	77589622	3	2	132	1	0	0	0	0	1	0	0	0	5777	942	33	4	729	4	FBXL3	13	77589622	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	3202254	77589622	37580256	438	118713											
ABCC4	10257	broad.mit.edu	37	chr13	95735399	95735399	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtttccatactcacttgtaGattccaggcgcttcacatct	6	12	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95735399	C	C	95735399	3	2	132	1	0	0	0	0	1	0	0	0	55	942	33	4	1340	4	ABCC4	13	95735399	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	18145777	95735399	19434479	439	118714											
DOCK9	23348	broad.mit.edu	37	chr13	99462607	99462607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaacgtgacatggcaccCgttgcagaatgctaagtgct	14	9	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99462607	A	A	99462607	1	1	132	0	1	0	0	0	0	0	0	0	4734	667	23	1		1	DOCK9	13	99462607	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3727208	99462607	15707271	440	118715											
ATP11A	23250	broad.mit.edu	37	chr13	113514624	113514624	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtacgacaccgcgtatctGaccctctacaacatcagctt	6	14	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113514624	A	A	113514624	2	1	132	1	0	0	0	0	0	0	0	1	1123	1277	45	4		4	ATP11A	13	113514624	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	14052017	113514624	1655254	441	118716											
TEP1	7011	broad.mit.edu	37	chr14	20850612	20850612	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcaggaggacagtgtggagGaatgaaaaagtaaagaacaa	14	3	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20850612	C	C	20850612	1	2	132	0	1	0	0	0	0	0	0	0	15881	1189	41	4		4	TEP1	14	20850612	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08		20850612	86498928	442	118717											
G2E3	55632	broad.mit.edu	37	chr14	31058696	31058696	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcttctaaactggtaagTaaattattttactattaagt	6	4	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31058696	G	G	31058696	1	3	132	0	1	0	0	0	0	0	0	0	6200	1653	57	5		5	G2E3	14	31058696	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	10208084	31058696	76290844	443	118718											
COCH	1690	broad.mit.edu	37	chr14	31349863	31349863	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcgccgatttaatttacaGaagaattttgttggaaaagt	9	5	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31349863	A	A	31349863	2	1	132	1	0	0	0	0	0	0	0	1	3688	933	33	4		4	COCH	14	31349863	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	291167	31349863	75999677	444	118719											
SDCCAG1	9147	broad.mit.edu	37	chr14	50267175	50267175	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agacaagtcaatggtagtatCaggataatttaatgtctctt	8	5	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50267175	G	G	50267175	3	3	132	1	0	0	0	0	1	0	0	0	14070	826	29	4	939	4	SDCCAG1	14	50267175	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	18917312	50267175	57082365	445	118720											
PYGL	5836	broad.mit.edu	37	chr14	51401740	51401740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttctaggaagcctgcCtggttcttgcaagcatggtc	11	11	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51401740	A	A	51401740	1	1	132	0	1	0	0	0	0	0	0	0	12969	696	24	2		2	PYGL	14	51401740	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1134565	51401740	55947800	446	118721											
C14orf135	64430	broad.mit.edu	37	chr14	60574884	60574884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggaggcactgctctactAttcttctttggatggatgac	10	9	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60574884	G	G	60574884	1	3	132	0	1	0	0	0	0	0	0	0	1758	464	16	5		5	C14orf135	14	60574884	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	9173144	60574884	46774656	447	118722											
KCNH5	27133	broad.mit.edu	37	chr14	63246421	63246421	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatactctggacactaataaGaaaaagcagacccagagaac	7	9	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63246421	C	C	63246421	1	2	132	0	1	0	0	0	0	0	0	0	8105	957	33	4		4	KCNH5	14	63246421	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	2671537	63246421	44103119	448	118723											
SIPA1L1	26037	broad.mit.edu	37	chr14	72116924	72116924	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatcaaagacggaaaatacaGaaggatttcaagagaagaaa	10	4	2	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72116924	C	C	72116924	1	2	132	0	1	0	0	0	0	0	0	0	14442	957	33	4		4	SIPA1L1	14	72116924	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	8870503	72116924	35232616	449	118724											
SIPA1L1	26037	broad.mit.edu	37	chr14	72152196	72152196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagaggaacgccagcaaGgggcctcattcacctcaagt	12	12	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72152196	T	T	72152196	3	4	132	1	0	0	0	0	1	0	0	0	14442	991	35	2	3256	2	SIPA1L1	14	72152196	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	35272	72152196	35197344	450	118725											
ZFYVE1	53349	broad.mit.edu	37	chr14	73437567	73437567	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaacctaaggaattgtgaAggactcggagagggggctgg	18	5	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73437567	C	C	73437567	1	2	132	0	1	0	0	0	0	0	0	0	17789	87	3	5		5	ZFYVE1	14	73437567	3'UTR	SNP	A	TCGA-49-4486-01A-01D-1265-08	1285371	73437567	33911973	451	118726											
SNW1	22938	broad.mit.edu	37	chr14	78197250	78197250	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatatgtacctactttataTgcagtaggaaaaagattttc	6	5	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78197250	A	A	78197250	1	1	132	0	1	0	0	0	0	0	0	0	14993	1479	51	5		5	SNW1	14	78197250	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	4759683	78197250	29152290	452	118727											
TSHR	7253	broad.mit.edu	37	chr14	81448669	81448669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgatgcctgggtctgggCtgaggaagaggccactatca	14	8	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81448669	A	A	81448669	1	1	132	0	1	0	0	0	0	0	0	0	16747	812	28	3		3	TSHR	14	81448669	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3251419	81448669	25900871	453	118728											
FBLN5	10516	broad.mit.edu	37	chr14	92343918	92343918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgggtcgtggcttgcatttgGaagatgtcagcgggaacgga	17	7	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92343918	T	T	92343918	3	4	132	1	0	0	0	0	1	0	0	0	5757	1165	41	3	256	3	FBLN5	14	92343918	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	10895249	92343918	15005622	454	118729											
SLC24A4	123041	broad.mit.edu	37	chr14	92911586	92911586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaattggctctgggtgccTgggtgtccgtgcttgttctt	13	8	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92911586	C	C	92911586	1	2	132	0	1	0	0	0	0	0	0	0	14582	1595	55	5		5	SLC24A4	14	92911586	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	567668	92911586	14437954	455	118730											
UBR7	55148	broad.mit.edu	37	chr14	93685017	93685017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagggaaaggatgatgtccGggaggttaaagtagagcaga	16	4	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93685017	T	T	93685017	3	4	132	1	0	0	0	0	1	0	0	0	17032	1116	39	1	772	1	UBR7	14	93685017	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	773431	93685017	13664523	456	118731											
KIAA1409	57578	broad.mit.edu	37	chr14	94110088	94110088	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtaggaaggtcctttattCagtctctatcttgaactaaa	8	7	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94110088	T	T	94110088	1	4	132	0	1	0	0	0	0	0	0	0	8300	841	29	4		4	KIAA1409	14	94110088	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	425071	94110088	13239452	457	118732											
SERPINA4	5267	broad.mit.edu	37	chr14	95033575	95033575	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtggaacaacttgttgcgGaagaggtaatcagtgtgcta	14	5	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95033575	A	A	95033575	2	1	132	1	0	0	0	0	0	0	0	1	14204	1161	41	4		4	SERPINA4	14	95033575	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	923487	95033575	12315965	458	118733											
AHNAK2	113146	broad.mit.edu	37	chr14	105413013	105413013	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctccgccttggggcctttCaggtccagcttggggccctt	12	15	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105413013	T	T	105413013	2	4	132	1	0	0	0	0	0	0	0	1	415	813	29	4		4	AHNAK2	14	105413013	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	10379438	105413013	1936527	459	118734											
AHNAK2	113146	broad.mit.edu	37	chr14	105413043	105413043	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggggcccttgacgtctatCtgggggcccttgagatccac	13	12	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105413043	G	G	105413043	3	3	132	1	0	0	0	0	1	0	0	0	415	912	32	4	8646	4	AHNAK2	14	105413043	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	30	105413043	1936497	460	118735											
TUBGCP5	114791	broad.mit.edu	37	chr15	22862931	22862931	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagactcacatttttatcttGaaggatgtatttggagcaga	9	5	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22862931	C	C	22862931	1	2	132	0	1	0	0	0	0	0	0	0	16895	1305	45	4		4	TUBGCP5	15	22862931	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08		22862931	79668461	461	118736											
NIPA2	81614	broad.mit.edu	37	chr15	23012194	23012194	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaggtggaacaatttctttCcttatgtgctcatcaaattt	6	9	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23012194	T	T	23012194	1	4	132	0	1	0	0	0	0	0	0	0	10518	870	30	4		4	NIPA2	15	23012194	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	149263	23012194	79519198	462	118737											
GABRB3	2562	broad.mit.edu	37	chr15	26793029	26793029	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatctgtctatggcattcaCatcggttagatcaggtattt	8	9	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26793029	T	T	26793029	3	4	132	1	0	0	0	0	1	0	0	0	6228	478	17	4	92	4	GABRB3	15	26793029	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3780835	26793029	75738363	463	118738											
OCA2	4948	broad.mit.edu	37	chr15	28197034	28197034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaatcccgtcagatatcCtatgctgtaagagagaaacc	9	10	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28197034	A	A	28197034	3	1	132	1	0	0	0	0	1	0	0	0	10910	681	24	2	697	2	OCA2	15	28197034	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1404005	28197034	74334358	464	118739											
FMN1	342184	broad.mit.edu	37	chr15	33180500	33180500	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgttccagcttcctaagaGatatggtaaacaaaagtaca	7	8	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33180500	T	T	33180500	1	4	132	0	1	0	0	0	0	0	0	0	6007	957	33	3		3	FMN1	15	33180500	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	4983466	33180500	69350892	465	118740											
BUB1B	701	broad.mit.edu	37	chr15	40505533	40505533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgtccttcaatttccagGatcttctccaacacagtgaa	5	12	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40505533	A	A	40505533	3	1	132	1	0	0	0	0	1	0	0	0	1581	1188	41	4	2614	4	BUB1B	15	40505533	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	7325033	40505533	62025859	466	118741											
FAM82A2	55177	broad.mit.edu	37	chr15	41043610	41043610	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagccataactgcctccaaGagagacaactcacccccctt	6	16	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41043610	C	C	41043610	1	2	132	0	1	0	0	0	0	0	0	0	5684	957	33	4		4	FAM82A2	15	41043610	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	538077	41043610	61487782	467	118742											
INO80	54617	broad.mit.edu	37	chr15	41350980	41350980	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctgagtgtagagggtcttCtgtaaatataaaaggggaag	13	4	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41350980	A	A	41350980	5	1	132	1	0	0	0	0	0	0	1	0	7816	927	32	3	2912	3	INO80	15	41350980	Splice_Site	SNP	C	TCGA-49-4486-01A-01D-1265-08	307370	41350980	61180412	468	118743											
OIP5	11339	broad.mit.edu	37	chr15	41624440	41624440	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgcttcactgcactcactgGagaagaccacggccccgagg	11	15	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41624440	A	A	41624440	3	1	132	1	0	0	0	0	1	0	0	0	10943	1174	41	4	389	4	OIP5	15	41624440	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	273460	41624440	60906952	469	118744											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42139578	42139578	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaggagcaggggatccCgttcccacccatctcgccca	10	18	1	0	rs145043086		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42139578	T	T	42139578	3	4	132	1	0	0	0	0	1	0	0	0	8025	652	23	4	2778	4	JMJD7-PLA2G4B	15	42139578	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	515138	42139578	60391814	470	118745											
LCMT2	9836	broad.mit.edu	37	chr15	43620678	43620678	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgtgactgtatgggggttGaagtaggtaccaaaggaaaa	14	3	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43620678	C	C	43620678	3	2	132	1	0	0	0	0	1	0	0	0	8751	1281	45	4	54	4	LCMT2	15	43620678	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1481100	43620678	58910714	471	118746											
LCMT2	9836	broad.mit.edu	37	chr15	43622436	43622436	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagcgccgagagacaagatCtgcgcgcgaagcgcggcctg	15	14	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43622436	G	G	43622436	3	3	132	1	0	0	0	0	1	0	0	0	8751	912	32	4	1812	4	LCMT2	15	43622436	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1758	43622436	58908956	472	118747											
TP53BP1	7158	broad.mit.edu	37	chr15	43771445	43771445	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgagacttcataaataatCaacgtttccaatggaccaca	5	10	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43771445	T	T	43771445	1	4	132	0	1	0	0	0	0	0	0	0	16507	841	29	4		4	TP53BP1	15	43771445	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	149009	43771445	58759947	473	118748											
PDIA3	2923	broad.mit.edu	37	chr15	44037280	44037280	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagccttgcaaatgctcgatGagagagaaagtatcgatgag	12	6	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44037280	C	C	44037280	1	2	132	0	1	0	0	0	0	0	0	0	11763	1305	45	4		4	PDIA3	15	44037280	5'Flank	SNP	G	TCGA-49-4486-01A-01D-1265-08	265835	44037280	58494112	474	118749											
DUOX2	50506	broad.mit.edu	37	chr15	45403019	45403019	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagaccaggaagggtcaatCatgggagaagcaactcagac	13	8	3	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45403019	T	T	45403019	1	4	132	0	1	0	0	0	0	0	0	0	4841	841	29	4		4	DUOX2	15	45403019	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1365739	45403019	57128373	475	118750											
SLC28A2	9153	broad.mit.edu	37	chr15	45560623	45560623	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctctgggatgtggttaggTagcccttcaaacatgcatgt	11	10	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45560623	A	A	45560623	1	1	132	0	1	0	0	0	0	0	0	0	14646	1653	57	5		5	SLC28A2	15	45560623	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	157604	45560623	56970769	476	118751											
GCNT3	9245	broad.mit.edu	37	chr15	59910672	59910672	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtcacccgaggggaccaaGaggcagtgcttcaggctatt	15	10	2	1	rs143474619		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59910672	C	C	59910672	3	2	132	1	0	0	0	0	1	0	0	0	6364	943	33	4	237	4	GCNT3	15	59910672	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	14350049	59910672	42620720	477	118752											
TLN2	83660	broad.mit.edu	37	chr15	63045834	63045834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacacccttattggtgagcGggatgagatgaccttgacca	11	9	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63045834	T	T	63045834	1	4	132	0	1	0	0	0	0	0	0	0	16071	1131	39	1		1	TLN2	15	63045834	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	3135162	63045834	39485558	478	118753											
HERC1	8925	broad.mit.edu	37	chr15	63953892	63953892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgaaaaatctacagttccCaagacttaaggtatgaggta	9	7	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63953892	A	A	63953892	1	1	132	0	1	0	0	0	0	0	0	0	7124	609	21	2		2	HERC1	15	63953892	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	908058	63953892	38577500	479	118754											
RBPMS2	348093	broad.mit.edu	37	chr15	65043729	65043729	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttctccagggtcccaggctCtacccagggggcggctgggt	15	14	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65043729	G	G	65043729	1	3	132	0	1	0	0	0	0	0	0	0	13272	928	32	4		4	RBPMS2	15	65043729	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1089837	65043729	37487663	480	118755											
IGDCC4	57722	broad.mit.edu	37	chr15	65676690	65676690	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgttagatgcactaaagtcaGagtggacaatgacttcagcc	10	9	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65676690	C	C	65676690	3	2	132	1	0	0	0	0	1	0	0	0	7639	942	33	4	346	4	IGDCC4	15	65676690	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	632961	65676690	36854702	481	118756											
THSD4	79875	broad.mit.edu	37	chr15	72020963	72020963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accaggaaaatacgagggcgGagggaccatgttcacctaca	12	10	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72020963	T	T	72020963	3	4	132	1	0	0	0	0	1	0	0	0	16001	1174	41	3	1463	3	THSD4	15	72020963	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	6344273	72020963	30510429	482	118757											
HEXA	3073	broad.mit.edu	37	chr15	72649045	72649045	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctagctctagtccctcagctCacacgcctgtggtaaaggaa	9	13	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72649045	T	T	72649045	1	4	132	0	1	0	0	0	0	0	0	0	7140	841	29	4		4	HEXA	15	72649045	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	628082	72649045	29882347	483	118758											
MAN2C1	4123	broad.mit.edu	37	chr15	75654689	75654689	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccagtgcacttaccatctCcacccaggtgccccccacag	7	20	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75654689	G	G	75654689	3	3	132	1	0	0	0	0	1	0	0	0	9310	864	30	4	2195	4	MAN2C1	15	75654689	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3005644	75654689	26876703	484	118759											
IL16	3603	broad.mit.edu	37	chr15	81592196	81592196	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctccatcaggcagagaatCagctcctttgaaacctttgg	8	12	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81592196	T	T	81592196	2	4	132	1	0	0	0	0	0	0	0	1	7703	816	29	4		4	IL16	15	81592196	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	5937507	81592196	20939196	485	118760											
EFTUD1	79631	broad.mit.edu	37	chr15	82431296	82431296	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaatgattaaatttgttctCaataatgttgatttacaaaa	4	3	1	2	rs113459195		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82431296	G	G	82431296	1	3	132	0	1	0	0	0	0	0	0	0	5000	841	29	4		4	EFTUD1	15	82431296	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	839100	82431296	20100096	486	118761											
EFTUD1	79631	broad.mit.edu	37	chr15	82523149	82523149	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tataggttttcatagggcaaGaatatgaccaacaaccaaaa	7	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82523149	C	C	82523149	1	2	132	0	1	0	0	0	0	0	0	0	5000	957	33	4		4	EFTUD1	15	82523149	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	91853	82523149	20008243	487	118762											
CLCN7	1186	broad.mit.edu	37	chr16	1507247	1507247	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcccacccacacaagatttCaactcaccttgaaatctcgt	4	15	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1507247	G	G	1507247	1	3	132	0	1	0	0	0	0	0	0	0	3499	841	29	4		4	CLCN7	16	1507247	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08		1507247	88847506	488	118763											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1816175	1816175	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgagtttcccccatcccctCattcccacgtttctgcccag	6	19	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1816175	T	T	1816175	1	4	132	0	1	0	0	0	0	0	0	0	9378	841	29	4		4	MAPK8IP3	16	1816175	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	308928	1816175	88538578	489	118764											
TBL3	10607	broad.mit.edu	37	chr16	2024478	2024478	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcgcctccctcccagactGagtccaggaagatgtgagca	11	14	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2024478	C	C	2024478	1	2	132	0	1	0	0	0	0	0	0	0	15765	1305	45	4		4	TBL3	16	2024478	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	208303	2024478	88330275	490	118765											
ZNF597	146434	broad.mit.edu	37	chr16	3486852	3486852	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttcctcaggcaaagcaaGatttggtttctcattaaaat	7	7	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3486852	C	C	3486852	3	2	132	1	0	0	0	0	1	0	0	0	18154	942	33	4	431	4	ZNF597	16	3486852	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1462374	3486852	86867901	491	118766											
NAGPA	51172	broad.mit.edu	37	chr16	5075345	5075345	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctgaggcacaagtgctatCaggaacttggctgccccaca	12	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5075345	T	T	5075345	1	4	132	0	1	0	0	0	0	0	0	0	10238	841	29	4		4	NAGPA	16	5075345	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	1588493	5075345	85279408	492	118767											
ACSM2A	123876	broad.mit.edu	37	chr16	20494714	20494714	+	Intron	DEL	A	-	-													tcagcctggccaacatggtgAaaccccatctctacccaaaa					rs71377660		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20494714	-	-	20494714	6	5	132	0	1	1	0	1	0	0	0	0	183	261	9	0		0	ACSM2A	16	20494714	Intron	DEL	A	TCGA-49-4486-01A-01D-1265-08	15419369	20494714	69860039	493	118768											
ACSM1	116285	broad.mit.edu	37	chr16	20638525	20638525	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctacccagaggcattaatGatgtcatcactcctccccag	6	15	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20638525	A	A	20638525	2	1	132	1	0	0	0	0	0	0	0	1	182	1280	45	4		4	ACSM1	16	20638525	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	143811	20638525	69716228	494	118769											
RBBP6	5930	broad.mit.edu	37	chr16	24581790	24581790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaagtgactggaactgaagGatccagctcaactctggtgg	12	8	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24581790	T	T	24581790	3	4	132	1	0	0	0	0	1	0	0	0	13211	1174	41	3	3899	3	RBBP6	16	24581790	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	3943265	24581790	65772963	495	118770											
POLR2C	5432	broad.mit.edu	37	chr16	57503120	57503121	+	Frame_Shift_Ins	INS	-	A	A													cccgagtgctcggtggagttINScaccctcgatgtgcggtgca							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57503121	A	A	57503120	7	5	132	1	0	1	1	0	0	0	0	0	12311	1783	62	0	320	0	POLR2C	16	57503120	Frame_Shift_Ins	INS	-	TCGA-49-4486-01A-01D-1265-08	32921330	57503120	32851633	496	118771											
CNOT1	23019	broad.mit.edu	37	chr16	58619324	58619324	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttagctacccctccggaatCaggcaggatcctgtccatta	8	13	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58619324	G	G	58619324	3	3	132	1	0	0	0	0	1	0	0	0	3649	826	29	4	6796	4	CNOT1	16	58619324	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1116204	58619324	31735429	497	118772											
CDH11	1009	broad.mit.edu	37	chr16	65038648	65038649	+	Missense_Mutation	DNP	CC	AA	AA													gtagcacctgcccctccttgCccttctcatggtgcccatgg							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	65038649	AA	AA	65038648	3	1	132	1	0	0	0	0	1	0	0	0	3127	739	26	3	2309	3	CDH11	16	65038648	Missense_Mutation	DNP	CC	TCGA-49-4486-01A-01D-1265-08	6419324	65038648	25316105	498	118773											
NAE1	8883	broad.mit.edu	37	chr16	66844582	66844582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggcctgtatgggcacaGtgtgcccagtagcttacctg	13	11	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66844582	A	A	66844582	1	1	132	0	1	0	0	0	0	0	0	0	10233	1044	36	4		4	NAE1	16	66844582	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1805934	66844582	23510171	499	118774											
FAM65A	79567	broad.mit.edu	37	chr16	67578375	67578375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccttcctttgtaacccCtaaccccagggagtcctgcc	6	19	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67578375	A	A	67578375	1	1	132	0	1	0	0	0	0	0	0	0	5650	696	24	2		2	FAM65A	16	67578375	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	733793	67578375	22776378	500	118775											
HPR	3250	broad.mit.edu	37	chr16	72107647	72107647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatattgattttcttttctGgctgcttagtgggaggagtg	12	4	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72107647	T	T	72107647	1	4	132	0	1	0	0	0	0	0	0	0	7404	1363	47	2		2	HPR	16	72107647	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	4529272	72107647	18247106	501	118776											
IRF8	3394	broad.mit.edu	37	chr16	85942710	85942710	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagattttgaggaagtgacgGaccggtcccaactggacatt	12	9	0	3	rs34712374		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85942710	A	A	85942710	3	1	132	1	0	0	0	0	1	0	0	0	7906	1174	41	4	295	4	IRF8	16	85942710	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	13835063	85942710	4412043	502	118777											
FANCA	2175	broad.mit.edu	37	chr16	89862360	89862360	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctgagtcagggtatgactGaagaacctcttcagaggatc	11	8	4	5			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89862360	C	C	89862360	3	2	132	1	0	0	0	0	1	0	0	0	5719	1281	45	4	3539	4	FANCA	16	89862360	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	3919650	89862360	492393	503	118778											
CENPBD1	92806	broad.mit.edu	37	chr16	90038109	90038109	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgagtcaaccgagaggctctCagaggagtagctatttgtga	13	8	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90038109	G	G	90038109	2	3	132	1	0	0	0	0	0	0	0	1	3258	813	29	4		4	CENPBD1	16	90038109	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	175749	90038109	316644	504	118779											
CAMTA2	23125	broad.mit.edu	37	chr17	4883116	4883116	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaatgatgaaagactgaAgggctccagttcactggccc	13	9	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4883116	G	G	4883116	3	3	132	1	0	0	0	0	1	0	0	0	2640	72	3	5	2217	5	CAMTA2	17	4883116	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08		4883116	76312094	505	118780											
PITPNM3	83394	broad.mit.edu	37	chr17	6441254	6441254	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaatgggatcttcttcttGaggcttctaggaaggtcacc	10	10	5	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6441254	T	T	6441254	1	4	132	0	1	0	0	0	0	0	0	0	12047	1305	45	3		3	PITPNM3	17	6441254	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1558138	6441254	74753956	506	118781											
KIAA0753	9851	broad.mit.edu	37	chr17	6493842	6493842	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacttacttgccattacagGgcctttctaacatgatgttc	6	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6493842	A	A	6493842	3	1	132	1	0	0	0	0	1	0	0	0	8261	1232	43	4	366	4	KIAA0753	17	6493842	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	52588	6493842	74701368	507	118782											
ACADVL	37	broad.mit.edu	37	chr17	7125019	7125019	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtgaggcaaccctaggaGagccagggattggggggcac	18	9	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7125019	A	A	7125019	1	1	132	0	1	0	0	0	0	0	0	0	116	957	33	4		4	ACADVL	17	7125019	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	631177	7125019	74070191	508	118783											
MYH1	4619	broad.mit.edu	37	chr17	10399410	10399410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgcgctccaccatagCcagctgttccttcaggtcct	9	16	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10399410	A	A	10399410	3	1	132	1	0	0	0	0	1	0	0	0	10123	739	26	3	817	3	MYH1	17	10399410	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3274391	10399410	70795800	509	118784											
MYOCD	93649	broad.mit.edu	37	chr17	12655756	12655756	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaattaagacaacagcttcGaattcggggcttgcctgtgt	11	8	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12655756	A	A	12655756	3	1	132	1	0	0	0	0	1	0	0	0	10181	1058	37	4	1189	4	MYOCD	17	12655756	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2256346	12655756	68539454	510	118785											
PIGL	9487	broad.mit.edu	37	chr17	16220083	16220083	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtccctctgagaaacttaTgagggggaaatttgcaaatc	10	8	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16220083	C	C	16220083	1	2	132	0	1	0	0	0	0	0	0	0	11986	1479	51	5		5	PIGL	17	16220083	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	3564327	16220083	64975127	511	118786											
VTN	7448	broad.mit.edu	37	chr17	26696372	26696372	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcggcatcgatggggccctCgatgccccagacatctcgga	14	14	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26696372	T	T	26696372	3	4	132	1	0	0	0	0	1	0	0	0	17364	893	31	4	849	4	VTN	17	26696372	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	10476289	26696372	54498838	512	118787											
FOXN1	8456	broad.mit.edu	37	chr17	26851622	26851622	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcattgcgtcaccagggccCgagcaagtccagggccactg	13	15	1	0	rs138510671		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26851622	G	G	26851622	2	3	132	1	0	0	0	0	0	0	0	1	6079	639	23	4		4	FOXN1	17	26851622	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	155250	26851622	54343588	513	118788											
FLOT2	2319	broad.mit.edu	37	chr17	27210261	27210261	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatcttcacctgtcagtgacGacaaaggcgcttcagctagg	11	11	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27210261	A	A	27210261	1	1	132	0	1	0	0	0	0	0	0	0	5995	1073	37	4		4	FLOT2	17	27210261	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	358639	27210261	53984949	514	118789											
RAB11FIP4	84440	broad.mit.edu	37	chr17	29758831	29758831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgcttcattcccacagGtggaaaaacttgtgaaatat	7	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29758831	T	T	29758831	3	4	132	1	0	0	0	0	1	0	0	0	13004	1275	44	3	166	3	RAB11FIP4	17	29758831	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2548570	29758831	51436379	515	118790											
KRT27	342574	broad.mit.edu	37	chr17	38935927	38935927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggggctgagtccgcgccCgggcgcacccaagcgtggtt	17	14	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38935927	A	A	38935927	1	1	132	0	1	0	0	0	0	0	0	0	8535	667	23	1		1	KRT27	17	38935927	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	9177096	38935927	42259283	516	118791											
ACLY	47	broad.mit.edu	37	chr17	40062974	40062974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcctaggacccctcccCgctttccctggaagcacatg	8	17	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40062974	A	A	40062974	1	1	132	0	1	0	0	0	0	0	0	0	143	667	23	1		1	ACLY	17	40062974	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1127047	40062974	41132236	517	118792											
C17orf53	78995	broad.mit.edu	37	chr17	42225308	42225308	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggcgcctgagacctgtctCttctaggccacaggagactg	13	12	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42225308	G	G	42225308	3	3	132	1	0	0	0	0	1	0	0	0	1878	913	32	4	147	4	C17orf53	17	42225308	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	2162334	42225308	38969902	518	118793											
HOXB1	3211	broad.mit.edu	37	chr17	46607302	46607302	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttctccttccgcttccctCctcccggggctggctctgga	9	18	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46607302	T	T	46607302	1	4	132	0	1	0	0	0	0	0	0	0	7366	870	30	4		4	HOXB1	17	46607302	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	4381994	46607302	34587908	519	118794											
ANKFN1	162282	broad.mit.edu	37	chr17	54450167	54450167	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggagtggaggtatcggctCtacagacgcatgaaaacagg	15	7	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54450167	T	T	54450167	2	4	132	1	0	0	0	0	0	0	0	1	625	900	32	4		4	ANKFN1	17	54450167	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	7842865	54450167	26745043	520	118795											
C17orf67	339210	broad.mit.edu	37	chr17	54892156	54892156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagcagcccatgctgggacCaacacctagtttcatagtga	9	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54892156	T	T	54892156	1	4	132	0	1	0	0	0	0	0	0	0	1891	609	21	4		4	C17orf67	17	54892156	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	441989	54892156	26303054	521	118796											
TRIM37	4591	broad.mit.edu	37	chr17	57134138	57134138	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttatagttagtatgaatttCaatattcatctttgttaacc	5	5	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57134138	T	T	57134138	1	4	132	0	1	0	0	0	0	0	0	0	16635	841	29	4		4	TRIM37	17	57134138	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2241982	57134138	24061072	522	118797											
APPBP2	10513	broad.mit.edu	37	chr17	58571968	58571968	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagcctgaaaacaatgatGaagcaaatgtctgtaagaaa	8	6	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58571968	A	A	58571968	3	1	132	1	0	0	0	0	1	0	0	0	818	1290	45	4	1563	4	APPBP2	17	58571968	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1437830	58571968	22623242	523	118798											
ACE	1636	broad.mit.edu	37	chr17	61574336	61574336	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgcagtacaactggacGccgaactccggtaccgccac	11	16	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61574336	T	T	61574336	2	4	132	1	0	0	0	0	0	0	0	1	136	1074	38	3		3	ACE	17	61574336	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	3002368	61574336	19620874	524	118799											
CCDC45	90799	broad.mit.edu	37	chr17	62533820	62533820	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgatgatgttttcttcCgggaactggaagctgagcgc	13	7	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62533820	A	A	62533820	2	1	132	1	0	0	0	0	0	0	0	1	2844	643	23	1		1	CCDC45	17	62533820	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	959484	62533820	18661390	525	118800											
SMURF2	64750	broad.mit.edu	37	chr17	62568061	62568061	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaagctcttcacaattgaTgttgctaagatccctgcaaa	6	11	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62568061	C	C	62568061	3	2	132	1	0	0	0	0	1	0	0	0	14934	1464	51	5	1415	5	SMURF2	17	62568061	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	34241	62568061	18627149	526	118801											
HELZ	9931	broad.mit.edu	37	chr17	65083055	65083055	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccggggatgaaaagttgaaaGaagattggttactgtggtcc	14	5	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65083055	C	C	65083055	3	2	132	1	0	0	0	0	1	0	0	0	7116	942	33	4	452	4	HELZ	17	65083055	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2514994	65083055	16112155	527	118802											
ARSG	22901	broad.mit.edu	37	chr17	66364735	66364735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggctctggcccacatgCacgtgcccttacctgtgact	10	14	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66364735	T	T	66364735	3	4	132	1	0	0	0	0	1	0	0	0	996	710	25	4	773	4	ARSG	17	66364735	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1281680	66364735	14830475	528	118803											
UBE2O	63893	broad.mit.edu	37	chr17	74392500	74392500	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttctcaggctccacagtcgGagaggtgggcgagcccgtca	14	13	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74392500	C	C	74392500	3	2	132	1	0	0	0	0	1	0	0	0	16994	1174	41	4	1380	4	UBE2O	17	74392500	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	8027765	74392500	6802710	529	118804											
C17orf70	80233	broad.mit.edu	37	chr17	79514605	79514605	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagatgggtctggggccCgtgccgcttgacagcagtgc	17	11	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79514605	A	A	79514605	2	1	132	1	0	0	0	0	0	0	0	1	1893	639	23	1		1	C17orf70	17	79514605	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	5122105	79514605	1680605	530	118805											
PCYT2	5833	broad.mit.edu	37	chr17	79867409	79867409	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatcggtgtgcacgcctacGatgaggtagtcacccatggc	12	13	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79867409	A	A	79867409	2	1	132	1	0	0	0	0	0	0	0	1	11706	1048	37	4		4	PCYT2	17	79867409	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	352804	79867409	1327801	531	118806											
GPS1	2873	broad.mit.edu	37	chr17	80014187	80014187	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaagttgttcttggagctgGagccacaggtccgagacatc	12	10	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80014187	A	A	80014187	3	1	132	1	0	0	0	0	1	0	0	0	6798	1175	41	4	1158	4	GPS1	17	80014187	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	146778	80014187	1181023	532	118807											
FOXK2	3607	broad.mit.edu	37	chr17	80542037	80542037	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaaactcgctgtcatccagGaagcccggtttgcccagagc	10	15	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80542037	A	A	80542037	3	1	132	1	0	0	0	0	1	0	0	0	6075	1175	41	4	1274	4	FOXK2	17	80542037	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	527850	80542037	653173	533	118808											
DLGAP1	9229	broad.mit.edu	37	chr18	3729134	3729134	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagggcccgcgcactcaCccgtgctgctctggatggtc	14	15	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3729134	A	A	3729134	5	1	132	1	0	0	0	0	0	0	1	0	4599	521	18	3	1369	3	DLGAP1	18	3729134	Splice_Site	SNP	C	TCGA-49-4486-01A-01D-1265-08		3729134	74348114	534	118809											
ARHGAP28	79822	broad.mit.edu	37	chr18	6889985	6889985	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggcaccaaaccttttcttCagtagaagcaaacactctga	6	11	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6889985	T	T	6889985	2	4	132	1	0	0	0	0	0	0	0	1	879	825	29	4		4	ARHGAP28	18	6889985	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	3160851	6889985	71187263	535	118810											
ARHGAP28	79822	broad.mit.edu	37	chr18	6890048	6890048	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacactgcggcccacatcatCcgcctaatgcttaagtacca	6	15	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6890048	T	T	6890048	2	4	132	1	0	0	0	0	0	0	0	1	879	845	30	4		4	ARHGAP28	18	6890048	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	63	6890048	71187200	536	118811											
TWSG1	57045	broad.mit.edu	37	chr18	9337426	9337426	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtttatatacagatatagAgtgcatatatcatatagagt	7	3	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9337426	T	T	9337426	1	4	132	0	1	0	0	0	0	0	0	0	16911	319	11	5		5	TWSG1	18	9337426	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	2447378	9337426	68739822	537	118812											
SPIRE1	56907	broad.mit.edu	37	chr18	12454314	12454314	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggactggccatccttctactCttctgatcaatcaactttaa	5	12	5	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12454314	G	G	12454314	1	3	132	0	1	0	0	0	0	0	0	0	15189	928	32	4		4	SPIRE1	18	12454314	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3116888	12454314	65622934	538	118813											
OSBPL1A	114876	broad.mit.edu	37	chr18	21819437	21819437	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattaattgcttttgatccAgttcaactgcaatatcagaa	5	7	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21819437	T	T	21819437	1	4	132	0	1	0	0	0	0	0	0	0	11371	203	7	5		5	OSBPL1A	18	21819437	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	9365123	21819437	56257811	539	118814											
ACAA2	10449	broad.mit.edu	37	chr18	47329299	47329299	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcgaataatctcactgTgaaaccttacacaatttaaa	4	9	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47329299	A	A	47329299	1	1	132	0	1	0	0	0	0	0	0	0	105	1711	59	5		5	ACAA2	18	47329299	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	25509862	47329299	30747949	540	118815											
SERPINB4	6318	broad.mit.edu	37	chr18	61328318	61328318	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcagtgttgtctttggCtcctaagaggaccatcccta	10	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61328318	T	T	61328318	3	4	132	1	0	0	0	0	1	0	0	0	14216	797	28	4		4	SERPINB4	18	61328318	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	13999019	61328318	16748930	541	118816											
SERPINB10	5273	broad.mit.edu	37	chr18	61602377	61602378	+	Missense_Mutation	DNP	CC	TT	TT													atagatatacgaattagagtCccatccattgaattcaatgc							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	61602378	TT	TT	61602377	3	4	132	1	0	0	0	0	1	0	0	0	14210	842	30	4	1121	4	SERPINB10	18	61602377	Missense_Mutation	DNP	CC	TCGA-49-4486-01A-01D-1265-08	274059	61602377	16474871	542	118817											
RTTN	25914	broad.mit.edu	37	chr18	67741268	67741268	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttaacatggacaccctcCtaggaactgtaacaattaat	6	9	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67741268	T	T	67741268	1	4	132	0	1	0	0	0	0	0	0	0	13848	696	24	4		4	RTTN	18	67741268	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	6138891	67741268	10335980	543	118818											
RTTN	25914	broad.mit.edu	37	chr18	67760096	67760096	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattctcaatggtatataaaGataaatatataactgtctac	4	5	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67760096	C	C	67760096	1	2	132	0	1	0	0	0	0	0	0	0	13848	957	33	4		4	RTTN	18	67760096	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	18828	67760096	10317152	544	118819											
MIER2	54531	broad.mit.edu	37	chr19	326574	326574	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcagaagagccaggctctCtgtcttcatcagccaggaaa	11	11	4	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	326574	G	G	326574	3	3	132	1	0	0	0	0	1	0	0	0	9674	913	32	4	1155	4	MIER2	19	326574	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08		326574	58802409	545	118820											
PTBP1	5725	broad.mit.edu	37	chr19	808703	808703	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccgcttcaagaagccgggCtccaagaacttccagaacat	8	14	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	808703	T	T	808703	2	4	132	1	0	0	0	0	0	0	0	1	12831	784	28	4		4	PTBP1	19	808703	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	482129	808703	58320280	546	118821											
MED16	10025	broad.mit.edu	37	chr19	876967	876967	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggccccacctgccacgggCccccacctgctgcagggcag	14	19	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	876967	G	G	876967	1	3	132	0	1	0	0	0	0	0	0	0	9527	754	26	4		4	MED16	19	876967	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	68264	876967	58252016	547	118822											
STK11	6794	broad.mit.edu	37	chr19	1220449	1220449	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaggacatcaagccggggaAcctgctgctcaccaccggtg	12	14	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220449	T	T	1220449	3	4	132	1	0	0	0	0	1	0	0	0	15405	43	2	5	556	5	STK11	19	1220449	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	343482	1220449	57908534	548	118823											
TCF3	6929	broad.mit.edu	37	chr19	1619133	1619133	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtaggagtcgggaggccgaGacaggtcagggagggtgcct	20	7	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1619133	C	C	1619133	3	2	132	1	0	0	0	0	1	0	0	0	15816	942	33	4	784	4	TCF3	19	1619133	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	398684	1619133	57509850	549	118824											
DOT1L	84444	broad.mit.edu	37	chr19	2210737	2210737	+	Frame_Shift_Del	DEL	G	-	-													agatggctggccgcaagcgcGggcgccccaagaagatgaac							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2210737	-	-	2210737	7	5	132	1	0	1	0	1	0	0	0	0	4749	1116	39	0	1288	0	DOT1L	19	2210737	Frame_Shift_Del	DEL	G	TCGA-49-4486-01A-01D-1265-08	591604	2210737	56918246	550	118825											
DOT1L	84444	broad.mit.edu	37	chr19	2222272	2222272	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccctccgattccggcttctCagatcctgagagtgaagcca	10	14	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2222272	G	G	2222272	4	3	132	1	0	0	0	0	0	1	0	0	4749	838	29	4	3198	4	DOT1L	19	2222272	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	11535	2222272	56906711	551	118826											
NFIC	4782	broad.mit.edu	37	chr19	3462611	3462611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgttagagcctgggatGgggaaactgaggtcacaggg	18	5	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3462611	T	T	3462611	1	4	132	0	1	0	0	0	0	0	0	0	10467	1363	47	2		2	NFIC	19	3462611	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1240339	3462611	55666372	552	118827											
ATCAY	85300	broad.mit.edu	37	chr19	3920811	3920811	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaaggtgggtgtgatgcaGagtggtcttcgtgctgtttt	15	5	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3920811	A	A	3920811	1	1	132	0	1	0	0	0	0	0	0	0	1081	957	33	4		4	ATCAY	19	3920811	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	458200	3920811	55208172	553	118828											
CREB3L3	84699	broad.mit.edu	37	chr19	4171672	4171672	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttctccagaactttgcaCaacgatgctgcctcccgcgt	9	14	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4171672	T	T	4171672	2	4	132	1	0	0	0	0	0	0	0	1	3890	477	17	4		4	CREB3L3	19	4171672	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	250861	4171672	54957311	554	118829											
SH3GL1	6455	broad.mit.edu	37	chr19	4363690	4363690	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccaagggcataggtcttctCaggatgtgacaccccgagct	11	13	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4363690	G	G	4363690	1	3	132	0	1	0	0	0	0	0	0	0	14363	841	29	4		4	SH3GL1	19	4363690	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	192018	4363690	54765293	555	118830											
INSR	3643	broad.mit.edu	37	chr19	7125477	7125477	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctgccccagctctcgaagGagggtgatcttctctcgaga	11	14	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7125477	T	T	7125477	2	4	132	1	0	0	0	0	0	0	0	1	7843	1161	41	3		3	INSR	19	7125477	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2761787	7125477	52003506	556	118831											
RDH8	50700	broad.mit.edu	37	chr19	10132255	10132255	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaccacccctgcgccgaCagaccaacatccgctactcg	7	20	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10132255	T	T	10132255	4	4	132	1	0	0	0	0	0	1	0	0	13304	479	17	4	788	4	RDH8	19	10132255	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	3006778	10132255	48996728	557	118832											
KEAP1	9817	broad.mit.edu	37	chr19	10602581	10602581	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcgactgtcggaagtagcCgcccgcggtgtagatcaggc	16	11	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10602581	T	T	10602581	3	4	132	1	0	0	0	0	1	0	0	0	8211	652	23	4	893	4	KEAP1	19	10602581	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	470326	10602581	48526402	558	118833											
QTRT1	81890	broad.mit.edu	37	chr19	10817973	10817973	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgttgcccccatctcaccAtcaggctcggacatcatcat	7	15	4	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10817973	G	G	10817973	1	3	132	0	1	0	0	0	0	0	0	0	12993	232	8	5		5	QTRT1	19	10817973	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	215392	10817973	48311010	559	118834											
PRKCSH	5589	broad.mit.edu	37	chr19	11560101	11560101	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgcctcctgtgcgggaaAgagaccatggtgaccagcac	14	12	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11560101	G	G	11560101	2	3	132	1	0	0	0	0	0	0	0	1	12622	69	3	5		5	PRKCSH	19	11560101	Silent	SNP	A	TCGA-49-4486-01A-01D-1265-08	742128	11560101	47568882	560	118835											
ZNF878	729747	broad.mit.edu	37	chr19	12157506	12157506	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccctgtagagatttttctGggaaggatccagcaaagccc	10	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12157506	A	A	12157506	4	1	132	1	0	0	0	0	0	1	0	0	18325	1357	47	4	1534	4	ZNF878	19	12157506	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	597405	12157506	46971477	561	118836											
BEST2	54831	broad.mit.edu	37	chr19	12864192	12864192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtccaaccccaagtccccCgttcccatgtccctgagaaa	7	18	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12864192	A	A	12864192	1	1	132	0	1	0	0	0	0	0	0	0	1410	667	23	1		1	BEST2	19	12864192	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	706686	12864192	46264791	562	118837											
SYCE2	256126	broad.mit.edu	37	chr19	13011064	13011064	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagagctgctcatacaacaGtgggacatgacaacggtttg	11	9	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13011064	C	C	13011064	1	2	132	0	1	0	0	0	0	0	0	0	15548	1044	36	4		4	SYCE2	19	13011064	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	146872	13011064	46117919	563	118838											
UPF1	5976	broad.mit.edu	37	chr19	18963776	18963776	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctggaggctaaccggggctCttgtttttcatgtgctcaga	13	9	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18963776	G	G	18963776	1	3	132	0	1	0	0	0	0	0	0	0	17129	928	32	4		4	UPF1	19	18963776	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	5952712	18963776	40165207	564	118839											
RFXANK	8625	broad.mit.edu	37	chr19	19312513	19312513	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagagcaacctggtgccCgctgaccctgagtgaaggcc	12	14	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19312513	A	A	19312513	2	1	132	1	0	0	0	0	0	0	0	1	13377	639	23	1		1	RFXANK	19	19312513	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	348737	19312513	39816470	565	118840											
ZNF91	7644	broad.mit.edu	37	chr19	23542873	23542873	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctaaaagctttgccacattCttcacatttgtagggtttct	6	10	3	0	rs1816638		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23542873	G	G	23542873	3	3	132	1	0	0	0	0	1	0	0	0	18329	922	32	4	671	4	ZNF91	19	23542873	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4230360	23542873	35586110	566	118841											
ZNF781	163115	broad.mit.edu	37	chr19	38160502	38160502	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtaagtgttgagcaattAttgaatgctttgccacattc	9	6	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38160502	C	C	38160502	3	2	132	1	0	0	0	0	1	0	0	0	18283	449	16	5	439	5	ZNF781	19	38160502	Missense_Mutation	SNP	A	TCGA-49-4486-01A-01D-1265-08	14617629	38160502	20968481	567	118842											
PSMC4	5704	broad.mit.edu	37	chr19	40486423	40486423	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggggattagatcttcagctCaacttctgccagcaccacag	9	13	4	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40486423	G	G	40486423	1	3	132	0	1	0	0	0	0	0	0	0	12795	841	29	4		4	PSMC4	19	40486423	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2325921	40486423	18642560	568	118843											
AKT2	208	broad.mit.edu	37	chr19	40746077	40746077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacctgcccactccgcccCgacgaaggggagcaaggcct	11	18	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40746077	A	A	40746077	1	1	132	0	1	0	0	0	0	0	0	0	480	667	23	1		1	AKT2	19	40746077	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	259654	40746077	18382906	569	118844											
PSG5	5673	broad.mit.edu	37	chr19	43680050	43680050	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggtgactgggtcactGcgcatgccaccatctcggtc	12	13	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43680050	C	C	43680050	2	2	132	1	0	0	0	0	0	0	0	1	12764	1306	46	4		4	PSG5	19	43680050	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2933973	43680050	15448933	570	118845											
PVRL2	5819	broad.mit.edu	37	chr19	45375438	45375438	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggggtgacccctcccccatCaaaactgcctacactggctt	9	16	1	1	rs78446162		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45375438	T	T	45375438	1	4	132	0	1	0	0	0	0	0	0	0	12948	841	29	4		4	PVRL2	19	45375438	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1695388	45375438	13753545	571	118846											
EML2	24139	broad.mit.edu	37	chr19	46124837	46124837	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcccgtcccgcagggcgcaGagcccaaacacgccgccgtc	12	19	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46124837	A	A	46124837	2	1	132	1	0	0	0	0	0	0	0	1	5139	929	33	4		4	EML2	19	46124837	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	749399	46124837	13004146	572	118847											
IGFL2	147920	broad.mit.edu	37	chr19	46652280	46652280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcatgaggaccgactaccCcaggagtgtgctgggtaagt	15	9	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46652280	A	A	46652280	1	1	132	0	1	0	0	0	0	0	0	0	7657	623	22	2		2	IGFL2	19	46652280	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	527443	46652280	12476703	573	118848											
CABP5	56344	broad.mit.edu	37	chr19	48544822	48544822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagcaactggggaagacGgtgttaccttcaatctcatc	11	9	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48544822	T	T	48544822	1	4	132	0	1	0	0	0	0	0	0	0	2560	1131	39	1		1	CABP5	19	48544822	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1892542	48544822	10584161	574	118849											
GRIN2D	2906	broad.mit.edu	37	chr19	48908350	48908350	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctacgtctggttcatggtGgggccccagctggctggagg	18	10	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48908350	A	A	48908350	2	1	132	1	0	0	0	0	0	0	0	1	6848	1335	47	4		4	GRIN2D	19	48908350	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	363528	48908350	10220633	575	118850											
KLK1	3816	broad.mit.edu	37	chr19	51325133	51325133	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgggggcgcagcacctgcaGaggcggtgctgggtcaggaa	19	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51325133	C	C	51325133	1	2	132	0	1	0	0	0	0	0	0	0	8468	957	33	4		4	KLK1	19	51325133	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	2416783	51325133	7803850	576	118851											
SIGLEC9	27180	broad.mit.edu	37	chr19	51629008	51629008	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccccctggacccctccacCacccgctcctcggtgctcac	6	24	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51629008	T	T	51629008	2	4	132	1	0	0	0	0	0	0	0	1	14428	581	21	4		4	SIGLEC9	19	51629008	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	303875	51629008	7499975	577	118852											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918543	51918543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggcagctccaggacccCggggtctgagggctgggagg	19	12	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51918543	A	A	51918543	3	1	132	1	0	0	0	0	1	0	0	0	14419	652	23	1	891	1	SIGLEC10	19	51918543	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	289535	51918543	7210440	578	118853											
SIGLEC5	8778	broad.mit.edu	37	chr19	52130914	52130914	+	Frame_Shift_Del	DEL	G	-	-													tcaagccgccagcacagggaGggggccggccgggctcgaaa							TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52130914	-	-	52130914	7	5	132	1	0	1	0	1	0	0	0	0	14424	987	35	0	588	0	SIGLEC5	19	52130914	Frame_Shift_Del	DEL	G	TCGA-49-4486-01A-01D-1265-08	212371	52130914	6998069	579	118854											
BIRC8	112401	broad.mit.edu	37	chr19	53793072	53793072	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagattttacaaagcttctCctcttgcagacgccttagcg	8	12	2	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53793072	T	T	53793072	3	4	132	1	0	0	0	0	1	0	0	0	1446	864	30	4	158	4	BIRC8	19	53793072	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1662158	53793072	5335911	580	118855											
ZNF587	84914	broad.mit.edu	37	chr19	58301567	58301567	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggaggatgggcaagggtaGatatgttggggaagtggatt	19	1	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58301567	C	C	58301567	1	2	132	0	1	0	0	0	0	0	0	0	18147	957	33	4		4	ZNF587	19	58301567	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	4508495	58301567	827416	581	118856											
ZNF256	10172	broad.mit.edu	37	chr19	58455413	58455413	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagtaaacagccacgtcctCaaaggtcacaatgccctgcc	8	14	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58455413	G	G	58455413	3	3	132	1	0	0	0	0	1	0	0	0	17925	835	29	4	1842	4	ZNF256	19	58455413	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	153846	58455413	673570	582	118857											
PANK2	80025	broad.mit.edu	37	chr20	3897586	3897586	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcacagctttggaaacatGatgagcaaggagaagcgaga	12	7	1	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3897586	C	C	3897586	3	2	132	1	0	0	0	0	1	0	0	0	11511	1290	45	4	1443	4	PANK2	20	3897586	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08		3897586	59127934	583	118858											
LRRN4	164312	broad.mit.edu	37	chr20	6022399	6022399	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgtcctctggccgggctGaggcgagcttatgctgcggt	17	10	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6022399	C	C	6022399	3	2	132	1	0	0	0	0	1	0	0	0	9124	1299	45	4	734	4	LRRN4	20	6022399	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2124813	6022399	57003121	584	118859											
FLRT3	23767	broad.mit.edu	37	chr20	14306198	14306198	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagtctgctgtgagtccttCagcatcatgagtgtgagtga	12	8	3	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14306198	T	T	14306198	1	4	132	0	1	0	0	0	0	0	0	0	5998	841	29	4		4	FLRT3	20	14306198	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	8283799	14306198	48719322	585	118860											
ZNF337	26152	broad.mit.edu	37	chr20	25655849	25655849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgacttactggtatagcctCgcttacactcctggcaaaca	7	13	0	1	rs146305250	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25655849	A	A	25655849	3	1	132	1	0	0	0	0	1	0	0	0	17979	884	31	3	184	3	ZNF337	20	25655849	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	11349651	25655849	37369671	586	118861											
DNMT3B	1789	broad.mit.edu	37	chr20	31369094	31369094	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggagaaaagcccctattaGcaaggccgttccccagactg	10	13	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31369094	A	A	31369094	1	1	132	0	1	0	0	0	0	0	0	0	4717	986	34	4		4	DNMT3B	20	31369094	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	5713245	31369094	31656426	587	118862											
ACSS2	55902	broad.mit.edu	37	chr20	33508916	33508916	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagccatccgtctgctcatGaagtttggagatgagcctgt	11	10	2	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33508916	A	A	33508916	3	1	132	1	0	0	0	0	1	0	0	0	189	1290	45	4	1332	4	ACSS2	20	33508916	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	2139822	33508916	29516604	588	118863											
RPN2	6185	broad.mit.edu	37	chr20	35826748	35826748	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaacgcctttgcttttcCtggttcactacatgtgtcac	6	11	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35826748	A	A	35826748	1	1	132	0	1	0	0	0	0	0	0	0	13719	696	24	2		2	RPN2	20	35826748	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	2317832	35826748	27198772	589	118864											
RPN2	6185	broad.mit.edu	37	chr20	35833324	35833324	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtacctatctaacaattttCaggcatgaaacccaaagggg	9	9	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35833324	T	T	35833324	1	4	132	0	1	0	0	0	0	0	0	0	13719	841	29	4		4	RPN2	20	35833324	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	6576	35833324	27192196	590	118865											
CHD6	84181	broad.mit.edu	37	chr20	40122243	40122243	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacttttgcaggatctacatCttcctctagctcccacgtgc	6	14	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40122243	T	T	40122243	3	4	132	1	0	0	0	0	1	0	0	0	3360	913	32	4	7010	4	CHD6	20	40122243	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	4288919	40122243	22903277	591	118866											
TP53TG5	27296	broad.mit.edu	37	chr20	44006895	44006895	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgctggggctgtgagacctCagagatgaatggagcaacac	14	8	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44006895	G	G	44006895	1	3	132	0	1	0	0	0	0	0	0	0	16515	841	29	4		4	TP53TG5	20	44006895	5'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	3884652	44006895	19018625	592	118867											
PLTP	5360	broad.mit.edu	37	chr20	44539798	44539798	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccccacttactcagagaTgttgtagtagaagtggcctt	10	11	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44539798	C	C	44539798	3	2	132	1	0	0	0	0	1	0	0	0	12209	1464	51	5	1344	5	PLTP	20	44539798	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	532903	44539798	18485722	593	118868											
B4GALT5	9334	broad.mit.edu	37	chr20	48260221	48260221	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaaaagggattaagaggtCagaaaatgataggtttccct	13	4	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48260221	G	G	48260221	1	3	132	0	1	0	0	0	0	0	0	0	1279	841	29	4		4	B4GALT5	20	48260221	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	3720423	48260221	14765299	594	118869											
FAM65C	140876	broad.mit.edu	37	chr20	49209728	49209728	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacctgctccaggagcctgcGgcacgctggccaaaggggag	15	14	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49209728	C	C	49209728	3	2	132	1	0	0	0	0	1	0	0	0	5652	1116	39	4	654	4	FAM65C	20	49209728	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	949507	49209728	13815792	595	118870											
COL9A3	1299	broad.mit.edu	37	chr20	61454067	61454067	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcctggagaggggcttgtCcatactggcaagaaggcagg	17	8	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61454067	A	A	61454067	1	1	132	0	1	0	0	0	0	0	0	0	3741	870	30	3		3	COL9A3	20	61454067	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	12244339	61454067	1571453	596	118871											
SAMSN1	64092	broad.mit.edu	37	chr21	15858201	15858201	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaagagttaaaatggaatGcatctgtagatatatagttg	10	2	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15858201	A	A	15858201	1	1	132	0	1	0	0	0	0	0	0	0	13941	1334	46	4		4	SAMSN1	21	15858201	3'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08		15858201	32271694	597	118872											
RCAN1	1827	broad.mit.edu	37	chr21	35899012	35899012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgccacacaggcaatcagGgagctaaaactgtagttaaa	9	8	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35899012	T	T	35899012	1	4	132	0	1	0	0	0	0	0	0	0	13276	1219	43	2		2	RCAN1	21	35899012	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	20040811	35899012	12230883	598	118873											
SETD4	54093	broad.mit.edu	37	chr21	37420692	37420692	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgaaataatcatctgtccCtcctggccaaaaggaaagta	7	10	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37420692	G	G	37420692	3	3	132	1	0	0	0	0	1	0	0	0	14246	680	24	4	1163	4	SETD4	21	37420692	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1521680	37420692	10709203	599	118874											
MORC3	23515	broad.mit.edu	37	chr21	37732124	37732124	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacccagcctaattttgaaaGagttacgtcataatttttag	6	8	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37732124	C	C	37732124	1	2	132	0	1	0	0	0	0	0	0	0	9797	957	33	4		4	MORC3	21	37732124	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	311432	37732124	10397771	600	118875											
MORC3	23515	broad.mit.edu	37	chr21	37732149	37732149	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgtcataatttttaggaaaGgaattaaataatggcatctt	7	4	2	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37732149	C	C	37732149	1	2	132	0	1	0	0	0	0	0	0	0	9797	1015	35	4		4	MORC3	21	37732149	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	25	37732149	10397746	601	118876											
TMPRSS3	64699	broad.mit.edu	37	chr21	43810005	43810005	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactacttggctaggtatttGagatcctactaaataatgaa	7	6	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43810005	A	A	43810005	1	1	132	0	1	0	0	0	0	0	0	0	16371	1305	45	4		4	TMPRSS3	21	43810005	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	6077856	43810005	4319890	602	118877											
TRPM2	7226	broad.mit.edu	37	chr21	45846542	45846542	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaactccctgttttgcgacaGacggagttcctgatctatga	9	10	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45846542	C	C	45846542	5	2	132	1	0	0	0	0	0	0	1	0	16711	956	33	4	3897	4	TRPM2	21	45846542	Splice_Site	SNP	G	TCGA-49-4486-01A-01D-1265-08	2036537	45846542	2283353	603	118878											
COL18A1	80781	broad.mit.edu	37	chr21	46908346	46908346	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagggacctcccggcctGccgggacttaaggtcagtga	14	12	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46908346	T	T	46908346	2	4	132	1	0	0	0	0	0	0	0	1	3707	1306	46	3		3	COL18A1	21	46908346	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	1061804	46908346	1221549	604	118879											
PI4KA	5297	broad.mit.edu	37	chr22	21174157	21174157	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgctcgcgagattcctatCaggcatgggatagcatactt	10	9	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21174157	G	G	21174157	2	3	132	1	0	0	0	0	0	0	0	1	11968	813	29	4		4	PI4KA	22	21174157	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08		21174157	30130409	605	118880											
CRKL	1399	broad.mit.edu	37	chr22	21288146	21288146	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctggaatatgtacggactCtgtatgattttcctgggaat	10	7	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21288146	G	G	21288146	3	3	132	1	0	0	0	0	1	0	0	0	3917	912	32	4	397	4	CRKL	22	21288146	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	113989	21288146	30016420	606	118881											
RGL4	266747	broad.mit.edu	37	chr22	24041092	24041092	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcaacatcctgcagtggCtgggaacccaccgggatgct	13	13	0	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24041092	A	A	24041092	1	1	132	0	1	0	0	0	0	0	0	0	13387	812	28	3		3	RGL4	22	24041092	3'UTR	SNP	C	TCGA-49-4486-01A-01D-1265-08	2752946	24041092	27263474	607	118882											
MYO18B	84700	broad.mit.edu	37	chr22	26317265	26317265	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggagaagcgacttcggagAgacctcaggaggacacatgc	15	9	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26317265	G	G	26317265	2	3	132	1	0	0	0	0	0	0	0	1	10160	301	11	5		5	MYO18B	22	26317265	Silent	SNP	A	TCGA-49-4486-01A-01D-1265-08	2276173	26317265	24987301	608	118883											
PITPNB	23760	broad.mit.edu	37	chr22	28310287	28310287	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tataccaataaaatgatgcaGaagcaagaaaaactcacctc	5	9	1	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28310287	A	A	28310287	1	1	132	0	1	0	0	0	0	0	0	0	12043	957	33	4		4	PITPNB	22	28310287	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1993022	28310287	22994279	609	118884											
NF2	4771	broad.mit.edu	37	chr22	30077432	30077432	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accctcttgccggcagagtgGaatacatggaaaagagcaag	12	9	1	2	rs74315505		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30077432	C	C	30077432	3	2	132	1	0	0	0	0	1	0	0	0	10452	1175	41	4	1637	4	NF2	22	30077432	Missense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08	1767145	30077432	21227134	610	118885											
RNF185	91445	broad.mit.edu	37	chr22	31588713	31588713	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcatttcattttactttGtctttcatcagctctggttg	7	8	5	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31588713	T	T	31588713	1	4	132	0	1	0	0	0	0	0	0	0	13579	1392	48	3		3	RNF185	22	31588713	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	1511281	31588713	19715853	611	118886											
MICALL1	85377	broad.mit.edu	37	chr22	38320660	38320660	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggctcactctcctttccCatctagggagactgcacgaa	8	15	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38320660	T	T	38320660	1	4	132	0	1	0	0	0	0	0	0	0	9666	609	21	4		4	MICALL1	22	38320660	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	6731947	38320660	12983906	612	118887											
SMCR7L	54471	broad.mit.edu	37	chr22	39910294	39910294	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggatacactctgtattgctCattgtctgagccagaggtgc	11	9	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39910294	G	G	39910294	4	3	132	1	0	0	0	0	0	1	0	0	14905	838	29	4	1372	4	SMCR7L	22	39910294	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1589634	39910294	11394272	613	118888											
EFCAB6	64800	broad.mit.edu	37	chr22	44107532	44107532	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgaaattagagtgtggcGttcataaatatcaacttcat	7	5	3	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44107532	A	A	44107532	1	1	132	0	1	0	0	0	0	0	0	0	4979	1160	40	4		4	EFCAB6	22	44107532	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	4197238	44107532	7197034	614	118889											
C22orf9	23313	broad.mit.edu	37	chr22	45601975	45601975	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcaatgacagctcactgTagcctcaacctcctgggctc	10	14	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45601975	C	C	45601975	1	2	132	0	1	0	0	0	0	0	0	0	2173	1653	57	5		5	C22orf9	22	45601975	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	1494443	45601975	5702591	615	118890											
CELSR1	9620	broad.mit.edu	37	chr22	46931714	46931714	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggggtagttgtcgttctCgtcctccacctcgatgtaca	11	12	1	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46931714	A	A	46931714	4	1	132	1	0	0	0	0	0	1	0	0	3251	893	31	3	7830	3	CELSR1	22	46931714	Nonsense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	1329739	46931714	4372852	616	118891											
PNPLA4	8228	broad.mit.edu	37	chrX	7889710	7889710	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttatatgaagtattgaaatCagcacttgctgatttcttca	6	6	3	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7889710	G	G	7889710	1	3	132	0	1	0	0	0	0	0	0	0	12262	841	29	4		4	PNPLA4	23	7889710	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08		7889710	147380850	617	118892											
MOSPD2	158747	broad.mit.edu	37	chrX	14937715	14937715	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctttcagtgtttggatttCtagtattcctgtttgtcatg	8	7	3	0			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14937715	G	G	14937715	1	3	132	0	1	0	0	0	0	0	0	0	9810	928	32	4		4	MOSPD2	23	14937715	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	7048005	14937715	140332845	618	118893											
PHKA2	5256	broad.mit.edu	37	chrX	18924680	18924680	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcagtccaatccggagtctCagcatctccacaaagaggct	8	13	3	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18924680	G	G	18924680	2	3	132	1	0	0	0	0	0	0	0	1	11939	813	29	4		4	PHKA2	23	18924680	Silent	SNP	C	TCGA-49-4486-01A-01D-1265-08	3986965	18924680	136345880	619	118894											
MAP3K15	389840	broad.mit.edu	37	chrX	19416229	19416229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattacaagagaatgacaGgttttgtggtaacacaatgc	9	7	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19416229	T	T	19416229	1	4	132	0	1	0	0	0	0	0	0	0	9341	1015	35	2		2	MAP3K15	23	19416229	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	491549	19416229	135854331	620	118895											
RPS6KA3	6197	broad.mit.edu	37	chrX	20174430	20174430	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttctttttctatggctcttGatactaatgaacattcttcc	4	10	4	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20174430	C	C	20174430	1	2	132	0	1	0	0	0	0	0	0	0	13763	1305	45	4		4	RPS6KA3	23	20174430	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	758201	20174430	135096130	621	118896											
SMPX	23676	broad.mit.edu	37	chrX	21762043	21762043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcgttgtgaagaaaaatgCgtctgaaaagtacatcttca	8	6	3	3	rs113604109		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21762043	A	A	21762043	1	1	132	0	1	0	0	0	0	0	0	0	14924	783	27	3		3	SMPX	23	21762043	Intron	SNP	C	TCGA-49-4486-01A-01D-1265-08	1587613	21762043	133508517	622	118897											
CXorf22	170063	broad.mit.edu	37	chrX	35988982	35988982	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaattacatgaaaactatTatgcaatgtatcttaaatat	4	4	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35988982	C	C	35988982	3	2	132	1	0	0	0	0	1	0	0	0	4135	1754	61	5	1954	5	CXorf22	23	35988982	Missense_Mutation	SNP	T	TCGA-49-4486-01A-01D-1265-08	14226939	35988982	119281578	623	118898											
KDM5C	8242	broad.mit.edu	37	chrX	53254005	53254005	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaagagggtctcggaactCggcccagctaggctcgaaca	13	13	1	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53254005	T	T	53254005	3	4	132	1	0	0	0	0	1	0	0	0	8205	893	31	4	4817	4	KDM5C	23	53254005	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	17265023	53254005	102016555	624	118899											
RLIM	51132	broad.mit.edu	37	chrX	73811938	73811938	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcattatctgccttaacatGgtctgaattgcaacagatgt	8	8	3	2	rs61754468	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73811938	C	C	73811938	2	2	132	1	0	0	0	0	0	0	0	1	13501	1335	47	4		4	RLIM	23	73811938	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	20557933	73811938	81458622	625	118900											
TAF9B	51616	broad.mit.edu	37	chrX	77394948	77394948	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcctgacggccctgacTagactgaaacgagcgtgcga	11	14	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77394948	A	A	77394948	1	1	132	0	1	0	0	0	0	0	0	0	15655	1537	53	5		5	TAF9B	23	77394948	Intron	SNP	T	TCGA-49-4486-01A-01D-1265-08	3583010	77394948	77875612	626	118901											
ESX1	80712	broad.mit.edu	37	chrX	103499568	103499568	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaagctgtgcacttctgcaGactctgtgcgtggttccgcg	12	11	2	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103499568	A	A	103499568	1	1	132	0	1	0	0	0	0	0	0	0	5305	957	33	4		4	ESX1	23	103499568	5'UTR	SNP	G	TCGA-49-4486-01A-01D-1265-08	26104620	103499568	51770992	627	118902											
COL4A6	1288	broad.mit.edu	37	chrX	107431041	107431041	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaaagtcaggtgtgaagAtctgtagagctaatcaccta	9	8	3	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107431041	G	G	107431041	1	3	132	0	1	0	0	0	0	0	0	0	3727	348	12	5		5	COL4A6	23	107431041	Intron	SNP	A	TCGA-49-4486-01A-01D-1265-08	3931473	107431041	47839519	628	118903											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299513	125299513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccgcatgagggggatgCgcgtgatgtggcctgactgc	17	10	0	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299513	A	A	125299513	3	1	132	1	0	0	0	0	1	0	0	0	4298	768	27	3	1000	3	DCAF12L2	23	125299513	Missense_Mutation	SNP	C	TCGA-49-4486-01A-01D-1265-08	17868472	125299513	29971047	629	118904											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685236	125685236	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatagttcccatggaggccTgcagggagaggccccccagc	14	14	0	1			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125685236	G	G	125685236	2	3	132	1	0	0	0	0	0	0	0	1	4297	1567	55	5		5	DCAF12L1	23	125685236	Silent	SNP	T	TCGA-49-4486-01A-01D-1265-08	385723	125685236	29585324	630	118905											
LDOC1	23641	broad.mit.edu	37	chrX	140270933	140270933	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggtgaggaggctgattaGgaatgccaccttcatggcgt	14	10	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140270933	A	A	140270933	2	1	132	1	0	0	0	0	0	0	0	1	8781	991	35	4		4	LDOC1	23	140270933	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	14585697	140270933	14999627	631	118906											
HCFC1	3054	broad.mit.edu	37	chrX	153221008	153221008	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacgggctggggagacacacGaggaggagagttagtgctgc	18	8	0	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153221008	C	C	153221008	1	2	132	0	1	0	0	0	0	0	0	0	7057	1073	37	4		4	HCFC1	23	153221008	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	12950075	153221008	2049552	632	118907											
HCFC1	3054	broad.mit.edu	37	chrX	153223608	153223608	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgacttgtgcactgtgatGatagggcgggtagacgtgtt	15	7	0	4			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153223608	A	A	153223608	2	1	132	1	0	0	0	0	0	0	0	1	7057	1280	45	4		4	HCFC1	23	153223608	Silent	SNP	G	TCGA-49-4486-01A-01D-1265-08	2600	153223608	2046952	633	118908											
IL9R	3581	broad.mit.edu	37	chrX	155232527	155232527	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatggggagcacccctccaGagagggatgatttgcacagg	14	10	1	2			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155232527	T	T	155232527	1	4	132	0	1	0	0	0	0	0	0	0	7778	957	33	3		3	IL9R	23	155232527	Intron	SNP	G	TCGA-49-4486-01A-01D-1265-08	2008919	155232527	38033	634	118909											
UTY	7404	broad.mit.edu	37	chrY	15372253	15372253	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagcttctctcaatgtctGatattgcttcagaattttca	6	8	5	3			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15372253	A	A	15372253	4	1	132	1	0	0	0	0	0	1	0	0	17234	1299	45	4	304	4	UTY	24	15372253	Nonsense_Mutation	SNP	G	TCGA-49-4486-01A-01D-1265-08		15372253	44001313	635	118910											
CHD5	26038	broad.mit.edu	37	chr1	6170448	6170448	+	Intron	DEL	A	-	-													cagccctggcccttcagaagAcagaccttaaacctgcgggc							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6170448	-	-	6170448	6	5	133	0	1	1	0	1	0	0	0	0	3359	290	10	0		0	CHD5	1	6170448	Intron	DEL	A	TCGA-49-4487-01A-21D-1855-08		6170448	243080173	1	118911											
ACOT7	11332	broad.mit.edu	37	chr1	6399565	6399565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgtaggtgatctccgCgctgacatgcgccacctcac	13	13	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6399565	A	A	6399565	3	1	133	1	0	0	0	0	1	0	0	0	155	768	27	3	794	3	ACOT7	1	6399565	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	229117	6399565	242851056	2	118912											
KIF1B	23095	broad.mit.edu	37	chr1	10421840	10421840	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatctcaccaccacgctctCtgcgtagcctctttggcagc	8	16	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10421840	G	G	10421840	3	3	133	1	0	0	0	0	1	0	0	0	8354	912	32	4	5758	4	KIF1B	1	10421840	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	4022275	10421840	238828781	3	118913											
VPS13D	55187	broad.mit.edu	37	chr1	12401967	12401967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtcagtttatattacccCgagtcatctctgccaccaaa	6	13	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12401967	A	A	12401967	1	1	133	0	1	0	0	0	0	0	0	0	17319	667	23	1		1	VPS13D	1	12401967	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1980127	12401967	236848654	4	118914											
PRAMEF11	440560	broad.mit.edu	37	chr1	12888640	12888640	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgggtggaatccggatgctCatcttcatgaatctgcaggg	13	9	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12888640	A	A	12888640	1	1	133	0	1	0	0	0	0	0	0	0	12528	841	29	3		3	PRAMEF11	1	12888640	5'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	486673	12888640	236361981	5	118915											
PRAMEF4	400735	broad.mit.edu	37	chr1	12939843	12939843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttagttgactgatactcGggcactgggatagatgcttc	11	8	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12939843	T	T	12939843	3	4	133	1	0	0	0	0	1	0	0	0	12541	1116	39	1	481	1	PRAMEF4	1	12939843	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	51203	12939843	236310778	6	118916											
CELA2A	63036	broad.mit.edu	37	chr1	15792622	15792622	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgctgggggtgatggcGtgatctccagctgcaacgtg	16	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15792622	A	A	15792622	3	1	133	1	0	0	0	0	1	0	0	0	3241	1145	40	4	644	4	CELA2A	1	15792622	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2852779	15792622	233457999	7	118917											
NBPF1	55672	broad.mit.edu	37	chr1	16911788	16911788	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagtcccacccccacctgaTtgcaaacatggaaagttgct	7	14	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16911788	C	C	16911788	1	2	133	0	1	0	0	0	0	0	0	0	10286	1508	52	5		5	NBPF1	1	16911788	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	1119166	16911788	232338833	8	118918											
PADI4	23569	broad.mit.edu	37	chr1	17664568	17664568	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccttgtggacagggtgcCatcctgctggtgaactgtga	15	10	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17664568	T	T	17664568	2	4	133	1	0	0	0	0	0	0	0	1	11474	581	21	4		4	PADI4	1	17664568	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	752780	17664568	231586053	9	118919											
AKR7A2	8574	broad.mit.edu	37	chr1	19634651	19634651	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcagccccggccctcaCctggtacacagtgggcagga	12	16	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19634651	A	A	19634651	5	1	133	1	0	0	0	0	0	0	1	0	475	521	18	3	507	3	AKR7A2	1	19634651	Splice_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	1970083	19634651	229615970	10	118920											
NBL1	4681	broad.mit.edu	37	chr1	19934752	19934752	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgtcacggatctttctGgcaaacaaaccatctgccgt	7	13	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19934752	T	T	19934752	1	4	133	0	1	0	0	0	0	0	0	0	10284	1363	47	2		2	NBL1	1	19934752	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	300101	19934752	229315869	11	118921											
ALPL	249	broad.mit.edu	37	chr1	21887620	21887620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacagtgacggctgcccGcatcctcaagggtcagctcc	10	17	2	1	rs121918003		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21887620	T	T	21887620	3	4	133	1	0	0	0	0	1	0	0	0	547	1087	38	3	222	3	ALPL	1	21887620	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1952868	21887620	227363001	12	118922											
KDM1A	23028	broad.mit.edu	37	chr1	23382500	23382500	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctcgacagttacaaagttTtggaatggatgtcacacttt	9	7	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23382500	G	G	23382500	3	3	133	1	0	0	0	0	1	0	0	0	8192	1841	64	5	985	5	KDM1A	1	23382500	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	1494880	23382500	225868121	13	118923											
ZNF436	80818	broad.mit.edu	37	chr1	23689281	23689281	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttccaaaacttttcccacaCtcgttacagtcataaggcct	4	14	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23689281	G	G	23689281	3	3	133	1	0	0	0	0	1	0	0	0	18036	564	20	4	822	4	ZNF436	1	23689281	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	306781	23689281	225561340	14	118924											
EXTL1	2134	broad.mit.edu	37	chr1	26349661	26349661	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccccaggaccttccagcTgggacaggctatggtggctg	14	13	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26349661	A	A	26349661	3	1	133	1	0	0	0	0	1	0	0	0	5368	1580	55	5	526	5	EXTL1	1	26349661	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	2660380	26349661	222900960	15	118925											
PTPRU	10076	broad.mit.edu	37	chr1	29606249	29606249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggcagaagggaaatgggGggcatcctgggggtagttac	19	5	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29606249	T	T	29606249	1	4	133	0	1	0	0	0	0	0	0	0	12921	1247	43	2		2	PTPRU	1	29606249	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3256588	29606249	219644372	16	118926											
COL16A1	1307	broad.mit.edu	37	chr1	32138038	32138038	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttctcctctctggcctggCaatcccggaggaccaggtag	11	14	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32138038	T	T	32138038	2	4	133	1	0	0	0	0	0	0	0	1	3705	709	25	4		4	COL16A1	1	32138038	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	2531789	32138038	217112583	17	118927											
COL16A1	1307	broad.mit.edu	37	chr1	32155342	32155342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaccctgggcactcacCctggctggtacaggatcacc	11	15	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32155342	A	A	32155342	3	1	133	1	0	0	0	0	1	0	0	0	3705	637	22	2	3390	2	COL16A1	1	32155342	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	17304	32155342	217095279	18	118928											
BAI2	576	broad.mit.edu	37	chr1	32203823	32203823	+	Frame_Shift_Del	DEL	A	-	-													ggtccttgggcggctgggctAgtacagcaaaggtggacagg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32203823	-	-	32203823	7	5	133	1	0	1	0	1	0	0	0	0	1304	420	15	0	2071	0	BAI2	1	32203823	Frame_Shift_Del	DEL	A	TCGA-49-4487-01A-21D-1855-08	48481	32203823	217046798	19	118929											
LCK	3932	broad.mit.edu	37	chr1	32745303	32745303	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttctcaagaccccttcAggcatcaagttgaccatcaa	6	12	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32745303	C	C	32745303	2	2	133	1	0	0	0	0	0	0	0	1	8748	175	7	5		5	LCK	1	32745303	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	541480	32745303	216505318	20	118930											
CSMD2	114784	broad.mit.edu	37	chr1	34554703	34554703	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccgcggtgatggtccaCgtgcagttggcgtaattggg	15	9	1	1	rs144913200	byFrequency;by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34554703	A	A	34554703	2	1	133	1	0	0	0	0	0	0	0	1	3979	523	19	3		3	CSMD2	1	34554703	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1809400	34554703	214695918	21	118931											
KIAA0319L	79932	broad.mit.edu	37	chr1	35940567	35940567	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagactgtcttatttctctCtttcttttgtgatcaaactc	4	11	5	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35940567	A	A	35940567	1	1	133	0	1	0	0	0	0	0	0	0	8239	928	32	3		3	KIAA0319L	1	35940567	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1385864	35940567	213310054	22	118932											
INPP5B	3633	broad.mit.edu	37	chr1	38341286	38341286	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccttcctacctctcgctTggacagggacacagaaggaa	10	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38341286	A	A	38341286	4	1	133	1	0	0	0	0	0	1	0	0	7825	1821	63	5	993	5	INPP5B	1	38341286	Nonsense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	2400719	38341286	210909335	23	118933											
MACF1	23499	broad.mit.edu	37	chr1	39844975	39844975	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagccttcaggctatcctCaacagaatggaggaggttca	11	9	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39844975	A	A	39844975	2	1	133	1	0	0	0	0	0	0	0	1	9232	813	29	3		3	MACF1	1	39844975	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1503689	39844975	209405646	24	118934											
TIE1	7075	broad.mit.edu	37	chr1	43777325	43777325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgtgcccatgccttacCctgagtctcctggcagtgcc	11	15	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43777325	A	A	43777325	1	1	133	0	1	0	0	0	0	0	0	0	16016	638	22	2		2	TIE1	1	43777325	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3932350	43777325	205473296	25	118935											
PTPRF	5792	broad.mit.edu	37	chr1	44019070	44019070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttgttttctttgtagGtctttctctctgcccccatg	7	12	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44019070	T	T	44019070	1	4	133	0	1	0	0	0	0	0	0	0	12909	1276	44	3		3	PTPRF	1	44019070	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	241745	44019070	205231551	26	118936											
DMBX1	127343	broad.mit.edu	37	chr1	46976740	46976740	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccccactccagatacccAgctggacactgagcagcccc	9	19	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46976740	C	C	46976740	3	2	133	1	0	0	0	0	1	0	0	0	4618	188	7	5	492	5	DMBX1	1	46976740	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	2957670	46976740	202273881	27	118937											
CYP4X1	260293	broad.mit.edu	37	chr1	47466782	47466782	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagagacaatgaattgagaTgtggtttcaggccccatttt	11	7	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47466782	C	C	47466782	1	2	133	0	1	0	0	0	0	0	0	0	4226	1479	51	5		5	CYP4X1	1	47466782	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	490042	47466782	201783839	28	118938											
ELAVL4	1996	broad.mit.edu	37	chr1	50661108	50661108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagagatcagggagctgGgctcagccctggcaccacag	15	11	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50661108	T	T	50661108	1	4	133	0	1	0	0	0	0	0	0	0	5094	1247	43	2		2	ELAVL4	1	50661108	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3194326	50661108	198589513	29	118939											
DMRTA2	63950	broad.mit.edu	37	chr1	50885323	50885323	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgtcgggtgataagggctTcaccggcggcggcagcgggc	19	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50885323	G	G	50885323	3	3	133	1	0	0	0	0	1	0	0	0	4629	1792	62	5	989	5	DMRTA2	1	50885323	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	224215	50885323	198365298	30	118940											
CPT2	1376	broad.mit.edu	37	chr1	53676038	53676038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtttacccaaacccagtcGggatgaactcttcactgatg	8	12	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53676038	T	T	53676038	3	4	133	1	0	0	0	0	1	0	0	0	3866	1116	39	1	706	1	CPT2	1	53676038	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2790715	53676038	195574583	31	118941											
LDLRAD1	388633	broad.mit.edu	37	chr1	54474854	54474854	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctgtgtcctggaacgctCtgtgcaccagggcactccct	11	14	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54474854	A	A	54474854	1	1	133	0	1	0	0	0	0	0	0	0	8777	928	32	3		3	LDLRAD1	1	54474854	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	798816	54474854	194775767	32	118942											
USP24	23358	broad.mit.edu	37	chr1	55591166	55591166	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaagtgcttctataccatCtttggtgaggtcttcatcta	8	8	5	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55591166	A	A	55591166	3	1	133	1	0	0	0	0	1	0	0	0	17181	913	32	3	4215	3	USP24	1	55591166	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1116312	55591166	193659455	33	118943											
FGGY	55277	broad.mit.edu	37	chr1	60091726	60091726	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaggccacagccaggtaaCtgctgtctctgttccctcta	8	13	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60091726	T	T	60091726	1	4	133	0	1	0	0	0	0	0	0	0	5928	580	20	4		4	FGGY	1	60091726	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4500560	60091726	189158895	34	118944											
PDE4B	5142	broad.mit.edu	37	chr1	66384348	66384348	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccagtaacacacttgggatCgacctctggagagggagaag	13	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66384348	T	T	66384348	2	4	133	1	0	0	0	0	0	0	0	1	11734	874	31	4		4	PDE4B	1	66384348	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	6292622	66384348	182866273	35	118945											
C1orf173	127254	broad.mit.edu	37	chr1	75086563	75086563	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcattgtaatagctgcattActatgtaaggatgttttatg	8	4	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75086563	G	G	75086563	2	3	133	1	0	0	0	0	0	0	0	1	2034	388	14	5		5	C1orf173	1	75086563	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	8702215	75086563	174164058	36	118946											
AK5	26289	broad.mit.edu	37	chr1	77763165	77763165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacacagaatttgcatcCcagatgaagtagtagttgta	11	6	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763165	A	A	77763165	1	1	133	0	1	0	0	0	0	0	0	0	443	638	22	2		2	AK5	1	77763165	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2676602	77763165	171487456	37	118947											
SSX2IP	117178	broad.mit.edu	37	chr1	85113323	85113323	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggcagatcttagtgacTatcctctccttcttttgtac	7	10	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85113323	A	A	85113323	1	1	133	0	1	0	0	0	0	0	0	0	15322	1537	53	5		5	SSX2IP	1	85113323	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	7350158	85113323	164137298	38	118948											
EPHX4	253152	broad.mit.edu	37	chr1	92511124	92511125	+	Missense_Mutation	DNP	GG	TT	TT													ttcttattggccatgactggGggggcatgattgcttggcta							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	92511125	TT	TT	92511124	3	4	133	1	0	0	0	0	1	0	0	0	5224	1232	43	2	525	2	EPHX4	1	92511124	Missense_Mutation	DNP	GG	TCGA-49-4487-01A-21D-1855-08	7397801	92511124	156739497	39	118949											
CDC14A	8556	broad.mit.edu	37	chr1	100950007	100950007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatggaacgatttggagaGgtaagttttccctaggagat	12	5	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100950007	T	T	100950007	3	4	133	1	0	0	0	0	1	0	0	0	3086	1014	35	2	1179	2	CDC14A	1	100950007	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	8438883	100950007	148300614	40	118950											
AMY2B	280	broad.mit.edu	37	chr1	104116939	104116939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actactttggaaatggccggGtgacagaattcaagtatggt	12	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104116939	T	T	104116939	3	4	133	1	0	0	0	0	1	0	0	0	595	1261	44	3	820	3	AMY2B	1	104116939	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3166932	104116939	145133682	41	118951											
GPSM2	29899	broad.mit.edu	37	chr1	109445818	109445818	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaaatcatgatcaagcaAtgcattttgctgaaaagcac	8	7	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109445818	G	G	109445818	3	3	133	1	0	0	0	0	1	0	0	0	6801	101	4	5	1054	5	GPSM2	1	109445818	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	5328879	109445818	139804803	42	118952											
GSTM2	2946	broad.mit.edu	37	chr1	110212024	110212024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggttgcaagatgcggggaGggaccgtggcctcctcctcg	16	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110212024	T	T	110212024	1	4	133	0	1	0	0	0	0	0	0	0	6904	1015	35	2		2	GSTM2	1	110212024	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	766206	110212024	139038597	43	118953											
ADORA3	140	broad.mit.edu	37	chr1	112106586	112106586	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttccattggtccaactgGtggtctctaccaactgccac	7	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112106586	T	T	112106586	1	4	133	0	1	0	0	0	0	0	0	0	329	1276	44	3		3	ADORA3	1	112106586	5'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	1894562	112106586	137144035	44	118954											
RSBN1	54665	broad.mit.edu	37	chr1	114354885	114354885	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcaccgctccgacctgcgcAgccatttcacccacaaacac	6	20	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114354885	C	C	114354885	2	2	133	1	0	0	0	0	0	0	0	1	13807	175	7	5		5	RSBN1	1	114354885	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	2248299	114354885	134895736	45	118955											
HSD3B2	3284	broad.mit.edu	37	chr1	119988122	119988122	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggactctgaaaaatggtGataccttgtacacttgtgcc	11	8	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119988122	T	T	119988122	1	4	133	0	1	0	0	0	0	0	0	0	7458	1305	45	3		3	HSD3B2	1	119988122	3'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	5633237	119988122	129262499	46	118956											
PPIAL4G	644591	broad.mit.edu	37	chr1	143767783	143767783	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcttgtctgcaaactgtttGatggagatgcggcccaaggg	13	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143767783	C	C	143767783	3	2	133	1	0	0	0	0	1	0	0	0	12419	1280	45	4	432	4	PPIAL4G	1	143767783	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	23779661	143767783	105482838	47	118957											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858490	149858490	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttattttgttgcgaggttCtgagcgttgtctgtgtttaa	11	5	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149858490	T	T	149858490	1	4	133	0	1	0	0	0	0	0	0	0	7245	928	32	4		4	HIST2H2AC	1	149858490	5'Flank	SNP	C	TCGA-49-4487-01A-21D-1855-08	6090707	149858490	99392131	48	118958											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858839	149858839	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaagtcaccatcgcccaGggcggcgttttgcctaacat	11	13	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149858839	C	C	149858839	3	2	133	1	0	0	0	0	1	0	0	0	7245	991	35	4	317	4	HIST2H2AC	1	149858839	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	349	149858839	99391782	49	118959											
ARNT	405	broad.mit.edu	37	chr1	150801768	150801768	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacagatgtatttcctatctCctcatggtcttttgcataga	6	9	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150801768	A	A	150801768	1	1	133	0	1	0	0	0	0	0	0	0	969	870	30	3		3	ARNT	1	150801768	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	942929	150801768	98448853	50	118960											
HRNR	388697	broad.mit.edu	37	chr1	152193051	152193051	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggactgtcctgagccagactCatgttgcccaaagccagaag	11	12	1	3	rs140445785		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152193051	A	A	152193051	4	1	133	1	0	0	0	0	0	1	0	0	7426	835	29	3	7502	3	HRNR	1	152193051	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1391283	152193051	97057570	51	118961											
HRNR	388697	broad.mit.edu	37	chr1	152193307	152193307	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgttcacccctagatgaCtgtcctgacctagagccgtg	10	13	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152193307	G	G	152193307	3	3	133	1	0	0	0	0	1	0	0	0	7426	564	20	4	7758	4	HRNR	1	152193307	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	256	152193307	97057314	52	118962											
FLG	2312	broad.mit.edu	37	chr1	152276015	152276015	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgatgggaccctgagtGtccagacctatctaccgatt	11	11	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152276015	A	A	152276015	3	1	133	1	0	0	0	0	1	0	0	0	5979	1377	48	4	842	4	FLG	1	152276015	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	82708	152276015	96974606	53	118963											
FLG	2312	broad.mit.edu	37	chr1	152286475	152286475	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtccctgtcctggctaactCtggatcccctacgctttctt	7	15	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152286475	A	A	152286475	3	1	133	1	0	0	0	0	1	0	0	0	5979	913	32	3	11302	3	FLG	1	152286475	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	10460	152286475	96964146	54	118964											
FLG2	388698	broad.mit.edu	37	chr1	152325867	152325867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtccatgagtagttccGtgtctcccatgaactgtgga	11	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152325867	T	T	152325867	3	4	133	1	0	0	0	0	1	0	0	0	5980	1136	40	3	2784	3	FLG2	1	152325867	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	39392	152325867	96924754	55	118965											
CRNN	49860	broad.mit.edu	37	chr1	152382335	152382335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcctgactcagtgcttGccccagtctgggcctgtcct	10	16	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152382335	T	T	152382335	3	4	133	1	0	0	0	0	1	0	0	0	3924	1319	46	3	268	3	CRNN	1	152382335	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	56468	152382335	96868286	56	118966											
LCE3A	353142	broad.mit.edu	37	chr1	152595394	152595394	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaggagttggagctctgGcaacggcaacggtgagacct	14	10	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152595394	T	T	152595394	4	4	133	1	0	0	0	0	0	1	0	0	8741	1195	42	3	86	3	LCE3A	1	152595394	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	213059	152595394	96655227	57	118967											
SPRR2G	6706	broad.mit.edu	37	chr1	153122650	153122650	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcataagagagacagtcCtgttggtggagcaattagct	12	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153122650	T	T	153122650	1	4	133	0	1	0	0	0	0	0	0	0	15220	696	24	4		4	SPRR2G	1	153122650	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	527256	153122650	96127971	58	118968											
PGLYRP3	114771	broad.mit.edu	37	chr1	153270495	153270495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcccaggggacaggatGttgaccacgtcactgtggcc	14	13	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153270495	T	T	153270495	3	4	133	1	0	0	0	0	1	0	0	0	11890	1368	48	3	66	3	PGLYRP3	1	153270495	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	147845	153270495	95980126	59	118969											
PGLYRP3	114771	broad.mit.edu	37	chr1	153277377	153277377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggagtggaggaagagaGtgtacacaactctccagcac	13	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153277377	T	T	153277377	1	4	133	0	1	0	0	0	0	0	0	0	11890	1044	36	3		3	PGLYRP3	1	153277377	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	6882	153277377	95973244	60	118970											
CRTC2	200186	broad.mit.edu	37	chr1	153923813	153923813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgttgggaccttctggcgtCggctgggcccgcgagcaaac	15	13	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153923813	A	A	153923813	3	1	133	1	0	0	0	0	1	0	0	0	3932	884	31	3	770	3	CRTC2	1	153923813	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	646436	153923813	95326808	61	118971											
CLK2	1196	broad.mit.edu	37	chr1	155233697	155233697	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaccctaagaaggaagTgacttctggacggtgggcac	12	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155233697	G	G	155233697	1	3	133	0	1	0	0	0	0	0	0	0	3569	1711	59	5		5	CLK2	1	155233697	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	1309884	155233697	94016924	62	118972											
SYT11	23208	broad.mit.edu	37	chr1	155829722	155829722	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactaaaatcgggcctgtggTggtgggtagtgggtagtggg	19	5	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155829722	A	A	155829722	1	1	133	0	1	0	0	0	0	0	0	0	15586	1711	59	5		5	SYT11	1	155829722	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	596025	155829722	93420899	63	118973											
FCRL1	115350	broad.mit.edu	37	chr1	157771368	157771368	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctggccccagtaggcaCtagagggagagacctgtgca	14	11	1	2	rs148618017	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157771368	A	A	157771368	5	1	133	1	0	0	0	0	0	0	1	0	5851	579	20	3	493	3	FCRL1	1	157771368	Splice_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	1941646	157771368	91479253	64	118974											
OR10K2	391107	broad.mit.edu	37	chr1	158389821	158389821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaatggagttataataGtgtaggatactgatattaga	10	2	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158389821	T	T	158389821	3	4	133	1	0	0	0	0	1	0	0	0	11008	1029	36	3	104	3	OR10K2	1	158389821	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	618453	158389821	90860800	65	118975											
OR10K2	391107	broad.mit.edu	37	chr1	158390091	158390091	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactaaagtggttatggtgaGatgccagcttgaggacagga	15	5	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158390091	A	A	158390091	3	1	133	1	0	0	0	0	1	0	0	0	11008	942	33	4	374	4	OR10K2	1	158390091	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	270	158390091	90860530	66	118976											
OR10R2	343406	broad.mit.edu	37	chr1	158450078	158450078	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactgcctgctattgggtgtGatgggttatgatcgctatgc	13	7	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158450078	A	A	158450078	2	1	133	1	0	0	0	0	0	0	0	1	11011	1277	45	4		4	OR10R2	1	158450078	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	59987	158450078	90800543	67	118977											
OR10R2	343406	broad.mit.edu	37	chr1	158450652	158450652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtgttgggcaagaaaGgttctctaaaactatataat	9	4	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450652	T	T	158450652	3	4	133	1	0	0	0	0	1	0	0	0	11011	1000	35	2	987	2	OR10R2	1	158450652	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	574	158450652	90799969	68	118978											
OR6Y1	391112	broad.mit.edu	37	chr1	158517803	158517803	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaggaaaatggagaaaaaGagaagctggaaggctggtcg	16	5	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158517803	T	T	158517803	2	4	133	1	0	0	0	0	0	0	0	1	11307	929	33	3		3	OR6Y1	1	158517803	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	67151	158517803	90732818	69	118979											
SPTA1	6708	broad.mit.edu	37	chr1	158585228	158585228	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagagagacaattagttGcccaggttaccagctcaaaa	10	8	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158585228	T	T	158585228	1	4	133	0	1	0	0	0	0	0	0	0	15234	1334	46	3		3	SPTA1	1	158585228	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	67425	158585228	90665393	70	118980											
SPTA1	6708	broad.mit.edu	37	chr1	158648053	158648053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttctcctttgctgtccCaaaggcaagtacatgatcca	6	13	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158648053	A	A	158648053	1	1	133	0	1	0	0	0	0	0	0	0	15234	609	21	2		2	SPTA1	1	158648053	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	62825	158648053	90602568	71	118981											
ATP1A2	477	broad.mit.edu	37	chr1	160105558	160105558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcttgggaagacaggcagCcatgcttcaggggctggggg	17	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160105558	A	A	160105558	1	1	133	0	1	0	0	0	0	0	0	0	1133	754	26	3		3	ATP1A2	1	160105558	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1457505	160105558	89145063	72	118982											
DCAF8	50717	broad.mit.edu	37	chr1	160210023	160210023	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtctgtgcctcgactttCtgtgctggtgcggttggggc	16	9	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160210023	T	T	160210023	3	4	133	1	0	0	0	0	1	0	0	0	4309	922	32	4	1650	4	DCAF8	1	160210023	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	104465	160210023	89040598	73	118983											
COPA	1314	broad.mit.edu	37	chr1	160287171	160287171	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctgctgtgcggagaccccCgggtgaagccactgtcatca	13	14	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160287171	G	G	160287171	1	3	133	0	1	0	0	0	0	0	0	0	3759	667	23	4		4	COPA	1	160287171	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	77148	160287171	88963450	74	118984											
NCSTN	23385	broad.mit.edu	37	chr1	160313247	160313247	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcggggtctccttcgccttCtgtctttctgcgtcctacta	9	14	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160313247	T	T	160313247	2	4	133	1	0	0	0	0	0	0	0	1	10336	912	32	4		4	NCSTN	1	160313247	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	26076	160313247	88937374	75	118985											
SLAMF1	6504	broad.mit.edu	37	chr1	160604432	160604432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcctgcatccgggccacGggctgaaggtctgggaattg	15	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160604432	T	T	160604432	3	4	133	1	0	0	0	0	1	0	0	0	14480	1116	39	1	356	1	SLAMF1	1	160604432	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	291185	160604432	88646189	76	118986											
B4GALT3	8703	broad.mit.edu	37	chr1	161142001	161142001	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtaacaattcccaggcagtCcttccttcttcctacctgtg	6	14	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161142001	T	T	161142001	1	4	133	0	1	0	0	0	0	0	0	0	1277	870	30	4		4	B4GALT3	1	161142001	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	537569	161142001	88108620	77	118987											
SELL	6402	broad.mit.edu	37	chr1	169680614	169680614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatctgagcatctaaacGtcttttaggctgaaaggctc	8	9	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169680614	T	T	169680614	1	4	133	0	1	0	0	0	0	0	0	0	14129	1160	40	3		3	SELL	1	169680614	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	8538613	169680614	79570007	78	118988											
KIFAP3	22920	broad.mit.edu	37	chr1	169993778	169993778	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagataaagaattagtataCtgaattaataatttagaaaa	6	1	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169993778	G	G	169993778	1	3	133	0	1	0	0	0	0	0	0	0	8381	580	20	4		4	KIFAP3	1	169993778	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	313164	169993778	79256843	79	118989											
BAT2L2	23215	broad.mit.edu	37	chr1	171492687	171492687	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgatatcttttactaatAacagtatgaatttgttgata	6	3	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171492687	C	C	171492687	1	2	133	0	1	0	0	0	0	0	0	0	1326	377	13	5		5	BAT2L2	1	171492687	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	1498909	171492687	77757934	80	118990											
TNR	7143	broad.mit.edu	37	chr1	175334108	175334108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaaggctactgtgaaaaCccctttcatcacctgctgcc	7	14	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334108	A	A	175334108	1	1	133	0	1	0	0	0	0	0	0	0	16461	522	18	3		3	TNR	1	175334108	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3841421	175334108	73916513	81	118991											
ABL2	27	broad.mit.edu	37	chr1	179095584	179095584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcgagatggacagctgCccagggctactctcactttc	11	13	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179095584	A	A	179095584	2	1	133	1	0	0	0	0	0	0	0	1	93	726	26	3		3	ABL2	1	179095584	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	3761476	179095584	70155037	82	118992											
C1orf125	126859	broad.mit.edu	37	chr1	179497545	179497545	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattccaaacctctatttgaAacagatgtgttgtcttcctg	6	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179497545	T	T	179497545	3	4	133	1	0	0	0	0	1	0	0	0	2013	11	1	5	2780	5	C1orf125	1	179497545	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	401961	179497545	69753076	83	118993											
CEP350	9857	broad.mit.edu	37	chr1	179989875	179989875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaagggcctcttcttaGtgaggggagtctctctgaag	14	8	4	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179989875	T	T	179989875	3	4	133	1	0	0	0	0	1	0	0	0	3284	1029	36	3	3008	3	CEP350	1	179989875	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	492330	179989875	69260746	84	118994											
LAMC1	3915	broad.mit.edu	37	chr1	183091404	183091404	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtaagtctgctcgcttcAtctgctttcagtgttccctt	8	12	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183091404	G	G	183091404	1	3	133	0	1	0	0	0	0	0	0	0	8686	232	8	5		5	LAMC1	1	183091404	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	3101529	183091404	66159217	85	118995											
GLT25D2	23127	broad.mit.edu	37	chr1	183909713	183909713	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcagttcagggagactcAcacgggatgcttgttgtaca	13	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183909713	T	T	183909713	5	4	133	1	0	0	0	0	0	0	1	0	6531	173	6	5	282	5	GLT25D2	1	183909713	Splice_Site	SNP	A	TCGA-49-4487-01A-21D-1855-08	818309	183909713	65340908	86	118996											
ASPM	259266	broad.mit.edu	37	chr1	197055854	197055854	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaagcacatcttgtttaTggtaagtgctcaataaatat	7	5	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197055854	C	C	197055854	1	2	133	0	1	0	0	0	0	0	0	0	1060	1479	51	5		5	ASPM	1	197055854	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	13146141	197055854	52194767	87	118997											
ASPM	259266	broad.mit.edu	37	chr1	197073257	197073257	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggaacggtaacattgctgGataaatagtgcagctgctct	11	7	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197073257	C	C	197073257	3	2	133	1	0	0	0	0	1	0	0	0	1060	1164	41	4	5353	4	ASPM	1	197073257	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	17403	197073257	52177364	88	118998											
LHX9	56956	broad.mit.edu	37	chr1	197881490	197881490	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggaggaaggcccggctttGctccaagccgcgtccctacc	12	17	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197881490	C	C	197881490	1	2	133	0	1	0	0	0	0	0	0	0	8849	1334	46	4		4	LHX9	1	197881490	5'Flank	SNP	G	TCGA-49-4487-01A-21D-1855-08	808233	197881490	51369131	89	118999											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200819110	200819110	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgagtcaacagtctctgaAgtcctatcactgcctgtcac	7	12	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200819110	G	G	200819110	2	3	133	1	0	0	0	0	0	0	0	1	2638	69	3	5		5	CAMSAP1L1	1	200819110	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	2937620	200819110	48431511	90	119000											
IGFN1	91156	broad.mit.edu	37	chr1	201182572	201182572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctatgggagagaactggGggtgcctggaggagatgctg	19	6	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201182572	T	T	201182572	3	4	133	1	0	0	0	0	1	0	0	0	7660	1232	43	2	8593	2	IGFN1	1	201182572	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	363462	201182572	48068049	91	119001											
NAV1	89796	broad.mit.edu	37	chr1	201757598	201757598	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccctctgtccttccagtgAgtcccactgcggccaccacg	8	18	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201757598	C	C	201757598	3	2	133	1	0	0	0	0	1	0	0	0	10277	304	11	5	3093	5	NAV1	1	201757598	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	575026	201757598	47493023	92	119002											
CAMK1G	57172	broad.mit.edu	37	chr1	209779580	209779580	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcaggagcccagggctcatCttcctgtgaaattttgtatc	10	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209779580	A	A	209779580	1	1	133	0	1	0	0	0	0	0	0	0	2624	928	32	3		3	CAMK1G	1	209779580	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	8021982	209779580	39471041	93	119003											
KCNK2	3776	broad.mit.edu	37	chr1	215342594	215342594	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcaaaatattctgtatcatCtatgccttactgggaattcc	7	9	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215342594	G	G	215342594	3	3	133	1	0	0	0	0	1	0	0	0	8136	903	32	4	585	4	KCNK2	1	215342594	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5563014	215342594	33908027	94	119004											
TGFB2	7042	broad.mit.edu	37	chr1	218614594	218614594	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaagcatctgcttctcctTgctgcgtgtcccaagattta	8	12	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218614594	A	A	218614594	3	1	133	1	0	0	0	0	1	0	0	0	15941	1812	63	5	1249	5	TGFB2	1	218614594	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	3272000	218614594	30636027	95	119005											
IARS2	55699	broad.mit.edu	37	chr1	220287811	220287811	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaaggatgaatacttgatCaacaggtagaatgctttcta	8	7	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220287811	G	G	220287811	3	3	133	1	0	0	0	0	1	0	0	0	7544	816	29	4	1681	4	IARS2	1	220287811	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1673217	220287811	28962810	96	119006											
DUSP10	11221	broad.mit.edu	37	chr1	221912759	221912759	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggttagcagggcaggtggTagaggttccgatggcagtgg	19	6	0	1	rs148718278		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221912759	A	A	221912759	3	1	133	1	0	0	0	0	1	0	0	0	4850	1638	57	5	1132	5	DUSP10	1	221912759	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	1624948	221912759	27337862	97	119007											
DISP1	84976	broad.mit.edu	37	chr1	223178675	223178676	+	Missense_Mutation	DNP	GG	TT	TT													gtccagatccaaaacggcgtGgcacctctgaaggccacaca							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	223178676	TT	TT	223178675	3	4	133	1	0	0	0	0	1	0	0	0	4579	1335	47	2	3962	2	DISP1	1	223178675	Missense_Mutation	DNP	GG	TCGA-49-4487-01A-21D-1855-08	1265916	223178675	26071946	98	119008											
LEFTY1	10637	broad.mit.edu	37	chr1	226075392	226075392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcggggactgggacgggCcccgaggaccccgcaccgcc	18	16	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226075392	A	A	226075392	1	1	133	0	1	0	0	0	0	0	0	0	8787	754	26	3		3	LEFTY1	1	226075392	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2896717	226075392	23175229	99	119009											
CABC1	56997	broad.mit.edu	37	chr1	227153532	227153532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacccagcaatatcccgGggagggcgttgggggagcag	20	9	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227153532	T	T	227153532	1	4	133	0	1	0	0	0	0	0	0	0	2553	1247	43	2		2	CABC1	1	227153532	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1078140	227153532	22097089	100	119010											
CDC42BPA	8476	broad.mit.edu	37	chr1	227257519	227257519	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggcgtattcaaaaatgCcaagaaagaatgctgtgagt	12	5	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227257519	G	G	227257519	3	3	133	1	0	0	0	0	1	0	0	0	3102	739	26	4	2360	4	CDC42BPA	1	227257519	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	103987	227257519	21993102	101	119011											
MRPL55	128308	broad.mit.edu	37	chr1	228294558	228294558	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcgactggagctgagccTcacgcttccgcagcctggcc	11	17	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228294558	C	C	228294558	3	2	133	1	0	0	0	0	1	0	0	0	9913	1551	54	5	100	5	MRPL55	1	228294558	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	1037039	228294558	20956063	102	119012											
OBSCN	84033	broad.mit.edu	37	chr1	228479799	228479799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgtggcctggccatggcgGacgccggggagtacttgtgt	17	10	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228479799	T	T	228479799	3	4	133	1	0	0	0	0	1	0	0	0	10907	1174	41	3	10690	3	OBSCN	1	228479799	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	185241	228479799	20770822	103	119013											
TRIM11	81559	broad.mit.edu	37	chr1	228589780	228589780	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctgcctgccacaagacgCaggtctcatccgcctgggct	10	17	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228589780	T	T	228589780	3	4	133	1	0	0	0	0	1	0	0	0	16611	710	25	4	935	4	TRIM11	1	228589780	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	109981	228589780	20660841	104	119014											
URB2	9816	broad.mit.edu	37	chr1	229771836	229771836	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagcctgtgctggcctcGggcccctccacggtactctc	12	17	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229771836	T	T	229771836	2	4	133	1	0	0	0	0	0	0	0	1	17151	1103	39	1		1	URB2	1	229771836	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	1182056	229771836	19478785	105	119015											
SIPA1L2	57568	broad.mit.edu	37	chr1	232564324	232564324	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacatcctgttgaaaacaaTcagaatggaaattaagccta	6	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232564324	A	A	232564324	1	1	133	0	1	0	0	0	0	0	0	0	14443	1450	50	5		5	SIPA1L2	1	232564324	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	2792488	232564324	16686297	106	119016											
PCNXL2	80003	broad.mit.edu	37	chr1	233225832	233225832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttctcccagaatttcaCtggcctgacatatgatgtga	8	9	2	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233225832	A	A	233225832	3	1	133	1	0	0	0	0	1	0	0	0	11686	565	20	3	2410	3	PCNXL2	1	233225832	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	661508	233225832	16024789	107	119017											
NID1	4811	broad.mit.edu	37	chr1	236189475	236189475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatggaggggacaaggcaGggagacagagggaagatggt	21	3	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236189475	T	T	236189475	1	4	133	0	1	0	0	0	0	0	0	0	10509	1015	35	2		2	NID1	1	236189475	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2963643	236189475	13061146	108	119018											
RYR2	6262	broad.mit.edu	37	chr1	237813134	237813134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctttgaagattatctaCtgccaaacacaaatggcctt	5	11	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237813134	A	A	237813134	1	1	133	0	1	0	0	0	0	0	0	0	13880	580	20	3		3	RYR2	1	237813134	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1623659	237813134	11437487	109	119019											
RYR2	6262	broad.mit.edu	37	chr1	237872184	237872184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcctataataaataaaGtgaaacctcagctcttgaaa	5	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237872184	T	T	237872184	3	4	133	1	0	0	0	0	1	0	0	0	13880	1029	36	3	10202	3	RYR2	1	237872184	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	59050	237872184	11378437	110	119020											
FMN2	56776	broad.mit.edu	37	chr1	240307799	240307799	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcctagcatgaatgccatCtgtttctgtactaccacatc	6	13	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240307799	T	T	240307799	1	4	133	0	1	0	0	0	0	0	0	0	6008	928	32	4		4	FMN2	1	240307799	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2435615	240307799	8942822	111	119021											
EXO1	9156	broad.mit.edu	37	chr1	242042435	242042435	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcacagcattgcagcagttCcgaagaaagagcgattcccc	10	12	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242042435	T	T	242042435	2	4	133	1	0	0	0	0	0	0	0	1	5342	854	30	4		4	EXO1	1	242042435	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1734636	242042435	7208186	112	119022											
PPPDE1	51029	broad.mit.edu	37	chr1	244849997	244849997	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtacacacagtctaaatatActctctgaagattttgtact	5	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	244849997	C	C	244849997	1	2	133	0	1	0	0	0	0	0	0	0	12509	406	14	5		5	PPPDE1	1	244849997	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	2807562	244849997	4400624	113	119023											
OR1C1	26188	broad.mit.edu	37	chr1	247920769	247920769	+	Frame_Shift_Del	DEL	G	-	-													cagtcactgaggtcattattGctgctgaaagactgtgcact							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247920769	-	-	247920769	7	5	133	1	0	1	0	1	0	0	0	0	11046	1328	46	0	6	0	OR1C1	1	247920769	Frame_Shift_Del	DEL	G	TCGA-49-4487-01A-21D-1855-08	3070772	247920769	1329852	114	119024											
OR2T33	391195	broad.mit.edu	37	chr1	248436663	248436663	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcctgcaggagcccgtcagCtgcacccaggagccaacacg	12	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248436663	G	G	248436663	3	3	133	1	0	0	0	0	1	0	0	0	11118	797	28	4	511	4	OR2T33	1	248436663	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	515894	248436663	813958	115	119025											
OR2T4	127074	broad.mit.edu	37	chr1	248525228	248525228	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgcccaagatgctcctgGaccaggtcatgggtgtgaat	13	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248525228	T	T	248525228	3	4	133	1	0	0	0	0	1	0	0	0	11121	1174	41	3	348	3	OR2T4	1	248525228	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	88565	248525228	725393	116	119026											
KIDINS220	57498	broad.mit.edu	37	chr2	8919884	8919884	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccagccttgtctgattctGagtgaagctgtcaatggttt	10	9	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8919884	A	A	8919884	4	1	133	1	0	0	0	0	0	1	0	0	8341	1299	45	4	3077	4	KIDINS220	2	8919884	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08		8919884	234279489	117	119027											
NTSR2	23620	broad.mit.edu	37	chr2	11802031	11802031	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcacccggccagggattGgtggaggcagccctggaact	16	11	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11802031	A	A	11802031	1	1	133	0	1	0	0	0	0	0	0	0	10806	1363	47	4		4	NTSR2	2	11802031	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2882147	11802031	231397342	118	119028											
C2orf39	92749	broad.mit.edu	37	chr2	26663341	26663341	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgaagaagagagatgaAgaaagcacagtaattaaatc	11	4	0	6			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26663341	G	G	26663341	2	3	133	1	0	0	0	0	0	0	0	1	2186	69	3	5		5	C2orf39	2	26663341	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	14861310	26663341	216536032	119	119029											
FAM179A	165186	broad.mit.edu	37	chr2	29222107	29222107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccgtcacagctcctgcGtggactcggacagctgggtg	15	12	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29222107	T	T	29222107	3	4	133	1	0	0	0	0	1	0	0	0	5550	1145	40	3	210	3	FAM179A	2	29222107	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2558766	29222107	213977266	120	119030											
RASGRP3	25780	broad.mit.edu	37	chr2	33783856	33783856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgaggctacagagggCcaccaccagccaggccaccc	11	17	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33783856	A	A	33783856	3	1	133	1	0	0	0	0	1	0	0	0	13184	739	26	3	1881	3	RASGRP3	2	33783856	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	4561749	33783856	209415517	121	119031											
FAM98A	25940	broad.mit.edu	37	chr2	33820696	33820696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatcttccaacaatgggCccttgtaactggtgagcaag	9	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33820696	A	A	33820696	3	1	133	1	0	0	0	0	1	0	0	0	5713	739	26	3	1522	3	FAM98A	2	33820696	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	36840	33820696	209378677	122	119032											
VIT	5212	broad.mit.edu	37	chr2	37036074	37036074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agttaatgatcctcatcaccGacgggaggtcctacgacgac	10	12	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37036074	T	T	37036074	3	4	133	1	0	0	0	0	1	0	0	0	17298	1058	37	3	2028	3	VIT	2	37036074	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3215378	37036074	206163299	123	119033											
ATL2	64225	broad.mit.edu	37	chr2	38536571	38536571	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactttagatccacttatctCtttttctaccaaattttcag	3	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38536571	G	G	38536571	3	3	133	1	0	0	0	0	1	0	0	0	1111	922	32	4	862	4	ATL2	2	38536571	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1500497	38536571	204662802	124	119034											
THADA	63892	broad.mit.edu	37	chr2	43819156	43819156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatgtaacagcaaagaagCtagatttttcccttccacat	5	10	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43819156	A	A	43819156	3	1	133	1	0	0	0	0	1	0	0	0	15963	797	28	3	5899	3	THADA	2	43819156	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5282585	43819156	199380217	125	119035											
ABCG5	64240	broad.mit.edu	37	chr2	44065079	44065079	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatgtgatgtcccaccaGggcctcacgcggtggcttta	12	12	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44065079	T	T	44065079	2	4	133	1	0	0	0	0	0	0	0	1	71	987	35	2		2	ABCG5	2	44065079	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	245923	44065079	199134294	126	119036											
ABCG5	64240	broad.mit.edu	37	chr2	44065837	44065837	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggccaacaggcagcaaagCtgggcaaattttctggtggc	13	9	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44065837	A	A	44065837	1	1	133	0	1	0	0	0	0	0	0	0	71	812	28	3		3	ABCG5	2	44065837	5'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	758	44065837	199133536	127	119037											
ANTXR1	84168	broad.mit.edu	37	chr2	69271872	69271872	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagagcttcttttcctttccAgcccacagttgagaatgtcc	7	12	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69271872	T	T	69271872	5	4	133	1	0	0	0	0	0	0	1	0	711	202	7	5	233	5	ANTXR1	2	69271872	Splice_Site	SNP	A	TCGA-49-4487-01A-21D-1855-08	25206035	69271872	173927501	128	119038											
MXD1	4084	broad.mit.edu	37	chr2	70162611	70162611	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cataaaggtaagtgtattgtTgggatgctgctttatcttta	10	4	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70162611	G	G	70162611	1	3	133	0	1	0	0	0	0	0	0	0	10093	1827	63	5		5	MXD1	2	70162611	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	890739	70162611	173036762	129	119039											
SNRPG	6637	broad.mit.edu	37	chr2	70520730	70520730	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataactgaccacttcggttTggctctcacacatacttact	5	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70520730	G	G	70520730	1	3	133	0	1	0	0	0	0	0	0	0	14983	1827	63	5		5	SNRPG	2	70520730	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	358119	70520730	172678643	130	119040											
ADD2	119	broad.mit.edu	37	chr2	70919661	70919661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgcccttctccaccacCtctcccagaatgttcacctt	4	19	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70919661	A	A	70919661	3	1	133	1	0	0	0	0	1	0	0	0	305	680	24	2	1818	2	ADD2	2	70919661	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	398931	70919661	172279712	131	119041											
ATP6V1B1	525	broad.mit.edu	37	chr2	71187162	71187162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaacagcattgcccgcgGccagaagatccccatcttct	8	15	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71187162	T	T	71187162	3	4	133	1	0	0	0	0	1	0	0	0	1182	1203	42	3	561	3	ATP6V1B1	2	71187162	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	267501	71187162	172012211	132	119042											
FBXO41	150726	broad.mit.edu	37	chr2	73490964	73490964	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcttccaggcagcccctgggGatgaccaagaggtcagagag	15	11	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73490964	A	A	73490964	1	1	133	0	1	0	0	0	0	0	0	0	5807	1189	41	4		4	FBXO41	2	73490964	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2303802	73490964	169708409	133	119043											
STAMBP	10617	broad.mit.edu	37	chr2	74076333	74076333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagacactttacagccCtttttttggtgccattagaa	9	8	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74076333	A	A	74076333	1	1	133	0	1	0	0	0	0	0	0	0	15368	696	24	2		2	STAMBP	2	74076333	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	585369	74076333	169123040	134	119044											
TACR1	6869	broad.mit.edu	37	chr2	75425737	75425737	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggcgatgggaaagaagttGtggaacttgcagtagaacag	16	5	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75425737	C	C	75425737	3	2	133	1	0	0	0	0	1	0	0	0	15624	1368	48	4	923	4	TACR1	2	75425737	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1349404	75425737	167773636	135	119045											
TRIM43	129868	broad.mit.edu	37	chr2	96259801	96259801	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacttctcacatgccttccaGaaggaactcacctgcgtcat	7	14	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96259801	C	C	96259801	3	2	133	1	0	0	0	0	1	0	0	0	16642	933	33	4	32	4	TRIM43	2	96259801	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	20834064	96259801	146939572	136	119046											
CNGA3	1261	broad.mit.edu	37	chr2	98996631	98996631	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctcagtgcttgtgtcacCttccaggctgtcgcgcctca	11	14	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98996631	T	T	98996631	1	4	133	0	1	0	0	0	0	0	0	0	3630	696	24	4		4	CNGA3	2	98996631	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2736830	98996631	144202742	137	119047											
SULT1C3	442038	broad.mit.edu	37	chr2	108875201	108875201	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttccagttgttggcgggTcctggtttgaccatgtgaaa	12	8	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108875201	A	A	108875201	3	1	133	1	0	0	0	0	1	0	0	0	15496	1667	58	5	556	5	SULT1C3	2	108875201	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	9878570	108875201	134324172	138	119048											
RANBP2	5903	broad.mit.edu	37	chr2	109381205	109381205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaaccagcccagagaatGttcaagatcgatttgcattg	8	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109381205	T	T	109381205	3	4	133	1	0	0	0	0	1	0	0	0	13136	1377	48	3	4288	3	RANBP2	2	109381205	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	506004	109381205	133818168	139	119049											
BCL2L11	10018	broad.mit.edu	37	chr2	111881467	111881467	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaatcctgaaggcaatcacGgaggtgaaggggacagctgc	15	8	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111881467	C	C	111881467	3	2	133	1	0	0	0	0	1	0	0	0	1374	1117	39	4	147	4	BCL2L11	2	111881467	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2500262	111881467	131317906	140	119050											
IL1A	3552	broad.mit.edu	37	chr2	113539432	113539432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaacagaagctgagaGgctgttcatggtcagggaat	14	5	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113539432	T	T	113539432	1	4	133	0	1	0	0	0	0	0	0	0	7720	1015	35	2		2	IL1A	2	113539432	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1657965	113539432	129659941	141	119051											
DPP10	57628	broad.mit.edu	37	chr2	116497264	116497264	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacagatgtttgtgggtcActgagcccacatctctacag	11	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116497264	T	T	116497264	1	4	133	0	1	0	0	0	0	0	0	0	4767	174	6	5		5	DPP10	2	116497264	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	2957832	116497264	126702109	142	119052											
DPP10	57628	broad.mit.edu	37	chr2	116497481	116497481	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcctaaggtaagtaacatGgaagtactattttgttcctt	7	6	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116497481	C	C	116497481	1	2	133	0	1	0	0	0	0	0	0	0	4767	1363	47	4		4	DPP10	2	116497481	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	217	116497481	126701892	143	119053											
DPP10	57628	broad.mit.edu	37	chr2	116535446	116535446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatctccttacacagattgGcttctcaatggctatctatg	8	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116535446	T	T	116535446	1	4	133	0	1	0	0	0	0	0	0	0	4767	1218	42	3		3	DPP10	2	116535446	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	37965	116535446	126663927	144	119054											
CCDC93	54520	broad.mit.edu	37	chr2	118753763	118753763	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggggagcctgagcttactCtgctccttgctagagagtct	12	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118753763	A	A	118753763	1	1	133	0	1	0	0	0	0	0	0	0	2900	928	32	3		3	CCDC93	2	118753763	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2218317	118753763	124445610	145	119055											
TFCP2L1	29842	broad.mit.edu	37	chr2	121989684	121989693	+	Intron	DEL	TTTTGTTTTG	-	-													caggaccacactgccactctTtttgttttgttttgttttgt					rs3835787		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121989693	-	-	121989684	6	5	133	0	1	1	0	1	0	0	0	0	15919	1856	64	0		0	TFCP2L1	2	121989684	Intron	DEL	TTTTGTTTTG	TCGA-49-4487-01A-21D-1855-08	3235921	121989684	121209689	146	119056											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671579	125671579	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttgctttctctcctAcgcattcccctcatctggag	6	13	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125671579	G	G	125671579	1	3	133	0	1	0	0	0	0	0	0	0	3682	406	14	5		5	CNTNAP5	2	125671579	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	3681895	125671579	117527794	147	119057											
CCDC74B	91409	broad.mit.edu	37	chr2	130898051	130898051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaatgtggggaagagggcCtggttcccctctcccactga	13	13	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130898051	A	A	130898051	1	1	133	0	1	0	0	0	0	0	0	0	2876	696	24	2		2	CCDC74B	2	130898051	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	5226472	130898051	112301322	148	119058											
CCDC74A	90557	broad.mit.edu	37	chr2	132289308	132289308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtctcccagaaggcggacCtggaagaggagcccctactt	12	13	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132289308	A	A	132289308	3	1	133	1	0	0	0	0	1	0	0	0	2875	680	24	2	630	2	CCDC74A	2	132289308	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1391257	132289308	110910065	149	119059											
LRP1B	53353	broad.mit.edu	37	chr2	141291575	141291575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaatattctgagattgatGgaacaagtatttacctttac	6	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291575	T	T	141291575	1	4	133	0	1	0	0	0	0	0	0	0	9042	1363	47	2		2	LRP1B	2	141291575	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	9002267	141291575	101907798	150	119060											
LRP1B	53353	broad.mit.edu	37	chr2	141299393	141299393	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgattcccattggctgatGtggaatatcggaacgaagaa	11	6	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141299393	C	C	141299393	3	2	133	1	0	0	0	0	1	0	0	0	9042	1377	48	4	6649	4	LRP1B	2	141299393	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	7818	141299393	101899980	151	119061											
ZEB2	9839	broad.mit.edu	37	chr2	145157401	145157401	+	Frame_Shift_Del	DEL	G	-	-													cttaaattactattcatggtGggaaacccaagtaaaggggc							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145157401	-	-	145157401	7	5	133	1	0	1	0	1	0	0	0	0	17750	1335	47	0	2303	0	ZEB2	2	145157401	Frame_Shift_Del	DEL	G	TCGA-49-4487-01A-21D-1855-08	3858008	145157401	98041972	152	119062											
ZEB2	9839	broad.mit.edu	37	chr2	145187455	145187455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcttggctcacgtgtgggGaggactcatggttgggcaca	17	8	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145187455	T	T	145187455	3	4	133	1	0	0	0	0	1	0	0	0	17750	1174	41	3	3464	3	ZEB2	2	145187455	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	30054	145187455	98011918	153	119063											
LY75	4065	broad.mit.edu	37	chr2	160732242	160732242	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactctttacttcagccaagTtggggagagagaataaaaaa	9	6	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160732242	A	A	160732242	1	1	133	0	1	0	0	0	0	0	0	0	9187	1740	60	5		5	LY75	2	160732242	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	15544787	160732242	82467131	154	119064											
GCG	2641	broad.mit.edu	37	chr2	163004007	163004007	+	Missense_Mutation	SNP	T	G	G													gatcactgagtgggtctgccTgggaagctgagaatgatctg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163004007	G	G	163004007	3	3	133	1	0	0	0	0	1	0	0	0	6352	1580	55	5	448	5	GCG	2	163004007	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	2271765	163004007	80195366	155	119065	517	2									
GCG	2641	broad.mit.edu	37	chr2	163004009	163004009	+	Silent	SNP	G	C	C													tcactgagtgggtctgcctgGgaagctgagaatgatctgtg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163004009	C	C	163004009	2	2	133	1	0	0	0	0	0	0	0	1	6352	1219	43	4		4	GCG	2	163004009	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2	163004009	80195364	156	119066	517	2									
SCN2A	6326	broad.mit.edu	37	chr2	166245393	166245393	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagggaagttgggatcgatGacatgttcaactttgagacc	13	6	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166245393	T	T	166245393	3	4	133	1	0	0	0	0	1	0	0	0	14029	1290	45	3	5275	3	SCN2A	2	166245393	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3241384	166245393	76953980	157	119067											
SCN1A	6323	broad.mit.edu	37	chr2	166908495	166908495	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctcccacaatggttttcAggcctgaaagaaagaagtct	11	9	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166908495	G	G	166908495	3	3	133	1	0	0	0	0	1	0	0	0	14027	188	7	5	5415	5	SCN1A	2	166908495	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	663102	166908495	76290878	158	119068											
XIRP2	129446	broad.mit.edu	37	chr2	168098537	168098537	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaaaaaattctgaactGgcatttattcagttctgtaa	5	6	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168098537	T	T	168098537	1	4	133	0	1	0	0	0	0	0	0	0	17557	1363	47	2		2	XIRP2	2	168098537	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1190042	168098537	75100836	159	119069											
HOXD10	3236	broad.mit.edu	37	chr2	176981700	176981700	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagacatggggacctatGgaatgcaaacctgtggactg	14	9	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176981700	T	T	176981700	4	4	133	1	0	0	0	0	0	1	0	0	7386	1349	47	2	141	2	HOXD10	2	176981700	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	8883163	176981700	66217673	160	119070											
TTN	7273	broad.mit.edu	37	chr2	179412935	179412935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgatccggctgcctccatCgtggtcaggtttaagccaag	12	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179412935	A	A	179412935	3	1	133	1	0	0	0	0	1	0	0	0	16861	884	31	3	14657	3	TTN	2	179412935	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2431235	179412935	63786438	161	119071											
CCDC141	285025	broad.mit.edu	37	chr2	179720986	179720986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatactttcttgttacctGcattttttcagcatacatat	3	10	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179720986	T	T	179720986	3	4	133	1	0	0	0	0	1	0	0	0	2801	1328	46	3	1513	3	CCDC141	2	179720986	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	308051	179720986	63478387	162	119072											
GULP1	51454	broad.mit.edu	37	chr2	189452679	189452679	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaattagatgagatgcaggtGactattttgatagactggcc	11	5	0	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189452679	A	A	189452679	1	1	133	0	1	0	0	0	0	0	0	0	6966	1305	45	4		4	GULP1	2	189452679	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	9731693	189452679	53746694	163	119073											
ASNSD1	54529	broad.mit.edu	37	chr2	190532188	190532188	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcagaaattaagaagaactCgaatatgtcacttaattcgg	8	6	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190532188	A	A	190532188	2	1	133	1	0	0	0	0	0	0	0	1	1053	876	31	3		3	ASNSD1	2	190532188	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1079509	190532188	52667185	164	119074											
SF3B1	23451	broad.mit.edu	37	chr2	198274523	198274523	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgggggtttcatcccatCtgtttttacgagcactggaa	10	8	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198274523	T	T	198274523	3	4	133	1	0	0	0	0	1	0	0	0	14262	913	32	4	3115	4	SF3B1	2	198274523	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	7742335	198274523	44924850	165	119075											
PLCL1	5334	broad.mit.edu	37	chr2	198950220	198950220	+	Frame_Shift_Del	DEL	G	-	-													cttgaatccacaggacttttGgaattgtggctgtcagattg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	198950220	-	-	198950220	7	5	133	1	0	1	0	1	0	0	0	0	12134	1357	47	0	1985	0	PLCL1	2	198950220	Frame_Shift_Del	DEL	G	TCGA-49-4487-01A-21D-1855-08	675697	198950220	44249153	166	119076											
AOX1	316	broad.mit.edu	37	chr2	201473801	201473801	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagaagacacagatgtaCcatgctctcctgaagcattt	10	9	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201473801	A	A	201473801	4	1	133	1	0	0	0	0	0	1	0	0	731	518	18	3	1044	3	AOX1	2	201473801	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2523581	201473801	41725572	167	119077											
TRAK2	66008	broad.mit.edu	37	chr2	202264117	202264117	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttgatcaaaggcttgtcCcaattgctcctccagggatt	8	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202264117	T	T	202264117	3	4	133	1	0	0	0	0	1	0	0	0	16574	632	22	4	2329	4	TRAK2	2	202264117	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	790316	202264117	40935256	168	119078											
RAPH1	65059	broad.mit.edu	37	chr2	204305195	204305195	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagggactgggatggagctGggctgccacttgggctttgc	18	8	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204305195	A	A	204305195	2	1	133	1	0	0	0	0	0	0	0	1	13158	1335	47	4		4	RAPH1	2	204305195	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2041078	204305195	38894178	169	119079											
NDUFS1	4719	broad.mit.edu	37	chr2	206994878	206994878	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacctccatctgctcccaGgagaaacagcaccttgggag	9	14	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206994878	A	A	206994878	2	1	133	1	0	0	0	0	0	0	0	1	10386	991	35	4		4	NDUFS1	2	206994878	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2689683	206994878	36204495	170	119080											
ZDBF2	57683	broad.mit.edu	37	chr2	207169854	207169854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctaacgatagaccagttaCagctaatacaactagtttac	5	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207169854	A	A	207169854	3	1	133	1	0	0	0	0	1	0	0	0	17725	478	17	3	612	3	ZDBF2	2	207169854	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	174976	207169854	36029519	171	119081											
ADAM23	8745	broad.mit.edu	37	chr2	207435496	207435496	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acggaatgtggaaatggataCgtggaagctggggaggagtg	19	3	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207435496	G	G	207435496	4	3	133	1	0	0	0	0	0	1	0	0	245	547	19	4	1589	4	ADAM23	2	207435496	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	265642	207435496	35763877	172	119082											
CRYGB	1419	broad.mit.edu	37	chr2	209010452	209010452	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaatatcatgaaatagCttttatttccaaaaagatgg	6	4	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209010452	T	T	209010452	1	4	133	0	1	0	0	0	0	0	0	0	3947	812	28	4		4	CRYGB	2	209010452	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1574956	209010452	34188921	173	119083											
USP37	57695	broad.mit.edu	37	chr2	219411562	219411562	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtactctatactttatttctCctcaaattactggtatttct	3	9	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219411562	T	T	219411562	1	4	133	0	1	0	0	0	0	0	0	0	17195	870	30	4		4	USP37	2	219411562	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	10401110	219411562	23787811	174	119084											
PRKAG3	53632	broad.mit.edu	37	chr2	219689207	219689207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccacagaggccccccacCcatccccacacccttagcct	6	22	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219689207	A	A	219689207	1	1	133	0	1	0	0	0	0	0	0	0	12608	638	22	2		2	PRKAG3	2	219689207	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	277645	219689207	23510166	175	119085											
GLB1L	79411	broad.mit.edu	37	chr2	220107620	220107620	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaccccaggctgtggctcgTggtagttccagggcacataa	13	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220107620	A	A	220107620	3	1	133	1	0	0	0	0	1	0	0	0	6492	1696	59	5	1760	5	GLB1L	2	220107620	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	418413	220107620	23091753	176	119086											
GMPPA	29926	broad.mit.edu	37	chr2	220366738	220366738	+	Frame_Shift_Del	DEL	T	-	-													caccgacgccagcgtcacccTttcttactccttggcactac							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220366738	-	-	220366738	7	5	133	1	0	1	0	1	0	0	0	0	6558	1596	56	0	422	0	GMPPA	2	220366738	Frame_Shift_Del	DEL	T	TCGA-49-4487-01A-21D-1855-08	259118	220366738	22832635	177	119087											
RHBDD1	84236	broad.mit.edu	37	chr2	227773518	227773518	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatggctgccattaaaatgTttatttcttttacgtttagg	7	5	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227773518	C	C	227773518	1	2	133	0	1	0	0	0	0	0	0	0	13425	1740	60	5		5	RHBDD1	2	227773518	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	7406780	227773518	15425855	178	119088											
ECEL1	9427	broad.mit.edu	37	chr2	233347707	233347707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcggcaggccagggcagGgctacctgcagactgggcaa	16	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233347707	T	T	233347707	1	4	133	0	1	0	0	0	0	0	0	0	4931	1247	43	2		2	ECEL1	2	233347707	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	5574189	233347707	9851666	179	119089											
INPP5D	3635	broad.mit.edu	37	chr2	234072310	234072310	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctcctaatgctttgactcGatgtgcctttgactcacttg	7	11	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234072310	T	T	234072310	1	4	133	0	1	0	0	0	0	0	0	0	7826	1073	37	3		3	INPP5D	2	234072310	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	724603	234072310	9127063	180	119090											
TRPM8	79054	broad.mit.edu	37	chr2	234894455	234894455	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccatccccctggtgtgcaTctacatgttatccaccaaca	5	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234894455	G	G	234894455	3	3	133	1	0	0	0	0	1	0	0	0	16717	1435	50	5	2963	5	TRPM8	2	234894455	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	822145	234894455	8304918	181	119091											
COL6A3	1293	broad.mit.edu	37	chr2	238245036	238245036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggctggcttcacagatgGctgatttataatagtcacag	11	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238245036	T	T	238245036	3	4	133	1	0	0	0	0	1	0	0	0	3733	1203	42	3	846	3	COL6A3	2	238245036	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3350581	238245036	4954337	182	119092											
FANCD2	2177	broad.mit.edu	37	chr3	10106096	10106096	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgccttcgtagtggactcCtgtgttgttccggaagggta	14	8	0	0	rs138189144	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10106096	T	T	10106096	2	4	133	1	0	0	0	0	0	0	0	1	5722	668	24	4		4	FANCD2	3	10106096	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08		10106096	187916334	183	119093											
SLC6A6	6533	broad.mit.edu	37	chr3	14489072	14489072	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcagatgtttactcatctCatttgcccaacctgcaggta	6	13	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14489072	T	T	14489072	1	4	133	0	1	0	0	0	0	0	0	0	14802	841	29	4		4	SLC6A6	3	14489072	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4382976	14489072	183533358	184	119094											
BTD	686	broad.mit.edu	37	chr3	15677058	15677058	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatcacgaggctgaatatTatgtggctgccgtgtatgag	12	8	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15677058	A	A	15677058	3	1	133	1	0	0	0	0	1	0	0	0	1560	1754	61	5	178	5	BTD	3	15677058	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	1187986	15677058	182345372	185	119095											
RARB	5915	broad.mit.edu	37	chr3	25611292	25611292	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaggagacttcgaaGcaagaatgcacagagagcta	11	6	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25611292	A	A	25611292	2	1	133	1	0	0	0	0	0	0	0	1	13161	962	34	4		4	RARB	3	25611292	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	9934234	25611292	172411138	186	119096											
NEK10	152110	broad.mit.edu	37	chr3	27204002	27204002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaaggctatgggactgcCaccctgtcactaactcagcc	10	14	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27204002	A	A	27204002	3	1	133	1	0	0	0	0	1	0	0	0	10417	609	21	2		2	NEK10	3	27204002	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1592710	27204002	170818428	187	119097											
MYD88	4615	broad.mit.edu	37	chr3	38182678	38182678	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggcaatgaagaaagagttCcccagcatcctgaggttcat	10	9	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38182678	T	T	38182678	2	4	133	1	0	0	0	0	0	0	0	1	10117	854	30	4		4	MYD88	3	38182678	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	10978676	38182678	159839752	188	119098											
SCN5A	6331	broad.mit.edu	37	chr3	38648368	38648368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccttgagacccttgctgGgctggacttgtctccctggg	13	13	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38648368	T	T	38648368	1	4	133	0	1	0	0	0	0	0	0	0	14035	1247	43	2		2	SCN5A	3	38648368	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	465690	38648368	159374062	189	119099											
CCR8	1237	broad.mit.edu	37	chr3	39374724	39374724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaccctgttatctatgCttttgttggggagaagttca	11	6	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39374724	A	A	39374724	3	1	133	1	0	0	0	0	1	0	0	0	2977	797	28	3	904	3	CCR8	3	39374724	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	726356	39374724	158647706	190	119100											
FYCO1	79443	broad.mit.edu	37	chr3	46009082	46009082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttcccccaggcctcttGcagactggagttcacaggga	12	13	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46009082	T	T	46009082	3	4	133	1	0	0	0	0	1	0	0	0	6185	1328	46	3	2736	3	FYCO1	3	46009082	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	6634358	46009082	152013348	191	119101											
MYL3	4634	broad.mit.edu	37	chr3	46899711	46899711	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcgggttcaggagggagtGggtgcctacctgggcacgag	19	9	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46899711	C	C	46899711	1	2	133	0	1	0	0	0	0	0	0	0	10142	1363	47	4		4	MYL3	3	46899711	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	890629	46899711	151122719	192	119102											
SETD2	29072	broad.mit.edu	37	chr3	47162939	47162939	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagactggagacggtttcTtggaatactgctatcatccg	10	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47162939	A	A	47162939	4	1	133	1	0	0	0	0	0	1	0	0	14244	1617	56	5	4583	5	SETD2	3	47162939	Nonsense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	263228	47162939	150859491	193	119103											
COL7A1	1294	broad.mit.edu	37	chr3	48619722	48619722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcactgctcaagggctgtGctgtgctcagagcgccatcc	13	13	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48619722	T	T	48619722	1	4	133	0	1	0	0	0	0	0	0	0	3736	1334	46	3		3	COL7A1	3	48619722	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1456783	48619722	149402708	194	119104											
CELSR3	1951	broad.mit.edu	37	chr3	48680562	48680562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcggcagggatcaatcaGggaccagtataagtcactgt	13	8	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48680562	T	T	48680562	1	4	133	0	1	0	0	0	0	0	0	0	3253	1015	35	2		2	CELSR3	3	48680562	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	60840	48680562	149341868	195	119105											
BSN	8927	broad.mit.edu	37	chr3	49700582	49700582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggtgaggagccgggacGgcgtgctgccaaaccacacg	15	13	0	1	rs140013456	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49700582	T	T	49700582	3	4	133	1	0	0	0	0	1	0	0	0	1539	1116	39	1	11017	1	BSN	3	49700582	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1020020	49700582	148321848	196	119106											
TRAIP	10293	broad.mit.edu	37	chr3	49866942	49866942	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcgaagcctgtccttacCtagggtggaaggaagagatg	13	9	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49866942	A	A	49866942	5	1	133	1	0	0	0	0	0	0	1	0	16572	695	24	2	181	2	TRAIP	3	49866942	Splice_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	166360	49866942	148155488	197	119107											
GNAT1	2779	broad.mit.edu	37	chr3	50232090	50232090	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttcccggactacgatggtGagaagtccgcaaggccgcca	13	12	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50232090	A	A	50232090	1	1	133	0	1	0	0	0	0	0	0	0	6575	1305	45	4		4	GNAT1	3	50232090	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	365148	50232090	147790340	198	119108											
TLR9	54106	broad.mit.edu	37	chr3	52257634	52257634	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctcaggcgccagtttgAcgatgcggttgtaggacaac	14	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52257634	G	G	52257634	3	3	133	1	0	0	0	0	1	0	0	0	16081	275	10	5	2404	5	TLR9	3	52257634	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	2025544	52257634	145764796	199	119109											
ITIH3	3699	broad.mit.edu	37	chr3	52836352	52836352	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgtgcgaacttcagggCttctatgaggaggtggccaa	14	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52836352	T	T	52836352	2	4	133	1	0	0	0	0	0	0	0	1	7975	784	28	4		4	ITIH3	3	52836352	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	578718	52836352	145186078	200	119110											
CADPS	8618	broad.mit.edu	37	chr3	62450996	62450996	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctcccaagccgaaacCaaaaattaaaacaaaagcca	3	14	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62450996	T	T	62450996	1	4	133	0	1	0	0	0	0	0	0	0	2596	609	21	4		4	CADPS	3	62450996	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	9614644	62450996	135571434	201	119111											
FAM19A1	407738	broad.mit.edu	37	chr3	68194544	68194544	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catatacttcaatcatcactGatgattttgcagcctttgtt	5	9	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68194544	C	C	68194544	1	2	133	0	1	0	0	0	0	0	0	0	5578	1305	45	4		4	FAM19A1	3	68194544	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	5743548	68194544	129827886	202	119112											
CNTN3	5067	broad.mit.edu	37	chr3	74350797	74350797	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catctgcctctcctgctttaCctgttgtgacggtttgccaa	8	13	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74350797	G	G	74350797	5	3	133	1	0	0	0	0	0	0	1	0	3674	521	18	4	1176	4	CNTN3	3	74350797	Splice_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	6156253	74350797	123671633	203	119113											
ROBO2	6092	broad.mit.edu	37	chr3	77671594	77671594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgacaggtaacggaacCaatttaataggaaaaactga	9	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77671594	A	A	77671594	1	1	133	0	1	0	0	0	0	0	0	0	13625	609	21	2		2	ROBO2	3	77671594	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3320797	77671594	120350836	204	119114											
ABI3BP	25890	broad.mit.edu	37	chr3	100568829	100568829	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattctgaaatggccaacatGacttctcacattacctgttt	5	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100568829	T	T	100568829	1	4	133	0	1	0	0	0	0	0	0	0	91	1305	45	3		3	ABI3BP	3	100568829	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	22897235	100568829	97453601	205	119115											
NFKBIZ	64332	broad.mit.edu	37	chr3	101574101	101574101	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgcaaggccagagagataGagttggatattagaagtcgg	14	4	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101574101	C	C	101574101	1	2	133	0	1	0	0	0	0	0	0	0	10478	957	33	4		4	NFKBIZ	3	101574101	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1005272	101574101	96448329	206	119116											
ALCAM	214	broad.mit.edu	37	chr3	105268885	105268885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctctatagagcaccacgcCtatcctattacagtcatcat	5	13	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105268885	T	T	105268885	1	4	133	0	1	0	0	0	0	0	0	0	487	696	24	4		4	ALCAM	3	105268885	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3694784	105268885	92753545	207	119117											
DZIP3	9666	broad.mit.edu	37	chr3	108373221	108373221	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtttttcctgtgactctTtaaacagcatcaccctttga	6	11	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108373221	G	G	108373221	1	3	133	0	1	0	0	0	0	0	0	0	4905	1856	64	5		5	DZIP3	3	108373221	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	3104336	108373221	89649209	208	119118											
MORC1	27136	broad.mit.edu	37	chr3	108719519	108719519	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcggcctataacaaggaaTtaacaaaaaaaatacaagga	7	6	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108719519	C	C	108719519	1	2	133	0	1	0	0	0	0	0	0	0	9795	1508	52	5		5	MORC1	3	108719519	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	346298	108719519	89302911	209	119119											
IGSF11	152404	broad.mit.edu	37	chr3	118621429	118621429	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtactgcaccaattcgttCcagtgttgcgtggctgatgg	13	9	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118621429	A	A	118621429	4	1	133	1	0	0	0	0	0	1	0	0	7668	864	30	3	65	3	IGSF11	3	118621429	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	9901910	118621429	79401001	210	119120											
HCLS1	3059	broad.mit.edu	37	chr3	121356146	121356146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagcccacccttaggctcCagcacacagggaagcgctgg	13	14	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121356146	A	A	121356146	1	1	133	0	1	0	0	0	0	0	0	0	7061	609	21	2		2	HCLS1	3	121356146	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2734717	121356146	76666284	211	119121											
PDIA5	10954	broad.mit.edu	37	chr3	122825780	122825781	+	Intron	DNP	GG	TT	TT													gcccaacgaactgagaaatgGgactattccaggatcacttg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	122825781	TT	TT	122825780	1	4	133	0	1	0	0	0	0	0	0	0	11765	1247	43	2		2	PDIA5	3	122825780	Intron	DNP	GG	TCGA-49-4487-01A-21D-1855-08	1469634	122825780	75196650	212	119122											
HEG1	57493	broad.mit.edu	37	chr3	124739887	124739887	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgggccaccatcagtgaacAcggtggcaacatgcattgtc	11	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124739887	T	T	124739887	3	4	133	1	0	0	0	0	1	0	0	0	7111	159	6	5	3200	5	HEG1	3	124739887	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	1914107	124739887	73282543	213	119123											
ALDH1L1	10840	broad.mit.edu	37	chr3	125831601	125831601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccagtgaaccagccgccCgcagaccctggggcaggact	13	16	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125831601	A	A	125831601	1	1	133	0	1	0	0	0	0	0	0	0	494	667	23	1		1	ALDH1L1	3	125831601	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1091714	125831601	72190829	214	119124											
ACPP	55	broad.mit.edu	37	chr3	132086442	132086442	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcaaggcctctttagcaActcctctgaaatttgcaatt	5	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132086442	C	C	132086442	1	2	133	0	1	0	0	0	0	0	0	0	167	58	2	5		5	ACPP	3	132086442	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	6254841	132086442	65935988	215	119125											
DNAJC13	23317	broad.mit.edu	37	chr3	132218620	132218620	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgtgtggctgtcttgactCgtgctagtaaaccaagtgac	12	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132218620	T	T	132218620	3	4	133	1	0	0	0	0	1	0	0	0	4672	884	31	4	4530	4	DNAJC13	3	132218620	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	132178	132218620	65803810	216	119126											
EPHB1	2047	broad.mit.edu	37	chr3	134920438	134920438	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgctaggaacattctGgtcaacagtaacctggtgtg	12	9	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134920438	T	T	134920438	2	4	133	1	0	0	0	0	0	0	0	1	5216	1335	47	2		2	EPHB1	3	134920438	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2701818	134920438	63101992	217	119127											
SR140	23350	broad.mit.edu	37	chr3	142741358	142741358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaatgaagaaatgctgtGccaagaatttggaagatttg	12	3	0	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142741358	T	T	142741358	3	4	133	1	0	0	0	0	1	0	0	0	15249	1319	46	3	914	3	SR140	3	142741358	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	7820920	142741358	55281072	218	119128											
ZIC1	7545	broad.mit.edu	37	chr3	147131311	147131311	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccggccacagtgcgctctcTtccaattttaacgaatggta	9	12	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147131311	A	A	147131311	2	1	133	1	0	0	0	0	0	0	0	1	17804	1596	56	5		5	ZIC1	3	147131311	Silent	SNP	T	TCGA-49-4487-01A-21D-1855-08	4389953	147131311	50891119	219	119129											
CPA3	1359	broad.mit.edu	37	chr3	148596504	148596504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtattaaaattggatctaCtgttgaagataatccactat	6	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148596504	A	A	148596504	3	1	133	1	0	0	0	0	1	0	0	0	3823	565	20	3	461	3	CPA3	3	148596504	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1465193	148596504	49425926	220	119130											
LEKR1	389170	broad.mit.edu	37	chr3	156763046	156763046	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgatttccagttctgttCtcaaattgtattgtccgtaa	6	9	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156763046	T	T	156763046	1	4	133	0	1	0	0	0	0	0	0	0	8789	928	32	4		4	LEKR1	3	156763046	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	8166542	156763046	41259384	221	119131											
VEPH1	79674	broad.mit.edu	37	chr3	156979109	156979109	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtttcttggccacagccttCacactctgtactttgctgag	8	13	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156979109	T	T	156979109	2	4	133	1	0	0	0	0	0	0	0	1	17281	813	29	4		4	VEPH1	3	156979109	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	216063	156979109	41043321	222	119132											
MFSD1	64747	broad.mit.edu	37	chr3	158543761	158543761	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacataggaatcattgagAagaaatacatattttaaggg	8	3	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158543761	G	G	158543761	1	3	133	0	1	0	0	0	0	0	0	0	9620	261	9	5		5	MFSD1	3	158543761	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	1564652	158543761	39478669	223	119133											
SI	6476	broad.mit.edu	37	chr3	164735354	164735354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acataggggatgttagcagcCaccatagcgtcatataattc	9	9	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164735354	A	A	164735354	2	1	133	1	0	0	0	0	0	0	0	1	14410	581	21	2		2	SI	3	164735354	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	6191593	164735354	33287076	224	119134											
PLD1	5337	broad.mit.edu	37	chr3	171395446	171395446	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctggtttccccatgcagctCtcccacacctgtctgtaaac	6	16	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171395446	T	T	171395446	3	4	133	1	0	0	0	0	1	0	0	0	12140	922	32	4	1362	4	PLD1	3	171395446	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	6660092	171395446	26626984	225	119135											
ZNF639	51193	broad.mit.edu	37	chr3	179051750	179051750	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgatccagaagacttgcAtagccatgtggtaaatgagc	10	7	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179051750	C	C	179051750	3	2	133	1	0	0	0	0	1	0	0	0	18183	217	8	5	1012	5	ZNF639	3	179051750	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	7656304	179051750	18970680	226	119136											
ECE2	9718	broad.mit.edu	37	chr3	183967486	183967486	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccggcggttgagagcatgGcctctccaggggcaggtagg	18	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183967486	A	A	183967486	3	1	133	1	0	0	0	0	1	0	0	0	4930	1203	42	4	6	4	ECE2	3	183967486	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4915736	183967486	14054944	227	119137											
EIF4G1	1981	broad.mit.edu	37	chr3	184043360	184043360	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaacatcgagagcacatCaaagtgcagcagctcatggc	11	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184043360	G	G	184043360	3	3	133	1	0	0	0	0	1	0	0	0	5078	816	29	4	3124	4	EIF4G1	3	184043360	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	75874	184043360	13979070	228	119138											
FAM131A	131408	broad.mit.edu	37	chr3	184060021	184060021	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgagggcgaacaagagGctcgctttgcagcaggtgga	16	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184060021	C	C	184060021	3	2	133	1	0	0	0	0	1	0	0	0	5485	1203	42	4	507	4	FAM131A	3	184060021	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	16661	184060021	13962409	229	119139											
CHRD	8646	broad.mit.edu	37	chr3	184106762	184106762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagagtcgatgctgttccCgctgcacggcccaccggcgg	15	14	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184106762	A	A	184106762	3	1	133	1	0	0	0	0	1	0	0	0	3403	652	23	1	2877	1	CHRD	3	184106762	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	46741	184106762	13915668	230	119140											
SENP2	59343	broad.mit.edu	37	chr3	185347571	185347571	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatggggttctttgcagcAccagatgcctctcttccgga	10	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185347571	G	G	185347571	3	3	133	1	0	0	0	0	1	0	0	0	14160	173	6	5	1775	5	SENP2	3	185347571	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	1240809	185347571	12674859	231	119141											
TRA2B	6434	broad.mit.edu	37	chr3	185637312	185637312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagaaaggcaacacaacaCgcattcagtttgtaagtttt	8	8	1	1	rs59944908	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185637312	A	A	185637312	1	1	133	0	1	0	0	0	0	0	0	0	16558	551	19	3		3	TRA2B	3	185637312	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	289741	185637312	12385118	232	119142											
TBCCD1	55171	broad.mit.edu	37	chr3	186271936	186271936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagccaccgcgcccagcCttacattttttattacttta	6	13	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186271936	A	A	186271936	1	1	133	0	1	0	0	0	0	0	0	0	15754	696	24	2		2	TBCCD1	3	186271936	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	634624	186271936	11750494	233	119143											
LRRC33	375387	broad.mit.edu	37	chr3	196388616	196388616	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctgtgtgccaagactcgAaattcggtccgcacacaaca	10	12	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196388616	G	G	196388616	1	3	133	0	1	0	0	0	0	0	0	0	9075	261	9	5		5	LRRC33	3	196388616	3'UTR	SNP	A	TCGA-49-4487-01A-21D-1855-08	10116680	196388616	1633814	234	119144											
PDE6B	5158	broad.mit.edu	37	chr4	619540	619540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgaggacgggtgcccgcCggactgcgacagcctccggg	17	15	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	619540	A	A	619540	3	1	133	1	0	0	0	0	1	0	0	0	11740	652	23	1	127	1	PDE6B	4	619540	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08		619540	190534736	235	119145											
GAK	2580	broad.mit.edu	37	chr4	898374	898374	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgggcggctcctaaccgagTgggacccgcacacagaggcc	14	14	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	898374	C	C	898374	1	2	133	0	1	0	0	0	0	0	0	0	6257	1711	59	5		5	GAK	4	898374	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	278834	898374	190255902	236	119146											
POLN	353497	broad.mit.edu	37	chr4	2159472	2159474	+	Intron	DEL	AAG	-	-													aaaaaaaaaaaaaaaaaaaaAagaatatttagacgatttca					rs71644319		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2159474	-	-	2159472	6	5	133	0	1	1	0	1	0	0	0	0	12302	29	1	0		0	POLN	4	2159472	Intron	DEL	AAG	TCGA-49-4487-01A-21D-1855-08	1261098	2159472	188994804	237	119147											
RGS12	6002	broad.mit.edu	37	chr4	3429845	3429845	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataaacagaaaggtgtgccAgtgaaacagaacacagctgt	11	7	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3429845	T	T	3429845	2	4	133	1	0	0	0	0	0	0	0	1	13404	175	7	5		5	RGS12	4	3429845	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	1270373	3429845	187724431	238	119148											
MSX1	4487	broad.mit.edu	37	chr4	4864535	4864535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctggagcgcaagttccgcCagaagcagtacctgtccatc	11	14	0	1	rs104893850		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4864535	A	A	4864535	3	1	133	1	0	0	0	0	1	0	0	0	9989	595	21	2	583	2	MSX1	4	4864535	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1434690	4864535	186289741	239	119149											
STK32B	55351	broad.mit.edu	37	chr4	5333033	5333033	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaccatctgcagcagaatgTgcatttcacagaggggactg	11	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5333033	A	A	5333033	3	1	133	1	0	0	0	0	1	0	0	0	15416	1696	59	5	361	5	STK32B	4	5333033	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	468498	5333033	185821243	240	119150											
ARAP2	116984	broad.mit.edu	37	chr4	36179480	36179481	+	Missense_Mutation	DNP	CC	AT	AT													tgcaaagccacacactgtttCcacttaacacagtaaaaatt							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	36179481	AT	AT	36179480	3	1	133	1	0	0	0	0	1	0	0	0	841	855	30	3	3388	3	ARAP2	4	36179480	Missense_Mutation	DNP	CC	TCGA-49-4487-01A-21D-1855-08	30846447	36179480	154974796	241	119151											
GABRB1	2560	broad.mit.edu	37	chr4	47408631	47408631	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtggcaaatggcatctgtCctctcaatcttgaaaaagga	9	8	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47408631	A	A	47408631	1	1	133	0	1	0	0	0	0	0	0	0	6226	870	30	3		3	GABRB1	4	47408631	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	11229151	47408631	143745645	242	119152											
CORIN	10699	broad.mit.edu	37	chr4	47625744	47625744	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttttgttcattcgggcaGcagggcggcgcccacagtct	12	13	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47625744	A	A	47625744	3	1	133	1	0	0	0	0	1	0	0	0	3784	971	34	4	760	4	CORIN	4	47625744	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	217113	47625744	143528532	243	119153											
KDR	3791	broad.mit.edu	37	chr4	55968293	55968293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgctgcccttcatcttGttctattatctaactctgta	4	10	5	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55968293	T	T	55968293	1	4	133	0	1	0	0	0	0	0	0	0	8209	1392	48	3		3	KDR	4	55968293	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	8342549	55968293	135185983	244	119154											
SRD5A3	79644	broad.mit.edu	37	chr4	56230429	56230429	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagccaagtgccaatggatGgcaggaatggtgagtggatc	16	6	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56230429	C	C	56230429	3	2	133	1	0	0	0	0	1	0	0	0	15258	1348	47	4	563	4	SRD5A3	4	56230429	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	262136	56230429	134923847	245	119155											
LPHN3	23284	broad.mit.edu	37	chr4	62775293	62775293	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatagttgaaatctggtgaaAcagctgccaacattgctaga	9	7	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62775293	G	G	62775293	3	3	133	1	0	0	0	0	1	0	0	0	9004	43	2	5	1733	5	LPHN3	4	62775293	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	6544864	62775293	128378983	246	119156											
STAP1	26228	broad.mit.edu	37	chr4	68472007	68472007	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtttttctacccacaaTttctaggtcaagaacccagt	5	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68472007	G	G	68472007	1	3	133	0	1	0	0	0	0	0	0	0	15370	1508	52	5		5	STAP1	4	68472007	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	5696714	68472007	122682269	247	119157											
CSN1S1	1446	broad.mit.edu	37	chr4	70802196	70802196	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacatgaatggtatgaacaGggtaagaaacatcaatgaaa	9	4	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70802196	A	A	70802196	3	1	133	1	0	0	0	0	1	0	0	0	3981	1014	35	4	170	4	CSN1S1	4	70802196	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2330189	70802196	120352080	248	119158											
NUP54	53371	broad.mit.edu	37	chr4	77057381	77057381	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtgtgaattccactggCggaatattattgttgaaata	9	5	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77057381	A	A	77057381	2	1	133	1	0	0	0	0	0	0	0	1	10862	755	27	3		3	NUP54	4	77057381	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	6255185	77057381	114096895	249	119159											
FRAS1	80144	broad.mit.edu	37	chr4	79458272	79458272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgtgcctttctttgatcCcacggggacaatctacaatg	8	10	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79458272	A	A	79458272	3	1	133	1	0	0	0	0	1	0	0	0	6102	623	22	2	11577	2	FRAS1	4	79458272	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2400891	79458272	111696004	250	119160											
WDFY3	23001	broad.mit.edu	37	chr4	85731418	85731418	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttccatagcaacgagcaagGatgtaatgtacacaaatcct	7	9	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85731418	C	C	85731418	3	2	133	1	0	0	0	0	1	0	0	0	17397	1174	41	4	8876	4	WDFY3	4	85731418	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	6273146	85731418	105422858	251	119161											
DMP1	1758	broad.mit.edu	37	chr4	88580762	88580762	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgctggctaaagagtccTataaagtaagaagagaaaaa	9	4	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88580762	C	C	88580762	1	2	133	0	1	0	0	0	0	0	0	0	4623	1537	53	5		5	DMP1	4	88580762	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	2849344	88580762	102573514	252	119162											
SNCA	6622	broad.mit.edu	37	chr4	90743475	90743476	+	Missense_Mutation	DNP	TG	CC	CC													tccactgtcttctgggctacTgctgtcacacccgtcaccac							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	90743476	CC	CC	90743475	3	2	133	1	0	0	0	0	1	0	0	0	14954	1567	55	5	206	5	SNCA	4	90743475	Missense_Mutation	DNP	TG	TCGA-49-4487-01A-21D-1855-08	2162713	90743475	100410801	253	119163											
ADH6	130	broad.mit.edu	37	chr4	100131598	100131598	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatacaaaaattgccctcAgaattcaggcaagaggtaca	8	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100131598	G	G	100131598	2	3	133	1	0	0	0	0	0	0	0	1	312	175	7	5		5	ADH6	4	100131598	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	9388123	100131598	91022678	254	119164											
MTTP	4547	broad.mit.edu	37	chr4	100532599	100532599	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acattgggaaggctggtcttCacggtagccaggtaactcac	12	10	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100532599	T	T	100532599	3	4	133	1	0	0	0	0	1	0	0	0	10058	826	29	4	2032	4	MTTP	4	100532599	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	401001	100532599	90621677	255	119165											
BANK1	55024	broad.mit.edu	37	chr4	102942739	102942739	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatattgcctcattttccacAtatattccttgtaagttttt	4	8	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102942739	G	G	102942739	2	3	133	1	0	0	0	0	0	0	0	1	1314	204	8	5		5	BANK1	4	102942739	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	2410140	102942739	88211537	256	119166											
TACR3	6870	broad.mit.edu	37	chr4	104511146	104511146	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgctctcttgaagccagctCgaaatctgaggaaaagcagg	11	9	2	2	rs150288991		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104511146	T	T	104511146	3	4	133	1	0	0	0	0	1	0	0	0	15626	884	31	4	310	4	TACR3	4	104511146	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1568407	104511146	86643130	257	119167											
C4orf31	79625	broad.mit.edu	37	chr4	121966792	121966792	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttaataaagaaaatactGcagggagaatacctcttagg	8	5	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121966792	C	C	121966792	1	2	133	0	1	0	0	0	0	0	0	0	2284	1334	46	4		4	C4orf31	4	121966792	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	17455646	121966792	69187484	258	119168											
FAT4	79633	broad.mit.edu	37	chr4	126411064	126411064	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttctcccagcaggttttGatggctgcattgcttctatg	9	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126411064	C	C	126411064	3	2	133	1	0	0	0	0	1	0	0	0	5749	1290	45	4	13153	4	FAT4	4	126411064	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4444272	126411064	64743212	259	119169											
WDR17	116966	broad.mit.edu	37	chr4	177067375	177067375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttatattttcctagaaatGtacatatttataggagatat	6	4	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177067375	T	T	177067375	1	4	133	0	1	0	0	0	0	0	0	0	17404	1392	48	3		3	WDR17	4	177067375	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	50656311	177067375	14086901	260	119170											
VEGFC	7424	broad.mit.edu	37	chr4	177649043	177649043	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtttaaagaaggtgtttgtCgcgactccaaactccttccc	9	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177649043	T	T	177649043	2	4	133	1	0	0	0	0	0	0	0	1	17279	871	31	4		4	VEGFC	4	177649043	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	581668	177649043	13505233	261	119171											
FAT1	2195	broad.mit.edu	37	chr4	187522452	187522452	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctatagtcagttcctcgagCatacatgacaaccgcatgcg	9	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187522452	T	T	187522452	3	4	133	1	0	0	0	0	1	0	0	0	5746	710	25	4	2183	4	FAT1	4	187522452	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	9873409	187522452	3631824	262	119172											
PLEKHG4B	153478	broad.mit.edu	37	chr5	161838	161838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgcagacccagcccacaCctggagacatgaacgtggaa	10	14	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161838	A	A	161838	1	1	133	0	1	0	0	0	0	0	0	0	12167	522	18	3		3	PLEKHG4B	5	161838	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08		161838	180753422	263	119173											
EXOC3	11336	broad.mit.edu	37	chr5	466932	466932	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaccctggagcagggcccAgcacaggccagccccagcta	13	16	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	466932	T	T	466932	2	4	133	1	0	0	0	0	0	0	0	1	5345	175	7	5		5	EXOC3	5	466932	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	305094	466932	180448328	264	119174											
ADAMTS16	170690	broad.mit.edu	37	chr5	5200460	5200460	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcagccagatcctgtgcaAgcagccccaggctgtgcttc	12	14	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5200460	G	G	5200460	1	3	133	0	1	0	0	0	0	0	0	0	261	87	3	5		5	ADAMTS16	5	5200460	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	4733528	5200460	175714800	265	119175											
ADCY2	108	broad.mit.edu	37	chr5	7804849	7804849	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaggtgagcctcaaccCcatccacaaaccaccctggg	9	17	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7804849	T	T	7804849	1	4	133	0	1	0	0	0	0	0	0	0	294	638	22	4		4	ADCY2	5	7804849	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2604389	7804849	173110411	266	119176											
CTNND2	1501	broad.mit.edu	37	chr5	11412268	11412268	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagacacaaaggcatattagGgtagtaacagtggccccgtt	11	8	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11412268	C	C	11412268	1	2	133	0	1	0	0	0	0	0	0	0	4054	1247	43	4		4	CTNND2	5	11412268	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3607419	11412268	169502992	267	119177											
ANKH	56172	broad.mit.edu	37	chr5	14798275	14798275	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcacactggctataacaaGatggttttgttcatccgatg	9	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14798275	C	C	14798275	1	2	133	0	1	0	0	0	0	0	0	0	627	957	33	4		4	ANKH	5	14798275	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3386007	14798275	166116985	268	119178											
PRDM9	56979	broad.mit.edu	37	chr5	23524368	23524368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaggcctagaccagcagGtgatgggccatacctggatc	14	10	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23524368	T	T	23524368	1	4	133	0	1	0	0	0	0	0	0	0	12569	1276	44	3		3	PRDM9	5	23524368	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	8726093	23524368	157390892	269	119179											
CDH10	1008	broad.mit.edu	37	chr5	24498415	24498415	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctatatgagtatttccatCtctgtgtattctttcctctc	4	11	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24498415	T	T	24498415	1	4	133	0	1	0	0	0	0	0	0	0	3126	928	32	4		4	CDH10	5	24498415	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	974047	24498415	156416845	270	119180											
PDZD2	23037	broad.mit.edu	37	chr5	31847681	31847681	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatattgtactggcctgctGctggctcggaggcttttcag	13	10	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31847681	A	A	31847681	1	1	133	0	1	0	0	0	0	0	0	0	11795	1334	46	4		4	PDZD2	5	31847681	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	7349266	31847681	149067579	271	119181											
ADAMTS12	81792	broad.mit.edu	37	chr5	33637671	33637671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctgagatacaccattaCagctccttacctgggttaaa	7	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33637671	A	A	33637671	1	1	133	0	1	0	0	0	0	0	0	0	257	493	17	3		3	ADAMTS12	5	33637671	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1789990	33637671	147277589	272	119182											
ADAMTS12	81792	broad.mit.edu	37	chr5	33649781	33649781	+	Frame_Shift_Del	DEL	C	-	-													ggctcacagtcattttctttCccatcatgctggatgccgaa							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33649781	-	-	33649781	7	5	133	1	0	1	0	1	0	0	0	0	257	842	30	0	3640	0	ADAMTS12	5	33649781	Frame_Shift_Del	DEL	C	TCGA-49-4487-01A-21D-1855-08	12110	33649781	147265479	273	119183											
ADAMTS12	81792	broad.mit.edu	37	chr5	33662170	33662170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaagaagaggaagagattAgcatgggagagctcactgtg	15	4	1	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33662170	G	G	33662170	1	3	133	0	1	0	0	0	0	0	0	0	257	435	15	5		5	ADAMTS12	5	33662170	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	12389	33662170	147253090	274	119184											
CAPSL	133690	broad.mit.edu	37	chr5	35910605	35910605	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcataaattctttaaaatCaagggttcgattattatcgt	5	5	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35910605	A	A	35910605	3	1	133	1	0	0	0	0	1	0	0	0	2665	826	29	3	460	3	CAPSL	5	35910605	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2248435	35910605	145004655	275	119185											
EGFLAM	133584	broad.mit.edu	37	chr5	38352151	38352151	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttgaggctgttctgaacaGagatattttgggtataggaa	12	3	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38352151	T	T	38352151	1	4	133	0	1	0	0	0	0	0	0	0	5006	957	33	3		3	EGFLAM	5	38352151	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2441546	38352151	142563109	276	119186											
FYB	2533	broad.mit.edu	37	chr5	39170376	39170376	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagagctgttgcagccccTtgatcaactcagtttaaaag	9	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39170376	A	A	39170376	1	1	133	0	1	0	0	0	0	0	0	0	6184	1624	56	5		5	FYB	5	39170376	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	818225	39170376	141744884	277	119187											
C9	735	broad.mit.edu	37	chr5	39308436	39308436	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagatgatacccaaggcatCtctttatgtcttttagttca	6	10	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39308436	A	A	39308436	3	1	133	1	0	0	0	0	1	0	0	0	2469	913	32	3	559	3	C9	5	39308436	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	138060	39308436	141606824	278	119188											
IL31RA	133396	broad.mit.edu	37	chr5	55201862	55201862	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttacagctgaggcaatgagGatgccagtgtggttgttgca	14	6	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55201862	A	A	55201862	1	1	133	0	1	0	0	0	0	0	0	0	7761	1189	41	4		4	IL31RA	5	55201862	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	15893426	55201862	125713398	279	119189											
ACTBL2	345651	broad.mit.edu	37	chr5	56777979	56777979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatgaggtaatcagtcaGgtctctccctgccagatcca	8	13	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56777979	T	T	56777979	3	4	133	1	0	0	0	0	1	0	0	0	194	991	35	2	578	2	ACTBL2	5	56777979	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1576117	56777979	124137281	280	119190											
CD180	4064	broad.mit.edu	37	chr5	66481710	66481710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaggtaagattcatgaGtctgctgaaggttctattgt	10	5	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66481710	T	T	66481710	3	4	133	1	0	0	0	0	1	0	0	0	3002	1029	36	3	1767	3	CD180	5	66481710	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	9703731	66481710	114433550	281	119191											
MRPS27	23107	broad.mit.edu	37	chr5	71516727	71516727	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagacaggtggggccctggGggaccctattaggcagatgc	17	9	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71516727	T	T	71516727	1	4	133	0	1	0	0	0	0	0	0	0	9932	1247	43	2		2	MRPS27	5	71516727	3'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	5035017	71516727	109398533	282	119192											
SV2C	22987	broad.mit.edu	37	chr5	75505485	75505485	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgtgttgttagagtttGctttggctctgccctttgcg	12	8	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75505485	T	T	75505485	1	4	133	0	1	0	0	0	0	0	0	0	15537	1334	46	3		3	SV2C	5	75505485	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3988758	75505485	105409775	283	119193											
THBS4	7060	broad.mit.edu	37	chr5	79354471	79354471	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggggaataatttggttttGagtcacttagaaatgaccat	10	5	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79354471	C	C	79354471	1	2	133	0	1	0	0	0	0	0	0	0	15979	1305	45	4		4	THBS4	5	79354471	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3848986	79354471	101560789	284	119194											
LYSMD3	116068	broad.mit.edu	37	chr5	89815303	89815303	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcttgatatctgctaccTgtgggggggaaaaaaaagca	11	8	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89815303	A	A	89815303	1	1	133	0	1	0	0	0	0	0	0	0	9214	1594	55	5		5	LYSMD3	5	89815303	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	10460832	89815303	91099957	285	119195											
MCTP1	79772	broad.mit.edu	37	chr5	94050456	94050456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttatcccacagaagaatGgggctcacaggtcaccgtca	9	13	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94050456	T	T	94050456	1	4	133	0	1	0	0	0	0	0	0	0	9493	1363	47	2		2	MCTP1	5	94050456	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	4235153	94050456	86864804	286	119196											
ARSK	153642	broad.mit.edu	37	chr5	94922387	94922387	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaaaaaaagaaattaagaAtattagagcattttattatg	5	2	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94922387	G	G	94922387	3	3	133	1	0	0	0	0	1	0	0	0	1000	101	4	5	839	5	ARSK	5	94922387	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	871931	94922387	85992873	287	119197											
FTMT	94033	broad.mit.edu	37	chr5	121187547	121187547	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacagaaggggcgtgtgaCgcagtcaccgttgcctaggg	17	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121187547	A	A	121187547	1	1	133	0	1	0	0	0	0	0	0	0	6145	551	19	3		3	FTMT	5	121187547	5'Flank	SNP	C	TCGA-49-4487-01A-21D-1855-08	26265160	121187547	59727713	288	119198											
ADAMTS19	171019	broad.mit.edu	37	chr5	128956599	128956599	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctggcttttccattaactCatggtgtagtttgggacatg	10	8	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128956599	A	A	128956599	1	1	133	0	1	0	0	0	0	0	0	0	264	841	29	3		3	ADAMTS19	5	128956599	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	7769052	128956599	51958661	289	119199											
FBXL21	26223	broad.mit.edu	37	chr5	135276978	135276978	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatgaagaggaattcgagaCgttcttcaaagaagaaaccc	9	7	2	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135276978	T	T	135276978	3	4	133	1	0	0	0	0	1	0	0	0	5775	536	19	4	937	4	FBXL21	5	135276978	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	6320379	135276978	45638282	290	119200											
KLHL3	26249	broad.mit.edu	37	chr5	136969802	136969802	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttgtactgctccacagtGctcagacactggcgggaagc	14	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136969802	A	A	136969802	2	1	133	1	0	0	0	0	0	0	0	1	8454	1310	46	4		4	KLHL3	5	136969802	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	1692824	136969802	43945458	291	119201											
PCDHA7	56141	broad.mit.edu	37	chr5	140215061	140215061	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctattccagaggacgcccaaCcaggtaccgtcatcacattg	8	14	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140215061	G	G	140215061	3	3	133	1	0	0	0	0	1	0	0	0	11623	507	18	4	1095	4	PCDHA7	5	140215061	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3245259	140215061	40700199	292	119202											
PCDHB3	56132	broad.mit.edu	37	chr5	140482066	140482066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgctcaaggccacggaGcccgggctgttcggcgtgtg	16	13	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140482066	T	T	140482066	3	4	133	1	0	0	0	0	1	0	0	0	11637	962	34	3	1835	3	PCDHB3	5	140482066	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	267005	140482066	40433194	293	119203											
PCDHB6	56130	broad.mit.edu	37	chr5	140531059	140531059	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtaacagaaggcgcgctGgacagagagagcagagccga	16	9	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140531059	T	T	140531059	2	4	133	1	0	0	0	0	0	0	0	1	11640	1335	47	2		2	PCDHB6	5	140531059	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	48993	140531059	40384201	294	119204											
PCDHB8	56128	broad.mit.edu	37	chr5	140559195	140559195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactacgaggccctgcaggCgttcgagttccgggtgggcg	18	11	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559195	A	A	140559195	3	1	133	1	0	0	0	0	1	0	0	0	11642	768	27	3	1582	3	PCDHB8	5	140559195	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	28136	140559195	40356065	295	119205											
SLC25A2	83884	broad.mit.edu	37	chr5	140683346	140683346	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcacttttattgtgtcgaaGggctgcccagtcagtacaca	9	10	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140683346	A	A	140683346	2	1	133	1	0	0	0	0	0	0	0	1	14596	987	35	4		4	SLC25A2	5	140683346	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	124151	140683346	40231914	296	119206											
FCHSD1	89848	broad.mit.edu	37	chr5	141019878	141019878	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggtaggaaaacacagcCgggactgcactgggctgggc	15	11	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141019878	A	A	141019878	1	1	133	0	1	0	0	0	0	0	0	0	5846	667	23	1		1	FCHSD1	5	141019878	3'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	336532	141019878	39895382	297	119207											
TCERG1	10915	broad.mit.edu	37	chr5	145850158	145850158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagttcttagaaaattacGtcaaaacctttgagtgacat	7	6	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145850158	T	T	145850158	1	4	133	0	1	0	0	0	0	0	0	0	15807	1160	40	3		3	TCERG1	5	145850158	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	4830280	145850158	35065102	298	119208											
FBXO38	81545	broad.mit.edu	37	chr5	147793698	147793698	+	Splice_Site	DEL	G	-	-													ttaattgattgctctttttaGgcagaatggctaatgcggat							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147793698	-	-	147793698	8	5	133	1	0	1	0	1	0	0	1	0	5803	1014	35	0	1127	0	FBXO38	5	147793698	Splice_Site	DEL	G	TCGA-49-4487-01A-21D-1855-08	1943540	147793698	33121562	299	119209											
TCOF1	6949	broad.mit.edu	37	chr5	149743609	149743609	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggatgcgggaaggtctGtctagtcaattcttgtggag	16	5	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149743609	T	T	149743609	1	4	133	0	1	0	0	0	0	0	0	0	15830	1392	48	3		3	TCOF1	5	149743609	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1949911	149743609	31171651	300	119210											
FAT2	2196	broad.mit.edu	37	chr5	150911188	150911188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctgccttgctcgttcccGctgaccacgcggtagccggt	11	16	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150911188	T	T	150911188	3	4	133	1	0	0	0	0	1	0	0	0	5747	1078	38	3	3322	3	FAT2	5	150911188	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1167579	150911188	30004072	301	119211											
GRIA1	2890	broad.mit.edu	37	chr5	153029928	153029928	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtcctggatacagctgctGagaagaactggcaggtgaca	13	8	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153029928	C	C	153029928	3	2	133	1	0	0	0	0	1	0	0	0	6833	1291	45	4	513	4	GRIA1	5	153029928	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2118740	153029928	27885332	302	119212											
STC2	8614	broad.mit.edu	37	chr5	172755225	172755225	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattaacctcccgtcgggaGacctggatcctttgtgctcc	10	13	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172755225	A	A	172755225	1	1	133	0	1	0	0	0	0	0	0	0	15394	957	33	4		4	STC2	5	172755225	5'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	19725297	172755225	8160035	303	119213											
CDHR2	54825	broad.mit.edu	37	chr5	176022636	176022636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggacagctggaggggccatCctacaccaacgctggcctgg	14	13	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176022636	A	A	176022636	3	1	133	1	0	0	0	0	1	0	0	0	3149	855	30	3	4018	3	CDHR2	5	176022636	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3267411	176022636	4892624	304	119214											
DBN1	1627	broad.mit.edu	37	chr5	176887426	176887426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggacggggggtggggcctaGgactacctggtcgatggttg	20	8	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176887426	A	A	176887426	1	1	133	0	1	0	0	0	0	0	0	0	4285	1015	35	4		4	DBN1	5	176887426	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	864790	176887426	4027834	305	119215											
TMED9	54732	broad.mit.edu	37	chr5	177020659	177020659	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttcctccaggtcatcctGgcccggcagtatggctccga	10	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177020659	A	A	177020659	2	1	133	1	0	0	0	0	0	0	0	1	16135	1335	47	4		4	TMED9	5	177020659	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	133233	177020659	3894601	306	119216											
FAM153C	653316	broad.mit.edu	37	chr5	177468724	177468724	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacctggaggagcatctgcCagggcagacagtctctgagg	15	10	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177468724	T	T	177468724	3	4	133	1	0	0	0	0	1	0	0	0	5508	594	21	4	182	4	FAM153C	5	177468724	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	448065	177468724	3446536	307	119217											
RNF130	55819	broad.mit.edu	37	chr5	179440335	179440335	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatataaaataaatatataActcaagtgacatttaaaact	2	5	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179440335	T	T	179440335	1	4	133	0	1	0	0	0	0	0	0	0	13549	58	2	5		5	RNF130	5	179440335	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	1971611	179440335	1474925	308	119218											
EXOC2	55770	broad.mit.edu	37	chr6	633069	633069	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacatactattttacttgcaGacatccattctgccgtcagg	7	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	633069	C	C	633069	3	2	133	1	0	0	0	0	1	0	0	0	5344	942	33	4	2711	4	EXOC2	6	633069	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08		633069	170481998	309	119219											
MAK	4117	broad.mit.edu	37	chr6	10764813	10764813	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgtcctgaaaactgcccccGaccagtttttgtgttccagg	9	13	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10764813	T	T	10764813	2	4	133	1	0	0	0	0	0	0	0	1	9289	1057	37	3		3	MAK	6	10764813	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	10131744	10764813	160350254	310	119220											
MYLIP	29116	broad.mit.edu	37	chr6	16145361	16145361	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acactcgcctctgaagtcctCagaaagcagcatgaactgca	8	13	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16145361	G	G	16145361	4	3	133	1	0	0	0	0	0	1	0	0	10149	838	29	4	1083	4	MYLIP	6	16145361	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5380548	16145361	154969706	311	119221											
KIAA0319	9856	broad.mit.edu	37	chr6	24582479	24582479	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtctccagttacttacttGagagaggttaagagtttgct	10	7	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24582479	C	C	24582479	3	2	133	1	0	0	0	0	1	0	0	0	8238	1299	45	4	2093	4	KIAA0319	6	24582479	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	8437118	24582479	146532588	312	119222											
TRIM10	10107	broad.mit.edu	37	chr6	30124730	30124730	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttacccagaaacatcttcAtctccctctgcagcgggagg	8	14	5	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30124730	G	G	30124730	3	3	133	1	0	0	0	0	1	0	0	0	16610	217	8	5	664	5	TRIM10	6	30124730	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	5542251	30124730	140990337	313	119223											
SYNGAP1	8831	broad.mit.edu	37	chr6	33403145	33403145	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatggaaggtggggggcagaGaggtctagagaaagtggcac	20	4	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33403145	A	A	33403145	1	1	133	0	1	0	0	0	0	0	0	0	15566	957	33	4		4	SYNGAP1	6	33403145	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3278415	33403145	137711922	314	119224											
SCUBE3	222663	broad.mit.edu	37	chr6	35208301	35208301	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcacccccagccaccctGgccccctcacctcttcaccc	4	25	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35208301	A	A	35208301	1	1	133	0	1	0	0	0	0	0	0	0	14059	1363	47	4		4	SCUBE3	6	35208301	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1805156	35208301	135906766	315	119225											
DEF6	50619	broad.mit.edu	37	chr6	35280244	35280244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggccgctgcctgcggggcGtgggccgggacaccctcagc	18	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35280244	T	T	35280244	3	4	133	1	0	0	0	0	1	0	0	0	4419	1145	40	3	603	3	DEF6	6	35280244	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	71943	35280244	135834823	316	119226											
PPIL1	51645	broad.mit.edu	37	chr6	36839473	36839473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaagaaaacataaaCtaatgttggcttaactgtac	5	5	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36839473	A	A	36839473	1	1	133	0	1	0	0	0	0	0	0	0	12427	580	20	3		3	PPIL1	6	36839473	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1559229	36839473	134275594	317	119227											
LRFN2	57497	broad.mit.edu	37	chr6	40400795	40400795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacagtacttggggcaggCgtcgaccacggcaaacgcca	13	13	0	0	rs149939756		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40400795	A	A	40400795	3	1	133	1	0	0	0	0	1	0	0	0	9025	768	27	3	2319	3	LRFN2	6	40400795	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3561322	40400795	130714272	318	119228											
BYSL	705	broad.mit.edu	37	chr6	41897940	41897940	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggttgagacagtcatgtcaGaggtgtcgggcttccctatg	14	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41897940	T	T	41897940	4	4	133	1	0	0	0	0	0	1	0	0	1586	943	33	3	512	3	BYSL	6	41897940	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1497145	41897940	129217127	319	119229											
C6orf138	442213	broad.mit.edu	37	chr6	47847511	47847511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctctatgtttgtgaatgGgctggcacccatgccaaaag	11	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47847511	T	T	47847511	3	4	133	1	0	0	0	0	1	0	0	0	2355	1232	43	2	1475	2	C6orf138	6	47847511	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	5949571	47847511	123267556	320	119230											
CRISP3	10321	broad.mit.edu	37	chr6	49698963	49698963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtctattagcccaattacCactgaaatttgaaataaaaa	4	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49698963	A	A	49698963	3	1	133	1	0	0	0	0	1	0	0	0	3913	608	21	2	222	2	CRISP3	6	49698963	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1851452	49698963	121416104	321	119231											
PAQR8	85315	broad.mit.edu	37	chr6	52268474	52268474	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttggcgtgagcgtttacCaatatggcagtgctttggct	13	7	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52268474	G	G	52268474	3	3	133	1	0	0	0	0	1	0	0	0	11535	595	21	4	465	4	PAQR8	6	52268474	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2569511	52268474	118846593	322	119232											
GSTA5	221357	broad.mit.edu	37	chr6	52700880	52700880	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgttcactgttccctcatCtccatgggactctgcaatac	6	14	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52700880	A	A	52700880	1	1	133	0	1	0	0	0	0	0	0	0	6900	928	32	3		3	GSTA5	6	52700880	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	432406	52700880	118414187	323	119233											
DST	667	broad.mit.edu	37	chr6	56468675	56468675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagccatctctttagacCctgaagtacattccaaatgg	7	11	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468675	A	A	56468675	1	1	133	0	1	0	0	0	0	0	0	0	4823	638	22	2		2	DST	6	56468675	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3767795	56468675	114646392	324	119234											
DST	667	broad.mit.edu	37	chr6	56765373	56765373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccagacgggcagctgcgGccgctgcaactcgtcttcta	11	15	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56765373	T	T	56765373	3	4	133	1	0	0	0	0	1	0	0	0	4823	1218	42	3		3	DST	6	56765373	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	296698	56765373	114349694	325	119235											
COL19A1	1310	broad.mit.edu	37	chr6	70847569	70847569	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatctctcttctgctttgtCttgaaagggtgaaactggac	9	8	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70847569	A	A	70847569	1	1	133	0	1	0	0	0	0	0	0	0	3708	928	32	3		3	COL19A1	6	70847569	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	14082196	70847569	100267498	326	119236											
DDX43	55510	broad.mit.edu	37	chr6	74123487	74123487	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccacagacaaagtcattgTcttcgtttctcgaaaagctg	7	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74123487	C	C	74123487	3	2	133	1	0	0	0	0	1	0	0	0	4396	1667	58	5	1521	5	DDX43	6	74123487	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	3275918	74123487	96991580	327	119237											
CD109	135228	broad.mit.edu	37	chr6	74512935	74512935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgactatctgtctatttttGtgtctaggttaccagagaga	9	6	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74512935	T	T	74512935	1	4	133	0	1	0	0	0	0	0	0	0	2993	1392	48	3		3	CD109	6	74512935	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	389448	74512935	96602132	328	119238											
IBTK	25998	broad.mit.edu	37	chr6	82922532	82922532	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcaaggatagataaaaatTaacaattgatattcccctac	4	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82922532	C	C	82922532	1	2	133	0	1	0	0	0	0	0	0	0	7546	1769	61	5		5	IBTK	6	82922532	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	8409597	82922532	88192535	329	119239											
SNAP91	9892	broad.mit.edu	37	chr6	84417477	84417477	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caccagcatcccaggcgcctCtgccgtgcgcatgtccctct	9	19	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84417477	G	G	84417477	1	3	133	0	1	0	0	0	0	0	0	0	14947	928	32	4		4	SNAP91	6	84417477	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1494945	84417477	86697590	330	119240											
C6orf165	154313	broad.mit.edu	37	chr6	88125318	88125318	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgaagtagaattgccAtatccaatccagtttttctc	5	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88125318	G	G	88125318	1	3	133	0	1	0	0	0	0	0	0	0	2364	232	8	5		5	C6orf165	6	88125318	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	3707841	88125318	82989749	331	119241											
FHL5	9457	broad.mit.edu	37	chr6	97063749	97063749	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaagttttagaaaatattCatgtagtttagagtggaaaa	8	2	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97063749	T	T	97063749	1	4	133	0	1	0	0	0	0	0	0	0	5938	841	29	4		4	FHL5	6	97063749	3'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	8938431	97063749	74051318	332	119242											
ASCC3	10973	broad.mit.edu	37	chr6	100978896	100978896	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtggaatttgcacgccctCaaactgctgggacaaaaagt	10	9	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100978896	G	G	100978896	1	3	133	0	1	0	0	0	0	0	0	0	1037	841	29	4		4	ASCC3	6	100978896	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3915147	100978896	70136171	333	119243											
HS3ST5	222537	broad.mit.edu	37	chr6	114378474	114378474	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtaaaatttttgattaaaagGatgaaagaatttgcgcaatt	8	2	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114378474	C	C	114378474	3	2	133	1	0	0	0	0	1	0	0	0	7435	1174	41	4	56	4	HS3ST5	6	114378474	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	13399578	114378474	56736593	334	119244											
RFX6	222546	broad.mit.edu	37	chr6	117249929	117249929	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgttacaggatactaTggaagcaacataaactaccc	6	9	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117249929	C	C	117249929	2	2	133	1	0	0	0	0	0	0	0	1	13375	1471	51	5		5	RFX6	6	117249929	Silent	SNP	T	TCGA-49-4487-01A-21D-1855-08	2871455	117249929	53865138	335	119245											
LAMA2	3908	broad.mit.edu	37	chr6	129511227	129511227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttaaaaatatcattataCgttaaatatagttgagaggg	7	2	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129511227	A	A	129511227	1	1	133	0	1	0	0	0	0	0	0	0	8678	551	19	3		3	LAMA2	6	129511227	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	12261298	129511227	41603840	336	119246											
L3MBTL3	84456	broad.mit.edu	37	chr6	130399809	130399809	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaatgtggctaatactAttcgtagacttcaagagtag	8	5	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130399809	G	G	130399809	1	3	133	0	1	0	0	0	0	0	0	0	8665	464	16	5		5	L3MBTL3	6	130399809	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	888582	130399809	40715258	337	119247											
ENPP3	5169	broad.mit.edu	37	chr6	132054698	132054698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgagccgcaattgtgggCgtaatttttttctctctctc	11	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132054698	T	T	132054698	1	4	133	0	1	0	0	0	0	0	0	0	5173	783	27	4		4	ENPP3	6	132054698	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1654889	132054698	39060369	338	119248											
EYA4	2070	broad.mit.edu	37	chr6	133802480	133802480	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtgcttgggattataaatCtcttttttgccatcaggagg	11	6	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133802480	A	A	133802480	1	1	133	0	1	0	0	0	0	0	0	0	5374	928	32	3		3	EYA4	6	133802480	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1747782	133802480	37312587	339	119249											
BCLAF1	9774	broad.mit.edu	37	chr6	136594278	136594278	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtggctttctgatacgAagtgaaccgctcgtttaggg	12	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136594278	T	T	136594278	3	4	133	1	0	0	0	0	1	0	0	0	1388	246	9	5	890	5	BCLAF1	6	136594278	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	2791798	136594278	34520789	340	119250											
SYNE1	23345	broad.mit.edu	37	chr6	152470533	152470533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagagtctgagctctcacCcactatcaatacaacccaat	4	15	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152470533	A	A	152470533	1	1	133	0	1	0	0	0	0	0	0	0	15564	638	22	2		2	SYNE1	6	152470533	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	15876255	152470533	18644534	341	119251											
EZR	7430	broad.mit.edu	37	chr6	159197436	159197436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaatagaatcctttggaacTtacaggtgccttcttgtcga	9	8	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159197436	A	A	159197436	1	1	133	0	1	0	0	0	0	0	0	0	5378	1624	56	5		5	EZR	6	159197436	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	6726903	159197436	11917631	342	119252											
FNDC1	84624	broad.mit.edu	37	chr6	159653826	159653826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccaatgcgccatcacggtCcaccatgtcctcctccgtct	6	19	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159653826	A	A	159653826	3	1	133	1	0	0	0	0	1	0	0	0	6026	855	30	3	2324	3	FNDC1	6	159653826	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	456390	159653826	11461241	343	119253											
PNLDC1	154197	broad.mit.edu	37	chr6	160240112	160240112	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtttgatgtcaggcgactCacaagaagccagttcttact	9	9	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160240112	A	A	160240112	2	1	133	1	0	0	0	0	0	0	0	1	12243	813	29	3		3	PNLDC1	6	160240112	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	586286	160240112	10874955	344	119254											
IGF2R	3482	broad.mit.edu	37	chr6	160469384	160469384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagctctttaaaagcataTacattttgctttgaaatttt	5	5	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160469384	C	C	160469384	1	2	133	0	1	0	0	0	0	0	0	0	7646	1421	49	5		5	IGF2R	6	160469384	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	229272	160469384	10645683	345	119255											
C6orf118	168090	broad.mit.edu	37	chr6	165713992	165713992	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctggaggaaaaacagaGtcagcccatttcagggtggc	13	10	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165713992	A	A	165713992	1	1	133	0	1	0	0	0	0	0	0	0	2346	1044	36	4		4	C6orf118	6	165713992	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	5244608	165713992	5401075	346	119256											
C6orf118	168090	broad.mit.edu	37	chr6	165714099	165714099	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggcggggcggcacaggGggccagtctcgggggttctg	22	9	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165714099	A	A	165714099	1	1	133	0	1	0	0	0	0	0	0	0	2346	1247	43	4		4	C6orf118	6	165714099	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	107	165714099	5400968	347	119257											
C6orf70	55780	broad.mit.edu	37	chr6	170160108	170160108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttttccttatagctttgCgtagatatttgcaaagtcag	7	7	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170160108	A	A	170160108	1	1	133	0	1	0	0	0	0	0	0	0	2394	783	27	3		3	C6orf70	6	170160108	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4446009	170160108	954959	348	119258											
FTSJ2	29960	broad.mit.edu	37	chr7	2278757	2278757	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacatcgcttttgaaaatgtGagggatctatgcatgcacaa	9	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2278757	C	C	2278757	1	2	133	0	1	0	0	0	0	0	0	0	6148	1305	45	4		4	FTSJ2	7	2278757	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08		2278757	156859906	349	119259											
SLC29A4	222962	broad.mit.edu	37	chr7	5339968	5339968	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggagtgtttagggatGgggatgtggctagaggctgt	19	5	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5339968	A	A	5339968	1	1	133	0	1	0	0	0	0	0	0	0	14651	1363	47	4		4	SLC29A4	7	5339968	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3061211	5339968	153798695	350	119260											
SLC29A4	222962	broad.mit.edu	37	chr7	5340083	5340083	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcccgtggactggcggGgcacccacctgctggcctgc	14	18	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5340083	A	A	5340083	3	1	133	1	0	0	0	0	1	0	0	0	14651	1232	43	4	1274	4	SLC29A4	7	5340083	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	115	5340083	153798580	351	119261											
AIMP2	7965	broad.mit.edu	37	chr7	6054707	6054707	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgcatggcaaagtaagacAagtgatcaaatttaaacaac	8	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6054707	T	T	6054707	1	4	133	0	1	0	0	0	0	0	0	0	434	145	5	5		5	AIMP2	7	6054707	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	714624	6054707	153083956	352	119262											
DAGLB	221955	broad.mit.edu	37	chr7	6449551	6449551	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccacgctgtccaaggcccGcatcaggatgtctggcatgt	12	13	2	0	rs138713047	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6449551	A	A	6449551	3	1	133	1	0	0	0	0	1	0	0	0	4260	1086	38	4	86	4	DAGLB	7	6449551	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	394844	6449551	152689112	353	119263											
C1GALT1	56913	broad.mit.edu	37	chr7	7283154	7283154	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttccactacttttttaGggtcctggttgctgctctga	9	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7283154	T	T	7283154	5	4	133	1	0	0	0	0	0	0	1	0	1972	1014	35	2	898	2	C1GALT1	7	7283154	Splice_Site	SNP	G	TCGA-49-4487-01A-21D-1855-08	833603	7283154	151855509	354	119264											
SCIN	85477	broad.mit.edu	37	chr7	12679892	12679892	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattttcaaaaagacaacAtaagaacacatttggaacta	4	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12679892	G	G	12679892	1	3	133	0	1	0	0	0	0	0	0	0	14018	232	8	5		5	SCIN	7	12679892	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	5396738	12679892	146458771	355	119265											
BZW2	28969	broad.mit.edu	37	chr7	16744381	16744381	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcttccacagattttacttGattttctaaaactaaaattc	2	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16744381	C	C	16744381	1	2	133	0	1	0	0	0	0	0	0	0	1589	1305	45	4		4	BZW2	7	16744381	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	4064489	16744381	142394282	356	119266											
AHR	196	broad.mit.edu	37	chr7	17375401	17375401	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttatatcattgtaactcagaGaccactaacgtaagcacaaa	5	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17375401	A	A	17375401	3	1	133	1	0	0	0	0	1	0	0	0	416	942	33	4	1185	4	AHR	7	17375401	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	631020	17375401	141763262	357	119267											
NUPL2	11097	broad.mit.edu	37	chr7	23221741	23221741	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccttcaaggccggtgcCgctttggagatcggtgctgg	14	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23221741	T	T	23221741	3	4	133	1	0	0	0	0	1	0	0	0	10870	652	23	4	39	4	NUPL2	7	23221741	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5846340	23221741	135916922	358	119268											
GPNMB	10457	broad.mit.edu	37	chr7	23299726	23299726	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacgggcatatgttcccatCgcacaagtgaaagatgtgta	12	8	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23299726	T	T	23299726	2	4	133	1	0	0	0	0	0	0	0	1	6685	874	31	4		4	GPNMB	7	23299726	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	77985	23299726	135838937	359	119269											
IGF2BP3	10643	broad.mit.edu	37	chr7	23401270	23401270	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagttttctttctacttcctTccttttacaaatttgaaagc	3	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23401270	A	A	23401270	1	1	133	0	1	0	0	0	0	0	0	0	7645	1798	62	5		5	IGF2BP3	7	23401270	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	101544	23401270	135737393	360	119270											
OSBPL3	26031	broad.mit.edu	37	chr7	24874132	24874132	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagggggctgggaatctgCgcggccttgtccaggagctc	16	12	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24874132	A	A	24874132	2	1	133	1	0	0	0	0	0	0	0	1	11373	755	27	3		3	OSBPL3	7	24874132	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1472862	24874132	134264531	361	119271											
LOC402644	402644	broad.mit.edu	37	chr7	28319036	28319036	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccatggacaagatgccagGacctgtacgctttaggataa	11	9	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28319036	T	T	28319036	3	4	133	1	0	0	0	0	1	0	0	0	8961	1174	41	3	197	3	LOC402644	7	28319036	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3444904	28319036	130819627	362	119272											
AVL9	23080	broad.mit.edu	37	chr7	32969823	32969823	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaataaaaaggagattcttaGagaaaattcaaaactacatt	6	4	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32969823	C	C	32969823	1	2	133	0	1	0	0	0	0	0	0	0	1233	957	33	4		4	AVL9	7	32969823	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	4650787	32969823	126168840	363	119273											
KIAA0895	23366	broad.mit.edu	37	chr7	36373515	36373515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccgtacacaataatccCatcttgtattggggtccttg	9	11	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36373515	A	A	36373515	3	1	133	1	0	0	0	0	1	0	0	0	8267	595	21	2	318	2	KIAA0895	7	36373515	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3403692	36373515	122765148	364	119274											
C7orf10	79783	broad.mit.edu	37	chr7	40899957	40899957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaagatgtcagaggccaGgccgcccccgctgctcgggc	14	15	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40899957	T	T	40899957	3	4	133	1	0	0	0	0	1	0	0	0	2401	1000	35	2	1242	2	C7orf10	7	40899957	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4526442	40899957	118238706	365	119275											
GLI3	2737	broad.mit.edu	37	chr7	42187809	42187809	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcctgaacaagtgccgacTggcatgggcacttacggtag	13	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42187809	A	A	42187809	1	1	133	0	1	0	0	0	0	0	0	0	6503	1595	55	5		5	GLI3	7	42187809	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	1287852	42187809	116950854	366	119276											
HECW1	23072	broad.mit.edu	37	chr7	43508595	43508595	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgacgggatgctcgcaattTtgaacgctaccagcacaacc	9	14	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43508595	A	A	43508595	3	1	133	1	0	0	0	0	1	0	0	0	7109	1841	64	5	3044	5	HECW1	7	43508595	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	1320786	43508595	115630068	367	119277											
URGCP	55665	broad.mit.edu	37	chr7	43927062	43927062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgcttttatttctggggCtacttctcccaaatctgaat	7	9	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43927062	A	A	43927062	3	1	133	1	0	0	0	0	1	0	0	0	17152	797	28	3	2747	3	URGCP	7	43927062	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	418467	43927062	115211601	368	119278											
ZMIZ2	83637	broad.mit.edu	37	chr7	44798859	44798859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccttttttctcccctcgGgcattttgcctctttttcag	6	13	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44798859	T	T	44798859	1	4	133	0	1	0	0	0	0	0	0	0	17823	1247	43	2		2	ZMIZ2	7	44798859	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	871797	44798859	114339804	369	119279											
IGFBP1	3484	broad.mit.edu	37	chr7	45930284	45930284	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtacctatgatggctcgaagGctctccatgtcaccaacatc	8	13	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45930284	C	C	45930284	3	2	133	1	0	0	0	0	1	0	0	0	7648	1203	42	4	493	4	IGFBP1	7	45930284	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1131425	45930284	113208379	370	119280											
TNS3	64759	broad.mit.edu	37	chr7	47440553	47440553	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaagtagctgcagcggGggacacacgttcccggcaag	13	11	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47440553	A	A	47440553	1	1	133	0	1	0	0	0	0	0	0	0	16467	1247	43	4		4	TNS3	7	47440553	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1510269	47440553	111698110	371	119281											
PKD1L1	168507	broad.mit.edu	37	chr7	47921703	47921703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaggaagataaaccaagcCaatagatgttaaagaaaaaa	8	5	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47921703	A	A	47921703	1	1	133	0	1	0	0	0	0	0	0	0	12059	609	21	2		2	PKD1L1	7	47921703	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	481150	47921703	111216960	372	119282											
PHKG1	5260	broad.mit.edu	37	chr7	56149336	56149336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtaccttgaacttccccCgggggctgaagtgccgcact	11	13	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56149336	A	A	56149336	3	1	133	1	0	0	0	0	1	0	0	0	11941	652	23	1	266	1	PHKG1	7	56149336	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	8227633	56149336	102989327	373	119283											
ZNF479	90827	broad.mit.edu	37	chr7	57188235	57188235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattcttcacatttgtagGgtctctctccagtatgaatt	6	10	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188235	T	T	57188235	3	4	133	1	0	0	0	0	1	0	0	0	18060	1232	43	2	691	2	ZNF479	7	57188235	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1038899	57188235	101950428	374	119284											
WBSCR17	64409	broad.mit.edu	37	chr7	71036294	71036294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccatgataggctgctcGttcgtggtcaacaggaagtt	12	10	1	1	rs144028983	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71036294	T	T	71036294	2	4	133	1	0	0	0	0	0	0	0	1	17391	1132	40	3		3	WBSCR17	7	71036294	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	13848059	71036294	88102369	375	119285											
HGF	3082	broad.mit.edu	37	chr7	81374493	81374493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcaaaatcaaaaacacCactgttgcatttaaagaaca	5	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81374493	A	A	81374493	1	1	133	0	1	0	0	0	0	0	0	0	7152	609	21	2		2	HGF	7	81374493	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	10338199	81374493	77764170	376	119286											
PCLO	27445	broad.mit.edu	37	chr7	82538271	82538271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagaccatgtccattttcCaaacgagactccctgggttt	7	13	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82538271	A	A	82538271	3	1	133	1	0	0	0	0	1	0	0	0	11677	593	21	2	2158	2	PCLO	7	82538271	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1163778	82538271	76600392	377	119287											
PCLO	27445	broad.mit.edu	37	chr7	82584133	82584133	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagaagttaccatagtacCcaggtccactatctcatggc	8	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82584133	T	T	82584133	3	4	133	1	0	0	0	0	1	0	0	0	11677	623	22	4	9393	4	PCLO	7	82584133	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	45862	82584133	76554530	378	119288											
PCLO	27445	broad.mit.edu	37	chr7	82764398	82764398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttgaatctgatgcaggtCgaggtatggctttagaatca	11	5	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82764398	A	A	82764398	3	1	133	1	0	0	0	0	1	0	0	0	11677	884	31	3	13069	3	PCLO	7	82764398	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	180265	82764398	76374265	379	119289											
SRI	6717	broad.mit.edu	37	chr7	87837825	87837825	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatttctaagacttacatcAtcatatgggaaattcacaac	4	8	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87837825	G	G	87837825	2	3	133	1	0	0	0	0	0	0	0	1	15267	214	8	5		5	SRI	7	87837825	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	5073427	87837825	71300838	380	119290											
ZNF804B	219578	broad.mit.edu	37	chr7	88847491	88847491	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcagaaaagaagtccaCagcaaaggccctggaagatg	11	8	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88847491	G	G	88847491	3	3	133	1	0	0	0	0	1	0	0	0	18300	478	17	4	137	4	ZNF804B	7	88847491	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1009666	88847491	70291172	381	119291											
C7orf63	79846	broad.mit.edu	37	chr7	89897597	89897597	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacctgtttatctttctggCaggtgacttaatgaaaatac	8	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89897597	T	T	89897597	1	4	133	0	1	0	0	0	0	0	0	0	2434	725	25	4		4	C7orf63	7	89897597	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1050106	89897597	69241066	382	119292											
HEPACAM2	253012	broad.mit.edu	37	chr7	92848879	92848879	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttcaaagaagagtggcttCtaggtactgactattctagt	9	6	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92848879	A	A	92848879	1	1	133	0	1	0	0	0	0	0	0	0	7120	928	32	3		3	HEPACAM2	7	92848879	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2951282	92848879	66289784	383	119293											
DYNC1I1	1780	broad.mit.edu	37	chr7	95657482	95657482	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctctctctccttttccctGacagtcctctgtgatgtcgg	7	15	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95657482	T	T	95657482	1	4	133	0	1	0	0	0	0	0	0	0	4882	1305	45	3		3	DYNC1I1	7	95657482	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2808603	95657482	63481181	384	119294											
SMURF1	57154	broad.mit.edu	37	chr7	98655033	98655033	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggcaggaaagtgtttgGttcttacatccggtatcttt	11	6	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98655033	A	A	98655033	1	1	133	0	1	0	0	0	0	0	0	0	14933	1276	44	4		4	SMURF1	7	98655033	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2997551	98655033	60483630	385	119295											
GPC2	221914	broad.mit.edu	37	chr7	99773471	99773471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtaggagtgggagaagagCtgggtcagagagtgctgggc	20	6	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99773471	A	A	99773471	3	1	133	1	0	0	0	0	1	0	0	0	6663	796	28	3	1399	3	GPC2	7	99773471	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1118438	99773471	59365192	386	119296											
TFR2	7036	broad.mit.edu	37	chr7	100229466	100229466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtctgcactgatgggctGggctgggatgctgggaaggc	18	7	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100229466	T	T	100229466	3	4	133	1	0	0	0	0	1	0	0	0	15934	1357	47	2	1380	2	TFR2	7	100229466	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	455995	100229466	58909197	387	119297											
CUX1	1523	broad.mit.edu	37	chr7	101842076	101842076	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcttaccacacttgtttttCaacagagaatccaggccaga	6	11	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101842076	T	T	101842076	1	4	133	0	1	0	0	0	0	0	0	0	4097	841	29	4		4	CUX1	7	101842076	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1612610	101842076	57296587	388	119298											
FBXL13	222235	broad.mit.edu	37	chr7	102608486	102608486	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagcattccacagtgagtTtagttgtgtcatcaacatcc	7	10	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102608486	A	A	102608486	3	1	133	1	0	0	0	0	1	0	0	0	5766	1841	64	5	1689	5	FBXL13	7	102608486	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	766410	102608486	56530177	389	119299											
RELN	5649	broad.mit.edu	37	chr7	103205757	103205757	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggtagacagtgatccgCttccaattctggaatctttc	10	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103205757	T	T	103205757	2	4	133	1	0	0	0	0	0	0	0	1	13328	796	28	4		4	RELN	7	103205757	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	597271	103205757	55932906	390	119300											
RELN	5649	broad.mit.edu	37	chr7	103338439	103338439	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcttcatacacttcacctAcacgaagattttcctgcttc	5	13	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103338439	T	T	103338439	3	4	133	1	0	0	0	0	1	0	0	0	13328	391	14	5	9602	5	RELN	7	103338439	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	132682	103338439	55800224	391	119301											
LAMB1	3912	broad.mit.edu	37	chr7	107572810	107572810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaggaggcccctggggGtgttccacaggtctgcaaca	15	11	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107572810	T	T	107572810	3	4	133	1	0	0	0	0	1	0	0	0	8682	1261	44	3	1187	3	LAMB1	7	107572810	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4234371	107572810	51565853	392	119302											
NRCAM	4897	broad.mit.edu	37	chr7	107799647	107799647	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctagattgatcaatacaGcatggtcccatggaaaatat	8	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107799647	T	T	107799647	1	4	133	0	1	0	0	0	0	0	0	0	10739	986	34	3		3	NRCAM	7	107799647	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	226837	107799647	51339016	393	119303											
FOXP2	93986	broad.mit.edu	37	chr7	114304340	114304340	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcactaggctgccttggcaGagagcagtttacctttgcta	10	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114304340	C	C	114304340	3	2	133	1	0	0	0	0	1	0	0	0	6087	943	33	4	2077	4	FOXP2	7	114304340	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	6504693	114304340	44834323	394	119304											
CFTR	1080	broad.mit.edu	37	chr7	117149094	117149094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattcttttgcagagaatgGgatagagagctggcttcaaa	11	5	2	2	rs121909025		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117149094	T	T	117149094	3	4	133	1	0	0	0	0	1	0	0	0	3324	1241	43	2	181	2	CFTR	7	117149094	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2844754	117149094	41989569	395	119305											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432096	117432097	+	Missense_Mutation	DNP	CC	AA	AA													gtgttgagccagtgcttggtCcattttcctcaattttgttt							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	117432097	AA	AA	117432096	3	1	133	1	0	0	0	0	1	0	0	0	4079	855	30	3	3917	3	CTTNBP2	7	117432096	Missense_Mutation	DNP	CC	TCGA-49-4487-01A-21D-1855-08	283002	117432096	41706567	396	119306											
C7orf58	79974	broad.mit.edu	37	chr7	120906573	120906573	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctagcagtcgtcactgctCaactactcactgtacatcaa	6	13	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120906573	T	T	120906573	1	4	133	0	1	0	0	0	0	0	0	0	2430	841	29	4		4	C7orf58	7	120906573	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3474477	120906573	38232090	397	119307											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651876	121651876	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgttcttcagggcctgaaCcttcttatgccttgtctgat	8	12	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121651876	G	G	121651876	3	3	133	1	0	0	0	0	1	0	0	0	12922	507	18	4	2822	4	PTPRZ1	7	121651876	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	745303	121651876	37486787	398	119308											
CPA1	1357	broad.mit.edu	37	chr7	130027667	130027667	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttactcctgccccagatCaagccagtggaagcactatt	7	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130027667	G	G	130027667	3	3	133	1	0	0	0	0	1	0	0	0	3821	827	29	4	1113	4	CPA1	7	130027667	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	8375791	130027667	29110996	399	119309											
PLXNA4	91584	broad.mit.edu	37	chr7	131866447	131866447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagccccagtgcacataGtgggcctccctggatgtcat	10	15	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131866447	T	T	131866447	1	4	133	0	1	0	0	0	0	0	0	0	12217	1044	36	3		3	PLXNA4	7	131866447	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1838780	131866447	27272216	400	119310											
PLXNA4	91584	broad.mit.edu	37	chr7	132192544	132192544	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaggcggtactccaccccActgcgctcacagccaatggg	11	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132192544	T	T	132192544	3	4	133	1	0	0	0	0	1	0	0	0	12217	156	6	5	5213	5	PLXNA4	7	132192544	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	326097	132192544	26946119	401	119311											
EXOC4	60412	broad.mit.edu	37	chr7	133682312	133682312	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtcagagcagatcatgcaGactctcagtgaacttgccaa	10	10	3	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133682312	C	C	133682312	3	2	133	1	0	0	0	0	1	0	0	0	5348	933	33	4	2341	4	EXOC4	7	133682312	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1489768	133682312	25456351	402	119312											
TBXAS1	6916	broad.mit.edu	37	chr7	139636137	139636137	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaatgcaaactctcttctCttacggagcaggtttcttct	7	10	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139636137	A	A	139636137	1	1	133	0	1	0	0	0	0	0	0	0	15786	928	32	3		3	TBXAS1	7	139636137	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	5953825	139636137	19502526	403	119313											
WEE2	494551	broad.mit.edu	37	chr7	141408876	141408876	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggagcaagctgctgccCagtgacagcccctctactcc	10	16	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141408876	A	A	141408876	2	1	133	1	0	0	0	0	0	0	0	1	17472	581	21	2		2	WEE2	7	141408876	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1772739	141408876	17729787	404	119314											
MGAM	8972	broad.mit.edu	37	chr7	141784296	141784296	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctctgttctgaggactAatattttctgtctattttct	7	7	5	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141784296	T	T	141784296	1	4	133	0	1	0	0	0	0	0	0	0	9634	377	13	5		5	MGAM	7	141784296	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	375420	141784296	17354367	405	119315											
PRSS1	5644	broad.mit.edu	37	chr7	142458475	142458475	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggagaattctgtcccctAccaggtgtccctgaattctg	10	11	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142458475	G	G	142458475	3	3	133	1	0	0	0	0	1	0	0	0	12720	391	14	5	116	5	PRSS1	7	142458475	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	674179	142458475	16680188	406	119316											
OR2A2	442361	broad.mit.edu	37	chr7	143807463	143807463	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtttacatggtcccagactCtaatcaacgagaggagcagg	12	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143807463	G	G	143807463	3	3	133	1	0	0	0	0	1	0	0	0	11071	913	32	4	790	4	OR2A2	7	143807463	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1348988	143807463	15331200	407	119317											
CNTNAP2	26047	broad.mit.edu	37	chr7	146997225	146997225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgacttttatcttgtaCttaccaggttctgggttgaa	8	6	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146997225	A	A	146997225	1	1	133	0	1	0	0	0	0	0	0	0	3679	580	20	3		3	CNTNAP2	7	146997225	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3189762	146997225	12141438	408	119318											
TMEM176A	55365	broad.mit.edu	37	chr7	150501818	150501818	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggatcaggtaccatgctGctgattctggtagctccaga	11	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150501818	T	T	150501818	1	4	133	0	1	0	0	0	0	0	0	0	16215	1334	46	3		3	TMEM176A	7	150501818	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3504593	150501818	8636845	409	119319											
WDR86	349136	broad.mit.edu	37	chr7	151079074	151079074	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcccgtgaacactgcggAcacacagcgcgcgctgggcc	14	16	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151079074	G	G	151079074	1	3	133	0	1	0	0	0	0	0	0	0	17461	290	10	5		5	WDR86	7	151079074	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	577256	151079074	8059589	410	119320											
MLL3	58508	broad.mit.edu	37	chr7	151945170	151945170	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgaagaaggtgttggggaGgaagacacatctgccttgct	14	7	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151945170	C	C	151945170	2	2	133	1	0	0	0	0	0	0	0	1	9715	987	35	4		4	MLL3	7	151945170	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	866096	151945170	7193493	411	119321											
DPP6	1804	broad.mit.edu	37	chr7	154519680	154519680	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggttctttttcatttttcTttgactttaactgtaaatta	5	5	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154519680	A	A	154519680	1	1	133	0	1	0	0	0	0	0	0	0	4770	1624	56	5		5	DPP6	7	154519680	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	2574510	154519680	4618983	412	119322											
DPP6	1804	broad.mit.edu	37	chr7	154684566	154684566	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggaagcatgagacccgccCacactagcctctgtgttccc	10	16	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154684566	T	T	154684566	1	4	133	0	1	0	0	0	0	0	0	0	4770	609	21	4		4	DPP6	7	154684566	3'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	164886	154684566	4454097	413	119323											
PTPRN2	5799	broad.mit.edu	37	chr7	158334246	158334246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacacagaacatcttcataGtaggaaagctggcttcggtt	9	9	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158334246	A	A	158334246	1	1	133	0	1	0	0	0	0	0	0	0	12916	1044	36	4		4	PTPRN2	7	158334246	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3649680	158334246	804417	414	119324											
NCAPG2	54892	broad.mit.edu	37	chr7	158456862	158456862	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactatctgcccggcctggcCctgttctactcacagtcaca	7	17	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158456862	T	T	158456862	1	4	133	0	1	0	0	0	0	0	0	0	10303	638	22	4		4	NCAPG2	7	158456862	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	122616	158456862	681801	415	119325											
MYOM2	9172	broad.mit.edu	37	chr8	2088653	2088653	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcttttcaagagatgctAagatctcatccagtgagcat	8	9	3	3	rs76960308	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2088653	T	T	2088653	4	4	133	1	0	0	0	0	0	1	0	0	10186	363	13	5	3934	5	MYOM2	8	2088653	Nonsense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08		2088653	144275369	416	119326											
DEFA4	1669	broad.mit.edu	37	chr8	6794243	6794243	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagcttttttatgctggcctCtctcacctgaaacctgaaga	7	11	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6794243	G	G	6794243	1	3	133	0	1	0	0	0	0	0	0	0	4424	928	32	4		4	DEFA4	8	6794243	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4705590	6794243	139569779	417	119327											
RP1L1	94137	broad.mit.edu	37	chr8	10467736	10467736	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcactgtgttttcagctaacTgctccaggttcgagctcgcc	10	13	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10467736	A	A	10467736	3	1	133	1	0	0	0	0	1	0	0	0	13644	1580	55	5	3334	5	RP1L1	8	10467736	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	3673493	10467736	135896286	418	119328											
BIN3	55909	broad.mit.edu	37	chr8	22494503	22494503	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagagagataactcaattatCggagaaatgacaacacggtg	11	6	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22494503	T	T	22494503	1	4	133	0	1	0	0	0	0	0	0	0	1440	899	31	4		4	BIN3	8	22494503	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	12026767	22494503	123869519	419	119329											
TRIM35	23087	broad.mit.edu	37	chr8	27147573	27147573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatgtgtgctggtgcacCcagctggttgttacctgctt	12	11	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27147573	A	A	27147573	1	1	133	0	1	0	0	0	0	0	0	0	16633	638	22	2		2	TRIM35	8	27147573	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4653070	27147573	119216449	420	119330											
TEX15	56154	broad.mit.edu	37	chr8	30705192	30705192	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgatcctgacccctatcttCaacataagcagtttctttat	5	11	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30705192	T	T	30705192	3	4	133	1	0	0	0	0	1	0	0	0	15901	835	29	4	7043	4	TEX15	8	30705192	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3557619	30705192	115658830	421	119331											
KCNU1	157855	broad.mit.edu	37	chr8	36693935	36693935	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccttttatctatatagctaGacgaactttttaattttcta	3	7	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36693935	A	A	36693935	1	1	133	0	1	0	0	0	0	0	0	0	8163	957	33	4		4	KCNU1	8	36693935	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	5988743	36693935	109670087	422	119332											
DDHD2	23259	broad.mit.edu	37	chr8	38110567	38110567	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaagtcttttaccagagctCcataccctgccttacaagct	7	13	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38110567	G	G	38110567	3	3	133	1	0	0	0	0	1	0	0	0	4360	855	30	4	1929	4	DDHD2	8	38110567	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1416632	38110567	108253455	423	119333											
ADAM32	203102	broad.mit.edu	37	chr8	39089468	39089468	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattaatggagagataaagGgaatattatatgaagaaatg	10	0	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39089468	T	T	39089468	1	4	133	0	1	0	0	0	0	0	0	0	249	1247	43	2		2	ADAM32	8	39089468	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	978901	39089468	107274554	424	119334											
CYP7A1	1581	broad.mit.edu	37	chr8	59409192	59409192	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaataaactccagaaagtCgctggaatggtgtttgcttg	11	6	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59409192	A	A	59409192	2	1	133	1	0	0	0	0	0	0	0	1	4229	871	31	3		3	CYP7A1	8	59409192	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	20319724	59409192	86954830	425	119335											
ASPH	444	broad.mit.edu	37	chr8	62430585	62430585	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccccagcacgacactctTggtacctgtcctcttctgca	6	17	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62430585	C	C	62430585	1	2	133	0	1	0	0	0	0	0	0	0	1057	1827	63	5		5	ASPH	8	62430585	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	3021393	62430585	83933437	426	119336											
NKAIN3	286183	broad.mit.edu	37	chr8	63777333	63777333	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgaatcccctggatacAcggaatgcagataaaattag	9	7	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63777333	C	C	63777333	1	2	133	0	1	0	0	0	0	0	0	0	10532	174	6	5		5	NKAIN3	8	63777333	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	1346748	63777333	82586689	427	119337											
COPS5	10987	broad.mit.edu	37	chr8	67970272	67970272	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagtatacttgcttcagCaaatcttcataaagaactta	4	9	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67970272	A	A	67970272	1	1	133	0	1	0	0	0	0	0	0	0	3768	725	25	3		3	COPS5	8	67970272	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4192939	67970272	78393750	428	119338											
PREX2	80243	broad.mit.edu	37	chr8	68992817	68992817	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgttatagctaagtcattAttggtaagtttattgatatg	8	2	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68992817	G	G	68992817	2	3	133	1	0	0	0	0	0	0	0	1	12583	446	16	5		5	PREX2	8	68992817	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	1022545	68992817	77371205	429	119339											
KCNS2	3788	broad.mit.edu	37	chr8	99440470	99440470	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatttctatcacaccgGcaagcttcacgtcatggctg	9	13	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99440470	A	A	99440470	3	1	133	1	0	0	0	0	1	0	0	0	8159	1203	42	4	265	4	KCNS2	8	99440470	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	30447653	99440470	46923552	430	119340											
VPS13B	157680	broad.mit.edu	37	chr8	100479783	100479783	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaaaaactgcttgctacggGacctgatacacgacattcat	7	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100479783	A	A	100479783	3	1	133	1	0	0	0	0	1	0	0	0	17317	1174	41	4	3800	4	VPS13B	8	100479783	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1039313	100479783	45884239	431	119341											
VPS13B	157680	broad.mit.edu	37	chr8	100479871	100479871	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaatccccaggttggtacAtttgatttatgaaaggaaat	8	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100479871	T	T	100479871	1	4	133	0	1	0	0	0	0	0	0	0	17317	232	8	5		5	VPS13B	8	100479871	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	88	100479871	45884151	432	119342											
RIMS2	9699	broad.mit.edu	37	chr8	105105906	105105906	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaacaaacttctctaaataTgttttagaaggtctttatgt	5	6	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105105906	A	A	105105906	1	1	133	0	1	0	0	0	0	0	0	0	13479	1479	51	5		5	RIMS2	8	105105906	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	4626035	105105906	41258116	433	119343											
ZFPM2	23414	broad.mit.edu	37	chr8	106811100	106811100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcccatcagatttccagCctgtgccccttcccacagtg	8	16	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106811100	A	A	106811100	3	1	133	1	0	0	0	0	1	0	0	0	17784	738	26	3	914	3	ZFPM2	8	106811100	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1705194	106811100	39552922	434	119344											
KCNV1	27012	broad.mit.edu	37	chr8	110984922	110984922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagtgggacaaggtccttGggagaagtcctgttcactct	12	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110984922	T	T	110984922	3	4	133	1	0	0	0	0	1	0	0	0	8164	1357	47	2	954	2	KCNV1	8	110984922	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4173822	110984922	35379100	435	119345											
CSMD3	114788	broad.mit.edu	37	chr8	113348905	113348905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaatgaaatcatatattGgttctgtttgaaggacagta	9	4	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113348905	T	T	113348905	3	4	133	1	0	0	0	0	1	0	0	0	3980	1348	47	2	4240	2	CSMD3	8	113348905	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2363983	113348905	33015117	436	119346											
CSMD3	114788	broad.mit.edu	37	chr8	113599546	113599546	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcatgtatggaagtgttaTgcattttattttacctaaag	7	4	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113599546	A	A	113599546	1	1	133	0	1	0	0	0	0	0	0	0	3980	1479	51	5		5	CSMD3	8	113599546	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	250641	113599546	32764476	437	119347											
ATAD2	29028	broad.mit.edu	37	chr8	124373909	124373909	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaaaaaacaaaattgaAatcatgataaggaagggcag	9	3	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124373909	T	T	124373909	1	4	133	0	1	0	0	0	0	0	0	0	1075	29	1	5		5	ATAD2	8	124373909	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	10774363	124373909	21990113	438	119348											
ANXA13	312	broad.mit.edu	37	chr8	124724986	124724986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaccctgaggactgctcGctttagcctggagaaaataa	9	10	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124724986	T	T	124724986	3	4	133	1	0	0	0	0	1	0	0	0	717	1087	38	3	967	3	ANXA13	8	124724986	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	351077	124724986	21639036	439	119349											
GSDMC	56169	broad.mit.edu	37	chr8	130777851	130777851	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatttttttgaatttcaatCccacttcaggacaactttat	4	8	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130777851	A	A	130777851	1	1	133	0	1	0	0	0	0	0	0	0	6884	870	30	3		3	GSDMC	8	130777851	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	6052865	130777851	15586171	440	119350											
COL22A1	169044	broad.mit.edu	37	chr8	139790736	139790736	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcagccagtcccacgtttgGtgacaagagctgctagctca	10	13	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139790736	C	C	139790736	1	2	133	0	1	0	0	0	0	0	0	0	3713	1276	44	4		4	COL22A1	8	139790736	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	9012885	139790736	6573286	441	119351											
RHPN1	114822	broad.mit.edu	37	chr8	144464814	144464814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccttgaagcacccagggtGgccgtgagggccaggatccc	14	13	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144464814	T	T	144464814	3	4	133	1	0	0	0	0	1	0	0	0	13459	1357	47	2	2064	2	RHPN1	8	144464814	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4674078	144464814	1899208	442	119352											
JAK2	3717	broad.mit.edu	37	chr9	5029787	5029787	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgcttcttttctaggtatCacacctgtgtatcataatat	5	9	5	0	rs139093384	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5029787	T	T	5029787	2	4	133	1	0	0	0	0	0	0	0	1	8008	816	29	4		4	JAK2	9	5029787	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08		5029787	136183644	443	119353											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5534886	5534886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaaggtggaaaatgataCatccccacaccgtgaaagag	10	9	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5534886	A	A	5534886	3	1	133	1	0	0	0	0	1	0	0	0	11712	478	17	3	203	3	PDCD1LG2	9	5534886	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	505099	5534886	135678545	444	119354											
TYRP1	7306	broad.mit.edu	37	chr9	12693928	12693928	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagctggattttcctctacGtgcttcagtcttctctacac	6	13	5	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12693928	C	C	12693928	1	2	133	0	1	0	0	0	0	0	0	0	16942	1160	40	4		4	TYRP1	9	12693928	5'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	7159042	12693928	128519503	445	119355											
SLC24A2	25769	broad.mit.edu	37	chr9	19520789	19520789	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactctgtattggtattggTtagtcttaggttcagagatc	10	5	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19520789	G	G	19520789	1	3	133	0	1	0	0	0	0	0	0	0	14580	1740	60	5		5	SLC24A2	9	19520789	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	6826861	19520789	121692642	446	119356											
TAF1L	138474	broad.mit.edu	37	chr9	32635604	32635604	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaataaaacaacagtcgccCggaagtgatctacttagctc	8	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32635604	A	A	32635604	1	1	133	0	1	0	0	0	0	0	0	0	15642	667	23	1		1	TAF1L	9	32635604	5'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	13114815	32635604	108577827	447	119357											
ZNF658	26149	broad.mit.edu	37	chr9	40774879	40774879	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttacaggatattttttcTgaaagctctggagctatttc	7	7	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40774879	A	A	40774879	2	1	133	1	0	0	0	0	0	0	0	1	18196	1567	55	5		5	ZNF658	9	40774879	Silent	SNP	T	TCGA-49-4487-01A-21D-1855-08	8139275	40774879	100438552	448	119358											
FAM75A6	389730	broad.mit.edu	37	chr9	43625471	43625471	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttgctccttctggctgcCatgaggtcatgtagctcctg	11	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43625471	T	T	43625471	3	4	133	1	0	0	0	0	1	0	0	0	5674	594	21	4	819	4	FAM75A6	9	43625471	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2850592	43625471	97587960	449	119359											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69390954	69390954	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagcaccctagatgcttataGacccaagctagtacatgcaa	8	11	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69390954	C	C	69390954	1	2	133	0	1	0	0	0	0	0	0	0	650	957	33	4		4	ANKRD20A4	9	69390954	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	25765483	69390954	71822477	450	119360											
PIP5K1B	8395	broad.mit.edu	37	chr9	71605890	71605890	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctgggctaaacccaaactCtttaaactcaagtgaccatg	7	12	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71605890	G	G	71605890	1	3	133	0	1	0	0	0	0	0	0	0	12035	928	32	4		4	PIP5K1B	9	71605890	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2214936	71605890	69607541	451	119361											
C9orf95	54981	broad.mit.edu	37	chr9	77692296	77692296	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattgcactgagcctaattTcaatacaaaacgtaaatctc	4	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77692296	A	A	77692296	1	1	133	0	1	0	0	0	0	0	0	0	2533	1798	62	5		5	C9orf95	9	77692296	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	6086406	77692296	63521135	452	119362											
TLE1	7088	broad.mit.edu	37	chr9	84205676	84205676	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagaggtgataggcccagcTgctaaagaagcgaacccctc	12	12	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84205676	A	A	84205676	1	1	133	0	1	0	0	0	0	0	0	0	16061	1595	55	5		5	TLE1	9	84205676	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	6513380	84205676	57007755	453	119363											
ZCCHC6	79670	broad.mit.edu	37	chr9	88967669	88967669	+	Missense_Mutation	SNP	C	T	T													gaaacagtcgtcttacagttCtgcagcctcttgtgtcttgc							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88967669	T	T	88967669	3	4	133	1	0	0	0	0	1	0	0	0	17718	913	32	4	4145	4	ZCCHC6	9	88967669	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	4761993	88967669	52245762	454	119364	518	2									
ZCCHC6	79670	broad.mit.edu	37	chr9	88967678	88967678	+	Missense_Mutation	SNP	C	T	T													gtcttacagttctgcagcctCttgtgtcttgccacctataa							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88967678	T	T	88967678	3	4	133	1	0	0	0	0	1	0	0	0	17718	913	32	4	4154	4	ZCCHC6	9	88967678	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	9	88967678	52245753	455	119365	518	2									
IARS	3376	broad.mit.edu	37	chr9	94985761	94985761	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactcagtaagtcagtttgGttttgtatttctaaaaataa	7	4	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94985761	A	A	94985761	2	1	133	1	0	0	0	0	0	0	0	1	7543	1252	44	4		4	IARS	9	94985761	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	6018083	94985761	46227670	456	119366											
PTPDC1	138639	broad.mit.edu	37	chr9	96863802	96863802	+	Intron	SNP	C	A	A													ggtgcacctccctctcctctCcctgtctctgtctctgtctg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96863802	A	A	96863802	1	1	133	0	1	0	0	0	0	0	0	0	12879	870	30	3		3	PTPDC1	9	96863802	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1878041	96863802	44349629	457	119367	519	2									
PTPDC1	138639	broad.mit.edu	37	chr9	96863808	96863808	+	Intron	SNP	C	G	G													cctccctctcctctccctgtCtctgtctctgtctgtctgtc							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96863808	G	G	96863808	1	3	133	0	1	0	0	0	0	0	0	0	12879	928	32	4		4	PTPDC1	9	96863808	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	6	96863808	44349623	458	119368	519	2									
PTPDC1	138639	broad.mit.edu	37	chr9	96863839	96863839	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgtctgtctctttctcttCctttttagaaagagcttaat	5	9	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96863839	A	A	96863839	1	1	133	0	1	0	0	0	0	0	0	0	12879	870	30	3		3	PTPDC1	9	96863839	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	31	96863839	44349592	459	119369											
CORO2A	7464	broad.mit.edu	37	chr9	100893276	100893276	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgctggtgtccgcgtcataGaagggaaacagcacgcccga	13	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100893276	A	A	100893276	2	1	133	1	0	0	0	0	0	0	0	1	3788	933	33	4		4	CORO2A	9	100893276	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	4029437	100893276	40320155	460	119370											
COL15A1	1306	broad.mit.edu	37	chr9	101759435	101759435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtccagccggggccatGtatgtaacatacagaatctc	10	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101759435	T	T	101759435	1	4	133	0	1	0	0	0	0	0	0	0	3704	1392	48	3		3	COL15A1	9	101759435	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	866159	101759435	39453996	461	119371											
C9orf30	91283	broad.mit.edu	37	chr9	103213257	103213257	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcgccctaagactttggGggtggctctcttgtaattaa	10	8	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103213257	T	T	103213257	1	4	133	0	1	0	0	0	0	0	0	0	2504	1247	43	2		2	C9orf30	9	103213257	3'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	1453822	103213257	38000174	462	119372											
GRIN3A	116443	broad.mit.edu	37	chr9	104449572	104449572	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctttcttatgaggcttaatCctttaatttcactgtgatac	6	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104449572	A	A	104449572	1	1	133	0	1	0	0	0	0	0	0	0	6849	870	30	3		3	GRIN3A	9	104449572	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1236315	104449572	36763859	463	119373											
PTPN3	5774	broad.mit.edu	37	chr9	112166750	112166750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaactggatcagcaccgtcCcgctttcgaggcccttcttt	8	15	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112166750	A	A	112166750	3	1	133	1	0	0	0	0	1	0	0	0	12897	623	22	2	842	2	PTPN3	9	112166750	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	7717178	112166750	29046681	464	119374											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112900009	112900009	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatccaatgatttcagcatgGacaacatcagtgacagcggg	10	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112900009	A	A	112900009	3	1	133	1	0	0	0	0	1	0	0	0	11504	1174	41	4	2215	4	PALM2-AKAP2	9	112900009	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	733259	112900009	28313422	465	119375											
SVEP1	79987	broad.mit.edu	37	chr9	113194251	113194251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacatgaacatatgtaggatCcatctacgttcaggcaagaa	8	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113194251	A	A	113194251	3	1	133	1	0	0	0	0	1	0	0	0	15538	855	30	3	5486	3	SVEP1	9	113194251	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	294242	113194251	28019180	466	119376											
ZNF483	158399	broad.mit.edu	37	chr9	114289741	114289741	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacctcaaactctggcctcGactgaacaaaatgaggtccc	8	13	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114289741	T	T	114289741	2	4	133	1	0	0	0	0	0	0	0	1	18063	1045	37	3		3	ZNF483	9	114289741	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	1095490	114289741	26923690	467	119377											
PRPF4	9128	broad.mit.edu	37	chr9	116052669	116052669	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattaataacttaagctataAtggcttagaatactttatgt	5	5	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116052669	G	G	116052669	1	3	133	0	1	0	0	0	0	0	0	0	12676	116	4	5		5	PRPF4	9	116052669	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	1762928	116052669	25160762	468	119378											
RNF183	138065	broad.mit.edu	37	chr9	116060272	116060272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaggctgccctgaggccaGcactgtgggctggcgacaga	16	12	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116060272	T	T	116060272	3	4	133	1	0	0	0	0	1	0	0	0	13578	962	34	3	389	3	RNF183	9	116060272	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	7603	116060272	25153159	469	119379											
ZNF618	114991	broad.mit.edu	37	chr9	116770607	116770607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttctgcggctgccgcCtcctgcccgggcgcagtgtt	12	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116770607	A	A	116770607	1	1	133	0	1	0	0	0	0	0	0	0	18169	696	24	2		2	ZNF618	9	116770607	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	710335	116770607	24442824	470	119380											
ASTN2	23245	broad.mit.edu	37	chr9	119858343	119858343	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttgctgcggcggcgactgCggtactgctccgtgtagaat	14	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119858343	G	G	119858343	3	3	133	1	0	0	0	0	1	0	0	0	1069	768	27	4	3071	4	ASTN2	9	119858343	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3087736	119858343	21355088	471	119381											
DBC1	1620	broad.mit.edu	37	chr9	122075514	122075514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccctgtctgaaatgagCcaatcaaattccttggagac	9	12	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122075514	A	A	122075514	3	1	133	1	0	0	0	0	1	0	0	0	4280	740	26	3	2193	3	DBC1	9	122075514	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2217171	122075514	19137917	472	119382											
GOLGA2	2801	broad.mit.edu	37	chr9	131019541	131019541	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaggctccacactgccggcGaggctcacctcgcaaagatc	11	16	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131019541	A	A	131019541	2	1	133	1	0	0	0	0	0	0	0	1	6616	1045	37	4		4	GOLGA2	9	131019541	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	8944027	131019541	10193890	473	119383											
C9orf119	375757	broad.mit.edu	37	chr9	131050954	131050954	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatccgaggtgtcaccaccAaagagttgtatccagagttt	10	9	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131050954	G	G	131050954	3	3	133	1	0	0	0	0	1	0	0	0	2478	131	5	5	685	5	C9orf119	9	131050954	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	31413	131050954	10162477	474	119384											
COQ4	51117	broad.mit.edu	37	chr9	131095742	131095742	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgttttctttttcctctgCtgccccacaggagcctgcaa	8	13	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131095742	G	G	131095742	1	3	133	0	1	0	0	0	0	0	0	0	3779	812	28	4		4	COQ4	9	131095742	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	44788	131095742	10117689	475	119385											
ODF2	4957	broad.mit.edu	37	chr9	131246279	131246279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgcgtgggcatttgcaGgcacagcttcggtccaaaga	12	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131246279	T	T	131246279	3	4	133	1	0	0	0	0	1	0	0	0	10922	991	35	2	1143	2	ODF2	9	131246279	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	150537	131246279	9967152	476	119386											
CCBL1	883	broad.mit.edu	37	chr9	131597812	131597812	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctgagggatgatgggCttcaggcccactgactgtag	14	11	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131597812	G	G	131597812	3	3	133	1	0	0	0	0	1	0	0	0	2758	796	28	4	294	4	CCBL1	9	131597812	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	351533	131597812	9615619	477	119387											
NUP188	23511	broad.mit.edu	37	chr9	131735483	131735483	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtctatggactgctctcTttcgttctgacctcgttgga	10	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131735483	C	C	131735483	2	2	133	1	0	0	0	0	0	0	0	1	10853	1596	56	5		5	NUP188	9	131735483	Silent	SNP	T	TCGA-49-4487-01A-21D-1855-08	137671	131735483	9477948	478	119388											
FAM73B	84895	broad.mit.edu	37	chr9	131825932	131825932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagggggtggggtggggGggcaaattataaaatgcaaa	18	3	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131825932	T	T	131825932	1	4	133	0	1	0	0	0	0	0	0	0	5669	1247	43	2		2	FAM73B	9	131825932	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	90449	131825932	9387499	479	119389											
LAMC3	10319	broad.mit.edu	37	chr9	133914126	133914126	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggcctgaactccattctgGaccatgctcttgcccttctc	8	15	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133914126	T	T	133914126	1	4	133	0	1	0	0	0	0	0	0	0	8688	1189	41	3		3	LAMC3	9	133914126	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2088194	133914126	7299305	480	119390											
NUP214	8021	broad.mit.edu	37	chr9	134073026	134073026	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcccccccggtgttagggaAgcacacggagccccctgtga	13	15	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134073026	T	T	134073026	3	4	133	1	0	0	0	0	1	0	0	0	10857	72	3	5	4259	5	NUP214	9	134073026	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	158900	134073026	7140405	481	119391											
TTF1	7270	broad.mit.edu	37	chr9	135266077	135266077	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagtttttcccgaacaattGataggcaactttcaggattt	8	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135266077	A	A	135266077	3	1	133	1	0	0	0	0	1	0	0	0	16844	1294	45	4	608	4	TTF1	9	135266077	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1193051	135266077	5947354	482	119392											
CEL	1056	broad.mit.edu	37	chr9	135942538	135942538	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcccagtgtctgaaggttActgatccccgagccctgacg	12	13	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135942538	T	T	135942538	3	4	133	1	0	0	0	0	1	0	0	0	3239	391	14	5	876	5	CEL	9	135942538	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	676461	135942538	5270893	483	119393											
COL5A1	1289	broad.mit.edu	37	chr9	137716553	137716554	+	Missense_Mutation	DNP	GG	TT	TT													gggaatggcgagaactacgtGgactacgcggacggcatgga							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	137716554	TT	TT	137716553	3	4	133	1	0	0	0	0	1	0	0	0	3728	1335	47	2	5052	2	COL5A1	9	137716553	Missense_Mutation	DNP	GG	TCGA-49-4487-01A-21D-1855-08	1774015	137716553	3496878	484	119394											
SEC16A	9919	broad.mit.edu	37	chr9	139360558	139360558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggcctcgtaggaaccggCagccacattgtggcttctgt	14	12	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139360558	A	A	139360558	3	1	133	1	0	0	0	0	1	0	0	0	14099	710	25	3	3014	3	SEC16A	9	139360558	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1644005	139360558	1852873	485	119395											
CACNA1B	774	broad.mit.edu	37	chr9	140968192	140968192	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcgtggttgtatgcattgtCctgttgtcatttataaagac	9	6	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140968192	T	T	140968192	1	4	133	0	1	0	0	0	0	0	0	0	2565	870	30	4		4	CACNA1B	9	140968192	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1607634	140968192	245239	486	119396											
TUBB8	347688	broad.mit.edu	37	chr10	93572	93573	+	Missense_Mutation	DNP	CC	AG	AG													aaacgggaccatgttcacggCcagcttccgcaggtcagcat							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	93573	AG	AG	93572	3	1	133	1	0	0	0	0	1	0	0	0	16887	739	26	3	578	3	TUBB8	10	93572	Missense_Mutation	DNP	CC	TCGA-49-4487-01A-21D-1855-08		93572	135441175	487	119397											
AKR1C2	1646	broad.mit.edu	37	chr10	5041214	5041214	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccccaattcttctcctccActtctctcttttgtatgcct	2	17	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5041214	T	T	5041214	1	4	133	0	1	0	0	0	0	0	0	0	470	174	6	5		5	AKR1C2	10	5041214	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	4947642	5041214	130493533	488	119398											
AKR1C4	1109	broad.mit.edu	37	chr10	5248376	5248376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggtgagcaccctcagcCtcctctcctttctcttctca	5	18	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5248376	A	A	5248376	1	1	133	0	1	0	0	0	0	0	0	0	472	696	24	2		2	AKR1C4	10	5248376	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	207162	5248376	130286371	489	119399											
GATA3	2625	broad.mit.edu	37	chr10	8105946	8105946	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtggcttatctgtgcttTtgtttccagaaggcagggag	13	6	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8105946	C	C	8105946	1	2	133	0	1	0	0	0	0	0	0	0	6317	1856	64	5		5	GATA3	10	8105946	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	2857570	8105946	127428801	490	119400											
FRMD4A	55691	broad.mit.edu	37	chr10	13712593	13712594	+	Intron	DEL	AC	-	-													gggcgtgtctgcttcctagaAcacacacacacgcacataca							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13712594	-	-	13712593	6	5	133	0	1	1	0	1	0	0	0	0	6111	58	2	0		0	FRMD4A	10	13712593	Intron	DEL	AC	TCGA-49-4487-01A-21D-1855-08	5606647	13712593	121822154	491	119401											
FAM107B	83641	broad.mit.edu	37	chr10	14816193	14816193	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgaaacattcgccacatGatcccaacgctcctccagct	6	16	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14816193	T	T	14816193	1	4	133	0	1	0	0	0	0	0	0	0	5436	1305	45	3		3	FAM107B	10	14816193	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1103600	14816193	120718554	492	119402											
NMT2	9397	broad.mit.edu	37	chr10	15183394	15183394	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgcacgagaaaccacacaGaggaaaaaataaaacagagc	8	9	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15183394	T	T	15183394	1	4	133	0	1	0	0	0	0	0	0	0	10599	957	33	3		3	NMT2	10	15183394	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	367201	15183394	120351353	493	119403											
MLLT10	8028	broad.mit.edu	37	chr10	21903708	21903708	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttatttgcttatatataCaggtactgtgattttagtat	6	3	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21903708	G	G	21903708	1	3	133	0	1	0	0	0	0	0	0	0	9719	493	17	4		4	MLLT10	10	21903708	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	6720314	21903708	113631039	494	119404											
ARMC3	219681	broad.mit.edu	37	chr10	23270395	23270395	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaatgtgtgagaattcagGcagcaaagattttttcaata	9	5	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23270395	T	T	23270395	3	4	133	1	0	0	0	0	1	0	0	0	956	1203	42	3	1073	3	ARMC3	10	23270395	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1366687	23270395	112264352	495	119405											
ENKUR	219670	broad.mit.edu	37	chr10	25284575	25284575	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaatataccacaaggctacCtttttattgatgtactttgg	6	7	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25284575	G	G	25284575	3	3	133	1	0	0	0	0	1	0	0	0	5162	695	24	4	339	4	ENKUR	10	25284575	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2014180	25284575	110250172	496	119406											
MYO3A	53904	broad.mit.edu	37	chr10	26434414	26434414	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatcacaatacttctggaGacccaaaagaatggaactta	7	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26434414	T	T	26434414	3	4	133	1	0	0	0	0	1	0	0	0	10170	942	33	3	2534	3	MYO3A	10	26434414	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1149839	26434414	109100333	497	119407											
MYO3A	53904	broad.mit.edu	37	chr10	26463396	26463396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctatcccacaaaacatgaGgaaatcaataacatcaagaa	4	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26463396	T	T	26463396	3	4	133	1	0	0	0	0	1	0	0	0	10170	991	35	2	4313	2	MYO3A	10	26463396	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	28982	26463396	109071351	498	119408											
ARMC4	55130	broad.mit.edu	37	chr10	28151320	28151320	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatcactacaccatgatatCtcaggacaatatgcatgtaa	5	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28151320	T	T	28151320	1	4	133	0	1	0	0	0	0	0	0	0	957	928	32	4		4	ARMC4	10	28151320	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1687924	28151320	107383427	499	119409											
LYZL1	84569	broad.mit.edu	37	chr10	29599235	29599235	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtggtccaaccaatggaaGgagaccttgtctatattctc	10	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599235	A	A	29599235	1	1	133	0	1	0	0	0	0	0	0	0	9219	1015	35	4		4	LYZL1	10	29599235	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1447915	29599235	105935512	500	119410											
CUL2	8453	broad.mit.edu	37	chr10	35338533	35338533	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccaaggctagtcactggctCtgcaattgtacactatttta	7	11	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35338533	A	A	35338533	1	1	133	0	1	0	0	0	0	0	0	0	4088	928	32	3		3	CUL2	10	35338533	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	5739298	35338533	100196214	501	119411											
ANKRD30A	91074	broad.mit.edu	37	chr10	37453988	37453988	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatttttagtagagaactgtGctcatgaatgtatctgtgat	9	4	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37453988	C	C	37453988	1	2	133	0	1	0	0	0	0	0	0	0	658	1334	46	4		4	ANKRD30A	10	37453988	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2115455	37453988	98080759	502	119412											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43650878	43650878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatgagtgagaagatgcGgtcactgcaagaaagaagga	14	4	1	6	rs150048164		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43650878	T	T	43650878	3	4	133	1	0	0	0	0	1	0	0	0	3973	1116	39	1	283	1	CSGALNACT2	10	43650878	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	6196890	43650878	91883869	503	119413											
GDF2	2658	broad.mit.edu	37	chr10	48414410	48414410	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgattttgacaggagacaTagagtcggagctcagctctg	13	8	2	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48414410	C	C	48414410	3	2	133	1	0	0	0	0	1	0	0	0	6378	1406	49	5	835	5	GDF2	10	48414410	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	4763532	48414410	87120337	504	119414											
ARHGAP22	58504	broad.mit.edu	37	chr10	49662077	49662077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctcgctgtggggttggGggagcgtggagccagtgcag	21	7	1	0	rs41311230		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49662077	T	T	49662077	1	4	133	0	1	0	0	0	0	0	0	0	874	1247	43	2		2	ARHGAP22	10	49662077	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1247667	49662077	85872670	505	119415											
CHAT	1103	broad.mit.edu	37	chr10	50854760	50854760	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaagagcacagccatgcCcccagcgagagagtgagtag	13	12	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50854760	T	T	50854760	1	4	133	0	1	0	0	0	0	0	0	0	3344	638	22	4		4	CHAT	10	50854760	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1192683	50854760	84679987	506	119416											
PARG	8505	broad.mit.edu	37	chr10	51532176	51532176	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaacatattccttcttctCtccatcaggccaaatcacgg	5	13	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51532176	T	T	51532176	1	4	133	0	1	0	0	0	0	0	0	0	11542	928	32	4		4	PARG	10	51532176	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	677416	51532176	84002571	507	119417											
ANK3	288	broad.mit.edu	37	chr10	61815745	61815745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatttgcttcaaatttgcCagcttctcctttgagatatg	6	10	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61815745	A	A	61815745	3	1	133	1	0	0	0	0	1	0	0	0	622	594	21	2	405	2	ANK3	10	61815745	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	10283569	61815745	73719002	508	119418											
DNA2	1763	broad.mit.edu	37	chr10	70231550	70231550	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccccctctccgctcacagCtccgccggcagctccgcctc	7	24	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70231550	G	G	70231550	3	3	133	1	0	0	0	0	1	0	0	0	4636	796	28	4	3194	4	DNA2	10	70231550	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	8415805	70231550	65303197	509	119419											
KIAA1274	27143	broad.mit.edu	37	chr10	72292490	72292490	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgaggacgacttgcatgtGacggaggaggtgtacaagcg	18	6	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72292490	C	C	72292490	2	2	133	1	0	0	0	0	0	0	0	1	8290	1277	45	4		4	KIAA1274	10	72292490	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2060940	72292490	63242257	510	119420											
PRF1	5551	broad.mit.edu	37	chr10	72360525	72360525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcacgtccacaccctccCcggccagccatgcaccaggc	9	20	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72360525	A	A	72360525	3	1	133	1	0	0	0	0	1	0	0	0	12584	623	22	2	1541	2	PRF1	10	72360525	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	68035	72360525	63174222	511	119421											
CDH23	64072	broad.mit.edu	37	chr10	73548714	73548714	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggattatgacttgcttctGatcttcctttctgatgagaa	8	8	3	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73548714	C	C	73548714	2	2	133	1	0	0	0	0	0	0	0	1	3138	1277	45	4		4	CDH23	10	73548714	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	1188189	73548714	61986033	512	119422											
CDH23	64072	broad.mit.edu	37	chr10	73548780	73548780	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcacctaccaggcagaggtGatggaaaactctcccgctgg	12	12	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73548780	A	A	73548780	2	1	133	1	0	0	0	0	0	0	0	1	3138	1277	45	4		4	CDH23	10	73548780	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	66	73548780	61985967	513	119423											
ANXA7	310	broad.mit.edu	37	chr10	75156236	75156236	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggataggttccttctttatCtagctacctagagtgagctt	9	8	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75156236	A	A	75156236	1	1	133	0	1	0	0	0	0	0	0	0	723	928	32	3		3	ANXA7	10	75156236	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1607456	75156236	60378511	514	119424											
HTR7	3363	broad.mit.edu	37	chr10	92502209	92502209	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttccacctctattttgcCttgtttatttcatctccatt	3	11	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92502209	A	A	92502209	1	1	133	0	1	0	0	0	0	0	0	0	7522	696	24	2		2	HTR7	10	92502209	3'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	17345973	92502209	43032538	515	119425											
IDE	3416	broad.mit.edu	37	chr10	94267435	94267435	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacatgtactggaaaaaagGggcacacttaaaaaccattc	7	9	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94267435	C	C	94267435	1	2	133	0	1	0	0	0	0	0	0	0	7563	1247	43	4		4	IDE	10	94267435	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1765226	94267435	41267312	516	119426											
PDE6C	5146	broad.mit.edu	37	chr10	95421882	95421882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaacagtgttgcagcaaCaacccattgtaagaccttga	9	9	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95421882	A	A	95421882	3	1	133	1	0	0	0	0	1	0	0	0	11741	479	17	3	2349	3	PDE6C	10	95421882	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1154447	95421882	40112865	517	119427											
CYP2C19	1557	broad.mit.edu	37	chr10	96612523	96612523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggagagggcctggcccGcatggagctgtttttattcc	15	9	0	1	rs138112316		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96612523	T	T	96612523	3	4	133	1	0	0	0	0	1	0	0	0	4199	1087	38	3	1359	3	CYP2C19	10	96612523	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1190641	96612523	38922224	518	119428											
MGEA5	10724	broad.mit.edu	37	chr10	103547259	103547259	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcagtacttcctgttcttCatggaaactcaacattattt	6	9	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103547259	T	T	103547259	3	4	133	1	0	0	0	0	1	0	0	0	9648	835	29	4	282	4	MGEA5	10	103547259	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	6934736	103547259	31987488	519	119429											
SORCS1	114815	broad.mit.edu	37	chr10	108366912	108366912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaaacgtctccttttcCaggggactcacctgctccag	9	14	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108366912	A	A	108366912	1	1	133	0	1	0	0	0	0	0	0	0	15044	609	21	2		2	SORCS1	10	108366912	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4819653	108366912	27167835	520	119430											
NRAP	4892	broad.mit.edu	37	chr10	115412813	115412813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atattcctgttggtcagaacCaatgtcagcatgagaactga	9	8	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115412813	T	T	115412813	1	4	133	0	1	0	0	0	0	0	0	0	10733	609	21	4		4	NRAP	10	115412813	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	7045901	115412813	20121934	521	119431											
PNLIP	5406	broad.mit.edu	37	chr10	118305676	118305677	+	Intron	DNP	TG	CT	CT													aaaacaaataaatgttgagcTgggagagattcacttttcaa							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	118305677	CT	CT	118305676	1	2	133	0	1	0	0	0	0	0	0	0	12244	1595	55	5		5	PNLIP	10	118305676	Intron	DNP	TG	TCGA-49-4487-01A-21D-1855-08	2892863	118305676	17229071	522	119432											
PNLIP	5406	broad.mit.edu	37	chr10	118314905	118314905	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttatgatttcagggtttGgaatgagccaagtcgtgggc	13	5	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118314905	T	T	118314905	4	4	133	1	0	0	0	0	0	1	0	0	12244	1349	47	2	723	2	PNLIP	10	118314905	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	9229	118314905	17219842	523	119433											
FAM45A	404636	broad.mit.edu	37	chr10	120889070	120889070	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaggtgagcaacagaccAgacctctatgatgtgtttgt	12	7	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120889070	C	C	120889070	2	2	133	1	0	0	0	0	0	0	0	1	5615	175	7	5		5	FAM45A	10	120889070	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	2574165	120889070	14645677	524	119434											
MKI67	4288	broad.mit.edu	37	chr10	129905011	129905011	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagactttcccttaggagttCtcagctgcctcttgctgcca	8	14	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129905011	G	G	129905011	3	3	133	1	0	0	0	0	1	0	0	0	9691	913	32	4	4689	4	MKI67	10	129905011	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	9015941	129905011	5629736	525	119435											
MKI67	4288	broad.mit.edu	37	chr10	129913540	129913540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagccttcacttttacCcagattcacagattctcttc	4	13	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129913540	A	A	129913540	3	1	133	1	0	0	0	0	1	0	0	0	9691	623	22	2	8674	2	MKI67	10	129913540	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	8529	129913540	5621207	526	119436											
JAKMIP3	282973	broad.mit.edu	37	chr10	133948583	133948583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagatgcccggcgcttccaGcttaaaatcgcggagttaag	11	10	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133948583	T	T	133948583	3	4	133	1	0	0	0	0	1	0	0	0	8012	962	34	3	902	3	JAKMIP3	10	133948583	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4035043	133948583	1586164	527	119437											
CYP2E1	1571	broad.mit.edu	37	chr10	135368948	135368948	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctcttccttcagcctggaCaggaagaggtaggatggggg	16	8	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135368948	G	G	135368948	1	3	133	0	1	0	0	0	0	0	0	0	4203	493	17	4		4	CYP2E1	10	135368948	3'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	1420365	135368948	165799	528	119438											
FRG2B	441581	broad.mit.edu	37	chr10	135440223	135440223	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaggagcagtggagatcGgggtcttcatttccctttcc	13	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135440223	T	T	135440223	2	4	133	1	0	0	0	0	0	0	0	1	6107	1103	39	1		1	FRG2B	10	135440223	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	71275	135440223	94524	529	119439											
MUC5B	727897	broad.mit.edu	37	chr11	1263496	1263496	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggacagagtggtttgacGtggacttcccaacctcaggg	14	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1263496	A	A	1263496	3	1	133	1	0	0	0	0	1	0	0	0	10073	1145	40	4	5517	4	MUC5B	11	1263496	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08		1263496	133743020	530	119440											
TNNI2	7136	broad.mit.edu	37	chr11	1861809	1861809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaggaggagagccgcCgtgaggcagagaagcagaac	18	7	0	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1861809	A	A	1861809	3	1	133	1	0	0	0	0	1	0	0	0	16450	652	23	1	138	1	TNNI2	11	1861809	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	598313	1861809	133144707	531	119441											
OR51G1	79324	broad.mit.edu	37	chr11	4944910	4944910	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtgcgaaggatgagggcGtatgagagaaagatgagcag	18	4	0	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4944910	T	T	4944910	4	4	133	1	0	0	0	0	0	1	0	0	11192	1140	40	3	307	3	OR51G1	11	4944910	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3083101	4944910	130061606	532	119442											
OR52E2	119678	broad.mit.edu	37	chr11	5080148	5080148	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccacatgtgctgagggacTtgagtcgggcttcatgagta	13	8	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5080148	A	A	5080148	3	1	133	1	0	0	0	0	1	0	0	0	11209	1609	56	5	270	5	OR52E2	11	5080148	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	135238	5080148	129926368	533	119443											
APBB1	322	broad.mit.edu	37	chr11	6423818	6423818	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttacttccccccagccCccagacatggggtcatgcag	9	17	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6423818	A	A	6423818	2	1	133	1	0	0	0	0	0	0	0	1	761	610	22	2		2	APBB1	11	6423818	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1343670	6423818	128582698	534	119444											
HPX	3263	broad.mit.edu	37	chr11	6458780	6458780	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttaccctggaagcagtagTagcggcccagccatctcagg	13	12	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6458780	C	C	6458780	3	2	133	1	0	0	0	0	1	0	0	0	7413	1638	57	5	815	5	HPX	11	6458780	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	34962	6458780	128547736	535	119445											
ZNF214	7761	broad.mit.edu	37	chr11	7022175	7022175	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacagatggagcattgacAgaggttttctccaggttgat	11	6	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7022175	G	G	7022175	3	3	133	1	0	0	0	0	1	0	0	0	17896	188	7	5	1085	5	ZNF214	11	7022175	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	563395	7022175	127984341	536	119446											
NLRP14	338323	broad.mit.edu	37	chr11	7065314	7065314	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgaggtcccagagctgaGataaccctctggagttgtcc	12	11	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7065314	C	C	7065314	1	2	133	0	1	0	0	0	0	0	0	0	10571	957	33	4		4	NLRP14	11	7065314	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	43139	7065314	127941202	537	119447											
PLEKHA7	144100	broad.mit.edu	37	chr11	16838765	16838765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcggggaggtggcgaggagCcccccgaggggtgtcgggtg	22	9	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16838765	A	A	16838765	3	1	133	1	0	0	0	0	1	0	0	0	12156	739	26	3	1969	3	PLEKHA7	11	16838765	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	9773451	16838765	118167751	538	119448											
SAA2	6289	broad.mit.edu	37	chr11	18269519	18269519	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttcggctgctgacactcaGgaccaaggagcagaaaacca	11	12	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18269519	C	C	18269519	3	2	133	1	0	0	0	0	1	0	0	0	13910	991	35	4	366	4	SAA2	11	18269519	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1430754	18269519	116736997	539	119449											
PTPN5	84867	broad.mit.edu	37	chr11	18771101	18771102	+	Intron	DNP	CC	AA	AA													tgcagattttgtgcctggtcCccagctgatgaagcctcaaa							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18771102	AA	AA	18771101	1	1	133	0	1	0	0	0	0	0	0	0	12899	638	22	2		2	PTPN5	11	18771101	Intron	DNP	CC	TCGA-49-4487-01A-21D-1855-08	501582	18771101	116235415	540	119450											
LUZP2	338645	broad.mit.edu	37	chr11	24750622	24750622	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taattgaggttttaacttctCtagatttcactgaaactgtg	7	6	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24750622	A	A	24750622	1	1	133	0	1	0	0	0	0	0	0	0	9174	928	32	3		3	LUZP2	11	24750622	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	5979521	24750622	110255894	541	119451											
DCDC1	341019	broad.mit.edu	37	chr11	31329387	31329387	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcacgagtctgttggggCcaaactgagactgcaaataa	11	8	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31329387	A	A	31329387	3	1	133	1	0	0	0	0	1	0	0	0	4317	739	26	3	855	3	DCDC1	11	31329387	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	6578765	31329387	103677129	542	119452											
WT1	7490	broad.mit.edu	37	chr11	32450106	32450106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggttggggaactgcgccgCatggtgcgagggcgtgtgac	20	8	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32450106	A	A	32450106	3	1	133	1	0	0	0	0	1	0	0	0	17535	710	25	3	883	3	WT1	11	32450106	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1120719	32450106	102556410	543	119453											
CHST1	8534	broad.mit.edu	37	chr11	45671151	45671151	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgaagatgaggtgggagaggGaggggttaataaggcaacag	19	3	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45671151	A	A	45671151	1	1	133	0	1	0	0	0	0	0	0	0	3428	1189	41	4		4	CHST1	11	45671151	3'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	13221045	45671151	89335365	544	119454											
ARHGAP1	392	broad.mit.edu	37	chr11	46702649	46702649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatagaagatcttctgccCgaacttgaagctgttggtgg	11	9	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46702649	A	A	46702649	3	1	133	1	0	0	0	0	1	0	0	0	863	652	23	1	800	1	ARHGAP1	11	46702649	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1031498	46702649	88303867	545	119455											
CKAP5	9793	broad.mit.edu	37	chr11	46806337	46806337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggacagctggaaacacaaCtaaagtaaaatcaggatttt	9	6	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46806337	A	A	46806337	1	1	133	0	1	0	0	0	0	0	0	0	3476	580	20	3		3	CKAP5	11	46806337	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	103688	46806337	88200179	546	119456											
OR4C13	283092	broad.mit.edu	37	chr11	49974366	49974366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaagcccttgcactataCcaccgtcatgaagcagcatg	8	14	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49974366	A	A	49974366	3	1	133	1	0	0	0	0	1	0	0	0	11141	507	18	3	394	3	OR4C13	11	49974366	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3168029	49974366	85032150	547	119457											
TRIM48	79097	broad.mit.edu	37	chr11	55037996	55037996	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttgtattggatgtgacCgtcaaaatccgccccatatc	8	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55037996	A	A	55037996	1	1	133	0	1	0	0	0	0	0	0	0	16648	667	23	1		1	TRIM48	11	55037996	3'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	5063630	55037996	79968520	548	119458											
OR4C16	219428	broad.mit.edu	37	chr11	55340043	55340043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttgatggctgtggcctGggtgggatcctgtgtgcatt	16	6	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55340043	T	T	55340043	3	4	133	1	0	0	0	0	1	0	0	0	11143	1357	47	2	442	2	OR4C16	11	55340043	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	302047	55340043	79666473	549	119459											
OR5J2	282775	broad.mit.edu	37	chr11	55944982	55944982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtttgagaaacaaggacGtaaaggaggcagtgaaaagg	14	4	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55944982	T	T	55944982	3	4	133	1	0	0	0	0	1	0	0	0	11259	1145	40	3	891	3	OR5J2	11	55944982	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	604939	55944982	79061534	550	119460											
LRRC55	219527	broad.mit.edu	37	chr11	56954605	56954605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtagaattcttggcacatGgaagaacttcaatgaatgtc	9	6	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56954605	T	T	56954605	1	4	133	0	1	0	0	0	0	0	0	0	9098	1363	47	2		2	LRRC55	11	56954605	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1009623	56954605	78051911	551	119461											
SMTNL1	219537	broad.mit.edu	37	chr11	57313402	57313402	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccccctgagtccccttcCtcaggggagaagaaggagaa	12	12	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57313402	A	A	57313402	2	1	133	1	0	0	0	0	0	0	0	1	14929	668	24	2		2	SMTNL1	11	57313402	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	358797	57313402	77693114	552	119462											
SERPING1	710	broad.mit.edu	37	chr11	57367632	57367640	+	In_Frame_Del	DEL	CAGATTCTC	-	-													accaactacccagctcccaaCagattctcctacccagccca							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57367640	-	-	57367632	7	5	133	1	0	1	0	1	0	0	0	0	14229	478	17	0	338	0	SERPING1	11	57367632	In_Frame_Del	DEL	CAGATTCTC	TCGA-49-4487-01A-21D-1855-08	54230	57367632	77638884	553	119463											
CTNND1	1500	broad.mit.edu	37	chr11	57564429	57564429	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gattatggcactgcccgtcgGactgggacaccctctgaccc	11	15	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57564429	T	T	57564429	2	4	133	1	0	0	0	0	0	0	0	1	4053	1161	41	3		3	CTNND1	11	57564429	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	196797	57564429	77442087	554	119464											
OR5AN1	390195	broad.mit.edu	37	chr11	59132182	59132182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacagtccccaagatgctctCcaacctcttacaggaacagc	6	16	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59132182	A	A	59132182	3	1	133	1	0	0	0	0	1	0	0	0	11237	855	30	3	253	3	OR5AN1	11	59132182	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1567753	59132182	75874334	555	119465											
EEF1G	1937	broad.mit.edu	37	chr11	62340229	62340229	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggtctatgggagaaagaGagggacaaaattaatgagta	14	3	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62340229	C	C	62340229	1	2	133	0	1	0	0	0	0	0	0	0	4968	957	33	4		4	EEF1G	11	62340229	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3208047	62340229	72666287	556	119466											
ATG2A	23130	broad.mit.edu	37	chr11	64665151	64665151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgccccacttaccacctggtCcatcgtgacgtgcttgccat	8	17	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64665151	A	A	64665151	3	1	133	1	0	0	0	0	1	0	0	0	1097	855	30	3	781	3	ATG2A	11	64665151	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2324922	64665151	70341365	557	119467											
SPDYC	387778	broad.mit.edu	37	chr11	64939753	64939753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctggtctacttccagcgcGcccacctgaagctcagcgag	11	15	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64939753	A	A	64939753	3	1	133	1	0	0	0	0	1	0	0	0	15144	1087	38	4	309	4	SPDYC	11	64939753	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	274602	64939753	70066763	558	119468											
CTSF	8722	broad.mit.edu	37	chr11	66335003	66335003	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttttgggacagagaagaaAtcatggctgagccctgagtg	15	6	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66335003	G	G	66335003	3	3	133	1	0	0	0	0	1	0	0	0	4068	101	4	5	1055	5	CTSF	11	66335003	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	1395250	66335003	68671513	559	119469											
PRKRIR	5612	broad.mit.edu	37	chr11	76062549	76062549	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcccagggagtttcatttGaatatcaagtttggttgcca	9	7	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76062549	C	C	76062549	3	2	133	1	0	0	0	0	1	0	0	0	12632	1299	45	4	644	4	PRKRIR	11	76062549	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	9727546	76062549	58943967	560	119470											
USP35	57558	broad.mit.edu	37	chr11	77921493	77921493	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggagagtggtcactactaCtgctatgcccgtgagggcgc	14	11	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77921493	T	T	77921493	2	4	133	1	0	0	0	0	0	0	0	1	17193	576	20	4		4	USP35	11	77921493	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1858944	77921493	57085023	561	119471											
ODZ4	26011	broad.mit.edu	37	chr11	78381548	78381548	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagaggcggtcattcttgtCgaactcaaagatatactgcc	10	9	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78381548	T	T	78381548	3	4	133	1	0	0	0	0	1	0	0	0	10932	884	31	4	2479	4	ODZ4	11	78381548	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	460055	78381548	56624968	562	119472											
ANKRD42	338699	broad.mit.edu	37	chr11	82917013	82917013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctcattcactacagtctGctattttatgataacagacc	4	11	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82917013	T	T	82917013	1	4	133	0	1	0	0	0	0	0	0	0	670	1334	46	3		3	ANKRD42	11	82917013	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	4535465	82917013	52089503	563	119473											
TRIM49	57093	broad.mit.edu	37	chr11	89531684	89531684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcaagaaaacttctagGtgttgcagtgaaatagggta	11	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89531684	T	T	89531684	3	4	133	1	0	0	0	0	1	0	0	0	16649	1261	44	3	389	3	TRIM49	11	89531684	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	6614671	89531684	45474832	564	119474											
DDI1	414301	broad.mit.edu	37	chr11	103908282	103908282	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttggacaagtgacgatgctCtacattaactgcaaagtgaa	9	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103908282	G	G	103908282	2	3	133	1	0	0	0	0	0	0	0	1	4361	900	32	4		4	DDI1	11	103908282	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	14376598	103908282	31098234	565	119475											
ELMOD1	55531	broad.mit.edu	37	chr11	107535729	107535729	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttttctcctgcattcttAtcattgtattgtctccaaca	3	10	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107535729	T	T	107535729	1	4	133	0	1	0	0	0	0	0	0	0	5110	464	16	5		5	ELMOD1	11	107535729	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	3627447	107535729	27470787	566	119476											
C11orf1	64776	broad.mit.edu	37	chr11	111750182	111750182	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggggtgaggcgagttctGggtgaaagaaacggggcggg	23	4	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111750182	T	T	111750182	1	4	133	0	1	0	0	0	0	0	0	0	1640	1363	47	2		2	C11orf1	11	111750182	5'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	4214453	111750182	23256334	567	119477											
APOC3	345	broad.mit.edu	37	chr11	116701581	116701581	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggatgcactgagcagcGtgcaggagtcccaggtggcc	15	12	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116701581	C	C	116701581	3	2	133	1	0	0	0	0	1	0	0	0	801	1145	40	4	154	4	APOC3	11	116701581	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4951399	116701581	18304935	568	119478											
CEP164	22897	broad.mit.edu	37	chr11	117279605	117279605	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctgactttaccccacaGgcctcagatgagggcactct	9	14	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117279605	T	T	117279605	5	4	133	1	0	0	0	0	0	0	1	0	3279	1014	35	2	3715	2	CEP164	11	117279605	Splice_Site	SNP	G	TCGA-49-4487-01A-21D-1855-08	578024	117279605	17726911	569	119479											
MLL	4297	broad.mit.edu	37	chr11	118370256	118370256	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgtaatcccagcacttTgggaggctgaggcgggcaga	15	11	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118370256	C	C	118370256	1	2	133	0	1	0	0	0	0	0	0	0	9713	1827	63	5		5	MLL	11	118370256	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	1090651	118370256	16636260	570	119480											
HYOU1	10525	broad.mit.edu	37	chr11	118926190	118926190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaccactctgggaagagGgactgctagctcaccatgct	11	14	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118926190	T	T	118926190	1	4	133	0	1	0	0	0	0	0	0	0	7540	1247	43	2		2	HYOU1	11	118926190	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	555934	118926190	16080326	571	119481											
ARHGEF12	23365	broad.mit.edu	37	chr11	120329011	120329011	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagagtgaattaagtctctCagccttggagtttgcttcaa	9	8	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120329011	G	G	120329011	1	3	133	0	1	0	0	0	0	0	0	0	899	841	29	4		4	ARHGEF12	11	120329011	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1402821	120329011	14677505	572	119482											
OR10S1	219873	broad.mit.edu	37	chr11	123847504	123847504	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaaagtgtaaatgaatgGgttgagcattggagttacga	13	5	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123847504	C	C	123847504	3	2	133	1	0	0	0	0	1	0	0	0	11012	1232	43	4	104	4	OR10S1	11	123847504	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3518493	123847504	11159012	573	119483											
TMEM218	219854	broad.mit.edu	37	chr11	124983922	124983922	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatgcttgtgttgttctaCagattgacaatgcccgtctt	8	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124983922	T	T	124983922	1	4	133	0	1	0	0	0	0	0	0	0	16264	493	17	4		4	TMEM218	11	124983922	5'Flank	SNP	C	TCGA-49-4487-01A-21D-1855-08	1136418	124983922	10022594	574	119484											
SNX19	399979	broad.mit.edu	37	chr11	130781567	130781567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggtttctcctccagacGggtctgcagattcaagaact	9	11	4	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130781567	T	T	130781567	3	4	133	1	0	0	0	0	1	0	0	0	15004	1116	39	1	1244	1	SNX19	11	130781567	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	5797645	130781567	4224949	575	119485											
IGSF9B	22997	broad.mit.edu	37	chr11	133799727	133799727	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagaactcagccacgtgGctgggtgcccaccgtctggc	13	13	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133799727	A	A	133799727	1	1	133	0	1	0	0	0	0	0	0	0	7676	1218	42	4		4	IGSF9B	11	133799727	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3018160	133799727	1206789	576	119486											
NCAPD3	23310	broad.mit.edu	37	chr11	134063940	134063941	+	Missense_Mutation	DNP	CC	GA	GA													ttcagtaagagactggagggCctgcttccggacagacactg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	134063941	GA	GA	134063940	3	3	133	1	0	0	0	0	1	0	0	0	10301	739	26	4	2785	4	NCAPD3	11	134063940	Missense_Mutation	DNP	CC	TCGA-49-4487-01A-21D-1855-08	264213	134063940	942576	577	119487											
ACAD8	27034	broad.mit.edu	37	chr11	134131327	134131327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccgggacctgctctagGgcccacatttccaggagaga	12	14	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134131327	T	T	134131327	1	4	133	0	1	0	0	0	0	0	0	0	110	1247	43	2		2	ACAD8	11	134131327	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	67387	134131327	875189	578	119488											
DYRK4	8798	broad.mit.edu	37	chr12	4708160	4708160	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccttatatgtttttttaCacccatatgcatcacttttc	3	11	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4708160	A	A	4708160	1	1	133	0	1	0	0	0	0	0	0	0	4898	493	17	3		3	DYRK4	12	4708160	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08		4708160	129143735	579	119489											
KCNA5	3741	broad.mit.edu	37	chr12	5153913	5153913	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgtgttcgcggacgagatAcgcttctaccagctggggga	15	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5153913	G	G	5153913	3	3	133	1	0	0	0	0	1	0	0	0	8076	381	14	5	602	5	KCNA5	12	5153913	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	445753	5153913	128697982	580	119490											
VWF	7450	broad.mit.edu	37	chr12	6120900	6120901	+	Missense_Mutation	DNP	GG	TT	TT													atgactcttcagcaaggtctGgccatctggctggcaagtca							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6120901	TT	TT	6120900	3	4	133	1	0	0	0	0	1	0	0	0	17373	1357	47	2	2792	2	VWF	12	6120900	Missense_Mutation	DNP	GG	TCGA-49-4487-01A-21D-1855-08	966987	6120900	127730995	581	119491											
GAPDH	2597	broad.mit.edu	37	chr12	6646577	6646577	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtatgagagctggggaatggGactgaggctcccacctttct	14	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6646577	T	T	6646577	1	4	133	0	1	0	0	0	0	0	0	0	6298	1189	41	3		3	GAPDH	12	6646577	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	525677	6646577	127205318	582	119492											
COPS7A	50813	broad.mit.edu	37	chr12	6840277	6840277	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttaggagtcctcagagaGccttctgtgcccctggccag	11	14	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6840277	T	T	6840277	1	4	133	0	1	0	0	0	0	0	0	0	3770	986	34	3		3	COPS7A	12	6840277	3'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	193700	6840277	127011618	583	119493											
TPI1	7167	broad.mit.edu	37	chr12	6978185	6978185	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggggtgtgtgggaccCttccctcactttcctcgttg	14	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6978185	A	A	6978185	1	1	133	0	1	0	0	0	0	0	0	0	16527	696	24	2		2	TPI1	12	6978185	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	137908	6978185	126873710	584	119494											
RBP5	83758	broad.mit.edu	37	chr12	7280929	7280929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcggaaggtgctgagcgtCctcaccgtcatgtggttgcc	13	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7280929	A	A	7280929	3	1	133	1	0	0	0	0	1	0	0	0	13267	854	30	3	260	3	RBP5	12	7280929	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	302744	7280929	126570966	585	119495											
CD163L1	283316	broad.mit.edu	37	chr12	7528081	7528081	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgcatagaacacgggcatCttctgggtcccagtgggtgt	13	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7528081	T	T	7528081	3	4	133	1	0	0	0	0	1	0	0	0	2998	913	32	4	1600	4	CD163L1	12	7528081	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	247152	7528081	126323814	586	119496											
CLEC4E	26253	broad.mit.edu	37	chr12	8688715	8688715	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcaaaggtgtgccgtcCacccattgccactgaccctc	8	15	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8688715	T	T	8688715	2	4	133	1	0	0	0	0	0	0	0	1	3547	581	21	4		4	CLEC4E	12	8688715	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1160634	8688715	125163180	587	119497											
PHC1	1911	broad.mit.edu	37	chr12	9089500	9089500	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgagtactgtgggaagtAcgcccccgcagagcagtttc	14	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9089500	T	T	9089500	3	4	133	1	0	0	0	0	1	0	0	0	11911	391	14	5	2459	5	PHC1	12	9089500	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	400785	9089500	124762395	588	119498											
TAS2R20	259295	broad.mit.edu	37	chr12	11149674	11149674	+	Frame_Shift_Del	DEL	A	-	-													aatgatggatatatgattccAaaagcttggcaaagcattaa							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11149674	-	-	11149674	7	5	133	1	0	1	0	1	0	0	0	0	15690	127	5	0	132	0	TAS2R20	12	11149674	Frame_Shift_Del	DEL	A	TCGA-49-4487-01A-21D-1855-08	2060174	11149674	122702221	589	119499											
LRP6	4040	broad.mit.edu	37	chr12	12353089	12353089	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttgcagagtagctgggtgCccaacatcacattgaagtat	10	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12353089	G	G	12353089	1	3	133	0	1	0	0	0	0	0	0	0	9049	754	26	4		4	LRP6	12	12353089	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1203415	12353089	121498806	590	119500											
GRIN2B	2904	broad.mit.edu	37	chr12	13720066	13720066	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgaaggtgatgaggctgaGagccatggccgcccccaaca	14	11	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13720066	T	T	13720066	3	4	133	1	0	0	0	0	1	0	0	0	6846	942	33	3	1971	3	GRIN2B	12	13720066	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1366977	13720066	120131829	591	119501											
PTPRO	5800	broad.mit.edu	37	chr12	15747809	15747809	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatcattaaaattgtcataGtataaaatattatatctttg	4	3	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15747809	A	A	15747809	1	1	133	0	1	0	0	0	0	0	0	0	12917	1044	36	4		4	PTPRO	12	15747809	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2027743	15747809	118104086	592	119502											
LMO3	55885	broad.mit.edu	37	chr12	16704097	16704097	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaattcttatgtacatgtgGagcaaaaaagataaaagaat	7	4	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16704097	A	A	16704097	1	1	133	0	1	0	0	0	0	0	0	0	8927	1189	41	4		4	LMO3	12	16704097	3'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	956288	16704097	117147798	593	119503											
LST-3TM12	338821	broad.mit.edu	37	chr12	21196363	21196363	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccattatttcttctataCcattctttttcttgcctcta	1	11	5	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21196363	A	A	21196363	3	1	133	1	0	0	0	0	1	0	0	0	9153	507	18	3	704	3	LST-3TM12	12	21196363	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	4492266	21196363	112655532	594	119504											
CAPRIN2	65981	broad.mit.edu	37	chr12	30881654	30881655	+	Missense_Mutation	DNP	CC	AA	AA													aggcttgctgtagctactccCcaggactttggagaaatctg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	30881655	AA	AA	30881654	3	1	133	1	0	0	0	0	1	0	0	0	2662	624	22	2	1717	2	CAPRIN2	12	30881654	Missense_Mutation	DNP	CC	TCGA-49-4487-01A-21D-1855-08	9685291	30881654	102970241	595	119505											
C12orf40	283461	broad.mit.edu	37	chr12	40114727	40114727	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaggattgttaaaaacgatGacaaaattcacaaacagaat	6	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40114727	A	A	40114727	3	1	133	1	0	0	0	0	1	0	0	0	1699	1290	45	4	1683	4	C12orf40	12	40114727	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	9233073	40114727	93737168	596	119506											
OR8S1	341568	broad.mit.edu	37	chr12	48919525	48919525	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcctggggatttacctcctGaccataatggaaaacctgat	8	10	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48919525	T	T	48919525	2	4	133	1	0	0	0	0	0	0	0	1	11340	1277	45	3		3	OR8S1	12	48919525	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	8804798	48919525	84932370	597	119507											
DDX23	9416	broad.mit.edu	37	chr12	49226401	49226401	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcacccaggcaggaataatCatatatcccactgtcaccga	7	13	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49226401	A	A	49226401	1	1	133	0	1	0	0	0	0	0	0	0	4383	841	29	3		3	DDX23	12	49226401	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	306876	49226401	84625494	598	119508											
DNAJC22	79962	broad.mit.edu	37	chr12	49742639	49742639	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaaccggacttgttctgaGacctttgccctagaggatgg	12	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49742639	C	C	49742639	1	2	133	0	1	0	0	0	0	0	0	0	4681	957	33	4		4	DNAJC22	12	49742639	5'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	516238	49742639	84109256	599	119509											
LIMA1	51474	broad.mit.edu	37	chr12	50589612	50589612	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctaagaaagaatgcttaCgggagtcatcttcggcaggg	13	7	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50589612	T	T	50589612	5	4	133	1	0	0	0	0	0	0	1	0	8868	550	19	4	1267	4	LIMA1	12	50589612	Splice_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	846973	50589612	83262283	600	119510											
KRT71	112802	broad.mit.edu	37	chr12	52941574	52941574	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggcccatgttctcagCagctcatctcccctctactc	8	16	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52941574	G	G	52941574	1	3	133	0	1	0	0	0	0	0	0	0	8555	725	25	4		4	KRT71	12	52941574	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2351962	52941574	80910321	601	119511											
OR9K2	441639	broad.mit.edu	37	chr12	55523851	55523851	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgatcttttctattcatCtgttattgaacccaaggcta	5	9	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55523851	G	G	55523851	3	3	133	1	0	0	0	0	1	0	0	0	11348	913	32	4	301	4	OR9K2	12	55523851	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2582277	55523851	78328044	602	119512											
TIMELESS	8914	broad.mit.edu	37	chr12	56824590	56824590	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagccaccaggcacagccaaGaactcttaagatgattaccc	8	13	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56824590	T	T	56824590	1	4	133	0	1	0	0	0	0	0	0	0	16027	957	33	3		3	TIMELESS	12	56824590	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1300739	56824590	77027305	603	119513											
TMEM194A	23306	broad.mit.edu	37	chr12	57466491	57466491	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttttaagcatgtgaagggGaagaaagtgtcaaaatactc	10	4	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57466491	A	A	57466491	1	1	133	0	1	0	0	0	0	0	0	0	16239	1189	41	4		4	TMEM194A	12	57466491	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	641901	57466491	76385404	604	119514											
KIF5A	3798	broad.mit.edu	37	chr12	57974797	57974797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaattggaaaaacgacttaGggctacggctgagagagtta	12	5	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57974797	T	T	57974797	3	4	133	1	0	0	0	0	1	0	0	0	8375	1000	35	2	2691	2	KIF5A	12	57974797	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	508306	57974797	75877098	605	119515											
DPY19L2	283417	broad.mit.edu	37	chr12	63977672	63977672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttttatactatgaataCataaaaataagcttcatttg	5	5	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63977672	A	A	63977672	1	1	133	0	1	0	0	0	0	0	0	0	4781	493	17	3		3	DPY19L2	12	63977672	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	6002875	63977672	69874223	606	119516											
CPM	1368	broad.mit.edu	37	chr12	69279726	69279726	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctcttaaaatgacaaatGaactctggtaagactaggaa	8	6	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69279726	A	A	69279726	1	1	133	0	1	0	0	0	0	0	0	0	3840	1305	45	4		4	CPM	12	69279726	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	5302054	69279726	64572169	607	119517											
KCNC2	3747	broad.mit.edu	37	chr12	75444222	75444222	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgcccagacatgtgtcactCtgtgtactattgcaggccat	9	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75444222	G	G	75444222	3	3	133	1	0	0	0	0	1	0	0	0	8085	912	32	4	431	4	KCNC2	12	75444222	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	6164496	75444222	58407673	608	119518											
KCNC2	3747	broad.mit.edu	37	chr12	75444888	75444888	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgggtgaaaaaacaatacgGactaaaaattcaaaagtaaa	7	4	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75444888	A	A	75444888	2	1	133	1	0	0	0	0	0	0	0	1	8085	1161	41	4		4	KCNC2	12	75444888	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	666	75444888	58407007	609	119519											
SLC6A15	55117	broad.mit.edu	37	chr12	85285712	85285712	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgtagtttactgttccaaGctggtctttcatcttcgact	7	9	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85285712	C	C	85285712	3	2	133	1	0	0	0	0	1	0	0	0	14792	971	34	4	2162	4	SLC6A15	12	85285712	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	9840824	85285712	48566183	610	119520											
IGF1	3479	broad.mit.edu	37	chr12	102811579	102811579	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatccttgcctctgtctgTttaatcctcctgtccttcat	4	14	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102811579	G	G	102811579	1	3	133	0	1	0	0	0	0	0	0	0	7640	1740	60	5		5	IGF1	12	102811579	3'UTR	SNP	T	TCGA-49-4487-01A-21D-1855-08	17525867	102811579	31040316	611	119521											
BTBD11	121551	broad.mit.edu	37	chr12	107937905	107937905	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagccttccaaagtcaacctCcaggtggaaaggtaagaact	10	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107937905	A	A	107937905	2	1	133	1	0	0	0	0	0	0	0	1	1548	842	30	3		3	BTBD11	12	107937905	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	5126326	107937905	25913990	612	119522											
BTBD11	121551	broad.mit.edu	37	chr12	108042999	108042999	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagctggttatgcagtatcTctactatggtggcccagagt	11	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108042999	A	A	108042999	3	1	133	1	0	0	0	0	1	0	0	0	1548	1551	54	5	3102	5	BTBD11	12	108042999	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	105094	108042999	25808896	613	119523											
SVOP	55530	broad.mit.edu	37	chr12	109306415	109306415	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggactcctgcagtcctcGgcctttggtctcaatgggca	12	13	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109306415	A	A	109306415	4	1	133	1	0	0	0	0	0	1	0	0	15541	1124	39	4	107	4	SVOP	12	109306415	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1263416	109306415	24545480	614	119524											
ALDH2	217	broad.mit.edu	37	chr12	112223000	112223000	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcagtcccagccttggcGccctctgtcagccctttgtt	8	16	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112223000	T	T	112223000	1	4	133	0	1	0	0	0	0	0	0	0	496	1102	38	3		3	ALDH2	12	112223000	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2916585	112223000	21628895	615	119525											
RPH3A	22895	broad.mit.edu	37	chr12	113303159	113303159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactatcaacctgacactgtGgggtatgctggtggtcccca	12	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113303159	A	A	113303159	1	1	133	0	1	0	0	0	0	0	0	0	13662	1363	47	4		4	RPH3A	12	113303159	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1080159	113303159	20548736	616	119526											
VPS33A	65082	broad.mit.edu	37	chr12	122729395	122729395	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcacaaaacagaatttccaActcaggagaaaatggaagac	8	8	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122729395	G	G	122729395	1	3	133	0	1	0	0	0	0	0	0	0	17328	58	2	5		5	VPS33A	12	122729395	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	9426236	122729395	11122500	617	119527											
GPR109A	338442	broad.mit.edu	37	chr12	123186931	123186931	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagaagaagttgggaaaGgatgggctggagaagtagta	19	1	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123186931	T	T	123186931	2	4	133	1	0	0	0	0	0	0	0	1	6690	987	35	2		2	GPR109A	12	123186931	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	457536	123186931	10664964	618	119528											
RILPL2	196383	broad.mit.edu	37	chr12	123915011	123915011	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacctagcaaggaattcTgggccaggtctgggtgcagg	15	8	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123915011	C	C	123915011	1	2	133	0	1	0	0	0	0	0	0	0	13471	1595	55	5		5	RILPL2	12	123915011	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	728080	123915011	9936884	619	119529											
DNAH10	196385	broad.mit.edu	37	chr12	124350393	124350393	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgattttggtattattTggatttcatgcagttgtaaa	10	2	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124350393	C	C	124350393	1	2	133	0	1	0	0	0	0	0	0	0	4638	1827	63	5		5	DNAH10	12	124350393	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	435382	124350393	9501502	620	119530											
AACS	65985	broad.mit.edu	37	chr12	125613889	125613889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccataccaggaaaggcgGtctggggagagagcggcgag	17	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125613889	T	T	125613889	3	4	133	1	0	0	0	0	1	0	0	0	9	1261	44	3	1486	3	AACS	12	125613889	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1263496	125613889	8238006	621	119531											
TMEM132D	121256	broad.mit.edu	37	chr12	129559047	129559047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttctggggaggtccacCtgggctgggaagctggtgag	18	8	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129559047	A	A	129559047	3	1	133	1	0	0	0	0	1	0	0	0	16170	680	24	2	630	2	TMEM132D	12	129559047	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3945158	129559047	4292848	622	119532											
FZD10	11211	broad.mit.edu	37	chr12	130648268	130648268	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcttccgctaccccgagCgccccatcatcttcctctcc	5	23	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130648268	T	T	130648268	3	4	133	1	0	0	0	0	1	0	0	0	6189	768	27	4	783	4	FZD10	12	130648268	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1089221	130648268	3203627	623	119533											
TUBA3C	7278	broad.mit.edu	37	chr13	19748131	19748131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccatgccttctcccaCgtaccagtgcacaaaggccc	6	19	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19748131	A	A	19748131	3	1	133	1	0	0	0	0	1	0	0	0	16872	536	19	3	131	3	TUBA3C	13	19748131	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08		19748131	95421747	624	119534											
UBL3	5412	broad.mit.edu	37	chr13	30423695	30423695	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgccgtttgatatacacCcagatgtttacgaaaaaaac	6	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30423695	A	A	30423695	1	1	133	0	1	0	0	0	0	0	0	0	17012	638	22	2		2	UBL3	13	30423695	5'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	10675564	30423695	84746183	625	119535											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37679325	37679325	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctccaaaggagccagacccGatcttccgcaccagtttgta	8	14	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37679325	C	C	37679325	3	2	133	1	0	0	0	0	1	0	0	0	3985	1048	37	4	948	4	CSNK1A1L	13	37679325	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	7255630	37679325	77490553	626	119536											
ATP7B	540	broad.mit.edu	37	chr13	52539088	52539088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctggtggcaagggcaaCggaggcataagtgatgccat	15	7	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52539088	A	A	52539088	3	1	133	1	0	0	0	0	1	0	0	0	1195	536	19	3	2676	3	ATP7B	13	52539088	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	14859763	52539088	62630790	627	119537											
DACH1	1602	broad.mit.edu	37	chr13	72249456	72249456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatctgcgcttccagagCgcagctatcggtgctttgca	11	12	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72249456	A	A	72249456	1	1	133	0	1	0	0	0	0	0	0	0	4253	783	27	3		3	DACH1	13	72249456	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	19710368	72249456	42920422	628	119538											
C13orf34	79866	broad.mit.edu	37	chr13	73320191	73320191	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctcaccaattgaatttcAgataggagagactccactct	6	10	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73320191	G	G	73320191	3	3	133	1	0	0	0	0	1	0	0	0	1741	188	7	5	878	5	C13orf34	13	73320191	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	1070735	73320191	41849687	629	119539											
MYCBP2	23077	broad.mit.edu	37	chr13	77779653	77779653	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttctttagaataaacctTcattactgcttgagtctctt	4	9	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77779653	G	G	77779653	3	3	133	1	0	0	0	0	1	0	0	0	10112	1792	62	5	10602	5	MYCBP2	13	77779653	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	4459462	77779653	37390225	630	119540											
SLITRK5	26050	broad.mit.edu	37	chr13	88328487	88328487	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacgaggtatccaagcagGaactttgcccaaggagactt	12	9	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88328487	T	T	88328487	4	4	133	1	0	0	0	0	0	1	0	0	14860	1175	41	3	846	3	SLITRK5	13	88328487	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	10548834	88328487	26841391	631	119541											
TEP1	7011	broad.mit.edu	37	chr14	20847169	20847169	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcaggtcccagagctcCaggagcccgtcgaaggcagt	14	13	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20847169	A	A	20847169	2	1	133	1	0	0	0	0	0	0	0	1	15881	581	21	2		2	TEP1	14	20847169	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08		20847169	86502371	632	119542											
RPGRIP1	57096	broad.mit.edu	37	chr14	21795868	21795868	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttccctacataccccctGagagcttcctgaaaccagaa	6	14	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21795868	T	T	21795868	4	4	133	1	0	0	0	0	0	1	0	0	13660	1291	45	3	2863	3	RPGRIP1	14	21795868	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	948699	21795868	85553672	633	119543											
MYH6	4624	broad.mit.edu	37	chr14	23876300	23876300	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcttggctttgacaaactCttccttgtcatcgggcacga	8	11	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23876300	G	G	23876300	3	3	133	1	0	0	0	0	1	0	0	0	10132	922	32	4	5834	4	MYH6	14	23876300	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2080432	23876300	83473240	634	119544											
RNF31	55072	broad.mit.edu	37	chr14	24618772	24618772	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accctgcctggggtcctgcaGggtacccacctgagccccag	12	17	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24618772	C	C	24618772	3	2	133	1	0	0	0	0	1	0	0	0	13598	991	35	4	811	4	RNF31	14	24618772	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	742472	24618772	82730768	635	119545											
GZMB	3002	broad.mit.edu	37	chr14	25103412	25103412	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagctgctgttgtttcctccTtgctctcttttagctcttgg	9	11	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25103412	A	A	25103412	1	1	133	1	0	0	0	0	0	0	0	0	6981	1624	56	5		5	GZMB	14	25103412	Translation_Start_Site	SNP	T	TCGA-49-4487-01A-21D-1855-08	484640	25103412	82246128	636	119546											
FANCM	57697	broad.mit.edu	37	chr14	45669130	45669130	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcagaaggctgaggagatCtatagatatattcactatgt	9	6	3	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45669130	G	G	45669130	3	3	133	1	0	0	0	0	1	0	0	0	5728	903	32	4	6156	4	FANCM	14	45669130	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	20565718	45669130	61680410	637	119547											
GMFB	2764	broad.mit.edu	37	chr14	54948825	54948825	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatagcatcttttgagaaaTaataattacttaactataaa	3	4	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54948825	C	C	54948825	1	2	133	0	1	0	0	0	0	0	0	0	6553	1421	49	5		5	GMFB	14	54948825	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	9279695	54948825	52400715	638	119548											
MAPK1IP1L	93487	broad.mit.edu	37	chr14	55518564	55518564	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagtcgtgaaggggaatcGgggagctggggttgcggagc	23	5	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55518564	A	A	55518564	1	1	133	0	1	0	0	0	0	0	0	0	9370	1131	39	4		4	MAPK1IP1L	14	55518564	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	569739	55518564	51830976	639	119549											
ZFYVE26	23503	broad.mit.edu	37	chr14	68256100	68256100	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgttcggctgtctccaaaaGctgcttgcaggttttccaga	10	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68256100	C	C	68256100	3	2	133	1	0	0	0	0	1	0	0	0	17794	971	34	4	4756	4	ZFYVE26	14	68256100	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	12737536	68256100	39093440	640	119550											
ACTN1	87	broad.mit.edu	37	chr14	69354646	69354646	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgctccctttttccctttTgtttgcacttttttgtctga	5	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69354646	A	A	69354646	1	1	133	0	1	0	0	0	0	0	0	0	204	1827	63	5		5	ACTN1	14	69354646	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	1098546	69354646	37994894	641	119551											
KCNK10	54207	broad.mit.edu	37	chr14	88654247	88654247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccacaggacagagacaGgcaattctggacacaagctc	10	13	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88654247	T	T	88654247	1	4	133	0	1	0	0	0	0	0	0	0	8129	1015	35	2		2	KCNK10	14	88654247	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	19299601	88654247	18695293	642	119552											
C14orf159	80017	broad.mit.edu	37	chr14	91626659	91626659	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcccttcacactccacctGaggtcccgccttccctctgc	6	20	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91626659	T	T	91626659	2	4	133	1	0	0	0	0	0	0	0	1	1768	1277	45	3		3	C14orf159	14	91626659	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2972412	91626659	15722881	643	119553											
FBLN5	10516	broad.mit.edu	37	chr14	92344055	92344055	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggaaatcacgtgagaactCaagaaatccattccaggtgc	10	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92344055	G	G	92344055	1	3	133	0	1	0	0	0	0	0	0	0	5757	841	29	4		4	FBLN5	14	92344055	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	717396	92344055	15005485	644	119554											
TNFAIP2	7127	broad.mit.edu	37	chr14	103596402	103596402	+	Missense_Mutation	SNP	G	T	T													cacggcgctgggctgaggatGtgcctccccagaggctggac							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103596402	T	T	103596402	3	4	133	1	0	0	0	0	1	0	0	0	16396	1377	48	3	1053	3	TNFAIP2	14	103596402	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	11252347	103596402	3753138	645	119555	520	2									
TNFAIP2	7127	broad.mit.edu	37	chr14	103596404	103596404	+	Silent	SNP	G	T	T													cggcgctgggctgaggatgtGcctccccagaggctggacgg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103596404	T	T	103596404	2	4	133	1	0	0	0	0	0	0	0	1	16396	1306	46	3		3	TNFAIP2	14	103596404	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2	103596404	3753136	646	119556	520	2									
OR4N4	283694	broad.mit.edu	37	chr15	22382452	22382452	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaaataaactcttttattGatattctacaggcagaagaa	6	5	2	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22382452	T	T	22382452	1	4	133	0	1	0	0	0	0	0	0	0	11172	1305	45	3		3	OR4N4	15	22382452	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08		22382452	80148940	647	119557											
HERC2	8924	broad.mit.edu	37	chr15	28491134	28491134	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccacccagcagaggtacaGctccagcctcttgcatgaga	11	14	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28491134	C	C	28491134	3	2	133	1	0	0	0	0	1	0	0	0	7125	971	34	4	11318	4	HERC2	15	28491134	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	6108682	28491134	74040258	648	119558											
RYR3	6263	broad.mit.edu	37	chr15	33905465	33905465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgctgcctggacctcgGggtgcccagcatctcattcc	11	15	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33905465	T	T	33905465	3	4	133	1	0	0	0	0	1	0	0	0	13881	1232	43	2	2320	2	RYR3	15	33905465	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	5414331	33905465	68625927	649	119559											
RYR3	6263	broad.mit.edu	37	chr15	34093136	34093136	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaactgttgatgaaaaaaagCcaacagtaaaatattcgaag	7	5	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34093136	G	G	34093136	1	3	133	0	1	0	0	0	0	0	0	0	13881	754	26	4		4	RYR3	15	34093136	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	187671	34093136	68438256	650	119560											
TMEM85	51234	broad.mit.edu	37	chr15	34519984	34519984	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaatactatctccatcttcCctactatgatggtgtgtatg	7	10	2	1	rs11544437		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34519984	G	G	34519984	3	3	133	1	0	0	0	0	1	0	0	0	16330	623	22	4	302	4	TMEM85	15	34519984	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	426848	34519984	68011408	651	119561											
BAHD1	22893	broad.mit.edu	37	chr15	40757633	40757633	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacttttgccgagtactgcAggtaggtggttccctgcacc	12	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40757633	T	T	40757633	3	4	133	1	0	0	0	0	1	0	0	0	1302	202	7	5	2170	5	BAHD1	15	40757633	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	6237649	40757633	61773759	652	119562											
LTK	4058	broad.mit.edu	37	chr15	41799232	41799232	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttataattcactacagcaggGagagaatcagaggtggggat	13	5	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41799232	A	A	41799232	1	1	133	0	1	0	0	0	0	0	0	0	9167	1189	41	4		4	LTK	15	41799232	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1041599	41799232	60732160	653	119563											
SLC28A2	9153	broad.mit.edu	37	chr15	45564935	45564935	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaaacacaagtttcacCaatagaacctatgagaccta	4	12	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45564935	A	A	45564935	2	1	133	1	0	0	0	0	0	0	0	1	14646	581	21	2		2	SLC28A2	15	45564935	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	3765703	45564935	56966457	654	119564											
FBN1	2200	broad.mit.edu	37	chr15	48744717	48744717	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgaagcttcatgaagacaAactcttgggtaggcatgtcc	10	9	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48744717	G	G	48744717	1	3	133	0	1	0	0	0	0	0	0	0	5759	29	1	5		5	FBN1	15	48744717	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	3179782	48744717	53786675	655	119565											
FBN1	2200	broad.mit.edu	37	chr15	48755419	48755419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatagtagtttctgtagCacaaacttcttctcatatct	5	10	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48755419	A	A	48755419	3	1	133	1	0	0	0	0	1	0	0	0	5759	710	25	3	3631	3	FBN1	15	48755419	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	10702	48755419	53775973	656	119566											
FBN1	2200	broad.mit.edu	37	chr15	48776235	48776235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagtcaaataaacttagcCtactagcataagactattaa	5	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48776235	A	A	48776235	1	1	133	0	1	0	0	0	0	0	0	0	5759	696	24	2		2	FBN1	15	48776235	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	20816	48776235	53755157	657	119567											
LIPC	3990	broad.mit.edu	37	chr15	58834830	58834830	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagttccatcggtggaacgcAcaagattgggagaatcacag	12	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58834830	T	T	58834830	3	4	133	1	0	0	0	0	1	0	0	0	8893	159	6	5	568	5	LIPC	15	58834830	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	10058595	58834830	43696562	658	119568											
PARP16	54956	broad.mit.edu	37	chr15	65553264	65553264	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaccaggaggtacttcacTcgcagcagctggttattggt	11	10	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65553264	A	A	65553264	2	1	133	1	0	0	0	0	0	0	0	1	11554	1538	54	5		5	PARP16	15	65553264	Silent	SNP	T	TCGA-49-4487-01A-21D-1855-08	6718434	65553264	36978128	659	119569											
IGDCC4	57722	broad.mit.edu	37	chr15	65681001	65681001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggcagggaggggactGggagagtctgctctccactt	18	8	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65681001	T	T	65681001	1	4	133	0	1	0	0	0	0	0	0	0	7639	1363	47	2		2	IGDCC4	15	65681001	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	127737	65681001	36850391	660	119570											
DENND4A	10260	broad.mit.edu	37	chr15	65998352	65998352	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggatttttgaaaataccAcagtccttagaaagctacgt	7	7	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65998352	G	G	65998352	1	3	133	0	1	0	0	0	0	0	0	0	4473	174	6	5		5	DENND4A	15	65998352	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	317351	65998352	36533040	661	119571											
THSD4	79875	broad.mit.edu	37	chr15	72050104	72050104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataatggagtaggctatgcAcgagaagctgccagatattt	11	7	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72050104	T	T	72050104	1	4	133	0	1	0	0	0	0	0	0	0	16001	174	6	5		5	THSD4	15	72050104	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	6051752	72050104	30481288	662	119572											
SIN3A	25942	broad.mit.edu	37	chr15	75668239	75668239	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagaaaagccccggaggatGagagctcgtccagatgcaga	14	10	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75668239	A	A	75668239	1	1	133	0	1	0	0	0	0	0	0	0	14438	1305	45	4		4	SIN3A	15	75668239	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3618135	75668239	26863153	663	119573											
CSPG4	1464	broad.mit.edu	37	chr15	75983101	75983101	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggagtcactcagcagcGtctctgctggagtctgcagc	14	11	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75983101	A	A	75983101	3	1	133	1	0	0	0	0	1	0	0	0	3994	1145	40	4	6695	4	CSPG4	15	75983101	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	314862	75983101	26548291	664	119574											
CPEB1	64506	broad.mit.edu	37	chr15	83221230	83221230	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggacatcacgctaactcacCtccttgcagcgcatccttcg	7	16	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83221230	G	G	83221230	3	3	133	1	0	0	0	0	1	0	0	0	3832	695	24	4	505	4	CPEB1	15	83221230	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	7238129	83221230	19310162	665	119575											
NGRN	51335	broad.mit.edu	37	chr15	90808965	90808965	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggcggttaccctgagtctCttgctgggcgggcgcgtttg	16	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90808965	T	T	90808965	2	4	133	1	0	0	0	0	0	0	0	1	10494	900	32	4		4	NGRN	15	90808965	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	7587735	90808965	11722427	666	119576											
LUC7L	55692	broad.mit.edu	37	chr16	239215	239215	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttcagatctcgccggcctcCttctcttctgacctccgtga	8	16	4	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	239215	G	G	239215	3	3	133	1	0	0	0	0	1	0	0	0	9169	680	24	4	21	4	LUC7L	16	239215	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08		239215	90115538	667	119577											
RNF151	146310	broad.mit.edu	37	chr16	2017007	2017007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcaatgggttgcagacccCcatatggtacaaggaaacct	12	10	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2017007	T	T	2017007	1	4	133	0	1	0	0	0	0	0	0	0	13563	638	22	4		4	RNF151	16	2017007	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1777792	2017007	88337746	668	119578											
PKD1	5310	broad.mit.edu	37	chr16	2141950	2141950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccgcaccccagcccttcCggcaccccggagccaggctg	12	20	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2141950	A	A	2141950	1	1	133	0	1	0	0	0	0	0	0	0	12058	667	23	1		1	PKD1	16	2141950	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	124943	2141950	88212803	669	119579											
PKD1	5310	broad.mit.edu	37	chr16	2147731	2147731	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctctagggaacccacctCttagaatcatccagaaacaa	5	12	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2147731	G	G	2147731	3	3	133	1	0	0	0	0	1	0	0	0	12058	912	32	4	2753	4	PKD1	16	2147731	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5781	2147731	88207022	670	119580											
CCNF	899	broad.mit.edu	37	chr16	2499029	2499029	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttcgttgtcgctgtgctgGagggtgggggtgggcattca	18	7	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2499029	C	C	2499029	1	2	133	0	1	0	0	0	0	0	0	0	2952	1189	41	4		4	CCNF	16	2499029	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	351298	2499029	87855724	671	119581											
THOC6	79228	broad.mit.edu	37	chr16	3074344	3074344	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagatggagcgagctgtgcCgctcgcggtgcctctgggtc	18	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3074344	T	T	3074344	3	4	133	1	0	0	0	0	1	0	0	0	15992	652	23	4	19	4	THOC6	16	3074344	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	575315	3074344	87280409	672	119582											
CORO7	79585	broad.mit.edu	37	chr16	4466427	4466427	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagccggacggggcccgaGgcgacagcgcccggtcctcg	18	16	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4466427	A	A	4466427	1	1	133	0	1	0	0	0	0	0	0	0	3791	1015	35	4		4	CORO7	16	4466427	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1392083	4466427	85888326	673	119583											
A2BP1	54715	broad.mit.edu	37	chr16	7743287	7743287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatttccccctgagcgagCagtattgtgaattttatctt	7	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7743287	A	A	7743287	1	1	133	0	1	0	0	0	0	0	0	0	3	725	25	3		3	A2BP1	16	7743287	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	3276860	7743287	82611466	674	119584											
RUNDC2A	84127	broad.mit.edu	37	chr16	12142251	12142251	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaactccatactctttgcGattaacatcgacaacaagga	6	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12142251	T	T	12142251	2	4	133	1	0	0	0	0	0	0	0	1	13854	1045	37	3		3	RUNDC2A	16	12142251	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	4398964	12142251	78212502	675	119585											
NDE1	54820	broad.mit.edu	37	chr16	15761018	15761018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagactgaggcaggagaatcGcttgaacctggaaagcagag	15	7	0	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15761018	T	T	15761018	1	4	133	0	1	0	0	0	0	0	0	0	10338	1102	38	3		3	NDE1	16	15761018	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3618767	15761018	74593735	676	119586											
MYH11	4629	broad.mit.edu	37	chr16	15815397	15815397	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttcaagggcccgagccaggGacagggccttggtttccttc	13	13	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15815397	C	C	15815397	3	2	133	1	0	0	0	0	1	0	0	0	10125	1174	41	4	1533	4	MYH11	16	15815397	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	54379	15815397	74539356	677	119587											
SMG1	23049	broad.mit.edu	37	chr16	18826800	18826800	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttctttcaaggtgggagtGatttcctggagcatttcaac	11	7	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18826800	C	C	18826800	3	2	133	1	0	0	0	0	1	0	0	0	14909	1280	45	4	529	4	SMG1	16	18826800	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3011403	18826800	71527953	678	119588											
ACSM2B	348158	broad.mit.edu	37	chr16	20565074	20565074	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctggtcatgcaattctcTgtagagagaaagagctcagc	11	9	3	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20565074	G	G	20565074	1	3	133	0	1	0	0	0	0	0	0	0	184	1595	55	5		5	ACSM2B	16	20565074	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	1738274	20565074	69789679	679	119589											
OTOA	146183	broad.mit.edu	37	chr16	21690098	21690098	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcaagccacggttttctcaGagtggacagttataattaaa	8	7	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21690098	T	T	21690098	1	4	133	0	1	0	0	0	0	0	0	0	11396	957	33	3		3	OTOA	16	21690098	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1125024	21690098	68664655	680	119590											
ATP2A1	487	broad.mit.edu	37	chr16	28893745	28893745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcctcctgtgtataacCctgcctcctccaccctgtct	5	19	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28893745	T	T	28893745	1	4	133	0	1	0	0	0	0	0	0	0	1140	638	22	4		4	ATP2A1	16	28893745	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	7203647	28893745	61461008	681	119591											
SEZ6L2	26470	broad.mit.edu	37	chr16	29899882	29899882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcagctgggggtttcacCgttccaggatggccgggtgc	16	11	1	0	rs143818590	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29899882	A	A	29899882	3	1	133	1	0	0	0	0	1	0	0	0	14257	652	23	1	1805	1	SEZ6L2	16	29899882	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1006137	29899882	60454871	682	119592											
SRCAP	10847	broad.mit.edu	37	chr16	30750800	30750800	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaggggccccagttggtGggagtcctgggctggcaaag	19	9	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30750800	T	T	30750800	3	4	133	1	0	0	0	0	1	0	0	0	15253	1348	47	2	9565	2	SRCAP	16	30750800	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	850918	30750800	59603953	683	119593											
HSD3B7	80270	broad.mit.edu	37	chr16	30999168	30999168	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgggcggccaggtatacttCtgctacgatggatcacccta	11	11	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30999168	A	A	30999168	3	1	133	1	0	0	0	0	1	0	0	0	7459	912	32	3	796	3	HSD3B7	16	30999168	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	248368	30999168	59355585	684	119594											
AHSP	51327	broad.mit.edu	37	chr16	31539549	31539549	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaggtgagtccaagctTtccatttcaaaggactggcc	10	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31539549	A	A	31539549	1	1	133	0	1	0	0	0	0	0	0	0	421	1856	64	5		5	AHSP	16	31539549	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	540381	31539549	58815204	685	119595											
ITFG1	81533	broad.mit.edu	37	chr16	47296908	47296908	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacagagatcaacccctaCccgaagccatcatggctagg	10	13	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47296908	T	T	47296908	1	4	133	0	1	0	0	0	0	0	0	0	7939	522	18	4		4	ITFG1	16	47296908	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	15757359	47296908	43057845	686	119596											
ABCC11	85320	broad.mit.edu	37	chr16	48226557	48226557	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtacaccagctggtagaaGgacagttgaggattgtctgc	13	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48226557	T	T	48226557	2	4	133	1	0	0	0	0	0	0	0	1	51	987	35	2		2	ABCC11	16	48226557	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	929649	48226557	42128196	687	119597											
NKD1	85407	broad.mit.edu	37	chr16	50664048	50664048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctggtttgtattttcaaGgccctgtgactgaaaccctg	9	11	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50664048	T	T	50664048	1	4	133	0	1	0	0	0	0	0	0	0	10536	1015	35	2		2	NKD1	16	50664048	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2437491	50664048	39690705	688	119598											
NKD1	85407	broad.mit.edu	37	chr16	50667195	50667195	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccggaagccatccacatcCcacaccgaaagccccaaggc	8	18	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50667195	G	G	50667195	3	3	133	1	0	0	0	0	1	0	0	0	10536	623	22	4	954	4	NKD1	16	50667195	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3147	50667195	39687558	689	119599											
DPEP2	64174	broad.mit.edu	37	chr16	68026107	68026107	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccagaactggggggaaGgccagggtttggcttggatg	18	7	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68026107	A	A	68026107	1	1	133	0	1	0	0	0	0	0	0	0	4754	1015	35	4		4	DPEP2	16	68026107	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	17358912	68026107	22328646	690	119600											
SF3B3	23450	broad.mit.edu	37	chr16	70602365	70602365	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggactatgacactgtGgctggggcagacaagtttgg	14	9	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70602365	T	T	70602365	2	4	133	1	0	0	0	0	0	0	0	1	14265	1335	47	2		2	SF3B3	16	70602365	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	2576258	70602365	19752388	691	119601											
GEMIN4	50628	broad.mit.edu	37	chr17	650508	650508	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atacacggttgcagacacctCctgggggtcgtcctctgtca	11	13	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	650508	A	A	650508	4	1	133	1	0	0	0	0	0	1	0	0	6394	864	30	3	2405	3	GEMIN4	17	650508	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08		650508	80544702	692	119602											
SPNS3	201305	broad.mit.edu	37	chr17	4356383	4356383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagaagctgcgaggagGtacaagaaagtcattccagg	16	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4356383	T	T	4356383	3	4	133	1	0	0	0	0	1	0	0	0	15194	1252	44	3	1026	3	SPNS3	17	4356383	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3705875	4356383	76838827	693	119603											
PLD2	5338	broad.mit.edu	37	chr17	4720173	4720173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggctctttctccctgccCcaagtgtcccaaggagtcca	9	16	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4720173	A	A	4720173	1	1	133	0	1	0	0	0	0	0	0	0	12141	638	22	2		2	PLD2	17	4720173	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	363790	4720173	76475037	694	119604											
TP53	7157	broad.mit.edu	37	chr17	7579457	7579457	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccggtgtaggagctgctGgtgcaggggccacgggggga	21	10	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579457	A	A	7579457	3	1	133	1	0	0	0	0	1	0	0	0	16505	1348	47	4	1072	4	TP53	17	7579457	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2859284	7579457	73615753	695	119605											
DNAH2	146754	broad.mit.edu	37	chr17	7662780	7662780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacatgattcggctggaccGcatgatggaggatgccctgc	14	10	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7662780	T	T	7662780	3	4	133	1	0	0	0	0	1	0	0	0	4642	1087	38	3	2547	3	DNAH2	17	7662780	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	83323	7662780	73532430	696	119606											
ALOXE3	59344	broad.mit.edu	37	chr17	8006652	8006652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatacacacctggtccttggGttcttggctaaccaaccaga	8	12	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8006652	T	T	8006652	3	4	133	1	0	0	0	0	1	0	0	0	542	1261	44	3	198	3	ALOXE3	17	8006652	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	343872	8006652	73188558	697	119607											
C17orf68	80169	broad.mit.edu	37	chr17	8138501	8138501	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagtgagccccaggcttctGacgagagaagctttgaagca	13	9	1	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8138501	A	A	8138501	4	1	133	1	0	0	0	0	0	1	0	0	1892	1299	45	4	2408	4	C17orf68	17	8138501	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	131849	8138501	73056709	698	119608											
MYH8	4626	broad.mit.edu	37	chr17	10322075	10322076	+	Frame_Shift_Ins	INS	-	A	A													gggcttgtacaccggcagccINSacttgtaggggttgacggtg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10322076	A	A	10322075	7	5	133	1	0	1	1	0	0	0	0	0	10135	595	21	0	5559	0	MYH8	17	10322075	Frame_Shift_Ins	INS	-	TCGA-49-4487-01A-21D-1855-08	2183574	10322075	70873135	699	119609											
MYH2	4620	broad.mit.edu	37	chr17	10433111	10433111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcacctttgttgggtggCagaacctctatacagtactg	10	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10433111	A	A	10433111	1	1	133	0	1	0	0	0	0	0	0	0	10129	725	25	3		3	MYH2	17	10433111	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	111036	10433111	70762099	700	119610											
MYH2	4620	broad.mit.edu	37	chr17	10450698	10450698	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaatgaaagtgaaatggGtcactacctgtgacctattt	9	8	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10450698	T	T	10450698	1	4	133	0	1	0	0	0	0	0	0	0	10129	1276	44	3		3	MYH2	17	10450698	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	17587	10450698	70744512	701	119611											
MYH3	4621	broad.mit.edu	37	chr17	10545805	10545805	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttctggtacagcccaaccAcagtctcgttcagagggtcc	9	14	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10545805	T	T	10545805	3	4	133	1	0	0	0	0	1	0	0	0	10130	159	6	5	4109	5	MYH3	17	10545805	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	95107	10545805	70649405	702	119612											
ELAC2	60528	broad.mit.edu	37	chr17	12905609	12905609	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctctgccactccctcctgGgacggagctggtacttgagg	12	14	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12905609	C	C	12905609	3	2	133	1	0	0	0	0	1	0	0	0	5089	1232	43	4	1238	4	ELAC2	17	12905609	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2359804	12905609	68289601	703	119613											
CCDC144A	9720	broad.mit.edu	37	chr17	16612677	16612677	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcaaggaacccagaagtgGttatggttgaaatgaaagaa	12	4	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16612677	C	C	16612677	3	2	133	1	0	0	0	0	1	0	0	0	2803	1261	44	4	1324	4	CCDC144A	17	16612677	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3707068	16612677	64582533	704	119614											
CCDC144A	9720	broad.mit.edu	37	chr17	16612733	16612733	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcaaatgacaaaaaatatGaaccaaaatagtgacagtgg	8	5	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16612733	C	C	16612733	3	2	133	1	0	0	0	0	1	0	0	0	2803	1290	45	4	1380	4	CCDC144A	17	16612733	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	56	16612733	64582477	705	119615											
COPS3	8533	broad.mit.edu	37	chr17	17152296	17152296	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatttttcagggttatcatGgaaactgaccataccgtcct	7	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17152296	A	A	17152296	3	1	133	1	0	0	0	0	1	0	0	0	3766	1348	47	4	202	4	COPS3	17	17152296	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	539563	17152296	64042914	706	119616											
SLC5A10	125206	broad.mit.edu	37	chr17	18922736	18922736	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccttccactcgcctgcagGctggtcatagtggcactcat	10	14	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18922736	T	T	18922736	2	4	133	1	0	0	0	0	0	0	0	1	14776	1217	42	3		3	SLC5A10	17	18922736	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	1770440	18922736	62272474	707	119617											
KSR1	8844	broad.mit.edu	37	chr17	25924462	25924462	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcaggttcaacttcccaGgtaccacatctccaggcttt	7	14	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25924462	A	A	25924462	3	1	133	1	0	0	0	0	1	0	0	0	8653	1014	35	4	1083	4	KSR1	17	25924462	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	7001726	25924462	55270748	708	119618											
NOS2	4843	broad.mit.edu	37	chr17	26087144	26087144	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcatctcctcctggtagAtgtggtcctcatctgggcgg	12	13	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26087144	C	C	26087144	3	2	133	1	0	0	0	0	1	0	0	0	10638	333	12	5	402	5	NOS2	17	26087144	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	162682	26087144	55108066	709	119619											
PIGS	94005	broad.mit.edu	37	chr17	26890333	26890333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaatttttttttGgagagttttctgtagcaaat	6	2	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26890333	T	T	26890333	1	4	133	0	1	0	0	0	0	0	0	0	11993	1363	47	2		2	PIGS	17	26890333	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	803189	26890333	54304877	710	119620											
EFCAB5	374786	broad.mit.edu	37	chr17	28417673	28417673	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagttctctggagagatAaagaaaaaatatatcttagg	11	4	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28417673	G	G	28417673	3	3	133	1	0	0	0	0	1	0	0	0	4978	352	13	5	4163	5	EFCAB5	17	28417673	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	1527340	28417673	52777537	711	119621											
ACCN1	40	broad.mit.edu	37	chr17	31439050	31439050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgccatcctcgcctgaGttaaacatgtaacacttccc	7	13	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31439050	T	T	31439050	3	4	133	1	0	0	0	0	1	0	0	0	128	1020	36	3	983	3	ACCN1	17	31439050	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3021377	31439050	49756160	712	119622											
SLFN12	55106	broad.mit.edu	37	chr17	33749524	33749524	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccaaggccttcatgttaTtttcttcttgtatatcaaca	6	10	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33749524	C	C	33749524	3	2	133	1	0	0	0	0	1	0	0	0	14848	1493	52	5	1224	5	SLFN12	17	33749524	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	2310474	33749524	47445686	713	119623											
C17orf66	256957	broad.mit.edu	37	chr17	34190551	34190551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcgtacttcactttctctgGaccagtttgggcctaattta	7	11	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34190551	T	T	34190551	3	4	133	1	0	0	0	0	1	0	0	0	1890	1174	41	3	1168	3	C17orf66	17	34190551	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	441027	34190551	47004659	714	119624											
KRT37	8688	broad.mit.edu	37	chr17	39580631	39580631	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactctgttggcgtgtgccaCgttggccaagaggcacatgg	15	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39580631	G	G	39580631	3	3	133	1	0	0	0	0	1	0	0	0	8545	536	19	4	1232	4	KRT37	17	39580631	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5390080	39580631	41614579	715	119625											
KRT36	8689	broad.mit.edu	37	chr17	39644973	39644973	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attctcagacttagtcagcaGgatctggggaacaagaggct	12	8	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39644973	A	A	39644973	2	1	133	1	0	0	0	0	0	0	0	1	8544	991	35	4		4	KRT36	17	39644973	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	64342	39644973	41550237	716	119626											
HAP1	9001	broad.mit.edu	37	chr17	39880994	39880994	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtccggctggcggcagGgagggccccgtgggggcact	20	12	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39880994	C	C	39880994	3	2	133	1	0	0	0	0	1	0	0	0	7019	1232	43	4	44	4	HAP1	17	39880994	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	236021	39880994	41314216	717	119627											
WNK4	65266	broad.mit.edu	37	chr17	40939540	40939540	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccttccttttccgccacgCcagctactcatctaccactt	4	19	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40939540	G	G	40939540	3	3	133	1	0	0	0	0	1	0	0	0	17507	739	26	4	1747	4	WNK4	17	40939540	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1058546	40939540	40255670	718	119628											
DHX8	1659	broad.mit.edu	37	chr17	41590875	41590875	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacgcctatttctcaggtatGacggcttgtatcaacagttt	9	9	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41590875	A	A	41590875	1	1	133	0	1	0	0	0	0	0	0	0	4555	1305	45	4		4	DHX8	17	41590875	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	651335	41590875	39604335	719	119629											
G6PC3	92579	broad.mit.edu	37	chr17	42153250	42153250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgctggccatggggctgCtgggccccctggactggctg	17	12	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42153250	A	A	42153250	3	1	133	1	0	0	0	0	1	0	0	0	6205	796	28	3	902	3	G6PC3	17	42153250	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	562375	42153250	39041960	720	119630											
SLC4A1	6521	broad.mit.edu	37	chr17	42340294	42340294	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccccagcataacccgcacCgcgggtccctgcagcagagg	12	18	0	1	rs75489266	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42340294	A	A	42340294	1	1	133	0	1	0	0	0	0	0	0	0	14764	667	23	1		1	SLC4A1	17	42340294	5'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	187044	42340294	38854916	721	119631											
MYL4	4635	broad.mit.edu	37	chr17	45291053	45291053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcttatcagtggcctgCtggaggtggccatactgcat	12	12	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45291053	A	A	45291053	1	1	133	0	1	0	0	0	0	0	0	0	10143	812	28	3		3	MYL4	17	45291053	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2950759	45291053	35904157	722	119632											
ITGB3	3690	broad.mit.edu	37	chr17	45363775	45363775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgatgccatcatgcaggCtacagtctgtgatgtgagtt	11	8	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45363775	A	A	45363775	3	1	133	1	0	0	0	0	1	0	0	0	7965	797	28	3	782	3	ITGB3	17	45363775	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	72722	45363775	35831435	723	119633											
TOM1L1	10040	broad.mit.edu	37	chr17	53037910	53037910	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatacataacccttttgctgTgatggctttgtttcagagct	9	8	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53037910	A	A	53037910	1	1	133	0	1	0	0	0	0	0	0	0	16475	1711	59	5		5	TOM1L1	17	53037910	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	7674135	53037910	28157300	724	119634											
SCPEP1	59342	broad.mit.edu	37	chr17	55065245	55065245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaacagctaagtaaaggGctggcaatatcaactctaca	9	9	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55065245	T	T	55065245	1	4	133	0	1	0	0	0	0	0	0	0	14048	1218	42	3		3	SCPEP1	17	55065245	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2027335	55065245	26129965	725	119635											
TEX14	56155	broad.mit.edu	37	chr17	56650541	56650541	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttctcttccctgtgattaCctgggctgagtggagtgctg	12	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56650541	G	G	56650541	5	3	133	1	0	0	0	0	0	0	1	0	15900	521	18	4	883	4	TEX14	17	56650541	Splice_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	1585296	56650541	24544669	726	119636											
TRIM37	4591	broad.mit.edu	37	chr17	57138479	57138479	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatttccatcctaaaagaaGaataatcagtttgagtgtaa	6	7	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57138479	C	C	57138479	1	2	133	0	1	0	0	0	0	0	0	0	16635	957	33	4		4	TRIM37	17	57138479	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	487938	57138479	24056731	727	119637											
ACE	1636	broad.mit.edu	37	chr17	61566523	61566523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtcgggccttgaggaggGtaaagacggaccacagtgtg	16	8	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61566523	T	T	61566523	1	4	133	0	1	0	0	0	0	0	0	0	136	1276	44	3		3	ACE	17	61566523	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	4428044	61566523	19628687	728	119638											
GH1	2688	broad.mit.edu	37	chr17	61995316	61995316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgggcattggctgtgctGcccgggggctctgactacag	17	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61995316	T	T	61995316	1	4	133	0	1	0	0	0	0	0	0	0	6431	1334	46	3		3	GH1	17	61995316	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	428793	61995316	19199894	729	119639											
SMURF2	64750	broad.mit.edu	37	chr17	62543649	62543649	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatggtttacaaaatatcTccacagaccccacgctgaca	5	14	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62543649	C	C	62543649	1	2	133	0	1	0	0	0	0	0	0	0	14934	1566	54	5		5	SMURF2	17	62543649	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	548333	62543649	18651561	730	119640											
BPTF	2186	broad.mit.edu	37	chr17	65882262	65882262	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagaacctaacaagacatGtgagagcagtaacactagtg	10	7	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65882262	A	A	65882262	1	1	133	0	1	0	0	0	0	0	0	0	1504	1377	48	4		4	BPTF	17	65882262	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	3338613	65882262	15312948	731	119641											
ABCA5	23461	broad.mit.edu	37	chr17	67283904	67283904	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcagtatctgtgtgaaaaGaggtgaagaagggcagggaa	16	4	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67283904	C	C	67283904	1	2	133	0	1	0	0	0	0	0	0	0	35	957	33	4		4	ABCA5	17	67283904	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1401642	67283904	13911306	732	119642											
MAP2K6	5608	broad.mit.edu	37	chr17	67520947	67520947	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcttataacaactcacttGgcagctggtgctacccccat	7	14	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67520947	C	C	67520947	1	2	133	0	1	0	0	0	0	0	0	0	9333	1363	47	4		4	MAP2K6	17	67520947	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	237043	67520947	13674263	733	119643											
KIF19	124602	broad.mit.edu	37	chr17	72347062	72347062	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgtccagggtttggggGgacaaggagagtgggtttag	20	3	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72347062	A	A	72347062	1	1	133	0	1	0	0	0	0	0	0	0	8352	1247	43	4		4	KIF19	17	72347062	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	4826115	72347062	8848148	734	119644											
CASKIN2	57513	broad.mit.edu	37	chr17	73497241	73497241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatgtgcttggtggaggCgctgggggtgctgcagcaag	19	7	0	1	rs146703288		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73497241	A	A	73497241	3	1	133	1	0	0	0	0	1	0	0	0	2693	768	27	3	83	3	CASKIN2	17	73497241	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1150179	73497241	7697969	735	119645											
RNF157	114804	broad.mit.edu	37	chr17	74150404	74150404	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttcctctataacatcAtttccctaggacagaaggaa	5	12	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74150404	G	G	74150404	2	3	133	1	0	0	0	0	0	0	0	1	13565	214	8	5		5	RNF157	17	74150404	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	653163	74150404	7044806	736	119646											
CARD14	79092	broad.mit.edu	37	chr17	78175572	78175572	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagcctcagagcccttgttCaaggcagtcctggaggacac	12	12	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78175572	G	G	78175572	3	3	133	1	0	0	0	0	1	0	0	0	2672	825	29	4	2096	4	CARD14	17	78175572	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	4025168	78175572	3019638	737	119647											
ARL16	339231	broad.mit.edu	37	chr17	79650870	79650870	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcattggatagttctcacCttcggacttctcattggttc	7	11	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79650870	A	A	79650870	1	1	133	1	0	0	0	0	0	0	0	0	934	696	24	2		2	ARL16	17	79650870	Translation_Start_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	1475298	79650870	1544340	738	119648											
EPB41L3	23136	broad.mit.edu	37	chr18	5395092	5395092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtcaatgtctgcatcccCcgtgatgactattcgcttct	8	12	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5395092	A	A	5395092	3	1	133	1	0	0	0	0	1	0	0	0	5196	623	22	2	144	2	EPB41L3	18	5395092	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08		5395092	72682156	739	119649											
EPB41L3	23136	broad.mit.edu	37	chr18	5443878	5443878	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttagcagggtccaaccaaTtctgaaaaggaaatgacatt	8	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5443878	C	C	5443878	3	2	133	1	0	0	0	0	1	0	0	0	5196	1507	52	5	2847	5	EPB41L3	18	5443878	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	48786	5443878	72633370	740	119650											
SLC14A2	8170	broad.mit.edu	37	chr18	43249369	43249369	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgactttgtacctggcagCcacgggccactacaaccttt	9	13	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43249369	G	G	43249369	3	3	133	1	0	0	0	0	1	0	0	0	14510	739	26	4	2193	4	SLC14A2	18	43249369	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	37805491	43249369	34827879	741	119651											
MBD1	4152	broad.mit.edu	37	chr18	47802004	47802004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggacacatttccactggCgcctgagaccagggcgggga	15	12	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47802004	A	A	47802004	3	1	133	1	0	0	0	0	1	0	0	0	9434	768	27	3	1289	3	MBD1	18	47802004	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	4552635	47802004	30275244	742	119652											
SERPINB5	5268	broad.mit.edu	37	chr18	61166612	61166612	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggccgtgagagctgggcCggtagccctcccttattgcc	15	13	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61166612	A	A	61166612	1	1	133	0	1	0	0	0	0	0	0	0	14217	667	23	1		1	SERPINB5	18	61166612	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	13364608	61166612	16910636	743	119653											
SERPINB4	6318	broad.mit.edu	37	chr18	61305132	61305132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgacctccacaaaggCcttgtgtaggactttagata	9	10	1	2	rs144633926	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61305132	A	A	61305132	3	1	133	1	0	0	0	0	1	0	0	0	14216	739	26	3	182	3	SERPINB4	18	61305132	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	138520	61305132	16772116	744	119654											
CCDC102B	79839	broad.mit.edu	37	chr18	66721318	66721318	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagaggtctctggatgaaGagaaagaaagaaatgaaaac	11	5	1	6			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66721318	T	T	66721318	4	4	133	1	0	0	0	0	0	1	0	0	2763	943	33	3	1512	3	CCDC102B	18	66721318	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	5416186	66721318	11355930	745	119655											
ZNF516	9658	broad.mit.edu	37	chr18	74154561	74154561	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgctccgcagcaggacTctgccgctgtcggcctgcga	13	15	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74154561	G	G	74154561	3	3	133	1	0	0	0	0	1	0	0	0	18087	1548	54	5	3062	5	ZNF516	18	74154561	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	7433243	74154561	3922687	746	119656											
CTDP1	9150	broad.mit.edu	37	chr18	77455261	77455261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaggatgcagccacccGgttgtcatgaaaggcctgtg	14	9	1	1	rs139441883		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77455261	T	T	77455261	2	4	133	1	0	0	0	0	0	0	0	1	4036	1103	39	1		1	CTDP1	18	77455261	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	3300700	77455261	621987	747	119657											
STK11	6794	broad.mit.edu	37	chr19	1207120	1207120	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaggaggtgctggactcgGagacgctgtgcaggagggcc	19	8	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1207120	T	T	1207120	4	4	133	1	0	0	0	0	0	1	0	0	15405	1175	41	3	210	3	STK11	19	1207120	Nonsense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08		1207120	57921863	748	119658											
MBD3	53615	broad.mit.edu	37	chr19	1578464	1578464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacgggccagctcctccaCgtgcgccagcatgtcggcca	12	17	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1578464	A	A	1578464	3	1	133	1	0	0	0	0	1	0	0	0	9436	536	19	3	128	3	MBD3	19	1578464	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	371344	1578464	57550519	749	119659											
SAFB2	9667	broad.mit.edu	37	chr19	5612565	5612565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtacctggctccaaaaggGattcttcaatgtcctattta	7	10	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5612565	T	T	5612565	3	4	133	1	0	0	0	0	1	0	0	0	13918	1174	41	3	2305	3	SAFB2	19	5612565	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	4034101	5612565	53516418	750	119660											
TMEM146	257062	broad.mit.edu	37	chr19	5766178	5766178	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catccagaagtaagtatgttGaggccgggcaccatggctca	12	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5766178	C	C	5766178	1	2	133	0	1	0	0	0	0	0	0	0	16183	1305	45	4		4	TMEM146	19	5766178	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	153613	5766178	53362805	751	119661											
TUBB4	10382	broad.mit.edu	37	chr19	6495433	6495433	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcggccatcttcaggccGcggggcgggatgtcgcacac	16	14	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6495433	A	A	6495433	2	1	133	1	0	0	0	0	0	0	0	1	16884	1074	38	4		4	TUBB4	19	6495433	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	729255	6495433	52633550	752	119662											
EMR1	2015	broad.mit.edu	37	chr19	6937694	6937694	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctccctgcaggtgctggtcGagggaggtgccggcctcttg	17	12	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6937694	A	A	6937694	1	1	133	0	1	0	0	0	0	0	0	0	5146	1073	37	4		4	EMR1	19	6937694	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	442261	6937694	52191289	753	119663											
ANGPTL4	51129	broad.mit.edu	37	chr19	8438541	8438541	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctatctcctttcagccccatCggtggctcaaagacctgacc	7	16	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8438541	T	T	8438541	1	4	133	0	1	0	0	0	0	0	0	0	616	899	31	4		4	ANGPTL4	19	8438541	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1500847	8438541	50690442	754	119664											
MUC16	94025	broad.mit.edu	37	chr19	9013855	9013855	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtacttacatgtagggctGgggagggaggatggagtccc	18	6	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9013855	T	T	9013855	2	4	133	1	0	0	0	0	0	0	0	1	10067	1335	47	2		2	MUC16	19	9013855	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	575314	9013855	50115128	755	119665											
MUC16	94025	broad.mit.edu	37	chr19	9084723	9084723	+	Frame_Shift_Del	DEL	G	-	-													gaagaagaactgctatctgaGgggagctcatttgttttccg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9084723	-	-	9084723	7	5	133	1	0	1	0	1	0	0	0	0	10067	987	35	0	36767	0	MUC16	19	9084723	Frame_Shift_Del	DEL	G	TCGA-49-4487-01A-21D-1855-08	70868	9084723	50044260	756	119666											
ILF3	3609	broad.mit.edu	37	chr19	10787707	10787707	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattagagagaccctgacatCccaggtgaaatcacttccgg	9	11	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10787707	T	T	10787707	1	4	133	0	1	0	0	0	0	0	0	0	7782	870	30	4		4	ILF3	19	10787707	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1702984	10787707	48341276	757	119667											
ILF3	3609	broad.mit.edu	37	chr19	10787726	10787726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggtgaaatcacttccGggtcatcatactcaagacgt	8	12	4	2	rs113871773		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10787726	T	T	10787726	1	4	133	0	1	0	0	0	0	0	0	0	7782	1131	39	1		1	ILF3	19	10787726	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	19	10787726	48341257	758	119668											
ILF3	3609	broad.mit.edu	37	chr19	10794136	10794136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctagaaaagcttttccCtgacacccctctcgcccttg	6	17	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10794136	A	A	10794136	3	1	133	1	0	0	0	0	1	0	0	0	7782	681	24	2	1835	2	ILF3	19	10794136	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	6410	10794136	48334847	759	119669											
DNM2	1785	broad.mit.edu	37	chr19	10916669	10916669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacccctctgcagtctcccGctctaccctgggggcgggag	12	17	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10916669	T	T	10916669	1	4	133	0	1	0	0	0	0	0	0	0	4712	1102	38	3		3	DNM2	19	10916669	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	122533	10916669	48212314	760	119670											
RGL3	57139	broad.mit.edu	37	chr19	11527319	11527319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaagctcagatcttgtaCcgctgtcttcttgatctcta	8	10	5	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11527319	A	A	11527319	3	1	133	1	0	0	0	0	1	0	0	0	13386	507	18	3	1820	3	RGL3	19	11527319	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	610650	11527319	47601664	761	119671											
ZNF439	90594	broad.mit.edu	37	chr19	11978327	11978327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacactggacacaaggcatGtgaatgtcaggaatatggac	12	7	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11978327	T	T	11978327	3	4	133	1	0	0	0	0	1	0	0	0	18038	1377	48	3	453	3	ZNF439	19	11978327	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	451008	11978327	47150656	762	119672											
ZNF20	7568	broad.mit.edu	37	chr19	12246306	12246306	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattgccttgtcttgcgagaGaaaattaccttagatttctc	7	9	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12246306	A	A	12246306	1	1	133	0	1	0	0	0	0	0	0	0	17887	957	33	4		4	ZNF20	19	12246306	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	267979	12246306	46882677	763	119673											
MAST1	22983	broad.mit.edu	37	chr19	12975596	12975596	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaggaatgcctcccttttTatgcgggcccatttcctggc	11	12	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12975596	C	C	12975596	1	2	133	0	1	0	0	0	0	0	0	0	9416	1769	61	5		5	MAST1	19	12975596	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	729290	12975596	46153387	764	119674											
OR10H5	284433	broad.mit.edu	37	chr19	15905246	15905246	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtggccatctgccaccccCtgcgttacaacgtgctcatg	9	16	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15905246	T	T	15905246	2	4	133	1	0	0	0	0	0	0	0	1	11003	680	24	4		4	OR10H5	19	15905246	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	2929650	15905246	43223737	765	119675											
ZNF208	7757	broad.mit.edu	37	chr19	22157095	22157095	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccagtatgaattaccttAtgtttagtaaggattgagaa	8	5	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22157095	T	T	22157095	3	4	133	1	0	0	0	0	1	0	0	0	17892	446	16	5	3105	5	ZNF208	19	22157095	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	6251849	22157095	36971888	766	119676											
DPY19L3	147991	broad.mit.edu	37	chr19	32902281	32902281	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttttctaatattaaggtAtggagtttctttgaccattg	9	4	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32902281	G	G	32902281	1	3	133	0	1	0	0	0	0	0	0	0	4782	464	16	5		5	DPY19L3	19	32902281	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	10745186	32902281	26226702	767	119677											
ANKRD27	84079	broad.mit.edu	37	chr19	33110134	33110134	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccagggccgccaaggcctCccctccccagcccttcctct	8	23	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33110134	G	G	33110134	1	3	133	0	1	0	0	0	0	0	0	0	655	870	30	4		4	ANKRD27	19	33110134	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	207853	33110134	26018849	768	119678											
ZNF599	148103	broad.mit.edu	37	chr19	35258315	35258315	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggtttgggaacaggatgCcctgtgcatggagaaacaaa	13	7	1	1	rs147712651		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35258315	T	T	35258315	2	4	133	1	0	0	0	0	0	0	0	1	18156	753	26	4		4	ZNF599	19	35258315	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	2148181	35258315	23870668	769	119679											
NPHS1	4868	broad.mit.edu	37	chr19	36326473	36326473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaagtgttgggattaCaggcgtgagcgactgagctt	13	9	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36326473	A	A	36326473	1	1	133	0	1	0	0	0	0	0	0	0	10677	493	17	3		3	NPHS1	19	36326473	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1068158	36326473	22802510	770	119680											
ZFP14	57677	broad.mit.edu	37	chr19	36831713	36831713	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactccttacattcataggGtttctcaccaaaatgaattt	4	10	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36831713	A	A	36831713	3	1	133	1	0	0	0	0	1	0	0	0	17765	1261	44	4	590	4	ZFP14	19	36831713	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	505240	36831713	22297270	771	119681											
ZNF260	339324	broad.mit.edu	37	chr19	37005662	37005662	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacattcaaatggtttttctCcagtatgaattttctcatgc	5	8	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37005662	G	G	37005662	3	3	133	1	0	0	0	0	1	0	0	0	17928	855	30	4	763	4	ZNF260	19	37005662	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	173949	37005662	22123321	772	119682											
RYR1	6261	broad.mit.edu	37	chr19	38997148	38997148	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaaaattaccacaacaCgtggggacggaagaagaagc	13	8	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38997148	G	G	38997148	3	3	133	1	0	0	0	0	1	0	0	0	13879	536	19	4	8876	4	RYR1	19	38997148	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	1991486	38997148	20131835	773	119683											
RYR1	6261	broad.mit.edu	37	chr19	39001357	39001357	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcctctatttcttgtccActccggctaaagtgctgggc	9	13	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39001357	G	G	39001357	3	3	133	1	0	0	0	0	1	0	0	0	13879	159	6	5	9296	5	RYR1	19	39001357	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	4209	39001357	20127626	774	119684											
RYR1	6261	broad.mit.edu	37	chr19	39034477	39034477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacgcagtggtgggattcCtgcacgtgttcgcccacatg	15	11	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39034477	A	A	39034477	3	1	133	1	0	0	0	0	1	0	0	0	13879	680	24	2	12320	2	RYR1	19	39034477	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	33120	39034477	20094506	775	119685											
TIMM50	92609	broad.mit.edu	37	chr19	39973856	39973856	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaactctgtcatttgtaagGatgtctctctccccatctgg	7	12	6	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39973856	T	T	39973856	1	4	133	0	1	0	0	0	0	0	0	0	16036	1189	41	3		3	TIMM50	19	39973856	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	939379	39973856	19155127	776	119686											
CLC	1178	broad.mit.edu	37	chr19	40225731	40225731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgccaggggattgagaGtgggtgagagaggcagggcc	19	8	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40225731	A	A	40225731	1	1	133	0	1	0	0	0	0	0	0	0	3487	1044	36	4		4	CLC	19	40225731	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	251875	40225731	18903252	777	119687											
TGFB1	7040	broad.mit.edu	37	chr19	41854260	41854260	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcagacgcagctctgcCcgggagagcaacacgggttc	13	14	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41854260	T	T	41854260	2	4	133	1	0	0	0	0	0	0	0	1	15939	610	22	4		4	TGFB1	19	41854260	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1628529	41854260	17274723	778	119688											
POU2F2	5452	broad.mit.edu	37	chr19	42603794	42603794	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagacaaggggaaatacaCagggtgagggggaggggaag	20	3	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42603794	A	A	42603794	1	1	133	0	1	0	0	0	0	0	0	0	12368	493	17	3		3	POU2F2	19	42603794	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	749534	42603794	16525189	779	119689											
MEGF8	1954	broad.mit.edu	37	chr19	42854214	42854214	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgagttctcaacctggGctccaaacccttactttcag	7	14	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42854214	T	T	42854214	1	4	133	0	1	0	0	0	0	0	0	0	9556	1218	42	3		3	MEGF8	19	42854214	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	250420	42854214	16274769	780	119690											
LIPE	3991	broad.mit.edu	37	chr19	42912283	42912283	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggccacacctaggggtcAgaaggggtgtcagggagccc	18	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42912283	G	G	42912283	1	3	133	0	1	0	0	0	0	0	0	0	8894	203	7	5		5	LIPE	19	42912283	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	58069	42912283	16216700	781	119691											
PSG1	5669	broad.mit.edu	37	chr19	43349541	43349541	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcatctcccacctgtcatCccacgcgagtccttgaaagc	8	16	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43349541	T	T	43349541	1	4	133	0	1	0	0	0	0	0	0	0	12759	870	30	4		4	PSG1	19	43349541	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	437258	43349541	15779442	782	119692											
PSG6	5675	broad.mit.edu	37	chr19	43414671	43414671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagggactgagaggcctgGcctctggccacttgtatttg	15	9	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43414671	T	T	43414671	1	4	133	0	1	0	0	0	0	0	0	0	12765	1218	42	3		3	PSG6	19	43414671	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	65130	43414671	15714312	783	119693											
PSG6	5675	broad.mit.edu	37	chr19	43529212	43529212	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagtttaaaagtaatgctaGgaggtggagagagcatcagt	14	3	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43529212	C	C	43529212	1	2	133	0	1	0	0	0	0	0	0	0	12765	1015	35	4		4	PSG6	19	43529212	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	114541	43529212	15599771	784	119694											
PSG6	5675	broad.mit.edu	37	chr19	43601551	43601551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattcccctgtgtggcaccCttgatttctccatgagcatt	8	12	1	3	rs149650882	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43601551	A	A	43601551	1	1	133	0	1	0	0	0	0	0	0	0	12765	696	24	2		2	PSG6	19	43601551	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	72339	43601551	15527432	785	119695											
PSG5	5673	broad.mit.edu	37	chr19	43679369	43679369	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgctgggatccacttaccaGagacttcgactgtcatggat	10	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43679369	C	C	43679369	3	2	133	1	0	0	0	0	1	0	0	0	12764	942	33	4	53	4	PSG5	19	43679369	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	77818	43679369	15449614	786	119696											
PSG4	5672	broad.mit.edu	37	chr19	43702175	43702175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcagggtgactgggtcaCtgcggctggcactcactggg	16	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43702175	A	A	43702175	3	1	133	1	0	0	0	0	1	0	0	0	12763	565	20	3	592	3	PSG4	19	43702175	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	22806	43702175	15426808	787	119697											
LYPD5	284348	broad.mit.edu	37	chr19	44301984	44301984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggactgagaaattgcctGgaggtgggcaaagcagtgag	17	6	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44301984	A	A	44301984	1	1	133	0	1	0	0	0	0	0	0	0	9201	1363	47	4		4	LYPD5	19	44301984	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	599809	44301984	14826999	788	119698											
APOE	348	broad.mit.edu	37	chr19	45412464	45412465	+	Missense_Mutation	DNP	CC	AA	AA													ggtggagaaggtgcaggctgCcgtgggcaccagcgccgccc							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	45412465	AA	AA	45412464	3	1	133	1	0	0	0	0	1	0	0	0	804	739	26	3	921	3	APOE	19	45412464	Missense_Mutation	DNP	CC	TCGA-49-4487-01A-21D-1855-08	1110480	45412464	13716519	789	119699											
APOC2	344	broad.mit.edu	37	chr19	45452505	45452505	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgaagggagaggagtAacagccagaccccccatcag	13	11	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45452505	T	T	45452505	4	4	133	1	0	0	0	0	0	0	0	0	800	369	13	5	315	5	APOC2	19	45452505	Nonstop_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08	40041	45452505	13676478	790	119700											
CCDC61	729440	broad.mit.edu	37	chr19	46519634	46519634	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagccaaggaaaggaagcaGagagagatccagatgaagtc	13	6	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46519634	C	C	46519634	3	2	133	1	0	0	0	0	1	0	0	0	2860	933	33	4	1169	4	CCDC61	19	46519634	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1067129	46519634	12609349	791	119701											
CARD8	22900	broad.mit.edu	37	chr19	48733993	48733993	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacagcagtgagacggcacgCaccccagcggcccccacagc	11	18	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48733993	G	G	48733993	1	3	133	0	1	0	0	0	0	0	0	0	2677	725	25	4		4	CARD8	19	48733993	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2214359	48733993	10394990	792	119702											
PLEKHA4	57664	broad.mit.edu	37	chr19	49351253	49351253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccacccagacctgccagCgtgtcttccaccatccacag	9	18	1	1	rs148488396		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49351253	A	A	49351253	2	1	133	1	0	0	0	0	0	0	0	1	12153	755	27	3		3	PLEKHA4	19	49351253	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	617260	49351253	9777730	793	119703											
TRPM4	54795	broad.mit.edu	37	chr19	49671385	49671385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtgggggctgtctcctGggcctcggcctgcctgccat	17	13	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49671385	T	T	49671385	1	4	133	0	1	0	0	0	0	0	0	0	16713	1363	47	2		2	TRPM4	19	49671385	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	320132	49671385	9457598	794	119704											
ALDH16A1	126133	broad.mit.edu	37	chr19	49967301	49967301	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggtaaccatgtgacctgGgcgtgggggctgctgcctgc	18	10	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49967301	A	A	49967301	1	1	133	0	1	0	0	0	0	0	0	0	488	1247	43	4		4	ALDH16A1	19	49967301	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	295916	49967301	9161682	795	119705											
CPT1C	126129	broad.mit.edu	37	chr19	50204052	50204052	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctgaggctgcttctgtcCtaccacggctggcttcttga	11	14	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50204052	G	G	50204052	2	3	133	1	0	0	0	0	0	0	0	1	3865	668	24	4		4	CPT1C	19	50204052	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	236751	50204052	8924931	796	119706											
KLK2	3817	broad.mit.edu	37	chr19	51381196	51381196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcccctccactccatcCtccatctggcctcagtgggt	6	19	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51381196	A	A	51381196	1	1	133	0	1	0	0	0	0	0	0	0	8475	696	24	2		2	KLK2	19	51381196	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1177144	51381196	7747787	797	119707											
KLK9	284366	broad.mit.edu	37	chr19	51506892	51506892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaaggctgggggccgacCcctctgctcccctaaatcct	11	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51506892	A	A	51506892	1	1	133	0	1	0	0	0	0	0	0	0	8482	638	22	2		2	KLK9	19	51506892	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	125696	51506892	7622091	798	119708											
KLK11	11012	broad.mit.edu	37	chr19	51530735	51530735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgtgagacctctgccCgatgacttccagtcccgcag	11	15	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51530735	A	A	51530735	2	1	133	1	0	0	0	0	0	0	0	1	8470	639	23	1		1	KLK11	19	51530735	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	23843	51530735	7598248	799	119709											
SIGLEC7	27036	broad.mit.edu	37	chr19	51650594	51650594	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgagtgatatgggcgtctCcacacccagcatccagctgg	13	12	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51650594	A	A	51650594	1	1	133	0	1	0	0	0	0	0	0	0	14426	870	30	3		3	SIGLEC7	19	51650594	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	119859	51650594	7478389	800	119710											
SIGLEC12	89858	broad.mit.edu	37	chr19	52000183	52000183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctccatgcctgtatccCccacgcccactgctggcctt	7	20	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52000183	T	T	52000183	3	4	133	1	0	0	0	0	1	0	0	0	14421	623	22	4	245	4	SIGLEC12	19	52000183	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	349589	52000183	7128800	801	119711											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52146749	52146749	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggacagctcagccccaccTggaactcaggagcttcctgg	11	15	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52146749	A	A	52146749	1	1	133	0	1	0	0	0	0	0	0	0	14422	1595	55	5		5	SIGLEC14	19	52146749	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	146566	52146749	6982234	802	119712											
FPR2	2358	broad.mit.edu	37	chr19	52272055	52272055	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggcaatgggcttgtgatCtgggtggctggattccggat	17	7	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52272055	G	G	52272055	3	3	133	1	0	0	0	0	1	0	0	0	6099	903	32	4	146	4	FPR2	19	52272055	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	125306	52272055	6856928	803	119713											
ZNF649	65251	broad.mit.edu	37	chr19	52394602	52394602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccacattcactgcaccCgtatggtttctctcctttgt	5	14	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52394602	A	A	52394602	3	1	133	1	0	0	0	0	1	0	0	0	18191	652	23	1	734	1	ZNF649	19	52394602	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	122547	52394602	6734381	804	119714											
ZNF649	65251	broad.mit.edu	37	chr19	52399800	52399800	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccaacttggtgagggcatCaggtttgccggcttgatacc	12	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52399800	T	T	52399800	3	4	133	1	0	0	0	0	1	0	0	0	18191	826	29	4	1362	4	ZNF649	19	52399800	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5198	52399800	6729183	805	119715											
ZNF578	147660	broad.mit.edu	37	chr19	52978557	52978557	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaccacttacatttattAacgtgagttttcacaccaga	4	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52978557	C	C	52978557	1	2	133	0	1	0	0	0	0	0	0	0	18137	377	13	5		5	ZNF578	19	52978557	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	578757	52978557	6150426	806	119716											
ZNF415	55786	broad.mit.edu	37	chr19	53612605	53612605	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacttacctgacgtacagtCatgtgtgagccatgattcaa	9	9	2	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53612605	A	A	53612605	3	1	133	1	0	0	0	0	1	0	0	0	18019	826	29	3	978	3	ZNF415	19	53612605	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	634048	53612605	5516378	807	119717											
LILRB3	11025	broad.mit.edu	37	chr19	54721148	54721148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtaaggaacgtggtgggGgtgggggaggcctgggggcc	25	5	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54721148	T	T	54721148	1	4	133	0	1	0	0	0	0	0	0	0	8864	1247	43	2		2	LILRB3	19	54721148	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1108543	54721148	4407835	808	119718											
LILRA1	11024	broad.mit.edu	37	chr19	55112042	55112042	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagatgctctcgtttacGgtgctgggcacaagggttgg	17	7	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55112042	A	A	55112042	1	1	133	0	1	0	0	0	0	0	0	0	8856	1131	39	4		4	LILRA1	19	55112042	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	390894	55112042	4016941	809	119719											
LILRB1	10859	broad.mit.edu	37	chr19	55143933	55143933	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtgtttctaagaagccatCactctcagtgcagccaggtc	10	11	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55143933	A	A	55143933	4	1	133	1	0	0	0	0	0	1	0	0	8862	838	29	3	698	3	LILRB1	19	55143933	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	31891	55143933	3985050	810	119720											
LILRB1	10859	broad.mit.edu	37	chr19	55146786	55146786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccagccaggagggagatGggggccccgaagtttccgta	16	10	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55146786	T	T	55146786	1	4	133	0	1	0	0	0	0	0	0	0	8862	1363	47	2		2	LILRB1	19	55146786	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2853	55146786	3982197	811	119721											
LILRB4	11006	broad.mit.edu	37	chr19	55177730	55177730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacgtcctccaggggctgCcgagccagagcccaaggacg	13	16	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55177730	A	A	55177730	3	1	133	1	0	0	0	0	1	0	0	0	8865	739	26	3	944	3	LILRB4	19	55177730	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	30944	55177730	3951253	812	119722											
LILRB4	11006	broad.mit.edu	37	chr19	55179365	55179365	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatgtgacctacgcccaGctgcacagctttaccctcag	9	15	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55179365	A	A	55179365	2	1	133	1	0	0	0	0	0	0	0	1	8865	962	34	4		4	LILRB4	19	55179365	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	1635	55179365	3949618	813	119723											
KIR2DL3	3804	broad.mit.edu	37	chr19	55270415	55270415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcagagtgaatgatccaCgacttggaacccccaggtag	12	10	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55270415	A	A	55270415	1	1	133	0	1	0	0	0	0	0	0	0	8388	551	19	3		3	KIR2DL3	19	55270415	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	91050	55270415	3858568	814	119724											
KIR2DL1	3802	broad.mit.edu	37	chr19	55287049	55287049	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggagggatcagggcacaGgatggccgacagggcacctc	18	10	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55287049	C	C	55287049	1	2	133	0	1	0	0	0	0	0	0	0	8387	1015	35	4		4	KIR2DL1	19	55287049	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	16634	55287049	3841934	815	119725											
NLRP2	55655	broad.mit.edu	37	chr19	55493713	55493713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgtatggtcctgcagGccttgggaaaaccacgctgg	15	10	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55493713	T	T	55493713	3	4	133	1	0	0	0	0	1	0	0	0	10572	1203	42	3	665	3	NLRP2	19	55493713	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	206664	55493713	3635270	816	119726											
C19orf51	352909	broad.mit.edu	37	chr19	55670878	55670878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccagccaggatgttcccCaccctccaccccactgactc	5	22	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55670878	A	A	55670878	1	1	133	0	1	0	0	0	0	0	0	0	1952	609	21	2		2	C19orf51	19	55670878	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	177165	55670878	3458105	817	119727											
SAPS1	22870	broad.mit.edu	37	chr19	55751268	55751268	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcccactgctcctgctgctCgctgggcagctctgcttagg	11	15	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55751268	A	A	55751268	4	1	133	1	0	0	0	0	0	1	0	0	13948	893	31	3	1204	3	SAPS1	19	55751268	Nonsense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	80390	55751268	3377715	818	119728											
NLRP9	338321	broad.mit.edu	37	chr19	56228067	56228068	+	Intron	INS	-	A	A													gcacgcttcagaaatctccgINSaacgtgcttcccgcagacca					rs117307800	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56228068	A	A	56228067	6	5	133	0	1	1	1	0	0	0	0	0	10579	1073	37	0		0	NLRP9	19	56228067	Intron	INS	-	TCGA-49-4487-01A-21D-1855-08	476799	56228067	2900916	819	119729											
PEG3	5178	broad.mit.edu	37	chr19	57327815	57327815	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggactgaccaggaataaaGgtttcctcacacactttacc	8	11	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57327815	T	T	57327815	2	4	133	1	0	0	0	0	0	0	0	1	11814	987	35	2		2	PEG3	19	57327815	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	1099748	57327815	1801168	820	119730											
ZNF256	10172	broad.mit.edu	37	chr19	58455223	58455223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtcaatagtcctcttGtgaagacacatctgactctg	9	10	4	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58455223	T	T	58455223	1	4	133	0	1	0	0	0	0	0	0	0	17925	1392	48	3		3	ZNF256	19	58455223	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1127408	58455223	673760	821	119731											
ZSCAN1	284312	broad.mit.edu	37	chr19	58551840	58551840	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggtatctctggactcggtCgaaccccaggactggagttt	12	11	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58551840	T	T	58551840	2	4	133	1	0	0	0	0	0	0	0	1	18355	871	31	4		4	ZSCAN1	19	58551840	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	96617	58551840	577143	822	119732											
DEFB127	140850	broad.mit.edu	37	chr20	138186	138186	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttctggaaagcctggccAtggggctcttcatgatcatt	10	11	5	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138186	C	C	138186	3	2	133	1	0	0	0	0	1	0	0	0	4452	231	8	5	3	5	DEFB127	20	138186	Missense_Mutation	SNP	A	TCGA-49-4487-01A-21D-1855-08		138186	62887334	823	119733											
UBOX5	22888	broad.mit.edu	37	chr20	3102805	3102805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggaaagagcccctttattCcagagctcctgggccacaac	10	13	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3102805	A	A	3102805	3	1	133	1	0	0	0	0	1	0	0	0	17020	856	30	3	1157	3	UBOX5	20	3102805	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2964619	3102805	59922715	824	119734											
SPTLC3	55304	broad.mit.edu	37	chr20	13145412	13145412	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcaggttttagaagcTcttgatgaaatgggtgatct	11	5	3	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13145412	G	G	13145412	2	3	133	1	0	0	0	0	0	0	0	1	15243	1538	54	5		5	SPTLC3	20	13145412	Silent	SNP	T	TCGA-49-4487-01A-21D-1855-08	10042607	13145412	49880108	825	119735											
ESF1	51575	broad.mit.edu	37	chr20	13756763	13756763	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcgtcatcacctgaagctCtaccaacacttgtaatttca	4	13	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13756763	A	A	13756763	3	1	133	1	0	0	0	0	1	0	0	0	5293	913	32	3	1812	3	ESF1	20	13756763	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	611351	13756763	49268757	826	119736											
BPIL1	80341	broad.mit.edu	37	chr20	31609550	31609550	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcttggccatgggaattgCcctccctggtgtggtcaacc	11	13	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31609550	G	G	31609550	3	3	133	1	0	0	0	0	1	0	0	0	1500	739	26	4	1334	4	BPIL1	20	31609550	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	17852787	31609550	31415970	827	119737											
C20orf185	359710	broad.mit.edu	37	chr20	31652244	31652244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttatagggtcgttctcgCccccactttcccacgcaggc	10	16	1	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31652244	A	A	31652244	1	1	133	0	1	0	0	0	0	0	0	0	2119	754	26	3		3	C20orf185	20	31652244	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	42694	31652244	31373276	828	119738											
LBP	3929	broad.mit.edu	37	chr20	37005423	37005423	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agacatttctgctctcagctCcgggggtgaggtgtgcctgg	15	10	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37005423	A	A	37005423	1	1	133	0	1	0	0	0	0	0	0	0	8723	870	30	3		3	LBP	20	37005423	3'UTR	SNP	C	TCGA-49-4487-01A-21D-1855-08	5353179	37005423	26020097	829	119739											
TOP1	7150	broad.mit.edu	37	chr20	39746848	39746848	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatcctttcttataaccGtgccaatcgagctgttgcaa	8	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39746848	A	A	39746848	3	1	133	1	0	0	0	0	1	0	0	0	16487	1145	40	4	1932	4	TOP1	20	39746848	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2741425	39746848	23278672	830	119740											
CHD6	84181	broad.mit.edu	37	chr20	40161981	40161981	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcactccagtacctcCtcctccactgtcctccatcc	2	21	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40161981	T	T	40161981	3	4	133	1	0	0	0	0	1	0	0	0	3360	690	24	4	8025	4	CHD6	20	40161981	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	415133	40161981	22863539	831	119741											
PTPRT	11122	broad.mit.edu	37	chr20	40710730	40710730	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatgattctaaagctacatCagtaggagtagggatcagct	11	6	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40710730	G	G	40710730	1	3	133	0	1	0	0	0	0	0	0	0	12920	841	29	4		4	PTPRT	20	40710730	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	548749	40710730	22314790	832	119742											
SERINC3	10955	broad.mit.edu	37	chr20	43142612	43142613	+	Missense_Mutation	DNP	CC	AA	AA													agcataaatgaggcgagtcaCcgtggaattcttactgttag							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	43142613	AA	AA	43142612	3	1	133	1	0	0	0	0	1	0	0	0	14194	507	18	3	1348	3	SERINC3	20	43142612	Missense_Mutation	DNP	CC	TCGA-49-4487-01A-21D-1855-08	2431882	43142612	19882908	833	119743											
RIMS4	140730	broad.mit.edu	37	chr20	43384672	43384672	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcttccccactgtgggGgagagccccgtcctcctgtt	11	15	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43384672	A	A	43384672	1	1	133	0	1	0	0	0	0	0	0	0	13481	1247	43	4		4	RIMS4	20	43384672	3'UTR	SNP	G	TCGA-49-4487-01A-21D-1855-08	242060	43384672	19640848	834	119744											
ZNF335	63925	broad.mit.edu	37	chr20	44582429	44582429	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgccagggtgatctgCggtaggtcaggagggcctag	18	9	2	1	rs145737287		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44582429	A	A	44582429	2	1	133	1	0	0	0	0	0	0	0	1	17978	755	27	3		3	ZNF335	20	44582429	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	1197757	44582429	18443091	835	119745											
ZNF335	63925	broad.mit.edu	37	chr20	44590736	44590736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtgcacagcggcgtgcCgaatgacgtccttccggtag	15	12	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44590736	A	A	44590736	3	1	133	1	0	0	0	0	1	0	0	0	17978	652	23	1	2485	1	ZNF335	20	44590736	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	8307	44590736	18434784	836	119746											
CDH22	64405	broad.mit.edu	37	chr20	44869576	44869576	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggatcaccttgatcccatcCcccacccccagggcccacag	8	20	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44869576	T	T	44869576	1	4	133	0	1	0	0	0	0	0	0	0	3137	638	22	4		4	CDH22	20	44869576	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	278840	44869576	18155944	837	119747											
ARFGEF2	10564	broad.mit.edu	37	chr20	47630428	47630428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacctttgaaaagcactgGtggcaggacctgttcagaat	10	10	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47630428	T	T	47630428	3	4	133	1	0	0	0	0	1	0	0	0	855	1270	44	3	4228	3	ARFGEF2	20	47630428	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2760852	47630428	15395092	838	119748											
B4GALT5	9334	broad.mit.edu	37	chr20	48252783	48252783	+	3'UTR	DEL	A	-	-													gtgtagaccctcccccctccAaaaaaaaatctcatcggact							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48252783	-	-	48252783	6	5	133	0	1	1	0	1	0	0	0	0	1279	145	5	0		0	B4GALT5	20	48252783	3'UTR	DEL	A	TCGA-49-4487-01A-21D-1855-08	622355	48252783	14772737	839	119749											
PCK1	5105	broad.mit.edu	37	chr20	56140241	56140241	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagtgggattagagcacTcttcgtcactcttatgtctc	10	9	4	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56140241	C	C	56140241	1	2	133	0	1	0	0	0	0	0	0	0	11675	1566	54	5		5	PCK1	20	56140241	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	7887458	56140241	6885279	840	119750											
PSMA7	5688	broad.mit.edu	37	chr20	60715998	60715998	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtctcttcctcgaacaccAacctttaattaagatccaca	3	13	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60715998	T	T	60715998	2	4	133	1	0	0	0	0	0	0	0	1	12778	117	5	5		5	PSMA7	20	60715998	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	4575757	60715998	2309522	841	119751											
OSBPL2	9885	broad.mit.edu	37	chr20	60859328	60859328	+	Intron	DEL	G	-	-													tggggtcccagggaacctttGggccccaccaggagagatga							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60859328	-	-	60859328	6	5	133	0	1	1	0	1	0	0	0	0	11372	1363	47	0		0	OSBPL2	20	60859328	Intron	DEL	G	TCGA-49-4487-01A-21D-1855-08	143330	60859328	2166192	842	119752											
OSBPL2	9885	broad.mit.edu	37	chr20	60864347	60864347	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccacccacggactgccgcCtgcgccctgacatccgcggc	11	20	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60864347	T	T	60864347	2	4	133	1	0	0	0	0	0	0	0	1	11372	680	24	4		4	OSBPL2	20	60864347	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	5019	60864347	2161173	843	119753											
C20orf166	128826	broad.mit.edu	37	chr20	61167750	61167750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcattctctcagccccagCcccacagtgctccagtgtgt	9	16	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61167750	A	A	61167750	3	1	133	1	0	0	0	0	1	0	0	0	2117	739	26	3	230	3	C20orf166	20	61167750	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	303403	61167750	1857770	844	119754											
COL9A3	1299	broad.mit.edu	37	chr20	61459369	61459369	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaatgctcctcccccggGtcctgggtatgtacaggtgg	14	11	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61459369	T	T	61459369	1	4	133	0	1	0	0	0	0	0	0	0	3741	1276	44	3		3	COL9A3	20	61459369	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	291619	61459369	1566151	845	119755											
DIDO1	11083	broad.mit.edu	37	chr20	61526555	61526555	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcatttactcaaataatattCctatatctgtcaatacagag	3	8	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61526555	G	G	61526555	1	3	133	0	1	0	0	0	0	0	0	0	4562	870	30	4		4	DIDO1	20	61526555	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	67186	61526555	1498965	846	119756											
ZNF512B	57473	broad.mit.edu	37	chr20	62592741	62592741	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacacagcagacagcggtacTtccctgccaggtgggccccc	12	16	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62592741	G	G	62592741	3	3	133	1	0	0	0	0	1	0	0	0	18084	1609	56	5	338	5	ZNF512B	20	62592741	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	1066186	62592741	432779	847	119757											
TPTE	7179	broad.mit.edu	37	chr21	10998232	10998232	+	RNA	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtatggtttcctttttctCtttttgacaccatctgttcc	5	11	2	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10998232	G	G	10998232	1	3	133	0	1	0	0	0	0	0	0	0	16554	928	32	4		4	TPTE	21	10998232	RNA	SNP	C	TCGA-49-4487-01A-21D-1855-08		10998232	37131663	848	119758											
TPTE	7179	broad.mit.edu	37	chr21	10998277	10998277	+	RNA	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actcccttagtttcatcattCacagcttcccgctcaggact	5	15	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10998277	T	T	10998277	1	4	133	0	1	0	0	0	0	0	0	0	16554	841	29	4		4	TPTE	21	10998277	RNA	SNP	C	TCGA-49-4487-01A-21D-1855-08	45	10998277	37131618	849	119759											
JAM2	58494	broad.mit.edu	37	chr21	27066137	27066137	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtgacaagaagtgatgCggggaaatatcgttgtgaag	14	3	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27066137	T	T	27066137	3	4	133	1	0	0	0	0	1	0	0	0	8013	768	27	4	325	4	JAM2	21	27066137	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	16067860	27066137	21063758	850	119760											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212681	28212681	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgccatccgcccacgGgaagtgtttggtttgacaca	13	11	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28212681	C	C	28212681	3	2	133	1	0	0	0	0	1	0	0	0	255	1232	43	4	1344	4	ADAMTS1	21	28212681	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1146544	28212681	19917214	851	119761											
ADAMTS5	11096	broad.mit.edu	37	chr21	28302123	28302123	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacagatagcttatgatgtAatatgaatcctcctttatca	5	7	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28302123	G	G	28302123	1	3	133	0	1	0	0	0	0	0	0	0	269	377	13	5		5	ADAMTS5	21	28302123	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	89442	28302123	19827772	852	119762											
GRIK1	2897	broad.mit.edu	37	chr21	31066121	31066121	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgacccatttgcacaaagatGcccgctttaaaagagggcag	10	11	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31066121	A	A	31066121	1	1	133	0	1	0	0	0	0	0	0	0	6839	1334	46	4		4	GRIK1	21	31066121	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	2763998	31066121	17063774	853	119763											
CLDN8	9073	broad.mit.edu	37	chr21	31587816	31587816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagaaatctctgatgatgGcattggcaacccagctcaca	8	10	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31587816	T	T	31587816	3	4	133	1	0	0	0	0	1	0	0	0	3523	1203	42	3	253	3	CLDN8	21	31587816	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	521695	31587816	16542079	854	119764											
KRTAP19-7	337974	broad.mit.edu	37	chr21	31933420	31933420	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatttcaagtatttattcaAtagaatccagaagaccagta	5	6	2	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31933420	G	G	31933420	2	3	133	1	0	0	0	0	0	0	0	1	8605	108	4	5		5	KRTAP19-7	21	31933420	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	345604	31933420	16196475	855	119765											
KRTAP8-1	337879	broad.mit.edu	37	chr21	32185435	32185435	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccatagcccactggagagTaggtgctgccatagccacag	12	12	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32185435	A	A	32185435	3	1	133	1	0	0	0	0	1	0	0	0	8644	1638	57	5	91	5	KRTAP8-1	21	32185435	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	252015	32185435	15944460	856	119766											
TIAM1	7074	broad.mit.edu	37	chr21	32638252	32638252	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gattaaaagatggaaatcttCtaagagcaaagtcatgcact	8	6	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32638252	G	G	32638252	1	3	133	0	1	0	0	0	0	0	0	0	16013	928	32	4		4	TIAM1	21	32638252	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	452817	32638252	15491643	857	119767											
ITSN1	6453	broad.mit.edu	37	chr21	35183319	35183319	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaacccggctggcttggagGagaattaaaaggaaagacag	14	6	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35183319	C	C	35183319	3	2	133	1	0	0	0	0	1	0	0	0	7996	1174	41	4	2438	4	ITSN1	21	35183319	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2545067	35183319	12946576	858	119768											
PSMG1	8624	broad.mit.edu	37	chr21	40550484	40550484	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaggagaaggaaggctGccggtggattctgaggtttt	17	4	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40550484	A	A	40550484	2	1	133	1	0	0	0	0	0	0	0	1	12817	1306	46	4		4	PSMG1	21	40550484	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	5367165	40550484	7579411	859	119769											
MX2	4600	broad.mit.edu	37	chr21	42752078	42752078	+	Frame_Shift_Del	DEL	G	-	-													tggagaaagagatacacaaaGgtgggcccacgtcattctga							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42752078	-	-	42752078	7	5	133	1	0	1	0	1	0	0	0	0	10092	1014	35	0	587	0	MX2	21	42752078	Frame_Shift_Del	DEL	G	TCGA-49-4487-01A-21D-1855-08	2201594	42752078	5377817	860	119770											
ABCG1	9619	broad.mit.edu	37	chr21	43705992	43705992	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccttccttttttccagctTtacgtcctgagtcaaggaca	6	13	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43705992	C	C	43705992	2	2	133	1	0	0	0	0	0	0	0	1	68	1828	64	5		5	ABCG1	21	43705992	Silent	SNP	T	TCGA-49-4487-01A-21D-1855-08	953914	43705992	4423903	861	119771											
PDE9A	5152	broad.mit.edu	37	chr21	44151935	44151935	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtctgctgagagaccactGagggacagacgggttgtggg	17	8	1	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44151935	A	A	44151935	2	1	133	1	0	0	0	0	0	0	0	1	11749	1277	45	4		4	PDE9A	21	44151935	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	445943	44151935	3977960	862	119772											
FTCD	10841	broad.mit.edu	37	chr21	47571634	47571634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaccaaagtcgggcgcCcagtcggcctgctggagctg	16	13	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47571634	A	A	47571634	3	1	133	1	0	0	0	0	1	0	0	0	6141	624	22	2	1191	2	FTCD	21	47571634	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3419699	47571634	558261	863	119773											
MCM3AP	8888	broad.mit.edu	37	chr21	47695345	47695345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaaaacttaaaacacacaCacacattacaaaagaaaaga	2	8	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47695345	T	T	47695345	1	4	133	0	1	0	0	0	0	0	0	0	9481	493	17	4		4	MCM3AP	21	47695345	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	123711	47695345	434550	864	119774											
MICAL3	57553	broad.mit.edu	37	chr22	18347536	18347536	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacatgaaaaaggagtccaGagggttttgggccacttgtt	13	7	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18347536	C	C	18347536	1	2	133	0	1	0	0	0	0	0	0	0	9664	933	33	4		4	MICAL3	22	18347536	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08		18347536	32957030	865	119775											
ZNF74	7625	broad.mit.edu	37	chr22	20749693	20749693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcgggttggggtcttccCgaagccaggtccaaggtgag	15	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20749693	A	A	20749693	2	1	133	1	0	0	0	0	0	0	0	1	18256	639	23	1		1	ZNF74	22	20749693	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	2402157	20749693	30554873	866	119776											
ZNF280A	129025	broad.mit.edu	37	chr22	22869861	22869861	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccaccccaacatagatcaGatctggatcttcatcatcct	4	15	5	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22869861	C	C	22869861	3	2	133	1	0	0	0	0	1	0	0	0	17940	933	33	4	1538	4	ZNF280A	22	22869861	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	2120168	22869861	28434705	867	119777											
MYO18B	84700	broad.mit.edu	37	chr22	26423257	26423257	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgaacgcaagaccaaagtGgacttcgatgacttcctccc	8	13	0	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26423257	T	T	26423257	2	4	133	1	0	0	0	0	0	0	0	1	10160	1335	47	2		2	MYO18B	22	26423257	Silent	SNP	G	TCGA-49-4487-01A-21D-1855-08	3553396	26423257	24881309	868	119778											
NCF4	4689	broad.mit.edu	37	chr22	37268330	37268330	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctataggaactcagtgagTgttctctccttccctcctta	6	12	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37268330	G	G	37268330	1	3	133	0	1	0	0	0	0	0	0	0	10313	1711	59	5		5	NCF4	22	37268330	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	10845073	37268330	14036236	869	119779											
CACNA1I	8911	broad.mit.edu	37	chr22	40059639	40059639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaggccagcgtggtctgCactgctgcctgggccctctg	14	15	2	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40059639	A	A	40059639	1	1	133	0	1	0	0	0	0	0	0	0	2572	725	25	3		3	CACNA1I	22	40059639	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	2791309	40059639	11244927	870	119780											
PMM1	5372	broad.mit.edu	37	chr22	41974915	41974915	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagggagcggatggcagctCagaggacctgctgtgtgcca	18	9	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41974915	G	G	41974915	1	3	133	0	1	0	0	0	0	0	0	0	12231	841	29	4		4	PMM1	22	41974915	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	1915276	41974915	9329651	871	119781											
SEPT3	55964	broad.mit.edu	37	chr22	42385435	42385435	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtggggctgtgtcggagacGagaggtagcagcctcttggc	18	8	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42385435	A	A	42385435	1	1	133	0	1	0	0	0	0	0	0	0	14178	1073	37	4		4	SEPT3	22	42385435	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	410520	42385435	8919131	872	119782											
KIAA1644	85352	broad.mit.edu	37	chr22	44681232	44681232	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgagccaaacactatggcgAgagtgatggcgtattctcca	11	9	1	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44681232	T	T	44681232	1	4	133	0	1	0	0	0	0	0	0	0	8320	319	11	5		5	KIAA1644	22	44681232	Intron	SNP	A	TCGA-49-4487-01A-21D-1855-08	2295797	44681232	6623334	873	119783											
UPK3A	7380	broad.mit.edu	37	chr22	45689282	45689283	+	Intron	DNP	GG	TT	TT													tcagcagtggggtcctccgaGgcaggggacagcccggaagg							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	45689283	TT	TT	45689282	1	4	133	0	1	0	0	0	0	0	0	0	17136	1015	35	2		2	UPK3A	22	45689282	Intron	DNP	GG	TCGA-49-4487-01A-21D-1855-08	1008050	45689282	5615284	874	119784											
CHKB	1120	broad.mit.edu	37	chr22	51019830	51019830	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcaggagtacaggagccctGaggaggctcctgactcaccg	13	13	2	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51019830	C	C	51019830	1	2	133	0	1	0	0	0	0	0	0	0	3379	1305	45	4		4	CHKB	22	51019830	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	5330548	51019830	284736	875	119785											
MXRA5	25878	broad.mit.edu	37	chrX	3240552	3240552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacatctctttcataccCtttttaatcagtaaggtgtc	6	9	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3240552	A	A	3240552	3	1	133	1	0	0	0	0	1	0	0	0	10097	680	24	2	5324	2	MXRA5	23	3240552	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08		3240552	152030008	876	119786											
HCCS	3052	broad.mit.edu	37	chrX	11136729	11136729	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagattttgaagtgggaagcCcttcatgctgcgtaagtatg	13	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11136729	T	T	11136729	2	4	133	1	0	0	0	0	0	0	0	1	7056	610	22	4		4	HCCS	23	11136729	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	7896177	11136729	144133831	877	119787											
TMSL3	7117	broad.mit.edu	37	chrX	12994777	12994777	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatattttattccattgtgGaataccgtgtagaatgttta	7	5	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12994777	T	T	12994777	1	4	133	0	1	0	0	0	0	0	0	0	16382	1189	41	3		3	TMSL3	23	12994777	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	1858048	12994777	142275783	878	119788											
BEND2	139105	broad.mit.edu	37	chrX	18234682	18234682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatggccatcattgccgCctggaaaatttggttgtgtg	14	7	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18234682	A	A	18234682	3	1	133	1	0	0	0	0	1	0	0	0	1403	739	26	3	2280	3	BEND2	23	18234682	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	5239905	18234682	137035878	879	119789											
CXorf27	25763	broad.mit.edu	37	chrX	37850387	37850387	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accgtgagccccacagcgctGagagtgatgtgactcgcttt	12	12	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37850387	A	A	37850387	3	1	133	1	0	0	0	0	1	0	0	0	4138	1291	45	4	297	4	CXorf27	23	37850387	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	19615705	37850387	117420173	880	119790											
RGN	9104	broad.mit.edu	37	chrX	46949284	46949284	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactttgaccaggtggacatTtccaatggtttggattggtc	11	7	0	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46949284	G	G	46949284	3	3	133	1	0	0	0	0	1	0	0	0	13390	1829	64	5	466	5	RGN	23	46949284	Missense_Mutation	SNP	T	TCGA-49-4487-01A-21D-1855-08	9098897	46949284	108321276	881	119791											
ITIH5L	347365	broad.mit.edu	37	chrX	54776442	54776442	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgagtccttcagcagcctCttgcctagaatcacaggcac	10	13	3	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54776442	A	A	54776442	3	1	133	1	0	0	0	0	1	0	0	0	7978	912	32	3	117	3	ITIH5L	23	54776442	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	7827158	54776442	100494118	882	119792											
SLC7A3	84889	broad.mit.edu	37	chrX	70146911	70146911	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggcaaaagtaagatgGcagtattaagaacaaccttt	9	7	0	3			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70146911	A	A	70146911	1	1	133	0	1	0	0	0	0	0	0	0	14812	1218	42	4		4	SLC7A3	23	70146911	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	15370469	70146911	85123649	883	119793											
ZDHHC15	158866	broad.mit.edu	37	chrX	74649886	74649886	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacatctcataattaaactCaaggtttcaccagtattttt	3	9	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74649886	A	A	74649886	1	1	133	0	1	0	0	0	0	0	0	0	17731	841	29	3		3	ZDHHC15	23	74649886	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	4502975	74649886	80620674	884	119794											
POF1B	79983	broad.mit.edu	37	chrX	84614519	84614519	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttaagcaattaacttcTaaagaattatatgttggtaa	6	3	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84614519	A	A	84614519	1	1	133	0	1	0	0	0	0	0	0	0	12277	1537	53	5		5	POF1B	23	84614519	Intron	SNP	T	TCGA-49-4487-01A-21D-1855-08	9964633	84614519	70656041	885	119795											
PCDH11X	27328	broad.mit.edu	37	chrX	91715112	91715112	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actgtggacaatgcctgcatCgttctgcatattgacaatgc	9	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91715112	G	G	91715112	1	3	133	0	1	0	0	0	0	0	0	0	11602	899	31	4		4	PCDH11X	23	91715112	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	7100593	91715112	63555448	886	119796											
PCDH11X	27328	broad.mit.edu	37	chrX	91873602	91873602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacttcaccacagcccacCatcagcacaggcctcagccc	6	20	3	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873602	A	A	91873602	3	1	133	1	0	0	0	0	1	0	0	0	11602	594	21	2	3855	2	PCDH11X	23	91873602	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	158490	91873602	63396958	887	119797											
PCDH19	57526	broad.mit.edu	37	chrX	99663320	99663320	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacttggggctctggcggcaCagcagatcacggtcaatctt	12	12	4	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99663320	G	G	99663320	2	3	133	1	0	0	0	0	0	0	0	1	11608	465	17	4		4	PCDH19	23	99663320	Silent	SNP	C	TCGA-49-4487-01A-21D-1855-08	7789718	99663320	55607240	888	119798											
NXF5	55998	broad.mit.edu	37	chrX	101096645	101096645	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatgccctcagcacacaCcttttggttctcatcatcat	7	13	4	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101096645	A	A	101096645	5	1	133	1	0	0	0	0	0	0	1	0	10881	521	18	3	904	3	NXF5	23	101096645	Splice_Site	SNP	C	TCGA-49-4487-01A-21D-1855-08	1433325	101096645	54173915	889	119799											
NXF3	56000	broad.mit.edu	37	chrX	102339665	102339665	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttactggagagtccatgtGggcaccatgcattgctgcat	11	10	1	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102339665	C	C	102339665	3	2	133	1	0	0	0	0	1	0	0	0	10880	1348	47	4	1492	4	NXF3	23	102339665	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	1243020	102339665	52930895	890	119800											
NRK	203447	broad.mit.edu	37	chrX	105168969	105168969	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaaattgctcagagacAgatggtccaggattgaagag	13	5	1	5			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105168969	C	C	105168969	2	2	133	1	0	0	0	0	0	0	0	1	10750	175	7	5		5	NRK	23	105168969	Silent	SNP	A	TCGA-49-4487-01A-21D-1855-08	2829304	105168969	50101591	891	119801											
GUCY2F	2986	broad.mit.edu	37	chrX	108628439	108628439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagattccatccgagaaGctgtgttcacagtgtctcca	9	11	2	2	rs55735218		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108628439	T	T	108628439	3	4	133	1	0	0	0	0	1	0	0	0	6963	971	34	3	313	3	GUCY2F	23	108628439	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	3459470	108628439	46642121	892	119802											
AMOT	154796	broad.mit.edu	37	chrX	112048227	112048227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattactcagggcctgatctCggatttcgatgtgtcgtctt	10	10	3	1			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112048227	A	A	112048227	3	1	133	1	0	0	0	0	1	0	0	0	582	884	31	3	1558	3	AMOT	23	112048227	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	3419788	112048227	43222333	893	119803											
UTP14A	10813	broad.mit.edu	37	chrX	129040189	129040189	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaagctggctgctgaaatGactgcgaaccggcttgcaga	14	9	0	4			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129040189	T	T	129040189	3	4	133	1	0	0	0	0	1	0	0	0	17222	1290	45	3	5	3	UTP14A	23	129040189	Missense_Mutation	SNP	G	TCGA-49-4487-01A-21D-1855-08	16991962	129040189	26230371	894	119804											
CD40LG	959	broad.mit.edu	37	chrX	135741115	135741115	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccctatacaaagccaatatCcaacattaaactatattttt	1	10	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135741115	G	G	135741115	1	3	133	0	1	0	0	0	0	0	0	0	3046	870	30	4		4	CD40LG	23	135741115	Intron	SNP	C	TCGA-49-4487-01A-21D-1855-08	6700926	135741115	19529445	895	119805											
ARHGEF6	9459	broad.mit.edu	37	chrX	135827292	135827293	+	Intron	DNP	GG	TC	TC													atgcccaaaacaacccggatGgctgtctcaccacatatgga							TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	135827293	TC	TC	135827292	1	4	133	0	1	0	0	0	0	0	0	0	912	1363	47	2		2	ARHGEF6	23	135827292	Intron	DNP	GG	TCGA-49-4487-01A-21D-1855-08	86177	135827292	19443268	896	119806											
ZIC3	7547	broad.mit.edu	37	chrX	136650015	136650015	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccagggaaaggggcgacGccccgcaacggccgctcgaa	16	15	0	0			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136650015	A	A	136650015	1	1	133	0	1	0	0	0	0	0	0	0	17806	1102	38	4		4	ZIC3	23	136650015	Intron	SNP	G	TCGA-49-4487-01A-21D-1855-08	822723	136650015	18620545	897	119807											
MCF2	4168	broad.mit.edu	37	chrX	138680577	138680577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattaccttcaacaataaCtgatatttagtgattcgttg	5	6	1	2			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138680577	A	A	138680577	3	1	133	1	0	0	0	0	1	0	0	0	9471	564	20	3	924	3	MCF2	23	138680577	Missense_Mutation	SNP	C	TCGA-49-4487-01A-21D-1855-08	2030562	138680577	16589983	898	119808											
FBXO2	26232	broad.mit.edu	37	chr1	11710099	11710100	+	Frame_Shift_Ins	INS	-	A	A													accctccagccgtccccaccINSatgctccacgtcacaccagc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11710100	A	A	11710099	7	5	134	1	0	1	1	0	0	0	0	0	5789	594	21	0	482	0	FBXO2	1	11710099	Frame_Shift_Ins	INS	-	TCGA-49-4488-01A-01D-1753-08		11710099	237540522	1	119809											
PRAMEF12	390999	broad.mit.edu	37	chr1	12835158	12835158	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctttaccaggagatgctgcGagaccctgacaactatggtg	11	11	0	3	rs77870074	byFrequency;by1000genomes	TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12835158	A	A	12835158	3	1	134	1	0	0	0	0	1	0	0	0	12529	1059	37	4	150	4	PRAMEF12	1	12835158	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1125059	12835158	236415463	2	119810											
CTRC	11330	broad.mit.edu	37	chr1	15772225	15772225	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacacccgggtgtccgcctAcatcgactggatcaacgagg	11	14	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15772225	G	G	15772225	3	3	134	1	0	0	0	0	1	0	0	0	4061	391	14	5	799	5	CTRC	1	15772225	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	2937067	15772225	233478396	3	119811											
FBLIM1	54751	broad.mit.edu	37	chr1	16096892	16096892	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctggtgatggcctgtgtctCccctaccccagacatctgtg	11	14	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16096892	T	T	16096892	1	4	134	0	1	0	0	0	0	0	0	0	5754	870	30	4		4	FBLIM1	1	16096892	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	324667	16096892	233153729	4	119812											
UBR4	23352	broad.mit.edu	37	chr1	19481480	19481480	+	Frame_Shift_Del	DEL	T	-	-													ctgatggtggctgcgaatgaTttgccttgacaatagctgaa					rs149131327		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19481480	-	-	19481480	7	5	134	1	0	1	0	1	0	0	0	0	17030	1490	52	0	9413	0	UBR4	1	19481480	Frame_Shift_Del	DEL	T	TCGA-49-4488-01A-01D-1753-08	3384588	19481480	229769141	5	119813											
PLA2G2F	64600	broad.mit.edu	37	chr1	20474875	20474875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagtcaccaatccccagCgccccccgcccctccctaga	6	23	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20474875	A	A	20474875	3	1	134	1	0	0	0	0	1	0	0	0	12094	768	27	3	635	3	PLA2G2F	1	20474875	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	993395	20474875	228775746	6	119814											
LDLRAD2	401944	broad.mit.edu	37	chr1	22141121	22141121	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccccggccccggccgacCcgtgcgcccccggctcctac	10	25	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22141121	G	G	22141121	3	3	134	1	0	0	0	0	1	0	0	0	8778	623	22	4	322	4	LDLRAD2	1	22141121	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1666246	22141121	227109500	7	119815											
UBXN11	91544	broad.mit.edu	37	chr1	26624399	26624399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcctggcctccccagccCagtccctccacctctcagac	5	22	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26624399	A	A	26624399	1	1	134	0	1	0	0	0	0	0	0	0	17039	609	21	2		2	UBXN11	1	26624399	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	4483278	26624399	222626222	8	119816											
DNAJC8	22826	broad.mit.edu	37	chr1	28559567	28559567	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcgcctcacgtgattctTacaggtccgctcctctagcc	9	16	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28559567	A	A	28559567	1	1	134	0	1	0	0	0	0	0	0	0	4695	1769	61	5		5	DNAJC8	1	28559567	5'Flank	SNP	T	TCGA-49-4488-01A-01D-1753-08	1935168	28559567	220691054	9	119817											
C1orf94	84970	broad.mit.edu	37	chr1	34666517	34666517	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgaccctgccgcccaagaAacctacatgtccagccgaga	8	16	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34666517	T	T	34666517	3	4	134	1	0	0	0	0	1	0	0	0	2093	14	1	5	1164	5	C1orf94	1	34666517	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	6106950	34666517	214584104	10	119818											
ZMYM4	9202	broad.mit.edu	37	chr1	35863113	35863113	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatggcagaaatgattgcaGaagatgaagagaagaagact	13	3	0	9			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35863113	T	T	35863113	4	4	134	1	0	0	0	0	0	1	0	0	17828	943	33	3	3244	3	ZMYM4	1	35863113	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1196596	35863113	213387508	11	119819											
GRIK3	2899	broad.mit.edu	37	chr1	37271641	37271641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacggagtgtgaggggaCgcgggggtggagccctccct	20	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37271641	A	A	37271641	1	1	134	0	1	0	0	0	0	0	0	0	6841	551	19	3		3	GRIK3	1	37271641	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1408528	37271641	211978980	12	119820											
RSPO1	284654	broad.mit.edu	37	chr1	38078416	38078416	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcatgggcctggaggctGgacagtgtccctaggcaggc	16	11	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38078416	T	T	38078416	1	4	134	0	1	0	0	0	0	0	0	0	13820	1363	47	2		2	RSPO1	1	38078416	3'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	806775	38078416	211172205	13	119821											
MFSD2A	84879	broad.mit.edu	37	chr1	40432222	40432223	+	Intron	DNP	GG	CT	CT													gctgctggaactggggtgctGggatgagctcaaactgacca							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	40432223	CT	CT	40432222	1	2	134	0	1	0	0	0	0	0	0	0	9623	1363	47	4		4	MFSD2A	1	40432222	Intron	DNP	GG	TCGA-49-4488-01A-01D-1753-08	2353806	40432222	208818399	14	119822											
PPIH	10465	broad.mit.edu	37	chr1	43124216	43124216	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggctgcccacacctgcgccGaagggaaactgctcggggct	14	14	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43124216	A	A	43124216	1	1	134	0	1	0	0	0	0	0	0	0	12426	1073	37	4		4	PPIH	1	43124216	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2691994	43124216	206126405	15	119823											
MPL	4352	broad.mit.edu	37	chr1	43818177	43818177	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaatccagcgcctctcctCatctctcccagcccaaggcc	5	19	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43818177	A	A	43818177	1	1	134	0	1	0	0	0	0	0	0	0	9824	841	29	3		3	MPL	1	43818177	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	693961	43818177	205432444	16	119824											
PTPRF	5792	broad.mit.edu	37	chr1	44084920	44084920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggtggggtgggaggtGggggcgcctgtgcctcaagc	24	7	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44084920	T	T	44084920	1	4	134	0	1	0	0	0	0	0	0	0	12909	1363	47	2		2	PTPRF	1	44084920	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	266743	44084920	205165701	17	119825											
PLK3	1263	broad.mit.edu	37	chr1	45268721	45268721	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcactacacgctgcctgccAgcctctcactgcctgcccgg	8	19	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45268721	T	T	45268721	3	4	134	1	0	0	0	0	1	0	0	0	12192	188	7	5	870	5	PLK3	1	45268721	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	1183801	45268721	203981900	18	119826											
NRD1	4898	broad.mit.edu	37	chr1	52303236	52303236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatttttgaataagttgaCttaaaccacagtctatcagt	6	7	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52303236	A	A	52303236	3	1	134	1	0	0	0	0	1	0	0	0	10740	564	20	3	3096	3	NRD1	1	52303236	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	7034515	52303236	196947385	19	119827											
DMRTB1	63948	broad.mit.edu	37	chr1	53932382	53932382	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtggggcactggggggcAacagcaacagttttcttgtc	15	8	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53932382	C	C	53932382	1	2	134	0	1	0	0	0	0	0	0	0	4630	145	5	5		5	DMRTB1	1	53932382	3'UTR	SNP	A	TCGA-49-4488-01A-01D-1753-08	1629146	53932382	195318239	20	119828											
ACOT11	26027	broad.mit.edu	37	chr1	55080315	55080315	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctaagatccccatcctgTggtaggtgttgacagaagag	11	11	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55080315	A	A	55080315	1	1	134	0	1	0	0	0	0	0	0	0	149	1711	59	5		5	ACOT11	1	55080315	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1147933	55080315	194170306	21	119829											
CACHD1	57685	broad.mit.edu	37	chr1	65147015	65147015	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagccacgaagacagaggcAtcagtgagtattcagctgcc	11	11	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65147015	G	G	65147015	3	3	134	1	0	0	0	0	1	0	0	0	2563	217	8	5	3426	5	CACHD1	1	65147015	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	10066700	65147015	184103606	22	119830											
SGIP1	84251	broad.mit.edu	37	chr1	67154804	67154804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggccccctgtgtttccagCcattttaatgctagtttgtt	8	10	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67154804	A	A	67154804	1	1	134	0	1	0	0	0	0	0	0	0	14319	754	26	3		3	SGIP1	1	67154804	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2007789	67154804	182095817	23	119831											
NEGR1	257194	broad.mit.edu	37	chr1	72076749	72076749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaaggctggaggcggcaCacctgcaccttcacatctta	9	13	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72076749	A	A	72076749	3	1	134	1	0	0	0	0	1	0	0	0	10412	478	17	3	328	3	NEGR1	1	72076749	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4921945	72076749	177173872	24	119832											
FPGT	8790	broad.mit.edu	37	chr1	74670891	74670891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacagtccataacttttaGtatctttccagatataccag	4	10	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74670891	T	T	74670891	3	4	134	1	0	0	0	0	1	0	0	0	6097	1029	36	3	1174	3	FPGT	1	74670891	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2594142	74670891	174579730	25	119833											
LHX8	431707	broad.mit.edu	37	chr1	75626493	75626493	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgatccacaaatttctttCtattttgtagctcattcacc	3	11	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75626493	A	A	75626493	1	1	134	0	1	0	0	0	0	0	0	0	8848	928	32	3		3	LHX8	1	75626493	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	955602	75626493	173624128	26	119834											
MSH4	4438	broad.mit.edu	37	chr1	76365199	76365199	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttcagaagtgcctctagaAgggaagtttaaatctgtgac	11	6	3	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76365199	G	G	76365199	1	3	134	0	1	0	0	0	0	0	0	0	9966	87	3	5		5	MSH4	1	76365199	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	738706	76365199	172885422	27	119835											
ASB17	127247	broad.mit.edu	37	chr1	76397599	76397599	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catatcagtgccaggttacaActtctgtcttgaacatagtc	7	10	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76397599	T	T	76397599	3	4	134	1	0	0	0	0	1	0	0	0	1025	40	2	5	521	5	ASB17	1	76397599	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	32400	76397599	172853022	28	119836											
PRKACB	5567	broad.mit.edu	37	chr1	84700881	84700881	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgaagctccattcataCcaaagtttagaggctctgga	10	8	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84700881	A	A	84700881	3	1	134	1	0	0	0	0	1	0	0	0	12604	507	18	3	1191	3	PRKACB	1	84700881	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	8303282	84700881	164549740	29	119837											
LPAR3	23566	broad.mit.edu	37	chr1	85279510	85279510	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagaggaggcctgggtggGccgagaggcatccagagttt	17	10	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85279510	T	T	85279510	1	4	134	0	1	0	0	0	0	0	0	0	8993	1218	42	3		3	LPAR3	1	85279510	3'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	578629	85279510	163971111	30	119838											
HS2ST1	9653	broad.mit.edu	37	chr1	87511243	87511243	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggatccagtgcacaaggCacaagaaacttctttcttgg	11	9	2	1	rs111509951		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87511243	G	G	87511243	1	3	134	0	1	0	0	0	0	0	0	0	7429	725	25	4		4	HS2ST1	1	87511243	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2231733	87511243	161739378	31	119839											
RTCD1	8634	broad.mit.edu	37	chr1	100731827	100731827	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggctcctgcgccccagGcatgaaccaaggtttctgaa	11	13	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100731827	A	A	100731827	1	1	134	0	1	0	0	0	0	0	0	0	13829	1218	42	4		4	RTCD1	1	100731827	5'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	13220584	100731827	148518794	32	119840											
COL11A1	1301	broad.mit.edu	37	chr1	103461610	103461610	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggggaccctgaaatagatGaattaccacttatacgtgta	10	7	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103461610	T	T	103461610	1	4	134	0	1	0	0	0	0	0	0	0	3699	1305	45	3		3	COL11A1	1	103461610	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2729783	103461610	145789011	33	119841											
NTNG1	22854	broad.mit.edu	37	chr1	107867366	107867366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttttttgctggacctcgcCtacgcaatatggcttccctc	8	14	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107867366	A	A	107867366	3	1	134	1	0	0	0	0	1	0	0	0	10799	680	24	2	715	2	NTNG1	1	107867366	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4405756	107867366	141383255	34	119842											
MOV10	4343	broad.mit.edu	37	chr1	113231997	113231997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaactccccagtcagaccGctcccaccccaaccccccct	5	23	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113231997	T	T	113231997	1	4	134	0	1	0	0	0	0	0	0	0	9812	1102	38	3		3	MOV10	1	113231997	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	5364631	113231997	136018624	35	119843											
TBX15	6913	broad.mit.edu	37	chr1	119427378	119427378	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccatgtgcacggacatctGggaggaggagcctggaactg	15	9	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119427378	A	A	119427378	4	1	134	1	0	0	0	0	0	1	0	0	15774	1357	47	4	26	4	TBX15	1	119427378	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	6195381	119427378	129823243	36	119844											
PDE4DIP	9659	broad.mit.edu	37	chr1	144995027	144995027	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacacaagtggtgtaaccCgactccaagccaggactctg	10	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144995027	A	A	144995027	1	1	134	0	1	0	0	0	0	0	0	0	11737	667	23	1		1	PDE4DIP	1	144995027	5'Flank	SNP	C	TCGA-49-4488-01A-01D-1753-08	25567649	144995027	104255594	37	119845											
SEMA6C	10500	broad.mit.edu	37	chr1	151108068	151108068	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccctccaaaggcctcaccGggcagggctgtaggcatcaa	12	14	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151108068	A	A	151108068	3	1	134	1	0	0	0	0	1	0	0	0	14154	1130	39	4	1484	4	SEMA6C	1	151108068	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	6113041	151108068	98142553	38	119846											
PIP5K1A	8394	broad.mit.edu	37	chr1	151204854	151204854	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacttggtaagcatctggAtatcaggacactgtgactcc	9	9	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151204854	G	G	151204854	1	3	134	0	1	0	0	0	0	0	0	0	12034	348	12	5		5	PIP5K1A	1	151204854	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	96786	151204854	98045767	39	119847											
TDRKH	11022	broad.mit.edu	37	chr1	151747033	151747033	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactgccctattctagcagGcaatgccagcgaggctcaaa	9	13	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151747033	A	A	151747033	1	1	134	0	1	0	0	0	0	0	0	0	15859	1218	42	4		4	TDRKH	1	151747033	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	542179	151747033	97503588	40	119848											
S100A11	6282	broad.mit.edu	37	chr1	152005432	152005432	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcccatttgccagatgcAgaaacagactaaaagaggtg	9	8	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152005432	T	T	152005432	1	4	134	0	1	0	0	0	0	0	0	0	13884	203	7	5		5	S100A11	1	152005432	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	258399	152005432	97245189	41	119849											
CD5L	922	broad.mit.edu	37	chr1	157805682	157805682	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcataaacttcttcttgctCacactgagccaatgtatctt	4	11	5	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157805682	A	A	157805682	4	1	134	1	0	0	0	0	0	1	0	0	3057	835	29	3	740	3	CD5L	1	157805682	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	5800250	157805682	91444939	42	119850											
SPTA1	6708	broad.mit.edu	37	chr1	158604187	158604187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttggactttaatttttcGtatttaaaactgtcaggatt	7	5	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158604187	T	T	158604187	1	4	134	0	1	0	0	0	0	0	0	0	15234	1160	40	3		3	SPTA1	1	158604187	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	798505	158604187	90646434	43	119851											
SPTA1	6708	broad.mit.edu	37	chr1	158612763	158612763	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agttgtgctttgagagccttCcacctagaggacggagccaa	12	10	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158612763	T	T	158612763	4	4	134	1	0	0	0	0	0	1	0	0	15234	856	30	4	2897	4	SPTA1	1	158612763	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	8576	158612763	90637858	44	119852											
SPTA1	6708	broad.mit.edu	37	chr1	158648304	158648304	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcttagactgaattaaGggtaggtcaggatggttttc	12	4	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158648304	T	T	158648304	2	4	134	1	0	0	0	0	0	0	0	1	15234	987	35	2		2	SPTA1	1	158648304	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	35541	158648304	90602317	45	119853											
CADM3	57863	broad.mit.edu	37	chr1	159163171	159163171	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaagtgtgaccccatgGggcctctccttcctatcctg	10	14	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159163171	T	T	159163171	1	4	134	0	1	0	0	0	0	0	0	0	2594	1247	43	2		2	CADM3	1	159163171	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	514867	159163171	90087450	46	119854											
FCER1A	2205	broad.mit.edu	37	chr1	159272686	159272686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcctctgttcttgttcCcttggtgtttcaacatgtct	8	10	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159272686	A	A	159272686	1	1	134	0	1	0	0	0	0	0	0	0	5831	638	22	2		2	FCER1A	1	159272686	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	109515	159272686	89977935	47	119855											
ATP1A4	480	broad.mit.edu	37	chr1	160144384	160144384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggagccgttgtggccGtgacaggtgacggggtgaac	18	9	1	3	rs150078418		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160144384	T	T	160144384	3	4	134	1	0	0	0	0	1	0	0	0	1135	1145	40	3	2216	3	ATP1A4	1	160144384	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	871698	160144384	89106237	48	119856											
SLAMF7	57823	broad.mit.edu	37	chr1	160709250	160709250	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcaactcgggaggctctGtgttctcatctaacatttgc	10	11	4	0	rs113404744		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160709250	A	A	160709250	1	1	134	0	1	0	0	0	0	0	0	0	14482	1392	48	4		4	SLAMF7	1	160709250	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	564866	160709250	88541371	49	119857											
LY9	4063	broad.mit.edu	37	chr1	160771649	160771649	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactcctggagggcagcgGcctggagtccatcatcagca	12	14	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160771649	T	T	160771649	1	4	134	0	1	0	0	0	0	0	0	0	9189	1203	42	3		3	LY9	1	160771649	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	62399	160771649	88478972	50	119858											
FCGR3B	2215	broad.mit.edu	37	chr1	161594354	161594354	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgtgtccactgcaaaaAggagtaccatcaccaagcag	9	12	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161594354	G	G	161594354	3	3	134	1	0	0	0	0	1	0	0	0	5842	72	3	5	52	5	FCGR3B	1	161594354	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	822705	161594354	87656267	51	119859											
C1orf129	80133	broad.mit.edu	37	chr1	170914772	170914773	+	Intron	DEL	TG	-	-													agaaggtatttttgtgtataTgtgtgtgtatgagtgacaga							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170914773	-	-	170914772	6	5	134	0	1	1	0	1	0	0	0	0	2016	1479	51	0		0	C1orf129	1	170914772	Intron	DEL	TG	TCGA-49-4488-01A-01D-1753-08	9320418	170914772	78335849	52	119860											
FASLG	356	broad.mit.edu	37	chr1	172635120	172635120	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctggtcaattttgaGgaatctcagacgtttttcgg	9	9	4	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172635120	A	A	172635120	2	1	134	1	0	0	0	0	0	0	0	1	5739	991	35	4		4	FASLG	1	172635120	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	1720348	172635120	76615501	53	119861											
SLC9A11	284525	broad.mit.edu	37	chr1	173505044	173505044	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaactttataagccaaCttctagttctcatataagtt	3	7	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173505044	T	T	173505044	3	4	134	1	0	0	0	0	1	0	0	0	14825	565	20	4	1730	4	SLC9A11	1	173505044	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	869924	173505044	75745577	54	119862											
TNN	63923	broad.mit.edu	37	chr1	175086339	175086339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgacaccaaggcccagaCaggtaaggagcattgttctt	12	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175086339	A	A	175086339	3	1	134	1	0	0	0	0	1	0	0	0	16446	478	17	3	2418	3	TNN	1	175086339	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1581295	175086339	74164282	55	119863											
SEC16B	89866	broad.mit.edu	37	chr1	177937139	177937139	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgactctctgaatttgtccTgggttttgagtaagttgtgc	11	6	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177937139	A	A	177937139	1	1	134	0	1	0	0	0	0	0	0	0	14100	1595	55	5		5	SEC16B	1	177937139	5'UTR	SNP	T	TCGA-49-4488-01A-01D-1753-08	2850800	177937139	71313482	56	119864											
CACNA1E	777	broad.mit.edu	37	chr1	181549920	181549920	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgctgtacaatgtgagtaGagctggtggggacctggaag	17	5	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181549920	C	C	181549920	1	2	134	0	1	0	0	0	0	0	0	0	2568	957	33	4		4	CACNA1E	1	181549920	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3612781	181549920	67700701	57	119865											
CACNA1E	777	broad.mit.edu	37	chr1	181706900	181706900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctggggaatgagcaagGgttggaaattgtccactcct	13	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181706900	T	T	181706900	1	4	134	0	1	0	0	0	0	0	0	0	2568	1247	43	2		2	CACNA1E	1	181706900	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	156980	181706900	67543721	58	119866											
ARPC5	10092	broad.mit.edu	37	chr1	183599587	183599587	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcatatagatttataattcAtaacttaccttttcatgcca	3	8	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183599587	G	G	183599587	1	3	134	0	1	0	0	0	0	0	0	0	978	232	8	5		5	ARPC5	1	183599587	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	1892687	183599587	65651034	59	119867											
RGL1	23179	broad.mit.edu	37	chr1	183871590	183871590	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgtaattataggatcattgAtaattgtgactttatcaccc	6	7	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183871590	G	G	183871590	1	3	134	0	1	0	0	0	0	0	0	0	13384	348	12	5		5	RGL1	1	183871590	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	272003	183871590	65379031	60	119868											
FAM129A	116496	broad.mit.edu	37	chr1	184764303	184764303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcgctgctttgccctccCatctcttcttgttcctcaga	7	17	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184764303	A	A	184764303	3	1	134	1	0	0	0	0	1	0	0	0	5482	594	21	2	195	2	FAM129A	1	184764303	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	892713	184764303	64486318	61	119869											
FAM129A	116496	broad.mit.edu	37	chr1	184792915	184792915	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagagtcggtcagtcggtGatggctacatctgagcatca	12	11	3	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184792915	A	A	184792915	1	1	134	0	1	0	0	0	0	0	0	0	5482	1305	45	4		4	FAM129A	1	184792915	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	28612	184792915	64457706	62	119870											
TPR	7175	broad.mit.edu	37	chr1	186287493	186287493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaacaaaacacaactTtgcagattgtttcttggcta	5	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186287493	A	A	186287493	1	1	134	0	1	0	0	0	0	0	0	0	16540	1856	64	5		5	TPR	1	186287493	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1494578	186287493	62963128	63	119871											
TPR	7175	broad.mit.edu	37	chr1	186294836	186294836	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatattagaattaagtgcAattctagtttagaaaatacc	5	4	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186294836	T	T	186294836	1	4	134	0	1	0	0	0	0	0	0	0	16540	145	5	5		5	TPR	1	186294836	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	7343	186294836	62955785	64	119872											
DENND1B	163486	broad.mit.edu	37	chr1	197514995	197514995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatttatatgtctatcacCtaggaaaatgttttataatt	5	4	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197514995	A	A	197514995	1	1	134	0	1	0	0	0	0	0	0	0	4467	696	24	2		2	DENND1B	1	197514995	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	11220159	197514995	51735626	65	119873											
TNNI1	7135	broad.mit.edu	37	chr1	201382396	201382396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactctgaggctcatgacGggcaatagctcaaagggtat	11	10	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201382396	T	T	201382396	1	4	134	0	1	0	0	0	0	0	0	0	16449	1131	39	1		1	TNNI1	1	201382396	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3867401	201382396	47868225	66	119874											
MYOG	4656	broad.mit.edu	37	chr1	203054889	203054889	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacacaccttacacgcccaCggcaggcactggcctggaca	9	16	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203054889	T	T	203054889	2	4	134	1	0	0	0	0	0	0	0	1	10184	523	19	4		4	MYOG	1	203054889	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	1672493	203054889	46195732	67	119875											
BTG2	7832	broad.mit.edu	37	chr1	203276294	203276294	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctccggctaccgctgcattCgcatcaaccacaagatggac	9	15	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203276294	G	G	203276294	3	3	134	1	0	0	0	0	1	0	0	0	1564	884	31	4	211	4	BTG2	1	203276294	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	221405	203276294	45974327	68	119876											
REN	5972	broad.mit.edu	37	chr1	204128777	204128777	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcccactccttggttggAgtctggtctgggcttccaca	11	13	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204128777	G	G	204128777	1	3	134	0	1	0	0	0	0	0	0	0	13332	319	11	5		5	REN	1	204128777	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	852483	204128777	45121844	69	119877											
DSTYK	25778	broad.mit.edu	37	chr1	205156526	205156526	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatatgtatacaattggtaTagaagtatgagattggtacc	9	3	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205156526	C	C	205156526	1	2	134	0	1	0	0	0	0	0	0	0	4825	1421	49	5		5	DSTYK	1	205156526	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1027749	205156526	44094095	70	119878											
HHAT	55733	broad.mit.edu	37	chr1	210536147	210536147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagctcttcagccagccCagttttgtttagatttgtga	8	10	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210536147	A	A	210536147	1	1	134	0	1	0	0	0	0	0	0	0	7156	609	21	2		2	HHAT	1	210536147	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	5379621	210536147	38714474	71	119879											
KCNK2	3776	broad.mit.edu	37	chr1	215179258	215179258	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgactcctgatgaaaacaTcaccaaatgatgaacccacg	7	11	1	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215179258	A	A	215179258	1	1	134	0	1	0	0	0	0	0	0	0	8136	1450	50	5		5	KCNK2	1	215179258	5'UTR	SNP	T	TCGA-49-4488-01A-01D-1753-08	4643111	215179258	34071363	72	119880											
USH2A	7399	broad.mit.edu	37	chr1	215844561	215844561	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgcatcaaaggtgcaatcTcaggggtctgtatgaatgtc	12	7	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215844561	G	G	215844561	3	3	134	1	0	0	0	0	1	0	0	0	17162	1551	54	5	1758	5	USH2A	1	215844561	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	665303	215844561	33406060	73	119881											
USH2A	7399	broad.mit.edu	37	chr1	215939931	215939931	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctatcaactttattgcctCttccttatttgttatgaagg	5	9	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215939931	A	A	215939931	1	1	134	0	1	0	0	0	0	0	0	0	17162	928	32	3		3	USH2A	1	215939931	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	95370	215939931	33310690	74	119882											
USH2A	7399	broad.mit.edu	37	chr1	216373371	216373371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgtaagtgacagctaCactccttgttgaaccatgca	8	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216373371	A	A	216373371	3	1	134	1	0	0	0	0	1	0	0	0	17162	478	17	3	12437	3	USH2A	1	216373371	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	433440	216373371	32877250	75	119883											
USH2A	7399	broad.mit.edu	37	chr1	216500926	216500926	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtttacaatgcaacatcTgcttacctgtttgtaagtgc	9	8	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216500926	G	G	216500926	1	3	134	0	1	0	0	0	0	0	0	0	17162	1595	55	5		5	USH2A	1	216500926	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	127555	216500926	32749695	76	119884											
USH2A	7399	broad.mit.edu	37	chr1	216538206	216538206	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctagaagatgaatacacgTagatattttaaaatattatt	5	5	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216538206	G	G	216538206	1	3	134	0	1	0	0	0	0	0	0	0	17162	1653	57	5		5	USH2A	1	216538206	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	37280	216538206	32712415	77	119885											
ESRRG	2104	broad.mit.edu	37	chr1	216692774	216692774	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggagaagcctgcatggaaAgatgggcagatcaagttact	14	6	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216692774	G	G	216692774	1	3	134	0	1	0	0	0	0	0	0	0	5304	87	3	5		5	ESRRG	1	216692774	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	154568	216692774	32557847	78	119886											
HHIPL2	79802	broad.mit.edu	37	chr1	222696185	222696185	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttgcactggaagattttcTagcagctttctctgattgtt	10	7	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222696185	A	A	222696185	4	1	134	1	0	0	0	0	0	1	0	0	7161	1530	53	5	245	5	HHIPL2	1	222696185	Nonsense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	6003411	222696185	26554436	79	119887											
HHIPL2	79802	broad.mit.edu	37	chr1	222712016	222712016	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaagtctccaaagatataCaggccattgagatttgggga	11	6	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222712016	A	A	222712016	2	1	134	1	0	0	0	0	0	0	0	1	7161	465	17	3		3	HHIPL2	1	222712016	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	15831	222712016	26538605	80	119888											
CDC42BPA	8476	broad.mit.edu	37	chr1	227333181	227333181	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagaacttcttcacagtgtCatacttacagaattttttaa	4	8	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227333181	A	A	227333181	1	1	134	0	1	0	0	0	0	0	0	0	3102	841	29	3		3	CDC42BPA	1	227333181	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	4621165	227333181	21917440	81	119889											
ABCB10	23456	broad.mit.edu	37	chr1	229675222	229675222	+	Missense_Mutation	SNP	C	A	A													cctccaatgcttattccaacCcagaaagcatacattaggaa							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229675222	A	A	229675222	3	1	134	1	0	0	0	0	1	0	0	0	41	624	22	2	928	2	ABCB10	1	229675222	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2342041	229675222	19575399	82	119890	521	2									
ABCB10	23456	broad.mit.edu	37	chr1	229675224	229675224	+	Missense_Mutation	SNP	A	C	C													tccaatgcttattccaacccAgaaagcatacattaggaagg							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229675224	C	C	229675224	3	2	134	1	0	0	0	0	1	0	0	0	41	188	7	5	930	5	ABCB10	1	229675224	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	2	229675224	19575397	83	119891	521	2									
GNPAT	8443	broad.mit.edu	37	chr1	231410987	231410987	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataatttgcaagtaccttttGagtgaagaagaggaccactt	9	6	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231410987	C	C	231410987	3	2	134	1	0	0	0	0	1	0	0	0	6605	1281	45	4	1814	4	GNPAT	1	231410987	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1735763	231410987	17839634	84	119892											
SIPA1L2	57568	broad.mit.edu	37	chr1	232539169	232539169	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgcctggaacagcaggaggGaggggtccacaggggctcac	17	10	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232539169	A	A	232539169	1	1	134	0	1	0	0	0	0	0	0	0	14443	1189	41	4		4	SIPA1L2	1	232539169	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1128182	232539169	16711452	85	119893											
PCNXL2	80003	broad.mit.edu	37	chr1	233122108	233122108	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagagtgcagggacgtggcCgaggcgtgcaaggagagccg	20	8	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233122108	T	T	233122108	2	4	134	1	0	0	0	0	0	0	0	1	11686	639	23	4		4	PCNXL2	1	233122108	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	582939	233122108	16128513	86	119894											
PCNXL2	80003	broad.mit.edu	37	chr1	233393709	233393709	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaatcaaattacacaaggCaaatggcaaaaaggtgtatt	7	6	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233393709	G	G	233393709	1	3	134	0	1	0	0	0	0	0	0	0	11686	725	25	4		4	PCNXL2	1	233393709	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	271601	233393709	15856912	87	119895											
NID1	4811	broad.mit.edu	37	chr1	236195640	236195640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctccttccatccatccCcaggcctccccctaggcact	5	20	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236195640	A	A	236195640	1	1	134	0	1	0	0	0	0	0	0	0	10509	638	22	2		2	NID1	1	236195640	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2801931	236195640	13054981	88	119896											
RYR2	6262	broad.mit.edu	37	chr1	237608853	237608853	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgtaggcgtagttgtttGatacttcattttcatttctt	7	5	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237608853	C	C	237608853	1	2	134	0	1	0	0	0	0	0	0	0	13880	1305	45	4		4	RYR2	1	237608853	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1413213	237608853	11641768	89	119897											
RYR2	6262	broad.mit.edu	37	chr1	237865347	237865347	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgggaaccagcaagagtaTttacgtggagaggtaagaat	13	4	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237865347	A	A	237865347	3	1	134	1	0	0	0	0	1	0	0	0	13880	1493	52	5	9699	5	RYR2	1	237865347	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	256494	237865347	11385274	90	119898											
FMN2	56776	broad.mit.edu	37	chr1	240371044	240371044	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccggagcaggaatacctcctCcaccccctctacccggagcg	9	19	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240371044	A	A	240371044	3	1	134	1	0	0	0	0	1	0	0	0	6008	855	30	3	2950	3	FMN2	1	240371044	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2505697	240371044	8879577	91	119899											
RGS7	6000	broad.mit.edu	37	chr1	241094038	241094038	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataatctgtgttttccggctCccaacaatttgatggccaaa	7	10	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241094038	A	A	241094038	4	1	134	1	0	0	0	0	0	1	0	0	13419	864	30	3	1151	3	RGS7	1	241094038	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	722994	241094038	8156583	92	119900											
AHCTF1	25909	broad.mit.edu	37	chr1	247025359	247025359	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgatggagagggagatgCtaaaggtgttgatcgaagag	18	2	0	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247025359	G	G	247025359	3	3	134	1	0	0	0	0	1	0	0	0	408	797	28	4	3199	4	AHCTF1	1	247025359	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	5931321	247025359	2225262	93	119901											
VN1R5	317705	broad.mit.edu	37	chr1	247420349	247420349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaatttatgctgataacCaaatattcaagactctgcaa	5	8	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247420349	A	A	247420349	3	1	134	1	0	0	0	0	1	0	0	0	17308	595	21	2	978	2	VN1R5	1	247420349	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	394990	247420349	1830272	94	119902											
NLRP3	114548	broad.mit.edu	37	chr1	247588869	247588869	+	Frame_Shift_Del	DEL	C	-	-													gatatggtgcagtgtgtcctCccaagctcctctcatgctgc					rs149493236		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247588869	-	-	247588869	7	5	134	1	0	1	0	1	0	0	0	0	10573	842	30	0	2134	0	NLRP3	1	247588869	Frame_Shift_Del	DEL	C	TCGA-49-4488-01A-01D-1753-08	168520	247588869	1661752	95	119903											
OR2G3	81469	broad.mit.edu	37	chr1	247769612	247769612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaagccttcagcacctgctCctcccaccttacagtggtga	7	16	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247769612	A	A	247769612	3	1	134	1	0	0	0	0	1	0	0	0	11093	855	30	3	727	3	OR2G3	1	247769612	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	180743	247769612	1481009	96	119904											
OR1C1	26188	broad.mit.edu	37	chr1	247921471	247921471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatattcactaccatttGggggactgtagtcgacgtaa	10	8	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921471	T	T	247921471	3	4	134	1	0	0	0	0	1	0	0	0	11046	1357	47	2	708	2	OR1C1	1	247921471	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	151859	247921471	1329150	97	119905											
TRIM58	25893	broad.mit.edu	37	chr1	248039358	248039358	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtttgcagagcttctcatCagggaggcattactgggagg	16	7	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248039358	T	T	248039358	3	4	134	1	0	0	0	0	1	0	0	0	16656	838	29	4	1050	4	TRIM58	1	248039358	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	117887	248039358	1211263	98	119906											
OR2T8	343172	broad.mit.edu	37	chr1	248084593	248084593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggaagtaaggccatctccCgcgctggctgtggtgcgcag	15	13	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248084593	A	A	248084593	3	1	134	1	0	0	0	0	1	0	0	0	11124	652	23	1	276	1	OR2T8	1	248084593	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	45235	248084593	1166028	99	119907											
OR2L8	391190	broad.mit.edu	37	chr1	248112520	248112520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcatctatggcctatgatCgttacattgctatttgcttt	8	8	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112520	T	T	248112520	3	4	134	1	0	0	0	0	1	0	0	0	11103	884	31	4	363	4	OR2L8	1	248112520	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	27927	248112520	1138101	100	119908											
OR2L8	391190	broad.mit.edu	37	chr1	248112648	248112648	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcacactgtatatgtactCcatattccttattgccgatc	5	12	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112648	T	T	248112648	2	4	134	1	0	0	0	0	0	0	0	1	11103	842	30	4		4	OR2L8	1	248112648	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	128	248112648	1137973	101	119909											
OR2AK2	391191	broad.mit.edu	37	chr1	248129213	248129213	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctcattaaccactttttcTgtgaagttccagctctacta	6	11	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248129213	A	A	248129213	3	1	134	1	0	0	0	0	1	0	0	0	11080	1580	55	5	582	5	OR2AK2	1	248129213	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	16565	248129213	1121408	102	119910											
OR2L13	284521	broad.mit.edu	37	chr1	248246874	248246874	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcatgaactactaaagggaGagaattacaatgtgttaaaa	8	4	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248246874	T	T	248246874	1	4	134	0	1	0	0	0	0	0	0	0	11100	957	33	3		3	OR2L13	1	248246874	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	117661	248246874	1003747	103	119911											
OR2T33	391195	broad.mit.edu	37	chr1	248436843	248436843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacaccacagccagcgcGggagatggccttacttccgg	12	15	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436843	T	T	248436843	3	4	134	1	0	0	0	0	1	0	0	0	11118	1116	39	1	691	1	OR2T33	1	248436843	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	189969	248436843	813778	104	119912											
MYT1L	23040	broad.mit.edu	37	chr2	1843159	1843159	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctgtaggcaggcagagGtgacacactttattgtctgg	12	9	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1843159	T	T	1843159	1	4	134	0	1	0	0	0	0	0	0	0	10201	1276	44	3		3	MYT1L	2	1843159	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08		1843159	241356214	105	119913											
GREB1	9687	broad.mit.edu	37	chr2	11779007	11779007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtaccctgaggaggggaCctttggtcctagtccttatt	13	10	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11779007	A	A	11779007	1	1	134	0	1	0	0	0	0	0	0	0	6826	522	18	3		3	GREB1	2	11779007	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	9935848	11779007	231420366	106	119914											
NT5C1B	93034	broad.mit.edu	37	chr2	18766475	18766475	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccctagcttccccataagCatttcacacgtttttatttg	4	13	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18766475	T	T	18766475	1	4	134	0	1	0	0	0	0	0	0	0	10781	725	25	4		4	NT5C1B	2	18766475	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	6987468	18766475	224432898	107	119915											
APOB	338	broad.mit.edu	37	chr2	21228767	21228767	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatcctgcaatgtcaaggTgtgccttttcttggtcattg	11	8	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21228767	G	G	21228767	3	3	134	1	0	0	0	0	1	0	0	0	787	1696	59	5	2734	5	APOB	2	21228767	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	2462292	21228767	221970606	108	119916											
SNX17	9784	broad.mit.edu	37	chr2	27596060	27596060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctactgagaggaggactgGggagccaagagtgagtgcta	16	7	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27596060	T	T	27596060	1	4	134	0	1	0	0	0	0	0	0	0	15002	1247	43	2		2	SNX17	2	27596060	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	6367293	27596060	215603313	109	119917											
GALNT14	79623	broad.mit.edu	37	chr2	31189075	31189075	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaaggatgcctcacctgcgGatggtcctgagcagcgtgga	15	11	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31189075	T	T	31189075	2	4	134	1	0	0	0	0	0	0	0	1	6274	1164	41	3		3	GALNT14	2	31189075	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	3593015	31189075	212010298	110	119918											
XDH	7498	broad.mit.edu	37	chr2	31572747	31572747	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggcggcaagagactgtgGgggcagggcacaacctaaag	17	8	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31572747	T	T	31572747	1	4	134	0	1	0	0	0	0	0	0	0	17553	1247	43	2		2	XDH	2	31572747	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	383672	31572747	211626626	111	119919											
LTBP1	4052	broad.mit.edu	37	chr2	33442709	33442709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacaaatgccagaaatgcCccaagaaaccatgtaagtaa	6	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33442709	A	A	33442709	3	1	134	1	0	0	0	0	1	0	0	0	9160	623	22	2	1877	2	LTBP1	2	33442709	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1869962	33442709	209756664	112	119920											
EIF2AK2	5610	broad.mit.edu	37	chr2	37349652	37349652	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttatttttagttaccttGaactatttttgctgttctca	4	6	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37349652	C	C	37349652	4	2	134	1	0	0	0	0	0	1	0	0	5037	1294	45	4	615	4	EIF2AK2	2	37349652	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	3906943	37349652	205849721	113	119921											
HNRPLL	92906	broad.mit.edu	37	chr2	38796172	38796172	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaataaaatagtaataacaTcaaaagcaaaagaatgagca	5	4	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38796172	G	G	38796172	1	3	134	0	1	0	0	0	0	0	0	0	7344	1450	50	5		5	HNRPLL	2	38796172	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1446520	38796172	204403201	114	119922											
SLC8A1	6546	broad.mit.edu	37	chr2	40392219	40392219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccaaggaggaaggaagcCctaatgacctactaaagccc	10	11	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40392219	A	A	40392219	1	1	134	0	1	0	0	0	0	0	0	0	14820	638	22	2		2	SLC8A1	2	40392219	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1596047	40392219	202807154	115	119923											
TTC7A	57217	broad.mit.edu	37	chr2	47222242	47222242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtctggtgaggtgtgtGctctagccaggcctgtcatt	14	9	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47222242	T	T	47222242	1	4	134	0	1	0	0	0	0	0	0	0	16838	1334	46	3		3	TTC7A	2	47222242	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	6830023	47222242	195977131	116	119924											
NRXN1	9378	broad.mit.edu	37	chr2	50723056	50723056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttactcttgaggtctaaGttcctggctccggcggtgat	11	11	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50723056	T	T	50723056	3	4	134	1	0	0	0	0	1	0	0	0	10760	1020	36	3	1765	3	NRXN1	2	50723056	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	3500814	50723056	192476317	117	119925											
SPTBN1	6711	broad.mit.edu	37	chr2	54877226	54877226	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttccttggctcttcaaaaGaattgccccaattaagcaca	6	11	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54877226	C	C	54877226	1	2	134	0	1	0	0	0	0	0	0	0	15237	957	33	4		4	SPTBN1	2	54877226	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	4154170	54877226	188322147	118	119926											
CLEC4F	165530	broad.mit.edu	37	chr2	71043709	71043709	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttaaaacctggttctgggtCctcaagtcattgacactatc	7	11	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71043709	G	G	71043709	3	3	134	1	0	0	0	0	1	0	0	0	3548	854	30	4	981	4	CLEC4F	2	71043709	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	16166483	71043709	172155664	119	119927											
C2orf78	388960	broad.mit.edu	37	chr2	74040979	74040979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagaacacagctgtctcttCcatgtctatgacagcccagt	7	13	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74040979	A	A	74040979	3	1	134	1	0	0	0	0	1	0	0	0	2217	855	30	3	479	3	C2orf78	2	74040979	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2997270	74040979	169158394	120	119928											
REG1A	5967	broad.mit.edu	37	chr2	79349080	79349080	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tatatccgtcacaacttcctCctccactgagtgctccattt	4	15	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79349080	G	G	79349080	1	3	134	0	1	0	0	0	0	0	0	0	13318	870	30	4		4	REG1A	2	79349080	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	5308101	79349080	163850293	121	119929											
PROM2	150696	broad.mit.edu	37	chr2	95941743	95941743	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctctacctgctgctggtGcccactgccgggctttgctt	12	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95941743	T	T	95941743	2	4	134	1	0	0	0	0	0	0	0	1	12662	1306	46	3		3	PROM2	2	95941743	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	16592663	95941743	147257630	122	119930											
ZAP70	7535	broad.mit.edu	37	chr2	98341688	98341688	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccgagcgcaaactttactCtggggcgcagaccgacggca	14	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98341688	T	T	98341688	3	4	134	1	0	0	0	0	1	0	0	0	17641	913	32	4	542	4	ZAP70	2	98341688	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2399945	98341688	144857685	123	119931											
REV1	51455	broad.mit.edu	37	chr2	100058763	100058763	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagctttgcagtaatccccAactagacaaacttacaccct	4	15	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100058763	G	G	100058763	1	3	134	0	1	0	0	0	0	0	0	0	13347	145	5	5		5	REV1	2	100058763	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	1717075	100058763	143140610	124	119932											
C2orf40	84417	broad.mit.edu	37	chr2	106694217	106694217	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atcattctctctcttttcctCcagaaatttgaagatgacat	4	10	3	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106694217	G	G	106694217	1	3	134	0	1	0	0	0	0	0	0	0	2187	870	30	4		4	C2orf40	2	106694217	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	6635454	106694217	136505156	125	119933											
CNTNAP5	129684	broad.mit.edu	37	chr2	124783245	124783245	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggattctttaccacgGctgaccagcgttttgacttt	9	9	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124783245	T	T	124783245	2	4	134	1	0	0	0	0	0	0	0	1	3682	1190	42	3		3	CNTNAP5	2	124783245	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	18089028	124783245	118416128	126	119934											
NCKAP5	344148	broad.mit.edu	37	chr2	133483297	133483297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcactattactgccaccGctggcagagtacgtacacat	8	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133483297	T	T	133483297	3	4	134	1	0	0	0	0	1	0	0	0	10318	1078	38	3	121	3	NCKAP5	2	133483297	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	8700052	133483297	109716076	127	119935											
LCT	3938	broad.mit.edu	37	chr2	136570190	136570190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgtaatgcgacagacCcagaaaatcagcagagcctt	12	9	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136570190	A	A	136570190	3	1	134	1	0	0	0	0	1	0	0	0	8765	623	22	2	3783	2	LCT	2	136570190	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	3086893	136570190	106629183	128	119936											
LCT	3938	broad.mit.edu	37	chr2	136594342	136594342	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggcagggagggtctggTggtgcaggatgaccatgggc	20	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136594342	C	C	136594342	3	2	134	1	0	0	0	0	1	0	0	0	8765	1696	59	5	5453	5	LCT	2	136594342	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	24152	136594342	106605031	129	119937											
LRP1B	53353	broad.mit.edu	37	chr2	140997062	140997062	+	Frame_Shift_Del	DEL	G	-	-													ttactaaggtggttatcaaaGtcaccaagaggacgagaggc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140997062	-	-	140997062	7	5	134	1	0	1	0	1	0	0	0	0	9042	1029	36	0	451	0	LRP1B	2	140997062	Frame_Shift_Del	DEL	G	TCGA-49-4488-01A-01D-1753-08	4402720	140997062	102202311	130	119938											
LRP1B	53353	broad.mit.edu	37	chr2	141272306	141272306	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagaaatacatttttgtgCggaacaagcaaattggttcc	8	7	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141272306	T	T	141272306	3	4	134	1	0	0	0	0	1	0	0	0	9042	768	27	4	5778	4	LRP1B	2	141272306	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	275244	141272306	101927067	131	119939											
LRP1B	53353	broad.mit.edu	37	chr2	141607580	141607580	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaattaacagcataaagtTgaataaaagagaaagaatat	6	3	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141607580	A	A	141607580	1	1	134	0	1	0	0	0	0	0	0	0	9042	1827	63	5		5	LRP1B	2	141607580	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	335274	141607580	101591793	132	119940											
KCNJ3	3760	broad.mit.edu	37	chr2	155555721	155555721	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgagacggaggccaccatcgGctatggctaccgatacatca	11	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155555721	C	C	155555721	3	2	134	1	0	0	0	0	1	0	0	0	8122	1203	42	4	436	4	KCNJ3	2	155555721	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	13948141	155555721	87643652	133	119941											
XIRP2	129446	broad.mit.edu	37	chr2	167992309	167992309	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcatattgaaaacatccctCatgacagaaatccctccctc	4	14	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167992309	A	A	167992309	1	1	134	0	1	0	0	0	0	0	0	0	17557	841	29	3		3	XIRP2	2	167992309	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	12436588	167992309	75207064	134	119942											
XIRP2	129446	broad.mit.edu	37	chr2	168108351	168108351	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaaattttcaaaagacGtggcaagagagtggaagagt	12	3	1	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168108351	T	T	168108351	2	4	134	1	0	0	0	0	0	0	0	1	17557	1132	40	3		3	XIRP2	2	168108351	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	116042	168108351	75091022	135	119943											
ZAK	51776	broad.mit.edu	37	chr2	174131278	174131278	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgacttcaagagaagccccAgggacctccaccaacccaac	7	17	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174131278	G	G	174131278	3	3	134	1	0	0	0	0	1	0	0	0	17639	179	7	5	2662	5	ZAK	2	174131278	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	6022927	174131278	69068095	136	119944											
TTN	7273	broad.mit.edu	37	chr2	179435936	179435936	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaattcatattcaacaccttCttcaaggccagttgtcttaa	4	10	5	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179435936	G	G	179435936	3	3	134	1	0	0	0	0	1	0	0	0	16861	922	32	4	33204	4	TTN	2	179435936	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	5304658	179435936	63763437	137	119945											
TTN	7273	broad.mit.edu	37	chr2	179588619	179588619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgacattcatcagaccCagcgacattagcagccacgc	8	15	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179588619	A	A	179588619	3	1	134	1	0	0	0	0	1	0	0	0	16861	594	21	2	83322	2	TTN	2	179588619	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	152683	179588619	63610754	138	119946											
FRZB	2487	broad.mit.edu	37	chr2	183731209	183731209	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagccccgggcacccggagCaggcagagagcagccagggc	17	15	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183731209	A	A	183731209	2	1	134	1	0	0	0	0	0	0	0	1	6125	697	25	3		3	FRZB	2	183731209	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	4142590	183731209	59468164	139	119947											
COL3A1	1281	broad.mit.edu	37	chr2	189864150	189864150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctaggtttaaaaaatgCatttgatttccttctgatca	5	8	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189864150	A	A	189864150	1	1	134	0	1	0	0	0	0	0	0	0	3720	725	25	3		3	COL3A1	2	189864150	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	6132941	189864150	53335223	140	119948											
CYP20A1	57404	broad.mit.edu	37	chr2	204116893	204116893	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataatagtatttattttttGagtattggtgtgtactatct	7	2	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204116893	C	C	204116893	1	2	134	0	1	0	0	0	0	0	0	0	4185	1305	45	4		4	CYP20A1	2	204116893	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	14252743	204116893	39082480	141	119949											
PARD3B	117583	broad.mit.edu	37	chr2	205829880	205829880	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggatttgtttgtagctgatTgctgtgtttgaagaacaaga	12	3	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205829880	G	G	205829880	3	3	134	1	0	0	0	0	1	0	0	0	11538	1800	63	5	238	5	PARD3B	2	205829880	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	1712987	205829880	37369493	142	119950											
VWC2L	402117	broad.mit.edu	37	chr2	215279259	215279259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgcaaagaagtaaaaaaCttctgtgaatatcacgggaa	10	5	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215279259	A	A	215279259	3	1	134	1	0	0	0	0	1	0	0	0	17371	564	20	3	344	3	VWC2L	2	215279259	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	9449379	215279259	27920114	143	119951											
FN1	2335	broad.mit.edu	37	chr2	216290041	216290041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagggaatgtcacaaaactGggtgagagaagacaattcac	11	6	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216290041	A	A	216290041	1	1	134	0	1	0	0	0	0	0	0	0	6020	1363	47	4		4	FN1	2	216290041	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1010782	216290041	26909332	144	119952											
XRCC5	7520	broad.mit.edu	37	chr2	216981433	216981433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtcctgtttggtacagatGgcactgacaatcccctttct	8	11	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216981433	T	T	216981433	3	4	134	1	0	0	0	0	1	0	0	0	17583	1348	47	2	197	2	XRCC5	2	216981433	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	691392	216981433	26217940	145	119953											
SLC11A1	6556	broad.mit.edu	37	chr2	219252294	219252294	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgctccgtagggctgcGgaagctggaagctttttttg	14	8	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219252294	T	T	219252294	3	4	134	1	0	0	0	0	1	0	0	0	14493	1116	39	1	604	1	SLC11A1	2	219252294	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2270861	219252294	23947079	146	119954											
DNPEP	23549	broad.mit.edu	37	chr2	220249104	220249104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgcagggcacagaagCagctgtgcagattgtccagc	12	12	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220249104	A	A	220249104	3	1	134	1	0	0	0	0	1	0	0	0	4719	710	25	3	649	3	DNPEP	2	220249104	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	996810	220249104	22950269	147	119955											
SLC4A3	6508	broad.mit.edu	37	chr2	220496610	220496610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagctcaccaagtagatgGgttgggcagaaggagctggg	17	6	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220496610	T	T	220496610	1	4	134	0	1	0	0	0	0	0	0	0	14769	1247	43	2		2	SLC4A3	2	220496610	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	247506	220496610	22702763	148	119956											
SLC4A3	6508	broad.mit.edu	37	chr2	220498124	220498124	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggcggtgcctaccatggCtgatgacctgggggagccag	18	10	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220498124	T	T	220498124	3	4	134	1	0	0	0	0	1	0	0	0	14769	797	28	4	1521	4	SLC4A3	2	220498124	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1514	220498124	22701249	149	119957											
UGT1A6	54578	broad.mit.edu	37	chr2	234602162	234602162	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaccatctgtgtacctctTcaggggttttccgtgttccc	8	14	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234602162	A	A	234602162	3	1	134	1	0	0	0	0	1	0	0	0	17075	1783	62	5	514	5	UGT1A6	2	234602162	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	14104038	234602162	8597211	150	119958											
COL6A3	1293	broad.mit.edu	37	chr2	238289842	238289842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggtagccggctgaactcGtgaataggttgttacgaaca	12	10	0	2	rs34741387	byFrequency;by1000genomes	TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238289842	T	T	238289842	3	4	134	1	0	0	0	0	1	0	0	0	3733	1145	40	3	8127	3	COL6A3	2	238289842	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	3687680	238289842	4909531	151	119959											
HDAC4	9759	broad.mit.edu	37	chr2	240011772	240011772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagccaggcgggctgccCccgccgagtgcacctcgttc	12	19	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240011772	A	A	240011772	3	1	134	1	0	0	0	0	1	0	0	0	7076	623	22	2	988	2	HDAC4	2	240011772	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1721930	240011772	3187601	152	119960											
OXTR	5021	broad.mit.edu	37	chr3	8794926	8794926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggctgagggggtgggggCaggagaaaggagaaaagggc	23	4	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8794926	A	A	8794926	1	1	134	0	1	0	0	0	0	0	0	0	11432	725	25	3		3	OXTR	3	8794926	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08		8794926	189227504	153	119961											
OXNAD1	92106	broad.mit.edu	37	chr3	16312620	16312620	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatttgaagttaattttcAaagagacccgacctgctgat	8	8	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16312620	T	T	16312620	1	4	134	0	1	0	0	0	0	0	0	0	11427	145	5	5		5	OXNAD1	3	16312620	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	7517694	16312620	181709810	154	119962											
KCNH8	131096	broad.mit.edu	37	chr3	19554470	19554470	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactgatttagtcagagccCaagggaaatggcaacatcaa	9	10	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19554470	T	T	19554470	2	4	134	1	0	0	0	0	0	0	0	1	8108	581	21	4		4	KCNH8	3	19554470	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	3241850	19554470	178467960	155	119963											
ZNF385D	79750	broad.mit.edu	37	chr3	21706480	21706480	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaggaggggctggtggAcggacaagggccgggagagc	21	7	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21706480	T	T	21706480	2	4	134	1	0	0	0	0	0	0	0	1	18004	262	10	5		5	ZNF385D	3	21706480	Silent	SNP	A	TCGA-49-4488-01A-01D-1753-08	2152010	21706480	176315950	156	119964											
RBMS3	27303	broad.mit.edu	37	chr3	29938988	29938989	+	Intron	INS	-	T	T													atgtccaatttacctgcaccINSttaggagatatctttcttgc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29938989	T	T	29938988	6	5	134	0	1	1	1	0	0	0	0	0	13258	696	24	0		0	RBMS3	3	29938988	Intron	INS	-	TCGA-49-4488-01A-01D-1753-08	8232508	29938988	168083442	157	119965											
ARPP21	10777	broad.mit.edu	37	chr3	35778767	35778767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtggggcagtcccaacaGcagccaccacagcagcagcc	12	15	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35778767	T	T	35778767	3	4	134	1	0	0	0	0	1	0	0	0	982	962	34	3	1624	3	ARPP21	3	35778767	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	5839779	35778767	162243663	158	119966											
DCLK3	85443	broad.mit.edu	37	chr3	36763249	36763249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggtcaagaaaagcaaacCataaacctatatgagattac	6	8	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36763249	A	A	36763249	1	1	134	0	1	0	0	0	0	0	0	0	4326	609	21	2		2	DCLK3	3	36763249	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	984482	36763249	161259181	159	119967											
SCN10A	6336	broad.mit.edu	37	chr3	38740129	38740129	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagttggctgtgatgacactCtgctttgcttggtatagact	11	7	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38740129	A	A	38740129	1	1	134	0	1	0	0	0	0	0	0	0	14025	928	32	3		3	SCN10A	3	38740129	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1976880	38740129	159282301	160	119968											
SCN10A	6336	broad.mit.edu	37	chr3	38781172	38781172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagcagtaaaaaatatgGtaaagacctaggagtggaaa	10	4	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38781172	T	T	38781172	3	4	134	1	0	0	0	0	1	0	0	0	14025	1261	44	3	3812	3	SCN10A	3	38781172	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	41043	38781172	159241258	161	119969											
TGM4	7047	broad.mit.edu	37	chr3	44952602	44952603	+	Missense_Mutation	DNP	CC	AA	AA													tattcacgtctttccagtacCctgagttctctatagaggtg							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44952603	AA	AA	44952602	3	1	134	1	0	0	0	0	1	0	0	0	15955	623	22	2	1805	2	TGM4	3	44952602	Missense_Mutation	DNP	CC	TCGA-49-4488-01A-01D-1753-08	6171430	44952602	153069828	162	119970											
UBA7	7318	broad.mit.edu	37	chr3	49848422	49848422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccaggctctcaccagggCacagtcctcaggactgggaa	11	14	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49848422	A	A	49848422	3	1	134	1	0	0	0	0	1	0	0	0	16959	710	25	3	1873	3	UBA7	3	49848422	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4895820	49848422	148174008	163	119971											
FAM3D	131177	broad.mit.edu	37	chr3	58639297	58639297	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggtcccaaaggcagcacAgcttgtcatgtctcctgggt	13	11	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58639297	T	T	58639297	1	4	134	0	1	0	0	0	0	0	0	0	5610	203	7	5		5	FAM3D	3	58639297	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	8790875	58639297	139383133	164	119972											
MAGI1	9223	broad.mit.edu	37	chr3	65347059	65347059	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatttgaaattcatgtacgGattcaccaaatgtttattaa	6	5	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65347059	T	T	65347059	1	4	134	0	1	0	0	0	0	0	0	0	9282	1189	41	3		3	MAGI1	3	65347059	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	6707762	65347059	132675371	165	119973											
PROK2	60675	broad.mit.edu	37	chr3	71830726	71830726	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgcctccaccacattgGgagtccttgtcacaagcctg	8	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71830726	T	T	71830726	2	4	134	1	0	0	0	0	0	0	0	1	12657	1219	43	2		2	PROK2	3	71830726	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	6483667	71830726	126191704	166	119974											
PDZRN3	23024	broad.mit.edu	37	chr3	73651681	73651681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgaaagtaaagcttgcaCtcttaaaacagtaattgact	7	7	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73651681	A	A	73651681	1	1	134	0	1	0	0	0	0	0	0	0	11803	580	20	3		3	PDZRN3	3	73651681	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1820955	73651681	124370749	167	119975											
GABRR3	200959	broad.mit.edu	37	chr3	97731232	97731232	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagggtgtacgcgcagcatGatattctccatagttgtatc	10	9	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97731232	A	A	97731232	2	1	134	1	0	0	0	0	0	0	0	1	6238	1280	45	4		4	GABRR3	3	97731232	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	24079551	97731232	100291198	168	119976											
GPR15	2838	broad.mit.edu	37	chr3	98251936	98251936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagaagattttgccaggagGaggaagaggtctgtgtcact	15	6	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98251936	T	T	98251936	3	4	134	1	0	0	0	0	1	0	0	0	6720	1165	41	3	1061	3	GPR15	3	98251936	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	520704	98251936	99770494	169	119977											
MYH15	22989	broad.mit.edu	37	chr3	108110731	108110731	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgtcctttccaagtggGcaatggtgtcttgcttcttc	9	11	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108110731	A	A	108110731	3	1	134	1	0	0	0	0	1	0	0	0	10128	1203	42	4	494	4	MYH15	3	108110731	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	9858795	108110731	89911699	170	119978											
GRAMD1C	54762	broad.mit.edu	37	chr3	113604334	113604334	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtgaggaggaagatcCtggtgctggatctggatgag	17	7	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113604334	T	T	113604334	1	4	134	0	1	0	0	0	0	0	0	0	6815	696	24	4		4	GRAMD1C	3	113604334	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	5493603	113604334	84418096	171	119979											
FSTL1	11167	broad.mit.edu	37	chr3	120130552	120130552	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggctcataagtgacaagaGgatgcaactccaaccaactg	9	11	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120130552	C	C	120130552	1	2	134	0	1	0	0	0	0	0	0	0	6137	1015	35	4		4	FSTL1	3	120130552	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	6526218	120130552	77891878	172	119980											
PLXND1	23129	broad.mit.edu	37	chr3	129291866	129291866	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagggatcgccccattcCacgccatgccacacttccaa	7	18	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129291866	T	T	129291866	1	4	134	0	1	0	0	0	0	0	0	0	12222	609	21	4		4	PLXND1	3	129291866	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	9161314	129291866	68730564	173	119981											
CPNE4	131034	broad.mit.edu	37	chr3	131254166	131254166	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctctttgccagggcagctGgagatgcctgcagggaagaa	15	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131254166	A	A	131254166	3	1	134	1	0	0	0	0	1	0	0	0	3846	1348	47	4	130	4	CPNE4	3	131254166	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1962300	131254166	66768264	174	119982											
KY	339855	broad.mit.edu	37	chr3	134323159	134323159	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcggagttgcccttggcaaaGatctgcagcttgtgagtgcc	13	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134323159	C	C	134323159	3	2	134	1	0	0	0	0	1	0	0	0	8658	932	33	4	741	4	KY	3	134323159	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	3068993	134323159	63699271	175	119983											
GK5	256356	broad.mit.edu	37	chr3	141889376	141889376	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagtgggccacatttttttCctgaaatccttgattttatt	6	8	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141889376	A	A	141889376	1	1	134	0	1	0	0	0	0	0	0	0	6486	870	30	3		3	GK5	3	141889376	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	7566217	141889376	56133054	176	119984											
PLOD2	5352	broad.mit.edu	37	chr3	145789249	145789249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acataataagctgtactccaCgtgcaattcccatttatatt	4	10	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145789249	A	A	145789249	1	1	134	0	1	0	0	0	0	0	0	0	12197	551	19	3		3	PLOD2	3	145789249	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	3899873	145789249	52233181	177	119985											
CPB1	1360	broad.mit.edu	37	chr3	148558565	148558565	+	Frame_Shift_Del	DEL	G	-	-													ttatgagaagtacaacaagtGggaaacggtatgatgtgcac							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	148558565	-	-	148558565	7	5	134	1	0	1	0	1	0	0	0	0	3828	1357	47	0	379	0	CPB1	3	148558565	Frame_Shift_Del	DEL	G	TCGA-49-4488-01A-01D-1753-08	2769316	148558565	49463865	178	119986											
CP	1356	broad.mit.edu	37	chr3	148927062	148927062	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttctctggttctgagcaGtaggttttaatgttgtcttc	9	7	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148927062	T	T	148927062	4	4	134	1	0	0	0	0	0	1	0	0	3819	1024	36	3	2544	3	CP	3	148927062	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	368497	148927062	49095368	179	119987											
SLITRK3	22865	broad.mit.edu	37	chr3	164907671	164907671	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagcagtaaaatgaacAgaggatagcattgaggaagg	14	3	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164907671	T	T	164907671	2	4	134	1	0	0	0	0	0	0	0	1	14858	175	7	5		5	SLITRK3	3	164907671	Silent	SNP	A	TCGA-49-4488-01A-01D-1753-08	15980609	164907671	33114759	180	119988											
ZBBX	79740	broad.mit.edu	37	chr3	167016239	167016239	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacttctgcaggctatttctTgtaacaactaagaaacaaaa	5	8	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167016239	A	A	167016239	3	1	134	1	0	0	0	0	1	0	0	0	17643	1812	63	5	685	5	ZBBX	3	167016239	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	2108568	167016239	31006191	181	119989											
LRRC31	79782	broad.mit.edu	37	chr3	169574170	169574170	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatccacatgaatgtaacttCagtactttcagatttgaggt	7	7	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169574170	T	T	169574170	2	4	134	1	0	0	0	0	0	0	0	1	9073	813	29	4		4	LRRC31	3	169574170	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	2557931	169574170	28448260	182	119990											
PLD1	5337	broad.mit.edu	37	chr3	171329425	171329425	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctggagtcattttagacCtgaaaacagaagtttccaca	7	10	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171329425	A	A	171329425	1	1	134	0	1	0	0	0	0	0	0	0	12140	696	24	2		2	PLD1	3	171329425	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1755255	171329425	26693005	183	119991											
NAALADL2	254827	broad.mit.edu	37	chr3	175436124	175436124	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgctatatgaattctGccattttgctagcactgata	7	7	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175436124	A	A	175436124	1	1	134	0	1	0	0	0	0	0	0	0	10224	1334	46	4		4	NAALADL2	3	175436124	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	4106699	175436124	22586306	184	119992											
KCNMB3	27094	broad.mit.edu	37	chr3	178977914	178977914	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatgccctaaaggacatgaGgccactgtgtctgcctgctc	10	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178977914	A	A	178977914	1	1	134	0	1	0	0	0	0	0	0	0	8146	1015	35	4		4	KCNMB3	3	178977914	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3541790	178977914	19044516	185	119993											
ECE2	9718	broad.mit.edu	37	chr3	183995649	183995649	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagagaaaccgagcaagGgccagggactccccctcagc	13	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183995649	T	T	183995649	1	4	134	0	1	0	0	0	0	0	0	0	4930	1247	43	2		2	ECE2	3	183995649	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	5017735	183995649	14026781	186	119994											
CHRD	8646	broad.mit.edu	37	chr3	184104734	184104734	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgtttgccctggtgagttCcccgcaggggagtggaggga	17	10	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184104734	T	T	184104734	1	4	134	0	1	0	0	0	0	0	0	0	3403	870	30	4		4	CHRD	3	184104734	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	109085	184104734	13917696	187	119995											
ADIPOQ	9370	broad.mit.edu	37	chr3	186570891	186570891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctattagctctgcccgGtcatgaccaggaaaccacga	9	13	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186570891	T	T	186570891	3	4	134	1	0	0	0	0	1	0	0	0	317	1261	44	3	46	3	ADIPOQ	3	186570891	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2466157	186570891	11451539	188	119996											
TP63	8626	broad.mit.edu	37	chr3	189581917	189581917	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtagtaaacaggcagcatgCagctctaaaaagtggacaga	11	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189581917	G	G	189581917	1	3	134	0	1	0	0	0	0	0	0	0	16516	725	25	4		4	TP63	3	189581917	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	3011026	189581917	8440513	189	119997											
FGF12	2257	broad.mit.edu	37	chr3	192125690	192125690	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaagaagtctggaaatgaGagaagaggggtcagaatgta	15	2	2	6			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192125690	T	T	192125690	1	4	134	0	1	0	0	0	0	0	0	0	5898	957	33	3		3	FGF12	3	192125690	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2543773	192125690	5896740	190	119998											
ATP13A5	344905	broad.mit.edu	37	chr3	193039469	193039469	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaagagaaaagtgttagtaCctgtttcagatctgcagaac	10	6	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193039469	G	G	193039469	5	3	134	1	0	0	0	0	0	0	1	0	1131	521	18	4	1798	4	ATP13A5	3	193039469	Splice_Site	SNP	C	TCGA-49-4488-01A-01D-1753-08	913779	193039469	4982961	191	119999											
ZDHHC19	131540	broad.mit.edu	37	chr3	195937655	195937655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggggcagcccaaagcCcccggcccaaggcctgtggc	15	16	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195937655	A	A	195937655	1	1	134	0	1	0	0	0	0	0	0	0	17735	638	22	2		2	ZDHHC19	3	195937655	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2898186	195937655	2084775	192	120000											
ZNF595	152687	broad.mit.edu	37	chr4	53340	53340	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctgtgacctgagggtattgGacaatttgtagctaagactc	11	7	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53340	C	C	53340	1	2	134	0	1	0	0	0	0	0	0	0	18152	1189	41	4		4	ZNF595	4	53340	5'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08		53340	191100936	193	120001											
HTT	3064	broad.mit.edu	37	chr4	3211446	3211446	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggccggcagccctctcaGcctagtgcggtgttcccaag	13	16	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3211446	A	A	3211446	1	1	134	0	1	0	0	0	0	0	0	0	7527	986	34	4		4	HTT	4	3211446	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3158106	3211446	187942830	194	120002											
MAN2B2	23324	broad.mit.edu	37	chr4	6622834	6622834	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgggagccacagcagactGtagacaggtgcagggggtga	18	8	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6622834	A	A	6622834	1	1	134	0	1	0	0	0	0	0	0	0	9309	1392	48	4		4	MAN2B2	4	6622834	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3411388	6622834	184531442	195	120003											
TBC1D14	57533	broad.mit.edu	37	chr4	6998019	6998019	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagacttctatgcggtatttAtaatggtgaaaactcatttc	7	6	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6998019	G	G	6998019	1	3	134	0	1	0	0	0	0	0	0	0	15722	464	16	5		5	TBC1D14	4	6998019	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	375185	6998019	184156257	196	120004											
CPZ	8532	broad.mit.edu	37	chr4	8608933	8608933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggctgctgaagcccaggGcatggctgcgggccagtggg	20	10	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8608933	A	A	8608933	1	1	134	0	1	0	0	0	0	0	0	0	3871	1218	42	4		4	CPZ	4	8608933	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1610914	8608933	182545343	197	120005											
RAB28	9364	broad.mit.edu	37	chr4	13371599	13371599	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgacaatacgctgtcaattCcatacaacataaatgagaca	5	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13371599	T	T	13371599	1	4	134	0	1	0	0	0	0	0	0	0	13024	870	30	4		4	RAB28	4	13371599	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	4762666	13371599	177782677	198	120006											
CLRN2	645104	broad.mit.edu	37	chr4	17528371	17528371	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtttgtcacacgtggcAcagaaatgccacctcttaca	8	12	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17528371	T	T	17528371	1	4	134	0	1	0	0	0	0	0	0	0	3590	174	6	5		5	CLRN2	4	17528371	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	4156772	17528371	173625905	199	120007											
GBA3	57733	broad.mit.edu	37	chr4	22729490	22729490	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcggtacatattccgatggAaatttgtttgttgtgtagga	12	4	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22729490	T	T	22729490	1	4	134	0	1	0	0	0	0	0	0	0	6330	261	9	5		5	GBA3	4	22729490	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	5201119	22729490	168424786	200	120008											
TECRL	253017	broad.mit.edu	37	chr4	65170927	65170927	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgtagtaggcaatccaAgaagtaaatccccagtaaaa	7	7	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65170927	G	G	65170927	2	3	134	1	0	0	0	0	0	0	0	1	15868	59	3	5		5	TECRL	4	65170927	Silent	SNP	A	TCGA-49-4488-01A-01D-1753-08	42441437	65170927	125983349	201	120009											
UGT2B15	7366	broad.mit.edu	37	chr4	69513061	69513061	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggggcttcattggttggtCatgatgaattcttgataatt	11	5	3	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69513061	A	A	69513061	3	1	134	1	0	0	0	0	1	0	0	0	17084	826	29	3	1859	3	UGT2B15	4	69513061	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4342134	69513061	121641215	202	120010											
UGT2B4	7363	broad.mit.edu	37	chr4	70361499	70361499	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaattctgtgggccacacCagcacctttccacaactccc	6	17	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70361499	A	A	70361499	2	1	134	1	0	0	0	0	0	0	0	1	17087	581	21	2		2	UGT2B4	4	70361499	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	848438	70361499	120792777	203	120011											
G3BP2	9908	broad.mit.edu	37	chr4	76582913	76582913	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatactttgtggtgtataTcctttattagggagggaggg	13	3	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76582913	C	C	76582913	3	2	134	1	0	0	0	0	1	0	0	0	6202	1449	50	5	1305	5	G3BP2	4	76582913	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	6221414	76582913	114571363	204	120012											
USO1	8615	broad.mit.edu	37	chr4	76726398	76726398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatagaagaattaaaacGtaatcaggaacttttacaaa	7	4	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76726398	T	T	76726398	3	4	134	1	0	0	0	0	1	0	0	0	17165	1145	40	3	2146	3	USO1	4	76726398	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	143485	76726398	114427878	205	120013											
AFF1	4299	broad.mit.edu	37	chr4	88011124	88011124	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttttcttccctttccaaAtatctttccaggaaatgacc	3	12	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88011124	G	G	88011124	1	3	134	0	1	0	0	0	0	0	0	0	356	116	4	5		5	AFF1	4	88011124	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	11284726	88011124	103143152	206	120014											
UNC5C	8633	broad.mit.edu	37	chr4	96091427	96091427	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaaagcactgggccccgtGaccgtggtgatggtgttcgc	15	11	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96091427	T	T	96091427	2	4	134	1	0	0	0	0	0	0	0	1	17119	1277	45	3		3	UNC5C	4	96091427	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	8080303	96091427	95062849	207	120015											
C4orf37	285555	broad.mit.edu	37	chr4	98947359	98947359	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctcagaagaaagatcGggtagctcaaaagaaagcaa	10	8	2	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98947359	A	A	98947359	1	1	134	0	1	0	0	0	0	0	0	0	2290	1131	39	4		4	C4orf37	4	98947359	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2855932	98947359	92206917	208	120016											
C4orf17	84103	broad.mit.edu	37	chr4	100445758	100445758	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggtaaggaacagctatTtactgctatctatttagttt	7	5	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100445758	C	C	100445758	1	2	134	0	1	0	0	0	0	0	0	0	2275	1856	64	5		5	C4orf17	4	100445758	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1498399	100445758	90708518	209	120017											
ANK2	287	broad.mit.edu	37	chr4	114275528	114275528	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgtccacctgtatcgccCtccgggaggacagaaaaaca	9	13	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114275528	A	A	114275528	2	1	134	1	0	0	0	0	0	0	0	1	621	668	24	2		2	ANK2	4	114275528	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	13829770	114275528	76878748	210	120018											
FAT4	79633	broad.mit.edu	37	chr4	126372736	126372736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagtcatggaaaacaaacGgccaggcactttggtgatga	12	7	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126372736	T	T	126372736	3	4	134	1	0	0	0	0	1	0	0	0	5749	1116	39	1	10599	1	FAT4	4	126372736	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	12097208	126372736	64781540	211	120019											
INPP4B	8821	broad.mit.edu	37	chr4	143045795	143045795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatcagacactggggcaaGctgtacgcaagttcctgaag	12	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143045795	T	T	143045795	3	4	134	1	0	0	0	0	1	0	0	0	7823	962	34	3	967	3	INPP4B	4	143045795	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	16673059	143045795	48108481	212	120020											
MAB21L2	10586	broad.mit.edu	37	chr4	151504265	151504265	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgcaaggcggccatcgcCaaaaccatccgagaggtctg	13	14	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151504265	A	A	151504265	2	1	134	1	0	0	0	0	0	0	0	1	9230	581	21	2		2	MAB21L2	4	151504265	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	8458470	151504265	39650011	213	120021											
DDX60	55601	broad.mit.edu	37	chr4	169157543	169157543	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctatataaaacaaagtgtCttcttgtaaatatgaaaggg	8	5	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169157543	A	A	169157543	1	1	134	0	1	0	0	0	0	0	0	0	4411	928	32	3		3	DDX60	4	169157543	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	17653278	169157543	21996733	214	120022											
WDR17	116966	broad.mit.edu	37	chr4	177094609	177094609	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtattcagatcgggaaatAggattatcttggacaggtag	13	4	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177094609	T	T	177094609	1	4	134	0	1	0	0	0	0	0	0	0	17404	435	15	5		5	WDR17	4	177094609	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	7937066	177094609	14059667	215	120023											
VEGFC	7424	broad.mit.edu	37	chr4	177632762	177632762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggcaaaactgattgttaCtggtttggggccttgagaga	13	5	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177632762	A	A	177632762	3	1	134	1	0	0	0	0	1	0	0	0	17279	565	20	3	683	3	VEGFC	4	177632762	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	538153	177632762	13521514	216	120024											
F11	2160	broad.mit.edu	37	chr4	187197457	187197457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtcatggctcccgatgCttttgtctgtggccgaatct	11	11	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187197457	A	A	187197457	3	1	134	1	0	0	0	0	1	0	0	0	5380	797	28	3	690	3	F11	4	187197457	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	9564695	187197457	3956819	217	120025											
TRIML1	339976	broad.mit.edu	37	chr4	189068134	189068134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcagatcttcaccagtGggagacactactgggaggtg	13	9	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189068134	T	T	189068134	3	4	134	1	0	0	0	0	1	0	0	0	16675	1348	47	2	1037	2	TRIML1	4	189068134	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1870677	189068134	2086142	218	120026											
ADAMTS16	170690	broad.mit.edu	37	chr5	5262963	5262963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcagcgagtcttgcagCtcctgatttcgagagagaag	13	9	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5262963	A	A	5262963	1	1	134	0	1	0	0	0	0	0	0	0	261	812	28	3		3	ADAMTS16	5	5262963	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08		5262963	175652297	219	120027											
ADCY2	108	broad.mit.edu	37	chr5	7520843	7520843	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttattgttcttcttctctGcccgtaggtatcgttcttcc	6	12	5	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7520843	C	C	7520843	1	2	134	0	1	0	0	0	0	0	0	0	294	1334	46	4		4	ADCY2	5	7520843	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2257880	7520843	173394417	220	120028											
FASTKD3	79072	broad.mit.edu	37	chr5	7866830	7866830	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggatggcattcattaagtGaacatgaatgaagaagtttc	10	5	1	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7866830	A	A	7866830	3	1	134	1	0	0	0	0	1	0	0	0	5744	1294	45	4	645	4	FASTKD3	5	7866830	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	345987	7866830	173048430	221	120029											
CTNND2	1501	broad.mit.edu	37	chr5	11364842	11364842	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggtgccggtgtgtgctggCggcagagggtccccctggct	18	11	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11364842	T	T	11364842	2	4	134	1	0	0	0	0	0	0	0	1	4054	755	27	4		4	CTNND2	5	11364842	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	3498012	11364842	169550418	222	120030											
DNAH5	1767	broad.mit.edu	37	chr5	13758859	13758859	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgtgctatgtatgtattaTgtataaattcagtgaaaccc	7	5	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13758859	A	A	13758859	1	1	134	0	1	0	0	0	0	0	0	0	4644	1479	51	5		5	DNAH5	5	13758859	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	2394017	13758859	167156401	223	120031											
MYO10	4651	broad.mit.edu	37	chr5	16758368	16758368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcaggaggtcagtgaggCacacacacccattattaggt	12	9	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16758368	A	A	16758368	1	1	134	0	1	0	0	0	0	0	0	0	10156	725	25	3		3	MYO10	5	16758368	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2999509	16758368	164156892	224	120032											
IL7R	3575	broad.mit.edu	37	chr5	35876392	35876392	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactgcagggagagtggcaAgaatgggcctcatgtgtacc	15	8	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35876392	T	T	35876392	3	4	134	1	0	0	0	0	1	0	0	0	7775	72	3	5	1214	5	IL7R	5	35876392	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	19118024	35876392	145038868	225	120033											
C9	735	broad.mit.edu	37	chr5	39306769	39306769	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggaagaggcccagttgaCaaagtcagtcacatcaatca	9	9	4	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39306769	T	T	39306769	3	4	134	1	0	0	0	0	1	0	0	0	2469	478	17	4	325	4	C9	5	39306769	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	3430377	39306769	141608491	226	120034											
PTGER4	5734	broad.mit.edu	37	chr5	40681206	40681206	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggtgggcaacctggtGgccatcgtggtgctgtgcaa	19	8	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40681206	T	T	40681206	2	4	134	1	0	0	0	0	0	0	0	1	12851	1335	47	2		2	PTGER4	5	40681206	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	1374437	40681206	140234054	227	120035											
C6	729	broad.mit.edu	37	chr5	41199816	41199816	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtcaattggagtaactttGatttagtcaagctattttta	7	4	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41199816	T	T	41199816	1	4	134	0	1	0	0	0	0	0	0	0	2338	1305	45	3		3	C6	5	41199816	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	518610	41199816	139715444	228	120036											
C5orf34	375444	broad.mit.edu	37	chr5	43496520	43496520	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccgaatttacgtgtccaaTgacgacaatgttgatatgag	10	8	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43496520	C	C	43496520	1	2	134	0	1	0	0	0	0	0	0	0	2316	1479	51	5		5	C5orf34	5	43496520	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	2296704	43496520	137418740	229	120037											
HCN1	348980	broad.mit.edu	37	chr5	45261936	45261936	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttcatagtaggctagaggGatctatcaggagatagaata	11	5	4	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45261936	A	A	45261936	1	1	134	0	1	0	0	0	0	0	0	0	7062	1189	41	4		4	HCN1	5	45261936	3'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	1765416	45261936	135653324	230	120038											
ELOVL7	79993	broad.mit.edu	37	chr5	60067911	60067911	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatgaggagccaatcttcaActcttggatctaagagaaaa	8	8	4	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60067911	T	T	60067911	3	4	134	1	0	0	0	0	1	0	0	0	5121	43	2	5	795	5	ELOVL7	5	60067911	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	14805975	60067911	120847349	231	120039											
RGS7BP	401190	broad.mit.edu	37	chr5	63905141	63905141	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcacaaaacccgaggacctCcagacagctgaaccacacag	7	15	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63905141	A	A	63905141	1	1	134	0	1	0	0	0	0	0	0	0	13420	870	30	3		3	RGS7BP	5	63905141	3'UTR	SNP	C	TCGA-49-4488-01A-01D-1753-08	3837230	63905141	117010119	232	120040											
CD180	4064	broad.mit.edu	37	chr5	66492422	66492422	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgatgactttacagccGgcagaaaacagcaccaccca	10	12	0	3	rs146337741		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66492422	T	T	66492422	2	4	134	1	0	0	0	0	0	0	0	1	3002	1103	39	1		1	CD180	5	66492422	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	2587281	66492422	114422838	233	120041											
CENPH	64946	broad.mit.edu	37	chr5	68491566	68491566	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattgaagacctggaaaatGaaattgaagaggtaaaagtt	10	2	0	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68491566	C	C	68491566	3	2	134	1	0	0	0	0	1	0	0	0	3262	1291	45	4	276	4	CENPH	5	68491566	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1999144	68491566	112423694	234	120042											
IQGAP2	10788	broad.mit.edu	37	chr5	75950817	75950817	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacaaagctagagatgactAcaaaacattgggtaagtgag	11	5	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75950817	G	G	75950817	3	3	134	1	0	0	0	0	1	0	0	0	7885	391	14	5	2387	5	IQGAP2	5	75950817	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	7459251	75950817	104964443	235	120043											
AGGF1	55109	broad.mit.edu	37	chr5	76342119	76342119	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtaatgttataagatagtGatgtttaagagtattctccc	8	4	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76342119	T	T	76342119	1	4	134	0	1	0	0	0	0	0	0	0	382	1305	45	3		3	AGGF1	5	76342119	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	391302	76342119	104573141	236	120044											
GPR98	84059	broad.mit.edu	37	chr5	89930907	89930907	+	Intron	DEL	T	-	-													attctatcaattcttactacTttttgtgtatttgtttatta							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89930907	-	-	89930907	6	5	134	0	1	1	0	1	0	0	0	0	6787	1624	56	0		0	GPR98	5	89930907	Intron	DEL	T	TCGA-49-4488-01A-01D-1753-08	13588788	89930907	90984353	237	120045											
GPR98	84059	broad.mit.edu	37	chr5	90059092	90059092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctttttgtttttttttttGtttggccttactgaattttc	5	6	1	1	rs72084301		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90059092	T	T	90059092	1	4	134	0	1	0	0	0	0	0	0	0	6787	1392	48	3		3	GPR98	5	90059092	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	128185	90059092	90856168	238	120046											
TTC37	9652	broad.mit.edu	37	chr5	94876421	94876421	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagtttcattattctggtcCtctgtactttcagccaggaa	8	9	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94876421	G	G	94876421	3	3	134	1	0	0	0	0	1	0	0	0	16831	680	24	4	4322	4	TTC37	5	94876421	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4817329	94876421	86038839	239	120047											
GIN1	54826	broad.mit.edu	37	chr5	102423878	102423878	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagagataaagactttcTgaaaaaagaaaaatcataca	6	5	2	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102423878	C	C	102423878	1	2	134	0	1	0	0	0	0	0	0	0	6450	1594	55	5		5	GIN1	5	102423878	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	7547457	102423878	78491382	240	120048											
FBXL17	64839	broad.mit.edu	37	chr5	107216724	107216724	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagaaagcaaacaacttgaTagtcaactcttactttatca	5	8	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107216724	C	C	107216724	1	2	134	0	1	0	0	0	0	0	0	0	5770	1421	49	5		5	FBXL17	5	107216724	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	4792846	107216724	73698536	241	120049											
SRP19	6728	broad.mit.edu	37	chr5	112200078	112200078	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgtttgattatagtatttGaaattatttacccaacacta	4	6	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112200078	T	T	112200078	1	4	134	0	1	0	0	0	0	0	0	0	15272	1305	45	3		3	SRP19	5	112200078	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	4983354	112200078	68715182	242	120050											
MCC	4163	broad.mit.edu	37	chr5	112720711	112720711	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggaagcaattctatccctCagcttctttgtacaggagtt	8	10	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112720711	A	A	112720711	2	1	134	1	0	0	0	0	0	0	0	1	9466	813	29	3		3	MCC	5	112720711	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	520633	112720711	68194549	243	120051											
COMMD10	51397	broad.mit.edu	37	chr5	115469791	115469791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgttggatggcagcttaaCcttcagatggctcactctgc	10	12	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115469791	A	A	115469791	3	1	134	1	0	0	0	0	1	0	0	0	3747	506	18	3	444	3	COMMD10	5	115469791	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2749080	115469791	65445469	244	120052											
ADAMTS19	171019	broad.mit.edu	37	chr5	128994400	128994400	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatcatgcaagatcattAaaggggattttaatcacacc	7	7	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128994400	T	T	128994400	4	4	134	1	0	0	0	0	0	1	0	0	264	363	13	5	2435	5	ADAMTS19	5	128994400	Nonsense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	13524609	128994400	51920860	245	120053											
TGFBI	7045	broad.mit.edu	37	chr5	135388544	135388544	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaggctgcaagtggtccctGaggttatcgtggagtggacc	16	9	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135388544	A	A	135388544	1	1	134	0	1	0	0	0	0	0	0	0	15943	1305	45	4		4	TGFBI	5	135388544	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	6394144	135388544	45526716	246	120054											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711144	140711144	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttcgtttagattcttacaCaggagaaatatcaaataaag	6	5	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140711144	G	G	140711144	3	3	134	1	0	0	0	0	1	0	0	0	11644	478	17	4	895	4	PCDHGA1	5	140711144	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	5322600	140711144	40204116	247	120055											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720142	140720142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtgtgggtgatagcgcGggacagcgggaaccctccac	16	11	0	1	rs116787237	byFrequency;by1000genomes	TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140720142	T	T	140720142	3	4	134	1	0	0	0	0	1	0	0	0	11648	1116	39	1	1606	1	PCDHGA2	5	140720142	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	8998	140720142	40195118	248	120056											
PCDHGA3	56112	broad.mit.edu	37	chr5	140724495	140724495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatcttaactcagtgagtGgagaagtatcaatattaaaa	7	6	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140724495	A	A	140724495	3	1	134	1	0	0	0	0	1	0	0	0	11649	1349	47	4	897	4	PCDHGA3	5	140724495	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	4353	140724495	40190765	249	120057											
SLC36A2	153201	broad.mit.edu	37	chr5	150696494	150696494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcccaggatgctgatcaGggcgtccttgaagatggtga	15	8	1	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150696494	T	T	150696494	3	4	134	1	0	0	0	0	1	0	0	0	14708	991	35	2	119	2	SLC36A2	5	150696494	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	9971999	150696494	30218766	250	120058											
GRIA1	2890	broad.mit.edu	37	chr5	153026393	153026393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgggtggataattgatGggttggatggatgaactagt	16	2	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153026393	T	T	153026393	1	4	134	0	1	0	0	0	0	0	0	0	6833	1363	47	2		2	GRIA1	5	153026393	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2329899	153026393	27888867	251	120059											
ITK	3702	broad.mit.edu	37	chr5	156668716	156668716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaagccccagttacagCagggctgagatacggtgagc	14	10	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156668716	A	A	156668716	3	1	134	1	0	0	0	0	1	0	0	0	7979	710	25	3	1088	3	ITK	5	156668716	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	3642323	156668716	24246544	252	120060											
STK10	6793	broad.mit.edu	37	chr5	171533719	171533719	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtggcggctcgatctgGgccatctcaatcagcgtgat	14	10	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171533719	C	C	171533719	2	2	134	1	0	0	0	0	0	0	0	1	15404	1219	43	4		4	STK10	5	171533719	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	14865003	171533719	9381541	253	120061											
NSD1	64324	broad.mit.edu	37	chr5	176691851	176691851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagttgttcctttggccGcatatatgcgaatctataag	10	7	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176691851	T	T	176691851	1	4	134	0	1	0	0	0	0	0	0	0	10764	1102	38	3		3	NSD1	5	176691851	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	5158132	176691851	4223409	254	120062											
RGS14	10636	broad.mit.edu	37	chr5	176795123	176795123	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggatgggtgagggcggGgggctgttcgcgttcatcgc	20	8	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176795123	T	T	176795123	1	4	134	0	1	0	0	0	0	0	0	0	13406	1247	43	2		2	RGS14	5	176795123	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	103272	176795123	4120137	255	120063											
GRK6	2870	broad.mit.edu	37	chr5	176860075	176860075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcctgtacagaacgggagGcctggcccagcaagccaaga	13	12	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176860075	T	T	176860075	1	4	134	0	1	0	0	0	0	0	0	0	6859	1218	42	3		3	GRK6	5	176860075	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	64952	176860075	4055185	256	120064											
NEDD9	4739	broad.mit.edu	37	chr6	11185423	11185423	+	Frame_Shift_Del	DEL	C	-	-													ttgccatctccagcaaagagCgcttgaacagctgggcattt							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11185423	-	-	11185423	7	5	134	1	0	1	0	1	0	0	0	0	10408	768	27	0	31	0	NEDD9	6	11185423	Frame_Shift_Del	DEL	C	TCGA-49-4488-01A-01D-1753-08		11185423	159929644	257	120065											
C6orf114	85411	broad.mit.edu	37	chr6	13470384	13470384	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttggtgaatgtagccagtGatgtcccactggcttcccca	11	11	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13470384	C	C	13470384	3	2	134	1	0	0	0	0	1	0	0	0	2344	1280	45	4	285	4	C6orf114	6	13470384	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2284961	13470384	157644683	258	120066											
RANBP9	10048	broad.mit.edu	37	chr6	13697164	13697164	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggaaaaaagaagtcacatGagatattcactgaaagatga	9	4	2	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13697164	A	A	13697164	1	1	134	0	1	0	0	0	0	0	0	0	13140	1305	45	4		4	RANBP9	6	13697164	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	226780	13697164	157417903	259	120067											
GNL1	2794	broad.mit.edu	37	chr6	30520815	30520815	+	Intron	DEL	G	-	-													caaaatgattctgcatctttGgtctcccccatgtcctccta							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30520815	-	-	30520815	6	5	134	0	1	1	0	1	0	0	0	0	6599	1363	47	0		0	GNL1	6	30520815	Intron	DEL	G	TCGA-49-4488-01A-01D-1753-08	16823651	30520815	140594252	260	120068											
DHX16	8449	broad.mit.edu	37	chr6	30633333	30633333	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccccagctgcccggtactCccgggcgagatcccgcactc	10	20	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30633333	A	A	30633333	4	1	134	1	0	0	0	0	0	1	0	0	4542	864	30	3	2345	3	DHX16	6	30633333	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	112518	30633333	140481734	261	120069											
FLOT1	10211	broad.mit.edu	37	chr6	30709768	30709768	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggaggggaagcagtctGggccttggaatggtgggaat	19	5	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30709768	A	A	30709768	1	1	134	0	1	0	0	0	0	0	0	0	5994	1363	47	4		4	FLOT1	6	30709768	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	76435	30709768	140405299	262	120070											
VARS	7407	broad.mit.edu	37	chr6	31749539	31749539	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtatccaatacatcctcatCtgagagaggccaaaggtcag	10	10	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31749539	A	A	31749539	5	1	134	1	0	0	0	0	0	0	1	0	17250	927	32	3	1491	3	VARS	6	31749539	Splice_Site	SNP	C	TCGA-49-4488-01A-01D-1753-08	1039771	31749539	139365528	263	120071											
ANKS1A	23294	broad.mit.edu	37	chr6	35046481	35046481	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccgtgcggagccagggccAcctccctagcaccacctgca	11	19	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35046481	T	T	35046481	1	4	134	0	1	0	0	0	0	0	0	0	688	174	6	5		5	ANKS1A	6	35046481	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3296942	35046481	136068586	264	120072											
TEAD3	7005	broad.mit.edu	37	chr6	35443104	35443104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccccacgacccctgctgCccccatacctgcaggatggt	8	19	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35443104	A	A	35443104	1	1	134	0	1	0	0	0	0	0	0	0	15862	754	26	3		3	TEAD3	6	35443104	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	396623	35443104	135671963	265	120073											
DNAH8	1769	broad.mit.edu	37	chr6	38891908	38891908	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttcacagaaaacctgaaTcttatttcaatgttggtgga	7	8	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38891908	G	G	38891908	3	3	134	1	0	0	0	0	1	0	0	0	4647	1432	50	5	10555	5	DNAH8	6	38891908	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	3448804	38891908	132223159	266	120074											
DAAM2	23500	broad.mit.edu	37	chr6	39835296	39835296	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatttgtaggtttgtgaccCgcttcattgagctggagggc	14	7	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39835296	T	T	39835296	3	4	134	1	0	0	0	0	1	0	0	0	4249	652	23	4	457	4	DAAM2	6	39835296	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	943388	39835296	131279771	267	120075											
TRERF1	55809	broad.mit.edu	37	chr6	42236542	42236542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactggtgctgctgcatctGttgcatgtgctgtgacagca	12	9	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42236542	T	T	42236542	3	4	134	1	0	0	0	0	1	0	0	0	16599	1386	48	3	2871	3	TRERF1	6	42236542	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2401246	42236542	128878525	268	120076											
CRIP3	401262	broad.mit.edu	37	chr6	43276112	43276112	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcacatttcaggcagaagcGgtgccagttcttgcccaggg	12	12	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43276112	C	C	43276112	3	2	134	1	0	0	0	0	1	0	0	0	3908	1116	39	4	563	4	CRIP3	6	43276112	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1039570	43276112	127838955	269	120077											
MEP1A	4224	broad.mit.edu	37	chr6	46806780	46806780	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccgtgcaggtgcacggCagtgtcctgggcatggtgat	17	10	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46806780	A	A	46806780	2	1	134	1	0	0	0	0	0	0	0	1	9568	697	25	3		3	MEP1A	6	46806780	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	3530668	46806780	124308287	270	120078											
PGK2	5232	broad.mit.edu	37	chr6	49754615	49754615	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcctacacagtccttcaGgaacagaacatccttgccca	7	15	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49754615	A	A	49754615	2	1	134	1	0	0	0	0	0	0	0	1	11886	991	35	4		4	PGK2	6	49754615	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	2947835	49754615	121360452	271	120079											
PKHD1	5314	broad.mit.edu	37	chr6	51924904	51924904	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatcactgaaccaacaaatGactgcccttgtactttgtct	6	11	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51924904	C	C	51924904	1	2	134	0	1	0	0	0	0	0	0	0	12066	1305	45	4		4	PKHD1	6	51924904	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2170289	51924904	119190163	272	120080											
EYS	346007	broad.mit.edu	37	chr6	66205157	66205157	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctgtagaagtccaagcaGatgttttctgttagtgtcca	9	8	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66205157	T	T	66205157	2	4	134	1	0	0	0	0	0	0	0	1	5375	932	33	3		3	EYS	6	66205157	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	14280253	66205157	104909910	273	120081											
GJA10	84694	broad.mit.edu	37	chr6	90605636	90605636	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacatcaatggtaagacaGgcagccctaccgatcatgga	10	10	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90605636	A	A	90605636	2	1	134	1	0	0	0	0	0	0	0	1	6465	991	35	4		4	GJA10	6	90605636	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	24400479	90605636	80509431	274	120082											
FBXL4	26235	broad.mit.edu	37	chr6	99374630	99374630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatacatttggtacaccagCcaaattccacatagtatagg	7	9	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99374630	A	A	99374630	3	1	134	1	0	0	0	0	1	0	0	0	5778	739	26	3	1658	3	FBXL4	6	99374630	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	8768994	99374630	71740437	275	120083											
SLC22A16	85413	broad.mit.edu	37	chr6	110763799	110763799	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaggataaaggggacagtCactgtggagaggatcatctg	14	7	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110763799	A	A	110763799	2	1	134	1	0	0	0	0	0	0	0	1	14560	813	29	3		3	SLC22A16	6	110763799	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	11389169	110763799	60351268	276	120084											
HS3ST5	222537	broad.mit.edu	37	chr6	114384041	114384041	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccttcaggactgctgcagCctgcgatagaaggactcatc	10	12	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114384041	T	T	114384041	1	4	134	0	1	0	0	0	0	0	0	0	7435	753	26	4		4	HS3ST5	6	114384041	5'UTR	SNP	C	TCGA-49-4488-01A-01D-1753-08	3620242	114384041	56731026	277	120085											
ROS1	6098	broad.mit.edu	37	chr6	117662289	117662289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaataaagacttgcattaAaagtctaccttctgtagctc	5	8	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117662289	G	G	117662289	1	3	134	0	1	0	0	0	0	0	0	0	13642	29	1	5		5	ROS1	6	117662289	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3278248	117662289	53452778	278	120086											
LAMA2	3908	broad.mit.edu	37	chr6	129608943	129608943	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaatatgtaaacattgcCccaactgaggtccccccaaa	6	12	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129608943	G	G	129608943	1	3	134	0	1	0	0	0	0	0	0	0	8678	638	22	4		4	LAMA2	6	129608943	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	11946654	129608943	41506124	279	120087											
LAMA2	3908	broad.mit.edu	37	chr6	129670340	129670340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaagatggcatttattaCtacctaaaagtatgtcccaa	5	7	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129670340	A	A	129670340	1	1	134	0	1	0	0	0	0	0	0	0	8678	580	20	3		3	LAMA2	6	129670340	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	61397	129670340	41444727	280	120088											
ENPP3	5169	broad.mit.edu	37	chr6	132058512	132058512	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagccagcaatagaacatcaGatagccaatatgatgcttta	7	9	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132058512	T	T	132058512	3	4	134	1	0	0	0	0	1	0	0	0	5173	942	33	3	2193	3	ENPP3	6	132058512	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2388172	132058512	39056555	281	120089											
TAAR9	134860	broad.mit.edu	37	chr6	132859760	132859760	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaaattccatacatgttTtgacacatccttctgttttg	5	9	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132859760	G	G	132859760	3	3	134	1	0	0	0	0	1	0	0	0	15613	1841	64	5	334	5	TAAR9	6	132859760	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	801248	132859760	38255307	282	120090											
EYA4	2070	broad.mit.edu	37	chr6	133785997	133785997	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttcagtggttcacaacagGtatagtagctttttgtgttt	9	5	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133785997	A	A	133785997	5	1	134	1	0	0	0	0	0	0	1	0	5374	1275	44	4	839	4	EYA4	6	133785997	Splice_Site	SNP	G	TCGA-49-4488-01A-01D-1753-08	926237	133785997	37329070	283	120091											
TNFAIP3	7128	broad.mit.edu	37	chr6	138202505	138202505	+	3'UTR	SNP	C	T	T													gaagtggggcctcgagctgtCagtcatcatggtgctatcct							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138202505	T	T	138202505	1	4	134	0	1	0	0	0	0	0	0	0	16397	841	29	4		4	TNFAIP3	6	138202505	3'UTR	SNP	C	TCGA-49-4488-01A-01D-1753-08	4416508	138202505	32912562	284	120092	522	2									
TNFAIP3	7128	broad.mit.edu	37	chr6	138202512	138202512	+	3'UTR	SNP	C	T	T													ggcctcgagctgtcagtcatCatggtgctatcctctgaacc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138202512	T	T	138202512	1	4	134	0	1	0	0	0	0	0	0	0	16397	841	29	4		4	TNFAIP3	6	138202512	3'UTR	SNP	C	TCGA-49-4488-01A-01D-1753-08	7	138202512	32912555	285	120093	522	2									
GRM1	2911	broad.mit.edu	37	chr6	146480429	146480429	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagttgttattccattgtgTaagtagtgttattgccacag	9	6	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146480429	A	A	146480429	1	1	134	0	1	0	0	0	0	0	0	0	6862	1653	57	5		5	GRM1	6	146480429	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	8277917	146480429	24634638	286	120094											
GRM1	2911	broad.mit.edu	37	chr6	146492698	146492698	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attggaagcttcactagatgAtgcatggagttcatattcca	9	7	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146492698	C	C	146492698	1	2	134	0	1	0	0	0	0	0	0	0	6862	348	12	5		5	GRM1	6	146492698	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	12269	146492698	24622369	287	120095											
TFB1M	51106	broad.mit.edu	37	chr6	155579289	155579289	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcatgacactttttaaccCtcatttgaaaacaacacaac	2	11	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155579289	T	T	155579289	1	4	134	0	1	0	0	0	0	0	0	0	15916	696	24	4		4	TFB1M	6	155579289	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	9086591	155579289	15535778	288	120096											
CYTH3	9265	broad.mit.edu	37	chr7	6227205	6227205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacatcccaaccactctcaCcccactttctgcaagtttga	3	18	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6227205	A	A	6227205	1	1	134	0	1	0	0	0	0	0	0	0	4238	522	18	3		3	CYTH3	7	6227205	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08		6227205	152911458	289	120097											
TMEM195	392636	broad.mit.edu	37	chr7	15405878	15405878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacggagatcaatggagcCgttagaagaattgttaaaag	11	5	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15405878	A	A	15405878	1	1	134	0	1	0	0	0	0	0	0	0	16240	667	23	1		1	TMEM195	7	15405878	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	9178673	15405878	143732785	290	120098											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31103011	31103011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactcatgttttttctgtaCcctcagctcagctcttcatc	5	13	6	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31103011	A	A	31103011	1	1	134	0	1	0	0	0	0	0	0	0	303	522	18	3		3	ADCYAP1R1	7	31103011	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	15697133	31103011	128035652	291	120099											
PDE1C	5137	broad.mit.edu	37	chr7	31876719	31876719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatctcaatagtccttatcCtagcattgctgagatataaa	5	8	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31876719	A	A	31876719	1	1	134	0	1	0	0	0	0	0	0	0	11729	696	24	2		2	PDE1C	7	31876719	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	773708	31876719	127261944	292	120100											
PDE1C	5137	broad.mit.edu	37	chr7	32209623	32209623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccaccagttgactccatGtcctgccttccccaactcag	5	18	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32209623	T	T	32209623	1	4	134	0	1	0	0	0	0	0	0	0	11729	1392	48	3		3	PDE1C	7	32209623	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	332904	32209623	126929040	293	120101											
ELMO1	9844	broad.mit.edu	37	chr7	36927225	36927225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacaaggcggttcaggcGttgctgtttgatcagctcta	11	10	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36927225	T	T	36927225	3	4	134	1	0	0	0	0	1	0	0	0	5107	1145	40	3	549	3	ELMO1	7	36927225	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	4717602	36927225	122211438	294	120102											
ELMO1	9844	broad.mit.edu	37	chr7	37252959	37252959	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggtcctgggggtccattTtggtcatcatcctgtcttcc	10	13	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37252959	G	G	37252959	3	3	134	1	0	0	0	0	1	0	0	0	5107	1841	64	5	1292	5	ELMO1	7	37252959	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	325734	37252959	121885704	295	120103											
C7orf10	79783	broad.mit.edu	37	chr7	40228055	40228055	+	Intron	DEL	C	-	-													aaaaaaaaaaaaaaaaaaaaCaaaccccaaagattaatagc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40228055	-	-	40228055	6	5	134	0	1	1	0	1	0	0	0	0	2401	493	17	0		0	C7orf10	7	40228055	Intron	DEL	C	TCGA-49-4488-01A-01D-1753-08	2975096	40228055	118910608	296	120104											
ABCA13	154664	broad.mit.edu	37	chr7	48320968	48320968	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatttgtgaagttttccagCagactgtgaagccctcagaa	10	8	1	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48320968	T	T	48320968	4	4	134	1	0	0	0	0	0	1	0	0	31	711	25	4	8658	4	ABCA13	7	48320968	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	8092913	48320968	110817695	297	120105											
ABCA13	154664	broad.mit.edu	37	chr7	48520676	48520676	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctccctacctgaccaaccAcctgggccacacactgttga	7	17	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48520676	G	G	48520676	3	3	134	1	0	0	0	0	1	0	0	0	31	159	6	5	13030	5	ABCA13	7	48520676	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	199708	48520676	110617987	298	120106											
ZPBP	11055	broad.mit.edu	37	chr7	50129290	50129290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcgaaaagctcttggtaatCgaaccaagtgtccaactatc	8	10	1	0	rs148222395		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50129290	A	A	50129290	3	1	134	1	0	0	0	0	1	0	0	0	18348	884	31	3	940	3	ZPBP	7	50129290	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1608614	50129290	109009373	299	120107											
SEC61G	23480	broad.mit.edu	37	chr7	54825215	54825215	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaggtttagtgcatctttTaaccagccgaatggagtcct	9	9	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54825215	C	C	54825215	3	2	134	1	0	0	0	0	1	0	0	0	14116	1763	61	5	151	5	SEC61G	7	54825215	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	4695925	54825215	104313448	300	120108											
ZNF117	51351	broad.mit.edu	37	chr7	64438693	64438693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttgccacattcttcaCatttgtagagtttctctcca	6	11	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64438693	A	A	64438693	3	1	134	1	0	0	0	0	1	0	0	0	17843	478	17	3	199	3	ZNF117	7	64438693	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	9613478	64438693	94699970	301	120109											
BAZ1B	9031	broad.mit.edu	37	chr7	72861464	72861464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatggcagctaagttacgCcacagtcacaacacaagaga	8	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72861464	A	A	72861464	1	1	134	0	1	0	0	0	0	0	0	0	1335	754	26	3		3	BAZ1B	7	72861464	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	8422771	72861464	86277199	302	120110											
PCLO	27445	broad.mit.edu	37	chr7	82546048	82546048	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccattgtgttggttctgcAgatccttctcctggaaactg	10	10	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82546048	T	T	82546048	3	4	134	1	0	0	0	0	1	0	0	0	11677	188	7	5	4267	5	PCLO	7	82546048	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	9684584	82546048	76592615	303	120111											
ABCB4	5244	broad.mit.edu	37	chr7	87037453	87037453	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctagtgtctggcctttcTtcacctccaggctcagcccc	10	16	4	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87037453	G	G	87037453	3	3	134	1	0	0	0	0	1	0	0	0	43	1609	56	5	697	5	ABCB4	7	87037453	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	4491405	87037453	72101210	304	120112											
RUNDC3B	154661	broad.mit.edu	37	chr7	87436668	87436668	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagtgaagacaaaagcactCaccatcttaatattcacagg	6	10	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87436668	G	G	87436668	1	3	134	0	1	0	0	0	0	0	0	0	13856	841	29	4		4	RUNDC3B	7	87436668	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	399215	87436668	71701995	305	120113											
ADAM22	53616	broad.mit.edu	37	chr7	87765391	87765391	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actcagtcttacattccctgCtgtgctgttgtcttcttagg	8	11	4	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87765391	G	G	87765391	1	3	134	0	1	0	0	0	0	0	0	0	244	812	28	4		4	ADAM22	7	87765391	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	328723	87765391	71373272	306	120114											
CCDC132	55610	broad.mit.edu	37	chr7	92923775	92923775	+	Intron	SNP	G	T	T													cttacatagacttacaatgtGtgagaggccaaatagaaatt							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92923775	T	T	92923775	1	4	134	0	1	0	0	0	0	0	0	0	2793	1392	48	3		3	CCDC132	7	92923775	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	5158384	92923775	66214888	307	120115	523	2									
CCDC132	55610	broad.mit.edu	37	chr7	92923777	92923777	+	Intron	SNP	G	T	T													tacatagacttacaatgtgtGagaggccaaatagaaattat							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92923777	T	T	92923777	1	4	134	0	1	0	0	0	0	0	0	0	2793	1305	45	3		3	CCDC132	7	92923777	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2	92923777	66214886	308	120116	523	2									
TECPR1	25851	broad.mit.edu	37	chr7	97852397	97852397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccactcccctcggcacCcgggctctccgggatgatgg	13	17	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852397	A	A	97852397	3	1	134	1	0	0	0	0	1	0	0	0	15865	623	22	2	688	2	TECPR1	7	97852397	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4928620	97852397	61286266	309	120117											
STAG3	10734	broad.mit.edu	37	chr7	99779703	99779703	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatttaaagagaaccatacTttctcacaggaatggcgact	7	8	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99779703	A	A	99779703	1	1	134	0	1	0	0	0	0	0	0	0	15362	1624	56	5		5	STAG3	7	99779703	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1927306	99779703	59358960	310	120118											
SERPINE1	5054	broad.mit.edu	37	chr7	100775014	100775014	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggagaattgcttgaaccccgGagacagaggttgcagcgagc	15	9	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100775014	C	C	100775014	1	2	134	0	1	0	0	0	0	0	0	0	14224	1189	41	4		4	SERPINE1	7	100775014	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	995311	100775014	58363649	311	120119											
RELN	5649	broad.mit.edu	37	chr7	103183337	103183337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagctgacctgaaaaaattGgaaaatatggtttacctatg	8	6	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103183337	T	T	103183337	1	4	134	0	1	0	0	0	0	0	0	0	13328	1363	47	2		2	RELN	7	103183337	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2408323	103183337	55955326	312	120120											
LAMB1	3912	broad.mit.edu	37	chr7	107569639	107569640	+	Frame_Shift_Ins	INS	-	T	T													tgcagtgactttaacatctgINSttgcacttttgctgagtaaa							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107569640	T	T	107569639	7	5	134	1	0	1	1	0	0	0	0	0	8682	1377	48	0	619	0	LAMB1	7	107569639	Frame_Shift_Ins	INS	-	TCGA-49-4488-01A-01D-1753-08	4386302	107569639	51569024	313	120121											
FOXP2	93986	broad.mit.edu	37	chr7	114269998	114269998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaacaacagcagcaacaaCagcagcagcagcagcaacag	8	13	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114269998	A	A	114269998	3	1	134	1	0	0	0	0	1	0	0	0	6087	479	17	3	683	3	FOXP2	7	114269998	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	6700359	114269998	44868665	314	120122											
ASZ1	136991	broad.mit.edu	37	chr7	117025861	117025861	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatgattggggtcataagtCtcctaaggaggaggaagaaa	13	5	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117025861	T	T	117025861	3	4	134	1	0	0	0	0	1	0	0	0	1073	913	32	4	1020	4	ASZ1	7	117025861	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2755863	117025861	42112802	315	120123											
FAM40B	57464	broad.mit.edu	37	chr7	129098499	129098499	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccggaaagtttttctctctCaaagtttgcttttcttccct	5	12	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129098499	T	T	129098499	1	4	134	0	1	0	0	0	0	0	0	0	5612	841	29	4		4	FAM40B	7	129098499	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	12072638	129098499	30040164	316	120124											
WDR91	29062	broad.mit.edu	37	chr7	134873253	134873253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacagagtagacctcccCgtagtgggccctccagctca	9	17	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134873253	A	A	134873253	3	1	134	1	0	0	0	0	1	0	0	0	17465	652	23	1	442	1	WDR91	7	134873253	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	5774754	134873253	24265410	317	120125											
DGKI	9162	broad.mit.edu	37	chr7	137170135	137170135	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttacctggtaatgaactctCtgggagccagaagaaactga	11	8	1	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137170135	A	A	137170135	3	1	134	1	0	0	0	0	1	0	0	0	4511	912	32	3	829	3	DGKI	7	137170135	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2296882	137170135	21968528	318	120126											
SLC37A3	84255	broad.mit.edu	37	chr7	140035151	140035151	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaacccaaattagggcagActcgaagccccagcggtcct	9	14	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140035151	T	T	140035151	1	4	134	0	1	0	0	0	0	0	0	0	14713	275	10	5		5	SLC37A3	7	140035151	3'UTR	SNP	A	TCGA-49-4488-01A-01D-1753-08	2865016	140035151	19103512	319	120127											
PIP	5304	broad.mit.edu	37	chr7	142836473	142836473	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagacagaggcattgagtgCaaaaagttgatacaggagac	12	5	0	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142836473	G	G	142836473	1	3	134	0	1	0	0	0	0	0	0	0	12030	725	25	4		4	PIP	7	142836473	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2801322	142836473	16302190	320	120128											
FAM115A	9747	broad.mit.edu	37	chr7	143573464	143573464	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcaaagccaccccactgCgttcaggagaaagggcgtga	13	11	1	3	rs150435300	byFrequency	TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143573464	T	T	143573464	3	4	134	1	0	0	0	0	1	0	0	0	5451	768	27	4	2559	4	FAM115A	7	143573464	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	736991	143573464	15565199	321	120129											
OR2A2	442361	broad.mit.edu	37	chr7	143806748	143806748	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggtccagcactggcgattCtcctctgtggactcttctct	9	13	4	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143806748	A	A	143806748	3	1	134	1	0	0	0	0	1	0	0	0	11071	913	32	3	75	3	OR2A2	7	143806748	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	233284	143806748	15331915	322	120130											
NOBOX	135935	broad.mit.edu	37	chr7	144101904	144101904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattcctggttcacggaatGtttcttactatctttataca	6	8	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144101904	T	T	144101904	1	4	134	0	1	0	0	0	0	0	0	0	10607	1392	48	3		3	NOBOX	7	144101904	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	295156	144101904	15036759	323	120131											
PTPRN2	5799	broad.mit.edu	37	chr7	157691298	157691298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccagcctctgttctcaCggtgttcgccagcacccaga	10	15	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157691298	A	A	157691298	1	1	134	0	1	0	0	0	0	0	0	0	12916	551	19	3		3	PTPRN2	7	157691298	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	13589394	157691298	1447365	324	120132											
MYOM2	9172	broad.mit.edu	37	chr8	2090369	2090370	+	Intron	DNP	GG	TT	TT													gatggtgaattatttggggtGgggcaaaagtgtccatattt							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2090370	TT	TT	2090369	1	4	134	0	1	0	0	0	0	0	0	0	10186	1363	47	2		2	MYOM2	8	2090369	Intron	DNP	GG	TCGA-49-4488-01A-01D-1753-08		2090369	144273653	325	120133											
EBF2	64641	broad.mit.edu	37	chr8	25708066	25708066	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgctcttactttgccaaCcctatggtacattgtgtatc	7	10	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25708066	A	A	25708066	1	1	134	0	1	0	0	0	0	0	0	0	4921	522	18	3		3	EBF2	8	25708066	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	23617697	25708066	120655956	326	120134											
ADRA1A	148	broad.mit.edu	37	chr8	26614361	26614361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatatcctaggcatcatgCatcaatgtgatcacaatttt	5	8	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26614361	A	A	26614361	1	1	134	0	1	0	0	0	0	0	0	0	334	725	25	3		3	ADRA1A	8	26614361	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	906295	26614361	119749661	327	120135											
TEX15	56154	broad.mit.edu	37	chr8	30701125	30701125	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaagagaaaaatcaaaGcaatcggaacaatgctccat	7	8	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30701125	T	T	30701125	4	4	134	1	0	0	0	0	0	1	0	0	15901	963	34	3	2976	3	TEX15	8	30701125	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	4086764	30701125	115662897	328	120136											
ANK1	286	broad.mit.edu	37	chr8	41519408	41519408	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcacctcctcgtgctcctGggcggcatcggcgctggaca	13	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41519408	A	A	41519408	4	1	134	1	0	0	0	0	0	1	0	0	620	1357	47	4	226	4	ANK1	8	41519408	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	10818283	41519408	104844614	329	120137											
SNTG1	54212	broad.mit.edu	37	chr8	51571151	51571151	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttcttatcttttaaaGgtgaccacctgggactggac	8	8	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51571151	T	T	51571151	5	4	134	1	0	0	0	0	0	0	1	0	14988	1014	35	2	1016	2	SNTG1	8	51571151	Splice_Site	SNP	G	TCGA-49-4488-01A-01D-1753-08	10051743	51571151	94792871	330	120138											
PCMTD1	115294	broad.mit.edu	37	chr8	52773652	52773652	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtacgaatatactgagcTtcttttaaattatcaattaa	4	6	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52773652	A	A	52773652	3	1	134	1	0	0	0	0	1	0	0	0	11680	1606	56	5	1033	5	PCMTD1	8	52773652	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	1202501	52773652	93590370	331	120139											
EYA1	2138	broad.mit.edu	37	chr8	72182087	72182087	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaaccaaatcaatgtgtCtttgccttggctgagaaagc	10	8	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72182087	G	G	72182087	1	3	134	0	1	0	0	0	0	0	0	0	5371	928	32	4		4	EYA1	8	72182087	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	19408435	72182087	74181935	332	120140											
TRPA1	8989	broad.mit.edu	37	chr8	72969995	72969995	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattccaagatgcagaagcAgttgctaatataagtggaga	10	5	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72969995	T	T	72969995	2	4	134	1	0	0	0	0	0	0	0	1	16702	175	7	5		5	TRPA1	8	72969995	Silent	SNP	A	TCGA-49-4488-01A-01D-1753-08	787908	72969995	73394027	333	120141											
KCNB2	9312	broad.mit.edu	37	chr8	73849599	73849599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatggcacgctggagtatgCcccagttgacataactgtga	13	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73849599	A	A	73849599	3	1	134	1	0	0	0	0	1	0	0	0	8083	739	26	3	2015	3	KCNB2	8	73849599	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	879604	73849599	72514423	334	120142											
CRISPLD1	83690	broad.mit.edu	37	chr8	75941787	75941787	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtatgtatacttttaaaTaccatctatcactgtattca	3	7	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75941787	C	C	75941787	1	2	134	0	1	0	0	0	0	0	0	0	3914	1421	49	5		5	CRISPLD1	8	75941787	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	2092188	75941787	70422235	335	120143											
ZFHX4	79776	broad.mit.edu	37	chr8	77776697	77776697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgacagtgagctgagcCagaagctagaagacttagat	12	7	1	7			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77776697	A	A	77776697	3	1	134	1	0	0	0	0	1	0	0	0	17761	595	21	2	10785	2	ZFHX4	8	77776697	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1834910	77776697	68587325	336	120144											
ATP6V0D2	245972	broad.mit.edu	37	chr8	87151878	87151878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattaggtaggaacacttaGgtaattttgtagctgcttgt	10	6	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87151878	T	T	87151878	1	4	134	0	1	0	0	0	0	0	0	0	1178	1015	35	2		2	ATP6V0D2	8	87151878	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	9375181	87151878	59212144	337	120145											
SLC7A13	157724	broad.mit.edu	37	chr8	87235360	87235360	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaagaggacacaaccatAattggtaaacattatttcta	5	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87235360	T	T	87235360	1	4	134	0	1	0	0	0	0	0	0	0	14809	377	13	5		5	SLC7A13	8	87235360	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	83482	87235360	59128662	338	120146											
CNGB3	54714	broad.mit.edu	37	chr8	87655889	87655889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattgaatgggttatgacaGcttcaaaaacactggctctc	8	10	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87655889	T	T	87655889	1	4	134	0	1	0	0	0	0	0	0	0	3633	986	34	3		3	CNGB3	8	87655889	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	420529	87655889	58708133	339	120147											
OSR2	116039	broad.mit.edu	37	chr8	99961384	99961384	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgagatcacccgctccacCatcacggagatggcggcggc	12	16	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99961384	A	A	99961384	2	1	134	1	0	0	0	0	0	0	0	1	11388	581	21	2		2	OSR2	8	99961384	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	12305495	99961384	46402638	340	120148											
VPS13B	157680	broad.mit.edu	37	chr8	100821844	100821844	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attaataatttttttaaaatCacagtggttatgcctagtta	5	4	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100821844	T	T	100821844	1	4	134	0	1	0	0	0	0	0	0	0	17317	841	29	4		4	VPS13B	8	100821844	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	860460	100821844	45542178	341	120149											
SNX31	169166	broad.mit.edu	37	chr8	101596494	101596494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcctcacaccacaaagCggattttgactctgccctcc	5	18	2	1	rs147673797	by1000genomes	TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101596494	A	A	101596494	1	1	134	0	1	0	0	0	0	0	0	0	15015	783	27	3		3	SNX31	8	101596494	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	774650	101596494	44767528	342	120150											
PKHD1L1	93035	broad.mit.edu	37	chr8	110482517	110482517	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctggagtgtagccatacttGtaactgcaaaacgaggtcat	10	8	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110482517	C	C	110482517	1	2	134	0	1	0	0	0	0	0	0	0	12067	1392	48	4		4	PKHD1L1	8	110482517	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	8886023	110482517	35881505	343	120151											
CSMD3	114788	broad.mit.edu	37	chr8	113318176	113318176	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattctaaaatacataaaaTttcaggtatataaaatacca	2	5	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113318176	G	G	113318176	1	3	134	0	1	0	0	0	0	0	0	0	3980	1508	52	5		5	CSMD3	8	113318176	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	2835659	113318176	33045846	344	120152											
CSMD3	114788	broad.mit.edu	37	chr8	113420594	113420594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttattggtccaactgaaGtaaatcgaattgtgatctga	9	6	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113420594	T	T	113420594	3	4	134	1	0	0	0	0	1	0	0	0	3980	1029	36	3	5717	3	CSMD3	8	113420594	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	102418	113420594	32943428	345	120153											
ZNF572	137209	broad.mit.edu	37	chr8	125989475	125989475	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataaaacatcagagaatacAtacaggagaaaagccttatc	6	7	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125989475	T	T	125989475	3	4	134	1	0	0	0	0	1	0	0	0	18131	217	8	5	971	5	ZNF572	8	125989475	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	12568881	125989475	20374547	346	120154											
FAM49B	51571	broad.mit.edu	37	chr8	130874425	130874425	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctaaacttctggaatgaaTaaacatctttttcactaggg	6	8	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130874425	A	A	130874425	1	1	134	0	1	0	0	0	0	0	0	0	5627	1421	49	5		5	FAM49B	8	130874425	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	4884950	130874425	15489597	347	120155											
ADCY8	114	broad.mit.edu	37	chr8	131792865	131792865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcaagatgaatgggttgGgttggactcttcccagaaga	16	6	1	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131792865	T	T	131792865	3	4	134	1	0	0	0	0	1	0	0	0	300	1232	43	2	232	2	ADCY8	8	131792865	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	918440	131792865	14571157	348	120156											
TMEM71	137835	broad.mit.edu	37	chr8	133763935	133763935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctggagcaataatgggCtccttataaaagatagttga	10	6	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133763935	A	A	133763935	1	1	134	0	1	0	0	0	0	0	0	0	16323	812	28	3		3	TMEM71	8	133763935	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1971070	133763935	12600087	349	120157											
CYP11B1	1584	broad.mit.edu	37	chr8	143960556	143960556	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgcagcttctccacgTcctccggcagcatcacacac	7	18	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143960556	G	G	143960556	3	3	134	1	0	0	0	0	1	0	0	0	4178	1667	58	5	1256	5	CYP11B1	8	143960556	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	10196621	143960556	2403466	350	120158											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18574147	18574147	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaccctgacaacccatgTtcactcaagtgccaagccaa	6	14	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18574147	C	C	18574147	2	2	134	1	0	0	0	0	0	0	0	1	274	1731	60	5		5	ADAMTSL1	9	18574147	Silent	SNP	T	TCGA-49-4488-01A-01D-1753-08		18574147	122639284	351	120159											
TRPM3	80036	broad.mit.edu	37	chr9	73458090	73458090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttttaaagcaaatacCttttcatcattctaaagaaa	2	7	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73458090	A	A	73458090	1	1	134	0	1	0	0	0	0	0	0	0	16712	696	24	2		2	TRPM3	9	73458090	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	54883943	73458090	67755341	352	120160											
TRPM6	140803	broad.mit.edu	37	chr9	77353536	77353536	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttccaggaacctgttagGgaaaaagaggccattgatcc	10	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77353536	A	A	77353536	1	1	134	0	1	0	0	0	0	0	0	0	16715	1247	43	4		4	TRPM6	9	77353536	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3895446	77353536	63859895	353	120161											
PRUNE2	158471	broad.mit.edu	37	chr9	79325691	79325691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactgcccagaagccatgGgtgctgggtcaaaattgaag	15	8	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79325691	T	T	79325691	3	4	134	1	0	0	0	0	1	0	0	0	12747	1232	43	2	7815	2	PRUNE2	9	79325691	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1972155	79325691	61887740	354	120162											
FAM120A	23196	broad.mit.edu	37	chr9	96305469	96305469	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagcaggtgaatgatgcAtgaatgtgtcttctctggct	12	6	2	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96305469	C	C	96305469	1	2	134	0	1	0	0	0	0	0	0	0	5461	232	8	5		5	FAM120A	9	96305469	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	16979778	96305469	44907962	355	120163											
C9orf21	195827	broad.mit.edu	37	chr9	99404268	99404268	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaacctttaattagtccaaAgggaaaaattaattacctgg	6	7	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99404268	C	C	99404268	1	2	134	0	1	0	0	0	0	0	0	0	2499	87	3	5		5	C9orf21	9	99404268	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3098799	99404268	41809163	356	120164											
XPA	7507	broad.mit.edu	37	chr9	100459595	100459595	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcccactccgaggacCtagctcccagctccacgcac	8	20	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100459595	A	A	100459595	1	1	134	1	0	0	0	0	0	0	0	0	17567	696	24	2		2	XPA	9	100459595	Translation_Start_Site	SNP	C	TCGA-49-4488-01A-01D-1753-08	1055327	100459595	40753836	357	120165											
GABBR2	9568	broad.mit.edu	37	chr9	101258833	101258833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagagggtgggtgtgctgGggaccacaggaagggccagt	20	7	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101258833	T	T	101258833	1	4	134	0	1	0	0	0	0	0	0	0	6216	1247	43	2		2	GABBR2	9	101258833	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	799238	101258833	39954598	358	120166											
RNF20	56254	broad.mit.edu	37	chr9	104303258	104303258	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggaagctaaacagtggagGtgaggcaagaccctggaggc	16	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104303258	C	C	104303258	5	2	134	1	0	0	0	0	0	0	1	0	13584	1275	44	4	643	4	RNF20	9	104303258	Splice_Site	SNP	G	TCGA-49-4488-01A-01D-1753-08	3044425	104303258	36910173	359	120167											
CYLC2	1539	broad.mit.edu	37	chr9	105763849	105763849	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taactaaaacctttctttttTgttttaatagccaaagagta	4	6	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105763849	G	G	105763849	1	3	134	0	1	0	0	0	0	0	0	0	4175	1827	63	5		5	CYLC2	9	105763849	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1460591	105763849	35449582	360	120168											
TMEM38B	55151	broad.mit.edu	37	chr9	108472449	108472449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtacagtattcatactGcagcaccttccacacacccc	4	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108472449	T	T	108472449	1	4	134	0	1	0	0	0	0	0	0	0	16283	1334	46	3		3	TMEM38B	9	108472449	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2708600	108472449	32740982	361	120169											
ASTN2	23245	broad.mit.edu	37	chr9	119625830	119625830	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggccttagcccctgggccActgccatgttcccgggccaa	12	16	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119625830	T	T	119625830	1	4	134	0	1	0	0	0	0	0	0	0	1069	174	6	5		5	ASTN2	9	119625830	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	11153381	119625830	21587601	362	120170											
CRB2	286204	broad.mit.edu	37	chr9	126133024	126133024	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggcaactccgctgcctgcCgggatctcctctgcccagct	10	18	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126133024	A	A	126133024	2	1	134	1	0	0	0	0	0	0	0	1	3881	639	23	1		1	CRB2	9	126133024	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	6507194	126133024	15080407	363	120171											
SPTAN1	6709	broad.mit.edu	37	chr9	131345394	131345394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagtacagaagcatcaGgcttttgaggctgagctctc	12	8	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131345394	T	T	131345394	3	4	134	1	0	0	0	0	1	0	0	0	15235	991	35	2	1899	2	SPTAN1	9	131345394	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	5212370	131345394	9868037	364	120172											
FUBP3	8939	broad.mit.edu	37	chr9	133512319	133512319	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctggcccagctcccgtgaCgcgagacctgggggaggtca	16	13	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133512319	T	T	133512319	1	4	134	0	1	0	0	0	0	0	0	0	6153	551	19	4		4	FUBP3	9	133512319	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2166925	133512319	7701112	365	120173											
C9orf98	158067	broad.mit.edu	37	chr9	135698510	135698510	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccccccaacaccacccccCataaaatgagagctggggag	8	17	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135698510	T	T	135698510	1	4	134	0	1	0	0	0	0	0	0	0	2535	609	21	4		4	C9orf98	9	135698510	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2186191	135698510	5514921	366	120174											
ABCA2	20	broad.mit.edu	37	chr9	139910907	139910907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgggtgggctcctcctcCatgccacgggtctcctctgc	13	15	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139910907	A	A	139910907	3	1	134	1	0	0	0	0	1	0	0	0	32	594	21	2	4486	2	ABCA2	9	139910907	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4212397	139910907	1302524	367	120175											
ABCA2	20	broad.mit.edu	37	chr9	139913625	139913625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccctcgcgggcacccttGgcacctgctgcagccagcgc	11	20	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139913625	T	T	139913625	1	4	134	0	1	0	0	0	0	0	0	0	32	1363	47	2		2	ABCA2	9	139913625	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2718	139913625	1299806	368	120176											
NELF	26012	broad.mit.edu	37	chr9	140349771	140349771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacaccctgggaaaccaCcgcgagtcagcactgccctt	9	16	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140349771	A	A	140349771	1	1	134	0	1	0	0	0	0	0	0	0	10427	522	18	3		3	NELF	9	140349771	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	436146	140349771	863660	369	120177											
TUBB8	347688	broad.mit.edu	37	chr10	93393	93393	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacccctgaaaatggcagcCgccgttaggtagcggccgtg	14	13	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93393	A	A	93393	2	1	134	1	0	0	0	0	0	0	0	1	16887	639	23	1		1	TUBB8	10	93393	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08		93393	135441354	370	120178											
AKR1C2	1646	broad.mit.edu	37	chr10	5040858	5040859	+	Frame_Shift_Del	DEL	GG	-	-													cttgagccctggcttgttgaGgatcatctccagcagcctgt							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5040859	-	-	5040858	7	5	134	1	0	1	0	1	0	0	0	0	470	1000	35	0	462	0	AKR1C2	10	5040858	Frame_Shift_Del	DEL	GG	TCGA-49-4488-01A-01D-1753-08	4947465	5040858	130493889	371	120179											
CUBN	8029	broad.mit.edu	37	chr10	17146427	17146427	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgactgtaccttgctgagGaacctgacagagagctccag	12	11	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17146427	A	A	17146427	3	1	134	1	0	0	0	0	1	0	0	0	4084	1174	41	4	9687	4	CUBN	10	17146427	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	12105569	17146427	118388320	372	120180											
NSUN6	221078	broad.mit.edu	37	chr10	18931430	18931430	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaataacaggaataagtaAcacatcttgaaggtctggat	8	7	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18931430	T	T	18931430	3	4	134	1	0	0	0	0	1	0	0	0	10777	40	2	5	1159	5	NSUN6	10	18931430	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	1785003	18931430	116603317	373	120181											
PARD3	56288	broad.mit.edu	37	chr10	34400396	34400396	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttggtagctggagtaccTggggttctctttggcactct	13	10	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34400396	A	A	34400396	3	1	134	1	0	0	0	0	1	0	0	0	11537	1579	55	5	302	5	PARD3	10	34400396	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	15468966	34400396	101134351	374	120182											
ANKRD30A	91074	broad.mit.edu	37	chr10	37433954	37433954	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcagaatccaaacaagaGgaagatgaagaatattcttg	8	7	2	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37433954	A	A	37433954	2	1	134	1	0	0	0	0	0	0	0	1	658	991	35	4		4	ANKRD30A	10	37433954	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	3033558	37433954	98100793	375	120183											
C10orf128	170371	broad.mit.edu	37	chr10	50363897	50363897	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccatgggctgttttccacGgggctagaacccctcttcac	9	14	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50363897	C	C	50363897	1	2	134	0	1	0	0	0	0	0	0	0	1603	1131	39	4		4	C10orf128	10	50363897	3'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	12929943	50363897	85170850	376	120184											
SGMS1	259230	broad.mit.edu	37	chr10	52066844	52066844	+	3'UTR	DEL	C	-	-													tgtttattttatggcatcttCtctcatggagttcttagcac							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52066844	-	-	52066844	6	5	134	0	1	1	0	1	0	0	0	0	14327	928	32	0		0	SGMS1	10	52066844	3'UTR	DEL	C	TCGA-49-4488-01A-01D-1753-08	1702947	52066844	83467903	377	120185											
MYPN	84665	broad.mit.edu	37	chr10	69925955	69925955	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaagcattttcccattcaTacattcctctggtgtgaaca	6	11	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69925955	A	A	69925955	1	1	134	0	1	0	0	0	0	0	0	0	10192	1421	49	5		5	MYPN	10	69925955	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	17859111	69925955	65608792	378	120186											
CC2D2B	387707	broad.mit.edu	37	chr10	97763952	97763952	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcaagcttatctaaaataAaagataacatatatatcaac	2	7	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97763952	T	T	97763952	1	4	134	0	1	0	0	0	0	0	0	0	2755	29	1	5		5	CC2D2B	10	97763952	5'UTR	SNP	A	TCGA-49-4488-01A-01D-1753-08	27837997	97763952	37770795	379	120187											
ACTR1A	10121	broad.mit.edu	37	chr10	104247996	104247996	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccttgacgatgccatgctCcatgggatagcggattgaaa	11	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104247996	A	A	104247996	4	1	134	1	0	0	0	0	0	1	0	0	209	864	30	3	936	3	ACTR1A	10	104247996	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	6484044	104247996	31286751	380	120188											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118202626	118202626	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattttggaacagacaagatCacccgtatcaacatagctgg	8	9	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118202626	A	A	118202626	2	1	134	1	0	0	0	0	0	0	0	1	12247	816	29	3		3	PNLIPRP3	10	118202626	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	13954630	118202626	17332121	381	120189											
MRGPRE	116534	broad.mit.edu	37	chr11	3249776	3249776	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtccagccggccttgcAgcaagtcggggacgatggcc	16	12	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3249776	C	C	3249776	3	2	134	1	0	0	0	0	1	0	0	0	9858	188	7	5	688	5	MRGPRE	11	3249776	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08		3249776	131756740	382	120190											
OR51D1	390038	broad.mit.edu	37	chr11	4661295	4661295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcctctatcaccatgcCcaagatggccagtcttttcc	5	17	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4661295	A	A	4661295	3	1	134	1	0	0	0	0	1	0	0	0	11187	623	22	2	277	2	OR51D1	11	4661295	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1411519	4661295	130345221	383	120191											
CCKBR	887	broad.mit.edu	37	chr11	6291448	6291448	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgcgtgattgtagccacGtggctgctgtccggactact	13	12	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6291448	T	T	6291448	2	4	134	1	0	0	0	0	0	0	0	1	2909	1132	40	3		3	CCKBR	11	6291448	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	1630153	6291448	128715068	384	120192											
ZNF215	7762	broad.mit.edu	37	chr11	6964544	6964544	+	Intron	SNP	C	G	G													ggctaagttcacttttgggtCtgggttgaggtttgctaata							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6964544	G	G	6964544	1	3	134	0	1	0	0	0	0	0	0	0	17897	928	32	4		4	ZNF215	11	6964544	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	673096	6964544	128041972	385	120193	524	2									
ZNF215	7762	broad.mit.edu	37	chr11	6964546	6964546	+	Intron	SNP	G	T	T													ctaagttcacttttgggtctGggttgaggtttgctaatatc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6964546	T	T	6964546	1	4	134	0	1	0	0	0	0	0	0	0	17897	1363	47	2		2	ZNF215	11	6964546	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2	6964546	128041970	386	120194	524	2									
SYT9	143425	broad.mit.edu	37	chr11	7441837	7441837	+	Frame_Shift_Del	DEL	C	-	-													tgttgtcatatcctcggaagCccattgcacactggcattcc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7441837	-	-	7441837	7	5	134	1	0	1	0	1	0	0	0	0	15600	739	26	0	1460	0	SYT9	11	7441837	Frame_Shift_Del	DEL	C	TCGA-49-4488-01A-01D-1753-08	477291	7441837	127564679	387	120195											
PPFIBP2	8495	broad.mit.edu	37	chr11	7670474	7670474	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacctaactgtggtgaggaCtttttctttaaatatttcag	7	6	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7670474	T	T	7670474	1	4	134	0	1	0	0	0	0	0	0	0	12410	580	20	4		4	PPFIBP2	11	7670474	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	228637	7670474	127336042	388	120196											
INSC	387755	broad.mit.edu	37	chr11	15243094	15243094	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggccacacgggctgaggcTgcggctgtggtggcccaggt	19	11	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15243094	A	A	15243094	2	1	134	1	0	0	0	0	0	0	0	1	7834	1567	55	5		5	INSC	11	15243094	Silent	SNP	T	TCGA-49-4488-01A-01D-1753-08	7572620	15243094	119763422	389	120197											
GTF2H1	2965	broad.mit.edu	37	chr11	18382106	18382107	+	Intron	INS	-	T	T													tgtagaagattgtttttctgINSttggtctctacagcttgaga							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18382107	T	T	18382106	6	5	134	0	1	1	1	0	0	0	0	0	6925	1392	48	0		0	GTF2H1	11	18382106	Intron	INS	-	TCGA-49-4488-01A-01D-1753-08	3139012	18382106	116624410	390	120198											
IGSF22	283284	broad.mit.edu	37	chr11	18731092	18731092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctttgtgcacttggacCactcctttgtgtcttcagcc	9	12	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18731092	A	A	18731092	3	1	134	1	0	0	0	0	1	0	0	0	7670	595	21	2	1164	2	IGSF22	11	18731092	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	348986	18731092	116275424	391	120199											
SLC17A6	57084	broad.mit.edu	37	chr11	22387098	22387098	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgttgcttgcaggaagcTttggaatggtctggtacatg	13	6	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22387098	C	C	22387098	3	2	134	1	0	0	0	0	1	0	0	0	14534	1609	56	5	780	5	SLC17A6	11	22387098	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	3656006	22387098	112619418	392	120200											
BBOX1	8424	broad.mit.edu	37	chr11	27078781	27078781	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcccgatgagcattacagtGaattccaggctgattggctg	13	9	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27078781	A	A	27078781	3	1	134	1	0	0	0	0	1	0	0	0	1339	1291	45	4	259	4	BBOX1	11	27078781	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	4691683	27078781	107927735	393	120201											
DCDC1	341019	broad.mit.edu	37	chr11	31287134	31287134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagattcattcttattgtaCaagtatctaaaacctgtgca	5	7	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31287134	A	A	31287134	3	1	134	1	0	0	0	0	1	0	0	0	4317	478	17	3	98	3	DCDC1	11	31287134	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4208353	31287134	103719382	394	120202											
WT1	7490	broad.mit.edu	37	chr11	32437898	32437898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaataagaagaggtggGggcgggggagagagattctt	19	2	1	6			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32437898	T	T	32437898	1	4	134	0	1	0	0	0	0	0	0	0	17535	1247	43	2		2	WT1	11	32437898	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1150764	32437898	102568618	395	120203											
WT1	7490	broad.mit.edu	37	chr11	32437934	32437934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcccatccaccaaatgCtaccctgattacccacgtca	3	17	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32437934	A	A	32437934	1	1	134	0	1	0	0	0	0	0	0	0	17535	812	28	3		3	WT1	11	32437934	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	36	32437934	102568582	396	120204											
CCDC73	493860	broad.mit.edu	37	chr11	32663549	32663549	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttcctagtgctttttcaTgctcattttgaagattaaga	7	6	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32663549	C	C	32663549	3	2	134	1	0	0	0	0	1	0	0	0	2874	1464	51	5	2244	5	CCDC73	11	32663549	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	225615	32663549	102342967	397	120205											
RAG1	5896	broad.mit.edu	37	chr11	36594888	36594888	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccacccaccttgggactcAgttctgccccagatgaaatt	7	15	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36594888	C	C	36594888	3	2	134	1	0	0	0	0	1	0	0	0	13111	188	7	5	36	5	RAG1	11	36594888	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	3931339	36594888	98411628	398	120206											
CD82	3732	broad.mit.edu	37	chr11	44621828	44621828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcccactgaagaggggaGggccagggcgcagatacagc	17	11	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44621828	T	T	44621828	1	4	134	0	1	0	0	0	0	0	0	0	3070	1015	35	2		2	CD82	11	44621828	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	8026940	44621828	90384688	399	120207											
CHST1	8534	broad.mit.edu	37	chr11	45671461	45671461	+	Frame_Shift_Del	DEL	C	-	-													gcttgcccagggtggggtcgCcccgcgtgttgttctggatc							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45671461	-	-	45671461	7	5	134	1	0	1	0	1	0	0	0	0	3428	739	26	0	226	0	CHST1	11	45671461	Frame_Shift_Del	DEL	C	TCGA-49-4488-01A-01D-1753-08	1049633	45671461	89335055	400	120208											
OR4C15	81309	broad.mit.edu	37	chr11	55322373	55322373	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaggctctgtggcattctGatgggggtagcctggacagg	18	7	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55322373	A	A	55322373	2	1	134	1	0	0	0	0	0	0	0	1	11142	1277	45	4		4	OR4C15	11	55322373	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	9650912	55322373	79684143	401	120209											
OR8I2	120586	broad.mit.edu	37	chr11	55861237	55861237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaatgccatatgtgataGgcttcacaagctcgctgata	10	8	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55861237	T	T	55861237	3	4	134	1	0	0	0	0	1	0	0	0	11334	1000	35	2	456	2	OR8I2	11	55861237	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	538864	55861237	79145279	402	120210											
OR5T1	390155	broad.mit.edu	37	chr11	56043390	56043390	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctacagttgtcactccaaaAatgttggtcaatttcctggc	7	10	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56043390	T	T	56043390	3	4	134	1	0	0	0	0	1	0	0	0	11275	11	1	5	278	5	OR5T1	11	56043390	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	182153	56043390	78963126	403	120211											
CTNND1	1500	broad.mit.edu	37	chr11	57575995	57575995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacctggctgtggatgctcGcaacaaagaattaattggtg	11	7	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57575995	T	T	57575995	3	4	134	1	0	0	0	0	1	0	0	0	4053	1087	38	3	2271	3	CTNND1	11	57575995	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1532605	57575995	77430521	404	120212											
ZFP91	80829	broad.mit.edu	37	chr11	58385171	58385171	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagattcagactctgccGgaccttagtggacaggaaga	12	8	2	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58385171	T	T	58385171	4	4	134	1	0	0	0	0	0	1	0	0	17781	1117	39	1	1747	1	ZFP91	11	58385171	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	809176	58385171	76621345	405	120213											
MS4A6A	64231	broad.mit.edu	37	chr11	59945598	59945598	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacagaggatccaggcccagCtcctaattctaacaacaacc	6	14	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59945598	G	G	59945598	1	3	134	0	1	0	0	0	0	0	0	0	9958	812	28	4		4	MS4A6A	11	59945598	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1560427	59945598	75060918	406	120214											
MS4A12	54860	broad.mit.edu	37	chr11	60264643	60264643	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggacttatgagaatcatGtttctatcagttgttatggc	11	5	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60264643	A	A	60264643	1	1	134	0	1	0	0	0	0	0	0	0	9950	1392	48	4		4	MS4A12	11	60264643	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	319045	60264643	74741873	407	120215											
C11orf66	220004	broad.mit.edu	37	chr11	61250008	61250008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctaggctgggggtcctgGgtgactcagggcacagcgga	18	11	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61250008	T	T	61250008	1	4	134	0	1	0	0	0	0	0	0	0	1668	1247	43	2		2	C11orf66	11	61250008	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	985365	61250008	73756508	408	120216											
RCE1	9986	broad.mit.edu	37	chr11	66613459	66613459	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgccctgggtgtgggactcTtcctgcttctgctccagccc	11	15	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66613459	C	C	66613459	3	2	134	1	0	0	0	0	1	0	0	0	13284	1609	56	5	913	5	RCE1	11	66613459	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	5363451	66613459	68393057	409	120217											
GAL	51083	broad.mit.edu	37	chr11	68453150	68453150	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcatggcctccccactcctGaccccacctgcccctcgctt	6	22	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68453150	T	T	68453150	1	4	134	0	1	0	0	0	0	0	0	0	6258	1305	45	3		3	GAL	11	68453150	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1839691	68453150	66553366	410	120218											
P2RY6	5031	broad.mit.edu	37	chr11	73008427	73008427	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctacaaaggcacgcggccGtttgccagtgccaacagcgt	12	14	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73008427	A	A	73008427	2	1	134	1	0	0	0	0	0	0	0	1	11448	1132	40	4		4	P2RY6	11	73008427	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	4555277	73008427	61998089	411	120219											
GDPD4	220032	broad.mit.edu	37	chr11	76944186	76944186	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctcattgacggtgtataCgttgatatggatgttagctg	13	5	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76944186	T	T	76944186	3	4	134	1	0	0	0	0	1	0	0	0	6390	536	19	4	305	4	GDPD4	11	76944186	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	3935759	76944186	58062330	412	120220											
DLG2	1740	broad.mit.edu	37	chr11	85164153	85164153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaaaacaattaacagaCaatttgtggataagtgcatt	6	5	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85164153	A	A	85164153	1	1	134	0	1	0	0	0	0	0	0	0	4595	493	17	3		3	DLG2	11	85164153	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	8219967	85164153	49842363	413	120221											
CASP5	838	broad.mit.edu	37	chr11	104871047	104871047	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttagactgaggcagttgCggttgttgaatatctggaag	13	6	1	3	rs45464699	byFrequency	TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104871047	T	T	104871047	3	4	134	1	0	0	0	0	1	0	0	0	2700	768	27	4	427	4	CASP5	11	104871047	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	19706894	104871047	30135469	414	120222											
FXYD2	486	broad.mit.edu	37	chr11	117693433	117693433	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccccttggggctgccgcCtaggagagagccagaggtgg	17	12	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117693433	T	T	117693433	5	4	134	1	0	0	0	0	0	0	1	0	6178	695	24	4	486	4	FXYD2	11	117693433	Splice_Site	SNP	C	TCGA-49-4488-01A-01D-1753-08	12822386	117693433	17313083	415	120223											
HEPACAM	220296	broad.mit.edu	37	chr11	124792373	124792373	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcacaggggagagaagCgggtggctggcccaggtaca	18	9	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792373	T	T	124792373	1	4	134	0	1	0	0	0	0	0	0	0	7119	783	27	4		4	HEPACAM	11	124792373	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	7098940	124792373	10214143	416	120224											
FEZ1	9638	broad.mit.edu	37	chr11	125324086	125324086	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccactctgcagaatgttggaGatgccttccatgctgaagcg	11	11	1	3	rs139178115		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125324086	T	T	125324086	2	4	134	1	0	0	0	0	0	0	0	1	5880	932	33	3		3	FEZ1	11	125324086	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	531713	125324086	9682430	417	120225											
PATE2	399967	broad.mit.edu	37	chr11	125647266	125647266	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagaacccaaaatccaggaGagacgtagaactaaactccc	7	11	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125647266	A	A	125647266	1	1	134	0	1	0	0	0	0	0	0	0	11568	957	33	4		4	PATE2	11	125647266	3'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	323180	125647266	9359250	418	120226											
OPCML	4978	broad.mit.edu	37	chr11	132306186	132306186	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaaagaggccctcctcctCaccaaactcttttctccaac	3	17	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132306186	T	T	132306186	1	4	134	0	1	0	0	0	0	0	0	0	10968	841	29	4		4	OPCML	11	132306186	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	6658920	132306186	2700330	419	120227											
GLB1L2	89944	broad.mit.edu	37	chr11	134243609	134243609	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtgtcctgcctccctcCcacaggcttaattggaaatc	7	16	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134243609	T	T	134243609	1	4	134	0	1	0	0	0	0	0	0	0	6493	638	22	4		4	GLB1L2	11	134243609	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1937423	134243609	762907	420	120228											
CLEC12A	160364	broad.mit.edu	37	chr12	10131477	10131477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcatattaggaaataaagGtaaaatgaatgaatgaatga	10	1	0	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10131477	T	T	10131477	1	4	134	0	1	0	0	0	0	0	0	0	3529	1276	44	3		3	CLEC12A	12	10131477	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08		10131477	123720418	421	120229											
CLEC12B	387837	broad.mit.edu	37	chr12	10168005	10168005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagacagtttggaagaaaaGgtaggattgagtctcattct	11	4	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10168005	T	T	10168005	3	4	134	1	0	0	0	0	1	0	0	0	3530	1014	35	2	578	2	CLEC12B	12	10168005	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	36528	10168005	123683890	422	120230											
LRP6	4040	broad.mit.edu	37	chr12	12340001	12340001	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtccagtacaatatgtcctCaaataacgtcaaggcaaaag	7	9	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12340001	T	T	12340001	3	4	134	1	0	0	0	0	1	0	0	0	9049	835	29	4	4221	4	LRP6	12	12340001	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2171996	12340001	121511894	423	120231											
CMAS	55907	broad.mit.edu	37	chr12	22214339	22214339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaataatatcttatgatGtaaaagatgctattgggata	8	2	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22214339	T	T	22214339	3	4	134	1	0	0	0	0	1	0	0	0	3607	1377	48	3	935	3	CMAS	12	22214339	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	9874338	22214339	111637556	424	120232											
LRMP	4033	broad.mit.edu	37	chr12	25232031	25232031	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtatatccatctgccctAtaccatcccattcccatatc	3	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25232031	T	T	25232031	1	4	134	0	1	0	0	0	0	0	0	0	9037	464	16	5		5	LRMP	12	25232031	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3017692	25232031	108619864	425	120233											
DENND5B	160518	broad.mit.edu	37	chr12	31577444	31577444	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggctcttaactggccatgtCaccaggacctcctaaaactg	9	13	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31577444	A	A	31577444	1	1	134	0	1	0	0	0	0	0	0	0	4477	841	29	3		3	DENND5B	12	31577444	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	6345413	31577444	102274451	426	120234											
FGD4	121512	broad.mit.edu	37	chr12	32735020	32735020	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctcccagcacttgccacaGaggcagggaaatgatacaga	10	12	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32735020	A	A	32735020	2	1	134	1	0	0	0	0	0	0	0	1	5892	933	33	4		4	FGD4	12	32735020	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	1157576	32735020	101116875	427	120235											
PRPF40B	25766	broad.mit.edu	37	chr12	50025528	50025528	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggattgcctgaggaagtGcccaagtgagggtcatggct	17	7	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50025528	A	A	50025528	1	1	134	0	1	0	0	0	0	0	0	0	12678	1334	46	4		4	PRPF40B	12	50025528	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	17290508	50025528	83826367	428	120236											
KRT6B	3854	broad.mit.edu	37	chr12	52843231	52843231	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacacaaggattcctcagCggctgtccactccgtgctca	10	14	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52843231	T	T	52843231	1	4	134	0	1	0	0	0	0	0	0	0	8552	783	27	4		4	KRT6B	12	52843231	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2817703	52843231	81008664	429	120237											
NFE2	4778	broad.mit.edu	37	chr12	54686696	54686696	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtctcagcagctggcaagGtatagttggagtgggccaag	17	7	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54686696	C	C	54686696	3	2	134	1	0	0	0	0	1	0	0	0	10461	1261	44	4	541	4	NFE2	12	54686696	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1843465	54686696	79165199	430	120238											
AGAP2	116986	broad.mit.edu	37	chr12	58127798	58127798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagcagtgctttcctaaCccctccttaccttgtgtccc	6	15	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58127798	T	T	58127798	1	4	134	0	1	0	0	0	0	0	0	0	368	522	18	4		4	AGAP2	12	58127798	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	3441102	58127798	75724097	431	120239											
MDM2	4193	broad.mit.edu	37	chr12	69229771	69229771	+	Intron	DEL	T	-	-													atgaagatgatgaggtagtaTtttttttcccctctaattat							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69229771	-	-	69229771	6	5	134	0	1	1	0	1	0	0	0	0	9506	1508	52	0		0	MDM2	12	69229771	Intron	DEL	T	TCGA-49-4488-01A-01D-1753-08	11101973	69229771	64622124	432	120240											
NAV3	89795	broad.mit.edu	37	chr12	78443851	78443851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatttagaagagactatgtCcagtcttcgtgggactcaga	11	7	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78443851	A	A	78443851	3	1	134	1	0	0	0	0	1	0	0	0	10279	855	30	3	2140	3	NAV3	12	78443851	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	9214080	78443851	55408044	433	120241											
NAV3	89795	broad.mit.edu	37	chr12	78515872	78515872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgggcagcatgggcagtgCtggtgggctaagcggcagca	18	9	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78515872	A	A	78515872	3	1	134	1	0	0	0	0	1	0	0	0	10279	797	28	3	3964	3	NAV3	12	78515872	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	72021	78515872	55336023	434	120242											
LIN7A	8825	broad.mit.edu	37	chr12	81282952	81282952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaatcttaacaatttcaaCtgtttgtgtagagaagacat	6	7	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81282952	A	A	81282952	1	1	134	0	1	0	0	0	0	0	0	0	8883	580	20	3		3	LIN7A	12	81282952	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2767080	81282952	52568943	435	120243											
SLC6A15	55117	broad.mit.edu	37	chr12	85266262	85266262	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataatgcccaggagcttctcCgggcattttaagagcttctt	9	10	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85266262	G	G	85266262	1	3	134	0	1	0	0	0	0	0	0	0	14792	667	23	4		4	SLC6A15	12	85266262	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	3983310	85266262	48585633	436	120244											
C12orf50	160419	broad.mit.edu	37	chr12	88381709	88381709	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtactagtcgggtagtTagggaatgctttggatgagg	17	3	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88381709	A	A	88381709	2	1	134	1	0	0	0	0	0	0	0	1	1708	1741	61	5		5	C12orf50	12	88381709	Silent	SNP	T	TCGA-49-4488-01A-01D-1753-08	3115447	88381709	45470186	437	120245											
GALNT4	8693	broad.mit.edu	37	chr12	89918307	89918307	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcagctcttgcctgccCaagtccacctcaccgccatc	8	19	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89918307	G	G	89918307	3	3	134	1	0	0	0	0	1	0	0	0	6277	595	21	4	1720	4	GALNT4	12	89918307	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1536598	89918307	43933588	438	120246											
AMDHD1	144193	broad.mit.edu	37	chr12	96361533	96361533	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttttttttttttttctaGatgggagcatttgatttacc	7	4	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96361533	C	C	96361533	5	2	134	1	0	0	0	0	0	0	1	0	567	956	33	4	1227	4	AMDHD1	12	96361533	Splice_Site	SNP	G	TCGA-49-4488-01A-01D-1753-08	6443226	96361533	37490362	439	120247											
STAB2	55576	broad.mit.edu	37	chr12	104063256	104063256	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taatggaaattaaaatgcatCccctttgaggaattggtgct	9	6	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104063256	A	A	104063256	1	1	134	0	1	0	0	0	0	0	0	0	15356	870	30	3		3	STAB2	12	104063256	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	7701723	104063256	29788639	440	120248											
WSCD2	9671	broad.mit.edu	37	chr12	108634006	108634006	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taggtgctcaataaatacgcGaatgactgagtgaacaaatg	10	6	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108634006	A	A	108634006	1	1	134	0	1	0	0	0	0	0	0	0	17534	1073	37	4		4	WSCD2	12	108634006	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	4570750	108634006	25217889	441	120249											
UBE3B	89910	broad.mit.edu	37	chr12	109921467	109921467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcagctgttgtgatccaGgcccatgtccggagttttct	13	11	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109921467	T	T	109921467	3	4	134	1	0	0	0	0	1	0	0	0	17006	991	35	2	113	2	UBE3B	12	109921467	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1287461	109921467	23930428	442	120250											
TRPV4	59341	broad.mit.edu	37	chr12	110236695	110236695	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggctggttggtgcaggcAgccagcgacaggggcagctc	19	10	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110236695	G	G	110236695	2	3	134	1	0	0	0	0	0	0	0	1	16723	175	7	5		5	TRPV4	12	110236695	Silent	SNP	A	TCGA-49-4488-01A-01D-1753-08	315228	110236695	23615200	443	120251											
RBM19	9904	broad.mit.edu	37	chr12	114374839	114374839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggctctgctgggtccttttCcatgggttctgaaggtgtgt	14	8	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114374839	T	T	114374839	3	4	134	1	0	0	0	0	1	0	0	0	13229	864	30	4	877	4	RBM19	12	114374839	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4138144	114374839	19477056	444	120252											
RBM19	9904	broad.mit.edu	37	chr12	114397650	114397650	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaccctctctcctccttGggcaacaggacagactcacc	7	19	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114397650	A	A	114397650	1	1	134	0	1	0	0	0	0	0	0	0	13229	1363	47	4		4	RBM19	12	114397650	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	22811	114397650	19454245	445	120253											
MAP1LC3B2	643246	broad.mit.edu	37	chr12	117013775	117013775	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggagaagaccttcaagcagCggcgcaccttcgaacaaaga	11	12	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117013775	G	G	117013775	3	3	134	1	0	0	0	0	1	0	0	0	9324	759	27	4	30	4	MAP1LC3B2	12	117013775	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2616125	117013775	16838120	446	120254											
KSR2	283455	broad.mit.edu	37	chr12	117907527	117907527	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtttcgctttggcagtttcTccagcatgtccatgagcttg	11	10	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117907527	A	A	117907527	3	1	134	1	0	0	0	0	1	0	0	0	8654	1551	54	5	74	5	KSR2	12	117907527	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	893752	117907527	15944368	447	120255											
VPS33A	65082	broad.mit.edu	37	chr12	122720130	122720130	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacatctttattaaactctCcagaaactccccagtttaag	3	13	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122720130	T	T	122720130	1	4	134	0	1	0	0	0	0	0	0	0	17328	870	30	4		4	VPS33A	12	122720130	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	4812603	122720130	11131765	448	120256											
RIMBP2	23504	broad.mit.edu	37	chr12	130926753	130926753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcactgcacggagatgcGgtaggtgcaggctgccatgt	16	10	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130926753	T	T	130926753	3	4	134	1	0	0	0	0	1	0	0	0	13472	1116	39	1	2113	1	RIMBP2	12	130926753	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	8206623	130926753	2925142	449	120257											
EP400	57634	broad.mit.edu	37	chr12	132529882	132529882	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgcaggcaggaagaagaAgcagcgtcacggggaggcgg	19	8	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132529882	G	G	132529882	3	3	134	1	0	0	0	0	1	0	0	0	5191	72	3	5	6946	5	EP400	12	132529882	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	1603129	132529882	1322013	450	120258											
IFT88	8100	broad.mit.edu	37	chr13	21166539	21166539	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttggaagccaagaaaaaaGataggtatgtaagtccttat	9	5	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21166539	C	C	21166539	3	2	134	1	0	0	0	0	1	0	0	0	7636	942	33	4	447	4	IFT88	13	21166539	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08		21166539	94003339	451	120259											
FLT3	2322	broad.mit.edu	37	chr13	28644583	28644583	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataacttacaaattacgttCtctagagaaaaacagctaaa	4	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28644583	T	T	28644583	1	4	134	0	1	0	0	0	0	0	0	0	6000	928	32	4		4	FLT3	13	28644583	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	7478044	28644583	86525295	452	120260											
RXFP2	122042	broad.mit.edu	37	chr13	32363408	32363408	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaactgtctaatgtatcActgcaatgtgtttctatgca	7	7	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32363408	T	T	32363408	1	4	134	0	1	0	0	0	0	0	0	0	13871	174	6	5		5	RXFP2	13	32363408	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3718825	32363408	82806470	453	120261											
C13orf23	80209	broad.mit.edu	37	chr13	39586310	39586310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaaacccagggataccCgggagggacaaaaggcctgg	16	9	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39586310	A	A	39586310	2	1	134	1	0	0	0	0	0	0	0	1	1734	639	23	1		1	C13orf23	13	39586310	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	7222902	39586310	75583568	454	120262											
DIAPH3	81624	broad.mit.edu	37	chr13	60485886	60485886	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccacaaccacaaactgctCaggttcacataagttgctat	5	12	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60485886	T	T	60485886	3	4	134	1	0	0	0	0	1	0	0	0	4560	835	29	4	1287	4	DIAPH3	13	60485886	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	20899576	60485886	54683992	455	120263											
GPC5	2262	broad.mit.edu	37	chr13	92797141	92797141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcttcagctgggcagtgGtggaggcatggttgaacaag	15	7	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92797141	T	T	92797141	3	4	134	1	0	0	0	0	1	0	0	0	6666	1261	44	3	1486	3	GPC5	13	92797141	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	32311255	92797141	22372737	456	120264											
NALCN	259232	broad.mit.edu	37	chr13	101748033	101748033	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgccattgcaatcttccTaaagtagaaaaacaagagga	7	7	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101748033	C	C	101748033	5	2	134	1	0	0	0	0	0	0	1	0	10242	1536	53	5	2123	5	NALCN	13	101748033	Splice_Site	SNP	T	TCGA-49-4488-01A-01D-1753-08	8950892	101748033	13421845	457	120265											
DAOA	267012	broad.mit.edu	37	chr13	106119472	106119472	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctgagcaaatctgaaAactctctaaactctattggt	5	9	5	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106119472	T	T	106119472	3	4	134	1	0	0	0	0	1	0	0	0	4265	14	1	5	121	5	DAOA	13	106119472	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	4371439	106119472	9050406	458	120266											
MYO16	23026	broad.mit.edu	37	chr13	109707460	109707460	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagatccagtcaccataGcatcacaactcagggttagt	10	10	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109707460	A	A	109707460	3	1	134	1	0	0	0	0	1	0	0	0	10158	971	34	4	3147	4	MYO16	13	109707460	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	3587988	109707460	5462418	459	120267											
ATP11A	23250	broad.mit.edu	37	chr13	113465094	113465094	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccagtaactgtttaaaaaAtaagttttacccaggtgcag	8	7	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113465094	T	T	113465094	1	4	134	0	1	0	0	0	0	0	0	0	1123	116	4	5		5	ATP11A	13	113465094	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3757634	113465094	1704784	460	120268											
MYH7	4625	broad.mit.edu	37	chr14	23888306	23888306	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtccacagccagccttattGctgggaagggaagtgatttg	14	8	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23888306	C	C	23888306	1	2	134	0	1	0	0	0	0	0	0	0	10133	1334	46	4		4	MYH7	14	23888306	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08		23888306	83461234	461	120269											
NGDN	25983	broad.mit.edu	37	chr14	23944436	23944436	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcatgtaccttatggatttGacccacctcattctggacaa	6	12	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23944436	A	A	23944436	2	1	134	1	0	0	0	0	0	0	0	1	10488	1281	45	4		4	NGDN	14	23944436	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	56130	23944436	83405104	462	120270											
PSME2	5721	broad.mit.edu	37	chr14	24615484	24615484	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacccggatgttggttaagGgtctgggttgtcaaaagctt	14	6	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24615484	A	A	24615484	1	1	134	0	1	0	0	0	0	0	0	0	12813	1247	43	4		4	PSME2	14	24615484	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	671048	24615484	82734056	463	120271											
SAMD4A	23034	broad.mit.edu	37	chr14	55251380	55251380	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccccatgtccctgttaccGtgtgcctgggagaactggcc	12	14	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55251380	C	C	55251380	1	2	134	0	1	0	0	0	0	0	0	0	13932	1160	40	4		4	SAMD4A	14	55251380	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	30635896	55251380	52098160	464	120272											
FBXO34	55030	broad.mit.edu	37	chr14	55817595	55817595	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttaaaaaagccaaggtaCaggtggaaaggatgagggag	14	4	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55817595	T	T	55817595	4	4	134	1	0	0	0	0	0	1	0	0	5801	479	17	4	489	4	FBXO34	14	55817595	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	566215	55817595	51531945	465	120273											
ARID4A	5926	broad.mit.edu	37	chr14	58827597	58827597	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcattggcccttctcatAcattttgttgttgttgccca	7	10	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58827597	G	G	58827597	1	3	134	0	1	0	0	0	0	0	0	0	921	406	14	5		5	ARID4A	14	58827597	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3010002	58827597	48521943	466	120274											
PPM1A	5494	broad.mit.edu	37	chr14	60749298	60749298	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaatgtctgcttatcgcgAgttgtgaattcccgcatatc	9	9	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60749298	T	T	60749298	1	4	134	0	1	0	0	0	0	0	0	0	12436	319	11	5		5	PPM1A	14	60749298	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	1921701	60749298	46600242	467	120275											
PRKCH	5583	broad.mit.edu	37	chr14	61917613	61917613	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaagttcagcatccacaaCtacaaagtgccaacattctg	5	13	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61917613	T	T	61917613	2	4	134	1	0	0	0	0	0	0	0	1	12619	564	20	4		4	PRKCH	14	61917613	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	1168315	61917613	45431927	468	120276											
FNTB	2342	broad.mit.edu	37	chr14	65418232	65418232	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaggcgaactgtatttagGggatccgtggcacagacatc	13	9	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65418232	A	A	65418232	1	1	134	0	1	0	0	0	0	0	0	0	6036	1247	43	4		4	FNTB	14	65418232	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3500619	65418232	41931308	469	120277											
PAPLN	89932	broad.mit.edu	37	chr14	73719804	73719804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcttggcagatgccaagGggtgggccaggggtcaggcc	19	9	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73719804	T	T	73719804	1	4	134	0	1	0	0	0	0	0	0	0	11522	1247	43	2		2	PAPLN	14	73719804	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	8301572	73719804	33629736	470	120278											
LTBP2	4053	broad.mit.edu	37	chr14	74969272	74969272	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcccagtcctcaccctgcTggcaatatgactagcaggtg	9	14	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74969272	A	A	74969272	1	1	134	0	1	0	0	0	0	0	0	0	9161	1595	55	5		5	LTBP2	14	74969272	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	1249468	74969272	32380268	471	120279											
RPS6KL1	83694	broad.mit.edu	37	chr14	75388074	75388074	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgcgctccagggccagccgGatctgcgtggccgcatccac	13	17	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75388074	T	T	75388074	2	4	134	1	0	0	0	0	0	0	0	1	13770	1164	41	3		3	RPS6KL1	14	75388074	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	418802	75388074	31961466	472	120280											
MLH3	27030	broad.mit.edu	37	chr14	75515141	75515141	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttcacagcttttgactgCaaattaaacatctcatagga	5	9	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75515141	T	T	75515141	2	4	134	1	0	0	0	0	0	0	0	1	9711	709	25	4		4	MLH3	14	75515141	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	127067	75515141	31834399	473	120281											
TSHR	7253	broad.mit.edu	37	chr14	81534648	81534648	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggaatcacactccttctAcaatttgagtaaagtgactc	7	10	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81534648	G	G	81534648	3	3	134	1	0	0	0	0	1	0	0	0	16747	391	14	5	303	5	TSHR	14	81534648	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	6019507	81534648	25814892	474	120282											
BTBD7	55727	broad.mit.edu	37	chr14	93709365	93709365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctctggaagcctcctgtCcttgagtgacagtgtggaca	12	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93709365	A	A	93709365	3	1	134	1	0	0	0	0	1	0	0	0	1556	855	30	3	749	3	BTBD7	14	93709365	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	12174717	93709365	13640175	475	120283											
KIAA1409	57578	broad.mit.edu	37	chr14	94139777	94139777	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaatctcctttaccagaTacaaaccttcttctgcttgt	3	13	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94139777	A	A	94139777	3	1	134	1	0	0	0	0	1	0	0	0	8300	1403	49	5	6457	5	KIAA1409	14	94139777	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	430412	94139777	13209763	476	120284											
SERPINA11	256394	broad.mit.edu	37	chr14	94912994	94912994	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttttcaagagagcaactCtgggtagacacacacaaaac	7	11	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94912994	A	A	94912994	1	1	134	0	1	0	0	0	0	0	0	0	14201	928	32	3		3	SERPINA11	14	94912994	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	773217	94912994	12436546	477	120285											
TCL1B	9623	broad.mit.edu	37	chr14	96157078	96157078	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctggtcccttcagtatgaAcccagcatcacagtgcactt	7	13	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96157078	C	C	96157078	3	2	134	1	0	0	0	0	1	0	0	0	15827	40	2	5	174	5	TCL1B	14	96157078	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	1244084	96157078	11192462	478	120286											
BEGAIN	57596	broad.mit.edu	37	chr14	101004814	101004814	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggagtaggcgccgatgTcctccacgctcaggggacgc	16	12	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101004814	C	C	101004814	3	2	134	1	0	0	0	0	1	0	0	0	1402	1667	58	5	511	5	BEGAIN	14	101004814	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	4847736	101004814	6344726	479	120287											
TNFAIP2	7127	broad.mit.edu	37	chr14	103599232	103599232	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggctctgggctggtgGctgggtcttggggagttggg	23	5	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103599232	C	C	103599232	1	2	134	0	1	0	0	0	0	0	0	0	16396	1218	42	4		4	TNFAIP2	14	103599232	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2594418	103599232	3750308	480	120288											
OR4N4	283694	broad.mit.edu	37	chr15	22382661	22382661	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccctctatttatttctGggcaacttggccttcctgga	8	14	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22382661	T	T	22382661	2	4	134	1	0	0	0	0	0	0	0	1	11172	1335	47	2		2	OR4N4	15	22382661	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08		22382661	80148731	481	120289											
PLA2G4F	255189	broad.mit.edu	37	chr15	42445714	42445714	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccaggccattgcctccaGgccaggcctccaaggccagt	11	16	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42445714	A	A	42445714	1	1	134	0	1	0	0	0	0	0	0	0	12101	1015	35	4		4	PLA2G4F	15	42445714	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	20063053	42445714	60085678	482	120290											
TMEM62	80021	broad.mit.edu	37	chr15	43432452	43432452	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cataacgtggctgtaactgtCttcctattattgcaagaaca	7	9	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43432452	G	G	43432452	1	3	134	0	1	0	0	0	0	0	0	0	16312	928	32	4		4	TMEM62	15	43432452	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	986738	43432452	59098940	483	120291											
MYEF2	50804	broad.mit.edu	37	chr15	48435217	48435217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaaatctgactgttccaCagccttttgactttccattc	5	12	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48435217	A	A	48435217	3	1	134	1	0	0	0	0	1	0	0	0	10118	478	17	3	115	3	MYEF2	15	48435217	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	5002765	48435217	54096175	484	120292											
BNIP2	663	broad.mit.edu	37	chr15	59969157	59969157	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagcatgatcctctctgctGccatcttcatcaccctctta	4	16	5	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59969157	C	C	59969157	1	2	134	0	1	0	0	0	0	0	0	0	1483	1334	46	4		4	BNIP2	15	59969157	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	11533940	59969157	42562235	485	120293											
HERC1	8925	broad.mit.edu	37	chr15	63922840	63922840	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctatcaggcgatctgaaAaaaacaaaacaaaaacatgt	6	8	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63922840	G	G	63922840	1	3	134	0	1	0	0	0	0	0	0	0	7124	29	1	5		5	HERC1	15	63922840	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	3953683	63922840	38608552	486	120294											
C15orf39	56905	broad.mit.edu	37	chr15	75499431	75499431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcttacccctacccctctGcccctctcccagcaccctct	3	24	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75499431	T	T	75499431	3	4	134	1	0	0	0	0	1	0	0	0	1806	1319	46	3	1044	3	C15orf39	15	75499431	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	11576591	75499431	27031961	487	120295											
MEX3B	84206	broad.mit.edu	37	chr15	82336286	82336286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgctgggtagccgctgCgctgctgctggtcccgccgc	16	16	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82336286	A	A	82336286	3	1	134	1	0	0	0	0	1	0	0	0	9603	768	27	3	788	3	MEX3B	15	82336286	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	6836855	82336286	20195106	488	120296											
PTX4	390667	broad.mit.edu	37	chr16	1537678	1537678	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcagggcgtccctctgGgccttgtgtgccttcctttc	11	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1537678	T	T	1537678	2	4	134	1	0	0	0	0	0	0	0	1	12931	1219	43	2		2	PTX4	16	1537678	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08		1537678	88817075	489	120297											
GPR139	124274	broad.mit.edu	37	chr16	20043958	20043958	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttctgtcttcttgccaccAgctgggagaggatgatcact	10	11	4	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043958	T	T	20043958	3	4	134	1	0	0	0	0	1	0	0	0	6713	188	7	5	904	5	GPR139	16	20043958	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	18506280	20043958	70310795	490	120298											
ACSM5	54988	broad.mit.edu	37	chr16	20429402	20429402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggacaccgccccccaaatCctgccttctggtgggtcaat	9	16	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20429402	A	A	20429402	3	1	134	1	0	0	0	0	1	0	0	0	187	855	30	3	232	3	ACSM5	16	20429402	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	385444	20429402	69925351	491	120299											
DNAH3	55567	broad.mit.edu	37	chr16	20986391	20986391	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaactcctaacctcaggtGatccacctcccttggtctcc	6	16	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20986391	T	T	20986391	1	4	134	0	1	0	0	0	0	0	0	0	4643	1305	45	3		3	DNAH3	16	20986391	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	556989	20986391	69368362	492	120300											
DNAH3	55567	broad.mit.edu	37	chr16	21033453	21033453	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacctccatgagacttggaGacatgatcaacaagtgagtt	9	8	1	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21033453	A	A	21033453	1	1	134	0	1	0	0	0	0	0	0	0	4643	957	33	4		4	DNAH3	16	21033453	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	47062	21033453	69321300	493	120301											
KIAA0556	23247	broad.mit.edu	37	chr16	27585278	27585278	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcacgagagaaaaaggagGtaaatgtgtccctggcgagg	15	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27585278	T	T	27585278	5	4	134	1	0	0	0	0	0	0	1	0	8253	1275	44	3	70	3	KIAA0556	16	27585278	Splice_Site	SNP	G	TCGA-49-4488-01A-01D-1753-08	6551825	27585278	62769475	494	120302											
ATP2A1	487	broad.mit.edu	37	chr16	28915207	28915207	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgcgcttccagtcAgggtgggccgctggcctccc	14	16	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28915207	C	C	28915207	1	2	134	0	1	0	0	0	0	0	0	0	1140	203	7	5		5	ATP2A1	16	28915207	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	1329929	28915207	61439546	495	120303											
ABCC11	85320	broad.mit.edu	37	chr16	48234395	48234395	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccccgctctccaatctgcAgacaggcagtaaaaggcacc	10	15	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48234395	G	G	48234395	1	3	134	0	1	0	0	0	0	0	0	0	51	203	7	5		5	ABCC11	16	48234395	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	19319188	48234395	42120358	496	120304											
ZNF423	23090	broad.mit.edu	37	chr16	49669627	49669627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactggtctccggcgtgaGgtcacggtggtccacctgca	13	15	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49669627	T	T	49669627	3	4	134	1	0	0	0	0	1	0	0	0	18025	1000	35	2	438	2	ZNF423	16	49669627	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1435232	49669627	40685126	497	120305											
MMP2	4313	broad.mit.edu	37	chr16	55517816	55517816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatatacttgtatgttcaCatacacacacacactcaaac	3	12	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55517816	A	A	55517816	1	1	134	0	1	0	0	0	0	0	0	0	9751	493	17	3		3	MMP2	16	55517816	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	5848189	55517816	34836937	498	120306											
NLRC5	84166	broad.mit.edu	37	chr16	57111855	57111855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattcctctcctcttccagGcttggctgcaatgccctggg	9	15	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57111855	T	T	57111855	3	4	134	1	0	0	0	0	1	0	0	0	10565	1217	42	3	5166	3	NLRC5	16	57111855	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1594039	57111855	33242898	499	120307											
GPR97	222487	broad.mit.edu	37	chr16	57719910	57719910	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtattgggaggtggggaagaGggtggtttgcaagacacagg	20	3	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57719910	C	C	57719910	1	2	134	0	1	0	0	0	0	0	0	0	6786	1015	35	4		4	GPR97	16	57719910	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	608055	57719910	32634843	500	120308											
CSNK2A2	1459	broad.mit.edu	37	chr16	58198103	58198103	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggtggtgagtgctgagaGaagcccatggcaaacccacc	14	11	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58198103	A	A	58198103	1	1	134	0	1	0	0	0	0	0	0	0	3992	957	33	4		4	CSNK2A2	16	58198103	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	478193	58198103	32156650	501	120309											
DPEP3	64180	broad.mit.edu	37	chr16	68012481	68012481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctgctccagggcgaggcGcacggcagtctggtcctggg	16	12	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68012481	T	T	68012481	3	4	134	1	0	0	0	0	1	0	0	0	4755	1087	38	3	1035	3	DPEP3	16	68012481	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	9814378	68012481	22342272	502	120310											
TAT	6898	broad.mit.edu	37	chr16	71604626	71604626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgaatgaggatccagcCcaacctccagccaggaacca	9	14	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71604626	A	A	71604626	3	1	134	1	0	0	0	0	1	0	0	0	15709	623	22	2	516	2	TAT	16	71604626	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	3592145	71604626	18750127	503	120311											
CA5A	763	broad.mit.edu	37	chr16	87936058	87936058	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacacgcctatcacagccaaAccattctctcccacgacagc	4	18	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87936058	T	T	87936058	2	4	134	1	0	0	0	0	0	0	0	1	2545	30	2	5		5	CA5A	16	87936058	Silent	SNP	A	TCGA-49-4488-01A-01D-1753-08	16331432	87936058	2418695	504	120312											
TRPV3	162514	broad.mit.edu	37	chr17	3424415	3424415	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcctgcttcccaccctctCccaccccccaccctaactgt	2	24	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3424415	A	A	3424415	1	1	134	0	1	0	0	0	0	0	0	0	16722	870	30	3		3	TRPV3	17	3424415	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08		3424415	77770795	505	120313											
TP53	7157	broad.mit.edu	37	chr17	7579312	7579312	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccctcagggcaactgacCgtgcaagtcacagacttggc	11	14	2	2	rs55863639		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7579312	A	A	7579312	2	1	134	1	0	0	0	0	0	0	0	1	16505	666	23	1		1	TP53	17	7579312	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	4154897	7579312	73615898	506	120314											
MYH2	4620	broad.mit.edu	37	chr17	10439865	10439865	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctgaaaagggcagacacTgtctggaaagaagagccctt	11	9	2	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10439865	G	G	10439865	2	3	134	1	0	0	0	0	0	0	0	1	10129	1567	55	5		5	MYH2	17	10439865	Silent	SNP	T	TCGA-49-4488-01A-01D-1753-08	2860553	10439865	70755345	507	120315											
NCOR1	9611	broad.mit.edu	37	chr17	15974580	15974580	+	Intron	DEL	A	-	-													tccagcctggtccacagaggAaaaaaaaaaaaggtacagga							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15974580	-	-	15974580	6	5	134	0	1	1	0	1	0	0	0	0	10330	261	9	0		0	NCOR1	17	15974580	Intron	DEL	A	TCGA-49-4488-01A-01D-1753-08	5534715	15974580	65220630	508	120316											
NF1	4763	broad.mit.edu	37	chr17	29553702	29553702	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaatatgatgtcaacaGgtaaatgtgaatagtggttt	10	4	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29553702	T	T	29553702	4	4	134	1	0	0	0	0	0	1	0	0	10451	1014	35	2	2382	2	NF1	17	29553702	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	13579122	29553702	51641508	509	120317											
SPACA3	124912	broad.mit.edu	37	chr17	31318959	31318959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgccattgtcaccatGgtctcagctctgcggggagc	13	13	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31318959	T	T	31318959	3	4	134	1	0	0	0	0	1	0	0	0	15087	1348	47	2	5	2	SPACA3	17	31318959	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1765257	31318959	49876251	510	120318											
DDX52	11056	broad.mit.edu	37	chr17	35979858	35979858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtattctggtacaggacacCcagcctgctgtataacatta	8	10	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35979858	A	A	35979858	3	1	134	1	0	0	0	0	1	0	0	0	4403	623	22	2	207	2	DDX52	17	35979858	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	4660899	35979858	45215352	511	120319											
KRTAP4-3	85290	broad.mit.edu	37	chr17	39324029	39324029	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggagatacagcagctGgggcggcagcaggtggtctg	18	9	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39324029	T	T	39324029	2	4	134	1	0	0	0	0	0	0	0	1	8624	1335	47	2		2	KRTAP4-3	17	39324029	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	3344171	39324029	41871181	512	120320											
KRT33A	3883	broad.mit.edu	37	chr17	39506806	39506806	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccagctgacgcaccttctCcaggtagctggccaggcggt	12	15	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39506806	A	A	39506806	4	1	134	1	0	0	0	0	0	1	0	0	8540	864	30	3	1028	3	KRT33A	17	39506806	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	182777	39506806	41688404	513	120321											
EZH1	2145	broad.mit.edu	37	chr17	40870094	40870094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcatgaaaagctggaaaaCaaaaactgtcttgttgccag	10	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40870094	A	A	40870094	1	1	134	0	1	0	0	0	0	0	0	0	5376	493	17	3		3	EZH1	17	40870094	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1363288	40870094	40325116	514	120322											
KIF2B	84643	broad.mit.edu	37	chr17	51901793	51901793	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagccggaaaaggcagctgGaaggggcagagattaacaag	15	8	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901793	T	T	51901793	4	4	134	1	0	0	0	0	0	1	0	0	8368	1175	41	3	1401	3	KIF2B	17	51901793	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	11031699	51901793	29293417	515	120323											
KCNH6	81033	broad.mit.edu	37	chr17	61600876	61600876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtatgttggggcgggGggacgatctggagtcctggt	20	5	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61600876	T	T	61600876	1	4	134	0	1	0	0	0	0	0	0	0	8106	1247	43	2		2	KCNH6	17	61600876	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	9699083	61600876	19594334	516	120324											
RECQL5	9400	broad.mit.edu	37	chr17	73627305	73627305	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctctgccttcatccccGctgcctccagaaccttcgtc	5	19	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73627305	A	A	73627305	2	1	134	1	0	0	0	0	0	0	0	1	13311	1078	38	4		4	RECQL5	17	73627305	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	12026429	73627305	7567905	517	120325											
LAMA1	284217	broad.mit.edu	37	chr18	7080334	7080334	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccggcactgtgggtttcGgacgggccgacctggcacat	15	12	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7080334	T	T	7080334	2	4	134	1	0	0	0	0	0	0	0	1	8677	1124	39	1		1	LAMA1	18	7080334	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08		7080334	70996914	518	120326											
ASXL3	80816	broad.mit.edu	37	chr18	31323882	31323882	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaaacctctccactagctCtgtcttgattcccccaatgg	6	16	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323882	A	A	31323882	3	1	134	1	0	0	0	0	1	0	0	0	1072	913	32	3	4116	3	ASXL3	18	31323882	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	24243548	31323882	46753366	519	120327											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60036389	60036389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccctgtgcaggactgattgGactcccatgtcctctgaaaa	9	13	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60036389	T	T	60036389	3	4	134	1	0	0	0	0	1	0	0	0	16407	1183	41	3	1273	3	TNFRSF11A	18	60036389	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	28712507	60036389	18040859	520	120328											
VAV1	7409	broad.mit.edu	37	chr19	6836607	6836607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggccacaagagtgatgGggtgggacccaagtgtaggg	19	7	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6836607	T	T	6836607	1	4	134	0	1	0	0	0	0	0	0	0	17258	1247	43	2		2	VAV1	19	6836607	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08		6836607	52292376	521	120329											
MUC16	94025	broad.mit.edu	37	chr19	9063963	9063963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcaatccaggggtcaggGaggaagctagctctgtctga	13	11	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9063963	T	T	9063963	3	4	134	1	0	0	0	0	1	0	0	0	10067	1174	41	3	20368	3	MUC16	19	9063963	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2227356	9063963	50065020	522	120330											
MUC16	94025	broad.mit.edu	37	chr19	9067932	9067932	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaagagctggttttttccAcagagggtgggcttgtccct	14	8	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9067932	T	T	9067932	3	4	134	1	0	0	0	0	1	0	0	0	10067	159	6	5	24337	5	MUC16	19	9067932	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	3969	9067932	50061051	523	120331											
MUC16	94025	broad.mit.edu	37	chr19	9088957	9088957	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagtcattaaacgtgtctCtattggtctgtgacattgtt	9	7	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9088957	A	A	9088957	3	1	134	1	0	0	0	0	1	0	0	0	10067	913	32	3	41001	3	MUC16	19	9088957	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	21025	9088957	50040026	524	120332											
COL5A3	50509	broad.mit.edu	37	chr19	10104534	10104535	+	Intron	DNP	CC	AA	AA													tgagccttccctgtacccctCcaccaaattaggaacccaac							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	10104535	AA	AA	10104534	1	1	134	0	1	0	0	0	0	0	0	0	3730	870	30	3		3	COL5A3	19	10104534	Intron	DNP	CC	TCGA-49-4488-01A-01D-1753-08	1015577	10104534	49024449	525	120333											
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10225118	10225118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacgtggatgctcggcggCgctggagcacccgctgcccg	15	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10225118	A	A	10225118	3	1	134	1	0	0	0	0	1	0	0	0	12385	768	27	3		3	PPAN-P2RY11	19	10225118	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	120584	10225118	48903865	526	120334											
KEAP1	9817	broad.mit.edu	37	chr19	10602727	10602727	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatctcgcacttctgcagcTgcatctgcaggaagttcggc	12	12	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602727	A	A	10602727	3	1	134	1	0	0	0	0	1	0	0	0	8211	1580	55	5	1039	5	KEAP1	19	10602727	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	377609	10602727	48526256	527	120335											
DNM2	1785	broad.mit.edu	37	chr19	10886572	10886572	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcaagctggccaaggaagtCgatccccaaggtaaccctga	10	13	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10886572	T	T	10886572	2	4	134	1	0	0	0	0	0	0	0	1	4712	871	31	4		4	DNM2	19	10886572	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	283845	10886572	48242411	528	120336											
SLC1A6	6511	broad.mit.edu	37	chr19	15064949	15064949	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctacccaagccccctcacctGatggttgtgatctgacccag	8	16	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15064949	A	A	15064949	2	1	134	1	0	0	0	0	0	0	0	1	14549	1280	45	4		4	SLC1A6	19	15064949	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	4178377	15064949	44064034	529	120337											
NOTCH3	4854	broad.mit.edu	37	chr19	15291560	15291560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtccgctccatccagggGgacaaaggcaataggcccca	13	14	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15291560	T	T	15291560	3	4	134	1	0	0	0	0	1	0	0	0	10645	1232	43	2	3951	2	NOTCH3	19	15291560	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	226611	15291560	43837423	530	120338											
UNC13A	23025	broad.mit.edu	37	chr19	17758168	17758168	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcgccgtcttggtcacCgcgaagatctcctggatgag	14	11	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17758168	A	A	17758168	2	1	134	1	0	0	0	0	0	0	0	1	17110	639	23	1		1	UNC13A	19	17758168	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	2466608	17758168	41370815	531	120339											
CRLF1	9244	broad.mit.edu	37	chr19	18710443	18710443	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcacacgaggttgtcccccGaccgctgcctggacccattg	12	16	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18710443	T	T	18710443	4	4	134	1	0	0	0	0	0	1	0	0	3918	1059	37	3	971	3	CRLF1	19	18710443	Nonsense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	952275	18710443	40418540	532	120340											
KLHL26	55295	broad.mit.edu	37	chr19	18778916	18778916	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgtccgctggctgcagcatGacccggcccggcggccgcgc	15	19	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18778916	T	T	18778916	3	4	134	1	0	0	0	0	1	0	0	0	8452	1290	45	3	719	3	KLHL26	19	18778916	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	68473	18778916	40350067	533	120341											
CRTC1	23373	broad.mit.edu	37	chr19	18888325	18888325	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccgccaagcgccccccgcCagcccgcccccggttgtcca	10	23	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18888325	T	T	18888325	1	4	134	0	1	0	0	0	0	0	0	0	3931	609	21	4		4	CRTC1	19	18888325	3'UTR	SNP	C	TCGA-49-4488-01A-01D-1753-08	109409	18888325	40240658	534	120342											
ZNF429	353088	broad.mit.edu	37	chr19	21720876	21720876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagatcgagaccgtcctgGctaacatggtgaaaccccgt	12	11	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21720876	T	T	21720876	3	4	134	1	0	0	0	0	1	0	0	0	18029	1203	42	3	2035	3	ZNF429	19	21720876	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2832551	21720876	37408107	535	120343											
CCDC123	84902	broad.mit.edu	37	chr19	33422323	33422323	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaaagctgattttcacaatCggaaacgttacctcttcctt	6	10	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33422323	T	T	33422323	1	4	134	0	1	0	0	0	0	0	0	0	2785	899	31	4		4	CCDC123	19	33422323	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	11701447	33422323	25706660	536	120344											
GRAMD1A	57655	broad.mit.edu	37	chr19	35500298	35500298	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggccggtgatctaggggctCatcctgactcctctcctttt	10	13	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35500298	T	T	35500298	1	4	134	0	1	0	0	0	0	0	0	0	6813	841	29	4		4	GRAMD1A	19	35500298	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2077975	35500298	23628685	537	120345											
SIPA1L3	23094	broad.mit.edu	37	chr19	38600811	38600811	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtggcagtggtccaggcagGacccgtcaggccgacctgtg	16	12	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38600811	T	T	38600811	1	4	134	0	1	0	0	0	0	0	0	0	14444	1189	41	3		3	SIPA1L3	19	38600811	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3100513	38600811	20528172	538	120346											
RYR1	6261	broad.mit.edu	37	chr19	38949803	38949803	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacacgtggcacgcccaGtgacttccccagggcagcac	12	16	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38949803	T	T	38949803	3	4	134	1	0	0	0	0	1	0	0	0	13879	1029	36	3	2259	3	RYR1	19	38949803	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	348992	38949803	20179180	539	120347											
TMEM145	284339	broad.mit.edu	37	chr19	42821933	42821933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcattggactgcaggtgGcggcctacgtgtggttctgc	16	10	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42821933	T	T	42821933	3	4	134	1	0	0	0	0	1	0	0	0	16182	1203	42	3	1019	3	TMEM145	19	42821933	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	3872130	42821933	16307050	540	120348											
PSG1	5669	broad.mit.edu	37	chr19	43373362	43373362	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctaagggctcaaagactgtGaggccgccttctctgtctta	10	11	4	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43373362	T	T	43373362	1	4	134	0	1	0	0	0	0	0	0	0	12759	1305	45	3		3	PSG1	19	43373362	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	551429	43373362	15755621	541	120349											
PSG6	5675	broad.mit.edu	37	chr19	43519858	43519858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggagagagactgagaggCctggcccctggtcgtttgga	16	10	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43519858	A	A	43519858	1	1	134	0	1	0	0	0	0	0	0	0	12765	754	26	3		3	PSG6	19	43519858	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	146496	43519858	15609125	542	120350											
ZNF285	26974	broad.mit.edu	37	chr19	44891284	44891284	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagcccttcccacactcttCacatttatagggctttttcc	4	14	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44891284	A	A	44891284	4	1	134	1	0	0	0	0	0	1	0	0	17948	835	29	3	653	3	ZNF285	19	44891284	Nonsense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1371426	44891284	14237699	543	120351											
CKM	1158	broad.mit.edu	37	chr19	45811588	45811588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcagggcttagtatagGggaaggggcggggcctcgga	22	6	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45811588	T	T	45811588	1	4	134	0	1	0	0	0	0	0	0	0	3479	1247	43	2		2	CKM	19	45811588	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	920304	45811588	13317395	544	120352											
PGLYRP1	8993	broad.mit.edu	37	chr19	46522723	46522723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggggcttccccgaaggGgaagtgatagcgtagggccc	18	10	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46522723	T	T	46522723	1	4	134	0	1	0	0	0	0	0	0	0	11888	1247	43	2		2	PGLYRP1	19	46522723	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	711135	46522723	12606260	545	120353											
PLA2G4C	8605	broad.mit.edu	37	chr19	48558213	48558213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaggatgtagcagctggCgggggccttggaccacaaat	14	9	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48558213	A	A	48558213	3	1	134	1	0	0	0	0	1	0	0	0	12098	768	27	3	290	3	PLA2G4C	19	48558213	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2035490	48558213	10570770	546	120354											
CGB	1082	broad.mit.edu	37	chr19	49558527	49558527	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgctcctccagaaagaggcGtccttccacagctcacactg	8	16	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49558527	C	C	49558527	1	2	134	0	1	0	0	0	0	0	0	0	3326	1160	40	4		4	CGB	19	49558527	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1000314	49558527	9570456	547	120355											
AP2A1	160	broad.mit.edu	37	chr19	50296349	50296349	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtcgcgcctgagccgGgtgggtgtggcctagatatt	17	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50296349	T	T	50296349	2	4	134	1	0	0	0	0	0	0	0	1	741	1246	43	2		2	AP2A1	19	50296349	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	737822	50296349	8832634	548	120356											
SIGLEC9	27180	broad.mit.edu	37	chr19	51628941	51628941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctgtgccctgggcctGtgagcaggggacacccccta	13	15	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51628941	T	T	51628941	3	4	134	1	0	0	0	0	1	0	0	0	14428	1377	48	3	515	3	SIGLEC9	19	51628941	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1332592	51628941	7500042	549	120357											
CACNG6	59285	broad.mit.edu	37	chr19	54496081	54496081	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgctcccgcccctcgagGcccttcgccggctctgcctc	9	23	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54496081	T	T	54496081	1	4	134	0	1	0	0	0	0	0	0	0	2587	1218	42	3		3	CACNG6	19	54496081	5'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	2867140	54496081	4632902	550	120358											
KIR3DL1	3811	broad.mit.edu	37	chr19	55346499	55346499	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaggccttgtttgcctGcaaatggatcttccatcatg	10	9	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55346499	A	A	55346499	1	1	134	0	1	0	0	0	0	0	0	0	8391	1334	46	4		4	KIR3DL1	19	55346499	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	850418	55346499	3782484	551	120359											
KIR3DL1	3811	broad.mit.edu	37	chr19	55377959	55377959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaccctccctcactcaGcatttccctctctccaggac	5	19	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55377959	T	T	55377959	1	4	134	0	1	0	0	0	0	0	0	0	8391	986	34	3		3	KIR3DL1	19	55377959	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	31460	55377959	3751024	552	120360											
SYT5	6861	broad.mit.edu	37	chr19	55690358	55690358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggctgatgcgactggagtCgggaggcgtgtcgggcgatg	21	7	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55690358	A	A	55690358	3	1	134	1	0	0	0	0	1	0	0	0	15596	884	31	3	1140	3	SYT5	19	55690358	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	312399	55690358	3438625	553	120361											
ZNF71	58491	broad.mit.edu	37	chr19	57133832	57133832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaagaagcacttcacgGggcgctcgtccctcatcgtg	11	14	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57133832	T	T	57133832	3	4	134	1	0	0	0	0	1	0	0	0	18242	1232	43	2	1179	2	ZNF71	19	57133832	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1443474	57133832	1995151	554	120362											
ZSCAN4	201516	broad.mit.edu	37	chr19	58189585	58189585	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcgaaaactactcgagTaaatgaaaatattactaatc	4	7	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58189585	A	A	58189585	3	1	134	1	0	0	0	0	1	0	0	0	18366	1638	57	5	624	5	ZSCAN4	19	58189585	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	1055753	58189585	939398	555	120363											
ZNF135	7694	broad.mit.edu	37	chr19	58572931	58572931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttggcttggctgaggacaCtcgtgtgatgtttcaggagc	16	7	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58572931	A	A	58572931	1	1	134	0	1	0	0	0	0	0	0	0	17851	580	20	3		3	ZNF135	19	58572931	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	383346	58572931	556052	556	120364											
TGM3	7053	broad.mit.edu	37	chr20	2297667	2297667	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcatgtcagtctccctagGaaaggcattagtgctgactc	10	11	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2297667	A	A	2297667	1	1	134	0	1	0	0	0	0	0	0	0	15954	1189	41	4		4	TGM3	20	2297667	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08		2297667	60727853	557	120365											
SIGLEC1	6614	broad.mit.edu	37	chr20	3684006	3684006	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgtaccagctgtagcggaGatcactgggtgcctcattgg	13	10	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3684006	A	A	3684006	3	1	134	1	0	0	0	0	1	0	0	0	14418	942	33	4	4131	4	SIGLEC1	20	3684006	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	1386339	3684006	59341514	558	120366											
CENPB	1059	broad.mit.edu	37	chr20	3766048	3766048	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaagtgcagggcctccgtGagacccagctgcaggcctga	13	13	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3766048	A	A	3766048	2	1	134	1	0	0	0	0	0	0	0	1	3257	1277	45	4		4	CENPB	20	3766048	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	82042	3766048	59259472	559	120367											
BTBD3	22903	broad.mit.edu	37	chr20	11904038	11904038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagattgaacttaagcggcaGggcgttgtcctggggcagaa	15	7	0	3	rs150807132		TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11904038	T	T	11904038	3	4	134	1	0	0	0	0	1	0	0	0	1554	991	35	2	1307	2	BTBD3	20	11904038	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	8137990	11904038	51121482	560	120368											
SEL1L2	80343	broad.mit.edu	37	chr20	13866816	13866816	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtagggtgagagaggagggcGggtctccccccattcctatt	15	10	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13866816	C	C	13866816	1	2	134	0	1	0	0	0	0	0	0	0	14124	1131	39	4		4	SEL1L2	20	13866816	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	1962778	13866816	49158704	561	120369											
DEFB116	245930	broad.mit.edu	37	chr20	29891154	29891154	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttgggcaggttaagtatTggatttcatattctctgcag	10	6	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29891154	A	A	29891154	3	1	134	1	0	0	0	0	1	0	0	0	4444	1812	63	5	141	5	DEFB116	20	29891154	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	16024338	29891154	33134366	562	120370											
MAPRE1	22919	broad.mit.edu	37	chr20	31434328	31434328	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtctgtgttggggtttgAtcaaagaccacatctccttt	9	8	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31434328	G	G	31434328	1	3	134	0	1	0	0	0	0	0	0	0	9386	348	12	5		5	MAPRE1	20	31434328	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	1543174	31434328	31591192	563	120371											
EPB41L1	2036	broad.mit.edu	37	chr20	34809732	34809732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtaggtcccctcttgaGgctgctgccccaacaggacc	12	14	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34809732	T	T	34809732	1	4	134	0	1	0	0	0	0	0	0	0	5194	1015	35	2		2	EPB41L1	20	34809732	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3375404	34809732	28215788	564	120372											
ZNF831	128611	broad.mit.edu	37	chr20	57767000	57767000	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcagaagtcgccgaccgCcgggaagccgtgcgccctgc	15	15	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57767000	T	T	57767000	3	4	134	1	0	0	0	0	1	0	0	0	18314	739	26	4	928	4	ZNF831	20	57767000	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	22957268	57767000	5258520	565	120373											
TPTE	7179	broad.mit.edu	37	chr21	10934106	10934106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attatggaagtgcttaggatCgtaagctctttcacctaaaa	8	7	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934106	A	A	10934106	3	1	134	1	0	0	0	0	1	0	0	0	16554	884	31	3	820	3	TPTE	21	10934106	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08		10934106	37195789	566	120374											
TPTE	7179	broad.mit.edu	37	chr21	10935034	10935034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatcttacatatttacatGgcaccaacataagctatttc	3	10	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10935034	T	T	10935034	1	4	134	0	1	0	0	0	0	0	0	0	16554	1363	47	2		2	TPTE	21	10935034	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	928	10935034	37194861	567	120375											
TPTE	7179	broad.mit.edu	37	chr21	10969057	10969057	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttatgcatacgtgtgtcttCatgtatttataactcacctt	5	9	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10969057	A	A	10969057	1	1	134	0	1	0	0	0	0	0	0	0	16554	841	29	3		3	TPTE	21	10969057	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	34023	10969057	37160838	568	120376											
APP	351	broad.mit.edu	37	chr21	27354613	27354613	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagaggcaagctcaggTttcccaatatcgtagggctg	14	9	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27354613	C	C	27354613	1	2	134	0	1	0	0	0	0	0	0	0	817	1740	60	5		5	APP	21	27354613	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	16385556	27354613	20775282	569	120377											
GRIK1	2897	broad.mit.edu	37	chr21	31045554	31045554	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgtttattgccatttagTtaaactcgtttcaactccaa	4	8	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31045554	G	G	31045554	1	3	134	0	1	0	0	0	0	0	0	0	6839	1740	60	5		5	GRIK1	21	31045554	Intron	SNP	T	TCGA-49-4488-01A-01D-1753-08	3690941	31045554	17084341	570	120378											
TIAM1	7074	broad.mit.edu	37	chr21	32825492	32825492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacagtggtgttacggCggtggaaaaacttaaagttg	12	5	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32825492	A	A	32825492	1	1	134	0	1	0	0	0	0	0	0	0	16013	783	27	3		3	TIAM1	21	32825492	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1779938	32825492	15304403	571	120379											
HUNK	30811	broad.mit.edu	37	chr21	33331084	33331084	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctcccacgcttcggtgaAgcccgtgtccccagtcttcc	9	18	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33331084	T	T	33331084	1	4	134	0	1	0	0	0	0	0	0	0	7528	87	3	5		5	HUNK	21	33331084	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	505592	33331084	14798811	572	120380											
MORC3	23515	broad.mit.edu	37	chr21	37711173	37711173	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactggcagaacttgatgctAttataggcaagaaggggacg	13	6	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37711173	G	G	37711173	3	3	134	1	0	0	0	0	1	0	0	0	9797	449	16	5	580	5	MORC3	21	37711173	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	4380089	37711173	10418722	573	120381											
CLDN14	23562	broad.mit.edu	37	chr21	37858744	37858744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccatagaaacccgaggGccaaggccagctgaggatca	11	13	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37858744	T	T	37858744	1	4	134	0	1	0	0	0	0	0	0	0	3506	1218	42	3		3	CLDN14	21	37858744	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	147571	37858744	10271151	574	120382											
MX2	4600	broad.mit.edu	37	chr21	42780167	42780167	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagatccactgaagggcgGcgatgcctgtggttgttttc	14	8	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42780167	C	C	42780167	1	2	134	0	1	0	0	0	0	0	0	0	10092	1218	42	4		4	MX2	21	42780167	3'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08	4921423	42780167	5349728	575	120383											
UMODL1	89766	broad.mit.edu	37	chr21	43557548	43557548	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcctgtctcctccccgaGgtgagcctcctcatgcagaa	10	15	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43557548	T	T	43557548	5	4	134	1	0	0	0	0	0	0	1	0	17106	1014	35	2	4241	2	UMODL1	21	43557548	Splice_Site	SNP	G	TCGA-49-4488-01A-01D-1753-08	777381	43557548	4572347	576	120384											
PDE9A	5152	broad.mit.edu	37	chr21	44152096	44152096	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccacagcctccacccccCaacacgtgggattcgggctg	11	18	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44152096	T	T	44152096	1	4	134	0	1	0	0	0	0	0	0	0	11749	609	21	4		4	PDE9A	21	44152096	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	594548	44152096	3977799	577	120385											
PCBP3	54039	broad.mit.edu	37	chr21	47333749	47333749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaaactcggggaggtgtGgggagcgtggagctggtgca	21	6	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47333749	T	T	47333749	1	4	134	0	1	0	0	0	0	0	0	0	11596	1363	47	2		2	PCBP3	21	47333749	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	3181653	47333749	796146	578	120386											
COL6A1	1291	broad.mit.edu	37	chr21	47410247	47410247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcccccacggcagcatGtctgacctgcatctgactcc	8	17	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47410247	T	T	47410247	1	4	134	0	1	0	0	0	0	0	0	0	3731	1392	48	3		3	COL6A1	21	47410247	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	76498	47410247	719648	579	120387											
MCM3AP	8888	broad.mit.edu	37	chr21	47695089	47695089	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacactccacggggagatgCagggctctacctggtcagtc	12	14	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47695089	G	G	47695089	1	3	134	0	1	0	0	0	0	0	0	0	9481	725	25	4		4	MCM3AP	21	47695089	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	284842	47695089	434806	580	120388											
PCNT	5116	broad.mit.edu	37	chr21	47769209	47769209	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgcgcacgtttcctaccttCtaaatgctggatggccccat	8	13	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47769209	G	G	47769209	1	3	134	0	1	0	0	0	0	0	0	0	11684	928	32	4		4	PCNT	21	47769209	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	74120	47769209	360686	581	120389											
DIP2A	23181	broad.mit.edu	37	chr21	47976019	47976019	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaggtaggtcctctgaaAtcttgtttgcttcagcccct	10	10	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47976019	G	G	47976019	1	3	134	0	1	0	0	0	0	0	0	0	4567	116	4	5		5	DIP2A	21	47976019	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	206810	47976019	153876	582	120390											
POTEH	23784	broad.mit.edu	37	chr22	16279254	16279254	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgattaaaaatttcaccacTtgctgtttttgctcatgtac	5	8	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16279254	C	C	16279254	2	2	134	1	0	0	0	0	0	0	0	1	12363	1606	56	5		5	POTEH	22	16279254	Silent	SNP	T	TCGA-49-4488-01A-01D-1753-08		16279254	35025312	583	120391											
C22orf28	51493	broad.mit.edu	37	chr22	32789859	32789859	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaagagagcatttctaagGaagtttctgttttccttacc	8	8	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32789859	T	T	32789859	1	4	134	0	1	0	0	0	0	0	0	0	2162	1189	41	3		3	C22orf28	22	32789859	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	16510605	32789859	18514707	584	120392											
C22orf28	51493	broad.mit.edu	37	chr22	32792123	32792123	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagttcccagcagctgccaTtcccttcagatagtcttgac	7	13	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32792123	G	G	32792123	3	3	134	1	0	0	0	0	1	0	0	0	2162	1493	52	5	609	5	C22orf28	22	32792123	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	2264	32792123	18512443	585	120393											
CSNK1E	1454	broad.mit.edu	37	chr22	38776357	38776357	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttatgcatacgtgtgtcttCatgtatttataactcacctt	5	9	3	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38776357	A	A	38776357	1	1	134	0	1	0	0	0	0	0	0	0	3987	841	29	3		3	CSNK1E	22	38776357	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	5984234	38776357	12528209	586	120394											
ARFGAP3	26286	broad.mit.edu	37	chr22	43195156	43195156	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcagcacactggacagGctgtagttccctgcacacac	11	13	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43195156	C	C	43195156	3	2	134	1	0	0	0	0	1	0	0	0	853	1194	42	4	136	4	ARFGAP3	22	43195156	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	4418799	43195156	8109410	587	120395											
DHRSX	207063	broad.mit.edu	37	chrX	2139045	2139045	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctattggcaggtgcaatGtgtttcttggggcagcagct	14	7	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2139045	A	A	2139045	1	1	134	0	1	0	0	0	0	0	0	0	4539	1392	48	4		4	DHRSX	23	2139045	3'UTR	SNP	G	TCGA-49-4488-01A-01D-1753-08		2139045	153131515	588	120396											
XG	7499	broad.mit.edu	37	chrX	2688630	2688630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagatgcccttgatgaccCtggtaagtgccgatatttca	11	10	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2688630	A	A	2688630	3	1	134	1	0	0	0	0	1	0	0	0	17554	681	24	2	107	2	XG	23	2688630	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	549585	2688630	152581930	589	120397											
MXRA5	25878	broad.mit.edu	37	chrX	3235859	3235859	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgacgtcctggtagtgggAggctaggatttgaggttgct	17	5	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3235859	G	G	3235859	3	3	134	1	0	0	0	0	1	0	0	0	10097	304	11	5	2631	5	MXRA5	23	3235859	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	547229	3235859	152034701	590	120398											
MXRA5	25878	broad.mit.edu	37	chrX	3240143	3240143	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccagagaactctccacttGacttgaaatcttaatgtcag	6	10	3	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3240143	T	T	3240143	3	4	134	1	0	0	0	0	1	0	0	0	10097	1299	45	3	4915	3	MXRA5	23	3240143	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	4284	3240143	152030417	591	120399											
MOSPD2	158747	broad.mit.edu	37	chrX	14932587	14932587	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attagattgtcatttattctGattattacaaatgtcttatg	5	4	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14932587	A	A	14932587	1	1	134	0	1	0	0	0	0	0	0	0	9810	1305	45	4		4	MOSPD2	23	14932587	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	11692444	14932587	140337973	592	120400											
ACE2	59272	broad.mit.edu	37	chrX	15588557	15588557	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccttttcctccaaagatCccactaaagtgatagtaaag	5	10	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15588557	A	A	15588557	1	1	134	0	1	0	0	0	0	0	0	0	137	870	30	3		3	ACE2	23	15588557	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	655970	15588557	139682003	593	120401											
MAP3K15	389840	broad.mit.edu	37	chrX	19389565	19389565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtggtcgccatcacccgGtgctctggggagcggatgaa	15	10	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19389565	T	T	19389565	3	4	134	1	0	0	0	0	1	0	0	0	9341	1252	44	3	777	3	MAP3K15	23	19389565	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	3801008	19389565	135880995	594	120402											
ACOT9	23597	broad.mit.edu	37	chrX	23722141	23722141	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggagaaacttgtaatacCgtagaaaaccatcatatcat	6	8	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23722141	T	T	23722141	1	4	134	0	1	0	0	0	0	0	0	0	157	667	23	4		4	ACOT9	23	23722141	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	4332576	23722141	131548419	595	120403											
ACOT9	23597	broad.mit.edu	37	chrX	23723693	23723693	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggaaaccaccaaagatccGattgaaaatgttccgctcct	7	11	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23723693	T	T	23723693	2	4	134	1	0	0	0	0	0	0	0	1	157	1057	37	3		3	ACOT9	23	23723693	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	1552	23723693	131546867	596	120404											
POLA1	5422	broad.mit.edu	37	chrX	24755689	24755689	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtgcgtatgaagataaatCctctaatttgcatttgttat	7	6	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24755689	A	A	24755689	1	1	134	0	1	0	0	0	0	0	0	0	12282	870	30	3		3	POLA1	23	24755689	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	1031996	24755689	130514871	597	120405											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29938179	29938179	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttgaaaatggaaatggacGtcgacacgccagcgttctcc	11	10	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29938179	C	C	29938179	3	2	134	1	0	0	0	0	1	0	0	0	7731	1145	40	4	1051	4	IL1RAPL1	23	29938179	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	5182490	29938179	125332381	598	120406											
MAGEB1	4112	broad.mit.edu	37	chrX	30269550	30269550	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgagagatgaggaagagAgagcccaagtccgatccagt	13	8	0	5			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30269550	G	G	30269550	3	3	134	1	0	0	0	0	1	0	0	0	9264	296	11	5	942	5	MAGEB1	23	30269550	Missense_Mutation	SNP	A	TCGA-49-4488-01A-01D-1753-08	331371	30269550	125001010	599	120407											
MAGEB16	139604	broad.mit.edu	37	chrX	35820780	35820780	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacttctctgagatcctccTgagagcttctgagcacctag	8	14	2	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35820780	A	A	35820780	3	1	134	1	0	0	0	0	1	0	0	0	9266	1580	55	5	469	5	MAGEB16	23	35820780	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	5551230	35820780	119449780	600	120408											
FAM47C	442444	broad.mit.edu	37	chrX	37026557	37026557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctggtactgtgacaaacCgccttccaagtacttcgcga	9	14	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37026557	T	T	37026557	3	4	134	1	0	0	0	0	1	0	0	0	5622	652	23	4	76	4	FAM47C	23	37026557	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	1205777	37026557	118244003	601	120409											
SRPX	8406	broad.mit.edu	37	chrX	38031144	38031144	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcttacccacacaggaGgctggccggccgctccaggc	11	15	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38031144	T	T	38031144	2	4	134	1	0	0	0	0	0	0	0	1	15282	987	35	2		2	SRPX	23	38031144	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	1004587	38031144	117239416	602	120410											
RGN	9104	broad.mit.edu	37	chrX	46949272	46949272	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgtgaaaaagtactttgaCcaggtggacatttccaatgg	10	8	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46949272	T	T	46949272	2	4	134	1	0	0	0	0	0	0	0	1	13390	506	18	4		4	RGN	23	46949272	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	8918128	46949272	108321288	603	120411											
ZNF630	57232	broad.mit.edu	37	chrX	47919783	47919783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggatgtcagagatgtcaaGgaagaagaagatgcccgctt	13	7	2	4			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47919783	T	T	47919783	1	4	134	0	1	0	0	0	0	0	0	0	18181	1015	35	2		2	ZNF630	23	47919783	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	970511	47919783	107350777	604	120412											
DGKK	139189	broad.mit.edu	37	chrX	50119279	50119279	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agccctgggtacctgacttgGactcatgactccctcctgtt	9	14	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50119279	C	C	50119279	1	2	134	0	1	0	0	0	0	0	0	0	4512	1189	41	4		4	DGKK	23	50119279	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	2199496	50119279	105151281	605	120413											
XAGE5	170627	broad.mit.edu	37	chrX	52842245	52842245	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggtcagaagagagaagatGatcagggtgcagctgagatt	15	5	2	6			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52842245	T	T	52842245	3	4	134	1	0	0	0	0	1	0	0	0	17548	1290	45	3	160	3	XAGE5	23	52842245	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	2722966	52842245	102428315	606	120414											
HUWE1	10075	broad.mit.edu	37	chrX	53578393	53578393	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccgacggatgtcatcaGgcagggcagccagaaaagag	13	11	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53578393	T	T	53578393	3	4	134	1	0	0	0	0	1	0	0	0	7531	1000	35	2	4278	2	HUWE1	23	53578393	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	736148	53578393	101692167	607	120415											
WNK3	65267	broad.mit.edu	37	chrX	54224971	54224972	+	Missense_Mutation	DNP	GG	AT	AT													gcattccatatgatgataatGgcccaggaaatgaagggagt							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	54224972	AT	AT	54224971	3	1	134	1	0	0	0	0	1	0	0	0	17506	1348	47	4	217	4	WNK3	23	54224971	Missense_Mutation	DNP	GG	TCGA-49-4488-01A-01D-1753-08	646578	54224971	101045589	608	120416											
PFKFB1	5207	broad.mit.edu	37	chrX	54982650	54982650	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaattctctttagaaagtCttccagaaccttttcccggt	5	12	3	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54982650	A	A	54982650	3	1	134	1	0	0	0	0	1	0	0	0	11855	913	32	3	873	3	PFKFB1	23	54982650	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	757679	54982650	100287910	609	120417											
ZXDA	7789	broad.mit.edu	37	chrX	57936549	57936549	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcctgaccggagcccgcGgtctccacgtcgccacccac	12	20	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57936549	T	T	57936549	2	4	134	1	0	0	0	0	0	0	0	1	18379	1103	39	1		1	ZXDA	23	57936549	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	2953899	57936549	97334011	610	120418											
FAM123B	139285	broad.mit.edu	37	chrX	63413106	63413106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttctgctgtttgttcacGggtactcccagaggctgcag	11	10	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63413106	T	T	63413106	3	4	134	1	0	0	0	0	1	0	0	0	5469	1116	39	1	3350	1	FAM123B	23	63413106	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	5476557	63413106	91857454	611	120419											
EDA2R	60401	broad.mit.edu	37	chrX	65835889	65835889	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctgtgggtagagaacaCaagaactagcaagctagtgg	14	6	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65835889	A	A	65835889	1	1	134	0	1	0	0	0	0	0	0	0	4944	493	17	3		3	EDA2R	23	65835889	5'Flank	SNP	C	TCGA-49-4488-01A-01D-1753-08	2422783	65835889	89434671	612	120420											
MED12	9968	broad.mit.edu	37	chrX	70345265	70345265	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtttggggtgggaaagcagcGagatgatgcccgccatgcca	16	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70345265	A	A	70345265	3	1	134	1	0	0	0	0	1	0	0	0	9521	1058	37	4	2353	4	MED12	23	70345265	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	4509376	70345265	84925295	613	120421											
GJB1	2705	broad.mit.edu	37	chrX	70443781	70443781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccccatctcccatgtgcGgctgtggtccctgcagctca	9	17	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70443781	T	T	70443781	3	4	134	1	0	0	0	0	1	0	0	0	6471	1116	39	1	226	1	GJB1	23	70443781	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	98516	70443781	84826779	614	120422											
ZDHHC15	158866	broad.mit.edu	37	chrX	74649739	74649739	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgcatataattgagcaActttgacccctttagaggag	9	7	0	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74649739	C	C	74649739	1	2	134	0	1	0	0	0	0	0	0	0	17731	58	2	5		5	ZDHHC15	23	74649739	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	4205958	74649739	80620821	615	120423											
MAGEE2	139599	broad.mit.edu	37	chrX	75004593	75004593	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctggcttttcattctcatGaaattcaccaaagcaatcga	6	10	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75004593	A	A	75004593	2	1	134	1	0	0	0	0	0	0	0	1	9278	1281	45	4		4	MAGEE2	23	75004593	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	354854	75004593	80265967	616	120424											
PGK1	5230	broad.mit.edu	37	chrX	77381507	77381507	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcttcactgcaccctggAtttgcatacattcttcaaga	5	12	5	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77381507	G	G	77381507	1	3	134	0	1	0	0	0	0	0	0	0	11885	348	12	5		5	PGK1	23	77381507	3'UTR	SNP	A	TCGA-49-4488-01A-01D-1753-08	2376914	77381507	77889053	617	120425											
HDX	139324	broad.mit.edu	37	chrX	83599510	83599510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttgtaaacatagaaaaCttagcagttctagccagtaa	6	6	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83599510	A	A	83599510	1	1	134	0	1	0	0	0	0	0	0	0	7093	580	20	3		3	HDX	23	83599510	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	6218003	83599510	71671050	618	120426											
HDX	139324	broad.mit.edu	37	chrX	83730178	83730178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaattagtgacttcatacCctgaatattttttctcatat	3	7	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83730178	A	A	83730178	1	1	134	0	1	0	0	0	0	0	0	0	7093	638	22	2		2	HDX	23	83730178	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	130668	83730178	71540382	619	120427											
DACH2	117154	broad.mit.edu	37	chrX	85969820	85969820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcttcagtagtaactcagCtcattgactcagttagttag	8	8	5	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85969820	A	A	85969820	1	1	134	0	1	0	0	0	0	0	0	0	4254	812	28	3		3	DACH2	23	85969820	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	2239642	85969820	69300740	620	120428											
DRP2	1821	broad.mit.edu	37	chrX	100502238	100502238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctcattttcctcccaCcttggcaaaggttgttgatt	7	10	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100502238	A	A	100502238	1	1	134	0	1	0	0	0	0	0	0	0	4804	522	18	3		3	DRP2	23	100502238	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	14532418	100502238	54768322	621	120429											
NXF5	55998	broad.mit.edu	37	chrX	101095988	101095988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgagcctaaggcttcacCtcagggaaatttctttcagt	8	11	4	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101095988	A	A	101095988	3	1	134	1	0	0	0	0	1	0	0	0	10881	695	24	2	653	2	NXF5	23	101095988	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	593750	101095988	54174572	622	120430											
NXF3	56000	broad.mit.edu	37	chrX	102344041	102344042	+	Intron	DNP	CA	AT	AT													tgctaggagtttctgatctcCatctatactggaaaaacact							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	102344042	AT	AT	102344041	1	1	134	0	1	0	0	0	0	0	0	0	10880	609	21	2		2	NXF3	23	102344041	Intron	DNP	CA	TCGA-49-4488-01A-01D-1753-08	1248053	102344041	52926519	623	120431											
PLP1	5354	broad.mit.edu	37	chrX	103041586	103041586	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggaggggttccagaggCcaacatcaagctcattcttt	12	9	3	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103041586	A	A	103041586	2	1	134	1	0	0	0	0	0	0	0	1	12199	726	26	3		3	PLP1	23	103041586	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	697545	103041586	52228974	624	120432											
RBM41	55285	broad.mit.edu	37	chrX	106362106	106362106	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtattgtgatggagcatggGgctctgggaattgtagtagc	17	4	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106362106	C	C	106362106	1	2	134	0	1	0	0	0	0	0	0	0	13243	1247	43	4		4	RBM41	23	106362106	5'Flank	SNP	G	TCGA-49-4488-01A-01D-1753-08	3320520	106362106	48908454	625	120433											
COL4A5	1287	broad.mit.edu	37	chrX	107863702	107863702	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggattaaggaaattaaaActaatacgactctggtagat	8	4	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107863702	C	C	107863702	1	2	134	0	1	0	0	0	0	0	0	0	3726	58	2	5		5	COL4A5	23	107863702	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	1501596	107863702	47406858	626	120434											
LHFPL1	340596	broad.mit.edu	37	chrX	111914366	111914366	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccggcacctgtcaccactgTgcacatctgccaggccaggc	11	17	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111914366	A	A	111914366	3	1	134	1	0	0	0	0	1	0	0	0	8836	1696	59	5	421	5	LHFPL1	23	111914366	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	4050664	111914366	43356194	627	120435											
PLS3	5358	broad.mit.edu	37	chrX	114863589	114863589	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaggtatttgtgctcTgggtggaacttcagagttgt	14	4	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114863589	A	A	114863589	3	1	134	1	0	0	0	0	1	0	0	0	12203	1580	55	5	327	5	PLS3	23	114863589	Missense_Mutation	SNP	T	TCGA-49-4488-01A-01D-1753-08	2949223	114863589	40406971	628	120436											
DOCK11	139818	broad.mit.edu	37	chrX	117731274	117731274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagttgcccagcacctgaActcccacatacagatccctg	6	17	1	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117731274	T	T	117731274	1	4	134	0	1	0	0	0	0	0	0	0	4726	58	2	5		5	DOCK11	23	117731274	Intron	SNP	A	TCGA-49-4488-01A-01D-1753-08	2867685	117731274	37539286	629	120437											
KIAA1210	57481	broad.mit.edu	37	chrX	118219338	118219338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttttattggctaccccaGgtcctacctcatatttaggc	8	11	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118219338	T	T	118219338	1	4	134	0	1	0	0	0	0	0	0	0	8284	1015	35	2		2	KIAA1210	23	118219338	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	488064	118219338	37051222	630	120438											
CXorf56	63932	broad.mit.edu	37	chrX	118676546	118676546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgtctttggtccgtttGgtcatcatcacctggagtgg	11	11	4	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118676546	T	T	118676546	2	4	134	1	0	0	0	0	0	0	0	1	4145	1335	47	2		2	CXorf56	23	118676546	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	457208	118676546	36594014	631	120439											
FAM70A	55026	broad.mit.edu	37	chrX	119410885	119410885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgtattcgtagtacccaCcagtgatctccacccggctg	9	14	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119410885	A	A	119410885	3	1	134	1	0	0	0	0	1	0	0	0	5656	507	18	3	459	3	FAM70A	23	119410885	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	734339	119410885	35859675	632	120440											
ATP1B4	23439	broad.mit.edu	37	chrX	119512634	119512634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaactgactcacgtaagCtgtattccctttagtcattg	8	10	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119512634	A	A	119512634	1	1	134	0	1	0	0	0	0	0	0	0	1139	812	28	3		3	ATP1B4	23	119512634	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	101749	119512634	35757926	633	120441											
GRIA3	2892	broad.mit.edu	37	chrX	122528962	122528962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagggaattccctgaagcCaagaatgcaccactaaaggt	10	9	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122528962	A	A	122528962	2	1	134	1	0	0	0	0	0	0	0	1	6835	581	21	2		2	GRIA3	23	122528962	Silent	SNP	C	TCGA-49-4488-01A-01D-1753-08	3016328	122528962	32741598	634	120442											
ODZ1	10178	broad.mit.edu	37	chrX	123657421	123657421	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctcaggcaggaaaggGgatcggtcgaagattaagat	13	7	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123657421	A	A	123657421	2	1	134	1	0	0	0	0	0	0	0	1	10929	1219	43	4		4	ODZ1	23	123657421	Silent	SNP	G	TCGA-49-4488-01A-01D-1753-08	1128459	123657421	31613139	635	120443											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685987	125685987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctacggtgtcactcagcCaggcgacggcgaagatccag	14	13	2	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125685987	A	A	125685987	3	1	134	1	0	0	0	0	1	0	0	0	4297	595	21	2	790	2	DCAF12L1	23	125685987	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	2028566	125685987	29584573	636	120444											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686176	125686176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggccagcctggcctcaCtgtcccgcaagaggggaatg	14	14	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125686176	A	A	125686176	3	1	134	1	0	0	0	0	1	0	0	0	4297	565	20	3	979	3	DCAF12L1	23	125686176	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	189	125686176	29584384	637	120445											
SPANXC	64663	broad.mit.edu	37	chrX	140357951	140357951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagtacaagccccacagCccttctcctggagctctttg	10	14	2	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140357951	A	A	140357951	1	1	134	0	1	0	0	0	0	0	0	0	15103	754	26	3		3	SPANXC	23	140357951	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	14671775	140357951	14912609	638	120446											
MAGEC3	139081	broad.mit.edu	37	chrX	140966848	140966848	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgaaagactcagttgcacaGaggcaggaaggccaggcggt	16	8	1	3			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140966848	C	C	140966848	1	2	134	0	1	0	0	0	0	0	0	0	9274	957	33	4		4	MAGEC3	23	140966848	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	608897	140966848	14303712	639	120447											
MTMR1	8776	broad.mit.edu	37	chrX	149887229	149887230	+	Intron	INS	-	T	T													taaaatgaaatggcacttaaINStttgcaagtggaggtgatgt							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149887230	T	T	149887229	6	5	134	0	1	1	1	0	0	0	0	0	10032	116	4	0		0	MTMR1	23	149887229	Intron	INS	-	TCGA-49-4488-01A-01D-1753-08	8920381	149887229	5383331	640	120448											
MAGEA12	4111	broad.mit.edu	37	chrX	151896259	151896259	+	RNA	DEL	T	-	-													ggcccactccattcctcaggTttttttgaagcggcggtctt							TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151896259	-	-	151896259	6	5	134	0	1	1	0	1	0	0	0	0	9254	1740	60	0		0	MAGEA12	23	151896259	RNA	DEL	T	TCGA-49-4488-01A-01D-1753-08	2009030	151896259	3374301	641	120449											
HAUS7	55559	broad.mit.edu	37	chrX	152721026	152721026	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggaagtcagattctggtGcgtggcctggatgatggggc	18	6	2	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152721026	A	A	152721026	3	1	134	1	0	0	0	0	1	0	0	0	7037	1319	46	4	184	4	HAUS7	23	152721026	Missense_Mutation	SNP	G	TCGA-49-4488-01A-01D-1753-08	824767	152721026	2549534	642	120450											
SRPK3	26576	broad.mit.edu	37	chrX	153047496	153047496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagggcccagctggagCaggagaagggtacactgaag	16	10	0	2			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153047496	A	A	153047496	1	1	134	0	1	0	0	0	0	0	0	0	15279	725	25	3		3	SRPK3	23	153047496	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	326470	153047496	2223064	643	120451											
PDZD4	57595	broad.mit.edu	37	chrX	153068804	153068804	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggccgtgtacccgcccgggCagctcacacggtggtgactg	16	14	1	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153068804	G	G	153068804	1	3	134	0	1	0	0	0	0	0	0	0	11797	725	25	4		4	PDZD4	23	153068804	3'UTR	SNP	C	TCGA-49-4488-01A-01D-1753-08	21308	153068804	2201756	644	120452											
RENBP	5973	broad.mit.edu	37	chrX	153208946	153208946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgggaatgcatcaggtggCcatggcagggtcgcagggtg	19	7	1	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153208946	A	A	153208946	1	1	134	0	1	0	0	0	0	0	0	0	13333	754	26	3		3	RENBP	23	153208946	Intron	SNP	C	TCGA-49-4488-01A-01D-1753-08	140142	153208946	2061614	645	120453											
FLNA	2316	broad.mit.edu	37	chrX	153590914	153590914	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggcggggcctaccactcCaggggcacacttgatgccga	13	14	0	1			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153590914	T	T	153590914	3	4	134	1	0	0	0	0	1	0	0	0	5991	603	21	4	5634	4	FLNA	23	153590914	Missense_Mutation	SNP	C	TCGA-49-4488-01A-01D-1753-08	381968	153590914	1679646	646	120454											
LAGE3	8270	broad.mit.edu	37	chrX	153707056	153707056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaagcagcccccagctcGgaaaggatacaatatgtgcg	11	13	0	0			TCGA-49-4488-01A-01D-1753-08	TCGA-49-4488-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153707056	T	T	153707056	1	4	134	0	1	0	0	0	0	0	0	0	8673	1131	39	1		1	LAGE3	23	153707056	Intron	SNP	G	TCGA-49-4488-01A-01D-1753-08	116142	153707056	1563504	647	120455											
PRDM2	7799	broad.mit.edu	37	chr1	14107311	14107311	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgcatctccacacccatgCccctctccactctcaaatgc	4	19	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14107311	T	T	14107311	2	4	135	1	0	0	0	0	0	0	0	1	12564	747	26	4		4	PRDM2	1	14107311	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08		14107311	235143310	1	120456											
UBR4	23352	broad.mit.edu	37	chr1	19481946	19481946	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctctaaccttcaggtcctCatgattgatttccaacacat	5	12	3	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19481946	T	T	19481946	3	4	135	1	0	0	0	0	1	0	0	0	17030	835	29	4	9518	4	UBR4	1	19481946	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	5374635	19481946	229768675	2	120457											
UBR4	23352	broad.mit.edu	37	chr1	19505668	19505668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaatgtacaagggccaaGggccctcagaaaaaggagcc	14	9	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19505668	T	T	19505668	3	4	135	1	0	0	0	0	1	0	0	0	17030	1000	35	2	13676	2	UBR4	1	19505668	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	23722	19505668	229744953	3	120458											
UBR4	23352	broad.mit.edu	37	chr1	19524565	19524565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaagaaacataaggcctGtcaagatactattatctctt	6	7	2	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19524565	T	T	19524565	1	4	135	0	1	0	0	0	0	0	0	0	17030	1392	48	3		3	UBR4	1	19524565	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	18897	19524565	229726056	4	120459											
PLA2G2D	26279	broad.mit.edu	37	chr1	20442055	20442055	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatagtccttgtagatgctGcacccctgggtcttcaggtg	11	10	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20442055	A	A	20442055	2	1	135	1	0	0	0	0	0	0	0	1	12092	1311	46	4		4	PLA2G2D	1	20442055	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08	917490	20442055	228808566	5	120460											
LYPLA2	11313	broad.mit.edu	37	chr1	24120342	24120342	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatagctgccagtgcctctaCtcccaaggtttgacctgatg	9	12	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24120342	T	T	24120342	1	4	135	0	1	0	0	0	0	0	0	0	9205	580	20	4		4	LYPLA2	1	24120342	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	3678287	24120342	225130279	6	120461											
PHACTR4	65979	broad.mit.edu	37	chr1	28817389	28817389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaagaaatatctgtaatGtaattactaaaacgtttgat	5	3	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28817389	T	T	28817389	1	4	135	0	1	0	0	0	0	0	0	0	11907	1392	48	3		3	PHACTR4	1	28817389	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	4697047	28817389	220433232	7	120462											
MTF1	4520	broad.mit.edu	37	chr1	38288038	38288038	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgccactgccgctgctgAtgcagaagccccagcaacaa	10	14	0	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38288038	G	G	38288038	3	3	135	1	0	0	0	0	1	0	0	0	10016	333	12	5	751	5	MTF1	1	38288038	Missense_Mutation	SNP	A	TCGA-49-4490-01A-21D-1855-08	9470649	38288038	210962583	8	120463											
ST3GAL3	6487	broad.mit.edu	37	chr1	44317244	44317244	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaactgcccagctggcgaAattctccgaggtaatcagct	9	12	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44317244	G	G	44317244	1	3	135	0	1	0	0	0	0	0	0	0	15334	29	1	5		5	ST3GAL3	1	44317244	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	6029206	44317244	204933377	9	120464											
C1orf163	65260	broad.mit.edu	37	chr1	53163965	53163965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaaaaggacttgacctGctcctcatcctggaagtcca	7	14	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53163965	T	T	53163965	3	4	135	1	0	0	0	0	1	0	0	0	2031	1328	46	3	673	3	C1orf163	1	53163965	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	8846721	53163965	196086656	10	120465											
CLCA2	9635	broad.mit.edu	37	chr1	86909605	86909605	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctgagattatattatttGatcctgatggacgaaaatac	7	7	0	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86909605	A	A	86909605	3	1	135	1	0	0	0	0	1	0	0	0	3489	1290	45	4	1662	4	CLCA2	1	86909605	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	33745640	86909605	162341016	11	120466											
MAN1A2	10905	broad.mit.edu	37	chr1	118057457	118057457	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcttttatcttgtctgcaActggatcttgaagttagcct	7	8	4	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118057457	G	G	118057457	1	3	135	0	1	0	0	0	0	0	0	0	9303	58	2	5		5	MAN1A2	1	118057457	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	31147852	118057457	131193164	12	120467											
WARS2	10352	broad.mit.edu	37	chr1	119575489	119575489	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgccgttatcagaatgcaTggagtgcaaggcacaaaagc	12	9	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119575489	C	C	119575489	1	2	135	0	1	0	0	0	0	0	0	0	17377	1479	51	5		5	WARS2	1	119575489	3'UTR	SNP	T	TCGA-49-4490-01A-21D-1855-08	1518032	119575489	129675132	13	120468											
LINGO4	339398	broad.mit.edu	37	chr1	151773644	151773644	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcacggtgatgttggggtCagaaagtgtgccgtttggtg	18	5	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151773644	T	T	151773644	3	4	135	1	0	0	0	0	1	0	0	0	8890	826	29	4	248	4	LINGO4	1	151773644	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	32198155	151773644	97476977	14	120469											
CRNN	49860	broad.mit.edu	37	chr1	152382681	152382682	+	Frame_Shift_Del	DEL	TC	-	-													ggtgggtgtctgggtgtgtgTccctgcctgtatctgagcat							TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152382682	-	-	152382681	7	5	135	1	0	1	0	1	0	0	0	0	3924	1667	58	0	614	0	CRNN	1	152382681	Frame_Shift_Del	DEL	TC	TCGA-49-4490-01A-21D-1855-08	609037	152382681	96867940	15	120470											
INTS3	65123	broad.mit.edu	37	chr1	153737607	153737607	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagcctctcttccacacgctGactccccaaccctggactgt	7	18	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153737607	A	A	153737607	1	1	135	0	1	0	0	0	0	0	0	0	7849	1305	45	4		4	INTS3	1	153737607	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	1354926	153737607	95513014	16	120471											
THBS3	7059	broad.mit.edu	37	chr1	155167781	155167781	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatccctcccaggccccccGtcccagtagccctgtctgat	7	20	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155167781	A	A	155167781	1	1	135	0	1	0	0	0	0	0	0	0	15978	1160	40	4		4	THBS3	1	155167781	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	1430174	155167781	94082840	17	120472											
OR10J3	441911	broad.mit.edu	37	chr1	159284480	159284480	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaggtttgaaagagctgggCagaggaaagaaacatatgat	13	4	0	5			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159284480	G	G	159284480	1	3	135	0	1	0	0	0	0	0	0	0	11005	725	25	4		4	OR10J3	1	159284480	5'Flank	SNP	C	TCGA-49-4490-01A-21D-1855-08	4116699	159284480	89966141	18	120473											
PAPPA2	60676	broad.mit.edu	37	chr1	176758977	176758977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatacaatgcctggaaggtgGaatctgggagcaaggcagct	15	7	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176758977	T	T	176758977	3	4	135	1	0	0	0	0	1	0	0	0	11527	1174	41	3	4867	3	PAPPA2	1	176758977	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	17474497	176758977	72491644	19	120474											
CNTN2	6900	broad.mit.edu	37	chr1	205033386	205033386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtggcttcaaagggcacGccaagtaacgtcttaatcaa	11	10	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205033386	T	T	205033386	1	4	135	0	1	0	0	0	0	0	0	0	3673	1102	38	3		3	CNTN2	1	205033386	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	28274409	205033386	44217235	20	120475											
MARK1	4139	broad.mit.edu	37	chr1	220808734	220808734	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atagtttgaaggtggtgaatCgttatccagtggaaacttgt	12	4	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220808734	G	G	220808734	3	3	135	1	0	0	0	0	1	0	0	0	9404	893	31	4	1185	4	MARK1	1	220808734	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	15775348	220808734	28441887	21	120476											
NT5C1B	93034	broad.mit.edu	37	chr2	18770679	18770679	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcttcagccccatggcaaGattctaagacactcggttca	7	12	4	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18770679	C	C	18770679	1	2	135	0	1	0	0	0	0	0	0	0	10781	957	33	4		4	NT5C1B	2	18770679	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08		18770679	224428694	22	120477											
CEBPZ	10153	broad.mit.edu	37	chr2	37439253	37439253	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtgttttgctgactactaGggcagtaggctattaaatga	11	5	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37439253	C	C	37439253	1	2	135	0	1	0	0	0	0	0	0	0	3234	1015	35	4		4	CEBPZ	2	37439253	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	18668574	37439253	205760120	23	120478											
CCT4	10575	broad.mit.edu	37	chr2	62104037	62104037	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaacacagagaaccaatttCatttggattctacttacgtc	5	9	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62104037	G	G	62104037	1	3	135	0	1	0	0	0	0	0	0	0	2985	841	29	4		4	CCT4	2	62104037	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	24664784	62104037	181095336	24	120479											
CD207	50489	broad.mit.edu	37	chr2	71060878	71060878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatcactttttaactctGggatttgggcatttaaggta	8	7	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71060878	T	T	71060878	3	4	135	1	0	0	0	0	1	0	0	0	3013	1348	47	2	538	2	CD207	2	71060878	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	8956841	71060878	172138495	25	120480											
CCDC93	54520	broad.mit.edu	37	chr2	118703137	118703137	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaggtcaaggtaccagGcggctctccactggagaggg	16	10	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118703137	A	A	118703137	3	1	135	1	0	0	0	0	1	0	0	0	2900	1203	42	4	609	4	CCDC93	2	118703137	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	47642259	118703137	124496236	26	120481											
UGGT1	56886	broad.mit.edu	37	chr2	128865502	128865502	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attactttggttaatgttctTccttgacaggtaccgattat	7	7	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128865502	G	G	128865502	1	3	135	0	1	0	0	0	0	0	0	0	17067	1798	62	5		5	UGGT1	2	128865502	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	10162365	128865502	114333871	27	120482											
PLEKHB2	55041	broad.mit.edu	37	chr2	131951058	131951058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaaattgagggtgggcgCctgagaggggtgtttctgtt	16	6	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131951058	A	A	131951058	1	1	135	0	1	0	0	0	0	0	0	0	12160	754	26	3		3	PLEKHB2	2	131951058	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	3085556	131951058	111248315	28	120483											
ZRANB3	84083	broad.mit.edu	37	chr2	136269162	136269162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgatttgcaacagaccCctcaggagcaagtacgaaca	9	11	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136269162	A	A	136269162	1	1	135	0	1	0	0	0	0	0	0	0	18353	638	22	2		2	ZRANB3	2	136269162	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	4318104	136269162	106930211	29	120484											
HOXD4	3233	broad.mit.edu	37	chr2	177015179	177015179	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagaccaaagtgcgacatgGagactagaagcagccggcgc	14	10	0	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177015179	A	A	177015179	1	1	135	0	1	0	0	0	0	0	0	0	7391	1189	41	4		4	HOXD4	2	177015179	5'Flank	SNP	G	TCGA-49-4490-01A-21D-1855-08	40746017	177015179	66184194	30	120485											
TTN	7273	broad.mit.edu	37	chr2	179650412	179650412	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgagggctagctgtgcGggggcgtttatccacatgga	16	7	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179650412	A	A	179650412	3	1	135	1	0	0	0	0	1	0	0	0	16861	1116	39	4	108952	4	TTN	2	179650412	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	2635233	179650412	63548961	31	120486											
KLF7	8609	broad.mit.edu	37	chr2	207945748	207945748	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatatagttgagtgcatgAcagtgtgtatgtgtgtgggt	14	2	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207945748	G	G	207945748	1	3	135	0	1	0	0	0	0	0	0	0	8422	290	10	5		5	KLF7	2	207945748	3'UTR	SNP	A	TCGA-49-4490-01A-21D-1855-08	28295336	207945748	35253625	32	120487											
CPS1	1373	broad.mit.edu	37	chr2	211444463	211444463	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaatttatggagtggacaCaagaatgctgactaaaataa	9	5	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211444463	T	T	211444463	3	4	135	1	0	0	0	0	1	0	0	0	3855	478	17	4	537	4	CPS1	2	211444463	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	3498715	211444463	31754910	33	120488											
IGFBP5	3488	broad.mit.edu	37	chr2	217542955	217542955	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtctgcggcaggggccCtgtgtggacaggagggtgag	20	7	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217542955	A	A	217542955	5	1	135	1	0	0	0	0	0	0	1	0	7652	695	24	2	259	2	IGFBP5	2	217542955	Splice_Site	SNP	C	TCGA-49-4490-01A-21D-1855-08	6098492	217542955	25656418	34	120489											
ARPC2	10109	broad.mit.edu	37	chr2	219103426	219103426	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatgaccttgaaaatcttcCggcatccaaggattccattg	7	10	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219103426	T	T	219103426	3	4	135	1	0	0	0	0	1	0	0	0	975	652	23	4	326	4	ARPC2	2	219103426	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	1560471	219103426	24095947	35	120490											
SPHKAP	80309	broad.mit.edu	37	chr2	228881884	228881884	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctgtggcacactggggatCgcagagaaggagacagcagg	17	8	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228881884	T	T	228881884	3	4	135	1	0	0	0	0	1	0	0	0	15166	884	31	4	1440	4	SPHKAP	2	228881884	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	9778458	228881884	14317489	36	120491											
OGG1	4968	broad.mit.edu	37	chr3	9801161	9801161	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgggaccagaactagggaTatggactcaccttccacttg	11	11	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9801161	A	A	9801161	1	1	135	0	1	0	0	0	0	0	0	0	10940	1421	49	5		5	OGG1	3	9801161	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08		9801161	188221269	37	120492											
RBM5	10181	broad.mit.edu	37	chr3	50153045	50153045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagaccttcacaaggtggCcatgcttctgagctgatctg	10	12	4	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50153045	T	T	50153045	1	4	135	0	1	0	0	0	0	0	0	0	13251	754	26	4		4	RBM5	3	50153045	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	40351884	50153045	147869385	38	120493											
RAD54L2	23132	broad.mit.edu	37	chr3	51697441	51697441	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcactgggaaatagctagGgagcccctccccacctcact	10	15	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51697441	A	A	51697441	1	1	135	0	1	0	0	0	0	0	0	0	13102	1247	43	4		4	RAD54L2	3	51697441	3'UTR	SNP	G	TCGA-49-4490-01A-21D-1855-08	1544396	51697441	146324989	39	120494											
PARP3	10039	broad.mit.edu	37	chr3	51978890	51978890	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcactaacatcttcagcaagGagatgttcaagaacaccatg	7	10	4	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51978890	C	C	51978890	3	2	135	1	0	0	0	0	1	0	0	0	11556	1175	41	4	637	4	PARP3	3	51978890	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	281449	51978890	146043540	40	120495											
SEMA5B	54437	broad.mit.edu	37	chr3	122632683	122632683	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccggttagtctgggacctcaGagcaagcctgttctccctca	10	14	4	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122632683	C	C	122632683	1	2	135	0	1	0	0	0	0	0	0	0	14151	957	33	4		4	SEMA5B	3	122632683	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	70653793	122632683	75389747	41	120496											
CEP70	80321	broad.mit.edu	37	chr3	138248225	138248225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtccccataccattaaaaGgcctttataagttggtgagg	9	9	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138248225	T	T	138248225	3	4	135	1	0	0	0	0	1	0	0	0	3289	1000	35	2	1061	2	CEP70	3	138248225	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	15615542	138248225	59774205	42	120497											
PLD1	5337	broad.mit.edu	37	chr3	171404516	171404516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctcagactcactggacGggtgaaagagtttgaagtgg	14	7	2	4			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171404516	T	T	171404516	3	4	135	1	0	0	0	0	1	0	0	0	12140	1116	39	1	1446	1	PLD1	3	171404516	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	33156291	171404516	26617914	43	120498											
FNDC3B	64778	broad.mit.edu	37	chr3	172050827	172050827	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctgtattcaaaggtattTaatgcccagaattttttata	5	6	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172050827	C	C	172050827	1	2	135	0	1	0	0	0	0	0	0	0	6028	1769	61	5		5	FNDC3B	3	172050827	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	646311	172050827	25971603	44	120499											
TNFSF10	8743	broad.mit.edu	37	chr3	172224321	172224321	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaaaactggcttcatgGtccatgtctatcaagtgctc	7	11	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172224321	A	A	172224321	2	1	135	1	0	0	0	0	0	0	0	1	16424	1252	44	4		4	TNFSF10	3	172224321	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08	173494	172224321	25798109	45	120500											
LRCH3	84859	broad.mit.edu	37	chr3	197554194	197554194	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcatcaggtaaaccatAgtggaagcatcaggtaaacc	11	8	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197554194	G	G	197554194	1	3	135	0	1	0	0	0	0	0	0	0	9021	435	15	5		5	LRCH3	3	197554194	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	25329873	197554194	468236	46	120501											
PRKG2	5593	broad.mit.edu	37	chr4	82064125	82064126	+	Intron	DEL	AC	-	-													tacaagagaagtgaaactttAcacacacacacccataatta							TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82064126	-	-	82064125	6	5	135	0	1	1	0	1	0	0	0	0	12629	406	14	0		0	PRKG2	4	82064125	Intron	DEL	AC	TCGA-49-4490-01A-21D-1855-08		82064125	109090151	47	120502											
WDFY3	23001	broad.mit.edu	37	chr4	85701219	85701219	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaaagcagagtattttAggtgccaggtgaagtgaagg	13	3	0	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85701219	G	G	85701219	1	3	135	0	1	0	0	0	0	0	0	0	17397	435	15	5		5	WDFY3	4	85701219	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	3637094	85701219	105453057	48	120503											
FAT4	79633	broad.mit.edu	37	chr4	126389827	126389827	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactatgacaaccagacaggCgaccgggctgagtttttggc	12	10	0	3	rs144476127	byFrequency	TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126389827	T	T	126389827	2	4	135	1	0	0	0	0	0	0	0	1	5749	755	27	4		4	FAT4	4	126389827	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	40688608	126389827	64764449	49	120504											
CDH12	1010	broad.mit.edu	37	chr5	21765050	21765050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaacatgcatatggtggGtctttatacactcaaggaac	8	7	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21765050	T	T	21765050	1	4	135	0	1	0	0	0	0	0	0	0	3128	1276	44	3		3	CDH12	5	21765050	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08		21765050	159150210	50	120505											
PRDM9	56979	broad.mit.edu	37	chr5	23522507	23522507	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgagccgcaggatgatgaTtacctctgtaagtgacactt	11	9	1	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23522507	C	C	23522507	2	2	135	1	0	0	0	0	0	0	0	1	12569	1490	52	5		5	PRDM9	5	23522507	Silent	SNP	T	TCGA-49-4490-01A-21D-1855-08	1757457	23522507	157392753	51	120506											
PDZD2	23037	broad.mit.edu	37	chr5	32089581	32089581	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctgtcctctctgaaccCgacagaggttgcccaaccac	9	15	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32089581	A	A	32089581	2	1	135	1	0	0	0	0	0	0	0	1	11795	639	23	1		1	PDZD2	5	32089581	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	8567074	32089581	148825679	52	120507											
EGFLAM	133584	broad.mit.edu	37	chr5	38462952	38462952	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattgaaatgaatgaatgaTtgaatgaactccaaaaatgc	8	4	0	6			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38462952	A	A	38462952	1	1	135	0	1	0	0	0	0	0	0	0	5006	1508	52	5		5	EGFLAM	5	38462952	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	6373371	38462952	142452308	53	120508											
SPZ1	84654	broad.mit.edu	37	chr5	79617072	79617072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactccatcatcagaaacaGggaactctgcaagagaagcc	9	11	3	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79617072	T	T	79617072	3	4	135	1	0	0	0	0	1	0	0	0	15245	991	35	2	1040	2	SPZ1	5	79617072	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	41154120	79617072	101298188	54	120509											
CLINT1	9685	broad.mit.edu	37	chr5	157218721	157218721	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacaacttacctgtgatcttGacataggcaaaccaagtccc	7	12	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157218721	A	A	157218721	3	1	135	1	0	0	0	0	1	0	0	0	3563	1294	45	4	519	4	CLINT1	5	157218721	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	77601649	157218721	23696539	55	120510											
GABRA6	2559	broad.mit.edu	37	chr5	161117220	161117220	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaggtgaatacgttatAatgacagtttacttccactt	6	9	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161117220	T	T	161117220	2	4	135	1	0	0	0	0	0	0	0	1	6225	352	13	5		5	GABRA6	5	161117220	Silent	SNP	A	TCGA-49-4490-01A-21D-1855-08	3898499	161117220	19798040	56	120511											
RPL26L1	51121	broad.mit.edu	37	chr5	172395341	172395341	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtagctaatttttgactgCcaggattaagctgcttttga	9	6	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172395341	T	T	172395341	1	4	135	0	1	0	0	0	0	0	0	0	13685	754	26	4		4	RPL26L1	5	172395341	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	11278121	172395341	8519919	57	120512											
GRM6	2916	broad.mit.edu	37	chr5	178408745	178408745	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctttcgcttctgcacattCtgctctggatggaagaggat	11	10	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178408745	T	T	178408745	2	4	135	1	0	0	0	0	0	0	0	1	6867	912	32	4		4	GRM6	5	178408745	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	6013404	178408745	2506515	58	120513											
PRSS16	10279	broad.mit.edu	37	chr6	27218940	27218940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggacggggaggggtccCagcgggcggagtcccttgac	20	11	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27218940	A	A	27218940	1	1	135	0	1	0	0	0	0	0	0	0	12722	609	21	2		2	PRSS16	6	27218940	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08		27218940	143896127	59	120514											
TRIM39	56658	broad.mit.edu	37	chr6	30309601	30309601	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctccctgacacaccaagGcgtttcaccttctacccttg	6	16	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30309601	A	A	30309601	2	1	135	1	0	0	0	0	0	0	0	1	16637	1194	42	4		4	TRIM39	6	30309601	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08	3090661	30309601	140805466	60	120515											
HLA-DRA	3122	broad.mit.edu	37	chr6	32411157	32411157	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttttccgcaagttccactAtctccccttcctgccctcaa	3	19	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32411157	G	G	32411157	3	3	135	1	0	0	0	0	1	0	0	0	7274	449	16	5	534	5	HLA-DRA	6	32411157	Missense_Mutation	SNP	A	TCGA-49-4490-01A-21D-1855-08	2101556	32411157	138703910	61	120516											
SYNGAP1	8831	broad.mit.edu	37	chr6	33406039	33406039	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggttgccagtgcactagttCacatcctgcagagtacaggc	11	11	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33406039	T	T	33406039	3	4	135	1	0	0	0	0	1	0	0	0	15566	826	29	4	1387	4	SYNGAP1	6	33406039	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	994882	33406039	137709028	62	120517											
TFAP2B	7021	broad.mit.edu	37	chr6	50791272	50791272	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccctaccagccgctcccCtaccaccagagccaggaccc	6	24	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50791272	A	A	50791272	2	1	135	1	0	0	0	0	0	0	0	1	15911	668	24	2		2	TFAP2B	6	50791272	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	17385233	50791272	120323795	63	120518											
COL12A1	1303	broad.mit.edu	37	chr6	75801215	75801215	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatacataccctatcaccTttttctcctttcaacccaga	1	14	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75801215	C	C	75801215	2	2	135	1	0	0	0	0	0	0	0	1	3701	1606	56	5		5	COL12A1	6	75801215	Silent	SNP	T	TCGA-49-4490-01A-21D-1855-08	25009943	75801215	95313852	64	120519											
GRIK2	2898	broad.mit.edu	37	chr6	102074244	102074244	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattattgacagacctttatCtcctcttcagcctgtgatca	5	12	4	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102074244	A	A	102074244	1	1	135	0	1	0	0	0	0	0	0	0	6840	928	32	3		3	GRIK2	6	102074244	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	26273029	102074244	69040823	65	120520											
HEY2	23493	broad.mit.edu	37	chr6	126080673	126080673	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccatccacgggcagcgtcGccccctgcgtgccacctctc	10	20	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126080673	A	A	126080673	3	1	135	1	0	0	0	0	1	0	0	0	7146	1087	38	4	757	4	HEY2	6	126080673	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	24006429	126080673	45034394	66	120521											
ALDH8A1	64577	broad.mit.edu	37	chr6	135239586	135239586	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgatggttttgatctcagtGaagaagtcgtaagagtcctt	12	5	1	5			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135239586	A	A	135239586	2	1	135	1	0	0	0	0	0	0	0	1	505	1281	45	4		4	ALDH8A1	6	135239586	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08	9158913	135239586	35875481	67	120522											
SASH1	23328	broad.mit.edu	37	chr6	148869469	148869469	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggaaatctgccgaaagccCgtctctcctgggtgcatttc	10	13	2	0	rs111485793	byFrequency	TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148869469	T	T	148869469	2	4	135	1	0	0	0	0	0	0	0	1	13960	639	23	4		4	SASH1	6	148869469	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	13629883	148869469	22245598	68	120523											
LPA	4018	broad.mit.edu	37	chr6	160978538	160978538	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcccacctcacacacggaTcggttgtgtaacaccagggt	9	14	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160978538	G	G	160978538	3	3	135	1	0	0	0	0	1	0	0	0	8990	1435	50	5	1469	5	LPA	6	160978538	Missense_Mutation	SNP	T	TCGA-49-4490-01A-21D-1855-08	12109069	160978538	10136529	69	120524											
CARD11	84433	broad.mit.edu	37	chr7	2985559	2985559	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaccacatagcccctttgCcccttggtatgtagaatgtc	8	12	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2985559	T	T	2985559	2	4	135	1	0	0	0	0	0	0	0	1	2671	726	26	4		4	CARD11	7	2985559	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08		2985559	156153104	70	120525											
SCIN	85477	broad.mit.edu	37	chr7	12692224	12692224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttttagccaaaatgtacCttgagacagacccttctgga	7	9	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12692224	T	T	12692224	3	4	135	1	0	0	0	0	1	0	0	0	14018	681	24	4	2094	4	SCIN	7	12692224	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	9706665	12692224	146446439	71	120526											
PLEKHA8	84725	broad.mit.edu	37	chr7	30092277	30092277	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaaaaaaaaaaaaaaaGaccaaataacgaccttctgg	4	6	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30092277	A	A	30092277	1	1	135	0	1	0	0	0	0	0	0	0	12157	957	33	4		4	PLEKHA8	7	30092277	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	17400053	30092277	129046386	72	120527											
VPS41	27072	broad.mit.edu	37	chr7	38791720	38791720	+	Intron	DEL	C	-	-													gaagaaagacaaacaacttaCcatcaatgacaacctcttca							TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38791720	-	-	38791720	6	5	135	0	1	1	0	1	0	0	0	0	17337	522	18	0		0	VPS41	7	38791720	Intron	DEL	C	TCGA-49-4490-01A-21D-1855-08	8699443	38791720	120346943	73	120528											
PKD1L1	168507	broad.mit.edu	37	chr7	47835714	47835714	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttactttgaaaagattttCttttttggggtaaagtcatg	8	3	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47835714	G	G	47835714	3	3	135	1	0	0	0	0	1	0	0	0	12059	913	32	4	333	4	PKD1L1	7	47835714	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	9043994	47835714	111302949	74	120529											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	135	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-49-4490-01A-21D-1855-08	7423801	55259515	103879148	75	120530											
ZNF479	90827	broad.mit.edu	37	chr7	57194441	57194441	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccctggaaaacaaacaaAcaaaaccactcatgaacaca	4	12	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57194441	G	G	57194441	1	3	135	0	1	0	0	0	0	0	0	0	18060	58	2	5		5	ZNF479	7	57194441	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	1934926	57194441	101944222	76	120531											
EIF4H	7458	broad.mit.edu	37	chr7	73609248	73609248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagggcatcttgtcctgaTgggatgatcatggccggttc	15	8	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73609248	C	C	73609248	1	2	135	0	1	0	0	0	0	0	0	0	5081	1479	51	5		5	EIF4H	7	73609248	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	16414807	73609248	85529415	77	120532											
MAGI2	9863	broad.mit.edu	37	chr7	78119040	78119040	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacacaaacattctcaaaGcacattgctgaaacaccata	4	11	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78119040	A	A	78119040	1	1	135	0	1	0	0	0	0	0	0	0	9283	986	34	4		4	MAGI2	7	78119040	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	4509792	78119040	81019623	78	120533											
LHFPL3	375612	broad.mit.edu	37	chr7	103969533	103969533	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttctccacgctgccctcGggcgccttcaaagccgcctc	9	19	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103969533	T	T	103969533	2	4	135	1	0	0	0	0	0	0	0	1	8838	1103	39	1		1	LHFPL3	7	103969533	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08	25850493	103969533	55169130	79	120534											
PLXNA4	91584	broad.mit.edu	37	chr7	131866933	131866933	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgggtcccccatacggCgatgggtgtgtttccactga	14	11	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131866933	T	T	131866933	3	4	135	1	0	0	0	0	1	0	0	0	12217	768	27	4	2573	4	PLXNA4	7	131866933	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	27897400	131866933	27271730	80	120535											
NDUFB2	4708	broad.mit.edu	37	chr7	140402790	140402790	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattctctggcgcttttggCatgactcagaagaggtgctg	14	8	2	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140402790	T	T	140402790	3	4	135	1	0	0	0	0	1	0	0	0	10376	710	25	4	229	4	NDUFB2	7	140402790	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	8535857	140402790	18735873	81	120536											
WDR60	55112	broad.mit.edu	37	chr7	158679644	158679644	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagctttcactgatatggAaaatgttttattttttaaaa	6	3	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158679644	G	G	158679644	1	3	135	0	1	0	0	0	0	0	0	0	17438	261	9	5		5	WDR60	7	158679644	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	18276854	158679644	459019	82	120537											
SLC7A2	6542	broad.mit.edu	37	chr8	17412165	17412165	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcaaatcaattccaaaacGaagacaccaataattgctac	4	11	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17412165	A	A	17412165	2	1	135	1	0	0	0	0	0	0	0	1	14811	1045	37	4		4	SLC7A2	8	17412165	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08		17412165	128951857	83	120538											
ERLIN2	11160	broad.mit.edu	37	chr8	37607164	37607164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcaagtaagcattgctgCatgggagcagcccctctctc	9	13	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37607164	T	T	37607164	1	4	135	0	1	0	0	0	0	0	0	0	5275	725	25	4		4	ERLIN2	8	37607164	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	20194999	37607164	108756858	84	120539											
RP1	6101	broad.mit.edu	37	chr8	55534023	55534023	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaatggcgacccgaagaCgaggcgtgcggttcttctga	15	10	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55534023	T	T	55534023	3	4	135	1	0	0	0	0	1	0	0	0	13643	536	19	4	499	4	RP1	8	55534023	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	17926859	55534023	90829999	85	120540											
SGK3	23678	broad.mit.edu	37	chr8	67734616	67734616	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgtttttagtccagatgtCagagcattccttcaaatgga	8	7	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67734616	T	T	67734616	2	4	135	1	0	0	0	0	0	0	0	1	14325	813	29	4		4	SGK3	8	67734616	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	12200593	67734616	78629406	86	120541											
LRP12	29967	broad.mit.edu	37	chr8	105544285	105544285	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagaaacaactacatagagTtccttttaatacagagaagc	7	7	0	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105544285	A	A	105544285	1	1	135	0	1	0	0	0	0	0	0	0	9041	1740	60	5		5	LRP12	8	105544285	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	37809669	105544285	40819737	87	120542											
OXR1	55074	broad.mit.edu	37	chr8	107709543	107709543	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaacccctcaccctgacaGaagggagcttaagagctctg	10	13	2	4			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107709543	T	T	107709543	1	4	135	0	1	0	0	0	0	0	0	0	11428	957	33	3		3	OXR1	8	107709543	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	2165258	107709543	38654479	88	120543											
SAMD12	401474	broad.mit.edu	37	chr8	119391896	119391896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttctcctgggcaatcccCattcgctcgagctttttgtc	9	13	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119391896	T	T	119391896	3	4	135	1	0	0	0	0	1	0	0	0	13928	594	21	4	270	4	SAMD12	8	119391896	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	11682353	119391896	26972126	89	120544											
ANXA13	312	broad.mit.edu	37	chr8	124693518	124693518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcagtttccggaagtcccCggaggtatctgagcgaacca	12	11	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124693518	A	A	124693518	3	1	135	1	0	0	0	0	1	0	0	0	717	652	23	1	41	1	ANXA13	8	124693518	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	5301622	124693518	21670504	90	120545											
PTK2	5747	broad.mit.edu	37	chr8	141716268	141716268	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggctgggataaaatccttCgctggacctcggactgggat	14	9	0	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141716268	A	A	141716268	4	1	135	1	0	0	0	0	0	1	0	0	12868	893	31	3	1015	3	PTK2	8	141716268	Nonsense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	17022750	141716268	4647754	91	120546											
EPPK1	83481	broad.mit.edu	37	chr8	144944327	144944327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggcagcttgctcccaaGggatgagacctttcttcatg	13	11	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144944327	T	T	144944327	3	4	135	1	0	0	0	0	1	0	0	0	5232	1000	35	2	4171	2	EPPK1	8	144944327	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	3228059	144944327	1419695	92	120547											
FAM75A6	389730	broad.mit.edu	37	chr9	43629307	43629307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctctgggcctccgcctcCgccctactggacactgggag	12	17	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43629307	A	A	43629307	3	1	135	1	0	0	0	0	1	0	0	0	5674	652	23	1	3840	1	FAM75A6	9	43629307	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08		43629307	97584124	93	120548											
PTCH1	5727	broad.mit.edu	37	chr9	98278893	98278893	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctcccagtcttccctcgTctcccccttgccttgtcgct	5	20	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98278893	C	C	98278893	1	2	135	0	1	0	0	0	0	0	0	0	12836	1682	58	5		5	PTCH1	9	98278893	5'UTR	SNP	T	TCGA-49-4490-01A-21D-1855-08	54649586	98278893	42934538	94	120549											
TLR4	7099	broad.mit.edu	37	chr9	120471038	120471038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttttacatactgcacaaGgtgaggtgttcattgtcctg	9	9	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120471038	T	T	120471038	1	4	135	0	1	0	0	0	0	0	0	0	16076	1015	35	2		2	TLR4	9	120471038	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	22192145	120471038	20742393	95	120550											
ENG	2022	broad.mit.edu	37	chr9	130581017	130581017	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacaaagctctgctgccccGgctcgatggtgttggaggcc	14	13	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130581017	A	A	130581017	3	1	135	1	0	0	0	0	1	0	0	0	5159	1116	39	4	616	4	ENG	9	130581017	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	10109979	130581017	10632414	96	120551											
FAM73B	84895	broad.mit.edu	37	chr9	131830658	131830658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacttgctcacatcagccCgtgtggttgcctggctccgt	10	15	2	0	rs141810232	by1000genomes	TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131830658	A	A	131830658	1	1	135	0	1	0	0	0	0	0	0	0	5669	667	23	1		1	FAM73B	9	131830658	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	1249641	131830658	9382773	97	120552											
AKR1E2	83592	broad.mit.edu	37	chr10	4881968	4881968	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaatctgatcagtttttgCcaatccagagatgtgtccgt	9	8	2	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4881968	T	T	4881968	2	4	135	1	0	0	0	0	0	0	0	1	474	747	26	4		4	AKR1E2	10	4881968	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08		4881968	130652779	98	120553											
DYDC2	84332	broad.mit.edu	37	chr10	82122910	82122910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacaagtcagcccagtccCaatccaaggcacattaaggg	9	14	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82122910	A	A	82122910	1	1	135	0	1	0	0	0	0	0	0	0	4879	609	21	2		2	DYDC2	10	82122910	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	77240942	82122910	53411837	99	120554											
ATRNL1	26033	broad.mit.edu	37	chr10	117486774	117486774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcaactgcttcgagaacGacagcagatggccagccgtc	11	14	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117486774	T	T	117486774	3	4	135	1	0	0	0	0	1	0	0	0	1211	1058	37	3	3918	3	ATRNL1	10	117486774	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	35363864	117486774	18047973	100	120555											
HSPA12A	259217	broad.mit.edu	37	chr10	118460544	118460544	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatggtaaaagtccctggcGgcatacccgaagctgtggaa	12	10	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118460544	A	A	118460544	2	1	135	1	0	0	0	0	0	0	0	1	7473	1103	39	4		4	HSPA12A	10	118460544	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08	973770	118460544	17074203	101	120556											
CPXM2	119587	broad.mit.edu	37	chr10	125639677	125639677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtacccacccaccctccCtgaacagggcctaggactgg	9	18	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125639677	A	A	125639677	1	1	135	0	1	0	0	0	0	0	0	0	3870	696	24	2		2	CPXM2	10	125639677	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	7179133	125639677	9895070	102	120557											
OR51Q1	390061	broad.mit.edu	37	chr11	5443439	5443439	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattcatcagtcatgtcccaGgtgactaacaccacacaaga	6	13	3	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5443439	C	C	5443439	3	2	135	1	0	0	0	0	1	0	0	0	11198	991	35	4	11	4	OR51Q1	11	5443439	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08		5443439	129563077	103	120558											
OR5D13	390142	broad.mit.edu	37	chr11	55541387	55541387	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgggggatagtgtgctcCctgatactcacatattttct	9	9	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55541387	T	T	55541387	2	4	135	1	0	0	0	0	0	0	0	1	11248	610	22	4		4	OR5D13	11	55541387	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	50097948	55541387	79465129	104	120559											
ZDHHC5	25921	broad.mit.edu	37	chr11	57457725	57457725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggaagggggaggaatgaGggctaaagggaaaatggctg	19	2	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57457725	T	T	57457725	1	4	135	0	1	0	0	0	0	0	0	0	17744	1015	35	2		2	ZDHHC5	11	57457725	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	1916338	57457725	77548791	105	120560											
ZFP91	80829	broad.mit.edu	37	chr11	58381734	58381734	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taccagcatttgctgaagaaGaaatatgtatgtccccatcc	7	10	0	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58381734	C	C	58381734	3	2	135	1	0	0	0	0	1	0	0	0	17781	933	33	4	1054	4	ZFP91	11	58381734	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	924009	58381734	76624782	106	120561											
MS4A14	84689	broad.mit.edu	37	chr11	60184404	60184404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcaataccaattctggCaattccacaaaggcaatctc	5	12	2	0	rs149015522	byFrequency	TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60184404	A	A	60184404	3	1	135	1	0	0	0	0	1	0	0	0	9952	711	25	3	1981	3	MS4A14	11	60184404	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	1802670	60184404	74822112	107	120562											
CPSF7	79869	broad.mit.edu	37	chr11	61188098	61188098	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagagctacacccccgccCgccaatgtcccaaacccagg	7	19	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61188098	T	T	61188098	1	4	135	0	1	0	0	0	0	0	0	0	3862	667	23	4		4	CPSF7	11	61188098	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	1003694	61188098	73818418	108	120563											
STIP1	10963	broad.mit.edu	37	chr11	63965325	63965325	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtccctctttctttatcaGagcatatgctcgaattggca	7	10	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63965325	C	C	63965325	5	2	135	1	0	0	0	0	0	0	1	0	15403	956	33	4	932	4	STIP1	11	63965325	Splice_Site	SNP	G	TCGA-49-4490-01A-21D-1855-08	2777227	63965325	71041191	109	120564											
MYO7A	4647	broad.mit.edu	37	chr11	76924896	76924896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctctatgccctttctgCtcccccaggatatcctcacc	5	19	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76924896	A	A	76924896	1	1	135	0	1	0	0	0	0	0	0	0	10176	812	28	3		3	MYO7A	11	76924896	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	12959571	76924896	58081620	110	120565											
PANX1	24145	broad.mit.edu	37	chr11	93911638	93911638	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcagacttgaagtttaTcatggaagaacttgacaaag	9	6	2	4			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93911638	C	C	93911638	3	2	135	1	0	0	0	0	1	0	0	0	11514	1435	50	5	435	5	PANX1	11	93911638	Missense_Mutation	SNP	T	TCGA-49-4490-01A-21D-1855-08	16986742	93911638	41094878	111	120566											
CARD16	114769	broad.mit.edu	37	chr11	104915205	104915205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgcctgtgcccctttcGgaataacggagtcaatcaaa	10	11	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104915205	T	T	104915205	3	4	135	1	0	0	0	0	1	0	0	0	2673	1116	39	1	437	1	CARD16	11	104915205	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	11003567	104915205	30091311	112	120567											
DDX6	1656	broad.mit.edu	37	chr11	118626011	118626011	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attactgttaattcactgttCtcatagctactgtactctat	4	9	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118626011	T	T	118626011	1	4	135	0	1	0	0	0	0	0	0	0	4410	928	32	4		4	DDX6	11	118626011	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	13710806	118626011	16380505	113	120568											
DDX6	1656	broad.mit.edu	37	chr11	118627113	118627113	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattatttctcccagacgatCagttctacccaaaatctgtt	4	11	4	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118627113	T	T	118627113	1	4	135	0	1	0	0	0	0	0	0	0	4410	841	29	4		4	DDX6	11	118627113	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	1102	118627113	16379403	114	120569											
NFRKB	4798	broad.mit.edu	37	chr11	129754131	129754131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagatatttctgagtttccCttctgacacctgtgaactac	6	10	2	4			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129754131	A	A	129754131	1	1	135	0	1	0	0	0	0	0	0	0	10479	696	24	2		2	NFRKB	11	129754131	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	11127018	129754131	5252385	115	120570											
USP5	8078	broad.mit.edu	37	chr12	6970051	6970051	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctctccctgactctcccatGaacctttcaggccccattct	4	18	4	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6970051	A	A	6970051	1	1	135	0	1	0	0	0	0	0	0	0	17208	1305	45	4		4	USP5	12	6970051	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08		6970051	126881844	116	120571											
PDE3A	5139	broad.mit.edu	37	chr12	20801573	20801573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatattctcatgatttttGtgattattttcttaaaaagt	5	4	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20801573	T	T	20801573	1	4	135	0	1	0	0	0	0	0	0	0	11731	1392	48	3		3	PDE3A	12	20801573	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	13831522	20801573	113050322	117	120572											
PYROXD1	79912	broad.mit.edu	37	chr12	21621467	21621467	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggaaaatacaatgcaCagggcttaggttcagatcat	11	7	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21621467	G	G	21621467	3	3	135	1	0	0	0	0	1	0	0	0	12974	479	17	4	1328	4	PYROXD1	12	21621467	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	819894	21621467	112230428	118	120573											
FAR2	55711	broad.mit.edu	37	chr12	29450292	29450292	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccttgtccctgctagttcTggtggggaatatactgctaa	10	9	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29450292	A	A	29450292	1	1	135	0	1	0	0	0	0	0	0	0	5732	1595	55	5		5	FAR2	12	29450292	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	7828825	29450292	104401603	119	120574											
C12orf54	121273	broad.mit.edu	37	chr12	48884521	48884521	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccctgcatttgaccaagtCtatagctaatacagtgcagg	8	10	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48884521	G	G	48884521	1	3	135	0	1	0	0	0	0	0	0	0	1712	928	32	4		4	C12orf54	12	48884521	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	19434229	48884521	84967374	120	120575											
TFCP2	7024	broad.mit.edu	37	chr12	51497949	51497949	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tagacttacatctgtgactgGagggggtggctctggctggt	16	7	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51497949	C	C	51497949	3	2	135	1	0	0	0	0	1	0	0	0	15918	1174	41	4	581	4	TFCP2	12	51497949	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	2613428	51497949	82353946	121	120576											
RPS26	6231	broad.mit.edu	37	chr12	56436228	56436228	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaaagaaaagaaggaacaAtggtcgtgccaaaaagggcc	12	7	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56436228	G	G	56436228	3	3	135	1	0	0	0	0	1	0	0	0	13748	101	4	5	29	5	RPS26	12	56436228	Missense_Mutation	SNP	A	TCGA-49-4490-01A-21D-1855-08	4938279	56436228	77415667	122	120577											
CYP27B1	1594	broad.mit.edu	37	chr12	58158086	58158086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttttctctgctatctccCtgcttccatccactagttgc	4	15	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58158086	A	A	58158086	1	1	135	0	1	0	0	0	0	0	0	0	4192	696	24	2		2	CYP27B1	12	58158086	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	1721858	58158086	75693809	123	120578											
FAM119B	25895	broad.mit.edu	37	chr12	58166918	58166918	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagcgctgcagggtgcgtGagctggctttttacgggaga	18	8	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58166918	C	C	58166918	1	2	135	0	1	0	0	0	0	0	0	0	5460	1305	45	4		4	FAM119B	12	58166918	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	8832	58166918	75684977	124	120579											
DCN	1634	broad.mit.edu	37	chr12	91572376	91572376	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggaacctaggaaacaaatGagagatttaagaagagtagc	12	4	0	4			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91572376	A	A	91572376	1	1	135	0	1	0	0	0	0	0	0	0	4330	1305	45	4		4	DCN	12	91572376	5'UTR	SNP	G	TCGA-49-4490-01A-21D-1855-08	33405458	91572376	42279519	125	120580											
GIT2	9815	broad.mit.edu	37	chr12	110390377	110390377	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccctatgcatgaccagcttCcccttagatgccctggtttc	7	15	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110390377	T	T	110390377	1	4	135	0	1	0	0	0	0	0	0	0	6461	870	30	4		4	GIT2	12	110390377	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	18818001	110390377	23461518	126	120581											
RPH3A	22895	broad.mit.edu	37	chr12	113321177	113321177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtgtatcacggcatcaCcgatgaggacatgcaaagga	11	11	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113321177	A	A	113321177	3	1	135	1	0	0	0	0	1	0	0	0	13662	507	18	3	1460	3	RPH3A	12	113321177	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	2930800	113321177	20530718	127	120582											
PLA2G1B	5319	broad.mit.edu	37	chr12	120763618	120763618	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttggcgtgtgccccaccCcgcccccggcaggcactcca	10	21	0	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120763618	T	T	120763618	1	4	135	0	1	0	0	0	0	0	0	0	12089	638	22	4		4	PLA2G1B	12	120763618	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	7442441	120763618	13088277	128	120583											
PITPNM2	57605	broad.mit.edu	37	chr12	123497231	123497231	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctccagcatcagttttaTaaaaggtttcaatgtcgatg	7	7	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123497231	A	A	123497231	3	1	135	1	0	0	0	0	1	0	0	0	12046	1406	49	5	3793	5	PITPNM2	12	123497231	Missense_Mutation	SNP	T	TCGA-49-4490-01A-21D-1855-08	2733613	123497231	10354664	129	120584											
RB1	5925	broad.mit.edu	37	chr13	48916722	48916722	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaatatttgatctttatTttttgttcccagggaggtta	8	4	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48916722	G	G	48916722	1	3	135	0	1	0	0	0	0	0	0	0	13206	1856	64	5		5	RB1	13	48916722	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08		48916722	66253156	130	120585											
PCDH9	5101	broad.mit.edu	37	chr13	67477613	67477613	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttatcagtactaacatgTtctctatagatatatggcat	5	6	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67477613	G	G	67477613	1	3	135	0	1	0	0	0	0	0	0	0	11612	1740	60	5		5	PCDH9	13	67477613	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	18560891	67477613	47692265	131	120586											
TUBGCP3	10426	broad.mit.edu	37	chr13	113143801	113143801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataagtgtcagactgacaGggctgactctgctctcatca	9	10	4	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113143801	T	T	113143801	1	4	135	0	1	0	0	0	0	0	0	0	16893	1015	35	2		2	TUBGCP3	13	113143801	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	45666188	113143801	2026077	132	120587											
OR4Q3	441669	broad.mit.edu	37	chr14	20215725	20215725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaacctcttgatagtgGtaacagtgcaagcccatgct	11	9	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20215725	T	T	20215725	3	4	135	1	0	0	0	0	1	0	0	0	11175	1261	44	3	141	3	OR4Q3	14	20215725	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08		20215725	87133815	133	120588											
RNF31	55072	broad.mit.edu	37	chr14	24621036	24621036	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtctacgcactccccagCtggggccgggcagagctggc	15	15	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24621036	T	T	24621036	2	4	135	1	0	0	0	0	0	0	0	1	13598	796	28	4		4	RNF31	14	24621036	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	4405311	24621036	82728504	134	120589											
TM9SF1	10548	broad.mit.edu	37	chr14	24675466	24675466	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaacccctaaaccagaactGaaatgtctcactaagcagct	6	12	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24675466	A	A	24675466	1	1	135	0	1	0	0	0	0	0	0	0	16100	1305	45	4		4	TM9SF1	14	24675466	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	54430	24675466	82674074	135	120590											
ABHD12B	145447	broad.mit.edu	37	chr14	51352628	51352628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagggtaagtgagatctgCaaatgtgtccttaggcaggt	13	6	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51352628	A	A	51352628	1	1	135	0	1	0	0	0	0	0	0	0	77	725	25	3		3	ABHD12B	14	51352628	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	26677162	51352628	55996912	136	120591											
FOXN3	1112	broad.mit.edu	37	chr14	89756923	89756923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgtttcagctcagtctcTgaaatcacaaggtcattcct	6	11	5	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89756923	C	C	89756923	1	2	135	0	1	0	0	0	0	0	0	0	6081	1595	55	5		5	FOXN3	14	89756923	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	38404295	89756923	17592617	137	120592											
C14orf102	55051	broad.mit.edu	37	chr14	90764706	90764706	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctctccactgtcccaaaAgggttcaaagaattccacct	8	13	2	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90764706	G	G	90764706	3	3	135	1	0	0	0	0	1	0	0	0	1748	72	3	5	1958	5	C14orf102	14	90764706	Missense_Mutation	SNP	A	TCGA-49-4490-01A-21D-1855-08	1007783	90764706	16584834	138	120593											
ZSCAN29	146050	broad.mit.edu	37	chr15	43658995	43658995	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagaccacaccggatttagGaaatggcaatcctgcttgca	11	10	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43658995	A	A	43658995	3	1	135	1	0	0	0	0	1	0	0	0	18365	1174	41	4	2035	4	ZSCAN29	15	43658995	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08		43658995	58872397	139	120594											
SHC4	399694	broad.mit.edu	37	chr15	49126846	49126846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgctccagctggaagGttccagaaaaagcaaatact	9	10	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49126846	T	T	49126846	1	4	135	0	1	0	0	0	0	0	0	0	14386	1276	44	3		3	SHC4	15	49126846	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	5467851	49126846	53404546	140	120595											
SLC24A1	9187	broad.mit.edu	37	chr15	65917985	65917985	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatttcccacagcaacGtgggcattggtaccattgtg	9	11	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65917985	A	A	65917985	3	1	135	1	0	0	0	0	1	0	0	0	14579	1145	40	4		4	SLC24A1	15	65917985	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	16791139	65917985	36613407	141	120596											
ANP32A	8125	broad.mit.edu	37	chr15	69072347	69072347	+	3'UTR	DEL	G	-	-													tttcagggggcaggattggaGgggggggggagaggggatat					rs3214818		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69072347	-	-	69072347	6	5	135	0	1	1	0	1	0	0	0	0	705	1015	35	0		0	ANP32A	15	69072347	3'UTR	DEL	G	TCGA-49-4490-01A-21D-1855-08	3154362	69072347	33459045	142	120597											
SIN3A	25942	broad.mit.edu	37	chr15	75673832	75673832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtactttaagcatccaGgtcctgacccttaaacaggc	7	12	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75673832	T	T	75673832	1	4	135	0	1	0	0	0	0	0	0	0	14438	1015	35	2		2	SIN3A	15	75673832	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	6601485	75673832	26857560	143	120598											
EFTUD1	79631	broad.mit.edu	37	chr15	82532838	82532838	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatcaagcgatcaatcttaTtaatcactaaaaccggacgg	6	10	4	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82532838	C	C	82532838	3	2	135	1	0	0	0	0	1	0	0	0	5000	1493	52	5	2985	5	EFTUD1	15	82532838	Missense_Mutation	SNP	T	TCGA-49-4490-01A-21D-1855-08	6859006	82532838	19998554	144	120599											
POLG	5428	broad.mit.edu	37	chr15	89868515	89868516	+	Intron	INS	-	AG	AG													agtgagtgagagagagagaaINSagagagagagagagggtgtg					rs145083754	by1000genomes	TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	89868516	AG	AG	89868515	6	5	135	0	1	1	1	0	0	0	0	0	12295	29	1	0		0	POLG	15	89868515	Intron	INS	-	TCGA-49-4490-01A-21D-1855-08	7335677	89868515	12662877	145	120600											
EME2	197342	broad.mit.edu	37	chr16	1825999	1825999	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagcaggtgggcccctgCctcctccaagccctccaggt	11	18	0	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1825999	T	T	1825999	1	4	135	0	1	0	0	0	0	0	0	0	5131	754	26	4		4	EME2	16	1825999	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08		1825999	88528754	146	120601											
SEC14L5	9717	broad.mit.edu	37	chr16	5064922	5064922	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagctcagcgccgccacctCgtcctcctcctccggccagt	8	22	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5064922	T	T	5064922	3	4	135	1	0	0	0	0	1	0	0	0	14098	893	31	4	2100	4	SEC14L5	16	5064922	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	3238923	5064922	85289831	147	120602											
ABCC1	4363	broad.mit.edu	37	chr16	16215937	16215937	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctgggggtcagcgtcattCgagccttcgaggagcaggag	17	9	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16215937	T	T	16215937	4	4	135	1	0	0	0	0	0	1	0	0	49	876	31	4	3590	4	ABCC1	16	16215937	Nonsense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	11151015	16215937	74138816	148	120603											
OTOA	146183	broad.mit.edu	37	chr16	21702890	21702890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttattagctgatgcctgtGtttgtgtcatttagatctgc	10	6	2	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21702890	T	T	21702890	1	4	135	0	1	0	0	0	0	0	0	0	11396	1392	48	3		3	OTOA	16	21702890	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	5486953	21702890	68651863	149	120604											
ATP2A1	487	broad.mit.edu	37	chr16	28915339	28915340	+	Intron	INS	-	G	G													ctttgctgtggggctgcagtINSgggggggggcggggtgtctg					rs150083696	by1000genomes	TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28915340	G	G	28915339	6	5	135	0	1	1	1	0	0	0	0	0	1140	1711	59	0		0	ATP2A1	16	28915339	Intron	INS	-	TCGA-49-4490-01A-21D-1855-08	7212449	28915339	61439414	150	120605											
MVP	9961	broad.mit.edu	37	chr16	29845195	29845195	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtaagttctgtctccatAgggctccctgccttcctgtc	9	14	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29845195	G	G	29845195	1	3	135	0	1	0	0	0	0	0	0	0	10090	435	15	5		5	MVP	16	29845195	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	929856	29845195	60509558	151	120606											
CORO1A	11151	broad.mit.edu	37	chr16	30199183	30199183	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggggtgggggtgggaggTgggcaggatgggcctggaga	27	4	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30199183	G	G	30199183	1	3	135	0	1	0	0	0	0	0	0	0	3785	1711	59	5		5	CORO1A	16	30199183	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	353988	30199183	60155570	152	120607											
SETD6	79918	broad.mit.edu	37	chr16	58550737	58550737	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaaccactggaggaagaaGaggatgaaaaggagcccaac	14	7	0	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58550737	C	C	58550737	3	2	135	1	0	0	0	0	1	0	0	0	14248	943	33	4	715	4	SETD6	16	58550737	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	28351554	58550737	31804016	153	120608											
IL34	146433	broad.mit.edu	37	chr16	70693747	70693747	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagctggcgtcctcccggGcatatcctctgctccccggg	12	17	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70693747	A	A	70693747	1	1	135	0	1	0	0	0	0	0	0	0	7764	1218	42	4		4	IL34	16	70693747	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	12143010	70693747	19661006	154	120609											
ZDHHC7	55625	broad.mit.edu	37	chr16	85015442	85015442	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacacgtacccgcagtggcgGatgcgctcgggtttaataca	12	12	0	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85015442	A	A	85015442	1	1	135	0	1	0	0	0	0	0	0	0	17746	1189	41	4		4	ZDHHC7	16	85015442	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	14321695	85015442	5339311	155	120610											
CAMKK1	84254	broad.mit.edu	37	chr17	3779663	3779663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacgtgcccatcatcccCcaggagcaggttggatggct	11	14	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3779663	A	A	3779663	3	1	135	1	0	0	0	0	1	0	0	0	2632	623	22	2	699	2	CAMKK1	17	3779663	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08		3779663	77415547	156	120611											
MED11	400569	broad.mit.edu	37	chr17	4636427	4636427	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgaagcgagtggactatgCccgcctcaagctcagtgatg	12	11	3	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4636427	T	T	4636427	3	4	135	1	0	0	0	0	1	0	0	0	9520	739	26	4	309	4	MED11	17	4636427	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	856764	4636427	76558783	157	120612											
SLC16A13	201232	broad.mit.edu	37	chr17	6941599	6941599	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccttcacatttgcccccTttttccagtggctgctcagc	6	17	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6941599	C	C	6941599	3	2	135	1	0	0	0	0	1	0	0	0	14519	1609	56	5	482	5	SLC16A13	17	6941599	Missense_Mutation	SNP	T	TCGA-49-4490-01A-21D-1855-08	2305172	6941599	74253611	158	120613											
TP53	7157	broad.mit.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578212	A	A	7578212	4	1	135	1	0	0	0	0	0	1	0	0	16505	1066	37	4	657	4	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	636613	7578212	73616998	159	120614											
DNAH2	146754	broad.mit.edu	37	chr17	7643738	7643738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctctccaccggtgcagGttccgtgccggaatcaagga	12	13	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7643738	T	T	7643738	3	4	135	1	0	0	0	0	1	0	0	0	4642	1275	44	3	1411	3	DNAH2	17	7643738	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	65526	7643738	73551472	160	120615											
MYH4	4622	broad.mit.edu	37	chr17	10352023	10352023	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accttgaacagctcagtgctGagagaacgcgactccttctg	10	12	2	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10352023	C	C	10352023	2	2	135	1	0	0	0	0	0	0	0	1	10131	1277	45	4		4	MYH4	17	10352023	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08	2708285	10352023	70843187	161	120616											
FLII	2314	broad.mit.edu	37	chr17	18158295	18158295	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggggcttcagggccaaaggGagacagccagggacttggga	19	8	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18158295	C	C	18158295	1	2	135	0	1	0	0	0	0	0	0	0	5982	1189	41	4		4	FLII	17	18158295	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	7806272	18158295	63036915	162	120617											
MYO1D	4642	broad.mit.edu	37	chr17	31047985	31047985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgatgcactattgtacGgggaggactcccttattctc	11	10	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31047985	T	T	31047985	1	4	135	0	1	0	0	0	0	0	0	0	10165	1131	39	1		1	MYO1D	17	31047985	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	12889690	31047985	50147225	163	120618											
SLFN12L	342615	broad.mit.edu	37	chr17	33849654	33849654	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcctccaaagcctctgCgctgctctcaggactcaggc	10	16	3	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33849654	T	T	33849654	1	4	135	0	1	0	0	0	0	0	0	0	14849	783	27	4		4	SLFN12L	17	33849654	5'UTR	SNP	C	TCGA-49-4490-01A-21D-1855-08	2801669	33849654	47345556	164	120619											
CACNA1G	8913	broad.mit.edu	37	chr17	48678500	48678500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttaactgcatcaccatcGccatggagcgccccaaaatt	6	15	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48678500	A	A	48678500	3	1	135	1	0	0	0	0	1	0	0	0	2570	1087	38	4	3954	4	CACNA1G	17	48678500	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	14828846	48678500	32516710	165	120620											
ARL16	339231	broad.mit.edu	37	chr17	79650121	79650121	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcccggatggtgatcttTctctgtgccacgatgtcagt	11	11	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79650121	C	C	79650121	2	2	135	1	0	0	0	0	0	0	0	1	934	1780	62	5		5	ARL16	17	79650121	Silent	SNP	T	TCGA-49-4490-01A-21D-1855-08	30971621	79650121	1545089	166	120621											
ARHGAP28	79822	broad.mit.edu	37	chr18	6894947	6894947	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctatatagtcttctctggcGacatccaccacatttatgta	5	12	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6894947	A	A	6894947	1	1	135	0	1	0	0	0	0	0	0	0	879	1073	37	4		4	ARHGAP28	18	6894947	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08		6894947	71182301	167	120622											
AFG3L2	10939	broad.mit.edu	37	chr18	12367060	12367060	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatgactccaccccagaaCagagcagtccagaggaagaa	9	12	0	5	rs146182382		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12367060	T	T	12367060	2	4	135	1	0	0	0	0	0	0	0	1	360	465	17	4		4	AFG3L2	18	12367060	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	5472113	12367060	65710188	168	120623											
DSG3	1830	broad.mit.edu	37	chr18	29044412	29044412	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctataagctatcacaacataAcacataaactattatgtgcc	3	10	1	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29044412	G	G	29044412	1	3	135	0	1	0	0	0	0	0	0	0	4818	58	2	5		5	DSG3	18	29044412	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	16677352	29044412	49032836	169	120624											
INO80C	125476	broad.mit.edu	37	chr18	33058369	33058369	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgaaaacattcaaatcccTtctctttttttttctaaaat	1	9	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33058369	C	C	33058369	1	2	135	0	1	0	0	0	0	0	0	0	7818	1624	56	5		5	INO80C	18	33058369	Intron	SNP	T	TCGA-49-4490-01A-21D-1855-08	4013957	33058369	45018879	170	120625											
ACAA2	10449	broad.mit.edu	37	chr18	47322175	47322175	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggttccaaaacgcacatttCtgacacagtagggagcttgg	11	9	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47322175	G	G	47322175	3	3	135	1	0	0	0	0	1	0	0	0	105	913	32	4	832	4	ACAA2	18	47322175	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	14263806	47322175	30755073	171	120626											
SMAD4	4089	broad.mit.edu	37	chr18	48591919	48591919	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacccttctggaggagatcGcttttgtttgggtcaactct	12	9	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48591919	A	A	48591919	3	1	135	1	0	0	0	0	1	0	0	0	14874	1087	38	4	1112	4	SMAD4	18	48591919	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	1269744	48591919	29485329	172	120627											
ADNP2	22850	broad.mit.edu	37	chr18	77894810	77894810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccaggccagacagcccCattgagggttatctctgcag	10	15	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77894810	A	A	77894810	3	1	135	1	0	0	0	0	1	0	0	0	324	594	21	2	1524	2	ADNP2	18	77894810	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	29302891	77894810	182438	173	120628											
CNN2	1265	broad.mit.edu	37	chr19	1031150	1031150	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggcctctccatcggcccCgacttccagaagggcctgaa	10	17	1	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1031150	A	A	1031150	2	1	135	1	0	0	0	0	0	0	0	1	3642	639	23	1		1	CNN2	19	1031150	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08		1031150	58097833	174	120629											
CHAF1A	10036	broad.mit.edu	37	chr19	4408873	4408873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaactttaaacgttcactAgagatggctttctgtctttg	8	7	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4408873	G	G	4408873	1	3	135	0	1	0	0	0	0	0	0	0	3342	435	15	5		5	CHAF1A	19	4408873	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	3377723	4408873	54720110	175	120630											
LONP1	9361	broad.mit.edu	37	chr19	5699070	5699071	+	Frame_Shift_Ins	INS	-	C	C													tctcagccacgtcagtcatgINScccccgacgctgaagcggaa					rs147331639	byFrequency	TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5699071	C	C	5699070	7	5	135	1	0	1	1	0	0	0	0	0	8979	1306	46	0	1262	0	LONP1	19	5699070	Frame_Shift_Ins	INS	-	TCGA-49-4490-01A-21D-1855-08	1290197	5699070	53429913	176	120631											
RDH8	50700	broad.mit.edu	37	chr19	10127840	10127840	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctggacgtgtgcagtgatGagtcggtggcccagtgtctc	16	9	1	2	rs144177019		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10127840	C	C	10127840	3	2	135	1	0	0	0	0	1	0	0	0	13304	1291	45	4	217	4	RDH8	19	10127840	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	4428770	10127840	49001143	177	120632											
MRPL4	51073	broad.mit.edu	37	chr19	10368919	10368919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgttgcccatggcccccGgggccccacaagttactact	11	15	0	0	rs148608571		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10368919	T	T	10368919	3	4	135	1	0	0	0	0	1	0	0	0	9897	1116	39	1	489	1	MRPL4	19	10368919	Missense_Mutation	SNP	G	TCGA-49-4490-01A-21D-1855-08	241079	10368919	48760064	178	120633											
IL27RA	9466	broad.mit.edu	37	chr19	14150582	14150582	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaagccaaacgcccccCggctgggccctgacgtggac	13	16	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14150582	A	A	14150582	2	1	135	1	0	0	0	0	0	0	0	1	7751	643	23	1		1	IL27RA	19	14150582	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	3781663	14150582	44978401	179	120634											
F2RL3	9002	broad.mit.edu	37	chr19	17000388	17000388	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctctctctcccagacagCacgccctcaatcctgcctgc	5	22	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17000388	G	G	17000388	3	3	135	1	0	0	0	0	1	0	0	0	5389	709	25	4	120	4	F2RL3	19	17000388	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	2849806	17000388	42128595	180	120635											
SPTBN4	57731	broad.mit.edu	37	chr19	41071177	41071178	+	Intron	INS	-	AAAAG	AAAAG													gagactttatctcaaaaaaaINSaaaagaaaagaaaagaaaag					rs112419378		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAAAG	41071178	AAAAG	AAAAG	41071177	6	5	135	0	1	1	1	0	0	0	0	0	15239	29	1	0		0	SPTBN4	19	41071177	Intron	INS	-	TCGA-49-4490-01A-21D-1855-08	24070789	41071177	18057806	181	120636											
NUMBL	9253	broad.mit.edu	37	chr19	41188891	41188891	+	Intron	DEL	G	-	-													gtacttgggttggagggaatGgggggggggacatgaaacag							TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41188891	-	-	41188891	6	5	135	0	1	1	0	1	0	0	0	0	10847	1363	47	0		0	NUMBL	19	41188891	Intron	DEL	G	TCGA-49-4490-01A-21D-1855-08	117714	41188891	17940092	182	120637											
BCL2L12	83596	broad.mit.edu	37	chr19	50170394	50170394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttgctctctgcccatcCgcccctgctatggtttagag	10	15	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50170394	T	T	50170394	3	4	135	1	0	0	0	0	1	0	0	0	1375	652	23	4	488	4	BCL2L12	19	50170394	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	8981503	50170394	8958589	183	120638											
C19orf41	126123	broad.mit.edu	37	chr19	50655863	50655863	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccttacccccaaaccaccGtcctactgcagcaggagttt	6	17	0	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50655863	A	A	50655863	1	1	135	0	1	0	0	0	0	0	0	0	1943	1160	40	4		4	C19orf41	19	50655863	3'UTR	SNP	G	TCGA-49-4490-01A-21D-1855-08	485469	50655863	8473120	184	120639											
SIRPB2	284759	broad.mit.edu	37	chr20	1460761	1460761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggaaggacttggagccCtaaatgacaagcttaaaaca	11	8	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1460761	A	A	1460761	1	1	135	0	1	0	0	0	0	0	0	0	14447	696	24	2		2	SIRPB2	20	1460761	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08		1460761	61564759	185	120640											
TMX4	56255	broad.mit.edu	37	chr20	7962846	7962846	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacaaactgcaggccaaaGggaagctgacatattgtttt	11	7	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7962846	T	T	7962846	1	4	135	0	1	0	0	0	0	0	0	0	16392	1015	35	2		2	TMX4	20	7962846	3'UTR	SNP	G	TCGA-49-4490-01A-21D-1855-08	6502085	7962846	55062674	186	120641											
PREX1	57580	broad.mit.edu	37	chr20	47274793	47274793	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggcagaaggaacccGgtcagggagcgaggtgggcc	19	11	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47274793	A	A	47274793	1	1	135	0	1	0	0	0	0	0	0	0	12582	1131	39	4		4	PREX1	20	47274793	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	39311947	47274793	15750727	187	120642											
OGFR	11054	broad.mit.edu	37	chr20	61441059	61441059	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggggttggcgaggccacAgggggagggccctcccaggc	21	11	0	0	rs3833337		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61441059	G	G	61441059	1	3	135	0	1	0	0	0	0	0	0	0	10938	203	7	5		5	OGFR	20	61441059	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	14166266	61441059	1584461	188	120643											
C22orf29	79680	broad.mit.edu	37	chr22	19839740	19839740	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcataattggcggctgcccaGatgggaatgcgagggccctg	16	10	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19839740	A	A	19839740	2	1	135	1	0	0	0	0	0	0	0	1	2163	932	33	4		4	C22orf29	22	19839740	Silent	SNP	G	TCGA-49-4490-01A-21D-1855-08		19839740	31464826	189	120644											
DNAJB7	150353	broad.mit.edu	37	chr22	41257814	41257814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatttatcataaatgtccCgtttctcatcatttgataat	3	8	3	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41257814	A	A	41257814	3	1	135	1	0	0	0	0	1	0	0	0	4665	652	23	1	748	1	DNAJB7	22	41257814	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	21418074	41257814	10046752	190	120645											
ACO2	50	broad.mit.edu	37	chr22	41919908	41919908	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcacgggccgcaacgacgCaaaccccgagacccatgcct	9	18	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41919908	T	T	41919908	3	4	135	1	0	0	0	0	1	0	0	0	147	710	25	4	1491	4	ACO2	22	41919908	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	662094	41919908	9384658	191	120646											
MAPK12	6300	broad.mit.edu	37	chr22	50694207	50694207	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggagccatccccacccGcccctggtgccgccctgcgg	13	20	0	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50694207	A	A	50694207	1	1	135	0	1	0	0	0	0	0	0	0	9366	1102	38	4		4	MAPK12	22	50694207	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	8774299	50694207	610359	192	120647											
LMF2	91289	broad.mit.edu	37	chr22	50942750	50942750	+	Intron	SNP	A	C	C													caccccgggctccacaccccAcccggtgcccagccttaccc							TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50942750	C	C	50942750	1	2	135	0	1	0	0	0	0	0	0	0	8920	174	6	5		5	LMF2	22	50942750	Intron	SNP	A	TCGA-49-4490-01A-21D-1855-08	248543	50942750	361816	193	120648	525	2									
LMF2	91289	broad.mit.edu	37	chr22	50942753	50942753	+	Intron	SNP	C	T	T													cccgggctccacaccccaccCggtgcccagccttacccctg							TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50942753	T	T	50942753	1	4	135	0	1	0	0	0	0	0	0	0	8920	667	23	4		4	LMF2	22	50942753	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	3	50942753	361813	194	120649	525	2									
ATXN3L	92552	broad.mit.edu	37	chrX	13337402	13337402	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggtctgatgttccagactCatcactttcttctgatactt	6	10	5	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13337402	G	G	13337402	3	3	135	1	0	0	0	0	1	0	0	0	1218	835	29	4	419	4	ATXN3L	23	13337402	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08		13337402	141933158	195	120650											
GRPR	2925	broad.mit.edu	37	chrX	16170263	16170263	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggtggctttgtgaactcctCtattgccctaattgtttttc	8	10	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16170263	A	A	16170263	1	1	135	0	1	0	0	0	0	0	0	0	6874	928	32	3		3	GRPR	23	16170263	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	2832861	16170263	139100297	196	120651											
CNKSR2	22866	broad.mit.edu	37	chrX	21609394	21609394	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagacttatattttaaaatCgtataatcaccttaaggcca	5	7	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21609394	T	T	21609394	1	4	135	0	1	0	0	0	0	0	0	0	3639	899	31	4		4	CNKSR2	23	21609394	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	5439131	21609394	133661166	197	120652											
NDUFB11	54539	broad.mit.edu	37	chrX	47001817	47001817	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcacaagcctctcagcttCgcggcgggaccactctttca	8	15	4	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47001817	T	T	47001817	3	4	135	1	0	0	0	0	1	0	0	0	10375	893	31	4	104	4	NDUFB11	23	47001817	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	25392423	47001817	108268743	198	120653											
SSX3	10214	broad.mit.edu	37	chrX	48214185	48214185	+	Intron	DEL	C	-	-													gcaatatcatcgaaggcctaCaaaaaaaaaaaaaaggaatt							TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48214185	-	-	48214185	6	5	135	0	1	1	0	1	0	0	0	0	15323	493	17	0		0	SSX3	23	48214185	Intron	DEL	C	TCGA-49-4490-01A-21D-1855-08	1212368	48214185	107056375	199	120654											
SYP	6855	broad.mit.edu	37	chrX	49048091	49048091	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcctgcatcgccgtaggCgtccccgggtgccggttgtt	15	13	0	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49048091	T	T	49048091	3	4	135	1	0	0	0	0	1	0	0	0	15580	768	27	4	200	4	SYP	23	49048091	Missense_Mutation	SNP	C	TCGA-49-4490-01A-21D-1855-08	833906	49048091	106222469	200	120655											
UBQLN2	29978	broad.mit.edu	37	chrX	56591554	56591554	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctgaatagcccgctgttTactgcaaatcctcagctgca	8	12	1	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56591554	C	C	56591554	2	2	135	1	0	0	0	0	0	0	0	1	17023	1751	61	5		5	UBQLN2	23	56591554	Silent	SNP	T	TCGA-49-4490-01A-21D-1855-08	7543463	56591554	98679006	201	120656											
ATRX	546	broad.mit.edu	37	chrX	76920008	76920008	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttggcctcccaaagtcctGagattataggcgtgagccac	10	12	0	2			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76920008	A	A	76920008	1	1	135	0	1	0	0	0	0	0	0	0	1212	1305	45	4		4	ATRX	23	76920008	Intron	SNP	G	TCGA-49-4490-01A-21D-1855-08	20328454	76920008	78350552	202	120657											
DACH2	117154	broad.mit.edu	37	chrX	85559927	85559927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctactggtcagtggagccCctgactaagaggcccagtga	12	11	2	3			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85559927	A	A	85559927	1	1	135	0	1	0	0	0	0	0	0	0	4254	638	22	2		2	DACH2	23	85559927	Intron	SNP	C	TCGA-49-4490-01A-21D-1855-08	8639919	85559927	69710633	203	120658											
TAF7L	54457	broad.mit.edu	37	chrX	100532631	100532631	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgtggctgctcattccCgaggatatcaaaaatcctgg	10	10	2	0			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100532631	A	A	100532631	2	1	135	1	0	0	0	0	0	0	0	1	15652	639	23	1		1	TAF7L	23	100532631	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	14972704	100532631	54737929	204	120659											
DCX	1641	broad.mit.edu	37	chrX	110654183	110654183	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatttcagtacaatgactaTgaagggggagtgttttcatt	11	5	2	2	rs150627878		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110654183	C	C	110654183	3	2	135	1	0	0	0	0	1	0	0	0	4351	1464	51	5	1348	5	DCX	23	110654183	Missense_Mutation	SNP	T	TCGA-49-4490-01A-21D-1855-08	10121552	110654183	44616377	205	120660											
BGN	633	broad.mit.edu	37	chrX	152772565	152772565	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcctgagcttcctgccCaccctccgggagctccactt	11	17	0	1			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152772565	A	A	152772565	2	1	135	1	0	0	0	0	0	0	0	1	1424	581	21	2		2	BGN	23	152772565	Silent	SNP	C	TCGA-49-4490-01A-21D-1855-08	42118382	152772565	2497995	206	120661											
ACTRT2	140625	broad.mit.edu	37	chr1	2939237	2939237	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctccaaggacacccccatCaagatcacggctccccccga	7	20	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2939237	A	A	2939237	2	1	136	1	0	0	0	0	0	0	0	1	219	816	29	3		3	ACTRT2	1	2939237	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08		2939237	246311384	1	120662											
CROCC	9696	broad.mit.edu	37	chr1	17257775	17257775	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacccttccctcggcatgtCttccctccagtccttcaacg	5	19	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17257775	G	G	17257775	1	3	136	0	1	0	0	0	0	0	0	0	3925	928	32	4		4	CROCC	1	17257775	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	14318538	17257775	231992846	2	120663											
AK2	204	broad.mit.edu	37	chr1	33478636	33478636	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatgagagtagcacacaCgccaaagatacatcaagcaa	8	10	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33478636	A	A	33478636	1	1	136	0	1	0	0	0	0	0	0	0	440	551	19	3		3	AK2	1	33478636	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	16220861	33478636	215771985	3	120664											
CSMD2	114784	broad.mit.edu	37	chr1	34286094	34286094	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccgagcctagtcttttgCccctttcgggtatgccaggg	11	12	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34286094	T	T	34286094	3	4	136	1	0	0	0	0	1	0	0	0	3979	739	26	4	9656	4	CSMD2	1	34286094	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	807458	34286094	214964527	4	120665											
RLF	6018	broad.mit.edu	37	chr1	40701712	40701712	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgaagaaaatgcaccGgttccaaattctcttcgatg	8	8	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40701712	A	A	40701712	2	1	136	1	0	0	0	0	0	0	0	1	13500	1103	39	4		4	RLF	1	40701712	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	6415618	40701712	208548909	5	120666											
ELOVL1	64834	broad.mit.edu	37	chr1	43829566	43829566	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaggcacttaggtgggCgcctatctaggccatgcttc	12	12	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43829566	A	A	43829566	1	1	136	0	1	0	0	0	0	0	0	0	5115	783	27	3		3	ELOVL1	1	43829566	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	3127854	43829566	205421055	6	120667											
LHX8	431707	broad.mit.edu	37	chr1	75596528	75596528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagacacggtctcctaaCcctgaaccaagtgtgacatc	7	14	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75596528	A	A	75596528	1	1	136	0	1	0	0	0	0	0	0	0	8848	522	18	3		3	LHX8	1	75596528	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	31766962	75596528	173654093	7	120668											
ELTD1	64123	broad.mit.edu	37	chr1	79357333	79357333	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccccaaagatccaggtgGtgccgagaaggaacagaaga	13	9	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79357333	A	A	79357333	3	1	136	1	0	0	0	0	1	0	0	0	5126	1261	44	4	194	4	ELTD1	1	79357333	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	3760805	79357333	169893288	8	120669											
TGFBR3	7049	broad.mit.edu	37	chr1	92200205	92200205	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggcctggggccaaatgaCccctcaggtcccttccaggt	12	14	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92200205	T	T	92200205	1	4	136	0	1	0	0	0	0	0	0	0	15946	522	18	4		4	TGFBR3	1	92200205	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	12842872	92200205	157050416	9	120670											
DNTTIP2	30836	broad.mit.edu	37	chr1	94342195	94342195	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatctttaccctgagatgtGttgggcgcagacgtgtatag	12	7	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94342195	A	A	94342195	2	1	136	1	0	0	0	0	0	0	0	1	4722	1368	48	4		4	DNTTIP2	1	94342195	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	2141990	94342195	154908426	10	120671											
COL11A1	1301	broad.mit.edu	37	chr1	103352528	103352528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaagaatattatcatctgCatctgcttgcatgccttcag	6	10	5	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103352528	A	A	103352528	3	1	136	1	0	0	0	0	1	0	0	0	3699	710	25	3	747	3	COL11A1	1	103352528	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	9010333	103352528	145898093	11	120672											
ATP1A1	476	broad.mit.edu	37	chr1	116943326	116943326	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcccatccctcatagccTgtgagtgaccaggcaattct	7	15	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116943326	C	C	116943326	1	2	136	0	1	0	0	0	0	0	0	0	1132	1595	55	5		5	ATP1A1	1	116943326	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	13590798	116943326	132307295	12	120673											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149785259	149785259	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctcattgataggagaggGtctaggcagtcatatttata	11	5	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149785259	A	A	149785259	1	1	136	0	1	0	0	0	0	0	0	0	7247	1276	44	4		4	HIST2H2BF	1	149785259	5'Flank	SNP	G	TCGA-49-4494-01A-01D-1265-08	32841933	149785259	99465362	13	120674											
ANXA9	8416	broad.mit.edu	37	chr1	150967858	150967858	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatttccgtgtttggctgaAcctgggagaccagctgggcc	14	10	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150967858	G	G	150967858	1	3	136	0	1	0	0	0	0	0	0	0	727	58	2	5		5	ANXA9	1	150967858	3'UTR	SNP	A	TCGA-49-4494-01A-01D-1265-08	1182599	150967858	98282763	14	120675											
SPRR2A	6700	broad.mit.edu	37	chr1	153028924	153028924	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctttgatgagaagatgaaGgtggagctgtggaacgaggt	18	3	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153028924	A	A	153028924	1	1	136	0	1	0	0	0	0	0	0	0	15215	1015	35	4		4	SPRR2A	1	153028924	3'UTR	SNP	G	TCGA-49-4494-01A-01D-1265-08	2061066	153028924	96221697	15	120676											
NTRK1	4914	broad.mit.edu	37	chr1	156849038	156849038	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatggtgtacctggcgggtCtgcattttgtgcaccgggac	16	9	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156849038	A	A	156849038	3	1	136	1	0	0	0	0	1	0	0	0	10801	912	32	3	2118	3	NTRK1	1	156849038	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	3820114	156849038	92401583	16	120677											
PEAR1	375033	broad.mit.edu	37	chr1	156873562	156873562	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttcaggagtgaggtgtaGgggagctggagctcagagca	18	6	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156873562	A	A	156873562	1	1	136	0	1	0	0	0	0	0	0	0	11806	1015	35	4		4	PEAR1	1	156873562	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	24524	156873562	92377059	17	120678											
FCRL5	83416	broad.mit.edu	37	chr1	157497764	157497765	+	Intron	INS	-	A	A													cctagccagaacaatcagacINSaagagaaagaaataaaggac							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157497765	A	A	157497764	6	5	136	0	1	1	1	0	0	0	0	0	5855	493	17	0		0	FCRL5	1	157497764	Intron	INS	-	TCGA-49-4494-01A-01D-1265-08	624202	157497764	91752857	18	120679											
CD1A	909	broad.mit.edu	37	chr1	158226831	158226831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcacagcagtctagaggGccaggacatcgtcctctact	11	12	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158226831	T	T	158226831	3	4	136	1	0	0	0	0	1	0	0	0	3004	1203	42	3	874	3	CD1A	1	158226831	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	729067	158226831	91023790	19	120680											
SPTA1	6708	broad.mit.edu	37	chr1	158605958	158605958	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgggactttgtgagggtccTgaaagtccagggagaatgat	15	6	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158605958	A	A	158605958	1	1	136	0	1	0	0	0	0	0	0	0	15234	1595	55	5		5	SPTA1	1	158605958	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	379127	158605958	90644663	20	120681											
PVRL4	81607	broad.mit.edu	37	chr1	161049685	161049685	+	Frame_Shift_Del	DEL	C	-	-													agggcagttttgcgtcctggCccagcaccacagttaccacg							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	161049685	-	-	161049685	7	5	136	1	0	1	0	1	0	0	0	0	12950	739	26	0	1430	0	PVRL4	1	161049685	Frame_Shift_Del	DEL	C	TCGA-49-4494-01A-01D-1265-08	2443727	161049685	88200936	21	120682											
SLC19A2	10560	broad.mit.edu	37	chr1	169437326	169437326	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caagtcacacatactaccttCgatgccaaaggagagatctt	7	11	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169437326	G	G	169437326	1	3	136	0	1	0	0	0	0	0	0	0	14542	899	31	4		4	SLC19A2	1	169437326	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	8387641	169437326	79813295	22	120683											
FMO1	2326	broad.mit.edu	37	chr1	171252228	171252228	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcatctttatccataagtCaacagctagacctaaactta	4	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171252228	A	A	171252228	1	1	136	0	1	0	0	0	0	0	0	0	6012	841	29	3		3	FMO1	1	171252228	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1814902	171252228	77998393	23	120684											
ASTN1	460	broad.mit.edu	37	chr1	176845616	176845616	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccttctgtcctcatagcaAgtggtgggtacctggggcat	13	10	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176845616	T	T	176845616	1	4	136	0	1	0	0	0	0	0	0	0	1068	87	3	5		5	ASTN1	1	176845616	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	5593388	176845616	72405005	24	120685											
SEC16B	89866	broad.mit.edu	37	chr1	177911130	177911130	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaatgcaaagcctgggacaCgaggccataatctgccagac	11	11	1	1	rs139593986	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177911130	T	T	177911130	3	4	136	1	0	0	0	0	1	0	0	0	14100	536	19	4	1299	4	SEC16B	1	177911130	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1065514	177911130	71339491	25	120686											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179820234	179820234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgaagggaggtgatgcCcttttccgccatccagaaaa	10	10	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179820234	A	A	179820234	3	1	136	1	0	0	0	0	1	0	0	0	16497	623	22	2	1125	2	TOR1AIP2	1	179820234	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1909104	179820234	69430387	26	120687											
CACNA1E	777	broad.mit.edu	37	chr1	181745281	181745281	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatggacaactttgagtaCctgactcgggactcctccat	8	12	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181745281	A	A	181745281	4	1	136	1	0	0	0	0	0	1	0	0	2568	518	18	3	5334	3	CACNA1E	1	181745281	Nonsense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1925047	181745281	67505340	27	120688											
CACNA1E	777	broad.mit.edu	37	chr1	181765801	181765801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcttttgtcacctctcaCaggccacaagtctgacactc	7	14	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181765801	A	A	181765801	1	1	136	0	1	0	0	0	0	0	0	0	2568	493	17	3		3	CACNA1E	1	181765801	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	20520	181765801	67484820	28	120689											
GLT25D2	23127	broad.mit.edu	37	chr1	183942605	183942605	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attggacccagatttactgcCcttcctaaaaaatgcttgct	6	11	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183942605	T	T	183942605	1	4	136	0	1	0	0	0	0	0	0	0	6531	638	22	4		4	GLT25D2	1	183942605	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	2176804	183942605	65308016	29	120690											
KCNT2	343450	broad.mit.edu	37	chr1	196311175	196311175	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgatatgcttgactgattGatattttaatttttctctga	6	5	1	5			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196311175	C	C	196311175	1	2	136	0	1	0	0	0	0	0	0	0	8162	1305	45	4		4	KCNT2	1	196311175	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	12368570	196311175	52939446	30	120691											
CRB1	23418	broad.mit.edu	37	chr1	197390454	197390454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgtgggtcaaaagtgGctcagtgacaaccaagggct	12	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197390454	T	T	197390454	3	4	136	1	0	0	0	0	1	0	0	0	3880	1203	42	3	1518	3	CRB1	1	197390454	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1079279	197390454	51860167	31	120692											
TMEM9	252839	broad.mit.edu	37	chr1	201120964	201120964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggacagatgcatttgcacCggatatcttcagaactctgg	11	9	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201120964	T	T	201120964	3	4	136	1	0	0	0	0	1	0	0	0	16340	652	23	4	484	4	TMEM9	1	201120964	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	3730510	201120964	48129657	32	120693											
IPO9	55705	broad.mit.edu	37	chr1	201844234	201844234	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaccactcagggcctgatCatgggcctttgtcctgaccc	9	15	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201844234	A	A	201844234	1	1	136	0	1	0	0	0	0	0	0	0	7869	841	29	3		3	IPO9	1	201844234	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	723270	201844234	47406387	33	120694											
CHIT1	1118	broad.mit.edu	37	chr1	203194756	203194756	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaggttatctgtcaccCcaccacatcccacccaccct	7	18	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203194756	T	T	203194756	1	4	136	0	1	0	0	0	0	0	0	0	3377	638	22	4		4	CHIT1	1	203194756	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1350522	203194756	46055865	34	120695											
PLEKHA6	22874	broad.mit.edu	37	chr1	204237400	204237400	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcttcatggagtgtgagCgcttgccaaaggcgacggct	14	11	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204237400	T	T	204237400	3	4	136	1	0	0	0	0	1	0	0	0	12155	768	27	4	3079	4	PLEKHA6	1	204237400	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1042644	204237400	45013221	35	120696											
MFSD4	148808	broad.mit.edu	37	chr1	205549685	205549685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagagggtggggctgggGgagggggctcagtgtgggtc	26	5	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205549685	T	T	205549685	1	4	136	0	1	0	0	0	0	0	0	0	9626	1247	43	2		2	MFSD4	1	205549685	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1312285	205549685	43700936	36	120697											
RASSF5	83593	broad.mit.edu	37	chr1	206702584	206702584	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagaagcagaggccgttgGcccaggctgagaagagagct	16	8	0	5			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206702584	A	A	206702584	1	1	136	0	1	0	0	0	0	0	0	0	13197	1218	42	4		4	RASSF5	1	206702584	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1152899	206702584	42548037	37	120698											
KCNH1	3756	broad.mit.edu	37	chr1	211276960	211276960	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaactgcaaacaaccaaaGaactcaagttagattaagaa	5	7	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211276960	A	A	211276960	1	1	136	0	1	0	0	0	0	0	0	0	8101	957	33	4		4	KCNH1	1	211276960	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	4574376	211276960	37973661	38	120699											
USH2A	7399	broad.mit.edu	37	chr1	216497577	216497577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtttttcattccaaaagCaccacaattcctggcaaaat	4	10	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216497577	A	A	216497577	3	1	136	1	0	0	0	0	1	0	0	0	17162	710	25	3	14625	3	USH2A	1	216497577	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	5220617	216497577	32753044	39	120700											
MIA3	375056	broad.mit.edu	37	chr1	222814760	222814760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcaacagattcttcagGtcttagcagtagcctgagct	9	10	4	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222814760	T	T	222814760	1	4	136	0	1	0	0	0	0	0	0	0	9658	1276	44	3		3	MIA3	1	222814760	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6317183	222814760	26435861	40	120701											
C1orf95	375057	broad.mit.edu	37	chr1	226784558	226784558	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcaccgacctcccggaCaggcatgtgtgctgcgtctt	12	16	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226784558	G	G	226784558	3	3	136	1	0	0	0	0	1	0	0	0	2094	477	17	4	264	4	C1orf95	1	226784558	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	3969798	226784558	22466063	41	120702											
OBSCN	84033	broad.mit.edu	37	chr1	228565299	228565299	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacctgaggtccgagaacAtgatcatcaccgaatacaac	9	11	2	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228565299	G	G	228565299	3	3	136	1	0	0	0	0	1	0	0	0	10907	217	8	5	25001	5	OBSCN	1	228565299	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08	1780741	228565299	20685322	42	120703											
TRIM11	81559	broad.mit.edu	37	chr1	228584918	228584918	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcagtgaccatcgcttgctCctggagtcccctccccgccc	9	19	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228584918	A	A	228584918	1	1	136	0	1	0	0	0	0	0	0	0	16611	870	30	3		3	TRIM11	1	228584918	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	19619	228584918	20665703	43	120704											
CAPN9	10753	broad.mit.edu	37	chr1	230895163	230895163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtagaaaagatgtggccaCatctgaaactccccacatcc	8	12	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230895163	A	A	230895163	1	1	136	0	1	0	0	0	0	0	0	0	2658	493	17	3		3	CAPN9	1	230895163	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	2310245	230895163	18355458	44	120705											
TRIM67	440730	broad.mit.edu	37	chr1	231349585	231349585	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtggcgtgtgcaagggGgccaccgtgggcgtgctgct	20	9	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231349585	A	A	231349585	2	1	136	1	0	0	0	0	0	0	0	1	16665	1219	43	4		4	TRIM67	1	231349585	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	454422	231349585	17901036	45	120706											
PCNXL2	80003	broad.mit.edu	37	chr1	233344406	233344406	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcacacaaaaatagattggTctgctatatgttatgatttg	8	5	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233344406	A	A	233344406	3	1	136	1	0	0	0	0	1	0	0	0	11686	1664	58	5	3780	5	PCNXL2	1	233344406	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	1994821	233344406	15906215	46	120707											
RYR2	6262	broad.mit.edu	37	chr1	237516168	237516168	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatttggataggtatacaaGggtgggtgaggagacaactc	14	5	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237516168	A	A	237516168	1	1	136	0	1	0	0	0	0	0	0	0	13880	1015	35	4		4	RYR2	1	237516168	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	4171762	237516168	11734453	47	120708											
RYR2	6262	broad.mit.edu	37	chr1	237813354	237813354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctgttcacttaccaaaGctcagcgggattccatagaa	10	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237813354	T	T	237813354	3	4	136	1	0	0	0	0	1	0	0	0	13880	971	34	3	7888	3	RYR2	1	237813354	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	297186	237813354	11437267	48	120709											
RYR2	6262	broad.mit.edu	37	chr1	237982266	237982266	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattaggaactacagagatAactcgggtttgtcgagaaaa	12	5	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237982266	T	T	237982266	1	4	136	0	1	0	0	0	0	0	0	0	13880	377	13	5		5	RYR2	1	237982266	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	168912	237982266	11268355	49	120710											
ZP4	57829	broad.mit.edu	37	chr1	238050587	238050587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagtcacaagtatcgttcaCggccaacatatttcagctct	7	11	4	0	rs144651556	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238050587	T	T	238050587	1	4	136	0	1	0	0	0	0	0	0	0	18347	551	19	4		4	ZP4	1	238050587	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	68321	238050587	11200034	50	120711											
FMN2	56776	broad.mit.edu	37	chr1	240371509	240371509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcgggcataccccctcctCcccctcttcccggagcgggc	11	20	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240371509	A	A	240371509	3	1	136	1	0	0	0	0	1	0	0	0	6008	855	30	3	3415	3	FMN2	1	240371509	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2320922	240371509	8879112	51	120712											
RGS7	6000	broad.mit.edu	37	chr1	240933903	240933903	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccataacaggtactgattttAccaaccacatatttaagacg	5	10	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240933903	G	G	240933903	1	3	136	0	1	0	0	0	0	0	0	0	13419	406	14	5		5	RGS7	1	240933903	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	562394	240933903	8316718	52	120713											
EXO1	9156	broad.mit.edu	37	chr1	242052698	242052698	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgtccctctattttgtccAggtagaatatttcttctcta	5	10	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242052698	T	T	242052698	1	4	136	0	1	0	0	0	0	0	0	0	5342	203	7	5		5	EXO1	1	242052698	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	1118795	242052698	7197923	53	120714											
ZNF512	84450	broad.mit.edu	37	chr2	27844189	27844189	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgagacagagctgagtcttaGagtagggaaggatcagagga	16	5	2	5			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27844189	C	C	27844189	3	2	136	1	0	0	0	0	1	0	0	0	18083	942	33	4	1619	4	ZNF512	2	27844189	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08		27844189	215355184	54	120715											
PLB1	151056	broad.mit.edu	37	chr2	28761084	28761084	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctagatggtgcctttgccTgtggtcttgcctggcaggga	15	9	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28761084	A	A	28761084	1	1	136	0	1	0	0	0	0	0	0	0	12119	1595	55	5		5	PLB1	2	28761084	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	916895	28761084	214438289	55	120716											
LCLAT1	253558	broad.mit.edu	37	chr2	30863299	30863299	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgctctctatactgtattgGaccctgttcagccctgcaat	7	12	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30863299	C	C	30863299	3	2	136	1	0	0	0	0	1	0	0	0	8749	1183	41	4	1081	4	LCLAT1	2	30863299	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	2102215	30863299	212336074	56	120717											
THADA	63892	broad.mit.edu	37	chr2	43801837	43801837	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccaaacaaccaaggcacGtgtactttcctttaatatgc	5	12	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43801837	A	A	43801837	3	1	136	1	0	0	0	0	1	0	0	0	15963	1145	40	4	4606	4	THADA	2	43801837	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	12938538	43801837	199397536	57	120718											
LRPPRC	10128	broad.mit.edu	37	chr2	44204416	44204416	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacatcatacacagcacCtacaaatgaaatttaaaatg	3	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44204416	A	A	44204416	5	1	136	1	0	0	0	0	0	0	1	0	9052	695	24	2	3855	2	LRPPRC	2	44204416	Splice_Site	SNP	C	TCGA-49-4494-01A-01D-1265-08	402579	44204416	198994957	58	120719											
NRXN1	9378	broad.mit.edu	37	chr2	50148973	50148973	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccttcctgattgcattccCtgtcttcttttgtatgtgct	6	11	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50148973	T	T	50148973	1	4	136	0	1	0	0	0	0	0	0	0	10760	696	24	4		4	NRXN1	2	50148973	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	5944557	50148973	193050400	59	120720											
MXD1	4084	broad.mit.edu	37	chr2	70164318	70164318	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgcgggggccattgcccAtttagagatctccctgtggg	14	10	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70164318	G	G	70164318	1	3	136	0	1	0	0	0	0	0	0	0	10093	232	8	5		5	MXD1	2	70164318	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	20015345	70164318	173035055	60	120721											
ALMS1	7840	broad.mit.edu	37	chr2	73716671	73716671	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcatggtctaatcttagCgtgggtataaaactgatttg	9	7	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73716671	T	T	73716671	1	4	136	0	1	0	0	0	0	0	0	0	535	783	27	4		4	ALMS1	2	73716671	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	3552353	73716671	169482702	61	120722											
MTHFD2	10797	broad.mit.edu	37	chr2	74438449	74438449	+	Intron	DEL	C	-	-													aagggggatggagggaaggaCttcacctcagaagaggaggt							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74438449	-	-	74438449	6	5	136	0	1	1	0	1	0	0	0	0	10023	580	20	0		0	MTHFD2	2	74438449	Intron	DEL	C	TCGA-49-4494-01A-01D-1265-08	721778	74438449	168760924	62	120723											
LRRTM4	80059	broad.mit.edu	37	chr2	77746912	77746912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagctctctgagcacccGtgagcataacaagcagcagt	11	12	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77746912	T	T	77746912	3	4	136	1	0	0	0	0	1	0	0	0	9129	1145	40	3	1703	3	LRRTM4	2	77746912	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	3308463	77746912	165452461	63	120724											
CTNNA2	1496	broad.mit.edu	37	chr2	80808957	80808957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcacgggtgagtggacacCtaagactttggcttggcaca	14	10	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80808957	A	A	80808957	1	1	136	0	1	0	0	0	0	0	0	0	4047	696	24	2		2	CTNNA2	2	80808957	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	3062045	80808957	162390416	64	120725											
RETSAT	54884	broad.mit.edu	37	chr2	85571154	85571154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggaacagtttcaggaCcactgacatagaggcttcca	11	10	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85571154	A	A	85571154	3	1	136	1	0	0	0	0	1	0	0	0	13346	507	18	3	343	3	RETSAT	2	85571154	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	4762197	85571154	157628219	65	120726											
NPHP1	4867	broad.mit.edu	37	chr2	110962359	110962359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgttacaacctgggaagGtaagtaggttgggggcaagc	18	6	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110962359	T	T	110962359	1	4	136	0	1	0	0	0	0	0	0	0	10674	1276	44	3		3	NPHP1	2	110962359	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	25391205	110962359	132237014	66	120727											
IL1F10	84639	broad.mit.edu	37	chr2	113832689	113832689	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagggctaacacctccatCagcactctcattctgcagcc	6	17	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113832689	T	T	113832689	1	4	136	0	1	0	0	0	0	0	0	0	7722	841	29	4		4	IL1F10	2	113832689	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	2870330	113832689	129366684	67	120728											
IL1RN	3557	broad.mit.edu	37	chr2	113887244	113887244	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaatgtcaatttagaaggtGagtggttgccaggaaagcca	12	6	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113887244	T	T	113887244	1	4	136	0	1	0	0	0	0	0	0	0	7735	1305	45	3		3	IL1RN	2	113887244	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	54555	113887244	129312129	68	120729											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204548	125204548	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctgcacctcctcggcCccttgcttcaatgaacgcag	7	18	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125204548	T	T	125204548	1	4	136	0	1	0	0	0	0	0	0	0	3682	638	22	4		4	CNTNAP5	2	125204548	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	11317304	125204548	117994825	69	120730											
BIN1	274	broad.mit.edu	37	chr2	127826709	127826709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcgggcaggagacccCagctccacaggaacccttga	14	14	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127826709	A	A	127826709	1	1	136	0	1	0	0	0	0	0	0	0	1438	609	21	2		2	BIN1	2	127826709	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	2622161	127826709	115372664	70	120731											
FAM123C	205147	broad.mit.edu	37	chr2	131519874	131519874	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcagctggaccccaaagggGgacccgcagccctctgtgga	14	15	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131519874	C	C	131519874	3	2	136	1	0	0	0	0	1	0	0	0	5470	1233	43	4	231	4	FAM123C	2	131519874	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	3693165	131519874	111679499	71	120732											
LCT	3938	broad.mit.edu	37	chr2	136566318	136566318	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcagaagacgtcggccGtcgccctgatgaacctcttc	12	13	1	5	rs148317168		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136566318	C	C	136566318	3	2	136	1	0	0	0	0	1	0	0	0	8765	1145	40	4	2224	4	LCT	2	136566318	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	5046444	136566318	106633055	72	120733											
LRP1B	53353	broad.mit.edu	37	chr2	141751656	141751656	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacagtgtctgtttttgcagCgaaactctccagctttacat	7	10	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141751656	G	G	141751656	3	3	136	1	0	0	0	0	1	0	0	0	9042	768	27	4	11551	4	LRP1B	2	141751656	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	5185338	141751656	101447717	73	120734											
ORC4L	5000	broad.mit.edu	37	chr2	148715893	148715893	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatctccaactacattttCcagatttaactgccttgtga	4	10	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148715893	A	A	148715893	4	1	136	1	0	0	0	0	0	1	0	0	11358	864	30	3	985	3	ORC4L	2	148715893	Nonsense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	6964237	148715893	94483480	74	120735											
NEB	4703	broad.mit.edu	37	chr2	152548754	152548754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagccctcctacccgaaaGgtaaccgtggcttttcgaac	9	13	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152548754	T	T	152548754	1	4	136	0	1	0	0	0	0	0	0	0	10397	1015	35	2		2	NEB	2	152548754	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	3832861	152548754	90650619	75	120736											
TANC1	85461	broad.mit.edu	37	chr2	160006850	160006850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagcatcctgtgtaagccGtgctaactcctccttccatt	7	14	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160006850	T	T	160006850	1	4	136	0	1	0	0	0	0	0	0	0	15663	1160	40	3		3	TANC1	2	160006850	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	7458096	160006850	83192523	76	120737											
CHRNA1	1134	broad.mit.edu	37	chr2	175624091	175624091	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacattggttgtcacgatctGatttacttcatcctggaaaa	7	9	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175624091	A	A	175624091	4	1	136	1	0	0	0	0	0	1	0	0	3412	1299	45	4	1278	4	CHRNA1	2	175624091	Nonsense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	15617241	175624091	67575282	77	120738											
TTC30B	150737	broad.mit.edu	37	chr2	178417000	178417000	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatactgtccctccttgtaGagcaaacaacccaggttgat	7	12	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178417000	C	C	178417000	2	2	136	1	0	0	0	0	0	0	0	1	16825	929	33	4		4	TTC30B	2	178417000	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	2792909	178417000	64782373	78	120739											
TTN	7273	broad.mit.edu	37	chr2	179650354	179650354	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtaacttcttacctcatatCcatgttctgtcttaggaaca	5	10	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179650354	G	G	179650354	3	3	136	1	0	0	0	0	1	0	0	0	16861	855	30	4	108894	4	TTN	2	179650354	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1233354	179650354	63549019	79	120740											
ICA1L	130026	broad.mit.edu	37	chr2	203686132	203686132	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcatccatcattttgCcagcttgagttgcatcccgt	9	12	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203686132	T	T	203686132	3	4	136	1	0	0	0	0	1	0	0	0	7548	739	26	4	1180	4	ICA1L	2	203686132	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	24035778	203686132	39513241	80	120741											
KLF7	8609	broad.mit.edu	37	chr2	207988370	207988370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgtccctacctggggCctcccgcctgtctatcacct	7	17	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207988370	A	A	207988370	1	1	136	0	1	0	0	0	0	0	0	0	8422	754	26	3		3	KLF7	2	207988370	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	4302238	207988370	35211003	81	120742											
CPS1	1373	broad.mit.edu	37	chr2	211459298	211459298	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccattacatcagtcttaCcgaagccagcactagttgca	6	14	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211459298	T	T	211459298	3	4	136	1	0	0	0	0	1	0	0	0	3855	507	18	4	1299	4	CPS1	2	211459298	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	3470928	211459298	31740075	82	120743											
VIL1	7429	broad.mit.edu	37	chr2	219296603	219296603	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtggaacaggtgaagttcGatgccacatccatgcatgtc	11	9	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219296603	A	A	219296603	3	1	136	1	0	0	0	0	1	0	0	0	17291	1058	37	4	1164	4	VIL1	2	219296603	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	7837305	219296603	23902770	83	120744											
MOGAT1	116255	broad.mit.edu	37	chr2	223559263	223559263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgacccatgggtaagtgGctttttgtataaagtagggg	13	5	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223559263	T	T	223559263	1	4	136	0	1	0	0	0	0	0	0	0	9788	1218	42	3		3	MOGAT1	2	223559263	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	4262660	223559263	19640110	84	120745											
NGEF	25791	broad.mit.edu	37	chr2	233785096	233785096	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccttgagtgggggttactGagcaggcagatctggggcag	17	7	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233785096	A	A	233785096	2	1	136	1	0	0	0	0	0	0	0	1	10489	1277	45	4		4	NGEF	2	233785096	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	10225833	233785096	9414277	85	120746											
UGT1A5	54579	broad.mit.edu	37	chr2	234630445	234630445	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcattttaaagcacatGcagcaaaaatccagcaccct	5	13	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234630445	C	C	234630445	1	2	136	0	1	0	0	0	0	0	0	0	17074	1334	46	4		4	UGT1A5	2	234630445	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	845349	234630445	8568928	86	120747											
TRPM8	79054	broad.mit.edu	37	chr2	234878660	234878660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgtgtctttaatatctgGggcagaatgtggatttgtta	13	3	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234878660	T	T	234878660	1	4	136	0	1	0	0	0	0	0	0	0	16717	1247	43	2		2	TRPM8	2	234878660	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	248215	234878660	8320713	87	120748											
ANO7	50636	broad.mit.edu	37	chr2	242149087	242149087	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccctccgctcacgcctccatCctcctgcaccatgtggggtg	9	19	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242149087	G	G	242149087	1	3	136	0	1	0	0	0	0	0	0	0	702	870	30	4		4	ANO7	2	242149087	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	7270427	242149087	1050286	88	120749											
NEK10	152110	broad.mit.edu	37	chr3	27157393	27157393	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaacatctgatgacctcaaTtcatctttcacaattgaagg	5	10	5	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27157393	C	C	27157393	1	2	136	0	1	0	0	0	0	0	0	0	10417	1508	52	5		5	NEK10	3	27157393	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08		27157393	170865037	89	120750											
CLASP2	23122	broad.mit.edu	37	chr3	33586292	33586292	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataacattgtaaactctggGgtattgagttcaaataatga	8	4	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33586292	A	A	33586292	2	1	136	1	0	0	0	0	0	0	0	1	3486	1219	43	4		4	CLASP2	3	33586292	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	6428899	33586292	164436138	90	120751											
SLC22A13	9390	broad.mit.edu	37	chr3	38315685	38315685	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgagctcctgccctgaagGgtttgtagtgggacaggtgg	16	8	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38315685	C	C	38315685	1	2	136	0	1	0	0	0	0	0	0	0	14557	1247	43	4		4	SLC22A13	3	38315685	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	4729393	38315685	159706745	91	120752											
TTC21A	199223	broad.mit.edu	37	chr3	39172086	39172086	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccttttcactttaggctAtgttctggaggggcacactg	12	9	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39172086	T	T	39172086	1	4	136	0	1	0	0	0	0	0	0	0	16813	464	16	5		5	TTC21A	3	39172086	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	856401	39172086	158850344	92	120753											
ATRIP	84126	broad.mit.edu	37	chr3	48501913	48501913	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcttcagcacctggtgtGccacagcggagcagtcgtct	11	13	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48501913	A	A	48501913	3	1	136	1	0	0	0	0	1	0	0	0	1209	1319	46	4	1490	4	ATRIP	3	48501913	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	9329827	48501913	149520517	93	120754											
CELSR3	1951	broad.mit.edu	37	chr3	48685348	48685348	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatcccaggcatcctggcctCgaaagaggttgctatggtag	13	10	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48685348	T	T	48685348	3	4	136	1	0	0	0	0	1	0	0	0	3253	884	31	4	2947	4	CELSR3	3	48685348	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	183435	48685348	149337082	94	120755											
TLR9	54106	broad.mit.edu	37	chr3	52257313	52257313	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggtaattgaaggacaggTtaagcttgcgcagctgtgtt	13	5	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52257313	G	G	52257313	3	3	136	1	0	0	0	0	1	0	0	0	16081	1725	60	5	2083	5	TLR9	3	52257313	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	3571965	52257313	145765117	95	120756											
ROBO1	6091	broad.mit.edu	37	chr3	79639080	79639080	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctttgtcccttccttgcaTtacaaccagccagtgacaga	6	13	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79639080	A	A	79639080	1	1	136	0	1	0	0	0	0	0	0	0	13624	1508	52	5		5	ROBO1	3	79639080	5'UTR	SNP	T	TCGA-49-4494-01A-01D-1265-08	27381767	79639080	118383350	96	120757											
PROS1	5627	broad.mit.edu	37	chr3	93624636	93624636	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgctcttacctttacaaTctttcttatttgaaagcata	3	10	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93624636	A	A	93624636	3	1	136	1	0	0	0	0	1	0	0	0	12664	1435	50	5	1477	5	PROS1	3	93624636	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	13985556	93624636	104397794	97	120758											
EPHA6	285220	broad.mit.edu	37	chr3	96706352	96706352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattgtaacagcatcccatGggtcttggggacttgcaaag	13	8	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96706352	T	T	96706352	3	4	136	1	0	0	0	0	1	0	0	0	5213	1357	47	2	639	2	EPHA6	3	96706352	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	3081716	96706352	101316078	98	120759											
SENP7	57337	broad.mit.edu	37	chr3	101047372	101047372	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagcagctttcaaggagtcTagtataagaatacatggcct	10	7	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101047372	A	A	101047372	2	1	136	1	0	0	0	0	0	0	0	1	14164	1509	53	5		5	SENP7	3	101047372	Silent	SNP	T	TCGA-49-4494-01A-01D-1265-08	4341020	101047372	96975058	99	120760											
WDR52	55779	broad.mit.edu	37	chr3	113081309	113081309	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccgtattttttgcattcaTagaaaaggtctgtcttagag	9	6	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113081309	C	C	113081309	1	2	136	0	1	0	0	0	0	0	0	0	17431	1421	49	5		5	WDR52	3	113081309	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	12033937	113081309	84941121	100	120761											
QTRTD1	79691	broad.mit.edu	37	chr3	113795815	113795815	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcggttaggacacaggcTggcctcaagggatgcaggga	16	8	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113795815	G	G	113795815	1	3	136	0	1	0	0	0	0	0	0	0	12994	1595	55	5		5	QTRTD1	3	113795815	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	714506	113795815	84226615	101	120762											
CASR	846	broad.mit.edu	37	chr3	122002643	122002643	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggacggagccctttgggatCgcactcaccctctttgccgt	11	14	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122002643	T	T	122002643	2	4	136	1	0	0	0	0	0	0	0	1	2708	874	31	4		4	CASR	3	122002643	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	8206828	122002643	76019787	102	120763											
MCM2	4171	broad.mit.edu	37	chr3	127325430	127325430	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccctggctcacggcttcTgatgcaccctctgcctccgc	8	19	4	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127325430	A	A	127325430	1	1	136	0	1	0	0	0	0	0	0	0	9479	1595	55	5		5	MCM2	3	127325430	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	5322787	127325430	70697000	103	120764											
CCDC48	79825	broad.mit.edu	37	chr3	128757593	128757593	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggagctgcctagaagccCgtaggggccaccagttccca	13	14	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128757593	T	T	128757593	1	4	136	0	1	0	0	0	0	0	0	0	2847	667	23	4		4	CCDC48	3	128757593	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1432163	128757593	69264837	104	120765											
CPNE4	131034	broad.mit.edu	37	chr3	131895293	131895293	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcctgatctagagggtcgGacccacatctttaagattca	9	10	3	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131895293	T	T	131895293	1	4	136	0	1	0	0	0	0	0	0	0	3846	1189	41	3		3	CPNE4	3	131895293	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	3137700	131895293	66127137	105	120766											
PCOLCE2	26577	broad.mit.edu	37	chr3	142548567	142548567	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgtggtggtgacaggctGttctgtagttgtaggcagtt	16	4	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142548567	A	A	142548567	4	1	136	1	0	0	0	0	0	1	0	0	11689	1386	48	4	431	4	PCOLCE2	3	142548567	Nonsense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	10653274	142548567	55473863	106	120767											
C3orf58	205428	broad.mit.edu	37	chr3	143704330	143704330	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgaaaggatctgaggataGacctaggatattttcatcag	10	6	3	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143704330	T	T	143704330	1	4	136	0	1	0	0	0	0	0	0	0	2258	957	33	3		3	C3orf58	3	143704330	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1155763	143704330	54318100	107	120768											
TM4SF4	7104	broad.mit.edu	37	chr3	149205327	149205327	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtagtcaccatgttcaAcagcaggtggattaggtttg	11	7	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149205327	G	G	149205327	1	3	136	0	1	0	0	0	0	0	0	0	16093	58	2	5		5	TM4SF4	3	149205327	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	5500997	149205327	48817103	108	120769											
MED12L	116931	broad.mit.edu	37	chr3	151127077	151127077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgctgcgcaagcacggcCctcccctcagctccctcagt	8	19	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151127077	A	A	151127077	3	1	136	1	0	0	0	0	1	0	0	0	9522	623	22	2	5912	2	MED12L	3	151127077	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1921750	151127077	46895353	109	120770											
SI	6476	broad.mit.edu	37	chr3	164772952	164772952	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataagtctatggtcattgacCaaaaccattggtttaaaata	6	6	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164772952	G	G	164772952	1	3	136	0	1	0	0	0	0	0	0	0	14410	609	21	4		4	SI	3	164772952	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	13645875	164772952	33249478	110	120771											
FNDC3B	64778	broad.mit.edu	37	chr3	171944780	171944780	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctactcactatggacactgtCgttgctccaacagaatatat	6	11	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171944780	T	T	171944780	1	4	136	0	1	0	0	0	0	0	0	0	6028	899	31	4		4	FNDC3B	3	171944780	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	7171828	171944780	26077650	111	120772											
MCF2L2	23101	broad.mit.edu	37	chr3	182897375	182897375	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcacactcacgtttcctcctCatcgcgttcttctttttctc	3	16	6	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182897375	T	T	182897375	3	4	136	1	0	0	0	0	1	0	0	0	9473	835	29	4	141	4	MCF2L2	3	182897375	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	10952595	182897375	15125055	112	120773											
ABCC5	10057	broad.mit.edu	37	chr3	183696103	183696103	+	Intron	DEL	T	-	-													catcatctccatatgtggtaTtttttttttgtttgtttgtt					rs67116575		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	183696103	-	-	183696103	6	5	136	0	1	1	0	1	0	0	0	0	56	1508	52	0		0	ABCC5	3	183696103	Intron	DEL	T	TCGA-49-4494-01A-01D-1265-08	798728	183696103	14326327	113	120774											
TNK2	10188	broad.mit.edu	37	chr3	195591098	195591098	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcacagttaaacagtttaCagaaggttcagcggggcagg	13	8	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195591098	T	T	195591098	1	4	136	0	1	0	0	0	0	0	0	0	16441	493	17	4		4	TNK2	3	195591098	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	11894995	195591098	2431332	114	120775											
LMLN	89782	broad.mit.edu	37	chr3	197707307	197707307	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgttggtgctctggccacCgagagatgcagccatgaaaa	12	10	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197707307	T	T	197707307	2	4	136	1	0	0	0	0	0	0	0	1	8921	639	23	4		4	LMLN	3	197707307	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	2116209	197707307	315123	115	120776											
TECRL	253017	broad.mit.edu	37	chr4	65274940	65274940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagttggtcttagagggcCcgctgagagtacaagttttg	15	6	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65274940	A	A	65274940	3	1	136	1	0	0	0	0	1	0	0	0	15868	623	22	2	1009	2	TECRL	4	65274940	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08		65274940	125879336	116	120777											
EPHA5	2044	broad.mit.edu	37	chr4	66286339	66286339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggccctaaaagtaaacCtgttatgtttattacgtata	6	6	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66286339	A	A	66286339	1	1	136	0	1	0	0	0	0	0	0	0	5212	696	24	2		2	EPHA5	4	66286339	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1011399	66286339	124867937	117	120778											
C4orf22	255119	broad.mit.edu	37	chr4	81309662	81309662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgttcccgcttgtggGtcataaacactggcagcgag	13	11	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81309662	T	T	81309662	1	4	136	0	1	0	0	0	0	0	0	0	2278	1276	44	3		3	C4orf22	4	81309662	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	15023323	81309662	109844614	118	120779											
ABCG2	9429	broad.mit.edu	37	chr4	89034842	89034842	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaaataggccaggcaCggcggctcatgactgtaatc	11	9	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89034842	T	T	89034842	1	4	136	0	1	0	0	0	0	0	0	0	69	551	19	4		4	ABCG2	4	89034842	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	7725180	89034842	102119434	119	120780											
UNC5C	8633	broad.mit.edu	37	chr4	96106043	96106043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccctcaaatatgtctgtGtttctcaaaaatcctaaata	3	9	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96106043	T	T	96106043	1	4	136	0	1	0	0	0	0	0	0	0	17119	1392	48	3		3	UNC5C	4	96106043	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	7071201	96106043	95048233	120	120781											
ADH7	131	broad.mit.edu	37	chr4	100340244	100340244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctacaaccacgctggtcCcatagttcatgtggcaggat	9	13	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100340244	A	A	100340244	3	1	136	1	0	0	0	0	1	0	0	0	313	623	22	2	276	2	ADH7	4	100340244	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	4234201	100340244	90814032	121	120782											
KIAA1109	84162	broad.mit.edu	37	chr4	123130528	123130528	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtgacacaggccaggcacAgtggctcacgcctgtaatcc	11	13	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123130528	T	T	123130528	1	4	136	0	1	0	0	0	0	0	0	0	8278	203	7	5		5	KIAA1109	4	123130528	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	22790284	123130528	68023748	122	120783											
SH3RF1	57630	broad.mit.edu	37	chr4	170017740	170017740	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgtaatgtgcctttgaacCagccatcctctcgtttttta	7	10	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170017740	G	G	170017740	3	3	136	1	0	0	0	0	1	0	0	0	14371	595	21	4	73	4	SH3RF1	4	170017740	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	46887212	170017740	21136536	123	120784											
WDR17	116966	broad.mit.edu	37	chr4	177037184	177037184	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatttttatttcaacaAgcactatcaatattattagt	2	5	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177037184	T	T	177037184	1	4	136	0	1	0	0	0	0	0	0	0	17404	87	3	5		5	WDR17	4	177037184	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	7019444	177037184	14117092	124	120785											
VEGFC	7424	broad.mit.edu	37	chr4	177608435	177608435	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttccaggatttaggggttGatttctggggcaggttcttt	13	5	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608435	A	A	177608435	4	1	136	1	0	0	0	0	0	1	0	0	17279	1299	45	4	219	4	VEGFC	4	177608435	Nonsense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	571251	177608435	13545841	125	120786											
CCDC111	201973	broad.mit.edu	37	chr4	185599618	185599618	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtgaatggcattgtataTtactaaaatgtaaatcatct	6	5	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185599618	G	G	185599618	1	3	136	0	1	0	0	0	0	0	0	0	2774	1508	52	5		5	CCDC111	4	185599618	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	7991183	185599618	5554658	126	120787											
TRIP13	9319	broad.mit.edu	37	chr5	900692	900692	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgccttttcccagaatGccctgttatttgaagaggaa	10	9	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	900692	C	C	900692	1	2	136	0	1	0	0	0	0	0	0	0	16682	1334	46	4		4	TRIP13	5	900692	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08		900692	180014568	127	120788											
FAM105B	90268	broad.mit.edu	37	chr5	14693081	14693081	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgacccacccaaggactggcCagtggtaacgctcattgctg	11	14	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14693081	T	T	14693081	3	4	136	1	0	0	0	0	1	0	0	0	5434	594	21	4	1009	4	FAM105B	5	14693081	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	13792389	14693081	166222179	128	120789											
SLC45A2	51151	broad.mit.edu	37	chr5	33951506	33951506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaggatgctttatatgGtcctttttaaggtgatagtt	9	3	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33951506	T	T	33951506	1	4	136	0	1	0	0	0	0	0	0	0	14755	1276	44	3		3	SLC45A2	5	33951506	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	19258425	33951506	146963754	129	120790											
SLC45A2	51151	broad.mit.edu	37	chr5	33984697	33984697	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgctacccatggccactgGgagaggaaccttcctgcgag	13	12	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33984697	A	A	33984697	1	1	136	0	1	0	0	0	0	0	0	0	14755	1247	43	4		4	SLC45A2	5	33984697	5'UTR	SNP	G	TCGA-49-4494-01A-01D-1265-08	33191	33984697	146930563	130	120791											
GHR	2690	broad.mit.edu	37	chr5	42719627	42719627	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaccttttttgggggagTgacaggatggggtatggatt	15	3	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42719627	A	A	42719627	1	1	136	0	1	0	0	0	0	0	0	0	6435	1711	59	5		5	GHR	5	42719627	3'UTR	SNP	T	TCGA-49-4494-01A-01D-1265-08	8734930	42719627	138195633	131	120792											
GZMK	3003	broad.mit.edu	37	chr5	54320167	54320167	+	Frame_Shift_Del	DEL	C	-	-													taaaatgactaagttttcttCcttttctctgtttttcctaa							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54320167	-	-	54320167	7	5	136	1	0	1	0	1	0	0	0	0	6983	855	30	0	19	0	GZMK	5	54320167	Frame_Shift_Del	DEL	C	TCGA-49-4494-01A-01D-1265-08	11600540	54320167	126595093	132	120793											
HTR1A	3350	broad.mit.edu	37	chr5	63256504	63256504	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggtgcccatgatgatgCccagcgtcttcactgtcttc	10	12	3	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63256504	T	T	63256504	3	4	136	1	0	0	0	0	1	0	0	0	7506	739	26	4	228	4	HTR1A	5	63256504	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	8936337	63256504	117658756	133	120794											
CWC27	10283	broad.mit.edu	37	chr5	64081315	64081315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaatttgataggttacagGggatacagtatataacatgt	9	3	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64081315	T	T	64081315	3	4	136	1	0	0	0	0	1	0	0	0	4103	1232	43	2	422	2	CWC27	5	64081315	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	824811	64081315	116833945	134	120795											
SLC30A5	64924	broad.mit.edu	37	chr5	68411719	68411719	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgtgaactttatacatgTatagtcttgacaattctttt	6	5	2	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68411719	C	C	68411719	1	2	136	0	1	0	0	0	0	0	0	0	14672	1653	57	5		5	SLC30A5	5	68411719	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	4330404	68411719	112503541	135	120796											
F2R	2149	broad.mit.edu	37	chr5	76028404	76028404	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttgtagtcagcctcccActaaacatcatggccatcgt	8	12	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76028404	T	T	76028404	2	4	136	1	0	0	0	0	0	0	0	1	5386	146	6	5		5	F2R	5	76028404	Silent	SNP	A	TCGA-49-4494-01A-01D-1265-08	7616685	76028404	104886856	136	120797											
AP3B1	8546	broad.mit.edu	37	chr5	77590184	77590184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagacctcagggcgaccCcgctcctctccaggaagccc	10	19	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77590184	A	A	77590184	1	1	136	0	1	0	0	0	0	0	0	0	746	638	22	2		2	AP3B1	5	77590184	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1561780	77590184	103325076	137	120798											
ACOT12	134526	broad.mit.edu	37	chr5	80667542	80667542	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagtgagcaccaacagGcagatgtttgaaaaggtgcc	13	7	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80667542	A	A	80667542	1	1	136	0	1	0	0	0	0	0	0	0	150	1218	42	4		4	ACOT12	5	80667542	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	3077358	80667542	100247718	138	120799											
PPIP5K2	23262	broad.mit.edu	37	chr5	102522089	102522089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagcgcacctaacctacagGattatgctcgtactcatcgt	7	13	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102522089	T	T	102522089	3	4	136	1	0	0	0	0	1	0	0	0	12434	1174	41	3	3340	3	PPIP5K2	5	102522089	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	21854547	102522089	78393171	139	120800											
PPIC	5480	broad.mit.edu	37	chr5	122359468	122359468	+	3'UTR	DEL	A	-	-													atagaatacaaaaagaaagtAaaaaaaaaaaagcaaataat					rs71758463		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122359468	-	-	122359468	6	5	136	0	1	1	0	1	0	0	0	0	12421	377	13	0		0	PPIC	5	122359468	3'UTR	DEL	A	TCGA-49-4494-01A-01D-1265-08	19837379	122359468	58555792	140	120801											
FBN2	2201	broad.mit.edu	37	chr5	127670326	127670326	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggcaggtaaccgctctaaGagatgccagagaacaaatga	12	8	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127670326	T	T	127670326	1	4	136	0	1	0	0	0	0	0	0	0	5760	957	33	3		3	FBN2	5	127670326	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	5310858	127670326	53244934	141	120802											
FNIP1	96459	broad.mit.edu	37	chr5	131008460	131008460	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggcataacgatggcttcAtcttctccattttctaaaag	6	11	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131008460	G	G	131008460	2	3	136	1	0	0	0	0	0	0	0	1	6033	214	8	5		5	FNIP1	5	131008460	Silent	SNP	A	TCGA-49-4494-01A-01D-1265-08	3338134	131008460	49906800	142	120803											
ACSL6	23305	broad.mit.edu	37	chr5	131325010	131325010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttttttcttttgtcctgGgccctacaaacagtgaaagc	8	10	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131325010	T	T	131325010	1	4	136	0	1	0	0	0	0	0	0	0	181	1247	43	2		2	ACSL6	5	131325010	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	316550	131325010	49590250	143	120804											
P4HA2	8974	broad.mit.edu	37	chr5	131528655	131528655	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatacaaaggtgtctgtcaCgttgacatgggctgaaggac	12	8	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131528655	T	T	131528655	1	4	136	0	1	0	0	0	0	0	0	0	11451	551	19	4		4	P4HA2	5	131528655	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	203645	131528655	49386605	144	120805											
SLC22A4	6583	broad.mit.edu	37	chr5	131663013	131663013	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgatatcccagagaagaTttagagaggctgaagatatc	12	6	0	6			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131663013	C	C	131663013	3	2	136	1	0	0	0	0	1	0	0	0	14570	1493	52	5	886	5	SLC22A4	5	131663013	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	134358	131663013	49252247	145	120806											
PCDHA3	56145	broad.mit.edu	37	chr5	140182645	140182645	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accggcggtgcgcgcatcccGtttcgcgtggggctgtacac	15	14	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140182645	A	A	140182645	2	1	136	1	0	0	0	0	0	0	0	1	11619	1132	40	4		4	PCDHA3	5	140182645	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	8519632	140182645	40732615	146	120807											
PCDHB4	56131	broad.mit.edu	37	chr5	140503215	140503215	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttgagcagcgaggcgctGgtgcgcgtgctggtgctgga	19	9	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140503215	A	A	140503215	2	1	136	1	0	0	0	0	0	0	0	1	11638	1335	47	4		4	PCDHB4	5	140503215	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	320570	140503215	40412045	147	120808											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711965	140711965	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgccctccccacagatggtTctaccggcgtggagctggcg	13	16	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140711965	A	A	140711965	3	1	136	1	0	0	0	0	1	0	0	0	11644	1783	62	5	1716	5	PCDHGA1	5	140711965	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	208750	140711965	40203295	148	120809											
PCDHGB5	56101	broad.mit.edu	37	chr5	140778496	140778496	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttgcaagtgtcagccactGaccaagacgagggcatcaac	11	11	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140778496	T	T	140778496	3	4	136	1	0	0	0	0	1	0	0	0	11660	1290	45	3	804	3	PCDHGB5	5	140778496	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	66531	140778496	40136764	149	120810											
TCERG1	10915	broad.mit.edu	37	chr5	145838957	145838957	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagacatgaacaagtaggGgactacatttcatattgatc	9	6	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145838957	A	A	145838957	1	1	136	0	1	0	0	0	0	0	0	0	15807	1247	43	4		4	TCERG1	5	145838957	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	5060461	145838957	35076303	150	120811											
JAKMIP2	9832	broad.mit.edu	37	chr5	147024598	147024598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttgtgtcttgcgtttgGgggacgtgggggcaggggag	21	4	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147024598	T	T	147024598	1	4	136	0	1	0	0	0	0	0	0	0	8011	1247	43	2		2	JAKMIP2	5	147024598	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1185641	147024598	33890662	151	120812											
LARP1	23367	broad.mit.edu	37	chr5	154181956	154181956	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacctgagtattcccagatCaaggtgaggcttggacatag	12	8	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154181956	G	G	154181956	3	3	136	1	0	0	0	0	1	0	0	0	8700	816	29	4	1917	4	LARP1	5	154181956	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	7157358	154181956	26733304	152	120813											
ZNF454	285676	broad.mit.edu	37	chr5	178392687	178392687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgggaccaatcagcactaGcccaacatcagagaattcat	7	12	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178392687	T	T	178392687	3	4	136	1	0	0	0	0	1	0	0	0	18050	971	34	3	1296	3	ZNF454	5	178392687	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	24210731	178392687	2522573	153	120814											
ADAMTS2	9509	broad.mit.edu	37	chr5	178567148	178567148	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctggccccactctggggcAcagggggagctcaccctcct	12	17	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178567148	T	T	178567148	1	4	136	0	1	0	0	0	0	0	0	0	265	174	6	5		5	ADAMTS2	5	178567148	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	174461	178567148	2348112	154	120815											
PHACTR1	221692	broad.mit.edu	37	chr6	13283719	13283719	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccgcttcagtgactaCgtggaggtggctgacgctca	12	12	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13283719	T	T	13283719	2	4	136	1	0	0	0	0	0	0	0	1	11904	547	19	4		4	PHACTR1	6	13283719	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08		13283719	157831348	155	120816											
KIF13A	63971	broad.mit.edu	37	chr6	17849677	17849677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatactctttcgctacccGccaggtctaccaagctgacc	7	15	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17849677	T	T	17849677	3	4	136	1	0	0	0	0	1	0	0	0	8344	1087	38	3	4805	3	KIF13A	6	17849677	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	4565958	17849677	153265390	156	120817											
SLC17A1	6568	broad.mit.edu	37	chr6	25811563	25811563	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaatcatcatgttgtgcAcaataaatatatacaatatt	3	5	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25811563	T	T	25811563	1	4	136	0	1	0	0	0	0	0	0	0	14529	174	6	5		5	SLC17A1	6	25811563	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	7961886	25811563	145303504	157	120818											
SLC17A2	10246	broad.mit.edu	37	chr6	25921560	25921560	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgctaaatatccacttggGatcagagtcagtattatccc	7	11	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25921560	T	T	25921560	2	4	136	1	0	0	0	0	0	0	0	1	14530	1164	41	3		3	SLC17A2	6	25921560	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	109997	25921560	145193507	158	120819											
TRIM27	5987	broad.mit.edu	37	chr6	28872311	28872311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcatggagagcccaagaCacagggaaacagattgaacc	12	9	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28872311	A	A	28872311	3	1	136	1	0	0	0	0	1	0	0	0	16625	478	17	3	467	3	TRIM27	6	28872311	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2950751	28872311	142242756	159	120820											
HLA-G	3135	broad.mit.edu	37	chr6	29974550	29974550	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgggaggagggtcgggCgggtctcagcccctcctcgc	18	15	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29974550	T	T	29974550	1	4	136	0	1	0	0	0	0	0	0	0	7279	783	27	4		4	HLA-G	6	29974550	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1102239	29974550	141140517	160	120821											
BTNL2	56244	broad.mit.edu	37	chr6	32370728	32370728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctgggaggctgatgacCgaccccttctcctcagtgag	12	13	2	4	rs79379254		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32370728	A	A	32370728	2	1	136	1	0	0	0	0	0	0	0	1	1575	639	23	1		1	BTNL2	6	32370728	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	2396178	32370728	138744339	161	120822											
TRERF1	55809	broad.mit.edu	37	chr6	42214379	42214379	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaaaatacaactacagagCaagtgatataatacatatca	4	7	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42214379	T	T	42214379	1	4	136	0	1	0	0	0	0	0	0	0	16599	725	25	4		4	TRERF1	6	42214379	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	9843651	42214379	128900688	162	120823											
SPACA1	81833	broad.mit.edu	37	chr6	88773957	88773957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggtgaatagtggaatgCatcatcacccttgattgaca	11	7	2	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88773957	A	A	88773957	1	1	136	0	1	0	0	0	0	0	0	0	15086	725	25	3		3	SPACA1	6	88773957	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	46559578	88773957	82341110	163	120824											
TMEM181	57583	broad.mit.edu	37	chr6	159032142	159032142	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtcctttggtccccaagGggctcctcagtgggtttctc	11	13	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159032142	A	A	159032142	1	1	136	0	1	0	0	0	0	0	0	0	16223	1247	43	4		4	TMEM181	6	159032142	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	70258185	159032142	12082925	164	120825											
LPA	4018	broad.mit.edu	37	chr6	161071502	161071502	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaccatggtagcaatccTggaccacatggctttgctca	8	13	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161071502	G	G	161071502	3	3	136	1	0	0	0	0	1	0	0	0	8990	1580	55	5	6197	5	LPA	6	161071502	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	2039360	161071502	10043565	165	120826											
TCP10	6953	broad.mit.edu	37	chr6	167791599	167791599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaaaagacaaaatgcggGgaaaatgttcatattttcaa	8	6	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167791599	T	T	167791599	1	4	136	0	1	0	0	0	0	0	0	0	15832	1247	43	2		2	TCP10	6	167791599	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6720097	167791599	3323468	166	120827											
IQCE	23288	broad.mit.edu	37	chr7	2629458	2629458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagactcagtttgccctGgttcagtgtctcttttctgg	11	10	4	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2629458	T	T	2629458	1	4	136	0	1	0	0	0	0	0	0	0	7876	1363	47	2		2	IQCE	7	2629458	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08		2629458	156509205	167	120828											
COL28A1	340267	broad.mit.edu	37	chr7	7477083	7477083	+	Missense_Mutation	SNP	C	T	T													ttccaaaagggcccataatgCccggttcacccttaaaaaga							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7477083	T	T	7477083	3	4	136	1	0	0	0	0	1	0	0	0	3718	739	26	4	1700	4	COL28A1	7	7477083	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	4847625	7477083	151661580	168	120829	526	2									
COL28A1	340267	broad.mit.edu	37	chr7	7477086	7477086	+	Missense_Mutation	SNP	G	A	A													caaaagggcccataatgcccGgttcacccttaaaaagagca							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7477086	A	A	7477086	3	1	136	1	0	0	0	0	1	0	0	0	3718	1116	39	4	1703	4	COL28A1	7	7477086	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	3	7477086	151661577	169	120830	526	2									
TMEM195	392636	broad.mit.edu	37	chr7	15426913	15426913	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgcaccacaggactgcatCtgactgggggaacatctttt	10	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15426913	G	G	15426913	1	3	136	0	1	0	0	0	0	0	0	0	16240	928	32	4		4	TMEM195	7	15426913	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	7949827	15426913	143711750	170	120831											
ABCB5	340273	broad.mit.edu	37	chr7	20778656	20778656	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccatcggagaaacgctcgTtttggctcctgaatattcca	10	11	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20778656	A	A	20778656	3	1	136	1	0	0	0	0	1	0	0	0	44	1725	60	5	3049	5	ABCB5	7	20778656	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	5351743	20778656	138360007	171	120832											
BMPER	168667	broad.mit.edu	37	chr7	34118587	34118587	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgctcctcccctgcctcGcccttccaggtgctggtgaa	10	17	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34118587	A	A	34118587	2	1	136	1	0	0	0	0	0	0	0	1	1474	1074	38	4		4	BMPER	7	34118587	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	13339931	34118587	125020076	172	120833											
ANLN	54443	broad.mit.edu	37	chr7	36478826	36478826	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgcaggtcccctttttatCttctttggaaggtcatattt	7	8	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36478826	A	A	36478826	3	1	136	1	0	0	0	0	1	0	0	0	694	913	32	3	2979	3	ANLN	7	36478826	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2360239	36478826	122659837	173	120834											
BLVRA	644	broad.mit.edu	37	chr7	43807071	43807071	+	Intron	DEL	C	-	-													tggaggcgcccttgggatatCcaataaggacagctgttttt							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43807071	-	-	43807071	6	5	136	0	1	1	0	1	0	0	0	0	1457	870	30	0		0	BLVRA	7	43807071	Intron	DEL	C	TCGA-49-4494-01A-01D-1265-08	7328245	43807071	115331592	174	120835											
URGCP	55665	broad.mit.edu	37	chr7	43917045	43917045	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagccctgtgacccagcGgacgggcatgctcagcgtgc	15	14	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43917045	A	A	43917045	3	1	136	1	0	0	0	0	1	0	0	0	17152	1116	39	4	782	4	URGCP	7	43917045	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	109974	43917045	115221618	175	120836											
POLM	27434	broad.mit.edu	37	chr7	44116039	44116039	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgctcccttccctctaggGagttgatgctgagggatcca	11	12	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44116039	T	T	44116039	1	4	136	0	1	0	0	0	0	0	0	0	12301	1189	41	3		3	POLM	7	44116039	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	198994	44116039	115022624	176	120837											
EGFR	1956	broad.mit.edu	37	chr7	55249071	55249071	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccgtgcagctcatcaCgcagctcatgcccttcggct	8	18	3	0	rs121434569		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55249071	T	T	55249071	3	4	136	1	0	0	0	0	1	0	0	0	5007	536	19	4	2711	4	EGFR	7	55249071	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	11133032	55249071	103889592	177	120838											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	136	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	10444	55259515	103879148	178	120839											
ZNF479	90827	broad.mit.edu	37	chr7	57194441	57194441	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccctggaaaacaaacaaAcaaaaccactcatgaacaca	4	12	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57194441	G	G	57194441	1	3	136	0	1	0	0	0	0	0	0	0	18060	58	2	5		5	ZNF479	7	57194441	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	1934926	57194441	101944222	179	120840											
ZNF680	340252	broad.mit.edu	37	chr7	63982254	63982254	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacattcatcacatttgtaaGgtttgtctccagtatgaatt	7	7	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63982254	A	A	63982254	3	1	136	1	0	0	0	0	1	0	0	0	18214	1000	35	4	718	4	ZNF680	7	63982254	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	6787813	63982254	95156409	180	120841											
FKBP6	8468	broad.mit.edu	37	chr7	72744332	72744332	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctggactgtgctgagtcaGacaagttttgtgctctctca	10	10	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72744332	T	T	72744332	3	4	136	1	0	0	0	0	1	0	0	0	5969	942	33	3	505	3	FKBP6	7	72744332	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	8762078	72744332	86394331	181	120842											
BCL7B	9275	broad.mit.edu	37	chr7	72952325	72952325	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggttcatcagcaacttccGaggagggcagggagggctct	16	9	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72952325	A	A	72952325	3	1	136	1	0	0	0	0	1	0	0	0	1384	1059	37	4	161	4	BCL7B	7	72952325	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	207993	72952325	86186338	182	120843											
CACNA2D1	781	broad.mit.edu	37	chr7	81667564	81667564	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttaaactgcaaaagattAaaaagtaaatatataaatga	5	3	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81667564	T	T	81667564	1	4	136	0	1	0	0	0	0	0	0	0	2574	377	13	5		5	CACNA2D1	7	81667564	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	8715239	81667564	77471099	183	120844											
RUNDC3B	154661	broad.mit.edu	37	chr7	87436744	87436744	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagttaactgcccatctcaCcaaccagtggccttctccag	7	15	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87436744	T	T	87436744	3	4	136	1	0	0	0	0	1	0	0	0	13856	507	18	4	1102	4	RUNDC3B	7	87436744	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	5769180	87436744	71701919	184	120845											
ADAM22	53616	broad.mit.edu	37	chr7	87780637	87780637	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatacatttgggggcaaagTaagtaaatagtgtggcttga	12	3	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87780637	G	G	87780637	5	3	136	1	0	0	0	0	0	0	1	0	244	1652	57	5	1761	5	ADAM22	7	87780637	Splice_Site	SNP	T	TCGA-49-4494-01A-01D-1265-08	343893	87780637	71358026	185	120846											
ZNF804B	219578	broad.mit.edu	37	chr7	88965549	88965549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctaataaatatactggtGtgactgattcaacagagacc	8	8	2	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88965549	T	T	88965549	3	4	136	1	0	0	0	0	1	0	0	0	18300	1377	48	3	3267	3	ZNF804B	7	88965549	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1184912	88965549	70173114	186	120847											
CCDC132	55610	broad.mit.edu	37	chr7	92979331	92979331	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagcacaacatatatgtaGatgcactattaaaggcaagt	7	8	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92979331	T	T	92979331	3	4	136	1	0	0	0	0	1	0	0	0	2793	942	33	3	2589	3	CCDC132	7	92979331	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	4013782	92979331	66159332	187	120848											
CALCR	799	broad.mit.edu	37	chr7	93108491	93108491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcagtcagatgaacttgGgcaaagaaattaggcatatg	11	5	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93108491	T	T	93108491	1	4	136	0	1	0	0	0	0	0	0	0	2605	1247	43	2		2	CALCR	7	93108491	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	129160	93108491	66030172	188	120849											
TRRAP	8295	broad.mit.edu	37	chr7	98519233	98519233	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttgaactcctgacgtcAggtgatctacccgccttagc	10	13	3	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98519233	T	T	98519233	1	4	136	0	1	0	0	0	0	0	0	0	16726	203	7	5		5	TRRAP	7	98519233	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	5410742	98519233	60619430	189	120850											
C7orf51	222950	broad.mit.edu	37	chr7	100086913	100086913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgggcgcagcagctggGgtcctccaccaccgcggctg	15	16	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100086913	T	T	100086913	2	4	136	1	0	0	0	0	0	0	0	1	2425	1219	43	2		2	C7orf51	7	100086913	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	1567680	100086913	59051750	190	120851											
MOSPD3	64598	broad.mit.edu	37	chr7	100212862	100212862	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcagggtcttgaggcaGccactgtgatgctcatacct	13	11	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100212862	A	A	100212862	1	1	136	0	1	0	0	0	0	0	0	0	9811	986	34	4		4	MOSPD3	7	100212862	3'UTR	SNP	G	TCGA-49-4494-01A-01D-1265-08	125949	100212862	58925801	191	120852											
MUC17	140453	broad.mit.edu	37	chr7	100675478	100675478	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttcatctcctacaactgctGaaggtcccagcctgtcaaac	7	14	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100675478	C	C	100675478	3	2	136	1	0	0	0	0	1	0	0	0	10068	1291	45	4	791	4	MUC17	7	100675478	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	462616	100675478	58463185	192	120853											
MUC17	140453	broad.mit.edu	37	chr7	100677522	100677522	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtagtcagttctgaggctaGaacactttcagcaactcctg	10	10	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100677522	C	C	100677522	3	2	136	1	0	0	0	0	1	0	0	0	10068	942	33	4	2835	4	MUC17	7	100677522	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	2044	100677522	58461141	193	120854											
RELN	5649	broad.mit.edu	37	chr7	103159823	103159823	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcaggttccaggtaatGcctccattgacagaatattc	9	9	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103159823	T	T	103159823	2	4	136	1	0	0	0	0	0	0	0	1	13328	1306	46	3		3	RELN	7	103159823	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	2482301	103159823	55978840	194	120855											
RELN	5649	broad.mit.edu	37	chr7	103205942	103205942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgctcatttcaaactGcaaaaaggtagatgctgaca	8	10	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103205942	T	T	103205942	3	4	136	1	0	0	0	0	1	0	0	0	13328	1328	46	3	5517	3	RELN	7	103205942	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	46119	103205942	55932721	195	120856											
RELN	5649	broad.mit.edu	37	chr7	103294513	103294513	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtggtctgaggtggtctAtttgccacacagactggcat	14	8	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103294513	G	G	103294513	1	3	136	0	1	0	0	0	0	0	0	0	13328	464	16	5		5	RELN	7	103294513	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	88571	103294513	55844150	196	120857											
ORC5L	5001	broad.mit.edu	37	chr7	103844634	103844634	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttacataggtctttccacTagcagtatgtccataaataa	6	8	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103844634	C	C	103844634	3	2	136	1	0	0	0	0	1	0	0	0	11359	1522	53	5	1336	5	ORC5L	7	103844634	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	550121	103844634	55294029	197	120858											
IFRD1	3475	broad.mit.edu	37	chr7	112115600	112115600	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaacttgaagactattttCtaatttctatttttttttct	3	6	3	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112115600	A	A	112115600	1	1	136	0	1	0	0	0	0	0	0	0	7623	928	32	3		3	IFRD1	7	112115600	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	8270966	112115600	47023063	198	120859											
FOXP2	93986	broad.mit.edu	37	chr7	114299555	114299555	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgcttaaagtaaggcttgGatgagaaagtgtcatctagt	11	4	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114299555	T	T	114299555	1	4	136	0	1	0	0	0	0	0	0	0	6087	1189	41	3		3	FOXP2	7	114299555	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	2183955	114299555	44839108	199	120860											
KCND2	3751	broad.mit.edu	37	chr7	119915822	119915822	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggtgccataatgggaaaTgggatggaggttgggtatgg	19	2	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119915822	C	C	119915822	1	2	136	0	1	0	0	0	0	0	0	0	8089	1479	51	5		5	KCND2	7	119915822	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	5616267	119915822	39222841	200	120861											
PTPRZ1	5803	broad.mit.edu	37	chr7	121674301	121674301	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgttgtttgaaagaatGtgtgttaaaatgatttacat	10	3	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121674301	C	C	121674301	1	2	136	0	1	0	0	0	0	0	0	0	12922	1392	48	4		4	PTPRZ1	7	121674301	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1758479	121674301	37464362	201	120862											
PTPRZ1	5803	broad.mit.edu	37	chr7	121674322	121674322	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttaaaatgatttacatAtaattttttacaggaagtgc	7	3	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121674322	G	G	121674322	1	3	136	0	1	0	0	0	0	0	0	0	12922	464	16	5		5	PTPRZ1	7	121674322	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	21	121674322	37464341	202	120863											
CPA2	1358	broad.mit.edu	37	chr7	129909536	129909536	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttggaaatcacccaccaccCcaggggagacagcccacgtc	9	16	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129909536	G	G	129909536	3	3	136	1	0	0	0	0	1	0	0	0	3822	623	22	4	191	4	CPA2	7	129909536	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	8235214	129909536	29229127	203	120864											
LRGUK	136332	broad.mit.edu	37	chr7	133811995	133811995	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagactgagaaaaagaaaaGtcaagtggagcgcccactgc	12	8	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133811995	T	T	133811995	1	4	136	0	1	0	0	0	0	0	0	0	9030	1044	36	3		3	LRGUK	7	133811995	5'Flank	SNP	G	TCGA-49-4494-01A-01D-1265-08	3902459	133811995	25326668	204	120865											
AKR1B15	441282	broad.mit.edu	37	chr7	134250071	134250071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacatctgaaggaacaaaCtccagacacaacatctttaa	5	11	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134250071	A	A	134250071	1	1	136	0	1	0	0	0	0	0	0	0	468	580	20	3		3	AKR1B15	7	134250071	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	438076	134250071	24888592	205	120866											
STRA8	346673	broad.mit.edu	37	chr7	134916565	134916565	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatgttcctgtggtggggaGggagtgtattttagggcaaa	16	4	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134916565	A	A	134916565	1	1	136	0	1	0	0	0	0	0	0	0	15441	1015	35	4		4	STRA8	7	134916565	5'Flank	SNP	G	TCGA-49-4494-01A-01D-1265-08	666494	134916565	24222098	206	120867											
PARP12	64761	broad.mit.edu	37	chr7	139746679	139746679	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagagacaagggacatatttCctacctttctattttgggat	8	8	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139746679	T	T	139746679	1	4	136	0	1	0	0	0	0	0	0	0	11551	870	30	4		4	PARP12	7	139746679	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	4830114	139746679	19391984	207	120868											
OR2A5	393046	broad.mit.edu	37	chr7	143748258	143748258	+	Frame_Shift_Del	DEL	C	-	-													gggactcttctttggcagcgCcattgtcatgtacatggccc							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143748258	-	-	143748258	7	5	136	1	0	1	0	1	0	0	0	0	11075	739	26	0	766	0	OR2A5	7	143748258	Frame_Shift_Del	DEL	C	TCGA-49-4494-01A-01D-1265-08	4001579	143748258	15390405	208	120869											
CNTNAP2	26047	broad.mit.edu	37	chr7	146817993	146817993	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcagcctctaggtgctGtaaatgaaagatcttctgct	9	8	4	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146817993	A	A	146817993	1	1	136	0	1	0	0	0	0	0	0	0	3679	1392	48	4		4	CNTNAP2	7	146817993	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	3069735	146817993	12320670	209	120870											
GIMAP8	155038	broad.mit.edu	37	chr7	150164352	150164352	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggagctccttcgcaaggTtgagtctttggtgaatacga	13	7	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150164352	C	C	150164352	3	2	136	1	0	0	0	0	1	0	0	0	6449	1725	60	5	568	5	GIMAP8	7	150164352	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	3346359	150164352	8974311	210	120871											
PRKAG2	51422	broad.mit.edu	37	chr7	151372540	151372540	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagtgtgtcggtgatgccAgtggaggcctggtcgggctc	17	9	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151372540	T	T	151372540	3	4	136	1	0	0	0	0	1	0	0	0	12607	188	7	5	1111	5	PRKAG2	7	151372540	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08	1208188	151372540	7766123	211	120872											
CSMD1	64478	broad.mit.edu	37	chr8	2944669	2944669	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtacatgccaagtgggtttCgtctacaggttgcattgctg	13	8	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2944669	G	G	2944669	3	3	136	1	0	0	0	0	1	0	0	0	3978	884	31	4	3358	4	CSMD1	8	2944669	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08		2944669	143419353	212	120873											
CSMD1	64478	broad.mit.edu	37	chr8	3265422	3265422	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgtgggcgtacttactGgtgtaagtgatgttgaaccc	13	7	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3265422	T	T	3265422	2	4	136	1	0	0	0	0	0	0	0	1	3978	1362	47	2		2	CSMD1	8	3265422	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	320753	3265422	143098600	213	120874											
LOXL2	4017	broad.mit.edu	37	chr8	23190903	23190903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtggccacacctcgtgcCccgtcctcacctctggcttg	9	18	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23190903	A	A	23190903	1	1	136	0	1	0	0	0	0	0	0	0	8987	638	22	2		2	LOXL2	8	23190903	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	19925481	23190903	123173119	214	120875											
EXTL3	2137	broad.mit.edu	37	chr8	28600642	28600642	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatgtgatgccccaggccAtccgggacatggtggatgaa	13	10	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28600642	G	G	28600642	3	3	136	1	0	0	0	0	1	0	0	0	5370	217	8	5	2475	5	EXTL3	8	28600642	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08	5409739	28600642	117763380	215	120876											
TEX15	56154	broad.mit.edu	37	chr8	30703484	30703484	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctcctactttagttataAgctgcaaagatgtgtgaact	7	8	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30703484	T	T	30703484	3	4	136	1	0	0	0	0	1	0	0	0	15901	72	3	5	5335	5	TEX15	8	30703484	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08	2102842	30703484	115660538	216	120877											
ANK1	286	broad.mit.edu	37	chr8	41556937	41556938	+	Intron	INS	-	C	C													cacagggttgcatctcggcaINScccccggggaccctcccggg							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41556938	C	C	41556937	6	5	136	0	1	1	1	0	0	0	0	0	620	174	6	0		0	ANK1	8	41556937	Intron	INS	-	TCGA-49-4494-01A-01D-1265-08	10853453	41556937	104807085	217	120878											
MYST3	7994	broad.mit.edu	37	chr8	41791382	41791382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactctgcagggtctgacaCgccgcaagagtttcctcaca	9	13	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41791382	A	A	41791382	2	1	136	1	0	0	0	0	0	0	0	1	10198	523	19	3		3	MYST3	8	41791382	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	234445	41791382	104572640	218	120879											
LYN	4067	broad.mit.edu	37	chr8	56911834	56911834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgcagtgagccgagatcGcatcattacattccagcctg	11	11	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56911834	T	T	56911834	1	4	136	0	1	0	0	0	0	0	0	0	9195	1102	38	3		3	LYN	8	56911834	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	15120452	56911834	89452188	219	120880											
UBXN2B	137886	broad.mit.edu	37	chr8	59337808	59337808	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatattcttttagagcatActcatcaggccagtatttga	7	9	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59337808	T	T	59337808	1	4	136	0	1	0	0	0	0	0	0	0	17041	406	14	5		5	UBXN2B	8	59337808	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	2425974	59337808	87026214	220	120881											
KCNB2	9312	broad.mit.edu	37	chr8	73480430	73480430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgaacgaagaactgaggcGagaggcagagactatgcgag	15	6	0	5			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73480430	T	T	73480430	3	4	136	1	0	0	0	0	1	0	0	0	8083	1058	37	3	463	3	KCNB2	8	73480430	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	14142622	73480430	72883592	221	120882											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885425	88885425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggccttccacccgctgcCttgatttccacagcgcagat	8	15	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88885425	A	A	88885425	3	1	136	1	0	0	0	0	1	0	0	0	4305	681	24	2	416	2	DCAF4L2	8	88885425	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	15404995	88885425	57478597	222	120883											
INTS8	55656	broad.mit.edu	37	chr8	95871887	95871887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtttaaataaaaggattGttaggatggtattattatac	8	1	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95871887	T	T	95871887	1	4	136	0	1	0	0	0	0	0	0	0	7854	1392	48	3		3	INTS8	8	95871887	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6986462	95871887	50492135	223	120884											
MTERFD1	51001	broad.mit.edu	37	chr8	97270732	97270732	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actattccataaggaggaagTcctgtaagtcttaaatcccc	7	10	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97270732	A	A	97270732	3	1	136	1	0	0	0	0	1	0	0	0	10013	1667	58	5	1094	5	MTERFD1	8	97270732	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	1398845	97270732	49093290	224	120885											
TG	7038	broad.mit.edu	37	chr8	133923494	133923494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtcactattccttgacCccctgaagtagggttggtgg	15	9	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133923494	A	A	133923494	1	1	136	0	1	0	0	0	0	0	0	0	15936	638	22	2		2	TG	8	133923494	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	36652762	133923494	12440528	225	120886											
EIF2C2	27161	broad.mit.edu	37	chr8	141595310	141595310	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccatttcgaagaaattggcCtgtaatttgattgttctccc	7	9	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141595310	G	G	141595310	3	3	136	1	0	0	0	0	1	0	0	0	5046	680	24	4	2528	4	EIF2C2	8	141595310	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	7671816	141595310	4768712	226	120887											
BAI1	575	broad.mit.edu	37	chr8	143570684	143570684	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcccccgacacctgtgcctCtggctcttgcaggaacacga	9	17	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143570684	T	T	143570684	1	4	136	0	1	0	0	0	0	0	0	0	1303	928	32	4		4	BAI1	8	143570684	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1975374	143570684	2793338	227	120888											
INSL6	11172	broad.mit.edu	37	chr9	5185531	5185531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggcactgctgatgtcGctcagttcacgagaaaaccg	10	12	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5185531	T	T	5185531	3	4	136	1	0	0	0	0	1	0	0	0	7840	1078	38	3	577	3	INSL6	9	5185531	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08		5185531	136027900	228	120889											
KIAA1045	23349	broad.mit.edu	37	chr9	34977191	34977191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtgccgccgggcccagCactcttggttttgcaaacgg	13	13	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34977191	A	A	34977191	3	1	136	1	0	0	0	0	1	0	0	0	8277	710	25	3	979	3	KIAA1045	9	34977191	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	29791660	34977191	106236240	229	120890											
FANCG	2189	broad.mit.edu	37	chr9	35077150	35077150	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctatagagcaggggtcatGatggggaacaagggtctaag	17	5	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35077150	A	A	35077150	1	1	136	0	1	0	0	0	0	0	0	0	5725	1305	45	4		4	FANCG	9	35077150	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	99959	35077150	106136281	230	120891											
TRPM3	80036	broad.mit.edu	37	chr9	73255626	73255626	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaagagagaaaacgacgatCagttattacaccaagagcgc	11	8	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73255626	G	G	73255626	1	3	136	0	1	0	0	0	0	0	0	0	16712	841	29	4		4	TRPM3	9	73255626	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	38178476	73255626	67957805	231	120892											
ABCA1	19	broad.mit.edu	37	chr9	107558164	107558164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaaatgtaaggcacagCaagaaagaaaggtgctttgc	11	7	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107558164	A	A	107558164	1	1	136	0	1	0	0	0	0	0	0	0	28	725	25	3		3	ABCA1	9	107558164	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	34302538	107558164	33655267	232	120893											
DOLPP1	57171	broad.mit.edu	37	chr9	131847610	131847610	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttccaccccggtcaggatGgccctgaacttgctcaggcc	11	15	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131847610	A	A	131847610	1	1	136	0	1	0	0	0	0	0	0	0	4744	1363	47	4		4	DOLPP1	9	131847610	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	24289446	131847610	9365821	233	120894											
FCN2	2220	broad.mit.edu	37	chr9	137772785	137772785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtaagggcactccagggCctcctcctggaaacttctcg	11	14	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137772785	A	A	137772785	1	1	136	0	1	0	0	0	0	0	0	0	5849	754	26	3		3	FCN2	9	137772785	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	5925175	137772785	3440646	234	120895											
GTPBP4	23560	broad.mit.edu	37	chr10	1034568	1034568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagagcggtcgccttccGctcgcccatcccccgctcct	11	19	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1034568	T	T	1034568	1	4	136	0	1	0	0	0	0	0	0	0	6947	1102	38	3		3	GTPBP4	10	1034568	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08		1034568	134500179	235	120896											
C10orf18	54906	broad.mit.edu	37	chr10	5777379	5777379	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaatgctaaaagggcaagGaaacaagagaaatctccagt	9	7	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5777379	A	A	5777379	2	1	136	1	0	0	0	0	0	0	0	1	1607	1165	41	4		4	C10orf18	10	5777379	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	4742811	5777379	129757368	236	120897											
FAM107B	83641	broad.mit.edu	37	chr10	14816188	14816188	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttgctgaaacattcgcCacatgatcccaacgctcctc	6	14	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14816188	T	T	14816188	1	4	136	0	1	0	0	0	0	0	0	0	5436	609	21	4		4	FAM107B	10	14816188	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	9038809	14816188	120718559	237	120898											
ITGA8	8516	broad.mit.edu	37	chr10	15646154	15646154	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcccttcttaacatttacTtgacttcaaaaatataccta	3	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15646154	A	A	15646154	1	1	136	0	1	0	0	0	0	0	0	0	7952	1624	56	5		5	ITGA8	10	15646154	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	829966	15646154	119888593	238	120899											
CUBN	8029	broad.mit.edu	37	chr10	17168813	17168813	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccagctggcaatagggaaGaaaaagcttcagttagctgg	12	8	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17168813	A	A	17168813	1	1	136	0	1	0	0	0	0	0	0	0	4084	957	33	4		4	CUBN	10	17168813	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1522659	17168813	118365934	239	120900											
ARHGAP21	57584	broad.mit.edu	37	chr10	24908654	24908654	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctaaagtatctgattgctCagtttcagcctcttgtaaac	6	9	5	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24908654	A	A	24908654	4	1	136	1	0	0	0	0	0	1	0	0	873	835	29	3	3778	3	ARHGAP21	10	24908654	Nonsense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	7739841	24908654	110626093	240	120901											
C10orf53	282966	broad.mit.edu	37	chr10	50916423	50916423	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcaagctcaccccaagTagtgacaagaggaccaccag	10	13	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50916423	A	A	50916423	3	1	136	1	0	0	0	0	1	0	0	0	1617	1635	57	5	313	5	C10orf53	10	50916423	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	26007769	50916423	84618324	241	120902											
HK1	3098	broad.mit.edu	37	chr10	71055341	71055341	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatatgttgtgaatgcaagTtgctaaaatgcatttgtaac	8	5	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71055341	C	C	71055341	1	2	136	0	1	0	0	0	0	0	0	0	7257	1740	60	5		5	HK1	10	71055341	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	20138918	71055341	64479406	242	120903											
UNC5B	219699	broad.mit.edu	37	chr10	73056384	73056384	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccagaaggccctccactGcactttcaccctggagaggc	10	16	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73056384	C	C	73056384	3	2	136	1	0	0	0	0	1	0	0	0	17118	1319	46	4	2433	4	UNC5B	10	73056384	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	2001043	73056384	62478363	243	120904											
LIPF	8513	broad.mit.edu	37	chr10	90429769	90429770	+	Intron	DNP	GG	TT	TT													ctttcccagtggttatggtaGgcatgttagcaaccacacta							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	90429770	TT	TT	90429769	1	4	136	0	1	0	0	0	0	0	0	0	8895	1015	35	2		2	LIPF	10	90429769	Intron	DNP	GG	TCGA-49-4494-01A-01D-1265-08	17373385	90429769	45104978	244	120905											
TNKS2	80351	broad.mit.edu	37	chr10	93576936	93576936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaccatccgaaatacagatgGaaggacagcattggatttag	10	7	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93576936	T	T	93576936	3	4	136	1	0	0	0	0	1	0	0	0	16444	1174	41	3	480	3	TNKS2	10	93576936	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	3147167	93576936	41957811	245	120906											
BTAF1	9044	broad.mit.edu	37	chr10	93683973	93683973	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctggagctttcttcagtaGacttcggagttcgccccgtg	11	12	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93683973	T	T	93683973	1	4	136	0	1	0	0	0	0	0	0	0	1545	957	33	3		3	BTAF1	10	93683973	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	107037	93683973	41850774	246	120907											
SLIT1	6585	broad.mit.edu	37	chr10	98797513	98797513	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagcgtgaactggttccCgtccaaatagctgcagagag	11	11	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98797513	A	A	98797513	3	1	136	1	0	0	0	0	1	0	0	0	14853	652	23	1	2360	1	SLIT1	10	98797513	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	5113540	98797513	36737234	247	120908											
TCF7L2	6934	broad.mit.edu	37	chr10	114925165	114925165	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcgacccaccctggggggGcgccactgtaattgtcctcg	13	14	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114925165	C	C	114925165	1	2	136	0	1	0	0	0	0	0	0	0	15820	1218	42	4		4	TCF7L2	10	114925165	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	16127652	114925165	20609582	248	120909											
NRAP	4892	broad.mit.edu	37	chr10	115364710	115364710	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctggccggtcaaattctAtctgtgcgttttcattgcag	12	9	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115364710	T	T	115364710	1	4	136	0	1	0	0	0	0	0	0	0	10733	464	16	5		5	NRAP	10	115364710	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	439545	115364710	20170037	249	120910											
NRAP	4892	broad.mit.edu	37	chr10	115375460	115375460	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaactcgtgccccttggGtcagcctcacctcactgata	7	14	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115375460	A	A	115375460	1	1	136	0	1	0	0	0	0	0	0	0	10733	1276	44	4		4	NRAP	10	115375460	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	10750	115375460	20159287	250	120911											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118354442	118354442	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtctctgtttggtagagaTgcagctgagagttatggatt	14	4	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118354442	A	A	118354442	1	1	136	0	1	0	0	0	0	0	0	0	12245	1479	51	5		5	PNLIPRP1	10	118354442	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	2978982	118354442	17180305	251	120912											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122334600	122334600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcactgagtccctgccaCtcaccacctgctagagtaac	7	17	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122334600	A	A	122334600	1	1	136	0	1	0	0	0	0	0	0	0	12389	580	20	3		3	PPAPDC1A	10	122334600	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	3980158	122334600	13200147	252	120913											
TNNT3	7140	broad.mit.edu	37	chr11	1957414	1957414	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgatgccccagccgcccatCcagccttgtaaccatcttgg	8	17	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1957414	A	A	1957414	1	1	136	0	1	0	0	0	0	0	0	0	16455	870	30	3		3	TNNT3	11	1957414	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08		1957414	133049102	253	120914											
TRIM5	85363	broad.mit.edu	37	chr11	5700213	5700213	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatgacttctggacttaTcaaatgtcagggaataaaga	8	6	4	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5700213	A	A	5700213	1	1	136	0	1	0	0	0	0	0	0	0	16650	1450	50	5		5	TRIM5	11	5700213	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	3742799	5700213	129306303	254	120915											
NLRP14	338323	broad.mit.edu	37	chr11	7059986	7059986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaagaaggccaggcgggagGacctggccaatttgatgaag	16	7	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7059986	T	T	7059986	3	4	136	1	0	0	0	0	1	0	0	0	10571	1174	41	3	171	3	NLRP14	11	7059986	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1359773	7059986	127946530	255	120916											
SYT9	143425	broad.mit.edu	37	chr11	7335179	7335180	+	Intron	DNP	CC	AA	AA													aatatgtcaccaatgtgagtCcagcatttcttcatttttgt							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7335180	AA	AA	7335179	1	1	136	0	1	0	0	0	0	0	0	0	15600	870	30	3		3	SYT9	11	7335179	Intron	DNP	CC	TCGA-49-4494-01A-01D-1265-08	275193	7335179	127671337	256	120917											
PTH	5741	broad.mit.edu	37	chr11	13514260	13514260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttcccattagctccccaCttcgaaatgataaagtcaac	4	14	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13514260	A	A	13514260	1	1	136	0	1	0	0	0	0	0	0	0	12863	580	20	3		3	PTH	11	13514260	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	6179081	13514260	121492256	257	120918											
USH1C	10083	broad.mit.edu	37	chr11	17527437	17527437	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctcctggtggaccatgacAggtttggagatggtggacac	16	8	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17527437	T	T	17527437	1	4	136	0	1	0	0	0	0	0	0	0	17160	175	7	5		5	USH1C	11	17527437	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	4013177	17527437	117479079	258	120919											
USH1C	10083	broad.mit.edu	37	chr11	17552759	17552759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggagatgaagagcccaCagccaaactccaggccacca	12	13	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17552759	A	A	17552759	3	1	136	1	0	0	0	0	1	0	0	0	17160	478	17	3	2544	3	USH1C	11	17552759	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	25322	17552759	117453757	259	120920											
TSG101	7251	broad.mit.edu	37	chr11	18503191	18503192	+	Missense_Mutation	DNP	CC	AG	AG													aaataccttcaggaagacatCcaggtctatcacgccccttc							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	18503192	AG	AG	18503191	3	1	136	1	0	0	0	0	1	0	0	0	16741	855	30	3	111	3	TSG101	11	18503191	Missense_Mutation	DNP	CC	TCGA-49-4494-01A-01D-1265-08	950432	18503191	116503325	260	120921											
NAV2	89797	broad.mit.edu	37	chr11	19890506	19890506	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcttgaatttcctggcAgctaagggaataaacatcca	9	10	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19890506	T	T	19890506	2	4	136	1	0	0	0	0	0	0	0	1	10278	175	7	5		5	NAV2	11	19890506	Silent	SNP	A	TCGA-49-4494-01A-01D-1265-08	1387315	19890506	115116010	261	120922											
KCNA4	3739	broad.mit.edu	37	chr11	30033103	30033104	+	Nonsense_Mutation	DNP	CC	AA	AA													ccatacaatacagactgtttCcacgatgaagaaggggtcat							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	30033104	AA	AA	30033103	4	1	136	1	0	0	0	0	0	1	0	0	8075	864	30	3	842	3	KCNA4	11	30033103	Nonsense_Mutation	DNP	CC	TCGA-49-4494-01A-01D-1265-08	10142597	30033103	104973413	262	120923											
EIF3M	10480	broad.mit.edu	37	chr11	32611264	32611264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttttttaaagagaagtaGggccagtaattttgctttac	9	4	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32611264	T	T	32611264	1	4	136	0	1	0	0	0	0	0	0	0	5065	1015	35	2		2	EIF3M	11	32611264	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	2578161	32611264	102395252	263	120924											
RAG2	5897	broad.mit.edu	37	chr11	36614627	36614627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgttgatgtttgactGtttgtgaatgttgtctgctc	10	6	3	3	rs150349031	byFrequency	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36614627	T	T	36614627	3	4	136	1	0	0	0	0	1	0	0	0	13113	1368	48	3	495	3	RAG2	11	36614627	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	4003363	36614627	98391889	264	120925											
PTPRJ	5795	broad.mit.edu	37	chr11	48146645	48146645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacggaagtcctgcttgtcGggttagagcctggcacccga	13	12	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48146645	T	T	48146645	3	4	136	1	0	0	0	0	1	0	0	0	12912	1116	39	1	1022	1	PTPRJ	11	48146645	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	11532018	48146645	86859871	265	120926											
OR5D16	390144	broad.mit.edu	37	chr11	55607017	55607017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcctctactgtgtaCccaactccaaaaactccagg	4	16	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55607017	A	A	55607017	3	1	136	1	0	0	0	0	1	0	0	0	11250	507	18	3	792	3	OR5D16	11	55607017	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	7460372	55607017	79399499	266	120927											
SERPING1	710	broad.mit.edu	37	chr11	57381746	57381746	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaggacaaaggtctccatCagctgagggtatcatgctgg	12	9	4	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57381746	T	T	57381746	1	4	136	0	1	0	0	0	0	0	0	0	14229	841	29	4		4	SERPING1	11	57381746	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1774729	57381746	77624770	267	120928											
OR5B3	441608	broad.mit.edu	37	chr11	58170034	58170034	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agactatagaccagagggttCagcatggggatgaccattgt	13	7	1	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58170034	A	A	58170034	2	1	136	1	0	0	0	0	0	0	0	1	11246	813	29	3		3	OR5B3	11	58170034	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	788288	58170034	76836482	268	120929											
GLYAT	10249	broad.mit.edu	37	chr11	58477937	58477937	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgttctgagttacatttttTaaaaatgtaattctgatttc	5	4	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58477937	A	A	58477937	1	1	136	0	1	0	0	0	0	0	0	0	6543	1769	61	5		5	GLYAT	11	58477937	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	307903	58477937	76528579	269	120930											
OR4D6	219983	broad.mit.edu	37	chr11	59225059	59225059	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacggactggtgaccctgcTctggttcctcctgctcctgg	11	15	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59225059	A	A	59225059	3	1	136	1	0	0	0	0	1	0	0	0	11152	1551	54	5	628	5	OR4D6	11	59225059	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	747122	59225059	75781457	270	120931											
VWCE	220001	broad.mit.edu	37	chr11	61036387	61036387	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcttggggcagaggcaggGgattacctgctgaacagtct	17	8	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61036387	C	C	61036387	1	2	136	0	1	0	0	0	0	0	0	0	17372	1247	43	4		4	VWCE	11	61036387	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1811328	61036387	73970129	271	120932											
SCGB2A2	4250	broad.mit.edu	37	chr11	62037700	62037700	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcctcaccatgaagttgctGatggtcctcatgctggcggc	12	12	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62037700	T	T	62037700	2	4	136	1	0	0	0	0	0	0	0	1	14012	1277	45	3		3	SCGB2A2	11	62037700	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	1001313	62037700	72968816	272	120933											
EML3	256364	broad.mit.edu	37	chr11	62373360	62373360	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagccctgggccaggtcTcccctcagcaatgcattctt	10	14	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62373360	C	C	62373360	2	2	136	1	0	0	0	0	0	0	0	1	5140	1538	54	5		5	EML3	11	62373360	Silent	SNP	T	TCGA-49-4494-01A-01D-1265-08	335660	62373360	72633156	273	120934											
CCDC88B	283234	broad.mit.edu	37	chr11	64121092	64121092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcagtccaatctgcggCacgggaccagtgcgtcctcg	13	14	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64121092	A	A	64121092	1	1	136	0	1	0	0	0	0	0	0	0	2892	725	25	3		3	CCDC88B	11	64121092	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1747732	64121092	70885424	274	120935											
PCNXL3	399909	broad.mit.edu	37	chr11	65387782	65387782	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttctgtctctgccacgCtgcctcatctcccataccct	6	18	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65387782	T	T	65387782	1	4	136	0	1	0	0	0	0	0	0	0	11687	812	28	4		4	PCNXL3	11	65387782	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1266690	65387782	69618734	275	120936											
PC	5091	broad.mit.edu	37	chr11	66620999	66620999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagaggggcacttccccGtccctcagccctctcctcac	8	20	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66620999	A	A	66620999	1	1	136	0	1	0	0	0	0	0	0	0	11591	1160	40	4		4	PC	11	66620999	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1233217	66620999	68385517	276	120937											
NOX4	50507	broad.mit.edu	37	chr11	89088203	89088203	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggaggcagtagtaaatctcGaaatcgttctgtcaaaagaa	10	6	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89088203	A	A	89088203	4	1	136	1	0	0	0	0	0	1	0	0	10653	1066	37	4	616	4	NOX4	11	89088203	Nonsense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	22467204	89088203	45918313	277	120938											
ANKRD49	54851	broad.mit.edu	37	chr11	94230120	94230120	+	Intron	DEL	A	-	-													gctgctgaaaaaaatcgggtAaaaaaaaaaattacagaggg							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94230120	-	-	94230120	6	5	136	0	1	1	0	1	0	0	0	0	675	377	13	0		0	ANKRD49	11	94230120	Intron	DEL	A	TCGA-49-4494-01A-01D-1265-08	5141917	94230120	40776396	278	120939											
DYNC2H1	79659	broad.mit.edu	37	chr11	103029646	103029646	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatttttattaggaaaaacGctcagcattcccaagatttt	5	8	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103029646	A	A	103029646	3	1	136	1	0	0	0	0	1	0	0	0	4886	1087	38	4	4378	4	DYNC2H1	11	103029646	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	8799526	103029646	31976870	279	120940											
HTR3A	3359	broad.mit.edu	37	chr11	113860141	113860141	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaccatgttcaggtcaCcacccggggtctccctctct	9	15	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113860141	T	T	113860141	1	4	136	0	1	0	0	0	0	0	0	0	7514	522	18	4		4	HTR3A	11	113860141	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	10830495	113860141	21146375	280	120941											
ARHGAP32	9743	broad.mit.edu	37	chr11	128851280	128851280	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggaagctgagacacaccCtcctggtaggaagggccatc	12	12	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128851280	T	T	128851280	1	4	136	0	1	0	0	0	0	0	0	0	883	696	24	4		4	ARHGAP32	11	128851280	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	14991139	128851280	6155236	281	120942											
WNT5B	81029	broad.mit.edu	37	chr12	1741938	1741938	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagctgtgccaattgtaCcaggagcacatggcctacat	11	10	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1741938	A	A	1741938	4	1	136	1	0	0	0	0	0	1	0	0	17519	518	18	3	201	3	WNT5B	12	1741938	Nonsense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08		1741938	132109957	282	120943											
A2ML1	144568	broad.mit.edu	37	chr12	8976459	8976459	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacagactgacaaacctctCtacaccccagggcagcaagg	9	14	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8976459	G	G	8976459	2	3	136	1	0	0	0	0	0	0	0	1	5	900	32	4		4	A2ML1	12	8976459	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	7234521	8976459	124875436	283	120944											
ABCC9	10060	broad.mit.edu	37	chr12	22012531	22012531	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcttaccaaaaagacaaTgttggtgttttgatacagcg	8	6	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22012531	C	C	22012531	3	2	136	1	0	0	0	0	1	0	0	0	59	1464	51	5	2373	5	ABCC9	12	22012531	Missense_Mutation	SNP	T	TCGA-49-4494-01A-01D-1265-08	13036072	22012531	111839364	284	120945											
SOX5	6660	broad.mit.edu	37	chr12	23818455	23818455	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccagtgtccgttgatcaGgagggaatacgggaatcatt	13	8	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23818455	A	A	23818455	3	1	136	1	0	0	0	0	1	0	0	0	15068	1000	35	4	1483	4	SOX5	12	23818455	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1805924	23818455	110033440	285	120946											
CASC1	55259	broad.mit.edu	37	chr12	25272362	25272362	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcctatttatatatagaTtaacaaaatgtcacaacaaa	3	6	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25272362	C	C	25272362	1	2	136	0	1	0	0	0	0	0	0	0	2686	1508	52	5		5	CASC1	12	25272362	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	1453907	25272362	108579533	286	120947											
FGD4	121512	broad.mit.edu	37	chr12	32735088	32735088	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccaacggtgtaatggcagCacaaaaccagatggaatgtg	13	8	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32735088	G	G	32735088	3	3	136	1	0	0	0	0	1	0	0	0	5892	710	25	4	293	4	FGD4	12	32735088	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	7462726	32735088	101116807	287	120948											
LRRK2	120892	broad.mit.edu	37	chr12	40653253	40653253	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgaatcagatcagtctttCaataagcatgccaattttat	5	7	4	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40653253	G	G	40653253	1	3	136	0	1	0	0	0	0	0	0	0	9120	841	29	4		4	LRRK2	12	40653253	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	7918165	40653253	93198642	288	120949											
ADCY6	112	broad.mit.edu	37	chr12	49171021	49171021	+	Intron	DEL	G	-	-													aggcagtgattctcctgaatGggaaggaattggagggaagg							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49171021	-	-	49171021	6	5	136	0	1	1	0	1	0	0	0	0	298	1363	47	0		0	ADCY6	12	49171021	Intron	DEL	G	TCGA-49-4494-01A-01D-1265-08	8517768	49171021	84680874	289	120950											
METTL7A	25840	broad.mit.edu	37	chr12	51319018	51319018	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtaacctgcaggagtttgCgggcccctccgggaaactct	12	13	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51319018	T	T	51319018	3	4	136	1	0	0	0	0	1	0	0	0	9598	768	27	4	199	4	METTL7A	12	51319018	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2147997	51319018	82532877	290	120951											
KRT5	3852	broad.mit.edu	37	chr12	52913032	52913032	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctcccacctctttccgtCcctctaaagcttttctgtgc	5	17	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52913032	A	A	52913032	1	1	136	0	1	0	0	0	0	0	0	0	8550	870	30	3		3	KRT5	12	52913032	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1594014	52913032	80938863	291	120952											
KRT79	338785	broad.mit.edu	37	chr12	53215788	53215788	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccttggtggcccccccactCccacccagggagatgccacc	9	21	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53215788	A	A	53215788	2	1	136	1	0	0	0	0	0	0	0	1	8563	842	30	3		3	KRT79	12	53215788	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	302756	53215788	80636107	292	120953											
RARG	5916	broad.mit.edu	37	chr12	53607014	53607014	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccactttttcgggctcctcCaggtccatgcggtctatggg	11	13	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53607014	T	T	53607014	2	4	136	1	0	0	0	0	0	0	0	1	13162	581	21	4		4	RARG	12	53607014	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	391226	53607014	80244881	293	120954											
MON2	23041	broad.mit.edu	37	chr12	62937047	62937047	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgagctaatgattctaaAtagccatttgaaaaatcagc	6	8	2	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62937047	G	G	62937047	1	3	136	0	1	0	0	0	0	0	0	0	9794	116	4	5		5	MON2	12	62937047	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	9330033	62937047	70914848	294	120955											
DPY19L2	283417	broad.mit.edu	37	chr12	63976122	63976122	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattagtcagcaaagccacAgtaactactaagtatagctg	8	8	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63976122	G	G	63976122	1	3	136	0	1	0	0	0	0	0	0	0	4781	203	7	5		5	DPY19L2	12	63976122	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	1039075	63976122	69875773	295	120956											
SLC6A15	55117	broad.mit.edu	37	chr12	85286003	85286003	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgataggaagtaaagacCgaggatgatatcaaataaat	9	4	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85286003	A	A	85286003	1	1	136	0	1	0	0	0	0	0	0	0	14792	667	23	1		1	SLC6A15	12	85286003	5'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	21309881	85286003	48565892	296	120957											
NTS	4922	broad.mit.edu	37	chr12	86268247	86268247	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttcagctcctggagtctGtgctcaggtaagcaaaacag	11	10	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86268247	T	T	86268247	2	4	136	1	0	0	0	0	0	0	0	1	10804	1364	48	3		3	NTS	12	86268247	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	982244	86268247	47583648	297	120958											
WSCD2	9671	broad.mit.edu	37	chr12	108618655	108618655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgagcacaaggtggggCccatggaactcagggggagg	19	7	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108618655	A	A	108618655	1	1	136	0	1	0	0	0	0	0	0	0	17534	754	26	3		3	WSCD2	12	108618655	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	22350408	108618655	25233240	298	120959											
TRPV4	59341	broad.mit.edu	37	chr12	110238349	110238349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatggtcagggctgcagaCaccaaccagtatcatgctat	11	10	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110238349	A	A	110238349	1	1	136	0	1	0	0	0	0	0	0	0	16723	493	17	3		3	TRPV4	12	110238349	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1619694	110238349	23613546	299	120960											
MED13L	23389	broad.mit.edu	37	chr12	116413011	116413011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagacgcccaagtcgcCcgattacaactctccagggt	10	15	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116413011	A	A	116413011	3	1	136	1	0	0	0	0	1	0	0	0	9524	623	22	2	964	2	MED13L	12	116413011	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	6174662	116413011	17438884	300	120961											
TAOK3	51347	broad.mit.edu	37	chr12	118650764	118650764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcctgaggtattttctgCaagcagtaatcaacaaatct	6	9	3	1	rs147202627	byFrequency;by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118650764	A	A	118650764	3	1	136	1	0	0	0	0	1	0	0	0	15668	709	25	3	1966	3	TAOK3	12	118650764	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2237753	118650764	15201131	301	120962											
LRRC43	254050	broad.mit.edu	37	chr12	122669057	122669057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagaaaatccctcctctgCcactgcagaataagtcgcgc	7	14	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122669057	A	A	122669057	1	1	136	0	1	0	0	0	0	0	0	0	9088	754	26	3		3	LRRC43	12	122669057	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	4018293	122669057	11182838	302	120963											
N4BP2L2	10443	broad.mit.edu	37	chr13	33092138	33092138	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagacacaccatgtttattcCtcctaacaaaaaagaaaagg	6	9	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33092138	G	G	33092138	3	3	136	1	0	0	0	0	1	0	0	0	10206	681	24	4	2063	4	N4BP2L2	13	33092138	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08		33092138	82077740	303	120964											
NHLRC3	387921	broad.mit.edu	37	chr13	39618386	39618386	+	Intron	SNP	G	T	T													ttgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtgtgtgtc							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39618386	T	T	39618386	1	4	136	0	1	0	0	0	0	0	0	0	10502	1392	48	3		3	NHLRC3	13	39618386	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6526248	39618386	75551492	304	120965	527	2									
NHLRC3	387921	broad.mit.edu	37	chr13	39618392	39618392	+	Intron	SNP	G	T	T													gtgtgtgtgtgtgtgtgtgtGtgtgtgtgtgtgtctgggca							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39618392	T	T	39618392	1	4	136	0	1	0	0	0	0	0	0	0	10502	1392	48	3		3	NHLRC3	13	39618392	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6	39618392	75551486	305	120966	527	2									
DACH1	1602	broad.mit.edu	37	chr13	72440283	72440283	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggggcaggcagatcagctCgcagccctccaccgtgaagg	14	14	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72440283	T	T	72440283	3	4	136	1	0	0	0	0	1	0	0	0	4253	893	31	4	1545	4	DACH1	13	72440283	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	32821891	72440283	42729595	306	120967											
C13orf34	79866	broad.mit.edu	37	chr13	73317630	73317630	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtaatgctaaagcaaaTgaagagtataaaacatagga	8	3	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73317630	C	C	73317630	1	2	136	0	1	0	0	0	0	0	0	0	1741	1479	51	5		5	C13orf34	13	73317630	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	877347	73317630	41852248	307	120968											
UGGT2	55757	broad.mit.edu	37	chr13	96515938	96515938	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttcatcggtaaggatatCttccttaattttgtctgttt	6	7	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96515938	A	A	96515938	3	1	136	1	0	0	0	0	1	0	0	0	17068	913	32	3	997	3	UGGT2	13	96515938	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	23198308	96515938	18653940	308	120969											
NALCN	259232	broad.mit.edu	37	chr13	101720991	101720991	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgcttgaaaataatacatAattatctaagtacctgagtt	5	5	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101720991	T	T	101720991	1	4	136	0	1	0	0	0	0	0	0	0	10242	377	13	5		5	NALCN	13	101720991	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	5205053	101720991	13448887	309	120970											
FGF14	2259	broad.mit.edu	37	chr13	102375188	102375188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaggatctggctatgttGtcttactcttgttgactggt	12	6	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102375188	T	T	102375188	3	4	136	1	0	0	0	0	1	0	0	0	5900	1377	48	3	10	3	FGF14	13	102375188	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	654197	102375188	12794690	310	120971											
COL4A1	1282	broad.mit.edu	37	chr13	110827789	110827789	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgcctccacagccagccaaGaatgagatacaagaacgtga	10	11	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110827789	C	C	110827789	1	2	136	0	1	0	0	0	0	0	0	0	3721	957	33	4		4	COL4A1	13	110827789	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	8452601	110827789	4342089	311	120972											
OR4N2	390429	broad.mit.edu	37	chr14	20296431	20296431	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaggtggtttctctcttccAcacagtgatttttcctttgt	7	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20296431	T	T	20296431	3	4	136	1	0	0	0	0	1	0	0	0	11171	159	6	5	826	5	OR4N2	14	20296431	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08		20296431	87053109	312	120973											
OR4K15	81127	broad.mit.edu	37	chr14	20443788	20443788	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgggtgacagaatttgtGttgctgggactgtctagttc	13	7	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20443788	T	T	20443788	2	4	136	1	0	0	0	0	0	0	0	1	11164	1364	48	3		3	OR4K15	14	20443788	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	147357	20443788	86905752	313	120974											
TGM1	7051	broad.mit.edu	37	chr14	24727669	24727669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccccagcctccccagcCctgcccaccctccacctcca	4	25	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24727669	A	A	24727669	1	1	136	0	1	0	0	0	0	0	0	0	15952	638	22	2		2	TGM1	14	24727669	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	4283881	24727669	82621871	314	120975											
SCFD1	23256	broad.mit.edu	37	chr14	31152312	31152312	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagatacttcttaaaagctGtggggtttttccagggtttg	12	6	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31152312	A	A	31152312	1	1	136	0	1	0	0	0	0	0	0	0	14001	1392	48	4		4	SCFD1	14	31152312	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6424643	31152312	76197228	315	120976											
C14orf28	122525	broad.mit.edu	37	chr14	45373686	45373686	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atatgcaacattggaaatctGaagatctggcgtatgtaccc	9	8	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45373686	A	A	45373686	3	1	136	1	0	0	0	0	1	0	0	0	1783	1291	45	4	713	4	C14orf28	14	45373686	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	14221374	45373686	61975854	316	120977											
C14orf106	55320	broad.mit.edu	37	chr14	45697050	45697050	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggagatttcaataaatGgttatataaaagagaagctg	10	2	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45697050	A	A	45697050	1	1	136	0	1	0	0	0	0	0	0	0	1751	1363	47	4		4	C14orf106	14	45697050	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	323364	45697050	61652490	317	120978											
NIN	51199	broad.mit.edu	37	chr14	51288551	51288551	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaccccggcagaaaccGcaccccacttcccatagcca	6	21	0	1	rs116619609	by1000genomes	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51288551	A	A	51288551	1	1	136	0	1	0	0	0	0	0	0	0	10512	1102	38	4		4	NIN	14	51288551	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	5591501	51288551	56060989	318	120979											
PTGDR	5729	broad.mit.edu	37	chr14	52735015	52735015	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgagcgccttctccctGgctttctgcgcgctaccttt	11	14	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52735015	T	T	52735015	2	4	136	1	0	0	0	0	0	0	0	1	12847	1335	47	2		2	PTGDR	14	52735015	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	1446464	52735015	54614525	319	120980											
ADAM21	8747	broad.mit.edu	37	chr14	70925692	70925692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatagatatgtgcaggaCgggatcccctgtagtgacag	14	7	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70925692	A	A	70925692	3	1	136	1	0	0	0	0	1	0	0	0	243	535	19	3	1478	3	ADAM21	14	70925692	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	18190677	70925692	36423848	320	120981											
CATSPERB	79820	broad.mit.edu	37	chr14	92074715	92074715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatctgtgagtggaatagCaattcccatattagatggag	10	5	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92074715	A	A	92074715	3	1	136	1	0	0	0	0	1	0	0	0	2717	710	25	3	742	3	CATSPERB	14	92074715	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	21149023	92074715	15274825	321	120982											
RIN3	79890	broad.mit.edu	37	chr14	93107608	93107608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgcccttcacactgcggCtaccccaggccatccttgag	8	17	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93107608	A	A	93107608	3	1	136	1	0	0	0	0	1	0	0	0	13484	796	28	3	484	3	RIN3	14	93107608	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1032893	93107608	14241932	322	120983											
ITPK1	3705	broad.mit.edu	37	chr14	93482917	93482917	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatttctccagactatacCtccagagagctgctaccgcc	7	16	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93482917	A	A	93482917	1	1	136	0	1	0	0	0	0	0	0	0	7986	696	24	2		2	ITPK1	14	93482917	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	375309	93482917	13866623	323	120984											
UBR7	55148	broad.mit.edu	37	chr14	93686679	93686679	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaagggaagattgccCaggccactgacaggagcgat	12	9	0	2	rs147191980		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93686679	T	T	93686679	4	4	136	1	0	0	0	0	0	1	0	0	17032	595	21	4	1079	4	UBR7	14	93686679	Nonsense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	203762	93686679	13662861	324	120985											
ASPG	374569	broad.mit.edu	37	chr14	104559703	104559703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagaacttgctatgtgCggagcccttggcgtaggggc	16	9	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104559703	T	T	104559703	1	4	136	0	1	0	0	0	0	0	0	0	1056	783	27	4		4	ASPG	14	104559703	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	10873024	104559703	2789837	325	120986											
CYFIP1	23191	broad.mit.edu	37	chr15	22989934	22989934	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttaagggcagtagattttAcaagtcagtagactcagacc	10	7	2	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22989934	T	T	22989934	1	4	136	0	1	0	0	0	0	0	0	0	4170	406	14	5		5	CYFIP1	15	22989934	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08		22989934	79541458	326	120987											
C15orf2	23742	broad.mit.edu	37	chr15	24921511	24921511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaagaaggatgaggatcCggtgcagatcgaaggggagg	19	4	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921511	A	A	24921511	3	1	136	1	0	0	0	0	1	0	0	0	1797	652	23	1	499	1	C15orf2	15	24921511	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1931577	24921511	77609881	327	120988											
GABRA5	2558	broad.mit.edu	37	chr15	27128544	27128544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaggcttcggtttaagGggcccatgcagcgcctccct	12	12	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27128544	T	T	27128544	3	4	136	1	0	0	0	0	1	0	0	0	6224	1232	43	2	351	2	GABRA5	15	27128544	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	2207033	27128544	75402848	328	120989											
GABRG3	2567	broad.mit.edu	37	chr15	27765182	27765182	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgggatacttcaccattcaGacatacattccctgtatact	5	11	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27765182	A	A	27765182	2	1	136	1	0	0	0	0	0	0	0	1	6233	933	33	4		4	GABRG3	15	27765182	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	636638	27765182	74766210	329	120990											
HERC2	8924	broad.mit.edu	37	chr15	28459224	28459224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaacacaaacccacccCttcggaaggccttcccacaa	6	17	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28459224	A	A	28459224	3	1	136	1	0	0	0	0	1	0	0	0	7125	681	24	2	8163	2	HERC2	15	28459224	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	694042	28459224	74072168	330	120991											
MGA	23269	broad.mit.edu	37	chr15	42042148	42042148	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacttggtgatgtgaaggtgGaacagcagaaaggatttgac	14	4	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42042148	T	T	42042148	4	4	136	1	0	0	0	0	0	1	0	0	9633	1175	41	3	6405	3	MGA	15	42042148	Nonsense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	13582924	42042148	60489244	331	120992											
SEMA6D	80031	broad.mit.edu	37	chr15	48023097	48023097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgactgcaggggccggagcCaccttctttcccttggcctt	11	15	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48023097	A	A	48023097	1	1	136	0	1	0	0	0	0	0	0	0	14155	609	21	2		2	SEMA6D	15	48023097	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	5980949	48023097	54508295	332	120993											
ATP8B4	79895	broad.mit.edu	37	chr15	50264909	50264909	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtcgttcgagccactgcAggtattgcttttcgagaata	12	8	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50264909	T	T	50264909	2	4	136	1	0	0	0	0	0	0	0	1	1201	175	7	5		5	ATP8B4	15	50264909	Silent	SNP	A	TCGA-49-4494-01A-01D-1265-08	2241812	50264909	52266483	333	120994											
CYP19A1	1588	broad.mit.edu	37	chr15	51507444	51507444	+	Intron	DEL	G	-	-													acgtttctgaacaattggaaGatgggaaaaatttggaaaag							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51507444	-	-	51507444	6	5	136	0	1	1	0	1	0	0	0	0	4181	957	33	0		0	CYP19A1	15	51507444	Intron	DEL	G	TCGA-49-4494-01A-01D-1265-08	1242535	51507444	51023948	334	120995											
ALDH1A2	8854	broad.mit.edu	37	chr15	58254091	58254091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagccatgttcattactGttgcaaaatgaatatatgta	6	6	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58254091	T	T	58254091	1	4	136	0	1	0	0	0	0	0	0	0	491	1392	48	3		3	ALDH1A2	15	58254091	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6746647	58254091	44277301	335	120996											
CCDC33	80125	broad.mit.edu	37	chr15	74559018	74559018	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctcattttttctctttccaGatgtgatcctcaaggtggtg	9	9	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74559018	C	C	74559018	5	2	136	1	0	0	0	0	0	0	1	0	2833	956	33	4	333	4	CCDC33	15	74559018	Splice_Site	SNP	G	TCGA-49-4494-01A-01D-1265-08	16304927	74559018	27972374	336	120997											
LMAN1L	79748	broad.mit.edu	37	chr15	75116910	75116910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggagaggggacacttcaGctcagaggggacctgccgag	16	9	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75116910	T	T	75116910	1	4	136	0	1	0	0	0	0	0	0	0	8911	986	34	3		3	LMAN1L	15	75116910	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	557892	75116910	27414482	337	120998											
C15orf27	123591	broad.mit.edu	37	chr15	76452301	76452301	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccttgctctctgaccCaatttccaccagatctaaac	5	16	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76452301	T	T	76452301	1	4	136	0	1	0	0	0	0	0	0	0	1801	609	21	4		4	C15orf27	15	76452301	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1335391	76452301	26079091	338	120999											
ZNF592	9640	broad.mit.edu	37	chr15	85327613	85327613	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccccgtgcccctctatgcGccaaatctcagcccgcctgc	7	20	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85327613	A	A	85327613	2	1	136	1	0	0	0	0	0	0	0	1	18149	1074	38	4		4	ZNF592	15	85327613	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	8875312	85327613	17203779	339	121000											
AGBL1	123624	broad.mit.edu	37	chr15	87217502	87217502	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgctttgtttaactggcAgggtctacagtttggtacca	10	7	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87217502	G	G	87217502	5	3	136	1	0	0	0	0	0	0	1	0	375	202	7	5	3000	5	AGBL1	15	87217502	Splice_Site	SNP	A	TCGA-49-4494-01A-01D-1265-08	1889889	87217502	15313890	340	121001											
RHCG	51458	broad.mit.edu	37	chr15	90026277	90026277	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacccccaccacctcatcCccattctgagccctgctcac	4	22	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90026277	T	T	90026277	1	4	136	0	1	0	0	0	0	0	0	0	13435	638	22	4		4	RHCG	15	90026277	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	2808775	90026277	12505115	341	121002											
FES	2242	broad.mit.edu	37	chr15	91434895	91434895	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgttgtcctgcacaggGctgtgcccaaggtgagcctg	16	10	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91434895	A	A	91434895	3	1	136	1	0	0	0	0	1	0	0	0	5877	1203	42	4	1684	4	FES	15	91434895	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1408618	91434895	11096497	342	121003											
LRRK1	79705	broad.mit.edu	37	chr15	101601410	101601410	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaacacagagaagggcctcAtggaggtgcagaggatgtgc	16	7	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101601410	T	T	101601410	3	4	136	1	0	0	0	0	1	0	0	0	9119	217	8	5	4828	5	LRRK1	15	101601410	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08	10166515	101601410	929982	343	121004											
NARFL	64428	broad.mit.edu	37	chr16	781625	781625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctctcgggccgcgtgcCggaacacgtgctccaggtag	15	13	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	781625	A	A	781625	3	1	136	1	0	0	0	0	1	0	0	0	10262	652	23	1	468	1	NARFL	16	781625	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08		781625	89573128	344	121005											
ABCC6	368	broad.mit.edu	37	chr16	16276105	16276105	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcaattagtgattacgtaTtgagcacctagcacgtgctt	8	8	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16276105	C	C	16276105	1	2	136	0	1	0	0	0	0	0	0	0	57	1508	52	5		5	ABCC6	16	16276105	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	15494480	16276105	74078648	345	121006											
ACSM2B	348158	broad.mit.edu	37	chr16	20552291	20552291	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgaagtcgtttattggagGagcaggtggacaatagattg	14	4	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20552291	A	A	20552291	1	1	136	0	1	0	0	0	0	0	0	0	184	1189	41	4		4	ACSM2B	16	20552291	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	4276186	20552291	69802462	346	121007											
ZP2	7783	broad.mit.edu	37	chr16	21213575	21213575	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtagctgtagacctcgacGtccataaacccatcctgggt	10	12	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21213575	A	A	21213575	2	1	136	1	0	0	0	0	0	0	0	1	18345	1136	40	4		4	ZP2	16	21213575	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	661284	21213575	69141178	347	121008											
SCNN1B	6338	broad.mit.edu	37	chr16	23382995	23382995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccccctggcacctgcagGggtccacagccctctgtccc	10	21	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23382995	T	T	23382995	1	4	136	0	1	0	0	0	0	0	0	0	14041	1247	43	2		2	SCNN1B	16	23382995	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	2169420	23382995	66971758	348	121009											
ERN2	10595	broad.mit.edu	37	chr16	23702439	23702439	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccaggcccacccaggccCcaacacataccttgttcctc	6	20	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23702439	T	T	23702439	1	4	136	0	1	0	0	0	0	0	0	0	5280	638	22	4		4	ERN2	16	23702439	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	319444	23702439	66652314	349	121010											
BOLA2	552900	broad.mit.edu	37	chr16	30034596	30034596	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagcactttctcccctcacCccaaagtgccatcagaacag	5	17	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30034596	T	T	30034596	1	4	136	0	1	0	0	0	0	0	0	0	1492	638	22	4		4	BOLA2	16	30034596	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	6332157	30034596	60320157	350	121011											
ABCC11	85320	broad.mit.edu	37	chr16	48231747	48231747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactacttggttctggaacCtgtgtatgtaaatgcttagg	10	7	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48231747	A	A	48231747	1	1	136	0	1	0	0	0	0	0	0	0	51	696	24	2		2	ABCC11	16	48231747	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	18197151	48231747	42123006	351	121012											
ZNF423	23090	broad.mit.edu	37	chr16	49671380	49671380	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtaggggcaggaatagacCtccatgaaggactgcgtggg	16	8	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49671380	G	G	49671380	3	3	136	1	0	0	0	0	1	0	0	0	18025	680	24	4	2191	4	ZNF423	16	49671380	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1439633	49671380	40683373	352	121013											
SLC6A2	6530	broad.mit.edu	37	chr16	55731794	55731794	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattcctgcaccccacccctCctggttccctccagatggga	7	18	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55731794	A	A	55731794	1	1	136	0	1	0	0	0	0	0	0	0	14797	870	30	3		3	SLC6A2	16	55731794	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	6060414	55731794	34622959	353	121014											
CDH8	1006	broad.mit.edu	37	chr16	61761098	61761098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttaatagcaacaggtactCgtgatatctgactgtggttc	9	8	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61761098	A	A	61761098	3	1	136	1	0	0	0	0	1	0	0	0	3146	884	31	3	979	3	CDH8	16	61761098	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	6029304	61761098	28593655	354	121015											
HAS3	3038	broad.mit.edu	37	chr16	69148656	69148656	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctggatgacctacgagtcAgtggtcacgggtttcttccc	11	12	4	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69148656	T	T	69148656	2	4	136	1	0	0	0	0	0	0	0	1	7029	175	7	5		5	HAS3	16	69148656	Silent	SNP	A	TCGA-49-4494-01A-01D-1265-08	7387558	69148656	21206097	355	121016											
NFAT5	10725	broad.mit.edu	37	chr16	69726307	69726307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaattcagagtggtgtaaGccctggaatgttttcctcaa	9	8	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69726307	T	T	69726307	3	4	136	1	0	0	0	0	1	0	0	0	10455	971	34	3	2629	3	NFAT5	16	69726307	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	577651	69726307	20628446	356	121017											
DHX38	9785	broad.mit.edu	37	chr16	72133039	72133039	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagctgcatggccctgcagAtctgtctggggccgctgggg	18	11	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72133039	G	G	72133039	1	3	136	0	1	0	0	0	0	0	0	0	4551	348	12	5		5	DHX38	16	72133039	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	2406732	72133039	18221714	357	121018											
GAN	8139	broad.mit.edu	37	chr16	81410934	81410934	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattggagatcttgatacagGtaagagtgttacagtgattt	11	3	1	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81410934	C	C	81410934	5	2	136	1	0	0	0	0	0	0	1	0	6294	1275	44	4	1651	4	GAN	16	81410934	Splice_Site	SNP	G	TCGA-49-4494-01A-01D-1265-08	9277895	81410934	8943819	358	121019											
ZNF778	197320	broad.mit.edu	37	chr16	89294225	89294225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctacgaatgtaagcagtGtggcaaagccttcacagggc	11	11	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89294225	T	T	89294225	3	4	136	1	0	0	0	0	1	0	0	0	18280	1377	48	3	1463	3	ZNF778	16	89294225	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	7883291	89294225	1060528	359	121020											
OR1D2	4991	broad.mit.edu	37	chr17	2996310	2996310	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttccccaactctcttttaaCattaacaccagcaaatgttt	2	12	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2996310	G	G	2996310	1	3	136	0	1	0	0	0	0	0	0	0	11047	493	17	4		4	OR1D2	17	2996310	5'Flank	SNP	C	TCGA-49-4494-01A-01D-1265-08		2996310	78198900	360	121021											
C17orf85	55421	broad.mit.edu	37	chr17	3721736	3721736	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cggggctgcttgagagccggGagctcctcgtggtactctac	15	12	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3721736	C	C	3721736	2	2	136	1	0	0	0	0	0	0	0	1	1905	1161	41	4		4	C17orf85	17	3721736	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	725426	3721736	77473474	361	121022											
SLC25A11	8402	broad.mit.edu	37	chr17	4841288	4841288	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggggatccgacacccCctcccaggcccccagaatgg	10	19	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4841288	T	T	4841288	1	4	136	0	1	0	0	0	0	0	0	0	14587	638	22	4		4	SLC25A11	17	4841288	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	1119552	4841288	76353922	362	121023											
KIF1C	10749	broad.mit.edu	37	chr17	4910914	4910914	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagcaggtgcagggtagtGagtgctgtccctgatcgctc	16	10	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4910914	C	C	4910914	1	2	136	0	1	0	0	0	0	0	0	0	8355	1305	45	4		4	KIF1C	17	4910914	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	69626	4910914	76284296	363	121024											
C17orf74	201243	broad.mit.edu	37	chr17	7330250	7330250	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtatgactcctgggatcagCggcgtcgtggcacggagggc	17	10	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7330250	T	T	7330250	3	4	136	1	0	0	0	0	1	0	0	0	1896	759	27	4	950	4	C17orf74	17	7330250	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2419336	7330250	73864960	364	121025											
MPDU1	9526	broad.mit.edu	37	chr17	7489140	7489140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcttatctttctttccaGctgttgggttggggtggagg	14	7	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7489140	T	T	7489140	1	4	136	0	1	0	0	0	0	0	0	0	9815	986	34	3		3	MPDU1	17	7489140	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	158890	7489140	73706070	365	121026											
MYH4	4622	broad.mit.edu	37	chr17	10355258	10355258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcacaagttaatgaagacCttggctttggagacagtctc	12	8	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10355258	A	A	10355258	3	1	136	1	0	0	0	0	1	0	0	0	10131	695	24	2	2137	2	MYH4	17	10355258	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2866118	10355258	70839952	366	121027											
DNAH9	1770	broad.mit.edu	37	chr17	11593391	11593391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagctgcaccactatgagGatgaggtccggggcattgtg	14	10	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11593391	T	T	11593391	3	4	136	1	0	0	0	0	1	0	0	0	4648	1174	41	3	4330	3	DNAH9	17	11593391	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1238133	11593391	69601819	367	121028											
CCDC144NL	339184	broad.mit.edu	37	chr17	20769829	20769829	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaatacaaccagtcaccctCaacgtaccagcccaccctac	3	20	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20769829	T	T	20769829	1	4	136	0	1	0	0	0	0	0	0	0	2805	841	29	4		4	CCDC144NL	17	20769829	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	9176438	20769829	60425381	368	121029											
PHF12	57649	broad.mit.edu	37	chr17	27238324	27238324	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgtccaatcccccactgCtgagacaggtctggatttcg	9	15	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27238324	A	A	27238324	1	1	136	0	1	0	0	0	0	0	0	0	11918	812	28	3		3	PHF12	17	27238324	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	6468495	27238324	53956886	369	121030											
RHBDL3	162494	broad.mit.edu	37	chr17	30611731	30611731	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagttccggagtcttctGgagagccacagctccaagct	12	12	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30611731	A	A	30611731	2	1	136	1	0	0	0	0	0	0	0	1	13432	1335	47	4		4	RHBDL3	17	30611731	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	3373407	30611731	50583479	370	121031											
MYO19	80179	broad.mit.edu	37	chr17	34883509	34883509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgtgtctgccatgtacCgggcctgcaggcacctcagg	13	12	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34883509	A	A	34883509	3	1	136	1	0	0	0	0	1	0	0	0	10161	652	23	1	2887	1	MYO19	17	34883509	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	4271778	34883509	46311701	371	121032											
MRM1	79922	broad.mit.edu	37	chr17	34964761	34964761	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcttctccaagacccccaAgaaccctcagccaggtctga	7	17	3	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34964761	G	G	34964761	2	3	136	1	0	0	0	0	0	0	0	1	9865	69	3	5		5	MRM1	17	34964761	Silent	SNP	A	TCGA-49-4494-01A-01D-1265-08	81252	34964761	46230449	372	121033											
MRPL45	84311	broad.mit.edu	37	chr17	36462436	36462436	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggacatgaatggaggtcaGtgtaggctgtgaattatgga	15	3	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36462436	C	C	36462436	1	2	136	0	1	0	0	0	0	0	0	0	9903	1044	36	4		4	MRPL45	17	36462436	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1497675	36462436	44732774	373	121034											
DHX58	79132	broad.mit.edu	37	chr17	40257261	40257261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccacctgccagagtagCctcttctggttcagccctca	8	16	4	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40257261	A	A	40257261	1	1	136	0	1	0	0	0	0	0	0	0	4554	754	26	3		3	DHX58	17	40257261	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	3794825	40257261	40937949	374	121035											
MLX	6945	broad.mit.edu	37	chr17	40720536	40720536	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtgtagtgtccagagctaAtagcatcggttccaccagtg	12	9	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40720536	G	G	40720536	3	3	136	1	0	0	0	0	1	0	0	0	9728	101	4	5	300	5	MLX	17	40720536	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08	463275	40720536	40474674	375	121036											
ADAM11	4185	broad.mit.edu	37	chr17	42847339	42847339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccccttcctgctgccccCtctgtctcagccacctcctc	4	24	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42847339	A	A	42847339	1	1	136	0	1	0	0	0	0	0	0	0	235	696	24	2		2	ADAM11	17	42847339	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	2126803	42847339	38347871	376	121037											
IGF2BP1	10642	broad.mit.edu	37	chr17	47123148	47123148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcccgcctaggatggggaGggcctgtgggccagaaaata	16	9	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47123148	T	T	47123148	1	4	136	0	1	0	0	0	0	0	0	0	7643	1015	35	2		2	IGF2BP1	17	47123148	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	4275809	47123148	34072062	377	121038											
MMD	23531	broad.mit.edu	37	chr17	53471924	53471924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaaaaaaaataaaaagGgtttgatgttactctgcatg	9	3	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53471924	T	T	53471924	1	4	136	0	1	0	0	0	0	0	0	0	9736	1247	43	2		2	MMD	17	53471924	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6348776	53471924	27723286	378	121039											
TEX14	56155	broad.mit.edu	37	chr17	56700198	56700198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatggctacagagtgggacCcacccttacctgggtgctac	12	13	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56700198	A	A	56700198	1	1	136	0	1	0	0	0	0	0	0	0	15900	638	22	2		2	TEX14	17	56700198	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	3228274	56700198	24495012	379	121040											
RGS9	8787	broad.mit.edu	37	chr17	63149682	63149682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggaatagaccccacaGgcccaatacggcccacctcc	9	18	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63149682	T	T	63149682	1	4	136	0	1	0	0	0	0	0	0	0	13422	1015	35	2		2	RGS9	17	63149682	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6449484	63149682	18045528	380	121041											
PRKCA	5578	broad.mit.edu	37	chr17	64785039	64785040	+	Missense_Mutation	DNP	GG	TT	TT													agagcatgccttcttccggaGgatcgactgggaaaaactgg							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	64785040	TT	TT	64785039	3	4	136	1	0	0	0	0	1	0	0	0	12613	1000	35	2	1858	2	PRKCA	17	64785039	Missense_Mutation	DNP	GG	TCGA-49-4494-01A-01D-1265-08	1635357	64785039	16410171	381	121042											
UNC13D	201294	broad.mit.edu	37	chr17	73836332	73836332	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggatgagttggaactggaGgtggcactggcctcggtctg	17	7	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73836332	A	A	73836332	3	1	136	1	0	0	0	0	1	0	0	0	17113	1000	35	4	2532	4	UNC13D	17	73836332	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	9051293	73836332	7358878	382	121043											
TRIM65	201292	broad.mit.edu	37	chr17	73887248	73887248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgagtggtctgacgcgCgcacctcccagtagtggtgc	13	14	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73887248	A	A	73887248	3	1	136	1	0	0	0	0	1	0	0	0	16664	768	27	3	391	3	TRIM65	17	73887248	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	50916	73887248	7307962	383	121044											
ZNF521	25925	broad.mit.edu	37	chr18	22902131	22902131	+	Frame_Shift_Del	DEL	C	-	-													ctctccatcttcagtcttgtCttcaagtttacagttggggt					rs7235917		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22902131	-	-	22902131	7	5	136	1	0	1	0	1	0	0	0	0	18092	913	32	0	3898	0	ZNF521	18	22902131	Frame_Shift_Del	DEL	C	TCGA-49-4494-01A-01D-1265-08		22902131	55175117	384	121045											
DSC3	1825	broad.mit.edu	37	chr18	28605664	28605664	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaggaaagagtagctggaGtaagcatcagaagaaacata	13	4	1	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28605664	A	A	28605664	1	1	136	0	1	0	0	0	0	0	0	0	4807	1044	36	4		4	DSC3	18	28605664	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	5703533	28605664	49471584	385	121046											
CELF4	56853	broad.mit.edu	37	chr18	34854501	34854501	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcctgcgcccaccccGcccgctcctcggggcgcttt	11	21	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34854501	A	A	34854501	1	1	136	0	1	0	0	0	0	0	0	0	3248	1102	38	4		4	CELF4	18	34854501	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6248837	34854501	43222747	386	121047											
RNF165	494470	broad.mit.edu	37	chr18	44027602	44027602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcactatcagcattacCtagccactcctcgaatgcac	5	16	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44027602	A	A	44027602	3	1	136	1	0	0	0	0	1	0	0	0	13567	680	24	2	576	2	RNF165	18	44027602	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	9173101	44027602	34049646	387	121048											
SERPINB11	89778	broad.mit.edu	37	chr18	61390734	61390734	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacacctcacacacctctGtgcctcagtttgctcatctg	5	16	6	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61390734	T	T	61390734	1	4	136	0	1	0	0	0	0	0	0	0	14211	1392	48	3		3	SERPINB11	18	61390734	3'UTR	SNP	G	TCGA-49-4494-01A-01D-1265-08	17363132	61390734	16686514	388	121049											
ABCA7	10347	broad.mit.edu	37	chr19	1046335	1046335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgcagccgtccgcgtgCtcagcggcgccaacccccgg	14	18	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1046335	A	A	1046335	3	1	136	1	0	0	0	0	1	0	0	0	37	797	28	3	1598	3	ABCA7	19	1046335	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08		1046335	58082648	389	121050											
CELF5	60680	broad.mit.edu	37	chr19	3281249	3281249	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgacacggacaaggagcggaCgctccggcgcatgcagcaga	15	13	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3281249	T	T	3281249	3	4	136	1	0	0	0	0	1	0	0	0	3249	536	19	4	678	4	CELF5	19	3281249	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2234914	3281249	55847734	390	121051											
TMIGD2	126259	broad.mit.edu	37	chr19	4298087	4298087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtggttgaggctcacaGggtccagctgcagggtgaga	17	9	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4298087	T	T	4298087	3	4	136	1	0	0	0	0	1	0	0	0	16354	1000	35	2	562	2	TMIGD2	19	4298087	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1016838	4298087	54830896	391	121052											
ACER1	125981	broad.mit.edu	37	chr19	6306640	6306640	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggaaccacgagtgtccCgcaggtgcaagtcctgaccg	14	12	0	1	rs113618237		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6306640	T	T	6306640	1	4	136	0	1	0	0	0	0	0	0	0	138	667	23	4		4	ACER1	19	6306640	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	2008553	6306640	52822343	392	121053											
INSR	3643	broad.mit.edu	37	chr19	7132156	7132156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagtcagctgaggctgcCatggagacttacaatagtct	10	12	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7132156	T	T	7132156	1	4	136	0	1	0	0	0	0	0	0	0	7843	609	21	4		4	INSR	19	7132156	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	825516	7132156	51996827	393	121054											
MUC16	94025	broad.mit.edu	37	chr19	9005053	9005053	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgggattctgattagctGgggcagtggggaaggggaat	19	4	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9005053	A	A	9005053	1	1	136	0	1	0	0	0	0	0	0	0	10067	1363	47	4		4	MUC16	19	9005053	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	1872897	9005053	50123930	394	121055											
MUC16	94025	broad.mit.edu	37	chr19	9076674	9076674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatgtctgtgacagtccagGaatctgatgcagctgtggaa	12	8	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9076674	T	T	9076674	3	4	136	1	0	0	0	0	1	0	0	0	10067	1174	41	3	33079	3	MUC16	19	9076674	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	71621	9076674	50052309	395	121056											
MUC16	94025	broad.mit.edu	37	chr19	9077673	9077673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggcaggtgagagatgCtggtgctgccacttcctagg	16	9	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9077673	A	A	9077673	3	1	136	1	0	0	0	0	1	0	0	0	10067	797	28	3	34078	3	MUC16	19	9077673	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	999	9077673	50051310	396	121057											
MUC16	94025	broad.mit.edu	37	chr19	9083941	9083941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttggaaatttagaaggtGgcgtggacacagttgaaaac	12	5	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9083941	T	T	9083941	3	4	136	1	0	0	0	0	1	0	0	0	10067	1348	47	2	35985	2	MUC16	19	9083941	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	6268	9083941	50045042	397	121058											
SLC44A2	57153	broad.mit.edu	37	chr19	10742493	10742494	+	Intron	DNP	GG	TT	TT													acaggcaatcccctgtggttGgcctgatcatggaagagggt							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10742494	TT	TT	10742493	1	4	136	0	1	0	0	0	0	0	0	0	14750	1363	47	2		2	SLC44A2	19	10742493	Intron	DNP	GG	TCGA-49-4494-01A-01D-1265-08	1658552	10742493	48386490	398	121059											
EMR2	30817	broad.mit.edu	37	chr19	14857057	14857057	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttaccttgtgttccggaGggtggacacttcactattga	10	9	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14857057	A	A	14857057	3	1	136	1	0	0	0	0	1	0	0	0	5147	1000	35	4	317	4	EMR2	19	14857057	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	4114564	14857057	44271926	399	121060											
OR10H1	26539	broad.mit.edu	37	chr19	15918047	15918047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgtctccttccagagaCtggggacttttgggcttcag	13	9	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15918047	A	A	15918047	3	1	136	1	0	0	0	0	1	0	0	0	10999	564	20	3	159	3	OR10H1	19	15918047	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1060990	15918047	43210936	400	121061											
UNC13A	23025	broad.mit.edu	37	chr19	17760420	17760420	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagacacagagggacactgAgggcccagatgtccctattc	11	11	0	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17760420	T	T	17760420	1	4	136	0	1	0	0	0	0	0	0	0	17110	319	11	5		5	UNC13A	19	17760420	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	1842373	17760420	41368563	401	121062											
INSL3	3640	broad.mit.edu	37	chr19	17927620	17927620	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagctcaccagaccagacCctctgggcctcaggccactc	10	17	3	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17927620	A	A	17927620	1	1	136	0	1	0	0	0	0	0	0	0	7837	638	22	2		2	INSL3	19	17927620	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	167200	17927620	41201363	402	121063											
SLC5A5	6528	broad.mit.edu	37	chr19	17994525	17994525	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggagtcatcagcggcccCctgctgggagccttcatctt	12	13	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17994525	T	T	17994525	2	4	136	1	0	0	0	0	0	0	0	1	14782	610	22	4		4	SLC5A5	19	17994525	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	66905	17994525	41134458	403	121064											
ARRDC2	27106	broad.mit.edu	37	chr19	18121164	18121164	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggccttgccggagcggcctGagggtaagctcccaccctgc	15	15	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18121164	C	C	18121164	3	2	136	1	0	0	0	0	1	0	0	0	987	1291	45	4	1294	4	ARRDC2	19	18121164	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	126639	18121164	41007819	404	121065											
CRTC1	23373	broad.mit.edu	37	chr19	18888001	18888001	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacaggagagtccccccccAgcctctctaaagaactgacc	8	16	1	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18888001	T	T	18888001	3	4	136	1	0	0	0	0	1	0	0	0	3931	188	7	5	1820	5	CRTC1	19	18888001	Missense_Mutation	SNP	A	TCGA-49-4494-01A-01D-1265-08	766837	18888001	40240982	405	121066											
ZNF253	56242	broad.mit.edu	37	chr19	20003571	20003571	+	3'UTR	DEL	A	-	-													agataattcatactggagagAaaccctatgaatgtgatgaa							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20003571	-	-	20003571	6	5	136	0	1	1	0	1	0	0	0	0	17923	261	9	0		0	ZNF253	19	20003571	3'UTR	DEL	A	TCGA-49-4494-01A-01D-1265-08	1115570	20003571	39125412	406	121067											
C19orf2	8725	broad.mit.edu	37	chr19	30447612	30447612	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgggggaagtgagcatacAcagacctcatcttgtaatgg	13	7	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30447612	T	T	30447612	1	4	136	0	1	0	0	0	0	0	0	0	1930	174	6	5		5	C19orf2	19	30447612	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	10444041	30447612	28681371	407	121068											
ZNF536	9745	broad.mit.edu	37	chr19	31025803	31025803	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtccagcaaccagcgctGcttcgcgacagaagcctggg	14	14	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31025803	T	T	31025803	2	4	136	1	0	0	0	0	0	0	0	1	18101	1306	46	3		3	ZNF536	19	31025803	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	578191	31025803	28103180	408	121069											
LSM14A	26065	broad.mit.edu	37	chr19	34706112	34706112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctcagcccacttacctGctccagcagctgttgggaga	10	16	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34706112	T	T	34706112	3	4	136	1	0	0	0	0	1	0	0	0	9141	1319	46	3	640	3	LSM14A	19	34706112	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	3680309	34706112	24422871	409	121070											
HAUS5	23354	broad.mit.edu	37	chr19	36113676	36113676	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgggaaacagaaaagtcAggactcaagctgggggcctg	16	7	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36113676	G	G	36113676	1	3	136	0	1	0	0	0	0	0	0	0	7035	203	7	5		5	HAUS5	19	36113676	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	1407564	36113676	23015307	410	121071											
ZFP14	57677	broad.mit.edu	37	chr19	36832235	36832235	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccttttctccattatgaaCgatctgatactcagtaagaa	5	10	3	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36832235	G	G	36832235	3	3	136	1	0	0	0	0	1	0	0	0	17765	536	19	4	1112	4	ZFP14	19	36832235	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	718559	36832235	22296748	411	121072											
RYR1	6261	broad.mit.edu	37	chr19	39015859	39015859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgtcgtcggcagttggGgagggagtgcctggtgtcca	20	7	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39015859	T	T	39015859	1	4	136	0	1	0	0	0	0	0	0	0	13879	1247	43	2		2	RYR1	19	39015859	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	2183624	39015859	20113124	412	121073											
PSG3	5671	broad.mit.edu	37	chr19	43233410	43233410	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgatagctgaaacttccCattaattgtccaagaatatt	5	9	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43233410	T	T	43233410	3	4	136	1	0	0	0	0	1	0	0	0	12762	594	21	4	186	4	PSG3	19	43233410	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	4217551	43233410	15895573	413	121074											
ETHE1	23474	broad.mit.edu	37	chr19	44012091	44012091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtccaggtccccagctgCtcacctatctgctgaggttt	10	13	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44012091	A	A	44012091	1	1	136	0	1	0	0	0	0	0	0	0	5314	812	28	3		3	ETHE1	19	44012091	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	778681	44012091	15116892	414	121075											
RTN2	6253	broad.mit.edu	37	chr19	45992753	45992753	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcagaggagggagaccatCaggcctgtgaagaccactcc	14	11	1	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45992753	T	T	45992753	2	4	136	1	0	0	0	0	0	0	0	1	13837	813	29	4		4	RTN2	19	45992753	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	1980662	45992753	13136230	415	121076											
SIGLEC9	27180	broad.mit.edu	37	chr19	51628373	51628373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccttctcctacccctcgCatggctggatttaccctggc	8	17	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51628373	A	A	51628373	3	1	136	1	0	0	0	0	1	0	0	0	14428	710	25	3	144	3	SIGLEC9	19	51628373	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	5635620	51628373	7500610	416	121077											
SIGLEC12	89858	broad.mit.edu	37	chr19	51994930	51994930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctcggagtactcatagcCgatggcctcctgttcctgtg	11	12	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51994930	T	T	51994930	3	4	136	1	0	0	0	0	1	0	0	0	14421	652	23	4	38	4	SIGLEC12	19	51994930	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	366557	51994930	7134053	417	121078											
SIGLEC5	8778	broad.mit.edu	37	chr19	52115767	52115767	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatatgttgccttgggattTattttgaatgtaagttggac	10	3	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52115767	A	A	52115767	1	1	136	0	1	0	0	0	0	0	0	0	14424	1769	61	5		5	SIGLEC5	19	52115767	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	120837	52115767	7013216	418	121079											
ZNF880	400713	broad.mit.edu	37	chr19	52876489	52876489	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggaacctggtctttctGggtgaggataatgtcccttc	11	9	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52876489	T	T	52876489	2	4	136	1	0	0	0	0	0	0	0	1	18326	1362	47	2		2	ZNF880	19	52876489	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	760722	52876489	6252494	419	121080											
ZNF528	84436	broad.mit.edu	37	chr19	52905228	52905228	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaaagagacatattatgcAaggaagcaacttggaagagg	11	6	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52905228	T	T	52905228	1	4	136	0	1	0	0	0	0	0	0	0	18096	145	5	5		5	ZNF528	19	52905228	5'UTR	SNP	A	TCGA-49-4494-01A-01D-1265-08	28739	52905228	6223755	420	121081											
ZNF665	79788	broad.mit.edu	37	chr19	53678823	53678823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catccttgaatgtcaactgtCcctaaaatgaaaaacacatt	4	10	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53678823	A	A	53678823	3	1	136	1	0	0	0	0	1	0	0	0	18200	869	30	3	2027	3	ZNF665	19	53678823	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	773595	53678823	5450160	421	121082											
LILRB1	10859	broad.mit.edu	37	chr19	55146353	55146353	+	Intron	DEL	C	-	-													caggccaatcgacagtcagtCccatctacaaatgtaaagtg							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55146353	-	-	55146353	6	5	136	0	1	1	0	1	0	0	0	0	8862	870	30	0		0	LILRB1	19	55146353	Intron	DEL	C	TCGA-49-4494-01A-01D-1265-08	1467530	55146353	3982630	422	121083											
FCAR	2204	broad.mit.edu	37	chr19	55396961	55396961	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaacatccagggtccacAgccctggtgtgatttttttc	10	10	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55396961	T	T	55396961	1	4	136	0	1	0	0	0	0	0	0	0	5830	203	7	5		5	FCAR	19	55396961	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	250608	55396961	3732022	423	121084											
CCDC106	29903	broad.mit.edu	37	chr19	56160839	56160839	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagacccagctgcacatgGctctggagaggaactcctgg	12	12	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56160839	T	T	56160839	3	4	136	1	0	0	0	0	1	0	0	0	2767	1203	42	3	212	3	CCDC106	19	56160839	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	763878	56160839	2968144	424	121085											
NLRP4	147945	broad.mit.edu	37	chr19	56363727	56363727	+	Splice_Site	SNP	G	T	T													ggtcatgagggagagaacagGtgagggagtctgggaagggg							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56363727	T	T	56363727	5	4	136	1	0	0	0	0	0	0	1	0	10574	1275	44	3	283	3	NLRP4	19	56363727	Splice_Site	SNP	G	TCGA-49-4494-01A-01D-1265-08	202888	56363727	2765256	425	121086	528	2									
NLRP4	147945	broad.mit.edu	37	chr19	56363731	56363731	+	Intron	SNP	G	T	T													atgagggagagaacaggtgaGggagtctgggaagggggaag							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56363731	T	T	56363731	1	4	136	0	1	0	0	0	0	0	0	0	10574	1015	35	2		2	NLRP4	19	56363731	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	4	56363731	2765252	426	121087	528	2									
ZNF418	147686	broad.mit.edu	37	chr19	58439201	58439201	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaactatcatacaatttattCccccatgcctcacacctgtg	4	14	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58439201	T	T	58439201	2	4	136	1	0	0	0	0	0	0	0	1	18022	842	30	4		4	ZNF418	19	58439201	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	2075470	58439201	689782	427	121088											
CSNK2A1	1457	broad.mit.edu	37	chr20	480448	480448	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaccatctcagctctggCgggccttgctaacacctact	7	15	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	480448	T	T	480448	1	4	136	0	1	0	0	0	0	0	0	0	3991	783	27	4		4	CSNK2A1	20	480448	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08		480448	62545072	428	121089											
MKKS	8195	broad.mit.edu	37	chr20	10393021	10393021	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttagtatgtgaacaataCaggatcttttccagaaacct	6	7	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10393021	G	G	10393021	1	3	136	0	1	0	0	0	0	0	0	0	9693	493	17	4		4	MKKS	20	10393021	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	9912573	10393021	52632499	429	121090											
CTNNBL1	56259	broad.mit.edu	37	chr20	36405996	36405996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgtatcagtgttagacGgctgtaaaatctgacagtta	10	6	2	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36405996	T	T	36405996	1	4	136	0	1	0	0	0	0	0	0	0	4052	1131	39	1		1	CTNNBL1	20	36405996	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	26012975	36405996	26619524	430	121091											
RIMS4	140730	broad.mit.edu	37	chr20	43438829	43438829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttacctgcgtcctcgtcGtcgaaggagttcatgcacgg	12	13	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43438829	T	T	43438829	3	4	136	1	0	0	0	0	1	0	0	0	13481	1136	40	3	749	3	RIMS4	20	43438829	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	7032833	43438829	19586691	431	121092											
EYA2	2139	broad.mit.edu	37	chr20	45607270	45607270	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtcagaggttataagcaagGatgaggtgaggcgggcaggt	18	5	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45607270	T	T	45607270	1	4	136	0	1	0	0	0	0	0	0	0	5372	1189	41	3		3	EYA2	20	45607270	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	2168441	45607270	17418250	432	121093											
CYP24A1	1591	broad.mit.edu	37	chr20	52781004	52781004	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttacctgatttgaaaatGgtgtcccaggccagagtgtg	11	9	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52781004	T	T	52781004	2	4	136	1	0	0	0	0	0	0	0	1	4187	1335	47	2		2	CYP24A1	20	52781004	Silent	SNP	G	TCGA-49-4494-01A-01D-1265-08	7173734	52781004	10244516	433	121094											
TAF4	6874	broad.mit.edu	37	chr20	60575636	60575636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatattcttctctgcaaaggCgcttggaggaggaaggtttc	12	7	2	0	rs149271691	byFrequency	TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60575636	A	A	60575636	2	1	136	1	0	0	0	0	0	0	0	1	15645	755	27	3		3	TAF4	20	60575636	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	7794632	60575636	2449884	434	121095											
SLCO4A1	28231	broad.mit.edu	37	chr20	61296511	61296511	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacagagtcttcaagggcatCttctagaaagacccagacag	9	10	4	4			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61296511	T	T	61296511	1	4	136	0	1	0	0	0	0	0	0	0	14843	928	32	4		4	SLCO4A1	20	61296511	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	720875	61296511	1729009	435	121096											
EEF1A2	1917	broad.mit.edu	37	chr20	62126148	62126148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcccgccccgccctagcCgccactcacgttgggggagg	15	17	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62126148	A	A	62126148	1	1	136	0	1	0	0	0	0	0	0	0	4964	667	23	1		1	EEF1A2	20	62126148	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	829637	62126148	899372	436	121097											
BAGE2	85319	broad.mit.edu	37	chr21	11038591	11038591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaaataatggctgaaaCacataatcaacattacactg	4	7	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11038591	A	A	11038591	1	1	136	0	1	0	0	0	0	0	0	0	1297	493	17	3		3	BAGE2	21	11038591	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08		11038591	37091304	437	121098											
TMPRSS15	5651	broad.mit.edu	37	chr21	19713778	19713778	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagttggttctggataaaGactcccattgcaaatcccat	7	10	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19713778	T	T	19713778	3	4	136	1	0	0	0	0	1	0	0	0	16369	942	33	3	1595	3	TMPRSS15	21	19713778	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	8675187	19713778	28416117	438	121099											
RNF160	26046	broad.mit.edu	37	chr21	30343134	30343134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaattaaaagagaaaaCatataggctctcaaaaagaa	5	6	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30343134	A	A	30343134	1	1	136	0	1	0	0	0	0	0	0	0	13566	493	17	3		3	RNF160	21	30343134	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	10629356	30343134	17786761	439	121100											
GRIK1	2897	broad.mit.edu	37	chr21	31311771	31311771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaggagtgcccagctggtGtccctggtccagagcccggg	16	12	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31311771	T	T	31311771	3	4	136	1	0	0	0	0	1	0	0	0	6839	1368	48	3	2936	3	GRIK1	21	31311771	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	968637	31311771	16818124	440	121101											
MX2	4600	broad.mit.edu	37	chr21	42751929	42751929	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaactgaggatatttgggGaacctctcgctcaggaatcg	13	8	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42751929	T	T	42751929	1	4	136	0	1	0	0	0	0	0	0	0	10092	1189	41	3		3	MX2	21	42751929	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	11440158	42751929	5377966	441	121102											
KRTAP10-2	386679	broad.mit.edu	37	chr21	45970557	45970557	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcctgagcccggctggcCctgggggacatggccatcag	18	13	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45970557	A	A	45970557	1	1	136	0	1	0	0	0	0	0	0	0	8580	638	22	2		2	KRTAP10-2	21	45970557	3'UTR	SNP	C	TCGA-49-4494-01A-01D-1265-08	3218628	45970557	2159338	442	121103											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45993646	45993646	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatccaccatgtccgtctGctccagcgacctgagctaca	8	16	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45993646	A	A	45993646	3	1	136	1	0	0	0	0	1	0	0	0	8582	1319	46	4	13	4	KRTAP10-4	21	45993646	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	23089	45993646	2136249	443	121104											
COL18A1	80781	broad.mit.edu	37	chr21	46888135	46888135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgcacagccacctcacCagctgtctttctttttgcag	7	15	3	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46888135	A	A	46888135	1	1	136	0	1	0	0	0	0	0	0	0	3707	609	21	2		2	COL18A1	21	46888135	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	894489	46888135	1241760	444	121105											
CCT8L2	150160	broad.mit.edu	37	chr22	17072423	17072423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcctggcctctggggagGgagcagacgaggcagcagag	18	10	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17072423	T	T	17072423	3	4	136	1	0	0	0	0	1	0	0	0	2991	1232	43	2	659	2	CCT8L2	22	17072423	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08		17072423	34232143	445	121106											
MICAL3	57553	broad.mit.edu	37	chr22	18301821	18301821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcttctctttggggagCaaaggctcagggaaaaggcg	16	7	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18301821	A	A	18301821	3	1	136	1	0	0	0	0	1	0	0	0	9664	709	25	3	2430	3	MICAL3	22	18301821	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1229398	18301821	33002745	446	121107											
CLTCL1	8218	broad.mit.edu	37	chr22	19226636	19226636	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttctacgaacagggctttCccagctcacacgccaaagcc	7	16	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19226636	A	A	19226636	1	1	136	0	1	0	0	0	0	0	0	0	3599	870	30	3		3	CLTCL1	22	19226636	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	924815	19226636	32077930	447	121108											
SNRPD3	6634	broad.mit.edu	37	chr22	24964111	24964111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccaaggctcaggggctGgccgaggaaaagctgctatt	13	9	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24964111	T	T	24964111	3	4	136	1	0	0	0	0	1	0	0	0	14980	1348	47	2	292	2	SNRPD3	22	24964111	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	5737475	24964111	26340455	448	121109											
HPS4	89781	broad.mit.edu	37	chr22	26860631	26860631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagcatccgttctccttcCtgccatctggacaagcttcg	7	15	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26860631	A	A	26860631	3	1	136	1	0	0	0	0	1	0	0	0	7408	681	24	2	1177	2	HPS4	22	26860631	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	1896520	26860631	24443935	449	121110											
ZNRF3	84133	broad.mit.edu	37	chr22	29440884	29440884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgacgcagtcaggtagtGcctctgtgtgtagcccgtga	14	11	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29440884	T	T	29440884	1	4	136	0	1	0	0	0	0	0	0	0	18342	1334	46	3		3	ZNRF3	22	29440884	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	2580253	29440884	21863682	450	121111											
ISX	91464	broad.mit.edu	37	chr22	35478330	35478330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgtccatggtgggtgagGgtcggtctagaggcagagga	18	6	1	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35478330	T	T	35478330	1	4	136	0	1	0	0	0	0	0	0	0	7935	1247	43	2		2	ISX	22	35478330	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	6037446	35478330	15826236	451	121112											
SSTR3	6753	broad.mit.edu	37	chr22	37602771	37602771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctccctgctctcctcccCatcctcctcctcctcatcct	1	26	2	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37602771	A	A	37602771	3	1	136	1	0	0	0	0	1	0	0	0	15317	594	21	2	188	2	SSTR3	22	37602771	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	2124441	37602771	13701795	452	121113											
KCNJ4	3761	broad.mit.edu	37	chr22	38822911	38822911	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccggatgatgcccgcctcCtccttggaacccgcctccag	9	18	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38822911	T	T	38822911	2	4	136	1	0	0	0	0	0	0	0	1	8123	680	24	4		4	KCNJ4	22	38822911	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	1220140	38822911	12481655	453	121114											
TAB1	10454	broad.mit.edu	37	chr22	39772214	39772214	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcacctgggtgagtacagcCaccgcgcaccagcccacact	9	17	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39772214	G	G	39772214	1	3	136	0	1	0	0	0	0	0	0	0	15614	609	21	4		4	TAB1	22	39772214	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	949303	39772214	11532352	454	121115											
PARVG	64098	broad.mit.edu	37	chr22	44579292	44579292	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagctctcaaaaggtgTgtgcccacgcaggtctgagg	16	9	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44579292	A	A	44579292	1	1	136	0	1	0	0	0	0	0	0	0	11564	1711	59	5		5	PARVG	22	44579292	Intron	SNP	T	TCGA-49-4494-01A-01D-1265-08	4807078	44579292	6725274	455	121116											
ALG12	79087	broad.mit.edu	37	chr22	50304035	50304035	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcccgactcaggggagcCcctgcccggcaccatgggtg	14	16	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50304035	T	T	50304035	1	4	136	0	1	0	0	0	0	0	0	0	514	638	22	4		4	ALG12	22	50304035	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	5724743	50304035	1000531	456	121117											
CPT1B	1375	broad.mit.edu	37	chr22	51012810	51012810	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgttgaacatcctctccatCtggtaggagcacataggcac	10	11	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51012810	T	T	51012810	2	4	136	1	0	0	0	0	0	0	0	1	3864	912	32	4		4	CPT1B	22	51012810	Silent	SNP	C	TCGA-49-4494-01A-01D-1265-08	708775	51012810	291756	457	121118											
CSF2RA	1438	broad.mit.edu	37	chrX	1413052	1413052	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacctggacccagtgtagtCaaagaggtgtccctactcca	9	14	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1413052	A	A	1413052	1	1	136	0	1	0	0	0	0	0	0	0	3968	841	29	3		3	CSF2RA	23	1413052	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08		1413052	153857508	458	121119											
TBL1X	6907	broad.mit.edu	37	chrX	9661112	9661112	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagtgtacctggatcctcgGagaggctctccgagctgctt	12	13	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9661112	T	T	9661112	1	4	136	0	1	0	0	0	0	0	0	0	15761	1189	41	3		3	TBL1X	23	9661112	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	8248060	9661112	145609448	459	121120											
PPEF1	5475	broad.mit.edu	37	chrX	18748374	18748374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggccagacaacactatgCcctcaccatcttccagtcca	6	16	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18748374	A	A	18748374	3	1	136	1	0	0	0	0	1	0	0	0	12403	739	26	3	128	3	PPEF1	23	18748374	Missense_Mutation	SNP	C	TCGA-49-4494-01A-01D-1265-08	9087262	18748374	136522186	460	121121											
CXorf22	170063	broad.mit.edu	37	chrX	35993959	35993959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtataatcgtcagaattGttgtgctcagtttcaatggc	9	6	3	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35993959	T	T	35993959	3	4	136	1	0	0	0	0	1	0	0	0	4135	1377	48	3	2700	3	CXorf22	23	35993959	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	17245585	35993959	119276601	461	121122											
RBM10	8241	broad.mit.edu	37	chrX	47034492	47034492	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggatggaagccaatcagGttgctttgccgcacttgaac	12	9	1	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47034492	T	T	47034492	5	4	136	1	0	0	0	0	0	0	1	0	13219	1275	44	3	595	3	RBM10	23	47034492	Splice_Site	SNP	G	TCGA-49-4494-01A-01D-1265-08	11040533	47034492	108236068	462	121123											
DGKK	139189	broad.mit.edu	37	chrX	50120969	50120969	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcatttataaccagcatctCaagtgactctgatgccaggg	9	10	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50120969	A	A	50120969	1	1	136	0	1	0	0	0	0	0	0	0	4512	841	29	3		3	DGKK	23	50120969	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	3086477	50120969	105149591	463	121124											
TSPYL2	64061	broad.mit.edu	37	chrX	53114870	53114870	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgcccctgactattatgcAgtggaagacattttcagcga	10	10	1	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53114870	C	C	53114870	2	2	136	1	0	0	0	0	0	0	0	1	16785	175	7	5		5	TSPYL2	23	53114870	Silent	SNP	A	TCGA-49-4494-01A-01D-1265-08	2993901	53114870	102155690	464	121125											
DACH2	117154	broad.mit.edu	37	chrX	85950221	85950221	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaactgggtgtgttgaacAaaatactatccaagacctac	7	9	0	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85950221	G	G	85950221	1	3	136	0	1	0	0	0	0	0	0	0	4254	145	5	5		5	DACH2	23	85950221	Intron	SNP	A	TCGA-49-4494-01A-01D-1265-08	32835351	85950221	69320339	465	121126											
TCEAL2	140597	broad.mit.edu	37	chrX	101382384	101382384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggcgtttttgtggatGcaaagaaatttacaggaccc	13	6	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101382384	T	T	101382384	3	4	136	1	0	0	0	0	1	0	0	0	15793	1319	46	3	584	3	TCEAL2	23	101382384	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	15432163	101382384	53888176	466	121127											
GLRA4	441509	broad.mit.edu	37	chrX	102979534	102979534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtcacgttcacgggtgGgcctgagggtagcaaagcac	16	10	2	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102979534	T	T	102979534	3	4	136	1	0	0	0	0	1	0	0	0	6521	1232	43	2	1171	2	GLRA4	23	102979534	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	1597150	102979534	52291026	467	121128											
GUCY2F	2986	broad.mit.edu	37	chrX	108635384	108635384	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactggtcccccttcatgcCacatacacctgctaaaaata	4	15	1	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108635384	A	A	108635384	1	1	136	0	1	0	0	0	0	0	0	0	6963	609	21	2		2	GUCY2F	23	108635384	Intron	SNP	C	TCGA-49-4494-01A-01D-1265-08	5655850	108635384	46635176	468	121129											
UPF3B	65109	broad.mit.edu	37	chrX	118969116	118969116	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaagaccaaaaatgtgagGgcacggtaaatgacaacttg	10	6	0	3			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969116	A	A	118969116	1	1	136	0	1	0	0	0	0	0	0	0	17132	1247	43	4		4	UPF3B	23	118969116	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	10333732	118969116	36301444	469	121130											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299021	125299021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctgatggacaggagcctgGatagtgtgctccgggctttc	15	10	0	1			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125299021	T	T	125299021	3	4	136	1	0	0	0	0	1	0	0	0	4298	1174	41	3	508	3	DCAF12L2	23	125299021	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	6329905	125299021	29971539	470	121131											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299047	125299047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctccgggctttccacagGtggaagtagccgtccaagga	14	11	0	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125299047	T	T	125299047	3	4	136	1	0	0	0	0	1	0	0	0	4298	1252	44	3	534	3	DCAF12L2	23	125299047	Missense_Mutation	SNP	G	TCGA-49-4494-01A-01D-1265-08	26	125299047	29971513	471	121132											
SPANXN3	139067	broad.mit.edu	37	chrX	142596610	142596610	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatcatcgccatcagtggtGatgatttgtccaatttggtt	9	7	2	2			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142596610	A	A	142596610	1	1	136	0	1	0	0	0	0	0	0	0	15108	1305	45	4		4	SPANXN3	23	142596610	3'UTR	SNP	G	TCGA-49-4494-01A-01D-1265-08	17297563	142596610	12673950	472	121133											
AFF2	2334	broad.mit.edu	37	chrX	148059835	148059835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagcagtcttcttaacaGtttataaagtttcactaagc	5	8	4	0			TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148059835	T	T	148059835	1	4	136	0	1	0	0	0	0	0	0	0	357	1044	36	3		3	AFF2	23	148059835	Intron	SNP	G	TCGA-49-4494-01A-01D-1265-08	5463225	148059835	7210725	473	121134											
MAGEA3	4102	broad.mit.edu	37	chrX	151935379	151935379	+	Frame_Shift_Del	DEL	C	-	-													cataacatgcaggatcactgCcggggacctgccggtactcc							TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151935379	-	-	151935379	7	5	136	1	0	1	0	1	0	0	0	0	9257	739	26	0	160	0	MAGEA3	23	151935379	Frame_Shift_Del	DEL	C	TCGA-49-4494-01A-01D-1265-08	3875544	151935379	3335181	474	121135											
MEGF6	1953	broad.mit.edu	37	chr1	3418614	3418615	+	Intron	DEL	CG	-	-													tcctggcgagtgtgccccccCggcgcctcctcacatgggct					rs58330456		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3418615	-	-	3418614	6	5	137	0	1	1	0	1	0	0	0	0	9555	667	23	0		0	MEGF6	1	3418614	Intron	DEL	CG	TCGA-49-4501-01A-01D-1265-08		3418614	245832007	1	121136											
CCDC27	148870	broad.mit.edu	37	chr1	3680249	3680249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcttgctcctgctcacCgcctctgcctctgtgcccag	8	20	3	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3680249	T	T	3680249	1	4	137	0	1	0	0	0	0	0	0	0	2828	667	23	4		4	CCDC27	1	3680249	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	261635	3680249	245570372	2	121137											
SPEN	23013	broad.mit.edu	37	chr1	16260282	16260282	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagtctactccatctcCagctcttcccccagacacaa	5	18	4	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16260282	T	T	16260282	3	4	137	1	0	0	0	0	1	0	0	0	15156	594	21	4	7589	4	SPEN	1	16260282	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	12580033	16260282	232990339	3	121138											
GRHL3	57822	broad.mit.edu	37	chr1	24663569	24663569	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctgtgtttctctgcagtCgatgctcttcccagatatcc	10	12	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24663569	T	T	24663569	3	4	137	1	0	0	0	0	1	0	0	0	6831	898	31	4	668	4	GRHL3	1	24663569	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	8403287	24663569	224587052	4	121139											
AIM1L	55057	broad.mit.edu	37	chr1	26655271	26655271	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacatggttgttgaagccctCggcttgcaggctccgcacct	11	14	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26655271	T	T	26655271	3	4	137	1	0	0	0	0	1	0	0	0	431	893	31	4	597	4	AIM1L	1	26655271	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	1991702	26655271	222595350	5	121140											
GMEB1	10691	broad.mit.edu	37	chr1	29018309	29018309	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcctttttatcttccactAtatcagttttatttatttat	1	8	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29018309	C	C	29018309	1	2	137	0	1	0	0	0	0	0	0	0	6551	464	16	5		5	GMEB1	1	29018309	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	2363038	29018309	220232312	6	121141											
YRDC	79693	broad.mit.edu	37	chr1	38270003	38270003	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatgatgccaaactttccGggcacagacaaatcaaccac	7	13	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38270003	T	T	38270003	2	4	137	1	0	0	0	0	0	0	0	1	17621	1103	39	1		1	YRDC	1	38270003	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	9251694	38270003	210980618	7	121142											
KIF2C	11004	broad.mit.edu	37	chr1	45220278	45220278	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccccagtgctttgtaCctggcttctcaacccagagc	7	16	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45220278	T	T	45220278	1	4	137	0	1	0	0	0	0	0	0	0	8369	522	18	4		4	KIF2C	1	45220278	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	6950275	45220278	204030343	8	121143											
GPBP1L1	60313	broad.mit.edu	37	chr1	46120493	46120493	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggaacagggagggctggtGccaagaatctagaatagtaa	15	6	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46120493	A	A	46120493	3	1	137	1	0	0	0	0	1	0	0	0	6661	1319	46	4	1257	4	GPBP1L1	1	46120493	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	900215	46120493	203130128	9	121144											
ZFYVE9	9372	broad.mit.edu	37	chr1	52626271	52626271	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatacattcaaaggaatagtCcatagagtcgggcaccgtgt	10	8	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52626271	T	T	52626271	1	4	137	0	1	0	0	0	0	0	0	0	17797	870	30	4		4	ZFYVE9	1	52626271	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	6505778	52626271	196624350	10	121145											
C8B	732	broad.mit.edu	37	chr1	57409395	57409395	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcattcagaatacctctgCatttgcctacagacacaccc	4	14	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57409395	T	T	57409395	3	4	137	1	0	0	0	0	1	0	0	0	2442	710	25	4	587	4	C8B	1	57409395	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	4783124	57409395	191841226	11	121146											
C1orf173	127254	broad.mit.edu	37	chr1	75038612	75038612	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcctctccctcctccgAtgtcgctgcctctctcaggg	8	19	4	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75038612	T	T	75038612	3	4	137	1	0	0	0	0	1	0	0	0	2034	333	12	5	1814	5	C1orf173	1	75038612	Missense_Mutation	SNP	A	TCGA-49-4501-01A-01D-1265-08	17629217	75038612	174212009	12	121147											
MYBPHL	343263	broad.mit.edu	37	chr1	109838959	109838959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggggcttcagagaagtctCgttgggcaaaccccttggtc	13	10	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109838959	T	T	109838959	3	4	137	1	0	0	0	0	1	0	0	0	10109	884	31	4	312	4	MYBPHL	1	109838959	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	34800347	109838959	139411662	13	121148											
MAN1A2	10905	broad.mit.edu	37	chr1	117944999	117945019	+	In_Frame_Del	DEL	TAGGAATACGTGGTGGAGACC	-	-													agtccctattcccaaccttgTaggaatacgtggtggagacc							TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117945019	-	-	117944999	7	5	137	1	0	1	0	1	0	0	0	0	9303	1638	57	0	500	0	MAN1A2	1	117944999	In_Frame_Del	DEL	TAGGAATACGTGGTGGAGACC	TCGA-49-4501-01A-01D-1265-08	8106040	117944999	131305622	14	121149											
NBPF9	400818	broad.mit.edu	37	chr1	144811983	144811983	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctataggctcaccatcacGaaagtgatgaacgacgtcct	8	11	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144811983	A	A	144811983	1	1	137	0	1	0	0	0	0	0	0	0	10294	1073	37	4		4	NBPF9	1	144811983	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	26866984	144811983	104438638	15	121150											
UBAP2L	9898	broad.mit.edu	37	chr1	154218863	154218863	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagtatggtgagtaggaaAcgtggtttatcctaatcaaa	10	6	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154218863	C	C	154218863	1	2	137	0	1	0	0	0	0	0	0	0	16964	58	2	5		5	UBAP2L	1	154218863	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	9406880	154218863	95031758	16	121151											
SSR2	6746	broad.mit.edu	37	chr1	155979226	155979226	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagtggccaagggctaagaGagaagagattgcatttaaga	13	4	0	4			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155979226	C	C	155979226	1	2	137	0	1	0	0	0	0	0	0	0	15309	957	33	4		4	SSR2	1	155979226	3'UTR	SNP	G	TCGA-49-4501-01A-01D-1265-08	1760363	155979226	93271395	17	121152											
FCGR3A	2214	broad.mit.edu	37	chr1	161514360	161514360	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggggacctcctggtgatCaccaggagggaaccacatat	12	10	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161514360	T	T	161514360	1	4	137	0	1	0	0	0	0	0	0	0	5841	841	29	4		4	FCGR3A	1	161514360	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	5535134	161514360	87736261	18	121153											
KLHL20	27252	broad.mit.edu	37	chr1	173703050	173703050	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgtggtgctagttgtGggcgccaagaagatatatgc	15	5	0	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173703050	A	A	173703050	2	1	137	1	0	0	0	0	0	0	0	1	8446	1335	47	4		4	KLHL20	1	173703050	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	12188690	173703050	75547571	19	121154											
RC3H1	149041	broad.mit.edu	37	chr1	173951743	173951743	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acattctttaaaagaataaaGaaaaattgctgagattttct	5	4	2	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173951743	A	A	173951743	1	1	137	0	1	0	0	0	0	0	0	0	13274	957	33	4		4	RC3H1	1	173951743	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	248693	173951743	75298878	20	121155											
XPR1	9213	broad.mit.edu	37	chr1	180775220	180775220	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgaattttacagggtttcGaaaaatcctgaaaaagcatg	8	6	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180775220	A	A	180775220	3	1	137	1	0	0	0	0	1	0	0	0	17578	1058	37	4	488	4	XPR1	1	180775220	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	6823477	180775220	68475401	21	121156											
CFH	3075	broad.mit.edu	37	chr1	196684873	196684873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagtgtgtggttacaatgGttggtctgatttacccatat	10	6	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196684873	T	T	196684873	3	4	137	1	0	0	0	0	1	0	0	0	3313	1261	44	3	1730	3	CFH	1	196684873	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	15909653	196684873	52565748	22	121157											
KDM5B	10765	broad.mit.edu	37	chr1	202704717	202704717	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatcgaggacacagcaccTaatgtgggacaaggcacaac	10	12	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202704717	C	C	202704717	5	2	137	1	0	0	0	0	0	0	1	0	8204	1536	53	5	1395	5	KDM5B	1	202704717	Splice_Site	SNP	T	TCGA-49-4501-01A-01D-1265-08	6019844	202704717	46545904	23	121158											
HHAT	55733	broad.mit.edu	37	chr1	210591515	210591515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagatgcagcagcaggagcaTgactccctgaaggccagcct	12	12	0	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210591515	G	G	210591515	3	3	137	1	0	0	0	0	1	0	0	0	7156	1461	51	5	822	5	HHAT	1	210591515	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08	7886798	210591515	38659106	24	121159											
ESRRG	2104	broad.mit.edu	37	chr1	216741463	216741463	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcaaagacaggcaccgGcttactattaaggtagctat	11	8	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216741463	A	A	216741463	1	1	137	0	1	0	0	0	0	0	0	0	5304	1218	42	4		4	ESRRG	1	216741463	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	6149948	216741463	32509158	25	121160											
SOS1	6654	broad.mit.edu	37	chr2	39240585	39240585	+	Intron	DEL	A	-	-													acatataaaactaggcacctAaaaaaaaaaacatacctctt							TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39240585	-	-	39240585	6	5	137	0	1	1	0	1	0	0	0	0	15050	377	13	0		0	SOS1	2	39240585	Intron	DEL	A	TCGA-49-4501-01A-01D-1265-08		39240585	203958788	26	121161											
RTN4	57142	broad.mit.edu	37	chr2	55200865	55200865	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacacttctcatttttgtAagacattgaaaatgggcact	6	8	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55200865	G	G	55200865	1	3	137	0	1	0	0	0	0	0	0	0	13839	377	13	5		5	RTN4	2	55200865	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	15960280	55200865	187998508	27	121162											
C2orf63	130162	broad.mit.edu	37	chr2	55435713	55435713	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtatgttattcacaaagaaTctatgaaaaaatataattct	5	4	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55435713	C	C	55435713	1	2	137	0	1	0	0	0	0	0	0	0	2204	1450	50	5		5	C2orf63	2	55435713	Intron	SNP	T	TCGA-49-4501-01A-01D-1265-08	234848	55435713	187763660	28	121163											
MXD1	4084	broad.mit.edu	37	chr2	70164438	70164438	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgagagcagcgacacctgaaGaggcagctggagaagctggg	17	9	0	4			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70164438	A	A	70164438	2	1	137	1	0	0	0	0	0	0	0	1	10093	933	33	4		4	MXD1	2	70164438	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	14728725	70164438	173034935	29	121164											
DCTN1	1639	broad.mit.edu	37	chr2	74594501	74594501	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgtggtcagccagctgcAtagtacagtcctcaggctgt	11	10	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74594501	G	G	74594501	3	3	137	1	0	0	0	0	1	0	0	0	4339	217	8	5	1661	5	DCTN1	2	74594501	Missense_Mutation	SNP	A	TCGA-49-4501-01A-01D-1265-08	4430063	74594501	168604872	30	121165											
MGAT5	4249	broad.mit.edu	37	chr2	135076374	135076374	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggactgttctgtagctgagtCtgaaatttgaaaagcttgaa	11	5	2	4			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135076374	T	T	135076374	1	4	137	0	1	0	0	0	0	0	0	0	9641	928	32	4		4	MGAT5	2	135076374	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	60481873	135076374	108122999	31	121166											
ZSWIM2	151112	broad.mit.edu	37	chr2	187702037	187702037	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacggataacacttacttatAacacttcccctcaattggaa	4	11	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187702037	G	G	187702037	3	3	137	1	0	0	0	0	1	0	0	0	18370	362	13	5	1182	5	ZSWIM2	2	187702037	Missense_Mutation	SNP	A	TCGA-49-4501-01A-01D-1265-08	52625663	187702037	55497336	32	121167											
TMEM169	92691	broad.mit.edu	37	chr2	216964796	216964796	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagagtcatcaagggaaaCgacgcctgaaggaagaatgg	13	6	2	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216964796	T	T	216964796	3	4	137	1	0	0	0	0	1	0	0	0	16207	536	19	4	431	4	TMEM169	2	216964796	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	29262759	216964796	26234577	33	121168											
VIL1	7429	broad.mit.edu	37	chr2	219301981	219301981	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtggtgaagcagggacaCgagccccccaccttcacagg	12	13	1	1	rs141506332	byFrequency	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219301981	T	T	219301981	2	4	137	1	0	0	0	0	0	0	0	1	17291	535	19	4		4	VIL1	2	219301981	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	2337185	219301981	23897392	34	121169											
AGAP1	116987	broad.mit.edu	37	chr2	236659077	236659077	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgacctgaaacggtgcacGtactacgagacgtgtgctac	11	11	0	2	rs139143512	byFrequency	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236659077	A	A	236659077	2	1	137	1	0	0	0	0	0	0	0	1	366	1132	40	4		4	AGAP1	2	236659077	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	17357096	236659077	6540296	35	121170											
LSM3	27258	broad.mit.edu	37	chr3	14222947	14222947	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atctccattttacagattagGagactgaggcagaaaaaggt	10	6	1	4			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14222947	C	C	14222947	1	2	137	0	1	0	0	0	0	0	0	0	9144	1189	41	4		4	LSM3	3	14222947	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08		14222947	183799483	36	121171											
SLC4A7	9497	broad.mit.edu	37	chr3	27472895	27472895	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtgggaatatcatcactGgcaggtgaaaccagtagttc	11	8	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27472895	A	A	27472895	2	1	137	1	0	0	0	0	0	0	0	1	14772	1335	47	4		4	SLC4A7	3	27472895	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	13249948	27472895	170549535	37	121172											
MON1A	84315	broad.mit.edu	37	chr3	49947622	49947622	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggatgcccacttgggcaaCgctgtagtagggtgtgcgca	16	9	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49947622	T	T	49947622	3	4	137	1	0	0	0	0	1	0	0	0	9792	536	19	4	370	4	MON1A	3	49947622	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	22474727	49947622	148074808	38	121173											
HYAL3	8372	broad.mit.edu	37	chr3	50331104	50331104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccccccagagcaccacgcCggctgcccctagtgctgcac	10	20	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50331104	A	A	50331104	3	1	137	1	0	0	0	0	1	0	0	0	7535	652	23	1	318	1	HYAL3	3	50331104	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	383482	50331104	147691326	39	121174											
DNAH1	25981	broad.mit.edu	37	chr3	52429597	52429597	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccatgatgcgcagctccaTagagaggggcaaatgggtct	14	9	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52429597	C	C	52429597	3	2	137	1	0	0	0	0	1	0	0	0	4637	1406	49	5	11436	5	DNAH1	3	52429597	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08	2098493	52429597	145592833	40	121175											
ADAMTS9	56999	broad.mit.edu	37	chr3	64582594	64582594	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattctctccacacagtcgTttgcggtgtatccattttca	6	11	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64582594	C	C	64582594	3	2	137	1	0	0	0	0	1	0	0	0	273	1725	60	5	1768	5	ADAMTS9	3	64582594	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08	12152997	64582594	133439836	41	121176											
FAM55C	91775	broad.mit.edu	37	chr3	101540334	101540334	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacatcctgctcaaatacCgctgccatggtccacccatc	5	17	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101540334	A	A	101540334	3	1	137	1	0	0	0	0	1	0	0	0	5637	652	23	1	1234	1	FAM55C	3	101540334	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	36957740	101540334	96482096	42	121177											
IGSF11	152404	broad.mit.edu	37	chr3	118649138	118649138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacctacagaagaaggaaCagggaggttatatgctcgcc	11	9	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118649138	A	A	118649138	1	1	137	0	1	0	0	0	0	0	0	0	7668	493	17	3		3	IGSF11	3	118649138	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	17108804	118649138	79373292	43	121178											
SEMA5B	54437	broad.mit.edu	37	chr3	122642572	122642572	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagcactgaggttgaaggcGcagacagcagaagccgcgat	14	9	0	4			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122642572	A	A	122642572	2	1	137	1	0	0	0	0	0	0	0	1	14151	1079	38	4		4	SEMA5B	3	122642572	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	3993434	122642572	75379858	44	121179											
COL6A6	131873	broad.mit.edu	37	chr3	130363892	130363892	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttaatcaagctctaaaatGtcatacatctggaaagatga	6	7	4	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130363892	C	C	130363892	1	2	137	0	1	0	0	0	0	0	0	0	3735	1392	48	4		4	COL6A6	3	130363892	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	7721320	130363892	67658538	45	121180											
NEK11	79858	broad.mit.edu	37	chr3	130884337	130884337	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattgagatctcggaactttCagcagctgagtgttgatgta	11	6	2	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130884337	T	T	130884337	4	4	137	1	0	0	0	0	0	1	0	0	10418	827	29	4	1188	4	NEK11	3	130884337	Nonsense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	520445	130884337	67138093	46	121181											
DHX36	170506	broad.mit.edu	37	chr3	154002557	154002557	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaaatatatctaagcaactCctgttcacatctaaaataac	2	9	3	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154002557	A	A	154002557	1	1	137	0	1	0	0	0	0	0	0	0	4549	870	30	3		3	DHX36	3	154002557	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	23118220	154002557	44019873	47	121182											
MUC4	4585	broad.mit.edu	37	chr3	195492323	195492323	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgcagcccttggaggcctGaggtcggggatgggggggaa	20	8	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195492323	A	A	195492323	1	1	137	0	1	0	0	0	0	0	0	0	10072	1305	45	4		4	MUC4	3	195492323	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	41489766	195492323	2530107	48	121183											
ZNF595	152687	broad.mit.edu	37	chr4	64890	64890	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtcacagggctgcttcaagGagcacagttgaggccaagat	13	9	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64890	A	A	64890	1	1	137	0	1	0	0	0	0	0	0	0	18152	1189	41	4		4	ZNF595	4	64890	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08		64890	191089386	49	121184											
ANAPC4	29945	broad.mit.edu	37	chr4	25390386	25390386	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagatacgccttttcttgTtttcaagtaagataatctgc	7	7	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25390386	C	C	25390386	1	2	137	0	1	0	0	0	0	0	0	0	604	1740	60	5		5	ANAPC4	4	25390386	Intron	SNP	T	TCGA-49-4501-01A-01D-1265-08	25325496	25390386	165763890	50	121185											
CENPE	1062	broad.mit.edu	37	chr4	104030306	104030306	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgattcttaagatgtattcAcatttatatttaaaaattaa	3	3	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104030306	T	T	104030306	1	4	137	0	1	0	0	0	0	0	0	0	3260	174	6	5		5	CENPE	4	104030306	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	78639920	104030306	87123970	51	121186											
CENPE	1062	broad.mit.edu	37	chr4	104041347	104041347	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttttcaaggcatttAtttgattcatgaactttggc	7	5	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104041347	T	T	104041347	3	4	137	1	0	0	0	0	1	0	0	0	3260	446	16	5	842	5	CENPE	4	104041347	Missense_Mutation	SNP	A	TCGA-49-4501-01A-01D-1265-08	11041	104041347	87112929	52	121187											
KIAA1109	84162	broad.mit.edu	37	chr4	123120414	123120414	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgactaccatttttcaagGattccttctttgagtggtgg	10	7	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123120414	T	T	123120414	1	4	137	0	1	0	0	0	0	0	0	0	8278	1189	41	3		3	KIAA1109	4	123120414	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	19079067	123120414	68033862	53	121188											
GALNTL6	442117	broad.mit.edu	37	chr4	173232912	173232912	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgtcatgctaagtgagtatCagcatatcagtgatcagggt	11	7	4	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173232912	A	A	173232912	1	1	137	0	1	0	0	0	0	0	0	0	6287	841	29	3		3	GALNTL6	4	173232912	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	50112498	173232912	17921364	54	121189											
SORBS2	8470	broad.mit.edu	37	chr4	186544955	186544955	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggacataggccattttgcGgtggttctagggttacggga	16	6	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186544955	A	A	186544955	3	1	137	1	0	0	0	0	1	0	0	0	15042	1116	39	4	1722	4	SORBS2	4	186544955	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	13312043	186544955	4609321	55	121190											
CYP4V2	285440	broad.mit.edu	37	chr4	187131662	187131662	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaagaaaagaccattctttCgtgcatcctgaggcactttt	9	9	1	3	rs146494374		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187131662	T	T	187131662	3	4	137	1	0	0	0	0	1	0	0	0	4225	893	31	4	1487	4	CYP4V2	4	187131662	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	586707	187131662	4022614	56	121191											
SEMA5A	9037	broad.mit.edu	37	chr5	9044393	9044393	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaaaattcagtttcaaagGaaaccaccacagcagagaaa	8	8	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9044393	C	C	9044393	1	2	137	0	1	0	0	0	0	0	0	0	14150	1189	41	4		4	SEMA5A	5	9044393	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08		9044393	171870867	57	121192											
ANKH	56172	broad.mit.edu	37	chr5	14871414	14871414	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccgtgtccgggcgtgtaAggccaaggcagggcgagcgg	18	13	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14871414	G	G	14871414	1	3	137	0	1	0	0	0	0	0	0	0	627	87	3	5		5	ANKH	5	14871414	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	5827021	14871414	166043846	58	121193											
SPEF2	79925	broad.mit.edu	37	chr5	35753664	35753664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggattttagttttattGcacctaggtgatttgagcag	10	5	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35753664	T	T	35753664	1	4	137	0	1	0	0	0	0	0	0	0	15153	1334	46	3		3	SPEF2	5	35753664	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	20882250	35753664	145161596	59	121194											
UGT3A1	133688	broad.mit.edu	37	chr5	35954373	35954373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcagcttcccacaaagCcacatagtgcccagagtgag	9	15	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35954373	A	A	35954373	3	1	137	1	0	0	0	0	1	0	0	0	17089	740	26	3	72	3	UGT3A1	5	35954373	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	200709	35954373	144960887	60	121195											
SLC38A9	153129	broad.mit.edu	37	chr5	54929503	54929503	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catttttatagcaaaaggatCagtcacactttaaactgacc	5	9	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54929503	T	T	54929503	1	4	137	0	1	0	0	0	0	0	0	0	14725	841	29	4		4	SLC38A9	5	54929503	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	18975130	54929503	125985757	61	121196											
MRPS27	23107	broad.mit.edu	37	chr5	71516986	71516986	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgtaaggcctgttggaaaCaaatgggaaaaatgagaaga	12	3	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71516986	G	G	71516986	1	3	137	0	1	0	0	0	0	0	0	0	9932	493	17	4		4	MRPS27	5	71516986	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	16587483	71516986	109398274	62	121197											
PCSK1	5122	broad.mit.edu	37	chr5	95751907	95751907	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgaattaatggggcataGgtatattaactttttgtcgg	11	3	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95751907	T	T	95751907	1	4	137	0	1	0	0	0	0	0	0	0	11694	1015	35	2		2	PCSK1	5	95751907	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	24234921	95751907	85163353	63	121198											
PCDHA1	56147	broad.mit.edu	37	chr5	140167367	140167367	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctattcgctggtggaacggCgggtgggcgagcgcgcgctg	19	11	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140167367	T	T	140167367	3	4	137	1	0	0	0	0	1	0	0	0	11613	759	27	4	1494	4	PCDHA1	5	140167367	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	44415460	140167367	40747893	64	121199											
PCDHA10	56139	broad.mit.edu	37	chr5	140236799	140236799	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggtcacctgctctctgaCgcctcacgttccgttcaagc	8	16	4	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140236799	T	T	140236799	3	4	137	1	0	0	0	0	1	0	0	0	11614	536	19	4	1168	4	PCDHA10	5	140236799	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	69432	140236799	40678461	65	121200											
JAKMIP2	9832	broad.mit.edu	37	chr5	146991890	146991890	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttctaagtcttttatTtgtcttttctggatgtctgt	6	6	6	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146991890	C	C	146991890	2	2	137	1	0	0	0	0	0	0	0	1	8011	1838	64	5		5	JAKMIP2	5	146991890	Silent	SNP	T	TCGA-49-4501-01A-01D-1265-08	6755091	146991890	33923370	66	121201											
FAM71B	153745	broad.mit.edu	37	chr5	156592963	156592963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctggtgcagacgatgcCcactgtcaccattcggacac	13	13	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156592963	A	A	156592963	3	1	137	1	0	0	0	0	1	0	0	0	5659	623	22	2	1608	2	FAM71B	5	156592963	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	9601073	156592963	24322297	67	121202											
CDHR2	54825	broad.mit.edu	37	chr5	176017071	176017071	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctctgtgacatctgccttCtttgcagggctcttacccag	9	14	4	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176017071	T	T	176017071	1	4	137	0	1	0	0	0	0	0	0	0	3149	928	32	4		4	CDHR2	5	176017071	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	19424108	176017071	4898189	68	121203											
PBX2	5089	broad.mit.edu	37	chr6	32157563	32157563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccctcggcctcccgggaCccccccgctacccccaccgg	8	25	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32157563	A	A	32157563	3	1	137	1	0	0	0	0	1	0	0	0	11587	507	18	3	1198	3	PBX2	6	32157563	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08		32157563	138957504	69	121204											
SRPK1	6732	broad.mit.edu	37	chr6	35806411	35806411	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttttgtggattcagtgAtaactaaaaacaatcttggt	7	4	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35806411	C	C	35806411	1	2	137	0	1	0	0	0	0	0	0	0	15277	348	12	5		5	SRPK1	6	35806411	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	3648848	35806411	135308656	70	121205											
CAPN11	11131	broad.mit.edu	37	chr6	44144683	44144683	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactggcacaccaccttctaCgagggcagctggcgcagagg	13	13	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44144683	T	T	44144683	2	4	137	1	0	0	0	0	0	0	0	1	2650	547	19	4		4	CAPN11	6	44144683	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	8338272	44144683	126970384	71	121206											
THEMIS	387357	broad.mit.edu	37	chr6	128134845	128134845	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctaagattcttgatgccTggtactttttgtggatcaca	9	7	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128134845	C	C	128134845	3	2	137	1	0	0	0	0	1	0	0	0	15983	1580	55	5	1117	5	THEMIS	6	128134845	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08	83990162	128134845	42980222	72	121207											
ENPP1	5167	broad.mit.edu	37	chr6	132203597	132203597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacaccaaagtgagttacgGgttcctctccccaccacgta	7	14	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132203597	A	A	132203597	3	1	137	1	0	0	0	0	1	0	0	0	5171	1232	43	4	2295	4	ENPP1	6	132203597	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	4068752	132203597	38911470	73	121208											
AKAP12	9590	broad.mit.edu	37	chr6	151672021	151672021	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcccctgttgaagacgcagGgccaacaggggccaacgaag	14	12	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151672021	C	C	151672021	3	2	137	1	0	0	0	0	1	0	0	0	448	1232	43	4	2534	4	AKAP12	6	151672021	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	19468424	151672021	19443046	74	121209											
PARK2	5071	broad.mit.edu	37	chr6	161781119	161781119	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgctcagcacagactcaCcatttttttccactggtaca	5	14	3	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161781119	A	A	161781119	5	1	137	1	0	0	0	0	0	0	1	0	11543	521	18	3	119	3	PARK2	6	161781119	Splice_Site	SNP	C	TCGA-49-4501-01A-01D-1265-08	10109098	161781119	9333948	75	121210											
CARD11	84433	broad.mit.edu	37	chr7	2983995	2983995	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccttcatcttgtagtaccGctcctggaaggttagcagct	9	11	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2983995	A	A	2983995	3	1	137	1	0	0	0	0	1	0	0	0	2671	1086	38	4	3013	4	CARD11	7	2983995	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08		2983995	156154668	76	121211											
COL28A1	340267	broad.mit.edu	37	chr7	7546881	7546881	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaaggaaatgtgttctcGgtaattgccatcttccctgg	12	8	2	0	rs146297757	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7546881	A	A	7546881	1	1	137	0	1	0	0	0	0	0	0	0	3718	1131	39	4		4	COL28A1	7	7546881	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	4562886	7546881	151591782	77	121212											
HOXA9	3205	broad.mit.edu	37	chr7	27203329	27203329	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgagcagtcgagccacctCgtacctgcggtccctggtga	13	13	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27203329	T	T	27203329	3	4	137	1	0	0	0	0	1	0	0	0	7365	893	31	4	110	4	HOXA9	7	27203329	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	19656448	27203329	131935334	78	121213											
CPVL	54504	broad.mit.edu	37	chr7	29132221	29132221	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttaggaaagccaagagAaagcaggagcattttacctg	12	7	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29132221	G	G	29132221	1	3	137	0	1	0	0	0	0	0	0	0	3867	261	9	5		5	CPVL	7	29132221	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	1928892	29132221	130006442	79	121214											
POM121L12	285877	broad.mit.edu	37	chr7	53104271	53104271	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaagaatctgggctctgcTacccacctccggagacacaa	8	15	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104271	A	A	53104271	1	1	137	0	1	0	0	0	0	0	0	0	12336	1537	53	5		5	POM121L12	7	53104271	3'UTR	SNP	T	TCGA-49-4501-01A-01D-1265-08	23972050	53104271	106034392	80	121215											
EGFR	1956	broad.mit.edu	37	chr7	55242466	55242480	+	In_Frame_Del	DEL	GAATTAAGAGAAGCA	-	-													aaattcccgtcgctatcaagGaattaagagaagcaacatct					rs121913426		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242480	-	-	55242466	7	5	137	1	0	1	0	1	0	0	0	0	5007	1175	41	0	2574	0	EGFR	7	55242466	In_Frame_Del	DEL	GAATTAAGAGAAGCA	TCGA-49-4501-01A-01D-1265-08	2138195	55242466	103896197	81	121216											
PTPN12	5782	broad.mit.edu	37	chr7	77256457	77256457	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaagttcagatctaaatgtCggtgatacttcccagaattc	7	8	2	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77256457	G	G	77256457	2	3	137	1	0	0	0	0	0	0	0	1	12887	871	31	4		4	PTPN12	7	77256457	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	22013991	77256457	81882206	82	121217											
ZCWPW1	55063	broad.mit.edu	37	chr7	100014548	100014548	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactgtactccagcctgggcGacagagcgagactccgtctc	11	15	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100014548	A	A	100014548	1	1	137	0	1	0	0	0	0	0	0	0	17723	1073	37	4		4	ZCWPW1	7	100014548	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	22758091	100014548	59124115	83	121218											
AP1S1	1174	broad.mit.edu	37	chr7	100803874	100803874	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccggggtgtggcgatGgggtcctggcagcgtggcgg	23	9	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100803874	T	T	100803874	1	4	137	0	1	0	0	0	0	0	0	0	738	1363	47	2		2	AP1S1	7	100803874	3'UTR	SNP	G	TCGA-49-4501-01A-01D-1265-08	789326	100803874	58334789	84	121219											
PLOD3	8985	broad.mit.edu	37	chr7	100859165	100859165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacagagctgcgggatgCgcccactcctctgccttccc	9	19	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100859165	A	A	100859165	1	1	137	0	1	0	0	0	0	0	0	0	12198	783	27	3		3	PLOD3	7	100859165	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	55291	100859165	58279498	85	121220											
CALD1	800	broad.mit.edu	37	chr7	134635162	134635162	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaggaagagattgaaaggcGaagagcagaagctgctgaga	15	4	0	5			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134635162	A	A	134635162	3	1	137	1	0	0	0	0	1	0	0	0	2607	1058	37	4	1915	4	CALD1	7	134635162	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	33775997	134635162	24503501	86	121221											
GIMAP4	55303	broad.mit.edu	37	chr7	150267105	150267105	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaggttagcaggtgggggTgggggatttgggggggaata	25	1	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150267105	C	C	150267105	1	2	137	0	1	0	0	0	0	0	0	0	6445	1711	59	5		5	GIMAP4	7	150267105	Intron	SNP	T	TCGA-49-4501-01A-01D-1265-08	15631943	150267105	8871558	87	121222											
EGR3	1960	broad.mit.edu	37	chr8	22548529	22548529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggaagggcttgtgctcCggaatggagcccatgtcgtt	14	11	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22548529	A	A	22548529	2	1	137	1	0	0	0	0	0	0	0	1	5013	639	23	1		1	EGR3	8	22548529	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08		22548529	123815493	88	121223											
ZFAND1	79752	broad.mit.edu	37	chr8	82626245	82626245	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttttggcacctttccatcGtttacttgctgtttctcctg	6	11	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82626245	A	A	82626245	4	1	137	1	0	0	0	0	0	1	0	0	17752	1153	40	4	478	4	ZFAND1	8	82626245	Nonsense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	60077716	82626245	63737777	89	121224											
TRPS1	7227	broad.mit.edu	37	chr8	116430700	116430700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaaacaggggaaaaaaaCcaaggtcagaggtgagtcac	12	7	3	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116430700	A	A	116430700	1	1	137	0	1	0	0	0	0	0	0	0	16718	522	18	3		3	TRPS1	8	116430700	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	33804455	116430700	29933322	90	121225											
LY6D	8581	broad.mit.edu	37	chr8	143866989	143866989	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccagccccagggacacctgGacagatgctacccacctgtg	10	17	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143866989	A	A	143866989	1	1	137	0	1	0	0	0	0	0	0	0	9178	1189	41	4		4	LY6D	8	143866989	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	27436289	143866989	2497033	91	121226											
VLDLR	7436	broad.mit.edu	37	chr9	2635511	2635511	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaatggtcgctgtattacGctgttgtggaaatgtgatgg	13	5	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2635511	A	A	2635511	2	1	137	1	0	0	0	0	0	0	0	1	17301	1074	38	4		4	VLDLR	9	2635511	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08		2635511	138577920	92	121227											
NUDT2	318	broad.mit.edu	37	chr9	34343338	34343338	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgagcaccaagcctaccGctggctggggctggaggagg	16	12	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34343338	A	A	34343338	3	1	137	1	0	0	0	0	1	0	0	0	10832	1087	38	4	350	4	NUDT2	9	34343338	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	31707827	34343338	106870093	93	121228											
ALDH1A1	216	broad.mit.edu	37	chr9	75555020	75555020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcagaatggcaaaaaaCcaagaaacctggcataaaat	8	8	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75555020	A	A	75555020	1	1	137	0	1	0	0	0	0	0	0	0	490	522	18	3		3	ALDH1A1	9	75555020	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	41211682	75555020	65658411	94	121229											
IKBKAP	8518	broad.mit.edu	37	chr9	111668633	111668633	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctcagaagaagctgcagtCaaatggtgaatgacagaccg	11	8	2	5			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111668633	T	T	111668633	2	4	137	1	0	0	0	0	0	0	0	1	7680	825	29	4		4	IKBKAP	9	111668633	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	36113613	111668633	29544798	95	121230											
OR1J2	26740	broad.mit.edu	37	chr9	125273234	125273234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatgctgctcatccagctgGactctcaccttcacaccccc	5	19	4	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125273234	A	A	125273234	3	1	137	1	0	0	0	0	1	0	0	0	11054	1174	41	4	156	4	OR1J2	9	125273234	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	13604601	125273234	15940197	96	121231											
SCAI	286205	broad.mit.edu	37	chr9	127765392	127765392	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtactggatcacacataCcttaaaagacgctgctaaga	7	9	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127765392	A	A	127765392	5	1	137	1	0	0	0	0	0	0	1	0	13981	521	18	3	786	3	SCAI	9	127765392	Splice_Site	SNP	C	TCGA-49-4501-01A-01D-1265-08	2492158	127765392	13448039	97	121232											
PPP2R4	5524	broad.mit.edu	37	chr9	131894081	131894081	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagggtggcttcaccggcaGggagggcgtaggcatgcagg	19	8	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131894081	A	A	131894081	1	1	137	0	1	0	0	0	0	0	0	0	12492	1015	35	4		4	PPP2R4	9	131894081	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	4128689	131894081	9319350	98	121233											
GRIN1	2902	broad.mit.edu	37	chr9	140055781	140055781	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgttgctacggcttttgcatCgacctgctcatcaagctggc	10	12	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140055781	A	A	140055781	2	1	137	1	0	0	0	0	0	0	0	1	6844	874	31	3		3	GRIN1	9	140055781	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	8161700	140055781	1157650	99	121234											
CCDC3	83643	broad.mit.edu	37	chr10	12940429	12940429	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcccgttacccccgcaggTagggggggcgcacgggcccc	17	16	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12940429	C	C	12940429	3	2	137	1	0	0	0	0	1	0	0	0	2831	1638	57	5	16	5	CCDC3	10	12940429	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08		12940429	122594318	100	121235											
PDSS1	23590	broad.mit.edu	37	chr10	27024316	27024317	+	Intron	INS	-	A	A													agcattctcccctagtgtgtINSaatcgtcaaaatagtaagaa							TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27024317	A	A	27024316	6	5	137	0	1	1	1	0	0	0	0	0	11787	1653	57	0		0	PDSS1	10	27024316	Intron	INS	-	TCGA-49-4501-01A-01D-1265-08	14083887	27024316	108510431	101	121236											
MYPN	84665	broad.mit.edu	37	chr10	69959230	69959230	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagaccggagtccactctCtgctcattgacccactcact	9	15	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69959230	T	T	69959230	2	4	137	1	0	0	0	0	0	0	0	1	10192	912	32	4		4	MYPN	10	69959230	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	42934914	69959230	65575517	102	121237											
ZDHHC16	84287	broad.mit.edu	37	chr10	99211511	99211511	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgggttacaggcgcCgctgtccacctctactccgg	12	15	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99211511	T	T	99211511	3	4	137	1	0	0	0	0	1	0	0	0	17732	652	23	4	81	4	ZDHHC16	10	99211511	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	29252281	99211511	36323236	103	121238											
FAM178A	55719	broad.mit.edu	37	chr10	102677018	102677018	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcaggaacaaaggaaacaGaatgacatcatacctggaaa	10	7	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102677018	A	A	102677018	2	1	137	1	0	0	0	0	0	0	0	1	5548	933	33	4		4	FAM178A	10	102677018	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	3465507	102677018	32857729	104	121239											
SIRT3	23410	broad.mit.edu	37	chr11	224185	224185	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaacacaatgtcgggctTcacaacgccggtgcagaccg	11	12	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224185	C	C	224185	3	2	137	1	0	0	0	0	1	0	0	0	14452	1792	62	5	349	5	SIRT3	11	224185	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08		224185	134782331	105	121240											
FAM160A2	84067	broad.mit.edu	37	chr11	6244204	6244204	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtagaatagtacactacaGagaggcatcctacttccaag	9	9	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6244204	A	A	6244204	1	1	137	0	1	0	0	0	0	0	0	0	5515	957	33	4		4	FAM160A2	11	6244204	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	6020019	6244204	128762312	106	121241											
RCN1	5954	broad.mit.edu	37	chr11	32122293	32122293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgggagcttccagcctGcttgtcccatcagccctagt	9	16	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32122293	T	T	32122293	1	4	137	0	1	0	0	0	0	0	0	0	13287	1334	46	3		3	RCN1	11	32122293	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	25878089	32122293	102884223	107	121242											
PTPRJ	5795	broad.mit.edu	37	chr11	48181542	48181542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatggagacataactgtgGcaatgacatcagaaattgtt	9	6	1	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48181542	T	T	48181542	3	4	137	1	0	0	0	0	1	0	0	0	12912	1203	42	3	3594	3	PTPRJ	11	48181542	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	16059249	48181542	86824974	108	121243											
ZDHHC5	25921	broad.mit.edu	37	chr11	57449913	57449913	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtccaggactaagcctgTatgtgtcacctgcagtgccc	12	12	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57449913	A	A	57449913	3	1	137	1	0	0	0	0	1	0	0	0	17744	1638	57	5	130	5	ZDHHC5	11	57449913	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08	9268371	57449913	77556603	109	121244											
PLAC1L	219990	broad.mit.edu	37	chr11	59811223	59811223	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatgtttgcttctcattgTagtaatttatgggcagggga	11	4	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59811223	A	A	59811223	1	1	137	0	1	0	0	0	0	0	0	0	12108	1653	57	5		5	PLAC1L	11	59811223	Intron	SNP	T	TCGA-49-4501-01A-01D-1265-08	2361310	59811223	75195293	110	121245											
MS4A4A	51338	broad.mit.edu	37	chr11	60070165	60070165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggcaactcaaataattGtcatgggactatgtccatct	7	9	3	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60070165	T	T	60070165	3	4	137	1	0	0	0	0	1	0	0	0	9956	1377	48	3	539	3	MS4A4A	11	60070165	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	258942	60070165	74936351	111	121246											
CD5	921	broad.mit.edu	37	chr11	60890291	60890291	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcagatgagcaaggatgaCggcggaagccaggcagccag	15	10	1	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60890291	T	T	60890291	1	4	137	0	1	0	0	0	0	0	0	0	3051	551	19	4		4	CD5	11	60890291	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	820126	60890291	74116225	112	121247											
SHANK2	22941	broad.mit.edu	37	chr11	70318954	70318954	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttataacaagagcagtctgcGaggtggagagcagccgtcct	13	9	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70318954	A	A	70318954	1	1	137	0	1	0	0	0	0	0	0	0	14378	1073	37	4		4	SHANK2	11	70318954	3'UTR	SNP	G	TCGA-49-4501-01A-01D-1265-08	9428663	70318954	64687562	113	121248											
ANKRD49	54851	broad.mit.edu	37	chr11	94230270	94230270	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcacatattaagctgcAaagtgtcatgctaggtatta	9	6	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94230270	G	G	94230270	1	3	137	0	1	0	0	0	0	0	0	0	675	145	5	5		5	ANKRD49	11	94230270	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	23911316	94230270	40776246	114	121249											
SLC35F2	54733	broad.mit.edu	37	chr11	107677363	107677363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaatactccagtaaaCaagtttctttgttgatataa	5	5	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107677363	A	A	107677363	1	1	137	0	1	0	0	0	0	0	0	0	14703	493	17	3		3	SLC35F2	11	107677363	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	13447093	107677363	27329153	115	121250											
PIH1D2	120379	broad.mit.edu	37	chr11	111941473	111941473	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaaataaatctacaacAtaaaatactatgagctataa	2	5	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111941473	G	G	111941473	1	3	137	0	1	0	0	0	0	0	0	0	12002	232	8	5		5	PIH1D2	11	111941473	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	4264110	111941473	23065043	116	121251											
OR10G7	390265	broad.mit.edu	37	chr11	123909325	123909325	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatgttggtgtacctgagCgggtaactgatggccaggta	14	7	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123909325	T	T	123909325	2	4	137	1	0	0	0	0	0	0	0	1	10996	755	27	4		4	OR10G7	11	123909325	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	11967852	123909325	11097191	117	121252											
PRDM10	56980	broad.mit.edu	37	chr11	129812531	129812531	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttatcaagagaaacctgcacGaaaaaaaagccacaccaaaa	5	10	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129812531	A	A	129812531	1	1	137	0	1	0	0	0	0	0	0	0	12557	1073	37	4		4	PRDM10	11	129812531	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	5903206	129812531	5193985	118	121253											
B4GALNT3	283358	broad.mit.edu	37	chr12	654047	654047	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttcccctttcttggcataGattcgcacaaccctgaggaa	7	14	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	654047	C	C	654047	5	2	137	1	0	0	0	0	0	0	1	0	1273	956	33	4	465	4	B4GALNT3	12	654047	Splice_Site	SNP	G	TCGA-49-4501-01A-01D-1265-08		654047	133197848	119	121254											
ZNF384	171017	broad.mit.edu	37	chr12	6788136	6788136	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcatcagtcctgtagacgGcacagggaccaccgtgatat	11	11	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6788136	A	A	6788136	3	1	137	1	0	0	0	0	1	0	0	0	18001	1203	42	4	1485	4	ZNF384	12	6788136	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	6134089	6788136	127063759	120	121255											
LRRK2	120892	broad.mit.edu	37	chr12	40709014	40709014	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgatgactttttactacagGagtccttcttcattttcaag	6	8	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40709014	A	A	40709014	3	1	137	1	0	0	0	0	1	0	0	0	9120	1188	41	4	4869	4	LRRK2	12	40709014	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	33920878	40709014	93142881	121	121256											
FAM19A2	338811	broad.mit.edu	37	chr12	62273639	62273639	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggacttcaagaagaagtAccatgatgagatcaataagc	11	6	2	4			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62273639	G	G	62273639	1	3	137	0	1	0	0	0	0	0	0	0	5579	406	14	5		5	FAM19A2	12	62273639	Intron	SNP	A	TCGA-49-4501-01A-01D-1265-08	21564625	62273639	71578256	122	121257											
USP15	9958	broad.mit.edu	37	chr12	62783684	62783684	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacccaccatactggttcttCactttttggtcagccctttc	5	14	3	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62783684	A	A	62783684	4	1	137	1	0	0	0	0	0	1	0	0	17172	838	29	3	1723	3	USP15	12	62783684	Nonsense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	510045	62783684	71068211	123	121258											
CPM	1368	broad.mit.edu	37	chr12	69326415	69326415	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttaatgaatactgaaaggGaggactgagggtttggcaaa	13	3	0	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69326415	A	A	69326415	1	1	137	0	1	0	0	0	0	0	0	0	3840	1189	41	4		4	CPM	12	69326415	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	6542731	69326415	64525480	124	121259											
TPCN1	53373	broad.mit.edu	37	chr12	113729448	113729448	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagacctcccactggagccGcctctacttcatgacctttt	6	16	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113729448	A	A	113729448	3	1	137	1	0	0	0	0	1	0	0	0	16519	1087	38	4	2304	4	TPCN1	12	113729448	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	44403033	113729448	20122447	125	121260											
CIT	11113	broad.mit.edu	37	chr12	120128147	120128147	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcccctcgcggtagcggtGgggtgtgcttggctctcgcg	17	14	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120128147	A	A	120128147	3	1	137	1	0	0	0	0	1	0	0	0	3469	1348	47	4	222	4	CIT	12	120128147	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	6398699	120128147	13723748	126	121261											
GOLGA3	2802	broad.mit.edu	37	chr12	133365528	133365528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgccccagacacaggccCcgccccagacacaggcccca	8	24	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133365528	A	A	133365528	1	1	137	0	1	0	0	0	0	0	0	0	6618	638	22	2		2	GOLGA3	12	133365528	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	13237381	133365528	486367	127	121262											
NUPL1	9818	broad.mit.edu	37	chr13	25905666	25905666	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccgttgccatggctgcaAcacttacacagcagcaacag	9	14	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25905666	G	G	25905666	3	3	137	1	0	0	0	0	1	0	0	0	10869	43	2	5	1455	5	NUPL1	13	25905666	Missense_Mutation	SNP	A	TCGA-49-4501-01A-01D-1265-08		25905666	89264212	128	121263											
KL	9365	broad.mit.edu	37	chr13	33629297	33629297	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gactcttctatgttgactttCtaagccaggacaagatgttg	9	8	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33629297	T	T	33629297	2	4	137	1	0	0	0	0	0	0	0	1	8402	912	32	4		4	KL	13	33629297	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	7723631	33629297	81540581	129	121264											
SCEL	8796	broad.mit.edu	37	chr13	78176221	78176221	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atccaaagccttggaagtccGattaaagttaatcaaaggac	8	8	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78176221	A	A	78176221	2	1	137	1	0	0	0	0	0	0	0	1	14000	1045	37	4		4	SCEL	13	78176221	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	44546924	78176221	36993657	130	121265											
TMCO3	55002	broad.mit.edu	37	chr13	114201655	114201655	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggcgtacgagctcacGgtgctggtgttcctcacctt	12	11	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114201655	T	T	114201655	2	4	137	1	0	0	0	0	0	0	0	1	16120	1103	39	1		1	TMCO3	13	114201655	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	36025434	114201655	968223	131	121266											
ABHD12B	145447	broad.mit.edu	37	chr14	51352529	51352529	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagaggagggactgactaCggatgccatttgtgtctatg	13	8	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51352529	T	T	51352529	3	4	137	1	0	0	0	0	1	0	0	0	77	536	19	4	383	4	ABHD12B	14	51352529	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08		51352529	55997011	132	121267											
SPTB	6710	broad.mit.edu	37	chr14	65239968	65239968	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagtcttgccccatttcCggggaagaggccactagctc	10	13	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65239968	A	A	65239968	2	1	137	1	0	0	0	0	0	0	0	1	15236	639	23	1		1	SPTB	14	65239968	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	13887439	65239968	42109572	133	121268											
EXD2	55218	broad.mit.edu	37	chr14	69704265	69704265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcatacacttatgagcGctgctttccggctgggcttg	11	11	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69704265	T	T	69704265	1	4	137	0	1	0	0	0	0	0	0	0	5340	1102	38	3		3	EXD2	14	69704265	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	4464297	69704265	37645275	134	121269											
ANGEL1	23357	broad.mit.edu	37	chr14	77275637	77275637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccctccaccccctccacCtccagcagtggctcctctcc	6	23	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77275637	A	A	77275637	3	1	137	1	0	0	0	0	1	0	0	0	608	680	24	2	1634	2	ANGEL1	14	77275637	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	7571372	77275637	30073903	135	121270											
KIAA1409	57578	broad.mit.edu	37	chr14	94173127	94173127	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcctaaggacgctgccGggctcgggccagagcagtgc	15	14	0	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94173127	A	A	94173127	2	1	137	1	0	0	0	0	0	0	0	1	8300	1103	39	4		4	KIAA1409	14	94173127	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	16897490	94173127	13176413	136	121271											
HHIPL1	84439	broad.mit.edu	37	chr14	100123148	100123149	+	Intron	INS	-	A	A													aaagaaagaaagaaagaaagINSaaagaaagaaagaaagaaag							TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100123149	A	A	100123148	6	5	137	0	1	1	1	0	0	0	0	0	7160	957	33	0		0	HHIPL1	14	100123148	Intron	INS	-	TCGA-49-4501-01A-01D-1265-08	5950021	100123148	7226392	137	121272											
DYNC1H1	1778	broad.mit.edu	37	chr14	102493718	102493718	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacttgcctctgcttctgtAggtccataggaagtacacag	9	10	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102493718	G	G	102493718	5	3	137	1	0	0	0	0	0	0	1	0	4881	434	15	5	9067	5	DYNC1H1	14	102493718	Splice_Site	SNP	A	TCGA-49-4501-01A-01D-1265-08	2370570	102493718	4855822	138	121273											
CYFIP1	23191	broad.mit.edu	37	chr15	23002904	23002904	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatggtggagagaattcGcaagttccagattctcaatg	12	6	1	3	rs140750865		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23002904	A	A	23002904	3	1	137	1	0	0	0	0	1	0	0	0	4170	1087	38	4	4125	4	CYFIP1	15	23002904	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08		23002904	79528488	139	121274											
FBN1	2200	broad.mit.edu	37	chr15	48818423	48818423	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattcacccccttcacagaTtccaggaatggtgctgcatt	7	13	2	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48818423	C	C	48818423	3	2	137	1	0	0	0	0	1	0	0	0	5759	1493	52	5	7955	5	FBN1	15	48818423	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08	25815519	48818423	53712969	140	121275											
DAPK2	23604	broad.mit.edu	37	chr15	64263636	64263636	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgaccttgagatcaaagtGagcaattttctttgtgtgaa	9	6	2	4			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64263636	A	A	64263636	3	1	137	1	0	0	0	0	1	0	0	0	4269	1290	45	4	709	4	DAPK2	15	64263636	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	15445213	64263636	38267756	141	121276											
KREMEN2	79412	broad.mit.edu	37	chr16	3016123	3016123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggtgggagccccaccaCctccctcccacccgcagtaa	11	18	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3016123	A	A	3016123	1	1	137	0	1	0	0	0	0	0	0	0	8514	522	18	3		3	KREMEN2	16	3016123	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08		3016123	87338630	142	121277											
APOB48R	55911	broad.mit.edu	37	chr16	28509145	28509145	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcatggtgaccgggggccGgagggcagaggccaaggaga	19	9	1	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28509145	A	A	28509145	3	1	137	1	0	0	0	0	1	0	0	0	788	1116	39	4	2766	4	APOB48R	16	28509145	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	25493022	28509145	61845608	143	121278											
CNOT1	23019	broad.mit.edu	37	chr16	58608503	58608503	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtcatattcatgtatgTacttcttaccctgcacaagc	5	10	3	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58608503	C	C	58608503	1	2	137	0	1	0	0	0	0	0	0	0	3649	1653	57	5		5	CNOT1	16	58608503	Intron	SNP	T	TCGA-49-4501-01A-01D-1265-08	30099358	58608503	31746250	144	121279											
NOL3	8996	broad.mit.edu	37	chr16	67208858	67208858	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtccgaaggtgtgagtccGcccaaaccctgagccggctt	13	13	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67208858	A	A	67208858	1	1	137	0	1	0	0	0	0	0	0	0	10618	1102	38	4		4	NOL3	16	67208858	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	8600355	67208858	23145895	145	121280											
MYH3	4621	broad.mit.edu	37	chr17	10538773	10538773	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactattggccttggacagCgccctctgcagctcagcttt	9	14	3	0	rs151186379		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10538773	T	T	10538773	2	4	137	1	0	0	0	0	0	0	0	1	10130	755	27	4		4	MYH3	17	10538773	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08		10538773	70656437	146	121281											
TOP3A	7156	broad.mit.edu	37	chr17	18194306	18194307	+	In_Frame_Ins	INS	-	CGA	CGA													agcagcaagccaggaaatggINScgaacaataaactcgtacag							TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CGA	18194307	CGA	CGA	18194306	7	5	137	1	0	1	1	0	0	0	0	0	16491	1190	42	0	1720	0	TOP3A	17	18194306	In_Frame_Ins	INS	-	TCGA-49-4501-01A-01D-1265-08	7655533	18194306	63000904	147	121282											
TNS4	84951	broad.mit.edu	37	chr17	38652176	38652176	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctctgtacataggaaaaTccttcttcctcatgaggtct	6	11	4	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38652176	C	C	38652176	1	2	137	0	1	0	0	0	0	0	0	0	16468	1450	50	5		5	TNS4	17	38652176	Intron	SNP	T	TCGA-49-4501-01A-01D-1265-08	20457870	38652176	42543034	148	121283											
C17orf53	78995	broad.mit.edu	37	chr17	42229868	42229868	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttggagataaatgagaggaGagactgtggccattgtacta	13	5	0	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42229868	A	A	42229868	1	1	137	0	1	0	0	0	0	0	0	0	1878	957	33	4		4	C17orf53	17	42229868	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	3577692	42229868	38965342	149	121284											
GH2	2689	broad.mit.edu	37	chr17	61957888	61957888	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttccagcctctgcaaagtGaaggaagagaaggagaggcc	13	9	2	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61957888	A	A	61957888	1	1	137	0	1	0	0	0	0	0	0	0	6432	1290	45	4		4	GH2	17	61957888	Intron	SNP	G	TCGA-49-4501-01A-01D-1265-08	19728020	61957888	19237322	150	121285											
HELZ	9931	broad.mit.edu	37	chr17	65146228	65146228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaagagtattgagtactttTatttatttattttctttctt	4	4	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65146228	C	C	65146228	1	2	137	0	1	0	0	0	0	0	0	0	7116	1769	61	5		5	HELZ	17	65146228	Intron	SNP	T	TCGA-49-4501-01A-01D-1265-08	3188340	65146228	16048982	151	121286											
UNC13D	201294	broad.mit.edu	37	chr17	73824137	73824137	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcttctcggtcacccttcCggccctccagcagctgcagg	12	17	2	0	rs79891552		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73824137	G	G	73824137	3	3	137	1	0	0	0	0	1	0	0	0	17113	652	23	4	94	4	UNC13D	17	73824137	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	8677909	73824137	7371073	152	121287											
NPLOC4	55666	broad.mit.edu	37	chr17	79573860	79573861	+	Intron	INS	-	TTAA	TTAA													ctacatagaagagaagcaacINSttaaacatcacattggtgaa					rs144978834	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTAA	79573861	TTAA	TTAA	79573860	6	5	137	0	1	1	1	0	0	0	0	0	10681	580	20	0		0	NPLOC4	17	79573860	Intron	INS	-	TCGA-49-4501-01A-01D-1265-08	5749723	79573860	1621350	153	121288											
ZNF521	25925	broad.mit.edu	37	chr18	22806286	22806286	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcacaatgaacctgtctAatatgctcttccagggaaga	9	9	3	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22806286	G	G	22806286	2	3	137	1	0	0	0	0	0	0	0	1	18092	358	13	5		5	ZNF521	18	22806286	Silent	SNP	A	TCGA-49-4501-01A-01D-1265-08		22806286	55270962	154	121289											
RIT2	6014	broad.mit.edu	37	chr18	40695522	40695522	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaaaaagaaggagaaaGtcacccgtgtcaggtgcttg	13	6	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40695522	T	T	40695522	1	4	137	0	1	0	0	0	0	0	0	0	13498	1044	36	3		3	RIT2	18	40695522	5'UTR	SNP	G	TCGA-49-4501-01A-01D-1265-08	17889236	40695522	37381726	155	121290											
ALPK2	115701	broad.mit.edu	37	chr18	56205126	56205126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctccctgaagtcagcacGagcatccttggggagatgcc	13	12	1	2	rs115584025	byFrequency;by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56205126	T	T	56205126	3	4	137	1	0	0	0	0	1	0	0	0	545	1058	37	3	4255	3	ALPK2	18	56205126	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	15509604	56205126	21872122	156	121291											
ZNF532	55205	broad.mit.edu	37	chr18	56620876	56620876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacaccaaatccatgaatGggaaagagaaattggaaaag	11	5	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56620876	T	T	56620876	3	4	137	1	0	0	0	0	1	0	0	0	18099	1348	47	2	3013	2	ZNF532	18	56620876	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	415750	56620876	21456372	157	121292											
CNDP1	84735	broad.mit.edu	37	chr18	72250879	72250879	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagatcgtccacaagagCgtggtgctaattccgctggg	14	10	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72250879	T	T	72250879	2	4	137	1	0	0	0	0	0	0	0	1	3625	767	27	4		4	CNDP1	18	72250879	Silent	SNP	C	TCGA-49-4501-01A-01D-1265-08	15630003	72250879	5826369	158	121293											
DPY19L3	147991	broad.mit.edu	37	chr19	32930060	32930060	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttaccatcccactgagggaGaactgggcgctgccattctt	10	12	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32930060	A	A	32930060	2	1	137	1	0	0	0	0	0	0	0	1	4782	933	33	4		4	DPY19L3	19	32930060	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08		32930060	26198923	159	121294											
DPY19L3	147991	broad.mit.edu	37	chr19	32930116	32930116	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcaattacatatttcctgaGaccaaacttacagcctcttt	4	11	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32930116	C	C	32930116	3	2	137	1	0	0	0	0	1	0	0	0	4782	942	33	4	717	4	DPY19L3	19	32930116	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	56	32930116	26198867	160	121295											
SIPA1L3	23094	broad.mit.edu	37	chr19	38610025	38610025	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacattccgcaaatccgacGtcttcagagacttcttgctg	7	14	3	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38610025	A	A	38610025	3	1	137	1	0	0	0	0	1	0	0	0	14444	1145	40	4	2397	4	SIPA1L3	19	38610025	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	5679909	38610025	20518958	161	121296											
RASGRP4	115727	broad.mit.edu	37	chr19	38903681	38903681	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttcagggtcataattcttGaacacagacttcagaggagt	9	9	4	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38903681	A	A	38903681	2	1	137	1	0	0	0	0	0	0	0	1	13185	1281	45	4		4	RASGRP4	19	38903681	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	293656	38903681	20225302	162	121297											
CYP2F1	1572	broad.mit.edu	37	chr19	41627459	41627459	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcgactatgatgatgagcGtctgctcaccattatccgcc	8	13	2	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41627459	A	A	41627459	3	1	137	1	0	0	0	0	1	0	0	0	4204	1145	40	4	595	4	CYP2F1	19	41627459	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	2723778	41627459	17501524	163	121298											
CEACAM4	1089	broad.mit.edu	37	chr19	42132119	42132119	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctctcgaccactgtatgCggcccctgggatatttgctt	10	12	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42132119	T	T	42132119	3	4	137	1	0	0	0	0	1	0	0	0	3224	768	27	4	478	4	CEACAM4	19	42132119	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	504660	42132119	16996864	164	121299											
PSG6	5675	broad.mit.edu	37	chr19	43433896	43433896	+	Intron	DEL	T	-	-													tgcggaaaacagagagaagaTtgccctgtgtggcacctttg							TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43433896	-	-	43433896	6	5	137	0	1	1	0	1	0	0	0	0	12765	1508	52	0		0	PSG6	19	43433896	Intron	DEL	T	TCGA-49-4501-01A-01D-1265-08	1301777	43433896	15695087	165	121300											
SIGLEC6	946	broad.mit.edu	37	chr19	52033880	52033880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttaagctctggctcagcCctgccctgtccccccacacc	6	20	2	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52033880	A	A	52033880	1	1	137	0	1	0	0	0	0	0	0	0	14425	638	22	2		2	SIGLEC6	19	52033880	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	8599984	52033880	7095103	166	121301											
PPP2R1A	5518	broad.mit.edu	37	chr19	52716329	52716329	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgaagacaagtcctggcGcgtccgctacatggtggctg	14	12	0	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52716329	A	A	52716329	3	1	137	1	0	0	0	0	1	0	0	0	12483	1087	38	4	795	4	PPP2R1A	19	52716329	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	682449	52716329	6412654	167	121302											
A1BG	1	broad.mit.edu	37	chr19	58862752	58862752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtccctgctggccccggCtcaccatcgctcagaatcag	9	18	3	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58862752	A	A	58862752	1	1	137	0	1	0	0	0	0	0	0	0	1	812	28	3		3	A1BG	19	58862752	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	6146423	58862752	266231	168	121303											
GSS	2937	broad.mit.edu	37	chr20	33516603	33516603	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgacaaatacagaggaTagaaggtcccgtggcctggt	14	7	0	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33516603	C	C	33516603	1	2	137	0	1	0	0	0	0	0	0	0	6895	1421	49	5		5	GSS	20	33516603	3'UTR	SNP	T	TCGA-49-4501-01A-01D-1265-08		33516603	29508917	169	121304											
BRWD1	54014	broad.mit.edu	37	chr21	40569284	40569284	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aactactgtctgagtcactgGaacagacccttttcctggaa	8	11	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40569284	C	C	40569284	3	2	137	1	0	0	0	0	1	0	0	0	1534	1174	41	4	1498	4	BRWD1	21	40569284	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08		40569284	7560611	170	121305											
KRTAP10-5	386680	broad.mit.edu	37	chr21	46000423	46000423	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccaggagtcagagcaagcGctggagcagacggacatggt	16	10	1	2	rs139901000	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46000423	A	A	46000423	2	1	137	1	0	0	0	0	0	0	0	1	8583	1078	38	4		4	KRTAP10-5	21	46000423	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	5431139	46000423	2129472	171	121306											
CABIN1	23523	broad.mit.edu	37	chr22	24432663	24432663	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttctctgtaggtggacCttctcatttctatagaggga	11	8	4	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24432663	T	T	24432663	1	4	137	0	1	0	0	0	0	0	0	0	2554	696	24	4		4	CABIN1	22	24432663	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08		24432663	26871903	172	121307											
ZNRF3	84133	broad.mit.edu	37	chr22	29449563	29449563	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgattgttctctctctttcCcaggaccgagatctcactca	6	13	4	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29449563	G	G	29449563	1	3	137	0	1	0	0	0	0	0	0	0	18342	638	22	4		4	ZNRF3	22	29449563	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	5016900	29449563	21855003	173	121308											
DNAJB7	150353	broad.mit.edu	37	chr22	41257635	41257635	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccataggagcttcctggacGatttaacaggtcctcaagcg	10	11	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41257635	A	A	41257635	3	1	137	1	0	0	0	0	1	0	0	0	4665	1058	37	4	569	4	DNAJB7	22	41257635	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	11808072	41257635	10046931	174	121309											
NAGA	4668	broad.mit.edu	37	chr22	42456372	42456372	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatcactgtgaagttggtttCatctcggaggccactgatga	12	8	3	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42456372	G	G	42456372	3	3	137	1	0	0	0	0	1	0	0	0	10235	835	29	4	92	4	NAGA	22	42456372	Missense_Mutation	SNP	C	TCGA-49-4501-01A-01D-1265-08	1198737	42456372	8848194	175	121310											
MAP7D2	256714	broad.mit.edu	37	chrX	20031731	20031731	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccttgttctcttcatgaTttcatctattctctaaaaac	2	10	5	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20031731	G	G	20031731	3	3	137	1	0	0	0	0	1	0	0	0	9360	1493	52	5	575	5	MAP7D2	23	20031731	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08		20031731	135238829	176	121311											
MAGED1	9500	broad.mit.edu	37	chrX	51645010	51645010	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactttggtgccattggttTcttctgggttgagtgagatg	13	6	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51645010	A	A	51645010	3	1	137	1	0	0	0	0	1	0	0	0	9275	1783	62	5	2535	5	MAGED1	23	51645010	Missense_Mutation	SNP	T	TCGA-49-4501-01A-01D-1265-08	31613279	51645010	103625550	177	121312											
FGD1	2245	broad.mit.edu	37	chrX	54475465	54475465	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttcagcataccaactcCcacagcagacttgtggcctc	6	17	1	1			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54475465	A	A	54475465	1	1	137	0	1	0	0	0	0	0	0	0	5889	638	22	2		2	FGD1	23	54475465	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	2830455	54475465	100795095	178	121313											
ATRX	546	broad.mit.edu	37	chrX	76939965	76939965	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatgtagcaataccattgGttgttttcatccattattgt	6	7	1	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76939965	A	A	76939965	2	1	137	1	0	0	0	0	0	0	0	1	1212	1252	44	4		4	ATRX	23	76939965	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	22464500	76939965	78330595	179	121314											
RBM41	55285	broad.mit.edu	37	chrX	106362173	106362174	+	5'Flank	INS	-	ATGCTGAACATTGTCC	ATGCTGAACATTGTCC													gtagatctcaagtgacaggtINSatgctgaacattgtccaaat					rs71901414		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATGCTGAACATTGTCC	106362174	ATGCTGAACATTGTCC	ATGCTGAACATTGTCC	106362173	6	5	137	0	1	1	1	0	0	0	0	0	13243	1653	57	0		0	RBM41	23	106362173	5'Flank	INS	-	TCGA-49-4501-01A-01D-1265-08	29422208	106362173	48908387	180	121315											
ATP11C	286410	broad.mit.edu	37	chrX	138914391	138914391	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacaatggcagctaaatctCagagagaatgctgcagatta	9	8	1	3			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138914391	T	T	138914391	1	4	137	0	1	0	0	0	0	0	0	0	1125	841	29	4		4	ATP11C	23	138914391	5'UTR	SNP	C	TCGA-49-4501-01A-01D-1265-08	32552218	138914391	16356169	181	121316											
CXorf40A	91966	broad.mit.edu	37	chrX	148628443	148628443	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagcccatacctaggaaaGgaggcaaggatgtattccag	13	8	0	0			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148628443	C	C	148628443	3	2	137	1	0	0	0	0	1	0	0	0	4141	1001	35	4	418	4	CXorf40A	23	148628443	Missense_Mutation	SNP	G	TCGA-49-4501-01A-01D-1265-08	9714052	148628443	6642117	182	121317											
DKC1	1736	broad.mit.edu	37	chrX	153996367	153996367	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctcctgacgtcgtgatcCacccgcctctgcctcccaaa	7	18	2	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153996367	T	T	153996367	1	4	137	0	1	0	0	0	0	0	0	0	4582	609	21	4		4	DKC1	23	153996367	Intron	SNP	C	TCGA-49-4501-01A-01D-1265-08	5367924	153996367	1274193	183	121318											
VAMP7	6845	broad.mit.edu	37	chrX	155127856	155127856	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttacggttcaagagcacaGacagcacttccatatgccat	7	12	1	2			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155127856	A	A	155127856	2	1	137	1	0	0	0	0	0	0	0	1	17244	933	33	4		4	VAMP7	23	155127856	Silent	SNP	G	TCGA-49-4501-01A-01D-1265-08	1131489	155127856	142704	184	121319											
MTHFR	4524	broad.mit.edu	37	chr1	11855491	11855491	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccttccatcatccatgccAaccacagtgtcaggcagagg	8	16	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11855491	T	T	11855491	1	4	138	0	1	0	0	0	0	0	0	0	10025	145	5	5		5	MTHFR	1	11855491	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08		11855491	237395130	1	121320											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12250933	12250933	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctgggctttagaactctgGactttgtggggacagtggat	15	6	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12250933	C	C	12250933	1	2	138	0	1	0	0	0	0	0	0	0	16417	1189	41	4		4	TNFRSF1B	1	12250933	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	395442	12250933	236999688	2	121321											
PADI3	51702	broad.mit.edu	37	chr1	17603314	17603314	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggggcctgcttcaagctcTtccaggaaaagcagaagtgt	12	10	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17603314	C	C	17603314	3	2	138	1	0	0	0	0	1	0	0	0	11473	1609	56	5	1548	5	PADI3	1	17603314	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	5352381	17603314	231647307	3	121322											
PADI4	23569	broad.mit.edu	37	chr1	17634768	17634768	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagcagcccacccatgcCgtgtgtgtgctgggcacctt	12	15	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17634768	A	A	17634768	2	1	138	1	0	0	0	0	0	0	0	1	11474	639	23	1		1	PADI4	1	17634768	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	31454	17634768	231615853	4	121323											
CELA3B	23436	broad.mit.edu	37	chr1	22305038	22305038	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccttgacaccattgctcCctttgcaatgtccacttcag	6	15	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22305038	T	T	22305038	1	4	138	0	1	0	0	0	0	0	0	0	3244	638	22	4		4	CELA3B	1	22305038	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	4670270	22305038	226945583	5	121324											
MYOM3	127294	broad.mit.edu	37	chr1	24434529	24434529	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagggctgctgccagggCgtagtccgcggcgctgaact	16	13	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24434529	T	T	24434529	3	4	138	1	0	0	0	0	1	0	0	0	10187	768	27	4	4257	4	MYOM3	1	24434529	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2129491	24434529	224816092	6	121325											
CATSPER4	378807	broad.mit.edu	37	chr1	26524847	26524847	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccagaacatacaggttgCgctgtacaccctcttcatct	6	13	3	1	rs149779483	byFrequency	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26524847	T	T	26524847	3	4	138	1	0	0	0	0	1	0	0	0	2716	768	27	4	771	4	CATSPER4	1	26524847	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2090318	26524847	222725774	7	121326											
CCDC28B	79140	broad.mit.edu	37	chr1	32667458	32667458	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagctctcagggatttcTgggtgaagggctaactttgc	14	8	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32667458	A	A	32667458	1	1	138	0	1	0	0	0	0	0	0	0	2830	1595	55	5		5	CCDC28B	1	32667458	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	6142611	32667458	216583163	8	121327											
UTP11L	51118	broad.mit.edu	37	chr1	38478257	38478257	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatagagtcacgagactaTatctgggaaactacacttcc	7	10	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38478257	C	C	38478257	1	2	138	0	1	0	0	0	0	0	0	0	17221	1421	49	5		5	UTP11L	1	38478257	5'Flank	SNP	T	TCGA-49-4505-01A-01D-1265-08	5810799	38478257	210772364	9	121328											
ST3GAL3	6487	broad.mit.edu	37	chr1	44257943	44257943	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcccagaattgggggaagtCtcaagaagcctttctagaga	11	8	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44257943	T	T	44257943	1	4	138	0	1	0	0	0	0	0	0	0	15334	928	32	4		4	ST3GAL3	1	44257943	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	5779686	44257943	204992678	10	121329											
GPBP1L1	60313	broad.mit.edu	37	chr1	46096395	46096395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccaaaagacagcctcagCccacagatttttttccccat	4	14	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46096395	A	A	46096395	1	1	138	0	1	0	0	0	0	0	0	0	6661	754	26	3		3	GPBP1L1	1	46096395	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1838452	46096395	203154226	11	121330											
HSPB11	51668	broad.mit.edu	37	chr1	54395706	54395706	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaattaatgtaagatttGcttaccaaagtaactttgga	6	4	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54395706	A	A	54395706	1	1	138	0	1	0	0	0	0	0	0	0	7488	1334	46	4		4	HSPB11	1	54395706	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	8299311	54395706	194854915	12	121331											
ANKRD13C	81573	broad.mit.edu	37	chr1	70779419	70779419	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttatactaaaacatagcaTactcttaccccagctttgaa	3	10	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70779419	G	G	70779419	1	3	138	0	1	0	0	0	0	0	0	0	643	1421	49	5		5	ANKRD13C	1	70779419	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	16383713	70779419	178471202	13	121332											
LHX8	431707	broad.mit.edu	37	chr1	75609600	75609600	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccaaaaccagcaaaaagAgctcggaccagctttacagc	7	13	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75609600	T	T	75609600	3	4	138	1	0	0	0	0	1	0	0	0	8848	301	11	5	703	5	LHX8	1	75609600	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	4830181	75609600	173641021	14	121333											
LPHN2	23266	broad.mit.edu	37	chr1	82062284	82062284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggatcagagctccgcacCacctacgacagtgtcttccc	10	16	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82062284	A	A	82062284	1	1	138	0	1	0	0	0	0	0	0	0	9003	609	21	2		2	LPHN2	1	82062284	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	6452684	82062284	167188337	15	121334											
HFM1	164045	broad.mit.edu	37	chr1	91816323	91816323	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatggatttttcaaggctctGatataaagcagagttgatcg	11	5	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91816323	T	T	91816323	2	4	138	1	0	0	0	0	0	0	0	1	7150	1280	45	3		3	HFM1	1	91816323	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	9754039	91816323	157434298	16	121335											
CDC14A	8556	broad.mit.edu	37	chr1	100928175	100928175	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggaagatgaaatgcatGccttttgcttactgctcctt	9	8	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100928175	A	A	100928175	1	1	138	0	1	0	0	0	0	0	0	0	3086	1334	46	4		4	CDC14A	1	100928175	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	9111852	100928175	148322446	17	121336											
NTNG1	22854	broad.mit.edu	37	chr1	107950661	107950662	+	Intron	DNP	CC	AA	AA													tatttatccatacttagcaaCcaacaaacaaattgaactct							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	107950662	AA	AA	107950661	1	1	138	0	1	0	0	0	0	0	0	0	10799	522	18	3		3	NTNG1	1	107950661	Intron	DNP	CC	TCGA-49-4505-01A-01D-1265-08	7022486	107950661	141299960	18	121337											
EPS8L3	79574	broad.mit.edu	37	chr1	110294457	110294457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttccagccagccttccCtccccacacaaggctttctc	4	20	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110294457	A	A	110294457	1	1	138	0	1	0	0	0	0	0	0	0	5239	696	24	2		2	EPS8L3	1	110294457	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2343796	110294457	138956164	19	121338											
S100A13	6284	broad.mit.edu	37	chr1	153591308	153591308	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggaagctttatttgggaaGagtgcggttctgctcggccc	15	8	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153591308	T	T	153591308	1	4	138	0	1	0	0	0	0	0	0	0	13886	957	33	3		3	S100A13	1	153591308	3'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	43296851	153591308	95659313	20	121339											
RPS27	6232	broad.mit.edu	37	chr1	153963202	153963202	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcgtcatttcctgtagtGtgctctatataaggggcagg	12	8	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153963202	A	A	153963202	1	1	138	0	1	0	0	0	0	0	0	0	13749	1392	48	4		4	RPS27	1	153963202	5'Flank	SNP	G	TCGA-49-4505-01A-01D-1265-08	371894	153963202	95287419	21	121340											
OR6N2	81442	broad.mit.edu	37	chr1	158747139	158747139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtaggtctgaaggaggcatCctgcaaaagaaatggttttc	12	6	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158747139	A	A	158747139	3	1	138	1	0	0	0	0	1	0	0	0	11301	855	30	3	669	3	OR6N2	1	158747139	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	4783937	158747139	90503482	22	121341											
STX6	10228	broad.mit.edu	37	chr1	180953988	180953988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggttaaaaggaccaggCctccattttagcaaacaaaa	8	9	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180953988	A	A	180953988	1	1	138	0	1	0	0	0	0	0	0	0	15467	754	26	3		3	STX6	1	180953988	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	22206849	180953988	68296633	23	121342											
NMNAT2	23057	broad.mit.edu	37	chr1	183221613	183221613	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagatgactgtggaataGggaatgccatggttctctgc	12	8	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183221613	T	T	183221613	1	4	138	0	1	0	0	0	0	0	0	0	10594	1015	35	2		2	NMNAT2	1	183221613	3'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	2267625	183221613	66029008	24	121343											
HMCN1	83872	broad.mit.edu	37	chr1	186120576	186120576	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagaatgctactactaactCataagtatggtaagctttta	7	6	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186120576	A	A	186120576	1	1	138	0	1	0	0	0	0	0	0	0	7287	841	29	3		3	HMCN1	1	186120576	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2898963	186120576	63130045	25	121344											
HMCN1	83872	broad.mit.edu	37	chr1	186121913	186121913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgagtcatattgcccgGggcttggattccgatggttc	13	9	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186121913	T	T	186121913	2	4	138	1	0	0	0	0	0	0	0	1	7287	1219	43	2		2	HMCN1	1	186121913	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	1337	186121913	63128708	26	121345											
TROVE2	6738	broad.mit.edu	37	chr1	193029172	193029172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgggaccgctcctgcttGtcggcatcgctccccacagg	12	17	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193029172	T	T	193029172	1	4	138	0	1	0	0	0	0	0	0	0	16701	1392	48	3		3	TROVE2	1	193029172	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	6907259	193029172	56221449	27	121346											
ADIPOR1	51094	broad.mit.edu	37	chr1	202912952	202912952	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgccacaatgatggcagaaaTgcccaggacacagacgatgg	12	11	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202912952	G	G	202912952	3	3	138	1	0	0	0	0	1	0	0	0	318	1464	51	5	400	5	ADIPOR1	1	202912952	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	9883780	202912952	46337669	28	121347											
NFASC	23114	broad.mit.edu	37	chr1	204937915	204937915	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacttgtttcctgcttggcGcctctcctagcccaacacca	6	16	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204937915	A	A	204937915	1	1	138	0	1	0	0	0	0	0	0	0	10454	1102	38	4		4	NFASC	1	204937915	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	2024963	204937915	44312706	29	121348											
RASSF5	83593	broad.mit.edu	37	chr1	206702435	206702435	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatatcaggttgcaaaggcAgggagccatcctctacaagt	10	10	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206702435	G	G	206702435	1	3	138	0	1	0	0	0	0	0	0	0	13197	203	7	5		5	RASSF5	1	206702435	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	1764520	206702435	42548186	30	121349											
KCNH1	3756	broad.mit.edu	37	chr1	210970995	210970995	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactccatggccagtgcccgGaggcagccatcactggccag	12	15	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210970995	T	T	210970995	2	4	138	1	0	0	0	0	0	0	0	1	8101	1161	41	3		3	KCNH1	1	210970995	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	4268560	210970995	38279626	31	121350											
RCOR3	55758	broad.mit.edu	37	chr1	211449715	211449715	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataaagtcctatttgaacaAgcctttagttttcatggaaa	7	6	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211449715	T	T	211449715	3	4	138	1	0	0	0	0	1	0	0	0	13292	69	3	5	489	5	RCOR3	1	211449715	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	478720	211449715	37800906	32	121351											
USH2A	7399	broad.mit.edu	37	chr1	216172523	216172523	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaacataaatctcaaaaTtgattcatttaaaataaaac	1	5	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216172523	G	G	216172523	1	3	138	0	1	0	0	0	0	0	0	0	17162	1508	52	5		5	USH2A	1	216172523	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	4722808	216172523	33078098	33	121352											
USH2A	7399	broad.mit.edu	37	chr1	216246606	216246606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagttaacgacagcacccCgtgtaaatttaacatccttc	5	13	0	0	rs111033409		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216246606	A	A	216246606	3	1	138	1	0	0	0	0	1	0	0	0	17162	652	23	1	10179	1	USH2A	1	216246606	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	74083	216246606	33004015	34	121353											
USH2A	7399	broad.mit.edu	37	chr1	216495184	216495184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatagtcaccatctctaCtattttttttttagatttcc	2	8	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216495184	A	A	216495184	1	1	138	0	1	0	0	0	0	0	0	0	17162	580	20	3		3	USH2A	1	216495184	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	248578	216495184	32755437	35	121354											
ACTN2	88	broad.mit.edu	37	chr1	236891000	236891000	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagatggccttggactcTgtgccctcatccaccgacac	10	14	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236891000	A	A	236891000	3	1	138	1	0	0	0	0	1	0	0	0	205	1580	55	5	581	5	ACTN2	1	236891000	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	20395816	236891000	12359621	36	121355											
RYR2	6262	broad.mit.edu	37	chr1	237777623	237777623	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgtccccatgacggaggAgacgaagagcatcaccctgt	11	12	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237777623	G	G	237777623	3	3	138	1	0	0	0	0	1	0	0	0	13880	304	11	5	5341	5	RYR2	1	237777623	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	886623	237777623	11472998	37	121356											
RYR2	6262	broad.mit.edu	37	chr1	237837378	237837378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattactatgctgtgttcttGtcctgacatactcttaggag	8	8	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237837378	T	T	237837378	1	4	138	0	1	0	0	0	0	0	0	0	13880	1392	48	3		3	RYR2	1	237837378	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	59755	237837378	11413243	38	121357											
RYR2	6262	broad.mit.edu	37	chr1	237880547	237880547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaagcgcaaaggagatcGgtattccatgcagacctctc	10	10	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237880547	T	T	237880547	3	4	138	1	0	0	0	0	1	0	0	0	13880	1116	39	1	10659	1	RYR2	1	237880547	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	43169	237880547	11370074	39	121358											
RGS7	6000	broad.mit.edu	37	chr1	240979707	240979707	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatatcattttgtaaaccAtagacagactatattaaaat	3	6	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240979707	G	G	240979707	2	3	138	1	0	0	0	0	0	0	0	1	13419	224	8	5		5	RGS7	1	240979707	Silent	SNP	A	TCGA-49-4505-01A-01D-1265-08	3099160	240979707	8270914	40	121359											
NLRP3	114548	broad.mit.edu	37	chr1	247592823	247592823	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccaggcaccccggccccCagctccagttagttattatt	9	15	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247592823	T	T	247592823	1	4	138	0	1	0	0	0	0	0	0	0	10573	609	21	4		4	NLRP3	1	247592823	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	6613116	247592823	1657798	41	121360											
OR2L2	26246	broad.mit.edu	37	chr1	248201977	248201977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactatcccatccgtataagCaaaagagtgtgtgtgatgat	9	8	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248201977	A	A	248201977	3	1	138	1	0	0	0	0	1	0	0	0	11101	709	25	3	410	3	OR2L2	1	248201977	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	609154	248201977	1048644	42	121361											
OR2T3	343173	broad.mit.edu	37	chr1	248637257	248637257	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtctccctctataagacGctcatgtacctgtgctgcat	8	13	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248637257	T	T	248637257	2	4	138	1	0	0	0	0	0	0	0	1	11117	1074	38	3		3	OR2T3	1	248637257	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	435280	248637257	613364	43	121362											
SOX11	6664	broad.mit.edu	37	chr2	5833563	5833563	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgacgacgacgagctgcagcTgcagatcaaacaggagccgg	14	12	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5833563	A	A	5833563	3	1	138	1	0	0	0	0	1	0	0	0	15056	1580	55	5	712	5	SOX11	2	5833563	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08		5833563	237365810	44	121363											
ADAM17	6868	broad.mit.edu	37	chr2	9642186	9642186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgccagaaactcaaccCggcatatgagattaaaaata	9	8	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9642186	A	A	9642186	1	1	138	0	1	0	0	0	0	0	0	0	238	667	23	1		1	ADAM17	2	9642186	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	3808623	9642186	233557187	45	121364											
BIRC6	57448	broad.mit.edu	37	chr2	32688372	32688372	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagctttgcagtctctctctCatgcaatggcttcagccgag	9	12	4	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32688372	T	T	32688372	3	4	138	1	0	0	0	0	1	0	0	0	1444	826	29	4	4958	4	BIRC6	2	32688372	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	23046186	32688372	210511001	46	121365											
ASB3	51130	broad.mit.edu	37	chr2	53956000	53956000	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctaaagcacagattcAcattttaaataagaaaaaaa	3	6	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53956000	G	G	53956000	1	3	138	0	1	0	0	0	0	0	0	0	1028	174	6	5		5	ASB3	2	53956000	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	21267628	53956000	189243373	47	121366											
DGUOK	1716	broad.mit.edu	37	chr2	74166086	74166086	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcacgaaaacttacccagaAtggcacgtagctacagaacc	7	13	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74166086	G	G	74166086	2	3	138	1	0	0	0	0	0	0	0	1	4515	98	4	5		5	DGUOK	2	74166086	Silent	SNP	A	TCGA-49-4505-01A-01D-1265-08	20210086	74166086	169033287	48	121367											
KDM3A	55818	broad.mit.edu	37	chr2	86683860	86683860	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctattgttatgttaatgAacctgattttcagtatgttc	6	7	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86683860	C	C	86683860	1	2	138	0	1	0	0	0	0	0	0	0	8196	261	9	5		5	KDM3A	2	86683860	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	12517774	86683860	156515513	49	121368											
RMND5A	64795	broad.mit.edu	37	chr2	86993215	86993215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttcccttaacttgtttgGttcttgatgtttaaagccaa	6	9	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86993215	T	T	86993215	1	4	138	0	1	0	0	0	0	0	0	0	13508	1276	44	3		3	RMND5A	2	86993215	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	309355	86993215	156206158	50	121369											
ARID5A	10865	broad.mit.edu	37	chr2	97214934	97214934	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagaacagtggctaggTgttctctgggaaactggggt	14	9	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97214934	G	G	97214934	1	3	138	0	1	0	0	0	0	0	0	0	923	1711	59	5		5	ARID5A	2	97214934	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	10221719	97214934	145984439	51	121370											
EPB41L5	57669	broad.mit.edu	37	chr2	120851008	120851008	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacatgtaatgccagataaAagtgacatgatgaaaaatta	8	4	0	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120851008	T	T	120851008	1	4	138	0	1	0	0	0	0	0	0	0	5199	29	1	5		5	EPB41L5	2	120851008	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	23636074	120851008	122348365	52	121371											
CNTNAP5	129684	broad.mit.edu	37	chr2	125192268	125192268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacacctcaatttgggtaGgctcagacttcctcttccaa	6	14	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125192268	T	T	125192268	1	4	138	0	1	0	0	0	0	0	0	0	3682	1015	35	2		2	CNTNAP5	2	125192268	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	4341260	125192268	118007105	53	121372											
GYPC	2995	broad.mit.edu	37	chr2	127447933	127447933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataatggaaactgccgtgaCttcagatgagctctcatcac	8	11	3	3	rs55928142		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127447933	A	A	127447933	1	1	138	0	1	0	0	0	0	0	0	0	6975	580	20	3		3	GYPC	2	127447933	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2255665	127447933	115751440	54	121373											
WDR33	55339	broad.mit.edu	37	chr2	128526403	128526403	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatattttaattataaaaaTgtaaaaagaaaagaccattt	4	2	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128526403	C	C	128526403	1	2	138	0	1	0	0	0	0	0	0	0	17414	1479	51	5		5	WDR33	2	128526403	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	1078470	128526403	114672970	55	121374											
NCKAP5	344148	broad.mit.edu	37	chr2	133540623	133540623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggtttgctggaggaaaggGatcttctcatggatctatta	13	5	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133540623	T	T	133540623	3	4	138	1	0	0	0	0	1	0	0	0	10318	1174	41	3	1996	3	NCKAP5	2	133540623	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	5014220	133540623	109658750	56	121375											
ACMSD	130013	broad.mit.edu	37	chr2	135630345	135630345	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggagagagacagtgagGtttgggattaggtttgctca	16	3	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135630345	C	C	135630345	1	2	138	0	1	0	0	0	0	0	0	0	144	1276	44	4		4	ACMSD	2	135630345	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	2089722	135630345	107569028	57	121376											
STAM2	10254	broad.mit.edu	37	chr2	152991938	152991938	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaacaaaagttaaatgccAatctactttacatccaaaac	2	9	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152991938	T	T	152991938	1	4	138	0	1	0	0	0	0	0	0	0	15367	145	5	5		5	STAM2	2	152991938	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	17361593	152991938	90207435	58	121377											
ARL6IP6	151188	broad.mit.edu	37	chr2	153575351	153575351	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagcccagaaagcgctcGgtgctcccgccggacgggaa	14	14	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153575351	T	T	153575351	2	4	138	1	0	0	0	0	0	0	0	1	949	1103	39	1		1	ARL6IP6	2	153575351	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	583413	153575351	89624022	59	121378											
SLC4A10	57282	broad.mit.edu	37	chr2	162830770	162830770	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcaggaagaacaaagTatgctagctatggaagatga	10	5	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162830770	C	C	162830770	2	2	138	1	0	0	0	0	0	0	0	1	14765	1635	57	5		5	SLC4A10	2	162830770	Silent	SNP	T	TCGA-49-4505-01A-01D-1265-08	9255419	162830770	80368603	60	121379											
MYO3B	140469	broad.mit.edu	37	chr2	171240387	171240387	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatgttgtgtcttcctcgtCaactcctaagtcttcctgaa	6	12	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171240387	A	A	171240387	1	1	138	0	1	0	0	0	0	0	0	0	10171	841	29	3		3	MYO3B	2	171240387	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	8409617	171240387	71958986	61	121380											
TTN	7273	broad.mit.edu	37	chr2	179526477	179526477	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctgaagcctaaaatcagtGacaaatacctttaacaggtg	7	8	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179526477	A	A	179526477	1	1	138	0	1	0	0	0	0	0	0	0	16861	1305	45	4		4	TTN	2	179526477	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	8286090	179526477	63672896	62	121381											
TTN	7273	broad.mit.edu	37	chr2	179577475	179577475	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgccagcttcattgctaaCtatgcaagtatattctccac	5	12	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179577475	T	T	179577475	3	4	138	1	0	0	0	0	1	0	0	0	16861	565	20	4	77328	4	TTN	2	179577475	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	50998	179577475	63621898	63	121382											
SESTD1	91404	broad.mit.edu	37	chr2	179986618	179986618	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attggagatctgatccaggaGaccttgacctttttcacgca	9	10	2	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179986618	C	C	179986618	3	2	138	1	0	0	0	0	1	0	0	0	14240	942	33	4	793	4	SESTD1	2	179986618	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	409143	179986618	63212755	64	121383											
ITGA4	3676	broad.mit.edu	37	chr2	182400123	182400123	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagataagagagtgttcatAactatacactagtgattatg	9	4	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182400123	C	C	182400123	1	2	138	0	1	0	0	0	0	0	0	0	7948	377	13	5		5	ITGA4	2	182400123	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	2413505	182400123	60799250	65	121384											
PDE1A	5136	broad.mit.edu	37	chr2	183095827	183095827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacttgcttcatttaggGcaaatacatcgaaagaccat	6	11	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183095827	T	T	183095827	3	4	138	1	0	0	0	0	1	0	0	0	11727	1203	42	3	1228	3	PDE1A	2	183095827	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	695704	183095827	60103546	66	121385											
DNAJC10	54431	broad.mit.edu	37	chr2	183597269	183597269	+	Frame_Shift_Del	DEL	G	-	-													ctcaggcttagtggcatgttGgtaagcatcaatcattttgt							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	183597269	-	-	183597269	7	5	138	1	0	1	0	1	0	0	0	0	4669	1362	47	0	879	0	DNAJC10	2	183597269	Frame_Shift_Del	DEL	G	TCGA-49-4505-01A-01D-1265-08	501442	183597269	59602104	67	121386											
TMEFF2	23671	broad.mit.edu	37	chr2	192818283	192818283	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcttatgctaaggacataGgactcatagagaatggatgg	11	6	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192818283	A	A	192818283	1	1	138	0	1	0	0	0	0	0	0	0	16137	1015	35	4		4	TMEFF2	2	192818283	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	9221014	192818283	50381090	68	121387											
ALS2	57679	broad.mit.edu	37	chr2	202580593	202580593	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catatcaaccttttattaatCatttcttttgtgcaaaattg	3	7	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202580593	A	A	202580593	1	1	138	0	1	0	0	0	0	0	0	0	550	841	29	3		3	ALS2	2	202580593	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	9762310	202580593	40618780	69	121388											
NDUFS1	4719	broad.mit.edu	37	chr2	206992595	206992595	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgctaccttagtctgctGagctctaccctcagtgttga	8	13	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206992595	A	A	206992595	4	1	138	1	0	0	0	0	0	1	0	0	10386	1299	45	4	389	4	NDUFS1	2	206992595	Nonsense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	4412002	206992595	36206778	70	121389											
ABCA12	26154	broad.mit.edu	37	chr2	215834912	215834912	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtaaaatgtaaacaataGaaatttgtatctattgtctc	5	5	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215834912	A	A	215834912	1	1	138	0	1	0	0	0	0	0	0	0	30	957	33	4		4	ABCA12	2	215834912	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	8842317	215834912	27364461	71	121390											
SP140	11262	broad.mit.edu	37	chr2	231134799	231134799	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttgacctgagcctttgggGagctgcagggaggcaagaga	17	8	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231134799	T	T	231134799	1	4	138	0	1	0	0	0	0	0	0	0	15076	1189	41	3		3	SP140	2	231134799	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	15299887	231134799	12064574	72	121391											
COPS7B	64708	broad.mit.edu	37	chr2	232672167	232672167	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggtgagcacatacaggctGagcactccaattctatatct	8	10	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232672167	A	A	232672167	1	1	138	0	1	0	0	0	0	0	0	0	3771	1305	45	4		4	COPS7B	2	232672167	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1537368	232672167	10527206	73	121392											
DIS3L2	129563	broad.mit.edu	37	chr2	233195486	233195486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgctcccggcccatgcaGgtaaggagggcccagccccg	14	15	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233195486	T	T	233195486	3	4	138	1	0	0	0	0	1	0	0	0	4577	1014	35	2	2068	2	DIS3L2	2	233195486	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	523319	233195486	10003887	74	121393											
HJURP	55355	broad.mit.edu	37	chr2	234762681	234762681	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgccccaaacgcggtctcTgcagcggagcccccaactcc	11	19	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234762681	C	C	234762681	1	2	138	0	1	0	0	0	0	0	0	0	7256	1595	55	5		5	HJURP	2	234762681	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	1567195	234762681	8436692	75	121394											
COL6A3	1293	broad.mit.edu	37	chr2	238267600	238267600	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagcgggcttgatgtatatGaggaaagaaaataactattc	11	4	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238267600	T	T	238267600	1	4	138	0	1	0	0	0	0	0	0	0	3733	1305	45	3		3	COL6A3	2	238267600	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	3504919	238267600	4931773	76	121395											
RBM44	375316	broad.mit.edu	37	chr2	238730509	238730509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaatgcaaatctttaaGtgtatggtttacgtaaagta	7	5	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238730509	T	T	238730509	1	4	138	0	1	0	0	0	0	0	0	0	13246	1044	36	3		3	RBM44	2	238730509	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	462909	238730509	4468864	77	121396											
CHL1	10752	broad.mit.edu	37	chr3	433341	433341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgatgtgagtttatttttGgtcttgtgttttctagtacc	9	4	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	433341	A	A	433341	1	1	138	0	1	0	0	0	0	0	0	0	3380	1363	47	4		4	CHL1	3	433341	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08		433341	197589089	78	121397											
FGD5	152273	broad.mit.edu	37	chr3	14922045	14922045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctagaaaccactgatgcCtgtcccacctgattgctctc	6	16	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14922045	T	T	14922045	1	4	138	0	1	0	0	0	0	0	0	0	5893	696	24	4		4	FGD5	3	14922045	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	14488704	14922045	183100385	79	121398											
FGD5	152273	broad.mit.edu	37	chr3	14964604	14964604	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acccgctgaagtacctgaagGacaggatggccaaggtctgc	13	11	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14964604	A	A	14964604	3	1	138	1	0	0	0	0	1	0	0	0	5893	1174	41	4	3921	4	FGD5	3	14964604	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	42559	14964604	183057826	80	121399											
GALNTL2	117248	broad.mit.edu	37	chr3	16261282	16261282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagtggcttcagctttaCcacacctgttgttgtggcct	11	11	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16261282	A	A	16261282	1	1	138	0	1	0	0	0	0	0	0	0	6284	522	18	3		3	GALNTL2	3	16261282	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1296678	16261282	181761148	81	121400											
ZNF385D	79750	broad.mit.edu	37	chr3	21478677	21478677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcgtcgttgatattgctGgtgtccctgcagtaccgtct	11	10	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21478677	T	T	21478677	3	4	138	1	0	0	0	0	1	0	0	0	18004	1348	47	2	745	2	ZNF385D	3	21478677	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	5217395	21478677	176543753	82	121401											
SCN10A	6336	broad.mit.edu	37	chr3	38798230	38798230	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctttgcttcaatttcatCagtggttgcctggttctgct	8	11	4	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38798230	A	A	38798230	3	1	138	1	0	0	0	0	1	0	0	0	14025	826	29	3	4721	3	SCN10A	3	38798230	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	17319553	38798230	159224200	83	121402											
SCN10A	6336	broad.mit.edu	37	chr3	38835166	38835166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccaaggaggactttctgGgctgggtgggaccgagactt	18	8	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38835166	T	T	38835166	1	4	138	0	1	0	0	0	0	0	0	0	14025	1247	43	2		2	SCN10A	3	38835166	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	36936	38835166	159187264	84	121403											
SCN10A	6336	broad.mit.edu	37	chr3	38835490	38835490	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagtttcgagggatccaatGgggaattccatcttctcatt	9	8	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835490	A	A	38835490	2	1	138	1	0	0	0	0	0	0	0	1	14025	1335	47	4		4	SCN10A	3	38835490	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	324	38835490	159186940	85	121404											
COL7A1	1294	broad.mit.edu	37	chr3	48614316	48614316	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaaactccaatactcaCttctctcccagaggcgcctg	7	15	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48614316	T	T	48614316	5	4	138	1	0	0	0	0	0	0	1	0	3736	579	20	4	3441	4	COL7A1	3	48614316	Splice_Site	SNP	C	TCGA-49-4505-01A-01D-1265-08	9778826	48614316	149408114	86	121405											
CELSR3	1951	broad.mit.edu	37	chr3	48689456	48689456	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagcagggccggggagccaGagggtgtggagccgagccac	20	10	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48689456	A	A	48689456	3	1	138	1	0	0	0	0	1	0	0	0	3253	942	33	4	4257	4	CELSR3	3	48689456	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	75140	48689456	149332974	87	121406											
CACNA2D3	55799	broad.mit.edu	37	chr3	54913187	54913187	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaattagctttgaaagcTatatctggaataaatatctt	6	4	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54913187	A	A	54913187	1	1	138	0	1	0	0	0	0	0	0	0	2576	1537	53	5		5	CACNA2D3	3	54913187	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	6223731	54913187	143109243	88	121407											
DNASE1L3	1776	broad.mit.edu	37	chr3	58190433	58190433	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttaatgggctcatgctcaaGgctgctgcgcattcatgggc	12	11	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58190433	C	C	58190433	1	2	138	0	1	0	0	0	0	0	0	0	4703	1015	35	4		4	DNASE1L3	3	58190433	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	3277246	58190433	139831997	89	121408											
SLC25A26	115286	broad.mit.edu	37	chr3	66376823	66376823	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggctcttcttcctgaggaGgggttgcctgccctggtaga	15	10	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66376823	A	A	66376823	1	1	138	0	1	0	0	0	0	0	0	0	14603	1015	35	4		4	SLC25A26	3	66376823	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	8186390	66376823	131645607	90	121409											
ROBO2	6092	broad.mit.edu	37	chr3	77089846	77089846	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaggaaagtctaaactttGgacctacctctttttttgat	6	8	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77089846	A	A	77089846	1	1	138	0	1	0	0	0	0	0	0	0	13625	1363	47	4		4	ROBO2	3	77089846	5'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	10713023	77089846	120932584	91	121410											
POU1F1	5449	broad.mit.edu	37	chr3	87311358	87311358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatgcacagctgccaggGcctccccaacatttgtctgg	10	15	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87311358	T	T	87311358	3	4	138	1	0	0	0	0	1	0	0	0	12365	1203	42	3	420	3	POU1F1	3	87311358	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	10221512	87311358	110711072	92	121411											
RETNLB	84666	broad.mit.edu	37	chr3	108474545	108474545	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaacaaatgaagtgggacGtttgagttagatttcttggt	13	3	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108474545	A	A	108474545	1	1	138	0	1	0	0	0	0	0	0	0	13345	1160	40	4		4	RETNLB	3	108474545	3'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	21163187	108474545	89547885	93	121412											
TMPRSS7	344805	broad.mit.edu	37	chr3	111796027	111796027	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatggtcatgcccttcccctGcagaggatgataaggtgttt	11	9	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111796027	C	C	111796027	1	2	138	0	1	0	0	0	0	0	0	0	16375	1334	46	4		4	TMPRSS7	3	111796027	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	3321482	111796027	86226403	94	121413											
RABL3	285282	broad.mit.edu	37	chr3	120417347	120417347	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcatggcgctttgtttcatGaatctggtccagtttagtcc	9	9	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120417347	C	C	120417347	3	2	138	1	0	0	0	0	1	0	0	0	13080	1290	45	4	269	4	RABL3	3	120417347	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	8621320	120417347	77605083	95	121414											
STXBP5L	9515	broad.mit.edu	37	chr3	120876387	120876387	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attggcatcatgagggcaaaCagttcatgtgcagccattca	10	9	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120876387	G	G	120876387	3	3	138	1	0	0	0	0	1	0	0	0	15475	479	17	4	820	4	STXBP5L	3	120876387	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	459040	120876387	77146043	96	121415											
HCLS1	3059	broad.mit.edu	37	chr3	121355331	121355331	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggccaccaaagcccttggCataatctgcaggacagaaag	10	12	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121355331	T	T	121355331	3	4	138	1	0	0	0	0	1	0	0	0	7061	710	25	4	917	4	HCLS1	3	121355331	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	478944	121355331	76667099	97	121416											
PARP14	54625	broad.mit.edu	37	chr3	122411086	122411086	+	Intron	DEL	T	-	-													agtgccttgtgataacttacTttgctaagaccatggtagat							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122411086	-	-	122411086	6	5	138	0	1	1	0	1	0	0	0	0	11552	1624	56	0		0	PARP14	3	122411086	Intron	DEL	T	TCGA-49-4505-01A-01D-1265-08	1055755	122411086	75611344	98	121417											
ZIC1	7545	broad.mit.edu	37	chr3	147130409	147130409	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacgagcgacaagccctatCtttgcaagatgtgcgacaag	10	11	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147130409	A	A	147130409	3	1	138	1	0	0	0	0	1	0	0	0	17804	913	32	3	1093	3	ZIC1	3	147130409	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	24719323	147130409	50892021	99	121418											
GPR149	344758	broad.mit.edu	37	chr3	154147302	154147302	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatgtcaagcaaaaaagatAgatattcagggttcctggcg	10	7	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154147302	T	T	154147302	3	4	138	1	0	0	0	0	1	0	0	0	6719	420	15	5	2108	5	GPR149	3	154147302	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	7016893	154147302	43875128	100	121419											
SI	6476	broad.mit.edu	37	chr3	164756867	164756867	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatgttaaggttacttacaGattcataatcataccaaata	5	6	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164756867	A	A	164756867	3	1	138	1	0	0	0	0	1	0	0	0	14410	956	33	4	3299	4	SI	3	164756867	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	10609565	164756867	33265563	101	121420											
SAMD7	344658	broad.mit.edu	37	chr3	169656275	169656275	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattcctaaaggaattgagcGaggtagtatgagaaactaaa	10	4	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169656275	A	A	169656275	3	1	138	1	0	0	0	0	1	0	0	0	13935	1058	37	4	1348	4	SAMD7	3	169656275	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	4899408	169656275	28366155	102	121421											
CCDC39	339829	broad.mit.edu	37	chr3	180377397	180377397	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagagcaaagaacatttcTgtgaatttaagtggttttgc	10	5	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180377397	A	A	180377397	1	1	138	0	1	0	0	0	0	0	0	0	2838	1595	55	5		5	CCDC39	3	180377397	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	10721122	180377397	17645033	103	121422											
MASP1	5648	broad.mit.edu	37	chr3	186968219	186968219	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctccacacgtgtcttgatCtcgactgagattttccaccc	7	14	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186968219	A	A	186968219	1	1	138	0	1	0	0	0	0	0	0	0	9414	928	32	3		3	MASP1	3	186968219	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	6590822	186968219	11054211	104	121423											
CPN2	1370	broad.mit.edu	37	chr3	194062055	194062055	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctgccttgctttcgtcCggccacgtgacctggaagcc	10	18	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194062055	T	T	194062055	2	4	138	1	0	0	0	0	0	0	0	1	3842	639	23	4		4	CPN2	3	194062055	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	7093836	194062055	3960375	105	121424											
ZNF718	255403	broad.mit.edu	37	chr4	106368	106368	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcttcaacttgtgggttaGagatccttgttacataccca	7	10	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106368	C	C	106368	1	2	138	0	1	0	0	0	0	0	0	0	18248	957	33	4		4	ZNF718	4	106368	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08		106368	191047908	106	121425											
TMEM175	84286	broad.mit.edu	37	chr4	944247	944261	+	In_Frame_Del	DEL	GATTGCCGTCTACCT	-	-													cagaggcttctggcaacacgGattgccgtctacctgatgac					rs142778595	byFrequency;by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	944261	-	-	944247	7	5	138	1	0	1	0	1	0	0	0	0	16214	1161	41	0	241	0	TMEM175	4	944247	In_Frame_Del	DEL	GATTGCCGTCTACCT	TCGA-49-4505-01A-01D-1265-08	837879	944247	190210029	107	121426											
WHSC1	7468	broad.mit.edu	37	chr4	1902791	1902791	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatacatgaatgggaagcCtctctttgaatcttccattt	6	9	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1902791	T	T	1902791	3	4	138	1	0	0	0	0	1	0	0	0	17489	681	24	4	412	4	WHSC1	4	1902791	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	958544	1902791	189251485	108	121427											
STX18	53407	broad.mit.edu	37	chr4	4508866	4508866	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaagccaggtgagttccaAagaatgctagcaacacagta	10	8	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4508866	C	C	4508866	1	2	138	0	1	0	0	0	0	0	0	0	15459	29	1	5		5	STX18	4	4508866	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	2606075	4508866	186645410	109	121428											
DRD5	1816	broad.mit.edu	37	chr4	9784902	9784902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatccacatgatgcccaacGccgttacccccggcaaccgg	8	18	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9784902	A	A	9784902	3	1	138	1	0	0	0	0	1	0	0	0	4800	1087	38	4	1251	4	DRD5	4	9784902	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	5276036	9784902	181369374	110	121429											
SLIT2	9353	broad.mit.edu	37	chr4	20599867	20599867	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtacacatcctagtaatGccagggttactttctactag	8	10	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20599867	C	C	20599867	1	2	138	0	1	0	0	0	0	0	0	0	14854	1334	46	4		4	SLIT2	4	20599867	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	10814965	20599867	170554409	111	121430											
SLC34A2	10568	broad.mit.edu	37	chr4	25674768	25674768	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgggcaccatcttgctcAtactctccctgctggtcctc	8	16	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25674768	T	T	25674768	3	4	138	1	0	0	0	0	1	0	0	0	14682	217	8	5	1142	5	SLC34A2	4	25674768	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	5074901	25674768	165479508	112	121431											
GABRB1	2560	broad.mit.edu	37	chr4	47408636	47408636	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaaatggcatctgtcctctCaatcttgaaaaaggaactta	7	9	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47408636	A	A	47408636	1	1	138	0	1	0	0	0	0	0	0	0	6226	841	29	3		3	GABRB1	4	47408636	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	21733868	47408636	143745640	113	121432											
CORIN	10699	broad.mit.edu	37	chr4	47628359	47628359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaaaaaatggaagaaagGcccaatgataaactcttgct	8	6	1	2	rs142131590	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47628359	T	T	47628359	1	4	138	0	1	0	0	0	0	0	0	0	3784	1218	42	3		3	CORIN	4	47628359	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	219723	47628359	143525917	114	121433											
NIPAL1	152519	broad.mit.edu	37	chr4	48038210	48038210	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctctagaaacactgagtTttaaccaatatgagacacac	6	9	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48038210	G	G	48038210	1	3	138	0	1	0	0	0	0	0	0	0	10519	1856	64	5		5	NIPAL1	4	48038210	3'UTR	SNP	T	TCGA-49-4505-01A-01D-1265-08	409851	48038210	143116066	115	121434											
CWH43	80157	broad.mit.edu	37	chr4	48993665	48993665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaacctggggccaggaGttccaggttatagtttttac	13	7	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48993665	T	T	48993665	1	4	138	0	1	0	0	0	0	0	0	0	4106	1044	36	3		3	CWH43	4	48993665	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	955455	48993665	142160611	116	121435											
PDGFRA	5156	broad.mit.edu	37	chr4	55156545	55156545	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggcacgcatgcgtgtGgactcagacaatgcatacat	12	10	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55156545	C	C	55156545	2	2	138	1	0	0	0	0	0	0	0	1	11755	1335	47	4		4	PDGFRA	4	55156545	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	6162880	55156545	135997731	117	121436											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68699064	68699064	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctccaaggattctctgctCagacaatgttattaggtctg	9	10	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68699064	G	G	68699064	3	3	138	1	0	0	0	0	1	0	0	0	16364	835	29	4	722	4	TMPRSS11D	4	68699064	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	13542519	68699064	122455212	118	121437											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68964461	68964461	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaacacagagctcaatacaGaagcaaactataatttaaca	5	8	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68964461	T	T	68964461	1	4	138	0	1	0	0	0	0	0	0	0	16366	957	33	3		3	TMPRSS11F	4	68964461	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	265397	68964461	122189815	119	121438											
PTPN13	5783	broad.mit.edu	37	chr4	87730997	87730997	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atacaccttctcaaccagatGatctgcttacttttatctcc	3	13	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87730997	A	A	87730997	3	1	138	1	0	0	0	0	1	0	0	0	12888	1290	45	4	7352	4	PTPN13	4	87730997	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	18766536	87730997	103423279	120	121439											
GRID2	2895	broad.mit.edu	37	chr4	94690314	94690314	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtgttgtgaaccagggCgataactatgtctgtaataa	12	5	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94690314	T	T	94690314	1	4	138	0	1	0	0	0	0	0	0	0	6838	783	27	4		4	GRID2	4	94690314	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	6959317	94690314	96463962	121	121440											
ADH5	128	broad.mit.edu	37	chr4	100003329	100003329	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaattcagaggtacagaTacaagaaaagtcattttatt	7	5	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100003329	C	C	100003329	1	2	138	0	1	0	0	0	0	0	0	0	311	1421	49	5		5	ADH5	4	100003329	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	5313015	100003329	91150947	122	121441											
CXXC4	80319	broad.mit.edu	37	chr4	105412047	105412049	+	In_Frame_Del	DEL	TCT	-	-													gcagaccccacaccttttccTcttcttcttggctgggttgg							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105412049	-	-	105412047	7	5	138	1	0	1	0	1	0	0	0	0	4131	1550	54	0	198	0	CXXC4	4	105412047	In_Frame_Del	DEL	TCT	TCGA-49-4505-01A-01D-1265-08	5408718	105412047	85742229	123	121442											
ENPEP	2028	broad.mit.edu	37	chr4	111480849	111480849	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccgaattgtcacaatagcaGagccattcaacactgaactg	8	11	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111480849	T	T	111480849	4	4	138	1	0	0	0	0	0	1	0	0	5170	943	33	3	2763	3	ENPEP	4	111480849	Nonsense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	6068802	111480849	79673427	124	121443											
ANK2	287	broad.mit.edu	37	chr4	114279055	114279055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaactgaagaggggacccCaacaagtgagcaaaacccat	9	13	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114279055	A	A	114279055	3	1	138	1	0	0	0	0	1	0	0	0	621	594	21	2	9496	2	ANK2	4	114279055	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2798206	114279055	76875221	125	121444											
FAT4	79633	broad.mit.edu	37	chr4	126389833	126389833	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaaccagacaggcgaccgGgctgagtttttggcccttga	13	11	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126389833	C	C	126389833	2	2	138	1	0	0	0	0	0	0	0	1	5749	1219	43	4		4	FAT4	4	126389833	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	12110778	126389833	64764443	126	121445											
C4orf29	80167	broad.mit.edu	37	chr4	128911006	128911006	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttgttcaaaaagatgaaTacattatttatgttcattaa	4	3	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128911006	A	A	128911006	1	1	138	0	1	0	0	0	0	0	0	0	2282	1421	49	5		5	C4orf29	4	128911006	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	2521173	128911006	62243270	127	121446											
UCP1	7350	broad.mit.edu	37	chr4	141489737	141489737	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtcctgagaccccttgtCttacccctctgcctagctac	6	17	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141489737	T	T	141489737	1	4	138	0	1	0	0	0	0	0	0	0	17056	928	32	4		4	UCP1	4	141489737	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	12578731	141489737	49664539	128	121447											
INPP4B	8821	broad.mit.edu	37	chr4	143033741	143033741	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gattccaacattaaaaagtaCtggatacacatgaagcaact	6	8	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143033741	G	G	143033741	3	3	138	1	0	0	0	0	1	0	0	0	7823	565	20	4	564	4	INPP4B	4	143033741	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	1544004	143033741	48120535	129	121448											
TLL1	7092	broad.mit.edu	37	chr4	166916353	166916353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtagaactaggtagggacTgacttaaggaaaaaaaaaat	10	3	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166916353	A	A	166916353	1	1	138	0	1	0	0	0	0	0	0	0	16068	1595	55	5		5	TLL1	4	166916353	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	23882612	166916353	24237923	130	121449											
TLL1	7092	broad.mit.edu	37	chr4	166929311	166929311	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actttcaaatattgctacctCactgcagaaagtagaaaaat	5	8	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166929311	A	A	166929311	1	1	138	0	1	0	0	0	0	0	0	0	16068	841	29	3		3	TLL1	4	166929311	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	12958	166929311	24224965	131	121450											
GALNTL6	442117	broad.mit.edu	37	chr4	173734827	173734827	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaatgtactacaaaagaatCcccatccctccagagctcca	5	14	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173734827	A	A	173734827	2	1	138	1	0	0	0	0	0	0	0	1	6287	845	30	3		3	GALNTL6	4	173734827	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	6805516	173734827	17419449	132	121451											
HAND2	9464	broad.mit.edu	37	chr4	174450016	174450016	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatgtagctggtggccaggCgcagggtcttgattttggag	17	7	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174450016	T	T	174450016	3	4	138	1	0	0	0	0	1	0	0	0	7016	768	27	4	236	4	HAND2	4	174450016	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	715189	174450016	16704260	133	121452											
VEGFC	7424	broad.mit.edu	37	chr4	177605217	177605220	+	Intron	DEL	ACTT	-	-													aggagaacaaacaagaacacActtacgttaaagatcaaggc							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	177605220	-	-	177605217	6	5	138	0	1	1	0	1	0	0	0	0	17279	174	6	0		0	VEGFC	4	177605217	Intron	DEL	ACTT	TCGA-49-4505-01A-01D-1265-08	3155201	177605217	13549059	134	121453											
TUBB4Q	56604	broad.mit.edu	37	chr4	190905590	190905590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggtgggggaaggacggGggtcgcaccgctggcctcgt	22	10	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190905590	T	T	190905590	1	4	138	0	1	0	0	0	0	0	0	0	16885	1247	43	2		2	TUBB4Q	4	190905590	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	13300373	190905590	248686	135	121454											
SEMA5A	9037	broad.mit.edu	37	chr5	9054450	9054450	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttactaaatggaagctaagtGgattctgtttagtaagggaa	11	3	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9054450	C	C	9054450	1	2	138	0	1	0	0	0	0	0	0	0	14150	1363	47	4		4	SEMA5A	5	9054450	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08		9054450	171860810	136	121455											
CTNND2	1501	broad.mit.edu	37	chr5	11732279	11732279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggcgaggatggcagagGtggtttctgtttcagagcca	16	7	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11732279	T	T	11732279	3	4	138	1	0	0	0	0	1	0	0	0	4054	1261	44	3	3618	3	CTNND2	5	11732279	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	2677829	11732279	169182981	137	121456											
DNAH5	1767	broad.mit.edu	37	chr5	13777522	13777522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcatgagagggaaagaaCcttgtaacaacgcattatgc	9	7	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13777522	A	A	13777522	1	1	138	0	1	0	0	0	0	0	0	0	4644	522	18	3		3	DNAH5	5	13777522	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2045243	13777522	167137738	138	121457											
CDH12	1010	broad.mit.edu	37	chr5	21884031	21884031	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgggagggggttttgccctCcttcgatgcattccagcctt	12	11	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21884031	A	A	21884031	1	1	138	0	1	0	0	0	0	0	0	0	3128	870	30	3		3	CDH12	5	21884031	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	8106509	21884031	159031229	139	121458											
CDH9	1007	broad.mit.edu	37	chr5	26890441	26890441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagatcttgctaaggataCaatcataccactcaagaaaa	5	9	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26890441	A	A	26890441	1	1	138	0	1	0	0	0	0	0	0	0	3147	493	17	3		3	CDH9	5	26890441	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	5006410	26890441	154024819	140	121459											
CDH9	1007	broad.mit.edu	37	chr5	26915702	26915702	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgagcaaacaaacaaAtaaaaagtagtttacatgga	6	6	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26915702	T	T	26915702	1	4	138	0	1	0	0	0	0	0	0	0	3147	116	4	5		5	CDH9	5	26915702	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	25261	26915702	153999558	141	121460											
UGT3A1	133688	broad.mit.edu	37	chr5	35954564	35954564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatgacactggctgccaCcactgccgacttgtacctgt	10	14	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35954564	A	A	35954564	3	1	138	1	0	0	0	0	1	0	0	0	17089	507	18	3	263	3	UGT3A1	5	35954564	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	9038862	35954564	144960696	142	121461											
EGFLAM	133584	broad.mit.edu	37	chr5	38350497	38350497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaaacattctctgtgcCaagcagtttcacaggggcct	9	11	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38350497	A	A	38350497	1	1	138	0	1	0	0	0	0	0	0	0	5006	609	21	2		2	EGFLAM	5	38350497	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2395933	38350497	142564763	143	121462											
HEATR7B2	133558	broad.mit.edu	37	chr5	41018431	41018431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaagtctattcattctagGggattacttacctcaatatc	5	8	4	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41018431	T	T	41018431	1	4	138	0	1	0	0	0	0	0	0	0	7102	1247	43	2		2	HEATR7B2	5	41018431	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	2667934	41018431	139896829	144	121463											
HEATR7B2	133558	broad.mit.edu	37	chr5	41038956	41038956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagatgaccatgacatctGtcttggtcaggctctttttc	8	10	4	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41038956	T	T	41038956	3	4	138	1	0	0	0	0	1	0	0	0	7102	1377	48	3	2749	3	HEATR7B2	5	41038956	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	20525	41038956	139876304	145	121464											
OXCT1	5019	broad.mit.edu	37	chr5	41861667	41861667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagctaagtaaatggtcaTatagctgtatccaaatgttt	8	6	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41861667	C	C	41861667	1	2	138	0	1	0	0	0	0	0	0	0	11423	1421	49	5		5	OXCT1	5	41861667	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	822711	41861667	139053593	146	121465											
HCN1	348980	broad.mit.edu	37	chr5	45262097	45262097	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggaagattctcttggaaGagcagctgctggtggagggg	18	5	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45262097	T	T	45262097	3	4	138	1	0	0	0	0	1	0	0	0	7062	942	33	3	77	3	HCN1	5	45262097	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	3400430	45262097	135653163	147	121466											
DEPDC1B	55789	broad.mit.edu	37	chr5	59982767	59982767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccaattcctcaccttcCaggtttacatgttgccatta	4	15	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59982767	A	A	59982767	1	1	138	0	1	0	0	0	0	0	0	0	4480	609	21	2		2	DEPDC1B	5	59982767	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	14720670	59982767	120932493	148	121467											
SV2C	22987	broad.mit.edu	37	chr5	75596736	75596736	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctctgctgatggacagaAttgggcgcttaacaatgcta	11	9	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75596736	G	G	75596736	3	3	138	1	0	0	0	0	1	0	0	0	15537	101	4	5	1857	5	SV2C	5	75596736	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	15613969	75596736	105318524	149	121468											
IQGAP2	10788	broad.mit.edu	37	chr5	75893132	75893132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcaaagccttacctaccCtctgcctgcagcttttcaga	5	14	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75893132	A	A	75893132	1	1	138	0	1	0	0	0	0	0	0	0	7885	696	24	2		2	IQGAP2	5	75893132	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	296396	75893132	105022128	150	121469											
THBS4	7060	broad.mit.edu	37	chr5	79351687	79351687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggcagacggaaggcgGcacaggatcctcctgaggct	15	12	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79351687	T	T	79351687	2	4	138	1	0	0	0	0	0	0	0	1	15979	1190	42	3		3	THBS4	5	79351687	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	3458555	79351687	101563573	151	121470											
CHD1	1105	broad.mit.edu	37	chr5	98195662	98195662	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaattcagggaaaaaatatGatgtcaagtttacctgagac	8	5	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98195662	A	A	98195662	1	1	138	0	1	0	0	0	0	0	0	0	3354	1305	45	4		4	CHD1	5	98195662	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	18843975	98195662	82719598	152	121471											
ACSL6	23305	broad.mit.edu	37	chr5	131324307	131324307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagccctgtggaaggaacCttcgtgtgaagtctgaccag	13	10	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131324307	A	A	131324307	1	1	138	0	1	0	0	0	0	0	0	0	181	696	24	2		2	ACSL6	5	131324307	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	33128645	131324307	49590953	153	121472											
AFF4	27125	broad.mit.edu	37	chr5	132278647	132278647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgatgggaaaggggtcCttcaagtacacctgggtctt	13	8	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132278647	A	A	132278647	1	1	138	0	1	0	0	0	0	0	0	0	359	696	24	2		2	AFF4	5	132278647	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	954340	132278647	48636613	154	121473											
H2AFY	9555	broad.mit.edu	37	chr5	134705393	134705393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttgctttgggttggtgCagctccttcctccatggcat	11	11	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134705393	A	A	134705393	1	1	138	0	1	0	0	0	0	0	0	0	6994	725	25	3		3	H2AFY	5	134705393	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2426746	134705393	46209867	155	121474											
PCDHB8	56128	broad.mit.edu	37	chr5	140559207	140559207	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaggcgttcgagttccGggtgggcgcttcagaccgcg	16	13	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559207	A	A	140559207	3	1	138	1	0	0	0	0	1	0	0	0	11642	1116	39	4	1594	4	PCDHB8	5	140559207	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	5853814	140559207	40356053	156	121475											
FBXO38	81545	broad.mit.edu	37	chr5	147813274	147813274	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagatctagtgctaaaagActgtccaaagatgatgttca	8	8	2	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147813274	T	T	147813274	3	4	138	1	0	0	0	0	1	0	0	0	5803	275	10	5	2893	5	FBXO38	5	147813274	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	7254067	147813274	33101986	157	121476											
LARP1	23367	broad.mit.edu	37	chr5	154169891	154169891	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttgttcccacagaacactCtgctccagccaaggtggtga	9	13	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154169891	T	T	154169891	3	4	138	1	0	0	0	0	1	0	0	0	8700	913	32	4	218	4	LARP1	5	154169891	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	6356617	154169891	26745369	158	121477											
RNF145	153830	broad.mit.edu	37	chr5	158595962	158595962	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatagaagctacgacaatgAaaaggataatactgagcaag	11	5	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158595962	C	C	158595962	3	2	138	1	0	0	0	0	1	0	0	0	13558	246	9	5	967	5	RNF145	5	158595962	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	4426071	158595962	22319298	159	121478											
GABRG2	2566	broad.mit.edu	37	chr5	161578664	161578664	+	Intron	DEL	T	-	-													taatttatcttgtctctctcTttttttttcattttttttct							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	161578664	-	-	161578664	6	5	138	0	1	1	0	1	0	0	0	0	6232	1624	56	0		0	GABRG2	5	161578664	Intron	DEL	T	TCGA-49-4505-01A-01D-1265-08	2982702	161578664	19336596	160	121479											
SLIT3	6586	broad.mit.edu	37	chr5	168135055	168135055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccgttattcttgcacgGgctggagaggcaggcattgc	14	10	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168135055	T	T	168135055	3	4	138	1	0	0	0	0	1	0	0	0	14855	1232	43	2	1845	2	SLIT3	5	168135055	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	6556391	168135055	12780205	161	121480											
HK3	3101	broad.mit.edu	37	chr5	176314386	176314386	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatagggcttgtggctccaGccccagcacacactgggacc	13	14	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176314386	A	A	176314386	1	1	138	0	1	0	0	0	0	0	0	0	7259	986	34	4		4	HK3	5	176314386	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	8179331	176314386	4600874	162	121481											
RUFY1	80230	broad.mit.edu	37	chr5	179008121	179008121	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataacttgtttccaaaccAagacaaaagggtcatcattc	5	9	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179008121	C	C	179008121	1	2	138	0	1	0	0	0	0	0	0	0	13849	145	5	5		5	RUFY1	5	179008121	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	2693735	179008121	1907139	163	121482											
GFPT2	9945	broad.mit.edu	37	chr5	179734239	179734239	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaccagcagcgatctctgCgtgtagagctccagggccaa	11	13	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179734239	A	A	179734239	2	1	138	1	0	0	0	0	0	0	0	1	6410	755	27	3		3	GFPT2	5	179734239	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	726118	179734239	1181021	164	121483											
CNOT6	57472	broad.mit.edu	37	chr5	179976929	179976929	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtatttttttctcttacAggaaaagtaagaagcttaag	7	6	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179976929	G	G	179976929	5	3	138	1	0	0	0	0	0	0	1	0	3654	202	7	5	117	5	CNOT6	5	179976929	Splice_Site	SNP	A	TCGA-49-4505-01A-01D-1265-08	242690	179976929	938331	165	121484											
OR2Y1	134083	broad.mit.edu	37	chr5	180167004	180167004	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggctccagttgcggccaatCtgagaatcccaccaaaatga	10	12	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180167004	G	G	180167004	3	3	138	1	0	0	0	0	1	0	0	0	11129	913	32	4	884	4	OR2Y1	5	180167004	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	190075	180167004	748256	166	121485											
FOXF2	2295	broad.mit.edu	37	chr6	1394885	1394885	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacaccctgccatccactGgatgactttgtttctgaaga	8	11	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1394885	A	A	1394885	1	1	138	0	1	0	0	0	0	0	0	0	6066	1363	47	4		4	FOXF2	6	1394885	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08		1394885	169720182	167	121486											
RIOK1	83732	broad.mit.edu	37	chr6	7411714	7411714	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtttgtatatagcaagcAgctcttcaaaagtagtaggg	11	5	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7411714	T	T	7411714	1	4	138	0	1	0	0	0	0	0	0	0	13488	203	7	5		5	RIOK1	6	7411714	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	6016829	7411714	163703353	168	121487											
NUP153	9972	broad.mit.edu	37	chr6	17624952	17624952	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatatagatccaaagcctggGggattgggctggctggcacc	15	9	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17624952	A	A	17624952	2	1	138	1	0	0	0	0	0	0	0	1	10850	1219	43	4		4	NUP153	6	17624952	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	10213238	17624952	153490115	169	121488											
HIST1H1E	3008	broad.mit.edu	37	chr6	26156797	26156797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcagcggcgtatctttggCcgctctcaagaaagcgctgg	14	12	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26156797	A	A	26156797	3	1	138	1	0	0	0	0	1	0	0	0	7193	739	26	3	181	3	HIST1H1E	6	26156797	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	8531845	26156797	144958270	170	121489											
BTN1A1	696	broad.mit.edu	37	chr6	26509306	26509306	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggacctttctaaggagatCccattgtcccccatggggga	11	12	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26509306	A	A	26509306	2	1	138	1	0	0	0	0	0	0	0	1	1569	845	30	3		3	BTN1A1	6	26509306	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	352509	26509306	144605761	171	121490											
GNL1	2794	broad.mit.edu	37	chr6	30514418	30514418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctggccacaaagcccaCacccttttacctacgctata	4	17	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30514418	A	A	30514418	1	1	138	0	1	0	0	0	0	0	0	0	6599	493	17	3		3	GNL1	6	30514418	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	4005112	30514418	140600649	172	121491											
CCHCR1	54535	broad.mit.edu	37	chr6	31113225	31113225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagtgcccaaacttcacCtctcctggcgcagctgagca	8	15	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31113225	A	A	31113225	3	1	138	1	0	0	0	0	1	0	0	0	2905	695	24	2	904	2	CCHCR1	6	31113225	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	598807	31113225	140001842	173	121492											
LSM2	57819	broad.mit.edu	37	chr6	31765615	31765615	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctgctggcagctgcacGtatcggaccactgagccccg	11	15	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31765615	A	A	31765615	2	1	138	1	0	0	0	0	0	0	0	1	9143	1140	40	4		4	LSM2	6	31765615	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	652390	31765615	139349452	174	121493											
COL11A2	1302	broad.mit.edu	37	chr6	33137350	33137350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttccgagacaccttcagCcatcccctactcccctcagt	5	19	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33137350	A	A	33137350	1	1	138	0	1	0	0	0	0	0	0	0	3700	754	26	3		3	COL11A2	6	33137350	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1371735	33137350	137977717	175	121494											
IP6K3	117283	broad.mit.edu	37	chr6	33696019	33696019	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctggctctccttcactggGttggcaaccaagctgagatg	11	12	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33696019	C	C	33696019	3	2	138	1	0	0	0	0	1	0	0	0	7860	1252	44	4	990	4	IP6K3	6	33696019	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	558669	33696019	137419048	176	121495											
TEAD3	7005	broad.mit.edu	37	chr6	35443917	35443917	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagtactcaggcttgcagGcccgggggcggggaagggag	21	8	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35443917	T	T	35443917	1	4	138	0	1	0	0	0	0	0	0	0	15862	1218	42	3		3	TEAD3	6	35443917	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1747898	35443917	135671150	177	121496											
SLC35B2	347734	broad.mit.edu	37	chr6	44222605	44222605	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagagaaggcaggaaagaagGatggcaaaggcctggcggag	18	5	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44222605	A	A	44222605	2	1	138	1	0	0	0	0	0	0	0	1	14690	1164	41	4		4	SLC35B2	6	44222605	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	8778688	44222605	126892462	178	121497											
CRISP1	167	broad.mit.edu	37	chr6	49802968	49802968	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaactatagcaaaagacatGaatccaacagacatctcctc	5	11	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49802968	T	T	49802968	1	4	138	0	1	0	0	0	0	0	0	0	3911	1305	45	3		3	CRISP1	6	49802968	3'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	5580363	49802968	121312099	179	121498											
IL17A	3605	broad.mit.edu	37	chr6	52052599	52052599	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatccacctcaccttggaatCtccagtacgtaaagcttcca	6	14	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52052599	T	T	52052599	3	4	138	1	0	0	0	0	1	0	0	0	7704	913	32	4	232	4	IL17A	6	52052599	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2249631	52052599	119062468	180	121499											
ELOVL5	60481	broad.mit.edu	37	chr6	53133888	53133888	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actcatattgtgcttacaatCagatgacgtggtttggaggg	12	6	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53133888	T	T	53133888	1	4	138	0	1	0	0	0	0	0	0	0	5119	841	29	4		4	ELOVL5	6	53133888	3'UTR	SNP	C	TCGA-49-4505-01A-01D-1265-08	1081289	53133888	117981179	181	121500											
COL9A1	1297	broad.mit.edu	37	chr6	70963287	70963287	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagttcccaaattctgcacAgtcatttatagaattaccca	4	11	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70963287	T	T	70963287	1	4	138	0	1	0	0	0	0	0	0	0	3739	203	7	5		5	COL9A1	6	70963287	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	17829399	70963287	100151780	182	121501											
COL9A1	1297	broad.mit.edu	37	chr6	71004337	71004337	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtatttaccacattccctTttgaggccattttagatgcc	6	10	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71004337	A	A	71004337	1	1	138	0	1	0	0	0	0	0	0	0	3739	1856	64	5		5	COL9A1	6	71004337	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	41050	71004337	100110730	183	121502											
CD109	135228	broad.mit.edu	37	chr6	74521813	74521813	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacagtgcaaagctcttagTgctgtcagtgattgcttctt	10	8	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74521813	A	A	74521813	1	1	138	0	1	0	0	0	0	0	0	0	2993	1711	59	5		5	CD109	6	74521813	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	3517476	74521813	96593254	184	121503											
TBX18	9096	broad.mit.edu	37	chr6	85453960	85453960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttatcataaccggaatGgtcttcactaaggcccacct	6	11	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85453960	T	T	85453960	1	4	138	0	1	0	0	0	0	0	0	0	15775	1363	47	2		2	TBX18	6	85453960	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	10932147	85453960	85661107	185	121504											
MDN1	23195	broad.mit.edu	37	chr6	90504317	90504317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaaccaaggtgtcatggCttctgaggagagggacacac	14	9	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90504317	A	A	90504317	3	1	138	1	0	0	0	0	1	0	0	0	9508	797	28	3	16657	3	MDN1	6	90504317	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	5050357	90504317	80610750	186	121505											
EPHA7	2045	broad.mit.edu	37	chr6	93967241	93967241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactatcatgactggtttcCctaaaattaaaaaaaaaaag	4	6	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93967241	A	A	93967241	3	1	138	1	0	0	0	0	1	0	0	0	5214	637	22	2	909	2	EPHA7	6	93967241	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	3462924	93967241	77147826	187	121506											
ENPP1	5167	broad.mit.edu	37	chr6	132194317	132194317	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattctcttcactctaaccCaggatttctaatgtcggcct	6	12	4	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132194317	T	T	132194317	1	4	138	0	1	0	0	0	0	0	0	0	5171	609	21	4		4	ENPP1	6	132194317	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	38227076	132194317	38920750	188	121507											
TAAR2	9287	broad.mit.edu	37	chr6	132938904	132938904	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtggaataaagtaatggGtaacatatagcataaaatct	9	3	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132938904	T	T	132938904	4	4	138	1	0	0	0	0	0	1	0	0	15609	1256	44	3	618	3	TAAR2	6	132938904	Nonsense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	744587	132938904	38176163	189	121508											
PDE7B	27115	broad.mit.edu	37	chr6	136476907	136476907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatatcaggtaagggagcCcaacctggagccagccacag	11	13	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136476907	A	A	136476907	1	1	138	0	1	0	0	0	0	0	0	0	11746	638	22	2		2	PDE7B	6	136476907	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	3538003	136476907	34638160	190	121509											
FNDC1	84624	broad.mit.edu	37	chr6	159646637	159646637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataagcagatcgctaacaggCgtgtgctgattgagaacctg	12	8	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159646637	T	T	159646637	3	4	138	1	0	0	0	0	1	0	0	0	6026	768	27	4	985	4	FNDC1	6	159646637	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	23169730	159646637	11468430	191	121510											
PDE10A	10846	broad.mit.edu	37	chr6	165863929	165863929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttagtctgtaagacatacTattaatatatgtgacttaat	5	6	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165863929	A	A	165863929	1	1	138	0	1	0	0	0	0	0	0	0	11724	1537	53	5		5	PDE10A	6	165863929	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	6217292	165863929	5251138	192	121511											
MICALL2	79778	broad.mit.edu	37	chr7	1498777	1498777	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccgcccgtgtcagcgcgcAgccgaacagcagaagaatca	11	16	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1498777	T	T	1498777	1	4	138	0	1	0	0	0	0	0	0	0	9667	203	7	5		5	MICALL2	7	1498777	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08		1498777	157639886	193	121512											
INTS1	26173	broad.mit.edu	37	chr7	1535817	1535817	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttctcctttgtcccaggcGatgccggcctccttcacctg	8	16	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1535817	A	A	1535817	2	1	138	1	0	0	0	0	0	0	0	1	7845	1048	37	4		4	INTS1	7	1535817	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	37040	1535817	157602846	194	121513											
MAD1L1	8379	broad.mit.edu	37	chr7	2255962	2255962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagaagggaaaaatgagCcacgaagagacctggagaaa	14	5	0	5			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2255962	A	A	2255962	1	1	138	0	1	0	0	0	0	0	0	0	9235	754	26	3		3	MAD1L1	7	2255962	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	720145	2255962	156882701	195	121514											
SDK1	221935	broad.mit.edu	37	chr7	4285245	4285245	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggccaaatgccaggttagGagtcctccggggaagggcgt	16	9	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4285245	T	T	4285245	1	4	138	0	1	0	0	0	0	0	0	0	14081	1189	41	3		3	SDK1	7	4285245	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	2029283	4285245	154853418	196	121515											
ITGB8	3696	broad.mit.edu	37	chr7	20449248	20449248	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattacagaatgtttctcCagcccaagctacttgagaat	6	10	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20449248	A	A	20449248	2	1	138	1	0	0	0	0	0	0	0	1	7971	581	21	2		2	ITGB8	7	20449248	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	16164003	20449248	138689415	197	121516											
STK31	56164	broad.mit.edu	37	chr7	23809344	23809344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagagaagactgagtcaaGtgtctgcaaagagctggaga	13	7	2	5			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23809344	T	T	23809344	3	4	138	1	0	0	0	0	1	0	0	0	15414	1029	36	3	1732	3	STK31	7	23809344	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	3360096	23809344	135329319	198	121517											
CAMK2B	816	broad.mit.edu	37	chr7	44323680	44323680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggcacggcctccaaagCccctgccccagcctgacagc	10	19	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44323680	A	A	44323680	1	1	138	0	1	0	0	0	0	0	0	0	2626	754	26	3		3	CAMK2B	7	44323680	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	20514336	44323680	114814983	199	121518											
HGF	3082	broad.mit.edu	37	chr7	81374216	81374216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttatgttcatgtcctatcGggaaaacataatataaagag	8	5	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81374216	T	T	81374216	1	4	138	0	1	0	0	0	0	0	0	0	7152	1131	39	1		1	HGF	7	81374216	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	37050536	81374216	77764447	200	121519											
CACNA2D1	781	broad.mit.edu	37	chr7	81641517	81641517	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggacttgcttagctttgtCtcctgctaaaaccattggtc	8	10	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81641517	T	T	81641517	3	4	138	1	0	0	0	0	1	0	0	0	2574	913	32	4	2060	4	CACNA2D1	7	81641517	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	267301	81641517	77497146	201	121520											
PCLO	27445	broad.mit.edu	37	chr7	82579564	82579564	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcatcttcgtcatccGtttgtacaccactgtccact	7	14	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82579564	A	A	82579564	3	1	138	1	0	0	0	0	1	0	0	0	11677	1145	40	4	5185	4	PCLO	7	82579564	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	938047	82579564	76559099	202	121521											
ANKIB1	54467	broad.mit.edu	37	chr7	92021770	92021770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacatttagctatttatgtGgtattgctatatcgtcacat	6	7	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92021770	T	T	92021770	1	4	138	0	1	0	0	0	0	0	0	0	630	1363	47	2		2	ANKIB1	7	92021770	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	9442206	92021770	67116893	203	121522											
MUC17	140453	broad.mit.edu	37	chr7	100675218	100675218	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcttcccagttttgaggCctacacatctttaacatata	4	12	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100675218	T	T	100675218	3	4	138	1	0	0	0	0	1	0	0	0	10068	739	26	4	531	4	MUC17	7	100675218	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	8653448	100675218	58463445	204	121523											
LHFPL3	375612	broad.mit.edu	37	chr7	104308763	104308763	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttttggccgtgatagaaatCgggattctgacaaaacagat	10	7	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104308763	A	A	104308763	1	1	138	0	1	0	0	0	0	0	0	0	8838	899	31	3		3	LHFPL3	7	104308763	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	3633545	104308763	54829900	205	121524											
MLL5	55904	broad.mit.edu	37	chr7	104681552	104681552	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaggaagaagtataagtggAaaatattaaatttcttcttt	8	2	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104681552	G	G	104681552	1	3	138	0	1	0	0	0	0	0	0	0	9717	261	9	5		5	MLL5	7	104681552	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	372789	104681552	54457111	206	121525											
RBM28	55131	broad.mit.edu	37	chr7	127957592	127957592	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttagggaactgggagtaaaGggaactaggagcaaaaaaac	13	5	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127957592	C	C	127957592	1	2	138	0	1	0	0	0	0	0	0	0	13236	1015	35	4		4	RBM28	7	127957592	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	23276040	127957592	31181071	207	121526											
FLNC	2318	broad.mit.edu	37	chr7	128486554	128486554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagcctaaatctgtgaccaCcctttcccagcccctggccc	6	19	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128486554	A	A	128486554	1	1	138	0	1	0	0	0	0	0	0	0	5993	522	18	3		3	FLNC	7	128486554	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	528962	128486554	30652109	208	121527											
PLXNA4	91584	broad.mit.edu	37	chr7	131913287	131913287	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcttggtccagggaggggcGgatgctgaggtcaggtgttt	19	7	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131913287	C	C	131913287	1	2	138	0	1	0	0	0	0	0	0	0	12217	1131	39	4		4	PLXNA4	7	131913287	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	3426733	131913287	27225376	209	121528											
MGAM	8972	broad.mit.edu	37	chr7	141718969	141718969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatgttctacaactaaatGgagcttctttgactaacctc	5	10	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141718969	T	T	141718969	1	4	138	0	1	0	0	0	0	0	0	0	9634	1363	47	2		2	MGAM	7	141718969	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	9805682	141718969	17419694	210	121529											
EPHB6	2051	broad.mit.edu	37	chr7	142562293	142562293	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcttcctttccagagacGcaggccagtggggctggggg	16	10	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142562293	T	T	142562293	2	4	138	1	0	0	0	0	0	0	0	1	5220	1074	38	3		3	EPHB6	7	142562293	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	843324	142562293	16576370	211	121530											
TAS2R60	338398	broad.mit.edu	37	chr7	143140889	143140889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtcctctacctggctcaGtgtcttctattgtgtgaaaa	9	9	4	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143140889	T	T	143140889	3	4	138	1	0	0	0	0	1	0	0	0	15704	1029	36	3	346	3	TAS2R60	7	143140889	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	578596	143140889	15997774	212	121531											
CUL1	8454	broad.mit.edu	37	chr7	148463701	148463701	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagagttcaggtttaccttCatgaaagcacacaagatgaa	9	7	2	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148463701	T	T	148463701	3	4	138	1	0	0	0	0	1	0	0	0	4087	826	29	4	864	4	CUL1	7	148463701	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	5322812	148463701	10674962	213	121532											
SSPO	23145	broad.mit.edu	37	chr7	149522263	149522263	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgggacaggaacatctgaGaccaaacctgaggggagagt	14	9	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149522263	T	T	149522263	1	4	138	0	1	0	0	0	0	0	0	0	15307	957	33	3		3	SSPO	7	149522263	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1058562	149522263	9616400	214	121533											
PRKAG2	51422	broad.mit.edu	37	chr7	151478496	151478496	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccctttggaggggctgcCcgggccgaaggggctgtcca	17	12	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151478496	A	A	151478496	3	1	138	1	0	0	0	0	1	0	0	0	12607	623	22	2	1557	2	PRKAG2	7	151478496	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	1956233	151478496	7660167	215	121534											
DPP6	1804	broad.mit.edu	37	chr7	154263946	154263946	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaatcattaagagccatcaGatatgaaatatctccagata	7	7	3	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154263946	T	T	154263946	3	4	138	1	0	0	0	0	1	0	0	0	4770	942	33	3	706	3	DPP6	7	154263946	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	2785450	154263946	4874717	216	121535											
DEFA6	1671	broad.mit.edu	37	chr8	6782358	6782358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagaggcagcagaatctGtggttaatacccatgacagt	10	10	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6782358	T	T	6782358	3	4	138	1	0	0	0	0	1	0	0	0	4426	1368	48	3	21	3	DEFA6	8	6782358	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08		6782358	139581664	217	121536											
PPP3CC	5533	broad.mit.edu	37	chr8	22396941	22396941	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtttactcactctttttcTgtcttcgtttttgcatgcta	6	9	4	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22396941	A	A	22396941	1	1	138	0	1	0	0	0	0	0	0	0	12500	1595	55	5		5	PPP3CC	8	22396941	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	15614583	22396941	123967081	218	121537											
ANK1	286	broad.mit.edu	37	chr8	41555497	41555497	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgtacaggccacccctcaaCaatcactgtcccagggtttt	7	15	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41555497	G	G	41555497	1	3	138	0	1	0	0	0	0	0	0	0	620	493	17	4		4	ANK1	8	41555497	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	19158556	41555497	104808525	219	121538											
SNTG1	54212	broad.mit.edu	37	chr8	51314846	51314846	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcacctagccaaagacaTtttgatgatccaggaacagg	10	10	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51314846	A	A	51314846	3	1	138	1	0	0	0	0	1	0	0	0	14988	1493	52	5	110	5	SNTG1	8	51314846	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	9759349	51314846	95049176	220	121539											
PXDNL	137902	broad.mit.edu	37	chr8	52384748	52384748	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccatgctcagtatttactTgttgtgtatccaaataatct	6	8	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52384748	A	A	52384748	3	1	138	1	0	0	0	0	1	0	0	0	12956	1826	63	5	3644	5	PXDNL	8	52384748	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	1069902	52384748	93979274	221	121540											
ST18	9705	broad.mit.edu	37	chr8	53045576	53045576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccctcccattttaccaaCaagagacagctgacccccat	5	16	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53045576	A	A	53045576	1	1	138	0	1	0	0	0	0	0	0	0	15330	493	17	3		3	ST18	8	53045576	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	660828	53045576	93318446	222	121541											
PRDM14	63978	broad.mit.edu	37	chr8	70964340	70964340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcatgaaacttcatgtggGagtagaatgtttcttgatct	9	6	4	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70964340	T	T	70964340	3	4	138	1	0	0	0	0	1	0	0	0	12561	1174	41	3	31	3	PRDM14	8	70964340	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	17918764	70964340	75399682	223	121542											
MSC	9242	broad.mit.edu	37	chr8	72755870	72755870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccgaatccttgcgcgccGcgcccctaccaggttcactg	9	19	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72755870	T	T	72755870	1	4	138	0	1	0	0	0	0	0	0	0	9962	1102	38	3		3	MSC	8	72755870	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1791530	72755870	73608152	224	121543											
ZFHX4	79776	broad.mit.edu	37	chr8	77764127	77764127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattccatgagtttagcagCtgtaaacagcaaagataccc	8	9	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764127	A	A	77764127	3	1	138	1	0	0	0	0	1	0	0	0	17761	797	28	3	5004	3	ZFHX4	8	77764127	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	5008257	77764127	68599895	225	121544											
NECAB1	64168	broad.mit.edu	37	chr8	91940423	91940423	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtctaaagtttaacataTtgccctcatgattccccctg	5	12	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91940423	A	A	91940423	1	1	138	0	1	0	0	0	0	0	0	0	10399	1508	52	5		5	NECAB1	8	91940423	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	14176296	91940423	54423599	226	121545											
RUNX1T1	862	broad.mit.edu	37	chr8	92972678	92972678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtgctggcaaaatgagCcacagtatcgggctgtgtta	12	8	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92972678	A	A	92972678	3	1	138	1	0	0	0	0	1	0	0	0	13858	739	26	3	211	3	RUNX1T1	8	92972678	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	1032255	92972678	53391344	227	121546											
DCAF13	25879	broad.mit.edu	37	chr8	104442727	104442727	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattgtaccctcttaaaatgGactttgttttttaacataaa	4	6	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104442727	T	T	104442727	1	4	138	0	1	0	0	0	0	0	0	0	4299	1189	41	3		3	DCAF13	8	104442727	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	11470049	104442727	41921295	228	121547											
ZFPM2	23414	broad.mit.edu	37	chr8	106810978	106810978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcccttgcaagtcctgtGgcatctggtatcggagtgag	12	9	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106810978	T	T	106810978	3	4	138	1	0	0	0	0	1	0	0	0	17784	1348	47	2	792	2	ZFPM2	8	106810978	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	2368251	106810978	39553044	229	121548											
CSMD3	114788	broad.mit.edu	37	chr8	114111054	114111054	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccatttgaaaatcagtaAatatgagtgaaattgtgtcc	7	6	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114111054	C	C	114111054	3	2	138	1	0	0	0	0	1	0	0	0	3980	14	1	5	10543	5	CSMD3	8	114111054	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	7300076	114111054	32252968	230	121549											
EXT1	2131	broad.mit.edu	37	chr8	118816780	118816780	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaagatactcttaacttgTgtcttcctaattatccctgc	4	10	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118816780	C	C	118816780	1	2	138	0	1	0	0	0	0	0	0	0	5366	1711	59	5		5	EXT1	8	118816780	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	4705726	118816780	27547242	231	121550											
FAM91A1	157769	broad.mit.edu	37	chr8	124810464	124810464	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaaatccggcctgtcagcAgctgcacccctcaggtaaag	10	13	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124810464	T	T	124810464	3	4	138	1	0	0	0	0	1	0	0	0	5708	188	7	5	1608	5	FAM91A1	8	124810464	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	5993684	124810464	21553558	232	121551											
FAM135B	51059	broad.mit.edu	37	chr8	139380184	139380184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccacattataaaatttatGtagctctaccgaaaactcaa	3	9	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139380184	T	T	139380184	3	4	138	1	0	0	0	0	1	0	0	0	5495	1377	48	3	4253	3	FAM135B	8	139380184	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	14569720	139380184	6983838	233	121552											
FLJ43860	389690	broad.mit.edu	37	chr8	142451831	142451831	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaaagtcatgccagtgCcccgtggtggacagcaggct	15	11	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142451831	A	A	142451831	2	1	138	1	0	0	0	0	0	0	0	1	5987	726	26	3		3	FLJ43860	8	142451831	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	3071647	142451831	3912191	234	121553											
PLEC	5339	broad.mit.edu	37	chr8	144993918	144993918	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctccaggtagatgccggcGaggcagccactgccctgcag	13	15	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144993918	A	A	144993918	2	1	138	1	0	0	0	0	0	0	0	1	12147	1045	37	4		4	PLEC	8	144993918	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	2542087	144993918	1370104	235	121554											
MPDZ	8777	broad.mit.edu	37	chr9	13112010	13112010	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagggcttctagggttgaTagtacgactcactctgagtt	12	8	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13112010	C	C	13112010	1	2	138	0	1	0	0	0	0	0	0	0	9816	1421	49	5		5	MPDZ	9	13112010	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08		13112010	128101421	236	121555											
IFNA8	3445	broad.mit.edu	37	chr9	21409376	21409376	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccccaggaggagtttgaTgataaacagttccagaaggc	11	9	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21409376	C	C	21409376	2	2	138	1	0	0	0	0	0	0	0	1	7613	1461	51	5		5	IFNA8	9	21409376	Silent	SNP	T	TCGA-49-4505-01A-01D-1265-08	8297366	21409376	119804055	237	121556											
CDKN2A	1029	broad.mit.edu	37	chr9	21971140	21971140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgagagtggcggggtcgGcgcagttgggctccgcgccg	22	10	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21971140	T	T	21971140	3	4	138	1	0	0	0	0	1	0	0	0	3191	1203	42	3	260	3	CDKN2A	9	21971140	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	561764	21971140	119242291	238	121557											
NFX1	4799	broad.mit.edu	37	chr9	33290743	33290743	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaagggccaagccccgcgCatcgtgcgtacgaagatctg	14	13	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33290743	T	T	33290743	1	4	138	0	1	0	0	0	0	0	0	0	10482	725	25	4		4	NFX1	9	33290743	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	11319603	33290743	107922688	239	121558											
TLN1	7094	broad.mit.edu	37	chr9	35707111	35707112	+	Frame_Shift_Ins	INS	-	G	G													gatggagtctgagacagtacINSgggagtggccggccagcacc							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35707112	G	G	35707111	7	5	138	1	0	1	1	0	0	0	0	0	16070	536	19	0	2796	0	TLN1	9	35707111	Frame_Shift_Ins	INS	-	TCGA-49-4505-01A-01D-1265-08	2416368	35707111	105506320	240	121559											
DCAF10	79269	broad.mit.edu	37	chr9	37836342	37836342	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaacagttaccagaacacatCaaggagccaatctgggaaac	9	10	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37836342	T	T	37836342	1	4	138	0	1	0	0	0	0	0	0	0	4294	841	29	4		4	DCAF10	9	37836342	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2129231	37836342	103377089	241	121560											
ALDH1B1	219	broad.mit.edu	37	chr9	38395944	38395945	+	Missense_Mutation	DNP	CA	TT	TT													ccaccggggaggtcattgggCacgtggctgaaggtgaccgg							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38395945	TT	TT	38395944	3	4	138	1	0	0	0	0	1	0	0	0	493	710	25	4	201	4	ALDH1B1	9	38395944	Missense_Mutation	DNP	CA	TCGA-49-4505-01A-01D-1265-08	559602	38395944	102817487	242	121561											
CNTNAP3	79937	broad.mit.edu	37	chr9	39073772	39073772	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaccctgatggcaacagcAgggaagtccacagtcacgat	11	12	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39073772	G	G	39073772	1	3	138	0	1	0	0	0	0	0	0	0	3680	203	7	5		5	CNTNAP3	9	39073772	3'UTR	SNP	A	TCGA-49-4505-01A-01D-1265-08	677828	39073772	102139659	243	121562											
TRPM6	140803	broad.mit.edu	37	chr9	77377632	77377632	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actactttgtgtttcttgccTttcctggtcatttcttacat	5	10	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377632	A	A	77377632	3	1	138	1	0	0	0	0	1	0	0	0	16715	1608	56	5	2169	5	TRPM6	9	77377632	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	38303860	77377632	63835799	244	121563											
PRUNE2	158471	broad.mit.edu	37	chr9	79461573	79461573	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgactttgacaactgcTgattctaaagttttgtcttc	6	7	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79461573	C	C	79461573	2	2	138	1	0	0	0	0	0	0	0	1	12747	1567	55	5		5	PRUNE2	9	79461573	Silent	SNP	T	TCGA-49-4505-01A-01D-1265-08	2083941	79461573	61751858	245	121564											
PRUNE2	158471	broad.mit.edu	37	chr9	79461594	79461594	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattctaaagttttgtcttcActgtaaagcaaatggagggg	11	5	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79461594	G	G	79461594	2	3	138	1	0	0	0	0	0	0	0	1	12747	173	6	5		5	PRUNE2	9	79461594	Silent	SNP	A	TCGA-49-4505-01A-01D-1265-08	21	79461594	61751837	246	121565											
FGD3	89846	broad.mit.edu	37	chr9	95773546	95773546	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accactccaatgctgccattCggaaagtggtgagtgtgggg	14	9	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95773546	T	T	95773546	3	4	138	1	0	0	0	0	1	0	0	0	5891	875	31	4	1049	4	FGD3	9	95773546	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	16311952	95773546	45439885	247	121566											
C9orf3	84909	broad.mit.edu	37	chr9	97562853	97562853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattcaaacacatgaatacGtttttgtcctgtaaattttc	5	7	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97562853	T	T	97562853	1	4	138	0	1	0	0	0	0	0	0	0	2503	1160	40	3		3	C9orf3	9	97562853	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1789307	97562853	43650578	248	121567											
SVEP1	79987	broad.mit.edu	37	chr9	113194879	113194879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcatcggctgaatggaagCcattctccaaaggaggtggc	13	9	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113194879	A	A	113194879	3	1	138	1	0	0	0	0	1	0	0	0	15538	739	26	3	5691	3	SVEP1	9	113194879	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	15632026	113194879	28018552	249	121568											
ASTN2	23245	broad.mit.edu	37	chr9	119976489	119976489	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatcagagaagacaaacttGataacccaacagaaatctaa	6	8	2	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119976489	T	T	119976489	1	4	138	0	1	0	0	0	0	0	0	0	1069	1305	45	3		3	ASTN2	9	119976489	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	6781610	119976489	21236942	250	121569											
SPTAN1	6709	broad.mit.edu	37	chr9	131347215	131347215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgggcatcacaaaccagGctctggggctgaataccatc	11	12	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131347215	T	T	131347215	1	4	138	0	1	0	0	0	0	0	0	0	15235	1218	42	3		3	SPTAN1	9	131347215	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	11370726	131347215	9866216	251	121570											
BAT2L1	84726	broad.mit.edu	37	chr9	134365892	134365892	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctcagtgatgtaattccaAtagatccttctgaccctcca	6	12	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134365892	G	G	134365892	1	3	138	0	1	0	0	0	0	0	0	0	1325	116	4	5		5	BAT2L1	9	134365892	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	3018677	134365892	6847539	252	121571											
QSOX2	169714	broad.mit.edu	37	chr9	139108575	139108575	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtccagggaacagctgcatGaggaaggagccacctgagag	15	10	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139108575	A	A	139108575	1	1	138	0	1	0	0	0	0	0	0	0	12992	1305	45	4		4	QSOX2	9	139108575	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	4742683	139108575	2104856	253	121572											
ABCA2	20	broad.mit.edu	37	chr9	139910731	139910731	+	Intron	SNP	T	G	G													gatgcccaccgccctgccccTccgacactcacatggtggtg							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139910731	G	G	139910731	1	3	138	0	1	0	0	0	0	0	0	0	32	1566	54	5		5	ABCA2	9	139910731	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	802156	139910731	1302700	254	121573	529	2									
ABCA2	20	broad.mit.edu	37	chr9	139910733	139910733	+	Intron	SNP	C	A	A													tgcccaccgccctgcccctcCgacactcacatggtggtggt							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139910733	A	A	139910733	1	1	138	0	1	0	0	0	0	0	0	0	32	667	23	1		1	ABCA2	9	139910733	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2	139910733	1302698	255	121574	529	2									
TUBB8	347688	broad.mit.edu	37	chr10	94735	94735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggtgggggaaggacggGggtctcaccgctggcctcgt	21	10	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94735	T	T	94735	1	4	138	0	1	0	0	0	0	0	0	0	16887	1247	43	2		2	TUBB8	10	94735	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08		94735	135440012	256	121575											
ACBD7	414149	broad.mit.edu	37	chr10	15058802	15058802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtggaggctgcagtgagCcgagatcgcatcactgcact	15	10	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15058802	A	A	15058802	1	1	138	0	1	0	0	0	0	0	0	0	127	754	26	3		3	ACBD7	10	15058802	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	14964067	15058802	120475945	257	121576											
ITGA8	8516	broad.mit.edu	37	chr10	15572984	15572984	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaaagcctagcacaagctaGacagtgattaaaacaattat	6	8	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15572984	T	T	15572984	1	4	138	0	1	0	0	0	0	0	0	0	7952	957	33	3		3	ITGA8	10	15572984	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	514182	15572984	119961763	258	121577											
CUBN	8029	broad.mit.edu	37	chr10	17110399	17110399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgtttcttagttgccaCttaagataacctgatttttc	5	7	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17110399	A	A	17110399	1	1	138	0	1	0	0	0	0	0	0	0	4084	580	20	3		3	CUBN	10	17110399	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1537415	17110399	118424348	259	121578											
CUBN	8029	broad.mit.edu	37	chr10	17130324	17130324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatagaaccgtaaggacCagtcaggatacctccacact	7	12	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17130324	A	A	17130324	3	1	138	1	0	0	0	0	1	0	0	0	4084	594	21	2	9297	2	CUBN	10	17130324	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	19925	17130324	118404423	260	121579											
ITGB1	3688	broad.mit.edu	37	chr10	33214878	33214878	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatatgcgctgttttccaAcaagttcattaaatacttct	5	9	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33214878	G	G	33214878	3	3	138	1	0	0	0	0	1	0	0	0	7960	43	2	5	1971	5	ITGB1	10	33214878	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	16084554	33214878	102319869	261	121580											
ANKRD30A	91074	broad.mit.edu	37	chr10	37414856	37414856	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatccataaagctgcctcCcggggacaagtccggaagct	11	12	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37414856	A	A	37414856	1	1	138	0	1	0	0	0	0	0	0	0	658	638	22	2		2	ANKRD30A	10	37414856	5'UTR	SNP	C	TCGA-49-4505-01A-01D-1265-08	4199978	37414856	98119891	262	121581											
RET	5979	broad.mit.edu	37	chr10	43602005	43602005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcagcttcgtgcgggcgaCcgtacatgactatagtaaga	13	10	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43602005	A	A	43602005	3	1	138	1	0	0	0	0	1	0	0	0	13343	507	18	3	1067	3	RET	10	43602005	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	6187149	43602005	91932742	263	121582											
ANUBL1	93550	broad.mit.edu	37	chr10	46119944	46119944	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacatgccacagagaaggttCttcccatttctctttgaaaa	6	10	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46119944	A	A	46119944	1	1	138	0	1	0	0	0	0	0	0	0	713	928	32	3		3	ANUBL1	10	46119944	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2517939	46119944	89414803	264	121583											
CHAT	1103	broad.mit.edu	37	chr10	50857453	50857453	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accccctgaaactccatggcCgcaaacactgacagctaaga	7	15	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50857453	T	T	50857453	1	4	138	0	1	0	0	0	0	0	0	0	3344	667	23	4		4	CHAT	10	50857453	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	4737509	50857453	84677294	265	121584											
OGDHL	55753	broad.mit.edu	37	chr10	50966397	50966397	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggcccccgagggcttcccTcccttgcggtggcccagggt	14	18	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50966397	C	C	50966397	1	2	138	0	1	0	0	0	0	0	0	0	10935	1566	54	5		5	OGDHL	10	50966397	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	108944	50966397	84568350	266	121585											
PCDH15	65217	broad.mit.edu	37	chr10	55569185	55569185	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatggggaatattctggctCtcttccatgttgtgtatgta	10	7	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55569185	G	G	55569185	3	3	138	1	0	0	0	0	1	0	0	0	11605	913	32	4	1291	4	PCDH15	10	55569185	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	4602788	55569185	79965562	267	121586											
PCDH15	65217	broad.mit.edu	37	chr10	55626616	55626616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagtatctttatcagtaGcctagacggaggggaaaaaa	11	7	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55626616	T	T	55626616	3	4	138	1	0	0	0	0	1	0	0	0	11605	985	34	3	4011	3	PCDH15	10	55626616	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	57431	55626616	79908131	268	121587											
PCDH15	65217	broad.mit.edu	37	chr10	55913109	55913109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaacttttcaccaccatGtcgttttttcccccaacaaa	2	15	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55913109	T	T	55913109	1	4	138	0	1	0	0	0	0	0	0	0	11605	1392	48	3		3	PCDH15	10	55913109	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	286493	55913109	79621638	269	121588											
ZWINT	11130	broad.mit.edu	37	chr10	58118282	58118283	+	Intron	DNP	CC	AA	AA													ccagcttctgtctccacctgCcagcccatgcccacctgttc							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	58118283	AA	AA	58118282	1	1	138	0	1	0	0	0	0	0	0	0	18378	754	26	3		3	ZWINT	10	58118282	Intron	DNP	CC	TCGA-49-4505-01A-01D-1265-08	2205173	58118282	77416465	270	121589											
FAM13C	220965	broad.mit.edu	37	chr10	61022292	61022292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggagcttggctccgggcCcgcagcttccggtttcccat	13	14	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61022292	A	A	61022292	3	1	138	1	0	0	0	0	1	0	0	0	5500	623	22	2	639	2	FAM13C	10	61022292	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2904010	61022292	74512455	271	121590											
CTNNA3	29119	broad.mit.edu	37	chr10	68535156	68535156	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgcaatgaataacagtttCatttagcccctatgtttctg	6	10	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68535156	A	A	68535156	1	1	138	0	1	0	0	0	0	0	0	0	4048	841	29	3		3	CTNNA3	10	68535156	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	7512864	68535156	66999591	272	121591											
UNC5B	219699	broad.mit.edu	37	chr10	73053228	73053228	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacccacaggcctcctGctgtgccgccccgtcatcct	10	18	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73053228	A	A	73053228	2	1	138	1	0	0	0	0	0	0	0	1	17118	1306	46	4		4	UNC5B	10	73053228	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	4518072	73053228	62481519	273	121592											
PDE6C	5146	broad.mit.edu	37	chr10	95373002	95373002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcagaggtcttggcagGgtcagggaggaacaaatggg	20	5	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95373002	T	T	95373002	1	4	138	0	1	0	0	0	0	0	0	0	11741	1247	43	2		2	PDE6C	10	95373002	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	22319774	95373002	40161745	274	121593											
HELLS	3070	broad.mit.edu	37	chr10	96317849	96317849	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatatgcgttttttttttAaatgttgcactttccacttg	6	6	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96317849	T	T	96317849	1	4	138	0	1	0	0	0	0	0	0	0	7113	377	13	5		5	HELLS	10	96317849	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	944847	96317849	39216898	275	121594											
CYP2C9	1559	broad.mit.edu	37	chr10	96746005	96746005	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccattggaacttacatgtgCctcctctgcagtggtacaat	8	11	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96746005	A	A	96746005	1	1	138	0	1	0	0	0	0	0	0	0	4201	754	26	3		3	CYP2C9	10	96746005	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	428156	96746005	38788742	276	121595											
SORBS1	10580	broad.mit.edu	37	chr10	97158866	97158866	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcatcctttgctcttttttCaatagccttgccaggtgagg	9	10	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97158866	G	G	97158866	3	3	138	1	0	0	0	0	1	0	0	0	15041	835	29	4	3097	4	SORBS1	10	97158866	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	412861	97158866	38375881	277	121596											
PIK3AP1	118788	broad.mit.edu	37	chr10	98469292	98469292	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggattagcaacttttctAgggcttgcttatctttagaa	8	8	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98469292	G	G	98469292	1	3	138	0	1	0	0	0	0	0	0	0	12003	435	15	5		5	PIK3AP1	10	98469292	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	1310426	98469292	37065455	278	121597											
SEC31B	25956	broad.mit.edu	37	chr10	102248506	102248506	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacaagatagagacagcatGtccaggggcagtgagaagag	15	6	0	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102248506	A	A	102248506	1	1	138	0	1	0	0	0	0	0	0	0	14112	1392	48	4		4	SEC31B	10	102248506	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	3779214	102248506	33286241	279	121598											
GFRA1	2674	broad.mit.edu	37	chr10	117885022	117885022	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgtcgtcgaggttgcaGgccttcgctgcatccaggca	12	12	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117885022	T	T	117885022	2	4	138	1	0	0	0	0	0	0	0	1	6411	987	35	2		2	GFRA1	10	117885022	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	15636516	117885022	17649725	280	121599											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118357673	118357673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggatctagatggcatctGggcgggtaaagtcatggtgg	17	6	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118357673	T	T	118357673	3	4	138	1	0	0	0	0	1	0	0	0	12245	1357	47	2	835	2	PNLIPRP1	10	118357673	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	472651	118357673	17177074	281	121600											
MKI67	4288	broad.mit.edu	37	chr10	129901424	129901424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaattacatcttctgcgtCcagcttccgctttgcaggtt	8	13	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129901424	A	A	129901424	3	1	138	1	0	0	0	0	1	0	0	0	9691	855	30	3	1102	3	MKI67	10	129901424	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	11543751	129901424	5633323	282	121601											
TNNT3	7140	broad.mit.edu	37	chr11	1946372	1946372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtccaaggccccggccCccatgcccactccccagcct	10	21	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1946372	A	A	1946372	1	1	138	0	1	0	0	0	0	0	0	0	16455	638	22	2		2	TNNT3	11	1946372	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08		1946372	133060144	283	121602											
OR52R1	119695	broad.mit.edu	37	chr11	4824745	4824746	+	Frame_Shift_Ins	INS	-	T	T													ataaatgatggggttgagcaINStgggaggtatcagtagatag							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4824746	T	T	4824745	7	5	138	1	0	1	1	0	0	0	0	0	11225	217	8	0	84	0	OR52R1	11	4824745	Frame_Shift_Ins	INS	-	TCGA-49-4505-01A-01D-1265-08	2878373	4824745	130181771	284	121603											
OR52J3	119679	broad.mit.edu	37	chr11	5068622	5068622	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attatcccaccctctctcaaCcccatcatttatggggtgag	6	14	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5068622	T	T	5068622	2	4	138	1	0	0	0	0	0	0	0	1	11216	506	18	4		4	OR52J3	11	5068622	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	243877	5068622	129937894	285	121604											
OR51I2	390064	broad.mit.edu	37	chr11	5474954	5474954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatccatggccacactgcCcactgtactccgaaccttct	5	17	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5474954	A	A	5474954	3	1	138	1	0	0	0	0	1	0	0	0	11195	623	22	2	238	2	OR51I2	11	5474954	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	406332	5474954	129531562	286	121605											
OR56B4	196335	broad.mit.edu	37	chr11	6129250	6129250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggacattggcctggccaCcaccatcatgcccaagatcc	10	15	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6129250	A	A	6129250	3	1	138	1	0	0	0	0	1	0	0	0	11232	507	18	3	244	3	OR56B4	11	6129250	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	654296	6129250	128877266	287	121606											
USP47	55031	broad.mit.edu	37	chr11	11952185	11952185	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatatttcatgcttagaAgtggaatctttttaatctac	5	5	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11952185	G	G	11952185	1	3	138	0	1	0	0	0	0	0	0	0	17205	87	3	5		5	USP47	11	11952185	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	5822935	11952185	123054331	288	121607											
PTH	5741	broad.mit.edu	37	chr11	13514010	13514010	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtctgcctctccaagaCttttttcatggctctcaacc	5	14	4	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13514010	T	T	13514010	3	4	138	1	0	0	0	0	1	0	0	0	12863	565	20	4	61	4	PTH	11	13514010	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	1561825	13514010	121492506	289	121608											
RRAS2	22800	broad.mit.edu	37	chr11	14316111	14316111	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatctgtctttgaaacttaTagatttcttcaaaacttaaa	4	6	4	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14316111	C	C	14316111	3	2	138	1	0	0	0	0	1	0	0	0	13788	1406	49	5	312	5	RRAS2	11	14316111	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	802101	14316111	120690405	290	121609											
NELL1	4745	broad.mit.edu	37	chr11	20699649	20699649	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtggcagaggttggggaGgagggtctgtctggggagtg	23	3	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20699649	T	T	20699649	1	4	138	0	1	0	0	0	0	0	0	0	10428	1015	35	2		2	NELL1	11	20699649	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	6383538	20699649	114306867	291	121610											
ANO5	203859	broad.mit.edu	37	chr11	22233021	22233021	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaatcagtttctttAggtggggggaaaacacatca	9	5	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22233021	T	T	22233021	1	4	138	0	1	0	0	0	0	0	0	0	700	435	15	5		5	ANO5	11	22233021	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	1533372	22233021	112773495	292	121611											
LUZP2	338645	broad.mit.edu	37	chr11	24759849	24759849	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaaacaccaggctactGtaagtgtgtttcttctttgt	8	8	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24759849	T	T	24759849	5	4	138	1	0	0	0	0	0	0	1	0	9174	1391	48	3	348	3	LUZP2	11	24759849	Splice_Site	SNP	G	TCGA-49-4505-01A-01D-1265-08	2526828	24759849	110246667	293	121612											
KIF18A	81930	broad.mit.edu	37	chr11	28116239	28116239	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcttctttaatctcaTccatgcatttgtaaaggtgt	5	8	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28116239	C	C	28116239	3	2	138	1	0	0	0	0	1	0	0	0	8350	1435	50	5	2322	5	KIF18A	11	28116239	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	3356390	28116239	106890277	294	121613											
WT1	7490	broad.mit.edu	37	chr11	32414287	32414287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtccttgaagtcacactGgtatggtttctcaccttggg	10	10	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32414287	T	T	32414287	3	4	138	1	0	0	0	0	1	0	0	0	17535	1357	47	2	301	2	WT1	11	32414287	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	4298048	32414287	102592229	295	121614											
OR4A15	81328	broad.mit.edu	37	chr11	55135556	55135556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttactaatctacatggtgaCgataatgggcaacctgctta	8	9	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55135556	T	T	55135556	3	4	138	1	0	0	0	0	1	0	0	0	11134	536	19	4	199	4	OR4A15	11	55135556	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	22721269	55135556	79870960	296	121615											
OR5AS1	219447	broad.mit.edu	37	chr11	55798578	55798578	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatcactgtgttgagcatCaagtcctcaggtggcagaag	11	10	4	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55798578	A	A	55798578	2	1	138	1	0	0	0	0	0	0	0	1	11240	816	29	3		3	OR5AS1	11	55798578	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	663022	55798578	79207938	297	121616											
OR8J1	219477	broad.mit.edu	37	chr11	56125085	56125085	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttggcctgacaaattatGctgcagcctattgtacttgc	10	9	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56125085	T	T	56125085	1	4	138	0	1	0	0	0	0	0	0	0	11335	1334	46	3		3	OR8J1	11	56125085	5'Flank	SNP	G	TCGA-49-4505-01A-01D-1265-08	326507	56125085	78881431	298	121617											
OR5B17	219965	broad.mit.edu	37	chr11	58125640	58125640	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattttgccttctcaacaacCttcatgaatgcattcttcac	3	12	4	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58125640	T	T	58125640	2	4	138	1	0	0	0	0	0	0	0	1	11243	680	24	4		4	OR5B17	11	58125640	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	2000555	58125640	76880876	299	121618											
OR5B2	390190	broad.mit.edu	37	chr11	58189942	58189942	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattttgtctgtgtccatggAgtggctggagctgggctgca	15	8	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58189942	C	C	58189942	3	2	138	1	0	0	0	0	1	0	0	0	11244	304	11	5	140	5	OR5B2	11	58189942	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	64302	58189942	76816574	300	121619											
TCN1	6947	broad.mit.edu	37	chr11	59626664	59626664	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgttctttaaactgccTtcatctgctttgatctgccc	6	12	4	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59626664	C	C	59626664	2	2	138	1	0	0	0	0	0	0	0	1	15828	1606	56	5		5	TCN1	11	59626664	Silent	SNP	T	TCGA-49-4505-01A-01D-1265-08	1436722	59626664	75379852	301	121620											
MS4A14	84689	broad.mit.edu	37	chr11	60163969	60163969	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatctctgagggctccatGtgactctggtggagaggtag	14	9	3	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60163969	T	T	60163969	1	4	138	0	1	0	0	0	0	0	0	0	9952	1392	48	3		3	MS4A14	11	60163969	5'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	537305	60163969	74842547	302	121621											
MS4A14	84689	broad.mit.edu	37	chr11	60183087	60183087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttaacactctctaggagtCctttagtctcccaaccaggt	7	12	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60183087	A	A	60183087	3	1	138	1	0	0	0	0	1	0	0	0	9952	855	30	3	664	3	MS4A14	11	60183087	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	19118	60183087	74823429	303	121622											
KRTAP5-10	387273	broad.mit.edu	37	chr11	71276953	71276953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggggggctgtggttcttGtgggggctccaaggggggct	21	7	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71276953	T	T	71276953	3	4	138	1	0	0	0	0	1	0	0	0	8631	1377	48	3	322	3	KRTAP5-10	11	71276953	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	11093866	71276953	63729563	304	121623											
P4HA3	283208	broad.mit.edu	37	chr11	73967117	73967117	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacacatctcatttaatcttCacagcaactctatgaggtag	5	11	4	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73967117	A	A	73967117	1	1	138	0	1	0	0	0	0	0	0	0	11452	841	29	3		3	P4HA3	11	73967117	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2690164	73967117	61039399	305	121624											
GRM5	2915	broad.mit.edu	37	chr11	88300589	88300589	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgaacgcatagaaggtGcagctcaaaatcaacaatcc	8	10	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88300589	T	T	88300589	4	4	138	1	0	0	0	0	0	1	0	0	6866	1311	46	3	1388	3	GRM5	11	88300589	Nonsense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	14333472	88300589	46705927	306	121625											
FAT3	120114	broad.mit.edu	37	chr11	92613965	92613965	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagattacagcctgcttcCcaaacccctgccggaatgga	9	14	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92613965	T	T	92613965	3	4	138	1	0	0	0	0	1	0	0	0	5748	623	22	4	12282	4	FAT3	11	92613965	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	4313376	92613965	42392551	307	121626											
MTMR2	8898	broad.mit.edu	37	chr11	95583771	95583771	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttcctacttactgggataCggcctcttgatctgaaggat	9	10	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95583771	T	T	95583771	3	4	138	1	0	0	0	0	1	0	0	0	10038	536	19	4	1166	4	MTMR2	11	95583771	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2969806	95583771	39422745	308	121627											
NCAM1	4684	broad.mit.edu	37	chr11	113076196	113076196	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctctagtgaaaggggttcTttgtgagagaagcagctgtt	15	5	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113076196	G	G	113076196	1	3	138	0	1	0	0	0	0	0	0	0	10297	1624	56	5		5	NCAM1	11	113076196	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	17492425	113076196	21930320	309	121628											
TMPRSS13	84000	broad.mit.edu	37	chr11	117799992	117799992	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctggcccgaggcctgaggTcacactcaccccgtggctgt	12	15	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117799992	A	A	117799992	1	1	138	0	1	0	0	0	0	0	0	0	16368	1682	58	5		5	TMPRSS13	11	117799992	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	4723796	117799992	17206524	310	121629											
SLC6A12	6539	broad.mit.edu	37	chr12	306087	306087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcagggaggctccagggcGtgtgctgcccttggggaaga	18	9	1	1	rs145721574	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	306087	T	T	306087	1	4	138	0	1	0	0	0	0	0	0	0	14789	1160	40	3		3	SLC6A12	12	306087	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08		306087	133545808	311	121630											
ADIPOR2	79602	broad.mit.edu	37	chr12	1866754	1866754	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatcagggtagcggatggTgccgggcatcatgagtcacc	16	9	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1866754	G	G	1866754	1	3	138	0	1	0	0	0	0	0	0	0	319	1711	59	5		5	ADIPOR2	12	1866754	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	1560667	1866754	131985141	312	121631											
CD4	920	broad.mit.edu	37	chr12	6909341	6909341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttaggcacttgcttctgGtgctgcaactgggtaagttc	11	9	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6909341	T	T	6909341	3	4	138	1	0	0	0	0	1	0	0	0	3044	1261	44	3	39	3	CD4	12	6909341	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	5042587	6909341	126942554	313	121632											
PRB3	5544	broad.mit.edu	37	chr12	11421100	11421100	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctggaggaggtggacacAcggcattcactgaatagttg	13	8	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11421100	G	G	11421100	1	3	138	0	1	0	0	0	0	0	0	0	12550	174	6	5		5	PRB3	12	11421100	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	4511759	11421100	122430795	314	121633											
PRB4	5545	broad.mit.edu	37	chr12	11461837	11461837	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaggaggtgggggacatAcggcattcactgaatagttg	16	6	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11461837	G	G	11461837	1	3	138	0	1	0	0	0	0	0	0	0	12551	406	14	5		5	PRB4	12	11461837	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	40737	11461837	122390058	315	121634											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	138	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	13936448	25398285	108453610	316	121635											
IFLTD1	160492	broad.mit.edu	37	chr12	25699521	25699521	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagaagaaagaagtaaccagGaaagaagtaaataaaatgac	9	4	0	5			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25699521	C	C	25699521	1	2	138	0	1	0	0	0	0	0	0	0	7600	1189	41	4		4	IFLTD1	12	25699521	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	301236	25699521	108152374	317	121636											
SSPN	8082	broad.mit.edu	37	chr12	26377286	26377286	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcatatcaggttgacgaaCggacatgtattcaattttct	7	8	4	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26377286	T	T	26377286	3	4	138	1	0	0	0	0	1	0	0	0	15306	527	19	4	346	4	SSPN	12	26377286	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	677765	26377286	107474609	318	121637											
ITPR2	3709	broad.mit.edu	37	chr12	26596496	26596496	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatctgtgcagtgtggtTggcataatactttaaggctt	10	7	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26596496	A	A	26596496	3	1	138	1	0	0	0	0	1	0	0	0	7991	1812	63	5	1723	5	ITPR2	12	26596496	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	219210	26596496	107255399	319	121638											
C12orf40	283461	broad.mit.edu	37	chr12	40114522	40114522	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttaagaatatattcttTgaagtgattgaatgcatttt	7	2	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40114522	C	C	40114522	1	2	138	0	1	0	0	0	0	0	0	0	1699	1827	63	5		5	C12orf40	12	40114522	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	13518026	40114522	93737373	320	121639											
NCKAP5L	57701	broad.mit.edu	37	chr12	50197604	50197604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggccgagaggaaggccCatggcacccaaaaacctgca	12	13	0	1	rs149294558	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50197604	A	A	50197604	1	1	138	0	1	0	0	0	0	0	0	0	10319	609	21	2		2	NCKAP5L	12	50197604	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	10083082	50197604	83654291	321	121640											
SCN8A	6334	broad.mit.edu	37	chr12	52201252	52201252	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tattatacagatctaaaactCgcaagtgaaagattgtttac	6	6	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52201252	G	G	52201252	1	3	138	0	1	0	0	0	0	0	0	0	14037	899	31	4		4	SCN8A	12	52201252	3'UTR	SNP	C	TCGA-49-4505-01A-01D-1265-08	2003648	52201252	81650643	322	121641											
PIP4K2C	79837	broad.mit.edu	37	chr12	57995329	57995329	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggggcagagatctctacTgtccatccggagcagtatgc	13	11	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57995329	C	C	57995329	2	2	138	1	0	0	0	0	0	0	0	1	12033	1567	55	5		5	PIP4K2C	12	57995329	Silent	SNP	T	TCGA-49-4505-01A-01D-1265-08	5794077	57995329	75856566	323	121642											
CYP27B1	1594	broad.mit.edu	37	chr12	58160901	58160901	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccctatttaacctttgggtGaggtgatgacgccccctctc	9	14	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58160901	A	A	58160901	1	1	138	0	1	0	0	0	0	0	0	0	4192	1305	45	4		4	CYP27B1	12	58160901	5'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	165572	58160901	75690994	324	121643											
HMGA2	8091	broad.mit.edu	37	chr12	66221790	66221790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacaattaggaaccaaccGgtgagccctctcctaagaga	8	13	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66221790	T	T	66221790	3	4	138	1	0	0	0	0	1	0	0	0	7291	1116	39	1	127	1	HMGA2	12	66221790	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	8060889	66221790	67630105	325	121644											
LGR5	8549	broad.mit.edu	37	chr12	71977220	71977220	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caataccctggaacaggagcAccgggtgtactcacccagcc	10	15	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71977220	T	T	71977220	1	4	138	0	1	0	0	0	0	0	0	0	8829	174	6	5		5	LGR5	12	71977220	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	5755430	71977220	61874675	326	121645											
GLIPR1	11010	broad.mit.edu	37	chr12	75875665	75875665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcatgggccagcaattgcCagttttcacataatacacgg	9	10	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75875665	A	A	75875665	3	1	138	1	0	0	0	0	1	0	0	0	6505	595	21	2	232	2	GLIPR1	12	75875665	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	3898445	75875665	57976230	327	121646											
NAV3	89795	broad.mit.edu	37	chr12	78400364	78400364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacctccaccatgttgaCtgtaaagcagtcaagtacag	8	12	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78400364	A	A	78400364	3	1	138	1	0	0	0	0	1	0	0	0	10279	565	20	3	1076	3	NAV3	12	78400364	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2524699	78400364	55451531	328	121647											
BTBD11	121551	broad.mit.edu	37	chr12	107914364	107914364	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagtcggagctgaggacCatcgagcagtctttgctggc	14	11	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107914364	A	A	107914364	2	1	138	1	0	0	0	0	0	0	0	1	1548	581	21	2		2	BTBD11	12	107914364	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	29514000	107914364	25937531	329	121648											
ARPC3	10094	broad.mit.edu	37	chr12	110878302	110878302	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caactgtcaacagttgtggaGttgaataaaataaaatgatc	8	5	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110878302	C	C	110878302	1	2	138	0	1	0	0	0	0	0	0	0	976	1044	36	4		4	ARPC3	12	110878302	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	2963938	110878302	22973593	330	121649											
TBX3	6926	broad.mit.edu	37	chr12	115114056	115114056	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggttggtgccccatccccCttcaactcttccaggccacg	8	18	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115114056	G	G	115114056	1	3	138	0	1	0	0	0	0	0	0	0	15781	696	24	4		4	TBX3	12	115114056	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	4235754	115114056	18737839	331	121650											
GOLGA3	2802	broad.mit.edu	37	chr12	133353213	133353213	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcccagcgcctcacacaCaggtacctgcagcagctgct	10	16	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133353213	G	G	133353213	1	3	138	0	1	0	0	0	0	0	0	0	6618	493	17	4		4	GOLGA3	12	133353213	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	18239157	133353213	498682	332	121651											
KL	9365	broad.mit.edu	37	chr13	33635122	33635122	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacatcaccccagtggtgGccctgtggcagcctatggcc	11	15	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33635122	A	A	33635122	3	1	138	1	0	0	0	0	1	0	0	0	8402	1203	42	4	1920	4	KL	13	33635122	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08		33635122	81534756	333	121652											
TRPC4	7223	broad.mit.edu	37	chr13	38225510	38225510	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggggctcgggatgacattGaagggagtaggcagagtacc	17	6	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38225510	A	A	38225510	2	1	138	1	0	0	0	0	0	0	0	1	16705	1281	45	4		4	TRPC4	13	38225510	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	4590388	38225510	76944368	334	121653											
LRCH1	23143	broad.mit.edu	37	chr13	47297247	47297247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttctttgtttctttgaGtggtaaatgaattattttgg	9	2	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47297247	T	T	47297247	1	4	138	0	1	0	0	0	0	0	0	0	9019	1044	36	3		3	LRCH1	13	47297247	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	9071737	47297247	67872631	335	121654											
KLHL1	57626	broad.mit.edu	37	chr13	70681814	70681814	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcacatcgaagtctttTcgcccagagcctgacatgct	8	13	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70681814	A	A	70681814	2	1	138	1	0	0	0	0	0	0	0	1	8436	1770	62	5		5	KLHL1	13	70681814	Silent	SNP	T	TCGA-49-4505-01A-01D-1265-08	23384567	70681814	44488064	336	121655											
DACH1	1602	broad.mit.edu	37	chr13	72134055	72134055	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctcccctcctccagagaGggggcaggtgaggggctatc	14	13	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72134055	A	A	72134055	2	1	138	1	0	0	0	0	0	0	0	1	4253	987	35	4		4	DACH1	13	72134055	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	1452241	72134055	43035823	337	121656											
MYCBP2	23077	broad.mit.edu	37	chr13	77798752	77798752	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaaaagcagtgtaattttCactatttaagatttatagaa	5	4	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77798752	A	A	77798752	1	1	138	0	1	0	0	0	0	0	0	0	10112	841	29	3		3	MYCBP2	13	77798752	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	5664697	77798752	37371126	338	121657											
ERCC5	2073	broad.mit.edu	37	chr13	103460022	103460022	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttatccaacagcctgggCaagctacctctcgcatggga	9	13	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103460022	T	T	103460022	2	4	138	1	0	0	0	0	0	0	0	1	5258	697	25	4		4	ERCC5	13	103460022	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	25661270	103460022	11709856	339	121658											
MYO16	23026	broad.mit.edu	37	chr13	109614134	109614134	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctatagtagaattcagtgaGggggggaaattgtctacttt	12	4	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109614134	C	C	109614134	1	2	138	0	1	0	0	0	0	0	0	0	10158	1015	35	4		4	MYO16	13	109614134	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	6154112	109614134	5555744	340	121659											
COL4A2	1284	broad.mit.edu	37	chr13	111084624	111084624	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaccagatgttatctggGtcctggggtaaagaaaacca	10	9	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111084624	T	T	111084624	1	4	138	0	1	0	0	0	0	0	0	0	3722	1276	44	3		3	COL4A2	13	111084624	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1470490	111084624	4085254	341	121660											
POTEG	404785	broad.mit.edu	37	chr14	19566042	19566042	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactttctgactacaaagaAaaacagatgctaaaagtctc	5	8	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19566042	G	G	19566042	2	3	138	1	0	0	0	0	0	0	0	1	12362	11	1	5		5	POTEG	14	19566042	Silent	SNP	A	TCGA-49-4505-01A-01D-1265-08		19566042	87783498	342	121661											
OR4K15	81127	broad.mit.edu	37	chr14	20443610	20443610	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaataactcatgaaaacCcagacacatacatagcaata	4	9	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20443610	A	A	20443610	1	1	138	0	1	0	0	0	0	0	0	0	11164	638	22	2		2	OR4K15	14	20443610	5'Flank	SNP	C	TCGA-49-4505-01A-01D-1265-08	877568	20443610	86905930	343	121662											
BAZ1A	11177	broad.mit.edu	37	chr14	35224152	35224152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaatatctctgtccacaCagaaaacttaactggaaaga	5	9	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35224152	A	A	35224152	1	1	138	0	1	0	0	0	0	0	0	0	1334	493	17	3		3	BAZ1A	14	35224152	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	14780542	35224152	72125388	344	121663											
RALGAPA1	253959	broad.mit.edu	37	chr14	36128440	36128440	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagttaacggcaatgactgaGatttcactcattcattctac	6	9	4	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36128440	C	C	36128440	1	2	138	0	1	0	0	0	0	0	0	0	13121	957	33	4		4	RALGAPA1	14	36128440	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	904288	36128440	71221100	345	121664											
LRFN5	145581	broad.mit.edu	37	chr14	42357300	42357300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattttttttaattggcaGtgctgttctgtgttgtaatt	9	4	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42357300	T	T	42357300	1	4	138	0	1	0	0	0	0	0	0	0	9028	1044	36	3		3	LRFN5	14	42357300	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	6228860	42357300	64992240	346	121665											
DLGAP5	9787	broad.mit.edu	37	chr14	55625228	55625228	+	Intron	SNP	A	C	C													acaaaaaaaataaaaaatcaAaaacaactaacctgagaata					rs145664806	by1000genomes	TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55625228	C	C	55625228	1	2	138	0	1	0	0	0	0	0	0	0	4603	29	1	5		5	DLGAP5	14	55625228	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	13267928	55625228	51724312	347	121666	530	2									
DLGAP5	9787	broad.mit.edu	37	chr14	55625237	55625237	+	Intron	SNP	A	T	T													ataaaaaatcaaaaacaactAacctgagaataatttaacag							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55625237	T	T	55625237	1	4	138	0	1	0	0	0	0	0	0	0	4603	377	13	5		5	DLGAP5	14	55625237	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	9	55625237	51724303	348	121667	530	2									
SYNE2	23224	broad.mit.edu	37	chr14	64449310	64449310	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataatagaaagacaatatcGtgtcattaagatagtgtgtt	8	4	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64449310	T	T	64449310	1	4	138	0	1	0	0	0	0	0	0	0	15565	1160	40	3		3	SYNE2	14	64449310	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	8824073	64449310	42900230	349	121668											
SYNE2	23224	broad.mit.edu	37	chr14	64678627	64678627	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtggccttgctgtctgtctGaactcttgttccgtggtcag	13	10	4	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64678627	A	A	64678627	1	1	138	0	1	0	0	0	0	0	0	0	15565	1305	45	4		4	SYNE2	14	64678627	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	229317	64678627	42670913	350	121669											
MTHFD1	4522	broad.mit.edu	37	chr14	64892569	64892569	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataaagttttactgattTaaaactttgtgaattgttgg	7	2	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64892569	G	G	64892569	1	3	138	0	1	0	0	0	0	0	0	0	10021	1769	61	5		5	MTHFD1	14	64892569	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	213942	64892569	42456971	351	121670											
ZFYVE26	23503	broad.mit.edu	37	chr14	68260749	68260749	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaaacagtcctttcccttCtcccagctaaaatctggcca	5	14	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68260749	T	T	68260749	1	4	138	0	1	0	0	0	0	0	0	0	17794	928	32	4		4	ZFYVE26	14	68260749	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	3368180	68260749	39088791	352	121671											
ZFYVE1	53349	broad.mit.edu	37	chr14	73445726	73445726	+	Intron	DEL	C	-	-													gacggctaaaggagccagtgCcacttacacagaacagcctg							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73445726	-	-	73445726	6	5	138	0	1	1	0	1	0	0	0	0	17789	754	26	0		0	ZFYVE1	14	73445726	Intron	DEL	C	TCGA-49-4505-01A-01D-1265-08	5184977	73445726	33903814	353	121672											
LTBP2	4053	broad.mit.edu	37	chr14	75078524	75078524	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaccagccggctcgtatcTccctacggggtccctttggg	11	16	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75078524	A	A	75078524	4	1	138	1	0	0	0	0	0	1	0	0	9161	1559	54	5	5485	5	LTBP2	14	75078524	Nonsense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	1632798	75078524	32271016	354	121673											
GTF2A1	2957	broad.mit.edu	37	chr14	81668977	81668977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaagagtggtaaaccggCaaaagtcggaaaaaatacaa	10	7	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81668977	A	A	81668977	1	1	138	0	1	0	0	0	0	0	0	0	6917	725	25	3		3	GTF2A1	14	81668977	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	6590453	81668977	25680563	355	121674											
SLC24A4	123041	broad.mit.edu	37	chr14	92959804	92959804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcaagcccagttcccaCactctgtcctcccaggtcct	6	20	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92959804	A	A	92959804	1	1	138	0	1	0	0	0	0	0	0	0	14582	493	17	3		3	SLC24A4	14	92959804	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	11290827	92959804	14389736	356	121675											
KIAA1409	57578	broad.mit.edu	37	chr14	94148874	94148874	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatgaaaataaacactaAttaatttaagccaagttaat	4	6	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94148874	G	G	94148874	1	3	138	0	1	0	0	0	0	0	0	0	8300	116	4	5		5	KIAA1409	14	94148874	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	1189070	94148874	13200666	357	121676											
PPP4R4	57718	broad.mit.edu	37	chr14	94708573	94708573	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgattataatattaggtattGatgcatgtttttctttcctt	6	5	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94708573	T	T	94708573	1	4	138	0	1	0	0	0	0	0	0	0	12506	1305	45	3		3	PPP4R4	14	94708573	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	559699	94708573	12640967	358	121677											
SERPINA11	256394	broad.mit.edu	37	chr14	94915055	94915055	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatgggcaagaaggggctgAcagtggacagaggccaggat	17	8	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94915055	T	T	94915055	4	4	138	1	0	0	0	0	0	1	0	0	14201	273	10	5	1227	5	SERPINA11	14	94915055	Nonsense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	206482	94915055	12434485	359	121678											
DICER1	23405	broad.mit.edu	37	chr14	95556997	95556997	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcgtaagttctctcagcCgggctgtaaaaaatccaaac	8	12	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95556997	A	A	95556997	2	1	138	1	0	0	0	0	0	0	0	1	4561	639	23	1		1	DICER1	14	95556997	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	641942	95556997	11792543	360	121679											
HDC	3067	broad.mit.edu	37	chr15	50535205	50535205	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgagacaattaggacccTgtttgaaaaataaaggaagt	10	5	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50535205	A	A	50535205	1	1	138	0	1	0	0	0	0	0	0	0	7082	1594	55	5		5	HDC	15	50535205	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08		50535205	51996187	361	121680											
TLE3	7090	broad.mit.edu	37	chr15	70344875	70344875	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagaagatctgcaggtggtGggagggcagatggactgagc	19	6	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70344875	T	T	70344875	1	4	138	0	1	0	0	0	0	0	0	0	16063	1363	47	2		2	TLE3	15	70344875	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	19809670	70344875	32186517	362	121681											
LRRC49	54839	broad.mit.edu	37	chr15	71151850	71151850	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgaggtcaaggtgcagTaggaggagattgccaaccgc	15	8	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71151850	C	C	71151850	1	2	138	0	1	0	0	0	0	0	0	0	9093	1653	57	5		5	LRRC49	15	71151850	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	806975	71151850	31379542	363	121682											
ACAN	176	broad.mit.edu	37	chr15	89402517	89402517	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgccctgcagagacgcatcTagaaattgagtcctcaagcc	10	13	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89402517	C	C	89402517	3	2	138	1	0	0	0	0	1	0	0	0	117	1522	53	5	6743	5	ACAN	15	89402517	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	18250667	89402517	13128875	364	121683											
BAIAP3	8938	broad.mit.edu	37	chr16	1391655	1391655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagatgggcgttgtgccacCggggccacacggctggcaac	16	12	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1391655	A	A	1391655	1	1	138	0	1	0	0	0	0	0	0	0	1309	667	23	1		1	BAIAP3	16	1391655	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08		1391655	88963098	365	121684											
TSC2	7249	broad.mit.edu	37	chr16	2115705	2115705	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccaccagctgcatctgcgTtgtgttggagtctgttcccc	11	13	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2115705	C	C	2115705	1	2	138	0	1	0	0	0	0	0	0	0	16731	1740	60	5		5	TSC2	16	2115705	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	724050	2115705	88239048	366	121685											
ABCA3	21	broad.mit.edu	37	chr16	2376065	2376065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgacggtcttggcagCgtcactgtgagaagggatgt	15	8	3	2	rs150902383		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2376065	A	A	2376065	3	1	138	1	0	0	0	0	1	0	0	0	33	768	27	3	4965	3	ABCA3	16	2376065	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	260360	2376065	87978688	367	121686											
USP7	7874	broad.mit.edu	37	chr16	9009019	9009019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccattctctgtgtttagaCtatttaaaaaaacatcactt	4	8	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009019	A	A	9009019	1	1	138	0	1	0	0	0	0	0	0	0	17215	580	20	3		3	USP7	16	9009019	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	6632954	9009019	81345734	368	121687											
GRIN2A	2903	broad.mit.edu	37	chr16	9857046	9857046	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggcattttcttgtacacgCgtctattgctgcaggaattt	9	8	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9857046	T	T	9857046	3	4	138	1	0	0	0	0	1	0	0	0	6845	768	27	4	43	4	GRIN2A	16	9857046	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	848027	9857046	80497707	369	121688											
CLEC16A	23274	broad.mit.edu	37	chr16	11217633	11217633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtggaggacgacagccGtgccctgaacatcaccatcc	12	14	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11217633	A	A	11217633	3	1	138	1	0	0	0	0	1	0	0	0	3532	1145	40	4	2381	4	CLEC16A	16	11217633	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	1360587	11217633	79137120	370	121689											
PDXDC1	23042	broad.mit.edu	37	chr16	15082576	15082576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagcggatgccatgcaatGcatagctgttctgcagcacg	12	10	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15082576	T	T	15082576	1	4	138	0	1	0	0	0	0	0	0	0	11790	1334	46	3		3	PDXDC1	16	15082576	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	3864943	15082576	75272177	371	121690											
C16orf63	123811	broad.mit.edu	37	chr16	15973809	15973809	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcaaataagattttgaAaagaatcacatttaccagac	5	6	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15973809	G	G	15973809	1	3	138	0	1	0	0	0	0	0	0	0	1840	29	1	5		5	C16orf63	16	15973809	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	891233	15973809	74380944	372	121691											
SMG1	23049	broad.mit.edu	37	chr16	18880640	18880640	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttcctgggaaaagcagtTtcatatttaaaagacaatga	7	7	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18880640	G	G	18880640	1	3	138	0	1	0	0	0	0	0	0	0	14909	1856	64	5		5	SMG1	16	18880640	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	2906831	18880640	71474113	373	121692											
GP2	2813	broad.mit.edu	37	chr16	20327355	20327355	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactgcggacttgacttcttGagcaagactgtagggatgat	12	8	1	4	rs140017290		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20327355	T	T	20327355	4	4	138	1	0	0	0	0	0	1	0	0	6647	1294	45	3	192	3	GP2	16	20327355	Nonsense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	1446715	20327355	70027398	374	121693											
ACSM5	54988	broad.mit.edu	37	chr16	20432544	20432544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctactaactgtttttacCgtggtagtgccacctagtgt	10	9	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20432544	A	A	20432544	1	1	138	0	1	0	0	0	0	0	0	0	187	667	23	1		1	ACSM5	16	20432544	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	105189	20432544	69922209	375	121694											
RBBP6	5930	broad.mit.edu	37	chr16	24582841	24582841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccagagagtattcaagttCcaaacgtagagatgaaaaga	9	7	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24582841	A	A	24582841	3	1	138	1	0	0	0	0	1	0	0	0	13211	855	30	3	4578	3	RBBP6	16	24582841	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	4150297	24582841	65771912	376	121695											
KIAA0556	23247	broad.mit.edu	37	chr16	27710904	27710904	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccagtctgctggaggagaAggaagagacccttgaggtca	15	8	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27710904	T	T	27710904	3	4	138	1	0	0	0	0	1	0	0	0	8253	72	3	5	1201	5	KIAA0556	16	27710904	Missense_Mutation	SNP	A	TCGA-49-4505-01A-01D-1265-08	3128063	27710904	62643849	377	121696											
C16orf92	146378	broad.mit.edu	37	chr16	30035098	30035098	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggggacagagtctccgCgcttcttagacagacctgac	11	14	2	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30035098	T	T	30035098	3	4	138	1	0	0	0	0	1	0	0	0	1859	768	27	4	201	4	C16orf92	16	30035098	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2324194	30035098	60319655	378	121697											
RNF40	9810	broad.mit.edu	37	chr16	30776393	30776393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattggaggtgaggagccggGggctttgggggtgtgattag	21	4	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30776393	T	T	30776393	1	4	138	0	1	0	0	0	0	0	0	0	13604	1247	43	2		2	RNF40	16	30776393	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	741295	30776393	59578360	379	121698											
ITGAM	3684	broad.mit.edu	37	chr16	31283251	31283251	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccctaacccaagatcactGgtgaagccaataacgcagct	7	13	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31283251	C	C	31283251	2	2	138	1	0	0	0	0	0	0	0	1	7957	1335	47	4		4	ITGAM	16	31283251	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	506858	31283251	59071502	380	121699											
ZNF267	10308	broad.mit.edu	37	chr16	31926644	31926644	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaaagaatgtggcaaggtCtttaaccttaactgtagttt	10	5	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31926644	G	G	31926644	2	3	138	1	0	0	0	0	0	0	0	1	17932	900	32	4		4	ZNF267	16	31926644	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	643393	31926644	58428109	381	121700											
IRX6	79190	broad.mit.edu	37	chr16	55360397	55360397	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcgcgaccggagctgggCgccgccttgggcatctatgg	17	12	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55360397	A	A	55360397	2	1	138	1	0	0	0	0	0	0	0	1	7918	755	27	3		3	IRX6	16	55360397	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	23433753	55360397	34994356	382	121701											
MMP2	4313	broad.mit.edu	37	chr16	55532290	55532290	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgccccctgatgtccagCgagtggatgccgcctttaac	11	14	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55532290	T	T	55532290	4	4	138	1	0	0	0	0	0	1	0	0	9751	760	27	4	1748	4	MMP2	16	55532290	Nonsense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	171893	55532290	34822463	383	121702											
COG4	25839	broad.mit.edu	37	chr16	70517776	70517776	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaagaggtctcggaattTgttggacacggcggccaagt	14	9	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70517776	C	C	70517776	3	2	138	1	0	0	0	0	1	0	0	0	3692	1821	63	5	586	5	COG4	16	70517776	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	14985486	70517776	19836977	384	121703											
TP53	7157	broad.mit.edu	37	chr17	7577108	7577108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccggtctctcccaggaCaggcacaaacacgcacctca	9	17	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577108	A	A	7577108	3	1	138	1	0	0	0	0	1	0	0	0	16505	478	17	3	456	3	TP53	17	7577108	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08		7577108	73618102	385	121704											
MYH2	4620	broad.mit.edu	37	chr17	10426663	10426663	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactcgcctctcatgtttgcGcagacctttgacagcctcag	8	15	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10426663	C	C	10426663	3	2	138	1	0	0	0	0	1	0	0	0	10129	1087	38	4	298	4	MYH2	17	10426663	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	2849555	10426663	70768547	386	121705											
MAP2K3	5606	broad.mit.edu	37	chr17	21205695	21205695	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcatcaatgtgccccCtgaacctgggcagctgccct	12	15	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21205695	T	T	21205695	1	4	138	0	1	0	0	0	0	0	0	0	9330	696	24	4		4	MAP2K3	17	21205695	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	10779032	21205695	59989515	387	121706											
FBXO47	494188	broad.mit.edu	37	chr17	37099079	37099079	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttcaatggtgcgtccattCacagctttactagccatgaa	8	10	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37099079	A	A	37099079	2	1	138	1	0	0	0	0	0	0	0	1	5813	813	29	3		3	FBXO47	17	37099079	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	15893384	37099079	44096131	388	121707											
FBXO47	494188	broad.mit.edu	37	chr17	37111054	37111054	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagagagattggatattctAtttgttatcagttccaaagg	9	4	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37111054	C	C	37111054	1	2	138	0	1	0	0	0	0	0	0	0	5813	464	16	5		5	FBXO47	17	37111054	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	11975	37111054	44084156	389	121708											
MED1	5469	broad.mit.edu	37	chr17	37565089	37565089	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggctagaatacatactgcTacttaacttggaacttgatg	8	8	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37565089	C	C	37565089	3	2	138	1	0	0	0	0	1	0	0	0	9518	1522	53	5	1364	5	MED1	17	37565089	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	454035	37565089	43630121	390	121709											
IGF2BP1	10642	broad.mit.edu	37	chr17	47075134	47075134	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagctttacatcggcaacctCaacgagagcgtgacccccgc	9	15	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47075134	T	T	47075134	2	4	138	1	0	0	0	0	0	0	0	1	7643	813	29	4		4	IGF2BP1	17	47075134	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	9510045	47075134	34120076	391	121710											
MYST2	11143	broad.mit.edu	37	chr17	47904793	47904793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagtggatagccaaagagGccaaaaggtccaactccaat	10	9	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47904793	T	T	47904793	3	4	138	1	0	0	0	0	1	0	0	0	10197	1203	42	3	1823	3	MYST2	17	47904793	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	829659	47904793	33290417	392	121711											
MYCBPAP	84073	broad.mit.edu	37	chr17	48604672	48604673	+	Frame_Shift_Ins	INS	-	ACCACAG	ACCACAG													gatggtgctccctgatgagaINSaccacagagaggatgcgttg							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACCACAG	48604673	ACCACAG	ACCACAG	48604672	7	5	138	1	0	1	1	0	0	0	0	0	10113	246	9	0	2381	0	MYCBPAP	17	48604672	Frame_Shift_Ins	INS	-	TCGA-49-4505-01A-01D-1265-08	699879	48604672	32590538	393	121712											
CA10	56934	broad.mit.edu	37	chr17	49726662	49726662	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actgggcatcactcttgcagGacaaacatctccccgtgaca	8	14	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49726662	A	A	49726662	1	1	138	0	1	0	0	0	0	0	0	0	2537	1189	41	4		4	CA10	17	49726662	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1121990	49726662	31468548	394	121713											
KIF2B	84643	broad.mit.edu	37	chr17	51901330	51901330	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtgggaagacgtacacCatgggtggagacttttcagg	16	6	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901330	T	T	51901330	2	4	138	1	0	0	0	0	0	0	0	1	8368	581	21	4		4	KIF2B	17	51901330	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	2174668	51901330	29293880	395	121714											
DCAF7	10238	broad.mit.edu	37	chr17	61657205	61657205	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtacctcaagcattgatacGacatgcaccatctgggggct	11	11	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61657205	T	T	61657205	2	4	138	1	0	0	0	0	0	0	0	1	4308	1045	37	3		3	DCAF7	17	61657205	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	9755875	61657205	19538005	396	121715											
OTOP3	347741	broad.mit.edu	37	chr17	72937963	72937963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggagagccggttccgcgCaggtgccaacgcccgcccac	15	16	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72937963	T	T	72937963	1	4	138	0	1	0	0	0	0	0	0	0	11401	725	25	4		4	OTOP3	17	72937963	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	11280758	72937963	8257247	397	121716											
RPTOR	57521	broad.mit.edu	37	chr17	78882742	78882742	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctacaaggtacgtgccgggCgctccccaccgcgctccagc	11	19	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78882742	T	T	78882742	1	4	138	0	1	0	0	0	0	0	0	0	13776	783	27	4		4	RPTOR	17	78882742	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	5944779	78882742	2312468	398	121717											
ESCO1	114799	broad.mit.edu	37	chr18	19110322	19110322	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttacgtgctattctgtccAttaataaaattatataccag	4	7	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19110322	G	G	19110322	2	3	138	1	0	0	0	0	0	0	0	1	5290	214	8	5		5	ESCO1	18	19110322	Silent	SNP	A	TCGA-49-4505-01A-01D-1265-08		19110322	58966926	399	121718											
LAMA3	3909	broad.mit.edu	37	chr18	21426240	21426240	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctccccaggcatcaccatGagttgtttctgtctccacag	7	15	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21426240	T	T	21426240	1	4	138	0	1	0	0	0	0	0	0	0	8679	1305	45	3		3	LAMA3	18	21426240	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	2315918	21426240	56651008	400	121719											
LAMA3	3909	broad.mit.edu	37	chr18	21513860	21513860	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgttgcttaaaggttcTaccaggtttaacaagaccaa	7	8	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21513860	A	A	21513860	2	1	138	1	0	0	0	0	0	0	0	1	8679	1509	53	5		5	LAMA3	18	21513860	Silent	SNP	T	TCGA-49-4505-01A-01D-1265-08	87620	21513860	56563388	401	121720											
ZNF521	25925	broad.mit.edu	37	chr18	22932076	22932076	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagagggggcccctaaccCgcagggactcgctctgtacg	13	15	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22932076	T	T	22932076	1	4	138	0	1	0	0	0	0	0	0	0	18092	667	23	4		4	ZNF521	18	22932076	5'UTR	SNP	C	TCGA-49-4505-01A-01D-1265-08	1418216	22932076	55145172	402	121721											
DSC3	1825	broad.mit.edu	37	chr18	28574631	28574631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaaattttatacacagaGgtcagtctagtctaaaaaat	5	8	3	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28574631	T	T	28574631	1	4	138	0	1	0	0	0	0	0	0	0	4807	1015	35	2		2	DSC3	18	28574631	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	5642555	28574631	49502617	403	121722											
DSG1	1828	broad.mit.edu	37	chr18	28909825	28909825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaataaatctgtgtttcaCtgtataattatttatctttt	3	5	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28909825	A	A	28909825	1	1	138	0	1	0	0	0	0	0	0	0	4816	580	20	3		3	DSG1	18	28909825	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	335194	28909825	49167423	404	121723											
C19orf35	374872	broad.mit.edu	37	chr19	2276472	2276472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgggtggggcacgtccGccccgggcttgggcacctgc	16	17	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2276472	T	T	2276472	3	4	138	1	0	0	0	0	1	0	0	0	1939	1087	38	3	796	3	C19orf35	19	2276472	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08		2276472	56852511	405	121724											
EEF2	1938	broad.mit.edu	37	chr19	3976626	3976627	+	Missense_Mutation	DNP	CC	AA	AA													gcgcttgcgggtctccgccaCcacctggctggggcggctgc							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	3976627	AA	AA	3976626	3	1	138	1	0	0	0	0	1	0	0	0	4969	507	18	3	77	3	EEF2	19	3976626	Missense_Mutation	DNP	CC	TCGA-49-4505-01A-01D-1265-08	1700154	3976626	55152357	406	121725											
COL5A3	50509	broad.mit.edu	37	chr19	10087870	10087870	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctttcttccgctaccCaccccaccctgccccactgg	4	23	2	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10087870	G	G	10087870	1	3	138	0	1	0	0	0	0	0	0	0	3730	609	21	4		4	COL5A3	19	10087870	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	6111244	10087870	49041113	407	121726											
COL5A3	50509	broad.mit.edu	37	chr19	10089181	10089181	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggttttatcatgacaaTgtcaagcttccaagacacct	7	10	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10089181	C	C	10089181	1	2	138	0	1	0	0	0	0	0	0	0	3730	1479	51	5		5	COL5A3	19	10089181	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	1311	10089181	49039802	408	121727											
RGL3	57139	broad.mit.edu	37	chr19	11527252	11527252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgacctcttggatttcCctccccgcactcccctatct	4	19	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11527252	A	A	11527252	1	1	138	0	1	0	0	0	0	0	0	0	13386	638	22	2		2	RGL3	19	11527252	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1438071	11527252	47601731	409	121728											
ELAVL3	1995	broad.mit.edu	37	chr19	11569323	11569323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatgatgcggccgtactggGagaagagctgctccatctct	13	10	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11569323	T	T	11569323	3	4	138	1	0	0	0	0	1	0	0	0	5093	1174	41	3	682	3	ELAVL3	19	11569323	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	42071	11569323	47559660	410	121729											
ELOF1	84337	broad.mit.edu	37	chr19	11664795	11664795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccagccccctccccaccCtctggaaaaagcccaggttt	6	19	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11664795	A	A	11664795	1	1	138	0	1	0	0	0	0	0	0	0	5114	696	24	2		2	ELOF1	19	11664795	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	95472	11664795	47464188	411	121730											
GIPC1	10755	broad.mit.edu	37	chr19	14591185	14591185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagctccttgagcagcCgggccacctcgtagtgccgg	16	14	0	1	rs147512845		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14591185	A	A	14591185	3	1	138	1	0	0	0	0	1	0	0	0	6456	652	23	1	430	1	GIPC1	19	14591185	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	2926390	14591185	44537798	412	121731											
CPAMD8	27151	broad.mit.edu	37	chr19	17122243	17122243	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagtcccaagtgggtgcactCcgggcccgcggttttagaag	14	11	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17122243	A	A	17122243	1	1	138	0	1	0	0	0	0	0	0	0	3827	870	30	3		3	CPAMD8	19	17122243	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	2531058	17122243	42006740	413	121732											
UNC13A	23025	broad.mit.edu	37	chr19	17731602	17731602	+	Intron	DEL	C	-	-													tactcagtgggacttccctgCcccctcaaagcacagtctca							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17731602	-	-	17731602	6	5	138	0	1	1	0	1	0	0	0	0	17110	754	26	0		0	UNC13A	19	17731602	Intron	DEL	C	TCGA-49-4505-01A-01D-1265-08	609359	17731602	41397381	414	121733											
SIPA1L3	23094	broad.mit.edu	37	chr19	38610527	38610527	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgcagagactgaaggtaaGggagagagcccggcgatagg	18	6	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38610527	C	C	38610527	1	2	138	0	1	0	0	0	0	0	0	0	14444	1015	35	4		4	SIPA1L3	19	38610527	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	20878925	38610527	20518456	415	121734											
RYR1	6261	broad.mit.edu	37	chr19	38949877	38949877	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggacctcagcgtgccgtcCatctccttccgcatcaacgg	9	17	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38949877	G	G	38949877	2	3	138	1	0	0	0	0	0	0	0	1	13879	581	21	4		4	RYR1	19	38949877	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	339350	38949877	20179106	416	121735											
ARHGEF1	9138	broad.mit.edu	37	chr19	42399487	42399487	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctcgggaccggaatatcGgggctcctgggcaggacacc	14	14	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42399487	A	A	42399487	3	1	138	1	0	0	0	0	1	0	0	0	895	1116	39	4	1034	4	ARHGEF1	19	42399487	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	3449610	42399487	16729496	417	121736											
PSG6	5675	broad.mit.edu	37	chr19	43433884	43433884	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtctccactgtgcggaaaAcagagagaagattgccctgt	12	9	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43433884	T	T	43433884	1	4	138	0	1	0	0	0	0	0	0	0	12765	58	2	5		5	PSG6	19	43433884	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	1034397	43433884	15695099	418	121737											
PSG7	5676	broad.mit.edu	37	chr19	43441198	43441198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttccaggttatatgctGtgtgcagggaggggctgaga	15	8	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43441198	T	T	43441198	3	4	138	1	0	0	0	0	1	0	0	0	12766	1386	48	3	1252	3	PSG7	19	43441198	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	7314	43441198	15687785	419	121738											
PSG11	5680	broad.mit.edu	37	chr19	43523176	43523176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggtttaagttgctgctgGagatggagggcttgggagtc	19	4	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43523176	T	T	43523176	3	4	138	1	0	0	0	0	1	0	0	0	12760	1174	41	3	564	3	PSG11	19	43523176	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	81978	43523176	15605807	420	121739											
EHD2	30846	broad.mit.edu	37	chr19	48244176	48244176	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttcaccaagtttcactcGctgaagccgaagctgctaga	9	12	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48244176	T	T	48244176	2	4	138	1	0	0	0	0	0	0	0	1	5018	1074	38	3		3	EHD2	19	48244176	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	4721000	48244176	10884807	421	121740											
NLRP5	126206	broad.mit.edu	37	chr19	56539800	56539800	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagcactgtccgtatttgcGgaaaattcgggtggatgtca	12	9	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56539800	C	C	56539800	3	2	138	1	0	0	0	0	1	0	0	0	10575	1116	39	4	2227	4	NLRP5	19	56539800	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	8295624	56539800	2589183	422	121741											
C20orf54	113278	broad.mit.edu	37	chr20	746119	746119	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgatgctgtggtggccgtcCagcacccaggaggtcatatt	14	11	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	746119	T	T	746119	2	4	138	1	0	0	0	0	0	0	0	1	2136	581	21	4		4	C20orf54	20	746119	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08		746119	62279401	423	121742											
ANGPT4	51378	broad.mit.edu	37	chr20	854801	854801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtgagcttatgggtggGcaaggcccagacctgcaccc	14	13	0	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	854801	T	T	854801	1	4	138	0	1	0	0	0	0	0	0	0	612	1218	42	3		3	ANGPT4	20	854801	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	108682	854801	62170719	424	121743											
TMC2	117532	broad.mit.edu	37	chr20	2596749	2596749	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaacgtgcttttttttttCtctctctctctcgctccctc	3	16	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2596749	T	T	2596749	1	4	138	0	1	0	0	0	0	0	0	0	16108	928	32	4		4	TMC2	20	2596749	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1741948	2596749	60428771	425	121744											
ADRA1D	146	broad.mit.edu	37	chr20	4228878	4228878	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgataccgcagaagcgctCgtcagggggcacgggctcct	16	12	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4228878	T	T	4228878	3	4	138	1	0	0	0	0	1	0	0	0	336	893	31	4	999	4	ADRA1D	20	4228878	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	1632129	4228878	58796642	426	121745											
PLCB4	5332	broad.mit.edu	37	chr20	9457374	9457374	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacaaacagcttttgaaatCctgtcatgcagtgtcccaaa	7	10	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9457374	A	A	9457374	1	1	138	0	1	0	0	0	0	0	0	0	12125	855	30	3		3	PLCB4	20	9457374	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	5228496	9457374	53568146	427	121746											
NCOA6	23054	broad.mit.edu	37	chr20	33338167	33338167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccctgctggggctggcCttgcatgttgctgaggttca	16	10	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33338167	A	A	33338167	3	1	138	1	0	0	0	0	1	0	0	0	10328	681	24	2	4388	2	NCOA6	20	33338167	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	23880793	33338167	29687353	428	121747											
ZNF334	55713	broad.mit.edu	37	chr20	45130940	45130940	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccttgcattcgtaaggcttCtcccctgtgtgtgacctgaa	9	12	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45130940	A	A	45130940	3	1	138	1	0	0	0	0	1	0	0	0	17977	912	32	3	1008	3	ZNF334	20	45130940	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	11792773	45130940	17894580	429	121748											
FAM65C	140876	broad.mit.edu	37	chr20	49218951	49218951	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctcttcaatggaggcGtggggaccgaaggtcaaggg	16	10	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49218951	A	A	49218951	2	1	138	1	0	0	0	0	0	0	0	1	5652	1136	40	4		4	FAM65C	20	49218951	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	4088011	49218951	13806569	430	121749											
ADRM1	11047	broad.mit.edu	37	chr20	60879670	60879670	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggttgtgcctttttgttgCcctgcgattcggttaggaac	14	8	0	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60879670	T	T	60879670	1	4	138	0	1	0	0	0	0	0	0	0	345	754	26	4		4	ADRM1	20	60879670	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	11660719	60879670	2145850	431	121750											
TCFL5	10732	broad.mit.edu	37	chr20	61485231	61485231	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcattaaagagcagagcTttgctcatactggacttagt	8	7	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61485231	C	C	61485231	1	2	138	0	1	0	0	0	0	0	0	0	15821	1624	56	5		5	TCFL5	20	61485231	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	605561	61485231	1540289	432	121751											
BIRC7	79444	broad.mit.edu	37	chr20	61869975	61869976	+	Intron	DNP	TG	CA	CA													tggccccctccggtgagagcTgacaccacccctgctgactc							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	61869976	CA	CA	61869975	1	2	138	0	1	0	0	0	0	0	0	0	1445	1595	55	5		5	BIRC7	20	61869975	Intron	DNP	TG	TCGA-49-4505-01A-01D-1265-08	384744	61869975	1155545	433	121752											
ARFRP1	10139	broad.mit.edu	37	chr20	62333384	62333384	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcacccactaggcaggagCacttctgaccagacactgag	10	14	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62333384	A	A	62333384	1	1	138	0	1	0	0	0	0	0	0	0	858	725	25	3		3	ARFRP1	20	62333384	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	463409	62333384	692136	434	121753											
TPTE	7179	broad.mit.edu	37	chr21	10908867	10908867	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgcaaccagaagtaaaatGagcaattgtcatagtatgta	9	5	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10908867	T	T	10908867	4	4	138	1	0	0	0	0	0	1	0	0	16554	1294	45	3	185	3	TPTE	21	10908867	Nonsense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08		10908867	37221028	435	121754											
TPTE	7179	broad.mit.edu	37	chr21	10959674	10959674	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccttcttgcctcagcggaaGccctgtttaactaaagataa	7	11	2	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10959674	C	C	10959674	1	2	138	0	1	0	0	0	0	0	0	0	16554	986	34	4		4	TPTE	21	10959674	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	50807	10959674	37170221	436	121755											
GABPA	2551	broad.mit.edu	37	chr21	27135271	27135271	+	Intron	DEL	G	-	-													accagggcaaacccttcgccGcctccactacttttgcttgg							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27135271	-	-	27135271	6	5	138	0	1	1	0	1	0	0	0	0	6217	1102	38	0		0	GABPA	21	27135271	Intron	DEL	G	TCGA-49-4505-01A-01D-1265-08	16175597	27135271	20994624	437	121756											
CCT8	10694	broad.mit.edu	37	chr21	30435597	30435597	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttattaacagtcttcatggTctatttcgtttagtgttttc	6	6	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30435597	C	C	30435597	1	2	138	0	1	0	0	0	0	0	0	0	2990	1682	58	5		5	CCT8	21	30435597	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	3300326	30435597	17694298	438	121757											
MORC3	23515	broad.mit.edu	37	chr21	37721643	37721643	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttggagtggttggaattaTagagtgtaatttccttaagc	12	3	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37721643	C	C	37721643	3	2	138	1	0	0	0	0	1	0	0	0	9797	1406	49	5	1074	5	MORC3	21	37721643	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08	7286046	37721643	10408252	439	121758											
U2AF1	7307	broad.mit.edu	37	chr21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggtttattgtgcaaccgaGagcacctgtctccatgacga	10	11	1	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44524456	A	A	44524456	3	1	138	1	0	0	0	0	1	0	0	0	16947	942	33	4	720	4	U2AF1	21	44524456	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	6802813	44524456	3605439	440	121759											
TRPM2	7226	broad.mit.edu	37	chr21	45826051	45826051	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccccgtccctgctttgccCcttgggctcccaagaatgcc	8	18	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45826051	G	G	45826051	1	3	138	0	1	0	0	0	0	0	0	0	16711	638	22	4		4	TRPM2	21	45826051	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1301595	45826051	2303844	441	121760											
COL6A1	1291	broad.mit.edu	37	chr21	47409799	47409799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgacaggagaccacgtGtcctgcagacccgctccacc	9	18	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47409799	T	T	47409799	1	4	138	0	1	0	0	0	0	0	0	0	3731	1392	48	3		3	COL6A1	21	47409799	Intron	SNP	G	TCGA-49-4505-01A-01D-1265-08	1583748	47409799	720096	442	121761											
POTEH	23784	broad.mit.edu	37	chr22	16287281	16287281	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtccttcttgttcatgTcagtgtccttgagcatgacg	10	10	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287281	A	A	16287281	3	1	138	1	0	0	0	0	1	0	0	0	12363	1667	58	5	1072	5	POTEH	22	16287281	Missense_Mutation	SNP	T	TCGA-49-4505-01A-01D-1265-08		16287281	35017285	443	121762											
PPIL2	23759	broad.mit.edu	37	chr22	22029478	22029478	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctctcaccagttttcatAcggaatcagtcattgctttc	6	12	4	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22029478	G	G	22029478	1	3	138	0	1	0	0	0	0	0	0	0	12428	406	14	5		5	PPIL2	22	22029478	Intron	SNP	A	TCGA-49-4505-01A-01D-1265-08	5742197	22029478	29275088	444	121763											
BCR	613	broad.mit.edu	37	chr22	23630285	23630285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcttgcccaccctagaGttacacgttcctgatctcct	5	15	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23630285	T	T	23630285	3	4	138	1	0	0	0	0	1	0	0	0	1393	1043	36	3	2574	3	BCR	22	23630285	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	1600807	23630285	27674281	445	121764											
GGT5	2687	broad.mit.edu	37	chr22	24621594	24621594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgaggatgatgcctgtcCgtggtgaatacaccatcgct	12	9	0	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24621594	A	A	24621594	3	1	138	1	0	0	0	0	1	0	0	0	6426	652	23	1	523	1	GGT5	22	24621594	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	991309	24621594	26682972	446	121765											
SLC5A1	6523	broad.mit.edu	37	chr22	32439311	32439311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaccaccgcggtcaccCggcctgttgagacccacgag	11	17	1	2	rs33915717		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32439311	A	A	32439311	2	1	138	1	0	0	0	0	0	0	0	1	14775	643	23	1		1	SLC5A1	22	32439311	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	7817717	32439311	18865255	447	121766											
RASD2	23551	broad.mit.edu	37	chr22	35948123	35948123	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccagtgccttcagggagGtggccccagatgcccactgt	14	13	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35948123	T	T	35948123	1	4	138	0	1	0	0	0	0	0	0	0	13175	1276	44	3		3	RASD2	22	35948123	3'UTR	SNP	G	TCGA-49-4505-01A-01D-1265-08	3508812	35948123	15356443	448	121767											
FAM19A5	25817	broad.mit.edu	37	chr22	49103524	49103524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcctctctcttttctccCacagcaagaatcatcaagac	4	14	5	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49103524	A	A	49103524	1	1	138	0	1	0	0	0	0	0	0	0	5582	609	21	2		2	FAM19A5	22	49103524	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	13155401	49103524	2201042	449	121768											
BRD1	23774	broad.mit.edu	37	chr22	50192227	50192227	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcagactcacgggctgCgcaaatatcctggcggggtc	12	13	2	1	rs149829026		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50192227	G	G	50192227	2	3	138	1	0	0	0	0	0	0	0	1	1510	755	27	4		4	BRD1	22	50192227	Silent	SNP	C	TCGA-49-4505-01A-01D-1265-08	1088703	50192227	1112339	450	121769											
ARSF	416	broad.mit.edu	37	chrX	3028249	3028249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttcttttccactactGtggctcctacctgcacgccg	7	14	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3028249	T	T	3028249	3	4	138	1	0	0	0	0	1	0	0	0	995	1377	48	3	1380	3	ARSF	23	3028249	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08		3028249	152242311	451	121770											
MAP7D2	256714	broad.mit.edu	37	chrX	20034374	20034374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcctttcttcttcctgCtttcgggcttcctcttctag	6	15	4	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20034374	A	A	20034374	3	1	138	1	0	0	0	0	1	0	0	0	9360	796	28	3	863	3	MAP7D2	23	20034374	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	17006125	20034374	135236186	452	121771											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29973557	29973557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaacccattacacatgagCaggctttagatgtcagtgag	10	8	1	4			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29973557	A	A	29973557	3	1	138	1	0	0	0	0	1	0	0	0	7731	711	25	3	1749	3	IL1RAPL1	23	29973557	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	9939183	29973557	125297003	453	121772											
FAM47B	170062	broad.mit.edu	37	chrX	34961522	34961522	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggaatcctgcccgcggcctCccgagactccggtgtcccgt	13	17	0	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34961522	G	G	34961522	3	3	138	1	0	0	0	0	1	0	0	0	5621	855	30	4	576	4	FAM47B	23	34961522	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	4987965	34961522	120309038	454	121773											
CYBB	1536	broad.mit.edu	37	chrX	37663315	37663315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccgcatcgttggggactgGacagaggggctgttcaatgc	15	9	1	1			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37663315	T	T	37663315	3	4	138	1	0	0	0	0	1	0	0	0	4166	1183	41	3	1117	3	CYBB	23	37663315	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	2701793	37663315	117607245	455	121774											
SLC38A5	92745	broad.mit.edu	37	chrX	48319027	48319027	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccctctcagccgtgggccCcacgcacagggaacagcacg	12	17	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48319027	G	G	48319027	1	3	138	0	1	0	0	0	0	0	0	0	14721	638	22	4		4	SLC38A5	23	48319027	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	10655712	48319027	106951533	456	121775											
RPS6KA6	27330	broad.mit.edu	37	chrX	83419407	83419407	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatttacctgaaaaacatTgttcaaaaattgaggttcaa	5	7	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83419407	G	G	83419407	1	3	138	0	1	0	0	0	0	0	0	0	13766	1827	63	5		5	RPS6KA6	23	83419407	Intron	SNP	T	TCGA-49-4505-01A-01D-1265-08	35100380	83419407	71851153	457	121776											
PCDH11X	27328	broad.mit.edu	37	chrX	91134201	91134201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcctcaagcagttcagatCcctacagcgtttctgactgt	8	12	3	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91134201	A	A	91134201	3	1	138	1	0	0	0	0	1	0	0	0	11602	855	30	3	2968	3	PCDH11X	23	91134201	Missense_Mutation	SNP	C	TCGA-49-4505-01A-01D-1265-08	7714794	91134201	64136359	458	121777											
PCDH11X	27328	broad.mit.edu	37	chrX	91368333	91368333	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcctcttgtcttcttctgtCaccatgttaatagccacatc	5	13	5	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91368333	A	A	91368333	1	1	138	0	1	0	0	0	0	0	0	0	11602	841	29	3		3	PCDH11X	23	91368333	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	234132	91368333	63902227	459	121778											
NXF5	55998	broad.mit.edu	37	chrX	101095868	101095868	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagttcaaagacaacagCtttgggtcaagaagagttag	10	7	2	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101095868	A	A	101095868	5	1	138	1	0	0	0	0	0	0	1	0	10881	811	28	3	649	3	NXF5	23	101095868	Splice_Site	SNP	C	TCGA-49-4505-01A-01D-1265-08	9727535	101095868	54174692	460	121779											
TMEM164	84187	broad.mit.edu	37	chrX	109414443	109414473	+	Intron	DEL	GAAATAAGTGGCAGGACAGAGGGCAGGAAGG	-	-													ctctctttgtagtgaccctaGaaataagtggcaggacagag							TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109414473	-	-	109414443	6	5	138	0	1	1	0	1	0	0	0	0	16202	957	33	0		0	TMEM164	23	109414443	Intron	DEL	GAAATAAGTGGCAGGACAGAGGGCAGGAAGG	TCGA-49-4505-01A-01D-1265-08	8318575	109414443	45856117	461	121780											
CAPN6	827	broad.mit.edu	37	chrX	110492073	110492073	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgctctgtcttttttatccCtaggccttccattcttcccc	4	15	3	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110492073	G	G	110492073	1	3	138	0	1	0	0	0	0	0	0	0	2656	696	24	4		4	CAPN6	23	110492073	Intron	SNP	C	TCGA-49-4505-01A-01D-1265-08	1077630	110492073	44778487	462	121781											
GPR112	139378	broad.mit.edu	37	chrX	135482182	135482182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttcttttacttggatgGgcctggaggcagtccacatg	12	8	1	0			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135482182	T	T	135482182	3	4	138	1	0	0	0	0	1	0	0	0	6694	1232	43	2	8552	2	GPR112	23	135482182	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	24990109	135482182	19788378	463	121782											
HTATSF1	27336	broad.mit.edu	37	chrX	135593999	135593999	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgacgaaaagttgttcgaaGatgatgattccaatgagaag	11	5	0	5			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135593999	T	T	135593999	3	4	138	1	0	0	0	0	1	0	0	0	7503	942	33	3	2129	3	HTATSF1	23	135593999	Missense_Mutation	SNP	G	TCGA-49-4505-01A-01D-1265-08	111817	135593999	19676561	464	121783											
AFF2	2334	broad.mit.edu	37	chrX	148048526	148048526	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggatagcagtcacctGgagatgacgtcctgggcggc	14	11	2	2			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148048526	A	A	148048526	2	1	138	1	0	0	0	0	0	0	0	1	357	1335	47	4		4	AFF2	23	148048526	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	12454527	148048526	7222034	465	121784											
VBP1	7411	broad.mit.edu	37	chrX	154464554	154464554	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgatgaagctcaggcattGttggaaaagaatttatcgac	10	5	1	3			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154464554	A	A	154464554	2	1	138	1	0	0	0	0	0	0	0	1	17263	1368	48	4		4	VBP1	23	154464554	Silent	SNP	G	TCGA-49-4505-01A-01D-1265-08	6416028	154464554	806006	466	121785											
RPL22	6146	broad.mit.edu	37	chr1	6257676	6257676	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caacagtatctcaaaatgttCgtgaccacccgagtggcaat	8	11	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6257676	T	T	6257676	1	4	139	0	1	0	0	0	0	0	0	0	13679	899	31	4		4	RPL22	1	6257676	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08		6257676	242992945	1	121786											
RERE	473	broad.mit.edu	37	chr1	8416143	8416143	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacggcctccccgcccctccTggaggggaagtcttaccgaa	11	17	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8416143	A	A	8416143	1	1	139	0	1	0	0	0	0	0	0	0	13339	1595	55	5		5	RERE	1	8416143	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	2158467	8416143	240834478	2	121787											
CLCN6	1185	broad.mit.edu	37	chr1	11884619	11884619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctccctcaggtaagatgGgctgagagggtgtgggcctc	17	10	1	2	rs41275474	by1000genomes	TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11884619	T	T	11884619	1	4	139	0	1	0	0	0	0	0	0	0	3498	1247	43	2		2	CLCN6	1	11884619	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	3468476	11884619	237366002	3	121788											
CLCN6	1185	broad.mit.edu	37	chr1	11896114	11896114	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcatcctgcgcaccacGgtccaccatgccttcccggt	10	17	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11896114	A	A	11896114	2	1	139	1	0	0	0	0	0	0	0	1	3498	1103	39	4		4	CLCN6	1	11896114	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	11495	11896114	237354507	4	121789											
SNRNP40	9410	broad.mit.edu	37	chr1	31762322	31762322	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaagataaacagtaacaatCtatctttcctacttgacaaa	4	8	2	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31762322	A	A	31762322	1	1	139	0	1	0	0	0	0	0	0	0	14970	928	32	3		3	SNRNP40	1	31762322	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	19866208	31762322	217488299	5	121790											
GRIK3	2899	broad.mit.edu	37	chr1	37285273	37285273	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggctctgctgatgccaaaGaggctgaagaccgcttgggg	15	10	1	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37285273	A	A	37285273	1	1	139	0	1	0	0	0	0	0	0	0	6841	957	33	4		4	GRIK3	1	37285273	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	5522951	37285273	211965348	6	121791											
HPCAL4	51440	broad.mit.edu	37	chr1	40149725	40149725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggaggtgaccgacagggCgcagatgaactcccggaagt	17	10	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40149725	A	A	40149725	3	1	139	1	0	0	0	0	1	0	0	0	7398	768	27	3	321	3	HPCAL4	1	40149725	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	2864452	40149725	209100896	7	121792											
CTPS	1503	broad.mit.edu	37	chr1	41471682	41471682	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaaactattaatcactttCgtttgtaactattttcataa	3	6	2	1	rs150606206	by1000genomes	TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41471682	T	T	41471682	1	4	139	0	1	0	0	0	0	0	0	0	4056	899	31	4		4	CTPS	1	41471682	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	1321957	41471682	207778939	8	121793											
WDR78	79819	broad.mit.edu	37	chr1	67356695	67356695	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaaatagatattccccTggtaattctcttgaagcgac	6	8	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67356695	C	C	67356695	1	2	139	0	1	0	0	0	0	0	0	0	17455	1595	55	5		5	WDR78	1	67356695	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	25885013	67356695	181893926	9	121794											
C1orf173	127254	broad.mit.edu	37	chr1	75065513	75065513	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattatcttttttatcatccAaaggtgactgcggtattcca	6	8	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75065513	G	G	75065513	3	3	139	1	0	0	0	0	1	0	0	0	2034	131	5	5	3016	5	C1orf173	1	75065513	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	7708818	75065513	174185108	10	121795											
ABCA4	24	broad.mit.edu	37	chr1	94463321	94463321	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagagtttgttaaaaatcGggaatgttatgcctccctct	9	8	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94463321	T	T	94463321	1	4	139	0	1	0	0	0	0	0	0	0	34	1131	39	1		1	ABCA4	1	94463321	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	19397808	94463321	154787300	11	121796											
S1PR1	1901	broad.mit.edu	37	chr1	101705215	101705215	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgtactgcagaatctaCtccttggtcaggactcggag	10	10	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101705215	A	A	101705215	4	1	139	1	0	0	0	0	0	1	0	0	13904	576	20	3	677	3	S1PR1	1	101705215	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	7241894	101705215	147545406	12	121797											
C1orf54	79630	broad.mit.edu	37	chr1	150252215	150252215	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattttttaacttcccacacTaaaccgaagtaattcttacc	2	11	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150252215	A	A	150252215	1	1	139	0	1	0	0	0	0	0	0	0	2068	1537	53	5		5	C1orf54	1	150252215	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	48547000	150252215	98998406	13	121798											
PRPF3	9129	broad.mit.edu	37	chr1	150297583	150297584	+	Intron	DNP	GG	AT	AT													tcttttatcttaacatatagGgtgaccccaaacactgcttt							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	150297584	AT	AT	150297583	1	1	139	0	1	0	0	0	0	0	0	0	12671	1247	43	4		4	PRPF3	1	150297583	Intron	DNP	GG	TCGA-49-4506-01A-01D-1265-08	45368	150297583	98953038	14	121799											
LCE1F	353137	broad.mit.edu	37	chr1	152748899	152748899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccccctcccaagtgcactCccaagtgccctcccaagtgc	7	20	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152748899	A	A	152748899	3	1	139	1	0	0	0	0	1	0	0	0	8736	855	30	3	54	3	LCE1F	1	152748899	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	2451316	152748899	96501722	15	121800											
LCE1F	353137	broad.mit.edu	37	chr1	152749165	152749165	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcgggctccagctgctgCggagggggcagtggccagca	18	12	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152749165	T	T	152749165	2	4	139	1	0	0	0	0	0	0	0	1	8736	776	27	4		4	LCE1F	1	152749165	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	266	152749165	96501456	16	121801											
HCN3	57657	broad.mit.edu	37	chr1	155257693	155257693	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcggggtgttcggggtcgGgccccgagcacaggagctca	18	12	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155257693	T	T	155257693	2	4	139	1	0	0	0	0	0	0	0	1	7064	1219	43	2		2	HCN3	1	155257693	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	2508528	155257693	93992928	17	121802											
ASH1L	55870	broad.mit.edu	37	chr1	155408569	155408569	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacacttctcttgatatgatGgggggaacagctgcttgtca	11	8	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155408569	A	A	155408569	3	1	139	1	0	0	0	0	1	0	0	0	1045	1348	47	4	3613	4	ASH1L	1	155408569	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	150876	155408569	93842052	18	121803											
UBQLN4	56893	broad.mit.edu	37	chr1	156020169	156020169	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctgggggttggccataatCatgtgacgcatcagatcagg	13	8	4	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156020169	T	T	156020169	3	4	139	1	0	0	0	0	1	0	0	0	17025	826	29	4	1183	4	UBQLN4	1	156020169	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	611600	156020169	93230452	19	121804											
FCRL1	115350	broad.mit.edu	37	chr1	157771089	157771089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaccaaaaatgttacactGtattaataggcactgttcct	5	8	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157771089	T	T	157771089	1	4	139	0	1	0	0	0	0	0	0	0	5851	1392	48	3		3	FCRL1	1	157771089	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	1750920	157771089	91479532	20	121805											
SPTA1	6708	broad.mit.edu	37	chr1	158632684	158632684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatccttagaatcaggatGgcctatttcttcaaaatatg	6	7	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158632684	T	T	158632684	3	4	139	1	0	0	0	0	1	0	0	0	15234	1348	47	2	5131	2	SPTA1	1	158632684	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	861595	158632684	90617937	21	121806											
SPTA1	6708	broad.mit.edu	37	chr1	158636276	158636276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgctggttggcctcatGcaactgggtccctgggagaa	14	11	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158636276	T	T	158636276	3	4	139	1	0	0	0	0	1	0	0	0	15234	1319	46	3	5357	3	SPTA1	1	158636276	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	3592	158636276	90614345	22	121807											
FCGR2A	2212	broad.mit.edu	37	chr1	161483864	161483864	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaagccacccaggccttaGaaatagccttatcattgctt	6	12	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161483864	C	C	161483864	1	2	139	0	1	0	0	0	0	0	0	0	5838	957	33	4		4	FCGR2A	1	161483864	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	2847588	161483864	87766757	23	121808											
FMO1	2326	broad.mit.edu	37	chr1	171244687	171244687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactttaagttttctcgtgGgagccattctgatgcttgat	9	7	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171244687	T	T	171244687	1	4	139	0	1	0	0	0	0	0	0	0	6012	1247	43	2		2	FMO1	1	171244687	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	9760823	171244687	78005934	24	121809											
BAT2L2	23215	broad.mit.edu	37	chr1	171504603	171504603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactagacaagacagcaatcGcagtgaaaaggaagccacac	9	11	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171504603	T	T	171504603	3	4	139	1	0	0	0	0	1	0	0	0	1326	1087	38	3	1950	3	BAT2L2	1	171504603	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	259916	171504603	77746018	25	121810											
SEC16B	89866	broad.mit.edu	37	chr1	177930770	177930770	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagctgggggatcatcccGctccggggcatctctgatgt	14	11	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177930770	A	A	177930770	3	1	139	1	0	0	0	0	1	0	0	0	14100	1086	38	4	2524	4	SEC16B	1	177930770	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	6426167	177930770	71319851	26	121811											
FAM20B	9917	broad.mit.edu	37	chr1	179019568	179019568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttcttggagaggactcGtggactccttcagaaggatg	12	8	3	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179019568	T	T	179019568	1	4	139	0	1	0	0	0	0	0	0	0	5585	1160	40	3		3	FAM20B	1	179019568	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	1088798	179019568	70231053	27	121812											
TDRD5	163589	broad.mit.edu	37	chr1	179604812	179604812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacttatagcaagtagaaaCaaacaaatcagagctcaact	5	8	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179604812	A	A	179604812	3	1	139	1	0	0	0	0	1	0	0	0	15855	478	17	3	1340	3	TDRD5	1	179604812	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	585244	179604812	69645809	28	121813											
SMG7	9887	broad.mit.edu	37	chr1	183485280	183485280	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgatatttggccattgGtattatttcaaatacagtct	7	5	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183485280	C	C	183485280	1	2	139	0	1	0	0	0	0	0	0	0	14912	1276	44	4		4	SMG7	1	183485280	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	3880468	183485280	65765341	29	121814											
F13B	2165	broad.mit.edu	37	chr1	197008683	197008683	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatgatcttacttagtaaAtaataccaccagttcccttt	3	9	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197008683	T	T	197008683	1	4	139	0	1	0	0	0	0	0	0	0	5384	116	4	5		5	F13B	1	197008683	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	13523403	197008683	52241938	30	121815											
CHI3L1	1116	broad.mit.edu	37	chr1	203151801	203151801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctagggctgggggtggcGgggaaacaggagtgttggca	22	5	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203151801	T	T	203151801	1	4	139	0	1	0	0	0	0	0	0	0	3371	1131	39	1		1	CHI3L1	1	203151801	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	6143118	203151801	46098820	31	121816											
NFASC	23114	broad.mit.edu	37	chr1	204937421	204937421	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagcttcatgtatccccagGgcaccgcgagcagccagatg	11	14	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204937421	A	A	204937421	3	1	139	1	0	0	0	0	1	0	0	0	10454	1232	43	4	832	4	NFASC	1	204937421	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	1785620	204937421	44313200	32	121817											
CR1L	1379	broad.mit.edu	37	chr1	207857311	207857311	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttgtgacagtgagttgAaatatgcattcctatttctt	8	6	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207857311	C	C	207857311	1	2	139	0	1	0	0	0	0	0	0	0	3873	261	9	5		5	CR1L	1	207857311	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	2919890	207857311	41393310	33	121818											
OBSCN	84033	broad.mit.edu	37	chr1	228481317	228481317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccatgctcaccgtcaggGgtaaaggccacatgcagcca	11	14	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228481317	T	T	228481317	3	4	139	1	0	0	0	0	1	0	0	0	10907	1246	43	2	11289	2	OBSCN	1	228481317	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	20624006	228481317	20769304	34	121819											
RYR2	6262	broad.mit.edu	37	chr1	237774102	237774102	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggattattcaagagtgagcAcaagaaccccgtgccgcagt	12	10	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237774102	G	G	237774102	3	3	139	1	0	0	0	0	1	0	0	0	13880	159	6	5	4866	5	RYR2	1	237774102	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	9292785	237774102	11476519	35	121820											
PLD5	200150	broad.mit.edu	37	chr1	242264084	242264084	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttccagatcaaaaaattTctgtaagaaaaaaaaaaagg	5	5	3	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242264084	A	A	242264084	4	1	139	1	0	0	0	0	0	1	0	0	12144	1797	62	5	378	5	PLD5	1	242264084	Nonsense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	4489982	242264084	6986537	36	121821											
AHCTF1	25909	broad.mit.edu	37	chr1	247068974	247068974	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatatctgaaacaaattagTatatttcatatttttaagtt	3	3	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247068974	C	C	247068974	1	2	139	0	1	0	0	0	0	0	0	0	408	1653	57	5		5	AHCTF1	1	247068974	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	4804890	247068974	2181647	37	121822											
ZNF496	84838	broad.mit.edu	37	chr1	247473792	247473792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacagggatgcctcagtcCgggacgagctaggtgtctca	14	10	2	1	rs141847898	by1000genomes	TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247473792	A	A	247473792	1	1	139	0	1	0	0	0	0	0	0	0	18072	667	23	1		1	ZNF496	1	247473792	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	404818	247473792	1776829	38	121823											
OR2T8	343172	broad.mit.edu	37	chr1	248084381	248084381	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctttaaccacaccagagCccaccaagtcctcttcatga	4	16	3	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248084381	T	T	248084381	3	4	139	1	0	0	0	0	1	0	0	0	11124	739	26	4	64	4	OR2T8	1	248084381	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	610589	248084381	1166240	39	121824											
GREB1	9687	broad.mit.edu	37	chr2	11740993	11740993	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggaccgattgctcaacTgcagggaggtgaaggaggcc	17	8	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11740993	C	C	11740993	3	2	139	1	0	0	0	0	1	0	0	0	6826	1580	55	5	2567	5	GREB1	2	11740993	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08		11740993	231458380	40	121825											
EMILIN1	11117	broad.mit.edu	37	chr2	27303226	27303226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagggagtctgtatgaagCagggagcaagggcaggacag	17	7	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27303226	A	A	27303226	1	1	139	0	1	0	0	0	0	0	0	0	5135	725	25	3		3	EMILIN1	2	27303226	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	15562233	27303226	215896147	41	121826											
GALNT14	79623	broad.mit.edu	37	chr2	31147016	31147016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttcgcctttgaccttgGcacaggggctcaactttagg	10	12	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31147016	T	T	31147016	3	4	139	1	0	0	0	0	1	0	0	0	6274	1203	42	3	321	3	GALNT14	2	31147016	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	3843790	31147016	212052357	42	121827											
FAM82A1	151393	broad.mit.edu	37	chr2	38294176	38294176	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaccgcaagccctgtcatcTgtgagtgtggcacagtgaag	13	10	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38294176	A	A	38294176	1	1	139	0	1	0	0	0	0	0	0	0	5683	1595	55	5		5	FAM82A1	2	38294176	3'UTR	SNP	T	TCGA-49-4506-01A-01D-1265-08	7147160	38294176	204905197	43	121828											
UGP2	7360	broad.mit.edu	37	chr2	64113050	64113050	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaggaagcagtttagggcTtcatgttttcacatttcgta	11	6	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64113050	C	C	64113050	1	2	139	0	1	0	0	0	0	0	0	0	17069	1624	56	5		5	UGP2	2	64113050	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	25818874	64113050	179086323	44	121829											
ACTR2	10097	broad.mit.edu	37	chr2	65473856	65473859	+	Frame_Shift_Del	DEL	AGAG	-	-													ctatgaacccaaccaaaaacAgagagaagattgtagaggtg							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65473859	-	-	65473856	7	5	139	1	0	1	0	1	0	0	0	0	211	180	7	0	387	0	ACTR2	2	65473856	Frame_Shift_Del	DEL	AGAG	TCGA-49-4506-01A-01D-1265-08	1360806	65473856	177725517	45	121830											
REG3A	5068	broad.mit.edu	37	chr2	79385599	79385599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggccagctttgagggCaacaaagagaatgagaggga	16	6	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79385599	A	A	79385599	1	1	139	0	1	0	0	0	0	0	0	0	13320	725	25	3		3	REG3A	2	79385599	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	13911743	79385599	163813774	46	121831											
RETSAT	54884	broad.mit.edu	37	chr2	85578150	85578150	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgtaatggattcctgttGggagatggaaaaacaaggta	12	4	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85578150	A	A	85578150	1	1	139	0	1	0	0	0	0	0	0	0	13346	1363	47	4		4	RETSAT	2	85578150	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	6192551	85578150	157621223	47	121832											
TEKT4	150483	broad.mit.edu	37	chr2	95537412	95537412	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctacacgtcctccggcctgGccaccgccagcttccgcacc	8	22	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95537412	A	A	95537412	3	1	139	1	0	0	0	0	1	0	0	0	15877	1203	42	4	90	4	TEKT4	2	95537412	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	9959262	95537412	147661961	48	121833											
IL1RL1	9173	broad.mit.edu	37	chr2	102956626	102956627	+	Missense_Mutation	DNP	CA	AG	AG													acaatcagattgcaatgttcCagattatttgatgtattcaa							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	102956627	AG	AG	102956626	3	1	139	1	0	0	0	0	1	0	0	0	7733	594	21	2	351	2	IL1RL1	2	102956626	Missense_Mutation	DNP	CA	TCGA-49-4506-01A-01D-1265-08	7419214	102956626	140242747	49	121834											
DPP10	57628	broad.mit.edu	37	chr2	116066913	116066913	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcactcatcactatgtcagtCatcctcttaaccccaggtaa	4	14	6	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116066913	A	A	116066913	2	1	139	1	0	0	0	0	0	0	0	1	4767	813	29	3		3	DPP10	2	116066913	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	13110287	116066913	127132460	50	121835											
MKI67IP	84365	broad.mit.edu	37	chr2	122488515	122488515	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttttagctaatttcttcCtgagtaatctttctttcttt	3	8	4	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122488515	G	G	122488515	3	3	139	1	0	0	0	0	1	0	0	0	9692	681	24	4	379	4	MKI67IP	2	122488515	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	6421602	122488515	120710858	51	121836											
TUBA3E	112714	broad.mit.edu	37	chr2	130953906	130953906	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcaggcattgccgatctgGacacccgcctgccccacgtg	11	17	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130953906	T	T	130953906	2	4	139	1	0	0	0	0	0	0	0	1	16874	1161	41	3		3	TUBA3E	2	130953906	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	8465391	130953906	112245467	52	121837											
ARHGEF4	50649	broad.mit.edu	37	chr2	131703933	131703933	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcttgtgagttttgatgtGaaaggcatcccctggagctg	12	7	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131703933	C	C	131703933	1	2	139	0	1	0	0	0	0	0	0	0	910	1305	45	4		4	ARHGEF4	2	131703933	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	750027	131703933	111495440	53	121838											
CCDC74A	90557	broad.mit.edu	37	chr2	132288316	132288316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcgtgggcgtcttgcgGgcggtagcgccgacactgtg	18	11	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132288316	T	T	132288316	3	4	139	1	0	0	0	0	1	0	0	0	2875	1232	43	2	470	2	CCDC74A	2	132288316	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	584383	132288316	110911057	54	121839											
NCKAP5	344148	broad.mit.edu	37	chr2	133486443	133486443	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggaagcggctggcttgcCattgggtcttcagcatatcc	12	11	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133486443	T	T	133486443	3	4	139	1	0	0	0	0	1	0	0	0	10318	594	21	4	215	4	NCKAP5	2	133486443	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	1198127	133486443	109712930	55	121840											
LRP1B	53353	broad.mit.edu	37	chr2	141625676	141625676	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattttttaaacctggcgtcTgtccacactatccttttctc	5	12	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141625676	A	A	141625676	2	1	139	1	0	0	0	0	0	0	0	1	9042	1567	55	5		5	LRP1B	2	141625676	Silent	SNP	T	TCGA-49-4506-01A-01D-1265-08	8139233	141625676	101573697	56	121841											
HOXD8	3234	broad.mit.edu	37	chr2	176995521	176995521	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacggatacgataacttaCagagacagccgatttttacg	8	8	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176995521	A	A	176995521	3	1	139	1	0	0	0	0	1	0	0	0	7392	479	17	3	429	3	HOXD8	2	176995521	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	35369845	176995521	66203852	57	121842											
TTN	7273	broad.mit.edu	37	chr2	179398651	179398651	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagtaatagtcatagacttCtctcacacctttaacaaata	4	10	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179398651	T	T	179398651	3	4	139	1	0	0	0	0	1	0	0	0	16861	922	32	4	5308	4	TTN	2	179398651	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	2403130	179398651	63800722	58	121843											
ZNF804A	91752	broad.mit.edu	37	chr2	185731221	185731221	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaatcacattaattcataTgaccatgctcacaagcaggt	6	10	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185731221	A	A	185731221	4	1	139	1	0	0	0	0	0	1	0	0	18299	1471	51	5	243	5	ZNF804A	2	185731221	Nonsense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	6332570	185731221	57468152	59	121844											
COL3A1	1281	broad.mit.edu	37	chr2	189849926	189849926	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttttccatttattagcctActcgccctcctaatggtcaa	4	13	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189849926	T	T	189849926	3	4	139	1	0	0	0	0	1	0	0	0	3720	391	14	5	296	5	COL3A1	2	189849926	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	4118705	189849926	53349447	60	121845											
HIBCH	26275	broad.mit.edu	37	chr2	191125988	191125988	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggcaaaaaaagaggcGggggggaattaaacatattg	13	3	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191125988	A	A	191125988	1	1	139	0	1	0	0	0	0	0	0	0	7167	1131	39	4		4	HIBCH	2	191125988	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	1276062	191125988	52073385	61	121846											
PIKFYVE	200576	broad.mit.edu	37	chr2	209214631	209214631	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttgatagtgacttgagtagGatatttttacttttaatttg	8	3	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209214631	C	C	209214631	1	2	139	0	1	0	0	0	0	0	0	0	12019	1189	41	4		4	PIKFYVE	2	209214631	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	18088643	209214631	33984742	62	121847											
CPS1	1373	broad.mit.edu	37	chr2	211542011	211542011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatctaaaataatgatgctAacatggtaggtcatggctta	8	5	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211542011	T	T	211542011	1	4	139	0	1	0	0	0	0	0	0	0	3855	377	13	5		5	CPS1	2	211542011	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	2327380	211542011	31657362	63	121848											
IRS1	3667	broad.mit.edu	37	chr2	227660594	227660594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaccccagtgctctcctgcCaggctgccctccggcccggc	11	21	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227660594	A	A	227660594	3	1	139	1	0	0	0	0	1	0	0	0	7910	595	21	2	871	2	IRS1	2	227660594	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	16118583	227660594	15538779	64	121849											
COL6A3	1293	broad.mit.edu	37	chr2	238255341	238255341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaaaaatctctcactttaaGggagctaaaatgtctcttaa	6	8	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238255341	A	A	238255341	1	1	139	0	1	0	0	0	0	0	0	0	3733	1015	35	4		4	COL6A3	2	238255341	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	10594747	238255341	4944032	65	121850											
ANO7	50636	broad.mit.edu	37	chr2	242142800	242142800	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctccacgcctcaaccagcGccaagtccttttccagcact	7	18	1	0	rs150246596		TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242142800	A	A	242142800	3	1	139	1	0	0	0	0	1	0	0	0	702	1087	38	4	1044	4	ANO7	2	242142800	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	3887459	242142800	1056573	66	121851											
CPNE9	151835	broad.mit.edu	37	chr3	9754616	9754616	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggattcagtcctaccccGggcacgagataaattatacc	8	12	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9754616	A	A	9754616	1	1	139	0	1	0	0	0	0	0	0	0	3851	1131	39	4		4	CPNE9	3	9754616	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08		9754616	188267814	67	121852											
TATDN2	9797	broad.mit.edu	37	chr3	10320619	10320619	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcctggccttgcatacGgtccgagagattgccagagt	14	12	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10320619	A	A	10320619	2	1	139	1	0	0	0	0	0	0	0	1	15711	1103	39	4		4	TATDN2	3	10320619	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	566003	10320619	187701811	68	121853											
CAND2	23066	broad.mit.edu	37	chr3	12857277	12857277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgccgacatcctccctggGgatgtgtctggcaaagcctc	12	13	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12857277	T	T	12857277	1	4	139	0	1	0	0	0	0	0	0	0	2642	1247	43	2		2	CAND2	3	12857277	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	2536658	12857277	185165153	69	121854											
C3orf20	84077	broad.mit.edu	37	chr3	14731389	14731389	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttttgtaacaatgcggcActttacagtatgtgacccac	9	9	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14731389	C	C	14731389	1	2	139	0	1	0	0	0	0	0	0	0	2235	174	6	5		5	C3orf20	3	14731389	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	1874112	14731389	183291041	70	121855											
BAP1	8314	broad.mit.edu	37	chr3	52437180	52437181	+	Missense_Mutation	DNP	AG	TA	TA													tgagtatttctccccactcaAgggctcgccaggcctcacca							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	52437181	TA	TA	52437180	3	4	139	1	0	0	0	0	1	0	0	0	1316	69	3	5	341	5	BAP1	3	52437180	Missense_Mutation	DNP	AG	TCGA-49-4506-01A-01D-1265-08	37705791	52437180	145585250	71	121856											
ADAMTS9	56999	broad.mit.edu	37	chr3	64589670	64589670	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctttgccactggtctaggCagggtagcacaggcactctc	11	13	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64589670	G	G	64589670	2	3	139	1	0	0	0	0	0	0	0	1	273	697	25	4		4	ADAMTS9	3	64589670	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	12152490	64589670	133432760	72	121857											
OR5H6	79295	broad.mit.edu	37	chr3	97983253	97983253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacctgactgtaaaatacCgctcttcctggcattcttgg	7	12	3	1	rs36040433	byFrequency	TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97983253	A	A	97983253	3	1	139	1	0	0	0	0	1	0	0	0	11257	652	23	1	127	1	OR5H6	3	97983253	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	33393583	97983253	100039177	73	121858											
CEP97	79598	broad.mit.edu	37	chr3	101481446	101481446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctcatatatgatcaaatAcagattctatattcattgag	4	7	4	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101481446	G	G	101481446	1	3	139	0	1	0	0	0	0	0	0	0	3293	406	14	5		5	CEP97	3	101481446	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	3498193	101481446	96540984	74	121859											
SEC22A	26984	broad.mit.edu	37	chr3	122942517	122942517	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggagttcattactacttaTaacatgatgaagacaaatac	6	6	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122942517	G	G	122942517	4	3	139	1	0	0	0	0	0	1	0	0	14101	1413	49	5	300	5	SEC22A	3	122942517	Nonsense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	21461071	122942517	75079913	75	121860											
LRRC15	131578	broad.mit.edu	37	chr3	194081021	194081021	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgtggttgttggacaggTagagtctctggaggttgtgg	18	3	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194081021	A	A	194081021	3	1	139	1	0	0	0	0	1	0	0	0	9057	1638	57	5	997	5	LRRC15	3	194081021	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	71138504	194081021	3941409	76	121861											
MFSD7	84179	broad.mit.edu	37	chr4	677315	677315	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agacagtccagacctctgttCcagccaagccgccaaccgcc	8	18	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	677315	A	A	677315	1	1	139	0	1	0	0	0	0	0	0	0	9630	870	30	3		3	MFSD7	4	677315	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08		677315	190476961	77	121862											
KIAA0232	9778	broad.mit.edu	37	chr4	6860175	6860175	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagattcacaaaaagttaGaggggtctccctctccagag	10	9	3	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6860175	T	T	6860175	4	4	139	1	0	0	0	0	0	1	0	0	8233	943	33	3	474	3	KIAA0232	4	6860175	Nonsense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	6182860	6860175	184294101	78	121863											
PCDH7	5099	broad.mit.edu	37	chr4	31143862	31143862	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcatctacacacttaaaTgtatcattttgtctactttc	3	9	4	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31143862	C	C	31143862	1	2	139	0	1	0	0	0	0	0	0	0	11610	1479	51	5		5	PCDH7	4	31143862	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	24283687	31143862	160010414	79	121864											
FRYL	285527	broad.mit.edu	37	chr4	48608699	48608699	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatatttaagggtaaaaatCaaaaggtatgctacctaaat	7	4	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48608699	A	A	48608699	1	1	139	0	1	0	0	0	0	0	0	0	6124	841	29	3		3	FRYL	4	48608699	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	17464837	48608699	142545577	80	121865											
KIT	3815	broad.mit.edu	37	chr4	55569902	55569902	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accagcagactaaactacagGagaaatataatagctggcat	8	8	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55569902	C	C	55569902	3	2	139	1	0	0	0	0	1	0	0	0	8400	1175	41	4	787	4	KIT	4	55569902	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	6961203	55569902	135584374	81	121866											
KIT	3815	broad.mit.edu	37	chr4	55595481	55595482	+	Intron	INS	-	T	T													atctcaccttctttctaaccINSttttcttatgtgcttttagg							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55595482	T	T	55595481	6	5	139	0	1	1	1	0	0	0	0	0	8400	696	24	0		0	KIT	4	55595481	Intron	INS	-	TCGA-49-4506-01A-01D-1265-08	25579	55595481	135558795	82	121867											
LPHN3	23284	broad.mit.edu	37	chr4	62903631	62903631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactataccagttactgtcCcttatgattggagctaattt	6	8	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62903631	A	A	62903631	1	1	139	0	1	0	0	0	0	0	0	0	9004	638	22	2		2	LPHN3	4	62903631	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	7308150	62903631	128250645	83	121868											
SULT1B1	27284	broad.mit.edu	37	chr4	70600057	70600057	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaaaattaacctatacGcatgtaaaaaagcagagtac	7	6	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70600057	T	T	70600057	1	4	139	0	1	0	0	0	0	0	0	0	15494	1102	38	3		3	SULT1B1	4	70600057	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	7696426	70600057	120554219	84	121869											
WDFY3	23001	broad.mit.edu	37	chr4	85662997	85662997	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagcttgtccaccacacGctgtgtgaaataaaacacat	6	12	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85662997	A	A	85662997	3	1	139	1	0	0	0	0	1	0	0	0	17397	1087	38	4	4553	4	WDFY3	4	85662997	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	15062940	85662997	105491279	85	121870											
TMSL3	7117	broad.mit.edu	37	chr4	91760173	91760173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctcgatctcagccatatCgggtttgtcagacatggttg	10	9	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91760173	A	A	91760173	3	1	139	1	0	0	0	0	1	0	0	0	16382	884	31	3	122	3	TMSL3	4	91760173	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	6097176	91760173	99394103	86	121871											
SLC39A8	64116	broad.mit.edu	37	chr4	103228795	103228795	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaagagagtagaaattAatcagagcaaggaaccaaat	11	4	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103228795	C	C	103228795	1	2	139	0	1	0	0	0	0	0	0	0	14738	377	13	5		5	SLC39A8	4	103228795	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	11468622	103228795	87925481	87	121872											
SEC24D	9871	broad.mit.edu	37	chr4	119745872	119745873	+	Frame_Shift_Ins	INS	-	G	G													aacattcccctagtggcggtINSggcccccaaaggccctgctg							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119745873	G	G	119745872	7	5	139	1	0	1	1	0	0	0	0	0	14110	1696	59	0	3031	0	SEC24D	4	119745872	Frame_Shift_Ins	INS	-	TCGA-49-4506-01A-01D-1265-08	16517077	119745872	71408404	88	121873											
DCLK2	166614	broad.mit.edu	37	chr4	151169531	151169531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatcctgagtcacccctgGgtgtcagtaagtacccacat	8	13	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151169531	T	T	151169531	3	4	139	1	0	0	0	0	1	0	0	0	4325	1241	43	2	2004	2	DCLK2	4	151169531	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	31423659	151169531	39984745	89	121874											
FGB	2244	broad.mit.edu	37	chr4	155490722	155490722	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaccaggatgggacccacaGaacttttgatagaaatggag	11	7	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155490722	C	C	155490722	3	2	139	1	0	0	0	0	1	0	0	0	5888	943	33	4	1041	4	FGB	4	155490722	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	4321191	155490722	35663554	90	121875											
MARCH1	55016	broad.mit.edu	37	chr4	164506998	164506998	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttatccactggtggaggcagGactggtggacaaagcgcagt	15	8	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164506998	A	A	164506998	3	1	139	1	0	0	0	0	1	0	0	0	9390	1174	41	4	555	4	MARCH1	4	164506998	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	9016276	164506998	26647278	91	121876											
WDR17	116966	broad.mit.edu	37	chr4	177069485	177069485	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcacggtgcagatgtataTggtagagtgtctttcattct	11	6	4	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177069485	C	C	177069485	2	2	139	1	0	0	0	0	0	0	0	1	17404	1478	51	5		5	WDR17	4	177069485	Silent	SNP	T	TCGA-49-4506-01A-01D-1265-08	12562487	177069485	14084791	92	121877											
NEIL3	55247	broad.mit.edu	37	chr4	178257420	178257420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgtattgcctggagtagGgaacatcatcaaaaatgaag	11	6	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178257420	T	T	178257420	3	4	139	1	0	0	0	0	1	0	0	0	10415	1232	43	2	586	2	NEIL3	4	178257420	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	1187935	178257420	12896856	93	121878											
SEMA5A	9037	broad.mit.edu	37	chr5	9154736	9154736	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcctctcagggaagagctCaatctcttccagcaaacagc	8	15	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9154736	T	T	9154736	3	4	139	1	0	0	0	0	1	0	0	0	14150	835	29	4	1927	4	SEMA5A	5	9154736	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08		9154736	171760524	94	121879											
MYO10	4651	broad.mit.edu	37	chr5	16680116	16680116	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccttggtgtcagtcacGttttgaatggcactggacca	14	9	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16680116	A	A	16680116	2	1	139	1	0	0	0	0	0	0	0	1	10156	1136	40	4		4	MYO10	5	16680116	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	7525380	16680116	164235144	95	121880											
PRDM9	56979	broad.mit.edu	37	chr5	23526335	23526335	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accctgaccaaaaacttcctCtttcagaaccaaagccagag	5	14	2	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23526335	T	T	23526335	1	4	139	0	1	0	0	0	0	0	0	0	12569	928	32	4		4	PRDM9	5	23526335	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	6846219	23526335	157388925	96	121881											
CDH9	1007	broad.mit.edu	37	chr5	26881622	26881622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttgggtatcttcttcccCgccgccttcatcgttgtagg	10	13	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881622	A	A	26881622	3	1	139	1	0	0	0	0	1	0	0	0	3147	652	23	1	380	1	CDH9	5	26881622	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	3355287	26881622	154033638	97	121882											
PDZD2	23037	broad.mit.edu	37	chr5	31923435	31923435	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattcccgatgcggtggttGctgtaaggggtcctccctgt	15	10	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31923435	T	T	31923435	1	4	139	0	1	0	0	0	0	0	0	0	11795	1334	46	3		3	PDZD2	5	31923435	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	5041813	31923435	148991825	98	121883											
HEATR7B2	133558	broad.mit.edu	37	chr5	41064610	41064610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcctttcatcctcggCcagcctgagcatggtttgca	8	14	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41064610	A	A	41064610	3	1	139	1	0	0	0	0	1	0	0	0	7102	739	26	3	4485	3	HEATR7B2	5	41064610	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	9141175	41064610	139850650	99	121884											
HMGCS1	3157	broad.mit.edu	37	chr5	43295813	43295813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaacagatattaaaaatgCtctaatatagaaggaaaaaa	5	4	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43295813	A	A	43295813	1	1	139	0	1	0	0	0	0	0	0	0	7299	812	28	3		3	HMGCS1	5	43295813	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	2231203	43295813	137619447	100	121885											
PDE4D	5144	broad.mit.edu	37	chr5	58271618	58271618	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcggtacagctggagagGctttgttgggttgctcagat	16	7	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58271618	A	A	58271618	3	1	139	1	0	0	0	0	1	0	0	0	11736	1203	42	4	558	4	PDE4D	5	58271618	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	14975805	58271618	122643642	101	121886											
SLCO4C1	353189	broad.mit.edu	37	chr5	101596033	101596036	+	Intron	DEL	AAAT	-	-													ttctgctgtacctaaaaaaaAaatatatatatatatataat					rs33944821		TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101596036	-	-	101596033	6	5	139	0	1	1	0	1	0	0	0	0	14844	29	1	0		0	SLCO4C1	5	101596033	Intron	DEL	AAAT	TCGA-49-4506-01A-01D-1265-08	43324415	101596033	79319227	102	121887											
MCC	4163	broad.mit.edu	37	chr5	112403903	112403903	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaagcacatggggccTcagcccttgcagagaacagc	11	12	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112403903	C	C	112403903	1	2	139	0	1	0	0	0	0	0	0	0	9466	1566	54	5		5	MCC	5	112403903	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	10807870	112403903	68511357	103	121888											
PCDHA5	56143	broad.mit.edu	37	chr5	140203159	140203159	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgcgcagtggaccctgattCgggctacaacgcttggcttt	13	12	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140203159	T	T	140203159	3	4	139	1	0	0	0	0	1	0	0	0	11621	893	31	4	1801	4	PCDHA5	5	140203159	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	27799256	140203159	40712101	104	121889											
PCDHB6	56130	broad.mit.edu	37	chr5	140531256	140531256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacatcggcagcgtcagcgCcacagacagagactcaggca	12	14	2	2	rs147347959		TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140531256	A	A	140531256	3	1	139	1	0	0	0	0	1	0	0	0	11640	739	26	3	1420	3	PCDHB6	5	140531256	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	328097	140531256	40384004	105	121890											
PCDHGA8	9708	broad.mit.edu	37	chr5	140772816	140772816	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaaaattaacgaaatcGcggttcctggagcacgttat	9	7	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140772816	A	A	140772816	3	1	139	1	0	0	0	0	1	0	0	0	11654	1087	38	4	438	4	PCDHGA8	5	140772816	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	241560	140772816	40142444	106	121891											
PPARGC1B	133522	broad.mit.edu	37	chr5	149221870	149221870	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccagcgacatgagctccCgagagctgaagaggcgcttt	12	12	1	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149221870	T	T	149221870	4	4	139	1	0	0	0	0	0	1	0	0	12397	644	23	4	2791	4	PPARGC1B	5	149221870	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	8449054	149221870	31693390	107	121892											
NMUR2	56923	broad.mit.edu	37	chr5	151784153	151784153	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcagggagaagagcacGgagaagccccagacgatgcc	16	10	0	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151784153	A	A	151784153	2	1	139	1	0	0	0	0	0	0	0	1	10602	1103	39	4		4	NMUR2	5	151784153	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	2562283	151784153	29131107	108	121893											
DOCK2	1794	broad.mit.edu	37	chr5	169144340	169144340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaggtaaagatggcttcCtgccctgggtttgccctgaa	12	11	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169144340	A	A	169144340	1	1	139	0	1	0	0	0	0	0	0	0	4727	696	24	2		2	DOCK2	5	169144340	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	17360187	169144340	11770920	109	121894											
F13A1	2162	broad.mit.edu	37	chr6	6182331	6182331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacattttccaccacatgaGtgccatctttcttagctgta	5	13	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6182331	T	T	6182331	3	4	139	1	0	0	0	0	1	0	0	0	5383	1029	36	3	869	3	F13A1	6	6182331	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08		6182331	164932736	110	121895											
BTN3A3	10384	broad.mit.edu	37	chr6	26448792	26448792	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtttattttcccaaaaccCcccttacccataactgttct	3	14	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26448792	G	G	26448792	1	3	139	0	1	0	0	0	0	0	0	0	1574	638	22	4		4	BTN3A3	6	26448792	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	20266461	26448792	144666275	111	121896											
HIST1H4K	8362	broad.mit.edu	37	chr6	27799467	27799467	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggccaaaccgaaataggGggaaaaaaaaagcgagcttc	12	7	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27799467	A	A	27799467	1	1	139	0	1	0	0	0	0	0	0	0	7242	1247	43	4		4	HIST1H4K	6	27799467	5'Flank	SNP	G	TCGA-49-4506-01A-01D-1265-08	1350675	27799467	143315600	112	121897											
VARS	7407	broad.mit.edu	37	chr6	31751989	31751989	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaactgtggacagtcccccAcctggtatctggtatctttg	9	12	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31751989	G	G	31751989	5	3	139	1	0	0	0	0	0	0	1	0	17250	173	6	5	2193	5	VARS	6	31751989	Splice_Site	SNP	A	TCGA-49-4506-01A-01D-1265-08	3952522	31751989	139363078	113	121898											
DNAH8	1769	broad.mit.edu	37	chr6	38840137	38840137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacatatcgttttataacGtggtgctcatttgctatgca	8	8	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38840137	T	T	38840137	1	4	139	0	1	0	0	0	0	0	0	0	4647	1160	40	3		3	DNAH8	6	38840137	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	7088148	38840137	132274930	114	121899											
GCM1	8521	broad.mit.edu	37	chr6	52993300	52993301	+	Nonsense_Mutation	DNP	GG	CT	CT													tggctccaatggaagctgctGgtaaaagggttctgaagagt							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	52993301	CT	CT	52993300	4	2	139	1	0	0	0	0	0	1	0	0	6359	1357	47	4	299	4	GCM1	6	52993300	Nonsense_Mutation	DNP	GG	TCGA-49-4506-01A-01D-1265-08	14153163	52993300	118121767	115	121900											
C6orf142	90523	broad.mit.edu	37	chr6	54122024	54122024	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaatatttatgtcattgtCaatctgtttaaatgaaattt	4	3	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54122024	A	A	54122024	1	1	139	0	1	0	0	0	0	0	0	0	2356	841	29	3		3	C6orf142	6	54122024	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	1128724	54122024	116993043	116	121901											
FAM83B	222584	broad.mit.edu	37	chr6	54735136	54735136	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggaatggtatcgagtagCcattgatattctgattgaac	10	6	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54735136	T	T	54735136	3	4	139	1	0	0	0	0	1	0	0	0	5687	739	26	4	94	4	FAM83B	6	54735136	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	613112	54735136	116379931	117	121902											
BEND6	221336	broad.mit.edu	37	chr6	56869592	56869592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaatccatcaaagaattGggtgaccaattaggattgcc	10	7	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56869592	T	T	56869592	1	4	139	0	1	0	0	0	0	0	0	0	1407	1363	47	2		2	BEND6	6	56869592	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	2134456	56869592	114245475	118	121903											
RRAGD	58528	broad.mit.edu	37	chr6	90089717	90089717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctttcactaaagattagCattagcacatgcaaagctca	6	10	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90089717	A	A	90089717	1	1	139	0	1	0	0	0	0	0	0	0	13786	725	25	3		3	RRAGD	6	90089717	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	33220125	90089717	81025350	119	121904											
GPRC6A	222545	broad.mit.edu	37	chr6	117116852	117116852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaggaatgattcaggtGtatgtggagtgactgtgatt	14	3	1	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117116852	T	T	117116852	1	4	139	0	1	0	0	0	0	0	0	0	6794	1392	48	3		3	GPRC6A	6	117116852	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	27027135	117116852	53998215	120	121905											
ROS1	6098	broad.mit.edu	37	chr6	117647338	117647338	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtactgatatttattaCtgaacctttaggtaataagc	7	5	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117647338	T	T	117647338	1	4	139	0	1	0	0	0	0	0	0	0	13642	580	20	4		4	ROS1	6	117647338	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	530486	117647338	53467729	121	121906											
LAMA2	3908	broad.mit.edu	37	chr6	129465145	129465145	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattcgcctgagatttcagAggatccgcacactgaatgct	9	10	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129465145	G	G	129465145	3	3	139	1	0	0	0	0	1	0	0	0	8678	295	11	5	757	5	LAMA2	6	129465145	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	11817807	129465145	41649922	122	121907											
MOXD1	26002	broad.mit.edu	37	chr6	132693821	132693821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgttgtatctttgtttgGgatggggacctgtcttaata	11	4	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132693821	T	T	132693821	3	4	139	1	0	0	0	0	1	0	0	0	9814	1232	43	2	1288	2	MOXD1	6	132693821	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	3228676	132693821	38421246	123	121908											
MAP3K5	4217	broad.mit.edu	37	chr6	137041635	137041635	+	Missense_Mutation	SNP	T	A	A													agtatcacagtagaggatgaTgttgttggccatgctgaaac							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137041635	A	A	137041635	3	1	139	1	0	0	0	0	1	0	0	0	9345	1464	51	5	3699	5	MAP3K5	6	137041635	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	4347814	137041635	34073432	124	121909	531	2									
MAP3K5	4217	broad.mit.edu	37	chr6	137041644	137041644	+	Missense_Mutation	SNP	C	A	A													gtagaggatgatgttgttggCcatgctgaaactttctctca							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137041644	A	A	137041644	3	1	139	1	0	0	0	0	1	0	0	0	9345	739	26	3	3708	3	MAP3K5	6	137041644	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	9	137041644	34073423	125	121910	531	2									
MACC1	346389	broad.mit.edu	37	chr7	20198725	20198726	+	Frame_Shift_Ins	INS	-	A	A													taaaaatgactgcttcccccINSagagctgaaacacaactgga							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20198726	A	A	20198725	7	5	139	1	0	1	1	0	0	0	0	0	9231	595	21	0	1311	0	MACC1	7	20198725	Frame_Shift_Ins	INS	-	TCGA-49-4506-01A-01D-1265-08		20198725	138939938	126	121911											
CREB5	9586	broad.mit.edu	37	chr7	28610075	28610075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccaaccatgacaccaaCgttgtgattcagcaagccat	7	14	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28610075	A	A	28610075	3	1	139	1	0	0	0	0	1	0	0	0	3892	535	19	3	402	3	CREB5	7	28610075	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	8411350	28610075	130528588	127	121912											
NOD1	10392	broad.mit.edu	37	chr7	30492655	30492655	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctgctgggtatacctgctCactggagggagggggtggca	18	8	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30492655	T	T	30492655	2	4	139	1	0	0	0	0	0	0	0	1	10611	840	29	4		4	NOD1	7	30492655	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	1882580	30492655	128646008	128	121913											
PSPH	5723	broad.mit.edu	37	chr7	56087408	56087408	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctttgaaaggcactgcccCgcccatggctcgccgtgtcc	11	16	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56087408	G	G	56087408	3	3	139	1	0	0	0	0	1	0	0	0	12823	652	23	4	533	4	PSPH	7	56087408	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	25594753	56087408	103051255	129	121914											
CALN1	83698	broad.mit.edu	37	chr7	71275628	71275628	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttttccatcctgttcagctCcaagtatactcatgaacttg	6	11	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71275628	G	G	71275628	1	3	139	0	1	0	0	0	0	0	0	0	2617	870	30	4		4	CALN1	7	71275628	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	15188220	71275628	87863035	130	121915											
DTX2	113878	broad.mit.edu	37	chr7	76121568	76121568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtccagcaggcgctcgCaggtaggtgcctgacctcgg	15	13	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76121568	A	A	76121568	3	1	139	1	0	0	0	0	1	0	0	0	4834	710	25	3	1017	3	DTX2	7	76121568	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	4845940	76121568	83017095	131	121916											
HGF	3082	broad.mit.edu	37	chr7	81386504	81386504	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttcatactgttcttaCctgtgttcgtgtggtatcat	7	8	4	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81386504	T	T	81386504	5	4	139	1	0	0	0	0	0	0	1	0	7152	521	18	4	1783	4	HGF	7	81386504	Splice_Site	SNP	C	TCGA-49-4506-01A-01D-1265-08	5264936	81386504	77752159	132	121917											
CROT	54677	broad.mit.edu	37	chr7	86983743	86983743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggaagagtatattcaagGttatgattatagcataggat	10	3	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86983743	T	T	86983743	1	4	139	0	1	0	0	0	0	0	0	0	3926	1276	44	3		3	CROT	7	86983743	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	5597239	86983743	72154920	133	121918											
TAF6	6878	broad.mit.edu	37	chr7	99705129	99705129	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagggagcagtgctgggggGtgcggtggtggcggtggaga	25	4	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99705129	C	C	99705129	3	2	139	1	0	0	0	0	1	0	0	0	15649	1261	44	4	263	4	TAF6	7	99705129	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	12721386	99705129	59433534	134	121919											
MOGAT3	346606	broad.mit.edu	37	chr7	100839574	100839574	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccatgagcttcttgaaGgtgagctggcaccaatgctg	12	10	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100839574	T	T	100839574	2	4	139	1	0	0	0	0	0	0	0	1	9790	987	35	2		2	MOGAT3	7	100839574	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	1134445	100839574	58299089	135	121920											
PIK3CG	5294	broad.mit.edu	37	chr7	106509606	106509606	+	Frame_Shift_Del	DEL	C	-	-													tagccctgcctaagcatcagCccacccctgacccggaaggg							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	106509606	-	-	106509606	7	5	139	1	0	1	0	1	0	0	0	0	12011	739	26	0	1602	0	PIK3CG	7	106509606	Frame_Shift_Del	DEL	C	TCGA-49-4506-01A-01D-1265-08	5670032	106509606	52629057	136	121921											
NRCAM	4897	broad.mit.edu	37	chr7	107823140	107823140	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaaatggcatcacttacgGtcttctccagaatgtcccat	8	11	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107823140	C	C	107823140	3	2	139	1	0	0	0	0	1	0	0	0	10739	1275	44	4	1459	4	NRCAM	7	107823140	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	1313534	107823140	51315523	137	121922											
TAS2R16	50833	broad.mit.edu	37	chr7	122635164	122635164	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatgagcctggaactgataCtgatgaaaattttcaagttt	9	5	1	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122635164	G	G	122635164	3	3	139	1	0	0	0	0	1	0	0	0	15688	564	20	4	354	4	TAS2R16	7	122635164	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	14812024	122635164	36503499	138	121923											
KIAA1549	57670	broad.mit.edu	37	chr7	138603645	138603645	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcctgccaggagttggaaCgatgccctcagaggtgcgaa	13	10	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138603645	G	G	138603645	3	3	139	1	0	0	0	0	1	0	0	0	8314	536	19	4	5201	4	KIAA1549	7	138603645	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	15968481	138603645	20535018	139	121924											
TRPV5	56302	broad.mit.edu	37	chr7	142612257	142612257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgagagacaagctggaaCtattttaggtccctacagca	11	8	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142612257	A	A	142612257	1	1	139	0	1	0	0	0	0	0	0	0	16724	580	20	3		3	TRPV5	7	142612257	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	4008612	142612257	16526406	140	121925											
MLL3	58508	broad.mit.edu	37	chr7	151945190	151945190	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagacacatctgccttgcTtatgtctgctgatgatgaaa	10	8	2	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151945190	A	A	151945190	3	1	139	1	0	0	0	0	1	0	0	0	9715	1609	56	5	12590	5	MLL3	7	151945190	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	9332933	151945190	7193473	141	121926											
MFHAS1	9258	broad.mit.edu	37	chr8	8748245	8748245	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccggagcagttcctggctgGgggtggaccgcgccatgggc	18	13	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8748245	C	C	8748245	3	2	139	1	0	0	0	0	1	0	0	0	9614	1232	43	4	846	4	MFHAS1	8	8748245	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08		8748245	137615777	142	121927											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19297485	19297485	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctggcacctgttttcacaCtgacaggcacagcacaaacc	8	14	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19297485	G	G	19297485	1	3	139	0	1	0	0	0	0	0	0	0	3972	580	20	4		4	CSGALNACT1	8	19297485	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	10549240	19297485	127066537	143	121928											
ADAM7	8756	broad.mit.edu	37	chr8	24350141	24350141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggaaaaaaagtaatttgCcttcttacagcactttgtca	7	7	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24350141	A	A	24350141	1	1	139	0	1	0	0	0	0	0	0	0	251	754	26	3		3	ADAM7	8	24350141	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	5052656	24350141	122013881	144	121929											
EXTL3	2137	broad.mit.edu	37	chr8	28574048	28574048	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagctgtccctgcccatcCgactgctcccagagaaggac	9	17	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28574048	T	T	28574048	4	4	139	1	0	0	0	0	0	1	0	0	5370	644	23	4	474	4	EXTL3	8	28574048	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	4223907	28574048	117789974	145	121930											
KCNU1	157855	broad.mit.edu	37	chr8	36767169	36767169	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccagatgccagaaactgttCtaaatattttacctatatta	5	8	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36767169	A	A	36767169	1	1	139	0	1	0	0	0	0	0	0	0	8163	928	32	3		3	KCNU1	8	36767169	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	8193121	36767169	109596853	146	121931											
MCM4	4173	broad.mit.edu	37	chr8	48883365	48883365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgctgtatcgatgagttcGacaagatgaatgaaagtaca	10	6	1	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48883365	T	T	48883365	3	4	139	1	0	0	0	0	1	0	0	0	9482	1058	37	3	1771	3	MCM4	8	48883365	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	12116196	48883365	97480657	147	121932											
SNTG1	54212	broad.mit.edu	37	chr8	51617374	51617374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatgaccacttccctagaGttctaatatcattccaaagt	5	11	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51617374	T	T	51617374	1	4	139	0	1	0	0	0	0	0	0	0	14988	1044	36	3		3	SNTG1	8	51617374	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	2734009	51617374	94746648	148	121933											
RP1	6101	broad.mit.edu	37	chr8	55540191	55540191	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgtgcccctgaagtctGtgttttggaagtgacttgct	13	8	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55540191	A	A	55540191	3	1	139	1	0	0	0	0	1	0	0	0	13643	1377	48	4	3759	4	RP1	8	55540191	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	3922817	55540191	90823831	149	121934											
TGS1	96764	broad.mit.edu	37	chr8	56695311	56695311	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttaatctgcttcgcagggatCgaaaattgtacaatttggga	10	6	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56695311	T	T	56695311	4	4	139	1	0	0	0	0	0	1	0	0	15960	876	31	4	112	4	TGS1	8	56695311	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	1155120	56695311	89668711	150	121935											
CSPP1	79848	broad.mit.edu	37	chr8	67986590	67986590	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttacatggaaatgaaggtaAatttaataattttctttgaa	6	3	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67986590	T	T	67986590	1	4	139	0	1	0	0	0	0	0	0	0	3996	29	1	5		5	CSPP1	8	67986590	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	11291279	67986590	78377432	151	121936											
PREX2	80243	broad.mit.edu	37	chr8	68989552	68989552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttgtctgaatttggtgCtgggaatgttaaatggagca	13	4	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68989552	A	A	68989552	1	1	139	0	1	0	0	0	0	0	0	0	12583	812	28	3		3	PREX2	8	68989552	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	1002962	68989552	77374470	152	121937											
NCOA2	10499	broad.mit.edu	37	chr8	71060466	71060466	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtttctgatagtgattaTatggaaatttcttggcataa	8	5	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71060466	C	C	71060466	1	2	139	0	1	0	0	0	0	0	0	0	10324	1421	49	5		5	NCOA2	8	71060466	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	2070914	71060466	75303556	153	121938											
CSMD3	114788	broad.mit.edu	37	chr8	113569029	113569029	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatagtcccatgcccttctCtcccctgtcatgcacttgag	8	15	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113569029	A	A	113569029	3	1	139	1	0	0	0	0	1	0	0	0	3980	912	32	3	7114	3	CSMD3	8	113569029	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	42508563	113569029	32794993	154	121939											
IFNA4	3441	broad.mit.edu	37	chr9	21187398	21187398	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaaatgagagattcttcCcatttgtgccaggagtatca	11	7	2	3	rs145690832	byFrequency	TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21187398	T	T	21187398	3	4	139	1	0	0	0	0	1	0	0	0	7609	632	22	4	440	4	IFNA4	9	21187398	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08		21187398	120026033	155	121940											
DDX58	23586	broad.mit.edu	37	chr9	32480358	32480358	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcatcattatatttctgttGaaagtaaaaactgtctcaat	6	6	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32480358	T	T	32480358	1	4	139	0	1	0	0	0	0	0	0	0	4408	1305	45	3		3	DDX58	9	32480358	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	11292960	32480358	108733073	156	121941											
NOL6	65083	broad.mit.edu	37	chr9	33469596	33469596	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggccaggtggtgagccaAgtgggccaggtagagggcac	19	9	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33469596	C	C	33469596	3	2	139	1	0	0	0	0	1	0	0	0	10620	69	3	5	2900	5	NOL6	9	33469596	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	989238	33469596	107743835	157	121942											
KIF27	55582	broad.mit.edu	37	chr9	86451768	86451768	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatatagaagatgtacacAtctatagcatataaaagaat	5	4	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86451768	G	G	86451768	1	3	139	0	1	0	0	0	0	0	0	0	8366	232	8	5		5	KIF27	9	86451768	3'UTR	SNP	A	TCGA-49-4506-01A-01D-1265-08	52982172	86451768	54761663	158	121943											
ROR2	4920	broad.mit.edu	37	chr9	94499905	94499906	+	Intron	DNP	TG	AT	AT													gatccagcaattttgttactTggtatttatataagtaaatt							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	94499906	AT	AT	94499905	1	1	139	0	1	0	0	0	0	0	0	0	13638	1827	63	5		5	ROR2	9	94499905	Intron	DNP	TG	TCGA-49-4506-01A-01D-1265-08	8048137	94499905	46713526	159	121944											
SLC44A1	23446	broad.mit.edu	37	chr9	108123663	108123663	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtgtttttgtttgcaggaGatcattaatggagcagaaac	11	4	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108123663	A	A	108123663	1	1	139	0	1	0	0	0	0	0	0	0	14749	957	33	4		4	SLC44A1	9	108123663	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	13623758	108123663	33089768	160	121945											
RGS3	5998	broad.mit.edu	37	chr9	116353680	116353680	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaaagagcaaaaacctgtAcgttgggaagatccctggct	12	8	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116353680	G	G	116353680	1	3	139	0	1	0	0	0	0	0	0	0	13415	406	14	5		5	RGS3	9	116353680	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	8230017	116353680	24859751	161	121946											
PAPPA	5069	broad.mit.edu	37	chr9	118982243	118982243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacggactccttcacgcCcaatcaagtcgccagaatgc	8	15	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118982243	A	A	118982243	3	1	139	1	0	0	0	0	1	0	0	0	11526	623	22	2	1964	2	PAPPA	9	118982243	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	2628563	118982243	22231188	162	121947											
SET	6418	broad.mit.edu	37	chr9	131456048	131456048	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgagttaggagaggtcatCaaagatgatatttggccaaa	12	4	2	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131456048	A	A	131456048	2	1	139	1	0	0	0	0	0	0	0	1	14241	816	29	3		3	SET	9	131456048	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	12473805	131456048	9757383	163	121948											
ENTPD2	954	broad.mit.edu	37	chr9	139944797	139944797	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagcatcgggagaaggggCaggaggagaagctgaagagc	19	5	0	5			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139944797	T	T	139944797	3	4	139	1	0	0	0	0	1	0	0	0	5181	710	25	4	535	4	ENTPD2	9	139944797	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	8488749	139944797	1268634	164	121949											
EXD3	54932	broad.mit.edu	37	chr9	140202014	140202015	+	Intron	DNP	CC	AG	AG													ggggaagcctggcaccagggCcgcagagaagcagctgtgtc							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	140202015	AG	AG	140202014	1	1	139	0	1	0	0	0	0	0	0	0	5341	754	26	3		3	EXD3	9	140202014	Intron	DNP	CC	TCGA-49-4506-01A-01D-1265-08	257217	140202014	1011417	165	121950											
NOXA1	10811	broad.mit.edu	37	chr9	140327576	140327576	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaaggaggaagctgctGgtgcatgggtgccggctgcc	20	8	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140327576	C	C	140327576	1	2	139	0	1	0	0	0	0	0	0	0	10655	1363	47	4		4	NOXA1	9	140327576	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	125562	140327576	885855	166	121951											
CACNA1B	774	broad.mit.edu	37	chr9	140811945	140811945	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcctgagctggtgcctcTgggggtccatttaggggggc	16	11	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140811945	G	G	140811945	1	3	139	0	1	0	0	0	0	0	0	0	2565	1595	55	5		5	CACNA1B	9	140811945	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	484369	140811945	401486	167	121952											
FAM23A	653567	broad.mit.edu	37	chr10	18087561	18087561	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacgttgtgttattctacGctccaccaaatacctctccc	5	14	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18087561	T	T	18087561	1	4	139	0	1	0	0	0	0	0	0	0	5594	1102	38	3		3	FAM23A	10	18087561	3'UTR	SNP	G	TCGA-49-4506-01A-01D-1265-08		18087561	117447186	168	121953											
CREM	1390	broad.mit.edu	37	chr10	35464665	35464665	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatagtttgtcatttctcaGcagcaggaaaaagagaagta	10	5	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35464665	A	A	35464665	1	1	139	0	1	0	0	0	0	0	0	0	3900	986	34	4		4	CREM	10	35464665	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	17377104	35464665	100070082	169	121954											
ZNF37A	7587	broad.mit.edu	37	chr10	38404078	38404078	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgtcttcctccttcaggAaaacccacccagtttgtccc	5	16	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38404078	G	G	38404078	1	3	139	0	1	0	0	0	0	0	0	0	17998	261	9	5		5	ZNF37A	10	38404078	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	2939413	38404078	97130669	170	121955											
ZWINT	11130	broad.mit.edu	37	chr10	58118343	58118343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacaccagggtctctccCcatggtgtctcctgtactct	9	15	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58118343	A	A	58118343	3	1	139	1	0	0	0	0	1	0	0	0	18378	623	22	2	75	2	ZWINT	10	58118343	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	19714265	58118343	77416404	171	121956											
SEC24C	9632	broad.mit.edu	37	chr10	75525618	75525618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtggatgcttatgaccGccctgagctatccctgggct	12	12	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75525618	T	T	75525618	3	4	139	1	0	0	0	0	1	0	0	0	14109	1087	38	3	1461	3	SEC24C	10	75525618	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	17407275	75525618	60009129	172	121957											
SH2D4B	387694	broad.mit.edu	37	chr10	82369142	82369142	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctccgctctttctccctcCctgactcttctgccctcccc	3	24	4	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82369142	T	T	82369142	1	4	139	0	1	0	0	0	0	0	0	0	14349	638	22	4		4	SH2D4B	10	82369142	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	6843524	82369142	53165605	173	121958											
HELLS	3070	broad.mit.edu	37	chr10	96351893	96351893	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaagttttttaagtgacttGgctttgaaaattgaactttc	7	4	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96351893	C	C	96351893	1	2	139	0	1	0	0	0	0	0	0	0	7113	1363	47	4		4	HELLS	10	96351893	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	13982751	96351893	39182854	174	121959											
OPALIN	93377	broad.mit.edu	37	chr10	98105750	98105750	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatcccctccttctttccAtttctatagtaggacggtaa	5	12	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98105750	G	G	98105750	3	3	139	1	0	0	0	0	1	0	0	0	10967	217	8	5	55	5	OPALIN	10	98105750	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	1753857	98105750	37428997	175	121960											
PKD2L1	9033	broad.mit.edu	37	chr10	102059659	102059659	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaaatgcattaggaaagGgttgtagctacaatgtctcc	11	7	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102059659	A	A	102059659	1	1	139	0	1	0	0	0	0	0	0	0	12062	1247	43	4		4	PKD2L1	10	102059659	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	3953909	102059659	33475088	176	121961											
SORCS3	22986	broad.mit.edu	37	chr10	106937932	106937932	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagacccacatcatgacGtgagtacttcttttgctgtg	10	9	2	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106937932	T	T	106937932	5	4	139	1	0	0	0	0	0	0	1	0	15046	1159	40	3	2064	3	SORCS3	10	106937932	Splice_Site	SNP	G	TCGA-49-4506-01A-01D-1265-08	4878273	106937932	28596815	177	121962											
SORCS1	114815	broad.mit.edu	37	chr10	108489712	108489712	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accacacatccactattactCtgcatacaccatgagattat	3	13	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108489712	A	A	108489712	1	1	139	0	1	0	0	0	0	0	0	0	15044	928	32	3		3	SORCS1	10	108489712	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	1551780	108489712	27045035	178	121963											
SHOC2	8036	broad.mit.edu	37	chr10	112764460	112764460	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccatctcagttttctaccAtctattccctcaacatggaa	4	13	4	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112764460	G	G	112764460	3	3	139	1	0	0	0	0	1	0	0	0	14400	217	8	5	1083	5	SHOC2	10	112764460	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	4274748	112764460	22770287	179	121964											
ADRA2A	150	broad.mit.edu	37	chr10	112838174	112838174	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtccatcgtgcacctgtgCgccatcagcctggaccgcta	10	16	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112838174	T	T	112838174	2	4	139	1	0	0	0	0	0	0	0	1	337	776	27	4		4	ADRA2A	10	112838174	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	73714	112838174	22696573	180	121965											
AFAP1L2	84632	broad.mit.edu	37	chr10	116060424	116060424	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttgggtcatctgcaacaGgggtggcttcctcggtaggc	14	10	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116060424	A	A	116060424	3	1	139	1	0	0	0	0	1	0	0	0	355	1000	35	4	912	4	AFAP1L2	10	116060424	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	3222250	116060424	19474323	181	121966											
DMBT1	1755	broad.mit.edu	37	chr10	124358327	124358327	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgaggctggtgaatggAggtgacaggtgtcagggccg	19	8	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124358327	C	C	124358327	2	2	139	1	0	0	0	0	0	0	0	1	4617	291	11	5		5	DMBT1	10	124358327	Silent	SNP	A	TCGA-49-4506-01A-01D-1265-08	8297903	124358327	11176420	182	121967											
OR2AG1	144125	broad.mit.edu	37	chr11	6806454	6806454	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgcccatgtacctcctGcttgggcagctctctctcat	7	16	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6806454	T	T	6806454	2	4	139	1	0	0	0	0	0	0	0	1	11078	1306	46	3		3	OR2AG1	11	6806454	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08		6806454	128200062	183	121968											
NLRP14	338323	broad.mit.edu	37	chr11	7063760	7063760	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttggaacacttgttcgatgTggatgtcaaaaccggtgcac	12	8	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7063760	A	A	7063760	3	1	139	1	0	0	0	0	1	0	0	0	10571	1696	59	5	513	5	NLRP14	11	7063760	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	257306	7063760	127942756	184	121969											
OR5M3	219482	broad.mit.edu	37	chr11	56237132	56237132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcatgggattcaacatgGggatcactgtggtatagaac	12	6	3	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56237132	T	T	56237132	3	4	139	1	0	0	0	0	1	0	0	0	11269	1232	43	2	83	2	OR5M3	11	56237132	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	49173372	56237132	78769384	185	121970											
MS4A13	503497	broad.mit.edu	37	chr11	60310115	60310115	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctaatgatatctctgtAtaacaaagcagttacgaagc	8	8	1	1	rs149206803	by1000genomes	TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60310115	T	T	60310115	1	4	139	0	1	0	0	0	0	0	0	0	9951	464	16	5		5	MS4A13	11	60310115	3'UTR	SNP	A	TCGA-49-4506-01A-01D-1265-08	4072983	60310115	74696401	186	121971											
PRPF19	27339	broad.mit.edu	37	chr11	60668844	60668844	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcacagtcttccctctctGagaaaatgaaaagcccccaa	7	13	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60668844	T	T	60668844	1	4	139	0	1	0	0	0	0	0	0	0	12670	1305	45	3		3	PRPF19	11	60668844	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	358729	60668844	74337672	187	121972											
NRXN2	9379	broad.mit.edu	37	chr11	64375348	64375348	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaggcctcgatgggctcctCgcagtcgctgtcgtcccgct	13	16	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64375348	A	A	64375348	4	1	139	1	0	0	0	0	0	1	0	0	10761	893	31	3	683	3	NRXN2	11	64375348	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	3706504	64375348	70631168	188	121973											
SUV420H1	51111	broad.mit.edu	37	chr11	67926680	67926680	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaaagccttggtaacaGcagagttcaagaaaagaatg	12	5	1	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67926680	C	C	67926680	1	2	139	0	1	0	0	0	0	0	0	0	15532	986	34	4		4	SUV420H1	11	67926680	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	3551332	67926680	67079836	189	121974											
ODZ4	26011	broad.mit.edu	37	chr11	78412983	78412983	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccggataaaccgaattcGgatgttcccaaggtcggcca	10	12	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78412983	A	A	78412983	4	1	139	1	0	0	0	0	0	1	0	0	10932	1124	39	4	3662	4	ODZ4	11	78412983	Nonsense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	10486303	78412983	56593533	190	121975											
FAT3	120114	broad.mit.edu	37	chr11	92086791	92086791	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataaggataaaggagaaaatGggtacatcacctatagtatc	9	5	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92086791	C	C	92086791	3	2	139	1	0	0	0	0	1	0	0	0	5748	1348	47	4	1515	4	FAT3	11	92086791	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	13673808	92086791	42919725	191	121976											
DYNC2H1	79659	broad.mit.edu	37	chr11	103006491	103006491	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccttttgaagaaatccgGgctaaatattatagagaaat	7	8	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103006491	T	T	103006491	2	4	139	1	0	0	0	0	0	0	0	1	4886	1219	43	2		2	DYNC2H1	11	103006491	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	10919700	103006491	32000025	192	121977											
NCAM1	4684	broad.mit.edu	37	chr11	113076778	113076778	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttctagtccgattcatagtCctgtccaacaactacctgca	5	14	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113076778	A	A	113076778	2	1	139	1	0	0	0	0	0	0	0	1	10297	842	30	3		3	NCAM1	11	113076778	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	10070287	113076778	21929738	193	121978											
APOA5	116519	broad.mit.edu	37	chr11	116660968	116660968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtttgttgaaactctGgggcgaaggcactgtggcct	14	8	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116660968	T	T	116660968	3	4	139	1	0	0	0	0	1	0	0	0	786	1348	47	2	127	2	APOA5	11	116660968	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	3584190	116660968	18345548	194	121979											
C2CD2L	9854	broad.mit.edu	37	chr11	118981185	118981185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttaggaaaacggaagtgGggaggggtctgctgaactat	15	6	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118981185	T	T	118981185	1	4	139	0	1	0	0	0	0	0	0	0	2175	1247	43	2		2	C2CD2L	11	118981185	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	2320217	118981185	16025331	195	121980											
PVRL1	5818	broad.mit.edu	37	chr11	119509492	119509492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgggagaaggctccggCttctgggagaggggctggtc	19	9	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119509492	A	A	119509492	3	1	139	1	0	0	0	0	1	0	0	0	12947	796	28	3	208	3	PVRL1	11	119509492	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	528307	119509492	15497024	196	121981											
DYRK4	8798	broad.mit.edu	37	chr12	4711721	4711721	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tataagtggagggatataagCcaacggctctcctgttgatg	12	7	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4711721	G	G	4711721	1	3	139	0	1	0	0	0	0	0	0	0	4898	754	26	4		4	DYRK4	12	4711721	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08		4711721	129140174	197	121982											
NECAP1	25977	broad.mit.edu	37	chr12	8244385	8244385	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcagtgctttcattggcAttggcttcacagatcgggga	14	9	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8244385	G	G	8244385	3	3	139	1	0	0	0	0	1	0	0	0	10402	217	8	5	336	5	NECAP1	12	8244385	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	3532664	8244385	125607510	198	121983											
A2M	2	broad.mit.edu	37	chr12	9246018	9246018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagttgaaaatagtcagGgacctctattgttgcatatt	9	5	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9246018	T	T	9246018	1	4	139	0	1	0	0	0	0	0	0	0	4	1247	43	2		2	A2M	12	9246018	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	1001633	9246018	124605877	199	121984											
GRIN2B	2904	broad.mit.edu	37	chr12	13768186	13768186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcccactgccatgtaggCcctcttcatgaccacctaaa	7	15	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13768186	A	A	13768186	3	1	139	1	0	0	0	0	1	0	0	0	6846	739	26	3	2966	3	GRIN2B	12	13768186	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	4522168	13768186	120083709	200	121985											
ATF7IP	55729	broad.mit.edu	37	chr12	14578064	14578064	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagatgaaacttctgcagaTcttgtagaaacgattaatga	9	5	2	5			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14578064	C	C	14578064	2	2	139	1	0	0	0	0	0	0	0	1	1091	1432	50	5		5	ATF7IP	12	14578064	Silent	SNP	T	TCGA-49-4506-01A-01D-1265-08	809878	14578064	119273831	201	121986											
ABCC9	10060	broad.mit.edu	37	chr12	22065792	22065792	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatatgtttccattgaaaatCaccaggaacttactccagtt	5	9	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22065792	G	G	22065792	1	3	139	0	1	0	0	0	0	0	0	0	59	841	29	4		4	ABCC9	12	22065792	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	7487728	22065792	111786103	202	121987											
OVCH1	341350	broad.mit.edu	37	chr12	29614910	29614910	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttctaacacatgcacttgAatctgctgtaggcgacttgc	8	11	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29614910	T	T	29614910	2	4	139	1	0	0	0	0	0	0	0	1	11417	242	9	5		5	OVCH1	12	29614910	Silent	SNP	A	TCGA-49-4506-01A-01D-1265-08	7549118	29614910	104236985	203	121988											
GPD1	2819	broad.mit.edu	37	chr12	50497763	50497763	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacccacgtgtggtggagTtaaatgctcctagccggcag	13	11	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50497763	G	G	50497763	1	3	139	0	1	0	0	0	0	0	0	0	6669	1740	60	5		5	GPD1	12	50497763	5'Flank	SNP	T	TCGA-49-4506-01A-01D-1265-08	20882853	50497763	83354132	204	121989											
RBMS2	5939	broad.mit.edu	37	chr12	56980776	56980776	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaaaactggctgggcActgtggctcacgcctgtaat	11	9	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56980776	T	T	56980776	1	4	139	0	1	0	0	0	0	0	0	0	13257	174	6	5		5	RBMS2	12	56980776	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	6483013	56980776	76871119	205	121990											
LRP1	4035	broad.mit.edu	37	chr12	57577350	57577350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggagctttaggggtggtGtggtgtgccctgagggtcca	19	6	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57577350	T	T	57577350	1	4	139	0	1	0	0	0	0	0	0	0	9038	1392	48	3		3	LRP1	12	57577350	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	596574	57577350	76274545	206	121991											
KIF5A	3798	broad.mit.edu	37	chr12	57969842	57969842	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaagaggtaggtttgatGtcagctgtcttcccctcttt	10	10	3	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57969842	A	A	57969842	1	1	139	0	1	0	0	0	0	0	0	0	8375	1392	48	4		4	KIF5A	12	57969842	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	392492	57969842	75882053	207	121992											
C12orf50	160419	broad.mit.edu	37	chr12	88388253	88388253	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggtatttggcagagattTtggtctctgaaagcaactga	11	6	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88388253	C	C	88388253	1	2	139	0	1	0	0	0	0	0	0	0	1708	1856	64	5		5	C12orf50	12	88388253	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	30418411	88388253	45463642	208	121993											
CDK17	5128	broad.mit.edu	37	chr12	96694092	96694092	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttacttacctctccaagcTtttccaatttgatgtaggtt	5	9	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96694092	C	C	96694092	3	2	139	1	0	0	0	0	1	0	0	0	3163	1609	56	5	1067	5	CDK17	12	96694092	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	8305839	96694092	37157803	209	121994											
C12orf63	374467	broad.mit.edu	37	chr12	97147477	97147477	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggcttgttataaacacCgtgtatttttttgttcttcc	8	7	1	0	rs151307591	by1000genomes	TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97147477	T	T	97147477	1	4	139	0	1	0	0	0	0	0	0	0	1719	667	23	4		4	C12orf63	12	97147477	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	453385	97147477	36704418	210	121995											
TMEM120B	144404	broad.mit.edu	37	chr12	122213512	122213512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctctctggactccccCaggtgttcgtactggcgttc	9	17	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122213512	A	A	122213512	1	1	139	0	1	0	0	0	0	0	0	0	16157	609	21	2		2	TMEM120B	12	122213512	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	25066035	122213512	11638383	211	121996											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20240685	20240685	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaagcagtctaacaatgtgCttgtgtacgacttgctgaag	11	8	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20240685	T	T	20240685	3	4	139	1	0	0	0	0	1	0	0	0	9821	797	28	4	2178	4	MPHOSPH8	13	20240685	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08		20240685	94929193	212	121997											
ZMYM5	9205	broad.mit.edu	37	chr13	20425887	20425888	+	Missense_Mutation	DNP	CC	AA	AA													cgttggttttgtttttagttCcaggaagtccccattcgata							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20425888	AA	AA	20425887	3	1	139	1	0	0	0	0	1	0	0	0	17829	855	30	3	1710	3	ZMYM5	13	20425887	Missense_Mutation	DNP	CC	TCGA-49-4506-01A-01D-1265-08	185202	20425887	94743991	213	121998											
XPO4	64328	broad.mit.edu	37	chr13	21373447	21373447	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaactgcttagctaaattccAccagttctcacattgaatta	4	10	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21373447	T	T	21373447	3	4	139	1	0	0	0	0	1	0	0	0	17573	159	6	5	1308	5	XPO4	13	21373447	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	947560	21373447	93796431	214	121999											
MTMR6	9107	broad.mit.edu	37	chr13	25848295	25848295	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgacttgttgctggtacTgaatcggtcaagtaatttta	9	5	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25848295	C	C	25848295	3	2	139	1	0	0	0	0	1	0	0	0	10041	1580	55	5	1862	5	MTMR6	13	25848295	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	4474848	25848295	89321583	215	122000											
PAN3	255967	broad.mit.edu	37	chr13	28854560	28854560	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgggtaggtatttgttgaCtgaccaaaacaggatgcgaa	12	6	0	2	rs141442348		TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28854560	G	G	28854560	3	3	139	1	0	0	0	0	1	0	0	0	11509	565	20	4	2263	4	PAN3	13	28854560	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	3006265	28854560	86315318	216	122001											
FLT1	2321	broad.mit.edu	37	chr13	29041231	29041231	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcgctttccttactcaccAtttcaggcaaagaccattta	4	12	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29041231	G	G	29041231	3	3	139	1	0	0	0	0	1	0	0	0	5999	217	8	5	4194	5	FLT1	13	29041231	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	186671	29041231	86128647	217	122002											
FRY	10129	broad.mit.edu	37	chr13	32653165	32653165	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtatcattatggcagagCccctggtgagtacatgccgt	11	10	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32653165	T	T	32653165	3	4	139	1	0	0	0	0	1	0	0	0	6123	739	26	4	271	4	FRY	13	32653165	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	3611934	32653165	82516713	218	122003											
PCDH8	5100	broad.mit.edu	37	chr13	53422550	53422550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaaaaggcaggggctgcCccaacgcctcacaggactca	14	13	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53422550	A	A	53422550	3	1	139	1	0	0	0	0	1	0	0	0	11611	623	22	2	3202	2	PCDH8	13	53422550	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	20769385	53422550	61747328	219	122004											
PCDH17	27253	broad.mit.edu	37	chr13	58207733	58207733	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacgacaatgcgccgtccatCggtttcgtctccgtgcgcca	10	15	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58207733	A	A	58207733	2	1	139	1	0	0	0	0	0	0	0	1	11606	874	31	3		3	PCDH17	13	58207733	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	4785183	58207733	56962145	220	122005											
KLHL1	57626	broad.mit.edu	37	chr13	70549689	70549689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataatattctgcaatctgCatgccagtctggcactttta	6	9	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70549689	A	A	70549689	1	1	139	0	1	0	0	0	0	0	0	0	8436	725	25	3		3	KLHL1	13	70549689	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	12341956	70549689	44620189	221	122006											
GPC5	2262	broad.mit.edu	37	chr13	92560221	92560221	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtgtggttggaaatggaatCaaagcccagtctggaaatcc	12	8	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92560221	A	A	92560221	2	1	139	1	0	0	0	0	0	0	0	1	6666	816	29	3		3	GPC5	13	92560221	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	22010532	92560221	22609657	222	122007											
GPC5	2262	broad.mit.edu	37	chr13	93518617	93518617	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttagacacaacaggagcAggatgtgcagtggcgactga	13	8	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93518617	T	T	93518617	2	4	139	1	0	0	0	0	0	0	0	1	6666	175	7	5		5	GPC5	13	93518617	Silent	SNP	A	TCGA-49-4506-01A-01D-1265-08	958396	93518617	21651261	223	122008											
PROZ	8858	broad.mit.edu	37	chr13	113819450	113819450	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcaggtaacagagcgctctCcgcgtgcttcaatttattgt	11	10	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113819450	A	A	113819450	1	1	139	0	1	0	0	0	0	0	0	0	12668	870	30	3		3	PROZ	13	113819450	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	20300833	113819450	1350428	224	122009											
NPAS3	64067	broad.mit.edu	37	chr14	34243683	34243683	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtcagaattgactgccaTatgttcgtcactcgagtaaa	9	8	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34243683	C	C	34243683	2	2	139	1	0	0	0	0	0	0	0	1	10659	1403	49	5		5	NPAS3	14	34243683	Silent	SNP	T	TCGA-49-4506-01A-01D-1265-08		34243683	73105857	225	122010											
LRFN5	145581	broad.mit.edu	37	chr14	42373450	42373450	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggataaaattcaaaaatGtttcaattcacaaaggctaa	5	6	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42373450	T	T	42373450	1	4	139	0	1	0	0	0	0	0	0	0	9028	1392	48	3		3	LRFN5	14	42373450	3'UTR	SNP	G	TCGA-49-4506-01A-01D-1265-08	8129767	42373450	64976090	226	122011											
KLHL28	54813	broad.mit.edu	37	chr14	45414728	45414728	+	Frame_Shift_Del	DEL	C	-	-													gagaaattccaatacaattaCcaggatcaagttggctttca							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45414728	-	-	45414728	7	5	139	1	0	1	0	1	0	0	0	0	8453	507	18	0	1327	0	KLHL28	14	45414728	Frame_Shift_Del	DEL	C	TCGA-49-4506-01A-01D-1265-08	3041278	45414728	61934812	227	122012											
SOS2	6655	broad.mit.edu	37	chr14	50600930	50600930	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttttcagatgcacttcCcatggggttaaggttttcaa	8	9	3	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50600930	A	A	50600930	4	1	139	1	0	0	0	0	0	1	0	0	15051	632	22	2	1032	2	SOS2	14	50600930	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	5186202	50600930	56748610	228	122013											
FAM181A	90050	broad.mit.edu	37	chr14	94394801	94394802	+	Missense_Mutation	DNP	GG	TT	TT													gaagtattcccggctcccgcGgggccttcctggcagagctg					rs146784848		TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	94394802	TT	TT	94394801	3	4	139	1	0	0	0	0	1	0	0	0	5554	1116	39	1	362	1	FAM181A	14	94394801	Missense_Mutation	DNP	GG	TCGA-49-4506-01A-01D-1265-08	43793871	94394801	12954739	229	122014											
SERPINA4	5267	broad.mit.edu	37	chr14	95033256	95033256	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattccctggctggaggacTagctctgtggcctgcagatg	14	11	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95033256	C	C	95033256	1	2	139	0	1	0	0	0	0	0	0	0	14204	1537	53	5		5	SERPINA4	14	95033256	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	638455	95033256	12316284	230	122015											
SLC25A29	123096	broad.mit.edu	37	chr14	100772642	100772642	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgccgggctgggcgccgtCggggtccccgagcgcgcggt	19	16	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100772642	A	A	100772642	1	1	139	0	1	0	0	0	0	0	0	0	14606	899	31	3		3	SLC25A29	14	100772642	5'UTR	SNP	C	TCGA-49-4506-01A-01D-1265-08	5739386	100772642	6576898	231	122016											
C14orf68	283600	broad.mit.edu	37	chr14	100795530	100795530	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcagttctcccaacaccaaGagtcaggacagacttgctgt	8	13	3	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100795530	A	A	100795530	1	1	139	0	1	0	0	0	0	0	0	0	1791	957	33	4		4	C14orf68	14	100795530	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	22888	100795530	6554010	232	122017											
MAGEL2	54551	broad.mit.edu	37	chr15	23889141	23889141	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatctctgctacacctatTagcggggagggggcctgctg	15	10	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23889141	C	C	23889141	2	2	139	1	0	0	0	0	0	0	0	1	9281	1761	61	5		5	MAGEL2	15	23889141	Silent	SNP	T	TCGA-49-4506-01A-01D-1265-08		23889141	78642251	233	122018											
C15orf2	23742	broad.mit.edu	37	chr15	24921430	24921430	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccggcggtcaaggccaggaAgcccatcccagccactctcc	11	18	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24921430	T	T	24921430	3	4	139	1	0	0	0	0	1	0	0	0	1797	72	3	5	418	5	C15orf2	15	24921430	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	1032289	24921430	77609962	234	122019											
HERC2	8924	broad.mit.edu	37	chr15	28483142	28483142	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaaggatctttatatttatCcctaatgccccacaaaagac	4	10	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28483142	T	T	28483142	1	4	139	0	1	0	0	0	0	0	0	0	7125	870	30	4		4	HERC2	15	28483142	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	3561712	28483142	74048250	235	122020											
CEP152	22995	broad.mit.edu	37	chr15	49054774	49054774	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttacttggtcagtttggctGccacaatctaaggtcttctt	9	9	4	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49054774	A	A	49054774	2	1	139	1	0	0	0	0	0	0	0	1	3278	1306	46	4		4	CEP152	15	49054774	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	20571632	49054774	53476618	236	122021											
CEP152	22995	broad.mit.edu	37	chr15	49080856	49080856	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccaatatcactggcttTtaagtttcactcacctcaca	4	14	4	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49080856	C	C	49080856	1	2	139	0	1	0	0	0	0	0	0	0	3278	1856	64	5		5	CEP152	15	49080856	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	26082	49080856	53450536	237	122022											
DMXL2	23312	broad.mit.edu	37	chr15	51741321	51741321	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gactccagccccaatgtttcGaaatatggactgcttagcat	8	11	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51741321	A	A	51741321	4	1	139	1	0	0	0	0	0	1	0	0	4635	1066	37	4	143	4	DMXL2	15	51741321	Nonsense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	2660465	51741321	50790071	238	122023											
AQP9	366	broad.mit.edu	37	chr15	58467122	58467122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctctttcatagatggaCttatgtcctttgctggtgga	9	8	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58467122	A	A	58467122	3	1	139	1	0	0	0	0	1	0	0	0	835	565	20	3	396	3	AQP9	15	58467122	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	6725801	58467122	44064270	239	122024											
MYO1E	4643	broad.mit.edu	37	chr15	59517106	59517106	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcctgcagccaccatcccTaaggactttctatctctgct	5	16	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59517106	A	A	59517106	1	1	139	0	1	0	0	0	0	0	0	0	10166	1537	53	5		5	MYO1E	15	59517106	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	1049984	59517106	43014286	240	122025											
FSD2	123722	broad.mit.edu	37	chr15	83451732	83451732	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcaagtgtttccaagatctCgttgtaatgtgactcaaagt	9	7	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83451732	A	A	83451732	4	1	139	1	0	0	0	0	0	1	0	0	6131	893	31	3	1508	3	FSD2	15	83451732	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	23934626	83451732	19079660	241	122026											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84659933	84659933	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcgtggaggcagcccttGgagcaaacgtgacaatccga	13	11	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84659933	T	T	84659933	4	4	139	1	0	0	0	0	0	1	0	0	276	1349	47	2	4026	2	ADAMTSL3	15	84659933	Nonsense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	1208201	84659933	17871459	242	122027											
NTRK3	4916	broad.mit.edu	37	chr15	88423450	88423450	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaagttctgggctgagatAgctcttatgagccctccccc	9	14	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88423450	T	T	88423450	1	4	139	0	1	0	0	0	0	0	0	0	10803	435	15	5		5	NTRK3	15	88423450	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	3763517	88423450	14107942	243	122028											
FURIN	5045	broad.mit.edu	37	chr15	91423416	91423416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggagcacgctcaggcgcGgctcaccctgtcctataatc	11	15	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91423416	T	T	91423416	3	4	139	1	0	0	0	0	1	0	0	0	6159	1116	39	1	1515	1	FURIN	15	91423416	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	2999966	91423416	11107976	244	122029											
PIGQ	9091	broad.mit.edu	37	chr16	633678	633678	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgccaggctgctgtgggGgcgggagcagcctcagtgtc	17	12	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	633678	T	T	633678	1	4	139	0	1	0	0	0	0	0	0	0	11991	1247	43	2		2	PIGQ	16	633678	3'UTR	SNP	G	TCGA-49-4506-01A-01D-1265-08		633678	89721075	245	122030											
TPSD1	23430	broad.mit.edu	37	chr16	1306310	1306310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctccccagatgctgaGcctgctgctgctggcgctgc	12	16	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1306310	T	T	1306310	3	4	139	1	0	0	0	0	1	0	0	0	16549	971	34	3	31	3	TPSD1	16	1306310	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	672632	1306310	89048443	246	122031											
TSC2	7249	broad.mit.edu	37	chr16	2127677	2127677	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaggagagctctgcagcCgaggccttccggtgccgcag	14	13	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2127677	A	A	2127677	2	1	139	1	0	0	0	0	0	0	0	1	16731	639	23	1		1	TSC2	16	2127677	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	821367	2127677	88227076	247	122032											
C16orf72	29035	broad.mit.edu	37	chr16	9197114	9197114	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggaagccatagctctgcAtggtaaagccgtttaaacat	10	10	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9197114	C	C	9197114	3	2	139	1	0	0	0	0	1	0	0	0	1845	217	8	5	591	5	C16orf72	16	9197114	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	7069437	9197114	81157639	248	122033											
MYH11	4629	broad.mit.edu	37	chr16	15814806	15814806	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttccagccgcagtttggCgtcctccgtggcttgcagct	12	14	0	0	rs138863103		TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15814806	T	T	15814806	3	4	139	1	0	0	0	0	1	0	0	0	10125	768	27	4	1308	4	MYH11	16	15814806	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	6617692	15814806	74539947	249	122034											
XYLT1	64131	broad.mit.edu	37	chr16	17211812	17211812	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagttgcggaatagcctctCcttggcatcccagtcagtgc	10	12	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17211812	A	A	17211812	4	1	139	1	0	0	0	0	0	1	0	0	17590	864	30	3	639	3	XYLT1	16	17211812	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	1397006	17211812	73142941	250	122035											
IL4R	3566	broad.mit.edu	37	chr16	27375204	27375204	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggactagggcttatccatGcctgggaaatgccacctcct	11	12	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27375204	A	A	27375204	1	1	139	0	1	0	0	0	0	0	0	0	7768	1334	46	4		4	IL4R	16	27375204	3'UTR	SNP	G	TCGA-49-4506-01A-01D-1265-08	10163392	27375204	62979549	251	122036											
IL21R	50615	broad.mit.edu	37	chr16	27457426	27457426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtgagctcccgaccctGtgatgagctcctcggagccc	12	15	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27457426	T	T	27457426	1	4	139	0	1	0	0	0	0	0	0	0	7741	1392	48	3		3	IL21R	16	27457426	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	82222	27457426	62897327	252	122037											
GTF3C1	2975	broad.mit.edu	37	chr16	27481857	27481857	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctaaagctctctgtcccaTcccagatgaaggtgctgcat	8	14	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27481857	A	A	27481857	1	1	139	0	1	0	0	0	0	0	0	0	6937	1450	50	5		5	GTF3C1	16	27481857	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	24431	27481857	62872896	253	122038											
ITGAD	3681	broad.mit.edu	37	chr16	31429992	31429992	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcacatctaagctctcctGttttgggatgcctttgtggg	11	9	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31429992	C	C	31429992	1	2	139	0	1	0	0	0	0	0	0	0	7954	1392	48	4		4	ITGAD	16	31429992	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	3948135	31429992	58924761	254	122039											
WWP2	11060	broad.mit.edu	37	chr16	69973683	69973683	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctgcaggcaggcatgGtggggctatcagagccctgg	16	12	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69973683	C	C	69973683	1	2	139	0	1	0	0	0	0	0	0	0	17543	1276	44	4		4	WWP2	16	69973683	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	38543691	69973683	20381070	255	122040											
MTSS1L	92154	broad.mit.edu	37	chr16	70713249	70713249	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaggaaggatgtgggaggaGaggaggagagacagagaaag	20	2	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70713249	A	A	70713249	1	1	139	0	1	0	0	0	0	0	0	0	10057	957	33	4		4	MTSS1L	16	70713249	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	739566	70713249	19641504	256	122041											
KIAA0664	23277	broad.mit.edu	37	chr17	2595023	2595023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggggctcccgcgctcgccGggccggaggggccgctccgc	19	18	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2595023	A	A	2595023	1	1	139	0	1	0	0	0	0	0	0	0	8259	1131	39	4		4	KIAA0664	17	2595023	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08		2595023	78600187	257	122042											
P2RX5	5026	broad.mit.edu	37	chr17	3593336	3593336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcgaccaaggcccacccGtggcccccagtagccaagcc	9	19	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3593336	T	T	3593336	1	4	139	0	1	0	0	0	0	0	0	0	11437	1160	40	3		3	P2RX5	17	3593336	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	998313	3593336	77601874	258	122043											
TNK1	8711	broad.mit.edu	37	chr17	7291918	7291918	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcttccctggcccaaaagAaaacccccacacaatcaccc	5	18	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7291918	C	C	7291918	3	2	139	1	0	0	0	0	1	0	0	0	16440	243	9	5	1709	5	TNK1	17	7291918	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	3698582	7291918	73903292	259	122044											
MYH4	4622	broad.mit.edu	37	chr17	10366823	10366823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgacaccacatgcacacaAgaatcagtgctgatcctcaa	6	12	2	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10366823	G	G	10366823	1	3	139	0	1	0	0	0	0	0	0	0	10131	87	3	5		5	MYH4	17	10366823	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	3074905	10366823	70828387	260	122045											
EVI2A	2123	broad.mit.edu	37	chr17	29645432	29645432	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttgggtcctgtgagctgTtttgttcttttccaagtgtc	12	7	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29645432	G	G	29645432	3	3	139	1	0	0	0	0	1	0	0	0	5329	1722	60	5	114	5	EVI2A	17	29645432	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	19278609	29645432	51549778	261	122046											
SLFN13	146857	broad.mit.edu	37	chr17	33769261	33769261	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcatgctgtaaagacagctCcttccagagggactctggag	11	10	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33769261	A	A	33769261	4	1	139	1	0	0	0	0	0	1	0	0	14850	864	30	3	1458	3	SLFN13	17	33769261	Nonsense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	4123829	33769261	47425949	262	122047											
SOCS7	30837	broad.mit.edu	37	chr17	36520471	36520471	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatagaatttaaaaattgaCttcctggtgttggggtgatt	11	3	0	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36520471	G	G	36520471	1	3	139	0	1	0	0	0	0	0	0	0	15033	580	20	4		4	SOCS7	17	36520471	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	2751210	36520471	44674739	263	122048											
KRT16	3868	broad.mit.edu	37	chr17	39768924	39768924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggaggaggtgaactggCggctgcaggtggtcatggtg	20	6	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39768924	A	A	39768924	3	1	139	1	0	0	0	0	1	0	0	0	8524	768	27	3	1436	3	KRT16	17	39768924	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	3248453	39768924	41426286	264	122049											
HOXB8	3218	broad.mit.edu	37	chr17	46690610	46690611	+	Frame_Shift_Ins	INS	-	A	A													gccctcgtccgccgcctctgINSgggcccgctccagcttctgt							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46690611	A	A	46690610	7	5	139	1	0	1	1	0	0	0	0	0	7374	1348	47	0	49	0	HOXB8	17	46690610	Frame_Shift_Ins	INS	-	TCGA-49-4506-01A-01D-1265-08	6921686	46690610	34504600	265	122050											
TEX14	56155	broad.mit.edu	37	chr17	56738330	56738330	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatttcctgatcaatgctctCaatctcttctaagctgatat	4	10	4	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56738330	A	A	56738330	1	1	139	0	1	0	0	0	0	0	0	0	15900	841	29	3		3	TEX14	17	56738330	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	10047720	56738330	24456880	266	122051											
GDPD1	284161	broad.mit.edu	37	chr17	57311875	57311875	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggagaaaatttggagaaTacaatggcagcctttcagca	11	7	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57311875	C	C	57311875	2	2	139	1	0	0	0	0	0	0	0	1	6387	1403	49	5		5	GDPD1	17	57311875	Silent	SNP	T	TCGA-49-4506-01A-01D-1265-08	573545	57311875	23883335	267	122052											
KCNH6	81033	broad.mit.edu	37	chr17	61619850	61619850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgcccaggcagcctgcctGgcctgagggcacccatctga	12	15	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61619850	T	T	61619850	1	4	139	0	1	0	0	0	0	0	0	0	8106	1363	47	2		2	KCNH6	17	61619850	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	4307975	61619850	19575360	268	122053											
RGS9	8787	broad.mit.edu	37	chr17	63133675	63133675	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggatgacaatccgacaccAaggccagcagtacaggccga	11	13	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63133675	G	G	63133675	3	3	139	1	0	0	0	0	1	0	0	0	13422	130	5	5	19	5	RGS9	17	63133675	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	1513825	63133675	18061535	269	122054											
RNF157	114804	broad.mit.edu	37	chr17	74150276	74150276	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgagcagcgccaccacgTcataccggtacccttttctt	7	15	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74150276	C	C	74150276	1	2	139	0	1	0	0	0	0	0	0	0	13565	1682	58	5		5	RNF157	17	74150276	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	11016601	74150276	7044934	270	122055											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851640	14851640	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaggaaaataaatactttGaggacattaagattttacaa	7	3	0	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14851640	T	T	14851640	4	4	139	1	0	0	0	0	0	1	0	0	659	1291	45	3	3482	3	ANKRD30B	18	14851640	Nonsense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08		14851640	63225608	271	122056											
DSG3	1830	broad.mit.edu	37	chr18	29038932	29038932	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaacagaggccttatttatAcaagttttaatagtatgaaa	6	6	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29038932	G	G	29038932	1	3	139	0	1	0	0	0	0	0	0	0	4818	406	14	5		5	DSG3	18	29038932	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	14187292	29038932	49038316	272	122057											
SKA1	220134	broad.mit.edu	37	chr18	47911800	47911800	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataataaagcttaattataTtaattgtaatatgctatgtt	4	2	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47911800	C	C	47911800	1	2	139	0	1	0	0	0	0	0	0	0	14465	1508	52	5		5	SKA1	18	47911800	Intron	SNP	T	TCGA-49-4506-01A-01D-1265-08	18872868	47911800	30165448	273	122058											
SERPINB7	8710	broad.mit.edu	37	chr18	61460494	61460494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggctttttgctgaaaaaGtgtatggctttcataaggta	11	4	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61460494	T	T	61460494	3	4	139	1	0	0	0	0	1	0	0	0	14219	1029	36	3	329	3	SERPINB7	18	61460494	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	13548694	61460494	16616754	274	122059											
RTTN	25914	broad.mit.edu	37	chr18	67727182	67727182	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaagaggctgcacattgctGaaagaagagatggagtaaca	12	7	0	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67727182	A	A	67727182	3	1	139	1	0	0	0	0	1	0	0	0	13848	1294	45	4	1892	4	RTTN	18	67727182	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	6266688	67727182	10350066	275	122060											
SALL3	27164	broad.mit.edu	37	chr18	76754914	76754914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagggagcggggtaagtgtCccagcactgtgtgtggtgtc	18	8	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76754914	A	A	76754914	3	1	139	1	0	0	0	0	1	0	0	0	13923	855	30	3	2929	3	SALL3	18	76754914	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	9027732	76754914	1322334	276	122061											
PALM	5064	broad.mit.edu	37	chr19	746366	746366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgaactcatccacaaagCggacgaggtcacgctgagcg	13	12	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	746366	A	A	746366	3	1	139	1	0	0	0	0	1	0	0	0	11502	768	27	3	750	3	PALM	19	746366	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08		746366	58382617	277	122062											
TMEM146	257062	broad.mit.edu	37	chr19	5759015	5759015	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccatgtcccctccaacacCccatctctcccaatgtcctg	3	22	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5759015	T	T	5759015	1	4	139	0	1	0	0	0	0	0	0	0	16183	638	22	4		4	TMEM146	19	5759015	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	5012649	5759015	53369968	278	122063											
EMR1	2015	broad.mit.edu	37	chr19	6897702	6897702	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatatatagttgcttatatCtttttctatccctttacttt	2	7	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6897702	A	A	6897702	1	1	139	0	1	0	0	0	0	0	0	0	5146	928	32	3		3	EMR1	19	6897702	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	1138687	6897702	52231281	279	122064											
COL5A3	50509	broad.mit.edu	37	chr19	10102467	10102467	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagacagttcaaacctgGgacccatggtttccctgctg	11	11	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10102467	A	A	10102467	2	1	139	1	0	0	0	0	0	0	0	1	3730	1219	43	4		4	COL5A3	19	10102467	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	3204765	10102467	49026516	280	122065											
KEAP1	9817	broad.mit.edu	37	chr19	10600347	10600347	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccgcttcggatggtgttcAttgctgtgatcattcgccac	10	13	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10600347	T	T	10600347	3	4	139	1	0	0	0	0	1	0	0	0	8211	217	8	5	378	5	KEAP1	19	10600347	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	497880	10600347	48528636	281	122066											
KRI1	65095	broad.mit.edu	37	chr19	10668512	10668512	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttgcgcttcttcttgccCgtcaagggggcctcgcgctt	12	14	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10668512	A	A	10668512	2	1	139	1	0	0	0	0	0	0	0	1	8515	639	23	1		1	KRI1	19	10668512	Silent	SNP	C	TCGA-49-4506-01A-01D-1265-08	68165	10668512	48460471	282	122067											
LDLR	3949	broad.mit.edu	37	chr19	11242055	11242077	+	3'UTR	DEL	ATTCAAAGACAGAGAAGACCAAA	-	-													gacctcgccggccttgttttAttcaaagacagagaagacca							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11242077	-	-	11242055	6	5	139	0	1	1	0	1	0	0	0	0	8776	464	16	0		0	LDLR	19	11242055	3'UTR	DEL	ATTCAAAGACAGAGAAGACCAAA	TCGA-49-4506-01A-01D-1265-08	573543	11242055	47886928	283	122068											
EMR2	30817	broad.mit.edu	37	chr19	14854511	14854511	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggtaggccatgacccGggcagccggacccacctgca	14	14	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14854511	T	T	14854511	2	4	139	1	0	0	0	0	0	0	0	1	5147	1115	39	1		1	EMR2	19	14854511	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	3612456	14854511	44274472	284	122069											
C19orf42	79086	broad.mit.edu	37	chr19	16770305	16770305	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttcaatgggacatagagtCctcagccccctgacccccag	8	16	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16770305	A	A	16770305	1	1	139	0	1	0	0	0	0	0	0	0	1944	870	30	3		3	C19orf42	19	16770305	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	1915794	16770305	42358678	285	122070											
NCAN	1463	broad.mit.edu	37	chr19	19360473	19360473	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggatgagccctcgcgtctgGcctctttcctctactttctc	9	15	4	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19360473	C	C	19360473	1	2	139	0	1	0	0	0	0	0	0	0	10299	1218	42	4		4	NCAN	19	19360473	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	2590168	19360473	39768510	286	122071											
KIAA0892	23383	broad.mit.edu	37	chr19	19449665	19449665	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttttagcaactgcacacGcttgagaaggacctggtgtc	10	11	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19449665	T	T	19449665	2	4	139	1	0	0	0	0	0	0	0	1	8266	1074	38	3		3	KIAA0892	19	19449665	Silent	SNP	G	TCGA-49-4506-01A-01D-1265-08	89192	19449665	39679318	287	122072											
CLC	1178	broad.mit.edu	37	chr19	40225186	40225186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttcttgtggggcacacaCaagacacacacacaagtctc	7	14	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40225186	T	T	40225186	1	4	139	0	1	0	0	0	0	0	0	0	3487	493	17	4		4	CLC	19	40225186	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	20775521	40225186	18903797	288	122073											
ZNF160	90338	broad.mit.edu	37	chr19	53578976	53578976	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatctgtgtgctttgtagCatcttctataataaatgggt	8	6	4	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53578976	T	T	53578976	1	4	139	0	1	0	0	0	0	0	0	0	17865	725	25	4		4	ZNF160	19	53578976	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	13353790	53578976	5550007	289	122074											
NLRP13	126204	broad.mit.edu	37	chr19	56424482	56424482	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccaacccctgccctccccAccaagactatcgtctgggcc	6	21	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56424482	T	T	56424482	3	4	139	1	0	0	0	0	1	0	0	0	10570	159	6	5	2456	5	NLRP13	19	56424482	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	2845506	56424482	2704501	290	122075											
HAO1	54363	broad.mit.edu	37	chr20	7866243	7866243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacctttctccccctaacCaagtgaaaagatacagagtg	6	12	1	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7866243	A	A	7866243	1	1	139	0	1	0	0	0	0	0	0	0	7017	609	21	2		2	HAO1	20	7866243	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08		7866243	55159277	291	122076											
PLCB1	23236	broad.mit.edu	37	chr20	8755426	8755426	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcccttataggaaactttGgatacttttggataactaaa	6	7	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8755426	C	C	8755426	1	2	139	0	1	0	0	0	0	0	0	0	12122	1363	47	4		4	PLCB1	20	8755426	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	889183	8755426	54270094	292	122077											
SNAP25	6616	broad.mit.edu	37	chr20	10279847	10279847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgacagatttccactatGctttgggtccttggtattca	10	9	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10279847	T	T	10279847	1	4	139	0	1	0	0	0	0	0	0	0	14944	1334	46	3		3	SNAP25	20	10279847	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	1524421	10279847	52745673	293	122078											
TPX2	22974	broad.mit.edu	37	chr20	30363618	30363618	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtagattcttttgagtcActgggtgcctttctcctctc	8	12	4	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30363618	T	T	30363618	1	4	139	0	1	0	0	0	0	0	0	0	16556	174	6	5		5	TPX2	20	30363618	Intron	SNP	A	TCGA-49-4506-01A-01D-1265-08	20083771	30363618	32661902	294	122079											
ZNF341	84905	broad.mit.edu	37	chr20	32369301	32369301	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctctcaccataggacacGcaggcagggctcaggggctg	13	14	3	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32369301	T	T	32369301	1	4	139	0	1	0	0	0	0	0	0	0	17983	1102	38	3		3	ZNF341	20	32369301	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	2005683	32369301	30656219	295	122080											
CASS4	57091	broad.mit.edu	37	chr20	55012296	55012297	+	Missense_Mutation	DNP	TG	CT	CT													tttcagcagaggggacatccTgaccattctggagcaacacg							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	55012297	CT	CT	55012296	3	2	139	1	0	0	0	0	1	0	0	0	2709	1580	55	5	119	5	CASS4	20	55012296	Missense_Mutation	DNP	TG	TCGA-49-4506-01A-01D-1265-08	22642995	55012296	8013224	296	122081											
ZNF831	128611	broad.mit.edu	37	chr20	57768653	57768653	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcccagaagcaggatgCcgatcccggggaggtgccag	15	12	1	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57768653	T	T	57768653	3	4	139	1	0	0	0	0	1	0	0	0	18314	739	26	4	2581	4	ZNF831	20	57768653	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	2756357	57768653	5256867	297	122082											
PRIC285	85441	broad.mit.edu	37	chr20	62193361	62193361	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccagagaataggagattGtagcccaccctgtgggtccc	12	12	0	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62193361	A	A	62193361	1	1	139	0	1	0	0	0	0	0	0	0	12591	1392	48	4		4	PRIC285	20	62193361	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	4424708	62193361	832159	298	122083											
ZBTB46	140685	broad.mit.edu	37	chr20	62422029	62422029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagacgtcgcacaggacgcCgtgctgcctctgctcgttga	13	14	1	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62422029	A	A	62422029	3	1	139	1	0	0	0	0	1	0	0	0	17673	652	23	1	1703	1	ZBTB46	20	62422029	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	228668	62422029	603491	299	122084											
CRYZL1	9946	broad.mit.edu	37	chr21	34974653	34974653	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagctattgtaccaaatgccTgtgtagaaaaaaatatacag	7	6	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34974653	A	A	34974653	5	1	139	1	0	0	0	0	0	0	1	0	3955	1594	55	5	609	5	CRYZL1	21	34974653	Splice_Site	SNP	T	TCGA-49-4506-01A-01D-1265-08		34974653	13155242	300	122085											
SIK1	150094	broad.mit.edu	37	chr21	44841183	44841184	+	Frame_Shift_Ins	INS	-	G	G													agacttccggggcggcatacINSggggggctcccacaccacgt							TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44841184	G	G	44841183	7	5	139	1	0	1	1	0	0	0	0	0	14430	523	19	0	1823	0	SIK1	21	44841183	Frame_Shift_Ins	INS	-	TCGA-49-4506-01A-01D-1265-08	9866530	44841183	3288712	301	122086											
EIF4ENIF1	56478	broad.mit.edu	37	chr22	31844264	31844264	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaccaagatggtatgtgtgCatcagggaggcattttcatt	12	6	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31844264	T	T	31844264	1	4	139	0	1	0	0	0	0	0	0	0	5077	725	25	4		4	EIF4ENIF1	22	31844264	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08		31844264	19460302	302	122087											
SSTR3	6753	broad.mit.edu	37	chr22	37603878	37603878	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagcagtcagctatttgCctgggggaaggaaaaacagc	14	8	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37603878	T	T	37603878	1	4	139	0	1	0	0	0	0	0	0	0	15317	753	26	4		4	SSTR3	22	37603878	5'UTR	SNP	C	TCGA-49-4506-01A-01D-1265-08	5759614	37603878	13700688	303	122088											
MXRA5	25878	broad.mit.edu	37	chrX	3238914	3238914	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcagggactctggttagTtgatgagaagcatgaactct	13	6	2	3			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3238914	C	C	3238914	2	2	139	1	0	0	0	0	0	0	0	1	10097	1722	60	5		5	MXRA5	23	3238914	Silent	SNP	T	TCGA-49-4506-01A-01D-1265-08		3238914	152031646	304	122089											
STS	412	broad.mit.edu	37	chrX	7267979	7267979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccaacttcaaccccgtgGgttccaacggatgctttgcc	8	17	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7267979	T	T	7267979	3	4	139	1	0	0	0	0	1	0	0	0	15450	1232	43	2	1467	2	STS	23	7267979	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	4029065	7267979	148002581	305	122090											
ARHGAP6	395	broad.mit.edu	37	chrX	11200129	11200129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacttgaactttgcaaaagGtaattcaattgaaagtcatg	7	5	2	2			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11200129	T	T	11200129	1	4	139	0	1	0	0	0	0	0	0	0	889	1276	44	3		3	ARHGAP6	23	11200129	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	3932150	11200129	144070431	306	122091											
FRMPD4	9758	broad.mit.edu	37	chrX	12632918	12632918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcccctctgaaggcaagCtgatcccgggagatcagatt	13	11	2	4			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12632918	A	A	12632918	3	1	139	1	0	0	0	0	1	0	0	0	6119	796	28	3	354	3	FRMPD4	23	12632918	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	1432789	12632918	142637642	307	122092											
SCML2	10389	broad.mit.edu	37	chrX	18264732	18264732	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatttggaatttaacttcaTggggactgctcttgggggat	13	6	2	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18264732	A	A	18264732	3	1	139	1	0	0	0	0	1	0	0	0	14023	1464	51	5	327	5	SCML2	23	18264732	Missense_Mutation	SNP	T	TCGA-49-4506-01A-01D-1265-08	5631814	18264732	137005828	308	122093											
CXorf22	170063	broad.mit.edu	37	chrX	35971801	35971801	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtccgtaggaagtaaagatgGatttttgagagatgatgact	13	3	0	5			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35971801	A	A	35971801	3	1	139	1	0	0	0	0	1	0	0	0	4135	1174	41	4	1165	4	CXorf22	23	35971801	Missense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	17707069	35971801	119298759	309	122094											
FAAH2	158584	broad.mit.edu	37	chrX	57419202	57419202	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaccagccccgatgctgGcatggatgttgcgaatgggc	14	10	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57419202	A	A	57419202	1	1	139	0	1	0	0	0	0	0	0	0	5400	1218	42	4		4	FAAH2	23	57419202	Intron	SNP	G	TCGA-49-4506-01A-01D-1265-08	21447401	57419202	97851358	310	122095											
IRS4	8471	broad.mit.edu	37	chrX	107977758	107977758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttcagagattttccaCgttcaccatcaccatcggat	5	12	4	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107977758	A	A	107977758	3	1	139	1	0	0	0	0	1	0	0	0	7912	536	19	3	1960	3	IRS4	23	107977758	Missense_Mutation	SNP	C	TCGA-49-4506-01A-01D-1265-08	50558556	107977758	47292802	311	122096											
DOCK11	139818	broad.mit.edu	37	chrX	117758501	117758501	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttcaataattatttttcaGaaccaacaagccaaaatagc	3	9	2	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117758501	T	T	117758501	5	4	139	1	0	0	0	0	0	0	1	0	4726	956	33	3	3597	3	DOCK11	23	117758501	Splice_Site	SNP	G	TCGA-49-4506-01A-01D-1265-08	9780743	117758501	37512059	312	122097											
MST4	51765	broad.mit.edu	37	chrX	131197485	131197485	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaaattatggataataatgGaatacctgggcggtggttca	11	5	1	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131197485	T	T	131197485	4	4	139	1	0	0	0	0	0	1	0	0	9986	1175	41	3	308	3	MST4	23	131197485	Nonsense_Mutation	SNP	G	TCGA-49-4506-01A-01D-1265-08	13438984	131197485	24073075	313	122098											
L1CAM	3897	broad.mit.edu	37	chrX	153129175	153129175	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacttgcctgttgcccCaaccccggcctgggaggatg	11	17	0	0			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153129175	T	T	153129175	1	4	139	0	1	0	0	0	0	0	0	0	8660	609	21	4		4	L1CAM	23	153129175	Intron	SNP	C	TCGA-49-4506-01A-01D-1265-08	21931690	153129175	2141385	314	122099											
RENBP	5973	broad.mit.edu	37	chrX	153209788	153209788	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtcgtgggagtgctccAtccagaaagccaccacgcgg	13	14	0	1			TCGA-49-4506-01A-01D-1265-08	TCGA-49-4506-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153209788	C	C	153209788	3	2	139	1	0	0	0	0	1	0	0	0	13333	217	8	5	1213	5	RENBP	23	153209788	Missense_Mutation	SNP	A	TCGA-49-4506-01A-01D-1265-08	80613	153209788	2060772	315	122100											
ATAD3A	55210	broad.mit.edu	37	chr1	1455541	1455541	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaccgtggagcgggagatgGagctgcggcacaagaatgag	17	9	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1455541	T	T	1455541	4	4	140	1	0	0	0	0	0	1	0	0	1077	1175	41	3	701	3	ATAD3A	1	1455541	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		1455541	247795080	1	122101											
GNB1	2782	broad.mit.edu	37	chr1	1722149	1722149	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacagtgagcctctgcactGttactttaaaaacgtaaatt	6	10	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1722149	A	A	1722149	1	1	140	0	1	0	0	0	0	0	0	0	6579	1392	48	4		4	GNB1	1	1722149	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	266608	1722149	247528472	2	122102											
TNFRSF8	943	broad.mit.edu	37	chr1	12198222	12198222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaaaaaaaggggcctcCcagttcagagactggtgggg	14	7	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12198222	A	A	12198222	1	1	140	0	1	0	0	0	0	0	0	0	16422	638	22	2		2	TNFRSF8	1	12198222	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	10476073	12198222	237052399	3	122103											
PRAMEF18	391003	broad.mit.edu	37	chr1	13695841	13695841	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtggtgaggttggagcagCggctcagggcaggcaggatg	20	6	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13695841	T	T	13695841	3	4	140	1	0	0	0	0	1	0	0	0	12535	768	27	4	1771	4	PRAMEF18	1	13695841	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1497619	13695841	235554780	4	122104											
KLHDC7A	127707	broad.mit.edu	37	chr1	18809312	18809312	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acccccgcctggaccgctggGactttgccccgccgctcccc	10	22	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18809312	C	C	18809312	3	2	140	1	0	0	0	0	1	0	0	0	8431	1174	41	4	1839	4	KLHDC7A	1	18809312	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	5113471	18809312	230441309	5	122105											
LUZP1	7798	broad.mit.edu	37	chr1	23417973	23417973	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctaaagatttcaagtctcGcctactcttccaggcattcc	5	13	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23417973	A	A	23417973	4	1	140	1	0	0	0	0	0	1	0	0	9173	1095	38	4	456	4	LUZP1	1	23417973	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	4608661	23417973	225832648	6	122106											
GALE	2582	broad.mit.edu	37	chr1	24125283	24125286	+	Intron	DEL	CAGA	-	-													ctgtgttcccagggactagcCagacacacattccccgcccg							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24125286	-	-	24125283	6	5	140	0	1	1	0	1	0	0	0	0	6264	609	21	0		0	GALE	1	24125283	Intron	DEL	CAGA	TCGA-49-4507-01A-01D-1265-08	707310	24125283	225125338	7	122107											
SLC30A2	7780	broad.mit.edu	37	chr1	26369043	26369043	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgtcccagctctgaccttGaagtataaaatataggctgc	9	9	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26369043	C	C	26369043	3	2	140	1	0	0	0	0	1	0	0	0	14669	1281	45	4	405	4	SLC30A2	1	26369043	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	2243760	26369043	222881578	8	122108											
FAM76A	199870	broad.mit.edu	37	chr1	28081716	28081716	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaatttagcttctccccaGacctggctctggactcacca	6	14	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28081716	T	T	28081716	3	4	140	1	0	0	0	0	1	0	0	0	5677	942	33	3	742	3	FAM76A	1	28081716	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	1712673	28081716	221168905	9	122109											
YTHDF2	51441	broad.mit.edu	37	chr1	29069062	29069062	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcttatggacagctgagcAacggagagccccacttccta	9	13	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29069062	T	T	29069062	3	4	140	1	0	0	0	0	1	0	0	0	17626	130	5	5	294	5	YTHDF2	1	29069062	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	987346	29069062	220181559	10	122110											
MACF1	23499	broad.mit.edu	37	chr1	39838415	39838415	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtcttcccctgcaacctGacctgtcaccccttttgcta	6	17	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39838415	T	T	39838415	1	4	140	0	1	0	0	0	0	0	0	0	9232	1305	45	3		3	MACF1	1	39838415	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	10769353	39838415	209412206	11	122111											
CAP1	10487	broad.mit.edu	37	chr1	40527403	40527403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagctgattcttctttctgGcaggcggagatggtccacac	11	10	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40527403	T	T	40527403	1	4	140	0	1	0	0	0	0	0	0	0	2645	1218	42	3		3	CAP1	1	40527403	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	688988	40527403	208723218	12	122112											
SLFNL1	200172	broad.mit.edu	37	chr1	41482042	41482042	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggggaaaagtcaggcccctCggcctgctgccaccttcaac	11	15	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41482042	T	T	41482042	1	4	140	0	1	0	0	0	0	0	0	0	14852	899	31	4		4	SLFNL1	1	41482042	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	954639	41482042	207768579	13	122113											
GUCA2B	2981	broad.mit.edu	37	chr1	42621102	42621102	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctctagacgttcctgctCccagtctgtggaagatgccg	10	14	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42621102	A	A	42621102	1	1	140	0	1	0	0	0	0	0	0	0	6957	870	30	3		3	GUCA2B	1	42621102	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1139060	42621102	206629519	14	122114											
SLC6A9	6536	broad.mit.edu	37	chr1	44463634	44463634	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaatggccacggcccagcCtgggtactggtagtggttgt	15	11	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44463634	G	G	44463634	3	3	140	1	0	0	0	0	1	0	0	0	14805	681	24	4	309	4	SLC6A9	1	44463634	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1842532	44463634	204786987	15	122115											
AK5	26289	broad.mit.edu	37	chr1	77752671	77752671	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaagcccgaagatccagtaGaatacttggaaagttgttta	9	7	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77752671	T	T	77752671	4	4	140	1	0	0	0	0	0	1	0	0	443	943	33	3	112	3	AK5	1	77752671	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	33289037	77752671	171497950	16	122116											
COL24A1	255631	broad.mit.edu	37	chr1	86578303	86578303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgtggccctggtatgcCctgcaagtaacgaaaaaagt	10	10	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86578303	A	A	86578303	3	1	140	1	0	0	0	0	1	0	0	0	3715	637	22	2	3822	2	COL24A1	1	86578303	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	8825632	86578303	162672318	17	122117											
LPPR4	9890	broad.mit.edu	37	chr1	99771138	99771138	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtactagtcaatggtgtAtaggaagcatatacctatgt	9	5	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99771138	G	G	99771138	1	3	140	0	1	0	0	0	0	0	0	0	9014	464	16	5		5	LPPR4	1	99771138	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	13192835	99771138	149479483	18	122118											
VCAM1	7412	broad.mit.edu	37	chr1	101188709	101188709	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttactgaaaggagatcatctCatgaagagtcaggaatttct	9	6	4	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101188709	G	G	101188709	2	3	140	1	0	0	0	0	0	0	0	1	17264	813	29	4		4	VCAM1	1	101188709	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	1417571	101188709	148061912	19	122119											
VCAM1	7412	broad.mit.edu	37	chr1	101190142	101190143	+	Intron	DNP	TG	AA	AA													cctctgttgcactgggatgaTgcttagcaattgctaatatt							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	101190143	AA	AA	101190142	1	1	140	0	1	0	0	0	0	0	0	0	17264	1479	51	5		5	VCAM1	1	101190142	Intron	DNP	TG	TCGA-49-4507-01A-01D-1265-08	1433	101190142	148060479	20	122120											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150532710	150532710	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacggttttctgtgccacCatcggtcacccattgatcgg	9	13	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150532710	T	T	150532710	1	4	140	0	1	0	0	0	0	0	0	0	277	609	21	4		4	ADAMTSL4	1	150532710	3'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08	49342568	150532710	98717911	21	122121											
PIP5K1A	8394	broad.mit.edu	37	chr1	151219506	151219506	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaggatcactgatggccTggagcaggaagttaattgtc	13	6	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151219506	C	C	151219506	1	2	140	0	1	0	0	0	0	0	0	0	12034	1595	55	5		5	PIP5K1A	1	151219506	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	686796	151219506	98031115	22	122122											
TDRKH	11022	broad.mit.edu	37	chr1	151747048	151747048	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggcaatgccagcgaggCtcaaaagaaaaatggacctc	11	10	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151747048	A	A	151747048	1	1	140	0	1	0	0	0	0	0	0	0	15859	812	28	3		3	TDRKH	1	151747048	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	527542	151747048	97503573	23	122123											
PGLYRP4	57115	broad.mit.edu	37	chr1	153317566	153317566	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacccagaaaatgaggaaaAgggatgagaagggacaggag	15	5	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153317566	G	G	153317566	1	3	140	0	1	0	0	0	0	0	0	0	11891	87	3	5		5	PGLYRP4	1	153317566	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	1570518	153317566	95933055	24	122124											
SYT11	23208	broad.mit.edu	37	chr1	155829701	155829701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccttcaaaatgccagccCcactaaaatcgggcctgtgg	10	13	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155829701	A	A	155829701	1	1	140	0	1	0	0	0	0	0	0	0	15586	638	22	2		2	SYT11	1	155829701	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2512135	155829701	93420920	25	122125											
SEMA4A	64218	broad.mit.edu	37	chr1	156130171	156130171	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccccagtcagaggcaggTctgtggagggcagaggaacc	16	11	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156130171	G	G	156130171	1	3	140	0	1	0	0	0	0	0	0	0	14144	1682	58	5		5	SEMA4A	1	156130171	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	300470	156130171	93120450	26	122126											
INSRR	3645	broad.mit.edu	37	chr1	156811127	156811127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagccagaatcatggggccGggtgggggagggttgtaggt	21	5	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156811127	T	T	156811127	1	4	140	0	1	0	0	0	0	0	0	0	7844	1131	39	1		1	INSRR	1	156811127	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	680956	156811127	92439494	27	122127											
OR10T2	128360	broad.mit.edu	37	chr1	158368421	158368421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtaagggagtaaccactGtgtaggtcactgccaccaac	10	10	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158368421	T	T	158368421	3	4	140	1	0	0	0	0	1	0	0	0	11013	1377	48	3	110	3	OR10T2	1	158368421	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	1557294	158368421	90882200	28	122128											
OR10K2	391107	broad.mit.edu	37	chr1	158389737	158389737	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttacaacagggaaattgttCttctcacaattttacaaaga	5	7	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158389737	A	A	158389737	3	1	140	1	0	0	0	0	1	0	0	0	11008	913	32	3	20	3	OR10K2	1	158389737	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	21316	158389737	90860884	29	122129											
SPTA1	6708	broad.mit.edu	37	chr1	158585067	158585067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaagctggtagagctggtCccactgctgagccaatccaa	10	14	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158585067	A	A	158585067	3	1	140	1	0	0	0	0	1	0	0	0	15234	855	30	3	552	3	SPTA1	1	158585067	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	195330	158585067	90665554	30	122130											
SPTA1	6708	broad.mit.edu	37	chr1	158654955	158654955	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagatattgactttctccatGatccacttccccagatcatc	4	13	2	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158654955	T	T	158654955	2	4	140	1	0	0	0	0	0	0	0	1	15234	1280	45	3		3	SPTA1	1	158654955	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	69888	158654955	90595666	31	122131											
TAGLN2	8407	broad.mit.edu	37	chr1	159890120	159890120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggggcccggctctcacCgtgccatccttgagccagtt	12	15	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159890120	A	A	159890120	2	1	140	1	0	0	0	0	0	0	0	1	15658	666	23	1		1	TAGLN2	1	159890120	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	1235165	159890120	89360501	32	122132											
NHLH1	4807	broad.mit.edu	37	chr1	160340482	160340482	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcccagagggaggggtgGggaggggatcctgatctcac	18	9	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160340482	A	A	160340482	1	1	140	0	1	0	0	0	0	0	0	0	10498	1247	43	4		4	NHLH1	1	160340482	5'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	450362	160340482	88910139	33	122133											
FCGR3A	2214	broad.mit.edu	37	chr1	161518298	161518298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcgtcgactgtggcagCgtcaatgaagtagctcgagg	14	9	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161518298	A	A	161518298	3	1	140	1	0	0	0	0	1	0	0	0	5841	768	27	3	544	3	FCGR3A	1	161518298	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1177816	161518298	87732323	34	122134											
FCGR3B	2215	broad.mit.edu	37	chr1	161599655	161599655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcgttgactgtggcagCgtcaatgaagtagctcgagg	14	8	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161599655	A	A	161599655	3	1	140	1	0	0	0	0	1	0	0	0	5842	768	27	3	481	3	FCGR3B	1	161599655	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	81357	161599655	87650966	35	122135											
ATF6	22926	broad.mit.edu	37	chr1	161829921	161829921	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttaacaaatttaagtatAgaatgaaccagtataggaag	8	3	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161829921	G	G	161829921	1	3	140	0	1	0	0	0	0	0	0	0	1088	435	15	5		5	ATF6	1	161829921	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	230266	161829921	87420700	36	122136											
DDR2	4921	broad.mit.edu	37	chr1	162740216	162740216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccaactcgacttacgatcGcatctttccccttcgccctg	6	17	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162740216	A	A	162740216	3	1	140	1	0	0	0	0	1	0	0	0	4370	1087	38	4	1456	4	DDR2	1	162740216	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	910295	162740216	86510405	37	122137											
BLZF1	8548	broad.mit.edu	37	chr1	169356319	169356319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaccaaccaccttacttGctacaaagaaaaatattgga	4	11	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169356319	T	T	169356319	3	4	140	1	0	0	0	0	1	0	0	0	1459	1319	46	3	1124	3	BLZF1	1	169356319	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	6616103	169356319	79894302	38	122138											
F5	2153	broad.mit.edu	37	chr1	169526011	169526011	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatgatggttctgctccagGacctggccgttgaaatgaat	11	8	1	3	rs144375278	by1000genomes	TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169526011	T	T	169526011	2	4	140	1	0	0	0	0	0	0	0	1	5391	1161	41	3		3	F5	1	169526011	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	169692	169526011	79724610	39	122139											
SELE	6401	broad.mit.edu	37	chr1	169696746	169696746	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgcttaaaagtcaacaatGaatgtaaagtgtaagcgcta	8	6	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169696746	A	A	169696746	1	1	140	0	1	0	0	0	0	0	0	0	14126	1305	45	4		4	SELE	1	169696746	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	170735	169696746	79553875	40	122140											
CENPL	91687	broad.mit.edu	37	chr1	173772116	173772116	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaacctttatttttccatcAgtatgtgctgaagctacaga	6	9	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173772116	C	C	173772116	2	2	140	1	0	0	0	0	0	0	0	1	3266	175	7	5		5	CENPL	1	173772116	Silent	SNP	A	TCGA-49-4507-01A-01D-1265-08	4075370	173772116	75478505	41	122141											
ASPM	259266	broad.mit.edu	37	chr1	197062239	197062239	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggataactgtagattttttAaattcaatatattttatcct	4	4	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197062239	T	T	197062239	3	4	140	1	0	0	0	0	1	0	0	0	1060	359	13	5	1228	5	ASPM	1	197062239	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	23290123	197062239	52188382	42	122142											
PIK3C2B	5287	broad.mit.edu	37	chr1	204434554	204434554	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatgaaaagactttctagtCactcgacatccaatgaaagg	8	8	2	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204434554	A	A	204434554	1	1	140	0	1	0	0	0	0	0	0	0	12005	841	29	3		3	PIK3C2B	1	204434554	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	7372315	204434554	44816067	43	122143											
C1orf116	79098	broad.mit.edu	37	chr1	207196009	207196010	+	Frame_Shift_Ins	INS	-	AC	AC													ggagctggtgggcttacttaINSagtggagtccaggctcatct							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	207196010	AC	AC	207196009	7	5	140	1	0	1	1	0	0	0	0	0	2009	372	13	0	709	0	C1orf116	1	207196009	Frame_Shift_Ins	INS	-	TCGA-49-4507-01A-01D-1265-08	2761455	207196009	42054612	44	122144											
PSEN2	5664	broad.mit.edu	37	chr1	227071533	227071534	+	Frame_Shift_Ins	INS	-	CA	CA													ggagcgaagcacgtgatcatINSgctgtttgtgcctgtcactc							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	227071534	CA	CA	227071533	7	5	140	1	0	1	1	0	0	0	0	0	12757	1464	51	0	275	0	PSEN2	1	227071533	Frame_Shift_Ins	INS	-	TCGA-49-4507-01A-01D-1265-08	19875524	227071533	22179088	45	122145											
GNPAT	8443	broad.mit.edu	37	chr1	231403468	231403468	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggacatgcatgcctttgtCactgaagttgcctacaaaat	9	9	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231403468	T	T	231403468	2	4	140	1	0	0	0	0	0	0	0	1	6605	813	29	4		4	GNPAT	1	231403468	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	4331935	231403468	17847153	46	122146											
PCNXL2	80003	broad.mit.edu	37	chr1	233394778	233394778	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggactgaattctcactcCcccacggctggaaagaaacg	9	13	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233394778	T	T	233394778	3	4	140	1	0	0	0	0	1	0	0	0	11686	623	22	4	5703	4	PCNXL2	1	233394778	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1991310	233394778	15855843	47	122147											
SLC35F3	148641	broad.mit.edu	37	chr1	234444774	234444774	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgcttaaaaaaaaaaaaActtgctataggaaataaatg	5	3	0	0	rs78125816		TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234444774	G	G	234444774	1	3	140	0	1	0	0	0	0	0	0	0	14704	58	2	5		5	SLC35F3	1	234444774	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	1049996	234444774	14805847	48	122148											
RBM34	23029	broad.mit.edu	37	chr1	235324699	235324699	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggagcaggtttgtcgccgtCggttggtggtcctcgccgtt	17	10	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235324699	A	A	235324699	1	1	140	0	1	0	0	0	0	0	0	0	13239	899	31	3		3	RBM34	1	235324699	5'Flank	SNP	C	TCGA-49-4507-01A-01D-1265-08	879925	235324699	13925922	49	122149											
TBCE	6905	broad.mit.edu	37	chr1	235600787	235600787	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaagacgctgaacaaatgtGaggtgagcactggcgtcatg	14	7	1	5			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235600787	T	T	235600787	4	4	140	1	0	0	0	0	0	1	0	0	15756	1291	45	3	1156	3	TBCE	1	235600787	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	276088	235600787	13649834	50	122150											
ZP4	57829	broad.mit.edu	37	chr1	238048822	238048822	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctccacgtaaatgggatcCcgaagcaacttcaccactgg	8	14	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238048822	G	G	238048822	2	3	140	1	0	0	0	0	0	0	0	1	18347	610	22	4		4	ZP4	1	238048822	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	2448035	238048822	11201799	51	122151											
OR2T2	401992	broad.mit.edu	37	chr1	248616356	248616356	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccaagatgctccaggacctCctgtccaaggacaagaccat	8	15	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248616356	G	G	248616356	2	3	140	1	0	0	0	0	0	0	0	1	11114	842	30	4		4	OR2T2	1	248616356	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	10567534	248616356	634265	52	122152											
SNTG2	54221	broad.mit.edu	37	chr2	1093936	1093936	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcttgggcctgagtataAaggtatggaaatggttttct	14	5	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1093936	G	G	1093936	3	3	140	1	0	0	0	0	1	0	0	0	14989	15	1	5	275	5	SNTG2	2	1093936	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08		1093936	242105437	53	122153											
ALLC	55821	broad.mit.edu	37	chr2	3730410	3730410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcgtgagccaccgtgccCggcatccatcattaattttt	9	13	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3730410	A	A	3730410	1	1	140	0	1	0	0	0	0	0	0	0	534	667	23	1		1	ALLC	2	3730410	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2636474	3730410	239468963	54	122154											
ROCK2	9475	broad.mit.edu	37	chr2	11484135	11484135	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctaccagcaagctctccAcgttgatgggggagcgaggg	14	12	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11484135	T	T	11484135	3	4	140	1	0	0	0	0	1	0	0	0	13629	159	6	5	4170	5	ROCK2	2	11484135	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	7753725	11484135	231715238	55	122155											
NRBP1	29959	broad.mit.edu	37	chr2	27658099	27658099	+	Intron	DEL	G	-	-													atcaagattggctctggtgaGgggagggagaggttctgggc							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27658099	-	-	27658099	6	5	140	0	1	1	0	1	0	0	0	0	10737	1015	35	0		0	NRBP1	2	27658099	Intron	DEL	G	TCGA-49-4507-01A-01D-1265-08	16173964	27658099	215541274	56	122156											
IFT172	26160	broad.mit.edu	37	chr2	27668597	27668597	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggccttccggttttccaAccctgtgcccttaccggtac	9	15	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27668597	G	G	27668597	1	3	140	0	1	0	0	0	0	0	0	0	7627	58	2	5		5	IFT172	2	27668597	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	10498	27668597	215530776	57	122157											
SLC30A6	55676	broad.mit.edu	37	chr2	32428306	32428306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcgttctggacgcacaGgtagagctggacagacaggg	14	10	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32428306	T	T	32428306	1	4	140	0	1	0	0	0	0	0	0	0	14673	1015	35	2		2	SLC30A6	2	32428306	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	4759709	32428306	210771067	58	122158											
PUS10	150962	broad.mit.edu	37	chr2	61169700	61169700	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttgaagaaaagagctattGaataccataaattaaccctc	5	7	0	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61169700	C	C	61169700	1	2	140	0	1	0	0	0	0	0	0	0	12939	1305	45	4		4	PUS10	2	61169700	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	28741394	61169700	182029673	59	122159											
ETAA1	54465	broad.mit.edu	37	chr2	67632126	67632126	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagttccaaattggttcttcCaggaagttcaagtttgaatg	9	6	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67632126	G	G	67632126	3	3	140	1	0	0	0	0	1	0	0	0	5309	594	21	4	2330	4	ETAA1	2	67632126	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	6462426	67632126	175567247	60	122160											
DCTN1	1639	broad.mit.edu	37	chr2	74590188	74590189	+	Missense_Mutation	DNP	CT	AA	AA													tgattcaatgtctccagcagCtggctggtcttacgatacag							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74590189	AA	AA	74590188	3	1	140	1	0	0	0	0	1	0	0	0	4339	796	28	3	390	3	DCTN1	2	74590188	Missense_Mutation	DNP	CT	TCGA-49-4507-01A-01D-1265-08	6958062	74590188	168609185	61	122161											
SEMA4F	10505	broad.mit.edu	37	chr2	74903002	74903002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcctggagcttccggctgGatgagtgtgtggcccatgcc	16	11	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74903002	T	T	74903002	3	4	140	1	0	0	0	0	1	0	0	0	14148	1174	41	3	1655	3	SEMA4F	2	74903002	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	312814	74903002	168296371	62	122162											
REG1A	5967	broad.mit.edu	37	chr2	79348846	79348846	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagggagactcatgaaGggaggggaagctgccactct	17	7	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79348846	C	C	79348846	1	2	140	0	1	0	0	0	0	0	0	0	13318	1015	35	4		4	REG1A	2	79348846	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	4445844	79348846	163850527	63	122163											
CTNNA2	1496	broad.mit.edu	37	chr2	80620477	80620477	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtggtttccaacaatatcCttttccagggtgtcttcttg	8	9	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80620477	G	G	80620477	1	3	140	0	1	0	0	0	0	0	0	0	4047	696	24	4		4	CTNNA2	2	80620477	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1271631	80620477	162578896	64	122164											
MAT2A	4144	broad.mit.edu	37	chr2	85770260	85770260	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgaaggaagactcctcaAatgggaatatattttaattc	9	5	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85770260	C	C	85770260	1	2	140	0	1	0	0	0	0	0	0	0	9422	29	1	5		5	MAT2A	2	85770260	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	5149783	85770260	157429113	65	122165											
SFTPB	6439	broad.mit.edu	37	chr2	85894692	85894692	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catttcatctcatcccatttCatctcatccatcccctatgg	2	16	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85894692	T	T	85894692	1	4	140	0	1	0	0	0	0	0	0	0	14304	841	29	4		4	SFTPB	2	85894692	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	124432	85894692	157304681	66	122166											
C2orf51	200523	broad.mit.edu	37	chr2	88828513	88828513	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggatgcttccaagaaaaGctacatcatctcttgtctct	6	11	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88828513	C	C	88828513	1	2	140	0	1	0	0	0	0	0	0	0	2195	986	34	4		4	C2orf51	2	88828513	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	2933821	88828513	154370860	67	122167											
VWA3B	200403	broad.mit.edu	37	chr2	98851134	98851134	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccaaaaccagcctgctcAgaagccagatgtcctccctc	6	17	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98851134	G	G	98851134	3	3	140	1	0	0	0	0	1	0	0	0	17368	180	7	5	2394	5	VWA3B	2	98851134	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	10022621	98851134	144348239	68	122168											
SLC9A2	6549	broad.mit.edu	37	chr2	103281707	103281707	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatagcggcatttactactcGattcacccataatatccgag	6	11	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103281707	T	T	103281707	3	4	140	1	0	0	0	0	1	0	0	0	14826	1058	37	3	912	3	SLC9A2	2	103281707	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	4430573	103281707	139917666	69	122169											
GLI2	2736	broad.mit.edu	37	chr2	121708681	121708681	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagatgaccaggggaatgtCggtgtagcaaataataagtg	13	5	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121708681	T	T	121708681	1	4	140	0	1	0	0	0	0	0	0	0	6502	899	31	4		4	GLI2	2	121708681	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	18426974	121708681	121490692	70	122170											
CLASP1	23332	broad.mit.edu	37	chr2	122363412	122363412	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttcttggccaacctgcaaTcgtttccccacatccttctg	6	15	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122363412	A	A	122363412	2	1	140	1	0	0	0	0	0	0	0	1	3485	1422	50	5		5	CLASP1	2	122363412	Silent	SNP	T	TCGA-49-4507-01A-01D-1265-08	654731	122363412	120835961	71	122171											
PLEKHB2	55041	broad.mit.edu	37	chr2	131955375	131955375	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaaaaattaccctcaaggTcttggtgtttcagtcaaacc	7	10	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131955375	A	A	131955375	1	1	140	0	1	0	0	0	0	0	0	0	12160	1682	58	5		5	PLEKHB2	2	131955375	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	9591963	131955375	111243998	72	122172											
MCM6	4175	broad.mit.edu	37	chr2	136603753	136603753	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatcacaagtggcctatgtGaacagagcttacagaagtga	10	8	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136603753	C	C	136603753	1	2	140	0	1	0	0	0	0	0	0	0	9484	1305	45	4		4	MCM6	2	136603753	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	4648378	136603753	106595620	73	122173											
HNMT	3176	broad.mit.edu	37	chr2	138722049	138722049	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttcctgctctgtctttctCagaaaaccaaatatggcatc	6	12	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138722049	T	T	138722049	1	4	140	0	1	0	0	0	0	0	0	0	7322	841	29	4		4	HNMT	2	138722049	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2118296	138722049	104477324	74	122174											
KCNJ3	3760	broad.mit.edu	37	chr2	155711649	155711649	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaacgaataagttcagttCcgggcaactcagaagaaaaa	8	8	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155711649	T	T	155711649	3	4	140	1	0	0	0	0	1	0	0	0	8122	855	30	4	1340	4	KCNJ3	2	155711649	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	16989600	155711649	87487724	75	122175											
GPD2	2820	broad.mit.edu	37	chr2	157425218	157425218	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcatctttaggctttctctCctttttaaagtgcacacatg	5	11	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157425218	G	G	157425218	1	3	140	0	1	0	0	0	0	0	0	0	6671	870	30	4		4	GPD2	2	157425218	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1713569	157425218	85774155	76	122176											
ATF2	1386	broad.mit.edu	37	chr2	175939623	175939623	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtaagaatgcaccagtatGctgaggcaatacacagagta	11	8	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175939623	A	A	175939623	1	1	140	0	1	0	0	0	0	0	0	0	1084	1334	46	4		4	ATF2	2	175939623	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	18514405	175939623	67259750	77	122177											
PDE11A	50940	broad.mit.edu	37	chr2	178684942	178684942	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaactatttaggtcatctCttaccaattatttggtggtt	6	6	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178684942	T	T	178684942	1	4	140	0	1	0	0	0	0	0	0	0	11725	928	32	4		4	PDE11A	2	178684942	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2745319	178684942	64514431	78	122178											
TTN	7273	broad.mit.edu	37	chr2	179610711	179610711	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacagcaaatatttcagaAtctcccatggtgaggaatcc	7	10	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179610711	G	G	179610711	2	3	140	1	0	0	0	0	0	0	0	1	16861	98	4	5		5	TTN	2	179610711	Silent	SNP	A	TCGA-49-4507-01A-01D-1265-08	925769	179610711	63588662	79	122179											
ZNF804A	91752	broad.mit.edu	37	chr2	185803192	185803192	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttgtaacagctgagcaaatCctggctccattagctttacc	7	11	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803192	A	A	185803192	2	1	140	1	0	0	0	0	0	0	0	1	18299	845	30	3		3	ZNF804A	2	185803192	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	6192481	185803192	57396181	80	122180											
CLK1	1195	broad.mit.edu	37	chr2	201722654	201722669	+	Intron	DEL	ATATACCTGATACCAC	-	-													tatagttgctcctaatttaaAtatacctgataccacttccc							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201722669	-	-	201722654	6	5	140	0	1	1	0	1	0	0	0	0	3568	116	4	0		0	CLK1	2	201722654	Intron	DEL	ATATACCTGATACCAC	TCGA-49-4507-01A-01D-1265-08	15919462	201722654	41476719	81	122181											
ORC2L	4999	broad.mit.edu	37	chr2	201785052	201785052	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggaggtttcttcagtataAggactgtatgtagtagtttc	11	4	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201785052	C	C	201785052	2	2	140	1	0	0	0	0	0	0	0	1	11356	59	3	5		5	ORC2L	2	201785052	Silent	SNP	A	TCGA-49-4507-01A-01D-1265-08	62398	201785052	41414321	82	122182											
CASP8	841	broad.mit.edu	37	chr2	202149749	202149749	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccatctatgagctgacatCtcagttcactggtttgaagt	8	11	3	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202149749	G	G	202149749	3	3	140	1	0	0	0	0	1	0	0	0	2703	913	32	4	1320	4	CASP8	2	202149749	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	364697	202149749	41049624	83	122183											
CYP20A1	57404	broad.mit.edu	37	chr2	204131520	204131520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagaccagcctgccccacAtggtaaaaacgtgtctctac	7	13	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204131520	G	G	204131520	1	3	140	0	1	0	0	0	0	0	0	0	4185	232	8	5		5	CYP20A1	2	204131520	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	1981771	204131520	39067853	84	122184											
PIKFYVE	200576	broad.mit.edu	37	chr2	209212732	209212732	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggggaccgagaatcaaGgcgttgagcctcaaggtgtg	17	7	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209212732	A	A	209212732	3	1	140	1	0	0	0	0	1	0	0	0	12019	1000	35	4	5504	4	PIKFYVE	2	209212732	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	5081212	209212732	33986641	85	122185											
CPS1	1373	broad.mit.edu	37	chr2	211507149	211507149	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgatacatttctgcttctCtttgtattgtaacttcgtgc	8	8	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211507149	A	A	211507149	1	1	140	0	1	0	0	0	0	0	0	0	3855	928	32	3		3	CPS1	2	211507149	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2294417	211507149	31692224	86	122186											
TNS1	7145	broad.mit.edu	37	chr2	218682516	218682516	+	Frame_Shift_Del	DEL	C	-	-													gcgacaggcgaagacaccttCccattgatggtggcatagtt							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	218682516	-	-	218682516	7	5	140	1	0	1	0	1	0	0	0	0	16466	842	30	0	1020	0	TNS1	2	218682516	Frame_Shift_Del	DEL	C	TCGA-49-4507-01A-01D-1265-08	7175367	218682516	24516857	87	122187											
SLC23A3	151295	broad.mit.edu	37	chr2	220028231	220028231	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagccaggtagaagctggaGaatccagcagacaaaaccac	10	11	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220028231	C	C	220028231	3	2	140	1	0	0	0	0	1	0	0	0	14578	933	33	4	524	4	SLC23A3	2	220028231	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	1345715	220028231	23171142	88	122188											
PTPRN	5798	broad.mit.edu	37	chr2	220167274	220167274	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagggactgcggttgggGtgggaccagagtcaaggact	19	7	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220167274	A	A	220167274	1	1	140	0	1	0	0	0	0	0	0	0	12915	1276	44	4		4	PTPRN	2	220167274	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	139043	220167274	23032099	89	122189											
ALPP	250	broad.mit.edu	37	chr2	233245131	233245131	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctctccctccccacaggGtgcccggtatgtgtggaacc	11	16	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233245131	A	A	233245131	3	1	140	1	0	0	0	0	1	0	0	0	548	1275	44	4	820	4	ALPP	2	233245131	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	13077857	233245131	9954242	90	122190											
DGKD	8527	broad.mit.edu	37	chr2	234375661	234375661	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcctgccctcccagcctctCtggtggagatgggcatgagg	14	13	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234375661	G	G	234375661	1	3	140	0	1	0	0	0	0	0	0	0	4507	928	32	4		4	DGKD	2	234375661	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1130530	234375661	8823712	91	122191											
AGAP1	116987	broad.mit.edu	37	chr2	237028796	237028796	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcagcctgtgttctcgGgcctgatcgtgactgcacct	13	13	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237028796	A	A	237028796	1	1	140	0	1	0	0	0	0	0	0	0	366	1247	43	4		4	AGAP1	2	237028796	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	2653135	237028796	6170577	92	122192											
KIF1A	547	broad.mit.edu	37	chr2	241722554	241722554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaagacagtggggttgGgatgctggggacccgtgggg	20	6	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241722554	T	T	241722554	1	4	140	0	1	0	0	0	0	0	0	0	8353	1247	43	2		2	KIF1A	2	241722554	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	4693758	241722554	1476819	93	122193											
KCNH8	131096	broad.mit.edu	37	chr3	19436596	19436596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgtctcttaccacagGtgtctctcgtgcatcttcta	7	13	5	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19436596	T	T	19436596	3	4	140	1	0	0	0	0	1	0	0	0	8108	1275	44	3	996	3	KCNH8	3	19436596	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		19436596	178585834	94	122194											
ITGA9	3680	broad.mit.edu	37	chr3	37725290	37725290	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccccaccttcaactaccCcctgtgcctcatgttatatt	4	18	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37725290	T	T	37725290	1	4	140	0	1	0	0	0	0	0	0	0	7953	638	22	4		4	ITGA9	3	37725290	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	18288694	37725290	160297140	95	122195											
SCN10A	6336	broad.mit.edu	37	chr3	38830506	38830506	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caattaaccaaaatagtgacCgtaataaataaactgaacca	4	8	0	2	rs139793167		TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38830506	G	G	38830506	2	3	140	1	0	0	0	0	0	0	0	1	14025	639	23	4		4	SCN10A	3	38830506	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	1105216	38830506	159191924	96	122196											
SLC25A38	54977	broad.mit.edu	37	chr3	39438031	39438031	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaagagaggactgggaacGggtgaaatctgttgccctgc	14	9	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39438031	C	C	39438031	1	2	140	0	1	0	0	0	0	0	0	0	14616	1131	39	4		4	SLC25A38	3	39438031	3'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	607525	39438031	158584399	97	122197											
MYRIP	25924	broad.mit.edu	37	chr3	40223926	40223926	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtgtggtttggagacatCttggctattgcatggccact	12	7	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40223926	A	A	40223926	1	1	140	0	1	0	0	0	0	0	0	0	10194	928	32	3		3	MYRIP	3	40223926	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	785895	40223926	157798504	98	122198											
TRAK1	22906	broad.mit.edu	37	chr3	42264897	42264897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtctccaacctcaacctcGtggacaaagtcaggaggttt	9	13	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42264897	T	T	42264897	3	4	140	1	0	0	0	0	1	0	0	0	16573	1145	40	3	2980	3	TRAK1	3	42264897	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	2040971	42264897	155757533	99	122199											
TGM4	7047	broad.mit.edu	37	chr3	44945470	44945470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacgcaacgccgcaggagCgaagccagggtgagtgggtg	19	9	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44945470	A	A	44945470	2	1	140	1	0	0	0	0	0	0	0	1	15955	760	27	3		3	TGM4	3	44945470	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	2680573	44945470	153076960	100	122200											
SACM1L	22908	broad.mit.edu	37	chr3	45748446	45748446	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgcccaaagaagtagcAtgggctggggagaggagggt	19	7	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45748446	C	C	45748446	1	2	140	0	1	0	0	0	0	0	0	0	13914	232	8	5		5	SACM1L	3	45748446	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	802976	45748446	152273984	101	122201											
SEMA3G	56920	broad.mit.edu	37	chr3	52470040	52470040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgaaacggctaagcctgCggaacagcagcccccgctcc	10	17	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52470040	A	A	52470040	3	1	140	1	0	0	0	0	1	0	0	0	14143	768	27	3	424	3	SEMA3G	3	52470040	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	6721594	52470040	145552390	102	122202											
PRKCD	5580	broad.mit.edu	37	chr3	53217356	53217356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtctttccttgcctctccCagtggagctctcttgggatg	10	12	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53217356	T	T	53217356	1	4	140	0	1	0	0	0	0	0	0	0	12615	609	21	4		4	PRKCD	3	53217356	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	747316	53217356	144805074	103	122203											
PROK2	60675	broad.mit.edu	37	chr3	71830447	71830447	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaagacagaggatacaatTctttgaaatgaaaggggaga	12	3	1	6			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71830447	C	C	71830447	1	2	140	0	1	0	0	0	0	0	0	0	12657	1798	62	5		5	PROK2	3	71830447	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	18613091	71830447	126191983	104	122204											
OR5H15	403274	broad.mit.edu	37	chr3	97887972	97887972	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaatggactgtgcatccgGctattaatcttgtcatatat	7	9	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97887972	T	T	97887972	2	4	140	1	0	0	0	0	0	0	0	1	11255	1190	42	3		3	OR5H15	3	97887972	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	26057525	97887972	100134458	105	122205											
RG9MTD1	54931	broad.mit.edu	37	chr3	101283774	101283774	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataccagctgttacttatcCtaaaaatgagagtacacccc	5	11	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101283774	T	T	101283774	3	4	140	1	0	0	0	0	1	0	0	0	13379	681	24	4	151	4	RG9MTD1	3	101283774	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	3395802	101283774	96738656	106	122206											
PCNP	57092	broad.mit.edu	37	chr3	101298713	101298713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaaagttccagtcgcagCgctgagaagcgatcagctga	15	9	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101298713	A	A	101298713	3	1	140	1	0	0	0	0	1	0	0	0	11683	767	27	3	150	3	PCNP	3	101298713	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	14939	101298713	96723717	107	122207											
ZPLD1	131368	broad.mit.edu	37	chr3	102157313	102157313	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgtccacatgatagatatCtcttttccaggttttgcaat	7	8	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102157313	A	A	102157313	1	1	140	0	1	0	0	0	0	0	0	0	18350	928	32	3		3	ZPLD1	3	102157313	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	858600	102157313	95865117	108	122208											
BOC	91653	broad.mit.edu	37	chr3	112991383	112991383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccacgggtcacctgggCcaaggatgggtccagtgtca	13	14	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112991383	A	A	112991383	3	1	140	1	0	0	0	0	1	0	0	0	1487	739	26	3	812	3	BOC	3	112991383	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	10834070	112991383	85031047	109	122209											
KIAA2018	205717	broad.mit.edu	37	chr3	113389016	113389016	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agctctcctattctgtttatCccagcattaattttcttctt	3	11	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113389016	T	T	113389016	2	4	140	1	0	0	0	0	0	0	0	1	8338	842	30	4		4	KIAA2018	3	113389016	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	397633	113389016	84633414	110	122210											
ACAD9	28976	broad.mit.edu	37	chr3	128623262	128623262	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatggctcagaaggcttacGtcatggagagtatgacctac	12	8	2	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128623262	A	A	128623262	3	1	140	1	0	0	0	0	1	0	0	0	111	1145	40	4	1105	4	ACAD9	3	128623262	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	15234246	128623262	69399168	111	122211											
SLCO2A1	6578	broad.mit.edu	37	chr3	133692486	133692486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattccttaccccttgaggCaggggttggaagccactcac	10	14	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133692486	A	A	133692486	1	1	140	0	1	0	0	0	0	0	0	0	14840	725	25	3		3	SLCO2A1	3	133692486	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	5069224	133692486	64329944	112	122212											
IL20RB	53833	broad.mit.edu	37	chr3	136710636	136710636	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattttttatttgtagtagaGatggggtgtttcaccatgtt	10	3	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136710636	T	T	136710636	1	4	140	0	1	0	0	0	0	0	0	0	7739	957	33	3		3	IL20RB	3	136710636	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	3018150	136710636	61311794	113	122213											
CLDN18	51208	broad.mit.edu	37	chr3	137717893	137717893	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagagagctctggcttcacCgagtgccggggctacttcac	13	13	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137717893	A	A	137717893	2	1	140	1	0	0	0	0	0	0	0	1	3510	639	23	1		1	CLDN18	3	137717893	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	1007257	137717893	60304537	114	122214											
ZBBX	79740	broad.mit.edu	37	chr3	167035342	167035342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtttcatgtggatgtgGgaacgtatctggtagcattt	14	4	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167035342	T	T	167035342	3	4	140	1	0	0	0	0	1	0	0	0	17643	1232	43	2	1411	2	ZBBX	3	167035342	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	29317449	167035342	30987088	115	122215											
SPATA16	83893	broad.mit.edu	37	chr3	172642104	172642104	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagaccgaaaggtgttttaTgctctaaaaattgtaacaat	7	6	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172642104	C	C	172642104	3	2	140	1	0	0	0	0	1	0	0	0	15117	1464	51	5	493	5	SPATA16	3	172642104	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	5606762	172642104	25380326	116	122216											
EIF4A2	1974	broad.mit.edu	37	chr3	186504304	186504304	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttaaggttgtgttgctttCtgccacaatgccaactgatg	9	8	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186504304	G	G	186504304	3	3	140	1	0	0	0	0	1	0	0	0	5067	913	32	4	667	4	EIF4A2	3	186504304	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	13862200	186504304	11518126	117	122217											
ATP13A3	79572	broad.mit.edu	37	chr3	194181231	194181231	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaatcattataataatagtCaattcaaacacaaatcctct	1	9	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194181231	A	A	194181231	1	1	140	0	1	0	0	0	0	0	0	0	1129	841	29	3		3	ATP13A3	3	194181231	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	7676927	194181231	3841199	118	122218											
ZNF595	152687	broad.mit.edu	37	chr4	53546	53546	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgtcggtccccgcacGgcggctctggcccagcctgc	13	19	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53546	A	A	53546	1	1	140	0	1	0	0	0	0	0	0	0	18152	1131	39	4		4	ZNF595	4	53546	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08		53546	191100730	119	122219											
FGFRL1	53834	broad.mit.edu	37	chr4	1015986	1015986	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgttcctcggtcccaccCgcaggccccccaaagatggc	10	18	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1015986	T	T	1015986	1	4	140	0	1	0	0	0	0	0	0	0	5926	667	23	4		4	FGFRL1	4	1015986	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	962440	1015986	190138290	120	122220											
STK32B	55351	broad.mit.edu	37	chr4	5400150	5400150	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctggtccatgtcctgccGtggtaagttgaatcaaagtt	10	8	2	1	rs145677320	by1000genomes	TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5400150	A	A	5400150	1	1	140	0	1	0	0	0	0	0	0	0	15416	1160	40	4		4	STK32B	4	5400150	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	4384164	5400150	185754126	121	122221											
CCDC96	257236	broad.mit.edu	37	chr4	7042892	7042892	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agataaatacaaaatagagtCccgtcccaaatgacacaggc	7	10	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7042892	A	A	7042892	1	1	140	0	1	0	0	0	0	0	0	0	2902	870	30	3		3	CCDC96	4	7042892	3'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08	1642742	7042892	184111384	122	122222											
QDPR	5860	broad.mit.edu	37	chr4	17506088	17506088	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacccaagagctttccaaccTcagcagtcaccttcaacaca	4	17	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17506088	A	A	17506088	3	1	140	1	0	0	0	0	1	0	0	0	12980	1551	54	5	545	5	QDPR	4	17506088	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	10463196	17506088	173648188	123	122223											
ATP8A1	10396	broad.mit.edu	37	chr4	42524130	42524130	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgaataaagatcaaaactAtctggaaaccaaaccctctg	5	10	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42524130	C	C	42524130	1	2	140	0	1	0	0	0	0	0	0	0	1196	464	16	5		5	ATP8A1	4	42524130	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	25018042	42524130	148630146	124	122224											
CEP135	9662	broad.mit.edu	37	chr4	56851592	56851592	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtcaattacagttttaaTacactattttttaattttaa	2	4	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56851592	C	C	56851592	1	2	140	0	1	0	0	0	0	0	0	0	3277	1421	49	5		5	CEP135	4	56851592	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	14327462	56851592	134302684	125	122225											
TECRL	253017	broad.mit.edu	37	chr4	65175490	65175490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgattaaatattttgcaaaGgatccaacatataaaatgtc	5	5	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65175490	T	T	65175490	1	4	140	0	1	0	0	0	0	0	0	0	15868	1015	35	2		2	TECRL	4	65175490	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	8323898	65175490	125978786	126	122226											
C4orf40	401137	broad.mit.edu	37	chr4	71024672	71024672	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaatgagatttgtagaagGggaaaaaaaaaaaccactcc	9	5	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71024672	A	A	71024672	1	1	140	0	1	0	0	0	0	0	0	0	2292	1247	43	4		4	C4orf40	4	71024672	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	5849182	71024672	120129604	127	122227											
MUC7	4589	broad.mit.edu	37	chr4	71346522	71346522	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcttttctgcagttcagtGaaggtcgagaaagggatcat	11	6	4	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71346522	T	T	71346522	4	4	140	1	0	0	0	0	0	1	0	0	10075	1291	45	3	67	3	MUC7	4	71346522	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	321850	71346522	119807754	128	122228											
CENPE	1062	broad.mit.edu	37	chr4	104061004	104061004	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctttccattttgagagatTcttttatcctccttagctca	4	12	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104061004	C	C	104061004	3	2	140	1	0	0	0	0	1	0	0	0	3260	1783	62	5	2007	5	CENPE	4	104061004	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	32714482	104061004	87093272	129	122229											
TET2	54790	broad.mit.edu	37	chr4	106156700	106156700	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caactgccagcagttgatgaGaaacaaagagcaagagattc	10	8	0	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106156700	C	C	106156700	3	2	140	1	0	0	0	0	1	0	0	0	15892	942	33	4	1603	4	TET2	4	106156700	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	2095696	106156700	84997576	130	122230											
NPNT	255743	broad.mit.edu	37	chr4	106863478	106863478	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcagatatcccaaaagttAtgattgaaccttcaggtcca	6	9	2	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106863478	C	C	106863478	3	2	140	1	0	0	0	0	1	0	0	0	10685	449	16	5	957	5	NPNT	4	106863478	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	706778	106863478	84290798	131	122231											
PAPSS1	9061	broad.mit.edu	37	chr4	108581103	108581103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttagtgtgaaaagcaaCgaagaacttactttattaat	6	6	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108581103	A	A	108581103	1	1	140	0	1	0	0	0	0	0	0	0	11528	551	19	3		3	PAPSS1	4	108581103	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1717625	108581103	82573173	132	122232											
KIAA1109	84162	broad.mit.edu	37	chr4	123164149	123164149	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agactatagtattttatattCtaggttatcaagcaggggct	9	5	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123164149	T	T	123164149	1	4	140	0	1	0	0	0	0	0	0	0	8278	928	32	4		4	KIAA1109	4	123164149	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	14583046	123164149	67990127	133	122233											
GRIA2	2891	broad.mit.edu	37	chr4	158262733	158262733	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcacccctaattctatttCttttcttgactttgtctctg	4	11	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158262733	G	G	158262733	1	3	140	0	1	0	0	0	0	0	0	0	6834	928	32	4		4	GRIA2	4	158262733	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	35098584	158262733	32891543	134	122234											
F11	2160	broad.mit.edu	37	chr4	187192968	187192968	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggagacagatttttaaaGggagattgctattcttaaca	10	5	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187192968	T	T	187192968	1	4	140	0	1	0	0	0	0	0	0	0	5380	1015	35	2		2	F11	4	187192968	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	28930235	187192968	3961308	135	122235											
CCT5	22948	broad.mit.edu	37	chr5	10256185	10256185	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctattgaacacctggacaaGatcagcgatagcgtccttgt	10	10	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10256185	C	C	10256185	3	2	140	1	0	0	0	0	1	0	0	0	2986	933	33	4	464	4	CCT5	5	10256185	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		10256185	170659075	136	122236			1	96		6	6	2437	N	G_A	6.377602e-10
CCT5	22948	broad.mit.edu	37	chr5	10256279	10256279	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaagtgtacgtttcagtaGatgatatgattacccatttg	8	7	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10256279	C	C	10256279	1	2	140	0	1	0	0	0	0	0	0	0	2986	957	33	4		4	CCT5	5	10256279	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	94	10256279	170658981	137	122237			1	96		6	6	2437	N	G_A	6.377602e-10
CCT5	22948	broad.mit.edu	37	chr5	10258364	10258364	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggctggaggacactaaactGattaagggcgtgattgtgga	15	5	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10258364	C	C	10258364	2	2	140	1	0	0	0	0	0	0	0	1	2986	1277	45	4		4	CCT5	5	10258364	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	2085	10258364	170656896	138	122238			1	96		6	6	2437	N	G_A	6.377602e-10
CCT5	22948	broad.mit.edu	37	chr5	10258474	10258474	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcttaattccaccaattaAaatgtctttatgttccccca	2	12	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10258474	C	C	10258474	1	2	140	0	1	0	0	0	0	0	0	0	2986	29	1	5		5	CCT5	5	10258474	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	110	10258474	170656786	139	122239			1	96		6	6	2437	N	G_A	6.377602e-10
CCT5	22948	broad.mit.edu	37	chr5	10258515	10258515	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagaaagtggaagatgcgaaGattgcaattctcacatgtcc	10	7	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10258515	C	C	10258515	3	2	140	1	0	0	0	0	1	0	0	0	2986	933	33	4	763	4	CCT5	5	10258515	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	41	10258515	170656745	140	122240			1	96		6	6	2437	N	G_A	6.377602e-10
CCT5	22948	broad.mit.edu	37	chr5	10258621	10258621	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccttcagaaatacgaaaagGagaaatttgaagagatgatt	9	5	1	5			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10258621	T	T	10258621	4	4	140	1	0	0	0	0	0	1	0	0	2986	1175	41	3	869	3	CCT5	5	10258621	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	106	10258621	170656639	141	122241			1	96		6	6	2437	N	G_A	6.377602e-10
CDH12	1010	broad.mit.edu	37	chr5	21752001	21752001	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactctgccacggacccacTcccttcgtaggcatatgtgg	11	14	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21752001	A	A	21752001	3	1	140	1	0	0	0	0	1	0	0	0	3128	1551	54	5	158	5	CDH12	5	21752001	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	11493380	21752001	159163259	142	122242											
CDH12	1010	broad.mit.edu	37	chr5	21884218	21884218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttggttatgatgctatgGttggagattttatgaatatg	12	1	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21884218	T	T	21884218	1	4	140	0	1	0	0	0	0	0	0	0	3128	1276	44	3		3	CDH12	5	21884218	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	132217	21884218	159031042	143	122243											
ZFR	51663	broad.mit.edu	37	chr5	32379244	32379244	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttggaaaatcagaccaagTtggaactcgctgacagaggt	12	8	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32379244	A	A	32379244	3	1	140	1	0	0	0	0	1	0	0	0	17785	1725	60	5	428	5	ZFR	5	32379244	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	10495026	32379244	148536016	144	122244											
ARL15	54622	broad.mit.edu	37	chr5	53409207	53409207	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccttgagatccttggtagTagcggctccagtatttccgg	11	12	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53409207	A	A	53409207	3	1	140	1	0	0	0	0	1	0	0	0	933	1638	57	5	335	5	ARL15	5	53409207	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	21029963	53409207	127506053	145	122245											
SKIV2L2	23517	broad.mit.edu	37	chr5	54654399	54654399	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattttaactatgttcattcAgatttcttctggtgaataca	5	6	4	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54654399	T	T	54654399	5	4	140	1	0	0	0	0	0	0	1	0	14473	202	7	5	1590	5	SKIV2L2	5	54654399	Splice_Site	SNP	A	TCGA-49-4507-01A-01D-1265-08	1245192	54654399	126260861	146	122246											
MAP3K1	4214	broad.mit.edu	37	chr5	56174953	56174954	+	Intron	DNP	TC	AT	AT													ggctttattgatgaatcactTcaaaccctcttgtcttaaaa							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	56174954	AT	AT	56174953	1	1	140	0	1	0	0	0	0	0	0	0	9335	1798	62	5		5	MAP3K1	5	56174953	Intron	DNP	TC	TCGA-49-4507-01A-01D-1265-08	1520554	56174953	124740307	147	122247											
NLN	57486	broad.mit.edu	37	chr5	65081746	65081746	+	Intron	DEL	T	-	-													cagcctttctaggttagttcTtttttttttttctatgactg					rs76093113		TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65081746	-	-	65081746	6	5	140	0	1	1	0	1	0	0	0	0	10562	1624	56	0		0	NLN	5	65081746	Intron	DEL	T	TCGA-49-4507-01A-01D-1265-08	8906793	65081746	115833514	148	122248											
TMEM174	134288	broad.mit.edu	37	chr5	72469059	72469059	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctaagaagcagggtgagcCcacaaggagcaatggagcag	14	9	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72469059	A	A	72469059	1	1	140	0	1	0	0	0	0	0	0	0	16213	638	22	2		2	TMEM174	5	72469059	5'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08	7387313	72469059	108446201	149	122249											
RASGRF2	5924	broad.mit.edu	37	chr5	80388718	80388718	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggagagagacaatgcttcTtatttacaaaacacttttta	6	6	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80388718	A	A	80388718	3	1	140	1	0	0	0	0	1	0	0	0	13181	1606	56	5	1527	5	RASGRF2	5	80388718	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	7919659	80388718	100526542	150	122250											
MEF2C	4208	broad.mit.edu	37	chr5	88024937	88024937	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtggacggcgcaggcccTaaataaagcttcctaataga	11	10	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88024937	C	C	88024937	1	2	140	0	1	0	0	0	0	0	0	0	9550	1537	53	5		5	MEF2C	5	88024937	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	7636219	88024937	92890323	151	122251											
LNPEP	4012	broad.mit.edu	37	chr5	96329658	96329658	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtgactaaaatcattgctCatgagctggcccaccaggta	10	10	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96329658	T	T	96329658	3	4	140	1	0	0	0	0	1	0	0	0	8938	826	29	4	1412	4	LNPEP	5	96329658	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	8304721	96329658	84585602	152	122252											
PJA2	9867	broad.mit.edu	37	chr5	108698478	108698478	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctagcagagatttaatttTcataaattagaatcatgaac	6	5	2	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108698478	C	C	108698478	1	2	140	0	1	0	0	0	0	0	0	0	12057	1798	62	5		5	PJA2	5	108698478	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	12368820	108698478	72216782	153	122253											
APC	324	broad.mit.edu	37	chr5	112178162	112178162	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgccaggcagacatccCaaataggtgggtcaagtaaa	11	9	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112178162	T	T	112178162	4	4	140	1	0	0	0	0	0	1	0	0	765	595	21	4	6929	4	APC	5	112178162	Nonsense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	3479684	112178162	68737098	154	122254											
PCDHAC1	56135	broad.mit.edu	37	chr5	140307479	140307479	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggtgactgacgtgaaCgatcatgcccccgaactgga	14	10	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140307479	T	T	140307479	2	4	140	1	0	0	0	0	0	0	0	1	11626	535	19	4		4	PCDHAC1	5	140307479	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	28129317	140307479	40607781	155	122255											
PCDHB13	56123	broad.mit.edu	37	chr5	140595778	140595778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacctggtggtggcgttgGcctcggtgtcttcgctcttc	13	12	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140595778	T	T	140595778	3	4	140	1	0	0	0	0	1	0	0	0	11632	1203	42	3	2085	3	PCDHB13	5	140595778	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	288299	140595778	40319482	156	122256											
PCDHGB4	8641	broad.mit.edu	37	chr5	140768714	140768714	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtacaatataaccgttacGgcaacagatcggggcaagcc	11	10	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140768714	A	A	140768714	2	1	140	1	0	0	0	0	0	0	0	1	11659	1103	39	4		4	PCDHGB4	5	140768714	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	172936	140768714	40146546	157	122257											
PCDHGA11	56105	broad.mit.edu	37	chr5	140802658	140802658	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgggactcttcgcggtggggGagcacacgggcgaggtgcgt	20	10	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140802658	A	A	140802658	3	1	140	1	0	0	0	0	1	0	0	0	11646	1175	41	4	1866	4	PCDHGA11	5	140802658	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	33944	140802658	40112602	158	122258											
FAM71B	153745	broad.mit.edu	37	chr5	156592455	156592455	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatttggtcctgagccctTgcacatgcaatactttttcc	6	13	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156592455	A	A	156592455	1	1	140	0	1	0	0	0	0	0	0	0	5659	1827	63	5		5	FAM71B	5	156592455	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	15789797	156592455	24322805	159	122259											
GABRG2	2566	broad.mit.edu	37	chr5	161521111	161521111	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacttttttatatgttgtaAaagtagtgtttaaatagcat	6	2	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161521111	G	G	161521111	1	3	140	0	1	0	0	0	0	0	0	0	6232	29	1	5		5	GABRG2	5	161521111	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	4928656	161521111	19394149	160	122260											
SLC34A1	6569	broad.mit.edu	37	chr5	176825294	176825294	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccgcctctaggctgtgGgcccagactacagcctggaa	11	16	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176825294	T	T	176825294	1	4	140	0	1	0	0	0	0	0	0	0	14681	1247	43	2		2	SLC34A1	5	176825294	3'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	15304183	176825294	4089966	161	122261											
ZFP2	80108	broad.mit.edu	37	chr5	178349610	178349610	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggcaagagcatggcaggTatggcccatctcctgtacgc	13	12	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178349610	G	G	178349610	1	3	140	0	1	0	0	0	0	0	0	0	17767	1653	57	5		5	ZFP2	5	178349610	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	1524316	178349610	2565650	162	122262											
DTNBP1	84062	broad.mit.edu	37	chr6	15663061	15663061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccggaggtgaaatcctGctgcacgctcagcagccgct	11	16	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15663061	T	T	15663061	3	4	140	1	0	0	0	0	1	0	0	0	4830	1328	46	3	1156	3	DTNBP1	6	15663061	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		15663061	155452006	163	122263											
FAM8A1	51439	broad.mit.edu	37	chr6	17600920	17600920	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcaggagcaggcgggctgcGaggcgcccgaagccgcggcg	20	13	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17600920	A	A	17600920	3	1	140	1	0	0	0	0	1	0	0	0	5702	1059	37	4	282	4	FAM8A1	6	17600920	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	1937859	17600920	153514147	164	122264											
FAM8A1	51439	broad.mit.edu	37	chr6	17602746	17602746	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgactttctttagcaattcAttacatggcttgtgttccaa	6	8	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17602746	G	G	17602746	1	3	140	0	1	0	0	0	0	0	0	0	5702	232	8	5		5	FAM8A1	6	17602746	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	1826	17602746	153512321	165	122265											
PRL	5617	broad.mit.edu	37	chr6	22290656	22290656	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttacttgtgatttttgctTagagaggctgtactgaaata	10	4	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22290656	A	A	22290656	1	1	140	0	1	0	0	0	0	0	0	0	12634	1769	61	5		5	PRL	6	22290656	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	4687910	22290656	148824411	166	122266											
SCAND3	114821	broad.mit.edu	37	chr6	28541412	28541412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggttttagtacttcacCatcaattacagctacaaaac	5	10	2	0	rs137872757	by1000genomes	TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28541412	A	A	28541412	3	1	140	1	0	0	0	0	1	0	0	0	13988	594	21	2	1727	2	SCAND3	6	28541412	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	6250756	28541412	142573655	167	122267											
FLOT1	10211	broad.mit.edu	37	chr6	30698670	30698670	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctaggtggcaagtgagctaGgcagggtcagggaggggaca	19	7	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30698670	C	C	30698670	1	2	140	0	1	0	0	0	0	0	0	0	5994	1015	35	4		4	FLOT1	6	30698670	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	2157258	30698670	140416397	168	122268											
HSPA1L	3305	broad.mit.edu	37	chr6	31777944	31777944	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgatagggttacacatctgCtccaattcctttctcttatg	6	10	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31777944	G	G	31777944	3	3	140	1	0	0	0	0	1	0	0	0	7479	796	28	4	123	4	HSPA1L	6	31777944	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1079274	31777944	139337123	169	122269											
ZNF318	24149	broad.mit.edu	37	chr6	43316154	43316154	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctgtaggctctctactgtCacttaaagacttctgggatt	8	10	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43316154	G	G	43316154	3	3	140	1	0	0	0	0	1	0	0	0	17962	826	29	4	3879	4	ZNF318	6	43316154	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	11538210	43316154	127798913	170	122270											
CDC5L	988	broad.mit.edu	37	chr6	44371578	44371578	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccaaaaaagaagagaacTtcgagcagctggcatagaaa	9	9	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44371578	G	G	44371578	3	3	140	1	0	0	0	0	1	0	0	0	3112	1609	56	5	594	5	CDC5L	6	44371578	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	1055424	44371578	126743489	171	122271											
CD2AP	23607	broad.mit.edu	37	chr6	47501526	47501526	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttcctgcataattacatCaaaatagaaggatattttat	4	7	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47501526	T	T	47501526	1	4	140	0	1	0	0	0	0	0	0	0	3024	841	29	4		4	CD2AP	6	47501526	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	3129948	47501526	123613541	172	122272											
DST	667	broad.mit.edu	37	chr6	56462573	56462573	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgctgattcagattctcctGagtggttccaacttgcccat	8	11	2	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56462573	A	A	56462573	4	1	140	1	0	0	0	0	0	1	0	0	4823	1299	45	4	11452	4	DST	6	56462573	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	8961047	56462573	114652494	173	122273											
DST	667	broad.mit.edu	37	chr6	56467847	56467847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactagaaaaaaaaattgtGcattcagttatctttcccca	5	8	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56467847	T	T	56467847	1	4	140	0	1	0	0	0	0	0	0	0	4823	1334	46	3		3	DST	6	56467847	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	5274	56467847	114647220	174	122274											
C6orf167	253714	broad.mit.edu	37	chr6	97679434	97679434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatcttgtttatcgcaaCagcaagtcttcaccatttca	5	12	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97679434	A	A	97679434	3	1	140	1	0	0	0	0	1	0	0	0	2365	478	17	3	2386	3	C6orf167	6	97679434	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	41211587	97679434	73435633	175	122275											
SOBP	55084	broad.mit.edu	37	chr6	107854781	107854782	+	Missense_Mutation	DNP	GG	CT	CT													tgcagcgagaagtgctttgcGgcctgccgacgagcctactt							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	107854782	CT	CT	107854781	3	2	140	1	0	0	0	0	1	0	0	0	15026	1103	39	4	554	4	SOBP	6	107854781	Missense_Mutation	DNP	GG	TCGA-49-4507-01A-01D-1265-08	10175347	107854781	63260286	176	122276											
SEC63	11231	broad.mit.edu	37	chr6	108218811	108218811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaatataaaagccttgaCacacaactcttaaagcataa	3	8	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108218811	T	T	108218811	1	4	140	0	1	0	0	0	0	0	0	0	14118	493	17	4		4	SEC63	6	108218811	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	364030	108218811	62896256	177	122277											
MOXD1	26002	broad.mit.edu	37	chr6	132641742	132641742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctctccataaatgaacTttaataataataaaagtttt	2	6	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132641742	A	A	132641742	1	1	140	0	1	0	0	0	0	0	0	0	9814	1624	56	5		5	MOXD1	6	132641742	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	24422931	132641742	38473325	178	122278											
PHACTR2	9749	broad.mit.edu	37	chr6	144093267	144093267	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgactttagcctggccTatgtcaagtgtctgctttcc	9	11	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144093267	C	C	144093267	1	2	140	0	1	0	0	0	0	0	0	0	11905	1537	53	5		5	PHACTR2	6	144093267	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	11451525	144093267	27021800	179	122279											
LPA	4018	broad.mit.edu	37	chr6	161071266	161071266	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattttgccatgcattctaTgtgtgagaaaaatttaatca	6	6	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161071266	C	C	161071266	1	2	140	0	1	0	0	0	0	0	0	0	8990	1479	51	5		5	LPA	6	161071266	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	16977999	161071266	10043801	180	122280											
RADIL	55698	broad.mit.edu	37	chr7	4874839	4874839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgctggcccaccgtgtgcCggtcccggttgagcacatac	12	16	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4874839	T	T	4874839	3	4	140	1	0	0	0	0	1	0	0	0	13105	652	23	4	2460	4	RADIL	7	4874839	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08		4874839	154263824	181	122281											
TNRC18	84629	broad.mit.edu	37	chr7	5391678	5391678	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctggaggggccttgggCgggccactcgtccttcagga	18	11	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5391678	T	T	5391678	3	4	140	1	0	0	0	0	1	0	0	0	16462	768	27	4	3720	4	TNRC18	7	5391678	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	516839	5391678	153746985	182	122282											
ZDHHC4	55146	broad.mit.edu	37	chr7	6628266	6628266	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtacctgttcctgacttttCcacggattgtcttcatgctg	8	11	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6628266	G	G	6628266	3	3	140	1	0	0	0	0	1	0	0	0	17743	855	30	4	782	4	ZDHHC4	7	6628266	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1236588	6628266	152510397	183	122283											
TWISTNB	221830	broad.mit.edu	37	chr7	19738143	19738143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttctttggctcctcctcCcagatgccattcgcattatt	5	13	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19738143	A	A	19738143	3	1	140	1	0	0	0	0	1	0	0	0	16910	624	22	2	207	2	TWISTNB	7	19738143	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	13109877	19738143	139400520	184	122284											
AVL9	23080	broad.mit.edu	37	chr7	32801177	32801177	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccttttcccgaagctgCgccaggaaattatggacgaa	10	11	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32801177	T	T	32801177	1	4	140	0	1	0	0	0	0	0	0	0	1233	783	27	4		4	AVL9	7	32801177	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	13063034	32801177	126337486	185	122285											
NPC1L1	29881	broad.mit.edu	37	chr7	44553237	44553237	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagtgccagagccgggtTaacgtcaggccctgcggaga	14	13	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44553237	A	A	44553237	3	1	140	1	0	0	0	0	1	0	0	0	10666	1754	61	5	194	5	NPC1L1	7	44553237	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	11752060	44553237	114585426	186	122286											
C7orf65	401335	broad.mit.edu	37	chr7	47698471	47698471	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggagagggtattgagtggttCgggatttactaaaacccctc	13	7	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47698471	T	T	47698471	1	4	140	0	1	0	0	0	0	0	0	0	2436	899	31	4		4	C7orf65	7	47698471	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	3145234	47698471	111440192	187	122287											
ZNF479	90827	broad.mit.edu	37	chr7	57188140	57188140	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaggctttgccacattcctCacacctgcagggtttctctc	7	14	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57188140	G	G	57188140	3	3	140	1	0	0	0	0	1	0	0	0	18060	835	29	4	596	4	ZNF479	7	57188140	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	9489669	57188140	101950523	188	122288											
KCTD7	154881	broad.mit.edu	37	chr7	66104162	66104162	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggtgtgtgacaagcacctCgtgaaccactactactgcaa	11	11	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66104162	T	T	66104162	2	4	140	1	0	0	0	0	0	0	0	1	8184	871	31	4		4	KCTD7	7	66104162	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	8916022	66104162	93034501	189	122289											
FKBP6	8468	broad.mit.edu	37	chr7	72754619	72754619	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgttactcctcttgaccAtctgccttccctctccacag	5	17	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72754619	G	G	72754619	1	3	140	0	1	0	0	0	0	0	0	0	5969	232	8	5		5	FKBP6	7	72754619	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	6650457	72754619	86384044	190	122290											
CLIP2	7461	broad.mit.edu	37	chr7	73768246	73768246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgtggtgcggtacgtgGgggagacagactttgccaag	18	8	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73768246	T	T	73768246	3	4	140	1	0	0	0	0	1	0	0	0	3565	1232	43	2	725	2	CLIP2	7	73768246	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	1013627	73768246	85370417	191	122291											
POR	5447	broad.mit.edu	37	chr7	75573219	75573219	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgtggctcagtcttatttCatacctgcaacatcttttaa	5	11	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75573219	T	T	75573219	1	4	140	0	1	0	0	0	0	0	0	0	12352	841	29	4		4	POR	7	75573219	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1804973	75573219	83565444	192	122292											
PCLO	27445	broad.mit.edu	37	chr7	82387923	82387923	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaggactgaccaaaagttTgtgccagttgactattcttt	9	7	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82387923	A	A	82387923	4	1	140	1	0	0	0	0	0	1	0	0	11677	1821	63	5	35	5	PCLO	7	82387923	Nonsense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	6814704	82387923	76750740	193	122293											
PCLO	27445	broad.mit.edu	37	chr7	82784916	82784916	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggactgggggtttcactgtCcctggttgttgagccaatgg	15	8	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82784916	A	A	82784916	2	1	140	1	0	0	0	0	0	0	0	1	11677	842	30	3		3	PCLO	7	82784916	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	396993	82784916	76353747	194	122294											
CASD1	64921	broad.mit.edu	37	chr7	94162433	94162433	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaaggaagaacttacattTtaaggaaaaaaattaaatga	7	2	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94162433	A	A	94162433	1	1	140	0	1	0	0	0	0	0	0	0	2690	1856	64	5		5	CASD1	7	94162433	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	11377517	94162433	64976230	195	122295											
DLX6	1750	broad.mit.edu	37	chr7	96637044	96637044	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaccatttattccagcctGcagctccaggctttaaacca	7	14	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96637044	A	A	96637044	2	1	140	1	0	0	0	0	0	0	0	1	4615	1306	46	4		4	DLX6	7	96637044	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	2474611	96637044	62501619	196	122296											
OCM2	4951	broad.mit.edu	37	chr7	97614378	97614378	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccagtgagaattccaaaGagggaaggaagcaaagaaaa	13	5	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97614378	A	A	97614378	1	1	140	0	1	0	0	0	0	0	0	0	10917	957	33	4		4	OCM2	7	97614378	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	977334	97614378	61524285	197	122297											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97922811	97922811	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagaaccggagaggcccGggagagtccttggctgtcct	17	10	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97922811	T	T	97922811	1	4	140	0	1	0	0	0	0	0	0	0	1307	1131	39	1		1	BAIAP2L1	7	97922811	3'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	308433	97922811	61215852	198	122298											
MUC17	140453	broad.mit.edu	37	chr7	100701352	100701352	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagctgagaagtctgggagtGaggagatcccagtccggcta	16	8	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100701352	T	T	100701352	1	4	140	0	1	0	0	0	0	0	0	0	10068	1305	45	3		3	MUC17	7	100701352	3'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	2778541	100701352	58437311	199	122299											
MET	4233	broad.mit.edu	37	chr7	116417313	116417314	+	Intron	INS	-	TT	TT													tagtggtattgttaaaagtaINSttttttaaatgtactctttt							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	116417314	TT	TT	116417313	6	5	140	0	1	1	1	0	0	0	0	0	9578	464	16	0		0	MET	7	116417313	Intron	INS	-	TCGA-49-4507-01A-01D-1265-08	15715961	116417313	42721350	200	122300											
C7orf58	79974	broad.mit.edu	37	chr7	120629802	120629802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtcgaggaagctcacaGccgctgcccctggggctgtc	16	13	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120629802	T	T	120629802	3	4	140	1	0	0	0	0	1	0	0	0	2430	971	34	3	129	3	C7orf58	7	120629802	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	4212489	120629802	38508861	201	122301											
CCDC136	64753	broad.mit.edu	37	chr7	128454821	128454821	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgctgccaggaggagctcCgccagctcagggagaagagg	17	10	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128454821	G	G	128454821	3	3	140	1	0	0	0	0	1	0	0	0	2796	652	23	4	2951	4	CCDC136	7	128454821	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	7825019	128454821	30683842	202	122302											
EXOC4	60412	broad.mit.edu	37	chr7	132973716	132973716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaagatgctgctgcactGcaaacgggatgagcttcgga	13	9	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132973716	T	T	132973716	3	4	140	1	0	0	0	0	1	0	0	0	5348	1319	46	3	327	3	EXOC4	7	132973716	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	4518895	132973716	26164947	203	122303											
AKR1B1	231	broad.mit.edu	37	chr7	134132119	134132119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accaagttcctctgcatgggGaaccggatcaggacctgtga	12	11	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134132119	T	T	134132119	3	4	140	1	0	0	0	0	1	0	0	0	466	1165	41	3	206	3	AKR1B1	7	134132119	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	1158403	134132119	25006544	204	122304											
MGAM	8972	broad.mit.edu	37	chr7	141796116	141796116	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggctctgttgggcaccttCatttccctttccaggtttgt	10	11	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141796116	T	T	141796116	1	4	140	0	1	0	0	0	0	0	0	0	9634	841	29	4		4	MGAM	7	141796116	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	7663997	141796116	17342547	205	122305											
PRSS1	5644	broad.mit.edu	37	chr7	142460610	142460610	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatgggccaccatgagaaGgacatggagccacagagctg	14	9	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142460610	A	A	142460610	1	1	140	0	1	0	0	0	0	0	0	0	12720	1015	35	4		4	PRSS1	7	142460610	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	664494	142460610	16678053	206	122306											
EPHB6	2051	broad.mit.edu	37	chr7	142564139	142564139	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcccccttccctactcctGatctccagcctggtccaccc	6	21	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142564139	T	T	142564139	1	4	140	0	1	0	0	0	0	0	0	0	5220	1305	45	3		3	EPHB6	7	142564139	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	103529	142564139	16574524	207	122307											
CLCN1	1180	broad.mit.edu	37	chr7	143020513	143020513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaatgagctggggccaGgtggtagaaggagtccggct	18	6	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143020513	T	T	143020513	1	4	140	0	1	0	0	0	0	0	0	0	3493	1015	35	2		2	CLCN1	7	143020513	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	456374	143020513	16118150	208	122308											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259538	147259538	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacattttgacactgtgcTtttcaaaaagttcatgtttg	6	6	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147259538	A	A	147259538	1	1	140	0	1	0	0	0	0	0	0	0	3679	1624	56	5		5	CNTNAP2	7	147259538	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	4239025	147259538	11879125	209	122309											
CNTNAP2	26047	broad.mit.edu	37	chr7	147336165	147336165	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagcatttgcatactaatGatccagggtcctggttgttt	10	7	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147336165	T	T	147336165	1	4	140	0	1	0	0	0	0	0	0	0	3679	1305	45	3		3	CNTNAP2	7	147336165	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	76627	147336165	11802498	210	122310											
CNTNAP2	26047	broad.mit.edu	37	chr7	147914548	147914548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttcagcaccaccaaggCgccctgcattctcctctaca	6	18	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147914548	A	A	147914548	3	1	140	1	0	0	0	0	1	0	0	0	3679	768	27	3	3253	3	CNTNAP2	7	147914548	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	578383	147914548	11224115	211	122311											
SLC4A2	6522	broad.mit.edu	37	chr7	150773267	150773267	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcttcaccgaccgagagatGaaatgtgtaagccctcccgt	9	12	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150773267	A	A	150773267	3	1	140	1	0	0	0	0	1	0	0	0	14768	1290	45	4	3721	4	SLC4A2	7	150773267	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	2858719	150773267	8365396	212	122312											
PIWIL2	55124	broad.mit.edu	37	chr8	22147846	22147846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcattcggaatgactgtGtgctggatgtcatgtgagtg	15	5	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22147846	T	T	22147846	3	4	140	1	0	0	0	0	1	0	0	0	12053	1377	48	3	1202	3	PIWIL2	8	22147846	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		22147846	124216176	213	122313											
ZMAT4	79698	broad.mit.edu	37	chr8	40532546	40532546	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaaagtctcctgttcacTctagagcttaaacatcccca	4	14	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40532546	C	C	40532546	1	2	140	0	1	0	0	0	0	0	0	0	17820	1566	54	5		5	ZMAT4	8	40532546	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	18384700	40532546	105831476	214	122314											
GINS4	84296	broad.mit.edu	37	chr8	41399491	41399491	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgagctctgcaggcaaatGtgtttccctctttttcaggg	11	11	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41399491	A	A	41399491	1	1	140	0	1	0	0	0	0	0	0	0	6454	1392	48	4		4	GINS4	8	41399491	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	866945	41399491	104964531	215	122315											
EFCAB1	79645	broad.mit.edu	37	chr8	49647699	49647699	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccgtcagcttctgcagtttCttgcggttcatgtctggcgc	11	12	5	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49647699	T	T	49647699	2	4	140	1	0	0	0	0	0	0	0	1	4973	912	32	4		4	EFCAB1	8	49647699	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	8248208	49647699	96716323	216	122316											
ABRA	137735	broad.mit.edu	37	chr8	107773333	107773333	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctctccttcaaagtctaCcagtccatgtttcctggcac	5	15	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107773333	T	T	107773333	3	4	140	1	0	0	0	0	1	0	0	0	100	507	18	4	71	4	ABRA	8	107773333	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	58125634	107773333	38590689	217	122317											
PKHD1L1	93035	broad.mit.edu	37	chr8	110461710	110461710	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattatgtgaaattccatctAataatggtaagttgtcagaa	7	4	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110461710	G	G	110461710	3	3	140	1	0	0	0	0	1	0	0	0	12067	362	13	5	6327	5	PKHD1L1	8	110461710	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	2688377	110461710	35902312	218	122318											
OC90	729330	broad.mit.edu	37	chr8	133036873	133036873	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggggctgcgggcacagggTgcaggctgtcttcacaggct	18	10	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133036873	C	C	133036873	3	2	140	1	0	0	0	0	1	0	0	0	10909	1696	59	5	148	5	OC90	8	133036873	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	22575163	133036873	13327149	219	122319											
TMEM71	137835	broad.mit.edu	37	chr8	133771176	133771176	+	Intron	DEL	A	-	-													gattctctgcaaaagatgttAaaaaaaaggtggactatata							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133771176	-	-	133771176	6	5	140	0	1	1	0	1	0	0	0	0	16323	377	13	0		0	TMEM71	8	133771176	Intron	DEL	A	TCGA-49-4507-01A-01D-1265-08	734303	133771176	12592846	220	122320											
NDRG1	10397	broad.mit.edu	37	chr8	134262579	134262579	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctcaaactcagagcctgcCtcttccgctcattttatact	5	14	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134262579	G	G	134262579	1	3	140	0	1	0	0	0	0	0	0	0	10346	696	24	4		4	NDRG1	8	134262579	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	491403	134262579	12101443	221	122321											
PLEC	5339	broad.mit.edu	37	chr8	144992968	144992968	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccgcctcgagagcctcaCggaggctcctggtgccctcc	11	18	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144992968	T	T	144992968	3	4	140	1	0	0	0	0	1	0	0	0	12147	536	19	4	2626	4	PLEC	8	144992968	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	10730389	144992968	1371054	222	122322											
DOCK8	81704	broad.mit.edu	37	chr9	304704	304704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgaacccgctgctcaGgtatttcctgtcaacaaaca	8	12	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	304704	T	T	304704	3	4	140	1	0	0	0	0	1	0	0	0	4733	1014	35	2	546	2	DOCK8	9	304704	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		304704	140908727	223	122323											
C9orf93	203238	broad.mit.edu	37	chr9	15727767	15727767	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgagtattgtaattccttTtcaggttttttaaattaact	5	5	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15727767	G	G	15727767	1	3	140	0	1	0	0	0	0	0	0	0	2532	1856	64	5		5	C9orf93	9	15727767	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	15423063	15727767	125485664	224	122324											
SLC24A2	25769	broad.mit.edu	37	chr9	19786748	19786748	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacccatgaaaaggcctaaGactcgaattaacttcagttt	7	9	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19786748	T	T	19786748	2	4	140	1	0	0	0	0	0	0	0	1	14580	929	33	3		3	SLC24A2	9	19786748	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	4058981	19786748	121426683	225	122325											
KIF24	347240	broad.mit.edu	37	chr9	34255858	34255858	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttgagccatgtgacattTtcactgttgcagggcaactt	11	8	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34255858	C	C	34255858	2	2	140	1	0	0	0	0	0	0	0	1	8362	1838	64	5		5	KIF24	9	34255858	Silent	SNP	T	TCGA-49-4507-01A-01D-1265-08	14469110	34255858	106957573	226	122326											
NPR2	4882	broad.mit.edu	37	chr9	35802708	35802708	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgggaccaggacagacagtCtattccatgtcacttaccag	10	11	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35802708	T	T	35802708	1	4	140	0	1	0	0	0	0	0	0	0	10690	928	32	4		4	NPR2	9	35802708	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1546850	35802708	105410723	227	122327											
GDA	9615	broad.mit.edu	37	chr9	74764526	74764526	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacatcttccgagggacgttCgtccactccacctggacctg	9	16	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74764526	T	T	74764526	2	4	140	1	0	0	0	0	0	0	0	1	6369	883	31	4		4	GDA	9	74764526	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	38961818	74764526	66448905	228	122328											
PCSK5	5125	broad.mit.edu	37	chr9	78506251	78506251	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttcccggaggccaacCgtatcgccagcaagtacgga	14	13	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78506251	T	T	78506251	3	4	140	1	0	0	0	0	1	0	0	0	11697	652	23	4	156	4	PCSK5	9	78506251	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	3741725	78506251	62707180	229	122329											
PCSK5	5125	broad.mit.edu	37	chr9	78686660	78686660	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagtgcgaatgctggacgGagatgtcacggacatggttg	17	6	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78686660	A	A	78686660	3	1	140	1	0	0	0	0	1	0	0	0	11697	1174	41	4	766	4	PCSK5	9	78686660	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	180409	78686660	62526771	230	122330											
PCSK5	5125	broad.mit.edu	37	chr9	78749075	78749075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttattgtcaggacttcccGtgcgggacatttgaacgcta	11	9	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78749075	T	T	78749075	3	4	140	1	0	0	0	0	1	0	0	0	11697	1145	40	3	1297	3	PCSK5	9	78749075	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	62415	78749075	62464356	231	122331											
SECISBP2	79048	broad.mit.edu	37	chr9	91943573	91943573	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttttaattttgtaattacAgatggttaccataagcgaac	6	6	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91943573	T	T	91943573	5	4	140	1	0	0	0	0	0	0	1	0	14119	202	7	5	591	5	SECISBP2	9	91943573	Splice_Site	SNP	A	TCGA-49-4507-01A-01D-1265-08	13194498	91943573	49269858	232	122332											
COL15A1	1306	broad.mit.edu	37	chr9	101784552	101784552	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcttgcagtcagaccctaGggctttctgcctctactagg	9	12	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101784552	T	T	101784552	1	4	140	0	1	0	0	0	0	0	0	0	3704	1015	35	2		2	COL15A1	9	101784552	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	9840979	101784552	39428879	233	122333											
GRIN3A	116443	broad.mit.edu	37	chr9	104499870	104499870	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggttcaggttgtccacgGcaaataggagggcgtcccgt	15	11	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104499870	T	T	104499870	3	4	140	1	0	0	0	0	1	0	0	0	6849	1203	42	3	2991	3	GRIN3A	9	104499870	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	2715318	104499870	36713561	234	122334											
DNAJC25-GNG10	552891	broad.mit.edu	37	chr9	114428955	114428955	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttgtagttcaagtattAgaactttcagcagaaagaga	8	6	3	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114428955	G	G	114428955	1	3	140	0	1	0	0	0	0	0	0	0	4684	435	15	5		5	DNAJC25-GNG10	9	114428955	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	9929085	114428955	26784476	235	122335											
C9orf91	203197	broad.mit.edu	37	chr9	117396045	117396045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctggcgtttgtcttaCaggccaacaccaacacggac	11	13	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117396045	T	T	117396045	1	4	140	0	1	0	0	0	0	0	0	0	2531	493	17	4		4	C9orf91	9	117396045	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2967090	117396045	23817386	236	122336											
C9orf117	286207	broad.mit.edu	37	chr9	130473488	130473488	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctctgtctgaccccttccCctcccacctttctggccaga	6	20	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130473488	T	T	130473488	1	4	140	0	1	0	0	0	0	0	0	0	2477	638	22	4		4	C9orf117	9	130473488	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	13077443	130473488	10739943	237	122337											
DNM1	1759	broad.mit.edu	37	chr9	130982720	130982720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaggttagcctctccgtAgtgcagatagacaaactgag	12	9	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130982720	T	T	130982720	1	4	140	0	1	0	0	0	0	0	0	0	4710	435	15	5		5	DNM1	9	130982720	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	509232	130982720	10230711	238	122338											
GOLGA2	2801	broad.mit.edu	37	chr9	131029842	131029842	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgttctgtcccctcagtGtctaagccctctaacttcgt	7	13	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131029842	A	A	131029842	1	1	140	0	1	0	0	0	0	0	0	0	6616	1392	48	4		4	GOLGA2	9	131029842	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	47122	131029842	10183589	239	122339											
DDX31	64794	broad.mit.edu	37	chr9	135522364	135522364	+	Frame_Shift_Del	DEL	G	-	-													cctggaccgctttgtcctttGggttcaactggtcatggctc							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135522364	-	-	135522364	7	5	140	1	0	1	0	1	0	0	0	0	4389	1348	47	0	1234	0	DDX31	9	135522364	Frame_Shift_Del	DEL	G	TCGA-49-4507-01A-01D-1265-08	4492522	135522364	5691067	240	122340											
AKR1C1	1645	broad.mit.edu	37	chr10	5014908	5014909	+	Frame_Shift_Ins	INS	-	T	T													ttgtggtcctggccaagagcINStacaatgagcagcgcatcag							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5014909	T	T	5014908	7	5	140	1	0	1	1	0	0	0	0	0	469	796	28	0	839	0	AKR1C1	10	5014908	Frame_Shift_Ins	INS	-	TCGA-49-4507-01A-01D-1265-08		5014908	130519839	241	122341											
CDC123	8872	broad.mit.edu	37	chr10	12272994	12272994	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatccatgtatagaatatgAggtaagaagcttattttctt	8	4	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12272994	G	G	12272994	3	3	140	1	0	0	0	0	1	0	0	0	3085	318	11	5	514	5	CDC123	10	12272994	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	7258086	12272994	123261753	242	122342											
ITGA8	8516	broad.mit.edu	37	chr10	15655663	15655663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccggactaactcaccaggCagcagatgtcatagagtctg	10	12	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15655663	A	A	15655663	3	1	140	1	0	0	0	0	1	0	0	0	7952	710	25	3	1706	3	ITGA8	10	15655663	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	3382669	15655663	119879084	243	122343											
SLC39A12	221074	broad.mit.edu	37	chr10	18276417	18276417	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgacttagaatacggctAcagcacggtggctgtcaccc	10	12	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18276417	G	G	18276417	3	3	140	1	0	0	0	0	1	0	0	0	14729	391	14	5	1128	5	SLC39A12	10	18276417	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	2620754	18276417	117258330	244	122344											
GAD2	2572	broad.mit.edu	37	chr10	26582001	26582001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatgacatatgcctgtggCcttaggagacagcctacctg	10	10	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26582001	A	A	26582001	1	1	140	0	1	0	0	0	0	0	0	0	6240	754	26	3		3	GAD2	10	26582001	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	8305584	26582001	108952746	245	122345											
ANKRD30A	91074	broad.mit.edu	37	chr10	37422904	37422904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagttggcatgcttcttcaGcaaaatgttgacgtctttgc	9	8	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37422904	T	T	37422904	3	4	140	1	0	0	0	0	1	0	0	0	658	962	34	3	528	3	ANKRD30A	10	37422904	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	10840903	37422904	98111843	246	122346											
ANKRD30A	91074	broad.mit.edu	37	chr10	37423001	37423001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaagtgtttacgtttagaGgctaggtgagattttatagt	12	2	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37423001	T	T	37423001	1	4	140	0	1	0	0	0	0	0	0	0	658	1015	35	2		2	ANKRD30A	10	37423001	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	97	37423001	98111746	247	122347											
ANKRD30A	91074	broad.mit.edu	37	chr10	37430832	37430832	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccttggtggagggaacatCtgacaaaattcaatgtttgg	11	6	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37430832	G	G	37430832	3	3	140	1	0	0	0	0	1	0	0	0	658	913	32	4	865	4	ANKRD30A	10	37430832	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	7831	37430832	98103915	248	122348											
ANKRD30A	91074	broad.mit.edu	37	chr10	37508196	37508196	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctaaattgaaggaaaaaCaagacaaagaaatactagag	7	5	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37508196	G	G	37508196	3	3	140	1	0	0	0	0	1	0	0	0	658	479	17	4	3522	4	ANKRD30A	10	37508196	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	77364	37508196	98026551	249	122349											
LRRC18	474354	broad.mit.edu	37	chr10	50122229	50122229	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaagggagtgttagaagtTtattgttctgattggatagt	13	1	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50122229	C	C	50122229	1	2	140	0	1	0	0	0	0	0	0	0	9061	1856	64	5		5	LRRC18	10	50122229	5'UTR	SNP	T	TCGA-49-4507-01A-01D-1265-08	12614033	50122229	85412518	250	122350											
ZWINT	11130	broad.mit.edu	37	chr10	58119665	58119665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagggtggcctgctagcCtgcctccctgcaacactggg	14	13	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58119665	A	A	58119665	1	1	140	0	1	0	0	0	0	0	0	0	18378	696	24	2		2	ZWINT	10	58119665	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	7997436	58119665	77415082	251	122351											
SLC16A9	220963	broad.mit.edu	37	chr10	61413507	61413507	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataggcatgggctaattttTcaattcccacagtcttcgtg	8	10	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61413507	C	C	61413507	3	2	140	1	0	0	0	0	1	0	0	0	14528	1783	62	5	260	5	SLC16A9	10	61413507	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	3293842	61413507	74121240	252	122352											
ANK3	288	broad.mit.edu	37	chr10	61833291	61833291	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagttctgacaactcatcgtCatggtattctattgagtgtt	8	7	4	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61833291	T	T	61833291	3	4	140	1	0	0	0	0	1	0	0	0	622	826	29	4	6126	4	ANK3	10	61833291	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	419784	61833291	73701456	253	122353											
C10orf107	219621	broad.mit.edu	37	chr10	63450314	63450314	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttatatttcagcttatttCaacactacaagctatacgag	4	8	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63450314	G	G	63450314	3	3	140	1	0	0	0	0	1	0	0	0	1592	827	29	4	233	4	C10orf107	10	63450314	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1617023	63450314	72084433	254	122354											
CTNNA3	29119	broad.mit.edu	37	chr10	69423434	69423434	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaccacagccctggtgaatCatttcttattgaccttactt	5	12	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69423434	A	A	69423434	1	1	140	0	1	0	0	0	0	0	0	0	4048	841	29	3		3	CTNNA3	10	69423434	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	5973120	69423434	66111313	255	122355											
HK1	3098	broad.mit.edu	37	chr10	71154657	71154657	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaccgaggggtgacagtTctcctggccacttcccatag	12	12	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71154657	C	C	71154657	1	2	140	0	1	0	0	0	0	0	0	0	7257	1798	62	5		5	HK1	10	71154657	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	1731223	71154657	64380090	256	122356											
TACR2	6865	broad.mit.edu	37	chr10	71168868	71168868	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgggcagcggagggccCgggggcgactccgaagtctg	20	12	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71168868	G	G	71168868	1	3	140	0	1	0	0	0	0	0	0	0	15625	667	23	4		4	TACR2	10	71168868	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	14211	71168868	64365879	257	122357											
CDH23	64072	broad.mit.edu	37	chr10	73434908	73434908	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacctttggggaagtcagcTacttcttcagtgatgaccct	10	11	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73434908	C	C	73434908	3	2	140	1	0	0	0	0	1	0	0	0	3138	1522	53	5	1770	5	CDH23	10	73434908	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	2266040	73434908	62099839	258	122358											
DLG5	9231	broad.mit.edu	37	chr10	79581303	79581303	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggggtgtctgggggcgtTtgaaagtgttagggtcaaag	20	3	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79581303	G	G	79581303	3	3	140	1	0	0	0	0	1	0	0	0	4598	1841	64	5	2892	5	DLG5	10	79581303	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	6146395	79581303	55953444	259	122359											
POLR3A	11128	broad.mit.edu	37	chr10	79767754	79767754	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacaaacagaaattctcctCaaagcttttttttgggggga	9	7	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79767754	G	G	79767754	1	3	140	0	1	0	0	0	0	0	0	0	12323	841	29	4		4	POLR3A	10	79767754	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	186451	79767754	55766993	260	122360											
SFTPA1	653509	broad.mit.edu	37	chr10	81373955	81373955	+	3'UTR	DEL	A	-	-													cttggtctgtgagatgctagAactccctttcaacagaattc							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81373955	-	-	81373955	6	5	140	0	1	1	0	1	0	0	0	0	14302	261	9	0		0	SFTPA1	10	81373955	3'UTR	DEL	A	TCGA-49-4507-01A-01D-1265-08	1606201	81373955	54160792	261	122361											
ANXA11	311	broad.mit.edu	37	chr10	81930651	81930651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcggaggagggtaggcagCacctccccagggaccaccac	16	14	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81930651	A	A	81930651	3	1	140	1	0	0	0	0	1	0	0	0	716	710	25	3	1493	3	ANXA11	10	81930651	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	556696	81930651	53604096	262	122362											
NRG3	10718	broad.mit.edu	37	chr10	84733419	84733419	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaattatgtcttatctccTgctcctctagtcaggtgacc	6	12	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84733419	A	A	84733419	1	1	140	0	1	0	0	0	0	0	0	0	10744	1595	55	5		5	NRG3	10	84733419	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	2802768	84733419	50801328	263	122363											
NOC3L	64318	broad.mit.edu	37	chr10	96117824	96117824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatatgaatgattataacCcaaatgaagtattacctaga	7	5	0	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96117824	A	A	96117824	1	1	140	0	1	0	0	0	0	0	0	0	10609	638	22	2		2	NOC3L	10	96117824	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	11384405	96117824	39416923	264	122364											
TLL2	7093	broad.mit.edu	37	chr10	98145794	98145794	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatacagtccccaatcaatTagagcatggagacatacgtc	7	11	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98145794	A	A	98145794	1	1	140	0	1	0	0	0	0	0	0	0	16069	1769	61	5		5	TLL2	10	98145794	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	2027970	98145794	37388953	265	122365											
C10orf12	26148	broad.mit.edu	37	chr10	98741603	98741603	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaagggcatcagggctgagGataaatgattatgataacca	11	5	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98741603	A	A	98741603	2	1	140	1	0	0	0	0	0	0	0	1	1600	1165	41	4		4	C10orf12	10	98741603	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	595809	98741603	36793144	266	122366											
ARHGAP19	84986	broad.mit.edu	37	chr10	99024633	99024633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgggcaatgccttcctccGtcagtggggacccaaatatc	10	13	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99024633	A	A	99024633	3	1	140	1	0	0	0	0	1	0	0	0	871	1145	40	4	1171	4	ARHGAP19	10	99024633	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	283030	99024633	36510114	267	122367											
BLOC1S2	282991	broad.mit.edu	37	chr10	102035226	102035226	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaataagtttctcatcgcTtctccagcttcttgtacttg	6	10	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102035226	A	A	102035226	3	1	140	1	0	0	0	0	1	0	0	0	1455	1609	56	5	10	5	BLOC1S2	10	102035226	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	3010593	102035226	33499521	268	122368											
NFKB2	4791	broad.mit.edu	37	chr10	104160336	104160336	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaatggactatgaggtgtcGagattgaatggtcagggctg	16	4	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104160336	A	A	104160336	1	1	140	0	1	0	0	0	0	0	0	0	10471	1073	37	4		4	NFKB2	10	104160336	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	2125110	104160336	31374411	269	122369											
SFXN2	118980	broad.mit.edu	37	chr10	104495567	104495567	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttggggatgggggatggAcgggcctgtggggagatgtc	21	7	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104495567	T	T	104495567	1	4	140	0	1	0	0	0	0	0	0	0	14308	290	10	5		5	SFXN2	10	104495567	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	335231	104495567	31039180	270	122370											
SORCS1	114815	broad.mit.edu	37	chr10	108377865	108377865	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcacaagagaacctcctctGagcatgaagacagcagtaga	11	10	1	5			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108377865	T	T	108377865	1	4	140	0	1	0	0	0	0	0	0	0	15044	1305	45	3		3	SORCS1	10	108377865	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	3882298	108377865	27156882	271	122371											
VTI1A	143187	broad.mit.edu	37	chr10	114298101	114298101	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaaaccggtaagaattctGagagtgagcaaattgtcttg	12	5	2	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114298101	T	T	114298101	1	4	140	0	1	0	0	0	0	0	0	0	17362	1305	45	3		3	VTI1A	10	114298101	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	5920236	114298101	21236646	272	122372											
TCF7L2	6934	broad.mit.edu	37	chr10	114724537	114724537	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtggtggtggtggtgAtggtggtggtggtgatggtg	24	0	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114724537	G	G	114724537	1	3	140	0	1	0	0	0	0	0	0	0	15820	348	12	5		5	TCF7L2	10	114724537	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	426436	114724537	20810210	273	122373											
NRAP	4892	broad.mit.edu	37	chr10	115357597	115357597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggatttggttgcacatgGccctccaaaaatactgggag	12	8	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115357597	T	T	115357597	1	4	140	0	1	0	0	0	0	0	0	0	10733	1218	42	3		3	NRAP	10	115357597	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	633060	115357597	20177150	274	122374											
KIAA1598	57698	broad.mit.edu	37	chr10	118713525	118713525	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcataacggggtaaaaaataTgctcaataattaagcaaaga	7	5	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118713525	A	A	118713525	1	1	140	0	1	0	0	0	0	0	0	0	8316	1479	51	5		5	KIAA1598	10	118713525	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	3355928	118713525	16821222	275	122375											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122278335	122278335	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttttctgtctgttggtttTgttttgtagcggtgtccttg	11	5	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122278335	A	A	122278335	1	1	140	0	1	0	0	0	0	0	0	0	12389	1827	63	5		5	PPAPDC1A	10	122278335	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	3564810	122278335	13256412	276	122376											
PRAP1	118471	broad.mit.edu	37	chr10	135163597	135163597	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctctctggccccccctcAggctcctcctggtcaccagc	7	22	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135163597	C	C	135163597	5	2	140	1	0	0	0	0	0	0	1	0	12547	202	7	5	13	5	PRAP1	10	135163597	Splice_Site	SNP	A	TCGA-49-4507-01A-01D-1265-08	12885262	135163597	371150	277	122377											
CHID1	66005	broad.mit.edu	37	chr11	903105	903105	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaccggcttatctgaaaActgactctgaaataaaagga	8	8	2	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	903105	T	T	903105	3	4	140	1	0	0	0	0	1	0	0	0	3376	43	2	5	1107	5	CHID1	11	903105	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08		903105	134103411	278	122378											
MUC5B	727897	broad.mit.edu	37	chr11	1155683	1155683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaacatccagctacgccGcagccaggagtcagcggccc	10	15	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1155683	T	T	1155683	3	4	140	1	0	0	0	0	1	0	0	0	10073	1102	38	3		3	MUC5B	11	1155683	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	252578	1155683	133850833	279	122379											
TH	7054	broad.mit.edu	37	chr11	2193058	2193058	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgtctccacagccctggCccagcagcctcttataagct	7	18	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2193058	T	T	2193058	1	4	140	0	1	0	0	0	0	0	0	0	15961	754	26	4		4	TH	11	2193058	5'Flank	SNP	C	TCGA-49-4507-01A-01D-1265-08	1037375	2193058	132813458	280	122380											
NLRP10	338322	broad.mit.edu	37	chr11	7981504	7981504	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtgcttcatagattccAtctgttctttaaaatgcttc	6	8	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7981504	T	T	7981504	3	4	140	1	0	0	0	0	1	0	0	0	10567	217	8	5	316	5	NLRP10	11	7981504	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	5788446	7981504	127025012	281	122381											
NAV2	89797	broad.mit.edu	37	chr11	20066788	20066788	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcccaaagtcatctgcactCgtcagtcggtctgctggtcg	10	13	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20066788	A	A	20066788	2	1	140	1	0	0	0	0	0	0	0	1	10278	871	31	3		3	NAV2	11	20066788	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	12085284	20066788	114939728	282	122382											
SVIP	258010	broad.mit.edu	37	chr11	22848706	22848707	+	Intron	INS	-	C	C													ggattgctacttaagtttttINSttaaaatgccagttaagtta							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22848707	C	C	22848706	6	5	140	0	1	1	1	0	0	0	0	0	15540	1856	64	0		0	SVIP	11	22848706	Intron	INS	-	TCGA-49-4507-01A-01D-1265-08	2781918	22848706	112157810	283	122383											
LRRC4C	57689	broad.mit.edu	37	chr11	40136618	40136618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgtgaaatttaacgtacCatcactgagcacagctatcc	6	10	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40136618	A	A	40136618	3	1	140	1	0	0	0	0	1	0	0	0	9095	594	21	2	701	2	LRRC4C	11	40136618	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	17287912	40136618	94869898	284	122384											
OR5W2	390148	broad.mit.edu	37	chr11	55681268	55681268	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgatctagagaataggaaGaacttggccggaaatacata	10	6	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55681268	A	A	55681268	3	1	140	1	0	0	0	0	1	0	0	0	11279	942	33	4	143	4	OR5W2	11	55681268	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	15544650	55681268	79325248	285	122385											
OR8H2	390151	broad.mit.edu	37	chr11	55872945	55872945	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaaaaggctctgcctcGctctcatcactgggccttat	8	14	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55872945	C	C	55872945	3	2	140	1	0	0	0	0	1	0	0	0	11332	1087	38	4	429	4	OR8H2	11	55872945	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	191677	55872945	79133571	286	122386											
OR8K5	219453	broad.mit.edu	37	chr11	55927085	55927085	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccacatgtggagaaagCctttttcctgccctctgcag	10	12	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55927085	T	T	55927085	3	4	140	1	0	0	0	0	1	0	0	0	11339	739	26	4	217	4	OR8K5	11	55927085	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	54140	55927085	79079431	287	122387											
SLC22A8	9376	broad.mit.edu	37	chr11	62763436	62763436	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggaacagaggcaaggGgaggggccagcccaagagtg	19	9	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62763436	A	A	62763436	1	1	140	0	1	0	0	0	0	0	0	0	14574	1247	43	4		4	SLC22A8	11	62763436	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	6836351	62763436	72243080	288	122388											
CCDC88B	283234	broad.mit.edu	37	chr11	64119538	64119538	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcccttagccccccgcCtctcactcgatttccagcca	6	20	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64119538	T	T	64119538	1	4	140	0	1	0	0	0	0	0	0	0	2892	696	24	4		4	CCDC88B	11	64119538	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1356102	64119538	70886978	289	122389											
PACS1	55690	broad.mit.edu	37	chr11	65998230	65998230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggctggcagcagctttgGggttggaggggctatttcac	18	8	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65998230	T	T	65998230	1	4	140	0	1	0	0	0	0	0	0	0	11466	1247	43	2		2	PACS1	11	65998230	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	1878692	65998230	69008286	290	122390											
CPT1A	1374	broad.mit.edu	37	chr11	68566823	68566823	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcctcaccgactgtagatActgggattattgggggaaaa	13	7	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68566823	G	G	68566823	3	3	140	1	0	0	0	0	1	0	0	0	3863	405	14	5	1861	5	CPT1A	11	68566823	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	2568593	68566823	66439693	291	122391											
SHANK2	22941	broad.mit.edu	37	chr11	70319292	70319293	+	Missense_Mutation	DNP	TG	AA	AA													tccccagaagggggctggctTggaaggctaaagacatctga							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70319293	AA	AA	70319292	3	1	140	1	0	0	0	0	1	0	0	0	14378	1799	63	5	321	5	SHANK2	11	70319292	Missense_Mutation	DNP	TG	TCGA-49-4507-01A-01D-1265-08	1752469	70319292	64687224	292	122392											
HEPHL1	341208	broad.mit.edu	37	chr11	93844222	93844222	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agacaacctacacggtccttCgtaacataggtacggttgtc	9	11	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93844222	T	T	93844222	3	4	140	1	0	0	0	0	1	0	0	0	7122	884	31	4	3269	4	HEPHL1	11	93844222	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	23524930	93844222	41162294	293	122393											
CCDC82	79780	broad.mit.edu	37	chr11	96117783	96117783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaattcttcactatcaagCtcttcatcactatcaagtaa	2	11	8	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96117783	A	A	96117783	3	1	140	1	0	0	0	0	1	0	0	0	2884	796	28	3	1533	3	CCDC82	11	96117783	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	2273561	96117783	38888733	294	122394											
CUL5	8065	broad.mit.edu	37	chr11	107904543	107904543	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaagaataaaggttctcttCagtttgaagacaaatgggat	9	5	3	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107904543	T	T	107904543	4	4	140	1	0	0	0	0	0	1	0	0	4092	827	29	4	46	4	CUL5	11	107904543	Nonsense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	11786760	107904543	27101973	295	122395											
ATM	472	broad.mit.edu	37	chr11	108206578	108206578	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taattattctgaagggccgtGatgacctgagacaagatgct	11	7	1	5			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108206578	C	C	108206578	3	2	140	1	0	0	0	0	1	0	0	0	1113	1290	45	4	8376	4	ATM	11	108206578	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	302035	108206578	26799938	296	122396											
REXO2	25996	broad.mit.edu	37	chr11	114320783	114320783	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctgatggcttggcagagcAccttcggttaacttgcatct	11	11	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114320783	T	T	114320783	1	4	140	0	1	0	0	0	0	0	0	0	13350	174	6	5		5	REXO2	11	114320783	3'UTR	SNP	A	TCGA-49-4507-01A-01D-1265-08	6114205	114320783	20685733	297	122397											
TECTA	7007	broad.mit.edu	37	chr11	121039328	121039328	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcagcctgaaaaatggtaGgtaattgaataggtaacatt	9	5	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121039328	A	A	121039328	1	1	140	0	1	0	0	0	0	0	0	0	15869	1015	35	4		4	TECTA	11	121039328	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	6718545	121039328	13967188	298	122398											
SORL1	6653	broad.mit.edu	37	chr11	121454124	121454124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggacagttggtgggggatGgagatgaggggtgtgcgact	21	3	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121454124	T	T	121454124	1	4	140	0	1	0	0	0	0	0	0	0	15048	1363	47	2		2	SORL1	11	121454124	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	414796	121454124	13552392	299	122399											
VWA5A	4013	broad.mit.edu	37	chr11	124012959	124012959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgccaccatctgtgagCccctgttccactggtcatcc	8	17	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124012959	A	A	124012959	1	1	140	0	1	0	0	0	0	0	0	0	17369	754	26	3		3	VWA5A	11	124012959	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2558835	124012959	10993557	300	122400											
ROBO4	54538	broad.mit.edu	37	chr11	124763444	124763444	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgacagagaaatgaactatCagttggagttacaggagaga	12	4	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124763444	G	G	124763444	1	3	140	0	1	0	0	0	0	0	0	0	13627	841	29	4		4	ROBO4	11	124763444	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	750485	124763444	10243072	301	122401											
ADAMTS15	170689	broad.mit.edu	37	chr11	130332082	130332082	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccccgaccctcatccagatCgaccgtgccaacccctggtc	7	20	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130332082	T	T	130332082	2	4	140	1	0	0	0	0	0	0	0	1	260	874	31	4		4	ADAMTS15	11	130332082	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	5568638	130332082	4674434	302	122402											
NTM	50863	broad.mit.edu	37	chr11	131240725	131240725	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaccatccagccaaaaatGcacaattctatctcttgggc	5	12	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131240725	A	A	131240725	3	1	140	1	0	0	0	0	1	0	0	0	10794	1319	46	4	26	4	NTM	11	131240725	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	908643	131240725	3765791	303	122403											
PRMT8	56341	broad.mit.edu	37	chr12	3649868	3649868	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacccagctgcccaggaCggggcaagatgtccaagctg	12	14	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3649868	T	T	3649868	3	4	140	1	0	0	0	0	1	0	0	0	12648	527	19	4	178	4	PRMT8	12	3649868	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08		3649868	130202027	304	122404											
AKAP3	10566	broad.mit.edu	37	chr12	4744749	4744749	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctcttttatttgctaggtCagccttgtttcctgataaag	8	8	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4744749	A	A	4744749	1	1	140	0	1	0	0	0	0	0	0	0	452	841	29	3		3	AKAP3	12	4744749	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1094881	4744749	129107146	305	122405											
CLEC4A	50856	broad.mit.edu	37	chr12	8286793	8286793	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggtttctgctttgcatatCtcctgaagattttcattgtt	8	7	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8286793	G	G	8286793	1	3	140	0	1	0	0	0	0	0	0	0	3544	928	32	4		4	CLEC4A	12	8286793	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	3542044	8286793	125565102	306	122406											
KLRD1	3824	broad.mit.edu	37	chr12	10462245	10462245	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttactaaactgagtattGagccagcatttactccagga	7	9	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10462245	A	A	10462245	3	1	140	1	0	0	0	0	1	0	0	0	8490	1291	45	4	131	4	KLRD1	12	10462245	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	2175452	10462245	123389650	307	122407											
ETV6	2120	broad.mit.edu	37	chr12	12264089	12264089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatcgcgtcaccggcgtGccccaccatgtcagacgcag	11	17	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12264089	T	T	12264089	1	4	140	0	1	0	0	0	0	0	0	0	5325	1334	46	3		3	ETV6	12	12264089	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	1801844	12264089	121587806	308	122408											
OVCH1	341350	broad.mit.edu	37	chr12	29617436	29617436	+	Intron	DEL	T	-	-													tttatgcaacaaaaatatgcTtacctgcactgatgcttccc							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29617436	-	-	29617436	6	5	140	0	1	1	0	1	0	0	0	0	11417	1624	56	0		0	OVCH1	12	29617436	Intron	DEL	T	TCGA-49-4507-01A-01D-1265-08	17353347	29617436	104234459	309	122409											
SYT10	341359	broad.mit.edu	37	chr12	33592339	33592339	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccctggctgcccctgtccCgagggaagatgcccgagcac	13	17	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33592339	T	T	33592339	3	4	140	1	0	0	0	0	1	0	0	0	15585	652	23	4	1480	4	SYT10	12	33592339	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	3974903	33592339	100259556	310	122410											
COL2A1	1280	broad.mit.edu	37	chr12	48376795	48376795	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggtccagggagaagcaGggaggtggggaaaggagcag	21	4	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48376795	T	T	48376795	1	4	140	0	1	0	0	0	0	0	0	0	3719	1015	35	2		2	COL2A1	12	48376795	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	14784456	48376795	85475100	311	122411											
KRT6B	3854	broad.mit.edu	37	chr12	52842654	52842654	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacgtggtcgatctcagatCtcagcctctggatcatgcgg	12	11	4	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52842654	A	A	52842654	3	1	140	1	0	0	0	0	1	0	0	0	8552	913	32	3	535	3	KRT6B	12	52842654	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	4465859	52842654	81009241	312	122412											
KRT2	3849	broad.mit.edu	37	chr12	53045393	53045393	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagttttgatctgctcacgCtcttgggccttcacattctg	9	11	5	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53045393	G	G	53045393	3	3	140	1	0	0	0	0	1	0	0	0	8528	796	28	4	1421	4	KRT2	12	53045393	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	202739	53045393	80806502	313	122413											
ITGA7	3679	broad.mit.edu	37	chr12	56096921	56096921	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagtgcgattcgcctgcTgcccaggaagagccagggcc	13	15	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56096921	A	A	56096921	3	1	140	1	0	0	0	0	1	0	0	0	7951	1580	55	5	3439	5	ITGA7	12	56096921	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	3051528	56096921	77754974	314	122414											
BAZ2A	11176	broad.mit.edu	37	chr12	56992465	56992465	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctcgaagaagcggcgcatGatgtgcccagccttgcctac	11	14	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56992465	A	A	56992465	2	1	140	1	0	0	0	0	0	0	0	1	1336	1280	45	4		4	BAZ2A	12	56992465	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	895544	56992465	76859430	315	122415											
SHMT2	6472	broad.mit.edu	37	chr12	57626877	57626877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtgagctgtgcccttgGggcccaggtccgccagcttc	13	16	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57626877	T	T	57626877	1	4	140	0	1	0	0	0	0	0	0	0	14399	1247	43	2		2	SHMT2	12	57626877	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	634412	57626877	76225018	316	122416											
STAC3	246329	broad.mit.edu	37	chr12	57638883	57638883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgttccacagctgagCctctgatcctactccatctc	5	18	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57638883	A	A	57638883	1	1	140	0	1	0	0	0	0	0	0	0	15359	754	26	3		3	STAC3	12	57638883	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	12006	57638883	76213012	317	122417											
DTX3	196403	broad.mit.edu	37	chr12	58000292	58000292	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgccaattctaagctcttCaggatcaaagtaagcaaaaa	6	9	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58000292	T	T	58000292	1	4	140	0	1	0	0	0	0	0	0	0	4835	841	29	4		4	DTX3	12	58000292	5'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08	361409	58000292	75851603	318	122418											
IFNG	3458	broad.mit.edu	37	chr12	68549337	68549337	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatattctgctaatgtcatGatggtcagtgaaaataaaag	10	4	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68549337	A	A	68549337	1	1	140	0	1	0	0	0	0	0	0	0	7618	1305	45	4		4	IFNG	12	68549337	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	10549045	68549337	65302558	319	122419											
ZFC3H1	196441	broad.mit.edu	37	chr12	72029456	72029456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataatgggctccaagtagaCagtctatggctccttctagg	10	9	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72029456	A	A	72029456	1	1	140	0	1	0	0	0	0	0	0	0	17759	493	17	3		3	ZFC3H1	12	72029456	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	3480119	72029456	61822439	320	122420											
E2F7	144455	broad.mit.edu	37	chr12	77438638	77438638	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaagaaagactatacttGcagcttgccaaaatgatcta	6	9	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77438638	A	A	77438638	1	1	140	0	1	0	0	0	0	0	0	0	4912	1334	46	4		4	E2F7	12	77438638	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	5409182	77438638	56413257	321	122421											
ACSS3	79611	broad.mit.edu	37	chr12	81593168	81593168	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgatgtgatgtagagaccctGgaatggtccaaaaatgtctt	11	7	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81593168	C	C	81593168	2	2	140	1	0	0	0	0	0	0	0	1	190	1335	47	4		4	ACSS3	12	81593168	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	4154530	81593168	52258727	322	122422											
ALX1	8092	broad.mit.edu	37	chr12	85695254	85695254	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatttcatgggccatgtaaCatacagtactcttttatttt	5	7	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85695254	T	T	85695254	1	4	140	0	1	0	0	0	0	0	0	0	556	493	17	4		4	ALX1	12	85695254	3'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08	4102086	85695254	48156641	323	122423											
KERA	11081	broad.mit.edu	37	chr12	91449755	91449755	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttattttgttcttgtttaGatttatccatcttagctggg	9	5	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91449755	C	C	91449755	3	2	140	1	0	0	0	0	1	0	0	0	8213	933	33	4	762	4	KERA	12	91449755	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	5754501	91449755	42402140	324	122424											
ANKS1B	56899	broad.mit.edu	37	chr12	99640276	99640276	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacaggctctctccacaaatCcccctgcgttcataacccac	4	18	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99640276	G	G	99640276	3	3	140	1	0	0	0	0	1	0	0	0	689	855	30	4	1967	4	ANKS1B	12	99640276	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	8190521	99640276	34211619	325	122425											
SLC41A2	84102	broad.mit.edu	37	chr12	105199029	105199029	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcacccaatgctgttagGtaggggatggagaaactatc	12	7	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105199029	A	A	105199029	2	1	140	1	0	0	0	0	0	0	0	1	14744	1256	44	4		4	SLC41A2	12	105199029	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	5558753	105199029	28652866	326	122426											
PWP1	11137	broad.mit.edu	37	chr12	108103034	108103034	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatctccctgggtatctgtTttttatttattctgtttctg	7	7	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108103034	C	C	108103034	1	2	140	0	1	0	0	0	0	0	0	0	12951	1856	64	5		5	PWP1	12	108103034	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	2904005	108103034	25748861	327	122427											
CMKLR1	1240	broad.mit.edu	37	chr12	108686093	108686093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacagtcaccaccatgtgcCggctataccccacagggtcc	9	16	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108686093	A	A	108686093	3	1	140	1	0	0	0	0	1	0	0	0	3611	652	23	1	478	1	CMKLR1	12	108686093	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	583059	108686093	25165802	328	122428											
ISCU	23479	broad.mit.edu	37	chr12	108958090	108958090	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatcctagaaacgtgggGtcccttgacaagacatctaa	9	9	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108958090	T	T	108958090	2	4	140	1	0	0	0	0	0	0	0	1	7922	1248	44	3		3	ISCU	12	108958090	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	271997	108958090	24893805	329	122429											
CUX2	23316	broad.mit.edu	37	chr12	111772465	111772465	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtcccccgagctggacacGtactccatcaccaagagggt	10	14	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111772465	A	A	111772465	2	1	140	1	0	0	0	0	0	0	0	1	4098	1132	40	4		4	CUX2	12	111772465	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	2814375	111772465	22079430	330	122430											
MED13L	23389	broad.mit.edu	37	chr12	116418535	116418535	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtataaattttctaagttTctgtcctgccaatacctacc	4	10	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116418535	A	A	116418535	1	1	140	0	1	0	0	0	0	0	0	0	9524	1798	62	5		5	MED13L	12	116418535	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	4646070	116418535	17433360	331	122431											
PXMP2	5827	broad.mit.edu	37	chr12	133266994	133266994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggggtgggtttaccttGtagccgctgagtgcaaccaa	13	9	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133266994	T	T	133266994	1	4	140	0	1	0	0	0	0	0	0	0	12958	1392	48	3		3	PXMP2	12	133266994	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	16848459	133266994	584901	332	122432											
LRCH1	23143	broad.mit.edu	37	chr13	47279229	47279229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagatattacagagagaaGtgttttaaacctatatccta	6	7	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47279229	T	T	47279229	3	4	140	1	0	0	0	0	1	0	0	0	9019	1029	36	3	1473	3	LRCH1	13	47279229	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		47279229	67890649	333	122433											
FNDC3A	22862	broad.mit.edu	37	chr13	49761278	49761278	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaccaaaagacaatggcGgagcaaccatcaataaatat	6	10	1	1	rs140686831		TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49761278	T	T	49761278	4	4	140	1	0	0	0	0	0	1	0	0	6027	1117	39	1	1846	1	FNDC3A	13	49761278	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	2482049	49761278	65408600	334	122434											
THSD1	55901	broad.mit.edu	37	chr13	52952787	52952787	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcacttggctggccggcCgaacctcctccacagcgtga	12	16	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52952787	T	T	52952787	3	4	140	1	0	0	0	0	1	0	0	0	16000	652	23	4	1244	4	THSD1	13	52952787	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	3191509	52952787	62217091	335	122435											
MYH6	4624	broad.mit.edu	37	chr14	23851779	23851779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcttgctcctcctgtggtGggacagtggggatgggtgaa	18	7	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23851779	A	A	23851779	1	1	140	0	1	0	0	0	0	0	0	0	10132	1363	47	4		4	MYH6	14	23851779	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08		23851779	83497761	336	122436											
LTB4R	1241	broad.mit.edu	37	chr14	24785095	24785095	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttccttcacttcctggccCaaggcacctggagttttgga	9	12	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24785095	G	G	24785095	3	3	140	1	0	0	0	0	1	0	0	0	9158	595	21	4	240	4	LTB4R	14	24785095	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	933316	24785095	82564445	337	122437											
FSCB	84075	broad.mit.edu	37	chr14	44976337	44976337	+	Translation_Start_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaaatcacaaacgtaccaAgtgtcaaagactttcccttt	4	11	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44976337	T	T	44976337	1	4	140	1	0	0	0	0	0	0	0	0	6126	87	3	5		5	FSCB	14	44976337	Translation_Start_Site	SNP	A	TCGA-49-4507-01A-01D-1265-08	20191242	44976337	62373203	338	122438											
C14orf183	196913	broad.mit.edu	37	chr14	50559428	50559428	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatgtaatcccagcacttTaggaggctgaggcaggtgga	14	8	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50559428	C	C	50559428	1	2	140	0	1	0	0	0	0	0	0	0	1779	1769	61	5		5	C14orf183	14	50559428	5'Flank	SNP	T	TCGA-49-4507-01A-01D-1265-08	5583091	50559428	56790112	339	122439											
SYNE2	23224	broad.mit.edu	37	chr14	64476634	64476634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttgcaaagagaaagaacGgttttgctatttttggacat	9	5	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64476634	T	T	64476634	1	4	140	0	1	0	0	0	0	0	0	0	15565	1131	39	1		1	SYNE2	14	64476634	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	13917206	64476634	42872906	340	122440											
SPTB	6710	broad.mit.edu	37	chr14	65264598	65264598	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagtaggaagactgatgtTaagatctcatggccaaattt	10	5	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65264598	G	G	65264598	1	3	140	0	1	0	0	0	0	0	0	0	15236	1769	61	5		5	SPTB	14	65264598	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	787964	65264598	42084942	341	122441											
SLC8A3	6547	broad.mit.edu	37	chr14	70512629	70512629	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttctcttaggagaagtcCtaggcctgccctgctggagg	12	13	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70512629	T	T	70512629	1	4	140	0	1	0	0	0	0	0	0	0	14822	696	24	4		4	SLC8A3	14	70512629	3'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08	5248031	70512629	36836911	342	122442											
SIPA1L1	26037	broad.mit.edu	37	chr14	72176135	72176135	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagccacggcagcacagcctCgctgggggctgccacatcgt	13	16	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72176135	T	T	72176135	3	4	140	1	0	0	0	0	1	0	0	0	14442	893	31	4	4079	4	SIPA1L1	14	72176135	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1663506	72176135	35173405	343	122443											
TMED10	10972	broad.mit.edu	37	chr14	75643092	75643092	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaggccgccagcgcccccaGactggtcggagatctcgtac	13	16	1	2	rs4929		TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75643092	A	A	75643092	3	1	140	1	0	0	0	0	1	0	0	0	16126	942	33	4	488	4	TMED10	14	75643092	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	3466957	75643092	31706448	344	122444											
KIAA1409	57578	broad.mit.edu	37	chr14	94121688	94121688	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggattctcctagtagcctcTggaccacaattagcaaccag	8	12	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94121688	A	A	94121688	3	1	140	1	0	0	0	0	1	0	0	0	8300	1580	55	5	6119	5	KIAA1409	14	94121688	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	18478596	94121688	13227852	345	122445											
DIO3	1735	broad.mit.edu	37	chr14	102028628	102028628	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcgtctctatgtcatccaGagtggcactattatgtacca	9	10	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102028628	T	T	102028628	3	4	140	1	0	0	0	0	1	0	0	0	4566	933	33	3	797	3	DIO3	14	102028628	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	7906940	102028628	5320912	346	122446											
TRPM1	4308	broad.mit.edu	37	chr15	31338468	31338468	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaggaagaaaaaaaatcaAtttacttagataactaatgt	6	3	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31338468	G	G	31338468	1	3	140	0	1	0	0	0	0	0	0	0	16710	116	4	5		5	TRPM1	15	31338468	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08		31338468	71192924	347	122447											
DUOX2	50506	broad.mit.edu	37	chr15	45396622	45396622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaagcctatgctggaaGcagttcagtgacccttcata	11	9	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45396622	A	A	45396622	1	1	140	0	1	0	0	0	0	0	0	0	4841	986	34	4		4	DUOX2	15	45396622	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	14058154	45396622	57134770	348	122448											
WDR72	256764	broad.mit.edu	37	chr15	53889352	53889352	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctttggcagcatctgcttCatctcacagttaccattctc	6	13	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53889352	T	T	53889352	3	4	140	1	0	0	0	0	1	0	0	0	17449	826	29	4	248	4	WDR72	15	53889352	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	8492730	53889352	48642040	349	122449											
COMMD4	54939	broad.mit.edu	37	chr15	75631620	75631620	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagagcacgcggccagccTgtgccgctgttatgaggaga	14	13	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75631620	C	C	75631620	3	2	140	1	0	0	0	0	1	0	0	0	3750	1580	55	5	339	5	COMMD4	15	75631620	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	21742268	75631620	26899772	350	122450											
MCTP2	55784	broad.mit.edu	37	chr15	94836784	94836784	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacttggccccagagggccGgccttactccaggccacggt	14	15	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94836784	A	A	94836784	1	1	140	0	1	0	0	0	0	0	0	0	9494	1131	39	4		4	MCTP2	15	94836784	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	19205164	94836784	7694608	351	122451											
CHSY1	22856	broad.mit.edu	37	chr15	101719204	101719204	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctgttacaggaaaaaaaaGagatcacaaatttagtattg	7	4	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101719204	C	C	101719204	1	2	140	0	1	0	0	0	0	0	0	0	3443	957	33	4		4	CHSY1	15	101719204	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	6882420	101719204	812188	352	122452											
NUBP2	10101	broad.mit.edu	37	chr16	1838029	1838029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcgtggagaatatgagcGgcttcacctgcccacactgc	11	12	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1838029	T	T	1838029	3	4	140	1	0	0	0	0	1	0	0	0	10811	1116	39	1	595	1	NUBP2	16	1838029	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		1838029	88516724	353	122453											
TBL3	10607	broad.mit.edu	37	chr16	2025660	2025660	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcctcaccgccaccgcCgaccacaacctgttgctcta	8	18	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2025660	T	T	2025660	2	4	140	1	0	0	0	0	0	0	0	1	15765	639	23	4		4	TBL3	16	2025660	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	187631	2025660	88329093	354	122454											
ZNF263	10127	broad.mit.edu	37	chr16	3340426	3340426	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgagtgcggagacagcttCtctcacagctccaatcggat	10	12	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3340426	G	G	3340426	3	3	140	1	0	0	0	0	1	0	0	0	17929	912	32	4	1942	4	ZNF263	16	3340426	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1314766	3340426	87014327	355	122455											
ZNF75A	7627	broad.mit.edu	37	chr16	3366835	3366835	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtaaaatgtctttggtcatCctgaaacagtctgggattag	10	6	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3366835	T	T	3366835	1	4	140	0	1	0	0	0	0	0	0	0	18262	870	30	4		4	ZNF75A	16	3366835	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	26409	3366835	86987918	356	122456											
NDE1	54820	broad.mit.edu	37	chr16	15771720	15771720	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagccttggaggatgacctCgcgcagaccaaagccattaa	10	12	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15771720	T	T	15771720	2	4	140	1	0	0	0	0	0	0	0	1	10338	871	31	4		4	NDE1	16	15771720	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	12404885	15771720	74583033	357	122457											
XYLT1	64131	broad.mit.edu	37	chr16	17232177	17232177	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtttgttgggaaggcatcActtaggaggctggcagacca	15	7	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17232177	G	G	17232177	1	3	140	0	1	0	0	0	0	0	0	0	17590	174	6	5		5	XYLT1	16	17232177	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	1460457	17232177	73122576	358	122458											
GP2	2813	broad.mit.edu	37	chr16	20331722	20331722	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccccaaacccaggcctccCagcaaacatttgtccacctt	4	19	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20331722	T	T	20331722	2	4	140	1	0	0	0	0	0	0	0	1	6647	581	21	4		4	GP2	16	20331722	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	3099545	20331722	70023031	359	122459											
OTOA	146183	broad.mit.edu	37	chr16	21747771	21747771	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattaatgttttgggcaggGtccctgacatcaagaggcct	11	8	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21747771	A	A	21747771	1	1	140	0	1	0	0	0	0	0	0	0	11396	1276	44	4		4	OTOA	16	21747771	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	1416049	21747771	68606982	360	122460											
FUS	2521	broad.mit.edu	37	chr16	31202719	31202719	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttttttttgcaGgggtgagcacagacaggatc	10	5	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31202719	T	T	31202719	5	4	140	1	0	0	0	0	0	0	1	0	6160	1014	35	2	1599	2	FUS	16	31202719	Splice_Site	SNP	G	TCGA-49-4507-01A-01D-1265-08	9454948	31202719	59152034	361	122461											
NKD1	85407	broad.mit.edu	37	chr16	50664759	50664759	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagagcgcaaggccccgAgcagagaccaagcccactga	12	15	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50664759	C	C	50664759	2	2	140	1	0	0	0	0	0	0	0	1	10536	291	11	5		5	NKD1	16	50664759	Silent	SNP	A	TCGA-49-4507-01A-01D-1265-08	19462040	50664759	39689994	362	122462											
C16orf48	84080	broad.mit.edu	37	chr16	67698894	67698894	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttctggctccctgaagcaGgtacctggagctgggccttg	13	12	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67698894	A	A	67698894	1	1	140	0	1	0	0	0	0	0	0	0	1830	1015	35	4		4	C16orf48	16	67698894	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	17034135	67698894	22655859	363	122463											
PRMT7	54496	broad.mit.edu	37	chr16	68386106	68386106	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttaacactcctggacCgagccctactgacacctggg	9	15	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68386106	T	T	68386106	1	4	140	0	1	0	0	0	0	0	0	0	12647	667	23	4		4	PRMT7	16	68386106	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	687212	68386106	21968647	364	122464											
CDH1	999	broad.mit.edu	37	chr16	68842775	68842775	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatctcttagaagcttgtTgacaccggggtaacatccac	9	10	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68842775	G	G	68842775	1	3	140	0	1	0	0	0	0	0	0	0	3125	1827	63	5		5	CDH1	16	68842775	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	456669	68842775	21511978	365	122465											
CDH1	999	broad.mit.edu	37	chr16	68842791	68842791	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgacaccggggtaacaTccacccaggattttttggtc	10	10	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68842791	G	G	68842791	1	3	140	0	1	0	0	0	0	0	0	0	3125	1450	50	5		5	CDH1	16	68842791	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	16	68842791	21511962	366	122466											
ST3GAL2	6483	broad.mit.edu	37	chr16	70432107	70432107	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcttaccatccaccacctCtggacgtccggtggaagatc	9	15	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70432107	G	G	70432107	3	3	140	1	0	0	0	0	1	0	0	0	15333	912	32	4	749	4	ST3GAL2	16	70432107	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	1589316	70432107	19922646	367	122467											
PKD1L2	114780	broad.mit.edu	37	chr16	81181822	81181823	+	Missense_Mutation	DNP	CC	AA	AA													caggttgggggacccccggtCccattttccagtgttctgct							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	81181823	AA	AA	81181822	3	1	140	1	0	0	0	0	1	0	0	0	12060	855	30	3	2544	3	PKD1L2	16	81181822	Missense_Mutation	DNP	CC	TCGA-49-4507-01A-01D-1265-08	10749715	81181822	9172931	368	122468											
PLCG2	5336	broad.mit.edu	37	chr16	81934172	81934172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtggggcagatgcagagGtgtgtgctccccctgccgag	16	11	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81934172	T	T	81934172	1	4	140	0	1	0	0	0	0	0	0	0	12131	1276	44	3		3	PLCG2	16	81934172	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	752350	81934172	8420581	369	122469											
MBTPS1	8720	broad.mit.edu	37	chr16	84096830	84096833	+	Intron	DEL	CTCA	-	-													gtcggctgatctgccagcatCtcacgggcgcctttccagag							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84096833	-	-	84096830	6	5	140	0	1	1	0	1	0	0	0	0	9454	928	32	0		0	MBTPS1	16	84096830	Intron	DEL	CTCA	TCGA-49-4507-01A-01D-1265-08	2162658	84096830	6257923	370	122470											
RILP	83547	broad.mit.edu	37	chr17	1549747	1549747	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccctaagtcaggcctctgGggcggctgaggcccccagac	13	16	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1549747	A	A	1549747	3	1	140	1	0	0	0	0	1	0	0	0	13469	1232	43	4	14	4	RILP	17	1549747	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		1549747	79645463	371	122471											
ANKFY1	51479	broad.mit.edu	37	chr17	4098995	4098995	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagctcaaggaagtgatctCaaatactccccaactcaatc	5	13	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4098995	G	G	4098995	1	3	140	0	1	0	0	0	0	0	0	0	626	841	29	4		4	ANKFY1	17	4098995	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2549248	4098995	77096215	372	122472											
GAS7	8522	broad.mit.edu	37	chr17	9850262	9850262	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcagcagctgctgttcCggcatcgtgtctgggtgagg	16	9	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9850262	G	G	9850262	2	3	140	1	0	0	0	0	0	0	0	1	6312	639	23	4		4	GAS7	17	9850262	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	5751267	9850262	71344948	373	122473											
C17orf48	56985	broad.mit.edu	37	chr17	10614103	10614103	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccatttatttttatagaaGagatatttcttaattggctc	6	5	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10614103	A	A	10614103	1	1	140	0	1	0	0	0	0	0	0	0	1875	957	33	4		4	C17orf48	17	10614103	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	763841	10614103	70581107	374	122474											
DNAH9	1770	broad.mit.edu	37	chr17	11757475	11757475	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggccaaagtggatggcttCctggactcgctaataaactt	10	9	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11757475	T	T	11757475	2	4	140	1	0	0	0	0	0	0	0	1	4648	854	30	4		4	DNAH9	17	11757475	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	1143372	11757475	69437735	375	122475											
MAP2K4	6416	broad.mit.edu	37	chr17	12044436	12044436	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggctgtcatacaaacttttGacttttttgttttcaatttt	6	6	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12044436	T	T	12044436	1	4	140	0	1	0	0	0	0	0	0	0	9331	1305	45	3		3	MAP2K4	17	12044436	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	286961	12044436	69150774	376	122476											
SLC47A1	55244	broad.mit.edu	37	chr17	19470020	19470020	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgctgagattacaggcatGagccactgcgcctagccaga	12	11	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19470020	A	A	19470020	1	1	140	0	1	0	0	0	0	0	0	0	14761	1305	45	4		4	SLC47A1	17	19470020	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	7425584	19470020	61725190	377	122477											
UTP6	55813	broad.mit.edu	37	chr17	30228700	30228700	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaacagcgaacacgagcaGgaagctcccggtttcaggtt	11	12	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30228700	A	A	30228700	1	1	140	0	1	0	0	0	0	0	0	0	17229	1015	35	4		4	UTP6	17	30228700	5'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	10758680	30228700	50966510	378	122478											
PEX12	5193	broad.mit.edu	37	chr17	33904426	33904426	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctttgggagaccagcactaGccaatctctgagacttgtga	11	10	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33904426	C	C	33904426	3	2	140	1	0	0	0	0	1	0	0	0	11835	971	34	4	776	4	PEX12	17	33904426	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	3675726	33904426	47290784	379	122479											
TTC25	83538	broad.mit.edu	37	chr17	40117580	40117580	+	3'UTR	DEL	A	-	-													ttaaactggattttcaagcgAtttgtctgttataggaaaaa							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40117580	-	-	40117580	6	5	140	0	1	1	0	1	0	0	0	0	16819	348	12	0		0	TTC25	17	40117580	3'UTR	DEL	A	TCGA-49-4507-01A-01D-1265-08	6213154	40117580	41077630	380	122480											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46054189	46054189	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccggaatcagattcaaagGtgaggaggccttctcagtct	11	10	4	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46054189	A	A	46054189	5	1	140	1	0	0	0	0	0	0	1	0	3177	1275	44	4	944	4	CDK5RAP3	17	46054189	Splice_Site	SNP	G	TCGA-49-4507-01A-01D-1265-08	5936609	46054189	35141021	381	122481											
B4GALNT2	124872	broad.mit.edu	37	chr17	47247054	47247054	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccagttcaagctggccctCcactacttcaagaaccatct	6	15	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47247054	T	T	47247054	2	4	140	1	0	0	0	0	0	0	0	1	1272	842	30	4		4	B4GALNT2	17	47247054	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	1192865	47247054	33948156	382	122482											
MYCBPAP	84073	broad.mit.edu	37	chr17	48603496	48603496	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagagtggggaccaagagTcctcagcggaagagcatcat	14	10	2	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48603496	C	C	48603496	2	2	140	1	0	0	0	0	0	0	0	1	10113	1664	58	5		5	MYCBPAP	17	48603496	Silent	SNP	T	TCGA-49-4507-01A-01D-1265-08	1356442	48603496	32591714	383	122483											
MYCBPAP	84073	broad.mit.edu	37	chr17	48605672	48605672	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacacctctgcatagccctCctcatctctctgaatggaca	5	17	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48605672	T	T	48605672	1	4	140	0	1	0	0	0	0	0	0	0	10113	870	30	4		4	MYCBPAP	17	48605672	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2176	48605672	32589538	384	122484											
LUC7L3	51747	broad.mit.edu	37	chr17	48821878	48821878	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaagttgaccacttgtagTccaatattactgatttgggg	9	6	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48821878	C	C	48821878	1	2	140	0	1	0	0	0	0	0	0	0	9171	1682	58	5		5	LUC7L3	17	48821878	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	216206	48821878	32373332	385	122485											
DGKE	8526	broad.mit.edu	37	chr17	54926178	54926178	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccagttgcgcaggttttgcGaaatgtaatggaagcagatg	13	6	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54926178	A	A	54926178	3	1	140	1	0	0	0	0	1	0	0	0	4508	1058	37	4	1028	4	DGKE	17	54926178	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	6104300	54926178	26269032	386	122486											
SCN4A	6329	broad.mit.edu	37	chr17	62029071	62029071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcctccccgaggctgaGcatgatgtccttggggctca	13	13	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62029071	T	T	62029071	3	4	140	1	0	0	0	0	1	0	0	0	14033	971	34	3	2988	3	SCN4A	17	62029071	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	7102893	62029071	19166139	387	122487											
LRRC37A3	374819	broad.mit.edu	37	chr17	62854865	62854865	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacaaagacaggactgcaTtctgaaaacctgaattaatt	6	9	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62854865	C	C	62854865	1	2	140	0	1	0	0	0	0	0	0	0	9080	1508	52	5		5	LRRC37A3	17	62854865	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	825794	62854865	18340345	388	122488											
ABCA6	23460	broad.mit.edu	37	chr17	67080280	67080280	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatttgttttcctgataaTataaattatttccactgaat	3	5	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67080280	C	C	67080280	1	2	140	0	1	0	0	0	0	0	0	0	36	1421	49	5		5	ABCA6	17	67080280	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	4225415	67080280	14114930	389	122489											
SDK2	54549	broad.mit.edu	37	chr17	71375670	71375670	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctcatccgtatctcgtacCgcctgtgcttgttcaggtct	9	14	4	0	rs143525062		TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71375670	T	T	71375670	3	4	140	1	0	0	0	0	1	0	0	0	14082	652	23	4	1781	4	SDK2	17	71375670	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	4295390	71375670	9819540	390	122490											
SDK2	54549	broad.mit.edu	37	chr17	71429966	71429966	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgtgctgtccagggggcctCtggtgatgttaggggcgatg	18	9	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71429966	T	T	71429966	3	4	140	1	0	0	0	0	1	0	0	0	14082	913	32	4	5445	4	SDK2	17	71429966	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	54296	71429966	9765244	391	122491											
DNAI2	64446	broad.mit.edu	37	chr17	72310156	72310156	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgctcagcgacccaggcttCagccatttggctgctttggt	12	12	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72310156	A	A	72310156	1	1	140	0	1	0	0	0	0	0	0	0	4650	841	29	3		3	DNAI2	17	72310156	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	880190	72310156	8885054	392	122492											
KIF19	124602	broad.mit.edu	37	chr17	72322631	72322631	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgccaccccactgagaggaCaggcaacgaccagggccggg	14	16	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72322631	T	T	72322631	1	4	140	0	1	0	0	0	0	0	0	0	8352	493	17	4		4	KIF19	17	72322631	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	12475	72322631	8872579	393	122493											
KIF19	124602	broad.mit.edu	37	chr17	72350682	72350682	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggaggtcccgatccttcgAggtcaccgggcaaggggtga	17	11	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72350682	T	T	72350682	3	4	140	1	0	0	0	0	1	0	0	0	8352	304	11	5	2760	5	KIF19	17	72350682	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	28051	72350682	8844528	394	122494											
OTOP2	92736	broad.mit.edu	37	chr17	72920942	72920944	+	In_Frame_Del	DEL	TGG	-	-													gctcactgcgatgatgctgcTggcaacgctctggatcctct							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72920944	-	-	72920942	7	5	140	1	0	1	0	1	0	0	0	0	11400	1580	55	0	217	0	OTOP2	17	72920942	In_Frame_Del	DEL	TGG	TCGA-49-4507-01A-01D-1265-08	570260	72920942	8274268	395	122495											
ST6GALNAC2	10610	broad.mit.edu	37	chr17	74583259	74583259	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatctgttcttcatgtatccGaggaagtctgggtgcagcaa	11	8	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74583259	A	A	74583259	1	1	140	0	1	0	0	0	0	0	0	0	15342	1073	37	4		4	ST6GALNAC2	17	74583259	5'Flank	SNP	G	TCGA-49-4507-01A-01D-1265-08	1662317	74583259	6611951	396	122496											
CCDC40	55036	broad.mit.edu	37	chr17	78071218	78071218	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacaggtaaacgtgtcccagGaggtccctggggatgacggc	16	10	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78071218	T	T	78071218	1	4	140	0	1	0	0	0	0	0	0	0	2839	1189	41	3		3	CCDC40	17	78071218	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	3487959	78071218	3123992	397	122497											
HGS	9146	broad.mit.edu	37	chr17	79650969	79650969	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaccccgcctcctcgcgGctctagggccggcgcggtga	15	16	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79650969	A	A	79650969	1	1	140	0	1	0	0	0	0	0	0	0	7154	1218	42	4		4	HGS	17	79650969	5'Flank	SNP	G	TCGA-49-4507-01A-01D-1265-08	1579751	79650969	1544241	398	122498											
YES1	7525	broad.mit.edu	37	chr18	743353	743353	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcatcttttgctagaccttGagtctgaggtttcacagttg	10	8	3	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	743353	A	A	743353	4	1	140	1	0	0	0	0	0	1	0	0	17601	1299	45	4	868	4	YES1	18	743353	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08		743353	77333895	399	122499											
NOL4	8715	broad.mit.edu	37	chr18	31538324	31538324	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttagtgagaggtcctcagctCctcggtctacactctcattt	8	12	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31538324	G	G	31538324	3	3	140	1	0	0	0	0	1	0	0	0	10619	855	30	4	821	4	NOL4	18	31538324	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	30794971	31538324	46538924	400	122500											
ATP5A1	498	broad.mit.edu	37	chr18	43666068	43666068	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgaccaaatgaagaaaaGaacaacttacaatactgtcc	5	10	0	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43666068	C	C	43666068	1	2	140	0	1	0	0	0	0	0	0	0	1151	957	33	4		4	ATP5A1	18	43666068	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	12127744	43666068	34411180	401	122501											
PIAS2	9063	broad.mit.edu	37	chr18	44409662	44409662	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgataatgttgcacgagtctCactgctttactctctgctgc	8	11	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44409662	T	T	44409662	1	4	140	0	1	0	0	0	0	0	0	0	11971	841	29	4		4	PIAS2	18	44409662	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	743594	44409662	33667586	402	122502											
LIPG	9388	broad.mit.edu	37	chr18	47091826	47091826	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccttagaagactgcagtttCaacatgacagctaaaacctt	6	11	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47091826	G	G	47091826	3	3	140	1	0	0	0	0	1	0	0	0	8896	825	29	4	243	4	LIPG	18	47091826	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	2682164	47091826	30985422	403	122503											
CDH20	28316	broad.mit.edu	37	chr18	59072164	59072164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcaatgatagccagtgtgCatactctgtagtattttcct	8	8	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59072164	A	A	59072164	1	1	140	0	1	0	0	0	0	0	0	0	3136	725	25	3		3	CDH20	18	59072164	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	11980338	59072164	19005084	404	122504											
SERPINB3	6317	broad.mit.edu	37	chr18	61322852	61322852	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttaccagaacatctgcaGgtgaacattttccaaatgga	8	8	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61322852	T	T	61322852	1	4	140	0	1	0	0	0	0	0	0	0	14215	1015	35	2		2	SERPINB3	18	61322852	3'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	2250688	61322852	16754396	405	122505											
SERPINB3	6317	broad.mit.edu	37	chr18	61323171	61323171	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattcccatggttctcaacGtgtccttgaggtcatagctc	8	13	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61323171	A	A	61323171	3	1	140	1	0	0	0	0	1	0	0	0	14215	1145	40	4	283	4	SERPINB3	18	61323171	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	319	61323171	16754077	406	122506											
STK11	6794	broad.mit.edu	37	chr19	1220434	1220434	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagggcattgtgcacaaggAcatcaagccggggaacctgc	13	12	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1220434	C	C	1220434	3	2	140	1	0	0	0	0	1	0	0	0	15405	275	10	5	541	5	STK11	19	1220434	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08		1220434	57908549	407	122507											
MUC16	94025	broad.mit.edu	37	chr19	9071203	9071203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtggaatgatgcatggCggcttctgtgtgtgcagtgt	16	5	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9071203	T	T	9071203	3	4	140	1	0	0	0	0	1	0	0	0	10067	768	27	4	27608	4	MUC16	19	9071203	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	7850769	9071203	50057780	408	122508											
ZNF177	7730	broad.mit.edu	37	chr19	9491726	9491726	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcagtgactatggcaaaaTatctccccttagtgtccaca	7	11	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9491726	A	A	9491726	1	1	140	0	1	0	0	0	0	0	0	0	17872	1406	49	5		5	ZNF177	19	9491726	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	420523	9491726	49637257	409	122509											
KEAP1	9817	broad.mit.edu	37	chr19	10600238	10600238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgagggttgcaacagGgggtctctcccaggcctggc	15	12	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10600238	T	T	10600238	1	4	140	0	1	0	0	0	0	0	0	0	8211	1247	43	2		2	KEAP1	19	10600238	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	1108512	10600238	48528745	410	122510											
KEAP1	9817	broad.mit.edu	37	chr19	10600447	10600447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccacggcataaaggagacGattgaggacagccacgccca	11	14	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10600447	A	A	10600447	3	1	140	1	0	0	0	0	1	0	0	0	8211	1058	37	4	478	4	KEAP1	19	10600447	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	209	10600447	48528536	411	122511											
RGL3	57139	broad.mit.edu	37	chr19	11512648	11512648	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagttggtgacccaggctCagctggggtggggctgggac	18	10	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11512648	A	A	11512648	1	1	140	0	1	0	0	0	0	0	0	0	13386	841	29	3		3	RGL3	19	11512648	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	912201	11512648	47616335	412	122512											
B3GNT3	10331	broad.mit.edu	37	chr19	17922725	17922725	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttcctgggtatgtgtctgGagcttgagggactgaagcct	14	8	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17922725	C	C	17922725	3	2	140	1	0	0	0	0	1	0	0	0	1263	1175	41	4	919	4	B3GNT3	19	17922725	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	6410077	17922725	41206258	413	122513											
ZNF43	7594	broad.mit.edu	37	chr19	21990838	21990838	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtatgaattatcttatgTttagtaagggttgaggacca	10	5	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21990838	A	A	21990838	3	1	140	1	0	0	0	0	1	0	0	0	18030	1722	60	5	432	5	ZNF43	19	21990838	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	4068113	21990838	37138145	414	122514											
ZNF681	148213	broad.mit.edu	37	chr19	23927473	23927473	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtagtaagggttaaggaCtgattaaaggctttgtcaca	12	4	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23927473	T	T	23927473	2	4	140	1	0	0	0	0	0	0	0	1	18215	564	20	4		4	ZNF681	19	23927473	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	1936635	23927473	35201510	415	122515											
POLR2I	5438	broad.mit.edu	37	chr19	36604905	36604905	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagatacttagaaagccctCgcgccacttacctcggcccg	8	17	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36604905	A	A	36604905	1	1	140	0	1	0	0	0	0	0	0	0	12317	899	31	3		3	POLR2I	19	36604905	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	12677432	36604905	22524078	416	122516											
CATSPERG	57828	broad.mit.edu	37	chr19	38860671	38860671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaaggcatctttgcccCtgaattcttcttcaaggtgt	7	13	4	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38860671	A	A	38860671	3	1	140	1	0	0	0	0	1	0	0	0	2718	681	24	2	3182	2	CATSPERG	19	38860671	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	2255766	38860671	20268312	417	122517											
RYR1	6261	broad.mit.edu	37	chr19	39076591	39076591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccaggtctgatcatcgaCgcttttggtgagctccgaga	11	12	2	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39076591	A	A	39076591	3	1	140	1	0	0	0	0	1	0	0	0	13879	535	19	3	15227	3	RYR1	19	39076591	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	215920	39076591	20052392	418	122518											
CYP2A7	1549	broad.mit.edu	37	chr19	41450829	41450829	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaacttgagaaaaaaaatGacaggtccttattaattgag	7	6	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41450829	T	T	41450829	1	4	140	0	1	0	0	0	0	0	0	0	4196	1305	45	3		3	CYP2A7	19	41450829	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	2374238	41450829	17678154	419	122519											
CYP2A13	1553	broad.mit.edu	37	chr19	41596044	41596044	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgtgggcaagcgcggcatcGaggaacgcatccaggaggag	18	10	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41596044	T	T	41596044	4	4	140	1	0	0	0	0	0	1	0	0	4194	1059	37	3	446	3	CYP2A13	19	41596044	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	145215	41596044	17532939	420	122520											
CEACAM4	1089	broad.mit.edu	37	chr19	42126015	42126015	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtcccctggagcctgcggGaccagaacatccatggccca	13	15	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42126015	T	T	42126015	1	4	140	0	1	0	0	0	0	0	0	0	3224	1189	41	3		3	CEACAM4	19	42126015	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	529971	42126015	17002968	421	122521											
PSG8	440533	broad.mit.edu	37	chr19	43266869	43266869	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaagatctgagggggaggCctggacatgttttttccact	13	8	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43266869	A	A	43266869	1	1	140	0	1	0	0	0	0	0	0	0	12767	754	26	3		3	PSG8	19	43266869	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1140854	43266869	15862114	422	122522											
PRKD2	25865	broad.mit.edu	37	chr19	47207494	47207494	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcctggcaaacggtgggcCgtgtatagctgtggatgagg	17	7	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47207494	T	T	47207494	3	4	140	1	0	0	0	0	1	0	0	0	12625	652	23	4	1871	4	PRKD2	19	47207494	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	3940625	47207494	11921489	423	122523											
CARD8	22900	broad.mit.edu	37	chr19	48737602	48737602	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcctctaattctcatgttCctctgtgatattgagacaca	5	10	3	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48737602	A	A	48737602	1	1	140	0	1	0	0	0	0	0	0	0	2677	870	30	3		3	CARD8	19	48737602	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1530108	48737602	10391381	424	122524											
HSD17B14	51171	broad.mit.edu	37	chr19	49316528	49316528	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacgagcagttcaatgccCgtgcagaagttggcttcgga	13	10	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49316528	A	A	49316528	2	1	140	1	0	0	0	0	0	0	0	1	7450	639	23	1		1	HSD17B14	19	49316528	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	578926	49316528	9812455	425	122525											
MYADM	91663	broad.mit.edu	37	chr19	54377186	54377186	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtcccacggccgttcgcggGaccacgccatcgccgccacc	11	20	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54377186	C	C	54377186	3	2	140	1	0	0	0	0	1	0	0	0	10100	1174	41	4	405	4	MYADM	19	54377186	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	5060658	54377186	4751797	426	122526											
LENG8	114823	broad.mit.edu	37	chr19	54963275	54963275	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctctctctctgcaggtcttCtcagtacagcatggtggctg	10	13	4	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54963275	T	T	54963275	3	4	140	1	0	0	0	0	1	0	0	0	8796	913	32	4	50	4	LENG8	19	54963275	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	586089	54963275	4165708	427	122527											
C19orf18	147685	broad.mit.edu	37	chr19	58472678	58472678	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaagaaatgcaagccacCgctgagaaagaaagaaaaga	10	6	0	6			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58472678	T	T	58472678	1	4	140	0	1	0	0	0	0	0	0	0	1929	667	23	4		4	C19orf18	19	58472678	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	3509403	58472678	656305	428	122528											
UBOX5	22888	broad.mit.edu	37	chr20	3090608	3090608	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaagcaatgtgctatacCgtgaggtgatgaagaagagc	14	6	0	6	rs11907671	by1000genomes	TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3090608	A	A	3090608	1	1	140	0	1	0	0	0	0	0	0	0	17020	667	23	1		1	UBOX5	20	3090608	3'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08		3090608	59934912	429	122529											
ATRN	8455	broad.mit.edu	37	chr20	3529977	3529977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccactcagattataacatGgttctagcgtaagtcgtttt	7	8	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3529977	T	T	3529977	3	4	140	1	0	0	0	0	1	0	0	0	1210	1348	47	2	1126	2	ATRN	20	3529977	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	439369	3529977	59495543	430	122530											
PLCB1	23236	broad.mit.edu	37	chr20	8755104	8755104	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaacagagaactttctcTaggaggaattctggtgaata	9	7	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8755104	C	C	8755104	1	2	140	0	1	0	0	0	0	0	0	0	12122	1537	53	5		5	PLCB1	20	8755104	Intron	SNP	T	TCGA-49-4507-01A-01D-1265-08	5225127	8755104	54270416	431	122531											
C20orf94	128710	broad.mit.edu	37	chr20	10536848	10536849	+	Intron	DNP	AG	TT	TT													ttgctgggcatgagccgcacAgacactgactctgccattaa							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	10536849	TT	TT	10536848	1	4	140	0	1	0	0	0	0	0	0	0	2143	203	7	5		5	C20orf94	20	10536848	Intron	DNP	AG	TCGA-49-4507-01A-01D-1265-08	1781744	10536848	52488672	432	122532											
ZNF133	7692	broad.mit.edu	37	chr20	18296557	18296557	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacttggaggagaagaccatCgtgtgcagtgactgtggcct	14	9	0	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18296557	T	T	18296557	2	4	140	1	0	0	0	0	0	0	0	1	17849	874	31	4		4	ZNF133	20	18296557	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	7759709	18296557	44728963	433	122533											
CD93	22918	broad.mit.edu	37	chr20	23066668	23066668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggttgcccccgttctgGttgcagtggttctgggcctc	14	13	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23066668	T	T	23066668	3	4	140	1	0	0	0	0	1	0	0	0	3077	1252	44	3	1804	3	CD93	20	23066668	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	4770111	23066668	39958852	434	122534											
NINL	22981	broad.mit.edu	37	chr20	25470571	25470571	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggccagcctctccgaatcCgaaagcttttccaccacttc	7	16	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25470571	T	T	25470571	2	4	140	1	0	0	0	0	0	0	0	1	10515	639	23	4		4	NINL	20	25470571	Silent	SNP	C	TCGA-49-4507-01A-01D-1265-08	2403903	25470571	37554949	435	122535											
TM9SF4	9777	broad.mit.edu	37	chr20	30732862	30732862	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcagtggcactggccaccAcaggaacagactgagtctgt	14	11	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30732862	T	T	30732862	1	4	140	0	1	0	0	0	0	0	0	0	16103	174	6	5		5	TM9SF4	20	30732862	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	5262291	30732862	32292658	436	122536											
DNMT3B	1789	broad.mit.edu	37	chr20	31384940	31384940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaccagcaagccggcagGgcctgcccttctctggtctc	10	18	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31384940	T	T	31384940	1	4	140	0	1	0	0	0	0	0	0	0	4717	1247	43	2		2	DNMT3B	20	31384940	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	652078	31384940	31640580	437	122537											
DLGAP4	22839	broad.mit.edu	37	chr20	35071389	35071389	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttcacctctatgtgcttCagtttcctccttttgaaaat	5	11	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35071389	T	T	35071389	1	4	140	0	1	0	0	0	0	0	0	0	4602	841	29	4		4	DLGAP4	20	35071389	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	3686449	35071389	27954131	438	122538											
C20orf117	140710	broad.mit.edu	37	chr20	35433300	35433300	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagtgtcttgatgtactcAttgggctgcagacaggaggc	14	9	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35433300	G	G	35433300	2	3	140	1	0	0	0	0	0	0	0	1	2105	214	8	5		5	C20orf117	20	35433300	Silent	SNP	A	TCGA-49-4507-01A-01D-1265-08	361911	35433300	27592220	439	122539											
RALGAPB	57148	broad.mit.edu	37	chr20	37194169	37194169	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttaggatctatttttatattCctgggttgtgtgatattact	8	4	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37194169	A	A	37194169	1	1	140	0	1	0	0	0	0	0	0	0	13123	870	30	3		3	RALGAPB	20	37194169	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1760869	37194169	25831351	440	122540											
SLC13A3	64849	broad.mit.edu	37	chr20	45241993	45241993	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataaatggtgggaaccgatGagtttcttggcctggacgag	14	6	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45241993	C	C	45241993	1	2	140	0	1	0	0	0	0	0	0	0	14506	1305	45	4		4	SLC13A3	20	45241993	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	8047824	45241993	17783527	441	122541											
CSE1L	1434	broad.mit.edu	37	chr20	47682795	47682795	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagccaacatagtgcacTtgatgcttagcagcccagag	9	10	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47682795	C	C	47682795	2	2	140	1	0	0	0	0	0	0	0	1	3964	1606	56	5		5	CSE1L	20	47682795	Silent	SNP	T	TCGA-49-4507-01A-01D-1265-08	2440802	47682795	15342725	442	122542											
DDX27	55661	broad.mit.edu	37	chr20	47853035	47853035	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcccctgtgaaggccaggAtacttccccaaggtgagcag	13	12	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47853035	G	G	47853035	3	3	140	1	0	0	0	0	1	0	0	0	4387	333	12	5	1822	5	DDX27	20	47853035	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	170240	47853035	15172485	443	122543											
SALL4	57167	broad.mit.edu	37	chr20	50407847	50407847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaaggagctatcagtcCcaaaaaccttgctacagtac	7	12	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50407847	A	A	50407847	3	1	140	1	0	0	0	0	1	0	0	0	13924	623	22	2	1998	2	SALL4	20	50407847	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	2554812	50407847	12617673	444	122544											
SALL4	57167	broad.mit.edu	37	chr20	50408823	50408823	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacgtgcgtctcctcccgacGaagccgctttactgtggctt	11	14	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50408823	A	A	50408823	3	1	140	1	0	0	0	0	1	0	0	0	13924	1058	37	4	2974	4	SALL4	20	50408823	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	976	50408823	12616697	445	122545											
CDH26	60437	broad.mit.edu	37	chr20	58545294	58545294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgccctctaagtaagcacGcccctttggccaggaagatt	9	13	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58545294	T	T	58545294	1	4	140	0	1	0	0	0	0	0	0	0	3140	1102	38	3		3	CDH26	20	58545294	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	8136471	58545294	4480226	446	122546											
KRTAP19-3	337970	broad.mit.edu	37	chr21	31864110	31864110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcctccgaagccagagcCatatccatagcctccaaagc	8	15	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31864110	A	A	31864110	3	1	140	1	0	0	0	0	1	0	0	0	8601	594	21	2	83	2	KRTAP19-3	21	31864110	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08		31864110	16265785	447	122547											
GAB4	128954	broad.mit.edu	37	chr22	17472980	17472980	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgcgcaggggcttcttGgagccatcattcttgtagta	13	8	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17472980	T	T	17472980	2	4	140	1	0	0	0	0	0	0	0	1	6211	1335	47	2		2	GAB4	22	17472980	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08		17472980	33831586	448	122548											
SEPT5	5413	broad.mit.edu	37	chr22	19707502	19707502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctttcaggtccagctccCactgttctgttctcgcggtg	9	15	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19707502	A	A	19707502	1	1	140	0	1	0	0	0	0	0	0	0	14180	609	21	2		2	SEPT5	22	19707502	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2234522	19707502	31597064	449	122549											
RTDR1	27156	broad.mit.edu	37	chr22	23401887	23401887	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcttgtgcctccagggccGcatacttccctgcaggccac	11	16	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23401887	A	A	23401887	3	1	140	1	0	0	0	0	1	0	0	0	13830	1087	38	4	250	4	RTDR1	22	23401887	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	3694385	23401887	27902679	450	122550											
BCR	613	broad.mit.edu	37	chr22	23616074	23616074	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctcagcagaccttgccttCtgggattggtgagattggcc	12	11	2	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23616074	T	T	23616074	1	4	140	0	1	0	0	0	0	0	0	0	1393	928	32	4		4	BCR	22	23616074	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	214187	23616074	27688492	451	122551											
UPB1	51733	broad.mit.edu	37	chr22	24906633	24906633	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagactgtattcttttgcAgtgacttcccgctgctgggc	11	11	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24906633	T	T	24906633	1	4	140	0	1	0	0	0	0	0	0	0	17128	203	7	5		5	UPB1	22	24906633	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	1290559	24906633	26397933	452	122552											
PLA2G3	50487	broad.mit.edu	37	chr22	31536292	31536292	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggggagccccccagggCcacccccaggaagcccagca	14	18	0	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31536292	G	G	31536292	3	3	140	1	0	0	0	0	1	0	0	0	12095	739	26	4	1508	4	PLA2G3	22	31536292	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	6629659	31536292	19768274	453	122553											
MYH9	4627	broad.mit.edu	37	chr22	36723529	36723529	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaagatggattgatcttcTcggtctgaaacaaagaagac	9	8	3	5			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36723529	A	A	36723529	2	1	140	1	0	0	0	0	0	0	0	1	10136	1538	54	5		5	MYH9	22	36723529	Silent	SNP	T	TCGA-49-4507-01A-01D-1265-08	5187237	36723529	14581037	454	122554											
FAM9B	171483	broad.mit.edu	37	chrX	9000150	9000150	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaattttcataaactaCagataactcctaaaacatac	1	9	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9000150	G	G	9000150	1	3	140	0	1	0	0	0	0	0	0	0	5717	493	17	4		4	FAM9B	23	9000150	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08		9000150	146270410	455	122555											
GLRA2	2742	broad.mit.edu	37	chrX	14622528	14622528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggagagttgtaagtcaCcactgttgaaatgactccct	10	9	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14622528	A	A	14622528	1	1	140	0	1	0	0	0	0	0	0	0	6519	522	18	3		3	GLRA2	23	14622528	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	5622378	14622528	140648032	456	122556											
GLRA2	2742	broad.mit.edu	37	chrX	14748448	14748448	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaacccactcccacaaccGccaaaagatggagatgctat	7	15	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14748448	A	A	14748448	2	1	140	1	0	0	0	0	0	0	0	1	6519	1074	38	4		4	GLRA2	23	14748448	Silent	SNP	G	TCGA-49-4507-01A-01D-1265-08	125920	14748448	140522112	457	122557											
GRPR	2925	broad.mit.edu	37	chrX	16142311	16142311	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacgttccaaacctgttcAtttccagtctggctttggga	9	10	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16142311	G	G	16142311	3	3	140	1	0	0	0	0	1	0	0	0	6874	217	8	5	237	5	GRPR	23	16142311	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	1393863	16142311	139128249	458	122558											
DCAF8L1	139425	broad.mit.edu	37	chrX	27998579	27998579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtctggctccagagccaaCtcgtgggcaggtcccctgtg	14	13	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27998579	A	A	27998579	3	1	140	1	0	0	0	0	1	0	0	0	4310	564	20	3	933	3	DCAF8L1	23	27998579	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	11856268	27998579	127271981	459	122559											
DMD	1756	broad.mit.edu	37	chrX	31241241	31241241	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacattattcaggtcagctGaaaagagggaaaacaaagag	11	5	2	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31241241	T	T	31241241	1	4	140	0	1	0	0	0	0	0	0	0	4620	1305	45	3		3	DMD	23	31241241	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	3242662	31241241	124029319	460	122560											
SSX3	10214	broad.mit.edu	37	chrX	48213500	48213500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtgacccgtttattacGcatgaaagatgggaggatgg	14	6	1	3			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48213500	T	T	48213500	3	4	140	1	0	0	0	0	1	0	0	0	15323	1087	38	3	419	3	SSX3	23	48213500	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	16972259	48213500	107057060	461	122561											
CACNA1F	778	broad.mit.edu	37	chrX	49071487	49071487	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttcccaatggttcccaagGgattatgtggagataatagg	12	6	0	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49071487	A	A	49071487	1	1	140	0	1	0	0	0	0	0	0	0	2569	1247	43	4		4	CACNA1F	23	49071487	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	857987	49071487	106199073	462	122562											
GNL3L	54552	broad.mit.edu	37	chrX	54558956	54558956	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctcccattctgacaggaaGagagcaagcagatttgaacc	9	10	2	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54558956	A	A	54558956	1	1	140	0	1	0	0	0	0	0	0	0	6602	957	33	4		4	GNL3L	23	54558956	5'UTR	SNP	G	TCGA-49-4507-01A-01D-1265-08	5487469	54558956	100711604	463	122563											
ITIH5L	347365	broad.mit.edu	37	chrX	54777845	54777845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtgggcctggagcggGggcttttgcatggtcattta	18	6	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54777845	T	T	54777845	1	4	140	0	1	0	0	0	0	0	0	0	7978	1247	43	2		2	ITIH5L	23	54777845	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	218889	54777845	100492715	464	122564											
IGBP1	3476	broad.mit.edu	37	chrX	69366622	69366622	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatatcagcttagaagagAttgagagcattgaccaggaa	11	5	1	5			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69366622	T	T	69366622	3	4	140	1	0	0	0	0	1	0	0	0	7637	333	12	5	632	5	IGBP1	23	69366622	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	14588777	69366622	85903938	465	122565											
KIF4A	24137	broad.mit.edu	37	chrX	69519117	69519118	+	Intron	DNP	CC	TT	TT													tataatactaaagttcacatCccttttatctgccactgtgg							TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	69519118	TT	TT	69519117	1	4	140	0	1	0	0	0	0	0	0	0	8373	870	30	4		4	KIF4A	23	69519117	Intron	DNP	CC	TCGA-49-4507-01A-01D-1265-08	152495	69519117	85751443	466	122566											
DLG3	1741	broad.mit.edu	37	chrX	69720818	69720818	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagccatgaaactggagcagGaatttggagagtactttaca	11	6	0	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69720818	A	A	69720818	3	1	140	1	0	0	0	0	1	0	0	0	4596	1175	41	4	2684	4	DLG3	23	69720818	Missense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	201701	69720818	85549742	467	122567											
CXorf65	158830	broad.mit.edu	37	chrX	70326279	70326279	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaaactgctgattatctGagaagagataggatgggaca	12	6	1	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70326279	A	A	70326279	1	1	140	0	1	0	0	0	0	0	0	0	4150	1305	45	4		4	CXorf65	23	70326279	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	605461	70326279	84944281	468	122568											
MED12	9968	broad.mit.edu	37	chrX	70349021	70349021	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctgccgcatcctccttcAccttttcaagacaccgcagc	5	18	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70349021	G	G	70349021	3	3	140	1	0	0	0	0	1	0	0	0	9521	159	6	5	3631	5	MED12	23	70349021	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	22742	70349021	84921539	469	122569											
MED12	9968	broad.mit.edu	37	chrX	70356611	70356611	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaggaaggggtgccattaGaatcataataaaaattaacc	8	5	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70356611	C	C	70356611	1	2	140	0	1	0	0	0	0	0	0	0	9521	957	33	4		4	MED12	23	70356611	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	7590	70356611	84913949	470	122570											
GJB1	2705	broad.mit.edu	37	chrX	70443955	70443955	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctcagggacactgtggtGgacctatgtcatcagcgtgg	13	10	3	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70443955	A	A	70443955	4	1	140	1	0	0	0	0	0	1	0	0	6471	1357	47	4	400	4	GJB1	23	70443955	Nonsense_Mutation	SNP	G	TCGA-49-4507-01A-01D-1265-08	87344	70443955	84826605	471	122571											
OGT	8473	broad.mit.edu	37	chrX	70764405	70764405	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tataattaatgacagcgtctCtgggtttctaggatttgtac	9	6	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70764405	A	A	70764405	1	1	140	0	1	0	0	0	0	0	0	0	10942	928	32	3		3	OGT	23	70764405	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	320450	70764405	84506155	472	122572											
ERCC6L	54821	broad.mit.edu	37	chrX	71424797	71424797	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatgttcccaaagaatcCaattatgggaacaaaaattc	5	9	1	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71424797	A	A	71424797	1	1	140	0	1	0	0	0	0	0	0	0	5260	609	21	2		2	ERCC6L	23	71424797	3'UTR	SNP	C	TCGA-49-4507-01A-01D-1265-08	660392	71424797	83845763	473	122573											
ABCB7	22	broad.mit.edu	37	chrX	74295224	74295224	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactgacaagcatcacttcAaacatgatgggaagaagatt	8	9	2	4			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74295224	G	G	74295224	2	3	140	1	0	0	0	0	0	0	0	1	46	127	5	5		5	ABCB7	23	74295224	Silent	SNP	A	TCGA-49-4507-01A-01D-1265-08	2870427	74295224	80975336	474	122574											
UPRT	139596	broad.mit.edu	37	chrX	74494131	74494131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggactccatgccctgtcaCaaccagcaagtaaactctgc	7	16	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74494131	A	A	74494131	3	1	140	1	0	0	0	0	1	0	0	0	17140	477	17	3	44	3	UPRT	23	74494131	Missense_Mutation	SNP	C	TCGA-49-4507-01A-01D-1265-08	198907	74494131	80776429	475	122575											
COX7B	1349	broad.mit.edu	37	chrX	77155192	77155192	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacatctcggccttctaatCttgaatgctgtctgtctccc	7	13	5	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77155192	G	G	77155192	1	3	140	0	1	0	0	0	0	0	0	0	3814	928	32	4		4	COX7B	23	77155192	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	2661061	77155192	78115368	476	122576											
RPA4	29935	broad.mit.edu	37	chrX	96139803	96139803	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggaaacggtcaatgcacAcatgatgctggataaagccc	10	10	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96139803	T	T	96139803	3	4	140	1	0	0	0	0	1	0	0	0	13650	159	6	5	496	5	RPA4	23	96139803	Missense_Mutation	SNP	A	TCGA-49-4507-01A-01D-1265-08	18984611	96139803	59130757	477	122577											
MORC4	79710	broad.mit.edu	37	chrX	106204996	106204996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaacccactcaggtcccCttccaagctgtggaagcttt	9	14	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106204996	A	A	106204996	1	1	140	0	1	0	0	0	0	0	0	0	9798	696	24	2		2	MORC4	23	106204996	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	10065193	106204996	49065564	478	122578											
MCTS1	28985	broad.mit.edu	37	chrX	119739399	119739399	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcctaagaaagatcctgTcaaaatagtccgatggtaag	9	8	1	2			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119739399	C	C	119739399	3	2	140	1	0	0	0	0	1	0	0	0	9495	1667	58	5	173	5	MCTS1	23	119739399	Missense_Mutation	SNP	T	TCGA-49-4507-01A-01D-1265-08	13534403	119739399	35531161	479	122579											
SAGE1	55511	broad.mit.edu	37	chrX	134986617	134986617	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttacctcacagctcaacCacttcatttggtttccagat	4	14	3	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134986617	T	T	134986617	1	4	140	0	1	0	0	0	0	0	0	0	13920	609	21	4		4	SAGE1	23	134986617	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	15247218	134986617	20283943	480	122580											
ZNF185	7739	broad.mit.edu	37	chrX	152087507	152087507	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagcctatgacaggaaaGcgcctctcccctctcttagg	10	14	2	1			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152087507	A	A	152087507	1	1	140	0	1	0	0	0	0	0	0	0	17878	986	34	4		4	ZNF185	23	152087507	Intron	SNP	G	TCGA-49-4507-01A-01D-1265-08	17100890	152087507	3183053	481	122581											
ATP6AP1	537	broad.mit.edu	37	chrX	153663860	153663860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggacttccaggtatggagCgggcgtggcccagcttcagg	16	11	1	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153663860	T	T	153663860	1	4	140	0	1	0	0	0	0	0	0	0	1169	783	27	4		4	ATP6AP1	23	153663860	Intron	SNP	C	TCGA-49-4507-01A-01D-1265-08	1576353	153663860	1606700	482	122582											
VBP1	7411	broad.mit.edu	37	chrX	154456586	154456586	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaatgtcctaggttcaActgtgcaatctctcctttat	5	9	2	0			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154456586	T	T	154456586	1	4	140	0	1	0	0	0	0	0	0	0	17263	58	2	5		5	VBP1	23	154456586	Intron	SNP	A	TCGA-49-4507-01A-01D-1265-08	792726	154456586	813974	483	122583											
EXOSC10	5394	broad.mit.edu	37	chr1	11151076	11151076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgcactatttaccttgaGggagaggtttctgagcattg	12	6	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11151076	T	T	11151076	3	4	141	1	0	0	0	0	1	0	0	0	5356	1000	35	2	2103	2	EXOSC10	1	11151076	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08		11151076	238099545	1	122584											
EXOSC10	5394	broad.mit.edu	37	chr1	11159766	11159766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctggtacccccgaggccCcgcgaactcaccttcacaaa	7	19	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11159766	A	A	11159766	1	1	141	0	1	0	0	0	0	0	0	0	5356	638	22	2		2	EXOSC10	1	11159766	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	8690	11159766	238090855	2	122585											
NPPA	4878	broad.mit.edu	37	chr1	11907523	11907523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggaaaatacagggaaaGggataaacctcactgacttg	10	6	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11907523	T	T	11907523	1	4	141	0	1	0	0	0	0	0	0	0	10686	1015	35	2		2	NPPA	1	11907523	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	747757	11907523	237343098	3	122586											
DHRS3	9249	broad.mit.edu	37	chr1	12640591	12640591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtctggtacacctcctccCggttgcccacatcacagatg	8	17	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12640591	A	A	12640591	3	1	141	1	0	0	0	0	1	0	0	0	4531	652	23	1	629	1	DHRS3	1	12640591	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	733068	12640591	236610030	4	122587											
TAS1R2	80834	broad.mit.edu	37	chr1	19166849	19166849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgggtgtctggaagtgcctCcagaatatcaccaggatggc	13	9	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19166849	A	A	19166849	3	1	141	1	0	0	0	0	1	0	0	0	15682	856	30	3	759	3	TAS1R2	1	19166849	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	6526258	19166849	230083772	5	122588											
RAP1GAP	5909	broad.mit.edu	37	chr1	21940093	21940093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatctgcggagccagcccGggaagctcagcggagcggag	16	14	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21940093	T	T	21940093	1	4	141	0	1	0	0	0	0	0	0	0	13145	1131	39	1		1	RAP1GAP	1	21940093	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	2773244	21940093	227310528	6	122589											
LDLRAD2	401944	broad.mit.edu	37	chr1	22142393	22142393	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcctgctgtgtcgtgggCtggaccggaatcctcacctc	11	14	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22142393	T	T	22142393	1	4	141	0	1	0	0	0	0	0	0	0	8778	812	28	4		4	LDLRAD2	1	22142393	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	202300	22142393	227108228	7	122590											
LUZP1	7798	broad.mit.edu	37	chr1	23417947	23417947	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttacctattcgagttggGgggtcttctaaagatttcaa	9	6	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23417947	T	T	23417947	2	4	141	1	0	0	0	0	0	0	0	1	9173	1219	43	2		2	LUZP1	1	23417947	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	1275554	23417947	225832674	8	122591											
HMGCL	3155	broad.mit.edu	37	chr1	24147139	24147139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagattgccacaattcccaGggagaccaatatgaaagaat	9	8	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24147139	T	T	24147139	1	4	141	0	1	0	0	0	0	0	0	0	7296	1015	35	2		2	HMGCL	1	24147139	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	729192	24147139	225103482	9	122592											
STX12	23673	broad.mit.edu	37	chr1	28148860	28148860	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcctccgatcgttctccCgctgagctgttttcaagggc	10	13	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28148860	A	A	28148860	1	1	141	0	1	0	0	0	0	0	0	0	15456	667	23	1		1	STX12	1	28148860	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	4001721	28148860	221101761	10	122593											
SERINC2	347735	broad.mit.edu	37	chr1	31896500	31896500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggtgcgcgcttgggcGgtgaaggggagagggaagag	23	4	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31896500	T	T	31896500	1	4	141	0	1	0	0	0	0	0	0	0	14193	1131	39	1		1	SERINC2	1	31896500	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3747640	31896500	217354121	11	122594											
WDR65	149465	broad.mit.edu	37	chr1	43638417	43638417	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagcagaactgtttggcGggagatcatgtcagccgtgg	14	9	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43638417	T	T	43638417	1	4	141	0	1	0	0	0	0	0	0	0	17443	1131	39	1		1	WDR65	1	43638417	5'UTR	SNP	G	TCGA-49-4510-01A-01D-1265-08	11741917	43638417	205612204	12	122595											
WDR65	149465	broad.mit.edu	37	chr1	43650921	43650921	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgccccaggtgtttgccaTtgcagcctattcaaagggat	10	11	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43650921	C	C	43650921	3	2	141	1	0	0	0	0	1	0	0	0	17443	1493	52	5	877	5	WDR65	1	43650921	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	12504	43650921	205599700	13	122596											
KLF17	128209	broad.mit.edu	37	chr1	44588045	44588045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaggttctctgttcttcGgggtcattttcacagcttta	9	9	4	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44588045	T	T	44588045	1	4	141	0	1	0	0	0	0	0	0	0	8416	1131	39	1		1	KLF17	1	44588045	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	937124	44588045	204662576	14	122597											
AKR1A1	10327	broad.mit.edu	37	chr1	46034632	46034632	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaaagtgatctgcatcccCaaaagtatcactccttctcg	7	13	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46034632	A	A	46034632	2	1	141	1	0	0	0	0	0	0	0	1	465	581	21	2		2	AKR1A1	1	46034632	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	1446587	46034632	203215989	15	122598											
SLC5A9	200010	broad.mit.edu	37	chr1	48696370	48696370	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgactgccgtctacacCattgcaggtaggcagaggga	15	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48696370	A	A	48696370	2	1	141	1	0	0	0	0	0	0	0	1	14786	581	21	2		2	SLC5A9	1	48696370	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	2661738	48696370	200554251	16	122599											
ZCCHC11	23318	broad.mit.edu	37	chr1	52961078	52961078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactagttaagaaccacacaGgaaagattctaattacttac	5	8	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52961078	T	T	52961078	1	4	141	0	1	0	0	0	0	0	0	0	17706	1015	35	2		2	ZCCHC11	1	52961078	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	4264708	52961078	196289543	17	122600											
INADL	10207	broad.mit.edu	37	chr1	62613951	62613951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctttttttcactttttcCccaggttgtagcagatacca	5	11	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62613951	A	A	62613951	1	1	141	0	1	0	0	0	0	0	0	0	7801	638	22	2		2	INADL	1	62613951	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	9652873	62613951	186636670	18	122601											
SGIP1	84251	broad.mit.edu	37	chr1	67155796	67155796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgtcatatctggggctGggagacattaaaaatatgga	12	4	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67155796	T	T	67155796	1	4	141	0	1	0	0	0	0	0	0	0	14319	1363	47	2		2	SGIP1	1	67155796	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	4541845	67155796	182094825	19	122602											
LPHN2	23266	broad.mit.edu	37	chr1	82452646	82452646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacggcactaacaacccCtataacacattgctcgctga	5	17	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82452646	A	A	82452646	1	1	141	0	1	0	0	0	0	0	0	0	9003	696	24	2		2	LPHN2	1	82452646	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	15296850	82452646	166797975	20	122603											
CNN3	1266	broad.mit.edu	37	chr1	95363337	95363337	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctatattggtaatctctGgggtagtcatcctggtactc	10	9	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95363337	T	T	95363337	2	4	141	1	0	0	0	0	0	0	0	1	3643	1335	47	2		2	CNN3	1	95363337	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	12910691	95363337	153887284	21	122604											
CELSR2	1952	broad.mit.edu	37	chr1	109793108	109793108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactgcccgaggagcaccCgtgcttaaaggctccacggc	11	16	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109793108	A	A	109793108	3	1	141	1	0	0	0	0	1	0	0	0	3252	652	23	1	409	1	CELSR2	1	109793108	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	14429771	109793108	139457513	22	122605											
SYCP1	6847	broad.mit.edu	37	chr1	115489050	115489050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagttttcataatgtcaGcagtgactggtggtaaagaa	12	6	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115489050	T	T	115489050	1	4	141	0	1	0	0	0	0	0	0	0	15550	986	34	3		3	SYCP1	1	115489050	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	5695942	115489050	133761571	23	122606											
CD160	11126	broad.mit.edu	37	chr1	145699074	145699074	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtttcaatcccgtcacTgtgtagttccctgtctctgg	8	12	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145699074	A	A	145699074	2	1	141	1	0	0	0	0	0	0	0	1	2996	1567	55	5		5	CD160	1	145699074	Silent	SNP	T	TCGA-49-4510-01A-01D-1265-08	30210024	145699074	103551547	24	122607											
PDZK1	5174	broad.mit.edu	37	chr1	145747065	145747065	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctccaccttcaaccccCgagaatgtaaactgtccaag	6	15	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145747065	A	A	145747065	2	1	141	1	0	0	0	0	0	0	0	1	11801	644	23	1		1	PDZK1	1	145747065	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	47991	145747065	103503556	25	122608											
LOC200030	200030	broad.mit.edu	37	chr1	148344544	148344544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaatttctgcccttcccCtggcccagcttcgttcttat	7	15	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148344544	A	A	148344544	1	1	141	0	1	0	0	0	0	0	0	0	8950	696	24	2		2	LOC200030	1	148344544	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	2597479	148344544	100906077	26	122609											
OTUD7B	56957	broad.mit.edu	37	chr1	149936222	149936222	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaactcccttctccatcagTgcatacaaagctttccgcag	5	15	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149936222	C	C	149936222	2	2	141	1	0	0	0	0	0	0	0	1	11413	1683	59	5		5	OTUD7B	1	149936222	Silent	SNP	T	TCGA-49-4510-01A-01D-1265-08	1591678	149936222	99314399	27	122610											
C1orf43	25912	broad.mit.edu	37	chr1	154186503	154186503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctcatgcctgtaatccCaacactttgggaggctgagg	13	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154186503	A	A	154186503	1	1	141	0	1	0	0	0	0	0	0	0	2062	609	21	2		2	C1orf43	1	154186503	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	4250281	154186503	95064118	28	122611											
ADAR	103	broad.mit.edu	37	chr1	154558777	154558777	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggtacggagtctctcccCgagccgaatgccatcccacg	10	16	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154558777	A	A	154558777	3	1	141	1	0	0	0	0	1	0	0	0	281	652	23	1	614	1	ADAR	1	154558777	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	372274	154558777	94691844	29	122612											
IQGAP3	128239	broad.mit.edu	37	chr1	156509595	156509595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcagaccctcaggagacGggagagacttctccttggaa	12	11	3	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156509595	T	T	156509595	1	4	141	0	1	0	0	0	0	0	0	0	7886	1131	39	1		1	IQGAP3	1	156509595	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1950818	156509595	92741026	30	122613											
KIRREL	55243	broad.mit.edu	37	chr1	158057529	158057529	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagaccctgactccctGtgctctactttgcagaccct	7	14	1	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158057529	A	A	158057529	1	1	141	0	1	0	0	0	0	0	0	0	8395	1392	48	4		4	KIRREL	1	158057529	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1547934	158057529	91193092	31	122614											
COPA	1314	broad.mit.edu	37	chr1	160309907	160309907	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatccatgtcaaacaaggcTtaaaataccccaggatatta	6	9	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160309907	G	G	160309907	1	3	141	0	1	0	0	0	0	0	0	0	3759	1624	56	5		5	COPA	1	160309907	Intron	SNP	T	TCGA-49-4510-01A-01D-1265-08	2252378	160309907	88940714	32	122615											
SLAMF6	114836	broad.mit.edu	37	chr1	160460449	160460449	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccataaacagaatcatttTggtatctgtatattgaattt	5	5	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160460449	G	G	160460449	3	3	141	1	0	0	0	0	1	0	0	0	14481	1821	63	5	345	5	SLAMF6	1	160460449	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	150542	160460449	88790172	33	122616											
ITLN1	55600	broad.mit.edu	37	chr1	160850573	160850573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatctcctgggatgctgcCattcatagaggagaaacaat	10	9	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160850573	A	A	160850573	1	1	141	0	1	0	0	0	0	0	0	0	7980	609	21	2		2	ITLN1	1	160850573	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	390124	160850573	88400048	34	122617											
ITLN2	142683	broad.mit.edu	37	chr1	160919820	160919820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatttatgactggacttaGggagcaaacactcacgttga	9	7	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160919820	T	T	160919820	1	4	141	0	1	0	0	0	0	0	0	0	7981	1015	35	2		2	ITLN2	1	160919820	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	69247	160919820	88330801	35	122618											
NDUFS2	4720	broad.mit.edu	37	chr1	161180395	161180395	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagtggagtgatgcttcGgggctcaggcatccagtggg	16	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161180395	T	T	161180395	3	4	141	1	0	0	0	0	1	0	0	0	10387	1116	39	1	915	1	NDUFS2	1	161180395	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	260575	161180395	88070226	36	122619											
LRRC52	440699	broad.mit.edu	37	chr1	165533124	165533124	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttctctcttgccctcccCatcccaccaccttggagctg	6	19	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165533124	A	A	165533124	1	1	141	0	1	0	0	0	0	0	0	0	9097	609	21	2		2	LRRC52	1	165533124	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	4352729	165533124	83717497	37	122620											
FMO4	2329	broad.mit.edu	37	chr1	171303668	171303668	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgtctttgaagatgggAcagtggaagaaaacattgat	12	5	1	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171303668	T	T	171303668	3	4	141	1	0	0	0	0	1	0	0	0	6015	275	10	5	968	5	FMO4	1	171303668	Missense_Mutation	SNP	A	TCGA-49-4510-01A-01D-1265-08	5770544	171303668	77946953	38	122621											
TNN	63923	broad.mit.edu	37	chr1	175105999	175105999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaccggcactccagcgcGgtatgaggtgagagtggatt	14	11	0	2	rs147711632	byFrequency	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175105999	T	T	175105999	3	4	141	1	0	0	0	0	1	0	0	0	16446	1116	39	1	3532	1	TNN	1	175105999	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	3802331	175105999	74144622	39	122622											
RASAL2	9462	broad.mit.edu	37	chr1	178110797	178110797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcatttgagatttcctcGggaggagtgccttcgatgtc	13	8	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178110797	T	T	178110797	1	4	141	0	1	0	0	0	0	0	0	0	13172	1131	39	1		1	RASAL2	1	178110797	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3004798	178110797	71139824	40	122623											
GLUL	2752	broad.mit.edu	37	chr1	182353654	182353654	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggcgacgatcttcaaaGtaacccttcttctcctggcc	10	13	4	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182353654	A	A	182353654	2	1	141	1	0	0	0	0	0	0	0	1	6542	1024	36	4		4	GLUL	1	182353654	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	4242857	182353654	66896967	41	122624											
HMCN1	83872	broad.mit.edu	37	chr1	186120955	186120955	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagaaaaatacgtgttccCacatagaataatttgaaact	5	6	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186120955	A	A	186120955	1	1	141	0	1	0	0	0	0	0	0	0	7287	609	21	2		2	HMCN1	1	186120955	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	3767301	186120955	63129666	42	122625											
PTPRC	5788	broad.mit.edu	37	chr1	198648988	198648988	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttaggaccaaggtgtagaGtttccttgactcaagatcat	10	7	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198648988	C	C	198648988	1	2	141	0	1	0	0	0	0	0	0	0	12905	1044	36	4		4	PTPRC	1	198648988	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	12528033	198648988	50601633	43	122626											
KIF21B	23046	broad.mit.edu	37	chr1	200946273	200946273	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accctggggtgggtccccctGaaccaagacctggggacctt	13	14	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200946273	T	T	200946273	1	4	141	0	1	0	0	0	0	0	0	0	8359	1305	45	3		3	KIF21B	1	200946273	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	2297285	200946273	48304348	44	122627											
RCOR3	55758	broad.mit.edu	37	chr1	211452513	211452513	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cactccagcctgggcaataaGagtgaaacgctgtcttaaaa	9	10	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211452513	T	T	211452513	1	4	141	0	1	0	0	0	0	0	0	0	13292	957	33	3		3	RCOR3	1	211452513	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	10506240	211452513	37798108	45	122628											
DTL	51514	broad.mit.edu	37	chr1	212273851	212273851	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgattagaaactgggtgaccCgaacaccttcctcatcacca	7	14	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212273851	A	A	212273851	2	1	141	1	0	0	0	0	0	0	0	1	4827	644	23	1		1	DTL	1	212273851	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	821338	212273851	36976770	46	122629											
FBXO28	23219	broad.mit.edu	37	chr1	224344891	224344891	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatttatagttaaaataaGgtgttaaattatgatgatta	6	2	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224344891	T	T	224344891	1	4	141	0	1	0	0	0	0	0	0	0	5795	1015	35	2		2	FBXO28	1	224344891	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	12071040	224344891	24905730	47	122630											
NVL	4931	broad.mit.edu	37	chr1	224499625	224499625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctaaaaaaatgactaccCaaaacaagtaaatatattca	2	8	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224499625	A	A	224499625	1	1	141	0	1	0	0	0	0	0	0	0	10875	609	21	2		2	NVL	1	224499625	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	154734	224499625	24750996	48	122631											
CDC42BPA	8476	broad.mit.edu	37	chr1	227182576	227182576	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccttggtccatgcctccaGaggacaaagagccctctgac	9	14	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227182576	T	T	227182576	3	4	141	1	0	0	0	0	1	0	0	0	3102	942	33	3	191	3	CDC42BPA	1	227182576	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	2682951	227182576	22068045	49	122632											
URB2	9816	broad.mit.edu	37	chr1	229773336	229773336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttattgagatggatgatccCgcttggctggaattcctcca	10	10	0	2	rs80169786	byFrequency;by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229773336	A	A	229773336	2	1	141	1	0	0	0	0	0	0	0	1	17151	639	23	1		1	URB2	1	229773336	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	2590760	229773336	19477285	50	122633											
GNG4	2786	broad.mit.edu	37	chr1	235715289	235715289	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaacataagacaagcccCggccactgttggctgggcag	13	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235715289	A	A	235715289	1	1	141	0	1	0	0	0	0	0	0	0	6593	667	23	1		1	GNG4	1	235715289	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	5941953	235715289	13535332	51	122634											
ERO1LB	56605	broad.mit.edu	37	chr1	236383992	236383992	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacttgtcagcattaaggcCtctctaagttagtacagata	8	8	2	2	rs45566335		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236383992	T	T	236383992	1	4	141	0	1	0	0	0	0	0	0	0	5282	696	24	4		4	ERO1LB	1	236383992	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	668703	236383992	12866629	52	122635											
KMO	8564	broad.mit.edu	37	chr1	241755404	241755404	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaatacaacatgtttcccCgcaaaggccgtggactccct	9	14	0	0	rs150853900		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241755404	A	A	241755404	2	1	141	1	0	0	0	0	0	0	0	1	8495	639	23	1		1	KMO	1	241755404	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	5371412	241755404	7495217	53	122636											
SNTG2	54221	broad.mit.edu	37	chr2	1161275	1161275	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgatgaagttaccatcacCgttgagtatctcagggaagc	12	9	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1161275	A	A	1161275	2	1	141	1	0	0	0	0	0	0	0	1	14989	639	23	1		1	SNTG2	2	1161275	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08		1161275	242038098	54	122637											
MYT1L	23040	broad.mit.edu	37	chr2	1983031	1983031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaatggattacacggtgcCgcaggcaggcaggtgagacg	16	8	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1983031	A	A	1983031	1	1	141	0	1	0	0	0	0	0	0	0	10201	667	23	1		1	MYT1L	2	1983031	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	821756	1983031	241216342	55	122638											
KIDINS220	57498	broad.mit.edu	37	chr2	8926550	8926550	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaacaaataacttcaatgtAtgtcatctttgcatcactta	4	8	4	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8926550	G	G	8926550	1	3	141	0	1	0	0	0	0	0	0	0	8341	464	16	5		5	KIDINS220	2	8926550	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	6943519	8926550	234272823	56	122639											
APOB	338	broad.mit.edu	37	chr2	21229220	21229220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatagttcctgaatattccCgagaaagaaccgaacccttg	7	11	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21229220	A	A	21229220	3	1	141	1	0	0	0	0	1	0	0	0	787	652	23	1	3187	1	APOB	2	21229220	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	12302670	21229220	221970153	57	122640											
ITSN2	50618	broad.mit.edu	37	chr2	24426670	24426670	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatctggtgaataaacacagGagagtcagaagtctttcttc	9	7	4	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24426670	A	A	24426670	1	1	141	0	1	0	0	0	0	0	0	0	7997	1189	41	4		4	ITSN2	2	24426670	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3197450	24426670	218772703	58	122641											
EMILIN1	11117	broad.mit.edu	37	chr2	27306226	27306226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaactaggccgccttcGggatggtgtggagcgctgct	17	9	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27306226	T	T	27306226	3	4	141	1	0	0	0	0	1	0	0	0	5135	1116	39	1	1801	1	EMILIN1	2	27306226	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	2879556	27306226	215893147	59	122642											
FOSL2	2355	broad.mit.edu	37	chr2	28631663	28631663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagcgtcgcatccggcGggagaggaacaagctggctg	18	9	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28631663	T	T	28631663	3	4	141	1	0	0	0	0	1	0	0	0	6046	1116	39	1	402	1	FOSL2	2	28631663	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1325437	28631663	214567710	60	122643											
CRIM1	51232	broad.mit.edu	37	chr2	36669818	36669818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagaccgcgtgtccccCggacagctatgaaactcaag	10	14	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36669818	A	A	36669818	3	1	141	1	0	0	0	0	1	0	0	0	3905	652	23	1	823	1	CRIM1	2	36669818	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	8038155	36669818	206529555	61	122644											
ABCG5	64240	broad.mit.edu	37	chr2	44040370	44040370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatctagatgttgcacctGggcaggttttctcaatgaat	10	7	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44040370	T	T	44040370	3	4	141	1	0	0	0	0	1	0	0	0	71	1348	47	2	118	2	ABCG5	2	44040370	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	7370552	44040370	199159003	62	122645											
SIX2	10736	broad.mit.edu	37	chr2	45233169	45233169	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacatagacagctatctgccCtacccggctgttctacccgc	7	16	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45233169	G	G	45233169	1	3	141	0	1	0	0	0	0	0	0	0	14460	696	24	4		4	SIX2	2	45233169	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	1192799	45233169	197966204	63	122646											
PSME4	23198	broad.mit.edu	37	chr2	54147519	54147533	+	Intron	DEL	GAGAAATTAAAAACA	-	-													cagcatctactcagcaagttGagaaattaaaaacaacaaca							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54147533	-	-	54147519	6	5	141	0	1	1	0	1	0	0	0	0	12815	1305	45	0		0	PSME4	2	54147519	Intron	DEL	GAGAAATTAAAAACA	TCGA-49-4510-01A-01D-1265-08	8914350	54147519	189051854	64	122647											
VRK2	7444	broad.mit.edu	37	chr2	58315682	58315682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattagagaatgaaggattaTtgccctagagacatcagtta	9	5	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58315682	C	C	58315682	1	2	141	0	1	0	0	0	0	0	0	0	17347	1508	52	5		5	VRK2	2	58315682	Intron	SNP	T	TCGA-49-4510-01A-01D-1265-08	4168163	58315682	184883691	65	122648											
CCT4	10575	broad.mit.edu	37	chr2	62107648	62107648	+	Intron	DEL	T	-	-													agatgcaacatgattcctgaTttcttctgatttgttgtcta							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62107648	-	-	62107648	6	5	141	0	1	1	0	1	0	0	0	0	2985	1508	52	0		0	CCT4	2	62107648	Intron	DEL	T	TCGA-49-4510-01A-01D-1265-08	3791966	62107648	181091725	66	122649											
UGP2	7360	broad.mit.edu	37	chr2	64083742	64083742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggcttttaacatttgccCtttgtaaatccattatcttt	4	10	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64083742	A	A	64083742	1	1	141	0	1	0	0	0	0	0	0	0	17069	696	24	2		2	UGP2	2	64083742	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1976094	64083742	179115631	67	122650											
DYSF	8291	broad.mit.edu	37	chr2	71778254	71778254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagagttcacaggcttcCcagacccctacacagagctc	8	16	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71778254	A	A	71778254	3	1	141	1	0	0	0	0	1	0	0	0	4899	623	22	2	1868	2	DYSF	2	71778254	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	7694512	71778254	171421119	68	122651											
ALMS1	7840	broad.mit.edu	37	chr2	73830395	73830395	+	Missense_Mutation	SNP	C	T	T													ggctatccagaagaacaagcCtatcagcaagaaggaaatga							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73830395	T	T	73830395	3	4	141	1	0	0	0	0	1	0	0	0	535	681	24	4	12405	4	ALMS1	2	73830395	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2052141	73830395	169368978	69	122652	532	2									
ALMS1	7840	broad.mit.edu	37	chr2	73830399	73830399	+	Missense_Mutation	SNP	C	G	G													atccagaagaacaagcctatCagcaagaaggaaatgattca							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73830399	G	G	73830399	3	3	141	1	0	0	0	0	1	0	0	0	535	816	29	4	12409	4	ALMS1	2	73830399	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	4	73830399	169368974	70	122653	532	2									
ALMS1	7840	broad.mit.edu	37	chr2	73830528	73830528	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaataaatgtattatactCaagtttaaacattatgagaa	5	4	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73830528	T	T	73830528	1	4	141	0	1	0	0	0	0	0	0	0	535	841	29	4		4	ALMS1	2	73830528	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	129	73830528	169368845	71	122654											
MRPL19	9801	broad.mit.edu	37	chr2	75874223	75874223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctccgtcgtccgctccCgcaggggtccacgcggggcc	14	18	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75874223	A	A	75874223	1	1	141	0	1	0	0	0	0	0	0	0	9878	667	23	1		1	MRPL19	2	75874223	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	2043695	75874223	167325150	72	122655											
REG1B	5968	broad.mit.edu	37	chr2	79314711	79314711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatcagggaggagatcaGcatgaagaacgagttggtct	14	6	3	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79314711	T	T	79314711	3	4	141	1	0	0	0	0	1	0	0	0	13319	962	34	3	492	3	REG1B	2	79314711	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	3440488	79314711	163884662	73	122656											
GGCX	2677	broad.mit.edu	37	chr2	85785728	85785728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcatcatgcccagtgccCctgggatttgtagggagagg	14	11	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85785728	A	A	85785728	3	1	141	1	0	0	0	0	1	0	0	0	6420	637	22	2	1950	2	GGCX	2	85785728	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	6471017	85785728	157413645	74	122657											
SFTPB	6439	broad.mit.edu	37	chr2	85892326	85892326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagctgggtcctgacgggGgtgtgagttgggagagaggt	21	6	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85892326	T	T	85892326	1	4	141	0	1	0	0	0	0	0	0	0	14304	1247	43	2		2	SFTPB	2	85892326	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	106598	85892326	157307047	75	122658											
RMND5A	64795	broad.mit.edu	37	chr2	87404356	87404356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcacagcactgacaacCggtgagtctagtgattctgt	10	11	3	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87404356	A	A	87404356	1	1	141	0	1	0	0	0	0	0	0	0	13508	667	23	1		1	RMND5A	2	87404356	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1512030	87404356	155795017	76	122659											
ZNF2	7549	broad.mit.edu	37	chr2	95843292	95843292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggagtcgtctggtccCcatacagagggacctctaca	12	11	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95843292	A	A	95843292	3	1	141	1	0	0	0	0	1	0	0	0	17886	623	22	2	104	2	ZNF2	2	95843292	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	8438936	95843292	147356081	77	122660											
MGAT4A	11320	broad.mit.edu	37	chr2	99279514	99279514	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattaaataattacctctcCtatgaagactactataacac	2	10	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99279514	A	A	99279514	4	1	141	1	0	0	0	0	0	1	0	0	9638	690	24	2	1202	2	MGAT4A	2	99279514	Nonsense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	3436222	99279514	143919859	78	122661											
RANBP2	5903	broad.mit.edu	37	chr2	109381162	109381162	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagagctcgttggcccaccAttagctgaaactgtttttac	8	10	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109381162	T	T	109381162	2	4	141	1	0	0	0	0	0	0	0	1	13136	204	8	5		5	RANBP2	2	109381162	Silent	SNP	A	TCGA-49-4510-01A-01D-1265-08	10101648	109381162	133818211	79	122662											
CKAP2L	150468	broad.mit.edu	37	chr2	113504153	113504153	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcattagaaggtacaccCtgaaataaaccaaaatatcc	4	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113504153	A	A	113504153	5	1	141	1	0	0	0	0	0	0	1	0	3474	695	24	2	651	2	CKAP2L	2	113504153	Splice_Site	SNP	C	TCGA-49-4510-01A-01D-1265-08	4122991	113504153	129695220	80	122663											
CCDC74B	91409	broad.mit.edu	37	chr2	130900728	130900728	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaggtcccccagaacctgtCcccactgggttggcatacag	10	16	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130900728	A	A	130900728	1	1	141	0	1	0	0	0	0	0	0	0	2876	870	30	3		3	CCDC74B	2	130900728	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	17396575	130900728	112298645	81	122664											
IMP4	92856	broad.mit.edu	37	chr2	131100479	131100479	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagcccacagattctccCggacccacgtggaagcggca	13	14	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131100479	A	A	131100479	1	1	141	0	1	0	0	0	0	0	0	0	7790	667	23	1		1	IMP4	2	131100479	5'Flank	SNP	C	TCGA-49-4510-01A-01D-1265-08	199751	131100479	112098894	82	122665											
NR4A2	4929	broad.mit.edu	37	chr2	157182142	157182142	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaggagggttacagaaatGgggggcagcttgagctgaga	18	5	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157182142	T	T	157182142	1	4	141	0	1	0	0	0	0	0	0	0	10728	1363	47	2		2	NR4A2	2	157182142	3'UTR	SNP	G	TCGA-49-4510-01A-01D-1265-08	26081663	157182142	86017231	83	122666											
ACVR1C	130399	broad.mit.edu	37	chr2	158406802	158406802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcacagccacatcttccCcacaccatcttccatgccac	2	19	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158406802	A	A	158406802	3	1	141	1	0	0	0	0	1	0	0	0	222	623	22	2	858	2	ACVR1C	2	158406802	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	1224660	158406802	84792571	84	122667											
BAZ2B	29994	broad.mit.edu	37	chr2	160295733	160295733	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccttggtttctggataacGacaaggtagttggcaagact	11	7	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160295733	A	A	160295733	1	1	141	0	1	0	0	0	0	0	0	0	1337	1073	37	4		4	BAZ2B	2	160295733	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1888931	160295733	82903640	85	122668											
MARCH7	64844	broad.mit.edu	37	chr2	160604631	160604631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgacaatgaaggtaggcGgacaacgaggagattgctgt	14	6	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160604631	T	T	160604631	3	4	141	1	0	0	0	0	1	0	0	0	9398	1116	39	1	844	1	MARCH7	2	160604631	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	308898	160604631	82594742	86	122669											
ITGB6	3694	broad.mit.edu	37	chr2	161053001	161053001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctttataagataccagCaattgaaagtttttctgcac	5	7	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161053001	A	A	161053001	1	1	141	0	1	0	0	0	0	0	0	0	7969	725	25	3		3	ITGB6	2	161053001	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	448370	161053001	82146372	87	122670											
SCN7A	6332	broad.mit.edu	37	chr2	167304318	167304318	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgccacttattctccCggagccttttctttttatta	4	10	2	0	rs74728251	byFrequency;by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167304318	A	A	167304318	1	1	141	0	1	0	0	0	0	0	0	0	14036	667	23	1		1	SCN7A	2	167304318	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	6251317	167304318	75895055	88	122671											
OSBPL6	114880	broad.mit.edu	37	chr2	179247751	179247751	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgactctccttcttccagTcctgaatggggagcttacag	10	11	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179247751	C	C	179247751	3	2	141	1	0	0	0	0	1	0	0	0	11375	1681	58	5	1802	5	OSBPL6	2	179247751	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	11943433	179247751	63951622	89	122672											
TTN	7273	broad.mit.edu	37	chr2	179478707	179478707	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgttatatgtcctgtatAtaaatatgacaccaaaatgc	5	6	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179478707	C	C	179478707	1	2	141	0	1	0	0	0	0	0	0	0	16861	464	16	5		5	TTN	2	179478707	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	230956	179478707	63720666	90	122673											
TTN	7273	broad.mit.edu	37	chr2	179615912	179615912	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagagaacagaatatcttTatcactagcttcacttctca	4	10	5	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179615912	C	C	179615912	3	2	141	1	0	0	0	0	1	0	0	0	16861	1763	61	5	99082	5	TTN	2	179615912	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	137205	179615912	63583461	91	122674											
ASNSD1	54529	broad.mit.edu	37	chr2	190532355	190532355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcttctcctgagaattcCtgagacctatttttgaccct	6	11	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190532355	A	A	190532355	1	1	141	0	1	0	0	0	0	0	0	0	1053	696	24	2		2	ASNSD1	2	190532355	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	10916443	190532355	52667018	92	122675											
RQCD1	9125	broad.mit.edu	37	chr2	219457146	219457146	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagttctttcatctatccCctttacaactacttctcatc	3	13	4	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219457146	A	A	219457146	1	1	141	0	1	0	0	0	0	0	0	0	13781	638	22	2		2	RQCD1	2	219457146	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	28924791	219457146	23742227	93	122676											
SLC23A3	151295	broad.mit.edu	37	chr2	220028047	220028047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtggggccaggagtccGggcagcctgaagcctcaact	16	12	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220028047	T	T	220028047	1	4	141	0	1	0	0	0	0	0	0	0	14578	1131	39	1		1	SLC23A3	2	220028047	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	570901	220028047	23171326	94	122677											
FAM134A	79137	broad.mit.edu	37	chr2	220045342	220045342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttcttacccagccgagcGgggcgcatatctcagcgtga	12	12	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220045342	T	T	220045342	1	4	141	0	1	0	0	0	0	0	0	0	5491	1131	39	1		1	FAM134A	2	220045342	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	17295	220045342	23154031	95	122678											
DNPEP	23549	broad.mit.edu	37	chr2	220239499	220239499	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccagtcactttgtgatggcGatgttgtcccagcaaccaat	10	11	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220239499	A	A	220239499	1	1	141	0	1	0	0	0	0	0	0	0	4719	1073	37	4		4	DNPEP	2	220239499	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	194157	220239499	22959874	96	122679											
SCG2	7857	broad.mit.edu	37	chr2	224463246	224463246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctattttctcctctactGggttccagtcttctcccccg	5	16	5	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224463246	T	T	224463246	3	4	141	1	0	0	0	0	1	0	0	0	14003	1348	47	2	1102	2	SCG2	2	224463246	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	4223747	224463246	18736127	97	122680											
COL4A4	1286	broad.mit.edu	37	chr2	227895288	227895288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagaaggtcaacactccCagggaggcctggaggcccag	13	13	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227895288	A	A	227895288	3	1	141	1	0	0	0	0	1	0	0	0	3725	594	21	2	1260	2	COL4A4	2	227895288	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	3432042	227895288	15304085	98	122681											
MTMR14	64419	broad.mit.edu	37	chr3	9695404	9695404	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatctgtggccactatcccCggcacatcgtgttcctggag	10	13	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9695404	A	A	9695404	2	1	141	1	0	0	0	0	0	0	0	1	10036	643	23	1		1	MTMR14	3	9695404	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08		9695404	188327026	99	122682											
FBLN2	2199	broad.mit.edu	37	chr3	13659681	13659681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgagtgccttctcctccCgggagagctgtgccagcacc	13	14	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13659681	A	A	13659681	3	1	141	1	0	0	0	0	1	0	0	0	5756	652	23	1	543	1	FBLN2	3	13659681	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	3964277	13659681	184362749	100	122683											
RFTN1	23180	broad.mit.edu	37	chr3	16450898	16450898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccttcttaatgaactctGggatgagtttctggtctgtc	9	9	5	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16450898	T	T	16450898	3	4	141	1	0	0	0	0	1	0	0	0	13366	1348	47	2	1339	2	RFTN1	3	16450898	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	2791217	16450898	181571532	101	122684											
DLEC1	9940	broad.mit.edu	37	chr3	38105499	38105499	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaattttcttttttttttcTttttttttttttttttagta	2	2	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38105499	C	C	38105499	1	2	141	0	1	0	0	0	0	0	0	0	4592	1624	56	5		5	DLEC1	3	38105499	Intron	SNP	T	TCGA-49-4510-01A-01D-1265-08	21654601	38105499	159916931	102	122685											
SLC25A38	54977	broad.mit.edu	37	chr3	39432849	39432849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgcatgcgaatcatcttGgggtcttttgggaaaaccca	10	9	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39432849	T	T	39432849	1	4	141	0	1	0	0	0	0	0	0	0	14616	1363	47	2		2	SLC25A38	3	39432849	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1327350	39432849	158589581	103	122686											
CCK	885	broad.mit.edu	37	chr3	42304857	42304857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagaagagggtcagcatcGggagcctgggaacaagggca	17	7	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42304857	T	T	42304857	1	4	141	0	1	0	0	0	0	0	0	0	2907	1131	39	1		1	CCK	3	42304857	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	2872008	42304857	155717573	104	122687											
CSPG5	10675	broad.mit.edu	37	chr3	47604045	47604045	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagataatgtttcttcccCtaccccccacccactacccc	4	19	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47604045	A	A	47604045	1	1	141	0	1	0	0	0	0	0	0	0	3995	696	24	2		2	CSPG5	3	47604045	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	5299188	47604045	150418385	105	122688											
COL7A1	1294	broad.mit.edu	37	chr3	48608081	48608081	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctactcaccactgacccCggtggtccaggtggccccag	10	18	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48608081	A	A	48608081	2	1	141	1	0	0	0	0	0	0	0	1	3736	639	23	1		1	COL7A1	3	48608081	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	1004036	48608081	149414349	106	122689											
CELSR3	1951	broad.mit.edu	37	chr3	48665944	48665944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagcagtttcttcttctGggagatgaggaagtcgacat	12	7	3	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48665944	T	T	48665944	3	4	141	1	0	0	0	0	1	0	0	0	3253	1357	47	2		2	CELSR3	3	48665944	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	57863	48665944	149356486	107	122690											
APEH	327	broad.mit.edu	37	chr3	49714867	49714867	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatctggtccaggtcaccAgaaaagagatacatcaggct	11	10	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49714867	G	G	49714867	1	3	141	0	1	0	0	0	0	0	0	0	770	203	7	5		5	APEH	3	49714867	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	1048923	49714867	148307563	108	122691											
BAP1	8314	broad.mit.edu	37	chr3	52441235	52441235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatccagctcaaagagccGgcctgtgataggcacatagc	10	14	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52441235	A	A	52441235	3	1	141	1	0	0	0	0	1	0	0	0	1316	1115	39	4	1698	4	BAP1	3	52441235	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	2726368	52441235	145581195	109	122692											
NISCH	11188	broad.mit.edu	37	chr3	52522457	52522457	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaccgctttgtcactgcCatcttcgtgctgccccacga	10	15	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52522457	A	A	52522457	2	1	141	1	0	0	0	0	0	0	0	1	10527	581	21	2		2	NISCH	3	52522457	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	81222	52522457	145499973	110	122693											
STAB1	23166	broad.mit.edu	37	chr3	52553416	52553416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgatgatgctcccatccCgagggtatgacaagcacggg	13	12	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52553416	A	A	52553416	3	1	141	1	0	0	0	0	1	0	0	0	15355	652	23	1	5365	1	STAB1	3	52553416	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	30959	52553416	145469014	111	122694											
CACNA2D3	55799	broad.mit.edu	37	chr3	54961853	54961853	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacgacttgaaaatagattTcccgcagatacctttgtgag	9	8	0	5			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54961853	A	A	54961853	1	1	141	0	1	0	0	0	0	0	0	0	2576	1798	62	5		5	CACNA2D3	3	54961853	Intron	SNP	T	TCGA-49-4510-01A-01D-1265-08	2408437	54961853	143060577	112	122695											
PXK	54899	broad.mit.edu	37	chr3	58380880	58380880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaagttcctttagaacCtgttattgatacttagtctc	5	9	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58380880	A	A	58380880	1	1	141	0	1	0	0	0	0	0	0	0	12957	696	24	2		2	PXK	3	58380880	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	3419027	58380880	139641550	113	122696											
MAGI1	9223	broad.mit.edu	37	chr3	65369180	65369180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccttagaaaaatatgctGggaagagagacaagcaaaag	11	5	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65369180	T	T	65369180	1	4	141	0	1	0	0	0	0	0	0	0	9282	1363	47	2		2	MAGI1	3	65369180	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	6988300	65369180	132653250	114	122697											
FOXP1	27086	broad.mit.edu	37	chr3	71026710	71026710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgcttgcatactaaacGgtttttaaatctacttcatc	5	9	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71026710	T	T	71026710	1	4	141	0	1	0	0	0	0	0	0	0	6086	1131	39	1		1	FOXP1	3	71026710	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	5657530	71026710	126995720	115	122698											
ARL13B	200894	broad.mit.edu	37	chr3	93768298	93768298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgaaaaggaaccaccGggtagaaccacttaatatag	9	7	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93768298	T	T	93768298	3	4	141	1	0	0	0	0	1	0	0	0	931	1116	39	1	1103	1	ARL13B	3	93768298	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	22741588	93768298	104254132	116	122699											
OR5H14	403273	broad.mit.edu	37	chr3	97868072	97868073	+	5'Flank	INS	-	TAAA	TAAA													ttttcatttctttaacccctINStataggatttcttatttata							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TAAA	97868073	TAAA	TAAA	97868072	6	5	141	0	1	1	1	0	0	0	0	0	11254	1624	56	0		0	OR5H14	3	97868072	5'Flank	INS	-	TCGA-49-4510-01A-01D-1265-08	4099774	97868072	100154358	117	122700											
SENP7	57337	broad.mit.edu	37	chr3	101050843	101050843	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacctattgttttgttgTcattttgggactgctgagcc	10	8	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101050843	C	C	101050843	3	2	141	1	0	0	0	0	1	0	0	0	14164	1667	58	5	492	5	SENP7	3	101050843	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	3182771	101050843	96971587	118	122701											
SIDT1	54847	broad.mit.edu	37	chr3	113286456	113286456	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaagcaaccaatgagacGggacccttgcagcaactgat	10	11	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113286456	T	T	113286456	2	4	141	1	0	0	0	0	0	0	0	1	14415	1103	39	1		1	SIDT1	3	113286456	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	12235613	113286456	84735974	119	122702											
CASR	846	broad.mit.edu	37	chr3	122002536	122002536	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgggacattttacagatGccagtgcctgtaacaagtgc	10	10	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122002536	A	A	122002536	3	1	141	1	0	0	0	0	1	0	0	0	2708	1319	46	4	1787	4	CASR	3	122002536	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	8716080	122002536	76019894	120	122703											
SLC12A8	84561	broad.mit.edu	37	chr3	124906167	124906167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtagacgccaccgctgcCgatgctgctgcgctccccga	13	16	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124906167	A	A	124906167	3	1	141	1	0	0	0	0	1	0	0	0	14502	652	23	1	1884	1	SLC12A8	3	124906167	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2903631	124906167	73116263	121	122704											
ZBTB38	253461	broad.mit.edu	37	chr3	141164094	141164094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccataaatgtaaataccCagcagaactggattgcgccg	10	10	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141164094	A	A	141164094	3	1	141	1	0	0	0	0	1	0	0	0	17665	594	21	2	2866	2	ZBTB38	3	141164094	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	16257927	141164094	56858336	122	122705											
CPB1	1360	broad.mit.edu	37	chr3	148562468	148562468	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtagtccactttcagagccGattttggagaaagactcgct	10	9	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148562468	A	A	148562468	3	1	141	1	0	0	0	0	1	0	0	0	3828	1058	37	4	722	4	CPB1	3	148562468	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	7398374	148562468	49459962	123	122706											
HLTF	6596	broad.mit.edu	37	chr3	148763814	148763814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatgtcattcagtgaatGggaaacaaagtaaacaaaaa	7	4	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148763814	T	T	148763814	1	4	141	0	1	0	0	0	0	0	0	0	7282	1363	47	2		2	HLTF	3	148763814	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	201346	148763814	49258616	124	122707											
IGSF10	285313	broad.mit.edu	37	chr3	151165556	151165556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatgcctcctattctccCtaaaacgtcgatgtgttgaa	8	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151165556	A	A	151165556	3	1	141	1	0	0	0	0	1	0	0	0	7667	681	24	2	5718	2	IGSF10	3	151165556	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2401742	151165556	46856874	125	122708											
RARRES1	5918	broad.mit.edu	37	chr3	158428549	158428549	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgctgactatttccaaGgggtttttcagttgcttcat	10	7	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158428549	T	T	158428549	2	4	141	1	0	0	0	0	0	0	0	1	13163	987	35	2		2	RARRES1	3	158428549	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	7262993	158428549	39593881	126	122709											
MECOM	2122	broad.mit.edu	37	chr3	168807848	168807848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttcatagtcatcctcaGggtttccttcatgtaaatta	5	9	5	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168807848	T	T	168807848	3	4	141	1	0	0	0	0	1	0	0	0	9515	1000	35	2	390	2	MECOM	3	168807848	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	10379299	168807848	29214582	127	122710											
SAMD7	344658	broad.mit.edu	37	chr3	169644746	169644746	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccagacattgaagcaccCagcaaccagaagtcaagtga	9	12	1	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169644746	A	A	169644746	2	1	141	1	0	0	0	0	0	0	0	1	13935	581	21	2		2	SAMD7	3	169644746	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	836898	169644746	28377684	128	122711											
SLC7A14	57709	broad.mit.edu	37	chr3	170198379	170198379	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcacgcagatggtcacCgtgtgccccgtcgctgctgt	14	13	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170198379	A	A	170198379	2	1	141	1	0	0	0	0	0	0	0	1	14810	639	23	1		1	SLC7A14	3	170198379	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	553633	170198379	27824051	129	122712											
PARL	55486	broad.mit.edu	37	chr3	183551537	183551537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgtgaacgtgaacatcGgaaggaaaataatggcaagc	12	7	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183551537	T	T	183551537	3	4	141	1	0	0	0	0	1	0	0	0	11545	1116	39	1	246	1	PARL	3	183551537	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	13353158	183551537	14470893	130	122713											
RTP4	64108	broad.mit.edu	37	chr3	187086387	187086387	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagagagcatttggctggtGagtgtgggtttcccaggcaa	15	7	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187086387	C	C	187086387	1	2	141	0	1	0	0	0	0	0	0	0	13847	1305	45	4		4	RTP4	3	187086387	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3534850	187086387	10936043	131	122714											
LMLN	89782	broad.mit.edu	37	chr3	197723037	197723037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttctgattttttttctGgttcttaggaggaagcacga	10	5	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197723037	T	T	197723037	1	4	141	0	1	0	0	0	0	0	0	0	8921	1363	47	2		2	LMLN	3	197723037	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	10636650	197723037	299393	132	122715											
TBC1D14	57533	broad.mit.edu	37	chr4	7032157	7032157	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcactcggcaccaatcagagCcccatgccgcggcccctctg	10	19	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7032157	G	G	7032157	1	3	141	0	1	0	0	0	0	0	0	0	15722	754	26	4		4	TBC1D14	4	7032157	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08		7032157	184122119	133	122716											
PI4K2B	55300	broad.mit.edu	37	chr4	25256696	25256696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgctctagaaaattattGgtgtgtttaaacccaaatca	6	6	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25256696	T	T	25256696	3	4	141	1	0	0	0	0	1	0	0	0	11967	1348	47	2	443	2	PI4K2B	4	25256696	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	18224539	25256696	165897580	134	122717											
PDS5A	23244	broad.mit.edu	37	chr4	39871031	39871031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctttgctagtacttcagGggaaacctcttcatctggag	9	10	4	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39871031	T	T	39871031	3	4	141	1	0	0	0	0	1	0	0	0	11785	1232	43	2	1573	2	PDS5A	4	39871031	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	14614335	39871031	151283245	135	122718											
PDS5A	23244	broad.mit.edu	37	chr4	39974893	39974894	+	Intron	INS	-	GAG	GAG													gaacatttgcttttgctcttINSgaggggcagatgccaacatg							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAG	39974894	GAG	GAG	39974893	6	5	141	0	1	1	1	0	0	0	0	0	11785	1827	63	0		0	PDS5A	4	39974893	Intron	INS	-	TCGA-49-4510-01A-01D-1265-08	103862	39974893	151179383	136	122719											
SLC4A4	8671	broad.mit.edu	37	chr4	72400023	72400023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccttgctgctgctatccCggctttgttggtcactatac	10	12	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72400023	A	A	72400023	3	1	141	1	0	0	0	0	1	0	0	0	14770	652	23	1	2547	1	SLC4A4	4	72400023	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	32425130	72400023	118754253	137	122720											
ADAMTS3	9508	broad.mit.edu	37	chr4	73434535	73434535	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatgcccagagcaaaccCaccccccccgcccaaaataa	5	19	0	1	rs140084299	by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73434535	A	A	73434535	1	1	141	0	1	0	0	0	0	0	0	0	267	609	21	2		2	ADAMTS3	4	73434535	5'Flank	SNP	C	TCGA-49-4510-01A-01D-1265-08	1034512	73434535	117719741	138	122721											
RASSF6	166824	broad.mit.edu	37	chr4	74442312	74442312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcaaaaaacagattcaGggtgatggtattcatacatc	10	6	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74442312	T	T	74442312	1	4	141	0	1	0	0	0	0	0	0	0	13198	1015	35	2		2	RASSF6	4	74442312	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1007777	74442312	116711964	139	122722											
EREG	2069	broad.mit.edu	37	chr4	75250500	75250500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgagagagttacctcagGggatccagagttgccgcaag	13	8	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75250500	T	T	75250500	3	4	141	1	0	0	0	0	1	0	0	0	5262	1232	43	2	503	2	EREG	4	75250500	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	808188	75250500	115903776	140	122723											
FRAS1	80144	broad.mit.edu	37	chr4	79203987	79203987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtaggagggagagaagtGggaagatggcccttgcaagg	19	5	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79203987	T	T	79203987	3	4	141	1	0	0	0	0	1	0	0	0	6102	1357	47	2	1167	2	FRAS1	4	79203987	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	3953487	79203987	111950289	141	122724											
HERC3	8916	broad.mit.edu	37	chr4	89570953	89570953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagcagtattcctgtttctGggttgtacattttcctcctc	8	10	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89570953	T	T	89570953	1	4	141	0	1	0	0	0	0	0	0	0	7126	1363	47	2		2	HERC3	4	89570953	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	10366966	89570953	101583323	142	122725											
EIF4E	1977	broad.mit.edu	37	chr4	99802265	99802265	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accaatcactatctttggagGaagtcctaacctttccttgt	6	11	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99802265	A	A	99802265	3	1	141	1	0	0	0	0	1	0	0	0	5070	1174	41	4	89	4	EIF4E	4	99802265	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	10231312	99802265	91352011	143	122726											
COL25A1	84570	broad.mit.edu	37	chr4	109862533	109862533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcactaccttaatcaggcGgcgtttaatgagctgctgat	10	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109862533	T	T	109862533	3	4	141	1	0	0	0	0	1	0	0	0	3716	1116	39	1	1615	1	COL25A1	4	109862533	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	10060268	109862533	81291743	144	122727											
LARP7	51574	broad.mit.edu	37	chr4	113568633	113568633	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcagaatccctagctcccCgatcaaaagtaaagaaaatt	6	10	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113568633	A	A	113568633	2	1	141	1	0	0	0	0	0	0	0	1	8705	644	23	1		1	LARP7	4	113568633	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	3706100	113568633	77585643	145	122728											
LARP1B	55132	broad.mit.edu	37	chr4	129043234	129043234	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgaacaggcacccacatgtCtcgggcaaaaatcacatctg	8	13	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129043234	G	G	129043234	3	3	141	1	0	0	0	0	1	0	0	0	8701	913	32	4	1538	4	LARP1B	4	129043234	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	15474601	129043234	62111042	146	122729											
MAB21L2	10586	broad.mit.edu	37	chr4	151504477	151504477	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgctgcccggctgcgcagTgctcaaactgagcgatgggc	14	14	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151504477	C	C	151504477	3	2	141	1	0	0	0	0	1	0	0	0	9230	1696	59	5	298	5	MAB21L2	4	151504477	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	22461243	151504477	39649799	147	122730											
PLRG1	5356	broad.mit.edu	37	chr4	155457782	155457782	+	3'UTR	DEL	T	-	-													tatcctcatgaacgccaagcTtttttttttttaattaaaaa					rs71970519		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155457782	-	-	155457782	6	5	141	0	1	1	0	1	0	0	0	0	12201	1624	56	0		0	PLRG1	4	155457782	3'UTR	DEL	T	TCGA-49-4510-01A-01D-1265-08	3953305	155457782	35696494	148	122731											
MAP9	79884	broad.mit.edu	37	chr4	156283322	156283322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaaaaaaatacatttgcCacataagtttaataattaac	3	6	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156283322	A	A	156283322	1	1	141	0	1	0	0	0	0	0	0	0	9362	609	21	2		2	MAP9	4	156283322	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	825540	156283322	34870954	149	122732											
SPOCK3	50859	broad.mit.edu	37	chr4	167656221	167656221	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgccactagcaaaatctcCggagatctcaaaatctatag	6	11	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167656221	A	A	167656221	4	1	141	1	0	0	0	0	0	1	0	0	15199	661	23	1	152	1	SPOCK3	4	167656221	Nonsense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	11372899	167656221	23498055	150	122733											
SLC6A3	6531	broad.mit.edu	37	chr5	1441518	1441518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaccagcggccccttccCtgttgaactggccgagggcc	12	16	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1441518	A	A	1441518	3	1	141	1	0	0	0	0	1	0	0	0	14799	681	24	2	1540	2	SLC6A3	5	1441518	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08		1441518	179473742	151	122734											
KIAA0947	23379	broad.mit.edu	37	chr5	5462224	5462224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgaaaagcatttcacCagaagtttctgcctctagga	9	9	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5462224	A	A	5462224	3	1	141	1	0	0	0	0	1	0	0	0	8272	594	21	2	2827	2	KIAA0947	5	5462224	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	4020706	5462224	175453036	152	122735											
FBXL7	23194	broad.mit.edu	37	chr5	15928027	15928027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcatgcgcacactgagCacgcccagcccagccctgat	10	17	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928027	A	A	15928027	3	1	141	1	0	0	0	0	1	0	0	0	5781	709	25	3	166	3	FBXL7	5	15928027	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	10465803	15928027	164987233	153	122736											
ADAMTS12	81792	broad.mit.edu	37	chr5	33616058	33616058	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactggataataaaccctcCattcaggtaatatttttcag	5	10	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33616058	A	A	33616058	4	1	141	1	0	0	0	0	0	1	0	0	257	603	21	2	2561	2	ADAMTS12	5	33616058	Nonsense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	17688031	33616058	147299202	154	122737											
RICTOR	253260	broad.mit.edu	37	chr5	38968087	38968087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcctcagtcacaacagGtagaggaagacgaaatatat	9	8	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38968087	T	T	38968087	3	4	141	1	0	0	0	0	1	0	0	0	13467	1261	44	3	4216	3	RICTOR	5	38968087	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	5352029	38968087	141947173	155	122738											
C7	730	broad.mit.edu	37	chr5	40972681	40972681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgagatgaagaatgccCgctgtgtacaaaaaggtgag	13	7	0	4	rs117487879	by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40972681	A	A	40972681	3	1	141	1	0	0	0	0	1	0	0	0	2400	652	23	1	2117	1	C7	5	40972681	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2004594	40972681	139942579	156	122739											
OXCT1	5019	broad.mit.edu	37	chr5	41805723	41805723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatgattcgttcccttaCgtcatctccaggtttagcag	8	11	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41805723	A	A	41805723	3	1	141	1	0	0	0	0	1	0	0	0	11423	536	19	3	697	3	OXCT1	5	41805723	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	833042	41805723	139109537	157	122740											
ADAMTS6	11174	broad.mit.edu	37	chr5	64629840	64629840	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattaaaaaaaaaaaaaaaAaaaaaaaaaaaaaccaaaaa	0	2	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64629840	C	C	64629840	1	2	141	0	1	0	0	0	0	0	0	0	270	29	1	5		5	ADAMTS6	5	64629840	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	22824117	64629840	116285420	158	122741											
TRIM23	373	broad.mit.edu	37	chr5	64890374	64890374	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttagcaaaaatcaggagcaGagcatctcggagttcttttt	10	7	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64890374	C	C	64890374	3	2	141	1	0	0	0	0	1	0	0	0	16621	933	33	4	280	4	TRIM23	5	64890374	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	260534	64890374	116024886	159	122742											
TAF9	6880	broad.mit.edu	37	chr5	68661652	68661652	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actttagtagcaactgtcagGaacttaaaaaaattttaaat	5	5	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68661652	A	A	68661652	1	1	141	0	1	0	0	0	0	0	0	0	15654	1189	41	4		4	TAF9	5	68661652	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3771278	68661652	112253608	160	122743											
CARTPT	9607	broad.mit.edu	37	chr5	71016433	71016433	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcaattccttcctcctgaaGtgcttatgaaggggcgtcca	10	11	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71016433	C	C	71016433	3	2	141	1	0	0	0	0	1	0	0	0	2685	1020	36	4	352	4	CARTPT	5	71016433	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	2354781	71016433	109898827	161	122744											
GFM2	84340	broad.mit.edu	37	chr5	74018089	74018089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaacgaaacttaacatgTattctctaaatcaaagcctt	4	8	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74018089	A	A	74018089	1	1	141	0	1	0	0	0	0	0	0	0	6406	1653	57	5		5	GFM2	5	74018089	Intron	SNP	T	TCGA-49-4510-01A-01D-1265-08	3001656	74018089	106897171	162	122745											
FAM169A	26049	broad.mit.edu	37	chr5	74137556	74137556	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatatgaaacgccatcttcCtttactcacagaaaataaat	4	9	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74137556	A	A	74137556	1	1	141	0	1	0	0	0	0	0	0	0	5532	696	24	2		2	FAM169A	5	74137556	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	119467	74137556	106777704	163	122746											
PPIP5K2	23262	broad.mit.edu	37	chr5	102483829	102483829	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagctatatctaacctttAttctggatctctttcttttt	3	8	4	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102483829	T	T	102483829	1	4	141	0	1	0	0	0	0	0	0	0	12434	464	16	5		5	PPIP5K2	5	102483829	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	28346273	102483829	78431431	164	122747											
CAMK4	814	broad.mit.edu	37	chr5	110814095	110814095	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagactttgtggatttgaaCcattctatgatgaaagaggc	10	6	1	5			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110814095	G	G	110814095	3	3	141	1	0	0	0	0	1	0	0	0	2631	507	18	4	752	4	CAMK4	5	110814095	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	8330266	110814095	70101165	165	122748											
DTWD2	285605	broad.mit.edu	37	chr5	118183901	118183901	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atactgactagaaatgctagTttttaattgcacctgaaatc	6	7	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118183901	C	C	118183901	3	2	141	1	0	0	0	0	1	0	0	0	4832	1725	60	5	294	5	DTWD2	5	118183901	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	7369806	118183901	62731359	166	122749											
CEP120	153241	broad.mit.edu	37	chr5	122713082	122713082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaacctgttgctgaaggcGgtgtttatcctcttcgagct	10	11	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122713082	T	T	122713082	3	4	141	1	0	0	0	0	1	0	0	0	3276	1116	39	1	636	1	CEP120	5	122713082	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	4529181	122713082	58202178	167	122750											
RAPGEF6	51735	broad.mit.edu	37	chr5	130782164	130782164	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagcgtcacataaatgaaaActtgtactcacaggtaccat	6	9	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130782164	G	G	130782164	1	3	141	0	1	0	0	0	0	0	0	0	13156	58	2	5		5	RAPGEF6	5	130782164	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	8069082	130782164	50133096	168	122751											
PCDHA3	56145	broad.mit.edu	37	chr5	140180996	140180996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtccaaaagacacGgggaccttctggaggtaaat	15	8	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140180996	T	T	140180996	3	4	141	1	0	0	0	0	1	0	0	0	11619	1116	39	1	216	1	PCDHA3	5	140180996	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	9398832	140180996	40734264	169	122752											
PCDHA6	56142	broad.mit.edu	37	chr5	140207997	140207997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgcagcatccacctggaGgtgatcgtggacaggccgct	15	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140207997	T	T	140207997	3	4	141	1	0	0	0	0	1	0	0	0	11622	991	35	2	323	2	PCDHA6	5	140207997	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	27001	140207997	40707263	170	122753											
PCDHB10	56126	broad.mit.edu	37	chr5	140571984	140571984	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgaacttaaaagagaagCtttagctgccaaagattggg	11	5	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140571984	A	A	140571984	1	1	141	0	1	0	0	0	0	0	0	0	11629	812	28	3		3	PCDHB10	5	140571984	5'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	363987	140571984	40343276	171	122754											
PCDHGA6	56109	broad.mit.edu	37	chr5	140753830	140753830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagccccaggagttggcGgagcacggagtccgcatcgt	16	12	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140753830	T	T	140753830	2	4	141	1	0	0	0	0	0	0	0	1	11652	1103	39	1		1	PCDHGA6	5	140753830	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	181846	140753830	40161430	172	122755											
NR3C1	2908	broad.mit.edu	37	chr5	142662064	142662064	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcgctgctggtatataatTatattcactaatcaaaacat	7	7	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142662064	C	C	142662064	1	2	141	0	1	0	0	0	0	0	0	0	10725	1769	61	5		5	NR3C1	5	142662064	Intron	SNP	T	TCGA-49-4510-01A-01D-1265-08	1908234	142662064	38253196	173	122756											
PPP2R2B	5521	broad.mit.edu	37	chr5	145979813	145979813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacttaaaagctcatgaaGggaatgttcaatatacctat	7	7	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145979813	T	T	145979813	1	4	141	0	1	0	0	0	0	0	0	0	12486	1015	35	2		2	PPP2R2B	5	145979813	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3317749	145979813	34935447	174	122757											
NDST1	3340	broad.mit.edu	37	chr5	149922368	149922368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagactctatcttttggctGggggctgggccctgggtctc	14	12	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149922368	T	T	149922368	1	4	141	0	1	0	0	0	0	0	0	0	10350	1363	47	2		2	NDST1	5	149922368	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3942555	149922368	30992892	175	122758											
FAM71B	153745	broad.mit.edu	37	chr5	156589544	156589544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagctcctggccaccctGggctttctccactttggcct	8	18	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156589544	T	T	156589544	3	4	141	1	0	0	0	0	1	0	0	0	5659	1357	47	2	89	2	FAM71B	5	156589544	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	6667176	156589544	24325716	176	122759											
GABRA6	2559	broad.mit.edu	37	chr5	161112996	161112996	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatttcagtgcactgcaggAtggcgtcgtctctgccctgg	13	12	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161112996	G	G	161112996	3	3	141	1	0	0	0	0	1	0	0	0	6225	333	12	5	3	5	GABRA6	5	161112996	Missense_Mutation	SNP	A	TCGA-49-4510-01A-01D-1265-08	4523452	161112996	19802264	177	122760											
SLIT3	6586	broad.mit.edu	37	chr5	168149356	168149356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaaggaggcatgtgccCtgttgtgtctttctattctc	11	8	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168149356	A	A	168149356	1	1	141	0	1	0	0	0	0	0	0	0	14855	696	24	2		2	SLIT3	5	168149356	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	7036360	168149356	12765904	178	122761											
DOCK2	1794	broad.mit.edu	37	chr5	169098200	169098200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagactcagaactctgctcCctgagttggaagcttcttgc	10	11	3	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169098200	A	A	169098200	1	1	141	0	1	0	0	0	0	0	0	0	4727	638	22	2		2	DOCK2	5	169098200	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	948844	169098200	11817060	179	122762											
MXD3	83463	broad.mit.edu	37	chr5	176734745	176734745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagacctggctcgcccCgagggccacacaacccctca	9	18	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176734745	A	A	176734745	1	1	141	0	1	0	0	0	0	0	0	0	10094	667	23	1		1	MXD3	5	176734745	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	7636545	176734745	4180515	180	122763											
MYLK4	340156	broad.mit.edu	37	chr6	2685515	2685515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggtcagggagggggcGgaggggatacgtactactcc	21	7	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2685515	T	T	2685515	1	4	141	0	1	0	0	0	0	0	0	0	10153	1131	39	1		1	MYLK4	6	2685515	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		2685515	168429552	181	122764											
ZNF184	7738	broad.mit.edu	37	chr6	27420068	27420068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggctgaaggctttccCacattcattgcattcgtacg	10	11	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27420068	A	A	27420068	3	1	141	1	0	0	0	0	1	0	0	0	17877	594	21	2	989	2	ZNF184	6	27420068	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	24734553	27420068	143694999	182	122765											
HIST1H3H	8357	broad.mit.edu	37	chr6	27776412	27776412	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgcagcaactcaatccCaaaggaaccaaaggctcttt	7	11	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27776412	A	A	27776412	1	1	141	0	1	0	0	0	0	0	0	0	7229	609	21	2		2	HIST1H3H	6	27776412	5'Flank	SNP	C	TCGA-49-4510-01A-01D-1265-08	356344	27776412	143338655	183	122766											
EHMT2	10919	broad.mit.edu	37	chr6	31857194	31857194	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaccttcaggaccagacctCcagccccatagtctcccact	5	19	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31857194	A	A	31857194	1	1	141	0	1	0	0	0	0	0	0	0	5024	870	30	3		3	EHMT2	6	31857194	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	4080782	31857194	139257873	184	122767											
COL11A2	1302	broad.mit.edu	37	chr6	33156669	33156669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcccaaagggtctcaagGgtttcacagtttagagtgta	13	7	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33156669	T	T	33156669	1	4	141	0	1	0	0	0	0	0	0	0	3700	1247	43	2		2	COL11A2	6	33156669	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1299475	33156669	137958398	185	122768											
RGL2	5863	broad.mit.edu	37	chr6	33260886	33260886	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcccagatccctctccCccatatccagtccccccgga	6	22	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33260886	A	A	33260886	2	1	141	1	0	0	0	0	0	0	0	1	13385	610	22	2		2	RGL2	6	33260886	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	104217	33260886	137854181	186	122769											
KIFC1	3833	broad.mit.edu	37	chr6	33374138	33374138	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtcttgtggacctggccGggagtgagcgacttgacccc	14	12	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33374138	T	T	33374138	3	4	141	1	0	0	0	0	1	0	0	0	8382	1116	39	1	1732	1	KIFC1	6	33374138	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	113252	33374138	137740929	187	122770											
SCUBE3	222663	broad.mit.edu	37	chr6	35211832	35211832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgaagcaggacggaccCtatgcttcccttgtggtggg	13	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35211832	A	A	35211832	3	1	141	1	0	0	0	0	1	0	0	0	14059	680	24	2	2230	2	SCUBE3	6	35211832	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	1837694	35211832	135903235	188	122771											
SLC26A8	116369	broad.mit.edu	37	chr6	35911772	35911772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtctgagtctgagactGggtggaagccatagacggat	15	8	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35911772	T	T	35911772	3	4	141	1	0	0	0	0	1	0	0	0	14637	1357	47	2	98	2	SLC26A8	6	35911772	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	699940	35911772	135203295	189	122772											
TBC1D22B	55633	broad.mit.edu	37	chr6	37298891	37298891	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattgggctgcttctcgcCgaggcatacagactcaagta	11	10	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37298891	A	A	37298891	2	1	141	1	0	0	0	0	0	0	0	1	15731	639	23	1		1	TBC1D22B	6	37298891	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	1387119	37298891	133816176	190	122773											
DNAH8	1769	broad.mit.edu	37	chr6	38825305	38825305	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgtaggttggacttctGggaattcagatgttgtggac	14	5	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38825305	T	T	38825305	2	4	141	1	0	0	0	0	0	0	0	1	4647	1335	47	2		2	DNAH8	6	38825305	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	1526414	38825305	132289762	191	122774											
POLR1C	9533	broad.mit.edu	37	chr6	43487384	43487384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctggaggttggggttacGgggataggtagggggtctgt	20	5	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43487384	T	T	43487384	1	4	141	0	1	0	0	0	0	0	0	0	12306	1131	39	1		1	POLR1C	6	43487384	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	4662079	43487384	127627683	192	122775											
MRPL14	64928	broad.mit.edu	37	chr6	44081629	44081629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggaatactcgccttccCgcttgcgcaggctggtgggg	14	13	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44081629	A	A	44081629	3	1	141	1	0	0	0	0	1	0	0	0	9873	652	23	1	52	1	MRPL14	6	44081629	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	594245	44081629	127033438	193	122776											
SLC35B2	347734	broad.mit.edu	37	chr6	44222489	44222489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcacagccttctttcccCgttgctttagacggccccgc	9	17	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44222489	A	A	44222489	3	1	141	1	0	0	0	0	1	0	0	0	14690	652	23	1	49	1	SLC35B2	6	44222489	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	140860	44222489	126892578	194	122777											
RCAN2	10231	broad.mit.edu	37	chr6	46191072	46191072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatggaagtgagaaagagGgggggatttcaaaagagatc	15	2	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46191072	T	T	46191072	1	4	141	0	1	0	0	0	0	0	0	0	13277	1247	43	2		2	RCAN2	6	46191072	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1968583	46191072	124923995	195	122778											
ICK	22858	broad.mit.edu	37	chr6	52906107	52906107	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtggtagcagtcctccCcagagtgtaaccagattttt	10	10	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52906107	A	A	52906107	1	1	141	0	1	0	0	0	0	0	0	0	7554	638	22	2		2	ICK	6	52906107	5'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	6715035	52906107	118208960	196	122779											
GCM1	8521	broad.mit.edu	37	chr6	52995724	52995724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggatgatcatgctctccCtttgacttaaatgagacaag	8	8	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52995724	A	A	52995724	3	1	141	1	0	0	0	0	1	0	0	0	6359	680	24	2	871	2	GCM1	6	52995724	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	89617	52995724	118119343	197	122780											
LGSN	51557	broad.mit.edu	37	chr6	63989862	63989862	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attacaaaagttcagtctttTtgttttggtagattagcttt	7	4	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63989862	C	C	63989862	1	2	141	0	1	0	0	0	0	0	0	0	8831	1856	64	5		5	LGSN	6	63989862	3'UTR	SNP	T	TCGA-49-4510-01A-01D-1265-08	10994138	63989862	107125205	198	122781											
FAM135A	57579	broad.mit.edu	37	chr6	71212580	71212580	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaacaaacctgatttttAcctatatattgataaatcag	4	6	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71212580	G	G	71212580	1	3	141	0	1	0	0	0	0	0	0	0	5494	406	14	5		5	FAM135A	6	71212580	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	7222718	71212580	99902487	199	122782											
SMAP1	60682	broad.mit.edu	37	chr6	71566660	71566660	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaaatcagaagaagtggcAaagaaacaactttccaaaga	7	7	1	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71566660	C	C	71566660	2	2	141	1	0	0	0	0	0	0	0	1	14880	117	5	5		5	SMAP1	6	71566660	Silent	SNP	A	TCGA-49-4510-01A-01D-1265-08	354080	71566660	99548407	200	122783											
SENP6	26054	broad.mit.edu	37	chr6	76405446	76405447	+	Intron	INS	-	T	T													tgggcaacagagtgagactcINStgtctcaaaaaaatagaaat							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76405447	T	T	76405446	6	5	141	0	1	1	1	0	0	0	0	0	14163	928	32	0		0	SENP6	6	76405446	Intron	INS	-	TCGA-49-4510-01A-01D-1265-08	4838786	76405446	94709621	201	122784											
SH3BGRL2	83699	broad.mit.edu	37	chr6	80409266	80409267	+	3'UTR	INS	-	CCC	CCC													cggagatgcattttgaagcaINScccctggtactcagcacaca							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CCC	80409267	CCC	CCC	80409266	6	5	141	0	1	1	1	0	0	0	0	0	14355	174	6	0		0	SH3BGRL2	6	80409266	3'UTR	INS	-	TCGA-49-4510-01A-01D-1265-08	4003820	80409266	90705801	202	122785											
C6orf168	84553	broad.mit.edu	37	chr6	99739596	99739596	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctttgatcagccgttcGggtcttgtccctggtaaggt	12	10	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99739596	T	T	99739596	2	4	141	1	0	0	0	0	0	0	0	1	2366	1103	39	1		1	C6orf168	6	99739596	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	19330330	99739596	71375471	203	122786											
AIM1	202	broad.mit.edu	37	chr6	106968567	106968567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtttacctttggtttgGggaagaagaaggaaagtcag	14	3	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106968567	T	T	106968567	3	4	141	1	0	0	0	0	1	0	0	0	430	1232	43	2	2266	2	AIM1	6	106968567	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	7228971	106968567	64146500	204	122787											
GPRC6A	222545	broad.mit.edu	37	chr6	117113394	117113394	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaaatgcttgtgcctgaaGatctttgcttttctgccagg	10	9	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117113394	T	T	117113394	3	4	141	1	0	0	0	0	1	0	0	0	6794	942	33	3	92	3	GPRC6A	6	117113394	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	10144827	117113394	54001673	205	122788											
TAAR8	83551	broad.mit.edu	37	chr6	132874425	132874425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtaagtcaaggctgggtGttgatagattttctgttatt	11	3	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132874425	T	T	132874425	2	4	141	1	0	0	0	0	0	0	0	1	15612	1364	48	3		3	TAAR8	6	132874425	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	15761031	132874425	38240642	206	122789											
FAM54A	113115	broad.mit.edu	37	chr6	136563884	136563884	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaagaagatacagtagggCacagcacagtttgaagataa	10	5	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136563884	T	T	136563884	1	4	141	0	1	0	0	0	0	0	0	0	5633	725	25	4		4	FAM54A	6	136563884	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	3689459	136563884	34551183	207	122790											
PEX3	8504	broad.mit.edu	37	chr6	143792568	143792568	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcagtatttatcaagtattCagcacctacttggagatggt	9	7	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143792568	T	T	143792568	4	4	141	1	0	0	0	0	0	1	0	0	11842	827	29	4	527	4	PEX3	6	143792568	Nonsense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	7228684	143792568	27322499	208	122791											
PPIL4	85313	broad.mit.edu	37	chr6	149842430	149842430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatacttattacacaccCgatgctgttaaatgctttgt	6	8	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149842430	A	A	149842430	1	1	141	0	1	0	0	0	0	0	0	0	12430	667	23	1		1	PPIL4	6	149842430	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	6049862	149842430	21272637	209	122792											
TFB1M	51106	broad.mit.edu	37	chr6	155632408	155632408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagatcttgtgattccccCtggcccagggcccacttcgt	9	14	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155632408	A	A	155632408	3	1	141	1	0	0	0	0	1	0	0	0	15916	681	24	2	865	2	TFB1M	6	155632408	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	5789978	155632408	15482659	210	122793											
FAM120B	84498	broad.mit.edu	37	chr6	170627878	170627878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcccatgtatacaggccCtgaatccaggcaagaagttc	9	11	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170627878	A	A	170627878	3	1	141	1	0	0	0	0	1	0	0	0	5463	681	24	2	1402	2	FAM120B	6	170627878	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	14995470	170627878	487189	211	122794											
PRKAR1B	5575	broad.mit.edu	37	chr7	720282	720282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttcaccacagggttcgGgggggtgggcgacacctcct	16	13	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	720282	T	T	720282	3	4	141	1	0	0	0	0	1	0	0	0	12610	1232	43	2	922	2	PRKAR1B	7	720282	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08		720282	158418381	212	122795											
SUN1	23353	broad.mit.edu	37	chr7	883105	883105	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtgctcacggcgcacccCgcggcccccgggcccgtgtc	14	20	1	0	rs113652875	by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	883105	A	A	883105	2	1	141	1	0	0	0	0	0	0	0	1	15509	639	23	1		1	SUN1	7	883105	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	162823	883105	158255558	213	122796											
TNRC18	84629	broad.mit.edu	37	chr7	5348825	5348825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtagaaccacttgacgcGgaccaccatgttgttgcccc	11	13	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5348825	T	T	5348825	3	4	141	1	0	0	0	0	1	0	0	0	16462	1116	39	1	355	1	TNRC18	7	5348825	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	4465720	5348825	153789838	214	122797											
KDELR2	11014	broad.mit.edu	37	chr7	6509271	6509271	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaaaaatgagaggcctcCcacagggaccaccagaaact	8	12	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6509271	A	A	6509271	4	1	141	1	0	0	0	0	0	1	0	0	8190	632	22	2	518	2	KDELR2	7	6509271	Nonsense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	1160446	6509271	152629392	215	122798											
GLCCI1	113263	broad.mit.edu	37	chr7	8043640	8043640	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacaggacagtggccacGggatcctcatgttcactacc	9	15	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8043640	T	T	8043640	3	4	141	1	0	0	0	0	1	0	0	0	6495	1116	39	1	566	1	GLCCI1	7	8043640	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1534369	8043640	151095023	216	122799											
DNAH11	8701	broad.mit.edu	37	chr7	21856246	21856246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctctggtgatagatccCcagcaacagggaattaagtg	12	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21856246	A	A	21856246	2	1	141	1	0	0	0	0	0	0	0	1	4639	610	22	2		2	DNAH11	7	21856246	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	13812606	21856246	137282417	217	122800											
DNAH11	8701	broad.mit.edu	37	chr7	21906171	21906171	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggaagtgggtagaatcCgagtgtccagaaaaagaaaa	14	4	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21906171	A	A	21906171	2	1	141	1	0	0	0	0	0	0	0	1	4639	639	23	1		1	DNAH11	7	21906171	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	49925	21906171	137232492	218	122801											
CDCA7L	55536	broad.mit.edu	37	chr7	21947982	21947982	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttggccagcttcttggtGgggaactgaaaggctactcg	14	8	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21947982	T	T	21947982	2	4	141	1	0	0	0	0	0	0	0	1	3121	1335	47	2		2	CDCA7L	7	21947982	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	41811	21947982	137190681	219	122802											
GHRHR	2692	broad.mit.edu	37	chr7	31011594	31011594	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaggctccactgccccCggaactacgtccacacccag	9	19	0	0	rs35515360		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31011594	A	A	31011594	2	1	141	1	0	0	0	0	0	0	0	1	6437	643	23	1		1	GHRHR	7	31011594	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	9063612	31011594	128127069	220	122803											
HECW1	23072	broad.mit.edu	37	chr7	43484237	43484237	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggaggagcccttggaggAggaagcaacgacccagagcc	15	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43484237	G	G	43484237	3	3	141	1	0	0	0	0	1	0	0	0	7109	304	11	5	1500	5	HECW1	7	43484237	Missense_Mutation	SNP	A	TCGA-49-4510-01A-01D-1265-08	12472643	43484237	115654426	221	122804											
UBE2D4	51619	broad.mit.edu	37	chr7	43982455	43982455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggccaccatcatgggccCggtaggtagtagctgctgag	15	11	1	1	rs149083828		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43982455	A	A	43982455	3	1	141	1	0	0	0	0	1	0	0	0	16977	666	23	1	129	1	UBE2D4	7	43982455	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	498218	43982455	115156208	222	122805											
SPDYE1	285955	broad.mit.edu	37	chr7	44048438	44048438	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctaggagcaggggtgGggggagggggatggggtcct	22	7	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44048438	T	T	44048438	1	4	141	0	1	0	0	0	0	0	0	0	15145	1247	43	2		2	SPDYE1	7	44048438	3'UTR	SNP	G	TCGA-49-4510-01A-01D-1265-08	65983	44048438	115090225	223	122806											
ZMIZ2	83637	broad.mit.edu	37	chr7	44797365	44797365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggtatggtgcccacatgGgtgggtgggcgggttttatg	19	5	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44797365	T	T	44797365	1	4	141	0	1	0	0	0	0	0	0	0	17823	1247	43	2		2	ZMIZ2	7	44797365	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	748927	44797365	114341298	224	122807											
CCT6A	908	broad.mit.edu	37	chr7	56130642	56130642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcagcttggttggaagtGggaagttgagtcgaattagg	17	3	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56130642	T	T	56130642	1	4	141	0	1	0	0	0	0	0	0	0	2987	1363	47	2		2	CCT6A	7	56130642	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	11333277	56130642	103008021	225	122808											
ZNF680	340252	broad.mit.edu	37	chr7	63982389	63982389	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataagggttgaggattggTtaaaggctttgccacattcc	11	6	0	1	rs149707711		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63982389	C	C	63982389	3	2	141	1	0	0	0	0	1	0	0	0	18214	1725	60	5	853	5	ZNF680	7	63982389	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	7851747	63982389	95156274	226	122809											
GTF2IRD2	84163	broad.mit.edu	37	chr7	74212333	74212333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaacacttgtttttgctcGggacactcggtgtctgacaa	10	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74212333	T	T	74212333	2	4	141	1	0	0	0	0	0	0	0	1	6934	1103	39	1		1	GTF2IRD2	7	74212333	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	10229944	74212333	84926330	227	122810											
PION	54103	broad.mit.edu	37	chr7	77006092	77006093	+	Intron	INS	-	AA	AA													acagagtgagactccatctcINSaaaaaaaaaaaaaaaaaaaa					rs149519043		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	77006093	AA	AA	77006092	6	5	141	0	1	1	1	0	0	0	0	0	12029	841	29	0		0	PION	7	77006092	Intron	INS	-	TCGA-49-4510-01A-01D-1265-08	2793759	77006092	82132571	228	122811											
AKAP9	10142	broad.mit.edu	37	chr7	91709110	91709110	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaaaagtggctgctgctCttgtcagtcaaatccaactt	8	9	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91709110	A	A	91709110	3	1	141	1	0	0	0	0	1	0	0	0	459	913	32	3	7785	3	AKAP9	7	91709110	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	14703018	91709110	67429553	229	122812											
TSC22D4	81628	broad.mit.edu	37	chr7	100074811	100074811	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttataaagtgatggagaaggAggaggagaggggggggagga	22	0	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100074811	G	G	100074811	1	3	141	0	1	0	0	0	0	0	0	0	16735	319	11	5		5	TSC22D4	7	100074811	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	8365701	100074811	59063852	230	122813											
LHFPL3	375612	broad.mit.edu	37	chr7	103969430	103969430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgacggcgtggacacccCgcaagccggctatttcgggc	15	14	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103969430	A	A	103969430	3	1	141	1	0	0	0	0	1	0	0	0	8838	652	23	1	205	1	LHFPL3	7	103969430	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	3894619	103969430	55169233	231	122814											
KCND2	3751	broad.mit.edu	37	chr7	119915159	119915159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggataccgacaccgctgGggagagcgccttgcccacca	13	16	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119915159	T	T	119915159	3	4	141	1	0	0	0	0	1	0	0	0	8089	1232	43	2	475	2	KCND2	7	119915159	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	15945729	119915159	39223504	232	122815											
AKR1B10	57016	broad.mit.edu	37	chr7	134225913	134225913	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgactacctccactcatgTcccattttagccaagcttat	5	13	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134225913	C	C	134225913	1	2	141	0	1	0	0	0	0	0	0	0	467	1682	58	5		5	AKR1B10	7	134225913	3'UTR	SNP	T	TCGA-49-4510-01A-01D-1265-08	14310754	134225913	24912750	233	122816											
CNOT4	4850	broad.mit.edu	37	chr7	135080442	135080442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtcactggatgtctgtGgggagctggggaaaggagga	19	6	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135080442	T	T	135080442	3	4	141	1	0	0	0	0	1	0	0	0	3653	1348	47	2	972	2	CNOT4	7	135080442	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	854529	135080442	24058221	234	122817											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138432326	138432326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgcggaggggagacaCacaacgcctgaggcctcagc	17	12	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138432326	A	A	138432326	1	1	141	0	1	0	0	0	0	0	0	0	1174	493	17	3		3	ATP6V0A4	7	138432326	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	3351884	138432326	20706337	235	122818											
EPHB6	2051	broad.mit.edu	37	chr7	142564781	142564781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggactgctgccggccacGgcccctacgggggcaaagtc	14	17	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142564781	T	T	142564781	3	4	141	1	0	0	0	0	1	0	0	0	5220	1116	39	1	1731	1	EPHB6	7	142564781	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	4132455	142564781	16573882	236	122819											
ZYX	7791	broad.mit.edu	37	chr7	143079311	143079311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggggtagagggacccCggccgacgtctttctccttc	15	12	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143079311	A	A	143079311	1	1	141	0	1	0	0	0	0	0	0	0	18383	667	23	1		1	ZYX	7	143079311	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	514530	143079311	16059352	237	122820											
CSMD1	64478	broad.mit.edu	37	chr8	4494829	4494829	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataatctgtgtattcaaacAgtgctaactgtaatataaaa	5	6	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4494829	T	T	4494829	1	4	141	0	1	0	0	0	0	0	0	0	3978	203	7	5		5	CSMD1	8	4494829	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08		4494829	141869193	238	122821											
XPO7	23039	broad.mit.edu	37	chr8	21862531	21862531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaacctgtcagcattcCgtcgagaagtcaacgactca	8	14	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21862531	A	A	21862531	3	1	141	1	0	0	0	0	1	0	0	0	17576	652	23	1	3358	1	XPO7	8	21862531	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	17367702	21862531	124501491	239	122822											
CLU	1191	broad.mit.edu	37	chr8	27472186	27472186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaccggtcagcggcaccCtgtgcccgcgcgctcctcct	10	20	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27472186	A	A	27472186	3	1	141	1	0	0	0	0	1	0	0	0	3600	681	24	2	1436	2	CLU	8	27472186	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	5609655	27472186	118891836	240	122823											
PROSC	11212	broad.mit.edu	37	chr8	37635682	37635682	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattttcatttcgatattccCtgtgtcccagcgcagtcctg	8	12	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37635682	A	A	37635682	1	1	141	0	1	0	0	0	0	0	0	0	12665	696	24	2		2	PROSC	8	37635682	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	10163496	37635682	108728340	241	122824											
PXDNL	137902	broad.mit.edu	37	chr8	52321434	52321434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtcttcaggagacccCgaggcaccgaagggtctctg	13	13	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52321434	A	A	52321434	3	1	141	1	0	0	0	0	1	0	0	0	12956	652	23	1	1669	1	PXDNL	8	52321434	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	14685752	52321434	94042588	242	122825											
FAM110B	90362	broad.mit.edu	37	chr8	59059695	59059695	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaagggctaattctgaCataatatccctcaacttccg	6	11	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59059695	T	T	59059695	2	4	141	1	0	0	0	0	0	0	0	1	5443	477	17	4		4	FAM110B	8	59059695	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	6738261	59059695	87304327	243	122826											
PDE7A	5150	broad.mit.edu	37	chr8	66701194	66701194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattggatcaatcaaaagccCgctgcataatctctctcttc	5	13	4	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66701194	A	A	66701194	1	1	141	0	1	0	0	0	0	0	0	0	11745	667	23	1		1	PDE7A	8	66701194	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	7641499	66701194	79662828	244	122827											
CA1	759	broad.mit.edu	37	chr8	86249329	86249329	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgattgttagcctgatgctCcacaaactctagcttatctt	6	12	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86249329	A	A	86249329	1	1	141	0	1	0	0	0	0	0	0	0	2536	870	30	3		3	CA1	8	86249329	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	19548135	86249329	60114693	245	122828											
PTDSS1	9791	broad.mit.edu	37	chr8	97311854	97311854	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgtattgttaaaaaggaAatctatctatctgcatggta	7	4	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97311854	C	C	97311854	1	2	141	0	1	0	0	0	0	0	0	0	12842	29	1	5		5	PTDSS1	8	97311854	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	11062525	97311854	49052168	246	122829											
FBXO43	286151	broad.mit.edu	37	chr8	101146007	101146007	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaatagaacactgcatgGgggagttctatatttagtct	10	5	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101146007	T	T	101146007	1	4	141	0	1	0	0	0	0	0	0	0	5809	1247	43	2		2	FBXO43	8	101146007	3'UTR	SNP	G	TCGA-49-4510-01A-01D-1265-08	3834153	101146007	45218015	247	122830											
SNX31	169166	broad.mit.edu	37	chr8	101625239	101625239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccagagagcttgccctcCttgccaaaccgaatgagaaa	8	12	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101625239	A	A	101625239	3	1	141	1	0	0	0	0	1	0	0	0	15015	680	24	2	851	2	SNX31	8	101625239	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	479232	101625239	44738783	248	122831											
RIMS2	9699	broad.mit.edu	37	chr8	104831806	104831806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggggttttttcatcccCaccaaatatcttacaaaatg	5	10	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104831806	A	A	104831806	3	1	141	1	0	0	0	0	1	0	0	0	13479	594	21	2	783	2	RIMS2	8	104831806	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	3206567	104831806	41532216	249	122832											
ZFPM2	23414	broad.mit.edu	37	chr8	106813793	106813793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggccttctttccctgtgGgccctttcctatctcagttt	8	13	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106813793	T	T	106813793	3	4	141	1	0	0	0	0	1	0	0	0	17784	1232	43	2	1513	2	ZFPM2	8	106813793	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1981987	106813793	39550229	250	122833											
EIF3E	3646	broad.mit.edu	37	chr8	109241351	109241351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttccatggctgcatccCaattctgcattaagatttca	7	11	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109241351	A	A	109241351	3	1	141	1	0	0	0	0	1	0	0	0	5057	595	21	2	824	2	EIF3E	8	109241351	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2427558	109241351	37122671	251	122834											
PKHD1L1	93035	broad.mit.edu	37	chr8	110445369	110445369	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacaattctaaccatagtGggttctggattttctcctag	9	9	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110445369	T	T	110445369	2	4	141	1	0	0	0	0	0	0	0	1	12067	1335	47	2		2	PKHD1L1	8	110445369	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	1204018	110445369	35918653	252	122835											
CSMD3	114788	broad.mit.edu	37	chr8	113649131	113649131	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccttccagtcgataaccCgaagagcatgagaaggtcag	11	10	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113649131	T	T	113649131	2	4	141	1	0	0	0	0	0	0	0	1	3980	639	23	4		4	CSMD3	8	113649131	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	3203762	113649131	32714891	253	122836											
RNF139	11236	broad.mit.edu	37	chr8	125499067	125499084	+	In_Frame_Del	DEL	CTGTTTGTCTCTGCTTGC	-	-													ttcgtagacattttcctgtgCtgtttgtctctgcttgcctg					rs142948801		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125499084	-	-	125499067	7	5	141	1	0	1	0	1	0	0	0	0	13553	796	28	0	1183	0	RNF139	8	125499067	In_Frame_Del	DEL	CTGTTTGTCTCTGCTTGC	TCGA-49-4510-01A-01D-1265-08	11849936	125499067	20864955	254	122837											
TATDN1	83940	broad.mit.edu	37	chr8	125534428	125534428	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgacagctctccctattacAtcctgtaagtcatctgtaaa	5	12	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125534428	G	G	125534428	2	3	141	1	0	0	0	0	0	0	0	1	15710	214	8	5		5	TATDN1	8	125534428	Silent	SNP	A	TCGA-49-4510-01A-01D-1265-08	35361	125534428	20829594	255	122838											
COL22A1	169044	broad.mit.edu	37	chr8	139609105	139609105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgagagaactgcttcctGggctcttctctgcaagaccg	12	11	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139609105	T	T	139609105	1	4	141	0	1	0	0	0	0	0	0	0	3713	1363	47	2		2	COL22A1	8	139609105	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	14074677	139609105	6754917	256	122839											
BAI1	575	broad.mit.edu	37	chr8	143570554	143570554	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggatgtgaagggggaGgccagggggcctggaggagt	21	7	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143570554	A	A	143570554	1	1	141	0	1	0	0	0	0	0	0	0	1303	1015	35	4		4	BAI1	8	143570554	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3961449	143570554	2793468	257	122840											
SHARPIN	81858	broad.mit.edu	37	chr8	145158166	145158166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctcagggcgtcccccCgccctacatcgcacgaggag	12	18	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145158166	A	A	145158166	1	1	141	0	1	0	0	0	0	0	0	0	14380	667	23	1		1	SHARPIN	8	145158166	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1587612	145158166	1205856	258	122841											
ADCK5	203054	broad.mit.edu	37	chr8	145617075	145617075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgcatgacgtgagtgcGggggggcgggggcgggtcag	24	7	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145617075	T	T	145617075	1	4	141	0	1	0	0	0	0	0	0	0	291	1131	39	1		1	ADCK5	8	145617075	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	458909	145617075	746947	259	122842											
MPDZ	8777	broad.mit.edu	37	chr9	13188756	13188756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgcttataaatataaaGggaagcaataaagtctgaat	7	3	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13188756	T	T	13188756	1	4	141	0	1	0	0	0	0	0	0	0	9816	1015	35	2		2	MPDZ	9	13188756	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		13188756	128024675	260	122843											
CNTLN	54875	broad.mit.edu	37	chr9	17298270	17298270	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagagctgatccagcagcttCaggttctcaatatggacaca	9	11	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17298270	G	G	17298270	3	3	141	1	0	0	0	0	1	0	0	0	3671	827	29	4	1092	4	CNTLN	9	17298270	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	4109514	17298270	123915161	261	122844											
IFNA21	3452	broad.mit.edu	37	chr9	21166213	21166213	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagtccacattcatcagGggagtctcttccaccccaac	8	14	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21166213	T	T	21166213	2	4	141	1	0	0	0	0	0	0	0	1	7608	1219	43	2		2	IFNA21	9	21166213	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	3867943	21166213	120047218	262	122845											
OR13F1	138805	broad.mit.edu	37	chr9	107266550	107266550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataacataaaaaaatgttcCcggcaaattggacatctgta	6	8	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107266550	A	A	107266550	3	1	141	1	0	0	0	0	1	0	0	0	11035	623	22	2	9	2	OR13F1	9	107266550	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	86100337	107266550	33946881	263	122846											
SVEP1	79987	broad.mit.edu	37	chr9	113166722	113166722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatatgtgttatgttttccGggagaggacattttttagga	12	3	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113166722	T	T	113166722	3	4	141	1	0	0	0	0	1	0	0	0	15538	1116	39	1	1204	1	SVEP1	9	113166722	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	5900172	113166722	28046709	264	122847											
KIAA1958	158405	broad.mit.edu	37	chr9	115336670	115336670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgttgaaaggtaccctGggagaccagtgaaagcaaag	13	9	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115336670	T	T	115336670	3	4	141	1	0	0	0	0	1	0	0	0	8334	1348	47	2	312	2	KIAA1958	9	115336670	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	2169948	115336670	25876761	265	122848											
NUP188	23511	broad.mit.edu	37	chr9	131765445	131765445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggacgggaacggtctcGggtcagaatcctggttgtac	15	8	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131765445	T	T	131765445	1	4	141	0	1	0	0	0	0	0	0	0	10853	1131	39	1		1	NUP188	9	131765445	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	16428775	131765445	9447986	266	122849											
FUBP3	8939	broad.mit.edu	37	chr9	133495796	133495796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaccaagctgactttcGgggtgtacgcggcgatttca	12	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133495796	T	T	133495796	3	4	141	1	0	0	0	0	1	0	0	0	6153	1116	39	1	756	1	FUBP3	9	133495796	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1730351	133495796	7717635	267	122850											
NUP214	8021	broad.mit.edu	37	chr9	134015959	134015959	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaagactcttcctcctGctccagttctcatgttactt	5	12	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134015959	C	C	134015959	3	2	141	1	0	0	0	0	1	0	0	0	10857	1319	46	4	1198	4	NUP214	9	134015959	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	520163	134015959	7197472	268	122851											
PMPCA	23203	broad.mit.edu	37	chr9	139312569	139312569	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccttcctggtgagtcCtggtgctgggtctgatggcg	15	11	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139312569	T	T	139312569	1	4	141	0	1	0	0	0	0	0	0	0	12235	696	24	4		4	PMPCA	9	139312569	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	5296610	139312569	1900862	269	122852											
CUBN	8029	broad.mit.edu	37	chr10	16970128	16970128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggagatgagataacatGggattaaaaaatatttgaac	11	2	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16970128	T	T	16970128	1	4	141	0	1	0	0	0	0	0	0	0	4084	1363	47	2		2	CUBN	10	16970128	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		16970128	118564619	270	122853											
LYZL1	84569	broad.mit.edu	37	chr10	29600040	29600040	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgccctaggatttgcagtgAatgtccaaatgcctgtgtca	10	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29600040	G	G	29600040	1	3	141	0	1	0	0	0	0	0	0	0	9219	261	9	5		5	LYZL1	10	29600040	3'UTR	SNP	A	TCGA-49-4510-01A-01D-1265-08	12629912	29600040	105934707	271	122854											
NRP1	8829	broad.mit.edu	37	chr10	33475497	33475497	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttcaagtctcactaatCaaaagcttcctgcgctgagc	6	12	4	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33475497	G	G	33475497	1	3	141	0	1	0	0	0	0	0	0	0	10755	841	29	4		4	NRP1	10	33475497	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	3875457	33475497	102059250	272	122855											
ZNF25	219749	broad.mit.edu	37	chr10	38241751	38241751	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcaaaaggtttctccccTgtgtgtgttttctgatgttc	8	9	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38241751	C	C	38241751	2	2	141	1	0	0	0	0	0	0	0	1	17920	1567	55	5		5	ZNF25	10	38241751	Silent	SNP	T	TCGA-49-4510-01A-01D-1265-08	4766254	38241751	97292996	273	122856											
SLC18A3	6572	broad.mit.edu	37	chr10	50819918	50819918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgcatcgtgcccgcctgcCgctccttcgcgccgctagtg	12	18	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50819918	A	A	50819918	3	1	141	1	0	0	0	0	1	0	0	0	14540	652	23	1	1134	1	SLC18A3	10	50819918	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	12578167	50819918	84714829	274	122857											
AGAP5	729092	broad.mit.edu	37	chr10	75487024	75487024	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgacaatagccacgccaaCtctgtgtctgtggcagcatc	10	12	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75487024	T	T	75487024	1	4	141	0	1	0	0	0	0	0	0	0	371	580	20	4		4	AGAP5	10	75487024	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	24667106	75487024	60047723	275	122858											
NDST2	8509	broad.mit.edu	37	chr10	75565400	75565400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtacttctgtgcaagtGggacaggaggaagggtctgt	15	6	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75565400	T	T	75565400	3	4	141	1	0	0	0	0	1	0	0	0	10351	1348	47	2	992	2	NDST2	10	75565400	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	78376	75565400	59969347	276	122859											
WAPAL	23063	broad.mit.edu	37	chr10	88218726	88218726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaacaatgttagttgttaaCtaataaacaaaaaacttact	4	5	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88218726	A	A	88218726	1	1	141	0	1	0	0	0	0	0	0	0	17375	580	20	3		3	WAPAL	10	88218726	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	12653326	88218726	47316021	277	122860											
DNTT	1791	broad.mit.edu	37	chr10	98079094	98079094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgtacaaaagatctccCagtatgcgtgtcagagaaga	10	8	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98079094	A	A	98079094	3	1	141	1	0	0	0	0	1	0	0	0	4720	595	21	2	464	2	DNTT	10	98079094	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	9860368	98079094	37455653	278	122861											
TLL2	7093	broad.mit.edu	37	chr10	98170294	98170294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccgcccaagcagctccCgcacggggcagcggagcaaa	12	18	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98170294	A	A	98170294	1	1	141	0	1	0	0	0	0	0	0	0	16069	667	23	1		1	TLL2	10	98170294	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	91200	98170294	37364453	279	122862											
SLIT1	6585	broad.mit.edu	37	chr10	98797490	98797490	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaggtagacagctgtccCggaaccagcgtgaactggtt	13	9	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98797490	A	A	98797490	2	1	141	1	0	0	0	0	0	0	0	1	14853	639	23	1		1	SLIT1	10	98797490	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	627196	98797490	36737257	280	122863											
SORCS3	22986	broad.mit.edu	37	chr10	106983137	106983137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaataaacctatgagcccaCaaaattgaataaaacatacc	3	9	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106983137	A	A	106983137	1	1	141	0	1	0	0	0	0	0	0	0	15046	493	17	3		3	SORCS3	10	106983137	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	8185647	106983137	28551610	281	122864											
NRAP	4892	broad.mit.edu	37	chr10	115348786	115348786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaatctcagtggcatctGggttcacctccccactctga	9	14	4	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115348786	T	T	115348786	3	4	141	1	0	0	0	0	1	0	0	0	10733	1348	47	2	55	2	NRAP	10	115348786	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	8365649	115348786	20185961	282	122865											
NRAP	4892	broad.mit.edu	37	chr10	115383400	115383400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcttatacagtttctaaGgggatttaggagagaaggtg	13	4	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115383400	T	T	115383400	1	4	141	0	1	0	0	0	0	0	0	0	10733	1015	35	2		2	NRAP	10	115383400	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	34614	115383400	20151347	283	122866											
BAG3	9531	broad.mit.edu	37	chr10	121436825	121436825	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaaatcagactcggaacCgatgtgtgctttagggaatt	11	6	1	1	rs116329258	by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121436825	A	A	121436825	1	1	141	0	1	0	0	0	0	0	0	0	1293	667	23	1		1	BAG3	10	121436825	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	6053425	121436825	14097922	284	122867											
EPS8L2	64787	broad.mit.edu	37	chr11	727020	727020	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggcctgcggaggggaagcCcacccacaatgcatggagta	16	11	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	727020	G	G	727020	1	3	141	0	1	0	0	0	0	0	0	0	5238	638	22	4		4	EPS8L2	11	727020	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08		727020	134279496	285	122868											
TPP1	1200	broad.mit.edu	37	chr11	6636052	6636052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcccccttagcactccCcatagttgtttgaaaacgtc	6	14	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6636052	A	A	6636052	1	1	141	0	1	0	0	0	0	0	0	0	16535	638	22	2		2	TPP1	11	6636052	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	5909032	6636052	128370464	286	122869											
WEE1	7465	broad.mit.edu	37	chr11	9598349	9598349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtccttttcacttaatacCatcagttcttattggacttg	6	9	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9598349	A	A	9598349	1	1	141	0	1	0	0	0	0	0	0	0	17471	609	21	2		2	WEE1	11	9598349	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	2962297	9598349	125408167	287	122870											
EIF4G2	1982	broad.mit.edu	37	chr11	10827585	10827585	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgccctggggttttcccCaggaactcgctgattaataa	9	10	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10827585	A	A	10827585	2	1	141	1	0	0	0	0	0	0	0	1	5079	581	21	2		2	EIF4G2	11	10827585	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	1229236	10827585	124178931	288	122871											
SPTY2D1	144108	broad.mit.edu	37	chr11	18655731	18655731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcccctacattgatgcccCagctgctacttaccggcaca	8	16	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18655731	A	A	18655731	1	1	141	0	1	0	0	0	0	0	0	0	15244	609	21	2		2	SPTY2D1	11	18655731	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	7828146	18655731	116350785	289	122872											
EIF3M	10480	broad.mit.edu	37	chr11	32610067	32610067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcattgtattaaaacactGgaaatgcatatttaactaga	5	6	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32610067	T	T	32610067	1	4	141	0	1	0	0	0	0	0	0	0	5065	1363	47	2		2	EIF3M	11	32610067	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	13954336	32610067	102396449	290	122873											
DGKZ	8525	broad.mit.edu	37	chr11	46400701	46400701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggcctggggccaaggtGggaggaggaggggctgccag	22	9	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46400701	T	T	46400701	1	4	141	0	1	0	0	0	0	0	0	0	4514	1363	47	2		2	DGKZ	11	46400701	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	13790634	46400701	88605815	291	122874											
NUP160	23279	broad.mit.edu	37	chr11	47857256	47857256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtagagtcccatggtggGggaataagcaagccgtaatt	14	7	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47857256	T	T	47857256	3	4	141	1	0	0	0	0	1	0	0	0	10852	1232	43	2	3382	2	NUP160	11	47857256	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1456555	47857256	87149260	292	122875											
NUP160	23279	broad.mit.edu	37	chr11	47869353	47869353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcgacgaaaatttataCaccaaaccctaccttccagg	5	13	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47869353	A	A	47869353	1	1	141	0	1	0	0	0	0	0	0	0	10852	493	17	3		3	NUP160	11	47869353	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	12097	47869353	87137163	293	122876											
SSRP1	6749	broad.mit.edu	37	chr11	57099700	57099700	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgaccatctcatagagGgatcctgacatgttcttggt	11	10	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57099700	T	T	57099700	2	4	141	1	0	0	0	0	0	0	0	1	15312	1219	43	2		2	SSRP1	11	57099700	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	9230347	57099700	77906816	294	122877											
AHNAK	79026	broad.mit.edu	37	chr11	62300103	62300103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagggactttgactttccCttctactctggggagtgtga	11	9	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62300103	A	A	62300103	3	1	141	1	0	0	0	0	1	0	0	0	414	681	24	2	16006	2	AHNAK	11	62300103	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	5200403	62300103	72706413	295	122878											
SAPS3	55291	broad.mit.edu	37	chr11	68312366	68312366	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagatgaatgatagactGggagaagatgaatccttgct	11	7	0	7			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68312366	T	T	68312366	2	4	141	1	0	0	0	0	0	0	0	1	13950	1335	47	2		2	SAPS3	11	68312366	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	6012263	68312366	66694150	296	122879											
SAPS3	55291	broad.mit.edu	37	chr11	68377483	68377483	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctcccagcagcagtccCgagcagaggtaaccacccgc	11	17	0	1	rs148447188	byFrequency	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68377483	A	A	68377483	2	1	141	1	0	0	0	0	0	0	0	1	13950	639	23	1		1	SAPS3	11	68377483	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	65117	68377483	66629033	297	122880											
USP35	57558	broad.mit.edu	37	chr11	77921874	77921874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttagataagtcatttcccCtctaagtcttttttgtaaat	5	8	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77921874	A	A	77921874	1	1	141	0	1	0	0	0	0	0	0	0	17193	696	24	2		2	USP35	11	77921874	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	9544391	77921874	57084642	298	122881											
FOLH1B	219595	broad.mit.edu	37	chr11	89409241	89409241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggggagggggttataaCtttatatttatagttttcct	13	3	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89409241	A	A	89409241	1	1	141	0	1	0	0	0	0	0	0	0	6038	580	20	3		3	FOLH1B	11	89409241	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	11487367	89409241	45597275	299	122882											
NAALAD2	10003	broad.mit.edu	37	chr11	89892584	89892584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagataactgttctgccagGggtattttgcttatctcttt	8	8	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89892584	T	T	89892584	1	4	141	0	1	0	0	0	0	0	0	0	10222	1247	43	2		2	NAALAD2	11	89892584	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	483343	89892584	45113932	300	122883											
NPAT	4863	broad.mit.edu	37	chr11	108032008	108032008	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccctgagccaggtgtccGgggcacaggtaaatcactac	12	13	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108032008	T	T	108032008	2	4	141	1	0	0	0	0	0	0	0	1	10661	1115	39	1		1	NPAT	11	108032008	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	18139424	108032008	26974508	301	122884											
ATM	472	broad.mit.edu	37	chr11	108236107	108236107	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtcttaatgagactacaaGagaaactgaaaggagtggaa	12	4	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108236107	T	T	108236107	4	4	141	1	0	0	0	0	0	1	0	0	1113	943	33	3	9289	3	ATM	11	108236107	Nonsense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	204099	108236107	26770409	302	122885											
EXPH5	23086	broad.mit.edu	37	chr11	108383265	108383265	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgggtactgatatacttTctgttttgcttaacttttca	8	6	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108383265	C	C	108383265	3	2	141	1	0	0	0	0	1	0	0	0	5365	1783	62	5	3004	5	EXPH5	11	108383265	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	147158	108383265	26623251	303	122886											
MFRP	83552	broad.mit.edu	37	chr11	119212363	119212363	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagactggcactggtgctcCgcttcctggcagacagagcg	13	14	0	3	rs138370910	byFrequency	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119212363	A	A	119212363	2	1	141	1	0	0	0	0	0	0	0	1	9619	639	23	1		1	MFRP	11	119212363	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	10829098	119212363	15794153	304	122887											
ROBO4	54538	broad.mit.edu	37	chr11	124765702	124765702	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagctgagccacaccgcCggtctaggcttggggccctc	12	16	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124765702	A	A	124765702	2	1	141	1	0	0	0	0	0	0	0	1	13627	639	23	1		1	ROBO4	11	124765702	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	5553339	124765702	10240814	305	122888											
KDM5A	5927	broad.mit.edu	37	chr12	404966	404966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgctagaacctttccCaaaaaataccataaaacaaa	6	9	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	404966	A	A	404966	1	1	141	0	1	0	0	0	0	0	0	0	8203	609	21	2		2	KDM5A	12	404966	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08		404966	133446929	306	122889											
KDM5A	5927	broad.mit.edu	37	chr12	442778	442778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccagttgctctgcagCatgagatggcacaccatacc	8	15	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	442778	A	A	442778	3	1	141	1	0	0	0	0	1	0	0	0	8203	710	25	3	3612	3	KDM5A	12	442778	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	37812	442778	133409117	307	122890											
TEAD4	7004	broad.mit.edu	37	chr12	3104108	3104108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggccctcgccatctaccCgccctgtggcaggcgcaaaa	12	16	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3104108	A	A	3104108	3	1	141	1	0	0	0	0	1	0	0	0	15863	652	23	1	178	1	TEAD4	12	3104108	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2661330	3104108	130747787	308	122891											
EFCAB4B	84766	broad.mit.edu	37	chr12	3806150	3806150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctggagactaccctccCgtcaggggcagccatcgcga	14	14	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3806150	A	A	3806150	3	1	141	1	0	0	0	0	1	0	0	0	4977	652	23	1	2439	1	EFCAB4B	12	3806150	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	702042	3806150	130045745	309	122892											
KCNA1	3736	broad.mit.edu	37	chr12	5020769	5020769	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatgcgctacttcgacccCctgaggaacgagtacttctt	9	14	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5020769	A	A	5020769	2	1	141	1	0	0	0	0	0	0	0	1	8071	610	22	2		2	KCNA1	12	5020769	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	1214619	5020769	128831126	310	122893											
NTF3	4908	broad.mit.edu	37	chr12	5603830	5603830	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaccgaggggagtactcGgtatgtgacagtgagagtct	15	7	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5603830	T	T	5603830	2	4	141	1	0	0	0	0	0	0	0	1	10791	1103	39	1		1	NTF3	12	5603830	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	583061	5603830	128248065	311	122894											
GNB3	2784	broad.mit.edu	37	chr12	6952602	6952602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggaactttgtggcatgtGgggggctggacaacatgtgt	17	6	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6952602	T	T	6952602	3	4	141	1	0	0	0	0	1	0	0	0	6583	1348	47	2	361	2	GNB3	12	6952602	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1348772	6952602	126899293	312	122895											
GNB3	2784	broad.mit.edu	37	chr12	6954758	6954758	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgccctcagttcttcccCaatggagaggccatctgcac	9	16	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6954758	A	A	6954758	2	1	141	1	0	0	0	0	0	0	0	1	6583	581	21	2		2	GNB3	12	6954758	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	2156	6954758	126897137	313	122896											
ATN1	1822	broad.mit.edu	37	chr12	7051006	7051006	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcacccccaccctcccCccaccgtgcccttggcctgc	8	23	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7051006	A	A	7051006	1	1	141	0	1	0	0	0	0	0	0	0	1115	638	22	2		2	ATN1	12	7051006	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	96248	7051006	126800889	314	122897											
CLEC12B	387837	broad.mit.edu	37	chr12	10168296	10168296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcagaagttggttctGggaagatggctctgttccct	13	9	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10168296	T	T	10168296	3	4	141	1	0	0	0	0	1	0	0	0	3530	1357	47	2	668	2	CLEC12B	12	10168296	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	3117290	10168296	123683599	315	122898											
CLEC12B	387837	broad.mit.edu	37	chr12	10168364	10168364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggtaaacacaagctttcCatggaatcctgggaaaatta	10	7	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10168364	A	A	10168364	1	1	141	0	1	0	0	0	0	0	0	0	3530	609	21	2		2	CLEC12B	12	10168364	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	68	10168364	123683531	316	122899											
CLEC9A	283420	broad.mit.edu	37	chr12	10213811	10213811	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaaactttacagaatggaaGagaagctgtgcccttcagat	9	8	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10213811	T	T	10213811	3	4	141	1	0	0	0	0	1	0	0	0	3554	933	33	3	268	3	CLEC9A	12	10213811	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	45447	10213811	123638084	317	122900											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25398284	T	T	25398284	3	4	141	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	15184473	25398284	108453611	318	122901											
BICD1	636	broad.mit.edu	37	chr12	32491750	32491750	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttccctttgtgatcagagCcgtcccaggacttcaggggc	11	14	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32491750	G	G	32491750	3	3	141	1	0	0	0	0	1	0	0	0	1434	738	26	4	2631	4	BICD1	12	32491750	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	7093466	32491750	101360145	319	122902											
LRRK2	120892	broad.mit.edu	37	chr12	40758866	40758866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctaggcaagtttctttcCtttagatatttttcatattc	5	8	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40758866	A	A	40758866	1	1	141	0	1	0	0	0	0	0	0	0	9120	696	24	2		2	LRRK2	12	40758866	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	8267116	40758866	93093029	320	122903											
TMEM117	84216	broad.mit.edu	37	chr12	44693440	44693440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgggacaagctgaatcGgggatttttgcccagtgatg	14	8	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44693440	T	T	44693440	3	4	141	1	0	0	0	0	1	0	0	0	16154	1116	39	1	704	1	TMEM117	12	44693440	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	3934574	44693440	89158455	321	122904											
MLL2	8085	broad.mit.edu	37	chr12	49434718	49434718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggccttccgggactcccCaaaaggtgggggcgagagca	16	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49434718	A	A	49434718	3	1	141	1	0	0	0	0	1	0	0	0	9714	594	21	2	9874	2	MLL2	12	49434718	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	4741278	49434718	84417177	322	122905											
MLL2	8085	broad.mit.edu	37	chr12	49444704	49444704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcgacaaggatggctccCcagatggggacaacggcagc	16	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49444704	A	A	49444704	3	1	141	1	0	0	0	0	1	0	0	0	9714	623	22	2	14031	2	MLL2	12	49444704	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	9986	49444704	84407191	323	122906											
KRT71	112802	broad.mit.edu	37	chr12	52943755	52943755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagctggggtgactgccagGggtcccttggagggacaagg	18	8	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52943755	T	T	52943755	1	4	141	0	1	0	0	0	0	0	0	0	8555	1247	43	2		2	KRT71	12	52943755	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3499051	52943755	80908140	324	122907											
KRT77	374454	broad.mit.edu	37	chr12	53091363	53091363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcagagcctgcatgccCcgccccccacccttacacac	7	21	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53091363	A	A	53091363	1	1	141	0	1	0	0	0	0	0	0	0	8561	638	22	2		2	KRT77	12	53091363	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	147608	53091363	80760532	325	122908											
TENC1	23371	broad.mit.edu	37	chr12	53453882	53453882	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagggcagagggtatccCagccctggtgcccactcccc	14	15	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53453882	A	A	53453882	2	1	141	1	0	0	0	0	0	0	0	1	15880	581	21	2		2	TENC1	12	53453882	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	362519	53453882	80398013	326	122909											
PPP1R1A	5502	broad.mit.edu	37	chr12	54975735	54975735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggaaataggatgcctGgggccctccccagcctgaac	14	13	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54975735	T	T	54975735	1	4	141	0	1	0	0	0	0	0	0	0	12468	1363	47	2		2	PPP1R1A	12	54975735	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1521853	54975735	78876160	327	122910											
OR6C1	390321	broad.mit.edu	37	chr12	55714360	55714360	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttgtaggtctggcagGggaaaaaagaaagcaactga	12	6	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55714360	T	T	55714360	1	4	141	0	1	0	0	0	0	0	0	0	11284	1247	43	2		2	OR6C1	12	55714360	5'Flank	SNP	G	TCGA-49-4510-01A-01D-1265-08	738625	55714360	78137535	328	122911											
DNAJC14	85406	broad.mit.edu	37	chr12	56222359	56222359	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtatttcagggtccacGgagggtcctaaagtcctgag	14	8	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56222359	T	T	56222359	2	4	141	1	0	0	0	0	0	0	0	1	4673	1103	39	1		1	DNAJC14	12	56222359	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	507999	56222359	77629536	329	122912											
GEFT	115557	broad.mit.edu	37	chr12	58008066	58008066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggagtgggcgaggtggGggttgtgaaatgtatttgac	20	3	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58008066	T	T	58008066	1	4	141	0	1	0	0	0	0	0	0	0	6392	1247	43	2		2	GEFT	12	58008066	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1785707	58008066	75843829	330	122913											
SRGAP1	57522	broad.mit.edu	37	chr12	64238719	64238719	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccttcttgtcattgtgctCgtggagttgcgtatctaact	10	9	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64238719	A	A	64238719	1	1	141	0	1	0	0	0	0	0	0	0	15263	899	31	3		3	SRGAP1	12	64238719	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	6230653	64238719	69613176	331	122914											
XPOT	11260	broad.mit.edu	37	chr12	64823782	64823782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttttctcattaaatgaaGggaactcaaaaaataaaagc	5	6	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64823782	T	T	64823782	1	4	141	0	1	0	0	0	0	0	0	0	17577	1015	35	2		2	XPOT	12	64823782	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	585063	64823782	69028113	332	122915											
XPOT	11260	broad.mit.edu	37	chr12	64827499	64827499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaagtttgctatcccatGggaagacagtttattgtttt	9	5	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64827499	T	T	64827499	1	4	141	0	1	0	0	0	0	0	0	0	17577	1363	47	2		2	XPOT	12	64827499	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3717	64827499	69024396	333	122916											
GNS	2799	broad.mit.edu	37	chr12	65113804	65113804	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaaaggaaacttacccGgggtcaaaaacccctggagt	11	9	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65113804	T	T	65113804	2	4	141	1	0	0	0	0	0	0	0	1	6614	1103	39	1		1	GNS	12	65113804	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	286305	65113804	68738091	334	122917											
WIF1	11197	broad.mit.edu	37	chr12	65471466	65471466	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaggacatttgcatcttaAatattcttatcatcattaca	4	7	4	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65471466	G	G	65471466	1	3	141	0	1	0	0	0	0	0	0	0	17493	29	1	5		5	WIF1	12	65471466	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	357662	65471466	68380429	335	122918											
RAP1B	5908	broad.mit.edu	37	chr12	69020554	69020555	+	Intron	INS	-	T	T													tatcagaattttccagggtgINSttttttttttgttgtttgtt					rs77399444		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69020555	T	T	69020554	6	5	141	0	1	1	1	0	0	0	0	0	13144	1392	48	0		0	RAP1B	12	69020554	Intron	INS	-	TCGA-49-4510-01A-01D-1265-08	3549088	69020554	64831341	336	122919											
OSBPL8	114882	broad.mit.edu	37	chr12	76844911	76844911	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaatactttaataaattctCacagtcatcttgttttcatg	3	8	5	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76844911	A	A	76844911	1	1	141	0	1	0	0	0	0	0	0	0	11377	841	29	3		3	OSBPL8	12	76844911	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	7824357	76844911	57006984	337	122920											
PLXNC1	10154	broad.mit.edu	37	chr12	94563044	94563044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggactgttttattcttggGgactggagatggccagttac	13	7	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94563044	T	T	94563044	3	4	141	1	0	0	0	0	1	0	0	0	12221	1232	43	2	1184	2	PLXNC1	12	94563044	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	17718133	94563044	39288851	338	122921											
HSP90B1	7184	broad.mit.edu	37	chr12	104337632	104337632	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcacaagcgtaccaaacGggcaaggacatctctacaaa	8	11	1	0	rs142832694		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104337632	T	T	104337632	2	4	141	1	0	0	0	0	0	0	0	1	7472	1103	39	1		1	HSP90B1	12	104337632	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	9774588	104337632	29514263	339	122922											
HPD	3242	broad.mit.edu	37	chr12	122292685	122292685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcatgattttggcgcccCgttcccgtgctttctgcaga	10	15	1	2	rs11833399	byFrequency;by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122292685	A	A	122292685	3	1	141	1	0	0	0	0	1	0	0	0	7399	652	23	1	875	1	HPD	12	122292685	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	17955053	122292685	11559210	340	122923											
DNAH10	196385	broad.mit.edu	37	chr12	124416362	124416362	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcaacaagcttgtggtcCggatgacgaagtctctggct	12	10	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124416362	A	A	124416362	2	1	141	1	0	0	0	0	0	0	0	1	4638	643	23	1		1	DNAH10	12	124416362	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	2123677	124416362	9435533	341	122924											
NUPL1	9818	broad.mit.edu	37	chr13	25899064	25899064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatattttttttcgtacGgtatttttaacataactctt	4	6	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25899064	T	T	25899064	1	4	141	0	1	0	0	0	0	0	0	0	10869	1131	39	1		1	NUPL1	13	25899064	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		25899064	89270814	342	122925											
FLT1	2321	broad.mit.edu	37	chr13	29008406	29008406	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctattagcactggttgGcaatactgtttcaccagcag	10	10	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29008406	A	A	29008406	1	1	141	0	1	0	0	0	0	0	0	0	5999	1218	42	4		4	FLT1	13	29008406	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3109342	29008406	86161472	343	122926											
KDELC1	79070	broad.mit.edu	37	chr13	103450879	103450879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgaatatagaaatagcGggcgggaaggacgacgtctg	15	7	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103450879	T	T	103450879	3	4	141	1	0	0	0	0	1	0	0	0	8187	1116	39	1	1406	1	KDELC1	13	103450879	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	74442473	103450879	11718999	344	122927											
LIG4	3981	broad.mit.edu	37	chr13	108862316	108862316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttgtagatggatagaGgttgttttaccataattccc	10	7	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108862316	T	T	108862316	3	4	141	1	0	0	0	0	1	0	0	0	8855	1000	35	2	1438	2	LIG4	13	108862316	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	5411437	108862316	6307562	345	122928											
FAM70B	348013	broad.mit.edu	37	chr13	114504827	114504827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctgctcactgggagccGgggctccgggtccatttccc	13	17	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114504827	T	T	114504827	1	4	141	0	1	0	0	0	0	0	0	0	5657	1131	39	1		1	FAM70B	13	114504827	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	5642511	114504827	665051	346	122929											
SLC39A2	29986	broad.mit.edu	37	chr14	21469801	21469801	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatccccagggagacctcCcaaatggctttgaccctcag	8	15	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21469801	A	A	21469801	1	1	141	0	1	0	0	0	0	0	0	0	14732	638	22	2		2	SLC39A2	14	21469801	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08		21469801	85879739	347	122930											
SLC7A7	9056	broad.mit.edu	37	chr14	23244555	23244555	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaatagtttttctattggaAtctttcagagctttcaggaa	7	7	4	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23244555	T	T	23244555	1	4	141	0	1	0	0	0	0	0	0	0	14817	116	4	5		5	SLC7A7	14	23244555	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	1774754	23244555	84104985	348	122931											
LRP10	26020	broad.mit.edu	37	chr14	23344723	23344723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccccaagacccgtcccctCcctgccttgcaatgtcacct	6	20	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23344723	A	A	23344723	3	1	141	1	0	0	0	0	1	0	0	0	9039	855	30	3	584	3	LRP10	14	23344723	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	100168	23344723	84004817	349	122932											
MIPOL1	145282	broad.mit.edu	37	chr14	38016134	38016134	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaggctggtggatgtactGaggaagaaggttggaaccgg	18	4	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38016134	T	T	38016134	2	4	141	1	0	0	0	0	0	0	0	1	9686	1277	45	3		3	MIPOL1	14	38016134	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	14671411	38016134	69333406	350	122933											
KCNH5	27133	broad.mit.edu	37	chr14	63246447	63246447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagacccagagaacataccCgtttcctcagattgcaagta	8	12	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63246447	A	A	63246447	3	1	141	1	0	0	0	0	1	0	0	0	8105	666	23	1	990	1	KCNH5	14	63246447	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	25230313	63246447	44103093	351	122934											
SYNE2	23224	broad.mit.edu	37	chr14	64655240	64655240	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttccttcctggctatactCagctgccaaatgtattttca	5	12	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64655240	T	T	64655240	1	4	141	0	1	0	0	0	0	0	0	0	15565	841	29	4		4	SYNE2	14	64655240	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1408793	64655240	42694300	352	122935											
ABCD4	5826	broad.mit.edu	37	chr14	74763003	74763003	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgactgagggccctctgggGaaacaccaggctggggagga	17	10	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74763003	A	A	74763003	1	1	141	0	1	0	0	0	0	0	0	0	63	1189	41	4		4	ABCD4	14	74763003	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	10107763	74763003	32586537	353	122936											
RPS6KA5	9252	broad.mit.edu	37	chr14	91365831	91365831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttatatcagtactgcccCaagactaattttgtcttatt	4	8	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91365831	A	A	91365831	1	1	141	0	1	0	0	0	0	0	0	0	13765	609	21	2		2	RPS6KA5	14	91365831	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	16602828	91365831	15983709	354	122937											
TC2N	123036	broad.mit.edu	37	chr14	92268648	92268648	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggaggaaagcgtcgactcAaatcaggtgaaatgtgctga	15	6	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92268648	T	T	92268648	4	4	141	1	0	0	0	0	0	1	0	0	15787	131	5	5	1089	5	TC2N	14	92268648	Nonsense_Mutation	SNP	A	TCGA-49-4510-01A-01D-1265-08	902817	92268648	15080892	355	122938											
INF2	64423	broad.mit.edu	37	chr14	105302371	105302371	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcctgggtccactgcacgGagactctggtgtgggtcttg	16	10	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105302371	T	T	105302371	1	4	141	0	1	0	0	0	0	0	0	0	7804	1189	41	3		3	INF2	14	105302371	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	13033723	105302371	2047169	356	122939											
ATP10A	57194	broad.mit.edu	37	chr15	25953269	25953269	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctatgggagatacattgttGagtgctgcaccgggcgctgc	14	10	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25953269	A	A	25953269	1	1	141	0	1	0	0	0	0	0	0	0	1120	1305	45	4		4	ATP10A	15	25953269	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		25953269	76578123	357	122940											
EIF2AK4	440275	broad.mit.edu	37	chr15	40326492	40326492	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accagctagtaaaccctagaGacctgttgttaagtcttatc	7	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40326492	A	A	40326492	1	1	141	0	1	0	0	0	0	0	0	0	5039	957	33	4		4	EIF2AK4	15	40326492	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	14373223	40326492	62204900	358	122941											
PAK6	56924	broad.mit.edu	37	chr15	40564315	40564315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagtttgatctgatacccCgcctgaccctgccagagtcc	8	16	1	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40564315	A	A	40564315	1	1	141	0	1	0	0	0	0	0	0	0	11498	667	23	1		1	PAK6	15	40564315	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	237823	40564315	61967077	359	122942											
CAPN3	825	broad.mit.edu	37	chr15	42702568	42702568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggagtctcctagaccctcCctccaaatccagggggattt	9	15	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42702568	A	A	42702568	1	1	141	0	1	0	0	0	0	0	0	0	2654	638	22	2		2	CAPN3	15	42702568	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	2138253	42702568	59828824	360	122943											
TGM7	116179	broad.mit.edu	37	chr15	43571829	43571829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcacactcacccttccCaaagtccaggttcatccgca	5	18	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43571829	A	A	43571829	3	1	141	1	0	0	0	0	1	0	0	0	15958	594	21	2	476	2	TGM7	15	43571829	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	869261	43571829	58959563	361	122944											
NEDD4	4734	broad.mit.edu	37	chr15	56148463	56148463	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgagtgacagctaagGtagtgagggtaaatatgaca	13	5	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56148463	A	A	56148463	1	1	141	0	1	0	0	0	0	0	0	0	10405	1276	44	4		4	NEDD4	15	56148463	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	12576634	56148463	46382929	362	122945											
RFX7	64864	broad.mit.edu	37	chr15	56387452	56387452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatgtgtcctgtggcattCcttctaattcccaaacagat	6	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56387452	A	A	56387452	3	1	141	1	0	0	0	0	1	0	0	0	13376	855	30	3	1912	3	RFX7	15	56387452	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	238989	56387452	46143940	363	122946											
IGDCC4	57722	broad.mit.edu	37	chr15	65684457	65684457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccctccctccccctcccCccagccctcctcacctagct	2	27	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65684457	A	A	65684457	1	1	141	0	1	0	0	0	0	0	0	0	7639	638	22	2		2	IGDCC4	15	65684457	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	9297005	65684457	36846935	364	122947											
IQCH	64799	broad.mit.edu	37	chr15	67677188	67677188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattttttcctggaaatatGgactgtgacattttgaaatt	7	4	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67677188	T	T	67677188	1	4	141	0	1	0	0	0	0	0	0	0	7881	1363	47	2		2	IQCH	15	67677188	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1992731	67677188	34854204	365	122948											
ETFA	2108	broad.mit.edu	37	chr15	76551319	76551319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgccctgatgccctctgCctgtgagctaacagctattg	9	12	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76551319	A	A	76551319	1	1	141	0	1	0	0	0	0	0	0	0	5311	754	26	3		3	ETFA	15	76551319	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	8874131	76551319	25980073	366	122949											
ARNT2	9915	broad.mit.edu	37	chr15	80872724	80872724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaaccaggtgtgtcctcGggataaatgcattttcctct	9	10	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80872724	T	T	80872724	1	4	141	0	1	0	0	0	0	0	0	0	970	1131	39	1		1	ARNT2	15	80872724	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	4321405	80872724	21658668	367	122950											
IL16	3603	broad.mit.edu	37	chr15	81598993	81598993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgttgtttcccacaactcCatgtcctcttcataggcatg	6	12	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81598993	A	A	81598993	1	1	141	0	1	0	0	0	0	0	0	0	7703	609	21	2		2	IL16	15	81598993	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	726269	81598993	20932399	368	122951											
AGBL1	123624	broad.mit.edu	37	chr15	86800113	86800113	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgacaagagcatggagccCgtcatctctgtggtgcttca	12	10	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86800113	A	A	86800113	2	1	141	1	0	0	0	0	0	0	0	1	375	639	23	1		1	AGBL1	15	86800113	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	5201120	86800113	15731279	369	122952											
TSC2	7249	broad.mit.edu	37	chr16	2132360	2132360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctctcctctgcaggcacGgggcctgtgctctctgctcg	11	17	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2132360	T	T	2132360	1	4	141	0	1	0	0	0	0	0	0	0	16731	1131	39	1		1	TSC2	16	2132360	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		2132360	88222393	370	122953											
CASKIN1	57524	broad.mit.edu	37	chr16	2231838	2231838	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcctcccaggtgatgtcGgtgatgaaatcaatgttctc	11	9	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2231838	T	T	2231838	2	4	141	1	0	0	0	0	0	0	0	1	2692	1103	39	1		1	CASKIN1	16	2231838	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	99478	2231838	88122915	371	122954											
SRRM2	23524	broad.mit.edu	37	chr16	2817170	2817170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtcccaggttccagcccCggtgcctctcatgagtctca	9	15	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2817170	A	A	2817170	3	1	141	1	0	0	0	0	1	0	0	0	15287	652	23	1	6679	1	SRRM2	16	2817170	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	585332	2817170	87537583	372	122955											
BTBD12	84464	broad.mit.edu	37	chr16	3639148	3639148	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggcctgctattccccagGgagcccgcgcccgaggactt	12	17	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3639148	T	T	3639148	2	4	141	1	0	0	0	0	0	0	0	1	1549	1219	43	2		2	BTBD12	16	3639148	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	821978	3639148	86715605	373	122956											
ROGDI	79641	broad.mit.edu	37	chr16	4847876	4847876	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtccctgaggagggtccCggccctccaggtgtggaggg	19	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4847876	A	A	4847876	1	1	141	0	1	0	0	0	0	0	0	0	13631	667	23	1		1	ROGDI	16	4847876	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1208728	4847876	85506877	374	122957											
SEC14L5	9717	broad.mit.edu	37	chr16	5053343	5053343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcatcccctgtggggagGgtgttggtggccttgggagg	19	7	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5053343	T	T	5053343	1	4	141	0	1	0	0	0	0	0	0	0	14098	1247	43	2		2	SEC14L5	16	5053343	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	205467	5053343	85301410	375	122958											
EMP2	2013	broad.mit.edu	37	chr16	10637349	10637349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagagggtacggagtcGgggaacccgaagcctcactc	17	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10637349	T	T	10637349	1	4	141	0	1	0	0	0	0	0	0	0	5144	1131	39	1		1	EMP2	16	10637349	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	5584006	10637349	79717404	376	122959											
PDXDC1	23042	broad.mit.edu	37	chr16	15126763	15126763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtttgaaatcagatccCgaaggggaaaacatccatgc	10	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15126763	A	A	15126763	2	1	141	1	0	0	0	0	0	0	0	1	11790	639	23	1		1	PDXDC1	16	15126763	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	4489414	15126763	75227990	377	122960											
MYH11	4629	broad.mit.edu	37	chr16	15854360	15854360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaatggatggatgggtGggtgcatggatggataagtg	20	1	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15854360	T	T	15854360	1	4	141	0	1	0	0	0	0	0	0	0	10125	1363	47	2		2	MYH11	16	15854360	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	727597	15854360	74500393	378	122961											
GDE1	51573	broad.mit.edu	37	chr16	19533016	19533016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccgaggggcgcgaacgtgGgggtctcacctgccgaatgg	18	11	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19533016	T	T	19533016	1	4	141	0	1	0	0	0	0	0	0	0	6373	1247	43	2		2	GDE1	16	19533016	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3678656	19533016	70821737	379	122962											
GGA2	23062	broad.mit.edu	37	chr16	23481210	23481213	+	Intron	DEL	GTTT	-	-													tcccactttatcttcagttaGtttgagtgaagattctttcc							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23481213	-	-	23481210	6	5	141	0	1	1	0	1	0	0	0	0	6417	1044	36	0		0	GGA2	16	23481210	Intron	DEL	GTTT	TCGA-49-4510-01A-01D-1265-08	3948194	23481210	66873543	380	122963											
ERN2	10595	broad.mit.edu	37	chr16	23713904	23713904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagggaggttcttctccCgttcatcctctttccagccc	9	14	4	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23713904	A	A	23713904	1	1	141	0	1	0	0	0	0	0	0	0	5280	667	23	1		1	ERN2	16	23713904	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	232694	23713904	66640849	381	122964											
IL21R	50615	broad.mit.edu	37	chr16	27456083	27456083	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccccactcctggtatcaaAttttgtcctgttctagccac	5	15	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27456083	G	G	27456083	1	3	141	0	1	0	0	0	0	0	0	0	7741	116	4	5		5	IL21R	16	27456083	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	3742179	27456083	62898670	382	122965											
GTF3C1	2975	broad.mit.edu	37	chr16	27499802	27499802	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggccaggaagaccaaaccGaacatagggtagtcgtttag	12	8	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27499802	A	A	27499802	1	1	141	0	1	0	0	0	0	0	0	0	6937	1073	37	4		4	GTF3C1	16	27499802	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	43719	27499802	62854951	383	122966											
VPS35	55737	broad.mit.edu	37	chr16	46715497	46715497	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtcattactaactacTgggcagacatcttaagtttt	8	7	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46715497	A	A	46715497	1	1	141	0	1	0	0	0	0	0	0	0	17330	1595	55	5		5	VPS35	16	46715497	Intron	SNP	T	TCGA-49-4510-01A-01D-1265-08	19215695	46715497	43639256	384	122967											
BBS2	583	broad.mit.edu	37	chr16	56545113	56545113	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgattgaaaccttgcagAgcacaattgccaccaataat	6	10	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56545113	G	G	56545113	2	3	141	1	0	0	0	0	0	0	0	1	1343	291	11	5		5	BBS2	16	56545113	Silent	SNP	A	TCGA-49-4510-01A-01D-1265-08	9829616	56545113	33809640	385	122968											
DOK4	55715	broad.mit.edu	37	chr16	57507802	57507802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtaccctggactgatgccCgctgcctcaccctcacgttc	8	19	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57507802	A	A	57507802	1	1	141	0	1	0	0	0	0	0	0	0	4739	667	23	1		1	DOK4	16	57507802	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	962689	57507802	32846951	386	122969											
CMTM2	146225	broad.mit.edu	37	chr16	66613979	66613979	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcactcaccgtgcacccCatcttgaggcttatcatcac	5	17	5	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66613979	A	A	66613979	2	1	141	1	0	0	0	0	0	0	0	1	3615	581	21	2		2	CMTM2	16	66613979	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	9106177	66613979	23740774	387	122970											
CIRH1A	84916	broad.mit.edu	37	chr16	69189674	69189674	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattatgtgtagatatctgtGggtatgtccagagtggcaag	14	4	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69189674	T	T	69189674	1	4	141	0	1	0	0	0	0	0	0	0	3465	1363	47	2		2	CIRH1A	16	69189674	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	2575695	69189674	21165079	388	122971											
WWOX	51741	broad.mit.edu	37	chr16	78466672	78466672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaacagcttctggcgcCgcaaacaccttgggtcctag	11	12	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78466672	A	A	78466672	1	1	141	0	1	0	0	0	0	0	0	0	17541	667	23	1		1	WWOX	16	78466672	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	9276998	78466672	11888081	389	122972											
COTL1	23406	broad.mit.edu	37	chr16	84623830	84623830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttgctcatggcatcccCggtggtgaagcgcacgaagg	13	13	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84623830	A	A	84623830	3	1	141	1	0	0	0	0	1	0	0	0	3793	652	23	1	237	1	COTL1	16	84623830	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	6157158	84623830	5730923	390	122973											
ZC3H18	124245	broad.mit.edu	37	chr16	88664679	88664679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaagccgaccccttccCgcctaatggtgccccgcctc	7	21	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88664679	A	A	88664679	3	1	141	1	0	0	0	0	1	0	0	0	17694	652	23	1	792	1	ZC3H18	16	88664679	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	4040849	88664679	1690074	391	122974											
SLC25A11	8402	broad.mit.edu	37	chr17	4841663	4841663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaagaactgcttggattggGagtaggaggcgagctgggca	18	5	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4841663	T	T	4841663	3	4	141	1	0	0	0	0	1	0	0	0	14587	1174	41	3	352	3	SLC25A11	17	4841663	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08		4841663	76353547	392	122975											
PER1	5187	broad.mit.edu	37	chr17	8049656	8049656	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggccaccaggccaggacGgggcagtgggagcagggtgc	20	11	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8049656	T	T	8049656	1	4	141	0	1	0	0	0	0	0	0	0	11823	1131	39	1		1	PER1	17	8049656	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	3207993	8049656	73145554	393	122976											
GLP2R	9340	broad.mit.edu	37	chr17	9739614	9739614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaaggtgggctcccacGgtgcctctgcctccatcagt	12	15	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9739614	T	T	9739614	1	4	141	0	1	0	0	0	0	0	0	0	6517	1131	39	1		1	GLP2R	17	9739614	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1689958	9739614	71455596	394	122977											
MYH1	4619	broad.mit.edu	37	chr17	10412919	10412919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatgtggtggttgaaaaaCtgttgcagtttctcattggt	11	5	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10412919	A	A	10412919	3	1	141	1	0	0	0	0	1	0	0	0	10123	564	20	3	4453	3	MYH1	17	10412919	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	673305	10412919	70782291	395	122978											
DNAH9	1770	broad.mit.edu	37	chr17	11622639	11622639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatgacctatgccctccCgtgtttggcaggtgctacat	10	11	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11622639	A	A	11622639	1	1	141	0	1	0	0	0	0	0	0	0	4648	667	23	1		1	DNAH9	17	11622639	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1209720	11622639	69572571	396	122979											
KIAA0100	9703	broad.mit.edu	37	chr17	26965337	26965337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgggtgggtgtggcgccCgctgaatgtgggagtcactg	18	7	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26965337	A	A	26965337	3	1	141	1	0	0	0	0	1	0	0	0	8224	652	23	1	5370	1	KIAA0100	17	26965337	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	15342698	26965337	54229873	397	122980											
ATAD5	79915	broad.mit.edu	37	chr17	29220228	29220228	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtactttgaatttagaataGggataacactatattcatac	6	5	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29220228	T	T	29220228	1	4	141	0	1	0	0	0	0	0	0	0	1080	1015	35	2		2	ATAD5	17	29220228	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	2254891	29220228	51974982	398	122981											
ACACA	31	broad.mit.edu	37	chr17	35578619	35578619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatacctctggctggctcGggtgcacataccacctcaaa	10	13	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35578619	T	T	35578619	1	4	141	0	1	0	0	0	0	0	0	0	106	1131	39	1		1	ACACA	17	35578619	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	6358391	35578619	45616591	399	122982											
HNF1B	6928	broad.mit.edu	37	chr17	36070500	36070500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagagcgacaatggcccaGgtgtactcaccattttacca	8	13	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36070500	T	T	36070500	1	4	141	0	1	0	0	0	0	0	0	0	7319	1015	35	2		2	HNF1B	17	36070500	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	491881	36070500	45124710	400	122983											
MLLT6	4302	broad.mit.edu	37	chr17	36868109	36868109	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccgcagaagacatccCggcacagcagcgggggaggc	14	15	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36868109	A	A	36868109	2	1	141	1	0	0	0	0	0	0	0	1	9723	643	23	1		1	MLLT6	17	36868109	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	797609	36868109	44327101	401	122984											
MED1	5469	broad.mit.edu	37	chr17	37604236	37604236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttgcaaaataaattccCacacttcatcacagtaagaa	3	11	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37604236	A	A	37604236	1	1	141	0	1	0	0	0	0	0	0	0	9518	609	21	2		2	MED1	17	37604236	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	736127	37604236	43590974	402	122985											
MPP3	4356	broad.mit.edu	37	chr17	41907165	41907165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccatgagcacagcctgccGggaaagccagagaaaaggaa	12	10	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41907165	T	T	41907165	1	4	141	0	1	0	0	0	0	0	0	0	9829	1131	39	1		1	MPP3	17	41907165	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	4302929	41907165	39288045	403	122986											
MAPT	4137	broad.mit.edu	37	chr17	44074064	44074064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgcgtggaggtgtgggGggctgcgcctggaggggtag	24	7	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44074064	T	T	44074064	1	4	141	0	1	0	0	0	0	0	0	0	9389	1247	43	2		2	MAPT	17	44074064	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	2166899	44074064	37121146	404	122987											
KIAA1267	284058	broad.mit.edu	37	chr17	44248904	44248904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaattggtcatacccccCttcaagtccccagattcaga	7	14	3	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44248904	A	A	44248904	3	1	141	1	0	0	0	0	1	0	0	0	8289	680	24	2	2767	2	KIAA1267	17	44248904	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	174840	44248904	36946306	405	122988											
UTP18	51096	broad.mit.edu	37	chr17	49362861	49362861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatatgaaattggtcaaccCagctgagcttttttcatttt	6	7	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49362861	A	A	49362861	1	1	141	0	1	0	0	0	0	0	0	0	17225	609	21	2		2	UTP18	17	49362861	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	5113957	49362861	31832349	406	122989											
SCPEP1	59342	broad.mit.edu	37	chr17	55078438	55078438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggacatgtcagtcttgcGgtgggtgatgttgaaatgcc	14	7	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55078438	T	T	55078438	1	4	141	0	1	0	0	0	0	0	0	0	14048	1131	39	1		1	SCPEP1	17	55078438	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	5715577	55078438	26116772	407	122990											
MSI2	124540	broad.mit.edu	37	chr17	55693288	55693288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcatttgacatttacgtGgaattcatttgcatctcatt	6	8	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55693288	T	T	55693288	1	4	141	0	1	0	0	0	0	0	0	0	9970	1363	47	2		2	MSI2	17	55693288	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	614850	55693288	25501922	408	122991											
CSHL1	1444	broad.mit.edu	37	chr17	61988387	61988387	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctccatccctccagGgaccaggaacattcagagat	7	15	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61988387	A	A	61988387	1	1	141	0	1	0	0	0	0	0	0	0	3976	1247	43	4		4	CSHL1	17	61988387	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	6295099	61988387	19206823	409	122992											
SCN4A	6329	broad.mit.edu	37	chr17	62018077	62018077	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgtgtgcaggcaccacGggggagctctggggactatg	16	10	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62018077	T	T	62018077	1	4	141	0	1	0	0	0	0	0	0	0	14033	1131	39	1		1	SCN4A	17	62018077	3'UTR	SNP	G	TCGA-49-4510-01A-01D-1265-08	29690	62018077	19177133	410	122993											
POLG2	11232	broad.mit.edu	37	chr17	62492667	62492667	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctgaaggcactgtccccGggtagcaaagggcctggttt	13	11	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62492667	T	T	62492667	2	4	141	1	0	0	0	0	0	0	0	1	12296	1103	39	1		1	POLG2	17	62492667	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	474590	62492667	18702543	411	122994											
ATP5H	10476	broad.mit.edu	37	chr17	73038614	73038614	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggggttccctctcagaaAcatactgacctggaggtgag	12	9	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73038614	T	T	73038614	1	4	141	0	1	0	0	0	0	0	0	0	1160	58	2	5		5	ATP5H	17	73038614	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	10545947	73038614	8156596	412	122995											
GGA3	23163	broad.mit.edu	37	chr17	73234574	73234574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaatggtcccttttcccCgcaacccccaaccatgctca	7	17	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73234574	A	A	73234574	1	1	141	0	1	0	0	0	0	0	0	0	6418	667	23	1		1	GGA3	17	73234574	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	195960	73234574	7960636	413	122996											
RECQL5	9400	broad.mit.edu	37	chr17	73658967	73658967	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacagaatcttggtctgGggcttttctcgctccaggtc	11	10	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73658967	T	T	73658967	2	4	141	1	0	0	0	0	0	0	0	1	13311	1219	43	2		2	RECQL5	17	73658967	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	424393	73658967	7536243	414	122997											
AFMID	125061	broad.mit.edu	37	chr17	76203055	76203055	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctggtccacgtgcatccCaccttgggaagcctctccaa	9	16	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76203055	A	A	76203055	1	1	141	0	1	0	0	0	0	0	0	0	362	609	21	2		2	AFMID	17	76203055	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	2544088	76203055	4992155	415	122998											
UTS2R	2837	broad.mit.edu	37	chr17	80332555	80332555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccaaggagtggcacttcGgggacgtgggctgccgcgtg	17	11	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80332555	T	T	80332555	3	4	141	1	0	0	0	0	1	0	0	0	17233	1116	39	1	357	1	UTS2R	17	80332555	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	4129500	80332555	862655	416	122999											
C17orf101	79701	broad.mit.edu	37	chr17	80356141	80356141	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgccctccgccgaagtcctCcaggtagttggagaggtaca	12	14	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80356141	A	A	80356141	4	1	141	1	0	0	0	0	0	1	0	0	1862	864	30	3	390	3	C17orf101	17	80356141	Nonsense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	23586	80356141	839069	417	123000											
OSBPL1A	114876	broad.mit.edu	37	chr18	21758030	21758030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcttctacactcttcccCcagaatttcagtttgggata	6	12	4	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21758030	A	A	21758030	3	1	141	1	0	0	0	0	1	0	0	0	11371	624	22	2	844	2	OSBPL1A	18	21758030	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08		21758030	56319218	418	123001											
MYO5B	4645	broad.mit.edu	37	chr18	47581623	47581623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccccgcccccctgcccCggactcactcttaccgtttc	5	23	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47581623	A	A	47581623	1	1	141	0	1	0	0	0	0	0	0	0	10173	667	23	1		1	MYO5B	18	47581623	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	25823593	47581623	30495625	419	123002											
C18orf54	162681	broad.mit.edu	37	chr18	51892104	51892104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagcaaatctcctgttccCgttaactctgatgatagtcc	6	11	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51892104	A	A	51892104	2	1	141	1	0	0	0	0	0	0	0	1	1922	639	23	1		1	C18orf54	18	51892104	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	4310481	51892104	26185144	420	123003											
ATP8B1	5205	broad.mit.edu	37	chr18	55342226	55342226	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaccagggcaccttcatcGggagaggctgcctggtagtt	13	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55342226	T	T	55342226	2	4	141	1	0	0	0	0	0	0	0	1	1198	1103	39	1		1	ATP8B1	18	55342226	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	3450122	55342226	22735022	421	123004											
ALPK2	115701	broad.mit.edu	37	chr18	56202593	56202593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggagatgaagtacaaGggaacctggtaagatcagga	13	6	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56202593	T	T	56202593	3	4	141	1	0	0	0	0	1	0	0	0	545	1000	35	2	1722	2	ALPK2	18	56202593	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	860367	56202593	21874655	422	123005											
GRP	2922	broad.mit.edu	37	chr18	56892701	56892706	+	Intron	DEL	TGTTTT	-	-													taaatttgtggcattctgagTgtttttgtttttgtttttac							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56892706	-	-	56892701	6	5	141	0	1	1	0	1	0	0	0	0	6871	1711	59	0		0	GRP	18	56892701	Intron	DEL	TGTTTT	TCGA-49-4510-01A-01D-1265-08	690108	56892701	21184547	423	123006											
SERPINB8	5271	broad.mit.edu	37	chr18	61654575	61654575	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgccttaattaacattcCctgtgacctagttggtgcag	8	10	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61654575	A	A	61654575	1	1	141	0	1	0	0	0	0	0	0	0	14220	638	22	2		2	SERPINB8	18	61654575	3'UTR	SNP	C	TCGA-49-4510-01A-01D-1265-08	4761874	61654575	16422673	424	123007											
CCDC151	115948	broad.mit.edu	37	chr19	11537169	11537169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagatagatgggggcgGgggcgtaggggaagctcagg	23	5	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11537169	T	T	11537169	1	4	141	0	1	0	0	0	0	0	0	0	2812	1247	43	2		2	CCDC151	19	11537169	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		11537169	47591814	425	123008											
EMR2	30817	broad.mit.edu	37	chr19	14884715	14884715	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggctatgcctcataatcgCagatgtcccctgcgctgccc	10	15	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14884715	T	T	14884715	1	4	141	0	1	0	0	0	0	0	0	0	5147	725	25	4		4	EMR2	19	14884715	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	3347546	14884715	44244268	426	123009											
NOTCH3	4854	broad.mit.edu	37	chr19	15300124	15300124	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtcacatgccccaccCgtgaagccgggaggacaggt	13	14	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15300124	A	A	15300124	2	1	141	1	0	0	0	0	0	0	0	1	10645	639	23	1		1	NOTCH3	19	15300124	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	415409	15300124	43828859	427	123010											
ISYNA1	51477	broad.mit.edu	37	chr19	18546587	18546587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggtcaggctcttcgcCgggcgtatagagcactgggt	16	10	2	1	rs150073676		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18546587	A	A	18546587	3	1	141	1	0	0	0	0	1	0	0	0	7937	652	23	1	572	1	ISYNA1	19	18546587	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	3246463	18546587	40582396	428	123011											
CRTC1	23373	broad.mit.edu	37	chr19	18888034	18888034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgaccagctctctggccGgggtcggcgacgtcagcttc	13	14	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18888034	T	T	18888034	3	4	141	1	0	0	0	0	1	0	0	0	3931	1116	39	1	1853	1	CRTC1	19	18888034	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	341447	18888034	40240949	429	123012											
SLC25A42	284439	broad.mit.edu	37	chr19	19218621	19218621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaggcccagccggcttcGggaggagccgagagcctctg	15	15	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19218621	T	T	19218621	1	4	141	0	1	0	0	0	0	0	0	0	14621	1131	39	1		1	SLC25A42	19	19218621	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	330587	19218621	39910362	430	123013											
ZNF536	9745	broad.mit.edu	37	chr19	30934652	30934652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccccgaggagaagcccccCgcatccctggaggagaaggc	13	15	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30934652	A	A	30934652	2	1	141	1	0	0	0	0	0	0	0	1	18101	639	23	1		1	ZNF536	19	30934652	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	11716031	30934652	28194331	431	123014											
ZNF536	9745	broad.mit.edu	37	chr19	31039063	31039063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggccttcaagggtctccCtggaatcgacttcagaggag	15	10	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039063	A	A	31039063	3	1	141	1	0	0	0	0	1	0	0	0	18101	681	24	2	2547	2	ZNF536	19	31039063	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	104411	31039063	28089920	432	123015											
RYR1	6261	broad.mit.edu	37	chr19	38938970	38938971	+	Intron	INS	-	C	C													aactggggggtcctctgactINSccccttggctctcaccctcc							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38938971	C	C	38938970	6	5	141	0	1	1	1	0	0	0	0	0	13879	1566	54	0		0	RYR1	19	38938970	Intron	INS	-	TCGA-49-4510-01A-01D-1265-08	7899907	38938970	20190013	433	123016											
PSMC4	5704	broad.mit.edu	37	chr19	40480512	40480512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggaggccgtggagctccCgctcacgcatttcgagctct	14	14	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40480512	A	A	40480512	3	1	141	1	0	0	0	0	1	0	0	0	12795	652	23	1	569	1	PSMC4	19	40480512	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	1541542	40480512	18648471	434	123017											
AXL	558	broad.mit.edu	37	chr19	41754461	41754461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctgaaggagaagctgcGggatgtgatggtggaccggc	19	6	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41754461	T	T	41754461	3	4	141	1	0	0	0	0	1	0	0	0	1243	1116	39	1	1630	1	AXL	19	41754461	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1273949	41754461	17374522	435	123018											
MEGF8	1954	broad.mit.edu	37	chr19	42865204	42865204	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggggagtggagccctctaAtgggggtcctgtgctaggcc	18	9	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42865204	T	T	42865204	1	4	141	0	1	0	0	0	0	0	0	0	9556	116	4	5		5	MEGF8	19	42865204	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	1110743	42865204	16263779	436	123019											
PSG5	5673	broad.mit.edu	37	chr19	43689346	43689346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattgagacctgtgtattgGggtgaaaagatggagccctg	14	5	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43689346	T	T	43689346	1	4	141	0	1	0	0	0	0	0	0	0	12764	1247	43	2		2	PSG5	19	43689346	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	824142	43689346	15439637	437	123020											
ZFP112	7771	broad.mit.edu	37	chr19	44847409	44847409	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgaaaaccagctcacctgGaatttggtcatttttctctt	6	9	3	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44847409	A	A	44847409	2	1	141	1	0	0	0	0	0	0	0	1	17764	1165	41	4		4	ZFP112	19	44847409	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	1158063	44847409	14281574	438	123021											
SIX5	147912	broad.mit.edu	37	chr19	46270467	46270467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcctgtggggcctcccgCatagccagccagctgctccc	11	17	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46270467	A	A	46270467	1	1	141	0	1	0	0	0	0	0	0	0	14463	725	25	3		3	SIX5	19	46270467	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1423058	46270467	12858516	439	123022											
SLC1A5	6510	broad.mit.edu	37	chr19	47285606	47285606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaccgaccctccaaccCcacccacccccagcctcctc	4	25	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47285606	A	A	47285606	1	1	141	0	1	0	0	0	0	0	0	0	14548	638	22	2		2	SLC1A5	19	47285606	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1015139	47285606	11843377	440	123023											
CYTH2	9266	broad.mit.edu	37	chr19	48976495	48976495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttccccagggcattgccCtttgcccattcctgccccat	7	18	0	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48976495	T	T	48976495	1	4	141	0	1	0	0	0	0	0	0	0	4237	696	24	4		4	CYTH2	19	48976495	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	1690889	48976495	10152488	441	123024											
NAPSA	9476	broad.mit.edu	37	chr19	50868717	50868717	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccaagtttggggatcactGaactgggagtcctagactta	12	8	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50868717	A	A	50868717	1	1	141	0	1	0	0	0	0	0	0	0	10260	1305	45	4		4	NAPSA	19	50868717	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1892222	50868717	8260266	442	123025											
ZNF480	147657	broad.mit.edu	37	chr19	52817559	52817559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatgcccctgcagaagccGggatctgcccttggttattt	10	12	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52817559	T	T	52817559	1	4	141	0	1	0	0	0	0	0	0	0	18062	1131	39	1		1	ZNF480	19	52817559	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1948842	52817559	6311424	443	123026											
ZNF347	84671	broad.mit.edu	37	chr19	53644247	53644247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcgctgatgccttgaaaGgtatgaattatgcctaaaga	9	6	0	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53644247	T	T	53644247	3	4	141	1	0	0	0	0	1	0	0	0	17987	1000	35	2	689	2	ZNF347	19	53644247	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	826688	53644247	5484736	444	123027											
ZNF665	79788	broad.mit.edu	37	chr19	53678702	53678702	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagtcatcctcacccagGgagaccaggttcctataatt	8	11	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53678702	T	T	53678702	2	4	141	1	0	0	0	0	0	0	0	1	18200	1219	43	2		2	ZNF665	19	53678702	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	34455	53678702	5450281	445	123028											
ZNF761	388561	broad.mit.edu	37	chr19	53952613	53952613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttagtaaaacacaactGggaagacaaaatgcggtgaa	9	5	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53952613	T	T	53952613	1	4	141	0	1	0	0	0	0	0	0	0	18265	1363	47	2		2	ZNF761	19	53952613	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	273911	53952613	5176370	446	123029											
BRSK1	84446	broad.mit.edu	37	chr19	55805731	55805731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgccgggcagacatgtGgagctgtggagtcatcctct	15	11	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55805731	T	T	55805731	3	4	141	1	0	0	0	0	1	0	0	0	1532	1357	47	2	670	2	BRSK1	19	55805731	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	1853118	55805731	3323252	447	123030											
ZIK1	284307	broad.mit.edu	37	chr19	58096256	58096256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctggacaggaatccagGgaagcctgaatccgtagagc	14	10	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58096256	T	T	58096256	1	4	141	0	1	0	0	0	0	0	0	0	17809	1247	43	2		2	ZIK1	19	58096256	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	2290525	58096256	1032727	448	123031											
ZNF814	730051	broad.mit.edu	37	chr19	58384993	58384993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatggctcctaaggtgccCgattgaactaaaagatttcc	9	10	0	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58384993	A	A	58384993	3	1	141	1	0	0	0	0	1	0	0	0	18305	652	23	1	806	1	ZNF814	19	58384993	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	288737	58384993	743990	449	123032											
VPS16	64601	broad.mit.edu	37	chr20	2843642	2843642	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggcaggggaaggggctggaGatgcgtctgcaggtacctgg	20	7	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2843642	C	C	2843642	1	2	141	0	1	0	0	0	0	0	0	0	17320	957	33	4		4	VPS16	20	2843642	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		2843642	60181878	450	123033											
NAA20	51126	broad.mit.edu	37	chr20	20013806	20013806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcataccattacctcatcCtgtgaggcctgaagacattg	7	12	2	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20013806	A	A	20013806	3	1	141	1	0	0	0	0	1	0	0	0	10214	681	24	2	555	2	NAA20	20	20013806	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	17170164	20013806	43011714	451	123034											
C20orf26	26074	broad.mit.edu	37	chr20	20208833	20208833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacatagttgcaaatttgaGggtatgaacactgctacgtt	9	7	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20208833	T	T	20208833	1	4	141	0	1	0	0	0	0	0	0	0	2128	1015	35	2		2	C20orf26	20	20208833	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	195027	20208833	42816687	452	123035											
NINL	22981	broad.mit.edu	37	chr20	25477491	25477491	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accccactgctggcctgaccCgccatgccaggtggctctgg	12	17	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25477491	T	T	25477491	1	4	141	0	1	0	0	0	0	0	0	0	10515	667	23	4		4	NINL	20	25477491	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	5268658	25477491	37548029	453	123036											
MYLK2	85366	broad.mit.edu	37	chr20	30409531	30409531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggaggaggactgcttcCagattttgggtaggccaggg	17	8	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30409531	A	A	30409531	3	1	141	1	0	0	0	0	1	0	0	0	10151	595	21	2	773	2	MYLK2	20	30409531	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	4932040	30409531	32615989	454	123037											
AHCY	191	broad.mit.edu	37	chr20	32878716	32878716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccatctatgagggactccCggcagccatagaggttgtca	12	11	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32878716	A	A	32878716	3	1	141	1	0	0	0	0	1	0	0	0	409	652	23	1	731	1	AHCY	20	32878716	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2469185	32878716	30146804	455	123038											
CPNE1	8904	broad.mit.edu	37	chr20	34214296	34214296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtctgtgccaatgcctccCgaggggcctgccaagaaaag	13	13	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34214296	A	A	34214296	3	1	141	1	0	0	0	0	1	0	0	0	3843	652	23	1	136	1	CPNE1	20	34214296	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	1335580	34214296	28811224	456	123039											
SRC	6714	broad.mit.edu	37	chr20	36014693	36014694	+	Intron	DNP	GA	AG	AG													tgcagagcccagggcagtgcGaagcccagggcagtgtggag							TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	36014694	AG	AG	36014693	1	1	141	0	1	0	0	0	0	0	0	0	15252	1073	37	4		4	SRC	20	36014693	Intron	DNP	GA	TCGA-49-4510-01A-01D-1265-08	1800397	36014693	27010827	457	123040											
BPI	671	broad.mit.edu	37	chr20	36952397	36952397	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttcttcaacacagccggGcttgtataccaagaggctgg	10	11	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36952397	A	A	36952397	2	1	141	1	0	0	0	0	0	0	0	1	1499	1190	42	4		4	BPI	20	36952397	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	937704	36952397	26073123	458	123041											
LBP	3929	broad.mit.edu	37	chr20	37005156	37005156	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatttatgcactgacctggAttctggcagagcttgtgttt	10	8	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37005156	G	G	37005156	1	3	141	0	1	0	0	0	0	0	0	0	8723	348	12	5		5	LBP	20	37005156	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	52759	37005156	26020364	459	123042											
ZHX3	23051	broad.mit.edu	37	chr20	39831017	39831017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagtcctgcaggagctccCggttgccaggggcaatgacc	13	12	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39831017	A	A	39831017	3	1	141	1	0	0	0	0	1	0	0	0	17803	652	23	1	338	1	ZHX3	20	39831017	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	2825861	39831017	23194503	460	123043											
CHD6	84181	broad.mit.edu	37	chr20	40045330	40045330	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcactgctggttaatacCggggtgggcagtgtgcctga	15	10	0	1	rs148956702	byFrequency	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40045330	A	A	40045330	2	1	141	1	0	0	0	0	0	0	0	1	3360	639	23	1		1	CHD6	20	40045330	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	214313	40045330	22980190	461	123044											
SFRS6	6431	broad.mit.edu	37	chr20	42089432	42089432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctaagcccaagtctgatcGgggctcccattcacattctc	7	14	4	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42089432	T	T	42089432	3	4	141	1	0	0	0	0	1	0	0	0	14294	1116	39	1	786	1	SFRS6	20	42089432	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	2044102	42089432	20936088	462	123045											
VAPB	9217	broad.mit.edu	37	chr20	57019084	57019084	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagctgtacagttgactccCctttctggtgccttggcttg	10	11	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57019084	A	A	57019084	1	1	141	0	1	0	0	0	0	0	0	0	17249	638	22	2		2	VAPB	20	57019084	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	14929652	57019084	6006436	463	123046											
GNAS	2778	broad.mit.edu	37	chr20	57428785	57428785	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcctgggaggatacagCcctccaccagaagaagctat	11	13	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57428785	G	G	57428785	3	3	141	1	0	0	0	0	1	0	0	0	6574	739	26	4	1209	4	GNAS	20	57428785	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	409701	57428785	5596735	464	123047											
CDH4	1002	broad.mit.edu	37	chr20	60504711	60504711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcctgtacctggaggccGggatgtatgacgtccccatc	12	13	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60504711	T	T	60504711	3	4	141	1	0	0	0	0	1	0	0	0	3142	1116	39	1	2100	1	CDH4	20	60504711	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	3075926	60504711	2520809	465	123048											
DIDO1	11083	broad.mit.edu	37	chr20	61541216	61541216	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcttcctgctgatctgcCgtttctgaatgagtctcatc	8	11	3	3	rs138828502		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61541216	A	A	61541216	2	1	141	1	0	0	0	0	0	0	0	1	4562	639	23	1		1	DIDO1	20	61541216	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	1036505	61541216	1484304	466	123049											
ZNF512B	57473	broad.mit.edu	37	chr20	62597380	62597380	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttctcaccactgttccccGacctgggacgagcccccata	7	17	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62597380	A	A	62597380	1	1	141	0	1	0	0	0	0	0	0	0	18084	1073	37	4		4	ZNF512B	20	62597380	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1056164	62597380	428140	467	123050											
TMPRSS15	5651	broad.mit.edu	37	chr21	19642327	19642327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattcggtaaaccttgagaCcctggcatacactccggggc	10	14	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19642327	A	A	19642327	3	1	141	1	0	0	0	0	1	0	0	0	16369	507	18	3	44	3	TMPRSS15	21	19642327	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08		19642327	28487568	468	123051											
HLCS	3141	broad.mit.edu	37	chr21	38139454	38139454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacattcaatgggctcctGggccacaagagttgcagagt	11	11	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38139454	T	T	38139454	1	4	141	0	1	0	0	0	0	0	0	0	7280	1363	47	2		2	HLCS	21	38139454	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	18497127	38139454	9990441	469	123052											
TTC3	7267	broad.mit.edu	37	chr21	38573591	38573591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccacactctggcctgagcGggtgttggtgtccctgagta	14	11	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38573591	T	T	38573591	1	4	141	0	1	0	0	0	0	0	0	0	16823	1131	39	1		1	TTC3	21	38573591	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	434137	38573591	9556304	470	123053											
PCNT	5116	broad.mit.edu	37	chr21	47819896	47819896	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagcaagagtactttgacCtttctggagattgttgattt	11	5	1	4			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47819896	T	T	47819896	1	4	141	0	1	0	0	0	0	0	0	0	11684	696	24	4		4	PCNT	21	47819896	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	9246305	47819896	309999	471	123054											
PCNT	5116	broad.mit.edu	37	chr21	47831523	47831523	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgcaatgtagccctcaggGaggctgaggtcgaagacatg	15	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47831523	T	T	47831523	4	4	141	1	0	0	0	0	0	1	0	0	11684	1175	41	3	5646	3	PCNT	21	47831523	Nonsense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	11627	47831523	298372	472	123055											
PIWIL3	440822	broad.mit.edu	37	chr22	25155740	25155740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcccaccaaacctcacGggagtcctgaggctatctag	8	16	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25155740	T	T	25155740	1	4	141	0	1	0	0	0	0	0	0	0	12054	1131	39	1		1	PIWIL3	22	25155740	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08		25155740	26148826	473	123056											
ASCC2	84164	broad.mit.edu	37	chr22	30202271	30202271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagtgcatcatagtccCggaggaacctgcaggcagat	14	9	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30202271	A	A	30202271	3	1	141	1	0	0	0	0	1	0	0	0	1036	652	23	1	1215	1	ASCC2	22	30202271	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	5046531	30202271	21102295	474	123057											
MTMR3	8897	broad.mit.edu	37	chr22	30412733	30412733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcagcagaaggaatttGgggttggttacatatgagag	16	3	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30412733	T	T	30412733	1	4	141	0	1	0	0	0	0	0	0	0	10039	1363	47	2		2	MTMR3	22	30412733	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	210462	30412733	20891833	475	123058											
TOM1	10043	broad.mit.edu	37	chr22	35728923	35728923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgcctggccgtgtgtGggggcctgtctcagtctgtc	15	12	3	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35728923	T	T	35728923	1	4	141	0	1	0	0	0	0	0	0	0	16474	1363	47	2		2	TOM1	22	35728923	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	5316190	35728923	15575643	476	123059											
EFCAB6	64800	broad.mit.edu	37	chr22	43976537	43976537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcatgccggctgactcccCaacttgtcccaaaaggaaga	8	13	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43976537	A	A	43976537	3	1	141	1	0	0	0	0	1	0	0	0	4979	595	21	2	1502	2	EFCAB6	22	43976537	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	8247614	43976537	7328029	477	123060											
TLR7	51284	broad.mit.edu	37	chrX	12904472	12904472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattctcccctacagatccCtgtaaatgcttttgatgcgc	6	12	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12904472	A	A	12904472	3	1	141	1	0	0	0	0	1	0	0	0	16079	681	24	2	851	2	TLR7	23	12904472	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08		12904472	142366088	478	123061											
BMX	660	broad.mit.edu	37	chrX	15560313	15560313	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtcaccaattcatacacCgggacttggtaagcaaagcc	9	11	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15560313	A	A	15560313	2	1	141	1	0	0	0	0	0	0	0	1	1479	643	23	1		1	BMX	23	15560313	Silent	SNP	C	TCGA-49-4510-01A-01D-1265-08	2655841	15560313	139710247	479	123062											
TSPAN7	7102	broad.mit.edu	37	chrX	38540499	38540499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttcatggagactaacatGggaatcatcgctggagtggc	13	7	2	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38540499	T	T	38540499	3	4	141	1	0	0	0	0	1	0	0	0	16777	1348	47	2	661	2	TSPAN7	23	38540499	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	22980186	38540499	116730061	480	123063											
BCOR	54880	broad.mit.edu	37	chrX	39922097	39922097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttttgcacagtctcttccCggatggcttctcgctgttgt	11	11	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39922097	A	A	39922097	3	1	141	1	0	0	0	0	1	0	0	0	1391	652	23	1	1220	1	BCOR	23	39922097	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	1381598	39922097	115348463	481	123064											
BCOR	54880	broad.mit.edu	37	chrX	39923701	39923701	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcgtttcctgtccacccgGagggtggggctgtgaggcat	16	10	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39923701	T	T	39923701	2	4	141	1	0	0	0	0	0	0	0	1	1391	1161	41	3		3	BCOR	23	39923701	Silent	SNP	G	TCGA-49-4510-01A-01D-1265-08	1604	39923701	115346859	482	123065											
DGKK	139189	broad.mit.edu	37	chrX	50121059	50121059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaagtgactatggatgaGgcagtataggagcccaagac	12	8	1	3			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50121059	T	T	50121059	1	4	141	0	1	0	0	0	0	0	0	0	4512	1015	35	2		2	DGKK	23	50121059	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	10197358	50121059	105149501	483	123066											
IQSEC2	23096	broad.mit.edu	37	chrX	53279551	53279551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagctatgccttgtctccCgctggtaagtctgcttgcac	9	15	2	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53279551	A	A	53279551	3	1	141	1	0	0	0	0	1	0	0	0	7888	652	23	1	2303	1	IQSEC2	23	53279551	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	3158492	53279551	101991009	484	123067											
HUWE1	10075	broad.mit.edu	37	chrX	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-													gggccagggccggggccgggGccggggccggggccggggcc					rs78801842	by1000genomes	TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652829	6	5	141	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652829	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	TCGA-49-4510-01A-01D-1265-08	373278	53652829	101617731	485	123068											
CHM	1121	broad.mit.edu	37	chrX	85128007	85128007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggaaaaaatatttccCaaccacaccaacatcttaat	3	12	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85128007	A	A	85128007	1	1	141	0	1	0	0	0	0	0	0	0	3381	609	21	2		2	CHM	23	85128007	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	31475178	85128007	70142553	486	123069											
GPRASP1	9737	broad.mit.edu	37	chrX	101910147	101910147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggatgagtccataattGggagttggttctggactgaa	15	4	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101910147	T	T	101910147	3	4	141	1	0	0	0	0	1	0	0	0	6788	1348	47	2	1308	2	GPRASP1	23	101910147	Missense_Mutation	SNP	G	TCGA-49-4510-01A-01D-1265-08	16782140	101910147	53360413	487	123070											
GLRA4	441509	broad.mit.edu	37	chrX	102977071	102977071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagccaataaagatcctGgtttttacctgtgttgtagt	8	8	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102977071	T	T	102977071	1	4	141	0	1	0	0	0	0	0	0	0	6521	1363	47	2		2	GLRA4	23	102977071	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	1066924	102977071	52293489	488	123071											
DCX	1641	broad.mit.edu	37	chrX	110653330	110653330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaaatgtaacgcactccCtgaggcaggttgatgttgtc	12	8	0	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110653330	A	A	110653330	3	1	141	1	0	0	0	0	1	0	0	0	4351	680	24	2	824	2	DCX	23	110653330	Missense_Mutation	SNP	C	TCGA-49-4510-01A-01D-1265-08	7676259	110653330	44617230	489	123072											
HPRT1	3251	broad.mit.edu	37	chrX	133632324	133632324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccatggtacactcagcacGgatgaaatgaaacagtgttt	10	8	1	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133632324	T	T	133632324	1	4	141	0	1	0	0	0	0	0	0	0	7405	1131	39	1		1	HPRT1	23	133632324	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	22978994	133632324	21638236	490	123073											
L1CAM	3897	broad.mit.edu	37	chrX	153136030	153136030	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggctgagggactcgacActccagccagcccccggggc	14	16	0	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153136030	C	C	153136030	1	2	141	0	1	0	0	0	0	0	0	0	8660	174	6	5		5	L1CAM	23	153136030	Intron	SNP	A	TCGA-49-4510-01A-01D-1265-08	19503706	153136030	2134530	491	123074											
TAZ	6901	broad.mit.edu	37	chrX	153648424	153648424	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccatcatcctgcccctgTggcatgtcggtgagcctggg	12	15	1	1			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153648424	C	C	153648424	3	2	141	1	0	0	0	0	1	0	0	0	15715	1696	59	5	667	5	TAZ	23	153648424	Missense_Mutation	SNP	T	TCGA-49-4510-01A-01D-1265-08	512394	153648424	1622136	492	123075											
G6PD	2539	broad.mit.edu	37	chrX	153774134	153774134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcgcactagcaggagcGggaggaggagctcaacttag	16	10	1	0			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153774134	T	T	153774134	1	4	141	0	1	0	0	0	0	0	0	0	6206	1131	39	1		1	G6PD	23	153774134	Intron	SNP	G	TCGA-49-4510-01A-01D-1265-08	125710	153774134	1496426	493	123076											
F8	2157	broad.mit.edu	37	chrX	154213134	154213134	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtgtctcatgaatgacCgcctcccctttctccttccc	6	17	2	2			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154213134	G	G	154213134	1	3	141	0	1	0	0	0	0	0	0	0	5393	667	23	4		4	F8	23	154213134	Intron	SNP	C	TCGA-49-4510-01A-01D-1265-08	439000	154213134	1057426	494	123077											
PLEKHG5	57449	broad.mit.edu	37	chr1	6535038	6535038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtcacacctgcagagaccCggagcctgcaacatggggcc	12	15	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6535038	A	A	6535038	1	1	142	0	1	0	0	0	0	0	0	0	12168	667	23	1		1	PLEKHG5	1	6535038	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08		6535038	242715583	1	123078											
NPPA	4878	broad.mit.edu	37	chr1	11906969	11906969	+	Intron	DEL	C	-	-													gcgtgagccactgtgcccagCccccccccctttttttttta							TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11906969	-	-	11906969	6	5	142	0	1	1	0	1	0	0	0	0	10686	754	26	0		0	NPPA	1	11906969	Intron	DEL	C	TCGA-49-4512-01A-21D-1855-08	5371931	11906969	237343652	2	123079											
ASB17	127247	broad.mit.edu	37	chr1	76397748	76397748	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttcaaaacggtatcctgAtttttccacaaatgcaatgt	5	9	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76397748	T	T	76397748	3	4	142	1	0	0	0	0	1	0	0	0	1025	333	12	5	670	5	ASB17	1	76397748	Missense_Mutation	SNP	A	TCGA-49-4512-01A-21D-1855-08	64490779	76397748	172852873	3	123080											
CLCA4	22802	broad.mit.edu	37	chr1	87018940	87018940	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actgccgctgcaagctgtacGaggacacggtcttcaagccg	12	13	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87018940	A	A	87018940	1	1	142	0	1	0	0	0	0	0	0	0	3490	1073	37	4		4	CLCA4	1	87018940	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	10621192	87018940	162231681	4	123081											
MTF2	22823	broad.mit.edu	37	chr1	93545226	93545226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtatgtgggtgcctttGcatttatgtgtatattgaaa	10	5	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93545226	A	A	93545226	1	1	142	0	1	0	0	0	0	0	0	0	10017	1334	46	4		4	MTF2	1	93545226	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	6526286	93545226	155705395	5	123082											
PIAS3	10401	broad.mit.edu	37	chr1	145579289	145579289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaagattattttccccCcaacctctttgtcaaggtca	6	13	3	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145579289	A	A	145579289	3	1	142	1	0	0	0	0	1	0	0	0	11972	623	22	2	644	2	PIAS3	1	145579289	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	52034063	145579289	103671332	6	123083											
ADAR	103	broad.mit.edu	37	chr1	154557557	154557557	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcattattcacctgggaccTgtaagataaggagctcacag	9	10	3	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154557557	A	A	154557557	1	1	142	0	1	0	0	0	0	0	0	0	281	1595	55	5		5	ADAR	1	154557557	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	8978268	154557557	94693064	7	123084											
FCRL2	79368	broad.mit.edu	37	chr1	157737339	157737339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcagaaaagatttgtgatGcctcaatagattcacaaact	6	7	3	4	rs149880764		TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157737339	T	T	157737339	1	4	142	0	1	0	0	0	0	0	0	0	5852	1334	46	3		3	FCRL2	1	157737339	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	3179782	157737339	91513282	8	123085											
DDR2	4921	broad.mit.edu	37	chr1	162745672	162745672	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttctcctccctgtggtcaTgagagtaacctgggatctga	10	12	3	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162745672	C	C	162745672	1	2	142	0	1	0	0	0	0	0	0	0	4370	1479	51	5		5	DDR2	1	162745672	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	5008333	162745672	86504949	9	123086											
TDRD5	163589	broad.mit.edu	37	chr1	179558222	179558222	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggagtatggctgcccaaCgagcactgagtgctcatggc	13	12	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179558222	T	T	179558222	1	4	142	0	1	0	0	0	0	0	0	0	15855	551	19	4		4	TDRD5	1	179558222	5'Flank	SNP	C	TCGA-49-4512-01A-21D-1855-08	16812550	179558222	69692399	10	123087											
PTPRC	5788	broad.mit.edu	37	chr1	198711192	198711192	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaacaacaacaaAaaaactccaacagaatccac	1	10	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198711192	C	C	198711192	1	2	142	0	1	0	0	0	0	0	0	0	12905	29	1	5		5	PTPRC	1	198711192	Intron	SNP	A	TCGA-49-4512-01A-21D-1855-08	19152970	198711192	50539429	11	123088											
LYST	1130	broad.mit.edu	37	chr1	235950598	235950598	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatgttgccatttgcttggGaggaaaatattctcctgtga	10	6	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235950598	A	A	235950598	2	1	142	1	0	0	0	0	0	0	0	1	9216	1161	41	4		4	LYST	1	235950598	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	37239406	235950598	13300023	12	123089											
ID2	3398	broad.mit.edu	37	chr2	8822905	8822906	+	Intron	INS	-	C	C													ggactacaaaaaaaaaaaaaINSaaaaaaaaaaaaccctttct					rs55940816		TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8822906	C	C	8822905	6	5	142	0	1	1	1	0	0	0	0	0	7560	29	1	0		0	ID2	2	8822905	Intron	INS	-	TCGA-49-4512-01A-21D-1855-08		8822905	234376468	13	123090											
GRHL1	29841	broad.mit.edu	37	chr2	10130834	10130834	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacctacagggagctgagcGgaaaatcagggatgaagaac	13	7	1	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10130834	A	A	10130834	3	1	142	1	0	0	0	0	1	0	0	0	6829	1116	39	4	1318	4	GRHL1	2	10130834	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	1307929	10130834	233068539	14	123091											
GRHL1	29841	broad.mit.edu	37	chr2	10130880	10130880	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagcaaaagaaaaggcaaGtgtcctgaccccagctccca	8	13	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10130880	A	A	10130880	1	1	142	0	1	0	0	0	0	0	0	0	6829	1044	36	4		4	GRHL1	2	10130880	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	46	10130880	233068493	15	123092											
NT5C1B	93034	broad.mit.edu	37	chr2	18766072	18766072	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcattttggtgctgcgcCgggagccaggatcgggctct	15	11	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18766072	T	T	18766072	3	4	142	1	0	0	0	0	1	0	0	0	10781	652	23	4	1245	4	NT5C1B	2	18766072	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	8635192	18766072	224433301	16	123093											
CEBPZ	10153	broad.mit.edu	37	chr2	37454813	37454813	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactttaaacagtgtgtcaAtctgctcccttactttgtca	5	11	3	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37454813	G	G	37454813	3	3	142	1	0	0	0	0	1	0	0	0	3234	101	4	5	1701	5	CEBPZ	2	37454813	Missense_Mutation	SNP	A	TCGA-49-4512-01A-21D-1855-08	18688741	37454813	205744560	17	123094											
CCT7	10574	broad.mit.edu	37	chr2	73467659	73467659	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtagacattgccaaatcCcaagatgctgaggtaggaaa	11	7	0	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73467659	A	A	73467659	2	1	142	1	0	0	0	0	0	0	0	1	2989	610	22	2		2	CCT7	2	73467659	Silent	SNP	C	TCGA-49-4512-01A-21D-1855-08	36012846	73467659	169731714	18	123095											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460326	107460326	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggagctgggtacaggctcAgcggggttgctgtcggtgaa	19	7	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107460326	G	G	107460326	2	3	142	1	0	0	0	0	0	0	0	1	15340	175	7	5		5	ST6GAL2	2	107460326	Silent	SNP	A	TCGA-49-4512-01A-21D-1855-08	33992667	107460326	135739047	19	123096											
FBLN7	129804	broad.mit.edu	37	chr2	112945183	112945183	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcctcccgcctgttccCgccctctcaccagtgcaccc	8	21	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112945183	A	A	112945183	1	1	142	0	1	0	0	0	0	0	0	0	5758	667	23	1		1	FBLN7	2	112945183	3'UTR	SNP	C	TCGA-49-4512-01A-21D-1855-08	5484857	112945183	130254190	20	123097											
GPR39	2863	broad.mit.edu	37	chr2	133403252	133403252	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtcactctcactctgcagtCtcaaactatgcccccatcag	5	17	5	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133403252	G	G	133403252	1	3	142	0	1	0	0	0	0	0	0	0	6758	928	32	4		4	GPR39	2	133403252	3'UTR	SNP	C	TCGA-49-4512-01A-21D-1855-08	20458069	133403252	109796121	21	123098											
R3HDM1	23518	broad.mit.edu	37	chr2	136393626	136393626	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacatactataccagtagttCatttgcctaaaaattatcct	4	9	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136393626	A	A	136393626	1	1	142	0	1	0	0	0	0	0	0	0	12995	841	29	3		3	R3HDM1	2	136393626	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	2990374	136393626	106805747	22	123099											
THSD7B	80731	broad.mit.edu	37	chr2	137988524	137988525	+	Intron	INS	-	G	G													ctgaagaaactatcatttttINSgggggggtactttaaactga					rs34640721		TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137988525	G	G	137988524	6	5	142	0	1	1	1	0	0	0	0	0	16003	1827	63	0		0	THSD7B	2	137988524	Intron	INS	-	TCGA-49-4512-01A-21D-1855-08	1594898	137988524	105210849	23	123100											
SCN7A	6332	broad.mit.edu	37	chr2	167327178	167327178	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttcttgcagtttgaagcGttggaatgaagtccagaggt	13	5	1	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167327178	A	A	167327178	3	1	142	1	0	0	0	0	1	0	0	0	14036	1145	40	4	4517	4	SCN7A	2	167327178	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	29338654	167327178	75872195	24	123101											
ITGA6	3655	broad.mit.edu	37	chr2	173335847	173335847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttaggtaggagcaggcaCagatggctgcctttgcccac	12	11	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173335847	A	A	173335847	1	1	142	0	1	0	0	0	0	0	0	0	7950	493	17	3		3	ITGA6	2	173335847	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	6008669	173335847	69863526	25	123102											
TTN	7273	broad.mit.edu	37	chr2	179584290	179584290	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attctactcaccagaaacatGgacggatacagtgcagttac	8	10	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179584290	C	C	179584290	3	2	142	1	0	0	0	0	1	0	0	0	16861	1348	47	4	80724	4	TTN	2	179584290	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	6248443	179584290	63615083	26	123103											
MYEOV2	150678	broad.mit.edu	37	chr2	241073371	241073371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaaaaagtctgcatgaaCggccttttcattggctgcca	9	9	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241073371	A	A	241073371	3	1	142	1	0	0	0	0	1	0	0	0	10120	536	19	3	570	3	MYEOV2	2	241073371	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	61489081	241073371	2126002	27	123104											
DTYMK	1841	broad.mit.edu	37	chr2	242625331	242625331	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacaaaatgcaagtgagatCaggctttccctctatattac	6	10	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242625331	T	T	242625331	1	4	142	0	1	0	0	0	0	0	0	0	4838	841	29	4		4	DTYMK	2	242625331	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	1551960	242625331	574042	28	123105											
CNTN6	27255	broad.mit.edu	37	chr3	1339581	1339581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatttaacaggtgtgatgGgggaatatgaaccaaagatt	12	3	0	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1339581	T	T	1339581	3	4	142	1	0	0	0	0	1	0	0	0	3677	1232	43	2	689	2	CNTN6	3	1339581	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08		1339581	196682849	29	123106											
LRRC2	79442	broad.mit.edu	37	chr3	46562968	46562968	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtattacataagtggacGtctgtacactaattttaaat	6	5	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46562968	A	A	46562968	1	1	142	0	1	0	0	0	0	0	0	0	9063	1160	40	4		4	LRRC2	3	46562968	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	45223387	46562968	151459462	30	123107											
DNAH1	25981	broad.mit.edu	37	chr3	52416635	52416635	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccacagatgggcaggttgaGagcatgagaccaaacccaac	12	11	0	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52416635	T	T	52416635	1	4	142	0	1	0	0	0	0	0	0	0	4637	957	33	3		3	DNAH1	3	52416635	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	5853667	52416635	145605795	31	123108											
UBA3	9039	broad.mit.edu	37	chr3	69129290	69129292	+	In_Frame_Del	DEL	CTT	-	-													ccagcagctcctctattctcCttcttttcttctccctaaaa							TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69129292	-	-	69129290	7	5	142	1	0	1	0	1	0	0	0	0	16955	681	24	0	1424	0	UBA3	3	69129290	In_Frame_Del	DEL	CTT	TCGA-49-4512-01A-21D-1855-08	16712655	69129290	128893140	32	123109											
IFT57	55081	broad.mit.edu	37	chr3	107885931	107885931	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatccattctacaaataatCaactacatgtgcaaaagaag	4	9	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107885931	A	A	107885931	1	1	142	0	1	0	0	0	0	0	0	0	7632	841	29	3		3	IFT57	3	107885931	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	38756641	107885931	90136499	33	123110											
POPDC2	64091	broad.mit.edu	37	chr3	119373488	119373488	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaagagaagagatcatgtGggaaaaggaaaatggctctc	15	4	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119373488	A	A	119373488	1	1	142	0	1	0	0	0	0	0	0	0	12350	1363	47	4		4	POPDC2	3	119373488	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	11487557	119373488	78648942	34	123111											
SPATA16	83893	broad.mit.edu	37	chr3	172835183	172835183	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttctttaaggggatgtgAggcagaggcatggtgattaa	15	3	1	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172835183	G	G	172835183	2	3	142	1	0	0	0	0	0	0	0	1	15117	291	11	5		5	SPATA16	3	172835183	Silent	SNP	A	TCGA-49-4512-01A-21D-1855-08	53461695	172835183	25187247	35	123112											
MRPL47	57129	broad.mit.edu	37	chr3	179322451	179322451	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacgcgtttccgccaacgaTagcgtcacttccggcgtctc	9	15	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179322451	C	C	179322451	1	2	142	0	1	0	0	0	0	0	0	0	9905	1421	49	5		5	MRPL47	3	179322451	5'Flank	SNP	T	TCGA-49-4512-01A-21D-1855-08	6487268	179322451	18699979	36	123113											
FRAS1	80144	broad.mit.edu	37	chr4	79410160	79410160	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatactcagagccattccGctcaggtcatggaggacttt	10	11	3	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79410160	T	T	79410160	3	4	142	1	0	0	0	0	1	0	0	0	6102	1087	38	3	9193	3	FRAS1	4	79410160	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08		79410160	111744116	37	123114											
ANK2	287	broad.mit.edu	37	chr4	114170985	114170985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtggtggaacttctgttGgaacggggtgcccccttgct	14	10	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114170985	T	T	114170985	3	4	142	1	0	0	0	0	1	0	0	0	621	1339	47	2	1020	2	ANK2	4	114170985	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	34760825	114170985	76983291	38	123115											
NPY1R	4886	broad.mit.edu	37	chr4	164247318	164247318	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacagcaatgagaaccagaGagaaaatggacacagtgatt	10	8	0	4			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164247318	A	A	164247318	3	1	142	1	0	0	0	0	1	0	0	0	10703	942	33	4	773	4	NPY1R	4	164247318	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	50076333	164247318	26906958	39	123116											
ADCY2	108	broad.mit.edu	37	chr5	7706887	7706887	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgctactggagttgatatCaacatgcgcgtgggcgtgca	14	8	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7706887	T	T	7706887	2	4	142	1	0	0	0	0	0	0	0	1	294	816	29	4		4	ADCY2	5	7706887	Silent	SNP	C	TCGA-49-4512-01A-21D-1855-08		7706887	173208373	40	123117											
BASP1	10409	broad.mit.edu	37	chr5	17275411	17275411	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacaagaaggccgagggcgCggcgacggaagaggagggga	21	7	0	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17275411	T	T	17275411	3	4	142	1	0	0	0	0	1	0	0	0	1322	768	27	4	88	4	BASP1	5	17275411	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	9568524	17275411	163639849	41	123118											
CDH10	1008	broad.mit.edu	37	chr5	24537504	24537504	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttacctacaacagacatttCgggaacactagctgtataga	7	10	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24537504	T	T	24537504	3	4	142	1	0	0	0	0	1	0	0	0	3126	893	31	4	1895	4	CDH10	5	24537504	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	7262093	24537504	156377756	42	123119											
IL31RA	133396	broad.mit.edu	37	chr5	55210667	55210667	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccatcttaaaatcttctctCtcattagcaaattgactcat	2	12	5	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55210667	T	T	55210667	1	4	142	0	1	0	0	0	0	0	0	0	7761	928	32	4		4	IL31RA	5	55210667	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	30673163	55210667	125704593	43	123120											
LNPEP	4012	broad.mit.edu	37	chr5	96322231	96322231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagaactgtcttttcccCtttgcttgtagaagtcatca	6	10	3	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96322231	A	A	96322231	1	1	142	0	1	0	0	0	0	0	0	0	8938	696	24	2		2	LNPEP	5	96322231	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	41111564	96322231	84593029	44	123121											
ZMAT2	153527	broad.mit.edu	37	chr5	140080273	140080273	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcttgaggctacctcagtCttctcgtacagtccaaagag	10	11	4	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140080273	G	G	140080273	1	3	142	0	1	0	0	0	0	0	0	0	17818	928	32	4		4	ZMAT2	5	140080273	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	43758042	140080273	40834987	45	123122											
ZMAT2	153527	broad.mit.edu	37	chr5	140080354	140080354	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcgcggttccctgcttctCtaggggcccagacacggcga	15	14	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140080354	T	T	140080354	1	4	142	0	1	0	0	0	0	0	0	0	17818	928	32	4		4	ZMAT2	5	140080354	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	81	140080354	40834906	46	123123											
ARHGAP26	23092	broad.mit.edu	37	chr5	142601850	142601850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacCccacacacacatctgccgcc	2	22	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142601850	A	A	142601850	1	1	142	0	1	0	0	0	0	0	0	0	877	638	22	2		2	ARHGAP26	5	142601850	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	2521496	142601850	38313410	47	123124											
ADAM19	8728	broad.mit.edu	37	chr5	156915310	156915310	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgcggggggaattggcCggcttggaggaggcctcctg	20	8	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156915310	T	T	156915310	3	4	142	1	0	0	0	0	1	0	0	0	240	652	23	4	255	4	ADAM19	5	156915310	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	14313460	156915310	23999950	48	123125											
RARS	5917	broad.mit.edu	37	chr5	167922429	167922429	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctttgaatttgcagggtAtgacgtgctcaggtatgtgc	12	8	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167922429	G	G	167922429	3	3	142	1	0	0	0	0	1	0	0	0	13166	449	16	5	711	5	RARS	5	167922429	Missense_Mutation	SNP	A	TCGA-49-4512-01A-21D-1855-08	11007119	167922429	12992831	49	123126											
NPM1	4869	broad.mit.edu	37	chr5	170827251	170827251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaggttgttaaactaaCaatagaaatggtgatttttt	7	4	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170827251	A	A	170827251	1	1	142	0	1	0	0	0	0	0	0	0	10682	493	17	3		3	NPM1	5	170827251	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	2904822	170827251	10088009	50	123127											
DTNBP1	84062	broad.mit.edu	37	chr6	15523084	15523084	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttctttaagtttctcaCacattattggcaattatgta	6	7	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15523084	A	A	15523084	1	1	142	0	1	0	0	0	0	0	0	0	4830	493	17	3		3	DTNBP1	6	15523084	3'UTR	SNP	C	TCGA-49-4512-01A-21D-1855-08		15523084	155591983	51	123128											
HFE	3077	broad.mit.edu	37	chr6	26093486	26093486	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggaacaagggggaagtctCttagtacctctgccccaggg	13	10	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26093486	T	T	26093486	1	4	142	0	1	0	0	0	0	0	0	0	7148	928	32	4		4	HFE	6	26093486	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	10570402	26093486	145021581	52	123129											
ZNRD1	30834	broad.mit.edu	37	chr6	30029635	30029635	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccaggggaaaggggagGtttccggtgtcagctctctc	15	11	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30029635	C	C	30029635	1	2	142	0	1	0	0	0	0	0	0	0	18339	1276	44	4		4	ZNRD1	6	30029635	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	3936149	30029635	141085432	53	123130											
EHMT2	10919	broad.mit.edu	37	chr6	31854546	31854546	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacgccctgctgcctgcgcGcacaccttgctatagacaca	8	18	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31854546	A	A	31854546	1	1	142	0	1	0	0	0	0	0	0	0	5024	1102	38	4		4	EHMT2	6	31854546	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	1824911	31854546	139260521	54	123131											
ZNF318	24149	broad.mit.edu	37	chr6	43305942	43305954	+	Frame_Shift_Del	DEL	TTCTAGAAGCTGA	-	-													gagacttctgtacctagaagTtctagaagctgattctggag							TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43305954	-	-	43305942	7	5	142	1	0	1	0	1	0	0	0	0	17962	1725	60	0	1049	0	ZNF318	6	43305942	Frame_Shift_Del	DEL	TTCTAGAAGCTGA	TCGA-49-4512-01A-21D-1855-08	11451396	43305942	127809125	55	123132											
MAP7	9053	broad.mit.edu	37	chr6	136680945	136680945	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataaattggtttgagttcaTtgacagaaatacctgttcct	7	6	1	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136680945	C	C	136680945	1	2	142	0	1	0	0	0	0	0	0	0	9358	1508	52	5		5	MAP7	6	136680945	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	93375003	136680945	34434122	56	123133											
SLC22A2	6582	broad.mit.edu	37	chr6	160679385	160679385	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cactctcttacctcggtgacGatggacgagccaggcgtctc	11	14	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160679385	T	T	160679385	2	4	142	1	0	0	0	0	0	0	0	1	14564	1048	37	3		3	SLC22A2	6	160679385	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	23998440	160679385	10435682	57	123134											
POM121	9883	broad.mit.edu	37	chr7	72398735	72398735	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctgggcaacaagagCgaaactctgtctgaaaaaaa	9	10	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72398735	T	T	72398735	1	4	142	0	1	0	0	0	0	0	0	0	12334	783	27	4		4	POM121	7	72398735	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08		72398735	86739928	58	123135											
AKAP9	10142	broad.mit.edu	37	chr7	91645514	91645514	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaaatgcagaagacaaagaGaattctggtgattacatttc	9	5	1	4			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91645514	A	A	91645514	2	1	142	1	0	0	0	0	0	0	0	1	459	933	33	4		4	AKAP9	7	91645514	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	19246779	91645514	67493149	59	123136											
AKAP9	10142	broad.mit.edu	37	chr7	91645620	91645620	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actattaaacagtatttaatCctcttaaattaattgatgac	3	6	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91645620	A	A	91645620	1	1	142	0	1	0	0	0	0	0	0	0	459	870	30	3		3	AKAP9	7	91645620	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	106	91645620	67493043	60	123137											
BAIAP2L1	55971	broad.mit.edu	37	chr7	98015076	98015076	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttttcacaaatagcactCtttatttgccactatttgaa	3	8	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98015076	T	T	98015076	1	4	142	0	1	0	0	0	0	0	0	0	1307	928	32	4		4	BAIAP2L1	7	98015076	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	6369456	98015076	61123587	61	123138											
ACHE	43	broad.mit.edu	37	chr7	100491461	100491461	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggggtatggtgtccacacGttgaggtacaggcagtcctc	15	10	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100491461	A	A	100491461	2	1	142	1	0	0	0	0	0	0	0	1	141	1136	40	4		4	ACHE	7	100491461	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	2476385	100491461	58647202	62	123139											
DNAJC2	27000	broad.mit.edu	37	chr7	102956536	102956536	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattagcaataacttcccatCtgataggatatattatacaa	4	7	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102956536	G	G	102956536	5	3	142	1	0	0	0	0	0	0	1	0	4679	927	32	4	454	4	DNAJC2	7	102956536	Splice_Site	SNP	C	TCGA-49-4512-01A-21D-1855-08	2465075	102956536	56182127	63	123140											
CHRM2	1129	broad.mit.edu	37	chr7	136700046	136700046	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatggcaggtatgatgattgCagctgcctgggtcctctctt	12	9	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700046	T	T	136700046	3	4	142	1	0	0	0	0	1	0	0	0	3408	710	25	4	436	4	CHRM2	7	136700046	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	33743510	136700046	22438617	64	123141											
MGAM	8972	broad.mit.edu	37	chr7	141783107	141783107	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcattttcagatgtgaCgttccagcccctgcctgcct	7	14	3	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141783107	G	G	141783107	1	3	142	0	1	0	0	0	0	0	0	0	9634	551	19	4		4	MGAM	7	141783107	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	5083061	141783107	17355556	65	123142											
GALNTL5	168391	broad.mit.edu	37	chr7	151668112	151668112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattatcagtagaagcttGggcatcgaaagagaagtgcc	13	6	1	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151668112	T	T	151668112	3	4	142	1	0	0	0	0	1	0	0	0	6286	1339	47	2	336	2	GALNTL5	7	151668112	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	9885005	151668112	7470551	66	123143											
ESYT2	57488	broad.mit.edu	37	chr7	158554106	158554106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcactgtgtgatggtgaaGgggtggttcgtggctcctct	17	8	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158554106	T	T	158554106	1	4	142	0	1	0	0	0	0	0	0	0	5307	1015	35	2		2	ESYT2	7	158554106	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	6885994	158554106	584557	67	123144											
ANK1	286	broad.mit.edu	37	chr8	41615542	41615542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagacaacaggcctgcctcCatcccacttacctggttaca	7	15	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41615542	T	T	41615542	1	4	142	0	1	0	0	0	0	0	0	0	620	609	21	4		4	ANK1	8	41615542	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08		41615542	104748480	68	123145											
ANXA13	312	broad.mit.edu	37	chr8	124693323	124693323	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaacgttactgcccttaaCttacacagcttggcctggct	7	13	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124693323	T	T	124693323	1	4	142	0	1	0	0	0	0	0	0	0	717	580	20	4		4	ANXA13	8	124693323	3'UTR	SNP	C	TCGA-49-4512-01A-21D-1855-08	83077781	124693323	21670699	69	123146											
KCNV2	169522	broad.mit.edu	37	chr9	2719006	2719006	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatcgccatgggcatcTtcactttctctgcggctgtc	8	14	5	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2719006	G	G	2719006	3	3	142	1	0	0	0	0	1	0	0	0	8165	1609	56	5	1269	5	KCNV2	9	2719006	Missense_Mutation	SNP	T	TCGA-49-4512-01A-21D-1855-08		2719006	138494425	70	123147											
IFT74	80173	broad.mit.edu	37	chr9	26980642	26980642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaacatatcttttcatcCgtatgttttactcgaaatat	4	7	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26980642	A	A	26980642	1	1	142	0	1	0	0	0	0	0	0	0	7633	667	23	1		1	IFT74	9	26980642	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	24261636	26980642	114232789	71	123148											
GALT	2592	broad.mit.edu	37	chr9	34648627	34648627	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacttagactcgggtggTtagtggtagaggtggtgaga	19	3	0	4			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34648627	C	C	34648627	1	2	142	0	1	0	0	0	0	0	0	0	6292	1740	60	5		5	GALT	9	34648627	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	7667985	34648627	106564804	72	123149											
HIATL1	84641	broad.mit.edu	37	chr9	97200674	97200674	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actaacctttgctttggtttCctctccagggcctgctctct	7	14	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97200674	G	G	97200674	1	3	142	0	1	0	0	0	0	0	0	0	7165	870	30	4		4	HIATL1	9	97200674	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	62552047	97200674	44012757	73	123150											
CORO2A	7464	broad.mit.edu	37	chr9	100893269	100893269	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtagagcatgctggtgtccgCgtcatagaagggaaacagca	14	8	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100893269	G	G	100893269	3	3	142	1	0	0	0	0	1	0	0	0	3788	768	27	4	763	4	CORO2A	9	100893269	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	3692595	100893269	40320162	74	123151											
ROD1	9991	broad.mit.edu	37	chr9	115092722	115092722	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatagtaaaagattcctaccTttaaaccgactgttataaga	6	7	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115092722	A	A	115092722	3	1	142	1	0	0	0	0	1	0	0	0	13630	1623	56	5	1682	5	ROD1	9	115092722	Missense_Mutation	SNP	T	TCGA-49-4512-01A-21D-1855-08	14199453	115092722	26120709	75	123152											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123298731	123298731	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaagcttgctttccaaaCgcaaccgaagagccttctcc	7	14	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123298731	T	T	123298731	3	4	142	1	0	0	0	0	1	0	0	0	3176	536	19	4	5228	4	CDK5RAP2	9	123298731	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	8206009	123298731	17914700	76	123153											
SURF1	6834	broad.mit.edu	37	chr9	136219499	136219499	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagattgcatggagcctGgtggactcccagagccttct	13	10	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136219499	A	A	136219499	1	1	142	0	1	0	0	0	0	0	0	0	15521	1363	47	4		4	SURF1	9	136219499	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	12920768	136219499	4993932	77	123154											
SSNA1	8636	broad.mit.edu	37	chr9	140083651	140083651	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcgtcaacgagaacctggcAcgcaagattgcctctcgcaa	10	14	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140083651	G	G	140083651	2	3	142	1	0	0	0	0	0	0	0	1	15305	146	6	5		5	SSNA1	9	140083651	Silent	SNP	A	TCGA-49-4512-01A-21D-1855-08	3864152	140083651	1129780	78	123155											
SFMBT2	57713	broad.mit.edu	37	chr10	7409719	7409719	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcggtcctccccgtaacCgcagtagcgcagaagcagca	11	16	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7409719	T	T	7409719	3	4	142	1	0	0	0	0	1	0	0	0	14271	652	23	4	2428	4	SFMBT2	10	7409719	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08		7409719	128125028	79	123156											
DNAJC12	56521	broad.mit.edu	37	chr10	69565332	69565332	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattctgcagttatataacGtgacttacctgaagaatctg	7	9	2	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69565332	A	A	69565332	1	1	142	0	1	0	0	0	0	0	0	0	4671	1160	40	4		4	DNAJC12	10	69565332	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	62155613	69565332	65969415	80	123157											
CDH23	64072	broad.mit.edu	37	chr10	73562620	73562620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggctgccccatcctgCtccttacctttggccttgac	9	16	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73562620	A	A	73562620	1	1	142	0	1	0	0	0	0	0	0	0	3138	812	28	3		3	CDH23	10	73562620	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	3997288	73562620	61972127	81	123158											
RRP12	23223	broad.mit.edu	37	chr10	99139221	99139221	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaggggacagccctgaGggcagtgcatagcatactga	16	8	0	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99139221	C	C	99139221	1	2	142	0	1	0	0	0	0	0	0	0	13797	1015	35	4		4	RRP12	10	99139221	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	25576601	99139221	36395526	82	123159											
LOXL4	84171	broad.mit.edu	37	chr10	100011426	100011426	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctacagtcactccctgttctCcaaagttggcacatgcgtag	8	13	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100011426	G	G	100011426	3	3	142	1	0	0	0	0	1	0	0	0	8989	855	30	4	297	4	LOXL4	10	100011426	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	872205	100011426	35523321	83	123160											
CDHR5	53841	broad.mit.edu	37	chr11	621377	621377	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaggtcatgttcggccGctcgtagaagtccaggggcc	14	12	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	621377	T	T	621377	2	4	142	1	0	0	0	0	0	0	0	1	3152	1086	38	3		3	CDHR5	11	621377	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08		621377	134385139	84	123161											
HPX	3263	broad.mit.edu	37	chr11	6461677	6461677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctaaggtcctaaacgccCtaacctcagtccctcctacc	5	17	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6461677	A	A	6461677	1	1	142	0	1	0	0	0	0	0	0	0	7413	696	24	2		2	HPX	11	6461677	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	5840300	6461677	128544839	85	123162											
DCDC1	341019	broad.mit.edu	37	chr11	31312327	31312327	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaacaggcttggttttcCgtcttttgatatcagtagga	10	6	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31312327	T	T	31312327	3	4	142	1	0	0	0	0	1	0	0	0	4317	652	23	4	249	4	DCDC1	11	31312327	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	24850650	31312327	103694189	86	123163											
DAGLA	747	broad.mit.edu	37	chr11	61508792	61508792	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccttgccctggagctgccGactgcagaccaccgcaacag	12	16	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61508792	A	A	61508792	2	1	142	1	0	0	0	0	0	0	0	1	4259	1045	37	4		4	DAGLA	11	61508792	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	30196465	61508792	73497724	87	123164											
MARK2	2011	broad.mit.edu	37	chr11	63670267	63670267	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccacggtgagccgcaccCcccgctctctccttccttcc	6	23	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63670267	T	T	63670267	1	4	142	0	1	0	0	0	0	0	0	0	9405	638	22	4		4	MARK2	11	63670267	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	2161475	63670267	71336249	88	123165											
FKBP2	2286	broad.mit.edu	37	chr11	64011314	64011314	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtgcatcttcaacaggGtatggagagcggggagctcc	14	9	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64011314	T	T	64011314	2	4	142	1	0	0	0	0	0	0	0	1	5965	1275	44	3		3	FKBP2	11	64011314	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	341047	64011314	70995202	89	123166											
NRXN2	9379	broad.mit.edu	37	chr11	64434911	64434911	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagctccacccccagcccGccggccctggctgaagagca	11	20	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64434911	A	A	64434911	3	1	142	1	0	0	0	0	1	0	0	0	10761	1086	38	4	3858	4	NRXN2	11	64434911	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	423597	64434911	70571605	90	123167											
POU2AF1	5450	broad.mit.edu	37	chr11	111230773	111230773	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccctcttgccatcaaaGccaggaaaccaaagcattga	6	14	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111230773	T	T	111230773	1	4	142	0	1	0	0	0	0	0	0	0	12366	986	34	3		3	POU2AF1	11	111230773	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	46795862	111230773	23775743	91	123168											
SDHD	6392	broad.mit.edu	37	chr11	111957468	111957468	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcgcctcaggctcgccaCcttccgacagctgtgtttgc	10	15	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111957468	A	A	111957468	1	1	142	0	1	0	0	0	0	0	0	0	14080	507	18	3		3	SDHD	11	111957468	5'Flank	SNP	C	TCGA-49-4512-01A-21D-1855-08	726695	111957468	23049048	92	123169											
PHLDB1	23187	broad.mit.edu	37	chr11	118506083	118506083	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggcattgcaagcaccacCcaaccccctttgtcactgtc	7	16	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118506083	T	T	118506083	1	4	142	0	1	0	0	0	0	0	0	0	11946	638	22	4		4	PHLDB1	11	118506083	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	6548615	118506083	16500433	93	123170											
C12orf4	57102	broad.mit.edu	37	chr12	4599593	4599594	+	Intron	INS	-	A	A													agcgattagccttttgtgttINSgtttttgggattttagggca							TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4599594	A	A	4599593	6	5	142	0	1	1	1	0	0	0	0	0	1698	1827	63	0		0	C12orf4	12	4599593	Intron	INS	-	TCGA-49-4512-01A-21D-1855-08		4599593	129252302	94	123171											
PPFIBP1	8496	broad.mit.edu	37	chr12	27809527	27809527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcatgatctgctattttTaaatgaatttgtaacttgta	6	5	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27809527	C	C	27809527	1	2	142	0	1	0	0	0	0	0	0	0	12409	1769	61	5		5	PPFIBP1	12	27809527	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	23209934	27809527	106042368	95	123172											
CCDC91	55297	broad.mit.edu	37	chr12	28412399	28412399	+	Intron	DEL	T	-	-													ttggtatccaggaattagggTttttttttttttttttccca							TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28412399	-	-	28412399	6	5	142	0	1	1	0	1	0	0	0	0	2898	1740	60	0		0	CCDC91	12	28412399	Intron	DEL	T	TCGA-49-4512-01A-21D-1855-08	602872	28412399	105439496	96	123173											
MYO1A	4640	broad.mit.edu	37	chr12	57435121	57435121	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactccaagactgtttctcCgtctcagtcctacctcccct	4	18	3	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57435121	T	T	57435121	1	4	142	0	1	0	0	0	0	0	0	0	10162	667	23	4		4	MYO1A	12	57435121	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	29022722	57435121	76416774	97	123174											
TMEM5	10329	broad.mit.edu	37	chr12	64202648	64202648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatacatctgtgcaccacGgtgctcctctgcagttactc	9	13	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64202648	T	T	64202648	3	4	142	1	0	0	0	0	1	0	0	0	16297	1116	39	1	1130	1	TMEM5	12	64202648	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	6767527	64202648	69649247	98	123175											
GLIPR1	11010	broad.mit.edu	37	chr12	75884200	75884201	+	Frame_Shift_Ins	INS	-	A	A													ttcaggttgtttgggcagatINSagttacaaagttggctgcgc							TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75884201	A	A	75884200	7	5	142	1	0	1	1	0	0	0	0	0	6505	1403	49	0	445	0	GLIPR1	12	75884200	Frame_Shift_Ins	INS	-	TCGA-49-4512-01A-21D-1855-08	11681552	75884200	57967695	99	123176											
BBS10	79738	broad.mit.edu	37	chr12	76740459	76740459	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgccattttggtcattggTttgtgtcatgtaatttagat	10	4	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76740459	C	C	76740459	3	2	142	1	0	0	0	0	1	0	0	0	1341	1725	60	5	869	5	BBS10	12	76740459	Missense_Mutation	SNP	T	TCGA-49-4512-01A-21D-1855-08	856259	76740459	57111436	100	123177											
FICD	11153	broad.mit.edu	37	chr12	108912143	108912143	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctgccccctagcctcCctccctcacagcgcttcttt	5	21	3	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108912143	T	T	108912143	1	4	142	0	1	0	0	0	0	0	0	0	5944	638	22	4		4	FICD	12	108912143	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	32171684	108912143	24939752	101	123178											
DNAH10	196385	broad.mit.edu	37	chr12	124395020	124395020	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactagttatgcttattttgTctattttatgctcccaagat	5	7	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124395020	A	A	124395020	1	1	142	0	1	0	0	0	0	0	0	0	4638	1682	58	5		5	DNAH10	12	124395020	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	15482877	124395020	9456875	102	123179											
PARP2	10038	broad.mit.edu	37	chr14	20824399	20824399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagttatatcagaatcccCaaattcttcagttcagctca	4	12	5	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20824399	A	A	20824399	1	1	142	0	1	0	0	0	0	0	0	0	11555	609	21	2		2	PARP2	14	20824399	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08		20824399	86525141	103	123180											
RALGAPA1	253959	broad.mit.edu	37	chr14	36190838	36190838	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atattgatataaattgttacCaaggactataaatgtagtgc	7	4	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36190838	T	T	36190838	1	4	142	0	1	0	0	0	0	0	0	0	13121	609	21	4		4	RALGAPA1	14	36190838	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	15366439	36190838	71158702	104	123181											
SYNE2	23224	broad.mit.edu	37	chr14	64375840	64375840	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcaactgagatggacAtgatataatctccattgagt	7	8	3	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64375840	C	C	64375840	1	2	142	0	1	0	0	0	0	0	0	0	15565	232	8	5		5	SYNE2	14	64375840	5'UTR	SNP	A	TCGA-49-4512-01A-21D-1855-08	28185002	64375840	42973700	105	123182											
PLCB2	5330	broad.mit.edu	37	chr15	40582689	40582689	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggacagatgcatctttGggaagtgagtcaggatccat	14	7	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40582689	T	T	40582689	1	4	142	0	1	0	0	0	0	0	0	0	12123	1363	47	2		2	PLCB2	15	40582689	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08		40582689	61948703	106	123183											
SLC30A4	7782	broad.mit.edu	37	chr15	45783137	45783137	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catggttactacacttcataCcaactaaatattatatagtc	3	9	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45783137	G	G	45783137	1	3	142	0	1	0	0	0	0	0	0	0	14671	522	18	4		4	SLC30A4	15	45783137	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	5200448	45783137	56748255	107	123184											
MTFMT	123263	broad.mit.edu	37	chr15	65316163	65316163	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatgtagaaattagtatgtCagtgggctttaccacttcgt	9	6	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65316163	A	A	65316163	1	1	142	0	1	0	0	0	0	0	0	0	10018	841	29	3		3	MTFMT	15	65316163	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	19533026	65316163	37215229	108	123185											
ALPK3	57538	broad.mit.edu	37	chr15	85411520	85411520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggcaggaaaggctccCagctgagtcctcagccccag	12	15	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85411520	A	A	85411520	3	1	142	1	0	0	0	0	1	0	0	0	546	595	21	2	5611	2	ALPK3	15	85411520	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	20095357	85411520	17119872	109	123186											
ST8SIA2	8128	broad.mit.edu	37	chr15	92981770	92981770	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttgggacttgtgccatcGtgggcaactcgggggtcttg	15	9	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92981770	A	A	92981770	3	1	142	1	0	0	0	0	1	0	0	0	15350	1145	40	4	492	4	ST8SIA2	15	92981770	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	7570250	92981770	9549622	110	123187											
ASB7	140460	broad.mit.edu	37	chr15	101186554	101186554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccttgaattgaactggTccactcatcaaggacacttc	7	12	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101186554	C	C	101186554	1	2	142	0	1	0	0	0	0	0	0	0	1032	1682	58	5		5	ASB7	15	101186554	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	8204784	101186554	1344838	111	123188											
PCSK6	5046	broad.mit.edu	37	chr15	101864969	101864969	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacacggaagcagaaggcTgggaaattctccctggagag	13	8	1	2	rs150745984	by1000genomes	TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101864969	A	A	101864969	1	1	142	0	1	0	0	0	0	0	0	0	11698	1595	55	5		5	PCSK6	15	101864969	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	678415	101864969	666423	112	123189											
GRIN2A	2903	broad.mit.edu	37	chr16	9857312	9857312	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtggaggaaagggttatcGgaggtgtggtctggcaagag	20	3	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9857312	A	A	9857312	2	1	142	1	0	0	0	0	0	0	0	1	6845	1103	39	4		4	GRIN2A	16	9857312	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08		9857312	80497441	113	123190											
TEKT5	146279	broad.mit.edu	37	chr16	10788536	10788536	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtactggtgctctcgtcCgggcaggtctggacgttggc	17	10	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10788536	A	A	10788536	2	1	142	1	0	0	0	0	0	0	0	1	15878	639	23	1		1	TEKT5	16	10788536	Silent	SNP	C	TCGA-49-4512-01A-21D-1855-08	931224	10788536	79566217	114	123191											
ZNF48	197407	broad.mit.edu	37	chr16	30409299	30409299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcaccagcggacacaccGgggggagcagcccccccgac	13	18	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30409299	T	T	30409299	3	4	142	1	0	0	0	0	1	0	0	0	18061	1116	39	1	734	1	ZNF48	16	30409299	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	19620763	30409299	59945454	115	123192											
ITGAM	3684	broad.mit.edu	37	chr16	31277539	31277539	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggcaggactgaggtgacGtctgctcaaggtctgggctc	18	9	3	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31277539	A	A	31277539	1	1	142	0	1	0	0	0	0	0	0	0	7957	1160	40	4		4	ITGAM	16	31277539	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	868240	31277539	59077214	116	123193											
SALL1	6299	broad.mit.edu	37	chr16	51171227	51171227	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaattggagggatgccaccGttctgaatgacggagatctc	14	8	2	3	rs145423593		TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51171227	A	A	51171227	2	1	142	1	0	0	0	0	0	0	0	1	13921	1136	40	4		4	SALL1	16	51171227	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	19893688	51171227	39183526	117	123194											
SALL1	6299	broad.mit.edu	37	chr16	51173150	51173150	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtttttaaatttaccccGgtctctaaaagggaagagga	10	6	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51173150	A	A	51173150	3	1	142	1	0	0	0	0	1	0	0	0	13921	1115	39	4	999	4	SALL1	16	51173150	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	1923	51173150	39181603	118	123195											
CDH5	1003	broad.mit.edu	37	chr16	66434763	66434763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggtcatctcagacaatGggatgccaagtcgcacgggc	13	12	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66434763	T	T	66434763	3	4	142	1	0	0	0	0	1	0	0	0	3143	1348	47	2	1719	2	CDH5	16	66434763	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	15261613	66434763	23919990	119	123196											
ESRP2	80004	broad.mit.edu	37	chr16	68266596	68266596	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcagccttgctgctgtaGgggcagggcacagtgctgtc	14	11	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68266596	A	A	68266596	2	1	142	1	0	0	0	0	0	0	0	1	5301	1015	35	4		4	ESRP2	16	68266596	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	1831833	68266596	22088157	120	123197											
ST3GAL2	6483	broad.mit.edu	37	chr16	70429067	70429067	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgtgtgacttgaactgGggctgcagcatctgtggaag	16	6	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70429067	T	T	70429067	2	4	142	1	0	0	0	0	0	0	0	1	15333	1219	43	2		2	ST3GAL2	16	70429067	Silent	SNP	G	TCGA-49-4512-01A-21D-1855-08	2162471	70429067	19925686	121	123198											
CNTNAP4	85445	broad.mit.edu	37	chr16	76486488	76486488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttatttagcactgccagaCttctctggagaggaggaggt	13	7	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76486488	A	A	76486488	3	1	142	1	0	0	0	0	1	0	0	0	3681	564	20	3	1198	3	CNTNAP4	16	76486488	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	6057421	76486488	13868265	122	123199											
ADAMTS18	170692	broad.mit.edu	37	chr16	77398246	77398246	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccatattcatcaaaccttaGataggtgtcctctgtgggag	9	10	3	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77398246	C	C	77398246	3	2	142	1	0	0	0	0	1	0	0	0	263	933	33	4	2930	4	ADAMTS18	16	77398246	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	911758	77398246	12956507	123	123200											
OR1E1	8387	broad.mit.edu	37	chr17	3301440	3301440	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcataggggatggatgggtCctggttctgcatgttctgta	15	7	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3301440	T	T	3301440	3	4	142	1	0	0	0	0	1	0	0	0	11048	855	30	4	683	4	OR1E1	17	3301440	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08		3301440	77893770	124	123201											
GLP2R	9340	broad.mit.edu	37	chr17	9729469	9729469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccatgggcatccctgCcccctgggggaccagtcctc	12	18	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9729469	A	A	9729469	3	1	142	1	0	0	0	0	1	0	0	0	6517	739	26	3	91	3	GLP2R	17	9729469	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	6428029	9729469	71465741	125	123202											
TUBG1	7283	broad.mit.edu	37	chr17	40762275	40762275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgggggcggcagttgccCaagggggcggaagggaaggg	24	8	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40762275	A	A	40762275	1	1	142	0	1	0	0	0	0	0	0	0	16890	609	21	2		2	TUBG1	17	40762275	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	31032806	40762275	40432935	126	123203											
DYNLL2	140735	broad.mit.edu	37	chr17	56166633	56166633	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaatcctcctcttcaagtCaggctaggtggccatggtga	11	11	3	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56166633	T	T	56166633	3	4	142	1	0	0	0	0	1	0	0	0	4889	838	29	4	269	4	DYNLL2	17	56166633	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	15404358	56166633	25028577	127	123204											
SDK2	54549	broad.mit.edu	37	chr17	71346817	71346817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcttggcgtacttcttGctctggccccggatgatgag	12	11	4	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71346817	T	T	71346817	3	4	142	1	0	0	0	0	1	0	0	0	14082	1310	46	3	663	3	SDK2	17	71346817	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	15180184	71346817	9848393	128	123205											
RPTOR	57521	broad.mit.edu	37	chr17	78516091	78516091	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtcagaccgatgtgtcaCgattaagcgtaactggcaga	11	10	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78516091	T	T	78516091	1	4	142	0	1	0	0	0	0	0	0	0	13776	551	19	4		4	RPTOR	17	78516091	5'Flank	SNP	C	TCGA-49-4512-01A-21D-1855-08	7169274	78516091	2679119	129	123206											
SPIRE1	56907	broad.mit.edu	37	chr18	12495984	12495984	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aataattcattatgatatctCcaatctagagaactatgtcg	5	7	3	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12495984	A	A	12495984	1	1	142	0	1	0	0	0	0	0	0	0	15189	870	30	3		3	SPIRE1	18	12495984	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08		12495984	65581264	130	123207											
MAP2K7	5609	broad.mit.edu	37	chr19	7975197	7975197	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgggcgagatgggcagcgGcacctgcggccaggtgtgga	19	10	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7975197	A	A	7975197	3	1	142	1	0	0	0	0	1	0	0	0	9334	1203	42	4	400	4	MAP2K7	19	7975197	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08		7975197	51153786	131	123208											
PRKCSH	5589	broad.mit.edu	37	chr19	11546862	11546862	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccgctttcttcctgcagCgtgaagacacagcgcatctc	9	14	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11546862	T	T	11546862	1	4	142	0	1	0	0	0	0	0	0	0	12622	782	27	4		4	PRKCSH	19	11546862	5'UTR	SNP	C	TCGA-49-4512-01A-21D-1855-08	3571665	11546862	47582121	132	123209											
EPS15L1	58513	broad.mit.edu	37	chr19	16548580	16548580	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaggacttggacactcaCaaatttaggcggtggcatgc	12	8	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16548580	T	T	16548580	5	4	142	1	0	0	0	0	0	0	1	0	5235	492	17	4	2360	4	EPS15L1	19	16548580	Splice_Site	SNP	C	TCGA-49-4512-01A-21D-1855-08	5001718	16548580	42580403	133	123210											
ZNF253	56242	broad.mit.edu	37	chr19	19989281	19989281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaattatgtgtgtgtgtgtGttttccagggaccattgcaa	12	5	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19989281	T	T	19989281	1	4	142	0	1	0	0	0	0	0	0	0	17923	1392	48	3		3	ZNF253	19	19989281	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	3440701	19989281	39139702	134	123211											
GPATCH1	55094	broad.mit.edu	37	chr19	33584407	33584407	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagccaccctccttgatgAcctcataacgccagcaaagt	8	14	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33584407	G	G	33584407	3	3	142	1	0	0	0	0	1	0	0	0	6655	275	10	5	451	5	GPATCH1	19	33584407	Missense_Mutation	SNP	A	TCGA-49-4512-01A-21D-1855-08	13595126	33584407	25544576	135	123212											
GPI	2821	broad.mit.edu	37	chr19	34884093	34884093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagggacagggtttccggCaggaggtggggggcggggtg	23	7	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34884093	A	A	34884093	1	1	142	0	1	0	0	0	0	0	0	0	6676	725	25	3		3	GPI	19	34884093	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	1299686	34884093	24244890	136	123213											
COX6B1	1340	broad.mit.edu	37	chr19	36145570	36145570	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtccctctgccccacatcCtgggtatgtgcctcctgcca	8	18	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36145570	A	A	36145570	2	1	142	1	0	0	0	0	0	0	0	1	3808	668	24	2		2	COX6B1	19	36145570	Silent	SNP	C	TCGA-49-4512-01A-21D-1855-08	1261477	36145570	22983413	137	123214											
RYR1	6261	broad.mit.edu	37	chr19	38959913	38959913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgccctgcccacctgccCtcacccctgcccatccatcc	4	25	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38959913	A	A	38959913	1	1	142	0	1	0	0	0	0	0	0	0	13879	696	24	2		2	RYR1	19	38959913	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	2814343	38959913	20169070	138	123215											
HRC	3270	broad.mit.edu	37	chr19	49657720	49657720	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaatggagacatcatcatCatcatcatcatcatcatcat	3	11	10	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49657720	G	G	49657720	3	3	142	1	0	0	0	0	1	0	0	0	7419	826	29	4	1348	4	HRC	19	49657720	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	10697807	49657720	9471263	139	123216											
LILRA1	11024	broad.mit.edu	37	chr19	55106066	55106066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcatctggagggtcctgGgctgagagctgagatatgtt	18	6	1	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55106066	A	A	55106066	1	1	142	0	1	0	0	0	0	0	0	0	8856	1247	43	4		4	LILRA1	19	55106066	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	5448346	55106066	4022917	140	123217											
PPP1R12C	54776	broad.mit.edu	37	chr19	55606987	55606987	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgctgggagaaggaggaGgtctcagttagagagaaagg	18	4	1	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55606987	A	A	55606987	1	1	142	0	1	0	0	0	0	0	0	0	12457	1015	35	4		4	PPP1R12C	19	55606987	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	500921	55606987	3521996	141	123218											
C20orf132	140699	broad.mit.edu	37	chr20	35748286	35748286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgacctttaagcccTttttcatgtggggagctacc	8	9	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35748286	C	C	35748286	1	2	142	0	1	0	0	0	0	0	0	0	2108	1624	56	5		5	C20orf132	20	35748286	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08		35748286	27277234	142	123219											
PTPRT	11122	broad.mit.edu	37	chr20	40877235	40877235	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataacagaagatccctgctgGacaatgatcaacagagcaaa	8	9	1	4			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40877235	T	T	40877235	1	4	142	0	1	0	0	0	0	0	0	0	12920	1189	41	3		3	PTPRT	20	40877235	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	5128949	40877235	22148285	143	123220											
PTK6	5753	broad.mit.edu	37	chr20	62163804	62163804	+	Intron	DEL	G	-	-													gtgtgtgtgtgtgtagacgtGgggggggggtgtgcacttta							TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62163804	-	-	62163804	6	5	142	0	1	1	0	1	0	0	0	0	12870	1363	47	0		0	PTK6	20	62163804	Intron	DEL	G	TCGA-49-4512-01A-21D-1855-08	21286569	62163804	861716	144	123221											
TMPRSS15	5651	broad.mit.edu	37	chr21	19647371	19647371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtctacccaagaggattaCgcaaataggcaaaaagtaac	9	8	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19647371	T	T	19647371	1	4	142	0	1	0	0	0	0	0	0	0	16369	551	19	4		4	TMPRSS15	21	19647371	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08		19647371	28482524	145	123222											
MX1	4599	broad.mit.edu	37	chr21	42821303	42821303	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccagcaccaaacttcagcActttcctcctggggtgcatc	8	15	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42821303	C	C	42821303	1	2	142	0	1	0	0	0	0	0	0	0	10091	174	6	5		5	MX1	21	42821303	Intron	SNP	A	TCGA-49-4512-01A-21D-1855-08	23173932	42821303	5308592	146	123223											
C22orf43	51233	broad.mit.edu	37	chr22	23959917	23959917	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactcagggagctttgctggAtgtggtatatggaggtggtt	16	5	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23959917	G	G	23959917	1	3	142	0	1	0	0	0	0	0	0	0	2172	348	12	5		5	C22orf43	22	23959917	Intron	SNP	A	TCGA-49-4512-01A-21D-1855-08		23959917	27344649	147	123224											
GRAP2	9402	broad.mit.edu	37	chr22	40361899	40361899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatatctacatctcctgCtcaaagagaactccaccatc	3	15	3	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40361899	A	A	40361899	1	1	142	0	1	0	0	0	0	0	0	0	6820	812	28	3		3	GRAP2	22	40361899	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	16401982	40361899	10942667	148	123225											
MKL1	57591	broad.mit.edu	37	chr22	40859157	40859157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgttagatgcttcccatgGcatactcggtgaacacagcc	9	11	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40859157	A	A	40859157	1	1	142	0	1	0	0	0	0	0	0	0	9694	1218	42	4		4	MKL1	22	40859157	Intron	SNP	G	TCGA-49-4512-01A-21D-1855-08	497258	40859157	10445409	149	123226											
BRD1	23774	broad.mit.edu	37	chr22	50216780	50216780	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgtaaatattcagaggccTccgggtgcagcctggaggcg	14	12	1	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50216780	G	G	50216780	2	3	142	1	0	0	0	0	0	0	0	1	1510	1550	54	5		5	BRD1	22	50216780	Silent	SNP	T	TCGA-49-4512-01A-21D-1855-08	9357623	50216780	1087786	150	123227											
ARSD	414	broad.mit.edu	37	chrX	2828021	2828021	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcccatgcccttcccacCtgtaagtagaagacatcgtt	6	15	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2828021	G	G	2828021	5	3	142	1	0	0	0	0	0	0	1	0	993	695	24	4	658	4	ARSD	23	2828021	Splice_Site	SNP	C	TCGA-49-4512-01A-21D-1855-08		2828021	152442539	151	123228											
RPS6KA3	6197	broad.mit.edu	37	chrX	20195194	20195194	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaaactgtggcattccaAgtttggctctaaataataaa	6	7	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20195194	G	G	20195194	3	3	142	1	0	0	0	0	1	0	0	0	13763	72	3	5	1416	5	RPS6KA3	23	20195194	Missense_Mutation	SNP	A	TCGA-49-4512-01A-21D-1855-08	17367173	20195194	135075366	152	123229											
MED14	9282	broad.mit.edu	37	chrX	40569230	40569230	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatattgagatcttttaCcttcatggctctttctacta	4	8	4	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40569230	A	A	40569230	5	1	142	1	0	0	0	0	0	0	1	0	9525	521	18	3	3282	3	MED14	23	40569230	Splice_Site	SNP	C	TCGA-49-4512-01A-21D-1855-08	20374036	40569230	114701330	153	123230											
CDK16	5127	broad.mit.edu	37	chrX	47085945	47085945	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccgagactttgcccatgActccctcattctagctgtcc	6	17	2	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47085945	G	G	47085945	1	3	142	0	1	0	0	0	0	0	0	0	3162	290	10	5		5	CDK16	23	47085945	Intron	SNP	A	TCGA-49-4512-01A-21D-1855-08	6516715	47085945	108184615	154	123231											
FAM120C	54954	broad.mit.edu	37	chrX	54209079	54209079	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcggcctggcaccgacGgccccactcggccagccggt	13	20	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54209079	A	A	54209079	3	1	142	1	0	0	0	0	1	0	0	0	5464	1116	39	4	2823	4	FAM120C	23	54209079	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	7123134	54209079	101061481	155	123232											
AR	367	broad.mit.edu	37	chrX	66931530	66931530	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtgggccaaggccttgccTggtaaggaaaagggaagtgg	17	6	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66931530	A	A	66931530	2	1	142	1	0	0	0	0	0	0	0	1	838	1594	55	5		5	AR	23	66931530	Silent	SNP	T	TCGA-49-4512-01A-21D-1855-08	12722451	66931530	88339030	156	123233											
TAF1	6872	broad.mit.edu	37	chrX	70613126	70613126	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtatatttatatTtgtgtgtggctatttgtctc	11	3	1	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70613126	G	G	70613126	1	3	142	0	1	0	0	0	0	0	0	0	15632	1856	64	5		5	TAF1	23	70613126	Intron	SNP	T	TCGA-49-4512-01A-21D-1855-08	3681596	70613126	84657434	157	123234											
ARMCX2	9823	broad.mit.edu	37	chrX	100911744	100911744	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcctccacctttgggtacCgctccagtcgctgatgtggc	11	14	0	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100911744	A	A	100911744	2	1	142	1	0	0	0	0	0	0	0	1	964	639	23	1		1	ARMCX2	23	100911744	Silent	SNP	C	TCGA-49-4512-01A-21D-1855-08	30298618	100911744	54358816	158	123235											
ODZ1	10178	broad.mit.edu	37	chrX	123654641	123654641	+	Intron	DEL	T	-	-													tcctcctgtacaacctgaaaTaaaaaaaaaaaaaaaaagcc					rs150111932		TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123654641	-	-	123654641	6	5	142	0	1	1	0	1	0	0	0	0	10929	1421	49	0		0	ODZ1	23	123654641	Intron	DEL	T	TCGA-49-4512-01A-21D-1855-08	22742897	123654641	31615919	159	123236											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298988	125298988	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtcaggcacacattctctCggcagtagggcagcctgatg	13	11	2	1			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125298988	T	T	125298988	3	4	142	1	0	0	0	0	1	0	0	0	4298	884	31	4	475	4	DCAF12L2	23	125298988	Missense_Mutation	SNP	C	TCGA-49-4512-01A-21D-1855-08	1644347	125298988	29971572	160	123237											
F9	2158	broad.mit.edu	37	chrX	138630531	138630531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcttttagatgtaacatGtaacattaagaatggcagat	8	5	1	3			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138630531	A	A	138630531	3	1	142	1	0	0	0	0	1	0	0	0	5397	1377	48	4	419	4	F9	23	138630531	Missense_Mutation	SNP	G	TCGA-49-4512-01A-21D-1855-08	13331543	138630531	16640029	161	123238											
CD99L2	83692	broad.mit.edu	37	chrX	149984389	149984389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttctgcacacatggggCttaaaactgtaggtagttca	10	7	2	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149984389	A	A	149984389	1	1	142	0	1	0	0	0	0	0	0	0	3081	812	28	3		3	CD99L2	23	149984389	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	11353858	149984389	5286171	162	123239											
GABRQ	55879	broad.mit.edu	37	chrX	151820360	151820360	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgcgcacccacacatgcgCgcacacgcaaaacacacaca	6	18	0	0			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151820360	T	T	151820360	1	4	142	0	1	0	0	0	0	0	0	0	6235	783	27	4		4	GABRQ	23	151820360	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	1835971	151820360	3450200	163	123240											
PLXNB3	5365	broad.mit.edu	37	chrX	153037540	153037540	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccagagataaggaaggcCtgtggccaagaaacctgggg	14	10	0	2			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153037540	T	T	153037540	1	4	142	0	1	0	0	0	0	0	0	0	12220	696	24	4		4	PLXNB3	23	153037540	Intron	SNP	C	TCGA-49-4512-01A-21D-1855-08	1217180	153037540	2233020	164	123241											
AURKAIP1	54998	broad.mit.edu	37	chr1	1309389	1309389	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggccactcacctgcttgcgTctcaggcgtccctcctggac	11	17	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1309389	C	C	1309389	2	2	143	1	0	0	0	0	0	0	0	1	1227	1664	58	5		5	AURKAIP1	1	1309389	Silent	SNP	T	TCGA-49-4514-01A-21D-1855-08		1309389	247941232	1	123242											
ATAD3C	219293	broad.mit.edu	37	chr1	1390998	1390998	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctggtggcgcccaggatCttttgggtcctgagatgcga	14	11	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1390998	T	T	1390998	1	4	143	0	1	0	0	0	0	0	0	0	1079	928	32	4		4	ATAD3C	1	1390998	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	81609	1390998	247859623	2	123243											
MMEL1	79258	broad.mit.edu	37	chr1	2526337	2526337	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctgagaagttcagctacGggagaggggcagtcactgcc	14	11	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2526337	C	C	2526337	1	2	143	0	1	0	0	0	0	0	0	0	9739	1131	39	4		4	MMEL1	1	2526337	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1135339	2526337	246724284	3	123244											
CLCN6	1185	broad.mit.edu	37	chr1	11867151	11867151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctccttccactcctaaccActaaaaaaggctccctctgc	4	18	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11867151	G	G	11867151	1	3	143	0	1	0	0	0	0	0	0	0	3498	174	6	5		5	CLCN6	1	11867151	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	9340814	11867151	237383470	4	123245											
DHRS3	9249	broad.mit.edu	37	chr1	12640463	12640463	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attctgccataagcagagctCtcttccaggccacatgagaa	8	12	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12640463	G	G	12640463	1	3	143	0	1	0	0	0	0	0	0	0	4531	928	32	4		4	DHRS3	1	12640463	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	773312	12640463	236610158	5	123246											
PRAMEF5	343068	broad.mit.edu	37	chr1	13052978	13052978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcaggttctccagggtGgccatggagatgggatttcc	14	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13052978	T	T	13052978	1	4	143	0	1	0	0	0	0	0	0	0	12542	1363	47	2		2	PRAMEF5	1	13052978	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	412515	13052978	236197643	6	123247											
CLCNKB	1188	broad.mit.edu	37	chr1	16375117	16375117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccccctgggtccctcaagCtcctcccctcacaccctggg	8	22	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16375117	A	A	16375117	1	1	143	0	1	0	0	0	0	0	0	0	3501	812	28	3		3	CLCNKB	1	16375117	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3322139	16375117	232875504	7	123248											
NBPF1	55672	broad.mit.edu	37	chr1	16890827	16890827	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgaggtaaaaaaaaaaaaTtattgcctttatgttgggat	8	2	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16890827	A	A	16890827	1	1	143	0	1	0	0	0	0	0	0	0	10286	1508	52	5		5	NBPF1	1	16890827	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	515710	16890827	232359794	8	123249											
IGSF21	84966	broad.mit.edu	37	chr1	18691759	18691759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaatcgacgcagtgcccCtatcagagccaccagctgcg	9	16	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18691759	A	A	18691759	3	1	143	1	0	0	0	0	1	0	0	0	7669	680	24	2	605	2	IGSF21	1	18691759	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1800932	18691759	230558862	9	123250											
HDAC1	3065	broad.mit.edu	37	chr1	32793077	32793077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtaagctgggagctagcGcccttggcacgtcccatccc	12	16	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32793077	T	T	32793077	1	4	143	0	1	0	0	0	0	0	0	0	7071	1102	38	3		3	HDAC1	1	32793077	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	14101318	32793077	216457544	10	123251											
MRPS15	64960	broad.mit.edu	37	chr1	36921528	36921528	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgagtctcctggaaaaccTggggatgaaaaggggcagaa	14	6	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36921528	A	A	36921528	1	1	143	0	1	0	0	0	0	0	0	0	9919	1594	55	5		5	MRPS15	1	36921528	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	4128451	36921528	212329093	11	123252											
PLK3	1263	broad.mit.edu	37	chr1	45267448	45267448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcctgagcctggaggatGggaggttggggagggaggga	22	5	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45267448	T	T	45267448	1	4	143	0	1	0	0	0	0	0	0	0	12192	1363	47	2		2	PLK3	1	45267448	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	8345920	45267448	203983173	12	123253											
NRD1	4898	broad.mit.edu	37	chr1	52260370	52260370	+	Intron	SNP	C	T	T													tcaattgccttgtacaccagCctcaaaaaaatctactacaa							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52260370	T	T	52260370	1	4	143	0	1	0	0	0	0	0	0	0	10740	754	26	4		4	NRD1	1	52260370	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	6992922	52260370	196990251	13	123254	533	2									
NRD1	4898	broad.mit.edu	37	chr1	52260373	52260373	+	Intron	SNP	C	G	G													attgccttgtacaccagcctCaaaaaaatctactacaagta							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52260373	G	G	52260373	1	3	143	0	1	0	0	0	0	0	0	0	10740	841	29	4		4	NRD1	1	52260373	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3	52260373	196990248	14	123255	533	2									
SCP2	6342	broad.mit.edu	37	chr1	53446082	53446082	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttaggttggctttgatatGagtaaagaagctgcaagaaa	11	3	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53446082	A	A	53446082	3	1	143	1	0	0	0	0	1	0	0	0	14047	1290	45	4	878	4	SCP2	1	53446082	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1185709	53446082	195804539	15	123256											
MRPL37	51253	broad.mit.edu	37	chr1	54665901	54665901	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtccaggtggaggtcttgAggctatcagatcggtatggc	17	7	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54665901	G	G	54665901	1	3	143	0	1	0	0	0	0	0	0	0	9894	319	11	5		5	MRPL37	1	54665901	5'UTR	SNP	A	TCGA-49-4514-01A-21D-1855-08	1219819	54665901	194584720	16	123257											
USP24	23358	broad.mit.edu	37	chr1	55534842	55534846	+	Intron	DEL	TTGTG	-	-													aaaaggttttctatgctgacTtgtgttctgcaatttaaaca					rs145466302	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55534846	-	-	55534842	6	5	143	0	1	1	0	1	0	0	0	0	17181	1624	56	0		0	USP24	1	55534842	Intron	DEL	TTGTG	TCGA-49-4514-01A-21D-1855-08	868941	55534842	193715779	17	123258											
PRKAA2	5563	broad.mit.edu	37	chr1	57173139	57173139	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataaattgctcttctttggtCcatttcagatgaagtagtgg	9	6	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57173139	A	A	57173139	1	1	143	0	1	0	0	0	0	0	0	0	12600	870	30	3		3	PRKAA2	1	57173139	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1638297	57173139	192077482	18	123259											
CACHD1	57685	broad.mit.edu	37	chr1	65098409	65098409	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggtcatcctcagcgccAtcgatgaacatgacaaggtg	10	12	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65098409	G	G	65098409	3	3	143	1	0	0	0	0	1	0	0	0	2563	217	8	5	641	5	CACHD1	1	65098409	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	7925270	65098409	184152212	19	123260											
LEPR	3953	broad.mit.edu	37	chr1	66067031	66067031	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtggtacaaattacttacaGaatgttttgtcttcatctga	7	6	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66067031	C	C	66067031	1	2	143	0	1	0	0	0	0	0	0	0	8800	957	33	4		4	LEPR	1	66067031	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	968622	66067031	183183590	20	123261											
SGIP1	84251	broad.mit.edu	37	chr1	67147549	67147549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcaactactttaaccaCaggaaatgaccagtcagcca	5	11	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67147549	A	A	67147549	1	1	143	0	1	0	0	0	0	0	0	0	14319	493	17	3		3	SGIP1	1	67147549	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1080518	67147549	182103072	21	123262											
ANKRD13C	81573	broad.mit.edu	37	chr1	70819936	70819936	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtgatggttactgaagatCttatgacaagctttgccgcc	11	8	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70819936	T	T	70819936	2	4	143	1	0	0	0	0	0	0	0	1	643	912	32	4		4	ANKRD13C	1	70819936	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	3672387	70819936	178430685	22	123263											
SLC44A5	204962	broad.mit.edu	37	chr1	75862186	75862186	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaatatttcgctattcctaGattttaaaagaatcacatat	3	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75862186	T	T	75862186	1	4	143	0	1	0	0	0	0	0	0	0	14753	957	33	3		3	SLC44A5	1	75862186	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5042250	75862186	173388435	23	123264											
USP33	23032	broad.mit.edu	37	chr1	78166924	78166924	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaactagaacgtaagatcCctgaggacaggatctttttc	8	8	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78166924	G	G	78166924	1	3	143	0	1	0	0	0	0	0	0	0	17191	638	22	4		4	USP33	1	78166924	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2304738	78166924	171083697	24	123265											
IFI44L	10964	broad.mit.edu	37	chr1	79101010	79101010	+	Intron	DEL	T	-	-													gaacctttacacttaatgtaTttttttaacagtataggata							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79101010	-	-	79101010	6	5	143	0	1	1	0	1	0	0	0	0	7588	1508	52	0		0	IFI44L	1	79101010	Intron	DEL	T	TCGA-49-4514-01A-21D-1855-08	934086	79101010	170149611	25	123266											
ELTD1	64123	broad.mit.edu	37	chr1	79411949	79411949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaattctaacttagataaCcgaacttacctatacagacg	4	10	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79411949	A	A	79411949	1	1	143	0	1	0	0	0	0	0	0	0	5126	522	18	3		3	ELTD1	1	79411949	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	310939	79411949	169838672	26	123267											
LPHN2	23266	broad.mit.edu	37	chr1	82434718	82434718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcaaaatttatttttgGtattgagccttttttgaaca	7	4	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82434718	T	T	82434718	1	4	143	0	1	0	0	0	0	0	0	0	9003	1276	44	3		3	LPHN2	1	82434718	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	3022769	82434718	166815903	27	123268											
ABCA4	24	broad.mit.edu	37	chr1	94577263	94577263	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccttcattctcagcatttAagaagcaggagcatctcatg	7	11	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94577263	T	T	94577263	1	4	143	0	1	0	0	0	0	0	0	0	34	377	13	5		5	ABCA4	1	94577263	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	12142545	94577263	154673358	28	123269											
AGL	178	broad.mit.edu	37	chr1	100356810	100356810	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggcagaaataagaccaaaGaatgacttggggcatccttt	10	7	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100356810	T	T	100356810	3	4	143	1	0	0	0	0	1	0	0	0	384	933	33	3	2998	3	AGL	1	100356810	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	5779547	100356810	148893811	29	123270											
RNF115	27246	broad.mit.edu	37	chr1	145663206	145663206	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcaagattttagaccCtttctaagtagcagtccact	5	9	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145663206	G	G	145663206	2	3	143	1	0	0	0	0	0	0	0	1	13541	668	24	4		4	RNF115	1	145663206	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	45306396	145663206	103587415	30	123271											
PRPF3	9129	broad.mit.edu	37	chr1	150325221	150325221	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcagctgggcacatgtctCacaaatgttactaggtcttc	9	10	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150325221	G	G	150325221	1	3	143	0	1	0	0	0	0	0	0	0	12671	841	29	4		4	PRPF3	1	150325221	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	4662015	150325221	98925400	31	123272											
PRUNE	58497	broad.mit.edu	37	chr1	150990709	150990709	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactaaaaattccttctctGcagcattgcatctagaaata	6	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150990709	A	A	150990709	1	1	143	0	1	0	0	0	0	0	0	0	12746	1334	46	4		4	PRUNE	1	150990709	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	665488	150990709	98259912	32	123273											
FLG	2312	broad.mit.edu	37	chr1	152276956	152276956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcatcagaccttccctggGatgtggtgtggctgtgatgg	16	8	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152276956	T	T	152276956	3	4	143	1	0	0	0	0	1	0	0	0	5979	1174	41	3	1783	3	FLG	1	152276956	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1286247	152276956	96973665	33	123274											
GATAD2B	57459	broad.mit.edu	37	chr1	153784620	153784620	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaatttcctgttgggagtCatcacatcaggtgattgagc	10	8	4	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153784620	T	T	153784620	1	4	143	0	1	0	0	0	0	0	0	0	6323	841	29	4		4	GATAD2B	1	153784620	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1507664	153784620	95466001	34	123275											
HAX1	10456	broad.mit.edu	37	chr1	154247616	154247616	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctcctgcttcttcatctCtctgctcttccagatcttga	4	15	7	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154247616	G	G	154247616	1	3	143	0	1	0	0	0	0	0	0	0	7041	928	32	4		4	HAX1	1	154247616	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	462996	154247616	95003005	35	123276											
RIT1	6016	broad.mit.edu	37	chr1	155874261	155874261	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaacccttctcctgccctCatatactggtcccgcatggc	6	16	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155874261	A	A	155874261	3	1	143	1	0	0	0	0	1	0	0	0	13497	826	29	3	397	3	RIT1	1	155874261	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1626645	155874261	93376360	36	123277											
RIT1	6016	broad.mit.edu	37	chr1	155880281	155880281	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgggaatcggtggctgatGaactgcatggtcatggcttc	14	8	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155880281	A	A	155880281	2	1	143	1	0	0	0	0	0	0	0	1	13497	1281	45	4		4	RIT1	1	155880281	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	6020	155880281	93370340	37	123278											
ARHGEF2	9181	broad.mit.edu	37	chr1	155932075	155932075	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacagaaaggcctggggcctGagctctggtgctggccctgg	16	11	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155932075	C	C	155932075	1	2	143	0	1	0	0	0	0	0	0	0	905	1305	45	4		4	ARHGEF2	1	155932075	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	51794	155932075	93318546	38	123279											
INSRR	3645	broad.mit.edu	37	chr1	156814999	156814999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcagcaccgctcgctcaCggggcaccttgtcctcctgg	11	18	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156814999	A	A	156814999	3	1	143	1	0	0	0	0	1	0	0	0	7844	536	19	3	1630	3	INSRR	1	156814999	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	882924	156814999	92435622	39	123280											
FCRL2	79368	broad.mit.edu	37	chr1	157716565	157716565	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtagatgacttgggagtcCtgggagagacacacaggaat	15	6	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157716565	A	A	157716565	1	1	143	0	1	0	0	0	0	0	0	0	5852	695	24	2		2	FCRL2	1	157716565	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	901566	157716565	91534056	40	123281											
CD5L	922	broad.mit.edu	37	chr1	157804207	157804207	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggcattaccttcacattcGacccacgtgtcttcatcatg	6	14	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157804207	C	C	157804207	2	2	143	1	0	0	0	0	0	0	0	1	3057	1045	37	4		4	CD5L	1	157804207	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	87642	157804207	91446414	41	123282											
KIRREL	55243	broad.mit.edu	37	chr1	158064211	158064211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggggccagggcatgaGggctggtgggccagtgggtt	23	6	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158064211	T	T	158064211	1	4	143	0	1	0	0	0	0	0	0	0	8395	1015	35	2		2	KIRREL	1	158064211	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	260004	158064211	91186410	42	123283											
SPTA1	6708	broad.mit.edu	37	chr1	158596722	158596722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcagctattgccttagCcagagaaggggtcttttcat	10	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158596722	A	A	158596722	3	1	143	1	0	0	0	0	1	0	0	0	15234	739	26	3	1567	3	SPTA1	1	158596722	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	532511	158596722	90653899	43	123284											
SPTA1	6708	broad.mit.edu	37	chr1	158612572	158612572	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaacaagctcggaatggtGaaattttccaagattcctat	7	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158612572	T	T	158612572	1	4	143	0	1	0	0	0	0	0	0	0	15234	1305	45	3		3	SPTA1	1	158612572	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	15850	158612572	90638049	44	123285											
CADM3	57863	broad.mit.edu	37	chr1	159169551	159169551	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttccagaccccagtccGgtgccctcctcctccagcac	6	20	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159169551	T	T	159169551	2	4	143	1	0	0	0	0	0	0	0	1	2594	1103	39	1		1	CADM3	1	159169551	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	556979	159169551	90081070	45	123286											
DARC	2532	broad.mit.edu	37	chr1	159175986	159175986	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggcctggtttattttcTggtggcctcatggggtggtt	16	6	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159175986	C	C	159175986	3	2	143	1	0	0	0	0	1	0	0	0	4273	1580	55	5	790	5	DARC	1	159175986	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	6435	159175986	90074635	46	123287											
VANGL2	57216	broad.mit.edu	37	chr1	160385936	160385936	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaggctcccggggagccCctgctggacaatgagtccac	12	15	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160385936	A	A	160385936	2	1	143	1	0	0	0	0	0	0	0	1	17247	610	22	2		2	VANGL2	1	160385936	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	1209950	160385936	88864685	47	123288											
TMCO1	54499	broad.mit.edu	37	chr1	165788947	165788947	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagacagcaaaaagatccttGaatggaaagccaaatctcgc	8	9	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165788947	C	C	165788947	1	2	143	0	1	0	0	0	0	0	0	0	16118	1305	45	4		4	TMCO1	1	165788947	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5403011	165788947	83461674	48	123289											
F5	2153	broad.mit.edu	37	chr1	169495043	169495043	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgcctttgtcacatcagaGttcttagagttgaatatttc	7	7	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169495043	A	A	169495043	1	1	143	0	1	0	0	0	0	0	0	0	5391	1044	36	4		4	F5	1	169495043	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	3706096	169495043	79755578	49	123290											
SCYL3	57147	broad.mit.edu	37	chr1	169839332	169839332	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagtcctttgaattccacaCagaatacgtcatggatgatt	8	8	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169839332	T	T	169839332	1	4	143	0	1	0	0	0	0	0	0	0	14062	493	17	4		4	SCYL3	1	169839332	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	344289	169839332	79411289	50	123291											
PRRX1	5396	broad.mit.edu	37	chr1	170699588	170699588	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttgcagttctagaaatttCagcagtgaagtcctcaagtg	11	7	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170699588	T	T	170699588	1	4	143	0	1	0	0	0	0	0	0	0	12718	841	29	4		4	PRRX1	1	170699588	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	860256	170699588	78551033	51	123292											
ASTN1	460	broad.mit.edu	37	chr1	176934459	176934459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggcacagtgctaggtgGtagacacccagccatccagg	12	12	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176934459	T	T	176934459	1	4	143	0	1	0	0	0	0	0	0	0	1068	1276	44	3		3	ASTN1	1	176934459	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6234871	176934459	72316162	52	123293											
C1orf125	126859	broad.mit.edu	37	chr1	179425799	179425799	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagctgccaccaaagccatCatgaccactgaagtttcctc	6	15	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179425799	T	T	179425799	1	4	143	0	1	0	0	0	0	0	0	0	2013	841	29	4		4	C1orf125	1	179425799	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2491340	179425799	69824822	53	123294											
TDRD5	163589	broad.mit.edu	37	chr1	179660081	179660081	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaaggatggaagcatgaggGagggagggaggagggagaaa	21	1	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179660081	A	A	179660081	1	1	143	0	1	0	0	0	0	0	0	0	15855	1189	41	4		4	TDRD5	1	179660081	3'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	234282	179660081	69590540	54	123295											
HMCN1	83872	broad.mit.edu	37	chr1	186023062	186023062	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcagcactctattcatGtgtggcgtcgaatgttgctg	12	8	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186023062	T	T	186023062	3	4	143	1	0	0	0	0	1	0	0	0	7287	1377	48	3	6980	3	HMCN1	1	186023062	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	6362981	186023062	63227559	55	123296											
PLA2G4A	5321	broad.mit.edu	37	chr1	186919766	186919767	+	Intron	INS	-	TT	TT													tgacacctgaaatgcttcaaINStttttttgttttcttttcac							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	186919767	TT	TT	186919766	6	5	143	0	1	1	1	0	0	0	0	0	12096	116	4	0		0	PLA2G4A	1	186919766	Intron	INS	-	TCGA-49-4514-01A-21D-1855-08	896704	186919766	62330855	56	123297											
KCNT2	343450	broad.mit.edu	37	chr1	196459025	196459025	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattatgtataataagcagCttagtaatttgagagaaaaa	9	2	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196459025	A	A	196459025	3	1	143	1	0	0	0	0	1	0	0	0	8162	797	28	3	3293	3	KCNT2	1	196459025	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	9539259	196459025	52791596	57	123298											
F13B	2165	broad.mit.edu	37	chr1	197021794	197021794	+	Frame_Shift_Del	DEL	C	-	-													acataaaggatatttcacttCtcctctgttgcactgcacag							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197021794	-	-	197021794	7	5	143	1	0	1	0	1	0	0	0	0	5384	922	32	0	476	0	F13B	1	197021794	Frame_Shift_Del	DEL	C	TCGA-49-4514-01A-21D-1855-08	562769	197021794	52228827	58	123299											
F13B	2165	broad.mit.edu	37	chr1	197021821	197021821	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgcactgcacagataattCagacaatggggttaatggag	12	6	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197021821	A	A	197021821	4	1	143	1	0	0	0	0	0	1	0	0	5384	835	29	3	503	3	F13B	1	197021821	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	27	197021821	52228800	59	123300											
ASPM	259266	broad.mit.edu	37	chr1	197113130	197113130	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttcctagtaatatagctTggtgtttcagaacatcattt	6	7	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197113130	C	C	197113130	3	2	143	1	0	0	0	0	1	0	0	0	1060	1812	63	5	10143	5	ASPM	1	197113130	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	91309	197113130	52137491	60	123301											
KIF14	9928	broad.mit.edu	37	chr1	200574420	200574420	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaataccttggtctgGgtcatcaccagggtgaaaac	9	8	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200574420	T	T	200574420	2	4	143	1	0	0	0	0	0	0	0	1	8346	1219	43	2		2	KIF14	1	200574420	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	3461290	200574420	48676201	61	123302											
C1orf106	55765	broad.mit.edu	37	chr1	200880411	200880411	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcacccacgcagcccggcaGagggtttgttggtttgcttt	14	11	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200880411	C	C	200880411	1	2	143	0	1	0	0	0	0	0	0	0	2000	957	33	4		4	C1orf106	1	200880411	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	305991	200880411	48370210	62	123303											
CACNA1S	779	broad.mit.edu	37	chr1	201022790	201022790	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagggcggggagggagGtgcactgtgtgttttgggga	24	4	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201022790	A	A	201022790	1	1	143	0	1	0	0	0	0	0	0	0	2573	1276	44	4		4	CACNA1S	1	201022790	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	142379	201022790	48227831	63	123304											
TMEM9	252839	broad.mit.edu	37	chr1	201104701	201104701	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaagggaagactggaacCgagggaagggagaagtagcc	16	5	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201104701	A	A	201104701	1	1	143	0	1	0	0	0	0	0	0	0	16340	667	23	1		1	TMEM9	1	201104701	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	81911	201104701	48145920	64	123305											
IGFN1	91156	broad.mit.edu	37	chr1	201184625	201184625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctatattccccaggtgcCcagtgccctggtcttccttg	8	14	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201184625	A	A	201184625	1	1	143	0	1	0	0	0	0	0	0	0	7660	638	22	2		2	IGFN1	1	201184625	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	79924	201184625	48065996	65	123306											
MFSD4	148808	broad.mit.edu	37	chr1	205567043	205567043	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgacaggtgagaagaTgcagatagccaccttctgaa	10	10	2	5			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205567043	C	C	205567043	1	2	143	0	1	0	0	0	0	0	0	0	9626	1479	51	5		5	MFSD4	1	205567043	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	4382418	205567043	43683578	66	123307											
SLC41A1	254428	broad.mit.edu	37	chr1	205765991	205765991	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaccaaccccttaagtcctCttctcctgtccctttccttc	2	18	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205765991	G	G	205765991	1	3	143	0	1	0	0	0	0	0	0	0	14743	928	32	4		4	SLC41A1	1	205765991	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	198948	205765991	43484630	67	123308											
PLXNA2	5362	broad.mit.edu	37	chr1	208276662	208276662	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggtgtgtgtcacacagtCctgtgtgtactcacacttgc	11	11	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208276662	A	A	208276662	1	1	143	0	1	0	0	0	0	0	0	0	12215	870	30	3		3	PLXNA2	1	208276662	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2510671	208276662	40973959	68	123309											
PTPN14	5784	broad.mit.edu	37	chr1	214656221	214656221	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatatttcttgggatctcagGaagattcatattctttacag	7	6	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214656221	A	A	214656221	1	1	143	0	1	0	0	0	0	0	0	0	12889	1189	41	4		4	PTPN14	1	214656221	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6379559	214656221	34594400	69	123310											
PTPN14	5784	broad.mit.edu	37	chr1	214705599	214705599	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgggctctgtccagcCgcccagctggtcaacagcgt	12	16	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214705599	A	A	214705599	1	1	143	0	1	0	0	0	0	0	0	0	12889	667	23	1		1	PTPN14	1	214705599	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	49378	214705599	34545022	70	123311											
USH2A	7399	broad.mit.edu	37	chr1	215972398	215972398	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaggtggagtacggcattCtgccacagcaggaatcacca	12	11	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215972398	T	T	215972398	3	4	143	1	0	0	0	0	1	0	0	0	17162	913	32	4	5891	4	USH2A	1	215972398	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1266799	215972398	33278223	71	123312											
USH2A	7399	broad.mit.edu	37	chr1	216496818	216496818	+	Frame_Shift_Del	DEL	C	-	-													caaaattcataataatacctCccactaatggtgatttcgtc							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216496818	-	-	216496818	7	5	143	1	0	1	0	1	0	0	0	0	17162	842	30	0	14334	0	USH2A	1	216496818	Frame_Shift_Del	DEL	C	TCGA-49-4514-01A-21D-1855-08	524420	216496818	32753803	72	123313											
ESRRG	2104	broad.mit.edu	37	chr1	216692692	216692692	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagagaccggtatacgacacCaaggatcaaaatttccatcc	7	11	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216692692	G	G	216692692	3	3	143	1	0	0	0	0	1	0	0	0	5304	594	21	4	450	4	ESRRG	1	216692692	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	195874	216692692	32557929	73	123314											
OBSCN	84033	broad.mit.edu	37	chr1	228432156	228432156	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagctcaaaagtgggcaTggaggtcaaagggtgcacac	13	10	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228432156	C	C	228432156	3	2	143	1	0	0	0	0	1	0	0	0	10907	1464	51	5	3403	5	OBSCN	1	228432156	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	11739464	228432156	20818465	74	123315											
OBSCN	84033	broad.mit.edu	37	chr1	228494928	228494928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggtcagcggcaagggGcactaagcatcccttcctgc	11	13	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228494928	T	T	228494928	1	4	143	0	1	0	0	0	0	0	0	0	10907	1218	42	3		3	OBSCN	1	228494928	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	62772	228494928	20755693	75	123316											
SIPA1L2	57568	broad.mit.edu	37	chr1	232564316	232564316	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctcactatacatcctgttGaaaacaatcagaatggaaat	5	8	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232564316	A	A	232564316	1	1	143	0	1	0	0	0	0	0	0	0	14443	1305	45	4		4	SIPA1L2	1	232564316	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	4069388	232564316	16686305	76	123317											
KIAA1804	84451	broad.mit.edu	37	chr1	233518100	233518100	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgcactgccactctgCccctcacctgctcctcacag	6	21	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233518100	T	T	233518100	2	4	143	1	0	0	0	0	0	0	0	1	8329	747	26	4		4	KIAA1804	1	233518100	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	953784	233518100	15732521	77	123318											
LYST	1130	broad.mit.edu	37	chr1	235972070	235972070	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttccacaacaaatcttcaGatccactgctgggcaggatc	7	12	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235972070	C	C	235972070	3	2	143	1	0	0	0	0	1	0	0	0	9216	942	33	4	9553	4	LYST	1	235972070	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2453970	235972070	13278551	78	123319											
RYR2	6262	broad.mit.edu	37	chr1	237919600	237919600	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgttcaggaaaaagaaatgGaaaagcaaaagcttctatac	9	5	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237919600	A	A	237919600	3	1	143	1	0	0	0	0	1	0	0	0	13880	1175	41	4	11480	4	RYR2	1	237919600	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1947530	237919600	11331021	79	123320											
FMN2	56776	broad.mit.edu	37	chr1	240305890	240305890	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaattcccccggaagtctgCagctgtgtccacccttggca	9	15	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240305890	T	T	240305890	1	4	143	0	1	0	0	0	0	0	0	0	6008	725	25	4		4	FMN2	1	240305890	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2386290	240305890	8944731	80	123321											
RGS7	6000	broad.mit.edu	37	chr1	241099977	241099977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaagtagccgtgggcagCcattaatgttcccaaatgga	11	8	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241099977	A	A	241099977	3	1	143	1	0	0	0	0	1	0	0	0	13419	739	26	3	1263	3	RGS7	1	241099977	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	794087	241099977	8150644	81	123322											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242159524	242159524	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccctgggggctgctgactCcaggcagccaaatgtctcct	11	14	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242159524	A	A	242159524	4	1	143	1	0	0	0	0	0	1	0	0	9325	864	30	3	62	3	MAP1LC3C	1	242159524	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1059547	242159524	7091097	82	123323											
CNST	163882	broad.mit.edu	37	chr1	246829096	246829096	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actgcattatactgcactttCggtgacatggagtcacctgt	9	10	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246829096	T	T	246829096	2	4	143	1	0	0	0	0	0	0	0	1	3666	883	31	4		4	CNST	1	246829096	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	4669572	246829096	2421525	83	123324											
OR2C3	81472	broad.mit.edu	37	chr1	247694862	247694862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagtctctaaatttgcgCcagcttgcctgcagagccac	10	13	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247694862	A	A	247694862	3	1	143	1	0	0	0	0	1	0	0	0	11087	739	26	3	14	3	OR2C3	1	247694862	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	865766	247694862	1555759	84	123325											
OR13G1	441933	broad.mit.edu	37	chr1	247836020	247836020	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtggtgaagagaaccatCtcagctcccagagaccatgt	11	10	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247836020	G	G	247836020	3	3	143	1	0	0	0	0	1	0	0	0	11036	912	32	4	603	4	OR13G1	1	247836020	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	141158	247836020	1414601	85	123326											
SULT6B1	391365	broad.mit.edu	37	chr2	37406698	37406698	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaaaagatactgctgtAtctttagggtttcgaaatat	8	5	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37406698	T	T	37406698	3	4	143	1	0	0	0	0	1	0	0	0	15502	446	16	5	495	5	SULT6B1	2	37406698	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08		37406698	205792675	86	123327											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48818749	48818749	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcaagagaaatgttcaatGgccattaaaatactttgact	7	6	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48818749	A	A	48818749	1	1	143	0	1	0	0	0	0	0	0	0	15435	1363	47	4		4	STON1-GTF2A1L	2	48818749	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	11412051	48818749	194380624	87	123328											
NRXN1	9378	broad.mit.edu	37	chr2	50692738	50692738	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaacttgggttctttaaaaGaatccaaaagcattttatac	6	6	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50692738	A	A	50692738	1	1	143	0	1	0	0	0	0	0	0	0	10760	957	33	4		4	NRXN1	2	50692738	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1873989	50692738	192506635	88	123329											
NRXN1	9378	broad.mit.edu	37	chr2	50850703	50850703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatggggttttgagacaagtCgtagcagaagtattcagatc	12	5	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50850703	A	A	50850703	3	1	143	1	0	0	0	0	1	0	0	0	10760	884	31	3	3996	3	NRXN1	2	50850703	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	157965	50850703	192348670	89	123330											
NRXN1	9378	broad.mit.edu	37	chr2	51056826	51056826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgacacagcggagcgccGcgccaggccgcccgcacacc	14	19	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51056826	T	T	51056826	1	4	143	0	1	0	0	0	0	0	0	0	10760	1102	38	3		3	NRXN1	2	51056826	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	206123	51056826	192142547	90	123331											
ERLEC1	27248	broad.mit.edu	37	chr2	54045061	54045061	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctccagtgatctgtaaaatCttagatacagcagatgaaaa	7	7	3	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54045061	A	A	54045061	2	1	143	1	0	0	0	0	0	0	0	1	5273	903	32	3		3	ERLEC1	2	54045061	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	2988235	54045061	189154312	91	123332											
PNPT1	87178	broad.mit.edu	37	chr2	55874526	55874526	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttctatttcacccttctCaggatcggttttggtgacca	7	11	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55874526	A	A	55874526	4	1	143	1	0	0	0	0	0	1	0	0	12268	835	29	3	833	3	PNPT1	2	55874526	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1829465	55874526	187324847	92	123333											
XPO1	7514	broad.mit.edu	37	chr2	61721289	61721289	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaacttcaaattgcttttCacttgttacaccttaaggga	5	10	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61721289	A	A	61721289	1	1	143	0	1	0	0	0	0	0	0	0	17572	841	29	3		3	XPO1	2	61721289	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	5846763	61721289	181478084	93	123334											
APLF	200558	broad.mit.edu	37	chr2	68740196	68740196	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaaattaaagaccagtttCtattttatcttatagaaaca	3	5	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68740196	T	T	68740196	1	4	143	0	1	0	0	0	0	0	0	0	778	928	32	4		4	APLF	2	68740196	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	7018907	68740196	174459177	94	123335											
CLEC4F	165530	broad.mit.edu	37	chr2	71046424	71046424	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaggagagaagctcatccTagggtctgagcatctgaagg	13	9	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71046424	A	A	71046424	1	1	143	0	1	0	0	0	0	0	0	0	3548	1537	53	5		5	CLEC4F	2	71046424	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	2306228	71046424	172152949	95	123336											
DYSF	8291	broad.mit.edu	37	chr2	71778902	71778902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcggggcagggaagggatGgccaggctgggactggcctt	20	9	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71778902	T	T	71778902	1	4	143	0	1	0	0	0	0	0	0	0	4899	1363	47	2		2	DYSF	2	71778902	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	732478	71778902	171420471	96	123337											
ALMS1	7840	broad.mit.edu	37	chr2	73680829	73680829	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgtaatgaggtctgaacCtgaagggtgtagtggaacca	13	6	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73680829	T	T	73680829	3	4	143	1	0	0	0	0	1	0	0	0	535	681	24	4	7202	4	ALMS1	2	73680829	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1901927	73680829	169518544	97	123338											
CTNNA2	1496	broad.mit.edu	37	chr2	80390275	80390275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctttattactggcccagCctggtggaaaacctcgaaaa	8	12	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80390275	A	A	80390275	1	1	143	0	1	0	0	0	0	0	0	0	4047	754	26	3		3	CTNNA2	2	80390275	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	6709446	80390275	162809098	98	123339											
LRRTM1	347730	broad.mit.edu	37	chr2	80529996	80529996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacacgttgcgcccgcaatCccacaggttcccggccaggg	11	17	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80529996	A	A	80529996	3	1	143	1	0	0	0	0	1	0	0	0	9126	855	30	3	623	3	LRRTM1	2	80529996	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	139721	80529996	162669377	99	123340											
NCAPH	23397	broad.mit.edu	37	chr2	97019094	97019094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctgcccttccctggccGggttccagtttacacagtgg	11	13	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97019094	T	T	97019094	3	4	143	1	0	0	0	0	1	0	0	0	10304	1116	39	1	991	1	NCAPH	2	97019094	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	16489098	97019094	146180279	100	123341											
ANKRD23	200539	broad.mit.edu	37	chr2	97509718	97509718	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttaccaactgctgaatgctGatgaagtccatggtcccccc	8	14	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97509718	A	A	97509718	2	1	143	1	0	0	0	0	0	0	0	1	652	1280	45	4		4	ANKRD23	2	97509718	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	490624	97509718	145689655	101	123342											
MRPS9	64965	broad.mit.edu	37	chr2	105654526	105654526	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccccgccccctcacccctcCggtcctggagctcccacagc	8	24	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105654526	G	G	105654526	1	3	143	0	1	0	0	0	0	0	0	0	9943	667	23	4		4	MRPS9	2	105654526	5'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	8144808	105654526	137544847	102	123343											
GCC2	9648	broad.mit.edu	37	chr2	109113598	109113598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctggccgccgtgaaaacCgccagtttggttttcttgac	10	12	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109113598	A	A	109113598	1	1	143	0	1	0	0	0	0	0	0	0	6348	667	23	1		1	GCC2	2	109113598	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3459072	109113598	134085775	103	123344											
IL1F9	56300	broad.mit.edu	37	chr2	113738764	113738764	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcatctgcagcaccttcAgctttctgtgccttccctgt	8	14	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113738764	G	G	113738764	1	3	143	0	1	0	0	0	0	0	0	0	7727	203	7	5		5	IL1F9	2	113738764	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	4625166	113738764	129460609	104	123345											
FAM123C	205147	broad.mit.edu	37	chr2	131521473	131521473	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagacacgaggtcactctGaaggcttgttctcctctatg	10	10	4	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131521473	A	A	131521473	3	1	143	1	0	0	0	0	1	0	0	0	5470	1291	45	4	1830	4	FAM123C	2	131521473	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	17782709	131521473	111677900	105	123346											
MGAT5	4249	broad.mit.edu	37	chr2	135119848	135119848	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catttctttgcacaccagctCataccccagacaacagcttt	4	15	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135119848	A	A	135119848	3	1	143	1	0	0	0	0	1	0	0	0	9641	826	29	3	1287	3	MGAT5	2	135119848	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3598375	135119848	108079525	106	123347											
THSD7B	80731	broad.mit.edu	37	chr2	138033625	138033625	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttacatagttttttttTattaatacgtaagttaacat	3	3	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138033625	C	C	138033625	1	2	143	0	1	0	0	0	0	0	0	0	16003	1769	61	5		5	THSD7B	2	138033625	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	2913777	138033625	105165748	107	123348											
GCA	25801	broad.mit.edu	37	chr2	163215992	163215992	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttacaataaaaaagtaatttCtttgtttaaagatttcttta	3	3	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163215992	G	G	163215992	1	3	143	0	1	0	0	0	0	0	0	0	6345	928	32	4		4	GCA	2	163215992	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	25182367	163215992	79983381	108	123349											
KCNH7	90134	broad.mit.edu	37	chr2	163279773	163279773	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggttcaaagctggtgattCcggcttttattccattttgg	12	7	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163279773	T	T	163279773	1	4	143	0	1	0	0	0	0	0	0	0	8107	870	30	4		4	KCNH7	2	163279773	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	63781	163279773	79919600	109	123350											
TTC21B	79809	broad.mit.edu	37	chr2	166758115	166758115	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggctgggattataggcatCagccactgcaccctgcctac	11	13	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166758115	T	T	166758115	1	4	143	0	1	0	0	0	0	0	0	0	16814	841	29	4		4	TTC21B	2	166758115	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3478342	166758115	76441258	110	123351											
TTC21B	79809	broad.mit.edu	37	chr2	166769264	166769264	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcatatattaaagcacaGgaactttaacaatttcaaaa	5	6	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166769264	A	A	166769264	1	1	143	0	1	0	0	0	0	0	0	0	16814	1015	35	4		4	TTC21B	2	166769264	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	11149	166769264	76430109	111	123352											
DYNC1I2	1781	broad.mit.edu	37	chr2	172583209	172583209	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaggtatttgtatttgcAgaataataatctgataaaga	8	2	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172583209	G	G	172583209	1	3	143	0	1	0	0	0	0	0	0	0	4883	203	7	5		5	DYNC1I2	2	172583209	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	5813945	172583209	70616164	112	123353											
TTN	7273	broad.mit.edu	37	chr2	179438298	179438298	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtattcattgcctttcaaGagtttagtgacctttagctt	7	7	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179438298	C	C	179438298	2	2	143	1	0	0	0	0	0	0	0	1	16861	929	33	4		4	TTN	2	179438298	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	6855089	179438298	63761075	113	123354											
TTN	7273	broad.mit.edu	37	chr2	179455351	179455351	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccaggtggtttgatgggCcggcaagcttttattggatc	15	7	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179455351	A	A	179455351	2	1	143	1	0	0	0	0	0	0	0	1	16861	726	26	3		3	TTN	2	179455351	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	17053	179455351	63744022	114	123355											
TTN	7273	broad.mit.edu	37	chr2	179466608	179466608	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttaattattatttttttaCctgtgcatcttcgggtatgt	6	5	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179466608	G	G	179466608	5	3	143	1	0	0	0	0	0	0	1	0	16861	521	18	4	52702	4	TTN	2	179466608	Splice_Site	SNP	C	TCGA-49-4514-01A-21D-1855-08	11257	179466608	63732765	115	123356											
TTN	7273	broad.mit.edu	37	chr2	179584073	179584073	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcctgaaaccagccaactGaaatcggggctgagccagag	11	12	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179584073	A	A	179584073	3	1	143	1	0	0	0	0	1	0	0	0	16861	1294	45	4	80605	4	TTN	2	179584073	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	117465	179584073	63615300	116	123357											
ZSWIM2	151112	broad.mit.edu	37	chr2	187694578	187694578	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagttggagaggcagtgatCttacaatgtgttttggtgtg	14	4	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187694578	A	A	187694578	3	1	143	1	0	0	0	0	1	0	0	0	18370	913	32	3	938	3	ZSWIM2	2	187694578	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	8110505	187694578	55504795	117	123358											
COL3A1	1281	broad.mit.edu	37	chr2	189859511	189859511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggcaaggatggatcacCtggagaacctggtgcaaatg	14	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189859511	A	A	189859511	3	1	143	1	0	0	0	0	1	0	0	0	3720	681	24	2	1487	2	COL3A1	2	189859511	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2164933	189859511	53339862	118	123359											
COL5A2	1290	broad.mit.edu	37	chr2	189918795	189918795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgatcttgctcagataCcatatgttataaaatgaaaa	6	5	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189918795	A	A	189918795	1	1	143	0	1	0	0	0	0	0	0	0	3729	522	18	3		3	COL5A2	2	189918795	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	59284	189918795	53280578	119	123360											
PTH2R	5746	broad.mit.edu	37	chr2	209307219	209307219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcactttttccatgaaggGgcacattgtctttcctatcc	6	12	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209307219	T	T	209307219	1	4	143	0	1	0	0	0	0	0	0	0	12866	1247	43	2		2	PTH2R	2	209307219	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	19388424	209307219	33892154	120	123361											
SPAG16	79582	broad.mit.edu	37	chr2	214149307	214149307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggacgcgagggacacggcgGacgcggtggcggctgagggc	23	10	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214149307	T	T	214149307	3	4	143	1	0	0	0	0	1	0	0	0	15094	1174	41	3	102	3	SPAG16	2	214149307	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4842088	214149307	29050066	121	123362											
SPAG16	79582	broad.mit.edu	37	chr2	215274946	215274946	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagattcacaaattgatgggCcacgaaaacgaggcacacac	10	10	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215274946	A	A	215274946	2	1	143	1	0	0	0	0	0	0	0	1	15094	726	26	3		3	SPAG16	2	215274946	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	1125639	215274946	27924427	122	123363											
ABCA12	26154	broad.mit.edu	37	chr2	215855551	215855551	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggtgttgttgaagaagaCactgataagatagctcatgg	13	4	1	5			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215855551	T	T	215855551	3	4	143	1	0	0	0	0	1	0	0	0	30	478	17	4	4408	4	ABCA12	2	215855551	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	580605	215855551	27343822	123	123364											
SPEG	10290	broad.mit.edu	37	chr2	220353374	220353374	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcaccagctcctgtacCgtggctgtggcccgtgagcc	12	15	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220353374	A	A	220353374	2	1	143	1	0	0	0	0	0	0	0	1	15154	639	23	1		1	SPEG	2	220353374	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	4497823	220353374	22845999	124	123365											
IRS1	3667	broad.mit.edu	37	chr2	227661440	227661440	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccacctccaatgtcaggaGagcagccaccgctgggggac	14	14	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227661440	C	C	227661440	3	2	143	1	0	0	0	0	1	0	0	0	7910	942	33	4	1717	4	IRS1	2	227661440	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	7308066	227661440	15537933	125	123366											
TRIP12	9320	broad.mit.edu	37	chr2	230643781	230643781	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccaacctcttggaaatgTgcacactaacagcaactgtt	7	12	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230643781	C	C	230643781	1	2	143	0	1	0	0	0	0	0	0	0	16681	1711	59	5		5	TRIP12	2	230643781	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	2982341	230643781	12555592	126	123367											
NCL	4691	broad.mit.edu	37	chr2	232322434	232322435	+	Missense_Mutation	DNP	CC	AA	AA													agtacagggaaatagatcgcCcatcgatctctgttccctgc							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	232322435	AA	AA	232322434	3	1	143	1	0	0	0	0	1	0	0	0	10321	623	22	2	789	2	NCL	2	232322434	Missense_Mutation	DNP	CC	TCGA-49-4514-01A-21D-1855-08	1678653	232322434	10876939	127	123368	534	2									
NCL	4691	broad.mit.edu	37	chr2	232322437	232322437	+	Missense_Mutation	SNP	T	A	A													acagggaaatagatcgcccaTcgatctctgttccctgcttt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232322437	A	A	232322437	3	1	143	1	0	0	0	0	1	0	0	0	10321	1435	50	5	792	5	NCL	2	232322437	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	3	232322437	10876936	128	123369	534	2									
HACL1	26061	broad.mit.edu	37	chr3	15610157	15610157	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaaataaccaatgttaaTaagatgctatcaaacttatt	4	5	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15610157	C	C	15610157	1	2	143	0	1	0	0	0	0	0	0	0	7007	1421	49	5		5	HACL1	3	15610157	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08		15610157	182412273	129	123370											
PLCL2	23228	broad.mit.edu	37	chr3	17056292	17056292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctccccgctttctgggGcccgataacacacccctagt	9	16	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17056292	T	T	17056292	2	4	143	1	0	0	0	0	0	0	0	1	12135	1190	42	3		3	PLCL2	3	17056292	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	1446135	17056292	180966138	130	123371											
TOP2B	7155	broad.mit.edu	37	chr3	25672356	25672356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtattttactgatgaacaCttcttattcagctgagtctg	7	8	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25672356	A	A	25672356	3	1	143	1	0	0	0	0	1	0	0	0	16490	564	20	3	3643	3	TOP2B	3	25672356	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	8616064	25672356	172350074	131	123372											
ULK4	54986	broad.mit.edu	37	chr3	41961235	41961235	+	Frame_Shift_Del	DEL	C	-	-													acatttcataaagcagacagCccaaagaccagaggtcactg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41961235	-	-	41961235	7	5	143	1	0	1	0	1	0	0	0	0	17104	739	26	0	3338	0	ULK4	3	41961235	Frame_Shift_Del	DEL	C	TCGA-49-4514-01A-21D-1855-08	16288879	41961235	156061195	132	123373											
LYZL4	131375	broad.mit.edu	37	chr3	42448235	42448235	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatggctcctgccacaccctCttctttgtaaaactttgtaa	5	12	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42448235	A	A	42448235	1	1	143	0	1	0	0	0	0	0	0	0	9221	928	32	3		3	LYZL4	3	42448235	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	487000	42448235	155574195	133	123374											
CCDC13	152206	broad.mit.edu	37	chr3	42781129	42781129	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtggtggggccataccatGagggcgtcgatgagctcgtc	17	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42781129	A	A	42781129	2	1	143	1	0	0	0	0	0	0	0	1	2791	1277	45	4		4	CCDC13	3	42781129	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	332894	42781129	155241301	134	123375											
TGM4	7047	broad.mit.edu	37	chr3	44951754	44951754	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaaggaagaccgctgcCctacagaatgtcaacatctt	7	11	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44951754	A	A	44951754	2	1	143	1	0	0	0	0	0	0	0	1	15955	610	22	2		2	TGM4	3	44951754	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	2170625	44951754	153070676	135	123376											
SCAP	22937	broad.mit.edu	37	chr3	47465464	47465464	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctccaggtctaccggggttGagaccacagacttggtgagc	13	12	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47465464	C	C	47465464	4	2	143	1	0	0	0	0	0	1	0	0	13989	1294	45	4	2790	4	SCAP	3	47465464	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2513710	47465464	150556966	136	123377											
CSPG5	10675	broad.mit.edu	37	chr3	47618951	47618951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgggtaagtcagctctgGcccttgagggtcgggtgtgc	16	8	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47618951	T	T	47618951	3	4	143	1	0	0	0	0	1	0	0	0	3995	1203	42	3	1070	3	CSPG5	3	47618951	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	153487	47618951	150403479	137	123378											
ROBO2	6092	broad.mit.edu	37	chr3	77366446	77366446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttcccagtgttaGgtgacgaggatgaatgcaag	11	5	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77366446	T	T	77366446	1	4	143	0	1	0	0	0	0	0	0	0	13625	1015	35	2		2	ROBO2	3	77366446	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	29747495	77366446	120655984	138	123379											
CADM2	253559	broad.mit.edu	37	chr3	86063645	86063645	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatattcaaatgaaactcccTggaaaataccacagtgttca	6	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86063645	A	A	86063645	1	1	143	0	1	0	0	0	0	0	0	0	2593	1595	55	5		5	CADM2	3	86063645	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	8697199	86063645	111958785	139	123380											
EPHA6	285220	broad.mit.edu	37	chr3	97311586	97311586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggattcctgctggtagGtatttcaggtgaagttttct	11	8	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97311586	T	T	97311586	1	4	143	0	1	0	0	0	0	0	0	0	5213	1276	44	3		3	EPHA6	3	97311586	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	11247941	97311586	100710844	140	123381											
OR5K3	403277	broad.mit.edu	37	chr3	98110219	98110219	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaagaggcaaagctttatCtacttgtgcatctcactttc	9	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98110219	A	A	98110219	3	1	143	1	0	0	0	0	1	0	0	0	11262	913	32	3	712	3	OR5K3	3	98110219	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	798633	98110219	99912211	141	123382											
C3orf26	84319	broad.mit.edu	37	chr3	99890778	99890778	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgatccctaaaggcctcTcccagacctcagcttttttc	7	14	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99890778	A	A	99890778	1	1	143	0	1	0	0	0	0	0	0	0	2240	1566	54	5		5	C3orf26	3	99890778	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	1780559	99890778	98131652	142	123383											
CEP97	79598	broad.mit.edu	37	chr3	101443479	101443479	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattacaagctccacagagcCgcgggaggacggttgcctgg	15	11	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101443479	A	A	101443479	1	1	143	0	1	0	0	0	0	0	0	0	3293	667	23	1		1	CEP97	3	101443479	5'Flank	SNP	C	TCGA-49-4514-01A-21D-1855-08	1552701	101443479	96578951	143	123384											
KIAA1524	57650	broad.mit.edu	37	chr3	108271090	108271090	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagattcttaccttaatgctCaactcttttcttatctgttc	3	11	5	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108271090	G	G	108271090	3	3	143	1	0	0	0	0	1	0	0	0	8309	825	29	4	187	4	KIAA1524	3	108271090	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	6827611	108271090	89751340	144	123385											
MORC1	27136	broad.mit.edu	37	chr3	108829688	108829688	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaattgcttacataaggTataacctattgtcagatatc	6	6	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108829688	C	C	108829688	1	2	143	0	1	0	0	0	0	0	0	0	9795	1653	57	5		5	MORC1	3	108829688	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	558598	108829688	89192742	145	123386											
HCLS1	3059	broad.mit.edu	37	chr3	121351263	121351263	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcctcctgctcatgccTgtccatctcctcaacgtcct	4	18	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121351263	A	A	121351263	3	1	143	1	0	0	0	0	1	0	0	0	7061	1579	55	5	316	5	HCLS1	3	121351263	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	12521575	121351263	76671167	146	123387											
SEMA5B	54437	broad.mit.edu	37	chr3	122646762	122646762	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catagagctccccctgggagGagatgacagctgtggagttg	15	9	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122646762	A	A	122646762	3	1	143	1	0	0	0	0	1	0	0	0	14151	1174	41	4	2794	4	SEMA5B	3	122646762	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1295499	122646762	75375668	147	123388											
HEG1	57493	broad.mit.edu	37	chr3	124731533	124731533	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagcaaaggtggcagattTgggagccaagtcttcagccg	13	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124731533	A	A	124731533	4	1	143	1	0	0	0	0	0	1	0	0	7111	1821	63	5	1303	5	HEG1	3	124731533	Nonsense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	2084771	124731533	73290897	148	123389											
ZNF148	7707	broad.mit.edu	37	chr3	125029739	125029739	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actctgccatgccctgctctGaagagacacccaccgttacc	7	17	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125029739	A	A	125029739	1	1	143	0	1	0	0	0	0	0	0	0	17860	1305	45	4		4	ZNF148	3	125029739	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	298206	125029739	72992691	149	123390											
SLC41A3	54946	broad.mit.edu	37	chr3	125741507	125741507	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaacacatgaaatgtggggGacacattcaaacaacagcac	8	11	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125741507	T	T	125741507	1	4	143	0	1	0	0	0	0	0	0	0	14745	1189	41	3		3	SLC41A3	3	125741507	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	711768	125741507	72280923	150	123391											
COL6A6	131873	broad.mit.edu	37	chr3	130300779	130300779	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatcttatttgttggtctAtgattgcaatgaaccctttt	6	6	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130300779	G	G	130300779	1	3	143	0	1	0	0	0	0	0	0	0	3735	464	16	5		5	COL6A6	3	130300779	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	4559272	130300779	67721651	151	123392											
NEK11	79858	broad.mit.edu	37	chr3	130873949	130873949	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgtcagaaggaggctgctCatataattaatgccatgtaa	9	6	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130873949	T	T	130873949	3	4	143	1	0	0	0	0	1	0	0	0	10418	826	29	4	976	4	NEK11	3	130873949	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	573170	130873949	67148481	152	123393											
DZIP1L	199221	broad.mit.edu	37	chr3	137783472	137783472	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcatcctacatcctacctGaggcttccttcctggtgtgg	9	13	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137783472	A	A	137783472	4	1	143	1	0	0	0	0	0	1	0	0	4904	1299	45	4	171	4	DZIP1L	3	137783472	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	6909523	137783472	60238958	153	123394											
ATR	545	broad.mit.edu	37	chr3	142266758	142266758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttctgtttcattctaacCcaaagacatgttaaaaaaaa	3	7	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142266758	A	A	142266758	1	1	143	0	1	0	0	0	0	0	0	0	1208	638	22	2		2	ATR	3	142266758	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	4483286	142266758	55755672	154	123395											
FAM194A	131831	broad.mit.edu	37	chr3	150421725	150421725	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagccagctctttggccgCggccccggtcggctctcgcg	13	17	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150421725	T	T	150421725	1	4	143	0	1	0	0	0	0	0	0	0	5573	783	27	4		4	FAM194A	3	150421725	5'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	8154967	150421725	47600705	155	123396											
GPR149	344758	broad.mit.edu	37	chr3	154056105	154056105	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgaaagctaggttctgAggttgagacatttagaaatt	11	3	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154056105	T	T	154056105	1	4	143	0	1	0	0	0	0	0	0	0	6719	319	11	5		5	GPR149	3	154056105	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	3634380	154056105	43966325	156	123397											
TIPARP	25976	broad.mit.edu	37	chr3	156396125	156396125	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtactgagctctttcaggaCaaaagtgaagaggcttccct	10	9	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156396125	T	T	156396125	2	4	143	1	0	0	0	0	0	0	0	1	16047	477	17	4		4	TIPARP	3	156396125	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	2340020	156396125	41626305	157	123398											
SI	6476	broad.mit.edu	37	chr3	164780173	164780173	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacacctgttgatactgttGaactacttgttctggtgtat	8	8	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164780173	A	A	164780173	4	1	143	1	0	0	0	0	0	1	0	0	14410	1299	45	4	4637	4	SI	3	164780173	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	8384048	164780173	33242257	158	123399											
SI	6476	broad.mit.edu	37	chr3	164781358	164781358	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaatttgaaaatacgatTttcaaatatgtttaaaacac	4	5	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164781358	A	A	164781358	1	1	143	0	1	0	0	0	0	0	0	0	14410	1856	64	5		5	SI	3	164781358	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	1185	164781358	33241072	159	123400											
USP13	8975	broad.mit.edu	37	chr3	179482019	179482019	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgaatttatttctgtagCagttgagactttccaatgta	9	5	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179482019	T	T	179482019	1	4	143	0	1	0	0	0	0	0	0	0	17170	725	25	4		4	USP13	3	179482019	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	14700661	179482019	18540411	160	123401											
KNG1	3827	broad.mit.edu	37	chr3	186459269	186459269	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttctatcatcaatagcatGatttttgcagtaatacattc	4	7	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186459269	A	A	186459269	1	1	143	0	1	0	0	0	0	0	0	0	8498	1305	45	4		4	KNG1	3	186459269	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6977250	186459269	11563161	161	123402											
RFC4	5984	broad.mit.edu	37	chr3	186508238	186508238	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaagatgtttctaggtgaGactagacatacactctgcca	8	8	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186508238	C	C	186508238	1	2	143	0	1	0	0	0	0	0	0	0	13355	957	33	4		4	RFC4	3	186508238	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	48969	186508238	11514192	162	123403											
MUC4	4585	broad.mit.edu	37	chr3	195475820	195475820	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcactggcctccatggtcAcagtagcccctactgcacgg	11	15	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	195475820	G	G	195475820	2	3	143	1	0	0	0	0	0	0	0	1	10072	157	6	5		5	MUC4	3	195475820	Silent	SNP	A	TCGA-49-4514-01A-21D-1855-08	8967582	195475820	2546610	163	123404											
ACOX3	8310	broad.mit.edu	37	chr4	8401271	8401271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggcacacgaacggccccCcatgcctgtaccttaaaggg	10	16	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8401271	A	A	8401271	1	1	143	0	1	0	0	0	0	0	0	0	160	638	22	2		2	ACOX3	4	8401271	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08		8401271	182753005	164	123405											
SLIT2	9353	broad.mit.edu	37	chr4	20600010	20600010	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctcatccagcttctgcCatttacaggtgaagatctct	8	12	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20600010	T	T	20600010	2	4	143	1	0	0	0	0	0	0	0	1	14854	581	21	4		4	SLIT2	4	20600010	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	12198739	20600010	170554266	165	123406											
GBA3	57733	broad.mit.edu	37	chr4	22748973	22748974	+	Missense_Mutation	DNP	CC	AT	AT													gttaaaaaatggggttactcCcattgtgaccctctaccact							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	22748974	AT	AT	22748973	3	1	143	1	0	0	0	0	1	0	0	0	6330	623	22	2	351	2	GBA3	4	22748973	Missense_Mutation	DNP	CC	TCGA-49-4514-01A-21D-1855-08	2148963	22748973	168405303	166	123407											
SLC34A2	10568	broad.mit.edu	37	chr4	25676292	25676292	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacaggggccctgggagtggGaccacccatggtcttgcaaa	15	11	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25676292	T	T	25676292	1	4	143	0	1	0	0	0	0	0	0	0	14682	1189	41	3		3	SLC34A2	4	25676292	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2927319	25676292	165477984	167	123408											
FAM114A1	92689	broad.mit.edu	37	chr4	38945163	38945163	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catatccagaccagttgtttGaaagcacagccgtgacctgg	10	11	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38945163	A	A	38945163	2	1	143	1	0	0	0	0	0	0	0	1	5449	1281	45	4		4	FAM114A1	4	38945163	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	13268871	38945163	152209113	168	123409											
RFC1	5981	broad.mit.edu	37	chr4	39291474	39291474	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttaaaatactaccttgatCatggcatcagtttctatagc	6	9	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39291474	G	G	39291474	3	3	143	1	0	0	0	0	1	0	0	0	13352	826	29	4	97	4	RFC1	4	39291474	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	346311	39291474	151862802	169	123410											
LIMCH1	22998	broad.mit.edu	37	chr4	41687770	41687770	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatccaacgcacagttcAgaagatgtgaagccaaaaac	7	10	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41687770	T	T	41687770	2	4	143	1	0	0	0	0	0	0	0	1	8869	175	7	5		5	LIMCH1	4	41687770	Silent	SNP	A	TCGA-49-4514-01A-21D-1855-08	2396296	41687770	149466506	170	123411											
GABRA4	2557	broad.mit.edu	37	chr4	46994725	46994725	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagagaggagagatagaaAgagagagagatttatttttg	13	2	0	6			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46994725	G	G	46994725	1	3	143	0	1	0	0	0	0	0	0	0	6223	87	3	5		5	GABRA4	4	46994725	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	5306955	46994725	144159551	171	123412											
LPHN3	23284	broad.mit.edu	37	chr4	62935760	62935760	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgaatgtttttgcttcTgtgtttgtgtgtgtgttcta	10	4	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62935760	C	C	62935760	1	2	143	0	1	0	0	0	0	0	0	0	9004	1595	55	5		5	LPHN3	4	62935760	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	15941035	62935760	128218516	172	123413											
NPFFR2	10886	broad.mit.edu	37	chr4	72897519	72897519	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctaaatcacttgcccagGatctggagccaagtaatggt	11	9	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72897519	T	T	72897519	1	4	143	0	1	0	0	0	0	0	0	0	10673	1189	41	3		3	NPFFR2	4	72897519	5'Flank	SNP	G	TCGA-49-4514-01A-21D-1855-08	9961759	72897519	118256757	173	123414											
AFM	173	broad.mit.edu	37	chr4	74360839	74360839	+	Intron	SNP	T	G	G													aacgtaccatggaagagaacTtttgtaaaatgatctatagc							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74360839	G	G	74360839	1	3	143	0	1	0	0	0	0	0	0	0	361	1624	56	5		5	AFM	4	74360839	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	1463320	74360839	116793437	174	123415	535	2									
AFM	173	broad.mit.edu	37	chr4	74360842	74360842	+	Intron	SNP	T	G	G													gtaccatggaagagaactttTgtaaaatgatctatagccaa							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74360842	G	G	74360842	1	3	143	0	1	0	0	0	0	0	0	0	361	1827	63	5		5	AFM	4	74360842	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	3	74360842	116793434	175	123416	535	2									
EPGN	255324	broad.mit.edu	37	chr4	75174213	75174213	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccttccacccgtcagtctAgaaggataagagaaagaaag	9	9	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75174213	G	G	75174213	1	3	143	0	1	0	0	0	0	0	0	0	5206	435	15	5		5	EPGN	4	75174213	5'UTR	SNP	A	TCGA-49-4514-01A-21D-1855-08	813371	75174213	115980063	176	123417											
WDFY3	23001	broad.mit.edu	37	chr4	85738544	85738544	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacacatttatcaaacttaCccttaaaatatcagtcttca	1	10	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85738544	A	A	85738544	5	1	143	1	0	0	0	0	0	0	1	0	17397	521	18	3	8959	3	WDFY3	4	85738544	Splice_Site	SNP	C	TCGA-49-4514-01A-21D-1855-08	10564331	85738544	105415732	177	123418											
HERC3	8916	broad.mit.edu	37	chr4	89574133	89574133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggaggggatcccactgGctcaggtggctgccggaggg	18	12	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89574133	T	T	89574133	3	4	143	1	0	0	0	0	1	0	0	0	7126	1203	42	3	591	3	HERC3	4	89574133	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3835589	89574133	101580143	178	123419											
MMRN1	22915	broad.mit.edu	37	chr4	90844465	90844465	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctctgacccaattattgTcaatgctatttattacaact	3	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90844465	C	C	90844465	1	2	143	0	1	0	0	0	0	0	0	0	9764	1682	58	5		5	MMRN1	4	90844465	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	1270332	90844465	100309811	179	123420											
MMRN1	22915	broad.mit.edu	37	chr4	90857868	90857868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgccaaagaaaattaacGcacttaagaaaccaacggta	6	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90857868	T	T	90857868	3	4	143	1	0	0	0	0	1	0	0	0	9764	1087	38	3	3059	3	MMRN1	4	90857868	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	13403	90857868	100296408	180	123421											
ATOH1	474	broad.mit.edu	37	chr4	94750361	94750361	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcagaggccgctgcgcCccgggacgaggtggacggcc	17	15	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94750361	A	A	94750361	3	1	143	1	0	0	0	0	1	0	0	0	1116	623	22	2	286	2	ATOH1	4	94750361	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3892493	94750361	96403915	181	123422											
ADH4	127	broad.mit.edu	37	chr4	100062826	100062826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtatggcacagagaggtaGcaatgatctacaaggcaatc	11	8	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100062826	T	T	100062826	3	4	143	1	0	0	0	0	1	0	0	0	310	971	34	3	1042	3	ADH4	4	100062826	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	5312465	100062826	91091450	182	123423											
TBCK	93627	broad.mit.edu	37	chr4	107216202	107216202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaacaaaatgcctttttGtttgccaagttctgcttttc	5	8	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107216202	T	T	107216202	1	4	143	0	1	0	0	0	0	0	0	0	15758	1392	48	3		3	TBCK	4	107216202	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	7153376	107216202	83938074	183	123424											
DKK2	27123	broad.mit.edu	37	chr4	107846973	107846973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccattattgcagcgggtaCtggggcagcacatgccatct	11	11	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107846973	A	A	107846973	3	1	143	1	0	0	0	0	1	0	0	0	4585	565	20	3	435	3	DKK2	4	107846973	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	630771	107846973	83307303	184	123425											
COL25A1	84570	broad.mit.edu	37	chr4	109765821	109765821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttctgctaaggccattagTagttggagaggaagaaagat	14	4	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109765821	A	A	109765821	1	1	143	0	1	0	0	0	0	0	0	0	3716	1653	57	5		5	COL25A1	4	109765821	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	1918848	109765821	81388455	185	123426											
LRIT3	345193	broad.mit.edu	37	chr4	110790971	110790971	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacaactccaataccaccaGacacttctgaaagaactgga	5	14	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110790971	C	C	110790971	3	2	143	1	0	0	0	0	1	0	0	0	9036	942	33	4	941	4	LRIT3	4	110790971	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1025150	110790971	80363305	186	123427											
ANK2	287	broad.mit.edu	37	chr4	113748339	113748339	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacatcctgtgtagtgataCcaggtcacacctcaaatttc	6	11	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113748339	G	G	113748339	1	3	143	0	1	0	0	0	0	0	0	0	621	522	18	4		4	ANK2	4	113748339	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2957368	113748339	77405937	187	123428											
ANK2	287	broad.mit.edu	37	chr4	114203804	114203804	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttaatcttactctatatgCatgtgttttatttttgttct	5	5	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114203804	G	G	114203804	1	3	143	0	1	0	0	0	0	0	0	0	621	725	25	4		4	ANK2	4	114203804	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	455465	114203804	76950472	188	123429											
USP53	54532	broad.mit.edu	37	chr4	120177781	120177781	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catacatgaatttcccctctCtgtctgaggctaccaagtat	6	12	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120177781	T	T	120177781	1	4	143	0	1	0	0	0	0	0	0	0	17211	928	32	4		4	USP53	4	120177781	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	5973977	120177781	70976495	189	123430											
KIAA1109	84162	broad.mit.edu	37	chr4	123140583	123140583	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgtcaacatcatccagctCtgggtggactgctgttggaa	11	10	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123140583	G	G	123140583	3	3	143	1	0	0	0	0	1	0	0	0	8278	913	32	4	2410	4	KIAA1109	4	123140583	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2962802	123140583	68013693	190	123431											
CCRN4L	25819	broad.mit.edu	37	chr4	139966314	139966314	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgtggggacttcaatgcaGagccaacagaagaggtctac	13	8	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139966314	C	C	139966314	3	2	143	1	0	0	0	0	1	0	0	0	2981	943	33	4	992	4	CCRN4L	4	139966314	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	16825731	139966314	51187962	191	123432											
INPP4B	8821	broad.mit.edu	37	chr4	143129922	143129922	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttttaagatgttaaagttaGaaataaaagagttttaaaaa	7	0	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143129922	T	T	143129922	1	4	143	0	1	0	0	0	0	0	0	0	7823	957	33	3		3	INPP4B	4	143129922	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	3163608	143129922	48024354	192	123433											
ZNF827	152485	broad.mit.edu	37	chr4	146806772	146806772	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagacagagacagagagagaGagagagagagagagagagag	18	2	0	9			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146806772	C	C	146806772	1	2	143	0	1	0	0	0	0	0	0	0	18309	957	33	4		4	ZNF827	4	146806772	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	3676850	146806772	44347504	193	123434											
LRBA	987	broad.mit.edu	37	chr4	151749341	151749341	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attatcagtacctgtcaaaaGatctgaactgcacgggttgt	9	8	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151749341	T	T	151749341	3	4	143	1	0	0	0	0	1	0	0	0	9018	942	33	3	3545	3	LRBA	4	151749341	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4942569	151749341	39404935	194	123435											
TDO2	6999	broad.mit.edu	37	chr4	156832598	156832598	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacatgtcggttacaatgcAttttacataattttaccatg	5	7	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156832598	T	T	156832598	1	4	143	0	1	0	0	0	0	0	0	0	15849	232	8	5		5	TDO2	4	156832598	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	5083257	156832598	34321678	195	123436											
FSTL5	56884	broad.mit.edu	37	chr4	162376131	162376131	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagacaaatctttaaaaaGttgatcactcaacttagcac	5	8	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162376131	A	A	162376131	1	1	143	0	1	0	0	0	0	0	0	0	6140	1044	36	4		4	FSTL5	4	162376131	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5543533	162376131	28778145	196	123437											
GALNTL6	442117	broad.mit.edu	37	chr4	173734719	173734719	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcactaaaccacaaaaccatCgtgtgtcccatgatcgatgt	7	12	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173734719	A	A	173734719	2	1	143	1	0	0	0	0	0	0	0	1	6287	874	31	3		3	GALNTL6	4	173734719	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	11358588	173734719	17419557	197	123438											
ADAM29	11086	broad.mit.edu	37	chr4	175898086	175898086	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttccagagtggtgcaatggTacttcccataagtgcccaga	10	11	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175898086	A	A	175898086	2	1	143	1	0	0	0	0	0	0	0	1	247	1625	57	5		5	ADAM29	4	175898086	Silent	SNP	T	TCGA-49-4514-01A-21D-1855-08	2163367	175898086	15256190	198	123439											
C4orf41	60684	broad.mit.edu	37	chr4	184604010	184604010	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccctctgtcctttcctctCaacctcaaaaggcaacaata	3	15	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184604010	G	G	184604010	1	3	143	0	1	0	0	0	0	0	0	0	2293	841	29	4		4	C4orf41	4	184604010	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	8705924	184604010	6550266	199	123440											
SNX25	83891	broad.mit.edu	37	chr4	186231881	186231881	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtggcaaagaagcagtgtGagaagagaatccgaatcctg	13	7	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186231881	C	C	186231881	3	2	143	1	0	0	0	0	1	0	0	0	15010	1291	45	4	785	4	SNX25	4	186231881	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1627871	186231881	4922395	200	123441											
SLC12A7	10723	broad.mit.edu	37	chr5	1074626	1074626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccactcaaaggccgaCctcagaaacagctcttctgt	8	15	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1074626	A	A	1074626	1	1	143	0	1	0	0	0	0	0	0	0	14501	522	18	3		3	SLC12A7	5	1074626	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08		1074626	179840634	201	123442											
SLC6A18	348932	broad.mit.edu	37	chr5	1225638	1225638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggccgcctgcgacctcgggGatgagaggcccaagtgggac	17	13	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1225638	T	T	1225638	3	4	143	1	0	0	0	0	1	0	0	0	14795	1174	41	3	48	3	SLC6A18	5	1225638	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	151012	1225638	179689622	202	123443											
ADAMTS16	170690	broad.mit.edu	37	chr5	5236988	5236988	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggagttattttatggGggaagaaagaaagtctatct	14	2	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5236988	A	A	5236988	1	1	143	0	1	0	0	0	0	0	0	0	261	1247	43	4		4	ADAMTS16	5	5236988	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	4011350	5236988	175678272	203	123444											
PAPD7	11044	broad.mit.edu	37	chr5	6743935	6743935	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatacagcctaattttaatGgccattagctttctacaggt	6	9	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6743935	A	A	6743935	3	1	143	1	0	0	0	0	1	0	0	0	11520	1348	47	4	495	4	PAPD7	5	6743935	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1506947	6743935	174171325	204	123445											
ADCY2	108	broad.mit.edu	37	chr5	7724743	7724743	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaggtaagtttttttcttCttcaaaatcatcaatcgagt	6	6	5	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7724743	T	T	7724743	1	4	143	0	1	0	0	0	0	0	0	0	294	928	32	4		4	ADCY2	5	7724743	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	980808	7724743	173190517	205	123446											
CTNND2	1501	broad.mit.edu	37	chr5	11159692	11159692	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacacaggactgaccttaGgcacccggtggcgttacgca	13	12	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11159692	A	A	11159692	2	1	143	1	0	0	0	0	0	0	0	1	4054	991	35	4		4	CTNND2	5	11159692	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	3434949	11159692	169755568	206	123447											
CDH18	1016	broad.mit.edu	37	chr5	19473721	19473721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgtcttcctctccgcCtccttcatcatcataggtga	6	15	6	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19473721	A	A	19473721	3	1	143	1	0	0	0	0	1	0	0	0	3133	681	24	2	389	2	CDH18	5	19473721	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	8314029	19473721	161441539	207	123448											
CDH10	1008	broad.mit.edu	37	chr5	24491768	24491768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcagggcttcagcactgCaggattgcatgttgccttgg	15	9	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24491768	A	A	24491768	3	1	143	1	0	0	0	0	1	0	0	0	3126	710	25	3	581	3	CDH10	5	24491768	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5018047	24491768	156423492	208	123449											
RNASEN	29102	broad.mit.edu	37	chr5	31410943	31410943	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtactcctgcatgcccagctCctccgctaccttggcctgag	9	17	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31410943	A	A	31410943	4	1	143	1	0	0	0	0	0	1	0	0	13528	864	30	3	571	3	RNASEN	5	31410943	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	6919175	31410943	149504317	209	123450											
C5orf23	79614	broad.mit.edu	37	chr5	32789898	32789898	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgcagatagtgatggattCagaaagtaggttccagtggc	13	6	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32789898	T	T	32789898	1	4	143	0	1	0	0	0	0	0	0	0	2309	841	29	4		4	C5orf23	5	32789898	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	1378955	32789898	148125362	210	123451											
SPEF2	79925	broad.mit.edu	37	chr5	35670195	35670195	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttgatgcatgattggaagGaactattttttaatgcaaaa	9	3	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35670195	A	A	35670195	3	1	143	1	0	0	0	0	1	0	0	0	15153	1175	41	4	1428	4	SPEF2	5	35670195	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2880297	35670195	145245065	211	123452											
RANBP3L	202151	broad.mit.edu	37	chr5	36257147	36257147	+	Frame_Shift_Del	DEL	G	-	-													tgcagcagctgattcaattaGggaagtatttttaatagagt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36257147	-	-	36257147	7	5	143	1	0	1	0	1	0	0	0	0	13138	991	35	0	618	0	RANBP3L	5	36257147	Frame_Shift_Del	DEL	G	TCGA-49-4514-01A-21D-1855-08	586952	36257147	144658113	212	123453											
ITGA1	3672	broad.mit.edu	37	chr5	52183654	52183654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattactttagaaaggagGcattcacggaagcccggggt	14	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52183654	T	T	52183654	3	4	143	1	0	0	0	0	1	0	0	0	7942	1203	42	3	811	3	ITGA1	5	52183654	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	15926507	52183654	128731606	213	123454											
ANKRD55	79722	broad.mit.edu	37	chr5	55396111	55396111	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagcactcggtttgtccGcagaggttctccagatagaa	12	9	1	3	rs143274111	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55396111	A	A	55396111	3	1	143	1	0	0	0	0	1	0	0	0	681	1086	38	4	104	4	ANKRD55	5	55396111	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3212457	55396111	125519149	214	123455											
HTR1A	3350	broad.mit.edu	37	chr5	63256551	63256551	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggccagggccatcttgcgCttcgcctcggcgttgcgctc	14	16	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63256551	G	G	63256551	3	3	143	1	0	0	0	0	1	0	0	0	7506	796	28	4	275	4	HTR1A	5	63256551	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	7860440	63256551	117658709	215	123456											
MAP1B	4131	broad.mit.edu	37	chr5	71493960	71493960	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatgactccctttcagtgtCtgttgtgcaaacacctacca	7	12	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71493960	T	T	71493960	3	4	143	1	0	0	0	0	1	0	0	0	9320	913	32	4	4796	4	MAP1B	5	71493960	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	8237409	71493960	109421300	216	123457											
FAM169A	26049	broad.mit.edu	37	chr5	74096661	74096661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaagtataaacaaaaaatAaaagtacaaataaaaaatga	3	2	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74096661	G	G	74096661	1	3	143	0	1	0	0	0	0	0	0	0	5532	377	13	5		5	FAM169A	5	74096661	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	2602701	74096661	106818599	217	123458											
MSH3	4437	broad.mit.edu	37	chr5	80083234	80083234	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaagtaaagctgtttgGtgtaatctccatctctctta	6	7	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80083234	C	C	80083234	1	2	143	0	1	0	0	0	0	0	0	0	9965	1276	44	4		4	MSH3	5	80083234	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5986573	80083234	100832026	218	123459											
ACOT12	134526	broad.mit.edu	37	chr5	80631635	80631635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaaagtcagacaagagaCgataagccaaatgtgctgga	11	6	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80631635	T	T	80631635	3	4	143	1	0	0	0	0	1	0	0	0	150	536	19	4	469	4	ACOT12	5	80631635	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	548401	80631635	100283625	219	123460											
SLCO6A1	133482	broad.mit.edu	37	chr5	101834533	101834533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctcccagagtgccgggCgacgcctacgaacatggctc	13	15	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101834533	A	A	101834533	3	1	143	1	0	0	0	0	1	0	0	0	14846	768	27	3	2195	3	SLCO6A1	5	101834533	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	21202898	101834533	79080727	220	123461											
PAM	5066	broad.mit.edu	37	chr5	102326009	102326009	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaggcactggattggcctgGagtatacttgttaccaggcc	13	9	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102326009	C	C	102326009	3	2	143	1	0	0	0	0	1	0	0	0	11506	1174	41	4	1575	4	PAM	5	102326009	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	491476	102326009	78589251	221	123462											
SEMA6A	57556	broad.mit.edu	37	chr5	115783224	115783224	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgagcttgccgttgtgcatGagtggcgtgaggatggcctc	17	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115783224	A	A	115783224	2	1	143	1	0	0	0	0	0	0	0	1	14152	1277	45	4		4	SEMA6A	5	115783224	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	13457215	115783224	65132036	222	123463											
RAPGEF6	51735	broad.mit.edu	37	chr5	130815330	130815330	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctcctgtgatgtctgttCaatatctcctggcacatgct	7	11	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130815330	G	G	130815330	3	3	143	1	0	0	0	0	1	0	0	0	13156	835	29	4	3386	4	RAPGEF6	5	130815330	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	15032106	130815330	50099930	223	123464											
RAPGEF6	51735	broad.mit.edu	37	chr5	130883763	130883763	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatagctgttaacctccaCatcatcagtaatggtttggc	8	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130883763	T	T	130883763	3	4	143	1	0	0	0	0	1	0	0	0	13156	478	17	4	4911	4	RAPGEF6	5	130883763	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	68433	130883763	50031497	224	123465											
ACSL6	23305	broad.mit.edu	37	chr5	131303597	131303597	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttttactcactacatgtaGcagccacaggcatgaatggc	9	10	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131303597	A	A	131303597	1	1	143	0	1	0	0	0	0	0	0	0	181	986	34	4		4	ACSL6	5	131303597	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	419834	131303597	49611663	225	123466											
DDX46	9879	broad.mit.edu	37	chr5	134130846	134130846	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctagccttcagtattttAccagataaacttaactgtgc	5	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134130846	G	G	134130846	1	3	143	0	1	0	0	0	0	0	0	0	4397	406	14	5		5	DDX46	5	134130846	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	2827249	134130846	46784414	226	123467											
SPOCK1	6695	broad.mit.edu	37	chr5	136448300	136448300	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgaagctccagaccctatGagtctttcctctaagttccc	7	13	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136448300	A	A	136448300	1	1	143	0	1	0	0	0	0	0	0	0	15197	1305	45	4		4	SPOCK1	5	136448300	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2317454	136448300	44466960	227	123468											
PCDHB7	56129	broad.mit.edu	37	chr5	140552718	140552718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgtggccccagagagcCctgtgtgctgcctttccagt	12	13	0	1	rs139238267		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140552718	A	A	140552718	3	1	143	1	0	0	0	0	1	0	0	0	11641	623	22	2	304	2	PCDHB7	5	140552718	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4104418	140552718	40362542	228	123469											
PCDHB7	56129	broad.mit.edu	37	chr5	140553224	140553224	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgtgtcagccagagatttaGataccggaagtaatggggaa	13	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140553224	A	A	140553224	3	1	143	1	0	0	0	0	1	0	0	0	11641	942	33	4	810	4	PCDHB7	5	140553224	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	506	140553224	40362036	229	123470											
PCDHGB3	56102	broad.mit.edu	37	chr5	140750984	140750984	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagatatttcagatgaaaaTgacaatgccccggagataac	8	7	1	5			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140750984	C	C	140750984	2	2	143	1	0	0	0	0	0	0	0	1	11658	1461	51	5		5	PCDHGB3	5	140750984	Silent	SNP	T	TCGA-49-4514-01A-21D-1855-08	197760	140750984	40164276	230	123471											
SPINK5	11005	broad.mit.edu	37	chr5	147475378	147475378	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatttattttactttttcCagcaagcagcgtttttcaga	5	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147475378	T	T	147475378	1	4	143	0	1	0	0	0	0	0	0	0	15180	609	21	4		4	SPINK5	5	147475378	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	6724394	147475378	33439882	231	123472											
TCOF1	6949	broad.mit.edu	37	chr5	149758369	149758369	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctattgcatggaggagccaGaatccagactcgggctccag	12	12	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149758369	C	C	149758369	1	2	143	0	1	0	0	0	0	0	0	0	15830	957	33	4		4	TCOF1	5	149758369	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2282991	149758369	31156891	232	123473											
TCOF1	6949	broad.mit.edu	37	chr5	149758590	149758590	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagctgctcaagccaagcaGaggtctccatccaaggcaag	11	13	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149758590	C	C	149758590	3	2	143	1	0	0	0	0	1	0	0	0	15830	933	33	4	2521	4	TCOF1	5	149758590	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	221	149758590	31156670	233	123474											
FAM71B	153745	broad.mit.edu	37	chr5	156590341	156590341	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatagctgctcccgccagcGctgtggtcacttgacctggg	13	13	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156590341	C	C	156590341	3	2	143	1	0	0	0	0	1	0	0	0	5659	1087	38	4	886	4	FAM71B	5	156590341	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	6831751	156590341	24324919	234	123475											
FAM71B	153745	broad.mit.edu	37	chr5	156592974	156592974	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgatgcccactgtcaccAttcggacacggttgtgtaca	10	12	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156592974	T	T	156592974	3	4	143	1	0	0	0	0	1	0	0	0	5659	217	8	5	1619	5	FAM71B	5	156592974	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	2633	156592974	24322286	235	123476											
GABRA6	2559	broad.mit.edu	37	chr5	161116181	161116181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatacaccatgaggtgagGtttctccaattctatttccc	6	10	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161116181	T	T	161116181	1	4	143	0	1	0	0	0	0	0	0	0	6225	1276	44	3		3	GABRA6	5	161116181	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	4523207	161116181	19799079	236	123477											
ODZ2	57451	broad.mit.edu	37	chr5	167689648	167689648	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaagccagggacgggagaGaggggagccgcctgtggact	19	8	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167689648	C	C	167689648	3	2	143	1	0	0	0	0	1	0	0	0	10930	943	33	4	8245	4	ODZ2	5	167689648	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	6573467	167689648	13225612	237	123478											
HK3	3101	broad.mit.edu	37	chr5	176317681	176317681	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagctggaccacatcctgGccttccacaccactgcacct	7	18	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176317681	A	A	176317681	2	1	143	1	0	0	0	0	0	0	0	1	7259	1190	42	4		4	HK3	5	176317681	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	8628033	176317681	4597579	238	123479											
PROP1	5626	broad.mit.edu	37	chr5	177419796	177419797	+	Missense_Mutation	DNP	GC	TT	TT													atggccggcaggggctgggtGcaaggtagggtaccagtcct							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	177419797	TT	TT	177419796	3	4	143	1	0	0	0	0	1	0	0	0	12663	1319	46	3	89	3	PROP1	5	177419796	Missense_Mutation	DNP	GC	TCGA-49-4514-01A-21D-1855-08	1102115	177419796	3495464	239	123480											
GFPT2	9945	broad.mit.edu	37	chr5	179757681	179757681	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaaggaatgagttagacaGatgggatttgtaactcacca	11	5	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179757681	C	C	179757681	1	2	143	0	1	0	0	0	0	0	0	0	6410	957	33	4		4	GFPT2	5	179757681	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2337885	179757681	1157579	240	123481											
BPHL	670	broad.mit.edu	37	chr6	3127546	3127546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcacggtggtcgcctgGgatcctcgaggctatggaca	13	12	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3127546	T	T	3127546	3	4	143	1	0	0	0	0	1	0	0	0	1498	1241	43	2	292	2	BPHL	6	3127546	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08		3127546	167987521	241	123482											
TUBB2A	7280	broad.mit.edu	37	chr6	3154049	3154049	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagtagaaagaccatgcttGaggacaacagaagttcacta	9	8	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3154049	A	A	3154049	1	1	143	0	1	0	0	0	0	0	0	0	16880	1305	45	4		4	TUBB2A	6	3154049	3'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	26503	3154049	167961018	242	123483											
RIOK1	83732	broad.mit.edu	37	chr6	7395331	7395331	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttcagccaaaatgtctactCcagcagacaaggtcttacgg	9	11	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7395331	G	G	7395331	3	3	143	1	0	0	0	0	1	0	0	0	13488	855	30	4	332	4	RIOK1	6	7395331	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4241282	7395331	163719736	243	123484											
DSP	1832	broad.mit.edu	37	chr6	7577113	7577113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaagggtacaaataacaGtggtaaaagagtgaaatcac	9	4	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577113	T	T	7577113	1	4	143	0	1	0	0	0	0	0	0	0	4821	1044	36	3		3	DSP	6	7577113	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	181782	7577113	163537954	244	123485											
ATXN1	6310	broad.mit.edu	37	chr6	16327410	16327410	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccatcacagaggcccggaCccccgaaggatcacgactgc	11	16	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16327410	T	T	16327410	3	4	143	1	0	0	0	0	1	0	0	0	1213	507	18	4	1323	4	ATXN1	6	16327410	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	8750297	16327410	154787657	245	123486											
MRS2	57380	broad.mit.edu	37	chr6	24403518	24403518	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggtcttgcagtgaccttaGactgctgccccagccgtccg	11	15	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24403518	C	C	24403518	1	2	143	0	1	0	0	0	0	0	0	0	9945	957	33	4		4	MRS2	6	24403518	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	8076108	24403518	146711549	246	123487											
SLC17A3	10786	broad.mit.edu	37	chr6	25862233	25862233	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagatgatgccttggatttGaggagaccagtcatacacag	11	7	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25862233	C	C	25862233	1	2	143	0	1	0	0	0	0	0	0	0	14531	1299	45	4		4	SLC17A3	6	25862233	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1458715	25862233	145252834	247	123488											
HIST1H2BB	3018	broad.mit.edu	37	chr6	26043664	26043664	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggcgagaagcctcgcccgcGatgcgctcgaagatgtcgtt	14	12	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26043664	A	A	26043664	2	1	143	1	0	0	0	0	0	0	0	1	7208	1048	37	4		4	HIST1H2BB	6	26043664	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	181431	26043664	145071403	248	123489											
OR2B6	26212	broad.mit.edu	37	chr6	27925441	27925441	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgcaccagagactctgCctccagttggcagctgcatc	9	14	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27925441	A	A	27925441	4	1	143	1	0	0	0	0	0	1	0	0	11085	747	26	3	425	3	OR2B6	6	27925441	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1881777	27925441	143189626	249	123490											
OR12D2	26529	broad.mit.edu	37	chr6	29364387	29364387	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacagtactctccttccaaGtatctttggcttggtgagaa	8	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29364387	C	C	29364387	1	2	143	0	1	0	0	0	0	0	0	0	11025	1044	36	4		4	OR12D2	6	29364387	5'Flank	SNP	G	TCGA-49-4514-01A-21D-1855-08	1438946	29364387	141750680	250	123491											
CCHCR1	54535	broad.mit.edu	37	chr6	31125269	31125269	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagagttctctccatggctCagcaaggcctgagggaagcc	12	13	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31125269	T	T	31125269	1	4	143	0	1	0	0	0	0	0	0	0	2905	835	29	4		4	CCHCR1	6	31125269	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1760882	31125269	139989798	251	123492											
HLA-C	3107	broad.mit.edu	37	chr6	31237199	31237199	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagacctggtcagagccCgcaggagatgtgggacaaga	14	8	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31237199	A	A	31237199	1	1	143	0	1	0	0	0	0	0	0	0	7264	667	23	1		1	HLA-C	6	31237199	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	111930	31237199	139877868	252	123493											
C6orf48	50854	broad.mit.edu	37	chr6	31805197	31805197	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtggagagccatgcctgttCtccttccttgctatggtgag	13	10	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31805197	T	T	31805197	3	4	143	1	0	0	0	0	1	0	0	0	2388	913	32	4	94	4	C6orf48	6	31805197	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	567998	31805197	139309870	253	123494											
CFB	629	broad.mit.edu	37	chr6	31918140	31918140	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgacagcagcacattgtttCactgtggatgacaaggaaca	10	9	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31918140	T	T	31918140	2	4	143	1	0	0	0	0	0	0	0	1	3308	825	29	4		4	CFB	6	31918140	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	112943	31918140	139196927	254	123495											
TNXB	7148	broad.mit.edu	37	chr6	32017396	32017396	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggagggagagagagtgagGgggatgtccttgggtcctgg	21	4	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32017396	A	A	32017396	1	1	143	0	1	0	0	0	0	0	0	0	16469	1247	43	4		4	TNXB	6	32017396	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	99256	32017396	139097671	255	123496											
ATF6B	1388	broad.mit.edu	37	chr6	32086644	32086644	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctaacttgagctcgctgttCtaaggtacaaagaaggagac	10	9	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32086644	T	T	32086644	5	4	143	1	0	0	0	0	0	0	1	0	1089	927	32	4	991	4	ATF6B	6	32086644	Splice_Site	SNP	C	TCGA-49-4514-01A-21D-1855-08	69248	32086644	139028423	256	123497											
PSMB8	5696	broad.mit.edu	37	chr6	32808690	32808690	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcttaggtccctgagtcGgccaagacctcccagaggag	14	12	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32808690	A	A	32808690	1	1	143	0	1	0	0	0	0	0	0	0	12789	1131	39	4		4	PSMB8	6	32808690	3'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	722046	32808690	138306377	257	123498											
DAXX	1616	broad.mit.edu	37	chr6	33289672	33289672	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcatcttcgtcatcatcatCcagcacgatgatgctgttag	7	11	5	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33289672	T	T	33289672	3	4	143	1	0	0	0	0	1	0	0	0	4276	855	30	4	2219	4	DAXX	6	33289672	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	480982	33289672	137825395	258	123499											
DNAH8	1769	broad.mit.edu	37	chr6	38743851	38743851	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgatttaagttcctctttCacattgaccaaacatatttg	4	8	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38743851	G	G	38743851	1	3	143	0	1	0	0	0	0	0	0	0	4647	841	29	4		4	DNAH8	6	38743851	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	5454179	38743851	132371216	259	123500											
PTK7	5754	broad.mit.edu	37	chr6	43106763	43106763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatgggcggggccttccCtccacttgccctcttctgtg	13	14	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43106763	A	A	43106763	1	1	143	0	1	0	0	0	0	0	0	0	12871	696	24	2		2	PTK7	6	43106763	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	4362912	43106763	128008304	260	123501											
SPATS1	221409	broad.mit.edu	37	chr6	44336165	44336165	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaactccaggcgacaatccAtatatgtacccagaacagag	7	11	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44336165	G	G	44336165	2	3	143	1	0	0	0	0	0	0	0	1	15134	204	8	5		5	SPATS1	6	44336165	Silent	SNP	A	TCGA-49-4514-01A-21D-1855-08	1229402	44336165	126778902	261	123502											
GPR115	221393	broad.mit.edu	37	chr6	47681809	47681809	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaatggtacagattccCaggcaagagctaaggaagct	12	7	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47681809	A	A	47681809	2	1	143	1	0	0	0	0	0	0	0	1	6697	581	21	2		2	GPR115	6	47681809	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	3345644	47681809	123433258	262	123503											
GFRAL	389400	broad.mit.edu	37	chr6	55196612	55196612	+	Frame_Shift_Del	DEL	C	-	-													tgcaaatggatgtaaacatgCttggagagtaatggaagatg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55196612	-	-	55196612	7	5	143	1	0	1	0	1	0	0	0	0	6415	797	28	0	128	0	GFRAL	6	55196612	Frame_Shift_Del	DEL	C	TCGA-49-4514-01A-21D-1855-08	7514803	55196612	115918455	263	123504											
BEND6	221336	broad.mit.edu	37	chr6	56857323	56857323	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacccggaaagaaaacagcCgacttcgacagtctttggtc	9	12	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56857323	T	T	56857323	4	4	143	1	0	0	0	0	0	1	0	0	1407	644	23	4	274	4	BEND6	6	56857323	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1660711	56857323	114257744	264	123505											
COL19A1	1310	broad.mit.edu	37	chr6	70642594	70642594	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagcttcctttttctttctGattaaattactgtagttctt	4	7	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70642594	T	T	70642594	1	4	143	0	1	0	0	0	0	0	0	0	3708	1305	45	3		3	COL19A1	6	70642594	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	13785271	70642594	100472473	265	123506											
COL19A1	1310	broad.mit.edu	37	chr6	70856882	70856882	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatagaaaggtcagagacgGaaatacaaataaacactatc	8	6	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70856882	A	A	70856882	1	1	143	0	1	0	0	0	0	0	0	0	3708	1189	41	4		4	COL19A1	6	70856882	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	214288	70856882	100258185	266	123507											
MTO1	25821	broad.mit.edu	37	chr6	74175962	74175962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaatccttcctttggtgGcatcggaaagggacatttaa	10	7	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74175962	T	T	74175962	3	4	143	1	0	0	0	0	1	0	0	0	10047	1203	42	3	254	3	MTO1	6	74175962	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3319080	74175962	96939105	267	123508											
EPHA7	2045	broad.mit.edu	37	chr6	94120927	94120927	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatcagtcattcagcaaAaaataacattttgcttttga	6	7	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94120927	G	G	94120927	1	3	143	0	1	0	0	0	0	0	0	0	5214	29	1	5		5	EPHA7	6	94120927	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	19944965	94120927	76994140	268	123509											
EPHA7	2045	broad.mit.edu	37	chr6	94128937	94128937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaataaataagtcagaaCaaactttgctttcccatcac	3	10	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94128937	A	A	94128937	1	1	143	0	1	0	0	0	0	0	0	0	5214	493	17	3		3	EPHA7	6	94128937	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	8010	94128937	76986130	269	123510											
C6orf225	619208	broad.mit.edu	37	chr6	112420622	112420622	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caccaaccaggtaaagtcttCtgtcctcacaagtgaggaga	9	11	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112420622	G	G	112420622	1	3	143	0	1	0	0	0	0	0	0	0	2381	928	32	4		4	C6orf225	6	112420622	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	18291685	112420622	58694445	270	123511											
ROS1	6098	broad.mit.edu	37	chr6	117715578	117715578	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaaaacttgtatgaatgaGaatttatttatttaatgatt	5	2	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117715578	C	C	117715578	1	2	143	0	1	0	0	0	0	0	0	0	13642	957	33	4		4	ROS1	6	117715578	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5294956	117715578	53399489	271	123512											
HSF2	3298	broad.mit.edu	37	chr6	122753015	122753015	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttttcatttttttcccctCagcttgaactcagtataagc	5	10	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122753015	G	G	122753015	1	3	143	0	1	0	0	0	0	0	0	0	7463	841	29	4		4	HSF2	6	122753015	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	5037437	122753015	48362052	272	123513											
LAMA2	3908	broad.mit.edu	37	chr6	129722556	129722556	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgatgagaaagctcagtaaTagaagcaaatactagtactt	8	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129722556	C	C	129722556	1	2	143	0	1	0	0	0	0	0	0	0	8678	1421	49	5		5	LAMA2	6	129722556	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	6969541	129722556	41392511	273	123514											
ARHGAP18	93663	broad.mit.edu	37	chr6	129899655	129899655	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatctgcagcttgttaagtCttctacaatggctttgactt	7	8	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129899655	A	A	129899655	1	1	143	0	1	0	0	0	0	0	0	0	870	928	32	3		3	ARHGAP18	6	129899655	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	177099	129899655	41215412	274	123515											
L3MBTL3	84456	broad.mit.edu	37	chr6	130378627	130378627	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagcggtggcagtgccggcGaagctgttcaaggaggtacg	17	8	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130378627	A	A	130378627	2	1	143	1	0	0	0	0	0	0	0	1	8665	1045	37	4		4	L3MBTL3	6	130378627	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	478972	130378627	40736440	275	123516											
TAAR2	9287	broad.mit.edu	37	chr6	132939094	132939094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaatcagtgatggccatgGagaggatgaggaagttggtt	17	3	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132939094	T	T	132939094	3	4	143	1	0	0	0	0	1	0	0	0	15609	1174	41	3	808	3	TAAR2	6	132939094	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2560467	132939094	38175973	276	123517											
EYA4	2070	broad.mit.edu	37	chr6	133802457	133802457	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaaaagttctgactgactTgtgtgtgcttgggattataa	10	5	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133802457	A	A	133802457	1	1	143	0	1	0	0	0	0	0	0	0	5374	1827	63	5		5	EYA4	6	133802457	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	863363	133802457	37312610	277	123518											
BCLAF1	9774	broad.mit.edu	37	chr6	136599636	136599636	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctatatgaccggcgagatCtgcttctggatctttgagaa	10	8	4	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136599636	T	T	136599636	3	4	143	1	0	0	0	0	1	0	0	0	1388	913	32	4	2419	4	BCLAF1	6	136599636	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2797179	136599636	34515431	278	123519											
MAP3K5	4217	broad.mit.edu	37	chr6	137041542	137041542	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgacaaaccggtatccctGaaatgctgatgttaaaatga	9	7	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137041542	A	A	137041542	1	1	143	0	1	0	0	0	0	0	0	0	9345	1305	45	4		4	MAP3K5	6	137041542	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	441906	137041542	34073525	279	123520											
GRM1	2911	broad.mit.edu	37	chr6	146480566	146480566	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgcccattctgacaaaatCtacagcaacgctggggagaa	9	11	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146480566	A	A	146480566	2	1	143	1	0	0	0	0	0	0	0	1	6862	903	32	3		3	GRM1	6	146480566	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	9439024	146480566	24634501	280	123521											
PDE10A	10846	broad.mit.edu	37	chr6	165827131	165827131	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcggctgacgatgggcatgCacaggatgttccgcgtggtg	16	10	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165827131	G	G	165827131	3	3	143	1	0	0	0	0	1	0	0	0	11724	710	25	4	1273	4	PDE10A	6	165827131	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	19346565	165827131	5287936	281	123522											
THBS2	7058	broad.mit.edu	37	chr6	169648870	169648870	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagctgggccgtgaggaagAagccctccttctgccgcatg	14	12	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169648870	C	C	169648870	3	2	143	1	0	0	0	0	1	0	0	0	15977	246	9	5	3347	5	THBS2	6	169648870	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	3821739	169648870	1466197	282	123523											
EIF3B	8662	broad.mit.edu	37	chr7	2408975	2408975	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagagcagtggctgtgcaGagggagcgctcagcgtcagc	16	12	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2408975	A	A	2408975	1	1	143	0	1	0	0	0	0	0	0	0	5053	957	33	4		4	EIF3B	7	2408975	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08		2408975	156729688	283	123524											
EIF3B	8662	broad.mit.edu	37	chr7	2409266	2409266	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaagctccattggcagaaGaacggagactacttgtgtgt	12	8	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2409266	A	A	2409266	2	1	143	1	0	0	0	0	0	0	0	1	5053	933	33	4		4	EIF3B	7	2409266	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	291	2409266	156729397	284	123525											
TNRC18	84629	broad.mit.edu	37	chr7	5360157	5360157	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggccccgcccctccccCctcaccgcctcctgcagcaa	7	25	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5360157	A	A	5360157	1	1	143	0	1	0	0	0	0	0	0	0	16462	638	22	2		2	TNRC18	7	5360157	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2950891	5360157	153778506	285	123526											
THSD7A	221981	broad.mit.edu	37	chr7	11630169	11630169	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctcgggtctggatgccCcctccacagagggccgtctg	12	16	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11630169	A	A	11630169	2	1	143	1	0	0	0	0	0	0	0	1	16002	610	22	2		2	THSD7A	7	11630169	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	6270012	11630169	147508494	286	123527											
GPNMB	10457	broad.mit.edu	37	chr7	23309545	23309545	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaccttcctctctccccttCtctgtgccctgtgcgccctc	6	20	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23309545	T	T	23309545	1	4	143	0	1	0	0	0	0	0	0	0	6685	928	32	4		4	GPNMB	7	23309545	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	11679376	23309545	135829118	287	123528											
GHRHR	2692	broad.mit.edu	37	chr7	31008552	31008552	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcccaacaccaccctggGtatggggcctaggaggcagg	15	12	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31008552	T	T	31008552	5	4	143	1	0	0	0	0	0	0	1	0	6437	1275	44	3	167	3	GHRHR	7	31008552	Splice_Site	SNP	G	TCGA-49-4514-01A-21D-1855-08	7699007	31008552	128130111	288	123529											
TBX20	57057	broad.mit.edu	37	chr7	35293192	35293192	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatggagaaggcgttggcccGagaggagagttggggcttgg	20	5	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35293192	A	A	35293192	3	1	143	1	0	0	0	0	1	0	0	0	15778	1057	37	4	1336	4	TBX20	7	35293192	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4284640	35293192	123845471	289	123530											
ZMIZ2	83637	broad.mit.edu	37	chr7	44802454	44802454	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccctggcccaagtccccctGatgacatcctcccgttgtat	7	18	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44802454	A	A	44802454	1	1	143	0	1	0	0	0	0	0	0	0	17823	1305	45	4		4	ZMIZ2	7	44802454	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	9509262	44802454	114336209	290	123531											
DDC	1644	broad.mit.edu	37	chr7	50596840	50596840	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgctgtttggtttggtttGaatttgacataaaaccaaac	9	5	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50596840	C	C	50596840	1	2	143	0	1	0	0	0	0	0	0	0	4358	1305	45	4		4	DDC	7	50596840	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5794386	50596840	108541823	291	123532											
COBL	23242	broad.mit.edu	37	chr7	51096436	51096436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggggtcccctggcagagCtctctgagggtcggcccagg	18	12	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51096436	A	A	51096436	3	1	143	1	0	0	0	0	1	0	0	0	3685	797	28	3	1444	3	COBL	7	51096436	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	499596	51096436	108042227	292	123533											
POM121L12	285877	broad.mit.edu	37	chr7	53103686	53103686	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccttcccggggagaccgctCtggggcgagacctctcctgt	13	16	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103686	A	A	53103686	3	1	143	1	0	0	0	0	1	0	0	0	12336	912	32	3	324	3	POM121L12	7	53103686	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2007250	53103686	106034977	293	123534											
ASL	435	broad.mit.edu	37	chr7	65552720	65552720	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcccacccccccagaactCaactttggggccatcactct	5	20	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65552720	G	G	65552720	2	3	143	1	0	0	0	0	0	0	0	1	1048	813	29	4		4	ASL	7	65552720	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	12449034	65552720	93585943	294	123535											
WBSCR17	64409	broad.mit.edu	37	chr7	70880974	70880974	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggcctgatccgcgctcGcattgagggctggaaggtgg	18	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70880974	T	T	70880974	3	4	143	1	0	0	0	0	1	0	0	0	17391	1087	38	3	703	3	WBSCR17	7	70880974	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	5328254	70880974	88257689	295	123536											
POM121	9883	broad.mit.edu	37	chr7	72410097	72410097	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagatttcctctccttcaGaagtttatagtctgatgagg	10	7	3	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72410097	A	A	72410097	1	1	143	0	1	0	0	0	0	0	0	0	12334	957	33	4		4	POM121	7	72410097	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1529123	72410097	86728566	296	123537											
TRIM50	135892	broad.mit.edu	37	chr7	72732771	72732771	+	Intron	DEL	G	-	-													agctagggcactgttgggaaGgggaaggccctggcgggtat							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72732771	-	-	72732771	6	5	143	0	1	1	0	1	0	0	0	0	16651	1015	35	0		0	TRIM50	7	72732771	Intron	DEL	G	TCGA-49-4514-01A-21D-1855-08	322674	72732771	86405892	297	123538											
CLIP2	7461	broad.mit.edu	37	chr7	73800964	73800964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccgcagggcagatgcgGggggctttcactggggccgt	17	13	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73800964	T	T	73800964	1	4	143	0	1	0	0	0	0	0	0	0	3565	1247	43	2		2	CLIP2	7	73800964	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1068193	73800964	85337699	298	123539											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73935550	73935550	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccaggacagaagcccaCtgggcctggtgggcctctca	13	13	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73935550	G	G	73935550	3	3	143	1	0	0	0	0	1	0	0	0	6933	565	20	4	951	4	GTF2IRD1	7	73935550	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	134586	73935550	85203113	299	123540											
NCF1	653361	broad.mit.edu	37	chr7	74193606	74193606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttctctggtgccagctcCcaagtggtttgacgggcagc	13	11	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74193606	A	A	74193606	3	1	143	1	0	0	0	0	1	0	0	0	10311	623	22	2	247	2	NCF1	7	74193606	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	258056	74193606	84945057	300	123541											
GNAI1	2770	broad.mit.edu	37	chr7	79846625	79846626	+	Frame_Shift_Del	DEL	AC	-	-													tttttccatctcaggatcaaAcacatatgaagaggcagctg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79846626	-	-	79846625	7	5	143	1	0	1	0	1	0	0	0	0	6568	43	2	0	911	0	GNAI1	7	79846625	Frame_Shift_Del	DEL	AC	TCGA-49-4514-01A-21D-1855-08	5653019	79846625	79292038	301	123542											
SEMA3E	9723	broad.mit.edu	37	chr7	83098449	83098449	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcttcatgaaccaaaTtgcatacatacttttataag	3	7	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83098449	C	C	83098449	1	2	143	0	1	0	0	0	0	0	0	0	14141	1508	52	5		5	SEMA3E	7	83098449	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	3251824	83098449	76040214	302	123543											
SEMA3E	9723	broad.mit.edu	37	chr7	83277718	83277718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttttttttttttttaaaCaaaaggatctggaaaggtaa	6	3	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83277718	A	A	83277718	1	1	143	0	1	0	0	0	0	0	0	0	14141	493	17	3		3	SEMA3E	7	83277718	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	179269	83277718	75860945	303	123544											
COL1A2	1278	broad.mit.edu	37	chr7	94026967	94026967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaattaggtaattcaattcTataaacttgtttctctattt	3	5	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94026967	C	C	94026967	1	2	143	0	1	0	0	0	0	0	0	0	3710	1537	53	5		5	COL1A2	7	94026967	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	10749249	94026967	65111696	304	123545											
TRRAP	8295	broad.mit.edu	37	chr7	98609988	98609988	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggctgtgactgtggccgCcacggccacccggaatgtga	14	14	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98609988	G	G	98609988	1	3	143	0	1	0	0	0	0	0	0	0	16726	754	26	4		4	TRRAP	7	98609988	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	4583021	98609988	60528675	305	123546											
PTCD1	26024	broad.mit.edu	37	chr7	99040744	99040744	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacagacttttgttggaactGaagaaatcccaaacctagct	8	9	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99040744	C	C	99040744	1	2	143	0	1	0	0	0	0	0	0	0	12833	1305	45	4		4	PTCD1	7	99040744	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	430756	99040744	60097919	306	123547											
CYP3A43	64816	broad.mit.edu	37	chr7	99445922	99445922	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgtcatgagcccctcCagctgcctgcagtggagctg	13	13	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99445922	T	T	99445922	1	4	143	0	1	0	0	0	0	0	0	0	4212	609	21	4		4	CYP3A43	7	99445922	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	405178	99445922	59692741	307	123548											
MEPCE	56257	broad.mit.edu	37	chr7	100028300	100028300	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctaagtcatccccccttcCggccaaagggcgagatccgg	10	17	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100028300	T	T	100028300	3	4	143	1	0	0	0	0	1	0	0	0	9570	652	23	4	661	4	MEPCE	7	100028300	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	582378	100028300	59110363	308	123549											
TSC22D4	81628	broad.mit.edu	37	chr7	100074837	100074837	+	Intron	SNP	A	G	G													agaggggggggaggaggaggAaggaggctcaagatagaggt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100074837	G	G	100074837	1	3	143	0	1	0	0	0	0	0	0	0	16735	261	9	5		5	TSC22D4	7	100074837	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	46537	100074837	59063826	309	123550	536	2									
TSC22D4	81628	broad.mit.edu	37	chr7	100074841	100074841	+	Intron	SNP	A	C	C													gggggggaggaggaggaaggAggctcaagatagaggttagg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100074841	C	C	100074841	1	2	143	0	1	0	0	0	0	0	0	0	16735	319	11	5		5	TSC22D4	7	100074841	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	4	100074841	59063822	310	123551	536	2									
EPHB4	2050	broad.mit.edu	37	chr7	100410537	100410537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgctccgtgtagccaccCttcagggtcttgattgccac	10	15	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100410537	A	A	100410537	3	1	143	1	0	0	0	0	1	0	0	0	5219	680	24	2	1037	2	EPHB4	7	100410537	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	335696	100410537	58728126	311	123552											
RELN	5649	broad.mit.edu	37	chr7	103202032	103202032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcaccattcagattccCcctctctgcaccatacactt	4	16	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103202032	A	A	103202032	3	1	143	1	0	0	0	0	1	0	0	0	13328	623	22	2	5026	2	RELN	7	103202032	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2791495	103202032	55936631	312	123553											
RELN	5649	broad.mit.edu	37	chr7	103207077	103207078	+	Frame_Shift_Ins	INS	-	T	T													ttgccaccatcgaaatgccgINSttgcaggtgtcttcgcgtcc							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103207078	T	T	103207077	7	5	143	1	0	1	1	0	0	0	0	0	13328	1145	40	0	5800	0	RELN	7	103207077	Frame_Shift_Ins	INS	-	TCGA-49-4514-01A-21D-1855-08	5045	103207077	55931586	313	123554											
DOCK4	9732	broad.mit.edu	37	chr7	111555894	111555894	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatactccatgagaaaataCtgatgaatattcccttctga	7	8	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111555894	G	G	111555894	3	3	143	1	0	0	0	0	1	0	0	0	4729	565	20	4	4928	4	DOCK4	7	111555894	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	8348817	111555894	47582769	314	123555											
SND1	27044	broad.mit.edu	37	chr7	127729612	127729612	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagtgcctgctcaacgtGgaacacctgagtgccggctg	12	13	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127729612	T	T	127729612	2	4	143	1	0	0	0	0	0	0	0	1	14958	1335	47	2		2	SND1	7	127729612	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	16173718	127729612	31409051	315	123556											
ZC3HC1	51530	broad.mit.edu	37	chr7	129665849	129665849	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actaattcttattatccattCtcctcgcaccatcccccacc	1	18	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129665849	T	T	129665849	1	4	143	0	1	0	0	0	0	0	0	0	17703	928	32	4		4	ZC3HC1	7	129665849	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1936237	129665849	29472814	316	123557											
TMEM209	84928	broad.mit.edu	37	chr7	129825206	129825206	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagaggtagaatctgggctCcctacaattgttaagataaa	11	6	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129825206	G	G	129825206	2	3	143	1	0	0	0	0	0	0	0	1	16257	869	30	4		4	TMEM209	7	129825206	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	159357	129825206	29313457	317	123558											
MKLN1	4289	broad.mit.edu	37	chr7	131083888	131083888	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttagtaaactgcttggcacAtagtgttaataaatgctcag	9	6	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131083888	G	G	131083888	1	3	143	0	1	0	0	0	0	0	0	0	9696	232	8	5		5	MKLN1	7	131083888	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	1258682	131083888	28054775	318	123559											
DENND2A	27147	broad.mit.edu	37	chr7	140219376	140219376	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagggaaccggctgggactCcgagacagacagctcagagg	17	10	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140219376	A	A	140219376	1	1	143	0	1	0	0	0	0	0	0	0	4469	870	30	3		3	DENND2A	7	140219376	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	9135488	140219376	18919287	319	123560											
OR2A14	135941	broad.mit.edu	37	chr7	143826661	143826661	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttcctgggtgttcagcttCctcctggctctggtcccttt	10	14	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143826661	T	T	143826661	2	4	143	1	0	0	0	0	0	0	0	1	11070	854	30	4		4	OR2A14	7	143826661	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	3607285	143826661	15312002	320	123561											
CNTNAP2	26047	broad.mit.edu	37	chr7	146997306	146997306	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aattttgctattctcaccatCgatggagatgaagcatcagc	8	9	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146997306	G	G	146997306	3	3	143	1	0	0	0	0	1	0	0	0	3679	874	31	4	1456	4	CNTNAP2	7	146997306	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3170645	146997306	12141357	321	123562											
PDIA4	9601	broad.mit.edu	37	chr7	148702338	148702338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggatggcggcattgacatCctccccactctcgctgagcc	10	16	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148702338	A	A	148702338	3	1	143	1	0	0	0	0	1	0	0	0	11764	855	30	3	528	3	PDIA4	7	148702338	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1705032	148702338	10436325	322	123563											
ACCN3	9311	broad.mit.edu	37	chr7	150749496	150749496	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctctgaccctctcgtcctCacacagcttcaggaagggct	8	16	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150749496	T	T	150749496	1	4	143	0	1	0	0	0	0	0	0	0	130	841	29	4		4	ACCN3	7	150749496	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2047158	150749496	8389167	323	123564											
RP1L1	94137	broad.mit.edu	37	chr8	10468217	10468217	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggcaggagacccaaggtCttcctcaaataactgcagac	10	12	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10468217	T	T	10468217	3	4	143	1	0	0	0	0	1	0	0	0	13644	913	32	4	3815	4	RP1L1	8	10468217	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08		10468217	135895805	324	123565											
TUSC3	7991	broad.mit.edu	37	chr8	15398024	15398024	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgggagctttcccttccttCtcctgctgctgctgctctgc	9	17	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15398024	T	T	15398024	3	4	143	1	0	0	0	0	1	0	0	0	16904	913	32	4	87	4	TUSC3	8	15398024	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4929807	15398024	130965998	325	123566											
XPO7	23039	broad.mit.edu	37	chr8	21833878	21833878	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttacaggcttcaggaaaGaatctaaacttgaatgatga	8	5	2	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21833878	A	A	21833878	2	1	143	1	0	0	0	0	0	0	0	1	17576	933	33	4		4	XPO7	8	21833878	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	6435854	21833878	124530144	326	123567											
ADAM7	8756	broad.mit.edu	37	chr8	24304566	24304566	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctttcaattcatctttatCagtattttgcattttggctg	5	8	5	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24304566	G	G	24304566	1	3	143	0	1	0	0	0	0	0	0	0	251	841	29	4		4	ADAM7	8	24304566	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2470688	24304566	122059456	327	123568											
ADAM32	203102	broad.mit.edu	37	chr8	39068732	39068732	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaatttcatttcaaatgtGggtgtcaaatgtcttcagaa	7	6	5	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39068732	T	T	39068732	2	4	143	1	0	0	0	0	0	0	0	1	249	1335	47	2		2	ADAM32	8	39068732	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	14764166	39068732	107295290	328	123569											
ANK1	286	broad.mit.edu	37	chr8	41580611	41580611	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggacctggagccctgtctaGaaaatgcgcctgacaggaag	13	10	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41580611	C	C	41580611	1	2	143	0	1	0	0	0	0	0	0	0	620	957	33	4		4	ANK1	8	41580611	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2511879	41580611	104783411	329	123570											
RGS20	8601	broad.mit.edu	37	chr8	54799999	54799999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagggttcaacctctaggGtgatgatcgtccctgtaagg	12	10	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54799999	A	A	54799999	1	1	143	0	1	0	0	0	0	0	0	0	13412	1276	44	4		4	RGS20	8	54799999	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	13219388	54799999	91564023	330	123571											
RPS20	6224	broad.mit.edu	37	chr8	56986128	56986128	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggaaccgcaatctaccaccGatttctatgtgcgtttgtag	9	10	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56986128	C	C	56986128	1	2	143	0	1	0	0	0	0	0	0	0	13743	1073	37	4		4	RPS20	8	56986128	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2186129	56986128	89377894	331	123572											
ZFHX4	79776	broad.mit.edu	37	chr8	77767112	77767112	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagggtcgtgcaagtctGgttccagaatacacgagcgc	12	9	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767112	A	A	77767112	4	1	143	1	0	0	0	0	0	1	0	0	17761	1357	47	4	7989	4	ZFHX4	8	77767112	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	20780984	77767112	68596910	332	123573											
ZFHX4	79776	broad.mit.edu	37	chr8	77767611	77767611	+	Frame_Shift_Del	DEL	G	-	-													gacgccaccaccggagacgaGggaaacactgaaatggaaag							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77767611	-	-	77767611	7	5	143	1	0	1	0	1	0	0	0	0	17761	991	35	0	8488	0	ZFHX4	8	77767611	Frame_Shift_Del	DEL	G	TCGA-49-4514-01A-21D-1855-08	499	77767611	68596411	333	123574											
PTDSS1	9791	broad.mit.edu	37	chr8	97299165	97299165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttagtgtctggttttgGcaatgccattcgagtctaat	9	7	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97299165	T	T	97299165	1	4	143	0	1	0	0	0	0	0	0	0	12842	1218	42	3		3	PTDSS1	8	97299165	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	19531554	97299165	49064857	334	123575											
VPS13B	157680	broad.mit.edu	37	chr8	100821810	100821810	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttaattattcagtgtaaTggagatgaaaataattaata	6	3	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100821810	C	C	100821810	1	2	143	0	1	0	0	0	0	0	0	0	17317	1479	51	5		5	VPS13B	8	100821810	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	3522645	100821810	45542212	335	123576											
FBXO43	286151	broad.mit.edu	37	chr8	101154184	101154184	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagagtaatgttgggcCtttttctttctttccaagat	7	8	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101154184	G	G	101154184	3	3	143	1	0	0	0	0	1	0	0	0	5809	681	24	4	1844	4	FBXO43	8	101154184	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	332374	101154184	45209838	336	123577											
RSPO2	340419	broad.mit.edu	37	chr8	108913185	108913185	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctttcaccatgttactGggaacagatactgggcagag	10	10	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108913185	T	T	108913185	1	4	143	0	1	0	0	0	0	0	0	0	13821	1363	47	2		2	RSPO2	8	108913185	3'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	7759001	108913185	37450837	337	123578											
CSMD3	114788	broad.mit.edu	37	chr8	113349928	113349928	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacaaaaccatttcgaaacgGgcgtggatcaggacagcttt	10	9	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113349928	C	C	113349928	3	2	143	1	0	0	0	0	1	0	0	0	3980	1232	43	4	4554	4	CSMD3	8	113349928	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4436743	113349928	33014094	338	123579											
CSMD3	114788	broad.mit.edu	37	chr8	113392716	113392716	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatgagaaggcaagacaatGaccacataataagtactata	7	6	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113392716	C	C	113392716	1	2	143	0	1	0	0	0	0	0	0	0	3980	1305	45	4		4	CSMD3	8	113392716	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	42788	113392716	32971306	339	123580											
CSMD3	114788	broad.mit.edu	37	chr8	113702264	113702264	+	Missense_Mutation	SNP	C	A	A													gtgtaccaggatcaccacaaCtttctttctcaatttctgga							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113702264	A	A	113702264	3	1	143	1	0	0	0	0	1	0	0	0	3980	565	20	3	9367	3	CSMD3	8	113702264	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	309548	113702264	32661758	340	123581	537	2									
CSMD3	114788	broad.mit.edu	37	chr8	113702266	113702266	+	Missense_Mutation	SNP	T	A	A													gtaccaggatcaccacaactTtctttctcaatttctggaaa							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113702266	A	A	113702266	3	1	143	1	0	0	0	0	1	0	0	0	3980	1838	64	5	9369	5	CSMD3	8	113702266	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	2	113702266	32661756	341	123582	537	2									
COL14A1	7373	broad.mit.edu	37	chr8	121292901	121292901	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacagggaaagagtatgtTtgtgaaatatccgaattaga	12	3	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121292901	C	C	121292901	1	2	143	0	1	0	0	0	0	0	0	0	3703	1856	64	5		5	COL14A1	8	121292901	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	7590635	121292901	25071121	342	123583											
FER1L6	654463	broad.mit.edu	37	chr8	125107185	125107185	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccctcaaggttttacactCttgggaggatatcccggaag	12	10	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125107185	A	A	125107185	3	1	143	1	0	0	0	0	1	0	0	0	5872	913	32	3	4735	3	FER1L6	8	125107185	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3814284	125107185	21256837	343	123584											
FER1L6	654463	broad.mit.edu	37	chr8	125113293	125113293	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatgattatactgatgcctgGagaatgtactctgagtgttt	10	5	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125113293	T	T	125113293	1	4	143	0	1	0	0	0	0	0	0	0	5872	1189	41	3		3	FER1L6	8	125113293	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6108	125113293	21250729	344	123585											
GSDMC	56169	broad.mit.edu	37	chr8	130761682	130761682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccctgaacttctggccCctgggaagttctcaccagct	8	15	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130761682	A	A	130761682	1	1	143	0	1	0	0	0	0	0	0	0	6884	638	22	2		2	GSDMC	8	130761682	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	5648389	130761682	15602340	345	123586											
EFR3A	23167	broad.mit.edu	37	chr8	132967937	132967937	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgccattttaacatttctAaaaagtaaagtatattttgt	4	4	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132967937	T	T	132967937	1	4	143	0	1	0	0	0	0	0	0	0	4998	377	13	5		5	EFR3A	8	132967937	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	2206255	132967937	13396085	346	123587											
COL22A1	169044	broad.mit.edu	37	chr8	139647221	139647221	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcattcaaatgtcaaggccGaaagaggaggggattaaaga	13	5	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139647221	A	A	139647221	1	1	143	0	1	0	0	0	0	0	0	0	3713	1073	37	4		4	COL22A1	8	139647221	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6679284	139647221	6716801	347	123588											
SLC45A4	57210	broad.mit.edu	37	chr8	142229749	142229749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggtgcggcagcgttacCggcagagaaggcgtggatgt	17	9	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142229749	A	A	142229749	3	1	143	1	0	0	0	0	1	0	0	0	14757	666	23	1	1963	1	SLC45A4	8	142229749	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2582528	142229749	4134273	348	123589											
CYP11B2	1585	broad.mit.edu	37	chr8	143998972	143998972	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggtcctgggcagcagGggcagggatctgggtgttcc	20	9	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143998972	A	A	143998972	1	1	143	0	1	0	0	0	0	0	0	0	4179	1247	43	4		4	CYP11B2	8	143998972	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1769223	143998972	2365050	349	123590											
FAM83H	286077	broad.mit.edu	37	chr8	144810988	144810988	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgcggaggacgcagggatgtGaggtctgcaaggacctgggc	19	9	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144810988	C	C	144810988	1	2	143	0	1	0	0	0	0	0	0	0	5693	1305	45	4		4	FAM83H	8	144810988	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	812016	144810988	1553034	350	123591											
PLEC	5339	broad.mit.edu	37	chr8	145049532	145049532	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggacctcagcgtcctcaccCgacatggcctcctggaaggg	12	16	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145049532	A	A	145049532	2	1	143	1	0	0	0	0	0	0	0	1	12147	639	23	1		1	PLEC	8	145049532	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	238544	145049532	1314490	351	123592											
HSF1	3297	broad.mit.edu	37	chr8	145537624	145537624	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgagaccagcgggagtgctCacaataccgtctccacccca	9	16	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145537624	G	G	145537624	1	3	143	0	1	0	0	0	0	0	0	0	7462	841	29	4		4	HSF1	8	145537624	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	488092	145537624	826398	352	123593											
JAK2	3717	broad.mit.edu	37	chr9	5126726	5126726	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggaacaataatgtaaatCaacgcccctcctttagggat	8	10	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5126726	T	T	5126726	4	4	143	1	0	0	0	0	0	1	0	0	8008	827	29	4	3424	4	JAK2	9	5126726	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08		5126726	136086705	353	123594											
ERMP1	79956	broad.mit.edu	37	chr9	5805687	5805687	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacagcactaataaacgcCgagcaaagtccttggtaagt	9	10	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5805687	T	T	5805687	2	4	143	1	0	0	0	0	0	0	0	1	5278	639	23	4		4	ERMP1	9	5805687	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	678961	5805687	135407744	354	123595											
PTPRD	5789	broad.mit.edu	37	chr9	8713574	8713574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgctgtgactcccggagCggcacccacaacatgtaccg	11	16	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8713574	A	A	8713574	1	1	143	0	1	0	0	0	0	0	0	0	12907	783	27	3		3	PTPRD	9	8713574	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2907887	8713574	132499857	355	123596											
DENND4C	55667	broad.mit.edu	37	chr9	19324446	19324446	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattcgtttcattgaagaaTgcagttttgtaagtgataaa	8	3	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19324446	C	C	19324446	3	2	143	1	0	0	0	0	1	0	0	0	4475	1464	51	5	1220	5	DENND4C	9	19324446	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	10610872	19324446	121888985	356	123597											
IFNA21	3452	broad.mit.edu	37	chr9	21166475	21166475	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcaggagaaaggagagattCttcccatttgtgccaggagt	14	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21166475	A	A	21166475	3	1	143	1	0	0	0	0	1	0	0	0	7608	913	32	3	436	3	IFNA21	9	21166475	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1842029	21166475	120046956	357	123598											
C9orf11	54586	broad.mit.edu	37	chr9	27296927	27296927	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaatttttcatgattatgGgtcatccttcttacctacta	4	10	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27296927	A	A	27296927	1	1	143	0	1	0	0	0	0	0	0	0	2474	1247	43	4		4	C9orf11	9	27296927	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6130452	27296927	113916504	358	123599											
TRPM6	140803	broad.mit.edu	37	chr9	77435402	77435402	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggaatgagccggcaacatCagtacaagaaaacaccccat	10	11	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77435402	T	T	77435402	1	4	143	0	1	0	0	0	0	0	0	0	16715	841	29	4		4	TRPM6	9	77435402	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	50138475	77435402	63778029	359	123600											
GCNT1	2650	broad.mit.edu	37	chr9	79117887	79117887	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagccgggttcaggctgaccTcaactgcatgaaggatctct	12	11	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79117887	C	C	79117887	3	2	143	1	0	0	0	0	1	0	0	0	6362	1551	54	5	592	5	GCNT1	9	79117887	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	1682485	79117887	62095544	360	123601											
SYK	6850	broad.mit.edu	37	chr9	93629456	93629456	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcaagaatcaaatcatactCcttcccaaagcctggccaca	4	15	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93629456	G	G	93629456	3	3	143	1	0	0	0	0	1	0	0	0	15557	855	30	4	912	4	SYK	9	93629456	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	14511569	93629456	47583975	361	123602											
PHF2	5253	broad.mit.edu	37	chr9	96427980	96427980	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccctagctccaaggctctCaggcccccgacgagccctgg	11	18	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96427980	G	G	96427980	2	3	143	1	0	0	0	0	0	0	0	1	11925	813	29	4		4	PHF2	9	96427980	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	2798524	96427980	44785451	362	123603											
PTCH1	5727	broad.mit.edu	37	chr9	98218542	98218542	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttcacaaagtttttgcttCaaatgtctcccataccaaag	4	10	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98218542	T	T	98218542	1	4	143	0	1	0	0	0	0	0	0	0	12836	841	29	4		4	PTCH1	9	98218542	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1790562	98218542	42994889	363	123604											
TEX10	54881	broad.mit.edu	37	chr9	103109394	103109394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccaaaacttttaaagagtCctcctgaattccttcagtaa	5	10	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103109394	A	A	103109394	3	1	143	1	0	0	0	0	1	0	0	0	15894	855	30	3	2366	3	TEX10	9	103109394	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4890852	103109394	38104037	364	123605											
IKBKAP	8518	broad.mit.edu	37	chr9	111670594	111670594	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaacctacttgtatctcTtttccaaatgaggagttcta	6	8	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111670594	A	A	111670594	3	1	143	1	0	0	0	0	1	0	0	0	7680	1609	56	5	2647	5	IKBKAP	9	111670594	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	8561200	111670594	29542837	365	123606											
PTPN3	5774	broad.mit.edu	37	chr9	112168882	112168882	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatccccttcgttcagcttaGgaatgcaggtgtccgcctgg	12	12	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112168882	C	C	112168882	3	2	143	1	0	0	0	0	1	0	0	0	12897	1000	35	4	1125	4	PTPN3	9	112168882	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	498288	112168882	29044549	366	123607											
DFNB31	25861	broad.mit.edu	37	chr9	117241034	117241034	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacacagacagcaccagcttCttggagcccttcagagccta	8	14	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117241034	T	T	117241034	2	4	143	1	0	0	0	0	0	0	0	1	4495	912	32	4		4	DFNB31	9	117241034	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	5072152	117241034	23972397	367	123608											
DBC1	1620	broad.mit.edu	37	chr9	122000939	122000939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggcttcctaccttgaaGgtgcagtttgctctccgtgc	10	13	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122000939	T	T	122000939	3	4	143	1	0	0	0	0	1	0	0	0	4280	1000	35	2	1622	2	DBC1	9	122000939	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4759905	122000939	19212492	368	123609											
C5	727	broad.mit.edu	37	chr9	123782507	123782507	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atactgtgatgtaatgctttCtgtaaaacatacctttcaaa	5	7	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123782507	T	T	123782507	1	4	143	0	1	0	0	0	0	0	0	0	2303	928	32	4		4	C5	9	123782507	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1781568	123782507	17430924	369	123610											
MORN5	254956	broad.mit.edu	37	chr9	124962075	124962075	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccatcgacggaccatcccAgtcccaacgccccacctggg	10	19	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124962075	T	T	124962075	1	4	143	0	1	0	0	0	0	0	0	0	9805	203	7	5		5	MORN5	9	124962075	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	1179568	124962075	16251356	370	123611											
ZNF79	7633	broad.mit.edu	37	chr9	130207042	130207042	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattcagcaccagaggattCacaccggggagaagccctac	10	13	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130207042	T	T	130207042	3	4	143	1	0	0	0	0	1	0	0	0	18290	826	29	4	1081	4	ZNF79	9	130207042	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5244967	130207042	11006389	371	123612											
NTNG2	84628	broad.mit.edu	37	chr9	135042216	135042216	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcctctgcagactgcgcaGccatgctgcatctgctggcg	13	15	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135042216	C	C	135042216	1	2	143	0	1	0	0	0	0	0	0	0	10800	986	34	4		4	NTNG2	9	135042216	5'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	4835174	135042216	6171215	372	123613											
DDX31	64794	broad.mit.edu	37	chr9	135470216	135470216	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcaatccactgccacccGgggcttccaggttccactcg	8	17	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135470216	A	A	135470216	1	1	143	0	1	0	0	0	0	0	0	0	4389	1131	39	4		4	DDX31	9	135470216	3'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	428000	135470216	5743215	373	123614											
SARDH	1757	broad.mit.edu	37	chr9	136595421	136595421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggggacactatttctgCcagcagcaggtcccctgcga	12	13	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136595421	A	A	136595421	1	1	143	0	1	0	0	0	0	0	0	0	13953	754	26	3		3	SARDH	9	136595421	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1125205	136595421	4618010	374	123615											
WDR5	11091	broad.mit.edu	37	chr9	137007852	137007852	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtctcggccgtaagtccctCtgacacggatggggtggtgt	15	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137007852	G	G	137007852	1	3	143	0	1	0	0	0	0	0	0	0	17430	928	32	4		4	WDR5	9	137007852	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	412431	137007852	4205579	375	123616											
GPSM1	26086	broad.mit.edu	37	chr9	139228961	139228961	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtctgtgcaaggcgggCgacttcaagacaggcgtggc	17	10	2	1	rs138071426		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139228961	T	T	139228961	2	4	143	1	0	0	0	0	0	0	0	1	6800	755	27	4		4	GPSM1	9	139228961	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	2221109	139228961	1984470	376	123617											
NPDC1	56654	broad.mit.edu	37	chr9	139934347	139934347	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtcaggctgggcagtgGgtgggctggggggatacttg	23	5	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139934347	A	A	139934347	1	1	143	0	1	0	0	0	0	0	0	0	10668	1247	43	4		4	NPDC1	9	139934347	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	705386	139934347	1279084	377	123618											
SLC34A3	142680	broad.mit.edu	37	chr9	140128971	140128971	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcgtcttcacggcggccgtCgtgcccctcatgggtgagca	14	14	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140128971	T	T	140128971	2	4	143	1	0	0	0	0	0	0	0	1	14683	871	31	4		4	SLC34A3	9	140128971	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	194624	140128971	1084460	378	123619											
ADARB2	105	broad.mit.edu	37	chr10	1230908	1230908	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgataatctccaggtccgCgctgcccacgacccagttca	9	15	2	1	rs146024921		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1230908	T	T	1230908	3	4	143	1	0	0	0	0	1	0	0	0	283	768	27	4	291	4	ADARB2	10	1230908	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08		1230908	134303839	379	123620											
SFMBT2	57713	broad.mit.edu	37	chr10	7423923	7423923	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaattacctaagagcaatCaaaaaaaaaaaaatcagagc	4	6	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7423923	A	A	7423923	1	1	143	0	1	0	0	0	0	0	0	0	14271	841	29	3		3	SFMBT2	10	7423923	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	6193015	7423923	128110824	380	123621											
CELF2	10659	broad.mit.edu	37	chr10	11363183	11363183	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctcaggtatggcggctctGaatggaggacttggcgccac	14	11	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11363183	C	C	11363183	2	2	143	1	0	0	0	0	0	0	0	1	3246	1277	45	4		4	CELF2	10	11363183	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	3939260	11363183	124171564	381	123622											
BEND7	222389	broad.mit.edu	37	chr10	13494493	13494493	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtactttataaagtctaagAattcataagtgcttctccaa	5	7	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13494493	C	C	13494493	1	2	143	0	1	0	0	0	0	0	0	0	1408	261	9	5		5	BEND7	10	13494493	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	2131310	13494493	122040254	382	123623											
FAM107B	83641	broad.mit.edu	37	chr10	14563710	14563710	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggattcttgtccctgccttGaacatatttgaccccatttg	7	11	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14563710	A	A	14563710	1	1	143	0	1	0	0	0	0	0	0	0	5436	1305	45	4		4	FAM107B	10	14563710	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1069217	14563710	120971037	383	123624											
ITGA8	8516	broad.mit.edu	37	chr10	15714556	15714556	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggataagtcagggataaaActtgcatctacatttactat	7	7	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15714556	T	T	15714556	1	4	143	0	1	0	0	0	0	0	0	0	7952	58	2	5		5	ITGA8	10	15714556	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	1150846	15714556	119820191	384	123625											
STAM	8027	broad.mit.edu	37	chr10	17747606	17747606	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaacattcagaactctcaGaacttaatgtgaaagtgatg	8	6	2	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17747606	A	A	17747606	3	1	143	1	0	0	0	0	1	0	0	0	15366	943	33	4	1121	4	STAM	10	17747606	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2033050	17747606	117787141	385	123626											
NEBL	10529	broad.mit.edu	37	chr10	21319315	21319315	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accaggatgcaggaaggagaGagactgaaaagtctctagaa	13	6	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21319315	C	C	21319315	1	2	143	0	1	0	0	0	0	0	0	0	10398	957	33	4		4	NEBL	10	21319315	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	3571709	21319315	114215432	386	123627											
YME1L1	10730	broad.mit.edu	37	chr10	27412450	27412450	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttaacaaaatttagcacTgcatcaaagatacaccaaaa	3	11	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27412450	C	C	27412450	1	2	143	0	1	0	0	0	0	0	0	0	17614	1595	55	5		5	YME1L1	10	27412450	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	6093135	27412450	108122297	387	123628											
PTCHD3	374308	broad.mit.edu	37	chr10	27703039	27703039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatttcgggggtgccagGggtcccgggggtggctgctt	22	8	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27703039	T	T	27703039	2	4	143	1	0	0	0	0	0	0	0	1	12840	1219	43	2		2	PTCHD3	10	27703039	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	290589	27703039	107831708	388	123629											
ARMC4	55130	broad.mit.edu	37	chr10	28151619	28151619	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taggcattttttaagaggcaGaaagtaacaatacagctgtg	10	5	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28151619	A	A	28151619	1	1	143	0	1	0	0	0	0	0	0	0	957	957	33	4		4	ARMC4	10	28151619	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	448580	28151619	107383128	389	123630											
FZD8	8325	broad.mit.edu	37	chr10	35928960	35928960	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtagcagatgcccgccacCgggtcgccgtccaccgagct	12	17	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35928960	T	T	35928960	2	4	143	1	0	0	0	0	0	0	0	1	6196	639	23	4		4	FZD8	10	35928960	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	7777341	35928960	99605787	390	123631											
ANKRD30A	91074	broad.mit.edu	37	chr10	37438414	37438414	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atattttcttcagtgtattcCtgtcgtgtgtgtgtcctaaa	8	7	2	0	rs149293826	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37438414	T	T	37438414	1	4	143	0	1	0	0	0	0	0	0	0	658	696	24	4		4	ANKRD30A	10	37438414	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1509454	37438414	98096333	391	123632											
BMS1	9790	broad.mit.edu	37	chr10	43312827	43312827	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacgaagaagaaagtgccaAgaaaaagcatttggataaga	11	5	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43312827	T	T	43312827	3	4	143	1	0	0	0	0	1	0	0	0	1478	72	3	5	2519	5	BMS1	10	43312827	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	5874413	43312827	92221920	392	123633											
RET	5979	broad.mit.edu	37	chr10	43615230	43615230	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacccagccagccccggCcaggccacaccctgacccac	8	23	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43615230	G	G	43615230	1	3	143	0	1	0	0	0	0	0	0	0	13343	754	26	4		4	RET	10	43615230	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	302403	43615230	91919517	393	123634											
FAM21B	55747	broad.mit.edu	37	chr10	47919937	47919937	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaactttaatttcaatccAacaggatttgttttcttctc	4	9	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47919937	T	T	47919937	1	4	143	0	1	0	0	0	0	0	0	0	5588	145	5	5		5	FAM21B	10	47919937	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	4304707	47919937	87614810	394	123635											
PCDH15	65217	broad.mit.edu	37	chr10	55664898	55664898	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaataaatatatcttgtgtCatttttctctcaactccaca	2	10	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55664898	G	G	55664898	1	3	143	0	1	0	0	0	0	0	0	0	11605	841	29	4		4	PCDH15	10	55664898	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	7744961	55664898	79869849	395	123636											
HNRNPH3	3189	broad.mit.edu	37	chr10	70100900	70100900	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttactttaatattctcaataGaaaagtaaataagtgtttcc	4	5	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70100900	A	A	70100900	1	1	143	0	1	0	0	0	0	0	0	0	7335	957	33	4		4	HNRNPH3	10	70100900	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	14436002	70100900	65433847	396	123637											
SGPL1	8879	broad.mit.edu	37	chr10	72614367	72614367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttagtttagttacttgtgcGgtgcctagcattgagcagtt	12	6	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72614367	A	A	72614367	1	1	143	0	1	0	0	0	0	0	0	0	14331	1131	39	4		4	SGPL1	10	72614367	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2513467	72614367	62920380	397	123638											
MYST4	23522	broad.mit.edu	37	chr10	76789116	76789116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacccccaggagaacagGcacagaagcaggaccaaaag	11	13	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76789116	T	T	76789116	3	4	143	1	0	0	0	0	1	0	0	0	10199	1203	42	3	4596	3	MYST4	10	76789116	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4174749	76789116	58745631	398	123639											
ZNF503	84858	broad.mit.edu	37	chr10	77158903	77158903	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggccgacacccagttgcaGatgtgggggagtgggtcgtt	17	8	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77158903	A	A	77158903	2	1	143	1	0	0	0	0	0	0	0	1	18078	932	33	4		4	ZNF503	10	77158903	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	369787	77158903	58375844	399	123640											
KCNMA1	3778	broad.mit.edu	37	chr10	78846169	78846169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacctaggaggtgtgtccCctcagcacagagtcaggact	11	13	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78846169	A	A	78846169	1	1	143	0	1	0	0	0	0	0	0	0	8143	638	22	2		2	KCNMA1	10	78846169	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1687266	78846169	56688578	400	123641											
GHITM	27069	broad.mit.edu	37	chr10	85909790	85909790	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatttagtaaatacttaatGagcacttcctctttctccag	4	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85909790	C	C	85909790	1	2	143	0	1	0	0	0	0	0	0	0	6434	1305	45	4		4	GHITM	10	85909790	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	7063621	85909790	49624957	401	123642											
FAM190B	54462	broad.mit.edu	37	chr10	86151180	86151180	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggataaaatgctagaagttCgacagagttattttgccctg	10	6	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86151180	A	A	86151180	1	1	143	0	1	0	0	0	0	0	0	0	5569	899	31	3		3	FAM190B	10	86151180	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	241390	86151180	49383567	402	123643											
KIF20B	9585	broad.mit.edu	37	chr10	91469259	91469259	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttttgttttaaagataaaGagacttggcttaggctaaat	8	3	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91469259	C	C	91469259	1	2	143	0	1	0	0	0	0	0	0	0	8357	957	33	4		4	KIF20B	10	91469259	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5318079	91469259	44065488	403	123644											
ENTPD1	953	broad.mit.edu	37	chr10	97602241	97602241	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggagccacggcaggcatgCggttgctcaggtatagcagc	16	10	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97602241	T	T	97602241	3	4	143	1	0	0	0	0	1	0	0	0	5180	759	27	4	514	4	ENTPD1	10	97602241	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	6132982	97602241	37932506	404	123645											
ARHGAP19	84986	broad.mit.edu	37	chr10	99019290	99019290	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcaaattacgattaggagGagggagaatgaggaagagca	15	4	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99019290	A	A	99019290	3	1	143	1	0	0	0	0	1	0	0	0	871	1174	41	4	807	4	ARHGAP19	10	99019290	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1417049	99019290	36515457	405	123646											
HPSE2	60495	broad.mit.edu	37	chr10	100481409	100481410	+	Intron	DNP	CC	AA	AA													agaaaagctaaataatctgaCctacccatctaggagggcga							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	100481410	AA	AA	100481409	1	1	143	0	1	0	0	0	0	0	0	0	7412	522	18	3		3	HPSE2	10	100481409	Intron	DNP	CC	TCGA-49-4514-01A-21D-1855-08	1462119	100481409	35053338	406	123647											
PKD2L1	9033	broad.mit.edu	37	chr10	102051229	102051229	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctgcccagctgtggctgtGacctctcagttatggacttc	10	12	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102051229	T	T	102051229	1	4	143	0	1	0	0	0	0	0	0	0	12062	1305	45	3		3	PKD2L1	10	102051229	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1569820	102051229	33483518	407	123648											
PPRC1	23082	broad.mit.edu	37	chr10	103898375	103898375	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggttgtttttctggagcaGagcaggttatctctggagga	14	6	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103898375	C	C	103898375	5	2	143	1	0	0	0	0	0	0	1	0	12511	956	33	4	352	4	PPRC1	10	103898375	Splice_Site	SNP	G	TCGA-49-4514-01A-21D-1855-08	1847146	103898375	31636372	408	123649											
FAM160B1	57700	broad.mit.edu	37	chr10	116605137	116605137	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcttacagcttggactcatAtagtcataaagaagatgctt	8	7	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116605137	G	G	116605137	3	3	143	1	0	0	0	0	1	0	0	0	5516	449	16	5	1055	5	FAM160B1	10	116605137	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	12706762	116605137	18929610	409	123650											
PRDX3	10935	broad.mit.edu	37	chr10	120928109	120928109	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataatagtcccaaaagtgaGtggcaatctcccaattttta	6	8	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120928109	C	C	120928109	1	2	143	0	1	0	0	0	0	0	0	0	12572	1044	36	4		4	PRDX3	10	120928109	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	4322972	120928109	14606638	410	123651											
TACC2	10579	broad.mit.edu	37	chr10	123844906	123844906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcgagggtctcgcctcCagcagcagatgtcttaaaag	11	12	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123844906	A	A	123844906	3	1	143	1	0	0	0	0	1	0	0	0	15621	594	21	2	2901	2	TACC2	10	123844906	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2916797	123844906	11689841	411	123652											
C10orf90	118611	broad.mit.edu	37	chr10	128153147	128153147	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctctgctctcccagttggaGaaggggaggtttcatcaggt	13	9	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128153147	C	C	128153147	1	2	143	0	1	0	0	0	0	0	0	0	1634	957	33	4		4	C10orf90	10	128153147	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	4308241	128153147	7381600	412	123653											
LRRC27	80313	broad.mit.edu	37	chr10	134165306	134165306	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcccgcccagtgcacccgGaactgggactgggctgtgat	14	14	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165306	A	A	134165306	1	1	143	0	1	0	0	0	0	0	0	0	9068	1189	41	4		4	LRRC27	10	134165306	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6012159	134165306	1369441	413	123654											
CYP2E1	1571	broad.mit.edu	37	chr10	135371748	135371748	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgacacattttggcatcaGggactatgcactgcaccctc	9	12	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135371748	T	T	135371748	1	4	143	0	1	0	0	0	0	0	0	0	4203	1015	35	2		2	CYP2E1	10	135371748	3'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	1206442	135371748	162999	414	123655											
AP2A2	161	broad.mit.edu	37	chr11	981252	981252	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttagcacagaagaacccaGaagagtttaaaacctccgtg	8	10	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	981252	C	C	981252	3	2	143	1	0	0	0	0	1	0	0	0	742	943	33	4	680	4	AP2A2	11	981252	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08		981252	134025264	415	123656											
MUC2	4583	broad.mit.edu	37	chr11	1085772	1085772	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggccagaactcctcactggGctcattcagcatcatcaccg	8	16	5	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1085772	C	C	1085772	3	2	143	1	0	0	0	0	1	0	0	0	10069	1203	42	4	2775	4	MUC2	11	1085772	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	104520	1085772	133920744	416	123657											
MUC5B	727897	broad.mit.edu	37	chr11	1272929	1272929	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttccccagctcccacttctCtactccctgcttctgcaggg	6	19	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1272929	G	G	1272929	3	3	143	1	0	0	0	0	1	0	0	0	10073	913	32	4	14950	4	MUC5B	11	1272929	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	187157	1272929	133733587	417	123658											
INS-IGF2	723961	broad.mit.edu	37	chr11	2182027	2182027	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggctcaccctgcaggtcctCtgcctcccggcgggtcttgg	13	16	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2182027	T	T	2182027	3	4	143	1	0	0	0	0	1	0	0	0	7833	922	32	4	439	4	INS-IGF2	11	2182027	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	909098	2182027	132824489	418	123659											
OR52B4	143496	broad.mit.edu	37	chr11	4388697	4388697	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgcagacattagccaacgGgatgtggatacaaggtggaa	13	6	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4388697	C	C	4388697	3	2	143	1	0	0	0	0	1	0	0	0	11206	1232	43	4	119	4	OR52B4	11	4388697	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2206670	4388697	130617819	419	123660											
OR52R1	119695	broad.mit.edu	37	chr11	4825626	4825626	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatggactggttaatatgGtctctgctgggaacgcaatc	11	9	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4825626	T	T	4825626	3	4	143	1	0	0	0	0	1	0	0	0	11225	1276	44	3		3	OR52R1	11	4825626	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	436929	4825626	130180890	420	123661											
OR51L1	119682	broad.mit.edu	37	chr11	5020955	5020955	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacatgtgtatcccatatctGtgtggtgcttatcttctttg	8	9	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5020955	C	C	5020955	3	2	143	1	0	0	0	0	1	0	0	0	11196	1377	48	4	745	4	OR51L1	11	5020955	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	195329	5020955	129985561	421	123662											
OR51I1	390063	broad.mit.edu	37	chr11	5462512	5462512	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatcacagtgggaagtgtaGaaaaggacactcccagatca	10	8	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5462512	C	C	5462512	3	2	143	1	0	0	0	0	1	0	0	0	11194	942	33	4	715	4	OR51I1	11	5462512	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	441557	5462512	129544004	422	123663											
MICAL2	9645	broad.mit.edu	37	chr11	12264315	12264315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttggacacggggatttccCgcaggtaaacatggggcttt	14	8	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12264315	A	A	12264315	3	1	143	1	0	0	0	0	1	0	0	0	9663	652	23	1	2724	1	MICAL2	11	12264315	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	6801803	12264315	122742201	423	123664											
CALCA	796	broad.mit.edu	37	chr11	14990398	14990398	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgatggtctctctccaagtCgctggacatatcccttttct	8	13	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14990398	A	A	14990398	1	1	143	0	1	0	0	0	0	0	0	0	2601	884	31	3		3	CALCA	11	14990398	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2726083	14990398	120016118	424	123665											
USH1C	10083	broad.mit.edu	37	chr11	17531182	17531182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataagggaaggacagggggCgccgggaccttgtggggtgg	22	6	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17531182	A	A	17531182	1	1	143	0	1	0	0	0	0	0	0	0	17160	755	27	3		3	USH1C	11	17531182	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2540784	17531182	117475334	425	123666											
MRGPRX3	117195	broad.mit.edu	37	chr11	18159487	18159487	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccaggatccacctggattgGaaagtcttattttgtcatgt	9	8	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18159487	A	A	18159487	4	1	143	1	0	0	0	0	0	1	0	0	9862	1183	41	4	740	4	MRGPRX3	11	18159487	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	628305	18159487	116847029	426	123667											
SLC17A6	57084	broad.mit.edu	37	chr11	22399054	22399054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagagaaacaaccctgggCagacccggaggaaacaagtg	14	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22399054	A	A	22399054	3	1	143	1	0	0	0	0	1	0	0	0	14534	710	25	3	1563	3	SLC17A6	11	22399054	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4239567	22399054	112607462	427	123668											
WT1	7490	broad.mit.edu	37	chr11	32437901	32437901	+	Intron	DEL	C	-	-													tgaataagaagaggtgggggCgggggagagagattcttccc							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32437901	-	-	32437901	6	5	143	0	1	1	0	1	0	0	0	0	17535	783	27	0		0	WT1	11	32437901	Intron	DEL	C	TCGA-49-4514-01A-21D-1855-08	10038847	32437901	102568615	428	123669											
CAPRIN1	4076	broad.mit.edu	37	chr11	34101277	34101277	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaggaagaagaggcagcctCagcacctgcagttgaagacc	13	10	1	5			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34101277	T	T	34101277	3	4	143	1	0	0	0	0	1	0	0	0	2661	838	29	4	813	4	CAPRIN1	11	34101277	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1663376	34101277	100905239	429	123670											
NAT10	55226	broad.mit.edu	37	chr11	34167643	34167643	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctctagtgacaagaaaagGaagttagaggccaaacaaga	10	6	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34167643	A	A	34167643	2	1	143	1	0	0	0	0	0	0	0	1	10268	1165	41	4		4	NAT10	11	34167643	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	66366	34167643	100838873	430	123671											
PDHX	8050	broad.mit.edu	37	chr11	34969210	34969210	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatttcttgagtggaaagttCattgtagtaaaattaccttt	8	4	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34969210	T	T	34969210	1	4	143	0	1	0	0	0	0	0	0	0	11761	841	29	4		4	PDHX	11	34969210	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	801567	34969210	100037306	431	123672											
LRP4	4038	broad.mit.edu	37	chr11	46917795	46917795	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctttcgtcgctgttgtcAccacagtcgttgaccccgtt	11	13	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46917795	T	T	46917795	2	4	143	1	0	0	0	0	0	0	0	1	9046	146	6	5		5	LRP4	11	46917795	Silent	SNP	A	TCGA-49-4514-01A-21D-1855-08	11948585	46917795	88088721	432	123673											
TRIM48	79097	broad.mit.edu	37	chr11	55038289	55038289	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accaaccatgtagaattattCctggattgtgaagctagaac	8	8	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55038289	A	A	55038289	1	1	143	0	1	0	0	0	0	0	0	0	16648	870	30	3		3	TRIM48	11	55038289	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	8120494	55038289	79968227	433	123674											
OR4S2	219431	broad.mit.edu	37	chr11	55418616	55418616	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagtcacagctcccaagatGattgttgacctgttagcaaa	8	10	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55418616	C	C	55418616	3	2	143	1	0	0	0	0	1	0	0	0	11177	1290	45	4	239	4	OR4S2	11	55418616	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	380327	55418616	79587900	434	123675											
OR4C6	219432	broad.mit.edu	37	chr11	55433216	55433216	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcctgcacggacacccacAtcctgggcctcttagttacc	8	16	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55433216	G	G	55433216	3	3	143	1	0	0	0	0	1	0	0	0	11146	217	8	5	576	5	OR4C6	11	55433216	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	14600	55433216	79573300	435	123676											
OR5L2	26338	broad.mit.edu	37	chr11	55595424	55595424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctccacctgtgcctccCacctcacagccatcactgtc	4	20	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595424	A	A	55595424	3	1	143	1	0	0	0	0	1	0	0	0	11265	594	21	2	732	2	OR5L2	11	55595424	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	162208	55595424	79411092	436	123677											
OR5F1	338674	broad.mit.edu	37	chr11	55761175	55761176	+	Frame_Shift_Ins	INS	-	A	A													atcacagaaaggaagaggtcINScttttcctgctaattacatt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55761176	A	A	55761175	7	5	143	1	0	1	1	0	0	0	0	0	11252	854	30	0	20	0	OR5F1	11	55761175	Frame_Shift_Ins	INS	-	TCGA-49-4514-01A-21D-1855-08	165751	55761175	79245341	437	123678											
OR8J1	219477	broad.mit.edu	37	chr11	56127760	56127760	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccagagtcactgagtttaTtcttacaggtgtctctagct	8	10	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56127760	C	C	56127760	3	2	143	1	0	0	0	0	1	0	0	0	11335	1493	52	5	40	5	OR8J1	11	56127760	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	366585	56127760	78878756	438	123679											
OR5B17	219965	broad.mit.edu	37	chr11	58126125	58126126	+	Frame_Shift_Del	DEL	CA	-	-													acagcctatagccagacaagCacacacacgtgttgtcatgg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58126126	-	-	58126125	7	5	143	1	0	1	0	1	0	0	0	0	11243	710	25	0	528	0	OR5B17	11	58126125	Frame_Shift_Del	DEL	CA	TCGA-49-4514-01A-21D-1855-08	1998365	58126125	76880391	439	123680											
MS4A5	64232	broad.mit.edu	37	chr11	60215231	60215231	+	Nonstop_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgattgtgaacaatgttgttGactagcactgtgagaataaa	10	4	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60215231	T	T	60215231	4	4	143	1	0	0	0	0	0	0	0	0	9957	1285	45	3	620	3	MS4A5	11	60215231	Nonstop_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2089106	60215231	74791285	440	123681											
MS4A8B	83661	broad.mit.edu	37	chr11	60482498	60482498	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgctctgcctacagaaccCtggaatggcgatttctggcg	11	12	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60482498	T	T	60482498	3	4	143	1	0	0	0	0	1	0	0	0	9961	681	24	4	557	4	MS4A8B	11	60482498	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	267267	60482498	74524018	441	123682											
ZP1	22917	broad.mit.edu	37	chr11	60638403	60638403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggatggacaccaaacccCaaggccctcatctgcctttg	9	15	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60638403	A	A	60638403	1	1	143	0	1	0	0	0	0	0	0	0	18344	609	21	2		2	ZP1	11	60638403	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	155905	60638403	74368113	442	123683											
DDB1	1642	broad.mit.edu	37	chr11	61077645	61077645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcacagaattcccaccCctcctttctgctcctcctag	3	19	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61077645	A	A	61077645	1	1	143	0	1	0	0	0	0	0	0	0	4356	638	22	2		2	DDB1	11	61077645	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	439242	61077645	73928871	443	123684											
AHNAK	79026	broad.mit.edu	37	chr11	62299707	62299707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaatgtccacttttgggcCtttgagttctccttccagct	7	12	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62299707	A	A	62299707	3	1	143	1	0	0	0	0	1	0	0	0	414	681	24	2	15610	2	AHNAK	11	62299707	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1222062	62299707	72706809	444	123685											
SLC25A45	283130	broad.mit.edu	37	chr11	65149533	65149533	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactaatgtttaaccctggcGggaaggtgagaattggcctg	13	8	0	1	rs112246159	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65149533	C	C	65149533	1	2	143	0	1	0	0	0	0	0	0	0	14624	1131	39	4		4	SLC25A45	11	65149533	5'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	2849826	65149533	69856983	445	123686											
RELA	5970	broad.mit.edu	37	chr11	65423106	65423106	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttcatctccactgctcctCagctgaacagagctgaacct	6	15	4	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65423106	T	T	65423106	1	4	143	0	1	0	0	0	0	0	0	0	13324	841	29	4		4	RELA	11	65423106	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	273573	65423106	69583410	446	123687											
SNX32	254122	broad.mit.edu	37	chr11	65619186	65619186	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctcaaaggctttcctgGtgagctttgcagggaagatg	14	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65619186	C	C	65619186	1	2	143	0	1	0	0	0	0	0	0	0	15016	1276	44	4		4	SNX32	11	65619186	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	196080	65619186	69387330	447	123688											
EIF1AD	84285	broad.mit.edu	37	chr11	65766889	65766889	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatgccaagagatgagccaAagtcagaaaggacaaataaa	9	7	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65766889	T	T	65766889	1	4	143	0	1	0	0	0	0	0	0	0	5031	29	1	5		5	EIF1AD	11	65766889	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	147703	65766889	69239627	448	123689											
RPS6KB2	6199	broad.mit.edu	37	chr11	67200256	67200256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccatctccactcccaGggcatcatctaccgggacct	9	17	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67200256	T	T	67200256	3	4	143	1	0	0	0	0	1	0	0	0	13768	991	35	2	590	2	RPS6KB2	11	67200256	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1433367	67200256	67806260	449	123690											
NDUFV1	4723	broad.mit.edu	37	chr11	67379312	67379312	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggctgctgctagggggctGaggcccaggcttctgtctgg	19	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67379312	A	A	67379312	1	1	143	0	1	0	0	0	0	0	0	0	10394	1305	45	4		4	NDUFV1	11	67379312	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	179056	67379312	67627204	450	123691											
PDE2A	5138	broad.mit.edu	37	chr11	72289312	72289312	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaatgtgctccatgaagctGatttgcagctcagggatata	11	8	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72289312	T	T	72289312	2	4	143	1	0	0	0	0	0	0	0	1	11730	1280	45	3		3	PDE2A	11	72289312	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	4910000	72289312	62717204	451	123692											
SLCO2B1	11309	broad.mit.edu	37	chr11	74876893	74876893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagccgggtgcaccgaccccGaatgattggctatggggcta	14	12	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74876893	T	T	74876893	3	4	143	1	0	0	0	0	1	0	0	0	14841	1058	37	3	361	3	SLCO2B1	11	74876893	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2587581	74876893	60129623	452	123693											
SLCO2B1	11309	broad.mit.edu	37	chr11	74880441	74880441	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacaacagcaactcgccCctctacctcggtgaggacca	8	18	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74880441	T	T	74880441	2	4	143	1	0	0	0	0	0	0	0	1	14841	610	22	4		4	SLCO2B1	11	74880441	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	3548	74880441	60126075	453	123694											
C11orf30	56946	broad.mit.edu	37	chr11	76246861	76246861	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagataagcaaacagacAaaaaaattgtttgttttttt	6	3	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76246861	T	T	76246861	1	4	143	0	1	0	0	0	0	0	0	0	1648	145	5	5		5	C11orf30	11	76246861	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	1366420	76246861	58759655	454	123695											
PAK1	5058	broad.mit.edu	37	chr11	77060267	77060267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactaaaggagcaacagtGggtggtggatactcacctcc	12	9	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77060267	T	T	77060267	1	4	143	0	1	0	0	0	0	0	0	0	11493	1363	47	2		2	PAK1	11	77060267	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	813406	77060267	57946249	455	123696											
ALG8	79053	broad.mit.edu	37	chr11	77825490	77825490	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattcagggtaaatgaaatGcaataatgtggtattctaga	9	3	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77825490	A	A	77825490	1	1	143	0	1	0	0	0	0	0	0	0	523	1334	46	4		4	ALG8	11	77825490	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	765223	77825490	57181026	456	123697											
TYR	7299	broad.mit.edu	37	chr11	89018116	89018116	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgactatagctatctacaaGattcaggtaaagtttacttt	6	6	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89018116	A	A	89018116	3	1	143	1	0	0	0	0	1	0	0	0	16939	942	33	4	1374	4	TYR	11	89018116	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	11192626	89018116	45988400	457	123698											
NOX4	50507	broad.mit.edu	37	chr11	89224424	89224424	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacagccatgccgccggcCccgccgcgctgcgctctgtg	13	19	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89224424	A	A	89224424	1	1	143	0	1	0	0	0	0	0	0	0	10653	638	22	2		2	NOX4	11	89224424	5'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	206308	89224424	45782092	458	123699											
FOLH1B	219595	broad.mit.edu	37	chr11	89404908	89404908	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacatattaaaatcagaaaTaacatattttcacaaatctt	1	6	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89404908	A	A	89404908	1	1	143	0	1	0	0	0	0	0	0	0	6038	1421	49	5		5	FOLH1B	11	89404908	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	180484	89404908	45601608	459	123700											
UBTFL1	642623	broad.mit.edu	37	chr11	89819274	89819275	+	Missense_Mutation	DNP	GG	TT	TT													tagcttttaaaaacttttctGgtgaaatgtgcagactcaaa							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	89819275	TT	TT	89819274	3	4	143	1	0	0	0	0	1	0	0	0	17036	1348	47	2	159	2	UBTFL1	11	89819274	Missense_Mutation	DNP	GG	TCGA-49-4514-01A-21D-1855-08	414366	89819274	45187242	460	123701											
FAT3	120114	broad.mit.edu	37	chr11	92616312	92616312	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggtggggcccccgcaggtCcccgtgcgccccatggccta	15	17	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92616312	A	A	92616312	2	1	143	1	0	0	0	0	0	0	0	1	5748	842	30	3		3	FAT3	11	92616312	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	2797038	92616312	42390204	461	123702											
FAT3	120114	broad.mit.edu	37	chr11	92616507	92616507	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccgccgtgtcaccctgCcgctccgactgcgactccat	8	21	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92616507	A	A	92616507	4	1	143	1	0	0	0	0	0	1	0	0	5748	747	26	3	12975	3	FAT3	11	92616507	Nonsense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	195	92616507	42390009	462	123703											
SLC36A4	120103	broad.mit.edu	37	chr11	92917548	92917548	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatattaggttgctataaatGagactgagaactgcatctta	9	5	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92917548	C	C	92917548	1	2	143	0	1	0	0	0	0	0	0	0	14710	1305	45	4		4	SLC36A4	11	92917548	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	301041	92917548	42088968	463	123704											
MMP13	4322	broad.mit.edu	37	chr11	102825034	102825034	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacacaaaagcaagggttagGagtcttatcacatccaggag	10	9	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102825034	A	A	102825034	1	1	143	0	1	0	0	0	0	0	0	0	9745	1189	41	4		4	MMP13	11	102825034	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	9907486	102825034	32181482	464	123705											
SIK3	23387	broad.mit.edu	37	chr11	116747572	116747572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggttatggcctgattaCaatcacatgcaaaggaggct	10	8	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116747572	T	T	116747572	1	4	143	0	1	0	0	0	0	0	0	0	14432	493	17	4		4	SIK3	11	116747572	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	13922538	116747572	18258944	465	123706											
SORL1	6653	broad.mit.edu	37	chr11	121457173	121457173	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagttgatccctgagtacTtggctaggactcctggaggc	13	10	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121457173	C	C	121457173	1	2	143	0	1	0	0	0	0	0	0	0	15048	1624	56	5		5	SORL1	11	121457173	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	4709601	121457173	13549343	466	123707											
SCN3B	55800	broad.mit.edu	37	chr11	123513397	123513397	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatctgcagatagaggagcaGaagagggtagggccaggaaa	16	5	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123513397	A	A	123513397	1	1	143	0	1	0	0	0	0	0	0	0	14032	957	33	4		4	SCN3B	11	123513397	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2056224	123513397	11493119	467	123708											
ROBO4	54538	broad.mit.edu	37	chr11	124761263	124761263	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagaagagagtcccctgCggctgcagaggctgtctgag	18	9	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124761263	T	T	124761263	3	4	143	1	0	0	0	0	1	0	0	0	13627	768	27	4	1171	4	ROBO4	11	124761263	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1247866	124761263	10245253	468	123709											
WNK1	65125	broad.mit.edu	37	chr12	1005335	1005335	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacctcagagtcctcagtGctatcaagtagtagtccaga	9	11	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1005335	A	A	1005335	2	1	143	1	0	0	0	0	0	0	0	1	17504	1306	46	4		4	WNK1	12	1005335	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08		1005335	132846560	469	123710											
WNK1	65125	broad.mit.edu	37	chr12	1009850	1009850	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaaggtaataaagcaacCatcatcgtccaaaaacaata	6	9	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1009850	T	T	1009850	1	4	143	0	1	0	0	0	0	0	0	0	17504	609	21	4		4	WNK1	12	1009850	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	4515	1009850	132842045	470	123711											
ITFG2	55846	broad.mit.edu	37	chr12	2927444	2927444	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctgatcagcgacatcgGtgggcatgcctacctttgca	11	12	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2927444	A	A	2927444	5	1	143	1	0	0	0	0	0	0	1	0	7940	1275	44	4	421	4	ITFG2	12	2927444	Splice_Site	SNP	G	TCGA-49-4514-01A-21D-1855-08	1917594	2927444	130924451	471	123712											
PRMT8	56341	broad.mit.edu	37	chr12	3692200	3692200	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaggcgataagttcccggCattctctcttctctgggctg	12	11	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3692200	G	G	3692200	1	3	143	0	1	0	0	0	0	0	0	0	12648	725	25	4		4	PRMT8	12	3692200	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	764756	3692200	130159695	472	123713											
VWF	7450	broad.mit.edu	37	chr12	6232097	6232097	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctttatgcttcttaattCcccaacaggagatggcattt	6	11	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6232097	A	A	6232097	1	1	143	0	1	0	0	0	0	0	0	0	17373	870	30	3		3	VWF	12	6232097	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2539897	6232097	127619798	473	123714											
USP5	8078	broad.mit.edu	37	chr12	6964802	6964802	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtcattaaagcttggcacaGatgttttttagctttattcc	7	7	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6964802	A	A	6964802	1	1	143	0	1	0	0	0	0	0	0	0	17208	957	33	4		4	USP5	12	6964802	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	732705	6964802	126887093	474	123715											
LRRC23	10233	broad.mit.edu	37	chr12	6994300	6994300	+	Intron	SNP	T	C	C													tgcttcctgaaaaagattgtTgctatgctttgtatgatgca							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6994300	C	C	6994300	1	2	143	0	1	0	0	0	0	0	0	0	9065	1827	63	5		5	LRRC23	12	6994300	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	29498	6994300	126857595	475	123716	538	2									
LRRC23	10233	broad.mit.edu	37	chr12	6994304	6994304	+	Intron	SNP	A	G	G													tcctgaaaaagattgttgctAtgctttgtatgatgcaagct							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6994304	G	G	6994304	1	3	143	0	1	0	0	0	0	0	0	0	9065	464	16	5		5	LRRC23	12	6994304	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	4	6994304	126857591	476	123717	538	2									
C1S	716	broad.mit.edu	37	chr12	7178038	7178038	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatattctcattatttcatCatgactgaaagaagacacga	6	7	3	5			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7178038	T	T	7178038	1	4	143	0	1	0	0	0	0	0	0	0	1994	841	29	4		4	C1S	12	7178038	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	183734	7178038	126673857	477	123718											
KLRK1	22914	broad.mit.edu	37	chr12	10532187	10532187	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagcaaaaatgtgacaaagAtacatttaatatttctagtt	5	4	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10532187	G	G	10532187	1	3	143	0	1	0	0	0	0	0	0	0	8494	348	12	5		5	KLRK1	12	10532187	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	3354149	10532187	123319708	478	123719											
GRIN2B	2904	broad.mit.edu	37	chr12	13906652	13906652	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccagggacatgtccagtagGaggacctcctctagctccca	10	14	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13906652	A	A	13906652	2	1	143	1	0	0	0	0	0	0	0	1	6846	1161	41	4		4	GRIN2B	12	13906652	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	3374465	13906652	119945243	479	123720											
PDE3A	5139	broad.mit.edu	37	chr12	20705093	20705093	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaacagggcgctggctctCaactgctttgctcccatcaa	8	15	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20705093	T	T	20705093	1	4	143	0	1	0	0	0	0	0	0	0	11731	841	29	4		4	PDE3A	12	20705093	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	6798441	20705093	113146802	480	123721											
CASC1	55259	broad.mit.edu	37	chr12	25307169	25307169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtagtgttattacttgGcaaatgatatattaattttt	7	3	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25307169	T	T	25307169	1	4	143	0	1	0	0	0	0	0	0	0	2686	1218	42	3		3	CASC1	12	25307169	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	4602076	25307169	108544726	481	123722											
CCDC91	55297	broad.mit.edu	37	chr12	28459595	28459595	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaatttccaaatgtggtttCtagtgccctttggatgtttt	8	6	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28459595	T	T	28459595	1	4	143	0	1	0	0	0	0	0	0	0	2898	928	32	4		4	CCDC91	12	28459595	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3152426	28459595	105392300	482	123723											
CCDC91	55297	broad.mit.edu	37	chr12	28605357	28605357	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttaaccaagtctgttactcAagaaattattatgcagtctt	6	7	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28605357	T	T	28605357	1	4	143	0	1	0	0	0	0	0	0	0	2898	145	5	5		5	CCDC91	12	28605357	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	145762	28605357	105246538	483	123724											
SYT10	341359	broad.mit.edu	37	chr12	33592449	33592449	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcactccgtcctccttgtgGaaactcatcgtttggctttt	7	12	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33592449	A	A	33592449	2	1	143	1	0	0	0	0	0	0	0	1	15585	1165	41	4		4	SYT10	12	33592449	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	4987092	33592449	100259446	484	123725											
KIF21A	55605	broad.mit.edu	37	chr12	39763679	39763679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacaatgttaacatcaaatCctgttcccattgtgtatgtt	5	9	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39763679	A	A	39763679	3	1	143	1	0	0	0	0	1	0	0	0	8358	855	30	3	4866	3	KIF21A	12	39763679	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	6171230	39763679	94088216	485	123726											
ADAMTS20	80070	broad.mit.edu	37	chr12	43945745	43945745	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggttccaccctggggaccccGatcggggaggcccaccagag	15	15	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43945745	A	A	43945745	1	1	143	0	1	0	0	0	0	0	0	0	266	1073	37	4		4	ADAMTS20	12	43945745	5'Flank	SNP	G	TCGA-49-4514-01A-21D-1855-08	4182066	43945745	89906150	486	123727											
TWF1	5756	broad.mit.edu	37	chr12	44194195	44194195	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctaggagttcctctttaatCattttaattgcaacatatag	5	8	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44194195	T	T	44194195	1	4	143	0	1	0	0	0	0	0	0	0	16907	841	29	4		4	TWF1	12	44194195	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	248450	44194195	89657700	487	123728											
COL2A1	1280	broad.mit.edu	37	chr12	48370306	48370306	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcacttactctagggccAgaaggaccagcaggaccaga	11	11	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48370306	T	T	48370306	2	4	143	1	0	0	0	0	0	0	0	1	3719	175	7	5		5	COL2A1	12	48370306	Silent	SNP	A	TCGA-49-4514-01A-21D-1855-08	4176111	48370306	85481589	488	123729											
MCRS1	10445	broad.mit.edu	37	chr12	49959219	49959219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttggtcctctcaccagcCtgctctgcagggctcttggc	11	15	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49959219	A	A	49959219	1	1	143	0	1	0	0	0	0	0	0	0	9492	696	24	2		2	MCRS1	12	49959219	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1588913	49959219	83892676	489	123730											
GPD1	2819	broad.mit.edu	37	chr12	50498490	50498490	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatcatcaacacgcagcatGagaatgtcaaatacctgcca	7	11	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50498490	A	A	50498490	3	1	143	1	0	0	0	0	1	0	0	0	6669	1291	45	4	181	4	GPD1	12	50498490	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	539271	50498490	83353405	490	123731											
BIN2	51411	broad.mit.edu	37	chr12	51685316	51685316	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcctggacgcctgagtgaGaccctagcttaaataaataa	9	10	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51685316	C	C	51685316	1	2	143	0	1	0	0	0	0	0	0	0	1439	957	33	4		4	BIN2	12	51685316	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1186826	51685316	82166579	491	123732											
KRT78	196374	broad.mit.edu	37	chr12	53242431	53242432	+	Missense_Mutation	DNP	GG	TT	TT													gatcgatctcaatcttcagtGgggtcagcagattctggttg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	53242432	TT	TT	53242431	3	4	143	1	0	0	0	0	1	0	0	0	8562	1348	47	2	1314	2	KRT78	12	53242431	Missense_Mutation	DNP	GG	TCGA-49-4514-01A-21D-1855-08	1557115	53242431	80609464	492	123733											
CALCOCO1	57658	broad.mit.edu	37	chr12	54115361	54115361	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttgccggctcaggatgtcCctctcttctgtgatctcccc	9	15	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54115361	G	G	54115361	3	3	143	1	0	0	0	0	1	0	0	0	2603	622	22	4	1467	4	CALCOCO1	12	54115361	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	872930	54115361	79736534	493	123734											
SMARCC2	6601	broad.mit.edu	37	chr12	56567459	56567459	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcttcccaacccgccccatCcccatagcacctcaccctac	2	23	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56567459	T	T	56567459	1	4	143	0	1	0	0	0	0	0	0	0	14890	870	30	4		4	SMARCC2	12	56567459	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2452098	56567459	77284436	494	123735											
SMARCC2	6601	broad.mit.edu	37	chr12	56567617	56567617	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttaataagaccccactgttCtaggaaggcatggaccctgt	10	10	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56567617	T	T	56567617	3	4	143	1	0	0	0	0	1	0	0	0	14890	922	32	4	2276	4	SMARCC2	12	56567617	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	158	56567617	77284278	495	123736											
SMARCC2	6601	broad.mit.edu	37	chr12	56568419	56568419	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcatgtacccccttcccctCagccacaagacccacctcat	3	21	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56568419	G	G	56568419	1	3	143	0	1	0	0	0	0	0	0	0	14890	841	29	4		4	SMARCC2	12	56568419	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	802	56568419	77283476	496	123737											
KIF5A	3798	broad.mit.edu	37	chr12	57963493	57963493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggataggtgggagtgagGggcagtgggaagaggaggag	25	1	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57963493	T	T	57963493	1	4	143	0	1	0	0	0	0	0	0	0	8375	1247	43	2		2	KIF5A	12	57963493	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1395074	57963493	75888402	497	123738											
KIF5A	3798	broad.mit.edu	37	chr12	57963761	57963761	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctctcacctcgtcttgccCctttgcaggagagaatgtgc	9	13	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57963761	T	T	57963761	1	4	143	0	1	0	0	0	0	0	0	0	8375	638	22	4		4	KIF5A	12	57963761	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	268	57963761	75888134	498	123739											
CNOT2	4848	broad.mit.edu	37	chr12	70732251	70732251	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacatctggcaagacaacttCaagtacagatggacccaaat	7	10	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70732251	T	T	70732251	3	4	143	1	0	0	0	0	1	0	0	0	3651	838	29	4	963	4	CNOT2	12	70732251	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	12768490	70732251	63119644	499	123740											
PTPRR	5801	broad.mit.edu	37	chr12	71286464	71286464	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacatactacttaccaccaCaattacatttgctgctggga	5	11	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71286464	T	T	71286464	3	4	143	1	0	0	0	0	1	0	0	0	12918	478	17	4	1673	4	PTPRR	12	71286464	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	554213	71286464	62565431	500	123741											
NAV3	89795	broad.mit.edu	37	chr12	78513530	78513530	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagagaaccaactaaaattgGgtcagggcgctcgagtcctg	13	9	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78513530	C	C	78513530	3	2	143	1	0	0	0	0	1	0	0	0	10279	1232	43	4	3612	4	NAV3	12	78513530	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	7227066	78513530	55338365	501	123742											
SYT1	6857	broad.mit.edu	37	chr12	79702650	79702650	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaacagtaaacgatatttgGaaactgtaagcctggaatta	8	6	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79702650	T	T	79702650	1	4	143	0	1	0	0	0	0	0	0	0	15584	1189	41	3		3	SYT1	12	79702650	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1189120	79702650	54149245	502	123743											
MYF6	4618	broad.mit.edu	37	chr12	81102525	81102525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcgcgccgggaccagGcctttcctcgctgccaaagc	11	16	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81102525	T	T	81102525	1	4	143	0	1	0	0	0	0	0	0	0	10122	1218	42	3		3	MYF6	12	81102525	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1399875	81102525	52749370	503	123744											
MYF6	4618	broad.mit.edu	37	chr12	81102736	81102736	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggaagtggtggagaaGtaactgagcctgcgcttgag	18	5	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81102736	C	C	81102736	3	2	143	1	0	0	0	0	1	0	0	0	10122	1020	36	4	736	4	MYF6	12	81102736	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	211	81102736	52749159	504	123745											
LRRIQ1	84125	broad.mit.edu	37	chr12	85623501	85623501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaacctaggttaattgtGctaaaacaaacatgacttta	6	6	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85623501	T	T	85623501	1	4	143	0	1	0	0	0	0	0	0	0	9116	1334	46	3		3	LRRIQ1	12	85623501	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	4520765	85623501	48228394	505	123746											
ATP2B1	490	broad.mit.edu	37	chr12	89992625	89992626	+	Intron	INS	-	A	A													aaaagaaaaaggcactttttINSacacagcatataggcaagaa							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89992626	A	A	89992625	6	5	143	0	1	1	1	0	0	0	0	0	1143	1769	61	0		0	ATP2B1	12	89992625	Intron	INS	-	TCGA-49-4514-01A-21D-1855-08	4369124	89992625	43859270	506	123747											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100453138	100453138	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttggggaagctggtataTgttttactaaaaaaatcaca	9	4	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100453138	A	A	100453138	2	1	143	1	0	0	0	0	0	0	0	1	17095	1451	51	5		5	UHRF1BP1L	12	100453138	Silent	SNP	T	TCGA-49-4514-01A-21D-1855-08	10460513	100453138	33398757	507	123748											
SYCP3	50511	broad.mit.edu	37	chr12	102122937	102122937	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccatttcttttttaaattCattttgtgcaccagtaagta	5	7	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102122937	T	T	102122937	3	4	143	1	0	0	0	0	1	0	0	0	15553	835	29	4	111	4	SYCP3	12	102122937	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1669799	102122937	31728958	508	123749											
CHPT1	56994	broad.mit.edu	37	chr12	102123092	102123092	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtagtaatttttgaatattCaaatgctcatctatttgaaa	5	4	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102123092	T	T	102123092	1	4	143	0	1	0	0	0	0	0	0	0	3401	841	29	4		4	CHPT1	12	102123092	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	155	102123092	31728803	509	123750											
ANAPC7	51434	broad.mit.edu	37	chr12	110825741	110825741	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaaagtaaggcacgatatCtctcttccacatgcaaggag	9	9	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110825741	T	T	110825741	1	4	143	0	1	0	0	0	0	0	0	0	606	928	32	4		4	ANAPC7	12	110825741	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	8702649	110825741	23026154	510	123751											
OAS1	4938	broad.mit.edu	37	chr12	113344789	113344789	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaagctcagtcagcagaaGagataaaagcaaacaggtct	9	9	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113344789	C	C	113344789	1	2	143	0	1	0	0	0	0	0	0	0	10894	957	33	4		4	OAS1	12	113344789	5'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	2519048	113344789	20507106	511	123752											
CIT	11113	broad.mit.edu	37	chr12	120288115	120288115	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgcttagacaattataaaGaactgtgagaggaaaaagaa	9	4	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120288115	C	C	120288115	1	2	143	0	1	0	0	0	0	0	0	0	3469	957	33	4		4	CIT	12	120288115	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6943326	120288115	13563780	512	123753											
GCN1L1	10985	broad.mit.edu	37	chr12	120587749	120587749	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acgcacatactggtttccatCcccaaagcacaggagcagat	8	13	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120587749	T	T	120587749	3	4	143	1	0	0	0	0	1	0	0	0	6361	855	30	4	3703	4	GCN1L1	12	120587749	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	299634	120587749	13264146	513	123754											
RPLP0	6175	broad.mit.edu	37	chr12	120635308	120635308	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttacgtgagattccctacagGaaaggaagtccaagtaaggg	12	7	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120635308	A	A	120635308	1	1	143	0	1	0	0	0	0	0	0	0	13715	1189	41	4		4	RPLP0	12	120635308	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	47559	120635308	13216587	514	123755											
SETD8	387893	broad.mit.edu	37	chr12	123892056	123892056	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagcgtggatgcaactagaGagacaaatcgcctaggaaga	12	9	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123892056	C	C	123892056	3	2	143	1	0	0	0	0	1	0	0	0	14250	943	33	4	895	4	SETD8	12	123892056	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3256748	123892056	9959839	515	123756											
TMEM132D	121256	broad.mit.edu	37	chr12	129558563	129558563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactcgtcgtctgaggagaCggcggtgaaggtggtaaatt	16	6	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129558563	T	T	129558563	3	4	143	1	0	0	0	0	1	0	0	0	16170	536	19	4	146	4	TMEM132D	12	129558563	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5666507	129558563	4293332	516	123757											
STX2	2054	broad.mit.edu	37	chr12	131306161	131306161	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcccgtgaggccagagttGaggcctgtgccgcagacagc	14	13	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131306161	C	C	131306161	1	2	143	0	1	0	0	0	0	0	0	0	15463	1305	45	4		4	STX2	12	131306161	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1747598	131306161	2545734	517	123758											
SFRS8	6433	broad.mit.edu	37	chr12	132262626	132262626	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaatccagcactacgcCctgccctctactgactggag	9	14	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132262626	T	T	132262626	3	4	143	1	0	0	0	0	1	0	0	0	14296	623	22	4	2213	4	SFRS8	12	132262626	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	956465	132262626	1589269	518	123759											
ULK1	8408	broad.mit.edu	37	chr12	132404472	132404472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagatcatggccactccaGccctgccccgtgtctgctgc	11	17	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132404472	T	T	132404472	1	4	143	0	1	0	0	0	0	0	0	0	17101	986	34	3		3	ULK1	12	132404472	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	141846	132404472	1447423	519	123760											
GALNT9	50614	broad.mit.edu	37	chr12	132688113	132688113	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatccatccacacctcggcGgcgcgcagggcgttgcgctt	12	16	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132688113	T	T	132688113	2	4	143	1	0	0	0	0	0	0	0	1	6282	1103	39	1		1	GALNT9	12	132688113	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	283641	132688113	1163782	520	123761											
SACS	26278	broad.mit.edu	37	chr13	23904722	23904722	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgggaggaacaaagaaCctttgagagtaagtctgtcc	12	6	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23904722	T	T	23904722	2	4	143	1	0	0	0	0	0	0	0	1	13915	506	18	4		4	SACS	13	23904722	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08		23904722	91265156	521	123762											
SLC7A1	6541	broad.mit.edu	37	chr13	30106979	30106979	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtcaagatgagaattaTgatcactgcgaatatgtcgg	10	7	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30106979	C	C	30106979	3	2	143	1	0	0	0	0	1	0	0	0	14806	1464	51	5	1418	5	SLC7A1	13	30106979	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	6202257	30106979	85062899	522	123763											
PDS5B	23047	broad.mit.edu	37	chr13	33268412	33268412	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctccgacatcaagtaaagGatttgcttgacttgattaag	9	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33268412	A	A	33268412	3	1	143	1	0	0	0	0	1	0	0	0	11786	1174	41	4	1572	4	PDS5B	13	33268412	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3161433	33268412	81901466	523	123764											
FREM2	341640	broad.mit.edu	37	chr13	39262739	39262739	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtagtggatctagaaggaGcagcttcagacccttttgcc	12	9	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39262739	C	C	39262739	3	2	143	1	0	0	0	0	1	0	0	0	6105	971	34	4	1260	4	FREM2	13	39262739	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	5994327	39262739	75907139	524	123765											
KBTBD6	89890	broad.mit.edu	37	chr13	41704889	41704889	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctcccctaatatcatattCatacacagtcacccggttct	4	14	5	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41704889	T	T	41704889	3	4	143	1	0	0	0	0	1	0	0	0	8067	835	29	4	269	4	KBTBD6	13	41704889	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2442150	41704889	73464989	525	123766											
TSC22D1	8848	broad.mit.edu	37	chr13	45149890	45149890	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttatctggaagccacttttCtttttcatttgagttccgcc	7	10	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45149890	G	G	45149890	3	3	143	1	0	0	0	0	1	0	0	0	16732	912	32	4	3041	4	TSC22D1	13	45149890	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3445001	45149890	70019988	526	123767											
SPERT	220082	broad.mit.edu	37	chr13	46276900	46276900	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaatcttcttcttttctcGtttccacagcactcaaggcc	5	13	5	0	rs78790580	byFrequency;by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46276900	C	C	46276900	1	2	143	0	1	0	0	0	0	0	0	0	15157	1160	40	4		4	SPERT	13	46276900	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1127010	46276900	68892978	527	123768											
ZC3H13	23091	broad.mit.edu	37	chr13	46585482	46585482	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttaagatgtagcaagaagCtgagttatctgatcaataca	8	5	2	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46585482	T	T	46585482	1	4	143	0	1	0	0	0	0	0	0	0	17691	812	28	4		4	ZC3H13	13	46585482	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	308582	46585482	68584396	528	123769											
NEK5	341676	broad.mit.edu	37	chr13	52639651	52639651	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcaggtggaggtgatGtcggccactgccatcatctg	17	9	2	1	rs56086016		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52639651	A	A	52639651	2	1	143	1	0	0	0	0	0	0	0	1	10422	1368	48	4		4	NEK5	13	52639651	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	6054169	52639651	62530227	529	123770											
OLFM4	10562	broad.mit.edu	37	chr13	53624888	53624888	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaattatgatctttctgtCttgcagaagccccagtaagc	8	10	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53624888	A	A	53624888	2	1	143	1	0	0	0	0	0	0	0	1	10950	900	32	3		3	OLFM4	13	53624888	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	985237	53624888	61544990	530	123771											
NALCN	259232	broad.mit.edu	37	chr13	101753132	101753132	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagacagaaagatacatctTacccttctaataatgttggg	7	7	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101753132	C	C	101753132	1	2	143	0	1	0	0	0	0	0	0	0	10242	1769	61	5		5	NALCN	13	101753132	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	48128244	101753132	13416746	531	123772											
C13orf28	122258	broad.mit.edu	37	chr13	113086925	113086925	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctccgagcagctccagggaGagcaggtgagcccagccccc	13	16	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113086925	C	C	113086925	1	2	143	0	1	0	0	0	0	0	0	0	1737	957	33	4		4	C13orf28	13	113086925	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	11333793	113086925	2082953	532	123773											
ATP11A	23250	broad.mit.edu	37	chr13	113459422	113459422	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaataagtgacattttattCtcaggtaactgccacacggc	7	9	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113459422	G	G	113459422	1	3	143	0	1	0	0	0	0	0	0	0	1123	928	32	4		4	ATP11A	13	113459422	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	372497	113459422	1710456	533	123774											
GAS6	2621	broad.mit.edu	37	chr13	114535424	114535424	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcaaagaggaggatgccctCggggtcaaaggtccggaagt	17	8	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114535424	T	T	114535424	3	4	143	1	0	0	0	0	1	0	0	0	6311	893	31	4	1069	4	GAS6	13	114535424	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1076002	114535424	634454	534	123775											
CMTM5	116173	broad.mit.edu	37	chr14	23846633	23846633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatctccctgacccccgGctcctggccagccttatgcc	7	21	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23846633	T	T	23846633	1	4	143	0	1	0	0	0	0	0	0	0	3618	1218	42	3		3	CMTM5	14	23846633	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08		23846633	83502907	535	123776											
MYH6	4624	broad.mit.edu	37	chr14	23853733	23853733	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcttctgctcggcctccAgctcaccctccagctcccgc	8	21	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23853733	T	T	23853733	3	4	143	1	0	0	0	0	1	0	0	0	10132	188	7	5	352	5	MYH6	14	23853733	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	7100	23853733	83495807	536	123777											
GMPR2	51292	broad.mit.edu	37	chr14	24707945	24707945	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaactaccttcatccgagtCacccagcaggtgaatccaat	7	13	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24707945	T	T	24707945	2	4	143	1	0	0	0	0	0	0	0	1	6561	813	29	4		4	GMPR2	14	24707945	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	854212	24707945	82641595	537	123778											
HEATR5A	25938	broad.mit.edu	37	chr14	31792927	31792927	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgggatttttcatcacGtctggtggtcaggactgagg	15	6	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31792927	A	A	31792927	3	1	143	1	0	0	0	0	1	0	0	0	7098	1145	40	4	2561	4	HEATR5A	14	31792927	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	7084982	31792927	75556613	538	123779											
RALGAPA1	253959	broad.mit.edu	37	chr14	36143822	36143822	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcccaaaatgcctagcattCttcgccacattacagtagca	5	14	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36143822	G	G	36143822	3	3	143	1	0	0	0	0	1	0	0	0	13121	913	32	4	3139	4	RALGAPA1	14	36143822	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4350895	36143822	71205718	539	123780											
SEC23A	10484	broad.mit.edu	37	chr14	39536549	39536549	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acttgacacagttactgagtCcgtgtgttaaaatcgtagaa	9	7	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39536549	A	A	39536549	1	1	143	0	1	0	0	0	0	0	0	0	14104	870	30	3		3	SEC23A	14	39536549	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3392727	39536549	67812991	540	123781											
CTAGE5	4253	broad.mit.edu	37	chr14	39796255	39796255	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agacaatagttattatttctCtttgaaaggcagctgggatg	10	5	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39796255	G	G	39796255	1	3	143	0	1	0	0	0	0	0	0	0	4028	928	32	4		4	CTAGE5	14	39796255	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	259706	39796255	67553285	541	123782											
GNG2	54331	broad.mit.edu	37	chr14	52433384	52433384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccgtttagggagaagaaGtttttctgtgccatccttta	9	8	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52433384	T	T	52433384	3	4	143	1	0	0	0	0	1	0	0	0	6591	1020	36	3	201	3	GNG2	14	52433384	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	12637129	52433384	54916156	542	123783											
SAMD4A	23034	broad.mit.edu	37	chr14	55169444	55169445	+	Intron	DNP	GG	TT	TT													ggctgtgggaaaggtcctttGgaccccatatttgttgctct							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55169445	TT	TT	55169444	1	4	143	0	1	0	0	0	0	0	0	0	13932	1363	47	2		2	SAMD4A	14	55169444	Intron	DNP	GG	TCGA-49-4514-01A-21D-1855-08	2736060	55169444	52180096	543	123784											
C14orf37	145407	broad.mit.edu	37	chr14	58605023	58605024	+	Missense_Mutation	DNP	CC	AA	AA													aggctggcctccttccatacCctcatggcttacttgtgctg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	58605024	AA	AA	58605023	3	1	143	1	0	0	0	0	1	0	0	0	1784	623	22	2	1298	2	C14orf37	14	58605023	Missense_Mutation	DNP	CC	TCGA-49-4514-01A-21D-1855-08	3435579	58605023	48744517	544	123785											
RTN1	6252	broad.mit.edu	37	chr14	60193817	60193817	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcggggccaggctggggctCagttgaggggtagtcgagga	20	8	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60193817	T	T	60193817	3	4	143	1	0	0	0	0	1	0	0	0	13836	835	29	4	838	4	RTN1	14	60193817	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1588794	60193817	47155723	545	123786											
SYNE2	23224	broad.mit.edu	37	chr14	64676053	64676053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggtaacagggtctcccCcactaaaccgtgcgggtgtc	13	12	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64676053	A	A	64676053	1	1	143	0	1	0	0	0	0	0	0	0	15565	638	22	2		2	SYNE2	14	64676053	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	4482236	64676053	42673487	546	123787											
MAP3K9	4293	broad.mit.edu	37	chr14	71201084	71201084	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggagacagccaagactctCaagaggagctatgcttaccc	11	11	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71201084	A	A	71201084	1	1	143	0	1	0	0	0	0	0	0	0	9349	841	29	3		3	MAP3K9	14	71201084	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	6525031	71201084	36148456	547	123788											
KIAA1409	57578	broad.mit.edu	37	chr14	94101017	94101017	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttcttctcattctacctctCggattagtgaatgctacttt	5	10	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94101017	G	G	94101017	1	3	143	0	1	0	0	0	0	0	0	0	8300	899	31	4		4	KIAA1409	14	94101017	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	22899933	94101017	13248523	548	123789											
DIO3	1735	broad.mit.edu	37	chr14	102028757	102028757	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagggtgtaaacatccaaCggacaattgactgaacttgg	12	8	0	2	rs140242267	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102028757	A	A	102028757	1	1	143	0	1	0	0	0	0	0	0	0	4566	551	19	3		3	DIO3	14	102028757	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	7927740	102028757	5320783	549	123790											
PPP1R13B	23368	broad.mit.edu	37	chr14	104251283	104251283	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accacatcttttttactccaGaattaaaatgactccaacca	2	12	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104251283	A	A	104251283	1	1	143	0	1	0	0	0	0	0	0	0	12458	957	33	4		4	PPP1R13B	14	104251283	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2222526	104251283	3098257	550	123791											
TUBGCP5	114791	broad.mit.edu	37	chr15	22866791	22866791	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttagatggtctgaccctCagctacaaggtatatgctga	9	9	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22866791	A	A	22866791	2	1	143	1	0	0	0	0	0	0	0	1	16895	813	29	3		3	TUBGCP5	15	22866791	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08		22866791	79664601	551	123792											
CYFIP1	23191	broad.mit.edu	37	chr15	22933913	22933913	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctagcccgtggcactgccgAgggacagccttactcttgtc	12	14	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22933913	T	T	22933913	1	4	143	0	1	0	0	0	0	0	0	0	4170	319	11	5		5	CYFIP1	15	22933913	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	67122	22933913	79597479	552	123793											
ATP10A	57194	broad.mit.edu	37	chr15	25963457	25963457	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggacactctggtggctgcCgatgctgccgcgctgggaca	15	14	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25963457	T	T	25963457	3	4	143	1	0	0	0	0	1	0	0	0	1120	652	23	4	3102	4	ATP10A	15	25963457	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3029544	25963457	76567935	553	123794											
OTUD7A	161725	broad.mit.edu	37	chr15	31819497	31819497	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taacaccaggtcccggtcgtGaaacccccacattcctggag	9	15	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31819497	C	C	31819497	3	2	143	1	0	0	0	0	1	0	0	0	11412	1290	45	4	2141	4	OTUD7A	15	31819497	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	5856040	31819497	70711895	554	123795											
OTUD7A	161725	broad.mit.edu	37	chr15	31851205	31851205	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agccaccattgttgcctgctCgatcaagtcccgctcgatga	9	14	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31851205	T	T	31851205	3	4	143	1	0	0	0	0	1	0	0	0	11412	893	31	4	2299	4	OTUD7A	15	31851205	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	31708	31851205	70680187	555	123796											
TUBGCP4	27229	broad.mit.edu	37	chr15	43669153	43669153	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctcttctcattttcataGatcaaatagatttgagatat	4	6	4	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43669153	T	T	43669153	1	4	143	0	1	0	0	0	0	0	0	0	16894	957	33	3		3	TUBGCP4	15	43669153	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	11817948	43669153	58862239	556	123797											
CCNB2	9133	broad.mit.edu	37	chr15	59399928	59399928	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcctgtttttagccagactAcaagggtgcctttatcattg	9	9	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59399928	T	T	59399928	1	4	143	0	1	0	0	0	0	0	0	0	2943	406	14	5		5	CCNB2	15	59399928	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	15730775	59399928	43131464	557	123798											
ANXA2	302	broad.mit.edu	37	chr15	60656670	60656670	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgaaggcaatatcctgtctCtgtgcattgctgcggttggt	13	9	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60656670	A	A	60656670	3	1	143	1	0	0	0	0	1	0	0	0	718	912	32	3	858	3	ANXA2	15	60656670	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1256742	60656670	41874722	558	123799											
VPS13C	54832	broad.mit.edu	37	chr15	62214246	62214246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcacctggaaagatacaCacaaaattataagacagtcc	7	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62214246	A	A	62214246	1	1	143	0	1	0	0	0	0	0	0	0	17318	493	17	3		3	VPS13C	15	62214246	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1557576	62214246	40317146	559	123800											
HERC1	8925	broad.mit.edu	37	chr15	63921153	63921153	+	Intron	DEL	T	-	-													agcatcaataaaacacattcTttttttttttttttgagatg					rs67330370		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63921153	-	-	63921153	6	5	143	0	1	1	0	1	0	0	0	0	7124	1624	56	0		0	HERC1	15	63921153	Intron	DEL	T	TCGA-49-4514-01A-21D-1855-08	1706907	63921153	38610239	560	123801											
PML	5371	broad.mit.edu	37	chr15	74315494	74315494	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcggtaccagcgcgactacGaggagatggccagtcggctg	16	12	0	1	rs146344435		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74315494	A	A	74315494	3	1	143	1	0	0	0	0	1	0	0	0	12230	1059	37	4	938	4	PML	15	74315494	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	10394341	74315494	28215898	561	123802											
SH3GL3	6457	broad.mit.edu	37	chr15	84255823	84255823	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattctgcaggagctgcagaGcaagctacagatgcggtaag	14	8	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84255823	A	A	84255823	3	1	143	1	0	0	0	0	1	0	0	0	14365	971	34	4	739	4	SH3GL3	15	84255823	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	9940329	84255823	18275569	562	123803											
NTRK3	4916	broad.mit.edu	37	chr15	88483966	88483966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcagcacgatgtctctcCtcttaatgtgctgcacatct	7	13	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88483966	A	A	88483966	3	1	143	1	0	0	0	0	1	0	0	0	10803	681	24	2	939	2	NTRK3	15	88483966	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4228143	88483966	14047426	563	123804											
IQGAP1	8826	broad.mit.edu	37	chr15	91016085	91016085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagagttctatctctgGggtgactgccgcatataacc	9	10	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91016085	T	T	91016085	3	4	143	1	0	0	0	0	1	0	0	0	7884	1232	43	2	2266	2	IQGAP1	15	91016085	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2532119	91016085	11515307	564	123805											
RCCD1	91433	broad.mit.edu	37	chr15	91505103	91505103	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatttgcccctccccatcaCagtcctgcccttcaccctca	3	20	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91505103	T	T	91505103	1	4	143	0	1	0	0	0	0	0	0	0	13283	493	17	4		4	RCCD1	15	91505103	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	489018	91505103	11026289	565	123806											
SLCO3A1	28232	broad.mit.edu	37	chr15	92706072	92706072	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtggggagcaaggcgccTgcgtcctctacgacaatgtg	14	11	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92706072	C	C	92706072	3	2	143	1	0	0	0	0	1	0	0	0	14842	1580	55	5	1878	5	SLCO3A1	15	92706072	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	1200969	92706072	9825320	566	123807											
NR2F2	7026	broad.mit.edu	37	chr15	96877535	96877535	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatgctcttcagcgccgtcGagtgggcccggaacatcccc	13	15	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96877535	T	T	96877535	4	4	143	1	0	0	0	0	0	1	0	0	10723	1059	37	3	726	3	NR2F2	15	96877535	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4171463	96877535	5653857	567	123808											
ADAMTS17	170691	broad.mit.edu	37	chr15	100636863	100636863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatgcacagaatccaacCtagattatatttgtctttat	5	7	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100636863	A	A	100636863	1	1	143	0	1	0	0	0	0	0	0	0	262	696	24	2		2	ADAMTS17	15	100636863	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3759328	100636863	1894529	568	123809											
TRAF7	84231	broad.mit.edu	37	chr16	2226669	2226669	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtctcggggtttctgcctGccccgtgggcataggtggac	16	11	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2226669	T	T	2226669	1	4	143	0	1	0	0	0	0	0	0	0	16570	1334	46	3		3	TRAF7	16	2226669	3'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08		2226669	88128084	569	123810											
SRRM2	23524	broad.mit.edu	37	chr16	2815417	2815417	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacctaaagctccagcccctCgggcccttcccagacgaagc	8	18	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2815417	T	T	2815417	3	4	143	1	0	0	0	0	1	0	0	0	15287	875	31	4	4926	4	SRRM2	16	2815417	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	588748	2815417	87539336	570	123811											
SRRM2	23524	broad.mit.edu	37	chr16	2815544	2815544	+	Frame_Shift_Del	DEL	C	-	-													cagaactgctcgcagaggttCcaggtcatcaccagagccca							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2815544	-	-	2815544	7	5	143	1	0	1	0	1	0	0	0	0	15287	855	30	0	5053	0	SRRM2	16	2815544	Frame_Shift_Del	DEL	C	TCGA-49-4514-01A-21D-1855-08	127	2815544	87539209	571	123812											
A2BP1	54715	broad.mit.edu	37	chr16	7568296	7568296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacaggccagaccacggttCccgagcacacattaaacctg	8	15	0	1	rs137880529	byFrequency	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7568296	A	A	7568296	3	1	143	1	0	0	0	0	1	0	0	0	3	855	30	3	272	3	A2BP1	16	7568296	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4752752	7568296	82786457	572	123813											
A2BP1	54715	broad.mit.edu	37	chr16	7629920	7629920	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacctcagacaaatgtttGgtgtaagtatcacctttctt	8	9	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7629920	T	T	7629920	3	4	143	1	0	0	0	0	1	0	0	0	3	1348	47	2	513	2	A2BP1	16	7629920	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	61624	7629920	82724833	573	123814											
GRIN2A	2903	broad.mit.edu	37	chr16	9858390	9858390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggtctagagttcgctttgGattctgtgctcacggccacc	13	11	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9858390	T	T	9858390	3	4	143	1	0	0	0	0	1	0	0	0	6845	1174	41	3	1387	3	GRIN2A	16	9858390	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2228470	9858390	80496363	574	123815											
MKL2	57496	broad.mit.edu	37	chr16	14340374	14340374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttaaggggtctgccagtGtcaggcaccaaaccggacct	12	11	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14340374	T	T	14340374	2	4	143	1	0	0	0	0	0	0	0	1	9695	1364	48	3		3	MKL2	16	14340374	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	4481984	14340374	76014379	575	123816											
NOMO1	23420	broad.mit.edu	37	chr16	14951444	14951444	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgctcagaaagagcacctCtactttgaaacggtcaccat	7	12	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14951444	G	G	14951444	2	3	143	1	0	0	0	0	0	0	0	1	10626	900	32	4		4	NOMO1	16	14951444	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	611070	14951444	75403309	576	123817											
ACSM2A	123876	broad.mit.edu	37	chr16	20490093	20490094	+	Intron	DNP	GC	AA	AA													tgttctgaaacttccaagagGcactagatgtggagacaaag							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20490094	AA	AA	20490093	1	1	143	0	1	0	0	0	0	0	0	0	183	1218	42	4		4	ACSM2A	16	20490093	Intron	DNP	GC	TCGA-49-4514-01A-21D-1855-08	5538649	20490093	69864660	577	123818											
ACSM1	116285	broad.mit.edu	37	chr16	20702413	20702413	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcttggggctccaaattctGataaagaccggcagcgcagc	11	11	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20702413	C	C	20702413	4	2	143	1	0	0	0	0	0	1	0	0	182	1294	45	4	1687	4	ACSM1	16	20702413	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	212320	20702413	69652340	578	123819											
ZP2	7783	broad.mit.edu	37	chr16	21210257	21210257	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtgtcaatggaatgcttaGaagtagaagctctctggagt	13	5	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21210257	T	T	21210257	1	4	143	0	1	0	0	0	0	0	0	0	18345	957	33	3		3	ZP2	16	21210257	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	507844	21210257	69144496	579	123820											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25255245	25255245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcccagcctgtaggttcCtggggttcaacctcaatacc	10	13	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25255245	A	A	25255245	3	1	143	1	0	0	0	0	1	0	0	0	17813	680	24	2	1069	2	ZKSCAN2	16	25255245	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4044988	25255245	65099508	580	123821											
XPO6	23214	broad.mit.edu	37	chr16	28167672	28167672	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcgtgcaaagtggaagaTggtggtaaggagggatgggg	19	2	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28167672	C	C	28167672	3	2	143	1	0	0	0	0	1	0	0	0	17575	1464	51	5	2629	5	XPO6	16	28167672	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	2912427	28167672	62187081	581	123822											
SULT1A1	6817	broad.mit.edu	37	chr16	28620117	28620117	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctctgcaaagtacttgatGagcgggacccccttcacgta	10	13	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28620117	A	A	28620117	2	1	143	1	0	0	0	0	0	0	0	1	15490	1277	45	4		4	SULT1A1	16	28620117	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	452445	28620117	61734636	582	123823											
SPNS1	83985	broad.mit.edu	37	chr16	28995569	28995569	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacgaccggattgtggtGccccagcggggccgctccac	14	15	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28995569	T	T	28995569	2	4	143	1	0	0	0	0	0	0	0	1	15192	1306	46	3		3	SPNS1	16	28995569	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	375452	28995569	61359184	583	123824											
SEZ6L2	26470	broad.mit.edu	37	chr16	29891088	29891088	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcttgggtggatgaagtcTggatgtgcagccttcctttc	14	8	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29891088	A	A	29891088	1	1	143	0	1	0	0	0	0	0	0	0	14257	1595	55	5		5	SEZ6L2	16	29891088	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	895519	29891088	60463665	584	123825											
SRCAP	10847	broad.mit.edu	37	chr16	30734165	30734165	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccttccctcagtgttgtTttcccttgcgaatatctatg	7	12	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30734165	G	G	30734165	1	3	143	0	1	0	0	0	0	0	0	0	15253	1856	64	5		5	SRCAP	16	30734165	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	843077	30734165	59620588	585	123826											
ZNF646	9726	broad.mit.edu	37	chr16	31088711	31088711	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agatgctgaatggctctgcgGagctcagcacctctggggag	15	10	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31088711	A	A	31088711	3	1	143	1	0	0	0	0	1	0	0	0	18189	1175	41	4	1068	4	ZNF646	16	31088711	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	354546	31088711	59266042	586	123827											
ABCC11	85320	broad.mit.edu	37	chr16	48256677	48256677	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagggcaaagcagagtccCactccatggacaacattccc	8	13	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48256677	T	T	48256677	2	4	143	1	0	0	0	0	0	0	0	1	51	581	21	4		4	ABCC11	16	48256677	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	17167966	48256677	42098076	587	123828											
NUDT21	11051	broad.mit.edu	37	chr16	56485055	56485055	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctggatgtacttgttgccGaactgagtgaccccccgggg	14	11	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56485055	A	A	56485055	2	1	143	1	0	0	0	0	0	0	0	1	10833	1049	37	4		4	NUDT21	16	56485055	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	8228378	56485055	33869698	588	123829											
CDH8	1006	broad.mit.edu	37	chr16	61851450	61851450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacggagtttagagcagCattttcatgaacttcaagta	8	7	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61851450	A	A	61851450	3	1	143	1	0	0	0	0	1	0	0	0	3146	710	25	3	1213	3	CDH8	16	61851450	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5366395	61851450	28503303	589	123830											
RANBP10	57610	broad.mit.edu	37	chr16	67763221	67763221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactgctgtggtgctgggaCttggtggagtctgttgagtt	17	5	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67763221	A	A	67763221	3	1	143	1	0	0	0	0	1	0	0	0	13134	564	20	3	568	3	RANBP10	16	67763221	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5911771	67763221	22591532	590	123831											
CDH3	1001	broad.mit.edu	37	chr16	68721600	68721600	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaggcccagctcacagatGactcagacatctactggacg	9	14	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68721600	T	T	68721600	3	4	143	1	0	0	0	0	1	0	0	0	3141	1290	45	3	1802	3	CDH3	16	68721600	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	958379	68721600	21633153	591	123832											
AP1G1	164	broad.mit.edu	37	chr16	71772945	71772945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggggttggtatttgacCgttcaaaggtgaattctatc	11	7	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71772945	A	A	71772945	3	1	143	1	0	0	0	0	1	0	0	0	734	652	23	1	312	1	AP1G1	16	71772945	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3051345	71772945	18581808	592	123833											
ADAMTS18	170692	broad.mit.edu	37	chr16	77359817	77359817	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatccacggaaaggtttgcTgttatattctgcacactgtt	8	10	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77359817	A	A	77359817	3	1	143	1	0	0	0	0	1	0	0	0	263	1580	55	5	1731	5	ADAMTS18	16	77359817	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	5586872	77359817	12994936	593	123834											
HSDL1	83693	broad.mit.edu	37	chr16	84164680	84164680	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatccgacttcacagaaaaGattattttgattataaagta	6	6	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84164680	C	C	84164680	1	2	143	0	1	0	0	0	0	0	0	0	7460	957	33	4		4	HSDL1	16	84164680	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6804863	84164680	6190073	594	123835											
ABR	29	broad.mit.edu	37	chr17	913927	913927	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgggcagggagtcctggctCagtctggcccagcccagtcc	14	16	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	913927	T	T	913927	1	4	143	0	1	0	0	0	0	0	0	0	99	841	29	4		4	ABR	17	913927	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08		913927	80281283	595	123836											
ENO3	2027	broad.mit.edu	37	chr17	4858676	4858676	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacaaggggcactggagtctCaggtcctttcttggtcctcc	12	12	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4858676	T	T	4858676	1	4	143	0	1	0	0	0	0	0	0	0	5165	841	29	4		4	ENO3	17	4858676	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3944749	4858676	76336534	596	123837											
FXR2	9513	broad.mit.edu	37	chr17	7495463	7495463	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactggtctaaactccatcaGacacagctgcctctgcaatt	6	14	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7495463	A	A	7495463	1	1	143	0	1	0	0	0	0	0	0	0	6176	957	33	4		4	FXR2	17	7495463	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2636787	7495463	73699747	597	123838											
TP53	7157	broad.mit.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0	rs28934578		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578406	T	T	7578406	3	4	143	1	0	0	0	0	1	0	0	0	16505	768	27	4	774	4	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	82943	7578406	73616804	598	123839											
PER1	5187	broad.mit.edu	37	chr17	8049893	8049893	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagagcccgaggtggagaaGatgcctggcaggccttacct	14	10	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8049893	A	A	8049893	1	1	143	0	1	0	0	0	0	0	0	0	11823	957	33	4		4	PER1	17	8049893	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	471487	8049893	73145317	599	123840											
MYH8	4626	broad.mit.edu	37	chr17	10299657	10299657	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatatgtacctctgcttccTctaaagcagcctgaatttca	5	11	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10299657	A	A	10299657	3	1	143	1	0	0	0	0	1	0	0	0	10135	1551	54	5	1202	5	MYH8	17	10299657	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	2249764	10299657	70895553	600	123841											
MYH4	4622	broad.mit.edu	37	chr17	10351278	10351278	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatttctgctcctgatctCagcatccagtgtactctgca	6	13	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10351278	T	T	10351278	3	4	143	1	0	0	0	0	1	0	0	0	10131	835	29	4	1025	4	MYH4	17	10351278	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	51621	10351278	70843932	601	123842											
DNAH9	1770	broad.mit.edu	37	chr17	11671895	11671895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaagaaattcgagccttgGtccaagctcgtcccccagtt	8	14	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11671895	T	T	11671895	3	4	143	1	0	0	0	0	1	0	0	0	4648	1270	44	3	7442	3	DNAH9	17	11671895	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1320617	11671895	69523315	602	123843											
MAP2K4	6416	broad.mit.edu	37	chr17	12019131	12019131	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttctgggacagctctgctGacaggagctgcactgtgcga	14	11	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12019131	A	A	12019131	1	1	143	0	1	0	0	0	0	0	0	0	9331	1305	45	4		4	MAP2K4	17	12019131	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	347236	12019131	69176079	603	123844											
ALDH3A2	224	broad.mit.edu	37	chr17	19555892	19555892	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttataaagccttctgaactgAgtgaaaatacagccaagatc	7	8	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19555892	T	T	19555892	3	4	143	1	0	0	0	0	1	0	0	0	498	304	11	5	428	5	ALDH3A2	17	19555892	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	7536761	19555892	61639318	604	123845											
SLC46A1	113235	broad.mit.edu	37	chr17	26732045	26732045	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagcagaaagctgcatagaGagtcatggctatcagcaagg	12	7	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26732045	C	C	26732045	3	2	143	1	0	0	0	0	1	0	0	0	14758	942	33	4	726	4	SLC46A1	17	26732045	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	7176153	26732045	54463165	605	123846											
KIAA0100	9703	broad.mit.edu	37	chr17	26962061	26962061	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcccttgatgtagtcccttCagccacttctgaactcccac	6	16	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26962061	T	T	26962061	2	4	143	1	0	0	0	0	0	0	0	1	8224	813	29	4		4	KIAA0100	17	26962061	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	230016	26962061	54233149	606	123847											
MMP28	79148	broad.mit.edu	37	chr17	34094989	34094989	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccatcagcttcctgctgtCtttccaggaaagatgctgtc	9	12	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34094989	A	A	34094989	1	1	143	0	1	0	0	0	0	0	0	0	9759	928	32	3		3	MMP28	17	34094989	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	7132928	34094989	47100221	607	123848											
DHRS11	79154	broad.mit.edu	37	chr17	34955412	34955412	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatagtgccaccaagtatgCcgtcactgcgctgacagagg	11	12	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34955412	T	T	34955412	3	4	143	1	0	0	0	0	1	0	0	0	4527	739	26	4	529	4	DHRS11	17	34955412	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	860423	34955412	46239798	608	123849											
GSDMB	55876	broad.mit.edu	37	chr17	38062106	38062106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacccttcctcacctagcaGggcatccaggaagtccagaa	9	14	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38062106	T	T	38062106	3	4	143	1	0	0	0	0	1	0	0	0	6883	991	35	2	241	2	GSDMB	17	38062106	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3106694	38062106	43133104	609	123850											
KRT26	353288	broad.mit.edu	37	chr17	38926533	38926533	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactttttttgaggtaggtcAattcctcactgagggtctca	10	8	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38926533	G	G	38926533	3	3	143	1	0	0	0	0	1	0	0	0	8534	131	5	5	777	5	KRT26	17	38926533	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	864427	38926533	42268677	610	123851											
KRT20	54474	broad.mit.edu	37	chr17	39032579	39032579	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gattatagccaaatttctttCaaaacctcagcagcatctcc	4	12	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39032579	G	G	39032579	1	3	143	0	1	0	0	0	0	0	0	0	8529	841	29	4		4	KRT20	17	39032579	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	106046	39032579	42162631	611	123852											
DHX58	79132	broad.mit.edu	37	chr17	40259997	40259997	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccagaagggctgcccctctCaccagcctcactcagcttca	8	18	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40259997	T	T	40259997	1	4	143	0	1	0	0	0	0	0	0	0	4554	841	29	4		4	DHX58	17	40259997	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1227418	40259997	40935213	612	123853											
PSMC3IP	29893	broad.mit.edu	37	chr17	40729714	40729714	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttactcatcgcctttccCgccacccaactcagaaagcc	4	19	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40729714	T	T	40729714	1	4	143	0	1	0	0	0	0	0	0	0	12794	667	23	4		4	PSMC3IP	17	40729714	5'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	469717	40729714	40465496	613	123854											
EZH1	2145	broad.mit.edu	37	chr17	40880977	40880977	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcttgctgtaatctaagaGagacagagatgagaaatagc	10	6	2	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40880977	C	C	40880977	1	2	143	0	1	0	0	0	0	0	0	0	5376	957	33	4		4	EZH1	17	40880977	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	151263	40880977	40314233	614	123855											
PSME3	10197	broad.mit.edu	37	chr17	40985622	40985622	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagcgcctccggtgtccaGaggatcggacacggcccggc	14	16	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40985622	T	T	40985622	1	4	143	0	1	0	0	0	0	0	0	0	12814	957	33	3		3	PSME3	17	40985622	5'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	104645	40985622	40209588	615	123856											
C17orf46	124783	broad.mit.edu	37	chr17	43332645	43332645	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcagtggtgctctggcttCgcgtggtttctctggcaggg	15	9	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43332645	T	T	43332645	3	4	143	1	0	0	0	0	1	0	0	0	1873	893	31	4	258	4	C17orf46	17	43332645	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2347023	43332645	37862565	616	123857											
LRRC37A	9884	broad.mit.edu	37	chr17	44399672	44399672	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatgcaggttattttaattCtattccatttttcagaattc	4	6	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44399672	G	G	44399672	1	3	143	0	1	0	0	0	0	0	0	0	9078	928	32	4		4	LRRC37A	17	44399672	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1067027	44399672	36795538	617	123858											
NXPH3	11248	broad.mit.edu	37	chr17	47656116	47656116	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctagggctgctggccccGcctggggaggcttggggcat	17	13	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47656116	T	T	47656116	2	4	143	1	0	0	0	0	0	0	0	1	10887	1074	38	3		3	NXPH3	17	47656116	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	3256444	47656116	33539094	618	123859											
APPBP2	10513	broad.mit.edu	37	chr17	58571907	58571907	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagagcaccgcctactgaatGagtaggccaagactgaagca	11	10	0	5			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58571907	C	C	58571907	4	2	143	1	0	0	0	0	0	1	0	0	818	1294	45	4	1502	4	APPBP2	17	58571907	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	10915791	58571907	22623303	619	123860											
MED13	9969	broad.mit.edu	37	chr17	60032987	60032987	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataaattgtatataatactTaaaaacttaactgcataaag	3	4	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60032987	A	A	60032987	1	1	143	0	1	0	0	0	0	0	0	0	9523	1769	61	5		5	MED13	17	60032987	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	1461080	60032987	21162223	620	123861											
CSH1	1442	broad.mit.edu	37	chr17	61973979	61973979	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataccctggccagttctcTctccctgcttgaccccacct	5	18	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61973979	C	C	61973979	1	2	143	0	1	0	0	0	0	0	0	0	3974	1566	54	5		5	CSH1	17	61973979	5'UTR	SNP	T	TCGA-49-4514-01A-21D-1855-08	1940992	61973979	19221231	621	123862											
CACNG5	27091	broad.mit.edu	37	chr17	64881158	64881158	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacaccgcggaggacatgtAcaggccccaccctggcttct	11	15	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64881158	T	T	64881158	3	4	143	1	0	0	0	0	1	0	0	0	2586	391	14	5	964	5	CACNG5	17	64881158	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	2907179	64881158	16314052	622	123863											
OTOP3	347741	broad.mit.edu	37	chr17	72943237	72943237	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcactgggccagatgggcatCgcctatttctccatcgtggc	12	13	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72943237	T	T	72943237	2	4	143	1	0	0	0	0	0	0	0	1	11401	874	31	4		4	OTOP3	17	72943237	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	8062079	72943237	8251973	623	123864											
GGA3	23163	broad.mit.edu	37	chr17	73235425	73235425	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggctataggccccaccGccccacccacctcaatcctc	6	22	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73235425	A	A	73235425	1	1	143	0	1	0	0	0	0	0	0	0	6418	1102	38	4		4	GGA3	17	73235425	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	292188	73235425	7959785	624	123865											
CYTH1	9267	broad.mit.edu	37	chr17	76677204	76677204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctcgccggtgactcagCcgaactttcctgctttctcc	7	16	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76677204	A	A	76677204	1	1	143	0	1	0	0	0	0	0	0	0	4236	754	26	3		3	CYTH1	17	76677204	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3441779	76677204	4518006	625	123866											
CANT1	124583	broad.mit.edu	37	chr17	76993299	76993299	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtccccactgtctgacaGggtcaggtagccctttttca	9	13	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76993299	T	T	76993299	3	4	143	1	0	0	0	0	1	0	0	0	2643	991	35	2	811	2	CANT1	17	76993299	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	316095	76993299	4201911	626	123867											
TBC1D16	125058	broad.mit.edu	37	chr17	77921509	77921509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgttctgcatcaaacccaCaaagcaccagaaggtgtctg	9	12	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77921509	A	A	77921509	3	1	143	1	0	0	0	0	1	0	0	0	15724	478	17	3	656	3	TBC1D16	17	77921509	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	928210	77921509	3273701	627	123868											
BAIAP2	10458	broad.mit.edu	37	chr17	79058648	79058648	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaggagacgttctcttccaGatggctgaagtccacaggca	11	12	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79058648	A	A	79058648	2	1	143	1	0	0	0	0	0	0	0	1	1306	933	33	4		4	BAIAP2	17	79058648	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	1137139	79058648	2136562	628	123869											
TBCD	6904	broad.mit.edu	37	chr17	80772804	80772804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgccgtctcgactcGtggatggtgagtagctgagg	16	8	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80772804	T	T	80772804	3	4	143	1	0	0	0	0	1	0	0	0	15755	1145	40	3	1362	3	TBCD	17	80772804	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1714156	80772804	422406	629	123870											
METTL4	64863	broad.mit.edu	37	chr18	2544761	2544761	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctcctgaattggttatctGataggaaggagccaacaaaa	9	7	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2544761	C	C	2544761	1	2	143	0	1	0	0	0	0	0	0	0	9595	1305	45	4		4	METTL4	18	2544761	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08		2544761	75532487	630	123871											
ANKRD12	23253	broad.mit.edu	37	chr18	9195663	9195663	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttccttttactattagcCcatcaagaaatgaagaacga	5	9	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9195663	T	T	9195663	3	4	143	1	0	0	0	0	1	0	0	0	640	623	22	4	208	4	ANKRD12	18	9195663	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	6650902	9195663	68881585	631	123872											
PPP4R1	9989	broad.mit.edu	37	chr18	9550019	9550019	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcttctaggagaaaaactCacaaacaggtaagcccaggg	9	9	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9550019	T	T	9550019	1	4	143	0	1	0	0	0	0	0	0	0	12504	841	29	4		4	PPP4R1	18	9550019	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	354356	9550019	68527229	632	123873											
CEP192	55125	broad.mit.edu	37	chr18	13124735	13124735	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggcaagagtattgctaTtcgactaattggtgaagctc	11	6	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13124735	G	G	13124735	3	3	143	1	0	0	0	0	1	0	0	0	3281	1493	52	5	7754	5	CEP192	18	13124735	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	3574716	13124735	64952513	633	123874											
CDH2	1000	broad.mit.edu	37	chr18	25570157	25570157	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcttggcgaatgatcttaGgattgggggcaaaataaggg	14	5	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25570157	C	C	25570157	3	2	143	1	0	0	0	0	1	0	0	0	3135	1000	35	4	1246	4	CDH2	18	25570157	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	12445422	25570157	52507091	634	123875											
DSC3	1825	broad.mit.edu	37	chr18	28584107	28584107	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaaagtgaaaatacttaCaaaagagcagtgctataccc	7	8	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28584107	A	A	28584107	5	1	143	1	0	0	0	0	0	0	1	0	4807	492	17	3	623	3	DSC3	18	28584107	Splice_Site	SNP	C	TCGA-49-4514-01A-21D-1855-08	3013950	28584107	49493141	635	123876											
DSG4	147409	broad.mit.edu	37	chr18	28971276	28971276	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgagcctggttctgtcCtatgtgtggacatactcaac	9	11	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28971276	T	T	28971276	1	4	143	0	1	0	0	0	0	0	0	0	4819	696	24	4		4	DSG4	18	28971276	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	387169	28971276	49105972	636	123877											
KIAA1328	57536	broad.mit.edu	37	chr18	34539178	34539178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatatgattgcatttctgGttctgttttgtttattggaa	8	4	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34539178	T	T	34539178	1	4	143	0	1	0	0	0	0	0	0	0	8295	1276	44	3		3	KIAA1328	18	34539178	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	5567902	34539178	43538070	637	123878											
SETBP1	26040	broad.mit.edu	37	chr18	42530624	42530624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagaaagccttggcttctgGaatcaccatgagcagtgaag	12	8	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42530624	T	T	42530624	3	4	143	1	0	0	0	0	1	0	0	0	14242	1174	41	3	1522	3	SETBP1	18	42530624	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	7991446	42530624	35546624	638	123879											
RNF165	494470	broad.mit.edu	37	chr18	44030673	44030673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctctttccaggagctgCtgcagctcgaggacaggttg	12	10	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44030673	A	A	44030673	3	1	143	1	0	0	0	0	1	0	0	0	13567	796	28	3	749	3	RNF165	18	44030673	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1500049	44030673	34046575	639	123880											
MYO5B	4645	broad.mit.edu	37	chr18	47375931	47375931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacacactcactcacacccCcctaccttctaggtcctggg	5	18	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47375931	T	T	47375931	1	4	143	0	1	0	0	0	0	0	0	0	10173	638	22	4		4	MYO5B	18	47375931	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3345258	47375931	30701317	640	123881											
VPS4B	9525	broad.mit.edu	37	chr18	61058216	61058216	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgtctttggcttagccttCttgaccaaaatcttctgtaa	6	10	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61058216	T	T	61058216	3	4	143	1	0	0	0	0	1	0	0	0	17340	922	32	4	11	4	VPS4B	18	61058216	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	13682285	61058216	17019032	641	123882											
ZNF554	115196	broad.mit.edu	37	chr19	2827751	2827751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctccctgggtaaggcaaGcatcactaattcctgtgttc	10	11	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2827751	T	T	2827751	1	4	143	0	1	0	0	0	0	0	0	0	18112	986	34	3		3	ZNF554	19	2827751	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08		2827751	56301232	642	123883											
KHSRP	8570	broad.mit.edu	37	chr19	6422415	6422415	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggagtgctgttattcactgtCgtggcagcatcgcctccaat	11	11	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6422415	T	T	6422415	2	4	143	1	0	0	0	0	0	0	0	1	8221	871	31	4		4	KHSRP	19	6422415	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	3594664	6422415	52706568	643	123884											
MUC16	94025	broad.mit.edu	37	chr19	9065535	9065535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taatgatttttcttgtggtgGatatttctggcaacattgtg	10	4	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9065535	T	T	9065535	3	4	143	1	0	0	0	0	1	0	0	0	10067	1174	41	3	21940	3	MUC16	19	9065535	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2643120	9065535	50063448	644	123885											
KEAP1	9817	broad.mit.edu	37	chr19	10600447	10600447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccacggcataaaggagacGattgaggacagccacgccca	11	14	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10600447	T	T	10600447	3	4	143	1	0	0	0	0	1	0	0	0	8211	1058	37	3	478	3	KEAP1	19	10600447	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1534912	10600447	48528536	645	123886											
MAST1	22983	broad.mit.edu	37	chr19	12975954	12975954	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaacttatatgaaggcCacatcgagaaggacgcccga	9	13	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12975954	G	G	12975954	3	3	143	1	0	0	0	0	1	0	0	0	9416	594	21	4	1654	4	MAST1	19	12975954	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	2375507	12975954	46153029	646	123887											
CLEC17A	388512	broad.mit.edu	37	chr19	14706002	14706002	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccccctaaattctgacCagagaacaaaacagaggttg	8	12	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14706002	T	T	14706002	1	4	143	0	1	0	0	0	0	0	0	0	3533	609	21	4		4	CLEC17A	19	14706002	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1730048	14706002	44422981	647	123888											
HAPLN4	404037	broad.mit.edu	37	chr19	19368865	19368865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcgcgcactgccatcggCcagccaacccgcggtgcagc	13	17	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19368865	A	A	19368865	3	1	143	1	0	0	0	0	1	0	0	0	7023	739	26	3	242	3	HAPLN4	19	19368865	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	4662863	19368865	39760118	648	123889											
HAPLN4	404037	broad.mit.edu	37	chr19	19369648	19369648	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcggcctccacgggggtgGtagggaaagaccacgcctgg	16	11	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19369648	A	A	19369648	2	1	143	1	0	0	0	0	0	0	0	1	7023	1256	44	4		4	HAPLN4	19	19369648	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	783	19369648	39759335	649	123890											
ZNF90	7643	broad.mit.edu	37	chr19	20211404	20211404	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaggaaatctcaactGcatgacccctactacaccgc	5	18	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20211404	C	C	20211404	1	2	143	0	1	0	0	0	0	0	0	0	18328	1334	46	4		4	ZNF90	19	20211404	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	841756	20211404	38917579	650	123891											
ZNF492	57615	broad.mit.edu	37	chr19	22817242	22817242	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtattgggagatccacagCtaagacgctaggaccccctg	12	11	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22817242	T	T	22817242	1	4	143	0	1	0	0	0	0	0	0	0	18070	812	28	4		4	ZNF492	19	22817242	5'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	2605838	22817242	36311741	651	123892											
ZNF99	7652	broad.mit.edu	37	chr19	22941944	22941944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattcttcacatttgcagGgtttctttccagtatgaatt	6	9	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22941944	T	T	22941944	1	4	143	0	1	0	0	0	0	0	0	0	18333	1247	43	2		2	ZNF99	19	22941944	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	124702	22941944	36187039	652	123893											
DPY19L3	147991	broad.mit.edu	37	chr19	32954755	32954755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactagtacttctgacttgcGcctgtgtctgttcttgcaga	9	10	3	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32954755	T	T	32954755	1	4	143	0	1	0	0	0	0	0	0	0	4782	1102	38	3		3	DPY19L3	19	32954755	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	10012811	32954755	26174228	653	123894											
FXYD3	5349	broad.mit.edu	37	chr19	35612270	35612270	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagatacgaagggactagGatggggttactgaatatgcc	13	6	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35612270	T	T	35612270	1	4	143	0	1	0	0	0	0	0	0	0	6179	1189	41	3		3	FXYD3	19	35612270	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	2657515	35612270	23516713	654	123895											
ATP4A	495	broad.mit.edu	37	chr19	36051326	36051326	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagagggctctcgtgcgtGcactcgggtgagcgggtctg	17	11	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36051326	T	T	36051326	4	4	143	1	0	0	0	0	0	1	0	0	1149	1311	46	3	2449	3	ATP4A	19	36051326	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	439056	36051326	23077657	655	123896											
CAPN12	147968	broad.mit.edu	37	chr19	39225520	39225520	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttcttcctcctagtccagGaaagagggcttgtgaggcca	12	10	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39225520	A	A	39225520	1	1	143	0	1	0	0	0	0	0	0	0	2651	1189	41	4		4	CAPN12	19	39225520	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	3174194	39225520	19903463	656	123897											
DLL3	10683	broad.mit.edu	37	chr19	39996085	39996085	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcagcctgcagccatgcCgcaatggtgaggcctggagg	17	11	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39996085	T	T	39996085	3	4	143	1	0	0	0	0	1	0	0	0	4607	652	23	4	1109	4	DLL3	19	39996085	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	770565	39996085	19132898	657	123898											
CYP2B6	1555	broad.mit.edu	37	chr19	41522587	41522587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgaaggcatcgcccgtgCggaattgttcctcttcttca	11	11	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41522587	A	A	41522587	3	1	143	1	0	0	0	0	1	0	0	0	4197	768	27	3	1365	3	CYP2B6	19	41522587	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1526502	41522587	17606396	658	123899											
CYP2A13	1553	broad.mit.edu	37	chr19	41594577	41594577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcctaaggcagggagatGggtggcacggggtgggggct	22	6	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41594577	T	T	41594577	1	4	143	0	1	0	0	0	0	0	0	0	4194	1363	47	2		2	CYP2A13	19	41594577	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	71990	41594577	17534406	659	123900											
TGFB1	7040	broad.mit.edu	37	chr19	41858709	41858709	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggtcgcgggtgctgttgtAcagggcgagcacggcctcgg	18	12	0	0	rs111033611		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41858709	G	G	41858709	3	3	143	1	0	0	0	0	1	0	0	0	15939	391	14	5	959	5	TGFB1	19	41858709	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	264132	41858709	17270274	660	123901											
ATP1A3	478	broad.mit.edu	37	chr19	42474743	42474743	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatgccagggagccccaCtccctctgcccctcctctgc	8	22	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42474743	A	A	42474743	1	1	143	0	1	0	0	0	0	0	0	0	1134	580	20	3		3	ATP1A3	19	42474743	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	616034	42474743	16654240	661	123902											
PSG8	440533	broad.mit.edu	37	chr19	43262225	43262225	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtatttcacattcatagggtCctgcagtgtactttgtgaca	9	8	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43262225	G	G	43262225	3	3	143	1	0	0	0	0	1	0	0	0	12767	855	30	4	675	4	PSG8	19	43262225	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	787482	43262225	15866758	662	123903											
PSG6	5675	broad.mit.edu	37	chr19	43418921	43418921	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgttatgtgagagctcctGagtgtgtctctctcactggg	12	8	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43418921	C	C	43418921	1	2	143	0	1	0	0	0	0	0	0	0	12765	1305	45	4		4	PSG6	19	43418921	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	156696	43418921	15710062	663	123904											
PSG6	5675	broad.mit.edu	37	chr19	43421920	43421920	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtgatgtgctgagtgcAgggaggggctgagaggggtc	21	6	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43421920	G	G	43421920	3	3	143	1	0	0	0	0	1	0	0	0	12765	188	7	5	1345	5	PSG6	19	43421920	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	2999	43421920	15707063	664	123905											
PSG2	5670	broad.mit.edu	37	chr19	43576027	43576027	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgccggtgggttagagttCgcgaagcaagacaagtagag	16	6	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43576027	A	A	43576027	2	1	143	1	0	0	0	0	0	0	0	1	12761	871	31	3		3	PSG2	19	43576027	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	154107	43576027	15552956	665	123906											
CD37	951	broad.mit.edu	37	chr19	49839067	49839067	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggggggctggggcaggtggGagggcctcccccaacccaag	19	12	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49839067	A	A	49839067	1	1	143	0	1	0	0	0	0	0	0	0	3038	1189	41	4		4	CD37	19	49839067	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6263040	49839067	9289916	666	123907											
PIH1D1	55011	broad.mit.edu	37	chr19	49951179	49951179	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgctgttctggggtgacagaGagggaaaagacaggcggtgg	19	6	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49951179	C	C	49951179	1	2	143	0	1	0	0	0	0	0	0	0	12001	957	33	4		4	PIH1D1	19	49951179	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	112112	49951179	9177804	667	123908											
KLK5	25818	broad.mit.edu	37	chr19	51447019	51447019	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctgcagggagccattgcaGaccacaggccccccagaatc	10	17	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51447019	T	T	51447019	2	4	143	1	0	0	0	0	0	0	0	1	8478	929	33	3		3	KLK5	19	51447019	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	1495840	51447019	7681964	668	123909											
SIGLEC7	27036	broad.mit.edu	37	chr19	51645668	51645668	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccctgctctgggggagggaGagggtggaaggacagaagag	20	7	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51645668	C	C	51645668	3	2	143	1	0	0	0	0	1	0	0	0	14426	933	33	4	44	4	SIGLEC7	19	51645668	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	198649	51645668	7483315	669	123910											
ZNF613	79898	broad.mit.edu	37	chr19	52447376	52447376	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcttctttcctagaaatCaagaaagttgacaatcatct	4	9	5	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52447376	G	G	52447376	3	3	143	1	0	0	0	0	1	0	0	0	18165	816	29	4	254	4	ZNF613	19	52447376	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	801708	52447376	6681607	670	123911											
ZNF331	55422	broad.mit.edu	37	chr19	54079846	54079846	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggtgattcacatttattCtactggataatttttatttc	6	6	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54079846	G	G	54079846	1	3	143	0	1	0	0	0	0	0	0	0	17975	928	32	4		4	ZNF331	19	54079846	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1632470	54079846	5049137	671	123912											
RPS9	6203	broad.mit.edu	37	chr19	54705039	54705039	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccgcgcaggcgcagacgggGaagcggagccaacatgccag	16	14	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54705039	A	A	54705039	1	1	143	0	1	0	0	0	0	0	0	0	13773	1189	41	4		4	RPS9	19	54705039	5'UTR	SNP	G	TCGA-49-4514-01A-21D-1855-08	625193	54705039	4423944	672	123913											
LILRB5	10990	broad.mit.edu	37	chr19	54756308	54756308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggggcagtgagagggctGtgcgggtggatgggagtctt	22	4	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54756308	T	T	54756308	1	4	143	0	1	0	0	0	0	0	0	0	8866	1392	48	3		3	LILRB5	19	54756308	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	51269	54756308	4372675	673	123914											
PTPRH	5794	broad.mit.edu	37	chr19	55711859	55711859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatatggaggtttctcaCtgggttgggggctgagaaag	15	7	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55711859	A	A	55711859	3	1	143	1	0	0	0	0	1	0	0	0	12911	565	20	3	2238	3	PTPRH	19	55711859	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	955551	55711859	3417124	674	123915											
NLRP4	147945	broad.mit.edu	37	chr19	56370564	56370564	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctccagcttgaggaaacTctgtttttccgttcaaaatg	8	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56370564	A	A	56370564	3	1	143	1	0	0	0	0	1	0	0	0	10574	1551	54	5	1811	5	NLRP4	19	56370564	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	658705	56370564	2758419	675	123916											
ZIM3	114026	broad.mit.edu	37	chr19	57646704	57646704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatatgctacatttatagGgtttctctcccgtgtgtatt	7	9	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57646704	T	T	57646704	3	4	143	1	0	0	0	0	1	0	0	0	17811	1232	43	2	421	2	ZIM3	19	57646704	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1276140	57646704	1482279	676	123917											
SIRPB2	284759	broad.mit.edu	37	chr20	1459268	1459268	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctcctgaagccaaagaggAggtccttgttgaattccctc	10	11	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1459268	G	G	1459268	1	3	143	0	1	0	0	0	0	0	0	0	14447	319	11	5		5	SIRPB2	20	1459268	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08		1459268	61566252	677	123918											
RRBP1	6238	broad.mit.edu	37	chr20	17602407	17602407	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttgagatcctgcagccaCtcggtgtaattctgcaatga	9	10	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17602407	T	T	17602407	2	4	143	1	0	0	0	0	0	0	0	1	13789	564	20	4		4	RRBP1	20	17602407	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	16143139	17602407	45423113	678	123919											
XRN2	22803	broad.mit.edu	37	chr20	21314221	21314221	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcttccttgtgcagaaggaGagtttatcttccttcggctt	10	9	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21314221	C	C	21314221	3	2	143	1	0	0	0	0	1	0	0	0	17587	943	33	4	936	4	XRN2	20	21314221	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3711814	21314221	41711299	679	123920											
TMEM90B	79953	broad.mit.edu	37	chr20	24646222	24646222	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataccgcatgatgctgtaCagtacaaatgattgccaaat	8	9	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24646222	A	A	24646222	1	1	143	0	1	0	0	0	0	0	0	0	16342	493	17	3		3	TMEM90B	20	24646222	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	3332001	24646222	38379298	680	123921											
DEFB119	245932	broad.mit.edu	37	chr20	29965242	29965242	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcgaaggatgtggcgtttgCctgccaaaggaaaaaaaata	11	6	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29965242	G	G	29965242	3	3	143	1	0	0	0	0	1	0	0	0	4446	753	26	4	196	4	DEFB119	20	29965242	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5319020	29965242	33060278	681	123922											
KIAA1755	85449	broad.mit.edu	37	chr20	36874333	36874333	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttccctcttgacttacacAggctgcttctcgcacttgct	7	14	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36874333	T	T	36874333	3	4	143	1	0	0	0	0	1	0	0	0	8327	188	7	5	3455	5	KIAA1755	20	36874333	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	6909091	36874333	26151187	682	123923											
EMILIN3	90187	broad.mit.edu	37	chr20	39993607	39993607	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtggagttggcagctgctCtcagctgaaggcaggactgg	16	8	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39993607	G	G	39993607	1	3	143	0	1	0	0	0	0	0	0	0	5137	928	32	4		4	EMILIN3	20	39993607	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	3119274	39993607	23031913	683	123924											
MYBL2	4605	broad.mit.edu	37	chr20	42338633	42338633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatcagaagtactccatGgacaacactccccacacgcc	6	17	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42338633	T	T	42338633	3	4	143	1	0	0	0	0	1	0	0	0	10104	1348	47	2	1574	2	MYBL2	20	42338633	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2345026	42338633	20686887	684	123925											
SERINC3	10955	broad.mit.edu	37	chr20	43150529	43150529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcaaaccgcaggtccggCgaggactcgggaccccgaac	13	17	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43150529	A	A	43150529	1	1	143	0	1	0	0	0	0	0	0	0	14194	783	27	3		3	SERINC3	20	43150529	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	811896	43150529	19874991	685	123926											
STK4	6789	broad.mit.edu	37	chr20	43703736	43703736	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggagcaggagattgaagaGatccggcagaagtaccagtc	14	7	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43703736	C	C	43703736	3	2	143	1	0	0	0	0	1	0	0	0	15424	933	33	4	1425	4	STK4	20	43703736	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	553207	43703736	19321784	686	123927											
PIGT	51604	broad.mit.edu	37	chr20	44048080	44048080	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggggcggggggtgtatagaGaacctgcgccccatgccaag	18	10	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44048080	A	A	44048080	1	1	143	0	1	0	0	0	0	0	0	0	11994	957	33	4		4	PIGT	20	44048080	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	344344	44048080	18977440	687	123928											
NFATC2	4773	broad.mit.edu	37	chr20	50048903	50048903	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgagtagtggatcacaggcGaggcctgctggttggtcgga	18	7	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50048903	A	A	50048903	3	1	143	1	0	0	0	0	1	0	0	0	10457	1059	37	4	410	4	NFATC2	20	50048903	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	6000823	50048903	12976617	688	123929											
ZNF217	7764	broad.mit.edu	37	chr20	52198638	52198638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgctgctggtaccgaaaGcagtttttttggtgtgcacc	13	10	0	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52198638	T	T	52198638	3	4	143	1	0	0	0	0	1	0	0	0	17898	971	34	3	2434	3	ZNF217	20	52198638	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2149735	52198638	10826882	689	123930											
TFAP2C	7022	broad.mit.edu	37	chr20	55209278	55209278	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggttgaatcttccggccggGaggcggaaagccgctcatgt	16	10	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55209278	A	A	55209278	2	1	143	1	0	0	0	0	0	0	0	1	15912	1161	41	4		4	TFAP2C	20	55209278	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	3010640	55209278	7816242	690	123931											
CTCFL	140690	broad.mit.edu	37	chr20	56073662	56073662	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacgccttcatccacttcctCtttgactctggctgtggttt	7	14	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56073662	G	G	56073662	3	3	143	1	0	0	0	0	1	0	0	0	4035	922	32	4	59	4	CTCFL	20	56073662	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	864384	56073662	6951858	691	123932											
CTCFL	140690	broad.mit.edu	37	chr20	56090879	56090879	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggatcggacatggcgcttCaatttacttgcctaataaat	9	8	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56090879	G	G	56090879	3	3	143	1	0	0	0	0	1	0	0	0	4035	825	29	4	944	4	CTCFL	20	56090879	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	17217	56090879	6934641	692	123933											
DIDO1	11083	broad.mit.edu	37	chr20	61513077	61513077	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agctgcttcaggagccctttCcacctcgtggcgccgccctc	10	18	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61513077	G	G	61513077	3	3	143	1	0	0	0	0	1	0	0	0	4562	864	30	4	2495	4	DIDO1	20	61513077	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5422198	61513077	1512443	693	123934											
JAM2	58494	broad.mit.edu	37	chr21	27066141	27066141	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgacaagaagtgatgcgggGaaatatcgttgtgaagttag	15	3	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27066141	A	A	27066141	2	1	143	1	0	0	0	0	0	0	0	1	8013	1161	41	4		4	JAM2	21	27066141	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08		27066141	21063754	694	123935											
KRTAP27-1	643812	broad.mit.edu	37	chr21	31709806	31709806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcacaattggtcatttGgcagctggtggtttcattgc	11	8	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31709806	T	T	31709806	3	4	143	1	0	0	0	0	1	0	0	0	8616	1357	47	2	446	2	KRTAP27-1	21	31709806	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4643665	31709806	16420089	695	123936											
CLDN14	23562	broad.mit.edu	37	chr21	37858376	37858376	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaatggcttcattgttggGatccacacctgggaggttct	11	9	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37858376	T	T	37858376	1	4	143	0	1	0	0	0	0	0	0	0	3506	1189	41	3		3	CLDN14	21	37858376	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	6148570	37858376	10271519	696	123937											
ERG	2078	broad.mit.edu	37	chr21	39755277	39755277	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccgatagagtttgtggCgatgggctggtgaatgcacg	15	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39755277	T	T	39755277	1	4	143	0	1	0	0	0	0	0	0	0	5264	783	27	4		4	ERG	21	39755277	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	1896901	39755277	8374618	697	123938											
KRTAP10-9	386676	broad.mit.edu	37	chr21	46047816	46047816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgtgcaggcccgcctGctgcgtgcccgtctcctcct	11	19	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46047816	T	T	46047816	3	4	143	1	0	0	0	0	1	0	0	0	8587	1319	46	3	730	3	KRTAP10-9	21	46047816	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	6292539	46047816	2082079	698	123939											
PPIL2	23759	broad.mit.edu	37	chr22	22037690	22037690	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttctgaactagtgttcagaGaatctgagccaactgcagcc	9	10	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22037690	C	C	22037690	1	2	143	0	1	0	0	0	0	0	0	0	12428	957	33	4		4	PPIL2	22	22037690	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08		22037690	29266876	699	123940											
GNAZ	2781	broad.mit.edu	37	chr22	23438485	23438485	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccttcaagatggtggaCgtgggggggcagaggtcaga	17	8	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23438485	T	T	23438485	2	4	143	1	0	0	0	0	0	0	0	1	6578	535	19	4		4	GNAZ	22	23438485	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	1400795	23438485	27866081	700	123941											
PIWIL3	440822	broad.mit.edu	37	chr22	25115649	25115649	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagccagttcagaggtccAacattgttcaatgttgaata	9	7	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25115649	T	T	25115649	1	4	143	0	1	0	0	0	0	0	0	0	12054	145	5	5		5	PIWIL3	22	25115649	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	1677164	25115649	26188917	701	123942											
CRYBB3	1417	broad.mit.edu	37	chr22	25601130	25601130	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttccggcatctggagcctCcttgacctctgttctggata	9	13	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25601130	T	T	25601130	1	4	143	0	1	0	0	0	0	0	0	0	3944	870	30	4		4	CRYBB3	22	25601130	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	485481	25601130	25703436	702	123943											
CHEK2	11200	broad.mit.edu	37	chr22	29130657	29130657	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctgccatggggctgtgaaCaggcactgctgccatgagac	14	12	0	2	rs151218932	by1000genomes	TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29130657	G	G	29130657	3	3	143	1	0	0	0	0	1	0	0	0	3366	478	17	4	1767	4	CHEK2	22	29130657	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	3529527	29130657	22173909	703	123944											
RASD2	23551	broad.mit.edu	37	chr22	35943006	35943006	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaggaccagtacacaccCaccatcgaggacttccaccg	8	15	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35943006	A	A	35943006	2	1	143	1	0	0	0	0	0	0	0	1	13175	581	21	2		2	RASD2	22	35943006	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	6812349	35943006	15361560	704	123945											
RBM9	23543	broad.mit.edu	37	chr22	36236214	36236214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagagaggagaaaagaaaCatgccgaggaagcacaaatc	11	9	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36236214	A	A	36236214	1	1	143	0	1	0	0	0	0	0	0	0	13255	493	17	3		3	RBM9	22	36236214	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	293208	36236214	15068352	705	123946											
NCF4	4689	broad.mit.edu	37	chr22	37272127	37272127	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctattgaaagacctgctggAgctcacaaggtgaggggctg	14	9	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37272127	T	T	37272127	3	4	143	1	0	0	0	0	1	0	0	0	10313	304	11	5	1090	5	NCF4	22	37272127	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	1035913	37272127	14032439	706	123947											
CSF2RB	1439	broad.mit.edu	37	chr22	37322239	37322239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaggggctgggggccctGcccggggcttggtttcctgt	20	10	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37322239	T	T	37322239	1	4	143	0	1	0	0	0	0	0	0	0	3969	1334	46	3		3	CSF2RB	22	37322239	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	50112	37322239	13982327	707	123948											
TCF20	6942	broad.mit.edu	37	chr22	42607837	42607837	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cattaggcagcgcccagcctCctgggcactggggtcatggt	14	13	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42607837	T	T	42607837	3	4	143	1	0	0	0	0	1	0	0	0	15812	864	30	4	2445	4	TCF20	22	42607837	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	5285598	42607837	8696729	708	123949											
EFCAB6	64800	broad.mit.edu	37	chr22	44073894	44073894	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accctacagttctcttcaatCagatcaataaacatgctggt	5	11	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44073894	G	G	44073894	2	3	143	1	0	0	0	0	0	0	0	1	4979	813	29	4		4	EFCAB6	22	44073894	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	1466057	44073894	7230672	709	123950											
SMC1B	27127	broad.mit.edu	37	chr22	45755800	45755800	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgttccagagaagttTgaatacttacaacttctttt	6	7	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45755800	A	A	45755800	3	1	143	1	0	0	0	0	1	0	0	0	14896	1812	63	5	992	5	SMC1B	22	45755800	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	1681906	45755800	5548766	710	123951											
SFRS17A	8227	broad.mit.edu	37	chrX	1712956	1712956	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaccgggaggagatgacgGgccgcaacttccacaccttc	11	15	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1712956	A	A	1712956	3	1	143	1	0	0	0	0	1	0	0	0	14286	1232	43	4	603	4	SFRS17A	23	1712956	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08		1712956	153557604	711	123952											
FAM9A	171482	broad.mit.edu	37	chrX	8764317	8764317	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacaatcatacctttttagTtgtttttttttcaaagcacg	4	8	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8764317	C	C	8764317	2	2	143	1	0	0	0	0	0	0	0	1	5716	1722	60	5		5	FAM9A	23	8764317	Silent	SNP	T	TCGA-49-4514-01A-21D-1855-08	7051361	8764317	146506243	712	123953											
SHROOM2	357	broad.mit.edu	37	chrX	9862757	9862757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcagttgtttcccgcCcagggtccccggtgacagcg	13	14	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9862757	A	A	9862757	3	1	143	1	0	0	0	0	1	0	0	0	14407	623	22	2	823	2	SHROOM2	23	9862757	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	1098440	9862757	145407803	713	123954											
ARHGAP6	395	broad.mit.edu	37	chrX	11353980	11353980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggcctaggtaaaaggtGgcagcgatcccctagaggac	16	9	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11353980	T	T	11353980	1	4	143	0	1	0	0	0	0	0	0	0	889	1363	47	2		2	ARHGAP6	23	11353980	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1491223	11353980	143916580	714	123955											
FRMPD4	9758	broad.mit.edu	37	chrX	12724793	12724793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggaaaccaaatatgtagCaattttattcctaatgaata	5	6	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12724793	T	T	12724793	1	4	143	0	1	0	0	0	0	0	0	0	6119	725	25	4		4	FRMPD4	23	12724793	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1370813	12724793	142545767	715	123956											
TLR8	51311	broad.mit.edu	37	chrX	12940138	12940138	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcagtatttgaggctacgGcagcggatctgtaagagctc	12	9	2	2	rs148097000		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12940138	A	A	12940138	2	1	143	1	0	0	0	0	0	0	0	1	16080	1190	42	4		4	TLR8	23	12940138	Silent	SNP	G	TCGA-49-4514-01A-21D-1855-08	215345	12940138	142330422	716	123957											
TMSL3	7117	broad.mit.edu	37	chrX	12994289	12994289	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggctgcgggtcggagggcaGaagtgcagttcccagcccag	17	11	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12994289	A	A	12994289	1	1	143	0	1	0	0	0	0	0	0	0	16382	957	33	4		4	TMSL3	23	12994289	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	54151	12994289	142276271	717	123958											
ASB9	140462	broad.mit.edu	37	chrX	15262539	15262539	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgaaaaaactagtcaaactCtataaatccaacttgatttt	3	8	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15262539	A	A	15262539	1	1	143	0	1	0	0	0	0	0	0	0	1034	928	32	3		3	ASB9	23	15262539	3'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	2268250	15262539	140008021	718	123959											
PIR	8544	broad.mit.edu	37	chrX	15443970	15443971	+	Intron	INS	-	T	T													gcaaaacagcctcttgttggINSttttttcttttctttttttt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15443971	T	T	15443970	6	5	143	0	1	1	1	0	0	0	0	0	12039	1276	44	0		0	PIR	23	15443970	Intron	INS	-	TCGA-49-4514-01A-21D-1855-08	181431	15443970	139826590	719	123960											
AP1S2	8905	broad.mit.edu	37	chrX	15863649	15863649	+	Intron	DEL	A	-	-													agttcacagacctgaaaaggAaaaaaaaaagaaaaaagaaa							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15863649	-	-	15863649	6	5	143	0	1	1	0	1	0	0	0	0	739	261	9	0		0	AP1S2	23	15863649	Intron	DEL	A	TCGA-49-4514-01A-21D-1855-08	419679	15863649	139406911	720	123961											
SYAP1	94056	broad.mit.edu	37	chrX	16778405	16778405	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaggaacttcaagaatatGaagtggtgacagaatctgaa	11	5	2	5			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16778405	T	T	16778405	4	4	143	1	0	0	0	0	0	1	0	0	15544	1291	45	3	1016	3	SYAP1	23	16778405	Nonsense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	914756	16778405	138492155	721	123962											
GPR64	10149	broad.mit.edu	37	chrX	19087029	19087029	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatacctcaaaggtcattcCtcaaccaaggcaacctgtga	6	13	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19087029	G	G	19087029	1	3	143	0	1	0	0	0	0	0	0	0	6770	696	24	4		4	GPR64	23	19087029	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2308624	19087029	136183531	722	123963											
CNKSR2	22866	broad.mit.edu	37	chrX	21609204	21609204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggccgtggtgactgtgaGggctggctttggaaaaagaa	16	6	0	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21609204	T	T	21609204	3	4	143	1	0	0	0	0	1	0	0	0	3639	991	35	2	1780	2	CNKSR2	23	21609204	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	2522175	21609204	133661356	723	123964											
PHEX	5251	broad.mit.edu	37	chrX	22108476	22108476	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgggatgcagacgatttcAtcactcttgttaacatggta	10	8	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22108476	T	T	22108476	1	4	143	0	1	0	0	0	0	0	0	0	11914	232	8	5		5	PHEX	23	22108476	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	499272	22108476	133162084	724	123965											
GK	2710	broad.mit.edu	37	chrX	30683544	30683544	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggactttttctaccagtgaAcaagaacttcagttactgaa	7	8	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30683544	G	G	30683544	1	3	143	0	1	0	0	0	0	0	0	0	6484	58	2	5		5	GK	23	30683544	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	8575068	30683544	124587016	725	123966											
GK	2710	broad.mit.edu	37	chrX	30695576	30695576	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacaatgctgtgggtaagcTgtcatgcatggatgtcaaat	11	7	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30695576	A	A	30695576	1	1	143	0	1	0	0	0	0	0	0	0	6484	1595	55	5		5	GK	23	30695576	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	12032	30695576	124574984	726	123967											
GK	2710	broad.mit.edu	37	chrX	30746966	30746966	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcatagactttgattttaTttataagccacttgctgcat	5	7	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30746966	A	A	30746966	1	1	143	0	1	0	0	0	0	0	0	0	6484	1508	52	5		5	GK	23	30746966	3'UTR	SNP	T	TCGA-49-4514-01A-21D-1855-08	51390	30746966	124523594	727	123968											
FTHL17	53940	broad.mit.edu	37	chrX	31089831	31089831	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgatatcgtgaaggcagatGtggccaccgcgcaggttctg	14	10	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31089831	C	C	31089831	3	2	143	1	0	0	0	0	1	0	0	0	6143	1368	48	4	315	4	FTHL17	23	31089831	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	342865	31089831	124180729	728	123969											
DMD	1756	broad.mit.edu	37	chrX	32662524	32662524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagttttaaacttgtggcCcatttagatttatattccca	6	8	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32662524	A	A	32662524	1	1	143	0	1	0	0	0	0	0	0	0	4620	638	22	2		2	DMD	23	32662524	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	1572693	32662524	122608036	729	123970											
CYBB	1536	broad.mit.edu	37	chrX	37639333	37639333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcaacctctgccaccatGgggaactgggctgtgaatga	11	11	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37639333	T	T	37639333	3	4	143	1	0	0	0	0	1	0	0	0	4166	1348	47	2	5	2	CYBB	23	37639333	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	4976809	37639333	117631227	730	123971											
SYTL5	94122	broad.mit.edu	37	chrX	37985950	37985950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgagggtgtactcatGcttcgttccagcatgggaaa	11	10	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37985950	T	T	37985950	3	4	143	1	0	0	0	0	1	0	0	0	15605	1319	46	3	2292	3	SYTL5	23	37985950	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	346617	37985950	117284610	731	123972											
SRPX	8406	broad.mit.edu	37	chrX	38016192	38016192	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaaggaggtttcgggctGtgggtgtggacacaatgagg	19	4	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38016192	A	A	38016192	3	1	143	1	0	0	0	0	1	0	0	0	15282	1377	48	4	360	4	SRPX	23	38016192	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	30242	38016192	117254368	732	123973											
SLC9A7	84679	broad.mit.edu	37	chrX	46495108	46495108	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagcagaagaagggaacgtGagtgtgacagggacaacagg	17	6	0	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46495108	T	T	46495108	1	4	143	0	1	0	0	0	0	0	0	0	14833	1305	45	3		3	SLC9A7	23	46495108	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	8478916	46495108	108775452	733	123974											
RP2	6102	broad.mit.edu	37	chrX	46719490	46719490	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagctgaggatgctcaaaGggtttttcgggaaaaagcac	13	6	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46719490	C	C	46719490	3	2	143	1	0	0	0	0	1	0	0	0	13645	1000	35	4	846	4	RP2	23	46719490	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	224382	46719490	108551070	734	123975											
SSX5	6758	broad.mit.edu	37	chrX	48056800	48056800	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttttgaaagggaatctaaGtgtggtgtgcacaattacca	11	5	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48056800	T	T	48056800	1	4	143	0	1	0	0	0	0	0	0	0	15326	1044	36	3		3	SSX5	23	48056800	5'Flank	SNP	G	TCGA-49-4514-01A-21D-1855-08	1337310	48056800	107213760	735	123976											
PORCN	64840	broad.mit.edu	37	chrX	48372655	48372656	+	Missense_Mutation	DNP	CT	AA	AA													cgagcctacgagagtgctgtCtccttccacttcagcaacta							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	48372656	AA	AA	48372655	3	1	143	1	0	0	0	0	1	0	0	0	12353	900	32	3	777	3	PORCN	23	48372655	Missense_Mutation	DNP	CT	TCGA-49-4514-01A-21D-1855-08	315855	48372655	106897905	736	123977											
SUV39H1	6839	broad.mit.edu	37	chrX	48558965	48558965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcggcttcgagccgggCtgcccatctacgagtgcaac	14	13	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48558965	A	A	48558965	3	1	143	1	0	0	0	0	1	0	0	0	15530	796	28	3	659	3	SUV39H1	23	48558965	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	186310	48558965	106711595	737	123978											
TFE3	7030	broad.mit.edu	37	chrX	48896717	48896717	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccaaccacagagatggcaGgagaggcaggtgcaggactg	16	10	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48896717	A	A	48896717	3	1	143	1	0	0	0	0	1	0	0	0	15923	1000	35	4	1310	4	TFE3	23	48896717	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	337752	48896717	106373843	738	123979											
WDR45	11152	broad.mit.edu	37	chrX	48932786	48932786	+	Intron	SNP	C	A	A													cccccaaccaaggggctgttCccactcaccaatgacagagt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48932786	A	A	48932786	1	1	143	0	1	0	0	0	0	0	0	0	17424	870	30	3		3	WDR45	23	48932786	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	36069	48932786	106337774	739	123980	539	2									
WDR45	11152	broad.mit.edu	37	chrX	48932788	48932788	+	Intron	SNP	C	A	A													cccaaccaaggggctgttccCactcaccaatgacagagttg							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48932788	A	A	48932788	1	1	143	0	1	0	0	0	0	0	0	0	17424	609	21	2		2	WDR45	23	48932788	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2	48932788	106337772	740	123981	539	2									
MAGIX	79917	broad.mit.edu	37	chrX	49022353	49022353	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctttgggttctcctgtcCatcctcagccaaaggcctgg	10	14	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49022353	T	T	49022353	1	4	143	0	1	0	0	0	0	0	0	0	9285	609	21	4		4	MAGIX	23	49022353	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	89565	49022353	106248207	741	123982											
CACNA1F	778	broad.mit.edu	37	chrX	49079432	49079432	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggaacgtgtcaaaggtgcTtcgcttggtgtgggtctggt	18	6	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49079432	A	A	49079432	3	1	143	1	0	0	0	0	1	0	0	0	2569	1609	56	5	3995	5	CACNA1F	23	49079432	Missense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	57079	49079432	106191128	742	123983											
GAGE12J	729396	broad.mit.edu	37	chrX	49208488	49208488	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatggcatcttatgaaggAaacattgattctggaggatt	11	4	2	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49208488	G	G	49208488	1	3	143	0	1	0	0	0	0	0	0	0	6249	261	9	5		5	GAGE12J	23	49208488	Intron	SNP	A	TCGA-49-4514-01A-21D-1855-08	129056	49208488	106062072	743	123984											
HUWE1	10075	broad.mit.edu	37	chrX	53571852	53571853	+	Intron	DNP	AG	TA	TA													aaatcttccaagtaggaagtAgaaaaaaatgggtcaagtgt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	53571853	TA	TA	53571852	1	4	143	0	1	0	0	0	0	0	0	0	7531	435	15	5		5	HUWE1	23	53571852	Intron	DNP	AG	TCGA-49-4514-01A-21D-1855-08	4363364	53571852	101698708	744	123985											
HUWE1	10075	broad.mit.edu	37	chrX	53652067	53652067	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatagtatgaaaagaaccaaTctttgagagagtaaaatatc	7	4	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53652067	A	A	53652067	1	1	143	0	1	0	0	0	0	0	0	0	7531	1450	50	5		5	HUWE1	23	53652067	Intron	SNP	T	TCGA-49-4514-01A-21D-1855-08	80215	53652067	101618493	745	123986											
ITIH5L	347365	broad.mit.edu	37	chrX	54780208	54780208	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccccgtccactgcaaggcaGaagatacaactctaaagtta	7	12	1	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54780208	T	T	54780208	1	4	143	0	1	0	0	0	0	0	0	0	7978	957	33	3		3	ITIH5L	23	54780208	Intron	SNP	G	TCGA-49-4514-01A-21D-1855-08	1128141	54780208	100490352	746	123987											
MAGED2	10916	broad.mit.edu	37	chrX	54836552	54836552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggctgcaccctctcaggCcccagcagatgaacctgagc	11	15	1	4			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54836552	A	A	54836552	3	1	143	1	0	0	0	0	1	0	0	0	9276	739	26	3	449	3	MAGED2	23	54836552	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	56344	54836552	100434008	747	123988											
PJA1	64219	broad.mit.edu	37	chrX	68382067	68382067	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggtgcgtcgtcgtctcgGcaccttttctggtttcactt	10	12	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68382067	A	A	68382067	3	1	143	1	0	0	0	0	1	0	0	0	12056	1203	42	4	920	4	PJA1	23	68382067	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	13545515	68382067	86888493	748	123989											
KIF4A	24137	broad.mit.edu	37	chrX	69516870	69516870	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataatgcaacggtcctggcCtatgggcagactggctctgg	13	10	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69516870	A	A	69516870	2	1	143	1	0	0	0	0	0	0	0	1	8373	668	24	2		2	KIF4A	23	69516870	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	1134803	69516870	85753690	749	123990											
TEX11	56159	broad.mit.edu	37	chrX	69898725	69898725	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgattctgctgtcagttgtcTtcctgtttggtgagctgaaa	11	7	3	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69898725	A	A	69898725	4	1	143	1	0	0	0	0	0	1	0	0	15896	1617	56	5	1670	5	TEX11	23	69898725	Nonsense_Mutation	SNP	T	TCGA-49-4514-01A-21D-1855-08	381855	69898725	85371835	750	123991											
ATRX	546	broad.mit.edu	37	chrX	76918761	76918761	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcccaggctggtcttaaactCctgggctcaagcaatctgcc	10	14	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76918761	T	T	76918761	1	4	143	0	1	0	0	0	0	0	0	0	1212	870	30	4		4	ATRX	23	76918761	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	7020036	76918761	78351799	751	123992											
ATP7A	538	broad.mit.edu	37	chrX	77218047	77218047	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactgttaacaccagcccttCcctgtggctgaccctgaggt	9	15	0	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77218047	A	A	77218047	1	1	143	0	1	0	0	0	0	0	0	0	1194	870	30	3		3	ATP7A	23	77218047	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	299286	77218047	78052513	752	123993											
PGK1	5230	broad.mit.edu	37	chrX	77380808	77380809	+	Intron	DNP	GG	TT	TT													tctcttttccctttttacctGgctttcattcaacaggtggt							TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	77380809	TT	TT	77380808	1	4	143	0	1	0	0	0	0	0	0	0	11885	1363	47	2		2	PGK1	23	77380808	Intron	DNP	GG	TCGA-49-4514-01A-21D-1855-08	162761	77380808	77889752	753	123994											
TBX22	50945	broad.mit.edu	37	chrX	79286509	79286509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatctagactgataagtGgttccaaccatcttaaagtg	8	9	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79286509	T	T	79286509	3	4	143	1	0	0	0	0	1	0	0	0	15780	1348	47	2	1492	2	TBX22	23	79286509	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1905701	79286509	75984051	754	123995											
BRWD3	254065	broad.mit.edu	37	chrX	79937526	79937526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggagagctagtcctggCatgagatactgaggtattct	13	6	1	3			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79937526	A	A	79937526	3	1	143	1	0	0	0	0	1	0	0	0	1535	710	25	3	955	3	BRWD3	23	79937526	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	651017	79937526	75333034	755	123996											
PCDH11X	27328	broad.mit.edu	37	chrX	91131800	91131800	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcaaaacatttttggcctCgatgtcattgaaacaccaga	7	9	2	2			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91131800	T	T	91131800	2	4	143	1	0	0	0	0	0	0	0	1	11602	871	31	4		4	PCDH11X	23	91131800	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	11194274	91131800	64138760	756	123997											
RPA4	29935	broad.mit.edu	37	chrX	96139496	96139496	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctactgtgtttgaccctGtgttcaaggttaggggaatt	12	7	2	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96139496	A	A	96139496	3	1	143	1	0	0	0	0	1	0	0	0	13650	1377	48	4	189	4	RPA4	23	96139496	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	5007696	96139496	59131064	757	123998											
SRPX2	27286	broad.mit.edu	37	chrX	99921880	99921880	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgccaggggacaccctcccGggtctgtcagtccagccgcc	12	18	2	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99921880	A	A	99921880	3	1	143	1	0	0	0	0	1	0	0	0	15283	1116	39	4	937	4	SRPX2	23	99921880	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	3782384	99921880	55348680	758	123999											
NRK	203447	broad.mit.edu	37	chrX	105152952	105152952	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcacctcaacgactacAaggggcagctcgggtgttca	12	12	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105152952	C	C	105152952	3	2	143	1	0	0	0	0	1	0	0	0	10750	130	5	5	1369	5	NRK	23	105152952	Missense_Mutation	SNP	A	TCGA-49-4514-01A-21D-1855-08	5231072	105152952	50117608	759	124000											
CLDN2	9075	broad.mit.edu	37	chrX	106171458	106171458	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctactgagaggtctgcCatggcctctcttggcctcca	10	14	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106171458	T	T	106171458	1	4	143	0	1	0	0	0	0	0	0	0	3512	609	21	4		4	CLDN2	23	106171458	5'UTR	SNP	C	TCGA-49-4514-01A-21D-1855-08	1018506	106171458	49099102	760	124001											
GPC4	2239	broad.mit.edu	37	chrX	132437228	132437228	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccacgtcgttcccattgtaTgcattcttcatcttgctggt	7	12	3	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132437228	A	A	132437228	2	1	143	1	0	0	0	0	0	0	0	1	6665	1451	51	5		5	GPC4	23	132437228	Silent	SNP	T	TCGA-49-4514-01A-21D-1855-08	26265770	132437228	22833332	761	124002											
MCF2	4168	broad.mit.edu	37	chrX	138728982	138728982	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtaagtaagtacttttgCtattacttcctctggtatac	7	8	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138728982	A	A	138728982	3	1	143	1	0	0	0	0	1	0	0	0	9471	797	28	3	3090	3	MCF2	23	138728982	Missense_Mutation	SNP	C	TCGA-49-4514-01A-21D-1855-08	6291754	138728982	16541578	762	124003											
SPANXE	171489	broad.mit.edu	37	chrX	140786482	140786482	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttcacttcagaacctaaCagtcttaccatctcgttggc	6	14	4	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140786482	G	G	140786482	1	3	143	0	1	0	0	0	0	0	0	0	15105	493	17	4		4	SPANXE	23	140786482	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	2057500	140786482	14484078	763	124004											
PASD1	139135	broad.mit.edu	37	chrX	150780226	150780226	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcttggacatttaccaGtaagttctttctacttttgg	6	9	4	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150780226	T	T	150780226	5	4	143	1	0	0	0	0	0	0	1	0	11565	1043	36	3	218	3	PASD1	23	150780226	Splice_Site	SNP	G	TCGA-49-4514-01A-21D-1855-08	9993744	150780226	4490334	764	124005											
MAGEA6	4105	broad.mit.edu	37	chrX	151870189	151870189	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcaccatatggtaaagatCagtggaggacctcgcatttc	10	10	1	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151870189	T	T	151870189	2	4	143	1	0	0	0	0	0	0	0	1	9260	816	29	4		4	MAGEA6	23	151870189	Silent	SNP	C	TCGA-49-4514-01A-21D-1855-08	1089963	151870189	3400371	765	124006											
ZNF185	7739	broad.mit.edu	37	chrX	152137913	152137913	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaccaccgggttattgttCttcatctcacaggacaactg	8	12	3	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152137913	G	G	152137913	1	3	143	0	1	0	0	0	0	0	0	0	17878	928	32	4		4	ZNF185	23	152137913	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	267724	152137913	3132647	766	124007											
ZNF275	10838	broad.mit.edu	37	chrX	152613093	152613093	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccggcggatccacacggGcgagaagccctacgcctgcg	14	16	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152613093	A	A	152613093	3	1	143	1	0	0	0	0	1	0	0	0	17936	1203	42	4	960	4	ZNF275	23	152613093	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	475180	152613093	2657467	767	124008											
MPP1	4354	broad.mit.edu	37	chrX	154018236	154018236	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgccacccacctgtagtGcaggaagacggctttgctgg	14	11	0	1			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154018236	A	A	154018236	3	1	143	1	0	0	0	0	1	0	0	0	9827	1319	46	4	959	4	MPP1	23	154018236	Missense_Mutation	SNP	G	TCGA-49-4514-01A-21D-1855-08	1405143	154018236	1252324	768	124009											
CLIC2	1193	broad.mit.edu	37	chrX	154522221	154522221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtaggaagttttgccaaCagggcgaacaaaggtcagtt	13	6	1	0			TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154522221	A	A	154522221	1	1	143	0	1	0	0	0	0	0	0	0	3558	493	17	3		3	CLIC2	23	154522221	Intron	SNP	C	TCGA-49-4514-01A-21D-1855-08	503985	154522221	748339	769	124010											
PRKCZ	5590	broad.mit.edu	37	chr1	2103681	2103681	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgcatgtgcgtctcggggCgcctgtcccgcggggtagtg	17	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2103681	G	G	2103681	1	3	144	0	1	0	0	0	0	0	0	0	12623	783	27	4		4	PRKCZ	1	2103681	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08		2103681	247146940	1	124011											
ESPN	83715	broad.mit.edu	37	chr1	6488379	6488379	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttgcatcatggcggtgggGaccccaccgcggccacagac	13	15	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6488379	A	A	6488379	3	1	144	1	0	0	0	0	1	0	0	0	5296	1174	41	4	394	4	ESPN	1	6488379	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	4384698	6488379	242762242	2	124012											
PRAMEF11	440560	broad.mit.edu	37	chr1	12887729	12887729	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agactgagaatttaagaactCatttctgaacttaaactcca	5	8	2	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12887729	G	G	12887729	1	3	144	0	1	0	0	0	0	0	0	0	12528	841	29	4		4	PRAMEF11	1	12887729	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	6399350	12887729	236362892	3	124013											
PRAMEF17	391004	broad.mit.edu	37	chr1	13718412	13718412	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctctccccaggtgcctcaAgaaccccttgggaaccttta	8	15	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13718412	G	G	13718412	3	3	144	1	0	0	0	0	1	0	0	0	12534	72	3	5	885	5	PRAMEF17	1	13718412	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	830683	13718412	235532209	4	124014											
PRDM2	7799	broad.mit.edu	37	chr1	14108929	14108929	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccccacccaagtcccacttCcctcctcatccttcaggtcc	4	22	2	0	rs144820187	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14108929	T	T	14108929	3	4	144	1	0	0	0	0	1	0	0	0	12564	855	30	4	4665	4	PRDM2	1	14108929	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	390517	14108929	235141692	5	124015											
NBPF1	55672	broad.mit.edu	37	chr1	16891356	16891356	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttcttccccttctccttCttttcttcgttgatcttctt	2	14	6	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16891356	G	G	16891356	1	3	144	0	1	0	0	0	0	0	0	0	10286	913	32	4		4	NBPF1	1	16891356	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2782427	16891356	232359265	6	124016											
UBR4	23352	broad.mit.edu	37	chr1	19499631	19499631	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagctgtggcaatgggctaTggtagaaaccaagttctatc	11	7	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19499631	A	A	19499631	1	1	144	0	1	0	0	0	0	0	0	0	17030	1479	51	5		5	UBR4	1	19499631	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	2608275	19499631	229750990	7	124017											
CELA3B	23436	broad.mit.edu	37	chr1	22310365	22310365	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccacagggacagtggcaGaaagacagggcctgggggct	18	9	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22310365	A	A	22310365	1	1	144	0	1	0	0	0	0	0	0	0	3244	957	33	4		4	CELA3B	1	22310365	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2810734	22310365	226940256	8	124018											
CELA3A	10136	broad.mit.edu	37	chr1	22333549	22333549	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccacagagacagtggcaGaaagacagggcctgggggct	17	9	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22333549	A	A	22333549	1	1	144	0	1	0	0	0	0	0	0	0	3243	957	33	4		4	CELA3A	1	22333549	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	23184	22333549	226917072	9	124019											
LUZP1	7798	broad.mit.edu	37	chr1	23418835	23418835	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgacacctcaaggcttcatgCggactgctgtcttccatcac	8	15	4	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23418835	T	T	23418835	2	4	144	1	0	0	0	0	0	0	0	1	9173	755	27	4		4	LUZP1	1	23418835	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1085286	23418835	225831786	10	124020											
FUCA1	2517	broad.mit.edu	37	chr1	24194554	24194554	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccagtgccaccagaaccactCgctgccccaggcgggcaccg	11	19	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24194554	G	G	24194554	3	3	144	1	0	0	0	0	1	0	0	0	6154	893	31	4	1209	4	FUCA1	1	24194554	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	775719	24194554	225056067	11	124021											
C1orf63	57035	broad.mit.edu	37	chr1	25573111	25573111	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagagcgcgacctgctacggGaccgggaccggtaccgcgaa	16	13	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25573111	C	C	25573111	3	2	144	1	0	0	0	0	1	0	0	0	2075	1174	41	4	544	4	C1orf63	1	25573111	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1378557	25573111	223677510	12	124022											
GPN2	54707	broad.mit.edu	37	chr1	27215438	27215438	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagctgctgccctgctcttCgcctggaacagaagctctta	9	15	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27215438	T	T	27215438	1	4	144	0	1	0	0	0	0	0	0	0	6683	899	31	4		4	GPN2	1	27215438	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1642327	27215438	222035183	13	124023											
EYA3	2140	broad.mit.edu	37	chr1	28384528	28384528	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgctctggtaaatcttgctCttcttccatgaggaccaata	7	10	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28384528	G	G	28384528	3	3	144	1	0	0	0	0	1	0	0	0	5373	922	32	4	1779	4	EYA3	1	28384528	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1169090	28384528	220866093	14	124024											
YTHDF2	51441	broad.mit.edu	37	chr1	29069903	29069903	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtaatggagtaggacagtCtcaggctggttctggatcta	14	6	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29069903	T	T	29069903	3	4	144	1	0	0	0	0	1	0	0	0	17626	913	32	4	1135	4	YTHDF2	1	29069903	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	685375	29069903	220180718	15	124025											
COL16A1	1307	broad.mit.edu	37	chr1	32167811	32167811	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatcccggtccaaagaggtCagctacagccacagcacctg	9	15	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32167811	T	T	32167811	1	4	144	0	1	0	0	0	0	0	0	0	3705	841	29	4		4	COL16A1	1	32167811	5'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	3097908	32167811	217082810	16	124026											
DCDC2B	149069	broad.mit.edu	37	chr1	32675076	32675077	+	Intron	INS	-	G	G													tacttactgaactctatgtaINSgggggggtggttttgcctcc							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32675077	G	G	32675076	6	5	144	0	1	1	1	0	0	0	0	0	4319	435	15	0		0	DCDC2B	1	32675076	Intron	INS	-	TCGA-49-6742-01A-11D-1855-08	507265	32675076	216575545	17	124027											
TRIM62	55223	broad.mit.edu	37	chr1	33623979	33623979	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcccttgagcctggaaggaGagcaggaaagggggctgcac	16	9	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33623979	A	A	33623979	1	1	144	0	1	0	0	0	0	0	0	0	16662	957	33	4		4	TRIM62	1	33623979	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	948903	33623979	215626642	18	124028											
CSMD2	114784	broad.mit.edu	37	chr1	34003033	34003033	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctgctccagatgacctctCacctatgcagctgggctggg	11	15	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34003033	T	T	34003033	1	4	144	0	1	0	0	0	0	0	0	0	3979	841	29	4		4	CSMD2	1	34003033	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	379054	34003033	215247588	19	124029											
MACF1	23499	broad.mit.edu	37	chr1	39751235	39751235	+	Intron	DEL	A	-	-													tctgtcctagtgagtggggcAatggaagttttcccactgtt							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39751235	-	-	39751235	6	5	144	0	1	1	0	1	0	0	0	0	9232	145	5	0		0	MACF1	1	39751235	Intron	DEL	A	TCGA-49-6742-01A-11D-1855-08	5748202	39751235	209499386	20	124030											
MYCL1	4610	broad.mit.edu	37	chr1	40363105	40363105	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgccggcatcggagctgtCttttctctgtagccatcctc	10	14	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40363105	G	G	40363105	3	3	144	1	0	0	0	0	1	0	0	0	10114	913	32	4	64	4	MYCL1	1	40363105	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	611870	40363105	208887516	21	124031											
ZNF642	339559	broad.mit.edu	37	chr1	40954614	40954614	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttttgttgatcagatttgGagatcagaggatctccaaac	10	6	3	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40954614	A	A	40954614	1	1	144	0	1	0	0	0	0	0	0	0	18185	1189	41	4		4	ZNF642	1	40954614	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	591509	40954614	208296007	22	124032											
EIF2B3	8891	broad.mit.edu	37	chr1	45347297	45347297	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgacctaaggacttcagCtcctttttctttagatcctc	5	12	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45347297	T	T	45347297	2	4	144	1	0	0	0	0	0	0	0	1	5042	796	28	4		4	EIF2B3	1	45347297	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	4392683	45347297	203903324	23	124033											
LRRC41	10489	broad.mit.edu	37	chr1	46745979	46745979	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactctggataggaggcagaGaccatggaccatggacctta	12	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46745979	A	A	46745979	1	1	144	0	1	0	0	0	0	0	0	0	9086	957	33	4		4	LRRC41	1	46745979	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1398682	46745979	202504642	24	124034											
NRD1	4898	broad.mit.edu	37	chr1	52260342	52260342	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actataagaagctaggccttCtaacttttcaattgccttgt	6	9	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52260342	G	G	52260342	1	3	144	0	1	0	0	0	0	0	0	0	10740	928	32	4		4	NRD1	1	52260342	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	5514363	52260342	196990279	25	124035											
LRP8	7804	broad.mit.edu	37	chr1	53792512	53792512	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccaccgttccttttctctCcccgggtctgagctccctgg	8	19	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53792512	T	T	53792512	1	4	144	0	1	0	0	0	0	0	0	0	9050	870	30	4		4	LRP8	1	53792512	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1532170	53792512	195458109	26	124036											
MRPL37	51253	broad.mit.edu	37	chr1	54666245	54666246	+	Frame_Shift_Ins	INS	-	T	T													tgctatatctttcaccaccgINSttgccgccttctcgagggtg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54666246	T	T	54666245	7	5	144	1	0	1	1	0	0	0	0	0	9894	1145	40	0	331	0	MRPL37	1	54666245	Frame_Shift_Ins	INS	-	TCGA-49-6742-01A-11D-1855-08	873733	54666245	194584376	27	124037											
PRKAA2	5563	broad.mit.edu	37	chr1	57159640	57159640	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catggtagaaatggattattCatttatttttccactgttaa	6	5	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57159640	G	G	57159640	1	3	144	0	1	0	0	0	0	0	0	0	12600	841	29	4		4	PRKAA2	1	57159640	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2493395	57159640	192090981	28	124038											
MYSM1	114803	broad.mit.edu	37	chr1	59139252	59139252	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaaagttacctcaaacGtttgtccttctaagtccttt	6	10	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59139252	A	A	59139252	3	1	144	1	0	0	0	0	1	0	0	0	10195	1145	40	4	961	4	MYSM1	1	59139252	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1979612	59139252	190111369	29	124039											
DOCK7	85440	broad.mit.edu	37	chr1	63113915	63113915	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcatcaggaagtgaatttttCaagtcaaagatactacaggc	9	7	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63113915	G	G	63113915	3	3	144	1	0	0	0	0	1	0	0	0	4732	825	29	4	5911	4	DOCK7	1	63113915	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3974663	63113915	186136706	30	124040											
RAVER2	55225	broad.mit.edu	37	chr1	65270553	65270553	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcattttttcttttaaaatCagttcatttcttttctagaa	2	6	6	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65270553	G	G	65270553	1	3	144	0	1	0	0	0	0	0	0	0	13203	841	29	4		4	RAVER2	1	65270553	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2156638	65270553	183980068	31	124041											
LRRC40	55631	broad.mit.edu	37	chr1	70611554	70611554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattaatatggctgctcgagGaactcggaatggatttccat	10	8	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70611554	T	T	70611554	3	4	144	1	0	0	0	0	1	0	0	0	9085	1174	41	3	74	3	LRRC40	1	70611554	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	5341001	70611554	178639067	32	124042											
FAM73A	374986	broad.mit.edu	37	chr1	78313285	78313285	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagaaaaaactgcaagagaGagctgaagaagaaagaaaaa	10	3	0	7			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78313285	C	C	78313285	1	2	144	0	1	0	0	0	0	0	0	0	5668	957	33	4		4	FAM73A	1	78313285	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	7701731	78313285	170937336	33	124043											
CLCA4	22802	broad.mit.edu	37	chr1	87031004	87031004	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagagtttataagtgtcaagGaggcagctgtcttagtagag	13	4	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87031004	A	A	87031004	3	1	144	1	0	0	0	0	1	0	0	0	3490	1174	41	4	623	4	CLCA4	1	87031004	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	8717719	87031004	162219617	34	124044											
RPL5	6125	broad.mit.edu	37	chr1	93306114	93306114	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctttgtttcagatggagGagatgtataagaaagctcat	10	5	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93306114	T	T	93306114	4	4	144	1	0	0	0	0	0	1	0	0	13708	1175	41	3	738	3	RPL5	1	93306114	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	6275110	93306114	155944507	35	124045											
ABCA4	24	broad.mit.edu	37	chr1	94508894	94508894	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatccagctctgagcacctGataggtcctgagcctcttca	8	15	3	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94508894	C	C	94508894	4	2	144	1	0	0	0	0	0	1	0	0	34	1294	45	4	3753	4	ABCA4	1	94508894	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1202780	94508894	154741727	36	124046											
DPYD	1806	broad.mit.edu	37	chr1	98058679	98058679	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatttttaaacttgaatttgAcaatttcaacattctagcga	4	6	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98058679	T	T	98058679	1	4	144	0	1	0	0	0	0	0	0	0	4785	290	10	5		5	DPYD	1	98058679	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	3549785	98058679	151191942	37	124047											
RTCD1	8634	broad.mit.edu	37	chr1	100757055	100757055	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgggatgacaaatccaaatCtatagagtatttgcctctta	7	7	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100757055	T	T	100757055	2	4	144	1	0	0	0	0	0	0	0	1	13829	912	32	4		4	RTCD1	1	100757055	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	2698376	100757055	148493566	38	124048											
VCAM1	7412	broad.mit.edu	37	chr1	101186146	101186146	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccccatttttctcttggaGaacccagatagatagtccac	7	12	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101186146	A	A	101186146	3	1	144	1	0	0	0	0	1	0	0	0	17264	942	33	4	185	4	VCAM1	1	101186146	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	429091	101186146	148064475	39	124049											
COL11A1	1301	broad.mit.edu	37	chr1	103444491	103444491	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcagatgagaacaaaagatGaacccaaactaatgccagac	8	9	0	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103444491	C	C	103444491	1	2	144	0	1	0	0	0	0	0	0	0	3699	1305	45	4		4	COL11A1	1	103444491	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2258345	103444491	145806130	40	124050											
COL11A1	1301	broad.mit.edu	37	chr1	103462666	103462666	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctccagactggccttcTttcccaggatgaccctatat	6	13	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103462666	C	C	103462666	2	2	144	1	0	0	0	0	0	0	0	1	3699	1606	56	5		5	COL11A1	1	103462666	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	18175	103462666	145787955	41	124051											
VAV3	10451	broad.mit.edu	37	chr1	108160383	108160383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttatatccagtcctgagCattaacttactgtggatcag	9	8	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108160383	A	A	108160383	1	1	144	0	1	0	0	0	0	0	0	0	17260	725	25	3		3	VAV3	1	108160383	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	4697717	108160383	141090238	42	124052											
PSMA5	5686	broad.mit.edu	37	chr1	109964558	109964558	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcacgcccctataatttAaaaaaaaattattaattata	1	6	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109964558	T	T	109964558	1	4	144	0	1	0	0	0	0	0	0	0	12776	377	13	5		5	PSMA5	1	109964558	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	1804175	109964558	139286063	43	124053											
AMPD2	271	broad.mit.edu	37	chr1	110172893	110172893	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtactacctggcccagatCggcatcgccatgtctccgct	9	16	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110172893	T	T	110172893	2	4	144	1	0	0	0	0	0	0	0	1	586	874	31	4		4	AMPD2	1	110172893	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	208335	110172893	139077728	44	124054											
ADORA3	140	broad.mit.edu	37	chr1	112033162	112033162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttattttcccatcccaCtccttagatggttcgagtta	5	12	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112033162	A	A	112033162	1	1	144	0	1	0	0	0	0	0	0	0	329	580	20	3		3	ADORA3	1	112033162	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1860269	112033162	137217459	45	124055											
ST7L	54879	broad.mit.edu	37	chr1	113124969	113124970	+	Intron	INS	-	T	T													agtttctggaggaataaatgINStaatagtcccatcatcaatt							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113124970	T	T	113124969	6	5	144	0	1	1	1	0	0	0	0	0	15348	1392	48	0		0	ST7L	1	113124969	Intron	INS	-	TCGA-49-6742-01A-11D-1855-08	1091807	113124969	136125652	46	124056											
SYCP1	6847	broad.mit.edu	37	chr1	115456644	115456644	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaacaaatagaaaatcttCaagaaacagaaacccaatta	4	7	2	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115456644	G	G	115456644	3	3	144	1	0	0	0	0	1	0	0	0	15550	827	29	4	1770	4	SYCP1	1	115456644	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2331675	115456644	133793977	47	124057											
TSPAN2	10100	broad.mit.edu	37	chr1	115600088	115600088	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagatcccatccgagattcTaccttcaatggcttcctaag	7	13	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115600088	A	A	115600088	1	1	144	0	1	0	0	0	0	0	0	0	16769	1537	53	5		5	TSPAN2	1	115600088	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	143444	115600088	133650533	48	124058											
HSD3B2	3284	broad.mit.edu	37	chr1	119964263	119964263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttatttttgtgtttttcCtacggctgtatcatgaccca	6	8	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119964263	A	A	119964263	1	1	144	0	1	0	0	0	0	0	0	0	7458	696	24	2		2	HSD3B2	1	119964263	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	4364175	119964263	129286358	49	124059											
NBPF10	100132406	broad.mit.edu	37	chr1	145302756	145302756	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgctcattgaatgagcatctCcaggccctcctcactccgta	7	16	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145302756	T	T	145302756	2	4	144	1	0	0	0	0	0	0	0	1	10287	842	30	4		4	NBPF10	1	145302756	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	25338493	145302756	103947865	50	124060											
NBPF10	100132406	broad.mit.edu	37	chr1	145312046	145312046	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagtggccgttactgagctGagagatgtcattgccacagg	13	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145312046	A	A	145312046	1	1	144	0	1	0	0	0	0	0	0	0	10287	1305	45	4		4	NBPF10	1	145312046	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	9290	145312046	103938575	51	124061											
POLR3C	10623	broad.mit.edu	37	chr1	145598609	145598609	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatagccaacaggtagggatCtgaagatctatggagcaaag	12	6	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145598609	T	T	145598609	3	4	144	1	0	0	0	0	1	0	0	0	12325	913	32	4	752	4	POLR3C	1	145598609	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	286563	145598609	103652012	52	124062											
SV2A	9900	broad.mit.edu	37	chr1	149877635	149877635	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatgagcctggccacagtGaaacccacccacagcccacc	7	18	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149877635	A	A	149877635	1	1	144	0	1	0	0	0	0	0	0	0	15535	1305	45	4		4	SV2A	1	149877635	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4279026	149877635	99372986	53	124063											
MTMR11	10903	broad.mit.edu	37	chr1	149901597	149901597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccaggcagcagcagccctGgaggtaaagggcaagctccc	13	14	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149901597	A	A	149901597	3	1	144	1	0	0	0	0	1	0	0	0	10034	1348	47	4	317	4	MTMR11	1	149901597	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	23962	149901597	99349024	54	124064											
MLLT11	10962	broad.mit.edu	37	chr1	151040066	151040066	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccattttaatcttgttctCtccctactgtgttggtggtg	8	10	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151040066	G	G	151040066	1	3	144	0	1	0	0	0	0	0	0	0	9720	928	32	4		4	MLLT11	1	151040066	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	1138469	151040066	98210555	55	124065											
RFX5	5993	broad.mit.edu	37	chr1	151314991	151314991	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctccagctgagttgccttCccctcctgagccccatgtct	7	19	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151314991	T	T	151314991	3	4	144	1	0	0	0	0	1	0	0	0	13374	864	30	4	332	4	RFX5	1	151314991	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	274925	151314991	97935630	56	124066											
CD1D	912	broad.mit.edu	37	chr1	158153637	158153637	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaaataagaagcacctGgtaccctcacacatgcctag	10	11	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158153637	C	C	158153637	1	2	144	0	1	0	0	0	0	0	0	0	3007	1363	47	4		4	CD1D	1	158153637	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	6838646	158153637	91096984	57	124067											
CD1A	909	broad.mit.edu	37	chr1	158225933	158225933	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgccatatccagtggctggGaatatggccaagcatttctg	11	9	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158225933	T	T	158225933	2	4	144	1	0	0	0	0	0	0	0	1	3004	1161	41	3		3	CD1A	1	158225933	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	72296	158225933	91024688	58	124068											
OR10R2	343406	broad.mit.edu	37	chr1	158450025	158450025	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttcaactgttgtgctcttCaaatgttcttcttccttggt	6	11	5	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450025	T	T	158450025	4	4	144	1	0	0	0	0	0	1	0	0	11011	827	29	4	360	4	OR10R2	1	158450025	Nonsense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	224092	158450025	90800596	59	124069											
SPTA1	6708	broad.mit.edu	37	chr1	158588932	158588932	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctctcagagtctctcctcTtcccttcaaacatgtatttc	4	14	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158588932	G	G	158588932	1	3	144	0	1	0	0	0	0	0	0	0	15234	1624	56	5		5	SPTA1	1	158588932	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	138907	158588932	90661689	60	124070											
SPTA1	6708	broad.mit.edu	37	chr1	158596652	158596652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagcctctaccacatcaGccttccagttgaattcctga	5	15	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158596652	T	T	158596652	3	4	144	1	0	0	0	0	1	0	0	0	15234	971	34	3	1497	3	SPTA1	1	158596652	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	7720	158596652	90653969	61	124071											
SPTA1	6708	broad.mit.edu	37	chr1	158637900	158637901	+	Intron	DNP	GG	TT	TT													aaccattacctgaagaatgaGggacagaaattttgagaata							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	158637901	TT	TT	158637900	1	4	144	0	1	0	0	0	0	0	0	0	15234	1015	35	2		2	SPTA1	1	158637900	Intron	DNP	GG	TCGA-49-6742-01A-11D-1855-08	41248	158637900	90612721	62	124072											
MNDA	4332	broad.mit.edu	37	chr1	158815572	158815572	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtcttcgacatcaacTtgaaagagaaatttgtaagg	9	5	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158815572	C	C	158815572	2	2	144	1	0	0	0	0	0	0	0	1	9770	1606	56	5		5	MNDA	1	158815572	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	177672	158815572	90435049	63	124073											
IFI16	3428	broad.mit.edu	37	chr1	159019381	159019381	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaccaagcagcagtttcTtaaccacggtacaagttccc	6	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159019381	G	G	159019381	3	3	144	1	0	0	0	0	1	0	0	0	7581	1606	56	5	1515	5	IFI16	1	159019381	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	203809	159019381	90231240	64	124074											
FCER1A	2205	broad.mit.edu	37	chr1	159277622	159277622	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacacaggattatttatctCaactcagcagcaggtcacat	8	10	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159277622	G	G	159277622	4	3	144	1	0	0	0	0	0	1	0	0	5831	838	29	4	692	4	FCER1A	1	159277622	Nonsense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	258241	159277622	89972999	65	124075											
CD244	51744	broad.mit.edu	37	chr1	160805878	160805878	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagctatcttctggattcTagaagcaccaagatcttatt	6	10	4	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160805878	C	C	160805878	1	2	144	0	1	0	0	0	0	0	0	0	3017	1537	53	5		5	CD244	1	160805878	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	1528256	160805878	88444743	66	124076											
FCGR3B	2215	broad.mit.edu	37	chr1	161595804	161595804	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggggacctcctggtgatCaccaggagggaaccacatat	12	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161595804	T	T	161595804	1	4	144	0	1	0	0	0	0	0	0	0	5842	841	29	4		4	FCGR3B	1	161595804	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	789926	161595804	87654817	67	124077											
DUSP27	92235	broad.mit.edu	37	chr1	167097297	167097297	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacagagtctaaatcctccAgttacaagttttccaaatcc	5	11	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167097297	G	G	167097297	3	3	144	1	0	0	0	0	1	0	0	0	4864	188	7	5	2947	5	DUSP27	1	167097297	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	5501493	167097297	82153324	68	124078											
SELP	6403	broad.mit.edu	37	chr1	169563046	169563046	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctcccagaaagttttcaaGaactctaagatgtgcgatca	7	10	4	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169563046	C	C	169563046	1	2	144	0	1	0	0	0	0	0	0	0	14132	957	33	4		4	SELP	1	169563046	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2465749	169563046	79687575	69	124079											
SELE	6401	broad.mit.edu	37	chr1	169697307	169697307	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagaactcacagctggaccCataacggaaactgccagaag	11	11	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169697307	G	G	169697307	3	3	144	1	0	0	0	0	1	0	0	0	14126	594	21	4	685	4	SELE	1	169697307	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	134261	169697307	79553314	70	124080											
PRRX1	5396	broad.mit.edu	37	chr1	170695456	170695456	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaatcctactcaggagaCgtgactgctgtggagcagcc	11	12	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170695456	T	T	170695456	2	4	144	1	0	0	0	0	0	0	0	1	12718	535	19	4		4	PRRX1	1	170695456	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	998149	170695456	78555165	71	124081											
C1orf129	80133	broad.mit.edu	37	chr1	170934337	170934337	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagctcatatctgcaagagAgaataatggtgatcatcaac	8	7	4	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170934337	G	G	170934337	3	3	144	1	0	0	0	0	1	0	0	0	2016	296	11	5	443	5	C1orf129	1	170934337	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	238881	170934337	78316284	72	124082											
SLC9A11	284525	broad.mit.edu	37	chr1	173472449	173472449	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctttcctggttgttcaaaGaccgtgttgactgaggctaa	10	8	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173472449	A	A	173472449	2	1	144	1	0	0	0	0	0	0	0	1	14825	929	33	4		4	SLC9A11	1	173472449	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	2538112	173472449	75778172	73	124083											
CACYBP	27101	broad.mit.edu	37	chr1	174979302	174979302	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgagctgcatatataaAtttgacagatagctatttac	8	5	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174979302	C	C	174979302	1	2	144	0	1	0	0	0	0	0	0	0	2590	116	4	5		5	CACYBP	1	174979302	3'UTR	SNP	A	TCGA-49-6742-01A-11D-1855-08	1506853	174979302	74271319	74	124084											
ASTN1	460	broad.mit.edu	37	chr1	176853571	176853571	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gattggtggctctgagtgttCccactccaggaccacaagag	12	11	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176853571	A	A	176853571	4	1	144	1	0	0	0	0	0	1	0	0	1068	864	30	3	778	3	ASTN1	1	176853571	Nonsense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1874269	176853571	72397050	75	124085											
TDRD5	163589	broad.mit.edu	37	chr1	179660106	179660106	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggaggagggagaaaaacaGaatccagccgcttaggcttt	14	7	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179660106	C	C	179660106	1	2	144	0	1	0	0	0	0	0	0	0	15855	957	33	4		4	TDRD5	1	179660106	3'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	2806535	179660106	69590515	76	124086											
APOBEC4	403314	broad.mit.edu	37	chr1	183616705	183616705	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggtttgcttttagtgcatCagtttatctccatcttggct	8	8	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183616705	G	G	183616705	1	3	144	0	1	0	0	0	0	0	0	0	798	841	29	4		4	APOBEC4	1	183616705	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	3956599	183616705	65633916	77	124087											
FAM5C	339479	broad.mit.edu	37	chr1	190424018	190424018	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagctctgcttcgccatatCatgcttccactggggattta	8	13	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190424018	G	G	190424018	3	3	144	1	0	0	0	0	1	0	0	0	5645	826	29	4	2325	4	FAM5C	1	190424018	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	6807313	190424018	58826603	78	124088											
KCNT2	343450	broad.mit.edu	37	chr1	196309587	196309587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctgaattctcttctttgGtaatattaatataaaagcat	5	5	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196309587	T	T	196309587	3	4	144	1	0	0	0	0	1	0	0	0	8162	1261	44	3	1792	3	KCNT2	1	196309587	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	5885569	196309587	52941034	79	124089											
NR5A2	2494	broad.mit.edu	37	chr1	200080462	200080463	+	Intron	INS	-	T	T													gcaacaagtgagtgtagagaINSccaaaaaaaaaaaaaaagca					rs143209337	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200080463	T	T	200080462	6	5	144	0	1	1	1	0	0	0	0	0	10731	290	10	0		0	NR5A2	1	200080462	Intron	INS	-	TCGA-49-6742-01A-11D-1855-08	3770875	200080462	49170159	80	124090											
KIF21B	23046	broad.mit.edu	37	chr1	200968473	200968473	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccacagctcaggcccacGcacccttctcctcggggtct	9	19	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200968473	A	A	200968473	1	1	144	0	1	0	0	0	0	0	0	0	8359	1102	38	4		4	KIF21B	1	200968473	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	888011	200968473	48282148	81	124091											
ADIPOR1	51094	broad.mit.edu	37	chr1	202920103	202920103	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccttctcttctagcagGggtcccagttcagccagttc	9	14	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202920103	T	T	202920103	2	4	144	1	0	0	0	0	0	0	0	1	318	1219	43	2		2	ADIPOR1	1	202920103	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1951630	202920103	46330518	82	124092											
PLEKHA6	22874	broad.mit.edu	37	chr1	204199511	204199511	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgttggcagatgccaggctCacgcctgtgggtagctggga	17	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204199511	G	G	204199511	1	3	144	0	1	0	0	0	0	0	0	0	12155	841	29	4		4	PLEKHA6	1	204199511	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1279408	204199511	45051110	83	124093											
LGTN	1939	broad.mit.edu	37	chr1	206769279	206769279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcagttaggtgtaggctgAaattgcaggtccacaacctt	12	8	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206769279	T	T	206769279	1	4	144	0	1	0	0	0	0	0	0	0	8832	261	9	5		5	LGTN	1	206769279	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	2569768	206769279	42481342	84	124094											
C4BPA	722	broad.mit.edu	37	chr1	207314681	207314681	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacgtgtcctgagagcactGagagctaagtttcttccctg	12	10	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207314681	C	C	207314681	1	2	144	0	1	0	0	0	0	0	0	0	2272	1305	45	4		4	C4BPA	1	207314681	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	545402	207314681	41935940	85	124095											
CD46	4179	broad.mit.edu	37	chr1	207925405	207925405	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccgccccgggcgcggctCgggccacgcccacctgtcct	12	21	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207925405	T	T	207925405	1	4	144	0	1	0	0	0	0	0	0	0	3048	899	31	4		4	CD46	1	207925405	5'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	610724	207925405	41325216	86	124096											
TMEM206	55248	broad.mit.edu	37	chr1	212538537	212538537	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccattgatgtggacagttctCtaaacaacgcgaggtgactt	10	9	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212538537	T	T	212538537	1	4	144	0	1	0	0	0	0	0	0	0	16254	928	32	4		4	TMEM206	1	212538537	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	4613132	212538537	36712084	87	124097											
CENPF	1063	broad.mit.edu	37	chr1	214830338	214830338	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaagaactgaaagaaactCttgaagaaaaaaccaaggag	8	6	2	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214830338	T	T	214830338	3	4	144	1	0	0	0	0	1	0	0	0	3261	913	32	4	8614	4	CENPF	1	214830338	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2291801	214830338	34420283	88	124098											
USH2A	7399	broad.mit.edu	37	chr1	216371906	216371906	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcagtcttctcatgtataGttcatatcttataattattc	3	8	5	0	rs150978513	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216371906	C	C	216371906	3	2	144	1	0	0	0	0	1	0	0	0	17162	1020	36	4	12010	4	USH2A	1	216371906	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1541568	216371906	32878715	89	124099											
USH2A	7399	broad.mit.edu	37	chr1	216420227	216420227	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaagaattattttgccGtaggtagaagtttccctcca	10	7	0	2	rs142655448		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216420227	A	A	216420227	3	1	144	1	0	0	0	0	1	0	0	0	17162	1144	40	4	13353	4	USH2A	1	216420227	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	48321	216420227	32830394	90	124100											
TGFB2	7042	broad.mit.edu	37	chr1	218607277	218607277	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgtgtttttatgcatgTgaccatgcaattgagatgac	11	5	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	218607277	G	G	218607277	1	3	144	0	1	0	0	0	0	0	0	0	15941	1711	59	5		5	TGFB2	1	218607277	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	2187050	218607277	30643344	91	124101											
LEFTY2	7044	broad.mit.edu	37	chr1	226125264	226125264	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctccttgatgctgacgatCatgggcagcgaggcagtctc	12	13	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226125264	A	A	226125264	3	1	144	1	0	0	0	0	1	0	0	0	8788	826	29	3	126	3	LEFTY2	1	226125264	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	7517987	226125264	23125357	92	124102											
GUK1	2987	broad.mit.edu	37	chr1	228336333	228336333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcccttcctggataccaGccctcccaactccctttctt	4	20	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228336333	T	T	228336333	1	4	144	0	1	0	0	0	0	0	0	0	6965	986	34	3		3	GUK1	1	228336333	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2211069	228336333	20914288	93	124103											
NUP133	55746	broad.mit.edu	37	chr1	229600711	229600711	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcataaaaattatgcctcttCatcactgctggaaaattaca	5	9	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229600711	T	T	229600711	1	4	144	0	1	0	0	0	0	0	0	0	10849	841	29	4		4	NUP133	1	229600711	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1264378	229600711	19649910	94	124104											
ACTN2	88	broad.mit.edu	37	chr1	236889200	236889200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaactaagcggcatttcCctggggccactttttcttgg	11	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236889200	A	A	236889200	1	1	144	0	1	0	0	0	0	0	0	0	205	638	22	2		2	ACTN2	1	236889200	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	7288489	236889200	12361421	95	124105											
MTR	4548	broad.mit.edu	37	chr1	237057846	237057846	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcaaggcgctgggggacCggctggcagaggtaaggcag	20	8	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237057846	T	T	237057846	3	4	144	1	0	0	0	0	1	0	0	0	10052	643	23	4	3512	4	MTR	1	237057846	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	168646	237057846	12192775	96	124106											
RYR2	6262	broad.mit.edu	37	chr1	237806644	237806644	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagttgattcatgccgggaaGggagaagccatcagaattag	13	6	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237806644	C	C	237806644	3	2	144	1	0	0	0	0	1	0	0	0	13880	991	35	4	7429	4	RYR2	1	237806644	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	748798	237806644	11443977	97	124107											
RYR2	6262	broad.mit.edu	37	chr1	237947171	237947171	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacttccacaaagcgatggaGagccataagcactacacgca	9	12	0	1	rs41267517		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237947171	C	C	237947171	3	2	144	1	0	0	0	0	1	0	0	0	13880	933	33	4	12517	4	RYR2	1	237947171	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	140527	237947171	11303450	98	124108											
FMN2	56776	broad.mit.edu	37	chr1	240306327	240306327	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccagccatggccactggActcataagctgccagtcact	9	15	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240306327	G	G	240306327	1	3	144	0	1	0	0	0	0	0	0	0	6008	290	10	5		5	FMN2	1	240306327	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	2359156	240306327	8944294	99	124109											
FMN2	56776	broad.mit.edu	37	chr1	240497281	240497281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatatagtcatattccattAttctttattcgttggatgat	5	6	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240497281	T	T	240497281	1	4	144	0	1	0	0	0	0	0	0	0	6008	464	16	5		5	FMN2	1	240497281	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	190954	240497281	8753340	100	124110											
SCCPDH	51097	broad.mit.edu	37	chr1	246922379	246922379	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aactcaaaggttattccattCcttttatgggatctgatgtg	8	7	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246922379	G	G	246922379	3	3	144	1	0	0	0	0	1	0	0	0	13997	855	30	4	765	4	SCCPDH	1	246922379	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	6425098	246922379	2328242	101	124111											
AHCTF1	25909	broad.mit.edu	37	chr1	247068858	247068858	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctacctatcttgtgtagacTgaacagcccacaagtaacag	7	12	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247068858	C	C	247068858	3	2	144	1	0	0	0	0	1	0	0	0	408	1580	55	5	6058	5	AHCTF1	1	247068858	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	146479	247068858	2181763	102	124112											
OR1C1	26188	broad.mit.edu	37	chr1	247921160	247921160	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcaagagagctgcaggagAggattgagatcacagaagaa	15	5	1	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247921160	G	G	247921160	2	3	144	1	0	0	0	0	0	0	0	1	11046	291	11	5		5	OR1C1	1	247921160	Silent	SNP	A	TCGA-49-6742-01A-11D-1855-08	852302	247921160	1329461	103	124113											
OR2M4	26245	broad.mit.edu	37	chr1	248402282	248402282	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatcctgctgggaatcTtcaatcacagtcccacccac	5	16	5	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248402282	G	G	248402282	3	3	144	1	0	0	0	0	1	0	0	0	11106	1609	56	5	54	5	OR2M4	1	248402282	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	481122	248402282	848339	104	124114											
OR2T2	401992	broad.mit.edu	37	chr1	248616758	248616758	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatctctgtctcctacacGcacatcctcctgactgtcca	5	17	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248616758	A	A	248616758	2	1	144	1	0	0	0	0	0	0	0	1	11114	1074	38	4		4	OR2T2	1	248616758	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	214476	248616758	633863	105	124115											
OR2T3	343173	broad.mit.edu	37	chr1	248636563	248636563	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaataattcaaagcacatgtCttaccagaaaaaggtcagga	7	7	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248636563	G	G	248636563	1	3	144	0	1	0	0	0	0	0	0	0	11117	928	32	4		4	OR2T3	1	248636563	5'Flank	SNP	C	TCGA-49-6742-01A-11D-1855-08	19805	248636563	614058	106	124116											
OR2T10	127069	broad.mit.edu	37	chr1	248756476	248756476	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgacacagcacaagtacatGaaaatcttgtaaagtgaggt	9	6	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248756476	A	A	248756476	2	1	144	1	0	0	0	0	0	0	0	1	11111	1281	45	4		4	OR2T10	1	248756476	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	119913	248756476	494145	107	124117											
PXDN	7837	broad.mit.edu	37	chr2	1651936	1651936	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatcccacacagcctcttCagctcaccttttcagtttct	4	17	5	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1651936	T	T	1651936	1	4	144	0	1	0	0	0	0	0	0	0	12955	841	29	4		4	PXDN	2	1651936	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08		1651936	241547437	108	124118											
TRIB2	28951	broad.mit.edu	37	chr2	12880440	12880440	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaggagcttatgttttcctCctttcttgcaggactcgggt	10	10	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12880440	T	T	12880440	1	4	144	0	1	0	0	0	0	0	0	0	16607	870	30	4		4	TRIB2	2	12880440	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	11228504	12880440	230318933	109	124119											
KIF3C	3797	broad.mit.edu	37	chr2	26174626	26174626	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggagtggacccacaagtcCcccagcccagacagctgggt	12	15	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26174626	T	T	26174626	1	4	144	0	1	0	0	0	0	0	0	0	8372	638	22	4		4	KIF3C	2	26174626	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	13294186	26174626	217024747	110	124120											
BRE	9577	broad.mit.edu	37	chr2	28521117	28521117	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgtggttcaaatagagtttCgtacctaacattcggattta	8	6	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28521117	T	T	28521117	1	4	144	0	1	0	0	0	0	0	0	0	1518	899	31	4		4	BRE	2	28521117	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2346491	28521117	214678256	111	124121											
THUMPD2	80745	broad.mit.edu	37	chr2	39998790	39998790	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatattcaacctagaaataGaaaaacagcttttaatgtag	5	5	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39998790	C	C	39998790	1	2	144	0	1	0	0	0	0	0	0	0	16006	957	33	4		4	THUMPD2	2	39998790	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	11477673	39998790	203200583	112	124122											
SLC8A1	6546	broad.mit.edu	37	chr2	40401952	40401952	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttagatagcattagacttGaaaaattcatacctgttatt	6	5	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40401952	C	C	40401952	1	2	144	0	1	0	0	0	0	0	0	0	14820	1305	45	4		4	SLC8A1	2	40401952	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	403162	40401952	202797421	113	124123											
SLC8A1	6546	broad.mit.edu	37	chr2	40655729	40655729	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataacatttcctcgagctccAgatgttctcaatactttcac	4	12	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40655729	G	G	40655729	2	3	144	1	0	0	0	0	0	0	0	1	14820	175	7	5		5	SLC8A1	2	40655729	Silent	SNP	A	TCGA-49-6742-01A-11D-1855-08	253777	40655729	202543644	114	124124											
THADA	63892	broad.mit.edu	37	chr2	43519314	43519314	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatggacacagtgctccgtCtggggaagccactcaccagg	13	12	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43519314	G	G	43519314	3	3	144	1	0	0	0	0	1	0	0	0	15963	912	32	4	1019	4	THADA	2	43519314	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2863585	43519314	199680059	115	124125											
NRXN1	9378	broad.mit.edu	37	chr2	50464087	50464087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttgtccaccacctttgCtaaagatatatgtcgtccca	6	11	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50464087	A	A	50464087	3	1	144	1	0	0	0	0	1	0	0	0	10760	797	28	3	1161	3	NRXN1	2	50464087	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	6944773	50464087	192735286	116	124126											
ADD2	119	broad.mit.edu	37	chr2	70933523	70933523	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcggcgaggcagcctcgggGaccgtctcttcgctcatttt	14	13	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70933523	T	T	70933523	2	4	144	1	0	0	0	0	0	0	0	1	305	1161	41	3		3	ADD2	2	70933523	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	20469436	70933523	172265850	117	124127											
CCT7	10574	broad.mit.edu	37	chr2	73476906	73476906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaagctgcctggcctcGggaaccttcactgctagatc	12	13	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73476906	T	T	73476906	1	4	144	0	1	0	0	0	0	0	0	0	2989	1131	39	1		1	CCT7	2	73476906	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2543383	73476906	169722467	118	124128											
SNRNP200	23020	broad.mit.edu	37	chr2	96944390	96944390	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacttggactgctccaggtCactcagggtctgctccacca	10	15	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96944390	A	A	96944390	3	1	144	1	0	0	0	0	1	0	0	0	14966	826	29	3	1059	3	SNRNP200	2	96944390	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	23467484	96944390	146254983	119	124129											
GYPC	2995	broad.mit.edu	37	chr2	127451417	127451417	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatcttcctctctgacctcAgattcttgtcctctgttcac	5	14	6	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127451417	G	G	127451417	1	3	144	0	1	0	0	0	0	0	0	0	6975	203	7	5		5	GYPC	2	127451417	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	30507027	127451417	115747956	120	124130											
POTEF	728378	broad.mit.edu	37	chr2	130877669	130877669	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctctgtggagcttgtcCagatcttctccacggacgtg	12	12	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130877669	T	T	130877669	2	4	144	1	0	0	0	0	0	0	0	1	12361	581	21	4		4	POTEF	2	130877669	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	3426252	130877669	112321704	121	124131											
POTEE	445582	broad.mit.edu	37	chr2	131976395	131976395	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgtccgtggagaagatctGgacaagctccacagagctgc	12	12	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131976395	A	A	131976395	2	1	144	1	0	0	0	0	0	0	0	1	12360	1335	47	4		4	POTEE	2	131976395	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1098726	131976395	111222978	122	124132											
LRP1B	53353	broad.mit.edu	37	chr2	141081555	141081555	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaccatggccaaatttttGaactcgaaatacaccatttt	5	9	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141081555	C	C	141081555	3	2	144	1	0	0	0	0	1	0	0	0	9042	1299	45	4	1422	4	LRP1B	2	141081555	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	9105160	141081555	102117818	123	124133											
LRP1B	53353	broad.mit.edu	37	chr2	141773491	141773491	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaatacatccaactaagaCattaaaaaaacaacaaaaat	1	9	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141773491	T	T	141773491	1	4	144	0	1	0	0	0	0	0	0	0	9042	493	17	4		4	LRP1B	2	141773491	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	691936	141773491	101425882	124	124134											
LY75	4065	broad.mit.edu	37	chr2	160661621	160661621	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgcatatcgaactgatgaGaaacccgccaggtgcaaacg	11	10	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160661621	A	A	160661621	2	1	144	1	0	0	0	0	0	0	0	1	9187	933	33	4		4	LY75	2	160661621	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	18888130	160661621	82537752	125	124135											
PLA2R1	22925	broad.mit.edu	37	chr2	160884750	160884750	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactatttcatgatcaatgtGgtttagatattttttacata	5	4	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160884750	A	A	160884750	3	1	144	1	0	0	0	0	1	0	0	0	12105	1348	47	4	3421	4	PLA2R1	2	160884750	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	223129	160884750	82314623	126	124136											
IFIH1	64135	broad.mit.edu	37	chr2	163138094	163138094	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttcatttctccatatcaGcacactacagtgagaaaata	6	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163138094	A	A	163138094	1	1	144	0	1	0	0	0	0	0	0	0	7590	986	34	4		4	IFIH1	2	163138094	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2253344	163138094	80061279	127	124137											
SCN3A	6328	broad.mit.edu	37	chr2	165947525	165947525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taagaataggtgctagcaatCcatcccagccagcagaggtt	10	10	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165947525	A	A	165947525	3	1	144	1	0	0	0	0	1	0	0	0	14031	855	30	3	868	3	SCN3A	2	165947525	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2809431	165947525	77251848	128	124138											
XIRP2	129446	broad.mit.edu	37	chr2	168096470	168096470	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaattgatgttcatggaacaGaaatggtaactatttagaaa	8	3	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168096470	A	A	168096470	3	1	144	1	0	0	0	0	1	0	0	0	17557	943	33	4	982	4	XIRP2	2	168096470	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	2148945	168096470	75102903	129	124139											
KIAA1715	80856	broad.mit.edu	37	chr2	176794750	176794750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatcaggaatagaatcagctCcaggaactgtggagttggtt	13	6	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176794750	A	A	176794750	3	1	144	1	0	0	0	0	1	0	0	0	8324	855	30	3	58	3	KIAA1715	2	176794750	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	8698280	176794750	66404623	130	124140											
HOXD3	3232	broad.mit.edu	37	chr2	177034065	177034065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccatccagagctctgccCctctgagagccccagcccac	8	20	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177034065	A	A	177034065	3	1	144	1	0	0	0	0	1	0	0	0	7390	623	22	2	225	2	HOXD3	2	177034065	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	239315	177034065	66165308	131	124141											
RBM45	129831	broad.mit.edu	37	chr2	178981066	178981066	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttacaagaatctttgttatGataccaaagtcctacacaga	5	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178981066	A	A	178981066	3	1	144	1	0	0	0	0	1	0	0	0	13247	1290	45	4	384	4	RBM45	2	178981066	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1947001	178981066	64218307	132	124142											
TTN	7273	broad.mit.edu	37	chr2	179438325	179438325	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacctttagctttgttacTtggacttctgaggctacatt	9	8	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179438325	G	G	179438325	3	3	144	1	0	0	0	0	1	0	0	0	16861	1606	56	5	35593	5	TTN	2	179438325	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	457259	179438325	63761048	133	124143											
TTN	7273	broad.mit.edu	37	chr2	179458655	179458655	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctgcttttgaaagaacaGaagatctattctttccacta	5	8	3	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179458655	A	A	179458655	1	1	144	0	1	0	0	0	0	0	0	0	16861	957	33	4		4	TTN	2	179458655	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	20330	179458655	63740718	134	124144											
TTN	7273	broad.mit.edu	37	chr2	179579143	179579143	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgcaatgttttctgaataAgaaatccatatgttgtcact	7	6	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179579143	C	C	179579143	2	2	144	1	0	0	0	0	0	0	0	1	16861	59	3	5		5	TTN	2	179579143	Silent	SNP	A	TCGA-49-6742-01A-11D-1855-08	120488	179579143	63620230	135	124145											
TTN	7273	broad.mit.edu	37	chr2	179604934	179604934	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgttgtcagaatgctcttcTttgagcagtacctgcttttc	8	10	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179604934	C	C	179604934	2	2	144	1	0	0	0	0	0	0	0	1	16861	1606	56	5		5	TTN	2	179604934	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	25791	179604934	63594439	136	124146											
ZNF385B	151126	broad.mit.edu	37	chr2	180309776	180309776	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaacgtatttctaggtagCtattttctccattgccaact	5	9	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180309776	G	G	180309776	1	3	144	0	1	0	0	0	0	0	0	0	18003	812	28	4		4	ZNF385B	2	180309776	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	704842	180309776	62889597	137	124147											
DUSP19	142679	broad.mit.edu	37	chr2	183943759	183943759	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactggaaagaaaattatagAaacatggaaagatgccagaa	9	4	0	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183943759	G	G	183943759	3	3	144	1	0	0	0	0	1	0	0	0	4858	246	9	5	100	5	DUSP19	2	183943759	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	3633983	183943759	59255614	138	124148											
ZNF804A	91752	broad.mit.edu	37	chr2	185802437	185802437	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaagattctatcgaaaaCgtagacaacattcacattct	5	9	3	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185802437	T	T	185802437	3	4	144	1	0	0	0	0	1	0	0	0	18299	536	19	4	2328	4	ZNF804A	2	185802437	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1858678	185802437	57396936	139	124149											
COL3A1	1281	broad.mit.edu	37	chr2	189855103	189855103	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagtaagtagagtttctaAgttgtttacaaggtattcca	9	5	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189855103	G	G	189855103	1	3	144	0	1	0	0	0	0	0	0	0	3720	87	3	5		5	COL3A1	2	189855103	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	4052666	189855103	53344270	140	124150											
DNAH7	56171	broad.mit.edu	37	chr2	196865658	196865658	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatatgtatgaattgtgacaGactaagtagtacaccagtcc	8	7	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196865658	C	C	196865658	1	2	144	0	1	0	0	0	0	0	0	0	4646	957	33	4		4	DNAH7	2	196865658	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	7010555	196865658	46333715	141	124151											
HECW2	57520	broad.mit.edu	37	chr2	197194259	197194259	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcataccttcgaaactgtAcactttcaaactggatgtca	5	10	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197194259	G	G	197194259	1	3	144	0	1	0	0	0	0	0	0	0	7110	406	14	5		5	HECW2	2	197194259	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	328601	197194259	46005114	142	124152											
FZD7	8324	broad.mit.edu	37	chr2	202899457	202899457	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcgcactgtccgcgggCgccggggcgcagccgtacca	17	16	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202899457	T	T	202899457	2	4	144	1	0	0	0	0	0	0	0	1	6195	755	27	4		4	FZD7	2	202899457	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	5705198	202899457	40299916	143	124153											
PARD3B	117583	broad.mit.edu	37	chr2	205969185	205969185	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggaagacagagaagttttGaatggtgtacagacagaact	12	4	0	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205969185	C	C	205969185	3	2	144	1	0	0	0	0	1	0	0	0	11538	1281	45	4	558	4	PARD3B	2	205969185	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	3069728	205969185	37230188	144	124154											
PARD3B	117583	broad.mit.edu	37	chr2	206036935	206036935	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttcctttcttctgccttagGatggtcgtctgcgaatgaat	9	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206036935	A	A	206036935	3	1	144	1	0	0	0	0	1	0	0	0	11538	1188	41	4	1667	4	PARD3B	2	206036935	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	67750	206036935	37162438	145	124155											
DYTN	391475	broad.mit.edu	37	chr2	207575368	207575368	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaataaagtctctctcattaTataaatcccacatcatggaa	4	9	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207575368	A	A	207575368	1	1	144	0	1	0	0	0	0	0	0	0	4901	1421	49	5		5	DYTN	2	207575368	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	1538433	207575368	35624005	146	124156											
PTH2R	5746	broad.mit.edu	37	chr2	209355384	209355384	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtttctttgtgtctatcatCtactgctactgcaatggaga	9	8	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209355384	T	T	209355384	2	4	144	1	0	0	0	0	0	0	0	1	12866	903	32	4		4	PTH2R	2	209355384	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1780016	209355384	33843989	147	124157											
ERBB4	2066	broad.mit.edu	37	chr2	212484049	212484049	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacatctcaacctattaagTtcttacaaagtaacttagaa	4	8	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212484049	G	G	212484049	1	3	144	0	1	0	0	0	0	0	0	0	5251	1740	60	5		5	ERBB4	2	212484049	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	3128665	212484049	30715324	148	124158											
ERBB4	2066	broad.mit.edu	37	chr2	212543997	212543997	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgctatttctaaaggagTtcacttaaaagagatatatg	7	4	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212543997	G	G	212543997	1	3	144	0	1	0	0	0	0	0	0	0	5251	1740	60	5		5	ERBB4	2	212543997	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	59948	212543997	30655376	149	124159											
BARD1	580	broad.mit.edu	37	chr2	215646023	215646023	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcctttttagccctctcaGaaacatctgcaggaggactt	8	11	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215646023	A	A	215646023	3	1	144	1	0	0	0	0	1	0	0	0	1317	942	33	4	1790	4	BARD1	2	215646023	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	3102026	215646023	27553350	150	124160											
MARCH4	57574	broad.mit.edu	37	chr2	217234653	217234653	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttccacagaagaaggtgGcaaggggggtggaggtggca	18	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217234653	A	A	217234653	3	1	144	1	0	0	0	0	1	0	0	0	9395	1203	42	4	917	4	MARCH4	2	217234653	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1588630	217234653	25964720	151	124161											
ZNF142	7701	broad.mit.edu	37	chr2	219508461	219508461	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcttgtgatgcaggtggGggcttcccactttctgtgtc	13	10	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219508461	T	T	219508461	2	4	144	1	0	0	0	0	0	0	0	1	17857	1219	43	2		2	ZNF142	2	219508461	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	2273808	219508461	23690912	152	124162											
TUBA4A	7277	broad.mit.edu	37	chr2	220115640	220115640	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtggatgcgagggtaggGcaccaggttggtctggaact	18	6	1	0	rs147946711		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220115640	A	A	220115640	3	1	144	1	0	0	0	0	1	0	0	0	16875	1203	42	4	569	4	TUBA4A	2	220115640	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	607179	220115640	23083733	153	124163											
COL4A4	1286	broad.mit.edu	37	chr2	227925020	227925020	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatctaatgtgaacaaaatGagatgattttctttaagtct	6	4	3	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227925020	A	A	227925020	1	1	144	0	1	0	0	0	0	0	0	0	3725	1305	45	4		4	COL4A4	2	227925020	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	7809380	227925020	15274353	154	124164											
LRRN1	57633	broad.mit.edu	37	chr3	3888070	3888070	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcgatgtccatgaatacaAcctaacgcatctgcagcctt	7	12	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3888070	C	C	3888070	3	2	144	1	0	0	0	0	1	0	0	0	9121	43	2	5	1747	5	LRRN1	3	3888070	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08		3888070	194134360	155	124165											
PPARG	5468	broad.mit.edu	37	chr3	12393098	12393098	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattccatgctgttatgggtGaaactctgggagattctcct	10	8	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12393098	A	A	12393098	3	1	144	1	0	0	0	0	1	0	0	0	12395	1291	45	4	9	4	PPARG	3	12393098	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	8505028	12393098	185629332	156	124166											
ZNF385D	79750	broad.mit.edu	37	chr3	21706566	21706567	+	Intron	INS	-	A	A													atcagggacaccacgcatggINSaaaaaaacaccaaagttgct							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21706567	A	A	21706566	6	5	144	0	1	1	1	0	0	0	0	0	18004	1189	41	0		0	ZNF385D	3	21706566	Intron	INS	-	TCGA-49-6742-01A-11D-1855-08	9313468	21706566	176315864	157	124167											
LRRC3B	116135	broad.mit.edu	37	chr3	26751187	26751187	+	Frame_Shift_Del	DEL	A	-	-													aatctggtagacctgtggttAacccgttccctctccatgtg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26751187	-	-	26751187	7	5	144	1	0	1	0	1	0	0	0	0	9083	359	13	0	26	0	LRRC3B	3	26751187	Frame_Shift_Del	DEL	A	TCGA-49-6742-01A-11D-1855-08	5044621	26751187	171271243	158	124168											
NEK10	152110	broad.mit.edu	37	chr3	27152624	27152624	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacaggacccccagaaagaAgtcctgcaggccccatggca	11	15	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27152624	G	G	27152624	1	3	144	0	1	0	0	0	0	0	0	0	10417	87	3	5		5	NEK10	3	27152624	3'UTR	SNP	A	TCGA-49-6742-01A-11D-1855-08	401437	27152624	170869806	159	124169											
NEK10	152110	broad.mit.edu	37	chr3	27152782	27152782	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcttttggttgggtgaTtcttggtcccccatggatag	11	8	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27152782	C	C	27152782	3	2	144	1	0	0	0	0	1	0	0	0	10417	1508	52	5		5	NEK10	3	27152782	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	158	27152782	170869648	160	124170											
NEK10	152110	broad.mit.edu	37	chr3	27203854	27203854	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctccgctctttgtattaaAattaccacccaagcatcgtt	4	12	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27203854	C	C	27203854	1	2	144	0	1	0	0	0	0	0	0	0	10417	29	1	5		5	NEK10	3	27203854	3'UTR	SNP	A	TCGA-49-6742-01A-11D-1855-08	51072	27203854	170818576	161	124171											
NEK10	152110	broad.mit.edu	37	chr3	27204078	27204078	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcactttcagaagcaggtCaagaggcagcaaagctgaag	13	8	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27204078	T	T	27204078	3	4	144	1	0	0	0	0	1	0	0	0	10417	841	29	4		4	NEK10	3	27204078	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	224	27204078	170818352	162	124172											
XYLB	9942	broad.mit.edu	37	chr3	38401862	38401862	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttcatgtgcacaaggatgGgctgacggtcacttctccag	12	10	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38401862	C	C	38401862	3	2	144	1	0	0	0	0	1	0	0	0	17589	1232	43	4	183	4	XYLB	3	38401862	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	11197784	38401862	159620568	163	124173											
NKTR	4820	broad.mit.edu	37	chr3	42681380	42681380	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcttgttttgtgtgattcaGagagtagattgaaaacttag	11	3	2	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42681380	C	C	42681380	1	2	144	0	1	0	0	0	0	0	0	0	10543	957	33	4		4	NKTR	3	42681380	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4279518	42681380	155341050	164	124174											
ZNF35	7584	broad.mit.edu	37	chr3	44701145	44701145	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggaaagccttcagtcagctCtcttgccttattgtccacca	8	13	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44701145	T	T	44701145	2	4	144	1	0	0	0	0	0	0	0	1	17988	900	32	4		4	ZNF35	3	44701145	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	2019765	44701145	153321285	165	124175											
CELSR3	1951	broad.mit.edu	37	chr3	48686568	48686568	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcaccagcagactgagctCtcgaaaggcaggggaggtac	13	11	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48686568	T	T	48686568	3	4	144	1	0	0	0	0	1	0	0	0	3253	922	32	4	3461	4	CELSR3	3	48686568	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3985423	48686568	149335862	166	124176											
CELSR3	1951	broad.mit.edu	37	chr3	48696534	48696534	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgaacggttggatacataGttgttgaagaggatctggaa	13	4	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48696534	C	C	48696534	3	2	144	1	0	0	0	0	1	0	0	0	3253	1020	36	4	6544	4	CELSR3	3	48696534	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	9966	48696534	149325896	167	124177											
IP6K2	51447	broad.mit.edu	37	chr3	48725789	48725789	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagccagcatcctggccctCatgcaccacggtgtcctcgc	9	17	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48725789	T	T	48725789	3	4	144	1	0	0	0	0	1	0	0	0	7859	835	29	4	86	4	IP6K2	3	48725789	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	29255	48725789	149296641	168	124178											
ACOX2	8309	broad.mit.edu	37	chr3	58508312	58508312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtctgtaaatgctgcaCtgagtcctttatgagcctga	11	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58508312	A	A	58508312	3	1	144	1	0	0	0	0	1	0	0	0	159	565	20	3	518	3	ACOX2	3	58508312	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	9782523	58508312	139514118	169	124179											
FAM3D	131177	broad.mit.edu	37	chr3	58639320	58639320	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcatgtctcctgggtcaCctagggatggagggaagaat	14	7	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58639320	G	G	58639320	1	3	144	0	1	0	0	0	0	0	0	0	5610	522	18	4		4	FAM3D	3	58639320	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	131008	58639320	139383110	170	124180											
FHIT	2272	broad.mit.edu	37	chr3	59737985	59737985	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccgcagagctgcggcttcTgctgccatttcctcctctga	9	16	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59737985	A	A	59737985	2	1	144	1	0	0	0	0	0	0	0	1	5934	1567	55	5		5	FHIT	3	59737985	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	1098665	59737985	138284445	171	124181											
MITF	4286	broad.mit.edu	37	chr3	69987181	69987181	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catggctatgcttacgcttaActccaactgtgaaaaagagg	9	9	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69987181	C	C	69987181	3	2	144	1	0	0	0	0	1	0	0	0	9689	43	2	5	775	5	MITF	3	69987181	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	10249196	69987181	128035249	172	124182											
GABRR3	200959	broad.mit.edu	37	chr3	97711637	97711637	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgtcaagagagggcaataGataagggtagtcttttccac	11	7	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97711637	C	C	97711637	1	2	144	0	1	0	0	0	0	0	0	0	6238	957	33	4		4	GABRR3	3	97711637	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	27724456	97711637	100310793	173	124183											
SENP7	57337	broad.mit.edu	37	chr3	101060619	101060619	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttggccgcatctgtgtttGagggctgacagaaagtggca	15	8	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101060619	A	A	101060619	3	1	144	1	0	0	0	0	1	0	0	0	14164	1294	45	4	1081	4	SENP7	3	101060619	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	3348982	101060619	96961811	174	124184											
MYH15	22989	broad.mit.edu	37	chr3	108117735	108117735	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatccctctgagttcaaCatagactatgcacctacaca	5	13	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108117735	A	A	108117735	1	1	144	0	1	0	0	0	0	0	0	0	10128	493	17	3		3	MYH15	3	108117735	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	7057116	108117735	89904695	175	124185											
WDR52	55779	broad.mit.edu	37	chr3	113079155	113079155	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagacaccttattattgtaGaaacatgtagattgtatcac	6	8	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113079155	C	C	113079155	1	2	144	0	1	0	0	0	0	0	0	0	17431	957	33	4		4	WDR52	3	113079155	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4961420	113079155	84943275	176	124186											
POLQ	10721	broad.mit.edu	37	chr3	121230866	121230866	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagagttcttacaaattaaGatactctcgcctataaccaa	4	10	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121230866	A	A	121230866	2	1	144	1	0	0	0	0	0	0	0	1	12303	932	33	4		4	POLQ	3	121230866	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	8151711	121230866	76791564	177	124187											
KALRN	8997	broad.mit.edu	37	chr3	124393476	124393476	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcaagtaagtgcctcgttGgcttccccgggagaggagta	13	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124393476	A	A	124393476	1	1	144	0	1	0	0	0	0	0	0	0	8045	1363	47	4		4	KALRN	3	124393476	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	3162610	124393476	73628954	178	124188											
EEFSEC	60678	broad.mit.edu	37	chr3	128060266	128060266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagataccgtatttccGggggcccctgcaaaccaagg	12	11	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128060266	T	T	128060266	3	4	144	1	0	0	0	0	1	0	0	0	4971	1116	39	1	995	1	EEFSEC	3	128060266	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	3666790	128060266	69962164	179	124189											
DNAJC13	23317	broad.mit.edu	37	chr3	132220426	132220426	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgtctcaaaaaaaaaaaaGaaaaaaaaacagggccatgt	6	6	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132220426	A	A	132220426	1	1	144	0	1	0	0	0	0	0	0	0	4672	957	33	4		4	DNAJC13	3	132220426	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4160160	132220426	65802004	180	124190											
ESYT3	83850	broad.mit.edu	37	chr3	138179623	138179623	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctcctggtgctctctgcaGagggagaagcattggtctgt	13	11	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138179623	C	C	138179623	1	2	144	0	1	0	0	0	0	0	0	0	5308	957	33	4		4	ESYT3	3	138179623	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	5959197	138179623	59842807	181	124191											
ZIC1	7545	broad.mit.edu	37	chr3	147130532	147130532	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttggctctcggcttggggtCgggcggcgagtggcagacag	19	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147130532	T	T	147130532	1	4	144	0	1	0	0	0	0	0	0	0	17804	899	31	4		4	ZIC1	3	147130532	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	8950909	147130532	50891898	182	124192											
PRKCI	5584	broad.mit.edu	37	chr3	170002471	170002471	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtttaaagatgaggaaatGattactaattttgctaattt	7	2	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170002471	C	C	170002471	1	2	144	0	1	0	0	0	0	0	0	0	12620	1305	45	4		4	PRKCI	3	170002471	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	22871939	170002471	28019959	183	124193											
ABCC5	10057	broad.mit.edu	37	chr3	183639187	183639187	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggggtgtcaaactccacCacctgcaaaagaaggagacg	12	10	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183639187	T	T	183639187	2	4	144	1	0	0	0	0	0	0	0	1	56	581	21	4		4	ABCC5	3	183639187	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	13636716	183639187	14383243	184	124194											
EPHB3	2049	broad.mit.edu	37	chr3	184297342	184297342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgttcgggagtttgccaagGagatcgacgtgtcctgcgtc	14	10	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184297342	C	C	184297342	3	2	144	1	0	0	0	0	1	0	0	0	5218	1175	41	4	1917	4	EPHB3	3	184297342	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	658155	184297342	13725088	185	124195											
TNK2	10188	broad.mit.edu	37	chr3	195608805	195608805	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggagggcaccccaggcttaGaacagacaagggcaggccca	14	12	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195608805	A	A	195608805	1	1	144	0	1	0	0	0	0	0	0	0	16441	957	33	4		4	TNK2	3	195608805	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	11311463	195608805	2413625	186	124196											
IQCG	84223	broad.mit.edu	37	chr3	197616625	197616625	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtacgacgtatgctatgCctgacaagctgcattctttc	9	10	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197616625	T	T	197616625	1	4	144	0	1	0	0	0	0	0	0	0	7880	754	26	4		4	IQCG	3	197616625	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2007820	197616625	405805	187	124197											
ZNF721	170960	broad.mit.edu	37	chr4	437398	437398	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagggttgtggaaatattAaaggctttaccacattctaa	9	5	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	437398	G	G	437398	2	3	144	1	0	0	0	0	0	0	0	1	18250	359	13	5		5	ZNF721	4	437398	Silent	SNP	A	TCGA-49-6742-01A-11D-1855-08		437398	190716878	188	124198											
TMEM175	84286	broad.mit.edu	37	chr4	945389	945389	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagggcccagccctgtgCcttcccggagtgggctctgt	17	13	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	945389	T	T	945389	1	4	144	0	1	0	0	0	0	0	0	0	16214	754	26	4		4	TMEM175	4	945389	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	507991	945389	190208887	189	124199											
WFS1	7466	broad.mit.edu	37	chr4	6296864	6296864	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcctgcaggacgacgaagAtgatgacgagctggcgggga	17	8	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6296864	T	T	6296864	3	4	144	1	0	0	0	0	1	0	0	0	17487	333	12	5	831	5	WFS1	4	6296864	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	5351475	6296864	184857412	190	124200											
DCAF4L1	285429	broad.mit.edu	37	chr4	41984969	41984969	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggctgctcatggctgtccGgcaggacctttattgtttcc	12	11	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41984969	A	A	41984969	3	1	144	1	0	0	0	0	1	0	0	0	4304	1116	39	4	1162	4	DCAF4L1	4	41984969	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	35688105	41984969	149169307	191	124201											
ATP8A1	10396	broad.mit.edu	37	chr4	42487455	42487455	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcattgacgtttataaatCaagaacttagatcaagtcat	5	6	4	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42487455	T	T	42487455	1	4	144	0	1	0	0	0	0	0	0	0	1196	841	29	4		4	ATP8A1	4	42487455	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	502486	42487455	148666821	192	124202											
ATP8A1	10396	broad.mit.edu	37	chr4	42551163	42551163	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcctagccataaaattttaCtgtaaaaaatgccaacacaa	3	9	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42551163	G	G	42551163	1	3	144	0	1	0	0	0	0	0	0	0	1196	580	20	4		4	ATP8A1	4	42551163	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	63708	42551163	148603113	193	124203											
KCTD8	386617	broad.mit.edu	37	chr4	44449818	44449818	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagacctccttggccagcgcGatgcgcccgcacaccatgat	10	16	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44449818	A	A	44449818	2	1	144	1	0	0	0	0	0	0	0	1	8185	1048	37	4		4	KCTD8	4	44449818	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1898655	44449818	146704458	194	124204											
SPATA18	132671	broad.mit.edu	37	chr4	52928477	52928477	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaactcaacccggagtcAatgcaaccaggttcaagacg	9	11	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52928477	C	C	52928477	3	2	144	1	0	0	0	0	1	0	0	0	15119	130	5	5	415	5	SPATA18	4	52928477	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	8478659	52928477	138225799	195	124205											
LPHN3	23284	broad.mit.edu	37	chr4	62599069	62599069	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctgtatatgaggatgatgAcaatgaggctactggaaata	11	4	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62599069	T	T	62599069	3	4	144	1	0	0	0	0	1	0	0	0	9004	275	10	5	1010	5	LPHN3	4	62599069	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	9670592	62599069	128555207	196	124206											
MUC7	4589	broad.mit.edu	37	chr4	71347020	71347020	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcttcctcagctccaccaGagaccacagctgccccaccc	5	21	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71347020	C	C	71347020	3	2	144	1	0	0	0	0	1	0	0	0	10075	943	33	4	565	4	MUC7	4	71347020	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	8747951	71347020	119807256	197	124207											
AFP	174	broad.mit.edu	37	chr4	74308075	74308075	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctacaattcttctttgggCtgctcgctatgacaaaataa	6	10	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74308075	G	G	74308075	3	3	144	1	0	0	0	0	1	0	0	0	363	797	28	4	563	4	AFP	4	74308075	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2961055	74308075	116846201	198	124208											
SDAD1	55153	broad.mit.edu	37	chr4	76878415	76878415	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attctgtggctatacaagttCtggcttatgtttcattttat	7	6	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76878415	G	G	76878415	1	3	144	0	1	0	0	0	0	0	0	0	14063	928	32	4		4	SDAD1	4	76878415	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2570340	76878415	114275861	199	124209											
SHROOM3	57619	broad.mit.edu	37	chr4	77660856	77660856	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcagggagcatgcaacaaGatggctaccattgatgagaa	11	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77660856	A	A	77660856	2	1	144	1	0	0	0	0	0	0	0	1	14408	933	33	4		4	SHROOM3	4	77660856	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	782441	77660856	113493420	200	124210											
COPS4	51138	broad.mit.edu	37	chr4	83977994	83977994	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acggtaccagaatatatatcAggaaaaaacaacatatcttc	5	8	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83977994	T	T	83977994	1	4	144	0	1	0	0	0	0	0	0	0	3767	203	7	5		5	COPS4	4	83977994	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	6317138	83977994	107176282	201	124211											
EMCN	51705	broad.mit.edu	37	chr4	101331503	101331503	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttggtttttccttgtgcaGagtgctcacctgagaacaga	10	9	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101331503	C	C	101331503	3	2	144	1	0	0	0	0	1	0	0	0	5128	942	33	4	28	4	EMCN	4	101331503	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	17353509	101331503	89822773	202	124212											
NHEDC1	150159	broad.mit.edu	37	chr4	103806449	103806449	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgcagttcgtccattcctCccgaagaagaaacaacagaa	7	12	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103806449	T	T	103806449	3	4	144	1	0	0	0	0	1	0	0	0	10495	864	30	4	62	4	NHEDC1	4	103806449	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2474946	103806449	87347827	203	124213											
ARSJ	79642	broad.mit.edu	37	chr4	114824400	114824400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcggtagtgttcgaaatacCtgccaggagcttgcagtggt	13	8	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114824400	A	A	114824400	3	1	144	1	0	0	0	0	1	0	0	0	999	681	24	2	973	2	ARSJ	4	114824400	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	11017951	114824400	76329876	204	124214											
NDST3	9348	broad.mit.edu	37	chr4	118975516	118975516	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctggaatcgaagccttctaGataaatactgtgtagaatat	8	7	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118975516	A	A	118975516	3	1	144	1	0	0	0	0	1	0	0	0	10352	942	33	4	453	4	NDST3	4	118975516	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	4151116	118975516	72178760	205	124215											
NDST3	9348	broad.mit.edu	37	chr4	119114864	119114864	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtgggcctctccccaaTggaagaggcccttctcgttg	12	14	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119114864	C	C	119114864	1	2	144	0	1	0	0	0	0	0	0	0	10352	1479	51	5		5	NDST3	4	119114864	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	139348	119114864	72039412	206	124216											
USP53	54532	broad.mit.edu	37	chr4	120213799	120213799	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcatccagcaacaaaatatCatggatcaatgttactttga	5	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120213799	G	G	120213799	3	3	144	1	0	0	0	0	1	0	0	0	17211	816	29	4	2713	4	USP53	4	120213799	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1098935	120213799	70940477	207	124217											
RNF175	285533	broad.mit.edu	37	chr4	154633588	154633588	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatatatccccagaaacattCaagataatctcttataacct	2	10	2	2	rs35099009		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154633588	T	T	154633588	1	4	144	0	1	0	0	0	0	0	0	0	13574	841	29	4		4	RNF175	4	154633588	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	34419789	154633588	36520688	208	124218											
RAPGEF2	9693	broad.mit.edu	37	chr4	160266332	160266332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcataaaaagcgggtacGtcgtagttcctttctcaatg	10	8	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160266332	T	T	160266332	3	4	144	1	0	0	0	0	1	0	0	0	13152	1145	40	3	2940	3	RAPGEF2	4	160266332	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	5632744	160266332	30887944	209	124219											
BRD9	65980	broad.mit.edu	37	chr5	881276	881276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagagcaggctcccgtcccCgttcctcttcagatagccca	9	16	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	881276	A	A	881276	3	1	144	1	0	0	0	0	1	0	0	0	1516	652	23	1	837	1	BRD9	5	881276	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08		881276	180033984	210	124220											
ADCY2	108	broad.mit.edu	37	chr5	7707764	7707764	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcatgagcaaatagaaaccTttcttcacacttatcctttt	3	10	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7707764	A	A	7707764	1	1	144	0	1	0	0	0	0	0	0	0	294	1624	56	5		5	ADCY2	5	7707764	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	6826488	7707764	173207496	211	124221											
CDH12	1010	broad.mit.edu	37	chr5	21883446	21883446	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatgttctgttgagtgaaaaGaaaatttctagtgtccagtc	9	5	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883446	A	A	21883446	1	1	144	0	1	0	0	0	0	0	0	0	3128	957	33	4		4	CDH12	5	21883446	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	14175682	21883446	159031814	212	124222											
CDH6	1004	broad.mit.edu	37	chr5	31316422	31316422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacttttgtctgtgaaaaaGcaaaggcagatcaggtgagt	11	5	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31316422	T	T	31316422	3	4	144	1	0	0	0	0	1	0	0	0	3144	971	34	3	1528	3	CDH6	5	31316422	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	9432976	31316422	149598838	213	124223											
AGXT2	64902	broad.mit.edu	37	chr5	35010148	35010148	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctatcatgagacctttgcctCggacgtctccaacaatttca	6	13	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35010148	T	T	35010148	3	4	144	1	0	0	0	0	1	0	0	0	405	884	31	4	261	4	AGXT2	5	35010148	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3693726	35010148	145905112	214	124224											
SPEF2	79925	broad.mit.edu	37	chr5	35771819	35771819	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaataaaaaagtcaaaaagGagccacccaagaaaaaacag	6	8	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35771819	T	T	35771819	4	4	144	1	0	0	0	0	0	1	0	0	15153	1175	41	3	4037	3	SPEF2	5	35771819	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	761671	35771819	145143441	215	124225											
WDR70	55100	broad.mit.edu	37	chr5	37379349	37379349	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaggcgccgctcttggcttCggcggcgccgctgtagcttg	16	13	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37379349	T	T	37379349	1	4	144	0	1	0	0	0	0	0	0	0	17448	899	31	4		4	WDR70	5	37379349	5'Flank	SNP	C	TCGA-49-6742-01A-11D-1855-08	1607530	37379349	143535911	216	124226											
DDX4	54514	broad.mit.edu	37	chr5	55056114	55056114	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggaaacagaggtaagcatCtttgtctttccttaatctcc	7	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55056114	T	T	55056114	1	4	144	0	1	0	0	0	0	0	0	0	4393	928	32	4		4	DDX4	5	55056114	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	17676765	55056114	125859146	217	124227											
ADAMTS6	11174	broad.mit.edu	37	chr5	64569327	64569327	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatagagtcatgtccaattcTtccataaaatacacttacag	4	9	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64569327	A	A	64569327	1	1	144	0	1	0	0	0	0	0	0	0	270	1624	56	5		5	ADAMTS6	5	64569327	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	9513213	64569327	116345933	218	124228											
ADAMTS6	11174	broad.mit.edu	37	chr5	64747409	64747409	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccatttacagaagctatcGagggacttgtctgcatggtg	12	8	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64747409	A	A	64747409	2	1	144	1	0	0	0	0	0	0	0	1	270	1045	37	4		4	ADAMTS6	5	64747409	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	178082	64747409	116167851	219	124229											
GCNT4	51301	broad.mit.edu	37	chr5	74325767	74325767	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagagtcgtctcacattTagaagctttaacaaagagag	10	6	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74325767	C	C	74325767	2	2	144	1	0	0	0	0	0	0	0	1	6365	1741	61	5		5	GCNT4	5	74325767	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	9578358	74325767	106589493	220	124230											
PAPD4	167153	broad.mit.edu	37	chr5	78981148	78981148	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaataaagaacaatagtttCatcataatacattatgttta	4	4	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78981148	T	T	78981148	1	4	144	0	1	0	0	0	0	0	0	0	11518	841	29	4		4	PAPD4	5	78981148	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	4655381	78981148	101934112	221	124231											
THBS4	7060	broad.mit.edu	37	chr5	79378926	79378926	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatccctgaggacttccaaGagtttcaaacccagaatttc	6	13	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79378926	A	A	79378926	3	1	144	1	0	0	0	0	1	0	0	0	15979	943	33	4	2934	4	THBS4	5	79378926	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	397778	79378926	101536334	222	124232											
ACOT12	134526	broad.mit.edu	37	chr5	80638479	80638479	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggattatgcaaatacctgGaagtgtcctaccttttccac	7	10	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80638479	T	T	80638479	1	4	144	0	1	0	0	0	0	0	0	0	150	1189	41	3		3	ACOT12	5	80638479	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1259553	80638479	100276781	223	124233											
NR2F1	7025	broad.mit.edu	37	chr5	92929473	92929473	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggtaggtaaaacccccatCgaaactctcatccgcgatat	7	12	1	0	rs138827038	byFrequency	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92929473	T	T	92929473	2	4	144	1	0	0	0	0	0	0	0	1	10722	874	31	4		4	NR2F1	5	92929473	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	12290994	92929473	87985787	224	124234											
TTC37	9652	broad.mit.edu	37	chr5	94842559	94842559	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtattctaggaactagtCagcatatcagcagtcccata	7	11	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94842559	T	T	94842559	1	4	144	0	1	0	0	0	0	0	0	0	16831	841	29	4		4	TTC37	5	94842559	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1913086	94842559	86072701	225	124235											
SPATA9	83890	broad.mit.edu	37	chr5	94994632	94994632	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactgcctatacaataaaaaGagtttgtaaagtgaagtttc	8	5	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94994632	C	C	94994632	1	2	144	0	1	0	0	0	0	0	0	0	15132	957	33	4		4	SPATA9	5	94994632	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	152073	94994632	85920628	226	124236											
ZCCHC10	54819	broad.mit.edu	37	chr5	132339027	132339027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgaatgtggattacagCaaattgaagaaagaaggttc	11	4	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132339027	A	A	132339027	1	1	144	0	1	0	0	0	0	0	0	0	17705	725	25	3		3	ZCCHC10	5	132339027	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	37344395	132339027	48576233	227	124237											
SKP1	6500	broad.mit.edu	37	chr5	133502893	133502893	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctgcattcacatttggtaGaggaactgggtcatcatctc	10	9	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133502893	C	C	133502893	3	2	144	1	0	0	0	0	1	0	0	0	14474	933	33	4	395	4	SKP1	5	133502893	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1163866	133502893	47412367	228	124238											
IK	3550	broad.mit.edu	37	chr5	140041719	140041719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttgggcctcaggtgagCttagatgggcagcttggtga	16	8	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140041719	A	A	140041719	1	1	144	0	1	0	0	0	0	0	0	0	7678	812	28	3		3	IK	5	140041719	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	6538826	140041719	40873541	229	124239											
HARS2	23438	broad.mit.edu	37	chr5	140073516	140073516	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actatggctgcttttggtttCcagggtaccagggatcttag	12	8	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140073516	A	A	140073516	1	1	144	0	1	0	0	0	0	0	0	0	7026	870	30	3		3	HARS2	5	140073516	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	31797	140073516	40841744	230	124240											
PCDHA11	56138	broad.mit.edu	37	chr5	140249821	140249821	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcgtgtctgaccgtgactCaggtgtcaacggacaggtga	14	10	3	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140249821	T	T	140249821	3	4	144	1	0	0	0	0	1	0	0	0	11615	838	29	4	1135	4	PCDHA11	5	140249821	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	176305	140249821	40665439	231	124241											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719744	140719744	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcagtagacaattactaCcgactggttacaaccagagc	8	10	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140719744	A	A	140719744	4	1	144	1	0	0	0	0	0	1	0	0	11648	518	18	3	1208	3	PCDHGA2	5	140719744	Nonsense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	469923	140719744	40195516	232	124242											
DIAPH1	1729	broad.mit.edu	37	chr5	140907993	140907993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatgcagagacttttgggCtctagcttcattccaaactg	8	12	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140907993	A	A	140907993	1	1	144	0	1	0	0	0	0	0	0	0	4558	812	28	3		3	DIAPH1	5	140907993	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	188249	140907993	40007267	233	124243											
STK32A	202374	broad.mit.edu	37	chr5	146722497	146722497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagttagctttcttaagcCtttttgcccctaccccttag	5	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146722497	A	A	146722497	1	1	144	0	1	0	0	0	0	0	0	0	15415	696	24	2		2	STK32A	5	146722497	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	5814504	146722497	34192763	234	124244											
DPYSL3	1809	broad.mit.edu	37	chr5	146785353	146785353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcaaactggtggctccCacctccacgaactgtgagga	9	15	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146785353	A	A	146785353	1	1	144	0	1	0	0	0	0	0	0	0	4788	609	21	2		2	DPYSL3	5	146785353	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	62856	146785353	34129907	235	124245											
ARHGEF37	389337	broad.mit.edu	37	chr5	148980854	148980854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggaactgttctcagcgaGtggtcactgcttaactgtct	10	10	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148980854	T	T	148980854	1	4	144	0	1	0	0	0	0	0	0	0	908	1044	36	3		3	ARHGEF37	5	148980854	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2195501	148980854	31934406	236	124246											
PPARGC1B	133522	broad.mit.edu	37	chr5	149214257	149214257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctcccaggtgcctcatgCtggccttgtcacaaaggtag	10	13	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149214257	A	A	149214257	3	1	144	1	0	0	0	0	1	0	0	0	12397	796	28	3	1755	3	PPARGC1B	5	149214257	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	233403	149214257	31701003	237	124247											
NDST1	3340	broad.mit.edu	37	chr5	149915212	149915212	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggggggataaggcccAaaggggaaggacccctatgc	15	9	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149915212	T	T	149915212	1	4	144	0	1	0	0	0	0	0	0	0	10350	145	5	5		5	NDST1	5	149915212	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	700955	149915212	31000048	238	124248											
FAT2	2196	broad.mit.edu	37	chr5	150925373	150925373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgatcatgctatacagtGgagctgcttcactaatttgg	9	9	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150925373	T	T	150925373	3	4	144	1	0	0	0	0	1	0	0	0	5747	1348	47	2	7794	2	FAT2	5	150925373	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1010161	150925373	29989887	239	124249											
GRIA1	2890	broad.mit.edu	37	chr5	152870470	152870470	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcacatttttgccttcTtctgcaccggtttcctaggc	8	13	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152870470	C	C	152870470	3	2	144	1	0	0	0	0	1	0	0	0	6833	1609	56	5	24	5	GRIA1	5	152870470	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	1945097	152870470	28044790	240	124250											
ADAM19	8728	broad.mit.edu	37	chr5	156916250	156916250	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgatgttcagcaggggacaGtgcctgagttccctttgacc	12	11	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156916250	A	A	156916250	1	1	144	0	1	0	0	0	0	0	0	0	240	1044	36	4		4	ADAM19	5	156916250	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4045780	156916250	23999010	241	124251											
ATP10B	23120	broad.mit.edu	37	chr5	160047786	160047786	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacagatgcatcatctctctCatccgagtctgtggtggcca	9	13	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160047786	T	T	160047786	3	4	144	1	0	0	0	0	1	0	0	0	1121	835	29	4	2449	4	ATP10B	5	160047786	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3131536	160047786	20867474	242	124252											
GABRG2	2566	broad.mit.edu	37	chr5	161580236	161580236	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttttttctgctgttttgaAgattgtcgaacaggagcttg	11	5	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161580236	C	C	161580236	3	2	144	1	0	0	0	0	1	0	0	0	6232	69	3	5	1452	5	GABRG2	5	161580236	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	1532450	161580236	19335024	243	124253											
ODZ2	57451	broad.mit.edu	37	chr5	167420063	167420063	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgccccgcctgctgcccagGaatactttctccaggaaggc	10	17	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167420063	A	A	167420063	2	1	144	1	0	0	0	0	0	0	0	1	10930	1165	41	4		4	ODZ2	5	167420063	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	5839827	167420063	13495197	244	124254											
DOCK2	1794	broad.mit.edu	37	chr5	169111353	169111353	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaagcaaacggtcataAggtaggtgtgtccagggttg	13	8	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169111353	C	C	169111353	3	2	144	1	0	0	0	0	1	0	0	0	4727	86	3	5	790	5	DOCK2	5	169111353	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	1691290	169111353	11803907	245	124255											
DOCK2	1794	broad.mit.edu	37	chr5	169508967	169508967	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acactcacacggaagaaggtCaatcagttcttcaagacaat	7	10	5	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169508967	A	A	169508967	2	1	144	1	0	0	0	0	0	0	0	1	4727	813	29	3		3	DOCK2	5	169508967	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	397614	169508967	11406293	246	124256											
RAB24	53917	broad.mit.edu	37	chr5	176729837	176729837	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagcctgctgtgtcctaaaGagtaaggcctgagtcaaact	11	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176729837	C	C	176729837	1	2	144	0	1	0	0	0	0	0	0	0	13019	957	33	4		4	RAB24	5	176729837	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	7220870	176729837	4185423	247	124257											
GFPT2	9945	broad.mit.edu	37	chr5	179751151	179751151	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaggcattctttgattatGtaatcccaggaagcgaagag	11	7	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179751151	A	A	179751151	1	1	144	0	1	0	0	0	0	0	0	0	6410	1392	48	4		4	GFPT2	5	179751151	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	3021314	179751151	1164109	248	124258											
BTN3A1	11119	broad.mit.edu	37	chr6	26409614	26409614	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcttacccactgtcctctGagattttagcatgagaaaga	8	9	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26409614	C	C	26409614	1	2	144	0	1	0	0	0	0	0	0	0	1572	1305	45	4		4	BTN3A1	6	26409614	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08		26409614	144705453	249	124259											
MDC1	9656	broad.mit.edu	37	chr6	30672360	30672360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggctggagctcaggggCtgcgggcacaactgtttcag	17	9	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30672360	A	A	30672360	3	1	144	1	0	0	0	0	1	0	0	0	9496	797	28	3	1693	3	MDC1	6	30672360	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	4262746	30672360	140442707	250	124260											
ZBTB12	221527	broad.mit.edu	37	chr6	31868936	31868936	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgagcaggcggccaagatGaccttgtggcctcgaaactt	14	10	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31868936	A	A	31868936	2	1	144	1	0	0	0	0	0	0	0	1	17651	1277	45	4		4	ZBTB12	6	31868936	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1196576	31868936	139246131	251	124261											
ITPR3	3710	broad.mit.edu	37	chr6	33644915	33644916	+	Intron	INS	-	T	T													atctgcagccccagtggtccINStgggggctcccgctggcccg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33644916	T	T	33644915	6	5	144	0	1	1	1	0	0	0	0	0	7992	696	24	0		0	ITPR3	6	33644915	Intron	INS	-	TCGA-49-6742-01A-11D-1855-08	1775979	33644915	137470152	252	124262											
PACSIN1	29993	broad.mit.edu	37	chr6	34496627	34496627	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatggcttccgcaaggcccaGaagccttgggccaagaagat	13	11	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34496627	C	C	34496627	3	2	144	1	0	0	0	0	1	0	0	0	11468	933	33	4	439	4	PACSIN1	6	34496627	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	851712	34496627	136618440	253	124263											
LHFPL5	222662	broad.mit.edu	37	chr6	35773660	35773660	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctactgcgtgggtaaCgtgctgtcctccgagctcat	10	13	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35773660	T	T	35773660	2	4	144	1	0	0	0	0	0	0	0	1	8840	535	19	4		4	LHFPL5	6	35773660	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1277033	35773660	135341407	254	124264											
BRPF3	27154	broad.mit.edu	37	chr6	36178346	36178346	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggaggagaggggccaggagGaggcacaggaacagagtcta	20	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36178346	A	A	36178346	1	1	144	0	1	0	0	0	0	0	0	0	1530	1189	41	4		4	BRPF3	6	36178346	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	404686	36178346	134936721	255	124265											
SFRS3	6428	broad.mit.edu	37	chr6	36569000	36569000	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttttggctacgttcttaGaaatggcagtgtttctgcta	9	7	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36569000	T	T	36569000	1	4	144	0	1	0	0	0	0	0	0	0	14291	957	33	3		3	SFRS3	6	36569000	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	390654	36569000	134546067	256	124266											
DNAH8	1769	broad.mit.edu	37	chr6	38747797	38747797	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaataaaccacacaatagagCgtattcttcagtactatgtg	6	8	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38747797	T	T	38747797	3	4	144	1	0	0	0	0	1	0	0	0	4647	768	27	4	1486	4	DNAH8	6	38747797	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2178797	38747797	132367270	257	124267											
MOCS1	4337	broad.mit.edu	37	chr6	39881218	39881218	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggctgtgccccctgcattCttttgtggagatgacccttg	12	11	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39881218	T	T	39881218	1	4	144	0	1	0	0	0	0	0	0	0	9784	928	32	4		4	MOCS1	6	39881218	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1133421	39881218	131233849	258	124268											
C6orf130	221443	broad.mit.edu	37	chr6	41036604	41036604	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcatggagaggtcagtgactCcattcttcagacaatgagac	11	9	3	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41036604	T	T	41036604	3	4	144	1	0	0	0	0	1	0	0	0	2352	855	30	4	134	4	C6orf130	6	41036604	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1155386	41036604	130078463	259	124269											
UBR2	23304	broad.mit.edu	37	chr6	42657311	42657311	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgatctctctacagagtaCgggaatgtcaggtgctattt	10	8	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42657311	G	G	42657311	3	3	144	1	0	0	0	0	1	0	0	0	17028	527	19	4	5357	4	UBR2	6	42657311	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1620707	42657311	128457756	260	124270											
POLH	5429	broad.mit.edu	37	chr6	43582054	43582054	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgaggaccaagtgccCtgtgagaagtgtggctccct	14	11	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43582054	A	A	43582054	2	1	144	1	0	0	0	0	0	0	0	1	12297	668	24	2		2	POLH	6	43582054	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	924743	43582054	127533013	261	124271											
TMEM63B	55362	broad.mit.edu	37	chr6	44102978	44102978	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatgtgggcatgggggcatGagggccctaagttgggcccc	17	10	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44102978	C	C	44102978	1	2	144	0	1	0	0	0	0	0	0	0	16314	1305	45	4		4	TMEM63B	6	44102978	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	520924	44102978	127012089	262	124272											
PKHD1	5314	broad.mit.edu	37	chr6	51656001	51656001	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcacagaatataattctCaacatgctcgcaatccttgt	4	11	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51656001	G	G	51656001	1	3	144	0	1	0	0	0	0	0	0	0	12066	841	29	4		4	PKHD1	6	51656001	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	7553023	51656001	119459066	263	124273											
TRAM2	9697	broad.mit.edu	37	chr6	52370505	52370505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagggtgaggatgaagaggCgggtaaccccaaaaacagca	14	8	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52370505	A	A	52370505	3	1	144	1	0	0	0	0	1	0	0	0	16577	768	27	3	357	3	TRAM2	6	52370505	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	714504	52370505	118744562	264	124274											
GFRAL	389400	broad.mit.edu	37	chr6	55264023	55264023	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggcatggcattgtatacaaGaaaacatgcaaacaaaatca	7	7	1	1	rs137898068		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55264023	C	C	55264023	3	2	144	1	0	0	0	0	1	0	0	0	6415	942	33	4	1024	4	GFRAL	6	55264023	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	2893518	55264023	115851044	265	124275											
FAM135A	57579	broad.mit.edu	37	chr6	71238227	71238227	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatagatctcatttagtttCatttagtctttgaactaaaa	4	5	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71238227	T	T	71238227	1	4	144	0	1	0	0	0	0	0	0	0	5494	841	29	4		4	FAM135A	6	71238227	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	15974204	71238227	99876840	266	124276											
FAM135A	57579	broad.mit.edu	37	chr6	71248050	71248050	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcttttgcagctgacatgtCgagatcactcagaccctcgc	9	14	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71248050	G	G	71248050	3	3	144	1	0	0	0	0	1	0	0	0	5494	876	31	4	4322	4	FAM135A	6	71248050	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	9823	71248050	99867017	267	124277											
KCNQ5	56479	broad.mit.edu	37	chr6	73332391	73332391	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctggggcgtgctccgcgctCgcgcccttgggcccccgcgc	15	20	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73332391	G	G	73332391	1	3	144	0	1	0	0	0	0	0	0	0	8156	899	31	4		4	KCNQ5	6	73332391	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2084341	73332391	97782676	268	124278											
CASP8AP2	9994	broad.mit.edu	37	chr6	90566859	90566859	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaatatttcagcacttatCaaaactgccagagtggaaat	7	7	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90566859	G	G	90566859	3	3	144	1	0	0	0	0	1	0	0	0	2704	816	29	4	375	4	CASP8AP2	6	90566859	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	17234468	90566859	80548208	269	124279											
C6orf168	84553	broad.mit.edu	37	chr6	99796915	99796915	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctggcacgggcccctctCgcgccagccctgccctagcc	13	20	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99796915	T	T	99796915	1	4	144	0	1	0	0	0	0	0	0	0	2366	899	31	4		4	C6orf168	6	99796915	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	9230056	99796915	71318152	270	124280											
TSPYL1	7259	broad.mit.edu	37	chr6	116601142	116601142	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggagatctcacggtatcgcGagaacttgctgagcccggga	14	10	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116601142	C	C	116601142	1	2	144	0	1	0	0	0	0	0	0	0	16784	1073	37	4		4	TSPYL1	6	116601142	5'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	16804227	116601142	54513925	271	124281											
C6orf170	221322	broad.mit.edu	37	chr6	121402010	121402010	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtattcaaaataatcactCactcgaaacccatgcagtgc	5	11	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121402010	T	T	121402010	2	4	144	1	0	0	0	0	0	0	0	1	2367	813	29	4		4	C6orf170	6	121402010	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	4800868	121402010	49713057	272	124282											
ECHDC1	55862	broad.mit.edu	37	chr6	127636021	127636021	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcccaaccttgaaccagcGcaacacttattaaaggaagt	7	11	0	1	rs146146402		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127636021	A	A	127636021	3	1	144	1	0	0	0	0	1	0	0	0	4933	1088	38	4	476	4	ECHDC1	6	127636021	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	6234011	127636021	43479046	273	124283											
MAP3K5	4217	broad.mit.edu	37	chr6	136923207	136923207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataacttgaccccccaatgCaacaagatcccttatcatac	3	15	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136923207	A	A	136923207	1	1	144	0	1	0	0	0	0	0	0	0	9345	725	25	3		3	MAP3K5	6	136923207	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	9287186	136923207	34191860	274	124284											
OLIG3	167826	broad.mit.edu	37	chr6	137815158	137815158	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagaggctttccccgggcatCttctgcatcatatcgccctg	10	14	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137815158	T	T	137815158	2	4	144	1	0	0	0	0	0	0	0	1	10956	912	32	4		4	OLIG3	6	137815158	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	891951	137815158	33299909	275	124285											
SHPRH	257218	broad.mit.edu	37	chr6	146264343	146264343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacccactggtgacagatgGaacttggagagatgatcaga	12	9	1	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146264343	T	T	146264343	3	4	144	1	0	0	0	0	1	0	0	0	14404	1174	41	3	3009	3	SHPRH	6	146264343	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	8449185	146264343	24850724	276	124286											
GRM1	2911	broad.mit.edu	37	chr6	146720735	146720735	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagtgccttcaccacctctGatgttgtccgcatgcatgtt	9	13	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146720735	A	A	146720735	3	1	144	1	0	0	0	0	1	0	0	0	6862	1290	45	4	2586	4	GRM1	6	146720735	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	456392	146720735	24394332	277	124287											
RBM16	22828	broad.mit.edu	37	chr6	155145280	155145280	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagtatttgttaccatcctGaaagagaaatagaataattt	7	4	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155145280	C	C	155145280	1	2	144	0	1	0	0	0	0	0	0	0	13226	1305	45	4		4	RBM16	6	155145280	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	8424545	155145280	15969787	278	124288											
SYNJ2	8871	broad.mit.edu	37	chr6	158509831	158509831	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcttctgcatacatttcaatCccaagggttttgcccccggg	8	13	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158509831	T	T	158509831	1	4	144	0	1	0	0	0	0	0	0	0	15572	870	30	4		4	SYNJ2	6	158509831	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	3364551	158509831	12605236	279	124289											
TAGAP	117289	broad.mit.edu	37	chr6	159464545	159464545	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattcctagtagagtaaaAgcgctgtggttttgcaaacc	9	7	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159464545	G	G	159464545	1	3	144	0	1	0	0	0	0	0	0	0	15656	87	3	5		5	TAGAP	6	159464545	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	954714	159464545	11650522	280	124290											
DLL1	28514	broad.mit.edu	37	chr6	170598011	170598011	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctggggcagcgtgtctggaGagggtctccacgcacctcct	14	13	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170598011	A	A	170598011	1	1	144	0	1	0	0	0	0	0	0	0	4606	957	33	4		4	DLL1	6	170598011	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	11133466	170598011	517056	281	124291											
HEATR2	54919	broad.mit.edu	37	chr7	808794	808794	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctgctctgatgactggcGgcgccagggagaaggctcac	15	12	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	808794	A	A	808794	1	1	144	0	1	0	0	0	0	0	0	0	7095	1131	39	4		4	HEATR2	7	808794	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08		808794	158329869	282	124292											
CARD11	84433	broad.mit.edu	37	chr7	2946328	2946328	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctcctcgccgatcttgtCcttgacaacgcggagcagct	10	15	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2946328	T	T	2946328	3	4	144	1	0	0	0	0	1	0	0	0	2671	855	30	4	59	4	CARD11	7	2946328	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2137534	2946328	156192335	283	124293											
FBXL18	80028	broad.mit.edu	37	chr7	5540616	5540616	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcggtcggcgcgcggcgcGgagtcagcgacagagcagac	19	13	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5540616	A	A	5540616	2	1	144	1	0	0	0	0	0	0	0	1	5771	1103	39	4		4	FBXL18	7	5540616	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	2594288	5540616	153598047	284	124294											
PHF14	9678	broad.mit.edu	37	chr7	11068332	11068332	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagcttttgtgaagaccctCgctttgctagaactggggtt	12	8	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11068332	T	T	11068332	3	4	144	1	0	0	0	0	1	0	0	0	11920	884	31	4	1368	4	PHF14	7	11068332	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	5527716	11068332	148070331	285	124295											
RAPGEF5	9771	broad.mit.edu	37	chr7	22206804	22206804	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaacacaaggtaagcaaaGaggtggataagaagagcagc	12	6	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22206804	C	C	22206804	1	2	144	0	1	0	0	0	0	0	0	0	13155	957	33	4		4	RAPGEF5	7	22206804	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	11138472	22206804	136931859	286	124296											
KLHL7	55975	broad.mit.edu	37	chr7	23164582	23164582	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaattttgtgtttaatttCaggggctattaggatacatt	8	3	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23164582	T	T	23164582	1	4	144	0	1	0	0	0	0	0	0	0	8465	841	29	4		4	KLHL7	7	23164582	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	957778	23164582	135974081	287	124297											
FAM188B	84182	broad.mit.edu	37	chr7	30825111	30825111	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctttagtcttaaggacttGaggggtcctgttatggatca	11	7	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30825111	C	C	30825111	1	2	144	0	1	0	0	0	0	0	0	0	5561	1305	45	4		4	FAM188B	7	30825111	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	7660529	30825111	128313552	288	124298											
FAM188B	84182	broad.mit.edu	37	chr7	30825162	30825162	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttgtttgcttgtttactgGtcttattttatagggcagac	9	5	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30825162	C	C	30825162	1	2	144	0	1	0	0	0	0	0	0	0	5561	1276	44	4		4	FAM188B	7	30825162	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	51	30825162	128313501	289	124299											
AQP1	358	broad.mit.edu	37	chr7	30963079	30963079	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctagattttctgggtgggGccattcatcgggggagccct	14	10	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30963079	A	A	30963079	2	1	144	1	0	0	0	0	0	0	0	1	823	1190	42	4		4	AQP1	7	30963079	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	137917	30963079	128175584	290	124300											
PDE1C	5137	broad.mit.edu	37	chr7	31855500	31855500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcattatgtcattaatgCcgcgaaaagagcccttcacc	6	12	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31855500	A	A	31855500	1	1	144	0	1	0	0	0	0	0	0	0	11729	754	26	3		3	PDE1C	7	31855500	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	892421	31855500	127283163	291	124301											
BBS9	27241	broad.mit.edu	37	chr7	33427662	33427662	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagagagctgtacaatttcGggccattcaacgccggctac	11	11	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33427662	A	A	33427662	3	1	144	1	0	0	0	0	1	0	0	0	1347	1116	39	4	2091	4	BBS9	7	33427662	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1572162	33427662	125711001	292	124302											
VPS41	27072	broad.mit.edu	37	chr7	38766411	38766411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgtaatttttttttaaCccatacagccataaggatga	5	7	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38766411	A	A	38766411	1	1	144	0	1	0	0	0	0	0	0	0	17337	522	18	3		3	VPS41	7	38766411	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	5338749	38766411	120372252	293	124303											
GLI3	2737	broad.mit.edu	37	chr7	42153126	42153126	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaaagggaaaaagggaaaAgctgatgctggcaaggaggg	16	6	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42153126	C	C	42153126	1	2	144	0	1	0	0	0	0	0	0	0	6503	87	3	5		5	GLI3	7	42153126	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	3386715	42153126	116985537	294	124304											
SUN3	256979	broad.mit.edu	37	chr7	48033980	48033980	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caccttctctgagatgtgctCcatggtaacagcagttggta	10	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48033980	G	G	48033980	3	3	144	1	0	0	0	0	1	0	0	0	15511	864	30	4	292	4	SUN3	7	48033980	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	5880854	48033980	111104683	295	124305											
SUN3	256979	broad.mit.edu	37	chr7	48035654	48035654	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataatatctggaggcatttCatgatttaggaaacctatcc	7	7	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48035654	T	T	48035654	3	4	144	1	0	0	0	0	1	0	0	0	15511	835	29	4	422	4	SUN3	7	48035654	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1674	48035654	111103009	296	124306											
IKZF1	10320	broad.mit.edu	37	chr7	50455159	50455159	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggccttccgggcacaCtgtacccaggtaagcgctgc	13	14	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50455159	G	G	50455159	3	3	144	1	0	0	0	0	1	0	0	0	7684	564	20	4	724	4	IKZF1	7	50455159	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2419505	50455159	108683504	297	124307											
POM121L12	285877	broad.mit.edu	37	chr7	53103781	53103781	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acctggagcccggtgaccatCgggatcgcgccccctgagcg	14	16	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53103781	G	G	53103781	3	3	144	1	0	0	0	0	1	0	0	0	12336	874	31	4	419	4	POM121L12	7	53103781	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2648622	53103781	106034882	298	124308											
ZP3	7784	broad.mit.edu	37	chr7	76058924	76058924	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgaggactaaccgcgcagaGattcccatcgagtgccgcta	12	12	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76058924	C	C	76058924	3	2	144	1	0	0	0	0	1	0	0	0	18346	933	33	4	411	4	ZP3	7	76058924	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	22955143	76058924	83079739	299	124309											
ZNF804B	219578	broad.mit.edu	37	chr7	88966042	88966042	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttcagtcctatttcattttCgactctgactccaaccatta	3	12	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88966042	G	G	88966042	3	3	144	1	0	0	0	0	1	0	0	0	18300	893	31	4	3760	4	ZNF804B	7	88966042	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	12907118	88966042	70172621	300	124310											
SAMD9L	219285	broad.mit.edu	37	chr7	92762501	92762501	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtcagtaacataagagctGagtaaagccaggaaggaaat	12	5	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92762501	A	A	92762501	2	1	144	1	0	0	0	0	0	0	0	1	13938	1277	45	4		4	SAMD9L	7	92762501	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	3796459	92762501	66376162	301	124311											
PTCD1	26024	broad.mit.edu	37	chr7	99022694	99022694	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccagtagcgtgagggtcctGatgtcgggctgctgcctgtg	17	10	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99022694	A	A	99022694	2	1	144	1	0	0	0	0	0	0	0	1	12833	1280	45	4		4	PTCD1	7	99022694	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	6260193	99022694	60115969	302	124312											
ATP5J2	9551	broad.mit.edu	37	chr7	99055823	99055823	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatcagcacacgtaccaGtcatgttttatttggaggtt	10	8	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99055823	A	A	99055823	1	1	144	0	1	0	0	0	0	0	0	0	1163	1044	36	4		4	ATP5J2	7	99055823	3'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	33129	99055823	60082840	303	124313											
COPS6	10980	broad.mit.edu	37	chr7	99687059	99687059	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgagtgttgggcatagactCcagtctcttctccttgctca	10	11	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99687059	G	G	99687059	1	3	144	0	1	0	0	0	0	0	0	0	3769	870	30	4		4	COPS6	7	99687059	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	631236	99687059	59451604	304	124314											
COPS6	10980	broad.mit.edu	37	chr7	99687071	99687071	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catagactccagtctcttctCcttgctcacctcccccaggc	5	19	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99687071	T	T	99687071	1	4	144	0	1	0	0	0	0	0	0	0	3769	870	30	4		4	COPS6	7	99687071	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	12	99687071	59451592	305	124315											
GATS	352954	broad.mit.edu	37	chr7	99799776	99799776	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgtccttttaaacatcCtttcttttccccctacaggc	3	14	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99799776	A	A	99799776	1	1	144	0	1	0	0	0	0	0	0	0	6326	696	24	2		2	GATS	7	99799776	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	112705	99799776	59338887	306	124316											
SRRT	51593	broad.mit.edu	37	chr7	100484871	100484871	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcccctggccttggtcctCcagccccttgccaccatcct	7	21	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100484871	T	T	100484871	1	4	144	0	1	0	0	0	0	0	0	0	15290	870	30	4		4	SRRT	7	100484871	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	685095	100484871	58653792	307	124317											
DLD	1738	broad.mit.edu	37	chr7	107556093	107556093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaaatttaaattgaataCaaaggttactggtgctacca	7	5	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107556093	A	A	107556093	3	1	144	1	0	0	0	0	1	0	0	0	4591	478	17	3	861	3	DLD	7	107556093	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	7071222	107556093	51582570	308	124318											
CTTNBP2	83992	broad.mit.edu	37	chr7	117431286	117431286	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtggtaggaatgacaaggGaactgtctgaacatgcaggt	15	5	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117431286	A	A	117431286	3	1	144	1	0	0	0	0	1	0	0	0	4079	1174	41	4	3107	4	CTTNBP2	7	117431286	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	9875193	117431286	41707377	309	124319											
FSCN3	29999	broad.mit.edu	37	chr7	127235473	127235473	+	Frame_Shift_Del	DEL	G	-	-													tggcaccgtgtgttatggccGcccaaggaccagccaccatg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127235473	-	-	127235473	7	5	144	1	0	1	0	1	0	0	0	0	6129	1087	38	0	263	0	FSCN3	7	127235473	Frame_Shift_Del	DEL	G	TCGA-49-6742-01A-11D-1855-08	9804187	127235473	31903190	310	124320											
DGKI	9162	broad.mit.edu	37	chr7	137282598	137282598	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcagggacctaccgttcCatccccaccacaggccagaa	7	18	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137282598	T	T	137282598	3	4	144	1	0	0	0	0	1	0	0	0	4511	603	21	4	1983	4	DGKI	7	137282598	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	10047125	137282598	21856065	311	124321											
PRSS1	5644	broad.mit.edu	37	chr7	142460269	142460269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacttcctttgttctcttcCtgatcctcacagccgactac	4	16	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142460269	A	A	142460269	1	1	144	0	1	0	0	0	0	0	0	0	12720	696	24	2		2	PRSS1	7	142460269	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	5177671	142460269	16678394	312	124322											
TAS2R39	259285	broad.mit.edu	37	chr7	142880452	142880452	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgaatttggaaatgatAcatcaattgcttcctcctat	7	8	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142880452	G	G	142880452	1	3	144	0	1	0	0	0	0	0	0	0	15695	406	14	5		5	TAS2R39	7	142880452	5'Flank	SNP	A	TCGA-49-6742-01A-11D-1855-08	420183	142880452	16258211	313	124323											
AGAP3	116988	broad.mit.edu	37	chr7	150817229	150817229	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagcggcgctccaacatcttCacggtacgtgactgccctcc	9	16	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150817229	T	T	150817229	2	4	144	1	0	0	0	0	0	0	0	1	369	825	29	4		4	AGAP3	7	150817229	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	7936777	150817229	8321434	314	124324											
DLGAP2	9228	broad.mit.edu	37	chr8	1497624	1497624	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacgcgctgcagagccccttCggggacctgtccctcaagac	12	16	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1497624	T	T	1497624	2	4	144	1	0	0	0	0	0	0	0	1	4600	883	31	4		4	DLGAP2	8	1497624	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08		1497624	144866398	315	124325											
TNKS	8658	broad.mit.edu	37	chr8	9623968	9623968	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattagtgtaacgtttcccAcccctaggtcacgaaccaaa	6	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9623968	C	C	9623968	1	2	144	0	1	0	0	0	0	0	0	0	16442	174	6	5		5	TNKS	8	9623968	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	8126344	9623968	136740054	316	124326											
PRSS55	203074	broad.mit.edu	37	chr8	10387085	10387085	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcacaggggggatggaggcgGaggtgggtgagtttccgtgg	22	5	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10387085	C	C	10387085	3	2	144	1	0	0	0	0	1	0	0	0	12740	1175	41	4	229	4	PRSS55	8	10387085	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	763117	10387085	135976937	317	124327											
DOK2	9046	broad.mit.edu	37	chr8	21768239	21768240	+	Nonsense_Mutation	DNP	CC	TA	TA													gccagtcgtacagctgggtcCctggctcgggcccaccccac							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	21768240	TA	TA	21768239	4	4	144	1	0	0	0	0	0	1	0	0	4737	623	22	4	683	4	DOK2	8	21768239	Nonsense_Mutation	DNP	CC	TCGA-49-6742-01A-11D-1855-08	11381154	21768239	124595783	318	124328											
PPP3CC	5533	broad.mit.edu	37	chr8	22368701	22368701	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagtttctctgtgtacatgGaggaatgtcacctgaaatta	10	7	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22368701	A	A	22368701	3	1	144	1	0	0	0	0	1	0	0	0	12500	1174	41	4	605	4	PPP3CC	8	22368701	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	600462	22368701	123995321	319	124329											
ADAM7	8756	broad.mit.edu	37	chr8	24324370	24324370	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccagtgaaatactcagatGagggagaacatttggtgttc	11	6	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24324370	T	T	24324370	4	4	144	1	0	0	0	0	0	1	0	0	251	1291	45	3	470	3	ADAM7	8	24324370	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1955669	24324370	122039652	320	124330											
CCDC25	55246	broad.mit.edu	37	chr8	27598009	27598009	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgatttgaagacatattttCaactttcattagtgatgaat	6	5	2	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27598009	A	A	27598009	4	1	144	1	0	0	0	0	0	1	0	0	2827	835	29	3	57	3	CCDC25	8	27598009	Nonsense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3273639	27598009	118766013	321	124331											
KIF13B	23303	broad.mit.edu	37	chr8	28976370	28976370	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcatctgaccatcccaagTtaggctttccttacctcccc	4	16	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28976370	A	A	28976370	1	1	144	0	1	0	0	0	0	0	0	0	8345	1740	60	5		5	KIF13B	8	28976370	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	1378361	28976370	117387652	322	124332											
TEX15	56154	broad.mit.edu	37	chr8	30704643	30704643	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaccaaaatctggactttCagaagaacaagtttctttaa	5	8	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30704643	T	T	30704643	3	4	144	1	0	0	0	0	1	0	0	0	15901	835	29	4	6494	4	TEX15	8	30704643	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1728273	30704643	115659379	323	124333											
ADAM32	203102	broad.mit.edu	37	chr8	39112006	39112006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgccaaatacgttccaaagGattttccatatttcctgagg	7	10	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39112006	T	T	39112006	3	4	144	1	0	0	0	0	1	0	0	0	249	1174	41	3	2046	3	ADAM32	8	39112006	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	8407363	39112006	107252016	324	124334											
CHRNB3	1142	broad.mit.edu	37	chr8	42581254	42581254	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccttttctttttctctgctCcttctttgccaaaagtgcct	4	14	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42581254	T	T	42581254	1	4	144	0	1	0	0	0	0	0	0	0	3423	870	30	4		4	CHRNB3	8	42581254	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	3469248	42581254	103782768	325	124335											
PRKDC	5591	broad.mit.edu	37	chr8	48805717	48805717	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacctaggacctggagcgctCctacagttctctcgccaatg	9	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48805717	G	G	48805717	3	3	144	1	0	0	0	0	1	0	0	0	12627	864	30	4	8780	4	PRKDC	8	48805717	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	6224463	48805717	97558305	326	124336											
SNTG1	54212	broad.mit.edu	37	chr8	51621571	51621571	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagctctgagaaatatgCtgcaaacattctaattgaag	9	7	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51621571	G	G	51621571	1	3	144	0	1	0	0	0	0	0	0	0	14988	812	28	4		4	SNTG1	8	51621571	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2815854	51621571	94742451	327	124337											
PXDNL	137902	broad.mit.edu	37	chr8	52321922	52321922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccgtcccggtaggctggCtgcagcaggcgcgcgaaggc	17	13	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52321922	A	A	52321922	3	1	144	1	0	0	0	0	1	0	0	0	12956	796	28	3	2157	3	PXDNL	8	52321922	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	700351	52321922	94042100	328	124338											
NSMAF	8439	broad.mit.edu	37	chr8	59512531	59512531	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctttattaactgcttacctCtttaaaatccgttgcaccat	4	11	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59512531	T	T	59512531	3	4	144	1	0	0	0	0	1	0	0	0	10769	922	32	4	1483	4	NSMAF	8	59512531	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	7190609	59512531	86851491	329	124339											
C8orf34	116328	broad.mit.edu	37	chr8	69621318	69621318	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcccagattcattcggtaAgttttaagtccaacaatatt	5	8	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69621318	C	C	69621318	1	2	144	0	1	0	0	0	0	0	0	0	2448	87	3	5		5	C8orf34	8	69621318	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	10108787	69621318	76742704	330	124340											
LACTB2	51110	broad.mit.edu	37	chr8	71556453	71556453	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtagagccatgtgatcatCagtgtggccaggggtatata	14	6	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71556453	T	T	71556453	3	4	144	1	0	0	0	0	1	0	0	0	8670	826	29	4	443	4	LACTB2	8	71556453	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1935135	71556453	74807569	331	124341											
DCAF4L2	138009	broad.mit.edu	37	chr8	88886265	88886265	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagtaagaggaagtaccgcTtctttacaagcacgacttgg	12	8	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88886265	A	A	88886265	1	1	144	1	0	0	0	0	0	0	0	0	4305	1624	56	5		5	DCAF4L2	8	88886265	Translation_Start_Site	SNP	T	TCGA-49-6742-01A-11D-1855-08	17329812	88886265	57477757	332	124342											
SLC26A7	115111	broad.mit.edu	37	chr8	92378836	92378836	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagcaggtgaaaattatctCaataaacaacccgcttgttt	7	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92378836	T	T	92378836	3	4	144	1	0	0	0	0	1	0	0	0	14636	838	29	4	1567	4	SLC26A7	8	92378836	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3492571	92378836	53985186	333	124343											
RIMS2	9699	broad.mit.edu	37	chr8	104709462	104709462	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggatgtggccataactgtTcatattgccaaacaaagttc	8	8	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104709462	C	C	104709462	3	2	144	1	0	0	0	0	1	0	0	0	13479	1783	62	5	331	5	RIMS2	8	104709462	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	12330626	104709462	41654560	334	124344											
EIF3E	3646	broad.mit.edu	37	chr8	109215617	109215617	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagtatgtagcatagctaAcataatactcactaatttag	6	6	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109215617	C	C	109215617	1	2	144	0	1	0	0	0	0	0	0	0	5057	58	2	5		5	EIF3E	8	109215617	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	4506155	109215617	37148405	335	124345											
CSMD3	114788	broad.mit.edu	37	chr8	113316974	113316974	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatatggtctttcatttcTccaactccaagtaccattag	5	11	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113316974	C	C	113316974	3	2	144	1	0	0	0	0	1	0	0	0	3980	1559	54	5	2961	5	CSMD3	8	113316974	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	4101357	113316974	33047048	336	124346											
CSMD3	114788	broad.mit.edu	37	chr8	113347805	113347805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatatatttatattctaacGtatcaataataaagatgcag	5	5	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113347805	T	T	113347805	1	4	144	0	1	0	0	0	0	0	0	0	3980	1160	40	3		3	CSMD3	8	113347805	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	30831	113347805	33016217	337	124347											
TRPS1	7227	broad.mit.edu	37	chr8	116599829	116599829	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttgtagcagctgtgtgctCtcctggagaagaagaaaaca	11	7	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116599829	T	T	116599829	3	4	144	1	0	0	0	0	1	0	0	0	16718	913	32	4	1797	4	TRPS1	8	116599829	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3252024	116599829	29764193	338	124348											
TNFRSF11B	4982	broad.mit.edu	37	chr8	119945543	119945543	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggagatgtccagaaactaGaaggagaaaggaacacagtg	13	5	0	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119945543	A	A	119945543	1	1	144	0	1	0	0	0	0	0	0	0	16408	957	33	4		4	TNFRSF11B	8	119945543	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	3345714	119945543	26418479	339	124349											
OC90	729330	broad.mit.edu	37	chr8	133062114	133062114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgataacgtcttcagctgcCatctttggactgctaagacg	9	10	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133062114	A	A	133062114	3	1	144	1	0	0	0	0	1	0	0	0	10909	609	21	2		2	OC90	8	133062114	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	13116571	133062114	13301908	340	124350											
KHDRBS3	10656	broad.mit.edu	37	chr8	136554916	136554916	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcaactttgtggggaaacTtttgggtccacgtggcaatt	12	7	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136554916	G	G	136554916	3	3	144	1	0	0	0	0	1	0	0	0	8218	1609	56	5	237	5	KHDRBS3	8	136554916	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	3492802	136554916	9809106	341	124351											
KHDRBS3	10656	broad.mit.edu	37	chr8	136638123	136638123	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgagcacagctgttcgatCtttgtcacgttcaactgcag	9	12	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136638123	T	T	136638123	1	4	144	0	1	0	0	0	0	0	0	0	8218	928	32	4		4	KHDRBS3	8	136638123	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	83207	136638123	9725899	342	124352											
BAI1	575	broad.mit.edu	37	chr8	143624735	143624735	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acttgtcagggacccttggcGaatgttcgcaaaccccttct	9	13	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143624735	C	C	143624735	1	2	144	0	1	0	0	0	0	0	0	0	1303	1073	37	4		4	BAI1	8	143624735	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	6986612	143624735	2739287	343	124353											
EXOSC4	54512	broad.mit.edu	37	chr8	145134858	145134858	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccagatccggggctccCgggctcgagccctgccggac	13	17	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145134858	A	A	145134858	2	1	144	1	0	0	0	0	0	0	0	1	5359	643	23	1		1	EXOSC4	8	145134858	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1510123	145134858	1229164	344	124354											
CNTLN	54875	broad.mit.edu	37	chr9	17409351	17409351	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attattgtagaaacatcccaGaaaataagtcctacggaaga	7	7	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17409351	C	C	17409351	3	2	144	1	0	0	0	0	1	0	0	0	3671	933	33	4	2768	4	CNTLN	9	17409351	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08		17409351	123804080	345	124355											
BAG1	573	broad.mit.edu	37	chr9	33264328	33264328	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctcctggctccgattcatCtcttcgccctgggtcgcctc	8	18	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33264328	T	T	33264328	2	4	144	1	0	0	0	0	0	0	0	1	1291	912	32	4		4	BAG1	9	33264328	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	15854977	33264328	107949103	346	124356											
TLN1	7094	broad.mit.edu	37	chr9	35717584	35717584	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtggtagtattacccctCagcacggactagagcaacct	10	11	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35717584	T	T	35717584	1	4	144	0	1	0	0	0	0	0	0	0	16070	841	29	4		4	TLN1	9	35717584	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2453256	35717584	105495847	347	124357											
PTCH1	5727	broad.mit.edu	37	chr9	98242859	98242859	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaagtttgtccaccgcaaaGgaggtttacctctgcaaaag	10	10	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98242859	A	A	98242859	3	1	144	1	0	0	0	0	1	0	0	0	12836	1000	35	4	3657	4	PTCH1	9	98242859	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	62525275	98242859	42970572	348	124358											
C9orf102	375748	broad.mit.edu	37	chr9	98660089	98660089	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgaaattttgtacgtcatGatacattatacacagtgatt	7	5	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98660089	A	A	98660089	1	1	144	0	1	0	0	0	0	0	0	0	2471	1305	45	4		4	C9orf102	9	98660089	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	417230	98660089	42553342	349	124359											
NCBP1	4686	broad.mit.edu	37	chr9	100426740	100426740	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccaggtaatataaattatTttatgaaacttgtgttccct	5	6	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100426740	C	C	100426740	1	2	144	0	1	0	0	0	0	0	0	0	10306	1856	64	5		5	NCBP1	9	100426740	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	1766651	100426740	40786691	350	124360											
GABBR2	9568	broad.mit.edu	37	chr9	101061497	101061497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacattctggggccctggCtctcttacctgtgctctcag	9	15	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101061497	A	A	101061497	1	1	144	0	1	0	0	0	0	0	0	0	6216	812	28	3		3	GABBR2	9	101061497	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	634757	101061497	40151934	351	124361											
CYLC2	1539	broad.mit.edu	37	chr9	105767260	105767260	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatccccagaaattggtaAgaaaggtgaagacaagacaa	9	6	0	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105767260	C	C	105767260	3	2	144	1	0	0	0	0	1	0	0	0	4175	72	3	5	365	5	CYLC2	9	105767260	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	4705763	105767260	35446171	352	124362											
EPB41L4B	54566	broad.mit.edu	37	chr9	112029654	112029654	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgctgagaaatagacaGcagacagaagaagaggcaaa	11	7	1	6			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112029654	A	A	112029654	1	1	144	0	1	0	0	0	0	0	0	0	5198	986	34	4		4	EPB41L4B	9	112029654	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	6262394	112029654	29183777	353	124363											
COL27A1	85301	broad.mit.edu	37	chr9	117027438	117027438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacatggggcttttgatggGggtggggggcgggtgcggtg	23	5	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117027438	T	T	117027438	1	4	144	0	1	0	0	0	0	0	0	0	3717	1247	43	2		2	COL27A1	9	117027438	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4997784	117027438	24185993	354	124364											
PAPPA	5069	broad.mit.edu	37	chr9	118949434	118949434	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttggggccacataggGctgtatgacaaatgttctta	10	8	2	1	rs138083509		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118949434	A	A	118949434	2	1	144	1	0	0	0	0	0	0	0	1	11526	1217	42	4		4	PAPPA	9	118949434	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1921996	118949434	22263997	355	124365											
TLR4	7099	broad.mit.edu	37	chr9	120476246	120476246	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaatgtgcaacaccttcaGataagcagggcatgcctgtg	12	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476246	A	A	120476246	3	1	144	1	0	0	0	0	1	0	0	0	16076	942	33	4	1850	4	TLR4	9	120476246	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1526812	120476246	20737185	356	124366											
TLR4	7099	broad.mit.edu	37	chr9	120476748	120476748	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagaccctgctcaggcAgcaggtggagctgtaccgcc	15	12	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120476748	G	G	120476748	3	3	144	1	0	0	0	0	1	0	0	0	16076	188	7	5	2352	5	TLR4	9	120476748	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	502	120476748	20736683	357	124367											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123233756	123233756	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggattgcaagtgcccagggAtatttggaactagaagtatc	13	6	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123233756	G	G	123233756	1	3	144	0	1	0	0	0	0	0	0	0	3176	348	12	5		5	CDK5RAP2	9	123233756	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	2757008	123233756	17979675	358	124368											
OR5C1	392391	broad.mit.edu	37	chr9	125551304	125551304	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggacctgcgtgtggccctCttcctgacctgcctgcctgt	12	15	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125551304	T	T	125551304	2	4	144	1	0	0	0	0	0	0	0	1	11247	900	32	4		4	OR5C1	9	125551304	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	2317548	125551304	15662127	359	124369											
CDK9	1025	broad.mit.edu	37	chr9	130551617	130551617	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaccctgcccagcgcatcgAcagcgatgacgccctcaacc	10	18	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130551617	C	C	130551617	3	2	144	1	0	0	0	0	1	0	0	0	3181	275	10	5	940	5	CDK9	9	130551617	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	5000313	130551617	10661814	360	124370											
FAM102A	399665	broad.mit.edu	37	chr9	130705590	130705590	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccactggaccaggcctcTggaggtgtttcacaagcagg	13	12	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130705590	C	C	130705590	1	2	144	0	1	0	0	0	0	0	0	0	5428	1595	55	5		5	FAM102A	9	130705590	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	153973	130705590	10507841	361	124371											
PKN3	29941	broad.mit.edu	37	chr9	131481908	131481908	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcataaggcttggctattGaagttattgtgaataggcca	10	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131481908	A	A	131481908	1	1	144	0	1	0	0	0	0	0	0	0	12076	1305	45	4		4	PKN3	9	131481908	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	776318	131481908	9731523	362	124372											
ABL1	25	broad.mit.edu	37	chr9	133750268	133750268	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttagagatcttgctgccCgaaactgcctggtaggggag	13	9	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133750268	A	A	133750268	2	1	144	1	0	0	0	0	0	0	0	1	92	644	23	1		1	ABL1	9	133750268	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	2268360	133750268	7463163	363	124373											
CARD9	64170	broad.mit.edu	37	chr9	139265114	139265114	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgcgctccaccttgcagtCgtcctcggccttcatgaggc	10	16	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139265114	T	T	139265114	3	4	144	1	0	0	0	0	1	0	0	0	2678	884	31	4	1032	4	CARD9	9	139265114	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	5514846	139265114	1948317	364	124374											
PHPT1	29085	broad.mit.edu	37	chr9	139744639	139744639	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggccccagtaccagcttcGaggcccacctgagcctgctg	12	16	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139744639	A	A	139744639	1	1	144	0	1	0	0	0	0	0	0	0	11955	1073	37	4		4	PHPT1	9	139744639	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	479525	139744639	1468792	365	124375											
ABCA2	20	broad.mit.edu	37	chr9	139913597	139913597	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggctccccacaccaccCacagccgcctccctcgcggg	11	21	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139913597	T	T	139913597	1	4	144	0	1	0	0	0	0	0	0	0	32	609	21	4		4	ABCA2	9	139913597	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	168958	139913597	1299834	366	124376											
LARP4B	23185	broad.mit.edu	37	chr10	875438	875438	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaagtagaacgacgtcgCgtagcgctgctgggcataca	15	9	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	875438	T	T	875438	3	4	144	1	0	0	0	0	1	0	0	0	8703	768	27	4	1236	4	LARP4B	10	875438	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08		875438	134659309	367	124377											
KLF6	1316	broad.mit.edu	37	chr10	3822298	3822298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtcctcaggcacgtacCtgtcacagtgggagcattta	10	11	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3822298	A	A	3822298	3	1	144	1	0	0	0	0	1	0	0	0	8421	695	24	2	59	2	KLF6	10	3822298	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2946860	3822298	131712449	368	124378											
GDI2	2665	broad.mit.edu	37	chr10	5808296	5808296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcaggtgagctggtccCacacctgaccatggctctgc	11	14	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5808296	A	A	5808296	1	1	144	0	1	0	0	0	0	0	0	0	6385	609	21	2		2	GDI2	10	5808296	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1985998	5808296	129726451	369	124379											
DCLRE1C	64421	broad.mit.edu	37	chr10	14987175	14987175	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcacaggtgaacagtataGataaaccttcaagctgaaag	9	7	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14987175	C	C	14987175	3	2	144	1	0	0	0	0	1	0	0	0	4329	933	33	4	1951	4	DCLRE1C	10	14987175	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	9178879	14987175	120547572	370	124380											
CUBN	8029	broad.mit.edu	37	chr10	16994356	16994356	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgtggagaggaaacagtatCaaatgagctggtgaggatgt	15	5	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16994356	T	T	16994356	3	4	144	1	0	0	0	0	1	0	0	0	4084	826	29	4	6123	4	CUBN	10	16994356	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2007181	16994356	118540391	371	124381											
CUBN	8029	broad.mit.edu	37	chr10	17164803	17164803	+	Frame_Shift_Del	DEL	C	-	-													aaaaaagttacctgtaacttCccattgtattaacacatgtg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17164803	-	-	17164803	7	5	144	1	0	1	0	1	0	0	0	0	4084	855	30	0	10535	0	CUBN	10	17164803	Frame_Shift_Del	DEL	C	TCGA-49-6742-01A-11D-1855-08	170447	17164803	118369944	372	124382											
KIAA1217	56243	broad.mit.edu	37	chr10	24762918	24762918	+	Silent	SNP	C	T	T													ttatccagccttgtagacctCggccctcctctaatggagaa							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24762918	T	T	24762918	2	4	144	1	0	0	0	0	0	0	0	1	8286	871	31	4		4	KIAA1217	10	24762918	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	7598115	24762918	110771829	373	124383	540	2									
KIAA1217	56243	broad.mit.edu	37	chr10	24762928	24762928	+	Missense_Mutation	SNP	C	G	G													ttgtagacctcggccctcctCtaatggagaagcaagttttt							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24762928	G	G	24762928	3	3	144	1	0	0	0	0	1	0	0	0	8286	912	32	4	1640	4	KIAA1217	10	24762928	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	10	24762928	110771819	374	124384	540	2									
SVIL	6840	broad.mit.edu	37	chr10	29770826	29770826	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttaccaaataatgacaTtttgttattttagtctgaag	5	5	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29770826	G	G	29770826	1	3	144	0	1	0	0	0	0	0	0	0	15539	1508	52	5		5	SVIL	10	29770826	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	5007898	29770826	105763921	375	124385											
CCNY	219771	broad.mit.edu	37	chr10	35819000	35819000	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgagatgatttaattatttCtcttttgctccaatcgggag	8	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35819000	T	T	35819000	1	4	144	0	1	0	0	0	0	0	0	0	2966	928	32	4		4	CCNY	10	35819000	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	6048174	35819000	99715747	376	124386											
ZNF25	219749	broad.mit.edu	37	chr10	38260677	38260677	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcttgggaaaggctgaAaactgcaaagccagagcaga	12	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38260677	G	G	38260677	1	3	144	0	1	0	0	0	0	0	0	0	17920	29	1	5		5	ZNF25	10	38260677	5'UTR	SNP	A	TCGA-49-6742-01A-11D-1855-08	2441677	38260677	97274070	377	124387											
RET	5979	broad.mit.edu	37	chr10	43613962	43613962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgaggtgggcagccaCtgcacccaggctgggggctc	18	12	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43613962	A	A	43613962	1	1	144	0	1	0	0	0	0	0	0	0	13343	580	20	3		3	RET	10	43613962	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	5353285	43613962	91920785	378	124388											
CTNNA3	29119	broad.mit.edu	37	chr10	68979297	68979297	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacgccaacatgtggatcttCttctgttttattattattat	5	7	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68979297	T	T	68979297	1	4	144	0	1	0	0	0	0	0	0	0	4048	928	32	4		4	CTNNA3	10	68979297	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	25365335	68979297	66555450	379	124389											
HERC4	26091	broad.mit.edu	37	chr10	69683003	69683003	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttcactttaacatctgctCtaacgtgttatcttacttcc	4	12	4	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69683003	G	G	69683003	1	3	144	0	1	0	0	0	0	0	0	0	7127	928	32	4		4	HERC4	10	69683003	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	703706	69683003	65851744	380	124390											
USP54	159195	broad.mit.edu	37	chr10	75286573	75286573	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagagtctagtgaaagcatGaaagcaggttatagcaacat	10	6	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75286573	A	A	75286573	1	1	144	0	1	0	0	0	0	0	0	0	17212	1305	45	4		4	USP54	10	75286573	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	5603570	75286573	60248174	381	124391											
MYOZ1	58529	broad.mit.edu	37	chr10	75391780	75391780	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagccagggaataggggttcGattgaaagaaggcctgttgg	16	6	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75391780	C	C	75391780	3	2	144	1	0	0	0	0	1	0	0	0	10189	1066	37	4	95	4	MYOZ1	10	75391780	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	105207	75391780	60142967	382	124392											
AGAP5	729092	broad.mit.edu	37	chr10	75480190	75480190	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttacttttaaaacctccaCcaaggccatcttcccttgtt	4	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75480190	G	G	75480190	1	3	144	0	1	0	0	0	0	0	0	0	371	522	18	4		4	AGAP5	10	75480190	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	88410	75480190	60054557	383	124393											
KCNMA1	3778	broad.mit.edu	37	chr10	78872248	78872248	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacgttaccaagggaaggcCctgctggggctgccttacag	13	13	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78872248	T	T	78872248	1	4	144	0	1	0	0	0	0	0	0	0	8143	638	22	4		4	KCNMA1	10	78872248	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	3392058	78872248	56662499	384	124394											
SFTPA1	653509	broad.mit.edu	37	chr10	81373913	81373913	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggacgctctctggccttCggcctccatcctgaggctcc	12	16	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81373913	T	T	81373913	1	4	144	0	1	0	0	0	0	0	0	0	14302	899	31	4		4	SFTPA1	10	81373913	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	2501665	81373913	54160834	385	124395											
DNTT	1791	broad.mit.edu	37	chr10	98078338	98078338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgatggttaagaacataGgcttaggatcaacggagctg	13	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98078338	T	T	98078338	1	4	144	0	1	0	0	0	0	0	0	0	4720	1015	35	2		2	DNTT	10	98078338	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	16704425	98078338	37456409	386	124396											
PDZD7	79955	broad.mit.edu	37	chr10	102783592	102783592	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccctccagagctggggactCttccgtctgtccctgacagc	11	16	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102783592	T	T	102783592	1	4	144	0	1	0	0	0	0	0	0	0	11798	928	32	4		4	PDZD7	10	102783592	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	4705254	102783592	32751155	387	124397											
VWA2	340706	broad.mit.edu	37	chr10	116045881	116045881	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagggagctgctggtggCggtgcctgtgggggagtacc	20	9	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116045881	T	T	116045881	3	4	144	1	0	0	0	0	1	0	0	0	17366	768	27	4	1219	4	VWA2	10	116045881	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	13262289	116045881	19488866	388	124398											
EBF3	253738	broad.mit.edu	37	chr10	131671764	131671764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgacgggtctaggcggcGggcccgcctcccgtgtttgg	16	13	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131671764	T	T	131671764	3	4	144	1	0	0	0	0	1	0	0	0	4922	1116	39	1	958	1	EBF3	10	131671764	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	15625883	131671764	3862983	389	124399											
KNDC1	85442	broad.mit.edu	37	chr10	135038376	135038376	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggacaagctacggaggatGaaggctacattccagtagcc	12	10	0	1	rs141333921		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135038376	A	A	135038376	3	1	144	1	0	0	0	0	1	0	0	0	8497	1290	45	4	5350	4	KNDC1	10	135038376	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	3366612	135038376	496371	390	124400											
MUC2	4583	broad.mit.edu	37	chr11	1096391	1096391	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actctactacagctaccaggGcaactgcacctacgtgctgg	9	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1096391	A	A	1096391	3	1	144	1	0	0	0	0	1	0	0	0	10069	1203	42	4	6542	4	MUC2	11	1096391	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08		1096391	133910125	391	124401											
SLC22A18	5002	broad.mit.edu	37	chr11	2929522	2929522	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggctacctgcaaaccaccttCggggtgctgcagctgctggg	14	13	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2929522	T	T	2929522	2	4	144	1	0	0	0	0	0	0	0	1	14562	883	31	4		4	SLC22A18	11	2929522	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1833131	2929522	132076994	392	124402											
OR52R1	119695	broad.mit.edu	37	chr11	4825130	4825130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaccatgaagcagaaggGgctcacccacagcagccctc	10	15	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4825130	T	T	4825130	3	4	144	1	0	0	0	0	1	0	0	0	11225	1232	43	2	469	2	OR52R1	11	4825130	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1895608	4825130	130181386	393	124403											
OR51A4	401666	broad.mit.edu	37	chr11	4967632	4967632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagagccttaagctgctcCtttttggatgcaattcccag	9	10	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4967632	A	A	4967632	3	1	144	1	0	0	0	0	1	0	0	0	11181	680	24	2	244	2	OR51A4	11	4967632	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	142502	4967632	130038884	394	124404											
OR2D2	120776	broad.mit.edu	37	chr11	6913260	6913260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtatgaaggtggtgtctaCcacagacaccagaatgccac	10	11	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6913260	A	A	6913260	3	1	144	1	0	0	0	0	1	0	0	0	11088	507	18	3	457	3	OR2D2	11	6913260	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1945628	6913260	128093256	395	124405											
EIF3F	8665	broad.mit.edu	37	chr11	8016481	8016481	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggatgactgaattctctctCttactgcccaccactgccgc	8	15	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8016481	T	T	8016481	1	4	144	0	1	0	0	0	0	0	0	0	5058	928	32	4		4	EIF3F	11	8016481	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1103221	8016481	126990035	396	124406											
RPL27A	6157	broad.mit.edu	37	chr11	8704205	8704205	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggatcaccaccctcagaaaGaggaagcgactagcaggcgc	13	12	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8704205	C	C	8704205	1	2	144	0	1	0	0	0	0	0	0	0	13687	957	33	4		4	RPL27A	11	8704205	5'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	687724	8704205	126302311	397	124407											
C11orf16	56673	broad.mit.edu	37	chr11	8946917	8946917	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtcccaacagagtggaCacgtgcatcaaattcctaag	9	11	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8946917	T	T	8946917	1	4	144	0	1	0	0	0	0	0	0	0	1642	493	17	4		4	C11orf16	11	8946917	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	242712	8946917	126059599	398	124408											
TPH1	7166	broad.mit.edu	37	chr11	18057575	18057575	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtatgagacttcagcagatGaaaaatatcattcaattgtt	8	5	3	3	rs146455709	byFrequency	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18057575	C	C	18057575	3	2	144	1	0	0	0	0	1	0	0	0	16525	1290	45	4	1138	4	TPH1	11	18057575	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	9110658	18057575	116948941	399	124409											
NAV2	89797	broad.mit.edu	37	chr11	19970312	19970312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcagcttgacagggagGcccacacctctgtcctggag	11	13	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19970312	T	T	19970312	3	4	144	1	0	0	0	0	1	0	0	0	10278	1194	42	3	2448	3	NAV2	11	19970312	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1912737	19970312	115036204	400	124410											
DBX1	120237	broad.mit.edu	37	chr11	20178576	20178576	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtgctgtggaggaaatgCgctcacctgcgagtctttca	15	9	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20178576	T	T	20178576	1	4	144	0	1	0	0	0	0	0	0	0	4292	783	27	4		4	DBX1	11	20178576	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	208264	20178576	114827940	401	124411											
DBX1	120237	broad.mit.edu	37	chr11	20180949	20180949	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgatataattagcccttcatCtggtttcaaagacatctttc	5	10	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20180949	G	G	20180949	1	3	144	0	1	0	0	0	0	0	0	0	4292	928	32	4		4	DBX1	11	20180949	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2373	20180949	114825567	402	124412											
FANCF	2188	broad.mit.edu	37	chr11	22646211	22646211	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaactatatattctatattCaagtaataacacagcattgc	3	7	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22646211	T	T	22646211	1	4	144	0	1	0	0	0	0	0	0	0	5724	841	29	4		4	FANCF	11	22646211	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	2465262	22646211	112360305	403	124413											
LIN7C	55327	broad.mit.edu	37	chr11	27528219	27528219	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcgacacagcactccCccaacccttccgcccacctc	4	24	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27528219	G	G	27528219	1	3	144	0	1	0	0	0	0	0	0	0	8885	638	22	4		4	LIN7C	11	27528219	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	4882008	27528219	107478297	404	124414											
PAMR1	25891	broad.mit.edu	37	chr11	35453913	35453913	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagcatggttcatttcatAtttctttcaatccagtcttt	5	8	5	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35453913	G	G	35453913	2	3	144	1	0	0	0	0	0	0	0	1	11507	446	16	5		5	PAMR1	11	35453913	Silent	SNP	A	TCGA-49-6742-01A-11D-1855-08	7925694	35453913	99552603	405	124415											
LDLRAD3	143458	broad.mit.edu	37	chr11	36103258	36103258	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtgccagcggcatccaTtgcatcattggtcgcttccg	10	15	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36103258	C	C	36103258	2	2	144	1	0	0	0	0	0	0	0	1	8779	1490	52	5		5	LDLRAD3	11	36103258	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	649345	36103258	98903258	406	124416											
OR5L2	26338	broad.mit.edu	37	chr11	55594902	55594902	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagccacttgtcctttgtaGatttctgctactcctcaata	5	12	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55594902	A	A	55594902	3	1	144	1	0	0	0	0	1	0	0	0	11265	942	33	4	210	4	OR5L2	11	55594902	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	19491644	55594902	79411614	407	124417											
OR5I1	10798	broad.mit.edu	37	chr11	55703807	55703807	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaacaggacaatctgcagttCagggcgagttggaaaaccta	12	8	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55703807	T	T	55703807	3	4	144	1	0	0	0	0	1	0	0	0	11258	835	29	4	877	4	OR5I1	11	55703807	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	108905	55703807	79302709	408	124418											
OR8J3	81168	broad.mit.edu	37	chr11	55904846	55904846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcggtcataggccatcaCagccagcatcattacctccg	8	14	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55904846	A	A	55904846	3	1	144	1	0	0	0	0	1	0	0	0	11336	478	17	3	600	3	OR8J3	11	55904846	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	201039	55904846	79101670	409	124419											
OR5T1	390155	broad.mit.edu	37	chr11	56043714	56043714	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctctgcttgctatttcTtgttctgacactcacgtaat	5	13	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56043714	A	A	56043714	2	1	144	1	0	0	0	0	0	0	0	1	11275	1596	56	5		5	OR5T1	11	56043714	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	138868	56043714	78962802	410	124420											
OR5M3	219482	broad.mit.edu	37	chr11	56237502	56237502	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagccgtaagtccataatgTtgctgccagactcgtcagaa	9	11	1	2	rs148100298	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56237502	G	G	56237502	3	3	144	1	0	0	0	0	1	0	0	0	11269	1725	60	5	453	5	OR5M3	11	56237502	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	193788	56237502	78769014	411	124421											
SMTNL1	219537	broad.mit.edu	37	chr11	57310944	57310944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgggaaagtccagttttcCtcctgatgatttccagagcc	10	10	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57310944	T	T	57310944	1	4	144	0	1	0	0	0	0	0	0	0	14929	696	24	4		4	SMTNL1	11	57310944	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1073442	57310944	77695572	412	124422											
SERPING1	710	broad.mit.edu	37	chr11	57382081	57382081	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatcaggttagggcgagCgctacctctccagcctcagc	12	14	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57382081	A	A	57382081	1	1	144	0	1	0	0	0	0	0	0	0	14229	783	27	3		3	SERPING1	11	57382081	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	71137	57382081	77624435	413	124423											
TCN1	6947	broad.mit.edu	37	chr11	59620404	59620404	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggacaataaacatggaactCcactgcaaatggattttatg	8	7	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59620404	T	T	59620404	1	4	144	0	1	0	0	0	0	0	0	0	15828	870	30	4		4	TCN1	11	59620404	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	2238323	59620404	75386112	414	124424											
MS4A4A	51338	broad.mit.edu	37	chr11	60073747	60073747	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatcgattacacacacttaGagtcttaacacagaacacat	4	10	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60073747	C	C	60073747	1	2	144	0	1	0	0	0	0	0	0	0	9956	957	33	4		4	MS4A4A	11	60073747	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	453343	60073747	74932769	415	124425											
SLC15A3	51296	broad.mit.edu	37	chr11	60714087	60714087	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacacttggctgcccatcggGggcttggtgatgaagacggg	17	9	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60714087	C	C	60714087	2	2	144	1	0	0	0	0	0	0	0	1	14513	1219	43	4		4	SLC15A3	11	60714087	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	640340	60714087	74292429	416	124426											
STIP1	10963	broad.mit.edu	37	chr11	63964632	63964632	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaggccttcaggagaacttGatagaattctattcatgtta	9	6	3	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63964632	C	C	63964632	1	2	144	0	1	0	0	0	0	0	0	0	15403	1305	45	4		4	STIP1	11	63964632	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	3250545	63964632	71041884	417	124427											
RBM14	10432	broad.mit.edu	37	chr11	66391877	66391877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggggatacggccttccctgGaactggtggcttctctgcca	13	12	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66391877	A	A	66391877	3	1	144	1	0	0	0	0	1	0	0	0	13223	1174	41	4	536	4	RBM14	11	66391877	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	2427245	66391877	68614639	418	124428											
SPTBN2	6712	broad.mit.edu	37	chr11	66475652	66475652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcgctgagccaggtctccCgcatggcagccttgcggtcg	13	15	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66475652	A	A	66475652	3	1	144	1	0	0	0	0	1	0	0	0	15238	652	23	1	5970	1	SPTBN2	11	66475652	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	83775	66475652	68530864	419	124429											
MRPL21	219927	broad.mit.edu	37	chr11	68667950	68667950	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaaaaggtaggaagttttGactttagaaagatggttcta	10	4	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68667950	A	A	68667950	1	1	144	0	1	0	0	0	0	0	0	0	9881	1305	45	4		4	MRPL21	11	68667950	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2192298	68667950	66338566	420	124430											
CCND1	595	broad.mit.edu	37	chr11	69458698	69458699	+	Missense_Mutation	DNP	GG	TA	TA													ctctccaaaatgccagaggcGgaggagaacaaacagatcat							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	69458699	TA	TA	69458698	3	4	144	1	0	0	0	0	1	0	0	0	2946	1103	39	1	523	1	CCND1	11	69458698	Missense_Mutation	DNP	GG	TCGA-49-6742-01A-11D-1855-08	790748	69458698	65547818	421	124431											
CCND1	595	broad.mit.edu	37	chr11	69458796	69458796	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcccccggcctccccttgaGagccggctccttaggtgacc	11	18	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69458796	C	C	69458796	1	2	144	0	1	0	0	0	0	0	0	0	2946	957	33	4		4	CCND1	11	69458796	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	98	69458796	65547720	422	124432											
RNF121	55298	broad.mit.edu	37	chr11	71701662	71701662	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatcaaaccagaagatgccAtggactttggcatctccctt	9	11	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71701662	G	G	71701662	3	3	144	1	0	0	0	0	1	0	0	0	13542	217	8	5	548	5	RNF121	11	71701662	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	2242866	71701662	63304854	423	124433											
NUMA1	4926	broad.mit.edu	37	chr11	71727042	71727042	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtggtgagctcagaggtcaGagaggccacctgggcagtca	16	9	3	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71727042	A	A	71727042	2	1	144	1	0	0	0	0	0	0	0	1	10845	933	33	4		4	NUMA1	11	71727042	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	25380	71727042	63279474	424	124434											
ARHGEF17	9828	broad.mit.edu	37	chr11	73075516	73075516	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccatttctgggacccccaGaacttcaaatcagtgacctt	8	13	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73075516	C	C	73075516	3	2	144	1	0	0	0	0	1	0	0	0	902	933	33	4	5491	4	ARHGEF17	11	73075516	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1348474	73075516	61931000	425	124435											
P4HA3	283208	broad.mit.edu	37	chr11	74015301	74015301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcttaccctccagccCtcctcctcattacctcggat	3	19	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74015301	A	A	74015301	1	1	144	0	1	0	0	0	0	0	0	0	11452	696	24	2		2	P4HA3	11	74015301	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	939785	74015301	60991215	426	124436											
RSF1	51773	broad.mit.edu	37	chr11	77388035	77388035	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtggagatatcttttcctCggccaactcctgaatttggg	11	9	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77388035	T	T	77388035	3	4	144	1	0	0	0	0	1	0	0	0	13810	884	31	4	1198	4	RSF1	11	77388035	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3372734	77388035	57618481	427	124437											
NAALAD2	10003	broad.mit.edu	37	chr11	89896313	89896313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggctgatttgaaactaCtaaattttgaggaaaactgt	8	4	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89896313	A	A	89896313	1	1	144	0	1	0	0	0	0	0	0	0	10222	580	20	3		3	NAALAD2	11	89896313	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	12508278	89896313	45110203	428	124438											
DYNC2H1	79659	broad.mit.edu	37	chr11	103182782	103182782	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtaagtaagaacatgtcttGaatacattctaagctttata	7	5	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103182782	C	C	103182782	1	2	144	0	1	0	0	0	0	0	0	0	4886	1305	45	4		4	DYNC2H1	11	103182782	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	13286469	103182782	31823734	429	124439											
DDI1	414301	broad.mit.edu	37	chr11	103908057	103908057	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcaaccctcccttggcggaAgccctgctcagcggaagcct	11	17	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103908057	C	C	103908057	3	2	144	1	0	0	0	0	1	0	0	0	4361	69	3	5	509	5	DDI1	11	103908057	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	725275	103908057	31098459	430	124440											
GUCY1A2	2977	broad.mit.edu	37	chr11	106558341	106558341	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accttttttattctcgacgaAgaaagagaaggctttggtgg	11	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106558341	C	C	106558341	2	2	144	1	0	0	0	0	0	0	0	1	6958	59	3	5		5	GUCY1A2	11	106558341	Silent	SNP	A	TCGA-49-6742-01A-11D-1855-08	2650284	106558341	28448175	431	124441											
USP28	57646	broad.mit.edu	37	chr11	113675628	113675628	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttatctgcaaactgttcCagaagggttcgttctactac	7	9	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113675628	A	A	113675628	2	1	144	1	0	0	0	0	0	0	0	1	17185	581	21	2		2	USP28	11	113675628	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	7117287	113675628	21330888	432	124442											
SIK3	23387	broad.mit.edu	37	chr11	116719725	116719725	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaccgtttccagaaaggctGaatgctgactgaggagagcg	13	10	0	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116719725	A	A	116719725	1	1	144	0	1	0	0	0	0	0	0	0	14432	1305	45	4		4	SIK3	11	116719725	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	3044097	116719725	18286791	433	124443											
UPK2	7379	broad.mit.edu	37	chr11	118828128	118828128	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagaagctagtgtgggggaGatctggtgggcatgaggaga	20	3	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118828128	C	C	118828128	1	2	144	0	1	0	0	0	0	0	0	0	17135	957	33	4		4	UPK2	11	118828128	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2108403	118828128	16178388	434	124444											
UPK2	7379	broad.mit.edu	37	chr11	118828747	118828747	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggatgagtgtgaggccgtGagcctcaggcaggctggggg	20	8	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118828747	A	A	118828747	1	1	144	0	1	0	0	0	0	0	0	0	17135	1305	45	4		4	UPK2	11	118828747	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	619	118828747	16177769	435	124445											
MCAM	4162	broad.mit.edu	37	chr11	119183672	119183672	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggacccctgggcagggagGaaggggaggaagactcagcc	19	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119183672	A	A	119183672	1	1	144	0	1	0	0	0	0	0	0	0	9461	1189	41	4		4	MCAM	11	119183672	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	354925	119183672	15822844	436	124446											
CACNA1C	775	broad.mit.edu	37	chr12	2716101	2716101	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcactggcaggccaggcgtGaaggaagatgggagatccca	16	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2716101	A	A	2716101	1	1	144	0	1	0	0	0	0	0	0	0	2566	1305	45	4		4	CACNA1C	12	2716101	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08		2716101	131135794	437	124447											
ATN1	1822	broad.mit.edu	37	chr12	7047629	7047629	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccgctttgactccacttttCcctgtatcccacagaagttg	7	14	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7047629	T	T	7047629	1	4	144	0	1	0	0	0	0	0	0	0	1115	870	30	4		4	ATN1	12	7047629	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	4331528	7047629	126804266	438	124448											
PRB4	5545	broad.mit.edu	37	chr12	11201049	11201049	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtggaacaaaagatacatGaatccaagagtttggtaaag	11	4	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11201049	A	A	11201049	1	1	144	0	1	0	0	0	0	0	0	0	12551	1305	45	4		4	PRB4	12	11201049	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4153420	11201049	122650846	439	124449											
SOX5	6660	broad.mit.edu	37	chr12	24048627	24048627	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttgtgcatgggttcttaAgtagatgttaattataaagc	9	4	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24048627	G	G	24048627	1	3	144	0	1	0	0	0	0	0	0	0	15068	87	3	5		5	SOX5	12	24048627	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	12847578	24048627	109803268	440	124450											
TM7SF3	51768	broad.mit.edu	37	chr12	27128447	27128447	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accattagtttgaaaaggcaCatttgtgaaagctctgtgga	10	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27128447	T	T	27128447	3	4	144	1	0	0	0	0	1	0	0	0	16098	478	17	4	288	4	TM7SF3	12	27128447	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3079820	27128447	106723448	441	124451											
CCDC91	55297	broad.mit.edu	37	chr12	28605347	28605347	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcttttaggttaaccaagTctgttactcaagaaattatt	5	6	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28605347	G	G	28605347	1	3	144	0	1	0	0	0	0	0	0	0	2898	1682	58	5		5	CCDC91	12	28605347	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	1476900	28605347	105246548	442	124452											
CCDC91	55297	broad.mit.edu	37	chr12	28605389	28605389	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcagtctttcaaatttgttCtggtctttatttattttgaa	6	5	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28605389	A	A	28605389	1	1	144	0	1	0	0	0	0	0	0	0	2898	928	32	3		3	CCDC91	12	28605389	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	42	28605389	105246506	443	124453											
OVCH1	341350	broad.mit.edu	37	chr12	29617518	29617518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctgtgtgggagacataCtggcctcaccaccgagttgt	13	11	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29617518	A	A	29617518	3	1	144	1	0	0	0	0	1	0	0	0	11417	565	20	3	1401	3	OVCH1	12	29617518	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1012129	29617518	104234377	444	124454											
MLL2	8085	broad.mit.edu	37	chr12	49415782	49415782	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcagagaaggggtgaaagGaggaggagctgctttgtcac	18	5	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49415782	A	A	49415782	1	1	144	0	1	0	0	0	0	0	0	0	9714	1189	41	4		4	MLL2	12	49415782	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	19798264	49415782	84436113	445	124455											
MLL2	8085	broad.mit.edu	37	chr12	49422665	49422665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacctcacttcctttgccCttttcccaagttgtgacagg	7	14	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49422665	A	A	49422665	3	1	144	1	0	0	0	0	1	0	0	0	9714	680	24	2	2325	2	MLL2	12	49422665	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	6883	49422665	84429230	446	124456											
TUBA1A	7846	broad.mit.edu	37	chr12	49578828	49578828	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttcctcaccctctccttCaacagaatccacaccaacct	1	19	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49578828	G	G	49578828	3	3	144	1	0	0	0	0	1	0	0	0	16869	835	29	4	38	4	TUBA1A	12	49578828	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	156163	49578828	84273067	447	124457											
TROAP	10024	broad.mit.edu	37	chr12	49724414	49724414	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagagtcctactgtaggattGagcctgagataccggagtcc	12	9	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49724414	A	A	49724414	3	1	144	1	0	0	0	0	1	0	0	0	16700	1291	45	4	1934	4	TROAP	12	49724414	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	145586	49724414	84127481	448	124458											
RAB5B	5869	broad.mit.edu	37	chr12	56374311	56374311	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggcctcctgacttgagcaaGatgtcccgggccagggaact	13	13	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56374311	C	C	56374311	1	2	144	0	1	0	0	0	0	0	0	0	13057	957	33	4		4	RAB5B	12	56374311	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	6649897	56374311	77477584	449	124459											
ZC3H10	84872	broad.mit.edu	37	chr12	56514975	56514975	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagccaggcccaaaacgccGgcgaggtggatgctgccccc	14	15	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56514975	A	A	56514975	3	1	144	1	0	0	0	0	1	0	0	0	17685	1116	39	4	631	4	ZC3H10	12	56514975	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	140664	56514975	77336920	450	124460											
CNPY2	10330	broad.mit.edu	37	chr12	56708678	56708678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggattgatccggaaagatCccatctgaatggtcttcttg	10	9	3	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56708678	A	A	56708678	3	1	144	1	0	0	0	0	1	0	0	0	3660	855	30	3	403	3	CNPY2	12	56708678	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	193703	56708678	77143217	451	124461											
OSBPL8	114882	broad.mit.edu	37	chr12	76763494	76763494	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccactcttcattttttgtTttccgatccctggcagcttg	7	12	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76763494	A	A	76763494	3	1	144	1	0	0	0	0	1	0	0	0	11377	1838	64	5	526	5	OSBPL8	12	76763494	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	20054816	76763494	57088401	452	124462											
PPFIA2	8499	broad.mit.edu	37	chr12	81678087	81678087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacgttgcctgaaggctagTgaggaggcccagagggaagc	16	8	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81678087	C	C	81678087	1	2	144	0	1	0	0	0	0	0	0	0	12406	1711	59	5		5	PPFIA2	12	81678087	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	4914593	81678087	52173808	453	124463											
TMTC2	160335	broad.mit.edu	37	chr12	83379945	83379945	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attagggatgcaatggtggtGatactaactttgaaccctgt	11	6	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83379945	A	A	83379945	1	1	144	0	1	0	0	0	0	0	0	0	16384	1305	45	4		4	TMTC2	12	83379945	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1701858	83379945	50471950	454	124464											
TMTC2	160335	broad.mit.edu	37	chr12	83424669	83424669	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcattatggtgagtggttGatagttttttttccatgtcc	10	5	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83424669	A	A	83424669	1	1	144	0	1	0	0	0	0	0	0	0	16384	1305	45	4		4	TMTC2	12	83424669	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	44724	83424669	50427226	455	124465											
TSPAN19	144448	broad.mit.edu	37	chr12	85411261	85411261	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaagttgcattcagtggctCatcacaaaaccattttctta	6	9	4	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85411261	T	T	85411261	3	4	144	1	0	0	0	0	1	0	0	0	16768	835	29	4	190	4	TSPAN19	12	85411261	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1986592	85411261	48440634	456	124466											
ATP2B1	490	broad.mit.edu	37	chr12	89992965	89992965	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caactccctttcagcgtgatCaatctcttcaacatcctctg	4	15	5	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89992965	T	T	89992965	3	4	144	1	0	0	0	0	1	0	0	0	1143	826	29	4	548	4	ATP2B1	12	89992965	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	4581704	89992965	43858930	457	124467											
USP44	84101	broad.mit.edu	37	chr12	95927518	95927518	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttcttcttgcttttttcttCcaatgggtgattgttcaaac	7	8	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95927518	T	T	95927518	3	4	144	1	0	0	0	0	1	0	0	0	17202	855	30	4	1643	4	USP44	12	95927518	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	5934553	95927518	37924377	458	124468											
GOLGA2B	55592	broad.mit.edu	37	chr12	100551822	100551822	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgggatgcttggcatgggctGaggcacctcctcctcctcct	12	15	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100551822	A	A	100551822	4	1	144	1	0	0	0	0	0	1	0	0	6617	1299	45	4	419	4	GOLGA2B	12	100551822	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	4624304	100551822	33300073	459	124469											
DRAM1	55332	broad.mit.edu	37	chr12	102302092	102302092	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaacagtctctcgacatgCcacatacggatggtcatctc	9	12	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102302092	T	T	102302092	2	4	144	1	0	0	0	0	0	0	0	1	4793	747	26	4		4	DRAM1	12	102302092	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1750270	102302092	31549803	460	124470											
SSH1	54434	broad.mit.edu	37	chr12	109181921	109181921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtcagcgacggtggacGggtcagcctcactggacagg	18	10	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109181921	T	T	109181921	3	4	144	1	0	0	0	0	1	0	0	0	15302	1116	39	1	160	1	SSH1	12	109181921	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	6879829	109181921	24669974	461	124471											
DAO	1610	broad.mit.edu	37	chr12	109281448	109281448	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcggggtgctttgagtctCgtaggcaacagactcctggg	17	9	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109281448	T	T	109281448	1	4	144	0	1	0	0	0	0	0	0	0	4264	899	31	4		4	DAO	12	109281448	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	99527	109281448	24570447	462	124472											
IFT81	28981	broad.mit.edu	37	chr12	110618328	110618328	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaattcggtcttttgcagagGactgaagaacttcttaagca	10	7	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110618328	A	A	110618328	2	1	144	1	0	0	0	0	0	0	0	1	7635	1165	41	4		4	IFT81	12	110618328	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1336880	110618328	23233567	463	124473											
SH2B3	10019	broad.mit.edu	37	chr12	111884867	111884867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccctcgtccctggcacCacctttgctgctaccacccc	8	20	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111884867	A	A	111884867	1	1	144	0	1	0	0	0	0	0	0	0	14342	609	21	2		2	SH2B3	12	111884867	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1266539	111884867	21967028	464	124474											
OAS3	4940	broad.mit.edu	37	chr12	113386888	113386888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaccaaggagctggacCgcttcatccaggaccacctg	9	17	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113386888	A	A	113386888	3	1	144	1	0	0	0	0	1	0	0	0	10896	652	23	1	1274	1	OAS3	12	113386888	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1502021	113386888	20465007	465	124475											
SDS	10993	broad.mit.edu	37	chr12	113830941	113830941	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgcaggcgggctccaccagGatcttctcatcatctgccag	10	16	4	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113830941	T	T	113830941	2	4	144	1	0	0	0	0	0	0	0	1	14088	1164	41	3		3	SDS	12	113830941	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	444053	113830941	20020954	466	124476											
RBM19	9904	broad.mit.edu	37	chr12	114397877	114397877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatactttcttaatttctGgagtagtagagtcttttgga	8	5	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114397877	A	A	114397877	3	1	144	1	0	0	0	0	1	0	0	0	13229	1348	47	4	2644	4	RBM19	12	114397877	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	566936	114397877	19454018	467	124477											
TESC	54997	broad.mit.edu	37	chr12	117513112	117513112	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccactcagctgcttaaatCtccgatggagctgctcgatc	8	14	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117513112	A	A	117513112	3	1	144	1	0	0	0	0	1	0	0	0	15888	913	32	3	580	3	TESC	12	117513112	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3115235	117513112	16338783	468	124478											
CCDC60	160777	broad.mit.edu	37	chr12	119909847	119909847	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtggatattttgctattctGagggaagagactgcaaagaa	12	5	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119909847	C	C	119909847	2	2	144	1	0	0	0	0	0	0	0	1	2859	1277	45	4		4	CCDC60	12	119909847	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	2396735	119909847	13942048	469	124479											
CIT	11113	broad.mit.edu	37	chr12	120241294	120241294	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttactccttcggcgctggcGatggcactgcagcgcctgct	12	15	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120241294	A	A	120241294	1	1	144	0	1	0	0	0	0	0	0	0	3469	1073	37	4		4	CIT	12	120241294	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	331447	120241294	13610601	470	124480											
NCOR2	9612	broad.mit.edu	37	chr12	124884916	124884916	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaggtagcgctgggatttGactccaaccatgacttacac	10	10	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124884916	C	C	124884916	1	2	144	0	1	0	0	0	0	0	0	0	10331	1305	45	4		4	NCOR2	12	124884916	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4643622	124884916	8966979	471	124481											
GOLGA3	2802	broad.mit.edu	37	chr12	133353279	133353279	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctccgtcaagtccaGctgctgcttcaaggactgga	11	13	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133353279	A	A	133353279	2	1	144	1	0	0	0	0	0	0	0	1	6618	962	34	4		4	GOLGA3	12	133353279	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	8468363	133353279	498616	472	124482											
TPTE2	93492	broad.mit.edu	37	chr13	19997285	19997285	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttatgtggattatccaattCatttcttggtagacaaagcc	7	7	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19997285	A	A	19997285	4	1	144	1	0	0	0	0	0	1	0	0	16555	835	29	3	86	3	TPTE2	13	19997285	Nonsense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08		19997285	95172593	473	124483											
PSPC1	55269	broad.mit.edu	37	chr13	20304631	20304632	+	Intron	DNP	CC	AA	AA													cggcatcctaaatttaccttCcttctatgtcactccaagcc							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20304632	AA	AA	20304631	1	1	144	0	1	0	0	0	0	0	0	0	12822	870	30	3		3	PSPC1	13	20304631	Intron	DNP	CC	TCGA-49-6742-01A-11D-1855-08	307346	20304631	94865247	474	124484											
IFT88	8100	broad.mit.edu	37	chr13	21265279	21265279	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgatgaggatgattttgctGatgaagaattaggagatgat	13	2	0	7			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21265279	C	C	21265279	3	2	144	1	0	0	0	0	1	0	0	0	7636	1290	45	4	2569	4	IFT88	13	21265279	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	960648	21265279	93904599	475	124485											
SGCG	6445	broad.mit.edu	37	chr13	23808902	23808902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttatgaaaaataaatcatGtttaagcacaaaaattcagt	4	5	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23808902	T	T	23808902	1	4	144	0	1	0	0	0	0	0	0	0	14316	1392	48	3		3	SGCG	13	23808902	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2543623	23808902	91360976	476	124486											
ATP8A2	51761	broad.mit.edu	37	chr13	26043143	26043143	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgttcttctttgggctataaGaaggcagaggatgagatgtc	13	6	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26043143	A	A	26043143	2	1	144	1	0	0	0	0	0	0	0	1	1197	933	33	4		4	ATP8A2	13	26043143	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	2234241	26043143	89126735	477	124487											
ATP8A2	51761	broad.mit.edu	37	chr13	26436463	26436463	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatctggctgtctggggaAgcatgctgacctggctggtg	16	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26436463	C	C	26436463	3	2	144	1	0	0	0	0	1	0	0	0	1197	72	3	5	3230	5	ATP8A2	13	26436463	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	393320	26436463	88733415	478	124488											
USPL1	10208	broad.mit.edu	37	chr13	31232310	31232310	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtagaaattgagaaggAcgctcagttaaaacaattcc	9	7	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31232310	T	T	31232310	3	4	144	1	0	0	0	0	1	0	0	0	17219	275	10	5	2126	5	USPL1	13	31232310	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	4795847	31232310	83937568	479	124489											
HSPH1	10808	broad.mit.edu	37	chr13	31728953	31728953	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagctacatgccaatattTaacttccaaaaattagcaca	3	9	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31728953	G	G	31728953	1	3	144	0	1	0	0	0	0	0	0	0	7501	1769	61	5		5	HSPH1	13	31728953	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	496643	31728953	83440925	480	124490											
DCLK1	9201	broad.mit.edu	37	chr13	36379850	36379850	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttacattaacccagggatGctcaagtacttgaacagcag	8	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36379850	A	A	36379850	3	1	144	1	0	0	0	0	1	0	0	0	4324	1319	46	4	275	4	DCLK1	13	36379850	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	4650897	36379850	78790028	481	124491											
ENOX1	55068	broad.mit.edu	37	chr13	43788178	43788178	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttccatcttttttccagcGtggctcccacacccgtgaat	7	15	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43788178	A	A	43788178	3	1	144	1	0	0	0	0	1	0	0	0	5168	1145	40	4	55	4	ENOX1	13	43788178	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	7408328	43788178	71381700	482	124492											
ENOX1	55068	broad.mit.edu	37	chr13	43872695	43872695	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaacagaacgagttcaggtGagctaccttcttgcttagct	9	10	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43872695	A	A	43872695	1	1	144	0	1	0	0	0	0	0	0	0	5168	1305	45	4		4	ENOX1	13	43872695	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	84517	43872695	71297183	483	124493											
COG3	83548	broad.mit.edu	37	chr13	46039397	46039397	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatggggctgggattctcctCgggcgccccggcaggacccc	16	15	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46039397	T	T	46039397	1	4	144	0	1	0	0	0	0	0	0	0	3691	899	31	4		4	COG3	13	46039397	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2166702	46039397	69130481	484	124494											
FNDC3A	22862	broad.mit.edu	37	chr13	49752734	49752734	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaagcctaaatatgatggaGaagatcttgcttacacagtg	9	6	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49752734	C	C	49752734	3	2	144	1	0	0	0	0	1	0	0	0	6027	943	33	4	1622	4	FNDC3A	13	49752734	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	3713337	49752734	65417144	485	124495											
NEK5	341676	broad.mit.edu	37	chr13	52701619	52701619	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcacatcgtacttatccatGgtctccaatgggctgagttt	8	10	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52701619	A	A	52701619	1	1	144	0	1	0	0	0	0	0	0	0	10422	1363	47	4		4	NEK5	13	52701619	5'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	2948885	52701619	62468259	486	124496											
UBAC2	337867	broad.mit.edu	37	chr13	99890507	99890507	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtttccagtgtcttttgatCacttacatccccaggtcgat	7	11	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99890507	T	T	99890507	1	4	144	0	1	0	0	0	0	0	0	0	16961	841	29	4		4	UBAC2	13	99890507	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	47188888	99890507	15279371	487	124497											
NALCN	259232	broad.mit.edu	37	chr13	101734027	101734030	+	Intron	DEL	AGAG	-	-													aagcaaagaagaaaataaacAgagagagtgtttagtacata							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101734030	-	-	101734027	6	5	144	0	1	1	0	1	0	0	0	0	10242	203	7	0		0	NALCN	13	101734027	Intron	DEL	AGAG	TCGA-49-6742-01A-11D-1855-08	1843520	101734027	13435851	488	124498											
NALCN	259232	broad.mit.edu	37	chr13	101760020	101760020	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttgccattcccgaatgaGagccatgggacactgcagca	10	11	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101760020	A	A	101760020	1	1	144	0	1	0	0	0	0	0	0	0	10242	957	33	4		4	NALCN	13	101760020	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	25993	101760020	13409858	489	124499											
NALCN	259232	broad.mit.edu	37	chr13	101910917	101910917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggaaaacggatgaccgCatcattttctgagggggcga	14	7	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101910917	A	A	101910917	3	1	144	1	0	0	0	0	1	0	0	0	10242	710	25	3	4209	3	NALCN	13	101910917	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	150897	101910917	13258961	490	124500											
COL4A1	1282	broad.mit.edu	37	chr13	110855804	110855804	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttcctctcccagcgctctCacagacccagggtcctctcc	6	21	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110855804	T	T	110855804	1	4	144	0	1	0	0	0	0	0	0	0	3721	841	29	4		4	COL4A1	13	110855804	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	8944887	110855804	4314074	491	124501											
GRK1	6011	broad.mit.edu	37	chr13	114322111	114322111	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggcgaagtttaaggaggGgcctgtggagatccaggacg	18	6	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114322111	A	A	114322111	3	1	144	1	0	0	0	0	1	0	0	0	6856	1232	43	4	412	4	GRK1	13	114322111	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	3466307	114322111	847767	492	124502											
FAM70B	348013	broad.mit.edu	37	chr13	114514649	114514649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtatatgtcaggcttccCtgtggtccggcacggggtgg	16	10	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114514649	A	A	114514649	1	1	144	0	1	0	0	0	0	0	0	0	5657	696	24	2		2	FAM70B	13	114514649	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	192538	114514649	655229	493	124503											
RNASE10	338879	broad.mit.edu	37	chr14	20978765	20978765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccgctcaatgaattttgGtccagtgactcacaggacaa	8	11	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20978765	T	T	20978765	3	4	144	1	0	0	0	0	1	0	0	0	13511	1270	44	3	137	3	RNASE10	14	20978765	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08		20978765	86370775	494	124504											
COCH	1690	broad.mit.edu	37	chr14	31344243	31344243	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaggctggagccagccctCacgcttctctcttcgcaggt	12	14	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31344243	T	T	31344243	1	4	144	0	1	0	0	0	0	0	0	0	3688	841	29	4		4	COCH	14	31344243	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	10365478	31344243	76005297	495	124505											
SRP54	6729	broad.mit.edu	37	chr14	35480660	35480662	+	Intron	DEL	TAG	-	-													ggtaaattaactttccgaatTagtagtatttggaagttttg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35480662	-	-	35480660	6	5	144	0	1	1	0	1	0	0	0	0	15273	1769	61	0		0	SRP54	14	35480660	Intron	DEL	TAG	TCGA-49-6742-01A-11D-1855-08	4136417	35480660	71868880	496	124506											
EXOC5	10640	broad.mit.edu	37	chr14	57698506	57698506	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatattaaggaatacaaaTttttacaacgtgactttcat	4	6	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57698506	C	C	57698506	1	2	144	0	1	0	0	0	0	0	0	0	5349	1508	52	5		5	EXOC5	14	57698506	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	22217846	57698506	49651034	497	124507											
DACT1	51339	broad.mit.edu	37	chr14	59105173	59105173	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgggagccgctgcgcccCgcgctggggagctactgggg	20	13	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59105173	T	T	59105173	3	4	144	1	0	0	0	0	1	0	0	0	4255	652	23	4	255	4	DACT1	14	59105173	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1406667	59105173	48244367	498	124508											
CHURC1	91612	broad.mit.edu	37	chr14	65399021	65399021	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcctgatggtttgtcttaTttcattcatactgaaaattc	6	7	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65399021	C	C	65399021	1	2	144	0	1	0	0	0	0	0	0	0	3448	1508	52	5		5	CHURC1	14	65399021	3'UTR	SNP	T	TCGA-49-6742-01A-11D-1855-08	6293848	65399021	41950519	499	124509											
GPHN	10243	broad.mit.edu	37	chr14	67147795	67147795	+	Intron	DEL	T	-	-													gaaatgtagacaaaaattaaTttttttttcttttccccatt							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67147795	-	-	67147795	6	5	144	0	1	1	0	1	0	0	0	0	6675	1508	52	0		0	GPHN	14	67147795	Intron	DEL	T	TCGA-49-6742-01A-11D-1855-08	1748774	67147795	40201745	500	124510											
GPHN	10243	broad.mit.edu	37	chr14	67490429	67490429	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctggtgggctgctgaactAgagcttataaagctaaaaat	10	6	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67490429	G	G	67490429	1	3	144	0	1	0	0	0	0	0	0	0	6675	435	15	5		5	GPHN	14	67490429	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	342634	67490429	39859111	501	124511											
FAM71D	161142	broad.mit.edu	37	chr14	67666105	67666105	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaatgggaacctggaccctGagattgatgagaagttgctt	12	7	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67666105	C	C	67666105	1	2	144	0	1	0	0	0	0	0	0	0	5661	1305	45	4		4	FAM71D	14	67666105	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	175676	67666105	39683435	502	124512											
ARG2	384	broad.mit.edu	37	chr14	68113759	68113759	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaagtaagtaactataactGatgtcagggcaaacccccaa	8	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68113759	T	T	68113759	1	4	144	0	1	0	0	0	0	0	0	0	860	1305	45	3		3	ARG2	14	68113759	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	447654	68113759	39235781	503	124513											
SFRS5	6430	broad.mit.edu	37	chr14	70237122	70237122	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagtcttgttttttttatatCatgtgattgtttgtgtgtcc	8	4	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70237122	G	G	70237122	1	3	144	0	1	0	0	0	0	0	0	0	14293	841	29	4		4	SFRS5	14	70237122	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2123363	70237122	37112418	504	124514											
PCNX	22990	broad.mit.edu	37	chr14	71476483	71476483	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtgtgtactttcatatGtttgccatatttaatgtttt	8	4	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71476483	A	A	71476483	1	1	144	0	1	0	0	0	0	0	0	0	11685	1392	48	4		4	PCNX	14	71476483	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1239361	71476483	35873057	505	124515											
SIPA1L1	26037	broad.mit.edu	37	chr14	72190691	72190691	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtgatctcttacaacaaaaGaggccgggctagggggttgg	15	8	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72190691	C	C	72190691	1	2	144	0	1	0	0	0	0	0	0	0	14442	957	33	4		4	SIPA1L1	14	72190691	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	714208	72190691	35158849	506	124516											
RGS6	9628	broad.mit.edu	37	chr14	72945014	72945014	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagatcgacagacattgtttGaaaatgtccaaagtggctga	10	7	0	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72945014	C	C	72945014	3	2	144	1	0	0	0	0	1	0	0	0	13418	1281	45	4	873	4	RGS6	14	72945014	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	754323	72945014	34404526	507	124517											
DNAL1	83544	broad.mit.edu	37	chr14	74154042	74154042	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagggatccacataatgaaGaaattgaagattctctacat	7	6	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74154042	A	A	74154042	2	1	144	1	0	0	0	0	0	0	0	1	4697	933	33	4		4	DNAL1	14	74154042	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1209028	74154042	33195498	508	124518											
NRXN3	9369	broad.mit.edu	37	chr14	79175708	79175708	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgagaccccagaggcttAcatcagcttgcccaagtgga	10	12	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79175708	C	C	79175708	3	2	144	1	0	0	0	0	1	0	0	0	10762	391	14	5	257	5	NRXN3	14	79175708	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	5021666	79175708	28173832	509	124519											
TSHR	7253	broad.mit.edu	37	chr14	81499329	81499329	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaaggtgcaccaaaAgtcaagctgctgtgtggggc	12	8	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81499329	C	C	81499329	1	2	144	0	1	0	0	0	0	0	0	0	16747	87	3	5		5	TSHR	14	81499329	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	2323621	81499329	25850211	510	124520											
TSHR	7253	broad.mit.edu	37	chr14	81610780	81610780	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccaatcccatgacacccCcaacacatagctgccctcac	3	19	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81610780	A	A	81610780	1	1	144	0	1	0	0	0	0	0	0	0	16747	638	22	2		2	TSHR	14	81610780	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	111451	81610780	25738760	511	124521											
SEL1L	6400	broad.mit.edu	37	chr14	82000001	82000001	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggctctgggccttcagcccGagggggcggatactgacccg	16	13	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82000001	A	A	82000001	1	1	144	0	1	0	0	0	0	0	0	0	14123	1073	37	4		4	SEL1L	14	82000001	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	389221	82000001	25349539	512	124522											
CCDC88C	440193	broad.mit.edu	37	chr14	91776106	91776106	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtcacagccctcggcagtaGagagttcatggaggtctcag	14	10	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91776106	C	C	91776106	1	2	144	0	1	0	0	0	0	0	0	0	2893	957	33	4		4	CCDC88C	14	91776106	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	9776105	91776106	15573434	513	124523											
BAG5	9529	broad.mit.edu	37	chr14	104026973	104026973	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacggaaggatgtgcatcctCggaaagcggcagggaaggct	16	8	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104026973	T	T	104026973	3	4	144	1	0	0	0	0	1	0	0	0	1295	893	31	4	818	4	BAG5	14	104026973	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	12250867	104026973	3322567	514	124524											
PACS2	23241	broad.mit.edu	37	chr14	105814832	105814840	+	In_Frame_Del	DEL	TGTGCAGCC	-	-													ctgtgccttgcctcacaggtTgtgcagcctgactctgaaga							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105814840	-	-	105814832	7	5	144	1	0	1	0	1	0	0	0	0	11467	1821	63	0	128	0	PACS2	14	105814832	In_Frame_Del	DEL	TGTGCAGCC	TCGA-49-6742-01A-11D-1855-08	1787859	105814832	1534708	515	124525											
SNRPN	6638	broad.mit.edu	37	chr15	25230377	25230377	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acataaattcttagactctaAatttcacatggtttttccta	3	8	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25230377	G	G	25230377	1	3	144	0	1	0	0	0	0	0	0	0	14984	29	1	5		5	SNRPN	15	25230377	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08		25230377	77301015	516	124526											
ATP10A	57194	broad.mit.edu	37	chr15	25962125	25962125	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtagcctgccgaggatcTtggggcgtgactatttaagg	14	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25962125	A	A	25962125	1	1	144	0	1	0	0	0	0	0	0	0	1120	1624	56	5		5	ATP10A	15	25962125	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	731748	25962125	76569267	517	124527											
GJD2	57369	broad.mit.edu	37	chr15	35044898	35044898	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacactagaaagacagtcttCtcagttggccgggacacata	9	10	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35044898	G	G	35044898	3	3	144	1	0	0	0	0	1	0	0	0	6481	912	32	4	222	4	GJD2	15	35044898	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	9082773	35044898	67486494	518	124528											
MEIS2	4212	broad.mit.edu	37	chr15	37187188	37187188	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtaaaatctttactttttCaaagaggaattttttccccc	5	8	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37187188	T	T	37187188	1	4	144	0	1	0	0	0	0	0	0	0	9561	841	29	4		4	MEIS2	15	37187188	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2142290	37187188	65344204	519	124529											
INO80	54617	broad.mit.edu	37	chr15	41373176	41373176	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaaagaagaagaatatattCcagcaaaacatgaaatggaa	7	6	0	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41373176	A	A	41373176	1	1	144	0	1	0	0	0	0	0	0	0	7816	870	30	3		3	INO80	15	41373176	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	4185988	41373176	61158216	520	124530											
PLA2G4D	283748	broad.mit.edu	37	chr15	42378515	42378515	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcctccgtgactgagtcctCatcatagatgctaagctcca	7	13	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42378515	T	T	42378515	3	4	144	1	0	0	0	0	1	0	0	0	12099	835	29	4	2241	4	PLA2G4D	15	42378515	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1005339	42378515	60152877	521	124531											
PLA2G4F	255189	broad.mit.edu	37	chr15	42437819	42437819	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccaggaagctgaggccCgagccggcggtctttaggaa	14	12	1	1	rs115928111	byFrequency	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42437819	A	A	42437819	2	1	144	1	0	0	0	0	0	0	0	1	12101	639	23	1		1	PLA2G4F	15	42437819	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	59304	42437819	60093573	522	124532											
C15orf43	145645	broad.mit.edu	37	chr15	45270711	45270711	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatcaattgatgccatgaAgaaattccttggggagctac	9	7	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45270711	G	G	45270711	3	3	144	1	0	0	0	0	1	0	0	0	1810	72	3	5	574	5	C15orf43	15	45270711	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	2832892	45270711	57260681	523	124533											
MYEF2	50804	broad.mit.edu	37	chr15	48446077	48446078	+	Missense_Mutation	DNP	GC	AA	AA													ggaccaagtcccatcccaatGcctccaagaccacctaaaac							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	48446078	AA	AA	48446077	3	1	144	1	0	0	0	0	1	0	0	0	10118	1306	46	4	835	4	MYEF2	15	48446077	Missense_Mutation	DNP	GC	TCGA-49-6742-01A-11D-1855-08	3175366	48446077	54085315	524	124534											
SHC4	399694	broad.mit.edu	37	chr15	49148057	49148057	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaggaagacaggactttctCtaaactagcatttggaaatc	9	7	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49148057	G	G	49148057	1	3	144	0	1	0	0	0	0	0	0	0	14386	928	32	4		4	SHC4	15	49148057	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	701980	49148057	53383335	525	124535											
DYX1C1	161582	broad.mit.edu	37	chr15	55790480	55790480	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggcagagacagaaagacCgcagtcttcgtctgctgcca	13	11	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55790480	A	A	55790480	2	1	144	1	0	0	0	0	0	0	0	1	4902	639	23	1		1	DYX1C1	15	55790480	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	6642423	55790480	46740912	526	124536											
LIPC	3990	broad.mit.edu	37	chr15	58834725	58834725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccccatcccgctgctgTcttccaggaatctgtgcaac	8	17	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58834725	C	C	58834725	1	2	144	0	1	0	0	0	0	0	0	0	8893	1682	58	5		5	LIPC	15	58834725	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	3044245	58834725	43696667	527	124537											
MEGF11	84465	broad.mit.edu	37	chr15	66190517	66190517	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagagttctacttaacttGgggaaaggagccagggattt	13	5	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66190517	C	C	66190517	1	2	144	0	1	0	0	0	0	0	0	0	9554	1363	47	4		4	MEGF11	15	66190517	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	7355792	66190517	36340875	528	124538											
ACAN	176	broad.mit.edu	37	chr15	89399981	89399981	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agactgctgcccctggagtaGaggacatcagcgggcttcct	13	12	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89399981	C	C	89399981	3	2	144	1	0	0	0	0	1	0	0	0	117	943	33	4	4207	4	ACAN	15	89399981	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	23209464	89399981	13131411	529	124539											
POLG	5428	broad.mit.edu	37	chr15	89862318	89862318	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagcaaccacctcccacttCttccactgtgacctaaggga	6	16	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89862318	G	G	89862318	3	3	144	1	0	0	0	0	1	0	0	0	12295	912	32	4	618	4	POLG	15	89862318	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	462337	89862318	12669074	530	124540											
POLG	5428	broad.mit.edu	37	chr15	89862396	89862396	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagctaaaaaacaaagcatCcaagctcttctggggcaagc	8	10	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89862396	G	G	89862396	1	3	144	0	1	0	0	0	0	0	0	0	12295	870	30	4		4	POLG	15	89862396	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	78	89862396	12668996	531	124541											
SEMA4B	10509	broad.mit.edu	37	chr15	90760893	90760893	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaccacagagggaagatggAcgggaagcttgaccttctgg	16	8	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90760893	T	T	90760893	1	4	144	0	1	0	0	0	0	0	0	0	14145	290	10	5		5	SEMA4B	15	90760893	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	898497	90760893	11770499	532	124542											
MCTP2	55784	broad.mit.edu	37	chr15	94858848	94858848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggaaggccggaacctgGttgtccgagatcgctgtggt	16	8	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94858848	T	T	94858848	3	4	144	1	0	0	0	0	1	0	0	0	9494	1261	44	3	629	3	MCTP2	15	94858848	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	4097955	94858848	7672544	533	124543											
LRRK1	79705	broad.mit.edu	37	chr15	101593183	101593183	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgagggcagcgtcctggGccagggcggcagtggcaccg	20	12	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101593183	A	A	101593183	3	1	144	1	0	0	0	0	1	0	0	0	9119	1203	42	4	3840	4	LRRK1	15	101593183	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	6734335	101593183	938209	534	124544											
LMF1	64788	broad.mit.edu	37	chr16	921433	921433	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggagcagggaggggggaGggaacctgcacccagctctg	18	11	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	921433	A	A	921433	1	1	144	0	1	0	0	0	0	0	0	0	8919	1015	35	4		4	LMF1	16	921433	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08		921433	89433320	535	124545											
TELO2	9894	broad.mit.edu	37	chr16	1555456	1555456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctaggcctgggtgcctcGggaggactccccaacctggc	14	14	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1555456	T	T	1555456	3	4	144	1	0	0	0	0	1	0	0	0	15879	1116	39	1	1946	1	TELO2	16	1555456	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	634023	1555456	88799297	536	124546											
GLYR1	84656	broad.mit.edu	37	chr16	4861378	4861378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaccaggtgtcagtacctAaaacatactcagggctcagt	8	12	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4861378	G	G	4861378	1	3	144	0	1	0	0	0	0	0	0	0	6547	377	13	5		5	GLYR1	16	4861378	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	3305922	4861378	85493375	537	124547											
C16orf68	79091	broad.mit.edu	37	chr16	8734958	8734958	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgatgatgtttagagtttGgaaagttctctttttgtttg	10	4	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8734958	C	C	8734958	1	2	144	0	1	0	0	0	0	0	0	0	1841	1363	47	4		4	C16orf68	16	8734958	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	3873580	8734958	81619795	538	124548											
CIITA	4261	broad.mit.edu	37	chr16	10996625	10996625	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggcaaatctctgaggctGgaacaggggtctccagtata	12	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10996625	T	T	10996625	4	4	144	1	0	0	0	0	0	1	0	0	3459	1349	47	2	769	2	CIITA	16	10996625	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	2261667	10996625	79358128	539	124549											
ACSM2A	123876	broad.mit.edu	37	chr16	20494253	20494253	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttttctccttttcccttgaCctggatcaccgggggtgcaa	10	12	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20494253	G	G	20494253	1	3	144	0	1	0	0	0	0	0	0	0	183	522	18	4		4	ACSM2A	16	20494253	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	9497628	20494253	69860500	540	124550											
EEF2K	29904	broad.mit.edu	37	chr16	22268436	22268436	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggtccctgcccaactgaaGaggcctttttcctttgtctt	8	12	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22268436	C	C	22268436	1	2	144	0	1	0	0	0	0	0	0	0	4970	957	33	4		4	EEF2K	16	22268436	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1774183	22268436	68086317	541	124551											
PRKCB	5579	broad.mit.edu	37	chr16	23847514	23847514	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatggctgacccggctgcGgggccgccgccgagcgaggg	19	13	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23847514	T	T	23847514	2	4	144	1	0	0	0	0	0	0	0	1	12614	1103	39	1		1	PRKCB	16	23847514	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	1579078	23847514	66507239	542	124552											
PRKCB	5579	broad.mit.edu	37	chr16	24185905	24185905	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggcatcatttaccggtaAgtgaacactgctgtactttc	9	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24185905	C	C	24185905	1	2	144	0	1	0	0	0	0	0	0	0	12614	87	3	5		5	PRKCB	16	24185905	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	338391	24185905	66168848	543	124553											
RBBP6	5930	broad.mit.edu	37	chr16	24582309	24582309	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgacaataccgcgccagctGaagatgttatcattatgatt	8	8	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24582309	T	T	24582309	4	4	144	1	0	0	0	0	0	1	0	0	13211	1291	45	3	4046	3	RBBP6	16	24582309	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	396404	24582309	65772444	544	124554											
ABCC11	85320	broad.mit.edu	37	chr16	48201504	48201504	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccctggaaggcttcacggAttgtgcgctggatcagggtg	16	9	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48201504	T	T	48201504	3	4	144	1	0	0	0	0	1	0	0	0	51	333	12	5	197	5	ABCC11	16	48201504	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	23619195	48201504	42153249	545	124555											
SALL1	6299	broad.mit.edu	37	chr16	51174300	51174300	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagagtggacccttcggcTtcctctgggagcccacctag	13	14	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51174300	G	G	51174300	3	3	144	1	0	0	0	0	1	0	0	0	13921	1606	56	5	2149	5	SALL1	16	51174300	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	2972796	51174300	39180453	546	124556											
NLRC5	84166	broad.mit.edu	37	chr16	57047850	57047850	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaatttttactgcacacaGattcagaatttcaaatgtct	4	8	4	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57047850	A	A	57047850	1	1	144	0	1	0	0	0	0	0	0	0	10565	957	33	4		4	NLRC5	16	57047850	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	5873550	57047850	33306903	547	124557											
CCDC135	84229	broad.mit.edu	37	chr16	57765098	57765098	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacaaggaactggccccactGaagtacctggctctggagga	12	12	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57765098	T	T	57765098	2	4	144	1	0	0	0	0	0	0	0	1	2795	1277	45	3		3	CCDC135	16	57765098	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	717248	57765098	32589655	548	124558											
CDH8	1006	broad.mit.edu	37	chr16	61859003	61859003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccaccagagtgtccacCcatatctttggcttggataa	9	12	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61859003	A	A	61859003	3	1	144	1	0	0	0	0	1	0	0	0	3146	623	22	2	1683	2	CDH8	16	61859003	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	4093905	61859003	28495750	549	124559											
FHOD1	29109	broad.mit.edu	37	chr16	67263491	67263491	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctcctcactctgtcatctCctgcactgcagtccagggtc	7	18	4	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67263491	T	T	67263491	1	4	144	0	1	0	0	0	0	0	0	0	5939	870	30	4		4	FHOD1	16	67263491	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	5404488	67263491	23091262	550	124560											
ATP6V0D1	9114	broad.mit.edu	37	chr16	67514999	67514999	+	5'UTR	SNP	G	A	A													aagaacgacatggctgctgcGggagcggcgggaccggagaa							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67514999	A	A	67514999	1	1	144	0	1	0	0	0	0	0	0	0	1177	1131	39	4		4	ATP6V0D1	16	67514999	5'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	251508	67514999	22839754	551	124561	541	2									
ATP6V0D1	9114	broad.mit.edu	37	chr16	67515001	67515001	+	5'UTR	SNP	G	A	A													gaacgacatggctgctgcggGagcggcgggaccggagaacc							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67515001	A	A	67515001	1	1	144	0	1	0	0	0	0	0	0	0	1177	1189	41	4		4	ATP6V0D1	16	67515001	5'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	2	67515001	22839752	552	124562	541	2									
RANBP10	57610	broad.mit.edu	37	chr16	67805824	67805824	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaaccagtagcatggcttGaggtaggcagctagcaaaca	11	10	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67805824	A	A	67805824	1	1	144	0	1	0	0	0	0	0	0	0	13134	1305	45	4		4	RANBP10	16	67805824	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	290823	67805824	22548929	553	124563											
SMPD3	55512	broad.mit.edu	37	chr16	68405584	68405584	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggagtcgatgtaaattttGatctggggccgggcggcccc	17	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68405584	T	T	68405584	2	4	144	1	0	0	0	0	0	0	0	1	14920	1280	45	3		3	SMPD3	16	68405584	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	599760	68405584	21949169	554	124564											
WWP2	11060	broad.mit.edu	37	chr16	69971205	69971205	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgatcctgctctgtgataCgctcactgtgtacccacaga	10	13	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69971205	T	T	69971205	1	4	144	0	1	0	0	0	0	0	0	0	17543	551	19	4		4	WWP2	16	69971205	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1565621	69971205	20383548	555	124565											
PMFBP1	83449	broad.mit.edu	37	chr16	72162829	72162829	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcattctcgctcccctcctCgctggcctttcccactgtcc	7	20	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72162829	T	T	72162829	1	4	144	0	1	0	0	0	0	0	0	0	12229	899	31	4		4	PMFBP1	16	72162829	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2191624	72162829	18191924	556	124566											
ADAMTS18	170692	broad.mit.edu	37	chr16	77465343	77465343	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgactgctcaaaatcgccGagggcttaagttctaagtgc	11	9	2	1	rs145596475		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77465343	A	A	77465343	3	1	144	1	0	0	0	0	1	0	0	0	263	1059	37	4	3405	4	ADAMTS18	16	77465343	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	5302514	77465343	12889410	557	124567											
PKD1L2	114780	broad.mit.edu	37	chr16	81157238	81157238	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagccctgcagagggttcCcaggcgaggctgcccaccca	14	15	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81157238	G	G	81157238	1	3	144	0	1	0	0	0	0	0	0	0	12060	638	22	4		4	PKD1L2	16	81157238	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	3691895	81157238	9197515	558	124568											
BCMO1	53630	broad.mit.edu	37	chr16	81324006	81324006	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaaagctgccttttctgCtcattctggatgccaaaagc	7	13	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81324006	T	T	81324006	3	4	144	1	0	0	0	0	1	0	0	0	1389	797	28	4	1510	4	BCMO1	16	81324006	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	166768	81324006	9030747	559	124569											
SLC7A5	8140	broad.mit.edu	37	chr16	87866630	87866630	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacacaggacggtcgtggaGactgtcaggagagaagacag	16	7	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87866630	C	C	87866630	3	2	144	1	0	0	0	0	1	0	0	0	14814	956	33	4	57	4	SLC7A5	16	87866630	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	6542624	87866630	2488123	560	124570											
DPEP1	1800	broad.mit.edu	37	chr16	89703660	89703660	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtcctcatcgacttggctCacgtgtctgtggccaccatg	12	13	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89703660	T	T	89703660	3	4	144	1	0	0	0	0	1	0	0	0	4753	826	29	4	662	4	DPEP1	16	89703660	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1837030	89703660	651093	561	124571											
RILP	83547	broad.mit.edu	37	chr17	1552103	1552103	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggcactcaccgggtcctcaGggttccctggggcgcctgcg	15	16	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1552103	C	C	1552103	3	2	144	1	0	0	0	0	1	0	0	0	13469	1000	35	4	560	4	RILP	17	1552103	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08		1552103	79643107	562	124572											
DPH1	1801	broad.mit.edu	37	chr17	1936833	1936833	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccgcgtggccaatcagatCccccctgagatcctgaagaa	11	14	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1936833	T	T	1936833	2	4	144	1	0	0	0	0	0	0	0	1	4759	845	30	4		4	DPH1	17	1936833	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	384730	1936833	79258377	563	124573											
OR1G1	8390	broad.mit.edu	37	chr17	3030291	3030291	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggtctgtgcaggacagactCaggaggggattgatgtcaca	16	7	3	2	rs61736116	byFrequency;by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3030291	G	G	3030291	2	3	144	1	0	0	0	0	0	0	0	1	11051	813	29	4		4	OR1G1	17	3030291	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1093458	3030291	78164919	564	124574											
ENO3	2027	broad.mit.edu	37	chr17	4859788	4859788	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgcttgctacccaaaacaGaagggagaggccccacccaa	10	13	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4859788	A	A	4859788	1	1	144	0	1	0	0	0	0	0	0	0	5165	957	33	4		4	ENO3	17	4859788	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1829497	4859788	76335422	565	124575											
KIAA0753	9851	broad.mit.edu	37	chr17	6483287	6483287	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaagatggacagatcacctGaggtcaggagtttgagacca	12	9	2	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6483287	A	A	6483287	1	1	144	0	1	0	0	0	0	0	0	0	8261	1305	45	4		4	KIAA0753	17	6483287	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1623499	6483287	74711923	566	124576											
TMEM107	84314	broad.mit.edu	37	chr17	8077424	8077424	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccagcagaagcagtttccGaggggaaaaccgaagcctat	11	11	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8077424	A	A	8077424	1	1	144	0	1	0	0	0	0	0	0	0	16146	1073	37	4		4	TMEM107	17	8077424	3'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	1594137	8077424	73117786	567	124577											
GLP2R	9340	broad.mit.edu	37	chr17	9792772	9792772	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcctggggaaggactTccggttcctaggaaaatgtc	13	9	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9792772	G	G	9792772	3	3	144	1	0	0	0	0	1	0	0	0	6517	1783	62	5	1462	5	GLP2R	17	9792772	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	1715348	9792772	71402438	568	124578											
MYH4	4622	broad.mit.edu	37	chr17	10361078	10361078	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaagggatgataatgatGagtccctcagaaagttatgc	10	5	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10361078	A	A	10361078	1	1	144	0	1	0	0	0	0	0	0	0	10131	1305	45	4		4	MYH4	17	10361078	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	568306	10361078	70834132	569	124579											
MYH3	4621	broad.mit.edu	37	chr17	10558037	10558037	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttctctgaggatacctggGaagccccaggctacattgta	10	11	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10558037	A	A	10558037	1	1	144	0	1	0	0	0	0	0	0	0	10130	1189	41	4		4	MYH3	17	10558037	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	196959	10558037	70637173	570	124580											
EPN2	22905	broad.mit.edu	37	chr17	19216480	19216480	+	Frame_Shift_Del	DEL	C	-	-													gatgctctccccagctcgggCcccgcggcccagaaagcaga							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19216480	-	-	19216480	7	5	144	1	0	1	0	1	0	0	0	0	5228	726	26	0	1053	0	EPN2	17	19216480	Frame_Shift_Del	DEL	C	TCGA-49-6742-01A-11D-1855-08	8658443	19216480	61978730	571	124581											
ALDH3A2	224	broad.mit.edu	37	chr17	19568163	19568163	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agccagaatgtgcatgctttGagcacataactgagcacaca	9	10	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19568163	C	C	19568163	1	2	144	0	1	0	0	0	0	0	0	0	498	1305	45	4		4	ALDH3A2	17	19568163	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	351683	19568163	61627047	572	124582											
LGALS9	3965	broad.mit.edu	37	chr17	25976035	25976035	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggccctggggccggggGctggggtgtggggcagtctg	22	10	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25976035	T	T	25976035	1	4	144	0	1	0	0	0	0	0	0	0	8820	1218	42	3		3	LGALS9	17	25976035	3'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	6407872	25976035	55219175	573	124583											
POLDIP2	26073	broad.mit.edu	37	chr17	26680307	26680307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgactgtcatcatggttagcCaagaaggtcacagcttctgt	10	10	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26680307	A	A	26680307	3	1	144	1	0	0	0	0	1	0	0	0	12289	593	21	2	660	2	POLDIP2	17	26680307	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	704272	26680307	54514903	574	124584											
SDF2	6388	broad.mit.edu	37	chr17	26982864	26982864	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgaccttaagaaaccagaGacatggctaagcctttgtaa	9	8	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26982864	C	C	26982864	1	2	144	0	1	0	0	0	0	0	0	0	14073	957	33	4		4	SDF2	17	26982864	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	302557	26982864	54212346	575	124585											
SUPT6H	6830	broad.mit.edu	37	chr17	27008931	27008931	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggcagaagatgaggagcaGagggggcctgagctcaagca	18	7	1	5			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27008931	A	A	27008931	2	1	144	1	0	0	0	0	0	0	0	1	15518	933	33	4		4	SUPT6H	17	27008931	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	26067	27008931	54186279	576	124586											
PHF12	57649	broad.mit.edu	37	chr17	27248873	27248873	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctatccctggcttcagagttCctagcctgcaatatggaaac	8	12	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27248873	T	T	27248873	1	4	144	0	1	0	0	0	0	0	0	0	11918	870	30	4		4	PHF12	17	27248873	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	239942	27248873	53946337	577	124587											
RAD51L3	5892	broad.mit.edu	37	chr17	33445681	33445681	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagcaacaaattgcccgtaGaagctggcatcccagggtgt	11	11	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33445681	T	T	33445681	1	4	144	0	1	0	0	0	0	0	0	0	13098	957	33	3		3	RAD51L3	17	33445681	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	6196808	33445681	47749529	578	124588											
MRM1	79922	broad.mit.edu	37	chr17	34958970	34958970	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcctaatgcggggaacgggGaaaccttgcagctgcccgct	14	12	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34958970	A	A	34958970	1	1	144	0	1	0	0	0	0	0	0	0	9865	1189	41	4		4	MRM1	17	34958970	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1513289	34958970	46236240	579	124589											
WIPF2	147179	broad.mit.edu	37	chr17	38434499	38434499	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctggcttggtcccgttccTcaggaaaaggatggaccttc	12	12	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38434499	C	C	38434499	1	2	144	0	1	0	0	0	0	0	0	0	17495	1566	54	5		5	WIPF2	17	38434499	3'UTR	SNP	T	TCGA-49-6742-01A-11D-1855-08	3475529	38434499	42760711	580	124590											
STAT3	6774	broad.mit.edu	37	chr17	40498730	40498730	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgctggccgcatatgCcctaggaaaaggaagaatga	11	8	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40498730	T	T	40498730	3	4	144	1	0	0	0	0	1	0	0	0	15384	753	26	4	2270	4	STAT3	17	40498730	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2064231	40498730	40696480	581	124591											
BRCA1	672	broad.mit.edu	37	chr17	41291037	41291037	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaattgcctatatacaaccCctttttgtttgaaatatcta	3	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41291037	G	G	41291037	1	3	144	0	1	0	0	0	0	0	0	0	1507	638	22	4		4	BRCA1	17	41291037	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	792307	41291037	39904173	582	124592											
TMUB2	79089	broad.mit.edu	37	chr17	42267747	42267747	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaaaaaaaaggataaaGatgagggaaaaaaaaatcca	7	2	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42267747	A	A	42267747	1	1	144	0	1	0	0	0	0	0	0	0	16388	957	33	4		4	TMUB2	17	42267747	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	976710	42267747	38927463	583	124593											
SLC25A39	51629	broad.mit.edu	37	chr17	42398804	42398804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaagactatgctcacggCgggccagcgcgccagccacc	12	18	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42398804	A	A	42398804	3	1	144	1	0	0	0	0	1	0	0	0	14617	768	27	3	588	3	SLC25A39	17	42398804	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	131057	42398804	38796406	584	124594											
KIAA1267	284058	broad.mit.edu	37	chr17	44117133	44117133	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctgaatctggcagactgCccggcatgggtgctctgtgc	15	11	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44117133	T	T	44117133	3	4	144	1	0	0	0	0	1	0	0	0	8289	739	26	4	1211	4	KIAA1267	17	44117133	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1718329	44117133	37078077	585	124595											
GOSR2	9570	broad.mit.edu	37	chr17	45095927	45095927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctcccaccatccagcacGggggcccacatctgcttcca	7	19	1	0	rs115948616	by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45095927	T	T	45095927	1	4	144	0	1	0	0	0	0	0	0	0	6642	1131	39	1		1	GOSR2	17	45095927	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	978794	45095927	36099283	586	124596											
GOSR2	9570	broad.mit.edu	37	chr17	45097003	45097003	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttacatccaagataaggcTttaactgcaccagaggaaca	8	9	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45097003	C	C	45097003	1	2	144	0	1	0	0	0	0	0	0	0	6642	1624	56	5		5	GOSR2	17	45097003	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	1076	45097003	36098207	587	124597											
HOXB3	3213	broad.mit.edu	37	chr17	46629586	46629586	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggtgagccaggcggggccGacaggggctcgggggccaga	23	10	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46629586	A	A	46629586	3	1	144	1	0	0	0	0	1	0	0	0	7369	1059	37	4	1052	4	HOXB3	17	46629586	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	1532583	46629586	34565624	588	124598											
NME1-NME2	654364	broad.mit.edu	37	chr17	49245626	49245626	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaagaacacctgaagcaGcactacattgacctgaaaga	8	10	1	6			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49245626	A	A	49245626	2	1	144	1	0	0	0	0	0	0	0	1	10585	962	34	4		4	NME1-NME2	17	49245626	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	2616040	49245626	31949584	589	124599											
KIF2B	84643	broad.mit.edu	37	chr17	51901606	51901606	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagtgctgaacctggtGgaaatagggaatagctgtcg	16	5	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901606	T	T	51901606	2	4	144	1	0	0	0	0	0	0	0	1	8368	1335	47	2		2	KIF2B	17	51901606	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	2655980	51901606	29293604	590	124600											
DCAF7	10238	broad.mit.edu	37	chr17	61627972	61627972	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccttcggacccatagatctCaggctcggctccccgcccgc	9	20	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61627972	G	G	61627972	1	3	144	0	1	0	0	0	0	0	0	0	4308	841	29	4		4	DCAF7	17	61627972	5'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	9726366	61627972	19567238	591	124601											
ARMC7	79637	broad.mit.edu	37	chr17	73125037	73125037	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagatcttcctggaggacttCtgctccccccgccaggtggc	11	16	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73125037	T	T	73125037	2	4	144	1	0	0	0	0	0	0	0	1	960	912	32	4		4	ARMC7	17	73125037	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	11497065	73125037	8070173	592	124602											
ARMC7	79637	broad.mit.edu	37	chr17	73125236	73125236	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgccccattggtgccttttCagccatctgaaaggcgggtt	11	12	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73125236	T	T	73125236	1	4	144	0	1	0	0	0	0	0	0	0	960	841	29	4		4	ARMC7	17	73125236	3'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	199	73125236	8069974	593	124603											
SLC25A19	60386	broad.mit.edu	37	chr17	73274489	73274489	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacagcccatcatagctctGtcccctcgcctaaaatacca	5	16	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73274489	C	C	73274489	1	2	144	0	1	0	0	0	0	0	0	0	14595	1392	48	4		4	SLC25A19	17	73274489	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	149253	73274489	7920721	594	124604											
RNF213	57674	broad.mit.edu	37	chr17	78321478	78321478	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctacgagagcctctacgacGcactcaaccagtactacgtc	7	15	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78321478	A	A	78321478	3	1	144	1	0	0	0	0	1	0	0	0	13588	1087	38	4	9772	4	RNF213	17	78321478	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	5046989	78321478	2873732	595	124605											
AATK	9625	broad.mit.edu	37	chr17	79093923	79093923	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaggtagctcggccgccagGagccgcggccgctcccaccc	13	20	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79093923	A	A	79093923	1	1	144	0	1	0	0	0	0	0	0	0	26	1189	41	4		4	AATK	17	79093923	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	772445	79093923	2101287	596	124606											
FAM38B	63895	broad.mit.edu	37	chr18	10691237	10691237	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctacccttggaataagaaGaggttgacgtaattgtagct	10	7	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10691237	C	C	10691237	2	2	144	1	0	0	0	0	0	0	0	1	5606	929	33	4		4	FAM38B	18	10691237	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08		10691237	67386011	597	124607											
CEP76	79959	broad.mit.edu	37	chr18	12695285	12695285	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacttcttgagataacgtttGattgagtggtggatacattt	10	4	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12695285	C	C	12695285	3	2	144	1	0	0	0	0	1	0	0	0	3291	1299	45	4	1235	4	CEP76	18	12695285	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	2004048	12695285	65381963	598	124608											
C18orf1	753	broad.mit.edu	37	chr18	13620998	13620998	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcctgctggcctctgAggaacagacgtgtgtgagag	15	9	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13620998	T	T	13620998	1	4	144	0	1	0	0	0	0	0	0	0	1912	319	11	5		5	C18orf1	18	13620998	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	925713	13620998	64456250	599	124609											
LAMA3	3909	broad.mit.edu	37	chr18	21526203	21526203	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaactccaccatcagcatCagagcgccagtttacctggg	10	13	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21526203	T	T	21526203	2	4	144	1	0	0	0	0	0	0	0	1	8679	816	29	4		4	LAMA3	18	21526203	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	7905205	21526203	56551045	600	124610											
ZNF521	25925	broad.mit.edu	37	chr18	22806029	22806029	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctactgcctgcatcatcTtaagagatgtctgctctatg	7	12	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22806029	G	G	22806029	3	3	144	1	0	0	0	0	1	0	0	0	18092	1609	56	5	2102	5	ZNF521	18	22806029	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	1279826	22806029	55271219	601	124611											
DSC2	1824	broad.mit.edu	37	chr18	28660165	28660165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaacagtctgtattggagGgttacactcagggccctcat	12	10	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28660165	T	T	28660165	3	4	144	1	0	0	0	0	1	0	0	0	4806	1232	43	2	1356	2	DSC2	18	28660165	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	5854136	28660165	49417083	602	124612											
ASXL3	80816	broad.mit.edu	37	chr18	31323324	31323324	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagatctcctagcaacaAgtctgcccacctccgggaga	9	14	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323324	T	T	31323324	3	4	144	1	0	0	0	0	1	0	0	0	1072	72	3	5	3558	5	ASXL3	18	31323324	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	2663159	31323324	46753924	603	124613											
RIT2	6014	broad.mit.edu	37	chr18	40323480	40323480	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtcatattttctctcttcTtcttcaaagaacctttgagc	4	10	6	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40323480	G	G	40323480	3	3	144	1	0	0	0	0	1	0	0	0	13498	1609	56	5	25	5	RIT2	18	40323480	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	9000156	40323480	37753768	604	124614											
PIAS2	9063	broad.mit.edu	37	chr18	44435122	44435122	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttatgttttccatctccttCagacctgaaataagccattt	4	11	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44435122	G	G	44435122	1	3	144	0	1	0	0	0	0	0	0	0	11971	841	29	4		4	PIAS2	18	44435122	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	4111642	44435122	33642126	605	124615											
ZNF532	55205	broad.mit.edu	37	chr18	56648817	56648817	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatgacagatgccaccaatGaggaggaaacagaaataaaa	9	6	0	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56648817	T	T	56648817	4	4	144	1	0	0	0	0	0	1	0	0	18099	1291	45	3	3405	3	ZNF532	18	56648817	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	12213695	56648817	21428431	606	124616											
CDH19	28513	broad.mit.edu	37	chr18	64218487	64218487	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccattttagaagatattcTtatgactcctttaaaaatat	3	6	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64218487	C	C	64218487	3	2	144	1	0	0	0	0	1	0	0	0	3134	1617	56	5	1731	5	CDH19	18	64218487	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	7569670	64218487	13858761	607	124617											
RTTN	25914	broad.mit.edu	37	chr18	67781559	67781559	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaacactataactgattatTatttaagtatttgaaagaag	6	3	0	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67781559	C	C	67781559	1	2	144	0	1	0	0	0	0	0	0	0	13848	1769	61	5		5	RTTN	18	67781559	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	3563072	67781559	10295689	608	124618											
NFIC	4782	broad.mit.edu	37	chr19	3434378	3434382	+	Frame_Shift_Del	DEL	GCCCA	-	-													actggcctcagaagaacgctGcccagcacctcctccagtgg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3434382	-	-	3434378	7	5	144	1	0	1	0	1	0	0	0	0	10467	1306	46	0	838	0	NFIC	19	3434378	Frame_Shift_Del	DEL	GCCCA	TCGA-49-6742-01A-11D-1855-08		3434378	55694605	609	124619											
SAFB	6294	broad.mit.edu	37	chr19	5651059	5651059	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accagagctacagatttgaaGaatcttttcagcaaatatgg	8	7	2	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5651059	C	C	5651059	3	2	144	1	0	0	0	0	1	0	0	0	13917	933	33	4	1303	4	SAFB	19	5651059	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	2216681	5651059	53477924	610	124620											
DNMT1	1786	broad.mit.edu	37	chr19	10287991	10287991	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgcaaaatgagatgtgatGgtggtttgcctggtgctttt	13	4	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10287991	A	A	10287991	2	1	144	1	0	0	0	0	0	0	0	1	4715	1335	47	4		4	DNMT1	19	10287991	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	4636932	10287991	48840992	611	124621											
KEAP1	9817	broad.mit.edu	37	chr19	10602775	10602775	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggcagcgcacggcccgcAgcagcgcctggacgtagaac	15	14	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10602775	G	G	10602775	3	3	144	1	0	0	0	0	1	0	0	0	8211	188	7	5	1087	5	KEAP1	19	10602775	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	314784	10602775	48526208	612	124622											
SMARCA4	6597	broad.mit.edu	37	chr19	11106948	11106948	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggacaagcgcctggcCtacctcttgcagcagacaga	11	12	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11106948	A	A	11106948	2	1	144	1	0	0	0	0	0	0	0	1	14884	668	24	2		2	SMARCA4	19	11106948	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	504173	11106948	48022035	613	124623											
SMARCA4	6597	broad.mit.edu	37	chr19	11168983	11168983	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagctgccctcgcgaaagGagctgcccgagtactacgag	12	14	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11168983	T	T	11168983	4	4	144	1	0	0	0	0	0	1	0	0	14884	1175	41	3	4704	3	SMARCA4	19	11168983	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	62035	11168983	47960000	614	124624											
EPHX3	79852	broad.mit.edu	37	chr19	15338931	15338931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggtgggagggttgggGgagagatataaggcctgctc	20	5	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15338931	T	T	15338931	1	4	144	0	1	0	0	0	0	0	0	0	5223	1247	43	2		2	EPHX3	19	15338931	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4169948	15338931	43790052	615	124625											
C19orf62	29086	broad.mit.edu	37	chr19	17385048	17385048	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctgtctccttctgtcatCcttggggcccaggaaagtct	12	12	4	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17385048	T	T	17385048	1	4	144	0	1	0	0	0	0	0	0	0	1963	870	30	4		4	C19orf62	19	17385048	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2046117	17385048	41743935	616	124626											
ELL	8178	broad.mit.edu	37	chr19	18632882	18632882	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcttgcgaccatctctcCcccgcgcccccttcccggct	6	23	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18632882	A	A	18632882	1	1	144	0	1	0	0	0	0	0	0	0	5104	638	22	2		2	ELL	19	18632882	5'UTR	SNP	C	TCGA-49-6742-01A-11D-1855-08	1247834	18632882	40496101	617	124627											
ZNF98	148198	broad.mit.edu	37	chr19	22574557	22574557	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttaaaagctttgccacattCttcacatttgtagggcttct	7	9	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22574557	G	G	22574557	3	3	144	1	0	0	0	0	1	0	0	0	18332	922	32	4	242	4	ZNF98	19	22574557	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	3941675	22574557	36554426	618	124628											
ZNF569	148266	broad.mit.edu	37	chr19	37918746	37918746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcatttggtgaggaagtGggactgaggagaaagcatga	16	3	0	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37918746	T	T	37918746	1	4	144	0	1	0	0	0	0	0	0	0	18127	1363	47	2		2	ZNF569	19	37918746	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	15344189	37918746	21210237	619	124629											
RYR1	6261	broad.mit.edu	37	chr19	38995292	38995292	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attcaggtttggggttcaggGaggagggctgatgattgcag	18	4	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38995292	A	A	38995292	1	1	144	0	1	0	0	0	0	0	0	0	13879	1189	41	4		4	RYR1	19	38995292	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1076546	38995292	20133691	620	124630											
C19orf47	126526	broad.mit.edu	37	chr19	40832426	40832426	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaggggtatcagcactctCtgagacagaacgttctccca	10	12	3	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40832426	G	G	40832426	1	3	144	0	1	0	0	0	0	0	0	0	1949	928	32	4		4	C19orf47	19	40832426	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1837134	40832426	18296557	621	124631											
CYP2A7	1549	broad.mit.edu	37	chr19	41383726	41383726	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaattttgagggtctgggGccctccacttccgtccccct	12	14	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41383726	A	A	41383726	1	1	144	0	1	0	0	0	0	0	0	0	4196	1218	42	4		4	CYP2A7	19	41383726	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	551300	41383726	17745257	622	124632											
PSG7	5676	broad.mit.edu	37	chr19	43430044	43430044	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatagaaagcttttgtcctGatagctgaaacttcccatta	8	8	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43430044	C	C	43430044	4	2	144	1	0	0	0	0	0	1	0	0	12766	1294	45	4	143	4	PSG7	19	43430044	Nonsense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	2046318	43430044	15698939	623	124633											
IRGC	56269	broad.mit.edu	37	chr19	44223520	44223520	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagagcaagtcctcaagacCgccctggtgttgggcgtcat	12	12	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44223520	T	T	44223520	2	4	144	1	0	0	0	0	0	0	0	1	7908	639	23	4		4	IRGC	19	44223520	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	793476	44223520	14905463	624	124634											
ZNF283	284349	broad.mit.edu	37	chr19	44351997	44351997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggaaggcttttaattgcgGatcaagtcttattcaacatg	10	6	3	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44351997	T	T	44351997	3	4	144	1	0	0	0	0	1	0	0	0	17946	1174	41	3	1258	3	ZNF283	19	44351997	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	128477	44351997	14776986	625	124635											
SFRS16	11129	broad.mit.edu	37	chr19	45567459	45567459	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccccagcctggcggcccCgccccgggacgtaatgccag	12	20	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45567459	T	T	45567459	2	4	144	1	0	0	0	0	0	0	0	1	14285	639	23	4		4	SFRS16	19	45567459	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1215462	45567459	13561524	626	124636											
SYMPK	8189	broad.mit.edu	37	chr19	46319126	46319126	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taccttgggtagggggccctCgagactagagtccaacagcg	14	11	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46319126	G	G	46319126	3	3	144	1	0	0	0	0	1	0	0	0	15558	893	31	4	162	4	SYMPK	19	46319126	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	751667	46319126	12809857	627	124637											
IGFL4	444882	broad.mit.edu	37	chr19	46543912	46543912	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtctctgagcttctctGgttgctgttaacagctcaga	10	9	3	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46543912	A	A	46543912	1	1	144	0	1	0	0	0	0	0	0	0	7659	1363	47	4		4	IGFL4	19	46543912	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	224786	46543912	12585071	628	124638											
IGFL2	147920	broad.mit.edu	37	chr19	46663876	46663876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccatctgtccagctcccGctggctcagaaccatggctg	10	15	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46663876	T	T	46663876	3	4	144	1	0	0	0	0	1	0	0	0	7657	1087	38	3	145	3	IGFL2	19	46663876	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	119964	46663876	12465107	629	124639											
PNMAL1	55228	broad.mit.edu	37	chr19	46974056	46974056	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattcacgggggatggtgctCagattcacaccttcaccaac	9	12	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46974056	G	G	46974056	2	3	144	1	0	0	0	0	0	0	0	1	12252	813	29	4		4	PNMAL1	19	46974056	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	310180	46974056	12154927	630	124640											
GLTSCR2	29997	broad.mit.edu	37	chr19	48255844	48255844	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgccggagcttcctacaatCcatcctttgaagaccaccag	7	15	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48255844	G	G	48255844	3	3	144	1	0	0	0	0	1	0	0	0	6539	855	30	4	767	4	GLTSCR2	19	48255844	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1281788	48255844	10873139	631	124641											
SLC6A16	28968	broad.mit.edu	37	chr19	49812334	49812334	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttagacaaaacttgacccCctgctagagaccacacactc	6	14	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49812334	A	A	49812334	3	1	144	1	0	0	0	0	1	0	0	0	14793	623	22	2	1206	2	SLC6A16	19	49812334	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1556490	49812334	9316649	632	124642											
VRK3	51231	broad.mit.edu	37	chr19	50512443	50512443	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaagatcatcagatgaCctaactttgctccacttaag	5	12	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50512443	T	T	50512443	1	4	144	0	1	0	0	0	0	0	0	0	17348	522	18	4		4	VRK3	19	50512443	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	700109	50512443	8616540	633	124643											
LILRB1	10859	broad.mit.edu	37	chr19	55147118	55147118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgccagatctaatcctGcagaacttctctgtcctcct	7	14	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55147118	T	T	55147118	1	4	144	0	1	0	0	0	0	0	0	0	8862	1334	46	3		3	LILRB1	19	55147118	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	4634675	55147118	3981865	634	124644											
MAVS	57506	broad.mit.edu	37	chr20	3838387	3838387	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggagtacttcattgcgGcactgaggggctgtgagcta	17	7	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3838387	A	A	3838387	3	1	144	1	0	0	0	0	1	0	0	0	9430	1203	42	4	229	4	MAVS	20	3838387	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08		3838387	59187133	635	124645											
RIN2	54453	broad.mit.edu	37	chr20	19945587	19945587	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagctggtttctgaaatctCttttccagccttttccctgg	7	12	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19945587	T	T	19945587	1	4	144	0	1	0	0	0	0	0	0	0	13483	928	32	4		4	RIN2	20	19945587	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	16107200	19945587	43079933	636	124646											
ENTPD6	955	broad.mit.edu	37	chr20	25205984	25205984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggtcacgccccagccCctttatggagtgaggggcct	12	15	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25205984	A	A	25205984	1	1	144	0	1	0	0	0	0	0	0	0	5185	638	22	2		2	ENTPD6	20	25205984	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	5260397	25205984	37819536	637	124647											
DEFB123	245936	broad.mit.edu	37	chr20	30028441	30028443	+	5'UTR	DEL	CTT	-	-													gccacaggccaggcactctcCttctcccattagctcagccg							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30028443	-	-	30028441	6	5	144	0	1	1	0	1	0	0	0	0	4448	696	24	0		0	DEFB123	20	30028441	5'UTR	DEL	CTT	TCGA-49-6742-01A-11D-1855-08	4822457	30028441	32997079	638	124648											
CBFA2T2	9139	broad.mit.edu	37	chr20	32224562	32224562	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acatactcactaatttgtggGagcagagaacagataactgg	10	7	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32224562	C	C	32224562	1	2	144	0	1	0	0	0	0	0	0	0	2723	1189	41	4		4	CBFA2T2	20	32224562	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2196121	32224562	30800958	639	124649											
NDRG3	57446	broad.mit.edu	37	chr20	35312903	35312903	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatccagaaggatatctcctGaattagaaagcactcacaat	6	9	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35312903	A	A	35312903	1	1	144	0	1	0	0	0	0	0	0	0	10348	1305	45	4		4	NDRG3	20	35312903	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	3088341	35312903	27712617	640	124650											
DHX35	60625	broad.mit.edu	37	chr20	37656900	37656900	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatggtgctggggcaggcatCcagcattgggaagggtaggg	20	6	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37656900	G	G	37656900	1	3	144	0	1	0	0	0	0	0	0	0	4548	870	30	4		4	DHX35	20	37656900	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	2343997	37656900	25368620	641	124651											
CHD6	84181	broad.mit.edu	37	chr20	40040832	40040832	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaactctctcttccccgctCagggagctgacatctaattt	8	13	4	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40040832	G	G	40040832	2	3	144	1	0	0	0	0	0	0	0	1	3360	813	29	4		4	CHD6	20	40040832	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	2383932	40040832	22984688	642	124652											
CHD6	84181	broad.mit.edu	37	chr20	40111898	40111898	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggatcaaaaaaatatcaaAggaaaggaactgtcccattg	8	6	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40111898	C	C	40111898	1	2	144	0	1	0	0	0	0	0	0	0	3360	87	3	5		5	CHD6	20	40111898	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	71066	40111898	22913622	643	124653											
STX16	8675	broad.mit.edu	37	chr20	57243142	57243142	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctggatgacagcagcgaaGaggaacatgccattgagata	12	9	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57243142	A	A	57243142	3	1	144	1	0	0	0	0	1	0	0	0	15457	943	33	4	366	4	STX16	20	57243142	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	17131244	57243142	5782378	644	124654											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31914243	31914243	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaatgattttatactctaAgtagtgggtgtcatgaacaa	9	5	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31914243	C	C	31914243	1	2	144	0	1	0	0	0	0	0	0	0	8604	87	3	5		5	KRTAP19-6	21	31914243	5'Flank	SNP	A	TCGA-49-6742-01A-11D-1855-08		31914243	16215652	645	124655											
SYNJ1	8867	broad.mit.edu	37	chr21	34030051	34030051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatcaaaaggccatttcctCcttctccaaaggacacggtc	6	14	2	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34030051	A	A	34030051	3	1	144	1	0	0	0	0	1	0	0	0	15571	854	30	3	2366	3	SYNJ1	21	34030051	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	2115808	34030051	14099844	646	124656											
ITSN1	6453	broad.mit.edu	37	chr21	35206578	35206579	+	Intron	INS	-	A	A													attataaaagatgcgcctttINSaaaaatgtttgatgtaatta							TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35206579	A	A	35206578	6	5	144	0	1	1	1	0	0	0	0	0	7996	1769	61	0		0	ITSN1	21	35206578	Intron	INS	-	TCGA-49-6742-01A-11D-1855-08	1176527	35206578	12923317	647	124657											
CBR1	873	broad.mit.edu	37	chr21	37444697	37444697	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcattcacctctctacGggattgttgcacacctttct	7	12	3	0	rs2835266	byFrequency;by1000genomes	TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37444697	T	T	37444697	1	4	144	0	1	0	0	0	0	0	0	0	2734	1131	39	1		1	CBR1	21	37444697	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2238119	37444697	10685198	648	124658											
MX2	4600	broad.mit.edu	37	chr21	42748999	42748999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggggcagagaaggacGctgctttcctcgccaaggac	16	11	0	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42748999	T	T	42748999	3	4	144	1	0	0	0	0	1	0	0	0	10092	1087	38	3	168	3	MX2	21	42748999	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	5304302	42748999	5380896	649	124659											
KRTAP10-3	386682	broad.mit.edu	37	chr21	45978613	45978613	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggccatgctggggtggggagGaggtgagctgggggagacgt	24	5	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45978613	C	C	45978613	1	2	144	0	1	0	0	0	0	0	0	0	8581	1189	41	4		4	KRTAP10-3	21	45978613	5'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	3229614	45978613	2151282	650	124660											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46011473	46011473	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacggaggaggagggtctgCagcaggaggcggtgcagcaa	19	8	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46011473	A	A	46011473	3	1	144	1	0	0	0	0	1	0	0	0	8584	710	25	3	208	3	KRTAP10-6	21	46011473	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	32860	46011473	2118422	651	124661											
ITGB2	3689	broad.mit.edu	37	chr21	46308570	46308570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagaccccgcagccggagCtctggagccggtccccgctg	15	17	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46308570	A	A	46308570	1	1	144	0	1	0	0	0	0	0	0	0	7964	812	28	3		3	ITGB2	21	46308570	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	297097	46308570	1821325	652	124662											
MCM3AP	8888	broad.mit.edu	37	chr21	47663461	47663461	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataagatcatcccatgggatCtccatgaccgaggggcctgc	11	12	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47663461	T	T	47663461	2	4	144	1	0	0	0	0	0	0	0	1	9481	912	32	4		4	MCM3AP	21	47663461	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1354891	47663461	466434	653	124663											
CLTCL1	8218	broad.mit.edu	37	chr22	19167663	19167663	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagcgtggggtcagccagaGaacctggcctggctagagga	18	9	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19167663	A	A	19167663	1	1	144	0	1	0	0	0	0	0	0	0	3599	957	33	4		4	CLTCL1	22	19167663	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08		19167663	32136903	654	124664											
PI4KA	5297	broad.mit.edu	37	chr22	21068845	21068845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaaagaatgtggcaccCatgatgcagccgagaaaaac	9	9	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21068845	A	A	21068845	1	1	144	0	1	0	0	0	0	0	0	0	11968	609	21	2		2	PI4KA	22	21068845	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1901182	21068845	30235721	655	124665											
THAP7	80764	broad.mit.edu	37	chr22	21354220	21354220	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtcctgcacatgctccttCagagtctggcgggcatctgc	11	13	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21354220	T	T	21354220	2	4	144	1	0	0	0	0	0	0	0	1	15972	813	29	4		4	THAP7	22	21354220	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	285375	21354220	29950346	656	124666											
HIC2	23119	broad.mit.edu	37	chr22	21800810	21800810	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacatctgtggcaaaatgttCacgcagcgcggcaccatgac	10	12	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21800810	T	T	21800810	2	4	144	1	0	0	0	0	0	0	0	1	7169	825	29	4		4	HIC2	22	21800810	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	446590	21800810	29503756	657	124667											
UBE2L3	7332	broad.mit.edu	37	chr22	21921998	21921998	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagccgcccggccggccgcGatgcattctggggaaggagc	16	15	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21921998	A	A	21921998	1	1	144	0	1	0	0	0	0	0	0	0	16989	1073	37	4		4	UBE2L3	22	21921998	5'UTR	SNP	G	TCGA-49-6742-01A-11D-1855-08	121188	21921998	29382568	658	124668											
BCR	613	broad.mit.edu	37	chr22	23631820	23631820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggaaggtgggccccccCgtttccgtgtacagggcacc	13	13	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23631820	A	A	23631820	1	1	144	0	1	0	0	0	0	0	0	0	1393	667	23	1		1	BCR	22	23631820	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1709822	23631820	27672746	659	124669											
UPB1	51733	broad.mit.edu	37	chr22	24911156	24911156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggcatcagtatatggccCtttgcttttcagtcaactta	8	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24911156	T	T	24911156	1	4	144	0	1	0	0	0	0	0	0	0	17128	696	24	4		4	UPB1	22	24911156	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1279336	24911156	26393410	660	124670											
SEC14L2	23541	broad.mit.edu	37	chr22	30795744	30795744	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggaggctggggcagggGcttgttctgggcaacagaat	19	7	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30795744	A	A	30795744	1	1	144	0	1	0	0	0	0	0	0	0	14095	1218	42	4		4	SEC14L2	22	30795744	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	5884588	30795744	20508822	661	124671											
PES1	23481	broad.mit.edu	37	chr22	30975751	30975751	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcacctgggtcctctccCcgctgcagagccagcagctt	10	18	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30975751	A	A	30975751	2	1	144	1	0	0	0	0	0	0	0	1	11827	610	22	2		2	PES1	22	30975751	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	180007	30975751	20328815	662	124672											
PLA2G6	8398	broad.mit.edu	37	chr22	38538946	38538946	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctggaaaagggctgggaggGaagagccagggaggggtctg	21	6	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38538946	A	A	38538946	1	1	144	0	1	0	0	0	0	0	0	0	12103	1189	41	4		4	PLA2G6	22	38538946	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	7563195	38538946	12765620	663	124673											
CACNA1I	8911	broad.mit.edu	37	chr22	39996548	39996548	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgatgacttcatctttatCttctttgccatggagatggt	8	7	4	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39996548	T	T	39996548	2	4	144	1	0	0	0	0	0	0	0	1	2572	903	32	4		4	CACNA1I	22	39996548	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	1457602	39996548	11308018	664	124674											
XPNPEP3	63929	broad.mit.edu	37	chr22	41318563	41318563	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcaagaacacctagcatgCtgctaggtttttaccctata	6	11	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41318563	T	T	41318563	1	4	144	0	1	0	0	0	0	0	0	0	17571	812	28	4		4	XPNPEP3	22	41318563	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	1322015	41318563	9986003	665	124675											
EFCAB6	64800	broad.mit.edu	37	chr22	44198656	44198656	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtgttggagatgccaagtGaagtgtgtgcatttttaata	12	3	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44198656	C	C	44198656	1	2	144	0	1	0	0	0	0	0	0	0	4979	1305	45	4		4	EFCAB6	22	44198656	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2880093	44198656	7105910	666	124676											
BRD1	23774	broad.mit.edu	37	chr22	50169463	50169463	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccccacctgtcactggcAcccccccccgcctccccacc	4	27	1	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50169463	C	C	50169463	1	2	144	0	1	0	0	0	0	0	0	0	1510	174	6	5		5	BRD1	22	50169463	Intron	SNP	A	TCGA-49-6742-01A-11D-1855-08	5970807	50169463	1135103	667	124677											
ZBED4	9889	broad.mit.edu	37	chr22	50277565	50277565	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaggatgactatggcgcGctgttctcccagtacagcag	13	10	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50277565	A	A	50277565	2	1	144	1	0	0	0	0	0	0	0	1	17646	1074	38	4		4	ZBED4	22	50277565	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	108102	50277565	1027001	668	124678											
SBF1	6305	broad.mit.edu	37	chr22	50899497	50899497	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagggccactgctggagacTggcctaaaaatggttcatac	11	10	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50899497	A	A	50899497	1	1	144	0	1	0	0	0	0	0	0	0	13970	1595	55	5		5	SBF1	22	50899497	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	621932	50899497	405069	669	124679											
CSF2RA	1438	broad.mit.edu	37	chrX	1414369	1414369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaagtgaaaccacagaccCtactgacaaccctcagcgta	8	13	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1414369	A	A	1414369	1	1	144	0	1	0	0	0	0	0	0	0	3968	696	24	2		2	CSF2RA	23	1414369	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08		1414369	153856191	670	124680											
NLGN4X	57502	broad.mit.edu	37	chrX	5821683	5821683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtctgggatgacgtcgcCgtcgatcaccggcccgaagg	15	13	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5821683	A	A	5821683	3	1	144	1	0	0	0	0	1	0	0	0	10559	652	23	1	1422	1	NLGN4X	23	5821683	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	4407314	5821683	149448877	671	124681											
ACOT9	23597	broad.mit.edu	37	chrX	23751337	23751337	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccgcaacttatctcgaactGaaacaaaaataaagaggtca	6	10	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23751337	A	A	23751337	1	1	144	0	1	0	0	0	0	0	0	0	157	1305	45	4		4	ACOT9	23	23751337	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	17929654	23751337	131519223	672	124682											
GK	2710	broad.mit.edu	37	chrX	30739036	30739036	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaggggctgcagaaggagtCggcgtatggagtctcgaacc	17	9	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30739036	T	T	30739036	2	4	144	1	0	0	0	0	0	0	0	1	6484	871	31	4		4	GK	23	30739036	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	6987699	30739036	124531524	673	124683											
RBM10	8241	broad.mit.edu	37	chrX	47006900	47006900	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catggagtatgaaagacggtGagttatctgttctcagcttc	11	7	2	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47006900	T	T	47006900	1	4	144	0	1	0	0	0	0	0	0	0	13219	1305	45	3		3	RBM10	23	47006900	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	16267864	47006900	108263660	674	124684											
SLC38A5	92745	broad.mit.edu	37	chrX	48326354	48326354	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggggatcagagatggaacGagcatgcttcaaagtgaggg	18	5	2	2	rs113935040		TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48326354	A	A	48326354	1	1	144	0	1	0	0	0	0	0	0	0	14721	1073	37	4		4	SLC38A5	23	48326354	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	1319454	48326354	106944206	675	124685											
WDR45	11152	broad.mit.edu	37	chrX	48933522	48933522	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccttgtccactggacggctCaccacaagttgcagactccc	8	17	1	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48933522	G	G	48933522	1	3	144	0	1	0	0	0	0	0	0	0	17424	841	29	4		4	WDR45	23	48933522	Intron	SNP	C	TCGA-49-6742-01A-11D-1855-08	607168	48933522	106337038	676	124686											
CCNB3	85417	broad.mit.edu	37	chrX	50053789	50053789	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattgagcaggaggccctcTttaagcgacactcagctttg	11	11	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50053789	G	G	50053789	3	3	144	1	0	0	0	0	1	0	0	0	2944	1609	56	5	2634	5	CCNB3	23	50053789	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	1120267	50053789	105216771	677	124687											
KDM5C	8242	broad.mit.edu	37	chrX	53223699	53223699	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggattgggcctcggagagctGaggaggcgaggcactgacac	18	9	0	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53223699	C	C	53223699	2	2	144	1	0	0	0	0	0	0	0	1	8205	1277	45	4		4	KDM5C	23	53223699	Silent	SNP	G	TCGA-49-6742-01A-11D-1855-08	3169910	53223699	102046861	678	124688											
TRO	7216	broad.mit.edu	37	chrX	54949381	54949381	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgctcagcctaagaaagCcaacaagatgaagagagtta	9	9	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54949381	T	T	54949381	3	4	144	1	0	0	0	0	1	0	0	0	16699	739	26	4	422	4	TRO	23	54949381	Missense_Mutation	SNP	C	TCGA-49-6742-01A-11D-1855-08	1725682	54949381	100321179	679	124689											
ZC3H12B	340554	broad.mit.edu	37	chrX	64718935	64718935	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgtcttcacaccatccCgaagagtccaaggcaggagg	10	12	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64718935	A	A	64718935	2	1	144	1	0	0	0	0	0	0	0	1	17688	644	23	1		1	ZC3H12B	23	64718935	Silent	SNP	C	TCGA-49-6742-01A-11D-1855-08	9769554	64718935	90551625	680	124690											
AR	367	broad.mit.edu	37	chrX	66863122	66863122	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagactgccagggaccatgtTttgcccattgactattactt	9	10	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66863122	G	G	66863122	2	3	144	1	0	0	0	0	0	0	0	1	838	1828	64	5		5	AR	23	66863122	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	2144187	66863122	88407438	681	124691											
MAGT1	84061	broad.mit.edu	37	chrX	77130816	77130816	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatagacatcctgagtaagGtatacacattatttaagtac	6	8	0	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77130816	C	C	77130816	1	2	144	0	1	0	0	0	0	0	0	0	9288	1276	44	4		4	MAGT1	23	77130816	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	10267694	77130816	78139744	682	124692											
PCDH11X	27328	broad.mit.edu	37	chrX	91675613	91675613	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttctttcatcattttaaGataccatctcactattttct	2	10	5	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91675613	T	T	91675613	1	4	144	0	1	0	0	0	0	0	0	0	11602	957	33	3		3	PCDH11X	23	91675613	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	14544797	91675613	63594947	683	124693											
COL4A5	1287	broad.mit.edu	37	chrX	107782953	107782953	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttcatatttaatgattttTtccctctttctcttccttat	3	9	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107782953	G	G	107782953	1	3	144	0	1	0	0	0	0	0	0	0	3726	1856	64	5		5	COL4A5	23	107782953	Intron	SNP	T	TCGA-49-6742-01A-11D-1855-08	16107340	107782953	47487607	684	124694											
COL4A5	1287	broad.mit.edu	37	chrX	107840675	107840675	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacctggtgatatcctcacTtttccaggaatgaagggtga	11	8	1	3			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107840675	G	G	107840675	2	3	144	1	0	0	0	0	0	0	0	1	3726	1596	56	5		5	COL4A5	23	107840675	Silent	SNP	T	TCGA-49-6742-01A-11D-1855-08	57722	107840675	47429885	685	124695											
TFDP3	51270	broad.mit.edu	37	chrX	132351956	132351956	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttcatggaaagacggcacAggcccatgccattcttctct	8	14	3	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132351956	T	T	132351956	3	4	144	1	0	0	0	0	1	0	0	0	15922	188	7	5	889	5	TFDP3	23	132351956	Missense_Mutation	SNP	A	TCGA-49-6742-01A-11D-1855-08	24511281	132351956	22918604	686	124696											
GPC3	2719	broad.mit.edu	37	chrX	133087112	133087112	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattctgaataattaagaacTtgagctccatacttgcagac	6	9	1	4			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133087112	C	C	133087112	3	2	144	1	0	0	0	0	1	0	0	0	6664	1609	56	5	1541	5	GPC3	23	133087112	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	735156	133087112	22183448	687	124697											
ARHGEF6	9459	broad.mit.edu	37	chrX	135758848	135758848	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttttatgaagaaatttcTtcatcgttttagggctttta	6	6	2	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135758848	C	C	135758848	3	2	144	1	0	0	0	0	1	0	0	0	912	1609	56	5	470	5	ARHGEF6	23	135758848	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	2671736	135758848	19511712	688	124698											
ATP11C	286410	broad.mit.edu	37	chrX	138857035	138857035	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggatttagctgtctccatcTtgtccccagtgagcacccag	9	13	2	1			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138857035	G	G	138857035	3	3	144	1	0	0	0	0	1	0	0	0	1125	1609	56	5	1470	5	ATP11C	23	138857035	Missense_Mutation	SNP	T	TCGA-49-6742-01A-11D-1855-08	3098187	138857035	16413525	689	124699											
CNGA2	1260	broad.mit.edu	37	chrX	150911915	150911915	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtttacccaaacatcactGaccctgagtatggctacctg	9	12	1	2			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150911915	A	A	150911915	3	1	144	1	0	0	0	0	1	0	0	0	3629	1290	45	4	962	4	CNGA2	23	150911915	Missense_Mutation	SNP	G	TCGA-49-6742-01A-11D-1855-08	12054880	150911915	4358645	690	124700											
PLXNA3	55558	broad.mit.edu	37	chrX	153699711	153699711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggacctgcccctccctGggctgcctgtgcgaggcagg	16	15	0	0			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153699711	T	T	153699711	1	4	144	0	1	0	0	0	0	0	0	0	12216	1363	47	2		2	PLXNA3	23	153699711	Intron	SNP	G	TCGA-49-6742-01A-11D-1855-08	2787796	153699711	1570849	691	124701											
AGRN	375790	broad.mit.edu	37	chr1	970664	970664	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttcttccagataaaccCgggacccacttcactccagt	6	14	2	1	rs148157593		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	970664	A	A	970664	2	1	145	1	0	0	0	0	0	0	0	1	397	639	23	1		1	AGRN	1	970664	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08		970664	248279957	1	124702											
ACAP3	116983	broad.mit.edu	37	chr1	1231130	1231130	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccacctgaggacagagcgGccacacagggcagaacgggc	14	14	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1231130	A	A	1231130	3	1	145	1	0	0	0	0	1	0	0	0	120	1203	42	4	841	4	ACAP3	1	1231130	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	260466	1231130	248019491	2	124703											
MRPL20	55052	broad.mit.edu	37	chr1	1342158	1342158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggcgacataatttgtcGgagtttcgaagcaaggtatg	15	6	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1342158	T	T	1342158	1	4	145	0	1	0	0	0	0	0	0	0	9880	1131	39	1		1	MRPL20	1	1342158	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	111028	1342158	247908463	3	124704											
PRKCZ	5590	broad.mit.edu	37	chr1	2082425	2082425	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgatgacgaggtaggtgCcgcttctcatggggcccggg	17	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2082425	T	T	2082425	1	4	145	0	1	0	0	0	0	0	0	0	12623	754	26	4		4	PRKCZ	1	2082425	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	740267	2082425	247168196	4	124705											
NPHP4	261734	broad.mit.edu	37	chr1	5993291	5993291	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcccaccctgcagaggcagGgtcacccttccagaatcagc	9	16	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5993291	A	A	5993291	2	1	145	1	0	0	0	0	0	0	0	1	10676	1219	43	4		4	NPHP4	1	5993291	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	3910866	5993291	243257330	5	124706											
CHD5	26038	broad.mit.edu	37	chr1	6169754	6169754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgggctgacatctgtcCccagcccctaccccatcagt	7	19	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6169754	A	A	6169754	1	1	145	0	1	0	0	0	0	0	0	0	3359	638	22	2		2	CHD5	1	6169754	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	176463	6169754	243080867	6	124707											
PLEKHG5	57449	broad.mit.edu	37	chr1	6528571	6528571	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagctgaaaggaccgctgtcGaactcgggggaggacagcgt	17	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6528571	A	A	6528571	2	1	145	1	0	0	0	0	0	0	0	1	12168	1049	37	4		4	PLEKHG5	1	6528571	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	358817	6528571	242722050	7	124708											
NOL9	79707	broad.mit.edu	37	chr1	6585875	6585875	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggcttgagacaaagctttCtggtaggaaagtttcttccc	10	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6585875	T	T	6585875	1	4	145	0	1	0	0	0	0	0	0	0	10623	928	32	4		4	NOL9	1	6585875	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	57304	6585875	242664746	8	124709											
TNFRSF9	3604	broad.mit.edu	37	chr1	7995187	7995187	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccattcacaagcacagactTtccatccaaagaacagctta	4	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7995187	A	A	7995187	4	1	145	1	0	0	0	0	0	1	0	0	16423	1850	64	5	349	5	TNFRSF9	1	7995187	Nonsense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1409312	7995187	241255434	9	124710											
RERE	473	broad.mit.edu	37	chr1	8505712	8505712	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agacagatagacaatcgtctCcatcagcaaccacctgcggc	8	14	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8505712	G	G	8505712	1	3	145	0	1	0	0	0	0	0	0	0	13339	870	30	4		4	RERE	1	8505712	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	510525	8505712	240744909	10	124711											
KIF1B	23095	broad.mit.edu	37	chr1	10421944	10421944	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtacaacagaatcattagtCcttaagtattctcggcttac	6	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10421944	T	T	10421944	1	4	145	0	1	0	0	0	0	0	0	0	8354	870	30	4		4	KIF1B	1	10421944	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1916232	10421944	238828677	11	124712											
CASZ1	54897	broad.mit.edu	37	chr1	10702940	10702940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcggtgctctcgttacccaCgggggtgctggagcagctcc	15	14	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10702940	A	A	10702940	3	1	145	1	0	0	0	0	1	0	0	0	2711	536	19	3	1149	3	CASZ1	1	10702940	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	280996	10702940	238547681	12	124713											
MTOR	2475	broad.mit.edu	37	chr1	11174929	11174929	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcttctctggaaacttctCtcgggtcatagcaacctaca	6	12	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11174929	T	T	11174929	3	4	145	1	0	0	0	0	1	0	0	0	10048	922	32	4	572	4	MTOR	1	11174929	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	471989	11174929	238075692	13	124714											
PTCHD2	57540	broad.mit.edu	37	chr1	11589785	11589786	+	Intron	DNP	CC	AA	AA													ggggacctcaagagctgagaCctcggggctcaggagctgga							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11589786	AA	AA	11589785	1	1	145	0	1	0	0	0	0	0	0	0	12839	522	18	3		3	PTCHD2	1	11589785	Intron	DNP	CC	TCGA-49-6743-01A-11D-1855-08	414856	11589785	237660836	14	124715											
FBXO44	93611	broad.mit.edu	37	chr1	11718337	11718337	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatcagaggggttcgagttCtggagcctggatgtgaatgg	16	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11718337	T	T	11718337	2	4	145	1	0	0	0	0	0	0	0	1	5810	912	32	4		4	FBXO44	1	11718337	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	128552	11718337	237532284	15	124716											
VPS13D	55187	broad.mit.edu	37	chr1	12342995	12342995	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattgtcagtgaaggaagtCaaatcctttactcagattca	7	8	5	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12342995	T	T	12342995	2	4	145	1	0	0	0	0	0	0	0	1	17319	813	29	4		4	VPS13D	1	12342995	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	624658	12342995	236907626	16	124717											
AADACL3	126767	broad.mit.edu	37	chr1	12785651	12785651	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttaccaactgaagccccaTgagcccatgaatgaagctgc	10	12	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12785651	A	A	12785651	3	1	145	1	0	0	0	0	1	0	0	0	12	1461	51	5	759	5	AADACL3	1	12785651	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	442656	12785651	236464970	17	124718											
LOC649330	649330	broad.mit.edu	37	chr1	12907644	12907644	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagacttggaagatccccGctttccactcttagaattga	7	12	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12907644	T	T	12907644	2	4	145	1	0	0	0	0	0	0	0	1	8969	1086	38	3		3	LOC649330	1	12907644	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	121993	12907644	236342977	18	124719											
PRAMEF10	343071	broad.mit.edu	37	chr1	12952861	12952861	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttccctgagtgtacgcatCagctcagcccgaattggggt	11	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12952861	A	A	12952861	2	1	145	1	0	0	0	0	0	0	0	1	12527	813	29	3		3	PRAMEF10	1	12952861	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	45217	12952861	236297760	19	124720											
TMEM51	55092	broad.mit.edu	37	chr1	15545961	15545961	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcatctctctcccgtcctatGagtcactgacggggctcgac	10	15	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15545961	A	A	15545961	3	1	145	1	0	0	0	0	1	0	0	0	16300	1291	45	4	490	4	TMEM51	1	15545961	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2593100	15545961	233704660	20	124721											
CASP9	842	broad.mit.edu	37	chr1	15819544	15819544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcgacctgtaagacatgaCcatggagagctctgtgagtt	12	8	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15819544	A	A	15819544	1	1	145	0	1	0	0	0	0	0	0	0	2705	522	18	3		3	CASP9	1	15819544	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	273583	15819544	233431077	21	124722											
SPEN	23013	broad.mit.edu	37	chr1	16200955	16200955	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtcaaactctctttttttCcccactaactctagaagtat	3	11	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16200955	T	T	16200955	1	4	145	0	1	0	0	0	0	0	0	0	15156	870	30	4		4	SPEN	1	16200955	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	381411	16200955	233049666	22	124723											
KIAA0090	23065	broad.mit.edu	37	chr1	19566829	19566829	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caactcccattccgtctccaGagccaaagtttggagggaac	9	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19566829	C	C	19566829	3	2	145	1	0	0	0	0	1	0	0	0	8223	933	33	4	2301	4	KIAA0090	1	19566829	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3365874	19566829	229683792	23	124724											
NBL1	4681	broad.mit.edu	37	chr1	19981647	19981647	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgaagccaagaacatcaccCagatcgtgggccacagcggc	12	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19981647	G	G	19981647	3	3	145	1	0	0	0	0	1	0	0	0	10284	595	21	4	235	4	NBL1	1	19981647	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	414818	19981647	229268974	24	124725											
RAP1GAP	5909	broad.mit.edu	37	chr1	21940106	21940106	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagcccgggaagctcagcgGagcggagacctcacctttgc	13	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21940106	A	A	21940106	1	1	145	0	1	0	0	0	0	0	0	0	13145	1189	41	4		4	RAP1GAP	1	21940106	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1958459	21940106	227310515	25	124726											
HSPG2	3339	broad.mit.edu	37	chr1	22174305	22174305	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accgtgggggaagacgactcGatcctgatcggtggggagac	17	9	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22174305	A	A	22174305	2	1	145	1	0	0	0	0	0	0	0	1	7500	1048	37	4		4	HSPG2	1	22174305	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	234199	22174305	227076316	26	124727											
TCEA3	6920	broad.mit.edu	37	chr1	23744405	23744405	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctctcacctagcagcCgcttccagtttttgataagg	8	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23744405	T	T	23744405	3	4	145	1	0	0	0	0	1	0	0	0	15791	652	23	4	852	4	TCEA3	1	23744405	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1570100	23744405	225506216	27	124728											
SYF2	25949	broad.mit.edu	37	chr1	25555338	25555338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagttaaataaactcaCccaacgtgttgcagttggta	9	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25555338	A	A	25555338	1	1	145	0	1	0	0	0	0	0	0	0	15556	522	18	3		3	SYF2	1	25555338	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1810933	25555338	223695283	28	124729											
PUM1	9698	broad.mit.edu	37	chr1	31453016	31453016	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcgggagctaaacctgctGaaaacatacctgtcagtaaa	9	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31453016	A	A	31453016	1	1	145	0	1	0	0	0	0	0	0	0	12933	1305	45	4		4	PUM1	1	31453016	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	5897678	31453016	217797605	29	124730											
PUM1	9698	broad.mit.edu	37	chr1	31501649	31501649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagttcacttacctctccCatcgctcttccctccagagc	4	19	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31501649	A	A	31501649	3	1	145	1	0	0	0	0	1	0	0	0	12933	594	21	2	3220	2	PUM1	1	31501649	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	48633	31501649	217748972	30	124731											
EIF3I	8668	broad.mit.edu	37	chr1	32690093	32690093	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggtaagctgggttcattCacctttttagcaaatattga	8	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32690093	T	T	32690093	1	4	145	0	1	0	0	0	0	0	0	0	5061	841	29	4		4	EIF3I	1	32690093	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1188444	32690093	216560528	31	124732											
EIF3I	8668	broad.mit.edu	37	chr1	32694025	32694025	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtctcagctttcatttGggtgcttgggtttctgggga	14	7	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32694025	C	C	32694025	1	2	145	0	1	0	0	0	0	0	0	0	5061	1363	47	4		4	EIF3I	1	32694025	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3932	32694025	216556596	32	124733											
ZMYM4	9202	broad.mit.edu	37	chr1	35862117	35862117	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaaagcatttctaaccctCtttgctttttgtgattttgt	6	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35862117	T	T	35862117	1	4	145	0	1	0	0	0	0	0	0	0	17828	928	32	4		4	ZMYM4	1	35862117	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3168092	35862117	213388504	33	124734											
GRIK3	2899	broad.mit.edu	37	chr1	37346220	37346220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttgcccccagcctagccaGgcctggccacccacctgtac	9	20	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37346220	T	T	37346220	1	4	145	0	1	0	0	0	0	0	0	0	6841	1015	35	2		2	GRIK3	1	37346220	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1484103	37346220	211904401	34	124735											
EPHA10	284656	broad.mit.edu	37	chr1	38188793	38188793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagcctgcagcaggtccCcacagctctgggggtccagg	14	15	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38188793	A	A	38188793	3	1	145	1	0	0	0	0	1	0	0	0	5208	623	22	2	1178	2	EPHA10	1	38188793	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	842573	38188793	211061828	35	124736											
MACF1	23499	broad.mit.edu	37	chr1	39696958	39696958	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccccagcacctctcactGctctcatctggatctgtcat	6	17	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39696958	A	A	39696958	1	1	145	0	1	0	0	0	0	0	0	0	9232	1334	46	4		4	MACF1	1	39696958	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1508165	39696958	209553663	36	124737											
COL9A2	1298	broad.mit.edu	37	chr1	40777505	40777505	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttcccggtcactttgtgaGatccaccatcttgggagatg	10	11	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40777505	A	A	40777505	1	1	145	0	1	0	0	0	0	0	0	0	3740	957	33	4		4	COL9A2	1	40777505	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1080547	40777505	208473116	37	124738											
KCNQ4	9132	broad.mit.edu	37	chr1	41289899	41289899	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgttgccacctgccaccggCcgggcagcacctccttctgc	10	20	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41289899	T	T	41289899	3	4	145	1	0	0	0	0	1	0	0	0	8155	739	26	4	1295	4	KCNQ4	1	41289899	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	512394	41289899	207960722	38	124739											
CTPS	1503	broad.mit.edu	37	chr1	41462928	41462928	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccgcctcagcctttcaaAgtgctgggattataggatta	9	12	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41462928	G	G	41462928	1	3	145	0	1	0	0	0	0	0	0	0	4056	87	3	5		5	CTPS	1	41462928	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	173029	41462928	207787693	39	124740											
PPIH	10465	broad.mit.edu	37	chr1	43131649	43131649	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtatatttggtttccatcAggcgaacagtggtccaagta	11	7	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43131649	T	T	43131649	5	4	145	1	0	0	0	0	0	0	1	0	12426	202	7	5	361	5	PPIH	1	43131649	Splice_Site	SNP	A	TCGA-49-6743-01A-11D-1855-08	1668721	43131649	206118972	40	124741											
PTPRF	5792	broad.mit.edu	37	chr1	44087746	44087746	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctcctctgagccatacCgaccatcgtccagccctcct	6	20	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44087746	T	T	44087746	1	4	145	0	1	0	0	0	0	0	0	0	12909	667	23	4		4	PTPRF	1	44087746	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	956097	44087746	205162875	41	124742											
IPO13	9670	broad.mit.edu	37	chr1	44424293	44424293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagctctgggggccagggaGcggtactgagatgctgtggc	19	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44424293	T	T	44424293	1	4	145	0	1	0	0	0	0	0	0	0	7864	986	34	3		3	IPO13	1	44424293	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	336547	44424293	204826328	42	124743											
KIF2C	11004	broad.mit.edu	37	chr1	45223725	45223725	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttctctccctcagcccgGgacgtcttcctcctgaagaa	8	15	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45223725	T	T	45223725	2	4	145	1	0	0	0	0	0	0	0	1	8369	1219	43	2		2	KIF2C	1	45223725	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	799432	45223725	204026896	43	124744											
KIF2C	11004	broad.mit.edu	37	chr1	45228015	45228015	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgagacctccttgtttcctCagggtcaaggagctgagccc	11	13	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45228015	G	G	45228015	1	3	145	0	1	0	0	0	0	0	0	0	8369	841	29	4		4	KIF2C	1	45228015	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4290	45228015	204022606	44	124745											
MAST2	23139	broad.mit.edu	37	chr1	46487486	46487486	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgaatcatgttgtttctGaatattcaggggtgggagtg	13	6	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46487486	A	A	46487486	1	1	145	0	1	0	0	0	0	0	0	0	9417	1305	45	4		4	MAST2	1	46487486	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1259471	46487486	202763135	45	124746											
RAD54L	8438	broad.mit.edu	37	chr1	46739098	46739098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgccttggacctcttccctCctggttacagctctaaggcc	9	15	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46739098	A	A	46739098	3	1	145	1	0	0	0	0	1	0	0	0	13101	855	30	3	1497	3	RAD54L	1	46739098	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	251612	46739098	202511523	46	124747											
FAAH	2166	broad.mit.edu	37	chr1	46874019	46874019	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaggggctggcctcgctGactgcagcctcgcagctgtg	15	13	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46874019	T	T	46874019	1	4	145	0	1	0	0	0	0	0	0	0	5399	1305	45	3		3	FAAH	1	46874019	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	134921	46874019	202376602	47	124748											
AGBL4	84871	broad.mit.edu	37	chr1	50311826	50311826	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcataccaaggaaaagccCtatgggttcaataagtgtgg	10	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50311826	G	G	50311826	1	3	145	0	1	0	0	0	0	0	0	0	377	696	24	4		4	AGBL4	1	50311826	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3437807	50311826	198938795	48	124749											
EPS15	2060	broad.mit.edu	37	chr1	51871621	51871621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactctaggttgctctggcCttcaacatgttcattaaggt	9	9	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51871621	A	A	51871621	3	1	145	1	0	0	0	0	1	0	0	0	5234	681	24	2	1097	2	EPS15	1	51871621	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1559795	51871621	197379000	49	124750											
ZYG11B	79699	broad.mit.edu	37	chr1	53287252	53287252	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaacacattgtgcgccAtgggaggccacctccctgta	10	12	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53287252	G	G	53287252	3	3	145	1	0	0	0	0	1	0	0	0	18382	217	8	5	2240	5	ZYG11B	1	53287252	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1415631	53287252	195963369	50	124751											
CYB5RL	606495	broad.mit.edu	37	chr1	54661163	54661163	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaccttgccagatctcGgtgatagaggtcaaacacac	8	14	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54661163	T	T	54661163	2	4	145	1	0	0	0	0	0	0	0	1	4163	1124	39	1		1	CYB5RL	1	54661163	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1373911	54661163	194589458	51	124752											
C1orf177	163747	broad.mit.edu	37	chr1	55277463	55277463	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcccccacccccgccccAcagaactactatccaggccc	5	23	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55277463	C	C	55277463	1	2	145	0	1	0	0	0	0	0	0	0	2037	174	6	5		5	C1orf177	1	55277463	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	616300	55277463	193973158	52	124753											
DAB1	1600	broad.mit.edu	37	chr1	57499077	57499077	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accttcgttgcctcaaaaatCtcatcaaagtctgtgggcag	8	11	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57499077	G	G	57499077	1	3	145	0	1	0	0	0	0	0	0	0	4250	928	32	4		4	DAB1	1	57499077	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2221614	57499077	191751544	53	124754											
INADL	10207	broad.mit.edu	37	chr1	62257095	62257096	+	Missense_Mutation	DNP	GG	TT	TT													gtcttggaattagaattgttGgctatgttggaacatctcat							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	62257096	TT	TT	62257095	3	4	145	1	0	0	0	0	1	0	0	0	7801	1348	47	2	1174	2	INADL	1	62257095	Missense_Mutation	DNP	GG	TCGA-49-6743-01A-11D-1855-08	4758018	62257095	186993526	54	124755											
FOXD3	27022	broad.mit.edu	37	chr1	63789535	63789535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcggcggccggcgccgcggGaccctacggccgcccctacg	17	19	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63789535	T	T	63789535	3	4	145	1	0	0	0	0	1	0	0	0	6056	1174	41	3	808	3	FOXD3	1	63789535	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1532440	63789535	185461086	55	124756											
SGIP1	84251	broad.mit.edu	37	chr1	67148111	67148111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggccatggctgctgcagtGtgagcaacaccgtcctcctg	12	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67148111	A	A	67148111	1	1	145	0	1	0	0	0	0	0	0	0	14319	1392	48	4		4	SGIP1	1	67148111	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3358576	67148111	182102510	56	124757											
IL12RB2	3595	broad.mit.edu	37	chr1	67833639	67833639	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggagagagctccatccaGggggtgacacacaggtccct	13	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67833639	A	A	67833639	3	1	145	1	0	0	0	0	1	0	0	0	7697	1000	35	4	1424	4	IL12RB2	1	67833639	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	685528	67833639	181416982	57	124758											
RPE65	6121	broad.mit.edu	37	chr1	68895585	68895585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttttgtcctgctcctggGctcaccaccacactcagaac	8	16	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68895585	T	T	68895585	3	4	145	1	0	0	0	0	1	0	0	0	13656	1194	42	3	129	3	RPE65	1	68895585	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1061946	68895585	180355036	58	124759											
ANKRD13C	81573	broad.mit.edu	37	chr1	70820143	70820143	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggctcaccgctggcgacgGagctggcgctgcggcggcac	18	14	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70820143	C	C	70820143	1	2	145	0	1	0	0	0	0	0	0	0	643	1189	41	4		4	ANKRD13C	1	70820143	5'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	1924558	70820143	178430478	59	124760											
PTGER3	5733	broad.mit.edu	37	chr1	71512608	71512608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttatgcgaagagctagtcCcgttgccccctcgcccggtg	12	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71512608	A	A	71512608	3	1	145	1	0	0	0	0	1	0	0	0	12850	623	22	2	838	2	PTGER3	1	71512608	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	692465	71512608	177738013	60	124761											
TNNI3K	51086	broad.mit.edu	37	chr1	74954902	74954902	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaattttctgaagttgtcatGaagttagaagagtgtctctg	11	4	3	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74954902	A	A	74954902	3	1	145	1	0	0	0	0	1	0	0	0	16452	1290	45	4	2592	4	TNNI3K	1	74954902	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3442294	74954902	174295719	61	124762											
SLC44A5	204962	broad.mit.edu	37	chr1	75685015	75685015	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttgtatacaggtacccccGatgtcgccaagaaactgaat	8	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75685015	T	T	75685015	4	4	145	1	0	0	0	0	0	1	0	0	14753	1059	37	3	1113	3	SLC44A5	1	75685015	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	730113	75685015	173565606	62	124763											
PTGFR	5737	broad.mit.edu	37	chr1	78959094	78959094	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcattgttgtgcaatgcaatCacaggaattacacttttaag	7	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78959094	A	A	78959094	2	1	145	1	0	0	0	0	0	0	0	1	12855	816	29	3		3	PTGFR	1	78959094	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	3274079	78959094	170291527	63	124764											
ELTD1	64123	broad.mit.edu	37	chr1	79401979	79401979	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagattgttaaagtcctaCcatttgaatcatatgcagct	7	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79401979	A	A	79401979	5	1	145	1	0	0	0	0	0	0	1	0	5126	521	18	3	1230	3	ELTD1	1	79401979	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	442885	79401979	169848642	64	124765											
ELTD1	64123	broad.mit.edu	37	chr1	79474729	79474729	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcatattcgtgatggagaGatagggacagattgcagaaa	14	4	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79474729	T	T	79474729	1	4	145	0	1	0	0	0	0	0	0	0	5126	957	33	3		3	ELTD1	1	79474729	5'Flank	SNP	G	TCGA-49-6743-01A-11D-1855-08	72750	79474729	169775892	65	124766											
COL24A1	255631	broad.mit.edu	37	chr1	86590639	86590639	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcatagctattttcgatGggataagtagcatcaggata	10	5	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86590639	A	A	86590639	2	1	145	1	0	0	0	0	0	0	0	1	3715	1335	47	4		4	COL24A1	1	86590639	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	7115910	86590639	162659982	66	124767											
BRDT	676	broad.mit.edu	37	chr1	92442959	92442959	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaactattaaggtaaatgtTgccttaaaaggaagaacttc	9	5	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92442959	A	A	92442959	1	1	145	0	1	0	0	0	0	0	0	0	1517	1827	63	5		5	BRDT	1	92442959	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	5852320	92442959	156807662	67	124768											
GFI1	2672	broad.mit.edu	37	chr1	92944029	92944029	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttttctttaacacagagcaGagaataactccatcagaaag	7	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92944029	C	C	92944029	1	2	145	0	1	0	0	0	0	0	0	0	6403	957	33	4		4	GFI1	1	92944029	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	501070	92944029	156306592	68	124769											
EVI5	7813	broad.mit.edu	37	chr1	93170110	93170110	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaacaaagaacatgaatAccttaacttgcttttccttc	3	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93170110	G	G	93170110	5	3	145	1	0	0	0	0	0	0	1	0	5331	405	14	5	2023	5	EVI5	1	93170110	Splice_Site	SNP	A	TCGA-49-6743-01A-11D-1855-08	226081	93170110	156080511	69	124770											
RPL5	6125	broad.mit.edu	37	chr1	93306380	93306380	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttagcctcagacactactGaggtggttctttctatccta	8	10	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93306380	A	A	93306380	1	1	145	0	1	0	0	0	0	0	0	0	13708	1305	45	4		4	RPL5	1	93306380	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	136270	93306380	155944241	70	124771											
ARHGAP29	9411	broad.mit.edu	37	chr1	94667361	94667361	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattttctagatcatttcttCtttcttcaacatttgtcaca	2	9	7	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94667361	G	G	94667361	3	3	145	1	0	0	0	0	1	0	0	0	880	913	32	4	2637	4	ARHGAP29	1	94667361	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1360981	94667361	154583260	71	124772											
LRRC39	127495	broad.mit.edu	37	chr1	100618083	100618083	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgaagttgacaaacctAgaagttcatcaaaaaacagt	6	8	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100618083	G	G	100618083	1	3	145	0	1	0	0	0	0	0	0	0	9082	435	15	5		5	LRRC39	1	100618083	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	5950722	100618083	148632538	72	124773											
COL11A1	1301	broad.mit.edu	37	chr1	103352612	103352613	+	Splice_Site	DNP	CC	AA	AA													aatgacttcaccaggtggacCctgtaaagaagataatgtga							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	103352613	AA	AA	103352612	5	1	145	1	0	0	0	0	0	0	1	0	3699	637	22	2	831	2	COL11A1	1	103352612	Splice_Site	DNP	CC	TCGA-49-6743-01A-11D-1855-08	2734529	103352612	145898009	73	124774											
NTNG1	22854	broad.mit.edu	37	chr1	107866742	107866742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatattgcttttttttttTaaaagctattaaagaggaga	6	4	0	2	rs76871213	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107866742	A	A	107866742	1	1	145	0	1	0	0	0	0	0	0	0	10799	1769	61	5		5	NTNG1	1	107866742	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4514130	107866742	141383879	74	124775											
VAV3	10451	broad.mit.edu	37	chr1	108299854	108299854	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaggcaagaataaaaaataCaaacaaattactgatgaatc	5	5	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108299854	G	G	108299854	1	3	145	0	1	0	0	0	0	0	0	0	17260	493	17	4		4	VAV3	1	108299854	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	433112	108299854	140950767	75	124776											
GSTM2	2946	broad.mit.edu	37	chr1	110215789	110215789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtgagccaccgcgcctgGcctcttcctctctttttttc	8	16	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110215789	T	T	110215789	1	4	145	0	1	0	0	0	0	0	0	0	6904	1218	42	3		3	GSTM2	1	110215789	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1915935	110215789	139034832	76	124777											
CSDE1	7812	broad.mit.edu	37	chr1	115260835	115260835	+	Frame_Shift_Del	DEL	C	-	-													atctttctttctgcaccaaaCccctgtgggggggagaaaaa							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115260835	-	-	115260835	7	5	145	1	0	1	0	1	0	0	0	0	3963	494	18	0	48	0	CSDE1	1	115260835	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	5045046	115260835	133989786	77	124778											
SYCP1	6847	broad.mit.edu	37	chr1	115418717	115418717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taacagcttttgaggaacttCgtgtgcaagctgagaattcc	10	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115418717	A	A	115418717	3	1	145	1	0	0	0	0	1	0	0	0	15550	884	31	3	719	3	SYCP1	1	115418717	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	157882	115418717	133831904	78	124779											
CASQ2	845	broad.mit.edu	37	chr1	116243727	116243727	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgctcctgacgcaaaggGagtgggaaaagagatgatgg	16	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116243727	T	T	116243727	1	4	145	0	1	0	0	0	0	0	0	0	2707	1189	41	3		3	CASQ2	1	116243727	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	825010	116243727	133006894	79	124780											
SPAG17	200162	broad.mit.edu	37	chr1	118539144	118539144	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatttgaagaaataaaaatAtaatcacttcaagtattccg	4	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118539144	G	G	118539144	1	3	145	0	1	0	0	0	0	0	0	0	15095	464	16	5		5	SPAG17	1	118539144	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2295417	118539144	130711477	80	124781											
SPAG17	200162	broad.mit.edu	37	chr1	118629688	118629688	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccgctctttagtgatactCactgctcattgctgcattcc	7	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118629688	T	T	118629688	1	4	145	0	1	0	0	0	0	0	0	0	15095	841	29	4		4	SPAG17	1	118629688	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	90544	118629688	130620933	81	124782											
NBPF7	343505	broad.mit.edu	37	chr1	120382993	120382993	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcagatatttcccacttcAcactctgcaagcacagtcag	6	13	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120382993	T	T	120382993	1	4	145	0	1	0	0	0	0	0	0	0	10293	174	6	5		5	NBPF7	1	120382993	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1753305	120382993	128867628	82	124783											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879613	144879613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagttggatgtgctgttGtggccactgcctttgagagg	14	6	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144879613	T	T	144879613	1	4	145	0	1	0	0	0	0	0	0	0	11737	1392	48	3		3	PDE4DIP	1	144879613	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	24496620	144879613	104371008	83	124784											
PDE4DIP	9659	broad.mit.edu	37	chr1	144882856	144882856	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctttcagctccgcattctCaaggcaaaggctcagcatgg	9	13	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144882856	G	G	144882856	3	3	145	1	0	0	0	0	1	0	0	0	11737	835	29	4	3961	4	PDE4DIP	1	144882856	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3243	144882856	104367765	84	124785											
HFE2	148738	broad.mit.edu	37	chr1	145416370	145416370	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcagaaggtgtatcaggctGaggtggataatcttcctgta	12	6	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145416370	C	C	145416370	3	2	145	1	0	0	0	0	1	0	0	0	7149	1291	45	4	725	4	HFE2	1	145416370	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	533514	145416370	103834251	85	124786											
POLR3C	10623	broad.mit.edu	37	chr1	145594089	145594089	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgacgttcaggagctgtGatcatctcctctatttcttg	9	10	5	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145594089	T	T	145594089	2	4	145	1	0	0	0	0	0	0	0	1	12325	1280	45	3		3	POLR3C	1	145594089	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	177719	145594089	103656532	86	124787											
NBPF14	25832	broad.mit.edu	37	chr1	148004683	148004683	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaacacacttctgtagtgCtggaatgagtcaggtagttc	10	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148004683	G	G	148004683	3	3	145	1	0	0	0	0	1	0	0	0	10289	796	28	4	138	4	NBPF14	1	148004683	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2410594	148004683	101245938	87	124788											
ANP32E	81611	broad.mit.edu	37	chr1	150204268	150204268	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggactaactctgtcacctgTaagagggaaaacattaatta	8	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150204268	A	A	150204268	1	1	145	0	1	0	0	0	0	0	0	0	709	1653	57	5		5	ANP32E	1	150204268	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2199585	150204268	99046353	88	124789											
TCHHL1	126637	broad.mit.edu	37	chr1	152059439	152059439	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttggaaacactttgctctCtggctggttcatctccttcc	7	13	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152059439	T	T	152059439	3	4	145	1	0	0	0	0	1	0	0	0	15823	913	32	4	1999	4	TCHHL1	1	152059439	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1855171	152059439	97191182	89	124790											
TCHH	7062	broad.mit.edu	37	chr1	152084937	152084937	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttcttccttccggagCactgtctcgcgcttcctcca	6	17	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152084937	A	A	152084937	2	1	145	1	0	0	0	0	0	0	0	1	15822	697	25	3		3	TCHH	1	152084937	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	25498	152084937	97165684	90	124791											
LCE3E	353145	broad.mit.edu	37	chr1	152538491	152538491	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaggagttggacctctggCgccggcatcggtggtggcgc	17	12	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152538491	G	G	152538491	3	3	145	1	0	0	0	0	1	0	0	0	8745	768	27	4	88	4	LCE3E	1	152538491	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	453554	152538491	96712130	91	124792											
LCE1E	353135	broad.mit.edu	37	chr1	152759771	152759772	+	5'UTR	DNP	CC	AA	AA													cagctcctaagtacctactgCcgagatgtcctgccagcaga							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152759772	AA	AA	152759771	1	1	145	0	1	0	0	0	0	0	0	0	8735	754	26	3		3	LCE1E	1	152759771	5'UTR	DNP	CC	TCGA-49-6743-01A-11D-1855-08	221280	152759771	96490850	92	124793											
SPRR2E	6704	broad.mit.edu	37	chr1	153066113	153066113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggctgtggacactttgGtggtgggcagggctcagggc	20	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153066113	T	T	153066113	3	4	145	1	0	0	0	0	1	0	0	0	15218	1261	44	3	107	3	SPRR2E	1	153066113	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	306342	153066113	96184508	93	124794											
DENND4B	9909	broad.mit.edu	37	chr1	153916599	153916599	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacgggttgagttccaccCagaagtccagcactgagttc	11	11	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153916599	A	A	153916599	2	1	145	1	0	0	0	0	0	0	0	1	4474	581	21	2		2	DENND4B	1	153916599	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	850486	153916599	95334022	94	124795											
NUP210L	91181	broad.mit.edu	37	chr1	154033352	154033352	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaagttttttaattgttaTgctattaattttaataactt	4	2	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154033352	C	C	154033352	1	2	145	0	1	0	0	0	0	0	0	0	10856	1479	51	5		5	NUP210L	1	154033352	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	116753	154033352	95217269	95	124796											
IL6R	3570	broad.mit.edu	37	chr1	154422427	154422427	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgatgataatattctcttcaGagattctgcaaatgcgacaa	7	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154422427	C	C	154422427	3	2	145	1	0	0	0	0	1	0	0	0	7772	942	33	4	1067	4	IL6R	1	154422427	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	389075	154422427	94828194	96	124797											
KCNN3	3782	broad.mit.edu	37	chr1	154687378	154687378	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagcttggaggaacttcctCtggtgtttcctcactttggc	10	10	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154687378	A	A	154687378	3	1	145	1	0	0	0	0	1	0	0	0	8150	912	32	3	404	3	KCNN3	1	154687378	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	264951	154687378	94563243	97	124798											
KCNN3	3782	broad.mit.edu	37	chr1	154842045	154842046	+	Missense_Mutation	DNP	GA	AG	AG													tggccaagcaagtggtcattGagattgagctggctgccttg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	154842046	AG	AG	154842045	3	1	145	1	0	0	0	0	1	0	0	0	8150	1277	45	4	1853	4	KCNN3	1	154842045	Missense_Mutation	DNP	GA	TCGA-49-6743-01A-11D-1855-08	154667	154842045	94408576	98	124799											
ZBTB7B	51043	broad.mit.edu	37	chr1	154987926	154987926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacaggaactgcctcccctCctgagggtccccagagctac	9	18	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154987926	T	T	154987926	3	4	145	1	0	0	0	0	1	0	0	0	17680	855	30	4	792	4	ZBTB7B	1	154987926	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	145881	154987926	94262695	99	124800											
DCST1	149095	broad.mit.edu	37	chr1	155011917	155011917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggacctcccctcacatcCgctgtgccagcctcctacta	9	18	1	0	rs148510175		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155011917	A	A	155011917	3	1	145	1	0	0	0	0	1	0	0	0	4335	652	23	1	315	1	DCST1	1	155011917	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	23991	155011917	94238704	100	124801											
ASH1L	55870	broad.mit.edu	37	chr1	155448134	155448134	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcttcaaagattccaggacAgatcgggaagagccagtgtc	12	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155448134	G	G	155448134	2	3	145	1	0	0	0	0	0	0	0	1	1045	175	7	5		5	ASH1L	1	155448134	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	436217	155448134	93802487	101	124802											
DAP3	7818	broad.mit.edu	37	chr1	155671644	155671644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacaacccttaaggttagaGccaactttcaaaaagaataa	5	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155671644	T	T	155671644	1	4	145	0	1	0	0	0	0	0	0	0	4267	986	34	3		3	DAP3	1	155671644	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	223510	155671644	93578977	102	124803											
ROBLD3	28956	broad.mit.edu	37	chr1	156025152	156025159	+	Frame_Shift_Del	DEL	ACGACCGG	-	-													cagtaacatctgggccgcctAcgaccggaacgggaaccaag							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156025159	-	-	156025152	7	5	145	1	0	1	0	1	0	0	0	0	13623	391	14	0	173	0	ROBLD3	1	156025152	Frame_Shift_Del	DEL	ACGACCGG	TCGA-49-6743-01A-11D-1855-08	353508	156025152	93225469	103	124804											
IQGAP3	128239	broad.mit.edu	37	chr1	156535997	156535997	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcaggagagatgggcagaGgggaaccagaggaccacatc	15	8	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156535997	A	A	156535997	1	1	145	0	1	0	0	0	0	0	0	0	7886	1015	35	4		4	IQGAP3	1	156535997	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	510845	156535997	92714624	104	124805											
INSRR	3645	broad.mit.edu	37	chr1	156815061	156815061	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccccagccggaggggcccAgctgcccggcggtgccgccc	15	21	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156815061	T	T	156815061	2	4	145	1	0	0	0	0	0	0	0	1	7844	175	7	5		5	INSRR	1	156815061	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	279064	156815061	92435560	105	124806											
INSRR	3645	broad.mit.edu	37	chr1	156823990	156823990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgcggaagtcctccccgGtggctgtgaacatgagcagg	16	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156823990	T	T	156823990	3	4	145	1	0	0	0	0	1	0	0	0	7844	1261	44	3	3785	3	INSRR	1	156823990	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	8929	156823990	92426631	106	124807											
NTRK1	4914	broad.mit.edu	37	chr1	156846215	156846215	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaggaggcgtccgagagTgctcggcaggacttccagcg	16	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156846215	A	A	156846215	3	1	145	1	0	0	0	0	1	0	0	0	10801	1693	59	5	1840	5	NTRK1	1	156846215	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	22225	156846215	92404406	107	124808											
ARHGEF11	9826	broad.mit.edu	37	chr1	156914693	156914693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctggggctccattgtgCcaccctatctggtctctgtc	9	14	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156914693	A	A	156914693	1	1	145	0	1	0	0	0	0	0	0	0	898	754	26	3		3	ARHGEF11	1	156914693	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	68478	156914693	92335928	108	124809											
FCRL3	115352	broad.mit.edu	37	chr1	157667406	157667406	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcttccctttatccccagTttccctaacaaacccagtaa	2	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157667406	G	G	157667406	1	3	145	0	1	0	0	0	0	0	0	0	5853	1740	60	5		5	FCRL3	1	157667406	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	752713	157667406	91583215	109	124810											
CD1C	911	broad.mit.edu	37	chr1	158261821	158261821	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccctaggtttttatactGttgttttcacttttttgttt	6	7	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158261821	A	A	158261821	1	1	145	0	1	0	0	0	0	0	0	0	3006	1392	48	4		4	CD1C	1	158261821	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	594415	158261821	90988800	110	124811											
CD1E	913	broad.mit.edu	37	chr1	158325127	158325127	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattagctggctgtagaatGaatgccccacaaatcttctt	7	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158325127	C	C	158325127	3	2	145	1	0	0	0	0	1	0	0	0	3008	1290	45	4	403	4	CD1E	1	158325127	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	63306	158325127	90925494	111	124812											
OR10K2	391107	broad.mit.edu	37	chr1	158390109	158390110	+	Missense_Mutation	DNP	GG	TT	TT													gagatgccagcttgaggacaGgagcaatgtcacagaagaag							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	158390110	TT	TT	158390109	3	4	145	1	0	0	0	0	1	0	0	0	11008	1000	35	2	392	2	OR10K2	1	158390109	Missense_Mutation	DNP	GG	TCGA-49-6743-01A-11D-1855-08	64982	158390109	90860512	112	124813											
OR10X1	128367	broad.mit.edu	37	chr1	158549292	158549292	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcggtcatatcccatcAaagtgagaatgatacagttt	10	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158549292	G	G	158549292	3	3	145	1	0	0	0	0	1	0	0	0	11016	131	5	5	577	5	OR10X1	1	158549292	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	159183	158549292	90701329	113	124814											
OR6N2	81442	broad.mit.edu	37	chr1	158746544	158746544	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atagctttaatgatttccttGttacgaagactgtagataat	7	5	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158746544	C	C	158746544	3	2	145	1	0	0	0	0	1	0	0	0	11301	1368	48	4	74	4	OR6N2	1	158746544	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	197252	158746544	90504077	114	124815											
CADM3	57863	broad.mit.edu	37	chr1	159163608	159163608	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctgtatgttaggtttacTctgtgtctctctctgtgtgt	9	7	4	0	rs3026989	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159163608	A	A	159163608	1	1	145	0	1	0	0	0	0	0	0	0	2594	1566	54	5		5	CADM3	1	159163608	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	417064	159163608	90087013	115	124816											
DARC	2532	broad.mit.edu	37	chr1	159175928	159175928	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagccaaggggctgaagaaGgcattgggtatggggccagg	20	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159175928	C	C	159175928	3	2	145	1	0	0	0	0	1	0	0	0	4273	991	35	4	732	4	DARC	1	159175928	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	12320	159175928	90074693	116	124817											
ATP1A2	477	broad.mit.edu	37	chr1	160109659	160109659	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccaacctctgatgctgctGacactctcctccattgcttt	6	15	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160109659	A	A	160109659	1	1	145	0	1	0	0	0	0	0	0	0	1133	1305	45	4		4	ATP1A2	1	160109659	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	933731	160109659	89140962	117	124818											
CD244	51744	broad.mit.edu	37	chr1	160808220	160808220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccagctgagagagaccCcagcctccgggatgacatac	11	14	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160808220	A	A	160808220	1	1	145	0	1	0	0	0	0	0	0	0	3017	638	22	2		2	CD244	1	160808220	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	698561	160808220	88442401	118	124819											
ITLN2	142683	broad.mit.edu	37	chr1	160914948	160914948	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcatctatagaacaagagTacagccgcctccgttatctc	6	13	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160914948	C	C	160914948	2	2	145	1	0	0	0	0	0	0	0	1	7981	1625	57	5		5	ITLN2	1	160914948	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	106728	160914948	88335673	119	124820											
FCGR2A	2212	broad.mit.edu	37	chr1	161475296	161475296	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtctcagaatgtatgtccCagaaacctgtggctgcttca	9	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161475296	T	T	161475296	2	4	145	1	0	0	0	0	0	0	0	1	5838	581	21	4		4	FCGR2A	1	161475296	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	560348	161475296	87775325	120	124821											
FCRLB	127943	broad.mit.edu	37	chr1	161693311	161693311	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgggccacctacttctgccCtctcacaagaagagcattga	8	13	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161693311	G	G	161693311	2	3	145	1	0	0	0	0	0	0	0	1	5858	668	24	4		4	FCRLB	1	161693311	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	218015	161693311	87557310	121	124822											
ATF6	22926	broad.mit.edu	37	chr1	161761755	161761755	+	Intron	SNP	C	T	T													ttaagtacttttcttcagttCattcaggtatatgtactgta							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161761755	T	T	161761755	1	4	145	0	1	0	0	0	0	0	0	0	1088	841	29	4		4	ATF6	1	161761755	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	68444	161761755	87488866	122	124823	542	2									
ATF6	22926	broad.mit.edu	37	chr1	161761759	161761759	+	Intron	SNP	C	G	G													gtacttttcttcagttcattCaggtatatgtactgtagcta							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161761759	G	G	161761759	1	3	145	0	1	0	0	0	0	0	0	0	1088	841	29	4		4	ATF6	1	161761759	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4	161761759	87488862	123	124824	542	2									
OLFML2B	25903	broad.mit.edu	37	chr1	161967494	161967494	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcaaaggcttaactccActtgccattcccataaagaa	6	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161967494	T	T	161967494	1	4	145	0	1	0	0	0	0	0	0	0	10953	174	6	5		5	OLFML2B	1	161967494	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	205735	161967494	87283127	124	124825											
UAP1	6675	broad.mit.edu	37	chr1	162558376	162558376	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttaaatgctcttcactttGaaaatcttagtattggttgt	6	6	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162558376	C	C	162558376	1	2	145	0	1	0	0	0	0	0	0	0	16951	1305	45	4		4	UAP1	1	162558376	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	590882	162558376	86692245	125	124826											
DDR2	4921	broad.mit.edu	37	chr1	162725147	162725148	+	Intron	DNP	GG	AT	AT													attaaaaactccaacttctgGgaaatgaaggcaatcaaatc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	162725148	AT	AT	162725147	1	1	145	0	1	0	0	0	0	0	0	0	4370	1247	43	4		4	DDR2	1	162725147	Intron	DNP	GG	TCGA-49-6743-01A-11D-1855-08	166771	162725147	86525474	126	124827											
PBX1	5087	broad.mit.edu	37	chr1	164790683	164790683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattgcattaatatggcatGcccaaatggtggcctgcctg	11	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164790683	T	T	164790683	1	4	145	0	1	0	0	0	0	0	0	0	11586	1334	46	3		3	PBX1	1	164790683	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2065536	164790683	84459938	127	124828											
RXRG	6258	broad.mit.edu	37	chr1	165397868	165397868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaagcacgcattatggaCctgctgagtgctggttctgc	13	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165397868	A	A	165397868	1	1	145	0	1	0	0	0	0	0	0	0	13876	522	18	3		3	RXRG	1	165397868	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	607185	165397868	83852753	128	124829											
RXRG	6258	broad.mit.edu	37	chr1	165398074	165398074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggcattgaggggggtcCccactgcactcagagtccgt	14	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165398074	A	A	165398074	3	1	145	1	0	0	0	0	1	0	0	0	13876	623	22	2	1248	2	RXRG	1	165398074	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	206	165398074	83852547	129	124830											
ILDR2	387597	broad.mit.edu	37	chr1	166904644	166904644	+	Frame_Shift_Del	DEL	G	-	-													cccaaagggacagaggggatGgagtaagggccggggacacc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	166904644	-	-	166904644	7	5	145	1	0	1	0	1	0	0	0	0	7780	1335	47	0	1165	0	ILDR2	1	166904644	Frame_Shift_Del	DEL	G	TCGA-49-6743-01A-11D-1855-08	1506570	166904644	82345977	130	124831											
ILDR2	387597	broad.mit.edu	37	chr1	166905813	166905813	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcgctctgtctccccagcGgtcactgtactcacaggctt	9	15	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166905813	A	A	166905813	1	1	145	0	1	0	0	0	0	0	0	0	7780	1131	39	4		4	ILDR2	1	166905813	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1169	166905813	82344808	131	124832											
MAEL	84944	broad.mit.edu	37	chr1	166987041	166987041	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaaattagattctgatagTgagatttttatttcttttaa	5	2	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166987041	A	A	166987041	1	1	145	0	1	0	0	0	0	0	0	0	9242	1711	59	5		5	MAEL	1	166987041	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	81228	166987041	82263580	132	124833											
F5	2153	broad.mit.edu	37	chr1	169541586	169541586	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaggcccaagaagtcctgtGaaaacaaatatttaaactat	7	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169541586	A	A	169541586	1	1	145	0	1	0	0	0	0	0	0	0	5391	1305	45	4		4	F5	1	169541586	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2554545	169541586	79709035	133	124834											
DNM3	26052	broad.mit.edu	37	chr1	171956843	171956843	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaagaaatttacagattttGatgaagttcgccttgagatt	9	4	0	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171956843	C	C	171956843	3	2	145	1	0	0	0	0	1	0	0	0	4713	1290	45	4	293	4	DNM3	1	171956843	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2415257	171956843	77293778	134	124835											
SERPINC1	462	broad.mit.edu	37	chr1	173883728	173883728	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgtcattacaggcacccAgcttggtcatagcaaaagcc	11	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173883728	T	T	173883728	3	4	145	1	0	0	0	0	1	0	0	0	14222	188	7	5	1047	5	SERPINC1	1	173883728	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1926885	173883728	75366893	135	124836											
TNR	7143	broad.mit.edu	37	chr1	175292522	175292522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggactgccgttttctccCtgccatgagacggtggttgt	12	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175292522	A	A	175292522	3	1	145	1	0	0	0	0	1	0	0	0	16461	681	24	2	32	2	TNR	1	175292522	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1408794	175292522	73958099	136	124837											
TNR	7143	broad.mit.edu	37	chr1	175306810	175306810	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggggatgagggaacacccGgcctcctgcaaggaaaatag	14	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175306810	A	A	175306810	3	1	145	1	0	0	0	0	1	0	0	0	16461	1115	39	4	708	4	TNR	1	175306810	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	14288	175306810	73943811	137	124838											
TNR	7143	broad.mit.edu	37	chr1	175372465	175372465	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccccagggcacctcagttCcctgcagtcctcgccagtgt	10	17	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175372465	T	T	175372465	3	4	145	1	0	0	0	0	1	0	0	0	16461	864	30	4	3369	4	TNR	1	175372465	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	65655	175372465	73878156	138	124839											
TNR	7143	broad.mit.edu	37	chr1	175372608	175372608	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagatgcactggccatccAcacacaccccccggctggag	9	18	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175372608	T	T	175372608	3	4	145	1	0	0	0	0	1	0	0	0	16461	159	6	5	3512	5	TNR	1	175372608	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	143	175372608	73878013	139	124840											
RFWD2	64326	broad.mit.edu	37	chr1	176104162	176104162	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtacctgtgtgatggagaagGagcttcaaattgaggcactg	14	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176104162	A	A	176104162	3	1	145	1	0	0	0	0	1	0	0	0	13368	1174	41	4	1295	4	RFWD2	1	176104162	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	731554	176104162	73146459	140	124841											
ASTN1	460	broad.mit.edu	37	chr1	176915100	176915100	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtccggcagccacttcCttggaatggttgttgtaacc	10	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176915100	T	T	176915100	2	4	145	1	0	0	0	0	0	0	0	1	1068	680	24	4		4	ASTN1	1	176915100	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	810938	176915100	72335521	141	124842											
RASAL2	9462	broad.mit.edu	37	chr1	178269130	178269130	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttgattaactagataCctgtggaagggggacaggag	14	5	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178269130	T	T	178269130	3	4	145	1	0	0	0	0	1	0	0	0	13172	507	18	4	344	4	RASAL2	1	178269130	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1354030	178269130	70981491	142	124843											
ABL2	27	broad.mit.edu	37	chr1	179077914	179077914	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttttggaagcatgtcatTggccctgtccacattctctt	7	10	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179077914	A	A	179077914	3	1	145	1	0	0	0	0	1	0	0	0	93	1812	63	5	1064	5	ABL2	1	179077914	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	808784	179077914	70172707	143	124844											
SOAT1	6646	broad.mit.edu	37	chr1	179310484	179310484	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaggcgatgctgtcctcGgctaaaataataataatgat	8	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179310484	A	A	179310484	1	1	145	0	1	0	0	0	0	0	0	0	15024	1131	39	4		4	SOAT1	1	179310484	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	232570	179310484	69940137	144	124845											
CACNA1E	777	broad.mit.edu	37	chr1	181701927	181701927	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcagcaggaggcagggggagGagaggctgtggtgacctttg	20	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181701927	A	A	181701927	3	1	145	1	0	0	0	0	1	0	0	0	2568	1174	41	4	2783	4	CACNA1E	1	181701927	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2391443	181701927	67548694	145	124846											
CACNA1E	777	broad.mit.edu	37	chr1	181714438	181714438	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttgagacctttatcttaTggaggcaatgggtgtgaaca	11	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181714438	C	C	181714438	1	2	145	0	1	0	0	0	0	0	0	0	2568	1479	51	5		5	CACNA1E	1	181714438	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	12511	181714438	67536183	146	124847											
CACNA1E	777	broad.mit.edu	37	chr1	181727923	181727923	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccctgtacctatgagctGgccctgaagtacctgaatat	9	12	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181727923	A	A	181727923	2	1	145	1	0	0	0	0	0	0	0	1	2568	1335	47	4		4	CACNA1E	1	181727923	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	13485	181727923	67522698	147	124848											
LAMC1	3915	broad.mit.edu	37	chr1	183079766	183079766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtggaggagggcaactgCggaaagtgccagtgaatgcc	17	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183079766	A	A	183079766	3	1	145	1	0	0	0	0	1	0	0	0	8686	768	27	3	1012	3	LAMC1	1	183079766	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1351843	183079766	66170855	148	124849											
NMNAT2	23057	broad.mit.edu	37	chr1	183253712	183253712	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggggggatacgttgtgcAcaagtacgcacacacacaca	12	10	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183253712	T	T	183253712	1	4	145	0	1	0	0	0	0	0	0	0	10594	174	6	5		5	NMNAT2	1	183253712	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	173946	183253712	65996909	149	124850											
NMNAT2	23057	broad.mit.edu	37	chr1	183273936	183273936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggccatcagagagtaacaCaaagtggtgcagctgctccc	11	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183273936	A	A	183273936	1	1	145	0	1	0	0	0	0	0	0	0	10594	493	17	3		3	NMNAT2	1	183273936	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	20224	183273936	65976685	150	124851											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185276525	185276525	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaatataatttcaatgtatTatttcataatcattactcac	1	7	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185276525	A	A	185276525	1	1	145	0	1	0	0	0	0	0	0	0	8000	1769	61	5		5	IVNS1ABP	1	185276525	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2002589	185276525	63974096	151	124852											
HMCN1	83872	broad.mit.edu	37	chr1	185703873	185703873	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggactgagcacagtgctTaggcgctgagggggaaaaag	18	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185703873	C	C	185703873	1	2	145	0	1	0	0	0	0	0	0	0	7287	1769	61	5		5	HMCN1	1	185703873	5'UTR	SNP	T	TCGA-49-6743-01A-11D-1855-08	427348	185703873	63546748	152	124853											
C1orf27	54953	broad.mit.edu	37	chr1	186375307	186375307	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgattataaatttgacgatGagtcagctgaagaaatcagg	11	4	2	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186375307	A	A	186375307	3	1	145	1	0	0	0	0	1	0	0	0	2058	1291	45	4	1135	4	C1orf27	1	186375307	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	671434	186375307	62875314	153	124854											
PLA2G4A	5321	broad.mit.edu	37	chr1	186957600	186957600	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtaatgttgaggcaagaaGatttttcaacaaggagtttc	10	4	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186957600	T	T	186957600	3	4	145	1	0	0	0	0	1	0	0	0	12096	942	33	3	2276	3	PLA2G4A	1	186957600	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	582293	186957600	62293021	154	124855											
KCNT2	343450	broad.mit.edu	37	chr1	196251442	196251442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgtagtgtccagtccCaacagaagtctcgtgataga	11	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196251442	A	A	196251442	3	1	145	1	0	0	0	0	1	0	0	0	8162	593	21	2	685	2	KCNT2	1	196251442	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	9293842	196251442	52999179	155	124856											
F13B	2165	broad.mit.edu	37	chr1	197031844	197031844	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatttcaaattatgccttcAttttgtagaaagacagattg	8	5	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197031844	T	T	197031844	1	4	145	0	1	0	0	0	0	0	0	0	5384	232	8	5		5	F13B	1	197031844	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	780402	197031844	52218777	156	124857											
CRB1	23418	broad.mit.edu	37	chr1	197396576	197396576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcctctattttgaCattgaagagtatgtggcagg	9	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197396576	A	A	197396576	1	1	145	0	1	0	0	0	0	0	0	0	3880	493	17	3		3	CRB1	1	197396576	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	364732	197396576	51854045	157	124858											
DENND1B	163486	broad.mit.edu	37	chr1	197480959	197480959	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtgtgctcaatgtatcaaGaatctctcctagtaagtcca	8	9	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197480959	A	A	197480959	3	1	145	1	0	0	0	0	1	0	0	0	4467	942	33	4	621	4	DENND1B	1	197480959	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	84383	197480959	51769662	158	124859											
NR5A2	2494	broad.mit.edu	37	chr1	200008904	200008904	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgcatggggaacagggccaGatgccggaaaacatgcaagg	15	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200008904	C	C	200008904	3	2	145	1	0	0	0	0	1	0	0	0	10731	933	33	4	189	4	NR5A2	1	200008904	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2527945	200008904	49241717	159	124860											
CACNA1S	779	broad.mit.edu	37	chr1	201035348	201035348	+	Intron	SNP	C	A	A													ctggggctcctgcccgggccCtctctcaccttcaacccctt							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201035348	A	A	201035348	1	1	145	0	1	0	0	0	0	0	0	0	2573	696	24	2		2	CACNA1S	1	201035348	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1026444	201035348	48215273	160	124861	543	2									
CACNA1S	779	broad.mit.edu	37	chr1	201035350	201035350	+	Intron	SNP	C	T	T													ggggctcctgcccgggccctCtctcaccttcaaccccttgg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201035350	T	T	201035350	1	4	145	0	1	0	0	0	0	0	0	0	2573	928	32	4		4	CACNA1S	1	201035350	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2	201035350	48215271	161	124862	543	2									
MYBPH	4608	broad.mit.edu	37	chr1	203144721	203144721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggctgtggaggctgtagGggcctgtggggcaggggcct	22	7	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203144721	T	T	203144721	3	4	145	1	0	0	0	0	1	0	0	0	10108	1232	43	2	1310	2	MYBPH	1	203144721	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2109371	203144721	46105900	162	124863											
ATP2B4	493	broad.mit.edu	37	chr1	203652495	203652495	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatggaggtgtacagaatctCtgcagtagactgaaaacctc	10	8	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203652495	G	G	203652495	2	3	145	1	0	0	0	0	0	0	0	1	1146	900	32	4		4	ATP2B4	1	203652495	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	507774	203652495	45598126	163	124864											
SNRPE	6635	broad.mit.edu	37	chr1	203830709	203830709	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgccgccgcgtgaccttcAcacttccgcttccggttctt	8	17	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203830709	T	T	203830709	1	4	145	0	1	0	0	0	0	0	0	0	14981	174	6	5		5	SNRPE	1	203830709	5'Flank	SNP	A	TCGA-49-6743-01A-11D-1855-08	178214	203830709	45419912	164	124865											
PLEKHA6	22874	broad.mit.edu	37	chr1	204218336	204218336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctcggagctgctgcacCagccggtcctgctccctcac	10	18	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204218336	A	A	204218336	2	1	145	1	0	0	0	0	0	0	0	1	12155	581	21	2		2	PLEKHA6	1	204218336	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	387627	204218336	45032285	165	124866											
LRRN2	10446	broad.mit.edu	37	chr1	204587561	204587561	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtccttcgtccctgcctggCtggaggagagcacggcccac	13	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204587561	G	G	204587561	3	3	145	1	0	0	0	0	1	0	0	0	9122	796	28	4	585	4	LRRN2	1	204587561	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	369225	204587561	44663060	166	124867											
LRRN2	10446	broad.mit.edu	37	chr1	204587761	204587761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggagtgacccagtagatctCgggttcgggttcggccagtg	16	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204587761	T	T	204587761	3	4	145	1	0	0	0	0	1	0	0	0	9122	893	31	4	785	4	LRRN2	1	204587761	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	200	204587761	44662860	167	124868											
AVPR1B	553	broad.mit.edu	37	chr1	206224616	206224616	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggctgtgctgctgacccTgggccagctgggccgcaagc	15	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206224616	A	A	206224616	3	1	145	1	0	0	0	0	1	0	0	0	1237	1580	55	5	178	5	AVPR1B	1	206224616	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1636855	206224616	43026005	168	124869											
LGTN	1939	broad.mit.edu	37	chr1	206775925	206775925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgaaaggaacccattcCcaggtaccaaagctcccagc	8	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206775925	A	A	206775925	1	1	145	0	1	0	0	0	0	0	0	0	8832	638	22	2		2	LGTN	1	206775925	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	551309	206775925	42474696	169	124870											
PIGR	5284	broad.mit.edu	37	chr1	207105951	207105951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcttaagttagttcatccCtggaagggagatctgggggc	15	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207105951	A	A	207105951	1	1	145	0	1	0	0	0	0	0	0	0	11992	696	24	2		2	PIGR	1	207105951	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	330026	207105951	42144670	170	124871											
C4BPB	725	broad.mit.edu	37	chr1	207271573	207271573	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttccagtctgcaagttgatCcaggaagctcccaaaccaga	8	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207271573	A	A	207271573	2	1	145	1	0	0	0	0	0	0	0	1	2273	845	30	3		3	C4BPB	1	207271573	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	165622	207271573	41979048	171	124872											
CR2	1380	broad.mit.edu	37	chr1	207644887	207644887	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagctgaaataatgtgagatCtatacatttcctgggagatt	10	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207644887	A	A	207644887	1	1	145	0	1	0	0	0	0	0	0	0	3874	928	32	3		3	CR2	1	207644887	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	373314	207644887	41605734	172	124873											
PLXNA2	5362	broad.mit.edu	37	chr1	208252544	208252544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaatttgcactcctctcCcactgtcttggggtcagctc	7	15	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208252544	A	A	208252544	1	1	145	0	1	0	0	0	0	0	0	0	12215	638	22	2		2	PLXNA2	1	208252544	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	607657	208252544	40998077	173	124874											
C1orf107	27042	broad.mit.edu	37	chr1	210016917	210016917	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaattacttcaagaaggagGaattgaattttacccacatc	7	7	1	2	rs142546646	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210016917	T	T	210016917	4	4	145	1	0	0	0	0	0	1	0	0	2001	1175	41	3	1945	3	C1orf107	1	210016917	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1764373	210016917	39233704	174	124875											
HHAT	55733	broad.mit.edu	37	chr1	210522330	210522330	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaaggagccatgctgccccGatgggaactggcactttacc	11	14	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210522330	A	A	210522330	3	1	145	1	0	0	0	0	1	0	0	0	7156	1058	37	4	111	4	HHAT	1	210522330	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	505413	210522330	38728291	175	124876											
SMYD2	56950	broad.mit.edu	37	chr1	214497962	214497962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccagctcatttttttcctTtctccctttttcttgctgca	3	14	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214497962	A	A	214497962	1	1	145	0	1	0	0	0	0	0	0	0	14936	1856	64	5		5	SMYD2	1	214497962	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	3975632	214497962	34752659	176	124877											
USH2A	7399	broad.mit.edu	37	chr1	216172295	216172295	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatgatcctggaaaagttcTgtactgttatagatgacact	8	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216172295	A	A	216172295	2	1	145	1	0	0	0	0	0	0	0	1	17162	1567	55	5		5	USH2A	1	216172295	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	1674333	216172295	33078326	177	124878											
ESRRG	2104	broad.mit.edu	37	chr1	216737570	216737570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaatgtacctggaatatGcttcgcccatccaatgataa	7	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216737570	T	T	216737570	3	4	145	1	0	0	0	0	1	0	0	0	5304	1319	46	3	535	3	ESRRG	1	216737570	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	565275	216737570	32513051	178	124879											
SPATA17	128153	broad.mit.edu	37	chr1	217824369	217824369	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgaattgtaggagagtAttttaacaaagatttaactg	8	3	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217824369	G	G	217824369	1	3	145	0	1	0	0	0	0	0	0	0	15118	464	16	5		5	SPATA17	1	217824369	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1086799	217824369	31426252	179	124880											
TGFB2	7042	broad.mit.edu	37	chr1	218614442	218614442	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaataattttaaattgcctActcagtgctgtgactgctaa	6	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218614442	T	T	218614442	1	4	145	0	1	0	0	0	0	0	0	0	15941	406	14	5		5	TGFB2	1	218614442	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	790073	218614442	30636179	180	124881											
EPRS	2058	broad.mit.edu	37	chr1	220145484	220145484	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatgagtcttaaggtcttcaGaagccctaccaaacaaaatt	6	9	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220145484	A	A	220145484	3	1	145	1	0	0	0	0	1	0	0	0	5233	942	33	4	300	4	EPRS	1	220145484	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1531042	220145484	29105137	181	124882											
MARK1	4139	broad.mit.edu	37	chr1	220808735	220808735	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtttgaaggtggtgaatcGttatccagtggaaacttgtg	13	4	0	2	rs148023363		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220808735	C	C	220808735	2	2	145	1	0	0	0	0	0	0	0	1	9404	1132	40	4		4	MARK1	1	220808735	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	663251	220808735	28441886	182	124883											
OBSCN	84033	broad.mit.edu	37	chr1	228529168	228529168	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgacctgaacgaccaggtgGagggggatgaccgcgccttc	15	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228529168	T	T	228529168	4	4	145	1	0	0	0	0	0	1	0	0	10907	1175	41	3	18177	3	OBSCN	1	228529168	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	7720433	228529168	20721453	183	124884											
OBSCN	84033	broad.mit.edu	37	chr1	228559662	228559662	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatgccctcctggctccttCcctccaggatcttgcaaaga	7	17	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228559662	T	T	228559662	2	4	145	1	0	0	0	0	0	0	0	1	10907	854	30	4		4	OBSCN	1	228559662	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	30494	228559662	20690959	184	124885											
RHOU	58480	broad.mit.edu	37	chr1	228873487	228873487	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgccggacaggtcagtatCacgttacagctcagtgctgg	12	11	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228873487	G	G	228873487	1	3	145	0	1	0	0	0	0	0	0	0	13454	841	29	4		4	RHOU	1	228873487	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	313825	228873487	20377134	185	124886											
DISC1	27185	broad.mit.edu	37	chr1	231931037	231931037	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacttaaagaaatcactActaaggtaagtacctttata	5	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231931037	G	G	231931037	3	3	145	1	0	0	0	0	1	0	0	0	4578	391	14	5	2083	5	DISC1	1	231931037	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	3057550	231931037	17319584	186	124887											
PCNXL2	80003	broad.mit.edu	37	chr1	233225746	233225746	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcctaacagaggaaggcaGaggagccttctgaagtgcaa	12	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233225746	C	C	233225746	1	2	145	0	1	0	0	0	0	0	0	0	11686	957	33	4		4	PCNXL2	1	233225746	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1294709	233225746	16024875	187	124888											
SLC35F3	148641	broad.mit.edu	37	chr1	234367459	234367459	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcacgtctgcaagtccacaGagaagcagtctgtgaagcag	13	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234367459	A	A	234367459	3	1	145	1	0	0	0	0	1	0	0	0	14704	943	33	4	590	4	SLC35F3	1	234367459	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1141713	234367459	14883162	188	124889											
HEATR1	55127	broad.mit.edu	37	chr1	236719428	236719429	+	Frame_Shift_Ins	INS	-	T	T													cttctcaatctgcttgtaagINStttttttgatggcgggcaac							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236719429	T	T	236719428	7	5	145	1	0	1	1	0	0	0	0	0	7094	1029	36	0	980	0	HEATR1	1	236719428	Frame_Shift_Ins	INS	-	TCGA-49-6743-01A-11D-1855-08	2351969	236719428	12531193	189	124890											
HEATR1	55127	broad.mit.edu	37	chr1	236722329	236722329	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatatattttgctgcagcTtgttattcaaaaggtccagc	9	7	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236722329	A	A	236722329	3	1	145	1	0	0	0	0	1	0	0	0	7094	1609	56	5	1601	5	HEATR1	1	236722329	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	2901	236722329	12528292	190	124891											
RYR2	6262	broad.mit.edu	37	chr1	237753955	237753955	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctaggtgaccagaatagacGgcaccatagacagttcccca	10	12	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237753955	C	C	237753955	3	2	145	1	0	0	0	0	1	0	0	0	13880	1116	39	4	3945	4	RYR2	1	237753955	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1031626	237753955	11496666	191	124892											
RYR2	6262	broad.mit.edu	37	chr1	237755119	237755119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtccttgctgatgatcGggatgactatgatttcttga	11	6	1	6			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237755119	T	T	237755119	3	4	145	1	0	0	0	0	1	0	0	0	13880	1116	39	1	4367	1	RYR2	1	237755119	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1164	237755119	11495502	192	124893											
RYR2	6262	broad.mit.edu	37	chr1	237802366	237802366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagattgctcattcggaGgcctgagtgttttggtcctg	15	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237802366	T	T	237802366	3	4	145	1	0	0	0	0	1	0	0	0	13880	1000	35	2	7162	2	RYR2	1	237802366	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	47247	237802366	11448255	193	124894											
RYR2	6262	broad.mit.edu	37	chr1	237837442	237837442	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctatgatacactgacagcCaaagagaaagccaaggatag	9	10	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237837442	A	A	237837442	2	1	145	1	0	0	0	0	0	0	0	1	13880	581	21	2		2	RYR2	1	237837442	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	35076	237837442	11413179	194	124895											
RYR2	6262	broad.mit.edu	37	chr1	237870252	237870252	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatatgtacttctccagctcTcagtttgccaactaatgtgg	7	10	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237870252	C	C	237870252	3	2	145	1	0	0	0	0	1	0	0	0	13880	1551	54	5	9854	5	RYR2	1	237870252	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	32810	237870252	11380369	195	124896											
RYR2	6262	broad.mit.edu	37	chr1	237880687	237880687	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtaagtctccttttcatcCcagcggtaatgatcatctga	8	10	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237880687	T	T	237880687	1	4	145	0	1	0	0	0	0	0	0	0	13880	638	22	4		4	RYR2	1	237880687	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	10435	237880687	11369934	196	124897											
RYR2	6262	broad.mit.edu	37	chr1	237895504	237895504	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaataaagacacccgtGtctgagtattctgtgccatg	10	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237895504	C	C	237895504	1	2	145	0	1	0	0	0	0	0	0	0	13880	1392	48	4		4	RYR2	1	237895504	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	14817	237895504	11355117	197	124898											
FMN2	56776	broad.mit.edu	37	chr1	240306310	240306310	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaggcacggtgagcagcCcagccatggccactggactc	14	13	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240306310	A	A	240306310	1	1	145	0	1	0	0	0	0	0	0	0	6008	638	22	2		2	FMN2	1	240306310	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2410806	240306310	8944311	198	124899											
FMN2	56776	broad.mit.edu	37	chr1	240371687	240371687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctccgccccctctacctgGagtgggaatacctcctccgc	8	19	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240371687	T	T	240371687	3	4	145	1	0	0	0	0	1	0	0	0	6008	1174	41	3	3593	3	FMN2	1	240371687	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	65377	240371687	8878934	199	124900											
WDR64	128025	broad.mit.edu	37	chr1	241904916	241904916	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaatgtcatgctttacAacaaatattttcatcaagta	3	7	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241904916	C	C	241904916	3	2	145	1	0	0	0	0	1	0	0	0	17442	130	5	5	1432	5	WDR64	1	241904916	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1533229	241904916	7345705	200	124901											
C1orf101	257044	broad.mit.edu	37	chr1	244769071	244769071	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacacggcagggatgactAtagctttaataatactatgg	9	6	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	244769071	G	G	244769071	3	3	145	1	0	0	0	0	1	0	0	0	1996	449	16	5	2448	5	C1orf101	1	244769071	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	2864155	244769071	4481550	201	124902											
AHCTF1	25909	broad.mit.edu	37	chr1	247067394	247067394	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacattaaacatctcttacTgtccaagtaagtttagtttg	5	7	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247067394	A	A	247067394	1	1	145	0	1	0	0	0	0	0	0	0	408	1595	55	5		5	AHCTF1	1	247067394	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2298323	247067394	2183227	202	124903											
ZNF670	93474	broad.mit.edu	37	chr1	247200851	247200852	+	Frame_Shift_Ins	INS	-	T	T													tttttctccagtatgagtccINStttcatggcttcgaagggca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247200852	T	T	247200851	7	5	145	1	0	1	1	0	0	0	0	0	18204	681	24	0	103	0	ZNF670	1	247200851	Frame_Shift_Ins	INS	-	TCGA-49-6743-01A-11D-1855-08	133457	247200851	2049770	203	124904											
OR2W5	441932	broad.mit.edu	37	chr1	247655069	247655069	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctggtgccgctctccctCatcctcatctcctatggcgt	7	18	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247655069	T	T	247655069	3	4	145	1	0	0	0	0	1	0	0	0	11128	826	29	4	642	4	OR2W5	1	247655069	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	454218	247655069	1595552	204	124905											
OR1C1	26188	broad.mit.edu	37	chr1	247920946	247920946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaatagacggcgatggCtgtgccgtaaaacaacacca	11	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247920946	A	A	247920946	3	1	145	1	0	0	0	0	1	0	0	0	11046	797	28	3	183	3	OR1C1	1	247920946	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	265877	247920946	1329675	205	124906											
OR2L13	284521	broad.mit.edu	37	chr1	248185758	248185758	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgtatcccatattgcaagtCcagagccatcaatcattttt	5	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248185758	A	A	248185758	1	1	145	0	1	0	0	0	0	0	0	0	11100	870	30	3		3	OR2L13	1	248185758	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	264812	248185758	1064863	206	124907											
OR2L13	284521	broad.mit.edu	37	chr1	248262731	248262731	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttgttgggtctgcttccCccaaatcaaactggaatatt	7	9	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248262731	A	A	248262731	2	1	145	1	0	0	0	0	0	0	0	1	11100	610	22	2		2	OR2L13	1	248262731	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	76973	248262731	987890	207	124908											
OR2M5	127059	broad.mit.edu	37	chr1	248308574	248308574	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtggccttcatgggaaActctgtcatggttctcctca	9	11	6	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248308574	G	G	248308574	3	3	145	1	0	0	0	0	1	0	0	0	11107	43	2	5	127	5	OR2M5	1	248308574	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	45843	248308574	942047	208	124909											
OR2M5	127059	broad.mit.edu	37	chr1	248309310	248309310	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactcccatgctgaatccCctcatctacagcctccgcaa	4	19	3	1	rs150067628	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248309310	A	A	248309310	2	1	145	1	0	0	0	0	0	0	0	1	11107	610	22	2		2	OR2M5	1	248309310	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	736	248309310	941311	209	124910											
OR2M3	127062	broad.mit.edu	37	chr1	248366656	248366656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtccatttctatggctgGttgtgccacacaaattttct	7	10	2	0	rs143959338		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248366656	T	T	248366656	3	4	145	1	0	0	0	0	1	0	0	0	11105	1261	44	3	289	3	OR2M3	1	248366656	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	57346	248366656	883965	210	124911											
OR2T33	391195	broad.mit.edu	37	chr1	248436751	248436751	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagtgggtggcagacagcCgcatagcggtcataggccat	16	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436751	A	A	248436751	2	1	145	1	0	0	0	0	0	0	0	1	11118	639	23	1		1	OR2T33	1	248436751	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	70095	248436751	813870	211	124912											
OR2T33	391195	broad.mit.edu	37	chr1	248437204	248437204	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttgactgcacagtttcCggacatacgtactgggtatg	11	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248437204	T	T	248437204	1	4	145	0	1	0	0	0	0	0	0	0	11118	667	23	4		4	OR2T33	1	248437204	5'Flank	SNP	C	TCGA-49-6743-01A-11D-1855-08	453	248437204	813417	212	124913											
OR2T12	127064	broad.mit.edu	37	chr1	248458349	248458349	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgcaccaacacgggggcctCgcagaagaagtgatcgatct	12	12	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458349	A	A	248458349	4	1	145	1	0	0	0	0	0	1	0	0	11113	893	31	3	433	3	OR2T12	1	248458349	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	21145	248458349	792272	213	124914											
OR2T4	127074	broad.mit.edu	37	chr1	248525429	248525429	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatcaggctgctggttcCtgggctcagtggatggcttc	14	10	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248525429	T	T	248525429	2	4	145	1	0	0	0	0	0	0	0	1	11121	680	24	4		4	OR2T4	1	248525429	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	67080	248525429	725192	214	124915											
MYT1L	23040	broad.mit.edu	37	chr2	1926275	1926275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttggtcatgtcgaacacCtcttcagacctgtccgagtt	8	14	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1926275	A	A	1926275	3	1	145	1	0	0	0	0	1	0	0	0	10201	680	24	2	2352	2	MYT1L	2	1926275	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08		1926275	241273098	215	124916											
COLEC11	78989	broad.mit.edu	37	chr2	3685139	3685139	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggagacatgggggacaaAggacagaaaggcagtgtggg	18	5	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3685139	G	G	3685139	2	3	145	1	0	0	0	0	0	0	0	1	3743	69	3	5		5	COLEC11	2	3685139	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	1758864	3685139	239514234	216	124917											
ASAP2	8853	broad.mit.edu	37	chr2	9437401	9437401	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggtggcatgcctgagacTcacagcacctccgtcattct	11	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9437401	G	G	9437401	1	3	145	0	1	0	0	0	0	0	0	0	1015	1566	54	5		5	ASAP2	2	9437401	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	5752262	9437401	233761972	217	124918											
TRIB2	28951	broad.mit.edu	37	chr2	12858385	12858385	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgcactcgccagcgactcAtctctccagcgggttttttt	9	15	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12858385	G	G	12858385	1	3	145	0	1	0	0	0	0	0	0	0	16607	232	8	5		5	TRIB2	2	12858385	5'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	3420984	12858385	230340988	218	124919											
RAD51AP2	729475	broad.mit.edu	37	chr2	17697556	17697556	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttgaggacaactcatattCtgacaagtaatttctcttat	6	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17697556	G	G	17697556	3	3	145	1	0	0	0	0	1	0	0	0	13095	912	32	4	1364	4	RAD51AP2	2	17697556	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	4839171	17697556	225501817	219	124920											
MSGN1	343930	broad.mit.edu	37	chr2	17997990	17997990	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctgtggctgggctgcccTgtgagcacggcggggccagc	18	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17997990	A	A	17997990	3	1	145	1	0	0	0	0	1	0	0	0	9963	1580	55	5	207	5	MSGN1	2	17997990	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	300434	17997990	225201383	220	124921											
APOB	338	broad.mit.edu	37	chr2	21250752	21250752	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgagggtagttttcagcAtgctttctttaggaaggtag	13	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21250752	T	T	21250752	3	4	145	1	0	0	0	0	1	0	0	0	787	217	8	5	11740	5	APOB	2	21250752	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	3252762	21250752	221948621	221	124922											
C2orf44	80304	broad.mit.edu	37	chr2	24261839	24261839	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataagaatgcaggctgctgcCtactgccaccaccagcctca	8	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24261839	G	G	24261839	3	3	145	1	0	0	0	0	1	0	0	0	2190	681	24	4	1651	4	C2orf44	2	24261839	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3011087	24261839	218937534	222	124923											
ASXL2	55252	broad.mit.edu	37	chr2	26079285	26079285	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatttcaggaagcaggtctGgaagacctgggtctgtccag	13	8	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26079285	A	A	26079285	1	1	145	0	1	0	0	0	0	0	0	0	1071	1363	47	4		4	ASXL2	2	26079285	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1817446	26079285	217120088	223	124924											
KIF3C	3797	broad.mit.edu	37	chr2	26177091	26177091	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagaggcctgagtaatgaTggctggctgtggggacccgg	19	7	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26177091	C	C	26177091	1	2	145	0	1	0	0	0	0	0	0	0	8372	1479	51	5		5	KIF3C	2	26177091	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	97806	26177091	217022282	224	124925											
C2orf39	92749	broad.mit.edu	37	chr2	26654589	26654589	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaggcaatacaagccaagtCctaaaagccttgggtattca	8	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26654589	G	G	26654589	1	3	145	0	1	0	0	0	0	0	0	0	2186	870	30	4		4	C2orf39	2	26654589	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	477498	26654589	216544784	225	124926											
C2orf18	54978	broad.mit.edu	37	chr2	26998206	26998206	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccccagacttcacacgcAcaggcacacaggcaggactg	9	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26998206	G	G	26998206	1	3	145	0	1	0	0	0	0	0	0	0	2180	174	6	5		5	C2orf18	2	26998206	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	343617	26998206	216201167	226	124927											
EMILIN1	11117	broad.mit.edu	37	chr2	27302068	27302069	+	Missense_Mutation	DNP	GG	TT	TT													ctcagccccggggggccccaGgcccagattgccccccggcc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	27302069	TT	TT	27302068	3	4	145	1	0	0	0	0	1	0	0	0	5135	991	35	2	137	2	EMILIN1	2	27302068	Missense_Mutation	DNP	GG	TCGA-49-6743-01A-11D-1855-08	303862	27302068	215897305	227	124928											
CAD	790	broad.mit.edu	37	chr2	27446666	27446666	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgaagccctgtgggccttGatgatggaaaagtaaagcac	12	7	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27446666	C	C	27446666	1	2	145	0	1	0	0	0	0	0	0	0	2591	1305	45	4		4	CAD	2	27446666	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	144598	27446666	215752707	228	124929											
IFT172	26160	broad.mit.edu	37	chr2	27688470	27688470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgatggggcaaggggagGgggaagggccatctttgtct	20	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27688470	T	T	27688470	1	4	145	0	1	0	0	0	0	0	0	0	7627	1247	43	2		2	IFT172	2	27688470	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	241804	27688470	215510903	229	124930											
PLB1	151056	broad.mit.edu	37	chr2	28812608	28812608	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagcaagtctcactccCgagcagccagtgctctctgg	10	15	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28812608	G	G	28812608	3	3	145	1	0	0	0	0	1	0	0	0	12119	644	23	4	2130	4	PLB1	2	28812608	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1124138	28812608	214386765	230	124931											
XDH	7498	broad.mit.edu	37	chr2	31587159	31587159	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcataagtcccgtttccccCacctctctgtctccctctga	4	18	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31587159	A	A	31587159	1	1	145	0	1	0	0	0	0	0	0	0	17553	609	21	2		2	XDH	2	31587159	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2774551	31587159	211612214	231	124932											
NLRC4	58484	broad.mit.edu	37	chr2	32477605	32477605	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgatccctctagcagcatCctgctccaccttctcgcagc	6	17	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32477605	T	T	32477605	3	4	145	1	0	0	0	0	1	0	0	0	10564	855	30	4	2957	4	NLRC4	2	32477605	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	890446	32477605	210721768	232	124933											
TTC27	55622	broad.mit.edu	37	chr2	33002842	33002842	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatatttattatatagctctGcattctttctaggagtgtgt	7	5	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33002842	C	C	33002842	1	2	145	0	1	0	0	0	0	0	0	0	16821	1334	46	4		4	TTC27	2	33002842	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	525237	33002842	210196531	233	124934											
CRIM1	51232	broad.mit.edu	37	chr2	36703901	36703901	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctgttacatgaacttacAttgagttgagtaaatttcca	6	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36703901	T	T	36703901	1	4	145	0	1	0	0	0	0	0	0	0	3905	232	8	5		5	CRIM1	2	36703901	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3701059	36703901	206495472	234	124935											
EIF2AK2	5610	broad.mit.edu	37	chr2	37347280	37347280	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaaaggcacttagtctttGacctgggtataaaattcaca	8	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37347280	A	A	37347280	3	1	145	1	0	0	0	0	1	0	0	0	5037	1294	45	4	605	4	EIF2AK2	2	37347280	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	643379	37347280	205852093	235	124936											
SLC8A1	6546	broad.mit.edu	37	chr2	40402518	40402518	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaaatccaggcagatctGattacagtggtagggagcca	12	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40402518	T	T	40402518	1	4	145	0	1	0	0	0	0	0	0	0	14820	1305	45	3		3	SLC8A1	2	40402518	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3055238	40402518	202796855	236	124937											
EML4	27436	broad.mit.edu	37	chr2	42522255	42522255	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatctaaagctttatttccCttttcatagacaacaaatga	3	9	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42522255	G	G	42522255	1	3	145	0	1	0	0	0	0	0	0	0	5141	696	24	4		4	EML4	2	42522255	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2119737	42522255	200677118	237	124938											
PLEKHH2	130271	broad.mit.edu	37	chr2	43939499	43939499	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcctgagggcaaacccAccatgaagggattgctcact	11	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43939499	C	C	43939499	3	2	145	1	0	0	0	0	1	0	0	0	12172	159	6	5	2491	5	PLEKHH2	2	43939499	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1417244	43939499	199259874	238	124939											
LRPPRC	10128	broad.mit.edu	37	chr2	44116768	44116768	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagggctcttcacagagatCtaatcctcatgtaattaagt	8	8	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44116768	T	T	44116768	1	4	145	0	1	0	0	0	0	0	0	0	9052	928	32	4		4	LRPPRC	2	44116768	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	177269	44116768	199082605	239	124940											
SRBD1	55133	broad.mit.edu	37	chr2	45620234	45620234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatttcaggctttccaaCctcatacagtgtccctccaa	5	14	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45620234	A	A	45620234	3	1	145	1	0	0	0	0	1	0	0	0	15251	507	18	3	447	3	SRBD1	2	45620234	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1503466	45620234	197579139	240	124941											
NRXN1	9378	broad.mit.edu	37	chr2	50282182	50282182	+	Intron	DEL	C	-	-													ggcgctcgttatcattgtttCctttaaagtttaaagagaca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50282182	-	-	50282182	6	5	145	0	1	1	0	1	0	0	0	0	10760	869	30	0		0	NRXN1	2	50282182	Intron	DEL	C	TCGA-49-6743-01A-11D-1855-08	4661948	50282182	192917191	241	124942											
NRXN1	9378	broad.mit.edu	37	chr2	50692672	50692672	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacaccttgattggaacatGagtcctcttggcaggttgtg	11	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50692672	A	A	50692672	3	1	145	1	0	0	0	0	1	0	0	0	10760	1294	45	4	1542	4	NRXN1	2	50692672	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	410490	50692672	192506701	242	124943											
PNPT1	87178	broad.mit.edu	37	chr2	55887294	55887294	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaaaaattcaccttacctCgtagtgcagcatgaaatttt	6	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55887294	A	A	55887294	4	1	145	1	0	0	0	0	0	1	0	0	12268	893	31	3	1125	3	PNPT1	2	55887294	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5194622	55887294	187312079	243	124944											
NFU1	27247	broad.mit.edu	37	chr2	69646616	69646616	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagagagaggcattggacTcagaaaaaaatgaagagtat	13	3	1	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69646616	C	C	69646616	1	2	145	0	1	0	0	0	0	0	0	0	10481	1566	54	5		5	NFU1	2	69646616	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	13759322	69646616	173552757	244	124945											
DYSF	8291	broad.mit.edu	37	chr2	71817490	71817490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagacatctggctttcgGgcaacaaggggtgctgtttg	15	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71817490	T	T	71817490	1	4	145	0	1	0	0	0	0	0	0	0	4899	1247	43	2		2	DYSF	2	71817490	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2170874	71817490	171381883	245	124946											
ACTG2	72	broad.mit.edu	37	chr2	74146569	74146569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttgcagattattgctcCcccagagcggaagtactcag	9	11	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74146569	A	A	74146569	3	1	145	1	0	0	0	0	1	0	0	0	197	623	22	2	1028	2	ACTG2	2	74146569	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2329079	74146569	169052804	246	124947											
LRRTM4	80059	broad.mit.edu	37	chr2	77746563	77746563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagattgcaatgtctgaagCttattgtaggagaggtccag	12	6	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77746563	A	A	77746563	3	1	145	1	0	0	0	0	1	0	0	0	9129	796	28	3	1354	3	LRRTM4	2	77746563	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3599994	77746563	165452810	247	124948											
REG3G	130120	broad.mit.edu	37	chr2	79253844	79253844	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcttccaccccaggtgaaGaaacccagaaggaactgccc	8	14	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79253844	T	T	79253844	4	4	145	1	0	0	0	0	0	1	0	0	13321	943	33	3	88	3	REG3G	2	79253844	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1507281	79253844	163945529	248	124949											
REG3G	130120	broad.mit.edu	37	chr2	79254247	79254247	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctccctggtgaggagcAttagtaacagctattcatac	9	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79254247	T	T	79254247	3	4	145	1	0	0	0	0	1	0	0	0	13321	217	8	5	293	5	REG3G	2	79254247	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	403	79254247	163945126	249	124950											
LRRTM1	347730	broad.mit.edu	37	chr2	80530456	80530456	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccgcatatgcagcgtggtGagcttccgcagcccgtggaa	14	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80530456	A	A	80530456	2	1	145	1	0	0	0	0	0	0	0	1	9126	1277	45	4		4	LRRTM1	2	80530456	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1276209	80530456	162668917	250	124951											
CTNNA2	1496	broad.mit.edu	37	chr2	80831304	80831304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgtgctgtggctgatcaGgtaatagaagagggaagggt	17	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80831304	T	T	80831304	3	4	145	1	0	0	0	0	1	0	0	0	4047	1014	35	2	2145	2	CTNNA2	2	80831304	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	300848	80831304	162368069	251	124952											
RMND5A	64795	broad.mit.edu	37	chr2	87376966	87376966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctggatagggcgtgccCctcctcggaacacaacagta	12	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87376966	A	A	87376966	1	1	145	0	1	0	0	0	0	0	0	0	13508	638	22	2		2	RMND5A	2	87376966	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	6545662	87376966	155822407	252	124953											
ANKRD23	200539	broad.mit.edu	37	chr2	97505936	97505936	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagcgtctgctcccgtgttCccgacaggcccccaaagcac	9	18	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97505936	T	T	97505936	1	4	145	0	1	0	0	0	0	0	0	0	652	870	30	4		4	ANKRD23	2	97505936	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	10128970	97505936	145693437	253	124954											
VWA3B	200403	broad.mit.edu	37	chr2	98809275	98809275	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatagcgcagctctgtcctCtgcagatgcatcgttaagtt	9	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98809275	T	T	98809275	1	4	145	0	1	0	0	0	0	0	0	0	17368	928	32	4		4	VWA3B	2	98809275	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1303339	98809275	144390098	254	124955											
UNC50	25972	broad.mit.edu	37	chr2	99226378	99226378	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgaatttgctgcctggcaGatgctctacctgttcacatc	8	11	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99226378	A	A	99226378	2	1	145	1	0	0	0	0	0	0	0	1	17116	933	33	4		4	UNC50	2	99226378	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	417103	99226378	143972995	255	124956											
AFF3	3899	broad.mit.edu	37	chr2	100210271	100210271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctccggggggaccaccaCgctcgtccccagcgcgtccg	15	18	0	0	rs144010569		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100210271	A	A	100210271	3	1	145	1	0	0	0	0	1	0	0	0	358	536	19	3	1872	3	AFF3	2	100210271	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	983893	100210271	142989102	256	124957											
MAP4K4	9448	broad.mit.edu	37	chr2	102490092	102490092	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagttgtattaataacatTgaaatttacattgcagactc	6	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102490092	C	C	102490092	1	2	145	0	1	0	0	0	0	0	0	0	9354	1827	63	5		5	MAP4K4	2	102490092	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2279821	102490092	140709281	257	124958											
IL1R2	7850	broad.mit.edu	37	chr2	102644669	102644669	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactgttcagctcctgatgtGactctgttcttcccacagcc	8	14	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102644669	A	A	102644669	1	1	145	0	1	0	0	0	0	0	0	0	7729	1305	45	4		4	IL1R2	2	102644669	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	154577	102644669	140554704	258	124959											
SULT1C3	442038	broad.mit.edu	37	chr2	108881548	108881548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtaatgtttcattctcCattatttattctttccagca	3	10	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108881548	A	A	108881548	1	1	145	0	1	0	0	0	0	0	0	0	15496	609	21	2		2	SULT1C3	2	108881548	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	6236879	108881548	134317825	259	124960											
ACOXL	55289	broad.mit.edu	37	chr2	111850588	111850588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactttgtacatcagccctGgtctccttgctttcttagaa	6	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111850588	T	T	111850588	1	4	145	0	1	0	0	0	0	0	0	0	161	1363	47	2		2	ACOXL	2	111850588	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2969040	111850588	131348785	260	124961											
POLR1B	84172	broad.mit.edu	37	chr2	113304529	113304529	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacataagatttggaagaGtcttagagaaaaaatgcctt	8	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113304529	A	A	113304529	1	1	145	0	1	0	0	0	0	0	0	0	12305	1044	36	4		4	POLR1B	2	113304529	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1453941	113304529	129894844	261	124962											
DPP10	57628	broad.mit.edu	37	chr2	116226355	116226355	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttgctgctactcaggctGaagttgcagactggtctcaa	11	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116226355	T	T	116226355	1	4	145	0	1	0	0	0	0	0	0	0	4767	1305	45	3		3	DPP10	2	116226355	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2921826	116226355	126973018	262	124963											
CNTNAP5	129684	broad.mit.edu	37	chr2	125281818	125281818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggctgggaaatgagcCccctctctctaagtcttctg	10	13	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125281818	A	A	125281818	1	1	145	0	1	0	0	0	0	0	0	0	3682	638	22	2		2	CNTNAP5	2	125281818	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	9055463	125281818	117917555	263	124964											
CYP27C1	339761	broad.mit.edu	37	chr2	127961198	127961198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacttacactgacattctgGgaaagaattcaaggaacctc	7	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127961198	T	T	127961198	1	4	145	0	1	0	0	0	0	0	0	0	4193	1247	43	2		2	CYP27C1	2	127961198	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2679380	127961198	115238175	264	124965											
MAP3K2	10746	broad.mit.edu	37	chr2	128072409	128072409	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacgggtgtatttcctagtCacattctcagtaagagcgcc	10	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128072409	A	A	128072409	2	1	145	1	0	0	0	0	0	0	0	1	9342	813	29	3		3	MAP3K2	2	128072409	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	111211	128072409	115126964	265	124966											
PROC	5624	broad.mit.edu	37	chr2	128179008	128179008	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggccaaggaaattttcCaaaatgtggatgacacagta	11	6	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128179008	T	T	128179008	4	4	145	1	0	0	0	0	0	1	0	0	12651	595	21	4	226	4	PROC	2	128179008	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	106599	128179008	115020365	266	124967											
MYO7B	4648	broad.mit.edu	37	chr2	128339977	128339977	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaaatgtgcggagggccatCggcctcctggacatatttgg	13	9	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128339977	G	G	128339977	3	3	145	1	0	0	0	0	1	0	0	0	10177	874	31	4	1341	4	MYO7B	2	128339977	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	160969	128339977	114859396	267	124968											
PLEKHB2	55041	broad.mit.edu	37	chr2	131948924	131948924	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcacactttacctgtccttAggagtcaaaaaacttgctga	7	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131948924	G	G	131948924	1	3	145	0	1	0	0	0	0	0	0	0	12160	435	15	5		5	PLEKHB2	2	131948924	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3608947	131948924	111250449	268	124969											
TUBA3D	113457	broad.mit.edu	37	chr2	132233832	132233832	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagacgaagttggcctcgGgtggacagagggacgttgtt	18	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132233832	A	A	132233832	1	1	145	0	1	0	0	0	0	0	0	0	16873	1247	43	4		4	TUBA3D	2	132233832	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	284908	132233832	110965541	269	124970											
CCDC74A	90557	broad.mit.edu	37	chr2	132287351	132287351	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgcccacctggctgcaCtggcccctgtatgccaaccc	8	19	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132287351	T	T	132287351	1	4	145	0	1	0	0	0	0	0	0	0	2875	580	20	4		4	CCDC74A	2	132287351	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	53519	132287351	110912022	270	124971											
NCKAP5	344148	broad.mit.edu	37	chr2	133721194	133721194	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catattagtctgggagaactCaaaagggaagatttatactc	9	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133721194	A	A	133721194	1	1	145	0	1	0	0	0	0	0	0	0	10318	841	29	3		3	NCKAP5	2	133721194	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1433843	133721194	109478179	271	124972											
NCKAP5	344148	broad.mit.edu	37	chr2	133721292	133721292	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattgcttcatttcttaCctctagagctttcaatctct	3	10	5	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133721292	A	A	133721292	5	1	145	1	0	0	0	0	0	0	1	0	10318	521	18	3	5201	3	NCKAP5	2	133721292	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	98	133721292	109478081	272	124973											
YSK4	80122	broad.mit.edu	37	chr2	135744471	135744471	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatagattccaggtccattAgcagttgaattgatttcttt	7	7	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135744471	T	T	135744471	2	4	145	1	0	0	0	0	0	0	0	1	17622	407	15	5		5	YSK4	2	135744471	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	2023179	135744471	107454902	273	124974											
LCT	3938	broad.mit.edu	37	chr2	136575357	136575357	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccagcgtcgcttggccctCagtggtgttcaggggcctgc	14	14	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136575357	T	T	136575357	3	4	145	1	0	0	0	0	1	0	0	0	8765	835	29	4	4570	4	LCT	2	136575357	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	830886	136575357	106624016	274	124975											
LRP1B	53353	broad.mit.edu	37	chr2	141115561	141115561	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcacctattctgcatccTtgctcatctgaaccatctcc	4	16	5	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141115561	C	C	141115561	2	2	145	1	0	0	0	0	0	0	0	1	9042	1606	56	5		5	LRP1B	2	141115561	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	4540204	141115561	102083812	275	124976											
LRP1B	53353	broad.mit.edu	37	chr2	141819801	141819801	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccatccatgtcacatctcTccactttggcgacattcccg	5	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141819801	C	C	141819801	3	2	145	1	0	0	0	0	1	0	0	0	9042	1551	54	5	13080	5	LRP1B	2	141819801	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	704240	141819801	101379572	276	124977											
LRP1B	53353	broad.mit.edu	37	chr2	141986830	141986830	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatctggatacatttgagttGatttgaagattctcttgatt	8	4	2	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141986830	C	C	141986830	3	2	145	1	0	0	0	0	1	0	0	0	9042	1299	45	4	13371	4	LRP1B	2	141986830	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	167029	141986830	101212543	277	124978											
ZEB2	9839	broad.mit.edu	37	chr2	145161404	145161404	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaatgccatgaaaaattaAtaatgattgccaatcaaagc	5	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145161404	G	G	145161404	1	3	145	0	1	0	0	0	0	0	0	0	17750	116	4	5		5	ZEB2	2	145161404	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3174574	145161404	98037969	278	124979											
NEB	4703	broad.mit.edu	37	chr2	152522680	152522680	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagagtgtagtggtggtatGactgtctgtagttggcgttg	18	3	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152522680	A	A	152522680	3	1	145	1	0	0	0	0	1	0	0	0	10397	1294	45	4	21299	4	NEB	2	152522680	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	7361276	152522680	90676693	279	124980											
BAZ2B	29994	broad.mit.edu	37	chr2	160285637	160285637	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctattaattgtagagaatGagaaatcaagtatacatcaa	6	4	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160285637	A	A	160285637	1	1	145	0	1	0	0	0	0	0	0	0	1337	1305	45	4		4	BAZ2B	2	160285637	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	7762957	160285637	82913736	280	124981											
BAZ2B	29994	broad.mit.edu	37	chr2	160303412	160303412	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcccatggaacttgaagCagtagtggatagtacagatg	12	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160303412	T	T	160303412	3	4	145	1	0	0	0	0	1	0	0	0	1337	710	25	4	6057	4	BAZ2B	2	160303412	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	17775	160303412	82895961	281	124982											
SCN3A	6328	broad.mit.edu	37	chr2	165970489	165970489	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttaatacatcctaaaaatCaaatatagttaattaaaaaa	1	4	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165970489	G	G	165970489	1	3	145	0	1	0	0	0	0	0	0	0	14031	841	29	4		4	SCN3A	2	165970489	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5667077	165970489	77228884	282	124983											
SCN1A	6323	broad.mit.edu	37	chr2	166852589	166852589	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcattgcattatagtatttCttctgttcttctgtcataaa	4	7	6	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166852589	T	T	166852589	2	4	145	1	0	0	0	0	0	0	0	1	14027	912	32	4		4	SCN1A	2	166852589	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	882100	166852589	76346784	283	124984											
SCN9A	6335	broad.mit.edu	37	chr2	167142778	167142778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcccgagttctcttacCctaaaataagacatttttct	3	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167142778	A	A	167142778	1	1	145	0	1	0	0	0	0	0	0	0	14038	638	22	2		2	SCN9A	2	167142778	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	290189	167142778	76056595	284	124985											
XIRP2	129446	broad.mit.edu	37	chr2	168105192	168105192	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccaaacccaaacttccCaagcatataaaagataataa	3	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168105192	A	A	168105192	2	1	145	1	0	0	0	0	0	0	0	1	17557	581	21	2		2	XIRP2	2	168105192	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	962414	168105192	75094181	285	124986											
ABCB11	8647	broad.mit.edu	37	chr2	169780348	169780348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtctgcaaagagaagatGgaaagttgatgcaaagatgc	12	6	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169780348	T	T	169780348	1	4	145	0	1	0	0	0	0	0	0	0	42	1363	47	2		2	ABCB11	2	169780348	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1675156	169780348	73419025	286	124987											
ABCB11	8647	broad.mit.edu	37	chr2	169830280	169830280	+	Frame_Shift_Del	DEL	C	-	-													gttgcagtgctgtactttttCcagctccactgggtcctacc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169830280	-	-	169830280	7	5	145	1	0	1	0	1	0	0	0	0	42	855	30	0	2650	0	ABCB11	2	169830280	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	49932	169830280	73369093	287	124988											
LRP2	4036	broad.mit.edu	37	chr2	170048424	170048424	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggtgcaattctgattctCatcgtagccgtcagtacaat	8	11	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170048424	T	T	170048424	3	4	145	1	0	0	0	0	1	0	0	0	9043	835	29	4	5145	4	LRP2	2	170048424	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	218144	170048424	73150949	288	124989											
KBTBD10	10324	broad.mit.edu	37	chr2	170374795	170374795	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgttccatgtttggagtagCagtccataaaggcaaaattg	10	7	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170374795	T	T	170374795	3	4	145	1	0	0	0	0	1	0	0	0	8060	710	25	4	1486	4	KBTBD10	2	170374795	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	326371	170374795	72824578	289	124990											
PPIG	9360	broad.mit.edu	37	chr2	170493776	170493776	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatgtactctaaaagtcgtGatcataatagctcaaataac	6	7	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170493776	C	C	170493776	3	2	145	1	0	0	0	0	1	0	0	0	12425	1290	45	4	2054	4	PPIG	2	170493776	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	118981	170493776	72705597	290	124991											
RAPGEF4	11069	broad.mit.edu	37	chr2	173787054	173787054	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagctactctctctgcctatCttctaaaaattgttataagg	5	9	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173787054	G	G	173787054	1	3	145	0	1	0	0	0	0	0	0	0	13154	928	32	4		4	RAPGEF4	2	173787054	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3293278	173787054	69412319	291	124992											
RAPGEF4	11069	broad.mit.edu	37	chr2	173881122	173881122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcccggatgattgctgccCtcaaggagcaactgccagag	12	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173881122	A	A	173881122	3	1	145	1	0	0	0	0	1	0	0	0	13154	681	24	2	1945	2	RAPGEF4	2	173881122	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	94068	173881122	69318251	292	124993											
RAPGEF4	11069	broad.mit.edu	37	chr2	173891527	173891527	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgctacaatatggaaaCcacatgaccatttttttgca	6	8	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173891527	T	T	173891527	1	4	145	0	1	0	0	0	0	0	0	0	13154	522	18	4		4	RAPGEF4	2	173891527	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	10405	173891527	69307846	293	124994											
CDCA7	83879	broad.mit.edu	37	chr2	174231037	174231037	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttgtcatcaatgccgtcaGaagactattgataccaaaac	6	10	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174231037	A	A	174231037	2	1	145	1	0	0	0	0	0	0	0	1	3120	933	33	4		4	CDCA7	2	174231037	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	339510	174231037	68968336	294	124995											
SCRN3	79634	broad.mit.edu	37	chr2	175260535	175260535	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtcacttcgggtagcTgggaggccaggtgaggggcg	18	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175260535	G	G	175260535	1	3	145	0	1	0	0	0	0	0	0	0	14053	1595	55	5		5	SCRN3	2	175260535	5'UTR	SNP	T	TCGA-49-6743-01A-11D-1855-08	1029498	175260535	67938838	295	124996											
CHN1	1123	broad.mit.edu	37	chr2	175673684	175673684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgtaatgagtggaattgGcaaatccctgaagtacagtt	10	5	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175673684	T	T	175673684	3	4	145	1	0	0	0	0	1	0	0	0	3393	1203	42	3	340	3	CHN1	2	175673684	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	413149	175673684	67525689	296	124997											
HOXD1	3231	broad.mit.edu	37	chr2	177054863	177054863	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttctcagtcccaagagcCttcgtgaggccggtacttgg	11	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177054863	G	G	177054863	3	3	145	1	0	0	0	0	1	0	0	0	7385	681	24	4	986	4	HOXD1	2	177054863	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1381179	177054863	66144510	297	124998											
TTN	7273	broad.mit.edu	37	chr2	179407655	179407655	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggtcttctgaggcattgtaGaaagatcgattgttggcaac	12	6	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179407655	C	C	179407655	3	2	145	1	0	0	0	0	1	0	0	0	16861	942	33	4	11113	4	TTN	2	179407655	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2352792	179407655	63791718	298	124999											
TTN	7273	broad.mit.edu	37	chr2	179441371	179441371	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttgcagtcctgttacTttgcacctgagatcggaaac	8	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179441371	A	A	179441371	3	1	145	1	0	0	0	0	1	0	0	0	16861	1606	56	5	38531	5	TTN	2	179441371	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	33716	179441371	63758002	299	125000											
TTN	7273	broad.mit.edu	37	chr2	179475105	179475105	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttaatatctttgcatgGtccaggtaggcctattacaa	8	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179475105	A	A	179475105	3	1	145	1	0	0	0	0	1	0	0	0	16861	1261	44	4	56913	4	TTN	2	179475105	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	33734	179475105	63724268	300	125001											
TTN	7273	broad.mit.edu	37	chr2	179500674	179500674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataagcagaacgaaatctcCcaggaaagtactaacctact	6	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179500674	T	T	179500674	1	4	145	0	1	0	0	0	0	0	0	0	16861	638	22	4		4	TTN	2	179500674	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	25569	179500674	63698699	301	125002											
TTN	7273	broad.mit.edu	37	chr2	179616095	179616095	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttatgtcagatttactttCtaaatattcttcatcataca	2	8	6	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179616095	T	T	179616095	3	4	145	1	0	0	0	0	1	0	0	0	16861	922	32	4	99265	4	TTN	2	179616095	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	115421	179616095	63583278	302	125003											
TTN	7273	broad.mit.edu	37	chr2	179646079	179646079	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatctgtgagtggatctgtGgtataaaattcaatgaccct	9	6	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179646079	A	A	179646079	1	1	145	0	1	0	0	0	0	0	0	0	16861	1363	47	4		4	TTN	2	179646079	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	29984	179646079	63553294	303	125004											
TTN	7273	broad.mit.edu	37	chr2	179665039	179665039	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcttcccagggctgtgagAggtggcaagtggacgcttgg	16	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179665039	T	T	179665039	1	4	145	0	1	0	0	0	0	0	0	0	16861	319	11	5		5	TTN	2	179665039	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	18960	179665039	63534334	304	125005											
CCDC141	285025	broad.mit.edu	37	chr2	179736065	179736065	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaaaatagaaattcacCagcctgttacaattaatcag	4	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179736065	T	T	179736065	1	4	145	0	1	0	0	0	0	0	0	0	2801	609	21	4		4	CCDC141	2	179736065	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	71026	179736065	63463308	305	125006											
SSFA2	6744	broad.mit.edu	37	chr2	182794429	182794429	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtatttcttcaaccatAtattttaaaaagacgtacat	4	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182794429	C	C	182794429	1	2	145	0	1	0	0	0	0	0	0	0	15301	464	16	5		5	SSFA2	2	182794429	3'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	3058364	182794429	60404944	306	125007											
PDE1A	5136	broad.mit.edu	37	chr2	183070893	183070893	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcatgtgaccagaaaacatCctataattgaacagtgagaa	8	7	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183070893	T	T	183070893	1	4	145	0	1	0	0	0	0	0	0	0	11727	870	30	4		4	PDE1A	2	183070893	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	276464	183070893	60128480	307	125008											
PDE1A	5136	broad.mit.edu	37	chr2	183095846	183095846	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaatacatcgaaagaccAtttatcaacatcctgtagaa	6	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183095846	G	G	183095846	3	3	145	1	0	0	0	0	1	0	0	0	11727	217	8	5	1247	5	PDE1A	2	183095846	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	24953	183095846	60103527	308	125009											
HIBCH	26275	broad.mit.edu	37	chr2	191175545	191175545	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaatgtggaaaacaaTgagaacagtaatgtgggtag	12	3	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191175545	A	A	191175545	1	1	145	0	1	0	0	0	0	0	0	0	7167	1479	51	5		5	HIBCH	2	191175545	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	8079699	191175545	52023828	309	125010											
MYO1B	4430	broad.mit.edu	37	chr2	192278789	192278789	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttagtgttgggcaaccattCcaaggggcttacctggaaat	11	8	0	0	rs1140896		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192278789	G	G	192278789	3	3	145	1	0	0	0	0	1	0	0	0	10163	854	30	4	2995	4	MYO1B	2	192278789	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1103244	192278789	50920584	310	125011											
DNAH7	56171	broad.mit.edu	37	chr2	196866377	196866377	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaatttgtaaatacatatTggtgaactgaaccatactta	5	5	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196866377	G	G	196866377	1	3	145	0	1	0	0	0	0	0	0	0	4646	1827	63	5		5	DNAH7	2	196866377	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4587588	196866377	46332996	311	125012											
HECW2	57520	broad.mit.edu	37	chr2	197184360	197184360	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcgatagcatctaagtaAtcattgagtgaatcctgacg	9	7	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197184360	T	T	197184360	3	4	145	1	0	0	0	0	1	0	0	0	7110	98	4	5	3548	5	HECW2	2	197184360	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	317983	197184360	46015013	312	125013											
HECW2	57520	broad.mit.edu	37	chr2	197189755	197189755	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgatgatagtagaccgtctCtcctgcccgtggtgggcaca	12	12	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197189755	G	G	197189755	3	3	145	1	0	0	0	0	1	0	0	0	7110	912	32	4	4124	4	HECW2	2	197189755	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5395	197189755	46009618	313	125014											
CCDC150	284992	broad.mit.edu	37	chr2	197539093	197539093	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtattcgtttaacatgaaagCcaaccagaaagccagcctgg	9	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197539093	G	G	197539093	1	3	145	0	1	0	0	0	0	0	0	0	2811	754	26	4		4	CCDC150	2	197539093	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	349338	197539093	45660280	314	125015											
GTF3C3	9330	broad.mit.edu	37	chr2	197637761	197637761	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaatattccaatgaggaatCtacaagcaactcagcctctt	6	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197637761	G	G	197637761	3	3	145	1	0	0	0	0	1	0	0	0	6939	913	32	4	732	4	GTF3C3	2	197637761	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	98668	197637761	45561612	315	125016											
HSPD1	3329	broad.mit.edu	37	chr2	198363449	198363449	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctaaaaggtctacaccttGaagcattaaggctcgggcat	11	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198363449	T	T	198363449	3	4	145	1	0	0	0	0	1	0	0	0	7498	1299	45	3	1641	3	HSPD1	2	198363449	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	725688	198363449	44835924	316	125017											
SATB2	23314	broad.mit.edu	37	chr2	200137425	200137425	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagagaaaaaaatgaacaCtggactcatgattttacctt	7	6	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200137425	A	A	200137425	1	1	145	0	1	0	0	0	0	0	0	0	13966	580	20	3		3	SATB2	2	200137425	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1773976	200137425	43061948	317	125018											
SGOL2	151246	broad.mit.edu	37	chr2	201400787	201400787	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtctttattttacatgtgcaGaataagaagcttatagacat	7	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201400787	C	C	201400787	5	2	145	1	0	0	0	0	0	0	1	0	14330	956	33	4	319	4	SGOL2	2	201400787	Splice_Site	SNP	G	TCGA-49-6743-01A-11D-1855-08	1263362	201400787	41798586	318	125019											
SGOL2	151246	broad.mit.edu	37	chr2	201437658	201437658	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagtcacaaatgaatttcaAacagttgatcttctcatcaa	4	9	5	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201437658	T	T	201437658	3	4	145	1	0	0	0	0	1	0	0	0	14330	11	1	5	2611	5	SGOL2	2	201437658	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	36871	201437658	41761715	319	125020											
AOX1	316	broad.mit.edu	37	chr2	201477456	201477456	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagagagttatgcatctcatAtggaggcgttggtccagcca	12	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201477456	G	G	201477456	3	3	145	1	0	0	0	0	1	0	0	0	731	449	16	5	1442	5	AOX1	2	201477456	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	39798	201477456	41721917	320	125021											
ALS2	57679	broad.mit.edu	37	chr2	202580654	202580655	+	Intron	INS	-	T	T													taacatacaactgagaatgcINSttttttcgtgaccaaaactg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202580655	T	T	202580654	6	5	145	0	1	1	1	0	0	0	0	0	550	812	28	0		0	ALS2	2	202580654	Intron	INS	-	TCGA-49-6743-01A-11D-1855-08	1103198	202580654	40618719	321	125022											
NDUFS1	4719	broad.mit.edu	37	chr2	206988867	206988867	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatcactgcactacagttgtCcattaattatctgcggcaaa	7	10	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206988867	T	T	206988867	1	4	145	0	1	0	0	0	0	0	0	0	10386	870	30	4		4	NDUFS1	2	206988867	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	4408213	206988867	36210506	322	125023											
ADAM23	8745	broad.mit.edu	37	chr2	207407978	207407978	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggtttcttttgtgctagtGgcatgtttgaagatgatacc	12	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207407978	C	C	207407978	3	2	145	1	0	0	0	0	1	0	0	0	245	1362	47	4	680	4	ADAM23	2	207407978	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	419111	207407978	35791395	323	125024											
MAP2	4133	broad.mit.edu	37	chr2	210565126	210565126	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtattagctgtaacatcAgaataacttttgatattgtt	7	4	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210565126	T	T	210565126	1	4	145	0	1	0	0	0	0	0	0	0	9327	203	7	5		5	MAP2	2	210565126	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3157148	210565126	32634247	324	125025											
MYL1	4632	broad.mit.edu	37	chr2	211163028	211163028	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaatcaatctttctctcTctcacacacacacatactac	0	14	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211163028	C	C	211163028	1	2	145	0	1	0	0	0	0	0	0	0	10137	1566	54	5		5	MYL1	2	211163028	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	597902	211163028	32036345	325	125026											
ABCA12	26154	broad.mit.edu	37	chr2	215821468	215821468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgaaaatcgcaatgataCcaattgaaaacgctacaggc	7	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215821468	A	A	215821468	3	1	145	1	0	0	0	0	1	0	0	0	30	507	18	3	1683	3	ABCA12	2	215821468	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	4658440	215821468	27377905	326	125027											
ABCA12	26154	broad.mit.edu	37	chr2	215891755	215891755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcccttgtttggcattGgttgacttggacattgaaat	11	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215891755	T	T	215891755	1	4	145	0	1	0	0	0	0	0	0	0	30	1363	47	2		2	ABCA12	2	215891755	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	70287	215891755	27307618	327	125028											
FN1	2335	broad.mit.edu	37	chr2	216240284	216240284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatatacgcctcacatttGttttttgagttcatgaaact	5	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216240284	T	T	216240284	1	4	145	0	1	0	0	0	0	0	0	0	6020	1392	48	3		3	FN1	2	216240284	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	348529	216240284	26959089	328	125029											
TTLL4	9654	broad.mit.edu	37	chr2	219618204	219618204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtagggaaggggagaacCccatgatccatttagaggta	16	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219618204	A	A	219618204	1	1	145	0	1	0	0	0	0	0	0	0	16855	638	22	2		2	TTLL4	2	219618204	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3377920	219618204	23581169	329	125030											
SLC23A3	151295	broad.mit.edu	37	chr2	220032665	220032665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctacctgggtgaggcagCcaaatccatggtgccttggt	12	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220032665	A	A	220032665	3	1	145	1	0	0	0	0	1	0	0	0	14578	740	26	3	956	3	SLC23A3	2	220032665	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	414461	220032665	23166708	330	125031											
SPEG	10290	broad.mit.edu	37	chr2	220353803	220353803	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtggcaccctgtgagctCaggcatccccgactgttact	11	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220353803	G	G	220353803	4	3	145	1	0	0	0	0	0	1	0	0	15154	838	29	4	8327	4	SPEG	2	220353803	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	321138	220353803	22845570	331	125032											
COL4A4	1286	broad.mit.edu	37	chr2	228012221	228012221	+	5'UTR	DEL	A	-	-													gcaggcaagtcttagtacttAaaaaatattctgccagtctt							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	228012221	-	-	228012221	6	5	145	0	1	1	0	1	0	0	0	0	3725	377	13	0		0	COL4A4	2	228012221	5'UTR	DEL	A	TCGA-49-6743-01A-11D-1855-08	7658418	228012221	15187152	332	125033											
MFF	56947	broad.mit.edu	37	chr2	228220378	228220378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactattcatttgtatttctAtctcttatctgcaggtatgg	6	7	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228220378	G	G	228220378	1	3	145	0	1	0	0	0	0	0	0	0	9612	464	16	5		5	MFF	2	228220378	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	208157	228220378	14978995	333	125034											
SP140	11262	broad.mit.edu	37	chr2	231090527	231090527	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggaacggggcagtgaAaatcgaatcgggtgtgatcc	16	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231090527	T	T	231090527	1	4	145	0	1	0	0	0	0	0	0	0	15076	29	1	5		5	SP140	2	231090527	5'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	2870149	231090527	12108846	334	125035											
SP100	6672	broad.mit.edu	37	chr2	231313918	231313918	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctattcttgcccctttctgGaatgtgctgtggggttgcct	12	10	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231313918	T	T	231313918	1	4	145	0	1	0	0	0	0	0	0	0	15074	1189	41	3		3	SP100	2	231313918	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	223391	231313918	11885455	335	125036											
SP100	6672	broad.mit.edu	37	chr2	231359144	231359144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcaggaaaaaagagaagGcatagatctaaagtaaatgg	11	3	1	2	rs138814189	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231359144	T	T	231359144	3	4	145	1	0	0	0	0	1	0	0	0	15074	1194	42	3	1684	3	SP100	2	231359144	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	45226	231359144	11840229	336	125037											
PTMA	5757	broad.mit.edu	37	chr2	232576100	232576100	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggaagaggcagaaaatGgaagagacgcccctgctaac	13	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232576100	A	A	232576100	3	1	145	1	0	0	0	0	1	0	0	0	12872	1349	47	4	94	4	PTMA	2	232576100	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1216956	232576100	10623273	337	125038											
ALPPL2	251	broad.mit.edu	37	chr2	233272331	233272331	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtagacaagcatgtgccaGacagtggagccacagccacg	13	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233272331	A	A	233272331	3	1	145	1	0	0	0	0	1	0	0	0	549	942	33	4	342	4	ALPPL2	2	233272331	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	696231	233272331	9927042	338	125039											
ECEL1	9427	broad.mit.edu	37	chr2	233346689	233346690	+	Intron	DNP	GG	TA	TA													ggccacagaggcatccgtgcGgtccaggggcacatgtgcct							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	233346690	TA	TA	233346689	1	4	145	0	1	0	0	0	0	0	0	0	4931	1131	39	1		1	ECEL1	2	233346689	Intron	DNP	GG	TCGA-49-6743-01A-11D-1855-08	74358	233346689	9852684	339	125040											
TRPM8	79054	broad.mit.edu	37	chr2	234846213	234846213	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagtgacctgggctaccTtgatttacttggaattgtct	9	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234846213	A	A	234846213	1	1	145	0	1	0	0	0	0	0	0	0	16717	1624	56	5		5	TRPM8	2	234846213	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1499524	234846213	8353160	340	125041											
SH3BP4	23677	broad.mit.edu	37	chr2	235949508	235949508	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccggccttgccctcaccatCtgttttctttgtgttttgca	8	13	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235949508	G	G	235949508	1	3	145	0	1	0	0	0	0	0	0	0	14359	928	32	4		4	SH3BP4	2	235949508	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1103295	235949508	7249865	341	125042											
COPS8	10920	broad.mit.edu	37	chr2	238004453	238004453	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccggatctttatgtgtaatAtacttttttaggcatattag	7	5	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238004453	T	T	238004453	1	4	145	0	1	0	0	0	0	0	0	0	3772	464	16	5		5	COPS8	2	238004453	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2054945	238004453	5194920	342	125043											
OR6B2	389090	broad.mit.edu	37	chr2	240969745	240969745	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccaggacaaagaggtaGgtgagcaggaagaggaggaa	16	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240969745	T	T	240969745	2	4	145	1	0	0	0	0	0	0	0	1	11282	987	35	2		2	OR6B2	2	240969745	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2965292	240969745	2229628	343	125044											
PRR21	643905	broad.mit.edu	37	chr2	240984465	240984465	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaataaatgcggtactAcaataatgcaaacagtcaaa	5	6	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240984465	G	G	240984465	1	3	145	0	1	0	0	0	0	0	0	0	12698	406	14	5		5	PRR21	2	240984465	5'Flank	SNP	A	TCGA-49-6743-01A-11D-1855-08	14720	240984465	2214908	344	125045											
OR6B3	150681	broad.mit.edu	37	chr2	240984557	240984557	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaaagcctcccctctacGgcgcagctcgtcaagccgaa	9	16	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240984557	T	T	240984557	2	4	145	1	0	0	0	0	0	0	0	1	11283	1103	39	1		1	OR6B3	2	240984557	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	92	240984557	2214816	345	125046											
ANKMY1	51281	broad.mit.edu	37	chr2	241447120	241447120	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcacaacctgaacatacaCagacagtctcatcagtggcc	6	14	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241447120	G	G	241447120	1	3	145	0	1	0	0	0	0	0	0	0	634	493	17	4		4	ANKMY1	2	241447120	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	462563	241447120	1752253	346	125047											
CAPN10	11132	broad.mit.edu	37	chr2	241537349	241537349	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcacccccactgctgctGcaggagccgctgctgagctg	13	16	0	1	rs139512421	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241537349	T	T	241537349	2	4	145	1	0	0	0	0	0	0	0	1	2649	1306	46	3		3	CAPN10	2	241537349	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	90229	241537349	1662024	347	125048											
HDLBP	3069	broad.mit.edu	37	chr2	242179037	242179037	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggtcctcaatgatctcctGaatgcgtttcttggctgcct	9	12	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242179037	A	A	242179037	4	1	145	1	0	0	0	0	0	1	0	0	7092	1299	45	4	1256	4	HDLBP	2	242179037	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	641688	242179037	1020336	348	125049											
FARP2	9855	broad.mit.edu	37	chr2	242422954	242422954	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatgttttttctggtaggTtctctccccactcaagctgt	9	10	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242422954	G	G	242422954	1	3	145	0	1	0	0	0	0	0	0	0	5734	1740	60	5		5	FARP2	2	242422954	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	243917	242422954	776419	349	125050											
STK25	10494	broad.mit.edu	37	chr2	242441097	242441097	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcggtcgagcttggtgaaGagctcctcagggtccactcg	14	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242441097	C	C	242441097	2	2	145	1	0	0	0	0	0	0	0	1	15412	929	33	4		4	STK25	2	242441097	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	18143	242441097	758276	350	125051											
D2HGDH	728294	broad.mit.edu	37	chr2	242684449	242684449	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgcttccaaaggaatcagGaatccaggacctggccttcc	9	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242684449	A	A	242684449	1	1	145	0	1	0	0	0	0	0	0	0	4246	1189	41	4		4	D2HGDH	2	242684449	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	243352	242684449	514924	351	125052											
D2HGDH	728294	broad.mit.edu	37	chr2	242695292	242695292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctgagggaaaggatcaCagaggcgctgagccgggatg	18	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242695292	A	A	242695292	3	1	145	1	0	0	0	0	1	0	0	0	4246	478	17	3	1199	3	D2HGDH	2	242695292	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	10843	242695292	504081	352	125053											
CNTN4	152330	broad.mit.edu	37	chr3	3080535	3080535	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagagtactcactgaaagtGagtcacctctgccaggcaac	9	12	4	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3080535	T	T	3080535	1	4	145	0	1	0	0	0	0	0	0	0	3675	1305	45	3		3	CNTN4	3	3080535	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08		3080535	194941895	353	125054											
OXTR	5021	broad.mit.edu	37	chr3	8809147	8809147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgccgcgccctctggcgCctcggccgccgccgctgcag	14	21	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8809147	A	A	8809147	3	1	145	1	0	0	0	0	1	0	0	0	11432	739	26	3	450	3	OXTR	3	8809147	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5728612	8809147	189213283	354	125055											
OGG1	4968	broad.mit.edu	37	chr3	9800995	9800995	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaccctctctggaatagaGaaggtgttgggagtgtttgt	16	5	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9800995	A	A	9800995	1	1	145	0	1	0	0	0	0	0	0	0	10940	957	33	4		4	OGG1	3	9800995	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	991848	9800995	188221435	355	125056											
DAZL	1618	broad.mit.edu	37	chr3	16638884	16638884	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattcctctaagtttggattTttttgaccagaaagtgtatc	8	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16638884	A	A	16638884	1	1	145	0	1	0	0	0	0	0	0	0	4279	1856	64	5		5	DAZL	3	16638884	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	6837889	16638884	181383546	356	125057											
SATB1	6304	broad.mit.edu	37	chr3	18458361	18458361	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaacaaagaatgctaagCaatttttccaaccccacgta	6	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18458361	T	T	18458361	1	4	145	0	1	0	0	0	0	0	0	0	13965	725	25	4		4	SATB1	3	18458361	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1819477	18458361	179564069	357	125058											
KAT2B	8850	broad.mit.edu	37	chr3	20113961	20113961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgccctaggtgagttccTaaatcttcaaggaaagtata	8	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20113961	A	A	20113961	1	1	145	0	1	0	0	0	0	0	0	0	8052	1537	53	5		5	KAT2B	3	20113961	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1655600	20113961	177908469	358	125059											
KAT2B	8850	broad.mit.edu	37	chr3	20167364	20167364	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgtcttgagagaatagctCtgtgtaattttttcctgtct	8	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20167364	T	T	20167364	1	4	145	0	1	0	0	0	0	0	0	0	8052	928	32	4		4	KAT2B	3	20167364	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	53403	20167364	177855066	359	125060											
RPL15	6138	broad.mit.edu	37	chr3	23960103	23960103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagttatattgaatactGcctggggatggtgggagaga	15	4	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23960103	T	T	23960103	1	4	145	0	1	0	0	0	0	0	0	0	13673	1334	46	3		3	RPL15	3	23960103	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3792739	23960103	174062327	360	125061											
GPD1L	23171	broad.mit.edu	37	chr3	32180188	32180188	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagatcactgggagagtgcCcaagaaagcgctgggaatca	14	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32180188	T	T	32180188	3	4	145	1	0	0	0	0	1	0	0	0	6670	623	22	4	345	4	GPD1L	3	32180188	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	8220085	32180188	165842242	361	125062											
ZDHHC3	51304	broad.mit.edu	37	chr3	44986847	44986847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcagctctaacattctacAgtggggatagttatttgaaa	8	6	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44986847	T	T	44986847	1	4	145	0	1	0	0	0	0	0	0	0	17742	203	7	5		5	ZDHHC3	3	44986847	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	12806659	44986847	153035583	362	125063											
LTF	4057	broad.mit.edu	37	chr3	46480816	46480816	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaacacctgtttcaggcGttccaccttatccatccgag	8	14	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46480816	A	A	46480816	3	1	145	1	0	0	0	0	1	0	0	0	9166	1145	40	4	265	4	LTF	3	46480816	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1493969	46480816	151541614	363	125064											
KLHL18	23276	broad.mit.edu	37	chr3	47371646	47371646	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatctgaggagcaggtatgtGagcccagtagcagtctgtgc	14	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47371646	T	T	47371646	1	4	145	0	1	0	0	0	0	0	0	0	8444	1305	45	3		3	KLHL18	3	47371646	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	890830	47371646	150650784	364	125065											
QARS	5859	broad.mit.edu	37	chr3	49135440	49135440	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacctttccctgatggctGtctggatccacggagaaata	10	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49135440	A	A	49135440	2	1	145	1	0	0	0	0	0	0	0	1	12979	1368	48	4		4	QARS	3	49135440	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1763794	49135440	148886990	365	125066											
DOCK3	1795	broad.mit.edu	37	chr3	51400009	51400009	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtcaccaacgtctctgttCtgtcctcgtcccaggcaagc	8	16	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51400009	T	T	51400009	2	4	145	1	0	0	0	0	0	0	0	1	4728	912	32	4		4	DOCK3	3	51400009	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	2264569	51400009	146622421	366	125067											
DNAH1	25981	broad.mit.edu	37	chr3	52366232	52366232	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcgctgaggacccttgcAtgttcgcacaacgtgtggtc	12	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52366232	G	G	52366232	3	3	145	1	0	0	0	0	1	0	0	0	4637	217	8	5	1134	5	DNAH1	3	52366232	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	966223	52366232	145656198	367	125068											
CACNA2D3	55799	broad.mit.edu	37	chr3	54921936	54921936	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccatgagtgcctctcatgCccctcttccagccctgctga	8	18	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54921936	T	T	54921936	1	4	145	0	1	0	0	0	0	0	0	0	2576	754	26	4		4	CACNA2D3	3	54921936	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2555704	54921936	143100494	368	125069											
DNASE1L3	1776	broad.mit.edu	37	chr3	58178974	58178974	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccatgcccagctaatttTtttgaatttttcatagagat	5	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58178974	A	A	58178974	1	1	145	0	1	0	0	0	0	0	0	0	4703	1856	64	5		5	DNASE1L3	3	58178974	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	3257038	58178974	139843456	369	125070											
CADPS	8618	broad.mit.edu	37	chr3	62423881	62423881	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcggccacgtccatcccGggtttctgtaaagaaacagg	12	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62423881	T	T	62423881	2	4	145	1	0	0	0	0	0	0	0	1	2596	1103	39	1		1	CADPS	3	62423881	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	4244907	62423881	135598549	370	125071											
CNTN3	5067	broad.mit.edu	37	chr3	74548836	74548836	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtgatggattgcctctTgcttcacaatgcaaagttat	10	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74548836	G	G	74548836	2	3	145	1	0	0	0	0	0	0	0	1	3674	1799	63	5		5	CNTN3	3	74548836	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	12124955	74548836	123473594	371	125072											
CADM2	253559	broad.mit.edu	37	chr3	85985158	85985158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcatgaaccatgtcttcAttaaggtctatggaagattg	8	8	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85985158	G	G	85985158	1	3	145	0	1	0	0	0	0	0	0	0	2593	232	8	5		5	CADM2	3	85985158	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	11436322	85985158	112037272	372	125073											
CADM2	253559	broad.mit.edu	37	chr3	86028223	86028223	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgttaaagttaaacctcaAtaagttatatgtatttataa	4	4	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86028223	G	G	86028223	1	3	145	0	1	0	0	0	0	0	0	0	2593	116	4	5		5	CADM2	3	86028223	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	43065	86028223	111994207	373	125074											
OR5H1	26341	broad.mit.edu	37	chr3	97852089	97852089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttactgtgacactatccCattgtctaagatttcttgta	5	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852089	A	A	97852089	3	1	145	1	0	0	0	0	1	0	0	0	11253	594	21	2	550	2	OR5H1	3	97852089	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	11823866	97852089	100170341	374	125075											
RG9MTD1	54931	broad.mit.edu	37	chr3	101283965	101283965	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtaccagaacacatcactGaagaagagctcaaaaccctt	6	11	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101283965	A	A	101283965	3	1	145	1	0	0	0	0	1	0	0	0	13379	1291	45	4	342	4	RG9MTD1	3	101283965	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3431876	101283965	96738465	375	125076											
CBLB	868	broad.mit.edu	37	chr3	105400710	105400710	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaggagaatactttccaaTtaaaagtaacttgagaggta	8	4	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105400710	A	A	105400710	1	1	145	0	1	0	0	0	0	0	0	0	2727	1508	52	5		5	CBLB	3	105400710	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4116745	105400710	92621720	376	125077											
HHLA2	11148	broad.mit.edu	37	chr3	108095379	108095379	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgagcgctgtcccagtgCacccgataatggcgaagaaa	13	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108095379	T	T	108095379	3	4	145	1	0	0	0	0	1	0	0	0	7162	710	25	4	1225	4	HHLA2	3	108095379	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2694669	108095379	89927051	377	125078											
DZIP3	9666	broad.mit.edu	37	chr3	108380824	108380824	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactatcagtgtgaagtaaGtatttttgccattagatctg	9	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108380824	T	T	108380824	1	4	145	0	1	0	0	0	0	0	0	0	4905	1044	36	3		3	DZIP3	3	108380824	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	285445	108380824	89641606	378	125079											
GUCA1C	9626	broad.mit.edu	37	chr3	108634989	108634989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attaccatcattgtttatatCgatcttatggaacaccaagt	5	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108634989	A	A	108634989	3	1	145	1	0	0	0	0	1	0	0	0	6955	884	31	3	210	3	GUCA1C	3	108634989	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	254165	108634989	89387441	379	125080											
DPPA2	151871	broad.mit.edu	37	chr3	109028005	109028005	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcagcagatattcacccAagtgtactaaccttgccatt	6	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109028005	G	G	109028005	1	3	145	0	1	0	0	0	0	0	0	0	4774	145	5	5		5	DPPA2	3	109028005	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	393016	109028005	88994425	380	125081											
DPPA2	151871	broad.mit.edu	37	chr3	109031580	109031580	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgattttcatttgatgcggTacaactaaactgcttgcttt	7	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109031580	A	A	109031580	1	1	145	0	1	0	0	0	0	0	0	0	4774	1653	57	5		5	DPPA2	3	109031580	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	3575	109031580	88990850	381	125082											
ATG3	64422	broad.mit.edu	37	chr3	112277264	112277264	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtttccttaaactttgattCctaaaaaaagcagaaagaaa	5	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112277264	G	G	112277264	3	3	145	1	0	0	0	0	1	0	0	0	1099	869	30	4	915	4	ATG3	3	112277264	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3245684	112277264	85745166	382	125083											
CCDC52	152185	broad.mit.edu	37	chr3	113172643	113172643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcccatgtgagagactctCcatctctgagtgaagagacg	10	11	3	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113172643	A	A	113172643	3	1	145	1	0	0	0	0	1	0	0	0	2850	856	30	3	775	3	CCDC52	3	113172643	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	895379	113172643	84849787	383	125084											
NAA50	80218	broad.mit.edu	37	chr3	113442765	113442765	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctagggttcaagaacaaaaaGaaagaaaagaagggaggaca	12	4	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113442765	C	C	113442765	1	2	145	0	1	0	0	0	0	0	0	0	10220	957	33	4		4	NAA50	3	113442765	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	270122	113442765	84579665	384	125085											
KIAA1407	57577	broad.mit.edu	37	chr3	113775342	113775342	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgagcccgaacctcggccAaagctgcagcaaccgccctt	9	17	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113775342	G	G	113775342	1	3	145	0	1	0	0	0	0	0	0	0	8299	145	5	5		5	KIAA1407	3	113775342	5'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	332577	113775342	84247088	385	125086											
LSAMP	4045	broad.mit.edu	37	chr3	115560780	115560780	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctcctcagtgacgttggtCaccgtcagggaagactggcc	13	12	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115560780	T	T	115560780	2	4	145	1	0	0	0	0	0	0	0	1	9135	813	29	4		4	LSAMP	3	115560780	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1785438	115560780	82461650	386	125087											
ARHGAP31	57514	broad.mit.edu	37	chr3	119133227	119133227	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaaattgaggacagatctCtacatagaccagctgaagtc	10	8	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119133227	A	A	119133227	2	1	145	1	0	0	0	0	0	0	0	1	882	900	32	3		3	ARHGAP31	3	119133227	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	3572447	119133227	78889203	387	125088											
POPDC2	64091	broad.mit.edu	37	chr3	119373414	119373414	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagagtccatgaactggtAtggaaagatgtagtgcagaa	14	4	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119373414	G	G	119373414	3	3	145	1	0	0	0	0	1	0	0	0	12350	449	16	5	568	5	POPDC2	3	119373414	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	240187	119373414	78649016	388	125089											
ARGFX	503582	broad.mit.edu	37	chr3	121304838	121304838	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcctcctccaataacagaCcacaatctccccctcttccc	2	20	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121304838	T	T	121304838	1	4	145	0	1	0	0	0	0	0	0	0	861	522	18	4		4	ARGFX	3	121304838	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1931424	121304838	76717592	389	125090											
HCLS1	3059	broad.mit.edu	37	chr3	121363834	121363834	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgaccttaaaaaaataaaTacagatatggagtgggatgt	9	3	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121363834	C	C	121363834	1	2	145	0	1	0	0	0	0	0	0	0	7061	1421	49	5		5	HCLS1	3	121363834	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	58996	121363834	76658596	390	125091											
GOLGB1	2804	broad.mit.edu	37	chr3	121396161	121396161	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattgcactttgagaggctGagtctgggaggaagaagacc	15	6	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121396161	A	A	121396161	4	1	145	1	0	0	0	0	0	1	0	0	6629	1299	45	4	812	4	GOLGB1	3	121396161	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	32327	121396161	76626269	391	125092											
PARP14	54625	broad.mit.edu	37	chr3	122446683	122446683	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaggatccagaatccagatCtctggaatagctaccaggca	10	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122446683	A	A	122446683	3	1	145	1	0	0	0	0	1	0	0	0	11552	913	32	3	5028	3	PARP14	3	122446683	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1050522	122446683	75575747	392	125093											
ROPN1	54763	broad.mit.edu	37	chr3	123695688	123695688	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactgtccctacattctcctCaatgctgcagcagggccctt	7	16	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123695688	G	G	123695688	1	3	145	0	1	0	0	0	0	0	0	0	13634	841	29	4		4	ROPN1	3	123695688	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1249005	123695688	74326742	393	125094											
SLC41A3	54946	broad.mit.edu	37	chr3	125727528	125727528	+	Intron	DEL	G	-	-													gacaagagatcaagcctgctGgctgactacacagctgcgca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125727528	-	-	125727528	6	5	145	0	1	1	0	1	0	0	0	0	14745	1363	47	0		0	SLC41A3	3	125727528	Intron	DEL	G	TCGA-49-6743-01A-11D-1855-08	2031840	125727528	72294902	394	125095											
PLXNA1	5361	broad.mit.edu	37	chr3	126731065	126731065	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccggttatcctcacggccCtgggtcctggcgtgtgcttg	15	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126731065	T	T	126731065	1	4	145	0	1	0	0	0	0	0	0	0	12214	696	24	4		4	PLXNA1	3	126731065	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1003537	126731065	71291365	395	125096											
KBTBD12	166348	broad.mit.edu	37	chr3	127646501	127646501	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttgtcctccaattggaAgaaccatatctcattatttt	4	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127646501	G	G	127646501	1	3	145	0	1	0	0	0	0	0	0	0	8061	87	3	5		5	KBTBD12	3	127646501	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	915436	127646501	70375929	396	125097											
RUVBL1	8607	broad.mit.edu	37	chr3	127831683	127831683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaggcttcggtgcacagGcttcaggaagtgagaccaac	13	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127831683	T	T	127831683	1	4	145	0	1	0	0	0	0	0	0	0	13863	1218	42	3		3	RUVBL1	3	127831683	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	185182	127831683	70190747	397	125098											
RPN1	6184	broad.mit.edu	37	chr3	128356927	128356927	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatcaagagcaactgggagCttgactgtgaagaatctccc	12	9	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128356927	T	T	128356927	2	4	145	1	0	0	0	0	0	0	0	1	13718	796	28	4		4	RPN1	3	128356927	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	525244	128356927	69665503	398	125099											
RAB7A	7879	broad.mit.edu	37	chr3	128483660	128483660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcttcatcagtttctcGgcatgttccctctcctcatg	7	14	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128483660	T	T	128483660	1	4	145	0	1	0	0	0	0	0	0	0	13062	1131	39	1		1	RAB7A	3	128483660	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	126733	128483660	69538770	399	125100											
GP9	2815	broad.mit.edu	37	chr3	128780876	128780876	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcctcacctatctgcgcctCtggctggaggaccgcacgcc	11	17	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128780876	G	G	128780876	2	3	145	1	0	0	0	0	0	0	0	1	6650	900	32	4		4	GP9	3	128780876	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	297216	128780876	69241554	400	125101											
COL6A6	131873	broad.mit.edu	37	chr3	130284021	130284021	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagacaaaagtgataaattCactgagcatgggcataaata	9	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130284021	G	G	130284021	4	3	145	1	0	0	0	0	0	1	0	0	3735	838	29	4	855	4	COL6A6	3	130284021	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1503145	130284021	67738409	401	125102											
CPNE4	131034	broad.mit.edu	37	chr3	131963141	131963141	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagagagttaacaatacTttttaacccggtacatccaa	6	8	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131963141	C	C	131963141	1	2	145	0	1	0	0	0	0	0	0	0	3846	1624	56	5		5	CPNE4	3	131963141	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1679120	131963141	66059289	402	125103											
DNAJC13	23317	broad.mit.edu	37	chr3	132185919	132185919	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaccataacatccagcattAaccttataaaatagatagaa	4	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132185919	C	C	132185919	1	2	145	0	1	0	0	0	0	0	0	0	4672	377	13	5		5	DNAJC13	3	132185919	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	222778	132185919	65836511	403	125104											
EPHB1	2047	broad.mit.edu	37	chr3	134898724	134898724	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccccagggatgaagatctaCattgaccccttcacttacga	7	13	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134898724	G	G	134898724	4	3	145	1	0	0	0	0	0	1	0	0	5216	489	17	4	1820	4	EPHB1	3	134898724	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2712805	134898724	63123706	404	125105											
EPHB1	2047	broad.mit.edu	37	chr3	134920429	134920429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcgggacctggctgctagGaacattctggtcaacagtaa	11	10	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134920429	T	T	134920429	3	4	145	1	0	0	0	0	1	0	0	0	5216	1165	41	3	2290	3	EPHB1	3	134920429	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	21705	134920429	63102001	405	125106											
PRR23B	389151	broad.mit.edu	37	chr3	138739045	138739045	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcgtcctcctcgtaggcCtcttcctgggcggcgatctc	11	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138739045	T	T	138739045	2	4	145	1	0	0	0	0	0	0	0	1	12701	680	24	4		4	PRR23B	3	138739045	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	3818616	138739045	59283385	406	125107											
CLSTN2	64084	broad.mit.edu	37	chr3	140122600	140122600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagttgcagaaggagtacaCattcatcatccaggcctatg	10	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140122600	A	A	140122600	3	1	145	1	0	0	0	0	1	0	0	0	3594	478	17	3	372	3	CLSTN2	3	140122600	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1383555	140122600	57899830	407	125108											
CLSTN2	64084	broad.mit.edu	37	chr3	140251183	140251183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatttgtgacaaagagtgGcactactatgtcatcaatgt	9	6	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140251183	T	T	140251183	3	4	145	1	0	0	0	0	1	0	0	0	3594	1212	42	3	1396	3	CLSTN2	3	140251183	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	128583	140251183	57771247	408	125109											
PCOLCE2	26577	broad.mit.edu	37	chr3	142537261	142537261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtttggcatgattttGcctcgcccatcttcacctac	7	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142537261	T	T	142537261	2	4	145	1	0	0	0	0	0	0	0	1	11689	1306	46	3		3	PCOLCE2	3	142537261	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2286078	142537261	55485169	409	125110											
SR140	23350	broad.mit.edu	37	chr3	142731083	142731083	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatggatgcatctggaccctCagatagtgatatgccaagtc	11	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142731083	T	T	142731083	3	4	145	1	0	0	0	0	1	0	0	0	15249	838	29	4	120	4	SR140	3	142731083	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	193822	142731083	55291347	410	125111											
SR140	23350	broad.mit.edu	37	chr3	142747502	142747502	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaagagtaagatatttttCctttctattatatattcaga	6	4	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142747502	T	T	142747502	1	4	145	0	1	0	0	0	0	0	0	0	15249	870	30	4		4	SR140	3	142747502	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	16419	142747502	55274928	411	125112											
ZIC4	84107	broad.mit.edu	37	chr3	147114217	147114217	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaccgaggggctggagGcggcggtgagctgggggcca	22	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147114217	C	C	147114217	3	2	145	1	0	0	0	0	1	0	0	0	17807	1203	42	4	906	4	ZIC4	3	147114217	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	4366715	147114217	50908213	412	125113											
AGTR1	185	broad.mit.edu	37	chr3	148459409	148459409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccctcccgatagggctggGcctgaccaaaaatatactgg	10	12	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148459409	T	T	148459409	3	4	145	1	0	0	0	0	1	0	0	0	401	1203	42	3	589	3	AGTR1	3	148459409	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1345192	148459409	49563021	413	125114											
CPA3	1359	broad.mit.edu	37	chr3	148601653	148601653	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgacaataccattgactttCagtctgttcttcattaactt	4	10	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148601653	G	G	148601653	1	3	145	0	1	0	0	0	0	0	0	0	3823	841	29	4		4	CPA3	3	148601653	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	142244	148601653	49420777	414	125115											
CP	1356	broad.mit.edu	37	chr3	148904392	148904392	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttctcctctccacagataTgtgtttcctgaaaagtatat	6	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148904392	C	C	148904392	2	2	145	1	0	0	0	0	0	0	0	1	3819	1451	51	5		5	CP	3	148904392	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	302739	148904392	49118038	415	125116											
MED12L	116931	broad.mit.edu	37	chr3	150877616	150877616	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctggtgtccttctacttctCagtattcagatgagtttgtt	8	8	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150877616	G	G	150877616	1	3	145	0	1	0	0	0	0	0	0	0	9522	841	29	4		4	MED12L	3	150877616	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1973224	150877616	47144814	416	125117											
MME	4311	broad.mit.edu	37	chr3	154862057	154862057	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtttattaacatattaagtCatacaaagatagcatgtagc	6	6	1	1	rs149379903	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154862057	G	G	154862057	1	3	145	0	1	0	0	0	0	0	0	0	9738	841	29	4		4	MME	3	154862057	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3984441	154862057	43160373	417	125118											
PLCH1	23007	broad.mit.edu	37	chr3	155212152	155212152	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagcctgcgttccagtaGgggagagggttgaagttact	16	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155212152	A	A	155212152	2	1	145	1	0	0	0	0	0	0	0	1	12132	987	35	4		4	PLCH1	3	155212152	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	350095	155212152	42810278	418	125119											
KCNAB1	7881	broad.mit.edu	37	chr3	156139563	156139563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatgaggaggaggcttcCtggccagtattgccccactt	12	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156139563	A	A	156139563	1	1	145	0	1	0	0	0	0	0	0	0	8079	696	24	2		2	KCNAB1	3	156139563	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	927411	156139563	41882867	419	125120											
RSRC1	51319	broad.mit.edu	37	chr3	158261870	158261870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaacagtatccaaatcttGtgttgagagatatattctac	6	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158261870	T	T	158261870	1	4	145	0	1	0	0	0	0	0	0	0	13825	1392	48	3		3	RSRC1	3	158261870	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2122307	158261870	39760560	420	125121											
MFSD1	64747	broad.mit.edu	37	chr3	158541420	158541420	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatccagcctctggggtAgcgctgaacctggagataac	12	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158541420	T	T	158541420	1	4	145	0	1	0	0	0	0	0	0	0	9620	435	15	5		5	MFSD1	3	158541420	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	279550	158541420	39481010	421	125122											
IQCJ	654502	broad.mit.edu	37	chr3	158980621	158980621	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctacccaggaacccatgGtgagagttttgtcacctcaa	9	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158980621	C	C	158980621	1	2	145	0	1	0	0	0	0	0	0	0	7882	1276	44	4		4	IQCJ	3	158980621	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	439201	158980621	39041809	422	125123											
B3GALNT1	8706	broad.mit.edu	37	chr3	160804096	160804096	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggttattatatgtgtcTaaaaaatcttgtcggattat	8	4	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160804096	C	C	160804096	2	2	145	1	0	0	0	0	0	0	0	1	1250	1519	53	5		5	B3GALNT1	3	160804096	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	1823475	160804096	37218334	423	125124											
SI	6476	broad.mit.edu	37	chr3	164786959	164786959	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcattccacggcctccagcAgcagcctctctgtgcacaaa	8	16	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164786959	T	T	164786959	3	4	145	1	0	0	0	0	1	0	0	0	14410	188	7	5	5383	5	SI	3	164786959	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	3982863	164786959	33235471	424	125125											
SI	6476	broad.mit.edu	37	chr3	164792546	164792546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtactttttgaaagaataCatgaattcatataaaatgaa	5	3	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164792546	A	A	164792546	1	1	145	0	1	0	0	0	0	0	0	0	14410	493	17	3		3	SI	3	164792546	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5587	164792546	33229884	425	125126											
WDR49	151790	broad.mit.edu	37	chr3	167246938	167246938	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatcgatccaactccactatGagccaaaaattcagccagaa	5	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167246938	C	C	167246938	3	2	145	1	0	0	0	0	1	0	0	0	17429	1290	45	4	865	4	WDR49	3	167246938	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2454392	167246938	30775492	426	125127											
SAMD7	344658	broad.mit.edu	37	chr3	169656278	169656278	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctaaaggaattgagcgagGtagtatgagaaactaaaagc	11	5	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169656278	A	A	169656278	3	1	145	1	0	0	0	0	1	0	0	0	13935	1261	44	4	1351	4	SAMD7	3	169656278	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2409340	169656278	28366152	427	125128											
NAALADL2	254827	broad.mit.edu	37	chr3	174974218	174974218	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctgaagtcatcgatgtgAgttatggaatggcagatgat	14	4	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174974218	T	T	174974218	3	4	145	1	0	0	0	0	1	0	0	0	10224	304	11	5	852	5	NAALADL2	3	174974218	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	5317940	174974218	23048212	428	125129											
NAALADL2	254827	broad.mit.edu	37	chr3	175184908	175184908	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtggagaccagaccgaaCtattgttttctgttcttggg	13	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175184908	G	G	175184908	3	3	145	1	0	0	0	0	1	0	0	0	10224	565	20	4	1499	4	NAALADL2	3	175184908	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	210690	175184908	22837522	429	125130											
KCNMB2	10242	broad.mit.edu	37	chr3	178560609	178560609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagttccaacgtgctgttcCattcactcttctggccaacc	6	15	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178560609	A	A	178560609	3	1	145	1	0	0	0	0	1	0	0	0	8145	594	21	2	606	2	KCNMB2	3	178560609	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3375701	178560609	19461821	430	125131											
PIK3CA	5290	broad.mit.edu	37	chr3	178916645	178916645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatcatcaggtgaactgtGgggcatccacttgatgcccc	10	13	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178916645	T	T	178916645	3	4	145	1	0	0	0	0	1	0	0	0	12008	1357	47	2	34	2	PIK3CA	3	178916645	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	356036	178916645	19105785	431	125132											
CCDC39	339829	broad.mit.edu	37	chr3	180378429	180378429	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actatctttatgagctgattCttctaaccaggcctccaatg	6	11	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180378429	T	T	180378429	3	4	145	1	0	0	0	0	1	0	0	0	2838	922	32	4	2448	4	CCDC39	3	180378429	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1461784	180378429	17644001	432	125133											
YEATS2	55689	broad.mit.edu	37	chr3	183493577	183493577	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtagattacagaaaagacgGaggaaaatgggaaagaagaa	14	2	0	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183493577	C	C	183493577	1	2	145	0	1	0	0	0	0	0	0	0	17599	1189	41	4		4	YEATS2	3	183493577	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3115148	183493577	14528853	433	125134											
ABCC5	10057	broad.mit.edu	37	chr3	183643309	183643309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccagtttcctcccagaCatgccaagccaaagttcctg	10	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183643309	A	A	183643309	1	1	145	0	1	0	0	0	0	0	0	0	56	493	17	3		3	ABCC5	3	183643309	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	149732	183643309	14379121	434	125135											
HTR3E	285242	broad.mit.edu	37	chr3	183819226	183819226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtgggggagatggaacAgacttcttactggcaacatg	15	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183819226	T	T	183819226	1	4	145	0	1	0	0	0	0	0	0	0	7518	203	7	5		5	HTR3E	3	183819226	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	175917	183819226	14203204	435	125136											
DVL3	1857	broad.mit.edu	37	chr3	183888087	183888087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagcctgccccaccccgGccctgtttgcctcctacagg	9	20	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183888087	T	T	183888087	1	4	145	0	1	0	0	0	0	0	0	0	4877	1218	42	3		3	DVL3	3	183888087	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	68861	183888087	14134343	436	125137											
CLCN2	1181	broad.mit.edu	37	chr3	184072522	184072522	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actaggaagagagagggtcaGagggtgagggaggggccaac	20	5	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184072522	A	A	184072522	1	1	145	0	1	0	0	0	0	0	0	0	3494	957	33	4		4	CLCN2	3	184072522	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	184435	184072522	13949908	437	125138											
CLCN2	1181	broad.mit.edu	37	chr3	184075729	184075729	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaccaggagggactccttCattccccagcctgcagttac	8	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184075729	T	T	184075729	1	4	145	0	1	0	0	0	0	0	0	0	3494	841	29	4		4	CLCN2	3	184075729	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3207	184075729	13946701	438	125139											
IGF2BP2	10644	broad.mit.edu	37	chr3	185434085	185434085	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcatatttttggaattctTttaatgatattttctgcagc	6	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185434085	A	A	185434085	1	1	145	0	1	0	0	0	0	0	0	0	7644	1856	64	5		5	IGF2BP2	3	185434085	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1358356	185434085	12588345	439	125140											
TBCCD1	55171	broad.mit.edu	37	chr3	186276173	186276173	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcccacacaaattgtcccTtttagagaatgagatcaaga	6	10	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186276173	C	C	186276173	1	2	145	0	1	0	0	0	0	0	0	0	15754	1624	56	5		5	TBCCD1	3	186276173	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	842088	186276173	11746257	440	125141											
KNG1	3827	broad.mit.edu	37	chr3	186459875	186459875	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagttaccttttctgactttCaggactctgatctcattgca	6	11	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186459875	A	A	186459875	3	1	145	1	0	0	0	0	1	0	0	0	8498	827	29	3	1728	3	KNG1	3	186459875	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	183702	186459875	11562555	441	125142											
MASP1	5648	broad.mit.edu	37	chr3	186943419	186943419	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccttagccctttcactgCcttcatccacctttcccaga	4	18	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186943419	G	G	186943419	1	3	145	0	1	0	0	0	0	0	0	0	9414	754	26	4		4	MASP1	3	186943419	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	483544	186943419	11079011	442	125143											
MASP1	5648	broad.mit.edu	37	chr3	186947728	186947728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacagatcagactctgggCtccatcttgcccactgccag	10	14	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186947728	A	A	186947728	1	1	145	0	1	0	0	0	0	0	0	0	9414	812	28	3		3	MASP1	3	186947728	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4309	186947728	11074702	443	125144											
ATP13A4	84239	broad.mit.edu	37	chr3	193156355	193156355	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgataatgagatgcccaCatgagccattttcagagcct	8	11	2	4	rs143538005		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193156355	T	T	193156355	3	4	145	1	0	0	0	0	1	0	0	0	1130	478	17	4	1041	4	ATP13A4	3	193156355	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	6208627	193156355	4866075	444	125145											
ATP13A4	84239	broad.mit.edu	37	chr3	193201780	193201780	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgactcgacgagatggtgGagttttacagattgctgaaa	13	5	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193201780	A	A	193201780	2	1	145	1	0	0	0	0	0	0	0	1	1130	1161	41	4		4	ATP13A4	3	193201780	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	45425	193201780	4820650	445	125146											
OPA1	4976	broad.mit.edu	37	chr3	193360615	193360615	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatagttctcgggagtttgAtcttaccaaagaagaagatg	11	5	2	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193360615	T	T	193360615	3	4	145	1	0	0	0	0	1	0	0	0	10965	333	12	5	1257	5	OPA1	3	193360615	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	158835	193360615	4661815	446	125147											
MUC4	4585	broad.mit.edu	37	chr3	195498653	195498653	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggagaaaatctggtagtctGactctgggaagatgatctgg	14	5	4	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195498653	C	C	195498653	4	2	145	1	0	0	0	0	0	1	0	0	10072	1294	45	4	3210	4	MUC4	3	195498653	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2138038	195498653	2523777	447	125148											
SH3BP2	6452	broad.mit.edu	37	chr4	2834173	2834173	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagatgccccagggcccctCtggctctccacacacccagg	10	18	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2834173	G	G	2834173	1	3	145	0	1	0	0	0	0	0	0	0	14358	928	32	4		4	SH3BP2	4	2834173	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08		2834173	188320103	448	125149											
RGS12	6002	broad.mit.edu	37	chr4	3424628	3424628	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattctggtctctctgttccTcagcctctggtgctgcacca	9	14	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3424628	C	C	3424628	1	2	145	0	1	0	0	0	0	0	0	0	13404	1566	54	5		5	RGS12	4	3424628	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	590455	3424628	187729648	449	125150											
WDR1	9948	broad.mit.edu	37	chr4	10079394	10079394	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccgagtagccgtcagcaaCgctgaacactgtgaccacct	9	15	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10079394	T	T	10079394	3	4	145	1	0	0	0	0	1	0	0	0	17399	536	19	4	280	4	WDR1	4	10079394	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	6654766	10079394	181074882	450	125151											
SLIT2	9353	broad.mit.edu	37	chr4	20569083	20569083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctttattattctactgtGctttctgtatgtgccaagaa	7	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20569083	T	T	20569083	1	4	145	0	1	0	0	0	0	0	0	0	14854	1334	46	3		3	SLIT2	4	20569083	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	10489689	20569083	170585193	451	125152											
GBA3	57733	broad.mit.edu	37	chr4	22737879	22737879	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagctttaattcaaggttaTtgctgcagtctggcataatt	9	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22737879	A	A	22737879	1	1	145	0	1	0	0	0	0	0	0	0	6330	1508	52	5		5	GBA3	4	22737879	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2168796	22737879	168416397	452	125153											
CCKAR	886	broad.mit.edu	37	chr4	26483223	26483223	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcttctctgcctcctcCctgccttccttctgcggtgg	7	17	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26483223	A	A	26483223	1	1	145	0	1	0	0	0	0	0	0	0	2908	638	22	2		2	CCKAR	4	26483223	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	3745344	26483223	164671053	453	125154											
NSUN7	79730	broad.mit.edu	37	chr4	40778314	40778314	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcatttggtgattattgttCtgcaagattttagaaacgtt	8	4	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40778314	T	T	40778314	1	4	145	0	1	0	0	0	0	0	0	0	10778	928	32	4		4	NSUN7	4	40778314	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	14295091	40778314	150375962	454	125155											
DCAF4L1	285429	broad.mit.edu	37	chr4	41984848	41984848	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggagcctccatgatgccCacctgctcagaaccatccct	7	17	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41984848	T	T	41984848	3	4	145	1	0	0	0	0	1	0	0	0	4304	594	21	4	1041	4	DCAF4L1	4	41984848	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1206534	41984848	149169428	455	125156											
GUF1	60558	broad.mit.edu	37	chr4	44683138	44683138	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcaatatttttgtttctcAgggccatgttgattttagtt	7	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44683138	T	T	44683138	5	4	145	1	0	0	0	0	0	0	1	0	6964	202	7	5	439	5	GUF1	4	44683138	Splice_Site	SNP	A	TCGA-49-6743-01A-11D-1855-08	2698290	44683138	146471138	456	125157											
OCIAD1	54940	broad.mit.edu	37	chr4	48852087	48852087	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcaggacaagcacgacgatCttcaccacctgggtaggcca	10	13	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48852087	G	G	48852087	3	3	145	1	0	0	0	0	1	0	0	0	10912	913	32	4	402	4	OCIAD1	4	48852087	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	4168949	48852087	142302189	457	125158											
CWH43	80157	broad.mit.edu	37	chr4	49006003	49006003	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagagaaagatcagatgtgCttttgggtgagtacatttga	12	4	1	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49006003	T	T	49006003	3	4	145	1	0	0	0	0	1	0	0	0	4106	797	28	4	1080	4	CWH43	4	49006003	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	153916	49006003	142148273	458	125159											
GSX2	170825	broad.mit.edu	37	chr4	54966627	54966627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcccgcttggcatgccgcCcccattggtgatgtccgtgt	11	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54966627	A	A	54966627	3	1	145	1	0	0	0	0	1	0	0	0	6915	623	22	2	118	2	GSX2	4	54966627	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5960624	54966627	136187649	459	125160											
CEP135	9662	broad.mit.edu	37	chr4	56874615	56874615	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaatacagctttatctattCagtagcattgcagcaataga	7	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56874615	T	T	56874615	1	4	145	0	1	0	0	0	0	0	0	0	3277	841	29	4		4	CEP135	4	56874615	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1907988	56874615	134279661	460	125161											
TECRL	253017	broad.mit.edu	37	chr4	65274987	65274987	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgaaaatttctcatatcaTccttcagtatgaaccgtgta	6	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65274987	C	C	65274987	3	2	145	1	0	0	0	0	1	0	0	0	15868	1435	50	5	1056	5	TECRL	4	65274987	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	8400372	65274987	125879289	461	125162											
EPHA5	2044	broad.mit.edu	37	chr4	66217268	66217268	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcattcctgcagagatacCtctcagcatgccaacaagct	6	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66217268	G	G	66217268	3	3	145	1	0	0	0	0	1	0	0	0	5212	681	24	4	786	4	EPHA5	4	66217268	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	942281	66217268	124937008	462	125163											
UBA6	55236	broad.mit.edu	37	chr4	68547937	68547937	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgtacctctgtcgactacaCggaaaacacaataaaaaaca	5	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68547937	G	G	68547937	1	3	145	0	1	0	0	0	0	0	0	0	16958	551	19	4		4	UBA6	4	68547937	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2330669	68547937	122606339	463	125164											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68708348	68708348	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgttttagtaatctgtAgaaagaaagagagggggaat	13	1	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68708348	T	T	68708348	1	4	145	0	1	0	0	0	0	0	0	0	16364	435	15	5		5	TMPRSS11D	4	68708348	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	160411	68708348	122445928	464	125165											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68725318	68725318	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagctatggtgactgccagGatcactacccctgcgacgac	11	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68725318	T	T	68725318	2	4	145	1	0	0	0	0	0	0	0	1	16364	1164	41	3		3	TMPRSS11D	4	68725318	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	16970	68725318	122428958	465	125166											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68935549	68935549	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatgctaaaaataataaAaagactaagtgttcggttta	6	3	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68935549	C	C	68935549	1	2	145	0	1	0	0	0	0	0	0	0	16366	29	1	5		5	TMPRSS11F	4	68935549	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	210231	68935549	122218727	466	125167											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68956360	68956360	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaatagaaagacttatcatCtgaaaggtaaaacaaacaaa	6	5	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68956360	A	A	68956360	5	1	145	1	0	0	0	0	0	0	1	0	16366	927	32	3	1185	3	TMPRSS11F	4	68956360	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	20811	68956360	122197916	467	125168											
HTN3	3347	broad.mit.edu	37	chr4	70896519	70896519	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccatgactgtaagtatatCtggaagttttaaaggataca	8	5	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70896519	A	A	70896519	1	1	145	0	1	0	0	0	0	0	0	0	7505	928	32	3		3	HTN3	4	70896519	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1940159	70896519	120257757	468	125169											
C4orf40	401137	broad.mit.edu	37	chr4	71024466	71024467	+	Missense_Mutation	DNP	CT	TG	TG													tgcagaggcacctgttggagCtgagcctgctgcagaggcac							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	71024467	TG	TG	71024466	3	4	145	1	0	0	0	0	1	0	0	0	2292	797	28	4	507	4	C4orf40	4	71024466	Missense_Mutation	DNP	CT	TCGA-49-6743-01A-11D-1855-08	127947	71024466	120129810	469	125170											
AMBN	258	broad.mit.edu	37	chr4	71465316	71465316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacggtctcctcccaccaCattcctctcttccatggatg	6	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71465316	A	A	71465316	3	1	145	1	0	0	0	0	1	0	0	0	563	478	17	3	265	3	AMBN	4	71465316	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	440850	71465316	119688960	470	125171											
HELQ	113510	broad.mit.edu	37	chr4	84374582	84374582	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcgcatttccagtcatggCattttttagatgatctttaa	6	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84374582	G	G	84374582	3	3	145	1	0	0	0	0	1	0	0	0	7114	710	25	4	2559	4	HELQ	4	84374582	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	12909266	84374582	106779694	471	125172											
WDFY3	23001	broad.mit.edu	37	chr4	85656259	85656259	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagcaatgtgagtaaacatCcactgcgaaatctcctaaca	6	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85656259	T	T	85656259	4	4	145	1	0	0	0	0	0	1	0	0	17397	856	30	4	3754	4	WDFY3	4	85656259	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1281677	85656259	105498017	472	125173											
SLC10A6	345274	broad.mit.edu	37	chr4	87749288	87749288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccagcaactgcgaccaCcagaaggaggaccccaccaa	8	17	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87749288	A	A	87749288	3	1	145	1	0	0	0	0	1	0	0	0	14491	507	18	3	526	3	SLC10A6	4	87749288	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2093029	87749288	103404988	473	125174											
HERC5	51191	broad.mit.edu	37	chr4	89383387	89383387	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agattgtggagcacctcgcaGgagtacccttggctcagatt	12	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89383387	C	C	89383387	3	2	145	1	0	0	0	0	1	0	0	0	7128	1001	35	4	582	4	HERC5	4	89383387	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1634099	89383387	101770889	474	125175											
BANK1	55024	broad.mit.edu	37	chr4	102946245	102946245	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgacagcttttcactatatCaggtcataaaagttttatta	5	6	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102946245	T	T	102946245	1	4	145	0	1	0	0	0	0	0	0	0	1314	841	29	4		4	BANK1	4	102946245	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	13562858	102946245	88208031	475	125176											
CENPE	1062	broad.mit.edu	37	chr4	104081905	104081905	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctttctgaagatcagtaatCtttccttccaattccaaatt	3	10	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104081905	G	G	104081905	3	3	145	1	0	0	0	0	1	0	0	0	3260	912	32	4	6058	4	CENPE	4	104081905	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1135660	104081905	87072371	476	125177											
COL25A1	84570	broad.mit.edu	37	chr4	109817893	109817893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgagaaagtgacacatGtaaaatacattggtgacgtc	12	5	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109817893	T	T	109817893	1	4	145	0	1	0	0	0	0	0	0	0	3716	1392	48	3		3	COL25A1	4	109817893	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	5735988	109817893	81336383	477	125178											
COL25A1	84570	broad.mit.edu	37	chr4	109862482	109862482	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacacagagcaataactgaTgtaaagaagaaatcagactt	8	6	1	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109862482	A	A	109862482	1	1	145	0	1	0	0	0	0	0	0	0	3716	1479	51	5		5	COL25A1	4	109862482	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	44589	109862482	81291794	478	125179											
KIAA1109	84162	broad.mit.edu	37	chr4	123128714	123128714	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgtatctggcagcctgtgGagaaacactaaacattgatt	10	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123128714	A	A	123128714	3	1	145	1	0	0	0	0	1	0	0	0	8278	1174	41	4	1731	4	KIAA1109	4	123128714	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	13266232	123128714	68025562	479	125180											
ADAD1	132612	broad.mit.edu	37	chr4	123334018	123334018	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcactaagcaaattctctGtattttacttatcagtataa	3	8	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123334018	A	A	123334018	1	1	145	0	1	0	0	0	0	0	0	0	231	1392	48	4		4	ADAD1	4	123334018	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	205304	123334018	67820258	480	125181											
PCDH10	57575	broad.mit.edu	37	chr4	134076053	134076053	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttttttattctaatattCacatttttgtacttctagtt	2	7	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134076053	T	T	134076053	1	4	145	0	1	0	0	0	0	0	0	0	11601	841	29	4		4	PCDH10	4	134076053	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	10742035	134076053	57078223	481	125182											
INPP4B	8821	broad.mit.edu	37	chr4	143007291	143007291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagatttgacatgagagtGcttaccgttgcagccagcca	10	9	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143007291	T	T	143007291	1	4	145	0	1	0	0	0	0	0	0	0	7823	1334	46	3		3	INPP4B	4	143007291	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	8931238	143007291	48146985	482	125183											
FGG	2266	broad.mit.edu	37	chr4	155531077	155531077	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactgttttttttagctattCaagaaaggtctagacaactg	7	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155531077	T	T	155531077	1	4	145	0	1	0	0	0	0	0	0	0	5927	841	29	4		4	FGG	4	155531077	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	12523786	155531077	35623199	483	125184											
PPID	5481	broad.mit.edu	37	chr4	159631959	159631959	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgccatccttgagctctGcggtacaatgctttggtatt	9	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159631959	A	A	159631959	2	1	145	1	0	0	0	0	0	0	0	1	12422	1306	46	4		4	PPID	4	159631959	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	4100882	159631959	31522317	484	125185											
KLHL2	11275	broad.mit.edu	37	chr4	166238894	166238894	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagaaattagtgtctctgGattacctcactaaacatgta	6	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166238894	T	T	166238894	1	4	145	0	1	0	0	0	0	0	0	0	8445	1189	41	3		3	KLHL2	4	166238894	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	6606935	166238894	24915382	485	125186											
TLL1	7092	broad.mit.edu	37	chr4	167020286	167020286	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatgacactatctgactctCcagttgtggaaaacatatct	6	11	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167020286	T	T	167020286	1	4	145	0	1	0	0	0	0	0	0	0	16068	870	30	4		4	TLL1	4	167020286	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	781392	167020286	24133990	486	125187											
DDX60	55601	broad.mit.edu	37	chr4	169194354	169194354	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacaagccttgtgaagatgTtgaatttctagtcaaagaga	9	6	3	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169194354	A	A	169194354	1	1	145	0	1	0	0	0	0	0	0	0	4411	1740	60	5		5	DDX60	4	169194354	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2174068	169194354	21959922	487	125188											
GALNTL6	442117	broad.mit.edu	37	chr4	173269920	173269920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttttaaaaaagacaatgGgagcttctttctgattccat	6	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173269920	T	T	173269920	1	4	145	0	1	0	0	0	0	0	0	0	6287	1247	43	2		2	GALNTL6	4	173269920	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4075566	173269920	17884356	488	125189											
GLRA3	8001	broad.mit.edu	37	chr4	175649873	175649873	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgataaaataatgaaagaaaGaaaaaaaaaaaccctgcttt	5	4	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175649873	A	A	175649873	1	1	145	0	1	0	0	0	0	0	0	0	6520	957	33	4		4	GLRA3	4	175649873	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2379953	175649873	15504403	489	125190											
GPM6A	2823	broad.mit.edu	37	chr4	176883175	176883175	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacaactgaaaatgttcaCgtctcaggccttacttaaga	7	10	2	2	rs146989777	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176883175	T	T	176883175	1	4	145	0	1	0	0	0	0	0	0	0	6680	551	19	4		4	GPM6A	4	176883175	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1233302	176883175	14271101	490	125191											
CEP72	55722	broad.mit.edu	37	chr5	637597	637597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgcacccagagaatttGgcctgacgtgcgccccatcc	9	16	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	637597	T	T	637597	1	4	145	0	1	0	0	0	0	0	0	0	3290	1363	47	2		2	CEP72	5	637597	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08		637597	180277663	491	125192											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239460	5239460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcttagcagagcttgaGgtgacagtgaaaacagcagg	14	7	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5239460	T	T	5239460	1	4	145	0	1	0	0	0	0	0	0	0	261	1015	35	2		2	ADAMTS16	5	5239460	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4601863	5239460	175675800	492	125193											
ADCY2	108	broad.mit.edu	37	chr5	7724707	7724707	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatctcactgcttttctatAacaaagtactagaaaaagag	6	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7724707	T	T	7724707	3	4	145	1	0	0	0	0	1	0	0	0	294	362	13	5	1803	5	ADCY2	5	7724707	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	2485247	7724707	173190553	493	125194											
SEMA5A	9037	broad.mit.edu	37	chr5	9044500	9044500	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaccttgatggcctccacCgagtcgtacttgtccagttt	8	13	0	1	rs150116452	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9044500	A	A	9044500	2	1	145	1	0	0	0	0	0	0	0	1	14150	639	23	1		1	SEMA5A	5	9044500	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1319793	9044500	171870760	494	125195											
SEMA5A	9037	broad.mit.edu	37	chr5	9238005	9238005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactcccattccacagcctGtagaaaacaccaaaacaata	3	14	0	1	rs1806007	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9238005	T	T	9238005	1	4	145	0	1	0	0	0	0	0	0	0	14150	1392	48	3		3	SEMA5A	5	9238005	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	193505	9238005	171677255	495	125196											
CTNND2	1501	broad.mit.edu	37	chr5	11199480	11199480	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacaccacaatatttatttGattagtacatttgcctctgt	5	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11199480	C	C	11199480	1	2	145	0	1	0	0	0	0	0	0	0	4054	1305	45	4		4	CTNND2	5	11199480	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1961475	11199480	169715780	496	125197											
DNAH5	1767	broad.mit.edu	37	chr5	13891031	13891031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaaaaaagtgacctttaTaggaaaatgaatcaccaaaa	5	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13891031	C	C	13891031	1	2	145	0	1	0	0	0	0	0	0	0	4644	1421	49	5		5	DNAH5	5	13891031	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2691551	13891031	167024229	497	125198											
ANKH	56172	broad.mit.edu	37	chr5	14797239	14797239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaagacatatttaggacCcttgtccttctggatccatg	8	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797239	A	A	14797239	1	1	145	0	1	0	0	0	0	0	0	0	627	638	22	2		2	ANKH	5	14797239	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	906208	14797239	166118021	498	125199											
CDH18	1016	broad.mit.edu	37	chr5	19520746	19520746	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tattccattcaaatgaggagGaaggaaacaattaacttacc	7	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19520746	A	A	19520746	1	1	145	0	1	0	0	0	0	0	0	0	3133	1189	41	4		4	CDH18	5	19520746	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4723507	19520746	161394514	499	125200											
CDH18	1016	broad.mit.edu	37	chr5	19839061	19839061	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaacagagacacactaggActggacagatgcaagatgtg	11	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19839061	G	G	19839061	3	3	145	1	0	0	0	0	1	0	0	0	3133	275	10	5	2381	5	CDH18	5	19839061	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	318315	19839061	161076199	500	125201											
CDH12	1010	broad.mit.edu	37	chr5	21882819	21882819	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcccgagccttaatgcttCaaggtgtaggtagacctttt	10	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21882819	A	A	21882819	1	1	145	0	1	0	0	0	0	0	0	0	3128	841	29	3		3	CDH12	5	21882819	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2043758	21882819	159032441	501	125202											
CDH12	1010	broad.mit.edu	37	chr5	21884073	21884073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactcattgactccagctaaTgaagatcaaaaaattggtat	7	7	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21884073	C	C	21884073	1	2	145	0	1	0	0	0	0	0	0	0	3128	1479	51	5		5	CDH12	5	21884073	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1254	21884073	159031187	502	125203											
PRDM9	56979	broad.mit.edu	37	chr5	23518137	23518137	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactatcataggaactaatgCcttcttttcctgatctcttt	5	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23518137	G	G	23518137	1	3	145	0	1	0	0	0	0	0	0	0	12569	754	26	4		4	PRDM9	5	23518137	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1634064	23518137	157397123	503	125204											
PRDM9	56979	broad.mit.edu	37	chr5	23527596	23527596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccagaggacacacacagGggagaagccctatgtctgca	11	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23527596	T	T	23527596	3	4	145	1	0	0	0	0	1	0	0	0	12569	1232	43	2	2437	2	PRDM9	5	23527596	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	9459	23527596	157387664	504	125205											
CDH10	1008	broad.mit.edu	37	chr5	24511461	24511462	+	Frame_Shift_Del	DEL	TG	-	-													tcacagtgatgatgccttccTgtgtgtccttctcagtcacg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24511462	-	-	24511461	7	5	145	1	0	1	0	1	0	0	0	0	3126	1580	55	0	1417	0	CDH10	5	24511461	Frame_Shift_Del	DEL	TG	TCGA-49-6743-01A-11D-1855-08	983865	24511461	156403799	505	125206											
CDH10	1008	broad.mit.edu	37	chr5	24593655	24593655	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtggtcctattttaccCagttggttttactgtgtttc	9	7	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24593655	A	A	24593655	1	1	145	0	1	0	0	0	0	0	0	0	3126	609	21	2		2	CDH10	5	24593655	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	82194	24593655	156321605	506	125207											
CDH9	1007	broad.mit.edu	37	chr5	26890652	26890652	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaatacggtccatatcAgtatgccgatcaacagagta	7	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26890652	T	T	26890652	2	4	145	1	0	0	0	0	0	0	0	1	3147	175	7	5		5	CDH9	5	26890652	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	2296997	26890652	154024608	507	125208											
CDH9	1007	broad.mit.edu	37	chr5	26906090	26906090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaaatcgaggagggttGttgttgacatctgtcagcgt	16	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26906090	T	T	26906090	3	4	145	1	0	0	0	0	1	0	0	0	3147	1368	48	3	1612	3	CDH9	5	26906090	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	15438	26906090	154009170	508	125209											
RNASEN	29102	broad.mit.edu	37	chr5	31504659	31504659	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acataataacccaaaccagtTacctcttctccaggataaat	3	12	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31504659	A	A	31504659	1	1	145	0	1	0	0	0	0	0	0	0	13528	1769	61	5		5	RNASEN	5	31504659	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4598569	31504659	149410601	509	125210											
C5orf22	55322	broad.mit.edu	37	chr5	31538638	31538638	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagtgaccagacttgcctaGaaccatcatgttcatgttct	8	10	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31538638	A	A	31538638	3	1	145	1	0	0	0	0	1	0	0	0	2308	943	33	4	663	4	C5orf22	5	31538638	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	33979	31538638	149376622	510	125211											
ADAMTS12	81792	broad.mit.edu	37	chr5	33561167	33561167	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactttccagccagcacaggGacggaggtggcatctttttg	12	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33561167	A	A	33561167	3	1	145	1	0	0	0	0	1	0	0	0	257	1174	41	4	714	4	ADAMTS12	5	33561167	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2022529	33561167	147354093	511	125212											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576822	33576822	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgaactggaaacattttcCtcacttggctgaatgctcaa	7	10	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33576822	T	T	33576822	2	4	145	1	0	0	0	0	0	0	0	1	257	680	24	4		4	ADAMTS12	5	33576822	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	15655	33576822	147338438	512	125213											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881488	33881488	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttcctcctgctgctcgtGatgggatagtgcaagccata	10	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33881488	A	A	33881488	2	1	145	1	0	0	0	0	0	0	0	1	257	1280	45	4		4	ADAMTS12	5	33881488	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	304666	33881488	147033772	513	125214											
SLC45A2	51151	broad.mit.edu	37	chr5	33947472	33947472	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtaggataccaaaactttCtgaaagtctgtgggaagaag	11	5	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33947472	G	G	33947472	3	3	145	1	0	0	0	0	1	0	0	0	14755	912	32	4	451	4	SLC45A2	5	33947472	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	65984	33947472	146967788	514	125215											
SPEF2	79925	broad.mit.edu	37	chr5	35654782	35654782	+	Frame_Shift_Del	DEL	G	-	-													agagcaaagggagaaaagacGgcggaaattgttaatggacc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35654782	-	-	35654782	7	5	145	1	0	1	0	1	0	0	0	0	15153	1116	39	0	958	0	SPEF2	5	35654782	Frame_Shift_Del	DEL	G	TCGA-49-6743-01A-11D-1855-08	1707310	35654782	145260478	515	125216											
IL7R	3575	broad.mit.edu	37	chr5	35871201	35871201	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagtgtcgtctatcgggaAggagccaatgactttgtggt	14	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35871201	G	G	35871201	2	3	145	1	0	0	0	0	0	0	0	1	7775	69	3	5		5	IL7R	5	35871201	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	216419	35871201	145044059	516	125217											
C5orf42	65250	broad.mit.edu	37	chr5	37121711	37121711	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatggcatgtgaaacctTgtcttaccctcttggagaag	9	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37121711	A	A	37121711	1	1	145	0	1	0	0	0	0	0	0	0	2324	1827	63	5		5	C5orf42	5	37121711	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1250510	37121711	143793549	517	125218											
FYB	2533	broad.mit.edu	37	chr5	39169919	39169919	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaattttcttcagtggTtttgatggtggttatactgg	11	3	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39169919	G	G	39169919	1	3	145	0	1	0	0	0	0	0	0	0	6184	1740	60	5		5	FYB	5	39169919	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2048208	39169919	141745341	518	125219											
C9	735	broad.mit.edu	37	chr5	39289127	39289127	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaatacactttacttaatTattcattcactgattcatta	2	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39289127	C	C	39289127	1	2	145	0	1	0	0	0	0	0	0	0	2469	1769	61	5		5	C9	5	39289127	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	119208	39289127	141626133	519	125220											
DAB2	1601	broad.mit.edu	37	chr5	39381764	39381764	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccttagttactcactaacAgtgaaatacagcctcatttt	5	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39381764	T	T	39381764	1	4	145	0	1	0	0	0	0	0	0	0	4251	203	7	5		5	DAB2	5	39381764	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	92637	39381764	141533496	520	125221											
TTC33	23548	broad.mit.edu	37	chr5	40746842	40746842	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taactcttcatcccattacgGacagtgagctagaaaatgta	7	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40746842	A	A	40746842	1	1	145	0	1	0	0	0	0	0	0	0	16828	1189	41	4		4	TTC33	5	40746842	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1365078	40746842	140168418	521	125222											
HEATR7B2	133558	broad.mit.edu	37	chr5	40998210	40998210	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagggtttgcaaagcagcctCagctgctctctggacactaa	11	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40998210	T	T	40998210	3	4	145	1	0	0	0	0	1	0	0	0	7102	835	29	4	59	4	HEATR7B2	5	40998210	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	251368	40998210	139917050	522	125223											
HEATR7B2	133558	broad.mit.edu	37	chr5	40999828	40999828	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctcccaggtgctggtgaaGaaggtgaaggagtgtgtgtg	17	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40999828	C	C	40999828	3	2	145	1	0	0	0	0	1	0	0	0	7102	933	33	4	233	4	HEATR7B2	5	40999828	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1618	40999828	139915432	523	125224											
GHR	2690	broad.mit.edu	37	chr5	42718183	42718183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgattctgcccccagttcCagttccaaagattaaaggaa	8	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42718183	A	A	42718183	3	1	145	1	0	0	0	0	1	0	0	0	6435	594	21	2	935	2	GHR	5	42718183	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1718355	42718183	138197077	524	125225											
MGC42105	167359	broad.mit.edu	37	chr5	43277259	43277259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaaagctgcaccatccCaacatcatccgcctttacga	6	14	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43277259	A	A	43277259	2	1	145	1	0	0	0	0	0	0	0	1	9645	581	21	2		2	MGC42105	5	43277259	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	559076	43277259	137638001	525	125226											
NNT	23530	broad.mit.edu	37	chr5	43667369	43667369	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccggtcccgaagtgcctAgaaccctattttttattatt	7	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43667369	G	G	43667369	1	3	145	0	1	0	0	0	0	0	0	0	10605	435	15	5		5	NNT	5	43667369	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	390110	43667369	137247891	526	125227											
ITGA1	3672	broad.mit.edu	37	chr5	52211397	52211397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgacagatgtgactattgGgggccttggtggtgctgccc	15	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52211397	T	T	52211397	3	4	145	1	0	0	0	0	1	0	0	0	7942	1232	43	2	2019	2	ITGA1	5	52211397	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	8544028	52211397	128703863	527	125228											
ELOVL7	79993	broad.mit.edu	37	chr5	60063570	60063570	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtcatctgcttattctaaGtttacgttcagtgttacaaa	7	7	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60063570	C	C	60063570	1	2	145	0	1	0	0	0	0	0	0	0	5121	1044	36	4		4	ELOVL7	5	60063570	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	7852173	60063570	120851690	528	125229											
RNF180	285671	broad.mit.edu	37	chr5	63509778	63509778	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcagaaccaaaataccagCtttttgttccccagcttgtg	6	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63509778	G	G	63509778	3	3	145	1	0	0	0	0	1	0	0	0	13575	797	28	4	635	4	RNF180	5	63509778	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3446208	63509778	117405482	529	125230											
RGS7BP	401190	broad.mit.edu	37	chr5	63890757	63890757	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttaggggccacagagagacGaggttttctagttcagattc	12	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63890757	A	A	63890757	1	1	145	0	1	0	0	0	0	0	0	0	13420	1073	37	4		4	RGS7BP	5	63890757	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	380979	63890757	117024503	530	125231											
MAST4	375449	broad.mit.edu	37	chr5	66458488	66458488	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttctcctttactccacaCcagccgaagtttctcctgct	5	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66458488	T	T	66458488	3	4	145	1	0	0	0	0	1	0	0	0	9419	507	18	4	4079	4	MAST4	5	66458488	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2567731	66458488	114456772	531	125232											
PIK3R1	5295	broad.mit.edu	37	chr5	67588928	67588928	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttgtgttttcatttcaGggaagaagtgaatgaaaaac	10	3	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67588928	T	T	67588928	5	4	145	1	0	0	0	0	0	0	1	0	12013	1014	35	2	1179	2	PIK3R1	5	67588928	Splice_Site	SNP	G	TCGA-49-6743-01A-11D-1855-08	1130440	67588928	113326332	532	125233											
GFM2	84340	broad.mit.edu	37	chr5	74041686	74041686	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttcaccaattggtaactgTaagtcagagtgagattaaca	9	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74041686	C	C	74041686	1	2	145	0	1	0	0	0	0	0	0	0	6406	1653	57	5		5	GFM2	5	74041686	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	6452758	74041686	106873574	533	125234											
GCNT4	51301	broad.mit.edu	37	chr5	74325326	74325326	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattggagaagcacttagcTaaattgttcatggcaacttt	8	6	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74325326	A	A	74325326	3	1	145	1	0	0	0	0	1	0	0	0	6365	1519	53	5	828	5	GCNT4	5	74325326	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	283640	74325326	106589934	534	125235											
POC5	134359	broad.mit.edu	37	chr5	74990568	74990568	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagttgttttaaatgtgctGcatgtttttctttctctttt	6	6	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74990568	C	C	74990568	3	2	145	1	0	0	0	0	1	0	0	0	12272	1319	46	4	1153	4	POC5	5	74990568	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	665242	74990568	105924692	535	125236											
RASGRF2	5924	broad.mit.edu	37	chr5	80513386	80513386	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgtctgctttttttttTtctcttcttttttttttttt	2	6	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80513386	C	C	80513386	1	2	145	0	1	0	0	0	0	0	0	0	13181	1856	64	5		5	RASGRF2	5	80513386	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	5522818	80513386	100401874	536	125237											
VCAN	1462	broad.mit.edu	37	chr5	82789668	82789668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgttatggagataagatGggaaaggcaggagtcaggac	17	4	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82789668	T	T	82789668	3	4	145	1	0	0	0	0	1	0	0	0	17265	1348	47	2	680	2	VCAN	5	82789668	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2276282	82789668	98125592	537	125238											
TMEM161B	153396	broad.mit.edu	37	chr5	87492315	87492315	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaatgattacctagaaaatCaaagacacaaatacaatttg	6	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87492315	G	G	87492315	1	3	145	0	1	0	0	0	0	0	0	0	16200	841	29	4		4	TMEM161B	5	87492315	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4702647	87492315	93422945	538	125239											
POLR3G	10622	broad.mit.edu	37	chr5	89781468	89781468	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaggtgaaaagttaccTgatgtagtgttgaaaccacc	10	7	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89781468	C	C	89781468	2	2	145	1	0	0	0	0	0	0	0	1	12329	1567	55	5		5	POLR3G	5	89781468	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	2289153	89781468	91133792	539	125240											
GPR98	84059	broad.mit.edu	37	chr5	90052969	90052969	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgggattcttgaatttgcAgataaacaggtatgccagtc	10	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90052969	T	T	90052969	2	4	145	1	0	0	0	0	0	0	0	1	6787	175	7	5		5	GPR98	5	90052969	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	271501	90052969	90862291	540	125241											
MAN2A1	4124	broad.mit.edu	37	chr5	109183385	109183385	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagttatcatggatcgaaGactcatgcaagatgataatc	9	6	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109183385	A	A	109183385	3	1	145	1	0	0	0	0	1	0	0	0	9306	942	33	4	2944	4	MAN2A1	5	109183385	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	19130416	109183385	71731875	541	125242											
TMED7-TICAM2	100302736	broad.mit.edu	37	chr5	114961405	114961405	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggcgccgccgggtccagGcaccagtagcagcagtgcga	16	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114961405	C	C	114961405	1	2	145	0	1	0	0	0	0	0	0	0	16133	1203	42	4		4	TMED7-TICAM2	5	114961405	5'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	5778020	114961405	65953855	542	125243											
SEMA6A	57556	broad.mit.edu	37	chr5	115782711	115782711	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccgcttgcttagaccggtCtgagacagggaggctcccgg	15	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115782711	G	G	115782711	3	3	145	1	0	0	0	0	1	0	0	0	14152	912	32	4	405	4	SEMA6A	5	115782711	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	821306	115782711	65132549	543	125244											
ISOC1	51015	broad.mit.edu	37	chr5	128430780	128430780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatccaggtgggtcctgcGggaggccgcgcgcttccctg	16	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128430780	T	T	128430780	1	4	145	0	1	0	0	0	0	0	0	0	7932	1131	39	1		1	ISOC1	5	128430780	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	12648069	128430780	52484480	544	125245											
RAPGEF6	51735	broad.mit.edu	37	chr5	130843796	130843796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagaataatagctccagCctgctctaccacttcaaaaa	4	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130843796	A	A	130843796	3	1	145	1	0	0	0	0	1	0	0	0	13156	739	26	3	4461	3	RAPGEF6	5	130843796	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2413016	130843796	50071464	545	125246											
WNT8A	7478	broad.mit.edu	37	chr5	137424687	137424687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggatctccaaactctttGtggacagtttggagaagggg	13	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137424687	T	T	137424687	3	4	145	1	0	0	0	0	1	0	0	0	17523	1377	48	3	457	3	WNT8A	5	137424687	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	6580891	137424687	43490573	546	125247											
DNAJC18	202052	broad.mit.edu	37	chr5	138762004	138762004	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtattcatcatagcgaagtCtcttatcaggattgctcagg	9	9	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138762004	G	G	138762004	3	3	145	1	0	0	0	0	1	0	0	0	4677	913	32	4	680	4	DNAJC18	5	138762004	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1337317	138762004	42153256	547	125248											
PCDHAC1	56135	broad.mit.edu	37	chr5	140307901	140307901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaggaccccgacctggGgaagaatggccttgtctctt	12	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140307901	T	T	140307901	3	4	145	1	0	0	0	0	1	0	0	0	11626	1232	43	2	1426	2	PCDHAC1	5	140307901	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1545897	140307901	40607359	548	125249											
PCDHB1	29930	broad.mit.edu	37	chr5	140432666	140432666	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtaaaggcaactgatggGggcttcctgtcactgagtag	15	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140432666	T	T	140432666	2	4	145	1	0	0	0	0	0	0	0	1	11628	1219	43	2		2	PCDHB1	5	140432666	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	124765	140432666	40482594	549	125250											
PCDHB7	56129	broad.mit.edu	37	chr5	140552601	140552601	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggggaactgagagcccGgggaactagaattgtttcag	16	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140552601	A	A	140552601	3	1	145	1	0	0	0	0	1	0	0	0	11641	1116	39	4	187	4	PCDHB7	5	140552601	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	119935	140552601	40362659	550	125251											
FCHSD1	89848	broad.mit.edu	37	chr5	141028826	141028826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgacttcggctcagctccCggacagactgcagcacctca	9	17	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141028826	A	A	141028826	3	1	145	1	0	0	0	0	1	0	0	0	5846	652	23	1	1707	1	FCHSD1	5	141028826	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	476225	141028826	39886434	551	125252											
PLAC8L1	153770	broad.mit.edu	37	chr5	145463988	145463988	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtaaggaggaggagttatCttgctgtcaaaccagggtgt	15	5	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145463988	G	G	145463988	1	3	145	0	1	0	0	0	0	0	0	0	12111	928	32	4		4	PLAC8L1	5	145463988	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	4435162	145463988	35451272	552	125253											
TCERG1	10915	broad.mit.edu	37	chr5	145849157	145849157	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacccatgatacatccccagGttgctattgcagcttcacct	6	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145849157	C	C	145849157	3	2	145	1	0	0	0	0	1	0	0	0	15807	1261	44	4	1275	4	TCERG1	5	145849157	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	385169	145849157	35066103	553	125254											
FBXO38	81545	broad.mit.edu	37	chr5	147807317	147807317	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttcctttaggactctGccacaaggggggtcttcagg	12	11	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147807317	T	T	147807317	2	4	145	1	0	0	0	0	0	0	0	1	5803	1306	46	3		3	FBXO38	5	147807317	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1958160	147807317	33107943	554	125255											
DCTN4	51164	broad.mit.edu	37	chr5	150121493	150121493	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaggattctccattatcttAagtcatttggaaaaaagtga	7	6	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150121493	C	C	150121493	1	2	145	0	1	0	0	0	0	0	0	0	4342	377	13	5		5	DCTN4	5	150121493	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2314176	150121493	30793767	555	125256											
FAT2	2196	broad.mit.edu	37	chr5	150922767	150922767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttcaccttgaccacacCagtgactgggttaatttcaa	7	11	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150922767	A	A	150922767	3	1	145	1	0	0	0	0	1	0	0	0	5747	594	21	2	5188	2	FAT2	5	150922767	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	801274	150922767	29992493	556	125257											
GRIA1	2890	broad.mit.edu	37	chr5	153175029	153175029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgttatttcccccctgGttgaagaggtcccgtaaacc	8	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153175029	T	T	153175029	1	4	145	0	1	0	0	0	0	0	0	0	6833	1276	44	3		3	GRIA1	5	153175029	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2252262	153175029	27740231	557	125258											
FAM114A2	10827	broad.mit.edu	37	chr5	153414211	153414211	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaataagagcaattctAaattggtatttatgccaaat	6	4	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153414211	G	G	153414211	1	3	145	0	1	0	0	0	0	0	0	0	5450	377	13	5		5	FAM114A2	5	153414211	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	239182	153414211	27501049	558	125259											
GALNT10	55568	broad.mit.edu	37	chr5	153765889	153765889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtctcccgtgatggccGgtggactgttcgccgtggat	15	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153765889	T	T	153765889	3	4	145	1	0	0	0	0	1	0	0	0	6270	1116	39	1	981	1	GALNT10	5	153765889	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	351678	153765889	27149371	559	125260											
HAVCR2	84868	broad.mit.edu	37	chr5	156533888	156533888	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgccccagcagacgggcacGaggttccctggggcggctgg	17	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156533888	T	T	156533888	2	4	145	1	0	0	0	0	0	0	0	1	7040	1045	37	3		3	HAVCR2	5	156533888	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2767999	156533888	24381372	560	125261											
SLIT3	6586	broad.mit.edu	37	chr5	168100408	168100408	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctgggccctgtgctgtgGacttgacctgcattgcttac	13	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168100408	T	T	168100408	1	4	145	0	1	0	0	0	0	0	0	0	14855	1189	41	3		3	SLIT3	5	168100408	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	11566520	168100408	12814852	561	125262											
HRH2	3274	broad.mit.edu	37	chr5	175110494	175110494	+	Missense_Mutation	SNP	T	A	A													ctgtcctgcaagtggagcttTggcaaggtcttctgcaatat							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175110494	A	A	175110494	3	1	145	1	0	0	0	0	1	0	0	0	7423	1809	63	5	260	5	HRH2	5	175110494	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	7010086	175110494	5804766	562	125263	544	2									
HRH2	3274	broad.mit.edu	37	chr5	175110497	175110497	+	Silent	SNP	C	G	G													tcctgcaagtggagctttggCaaggtcttctgcaatatcta							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175110497	G	G	175110497	2	3	145	1	0	0	0	0	0	0	0	1	7423	697	25	4		4	HRH2	5	175110497	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	3	175110497	5804763	563	125264	544	2									
FAM153B	202134	broad.mit.edu	37	chr5	175533518	175533518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagacctgtgcacacaGgagacagcatggtctgaccc	12	11	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175533518	A	A	175533518	1	1	145	0	1	0	0	0	0	0	0	0	5507	1015	35	4		4	FAM153B	5	175533518	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	423021	175533518	5381742	564	125265											
UNC5A	90249	broad.mit.edu	37	chr5	176306197	176306197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcccaggaagtaccagtGctcatgccgcccccatgctc	11	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176306197	T	T	176306197	1	4	145	0	1	0	0	0	0	0	0	0	17117	1334	46	3		3	UNC5A	5	176306197	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	772679	176306197	4609063	565	125266											
DDX41	51428	broad.mit.edu	37	chr5	176941686	176941686	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcagaggtggggggcaggGagcgccagcactcactgtcg	19	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176941686	A	A	176941686	1	1	145	0	1	0	0	0	0	0	0	0	4394	1189	41	4		4	DDX41	5	176941686	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	635489	176941686	3973574	566	125267											
AGXT2L2	85007	broad.mit.edu	37	chr5	177636207	177636207	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtggcctcccatactagCatattttgtttctcagcaaa	7	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177636207	T	T	177636207	1	4	145	0	1	0	0	0	0	0	0	0	407	725	25	4		4	AGXT2L2	5	177636207	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	694521	177636207	3279053	567	125268											
ADAMTS2	9509	broad.mit.edu	37	chr5	178548492	178548492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccagcaggcagcgcggccCggagcggacgccgagctcag	17	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178548492	A	A	178548492	1	1	145	0	1	0	0	0	0	0	0	0	265	667	23	1		1	ADAMTS2	5	178548492	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	912285	178548492	2366768	568	125269											
BTNL8	79908	broad.mit.edu	37	chr5	180374389	180374389	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacaatcaaagtattaagcCtataggagaatttatagaaa	7	4	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180374389	G	G	180374389	1	3	145	0	1	0	0	0	0	0	0	0	1577	696	24	4		4	BTNL8	5	180374389	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1825897	180374389	540871	569	125270											
GMDS	2762	broad.mit.edu	37	chr6	1624688	1624688	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgcagcgggcggcgtgCgccctaagagatactcacat	13	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1624688	T	T	1624688	1	4	145	0	1	0	0	0	0	0	0	0	6550	783	27	4		4	GMDS	6	1624688	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08		1624688	169490379	570	125271											
WRNIP1	56897	broad.mit.edu	37	chr6	2770639	2770639	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggggcacacacctcccaGagagtctcctggcagggggc	15	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2770639	T	T	2770639	1	4	145	0	1	0	0	0	0	0	0	0	17530	957	33	3		3	WRNIP1	6	2770639	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1145951	2770639	168344428	571	125272											
SERPINB6	5269	broad.mit.edu	37	chr6	2949149	2949149	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacagcttagctgttaccGttctcaagtcagtggtctcg	9	12	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2949149	A	A	2949149	3	1	145	1	0	0	0	0	1	0	0	0	14218	1159	40	4	410	4	SERPINB6	6	2949149	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	178510	2949149	168165918	572	125273											
SYCP2L	221711	broad.mit.edu	37	chr6	10911082	10911082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcatttccgtgtattgctGcttttgctgatgagcatgag	10	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10911082	T	T	10911082	3	4	145	1	0	0	0	0	1	0	0	0	15552	1319	46	3	944	3	SYCP2L	6	10911082	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	7961933	10911082	160203985	573	125274											
JARID2	3720	broad.mit.edu	37	chr6	15374315	15374315	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atattgccttgctttctattCagtaactcctctcttttctt	3	11	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15374315	T	T	15374315	1	4	145	0	1	0	0	0	0	0	0	0	8015	841	29	4		4	JARID2	6	15374315	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4463233	15374315	155740752	574	125275											
JARID2	3720	broad.mit.edu	37	chr6	15501359	15501359	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accggcggctggagaaggagGtgctgatggagaaggagatc	19	6	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15501359	C	C	15501359	3	2	145	1	0	0	0	0	1	0	0	0	8015	1261	44	4	2197	4	JARID2	6	15501359	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	127044	15501359	155613708	575	125276											
GMPR	2766	broad.mit.edu	37	chr6	16295298	16295298	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgtggaaaacactatcctgGatattctcgggggactgagg	13	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16295298	C	C	16295298	3	2	145	1	0	0	0	0	1	0	0	0	6560	1174	41	4	953	4	GMPR	6	16295298	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	793939	16295298	154819769	576	125277											
RBM24	221662	broad.mit.edu	37	chr6	17284960	17284960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggtaagttgattaatcagGctttcttaagtttcagtatg	10	5	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17284960	T	T	17284960	1	4	145	0	1	0	0	0	0	0	0	0	13232	1218	42	3		3	RBM24	6	17284960	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	989662	17284960	153830107	577	125278											
NHLRC1	378884	broad.mit.edu	37	chr6	18122334	18122334	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgtcttgggcagcgtcCcccttctctccaaactgatg	8	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18122334	T	T	18122334	2	4	145	1	0	0	0	0	0	0	0	1	10500	610	22	4		4	NHLRC1	6	18122334	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	837374	18122334	152992733	578	125279											
TDP2	51567	broad.mit.edu	37	chr6	24667124	24667124	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcaccgcccctttaagcgGaacaggaggccaacgcgcgg	13	15	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24667124	C	C	24667124	1	2	145	0	1	0	0	0	0	0	0	0	15851	1189	41	4		4	TDP2	6	24667124	5'Flank	SNP	G	TCGA-49-6743-01A-11D-1855-08	6544790	24667124	146447943	579	125280											
SLC17A1	6568	broad.mit.edu	37	chr6	25830928	25830928	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgatttaaaaccgcttcCaaggataacttgctccatca	5	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25830928	T	T	25830928	1	4	145	0	1	0	0	0	0	0	0	0	14529	609	21	4		4	SLC17A1	6	25830928	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1163804	25830928	145284139	580	125281											
BTN3A3	10384	broad.mit.edu	37	chr6	26446234	26446234	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagtaccctgcttggcctCagctttactgagctgagctg	11	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26446234	T	T	26446234	1	4	145	0	1	0	0	0	0	0	0	0	1574	841	29	4		4	BTN3A3	6	26446234	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	615306	26446234	144668833	581	125282											
HIST1H2BL	8340	broad.mit.edu	37	chr6	27775547	27775547	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtcggggtggacctgcttCagcaccttgtacacgtacac	12	12	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27775547	G	G	27775547	2	3	145	1	0	0	0	0	0	0	0	1	7218	813	29	4		4	HIST1H2BL	6	27775547	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1329313	27775547	143339520	582	125283											
HIST1H2BN	8341	broad.mit.edu	37	chr6	27806822	27806822	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaccagttccaagtgagCccgcccaccgcggaacgttc	10	16	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27806822	A	A	27806822	1	1	145	0	1	0	0	0	0	0	0	0	7220	754	26	3		3	HIST1H2BN	6	27806822	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	31275	27806822	143308245	583	125284											
OR10C1	442194	broad.mit.edu	37	chr6	29408588	29408588	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcgccctaaggccagctacGatccggccactgaccctctg	9	17	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29408588	A	A	29408588	3	1	145	1	0	0	0	0	1	0	0	0	10992	1058	37	4	798	4	OR10C1	6	29408588	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1601766	29408588	141706479	584	125285											
OR2H2	7932	broad.mit.edu	37	chr6	29555766	29555766	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcttcctccttctgggcttCtctgaacacccagggctgga	11	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29555766	T	T	29555766	2	4	145	1	0	0	0	0	0	0	0	1	11096	912	32	4		4	OR2H2	6	29555766	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	147178	29555766	141559301	585	125286											
GABBR1	2550	broad.mit.edu	37	chr6	29576387	29576387	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacctcctcacctggcagacGaaaggaaactggttcctccc	8	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29576387	A	A	29576387	2	1	145	1	0	0	0	0	0	0	0	1	6215	1049	37	4		4	GABBR1	6	29576387	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	20621	29576387	141538680	586	125287											
HLA-G	3135	broad.mit.edu	37	chr6	29797448	29797448	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcatgaggggctgccGgagcccctcatgctgagatg	16	11	1	2	rs17875406		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29797448	T	T	29797448	2	4	145	1	0	0	0	0	0	0	0	1	7279	1103	39	1		1	HLA-G	6	29797448	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	221061	29797448	141317619	587	125288											
GTF2H4	2968	broad.mit.edu	37	chr6	30876868	30876868	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacacctacaatgcaggaatCtgcaggaattcttagggggc	11	9	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30876868	T	T	30876868	2	4	145	1	0	0	0	0	0	0	0	1	6930	912	32	4		4	GTF2H4	6	30876868	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1079420	30876868	140238199	588	125289											
CCHCR1	54535	broad.mit.edu	37	chr6	31118860	31118860	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagccttgctggtcaaacTggaaagagcctcctcgtgag	11	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31118860	A	A	31118860	3	1	145	1	0	0	0	0	1	0	0	0	2905	1580	55	5	1830	5	CCHCR1	6	31118860	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	241992	31118860	139996207	589	125290											
LSM2	57819	broad.mit.edu	37	chr6	31774499	31774499	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccaaccatgcgaggtccccGagggcgcccccttttgacgt	11	17	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31774499	A	A	31774499	1	1	145	0	1	0	0	0	0	0	0	0	9143	1073	37	4		4	LSM2	6	31774499	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	655639	31774499	139340568	590	125291											
NOTCH4	4855	broad.mit.edu	37	chr6	32164902	32164902	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taccttggactgccaactcgAgttccttacactattaaccc	5	14	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32164902	T	T	32164902	1	4	145	0	1	0	0	0	0	0	0	0	10646	319	11	5		5	NOTCH4	6	32164902	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	390403	32164902	138950165	591	125292											
PSMB8	5696	broad.mit.edu	37	chr6	32810063	32810063	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtgaggacaaggtggagtGaggaaagagaggttagctct	19	3	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32810063	A	A	32810063	1	1	145	0	1	0	0	0	0	0	0	0	12789	1305	45	4		4	PSMB8	6	32810063	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	645161	32810063	138305004	592	125293											
COL11A2	1302	broad.mit.edu	37	chr6	33148722	33148722	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaagaaaagaatggccaccAggtcactgctagacttaccg	9	11	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33148722	T	T	33148722	1	4	145	0	1	0	0	0	0	0	0	0	3700	203	7	5		5	COL11A2	6	33148722	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	338659	33148722	137966345	593	125294											
CDKN1A	1026	broad.mit.edu	37	chr6	36653340	36653340	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaatcacatctgtgaagcAtggtgggacactccataata	8	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36653340	T	T	36653340	1	4	145	0	1	0	0	0	0	0	0	0	3188	232	8	5		5	CDKN1A	6	36653340	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3504618	36653340	134461727	594	125295											
KIF6	221458	broad.mit.edu	37	chr6	39554039	39554039	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagaagagcccacatacatCaagattccttttctccaagg	6	11	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39554039	A	A	39554039	3	1	145	1	0	0	0	0	1	0	0	0	8378	826	29	3	1520	3	KIF6	6	39554039	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2900699	39554039	131561028	595	125296											
LRFN2	57497	broad.mit.edu	37	chr6	40400075	40400075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccacaggtttccaggtcatCgtcccgctcgagcctccgca	10	17	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40400075	A	A	40400075	3	1	145	1	0	0	0	0	1	0	0	0	9025	884	31	3	1599	3	LRFN2	6	40400075	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	846036	40400075	130714992	596	125297											
LRFN2	57497	broad.mit.edu	37	chr6	40400642	40400642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccgtcatgttggcaaagtCctggcggctgatgtggatga	14	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40400642	A	A	40400642	3	1	145	1	0	0	0	0	1	0	0	0	9025	855	30	3	2166	3	LRFN2	6	40400642	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	567	40400642	130714425	597	125298											
TRERF1	55809	broad.mit.edu	37	chr6	42232417	42232417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagcacacgacctagaaaGgaccgggaactggctcctgc	12	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42232417	A	A	42232417	1	1	145	0	1	0	0	0	0	0	0	0	16599	1015	35	4		4	TRERF1	6	42232417	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1831775	42232417	128882650	598	125299											
TBCC	6903	broad.mit.edu	37	chr6	42713854	42713854	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcttccttcctccgggCgcgctgtccgtgaggcctcc	11	17	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42713854	A	A	42713854	1	1	145	0	1	0	0	0	0	0	0	0	15753	783	27	3		3	TBCC	6	42713854	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	481437	42713854	128401213	599	125300											
PEX6	5190	broad.mit.edu	37	chr6	42934570	42934570	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggctgctgtgggtcagaagGgcatagagatcccctaccac	13	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42934570	C	C	42934570	2	2	145	1	0	0	0	0	0	0	0	1	11845	1219	43	4		4	PEX6	6	42934570	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	220716	42934570	128180497	600	125301											
KLHDC3	116138	broad.mit.edu	37	chr6	42985754	42985754	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggtgggactgagaaagaGgggaagggcaatttaggatg	19	2	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42985754	A	A	42985754	1	1	145	0	1	0	0	0	0	0	0	0	8428	1015	35	4		4	KLHDC3	6	42985754	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	51184	42985754	128129313	601	125302											
CUL9	23113	broad.mit.edu	37	chr6	43167711	43167711	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacatcgcctggcctcgatGcataaggactatgctgtggt	11	11	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43167711	A	A	43167711	3	1	145	1	0	0	0	0	1	0	0	0	4094	1319	46	4	3251	4	CUL9	6	43167711	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	181957	43167711	127947356	602	125303											
CUL9	23113	broad.mit.edu	37	chr6	43167829	43167829	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcttcgggacctggtgacaGagtgtgagaagtacgcacag	15	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43167829	C	C	43167829	3	2	145	1	0	0	0	0	1	0	0	0	4094	943	33	4	3369	4	CUL9	6	43167829	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	118	43167829	127947238	603	125304											
TTBK1	84630	broad.mit.edu	37	chr6	43251343	43251343	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcggtctgaggagttcagCgctgggggcgagctgggtct	19	8	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43251343	T	T	43251343	2	4	145	1	0	0	0	0	0	0	0	1	16802	767	27	4		4	TTBK1	6	43251343	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	83514	43251343	127863724	604	125305											
MUT	4594	broad.mit.edu	37	chr6	49403171	49403171	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatagagataaaaaatacctGaggtggtatcacccctccac	7	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49403171	A	A	49403171	4	1	145	1	0	0	0	0	0	1	0	0	10085	1299	45	4	138	4	MUT	6	49403171	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	6151828	49403171	121711896	605	125306											
CRISP2	7180	broad.mit.edu	37	chr6	49660567	49660567	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcacagccagctgtattcttCaaggaatcacagttacttag	7	10	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49660567	T	T	49660567	2	4	145	1	0	0	0	0	0	0	0	1	3912	825	29	4		4	CRISP2	6	49660567	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	257396	49660567	121454500	606	125307											
CRISP2	7180	broad.mit.edu	37	chr6	49676981	49676981	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaaaaacttctaagaggggGaataccaatataatgatctc	7	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49676981	T	T	49676981	1	4	145	0	1	0	0	0	0	0	0	0	3912	1189	41	3		3	CRISP2	6	49676981	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	16414	49676981	121438086	607	125308											
CRISP3	10321	broad.mit.edu	37	chr6	49696539	49696539	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttcaaacttttacagttActatagagatcttcgtactt	5	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49696539	G	G	49696539	2	3	145	1	0	0	0	0	0	0	0	1	3913	388	14	5		5	CRISP3	6	49696539	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	19558	49696539	121418528	608	125309											
DEFB113	245927	broad.mit.edu	37	chr6	49936521	49936521	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattccggcttgcaagcacCacgaacaagctgacattctc	8	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49936521	T	T	49936521	3	4	145	1	0	0	0	0	1	0	0	0	4441	594	21	4	126	4	DEFB113	6	49936521	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	239982	49936521	121178546	609	125310											
PKHD1	5314	broad.mit.edu	37	chr6	51524789	51524789	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaaagaaaagaagcaaaAcaagtgatatatgaattata	6	2	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51524789	G	G	51524789	1	3	145	0	1	0	0	0	0	0	0	0	12066	58	2	5		5	PKHD1	6	51524789	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1588268	51524789	119590278	610	125311											
PKHD1	5314	broad.mit.edu	37	chr6	51701291	51701292	+	Intron	DNP	GC	AT	AT													aataccaaaagccacaacttGcatgtgatacaaagatcatc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	51701292	AT	AT	51701291	1	1	145	0	1	0	0	0	0	0	0	0	12066	1334	46	4		4	PKHD1	6	51701291	Intron	DNP	GC	TCGA-49-6743-01A-11D-1855-08	176502	51701291	119413776	611	125312											
ICK	22858	broad.mit.edu	37	chr6	52876494	52876494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccttctaaaacagaacCtttgtgaatatgtgattcca	6	9	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52876494	A	A	52876494	1	1	145	0	1	0	0	0	0	0	0	0	7554	696	24	2		2	ICK	6	52876494	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1175203	52876494	118238573	612	125313											
HMGCLL1	54511	broad.mit.edu	37	chr6	55360211	55360211	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cataacacacaaagagtacaAaatacctgaagggccgtaag	8	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55360211	T	T	55360211	1	4	145	0	1	0	0	0	0	0	0	0	7297	29	1	5		5	HMGCLL1	6	55360211	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2483717	55360211	115754856	613	125314											
BMP5	653	broad.mit.edu	37	chr6	55638989	55638989	+	Frame_Shift_Del	DEL	C	-	-													accatgaatggttgttttgaCtgaggtccctgtcttcccac							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55638989	-	-	55638989	7	5	145	1	0	1	0	1	0	0	0	0	1469	564	20	0	495	0	BMP5	6	55638989	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	278778	55638989	115476078	614	125315											
COL21A1	81578	broad.mit.edu	37	chr6	56033064	56033064	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgttctgttactaagagaCgaatttggtgccagccttca	9	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56033064	T	T	56033064	3	4	145	1	0	0	0	0	1	0	0	0	3712	536	19	4	1915	4	COL21A1	6	56033064	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	394075	56033064	115082003	615	125316											
DST	667	broad.mit.edu	37	chr6	56483445	56483445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctttaatgtttgtttcaCaaagcttagcattttcttgg	7	6	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56483445	T	T	56483445	1	4	145	0	1	0	0	0	0	0	0	0	4823	478	17	4		4	DST	6	56483445	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	450381	56483445	114631622	616	125317											
BAI3	577	broad.mit.edu	37	chr6	70064141	70064141	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaggttcaggatgcatttaGatgccgattgagaaactgtc	11	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70064141	C	C	70064141	3	2	145	1	0	0	0	0	1	0	0	0	1305	942	33	4	3574	4	BAI3	6	70064141	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	13580696	70064141	101050926	617	125318											
COL19A1	1310	broad.mit.edu	37	chr6	70850659	70850659	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttcatttgggaatataaagGagtttttaaattaattatca	7	2	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70850659	T	T	70850659	1	4	145	0	1	0	0	0	0	0	0	0	3708	1189	41	3		3	COL19A1	6	70850659	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	786518	70850659	100264408	618	125319											
COL19A1	1310	broad.mit.edu	37	chr6	70850813	70850813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagagtttatttctaagagCgtttaattctattttctacc	7	6	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70850813	T	T	70850813	1	4	145	0	1	0	0	0	0	0	0	0	3708	783	27	4		4	COL19A1	6	70850813	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	154	70850813	100264254	619	125320											
COL19A1	1310	broad.mit.edu	37	chr6	70859612	70859612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggcgcccaaggaccagCtggagagccaggtattcagg	15	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70859612	A	A	70859612	3	1	145	1	0	0	0	0	1	0	0	0	3708	797	28	3	2016	3	COL19A1	6	70859612	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	8799	70859612	100255455	620	125321											
COL9A1	1297	broad.mit.edu	37	chr6	70963105	70963105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttttcaccagcaacacCctttgcaccaggaattccag	5	15	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70963105	A	A	70963105	3	1	145	1	0	0	0	0	1	0	0	0	3739	623	22	2	1070	2	COL9A1	6	70963105	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	103493	70963105	100151962	621	125322											
COL9A1	1297	broad.mit.edu	37	chr6	70976489	70976489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaccctaacaaatgcaaaaTaagtaattgtcttgagtttg	7	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70976489	A	A	70976489	1	1	145	0	1	0	0	0	0	0	0	0	3739	1421	49	5		5	COL9A1	6	70976489	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	13384	70976489	100138578	622	125323											
COL9A1	1297	broad.mit.edu	37	chr6	71009823	71009823	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgatcccactactctctgGatagctcttctagatgctgc	8	13	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71009823	T	T	71009823	2	4	145	1	0	0	0	0	0	0	0	1	3739	1164	41	3		3	COL9A1	6	71009823	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	33334	71009823	100105244	623	125324											
DPPA5	340168	broad.mit.edu	37	chr6	74063140	74063140	+	Intron	DEL	A	-	-													cagcggcgtgagtctgggggAaaatagtaagcgcccggact							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74063140	-	-	74063140	6	5	145	0	1	1	0	1	0	0	0	0	4777	261	9	0		0	DPPA5	6	74063140	Intron	DEL	A	TCGA-49-6743-01A-11D-1855-08	3053317	74063140	97051927	624	125325											
TMEM30A	55754	broad.mit.edu	37	chr6	75969092	75969092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcttccaggttgtctcctCcagggggatttctgaatttc	10	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75969092	A	A	75969092	3	1	145	1	0	0	0	0	1	0	0	0	16276	855	30	3	441	3	TMEM30A	6	75969092	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1905952	75969092	95145975	625	125326											
IMPG1	3617	broad.mit.edu	37	chr6	76712738	76712738	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaatgaattttgcaagacaGatgttgagaaaggatgtttg	12	2	0	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76712738	A	A	76712738	1	1	145	0	1	0	0	0	0	0	0	0	7798	957	33	4		4	IMPG1	6	76712738	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	743646	76712738	94402329	626	125327											
ELOVL4	6785	broad.mit.edu	37	chr6	80626291	80626291	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatgatatgggagtttttcCtcactgtcaacaacagttaa	7	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80626291	T	T	80626291	1	4	145	0	1	0	0	0	0	0	0	0	5118	696	24	4		4	ELOVL4	6	80626291	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	3913553	80626291	90488776	627	125328											
UBE2CBP	90025	broad.mit.edu	37	chr6	83733734	83733734	+	Nonsense_Mutation	SNP	C	A	A													agatgactgaataattatctCtgtcatataaaacttggtgg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83733734	A	A	83733734	4	1	145	1	0	0	0	0	0	1	0	0	16973	922	32	3	498	3	UBE2CBP	6	83733734	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3107443	83733734	87381333	628	125329	545	2									
UBE2CBP	90025	broad.mit.edu	37	chr6	83733741	83733741	+	Nonsense_Mutation	SNP	A	T	T													tgaataattatctctgtcatAtaaaacttggtggtttctag							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83733741	T	T	83733741	4	4	145	1	0	0	0	0	0	1	0	0	16973	456	16	5	505	5	UBE2CBP	6	83733741	Nonsense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	7	83733741	87381326	629	125330	545	2									
DOPEY1	23033	broad.mit.edu	37	chr6	83829494	83829494	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taacaacggtgctatcatagGacccagaagcacaagacaca	8	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83829494	A	A	83829494	3	1	145	1	0	0	0	0	1	0	0	0	4747	1174	41	4	934	4	DOPEY1	6	83829494	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	95753	83829494	87285573	630	125331											
SNAP91	9892	broad.mit.edu	37	chr6	84290252	84290252	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggactgggtggtaccattGagacaggtgcaggctgccca	15	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84290252	C	C	84290252	4	2	145	1	0	0	0	0	0	1	0	0	14947	1294	45	4	531	4	SNAP91	6	84290252	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	460758	84290252	86824815	631	125332											
TBX18	9096	broad.mit.edu	37	chr6	85446331	85446331	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaccacagagagtttctttCcacatagcttttaaaaaaga	5	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85446331	A	A	85446331	1	1	145	0	1	0	0	0	0	0	0	0	15775	870	30	3		3	TBX18	6	85446331	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	1156079	85446331	85668736	632	125333											
TBX18	9096	broad.mit.edu	37	chr6	85448392	85448392	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaccagcagcaagcatctCaaaacaacactgatattgac	5	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85448392	G	G	85448392	1	3	145	0	1	0	0	0	0	0	0	0	15775	841	29	4		4	TBX18	6	85448392	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2061	85448392	85666675	633	125334											
ZNF292	23036	broad.mit.edu	37	chr6	87969729	87969729	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctttgctgcctttacgataCagcaaaacttgattctccat	6	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87969729	G	G	87969729	3	3	145	1	0	0	0	0	1	0	0	0	17952	479	17	4	6412	4	ZNF292	6	87969729	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2521337	87969729	83145338	634	125335											
GABRR2	2570	broad.mit.edu	37	chr6	89977501	89977501	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttagggattcatccccattCttccagtacagcattagatc	6	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89977501	G	G	89977501	3	3	145	1	0	0	0	0	1	0	0	0	6237	912	32	4	780	4	GABRR2	6	89977501	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2007772	89977501	81137566	635	125336											
GJA10	84694	broad.mit.edu	37	chr6	90604176	90604176	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctgtatatttcagacatTagtctttaaccatgggggac	8	7	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90604176	C	C	90604176	1	2	145	0	1	0	0	0	0	0	0	0	6465	1769	61	5		5	GJA10	6	90604176	5'Flank	SNP	T	TCGA-49-6743-01A-11D-1855-08	626675	90604176	80510891	636	125337											
C6orf167	253714	broad.mit.edu	37	chr6	97616111	97616111	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtgcccatgatttcacaaGaattcctaacaaagaagaga	7	8	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97616111	A	A	97616111	3	1	145	1	0	0	0	0	1	0	0	0	2365	942	33	4	910	4	C6orf167	6	97616111	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	7011935	97616111	73498956	637	125338											
SIM1	6492	broad.mit.edu	37	chr6	100901485	100901485	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagcagctattgggctctGagagggccacgtgcagtccg	15	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100901485	A	A	100901485	1	1	145	0	1	0	0	0	0	0	0	0	14436	1305	45	4		4	SIM1	6	100901485	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3285374	100901485	70213582	638	125339											
GRIK2	2898	broad.mit.edu	37	chr6	101878809	101878809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatgaggtccaggtgcaGgatggcctagggaaaggcat	15	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101878809	T	T	101878809	1	4	145	0	1	0	0	0	0	0	0	0	6840	1015	35	2		2	GRIK2	6	101878809	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	977324	101878809	69236258	639	125340											
NR2E1	7101	broad.mit.edu	37	chr6	108497812	108497812	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccgccgcgcactttccctCggcggcgctccctgcgccgg	14	20	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108497812	T	T	108497812	3	4	145	1	0	0	0	0	1	0	0	0	10720	893	31	4	379	4	NR2E1	6	108497812	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	6619003	108497812	62617255	640	125341											
NR2E1	7101	broad.mit.edu	37	chr6	108499305	108499305	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttccctacccagtaccccCatgaagtgaatgggacccca	7	16	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108499305	G	G	108499305	3	3	145	1	0	0	0	0	1	0	0	0	10720	594	21	4	520	4	NR2E1	6	108499305	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1493	108499305	62615762	641	125342											
FIG4	9896	broad.mit.edu	37	chr6	110113828	110113828	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctatatggaattaacctctCagatggcctctcagaagaag	9	9	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110113828	G	G	110113828	4	3	145	1	0	0	0	0	0	1	0	0	5945	838	29	4	2502	4	FIG4	6	110113828	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1614523	110113828	61001239	642	125343											
REV3L	5980	broad.mit.edu	37	chr6	111632432	111632432	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagacttatatctctcgtttCaaatagcagctttagagaac	6	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111632432	G	G	111632432	3	3	145	1	0	0	0	0	1	0	0	0	13348	835	29	4	773	4	REV3L	6	111632432	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1518604	111632432	59482635	643	125344											
REV3L	5980	broad.mit.edu	37	chr6	111701255	111701255	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccaaactaagctccatttCctctttttcaatctgtggtt	4	12	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111701255	T	T	111701255	3	4	145	1	0	0	0	0	1	0	0	0	13348	864	30	4	8096	4	REV3L	6	111701255	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	68823	111701255	59413812	644	125345											
FYN	2534	broad.mit.edu	37	chr6	112041086	112041086	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggtgagtccttggccccCggctgcgtggaagttgttgt	16	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112041086	T	T	112041086	3	4	145	1	0	0	0	0	1	0	0	0	6186	652	23	4	1648	4	FYN	6	112041086	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	339831	112041086	59073981	645	125346											
LAMA4	3910	broad.mit.edu	37	chr6	112466086	112466086	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtcgcttctgctcaacCgtacgaagctgatccaggag	12	12	2	1	rs142559688	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112466086	A	A	112466086	2	1	145	1	0	0	0	0	0	0	0	1	8680	639	23	1		1	LAMA4	6	112466086	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	425000	112466086	58648981	646	125347											
FAM26F	441168	broad.mit.edu	37	chr6	116779575	116779575	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagacccctggccatccctGcagccaggcccccggatccc	9	22	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116779575	T	T	116779575	1	4	145	0	1	0	0	0	0	0	0	0	5602	1334	46	3		3	FAM26F	6	116779575	5'Flank	SNP	G	TCGA-49-6743-01A-11D-1855-08	4313489	116779575	54335492	647	125348											
KPNA5	3841	broad.mit.edu	37	chr6	117037484	117037484	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccaaactttagtaaggtAtgagtaaaatacacaaatta	5	7	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117037484	G	G	117037484	1	3	145	0	1	0	0	0	0	0	0	0	8504	464	16	5		5	KPNA5	6	117037484	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	257909	117037484	54077583	648	125349											
RFX6	222546	broad.mit.edu	37	chr6	117245729	117245729	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctccttgtaaagtgttgcgAgatggtcacaaagataactg	11	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117245729	T	T	117245729	1	4	145	0	1	0	0	0	0	0	0	0	13375	319	11	5		5	RFX6	6	117245729	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	208245	117245729	53869338	649	125350											
ROS1	6098	broad.mit.edu	37	chr6	117681505	117681505	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agattttagaaaacaaatacCtgatgttgtagactttacaa	6	5	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117681505	T	T	117681505	3	4	145	1	0	0	0	0	1	0	0	0	13642	695	24	4	3686	4	ROS1	6	117681505	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	435776	117681505	53433562	650	125351											
ROS1	6098	broad.mit.edu	37	chr6	117710495	117710495	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaaggccagtaaccacacTggggacagagcactcactgg	12	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117710495	A	A	117710495	1	1	145	0	1	0	0	0	0	0	0	0	13642	1595	55	5		5	ROS1	6	117710495	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	28990	117710495	53404572	651	125352											
C6orf204	387119	broad.mit.edu	37	chr6	118953648	118953648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaacaggaagttccaatgCcagtgtctccactgtcagaa	9	11	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118953648	A	A	118953648	3	1	145	1	0	0	0	0	1	0	0	0	2376	739	26	3	2319	3	C6orf204	6	118953648	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1243153	118953648	52161419	652	125353											
GJA1	2697	broad.mit.edu	37	chr6	121768044	121768044	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgacaaggttcaagcctaCtcaactgctggagggaaggt	12	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121768044	T	T	121768044	2	4	145	1	0	0	0	0	0	0	0	1	6464	576	20	4		4	GJA1	6	121768044	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	2814396	121768044	49347023	653	125354											
NKAIN2	154215	broad.mit.edu	37	chr6	124125384	124125384	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtgcacgcttatctttatCtgtggcatgcaactggtaag	11	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124125384	G	G	124125384	3	3	145	1	0	0	0	0	1	0	0	0	10531	903	32	4	41	4	NKAIN2	6	124125384	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2357340	124125384	46989683	654	125355											
NKAIN2	154215	broad.mit.edu	37	chr6	125144452	125144452	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcctcctgcatttcatgaaGagcaagaagcaactgagttt	10	9	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125144452	C	C	125144452	1	2	145	0	1	0	0	0	0	0	0	0	10531	957	33	4		4	NKAIN2	6	125144452	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	1019068	125144452	45970615	655	125356											
RSPO3	84870	broad.mit.edu	37	chr6	127440470	127440470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacgcgtttgctccctccCgccgcgttcacctgtcgggt	10	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127440470	A	A	127440470	1	1	145	0	1	0	0	0	0	0	0	0	13822	667	23	1		1	RSPO3	6	127440470	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2296018	127440470	43674597	656	125357											
EPB41L2	2037	broad.mit.edu	37	chr6	131186823	131186823	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaatgcttaacttctgttaTgttgtcagagaagatccccg	9	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131186823	C	C	131186823	1	2	145	0	1	0	0	0	0	0	0	0	5195	1479	51	5		5	EPB41L2	6	131186823	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	3746353	131186823	39928244	657	125358											
ENPP1	5167	broad.mit.edu	37	chr6	132168987	132168987	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaagctgtgccaaagaAggtaattaggtgtgtgtgtg	13	5	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132168987	T	T	132168987	3	4	145	1	0	0	0	0	1	0	0	0	5171	86	3	5	318	5	ENPP1	6	132168987	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	982164	132168987	38946080	658	125359											
ENPP1	5167	broad.mit.edu	37	chr6	132171081	132171081	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattcgttgatgtttactttGaattatataatgattagaaa	6	2	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132171081	A	A	132171081	1	1	145	0	1	0	0	0	0	0	0	0	5171	1305	45	4		4	ENPP1	6	132171081	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2094	132171081	38943986	659	125360											
TAAR1	134864	broad.mit.edu	37	chr6	132966315	132966315	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggaataatgtagtgaagAaaagggtccatgactgtaca	13	4	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132966315	T	T	132966315	3	4	145	1	0	0	0	0	1	0	0	0	15608	243	9	5	195	5	TAAR1	6	132966315	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	795234	132966315	38148752	660	125361											
VNN1	8876	broad.mit.edu	37	chr6	133004445	133004445	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcttcagactaaacaagCgtccgtcagttgacacctga	9	11	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133004445	T	T	133004445	3	4	145	1	0	0	0	0	1	0	0	0	17309	768	27	4	169	4	VNN1	6	133004445	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	38130	133004445	38110622	661	125362											
EYA4	2070	broad.mit.edu	37	chr6	133783490	133783490	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggccctatccacacattcTttctacaccagcagctcaaa	4	15	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133783490	A	A	133783490	3	1	145	1	0	0	0	0	1	0	0	0	5374	1609	56	5	481	5	EYA4	6	133783490	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	779045	133783490	37331577	662	125363											
KIAA1244	57221	broad.mit.edu	37	chr6	138628268	138628268	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgagtttgtctattctGgtttttccttttcactaaaa	7	6	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138628268	T	T	138628268	1	4	145	0	1	0	0	0	0	0	0	0	8287	1363	47	2		2	KIAA1244	6	138628268	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4844778	138628268	32486799	663	125364											
PHACTR2	9749	broad.mit.edu	37	chr6	144032928	144032928	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataatgtaagtctcttgcttCtagtctgtttccccagaatg	7	9	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144032928	T	T	144032928	1	4	145	0	1	0	0	0	0	0	0	0	11905	928	32	4		4	PHACTR2	6	144032928	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5404660	144032928	27082139	664	125365											
STX11	8676	broad.mit.edu	37	chr6	144508051	144508051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaaggccatcaaggcccGgggcgaggtcatccactgca	13	15	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144508051	T	T	144508051	3	4	145	1	0	0	0	0	1	0	0	0	15455	1116	39	1	289	1	STX11	6	144508051	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	475123	144508051	26607016	665	125366											
LATS1	9113	broad.mit.edu	37	chr6	149982847	149982847	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttacaaatcctcattaCatttatttactagtgtgtta	3	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149982847	A	A	149982847	1	1	145	0	1	0	0	0	0	0	0	0	8718	493	17	3		3	LATS1	6	149982847	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	5474796	149982847	21132220	666	125367											
AKAP12	9590	broad.mit.edu	37	chr6	151626887	151626887	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcttttccatagctcctAcagaagaatggtcagctgtc	8	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151626887	G	G	151626887	2	3	145	1	0	0	0	0	0	0	0	1	448	378	14	5		5	AKAP12	6	151626887	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	1644040	151626887	19488180	667	125368											
SYNE1	23345	broad.mit.edu	37	chr6	152738281	152738281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtacttaaaggtcatctacAgtgaatcttagaaaattcac	6	7	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152738281	T	T	152738281	1	4	145	0	1	0	0	0	0	0	0	0	15564	203	7	5		5	SYNE1	6	152738281	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1111394	152738281	18376786	668	125369											
SYNE1	23345	broad.mit.edu	37	chr6	152780041	152780041	+	Frame_Shift_Del	DEL	G	-	-													cagctgctgagactcataaaGgagtggggagtaacattctt							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152780041	-	-	152780041	7	5	145	1	0	1	0	1	0	0	0	0	15564	1000	35	0	24547	0	SYNE1	6	152780041	Frame_Shift_Del	DEL	G	TCGA-49-6743-01A-11D-1855-08	41760	152780041	18335026	669	125370											
SYNE1	23345	broad.mit.edu	37	chr6	152826241	152826241	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctccagctttctggcctCcaatagaatcttggaagtca	7	11	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152826241	A	A	152826241	1	1	145	0	1	0	0	0	0	0	0	0	15564	870	30	3		3	SYNE1	6	152826241	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	46200	152826241	18288826	670	125371											
SYNE1	23345	broad.mit.edu	37	chr6	152832221	152832221	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagctatatcggtggagttAatgttgactaatttaatctg	9	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152832221	G	G	152832221	2	3	145	1	0	0	0	0	0	0	0	1	15564	358	13	5		5	SYNE1	6	152832221	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	5980	152832221	18282846	671	125372											
TFB1M	51106	broad.mit.edu	37	chr6	155618088	155618088	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaatgttaaaacttaccTctgccacttccttttgaaaa	3	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155618088	A	A	155618088	3	1	145	1	0	0	0	0	1	0	0	0	15916	1565	54	5	511	5	TFB1M	6	155618088	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	2785867	155618088	15496979	672	125373											
ARID1B	57492	broad.mit.edu	37	chr6	157529010	157529010	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctgtgatgtactgtttcaGattgggcagttatgacataa	10	5	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157529010	C	C	157529010	3	2	145	1	0	0	0	0	1	0	0	0	916	933	33	4	6813	4	ARID1B	6	157529010	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1910922	157529010	13586057	673	125374											
SYNJ2	8871	broad.mit.edu	37	chr6	158482917	158482917	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagctaaagcacgtcctgCggcgagtcaccttggttagc	11	13	1	0	rs139733946	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158482917	T	T	158482917	1	4	145	0	1	0	0	0	0	0	0	0	15572	783	27	4		4	SYNJ2	6	158482917	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	953907	158482917	12632150	674	125375											
TCP1	6950	broad.mit.edu	37	chr6	160201220	160201220	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggcattttaataaaataAgtctacataaagttccctta	4	6	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160201220	G	G	160201220	1	3	145	0	1	0	0	0	0	0	0	0	15831	87	3	5		5	TCP1	6	160201220	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1718303	160201220	10913847	675	125376											
PDE10A	10846	broad.mit.edu	37	chr6	165752902	165752902	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttcaaattgctatactaTtttgatattattgaattatt	3	3	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165752902	G	G	165752902	1	3	145	0	1	0	0	0	0	0	0	0	11724	1508	52	5		5	PDE10A	6	165752902	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	5551682	165752902	5362165	676	125377											
PDE10A	10846	broad.mit.edu	37	chr6	165809841	165809841	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagagacgcacgggaagggtGaattgcatgagaccttgcca	14	9	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165809841	A	A	165809841	2	1	145	1	0	0	0	0	0	0	0	1	11724	1281	45	4		4	PDE10A	6	165809841	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	56939	165809841	5305226	677	125378											
PDE10A	10846	broad.mit.edu	37	chr6	165843907	165843907	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaacttccagaatactaaTtaccttatttattgaaagaa	3	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165843907	C	C	165843907	1	2	145	0	1	0	0	0	0	0	0	0	11724	1508	52	5		5	PDE10A	6	165843907	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	34066	165843907	5271160	678	125379											
RNASET2	8635	broad.mit.edu	37	chr6	167344531	167344531	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaaacataactgtctaaCctggcttggtggaaggcact	10	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167344531	A	A	167344531	5	1	145	1	0	0	0	0	0	0	1	0	13529	521	18	3	210	3	RNASET2	6	167344531	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	1500624	167344531	3770536	679	125380											
GPR31	2853	broad.mit.edu	37	chr6	167570787	167570787	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaggcaggagagtgcttccTgccagatgatgctgaaggag	16	7	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167570787	A	A	167570787	3	1	145	1	0	0	0	0	1	0	0	0	6752	1580	55	5	429	5	GPR31	6	167570787	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	226256	167570787	3544280	680	125381											
THBS2	7058	broad.mit.edu	37	chr6	169620156	169620156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcttggaatgtgcaggGggctcatgtgtggtattgtg	18	5	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169620156	T	T	169620156	1	4	145	0	1	0	0	0	0	0	0	0	15977	1247	43	2		2	THBS2	6	169620156	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2049369	169620156	1494911	681	125382											
THBS2	7058	broad.mit.edu	37	chr6	169635043	169635043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagctcagagcaagaccCggggtggagaacgtgagttg	19	7	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169635043	A	A	169635043	1	1	145	0	1	0	0	0	0	0	0	0	15977	667	23	1		1	THBS2	6	169635043	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	14887	169635043	1480024	682	125383											
THBS2	7058	broad.mit.edu	37	chr6	169637359	169637359	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actggggagttgcagagacgGatgcgtgtgatattgccaac	15	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169637359	A	A	169637359	2	1	145	1	0	0	0	0	0	0	0	1	15977	1164	41	4		4	THBS2	6	169637359	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2316	169637359	1477708	683	125384											
C6orf70	55780	broad.mit.edu	37	chr6	170179308	170179308	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtcccctgtgctcagcctGatactgttactcattgcgct	8	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170179308	A	A	170179308	2	1	145	1	0	0	0	0	0	0	0	1	2394	1277	45	4		4	C6orf70	6	170179308	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	541949	170179308	935759	684	125385											
INTS1	26173	broad.mit.edu	37	chr7	1524941	1524941	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctgctgcagggccagGgctgtggtgctcctgacgct	14	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1524941	A	A	1524941	2	1	145	1	0	0	0	0	0	0	0	1	7845	1219	43	4		4	INTS1	7	1524941	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08		1524941	157613722	685	125386											
TMEM184A	202915	broad.mit.edu	37	chr7	1586636	1586636	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcttctccaggctccggctCttcctgctcccgccggagcc	10	20	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1586636	G	G	1586636	3	3	145	1	0	0	0	0	1	0	0	0	16227	912	32	4	51	4	TMEM184A	7	1586636	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	61695	1586636	157552027	686	125387											
SDK1	221935	broad.mit.edu	37	chr7	4150307	4150307	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacaggtgggagctatcGgcgacgaggaggagtgggtc	19	8	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4150307	A	A	4150307	3	1	145	1	0	0	0	0	1	0	0	0	14081	1116	39	4	3427	4	SDK1	7	4150307	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2563671	4150307	154988356	687	125388											
SDK1	221935	broad.mit.edu	37	chr7	4152959	4152959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacattgttgggccgagccCctacagtccgtcttcccggg	12	14	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4152959	A	A	4152959	3	1	145	1	0	0	0	0	1	0	0	0	14081	623	22	2	3567	2	SDK1	7	4152959	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2652	4152959	154985704	688	125389											
RADIL	55698	broad.mit.edu	37	chr7	4917240	4917241	+	Missense_Mutation	DNP	CG	AA	AA													ctgtggcccccctcacctgcCgtgatggtgtccacctcctt							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	4917241	AA	AA	4917240	3	1	145	1	0	0	0	0	1	0	0	0	13105	639	23	1	2752	1	RADIL	7	4917240	Missense_Mutation	DNP	CG	TCGA-49-6743-01A-11D-1855-08	764281	4917240	154221423	689	125390											
C7orf28B	221960	broad.mit.edu	37	chr7	6865848	6865848	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccgccccggcccccacctCgggagcctcccacggcccgc	10	25	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6865848	T	T	6865848	1	4	145	0	1	0	0	0	0	0	0	0	2409	899	31	4		4	C7orf28B	7	6865848	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	1948608	6865848	152272815	690	125391											
NXPH1	30010	broad.mit.edu	37	chr7	8791441	8791441	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcctgaggaattaaagGtcatatgacagggctgttac	12	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8791441	T	T	8791441	1	4	145	0	1	0	0	0	0	0	0	0	10885	1276	44	3		3	NXPH1	7	8791441	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	1925593	8791441	150347222	691	125392											
THSD7A	221981	broad.mit.edu	37	chr7	11501711	11501711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgcagtctcggccccCgttggctggcagctgaatga	13	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11501711	A	A	11501711	3	1	145	1	0	0	0	0	1	0	0	0	16002	652	23	1	2617	1	THSD7A	7	11501711	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2710270	11501711	147636952	692	125393											
MEOX2	4223	broad.mit.edu	37	chr7	15652021	15652021	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttatatcataagtgCgcatgctctgagctgtggtc	10	9	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15652021	T	T	15652021	2	4	145	1	0	0	0	0	0	0	0	1	9567	755	27	4		4	MEOX2	7	15652021	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	4150310	15652021	143486642	693	125394											
HDAC9	9734	broad.mit.edu	37	chr7	18705895	18705895	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcaccttgaggaagcagaGgaagagcttcagggggacca	15	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18705895	A	A	18705895	2	1	145	1	0	0	0	0	0	0	0	1	7081	991	35	4		4	HDAC9	7	18705895	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	3053874	18705895	140432768	694	125395											
ABCB5	340273	broad.mit.edu	37	chr7	20739388	20739388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatatacagaaattttcaCtttttctgtttcttttatat	3	6	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20739388	A	A	20739388	1	1	145	0	1	0	0	0	0	0	0	0	44	580	20	3		3	ABCB5	7	20739388	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2033493	20739388	138399275	695	125396											
DNAH11	8701	broad.mit.edu	37	chr7	21631062	21631062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaccatgaggggctgggCcaggtgcgtgctacctccca	15	13	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21631062	A	A	21631062	3	1	145	1	0	0	0	0	1	0	0	0	4639	739	26	3	2588	3	DNAH11	7	21631062	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	891674	21631062	137507601	696	125397											
DNAH11	8701	broad.mit.edu	37	chr7	21781567	21781567	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatttcacagtgtttgcatTcaattttccatctttggatg	6	8	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21781567	G	G	21781567	3	3	145	1	0	0	0	0	1	0	0	0	4639	1783	62	5	8153	5	DNAH11	7	21781567	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	150505	21781567	137357096	697	125398											
KLHL7	55975	broad.mit.edu	37	chr7	23180294	23180294	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagatttatgaaatttactCaactaattttcctgaagtca	4	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23180294	G	G	23180294	1	3	145	0	1	0	0	0	0	0	0	0	8465	841	29	4		4	KLHL7	7	23180294	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1398727	23180294	135958369	698	125399											
HOXA3	3200	broad.mit.edu	37	chr7	27147572	27147572	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcttcctgaattcttcCctgagaaggatggtggccgg	15	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27147572	A	A	27147572	4	1	145	1	0	0	0	0	0	1	0	0	7360	632	22	2	41	2	HOXA3	7	27147572	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3967278	27147572	131991091	699	125400											
TAX1BP1	8887	broad.mit.edu	37	chr7	27831774	27831774	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctgcatactgcacgcttGgaaaacgagaaagtgaaaaa	10	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27831774	A	A	27831774	2	1	145	1	0	0	0	0	0	0	0	1	15713	1339	47	4		4	TAX1BP1	7	27831774	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	684202	27831774	131306889	700	125401											
SCRN1	9805	broad.mit.edu	37	chr7	29966033	29966033	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgacctcgcccgcccgcctCcgcctccgcctctgtggccc	9	24	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29966033	T	T	29966033	1	4	145	0	1	0	0	0	0	0	0	0	14051	870	30	4		4	SCRN1	7	29966033	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2134259	29966033	129172630	701	125402											
FAM188B	84182	broad.mit.edu	37	chr7	30931616	30931616	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacggctcagaccccatccTgtgaccgttggatgtgggta	13	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30931616	A	A	30931616	3	1	145	1	0	0	0	0	1	0	0	0	5561	1580	55	5	2340	5	FAM188B	7	30931616	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	965583	30931616	128207047	702	125403											
CCDC129	223075	broad.mit.edu	37	chr7	31683082	31683082	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgagatggaaaaccttcctCtaaatactggcagctccagg	9	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31683082	G	G	31683082	3	3	145	1	0	0	0	0	1	0	0	0	2790	912	32	4	2136	4	CCDC129	7	31683082	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	751466	31683082	127455581	703	125404											
AOAH	313	broad.mit.edu	37	chr7	36579924	36579924	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaatcttcaaactgataCcgagaggatgatatctgttg	9	6	3	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36579924	T	T	36579924	5	4	145	1	0	0	0	0	0	0	1	0	728	521	18	4	785	4	AOAH	7	36579924	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	4896842	36579924	122558739	704	125405											
SFRP4	6424	broad.mit.edu	37	chr7	37947142	37947142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaatgttcttcttgggaCtggctggtttgggagcagga	14	5	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37947142	A	A	37947142	3	1	145	1	0	0	0	0	1	0	0	0	14276	565	20	3	64	3	SFRP4	7	37947142	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1367218	37947142	121191521	705	125406											
AMPH	273	broad.mit.edu	37	chr7	38500825	38500825	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctttagggctagcccctGagagtccttccaccatggga	10	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38500825	A	A	38500825	1	1	145	0	1	0	0	0	0	0	0	0	588	1305	45	4		4	AMPH	7	38500825	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	553683	38500825	120637838	706	125407											
BLVRA	644	broad.mit.edu	37	chr7	43843411	43843411	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaaaggaagatcagtatatGaaaatgacagtgtgtctgga	12	4	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43843411	T	T	43843411	3	4	145	1	0	0	0	0	1	0	0	0	1457	1290	45	3	619	3	BLVRA	7	43843411	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	5342586	43843411	115295252	707	125408											
NPC1L1	29881	broad.mit.edu	37	chr7	44579390	44579390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtctccctggaagttgagCcagcgctgggcattgcaaag	14	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44579390	A	A	44579390	3	1	145	1	0	0	0	0	1	0	0	0	10666	740	26	3	3549	3	NPC1L1	7	44579390	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	735979	44579390	114559273	708	125409											
ADCY1	107	broad.mit.edu	37	chr7	45743081	45743081	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacttcctcatgtccaaccCtcggaacatggtgagcaccc	8	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45743081	T	T	45743081	3	4	145	1	0	0	0	0	1	0	0	0	292	681	24	4	2619	4	ADCY1	7	45743081	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1163691	45743081	113395582	709	125410											
PKD1L1	168507	broad.mit.edu	37	chr7	47866971	47866971	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggcagcccgtgtgcgactCtctctcctcatcctctgtct	9	16	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47866971	T	T	47866971	2	4	145	1	0	0	0	0	0	0	0	1	12059	912	32	4		4	PKD1L1	7	47866971	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	2123890	47866971	111271692	710	125411											
SUN3	256979	broad.mit.edu	37	chr7	48048526	48048526	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctgggagtgaaattttgAgttatttcagggagtaactt	11	3	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48048526	T	T	48048526	1	4	145	0	1	0	0	0	0	0	0	0	15511	319	11	5		5	SUN3	7	48048526	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	181555	48048526	111090137	711	125412											
C7orf57	136288	broad.mit.edu	37	chr7	48080877	48080877	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatactctggtagaggcctaGaggccaccccgacacacagc	11	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48080877	T	T	48080877	1	4	145	0	1	0	0	0	0	0	0	0	2429	957	33	3		3	C7orf57	7	48080877	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	32351	48080877	111057786	712	125413											
GRB10	2887	broad.mit.edu	37	chr7	50660724	50660724	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagctggtaaaagtcaacCagctggatcaggtcagagaa	11	8	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50660724	A	A	50660724	2	1	145	1	0	0	0	0	0	0	0	1	6822	581	21	2		2	GRB10	7	50660724	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	2579847	50660724	108477939	713	125414											
POM121L12	285877	broad.mit.edu	37	chr7	53103859	53103859	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccccgcaggccgccccgcCgcccaggagctcctggaccc	12	23	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103859	T	T	53103859	2	4	145	1	0	0	0	0	0	0	0	1	12336	639	23	4		4	POM121L12	7	53103859	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	2443135	53103859	106034804	714	125415											
EGFR	1956	broad.mit.edu	37	chr7	55240712	55240712	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgccactgggatggtgggGgccctcctcttgctgctggt	15	12	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55240712	T	T	55240712	2	4	145	1	0	0	0	0	0	0	0	1	5007	1219	43	2		2	EGFR	7	55240712	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2136853	55240712	103897951	715	125416											
SEPT14	346288	broad.mit.edu	37	chr7	55873029	55873029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcaactcttcttcttcCctctgacattgatcatagaa	4	11	6	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55873029	A	A	55873029	3	1	145	1	0	0	0	0	1	0	0	0	14176	622	22	2	265	2	SEPT14	7	55873029	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	632317	55873029	103265634	716	125417											
ZNF479	90827	broad.mit.edu	37	chr7	57188189	57188189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcttgtggtcagtgagGgttgaggatacgctaaaggc	14	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188189	T	T	57188189	2	4	145	1	0	0	0	0	0	0	0	1	18060	1219	43	2		2	ZNF479	7	57188189	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1315160	57188189	101950474	717	125418											
TYW1	55253	broad.mit.edu	37	chr7	66548534	66548534	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcagtttaaaggtatttaTcttccctctacaaaggaatg	7	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66548534	A	A	66548534	1	1	145	0	1	0	0	0	0	0	0	0	16944	1450	50	5		5	TYW1	7	66548534	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	9360345	66548534	92590129	718	125419											
CALN1	83698	broad.mit.edu	37	chr7	71571253	71571253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagccgttcccatcccggtCcagaacccgaaaggcctctc	9	17	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71571253	A	A	71571253	3	1	145	1	0	0	0	0	1	0	0	0	2617	855	30	3	530	3	CALN1	7	71571253	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5022719	71571253	87567410	719	125420											
BAZ1B	9031	broad.mit.edu	37	chr7	72884773	72884773	+	Frame_Shift_Del	DEL	C	-	-													ttctcagcagctgctttgtgCttccgtattcgttcttcttc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72884773	-	-	72884773	7	5	145	1	0	1	0	1	0	0	0	0	1335	796	28	0	1865	0	BAZ1B	7	72884773	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	1313520	72884773	86253890	720	125421											
ELN	2006	broad.mit.edu	37	chr7	73459480	73459480	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaggtcagctgggggacccGaggaggggaggggttcccag	22	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73459480	A	A	73459480	1	1	145	0	1	0	0	0	0	0	0	0	5113	1073	37	4		4	ELN	7	73459480	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	574707	73459480	85679183	721	125422											
HIP1	3092	broad.mit.edu	37	chr7	75187482	75187482	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcttaccttccgcagcaGgtcagcgtggttctgaacca	12	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75187482	A	A	75187482	2	1	145	1	0	0	0	0	0	0	0	1	7181	991	35	4		4	HIP1	7	75187482	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1728002	75187482	83951181	722	125423											
PION	54103	broad.mit.edu	37	chr7	76940745	76940745	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctgcatccacattgtcaTgtccttcaaaaggatacagg	7	10	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76940745	A	A	76940745	3	1	145	1	0	0	0	0	1	0	0	0	12029	1464	51	5	73	5	PION	7	76940745	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1753263	76940745	82197918	723	125424											
MAGI2	9863	broad.mit.edu	37	chr7	78755015	78755015	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatgaagggaggaaacttTggaggcagaagctctggccc	15	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78755015	C	C	78755015	1	2	145	0	1	0	0	0	0	0	0	0	9283	1827	63	5		5	MAGI2	7	78755015	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1814270	78755015	80383648	724	125425											
CACNA2D1	781	broad.mit.edu	37	chr7	81693659	81693659	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtctttaggagatgcagctCcttggatgtacctgaaacaa	10	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81693659	T	T	81693659	3	4	145	1	0	0	0	0	1	0	0	0	2574	855	30	4	2659	4	CACNA2D1	7	81693659	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2938644	81693659	77445004	725	125426											
CACNA2D1	781	broad.mit.edu	37	chr7	81714110	81714110	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatatcgagctaggccagtGgcactgccaaaaacctgcca	9	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81714110	C	C	81714110	2	2	145	1	0	0	0	0	0	0	0	1	2574	1335	47	4		4	CACNA2D1	7	81714110	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	20451	81714110	77424553	726	125427											
PCLO	27445	broad.mit.edu	37	chr7	82583767	82583767	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtagcactttctgaaggctCcgagtaggtcaaaatcagcg	11	9	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82583767	A	A	82583767	4	1	145	1	0	0	0	0	0	1	0	0	11677	864	30	3	9027	3	PCLO	7	82583767	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	869657	82583767	76554896	727	125428											
PCLO	27445	broad.mit.edu	37	chr7	82583852	82583852	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatattcatcctcaatttcTtctgttgaaaaatgttgggt	6	7	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82583852	C	C	82583852	2	2	145	1	0	0	0	0	0	0	0	1	11677	1606	56	5		5	PCLO	7	82583852	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	85	82583852	76554811	728	125429											
PCLO	27445	broad.mit.edu	37	chr7	82784218	82784218	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttagggaggccttgtgaaGgaggctgttttgcagatgga	16	4	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82784218	A	A	82784218	3	1	145	1	0	0	0	0	1	0	0	0	11677	1000	35	4	13802	4	PCLO	7	82784218	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	200366	82784218	76354445	729	125430											
PCLO	27445	broad.mit.edu	37	chr7	82784423	82784423	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttgctgggccaggctgttGaggtgggggttttgttgagc	18	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82784423	A	A	82784423	4	1	145	1	0	0	0	0	0	1	0	0	11677	1299	45	4	14007	4	PCLO	7	82784423	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	205	82784423	76354240	730	125431											
SEMA3A	10371	broad.mit.edu	37	chr7	83590818	83590818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgccgacgttgttttcggtCccttttccaaacttgttcac	7	12	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83590818	A	A	83590818	3	1	145	1	0	0	0	0	1	0	0	0	14137	855	30	3	134	3	SEMA3A	7	83590818	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	806395	83590818	75547845	731	125432											
SEMA3D	223117	broad.mit.edu	37	chr7	84666199	84666199	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgattattaagttggatAcatactgtaccaggccgtgg	10	6	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84666199	G	G	84666199	1	3	145	0	1	0	0	0	0	0	0	0	14140	406	14	5		5	SEMA3D	7	84666199	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1075381	84666199	74472464	732	125433											
ABCB4	5244	broad.mit.edu	37	chr7	87046795	87046795	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accagttccaaggttagctaTattctgtgcaattaaagcca	7	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87046795	A	A	87046795	3	1	145	1	0	0	0	0	1	0	0	0	43	1406	49	5	1377	5	ABCB4	7	87046795	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	2380596	87046795	72091868	733	125434											
ABCB1	5243	broad.mit.edu	37	chr7	87179479	87179479	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggtctagctcgcatgggtCatctcaccatcccctctgtg	10	14	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87179479	T	T	87179479	1	4	145	0	1	0	0	0	0	0	0	0	40	841	29	4		4	ABCB1	7	87179479	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	132684	87179479	71959184	734	125435											
ZNF804B	219578	broad.mit.edu	37	chr7	88965153	88965153	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttcaaacagttgtaaaAgtgaattagaggctccttcg	8	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88965153	G	G	88965153	3	3	145	1	0	0	0	0	1	0	0	0	18300	72	3	5	2871	5	ZNF804B	7	88965153	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1785674	88965153	70173510	735	125436											
ASNS	440	broad.mit.edu	37	chr7	97493846	97493846	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaaaatgttagactccTtgtacattcactaataattt	3	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97493846	C	C	97493846	1	2	145	0	1	0	0	0	0	0	0	0	1052	1624	56	5		5	ASNS	7	97493846	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	8528693	97493846	61644817	736	125437											
ZKSCAN5	23660	broad.mit.edu	37	chr7	99129944	99129944	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgagcaaagtaacaacttCaagcatttttccagcgttac	6	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99129944	G	G	99129944	1	3	145	0	1	0	0	0	0	0	0	0	17816	841	29	4		4	ZKSCAN5	7	99129944	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	1636098	99129944	60008719	737	125438											
MCM7	4176	broad.mit.edu	37	chr7	99697637	99697637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacccaatcttagacttacCaactggttcccatacttgaa	4	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99697637	A	A	99697637	3	1	145	1	0	0	0	0	1	0	0	0	9485	608	21	2	2104	2	MCM7	7	99697637	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	567693	99697637	59441026	738	125439											
PVRIG	79037	broad.mit.edu	37	chr7	99818185	99818185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagggctctctgccccgcCgactcctgcccccattctgc	8	22	2	0	rs141513122	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99818185	A	A	99818185	3	1	145	1	0	0	0	0	1	0	0	0	12946	652	23	1	495	1	PVRIG	7	99818185	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	120548	99818185	59320478	739	125440											
FBXO24	26261	broad.mit.edu	37	chr7	100187947	100187947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaagatcagggttctggaGtccggccctggaagagagct	14	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100187947	T	T	100187947	3	4	145	1	0	0	0	0	1	0	0	0	5792	1029	36	3	456	3	FBXO24	7	100187947	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	369762	100187947	58950716	740	125441											
SPDYE6	729597	broad.mit.edu	37	chr7	101989158	101989158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctcaggggcaccaccaGgagaggcctccggctgaggt	16	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101989158	A	A	101989158	1	1	145	0	1	0	0	0	0	0	0	0	15151	1015	35	4		4	SPDYE6	7	101989158	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1801211	101989158	57149505	741	125442											
LAMB1	3912	broad.mit.edu	37	chr7	107643405	107643405	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccgcctgccctttcttcCcgtcttcctttctggagagg	10	15	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107643405	A	A	107643405	1	1	145	0	1	0	0	0	0	0	0	0	8682	638	22	2		2	LAMB1	7	107643405	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	5654247	107643405	51495258	742	125443											
LAMB4	22798	broad.mit.edu	37	chr7	107696354	107696354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgtgtccccgggcacagcGatcacatctctggccgctga	12	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107696354	T	T	107696354	3	4	145	1	0	0	0	0	1	0	0	0	8685	1058	37	3	1847	3	LAMB4	7	107696354	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	52949	107696354	51442309	743	125444											
ST7	7982	broad.mit.edu	37	chr7	116769839	116769839	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacattttcatatttctcttTgttgcagaatgcaaagtatg	6	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116769839	C	C	116769839	1	2	145	0	1	0	0	0	0	0	0	0	15347	1827	63	5		5	ST7	7	116769839	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	9073485	116769839	42368824	744	125445											
KCND2	3751	broad.mit.edu	37	chr7	119915238	119915238	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacaccagcacgatggcCctggtgttctactatgtcac	8	16	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119915238	A	A	119915238	2	1	145	1	0	0	0	0	0	0	0	1	8089	610	22	2		2	KCND2	7	119915238	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	3145399	119915238	39223425	745	125446											
ING3	54556	broad.mit.edu	37	chr7	120606673	120606673	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtatctctgtgcctctcttCttttaggatctttggaatta	7	8	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120606673	T	T	120606673	1	4	145	0	1	0	0	0	0	0	0	0	7807	928	32	4		4	ING3	7	120606673	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	691435	120606673	38531990	746	125447											
C7orf58	79974	broad.mit.edu	37	chr7	120906225	120906225	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttcattattttaaactatCtcctgtaccatgtaaacata	2	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120906225	A	A	120906225	1	1	145	0	1	0	0	0	0	0	0	0	2430	928	32	3		3	C7orf58	7	120906225	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	299552	120906225	38232438	747	125448											
C7orf58	79974	broad.mit.edu	37	chr7	120906781	120906781	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacgtcccctagagaataCtggccagactgtattggttg	10	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120906781	T	T	120906781	3	4	145	1	0	0	0	0	1	0	0	0	2430	565	20	4	2672	4	C7orf58	7	120906781	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	556	120906781	38231882	748	125449											
FAM3C	10447	broad.mit.edu	37	chr7	121004205	121004205	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgccaaggcaacattgaTccctcttccaacattattct	4	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121004205	C	C	121004205	3	2	145	1	0	0	0	0	1	0	0	0	5609	1435	50	5	393	5	FAM3C	7	121004205	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	97424	121004205	38134458	749	125450											
FAM3C	10447	broad.mit.edu	37	chr7	121011399	121011399	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcccaccacgttggctgctCcacttgccattttaaaagca	7	14	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121011399	T	T	121011399	3	4	145	1	0	0	0	0	1	0	0	0	5609	855	30	4	480	4	FAM3C	7	121011399	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	7194	121011399	38127264	750	125451											
SLC13A1	6561	broad.mit.edu	37	chr7	122763294	122763294	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtaatcaaaagcaactgcAaaacaaaaatcctacagtta	5	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122763294	G	G	122763294	1	3	145	0	1	0	0	0	0	0	0	0	14504	145	5	5		5	SLC13A1	7	122763294	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1751895	122763294	36375369	751	125452											
CCDC136	64753	broad.mit.edu	37	chr7	128454755	128454755	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accaggctagcatggatgagCaggggcggcttctggtagtg	17	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128454755	G	G	128454755	3	3	145	1	0	0	0	0	1	0	0	0	2796	711	25	4	2885	4	CCDC136	7	128454755	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5691461	128454755	30683908	752	125453											
FLNC	2318	broad.mit.edu	37	chr7	128488820	128488820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgctccaggcacaggcGggccttgacctctgcttctc	11	15	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128488820	T	T	128488820	1	4	145	0	1	0	0	0	0	0	0	0	5993	1131	39	1		1	FLNC	7	128488820	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	34065	128488820	30649843	753	125454											
TNPO3	23534	broad.mit.edu	37	chr7	128641089	128641089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgtaggtaaacccagggCtccagacttaaacaattact	8	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128641089	A	A	128641089	1	1	145	0	1	0	0	0	0	0	0	0	16460	812	28	3		3	TNPO3	7	128641089	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	152269	128641089	30497574	754	125455											
NRF1	4899	broad.mit.edu	37	chr7	129349025	129349025	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtggcctgaagatatcccCtgggcaaatgtccggagtga	14	9	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129349025	T	T	129349025	2	4	145	1	0	0	0	0	0	0	0	1	10741	668	24	4		4	NRF1	7	129349025	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	707936	129349025	29789638	755	125456											
KLHDC10	23008	broad.mit.edu	37	chr7	129764423	129764424	+	Intron	DNP	GA	TT	TT													gagagggagaaggatagaagGaggcttgcgtcaaccaagca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	129764424	TT	TT	129764423	1	4	145	0	1	0	0	0	0	0	0	0	8426	1189	41	3		3	KLHDC10	7	129764423	Intron	DNP	GA	TCGA-49-6743-01A-11D-1855-08	415398	129764423	29374240	756	125457											
COPG2	26958	broad.mit.edu	37	chr7	130297028	130297029	+	Missense_Mutation	DNP	CC	AA	AA													attcaatgacaatacctggaCcataatattatcacttgatg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	130297029	AA	AA	130297028	3	1	145	1	0	0	0	0	1	0	0	0	3764	507	18	3	656	3	COPG2	7	130297028	Missense_Mutation	DNP	CC	TCGA-49-6743-01A-11D-1855-08	532605	130297028	28841635	757	125458											
AKR1B10	57016	broad.mit.edu	37	chr7	134215537	134215537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagaaggctgtgaagcGggaggacctgttcatcgtca	14	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134215537	T	T	134215537	3	4	145	1	0	0	0	0	1	0	0	0	467	1116	39	1	215	1	AKR1B10	7	134215537	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3918509	134215537	24923126	758	125459											
AKR1B15	441282	broad.mit.edu	37	chr7	134252803	134252803	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccagctactcaggagttggGaggattgtttgaacctggga	14	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134252803	C	C	134252803	1	2	145	0	1	0	0	0	0	0	0	0	468	1189	41	4		4	AKR1B15	7	134252803	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	37266	134252803	24885860	759	125460											
CALD1	800	broad.mit.edu	37	chr7	134618226	134618226	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatgggcagatcagttcaGaagagcctaaacaagaggag	12	6	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134618226	A	A	134618226	3	1	145	1	0	0	0	0	1	0	0	0	2607	943	33	4	773	4	CALD1	7	134618226	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	365423	134618226	24520437	760	125461											
CHRM2	1129	broad.mit.edu	37	chr7	136623181	136623181	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggaggcaaacttcttgTtgagggtcttgatctgctcc	12	8	3	3	rs141184073	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136623181	G	G	136623181	1	3	145	0	1	0	0	0	0	0	0	0	3408	1740	60	5		5	CHRM2	7	136623181	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2004955	136623181	22515482	761	125462											
KIAA1549	57670	broad.mit.edu	37	chr7	138545903	138545903	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactgcagggattgttggcCgtctgggctgggctgtagaa	16	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138545903	A	A	138545903	2	1	145	1	0	0	0	0	0	0	0	1	8314	639	23	1		1	KIAA1549	7	138545903	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1922722	138545903	20592760	762	125463											
OR9A4	130075	broad.mit.edu	37	chr7	141619431	141619431	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtgttgtgattggctaCggcagctgcttgtttctcta	11	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141619431	A	A	141619431	4	1	145	1	0	0	0	0	0	1	0	0	11343	547	19	3	758	3	OR9A4	7	141619431	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3073528	141619431	17519232	763	125464											
MGAM	8972	broad.mit.edu	37	chr7	141752635	141752635	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttgtcaacgacctatacTctgtcagtgatgttcagtat	7	8	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141752635	A	A	141752635	3	1	145	1	0	0	0	0	1	0	0	0	9634	1551	54	5	3108	5	MGAM	7	141752635	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	133204	141752635	17386028	764	125465											
MGAM	8972	broad.mit.edu	37	chr7	141759384	141759384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaaggctgatgggatgcGggtcatcctcattctggtta	13	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141759384	T	T	141759384	3	4	145	1	0	0	0	0	1	0	0	0	9634	1116	39	1	4054	1	MGAM	7	141759384	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	6749	141759384	17379279	765	125466											
TRPV6	55503	broad.mit.edu	37	chr7	142575277	142575277	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgacacggaagggagacaGagaagagaaaaaaagagtag	14	4	0	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142575277	T	T	142575277	1	4	145	0	1	0	0	0	0	0	0	0	16725	957	33	3		3	TRPV6	7	142575277	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	815893	142575277	16563386	766	125467											
OR2F1	26211	broad.mit.edu	37	chr7	143657162	143657162	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtttgtcctgttcttggtCatgtatgtggtgaccgtgct	12	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143657162	A	A	143657162	2	1	145	1	0	0	0	0	0	0	0	1	11090	813	29	3		3	OR2F1	7	143657162	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1081885	143657162	15481501	767	125468											
EZH2	2146	broad.mit.edu	37	chr7	148524146	148524146	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtatcttgcaaacactgTaaacaaagtgtagtggctca	8	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148524146	G	G	148524146	1	3	145	0	1	0	0	0	0	0	0	0	5377	1653	57	5		5	EZH2	7	148524146	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4866984	148524146	10614517	768	125469											
EZH2	2146	broad.mit.edu	37	chr7	148543617	148543617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtgcacaggctgtatcCttcgctgtttccattcttgg	11	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148543617	A	A	148543617	3	1	145	1	0	0	0	0	1	0	0	0	5377	681	24	2	2136	2	EZH2	7	148543617	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	19471	148543617	10595046	769	125470											
ZNF282	8427	broad.mit.edu	37	chr7	148903826	148903826	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattgctgtgtacttctcCgaagacgagtggaagaactt	11	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148903826	A	A	148903826	2	1	145	1	0	0	0	0	0	0	0	1	17945	639	23	1		1	ZNF282	7	148903826	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	360209	148903826	10234837	770	125471											
ZNF862	643641	broad.mit.edu	37	chr7	149558928	149558928	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcccaaagaggaagaattCaacgccagcttcaaggatgg	13	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149558928	T	T	149558928	2	4	145	1	0	0	0	0	0	0	0	1	18324	825	29	4		4	ZNF862	7	149558928	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	655102	149558928	9579735	771	125472											
ACCN3	9311	broad.mit.edu	37	chr7	150745902	150745902	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaatcctatcttagcctccTtagccccctgactgactctc	5	16	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150745902	A	A	150745902	1	1	145	0	1	0	0	0	0	0	0	0	130	1624	56	5		5	ACCN3	7	150745902	5'UTR	SNP	T	TCGA-49-6743-01A-11D-1855-08	1186974	150745902	8392761	772	125473											
AGAP3	116988	broad.mit.edu	37	chr7	150815863	150815864	+	Intron	DNP	GG	TT	TT													gcatgttgcttggaaacattGgttggaattccatttagccg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	150815864	TT	TT	150815863	1	4	145	0	1	0	0	0	0	0	0	0	369	1363	47	2		2	AGAP3	7	150815863	Intron	DNP	GG	TCGA-49-6743-01A-11D-1855-08	69961	150815863	8322800	773	125474											
ABCF2	10061	broad.mit.edu	37	chr7	150915804	150915804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaccttaggccacccaaCcccacccaatcacaccccac	2	24	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150915804	A	A	150915804	1	1	145	0	1	0	0	0	0	0	0	0	66	522	18	3		3	ABCF2	7	150915804	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	99941	150915804	8222859	774	125475											
ACTR3B	57180	broad.mit.edu	37	chr7	152551607	152551607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacgggcccagcatctgccGccacaaccccgtctttggag	11	16	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152551607	T	T	152551607	3	4	145	1	0	0	0	0	1	0	0	0	213	1087	38	3	1272	3	ACTR3B	7	152551607	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1635803	152551607	6587056	775	125476											
DPP6	1804	broad.mit.edu	37	chr7	154560998	154560998	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacacagtgaaggttcctcaAaggttgtagcagataagggg	13	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154560998	G	G	154560998	1	3	145	0	1	0	0	0	0	0	0	0	4770	29	1	5		5	DPP6	7	154560998	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2009391	154560998	4577665	776	125477											
CLN8	2055	broad.mit.edu	37	chr8	1728673	1728673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactggaacttcgcacaGccagaagccaagagcaggcc	13	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1728673	T	T	1728673	3	4	145	1	0	0	0	0	1	0	0	0	3578	962	34	3	807	3	CLN8	8	1728673	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08		1728673	144635349	777	125478											
CSMD1	64478	broad.mit.edu	37	chr8	2830851	2830851	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaacacatacggcaatccAcaattgtgttagacttgttt	6	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2830851	T	T	2830851	1	4	145	0	1	0	0	0	0	0	0	0	3978	174	6	5		5	CSMD1	8	2830851	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1102178	2830851	143533171	778	125479											
RP1L1	94137	broad.mit.edu	37	chr8	10480175	10480175	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctttgccgagaaaggcGgccaggttcctagtattcct	13	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10480175	T	T	10480175	2	4	145	1	0	0	0	0	0	0	0	1	13644	1103	39	1		1	RP1L1	8	10480175	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	7649324	10480175	135883847	779	125480											
CTSB	1508	broad.mit.edu	37	chr8	11706573	11706573	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccgtccccacacatgctgCcacagcatgtgagcaggtcc	9	17	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11706573	T	T	11706573	3	4	145	1	0	0	0	0	1	0	0	0	4064	739	26	4	615	4	CTSB	8	11706573	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1226398	11706573	134657449	780	125481											
CNOT7	29883	broad.mit.edu	37	chr8	17102606	17102606	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatctcttcatccaagTtgcaagcccaaacttcacaa	3	14	5	0	rs142912321		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17102606	A	A	17102606	3	1	145	1	0	0	0	0	1	0	0	0	3656	1725	60	5	831	5	CNOT7	8	17102606	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	5396033	17102606	129261416	781	125482											
NAT2	10	broad.mit.edu	37	chr8	18258446	18258446	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcactaattatcaacttaTgtgctatcagatatcctctc	3	11	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18258446	C	C	18258446	1	2	145	0	1	0	0	0	0	0	0	0	10271	1479	51	5		5	NAT2	8	18258446	3'UTR	SNP	T	TCGA-49-6743-01A-11D-1855-08	1155840	18258446	128105576	782	125483											
LZTS1	11178	broad.mit.edu	37	chr8	20107322	20107322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggcgctgtccccacgtgCcagctgctgcagggccttct	12	18	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20107322	A	A	20107322	3	1	145	1	0	0	0	0	1	0	0	0	9226	739	26	3	92	3	LZTS1	8	20107322	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1848876	20107322	126256700	783	125484											
POLR3D	661	broad.mit.edu	37	chr8	22106630	22106630	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagcagccaggaagactccAggcctcccgaaggatgtatc	11	12	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22106630	T	T	22106630	2	4	145	1	0	0	0	0	0	0	0	1	12326	175	7	5		5	POLR3D	8	22106630	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	1999308	22106630	124257392	784	125485											
ADAM7	8756	broad.mit.edu	37	chr8	24359041	24359041	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggatactttggtgatgaGcagcagataaggactgagcc	13	6	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24359041	A	A	24359041	2	1	145	1	0	0	0	0	0	0	0	1	251	962	34	4		4	ADAM7	8	24359041	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2252411	24359041	122004981	785	125486											
CDCA2	157313	broad.mit.edu	37	chr8	25337527	25337527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagacgcagtccctgatGtcaggtcaccagctactcca	9	15	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25337527	T	T	25337527	3	4	145	1	0	0	0	0	1	0	0	0	3116	1377	48	3	945	3	CDCA2	8	25337527	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	978486	25337527	121026495	786	125487											
DUSP26	78986	broad.mit.edu	37	chr8	33451051	33451051	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccagcattcccctcctacCtcctggctggctcagcgccc	7	21	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33451051	G	G	33451051	3	3	145	1	0	0	0	0	1	0	0	0	4863	695	24	4	207	4	DUSP26	8	33451051	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	8113524	33451051	112912971	787	125488											
KCNU1	157855	broad.mit.edu	37	chr8	36763180	36763180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctcggctttgttacagaGgagctccaaatagtctcaaa	8	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36763180	A	A	36763180	1	1	145	0	1	0	0	0	0	0	0	0	8163	1015	35	4		4	KCNU1	8	36763180	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3312129	36763180	109600842	788	125489											
STAR	6770	broad.mit.edu	37	chr8	38008229	38008229	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggcctgagcctcatccgctGagagctggccaacccctcat	10	16	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38008229	C	C	38008229	1	2	145	0	1	0	0	0	0	0	0	0	15372	1305	45	4		4	STAR	8	38008229	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1245049	38008229	108355793	789	125490											
ZMAT4	79698	broad.mit.edu	37	chr8	40438810	40438810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacagacctggttagctGcatccagtcgtcaaccacct	8	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40438810	T	T	40438810	1	4	145	0	1	0	0	0	0	0	0	0	17820	1334	46	3		3	ZMAT4	8	40438810	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2430581	40438810	105925212	790	125491											
PXDNL	137902	broad.mit.edu	37	chr8	52233514	52233514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcggatagcaacaaagcCaatcaataacatggtttgat	9	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52233514	A	A	52233514	1	1	145	0	1	0	0	0	0	0	0	0	12956	609	21	2		2	PXDNL	8	52233514	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	11794704	52233514	94130508	791	125492											
PXDNL	137902	broad.mit.edu	37	chr8	52412322	52412322	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatttctagttggttgaaaTgaatatacctggaaggcaaa	10	5	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52412322	C	C	52412322	3	2	145	1	0	0	0	0	1	0	0	0	12956	1464	51	5	4078	5	PXDNL	8	52412322	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	178808	52412322	93951700	792	125493											
PREX2	80243	broad.mit.edu	37	chr8	68939499	68939499	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaacacagatgttcccTtggaaggatatttagtaaca	10	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68939499	A	A	68939499	3	1	145	1	0	0	0	0	1	0	0	0	12583	1606	56	5	502	5	PREX2	8	68939499	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	16527177	68939499	77424523	793	125494											
PREX2	80243	broad.mit.edu	37	chr8	68968154	68968154	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatgtgcagacaaggaaatCtgatcaaagaccgaaagaga	11	6	2	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68968154	A	A	68968154	3	1	145	1	0	0	0	0	1	0	0	0	12583	912	32	3	1221	3	PREX2	8	68968154	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	28655	68968154	77395868	794	125495											
SULF1	23213	broad.mit.edu	37	chr8	70488298	70488298	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactacacccatgtgctgccCgtcacggtcctccatgctca	8	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70488298	T	T	70488298	3	4	145	1	0	0	0	0	1	0	0	0	15488	652	23	4	272	4	SULF1	8	70488298	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1520144	70488298	75875724	795	125496											
SULF1	23213	broad.mit.edu	37	chr8	70517294	70517294	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctagtggccttgagggcaAgctcactgagacacctctcc	10	14	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70517294	G	G	70517294	1	3	145	0	1	0	0	0	0	0	0	0	15488	87	3	5		5	SULF1	8	70517294	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	28996	70517294	75846728	796	125497											
SULF1	23213	broad.mit.edu	37	chr8	70539927	70539927	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgttattacagaacagaGaaaacaaggtgaaaagaaaa	9	4	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70539927	C	C	70539927	1	2	145	0	1	0	0	0	0	0	0	0	15488	957	33	4		4	SULF1	8	70539927	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	22633	70539927	75824095	797	125498											
TRPA1	8989	broad.mit.edu	37	chr8	72951939	72951939	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatagacacagcattaaacAagaaatactactcaataccc	3	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72951939	C	C	72951939	1	2	145	0	1	0	0	0	0	0	0	0	16702	145	5	5		5	TRPA1	8	72951939	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2412012	72951939	73412083	798	125499											
TRPA1	8989	broad.mit.edu	37	chr8	72987487	72987487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaacctccagccgacccCcgcccgcacgtcggaacccc	9	21	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72987487	A	A	72987487	1	1	145	0	1	0	0	0	0	0	0	0	16702	638	22	2		2	TRPA1	8	72987487	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	35548	72987487	73376535	799	125500											
STAU2	27067	broad.mit.edu	37	chr8	74515976	74515976	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatacctgcatcacaaattcTcgacgtcgaggcattcctct	6	13	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74515976	C	C	74515976	2	2	145	1	0	0	0	0	0	0	0	1	15391	1538	54	5		5	STAU2	8	74515976	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	1528489	74515976	71848046	800	125501											
ZFHX4	79776	broad.mit.edu	37	chr8	77618205	77618205	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttggggtcttcgaggtctCttggtggtcatatgactatg	14	6	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77618205	G	G	77618205	3	3	145	1	0	0	0	0	1	0	0	0	17761	913	32	4	1884	4	ZFHX4	8	77618205	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3102229	77618205	68745817	801	125502											
ZFHX4	79776	broad.mit.edu	37	chr8	77768283	77768283	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggagaccgttggcagtcaGctcgatcgggagaaagatta	15	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77768283	A	A	77768283	2	1	145	1	0	0	0	0	0	0	0	1	17761	962	34	4		4	ZFHX4	8	77768283	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	150078	77768283	68595739	802	125503											
FAM82B	51115	broad.mit.edu	37	chr8	87491270	87491270	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaaacaattttatacattCaaattgtaccttcttttctc	1	8	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87491270	T	T	87491270	1	4	145	0	1	0	0	0	0	0	0	0	5685	841	29	4		4	FAM82B	8	87491270	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	9722987	87491270	58872752	803	125504											
CNGB3	54714	broad.mit.edu	37	chr8	87672126	87672126	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggccctccccattgacaaagGatgtagactcagaggcaaga	11	11	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87672126	C	C	87672126	1	2	145	0	1	0	0	0	0	0	0	0	3633	1189	41	4		4	CNGB3	8	87672126	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	180856	87672126	58691896	804	125505											
CNBD1	168975	broad.mit.edu	37	chr8	87951878	87951879	+	Frame_Shift_Ins	INS	-	A	A													aacaacctgatgattctaacINSaatatagctgtccatgttca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87951879	A	A	87951878	7	5	145	1	0	1	1	0	0	0	0	0	3623	477	17	0	341	0	CNBD1	8	87951878	Frame_Shift_Ins	INS	-	TCGA-49-6743-01A-11D-1855-08	279752	87951878	58412144	805	125506											
MMP16	4325	broad.mit.edu	37	chr8	89086923	89086923	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtaagtaatttgcattgGgtatccatccatcaccctgt	8	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89086923	A	A	89086923	3	1	145	1	0	0	0	0	1	0	0	0	9748	1232	43	4	863	4	MMP16	8	89086923	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1135045	89086923	57277099	806	125507											
MMP16	4325	broad.mit.edu	37	chr8	89128820	89128820	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttggctccgggataggaGggtctgccggttggaggccg	20	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89128820	T	T	89128820	2	4	145	1	0	0	0	0	0	0	0	1	9748	987	35	2		2	MMP16	8	89128820	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	41897	89128820	57235202	807	125508											
NBN	4683	broad.mit.edu	37	chr8	90983304	90983304	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacacttttacacaaaatcCcaaaatgaaatacgttaaca	2	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90983304	G	G	90983304	1	3	145	0	1	0	0	0	0	0	0	0	10285	638	22	4		4	NBN	8	90983304	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1854484	90983304	55380718	808	125509											
TMEM67	91147	broad.mit.edu	37	chr8	94822191	94822191	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgcttgtagatatttttCtttttttctttttttttttt	4	3	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94822191	T	T	94822191	1	4	145	0	1	0	0	0	0	0	0	0	16319	928	32	4		4	TMEM67	8	94822191	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3838887	94822191	51541831	809	125510											
CDH17	1015	broad.mit.edu	37	chr8	95185948	95185948	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaataagtgtatcagtgaaGactgtgagggtgggtctcta	13	5	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95185948	C	C	95185948	1	2	145	0	1	0	0	0	0	0	0	0	3132	957	33	4		4	CDH17	8	95185948	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	363757	95185948	51178074	810	125511											
PLEKHF2	79666	broad.mit.edu	37	chr8	96166319	96166319	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaatactagacgtataaGtatagtggaaaactgttttg	9	4	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96166319	A	A	96166319	3	1	145	1	0	0	0	0	1	0	0	0	12162	1029	36	4	49	4	PLEKHF2	8	96166319	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	980371	96166319	50197703	811	125512											
PGCP	10404	broad.mit.edu	37	chr8	97892004	97892004	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttccactttcaaggtaaCctggtggcttcttctctcaa	6	11	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97892004	T	T	97892004	1	4	145	0	1	0	0	0	0	0	0	0	11881	522	18	4		4	PGCP	8	97892004	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1725685	97892004	48472018	812	125513											
NIPAL2	79815	broad.mit.edu	37	chr8	99205191	99205191	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaataacaggccaacagcCatccttctcagcatttagac	6	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99205191	A	A	99205191	1	1	145	0	1	0	0	0	0	0	0	0	10520	609	21	2		2	NIPAL2	8	99205191	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	1313187	99205191	47158831	813	125514											
SLC25A32	81034	broad.mit.edu	37	chr8	104419779	104419779	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattaaatgactcaacttatCattttacatttacatgtaaa	3	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104419779	T	T	104419779	1	4	145	0	1	0	0	0	0	0	0	0	14610	841	29	4		4	SLC25A32	8	104419779	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5214588	104419779	41944243	814	125515											
EIF3E	3646	broad.mit.edu	37	chr8	109260899	109260899	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgccgatccaaaaagtgCgcgatgcgagtagtcaagtc	12	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109260899	A	A	109260899	2	1	145	1	0	0	0	0	0	0	0	1	5057	755	27	3		3	EIF3E	8	109260899	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	4841120	109260899	37103123	815	125516											
TRHR	7201	broad.mit.edu	37	chr8	110131512	110131512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactgcaagcagaagccaaCagagaaacctgctaactaca	7	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110131512	A	A	110131512	3	1	145	1	0	0	0	0	1	0	0	0	16604	478	17	3	1031	3	TRHR	8	110131512	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	870613	110131512	36232510	816	125517											
NUDCD1	84955	broad.mit.edu	37	chr8	110255539	110255539	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggacatagcctgccaagAatatgagacaaacaaaagaa	8	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110255539	C	C	110255539	1	2	145	0	1	0	0	0	0	0	0	0	10817	261	9	5		5	NUDCD1	8	110255539	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	124027	110255539	36108483	817	125518											
CSMD3	114788	broad.mit.edu	37	chr8	113331138	113331138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcagaattgcattaccaaCtaaagtaaatcctggaagac	7	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113331138	A	A	113331138	3	1	145	1	0	0	0	0	1	0	0	0	3980	565	20	3	3935	3	CSMD3	8	113331138	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3075599	113331138	33032884	818	125519											
CSMD3	114788	broad.mit.edu	37	chr8	113519052	113519052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgttaaattgcctccaCagggtgctttaatttaaaca	6	9	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113519052	A	A	113519052	3	1	145	1	0	0	0	0	1	0	0	0	3980	478	17	3	6532	3	CSMD3	8	113519052	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	187914	113519052	32844970	819	125520											
CSMD3	114788	broad.mit.edu	37	chr8	113960090	113960090	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cataaattggaagctgttttAatacctccctcatttactgc	5	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113960090	G	G	113960090	2	3	145	1	0	0	0	0	0	0	0	1	3980	358	13	5		5	CSMD3	8	113960090	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	441038	113960090	32403932	820	125521											
RAD21	5885	broad.mit.edu	37	chr8	117859755	117859755	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttatataatatggaacCttggtccaggtgttgcgatg	10	8	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117859755	T	T	117859755	3	4	145	1	0	0	0	0	1	0	0	0	13089	681	24	4	19	4	RAD21	8	117859755	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3899665	117859755	28504267	821	125522											
SLC30A8	169026	broad.mit.edu	37	chr8	118165313	118165313	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctctaagcggctgacattTggatggcaccgagcaggtac	12	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118165313	C	C	118165313	2	2	145	1	0	0	0	0	0	0	0	1	14675	1809	63	5		5	SLC30A8	8	118165313	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	305558	118165313	28198709	822	125523											
NOV	4856	broad.mit.edu	37	chr8	120430210	120430210	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggttttggaacatgcccTccaaatcttacatagcttct	7	10	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120430210	A	A	120430210	1	1	145	0	1	0	0	0	0	0	0	0	10648	1566	54	5		5	NOV	8	120430210	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2264897	120430210	25933812	823	125524											
COL14A1	7373	broad.mit.edu	37	chr8	121239648	121239648	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccacaatccctctttaccCcatcaatttccttccccatc	0	20	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121239648	T	T	121239648	1	4	145	0	1	0	0	0	0	0	0	0	3703	638	22	4		4	COL14A1	8	121239648	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	809438	121239648	25124374	824	125525											
COL14A1	7373	broad.mit.edu	37	chr8	121290841	121290841	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatatataaacaatagtggCtaccaaatatgatgttagaa	7	4	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121290841	G	G	121290841	1	3	145	0	1	0	0	0	0	0	0	0	3703	812	28	4		4	COL14A1	8	121290841	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	51193	121290841	25073181	825	125526											
HAS2	3037	broad.mit.edu	37	chr8	122641191	122641191	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttcactgaagatgtccatCatgtaaaggtcatcttctga	7	9	5	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122641191	T	T	122641191	3	4	145	1	0	0	0	0	1	0	0	0	7028	826	29	4	1280	4	HAS2	8	122641191	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1350350	122641191	23722831	826	125527											
ATAD2	29028	broad.mit.edu	37	chr8	124381335	124381335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggacttcttggtcctgCggaagataatcggtatcttg	12	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124381335	A	A	124381335	3	1	145	1	0	0	0	0	1	0	0	0	1075	768	27	3	3244	3	ATAD2	8	124381335	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1740144	124381335	21982687	827	125528											
KLHL38	340359	broad.mit.edu	37	chr8	124658090	124658090	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccgtctcggggtcgtaGcaatcgaaggaggcggagtc	17	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124658090	A	A	124658090	2	1	145	1	0	0	0	0	0	0	0	1	8461	963	34	4		4	KLHL38	8	124658090	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	276755	124658090	21705932	828	125529											
ANXA13	312	broad.mit.edu	37	chr8	124715076	124715076	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggactcacagcttaaagGtggttggaggtgtctatgga	14	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124715076	A	A	124715076	1	1	145	0	1	0	0	0	0	0	0	0	717	1276	44	4		4	ANXA13	8	124715076	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	56986	124715076	21648946	829	125530											
FER1L6	654463	broad.mit.edu	37	chr8	124982245	124982245	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaggtgcaagtctggggttGatgaccagaatgaacttttt	12	5	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124982245	C	C	124982245	1	2	145	0	1	0	0	0	0	0	0	0	5872	1305	45	4		4	FER1L6	8	124982245	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	267169	124982245	21381777	830	125531											
FER1L6	654463	broad.mit.edu	37	chr8	125023001	125023001	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagaattgggaagctggtGggggaagggatttttaaaat	16	1	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125023001	A	A	125023001	1	1	145	0	1	0	0	0	0	0	0	0	5872	1363	47	4		4	FER1L6	8	125023001	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	40756	125023001	21341021	831	125532											
KIAA0196	9897	broad.mit.edu	37	chr8	126049569	126049569	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtaagcgctttgttgttaTgtatatctggaaagagaaag	13	3	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126049569	C	C	126049569	3	2	145	1	0	0	0	0	1	0	0	0	8231	1464	51	5	404	5	KIAA0196	8	126049569	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1026568	126049569	20314453	832	125533											
KIAA0196	9897	broad.mit.edu	37	chr8	126051107	126051107	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaatgccagctgcctccaGataggctgtgatttcatata	10	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126051107	A	A	126051107	2	1	145	1	0	0	0	0	0	0	0	1	8231	933	33	4		4	KIAA0196	8	126051107	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1538	126051107	20312915	833	125534											
ADCY8	114	broad.mit.edu	37	chr8	131861864	131861865	+	Missense_Mutation	DNP	CC	AA	AA													ttacgatatttaagatggcaCccaggaaattaatcaaaatg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	131861865	AA	AA	131861864	3	1	145	1	0	0	0	0	1	0	0	0	300	507	18	3	1395	3	ADCY8	8	131861864	Missense_Mutation	DNP	CC	TCGA-49-6743-01A-11D-1855-08	5810757	131861864	14502158	834	125535											
TMEM71	137835	broad.mit.edu	37	chr8	133723080	133723080	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaaatcacatagtcaaActaaaatggctttttctcca	3	8	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133723080	T	T	133723080	1	4	145	0	1	0	0	0	0	0	0	0	16323	58	2	5		5	TMEM71	8	133723080	3'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	1861216	133723080	12640942	835	125536											
PHF20L1	51105	broad.mit.edu	37	chr8	133816176	133816176	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggataaagatgagagaaAgtggtttaaagtaccttcaa	10	3	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133816176	G	G	133816176	3	3	145	1	0	0	0	0	1	0	0	0	11927	72	3	5	642	5	PHF20L1	8	133816176	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	93096	133816176	12547846	836	125537											
TG	7038	broad.mit.edu	37	chr8	133920388	133920388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaacaaagaaaataactcTacaggcccattgcctctgct	5	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133920388	C	C	133920388	1	2	145	0	1	0	0	0	0	0	0	0	15936	1537	53	5		5	TG	8	133920388	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	104212	133920388	12443634	837	125538											
EIF2C2	27161	broad.mit.edu	37	chr8	141549564	141549564	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggagaacctaggggtacGggagggaggaggttgtgctt	21	4	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141549564	A	A	141549564	1	1	145	0	1	0	0	0	0	0	0	0	5046	1131	39	4		4	EIF2C2	8	141549564	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	7629176	141549564	4814458	838	125539											
CYP11B2	1585	broad.mit.edu	37	chr8	143997189	143997189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagaaaccaagctttgtGcttcatgccatcctcaccca	7	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143997189	T	T	143997189	1	4	145	0	1	0	0	0	0	0	0	0	4179	1334	46	3		3	CYP11B2	8	143997189	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2447625	143997189	2366833	839	125540											
PLEC	5339	broad.mit.edu	37	chr8	144993348	144993348	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctccaccacctcagccttCtccgcccctttcagtggcag	7	19	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144993348	G	G	144993348	3	3	145	1	0	0	0	0	1	0	0	0	12147	912	32	4	3006	4	PLEC	8	144993348	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	996159	144993348	1370674	840	125541											
PARP10	84875	broad.mit.edu	37	chr8	145058780	145058780	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccaggcccgcaagaaggtCctcatggtagagctgcagga	13	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145058780	T	T	145058780	3	4	145	1	0	0	0	0	1	0	0	0	11549	855	30	4	1715	4	PARP10	8	145058780	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	65432	145058780	1305242	841	125542											
PPP1R16A	84988	broad.mit.edu	37	chr8	145726036	145726036	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggagggggcttccagcgCagcagtctgcagctccggcc	17	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145726036	T	T	145726036	1	4	145	0	1	0	0	0	0	0	0	0	12466	725	25	4		4	PPP1R16A	8	145726036	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	667256	145726036	637986	842	125543											
SMARCA2	6595	broad.mit.edu	37	chr9	2084172	2084172	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actacttatgagtatattatAaaagacaagcacattcttgc	5	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2084172	G	G	2084172	3	3	145	1	0	0	0	0	1	0	0	0	14883	352	13	5	2564	5	SMARCA2	9	2084172	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08		2084172	139129259	843	125544											
RCL1	10171	broad.mit.edu	37	chr9	4826984	4826984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccatttatgaagcaccCgttaaaaatagttctacgag	8	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4826984	A	A	4826984	3	1	145	1	0	0	0	0	1	0	0	0	13286	652	23	1	345	1	RCL1	9	4826984	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2742812	4826984	136386447	844	125545											
IL33	90865	broad.mit.edu	37	chr9	6252893	6252893	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctattacagagtatcttgCttctctaagcacatacaatg	5	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6252893	G	G	6252893	3	3	145	1	0	0	0	0	1	0	0	0	7763	797	28	4	385	4	IL33	9	6252893	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1425909	6252893	134960538	845	125546											
PTPRD	5789	broad.mit.edu	37	chr9	8376508	8376508	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcactgttgccattgagatCaagatttaagtaaagcctta	7	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8376508	G	G	8376508	1	3	145	0	1	0	0	0	0	0	0	0	12907	841	29	4		4	PTPRD	9	8376508	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2123615	8376508	132836923	846	125547											
PTPRD	5789	broad.mit.edu	37	chr9	8471018	8471018	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctaattccatttcatctgGactctcccatggcttgataa	5	11	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8471018	T	T	8471018	3	4	145	1	0	0	0	0	1	0	0	0	12907	1174	41	3	2386	3	PTPRD	9	8471018	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	94510	8471018	132742413	847	125548											
PTPRD	5789	broad.mit.edu	37	chr9	8492837	8492837	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttagtattactgttcaaggCacatacatgcacagacatga	8	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8492837	G	G	8492837	1	3	145	0	1	0	0	0	0	0	0	0	12907	725	25	4		4	PTPRD	9	8492837	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	21819	8492837	132720594	848	125549											
TYRP1	7306	broad.mit.edu	37	chr9	12704597	12704597	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttggctcatctattcctgAatggaacagggggacaaacc	10	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12704597	G	G	12704597	3	3	145	1	0	0	0	0	1	0	0	0	16942	246	9	5	1171	5	TYRP1	9	12704597	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	4211760	12704597	128508834	849	125550											
FREM1	158326	broad.mit.edu	37	chr9	14770550	14770550	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaattactctctagccctgCcagccactgggtattttaaa	6	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14770550	G	G	14770550	1	3	145	0	1	0	0	0	0	0	0	0	6104	754	26	4		4	FREM1	9	14770550	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2065953	14770550	126442881	850	125551											
SH3GL2	6456	broad.mit.edu	37	chr9	17789338	17789338	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagaagtgagctcaaataAgccttttccataagcccttt	8	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17789338	T	T	17789338	1	4	145	0	1	0	0	0	0	0	0	0	14364	87	3	5		5	SH3GL2	9	17789338	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3018788	17789338	123424093	851	125552											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18681948	18681948	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgtacccactccctgctatAaacccaaaggtaacttgaca	5	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18681948	G	G	18681948	3	3	145	1	0	0	0	0	1	0	0	0	274	363	13	5	1526	5	ADAMTSL1	9	18681948	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	892610	18681948	122531483	852	125553											
HAUS6	54801	broad.mit.edu	37	chr9	19093229	19093229	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaaaatgatacatcagatGaataaacttaggaccaccag	7	8	1	3	rs151253216		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19093229	A	A	19093229	3	1	145	1	0	0	0	0	1	0	0	0	7036	1290	45	4	2547	4	HAUS6	9	19093229	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	411281	19093229	122120202	853	125554											
PLIN2	123	broad.mit.edu	37	chr9	19116393	19116393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgttaacaagataatcCatcacgtcatctaaagattc	6	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19116393	A	A	19116393	3	1	145	1	0	0	0	0	1	0	0	0	12185	594	21	2	150	2	PLIN2	9	19116393	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	23164	19116393	122097038	854	125555											
IFNA4	3441	broad.mit.edu	37	chr9	21187075	21187075	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttcttctctgttagataAagagtgattctttggaagta	8	4	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21187075	T	T	21187075	2	4	145	1	0	0	0	0	0	0	0	1	7609	1	1	5		5	IFNA4	9	21187075	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	2070682	21187075	120026356	855	125556											
UBAP1	51271	broad.mit.edu	37	chr9	34249871	34249871	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgtcccccagcgagcGgcagtgtgtggagacggtgg	18	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34249871	A	A	34249871	3	1	145	1	0	0	0	0	1	0	0	0	16962	1116	39	4	1429	4	UBAP1	9	34249871	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	13062796	34249871	106963560	856	125557											
ARID3C	138715	broad.mit.edu	37	chr9	34621535	34621535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaagctggcacaggctGgcggcgggcaaagaggacac	18	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34621535	T	T	34621535	3	4	145	1	0	0	0	0	1	0	0	0	920	1357	47	2	82	2	ARID3C	9	34621535	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	371664	34621535	106591896	857	125558											
FANCG	2189	broad.mit.edu	37	chr9	35076143	35076143	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggccctgaggaggagaaaGggagggaaggtcttagggct	20	5	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35076143	C	C	35076143	1	2	145	0	1	0	0	0	0	0	0	0	5725	1015	35	4		4	FANCG	9	35076143	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	454608	35076143	106137288	858	125559											
CD72	971	broad.mit.edu	37	chr9	35610826	35610826	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctccccttcccctgtatAaaacctaaatcctaactcac	1	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35610826	G	G	35610826	1	3	145	0	1	0	0	0	0	0	0	0	3064	377	13	5		5	CD72	9	35610826	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	534683	35610826	105602605	859	125560											
CA9	768	broad.mit.edu	37	chr9	35674511	35674511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccataccaatatccccatccCcactctcggaggtagaaagg	7	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35674511	A	A	35674511	1	1	145	0	1	0	0	0	0	0	0	0	2550	638	22	2		2	CA9	9	35674511	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	63685	35674511	105538920	860	125561											
TLN1	7094	broad.mit.edu	37	chr9	35725780	35725780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgggagaagaggcccCccagatggtggagtccaagg	17	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35725780	A	A	35725780	1	1	145	0	1	0	0	0	0	0	0	0	16070	638	22	2		2	TLN1	9	35725780	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	51269	35725780	105487651	861	125562											
ZCCHC7	84186	broad.mit.edu	37	chr9	37126665	37126665	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgttagagttcaagcAcaagaaaatgcccatggtct	9	7	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37126665	T	T	37126665	2	4	145	1	0	0	0	0	0	0	0	1	17719	146	6	5		5	ZCCHC7	9	37126665	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	1400885	37126665	104086766	862	125563											
FRMPD1	22844	broad.mit.edu	37	chr9	37744546	37744546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccctgaggaaaagaagGtctttcctacagaccgacta	9	10	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37744546	T	T	37744546	3	4	145	1	0	0	0	0	1	0	0	0	6117	1252	44	3	2575	3	FRMPD1	9	37744546	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	617881	37744546	103468885	863	125564											
PGM5	5239	broad.mit.edu	37	chr9	71098938	71098938	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttgaatacgtggaccctGtggatggcactgtgaccaag	13	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71098938	A	A	71098938	3	1	145	1	0	0	0	0	1	0	0	0	11896	1377	48	4	1487	4	PGM5	9	71098938	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	33354392	71098938	70114493	864	125565											
GDA	9615	broad.mit.edu	37	chr9	74764461	74764461	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaccagcagacccgcgctgCgctccgccgctgacatgtgt	12	17	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74764461	A	A	74764461	1	1	145	0	1	0	0	0	0	0	0	0	6369	783	27	3		3	GDA	9	74764461	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	3665523	74764461	66448970	865	125566											
RORB	6096	broad.mit.edu	37	chr9	77275562	77275562	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagaacatcattaagtccCatttggagacatgtcaatac	6	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77275562	T	T	77275562	3	4	145	1	0	0	0	0	1	0	0	0	13640	594	21	4	685	4	RORB	9	77275562	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2511101	77275562	63937869	866	125567											
TRPM6	140803	broad.mit.edu	37	chr9	77377872	77377872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagaatgctttctcttggCcaggagagcctcatcctctt	9	11	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377872	A	A	77377872	3	1	145	1	0	0	0	0	1	0	0	0	16715	739	26	3	2409	3	TRPM6	9	77377872	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	102310	77377872	63835559	867	125568											
TRPM6	140803	broad.mit.edu	37	chr9	77378084	77378084	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggagaaaaccaacaagcAcattaagccagtgggaattt	10	7	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77378084	T	T	77378084	1	4	145	0	1	0	0	0	0	0	0	0	16715	174	6	5		5	TRPM6	9	77378084	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	212	77378084	63835347	868	125569											
PCSK5	5125	broad.mit.edu	37	chr9	78804121	78804121	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaccactcttcagagaatgGatacaaatcctgcaaaaagt	7	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78804121	C	C	78804121	3	2	145	1	0	0	0	0	1	0	0	0	11697	1174	41	4	2566	4	PCSK5	9	78804121	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1426037	78804121	62409310	869	125570											
FLJ46321	389763	broad.mit.edu	37	chr9	84603695	84603695	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagttaagcctgggcaccctCagtgctcagttgcttcaggc	11	12	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84603695	A	A	84603695	1	1	145	0	1	0	0	0	0	0	0	0	5990	841	29	3		3	FLJ46321	9	84603695	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	5799574	84603695	56609736	870	125571											
FLJ46321	389763	broad.mit.edu	37	chr9	84608488	84608488	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtactacagattttcaaagcGaaaaattagattcaacaagc	6	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84608488	A	A	84608488	3	1	145	1	0	0	0	0	1	0	0	0	5990	1059	37	4	3117	4	FLJ46321	9	84608488	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	4793	84608488	56604943	871	125572											
C9orf102	375748	broad.mit.edu	37	chr9	98680526	98680526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattaaggtcaccattgcaGgtctggctggaaaagaccca	11	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98680526	T	T	98680526	1	4	145	0	1	0	0	0	0	0	0	0	2471	1015	35	2		2	C9orf102	9	98680526	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	14072038	98680526	42532905	872	125573											
HSD17B3	3293	broad.mit.edu	37	chr9	99003063	99003063	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatttcatgggcaaggcagcCacaggtttcacctccaattg	10	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99003063	T	T	99003063	3	4	145	1	0	0	0	0	1	0	0	0	7452	594	21	4	141	4	HSD17B3	9	99003063	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	322537	99003063	42210368	873	125574											
HSD17B3	3293	broad.mit.edu	37	chr9	99007594	99007594	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggagaaataagaggaagaAggaagagacttggaagtcat	15	2	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99007594	C	C	99007594	1	2	145	0	1	0	0	0	0	0	0	0	7452	87	3	5		5	HSD17B3	9	99007594	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	4531	99007594	42205837	874	125575											
ZNF510	22869	broad.mit.edu	37	chr9	99521845	99521845	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctcctgtgtgagttctctGatgttgaatgagatgtcctt	10	8	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99521845	C	C	99521845	3	2	145	1	0	0	0	0	1	0	0	0	18081	1299	45	4	788	4	ZNF510	9	99521845	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	514251	99521845	41691586	875	125576											
KIAA1529	57653	broad.mit.edu	37	chr9	100013133	100013133	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagctcagaatggtatgtaGatctcccatggtatttcaat	9	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100013133	C	C	100013133	1	2	145	0	1	0	0	0	0	0	0	0	8310	957	33	4		4	KIAA1529	9	100013133	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	491288	100013133	41200298	876	125577											
TDRD7	23424	broad.mit.edu	37	chr9	100235934	100235934	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaacctcttctacctctAaaattagccctaaaattaca	3	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100235934	T	T	100235934	1	4	145	0	1	0	0	0	0	0	0	0	15857	377	13	5		5	TDRD7	9	100235934	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	222801	100235934	40977497	877	125578											
COL15A1	1306	broad.mit.edu	37	chr9	101759217	101759217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttttcctcccttcagcCcaaagaagcaaaagttgaac	5	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101759217	A	A	101759217	3	1	145	1	0	0	0	0	1	0	0	0	3704	637	22	2	828	2	COL15A1	9	101759217	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1523283	101759217	39454214	878	125579											
ABCA1	19	broad.mit.edu	37	chr9	107568729	107568729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcaaagggaagacagCaagagtaggattaccagaga	12	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107568729	A	A	107568729	1	1	145	0	1	0	0	0	0	0	0	0	28	725	25	3		3	ABCA1	9	107568729	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5809512	107568729	33644702	879	125580											
PTPN3	5774	broad.mit.edu	37	chr9	112153798	112153798	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccaaattttgaggcagcTttgcaaacgtgatggccaaa	10	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112153798	C	C	112153798	3	2	145	1	0	0	0	0	1	0	0	0	12897	1609	56	5	772	5	PTPN3	9	112153798	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	4585069	112153798	29059633	880	125581											
SVEP1	79987	broad.mit.edu	37	chr9	113194166	113194166	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaataaaagaatggaattagGaacttttagttctacatata	7	3	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113194166	T	T	113194166	1	4	145	0	1	0	0	0	0	0	0	0	15538	1189	41	3		3	SVEP1	9	113194166	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1040368	113194166	28019265	881	125582											
SVEP1	79987	broad.mit.edu	37	chr9	113275339	113275339	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggttgttgcaagtgttttgGataaagtaaccattttcggg	12	4	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113275339	T	T	113275339	2	4	145	1	0	0	0	0	0	0	0	1	15538	1164	41	3		3	SVEP1	9	113275339	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	81173	113275339	27938092	882	125583											
MUSK	4593	broad.mit.edu	37	chr9	113459600	113459600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattcacgtccctatctctGgcaggaaaattcccgaattg	8	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113459600	A	A	113459600	1	1	145	0	1	0	0	0	0	0	0	0	10083	1363	47	4		4	MUSK	9	113459600	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	184261	113459600	27753831	883	125584											
COL27A1	85301	broad.mit.edu	37	chr9	117064009	117064009	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccccccggtaggtaactgAgtgctgggtgcatcttggac	15	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117064009	T	T	117064009	1	4	145	0	1	0	0	0	0	0	0	0	3717	319	11	5		5	COL27A1	9	117064009	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3604409	117064009	24149422	884	125585											
MEGF9	1955	broad.mit.edu	37	chr9	123370269	123370269	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttacactggtcacattcAggttccaattcactcgattc	5	12	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123370269	G	G	123370269	2	3	145	1	0	0	0	0	0	0	0	1	9557	175	7	5		5	MEGF9	9	123370269	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	6306260	123370269	17843162	885	125586											
GOLGA1	2800	broad.mit.edu	37	chr9	127651396	127651396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcatcttgctgtagcaCccatgcaggtgcagctggga	12	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127651396	A	A	127651396	1	1	145	0	1	0	0	0	0	0	0	0	6615	522	18	3		3	GOLGA1	9	127651396	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4281127	127651396	13562035	886	125587											
GARNL3	84253	broad.mit.edu	37	chr9	130149691	130149691	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgtctaatatctacatgtGattactgtttaaagaagtta	7	4	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130149691	A	A	130149691	1	1	145	0	1	0	0	0	0	0	0	0	6303	1305	45	4		4	GARNL3	9	130149691	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2498295	130149691	11063740	887	125588											
ZNF79	7633	broad.mit.edu	37	chr9	130206394	130206394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtagagatgccccctgggGattcagaccacgggaccagt	14	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130206394	T	T	130206394	3	4	145	1	0	0	0	0	1	0	0	0	18290	1174	41	3	433	3	ZNF79	9	130206394	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	56703	130206394	11007037	888	125589											
C9orf114	51490	broad.mit.edu	37	chr9	131590995	131590995	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggccacaacctgtggccctCcccaagaccccagctcaccg	9	20	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131590995	T	T	131590995	1	4	145	0	1	0	0	0	0	0	0	0	2475	870	30	4		4	C9orf114	9	131590995	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1384601	131590995	9622436	889	125590											
USP20	10868	broad.mit.edu	37	chr9	132630679	132630679	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttgacgaccagcccgcGgaggcccagcccccgtcacc	11	21	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132630679	T	T	132630679	2	4	145	1	0	0	0	0	0	0	0	1	17178	1103	39	1		1	USP20	9	132630679	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1039684	132630679	8582752	890	125591											
GTF3C5	9328	broad.mit.edu	37	chr9	135926292	135926292	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcccaagcagccactggAggctgcagcccagacgtgga	15	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135926292	T	T	135926292	3	4	145	1	0	0	0	0	1	0	0	0	6941	304	11	5	709	5	GTF3C5	9	135926292	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	3295613	135926292	5287139	891	125592											
VAV2	7410	broad.mit.edu	37	chr9	136633700	136633700	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctggccacagctgtgccgAtgacgcggggcgtgaacact	14	13	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136633700	G	G	136633700	3	3	145	1	0	0	0	0	1	0	0	0	17259	333	12	5	191	5	VAV2	9	136633700	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	707408	136633700	4579731	892	125593											
ABCA2	20	broad.mit.edu	37	chr9	139903447	139903447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggttgaagaaccgcaccaCgtccttcacactctggctgc	10	15	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139903447	A	A	139903447	3	1	145	1	0	0	0	0	1	0	0	0	32	536	19	3	440	3	ABCA2	9	139903447	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3269747	139903447	1309984	893	125594											
ABCA2	20	broad.mit.edu	37	chr9	139909475	139909475	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccacatgcttgcggaTgaactgggacacctggagct	15	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139909475	C	C	139909475	3	2	145	1	0	0	0	0	1	0	0	0	32	1464	51	5	3638	5	ABCA2	9	139909475	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	6028	139909475	1303956	894	125595											
CACNA1B	774	broad.mit.edu	37	chr9	141010017	141010017	+	Frame_Shift_Del	DEL	C	-	-													tttgcagatgggtcctgtgtCcctgttccaccctctgaagg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141010017	-	-	141010017	7	5	145	1	0	1	0	1	0	0	0	0	2565	855	30	0	5825	0	CACNA1B	9	141010017	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	1100542	141010017	203414	895	125596											
WDR37	22884	broad.mit.edu	37	chr10	1175307	1175307	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaccggcagcccttagtttCactgtttgccagcacagacc	8	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1175307	T	T	1175307	1	4	145	0	1	0	0	0	0	0	0	0	17418	841	29	4		4	WDR37	10	1175307	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08		1175307	134359440	896	125597											
OLAH	55301	broad.mit.edu	37	chr10	15103717	15103717	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcacttgtgtttctccatCtccagtgcactccttaaggc	7	13	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15103717	G	G	15103717	1	3	145	0	1	0	0	0	0	0	0	0	10946	928	32	4		4	OLAH	10	15103717	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	13928410	15103717	120431030	897	125598											
ITGA8	8516	broad.mit.edu	37	chr10	15628602	15628602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcttatttccacctgcgCtacagcagtgatgttgattt	7	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15628602	A	A	15628602	3	1	145	1	0	0	0	0	1	0	0	0	7952	797	28	3	870	3	ITGA8	10	15628602	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	524885	15628602	119906145	898	125599											
CUBN	8029	broad.mit.edu	37	chr10	16893306	16893306	+	Frame_Shift_Del	DEL	A	-	-													aatgtattgaaggtgaggtgAattactttgtttacaggtgc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16893306	-	-	16893306	7	5	145	1	0	1	0	1	0	0	0	0	4084	242	9	0	1312	0	CUBN	10	16893306	Frame_Shift_Del	DEL	A	TCGA-49-6743-01A-11D-1855-08	1264704	16893306	118641441	899	125600											
CUBN	8029	broad.mit.edu	37	chr10	17032234	17032234	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaatgtctaagaatagaaCactgctgactactggaaaga	8	6	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17032234	G	G	17032234	1	3	145	0	1	0	0	0	0	0	0	0	4084	493	17	4		4	CUBN	10	17032234	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	138928	17032234	118502513	900	125601											
SLC39A12	221074	broad.mit.edu	37	chr10	18242214	18242215	+	Missense_Mutation	DNP	CC	AA	AA													ggaagcgtggaaatgtgcttCcggacaaagctctcagtatc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18242215	AA	AA	18242214	3	1	145	1	0	0	0	0	1	0	0	0	14729	854	30	3	11	3	SLC39A12	10	18242214	Missense_Mutation	DNP	CC	TCGA-49-6743-01A-11D-1855-08	1209980	18242214	117292533	901	125602											
SLC39A12	221074	broad.mit.edu	37	chr10	18270153	18270153	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttctcgctattccatctAgaattcactcctcaaggatg	7	11	4	1	rs79375232	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18270153	G	G	18270153	1	3	145	0	1	0	0	0	0	0	0	0	14729	435	15	5		5	SLC39A12	10	18270153	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	27939	18270153	117264594	902	125603											
CACNB2	783	broad.mit.edu	37	chr10	18828318	18828318	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggacaagtcgcggcctcTccaggcaagagacatttgac	13	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18828318	C	C	18828318	3	2	145	1	0	0	0	0	1	0	0	0	2579	1551	54	5	2012	5	CACNB2	10	18828318	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	558165	18828318	116706429	903	125604											
C10orf113	387638	broad.mit.edu	37	chr10	21415032	21415032	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctcaggcccttctcggctCtccgttctgccttaccaggc	9	18	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21415032	G	G	21415032	3	3	145	1	0	0	0	0	1	0	0	0	1595	922	32	4	283	4	C10orf113	10	21415032	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2586714	21415032	114119715	904	125605											
ANKRD26	22852	broad.mit.edu	37	chr10	27355482	27355482	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgcggacatcatatctatCaaatgtgatacacagatata	6	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27355482	G	G	27355482	1	3	145	0	1	0	0	0	0	0	0	0	654	841	29	4		4	ANKRD26	10	27355482	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5940450	27355482	108179265	905	125606											
PTCHD3	374308	broad.mit.edu	37	chr10	27702206	27702206	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcggtcttcaggtagtacAgcagccgcatggctttggcc	12	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27702206	T	T	27702206	3	4	145	1	0	0	0	0	1	0	0	0	12840	188	7	5	1345	5	PTCHD3	10	27702206	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	346724	27702206	107832541	906	125607											
LYZL2	119180	broad.mit.edu	37	chr10	30915711	30915711	+	Frame_Shift_Del	DEL	C	-	-													aagaaataatctcacagtttCcaaggctgaagccccagtaa							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30915711	-	-	30915711	7	5	145	1	0	1	0	1	0	0	0	0	9220	855	30	0	328	0	LYZL2	10	30915711	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	3213505	30915711	104619036	907	125608											
ZEB1	6935	broad.mit.edu	37	chr10	31608219	31608219	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgaacccgcggcgcaataAcggtgagtggcggaggggac	19	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31608219	G	G	31608219	3	3	145	1	0	0	0	0	1	0	0	0	17749	43	2	5	58	5	ZEB1	10	31608219	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	692508	31608219	103926528	908	125609											
ZEB1	6935	broad.mit.edu	37	chr10	31810747	31810747	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgttccatgcttaagagcGctagctgccaataagcaaac	9	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31810747	C	C	31810747	2	2	145	1	0	0	0	0	0	0	0	1	17749	1074	38	4		4	ZEB1	10	31810747	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	202528	31810747	103724000	909	125610											
NRP1	8829	broad.mit.edu	37	chr10	33510591	33510591	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttaaaggtttgcataaatCaaaacaagacaatcttcgac	5	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33510591	G	G	33510591	1	3	145	0	1	0	0	0	0	0	0	0	10755	841	29	4		4	NRP1	10	33510591	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1699844	33510591	102024156	910	125611											
CREM	1390	broad.mit.edu	37	chr10	35495959	35495959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaacacgcaaacgagaGctgaggctaatgaaaaacag	11	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35495959	T	T	35495959	3	4	145	1	0	0	0	0	1	0	0	0	3900	962	34	3	1009	3	CREM	10	35495959	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1985368	35495959	100038788	911	125612											
ZNF25	219749	broad.mit.edu	37	chr10	38241506	38241506	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtttctctcctgtgtgaCttctctgatgagttttgagg	12	7	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38241506	A	A	38241506	3	1	145	1	0	0	0	0	1	0	0	0	17920	565	20	3	454	3	ZNF25	10	38241506	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2745547	38241506	97293241	912	125613											
BMS1	9790	broad.mit.edu	37	chr10	43297597	43297597	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgtaaggttatgaacagtAtcagagattgcttcgtgact	11	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43297597	G	G	43297597	3	3	145	1	0	0	0	0	1	0	0	0	1478	449	16	5	2306	5	BMS1	10	43297597	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	5056091	43297597	92237150	913	125614											
ZNF485	220992	broad.mit.edu	37	chr10	44100229	44100229	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaatctagaaaagaacCgtcttgatacagatttatcc	8	7	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44100229	A	A	44100229	1	1	145	0	1	0	0	0	0	0	0	0	18065	667	23	1		1	ZNF485	10	44100229	5'Flank	SNP	C	TCGA-49-6743-01A-11D-1855-08	802632	44100229	91434518	914	125615											
ZNF32	7580	broad.mit.edu	37	chr10	44139648	44139648	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccccctggtgtggaaactCttcctgcactgggtacaggc	11	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44139648	T	T	44139648	2	4	145	1	0	0	0	0	0	0	0	1	17964	912	32	4		4	ZNF32	10	44139648	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	39419	44139648	91395099	915	125616											
CXCL12	6387	broad.mit.edu	37	chr10	44866826	44866826	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccaagttctacgtgacagAttttaaaatatcttggatta	6	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44866826	C	C	44866826	1	2	145	0	1	0	0	0	0	0	0	0	4113	348	12	5		5	CXCL12	10	44866826	3'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	727178	44866826	90667921	916	125617											
ALOX5	240	broad.mit.edu	37	chr10	45891207	45891207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgcacataaagcactcgGcatgggcagggcatctgagg	13	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45891207	T	T	45891207	1	4	145	0	1	0	0	0	0	0	0	0	540	1218	42	3		3	ALOX5	10	45891207	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1024381	45891207	89643540	917	125618											
ALOX5	240	broad.mit.edu	37	chr10	45938968	45938968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctacgtgtacggcatgcGgggccgcaagtcctcaggta	14	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45938968	T	T	45938968	3	4	145	1	0	0	0	0	1	0	0	0	540	1116	39	1	1598	1	ALOX5	10	45938968	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	47761	45938968	89595779	918	125619											
ANXA8L2	244	broad.mit.edu	37	chr10	47747050	47747050	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagccagacgtgtggagtcCcagcagaggccaacctgtgt	15	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47747050	A	A	47747050	1	1	145	0	1	0	0	0	0	0	0	0	726	638	22	2		2	ANXA8L2	10	47747050	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	1808082	47747050	87787697	919	125620											
RBP3	5949	broad.mit.edu	37	chr10	48387892	48387892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggctgccttcaggtgtgGgtctccggagagcatctgca	15	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48387892	T	T	48387892	3	4	145	1	0	0	0	0	1	0	0	0	13265	1232	43	2	773	2	RBP3	10	48387892	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	640842	48387892	87146855	920	125621											
GDF10	2662	broad.mit.edu	37	chr10	48429294	48429294	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggcctgccacaggccgcGcggtgggggcgccagggcca	18	15	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48429294	C	C	48429294	3	2	145	1	0	0	0	0	1	0	0	0	6375	1087	38	4	852	4	GDF10	10	48429294	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	41402	48429294	87105453	921	125622											
CHAT	1103	broad.mit.edu	37	chr10	50828525	50828525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggatgtgacggccttccCtgccctccccggcaggtgtc	15	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50828525	T	T	50828525	1	4	145	0	1	0	0	0	0	0	0	0	3344	696	24	4		4	CHAT	10	50828525	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2399231	50828525	84706222	922	125623											
OGDHL	55753	broad.mit.edu	37	chr10	50966631	50966631	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggacggcagcagcctcagcTgactcattctggacacaggc	13	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50966631	A	A	50966631	3	1	145	1	0	0	0	0	1	0	0	0	10935	1580	55	5	3112	5	OGDHL	10	50966631	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	138106	50966631	84568116	923	125624											
AGAP7	653268	broad.mit.edu	37	chr10	51472576	51472576	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttattgtcattgtaagataaTgctggatggctgtgctgtca	11	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51472576	A	A	51472576	3	1	145	1	0	0	0	0	1	0	0	0	373	1464	51	5	1603	5	AGAP7	10	51472576	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	505945	51472576	84062171	924	125625											
FAM21A	387680	broad.mit.edu	37	chr10	51829550	51829550	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaataacttactgttaggttCcctcctaaattttggtggaa	7	7	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51829550	T	T	51829550	1	4	145	0	1	0	0	0	0	0	0	0	5587	870	30	4		4	FAM21A	10	51829550	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	356974	51829550	83705197	925	125626											
SGMS1	259230	broad.mit.edu	37	chr10	52070940	52070940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcttcagcagattttcCagaaaatgagctttaccaga	7	9	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52070940	A	A	52070940	1	1	145	0	1	0	0	0	0	0	0	0	14327	609	21	2		2	SGMS1	10	52070940	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	241390	52070940	83463807	926	125627											
PRKG1	5592	broad.mit.edu	37	chr10	53564515	53564515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccctattatctgaaatgCagcaccctgaatttcagggt	8	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53564515	A	A	53564515	1	1	145	0	1	0	0	0	0	0	0	0	12628	725	25	3		3	PRKG1	10	53564515	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1493575	53564515	81970232	927	125628											
PRKG1	5592	broad.mit.edu	37	chr10	53667407	53667407	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctttcacagctgtgtgatGaggaatcacaaactgcagag	10	8	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53667407	A	A	53667407	1	1	145	0	1	0	0	0	0	0	0	0	12628	1305	45	4		4	PRKG1	10	53667407	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	102892	53667407	81867340	928	125629											
PCDH15	65217	broad.mit.edu	37	chr10	55617003	55617003	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacaatgacttgcatatcCagctgattgaccacggagac	9	10	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55617003	T	T	55617003	2	4	145	1	0	0	0	0	0	0	0	1	11605	581	21	4		4	PCDH15	10	55617003	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1949596	55617003	79917744	929	125630											
BICC1	80114	broad.mit.edu	37	chr10	60549635	60549635	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtaatccacaaaagaaatCtaccgtctacctccagggca	6	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60549635	T	T	60549635	3	4	145	1	0	0	0	0	1	0	0	0	1433	913	32	4	1019	4	BICC1	10	60549635	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	4932632	60549635	74985112	930	125631											
EGR2	1959	broad.mit.edu	37	chr10	64573365	64573365	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaccgccggtcgcagccttCtgctgggcacgggtagggcc	16	14	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64573365	G	G	64573365	3	3	145	1	0	0	0	0	1	0	0	0	5012	922	32	4	401	4	EGR2	10	64573365	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	4023730	64573365	70961382	931	125632											
CCAR1	55749	broad.mit.edu	37	chr10	70515061	70515061	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtttgtacctttccttctCaagtatcttattggtaattt	6	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70515061	G	G	70515061	1	3	145	0	1	0	0	0	0	0	0	0	2756	841	29	4		4	CCAR1	10	70515061	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5941696	70515061	65019686	932	125633											
CCAR1	55749	broad.mit.edu	37	chr10	70516155	70516155	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcattgccttcccacccgctCagagtgggaaaccctctccc	8	18	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70516155	G	G	70516155	4	3	145	1	0	0	0	0	0	1	0	0	2756	838	29	4	1801	4	CCAR1	10	70516155	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1094	70516155	65018592	933	125634											
KIAA1274	27143	broad.mit.edu	37	chr10	72324037	72324037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggatcaccctgccctggCactcagggcagcagggtggc	15	14	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72324037	A	A	72324037	1	1	145	0	1	0	0	0	0	0	0	0	8290	725	25	3		3	KIAA1274	10	72324037	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1807882	72324037	63210710	934	125635											
TTC18	118491	broad.mit.edu	37	chr10	75107969	75107969	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgcacagggtgcaatggaActgttgtttgaaatgaactc	11	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75107969	T	T	75107969	3	4	145	1	0	0	0	0	1	0	0	0	16811	43	2	5	3087	5	TTC18	10	75107969	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	2783932	75107969	60426778	935	125636											
PPP3CB	5532	broad.mit.edu	37	chr10	75239055	75239055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacataataaaaataataccCaaaacatgaataagcttacc	3	8	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75239055	A	A	75239055	1	1	145	0	1	0	0	0	0	0	0	0	12499	609	21	2		2	PPP3CB	10	75239055	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	131086	75239055	60295692	936	125637											
PLAU	5328	broad.mit.edu	37	chr10	75671310	75671310	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctagcgccccgacctcgcCaccatgagagccctgctggc	11	18	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75671310	T	T	75671310	1	4	145	0	1	0	0	0	0	0	0	0	12117	609	21	4		4	PLAU	10	75671310	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	432255	75671310	59863437	937	125638											
VDAC2	7417	broad.mit.edu	37	chr10	76981983	76981983	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttattacattgtctattctaGatctactaatttaaaatatc	2	6	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76981983	C	C	76981983	1	2	145	0	1	0	0	0	0	0	0	0	17274	957	33	4		4	VDAC2	10	76981983	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1310673	76981983	58552764	938	125639											
KCNMA1	3778	broad.mit.edu	37	chr10	78771761	78771761	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttttattcttttgggatCtgtgatgtcatcatgacagg	9	5	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78771761	T	T	78771761	3	4	145	1	0	0	0	0	1	0	0	0	8143	913	32	4	1854	4	KCNMA1	10	78771761	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1789778	78771761	56762986	939	125640											
POLR3A	11128	broad.mit.edu	37	chr10	79782083	79782083	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggttcatcagaagtagaggAacatcttcagctgggattcg	13	7	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79782083	T	T	79782083	2	4	145	1	0	0	0	0	0	0	0	1	12323	233	9	5		5	POLR3A	10	79782083	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	1010322	79782083	55752664	940	125641											
ZMIZ1	57178	broad.mit.edu	37	chr10	81052058	81052058	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctacagccacagccacggCcactgtggcagccctgcagg	12	16	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81052058	T	T	81052058	3	4	145	1	0	0	0	0	1	0	0	0	17822	739	26	4	928	4	ZMIZ1	10	81052058	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1269975	81052058	54482689	941	125642											
ANXA11	311	broad.mit.edu	37	chr10	81928909	81928909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggctggcccggcacagggGcccctgggtatggcggatat	18	11	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81928909	C	C	81928909	3	2	145	1	0	0	0	0	1	0	0	0	716	1203	42	4	1188	4	ANXA11	10	81928909	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	876851	81928909	53605838	942	125643											
CDHR1	92211	broad.mit.edu	37	chr10	85957609	85957609	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggtgagtgcacgtccaaGgcagtccctggcagcctgca	13	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85957609	A	A	85957609	1	1	145	0	1	0	0	0	0	0	0	0	3148	1015	35	4		4	CDHR1	10	85957609	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4028700	85957609	49577138	943	125644											
CDHR1	92211	broad.mit.edu	37	chr10	85961591	85961591	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccatttgccgtggaccGccacagcggtgtgctgcgcc	12	17	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85961591	A	A	85961591	3	1	145	1	0	0	0	0	1	0	0	0	3148	1087	38	4	580	4	CDHR1	10	85961591	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3982	85961591	49573156	944	125645											
RGR	5995	broad.mit.edu	37	chr10	86018323	86018323	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcaactatgccctgggCaatgagatggtctgcagggg	14	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86018323	A	A	86018323	2	1	145	1	0	0	0	0	0	0	0	1	13400	697	25	3		3	RGR	10	86018323	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	56732	86018323	49516424	945	125646											
BMPR1A	657	broad.mit.edu	37	chr10	88651855	88651855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctatgtgaatttatgttTtgttttgttttgtttttttc	6	2	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88651855	A	A	88651855	1	1	145	0	1	0	0	0	0	0	0	0	1475	1856	64	5		5	BMPR1A	10	88651855	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2633532	88651855	46882892	946	125647											
STAMBPL1	57559	broad.mit.edu	37	chr10	90706914	90706914	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaagtacagttgagcaAtgtgagccagttatttcccc	9	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90706914	C	C	90706914	1	2	145	0	1	0	0	0	0	0	0	0	15369	116	4	5		5	STAMBPL1	10	90706914	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2055059	90706914	44827833	947	125648											
LIPA	3988	broad.mit.edu	37	chr10	90982123	90982123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcaaaagcaacacaagcaCgatgacaaaaacccaggact	6	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90982123	A	A	90982123	1	1	145	0	1	0	0	0	0	0	0	0	8892	551	19	3		3	LIPA	10	90982123	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	275209	90982123	44552624	948	125649											
TNKS2	80351	broad.mit.edu	37	chr10	93604783	93604783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacataatgcagcatcttacGgggtaagttcttccgtgtta	9	8	2	0	rs145701051		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93604783	T	T	93604783	3	4	145	1	0	0	0	0	1	0	0	0	16444	1116	39	1	2233	1	TNKS2	10	93604783	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2622660	93604783	41929964	949	125650											
CYP26A1	1592	broad.mit.edu	37	chr10	94836214	94836214	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggggccctttgggtttagTctccacttaagccctgttta	10	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94836214	C	C	94836214	1	2	145	0	1	0	0	0	0	0	0	0	4188	1682	58	5		5	CYP26A1	10	94836214	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1231431	94836214	40698533	950	125651											
GPR120	338557	broad.mit.edu	37	chr10	95335955	95335955	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaggactggtcattgtgatCagttactccaaaattttaca	7	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95335955	T	T	95335955	2	4	145	1	0	0	0	0	0	0	0	1	6701	816	29	4		4	GPR120	10	95335955	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	499741	95335955	40198792	951	125652											
PLCE1	51196	broad.mit.edu	37	chr10	95791158	95791158	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accatcagcatggccttcctCagagacaattttatgaaatg	7	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95791158	T	T	95791158	4	4	145	1	0	0	0	0	0	1	0	0	12129	827	29	4	357	4	PLCE1	10	95791158	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	455203	95791158	39743589	952	125653											
TBC1D12	23232	broad.mit.edu	37	chr10	96259974	96259974	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttctcctcctttaattCtaggcgtagtacaagaagag	7	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96259974	G	G	96259974	1	3	145	0	1	0	0	0	0	0	0	0	15720	928	32	4		4	TBC1D12	10	96259974	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	468816	96259974	39274773	953	125654											
CYP2C19	1557	broad.mit.edu	37	chr10	96609762	96609762	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgaccctcgtcactttcTggatgaaggtggaaatttta	10	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96609762	C	C	96609762	3	2	145	1	0	0	0	0	1	0	0	0	4199	1580	55	5	1268	5	CYP2C19	10	96609762	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	349788	96609762	38924985	954	125655											
RRP12	23223	broad.mit.edu	37	chr10	99116936	99116936	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcctttgaactgtcccTgcagcttcatcttcttcctg	7	15	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99116936	C	C	99116936	3	2	145	1	0	0	0	0	1	0	0	0	13797	1580	55	5	88	5	RRP12	10	99116936	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	2507174	99116936	36417811	955	125656											
PGAM1	5223	broad.mit.edu	37	chr10	99191974	99191974	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggggccattccctgggttCagaactactataaagatcag	11	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99191974	T	T	99191974	1	4	145	0	1	0	0	0	0	0	0	0	11868	841	29	4		4	PGAM1	10	99191974	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	75038	99191974	36342773	956	125657											
GOT1	2805	broad.mit.edu	37	chr10	101157291	101157291	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctactttggtggtactggacGggtggtgtttcttcactgga	14	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101157291	A	A	101157291	1	1	145	0	1	0	0	0	0	0	0	0	6643	1131	39	4		4	GOT1	10	101157291	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	1965317	101157291	34377456	957	125658											
SUFU	51684	broad.mit.edu	37	chr10	104269087	104269087	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atatgccacctgttctttatCcagagccttattcctgaggt	7	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104269087	G	G	104269087	1	3	145	0	1	0	0	0	0	0	0	0	15486	870	30	4		4	SUFU	10	104269087	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3111796	104269087	31265660	958	125659											
PDCD11	22984	broad.mit.edu	37	chr10	105166351	105166351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttccttttggggcctgGgtctgggcttacaggtgcta	13	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105166351	T	T	105166351	1	4	145	0	1	0	0	0	0	0	0	0	11711	1247	43	2		2	PDCD11	10	105166351	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	897264	105166351	30368396	959	125660											
C10orf79	80217	broad.mit.edu	37	chr10	105902162	105902162	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgctttacctaaagaaacCaagccagaaacatgtcagaa	6	10	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105902162	G	G	105902162	1	3	145	0	1	0	0	0	0	0	0	0	1629	609	21	4		4	C10orf79	10	105902162	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	735811	105902162	29632585	960	125661											
C10orf79	80217	broad.mit.edu	37	chr10	105939596	105939596	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaccccatgtttcacaaatAcctcttggcttttttgttgt	5	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105939596	T	T	105939596	5	4	145	1	0	0	0	0	0	0	1	0	1629	405	14	5	2697	5	C10orf79	10	105939596	Splice_Site	SNP	A	TCGA-49-6743-01A-11D-1855-08	37434	105939596	29595151	961	125662											
CCDC147	159686	broad.mit.edu	37	chr10	106118130	106118130	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagcaagtcctggaagaatCtgcatttgaagaaatggaaa	10	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106118130	A	A	106118130	3	1	145	1	0	0	0	0	1	0	0	0	2807	913	32	3	47	3	CCDC147	10	106118130	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	178534	106118130	29416617	962	125663											
SORCS3	22986	broad.mit.edu	37	chr10	106675475	106675475	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttttatctctgaagcactCatatgattcgggaagaaagg	9	7	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106675475	G	G	106675475	1	3	145	0	1	0	0	0	0	0	0	0	15046	841	29	4		4	SORCS3	10	106675475	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	557345	106675475	28859272	963	125664											
SORCS3	22986	broad.mit.edu	37	chr10	106982828	106982828	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggtgtgatacagtttgaCcacatccagaatataaacac	9	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106982828	G	G	106982828	1	3	145	0	1	0	0	0	0	0	0	0	15046	522	18	4		4	SORCS3	10	106982828	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	307353	106982828	28551919	964	125665											
SORCS1	114815	broad.mit.edu	37	chr10	108366795	108366795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatacacctaccatgaatgCtcttgcatgtgcttttggtg	8	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108366795	A	A	108366795	1	1	145	0	1	0	0	0	0	0	0	0	15044	812	28	3		3	SORCS1	10	108366795	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1383967	108366795	27167952	965	125666											
ADD3	120	broad.mit.edu	37	chr10	111878420	111878420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgaccatacaggattcagtCcccatgctgcaatctattca	6	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111878420	A	A	111878420	3	1	145	1	0	0	0	0	1	0	0	0	306	855	30	3	661	3	ADD3	10	111878420	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3511625	111878420	23656327	966	125667											
TDRD1	56165	broad.mit.edu	37	chr10	115987680	115987680	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttttagaaaagatgtatAggatgaattgctgctgcaca	10	5	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115987680	G	G	115987680	3	3	145	1	0	0	0	0	1	0	0	0	15852	411	15	5	3505	5	TDRD1	10	115987680	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	4109260	115987680	19547067	967	125668											
ATRNL1	26033	broad.mit.edu	37	chr10	117026331	117026331	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatgatatccttgtataCaagcctccaaattgcaaggc	6	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117026331	A	A	117026331	4	1	145	1	0	0	0	0	0	1	0	0	1211	489	17	3	1876	3	ATRNL1	10	117026331	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1038651	117026331	18508416	968	125669											
GFRA1	2674	broad.mit.edu	37	chr10	117884855	117884855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcaggcgatgtcccggCaggagcagaagagcattccg	15	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117884855	A	A	117884855	3	1	145	1	0	0	0	0	1	0	0	0	6411	710	25	3	774	3	GFRA1	10	117884855	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	858524	117884855	17649892	969	125670											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118187611	118187611	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taataagttctttaaaaataAtgagtatacttacatctaaa	3	4	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118187611	T	T	118187611	1	4	145	0	1	0	0	0	0	0	0	0	12247	116	4	5		5	PNLIPRP3	10	118187611	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	302756	118187611	17347136	970	125671											
PNLIP	5406	broad.mit.edu	37	chr10	118307005	118307005	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actaagttctttgggaggccGaggcgggcggttcacgaggt	17	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118307005	A	A	118307005	1	1	145	0	1	0	0	0	0	0	0	0	12244	1073	37	4		4	PNLIP	10	118307005	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	119394	118307005	17227742	971	125672											
HSPA12A	259217	broad.mit.edu	37	chr10	118434464	118434464	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggagcgtgccacacttcTtcaccccgggatcagtgatg	13	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118434464	G	G	118434464	3	3	145	1	0	0	0	0	1	0	0	0	7473	1609	56	5	175	5	HSPA12A	10	118434464	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	127459	118434464	17100283	972	125673											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119768422	119768422	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatgaaacctgatagtgTagtctctttcagtaacaagt	8	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119768422	C	C	119768422	1	2	145	0	1	0	0	0	0	0	0	0	13002	1653	57	5		5	RAB11FIP2	10	119768422	3'UTR	SNP	T	TCGA-49-6743-01A-11D-1855-08	1333958	119768422	15766325	973	125674											
C10orf84	63877	broad.mit.edu	37	chr10	120070916	120070916	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaataattgagaacttgtggGtaagaaagccatgtctagaa	10	4	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120070916	C	C	120070916	1	2	145	0	1	0	0	0	0	0	0	0	1632	1276	44	4		4	C10orf84	10	120070916	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	302494	120070916	15463831	974	125675											
INPP5F	22876	broad.mit.edu	37	chr10	121583434	121583434	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgagtatactgcttctctCaagaataaaggcattcttat	8	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121583434	G	G	121583434	1	3	145	0	1	0	0	0	0	0	0	0	7828	841	29	4		4	INPP5F	10	121583434	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1512518	121583434	13951313	975	125676											
SEC23IP	11196	broad.mit.edu	37	chr10	121652418	121652418	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccttcatcccagtcaccCaggcctccgcttctccggcc	7	21	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121652418	T	T	121652418	4	4	145	1	0	0	0	0	0	1	0	0	14106	595	21	4	126	4	SEC23IP	10	121652418	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	68984	121652418	13882329	976	125677											
SEC23IP	11196	broad.mit.edu	37	chr10	121657897	121657897	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcgtatctgcggagtgaTagagtaccctttaaaccaca	9	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121657897	C	C	121657897	1	2	145	0	1	0	0	0	0	0	0	0	14106	1421	49	5		5	SEC23IP	10	121657897	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	5479	121657897	13876850	977	125678											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122273465	122273465	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctgttatttgtgtggtgAaaattatccggcgaacagac	12	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122273465	G	G	122273465	3	3	145	1	0	0	0	0	1	0	0	0	12389	247	9	5	218	5	PPAPDC1A	10	122273465	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	615568	122273465	13261282	978	125679											
DMBT1	1755	broad.mit.edu	37	chr10	124377606	124377606	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgagtggaggtcctataCcaaggctcctggggcaccgt	15	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124377606	A	A	124377606	4	1	145	1	0	0	0	0	0	1	0	0	4617	518	18	3	4728	3	DMBT1	10	124377606	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2104141	124377606	11157141	979	125680											
CPXM2	119587	broad.mit.edu	37	chr10	125514291	125514291	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgatgaacctgctcagcaaaCatgagacacagggtgaggtc	12	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125514291	G	G	125514291	1	3	145	0	1	0	0	0	0	0	0	0	3870	493	17	4		4	CPXM2	10	125514291	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1136685	125514291	10020456	980	125681											
ZRANB1	54764	broad.mit.edu	37	chr10	126670462	126670462	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtagtctaaactggtttAtttgagcaaaccatgttggg	10	6	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126670462	G	G	126670462	1	3	145	0	1	0	0	0	0	0	0	0	18351	464	16	5		5	ZRANB1	10	126670462	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1156171	126670462	8864285	981	125682											
C10orf137	26098	broad.mit.edu	37	chr10	127442261	127442261	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataactttttgttgtttttAgcctaagagtggtgacgccg	10	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127442261	G	G	127442261	5	3	145	1	0	0	0	0	0	0	1	0	1605	434	15	5	3380	5	C10orf137	10	127442261	Splice_Site	SNP	A	TCGA-49-6743-01A-11D-1855-08	771799	127442261	8092486	982	125683											
ADAM12	8038	broad.mit.edu	37	chr10	127798492	127798492	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctctcaatctaaacacttTaggttgagaatgtatatccc	6	9	3	1	rs138856040	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127798492	C	C	127798492	1	2	145	0	1	0	0	0	0	0	0	0	236	1769	61	5		5	ADAM12	10	127798492	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	356231	127798492	7736255	983	125684											
MKI67	4288	broad.mit.edu	37	chr10	129903225	129903225	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgccaggtaaatttccTggcaggtccaatttctgcac	9	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129903225	C	C	129903225	2	2	145	1	0	0	0	0	0	0	0	1	9691	1567	55	5		5	MKI67	10	129903225	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	2104733	129903225	5631522	984	125685											
DPYSL4	10570	broad.mit.edu	37	chr10	134010507	134010507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagccccacccaggacgcCaccacttctcttcccagatg	7	20	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134010507	A	A	134010507	1	1	145	0	1	0	0	0	0	0	0	0	4789	609	21	2		2	DPYSL4	10	134010507	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4107282	134010507	1524240	985	125686											
LRRC27	80313	broad.mit.edu	37	chr10	134175165	134175165	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttatttcatgagcatgCactgaggagccctgaaactc	9	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134175165	T	T	134175165	1	4	145	0	1	0	0	0	0	0	0	0	9068	725	25	4		4	LRRC27	10	134175165	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	164658	134175165	1359582	986	125687											
CYP2E1	1571	broad.mit.edu	37	chr10	135347240	135347240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagccccttctcctccgGtctgtctccggtatcacagg	9	16	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135347240	T	T	135347240	1	4	145	0	1	0	0	0	0	0	0	0	4203	1276	44	3		3	CYP2E1	10	135347240	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1172075	135347240	187507	987	125688											
MUC5B	727897	broad.mit.edu	37	chr11	1267369	1267369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagaacagaccaccacaCccatggccaccatgtccaca	5	19	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1267369	A	A	1267369	3	1	145	1	0	0	0	0	1	0	0	0	10073	507	18	3	9390	3	MUC5B	11	1267369	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08		1267369	133739147	988	125689											
MUC5B	727897	broad.mit.edu	37	chr11	1267459	1267460	+	Missense_Mutation	DNP	AG	TT	TT													ccacgaaggccaccacgacaAgggccaccagttccatgtcc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1267460	TT	TT	1267459	3	4	145	1	0	0	0	0	1	0	0	0	10073	63	3	5	9480	5	MUC5B	11	1267459	Missense_Mutation	DNP	AG	TCGA-49-6743-01A-11D-1855-08	90	1267459	133739057	989	125690											
OSBPL5	114879	broad.mit.edu	37	chr11	3114894	3114894	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgataaacacgtccctgtcCtgccccagatggccagcggg	11	14	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3114894	A	A	3114894	5	1	145	1	0	0	0	0	0	0	1	0	11374	695	24	2	854	2	OSBPL5	11	3114894	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	1847435	3114894	131891622	990	125691											
OSBPL5	114879	broad.mit.edu	37	chr11	3140893	3140893	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatctgggtgtcacccgaGgcaacacccagggccagctg	14	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3140893	A	A	3140893	1	1	145	0	1	0	0	0	0	0	0	0	11374	1015	35	4		4	OSBPL5	11	3140893	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	25999	3140893	131865623	991	125692											
OR52B4	143496	broad.mit.edu	37	chr11	4389382	4389382	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgctttgtgaggataatgaaGatgagcaggctgttcccaag	13	7	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4389382	T	T	4389382	2	4	145	1	0	0	0	0	0	0	0	1	11206	932	33	3		3	OR52B4	11	4389382	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1248489	4389382	130617134	992	125693											
TRIM21	6737	broad.mit.edu	37	chr11	4411246	4411246	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcacctggtactcctgtgCagcctcctcaagagggacca	9	16	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4411246	T	T	4411246	3	4	145	1	0	0	0	0	1	0	0	0	16619	710	25	4	1057	4	TRIM21	11	4411246	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	21864	4411246	130595270	993	125694											
UBQLN3	50613	broad.mit.edu	37	chr11	5529825	5529825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggtgcatcctgatcccCatcctgccttccttgcctgc	8	17	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5529825	A	A	5529825	3	1	145	1	0	0	0	0	1	0	0	0	17024	594	21	2	1007	2	UBQLN3	11	5529825	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1118579	5529825	129476691	994	125695											
UBQLNL	143630	broad.mit.edu	37	chr11	5537603	5537603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacttgaagagatatttttGtctgccagcagacctgatgg	11	8	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5537603	T	T	5537603	3	4	145	1	0	0	0	0	1	0	0	0	17026	1368	48	3	1362	3	UBQLNL	11	5537603	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	7778	5537603	129468913	995	125696											
OR56B1	387748	broad.mit.edu	37	chr11	5758321	5758321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgtgctctaaccttgGggtcacaagcctggcttgtg	12	12	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5758321	T	T	5758321	3	4	145	1	0	0	0	0	1	0	0	0	11231	1232	43	2	577	2	OR56B1	11	5758321	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	220718	5758321	129248195	996	125697											
CNGA4	1262	broad.mit.edu	37	chr11	6261279	6261279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaggtccgcttcctacCggctccctctccccaggatt	8	18	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6261279	A	A	6261279	1	1	145	0	1	0	0	0	0	0	0	0	3631	667	23	1		1	CNGA4	11	6261279	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	502958	6261279	128745237	997	125698											
DNHD1	144132	broad.mit.edu	37	chr11	6588995	6588995	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaacatagtcaggctactCagcccatgctgatcttgttg	8	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6588995	T	T	6588995	4	4	145	1	0	0	0	0	0	1	0	0	4708	827	29	4	12399	4	DNHD1	11	6588995	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	327716	6588995	128417521	998	125699											
INSC	387755	broad.mit.edu	37	chr11	15260636	15260636	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctgtgagtggtgctttcTggctgtggctggagtggagt	18	6	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15260636	A	A	15260636	1	1	145	0	1	0	0	0	0	0	0	0	7834	1595	55	5		5	INSC	11	15260636	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	8671641	15260636	119745880	999	125700											
ABCC8	6833	broad.mit.edu	37	chr11	17483331	17483331	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtcttgcaggtcctcGggaggcttcacctccctcgg	12	16	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17483331	T	T	17483331	2	4	145	1	0	0	0	0	0	0	0	1	58	1103	39	1		1	ABCC8	11	17483331	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2222695	17483331	117523185	1000	125701											
MRGPRX1	259249	broad.mit.edu	37	chr11	18955953	18955953	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagcggtaccagatggGccacaggacggacaggcagc	17	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18955953	C	C	18955953	3	2	145	1	0	0	0	0	1	0	0	0	9860	1203	42	4	593	4	MRGPRX1	11	18955953	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1472622	18955953	116050563	1001	125702											
SLC6A5	9152	broad.mit.edu	37	chr11	20657894	20657894	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttacccggaagccttaaccAggctgcctctctctccgttc	7	16	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20657894	T	T	20657894	3	4	145	1	0	0	0	0	1	0	0	0	14801	179	7	5	1708	5	SLC6A5	11	20657894	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1701941	20657894	114348622	1002	125703											
NELL1	4745	broad.mit.edu	37	chr11	20959473	20959473	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagatgtgtgggctttagatGaggttcttgagtggggcata	16	3	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20959473	A	A	20959473	1	1	145	0	1	0	0	0	0	0	0	0	10428	1305	45	4		4	NELL1	11	20959473	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	301579	20959473	114047043	1003	125704											
LUZP2	338645	broad.mit.edu	37	chr11	24759748	24759748	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attattttctcacttatgctCtgttttctactaaaatagag	4	7	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24759748	A	A	24759748	1	1	145	0	1	0	0	0	0	0	0	0	9174	928	32	3		3	LUZP2	11	24759748	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3800275	24759748	110246768	1004	125705											
LUZP2	338645	broad.mit.edu	37	chr11	25099005	25099005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcatttattggatccattGtatttatttatttattttta	4	3	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25099005	T	T	25099005	1	4	145	0	1	0	0	0	0	0	0	0	9174	1392	48	3		3	LUZP2	11	25099005	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	339257	25099005	109907511	1005	125706											
LGR4	55366	broad.mit.edu	37	chr11	27393064	27393064	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaggatcctctagtaccatCcctattacagaaatcacatc	4	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27393064	A	A	27393064	1	1	145	0	1	0	0	0	0	0	0	0	8828	870	30	3		3	LGR4	11	27393064	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2294059	27393064	107613452	1006	125707											
KCNA4	3739	broad.mit.edu	37	chr11	30033301	30033301	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggacggacacaatggctaTgccccttgcaggactggagc	13	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30033301	G	G	30033301	3	3	145	1	0	0	0	0	1	0	0	0	8075	1464	51	5	1040	5	KCNA4	11	30033301	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	2640237	30033301	104973215	1007	125708											
WT1	7490	broad.mit.edu	37	chr11	32437906	32437907	+	Intron	DEL	GA	-	-													aagaagaggtgggggcggggGagagagattcttcccatcca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32437907	-	-	32437906	6	5	145	0	1	1	0	1	0	0	0	0	17535	1189	41	0		0	WT1	11	32437906	Intron	DEL	GA	TCGA-49-6743-01A-11D-1855-08	2404605	32437906	102568610	1008	125709											
WT1	7490	broad.mit.edu	37	chr11	32456225	32456225	+	Intron	SNP	G	A	A													ccactgccccgcgcgtagggGgcgctccccggcctacttac							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32456225	A	A	32456225	1	1	145	0	1	0	0	0	0	0	0	0	17535	1247	43	4		4	WT1	11	32456225	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	18319	32456225	102550291	1009	125710	546	2									
WT1	7490	broad.mit.edu	37	chr11	32456227	32456227	+	Intron	SNP	C	G	G													actgccccgcgcgtagggggCgctccccggcctacttaccc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32456227	G	G	32456227	1	3	145	0	1	0	0	0	0	0	0	0	17535	783	27	4		4	WT1	11	32456227	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2	32456227	102550289	1010	125711	546	2									
C11orf41	25758	broad.mit.edu	37	chr11	33566428	33566428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgctaagggcaccagcagCagccctttggccgtggcctc	13	14	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33566428	A	A	33566428	3	1	145	1	0	0	0	0	1	0	0	0	1652	709	25	3	2022	3	C11orf41	11	33566428	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1110201	33566428	101440088	1011	125712											
PAMR1	25891	broad.mit.edu	37	chr11	35457397	35457397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagggttaatggtttttctcAggcagtcatgaaagattgag	12	4	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35457397	T	T	35457397	1	4	145	0	1	0	0	0	0	0	0	0	11507	203	7	5		5	PAMR1	11	35457397	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1890969	35457397	99549119	1012	125713											
HSD17B12	51144	broad.mit.edu	37	chr11	43775601	43775601	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttactgtttcagttagcAaagcatggaatgaaggttgt	10	6	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43775601	G	G	43775601	2	3	145	1	0	0	0	0	0	0	0	1	7448	117	5	5		5	HSD17B12	11	43775601	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	8318204	43775601	91230915	1013	125714											
SYT13	57586	broad.mit.edu	37	chr11	45268092	45268092	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaaggagatgcaggagggGagtctcacctggggacgcct	17	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45268092	T	T	45268092	1	4	145	0	1	0	0	0	0	0	0	0	15588	1189	41	3		3	SYT13	11	45268092	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1492491	45268092	89738424	1014	125715											
SYT13	57586	broad.mit.edu	37	chr11	45275815	45275815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgagagtcaaataagagCcataccttccaggcgagtca	9	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45275815	A	A	45275815	1	1	145	0	1	0	0	0	0	0	0	0	15588	754	26	3		3	SYT13	11	45275815	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	7723	45275815	89730701	1015	125716											
ARHGAP1	392	broad.mit.edu	37	chr11	46703732	46703732	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagggtgtgcttcaggtaCcttccagggaaaagccctgc	12	12	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46703732	T	T	46703732	2	4	145	1	0	0	0	0	0	0	0	1	863	521	18	4		4	ARHGAP1	11	46703732	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1427917	46703732	88302784	1016	125717											
CKAP5	9793	broad.mit.edu	37	chr11	46772989	46772989	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcttcagtttctctttgggGaagaccttcatgaaaatgtg	10	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46772989	A	A	46772989	2	1	145	1	0	0	0	0	0	0	0	1	3476	1165	41	4		4	CKAP5	11	46772989	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	69257	46772989	88233527	1017	125718											
ARFGAP2	84364	broad.mit.edu	37	chr11	47187910	47187910	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgggcaatgtccgctgtaGgcagcacgttccccagagat	12	12	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47187910	A	A	47187910	3	1	145	1	0	0	0	0	1	0	0	0	852	1000	35	4	119	4	ARFGAP2	11	47187910	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	414921	47187910	87818606	1018	125719											
MYBPC3	4607	broad.mit.edu	37	chr11	47363610	47363610	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattcttcagccacacaccCcgaacattctcatctgagac	4	17	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47363610	T	T	47363610	2	4	145	1	0	0	0	0	0	0	0	1	10107	610	22	4		4	MYBPC3	11	47363610	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	175700	47363610	87642906	1019	125720											
AGBL2	79841	broad.mit.edu	37	chr11	47712125	47712125	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggaaactgaatggtccaCgtgagacagtagaagggctg	14	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47712125	A	A	47712125	2	1	145	1	0	0	0	0	0	0	0	1	376	523	19	3		3	AGBL2	11	47712125	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	348515	47712125	87294391	1020	125721											
OR4S1	256148	broad.mit.edu	37	chr11	48328183	48328183	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagccatcatggattgcCggaagtgtggcctgctagcg	13	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48328183	A	A	48328183	2	1	145	1	0	0	0	0	0	0	0	1	11176	643	23	1		1	OR4S1	11	48328183	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	616058	48328183	86678333	1021	125722											
OR4C3	256144	broad.mit.edu	37	chr11	48346634	48346634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctcacagaactcagagGtacagagagttctctttgtg	11	9	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48346634	T	T	48346634	3	4	145	1	0	0	0	0	1	0	0	0	11144	1261	44	3	144	3	OR4C3	11	48346634	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	18451	48346634	86659882	1022	125723											
FOLH1	2346	broad.mit.edu	37	chr11	49168333	49168333	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacttcactcaaagtctctGcagctgcctgcactgtgaag	8	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49168333	A	A	49168333	3	1	145	1	0	0	0	0	1	0	0	0	6037	1319	46	4	28	4	FOLH1	11	49168333	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	821699	49168333	85838183	1023	125724											
FOLH1	2346	broad.mit.edu	37	chr11	49179509	49179509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatttgtttacctgggCatgccactgaactctgggga	10	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49179509	A	A	49179509	3	1	145	1	0	0	0	0	1	0	0	0	6037	710	25	3	749	3	FOLH1	11	49179509	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	11176	49179509	85827007	1024	125725											
OR4A5	81318	broad.mit.edu	37	chr11	51411635	51411635	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaacaggtctaacatatAtgaaaatacagggtacaaaa	7	5	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51411635	G	G	51411635	3	3	145	1	0	0	0	0	1	0	0	0	11137	449	16	5	190	5	OR4A5	11	51411635	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	2232126	51411635	83594881	1025	125726											
OR4A5	81318	broad.mit.edu	37	chr11	51411646	51411647	+	Missense_Mutation	DNP	GG	TT	TT													ctaacatatatgaaaatacaGggtacaaaaaagaggacaac							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51411647	TT	TT	51411646	3	4	145	1	0	0	0	0	1	0	0	0	11137	987	35	2	201	2	OR4A5	11	51411646	Missense_Mutation	DNP	GG	TCGA-49-6743-01A-11D-1855-08	11	51411646	83594870	1026	125727											
OR4C15	81309	broad.mit.edu	37	chr11	55322489	55322489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttatgtgtgacttgtaccCgttactggagcttgcctgca	10	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55322489	A	A	55322489	3	1	145	1	0	0	0	0	1	0	0	0	11142	652	23	1	709	1	OR4C15	11	55322489	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3910843	55322489	79684027	1027	125728											
OR4C15	81309	broad.mit.edu	37	chr11	55322750	55322750	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctttttcccttgacaaaaTggcggcaatattttatatca	6	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55322750	C	C	55322750	3	2	145	1	0	0	0	0	1	0	0	0	11142	1464	51	5	970	5	OR4C15	11	55322750	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	261	55322750	79683766	1028	125729											
OR4C16	219428	broad.mit.edu	37	chr11	55339835	55339835	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctacttccataacccctAgaatgattgtggatgccctt	6	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55339835	G	G	55339835	3	3	145	1	0	0	0	0	1	0	0	0	11143	412	15	5	234	5	OR4C16	11	55339835	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	17085	55339835	79666681	1029	125730											
OR4C6	219432	broad.mit.edu	37	chr11	55433513	55433513	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctatacactgaggaatgcaGaggtgaaaagtgccatgaag	12	6	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55433513	A	A	55433513	3	1	145	1	0	0	0	0	1	0	0	0	11146	943	33	4	873	4	OR4C6	11	55433513	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	93678	55433513	79573003	1030	125731											
OR5L2	26338	broad.mit.edu	37	chr11	55595315	55595315	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggtggccactttgaatgaGagtgttaccatcatgatcat	10	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55595315	T	T	55595315	3	4	145	1	0	0	0	0	1	0	0	0	11265	933	33	3	623	3	OR5L2	11	55595315	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	161802	55595315	79411201	1031	125732											
SPRYD5	84767	broad.mit.edu	37	chr11	55656573	55656573	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattgattcagatagtgaTactgccttgtgctggttgta	10	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55656573	C	C	55656573	1	2	145	0	1	0	0	0	0	0	0	0	15229	1421	49	5		5	SPRYD5	11	55656573	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	61258	55656573	79349943	1032	125733											
OR5J2	282775	broad.mit.edu	37	chr11	55944406	55944406	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtacagcatttgtgtttcGgagtgttcatcaccacagaa	10	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944406	A	A	55944406	3	1	145	1	0	0	0	0	1	0	0	0	11259	1117	39	4	315	4	OR5J2	11	55944406	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	287833	55944406	79062110	1033	125734											
OR8J1	219477	broad.mit.edu	37	chr11	56128329	56128329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagttgtctttatatctGcagcaacaaatgtggttggt	9	6	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56128329	T	T	56128329	3	4	145	1	0	0	0	0	1	0	0	0	11335	1319	46	3	609	3	OR8J1	11	56128329	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	183923	56128329	78878187	1034	125735											
OR5R1	219479	broad.mit.edu	37	chr11	56185520	56185520	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaacaaaggccaggtggctGaggaaatagtacataggtgt	13	6	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56185520	A	A	56185520	2	1	145	1	0	0	0	0	0	0	0	1	11274	1277	45	4		4	OR5R1	11	56185520	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	57191	56185520	78820996	1035	125736											
OR5M8	219484	broad.mit.edu	37	chr11	56258247	56258247	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggttccagccagccacAataaacattgacaactcctt	6	12	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56258247	T	T	56258247	2	4	145	1	0	0	0	0	0	0	0	1	11270	126	5	5		5	OR5M8	11	56258247	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	72727	56258247	78748269	1036	125737											
OR5B2	390190	broad.mit.edu	37	chr11	58190721	58190721	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgaactttgtcacttccGtacaattctccatcagtatt	5	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58190721	A	A	58190721	3	1	145	1	0	0	0	0	1	0	0	0	11244	1145	40	4	919	4	OR5B2	11	58190721	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1932474	58190721	76815795	1037	125738											
GLYATL1	92292	broad.mit.edu	37	chr11	58714572	58714572	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccacagaatgatcctactGaataactcccataagctgct	5	13	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58714572	A	A	58714572	2	1	145	1	0	0	0	0	0	0	0	1	6544	1305	45	4		4	GLYATL1	11	58714572	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	523851	58714572	76291944	1038	125739											
OR4D6	219983	broad.mit.edu	37	chr11	59224981	59224981	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctactgttatgtgctccAggtggtaaaactggcctgca	10	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59224981	T	T	59224981	3	4	145	1	0	0	0	0	1	0	0	0	11152	188	7	5	550	5	OR4D6	11	59224981	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	510409	59224981	75781535	1039	125740											
MRPL16	54948	broad.mit.edu	37	chr11	59573990	59573990	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgatcttttcgcatcttctCtagagtcccgcggctcacag	8	13	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59573990	G	G	59573990	3	3	145	1	0	0	0	0	1	0	0	0	9875	922	32	4	173	4	MRPL16	11	59573990	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	349009	59573990	75432526	1040	125741											
C11orf66	220004	broad.mit.edu	37	chr11	61254429	61254429	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgccctgcaggtgccccctCcctgcccagaacccagcagc	10	20	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61254429	T	T	61254429	3	4	145	1	0	0	0	0	1	0	0	0	1668	855	30	4	878	4	C11orf66	11	61254429	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1680439	61254429	73752087	1041	125742											
DAGLA	747	broad.mit.edu	37	chr11	61490344	61490344	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgcagccatcctggtgatCgagttcatctacgccatcgt	9	13	2	1	rs150315991		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61490344	T	T	61490344	2	4	145	1	0	0	0	0	0	0	0	1	4259	874	31	4		4	DAGLA	11	61490344	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	235915	61490344	73516172	1042	125743											
MTA2	9219	broad.mit.edu	37	chr11	62364067	62364067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtcctggttccctcacCtgtcatctctcccacttctc	5	19	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62364067	A	A	62364067	1	1	145	0	1	0	0	0	0	0	0	0	10003	696	24	2		2	MTA2	11	62364067	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	873723	62364067	72642449	1043	125744											
UBXN1	51035	broad.mit.edu	37	chr11	62444113	62444113	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcagaaggcacgagtccTgaagatggaagaaaacaggc	13	8	0	4	rs112293944		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62444113	C	C	62444113	1	2	145	0	1	0	0	0	0	0	0	0	17037	1595	55	5		5	UBXN1	11	62444113	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	80046	62444113	72562403	1044	125745											
SLC3A2	6520	broad.mit.edu	37	chr11	62656092	62656092	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaggccgtgaggagggctCccctcttgagctggaacgcc	15	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62656092	T	T	62656092	3	4	145	1	0	0	0	0	1	0	0	0	14741	855	30	4	1966	4	SLC3A2	11	62656092	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	211979	62656092	72350424	1045	125746											
SLC22A8	9376	broad.mit.edu	37	chr11	62762206	62762206	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacccatagccaaactatAgtaggcaaaaccggtagcaa	7	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62762206	G	G	62762206	3	3	145	1	0	0	0	0	1	0	0	0	14574	420	15	5	620	5	SLC22A8	11	62762206	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	106114	62762206	72244310	1046	125747											
SLC22A10	387775	broad.mit.edu	37	chr11	63067051	63067051	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaactactgtgtgtgacttGttccgcaaccccagtatgcg	9	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63067051	A	A	63067051	2	1	145	1	0	0	0	0	0	0	0	1	14554	1368	48	4		4	SLC22A10	11	63067051	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	304845	63067051	71939465	1047	125748											
HRASLS5	117245	broad.mit.edu	37	chr11	63233728	63233728	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagggcaggtacgtcccatCtagcttgttattgaccttcc	9	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63233728	A	A	63233728	3	1	145	1	0	0	0	0	1	0	0	0	7418	913	32	3	246	3	HRASLS5	11	63233728	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	166677	63233728	71772788	1048	125749											
STIP1	10963	broad.mit.edu	37	chr11	63967652	63967652	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccccaggggactatcccCaggccatgaagcattataca	8	14	0	1	rs34986887		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63967652	T	T	63967652	4	4	145	1	0	0	0	0	0	1	0	0	15403	595	21	4	1170	4	STIP1	11	63967652	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	733924	63967652	71038864	1049	125750											
PLCB3	5331	broad.mit.edu	37	chr11	64022322	64022322	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgggagtgaagaccacagcGaggctgtgcgggagccccct	16	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64022322	A	A	64022322	1	1	145	0	1	0	0	0	0	0	0	0	12124	1073	37	4		4	PLCB3	11	64022322	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	54670	64022322	70984194	1050	125751											
NRXN2	9379	broad.mit.edu	37	chr11	64435166	64435166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttatagaccacctgcaGggaggggtggggtcagggat	17	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64435166	T	T	64435166	1	4	145	0	1	0	0	0	0	0	0	0	10761	1015	35	2		2	NRXN2	11	64435166	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	412844	64435166	70571350	1051	125752											
ZFPL1	7542	broad.mit.edu	37	chr11	64854853	64854853	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctccatggagactgtgacGatgacaagtaccgacgtcgg	13	11	0	3	rs139876978		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64854853	A	A	64854853	3	1	145	1	0	0	0	0	1	0	0	0	17782	1058	37	4	716	4	ZFPL1	11	64854853	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	419687	64854853	70151663	1052	125753											
C11orf2	738	broad.mit.edu	37	chr11	64877944	64877944	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccttgcagtacctctttTtaccaccaggtggggctcct	8	15	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64877944	G	G	64877944	1	3	145	0	1	0	0	0	0	0	0	0	1644	1856	64	5		5	C11orf2	11	64877944	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	23091	64877944	70128572	1053	125754											
TIGD3	220359	broad.mit.edu	37	chr11	65124211	65124211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggcccattaccgacaccGgctgttgggcaaactggctg	12	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65124211	T	T	65124211	3	4	145	1	0	0	0	0	1	0	0	0	16020	1116	39	1	934	1	TIGD3	11	65124211	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	246267	65124211	69882305	1054	125755											
MAP3K11	4296	broad.mit.edu	37	chr11	65373321	65373321	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcgtccatgcgggaccttCtcctggtgatgggagggcaa	14	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65373321	T	T	65373321	3	4	145	1	0	0	0	0	1	0	0	0	9337	913	32	4	813	4	MAP3K11	11	65373321	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	249110	65373321	69633195	1055	125756											
SF3B2	10992	broad.mit.edu	37	chr11	65819837	65819837	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcttccgggttggtcgcGcgccttcctgcggctaagat	13	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65819837	T	T	65819837	1	4	145	0	1	0	0	0	0	0	0	0	14264	1102	38	3		3	SF3B2	11	65819837	5'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	446516	65819837	69186679	1056	125757											
SPTBN2	6712	broad.mit.edu	37	chr11	66458681	66458681	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctgagctctaccctagctCctgggaactctccccggcat	8	16	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66458681	T	T	66458681	1	4	145	0	1	0	0	0	0	0	0	0	15238	870	30	4		4	SPTBN2	11	66458681	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	638844	66458681	68547835	1057	125758											
TBC1D10C	374403	broad.mit.edu	37	chr11	67172997	67172997	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagggagtgggcaggggCcccaattcccctacccagag	16	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67172997	T	T	67172997	1	4	145	0	1	0	0	0	0	0	0	0	15719	754	26	4		4	TBC1D10C	11	67172997	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	714316	67172997	67833519	1058	125759											
NADSYN1	55191	broad.mit.edu	37	chr11	71209592	71209592	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtaaatccagcagaaatGtttctctctccatgtttcat	6	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71209592	A	A	71209592	1	1	145	0	1	0	0	0	0	0	0	0	10232	1392	48	4		4	NADSYN1	11	71209592	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4036595	71209592	63796924	1059	125760											
KRTAP5-11	440051	broad.mit.edu	37	chr11	71293997	71293997	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccagaggtcagggaggacGcagggtcctttccttgtgac	15	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71293997	A	A	71293997	1	1	145	0	1	0	0	0	0	0	0	0	8632	1102	38	4		4	KRTAP5-11	11	71293997	5'Flank	SNP	G	TCGA-49-6743-01A-11D-1855-08	84405	71293997	63712519	1060	125761											
ARAP1	116985	broad.mit.edu	37	chr11	72397194	72397194	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggacctcaggcactgcccGggacacgcgtgagggctctg	15	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72397194	A	A	72397194	3	1	145	1	0	0	0	0	1	0	0	0	840	1115	39	4	132	4	ARAP1	11	72397194	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1103197	72397194	62609322	1061	125762											
SLCO2B1	11309	broad.mit.edu	37	chr11	74915580	74915580	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgccgtagagcagcaattGctagtgtcggggccagggaa	15	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74915580	C	C	74915580	3	2	145	1	0	0	0	0	1	0	0	0	14841	1310	46	4	2139	4	SLCO2B1	11	74915580	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2518386	74915580	60090936	1062	125763											
PRKRIR	5612	broad.mit.edu	37	chr11	76062273	76062273	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattctccaacaatgaagctCagctgacagcgtgtcaggat	10	10	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76062273	T	T	76062273	3	4	145	1	0	0	0	0	1	0	0	0	12632	835	29	4	368	4	PRKRIR	11	76062273	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1146693	76062273	58944243	1063	125764											
MYO7A	4647	broad.mit.edu	37	chr11	76872197	76872197	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctcatgggaatttccttCcccaatatggaaataagaaa	7	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76872197	T	T	76872197	1	4	145	0	1	0	0	0	0	0	0	0	10176	870	30	4		4	MYO7A	11	76872197	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	809924	76872197	58134319	1064	125765											
CCDC83	220047	broad.mit.edu	37	chr11	85630436	85630436	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgaagcttatgagtgtGgagagcaagaaaatgcccat	14	5	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85630436	A	A	85630436	2	1	145	1	0	0	0	0	0	0	0	1	2885	1335	47	4		4	CCDC83	11	85630436	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	8758239	85630436	49376080	1065	125766											
CCDC81	60494	broad.mit.edu	37	chr11	86126096	86126096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcataaagcttattccctgGtagaatgataacctgcatta	7	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86126096	T	T	86126096	1	4	145	0	1	0	0	0	0	0	0	0	2883	1276	44	3		3	CCDC81	11	86126096	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	495660	86126096	48880420	1066	125767											
PRSS23	11098	broad.mit.edu	37	chr11	86518646	86518646	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgttcagcccttgccctcCtgacctgcttgtctttgttt	7	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86518646	T	T	86518646	1	4	145	0	1	0	0	0	0	0	0	0	12726	696	24	4		4	PRSS23	11	86518646	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	392550	86518646	48487870	1067	125768											
NOX4	50507	broad.mit.edu	37	chr11	89073112	89073112	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttatttctttccttgctActtatctgcataatttctat	3	9	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89073112	T	T	89073112	1	4	145	0	1	0	0	0	0	0	0	0	10653	406	14	5		5	NOX4	11	89073112	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2554466	89073112	45933404	1068	125769											
NOX4	50507	broad.mit.edu	37	chr11	89075295	89075295	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actccaatgcctccagccacGcagaggctgacctcatagtt	8	15	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89075295	C	C	89075295	3	2	145	1	0	0	0	0	1	0	0	0	10653	1079	38	4	472	4	NOX4	11	89075295	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2183	89075295	45931221	1069	125770											
NOX4	50507	broad.mit.edu	37	chr11	89185034	89185034	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttgaggttaagaacagaTgctgaggctctgcttagaca	12	7	1	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89185034	A	A	89185034	2	1	145	1	0	0	0	0	0	0	0	1	10653	1451	51	5		5	NOX4	11	89185034	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	109739	89185034	45821482	1070	125771											
FOLH1B	219595	broad.mit.edu	37	chr11	89424083	89424083	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagcggctatccactgtatCacagtgtctatgaaacatat	7	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89424083	T	T	89424083	3	4	145	1	0	0	0	0	1	0	0	0	6038	826	29	4	767	4	FOLH1B	11	89424083	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	239049	89424083	45582433	1071	125772											
FOLH1B	219595	broad.mit.edu	37	chr11	89424576	89424576	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaatgccattagaaattaTgttctttaagcatttgatga	7	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89424576	A	A	89424576	1	1	145	0	1	0	0	0	0	0	0	0	6038	1479	51	5		5	FOLH1B	11	89424576	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	493	89424576	45581940	1072	125773											
UBTFL1	642623	broad.mit.edu	37	chr11	89819464	89819464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcaaggagagttggcCccagtactcccaaatgtacc	8	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89819464	A	A	89819464	3	1	145	1	0	0	0	0	1	0	0	0	17036	623	22	2	349	2	UBTFL1	11	89819464	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	394888	89819464	45187052	1073	125774											
FAT3	120114	broad.mit.edu	37	chr11	92086967	92086967	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccatgaaagtgaggtcaaTgtgactattcgaataggaaa	11	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92086967	C	C	92086967	2	2	145	1	0	0	0	0	0	0	0	1	5748	1461	51	5		5	FAT3	11	92086967	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	2267503	92086967	42919549	1074	125775											
FAT3	120114	broad.mit.edu	37	chr11	92531738	92531738	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccattttcatgtgcatgtGagagacagtggtagccccca	10	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531738	A	A	92531738	2	1	145	1	0	0	0	0	0	0	0	1	5748	1277	45	4		4	FAT3	11	92531738	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	444771	92531738	42474778	1075	125776											
MTMR2	8898	broad.mit.edu	37	chr11	95569395	95569395	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggctactggataaaggaCatgattggaatagctcccat	11	8	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95569395	T	T	95569395	3	4	145	1	0	0	0	0	1	0	0	0	10038	478	17	4	252	4	MTMR2	11	95569395	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3037657	95569395	39437121	1076	125777											
CNTN5	53942	broad.mit.edu	37	chr11	100095501	100095501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggctgcagggtacagacCacagcagacagtgtgtcaga	13	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100095501	A	A	100095501	2	1	145	1	0	0	0	0	0	0	0	1	3676	581	21	2		2	CNTN5	11	100095501	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	4526106	100095501	34911015	1077	125778											
MMP1	4312	broad.mit.edu	37	chr11	102667956	102667956	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccactgtcatgggaaataGctctctcactctggccctca	7	14	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102667956	A	A	102667956	1	1	145	0	1	0	0	0	0	0	0	0	9741	986	34	4		4	MMP1	11	102667956	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2572455	102667956	32338560	1078	125779											
DYNC2H1	79659	broad.mit.edu	37	chr11	103194650	103194650	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgagaaaattccagaggacGacaaacctagtttctttggt	9	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103194650	T	T	103194650	3	4	145	1	0	0	0	0	1	0	0	0	4886	1058	37	3	12322	3	DYNC2H1	11	103194650	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	526694	103194650	31811866	1079	125780											
AASDHPPT	60496	broad.mit.edu	37	chr11	105948550	105948550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaatggctgctggcagtgcGatcgattcagcccgaggaga	15	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105948550	T	T	105948550	3	4	145	1	0	0	0	0	1	0	0	0	23	1058	37	3	115	3	AASDHPPT	11	105948550	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2753900	105948550	29057966	1080	125781											
GUCY1A2	2977	broad.mit.edu	37	chr11	106617425	106617425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacaaaaataaaaaatcaGtactgtgacattttttattt	6	4	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106617425	T	T	106617425	1	4	145	0	1	0	0	0	0	0	0	0	6958	1044	36	3		3	GUCY1A2	11	106617425	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	668875	106617425	28389091	1081	125782											
CWF19L2	143884	broad.mit.edu	37	chr11	107299756	107299756	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttctaaaaccactacacAaagagccctgagctaccaat	5	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107299756	G	G	107299756	3	3	145	1	0	0	0	0	1	0	0	0	4105	131	5	5	1526	5	CWF19L2	11	107299756	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	682331	107299756	27706760	1082	125783											
ATM	472	broad.mit.edu	37	chr11	108142174	108142174	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctatttttcttttgctAtctgtggatacgaatgcaag	9	7	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108142174	G	G	108142174	1	3	145	0	1	0	0	0	0	0	0	0	1113	464	16	5		5	ATM	11	108142174	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	842418	108142174	26864342	1083	125784											
DDX10	1662	broad.mit.edu	37	chr11	108549087	108549087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacaacataaatatactcGtgtgcacaccaggtcggctt	7	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108549087	T	T	108549087	3	4	145	1	0	0	0	0	1	0	0	0	4375	1145	40	3	601	3	DDX10	11	108549087	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	406913	108549087	26457429	1084	125785											
ZC3H12C	85463	broad.mit.edu	37	chr11	110035917	110035917	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttccatcacaagcctcctCttccgcacctggctctgcac	6	18	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110035917	T	T	110035917	3	4	145	1	0	0	0	0	1	0	0	0	17689	913	32	4	2129	4	ZC3H12C	11	110035917	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1486830	110035917	24970599	1085	125786											
NCAM1	4684	broad.mit.edu	37	chr11	113105857	113105857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctgggtgagatcagcgCggcctccgagttcaagacgc	16	11	2	2	rs117485712	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113105857	A	A	113105857	3	1	145	1	0	0	0	0	1	0	0	0	10297	768	27	3	1851	3	NCAM1	11	113105857	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3069940	113105857	21900659	1086	125787											
FAM55B	120406	broad.mit.edu	37	chr11	114569307	114569307	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtttgccaacagaagcTccaatgtcttcactgaatgt	8	11	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114569307	A	A	114569307	3	1	145	1	0	0	0	0	1	0	0	0	5636	1551	54	5	683	5	FAM55B	11	114569307	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1463450	114569307	20437209	1087	125788											
BUD13	84811	broad.mit.edu	37	chr11	116633961	116633961	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtgacgaaaatgtctgtttGagggtaggtcttcgttgtgg	15	5	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116633961	C	C	116633961	4	2	145	1	0	0	0	0	0	1	0	0	1583	1294	45	4	1543	4	BUD13	11	116633961	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2064654	116633961	18372555	1088	125789											
APOC3	345	broad.mit.edu	37	chr11	116701407	116701407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggcaacttggggatcCcagtcccaatgggtggtcaa	15	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116701407	A	A	116701407	1	1	145	0	1	0	0	0	0	0	0	0	801	638	22	2		2	APOC3	11	116701407	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	67446	116701407	18305109	1089	125790											
CEP164	22897	broad.mit.edu	37	chr11	117242006	117242006	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaacctaagatttgcaggAatctggtgacccccaaggca	11	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117242006	T	T	117242006	3	4	145	1	0	0	0	0	1	0	0	0	3279	246	9	5	1002	5	CEP164	11	117242006	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	540599	117242006	17764510	1090	125791											
MFRP	83552	broad.mit.edu	37	chr11	119217211	119217211	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgcagaggatgacatctgAgaagtccttcatggcacaag	11	9	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119217211	G	G	119217211	3	3	145	1	0	0	0	0	1	0	0	0	9619	304	11	5	1778	5	MFRP	11	119217211	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1975205	119217211	15789305	1091	125792											
GRAMD1B	57476	broad.mit.edu	37	chr11	123489025	123489025	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttctaacctctgcctcctCcccatttttcttccttgctc	3	17	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123489025	T	T	123489025	1	4	145	0	1	0	0	0	0	0	0	0	6814	870	30	4		4	GRAMD1B	11	123489025	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4271814	123489025	11517491	1092	125793											
OR8B12	219858	broad.mit.edu	37	chr11	124412648	124412648	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttttctgcccaaagttctCctcagggcaactttgacatc	6	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124412648	T	T	124412648	2	4	145	1	0	0	0	0	0	0	0	1	11320	854	30	4		4	OR8B12	11	124412648	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	923623	124412648	10593868	1093	125794											
PATE2	399967	broad.mit.edu	37	chr11	125647478	125647478	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccttttactgcgttcctagGagtaatctgtttttgtgtcc	8	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125647478	A	A	125647478	1	1	145	0	1	0	0	0	0	0	0	0	11568	1189	41	4		4	PATE2	11	125647478	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1234830	125647478	9359038	1094	125795											
CDON	50937	broad.mit.edu	37	chr11	125848198	125848198	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagacacattattaacataCctattgttgtttcgacaatt	5	8	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125848198	A	A	125848198	5	1	145	1	0	0	0	0	0	0	1	0	3200	521	18	3	449	3	CDON	11	125848198	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	200720	125848198	9158318	1095	125796											
CDON	50937	broad.mit.edu	37	chr11	125875589	125875589	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctacaaatgaaaaggcaacAgtatatgttatacaaagaac	6	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125875589	G	G	125875589	1	3	145	0	1	0	0	0	0	0	0	0	3200	203	7	5		5	CDON	11	125875589	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	27391	125875589	9130927	1096	125797											
CDON	50937	broad.mit.edu	37	chr11	125893185	125893185	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttggtcaaaccaatcttaGaaacatctttagatagcacc	6	9	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125893185	C	C	125893185	1	2	145	0	1	0	0	0	0	0	0	0	3200	957	33	4		4	CDON	11	125893185	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	17596	125893185	9113331	1097	125798											
FOXRED1	55572	broad.mit.edu	37	chr11	126146969	126146969	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccacctctcactccagcagGaagaaccggacccggcgaac	9	18	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126146969	A	A	126146969	3	1	145	1	0	0	0	0	1	0	0	0	6093	1175	41	4	1143	4	FOXRED1	11	126146969	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	253784	126146969	8859547	1098	125799											
ETS1	2113	broad.mit.edu	37	chr11	128426046	128426046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaatttatggagaaggcCcgggactttccattcaagaa	9	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128426046	A	A	128426046	1	1	145	0	1	0	0	0	0	0	0	0	5317	638	22	2		2	ETS1	11	128426046	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2279077	128426046	6580470	1099	125800											
KCNJ1	3758	broad.mit.edu	37	chr11	128709648	128709648	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggcacgttttttgggcctgGagatcttggctaagatggcc	14	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128709648	C	C	128709648	3	2	145	1	0	0	0	0	1	0	0	0	8113	1174	41	4	631	4	KCNJ1	11	128709648	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	283602	128709648	6296868	1100	125801											
ADAMTS8	11095	broad.mit.edu	37	chr11	130288909	130288909	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgatctgcccatcctgtCtcccttcctccccagggctt	6	18	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130288909	T	T	130288909	1	4	145	0	1	0	0	0	0	0	0	0	272	928	32	4		4	ADAMTS8	11	130288909	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1579261	130288909	4717607	1101	125802											
OPCML	4978	broad.mit.edu	37	chr11	132305962	132305962	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgagcccactgcatcCaggcttccagcactcaccat	9	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132305962	G	G	132305962	1	3	145	0	1	0	0	0	0	0	0	0	10968	609	21	4		4	OPCML	11	132305962	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2017053	132305962	2700554	1102	125803											
LRTM2	654429	broad.mit.edu	37	chr12	1943850	1943850	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgggggaccccgagggcgAgcacgaggaccagaagcaga	18	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1943850	T	T	1943850	3	4	145	1	0	0	0	0	1	0	0	0	9132	304	11	5	1086	5	LRTM2	12	1943850	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08		1943850	131908045	1103	125804											
NRIP2	83714	broad.mit.edu	37	chr12	2937708	2937708	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaatgaactgtctttaaAactggcttttatcggggcca	9	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2937708	T	T	2937708	1	4	145	0	1	0	0	0	0	0	0	0	10748	29	1	5		5	NRIP2	12	2937708	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	993858	2937708	130914187	1104	125805											
PEX5	5830	broad.mit.edu	37	chr12	7343064	7343064	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacccaggacaaggcccttCggcaggagggattgaggcct	14	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7343064	A	A	7343064	2	1	145	1	0	0	0	0	0	0	0	1	11843	875	31	3		3	PEX5	12	7343064	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	4405356	7343064	126508831	1105	125806											
PEX5	5830	broad.mit.edu	37	chr12	7343349	7343349	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagcgtttataaacactaGaaaaccctgtgcacctttaa	6	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7343349	C	C	7343349	1	2	145	0	1	0	0	0	0	0	0	0	11843	957	33	4		4	PEX5	12	7343349	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	285	7343349	126508546	1106	125807											
CD163L1	283316	broad.mit.edu	37	chr12	7522232	7522232	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccactctcccagagcactCggtgtctcctccacgcactc	6	20	2	1	rs138733121	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7522232	A	A	7522232	4	1	145	1	0	0	0	0	0	1	0	0	2998	893	31	3	621	3	CD163L1	12	7522232	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	178883	7522232	126329663	1107	125808											
CLEC9A	283420	broad.mit.edu	37	chr12	10217378	10217378	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaaggaagctatgattaCtgggtggggttgtctcagga	14	4	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10217378	A	A	10217378	4	1	145	1	0	0	0	0	0	1	0	0	3554	576	20	3	537	3	CLEC9A	12	10217378	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2695146	10217378	123634517	1108	125809											
CLEC1A	51267	broad.mit.edu	37	chr12	10223795	10223795	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgctggtgatcctgaaCaggaaacacgagaacccatt	10	9	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10223795	A	A	10223795	1	1	145	0	1	0	0	0	0	0	0	0	3537	493	17	3		3	CLEC1A	12	10223795	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	6417	10223795	123628100	1109	125810											
OLR1	4973	broad.mit.edu	37	chr12	10312526	10312526	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgacatatactgaaggcagCtaaaatgcagttttccgcat	8	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10312526	G	G	10312526	3	3	145	1	0	0	0	0	1	0	0	0	10957	797	28	4	50	4	OLR1	12	10312526	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	88731	10312526	123539369	1110	125811											
KLRC1	3821	broad.mit.edu	37	chr12	10603114	10603114	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actatcgttaccacagaggcCattaagataagacagataat	7	8	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10603114	T	T	10603114	3	4	145	1	0	0	0	0	1	0	0	0	8486	594	21	4	469	4	KLRC1	12	10603114	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	290588	10603114	123248781	1111	125812											
LDHB	3945	broad.mit.edu	37	chr12	21788509	21788509	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtccttctggatgtcccaCagggtatctgcacttttctt	9	11	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21788509	T	T	21788509	2	4	145	1	0	0	0	0	0	0	0	1	8773	465	17	4		4	LDHB	12	21788509	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	11185395	21788509	112063386	1112	125813											
ABCC9	10060	broad.mit.edu	37	chr12	22063216	22063216	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggataagttagacgtagAgagcctaaggattttattat	10	4	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22063216	G	G	22063216	3	3	145	1	0	0	0	0	1	0	0	0	59	304	11	5	3720	5	ABCC9	12	22063216	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	274707	22063216	111788679	1113	125814											
LRMP	4033	broad.mit.edu	37	chr12	25260973	25260973	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatttaccagactccgacaCaatgggccaccaccagtgtg	8	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25260973	G	G	25260973	3	3	145	1	0	0	0	0	1	0	0	0	9037	477	17	4	1545	4	LRMP	12	25260973	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3197757	25260973	108590922	1114	125815											
TM7SF3	51768	broad.mit.edu	37	chr12	27143248	27143248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgttttgtttactgctaTgtcccagtgcctagaacaga	9	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27143248	C	C	27143248	1	2	145	0	1	0	0	0	0	0	0	0	16098	1479	51	5		5	TM7SF3	12	27143248	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1882275	27143248	106708647	1115	125816											
IPO8	10526	broad.mit.edu	37	chr12	30784891	30784891	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgctgtcctctgatccTcgctgagtggtgccatcagc	12	13	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30784891	A	A	30784891	3	1	145	1	0	0	0	0	1	0	0	0	7868	1551	54	5	167	5	IPO8	12	30784891	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	3641643	30784891	103067004	1116	125817											
KIF21A	55605	broad.mit.edu	37	chr12	39696650	39696650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattctttaagaaaaaggcCtgattaatattatctgtaaa	5	5	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39696650	A	A	39696650	1	1	145	0	1	0	0	0	0	0	0	0	8358	696	24	2		2	KIF21A	12	39696650	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	8911759	39696650	94155245	1117	125818											
CNTN1	1272	broad.mit.edu	37	chr12	41323864	41323864	+	Intron	DEL	C	-	-													atctacatatggtatacttaCcgtaatgaaaagaaatatcc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41323864	-	-	41323864	6	5	145	0	1	1	0	1	0	0	0	0	3672	522	18	0		0	CNTN1	12	41323864	Intron	DEL	C	TCGA-49-6743-01A-11D-1855-08	1627214	41323864	92528031	1118	125819											
PPHLN1	51535	broad.mit.edu	37	chr12	42681224	42681224	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccctcagcgagcccagcGtggggaccactcttcctggg	13	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42681224	T	T	42681224	1	4	145	0	1	0	0	0	0	0	0	0	12411	1160	40	3		3	PPHLN1	12	42681224	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1357360	42681224	91170671	1119	125820											
SLC38A1	81539	broad.mit.edu	37	chr12	46633331	46633331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgggtttcaccatgttGgtcaggctggtctcgaattc	13	8	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46633331	T	T	46633331	1	4	145	0	1	0	0	0	0	0	0	0	14715	1363	47	2		2	SLC38A1	12	46633331	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3952107	46633331	87218564	1120	125821											
LALBA	3906	broad.mit.edu	37	chr12	48962264	48962264	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctaatggggtaaggagaagGaggatggggaaatagaaaat	17	1	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48962264	T	T	48962264	1	4	145	0	1	0	0	0	0	0	0	0	8676	1189	41	3		3	LALBA	12	48962264	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2328933	48962264	84889631	1121	125822											
ADCY6	112	broad.mit.edu	37	chr12	49166402	49166402	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcacatggaaggggagacaaGagactgcatttactgagcac	13	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49166402	C	C	49166402	1	2	145	0	1	0	0	0	0	0	0	0	298	957	33	4		4	ADCY6	12	49166402	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	204138	49166402	84685493	1122	125823											
PRPF40B	25766	broad.mit.edu	37	chr12	50025752	50025752	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaggctctgccctgcagtCccgtgagtctgacttggaat	12	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50025752	T	T	50025752	1	4	145	0	1	0	0	0	0	0	0	0	12678	870	30	4		4	PRPF40B	12	50025752	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	859350	50025752	83826143	1123	125824											
FMNL3	91010	broad.mit.edu	37	chr12	50047382	50047382	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaggcctgagtatgctcttGagagccctggtgggttctaa	13	9	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50047382	A	A	50047382	1	1	145	0	1	0	0	0	0	0	0	0	6011	1305	45	4		4	FMNL3	12	50047382	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	21630	50047382	83804513	1124	125825											
TMPRSS12	283471	broad.mit.edu	37	chr12	51252604	51252604	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagctgtgattggaactaaTaatatacatggacgctatcc	8	8	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51252604	C	C	51252604	2	2	145	1	0	0	0	0	0	0	0	1	16367	1403	49	5		5	TMPRSS12	12	51252604	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	1205222	51252604	82599291	1125	125826											
TMPRSS12	283471	broad.mit.edu	37	chr12	51281193	51281193	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaccaaaagtggctgacagAgcatttcttccatgcaagca	8	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51281193	G	G	51281193	3	3	145	1	0	0	0	0	1	0	0	0	16367	304	11	5	962	5	TMPRSS12	12	51281193	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	28589	51281193	82570702	1126	125827											
GALNT6	11226	broad.mit.edu	37	chr12	51753051	51753051	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggtgtgggggctcttGgtccggaacacatggcctac	17	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51753051	T	T	51753051	2	4	145	1	0	0	0	0	0	0	0	1	6279	1335	47	2		2	GALNT6	12	51753051	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	471858	51753051	82098844	1127	125828											
SLC4A8	9498	broad.mit.edu	37	chr12	51883654	51883654	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaacagcccaagttcctGggcatccgagaacagagagt	13	10	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51883654	T	T	51883654	2	4	145	1	0	0	0	0	0	0	0	1	14773	1335	47	2		2	SLC4A8	12	51883654	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	130603	51883654	81968241	1128	125829											
ANKRD33	341405	broad.mit.edu	37	chr12	52282935	52282935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccttgatgtgaaccagCaggacaaaggaggggacacg	13	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52282935	A	A	52282935	3	1	145	1	0	0	0	0	1	0	0	0	661	711	25	3	491	3	ANKRD33	12	52282935	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	399281	52282935	81568960	1129	125830											
KRT84	3890	broad.mit.edu	37	chr12	52778742	52778742	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagtccccagaaccgggcCagttctttttaagggaaaga	10	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52778742	T	T	52778742	1	4	145	0	1	0	0	0	0	0	0	0	8569	609	21	4		4	KRT84	12	52778742	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	495807	52778742	81073153	1130	125831											
KRT6C	286887	broad.mit.edu	37	chr12	52865406	52865406	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggagcgaggacacagagCcacttctctccttctaaatg	11	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52865406	G	G	52865406	1	3	145	0	1	0	0	0	0	0	0	0	8553	754	26	4		4	KRT6C	12	52865406	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	86664	52865406	80986489	1131	125832											
KRT2	3849	broad.mit.edu	37	chr12	53040623	53040623	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagtcacgcagcagccgcGccaagtcctccttggcctgc	12	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53040623	A	A	53040623	3	1	145	1	0	0	0	0	1	0	0	0	8528	1087	38	4	561	4	KRT2	12	53040623	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	175217	53040623	80811272	1132	125833											
ITGA5	3678	broad.mit.edu	37	chr12	54798072	54798072	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaatagaattaggactcctCtgtaacctggacacaggaaa	8	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54798072	T	T	54798072	1	4	145	0	1	0	0	0	0	0	0	0	7949	928	32	4		4	ITGA5	12	54798072	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1757449	54798072	79053823	1133	125834											
OR10A7	121364	broad.mit.edu	37	chr12	55615073	55615073	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtagatctagtgtccccaAggaaaattatctcttttgtg	8	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55615073	T	T	55615073	3	4	145	1	0	0	0	0	1	0	0	0	10989	63	3	5	267	5	OR10A7	12	55615073	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	817001	55615073	78236822	1134	125835											
ITGA7	3679	broad.mit.edu	37	chr12	56088203	56088203	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatgactacccccacctcaCccttccggccccgcctggct	6	21	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56088203	G	G	56088203	1	3	145	0	1	0	0	0	0	0	0	0	7951	522	18	4		4	ITGA7	12	56088203	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	473130	56088203	77763692	1135	125836											
SMARCC2	6601	broad.mit.edu	37	chr12	56574664	56574664	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagatcctgtagactgGgaggtggacctgagaaatca	14	6	1	3	rs148079823	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56574664	C	C	56574664	1	2	145	0	1	0	0	0	0	0	0	0	14890	1247	43	4		4	SMARCC2	12	56574664	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	486461	56574664	77277231	1136	125837											
CNPY2	10330	broad.mit.edu	37	chr12	56709035	56709035	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtcgctccacctgggtttGagtgggaataaaacataagt	13	7	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56709035	A	A	56709035	1	1	145	0	1	0	0	0	0	0	0	0	3660	1305	45	4		4	CNPY2	12	56709035	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	134371	56709035	77142860	1137	125838											
LRP1	4035	broad.mit.edu	37	chr12	57589573	57589573	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccgagtgtggtgagccttCggcggtggtgggaggaggcc	20	10	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57589573	T	T	57589573	1	4	145	0	1	0	0	0	0	0	0	0	9038	899	31	4		4	LRP1	12	57589573	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	880538	57589573	76262322	1138	125839											
DTX3	196403	broad.mit.edu	37	chr12	58000768	58000768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccggctggcccggcttcGggaggagcaccgtgtgtcca	16	14	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58000768	T	T	58000768	3	4	145	1	0	0	0	0	1	0	0	0	4835	1116	39	1	128	1	DTX3	12	58000768	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	411195	58000768	75851127	1139	125840											
PPM1H	57460	broad.mit.edu	37	chr12	63195545	63195545	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaaggacggacagacctGgcgcaggcgccagcctggcc	16	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63195545	A	A	63195545	1	1	145	0	1	0	0	0	0	0	0	0	12442	1363	47	4		4	PPM1H	12	63195545	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	5194777	63195545	70656350	1140	125841											
LEMD3	23592	broad.mit.edu	37	chr12	65639480	65639480	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcagtggcatttggcaattCaagaagcaattttagaaaaa	8	5	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65639480	T	T	65639480	4	4	145	1	0	0	0	0	0	1	0	0	8793	827	29	4	2461	4	LEMD3	12	65639480	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2443935	65639480	68212415	1141	125842											
HELB	92797	broad.mit.edu	37	chr12	66704131	66704131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgtgacagtcataagtGggaaaggtggatgtgggaag	16	4	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66704131	T	T	66704131	3	4	145	1	0	0	0	0	1	0	0	0	7112	1348	47	2	1437	2	HELB	12	66704131	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1064651	66704131	67147764	1142	125843											
BEST3	144453	broad.mit.edu	37	chr12	70049038	70049038	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgtctccttctctgaGggagacaggatggatcccat	14	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70049038	T	T	70049038	2	4	145	1	0	0	0	0	0	0	0	1	1411	987	35	2		2	BEST3	12	70049038	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	3344907	70049038	63802857	1143	125844											
CSRP2	1466	broad.mit.edu	37	chr12	77252846	77252846	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaggatagttagtgcaagtCcattaagctttgctagcact	10	7	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77252846	A	A	77252846	1	1	145	0	1	0	0	0	0	0	0	0	4001	870	30	3		3	CSRP2	12	77252846	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	7203808	77252846	56599049	1144	125845											
NAV3	89795	broad.mit.edu	37	chr12	78400535	78400535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgcagcctcccagttcagGacctagtgatggtgggaagg	14	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78400535	T	T	78400535	3	4	145	1	0	0	0	0	1	0	0	0	10279	1174	41	3	1247	3	NAV3	12	78400535	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1147689	78400535	55451360	1145	125846											
LRRIQ1	84125	broad.mit.edu	37	chr12	85517991	85517991	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagaagcccagaaaaatcAtttggcccctacaaacagtg	7	11	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85517991	T	T	85517991	3	4	145	1	0	0	0	0	1	0	0	0	9116	217	8	5	3763	5	LRRIQ1	12	85517991	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	7117456	85517991	48333904	1146	125847											
FGD6	55785	broad.mit.edu	37	chr12	95602831	95602831	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcatactccggtgcacaGaggcttgtaacagacttgta	9	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95602831	A	A	95602831	2	1	145	1	0	0	0	0	0	0	0	1	5894	929	33	4		4	FGD6	12	95602831	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	10084840	95602831	38249064	1147	125848											
C12orf63	374467	broad.mit.edu	37	chr12	97150345	97150345	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgatcaaaactcagggtaAaaagatattccattgttgta	7	5	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97150345	G	G	97150345	1	3	145	0	1	0	0	0	0	0	0	0	1719	29	1	5		5	C12orf63	12	97150345	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1547514	97150345	36701550	1148	125849											
ANKS1B	56899	broad.mit.edu	37	chr12	99640284	99640284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccacaaatccccctgcGttcataacccactggtcccc	4	20	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99640284	T	T	99640284	3	4	145	1	0	0	0	0	1	0	0	0	689	1136	40	3	1975	3	ANKS1B	12	99640284	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2489939	99640284	34211611	1149	125850											
ANO4	121601	broad.mit.edu	37	chr12	101504243	101504243	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctagcaccacttctggcCttactgaataacataattga	5	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101504243	A	A	101504243	2	1	145	1	0	0	0	0	0	0	0	1	699	668	24	2		2	ANO4	12	101504243	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1863959	101504243	32347652	1150	125851											
MYBPC1	4604	broad.mit.edu	37	chr12	102020717	102020717	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatttctacccttttccctgCttttaaatatattattcatt	1	9	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102020717	G	G	102020717	1	3	145	0	1	0	0	0	0	0	0	0	10105	812	28	4		4	MYBPC1	12	102020717	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	516474	102020717	31831178	1151	125852											
PAH	5053	broad.mit.edu	37	chr12	103260260	103260260	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgaacacatgcacacacaGaaggcaggactcttcatgct	8	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103260260	A	A	103260260	1	1	145	0	1	0	0	0	0	0	0	0	11488	957	33	4		4	PAH	12	103260260	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1239543	103260260	30591635	1152	125853											
STAB2	55576	broad.mit.edu	37	chr12	104089375	104089375	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctccttaccaaacctgctCatgcggctggaacagatgcc	10	14	1	1	rs143014449		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104089375	T	T	104089375	2	4	145	1	0	0	0	0	0	0	0	1	15356	813	29	4		4	STAB2	12	104089375	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	829115	104089375	29762520	1153	125854											
RFX4	5992	broad.mit.edu	37	chr12	107080806	107080806	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattcaccccggtccaaactCggaacactgctgccagaatt	7	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107080806	T	T	107080806	2	4	145	1	0	0	0	0	0	0	0	1	13373	871	31	4		4	RFX4	12	107080806	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	2991431	107080806	26771089	1154	125855											
WSCD2	9671	broad.mit.edu	37	chr12	108618685	108618685	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagggggagggaaccatgcAgcagagctgcaggaaccaca	15	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108618685	C	C	108618685	1	2	145	0	1	0	0	0	0	0	0	0	17534	203	7	5		5	WSCD2	12	108618685	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1537879	108618685	25233210	1155	125856											
UBE3B	89910	broad.mit.edu	37	chr12	109935654	109935654	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcacagttctcagacaatCtgattcggccgttcctcatc	7	14	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109935654	G	G	109935654	3	3	145	1	0	0	0	0	1	0	0	0	17006	912	32	4	775	4	UBE3B	12	109935654	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1316969	109935654	23916241	1156	125857											
GLTP	51228	broad.mit.edu	37	chr12	110295522	110295522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccccatagacatctggcCcgcacgctgggtgaaaagca	11	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110295522	A	A	110295522	1	1	145	0	1	0	0	0	0	0	0	0	6535	638	22	2		2	GLTP	12	110295522	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	359868	110295522	23556373	1157	125858											
OAS2	4939	broad.mit.edu	37	chr12	113440632	113440632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcccacgagcaggagGgcagttgggagaggcagggt	19	9	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113440632	T	T	113440632	1	4	145	0	1	0	0	0	0	0	0	0	10895	1247	43	2		2	OAS2	12	113440632	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3145110	113440632	20411263	1158	125859											
SLC24A6	80024	broad.mit.edu	37	chr12	113742146	113742146	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacttctgtgtggcttcGggagatctggagcaggcagc	14	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113742146	T	T	113742146	2	4	145	1	0	0	0	0	0	0	0	1	14584	1124	39	1		1	SLC24A6	12	113742146	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	301514	113742146	20109749	1159	125860											
TBX3	6926	broad.mit.edu	37	chr12	115117297	115117297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccattaaaaaggaaagcCccttgagtttaccttatcat	5	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115117297	A	A	115117297	1	1	145	0	1	0	0	0	0	0	0	0	15781	638	22	2		2	TBX3	12	115117297	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1375151	115117297	18734598	1160	125861											
KSR2	283455	broad.mit.edu	37	chr12	118198721	118198721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggaacgcaagtctgttcCcggtttccttgacctgggca	11	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118198721	T	T	118198721	1	4	145	0	1	0	0	0	0	0	0	0	8654	638	22	4		4	KSR2	12	118198721	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3081424	118198721	15653174	1161	125862											
TAOK3	51347	broad.mit.edu	37	chr12	118615075	118615075	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaaagttgtcaaatctttCttctgctgggccaagatctg	9	8	5	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118615075	G	G	118615075	3	3	145	1	0	0	0	0	1	0	0	0	15668	912	32	4	1094	4	TAOK3	12	118615075	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	416354	118615075	15236820	1162	125863											
HNF1A	6927	broad.mit.edu	37	chr12	121426785	121426785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatgaagacgcagaagcGggccgccctgtacacctggt	12	14	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121426785	T	T	121426785	3	4	145	1	0	0	0	0	1	0	0	0	7318	1116	39	1	482	1	HNF1A	12	121426785	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2811710	121426785	12425110	1163	125864											
HNF1A	6927	broad.mit.edu	37	chr12	121439028	121439028	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctggggcctgtactgcCtgcttggggggtgatgaggg	20	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121439028	A	A	121439028	1	1	145	0	1	0	0	0	0	0	0	0	7318	696	24	2		2	HNF1A	12	121439028	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	12243	121439028	12412867	1164	125865											
OASL	8638	broad.mit.edu	37	chr12	121465579	121465579	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttagaagttcaagagcataGagagggggcagattggctct	15	5	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121465579	C	C	121465579	2	2	145	1	0	0	0	0	0	0	0	1	10897	929	33	4		4	OASL	12	121465579	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	26551	121465579	12386316	1165	125866											
P2RX7	5027	broad.mit.edu	37	chr12	121600272	121600272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgaagggaaccagaagaCctgtgaagtctctgcctggt	13	8	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121600272	A	A	121600272	3	1	145	1	0	0	0	0	1	0	0	0	11439	507	18	3	500	3	P2RX7	12	121600272	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	134693	121600272	12251623	1166	125867											
BCL7A	605	broad.mit.edu	37	chr12	122492852	122492852	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtacctcgctcgaggtctcAgaggggcagccagatcggcc	15	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122492852	T	T	122492852	1	4	145	0	1	0	0	0	0	0	0	0	1383	188	7	5		5	BCL7A	12	122492852	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	892580	122492852	11359043	1167	125868											
KNTC1	9735	broad.mit.edu	37	chr12	123103061	123103061	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagtcctgatcagctgtcaGattgttctgagagtctcatc	9	9	4	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123103061	T	T	123103061	3	4	145	1	0	0	0	0	1	0	0	0	8499	942	33	3	6348	3	KNTC1	12	123103061	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	610209	123103061	10748834	1168	125869											
CCDC62	84660	broad.mit.edu	37	chr12	123265708	123265708	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattattgatgaacttccctCaggtgaactacataaaagaa	6	7	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123265708	G	G	123265708	1	3	145	0	1	0	0	0	0	0	0	0	2861	841	29	4		4	CCDC62	12	123265708	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	162647	123265708	10586187	1169	125870											
TCTN2	79867	broad.mit.edu	37	chr12	124179682	124179682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacactttgtatgacaaaatGcaattttaaggtaaacacta	5	6	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124179682	T	T	124179682	1	4	145	0	1	0	0	0	0	0	0	0	15845	1334	46	3		3	TCTN2	12	124179682	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	913974	124179682	9672213	1170	125871											
DNAH10	196385	broad.mit.edu	37	chr12	124359947	124359947	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatgaagttgacccaagatTtatttcgctattcagtgtct	7	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124359947	G	G	124359947	3	3	145	1	0	0	0	0	1	0	0	0	4638	1841	64	5	7936	5	DNAH10	12	124359947	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	180265	124359947	9491948	1171	125872											
GLT1D1	144423	broad.mit.edu	37	chr12	129383910	129383910	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaccgaaaggcagccttacTgagctgacagtgttcccatg	11	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129383910	C	C	129383910	1	2	145	0	1	0	0	0	0	0	0	0	6529	1595	55	5		5	GLT1D1	12	129383910	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	5023963	129383910	4467985	1172	125873											
GLT1D1	144423	broad.mit.edu	37	chr12	129429874	129429874	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctttgtctcttttcaggtcGatccagtgtttacaagggaa	9	8	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129429874	C	C	129429874	3	2	145	1	0	0	0	0	1	0	0	0	6529	1058	37	4	397	4	GLT1D1	12	129429874	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	45964	129429874	4422021	1173	125874											
GLT1D1	144423	broad.mit.edu	37	chr12	129467749	129467749	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaataaaaccagcctcagcGgaatcctagaaaatgttagt	7	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129467749	A	A	129467749	1	1	145	0	1	0	0	0	0	0	0	0	6529	1131	39	4		4	GLT1D1	12	129467749	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	37875	129467749	4384146	1174	125875											
RIMBP2	23504	broad.mit.edu	37	chr12	130898775	130898775	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccacaaagatccgggcCgggagctcttcggcaccagg	14	13	1	2	rs138726483	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130898775	T	T	130898775	2	4	145	1	0	0	0	0	0	0	0	1	13472	639	23	4		4	RIMBP2	12	130898775	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1431026	130898775	2953120	1175	125876											
MMP17	4326	broad.mit.edu	37	chr12	132325149	132325149	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccacgggactcaccactgGggcacgacacggtgcgtgca	13	15	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132325149	A	A	132325149	3	1	145	1	0	0	0	0	1	0	0	0	9749	1232	43	4	468	4	MMP17	12	132325149	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1426374	132325149	1526746	1176	125877											
EP400	57634	broad.mit.edu	37	chr12	132466568	132466568	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggggtgttagacgtgtctCcttgtgactcattggtagaa	13	7	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132466568	T	T	132466568	1	4	145	0	1	0	0	0	0	0	0	0	5191	870	30	4		4	EP400	12	132466568	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	141419	132466568	1385327	1177	125878											
EP400	57634	broad.mit.edu	37	chr12	132504520	132504520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgggcagcggtgaaccccGgctccatgaggtggcctgtc	15	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132504520	T	T	132504520	1	4	145	0	1	0	0	0	0	0	0	0	5191	1131	39	1		1	EP400	12	132504520	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	37952	132504520	1347375	1178	125879											
EP400	57634	broad.mit.edu	37	chr12	132514351	132514351	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggatcttgaggcagggcctGagagagcacgctgcgccgta	16	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132514351	C	C	132514351	2	2	145	1	0	0	0	0	0	0	0	1	5191	1277	45	4		4	EP400	12	132514351	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	9831	132514351	1337544	1179	125880											
CHFR	55743	broad.mit.edu	37	chr12	133428174	133428174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaggacagataggaacCcgcctgcgtgcggtggcgcg	16	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133428174	A	A	133428174	1	1	145	0	1	0	0	0	0	0	0	0	3368	638	22	2		2	CHFR	12	133428174	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	913823	133428174	423721	1180	125881											
ATP12A	479	broad.mit.edu	37	chr13	25268491	25268491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccagctaggtggtaatGggatcaggagggtgtgtttt	15	6	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25268491	T	T	25268491	1	4	145	0	1	0	0	0	0	0	0	0	1126	1363	47	2		2	ATP12A	13	25268491	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08		25268491	89901387	1181	125882											
GPR12	2835	broad.mit.edu	37	chr13	27333674	27333674	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaaaacaaaattggtgatGagtccaatgccggccagcag	11	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27333674	A	A	27333674	2	1	145	1	0	0	0	0	0	0	0	1	6700	1277	45	4		4	GPR12	13	27333674	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2065183	27333674	87836204	1182	125883											
C13orf33	84935	broad.mit.edu	37	chr13	31498393	31498394	+	Intron	INS	-	T	T													aatttgaaaggcactgttggINStttttttttctttcagtgat							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31498394	T	T	31498393	6	5	145	0	1	1	1	0	0	0	0	0	1740	1276	44	0		0	C13orf33	13	31498393	Intron	INS	-	TCGA-49-6743-01A-11D-1855-08	4164719	31498393	83671485	1183	125884											
PDS5B	23047	broad.mit.edu	37	chr13	33271019	33271019	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtgtcaaggccatattttCaaaagtgatggttattacaa	8	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33271019	T	T	33271019	3	4	145	1	0	0	0	0	1	0	0	0	11786	838	29	4	1634	4	PDS5B	13	33271019	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1772626	33271019	81898859	1184	125885											
MAB21L1	4081	broad.mit.edu	37	chr13	36049419	36049419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcccagtccgactctcggGgatgcttttcacactcgtag	10	14	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36049419	A	A	36049419	3	1	145	1	0	0	0	0	1	0	0	0	9229	1232	43	4	226	4	MAB21L1	13	36049419	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2778400	36049419	79120459	1185	125886											
POSTN	10631	broad.mit.edu	37	chr13	38145684	38145684	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttatttcaacattcggtgtGactcaactcaaatgtcaaag	6	8	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38145684	T	T	38145684	1	4	145	0	1	0	0	0	0	0	0	0	12354	1305	45	3		3	POSTN	13	38145684	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2096265	38145684	77024194	1186	125887											
FREM2	341640	broad.mit.edu	37	chr13	39262664	39262664	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcggctcctgaagattgccTaccagcccccttctgaagac	9	15	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39262664	G	G	39262664	3	3	145	1	0	0	0	0	1	0	0	0	6105	1522	53	5	1185	5	FREM2	13	39262664	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1116980	39262664	75907214	1187	125888											
FREM2	341640	broad.mit.edu	37	chr13	39265303	39265303	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgactccgagacccaggaAgacagttttgtgattaaact	10	8	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39265303	G	G	39265303	2	3	145	1	0	0	0	0	0	0	0	1	6105	69	3	5		5	FREM2	13	39265303	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	2639	39265303	75904575	1188	125889											
MRPS31	10240	broad.mit.edu	37	chr13	41345224	41345224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttccagaggacaaagggtGgcgggaaagggggcgaagag	20	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41345224	A	A	41345224	3	1	145	1	0	0	0	0	1	0	0	0	9935	1348	47	4	1166	4	MRPS31	13	41345224	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2079921	41345224	73824654	1189	125890			1	97		3	3	98	G		1.452308e-05
MRPS31	10240	broad.mit.edu	37	chr13	41345258	41345258	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgaagaggtaggaacgtcgaGactctaggaaacatcgccga	13	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41345258	C	C	41345258	2	2	145	1	0	0	0	0	0	0	0	1	9935	929	33	4		4	MRPS31	13	41345258	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	34	41345258	73824620	1190	125891			1	97		3	3	98	G		1.452308e-05
MRPS31	10240	broad.mit.edu	37	chr13	41345321	41345321	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caactgaaatggtgcgtcccGctgccaaacacgtccccgcc	9	17	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41345321	A	A	41345321	1	1	145	0	1	0	0	0	0	0	0	0	9935	1102	38	4		4	MRPS31	13	41345321	5'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	63	41345321	73824557	1191	125892			1	97		3	3	98	G		1.452308e-05
KIAA0564	23078	broad.mit.edu	37	chr13	42142257	42142257	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggttcacttcatccatatCttctttttttcagaatactc	4	10	5	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42142257	T	T	42142257	1	4	145	0	1	0	0	0	0	0	0	0	8255	928	32	4		4	KIAA0564	13	42142257	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	796936	42142257	73027621	1192	125893											
ZC3H13	23091	broad.mit.edu	37	chr13	46539289	46539289	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttattggcctttcaaccTtaagtaaaatgtaaaaggaa	6	5	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46539289	A	A	46539289	1	1	145	0	1	0	0	0	0	0	0	0	17691	1624	56	5		5	ZC3H13	13	46539289	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4397032	46539289	68630589	1193	125894											
RB1	5925	broad.mit.edu	37	chr13	49027259	49027259	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagatatgtaagcaaaatAtatgttatgttgaccattca	7	5	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49027259	G	G	49027259	1	3	145	0	1	0	0	0	0	0	0	0	13206	464	16	5		5	RB1	13	49027259	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2487970	49027259	66142619	1194	125895											
SERPINE3	647174	broad.mit.edu	37	chr13	51921265	51921265	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtccttccaaggcacttggCgaaagagattctcctccaca	8	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51921265	G	G	51921265	3	3	145	1	0	0	0	0	1	0	0	0	14226	760	27	4	605	4	SERPINE3	13	51921265	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2894006	51921265	63248613	1195	125896											
UTP14C	9724	broad.mit.edu	37	chr13	52604958	52604958	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattatcagtgagaagcgcaAcatccacgcagcagctcatc	9	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52604958	T	T	52604958	3	4	145	1	0	0	0	0	1	0	0	0	17223	43	2	5	2020	5	UTP14C	13	52604958	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	683693	52604958	62564920	1196	125897											
PCDH20	64881	broad.mit.edu	37	chr13	61986680	61986680	+	Missense_Mutation	SNP	T	G	G													ttgcactttaatgaccctttTgacatgaaatccctcagagt							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61986680	G	G	61986680	3	3	145	1	0	0	0	0	1	0	0	0	11609	1821	63	5	1307	5	PCDH20	13	61986680	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	9381722	61986680	53183198	1197	125898	547	2									
PCDH20	64881	broad.mit.edu	37	chr13	61986682	61986682	+	Missense_Mutation	SNP	A	C	C													gcactttaatgacccttttgAcatgaaatccctcagagttc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61986682	C	C	61986682	3	2	145	1	0	0	0	0	1	0	0	0	11609	275	10	5	1309	5	PCDH20	13	61986682	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	2	61986682	53183196	1198	125899	547	2									
KLHL1	57626	broad.mit.edu	37	chr13	70293684	70293684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgaactcaaacaggaaCttccatcacgacctccaact	4	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70293684	A	A	70293684	3	1	145	1	0	0	0	0	1	0	0	0	8436	565	20	3	426	3	KLHL1	13	70293684	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	8307002	70293684	44876194	1199	125900											
KLHL1	57626	broad.mit.edu	37	chr13	70681210	70681210	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacttgagtaatcaaaaccaGggtggcatctcttaacccac	7	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70681210	C	C	70681210	1	2	145	0	1	0	0	0	0	0	0	0	8436	1015	35	4		4	KLHL1	13	70681210	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	387526	70681210	44488668	1200	125901											
DACH1	1602	broad.mit.edu	37	chr13	72147052	72147052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgcaatggtgctgaggtGgttcatctggctcattgcca	12	8	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72147052	T	T	72147052	3	4	145	1	0	0	0	0	1	0	0	0	4253	1348	47	2	933	2	DACH1	13	72147052	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1465842	72147052	43022826	1201	125902											
DACH1	1602	broad.mit.edu	37	chr13	72147232	72147232	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagttttctaataatggtaGtcaaagaaacaatatttttc	5	4	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72147232	A	A	72147232	1	1	145	0	1	0	0	0	0	0	0	0	4253	1044	36	4		4	DACH1	13	72147232	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	180	72147232	43022646	1202	125903											
MYCBP2	23077	broad.mit.edu	37	chr13	77713245	77713245	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacttagttgtgggttacctCagaactgaaaagccttaatt	8	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77713245	T	T	77713245	1	4	145	0	1	0	0	0	0	0	0	0	10112	841	29	4		4	MYCBP2	13	77713245	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5566013	77713245	37456633	1203	125904											
NDFIP2	54602	broad.mit.edu	37	chr13	80117712	80117712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcatttattttcaactgGcttggattttgtttatcctt	8	6	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80117712	T	T	80117712	3	4	145	1	0	0	0	0	1	0	0	0	10341	1212	42	3	753	3	NDFIP2	13	80117712	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2404467	80117712	35052166	1204	125905											
UGGT2	55757	broad.mit.edu	37	chr13	96599463	96599463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaggactgttataattaCctcttgaatcacaataaacc	4	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96599463	A	A	96599463	1	1	145	0	1	0	0	0	0	0	0	0	17068	522	18	3		3	UGGT2	13	96599463	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	16481751	96599463	18570415	1205	125906											
IPO5	3843	broad.mit.edu	37	chr13	98655369	98655369	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgggtaagaactggagaaaGagggacttgcagcatgacca	14	6	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98655369	C	C	98655369	1	2	145	0	1	0	0	0	0	0	0	0	7866	957	33	4		4	IPO5	13	98655369	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2055906	98655369	16514509	1206	125907											
DOCK9	23348	broad.mit.edu	37	chr13	99459984	99459984	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtacagtttaaggagtctCtgagaaatttccgacagcgg	12	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99459984	G	G	99459984	3	3	145	1	0	0	0	0	1	0	0	0	4734	912	32	4	747	4	DOCK9	13	99459984	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	804615	99459984	15709894	1207	125908											
CLYBL	171425	broad.mit.edu	37	chr13	100511107	100511110	+	Intron	DEL	ACTT	-	-													acaataaactttttattgacActtacagaatgaagctcgac							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100511110	-	-	100511107	6	5	145	0	1	1	0	1	0	0	0	0	3605	174	6	0		0	CLYBL	13	100511107	Intron	DEL	ACTT	TCGA-49-6743-01A-11D-1855-08	1051123	100511107	14658771	1208	125909											
PCCA	5095	broad.mit.edu	37	chr13	100915132	100915132	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttattattttaaaataatatCatttaatcctattggaatta	2	3	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100915132	T	T	100915132	1	4	145	0	1	0	0	0	0	0	0	0	11598	841	29	4		4	PCCA	13	100915132	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	404025	100915132	14254746	1209	125910											
PCCA	5095	broad.mit.edu	37	chr13	101179908	101179908	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagaatgcttttaaaacttCtgcccatttttgttttccag	5	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101179908	A	A	101179908	1	1	145	0	1	0	0	0	0	0	0	0	11598	928	32	3		3	PCCA	13	101179908	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	264776	101179908	13989970	1210	125911											
NALCN	259232	broad.mit.edu	37	chr13	101707770	101707770	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggttcattttgcacacgacAgatttcatggttgtccttcc	9	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101707770	T	T	101707770	2	4	145	1	0	0	0	0	0	0	0	1	10242	175	7	5		5	NALCN	13	101707770	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	527862	101707770	13462108	1211	125912											
NALCN	259232	broad.mit.edu	37	chr13	101720126	101720126	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccttcctagaggattctgcTgaactgtaaatgatggcttt	9	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101720126	A	A	101720126	1	1	145	0	1	0	0	0	0	0	0	0	10242	1595	55	5		5	NALCN	13	101720126	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	12356	101720126	13449752	1212	125913											
NALCN	259232	broad.mit.edu	37	chr13	101728339	101728339	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcataatttgcacaaaagatCttgttacagttccatttttt	4	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101728339	G	G	101728339	1	3	145	0	1	0	0	0	0	0	0	0	10242	928	32	4		4	NALCN	13	101728339	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	8213	101728339	13441539	1213	125914											
NALCN	259232	broad.mit.edu	37	chr13	101760057	101760057	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcaacctgtaccttttcatCtctgcttgctcctttttttc	4	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101760057	A	A	101760057	3	1	145	1	0	0	0	0	1	0	0	0	10242	912	32	3	2864	3	NALCN	13	101760057	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	31718	101760057	13409821	1214	125915											
NALCN	259232	broad.mit.edu	37	chr13	101944443	101944443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgataacagcaataaacacGttctgaaaaaaatcacaaac	4	8	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101944443	T	T	101944443	3	4	145	1	0	0	0	0	1	0	0	0	10242	1136	40	3	4415	3	NALCN	13	101944443	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	184386	101944443	13225435	1215	125916											
C13orf27	93081	broad.mit.edu	37	chr13	103419696	103419696	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacgaaagaggtcttcatctCtgagtttatgctgctgcttt	9	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103419696	G	G	103419696	3	3	145	1	0	0	0	0	1	0	0	0	1736	913	32	4	260	4	C13orf27	13	103419696	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1475253	103419696	11750182	1216	125917											
KDELC1	79070	broad.mit.edu	37	chr13	103441508	103441508	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcagcacaacactgtcacCaactagcaaatatggcaggc	7	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103441508	T	T	103441508	3	4	145	1	0	0	0	0	1	0	0	0	8187	594	21	4	377	4	KDELC1	13	103441508	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	21812	103441508	11728370	1217	125918											
SLC10A2	6555	broad.mit.edu	37	chr13	103718716	103718716	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcaaacttttaaacccCtcctaaaaatatgtcacttg	2	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103718716	A	A	103718716	1	1	145	1	0	0	0	0	0	0	0	0	14487	696	24	2		2	SLC10A2	13	103718716	Translation_Start_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	277208	103718716	11451162	1218	125919											
TNFSF13B	10673	broad.mit.edu	37	chr13	108922168	108922168	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgcaggacatcaacaaacAcagataacaggaaatgatcc	7	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108922168	T	T	108922168	1	4	145	0	1	0	0	0	0	0	0	0	16429	174	6	5		5	TNFSF13B	13	108922168	5'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	5203452	108922168	6247710	1219	125920											
TNFSF13B	10673	broad.mit.edu	37	chr13	108959154	108959154	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtataaccacttatagttctTgtaaatcattttttcccagg	5	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108959154	C	C	108959154	1	2	145	0	1	0	0	0	0	0	0	0	16429	1827	63	5		5	TNFSF13B	13	108959154	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	36986	108959154	6210724	1220	125921											
MYO16	23026	broad.mit.edu	37	chr13	109562285	109562285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgtaattaattaatatGtgttaatttatggaaatgaa	6	2	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109562285	T	T	109562285	1	4	145	0	1	0	0	0	0	0	0	0	10158	1392	48	3		3	MYO16	13	109562285	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	603131	109562285	5607593	1221	125922											
MYO16	23026	broad.mit.edu	37	chr13	109817503	109817503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatatgaaaatgaagtagGgttaagaactggaaaataga	10	1	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109817503	T	T	109817503	1	4	145	0	1	0	0	0	0	0	0	0	10158	1247	43	2		2	MYO16	13	109817503	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	255218	109817503	5352375	1222	125923											
COL4A1	1282	broad.mit.edu	37	chr13	110823055	110823055	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctcccggctaatcctGggaaacccacctcacccttt	8	17	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110823055	A	A	110823055	3	1	145	1	0	0	0	0	1	0	0	0	3721	1348	47	4	1472	4	COL4A1	13	110823055	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1005552	110823055	4346823	1223	125924											
MCF2L	23263	broad.mit.edu	37	chr13	113729480	113729480	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctgctcagcaagtccctgGagctgcaccgccgcctggag	14	15	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113729480	A	A	113729480	3	1	145	1	0	0	0	0	1	0	0	0	9472	1175	41	4	1593	4	MCF2L	13	113729480	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2906425	113729480	1440398	1224	125925											
F7	2155	broad.mit.edu	37	chr13	113771983	113771983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtccgaccgcggtgctGggtgggtgccactctcccct	13	17	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113771983	T	T	113771983	1	4	145	0	1	0	0	0	0	0	0	0	5392	1363	47	2		2	F7	13	113771983	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	42503	113771983	1397895	1225	125926											
TMCO3	55002	broad.mit.edu	37	chr13	114152629	114152629	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttatttcttaatatatcTcactcttcttttcttacaaa	1	9	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114152629	G	G	114152629	1	3	145	0	1	0	0	0	0	0	0	0	16120	1566	54	5		5	TMCO3	13	114152629	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	380646	114152629	1017249	1226	125927											
TFDP1	7027	broad.mit.edu	37	chr13	114288091	114288091	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctccctgagggcatgttgGggtggcggctccgtgagcgg	19	11	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114288091	C	C	114288091	1	2	145	0	1	0	0	0	0	0	0	0	15920	1247	43	4		4	TFDP1	13	114288091	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	135462	114288091	881787	1227	125928											
POTEG	404785	broad.mit.edu	37	chr14	19553558	19553558	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaacgtgggcacttctggaGaccacgacgattctgctatg	12	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19553558	A	A	19553558	3	1	145	1	0	0	0	0	1	0	0	0	12362	942	33	4	144	4	POTEG	14	19553558	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08		19553558	87795982	1228	125929											
OR4M1	441670	broad.mit.edu	37	chr14	20249188	20249188	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctcaggtgagaataccaAcagggccatgtccacctgct	11	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20249188	T	T	20249188	3	4	145	1	0	0	0	0	1	0	0	0	11169	43	2	5	709	5	OR4M1	14	20249188	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	695630	20249188	87100352	1229	125930											
OR4N2	390429	broad.mit.edu	37	chr14	20296192	20296192	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccgacacatttgtggtGgagcttctgatggtcttcaa	11	9	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20296192	A	A	20296192	2	1	145	1	0	0	0	0	0	0	0	1	11171	1335	47	4		4	OR4N2	14	20296192	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	47004	20296192	87053348	1230	125931											
OR4K2	390431	broad.mit.edu	37	chr14	20344489	20344489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggctctctaattcctgGgaactacagatgtttttctt	9	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20344489	T	T	20344489	3	4	145	1	0	0	0	0	1	0	0	0	11166	1241	43	2	65	2	OR4K2	14	20344489	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	48297	20344489	87005051	1231	125932											
OR4K1	79544	broad.mit.edu	37	chr14	20404637	20404637	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttcctgtggacaaatttcTttctgtgttctacactgttt	6	9	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20404637	A	A	20404637	3	1	145	1	0	0	0	0	1	0	0	0	11161	1609	56	5	814	5	OR4K1	14	20404637	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	60148	20404637	86944903	1232	125933											
OR4K1	79544	broad.mit.edu	37	chr14	20404658	20404658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgttctacactgtttGtactcccttgttgaacccca	6	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20404658	T	T	20404658	3	4	145	1	0	0	0	0	1	0	0	0	11161	1377	48	3	835	3	OR4K1	14	20404658	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	21	20404658	86944882	1233	125934											
OR4N5	390437	broad.mit.edu	37	chr14	20612592	20612593	+	Missense_Mutation	DNP	AG	GA	GA													ggagcactcctctgaaggaaAgagcaaggctatttccacat							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	20612593	GA	GA	20612592	3	3	145	1	0	0	0	0	1	0	0	0	11173	72	3	5	700	5	OR4N5	14	20612592	Missense_Mutation	DNP	AG	TCGA-49-6743-01A-11D-1855-08	207934	20612592	86736948	1234	125935											
OR11H6	122748	broad.mit.edu	37	chr14	20692166	20692166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccactgtcccaaacatgCtagtcaatatcctctctgag	5	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20692166	A	A	20692166	3	1	145	1	0	0	0	0	1	0	0	0	11023	796	28	3	300	3	OR11H6	14	20692166	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	79574	20692166	86657374	1235	125936											
TEP1	7011	broad.mit.edu	37	chr14	20846470	20846470	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgacccagaatgctgctgTctgtcgtctgccaccctcca	9	15	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20846470	A	A	20846470	1	1	145	0	1	0	0	0	0	0	0	0	15881	1682	58	5		5	TEP1	14	20846470	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	154304	20846470	86503070	1236	125937											
TEP1	7011	broad.mit.edu	37	chr14	20852926	20852926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagaccccagccagcctcCctccaccaaccaccagacat	4	22	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20852926	A	A	20852926	1	1	145	0	1	0	0	0	0	0	0	0	15881	638	22	2		2	TEP1	14	20852926	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	6456	20852926	86496614	1237	125938											
METT11D1	64745	broad.mit.edu	37	chr14	21463338	21463338	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacaggtactggtggagaaTggaacaaaagctgggcacag	15	6	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21463338	G	G	21463338	3	3	145	1	0	0	0	0	1	0	0	0	9584	1461	51	5	929	5	METT11D1	14	21463338	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	610412	21463338	85886202	1238	125939											
OR10G2	26534	broad.mit.edu	37	chr14	22102184	22102185	+	Missense_Mutation	DNP	GG	TT	TT													cagccgctgccccatccaggGggtctttggagccagcccta							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22102185	TT	TT	22102184	3	4	145	1	0	0	0	0	1	0	0	0	10993	1232	43	2	120	2	OR10G2	14	22102184	Missense_Mutation	DNP	GG	TCGA-49-6743-01A-11D-1855-08	638846	22102184	85247356	1239	125940											
OXA1L	5018	broad.mit.edu	37	chr14	23237424	23237424	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggttagggatttaacctcAtagatggcaattctttgaat	10	5	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23237424	T	T	23237424	1	4	145	0	1	0	0	0	0	0	0	0	11422	232	8	5		5	OXA1L	14	23237424	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1135240	23237424	84112116	1240	125941											
REM2	161253	broad.mit.edu	37	chr14	23353842	23353842	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catatggttgagcatatcccActcatagcttccttttcttt	5	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23353842	T	T	23353842	1	4	145	0	1	0	0	0	0	0	0	0	13331	174	6	5		5	REM2	14	23353842	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	116418	23353842	83995698	1241	125942											
HAUS4	54930	broad.mit.edu	37	chr14	23421778	23421778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctttgctagggtgaggCttaagccactctcatccaca	9	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23421778	A	A	23421778	3	1	145	1	0	0	0	0	1	0	0	0	7034	797	28	3	953	3	HAUS4	14	23421778	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	67936	23421778	83927762	1242	125943											
MYH6	4624	broad.mit.edu	37	chr14	23872645	23872645	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaagatcacccgggacttCtccagcaggtctgaggtggg	15	10	3	2	rs178646		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23872645	T	T	23872645	2	4	145	1	0	0	0	0	0	0	0	1	10132	912	32	4		4	MYH6	14	23872645	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	450867	23872645	83476895	1243	125944											
MYH7	4625	broad.mit.edu	37	chr14	23897948	23897948	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccattggggctgtgcccgtCcactgtgcctgagcccagca	13	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23897948	G	G	23897948	1	3	145	0	1	0	0	0	0	0	0	0	10133	870	30	4		4	MYH7	14	23897948	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	25303	23897948	83451592	1244	125945											
LRRC16B	90668	broad.mit.edu	37	chr14	24524410	24524410	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggggctaagaaggaagTggggagcaggtgtgagccag	21	4	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24524410	A	A	24524410	1	1	145	0	1	0	0	0	0	0	0	0	9059	1711	59	5		5	LRRC16B	14	24524410	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	626462	24524410	82825130	1245	125946											
RABGGTA	5875	broad.mit.edu	37	chr14	24737854	24737854	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgggtcaaggaaatgcccCagcctaaccacttttttgac	8	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24737854	T	T	24737854	1	4	145	0	1	0	0	0	0	0	0	0	13075	609	21	4		4	RABGGTA	14	24737854	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	213444	24737854	82611686	1246	125947											
PRKD1	5587	broad.mit.edu	37	chr14	30103538	30103538	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtttactctgagtaatgcaGaaatctcacagtcctcacgg	9	10	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30103538	A	A	30103538	1	1	145	0	1	0	0	0	0	0	0	0	12624	957	33	4		4	PRKD1	14	30103538	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	5365684	30103538	77246002	1247	125948											
PSMA6	5687	broad.mit.edu	37	chr14	35777332	35777332	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatagttaataattgcagaaTataagaatttttcagccaag	6	4	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35777332	C	C	35777332	1	2	145	0	1	0	0	0	0	0	0	0	12777	1421	49	5		5	PSMA6	14	35777332	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	5673794	35777332	71572208	1248	125949											
SOS2	6655	broad.mit.edu	37	chr14	50626680	50626680	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtccctccataatgaattCattacaacactgtccaatat	4	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50626680	T	T	50626680	3	4	145	1	0	0	0	0	1	0	0	0	15051	835	29	4	2733	4	SOS2	14	50626680	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	14849348	50626680	56722860	1249	125950											
FRMD6	122786	broad.mit.edu	37	chr14	52179252	52179252	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcccctggacaaatgttGgaaaattggtgtttgtggta	11	5	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52179252	T	T	52179252	4	4	145	1	0	0	0	0	0	1	0	0	6114	1349	47	2	838	2	FRMD6	14	52179252	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1552572	52179252	55170288	1250	125951											
PSMC6	5706	broad.mit.edu	37	chr14	53178230	53178230	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctatcagaacagatccgGgaattaagagaggttggtac	14	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53178230	T	T	53178230	2	4	145	1	0	0	0	0	0	0	0	1	12797	1219	43	2		2	PSMC6	14	53178230	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	998978	53178230	54171310	1251	125952											
RTN1	6252	broad.mit.edu	37	chr14	60212963	60212963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcagaactaaataagcCacgagactctatcccaggca	7	11	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60212963	A	A	60212963	3	1	145	1	0	0	0	0	1	0	0	0	13836	594	21	2	1949	2	RTN1	14	60212963	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	7034733	60212963	47136577	1252	125953											
RDH11	51109	broad.mit.edu	37	chr14	68151874	68151874	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agatgagtgccgaaccagttCagattggactgtgccagggt	14	8	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68151874	G	G	68151874	3	3	145	1	0	0	0	0	1	0	0	0	13298	835	29	4	252	4	RDH11	14	68151874	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	7938911	68151874	39197666	1253	125954											
ACTN1	87	broad.mit.edu	37	chr14	69346715	69346715	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggaggcccggaactcattCatctgctcctggctgatgcc	11	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69346715	T	T	69346715	3	4	145	1	0	0	0	0	1	0	0	0	204	826	29	4	520	4	ACTN1	14	69346715	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1194841	69346715	38002825	1254	125955											
MAP3K9	4293	broad.mit.edu	37	chr14	71209206	71209206	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccgttccaggatgtcaaTctcccgctcggccagctcct	8	18	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71209206	A	A	71209206	3	1	145	1	0	0	0	0	1	0	0	0	9349	1435	50	5	1959	5	MAP3K9	14	71209206	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1862491	71209206	36140334	1255	125956											
PCNX	22990	broad.mit.edu	37	chr14	71485880	71485880	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatactcactgcttaagGtaccagcatctcttcttttc	5	12	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71485880	T	T	71485880	5	4	145	1	0	0	0	0	0	0	1	0	11685	1275	44	3	3197	3	PCNX	14	71485880	Splice_Site	SNP	G	TCGA-49-6743-01A-11D-1855-08	276674	71485880	35863660	1256	125957											
ABCD4	5826	broad.mit.edu	37	chr14	74757123	74757123	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccttgattaggggtttgtCagaggagggggcagagatgg	18	4	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74757123	T	T	74757123	3	4	145	1	0	0	0	0	1	0	0	0	63	826	29	4	654	4	ABCD4	14	74757123	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3271243	74757123	32592417	1257	125958											
ABCD4	5826	broad.mit.edu	37	chr14	74762462	74762462	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatcacacagctagtaactgGcacagctaggatttgaactt	9	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74762462	C	C	74762462	1	2	145	0	1	0	0	0	0	0	0	0	63	1218	42	4		4	ABCD4	14	74762462	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	5339	74762462	32587078	1258	125959											
LTBP2	4053	broad.mit.edu	37	chr14	74989535	74989535	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagctggtagccagggcTgcagacacatctgtatccat	12	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74989535	A	A	74989535	3	1	145	1	0	0	0	0	1	0	0	0	9161	1580	55	5	2932	5	LTBP2	14	74989535	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	227073	74989535	32360005	1259	125960											
LTBP2	4053	broad.mit.edu	37	chr14	75070356	75070356	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtttgatacagtggttggTgctgtttgctgttgtccatc	12	7	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75070356	C	C	75070356	3	2	145	1	0	0	0	0	1	0	0	0	9161	1696	59	5	5058	5	LTBP2	14	75070356	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	80821	75070356	32279184	1260	125961											
PGF	5228	broad.mit.edu	37	chr14	75420616	75420616	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccagcttaccttccacctCtgacgagccgttcccagcag	9	17	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75420616	T	T	75420616	3	4	145	1	0	0	0	0	1	0	0	0	11883	922	32	4	427	4	PGF	14	75420616	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	350260	75420616	31928924	1261	125962											
TMED10	10972	broad.mit.edu	37	chr14	75643138	75643138	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcactagcaggtccttgtGaatctcctcacggaggcact	10	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75643138	A	A	75643138	3	1	145	1	0	0	0	0	1	0	0	0	16126	1290	45	4	534	4	TMED10	14	75643138	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	222522	75643138	31706402	1262	125963											
TTLL5	23093	broad.mit.edu	37	chr14	76175478	76175478	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgcatctgtgagtggtcacGacaagctaaaaaagcctggt	11	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76175478	C	C	76175478	1	2	145	0	1	0	0	0	0	0	0	0	16856	1073	37	4		4	TTLL5	14	76175478	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	532340	76175478	31174062	1263	125964											
C14orf145	145508	broad.mit.edu	37	chr14	81329195	81329195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctccagttcctgaagcCgccgctccacccgatctgaa	7	18	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81329195	A	A	81329195	3	1	145	1	0	0	0	0	1	0	0	0	1762	652	23	1	2684	1	C14orf145	14	81329195	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5153717	81329195	26020345	1264	125965											
TSHR	7253	broad.mit.edu	37	chr14	81448772	81448772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaattggtgcccaggtctgTgctgaggagttggagcctgt	16	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81448772	C	C	81448772	1	2	145	0	1	0	0	0	0	0	0	0	16747	1711	59	5		5	TSHR	14	81448772	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	119577	81448772	25900768	1265	125966											
KCNK10	54207	broad.mit.edu	37	chr14	88658539	88658539	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttttcccgccagagccCcagtgcctggcctgcccagg	10	16	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88658539	A	A	88658539	1	1	145	0	1	0	0	0	0	0	0	0	8129	638	22	2		2	KCNK10	14	88658539	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	7209767	88658539	18691001	1266	125967											
ZC3H14	79882	broad.mit.edu	37	chr14	89063215	89063215	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgccatttccatttcttacAccccatttaacgtatctcgg	4	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89063215	T	T	89063215	1	4	145	0	1	0	0	0	0	0	0	0	17692	174	6	5		5	ZC3H14	14	89063215	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	404676	89063215	18286325	1267	125968											
KCNK13	56659	broad.mit.edu	37	chr14	90651131	90651131	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggcagagagtgacacGgacgggcgccggctctcagg	20	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90651131	A	A	90651131	2	1	145	1	0	0	0	0	0	0	0	1	8131	1103	39	4		4	KCNK13	14	90651131	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1587916	90651131	16698409	1268	125969											
C14orf102	55051	broad.mit.edu	37	chr14	90782803	90782803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttaagctgatataatggTagagctctcttccgactgag	9	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90782803	A	A	90782803	1	1	145	0	1	0	0	0	0	0	0	0	1748	1653	57	5		5	C14orf102	14	90782803	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	131672	90782803	16566737	1269	125970											
COX8C	341947	broad.mit.edu	37	chr14	93813555	93813558	+	5'UTR	DEL	GTTA	-	-													tcacgagcactggagcttgcGttacttggcctcacctcacc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93813558	-	-	93813555	6	5	145	0	1	1	0	1	0	0	0	0	3818	1160	40	0		0	COX8C	14	93813555	5'UTR	DEL	GTTA	TCGA-49-6743-01A-11D-1855-08	3030752	93813555	13535985	1270	125971											
KIAA1409	57578	broad.mit.edu	37	chr14	94004362	94004362	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcccacgttagaagagcaGttgtcacctgcttctcagca	9	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94004362	A	A	94004362	3	1	145	1	0	0	0	0	1	0	0	0	8300	1029	36	4	653	4	KIAA1409	14	94004362	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	190807	94004362	13345178	1271	125972											
KIAA1409	57578	broad.mit.edu	37	chr14	94088960	94088960	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcaaagttcccgaagatgCagagaaccccacagaaagtg	9	12	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94088960	T	T	94088960	3	4	145	1	0	0	0	0	1	0	0	0	8300	710	25	4	4956	4	KIAA1409	14	94088960	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	84598	94088960	13260580	1272	125973											
PPP4R4	57718	broad.mit.edu	37	chr14	94712934	94712934	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggttggttctggaattacCaaaactcttcatattttcaa	6	7	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94712934	T	T	94712934	1	4	145	0	1	0	0	0	0	0	0	0	12506	609	21	4		4	PPP4R4	14	94712934	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	623974	94712934	12636606	1273	125974											
PPP4R4	57718	broad.mit.edu	37	chr14	94731152	94731152	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctctaatgcttaatttctCagaacaattttctagaccta	3	9	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94731152	G	G	94731152	1	3	145	0	1	0	0	0	0	0	0	0	12506	841	29	4		4	PPP4R4	14	94731152	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	18218	94731152	12618388	1274	125975											
SERPINA10	51156	broad.mit.edu	37	chr14	94756593	94756593	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggccctgtggcccccagcAtcaagcctgtcatggccaag	11	16	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94756593	T	T	94756593	3	4	145	1	0	0	0	0	1	0	0	0	14200	217	8	5	1012	5	SERPINA10	14	94756593	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	25441	94756593	12592947	1275	125976											
C14orf49	161176	broad.mit.edu	37	chr14	95932328	95932328	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctgggcatcttcgtcCacgctggggtccccgatcct	10	16	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95932328	A	A	95932328	2	1	145	1	0	0	0	0	0	0	0	1	1789	581	21	2		2	C14orf49	14	95932328	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1175735	95932328	11417212	1276	125977											
BDKRB1	623	broad.mit.edu	37	chr14	96730746	96730746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggacaaggtgcgggggcCgcaaggatagcaagaccaca	16	10	0	1	rs113666900	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96730746	A	A	96730746	3	1	145	1	0	0	0	0	1	0	0	0	1397	652	23	1	729	1	BDKRB1	14	96730746	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	798418	96730746	10618794	1277	125978											
EML1	2009	broad.mit.edu	37	chr14	100402669	100402669	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagactacgaaatcctctActgtgagtaccaccccgggg	11	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100402669	G	G	100402669	3	3	145	1	0	0	0	0	1	0	0	0	5138	391	14	5	2228	5	EML1	14	100402669	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	3671923	100402669	6946871	1278	125979											
EVL	51466	broad.mit.edu	37	chr14	100582494	100582494	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatggcacctgtgaggaaAgcagggccttgtaacaagag	15	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100582494	C	C	100582494	1	2	145	0	1	0	0	0	0	0	0	0	5333	87	3	5		5	EVL	14	100582494	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	179825	100582494	6767046	1279	125980											
DYNC1H1	1778	broad.mit.edu	37	chr14	102506696	102506696	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcggaggcggtggtgaggctGagctgccttcccgcgtttaa	17	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102506696	C	C	102506696	2	2	145	1	0	0	0	0	0	0	0	1	4881	1277	45	4		4	DYNC1H1	14	102506696	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	1924202	102506696	4842844	1280	125981											
KLC1	3831	broad.mit.edu	37	chr14	104135917	104135917	+	Frame_Shift_Del	DEL	G	-	-													gctattcgtgagaaaactttGggcaaagatcatcctgcggt							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104135917	-	-	104135917	7	5	145	1	0	1	0	1	0	0	0	0	8404	1339	47	0	885	0	KLC1	14	104135917	Frame_Shift_Del	DEL	G	TCGA-49-6743-01A-11D-1855-08	1629221	104135917	3213623	1281	125982											
ZFYVE21	79038	broad.mit.edu	37	chr14	104194095	104194095	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccagcaccactgtcgcCgctgcgggaagtgcttctgc	12	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104194095	T	T	104194095	3	4	145	1	0	0	0	0	1	0	0	0	17793	652	23	4	212	4	ZFYVE21	14	104194095	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	58178	104194095	3155445	1282	125983											
TDRD9	122402	broad.mit.edu	37	chr14	104470657	104470657	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactccatccctgatcatgtTgttcctgagatgttggtaat	8	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104470657	G	G	104470657	2	3	145	1	0	0	0	0	0	0	0	1	15858	1799	63	5		5	TDRD9	14	104470657	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	276562	104470657	2878883	1283	125984											
KIF26A	26153	broad.mit.edu	37	chr14	104642496	104642496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtctgcactgccgacaGccgtgaccccacgccgcagc	11	19	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104642496	T	T	104642496	3	4	145	1	0	0	0	0	1	0	0	0	8364	971	34	3	3417	3	KIF26A	14	104642496	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	171839	104642496	2707044	1284	125985											
NDN	4692	broad.mit.edu	37	chr15	23932040	23932040	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctggtccttgaccagcaCgtaccacatgagctcgtgcg	10	14	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23932040	G	G	23932040	3	3	145	1	0	0	0	0	1	0	0	0	10342	536	19	4	644	4	NDN	15	23932040	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08		23932040	78599352	1285	125986											
UBE3A	7337	broad.mit.edu	37	chr15	25599515	25599515	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctaatcagaacagagTccctggtatagccaccgtca	7	14	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25599515	C	C	25599515	3	2	145	1	0	0	0	0	1	0	0	0	17005	1667	58	5	291	5	UBE3A	15	25599515	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1667475	25599515	76931877	1286	125987											
OCA2	4948	broad.mit.edu	37	chr15	28231772	28231772	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatcccgtttctgaaaaTatggctactaagatcatcta	5	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28231772	A	A	28231772	2	1	145	1	0	0	0	0	0	0	0	1	10910	1396	49	5		5	OCA2	15	28231772	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	2632257	28231772	74299620	1287	125988											
HERC2	8924	broad.mit.edu	37	chr15	28538288	28538288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaactgaatgttggacaacGtaaaaataaaatacatcaat	5	5	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28538288	T	T	28538288	1	4	145	0	1	0	0	0	0	0	0	0	7125	1160	40	3		3	HERC2	15	28538288	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	306516	28538288	73993104	1288	125989											
TJP1	7082	broad.mit.edu	37	chr15	29993907	29993907	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatcacctatgagagaaaaGaagttgatgtcatttacagt	10	5	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29993907	C	C	29993907	1	2	145	0	1	0	0	0	0	0	0	0	16052	957	33	4		4	TJP1	15	29993907	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1455619	29993907	72537485	1289	125990											
TJP1	7082	broad.mit.edu	37	chr15	30012003	30012003	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttggatctacatgcgacGacaatgatggttcttgatct	10	7	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30012003	A	A	30012003	3	1	145	1	0	0	0	0	1	0	0	0	16052	1059	37	4	2301	4	TJP1	15	30012003	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	18096	30012003	72519389	1290	125991											
OTUD7A	161725	broad.mit.edu	37	chr15	31795838	31795838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctatctgctttctagCtgggatgctatgctttctgt	10	9	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31795838	A	A	31795838	1	1	145	0	1	0	0	0	0	0	0	0	11412	812	28	3		3	OTUD7A	15	31795838	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1783835	31795838	70735554	1291	125992											
RYR3	6263	broad.mit.edu	37	chr15	33936683	33936683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcagcaagcgcctcccgaCgtttgtcaacgtgccaaagg	11	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33936683	A	A	33936683	3	1	145	1	0	0	0	0	1	0	0	0	13881	536	19	3	3838	3	RYR3	15	33936683	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2140845	33936683	68594709	1292	125993											
RYR3	6263	broad.mit.edu	37	chr15	34129232	34129232	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttcacacaactgtaattGgtctgagcactaaccttact	6	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34129232	A	A	34129232	1	1	145	0	1	0	0	0	0	0	0	0	13881	1363	47	4		4	RYR3	15	34129232	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	192549	34129232	68402160	1293	125994											
CHRM5	1133	broad.mit.edu	37	chr15	34356288	34356288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcatcacatggacccCgtataacatcatggtcctgg	7	13	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34356288	A	A	34356288	3	1	145	1	0	0	0	0	1	0	0	0	3411	652	23	1	1372	1	CHRM5	15	34356288	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	227056	34356288	68175104	1294	125995											
ATPBD4	89978	broad.mit.edu	37	chr15	35742776	35742776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcttcagctgtgactcCacatttttatattctaaatc	3	9	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35742776	A	A	35742776	1	1	145	0	1	0	0	0	0	0	0	0	1206	609	21	2		2	ATPBD4	15	35742776	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1386488	35742776	66788616	1295	125996											
MEIS2	4212	broad.mit.edu	37	chr15	37184518	37184518	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgggtggtggggatggctTggcaaatatgaatgcattgg	18	4	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37184518	A	A	37184518	2	1	145	1	0	0	0	0	0	0	0	1	9561	1799	63	5		5	MEIS2	15	37184518	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	1441742	37184518	65346874	1296	125997											
TMCO5A	145942	broad.mit.edu	37	chr15	38234612	38234612	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatctggttgaccccagtaGatcacaccaacttaaaactt	6	11	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38234612	C	C	38234612	1	2	145	0	1	0	0	0	0	0	0	0	16122	957	33	4		4	TMCO5A	15	38234612	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1050094	38234612	64296780	1297	125998											
PLCB2	5330	broad.mit.edu	37	chr15	40582826	40582826	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttggtcatgccctggatcCgctccagtctctttgtctcc	8	15	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40582826	T	T	40582826	3	4	145	1	0	0	0	0	1	0	0	0	12123	652	23	4	412	4	PLCB2	15	40582826	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2348214	40582826	61948566	1298	125999											
CASC5	57082	broad.mit.edu	37	chr15	40916208	40916208	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatcatcaaatttcataGtgctgctatggatgaaaagg	9	5	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40916208	C	C	40916208	3	2	145	1	0	0	0	0	1	0	0	0	2689	1029	36	4	3862	4	CASC5	15	40916208	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	333382	40916208	61615184	1299	126000											
INO80	54617	broad.mit.edu	37	chr15	41337298	41337298	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaccacagcagacacgCttattcagtgctccatggag	8	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41337298	T	T	41337298	1	4	145	0	1	0	0	0	0	0	0	0	7816	812	28	4		4	INO80	15	41337298	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	421090	41337298	61194094	1300	126001											
RTF1	23168	broad.mit.edu	37	chr15	41750015	41750015	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtctggaacagatgacagaGaaagagagagagcaagaact	13	6	1	6			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41750015	A	A	41750015	2	1	145	1	0	0	0	0	0	0	0	1	13832	933	33	4		4	RTF1	15	41750015	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	412717	41750015	60781377	1301	126002											
RTF1	23168	broad.mit.edu	37	chr15	41769312	41769312	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtaaggggatacttgatatgGagtcagttgtatgtagccaa	13	4	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41769312	C	C	41769312	1	2	145	0	1	0	0	0	0	0	0	0	13832	1189	41	4		4	RTF1	15	41769312	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	19297	41769312	60762080	1302	126003											
LTK	4058	broad.mit.edu	37	chr15	41804845	41804845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcacgtggacttcgttaccCtgagggtgaaacctccaact	10	13	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41804845	A	A	41804845	1	1	145	0	1	0	0	0	0	0	0	0	9167	696	24	2		2	LTK	15	41804845	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	35533	41804845	60726547	1303	126004											
TYRO3	7301	broad.mit.edu	37	chr15	41860509	41860509	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccccgaggcccctttggaAggccccctgggaccctacaa	10	17	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41860509	T	T	41860509	3	4	145	1	0	0	0	0	1	0	0	0	16940	69	3	5	1086	5	TYRO3	15	41860509	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	55664	41860509	60670883	1304	126005											
MGA	23269	broad.mit.edu	37	chr15	42021492	42021492	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctcctccccatctccatCatttcagcagcaaacttcat	2	18	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42021492	A	A	42021492	4	1	145	1	0	0	0	0	0	1	0	0	9633	838	29	3	3826	3	MGA	15	42021492	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	160983	42021492	60509900	1305	126006											
TMEM87A	25963	broad.mit.edu	37	chr15	42503975	42503975	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaggttgaagtaTattaggttaaaatgatctat	7	1	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42503975	C	C	42503975	1	2	145	0	1	0	0	0	0	0	0	0	16333	1421	49	5		5	TMEM87A	15	42503975	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	482483	42503975	60027417	1306	126007											
STRC	161497	broad.mit.edu	37	chr15	43910166	43910166	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagttggggtaggggggccCccaggaactaaggctcccag	17	11	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43910166	G	G	43910166	2	3	145	1	0	0	0	0	0	0	0	1	15446	610	22	4		4	STRC	15	43910166	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1406191	43910166	58621226	1307	126008											
PDIA3	2923	broad.mit.edu	37	chr15	44057715	44057715	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaagactgtggcatatacaGagcaaaaaatgaccagtggc	10	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44057715	C	C	44057715	3	2	145	1	0	0	0	0	1	0	0	0	11763	943	33	4	692	4	PDIA3	15	44057715	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	147549	44057715	58473677	1308	126009											
PDIA3	2923	broad.mit.edu	37	chr15	44058167	44058167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttattgcttactatgatgtgGactatgaaaagaacgctaaa	8	5	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44058167	T	T	44058167	3	4	145	1	0	0	0	0	1	0	0	0	11763	1174	41	3	828	3	PDIA3	15	44058167	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	452	44058167	58473225	1309	126010											
MFAP1	4236	broad.mit.edu	37	chr15	44101975	44101975	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaaggcaccccggtgaTaatacttctgtaagaacttg	10	8	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44101975	C	C	44101975	3	2	145	1	0	0	0	0	1	0	0	0	9606	1406	49	5	306	5	MFAP1	15	44101975	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	43808	44101975	58429417	1310	126011											
SPG11	80208	broad.mit.edu	37	chr15	44865871	44865871	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgcatcggtcaggctgctGagaggccaagattttccgga	13	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44865871	A	A	44865871	4	1	145	1	0	0	0	0	0	1	0	0	15159	1299	45	4	1288	4	SPG11	15	44865871	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	763896	44865871	57665521	1311	126012											
SHF	90525	broad.mit.edu	37	chr15	45470396	45470396	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcctcatagggctccaTgtagccatcattttcaggga	10	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45470396	C	C	45470396	3	2	145	1	0	0	0	0	1	0	0	0	14390	1464	51	5	883	5	SHF	15	45470396	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	604525	45470396	57060996	1312	126013											
SEMA6D	80031	broad.mit.edu	37	chr15	48022551	48022551	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccacagtggtgcaggtcttCctgtggactagacgtcccag	13	12	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48022551	G	G	48022551	1	3	145	0	1	0	0	0	0	0	0	0	14155	870	30	4		4	SEMA6D	15	48022551	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2552155	48022551	54508841	1313	126014											
SEMA6D	80031	broad.mit.edu	37	chr15	48053316	48053316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctccccaaaaatgttcGcagttaaaaactgctttggt	7	11	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48053316	T	T	48053316	1	4	145	0	1	0	0	0	0	0	0	0	14155	1102	38	3		3	SEMA6D	15	48053316	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	30765	48053316	54478076	1314	126015											
SEMA6D	80031	broad.mit.edu	37	chr15	48062707	48062707	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcaggtgtacgatgggaAgtccagtctggagagtccaa	13	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48062707	T	T	48062707	3	4	145	1	0	0	0	0	1	0	0	0	14155	72	3	5	2060	5	SEMA6D	15	48062707	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	9391	48062707	54468685	1315	126016											
MYEF2	50804	broad.mit.edu	37	chr15	48451078	48451078	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcacagttccagctatgctGaacacttcctttagcttctt	5	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48451078	A	A	48451078	2	1	145	1	0	0	0	0	0	0	0	1	10118	1281	45	4		4	MYEF2	15	48451078	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	388371	48451078	54080314	1316	126017											
FBN1	2200	broad.mit.edu	37	chr15	48777563	48777563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaacatgaggctagaacCtactcaccggtgcatgatct	8	11	3	3	rs140602		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48777563	A	A	48777563	1	1	145	0	1	0	0	0	0	0	0	0	5759	696	24	2		2	FBN1	15	48777563	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	326485	48777563	53753829	1317	126018											
FBN1	2200	broad.mit.edu	37	chr15	48805630	48805630	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactaagttcaaaaaagccaCgggactgtattagtctcttc	7	9	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48805630	T	T	48805630	1	4	145	0	1	0	0	0	0	0	0	0	5759	551	19	4		4	FBN1	15	48805630	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	28067	48805630	53725762	1318	126019											
CEP152	22995	broad.mit.edu	37	chr15	49031278	49031278	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgtctctttggatcccAcatgctttatgctctgatgc	8	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49031278	G	G	49031278	3	3	145	1	0	0	0	0	1	0	0	0	3278	159	6	5	835	5	CEP152	15	49031278	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	225648	49031278	53500114	1319	126020											
SHC4	399694	broad.mit.edu	37	chr15	49182856	49182856	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggccaggctggaccttggTcatatggtgggatgaacgaa	15	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49182856	C	C	49182856	1	2	145	0	1	0	0	0	0	0	0	0	14386	1682	58	5		5	SHC4	15	49182856	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	151578	49182856	53348536	1320	126021											
C15orf33	196951	broad.mit.edu	37	chr15	49833939	49833939	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcatcattaaagaggtaaCtcgattctggaaatgcttca	7	7	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49833939	T	T	49833939	3	4	145	1	0	0	0	0	1	0	0	0	1804	565	20	4	742	4	C15orf33	15	49833939	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	651083	49833939	52697453	1321	126022											
USP8	9101	broad.mit.edu	37	chr15	50789393	50789393	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctaaaaaagatagaaatctgGaagttaccacctgtgctttt	7	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50789393	A	A	50789393	4	1	145	1	0	0	0	0	0	1	0	0	17216	1183	41	4	3069	4	USP8	15	50789393	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	955454	50789393	51741999	1322	126023											
MYO5C	55930	broad.mit.edu	37	chr15	52517702	52517702	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctgtgcctgaagtagttCtatctctttttcgaactcag	7	10	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52517702	A	A	52517702	4	1	145	1	0	0	0	0	0	1	0	0	10174	922	32	3	2057	3	MYO5C	15	52517702	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1728309	52517702	50013690	1323	126024											
MYO5A	4644	broad.mit.edu	37	chr15	52645878	52645878	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaaaagttaaagttttaTattttaattgtcacattttt	6	2	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52645878	C	C	52645878	1	2	145	0	1	0	0	0	0	0	0	0	10172	1421	49	5		5	MYO5A	15	52645878	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	128176	52645878	49885514	1324	126025											
MYO5A	4644	broad.mit.edu	37	chr15	52646177	52646177	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctggagcttaaggaacaatGacatgtccagaggtaccttc	10	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52646177	C	C	52646177	4	2	145	1	0	0	0	0	0	1	0	0	10172	1294	45	4	2173	4	MYO5A	15	52646177	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	299	52646177	49885215	1325	126026											
WDR72	256764	broad.mit.edu	37	chr15	53997423	53997423	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagtccaggtggcagttacTggtatctctaaaaagaaaac	10	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53997423	A	A	53997423	2	1	145	1	0	0	0	0	0	0	0	1	17449	1567	55	5		5	WDR72	15	53997423	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	1351246	53997423	48533969	1326	126027											
CCPG1	9236	broad.mit.edu	37	chr15	55669161	55669161	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttaccagtttctggctgaCagaaagtatactggctgcta	9	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55669161	T	T	55669161	3	4	145	1	0	0	0	0	1	0	0	0	2968	478	17	4	1849	4	CCPG1	15	55669161	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1671738	55669161	46862231	1327	126028											
PRTG	283659	broad.mit.edu	37	chr15	55965661	55965661	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagtaatccgaaccaggTagacactgtcaggtttcagg	11	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55965661	C	C	55965661	3	2	145	1	0	0	0	0	1	0	0	0	12744	1638	57	5	1736	5	PRTG	15	55965661	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	296500	55965661	46565731	1328	126029											
GTF2A2	2958	broad.mit.edu	37	chr15	59944431	59944431	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagctcatctaggctctcctGaagactgtttcccaaagtag	9	11	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59944431	A	A	59944431	4	1	145	1	0	0	0	0	0	1	0	0	6919	1299	45	4	299	4	GTF2A2	15	59944431	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3978770	59944431	42586961	1329	126030											
RORA	6095	broad.mit.edu	37	chr15	60803663	60803663	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggtcgtcgtgaagttcCgtcagcccgttggccgagat	14	11	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60803663	A	A	60803663	2	1	145	1	0	0	0	0	0	0	0	1	13639	639	23	1		1	RORA	15	60803663	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	859232	60803663	41727729	1330	126031											
VPS13C	54832	broad.mit.edu	37	chr15	62250877	62250877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagagattttctgttagtatCctaaataaaagattaagatc	6	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62250877	A	A	62250877	3	1	145	1	0	0	0	0	1	0	0	0	17318	854	30	3	7390	3	VPS13C	15	62250877	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1447214	62250877	40280515	1331	126032											
MAP2K5	5607	broad.mit.edu	37	chr15	68065081	68065081	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaggccagcacctgaAgaattgatggtaagtgaatg	12	5	0	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68065081	G	G	68065081	2	3	145	1	0	0	0	0	0	0	0	1	9332	69	3	5		5	MAP2K5	15	68065081	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	5814204	68065081	34466311	1332	126033											
ITGA11	22801	broad.mit.edu	37	chr15	68661432	68661432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtagcaggaaggagtcaGtgtgaccatggacatgggcg	18	6	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68661432	T	T	68661432	1	4	145	0	1	0	0	0	0	0	0	0	7944	1044	36	3		3	ITGA11	15	68661432	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	596351	68661432	33869960	1333	126034											
LARP6	55323	broad.mit.edu	37	chr15	71125260	71125260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccttccattcttctgggGggtggccagagcccacagct	11	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71125260	T	T	71125260	3	4	145	1	0	0	0	0	1	0	0	0	8704	1232	43	2	872	2	LARP6	15	71125260	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2463828	71125260	31406132	1334	126035											
HCN4	10021	broad.mit.edu	37	chr15	73617522	73617522	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaccagcttccgacagttAaagttgatgatctcctgccg	9	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73617522	G	G	73617522	2	3	145	1	0	0	0	0	0	0	0	1	7065	359	13	5		5	HCN4	15	73617522	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	2492262	73617522	28913870	1335	126036											
ARID3B	10620	broad.mit.edu	37	chr15	74882171	74882171	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaaccacagggacccccatCaaccgaatccccatcatggc	6	18	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74882171	T	T	74882171	2	4	145	1	0	0	0	0	0	0	0	1	919	816	29	4		4	ARID3B	15	74882171	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1264649	74882171	27649221	1336	126037											
SIN3A	25942	broad.mit.edu	37	chr15	75664471	75664471	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtctctgctgccatttcaCggggcacatgctccttggtc	11	13	2	0	rs148486660		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75664471	T	T	75664471	3	4	145	1	0	0	0	0	1	0	0	0	14438	536	19	4	154	4	SIN3A	15	75664471	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	782300	75664471	26866921	1337	126038											
SNX33	257364	broad.mit.edu	37	chr15	75949596	75949596	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccttcccctgggcctggtCactgcagtgtaccccacttt	8	17	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75949596	G	G	75949596	1	3	145	0	1	0	0	0	0	0	0	0	15017	841	29	4		4	SNX33	15	75949596	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	285125	75949596	26581796	1338	126039											
AP3B2	8120	broad.mit.edu	37	chr15	83360726	83360726	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccttctgcacatcggcatAacagacatccccaacttctc	5	16	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83360726	T	T	83360726	1	4	145	0	1	0	0	0	0	0	0	0	747	377	13	5		5	AP3B2	15	83360726	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	7411130	83360726	19170666	1339	126040											
SLC28A1	9154	broad.mit.edu	37	chr15	85486875	85486875	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacccaaacaagatggccatAgaggccaggtgtggtggctc	14	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85486875	G	G	85486875	1	3	145	0	1	0	0	0	0	0	0	0	14645	435	15	5		5	SLC28A1	15	85486875	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2126149	85486875	17044517	1340	126041											
AKAP13	11214	broad.mit.edu	37	chr15	86265156	86265156	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttacaactagactggaaacAttttacaaaatggtattatg	6	5	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86265156	T	T	86265156	1	4	145	0	1	0	0	0	0	0	0	0	449	232	8	5		5	AKAP13	15	86265156	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	778281	86265156	16266236	1341	126042											
KLHL25	64410	broad.mit.edu	37	chr15	86312160	86312160	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggatgagtagcgtgtgGcccgccttgcgtggccgggc	17	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86312160	T	T	86312160	2	4	145	1	0	0	0	0	0	0	0	1	8451	1190	42	3		3	KLHL25	15	86312160	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	47004	86312160	16219232	1342	126043											
NTRK3	4916	broad.mit.edu	37	chr15	88680696	88680696	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatcagcgttgatgcagtaGaggttctggctgttgagctt	13	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88680696	A	A	88680696	2	1	145	1	0	0	0	0	0	0	0	1	10803	929	33	4		4	NTRK3	15	88680696	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2368536	88680696	13850696	1343	126044											
DET1	55070	broad.mit.edu	37	chr15	89056312	89056312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgtgtggttgatggggCggcccaataaccccgcctgg	15	12	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89056312	A	A	89056312	3	1	145	1	0	0	0	0	1	0	0	0	4490	768	27	3	133	3	DET1	15	89056312	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	375616	89056312	13475080	1344	126045											
ACAN	176	broad.mit.edu	37	chr15	89385009	89385009	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgggaaggctgctatggagAcaaggatgagtttcctggtg	16	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89385009	G	G	89385009	3	3	145	1	0	0	0	0	1	0	0	0	117	275	10	5	682	5	ACAN	15	89385009	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	328697	89385009	13146383	1345	126046											
ANPEP	290	broad.mit.edu	37	chr15	90341012	90341012	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagcccagccacagcctgGgaaccccaacccaggccctc	8	22	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90341012	A	A	90341012	1	1	145	0	1	0	0	0	0	0	0	0	710	1247	43	4		4	ANPEP	15	90341012	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	956003	90341012	12190380	1346	126047											
AP3S2	10239	broad.mit.edu	37	chr15	90451662	90451662	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctggggccaggcagacaGagagtgagggggcggcttca	18	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90451662	A	A	90451662	1	1	145	0	1	0	0	0	0	0	0	0	752	957	33	4		4	AP3S2	15	90451662	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	110650	90451662	12079730	1347	126048											
UNC45A	55898	broad.mit.edu	37	chr15	91486151	91486151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttgccagatcctgcccGggagctgaaggtcctcatca	12	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91486151	T	T	91486151	3	4	145	1	0	0	0	0	1	0	0	0	17114	1116	39	1	896	1	UNC45A	15	91486151	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1034489	91486151	11045241	1348	126049											
OR4F15	390649	broad.mit.edu	37	chr15	102358575	102358575	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactcccccatgtatttcctCctggctaacctctcaatcat	3	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102358575	A	A	102358575	2	1	145	1	0	0	0	0	0	0	0	1	11155	842	30	3		3	OR4F15	15	102358575	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	10872424	102358575	172817	1349	126050											
MSLNL	401827	broad.mit.edu	37	chr16	823175	823175	+	Frame_Shift_Del	DEL	A	-	-													gctggcactcagtgggcagcAggtgctgcaacagggtgtcc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	823175	-	-	823175	7	5	145	1	0	1	0	1	0	0	0	0	9976	188	7	0	1096	0	MSLNL	16	823175	Frame_Shift_Del	DEL	A	TCGA-49-6743-01A-11D-1855-08		823175	89531578	1350	126051											
CACNA1H	8912	broad.mit.edu	37	chr16	1254481	1254481	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggctggcctggccacggGgtgggctccctgtcaggctt	18	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1254481	A	A	1254481	1	1	145	0	1	0	0	0	0	0	0	0	2571	1247	43	4		4	CACNA1H	16	1254481	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	431306	1254481	89100272	1351	126052											
C16orf91	283951	broad.mit.edu	37	chr16	1476238	1476239	+	Frame_Shift_Ins	INS	-	A	A													ctcatcctggtgtgcagcccINSaggggggcttcctgaaggag							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1476239	A	A	1476238	7	5	145	1	0	1	1	0	0	0	0	0	1858	594	21	0	695	0	C16orf91	16	1476238	Frame_Shift_Ins	INS	-	TCGA-49-6743-01A-11D-1855-08	221757	1476238	88878515	1352	126053											
HN1L	90861	broad.mit.edu	37	chr16	1749019	1749019	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagccactgctccaccCggagccagaccagaaactca	9	15	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1749019	A	A	1749019	1	1	145	0	1	0	0	0	0	0	0	0	7317	667	23	1		1	HN1L	16	1749019	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	272781	1749019	88605734	1353	126054											
KCTD5	54442	broad.mit.edu	37	chr16	2752407	2752408	+	Frame_Shift_Del	DEL	CC	-	-													aacgaagaccaagccgagttCctctgtgtggtgtccaagga							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2752408	-	-	2752407	7	5	145	1	0	1	0	1	0	0	0	0	8182	854	30	0	621	0	KCTD5	16	2752407	Frame_Shift_Del	DEL	CC	TCGA-49-6743-01A-11D-1855-08	1003388	2752407	87602346	1354	126055											
SRL	6345	broad.mit.edu	37	chr16	4247930	4247930	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctccatctgtgggcaacagGaagtagaaatggaataaaac	10	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4247930	C	C	4247930	1	2	145	0	1	0	0	0	0	0	0	0	15268	1189	41	4		4	SRL	16	4247930	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1495523	4247930	86106823	1355	126056											
CORO7	79585	broad.mit.edu	37	chr16	4408220	4408220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaccagcctggggcttcCatgagtttcagcatctcagc	9	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4408220	A	A	4408220	1	1	145	0	1	0	0	0	0	0	0	0	3791	609	21	2		2	CORO7	16	4408220	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	160290	4408220	85946533	1356	126057											
GLYR1	84656	broad.mit.edu	37	chr16	4867586	4867586	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatccaacaggcaccaccCctgaatgcttactttctctg	6	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4867586	A	A	4867586	1	1	145	0	1	0	0	0	0	0	0	0	6547	638	22	2		2	GLYR1	16	4867586	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	459366	4867586	85487167	1357	126058											
GRIN2A	2903	broad.mit.edu	37	chr16	9927801	9927801	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtcaggctggttctgaactCctgacctcatgatccaccca	9	14	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9927801	A	A	9927801	1	1	145	0	1	0	0	0	0	0	0	0	6845	870	30	3		3	GRIN2A	16	9927801	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5060215	9927801	80426952	1358	126059											
SNX29	92017	broad.mit.edu	37	chr16	12220441	12220441	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaggtgagggcatgctgTaacaggcaagacctgccaat	14	8	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12220441	C	C	12220441	1	2	145	0	1	0	0	0	0	0	0	0	15012	1653	57	5		5	SNX29	16	12220441	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	2292640	12220441	78134312	1359	126060											
ERCC4	2072	broad.mit.edu	37	chr16	14013918	14013918	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcggctacgttcggctgGctgccgtcctctcggactcg	12	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14013918	T	T	14013918	1	4	145	0	1	0	0	0	0	0	0	0	5257	1218	42	3		3	ERCC4	16	14013918	5'Flank	SNP	G	TCGA-49-6743-01A-11D-1855-08	1793477	14013918	76340835	1360	126061											
BFAR	51283	broad.mit.edu	37	chr16	14743569	14743569	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcatcattccctgtgagctCagcctcttcctttccccacc	5	19	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14743569	A	A	14743569	1	1	145	0	1	0	0	0	0	0	0	0	1420	841	29	3		3	BFAR	16	14743569	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	729651	14743569	75611184	1361	126062											
RRN3	54700	broad.mit.edu	37	chr16	15157044	15157044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtgtgctcaatcaatcaCaaactgacctttttcatggg	8	9	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15157044	A	A	15157044	1	1	145	0	1	0	0	0	0	0	0	0	13795	493	17	3		3	RRN3	16	15157044	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	413475	15157044	75197709	1362	126063											
NOMO3	408050	broad.mit.edu	37	chr16	16346086	16346089	+	Intron	DEL	ACTT	-	-													gaacatgctgttaagcagtaActtacttaagatgagacact							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16346089	-	-	16346086	6	5	145	0	1	1	0	1	0	0	0	0	10628	58	2	0		0	NOMO3	16	16346086	Intron	DEL	ACTT	TCGA-49-6743-01A-11D-1855-08	1189042	16346086	74008667	1363	126064											
ACSM2A	123876	broad.mit.edu	37	chr16	20488865	20488865	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttattgagtcaaaaataataGaaagtactgatattaagata	6	2	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20488865	A	A	20488865	1	1	145	0	1	0	0	0	0	0	0	0	183	957	33	4		4	ACSM2A	16	20488865	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4142779	20488865	69865888	1364	126065											
PALB2	79728	broad.mit.edu	37	chr16	23641470	23641470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggtcctcttctaagtcctCcatttctgtatccatgcgtt	6	12	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23641470	T	T	23641470	3	4	145	1	0	0	0	0	1	0	0	0	11500	864	30	4	1591	4	PALB2	16	23641470	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3152605	23641470	66713283	1365	126066											
RBBP6	5930	broad.mit.edu	37	chr16	24574667	24574667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttacagcagggttttGtttttctggctttgttctta	8	5	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24574667	T	T	24574667	1	4	145	0	1	0	0	0	0	0	0	0	13211	1392	48	3		3	RBBP6	16	24574667	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	933197	24574667	65780086	1366	126067											
AQP8	343	broad.mit.edu	37	chr16	25228443	25228443	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggggctgtgaattaattcAaggttgggggtcggggcctt	19	5	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25228443	G	G	25228443	1	3	145	0	1	0	0	0	0	0	0	0	834	145	5	5		5	AQP8	16	25228443	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	653776	25228443	65126310	1367	126068											
XPO6	23214	broad.mit.edu	37	chr16	28117828	28117828	+	Intron	DEL	G	-	-													atcagtcacatctgaggaaaGgggcagagatatcgtcagag							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28117828	-	-	28117828	6	5	145	0	1	1	0	1	0	0	0	0	17575	1015	35	0		0	XPO6	16	28117828	Intron	DEL	G	TCGA-49-6743-01A-11D-1855-08	2889385	28117828	62236925	1368	126069											
APOB48R	55911	broad.mit.edu	37	chr16	28508881	28508881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggaccttggggagggcGggtagaggccgaggaatctg	22	6	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28508881	T	T	28508881	3	4	145	1	0	0	0	0	1	0	0	0	788	1116	39	1	2502	1	APOB48R	16	28508881	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	391053	28508881	61845872	1369	126070											
MVP	9961	broad.mit.edu	37	chr16	29845114	29845114	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccatctaaaggcgctgcttGattttgaggataaagatgga	11	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29845114	C	C	29845114	3	2	145	1	0	0	0	0	1	0	0	0	10090	1290	45	4	392	4	MVP	16	29845114	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1336233	29845114	60509639	1370	126071											
ITGAL	3683	broad.mit.edu	37	chr16	30516760	30516760	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaagtgtgaggcaaacttGagagtgtccttctctcctgc	11	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30516760	A	A	30516760	2	1	145	1	0	0	0	0	0	0	0	1	7956	1281	45	4		4	ITGAL	16	30516760	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	671646	30516760	59837993	1371	126072											
ITGAM	3684	broad.mit.edu	37	chr16	31332815	31332815	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtactgagagtcaaggcaatCatggagttcaatcccaggga	12	8	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31332815	A	A	31332815	2	1	145	1	0	0	0	0	0	0	0	1	7957	816	29	3		3	ITGAM	16	31332815	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	816055	31332815	59021938	1372	126073											
C16orf78	123970	broad.mit.edu	37	chr16	49411618	49411618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacagcagtggctgcagGgctctcttcccttgtctttt	9	15	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49411618	T	T	49411618	1	4	145	0	1	0	0	0	0	0	0	0	1849	1247	43	2		2	C16orf78	16	49411618	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	18078803	49411618	40943135	1373	126074											
IRX6	79190	broad.mit.edu	37	chr16	55360216	55360216	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggtggggggggggtctctGacctccagtgccctctttct	17	11	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55360216	A	A	55360216	1	1	145	0	1	0	0	0	0	0	0	0	7918	1305	45	4		4	IRX6	16	55360216	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	5948598	55360216	34994537	1374	126075											
IRX6	79190	broad.mit.edu	37	chr16	55362640	55362640	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagccaggaggcccggggGctccggctgagtgacctgga	18	12	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55362640	T	T	55362640	2	4	145	1	0	0	0	0	0	0	0	1	7918	1190	42	3		3	IRX6	16	55362640	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2424	55362640	34992113	1375	126076											
CES7	221223	broad.mit.edu	37	chr16	55883456	55883456	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtaattaaatgccaacccCgaagtcctccaggcgcttgc	9	13	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55883456	T	T	55883456	1	4	145	0	1	0	0	0	0	0	0	0	3302	667	23	4		4	CES7	16	55883456	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	520816	55883456	34471297	1376	126077											
CDH11	1009	broad.mit.edu	37	chr16	64981653	64981653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggacccggccactgagccCctgccttcataaccgtagat	10	15	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64981653	A	A	64981653	3	1	145	1	0	0	0	0	1	0	0	0	3127	622	22	2	150	2	CDH11	16	64981653	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	9098197	64981653	25373100	1377	126078											
CDH11	1009	broad.mit.edu	37	chr16	65016163	65016163	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgcacgttggctgcctcTaccttcaagctataggctct	9	12	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65016163	A	A	65016163	2	1	145	1	0	0	0	0	0	0	0	1	3127	1509	53	5		5	CDH11	16	65016163	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	34510	65016163	25338590	1378	126079											
SLC9A5	6553	broad.mit.edu	37	chr16	67291058	67291058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagggagagggttgggcaGgccctgggggagtcttggag	23	5	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67291058	T	T	67291058	1	4	145	0	1	0	0	0	0	0	0	0	14831	1015	35	2		2	SLC9A5	16	67291058	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2274895	67291058	23063695	1379	126080											
TERF2	7014	broad.mit.edu	37	chr16	69391533	69391533	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaccacaagaaaaagacAtggaatgtccccaaagggaa	8	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69391533	G	G	69391533	1	3	145	0	1	0	0	0	0	0	0	0	15884	232	8	5		5	TERF2	16	69391533	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	2100475	69391533	20963220	1380	126081											
VAC14	55697	broad.mit.edu	37	chr16	70818814	70818814	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagaccagggatttcctGcaaatccgcagccgaggcct	11	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70818814	A	A	70818814	1	1	145	0	1	0	0	0	0	0	0	0	17238	1334	46	4		4	VAC14	16	70818814	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1427281	70818814	19535939	1381	126082											
HYDIN	54768	broad.mit.edu	37	chr16	71163573	71163573	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagtgaaaacgttattgaaGaacagcttgctgtctccctg	9	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71163573	C	C	71163573	3	2	145	1	0	0	0	0	1	0	0	0	7537	933	33	4	14489	4	HYDIN	16	71163573	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	344759	71163573	19191180	1382	126083											
PSMD7	5713	broad.mit.edu	37	chr16	74338073	74338073	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagccttacccacccttgccAtagaaaattctcagtcatgc	5	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74338073	T	T	74338073	1	4	145	0	1	0	0	0	0	0	0	0	12809	232	8	5		5	PSMD7	16	74338073	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3174500	74338073	16016680	1383	126084											
PLCG2	5336	broad.mit.edu	37	chr16	81969915	81969915	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggacaaagagttgactcttCaaactacgaccccttccgcc	8	14	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81969915	T	T	81969915	3	4	145	1	0	0	0	0	1	0	0	0	12131	838	29	4	3086	4	PLCG2	16	81969915	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	7631842	81969915	8384838	1384	126085											
IRF8	3394	broad.mit.edu	37	chr16	85946793	85946794	+	Missense_Mutation	DNP	CT	TA	TA													agcccttccccgccggaggcCtgtcggagtcagctccttcc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	85946794	TA	TA	85946793	3	4	145	1	0	0	0	0	1	0	0	0	7906	668	24	4	518	4	IRF8	16	85946793	Missense_Mutation	DNP	CT	TCGA-49-6743-01A-11D-1855-08	3976878	85946793	4407960	1385	126086											
ANKRD11	29123	broad.mit.edu	37	chr16	89346599	89346599	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcgtccgcccagggcacCggctccacctggccgaggtg	15	16	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89346599	A	A	89346599	2	1	145	1	0	0	0	0	0	0	0	1	639	639	23	1		1	ANKRD11	16	89346599	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	3399806	89346599	1008154	1386	126087											
ANKRD11	29123	broad.mit.edu	37	chr16	89351264	89351264	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggagtctgataaagaactGacctctgaccaagccgggga	13	9	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89351264	C	C	89351264	2	2	145	1	0	0	0	0	0	0	0	1	639	1277	45	4		4	ANKRD11	16	89351264	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	4665	89351264	1003489	1387	126088											
PRPF8	10594	broad.mit.edu	37	chr17	1563585	1563585	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctctacagtaccctctcCccacgattccacctgagctg	5	18	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1563585	T	T	1563585	1	4	145	0	1	0	0	0	0	0	0	0	12681	638	22	4		4	PRPF8	17	1563585	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08		1563585	79631625	1388	126089											
SMG6	23293	broad.mit.edu	37	chr17	2195827	2195827	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaaagcacttttccccTgtccacaggatttcttaccg	6	15	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2195827	A	A	2195827	1	1	145	0	1	0	0	0	0	0	0	0	14911	1595	55	5		5	SMG6	17	2195827	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	632242	2195827	78999383	1389	126090											
ITGAE	3682	broad.mit.edu	37	chr17	3663533	3663533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggctctctgaaagtctGggggatcaatgcttcctgag	12	9	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3663533	A	A	3663533	3	1	145	1	0	0	0	0	1	0	0	0	7955	1348	47	4	2992	4	ITGAE	17	3663533	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1467706	3663533	77531677	1390	126091											
DNAH2	146754	broad.mit.edu	37	chr17	7662497	7662498	+	Intron	DNP	CC	AA	AA													aaaaccacagtcccccagttCcatcaggccattctcttgct							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	7662498	AA	AA	7662497	1	1	145	0	1	0	0	0	0	0	0	0	4642	870	30	3		3	DNAH2	17	7662497	Intron	DNP	CC	TCGA-49-6743-01A-11D-1855-08	3998964	7662497	73532713	1391	126092											
CNTROB	116840	broad.mit.edu	37	chr17	7838529	7838529	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggacccaagtgttgaaaAgggctgagggggcctggcgt	19	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7838529	G	G	7838529	1	3	145	0	1	0	0	0	0	0	0	0	3683	87	3	5		5	CNTROB	17	7838529	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	176032	7838529	73356681	1392	126093											
NDEL1	81565	broad.mit.edu	37	chr17	8363341	8363341	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaggctttagaatccaaAttagcagcttgcaggaattt	9	6	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8363341	T	T	8363341	3	4	145	1	0	0	0	0	1	0	0	0	10339	98	4	5	833	5	NDEL1	17	8363341	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	524812	8363341	72831869	1393	126094											
GAS7	8522	broad.mit.edu	37	chr17	9846526	9846526	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaacccagccacggtgcCgttgccttgggggtccttct	11	14	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9846526	T	T	9846526	3	4	145	1	0	0	0	0	1	0	0	0	6312	652	23	4	819	4	GAS7	17	9846526	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1483185	9846526	71348684	1394	126095											
GAS7	8522	broad.mit.edu	37	chr17	9939766	9939766	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaccatcagagaacagctAaccttctctgggggctgcta	9	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9939766	G	G	9939766	1	3	145	0	1	0	0	0	0	0	0	0	6312	377	13	5		5	GAS7	17	9939766	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	93240	9939766	71255444	1395	126096											
MYH1	4619	broad.mit.edu	37	chr17	10415871	10415871	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcaatggcactctaccatGagagatgagaagacaaagat	9	7	2	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10415871	A	A	10415871	1	1	145	0	1	0	0	0	0	0	0	0	10123	1305	45	4		4	MYH1	17	10415871	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	476105	10415871	70779339	1396	126097											
TRIM16	10626	broad.mit.edu	37	chr17	15554713	15554713	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacaggacctctttcccctCaccagcaggatccccctgct	6	19	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15554713	T	T	15554713	3	4	145	1	0	0	0	0	1	0	0	0	16615	835	29	4	1507	4	TRIM16	17	15554713	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5138842	15554713	65640497	1397	126098											
TBC1D26	353149	broad.mit.edu	37	chr17	15641499	15641499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagtgggtgggtggtacCccatccttgccataggactg	13	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15641499	A	A	15641499	1	1	145	0	1	0	0	0	0	0	0	0	15735	638	22	2		2	TBC1D26	17	15641499	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	86786	15641499	65553711	1398	126099											
NCOR1	9611	broad.mit.edu	37	chr17	16055348	16055348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatttatgtataaaatgtTgtacatatgtctatgaagag	7	2	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16055348	A	A	16055348	1	1	145	0	1	0	0	0	0	0	0	0	10330	1827	63	5		5	NCOR1	17	16055348	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	413849	16055348	65139862	1399	126100											
LGALS9	3965	broad.mit.edu	37	chr17	25967533	25967533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagcacaggcgccgaggcCctcctgtgcctgtcactggc	12	16	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25967533	A	A	25967533	1	1	145	0	1	0	0	0	0	0	0	0	8820	638	22	2		2	LGALS9	17	25967533	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	9912185	25967533	55227677	1400	126101											
NOS2	4843	broad.mit.edu	37	chr17	26091019	26091019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttcacctggcacagggcCtccagcctctgtctctcagg	9	16	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26091019	A	A	26091019	3	1	145	1	0	0	0	0	1	0	0	0	10638	680	24	2	909	2	NOS2	17	26091019	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	123486	26091019	55104191	1401	126102											
SLC13A2	9058	broad.mit.edu	37	chr17	26816185	26816185	+	Intron	DEL	G	-	-													acaggaggtggcatagctctGggacacaggccctctgacag							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26816185	-	-	26816185	6	5	145	0	1	1	0	1	0	0	0	0	14505	1363	47	0		0	SLC13A2	17	26816185	Intron	DEL	G	TCGA-49-6743-01A-11D-1855-08	725166	26816185	54379025	1402	126103											
SUPT6H	6830	broad.mit.edu	37	chr17	27009701	27009701	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaaagccaagaggtttatCagcctatctgctgccttacc	8	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27009701	T	T	27009701	1	4	145	0	1	0	0	0	0	0	0	0	15518	841	29	4		4	SUPT6H	17	27009701	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	193516	27009701	54185509	1403	126104											
SUPT6H	6830	broad.mit.edu	37	chr17	27010556	27010556	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagttgagcaggctgttgtCtctggcttgcttagaatgtt	13	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27010556	T	T	27010556	1	4	145	0	1	0	0	0	0	0	0	0	15518	928	32	4		4	SUPT6H	17	27010556	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	855	27010556	54184654	1404	126105											
SUPT6H	6830	broad.mit.edu	37	chr17	27011621	27011621	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggcctgtagtcgaaagctCtacaattggttgagagtggc	13	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27011621	G	G	27011621	2	3	145	1	0	0	0	0	0	0	0	1	15518	900	32	4		4	SUPT6H	17	27011621	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1065	27011621	54183589	1405	126106											
MYO18A	399687	broad.mit.edu	37	chr17	27425944	27425944	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtccttcacccctttgttcTtcttgatgttcttctgtaca	5	12	5	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27425944	A	A	27425944	3	1	145	1	0	0	0	0	1	0	0	0	10159	1609	56	5	2564	5	MYO18A	17	27425944	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	414323	27425944	53769266	1406	126107											
SSH2	85464	broad.mit.edu	37	chr17	27959179	27959179	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcacagtcctcagatccttCaggactccttcctgctgtgt	7	14	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27959179	T	T	27959179	2	4	145	1	0	0	0	0	0	0	0	1	15303	813	29	4		4	SSH2	17	27959179	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	533235	27959179	53236031	1407	126108											
GOSR1	9527	broad.mit.edu	37	chr17	28837893	28837893	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaatttttctttttattTgcagctcagatcgtctgata	6	6	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28837893	G	G	28837893	1	3	145	0	1	0	0	0	0	0	0	0	6641	1827	63	5		5	GOSR1	17	28837893	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	878714	28837893	52357317	1408	126109											
ATAD5	79915	broad.mit.edu	37	chr17	29171765	29171766	+	Intron	INS	-	AAAAA	AAAAA													acagagtgagactccatctcINSaaaaaaaaaaaaaaaaaaaa					rs66504576		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAAAA	29171766	AAAAA	AAAAA	29171765	6	5	145	0	1	1	1	0	0	0	0	0	1080	841	29	0		0	ATAD5	17	29171765	Intron	INS	-	TCGA-49-6743-01A-11D-1855-08	333872	29171765	52023445	1409	126110											
RAD51L3	5892	broad.mit.edu	37	chr17	33433248	33433248	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacaatgaggtatgtgattTaggtgctcgggaattccatc	11	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33433248	A	A	33433248	1	1	145	0	1	0	0	0	0	0	0	0	13098	1769	61	5		5	RAD51L3	17	33433248	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4261483	33433248	47761962	1410	126111											
UNC45B	146862	broad.mit.edu	37	chr17	33482328	33482328	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctaggccacagtgattcTgcatgcagtgcggatagacc	12	10	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33482328	A	A	33482328	3	1	145	1	0	0	0	0	1	0	0	0	17115	1580	55	5	675	5	UNC45B	17	33482328	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	49080	33482328	47712882	1411	126112											
ACACA	31	broad.mit.edu	37	chr17	35470206	35470206	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttggtcgtacatatctatgGagaatgagacaaattagaaa	9	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35470206	A	A	35470206	1	1	145	0	1	0	0	0	0	0	0	0	106	1189	41	4		4	ACACA	17	35470206	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1987878	35470206	45725004	1412	126113											
ACACA	31	broad.mit.edu	37	chr17	35608975	35608975	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagacgctattccgcaggctCacatctgccacgtggagggc	13	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35608975	T	T	35608975	2	4	145	1	0	0	0	0	0	0	0	1	106	813	29	4		4	ACACA	17	35608975	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	138769	35608975	45586235	1413	126114											
ACACA	31	broad.mit.edu	37	chr17	35640137	35640137	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttccatgttttagttttgaGagtgatgctttcataatgct	9	5	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35640137	C	C	35640137	1	2	145	0	1	0	0	0	0	0	0	0	106	957	33	4		4	ACACA	17	35640137	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	31162	35640137	45555073	1414	126115											
MLLT6	4302	broad.mit.edu	37	chr17	36873657	36873657	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtggagagtaaccacGtgcttccctctgtccttgtg	13	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36873657	A	A	36873657	1	1	145	0	1	0	0	0	0	0	0	0	9723	1160	40	4		4	MLLT6	17	36873657	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1233520	36873657	44321553	1415	126116											
PLXDC1	57125	broad.mit.edu	37	chr17	37226093	37226093	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagacaggagccctgtggcCacagatgacacggacctcga	13	13	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37226093	G	G	37226093	1	3	145	0	1	0	0	0	0	0	0	0	12212	609	21	4		4	PLXDC1	17	37226093	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	352436	37226093	43969117	1416	126117											
CACNB1	782	broad.mit.edu	37	chr17	37341033	37341033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactcccctctaggaagtcCtacctcgtagcccttgagcg	8	17	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37341033	A	A	37341033	1	1	145	0	1	0	0	0	0	0	0	0	2578	696	24	2		2	CACNB1	17	37341033	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	114940	37341033	43854177	1417	126118											
CDC6	990	broad.mit.edu	37	chr17	38450769	38450769	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatcaggtcagtgccaactAttttgccaaattatgtgttc	7	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38450769	G	G	38450769	1	3	145	0	1	0	0	0	0	0	0	0	3113	464	16	5		5	CDC6	17	38450769	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1109736	38450769	42744441	1418	126119											
SMARCE1	6605	broad.mit.edu	37	chr17	38787752	38787752	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttcaaagtgaacaacaTtcaataaaaacactattttg	4	7	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38787752	G	G	38787752	1	3	145	0	1	0	0	0	0	0	0	0	14894	1508	52	5		5	SMARCE1	17	38787752	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	336983	38787752	42407458	1419	126120											
KRT28	162605	broad.mit.edu	37	chr17	38953472	38953472	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaccgcgaggtctacccccGgggccgcgttcatctccacg	11	17	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38953472	A	A	38953472	3	1	145	1	0	0	0	0	1	0	0	0	8536	1116	39	4	662	4	KRT28	17	38953472	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	165720	38953472	42241738	1420	126121											
KRT39	390792	broad.mit.edu	37	chr17	39122621	39122621	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taattcacaacacgattaaaCaggttcttaggaatcttacc	5	9	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39122621	G	G	39122621	1	3	145	0	1	0	0	0	0	0	0	0	8547	493	17	4		4	KRT39	17	39122621	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	169149	39122621	42072589	1421	126122											
KRTAP1-5	83895	broad.mit.edu	37	chr17	39186230	39186230	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccacagccggttccgcagGagctggtctggcagcagctt	14	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39186230	A	A	39186230	1	1	145	0	1	0	0	0	0	0	0	0	8575	1189	41	4		4	KRTAP1-5	17	39186230	5'Flank	SNP	G	TCGA-49-6743-01A-11D-1855-08	63609	39186230	42008980	1422	126123											
KRTAP9-9	81870	broad.mit.edu	37	chr17	39405902	39405902	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaggtgtataaaaggtccAgattgcaaggggtcatcaga	13	7	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39405902	C	C	39405902	1	2	145	0	1	0	0	0	0	0	0	0	8649	203	7	5		5	KRTAP9-9	17	39405902	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	219672	39405902	41789308	1423	126124											
KRTAP9-9	81870	broad.mit.edu	37	chr17	39411549	39411549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtggaaactttggaagcCaggtgtataaaaggtccaga	13	5	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39411549	A	A	39411549	1	1	145	0	1	0	0	0	0	0	0	0	8649	609	21	2		2	KRTAP9-9	17	39411549	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5647	39411549	41783661	1424	126125											
JUP	3728	broad.mit.edu	37	chr17	39766349	39766349	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactccagggcagggagaagGgagggctgggagctctgagg	21	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39766349	A	A	39766349	1	1	145	0	1	0	0	0	0	0	0	0	8042	1247	43	4		4	JUP	17	39766349	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	354800	39766349	41428861	1425	126126											
RAB5C	5878	broad.mit.edu	37	chr17	40282492	40282492	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccagcagctggtccattgGgtcgtgctgcgcctccccga	12	16	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40282492	A	A	40282492	3	1	145	1	0	0	0	0	1	0	0	0	13058	1232	43	4	641	4	RAB5C	17	40282492	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	516143	40282492	40912718	1426	126127											
C17orf104	284071	broad.mit.edu	37	chr17	42745463	42745463	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaatatgatgtatggtgaTaattctttttctggtctcat	7	4	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42745463	C	C	42745463	2	2	145	1	0	0	0	0	0	0	0	1	1865	1403	49	5		5	C17orf104	17	42745463	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	2462971	42745463	38449747	1427	126128											
IMP5	162540	broad.mit.edu	37	chr17	43923548	43923548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcccatggtactcaaaGtgccccggctaagagtctcc	11	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43923548	A	A	43923548	3	1	145	1	0	0	0	0	1	0	0	0	7791	1029	36	4	1278	4	IMP5	17	43923548	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1178085	43923548	37271662	1428	126129											
TBKBP1	9755	broad.mit.edu	37	chr17	45776993	45776993	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctctgacctcttcatcttCttccttaggatctggcctcc	7	15	6	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45776993	T	T	45776993	1	4	145	0	1	0	0	0	0	0	0	0	15760	928	32	4		4	TBKBP1	17	45776993	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1853445	45776993	35418217	1429	126130											
TBX21	30009	broad.mit.edu	37	chr17	45822274	45822274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaggatgtggttccccagGcttactggctgggggccccc	15	13	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45822274	T	T	45822274	3	4	145	1	0	0	0	0	1	0	0	0	15779	1203	42	3	1172	3	TBX21	17	45822274	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	45281	45822274	35372936	1430	126131											
SCRN2	90507	broad.mit.edu	37	chr17	45917699	45917699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacggctcagaatcacagCgtgcgtcttcgacacctgtt	11	12	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45917699	A	A	45917699	3	1	145	1	0	0	0	0	1	0	0	0	14052	768	27	3	1105	3	SCRN2	17	45917699	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	95425	45917699	35277511	1431	126132											
SKAP1	8631	broad.mit.edu	37	chr17	46289057	46289057	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaattcatttatccaggctGagcctgatgaaatcaagggg	10	7	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46289057	T	T	46289057	1	4	145	0	1	0	0	0	0	0	0	0	14468	1305	45	3		3	SKAP1	17	46289057	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	371358	46289057	34906153	1432	126133											
HOXB6	3216	broad.mit.edu	37	chr17	46673820	46673820	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcggcactgagctgagaCgcgctgagcagtttgctctc	12	13	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46673820	A	A	46673820	2	1	145	1	0	0	0	0	0	0	0	1	7372	523	19	3		3	HOXB6	17	46673820	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	384763	46673820	34521390	1433	126134											
HOXB8	3218	broad.mit.edu	37	chr17	46691845	46691845	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccgtggcacgccacggcGcacgggttctgctggtaggg	16	14	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46691845	A	A	46691845	2	1	145	1	0	0	0	0	0	0	0	1	7374	1079	38	4		4	HOXB8	17	46691845	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	18025	46691845	34503365	1434	126135											
HOXB13	10481	broad.mit.edu	37	chr17	46805973	46805973	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catggagccgagggtcggctCatgaggtgcgggggcgggga	22	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46805973	A	A	46805973	1	1	145	0	1	0	0	0	0	0	0	0	7367	841	29	3		3	HOXB13	17	46805973	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	114128	46805973	34389237	1435	126136											
TTLL6	284076	broad.mit.edu	37	chr17	46846928	46846928	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatcagactagagacttcCtaatggtatggactgtgtct	9	9	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46846928	T	T	46846928	1	4	145	0	1	0	0	0	0	0	0	0	16857	696	24	4		4	TTLL6	17	46846928	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	40955	46846928	34348282	1436	126137											
GIP	2695	broad.mit.edu	37	chr17	47041652	47041652	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccggcacagggaacaggagGagtgtaagcagcgactcact	14	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47041652	A	A	47041652	1	1	145	0	1	0	0	0	0	0	0	0	6455	1189	41	4		4	GIP	17	47041652	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	194724	47041652	34153558	1437	126138											
NGFR	4804	broad.mit.edu	37	chr17	47583600	47583600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggggagggagagactccaGctcctgcgtcccgggtgccc	16	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47583600	A	A	47583600	1	1	145	0	1	0	0	0	0	0	0	0	10491	986	34	4		4	NGFR	17	47583600	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	541948	47583600	33611610	1438	126139											
SAMD14	201191	broad.mit.edu	37	chr17	48193090	48193091	+	Intron	DNP	GC	AA	AA													gacccctccactgactccctGcagagagagtgtccagcatg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	48193091	AA	AA	48193090	1	1	145	0	1	0	0	0	0	0	0	0	13930	1334	46	4		4	SAMD14	17	48193090	Intron	DNP	GC	TCGA-49-6743-01A-11D-1855-08	609490	48193090	33002120	1439	126140											
ABCC3	8714	broad.mit.edu	37	chr17	48741471	48741471	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcgatctacttcctctggcAggtgactctccaaccctgac	9	15	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48741471	T	T	48741471	3	4	145	1	0	0	0	0	1	0	0	0	54	202	7	5	1375	5	ABCC3	17	48741471	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	548381	48741471	32453739	1440	126141											
ABCC3	8714	broad.mit.edu	37	chr17	48753229	48753229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgtccctgactgccatGgctgctccctacaggtggag	11	16	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48753229	T	T	48753229	1	4	145	0	1	0	0	0	0	0	0	0	54	1363	47	2		2	ABCC3	17	48753229	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	11758	48753229	32441981	1441	126142											
WFIKKN2	124857	broad.mit.edu	37	chr17	48917894	48917894	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccagtgccagtcctttgtCtatggtggctgcgagggcaa	15	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48917894	T	T	48917894	2	4	145	1	0	0	0	0	0	0	0	1	17486	900	32	4		4	WFIKKN2	17	48917894	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	164665	48917894	32277316	1442	126143											
STXBP4	252983	broad.mit.edu	37	chr17	53150368	53150368	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatggactatgaagaagtGatccgtctgttagaggccaa	12	6	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53150368	T	T	53150368	2	4	145	1	0	0	0	0	0	0	0	1	15473	1277	45	3		3	STXBP4	17	53150368	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	4232474	53150368	28044842	1443	126144											
DGKE	8526	broad.mit.edu	37	chr17	54912335	54912335	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcttccgcaagagcaagcAcgggtggcgcgacacggacc	13	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54912335	T	T	54912335	3	4	145	1	0	0	0	0	1	0	0	0	4508	159	6	5	181	5	DGKE	17	54912335	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1761967	54912335	26282875	1444	126145											
MKS1	54903	broad.mit.edu	37	chr17	56288035	56288035	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttacgagcagttggcaattCtacaaagaagtggacgtaga	11	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56288035	T	T	56288035	3	4	145	1	0	0	0	0	1	0	0	0	9702	922	32	4	702	4	MKS1	17	56288035	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1375700	56288035	24907175	1445	126146											
LPO	4025	broad.mit.edu	37	chr17	56332366	56332366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcactgtcacctggtccCacctggctcccactcctggc	10	18	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56332366	A	A	56332366	1	1	145	0	1	0	0	0	0	0	0	0	9009	609	21	2		2	LPO	17	56332366	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	44331	56332366	24862844	1446	126147											
TRIM37	4591	broad.mit.edu	37	chr17	57168627	57168627	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattctgatcttactattttCaaaattcacaaataatcgta	2	8	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57168627	G	G	57168627	1	3	145	0	1	0	0	0	0	0	0	0	16635	841	29	4		4	TRIM37	17	57168627	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	836261	57168627	24026583	1447	126148											
TBX4	9496	broad.mit.edu	37	chr17	59560493	59560493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctccgctgagctgtaaCatgtggacttcagtgtcgcc	10	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59560493	A	A	59560493	3	1	145	1	0	0	0	0	1	0	0	0	15782	477	17	3	1284	3	TBX4	17	59560493	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2391866	59560493	21634717	1448	126149											
MED13	9969	broad.mit.edu	37	chr17	60039226	60039226	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaactctaaaaacttttTactagaaaatttacacaaaa	1	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60039226	G	G	60039226	1	3	145	0	1	0	0	0	0	0	0	0	9523	1769	61	5		5	MED13	17	60039226	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	478733	60039226	21155984	1449	126150											
KCNH6	81033	broad.mit.edu	37	chr17	61611612	61611612	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacttcaagggctggttcctCattgacatggtggccgccat	11	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61611612	G	G	61611612	2	3	145	1	0	0	0	0	0	0	0	1	8106	813	29	4		4	KCNH6	17	61611612	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1572386	61611612	19583598	1450	126151											
GH1	2688	broad.mit.edu	37	chr17	61994884	61994884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctgcaaagtgaaggaagAgaaggagaggccaagcgctt	14	8	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61994884	G	G	61994884	1	3	145	0	1	0	0	0	0	0	0	0	6431	319	11	5		5	GH1	17	61994884	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	383272	61994884	19200326	1451	126152											
ABCA9	10350	broad.mit.edu	37	chr17	66991914	66991914	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggcaagagaactgactttCcaaagacagagacttttaaa	9	7	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66991914	T	T	66991914	1	4	145	0	1	0	0	0	0	0	0	0	39	870	30	4		4	ABCA9	17	66991914	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4997030	66991914	14203296	1452	126153											
ABCA10	10349	broad.mit.edu	37	chr17	67197798	67197798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataatggagaatccccatGgccatctttatctaattaat	5	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67197798	T	T	67197798	3	4	145	1	0	0	0	0	1	0	0	0	29	1348	47	2	3733	2	ABCA10	17	67197798	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	205884	67197798	13997412	1453	126154											
ABCA5	23461	broad.mit.edu	37	chr17	67297231	67297231	+	Intron	DEL	A	-	-													taagctgaccctatgtgggcAaaaaagcctaaaaatcttta							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67297231	-	-	67297231	6	5	145	0	1	1	0	1	0	0	0	0	35	145	5	0		0	ABCA5	17	67297231	Intron	DEL	A	TCGA-49-6743-01A-11D-1855-08	99433	67297231	13897979	1454	126155											
ABCA5	23461	broad.mit.edu	37	chr17	67305562	67305562	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatattcttcagtaattaTgactgtaagatatcataaca	5	5	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67305562	C	C	67305562	3	2	145	1	0	0	0	0	1	0	0	0	35	1464	51	5	4762	5	ABCA5	17	67305562	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	8331	67305562	13889648	1455	126156											
SDK2	54549	broad.mit.edu	37	chr17	71344890	71344890	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagagcgggggagtggggccGagaggtgcactcactcagag	20	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71344890	C	C	71344890	1	2	145	0	1	0	0	0	0	0	0	0	14082	1073	37	4		4	SDK2	17	71344890	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4039328	71344890	9850320	1456	126157											
DNAI2	64446	broad.mit.edu	37	chr17	72310524	72310524	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctacaaatcactagcccccActgactcactgggcactgag	7	16	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72310524	T	T	72310524	1	4	145	0	1	0	0	0	0	0	0	0	4650	174	6	5		5	DNAI2	17	72310524	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	965634	72310524	8884686	1457	126158											
GPRC5C	55890	broad.mit.edu	37	chr17	72443246	72443246	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaagggactctccaggcTcctcctccccctggcaggcc	12	18	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72443246	G	G	72443246	1	3	145	0	1	0	0	0	0	0	0	0	6792	1566	54	5		5	GPRC5C	17	72443246	3'UTR	SNP	T	TCGA-49-6743-01A-11D-1855-08	132722	72443246	8751964	1458	126159											
KIAA0195	9772	broad.mit.edu	37	chr17	73487509	73487509	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggacctcaccgatggcctAtccacccgctccttctgcca	8	18	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73487509	T	T	73487509	2	4	145	1	0	0	0	0	0	0	0	1	8230	436	16	5		5	KIAA0195	17	73487509	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	1044263	73487509	7707701	1459	126160											
RNF157	114804	broad.mit.edu	37	chr17	74155488	74155488	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaagaggcgagatcgtcCtgacggggggcaggtggcca	19	9	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74155488	T	T	74155488	3	4	145	1	0	0	0	0	1	0	0	0	13565	681	24	4	839	4	RNF157	17	74155488	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	667979	74155488	7039722	1460	126161											
USP36	57602	broad.mit.edu	37	chr17	76802967	76802967	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccggacaatgttctcactCccttcaaaccacaaccaagc	4	18	2	0	rs138952849	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76802967	A	A	76802967	1	1	145	0	1	0	0	0	0	0	0	0	17194	870	30	3		3	USP36	17	76802967	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2647479	76802967	4392243	1461	126162											
CBX4	8535	broad.mit.edu	37	chr17	77807724	77807724	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctccccgcccccccgCgggaatggcgcttccccttc	9	22	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77807724	T	T	77807724	1	4	145	0	1	0	0	0	0	0	0	0	2746	783	27	4		4	CBX4	17	77807724	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	1004757	77807724	3387486	1462	126163											
FLJ35220	284131	broad.mit.edu	37	chr17	78388985	78388985	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtgcggaaggggtgcccgGgacgaagccatggccctgga	18	11	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78388985	A	A	78388985	1	1	145	0	1	0	0	0	0	0	0	0	5984	1247	43	4		4	FLJ35220	17	78388985	5'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	581261	78388985	2806225	1463	126164											
SLC38A10	124565	broad.mit.edu	37	chr17	79250762	79250762	+	Intron	DEL	C	-	-													agggccatgcctgtggcagtCccacggggcaccacggcaca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79250762	-	-	79250762	6	5	145	0	1	1	0	1	0	0	0	0	14716	870	30	0		0	SLC38A10	17	79250762	Intron	DEL	C	TCGA-49-6743-01A-11D-1855-08	861777	79250762	1944448	1464	126165											
LRRC45	201255	broad.mit.edu	37	chr17	79982204	79982204	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaacaccgtgctgcgctttCtggacttaaaggtgagatac	10	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79982204	T	T	79982204	2	4	145	1	0	0	0	0	0	0	0	1	9089	912	32	4		4	LRRC45	17	79982204	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	731442	79982204	1213006	1465	126166											
TBCD	6904	broad.mit.edu	37	chr17	80887119	80887119	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcccccacgtgccccacCgaggagaactggaaaagctg	10	16	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80887119	T	T	80887119	4	4	145	1	0	0	0	0	0	1	0	0	15755	644	23	4	2946	4	TBCD	17	80887119	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	904915	80887119	308091	1466	126167											
CLUL1	27098	broad.mit.edu	37	chr18	633349	633349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttacctgggcaggacagagGactgtgtggggaacttgacc	16	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	633349	T	T	633349	3	4	145	1	0	0	0	0	1	0	0	0	3602	1174	41	3	926	3	CLUL1	18	633349	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08		633349	77443899	1467	126168											
ADCYAP1	116	broad.mit.edu	37	chr18	905418	905418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcggagcgaggctggccCtgctggtctatgggataatc	16	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	905418	A	A	905418	3	1	145	1	0	0	0	0	1	0	0	0	302	680	24	2	33	2	ADCYAP1	18	905418	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	272069	905418	77171830	1468	126169											
NDC80	10403	broad.mit.edu	37	chr18	2599102	2599102	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagaattccaaaggttatGactttgaaattaagtttaat	7	4	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2599102	C	C	2599102	3	2	145	1	0	0	0	0	1	0	0	0	10337	1290	45	4	1348	4	NDC80	18	2599102	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1693684	2599102	75478146	1469	126170											
NDC80	10403	broad.mit.edu	37	chr18	2606291	2606291	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacaaatgataagtgagagtCcaaaaggactagaagaaata	10	4	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2606291	G	G	2606291	1	3	145	0	1	0	0	0	0	0	0	0	10337	870	30	4		4	NDC80	18	2606291	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	7189	2606291	75470957	1470	126171											
DLGAP1	9229	broad.mit.edu	37	chr18	3879413	3879413	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcccatggtcatcacgcccGagggggcgtggtagatgcac	15	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3879413	C	C	3879413	3	2	145	1	0	0	0	0	1	0	0	0	4599	1059	37	4	2372	4	DLGAP1	18	3879413	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1273122	3879413	74197835	1471	126172											
L3MBTL4	91133	broad.mit.edu	37	chr18	6046656	6046656	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacctgaatgacttttaGgtaaataacaaaactaaggc	7	7	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6046656	C	C	6046656	1	2	145	0	1	0	0	0	0	0	0	0	8666	1015	35	4		4	L3MBTL4	18	6046656	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2167243	6046656	72030592	1472	126173											
LAMA1	284217	broad.mit.edu	37	chr18	6947103	6947103	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatttgaatctgctgtttctCaattgctctgtctctgacac	6	10	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6947103	T	T	6947103	1	4	145	0	1	0	0	0	0	0	0	0	8677	841	29	4		4	LAMA1	18	6947103	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	900447	6947103	71130145	1473	126174											
MC5R	4161	broad.mit.edu	37	chr18	13825904	13825904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgtttctcactctggGtgtcatcagcctcttggaga	13	9	5	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13825904	T	T	13825904	3	4	145	1	0	0	0	0	1	0	0	0	9460	1261	44	3	142	3	MC5R	18	13825904	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	6878801	13825904	64251344	1474	126175											
SNRPD1	6632	broad.mit.edu	37	chr18	19192284	19192284	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgcgcgctcttgacgtcCggagcccctggagtaggcgc	14	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19192284	T	T	19192284	1	4	145	0	1	0	0	0	0	0	0	0	14978	667	23	4		4	SNRPD1	18	19192284	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	5366380	19192284	58884964	1475	126176											
C18orf45	85019	broad.mit.edu	37	chr18	20932309	20932309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttcccttagccaatggCtgactagtgtctgctacatt	8	11	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20932309	A	A	20932309	1	1	145	0	1	0	0	0	0	0	0	0	1921	812	28	3		3	C18orf45	18	20932309	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1740025	20932309	57144939	1476	126177											
RIOK3	8780	broad.mit.edu	37	chr18	21044238	21044238	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgatagctctgaagatgagGttgactggcaggatactcgt	14	7	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21044238	A	A	21044238	3	1	145	1	0	0	0	0	1	0	0	0	13490	1261	44	4	408	4	RIOK3	18	21044238	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	111929	21044238	57033010	1477	126178											
OSBPL1A	114876	broad.mit.edu	37	chr18	21921570	21921570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttgctgtctgtccactcCcattaacaatagtagtatca	5	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21921570	A	A	21921570	3	1	145	1	0	0	0	0	1	0	0	0	11371	623	22	2	2613	2	OSBPL1A	18	21921570	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	877332	21921570	56155678	1478	126179											
TAF4B	6875	broad.mit.edu	37	chr18	23845294	23845294	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccggtaatataccttaaAtatttttcatctttctttgt	5	7	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23845294	G	G	23845294	1	3	145	0	1	0	0	0	0	0	0	0	15646	116	4	5		5	TAF4B	18	23845294	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1923724	23845294	54231954	1479	126180											
DSC3	1825	broad.mit.edu	37	chr18	28597987	28597987	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagttgattaaattattagGtaactaaaacctgttaattt	5	3	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28597987	C	C	28597987	1	2	145	0	1	0	0	0	0	0	0	0	4807	1276	44	4		4	DSC3	18	28597987	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4752693	28597987	49479261	1480	126181											
DSC2	1824	broad.mit.edu	37	chr18	28650703	28650703	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actacttaccactttgtcatCtccaggagcttctgtgtttg	7	11	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28650703	T	T	28650703	3	4	145	1	0	0	0	0	1	0	0	0	4806	913	32	4	518	4	DSC2	18	28650703	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	52716	28650703	49426545	1481	126182											
DSC1	1823	broad.mit.edu	37	chr18	28719710	28719710	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtagaaaatggcactcaCctgcatccactgcaacaact	6	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28719710	A	A	28719710	5	1	145	1	0	0	0	0	0	0	1	0	4805	521	18	3	1084	3	DSC1	18	28719710	Splice_Site	SNP	C	TCGA-49-6743-01A-11D-1855-08	69007	28719710	49357538	1482	126183											
DSG1	1828	broad.mit.edu	37	chr18	28923407	28923407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtattactatccctccacCaccagtggtcccatttttga	5	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28923407	T	T	28923407	1	4	145	0	1	0	0	0	0	0	0	0	4816	609	21	4		4	DSG1	18	28923407	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	203697	28923407	49153841	1483	126184											
KIAA1632	57724	broad.mit.edu	37	chr18	43532389	43532389	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccttgctggtgaattgctGaagatctcagaacagctgaa	12	8	1	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43532389	A	A	43532389	3	1	145	1	0	0	0	0	1	0	0	0	8319	1294	45	4	6678	4	KIAA1632	18	43532389	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	14608982	43532389	34544859	1484	126185											
PIGN	23556	broad.mit.edu	37	chr18	59757723	59757723	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctaccttttgtttacagcAaacaccagattgttgtagag	8	8	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59757723	T	T	59757723	3	4	145	1	0	0	0	0	1	0	0	0	11988	130	5	5	558	5	PIGN	18	59757723	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	16225334	59757723	18319525	1485	126186											
SERPINB13	5275	broad.mit.edu	37	chr18	61264295	61264295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccccggtttgaggtggagGacggttacgatctagaggcg	17	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61264295	T	T	61264295	3	4	145	1	0	0	0	0	1	0	0	0	14213	1174	41	3	900	3	SERPINB13	18	61264295	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1506572	61264295	16812953	1486	126187											
SERPINB2	5055	broad.mit.edu	37	chr18	61564841	61564841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgccttccatagccaaCctccactcccaccctacccc	2	24	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61564841	A	A	61564841	1	1	145	0	1	0	0	0	0	0	0	0	14214	522	18	3		3	SERPINB2	18	61564841	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	300546	61564841	16512407	1487	126188											
TMX3	54495	broad.mit.edu	37	chr18	66381174	66381174	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatgtacacaataaatgctGattatttggctcataccgta	6	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66381174	A	A	66381174	1	1	145	0	1	0	0	0	0	0	0	0	16391	1305	45	4		4	TMX3	18	66381174	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4816333	66381174	11696074	1488	126189											
CD226	10666	broad.mit.edu	37	chr18	67540474	67540474	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagagggtatattggttatCggttttacctaggagagaaa	12	3	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67540474	G	G	67540474	3	3	145	1	0	0	0	0	1	0	0	0	3016	884	31	4	286	4	CD226	18	67540474	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1159300	67540474	10536774	1489	126190											
ZNF236	7776	broad.mit.edu	37	chr18	74587599	74587599	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggaatcttcagtcgcaCgtgcagcgagtccactcaga	11	11	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74587599	T	T	74587599	2	4	145	1	0	0	0	0	0	0	0	1	17915	535	19	4		4	ZNF236	18	74587599	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	7047125	74587599	3489649	1490	126191											
ATP9B	374868	broad.mit.edu	37	chr18	77108075	77108075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcccctgagaggcttgGggccacaggtgctcgtggaa	17	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77108075	T	T	77108075	1	4	145	0	1	0	0	0	0	0	0	0	1203	1247	43	2		2	ATP9B	18	77108075	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2520476	77108075	969173	1491	126192											
TMPRSS9	360200	broad.mit.edu	37	chr19	2415870	2415870	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctccaggaaggctgccCggcttcccctcctcaccagc	8	21	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2415870	A	A	2415870	1	1	145	0	1	0	0	0	0	0	0	0	16376	667	23	1		1	TMPRSS9	19	2415870	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08		2415870	56713113	1492	126193											
FSD1	79187	broad.mit.edu	37	chr19	4306047	4306047	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacgtggaggtgaaggcGgtggggcagtcctggggagg	22	6	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4306047	C	C	4306047	1	2	145	0	1	0	0	0	0	0	0	0	6130	1131	39	4		4	FSD1	19	4306047	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1890177	4306047	54822936	1493	126194											
VAV1	7409	broad.mit.edu	37	chr19	6853853	6853853	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actctgcagaaaagagcactGaggagccctttatcctggag	11	10	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6853853	A	A	6853853	1	1	145	0	1	0	0	0	0	0	0	0	17258	1305	45	4		4	VAV1	19	6853853	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2547806	6853853	52275130	1494	126195											
INSR	3643	broad.mit.edu	37	chr19	7143119	7143119	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggaacgacagtaggaCatgtatgatgacaccatcac	11	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7143119	T	T	7143119	1	4	145	0	1	0	0	0	0	0	0	0	7843	493	17	4		4	INSR	19	7143119	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	289266	7143119	51985864	1495	126196											
FBN3	84467	broad.mit.edu	37	chr19	8174022	8174022	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgtcgcctaagccccCcaccaccgccattagcagag	7	18	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8174022	G	G	8174022	1	3	145	0	1	0	0	0	0	0	0	0	5761	638	22	4		4	FBN3	19	8174022	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1030903	8174022	50954961	1496	126197											
MUC16	94025	broad.mit.edu	37	chr19	9065838	9065838	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtggctttggatgtctctGagtcagctaaggcagaggaa	14	6	2	2	rs142782534	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9065838	C	C	9065838	4	2	145	1	0	0	0	0	0	1	0	0	10067	1294	45	4	22243	4	MUC16	19	9065838	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	891816	9065838	50063145	1497	126198											
MUC16	94025	broad.mit.edu	37	chr19	9076419	9076419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctggacacgagaaaaaGttgagatgggagtagatgca	13	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9076419	A	A	9076419	3	1	145	1	0	0	0	0	1	0	0	0	10067	1029	36	4	32824	4	MUC16	19	9076419	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	10581	9076419	50052564	1498	126199											
ICAM3	3385	broad.mit.edu	37	chr19	10446542	10446542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagcgaagcagcaccaCcgtgaggctggtccggggcg	15	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10446542	A	A	10446542	3	1	145	1	0	0	0	0	1	0	0	0	7551	507	18	3	1209	3	ICAM3	19	10446542	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1370123	10446542	48682441	1499	126200											
KEAP1	9817	broad.mit.edu	37	chr19	10599996	10599997	+	Missense_Mutation	DNP	CC	AA	AA													cgctgttcagctggtcctgaCcatcatagcccccagcagca							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	10599997	AA	AA	10599996	3	1	145	1	0	0	0	0	1	0	0	0	8211	507	18	3	302	3	KEAP1	19	10599996	Missense_Mutation	DNP	CC	TCGA-49-6743-01A-11D-1855-08	153454	10599996	48528987	1500	126201											
RGL3	57139	broad.mit.edu	37	chr19	11505191	11505191	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggcattgtcaggaatcaGgagcactggtcaggagtgga	16	6	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11505191	A	A	11505191	2	1	145	1	0	0	0	0	0	0	0	1	13386	991	35	4		4	RGL3	19	11505191	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	905195	11505191	47623792	1501	126202											
PRKCSH	5589	broad.mit.edu	37	chr19	11552077	11552077	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagggccgtaaggagagaGagtccctgcagcagatggcc	16	9	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11552077	T	T	11552077	4	4	145	1	0	0	0	0	0	1	0	0	12622	943	33	3	391	3	PRKCSH	19	11552077	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	46886	11552077	47576906	1502	126203											
ZNF20	7568	broad.mit.edu	37	chr19	12243979	12243979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttaccacattgcctaCattcatagggtttctctcca	6	12	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12243979	A	A	12243979	3	1	145	1	0	0	0	0	1	0	0	0	17887	478	17	3	580	3	ZNF20	19	12243979	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	691902	12243979	46885004	1503	126204											
MAST1	22983	broad.mit.edu	37	chr19	12969280	12969280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacccggggctctggcggGgggagggtggcggaggccgg	24	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12969280	T	T	12969280	1	4	145	0	1	0	0	0	0	0	0	0	9416	1247	43	2		2	MAST1	19	12969280	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	725301	12969280	46159703	1504	126205											
CACNA1A	773	broad.mit.edu	37	chr19	13341145	13341145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacatgtacacagaggccCagatggagagagggatagag	15	6	0	5			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13341145	A	A	13341145	1	1	145	0	1	0	0	0	0	0	0	0	2564	609	21	2		2	CACNA1A	19	13341145	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	371865	13341145	45787838	1505	126206											
OR7A5	26659	broad.mit.edu	37	chr19	14938747	14938747	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagcaaagagtatgaaaaAatacatctgcatgaggcagg	10	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14938747	T	T	14938747	3	4	145	1	0	0	0	0	1	0	0	0	11310	14	1	5	656	5	OR7A5	19	14938747	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	1597602	14938747	44190236	1506	126207											
GTPBP3	84705	broad.mit.edu	37	chr19	17452350	17452350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaccagcaccacctccaGggttgcctggatgccctcgg	12	16	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17452350	T	T	17452350	3	4	145	1	0	0	0	0	1	0	0	0	6946	991	35	2	1443	2	GTPBP3	19	17452350	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2513603	17452350	41676633	1507	126208											
ARRDC2	27106	broad.mit.edu	37	chr19	18120710	18120710	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcccgaaagcagaaacgGgcagtggtggccagcctcgc	16	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18120710	T	T	18120710	2	4	145	1	0	0	0	0	0	0	0	1	987	1219	43	2		2	ARRDC2	19	18120710	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	668360	18120710	41008273	1508	126209											
PDE4C	5143	broad.mit.edu	37	chr19	18324363	18324363	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccccaaccctcactcccAactcccagatgccactctgg	4	22	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18324363	T	T	18324363	1	4	145	0	1	0	0	0	0	0	0	0	11735	145	5	5		5	PDE4C	19	18324363	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	203653	18324363	40804620	1509	126210											
HOMER3	9454	broad.mit.edu	37	chr19	19049118	19049118	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggagaagacttgggcCcagtctcatcggttccctcc	11	15	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19049118	T	T	19049118	1	4	145	0	1	0	0	0	0	0	0	0	7347	638	22	4		4	HOMER3	19	19049118	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	724755	19049118	40079865	1510	126211											
ZNF737	100129842	broad.mit.edu	37	chr19	20727617	20727617	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagtaaggtgtgaggaCgagttgaaggctttgccaca	15	6	0	2	rs143567096	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20727617	A	A	20727617	2	1	145	1	0	0	0	0	0	0	0	1	18255	523	19	3		3	ZNF737	19	20727617	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1678499	20727617	38401366	1511	126212											
ZNF208	7757	broad.mit.edu	37	chr19	22156888	22156888	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaggctttgccacattcTttacatttgtagggcttctc	8	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22156888	C	C	22156888	2	2	145	1	0	0	0	0	0	0	0	1	17892	1606	56	5		5	ZNF208	19	22156888	Silent	SNP	T	TCGA-49-6743-01A-11D-1855-08	1429271	22156888	36972095	1512	126213											
ZNF99	7652	broad.mit.edu	37	chr19	22939341	22939341	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacgttcttcacatttgtAgggtttctctccagtatgaa	8	10	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22939341	C	C	22939341	3	2	145	1	0	0	0	0	1	0	0	0	18333	420	15	5	286	5	ZNF99	19	22939341	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	782453	22939341	36189642	1513	126214											
ZNF536	9745	broad.mit.edu	37	chr19	31040291	31040291	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagccggagcgggggccCcagagcctggacaagccgat	15	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31040291	A	A	31040291	2	1	145	1	0	0	0	0	0	0	0	1	18101	610	22	2		2	ZNF536	19	31040291	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	8100950	31040291	28088692	1514	126215											
TSHZ3	57616	broad.mit.edu	37	chr19	31769850	31769850	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatcctgcagggactcaaaGgagtggccacagtacatgca	11	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31769850	C	C	31769850	2	2	145	1	0	0	0	0	0	0	0	1	16750	987	35	4		4	TSHZ3	19	31769850	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	729559	31769850	27359133	1515	126216											
DPY19L3	147991	broad.mit.edu	37	chr19	32928177	32928177	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgtcacagctctctacatAaccagctggctactcagtgg	8	12	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32928177	T	T	32928177	2	4	145	1	0	0	0	0	0	0	0	1	4782	352	13	5		5	DPY19L3	19	32928177	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	1158327	32928177	26200806	1516	126217											
SLC7A9	11136	broad.mit.edu	37	chr19	33355671	33355671	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgatgatggagatgccactGatgaggcccagctgggtgtg	16	8	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33355671	A	A	33355671	2	1	145	1	0	0	0	0	0	0	0	1	14819	1280	45	4		4	SLC7A9	19	33355671	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	427494	33355671	25773312	1517	126218											
UBA2	10054	broad.mit.edu	37	chr19	34936047	34936047	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttagatttactttttttatAatcatggatagatgtattgt	7	2	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34936047	G	G	34936047	1	3	145	0	1	0	0	0	0	0	0	0	16954	377	13	5		5	UBA2	19	34936047	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1580376	34936047	24192936	1518	126219											
KRTDAP	388533	broad.mit.edu	37	chr19	35979449	35979449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggccagagcttagccccCagccctctggagaaggtgaa	14	12	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35979449	A	A	35979449	1	1	145	0	1	0	0	0	0	0	0	0	8652	609	21	2		2	KRTDAP	19	35979449	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1043402	35979449	23149534	1519	126220											
ATP4A	495	broad.mit.edu	37	chr19	36046180	36046180	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggctactccgatgtctgcCttcttcagagctggggagtc	12	11	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36046180	T	T	36046180	2	4	145	1	0	0	0	0	0	0	0	1	1149	680	24	4		4	ATP4A	19	36046180	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	66731	36046180	23082803	1520	126221											
PRODH2	58510	broad.mit.edu	37	chr19	36291052	36291052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggttctcctgggccctcCggatcaggtaggggattacc	13	13	2	0	rs146900274		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36291052	A	A	36291052	3	1	145	1	0	0	0	0	1	0	0	0	12655	652	23	1	115	1	PRODH2	19	36291052	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	244872	36291052	22837931	1521	126222											
NPHS1	4868	broad.mit.edu	37	chr19	36342066	36342066	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggagttcggtacccagagtCtgggagaggagaggctgggg	20	6	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36342066	A	A	36342066	1	1	145	0	1	0	0	0	0	0	0	0	10677	928	32	3		3	NPHS1	19	36342066	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	51014	36342066	22786917	1522	126223											
APLP1	333	broad.mit.edu	37	chr19	36369707	36369707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatcctagaaaatgagaGggctgggggacgctctcttg	15	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36369707	T	T	36369707	1	4	145	0	1	0	0	0	0	0	0	0	780	1015	35	2		2	APLP1	19	36369707	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	27641	36369707	22759276	1523	126224											
ZFP82	284406	broad.mit.edu	37	chr19	36884607	36884607	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctctgatgtcgagtaaggTgtgcagtctgtctgaaggcc	14	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36884607	C	C	36884607	3	2	145	1	0	0	0	0	1	0	0	0	17779	1696	59	5	967	5	ZFP82	19	36884607	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	514900	36884607	22244376	1524	126225											
ZNF570	148268	broad.mit.edu	37	chr19	37966926	37966926	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtaaggatatcttcttGcaaaactgagcttctgctca	9	9	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37966926	A	A	37966926	1	1	145	0	1	0	0	0	0	0	0	0	18129	1334	46	4		4	ZNF570	19	37966926	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1082319	37966926	21162057	1525	126226											
ZNF570	148268	broad.mit.edu	37	chr19	37975783	37975783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataagtgtcaggaatgtaGgaaagcattcagccagattg	11	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37975783	T	T	37975783	3	4	145	1	0	0	0	0	1	0	0	0	18129	1000	35	2	1273	2	ZNF570	19	37975783	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	8857	37975783	21153200	1526	126227											
ZNF781	163115	broad.mit.edu	37	chr19	38160518	38160518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattattgaatgctttgccaCattccttacattcaaaggac	5	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38160518	A	A	38160518	3	1	145	1	0	0	0	0	1	0	0	0	18283	478	17	3	455	3	ZNF781	19	38160518	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	184735	38160518	20968465	1527	126228											
DPF1	8193	broad.mit.edu	37	chr19	38709569	38709569	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccccagaggtgggcccAcctgacagtccataatggtc	12	14	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38709569	G	G	38709569	5	3	145	1	0	0	0	0	0	0	1	0	4756	173	6	5	801	5	DPF1	19	38709569	Splice_Site	SNP	A	TCGA-49-6743-01A-11D-1855-08	549051	38709569	20419414	1528	126229											
CATSPERG	57828	broad.mit.edu	37	chr19	38849274	38849274	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttacggtggggaccctttCaagcccaggctaggcaagtc	12	12	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38849274	G	G	38849274	1	3	145	0	1	0	0	0	0	0	0	0	2718	841	29	4		4	CATSPERG	19	38849274	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	139705	38849274	20279709	1529	126230											
RYR1	6261	broad.mit.edu	37	chr19	38950989	38950989	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccataacctcccctcaatGatccccattgtccttcctta	2	19	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38950989	A	A	38950989	1	1	145	0	1	0	0	0	0	0	0	0	13879	1305	45	4		4	RYR1	19	38950989	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	101715	38950989	20177994	1530	126231											
RYR1	6261	broad.mit.edu	37	chr19	38990388	38990388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagggctgctggctgccatcGaagaggccatccgcatctcc	12	15	1	1	rs148426762	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38990388	A	A	38990388	3	1	145	1	0	0	0	0	1	0	0	0	13879	1059	37	4	7315	4	RYR1	19	38990388	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	39399	38990388	20138595	1531	126232											
RYR1	6261	broad.mit.edu	37	chr19	38995021	38995021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgggcagcagggagcccCaaaatggcctatgtggaggg	17	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38995021	A	A	38995021	1	1	145	0	1	0	0	0	0	0	0	0	13879	609	21	2		2	RYR1	19	38995021	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4633	38995021	20133962	1532	126233											
RYR1	6261	broad.mit.edu	37	chr19	39018312	39018312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctccccgtctctgcgctGgcagatggctctgtaccggg	14	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39018312	T	T	39018312	3	4	145	1	0	0	0	0	1	0	0	0	13879	1357	47	2	11002	2	RYR1	19	39018312	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	23291	39018312	20110671	1533	126234											
LGALS4	3960	broad.mit.edu	37	chr19	39292692	39292692	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctcctcggatccccaCgagccattcagaaggctgtt	8	14	3	1	rs111747864	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39292692	A	A	39292692	2	1	145	1	0	0	0	0	0	0	0	1	8817	523	19	3		3	LGALS4	19	39292692	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	274380	39292692	19836291	1534	126235											
DYRK1B	9149	broad.mit.edu	37	chr19	40320990	40320990	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttagtggggccttggatCagggtggtggggggtgtccc	20	6	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40320990	A	A	40320990	1	1	145	0	1	0	0	0	0	0	0	0	4895	841	29	3		3	DYRK1B	19	40320990	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1028298	40320990	18807993	1535	126236											
FCGBP	8857	broad.mit.edu	37	chr19	40408619	40408619	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattggcgttgcctgcctgtGagccattgggcttctggaag	14	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40408619	A	A	40408619	3	1	145	1	0	0	0	0	1	0	0	0	5835	1294	45	4	12113	4	FCGBP	19	40408619	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	87629	40408619	18720364	1536	126237											
AKT2	208	broad.mit.edu	37	chr19	40739743	40739743	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaccacccagcggtgatGgcagcgagcgtgcgtcctct	12	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40739743	A	A	40739743	1	1	145	0	1	0	0	0	0	0	0	0	480	1363	47	4		4	AKT2	19	40739743	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	331124	40739743	18389240	1537	126238											
CYP2F1	1572	broad.mit.edu	37	chr19	42027479	42027479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgctttcttcaggaatGgttgctgatgccaaatctcc	9	10	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42027479	T	T	42027479	1	4	145	0	1	0	0	0	0	0	0	0	4204	1363	47	2		2	CYP2F1	19	42027479	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	1287736	42027479	17101504	1538	126239											
HIF3A	64344	broad.mit.edu	37	chr19	46832652	46832652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctccctgctaccccgctgGgggagtgacccccggctgag	13	18	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46832652	T	T	46832652	3	4	145	1	0	0	0	0	1	0	0	0	7172	1241	43	2	1699	2	HIF3A	19	46832652	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	4805173	46832652	12296331	1539	126240											
FKRP	79147	broad.mit.edu	37	chr19	47259284	47259284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgcgccccgctgcgacGccctggacggagatgctgtg	15	17	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47259284	T	T	47259284	3	4	145	1	0	0	0	0	1	0	0	0	5974	1087	38	3	579	3	FKRP	19	47259284	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	426632	47259284	11869699	1540	126241											
ZC3H4	23211	broad.mit.edu	37	chr19	47587669	47587669	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtccgactgctggtggGgcttgtcatggtcacgactc	13	11	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47587669	A	A	47587669	3	1	145	1	0	0	0	0	1	0	0	0	17696	1232	43	4	2788	4	ZC3H4	19	47587669	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	328385	47587669	11541314	1541	126242											
CABP5	56344	broad.mit.edu	37	chr19	48542605	48542605	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcacaggattagcgagacCccacaagccctggccttcca	10	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48542605	G	G	48542605	1	3	145	0	1	0	0	0	0	0	0	0	2560	638	22	4		4	CABP5	19	48542605	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	954936	48542605	10586378	1542	126243											
CARD8	22900	broad.mit.edu	37	chr19	48733683	48733683	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttctctggtctcctaaatCactcagcttacctttgttag	5	12	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48733683	A	A	48733683	1	1	145	0	1	0	0	0	0	0	0	0	2677	841	29	3		3	CARD8	19	48733683	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	191078	48733683	10395300	1543	126244											
CYTH2	9266	broad.mit.edu	37	chr19	48977256	48977256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatactgcctgtgcaaccctGgggttttccagtccacaggt	11	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48977256	T	T	48977256	3	4	145	1	0	0	0	0	1	0	0	0	4237	1348	47	2	551	2	CYTH2	19	48977256	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	243573	48977256	10151727	1544	126245											
CYTH2	9266	broad.mit.edu	37	chr19	48982374	48982374	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcctgggacccctccccttCtgcagggcggctgtgagtgt	13	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48982374	T	T	48982374	1	4	145	0	1	0	0	0	0	0	0	0	4237	928	32	4		4	CYTH2	19	48982374	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5118	48982374	10146609	1545	126246											
HRC	3270	broad.mit.edu	37	chr19	49658175	49658175	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgactttgtggtcttgggacCtgtggcctgggagtaggtgc	17	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49658175	T	T	49658175	3	4	145	1	0	0	0	0	1	0	0	0	7419	681	24	4	1803	4	HRC	19	49658175	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	675801	49658175	9470808	1546	126247											
PIH1D1	55011	broad.mit.edu	37	chr19	49951240	49951240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccctgcccaggcctcaacCgcagccccgcccccaacctg	7	24	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49951240	A	A	49951240	1	1	145	0	1	0	0	0	0	0	0	0	12001	667	23	1		1	PIH1D1	19	49951240	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	293065	49951240	9177743	1547	126248											
SCAF1	58506	broad.mit.edu	37	chr19	50149471	50149471	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggctactgtgagtaagaaGagggggctgggggcctggct	19	7	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50149471	T	T	50149471	1	4	145	0	1	0	0	0	0	0	0	0	13980	957	33	3		3	SCAF1	19	50149471	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	198231	50149471	8979512	1548	126249											
VRK3	51231	broad.mit.edu	37	chr19	50504063	50504063	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaccagtttgagtgagaacTtttgcttctgtggtcctgag	11	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50504063	A	A	50504063	3	1	145	1	0	0	0	0	1	0	0	0	17348	1609	56	5	864	5	VRK3	19	50504063	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	354592	50504063	8624920	1549	126250											
SYT3	84258	broad.mit.edu	37	chr19	51132709	51132709	+	Frame_Shift_Del	DEL	C	-	-													tttgcgttgggccagctcggCcaggggcaccgagaattgaa							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51132709	-	-	51132709	7	5	145	1	0	1	0	1	0	0	0	0	15594	739	26	0	669	0	SYT3	19	51132709	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	628646	51132709	7996274	1550	126251											
SHANK1	50944	broad.mit.edu	37	chr19	51217150	51217150	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggccccgcccaggcacaGggttcgaatcacctctacag	12	15	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51217150	A	A	51217150	2	1	145	1	0	0	0	0	0	0	0	1	14377	991	35	4		4	SHANK1	19	51217150	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	84441	51217150	7911833	1551	126252											
KLK15	55554	broad.mit.edu	37	chr19	51329005	51329005	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggggctgctggccagctGtgggggcttctgctcagtca	18	11	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51329005	T	T	51329005	1	4	145	0	1	0	0	0	0	0	0	0	8474	1392	48	3		3	KLK15	19	51329005	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	111855	51329005	7799978	1552	126253											
KLK5	25818	broad.mit.edu	37	chr19	51451956	51451956	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atggtgtcatctatctgtctCgggtaagcatcctcgcacct	9	12	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51451956	G	G	51451956	2	3	145	1	0	0	0	0	0	0	0	1	8478	871	31	4		4	KLK5	19	51451956	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	122951	51451956	7677027	1553	126254											
CD33	945	broad.mit.edu	37	chr19	51728623	51728623	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcatggttactggttccggGaaggagccattatatccagg	12	8	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51728623	A	A	51728623	3	1	145	1	0	0	0	0	1	0	0	0	3035	1175	41	4	193	4	CD33	19	51728623	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	276667	51728623	7400360	1554	126255											
CD33	945	broad.mit.edu	37	chr19	51729552	51729552	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaactgaaggaaatcctctCttcctctcctagatgttcca	5	14	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51729552	T	T	51729552	1	4	145	0	1	0	0	0	0	0	0	0	3035	928	32	4		4	CD33	19	51729552	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	929	51729552	7399431	1555	126256											
C19orf75	284369	broad.mit.edu	37	chr19	51770795	51770795	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggatattggtatgtacctaTtgtgtctggaatctagtcta	10	6	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51770795	C	C	51770795	1	2	145	0	1	0	0	0	0	0	0	0	1969	1508	52	5		5	C19orf75	19	51770795	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	41243	51770795	7358188	1556	126257											
IGLON5	402665	broad.mit.edu	37	chr19	51830402	51830402	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggccgccctcctgcgctgcGaagccatggcggttcccccc	13	19	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51830402	A	A	51830402	3	1	145	1	0	0	0	0	1	0	0	0	7665	1059	37	4	737	4	IGLON5	19	51830402	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	59607	51830402	7298581	1557	126258											
ZNF175	7728	broad.mit.edu	37	chr19	52090622	52090622	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgggaaggtctttattcaGagatcagaattgcttacgca	11	6	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52090622	A	A	52090622	2	1	145	1	0	0	0	0	0	0	0	1	17871	933	33	4		4	ZNF175	19	52090622	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	260220	52090622	7038361	1558	126259											
SIGLEC5	8778	broad.mit.edu	37	chr19	52130374	52130374	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactccctacaaacaccaccCtgtaccttccctgggaccaa	4	18	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52130374	T	T	52130374	1	4	145	0	1	0	0	0	0	0	0	0	14424	696	24	4		4	SIGLEC5	19	52130374	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	39752	52130374	6998609	1559	126260											
ZNF610	162963	broad.mit.edu	37	chr19	52870074	52870074	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcacaacattggaggactcAggagaaaaaccttacaaata	8	8	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52870074	G	G	52870074	1	3	145	0	1	0	0	0	0	0	0	0	18163	203	7	5		5	ZNF610	19	52870074	3'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	739700	52870074	6258909	1560	126261											
ZNF160	90338	broad.mit.edu	37	chr19	53577383	53577383	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccttctctctgcccatctGagctcttacctgtgaccacg	8	16	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53577383	C	C	53577383	1	2	145	0	1	0	0	0	0	0	0	0	17865	1305	45	4		4	ZNF160	19	53577383	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	707309	53577383	5551600	1561	126262											
ZNF761	388561	broad.mit.edu	37	chr19	53959685	53959685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgaagaatgtgacaaaGctttccgtgtgaaatcaaac	9	6	1	4	rs145130738	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53959685	T	T	53959685	3	4	145	1	0	0	0	0	1	0	0	0	18265	971	34	3	1935	3	ZNF761	19	53959685	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	382302	53959685	5169298	1562	126263											
ZNF813	126017	broad.mit.edu	37	chr19	53987242	53987242	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtccctcttttctcacTtagattccatctcttgtgac	4	14	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53987242	C	C	53987242	1	2	145	0	1	0	0	0	0	0	0	0	18304	1624	56	5		5	ZNF813	19	53987242	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	27557	53987242	5141741	1563	126264											
TMC4	147798	broad.mit.edu	37	chr19	54675802	54675802	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caccccagggtctcggtaccGaagggtggcagcactgggca	15	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54675802	A	A	54675802	3	1	145	1	0	0	0	0	1	0	0	0	16110	1057	37	4	2046	4	TMC4	19	54675802	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	688560	54675802	4453181	1564	126265											
LILRA3	11026	broad.mit.edu	37	chr19	54804020	54804020	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaatttgcccctgaagcctGagcaggtcctcccctccctg	10	16	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54804020	A	A	54804020	1	1	145	0	1	0	0	0	0	0	0	0	8858	1305	45	4		4	LILRA3	19	54804020	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	128218	54804020	4324963	1565	126266											
LILRA4	23547	broad.mit.edu	37	chr19	54850419	54850419	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtggccacggtgcccgTagacacagacagacacatgg	14	11	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54850419	G	G	54850419	1	3	145	0	1	0	0	0	0	0	0	0	8859	1653	57	5		5	LILRA4	19	54850419	5'UTR	SNP	T	TCGA-49-6743-01A-11D-1855-08	46399	54850419	4278564	1566	126267											
TTYH1	57348	broad.mit.edu	37	chr19	54941002	54941002	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccaggcactgggtgctgtGggagtgtggaatcggggcag	20	7	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54941002	A	A	54941002	1	1	145	0	1	0	0	0	0	0	0	0	16865	1363	47	4		4	TTYH1	19	54941002	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	90583	54941002	4187981	1567	126268											
LENG8	114823	broad.mit.edu	37	chr19	54967589	54967589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgccccctaagggccggGgcggtcgaggggcccatatg	16	15	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54967589	T	T	54967589	3	4	145	1	0	0	0	0	1	0	0	0	8796	1232	43	2	1424	2	LENG8	19	54967589	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	26587	54967589	4161394	1568	126269											
LILRA1	11024	broad.mit.edu	37	chr19	55106662	55106662	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctcacaggtggcatttggCagcttcattctgtgtaagga	12	8	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55106662	G	G	55106662	2	3	145	1	0	0	0	0	0	0	0	1	8856	697	25	4		4	LILRA1	19	55106662	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	139073	55106662	4022321	1569	126270											
LILRB1	10859	broad.mit.edu	37	chr19	55144158	55144158	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatgctacggtgcacacaAcctctcctccgagtggtcgg	11	14	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55144158	C	C	55144158	3	2	145	1	0	0	0	0	1	0	0	0	8862	43	2	5	923	5	LILRB1	19	55144158	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	37496	55144158	3984825	1570	126271											
NLRP7	199713	broad.mit.edu	37	chr19	55453136	55453136	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactggggggaaaaaaggaAaaacagttcacgagttacca	12	6	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55453136	G	G	55453136	1	3	145	0	1	0	0	0	0	0	0	0	10577	29	1	5		5	NLRP7	19	55453136	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	308978	55453136	3675847	1571	126272											
EPN1	29924	broad.mit.edu	37	chr19	56206162	56206162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgacatgagtggggtcagGggatctctggctgaggctgt	17	6	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56206162	T	T	56206162	3	4	145	1	0	0	0	0	1	0	0	0	5227	1223	43	2	1710	2	EPN1	19	56206162	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	753026	56206162	2922821	1572	126273											
NLRP5	126206	broad.mit.edu	37	chr19	56539944	56539944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctactgctgggacttgaCatgacttccaggaacttcaa	8	11	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56539944	A	A	56539944	1	1	145	0	1	0	0	0	0	0	0	0	10575	493	17	3		3	NLRP5	19	56539944	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	333782	56539944	2589039	1573	126274											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56735007	56735007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacacactcacctgcctcCtggacaatgcagggaccctg	8	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56735007	A	A	56735007	3	1	145	1	0	0	0	0	1	0	0	0	18367	681	24	2	921	2	ZSCAN5A	19	56735007	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	195063	56735007	2393976	1574	126275											
ZNF667	63934	broad.mit.edu	37	chr19	56973727	56973727	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggatttggatttcccccGtgcagaaggcatcctttcct	9	12	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56973727	T	T	56973727	2	4	145	1	0	0	0	0	0	0	0	1	18201	1144	40	3		3	ZNF667	19	56973727	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	238720	56973727	2155256	1575	126276											
ZNF460	10794	broad.mit.edu	37	chr19	57803220	57803220	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcatgtcagggctcacaagGcaccagtggattcatactgg	12	11	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57803220	C	C	57803220	3	2	145	1	0	0	0	0	1	0	0	0	18051	1194	42	4	1321	4	ZNF460	19	57803220	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	829493	57803220	1325763	1576	126277											
ZNF274	10782	broad.mit.edu	37	chr19	58723434	58723434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgggagaaaaaaaaaatcCtgacttttgaacttaattat	6	4	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58723434	T	T	58723434	1	4	145	0	1	0	0	0	0	0	0	0	17935	696	24	4		4	ZNF274	19	58723434	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	920214	58723434	405549	1577	126278											
SRXN1	140809	broad.mit.edu	37	chr20	629273	629273	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagagaatgcacccctgCtatcccttctgcatggccca	8	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	629273	T	T	629273	1	4	145	0	1	0	0	0	0	0	0	0	15291	812	28	4		4	SRXN1	20	629273	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08		629273	62396247	1578	126279											
C20orf54	113278	broad.mit.edu	37	chr20	745853	745853	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgggtgatgctgggtaccTgtgcgatgtcagtctccctc	13	12	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	745853	A	A	745853	3	1	145	1	0	0	0	0	1	0	0	0	2136	1594	55	5	859	5	C20orf54	20	745853	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	116580	745853	62279667	1579	126280											
PSMF1	9491	broad.mit.edu	37	chr20	1099549	1099549	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgtcggtgaccaggtaCgccacggagccggccagggt	18	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1099549	T	T	1099549	1	4	145	0	1	0	0	0	0	0	0	0	12816	551	19	4		4	PSMF1	20	1099549	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	353696	1099549	61925971	1580	126281											
SIRPB2	284759	broad.mit.edu	37	chr20	1459098	1459098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccaaagttgtaaatggcCtcccggctcagaccagctcc	8	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1459098	A	A	1459098	3	1	145	1	0	0	0	0	1	0	0	0	14447	680	24	2	434	2	SIRPB2	20	1459098	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	359549	1459098	61566422	1581	126282											
SIRPB1	10326	broad.mit.edu	37	chr20	1546816	1546816	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacagtcaggccttctgtttCcagcagatgtagatggcaga	11	9	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1546816	A	A	1546816	3	1	145	1	0	0	0	0	1	0	0	0	14446	856	30	3	18	3	SIRPB1	20	1546816	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	87718	1546816	61478704	1582	126283											
TGM6	343641	broad.mit.edu	37	chr20	2376003	2376003	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attggccgctacctgctgagCatcaggctttcctctcaccg	9	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2376003	G	G	2376003	3	3	145	1	0	0	0	0	1	0	0	0	15957	709	25	4	355	4	TGM6	20	2376003	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	829187	2376003	60649517	1583	126284											
CPXM1	56265	broad.mit.edu	37	chr20	2776473	2776473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccacgagctcacccccgtGgaggttggcacttagcacaa	10	15	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2776473	T	T	2776473	3	4	145	1	0	0	0	0	1	0	0	0	3869	1348	47	2	728	2	CPXM1	20	2776473	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	400470	2776473	60249047	1584	126285											
CPXM1	56265	broad.mit.edu	37	chr20	2777180	2777180	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccatgccagtacccagctcAtgctccccaggcttgtccga	8	18	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2777180	C	C	2777180	3	2	145	1	0	0	0	0	1	0	0	0	3869	214	8	5	1194	5	CPXM1	20	2777180	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	707	2777180	60248340	1585	126286											
BMP2	650	broad.mit.edu	37	chr20	6759010	6759010	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcttcaggttttccgagaAcagatgcaagatgctttagg	12	7	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6759010	G	G	6759010	2	3	145	1	0	0	0	0	0	0	0	1	1465	40	2	5		5	BMP2	20	6759010	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	3981830	6759010	56266510	1586	126287											
HAO1	54363	broad.mit.edu	37	chr20	7886947	7886947	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattttcctcaggagaaaatGataaagtactggtttcaaaa	7	5	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7886947	C	C	7886947	4	2	145	1	0	0	0	0	0	1	0	0	7017	1294	45	4	557	4	HAO1	20	7886947	Nonsense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1127937	7886947	55138573	1587	126288											
C20orf94	128710	broad.mit.edu	37	chr20	10594215	10594215	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctgctctgaatggctgCcttcaggctatccacgcctt	9	13	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10594215	T	T	10594215	1	4	145	0	1	0	0	0	0	0	0	0	2143	754	26	4		4	C20orf94	20	10594215	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2707268	10594215	52431305	1588	126289											
JAG1	182	broad.mit.edu	37	chr20	10630973	10630973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcctggcaggtgccccCgtgggaacagttattaggag	15	10	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10630973	A	A	10630973	3	1	145	1	0	0	0	0	1	0	0	0	8004	652	23	1	2572	1	JAG1	20	10630973	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	36758	10630973	52394547	1589	126290											
BTBD3	22903	broad.mit.edu	37	chr20	11903589	11903589	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaaactctgaatgccaaaGaaattgtggtttttgaggca	12	5	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11903589	A	A	11903589	3	1	145	1	0	0	0	0	1	0	0	0	1554	943	33	4	858	4	BTBD3	20	11903589	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1272616	11903589	51121931	1590	126291											
SEL1L2	80343	broad.mit.edu	37	chr20	13845825	13845825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccataccttgaatggcagCtcgattccataggagaagcg	10	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13845825	A	A	13845825	3	1	145	1	0	0	0	0	1	0	0	0	14124	797	28	3	449	3	SEL1L2	20	13845825	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1942236	13845825	49179695	1591	126292											
KIF16B	55614	broad.mit.edu	37	chr20	16352495	16352495	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactacgcccttcacaacaGggagcaatctccttctaaat	5	13	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16352495	A	A	16352495	1	1	145	0	1	0	0	0	0	0	0	0	8348	1015	35	4		4	KIF16B	20	16352495	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2506670	16352495	46673025	1592	126293											
RALGAPA2	57186	broad.mit.edu	37	chr20	20616361	20616361	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaaatccaatttttggtTgtctaaatagcaactaagaa	5	5	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20616361	C	C	20616361	1	2	145	0	1	0	0	0	0	0	0	0	13122	1827	63	5		5	RALGAPA2	20	20616361	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	4263866	20616361	42409159	1593	126294											
CST4	1472	broad.mit.edu	37	chr20	23667826	23667826	+	Frame_Shift_Del	DEL	C	-	-													tacgtcgaagaagtaattcaCccccccaaaggtctgcacac					rs140501583		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23667826	-	-	23667826	7	5	145	1	0	1	0	1	0	0	0	0	4008	507	18	0	192	0	CST4	20	23667826	Frame_Shift_Del	DEL	C	TCGA-49-6743-01A-11D-1855-08	3051465	23667826	39357694	1594	126295											
XKR7	343702	broad.mit.edu	37	chr20	30585071	30585071	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagtggcccgcaccttgcgGacagaggggcctgtcatccg	14	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30585071	C	C	30585071	2	2	145	1	0	0	0	0	0	0	0	1	17563	1161	41	4		4	XKR7	20	30585071	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	6917245	30585071	32440449	1595	126296											
C20orf70	140683	broad.mit.edu	37	chr20	31757084	31757084	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgttcttcacgagggacttGagacagttgacaatactctt	9	9	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31757084	C	C	31757084	3	2	145	1	0	0	0	0	1	0	0	0	2138	1291	45	4	135	4	C20orf70	20	31757084	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1172013	31757084	31268436	1596	126297											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31981731	31981731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaactgcaagtcctactGccatggggccactggctcat	11	12	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31981731	A	A	31981731	1	1	145	0	1	0	0	0	0	0	0	0	3175	1334	46	4		4	CDK5RAP1	20	31981731	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	224647	31981731	31043789	1597	126298											
GGT7	2686	broad.mit.edu	37	chr20	33447221	33447221	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaccttggggcatgcccCcacccgcacaacacgagcac	11	17	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33447221	T	T	33447221	1	4	145	0	1	0	0	0	0	0	0	0	6428	638	22	4		4	GGT7	20	33447221	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1465490	33447221	29578299	1598	126299											
PHF20	51230	broad.mit.edu	37	chr20	34457329	34457329	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacactaagaaattatgtatCtttttttgtgtggttttata	7	3	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34457329	G	G	34457329	1	3	145	0	1	0	0	0	0	0	0	0	11926	928	32	4		4	PHF20	20	34457329	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1010108	34457329	28568191	1599	126300											
MANBAL	63905	broad.mit.edu	37	chr20	35929811	35929811	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacccattcccaagtcccacGaggcggtgagtttttccctg	9	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35929811	A	A	35929811	3	1	145	1	0	0	0	0	1	0	0	0	9312	1059	37	4	147	4	MANBAL	20	35929811	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1472482	35929811	27095709	1600	126301											
KIAA1755	85449	broad.mit.edu	37	chr20	36870433	36870433	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaatctggaacaggtcagGgactaggatgaggcagcatt	15	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36870433	T	T	36870433	1	4	145	0	1	0	0	0	0	0	0	0	8327	1247	43	2		2	KIAA1755	20	36870433	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	940622	36870433	26155087	1601	126302											
PPP1R16B	26051	broad.mit.edu	37	chr20	37529104	37529104	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttgctggggtacaccttGgtggggttttgagtgccggg	17	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37529104	A	A	37529104	1	1	145	0	1	0	0	0	0	0	0	0	12467	1363	47	4		4	PPP1R16B	20	37529104	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	658671	37529104	25496416	1602	126303											
DHX35	60625	broad.mit.edu	37	chr20	37632678	37632678	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttctgtgtagtagatctAaaagcacacaataaataata	5	5	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37632678	G	G	37632678	1	3	145	0	1	0	0	0	0	0	0	0	4548	377	13	5		5	DHX35	20	37632678	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	103574	37632678	25392842	1603	126304											
LPIN3	64900	broad.mit.edu	37	chr20	39983387	39983387	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggccgaggaggtgggtggtCacagtcgagggccagggcca	20	9	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39983387	T	T	39983387	1	4	145	0	1	0	0	0	0	0	0	0	9007	841	29	4		4	LPIN3	20	39983387	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2350709	39983387	23042133	1604	126305											
JPH2	57158	broad.mit.edu	37	chr20	42814932	42814932	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtttctcaccctccctggctCcaccccacctctgcgggccc	7	22	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42814932	G	G	42814932	1	3	145	0	1	0	0	0	0	0	0	0	8031	870	30	4		4	JPH2	20	42814932	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2831545	42814932	20210588	1605	126306											
STK4	6789	broad.mit.edu	37	chr20	43600677	43600677	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttatgttctagttcctaGcaaataaaatgtattttgtg	6	4	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43600677	A	A	43600677	1	1	145	0	1	0	0	0	0	0	0	0	15424	986	34	4		4	STK4	20	43600677	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	785745	43600677	19424843	1606	126307											
SLPI	6590	broad.mit.edu	37	chr20	43883108	43883108	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actccaacttacactttccaGagccttccacagcccaaggt	5	16	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43883108	C	C	43883108	3	2	145	1	0	0	0	0	1	0	0	0	14867	942	33	4	337	4	SLPI	20	43883108	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	282431	43883108	19142412	1607	126308											
PIGT	51604	broad.mit.edu	37	chr20	44049033	44049033	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctgccccctggcttcagaGagccgagtctatgtggacat	11	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44049033	C	C	44049033	3	2	145	1	0	0	0	0	1	0	0	0	11994	933	33	4	857	4	PIGT	20	44049033	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	165925	44049033	18976487	1608	126309											
PARD6B	84612	broad.mit.edu	37	chr20	49366952	49366952	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcagccatagcaagcagctCaaacacggaatttgaaacac	8	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49366952	T	T	49366952	3	4	145	1	0	0	0	0	1	0	0	0	11540	838	29	4	1056	4	PARD6B	20	49366952	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	5317919	49366952	13658568	1609	126310											
SALL4	57167	broad.mit.edu	37	chr20	50405400	50405400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcccacacaaacccacCtttaagttgcctttggtggt	8	12	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50405400	A	A	50405400	3	1	145	1	0	0	0	0	1	0	0	0	13924	695	24	2	427	2	SALL4	20	50405400	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1038448	50405400	12620120	1610	126311											
ZFP64	55734	broad.mit.edu	37	chr20	50769144	50769144	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgggagttcctctgggttCtgggccaccaaggcaggcgg	16	12	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50769144	T	T	50769144	2	4	145	1	0	0	0	0	0	0	0	1	17778	912	32	4		4	ZFP64	20	50769144	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	363744	50769144	12256376	1611	126312											
BCAS1	8537	broad.mit.edu	37	chr20	52612525	52612525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccagtccttctgggtccCcagggacagagcaatccgca	10	15	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52612525	A	A	52612525	3	1	145	1	0	0	0	0	1	0	0	0	1355	623	22	2	998	2	BCAS1	20	52612525	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1843381	52612525	10412995	1612	126313											
CASS4	57091	broad.mit.edu	37	chr20	55020975	55020975	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccatcctcacgcttcccaGacctgtccgggcctcactgc	9	19	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55020975	T	T	55020975	3	4	145	1	0	0	0	0	1	0	0	0	2709	942	33	3	489	3	CASS4	20	55020975	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2408450	55020975	8004545	1613	126314											
C20orf43	51507	broad.mit.edu	37	chr20	55049657	55049657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaaacgacttttggattGtgttcagtttattcttcctt	7	6	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55049657	T	T	55049657	1	4	145	0	1	0	0	0	0	0	0	0	2134	1392	48	3		3	C20orf43	20	55049657	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	28682	55049657	7975863	1614	126315											
TFAP2C	7022	broad.mit.edu	37	chr20	55206206	55206206	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccggcgatgccggccagttCgcagtagcggggtttcgcac	15	14	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55206206	T	T	55206206	1	4	145	0	1	0	0	0	0	0	0	0	15912	899	31	4		4	TFAP2C	20	55206206	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	156549	55206206	7819314	1615	126316											
ZBP1	81030	broad.mit.edu	37	chr20	56185196	56185196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggggtccactctgccccCtagctcacctgcgtcctccc	8	20	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56185196	A	A	56185196	1	1	145	0	1	0	0	0	0	0	0	0	17647	696	24	2		2	ZBP1	20	56185196	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	978990	56185196	6840324	1616	126317											
CDH4	1002	broad.mit.edu	37	chr20	60499411	60499411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatactcaaagctgtcagacCcagcgagctggctgcacatc	10	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60499411	A	A	60499411	3	1	145	1	0	0	0	0	1	0	0	0	3142	623	22	2	1690	2	CDH4	20	60499411	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	4314215	60499411	2526109	1617	126318											
EEF1A2	1917	broad.mit.edu	37	chr20	62121997	62121997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctccactgacttcacCtcagtggtgatgttcactgg	9	12	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62121997	A	A	62121997	3	1	145	1	0	0	0	0	1	0	0	0	4964	680	24	2	539	2	EEF1A2	20	62121997	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1622586	62121997	903523	1618	126319											
PCMTD2	55251	broad.mit.edu	37	chr20	62905031	62905031	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgtgtgctgttgaagGgtcacctggaggcagacgtt	15	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62905031	T	T	62905031	1	4	145	0	1	0	0	0	0	0	0	0	11681	1247	43	2		2	PCMTD2	20	62905031	3'UTR	SNP	G	TCGA-49-6743-01A-11D-1855-08	783034	62905031	120489	1619	126320											
TPTE	7179	broad.mit.edu	37	chr21	10934883	10934883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaaatcatcttcttacGtgcagtaatctgttttctat	4	8	5	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10934883	T	T	10934883	1	4	145	0	1	0	0	0	0	0	0	0	16554	1160	40	3		3	TPTE	21	10934883	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08		10934883	37195012	1620	126321											
TPTE	7179	broad.mit.edu	37	chr21	10973801	10973801	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatgtcaaaagaatatagTcagacaggagacacaattca	9	6	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10973801	A	A	10973801	1	1	145	0	1	0	0	0	0	0	0	0	16554	1682	58	5		5	TPTE	21	10973801	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	38918	10973801	37156094	1621	126322											
TMPRSS15	5651	broad.mit.edu	37	chr21	19647584	19647584	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtaatgttatattctggcAtctgctgttggcatctctca	8	9	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19647584	T	T	19647584	3	4	145	1	0	0	0	0	1	0	0	0	16369	217	8	5	233	5	TMPRSS15	21	19647584	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	8673783	19647584	28482311	1622	126323											
TMPRSS15	5651	broad.mit.edu	37	chr21	19744627	19744627	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttgaaccaggcaggcactCtattgagacatttcctttaa	7	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19744627	A	A	19744627	4	1	145	1	0	0	0	0	0	1	0	0	16369	922	32	3	2592	3	TMPRSS15	21	19744627	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	97043	19744627	28385268	1623	126324											
GABPA	2551	broad.mit.edu	37	chr21	27136489	27136489	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttcctgcttgtattggaaGaaaaaaaatttctccttgtc	6	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27136489	A	A	27136489	1	1	145	0	1	0	0	0	0	0	0	0	6217	957	33	4		4	GABPA	21	27136489	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	7391862	27136489	20993406	1624	126325											
RNF160	26046	broad.mit.edu	37	chr21	30302726	30302726	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacggatccaaatccaatgcCtttgtttgatgtacttcagg	9	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30302726	G	G	30302726	1	3	145	0	1	0	0	0	0	0	0	0	13566	696	24	4		4	RNF160	21	30302726	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	3166237	30302726	17827169	1625	126326											
RNF160	26046	broad.mit.edu	37	chr21	30329599	30329599	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaataaaaatattcaagcTtgcatgaaatccaaacttca	3	8	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30329599	A	A	30329599	1	1	145	0	1	0	0	0	0	0	0	0	13566	1624	56	5		5	RNF160	21	30329599	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	26873	30329599	17800296	1626	126327											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654988	31654988	+	Frame_Shift_Del	DEL	G	-	-													agggcacagaggagtttgacGggtcacaaccagtggtactg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31654988	-	-	31654988	7	5	145	1	0	1	0	1	0	0	0	0	8614	1116	39	0	505	0	KRTAP24-1	21	31654988	Frame_Shift_Del	DEL	G	TCGA-49-6743-01A-11D-1855-08	1325389	31654988	16474907	1627	126328											
KRTAP6-1	337966	broad.mit.edu	37	chr21	31986077	31986077	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggagcgggagccatagccAtagccacagcccagtctgcg	14	13	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31986077	G	G	31986077	2	3	145	1	0	0	0	0	0	0	0	1	8641	224	8	5		5	KRTAP6-1	21	31986077	Silent	SNP	A	TCGA-49-6743-01A-11D-1855-08	331089	31986077	16143818	1628	126329											
KRTAP8-1	337879	broad.mit.edu	37	chr21	32185344	32185344	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacacctcggggatttcagcCaatcagtagagagcaaatgg	11	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32185344	G	G	32185344	1	3	145	0	1	0	0	0	0	0	0	0	8644	609	21	4		4	KRTAP8-1	21	32185344	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	199267	32185344	15944551	1629	126330											
TIAM1	7074	broad.mit.edu	37	chr21	32519381	32519381	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccactggaaatatcagcAggttatggcagggagctcac	11	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32519381	T	T	32519381	1	4	145	0	1	0	0	0	0	0	0	0	16013	203	7	5		5	TIAM1	21	32519381	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	334037	32519381	15610514	1630	126331											
IL10RB	3588	broad.mit.edu	37	chr21	34652263	34652263	+	Intron	DEL	C	-	-													tttcagaggtagtaggctttCatattctttgcagaatcttg							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34652263	-	-	34652263	6	5	145	0	1	1	0	1	0	0	0	0	7691	841	29	0		0	IL10RB	21	34652263	Intron	DEL	C	TCGA-49-6743-01A-11D-1855-08	2132882	34652263	13477632	1631	126332											
ITSN1	6453	broad.mit.edu	37	chr21	35255959	35255959	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgtctatactctccgagcaGaaagcataaatgaaaggtga	10	8	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35255959	A	A	35255959	3	1	145	1	0	0	0	0	1	0	0	0	7996	943	33	4	4804	4	ITSN1	21	35255959	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	603696	35255959	12873936	1632	126333											
DYRK1A	1859	broad.mit.edu	37	chr21	38858940	38858940	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaacaggcaaacagcgcAgtgtgccccaacccacacca	7	16	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38858940	T	T	38858940	1	4	145	0	1	0	0	0	0	0	0	0	4894	203	7	5		5	DYRK1A	21	38858940	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	3602981	38858940	9270955	1633	126334											
LCA5L	150082	broad.mit.edu	37	chr21	40778136	40778136	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctagctccatttcctctCtgttactgagatgcttgcct	7	13	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40778136	G	G	40778136	3	3	145	1	0	0	0	0	1	0	0	0	8729	913	32	4	331	4	LCA5L	21	40778136	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1919196	40778136	7351759	1634	126335											
BACE2	25825	broad.mit.edu	37	chr21	42598273	42598273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatagacacgtactttgaCacagagaggtaagcgctggc	11	9	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42598273	A	A	42598273	3	1	145	1	0	0	0	0	1	0	0	0	1287	477	17	3	399	3	BACE2	21	42598273	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1820137	42598273	5531622	1635	126336											
RIPK4	54101	broad.mit.edu	37	chr21	43161901	43161901	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggagctccacgacaccCcgcaccctcctctccacggc	8	21	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43161901	A	A	43161901	2	1	145	1	0	0	0	0	0	0	0	1	13494	610	22	2		2	RIPK4	21	43161901	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	563628	43161901	4967994	1636	126337											
UBASH3A	53347	broad.mit.edu	37	chr21	43829722	43829722	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgacttcttcacggtgaGtcaacccagtgtgccttcaa	9	12	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43829722	A	A	43829722	1	1	145	0	1	0	0	0	0	0	0	0	16965	1044	36	4		4	UBASH3A	21	43829722	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	667821	43829722	4300173	1637	126338											
PDE9A	5152	broad.mit.edu	37	chr21	44171128	44171128	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaataagaccacacggGgcttgggggttgggtttgtc	15	8	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44171128	A	A	44171128	1	1	145	0	1	0	0	0	0	0	0	0	11749	1247	43	4		4	PDE9A	21	44171128	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	341406	44171128	3958767	1638	126339											
U2AF1	7307	broad.mit.edu	37	chr21	44521481	44521481	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactgtgggacttacagtgtGagccgtcagccgtctgtgca	13	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44521481	A	A	44521481	3	1	145	1	0	0	0	0	1	0	0	0	16947	1294	45	4	623	4	U2AF1	21	44521481	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	350353	44521481	3608414	1639	126340											
PFKL	5211	broad.mit.edu	37	chr21	45736372	45736372	+	Silent	SNP	C	A	A													ctgtgctgggccacgtgcagCggggagggacgccctctgcc							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45736372	A	A	45736372	2	1	145	1	0	0	0	0	0	0	0	1	11859	759	27	3		3	PFKL	21	45736372	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1214891	45736372	2393523	1640	126341	548	2									
PFKL	5211	broad.mit.edu	37	chr21	45736374	45736374	+	Silent	SNP	G	C	C													gtgctgggccacgtgcagcgGggagggacgccctctgcctt							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45736374	C	C	45736374	2	2	145	1	0	0	0	0	0	0	0	1	11859	1219	43	4		4	PFKL	21	45736374	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2	45736374	2393521	1641	126342	548	2									
PFKL	5211	broad.mit.edu	37	chr21	45739151	45739151	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgccggccagatctgccctCgtcaggcccaccagacaggg	12	16	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45739151	T	T	45739151	1	4	145	0	1	0	0	0	0	0	0	0	11859	899	31	4		4	PFKL	21	45739151	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	2777	45739151	2390744	1642	126343											
KRTAP10-3	386682	broad.mit.edu	37	chr21	45978229	45978229	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcagacgggcacacagcAgatgggcttgcagcagacag	15	10	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45978229	T	T	45978229	3	4	145	1	0	0	0	0	1	0	0	0	8581	188	7	5	299	5	KRTAP10-3	21	45978229	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	239078	45978229	2151666	1643	126344											
C21orf29	54084	broad.mit.edu	37	chr21	46000518	46000518	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagtgagtgagtgtgtgagtGagtgaaggagggagtgagtg	22	0	0	6			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46000518	C	C	46000518	1	2	145	0	1	0	0	0	0	0	0	0	2146	1305	45	4		4	C21orf29	21	46000518	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	22289	46000518	2129377	1644	126345											
KRTAP10-12	386685	broad.mit.edu	37	chr21	46117901	46117901	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgccaggcatgtccccCagggccactgggcactatga	12	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46117901	A	A	46117901	1	1	145	0	1	0	0	0	0	0	0	0	8579	609	21	2		2	KRTAP10-12	21	46117901	3'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	117383	46117901	2011994	1645	126346											
COL18A1	80781	broad.mit.edu	37	chr21	46900494	46900494	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgaggaacaggccatGgacccccaagattcagctgg	12	13	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46900494	A	A	46900494	1	1	145	0	1	0	0	0	0	0	0	0	3707	1363	47	4		4	COL18A1	21	46900494	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	782593	46900494	1229401	1646	126347											
COL6A2	1292	broad.mit.edu	37	chr21	47548967	47548967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggccgagccacacacCcgctccacctgcatttcctc	7	20	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47548967	A	A	47548967	1	1	145	0	1	0	0	0	0	0	0	0	3732	638	22	2		2	COL6A2	21	47548967	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	648473	47548967	580928	1647	126348											
BCL2L13	23786	broad.mit.edu	37	chr22	18187564	18187564	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttaatgtttactttgtgtAgatccatttgtctattttat	6	4	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18187564	G	G	18187564	1	3	145	0	1	0	0	0	0	0	0	0	1376	435	15	5		5	BCL2L13	22	18187564	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08		18187564	33117002	1648	126349											
MICAL3	57553	broad.mit.edu	37	chr22	18362208	18362208	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacttaagctccatgcatatCgctctatttggacctactaa	5	11	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18362208	A	A	18362208	1	1	145	0	1	0	0	0	0	0	0	0	9664	899	31	3		3	MICAL3	22	18362208	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	174644	18362208	32942358	1649	126350											
DGCR14	8220	broad.mit.edu	37	chr22	19127517	19127517	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgggcagcggctccttctCctcctcctctccagcctctc	8	20	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19127517	T	T	19127517	3	4	145	1	0	0	0	0	1	0	0	0	4500	864	30	4	1037	4	DGCR14	22	19127517	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	765309	19127517	32177049	1650	126351											
SEPT5	5413	broad.mit.edu	37	chr22	19707369	19707369	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccacactggtccacagcctCttcctgacagacttgtacaa	6	15	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19707369	T	T	19707369	2	4	145	1	0	0	0	0	0	0	0	1	14180	900	32	4		4	SEPT5	22	19707369	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	579852	19707369	31597197	1651	126352											
ZNF70	7621	broad.mit.edu	37	chr22	24086231	24086231	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccttgccacactgacagCactcgtagggcttctcaccg	10	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24086231	T	T	24086231	3	4	145	1	0	0	0	0	1	0	0	0	18230	710	25	4	247	4	ZNF70	22	24086231	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	4378862	24086231	27218335	1652	126353											
CYTSA	23384	broad.mit.edu	37	chr22	24761387	24761387	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttcagaaaaaaaaaatctCaagaactcagtctaaaatgt	4	7	5	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24761387	G	G	24761387	1	3	145	0	1	0	0	0	0	0	0	0	4242	841	29	4		4	CYTSA	22	24761387	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	675156	24761387	26543179	1653	126354											
ADRBK2	157	broad.mit.edu	37	chr22	26099623	26099623	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataataaaaaaatgctattAcataaaatgttataggaaat	4	2	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26099623	G	G	26099623	1	3	145	0	1	0	0	0	0	0	0	0	344	406	14	5		5	ADRBK2	22	26099623	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	1338236	26099623	25204943	1654	126355											
MYO18B	84700	broad.mit.edu	37	chr22	26168354	26168354	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggcctctctcatcagtgtCaacgaatccagtgtcctgaa	8	13	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26168354	T	T	26168354	2	4	145	1	0	0	0	0	0	0	0	1	10160	813	29	4		4	MYO18B	22	26168354	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	68731	26168354	25136212	1655	126356											
HORMAD2	150280	broad.mit.edu	37	chr22	30533480	30533480	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcaagaccctgtttcaaaAaaggaaggaaggaagggagg	15	5	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30533480	C	C	30533480	1	2	145	0	1	0	0	0	0	0	0	0	7354	29	1	5		5	HORMAD2	22	30533480	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	4365126	30533480	20771086	1656	126357											
TBC1D10A	83874	broad.mit.edu	37	chr22	30688847	30688847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaactccaccacctgcagGggcagtgacacaggcaagtg	13	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30688847	T	T	30688847	1	4	145	0	1	0	0	0	0	0	0	0	15717	1247	43	2		2	TBC1D10A	22	30688847	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	155367	30688847	20615719	1657	126358											
SF3A1	10291	broad.mit.edu	37	chr22	30749096	30749096	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaataaggttttaaagTccctggttcagagcaggttc	10	6	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30749096	C	C	30749096	1	2	145	0	1	0	0	0	0	0	0	0	14259	1682	58	5		5	SF3A1	22	30749096	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	60249	30749096	20555470	1658	126359											
SEC14L4	284904	broad.mit.edu	37	chr22	30887627	30887627	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcattgtagcgctggctGggcagcacctccgtcatctc	13	13	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30887627	A	A	30887627	2	1	145	1	0	0	0	0	0	0	0	1	14097	1335	47	4		4	SEC14L4	22	30887627	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	138531	30887627	20416939	1659	126360											
SLC5A1	6523	broad.mit.edu	37	chr22	32477866	32477866	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttccaggcagacatcttctCgggggccatattcatcaatc	8	13	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32477866	A	A	32477866	4	1	145	1	0	0	0	0	0	1	0	0	14775	893	31	3	513	3	SLC5A1	22	32477866	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1590239	32477866	18826700	1660	126361											
C22orf42	150297	broad.mit.edu	37	chr22	32545832	32545832	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggccctgttggcacaggtcTattattcacttggtgacgta	12	9	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32545832	A	A	32545832	1	1	145	0	1	0	0	0	0	0	0	0	2171	1537	53	5		5	C22orf42	22	32545832	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	67966	32545832	18758734	1661	126362											
RFPL2	10739	broad.mit.edu	37	chr22	32590329	32590329	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacacacacaggcatgggctCacctcttctgctggaagctc	9	15	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32590329	A	A	32590329	1	1	145	0	1	0	0	0	0	0	0	0	13362	841	29	3		3	RFPL2	22	32590329	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	44497	32590329	18714237	1662	126363											
MCM5	4174	broad.mit.edu	37	chr22	35804341	35804341	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctggctcctgggatgaatGagccctgcctttggattctc	12	11	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35804341	A	A	35804341	1	1	145	0	1	0	0	0	0	0	0	0	9483	1305	45	4		4	MCM5	22	35804341	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	3214012	35804341	15500225	1663	126364											
CSF2RB	1439	broad.mit.edu	37	chr22	37334173	37334173	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccctccaattgagggcCggtcccccaggtcaccaagg	11	16	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37334173	A	A	37334173	2	1	145	1	0	0	0	0	0	0	0	1	3969	643	23	1		1	CSF2RB	22	37334173	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1529832	37334173	13970393	1664	126365											
GGA1	26088	broad.mit.edu	37	chr22	38026076	38026076	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaaagccgacccccagcGcagacatccctgccagcaag	10	16	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38026076	T	T	38026076	2	4	145	1	0	0	0	0	0	0	0	1	6416	1074	38	3		3	GGA1	22	38026076	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	691903	38026076	13278490	1665	126366											
CBX6	23466	broad.mit.edu	37	chr22	39262858	39262858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgaggggactttggggcGggccagcgccccggccccct	17	17	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39262858	T	T	39262858	3	4	145	1	0	0	0	0	1	0	0	0	2748	1116	39	1	647	1	CBX6	22	39262858	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	1236782	39262858	12041708	1666	126367											
APOBEC3B	9582	broad.mit.edu	37	chr22	39382006	39382006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaccatctctgccgccCgcctctactactactgggaa	7	18	2	1	rs144579352		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39382006	A	A	39382006	3	1	145	1	0	0	0	0	1	0	0	0	792	652	23	1	374	1	APOBEC3B	22	39382006	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	119148	39382006	11922560	1667	126368											
NHP2L1	4809	broad.mit.edu	37	chr22	42084837	42084837	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcactcctaggggagCgcagctgacgtttcagaagc	13	12	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42084837	T	T	42084837	1	4	145	0	1	0	0	0	0	0	0	0	10505	783	27	4		4	NHP2L1	22	42084837	5'UTR	SNP	C	TCGA-49-6743-01A-11D-1855-08	2702831	42084837	9219729	1668	126369											
MEI1	150365	broad.mit.edu	37	chr22	42180489	42180489	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttttcagataagaccagcAccctgaccagccaatggtca	9	12	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42180489	C	C	42180489	1	2	145	0	1	0	0	0	0	0	0	0	9558	174	6	5		5	MEI1	22	42180489	Intron	SNP	A	TCGA-49-6743-01A-11D-1855-08	95652	42180489	9124077	1669	126370											
POLDIP3	84271	broad.mit.edu	37	chr22	43010711	43010711	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgggggcgggcgcacccGgtcctccgcgtcgctcccgg	18	17	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43010711	C	C	43010711	1	2	145	0	1	0	0	0	0	0	0	0	12290	1131	39	4		4	POLDIP3	22	43010711	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	830222	43010711	8293855	1670	126371											
TTLL12	23170	broad.mit.edu	37	chr22	43572445	43572445	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagatgaggtcaaggaagGgagggaaaggccggccgtgg	20	5	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43572445	A	A	43572445	1	1	145	0	1	0	0	0	0	0	0	0	16851	1247	43	4		4	TTLL12	22	43572445	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	561734	43572445	7732121	1671	126372											
SAMM50	25813	broad.mit.edu	37	chr22	44368124	44368124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttatttaggtgatgacGcacttccaaatgggttagac	9	6	0	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44368124	T	T	44368124	3	4	145	1	0	0	0	0	1	0	0	0	13940	1087	38	3	349	3	SAMM50	22	44368124	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	795679	44368124	6936442	1672	126373											
SAMM50	25813	broad.mit.edu	37	chr22	44368860	44368860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtccttcttcaaaccacGgcccggaaacttcgaaagaa	7	14	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44368860	T	T	44368860	3	4	145	1	0	0	0	0	1	0	0	0	13940	1116	39	1	561	1	SAMM50	22	44368860	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	736	44368860	6935706	1673	126374											
KIAA1644	85352	broad.mit.edu	37	chr22	44692577	44692577	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtaaccctcggagctggCcgtgaggttcgcctgcatca	12	13	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44692577	G	G	44692577	3	3	145	1	0	0	0	0	1	0	0	0	8320	739	26	4	355	4	KIAA1644	22	44692577	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	323717	44692577	6611989	1674	126375											
ATXN10	25814	broad.mit.edu	37	chr22	46114409	46114409	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtggtctggagtatttagCattccatatagggtattcga	12	6	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46114409	T	T	46114409	1	4	145	0	1	0	0	0	0	0	0	0	1214	725	25	4		4	ATXN10	22	46114409	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	1421832	46114409	5190157	1675	126376											
PPARA	5465	broad.mit.edu	37	chr22	46594329	46594329	+	Frame_Shift_Del	DEL	G	-	-													ccctctccccactcgaggccGgcgatctagagagcccgtta					rs146169560		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46594329	-	-	46594329	7	5	145	1	0	1	0	1	0	0	0	0	12393	1116	39	0	51	0	PPARA	22	46594329	Frame_Shift_Del	DEL	G	TCGA-49-6743-01A-11D-1855-08	479920	46594329	4710237	1676	126377											
TBC1D22A	25771	broad.mit.edu	37	chr22	47433074	47433074	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccctgcgttgtaccatcCgcctgtgggacacctaccag	10	16	0	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47433074	T	T	47433074	3	4	145	1	0	0	0	0	1	0	0	0	15730	652	23	4	1351	4	TBC1D22A	22	47433074	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	838745	47433074	3871492	1677	126378											
CRELD2	79174	broad.mit.edu	37	chr22	50320944	50320944	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgacacagctgccctcccgcGaagacctgtaatgtgccgga	11	15	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50320944	A	A	50320944	3	1	145	1	0	0	0	0	1	0	0	0	3899	1059	37	4	1240	4	CRELD2	22	50320944	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2887870	50320944	983622	1678	126379											
MLC1	23209	broad.mit.edu	37	chr22	50515285	50515285	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttactgagtaagatttcagGacccgagcaggaaatggcac	11	9	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50515285	T	T	50515285	2	4	145	1	0	0	0	0	0	0	0	1	9705	1161	41	3		3	MLC1	22	50515285	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	194341	50515285	789281	1679	126380											
MOV10L1	54456	broad.mit.edu	37	chr22	50572981	50572981	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttccagaagaaattatTttacagtctccacaagtgac	6	8	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50572981	G	G	50572981	3	3	145	1	0	0	0	0	1	0	0	0	9813	1829	64	5	2091	5	MOV10L1	22	50572981	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	57696	50572981	731585	1680	126381											
PLXNB2	23654	broad.mit.edu	37	chr22	50719577	50719577	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggccctccagctgggacTtgatcttctcatactctcgt	8	15	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50719577	A	A	50719577	3	1	145	1	0	0	0	0	1	0	0	0	12219	1609	56	5	1872	5	PLXNB2	22	50719577	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	146596	50719577	584989	1681	126382											
PLXNB2	23654	broad.mit.edu	37	chr22	50727191	50727191	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtcctgggtcatggcgTacaggctgcccaggtctcca	12	14	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50727191	G	G	50727191	3	3	145	1	0	0	0	0	1	0	0	0	12219	1638	57	5	4287	5	PLXNB2	22	50727191	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	7614	50727191	577375	1682	126383											
SBF1	6305	broad.mit.edu	37	chr22	50893413	50893413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgggcccctcctgaccCgtggctgccccagccccgac	11	21	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50893413	A	A	50893413	1	1	145	0	1	0	0	0	0	0	0	0	13970	667	23	1		1	SBF1	22	50893413	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	166222	50893413	411153	1683	126384											
RABL2B	11158	broad.mit.edu	37	chr22	51208452	51208452	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacatcaaacacctgcaaaGggcagaggaagaaagatagc	11	8	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51208452	A	A	51208452	1	1	145	0	1	0	0	0	0	0	0	0	13079	1015	35	4		4	RABL2B	22	51208452	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	315039	51208452	96114	1684	126385											
SFRS17A	8227	broad.mit.edu	37	chrX	1720181	1720181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgggccaccggagacggGcttgctgaccggcacaagcg	17	14	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1720181	T	T	1720181	2	4	145	1	0	0	0	0	0	0	0	1	14286	1190	42	3		3	SFRS17A	23	1720181	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08		1720181	153550379	1685	126386											
KAL1	3730	broad.mit.edu	37	chrX	8503684	8503684	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgggtaggctgttctgtCtgctttccgtagtgacctca	12	9	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8503684	T	T	8503684	3	4	145	1	0	0	0	0	1	0	0	0	8044	913	32	4	264	4	KAL1	23	8503684	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	6783503	8503684	146766876	1686	126387											
MID1	4281	broad.mit.edu	37	chrX	10427696	10427696	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcacttactgtttgtcttCaacttcccaggctcactgct	6	14	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10427696	T	T	10427696	2	4	145	1	0	0	0	0	0	0	0	1	9669	825	29	4		4	MID1	23	10427696	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	1924012	10427696	144842864	1687	126388											
GLRA2	2742	broad.mit.edu	37	chrX	14599363	14599363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattcacggctggcgtacaGtgagtacccagatgactccc	11	12	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14599363	T	T	14599363	3	4	145	1	0	0	0	0	1	0	0	0	6519	1029	36	3	415	3	GLRA2	23	14599363	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	4171667	14599363	140671197	1688	126389											
CDKL5	6792	broad.mit.edu	37	chrX	18606354	18606354	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaatgctaaactatcctttGaatactatttcttttcccat	4	9	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18606354	A	A	18606354	1	1	145	0	1	0	0	0	0	0	0	0	3187	1305	45	4		4	CDKL5	23	18606354	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	4006991	18606354	136664206	1689	126390											
PPEF1	5475	broad.mit.edu	37	chrX	18842157	18842157	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaaatggaaacgttgaaTacatgtccagcttccagaat	7	9	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18842157	C	C	18842157	3	2	145	1	0	0	0	0	1	0	0	0	12403	1406	49	5	1672	5	PPEF1	23	18842157	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	235803	18842157	136428403	1690	126391											
PHKA2	5256	broad.mit.edu	37	chrX	18942356	18942356	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattaaaatatttctggcaTagaagattcccgagataaga	7	5	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18942356	C	C	18942356	1	2	145	0	1	0	0	0	0	0	0	0	11939	1421	49	5		5	PHKA2	23	18942356	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	100199	18942356	136328204	1691	126392											
PDHA1	5160	broad.mit.edu	37	chrX	19377730	19377730	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgacccaccttttgaagttCgtggtgccaatcagtggatc	11	11	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19377730	T	T	19377730	3	4	145	1	0	0	0	0	1	0	0	0	11758	884	31	4	1313	4	PDHA1	23	19377730	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	435374	19377730	135892830	1692	126393											
CNKSR2	22866	broad.mit.edu	37	chrX	21508641	21508641	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagatcctctggtttcacAgtctgctcacctggaagtga	10	11	5	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21508641	T	T	21508641	3	4	145	1	0	0	0	0	1	0	0	0	3639	188	7	5	648	5	CNKSR2	23	21508641	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	2130911	21508641	133761919	1693	126394											
POLA1	5422	broad.mit.edu	37	chrX	24742503	24742503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaactccaatttcaatgaagGatgtttatgaggaatttgat	9	4	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24742503	T	T	24742503	3	4	145	1	0	0	0	0	1	0	0	0	12282	1174	41	3	1280	3	POLA1	23	24742503	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3233862	24742503	130528057	1694	126395											
IL1RAPL1	11141	broad.mit.edu	37	chrX	28677497	28677497	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacccctccagtagagggCgcactcttgcaagcggcttt	10	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28677497	T	T	28677497	1	4	145	0	1	0	0	0	0	0	0	0	7731	783	27	4		4	IL1RAPL1	23	28677497	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3934994	28677497	126593063	1695	126396											
DMD	1756	broad.mit.edu	37	chrX	32407590	32407590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaaagtcaaggggtacCtgcgtatttgccaccagaaa	12	8	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32407590	A	A	32407590	1	1	145	0	1	0	0	0	0	0	0	0	4620	696	24	2		2	DMD	23	32407590	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3730093	32407590	122862970	1696	126397											
FAM47A	158724	broad.mit.edu	37	chrX	34150217	34150217	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcgggagacggacagccgTagcggaagtcgtccatgccc	14	13	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34150217	C	C	34150217	3	2	145	1	0	0	0	0	1	0	0	0	5620	1638	57	5	2200	5	FAM47A	23	34150217	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	1742627	34150217	121120343	1697	126398											
CACNA1F	778	broad.mit.edu	37	chrX	49083471	49083471	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggtcctccatgtccagctCttcggcttgagtgatccagt	12	12	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49083471	T	T	49083471	3	4	145	1	0	0	0	0	1	0	0	0	2569	922	32	4	4856	4	CACNA1F	23	49083471	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	14933254	49083471	106187089	1698	126399											
CCNB3	85417	broad.mit.edu	37	chrX	50052996	50052996	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagccactggtcttgcagaaGatcacttctgaggaggagtc	12	9	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50052996	C	C	50052996	3	2	145	1	0	0	0	0	1	0	0	0	2944	933	33	4	1841	4	CCNB3	23	50052996	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	969525	50052996	105217564	1699	126400											
GPR173	54328	broad.mit.edu	37	chrX	53106887	53106887	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgctggggcacaggaGgtgccccggctcccagagaa	14	16	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53106887	A	A	53106887	3	1	145	1	0	0	0	0	1	0	0	0	6736	1000	35	4	1086	4	GPR173	23	53106887	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3053891	53106887	102163673	1700	126401											
HUWE1	10075	broad.mit.edu	37	chrX	53634608	53634608	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgattcacaaattccTggcagtggtcatctgttgta	8	9	4	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53634608	A	A	53634608	3	1	145	1	0	0	0	0	1	0	0	0	7531	1580	55	5	10992	5	HUWE1	23	53634608	Missense_Mutation	SNP	T	TCGA-49-6743-01A-11D-1855-08	527721	53634608	101635952	1701	126402											
PFKFB1	5207	broad.mit.edu	37	chrX	54985242	54985242	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttctttggggtttgtgcTggagaaataggctctagata	12	6	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54985242	A	A	54985242	1	1	145	0	1	0	0	0	0	0	0	0	11855	1595	55	5		5	PFKFB1	23	54985242	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1350634	54985242	100285318	1702	126403											
HEPH	9843	broad.mit.edu	37	chrX	65427035	65427035	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtactctttggattcctctAgttatggttacattttcctg	7	8	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65427035	G	G	65427035	5	3	145	1	0	0	0	0	0	0	1	0	7121	434	15	5	2506	5	HEPH	23	65427035	Splice_Site	SNP	A	TCGA-49-6743-01A-11D-1855-08	10441793	65427035	89843525	1703	126404											
KIAA2022	340533	broad.mit.edu	37	chrX	73963423	73963423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcaaaagagtagtcttGtctcgaacattgtcctgaaa	8	8	3	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73963423	T	T	73963423	3	4	145	1	0	0	0	0	1	0	0	0	8339	1368	48	3	3589	3	KIAA2022	23	73963423	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	8536388	73963423	81307137	1704	126405											
ZDHHC15	158866	broad.mit.edu	37	chrX	74742846	74742846	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagacagagccatcttcCagcctcgccgcatctttggc	8	18	2	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74742846	T	T	74742846	4	4	145	1	0	0	0	0	0	1	0	0	17731	595	21	4	1123	4	ZDHHC15	23	74742846	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	779423	74742846	80527714	1705	126406											
PGK1	5230	broad.mit.edu	37	chrX	77381315	77381315	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcctggggtggatgctctCagcaatatttagtactttcc	9	10	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77381315	T	T	77381315	2	4	145	1	0	0	0	0	0	0	0	1	11885	813	29	4		4	PGK1	23	77381315	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	2638469	77381315	77889245	1706	126407											
CYSLTR1	10800	broad.mit.edu	37	chrX	77529230	77529230	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaagatactgtcagatttCctgtttcatccatgtttctc	6	10	3	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77529230	T	T	77529230	3	4	145	1	0	0	0	0	1	0	0	0	4234	855	30	4	1003	4	CYSLTR1	23	77529230	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	147915	77529230	77741330	1707	126408											
GPR174	84636	broad.mit.edu	37	chrX	78427094	78427094	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgattgggtttgtaactcCgcttctgattgtcctatatt	9	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78427094	T	T	78427094	3	4	145	1	0	0	0	0	1	0	0	0	6737	652	23	4	592	4	GPR174	23	78427094	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	897864	78427094	76843466	1708	126409											
TBX22	50945	broad.mit.edu	37	chrX	79286266	79286266	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtctttagccccactcAtgatggaagtgcctatgtta	8	11	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79286266	T	T	79286266	3	4	145	1	0	0	0	0	1	0	0	0	15780	217	8	5	1249	5	TBX22	23	79286266	Missense_Mutation	SNP	A	TCGA-49-6743-01A-11D-1855-08	859172	79286266	75984294	1709	126410											
CHM	1121	broad.mit.edu	37	chrX	85149332	85149332	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagacacagctgttagatctCattttcattcttctaacatt	4	10	4	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85149332	T	T	85149332	1	4	145	0	1	0	0	0	0	0	0	0	3381	841	29	4		4	CHM	23	85149332	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	5863066	85149332	70121228	1710	126411											
PABPC5	140886	broad.mit.edu	37	chrX	90690528	90690528	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcccatagcttagagaaAgcagccttttttctcttcaa	7	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90690528	G	G	90690528	1	3	145	0	1	0	0	0	0	0	0	0	11461	87	3	5		5	PABPC5	23	90690528	5'UTR	SNP	A	TCGA-49-6743-01A-11D-1855-08	5541196	90690528	64580032	1711	126412											
NAP1L3	4675	broad.mit.edu	37	chrX	92926978	92926978	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaatctcaggaggactaaaGaagttgaagaatgatgcatt	12	4	1	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92926978	A	A	92926978	2	1	145	1	0	0	0	0	0	0	0	1	10252	933	33	4		4	NAP1L3	23	92926978	Silent	SNP	G	TCGA-49-6743-01A-11D-1855-08	2236450	92926978	62343582	1712	126413											
DRP2	1821	broad.mit.edu	37	chrX	100509722	100509722	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggcctgagaagtagactgGaatccagtctttgtattttg	11	7	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100509722	T	T	100509722	1	4	145	0	1	0	0	0	0	0	0	0	4804	1189	41	3		3	DRP2	23	100509722	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	7582744	100509722	54760838	1713	126414											
TAF7L	54457	broad.mit.edu	37	chrX	100533868	100533868	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaggatgagggttagaggtGagaaggaaggctcaaaagta	16	2	1	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100533868	C	C	100533868	1	2	145	0	1	0	0	0	0	0	0	0	15652	1305	45	4		4	TAF7L	23	100533868	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	24146	100533868	54736692	1714	126415											
ESX1	80712	broad.mit.edu	37	chrX	103495448	103495448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaaagcaggatccagagCaggagcagcataataggccc	11	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103495448	A	A	103495448	3	1	145	1	0	0	0	0	1	0	0	0	5305	710	25	3	542	3	ESX1	23	103495448	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	2961580	103495448	51775112	1715	126416											
ESX1	80712	broad.mit.edu	37	chrX	103498885	103498885	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaaaaagttctctagctcCtgcagctgaaactgcgtgaa	9	10	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103498885	T	T	103498885	2	4	145	1	0	0	0	0	0	0	0	1	5305	680	24	4		4	ESX1	23	103498885	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	3437	103498885	51771675	1716	126417											
NRK	203447	broad.mit.edu	37	chrX	105179112	105179112	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattctgtaactccatcaTgcacagaactagtaatttcc	4	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105179112	G	G	105179112	1	3	145	0	1	0	0	0	0	0	0	0	10750	1479	51	5		5	NRK	23	105179112	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	1680227	105179112	50091448	1717	126418											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698577	111698577	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgatggacaatcttccagaCctgatcactcagtgcattca	7	11	4	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111698577	G	G	111698577	3	3	145	1	0	0	0	0	1	0	0	0	17710	506	18	4	623	4	ZCCHC16	23	111698577	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	6519465	111698577	43571983	1718	126419											
ATP1B4	23439	broad.mit.edu	37	chrX	119509178	119509178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgaacgcacggccttccCctgtagcacctgtctaacat	7	15	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119509178	A	A	119509178	1	1	145	0	1	0	0	0	0	0	0	0	1139	638	22	2		2	ATP1B4	23	119509178	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	7810601	119509178	35761382	1719	126420											
SH2D1A	4068	broad.mit.edu	37	chrX	123504071	123504071	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttccggaaaataaaaaatCtcatttcagcatttcagaag	5	7	3	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123504071	G	G	123504071	3	3	145	1	0	0	0	0	1	0	0	0	14343	913	32	4	257	4	SH2D1A	23	123504071	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	3994893	123504071	31766489	1720	126421											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685141	125685141	+	Intron	DEL	G	-	-													gcaaaaaaatgcagcatgaaGggcagtcgggcggaactgaa							TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125685141	-	-	125685141	6	5	145	0	1	1	0	1	0	0	0	0	4297	1015	35	0		0	DCAF12L1	23	125685141	Intron	DEL	G	TCGA-49-6743-01A-11D-1855-08	2181070	125685141	29585419	1721	126422											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685965	125685965	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgccgtcgcgggagccgctCacggctacggtgtcactcag	15	14	3	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125685965	A	A	125685965	2	1	145	1	0	0	0	0	0	0	0	1	4297	813	29	3		3	DCAF12L1	23	125685965	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	824	125685965	29584595	1722	126423											
BCORL1	63035	broad.mit.edu	37	chrX	129150034	129150034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgagtgaaacaggaaagcGtaggggtctttgcttgcaag	14	7	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129150034	T	T	129150034	3	4	145	1	0	0	0	0	1	0	0	0	1392	1145	40	3	3296	3	BCORL1	23	129150034	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	3464069	129150034	26120526	1723	126424											
MST4	51765	broad.mit.edu	37	chrX	131202484	131202484	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggagatgttaaacttgctGattttggagttgctggtcag	13	4	1	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131202484	A	A	131202484	3	1	145	1	0	0	0	0	1	0	0	0	9986	1290	45	4	502	4	MST4	23	131202484	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	2052450	131202484	24068076	1724	126425											
USP26	83844	broad.mit.edu	37	chrX	132161441	132161441	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaaccgtcactatacccttGttgtaacagaaataccaaaa	5	10	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132161441	C	C	132161441	3	2	145	1	0	0	0	0	1	0	0	0	17183	1386	48	4	1936	4	USP26	23	132161441	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	958957	132161441	23109119	1725	126426											
USP26	83844	broad.mit.edu	37	chrX	132162273	132162273	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttacaaataaaatatacGtatctccgattattgataat	3	6	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132162273	A	A	132162273	1	1	145	1	0	0	0	0	0	0	0	0	17183	1160	40	4		4	USP26	23	132162273	Translation_Start_Site	SNP	G	TCGA-49-6743-01A-11D-1855-08	832	132162273	23108287	1726	126427											
FHL1	2273	broad.mit.edu	37	chrX	135290815	135290815	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcactggtaggctaaagagtCcttgctaagtctgccaggct	11	10	2	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135290815	A	A	135290815	1	1	145	0	1	0	0	0	0	0	0	0	5935	870	30	3		3	FHL1	23	135290815	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	3128542	135290815	19979745	1727	126428											
ARHGEF6	9459	broad.mit.edu	37	chrX	135770132	135770132	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattgctttcagaatatcctGatgatctggatgagtatcct	9	7	2	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135770132	T	T	135770132	3	4	145	1	0	0	0	0	1	0	0	0	912	1299	45	3	1174	3	ARHGEF6	23	135770132	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	479317	135770132	19500428	1728	126429											
MCF2	4168	broad.mit.edu	37	chrX	138686914	138686914	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgctcaagaaaatgctgtGaaaatttcagagaaaaaaaa	8	5	2	3			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138686914	A	A	138686914	1	1	145	0	1	0	0	0	0	0	0	0	9471	1305	45	4		4	MCF2	23	138686914	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	2916782	138686914	16583646	1729	126430											
ATP11C	286410	broad.mit.edu	37	chrX	138823100	138823100	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatatagtgtacatacacaTgtatctactttgctatttac	4	7	1	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138823100	C	C	138823100	1	2	145	0	1	0	0	0	0	0	0	0	1125	1479	51	5		5	ATP11C	23	138823100	Intron	SNP	T	TCGA-49-6743-01A-11D-1855-08	136186	138823100	16447460	1730	126431											
CDR1	1038	broad.mit.edu	37	chrX	139865924	139865924	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaaaaaatccaggtcttcCagccaatatatgtcttcctg	7	11	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139865924	T	T	139865924	4	4	145	1	0	0	0	0	0	1	0	0	3201	595	21	4	184	4	CDR1	23	139865924	Nonsense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1042824	139865924	15404636	1731	126432											
SPANXN1	494118	broad.mit.edu	37	chrX	144337134	144337134	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agccccccttgctatccagtCtctatcctattcacccaaaa	3	17	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144337134	A	A	144337134	1	1	145	0	1	0	0	0	0	0	0	0	15106	928	32	3		3	SPANXN1	23	144337134	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	4471210	144337134	10933426	1732	126433											
CD99L2	83692	broad.mit.edu	37	chrX	149962106	149962106	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcaattaatctggttgctGcataatcacctttttcacca	5	11	4	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149962106	A	A	149962106	1	1	145	0	1	0	0	0	0	0	0	0	3081	1334	46	4		4	CD99L2	23	149962106	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	5624972	149962106	5308454	1733	126434											
PASD1	139135	broad.mit.edu	37	chrX	150832647	150832647	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaatccattgtacagggcaGacccagtggacctggagttc	12	10	0	2			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150832647	T	T	150832647	3	4	145	1	0	0	0	0	1	0	0	0	11565	942	33	3	936	3	PASD1	23	150832647	Missense_Mutation	SNP	G	TCGA-49-6743-01A-11D-1855-08	870541	150832647	4437913	1734	126435											
GABRA3	2556	broad.mit.edu	37	chrX	151562843	151562843	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaaaacagagcagaaaaatGagtggctttgttccagaagc	10	6	0	4			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151562843	A	A	151562843	1	1	145	0	1	0	0	0	0	0	0	0	6222	1305	45	4		4	GABRA3	23	151562843	Intron	SNP	G	TCGA-49-6743-01A-11D-1855-08	730196	151562843	3707717	1735	126436											
MAGEA6	4105	broad.mit.edu	37	chrX	151870085	151870085	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaactacctggagtacCggcaggtccccggcagtgat	13	11	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151870085	A	A	151870085	2	1	145	1	0	0	0	0	0	0	0	1	9260	643	23	1		1	MAGEA6	23	151870085	Silent	SNP	C	TCGA-49-6743-01A-11D-1855-08	307242	151870085	3400475	1736	126437											
SRPK3	26576	broad.mit.edu	37	chrX	153049512	153049512	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccagagcaggtccctccCcagcctcttcctcccccgcc	8	23	1	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153049512	T	T	153049512	3	4	145	1	0	0	0	0	1	0	0	0	15279	623	22	4	1029	4	SRPK3	23	153049512	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	1179427	153049512	2221048	1737	126438											
L1CAM	3897	broad.mit.edu	37	chrX	153130793	153130793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaactcgctggcgggccCcgatcctcgcccgttaaagg	14	14	0	1			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153130793	A	A	153130793	3	1	145	1	0	0	0	0	1	0	0	0	8660	623	22	2	1099	2	L1CAM	23	153130793	Missense_Mutation	SNP	C	TCGA-49-6743-01A-11D-1855-08	81281	153130793	2139767	1738	126439											
L1CAM	3897	broad.mit.edu	37	chrX	153138665	153138665	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccttctgggaaacactctCacccctccccaacttaccat	5	18	2	0			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153138665	T	T	153138665	1	4	145	0	1	0	0	0	0	0	0	0	8660	841	29	4		4	L1CAM	23	153138665	Intron	SNP	C	TCGA-49-6743-01A-11D-1855-08	7872	153138665	2131895	1739	126440											
PTCHD2	57540	broad.mit.edu	37	chr1	11561297	11561297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctcttcctgggctgcaGcatccccatggccctgtcag	12	15	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11561297	T	T	11561297	3	4	146	1	0	0	0	0	1	0	0	0	12839	971	34	3	250	3	PTCHD2	1	11561297	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08		11561297	237689324	1	126441											
PRAMEF1	65121	broad.mit.edu	37	chr1	12853778	12853778	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttctgatggtgttggcgAggaagatcagggaggctttg	17	5	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12853778	T	T	12853778	1	4	146	0	1	0	0	0	0	0	0	0	12526	319	11	5		5	PRAMEF1	1	12853778	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	1292481	12853778	236396843	2	126442											
CLCNKB	1188	broad.mit.edu	37	chr1	16377113	16377113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggtaaggggccttgagtgGggtggcaggagtggggaagc	23	5	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16377113	T	T	16377113	1	4	146	0	1	0	0	0	0	0	0	0	3501	1247	43	2		2	CLCNKB	1	16377113	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	3523335	16377113	232873508	3	126443											
KIAA0090	23065	broad.mit.edu	37	chr1	19571335	19571335	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcaggaatcagccaggcaGagttggcaatggtaagtctt	12	7	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19571335	A	A	19571335	1	1	146	0	1	0	0	0	0	0	0	0	8223	957	33	4		4	KIAA0090	1	19571335	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	3194222	19571335	229679286	4	126444											
NBPF3	84224	broad.mit.edu	37	chr1	21808027	21808027	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgctacccatgaaatcTagttggggctctgtggtgtc	11	9	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21808027	C	C	21808027	1	2	146	0	1	0	0	0	0	0	0	0	10292	1537	53	5		5	NBPF3	1	21808027	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	2236692	21808027	227442594	5	126445											
PHACTR4	65979	broad.mit.edu	37	chr1	28800397	28800397	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctacaccaggagattccCcagcaggaagatcagaaaaa	9	10	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28800397	A	A	28800397	2	1	146	1	0	0	0	0	0	0	0	1	11907	610	22	2		2	PHACTR4	1	28800397	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	6992370	28800397	220450224	6	126446											
MECR	51102	broad.mit.edu	37	chr1	29533255	29533255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaccctggcctgctcccCcaacctgtgggttcctacct	9	18	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29533255	A	A	29533255	1	1	146	0	1	0	0	0	0	0	0	0	9517	638	22	2		2	MECR	1	29533255	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	732858	29533255	219717366	7	126447											
PTPRU	10076	broad.mit.edu	37	chr1	29606079	29606079	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtcttctccaacctgcacCcaggcaccacctacctgttc	5	18	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29606079	T	T	29606079	3	4	146	1	0	0	0	0	1	0	0	0	12921	623	22	4	1713	4	PTPRU	1	29606079	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	72824	29606079	219644542	8	126448											
COL16A1	1307	broad.mit.edu	37	chr1	32163648	32163648	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacgtccagccacactcagCatcagcttgtgccaacgcaa	7	16	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32163648	T	T	32163648	3	4	146	1	0	0	0	0	1	0	0	0	3705	710	25	4	4562	4	COL16A1	1	32163648	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2557569	32163648	217086973	9	126449											
PTP4A2	8073	broad.mit.edu	37	chr1	32375638	32375638	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaaaaacttcatactcaCtgtcttataaactgaactgc	3	11	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32375638	A	A	32375638	5	1	146	1	0	0	0	0	0	0	1	0	12877	579	20	3	115	3	PTP4A2	1	32375638	Splice_Site	SNP	C	TCGA-49-6744-01A-11D-1855-08	211990	32375638	216874983	10	126450											
NT5C1A	84618	broad.mit.edu	37	chr1	40137520	40137520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccaagagacttatgacCcctcctccggggtaaccctt	7	16	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40137520	A	A	40137520	1	1	146	0	1	0	0	0	0	0	0	0	10780	638	22	2		2	NT5C1A	1	40137520	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	7761882	40137520	209113101	11	126451											
PPIE	10450	broad.mit.edu	37	chr1	40206971	40206971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtaactgacttcactttGtgaccatcctgtttcttccc	5	13	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40206971	T	T	40206971	1	4	146	0	1	0	0	0	0	0	0	0	12423	1392	48	3		3	PPIE	1	40206971	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	69451	40206971	209043650	12	126452											
COL9A2	1298	broad.mit.edu	37	chr1	40779956	40779956	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcccttgaaaacagagatgGaacaaacatgagccagagga	11	8	0	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40779956	A	A	40779956	1	1	146	0	1	0	0	0	0	0	0	0	3740	1189	41	4		4	COL9A2	1	40779956	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	572985	40779956	208470665	13	126453											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43632904	43632904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaagaacctccgtttgCacctgtgatatgaacacaag	8	10	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43632904	A	A	43632904	2	1	146	1	0	0	0	0	0	0	0	1	4925	697	25	3		3	EBNA1BP2	1	43632904	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	2852948	43632904	205617717	14	126454											
KLF17	128209	broad.mit.edu	37	chr1	44584645	44584645	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagccggtggcaggcggcGcaccaggctgcccaggtgag	18	13	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44584645	T	T	44584645	2	4	146	1	0	0	0	0	0	0	0	1	8416	1074	38	3		3	KLF17	1	44584645	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	951741	44584645	204665976	15	126455											
KIF2C	11004	broad.mit.edu	37	chr1	45213045	45213045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcattgaaacttttacttGctccttgcagattgattttg	6	7	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45213045	T	T	45213045	1	4	146	0	1	0	0	0	0	0	0	0	8369	1334	46	3		3	KIF2C	1	45213045	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	628400	45213045	204037576	16	126456											
FAF1	11124	broad.mit.edu	37	chr1	51121144	51121144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcagaagttggccagccCtcccataattggtggcgaac	12	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51121144	A	A	51121144	3	1	146	1	0	0	0	0	1	0	0	0	5415	680	24	2	1286	2	FAF1	1	51121144	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	5908099	51121144	198129477	17	126457											
INADL	10207	broad.mit.edu	37	chr1	62614075	62614075	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacacagagtgagtatttcaGatgcagagggcctattatgc	12	7	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62614075	T	T	62614075	1	4	146	0	1	0	0	0	0	0	0	0	7801	957	33	3		3	INADL	1	62614075	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	11492931	62614075	186636546	18	126458											
EFCAB7	84455	broad.mit.edu	37	chr1	63998406	63998406	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggctgatgtaaatgctgaTggcaaatttgactacatcaa	9	6	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63998406	A	A	63998406	3	1	146	1	0	0	0	0	1	0	0	0	4980	1461	51	5	475	5	EFCAB7	1	63998406	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	1384331	63998406	185252215	19	126459											
SGIP1	84251	broad.mit.edu	37	chr1	67105424	67105424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgtttttattcaaatGttttccttctaaattcattt	2	8	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67105424	T	T	67105424	1	4	146	0	1	0	0	0	0	0	0	0	14319	1392	48	3		3	SGIP1	1	67105424	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	3107018	67105424	182145197	20	126460											
MIER1	57708	broad.mit.edu	37	chr1	67391953	67391953	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtacacttggagattaaGggagggaaaatccaaactcc	13	7	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67391953	A	A	67391953	1	1	146	0	1	0	0	0	0	0	0	0	9673	1015	35	4		4	MIER1	1	67391953	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	286529	67391953	181858668	21	126461											
MCOLN3	55283	broad.mit.edu	37	chr1	85498261	85498261	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgcttcccttatgcacAttcaagtgaaaacatcctat	4	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85498261	G	G	85498261	1	3	146	0	1	0	0	0	0	0	0	0	9490	232	8	5		5	MCOLN3	1	85498261	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	18106308	85498261	163752360	22	126462											
CLCA1	1179	broad.mit.edu	37	chr1	86954792	86954792	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaacaaagtggtgccatcatCcacacagtcgctttggggcc	10	12	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86954792	A	A	86954792	2	1	146	1	0	0	0	0	0	0	0	1	3488	845	30	3		3	CLCA1	1	86954792	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	1456531	86954792	162295829	23	126463											
FAM102B	284611	broad.mit.edu	37	chr1	109158962	109158962	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgtgaaggaagcatttTataattttttataatcgtga	9	3	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109158962	C	C	109158962	1	2	146	0	1	0	0	0	0	0	0	0	5429	1769	61	5		5	FAM102B	1	109158962	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	22204170	109158962	140091659	24	126464											
SORT1	6272	broad.mit.edu	37	chr1	109888320	109888320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaataaagagaatctataCgagagatatttgcagaaata	8	3	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109888320	A	A	109888320	1	1	146	0	1	0	0	0	0	0	0	0	15049	551	19	3		3	SORT1	1	109888320	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	729358	109888320	139362301	25	126465											
AMPD1	270	broad.mit.edu	37	chr1	115231538	115231538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttagtgggtttctgtgtGggtaccttgaaaatatgctc	11	6	1	1	rs80270587	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115231538	T	T	115231538	1	4	146	0	1	0	0	0	0	0	0	0	585	1363	47	2		2	AMPD1	1	115231538	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	5343218	115231538	134019083	26	126466											
SPAG17	200162	broad.mit.edu	37	chr1	118566053	118566053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaataagacctgaattggGactcctgctcacagcaccat	7	12	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118566053	T	T	118566053	3	4	146	1	0	0	0	0	1	0	0	0	15095	1174	41	3	2812	3	SPAG17	1	118566053	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3334515	118566053	130684568	27	126467											
NBPF10	100132406	broad.mit.edu	37	chr1	145440555	145440555	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagggtggcttcagcagaGaaattgttcatctgttacca	11	8	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145440555	A	A	145440555	1	1	146	0	1	0	0	0	0	0	0	0	10287	957	33	4		4	NBPF10	1	145440555	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	26874502	145440555	103810066	28	126468											
ITGA10	8515	broad.mit.edu	37	chr1	145536120	145536120	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggaatgtcacttgtgagCagctacacttccatgtgctg	12	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145536120	T	T	145536120	4	4	146	1	0	0	0	0	0	1	0	0	7943	711	25	4	2278	4	ITGA10	1	145536120	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	95565	145536120	103714501	29	126469											
PIAS3	10401	broad.mit.edu	37	chr1	145580301	145580301	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaacaccattgtggtcaaTtggtcatctgagttcggacg	10	11	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145580301	C	C	145580301	2	2	146	1	0	0	0	0	0	0	0	1	11972	1490	52	5		5	PIAS3	1	145580301	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	44181	145580301	103670320	30	126470											
HIST2H3D	653604	broad.mit.edu	37	chr1	149785214	149785214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgccggtcgacttgcggGcagtctgcttagtacgggcc	15	13	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149785214	A	A	149785214	3	1	146	1	0	0	0	0	1	0	0	0	7248	1203	42	4	389	4	HIST2H3D	1	149785214	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	4204913	149785214	99465407	31	126471											
FLG	2312	broad.mit.edu	37	chr1	152283027	152283027	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagactgttcatgagagctCacctggtagaggaaagacct	11	9	3	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152283027	T	T	152283027	2	4	146	1	0	0	0	0	0	0	0	1	5979	813	29	4		4	FLG	1	152283027	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	2497813	152283027	96967594	32	126472											
FLG2	388698	broad.mit.edu	37	chr1	152328814	152328814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggactgacctgagccagacCcatgttgtccaaagccagat	10	12	0	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152328814	A	A	152328814	3	1	146	1	0	0	0	0	1	0	0	0	5980	623	22	2	5731	2	FLG2	1	152328814	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	45787	152328814	96921807	33	126473											
PEAR1	375033	broad.mit.edu	37	chr1	156878710	156878710	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgctcaccctctttcagggCcctcactgtgctagtctttg	8	16	5	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156878710	G	G	156878710	2	3	146	1	0	0	0	0	0	0	0	1	11806	726	26	4		4	PEAR1	1	156878710	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	4549896	156878710	92371911	34	126474											
FCRL3	115352	broad.mit.edu	37	chr1	157665024	157665024	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagtgggaagtctattGggatatcaaccagcaaatag	12	5	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157665024	T	T	157665024	1	4	146	0	1	0	0	0	0	0	0	0	5853	1363	47	2		2	FCRL3	1	157665024	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	786314	157665024	91585597	35	126475											
PIGM	93183	broad.mit.edu	37	chr1	160001510	160001510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcaggagccattcgcccCagtgcttggtggagcccatg	13	12	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160001510	A	A	160001510	3	1	146	1	0	0	0	0	1	0	0	0	11987	595	21	2	1255	2	PIGM	1	160001510	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2336486	160001510	89249111	36	126476											
USP21	27005	broad.mit.edu	37	chr1	161133556	161133556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagttgattaggagtgttGgtagtgggaaaggaagggtc	18	1	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161133556	T	T	161133556	1	4	146	0	1	0	0	0	0	0	0	0	17179	1363	47	2		2	USP21	1	161133556	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1132046	161133556	88117065	37	126477											
TMCO1	54499	broad.mit.edu	37	chr1	165737881	165737881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccggggcccttcctcccGgggactgatcaaacgtctga	11	16	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165737881	T	T	165737881	1	4	146	0	1	0	0	0	0	0	0	0	16118	1131	39	1		1	TMCO1	1	165737881	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	4604325	165737881	83512740	38	126478											
DUSP27	92235	broad.mit.edu	37	chr1	167095997	167095997	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaggacaagctcactgcCctggaaagatggaagatcaa	10	9	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167095997	A	A	167095997	2	1	146	1	0	0	0	0	0	0	0	1	4864	610	22	2		2	DUSP27	1	167095997	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	1358116	167095997	82154624	39	126479											
CD247	919	broad.mit.edu	37	chr1	167401003	167401003	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctggcgtgaaagcaaatcaGaaaacaaagagtgggtcagt	12	7	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167401003	C	C	167401003	1	2	146	0	1	0	0	0	0	0	0	0	3018	957	33	4		4	CD247	1	167401003	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	305006	167401003	81849618	40	126480											
F5	2153	broad.mit.edu	37	chr1	169511383	169511383	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagaggggtgctttctcccCaagcacgtgaggcattctgg	13	11	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169511383	T	T	169511383	4	4	146	1	0	0	0	0	0	1	0	0	5391	595	21	4	3781	4	F5	1	169511383	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2110380	169511383	79739238	41	126481											
C1orf129	80133	broad.mit.edu	37	chr1	170961380	170961380	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgctgaagacaatcttattGatactgaaaggaaagcctgg	11	6	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170961380	C	C	170961380	3	2	146	1	0	0	0	0	1	0	0	0	2016	1281	45	4	1146	4	C1orf129	1	170961380	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1449997	170961380	78289241	42	126482											
FMO2	2327	broad.mit.edu	37	chr1	171154954	171154954	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccacttgctttgagagaacTgaagatattggaggagtgtg	13	6	0	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171154954	G	G	171154954	2	3	146	1	0	0	0	0	0	0	0	1	6013	1567	55	5		5	FMO2	1	171154954	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	193574	171154954	78095667	43	126483											
FASLG	356	broad.mit.edu	37	chr1	172633533	172633533	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtggcccatttaacaggtCtgtatctggaaggtacaggt	12	7	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172633533	A	A	172633533	1	1	146	0	1	0	0	0	0	0	0	0	5739	928	32	3		3	FASLG	1	172633533	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1478579	172633533	76617088	44	126484											
SLC9A11	284525	broad.mit.edu	37	chr1	173517545	173517545	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaggaatgtattcgatccTcgttttatcttctactaagg	7	9	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173517545	C	C	173517545	3	2	146	1	0	0	0	0	1	0	0	0	14825	1550	54	5	1998	5	SLC9A11	1	173517545	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	884012	173517545	75733076	45	126485											
RC3H1	149041	broad.mit.edu	37	chr1	173930234	173930234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcttccggatgaaaggtaGgaggcaaggttggtgaaggt	16	5	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173930234	A	A	173930234	3	1	146	1	0	0	0	0	1	0	0	0	13274	1000	35	4	1082	4	RC3H1	1	173930234	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	412689	173930234	75320387	46	126486											
PAPPA2	60676	broad.mit.edu	37	chr1	176525866	176525866	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggggatagtcctattggGcaatctgagctgctgggaga	16	6	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176525866	A	A	176525866	2	1	146	1	0	0	0	0	0	0	0	1	11527	1190	42	4		4	PAPPA2	1	176525866	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	2595632	176525866	72724755	47	126487											
PAPPA2	60676	broad.mit.edu	37	chr1	176809426	176809426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagtgagagaacctggGgatgggggaggcagtggctt	21	4	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176809426	T	T	176809426	1	4	146	0	1	0	0	0	0	0	0	0	11527	1247	43	2		2	PAPPA2	1	176809426	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	283560	176809426	72441195	48	126488											
ASTN1	460	broad.mit.edu	37	chr1	176845741	176845741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgcttggcctggagcgcCgtcctgtgttgtccactccc	12	16	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176845741	A	A	176845741	3	1	146	1	0	0	0	0	1	0	0	0	1068	652	23	1	505	1	ASTN1	1	176845741	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	36315	176845741	72404880	49	126489											
TDRD5	163589	broad.mit.edu	37	chr1	179562702	179562702	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacctagtatttattctGgaccgagatctcatcggcga	10	9	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179562702	T	T	179562702	4	4	146	1	0	0	0	0	0	1	0	0	15855	1349	47	2	346	2	TDRD5	1	179562702	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	2716961	179562702	69687919	50	126490											
TDRD5	163589	broad.mit.edu	37	chr1	179603746	179603746	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagaagcctaatctggtGgtaaagcctttacagctggt	11	8	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179603746	T	T	179603746	2	4	146	1	0	0	0	0	0	0	0	1	15855	1335	47	2		2	TDRD5	1	179603746	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	41044	179603746	69646875	51	126491											
HMCN1	83872	broad.mit.edu	37	chr1	186122916	186122916	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacattcaaacaggtcctgGgcagctgtacgcctactcaa	8	13	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186122916	A	A	186122916	3	1	146	1	0	0	0	0	1	0	0	0	7287	1232	43	4	15439	4	HMCN1	1	186122916	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	6519170	186122916	63127705	52	126492											
TPR	7175	broad.mit.edu	37	chr1	186324979	186324979	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgcttctttgcaaataCactattatcaaataaacaag	3	8	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186324979	G	G	186324979	1	3	146	0	1	0	0	0	0	0	0	0	16540	493	17	4		4	TPR	1	186324979	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	202063	186324979	62925642	53	126493											
PTGS2	5743	broad.mit.edu	37	chr1	186645168	186645168	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcaggcagaaggggatgCcagtgatagagggtgttaaa	17	4	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186645168	G	G	186645168	3	3	146	1	0	0	0	0	1	0	0	0	12862	740	26	4	707	4	PTGS2	1	186645168	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	320189	186645168	62605453	54	126494											
UCHL5	51377	broad.mit.edu	37	chr1	192992151	192992151	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacatactattaccttgatCtgtatccatgggttcctcct	5	11	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192992151	T	T	192992151	3	4	146	1	0	0	0	0	1	0	0	0	17048	913	32	4	250	4	UCHL5	1	192992151	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6346983	192992151	56258470	55	126495											
DDX59	83479	broad.mit.edu	37	chr1	200635159	200635159	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaatgtctcttcccagaagtCccacaggaatcatctgcatt	7	12	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200635159	T	T	200635159	3	4	146	1	0	0	0	0	1	0	0	0	4409	855	30	4	1177	4	DDX59	1	200635159	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	7643008	200635159	48615462	56	126496											
KIF21B	23046	broad.mit.edu	37	chr1	200969614	200969614	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcctccatggagctggcaGggctgcccccgaaggccggg	15	15	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200969614	A	A	200969614	3	1	146	1	0	0	0	0	1	0	0	0	8359	1000	35	4	3381	4	KIF21B	1	200969614	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	334455	200969614	48281007	57	126497											
NAV1	89796	broad.mit.edu	37	chr1	201754309	201754309	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggtttctagagctaaagcAggtcatagtttgatgtcctg	11	6	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201754309	T	T	201754309	1	4	146	0	1	0	0	0	0	0	0	0	10277	203	7	5		5	NAV1	1	201754309	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	784695	201754309	47496312	58	126498											
KDM5B	10765	broad.mit.edu	37	chr1	202743891	202743891	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaaagaattgagttttcatCtcatttagcttattttaaag	5	5	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202743891	G	G	202743891	1	3	146	0	1	0	0	0	0	0	0	0	8204	928	32	4		4	KDM5B	1	202743891	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	989582	202743891	46506730	59	126499											
PPP1R15B	84919	broad.mit.edu	37	chr1	204379882	204379882	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagggttcagcaaataggAtaccacactgaaattgtcta	10	7	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204379882	T	T	204379882	3	4	146	1	0	0	0	0	1	0	0	0	12465	333	12	5	1491	5	PPP1R15B	1	204379882	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	1635991	204379882	44870739	60	126500											
NFASC	23114	broad.mit.edu	37	chr1	204956704	204956704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttctcttagataatctGggaaccagaaaccccattct	5	13	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204956704	T	T	204956704	1	4	146	0	1	0	0	0	0	0	0	0	10454	1363	47	2		2	NFASC	1	204956704	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	576822	204956704	44293917	61	126501											
LOC642587	642587	broad.mit.edu	37	chr1	209603910	209603910	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagagcggggtgccgagggtCtggagggagaagaattgact	19	5	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209603910	A	A	209603910	1	1	146	0	1	0	0	0	0	0	0	0	8965	928	32	3		3	LOC642587	1	209603910	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	4647206	209603910	39646711	62	126502											
PTPN14	5784	broad.mit.edu	37	chr1	214705803	214705803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaagaccacctggcctcCtacctggacagactgaggag	11	13	0	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214705803	A	A	214705803	1	1	146	0	1	0	0	0	0	0	0	0	12889	696	24	2		2	PTPN14	1	214705803	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	5101893	214705803	34544818	63	126503											
USH2A	7399	broad.mit.edu	37	chr1	216172314	216172314	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtactgttatagatgacaCtccaaattgtaaaatcatgt	6	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216172314	G	G	216172314	3	3	146	1	0	0	0	0	1	0	0	0	17162	565	20	4	9192	4	USH2A	1	216172314	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1466511	216172314	33078307	64	126504											
USH2A	7399	broad.mit.edu	37	chr1	216270427	216270427	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttatgatttctcatttacctGaggatcaaaaagaaaataaa	5	5	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216270427	T	T	216270427	3	4	146	1	0	0	0	0	1	0	0	0	17162	1299	45	3	11056	3	USH2A	1	216270427	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	98113	216270427	32980194	65	126505											
USH2A	7399	broad.mit.edu	37	chr1	216595317	216595317	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaacttgcagaattgctaTgggcgttaggatgcagatca	11	6	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216595317	C	C	216595317	3	2	146	1	0	0	0	0	1	0	0	0	17162	1464	51	5	15544	5	USH2A	1	216595317	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	324890	216595317	32655304	66	126506											
ENAH	55740	broad.mit.edu	37	chr1	225685404	225685404	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcataaatgtaggggtttgcTgttgtgaacagttgttgttt	12	3	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225685404	A	A	225685404	1	1	146	0	1	0	0	0	0	0	0	0	5153	1595	55	5		5	ENAH	1	225685404	3'UTR	SNP	T	TCGA-49-6744-01A-11D-1855-08	9090087	225685404	23565217	67	126507											
HEATR1	55127	broad.mit.edu	37	chr1	236730018	236730018	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaagatgaggagaatccaGaggaatttctctgcacccag	11	9	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236730018	A	A	236730018	2	1	146	1	0	0	0	0	0	0	0	1	7094	929	33	4		4	HEATR1	1	236730018	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	11044614	236730018	12520603	68	126508											
RYR2	6262	broad.mit.edu	37	chr1	237504964	237504964	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagtaaggaaatatttgctGactggagggactgcaagatg	14	4	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237504964	T	T	237504964	1	4	146	0	1	0	0	0	0	0	0	0	13880	1305	45	3		3	RYR2	1	237504964	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	774946	237504964	11745657	69	126509											
RYR2	6262	broad.mit.edu	37	chr1	237843805	237843805	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaccatcgtttatactTcttatctgcagcaagcagac	5	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237843805	G	G	237843805	3	3	146	1	0	0	0	0	1	0	0	0	13880	1783	62	5	9191	5	RYR2	1	237843805	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	338841	237843805	11406816	70	126510											
RYR2	6262	broad.mit.edu	37	chr1	237881857	237881857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttaagccacatttactaCctatacattagttaatctct	2	10	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237881857	A	A	237881857	1	1	146	0	1	0	0	0	0	0	0	0	13880	522	18	3		3	RYR2	1	237881857	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	38052	237881857	11368764	71	126511											
RYR2	6262	broad.mit.edu	37	chr1	237886560	237886560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctttttcatcttgaaCaggtcaggctttgtgtcaat	9	7	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237886560	A	A	237886560	3	1	146	1	0	0	0	0	1	0	0	0	13880	479	17	3	10981	3	RYR2	1	237886560	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4703	237886560	11364061	72	126512											
FH	2271	broad.mit.edu	37	chr1	241661365	241661365	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttacttgatattgatgcTatatgggcctcttaaatgac	8	6	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241661365	A	A	241661365	1	1	146	0	1	0	0	0	0	0	0	0	5932	1537	53	5		5	FH	1	241661365	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	3774805	241661365	7589256	73	126513											
WDR64	128025	broad.mit.edu	37	chr1	241913018	241913018	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcaacgggactatcaaaatGatccaggtttacaatcccac	7	12	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241913018	T	T	241913018	3	4	146	1	0	0	0	0	1	0	0	0	17442	1290	45	3	1784	3	WDR64	1	241913018	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	251653	241913018	7337603	74	126514											
SMYD3	64754	broad.mit.edu	37	chr1	246493833	246493833	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgattctgaaggtgctcCatccatctgtgaaggaaaag	10	9	3	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246493833	T	T	246493833	3	4	146	1	0	0	0	0	1	0	0	0	14937	603	21	4	979	4	SMYD3	1	246493833	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4580815	246493833	2756788	75	126515											
OR14A16	284532	broad.mit.edu	37	chr1	247978621	247978621	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctctttggacacaggtGctcctgtccatgatgacatc	11	11	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247978621	T	T	247978621	3	4	146	1	0	0	0	0	1	0	0	0	11039	1310	46	3	522	3	OR14A16	1	247978621	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1484788	247978621	1272000	76	126516											
OR2M4	26245	broad.mit.edu	37	chr1	248402509	248402509	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggaagaaatctatctcTctggcaggttgtggaactca	11	8	5	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248402509	C	C	248402509	2	2	146	1	0	0	0	0	0	0	0	1	11106	1538	54	5		5	OR2M4	1	248402509	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	423888	248402509	848112	77	126517											
OR2T33	391195	broad.mit.edu	37	chr1	248437125	248437125	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatctccataatttcccCtggtgtgatggtgcaaatgg	9	10	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248437125	A	A	248437125	1	1	146	0	1	0	0	0	0	0	0	0	11118	696	24	2		2	OR2T33	1	248437125	5'Flank	SNP	C	TCGA-49-6744-01A-11D-1855-08	34616	248437125	813496	78	126518											
OR2G6	391211	broad.mit.edu	37	chr1	248684907	248684907	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatccccaaatattaatcaCttagtatttgaagctgaaga	5	8	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248684907	G	G	248684907	1	3	146	0	1	0	0	0	0	0	0	0	11094	580	20	4		4	OR2G6	1	248684907	5'Flank	SNP	C	TCGA-49-6744-01A-11D-1855-08	247782	248684907	565714	79	126519											
PXDN	7837	broad.mit.edu	37	chr2	1642593	1642593	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggaatcttggagtggggGgacacaggccgccaggcacc	17	10	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1642593	A	A	1642593	1	1	146	0	1	0	0	0	0	0	0	0	12955	1247	43	4		4	PXDN	2	1642593	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08		1642593	241556780	80	126520											
COLEC11	78989	broad.mit.edu	37	chr2	3673774	3673774	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccatggccacatggcttgGacagaactggagcagaagcc	12	12	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3673774	T	T	3673774	1	4	146	0	1	0	0	0	0	0	0	0	3743	1189	41	3		3	COLEC11	2	3673774	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	2031181	3673774	239525599	81	126521											
GREB1	9687	broad.mit.edu	37	chr2	11718443	11718443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttagaagccggcagatcCccgccagtacttgttccagt	10	12	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11718443	A	A	11718443	3	1	146	1	0	0	0	0	1	0	0	0	6826	623	22	2	676	2	GREB1	2	11718443	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	8044669	11718443	231480930	82	126522											
GREB1	9687	broad.mit.edu	37	chr2	11755257	11755257	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcgattgataaactcctccTgcttggtgagaacagccttg	10	10	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11755257	A	A	11755257	3	1	146	1	0	0	0	0	1	0	0	0	6826	1580	55	5	3345	5	GREB1	2	11755257	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	36814	11755257	231444116	83	126523											
GREB1	9687	broad.mit.edu	37	chr2	11767047	11767047	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggggataatgtttgctTtgctccctgctgctttttaa	11	8	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11767047	G	G	11767047	1	3	146	0	1	0	0	0	0	0	0	0	6826	1856	64	5		5	GREB1	2	11767047	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	11790	11767047	231432326	84	126524											
DNMT3A	1788	broad.mit.edu	37	chr2	25463080	25463080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagaagtcaccagtccCcagctccacaatgcagatga	8	13	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25463080	A	A	25463080	1	1	146	0	1	0	0	0	0	0	0	0	4716	638	22	2		2	DNMT3A	2	25463080	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	13696033	25463080	217736293	85	126525											
DTNB	1838	broad.mit.edu	37	chr2	25799721	25799721	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttacccaagaggaatgctCcttcatctggtgctggttgc	11	10	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25799721	A	A	25799721	4	1	146	1	0	0	0	0	0	1	0	0	4829	864	30	3	1073	3	DTNB	2	25799721	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	336641	25799721	217399652	86	126526											
OTOF	9381	broad.mit.edu	37	chr2	26684914	26684914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggaagcaagccccaccCagctcagtccctcccatgca	8	20	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26684914	A	A	26684914	1	1	146	0	1	0	0	0	0	0	0	0	11397	609	21	2		2	OTOF	2	26684914	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	885193	26684914	216514459	87	126527											
SLC8A1	6546	broad.mit.edu	37	chr2	40656903	40656903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acatattgaatgcagcacttCccacgatggtgctaggaccg	10	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656903	A	A	40656903	3	1	146	1	0	0	0	0	1	0	0	0	14820	855	30	3	2551	3	SLC8A1	2	40656903	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	13971989	40656903	202542470	88	126528											
PSME4	23198	broad.mit.edu	37	chr2	54122797	54122797	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttttttagttcttggtatAgttttgctgtcataatgcaa	7	5	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54122797	T	T	54122797	2	4	146	1	0	0	0	0	0	0	0	1	12815	407	15	5		5	PSME4	2	54122797	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	13465894	54122797	189076576	89	126529											
B3GNT2	10678	broad.mit.edu	37	chr2	62449068	62449068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgcttgctgtgagccacGcgctattttaaaagctttcc	9	10	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62449068	T	T	62449068	1	4	146	0	1	0	0	0	0	0	0	0	1262	1102	38	3		3	B3GNT2	2	62449068	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	8326271	62449068	180750305	90	126530											
ARHGAP25	9938	broad.mit.edu	37	chr2	69053120	69053120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctttccttccttgtagcCttgagaaggaaaattatgac	7	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69053120	A	A	69053120	3	1	146	1	0	0	0	0	1	0	0	0	876	695	24	2	1817	2	ARHGAP25	2	69053120	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6604052	69053120	174146253	91	126531											
ACTG2	72	broad.mit.edu	37	chr2	74129498	74129499	+	Nonsense_Mutation	DNP	GG	TT	TT													gcattgcagggtgtgatggtGggaatgggccagaaagacag							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	74129499	TT	TT	74129498	4	4	146	1	0	0	0	0	0	1	0	0	197	1335	47	2	144	2	ACTG2	2	74129498	Nonsense_Mutation	DNP	GG	TCGA-49-6744-01A-11D-1855-08	5076378	74129498	169069875	92	126532											
REG3G	130120	broad.mit.edu	37	chr2	79254112	79254112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaccttttccctgccctcCctcagtgggtctcaggctcc	7	19	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79254112	A	A	79254112	1	1	146	0	1	0	0	0	0	0	0	0	13321	638	22	2		2	REG3G	2	79254112	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	5124614	79254112	163945261	93	126533											
REG1A	5967	broad.mit.edu	37	chr2	79349965	79349965	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctggcccttccccatctAgaaccgccgctggcactgga	10	16	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79349965	G	G	79349965	5	3	146	1	0	0	0	0	0	0	1	0	13318	434	15	5	334	5	REG1A	2	79349965	Splice_Site	SNP	A	TCGA-49-6744-01A-11D-1855-08	95853	79349965	163849408	94	126534											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105924050	105924050	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacccaaaaagatcaggcGcacaaatgcatcctcctcac	6	16	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105924050	A	A	105924050	1	1	146	0	1	0	0	0	0	0	0	0	15947	1102	38	4		4	TGFBRAP1	2	105924050	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	26574085	105924050	137275323	95	126535											
BIN1	274	broad.mit.edu	37	chr2	127810923	127810923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcacctgtgaacaggctaGgagcatgtgggcctggacac	14	10	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127810923	T	T	127810923	1	4	146	0	1	0	0	0	0	0	0	0	1438	1015	35	2		2	BIN1	2	127810923	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	21886873	127810923	115388450	96	126536											
CCDC74B	91409	broad.mit.edu	37	chr2	130900021	130900021	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcatggcctcttcccGtgtcctgtcagcgtccccag	12	15	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130900021	A	A	130900021	1	1	146	0	1	0	0	0	0	0	0	0	2876	1160	40	4		4	CCDC74B	2	130900021	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	3089098	130900021	112299352	97	126537											
CCDC74A	90557	broad.mit.edu	37	chr2	132290415	132290415	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccgccacaggccccaccaTgcccctgcccctgcctttca	6	23	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132290415	C	C	132290415	1	2	146	0	1	0	0	0	0	0	0	0	2875	1479	51	5		5	CCDC74A	2	132290415	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	1390394	132290415	110908958	98	126538											
ZRANB3	84083	broad.mit.edu	37	chr2	135988469	135988469	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttgtggtacaaaaaatgatCgaatatcatgctgtttttct	8	5	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135988469	G	G	135988469	3	3	146	1	0	0	0	0	1	0	0	0	18353	884	31	4	1707	4	ZRANB3	2	135988469	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3698054	135988469	107210904	99	126539											
DARS	1615	broad.mit.edu	37	chr2	136670155	136670155	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactataaaaagaataaatgCaattaaaatacatttttaaa	2	3	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136670155	T	T	136670155	1	4	146	0	1	0	0	0	0	0	0	0	4274	725	25	4		4	DARS	2	136670155	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	681686	136670155	106529218	100	126540											
ABCB11	8647	broad.mit.edu	37	chr2	169869807	169869807	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtgttccatttgtcatgtTctggttgagggaactgttag	12	6	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169869807	C	C	169869807	3	2	146	1	0	0	0	0	1	0	0	0	42	1783	62	5	3697	5	ABCB11	2	169869807	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	33199652	169869807	73329566	101	126541											
MAP1D	254042	broad.mit.edu	37	chr2	172945144	172945144	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggcctgaggagccgccCgaaggtcgcggtgacctggt	17	11	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172945144	A	A	172945144	1	1	146	0	1	0	0	0	0	0	0	0	9321	667	23	1		1	MAP1D	2	172945144	3'UTR	SNP	C	TCGA-49-6744-01A-11D-1855-08	3075337	172945144	70254229	102	126542											
TTN	7273	broad.mit.edu	37	chr2	179395805	179395805	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggttgatttgtactttgtGgtggtcacttggtggcgggc	16	5	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179395805	C	C	179395805	2	2	146	1	0	0	0	0	0	0	0	1	16861	1335	47	4		4	TTN	2	179395805	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	6450661	179395805	63803568	103	126543											
TTN	7273	broad.mit.edu	37	chr2	179428039	179428039	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcttctttgacctctAcaacatagcctttaacaggt	6	12	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179428039	C	C	179428039	3	2	146	1	0	0	0	0	1	0	0	0	16861	391	14	5	25307	5	TTN	2	179428039	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	32234	179428039	63771334	104	126544											
TTN	7273	broad.mit.edu	37	chr2	179575972	179575972	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctttataccaagacacggAgataggttctgatccactta	8	9	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179575972	C	C	179575972	3	2	146	1	0	0	0	0	1	0	0	0	16861	304	11	5	76602	5	TTN	2	179575972	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	147933	179575972	63623401	105	126545											
COL3A1	1281	broad.mit.edu	37	chr2	189839273	189839273	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgctctgcttcatcccactAttattttggcacaacaggaa	6	12	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189839273	G	G	189839273	3	3	146	1	0	0	0	0	1	0	0	0	3720	449	16	5	60	5	COL3A1	2	189839273	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	10263301	189839273	53360100	106	126546											
COL3A1	1281	broad.mit.edu	37	chr2	189859095	189859095	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctctgttgactgaaaggTatagtttaattccatcaaca	6	7	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189859095	A	A	189859095	1	1	146	0	1	0	0	0	0	0	0	0	3720	1653	57	5		5	COL3A1	2	189859095	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	19822	189859095	53340278	107	126547											
COL5A2	1290	broad.mit.edu	37	chr2	189904155	189904155	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttttgtcatcaggagcCgcctgatcttcagtaaactc	8	10	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189904155	A	A	189904155	2	1	146	1	0	0	0	0	0	0	0	1	3729	639	23	1		1	COL5A2	2	189904155	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	45060	189904155	53295218	108	126548											
PMS1	5378	broad.mit.edu	37	chr2	190660540	190660540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcgagataacggggagGgtatcaaggctgttgatgca	17	5	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190660540	T	T	190660540	3	4	146	1	0	0	0	0	1	0	0	0	12237	1232	43	2	184	2	PMS1	2	190660540	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	756385	190660540	52538833	109	126549											
DNAH7	56171	broad.mit.edu	37	chr2	196718111	196718111	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgaggtaagcaaccactcCggaggaaatgaggatatccc	11	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196718111	A	A	196718111	4	1	146	1	0	0	0	0	0	1	0	0	4646	661	23	1	3417	1	DNAH7	2	196718111	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6057571	196718111	46481262	110	126550											
RFTN2	130132	broad.mit.edu	37	chr2	198436886	198436886	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcccgggagggagaaaggCggcactcctcaggcaggtgt	16	10	1	1	rs115896530	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198436886	G	G	198436886	3	3	146	1	0	0	0	0	1	0	0	0	13367	768	27	4	157	4	RFTN2	2	198436886	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1718775	198436886	44762487	111	126551											
ALS2CR4	65062	broad.mit.edu	37	chr2	202494592	202494592	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccctaagaacacataacgTaattactaacaactagcgag	5	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202494592	A	A	202494592	1	1	146	0	1	0	0	0	0	0	0	0	554	1653	57	5		5	ALS2CR4	2	202494592	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	4057706	202494592	40704781	112	126552											
ALS2CR8	79800	broad.mit.edu	37	chr2	203831589	203831589	+	Intron	DEL	A	-	-													tactaatgttttctttccttAaagctgtatatttgaaagat							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	203831589	-	-	203831589	6	5	146	0	1	1	0	1	0	0	0	0	555	377	13	0		0	ALS2CR8	2	203831589	Intron	DEL	A	TCGA-49-6744-01A-11D-1855-08	1336997	203831589	39367784	113	126553											
EEF1B2	1933	broad.mit.edu	37	chr2	207026077	207026077	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtttttcaagcctgccaGgagtgaagaaagctttgggc	12	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207026077	T	T	207026077	4	4	146	1	0	0	0	0	0	1	0	0	4965	1001	35	2	221	2	EEF1B2	2	207026077	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3194488	207026077	36173296	114	126554											
EEF1B2	1933	broad.mit.edu	37	chr2	207026150	207026150	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaagtggagctacagataGtaaagatgatgatgacattg	13	3	0	5			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207026150	C	C	207026150	3	2	146	1	0	0	0	0	1	0	0	0	4965	1029	36	4	294	4	EEF1B2	2	207026150	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	73	207026150	36173223	115	126555											
LANCL1	10314	broad.mit.edu	37	chr2	211306026	211306026	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctaaaaacacaaaaacgTggtacctgctgaatatggct	7	10	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211306026	A	A	211306026	1	1	146	0	1	0	0	0	0	0	0	0	8692	1711	59	5		5	LANCL1	2	211306026	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	4279876	211306026	31893347	116	126556											
ERBB4	2066	broad.mit.edu	37	chr2	212590042	212590042	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagcaaacatttaatgaatGaggtttacaactagatcaaa	6	6	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212590042	C	C	212590042	1	2	146	0	1	0	0	0	0	0	0	0	5251	1305	45	4		4	ERBB4	2	212590042	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1284016	212590042	30609331	117	126557											
ATIC	471	broad.mit.edu	37	chr2	216214301	216214301	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccctccggttctgctgctGacaaagttgtgattgaggcc	11	12	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216214301	T	T	216214301	3	4	146	1	0	0	0	0	1	0	0	0	1109	1290	45	3	1764	3	ATIC	2	216214301	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3624259	216214301	26985072	118	126558											
DNPEP	23549	broad.mit.edu	37	chr2	220246787	220246787	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgaaggctgtcgggtgctgGcacgaggctgagatccgccg	17	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220246787	A	A	220246787	2	1	146	1	0	0	0	0	0	0	0	1	4719	1195	42	4		4	DNPEP	2	220246787	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	4032486	220246787	22952586	119	126559											
SPEG	10290	broad.mit.edu	37	chr2	220354583	220354583	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggagcagtccccgaaGctctcccaggcctgagggta	13	15	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220354583	C	C	220354583	3	2	146	1	0	0	0	0	1	0	0	0	15154	971	34	4	8997	4	SPEG	2	220354583	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	107796	220354583	22844790	120	126560											
GRIP2	80852	broad.mit.edu	37	chr3	14558745	14558745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagatgagagcacagcccCgtgaaccccagccgaggctc	14	14	0	3	rs113464747	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14558745	A	A	14558745	1	1	146	0	1	0	0	0	0	0	0	0	6854	667	23	1		1	GRIP2	3	14558745	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08		14558745	183463685	121	126561											
ZNF385D	79750	broad.mit.edu	37	chr3	21706497	21706497	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggacggacaagggccgggaGagcaggactctggcatgtac	17	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21706497	T	T	21706497	3	4	146	1	0	0	0	0	1	0	0	0	18004	942	33	3	1169	3	ZNF385D	3	21706497	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	7147752	21706497	176315933	122	126562											
ARPP21	10777	broad.mit.edu	37	chr3	35833950	35833950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccacctcagagtcagaaCgtgataaataaccaacaagg	8	11	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35833950	A	A	35833950	3	1	146	1	0	0	0	0	1	0	0	0	982	535	19	3	2188	3	ARPP21	3	35833950	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	14127453	35833950	162188480	123	126563											
SLC22A14	9389	broad.mit.edu	37	chr3	38348989	38348990	+	Intron	DNP	GG	CT	CT													atggctcagggcctggcccaGgtgtatccggctggggccag							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	38348990	CT	CT	38348989	1	2	146	0	1	0	0	0	0	0	0	0	14558	1015	35	4		4	SLC22A14	3	38348989	Intron	DNP	GG	TCGA-49-6744-01A-11D-1855-08	2515039	38348989	159673441	124	126564											
SCN10A	6336	broad.mit.edu	37	chr3	38764848	38764848	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcttctgtggatcccaGgtgagtgttcgctcaactgg	12	9	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38764848	A	A	38764848	1	1	146	0	1	0	0	0	0	0	0	0	14025	1015	35	4		4	SCN10A	3	38764848	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	415859	38764848	159257582	125	126565											
ZNF445	353274	broad.mit.edu	37	chr3	44540778	44540778	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctttcccacactcaatacAttcataaggtttttctctcc	4	13	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44540778	T	T	44540778	1	4	146	0	1	0	0	0	0	0	0	0	18045	232	8	5		5	ZNF445	3	44540778	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	5775930	44540778	153481652	126	126566											
SETD2	29072	broad.mit.edu	37	chr3	47158152	47158152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaagacaatcttccccaCatgctatttcaccttgagct	5	12	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47158152	A	A	47158152	3	1	146	1	0	0	0	0	1	0	0	0	14244	478	17	3	3219	3	SETD2	3	47158152	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2617374	47158152	150864278	127	126567											
COL7A1	1294	broad.mit.edu	37	chr3	48617237	48617237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttctctctggctccaggtCctgtgtctacctgtgggggg	13	13	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48617237	A	A	48617237	3	1	146	1	0	0	0	0	1	0	0	0	3736	855	30	3	3947	3	COL7A1	3	48617237	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1459085	48617237	149405193	128	126568											
NEK4	6787	broad.mit.edu	37	chr3	52777561	52777561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttggtatggaacataccCcagcaggagctagcccaaaa	9	10	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52777561	A	A	52777561	1	1	146	0	1	0	0	0	0	0	0	0	10421	638	22	2		2	NEK4	3	52777561	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	4160324	52777561	145244869	129	126569											
ASB14	142686	broad.mit.edu	37	chr3	57303524	57303524	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgcataatttgccatttGactgcagacaagtaacttag	7	8	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57303524	T	T	57303524	1	4	146	0	1	0	0	0	0	0	0	0	1022	1305	45	3		3	ASB14	3	57303524	3'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08	4525963	57303524	140718906	130	126570											
PDZRN3	23024	broad.mit.edu	37	chr3	73651529	73651529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatcctgtcatgaatttgCaggcctccttccttggctgc	8	12	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73651529	A	A	73651529	2	1	146	1	0	0	0	0	0	0	0	1	11803	697	25	3		3	PDZRN3	3	73651529	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	16348005	73651529	124370901	131	126571											
EPHA3	2042	broad.mit.edu	37	chr3	89457078	89457078	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcagaggattttgaaaatAtgaagttattaaactttcac	6	5	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89457078	T	T	89457078	1	4	146	0	1	0	0	0	0	0	0	0	5210	464	16	5		5	EPHA3	3	89457078	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	15805549	89457078	108565352	132	126572											
NSUN3	63899	broad.mit.edu	37	chr3	93813893	93813893	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaggtgttagtggatgctcCgtgttcaaatgatcgaagct	12	7	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93813893	T	T	93813893	3	4	146	1	0	0	0	0	1	0	0	0	10774	652	23	4	656	4	NSUN3	3	93813893	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4356815	93813893	104208537	133	126573											
OR5K1	26339	broad.mit.edu	37	chr3	98188926	98188926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttaggttagttttctGtggatcgaatcacatcaacc	8	7	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98188926	T	T	98188926	3	4	146	1	0	0	0	0	1	0	0	0	11260	1377	48	3	508	3	OR5K1	3	98188926	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	4375033	98188926	99833504	134	126574											
ZPLD1	131368	broad.mit.edu	37	chr3	102187791	102187791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgatgtcctgttttcaCgttccctaaaatttagctgt	7	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102187791	A	A	102187791	1	1	146	0	1	0	0	0	0	0	0	0	18350	551	19	3		3	ZPLD1	3	102187791	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	3998865	102187791	95834639	135	126575											
MORC1	27136	broad.mit.edu	37	chr3	108698378	108698378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccttaacttagacttcaGttttctcactgtttccttga	4	10	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108698378	T	T	108698378	3	4	146	1	0	0	0	0	1	0	0	0	9795	1020	36	3	513	3	MORC1	3	108698378	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	6510587	108698378	89324052	136	126576											
MORC1	27136	broad.mit.edu	37	chr3	108819311	108819311	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacttcaaggttgacagCcgttttttggatcgtccaaa	9	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108819311	A	A	108819311	2	1	146	1	0	0	0	0	0	0	0	1	9795	726	26	3		3	MORC1	3	108819311	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	120933	108819311	89203119	137	126577											
KIAA2018	205717	broad.mit.edu	37	chr3	113378249	113378249	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgaactatctgttgtcacAggaggtgctgcagttgttgt	13	7	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113378249	T	T	113378249	2	4	146	1	0	0	0	0	0	0	0	1	8338	175	7	5		5	KIAA2018	3	113378249	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	4558938	113378249	84644181	138	126578											
C3orf1	51300	broad.mit.edu	37	chr3	119242481	119242481	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactacaagttactgagcacCtccctgagaaaattgaaagt	8	9	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119242481	G	G	119242481	3	3	146	1	0	0	0	0	1	0	0	0	2228	681	24	4	762	4	C3orf1	3	119242481	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	5864232	119242481	78779949	139	126579											
NR1I2	8856	broad.mit.edu	37	chr3	119526029	119526029	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcctctgaggcctctacAcatccctgtccagtcttttc	6	15	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119526029	T	T	119526029	1	4	146	0	1	0	0	0	0	0	0	0	10715	174	6	5		5	NR1I2	3	119526029	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	283548	119526029	78496401	140	126580											
HGD	3081	broad.mit.edu	37	chr3	120369567	120369567	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacctggagtttgacttctGgccaaaatcccttagaagat	8	9	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120369567	C	C	120369567	1	2	146	0	1	0	0	0	0	0	0	0	7151	1363	47	4		4	HGD	3	120369567	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	843538	120369567	77652863	141	126581											
STXBP5L	9515	broad.mit.edu	37	chr3	120959336	120959336	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttggagcacaaacatatcCagaaattattattactgggt	7	8	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120959336	G	G	120959336	3	3	146	1	0	0	0	0	1	0	0	0	15475	594	21	4	1432	4	STXBP5L	3	120959336	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	589769	120959336	77063094	142	126582											
CD86	942	broad.mit.edu	37	chr3	121774257	121774257	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaagctttgcttctctgCtgctgtaacagggactagca	11	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121774257	T	T	121774257	1	4	146	0	1	0	0	0	0	0	0	0	3073	812	28	4		4	CD86	3	121774257	5'UTR	SNP	C	TCGA-49-6744-01A-11D-1855-08	814921	121774257	76248173	143	126583											
SEMA5B	54437	broad.mit.edu	37	chr3	122642417	122642417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtggctggtaatctggGggtaaggcagtgtgtgaaga	18	4	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122642417	A	A	122642417	1	1	146	0	1	0	0	0	0	0	0	0	14151	1247	43	4		4	SEMA5B	3	122642417	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	868160	122642417	75380013	144	126584											
SEMA5B	54437	broad.mit.edu	37	chr3	122658190	122658190	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactttaggggctgaattctGaatggcgccacttgcgttgc	12	9	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122658190	T	T	122658190	1	4	146	0	1	0	0	0	0	0	0	0	14151	1305	45	3		3	SEMA5B	3	122658190	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	15773	122658190	75364240	145	126585											
PPM1L	151742	broad.mit.edu	37	chr3	160786690	160786690	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatccgctgaaaaatctcaaCgtggtcatcccagacccaga	7	13	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160786690	T	T	160786690	2	4	146	1	0	0	0	0	0	0	0	1	12445	535	19	4		4	PPM1L	3	160786690	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	38128500	160786690	37235740	146	126586											
SI	6476	broad.mit.edu	37	chr3	164725667	164725667	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatatataataataacatgAtaatatcaaaggcataccaa	3	5	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164725667	T	T	164725667	1	4	146	0	1	0	0	0	0	0	0	0	14410	348	12	5		5	SI	3	164725667	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	3938977	164725667	33296763	147	126587											
SI	6476	broad.mit.edu	37	chr3	164777707	164777707	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacaaatggtatgccagcttCccggtttctccttaccactt	6	13	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164777707	G	G	164777707	3	3	146	1	0	0	0	0	1	0	0	0	14410	864	30	4	4510	4	SI	3	164777707	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	52040	164777707	33244723	148	126588											
SLITRK3	22865	broad.mit.edu	37	chr3	164906357	164906357	+	Frame_Shift_Del	DEL	G	-	-													tcctcacgaggcttgtagatGgggttgttgcacatttgggt					rs146211129		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164906357	-	-	164906357	7	5	146	1	0	1	0	1	0	0	0	0	14858	1335	47	0	675	0	SLITRK3	3	164906357	Frame_Shift_Del	DEL	G	TCGA-49-6744-01A-11D-1855-08	128650	164906357	33116073	149	126589											
CLDN11	5010	broad.mit.edu	37	chr3	170140986	170140986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcgccctgatgattgctGcctcggtcctgggtctgccg	14	15	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170140986	T	T	170140986	3	4	146	1	0	0	0	0	1	0	0	0	3504	1319	46	3	268	3	CLDN11	3	170140986	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	5234629	170140986	27881444	150	126590											
CLCN2	1181	broad.mit.edu	37	chr3	184069701	184069701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaactcccttctcctccCtccttccccactggcctgag	5	21	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184069701	A	A	184069701	1	1	146	0	1	0	0	0	0	0	0	0	3494	696	24	2		2	CLCN2	3	184069701	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	13928715	184069701	13952729	151	126591											
OSTN	344901	broad.mit.edu	37	chr3	190967879	190967879	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatccccatggatcggattgGtagaaaccggctttcaaatt	9	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190967879	C	C	190967879	3	2	146	1	0	0	0	0	1	0	0	0	11393	1261	44	4	381	4	OSTN	3	190967879	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	6898178	190967879	7054551	152	126592											
MFI2	4241	broad.mit.edu	37	chr3	196749841	196749841	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgctcaccggaaggccccgcTgtagtcgtagtatctctcca	10	15	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196749841	A	A	196749841	3	1	146	1	0	0	0	0	1	0	0	0	9615	1580	55	5	1834	5	MFI2	3	196749841	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	5781962	196749841	1272589	153	126593											
LYAR	55646	broad.mit.edu	37	chr4	4276496	4276496	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgttccttattgactggttCcttatcattaagcaaaagca	6	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4276496	A	A	4276496	4	1	146	1	0	0	0	0	0	1	0	0	9191	869	30	3	725	3	LYAR	4	4276496	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08		4276496	186877780	154	126594											
MAN2B2	23324	broad.mit.edu	37	chr4	6599959	6599959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccatcactgggactgagtCccccaaggtgagagacatgt	12	11	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6599959	A	A	6599959	3	1	146	1	0	0	0	0	1	0	0	0	9309	855	30	3	1317	3	MAN2B2	4	6599959	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2323463	6599959	184554317	155	126595											
CCDC96	257236	broad.mit.edu	37	chr4	7043210	7043210	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgtccgtccgcagcccctCtcgggcttgcttcgtcttgg	12	15	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7043210	A	A	7043210	4	1	146	1	0	0	0	0	0	1	0	0	2902	922	32	3	215	3	CCDC96	4	7043210	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	443251	7043210	184111066	156	126596											
SORCS2	57537	broad.mit.edu	37	chr4	7717039	7717039	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctacaccagcagccttggGtgagtgtgggtgcgggcctc	15	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7717039	T	T	7717039	5	4	146	1	0	0	0	0	0	0	1	0	15045	1275	44	3	2319	3	SORCS2	4	7717039	Splice_Site	SNP	G	TCGA-49-6744-01A-11D-1855-08	673829	7717039	183437237	157	126597											
GPR125	166647	broad.mit.edu	37	chr4	22425944	22425944	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcatcagccaacatgatgTtacttgcaatgtcaaccatc	6	11	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22425944	C	C	22425944	3	2	146	1	0	0	0	0	1	0	0	0	6704	1725	60	5	2526	5	GPR125	4	22425944	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	14708905	22425944	168728332	158	126598											
ARAP2	116984	broad.mit.edu	37	chr4	36161127	36161127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactacagcagcacatagagCctggtcattaaaagaaaata	7	9	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36161127	A	A	36161127	3	1	146	1	0	0	0	0	1	0	0	0	841	753	26	3	2751	3	ARAP2	4	36161127	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	13735183	36161127	154993149	159	126599											
YIPF7	285525	broad.mit.edu	37	chr4	44624594	44624594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgattccaaagatgcccCtgcagcaaagacaaagaaat	7	10	0	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44624594	A	A	44624594	1	1	146	0	1	0	0	0	0	0	0	0	17610	695	24	2		2	YIPF7	4	44624594	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	8463467	44624594	146529682	160	126600											
LRRC66	339977	broad.mit.edu	37	chr4	52862092	52862092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcgtcctcttttttgcCggcagcctgcacatcgcggg	14	13	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52862092	A	A	52862092	3	1	146	1	0	0	0	0	1	0	0	0	9105	652	23	1	1550	1	LRRC66	4	52862092	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	8237498	52862092	138292184	161	126601											
SPATA18	132671	broad.mit.edu	37	chr4	52948665	52948665	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggagaagctgtcaccaggAgaggggcttttgtacggtgg	18	6	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52948665	T	T	52948665	4	4	146	1	0	0	0	0	0	1	0	0	15119	296	11	5	1506	5	SPATA18	4	52948665	Nonsense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	86573	52948665	138205611	162	126602											
LPHN3	23284	broad.mit.edu	37	chr4	62845511	62845511	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaagcaacctacattgataCcagtgaagaatttttccact	6	9	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62845511	T	T	62845511	1	4	146	0	1	0	0	0	0	0	0	0	9004	522	18	4		4	LPHN3	4	62845511	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	9896846	62845511	128308765	163	126603											
EPHA5	2044	broad.mit.edu	37	chr4	66230911	66230911	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgtccactacaaacttcaCcaaattcaccttgtgataaa	3	12	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66230911	T	T	66230911	3	4	146	1	0	0	0	0	1	0	0	0	5212	507	18	4	1081	4	EPHA5	4	66230911	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3385400	66230911	124923365	164	126604											
UGT2B10	7365	broad.mit.edu	37	chr4	69885531	69885531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacaacaggtacgtaggaaGgagggaaaataaatcctcca	10	7	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69885531	A	A	69885531	3	1	146	1	0	0	0	0	1	0	0	0	17082	987	35	4	2652	4	UGT2B10	4	69885531	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3654620	69885531	121268745	165	126605											
FRAS1	80144	broad.mit.edu	37	chr4	79461787	79461787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcacagctccactcagaCgcaaccgaagggacctggta	9	15	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79461787	A	A	79461787	3	1	146	1	0	0	0	0	1	0	0	0	6102	536	19	3	11917	3	FRAS1	4	79461787	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	9576256	79461787	111692489	166	126606											
ABCG2	9429	broad.mit.edu	37	chr4	89052998	89052998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgaaattggcaggtcgcGgtgctccatttatcagaaca	10	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89052998	T	T	89052998	3	4	146	1	0	0	0	0	1	0	0	0	69	1116	39	1	1684	1	ABCG2	4	89052998	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	9591211	89052998	102101278	167	126607											
FAM13A	10144	broad.mit.edu	37	chr4	89653369	89653369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagatacacagcaaccCcaataaaaatctggtcactt	6	12	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89653369	A	A	89653369	1	1	146	0	1	0	0	0	0	0	0	0	5498	638	22	2		2	FAM13A	4	89653369	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	600371	89653369	101500907	168	126608											
COL25A1	84570	broad.mit.edu	37	chr4	109748433	109748433	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgtctaaagcctctatttCaaggaccattctatgaaaat	5	8	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109748433	G	G	109748433	1	3	146	0	1	0	0	0	0	0	0	0	3716	841	29	4		4	COL25A1	4	109748433	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	20095064	109748433	81405843	169	126609											
ANK2	287	broad.mit.edu	37	chr4	114264221	114264221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtttcggcaacttggtaCcattaactaaaagtggccag	9	8	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114264221	A	A	114264221	3	1	146	1	0	0	0	0	1	0	0	0	621	507	18	3	4370	3	ANK2	4	114264221	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4515788	114264221	76890055	170	126610											
NDST4	64579	broad.mit.edu	37	chr4	115773826	115773826	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataaatccatataccaatgTatttcataaaatatttttaa	2	5	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115773826	A	A	115773826	1	1	146	0	1	0	0	0	0	0	0	0	10353	1653	57	5		5	NDST4	4	115773826	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	1509605	115773826	75380450	171	126611											
ADAD1	132612	broad.mit.edu	37	chr4	123304906	123304906	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtacatacattgtttgcaaGaatataataaaaattattgt	5	3	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123304906	A	A	123304906	1	1	146	0	1	0	0	0	0	0	0	0	231	957	33	4		4	ADAD1	4	123304906	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	7531080	123304906	67849370	172	126612											
ADAD1	132612	broad.mit.edu	37	chr4	123333934	123333934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgctgagtcattttataCagccagtttacatcagcagt	7	9	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123333934	A	A	123333934	3	1	146	1	0	0	0	0	1	0	0	0	231	479	17	3	1249	3	ADAD1	4	123333934	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	29028	123333934	67820342	173	126613											
FAT4	79633	broad.mit.edu	37	chr4	126369691	126369691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcattattctctttcggGtagaaattctgaaaaatttc	6	7	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126369691	T	T	126369691	3	4	146	1	0	0	0	0	1	0	0	0	5749	1261	44	3	7554	3	FAT4	4	126369691	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3035757	126369691	64784585	174	126614											
PCDH10	57575	broad.mit.edu	37	chr4	134072013	134072013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggccctactcaccatccgaGtgctggactccaatgacaat	8	15	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134072013	C	C	134072013	3	2	146	1	0	0	0	0	1	0	0	0	11601	1029	36	4	720	4	PCDH10	4	134072013	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	7702322	134072013	57082263	175	126615											
C4orf45	152940	broad.mit.edu	37	chr4	159928840	159928840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggactactgggtcttggtGcaccagcgagatgaggcagc	15	9	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159928840	T	T	159928840	1	4	146	0	1	0	0	0	0	0	0	0	2296	1334	46	3		3	C4orf45	4	159928840	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	25856827	159928840	31225436	176	126616											
FSTL5	56884	broad.mit.edu	37	chr4	162459300	162459300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggtgtgtgtgtgctgttGggtggttctatacatacggg	16	4	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162459300	T	T	162459300	1	4	146	0	1	0	0	0	0	0	0	0	6140	1363	47	2		2	FSTL5	4	162459300	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	2530460	162459300	28694976	177	126617											
MARCH1	55016	broad.mit.edu	37	chr4	165111267	165111267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattggagataaagaaaaGctgggaggtaaactttcctc	11	6	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165111267	T	T	165111267	1	4	146	0	1	0	0	0	0	0	0	0	9390	986	34	3		3	MARCH1	4	165111267	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	2651967	165111267	26043009	178	126618											
GALNTL6	442117	broad.mit.edu	37	chr4	172735814	172735814	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctaacgttggtctctGgtctctgtacaaggataagc	10	11	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172735814	A	A	172735814	4	1	146	1	0	0	0	0	0	1	0	0	6287	1357	47	4	85	4	GALNTL6	4	172735814	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	7624547	172735814	18418462	179	126619											
ODZ3	55714	broad.mit.edu	37	chr4	183652148	183652149	+	Missense_Mutation	DNP	CC	AA	AA													gtcttttatgtgatggatacCctagtcatgaagaaagaaga							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	183652149	AA	AA	183652148	3	1	146	1	0	0	0	0	1	0	0	0	10931	610	22	2	2881	2	ODZ3	4	183652148	Missense_Mutation	DNP	CC	TCGA-49-6744-01A-11D-1855-08	10916334	183652148	7502128	180	126620											
TUBB4Q	56604	broad.mit.edu	37	chr4	190905532	190905532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgccacctgcgtggggcGggagggcatgagcgagggga	20	10	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190905532	T	T	190905532	1	4	146	0	1	0	0	0	0	0	0	0	16885	1131	39	1		1	TUBB4Q	4	190905532	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	7253384	190905532	248744	181	126621											
KIAA0947	23379	broad.mit.edu	37	chr5	5462198	5462198	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacacaaaacatcacggaGgtggctgctgtgaaaagcat	10	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5462198	A	A	5462198	2	1	146	1	0	0	0	0	0	0	0	1	8272	991	35	4		4	KIAA0947	5	5462198	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08		5462198	175453062	182	126622											
ADCY2	108	broad.mit.edu	37	chr5	7772948	7772948	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacagccaccttatatgttGaccagatgagatgggcggtg	12	9	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7772948	T	T	7772948	1	4	146	0	1	0	0	0	0	0	0	0	294	1305	45	3		3	ADCY2	5	7772948	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	2310750	7772948	173142312	183	126623											
SEMA5A	9037	broad.mit.edu	37	chr5	9063002	9063002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacacaatccacttacctgGgcagggcaaaatgttgcatt	8	11	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9063002	T	T	9063002	3	4	146	1	0	0	0	0	1	0	0	0	14150	1232	43	2	733	2	SEMA5A	5	9063002	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1290054	9063002	171852258	184	126624											
CTNND2	1501	broad.mit.edu	37	chr5	11384919	11384919	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagctcagctggtggatGggcgaggaggagatggtgga	22	4	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11384919	T	T	11384919	2	4	146	1	0	0	0	0	0	0	0	1	4054	1335	47	2		2	CTNND2	5	11384919	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	2321917	11384919	169530341	185	126625											
FAM134B	54463	broad.mit.edu	37	chr5	16572034	16572034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggactaattggctaatatgCctacacaaagatcagaaatg	8	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16572034	A	A	16572034	1	1	146	0	1	0	0	0	0	0	0	0	5492	754	26	3		3	FAM134B	5	16572034	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	5187115	16572034	164343226	186	126626											
CDH12	1010	broad.mit.edu	37	chr5	21883649	21883649	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccaacttaaagatatggCtattgctactggtggtgcag	11	7	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21883649	T	T	21883649	1	4	146	0	1	0	0	0	0	0	0	0	3128	812	28	4		4	CDH12	5	21883649	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	5311615	21883649	159031611	187	126627											
PRDM9	56979	broad.mit.edu	37	chr5	23522490	23522490	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgcatacaaagaggtcagcGagccgcaggatgatgattac	12	8	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23522490	A	A	23522490	3	1	146	1	0	0	0	0	1	0	0	0	12569	1059	37	4	608	4	PRDM9	5	23522490	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1638841	23522490	157392770	188	126628											
NPR3	4883	broad.mit.edu	37	chr5	32775108	32775108	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttgtaccaattaaatgaGataatacacgtgaaagtgct	8	5	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32775108	T	T	32775108	1	4	146	0	1	0	0	0	0	0	0	0	10691	957	33	3		3	NPR3	5	32775108	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	9252618	32775108	148140152	189	126629											
ADAMTS12	81792	broad.mit.edu	37	chr5	33616275	33616275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcctctttccagcctcccCatcatttagtgaccttgctg	5	15	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33616275	A	A	33616275	1	1	146	0	1	0	0	0	0	0	0	0	257	609	21	2		2	ADAMTS12	5	33616275	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	841167	33616275	147298985	190	126630											
RXFP3	51289	broad.mit.edu	37	chr5	33936931	33936931	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaactcttcagtctggtccCggaccttctggaggcggcca	12	13	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33936931	T	T	33936931	3	4	146	1	0	0	0	0	1	0	0	0	13872	652	23	4	88	4	RXFP3	5	33936931	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	320656	33936931	146978329	191	126631											
EGFLAM	133584	broad.mit.edu	37	chr5	38425138	38425138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgcacagcaatcaaagCcgactcctacatttgcctct	5	16	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38425138	A	A	38425138	3	1	146	1	0	0	0	0	1	0	0	0	5006	739	26	3	1818	3	EGFLAM	5	38425138	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4488207	38425138	142490122	192	126632											
GHR	2690	broad.mit.edu	37	chr5	42713675	42713675	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagttgtttagatttccaTatgtgtttctatttgttatt	6	5	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42713675	C	C	42713675	1	2	146	0	1	0	0	0	0	0	0	0	6435	1421	49	5		5	GHR	5	42713675	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	4288537	42713675	138201585	193	126633											
ZNF131	7690	broad.mit.edu	37	chr5	43161516	43161516	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgaaggcaccattgaagtGgaagatgaaggcatcgaaac	13	8	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43161516	T	T	43161516	2	4	146	1	0	0	0	0	0	0	0	1	17847	1335	47	2		2	ZNF131	5	43161516	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	447841	43161516	137753744	194	126634											
HMGCR	3156	broad.mit.edu	37	chr5	74655898	74655898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggaccgtaatggctgGggaattgtcacttatggcag	16	6	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74655898	T	T	74655898	3	4	146	1	0	0	0	0	1	0	0	0	7298	1232	43	2	2616	2	HMGCR	5	74655898	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	31494382	74655898	106259362	195	126635											
AGGF1	55109	broad.mit.edu	37	chr5	76342310	76342310	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccaaagtcactgttccaActagtggaaatactatagag	7	11	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76342310	G	G	76342310	3	3	146	1	0	0	0	0	1	0	0	0	382	43	2	5	1031	5	AGGF1	5	76342310	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	1686412	76342310	104572950	196	126636											
RASGRF2	5924	broad.mit.edu	37	chr5	80409612	80409612	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtctccaccaccacacacTggtcagataccactggatct	7	16	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80409612	C	C	80409612	2	2	146	1	0	0	0	0	0	0	0	1	13181	1567	55	5		5	RASGRF2	5	80409612	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	4067302	80409612	100505648	197	126637											
TTC37	9652	broad.mit.edu	37	chr5	94830477	94830477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatagccaactgatttacCgcagtgtacagtaatgcctt	7	12	0	1	rs147416417	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94830477	A	A	94830477	2	1	146	1	0	0	0	0	0	0	0	1	16831	639	23	1		1	TTC37	5	94830477	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	14420865	94830477	86084783	198	126638											
MAN2A1	4124	broad.mit.edu	37	chr5	109110522	109110522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagatcagtaccgaaagaaGtcaaagctttttcgtaccaa	7	9	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109110522	T	T	109110522	3	4	146	1	0	0	0	0	1	0	0	0	9306	1020	36	3	1260	3	MAN2A1	5	109110522	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	14280045	109110522	71804738	199	126639											
FTMT	94033	broad.mit.edu	37	chr5	121187965	121187965	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggcctattacttctccCgggatgacgtggccttgaac	10	13	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121187965	A	A	121187965	2	1	146	1	0	0	0	0	0	0	0	1	6145	643	23	1		1	FTMT	5	121187965	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	12077443	121187965	59727295	200	126640											
LOX	4015	broad.mit.edu	37	chr5	121409740	121409740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacatgcaaatcgcctgtGgtagccatagtcacaggatg	11	9	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121409740	T	T	121409740	3	4	146	1	0	0	0	0	1	0	0	0	8985	1348	47	2	266	2	LOX	5	121409740	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	221775	121409740	59505520	201	126641											
IK	3550	broad.mit.edu	37	chr5	140028040	140028040	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagactgattaaattaacgtCaattttttttgtcaggtgag	9	4	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140028040	T	T	140028040	1	4	146	0	1	0	0	0	0	0	0	0	7678	841	29	4		4	IK	5	140028040	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	18618300	140028040	40887220	202	126642											
IK	3550	broad.mit.edu	37	chr5	140028053	140028053	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaacgtcaattttttttgtCaggtgagccgttctccaacc	7	10	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140028053	T	T	140028053	1	4	146	0	1	0	0	0	0	0	0	0	7678	841	29	4		4	IK	5	140028053	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	13	140028053	40887207	203	126643											
PCDHA7	56141	broad.mit.edu	37	chr5	140215057	140215057	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccctattccagaggacgcCcaaccaggtaccgtcatcac	7	17	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215057	A	A	140215057	2	1	146	1	0	0	0	0	0	0	0	1	11623	610	22	2		2	PCDHA7	5	140215057	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	187004	140215057	40700203	204	126644											
PCDHB14	56122	broad.mit.edu	37	chr5	140604624	140604625	+	Missense_Mutation	DNP	TC	AA	AA													caatggccacctgtttgcccTcaggtcgctggactacgagg							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140604625	AA	AA	140604624	3	1	146	1	0	0	0	0	1	0	0	0	11633	1551	54	5	1549	5	PCDHB14	5	140604624	Missense_Mutation	DNP	TC	TCGA-49-6744-01A-11D-1855-08	389567	140604624	40310636	205	126645											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711999	140711999	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggcgcccctctccgcagAgcccggctacctggtgacca	12	18	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140711999	T	T	140711999	3	4	146	1	0	0	0	0	1	0	0	0	11644	304	11	5	1750	5	PCDHGA1	5	140711999	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	107375	140711999	40203261	206	126646											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774290	140774290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctgctggacagagatgCgctcaagcagagcctcgtgg	14	12	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140774290	A	A	140774290	3	1	146	1	0	0	0	0	1	0	0	0	11654	768	27	3	1912	3	PCDHGA8	5	140774290	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	62291	140774290	40140970	207	126647											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774680	140774680	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccgactcgcggaagagtcAcctgatctttccccagccca	9	17	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140774680	C	C	140774680	3	2	146	1	0	0	0	0	1	0	0	0	11654	159	6	5	2302	5	PCDHGA8	5	140774680	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	390	140774680	40140580	208	126648											
ARAP3	64411	broad.mit.edu	37	chr5	141049415	141049415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagggaggaggatgggacCaatgagagggctgtcaggct	19	6	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141049415	A	A	141049415	1	1	146	0	1	0	0	0	0	0	0	0	842	609	21	2		2	ARAP3	5	141049415	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	274735	141049415	39865845	209	126649											
RBM27	54439	broad.mit.edu	37	chr5	145665588	145665588	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagtctcgctcatggcgaAgatgaaatctgatgctagct	11	8	3	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145665588	G	G	145665588	3	3	146	1	0	0	0	0	1	0	0	0	13235	64	3	5	3260	5	RBM27	5	145665588	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	4616173	145665588	35249672	210	126650											
WWC1	23286	broad.mit.edu	37	chr5	167850491	167850491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaggtctcagggggccCacttcactgtgtgcatctca	12	12	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167850491	A	A	167850491	1	1	146	0	1	0	0	0	0	0	0	0	17538	609	21	2		2	WWC1	5	167850491	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	22184903	167850491	13064769	211	126651											
DOCK2	1794	broad.mit.edu	37	chr5	169126941	169126941	+	Intron	DEL	G	-	-													gtgatctccagaaagacagaGgggagaggtggcgggagggc							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169126941	-	-	169126941	6	5	146	0	1	1	0	1	0	0	0	0	4727	1015	35	0		0	DOCK2	5	169126941	Intron	DEL	G	TCGA-49-6744-01A-11D-1855-08	1276450	169126941	11788319	212	126652											
STK10	6793	broad.mit.edu	37	chr5	171583834	171583834	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaacaaggcatgctccgCaggaaactgacctttggacg	12	11	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171583834	G	G	171583834	1	3	146	0	1	0	0	0	0	0	0	0	15404	725	25	4		4	STK10	5	171583834	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	2456893	171583834	9331426	213	126653											
DDX41	51428	broad.mit.edu	37	chr5	176941689	176941689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggtggggggcagggagCgccagcactcactgtcggat	18	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176941689	A	A	176941689	1	1	146	0	1	0	0	0	0	0	0	0	4394	783	27	3		3	DDX41	5	176941689	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	5357855	176941689	3973571	214	126654											
RMND5B	64777	broad.mit.edu	37	chr5	177574710	177574710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaggaagtggaactcaccCgcttcgctgcccttcccaga	10	15	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177574710	A	A	177574710	1	1	146	0	1	0	0	0	0	0	0	0	13509	667	23	1		1	RMND5B	5	177574710	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	633021	177574710	3340550	215	126655											
RUFY1	80230	broad.mit.edu	37	chr5	178989679	178989679	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattaaagtgagtgagaagtAgttctgccaatttgatgatt	10	3	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178989679	T	T	178989679	1	4	146	0	1	0	0	0	0	0	0	0	13849	435	15	5		5	RUFY1	5	178989679	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	1414969	178989679	1925581	216	126656											
DUSP22	56940	broad.mit.edu	37	chr6	292496	292496	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaacatgccatagtgcgcCtgcgaccacacggccggggc	13	14	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	292496	T	T	292496	1	4	146	0	1	0	0	0	0	0	0	0	4861	696	24	4		4	DUSP22	6	292496	5'UTR	SNP	C	TCGA-49-6744-01A-11D-1855-08		292496	170822571	217	126657											
EXOC2	55770	broad.mit.edu	37	chr6	598815	598815	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacattccacattcttccTataaaaggaaaggagaagat	6	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	598815	C	C	598815	1	2	146	0	1	0	0	0	0	0	0	0	5344	1537	53	5		5	EXOC2	6	598815	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	306319	598815	170516252	218	126658											
KIAA0319	9856	broad.mit.edu	37	chr6	24564366	24564366	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactggtcacatctgtcagcGtaaagaccccaaaggctgac	9	13	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24564366	A	A	24564366	1	1	146	0	1	0	0	0	0	0	0	0	8238	1160	40	4		4	KIAA0319	6	24564366	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	23965551	24564366	146550701	219	126659											
OR2J2	26707	broad.mit.edu	37	chr6	29141761	29141761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagagtgtgtcctactgGtggtgatgtcatatgatcgt	12	7	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29141761	T	T	29141761	3	4	146	1	0	0	0	0	1	0	0	0	11097	1261	44	3	351	3	OR2J2	6	29141761	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	4577395	29141761	141973306	220	126660											
HLA-G	3135	broad.mit.edu	37	chr6	29798227	29798227	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccctgagatccttgggatCttgtgtttgggagcccatgg	13	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29798227	G	G	29798227	1	3	146	0	1	0	0	0	0	0	0	0	7279	928	32	4		4	HLA-G	6	29798227	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	656466	29798227	141316840	221	126661											
BAT2	7916	broad.mit.edu	37	chr6	31598896	31598896	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgagatacttatttccattCtttctgtctgtctcttcagg	6	10	5	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31598896	A	A	31598896	1	1	146	0	1	0	0	0	0	0	0	0	1324	928	32	3		3	BAT2	6	31598896	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1800669	31598896	139516171	222	126662											
HLA-DQA2	3118	broad.mit.edu	37	chr6	32712989	32712989	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagtctcacggtccctctGgccagtacacccatgaattt	7	15	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32712989	A	A	32712989	3	1	146	1	0	0	0	0	1	0	0	0	7272	1348	47	4	142	4	HLA-DQA2	6	32712989	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1114093	32712989	138402078	223	126663											
DNAH8	1769	broad.mit.edu	37	chr6	38818065	38818065	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatattgacaagtcttggatAaaaataatgcagcgagctca	8	6	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38818065	T	T	38818065	2	4	146	1	0	0	0	0	0	0	0	1	4647	352	13	5		5	DNAH8	6	38818065	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	6105076	38818065	132297002	224	126664											
DNAH8	1769	broad.mit.edu	37	chr6	38994242	38994242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggagattgataagcaaGtaacacttaacattgcttcc	8	7	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38994242	T	T	38994242	1	4	146	0	1	0	0	0	0	0	0	0	4647	1044	36	3		3	DNAH8	6	38994242	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	176177	38994242	132120825	225	126665											
FRS3	10817	broad.mit.edu	37	chr6	41740639	41740639	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgatgctgttgcactgcatCagatcctgaaggaggttgaa	12	7	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41740639	A	A	41740639	2	1	146	1	0	0	0	0	0	0	0	1	6122	813	29	3		3	FRS3	6	41740639	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	2746397	41740639	129374428	226	126666											
CYP39A1	51302	broad.mit.edu	37	chr6	46610099	46610099	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccatgtttaagaccattctCctcaagaatcctaatgctga	6	11	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46610099	A	A	46610099	1	1	146	0	1	0	0	0	0	0	0	0	4210	870	30	3		3	CYP39A1	6	46610099	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	4869460	46610099	124504968	227	126667											
PKHD1	5314	broad.mit.edu	37	chr6	51920529	51920529	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagttggaaacttctgggccTggatgcagttcagataaaat	12	6	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51920529	C	C	51920529	5	2	146	1	0	0	0	0	0	0	1	0	12066	1594	55	5	10767	5	PKHD1	6	51920529	Splice_Site	SNP	T	TCGA-49-6744-01A-11D-1855-08	5310430	51920529	119194538	228	126668											
EYS	346007	broad.mit.edu	37	chr6	66044829	66044829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactatcaatttaattataaCtttttgatatgtgatattat	4	3	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66044829	A	A	66044829	1	1	146	0	1	0	0	0	0	0	0	0	5375	580	20	3		3	EYS	6	66044829	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	14124300	66044829	105070238	229	126669											
BAI3	577	broad.mit.edu	37	chr6	69349092	69349092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtattatgtacttggttGgagagctgcttaaaatcaga	10	5	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69349092	T	T	69349092	3	4	146	1	0	0	0	0	1	0	0	0	1305	1339	47	2	527	2	BAI3	6	69349092	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3304263	69349092	101765975	230	126670											
FAM135A	57579	broad.mit.edu	37	chr6	71233697	71233697	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcatctacagatgtgcacCgctatcaaaaatacttcctt	5	11	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71233697	A	A	71233697	2	1	146	1	0	0	0	0	0	0	0	1	5494	639	23	1		1	FAM135A	6	71233697	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	1884605	71233697	99881370	231	126671											
FILIP1	27145	broad.mit.edu	37	chr6	76072432	76072432	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccctgaggttcccatccAggggacttgttggtgtcata	11	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76072432	T	T	76072432	1	4	146	0	1	0	0	0	0	0	0	0	5951	203	7	5		5	FILIP1	6	76072432	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	4838735	76072432	95042635	232	126672											
ELOVL4	6785	broad.mit.edu	37	chr6	80626254	80626254	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagctctcctttgcttctGttttccctgaaattttatat	4	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80626254	T	T	80626254	1	4	146	0	1	0	0	0	0	0	0	0	5118	1392	48	3		3	ELOVL4	6	80626254	3'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08	4553822	80626254	90488813	233	126673											
HS3ST5	222537	broad.mit.edu	37	chr6	114405681	114405681	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgcatgcgcagaacttccCgagccggcgtccaccgcatc	10	18	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114405681	T	T	114405681	1	4	146	0	1	0	0	0	0	0	0	0	7435	667	23	4		4	HS3ST5	6	114405681	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	33779427	114405681	56709386	234	126674											
GPRC6A	222545	broad.mit.edu	37	chr6	117127972	117127972	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accaattatcactagcaatcCacatcttatttatattcatt	1	10	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117127972	G	G	117127972	3	3	146	1	0	0	0	0	1	0	0	0	6794	595	21	4	1900	4	GPRC6A	6	117127972	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2722291	117127972	53987095	235	126675											
RFX6	222546	broad.mit.edu	37	chr6	117245822	117245822	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcctcattctccatcCataaacaaggttcttttcat	2	14	5	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117245822	T	T	117245822	1	4	146	0	1	0	0	0	0	0	0	0	13375	609	21	4		4	RFX6	6	117245822	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	117850	117245822	53869245	236	126676											
STX7	8417	broad.mit.edu	37	chr6	132793371	132793371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagatcctacagtgcactGggtttttttcacattcaata	6	9	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132793371	T	T	132793371	1	4	146	0	1	0	0	0	0	0	0	0	15468	1363	47	2		2	STX7	6	132793371	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	15547549	132793371	38321696	237	126677											
TAAR8	83551	broad.mit.edu	37	chr6	132874369	132874369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgggctggaggaattaGtaagtgctctcaactgcgta	13	6	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132874369	T	T	132874369	3	4	146	1	0	0	0	0	1	0	0	0	15612	1029	36	3	540	3	TAAR8	6	132874369	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	80998	132874369	38240698	238	126678											
PDE7B	27115	broad.mit.edu	37	chr6	136268713	136268713	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatgttgatgtcatgtggAgttatcattctgttgccttt	10	6	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136268713	G	G	136268713	1	3	146	0	1	0	0	0	0	0	0	0	11746	319	11	5		5	PDE7B	6	136268713	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	3394344	136268713	34846354	239	126679											
BCLAF1	9774	broad.mit.edu	37	chr6	136599712	136599712	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgacctcgtctaggactccTagagtgccttctattccaga	8	13	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136599712	C	C	136599712	3	2	146	1	0	0	0	0	1	0	0	0	1388	1521	53	5	2495	5	BCLAF1	6	136599712	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	330999	136599712	34515355	240	126680											
MAP3K5	4217	broad.mit.edu	37	chr6	137018358	137018358	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttaaacatcttctcaccTggatatctctgtaggaaagt	6	9	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137018358	A	A	137018358	3	1	146	1	0	0	0	0	1	0	0	0	9345	1594	55	5	3254	5	MAP3K5	6	137018358	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	418646	137018358	34096709	241	126681											
TULP4	56995	broad.mit.edu	37	chr6	158923658	158923658	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcatccacgctaccctgcGgaggaacaaccgtgaggcta	10	15	1	1	rs143675661		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158923658	A	A	158923658	3	1	146	1	0	0	0	0	1	0	0	0	16902	1116	39	4	3013	4	TULP4	6	158923658	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	21905300	158923658	12191409	242	126682											
FNDC1	84624	broad.mit.edu	37	chr6	159677743	159677743	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggttggaaatgaagggagGaatcaaaatgtttttgtgat	13	1	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159677743	C	C	159677743	1	2	146	0	1	0	0	0	0	0	0	0	6026	1189	41	4		4	FNDC1	6	159677743	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	754085	159677743	11437324	243	126683											
PLG	5340	broad.mit.edu	37	chr6	161139674	161139674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttctcaaagcgtggttccCtagacttttttctttttgga	8	8	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161139674	T	T	161139674	1	4	146	0	1	0	0	0	0	0	0	0	12181	696	24	4		4	PLG	6	161139674	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1461931	161139674	9975393	244	126684											
C6orf118	168090	broad.mit.edu	37	chr6	165715038	165715038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctcttccctgagaccacCgcagggctgccctcctcacc	9	19	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165715038	A	A	165715038	1	1	146	0	1	0	0	0	0	0	0	0	2346	667	23	1		1	C6orf118	6	165715038	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	4575364	165715038	5400029	245	126685											
FSCN1	6624	broad.mit.edu	37	chr7	5643057	5643057	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcaagtgagtgcctcgCtcccacctgtcaccgccccc	8	20	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5643057	T	T	5643057	1	4	146	0	1	0	0	0	0	0	0	0	6127	812	28	4		4	FSCN1	7	5643057	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08		5643057	153495606	246	126686											
OCM	654231	broad.mit.edu	37	chr7	5920599	5920599	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggtagaggggacgtgaggCgggggtgggatttcctcaca	20	6	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5920599	G	G	5920599	1	3	146	0	1	0	0	0	0	0	0	0	10916	783	27	4		4	OCM	7	5920599	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	277542	5920599	153218064	247	126687											
HDAC9	9734	broad.mit.edu	37	chr7	18631328	18631328	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacaggttctgtatttagccGacctgggtacacatccttag	9	11	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18631328	T	T	18631328	1	4	146	0	1	0	0	0	0	0	0	0	7081	1073	37	3		3	HDAC9	7	18631328	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	12710729	18631328	140507335	248	126688											
GPNMB	10457	broad.mit.edu	37	chr7	23296802	23296802	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaataacagtcaccctgcTaactttccttagcatgagtg	7	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23296802	A	A	23296802	1	1	146	0	1	0	0	0	0	0	0	0	6685	1537	53	5		5	GPNMB	7	23296802	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	4665474	23296802	135841861	249	126689											
HOXA1	3198	broad.mit.edu	37	chr7	27134270	27134270	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgggtctcgttgagctgcAgggatgcagcgatctccacc	13	12	2	1	rs41311763		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27134270	T	T	27134270	3	4	146	1	0	0	0	0	1	0	0	0	7355	188	7	5	214	5	HOXA1	7	27134270	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	3837468	27134270	132004393	250	126690											
HOXA9	3205	broad.mit.edu	37	chr7	27204508	27204508	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacacttactgggatcgatgGggggcttgtctccgccgctc	14	12	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27204508	C	C	27204508	3	2	146	1	0	0	0	0	1	0	0	0	7365	1232	43	4	257	4	HOXA9	7	27204508	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	70238	27204508	131934155	251	126691											
NPSR1	387129	broad.mit.edu	37	chr7	34790029	34790029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtgttcggatgccgatGggtagtacgacggggctctg	18	8	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34790029	T	T	34790029	1	4	146	0	1	0	0	0	0	0	0	0	10695	1363	47	2		2	NPSR1	7	34790029	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	7585521	34790029	124348634	252	126692											
POU6F2	11281	broad.mit.edu	37	chr7	39500186	39500186	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggtggatggggttaatctGgaggagatccgagaatttgc	17	4	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39500186	C	C	39500186	2	2	146	1	0	0	0	0	0	0	0	1	12381	1335	47	4		4	POU6F2	7	39500186	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	4710157	39500186	119638477	253	126693											
C7orf10	79783	broad.mit.edu	37	chr7	40789127	40789141	+	Intron	DEL	CCTTTCTTTATTAAT	-	-													ttttggtattttctctagcaCctttctttattaattgtccc							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40789141	-	-	40789127	6	5	146	0	1	1	0	1	0	0	0	0	2401	522	18	0		0	C7orf10	7	40789127	Intron	DEL	CCTTTCTTTATTAAT	TCGA-49-6744-01A-11D-1855-08	1288941	40789127	118349536	254	126694											
HECW1	23072	broad.mit.edu	37	chr7	43508600	43508600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatgctcgcaattttgaaCgctaccagcacaaccgggac	11	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43508600	A	A	43508600	3	1	146	1	0	0	0	0	1	0	0	0	7109	536	19	3	3049	3	HECW1	7	43508600	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2719473	43508600	115630063	255	126695											
CCM2	83605	broad.mit.edu	37	chr7	45115287	45115287	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcaccaggggcagctgtgGccctgtcagggggctttgag	17	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45115287	C	C	45115287	1	2	146	0	1	0	0	0	0	0	0	0	2938	1218	42	4		4	CCM2	7	45115287	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1606687	45115287	114023376	256	126696											
POM121L12	285877	broad.mit.edu	37	chr7	53104090	53104090	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagccgagcctcggcccCtggagcctcagtttttgtga	12	13	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104090	A	A	53104090	2	1	146	1	0	0	0	0	0	0	0	1	12336	668	24	2		2	POM121L12	7	53104090	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	7988803	53104090	106034573	257	126697											
ZNF713	349075	broad.mit.edu	37	chr7	55990882	55990882	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacgtttcaggatgtggccGtggacttcaccagagaggag	15	8	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55990882	T	T	55990882	3	4	146	1	0	0	0	0	1	0	0	0	18245	1145	40	3	82	3	ZNF713	7	55990882	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	2886792	55990882	103147781	258	126698											
C7orf42	55069	broad.mit.edu	37	chr7	66407016	66407016	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagaaatggcagaggtatAgtatgctctgacttctcccg	10	11	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66407016	T	T	66407016	1	4	146	0	1	0	0	0	0	0	0	0	2417	435	15	5		5	C7orf42	7	66407016	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	10416134	66407016	92731647	259	126699											
KIAA1324L	222223	broad.mit.edu	37	chr7	86526823	86526823	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagagtttatcccttaccTgaaatcctctcttgcaggct	7	11	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86526823	G	G	86526823	3	3	146	1	0	0	0	0	1	0	0	0	8294	1594	55	5	421	5	KIAA1324L	7	86526823	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	20119807	86526823	72611840	260	126700											
ADAM22	53616	broad.mit.edu	37	chr7	87758043	87758043	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcctagggtaaaactggtGagtgcaaaaatatgtttaga	12	4	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87758043	T	T	87758043	1	4	146	0	1	0	0	0	0	0	0	0	244	1305	45	3		3	ADAM22	7	87758043	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1231220	87758043	71380620	261	126701											
AKAP9	10142	broad.mit.edu	37	chr7	91708576	91708576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaatgaatgctcattccCtctcagaagaagcagacagt	7	11	3	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91708576	A	A	91708576	3	1	146	1	0	0	0	0	1	0	0	0	459	681	24	2	7251	2	AKAP9	7	91708576	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3950533	91708576	67430087	262	126702											
OR2AE1	81392	broad.mit.edu	37	chr7	99474394	99474394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggagatagatttcttgCcagataggtagttggtagcc	12	6	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99474394	A	A	99474394	3	1	146	1	0	0	0	0	1	0	0	0	11077	739	26	3	712	3	OR2AE1	7	99474394	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	7765818	99474394	59664269	263	126703											
ZAN	7455	broad.mit.edu	37	chr7	100388611	100388611	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgtgagtggcctgtgcGgaaactacgacaagaaccgc	14	10	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100388611	T	T	100388611	4	4	146	1	0	0	0	0	0	1	0	0	17640	1117	39	1	7558	1	ZAN	7	100388611	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	914217	100388611	58750052	264	126704											
SLC12A9	56996	broad.mit.edu	37	chr7	100457848	100457848	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactttattcttggggcctGgtgcaggtgagccttcttct	12	9	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100457848	A	A	100457848	2	1	146	1	0	0	0	0	0	0	0	1	14503	1335	47	4		4	SLC12A9	7	100457848	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	69237	100457848	58680815	265	126705											
MUC17	140453	broad.mit.edu	37	chr7	100680748	100680748	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaccagcactcctgccacCacttctactgaaggcagttc	7	16	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100680748	T	T	100680748	2	4	146	1	0	0	0	0	0	0	0	1	10068	581	21	4		4	MUC17	7	100680748	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	222900	100680748	58457915	266	126706											
CBLL1	79872	broad.mit.edu	37	chr7	107399240	107399240	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccccaggctgcaggtactCctcacttggtatatagccaa	8	14	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107399240	T	T	107399240	3	4	146	1	0	0	0	0	1	0	0	0	2729	855	30	4	1115	4	CBLL1	7	107399240	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6718492	107399240	51739423	267	126707											
LRRN3	54674	broad.mit.edu	37	chr7	110763529	110763529	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accagataacgccttggttgGactggaaaacttagaaagca	10	8	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110763529	C	C	110763529	3	2	146	1	0	0	0	0	1	0	0	0	9123	1174	41	4	703	4	LRRN3	7	110763529	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3364289	110763529	48375134	268	126708											
ZNF277	11179	broad.mit.edu	37	chr7	111970197	111970197	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatacacttaaagatcacAtgaggaaaaaacagcatcgt	6	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111970197	G	G	111970197	3	3	146	1	0	0	0	0	1	0	0	0	17938	217	8	5	753	5	ZNF277	7	111970197	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	1206668	111970197	47168466	269	126709											
PTPRZ1	5803	broad.mit.edu	37	chr7	121616195	121616195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttttatgaagtctttgtGtatcataaaactatcattgt	6	4	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121616195	T	T	121616195	1	4	146	0	1	0	0	0	0	0	0	0	12922	1392	48	3		3	PTPRZ1	7	121616195	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	9645998	121616195	37522468	270	126710											
PTPRZ1	5803	broad.mit.edu	37	chr7	121652388	121652388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttccatttctagcaccaaGggcatgtttccagggtccct	9	12	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121652388	T	T	121652388	3	4	146	1	0	0	0	0	1	0	0	0	12922	991	35	2	3334	2	PTPRZ1	7	121652388	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	36193	121652388	37486275	271	126711											
PTPRZ1	5803	broad.mit.edu	37	chr7	121699092	121699092	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctaatgctttggacccaCtgtgatgattcagccatggt	9	10	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121699092	T	T	121699092	1	4	146	0	1	0	0	0	0	0	0	0	12922	580	20	4		4	PTPRZ1	7	121699092	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	46704	121699092	37439571	272	126712											
SPAM1	6677	broad.mit.edu	37	chr7	123594320	123594320	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccatcactataagaaaccCggttacaatggaagttgctt	7	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123594320	T	T	123594320	2	4	146	1	0	0	0	0	0	0	0	1	15102	639	23	4		4	SPAM1	7	123594320	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	1895228	123594320	35544343	273	126713											
SND1	27044	broad.mit.edu	37	chr7	127361382	127361382	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgccattgttgtgaagctGaactcaggcgattacaagac	11	8	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127361382	T	T	127361382	2	4	146	1	0	0	0	0	0	0	0	1	14958	1277	45	3		3	SND1	7	127361382	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	3767062	127361382	31777281	274	126714											
AKR1D1	6718	broad.mit.edu	37	chr7	137790082	137790082	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttgcaaagacgctggcttGgtgaaatccctgggagtgtc	14	9	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137790082	C	C	137790082	3	2	146	1	0	0	0	0	1	0	0	0	473	1339	47	4	504	4	AKR1D1	7	137790082	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	10428700	137790082	21348581	275	126715											
MGAM	8972	broad.mit.edu	37	chr7	141752752	141752752	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccccttcgcctggatgtcActtaccataagaatgaaatg	7	12	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141752752	T	T	141752752	3	4	146	1	0	0	0	0	1	0	0	0	9634	159	6	5	3225	5	MGAM	7	141752752	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	3962670	141752752	17385911	276	126716											
EPHB6	2051	broad.mit.edu	37	chr7	142564758	142564758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctatggtttccaggtgcGggcccggactgctgccggcc	14	14	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142564758	T	T	142564758	3	4	146	1	0	0	0	0	1	0	0	0	5220	1116	39	1	1708	1	EPHB6	7	142564758	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	812006	142564758	16573905	277	126717											
C7orf34	135927	broad.mit.edu	37	chr7	142637620	142637620	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcatggttttctcaggaggGccattgaggcggacattccc	13	10	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142637620	C	C	142637620	2	2	146	1	0	0	0	0	0	0	0	1	2414	1190	42	4		4	C7orf34	7	142637620	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	72862	142637620	16501043	278	126718											
KEL	3792	broad.mit.edu	37	chr7	142640343	142640343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctattatcccacctccCagtggcccctgttacccaca	4	19	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142640343	A	A	142640343	1	1	146	0	1	0	0	0	0	0	0	0	8212	609	21	2		2	KEL	7	142640343	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	2723	142640343	16498320	279	126719											
OR2F2	135948	broad.mit.edu	37	chr7	143632883	143632883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcctagctgtggtcagGctggcttgtgtggacacctc	13	11	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143632883	T	T	143632883	3	4	146	1	0	0	0	0	1	0	0	0	11091	1194	42	3	560	3	OR2F2	7	143632883	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	992540	143632883	15505780	280	126720											
OR2F2	135948	broad.mit.edu	37	chr7	143633190	143633190	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctctgctgaaccctgtgAtttatagtctaaggaataaa	8	8	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143633190	C	C	143633190	3	2	146	1	0	0	0	0	1	0	0	0	11091	333	12	5	867	5	OR2F2	7	143633190	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	307	143633190	15505473	281	126721											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741008	146741008	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttttccaggcatttcccGgaaacattaactctgacggt	7	12	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146741008	T	T	146741008	4	4	146	1	0	0	0	0	0	1	0	0	3679	1117	39	1	426	1	CNTNAP2	7	146741008	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3107818	146741008	12397655	282	126722											
CNTNAP2	26047	broad.mit.edu	37	chr7	146829427	146829427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcccggacggcttaacCaggacctgttctcagtcagt	12	12	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146829427	A	A	146829427	3	1	146	1	0	0	0	0	1	0	0	0	3679	595	21	2	1204	2	CNTNAP2	7	146829427	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	88419	146829427	12309236	283	126723											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259256	147259256	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgagccttcctgtgaagccTacaaacacctaggacagaca	8	13	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147259256	A	A	147259256	3	1	146	1	0	0	0	0	1	0	0	0	3679	1522	53	5	1850	5	CNTNAP2	7	147259256	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	429829	147259256	11879407	284	126724											
CNTNAP2	26047	broad.mit.edu	37	chr7	147914435	147914435	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgatataactttcaggcaccAgcaacaaatgccagagactc	7	12	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147914435	G	G	147914435	2	3	146	1	0	0	0	0	0	0	0	1	3679	175	7	5		5	CNTNAP2	7	147914435	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	655179	147914435	11224228	285	126725											
KRBA1	84626	broad.mit.edu	37	chr7	149425649	149425649	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctccccactgcagggtctgGagaattgtctcaaggagata	12	10	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149425649	A	A	149425649	3	1	146	1	0	0	0	0	1	0	0	0	8510	1175	41	4	1552	4	KRBA1	7	149425649	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1511214	149425649	9713014	286	126726											
SSPO	23145	broad.mit.edu	37	chr7	149480665	149480665	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcagccgtgtgtggctgtGatcccggcagtgactgcctg	16	11	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149480665	T	T	149480665	3	4	146	1	0	0	0	0	1	0	0	0	15307	1290	45	3	2435	3	SSPO	7	149480665	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	55016	149480665	9657998	287	126727											
SSPO	23145	broad.mit.edu	37	chr7	149481821	149481821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgggatctggacacctgGgtacccagtgtctgggttcc	14	10	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149481821	T	T	149481821	1	4	146	0	1	0	0	0	0	0	0	0	15307	1247	43	2		2	SSPO	7	149481821	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1156	149481821	9656842	288	126728											
GIMAP7	168537	broad.mit.edu	37	chr7	150217081	150217081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatggctgagagtgaggacCgctccctgaggatcgttctg	15	10	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150217081	A	A	150217081	3	1	146	1	0	0	0	0	1	0	0	0	6448	652	23	1	21	1	GIMAP7	7	150217081	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	735260	150217081	8921582	289	126729											
MLL3	58508	broad.mit.edu	37	chr7	152008931	152008931	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatggcatctggaagcccaaCcagactgagttcatcccaca	8	13	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152008931	G	G	152008931	3	3	146	1	0	0	0	0	1	0	0	0	9715	507	18	4	14264	4	MLL3	7	152008931	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1791850	152008931	7129732	290	126730											
CSMD1	64478	broad.mit.edu	37	chr8	3216497	3216497	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actttatagatgagctaattCaagcccagagcagttaggca	9	8	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3216497	T	T	3216497	1	4	146	0	1	0	0	0	0	0	0	0	3978	841	29	4		4	CSMD1	8	3216497	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08		3216497	143147525	291	126731											
RP1L1	94137	broad.mit.edu	37	chr8	10467307	10467307	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctctgcagaggcagaggctCttcctgcttcctcctcctgg	11	15	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10467307	A	A	10467307	3	1	146	1	0	0	0	0	1	0	0	0	13644	913	32	3	2905	3	RP1L1	8	10467307	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	7250810	10467307	135896715	292	126732											
SGCZ	137868	broad.mit.edu	37	chr8	13965763	13965763	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggggtagcatgaataTagcagtcagtataagcaagt	13	6	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13965763	C	C	13965763	1	2	146	0	1	0	0	0	0	0	0	0	14317	1421	49	5		5	SGCZ	8	13965763	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	3498456	13965763	132398259	293	126733											
PSD3	23362	broad.mit.edu	37	chr8	18393390	18393390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgacttcttcagtcctgCagcctcgctttcatcgttac	8	14	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18393390	A	A	18393390	3	1	146	1	0	0	0	0	1	0	0	0	12754	710	25	3	140	3	PSD3	8	18393390	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4427627	18393390	127970632	294	126734											
REEP4	80346	broad.mit.edu	37	chr8	21996976	21996976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcaatgttgaggccccGcttcccgaagctgagcacgg	15	13	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21996976	T	T	21996976	2	4	146	1	0	0	0	0	0	0	0	1	13315	1086	38	3		3	REEP4	8	21996976	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	3603586	21996976	124367046	295	126735											
NRG1	3084	broad.mit.edu	37	chr8	32463156	32463156	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagtgatcagcaaattaGgaaatgacagtgcctctgcc	10	9	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32463156	A	A	32463156	3	1	146	1	0	0	0	0	1	0	0	0	10742	1001	35	4	1116	4	NRG1	8	32463156	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	10466180	32463156	113900866	296	126736											
PPAPDC1B	84513	broad.mit.edu	37	chr8	38125374	38125374	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctgttctggtgggtaagGgctgaggcagatgctggggt	18	6	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38125374	A	A	38125374	1	1	146	0	1	0	0	0	0	0	0	0	12390	1247	43	4		4	PPAPDC1B	8	38125374	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	5662218	38125374	108238648	297	126737											
ANK1	286	broad.mit.edu	37	chr8	41550708	41550708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtcttcccactgggcttGgtctgttcctcctgtaacag	9	12	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41550708	T	T	41550708	3	4	146	1	0	0	0	0	1	0	0	0	620	1357	47	2	2479	2	ANK1	8	41550708	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3425334	41550708	104813314	298	126738											
ZFHX4	79776	broad.mit.edu	37	chr8	77616716	77616716	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaatctaacaggggagatCgtttaccagcctgatgggtc	12	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77616716	A	A	77616716	2	1	146	1	0	0	0	0	0	0	0	1	17761	874	31	3		3	ZFHX4	8	77616716	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	36066008	77616716	68747306	299	126739											
ZFHX4	79776	broad.mit.edu	37	chr8	77766156	77766156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattacgcatcagaaaaaGcagtgttacaaggatgaaga	10	5	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77766156	T	T	77766156	3	4	146	1	0	0	0	0	1	0	0	0	17761	962	34	3	7033	3	ZFHX4	8	77766156	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	149440	77766156	68597866	300	126740											
RUNX1T1	862	broad.mit.edu	37	chr8	93003923	93003923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgtcgataggagtccCtgtagtggtgggcaatggcc	18	7	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93003923	A	A	93003923	3	1	146	1	0	0	0	0	1	0	0	0	13858	681	24	2	903	2	RUNX1T1	8	93003923	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	15237767	93003923	53360099	301	126741											
VPS13B	157680	broad.mit.edu	37	chr8	100520069	100520069	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtactgacaagctgaacaGacgcaccttgttggttcgac	10	11	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100520069	T	T	100520069	3	4	146	1	0	0	0	0	1	0	0	0	17317	942	33	3	4529	3	VPS13B	8	100520069	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	7516146	100520069	45843953	302	126742											
ANGPT1	284	broad.mit.edu	37	chr8	108306234	108306234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttgtattacagtccaaCctcccccattgacatccata	5	13	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108306234	A	A	108306234	3	1	146	1	0	0	0	0	1	0	0	0	610	507	18	3	544	3	ANGPT1	8	108306234	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	7786165	108306234	38057788	303	126743											
CSMD3	114788	broad.mit.edu	37	chr8	114448979	114448979	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttttaatccccattttcttCatcaggatgaagtctaggcg	7	10	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114448979	A	A	114448979	3	1	146	1	0	0	0	0	1	0	0	0	3980	826	29	3	11364	3	CSMD3	8	114448979	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6142745	114448979	31915043	304	126744											
CSMD3	114788	broad.mit.edu	37	chr8	114449164	114449164	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgcgcggtcacagctcGgagtgaatggtgtttctggg	17	7	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114449164	C	C	114449164	1	2	146	0	1	0	0	0	0	0	0	0	3980	1131	39	4		4	CSMD3	8	114449164	5'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08	185	114449164	31914858	305	126745											
ATAD2	29028	broad.mit.edu	37	chr8	124357109	124357110	+	Intron	DNP	CC	AA	AA													ttgaaagtataatgataccgCcccacataaattacctcttc							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	124357110	AA	AA	124357109	1	1	146	0	1	0	0	0	0	0	0	0	1075	754	26	3		3	ATAD2	8	124357109	Intron	DNP	CC	TCGA-49-6744-01A-11D-1855-08	9907945	124357109	22006913	306	126746											
TG	7038	broad.mit.edu	37	chr8	133882039	133882039	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccaacggcagtgaagtgcTgggcagcaggcagccaggac	16	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133882039	C	C	133882039	3	2	146	1	0	0	0	0	1	0	0	0	15936	1580	55	5	252	5	TG	8	133882039	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	9524930	133882039	12481983	307	126747											
FAM135B	51059	broad.mit.edu	37	chr8	139151231	139151231	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggggaaaccactgacctGttttttggcttagttggtag	14	6	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139151231	C	C	139151231	3	2	146	1	0	0	0	0	1	0	0	0	5495	1377	48	4	333	4	FAM135B	8	139151231	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	5269192	139151231	7212791	308	126748											
FAM135B	51059	broad.mit.edu	37	chr8	139180333	139180333	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagcgtccagggaagagtcAgaggtttccaaaccgttgcc	13	10	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139180333	T	T	139180333	1	4	146	0	1	0	0	0	0	0	0	0	5495	203	7	5		5	FAM135B	8	139180333	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	29102	139180333	7183689	309	126749											
TSTA3	7264	broad.mit.edu	37	chr8	144698279	144698279	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggccaccctcacttacccaGaagtccaaattgtatttgat	7	12	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144698279	A	A	144698279	2	1	146	1	0	0	0	0	0	0	0	1	16799	933	33	4		4	TSTA3	8	144698279	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	5517946	144698279	1665743	310	126750											
TESK1	7016	broad.mit.edu	37	chr9	35606261	35606261	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtctgtgtgcaccagggAcagctgcacgctcttacaga	13	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35606261	T	T	35606261	2	4	146	1	0	0	0	0	0	0	0	1	15889	262	10	5		5	TESK1	9	35606261	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08		35606261	105607170	311	126751											
GLIPR2	152007	broad.mit.edu	37	chr9	36147684	36147684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcagcctgtccacatgGcctaaggtttgagctgggtg	14	10	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36147684	T	T	36147684	1	4	146	0	1	0	0	0	0	0	0	0	6508	1218	42	3		3	GLIPR2	9	36147684	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	541423	36147684	105065747	312	126752											
TRPM6	140803	broad.mit.edu	37	chr9	77377968	77377968	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctgcaggtgtcccacctGgctgtccaaagacagtaagg	11	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377968	A	A	77377968	4	1	146	1	0	0	0	0	0	1	0	0	16715	1357	47	4	2505	4	TRPM6	9	77377968	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	41230284	77377968	63835463	313	126753											
KIF27	55582	broad.mit.edu	37	chr9	86474030	86474030	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggaaatcactcaagtgatCcatcatacagcacctccagt	7	12	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86474030	G	G	86474030	1	3	146	0	1	0	0	0	0	0	0	0	8366	870	30	4		4	KIF27	9	86474030	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	9096062	86474030	54739401	314	126754											
SEMA4D	10507	broad.mit.edu	37	chr9	92002517	92002517	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcggcccgtgcctcgctgtCgatgcactgcagggagaaaa	15	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92002517	T	T	92002517	3	4	146	1	0	0	0	0	1	0	0	0	14147	884	31	4	2064	4	SEMA4D	9	92002517	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	5528487	92002517	49210914	315	126755											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112900428	112900428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgttcaagagaaaagGgatgtattaccaaagattct	8	7	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112900428	T	T	112900428	3	4	146	1	0	0	0	0	1	0	0	0	11504	1223	43	2	2634	2	PALM2-AKAP2	9	112900428	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	20897911	112900428	28313003	316	126756											
PRPF4	9128	broad.mit.edu	37	chr9	116041389	116041389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcacactttttggagagGgtcctgctgaaagaagagaa	11	8	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116041389	T	T	116041389	3	4	146	1	0	0	0	0	1	0	0	0	12676	1232	43	2	383	2	PRPF4	9	116041389	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3140961	116041389	25172042	317	126757											
PAPPA	5069	broad.mit.edu	37	chr9	119094809	119094809	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attccacctctgccccataaCtagttgtgaggatcagctta	7	12	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119094809	G	G	119094809	1	3	146	0	1	0	0	0	0	0	0	0	11526	580	20	4		4	PAPPA	9	119094809	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	3053420	119094809	22118622	318	126758											
RBM18	92400	broad.mit.edu	37	chr9	125014320	125014320	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccactcagcctgaagtgtgaGataaaagcaggagataattt	10	7	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125014320	T	T	125014320	1	4	146	0	1	0	0	0	0	0	0	0	13228	957	33	3		3	RBM18	9	125014320	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	5919511	125014320	16199111	319	126759											
RC3H2	54542	broad.mit.edu	37	chr9	125620515	125620515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctagtctattctccataCacttaaaataaaaaggttaa	3	9	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125620515	A	A	125620515	1	1	146	0	1	0	0	0	0	0	0	0	13275	493	17	3		3	RC3H2	9	125620515	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	606195	125620515	15592916	320	126760											
NAIF1	203245	broad.mit.edu	37	chr9	130829231	130829231	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgttgacccttctcaggatGccgtgccaggccgcactctt	11	15	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130829231	A	A	130829231	2	1	146	1	0	0	0	0	0	0	0	1	10240	1306	46	4		4	NAIF1	9	130829231	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	5208716	130829231	10384200	321	126761											
CELF2	10659	broad.mit.edu	37	chr10	11356044	11356044	+	Intron	SNP	C	G	G													atgacagaaggatttccagtCtcggctctcactcacctcgt							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11356044	G	G	11356044	1	3	146	0	1	0	0	0	0	0	0	0	3246	928	32	4		4	CELF2	10	11356044	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08		11356044	124178703	322	126762	549	2									
CELF2	10659	broad.mit.edu	37	chr10	11356047	11356047	+	Intron	SNP	G	T	T													acagaaggatttccagtctcGgctctcactcacctcgtgtc					rs146786975	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11356047	T	T	11356047	1	4	146	0	1	0	0	0	0	0	0	0	3246	1131	39	1		1	CELF2	10	11356047	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	3	11356047	124178700	323	126763	549	2									
CUBN	8029	broad.mit.edu	37	chr10	16975090	16975090	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttataatgttctcaccatcTcgtatcacaaggctatcata	4	10	4	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16975090	A	A	16975090	2	1	146	1	0	0	0	0	0	0	0	1	4084	1538	54	5		5	CUBN	10	16975090	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	5619043	16975090	118559657	324	126764											
PIP4K2A	5305	broad.mit.edu	37	chr10	22880511	22880511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtgagaaatcgctacGcatgttaatcttcttggagt	10	8	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22880511	T	T	22880511	1	4	146	0	1	0	0	0	0	0	0	0	12031	1102	38	3		3	PIP4K2A	10	22880511	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	5905421	22880511	112654236	325	126765											
CUL2	8453	broad.mit.edu	37	chr10	35349836	35349836	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catatagtctgcacccttgcTgtattcttcccagtacctat	5	13	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35349836	A	A	35349836	3	1	146	1	0	0	0	0	1	0	0	0	4088	1580	55	5	2026	5	CUL2	10	35349836	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	12469325	35349836	100184911	326	126766											
ANKRD30A	91074	broad.mit.edu	37	chr10	37423048	37423048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtagtttttgaattacaGtgagttcacttcatcagcca	8	8	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37423048	T	T	37423048	1	4	146	0	1	0	0	0	0	0	0	0	658	1044	36	3		3	ANKRD30A	10	37423048	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	2073212	37423048	98111699	327	126767											
ZNF33B	7582	broad.mit.edu	37	chr10	43088981	43088981	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaaaaggatttcccacactCaagacattcaaaaggtttct	5	10	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43088981	G	G	43088981	3	3	146	1	0	0	0	0	1	0	0	0	17981	835	29	4	923	4	ZNF33B	10	43088981	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	5665933	43088981	92445766	328	126768											
MARCH8	220972	broad.mit.edu	37	chr10	45953764	45953764	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcggaatgacagattcCatatccatgtttattttcaa	7	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45953764	A	A	45953764	4	1	146	1	0	0	0	0	0	1	0	0	9399	603	21	2	80	2	MARCH8	10	45953764	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2864783	45953764	89580983	329	126769											
ZWINT	11130	broad.mit.edu	37	chr10	58118214	58118214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctccagcaggttgtagacCaacagccttggagaaataca	9	10	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58118214	A	A	58118214	3	1	146	1	0	0	0	0	1	0	0	0	18378	594	21	2	38	2	ZWINT	10	58118214	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	12164450	58118214	77416533	330	126770											
MYPN	84665	broad.mit.edu	37	chr10	69954182	69954182	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcactgcaaaatgaggcgAgaaggagatgggacatgctc	15	7	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69954182	T	T	69954182	2	4	146	1	0	0	0	0	0	0	0	1	10192	291	11	5		5	MYPN	10	69954182	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	11835968	69954182	65580565	331	126771											
ADAMTS14	140766	broad.mit.edu	37	chr10	72511354	72511354	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaggagatggacacctatGagtgggcgctcaagagctgg	17	7	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72511354	T	T	72511354	4	4	146	1	0	0	0	0	0	1	0	0	259	1291	45	3	2623	3	ADAMTS14	10	72511354	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	2557172	72511354	63023393	332	126772											
CHST3	9469	broad.mit.edu	37	chr10	73765502	73765502	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctctccgcaggacaagggTgtcccccacctgaagacggc	12	15	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73765502	A	A	73765502	1	1	146	0	1	0	0	0	0	0	0	0	3436	1711	59	5		5	CHST3	10	73765502	5'UTR	SNP	T	TCGA-49-6744-01A-11D-1855-08	1254148	73765502	61769245	333	126773											
PDE6C	5146	broad.mit.edu	37	chr10	95380394	95380394	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgtctctttcagaacagCcatttttctgacttcatgga	7	10	4	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95380394	T	T	95380394	2	4	146	1	0	0	0	0	0	0	0	1	11741	738	26	4		4	PDE6C	10	95380394	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	21614892	95380394	40154353	334	126774											
CHUK	1147	broad.mit.edu	37	chr10	101977791	101977791	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccattaatacaaaacatctTggctgcttcaaagtaaggtc	6	9	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101977791	A	A	101977791	2	1	146	1	0	0	0	0	0	0	0	1	3447	1799	63	5		5	CHUK	10	101977791	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	6597397	101977791	33556956	335	126775											
FAM178A	55719	broad.mit.edu	37	chr10	102683760	102683760	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagaataaattccctgaAaaaagaaaaaggaactctgt	7	6	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102683760	G	G	102683760	2	3	146	1	0	0	0	0	0	0	0	1	5548	11	1	5		5	FAM178A	10	102683760	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	705969	102683760	32850987	336	126776											
CALHM1	255022	broad.mit.edu	37	chr10	105217833	105217833	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagttgggaagatgccCcccacacctcggagctccac	10	17	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105217833	G	G	105217833	1	3	146	0	1	0	0	0	0	0	0	0	2608	638	22	4		4	CALHM1	10	105217833	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	2534073	105217833	30316914	337	126777											
OBFC1	79991	broad.mit.edu	37	chr10	105648807	105648807	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttccagggcaccagggcatCacttgtacattataccactt	7	13	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105648807	A	A	105648807	1	1	146	0	1	0	0	0	0	0	0	0	10902	841	29	3		3	OBFC1	10	105648807	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	430974	105648807	29885940	338	126778											
SORCS3	22986	broad.mit.edu	37	chr10	106865208	106865208	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccgagacaactagaagtGggccttttgcccgctccatt	11	12	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106865208	T	T	106865208	3	4	146	1	0	0	0	0	1	0	0	0	15046	1348	47	2	1173	2	SORCS3	10	106865208	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1216401	106865208	28669539	339	126779											
SORCS1	114815	broad.mit.edu	37	chr10	108447984	108447984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggtccccccttagatccGtgtccggcgcctgcagcaaa	12	16	0	1	rs140516942	byFrequency;by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108447984	T	T	108447984	3	4	146	1	0	0	0	0	1	0	0	0	15044	1145	40	3	2282	3	SORCS1	10	108447984	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1582776	108447984	27086763	340	126780											
SLC18A2	6571	broad.mit.edu	37	chr10	119029956	119029956	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcttcgaagtccaccTgccaaagaagaaaaaatggt	7	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119029956	A	A	119029956	2	1	146	1	0	0	0	0	0	0	0	1	14539	1567	55	5		5	SLC18A2	10	119029956	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	10581972	119029956	16504791	341	126781											
TACC2	10579	broad.mit.edu	37	chr10	124008071	124008071	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcccccactggtgaggctGagttgcatctgaggcctcgg	14	12	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124008071	T	T	124008071	1	4	146	0	1	0	0	0	0	0	0	0	15621	1305	45	3		3	TACC2	10	124008071	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	4978115	124008071	11526676	342	126782											
PSTK	118672	broad.mit.edu	37	chr10	124740146	124740146	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcagggttgggccatcGgtgttgtcgcgtatgatgac	17	7	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124740146	A	A	124740146	3	1	146	1	0	0	0	0	1	0	0	0	12826	1116	39	4	153	4	PSTK	10	124740146	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	732075	124740146	10794601	343	126783											
EBF3	253738	broad.mit.edu	37	chr10	131640445	131640445	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctgaaggagttgacgCccatcatgcccgtgtgtgca	14	11	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131640445	G	G	131640445	3	3	146	1	0	0	0	0	1	0	0	0	4922	739	26	4	391	4	EBF3	10	131640445	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6900299	131640445	3894302	344	126784											
STIM1	6786	broad.mit.edu	37	chr11	4103359	4103359	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttctgaagcatcatacagaGatgttggagagtcttagtag	12	5	3	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4103359	A	A	4103359	1	1	146	0	1	0	0	0	0	0	0	0	15401	957	33	4		4	STIM1	11	4103359	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08		4103359	130903157	345	126785											
MMP26	56547	broad.mit.edu	37	chr11	5011842	5011842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggattatcaattaccCacatgatatgaagccatccg	6	12	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5011842	A	A	5011842	3	1	146	1	0	0	0	0	1	0	0	0	9757	594	21	2	345	2	MMP26	11	5011842	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	908483	5011842	129994674	346	126786											
OR51B5	282763	broad.mit.edu	37	chr11	5364598	5364598	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagtacatgggctcatgaaGattgtgatcttccttaatga	10	6	2	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5364598	T	T	5364598	3	4	146	1	0	0	0	0	1	0	0	0	11185	942	33	3	785	3	OR51B5	11	5364598	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	352756	5364598	129641918	347	126787											
TRIM6-TRIM34	445372	broad.mit.edu	37	chr11	5624904	5624904	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttgctggctttgtgagcGgtctcaggagcaccgtggtc	14	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5624904	A	A	5624904	3	1	146	1	0	0	0	0	1	0	0	0	16659	1116	39	4	452	4	TRIM6-TRIM34	11	5624904	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	260306	5624904	129381612	348	126788											
OR52E6	390078	broad.mit.edu	37	chr11	5862540	5862540	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaagaccaaacataatgttGactttgatgctggcacaggc	9	10	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5862540	T	T	5862540	2	4	146	1	0	0	0	0	0	0	0	1	11211	1277	45	3		3	OR52E6	11	5862540	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	237636	5862540	129143976	349	126789											
DCHS1	8642	broad.mit.edu	37	chr11	6650685	6650685	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgtcaacatgtacctGtcaggttgatctcctcctgt	9	12	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6650685	A	A	6650685	3	1	146	1	0	0	0	0	1	0	0	0	4320	1377	48	4	4777	4	DCHS1	11	6650685	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	788145	6650685	128355831	350	126790											
OR2AG1	144125	broad.mit.edu	37	chr11	6806622	6806622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctcctactggccttcatGgcctatgacaggtatgtggc	11	12	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6806622	T	T	6806622	3	4	146	1	0	0	0	0	1	0	0	0	11078	1348	47	2	356	2	OR2AG1	11	6806622	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	155937	6806622	128199894	351	126791											
SYT9	143425	broad.mit.edu	37	chr11	7324269	7324269	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgatctttgcttctttgcaGatatctcagtgagcctgctg	9	9	3	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7324269	C	C	7324269	5	2	146	1	0	0	0	0	0	0	1	0	15600	956	33	4	151	4	SYT9	11	7324269	Splice_Site	SNP	G	TCGA-49-6744-01A-11D-1855-08	517647	7324269	127682247	352	126792											
DENND5A	23258	broad.mit.edu	37	chr11	9229218	9229218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagagtattacaataaagCagtgttattcaaactttttt	5	5	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9229218	A	A	9229218	1	1	146	0	1	0	0	0	0	0	0	0	4476	725	25	3		3	DENND5A	11	9229218	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1904949	9229218	125777298	353	126793											
LUZP2	338645	broad.mit.edu	37	chr11	25098875	25098875	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttaattgctacttttgtagGagggcagaccgtgttccatg	11	7	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25098875	A	A	25098875	3	1	146	1	0	0	0	0	1	0	0	0	9174	1188	41	4	901	4	LUZP2	11	25098875	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	15869657	25098875	109907641	354	126794											
LDLRAD3	143458	broad.mit.edu	37	chr11	36057670	36057670	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagagccagctgctccccGggaacaacttcaccaatgag	10	14	1	2	rs144816501		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36057670	C	C	36057670	3	2	146	1	0	0	0	0	1	0	0	0	8779	1116	39	4	70	4	LDLRAD3	11	36057670	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	10958795	36057670	98948846	355	126795											
AGBL2	79841	broad.mit.edu	37	chr11	47689012	47689012	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagaaagtctccctctgcCccaatctccatccccttttt	3	17	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47689012	T	T	47689012	1	4	146	0	1	0	0	0	0	0	0	0	376	638	22	4		4	AGBL2	11	47689012	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	11631342	47689012	87317504	356	126796											
OR4A5	81318	broad.mit.edu	37	chr11	51412225	51412225	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcaggcaaggaagaaataCattggggaacccaaggaagg	15	6	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51412225	T	T	51412225	3	4	146	1	0	0	0	0	1	0	0	0	11137	478	17	4	780	4	OR4A5	11	51412225	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3723213	51412225	83594291	357	126797											
OR4P4	81300	broad.mit.edu	37	chr11	55406405	55406406	+	Missense_Mutation	DNP	AC	CA	CA													attggcctgttctaatatacAcatgataggtctcttagtca							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	55406406	CA	CA	55406405	3	2	146	1	0	0	0	0	1	0	0	0	11174	159	6	5	574	5	OR4P4	11	55406405	Missense_Mutation	DNP	AC	TCGA-49-6744-01A-11D-1855-08	3994180	55406405	79600111	358	126798											
OR5L2	26338	broad.mit.edu	37	chr11	55594859	55594859	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcaggtcagctctcggctCcacacccccgtgtacttttt	7	15	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55594859	A	A	55594859	2	1	146	1	0	0	0	0	0	0	0	1	11265	842	30	3		3	OR5L2	11	55594859	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	188454	55594859	79411657	359	126799											
P2RX3	5024	broad.mit.edu	37	chr11	57114033	57114033	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtgggttttcttgcaCgagaaggcttaccaggtacg	13	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57114033	T	T	57114033	2	4	146	1	0	0	0	0	0	0	0	1	11435	535	19	4		4	P2RX3	11	57114033	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	1519174	57114033	77892483	360	126800											
OR5B17	219965	broad.mit.edu	37	chr11	58125859	58125859	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctggtatcccttaccTgtgtgcctcttaagaatggt	10	10	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58125859	A	A	58125859	2	1	146	1	0	0	0	0	0	0	0	1	11243	1567	55	5		5	OR5B17	11	58125859	Silent	SNP	T	TCGA-49-6744-01A-11D-1855-08	1011826	58125859	76880657	361	126801											
VWCE	220001	broad.mit.edu	37	chr11	61026563	61026563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggaccatgagctcctgCcgggcttgtaggtaaagtct	14	9	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61026563	T	T	61026563	3	4	146	1	0	0	0	0	1	0	0	0	17372	739	26	4	419	4	VWCE	11	61026563	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2900704	61026563	73979953	362	126802											
DDB1	1642	broad.mit.edu	37	chr11	61084039	61084039	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaccgcagtggccataatCctggaacaaggaccaaggat	11	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61084039	A	A	61084039	3	1	146	1	0	0	0	0	1	0	0	0	4356	869	30	3	2264	3	DDB1	11	61084039	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	57476	61084039	73922477	363	126803											
CCDC88B	283234	broad.mit.edu	37	chr11	64111737	64111737	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccccaggcctcagactggtCcccgcaagagtcaggctctc	10	18	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64111737	G	G	64111737	3	3	146	1	0	0	0	0	1	0	0	0	2892	855	30	4	1778	4	CCDC88B	11	64111737	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3027698	64111737	70894779	364	126804											
SIPA1	6494	broad.mit.edu	37	chr11	65417575	65417575	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagtgctcttgccccctttCtgacctgcccacctgatccc	7	19	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65417575	T	T	65417575	1	4	146	0	1	0	0	0	0	0	0	0	14441	928	32	4		4	SIPA1	11	65417575	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1305838	65417575	69588941	365	126805											
IGHMBP2	3508	broad.mit.edu	37	chr11	68682307	68682307	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggttctgtgctgcgcccCctccaacatcgccgtggaca	10	17	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68682307	T	T	68682307	3	4	146	1	0	0	0	0	1	0	0	0	7661	623	22	4	750	4	IGHMBP2	11	68682307	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3264732	68682307	66324209	366	126806											
NUMA1	4926	broad.mit.edu	37	chr11	71740271	71740271	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctgtcaatgatcttgatGaagatgctgcagtcctggag	11	7	3	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71740271	T	T	71740271	3	4	146	1	0	0	0	0	1	0	0	0	10845	1281	45	3	6335	3	NUMA1	11	71740271	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3057964	71740271	63266245	367	126807											
PAK1	5058	broad.mit.edu	37	chr11	77051741	77051741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatgcaagtttctgtcaCcacatctgtcaaggagcctc	7	13	4	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77051741	A	A	77051741	3	1	146	1	0	0	0	0	1	0	0	0	11493	507	18	3	644	3	PAK1	11	77051741	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	5311470	77051741	57954775	368	126808											
HEPHL1	341208	broad.mit.edu	37	chr11	93779135	93779135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctatttcataagtaagGtaactgtcagagttaaagag	9	5	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93779135	T	T	93779135	1	4	146	0	1	0	0	0	0	0	0	0	7122	1276	44	3		3	HEPHL1	11	93779135	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	16727394	93779135	41227381	369	126809											
CASP5	838	broad.mit.edu	37	chr11	104874001	104874001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatacagagagcacagcacCtcatcatgattttttttaca	5	10	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104874001	A	A	104874001	3	1	146	1	0	0	0	0	1	0	0	0	2700	695	24	2	785	2	CASP5	11	104874001	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	11094866	104874001	30132515	370	126810											
CASP1	834	broad.mit.edu	37	chr11	104905937	104905937	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtattgggaaatactcactGtgcatgcatatgcatgtctt	9	7	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104905937	C	C	104905937	1	2	146	0	1	0	0	0	0	0	0	0	2694	1392	48	4		4	CASP1	11	104905937	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	31936	104905937	30100579	371	126811											
SIK2	23235	broad.mit.edu	37	chr11	111573994	111573994	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggctaaccatagcccaaatCaaggagcataaatggatgct	9	10	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111573994	G	G	111573994	3	3	146	1	0	0	0	0	1	0	0	0	14431	816	29	4	821	4	SIK2	11	111573994	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6668057	111573994	23432522	372	126812											
C12orf5	57103	broad.mit.edu	37	chr12	4430432	4430432	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgacgggacgcggctccGggaacatggctcgcttcgct	14	15	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4430432	T	T	4430432	1	4	146	0	1	0	0	0	0	0	0	0	1707	1131	39	1		1	C12orf5	12	4430432	5'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08		4430432	129421463	373	126813											
GALNT8	26290	broad.mit.edu	37	chr12	4835766	4835766	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgaagagggcgaaagatGaagtacgccctcttctaaag	11	9	2	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4835766	A	A	4835766	3	1	146	1	0	0	0	0	1	0	0	0	6281	1291	45	4	286	4	GALNT8	12	4835766	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	405334	4835766	129016129	374	126814											
GALNT8	26290	broad.mit.edu	37	chr12	4848400	4848400	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catattcgtgaatgaagctcTgtccattatacaacgggcca	8	10	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4848400	A	A	4848400	3	1	146	1	0	0	0	0	1	0	0	0	6281	1580	55	5	591	5	GALNT8	12	4848400	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	12634	4848400	129003495	375	126815											
CD163L1	283316	broad.mit.edu	37	chr12	7521434	7521434	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatatttctgcagtccccAgtcttctttgattatcatag	5	11	5	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7521434	C	C	7521434	1	2	146	0	1	0	0	0	0	0	0	0	2998	203	7	5		5	CD163L1	12	7521434	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	2673034	7521434	126330461	376	126816											
C12orf59	120939	broad.mit.edu	37	chr12	10332281	10332281	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttccccagattaatcaacTctcagaagagtctgaaagga	7	9	3	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10332281	A	A	10332281	1	1	146	0	1	0	0	0	0	0	0	0	1715	1566	54	5		5	C12orf59	12	10332281	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	2810847	10332281	123519614	377	126817											
SLCO1B1	10599	broad.mit.edu	37	chr12	21325692	21325692	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttgagatatcctcttctCttgttggttttattgacgga	9	6	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21325692	A	A	21325692	3	1	146	1	0	0	0	0	1	0	0	0	14837	913	32	3	199	3	SLCO1B1	12	21325692	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	10993411	21325692	112526203	378	126818											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	146	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4072593	25398285	108453610	379	126819											
DENND5B	160518	broad.mit.edu	37	chr12	31605417	31605417	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacacaaattagcctgaaaGagaaaaatgaaatacaaagg	7	5	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31605417	A	A	31605417	1	1	146	0	1	0	0	0	0	0	0	0	4477	957	33	4		4	DENND5B	12	31605417	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	6207132	31605417	102246478	380	126820											
PDZRN4	29951	broad.mit.edu	37	chr12	41966757	41966757	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagctagatgacatcatgGagcatccagaaaagtctgac	10	8	2	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41966757	T	T	41966757	4	4	146	1	0	0	0	0	0	1	0	0	11804	1175	41	3	2287	3	PDZRN4	12	41966757	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	10361340	41966757	91885138	381	126821											
ANO6	196527	broad.mit.edu	37	chr12	45803119	45803119	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataatattcgttctaatttAtaaattgttctttttggcag	6	4	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45803119	G	G	45803119	1	3	146	0	1	0	0	0	0	0	0	0	701	464	16	5		5	ANO6	12	45803119	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	3836362	45803119	88048776	382	126822											
NCKAP1L	3071	broad.mit.edu	37	chr12	54922001	54922001	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggagaagggattggatccTaatctatgttttcttggcca	12	6	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54922001	A	A	54922001	1	1	146	0	1	0	0	0	0	0	0	0	10317	1537	53	5		5	NCKAP1L	12	54922001	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	9118882	54922001	78929894	383	126823											
DNAJC14	85406	broad.mit.edu	37	chr12	56221779	56221779	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acttcgtttccgacccagccGatgtcgaccaggggacctgg	12	14	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56221779	A	A	56221779	3	1	146	1	0	0	0	0	1	0	0	0	4673	1057	37	4	1468	4	DNAJC14	12	56221779	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1299778	56221779	77630116	384	126824											
MMP19	4327	broad.mit.edu	37	chr12	56231471	56231471	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgccacaccttgtctcctgaGagcatgtgaggaaagaacaa	10	11	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56231471	C	C	56231471	1	2	146	0	1	0	0	0	0	0	0	0	9750	957	33	4		4	MMP19	12	56231471	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	9692	56231471	77620424	385	126825											
SHMT2	6472	broad.mit.edu	37	chr12	57627456	57627456	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtatcaggtaagccagcAggtgatgggtgagggcctct	16	8	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57627456	T	T	57627456	1	4	146	0	1	0	0	0	0	0	0	0	14399	203	7	5		5	SHMT2	12	57627456	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	1395985	57627456	76224439	386	126826											
MDM2	4193	broad.mit.edu	37	chr12	69230318	69230318	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccccctttacactcactTactctatttgatattgtcta	2	12	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69230318	C	C	69230318	1	2	146	0	1	0	0	0	0	0	0	0	9506	1769	61	5		5	MDM2	12	69230318	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	11602862	69230318	64621577	387	126827											
NAV3	89795	broad.mit.edu	37	chr12	78225279	78225279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcaaaactgaggcagcCagctgttgggtcaaagcctg	12	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78225279	A	A	78225279	3	1	146	1	0	0	0	0	1	0	0	0	10279	594	21	2	40	2	NAV3	12	78225279	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	8994961	78225279	55626616	388	126828											
NAV3	89795	broad.mit.edu	37	chr12	78444684	78444684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaggcgggagatgctccctCcctgggtgctggctatcctc	13	14	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78444684	A	A	78444684	3	1	146	1	0	0	0	0	1	0	0	0	10279	855	30	3	2315	3	NAV3	12	78444684	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	219405	78444684	55407211	389	126829											
SYT1	6857	broad.mit.edu	37	chr12	79747420	79747420	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaagcctgcagtgtttattGatttttttcaaatgctgttt	8	5	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79747420	T	T	79747420	1	4	146	0	1	0	0	0	0	0	0	0	15584	1305	45	3		3	SYT1	12	79747420	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1302736	79747420	54104475	390	126830											
EPYC	1833	broad.mit.edu	37	chr12	91372012	91372013	+	Missense_Mutation	DNP	CT	AA	AA													agtgaggagctctctgttccCtgaaggcatcactgtggcta							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	91372013	AA	AA	91372012	3	1	146	1	0	0	0	0	1	0	0	0	5243	681	24	2	795	2	EPYC	12	91372012	Missense_Mutation	DNP	CT	TCGA-49-6744-01A-11D-1855-08	11624592	91372012	42479883	391	126831											
ANO4	121601	broad.mit.edu	37	chr12	101510519	101510519	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatttctgactttgagaaccGatctgagcctgaatctgatg	9	8	3	5			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101510519	A	A	101510519	3	1	146	1	0	0	0	0	1	0	0	0	699	1058	37	4	2498	4	ANO4	12	101510519	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	10138507	101510519	32341376	392	126832											
STAB2	55576	broad.mit.edu	37	chr12	104063304	104063304	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggttcaaaggggaacacgCattttgtttttcagattcca	11	7	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104063304	T	T	104063304	1	4	146	0	1	0	0	0	0	0	0	0	15356	725	25	4		4	STAB2	12	104063304	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	2552785	104063304	29788591	393	126833											
CMKLR1	1240	broad.mit.edu	37	chr12	108686090	108686090	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtgacagtcaccaccatgTgccggctataccccacaggg	12	14	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108686090	A	A	108686090	3	1	146	1	0	0	0	0	1	0	0	0	3611	1696	59	5	475	5	CMKLR1	12	108686090	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	4622786	108686090	25165805	394	126834											
MYO1H	283446	broad.mit.edu	37	chr12	109877531	109877531	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattacatcttgaatctccGgtatcaccttccaaagactg	6	11	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109877531	A	A	109877531	1	1	146	0	1	0	0	0	0	0	0	0	10169	1116	39	4		4	MYO1H	12	109877531	5'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08	1191441	109877531	23974364	395	126835											
TRPV4	59341	broad.mit.edu	37	chr12	110226535	110226535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagggctgtgggaggataGgggtggcactcactgagtgt	18	7	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110226535	T	T	110226535	1	4	146	0	1	0	0	0	0	0	0	0	16723	1015	35	2		2	TRPV4	12	110226535	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	349004	110226535	23625360	396	126836											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123651078	123651078	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttcaaagtaaaataaaaGtcaggttctcaaaattaaga	5	6	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123651078	A	A	123651078	1	1	146	0	1	0	0	0	0	0	0	0	9822	1044	36	4		4	MPHOSPH9	12	123651078	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	13424543	123651078	10200817	397	126837											
PIWIL1	9271	broad.mit.edu	37	chr12	130830955	130830955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggttaagcactaaccatttCcggctgacatcccgtcccca	7	15	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130830955	A	A	130830955	3	1	146	1	0	0	0	0	1	0	0	0	12052	854	30	3	371	3	PIWIL1	12	130830955	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	7179877	130830955	3020940	398	126838											
WASF3	10810	broad.mit.edu	37	chr13	27256622	27256622	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatgtttgcatcctgccatGattgaagttcaggtgacaat	10	8	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27256622	T	T	27256622	1	4	146	0	1	0	0	0	0	0	0	0	17381	1305	45	3		3	WASF3	13	27256622	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08		27256622	87913256	399	126839											
C13orf33	84935	broad.mit.edu	37	chr13	31498491	31498491	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaatctgtcacccagatcAtctctgacagagcctctttt	6	13	5	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31498491	T	T	31498491	2	4	146	1	0	0	0	0	0	0	0	1	1740	204	8	5		5	C13orf33	13	31498491	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	4241869	31498491	83671387	400	126840											
DCUN1D2	55208	broad.mit.edu	37	chr13	114138409	114138409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaggaaagccaatgaagcCgctccaggtttgtcccagct	11	11	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114138409	A	A	114138409	1	1	146	0	1	0	0	0	0	0	0	0	4347	667	23	1		1	DCUN1D2	13	114138409	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	82639918	114138409	1031469	401	126841											
OSGEP	55644	broad.mit.edu	37	chr14	20916968	20916968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcaactagcttcttgCctctatgtgggaataagcgt	10	10	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20916968	A	A	20916968	3	1	146	1	0	0	0	0	1	0	0	0	11381	739	26	3	471	3	OSGEP	14	20916968	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08		20916968	86432572	402	126842											
RPGRIP1	57096	broad.mit.edu	37	chr14	21762860	21762860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatatgaaaactcaaccacCcttgagcaggatgaaccggg	10	10	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21762860	T	T	21762860	3	4	146	1	0	0	0	0	1	0	0	0	13660	623	22	4	116	4	RPGRIP1	14	21762860	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	845892	21762860	85586680	403	126843											
CHD8	57680	broad.mit.edu	37	chr14	21873365	21873365	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtatataccaagcattccctCaccattgatgagatatgggt	8	9	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21873365	A	A	21873365	1	1	146	0	1	0	0	0	0	0	0	0	3362	841	29	3		3	CHD8	14	21873365	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	110505	21873365	85476175	404	126844											
EFS	10278	broad.mit.edu	37	chr14	23829551	23829551	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccggtgatcagataatgtCtgagtgcgaggagcttagag	16	6	2	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23829551	A	A	23829551	1	1	146	0	1	0	0	0	0	0	0	0	4999	928	32	3		3	EFS	14	23829551	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1956186	23829551	83519989	405	126845											
RABGGTA	5875	broad.mit.edu	37	chr14	24735687	24735687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtaggttggtgacgccgtCcagggactctatggcattat	15	8	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24735687	A	A	24735687	3	1	146	1	0	0	0	0	1	0	0	0	13075	855	30	3	207	3	RABGGTA	14	24735687	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	906136	24735687	82613853	406	126846											
ADCY4	196883	broad.mit.edu	37	chr14	24788542	24788542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggttgccgtacctgttgtGcatcctgtccagaggtggca	14	10	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24788542	T	T	24788542	3	4	146	1	0	0	0	0	1	0	0	0	296	1319	46	3	415	3	ADCY4	14	24788542	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	52855	24788542	82560998	407	126847											
ADCY4	196883	broad.mit.edu	37	chr14	24793584	24793584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatgctatacgtgatggCcagagctgggggcctgaagg	18	7	0	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24793584	A	A	24793584	3	1	146	1	0	0	0	0	1	0	0	0	296	739	26	3	1440	3	ADCY4	14	24793584	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	5042	24793584	82555956	408	126848											
SLC35F4	341880	broad.mit.edu	37	chr14	58048020	58048020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagagcggagacatccGtggccgtcagcttctttaaa	11	10	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58048020	T	T	58048020	3	4	146	1	0	0	0	0	1	0	0	0	14705	1145	40	3	758	3	SLC35F4	14	58048020	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	33254436	58048020	49301520	409	126849											
ADAM20	8748	broad.mit.edu	37	chr14	70991265	70991265	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatgtggacaatgtatctCtgtcccccaaaccgcaggct	8	14	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70991265	A	A	70991265	3	1	146	1	0	0	0	0	1	0	0	0	242	912	32	3	1974	3	ADAM20	14	70991265	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	12943245	70991265	36358275	410	126850											
SEL1L	6400	broad.mit.edu	37	chr14	81954033	81954033	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctaacacactgatacagaTtaatataatttacaatgaaa	4	6	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81954033	C	C	81954033	1	2	146	0	1	0	0	0	0	0	0	0	14123	1508	52	5		5	SEL1L	14	81954033	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	10962768	81954033	25395507	411	126851											
SPATA7	55812	broad.mit.edu	37	chr14	88883275	88883275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgtttactatagtttaGggtcagcaaatttttcctgt	7	6	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88883275	T	T	88883275	1	4	146	0	1	0	0	0	0	0	0	0	15130	1015	35	2		2	SPATA7	14	88883275	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	6929242	88883275	18466265	412	126852											
OCA2	4948	broad.mit.edu	37	chr15	28326847	28326847	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgcaggagcccaagagctCtgcccggcagcccccctggg	13	18	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28326847	A	A	28326847	3	1	146	1	0	0	0	0	1	0	0	0	10910	912	32	3	2434	3	OCA2	15	28326847	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08		28326847	74204545	413	126853											
HERC2	8924	broad.mit.edu	37	chr15	28375288	28375288	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcacaggcctcagtcctgCggcactgagcccctacctac	8	17	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28375288	A	A	28375288	1	1	146	0	1	0	0	0	0	0	0	0	7125	783	27	3		3	HERC2	15	28375288	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	48441	28375288	74156104	414	126854											
TRPM1	4308	broad.mit.edu	37	chr15	31340193	31340193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtttttcttggccaggcgCggtggctcacgcctgtagtc	13	11	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31340193	T	T	31340193	1	4	146	0	1	0	0	0	0	0	0	0	16710	783	27	4		4	TRPM1	15	31340193	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	2964905	31340193	71191199	415	126855											
OTUD7A	161725	broad.mit.edu	37	chr15	32060398	32060398	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgggaggcacaacccgacTctccacaggtctgtcagcgt	11	16	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32060398	C	C	32060398	1	2	146	0	1	0	0	0	0	0	0	0	11412	1566	54	5		5	OTUD7A	15	32060398	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	720205	32060398	70470994	416	126856											
TP53BP1	7158	broad.mit.edu	37	chr15	43748729	43748729	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtcagagaaaggtgcaacgGaacactctccatattttctt	8	9	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43748729	A	A	43748729	3	1	146	1	0	0	0	0	1	0	0	0	16507	1174	41	4	3924	4	TP53BP1	15	43748729	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	11688331	43748729	58782663	417	126857											
SLC24A5	283652	broad.mit.edu	37	chr15	48414087	48414087	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgtgttatttctccatcatCggagtttcccgaagggtttt	9	8	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48414087	A	A	48414087	4	1	146	1	0	0	0	0	0	1	0	0	14583	893	31	3	161	3	SLC24A5	15	48414087	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4665358	48414087	54117305	418	126858											
HDC	3067	broad.mit.edu	37	chr15	50534354	50534354	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaattatgaactcgccccaaGaaaaatgcatgtacacataa	5	9	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50534354	A	A	50534354	1	1	146	0	1	0	0	0	0	0	0	0	7082	957	33	4		4	HDC	15	50534354	3'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08	2120267	50534354	51997038	419	126859											
VPS13C	54832	broad.mit.edu	37	chr15	62302683	62302683	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcatacctgaggtttggtCagttcaatggcaatattttg	9	6	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62302683	A	A	62302683	2	1	146	1	0	0	0	0	0	0	0	1	17318	813	29	3		3	VPS13C	15	62302683	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	11768329	62302683	40228709	420	126860											
LCTL	197021	broad.mit.edu	37	chr15	66857164	66857164	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaggcagaactgcccacGccccaggagaagcctgcagg	14	13	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66857164	T	T	66857164	2	4	146	1	0	0	0	0	0	0	0	1	8766	1074	38	3		3	LCTL	15	66857164	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	4554481	66857164	35674228	421	126861											
ADAMTS7	11173	broad.mit.edu	37	chr15	79080756	79080756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggcgggtgagccggcGggaggctgccagcctgccct	19	14	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79080756	T	T	79080756	1	4	146	0	1	0	0	0	0	0	0	0	271	1131	39	1		1	ADAMTS7	15	79080756	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	12223592	79080756	23450636	422	126862											
CPEB1	64506	broad.mit.edu	37	chr15	83215282	83215282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctgaacctgcacaaagGcaaaataagatgatgaagtg	9	7	1	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83215282	T	T	83215282	1	4	146	0	1	0	0	0	0	0	0	0	3832	1218	42	3		3	CPEB1	15	83215282	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	4134526	83215282	19316110	423	126863											
AKAP13	11214	broad.mit.edu	37	chr15	86076960	86076960	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagcaaccagtgctggaaaTcagcaggctttgaactttac	9	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86076960	G	G	86076960	3	3	146	1	0	0	0	0	1	0	0	0	449	1432	50	5	337	5	AKAP13	15	86076960	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	2861678	86076960	16454432	424	126864											
AGBL1	123624	broad.mit.edu	37	chr15	86702071	86702071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatcttgtttatcaagttGccccttaaagatttaaagga	7	7	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86702071	T	T	86702071	1	4	146	0	1	0	0	0	0	0	0	0	375	1334	46	3		3	AGBL1	15	86702071	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	625111	86702071	15829321	425	126865											
MEFV	4210	broad.mit.edu	37	chr16	3299593	3299593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggggctgggggcttagGcttcccgggctcttcctttc	16	12	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3299593	T	T	3299593	3	4	146	1	0	0	0	0	1	0	0	0	9552	1194	42	3	1279	3	MEFV	16	3299593	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08		3299593	87055160	426	126866											
PPL	5493	broad.mit.edu	37	chr16	4934298	4934298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctctcgcgcctgctgcGggtcctgctgcagcaccacc	11	18	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4934298	T	T	4934298	3	4	146	1	0	0	0	0	1	0	0	0	12435	1116	39	1	916	1	PPL	16	4934298	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1634705	4934298	85420455	427	126867											
A2BP1	54715	broad.mit.edu	37	chr16	7760688	7760688	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgatgatgtgggtctcgttCtttcttcattgcaggctagt	11	8	4	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7760688	A	A	7760688	3	1	146	1	0	0	0	0	1	0	0	0	3	913	32	3	1380	3	A2BP1	16	7760688	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2826390	7760688	82594065	428	126868											
ITGAM	3684	broad.mit.edu	37	chr16	31283276	31283276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaataacgcagctgcttGggcggacacacacggccacg	12	14	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31283276	T	T	31283276	3	4	146	1	0	0	0	0	1	0	0	0	7957	1348	47	2	693	2	ITGAM	16	31283276	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	23522588	31283276	59071477	429	126869											
ADCY7	113	broad.mit.edu	37	chr16	50346146	50346146	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggcagggaggcggacggTccaggcgcagtccgtagggt	22	9	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50346146	A	A	50346146	1	1	146	0	1	0	0	0	0	0	0	0	299	1682	58	5		5	ADCY7	16	50346146	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	19062870	50346146	40008607	430	126870											
NLRC5	84166	broad.mit.edu	37	chr16	57047554	57047554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccattgtttttgccaatccTccaacttcagccatttgaat	5	12	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57047554	C	C	57047554	1	2	146	0	1	0	0	0	0	0	0	0	10565	1566	54	5		5	NLRC5	16	57047554	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	6701408	57047554	33307199	431	126871											
SLC38A7	55238	broad.mit.edu	37	chr16	58713828	58713828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgggaagttgagtaacCctgcacccaggcacgcgttg	13	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58713828	A	A	58713828	3	1	146	1	0	0	0	0	1	0	0	0	14723	623	22	2	1225	2	SLC38A7	16	58713828	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1666274	58713828	31640925	432	126872											
HSF4	3299	broad.mit.edu	37	chr16	67199351	67199351	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcgcgcgctggagcgcaGgactggccgtgagcgggcac	19	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67199351	A	A	67199351	1	1	146	0	1	0	0	0	0	0	0	0	7465	1015	35	4		4	HSF4	16	67199351	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	8485523	67199351	23155402	433	126873											
FHOD1	29109	broad.mit.edu	37	chr16	67265143	67265143	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatagaggtcagaggactcaGgccgggtctggagcactagg	16	8	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67265143	C	C	67265143	3	2	146	1	0	0	0	0	1	0	0	0	5939	1000	35	4	903	4	FHOD1	16	67265143	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	65792	67265143	23089610	434	126874											
LRRC36	55282	broad.mit.edu	37	chr16	67401002	67401002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaccaagtatcttttttGgacaataagtcttcaggttc	9	7	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67401002	T	T	67401002	3	4	146	1	0	0	0	0	1	0	0	0	9077	1339	47	2	895	2	LRRC36	16	67401002	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	135859	67401002	22953751	435	126875											
SLC7A6	9057	broad.mit.edu	37	chr16	68308953	68308953	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaccaccatcaccaagtcGggagccagctacgcttatat	10	13	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68308953	T	T	68308953	2	4	146	1	0	0	0	0	0	0	0	1	14815	1103	39	1		1	SLC7A6	16	68308953	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	907951	68308953	22045800	436	126876											
SNTB2	6645	broad.mit.edu	37	chr16	69279517	69279517	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttcatagtcaagttcatccGagaagtaacaccatatatca	6	9	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69279517	A	A	69279517	3	1	146	1	0	0	0	0	1	0	0	0	14987	1058	37	4	599	4	SNTB2	16	69279517	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	970564	69279517	21075236	437	126877											
MAF	4094	broad.mit.edu	37	chr16	79633711	79633711	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggttcctttttcacttcaAacttcatcagatcgaagtca	5	12	5	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79633711	T	T	79633711	3	4	146	1	0	0	0	0	1	0	0	0	9243	14	1	5	1134	5	MAF	16	79633711	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	10354194	79633711	10721042	438	126878											
SPATA22	84690	broad.mit.edu	37	chr17	3352250	3352250	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaatgtgtttgtctgaGtagctcggtttctttgttgc	12	5	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3352250	A	A	3352250	3	1	146	1	0	0	0	0	1	0	0	0	15124	1029	36	4	584	4	SPATA22	17	3352250	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08		3352250	77842960	439	126879											
ARRB2	409	broad.mit.edu	37	chr17	4624420	4624420	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaatgggggattgtccCagcccctcttcccttcccct	8	17	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4624420	T	T	4624420	1	4	146	0	1	0	0	0	0	0	0	0	985	609	21	4		4	ARRB2	17	4624420	3'UTR	SNP	C	TCGA-49-6744-01A-11D-1855-08	1272170	4624420	76570790	440	126880											
SLC13A5	284111	broad.mit.edu	37	chr17	6594199	6594199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatcaaggtgatggctgCcgggggcactgcgtgcaagg	17	9	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6594199	A	A	6594199	3	1	146	1	0	0	0	0	1	0	0	0	14508	739	26	3	382	3	SLC13A5	17	6594199	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1969779	6594199	74601011	441	126881											
MYH8	4626	broad.mit.edu	37	chr17	10315587	10315587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaggtgcagtgttggagCaagtaatatggacgctataa	12	5	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10315587	A	A	10315587	1	1	146	0	1	0	0	0	0	0	0	0	10135	725	25	3		3	MYH8	17	10315587	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	3721388	10315587	70879623	442	126882											
MYH1	4619	broad.mit.edu	37	chr17	10419891	10419891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttctgggcttcaattcgCtccctttcagactttcggag	9	11	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10419891	A	A	10419891	3	1	146	1	0	0	0	0	1	0	0	0	10123	796	28	3	5902	3	MYH1	17	10419891	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	104304	10419891	70775319	443	126883											
DNAH9	1770	broad.mit.edu	37	chr17	11513658	11513658	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacacccagggttattttcaCgcctcagggtttttgttttt	8	9	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11513658	T	T	11513658	1	4	146	0	1	0	0	0	0	0	0	0	4648	551	19	4		4	DNAH9	17	11513658	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1093767	11513658	69681552	444	126884											
MAP2K3	5606	broad.mit.edu	37	chr17	21215389	21215389	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggagcccccaaccctcGctcctgggtgcagagcgtgg	16	14	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21215389	A	A	21215389	1	1	146	0	1	0	0	0	0	0	0	0	9330	1102	38	4		4	MAP2K3	17	21215389	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	9701731	21215389	59979821	445	126885											
MAP2K3	5606	broad.mit.edu	37	chr17	21215469	21215469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagattgagatggccatcCtgcggttcccttacgagtcc	11	12	0	2	rs71371053		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21215469	A	A	21215469	3	1	146	1	0	0	0	0	1	0	0	0	9330	680	24	2	828	2	MAP2K3	17	21215469	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	80	21215469	59979741	446	126886											
KCNJ12	3768	broad.mit.edu	37	chr17	21319630	21319630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagatcctgtggggtcacCgctttgagcccgtgctcttc	12	12	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21319630	A	A	21319630	3	1	146	1	0	0	0	0	1	0	0	0	8116	652	23	1	978	1	KCNJ12	17	21319630	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	104161	21319630	59875580	447	126887											
GOSR1	9527	broad.mit.edu	37	chr17	28811835	28811835	+	Intron	DEL	T	-	-													cattatcacaggagtttgggTttttttttttttaatccctg					rs75515486		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28811835	-	-	28811835	6	5	146	0	1	1	0	1	0	0	0	0	6641	1740	60	0		0	GOSR1	17	28811835	Intron	DEL	T	TCGA-49-6744-01A-11D-1855-08	7492205	28811835	52383375	448	126888											
CCT6B	10693	broad.mit.edu	37	chr17	33259426	33259426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcagcaaaagcttggactCcaagacgagctcttcctttt	7	12	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33259426	A	A	33259426	3	1	146	1	0	0	0	0	1	0	0	0	2988	855	30	3	301	3	CCT6B	17	33259426	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4447591	33259426	47935784	449	126889											
GGNBP2	79893	broad.mit.edu	37	chr17	34937774	34937774	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaccttatttttataatagAtgaccgtggaaaaagtacag	7	6	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34937774	T	T	34937774	3	4	146	1	0	0	0	0	1	0	0	0	6423	347	12	5	1051	5	GGNBP2	17	34937774	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	1678348	34937774	46257436	450	126890											
TADA2A	6871	broad.mit.edu	37	chr17	35831204	35831204	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcgttgtagtgattcCggcctgagtccttccattcc	8	13	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35831204	A	A	35831204	2	1	146	1	0	0	0	0	0	0	0	1	15629	639	23	1		1	TADA2A	17	35831204	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	893430	35831204	45364006	451	126891											
MRPL45	84311	broad.mit.edu	37	chr17	36455435	36455435	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatggcatcacaagtgtcGtaggtgtctgagacaattgg	12	7	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36455435	T	T	36455435	5	4	146	1	0	0	0	0	0	0	1	0	9903	1159	40	3	303	3	MRPL45	17	36455435	Splice_Site	SNP	G	TCGA-49-6744-01A-11D-1855-08	624231	36455435	44739775	452	126892											
TOP2A	7153	broad.mit.edu	37	chr17	38567726	38567726	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctaataaggaaaaataccAaactgtaaaactcagtatcc	4	10	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38567726	G	G	38567726	1	3	146	0	1	0	0	0	0	0	0	0	16489	145	5	5		5	TOP2A	17	38567726	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	2112291	38567726	42627484	453	126893											
KRT40	125115	broad.mit.edu	37	chr17	39138576	39138576	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacctcttcatggtttttctTaaggcaaaggagatcttcct	7	9	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39138576	A	A	39138576	4	1	146	1	0	0	0	0	0	1	0	0	8549	1763	61	5	645	5	KRT40	17	39138576	Nonsense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	570850	39138576	42056634	454	126894											
CCDC56	28958	broad.mit.edu	37	chr17	40948087	40948087	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggaggagtgagaggagaaCctgggagagcaaggtgtgtg	20	3	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40948087	T	T	40948087	2	4	146	1	0	0	0	0	0	0	0	1	2854	522	18	4		4	CCDC56	17	40948087	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	1809511	40948087	40247123	455	126895											
PRR11	55771	broad.mit.edu	37	chr17	57257221	57257221	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaagggacccacacaggggGctgggatctaccccaggggc	15	13	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57257221	C	C	57257221	1	2	146	0	1	0	0	0	0	0	0	0	12689	1218	42	4		4	PRR11	17	57257221	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	16309134	57257221	23937989	456	126896											
APPBP2	10513	broad.mit.edu	37	chr17	58541402	58541402	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagaagcttgtcttaagaCatccaccacaactttcactg	5	12	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58541402	T	T	58541402	3	4	146	1	0	0	0	0	1	0	0	0	818	478	17	4	1047	4	APPBP2	17	58541402	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1284181	58541402	22653808	457	126897											
MED13	9969	broad.mit.edu	37	chr17	60107282	60107283	+	Frame_Shift_Del	DEL	GT	-	-													atgatttgctaattttctggGtattttcccaccatggtggc							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60107283	-	-	60107282	7	5	146	1	0	1	0	1	0	0	0	0	9523	1261	44	0	5518	0	MED13	17	60107282	Frame_Shift_Del	DEL	GT	TCGA-49-6744-01A-11D-1855-08	1565880	60107282	21087928	458	126898											
FTSJ3	117246	broad.mit.edu	37	chr17	61897566	61897566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaggtgacctcttcccCatccccccacccccacccca	4	24	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61897566	A	A	61897566	1	1	146	0	1	0	0	0	0	0	0	0	6149	609	21	2		2	FTSJ3	17	61897566	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1790284	61897566	19297644	459	126899											
PRKCA	5578	broad.mit.edu	37	chr17	64795522	64795522	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggtggtggtggtggtgaTggtggtggtggtggtggtga	25	0	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64795522	C	C	64795522	1	2	146	0	1	0	0	0	0	0	0	0	12613	1479	51	5		5	PRKCA	17	64795522	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	2897956	64795522	16399688	460	126900											
KIF19	124602	broad.mit.edu	37	chr17	72338032	72338032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatggtggttctcatggaCccaatggaggatcccgacga	13	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72338032	A	A	72338032	3	1	146	1	0	0	0	0	1	0	0	0	8352	506	18	3	148	3	KIF19	17	72338032	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	7542510	72338032	8857178	461	126901											
C17orf70	80233	broad.mit.edu	37	chr17	79517597	79517597	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccaccaggcagtcacagTgcacatcctcgtcaggcaga	11	14	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79517597	C	C	79517597	3	2	146	1	0	0	0	0	1	0	0	0	1893	1696	59	5	1750	5	C17orf70	17	79517597	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	7179565	79517597	1677613	462	126902											
KIAA0802	23255	broad.mit.edu	37	chr18	8825177	8825177	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagagccagagggagcccGggagacaccaagggaggccc	17	12	0	3	rs149764588		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8825177	T	T	8825177	2	4	146	1	0	0	0	0	0	0	0	1	8264	1103	39	1		1	KIAA0802	18	8825177	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08		8825177	69252071	463	126903											
AFG3L2	10939	broad.mit.edu	37	chr18	12353157	12353157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggcaaataagtctcggaCcttggcaaaaacagaaagag	11	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12353157	A	A	12353157	3	1	146	1	0	0	0	0	1	0	0	0	360	521	18	3	1260	3	AFG3L2	18	12353157	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3527980	12353157	65724091	464	126904											
ZNF521	25925	broad.mit.edu	37	chr18	22804600	22804600	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactgagattcacgcagccGgcacacagaccatatggcag	10	12	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22804600	T	T	22804600	2	4	146	1	0	0	0	0	0	0	0	1	18092	1103	39	1		1	ZNF521	18	22804600	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	10451443	22804600	55272648	465	126905											
DSG4	147409	broad.mit.edu	37	chr18	28980905	28980905	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcaagaactggtgagataCaattttctagagaatttgat	8	4	2	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28980905	G	G	28980905	3	3	146	1	0	0	0	0	1	0	0	0	4819	479	17	4	1377	4	DSG4	18	28980905	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6176305	28980905	49096343	466	126906											
SETBP1	26040	broad.mit.edu	37	chr18	42532822	42532822	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccatgacaacctgagtggtCtttttgcaggcaaagccaca	9	12	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42532822	G	G	42532822	3	3	146	1	0	0	0	0	1	0	0	0	14242	913	32	4	3720	4	SETBP1	18	42532822	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	13551917	42532822	35544426	467	126907											
SLC14A2	8170	broad.mit.edu	37	chr18	43262466	43262466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatcataacaaagtatcaGgcctacgatgtctcctaagt	6	10	4	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43262466	T	T	43262466	3	4	146	1	0	0	0	0	1	0	0	0	14510	991	35	2	2819	2	SLC14A2	18	43262466	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	729644	43262466	34814782	468	126908											
MYO5B	4645	broad.mit.edu	37	chr18	47421485	47421485	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcagccgctctacctcCatggtgtatgttgaggtggt	11	10	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47421485	G	G	47421485	3	3	146	1	0	0	0	0	1	0	0	0	10173	594	21	4	2751	4	MYO5B	18	47421485	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	4159019	47421485	30655763	469	126909											
TCF4	6925	broad.mit.edu	37	chr18	52928796	52928796	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggcagaatatgaaaaccAggcagtgagacgtctaacaa	10	7	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52928796	T	T	52928796	1	4	146	0	1	0	0	0	0	0	0	0	15817	203	7	5		5	TCF4	18	52928796	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	5507311	52928796	25148452	470	126910											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60027181	60027181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgaaccaccttttccCccacagctgtaccttccttg	5	17	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60027181	A	A	60027181	1	1	146	0	1	0	0	0	0	0	0	0	16407	638	22	2		2	TNFRSF11A	18	60027181	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	7098385	60027181	18050067	471	126911											
SERPINB10	5273	broad.mit.edu	37	chr18	61600170	61600170	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttattcagcatttagcagaGaatcagcagtttcaccaact	6	9	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61600170	T	T	61600170	1	4	146	0	1	0	0	0	0	0	0	0	14210	957	33	3		3	SERPINB10	18	61600170	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1572989	61600170	16477078	472	126912											
CDH7	1005	broad.mit.edu	37	chr18	63492008	63492008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggatggtgatggtttgGgcatttttaagatttctgtt	13	2	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63492008	T	T	63492008	3	4	146	1	0	0	0	0	1	0	0	0	3145	1232	43	2	940	2	CDH7	18	63492008	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1891838	63492008	14585240	473	126913											
NETO1	81832	broad.mit.edu	37	chr18	70417390	70417390	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcatctgcagcatcttgcGagtagctgtgtttcatgaca	11	9	3	1	rs139202022	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70417390	T	T	70417390	4	4	146	1	0	0	0	0	0	1	0	0	10434	1059	37	3	161	3	NETO1	18	70417390	Nonsense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	6925382	70417390	7659858	474	126914											
NETO1	81832	broad.mit.edu	37	chr18	70531928	70531928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactcaagagatatttttgCgcatgatctccagatcaatt	6	9	4	3	rs148966704	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70531928	A	A	70531928	1	1	146	0	1	0	0	0	0	0	0	0	10434	783	27	3		3	NETO1	18	70531928	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	114538	70531928	7545320	475	126915											
CNDP2	55748	broad.mit.edu	37	chr18	72183648	72183648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtggggctgggacacgGggtgggggccaagagctact	20	8	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72183648	T	T	72183648	1	4	146	0	1	0	0	0	0	0	0	0	3626	1247	43	2		2	CNDP2	18	72183648	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1651720	72183648	5893600	476	126916											
SHC2	25759	broad.mit.edu	37	chr19	425039	425039	+	Intron	DEL	C	-	-													gtgggggtggggttgtgcctCccccatcagacaacacggcc							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	425039	-	-	425039	6	5	146	0	1	1	0	1	0	0	0	0	14384	870	30	0		0	SHC2	19	425039	Intron	DEL	C	TCGA-49-6744-01A-11D-1855-08		425039	58703944	477	126917											
SHC2	25759	broad.mit.edu	37	chr19	425152	425152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcgggggcgtccagaccCtgggtgttgacatacaggtg	17	10	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	425152	A	A	425152	3	1	146	1	0	0	0	0	1	0	0	0	14384	680	24	2	506	2	SHC2	19	425152	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	113	425152	58703831	478	126918											
SLC25A41	284427	broad.mit.edu	37	chr19	6427222	6427222	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccaggccactggggtcccCcatatccctgcctgacttca	9	17	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6427222	T	T	6427222	3	4	146	1	0	0	0	0	1	0	0	0	14620	623	22	4	288	4	SLC25A41	19	6427222	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	6002070	6427222	52701761	479	126919											
MUC16	94025	broad.mit.edu	37	chr19	9066578	9066578	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggcattttgggaaatgctGgtctctctcagtccaggagt	12	9	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9066578	C	C	9066578	2	2	146	1	0	0	0	0	0	0	0	1	10067	1335	47	4		4	MUC16	19	9066578	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	2639356	9066578	50062405	480	126920											
ZNF317	57693	broad.mit.edu	37	chr19	9270789	9270789	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttacgtcttaaccaacaGgaaagagccggtcttggaga	10	10	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9270789	A	A	9270789	5	1	146	1	0	0	0	0	0	0	1	0	17961	1014	35	4	490	4	ZNF317	19	9270789	Splice_Site	SNP	G	TCGA-49-6744-01A-11D-1855-08	204211	9270789	49858194	481	126921											
ZNF846	162993	broad.mit.edu	37	chr19	9872753	9872753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataccacatctgcttatgaaCtcaccctgcagaactcctgt	5	14	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9872753	A	A	9872753	1	1	146	0	1	0	0	0	0	0	0	0	18321	580	20	3		3	ZNF846	19	9872753	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	601964	9872753	49256230	482	126922											
IL27RA	9466	broad.mit.edu	37	chr19	14157462	14157462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacctgggtctccatccCcgctgttagagcagacggat	12	13	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14157462	A	A	14157462	1	1	146	0	1	0	0	0	0	0	0	0	7751	638	22	2		2	IL27RA	19	14157462	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	4284709	14157462	44971521	483	126923											
JAK3	3718	broad.mit.edu	37	chr19	17942109	17942109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcagcagcttagctaggCcgaagtcagcgatcttgacg	14	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17942109	A	A	17942109	3	1	146	1	0	0	0	0	1	0	0	0	8009	739	26	3	484	3	JAK3	19	17942109	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3784647	17942109	41186874	484	126924											
ZNF536	9745	broad.mit.edu	37	chr19	30936068	30936068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccaggggcatggccatGgaacatggcttcttgtctaa	13	9	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30936068	T	T	30936068	3	4	146	1	0	0	0	0	1	0	0	0	18101	1348	47	2	1601	2	ZNF536	19	30936068	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	12993959	30936068	28192915	485	126925											
TMEM149	79713	broad.mit.edu	37	chr19	36236379	36236379	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtagttcgttgccctctccAggcgcttaccaagcgctcgg	11	14	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36236379	T	T	36236379	1	4	146	0	1	0	0	0	0	0	0	0	16185	203	7	5		5	TMEM149	19	36236379	5'Flank	SNP	A	TCGA-49-6744-01A-11D-1855-08	5300311	36236379	22892604	486	126926											
NPHS1	4868	broad.mit.edu	37	chr19	36342118	36342118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggttgcggggtaggggagGgcttgaagcccagactcatg	19	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36342118	T	T	36342118	1	4	146	0	1	0	0	0	0	0	0	0	10677	1247	43	2		2	NPHS1	19	36342118	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	105739	36342118	22786865	487	126927											
WDR62	284403	broad.mit.edu	37	chr19	36580003	36580003	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctactttcgcagtgcccAgcaggtagggtggcatggcc	13	12	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36580003	T	T	36580003	3	4	146	1	0	0	0	0	1	0	0	0	17440	188	7	5	1886	5	WDR62	19	36580003	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	237885	36580003	22548980	488	126928											
ZNF260	339324	broad.mit.edu	37	chr19	37005826	37005826	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcataaggtttctctccagtGtgatgtttctgatgagaaag	10	6	3	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37005826	A	A	37005826	2	1	146	1	0	0	0	0	0	0	0	1	17928	1368	48	4		4	ZNF260	19	37005826	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	425823	37005826	22123157	489	126929											
ATP1A3	478	broad.mit.edu	37	chr19	42492394	42492394	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccagccacagcccctcctCcctcagacccaggggtccta	7	21	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42492394	A	A	42492394	1	1	146	0	1	0	0	0	0	0	0	0	1134	870	30	3		3	ATP1A3	19	42492394	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	5486568	42492394	16636589	490	126930											
RELB	5971	broad.mit.edu	37	chr19	45541024	45541024	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctttgggggcggcctcctAtccccggggcctgaagccac	14	16	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45541024	G	G	45541024	2	3	146	1	0	0	0	0	0	0	0	1	13325	436	16	5		5	RELB	19	45541024	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	3048630	45541024	13587959	491	126931											
NAPA	8775	broad.mit.edu	37	chr19	48004056	48004056	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtggggctccacacttTatgaagccacagagacactg	10	12	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48004056	C	C	48004056	1	2	146	0	1	0	0	0	0	0	0	0	10255	1769	61	5		5	NAPA	19	48004056	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	2463032	48004056	11124927	492	126932											
SLC6A16	28968	broad.mit.edu	37	chr19	49813408	49813408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccacattgaagtacaggcCgaggatgaagcacacctggg	13	10	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49813408	A	A	49813408	3	1	146	1	0	0	0	0	1	0	0	0	14793	652	23	1	1657	1	SLC6A16	19	49813408	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1809352	49813408	9315575	493	126933											
NUP62	23636	broad.mit.edu	37	chr19	50413058	50413058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcctccaaaattaaaccCgctcatggctccggactctg	8	14	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50413058	A	A	50413058	3	1	146	1	0	0	0	0	1	0	0	0	10863	652	23	1	1565	1	NUP62	19	50413058	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	599650	50413058	8715925	494	126934											
ZNF836	162962	broad.mit.edu	37	chr19	52658445	52658445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attacatttgtaaggtttgtCcccagtatgcattttctgat	7	7	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52658445	A	A	52658445	3	1	146	1	0	0	0	0	1	0	0	0	18316	855	30	3	321	3	ZNF836	19	52658445	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	2245387	52658445	6470538	495	126935											
ZNF528	84436	broad.mit.edu	37	chr19	52919344	52919344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccttatggatgcagtcaGtgtggcaagatctttagtca	11	7	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52919344	T	T	52919344	3	4	146	1	0	0	0	0	1	0	0	0	18096	1020	36	3	1253	3	ZNF528	19	52919344	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	260899	52919344	6209639	496	126936											
ZNF83	55769	broad.mit.edu	37	chr19	53158725	53158725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatcaaaagcatgtatgCggcaaaatcacaaaagagaa	8	7	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53158725	A	A	53158725	1	1	146	0	1	0	0	0	0	0	0	0	18312	783	27	3		3	ZNF83	19	53158725	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	239381	53158725	5970258	497	126937											
ZNF813	126017	broad.mit.edu	37	chr19	53986964	53986964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttacagggaggggatgtGttgattctgagcaataaaca	14	4	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53986964	T	T	53986964	1	4	146	0	1	0	0	0	0	0	0	0	18304	1392	48	3		3	ZNF813	19	53986964	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	828239	53986964	5142019	498	126938											
LILRA2	11027	broad.mit.edu	37	chr19	55087673	55087673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaatgaggggagtgaaGcgggagggtccacaggggag	20	4	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55087673	T	T	55087673	1	4	146	0	1	0	0	0	0	0	0	0	8857	986	34	3		3	LILRA2	19	55087673	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1100709	55087673	4041310	499	126939											
LILRA2	11027	broad.mit.edu	37	chr19	55098623	55098623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggacatacaggagtcccGgggtgattccgatctgccct	14	11	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55098623	T	T	55098623	1	4	146	0	1	0	0	0	0	0	0	0	8857	1131	39	1		1	LILRA2	19	55098623	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	10950	55098623	4030360	500	126940											
KIR2DL3	3804	broad.mit.edu	37	chr19	55271926	55271926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcccagccgggccccaCggttctggcaggagagagcg	15	15	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55271926	A	A	55271926	1	1	146	0	1	0	0	0	0	0	0	0	8388	551	19	3		3	KIR2DL3	19	55271926	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	173303	55271926	3857057	501	126941											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272202	55272202	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagcccatggctgtcccAtgtcctatgatcctagagcc	10	13	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55272202	T	T	55272202	1	4	146	0	1	0	0	0	0	0	0	0	8388	232	8	5		5	KIR2DL3	19	55272202	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	276	55272202	3856781	502	126942											
KIR3DL1	3811	broad.mit.edu	37	chr19	55344303	55344303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtggggatggagatctgGgcccagaggtggagatatgg	20	5	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55344303	T	T	55344303	1	4	146	0	1	0	0	0	0	0	0	0	8391	1247	43	2		2	KIR3DL1	19	55344303	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	72101	55344303	3784680	503	126943											
FCAR	2204	broad.mit.edu	37	chr19	55385779	55385779	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccaccctcctgtgtcttGgtgagtttcagagtaaaagt	10	9	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55385779	A	A	55385779	3	1	146	1	0	0	0	0	1	0	0	0	5830	1362	47	4	36	4	FCAR	19	55385779	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	41476	55385779	3743204	504	126944											
NLRP13	126204	broad.mit.edu	37	chr19	56443652	56443652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggttggtaccaccgttgGggcaggtgattacagaaaag	14	7	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56443652	T	T	56443652	3	4	146	1	0	0	0	0	1	0	0	0	10570	1232	43	2	3147	2	NLRP13	19	56443652	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1057873	56443652	2685331	505	126945											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701419	56701419	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccctgtaaggtggactcgTgggcgaaccgcttttggcag	16	10	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701419	A	A	56701419	3	1	146	1	0	0	0	0	1	0	0	0	18368	1696	59	5	226	5	ZSCAN5B	19	56701419	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	257767	56701419	2427564	506	126946											
ZNF304	57343	broad.mit.edu	37	chr19	57863000	57863000	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgtggggtttcggctgaGcccacagggcacagactgtt	16	10	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57863000	T	T	57863000	1	4	146	0	1	0	0	0	0	0	0	0	17959	986	34	3		3	ZNF304	19	57863000	5'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08	1161581	57863000	1265983	507	126947											
ZNF548	147694	broad.mit.edu	37	chr19	57908328	57908328	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttggccctgtgtttaatggGtggtaaatataagtagaaaa	11	3	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57908328	C	C	57908328	1	2	146	0	1	0	0	0	0	0	0	0	18107	1276	44	4		4	ZNF548	19	57908328	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	45328	57908328	1220655	508	126948											
ZNF772	400720	broad.mit.edu	37	chr19	57985662	57985662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtcttttaagaccagGccacatgtcccacaggggta	9	10	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57985662	T	T	57985662	2	4	146	1	0	0	0	0	0	0	0	1	18274	1190	42	3		3	ZNF772	19	57985662	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	77334	57985662	1143321	509	126949											
ZNF549	256051	broad.mit.edu	37	chr19	58067432	58067432	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgagggtttgtgttaaaagGacattttctaccccgacaat	10	7	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58067432	A	A	58067432	1	1	146	0	1	0	0	0	0	0	0	0	18108	1189	41	4		4	ZNF549	19	58067432	3'UTR	SNP	G	TCGA-49-6744-01A-11D-1855-08	81770	58067432	1061551	510	126950											
STK35	140901	broad.mit.edu	37	chr20	2097599	2097599	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgctgggctggcacccCgaggcaaagagggcaatcaa	14	11	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2097599	A	A	2097599	2	1	146	1	0	0	0	0	0	0	0	1	15419	644	23	1		1	STK35	20	2097599	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08		2097599	60927921	511	126951											
SNRPB	6628	broad.mit.edu	37	chr20	2446399	2446399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcattgagaccagattctcCcctcgcagcagcaccagacc	8	16	2	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2446399	A	A	2446399	2	1	146	1	0	0	0	0	0	0	0	1	14975	610	22	2		2	SNRPB	20	2446399	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	348800	2446399	60579121	512	126952											
FERMT1	55612	broad.mit.edu	37	chr20	6093086	6093086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctcttgagttttactGtacgttcaaacaacaaaaca	4	9	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6093086	T	T	6093086	1	4	146	0	1	0	0	0	0	0	0	0	5874	1392	48	3		3	FERMT1	20	6093086	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	3646687	6093086	56932434	513	126953											
PLCB1	23236	broad.mit.edu	37	chr20	8717720	8717720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagaaagttgggacttacGtggaagtagatatgtttggt	13	2	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8717720	T	T	8717720	3	4	146	1	0	0	0	0	1	0	0	0	12122	1145	40	3	2167	3	PLCB1	20	8717720	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	2624634	8717720	54307800	514	126954											
C20orf103	24141	broad.mit.edu	37	chr20	9497022	9497022	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtggtgagtggaggctGgcatggctggggagggagcc	22	6	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9497022	A	A	9497022	1	1	146	0	1	0	0	0	0	0	0	0	2097	1363	47	4		4	C20orf103	20	9497022	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	779302	9497022	53528498	515	126955											
CEP250	11190	broad.mit.edu	37	chr20	34091626	34091626	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaactggatgaggcccagaGagccctagcccagagggacc	13	13	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34091626	C	C	34091626	3	2	146	1	0	0	0	0	1	0	0	0	3282	942	33	4	5535	4	CEP250	20	34091626	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	24594604	34091626	28933894	516	126956											
RALGAPB	57148	broad.mit.edu	37	chr20	37177415	37177415	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagctttgtcttttacccAgaggagcaaaagcaaatcag	8	9	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37177415	T	T	37177415	4	4	146	1	0	0	0	0	0	1	0	0	13123	180	7	5	3060	5	RALGAPB	20	37177415	Nonsense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	3085789	37177415	25848105	517	126957											
RALGAPB	57148	broad.mit.edu	37	chr20	37177493	37177493	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttttgtaatttaaaggttaGgtaacattccaacagaagac	8	5	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37177493	C	C	37177493	1	2	146	0	1	0	0	0	0	0	0	0	13123	1015	35	4		4	RALGAPB	20	37177493	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	78	37177493	25848027	518	126958											
JPH2	57158	broad.mit.edu	37	chr20	42806414	42806414	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgttccaaagtcaaaaactCgtttttgtcctcaaatatcc	4	11	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42806414	A	A	42806414	1	1	146	0	1	0	0	0	0	0	0	0	8031	899	31	3		3	JPH2	20	42806414	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	5628921	42806414	20219106	519	126959											
DDX27	55661	broad.mit.edu	37	chr20	47858718	47858718	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgggcccgagcaatgccCgaggaggagccagtgagagg	18	10	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47858718	A	A	47858718	2	1	146	1	0	0	0	0	0	0	0	1	4387	639	23	1		1	DDX27	20	47858718	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	5052304	47858718	15166802	520	126960											
C20orf151	140893	broad.mit.edu	37	chr20	60991178	60991178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctcggggggtgctGgggagttgggtgtctgagcc	22	7	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60991178	T	T	60991178	1	4	146	0	1	0	0	0	0	0	0	0	2113	1363	47	2		2	C20orf151	20	60991178	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	13132460	60991178	2034342	521	126961											
C20orf20	55257	broad.mit.edu	37	chr20	61430905	61430905	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcaaagaaggcgcagaCaagcggaagcgcagccgggt	18	9	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61430905	G	G	61430905	3	3	146	1	0	0	0	0	1	0	0	0	2125	477	17	4	543	4	C20orf20	20	61430905	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	439727	61430905	1594615	522	126962											
DIDO1	11083	broad.mit.edu	37	chr20	61542112	61542112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatttctgtgggtgccCacacatgacccacctgttgt	11	12	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61542112	A	A	61542112	1	1	146	0	1	0	0	0	0	0	0	0	4562	609	21	2		2	DIDO1	20	61542112	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	111207	61542112	1483408	523	126963											
IFNAR2	3455	broad.mit.edu	37	chr21	34635338	34635338	+	Frame_Shift_Del	DEL	G	-	-													ctacagaatcccagttgataGacccggagtccgaggaggag							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34635338	-	-	34635338	7	5	146	1	0	1	0	1	0	0	0	0	7615	942	33	0	1271	0	IFNAR2	21	34635338	Frame_Shift_Del	DEL	G	TCGA-49-6744-01A-11D-1855-08		34635338	13494557	524	126964											
U2AF1	7307	broad.mit.edu	37	chr21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggtttattgtgcaaccgaGagcacctgtctccatgacga	10	11	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44524456	A	A	44524456	3	1	146	1	0	0	0	0	1	0	0	0	16947	942	33	4	720	4	U2AF1	21	44524456	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	9889118	44524456	3605439	525	126965											
KRTAP10-11	386678	broad.mit.edu	37	chr21	46067175	46067175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcctgccagtccagctGctgccgcccggcctcctgcg	10	21	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46067175	T	T	46067175	3	4	146	1	0	0	0	0	1	0	0	0	8578	1319	46	3	802	3	KRTAP10-11	21	46067175	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1542719	46067175	2062720	526	126966											
PCBP3	54039	broad.mit.edu	37	chr21	47359949	47359949	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtccttgtttctagctaatAggctgcataattggacgcca	9	10	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47359949	T	T	47359949	2	4	146	1	0	0	0	0	0	0	0	1	11596	410	15	5		5	PCBP3	21	47359949	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	1292774	47359949	769946	527	126967											
PEX26	55670	broad.mit.edu	37	chr22	18562679	18562679	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctgtgtgttgtggggatCcaggccctggcagaaatgga	15	9	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18562679	A	A	18562679	2	1	146	1	0	0	0	0	0	0	0	1	11841	845	30	3		3	PEX26	22	18562679	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08		18562679	32741887	528	126968											
TBX1	6899	broad.mit.edu	37	chr22	19752613	19752613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagacacgattcaccgcgGtcactgcctaccagaaccat	9	14	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19752613	T	T	19752613	3	4	146	1	0	0	0	0	1	0	0	0	15772	1261	44	3	835	3	TBX1	22	19752613	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1189934	19752613	31551953	529	126969											
NEFH	4744	broad.mit.edu	37	chr22	29885226	29885226	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccggctgaggccaagtccCcagagaaggaggaagcaaaa	13	11	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29885226	G	G	29885226	3	3	146	1	0	0	0	0	1	0	0	0	10409	623	22	4	1611	4	NEFH	22	29885226	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	10132613	29885226	21419340	530	126970											
ASCC2	84164	broad.mit.edu	37	chr22	30186594	30186594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgccacattttcctaagCggcgatgaggccctgctcaa	10	13	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30186594	A	A	30186594	1	1	146	0	1	0	0	0	0	0	0	0	1036	783	27	3		3	ASCC2	22	30186594	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	301368	30186594	21117972	531	126971											
EIF4ENIF1	56478	broad.mit.edu	37	chr22	31836124	31836124	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaactgtggagataagaagGgttatcattcacagcatgag	12	5	2	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31836124	A	A	31836124	1	1	146	0	1	0	0	0	0	0	0	0	5077	1247	43	4		4	EIF4ENIF1	22	31836124	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1649530	31836124	19468442	532	126972											
MYH9	4627	broad.mit.edu	37	chr22	36684363	36684364	+	Nonsense_Mutation	DNP	CC	AA	AA													ggccgagtcgatgtgcgcctCcaggtccttcaggtccatct							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36684364	AA	AA	36684363	4	1	146	1	0	0	0	0	0	1	0	0	10136	864	30	3	1047	3	MYH9	22	36684363	Nonsense_Mutation	DNP	CC	TCGA-49-6744-01A-11D-1855-08	4848239	36684363	14620203	533	126973											
MXRA5	25878	broad.mit.edu	37	chrX	3235811	3235811	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtccctttggccagacactCcattgcaatggtgtctccca	9	14	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3235811	A	A	3235811	4	1	146	1	0	0	0	0	0	1	0	0	10097	864	30	3	2583	3	MXRA5	23	3235811	Nonsense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08		3235811	152034749	534	126974											
STS	412	broad.mit.edu	37	chrX	7175602	7175602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctttgctaagcttctgaagGatcaaggttattcaacagca	8	9	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7175602	T	T	7175602	3	4	146	1	0	0	0	0	1	0	0	0	15450	1174	41	3	384	3	STS	23	7175602	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3939791	7175602	148094958	535	126975											
VCX3B	425054	broad.mit.edu	37	chrX	8433568	8433568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagtcctcctctcagcCgagccccagtgacccgaaga	11	15	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8433568	A	A	8433568	3	1	146	1	0	0	0	0	1	0	0	0	17272	652	23	1	79	1	VCX3B	23	8433568	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1257966	8433568	146836992	536	126976											
FAM9B	171483	broad.mit.edu	37	chrX	9000951	9000951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagaaagcagacagaccGtcctcttgggcgtgcacctt	12	13	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9000951	T	T	9000951	1	4	146	0	1	0	0	0	0	0	0	0	5717	1160	40	3		3	FAM9B	23	9000951	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	567383	9000951	146269609	537	126977											
WWC3	55841	broad.mit.edu	37	chrX	10092351	10092351	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggagacacggccagtaacGgagatccccagatccacgtg	12	13	0	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10092351	C	C	10092351	3	2	146	1	0	0	0	0	1	0	0	0	17540	1117	39	4	1844	4	WWC3	23	10092351	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1091400	10092351	145178209	538	126978											
FRMPD4	9758	broad.mit.edu	37	chrX	12720227	12720227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaattgatcttgtttgtGtcaaagcattcattcgccag	7	9	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12720227	T	T	12720227	1	4	146	0	1	0	0	0	0	0	0	0	6119	1392	48	3		3	FRMPD4	23	12720227	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	2627876	12720227	142550333	539	126979											
PRPS2	5634	broad.mit.edu	37	chrX	12828215	12828215	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattcgggaaaacattgcCgagtggaagaactgtatcat	12	6	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12828215	A	A	12828215	2	1	146	1	0	0	0	0	0	0	0	1	12686	639	23	1		1	PRPS2	23	12828215	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	107988	12828215	142442345	540	126980											
BEND2	139105	broad.mit.edu	37	chrX	18195540	18195540	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaattatatattattaagtTgtaaaatcagggtcagacag	7	5	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18195540	C	C	18195540	1	2	146	0	1	0	0	0	0	0	0	0	1403	1827	63	5		5	BEND2	23	18195540	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	5367325	18195540	137075020	541	126981											
CNKSR2	22866	broad.mit.edu	37	chrX	21627613	21627613	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagcgggttcaaccattgctGtctgaatgctccagttagtg	11	9	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21627613	C	C	21627613	3	2	146	1	0	0	0	0	1	0	0	0	3639	1377	48	4	2648	4	CNKSR2	23	21627613	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	3432073	21627613	133642947	542	126982											
MBTPS2	51360	broad.mit.edu	37	chrX	21886563	21886563	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcccccggttgagcttattGctttttttcctctctttcca	6	13	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21886563	C	C	21886563	1	2	146	0	1	0	0	0	0	0	0	0	9455	1334	46	4		4	MBTPS2	23	21886563	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	258950	21886563	133383997	543	126983											
DCAF8L2	347442	broad.mit.edu	37	chrX	27765783	27765783	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgatagtgtgggactgGgtgcggcagaggccagtact	18	6	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27765783	C	C	27765783	3	2	146	1	0	0	0	0	1	0	0	0	4311	1241	43	4	773	4	DCAF8L2	23	27765783	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	5879220	27765783	127504777	544	126984											
FTHL17	53940	broad.mit.edu	37	chrX	31089982	31089982	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggtacaggtaggaggtgTagagctccagcgtgatgtgg	17	6	0	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31089982	A	A	31089982	3	1	146	1	0	0	0	0	1	0	0	0	6143	1638	57	5	466	5	FTHL17	23	31089982	Missense_Mutation	SNP	T	TCGA-49-6744-01A-11D-1855-08	3324199	31089982	124180578	545	126985											
FAM47A	158724	broad.mit.edu	37	chrX	34148334	34148334	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatcttcacacgctgtgCggtataagaattcgatggcg	10	10	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34148334	A	A	34148334	3	1	146	1	0	0	0	0	1	0	0	0	5620	768	27	3	317	3	FAM47A	23	34148334	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	3058352	34148334	121122226	546	126986											
CXorf59	286464	broad.mit.edu	37	chrX	36162711	36162711	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccaaaggagatggatGcaggagtcagtggcctgaga	15	6	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36162711	C	C	36162711	3	2	146	1	0	0	0	0	1	0	0	0	4148	1319	46	4	1332	4	CXorf59	23	36162711	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	2014377	36162711	119107849	547	126987											
CXorf59	286464	broad.mit.edu	37	chrX	36162841	36162842	+	Frame_Shift_Ins	INS	-	T	T													tttgcttgtttttttgtttgINStttgttcttttttatttttg							TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36162842	T	T	36162841	7	5	146	1	0	1	1	0	0	0	0	0	4148	1377	48	0	1462	0	CXorf59	23	36162841	Frame_Shift_Ins	INS	-	TCGA-49-6744-01A-11D-1855-08	130	36162841	119107719	548	126988											
SYTL5	94122	broad.mit.edu	37	chrX	37969676	37969676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctcggggaagtagagattCcttttgactcatggaacttt	10	8	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37969676	A	A	37969676	3	1	146	1	0	0	0	0	1	0	0	0	15605	855	30	3	1653	3	SYTL5	23	37969676	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1806835	37969676	117300884	549	126989											
BCOR	54880	broad.mit.edu	37	chrX	39922714	39922714	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaccacgggcaaggacaTcaagagagaactccctgcct	10	13	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39922714	G	G	39922714	1	3	146	0	1	0	0	0	0	0	0	0	1391	1450	50	5		5	BCOR	23	39922714	Intron	SNP	T	TCGA-49-6744-01A-11D-1855-08	1953038	39922714	115347846	550	126990											
SSX5	6758	broad.mit.edu	37	chrX	48053613	48053613	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaatcattcccctggaagtCtgcgacccgtttattacgca	7	12	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48053613	A	A	48053613	3	1	146	1	0	0	0	0	1	0	0	0	15326	913	32	3	350	3	SSX5	23	48053613	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	8130899	48053613	107216947	551	126991											
SSX3	10214	broad.mit.edu	37	chrX	48209378	48209378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccacacacctgaacgtcGccagggaagccagtgggatt	12	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48209378	T	T	48209378	1	4	146	0	1	0	0	0	0	0	0	0	15323	1102	38	3		3	SSX3	23	48209378	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	155765	48209378	107061182	552	126992											
PHF8	23133	broad.mit.edu	37	chrX	54019925	54019925	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggactggtagccaaacagcAgggggtctaagggacatggc	17	8	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54019925	G	G	54019925	1	3	146	0	1	0	0	0	0	0	0	0	11935	203	7	5		5	PHF8	23	54019925	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	5810547	54019925	101250635	553	126993											
WNK3	65267	broad.mit.edu	37	chrX	54259271	54259271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgccattgtccacatgtGtcaaggactgggggcggctt	13	10	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54259271	T	T	54259271	3	4	146	1	0	0	0	0	1	0	0	0	17506	1377	48	3	607	3	WNK3	23	54259271	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	239346	54259271	101011289	554	126994											
RGAG4	340526	broad.mit.edu	37	chrX	71349932	71349932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagttttcggcgtggtaacCacttgtggggccagaagtct	14	8	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71349932	A	A	71349932	3	1	146	1	0	0	0	0	1	0	0	0	13383	594	21	2	254	2	RGAG4	23	71349932	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	17090661	71349932	83920628	555	126995											
ATP7A	538	broad.mit.edu	37	chrX	77294263	77294263	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcaaggttagacaggaAgaacttgcttcatggggttt	13	6	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77294263	T	T	77294263	1	4	146	0	1	0	0	0	0	0	0	0	1194	87	3	5		5	ATP7A	23	77294263	Intron	SNP	A	TCGA-49-6744-01A-11D-1855-08	5944331	77294263	77976297	556	126996											
CYLC1	1538	broad.mit.edu	37	chrX	83128659	83128659	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagattcaaagaaagttaagAaaaatgtcaagaaagatgac	8	3	2	6			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83128659	G	G	83128659	3	3	146	1	0	0	0	0	1	0	0	0	4174	247	9	5	957	5	CYLC1	23	83128659	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	5834396	83128659	72141901	557	126997											
HDX	139324	broad.mit.edu	37	chrX	83730391	83730391	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgttctacagtaaatacAgaacgtagattcatctaaaa	6	6	3	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83730391	T	T	83730391	2	4	146	1	0	0	0	0	0	0	0	1	7093	175	7	5		5	HDX	23	83730391	Silent	SNP	A	TCGA-49-6744-01A-11D-1855-08	601732	83730391	71540169	558	126998											
PCDH11X	27328	broad.mit.edu	37	chrX	91237719	91237719	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacgttcttgccatccagaaGagctgacagtgtcagtttga	11	9	2	4			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91237719	C	C	91237719	1	2	146	0	1	0	0	0	0	0	0	0	11602	957	33	4		4	PCDH11X	23	91237719	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	7507328	91237719	64032841	559	126999											
GPRASP1	9737	broad.mit.edu	37	chrX	101910104	101910104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcatggcagatgaagcCagcatagagtccagtctaca	10	11	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101910104	A	A	101910104	2	1	146	1	0	0	0	0	0	0	0	1	6788	581	21	2		2	GPRASP1	23	101910104	Silent	SNP	C	TCGA-49-6744-01A-11D-1855-08	10672385	101910104	53360456	560	127000											
GPRASP1	9737	broad.mit.edu	37	chrX	101911166	101911166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggccagaagctgaggaGggggacattattggttcttg	15	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101911166	T	T	101911166	3	4	146	1	0	0	0	0	1	0	0	0	6788	991	35	2	2327	2	GPRASP1	23	101911166	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	1062	101911166	53359394	561	127001											
H2BFWT	158983	broad.mit.edu	37	chrX	103267690	103267690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgaaaagaccctttggGttcccgtggtgctcgggtgc	14	11	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103267690	T	T	103267690	1	4	146	0	1	0	0	0	0	0	0	0	6998	1276	44	3		3	H2BFWT	23	103267690	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1356524	103267690	52002870	562	127002											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104440287	104440287	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacggcccagagcactggGctcaggcttatgtggtacaa	13	11	1	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104440287	T	T	104440287	2	4	146	1	0	0	0	0	0	0	0	1	7732	1190	42	3		3	IL1RAPL2	23	104440287	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	1172597	104440287	50830273	563	127003											
SERPINA7	6906	broad.mit.edu	37	chrX	105277791	105277791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggaaaggtggggccgCccctttgctatactatgttg	14	8	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105277791	A	A	105277791	1	1	146	0	1	0	0	0	0	0	0	0	14207	754	26	3		3	SERPINA7	23	105277791	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	837504	105277791	49992769	564	127004											
COL4A5	1287	broad.mit.edu	37	chrX	107827715	107827715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaattgcattgaacaggGccaaaaaggtgacactggcc	10	9	0	2	rs104886092		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107827715	T	T	107827715	3	4	146	1	0	0	0	0	1	0	0	0	3726	1217	42	3	1062	3	COL4A5	23	107827715	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	2549924	107827715	47442845	565	127005											
CAPN6	827	broad.mit.edu	37	chrX	110490609	110490609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttacctgtactataataGgaatgtcagtggtccttctg	8	9	3	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110490609	A	A	110490609	3	1	146	1	0	0	0	0	1	0	0	0	2656	1000	35	4	203	4	CAPN6	23	110490609	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	2662894	110490609	44779951	566	127006											
PLS3	5358	broad.mit.edu	37	chrX	114874645	114874645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatccaatgcaaatagcCttccaaacatgggacaatag	6	9	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114874645	A	A	114874645	1	1	146	0	1	0	0	0	0	0	0	0	12203	696	24	2		2	PLS3	23	114874645	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	4384036	114874645	40395915	567	127007											
WDR44	54521	broad.mit.edu	37	chrX	117543510	117543510	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attacttgcctcagctggacAagacaatgtagtgagaatat	9	7	1	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117543510	T	T	117543510	3	4	146	1	0	0	0	0	1	0	0	0	17423	130	5	5	1634	5	WDR44	23	117543510	Missense_Mutation	SNP	A	TCGA-49-6744-01A-11D-1855-08	2668865	117543510	37727050	568	127008											
WDR44	54521	broad.mit.edu	37	chrX	117566679	117566679	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgctgagagaacagatgGggtgggaagaatgtgaaact	15	3	0	5			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117566679	A	A	117566679	1	1	146	0	1	0	0	0	0	0	0	0	17423	1247	43	4		4	WDR44	23	117566679	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	23169	117566679	37703881	569	127009											
ATP1B4	23439	broad.mit.edu	37	chrX	119505001	119505001	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccatagccttaacttcaaCttcaacgtttctgaacccga	5	14	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119505001	G	G	119505001	3	3	146	1	0	0	0	0	1	0	0	0	1139	564	20	4	512	4	ATP1B4	23	119505001	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1938322	119505001	35765559	570	127010											
CUL4B	8450	broad.mit.edu	37	chrX	119668355	119668355	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctattccagttgcctgcttGatctcttctaaactgaactc	5	13	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119668355	T	T	119668355	2	4	146	1	0	0	0	0	0	0	0	1	4091	1280	45	3		3	CUL4B	23	119668355	Silent	SNP	G	TCGA-49-6744-01A-11D-1855-08	163354	119668355	35602205	571	127011											
THOC2	57187	broad.mit.edu	37	chrX	122760347	122760347	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtaatttaccagcatcagGaacctaacaattccaacaac	4	12	1	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122760347	T	T	122760347	1	4	146	0	1	0	0	0	0	0	0	0	15988	1189	41	3		3	THOC2	23	122760347	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	3091992	122760347	32510213	572	127012											
GPR112	139378	broad.mit.edu	37	chrX	135430312	135430312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acggttttacagttctctccGacaggatcactacagccttt	7	12	2	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135430312	T	T	135430312	3	4	146	1	0	0	0	0	1	0	0	0	6694	1058	37	3	4457	3	GPR112	23	135430312	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	12669965	135430312	19840248	573	127013											
AFF2	2334	broad.mit.edu	37	chrX	148037839	148037839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgtggtgccagcctgaCcctcagcaccttaatgagta	9	12	2	2			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148037839	A	A	148037839	3	1	146	1	0	0	0	0	1	0	0	0	357	507	18	3	2361	3	AFF2	23	148037839	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	12607527	148037839	7232721	574	127014											
MTM1	4534	broad.mit.edu	37	chrX	149807597	149807597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaaaatcagcgacatcCttgctaaatatcttttcaat	4	9	4	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149807597	A	A	149807597	1	1	146	0	1	0	0	0	0	0	0	0	10031	696	24	2		2	MTM1	23	149807597	Intron	SNP	C	TCGA-49-6744-01A-11D-1855-08	1769758	149807597	5462963	575	127015											
GABRA3	2556	broad.mit.edu	37	chrX	151336800	151336800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcacaggaaagatgatgCgggaaattttgtcaaccttg	12	6	1	3			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151336800	A	A	151336800	3	1	146	1	0	0	0	0	1	0	0	0	6222	768	27	3	103	3	GABRA3	23	151336800	Missense_Mutation	SNP	C	TCGA-49-6744-01A-11D-1855-08	1529203	151336800	3933760	576	127016											
PLXNB3	5365	broad.mit.edu	37	chrX	153033677	153033677	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctgctctcttccggggGctgattctccacttcctgcc	8	17	3	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153033677	C	C	153033677	1	2	146	0	1	0	0	0	0	0	0	0	12220	1218	42	4		4	PLXNB3	23	153033677	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	1696877	153033677	2236883	577	127017											
IDH3G	3421	broad.mit.edu	37	chrX	153053616	153053616	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacacaacacaggcttagtGgcactgcccatccccgcccc	7	18	0	0			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153053616	C	C	153053616	1	2	146	0	1	0	0	0	0	0	0	0	7568	1363	47	4		4	IDH3G	23	153053616	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	19939	153053616	2216944	578	127018											
L1CAM	3897	broad.mit.edu	37	chrX	153135357	153135357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcctggcccatatagatGgctctggggcttgtgcagcc	12	13	2	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153135357	T	T	153135357	3	4	146	1	0	0	0	0	1	0	0	0	8660	1348	47	2	2829	2	L1CAM	23	153135357	Missense_Mutation	SNP	G	TCGA-49-6744-01A-11D-1855-08	81741	153135357	2135203	579	127019											
TAZ	6901	broad.mit.edu	37	chrX	153648608	153648608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgctttggacaggtggGtggggactgctgaccttcgg	16	12	0	1			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153648608	T	T	153648608	1	4	146	0	1	0	0	0	0	0	0	0	15715	1276	44	3		3	TAZ	23	153648608	Intron	SNP	G	TCGA-49-6744-01A-11D-1855-08	513251	153648608	1621952	580	127020											
RAP1GAP	5909	broad.mit.edu	37	chr1	21940151	21940151	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacaacattagggaactcGgtgaggcaggagatggggat	17	5	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21940151	A	A	21940151	2	1	147	1	0	0	0	0	0	0	0	1	13145	1103	39	4		4	RAP1GAP	1	21940151	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08		21940151	227310470	1	127021											
HIVEP3	59269	broad.mit.edu	37	chr1	41978999	41978999	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaccacggtcttcttgGggacacaggcttgtagctca	14	10	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41978999	T	T	41978999	3	4	147	1	0	0	0	0	1	0	0	0	7255	1232	43	2	1335	2	HIVEP3	1	41978999	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	20038848	41978999	207271622	2	127022											
ZCCHC11	23318	broad.mit.edu	37	chr1	52911672	52911672	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttatgattcaagtcaaaAgggtctacaaaagaaatata	8	4	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52911672	G	G	52911672	2	3	147	1	0	0	0	0	0	0	0	1	17706	59	3	5		5	ZCCHC11	1	52911672	Silent	SNP	A	TCGA-49-6745-01A-11D-1855-08	10932673	52911672	196338949	3	127023											
NFIA	4774	broad.mit.edu	37	chr1	61554263	61554263	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtaaagtccccacaatgctCtaatccagggctctgtgtcc	8	13	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61554263	G	G	61554263	3	3	147	1	0	0	0	0	1	0	0	0	10465	913	32	4	622	4	NFIA	1	61554263	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	8642591	61554263	187696358	4	127024											
DPYD	1806	broad.mit.edu	37	chr1	97956166	97956166	+	Intron	SNP	G	C	C													ttaatctctagaataaaagaGaaagaaaagaaaaaatagaa							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97956166	C	C	97956166	1	2	147	0	1	0	0	0	0	0	0	0	4785	957	33	4		4	DPYD	1	97956166	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	36401903	97956166	151294455	5	127025	550	2									
DPYD	1806	broad.mit.edu	37	chr1	97956170	97956170	+	Intron	SNP	G	A	A													tctctagaataaaagagaaaGaaaagaaaaaatagaaacac							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97956170	A	A	97956170	1	1	147	0	1	0	0	0	0	0	0	0	4785	957	33	4		4	DPYD	1	97956170	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	4	97956170	151294451	6	127026	550	2									
AGL	178	broad.mit.edu	37	chr1	100346852	100346852	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttacctttgtccagatttCagtggtttctgaagaacggt	9	7	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100346852	T	T	100346852	3	4	147	1	0	0	0	0	1	0	0	0	384	838	29	4	2133	4	AGL	1	100346852	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	2390682	100346852	148903769	7	127027											
AGL	178	broad.mit.edu	37	chr1	100346961	100346961	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgcagccaggtgtgctatCagtaaacttcatcaggagct	10	9	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100346961	A	A	100346961	2	1	147	1	0	0	0	0	0	0	0	1	384	816	29	3		3	AGL	1	100346961	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	109	100346961	148903660	8	127028											
RTCD1	8634	broad.mit.edu	37	chr1	100736363	100736363	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcatggtgtcttttctttCtttctttctttttttttttg	4	7	6	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100736363	T	T	100736363	1	4	147	0	1	0	0	0	0	0	0	0	13829	928	32	4		4	RTCD1	1	100736363	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	389402	100736363	148514258	9	127029											
AMPD2	271	broad.mit.edu	37	chr1	110168292	110168292	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctccccccaggagctgttCacccgctcactggctgagag	10	18	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110168292	G	G	110168292	3	3	147	1	0	0	0	0	1	0	0	0	586	825	29	4	444	4	AMPD2	1	110168292	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	9431929	110168292	139082329	10	127030											
SPAG17	200162	broad.mit.edu	37	chr1	118616659	118616659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggagccctcttgggctcCgtcaactaaccagtatgtac	9	12	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118616659	A	A	118616659	1	1	147	0	1	0	0	0	0	0	0	0	15095	667	23	1		1	SPAG17	1	118616659	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	8448367	118616659	130633962	11	127031											
NBPF9	400818	broad.mit.edu	37	chr1	144169709	144169709	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctctctctctctctccctCcctctccctgtctttctctt	1	21	7	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144169709	T	T	144169709	1	4	147	0	1	0	0	0	0	0	0	0	10294	870	30	4		4	NBPF9	1	144169709	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	25553050	144169709	105080912	12	127032											
HORMAD1	84072	broad.mit.edu	37	chr1	150672761	150672761	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaatatttatttatttaTttactttttagggacagggt	7	3	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150672761	C	C	150672761	1	2	147	0	1	0	0	0	0	0	0	0	7353	1508	52	5		5	HORMAD1	1	150672761	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	6503052	150672761	98577860	13	127033											
ZBTB7B	51043	broad.mit.edu	37	chr1	154987740	154987740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgttgcccgccgcagcCgcaagccccggaaagctttc	12	17	0	0	rs150590726		TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154987740	A	A	154987740	3	1	147	1	0	0	0	0	1	0	0	0	17680	652	23	1	606	1	ZBTB7B	1	154987740	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	4314979	154987740	94262881	14	127034											
DCST1	149095	broad.mit.edu	37	chr1	155018645	155018645	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaaagctgaggagaaaacCgtcatcttcccttgcaagcc	9	13	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155018645	A	A	155018645	2	1	147	1	0	0	0	0	0	0	0	1	4335	639	23	1		1	DCST1	1	155018645	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	30905	155018645	94231976	15	127035											
MEF2D	4209	broad.mit.edu	37	chr1	156437572	156437572	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccagctgtgaggggaagAagtcatcgagcagaaggact	17	7	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156437572	G	G	156437572	1	3	147	0	1	0	0	0	0	0	0	0	9551	261	9	5		5	MEF2D	1	156437572	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	1418927	156437572	92813049	16	127036											
BAT2L2	23215	broad.mit.edu	37	chr1	171506560	171506560	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagatccctatcctcatgctGagcctcaacaagcaactact	5	15	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171506560	A	A	171506560	3	1	147	1	0	0	0	0	1	0	0	0	1326	1291	45	4	2500	4	BAT2L2	1	171506560	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	15068988	171506560	77744061	17	127037											
C1orf26	54823	broad.mit.edu	37	chr1	185153948	185153948	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtatgaaggaaggaaaactActaaaacgtgcccagcacaa	9	9	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185153948	G	G	185153948	2	3	147	1	0	0	0	0	0	0	0	1	2057	378	14	5		5	C1orf26	1	185153948	Silent	SNP	A	TCGA-49-6745-01A-11D-1855-08	13647388	185153948	64096673	18	127038											
CFHR4	10877	broad.mit.edu	37	chr1	196871772	196871772	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacctctttacaagaatatGtgcataaaacttgaaaagag	6	6	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196871772	A	A	196871772	1	1	147	0	1	0	0	0	0	0	0	0	3317	1392	48	4		4	CFHR4	1	196871772	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	11717824	196871772	52378849	19	127039											
LHX9	56956	broad.mit.edu	37	chr1	197890806	197890806	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggtgtgcctcctatcctCacccccggcgcagccccggc	10	20	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197890806	T	T	197890806	1	4	147	0	1	0	0	0	0	0	0	0	8849	841	29	4		4	LHX9	1	197890806	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	1019034	197890806	51359815	20	127040											
IPO9	55705	broad.mit.edu	37	chr1	201823862	201823862	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtaaacacttactaccaatGaaatatttggagtttgaggg	10	5	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201823862	A	A	201823862	1	1	147	0	1	0	0	0	0	0	0	0	7869	1305	45	4		4	IPO9	1	201823862	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	3933056	201823862	47426759	21	127041											
HIST3H2BB	128312	broad.mit.edu	37	chr1	228646248	228646248	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaacccaaaggctcttttCagagccacccacacgatcaa	6	15	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228646248	T	T	228646248	1	4	147	0	1	0	0	0	0	0	0	0	7250	841	29	4		4	HIST3H2BB	1	228646248	3'UTR	SNP	C	TCGA-49-6745-01A-11D-1855-08	26822386	228646248	20604373	22	127042											
NLRP3	114548	broad.mit.edu	37	chr1	247588432	247588432	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagacgtgacagtccttctgGaaaactatggcaaattcgaa	10	8	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588432	A	A	247588432	3	1	147	1	0	0	0	0	1	0	0	0	10573	1175	41	4	1697	4	NLRP3	1	247588432	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	18942184	247588432	1662189	23	127043											
SH3BP5L	80851	broad.mit.edu	37	chr1	249111095	249111095	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caactcctcctgccacagagAggggtggcaaattagtgcag	12	11	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	249111095	T	T	249111095	1	4	147	0	1	0	0	0	0	0	0	0	14361	319	11	5		5	SH3BP5L	1	249111095	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	1522663	249111095	139526	24	127044											
ALLC	55821	broad.mit.edu	37	chr2	3744967	3744967	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggcattctcttggttccGggttgtgaatgggcagtttt	13	6	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3744967	A	A	3744967	2	1	147	1	0	0	0	0	0	0	0	1	534	1103	39	4		4	ALLC	2	3744967	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08		3744967	239454406	25	127045											
DDX1	1653	broad.mit.edu	37	chr2	15753331	15753331	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttttttatattatcatCttgatatttatttcagggag	5	3	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15753331	G	G	15753331	1	3	147	0	1	0	0	0	0	0	0	0	4374	928	32	4		4	DDX1	2	15753331	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	12008364	15753331	227446042	26	127046											
GPR113	165082	broad.mit.edu	37	chr2	26534970	26534970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaaaagaaagatgaaccCcgtctgctggcgcccacagg	10	14	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26534970	A	A	26534970	1	1	147	0	1	0	0	0	0	0	0	0	6695	638	22	2		2	GPR113	2	26534970	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	10781639	26534970	216664403	27	127047											
CAD	790	broad.mit.edu	37	chr2	27465046	27465046	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggctggacccaggggcatGagaacccttctgcccacgtt	12	13	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27465046	A	A	27465046	1	1	147	0	1	0	0	0	0	0	0	0	2591	1305	45	4		4	CAD	2	27465046	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	930076	27465046	215734327	28	127048											
EIF2B4	8890	broad.mit.edu	37	chr2	27587635	27587635	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacacgctcacagaacttgTatgtttcacagcaaaccagc	7	13	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27587635	C	C	27587635	3	2	147	1	0	0	0	0	1	0	0	0	5043	1638	57	5	257	5	EIF2B4	2	27587635	Missense_Mutation	SNP	T	TCGA-49-6745-01A-11D-1855-08	122589	27587635	215611738	29	127049											
LTBP1	4052	broad.mit.edu	37	chr2	33411916	33411916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatgttttctcttttccCttttagtaatttgccatctt	3	11	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33411916	A	A	33411916	1	1	147	0	1	0	0	0	0	0	0	0	9160	696	24	2		2	LTBP1	2	33411916	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	5824281	33411916	209787457	30	127050											
SOS1	6654	broad.mit.edu	37	chr2	39234206	39234206	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctagtctgtaaacaggtgatGaattcatagcactgacaacc	8	9	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39234206	A	A	39234206	3	1	147	1	0	0	0	0	1	0	0	0	15050	1294	45	4	1394	4	SOS1	2	39234206	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	5822290	39234206	203965167	31	127051											
ABCG5	64240	broad.mit.edu	37	chr2	44051398	44051398	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagaaaactccaggagaatCtttggttttgaaaggaacca	10	6	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44051398	G	G	44051398	3	3	147	1	0	0	0	0	1	0	0	0	71	913	32	4	901	4	ABCG5	2	44051398	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	4817192	44051398	199147975	32	127052											
ABCG5	64240	broad.mit.edu	37	chr2	44051514	44051514	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagattctatcatctggactCtcttggaggtttctatttcc	7	10	5	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44051514	G	G	44051514	3	3	147	1	0	0	0	0	1	0	0	0	71	913	32	4	1017	4	ABCG5	2	44051514	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	116	44051514	199147859	33	127053											
APLF	200558	broad.mit.edu	37	chr2	68740838	68740838	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttgtttctactaatgctGactttaaaggaaacattaaa	5	5	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68740838	A	A	68740838	1	1	147	0	1	0	0	0	0	0	0	0	778	1305	45	4		4	APLF	2	68740838	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	24689324	68740838	174458535	34	127054											
AAK1	22848	broad.mit.edu	37	chr2	69752304	69752304	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacagatttctttgttaaAgaataagcagcctgactggg	9	7	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69752304	G	G	69752304	1	3	147	0	1	0	0	0	0	0	0	0	16	87	3	5		5	AAK1	2	69752304	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	1011466	69752304	173447069	35	127055											
CTNNA2	1496	broad.mit.edu	37	chr2	80085262	80085262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacgcttactcatcctggCggacatggcagatgtcatga	11	11	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80085262	T	T	80085262	3	4	147	1	0	0	0	0	1	0	0	0	4047	768	27	4	432	4	CTNNA2	2	80085262	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	10332958	80085262	163114111	36	127056											
IMMT	10989	broad.mit.edu	37	chr2	86406604	86406604	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgcaggaccaagaaccatCtcgaagagtttgtctgagta	11	9	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86406604	T	T	86406604	2	4	147	1	0	0	0	0	0	0	0	1	7788	912	32	4		4	IMMT	2	86406604	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	6321342	86406604	156792769	37	127057											
STARD7	56910	broad.mit.edu	37	chr2	96858014	96858014	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagcgagaactgttcctgCgccacaccccctcctcccta	7	20	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96858014	T	T	96858014	1	4	147	0	1	0	0	0	0	0	0	0	15380	783	27	4		4	STARD7	2	96858014	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	10451410	96858014	146341359	38	127058											
THSD7B	80731	broad.mit.edu	37	chr2	138000026	138000026	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggtcttttcacattgacaGatgtccagattctactcgac	7	10	3	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138000026	A	A	138000026	5	1	147	1	0	0	0	0	0	0	1	0	16003	956	33	4	2091	4	THSD7B	2	138000026	Splice_Site	SNP	G	TCGA-49-6745-01A-11D-1855-08	41142012	138000026	105199347	39	127059											
LRP1B	53353	broad.mit.edu	37	chr2	141283884	141283884	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttggaatacaagtcccatCtgcacagcggaactcaaccg	8	13	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141283884	A	A	141283884	3	1	147	1	0	0	0	0	1	0	0	0	9042	913	32	3	6177	3	LRP1B	2	141283884	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	3283858	141283884	101915489	40	127060											
ACVR2A	92	broad.mit.edu	37	chr2	148683830	148683830	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttcttctgcaagtattttCtggaaggtgatcttcacaca	7	9	5	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148683830	G	G	148683830	1	3	147	0	1	0	0	0	0	0	0	0	223	928	32	4		4	ACVR2A	2	148683830	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	7399946	148683830	94515543	41	127061											
PLA2R1	22925	broad.mit.edu	37	chr2	160825826	160825826	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattcacagttctttctcttCctgtgtcccagttctggtat	6	11	4	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160825826	T	T	160825826	3	4	147	1	0	0	0	0	1	0	0	0	12105	855	30	4	1742	4	PLA2R1	2	160825826	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	12141996	160825826	82373547	42	127062											
TTC21B	79809	broad.mit.edu	37	chr2	166789417	166789417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatatgcacatgcacacatGggtgtgtatgtgtaatgaaa	11	5	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166789417	T	T	166789417	1	4	147	0	1	0	0	0	0	0	0	0	16814	1363	47	2		2	TTC21B	2	166789417	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	5963591	166789417	76409956	43	127063											
GAD1	2571	broad.mit.edu	37	chr2	171704381	171704381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttgcctcaagcttctccCcacgccccagccagccctct	6	21	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171704381	A	A	171704381	1	1	147	0	1	0	0	0	0	0	0	0	6239	638	22	2		2	GAD1	2	171704381	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	4914964	171704381	71494992	44	127064											
TTN	7273	broad.mit.edu	37	chr2	179644903	179644903	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgataaagcatttcttGctgggacttcatcagtaact	8	8	4	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179644903	A	A	179644903	4	1	147	1	0	0	0	0	0	1	0	0	16861	1328	46	4	107799	4	TTN	2	179644903	Nonsense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	7940522	179644903	63554470	45	127065											
ANKRD44	91526	broad.mit.edu	37	chr2	197873717	197873717	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctccgggttgtctgcaatttCtagcaacagccgtaaacaca	8	12	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197873717	G	G	197873717	3	3	147	1	0	0	0	0	1	0	0	0	672	922	32	4	903	4	ANKRD44	2	197873717	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	18228814	197873717	45325656	46	127066											
MDH1B	130752	broad.mit.edu	37	chr2	207621660	207621660	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggggttgatgcaagttttCagggcttcttcctcctgctc	11	10	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207621660	T	T	207621660	2	4	147	1	0	0	0	0	0	0	0	1	9502	813	29	4		4	MDH1B	2	207621660	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	9747943	207621660	35577713	47	127067											
IKZF2	22807	broad.mit.edu	37	chr2	213886806	213886806	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctcctccagtgaactgCgctgcttgtagcttcgtcca	10	13	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213886806	T	T	213886806	3	4	147	1	0	0	0	0	1	0	0	0	7685	768	27	4	969	4	IKZF2	2	213886806	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	6265146	213886806	29312567	48	127068											
AAMP	14	broad.mit.edu	37	chr2	219131553	219131553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccacagagctgactccCgctctgatgatcttacctcc	8	17	2	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219131553	A	A	219131553	1	1	147	0	1	0	0	0	0	0	0	0	17	667	23	1		1	AAMP	2	219131553	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	5244747	219131553	24067820	49	127069											
SPEG	10290	broad.mit.edu	37	chr2	220355150	220355150	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggccgctttggtgttgtgCgagcgtgccgggagaatgcc	19	9	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220355150	T	T	220355150	4	4	147	1	0	0	0	0	0	1	0	0	15154	760	27	4	9099	4	SPEG	2	220355150	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	1223597	220355150	22844223	50	127070											
STK11IP	114790	broad.mit.edu	37	chr2	220480797	220480797	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcttttgggcactccGtgtggtgtgtcaggagcagc	17	8	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220480797	A	A	220480797	3	1	147	1	0	0	0	0	1	0	0	0	15406	1145	40	4	3280	4	STK11IP	2	220480797	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	125647	220480797	22718576	51	127071											
WDR69	164781	broad.mit.edu	37	chr2	228762979	228762979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttaccataccttcagGggtcatacagcagaaatagt	8	8	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228762979	T	T	228762979	3	4	147	1	0	0	0	0	1	0	0	0	17446	1223	43	2	544	2	WDR69	2	228762979	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	8282182	228762979	14436394	52	127072											
ZNF660	285349	broad.mit.edu	37	chr3	44635871	44635871	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaaagcctttagtcagagTgcaaacctcacagtacatga	10	9	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44635871	A	A	44635871	3	1	147	1	0	0	0	0	1	0	0	0	18197	1693	59	5	188	5	ZNF660	3	44635871	Missense_Mutation	SNP	T	TCGA-49-6745-01A-11D-1855-08		44635871	153386559	53	127073											
C3orf75	54859	broad.mit.edu	37	chr3	47545917	47545917	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaagctgcccacgctcccGcgccatggtcaggctgacac	10	18	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47545917	A	A	47545917	3	1	147	1	0	0	0	0	1	0	0	0	2267	1086	38	4	590	4	C3orf75	3	47545917	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	2910046	47545917	150476513	54	127074											
SEMA3G	56920	broad.mit.edu	37	chr3	52476353	52476353	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagggggtggttgaggggtGagagggggtgcccaccatct	22	6	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52476353	A	A	52476353	1	1	147	0	1	0	0	0	0	0	0	0	14143	1305	45	4		4	SEMA3G	3	52476353	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	4930436	52476353	145546077	55	127075											
ITIH1	3697	broad.mit.edu	37	chr3	52825981	52825981	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggcagaggaggaggaCgacatcctgacctgctgctg	15	11	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825981	T	T	52825981	1	4	147	0	1	0	0	0	0	0	0	0	7973	551	19	4		4	ITIH1	3	52825981	3'UTR	SNP	C	TCGA-49-6745-01A-11D-1855-08	349628	52825981	145196449	56	127076											
ERC2	26059	broad.mit.edu	37	chr3	55717937	55717937	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagaggaggggagcaccaGaatgaaagaagagaaggtta	16	4	0	5			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55717937	C	C	55717937	1	2	147	0	1	0	0	0	0	0	0	0	5253	957	33	4		4	ERC2	3	55717937	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	2891956	55717937	142304493	57	127077											
TMF1	7110	broad.mit.edu	37	chr3	69073259	69073259	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccttctcttcaagttcatCattttgatttgttaatttaa	3	8	4	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69073259	T	T	69073259	3	4	147	1	0	0	0	0	1	0	0	0	16351	826	29	4	204	4	TMF1	3	69073259	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	13355322	69073259	128949171	58	127078											
PROK2	60675	broad.mit.edu	37	chr3	71830623	71830623	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatatatatactaactttacGagtcagtggatggcagctgt	9	6	1	0	rs121434272		TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71830623	A	A	71830623	3	1	147	1	0	0	0	0	1	0	0	0	12657	1058	37	4	184	4	PROK2	3	71830623	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	2757364	71830623	126191807	59	127079											
ROBO2	6092	broad.mit.edu	37	chr3	77637907	77637907	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttttttccatagggagaCgcaatgaagttgtcattact	10	6	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77637907	T	T	77637907	3	4	147	1	0	0	0	0	1	0	0	0	13625	536	19	4	2574	4	ROBO2	3	77637907	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	5807284	77637907	120384523	60	127080											
ROBO1	6091	broad.mit.edu	37	chr3	78988027	78988027	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgagacaatcaggtctgAagggtgttcaacaatgcgag	12	6	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78988027	G	G	78988027	3	3	147	1	0	0	0	0	1	0	0	0	13624	246	9	5	4857	5	ROBO1	3	78988027	Missense_Mutation	SNP	A	TCGA-49-6745-01A-11D-1855-08	1350120	78988027	119034403	61	127081											
BOC	91653	broad.mit.edu	37	chr3	112997025	112997025	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcaccagacttgacccCgggagcttgtatgaagtgga	11	12	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112997025	A	A	112997025	2	1	147	1	0	0	0	0	0	0	0	1	1487	639	23	1		1	BOC	3	112997025	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	34008998	112997025	85025405	62	127082											
ZBTB20	26137	broad.mit.edu	37	chr3	114057716	114057716	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttcatgtagtacaaaatGaaacgaaacaaaaacaaaaa	4	6	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114057716	C	C	114057716	1	2	147	0	1	0	0	0	0	0	0	0	17655	1305	45	4		4	ZBTB20	3	114057716	3'UTR	SNP	G	TCGA-49-6745-01A-11D-1855-08	1060691	114057716	83964714	63	127083											
POPDC2	64091	broad.mit.edu	37	chr3	119367417	119367417	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatatcccagcagagccgaGaagaggcaggagatgtatcg	13	9	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119367417	A	A	119367417	2	1	147	1	0	0	0	0	0	0	0	1	12350	933	33	4		4	POPDC2	3	119367417	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	5309701	119367417	78655013	64	127084											
ACAD9	28976	broad.mit.edu	37	chr3	128620262	128620262	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcgcccccagcttttgCcctatccctgctcgtagcag	8	16	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128620262	T	T	128620262	1	4	147	0	1	0	0	0	0	0	0	0	111	754	26	4		4	ACAD9	3	128620262	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	9252845	128620262	69402168	65	127085											
BFSP2	8419	broad.mit.edu	37	chr3	133129361	133129361	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaatgatcagcatagcaagGaatatcagcgctccaaatca	9	9	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133129361	A	A	133129361	1	1	147	0	1	0	0	0	0	0	0	0	1422	1189	41	4		4	BFSP2	3	133129361	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	4509099	133129361	64893069	66	127086											
STAG1	10274	broad.mit.edu	37	chr3	136341946	136341946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatataaactcattaacacGgtcactattaaaggaacaaa	4	8	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136341946	T	T	136341946	1	4	147	0	1	0	0	0	0	0	0	0	15360	1131	39	1		1	STAG1	3	136341946	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	3212585	136341946	61680484	67	127087											
FAM194A	131831	broad.mit.edu	37	chr3	150384882	150384882	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatccctgtcacttgctaacCaaggggagtaacggtttatg	10	9	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150384882	T	T	150384882	1	4	147	0	1	0	0	0	0	0	0	0	5573	609	21	4		4	FAM194A	3	150384882	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	14042936	150384882	47637548	68	127088											
MBNL1	4154	broad.mit.edu	37	chr3	152177135	152177136	+	Splice_Site	DEL	GT	-	-													agaattttcatcactaaacaGtaagttcattatgtaatata							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152177136	-	-	152177135	8	5	147	1	0	1	0	1	0	0	1	0	9446	1043	36	0		0	MBNL1	3	152177135	Splice_Site	DEL	GT	TCGA-49-6745-01A-11D-1855-08	1792253	152177135	45845295	69	127089											
DHX36	170506	broad.mit.edu	37	chr3	154027503	154027503	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaagcagatccttttcctCtttcaatgtagttatccaaa	5	10	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154027503	T	T	154027503	3	4	147	1	0	0	0	0	1	0	0	0	4549	913	32	4	2358	4	DHX36	3	154027503	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	1850368	154027503	43994927	70	127090											
SLC7A14	57709	broad.mit.edu	37	chr3	170218742	170218742	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaattattttttaaggatgGatagattcatagagaaagaa	9	1	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170218742	A	A	170218742	1	1	147	0	1	0	0	0	0	0	0	0	14810	1189	41	4		4	SLC7A14	3	170218742	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	16191239	170218742	27803688	71	127091											
PSMD2	5708	broad.mit.edu	37	chr3	184026274	184026274	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactatgtattgtatgggctGgtggctgccatgcagccccg	13	11	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184026274	A	A	184026274	2	1	147	1	0	0	0	0	0	0	0	1	12804	1335	47	4		4	PSMD2	3	184026274	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	13807532	184026274	13996156	72	127092											
TM4SF19	116211	broad.mit.edu	37	chr3	196051381	196051381	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcggagggaggagaaaCgctgagctaagacggggtcg	19	8	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196051381	T	T	196051381	1	4	147	0	1	0	0	0	0	0	0	0	16091	551	19	4		4	TM4SF19	3	196051381	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	12025107	196051381	1971049	73	127093											
CPLX1	10815	broad.mit.edu	37	chr4	818257	818257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtcccctcagcccctccCcaccccacctcccgcttcct	3	26	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	818257	A	A	818257	1	1	147	0	1	0	0	0	0	0	0	0	3836	638	22	2		2	CPLX1	4	818257	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08		818257	190336019	74	127094											
EVC	2121	broad.mit.edu	37	chr4	5800411	5800411	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgaggcccaggaggtGgggcagcttctgcagcagca	17	12	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5800411	A	A	5800411	2	1	147	1	0	0	0	0	0	0	0	1	5327	1335	47	4		4	EVC	4	5800411	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	4982154	5800411	185353865	75	127095											
SLIT2	9353	broad.mit.edu	37	chr4	20523994	20523994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaccagtggtgcctgttaGggatggagaaaaagaatatt	14	4	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20523994	T	T	20523994	1	4	147	0	1	0	0	0	0	0	0	0	14854	1015	35	2		2	SLIT2	4	20523994	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	14723583	20523994	170630282	76	127096											
CHRNA9	55584	broad.mit.edu	37	chr4	40356452	40356452	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaatggaagaaggtggCgaaagtcatagaccgattct	14	5	2	3	rs139982841	byFrequency	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40356452	T	T	40356452	3	4	147	1	0	0	0	0	1	0	0	0	3420	768	27	4	1373	4	CHRNA9	4	40356452	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	19832458	40356452	150797824	77	127097											
LIMCH1	22998	broad.mit.edu	37	chr4	41691651	41691651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcacatccagtgtttcaGggtacgtacttactgctttg	8	9	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41691651	T	T	41691651	3	4	147	1	0	0	0	0	1	0	0	0	8869	1014	35	2	3248	2	LIMCH1	4	41691651	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	1335199	41691651	149462625	78	127098											
GABRB1	2560	broad.mit.edu	37	chr4	47033926	47033926	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggtccctacttcttcccCttagcaccaatgaacccagc	5	17	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47033926	T	T	47033926	1	4	147	0	1	0	0	0	0	0	0	0	6226	696	24	4		4	GABRB1	4	47033926	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	5342275	47033926	144120350	79	127099											
PDGFRA	5156	broad.mit.edu	37	chr4	55152190	55152190	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcactttaatctctaaagtCaggtgttgcttctagagatt	7	7	4	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55152190	T	T	55152190	1	4	147	0	1	0	0	0	0	0	0	0	11755	841	29	4		4	PDGFRA	4	55152190	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	8118264	55152190	136002086	80	127100											
CENPC1	1060	broad.mit.edu	37	chr4	68380366	68380366	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtatcatcgggaggacaCgaatgaggtggagcagttgc	15	7	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68380366	T	T	68380366	2	4	147	1	0	0	0	0	0	0	0	1	3259	523	19	4		4	CENPC1	4	68380366	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	13228176	68380366	122773910	81	127101											
GC	2638	broad.mit.edu	37	chr4	72633962	72633962	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacacgtggtataaaggcCtattttggcttccttctctg	8	10	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72633962	T	T	72633962	1	4	147	0	1	0	0	0	0	0	0	0	6344	696	24	4		4	GC	4	72633962	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	4253596	72633962	118520314	82	127102											
CCDC158	339965	broad.mit.edu	37	chr4	77290605	77290605	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccatctggccctgacactCgctcttcaaggccttgagca	8	16	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77290605	A	A	77290605	4	1	147	1	0	0	0	0	0	1	0	0	2817	893	31	3	2080	3	CCDC158	4	77290605	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	4656643	77290605	113863671	83	127103											
BMP2K	55589	broad.mit.edu	37	chr4	79832975	79832975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagggcctgagcgacatcCgtgctgatcacaatactgtc	10	12	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79832975	A	A	79832975	3	1	147	1	0	0	0	0	1	0	0	0	1466	652	23	1	3374	1	BMP2K	4	79832975	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	2542370	79832975	111321301	84	127104											
ARHGAP24	83478	broad.mit.edu	37	chr4	86916545	86916545	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctaccaccacctgcccaGagcaagacttttttgggggg	10	13	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86916545	A	A	86916545	3	1	147	1	0	0	0	0	1	0	0	0	875	943	33	4	1884	4	ARHGAP24	4	86916545	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	7083570	86916545	104237731	85	127105											
SYNPO2	171024	broad.mit.edu	37	chr4	119951360	119951360	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattgaaaagaaactgaacaGaggggacaagatggagatgt	13	4	0	6			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119951360	C	C	119951360	3	2	147	1	0	0	0	0	1	0	0	0	15576	942	33	4	1444	4	SYNPO2	4	119951360	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	33034815	119951360	71202916	86	127106											
C4orf3	401152	broad.mit.edu	37	chr4	120221707	120221707	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatctcgctcctgcagcttCgtaacaaccctagaaaccga	6	16	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120221707	T	T	120221707	1	4	147	0	1	0	0	0	0	0	0	0	2283	884	31	4		4	C4orf3	4	120221707	5'UTR	SNP	C	TCGA-49-6745-01A-11D-1855-08	270347	120221707	70932569	87	127107											
GUCY1A3	2982	broad.mit.edu	37	chr4	156631662	156631662	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttaccaaggtggcatatttGatatggcagaacatgtatta	9	5	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156631662	A	A	156631662	1	1	147	0	1	0	0	0	0	0	0	0	6959	1305	45	4		4	GUCY1A3	4	156631662	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	36409955	156631662	34522614	88	127108											
KLHL2	11275	broad.mit.edu	37	chr4	166243064	166243064	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaagtttaagaaagagattCtgaaacatgatttgtacagt	8	3	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166243064	G	G	166243064	1	3	147	0	1	0	0	0	0	0	0	0	8445	928	32	4		4	KLHL2	4	166243064	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	9611402	166243064	24911212	89	127109											
TRIML2	205860	broad.mit.edu	37	chr4	189018140	189018140	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaactactggaatttgttttCatttatggcaggatggtcac	9	6	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189018140	T	T	189018140	1	4	147	0	1	0	0	0	0	0	0	0	16676	841	29	4		4	TRIML2	4	189018140	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	22775076	189018140	2136136	90	127110											
CLPTM1L	81037	broad.mit.edu	37	chr5	1339046	1339046	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttgtccgccatcacgttCagcgccagccgcggtcgcca	11	16	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1339046	T	T	1339046	2	4	147	1	0	0	0	0	0	0	0	1	3587	813	29	4		4	CLPTM1L	5	1339046	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08		1339046	179576214	91	127111											
PTGER4	5734	broad.mit.edu	37	chr5	40692192	40692192	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagatcagcagtacatctcaGaccctcctgccagacctctc	7	16	3	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40692192	C	C	40692192	3	2	147	1	0	0	0	0	1	0	0	0	12851	933	33	4	1185	4	PTGER4	5	40692192	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	39353146	40692192	140223068	92	127112											
THBS4	7060	broad.mit.edu	37	chr5	79354497	79354497	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttagaaatgaccatcactgGctgaaaactctttgcctttt	6	10	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79354497	A	A	79354497	1	1	147	0	1	0	0	0	0	0	0	0	15979	1218	42	4		4	THBS4	5	79354497	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	38662305	79354497	101560763	93	127113											
DMXL1	1657	broad.mit.edu	37	chr5	118485852	118485852	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattatctaaagaaagttatGatgagctttttcagactcaa	6	5	3	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118485852	C	C	118485852	3	2	147	1	0	0	0	0	1	0	0	0	4634	1290	45	4	4400	4	DMXL1	5	118485852	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	39131355	118485852	62429408	94	127114											
RBM22	55696	broad.mit.edu	37	chr5	150078892	150078892	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagaaaaaagccagatgtCtactctttccttaaacataa	5	8	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150078892	A	A	150078892	1	1	147	0	1	0	0	0	0	0	0	0	13230	928	32	3		3	RBM22	5	150078892	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	31593040	150078892	30836368	95	127115											
FAM71B	153745	broad.mit.edu	37	chr5	156589882	156589882	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatgcggaccggtgggaaGacgctttctgattcttgtcc	13	10	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156589882	T	T	156589882	3	4	147	1	0	0	0	0	1	0	0	0	5659	942	33	3	427	3	FAM71B	5	156589882	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	6510990	156589882	24325378	96	127116											
THG1L	54974	broad.mit.edu	37	chr5	157158724	157158724	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaagtcctcccgcccgcTccagtcacggttaccagggt	10	16	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157158724	C	C	157158724	1	2	147	0	1	0	0	0	0	0	0	0	15984	1566	54	5		5	THG1L	5	157158724	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	568842	157158724	23756536	97	127117											
DOCK2	1794	broad.mit.edu	37	chr5	169472741	169472741	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcccaggaagcacagctaCgcctgagtcccttcctcagc	9	16	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169472741	T	T	169472741	1	4	147	0	1	0	0	0	0	0	0	0	4727	551	19	4		4	DOCK2	5	169472741	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	12314017	169472741	11442519	98	127118											
C5orf58	133874	broad.mit.edu	37	chr5	169661199	169661199	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagaggcaaggattgacttAaaggttagtttgttttcatt	11	3	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169661199	C	C	169661199	3	2	147	1	0	0	0	0	1	0	0	0	2336	359	13	5	62	5	C5orf58	5	169661199	Missense_Mutation	SNP	A	TCGA-49-6745-01A-11D-1855-08	188458	169661199	11254061	99	127119											
NSD1	64324	broad.mit.edu	37	chr5	176636857	176636857	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcttttgattctgaacattCtgcagatgagaaggaaaagc	11	6	2	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176636857	G	G	176636857	3	3	147	1	0	0	0	0	1	0	0	0	10764	913	32	4	1471	4	NSD1	5	176636857	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	6975658	176636857	4278403	100	127120											
CLK4	57396	broad.mit.edu	37	chr5	178044503	178044503	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcagagtgaattcagggcaGaatacgcaattcattcagcg	10	8	4	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178044503	A	A	178044503	1	1	147	0	1	0	0	0	0	0	0	0	3571	957	33	4		4	CLK4	5	178044503	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	1407646	178044503	2870757	101	127121											
ADAMTS2	9509	broad.mit.edu	37	chr5	178634735	178634735	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcaaggagaggacaccGtcttcagcggcagggcaaac	13	13	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178634735	A	A	178634735	1	1	147	0	1	0	0	0	0	0	0	0	265	1160	40	4		4	ADAMTS2	5	178634735	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	590232	178634735	2280525	102	127122											
HIST1H2BA	255626	broad.mit.edu	37	chr6	25726197	25726197	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcagtccccgtacattccCgaaatgcgcttaaacgggca	8	13	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25726197	T	T	25726197	1	4	147	0	1	0	0	0	0	0	0	0	7207	667	23	4		4	HIST1H2BA	6	25726197	5'Flank	SNP	C	TCGA-49-6745-01A-11D-1855-08		25726197	145388870	103	127123											
HIST1H2BO	8348	broad.mit.edu	37	chr6	27861501	27861501	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcgcattacaacaagcgCtcgaccatcacctccaggga	9	15	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27861501	G	G	27861501	2	3	147	1	0	0	0	0	0	0	0	1	7221	784	28	4		4	HIST1H2BO	6	27861501	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	2135304	27861501	143253566	104	127124											
DDR1	780	broad.mit.edu	37	chr6	30859339	30859339	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgagagTgtgtgtgtgtaggggggctg	22	1	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30859339	A	A	30859339	1	1	147	0	1	0	0	0	0	0	0	0	4369	1711	59	5		5	DDR1	6	30859339	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	2997838	30859339	140255728	105	127125											
LY6G5C	80741	broad.mit.edu	37	chr6	31646823	31646823	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggtgcagcttaggaggctGagagagtttccgtttgggag	19	5	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31646823	C	C	31646823	1	2	147	0	1	0	0	0	0	0	0	0	9181	1305	45	4		4	LY6G5C	6	31646823	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	787484	31646823	139468244	106	127126											
CFB	629	broad.mit.edu	37	chr6	31901414	31901414	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgccccaacccaggcatttCactgggcgcagtgcggacag	12	15	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31901414	T	T	31901414	3	4	147	1	0	0	0	0	1	0	0	0	3308	838	29	4		4	CFB	6	31901414	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	254591	31901414	139213653	107	127127											
ATF6B	1388	broad.mit.edu	37	chr6	32096445	32096445	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctctggccccccacccCcaaatctcacagcacagacc	4	22	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32096445	A	A	32096445	1	1	147	0	1	0	0	0	0	0	0	0	1089	638	22	2		2	ATF6B	6	32096445	5'Flank	SNP	C	TCGA-49-6745-01A-11D-1855-08	195031	32096445	139018622	108	127128											
ITPR3	3710	broad.mit.edu	37	chr6	33655052	33655052	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggaagagcgtgagaactCggaggtgagcccacgtgaag	18	7	0	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33655052	T	T	33655052	3	4	147	1	0	0	0	0	1	0	0	0	7992	893	31	4	6303	4	ITPR3	6	33655052	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	1558607	33655052	137460015	109	127129											
DNAH8	1769	broad.mit.edu	37	chr6	38905910	38905910	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccacccgcggaagcatcctCtacttcctcatcacagagat	7	16	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38905910	G	G	38905910	2	3	147	1	0	0	0	0	0	0	0	1	4647	900	32	4		4	DNAH8	6	38905910	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	5250858	38905910	132209157	110	127130											
KIF6	221458	broad.mit.edu	37	chr6	39581035	39581035	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcctctgtggttgcctgaTggagagtcaagtttttcagg	12	8	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39581035	A	A	39581035	3	1	147	1	0	0	0	0	1	0	0	0	8378	1464	51	5	1947	5	KIF6	6	39581035	Missense_Mutation	SNP	T	TCGA-49-6745-01A-11D-1855-08	675125	39581035	131534032	111	127131											
TREM1	54210	broad.mit.edu	37	chr6	41248670	41248670	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagggctcagtgtccaaaCcaggggcccagggacctgga	14	12	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41248670	G	G	41248670	1	3	147	0	1	0	0	0	0	0	0	0	16594	522	18	4		4	TREM1	6	41248670	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	1667635	41248670	129866397	112	127132											
YIPF3	25844	broad.mit.edu	37	chr6	43480052	43480052	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctccagtgtgtccaggatCcctggaaggaagatggaagg	14	10	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43480052	T	T	43480052	2	4	147	1	0	0	0	0	0	0	0	1	17606	869	30	4		4	YIPF3	6	43480052	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	2231382	43480052	127635015	113	127133											
BMP5	653	broad.mit.edu	37	chr6	55623914	55623914	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgctataatccagtcCtgacacatacacacacacac	5	14	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55623914	T	T	55623914	5	4	147	1	0	0	0	0	0	0	1	0	1469	695	24	4	268	4	BMP5	6	55623914	Splice_Site	SNP	C	TCGA-49-6745-01A-11D-1855-08	12143862	55623914	115491153	114	127134											
MTO1	25821	broad.mit.edu	37	chr6	74189769	74189769	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatctacccacaggggttatCtatgacgctaccagctgagt	9	11	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74189769	G	G	74189769	3	3	147	1	0	0	0	0	1	0	0	0	10047	913	32	4	1071	4	MTO1	6	74189769	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	18565855	74189769	96925298	115	127135											
UBE2CBP	90025	broad.mit.edu	37	chr6	83767714	83767714	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatggcattatggaaatattCatgggcatacctccttcttt	8	8	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83767714	T	T	83767714	3	4	147	1	0	0	0	0	1	0	0	0	16973	826	29	4	1100	4	UBE2CBP	6	83767714	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	9577945	83767714	87347353	116	127136											
SNX14	57231	broad.mit.edu	37	chr6	86248583	86248583	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catccaaacttaggctacctCtgcaataacaggtatgtgaa	7	10	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86248583	G	G	86248583	5	3	147	1	0	0	0	0	0	0	1	0	14999	927	32	4	1448	4	SNX14	6	86248583	Splice_Site	SNP	C	TCGA-49-6745-01A-11D-1855-08	2480869	86248583	84866484	117	127137											
SYNCRIP	10492	broad.mit.edu	37	chr6	86325015	86325015	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacctccacgccctcgacctCttgttggagggggcatatga	11	13	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86325015	G	G	86325015	3	3	147	1	0	0	0	0	1	0	0	0	15563	913	32	4	590	4	SYNCRIP	6	86325015	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	76432	86325015	84790052	118	127138											
MDN1	23195	broad.mit.edu	37	chr6	90449994	90449994	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagggttcatggttgctaGaatacgaaattttttcccag	9	9	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90449994	A	A	90449994	2	1	147	1	0	0	0	0	0	0	0	1	9508	933	33	4		4	MDN1	6	90449994	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	4124979	90449994	80665073	119	127139											
BVES	11149	broad.mit.edu	37	chr6	105581342	105581342	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	accagatgatgtatctctctCcagttttcacaagtggtctt	7	10	4	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105581342	G	G	105581342	3	3	147	1	0	0	0	0	1	0	0	0	1585	856	30	4	999	4	BVES	6	105581342	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	15131348	105581342	65533725	120	127140											
SLC35F1	222553	broad.mit.edu	37	chr6	118588406	118588406	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catagttgggtgaaaacaagGaccttaggaacctggatttc	11	7	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118588406	A	A	118588406	1	1	147	0	1	0	0	0	0	0	0	0	14702	1189	41	4		4	SLC35F1	6	118588406	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	13007064	118588406	52526661	121	127141											
UTRN	7402	broad.mit.edu	37	chr6	144780272	144780272	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcctgtgaggatgttcatCttcagtgagttgtgtgaccg	12	8	3	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144780272	G	G	144780272	1	3	147	0	1	0	0	0	0	0	0	0	17230	928	32	4		4	UTRN	6	144780272	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	26191866	144780272	26334795	122	127142											
STXBP5	134957	broad.mit.edu	37	chr6	147703982	147703982	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctggccctggtggcattGaaggcgtaaaaggggcagca	15	9	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147703982	A	A	147703982	3	1	147	1	0	0	0	0	1	0	0	0	15474	1291	45	4	3368	4	STXBP5	6	147703982	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	2923710	147703982	23411085	123	127143											
SYNE1	23345	broad.mit.edu	37	chr6	152746553	152746553	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtaaatctctccatctctCatccaactgctccaaatgta	4	13	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152746553	T	T	152746553	3	4	147	1	0	0	0	0	1	0	0	0	15564	835	29	4	21668	4	SYNE1	6	152746553	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	5042571	152746553	18368514	124	127144											
HEATR2	54919	broad.mit.edu	37	chr7	794181	794181	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaacttgagttgttgaggTtttgcttgtgaatttctcat	11	4	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	794181	G	G	794181	1	3	147	0	1	0	0	0	0	0	0	0	7095	1740	60	5		5	HEATR2	7	794181	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08		794181	158344482	125	127145											
STK31	56164	broad.mit.edu	37	chr7	23872018	23872018	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgttgcagaggttcttttTaaaaactttggtttggttaa	10	3	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23872018	A	A	23872018	1	1	147	0	1	0	0	0	0	0	0	0	15414	1769	61	5		5	STK31	7	23872018	3'UTR	SNP	T	TCGA-49-6745-01A-11D-1855-08	23077837	23872018	135266645	126	127146											
VPS41	27072	broad.mit.edu	37	chr7	38785320	38785320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttttccacagcttcttTaaaaataaaacaaagcaaac	3	8	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38785320	C	C	38785320	1	2	147	0	1	0	0	0	0	0	0	0	17337	1769	61	5		5	VPS41	7	38785320	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	14913302	38785320	120353343	127	127147											
BLVRA	644	broad.mit.edu	37	chr7	43807108	43807108	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttatgctgctattgttgcCgtggtcaccggccatgtggt	12	9	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43807108	T	T	43807108	1	4	147	0	1	0	0	0	0	0	0	0	1457	667	23	4		4	BLVRA	7	43807108	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	5021788	43807108	115331555	128	127148											
PPIA	5478	broad.mit.edu	37	chr7	44836194	44836194	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactctggcgaagtcgcagaCccgattggccgggacggagg	16	12	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44836194	T	T	44836194	1	4	147	0	1	0	0	0	0	0	0	0	12412	522	18	4		4	PPIA	7	44836194	5'Flank	SNP	C	TCGA-49-6745-01A-11D-1855-08	1029086	44836194	114302469	129	127149											
ZPBP	11055	broad.mit.edu	37	chr7	50070765	50070765	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcattcagacttaagtaagGaaatttcacatgaaaggtca	9	6	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50070765	C	C	50070765	3	2	147	1	0	0	0	0	1	0	0	0	18348	1174	41	4	442	4	ZPBP	7	50070765	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	5234571	50070765	109067898	130	127150											
ABHD11	83451	broad.mit.edu	37	chr7	73152108	73152108	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgcgttgatatccccattCtgggggtagacagccaaagg	13	10	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73152108	T	T	73152108	1	4	147	0	1	0	0	0	0	0	0	0	75	928	32	4		4	ABHD11	7	73152108	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	23081343	73152108	85986555	131	127151											
POMZP3	22932	broad.mit.edu	37	chr7	76239578	76239578	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcatcttagtccctaacCgggaactgggttggaggttt	14	8	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76239578	T	T	76239578	1	4	147	0	1	0	0	0	0	0	0	0	12342	667	23	4		4	POMZP3	7	76239578	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	3087470	76239578	82899085	132	127152											
CCDC146	57639	broad.mit.edu	37	chr7	76866367	76866367	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtatgcaatttaccaatatgGagacatgattaatcaccttt	6	7	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76866367	C	C	76866367	1	2	147	0	1	0	0	0	0	0	0	0	2806	1189	41	4		4	CCDC146	7	76866367	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	626789	76866367	82272296	133	127153											
PCLO	27445	broad.mit.edu	37	chr7	82578974	82578974	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatcagggaggggtttttCataaggtacaaaggctgatt	12	5	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82578974	T	T	82578974	3	4	147	1	0	0	0	0	1	0	0	0	11677	835	29	4	4595	4	PCLO	7	82578974	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	5712607	82578974	76559689	134	127154											
SEMA3A	10371	broad.mit.edu	37	chr7	83636683	83636683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttacagttcctggccgtgGataggggactcttccttgat	11	10	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83636683	T	T	83636683	3	4	147	1	0	0	0	0	1	0	0	0	14137	1174	41	3	1221	3	SEMA3A	7	83636683	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	1057709	83636683	75501980	135	127155											
AKAP9	10142	broad.mit.edu	37	chr7	91729097	91729097	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcatatcagtcaactgactGaagagaagaatgacttaagg	11	6	2	5			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91729097	A	A	91729097	3	1	147	1	0	0	0	0	1	0	0	0	459	1291	45	4	10984	4	AKAP9	7	91729097	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	8092414	91729097	67409566	136	127156											
ZKSCAN1	7586	broad.mit.edu	37	chr7	99621184	99621184	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtccccacaggctgcacagGagaaggatggtatcgtaata	12	9	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99621184	A	A	99621184	3	1	147	1	0	0	0	0	1	0	0	0	17812	1175	41	4	57	4	ZKSCAN1	7	99621184	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	7892087	99621184	59517479	137	127157											
EPHB4	2050	broad.mit.edu	37	chr7	100405020	100405020	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggtgggatcggaagagttCtcctccaggaatcgggaaag	15	7	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100405020	T	T	100405020	2	4	147	1	0	0	0	0	0	0	0	1	5219	912	32	4		4	EPHB4	7	100405020	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	783836	100405020	58733643	138	127158											
CDHR3	222256	broad.mit.edu	37	chr7	105662823	105662823	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaagcggaggctcttgttGagacaggaacagtgacactg	14	7	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105662823	C	C	105662823	3	2	147	1	0	0	0	0	1	0	0	0	3150	1291	45	4	2059	4	CDHR3	7	105662823	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	5257803	105662823	53475840	139	127159											
CDHR3	222256	broad.mit.edu	37	chr7	105664964	105664964	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcctattggccaaagccatCcacagacactgcccctgcaa	7	16	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105664964	T	T	105664964	2	4	147	1	0	0	0	0	0	0	0	1	3150	845	30	4		4	CDHR3	7	105664964	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	2141	105664964	53473699	140	127160											
PIK3CG	5294	broad.mit.edu	37	chr7	106523677	106523677	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatatagcagtagtggcttCaagttttcagagaatctgcc	9	7	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106523677	G	G	106523677	1	3	147	0	1	0	0	0	0	0	0	0	12011	841	29	4		4	PIK3CG	7	106523677	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	858713	106523677	52614986	141	127161											
MET	4233	broad.mit.edu	37	chr7	116412044	116412044	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagctacttttccagaagGtatatttcagtttattgttc	7	8	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116412044	T	T	116412044	5	4	147	1	0	0	0	0	0	0	1	0	9578	1275	44	3	3133	3	MET	7	116412044	Splice_Site	SNP	G	TCGA-49-6745-01A-11D-1855-08	9888367	116412044	42726619	142	127162											
CFTR	1080	broad.mit.edu	37	chr7	117234984	117234984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccataattcttttattcagGagtgcttttttgatgatatg	8	5	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117234984	C	C	117234984	3	2	147	1	0	0	0	0	1	0	0	0	3324	1188	41	4	2549	4	CFTR	7	117234984	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	822940	117234984	41903679	143	127163											
CFTR	1080	broad.mit.edu	37	chr7	117235031	117235031	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataccagcagtgactacatgGaacacataccttcgatatat	6	10	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117235031	A	A	117235031	4	1	147	1	0	0	0	0	0	1	0	0	3324	1183	41	4	2596	4	CFTR	7	117235031	Nonsense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	47	117235031	41903632	144	127164											
PODXL	5420	broad.mit.edu	37	chr7	131195564	131195564	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaaagtttcttggtgcttGaagaaaaccaggcattactt	9	6	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131195564	A	A	131195564	1	1	147	0	1	0	0	0	0	0	0	0	12275	1305	45	4		4	PODXL	7	131195564	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	13960533	131195564	27943099	145	127165											
PLXNA4	91584	broad.mit.edu	37	chr7	131815181	131815181	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttggtaaagatgataatcTagactgaggcacggcttggt	12	6	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131815181	G	G	131815181	1	3	147	0	1	0	0	0	0	0	0	0	12217	1537	53	5		5	PLXNA4	7	131815181	3'UTR	SNP	T	TCGA-49-6745-01A-11D-1855-08	619617	131815181	27323482	146	127166											
PLXNA4	91584	broad.mit.edu	37	chr7	131849960	131849960	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcagccactgactcagtcCtgtcagcagtcaccgaggga	10	14	4	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131849960	T	T	131849960	5	4	147	1	0	0	0	0	0	0	1	0	12217	695	24	4	1438	4	PLXNA4	7	131849960	Splice_Site	SNP	C	TCGA-49-6745-01A-11D-1855-08	34779	131849960	27288703	147	127167											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138764365	138764365	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaatttaaggatctggtaGaagttatatctgtggccact	10	5	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138764365	A	A	138764365	3	1	147	1	0	0	0	0	1	0	0	0	17701	942	33	4	1430	4	ZC3HAV1	7	138764365	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	6914405	138764365	20374298	148	127168											
MGAM	8972	broad.mit.edu	37	chr7	141747587	141747587	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatcttgttccccacagtcGaaagaaccctcttggtctta	7	12	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141747587	A	A	141747587	3	1	147	1	0	0	0	0	1	0	0	0	9634	1058	37	4	2583	4	MGAM	7	141747587	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	2983222	141747587	17391076	149	127169											
MGAM	8972	broad.mit.edu	37	chr7	141778732	141778732	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtcttctgttcatgccaAtgccttcccttccacacccg	5	16	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141778732	G	G	141778732	1	3	147	0	1	0	0	0	0	0	0	0	9634	116	4	5		5	MGAM	7	141778732	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	31145	141778732	17359931	150	127170											
TRPV5	56302	broad.mit.edu	37	chr7	142609675	142609675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagagctcatccctctcCtgggccaccctccagtgggt	9	18	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142609675	A	A	142609675	3	1	147	1	0	0	0	0	1	0	0	0	16724	680	24	2	440	2	TRPV5	7	142609675	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	830943	142609675	16528988	151	127171											
OR2A25	392138	broad.mit.edu	37	chr7	143772003	143772003	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctaaagatccagtcaggaGaggggtgccagaaagccttc	12	9	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143772003	A	A	143772003	3	1	147	1	0	0	0	0	1	0	0	0	11072	943	33	4	693	4	OR2A25	7	143772003	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	1162328	143772003	15366660	152	127172											
ZNF398	57541	broad.mit.edu	37	chr7	148863295	148863295	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatctacttttccactccaGagtgggaaaaattagaagaa	7	9	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148863295	A	A	148863295	3	1	147	1	0	0	0	0	1	0	0	0	18012	943	33	4	476	4	ZNF398	7	148863295	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	5091292	148863295	10275368	153	127173											
ZNF398	57541	broad.mit.edu	37	chr7	148876534	148876534	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtaagagcttcatgcgcaagGagcacctgctgaaccaccgg	12	12	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148876534	C	C	148876534	3	2	147	1	0	0	0	0	1	0	0	0	18012	1175	41	4	1592	4	ZNF398	7	148876534	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	13239	148876534	10262129	154	127174											
SSPO	23145	broad.mit.edu	37	chr7	149479935	149479935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcagaccccctgttccagGagctgtgctggtcaatgggc	12	13	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149479935	T	T	149479935	3	4	147	1	0	0	0	0	1	0	0	0	15307	1188	41	3	1957	3	SSPO	7	149479935	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	603401	149479935	9658728	155	127175											
ZNF596	169270	broad.mit.edu	37	chr8	195517	195517	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactggagagaaaccacacGgatgtcatctatgtgggaaa	11	8	2	1	rs145961056	by1000genomes	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195517	T	T	195517	4	4	147	1	0	0	0	0	0	1	0	0	18153	1117	39	1	688	1	ZNF596	8	195517	Nonsense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08		195517	146168505	156	127176											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19362599	19362599	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcacacacataaaactttCcgccagccatcccagagcca	5	16	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19362599	A	A	19362599	1	1	147	0	1	0	0	0	0	0	0	0	3972	870	30	3		3	CSGALNACT1	8	19362599	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	19167082	19362599	127001423	157	127177											
RHOBTB2	23221	broad.mit.edu	37	chr8	22863720	22863720	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcaccatggctccctgctCagccctgggggaattccact	9	17	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22863720	T	T	22863720	1	4	147	0	1	0	0	0	0	0	0	0	13443	841	29	4		4	RHOBTB2	8	22863720	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	3501121	22863720	123500302	158	127178											
MYST3	7994	broad.mit.edu	37	chr8	41791408	41791408	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagtttcctcacagtcctGgtaggcgccctcatgctcac	9	14	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41791408	A	A	41791408	4	1	147	1	0	0	0	0	0	1	0	0	10198	1357	47	4	1688	4	MYST3	8	41791408	Nonsense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	18927688	41791408	104572614	159	127179											
MYST3	7994	broad.mit.edu	37	chr8	41792078	41792078	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctccttcctctcctcGggtaggggcatgtcttcttt	8	15	3	0	rs113809048		TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41792078	T	T	41792078	2	4	147	1	0	0	0	0	0	0	0	1	10198	1103	39	1		1	MYST3	8	41792078	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	670	41792078	104571944	160	127180											
IKBKB	3551	broad.mit.edu	37	chr8	42163879	42163879	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttaatacacaaaattattGacctaggatatgccaaggag	8	6	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42163879	C	C	42163879	3	2	147	1	0	0	0	0	1	0	0	0	7681	1290	45	4	518	4	IKBKB	8	42163879	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	371801	42163879	104200143	161	127181											
FAM110B	90362	broad.mit.edu	37	chr8	59058927	59058927	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggccgagcccaaccccaaGaggctcagcgccgtggagag	14	15	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59058927	A	A	59058927	2	1	147	1	0	0	0	0	0	0	0	1	5443	933	33	4		4	FAM110B	8	59058927	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	16895048	59058927	87305095	162	127182											
CHD7	55636	broad.mit.edu	37	chr8	61754119	61754119	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggaggaatgcacaatatcgGagcaaatacataaacaaaag	9	6	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61754119	C	C	61754119	1	2	147	0	1	0	0	0	0	0	0	0	3361	1189	41	4		4	CHD7	8	61754119	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	2695192	61754119	84609903	163	127183											
CHD7	55636	broad.mit.edu	37	chr8	61754493	61754493	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagctgatggagttctcaGacttggaaagtgattctgaa	12	5	2	5			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61754493	A	A	61754493	3	1	147	1	0	0	0	0	1	0	0	0	3361	942	33	4	4810	4	CHD7	8	61754493	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	374	61754493	84609529	164	127184											
ZFHX4	79776	broad.mit.edu	37	chr8	77616334	77616334	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaattgccatggaaacctGtgactcccctcctatctcaa	6	14	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77616334	A	A	77616334	3	1	147	1	0	0	0	0	1	0	0	0	17761	1377	48	4	13	4	ZFHX4	8	77616334	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	15861841	77616334	68747688	165	127185											
VPS13B	157680	broad.mit.edu	37	chr8	100026130	100026130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggagacgtggtactcagCaagctcgagttaaagttgga	15	6	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100026130	A	A	100026130	3	1	147	1	0	0	0	0	1	0	0	0	17317	709	25	3	116	3	VPS13B	8	100026130	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	22409796	100026130	46337892	166	127186											
UBR5	51366	broad.mit.edu	37	chr8	103300569	103300569	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccactaactatagagaatTtgaaatcatatatcaagcag	6	7	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103300569	C	C	103300569	1	2	147	0	1	0	0	0	0	0	0	0	17031	1856	64	5		5	UBR5	8	103300569	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	3274439	103300569	43063453	167	127187											
ENPP2	5168	broad.mit.edu	37	chr8	120598616	120598616	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaaaaattcttacaaattCtctctctagaaagctgaagg	7	7	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120598616	G	G	120598616	1	3	147	0	1	0	0	0	0	0	0	0	5172	928	32	4		4	ENPP2	8	120598616	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	17298047	120598616	25765406	168	127188											
CYP11B1	1584	broad.mit.edu	37	chr8	143958420	143958420	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggtctctgaggctggatCttcccacgtggcccacacct	11	15	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143958420	A	A	143958420	1	1	147	0	1	0	0	0	0	0	0	0	4178	928	32	3		3	CYP11B1	8	143958420	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	23359804	143958420	2405602	169	127189											
FREM1	158326	broad.mit.edu	37	chr9	14819377	14819377	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtatctgcatcagaaattaGaatgtgctctgtgctgatga	11	6	3	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14819377	A	A	14819377	2	1	147	1	0	0	0	0	0	0	0	1	6104	933	33	4		4	FREM1	9	14819377	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08		14819377	126394054	170	127190											
FREM1	158326	broad.mit.edu	37	chr9	14846098	14846098	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagactcagacctatgaaaGaaaggagaaaagggtgttgg	15	4	1	5			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14846098	C	C	14846098	1	2	147	0	1	0	0	0	0	0	0	0	6104	957	33	4		4	FREM1	9	14846098	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	26721	14846098	126367333	171	127191											
CNTLN	54875	broad.mit.edu	37	chr9	17236494	17236494	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaagaaattaagtaccCgctgcactgacctgctaaat	6	10	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17236494	A	A	17236494	3	1	147	1	0	0	0	0	1	0	0	0	3671	652	23	1	775	1	CNTLN	9	17236494	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	2390396	17236494	123976937	172	127192											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18717987	18717987	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacattaaagcagctgacatGatgactttttgcgagccttc	8	9	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18717987	A	A	18717987	1	1	147	0	1	0	0	0	0	0	0	0	274	1305	45	4		4	ADAMTSL1	9	18717987	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	1481493	18717987	122495444	173	127193											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18777140	18777140	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaagctcgtggcccggccCttgagcccgagaagtgagga	15	13	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18777140	T	T	18777140	2	4	147	1	0	0	0	0	0	0	0	1	274	668	24	4		4	ADAMTSL1	9	18777140	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	59153	18777140	122436291	174	127194											
IFNA2	3440	broad.mit.edu	37	chr9	21384775	21384775	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagttttcattccttacttCttaaactttcttgcaagttt	3	10	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21384775	T	T	21384775	3	4	147	1	0	0	0	0	1	0	0	0	7607	913	32	4	16	4	IFNA2	9	21384775	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	2607635	21384775	119828656	175	127195											
GBA2	57704	broad.mit.edu	37	chr9	35739760	35739760	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcagccaggaagtatagttCattgaacagcgcagatttgt	10	7	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35739760	G	G	35739760	3	3	147	1	0	0	0	0	1	0	0	0	6329	835	29	4	1372	4	GBA2	9	35739760	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	14354985	35739760	105473671	176	127196											
ZNF658	26149	broad.mit.edu	37	chr9	40772608	40772608	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgatgtcttggagaaagtCttcccacagtcattacattc	8	9	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40772608	T	T	40772608	2	4	147	1	0	0	0	0	0	0	0	1	18196	912	32	4		4	ZNF658	9	40772608	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	5032848	40772608	100440823	177	127197											
TRPM6	140803	broad.mit.edu	37	chr9	77377180	77377180	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagcaggtttgccactttttCttgatgctaaacacaccagt	7	10	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77377180	T	T	77377180	2	4	147	1	0	0	0	0	0	0	0	1	16715	912	32	4		4	TRPM6	9	77377180	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	36604572	77377180	63836251	178	127198											
KIF27	55582	broad.mit.edu	37	chr9	86518052	86518052	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagacttgcagtgcctcCgattcctcgaaatgaggtga	10	11	0	3	rs148142223		TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86518052	A	A	86518052	4	1	147	1	0	0	0	0	0	1	0	0	8366	661	23	1	2884	1	KIF27	9	86518052	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	9140872	86518052	54695379	179	127199											
FAM120A	23196	broad.mit.edu	37	chr9	96259777	96259777	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcccaccagctggtcttgCcaccttgcgacgtagtgatc	12	14	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96259777	T	T	96259777	3	4	147	1	0	0	0	0	1	0	0	0	5461	739	26	4	843	4	FAM120A	9	96259777	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	9741725	96259777	44953654	180	127200											
PTCH1	5727	broad.mit.edu	37	chr9	98229610	98229610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcatattctctggtttccCgaggtacaatgtccgtaagg	10	9	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98229610	A	A	98229610	3	1	147	1	0	0	0	0	1	0	0	0	12836	652	23	1	2031	1	PTCH1	9	98229610	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	1969833	98229610	42983821	181	127201											
PTCH1	5727	broad.mit.edu	37	chr9	98279003	98279003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtctttacaaaaggaacGgaaagtgtaaaaaccccggc	9	10	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98279003	T	T	98279003	3	4	147	1	0	0	0	0	1	0	0	0	12836	1116	39	1	4544	1	PTCH1	9	98279003	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	49393	98279003	42934428	182	127202											
ZNF189	7743	broad.mit.edu	37	chr9	104171293	104171293	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctttagtagaagctcaggtCttattcagcatcagagaatt	8	8	4	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104171293	G	G	104171293	3	3	147	1	0	0	0	0	1	0	0	0	17880	913	32	4	1253	4	ZNF189	9	104171293	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	5892290	104171293	37042138	183	127203											
KIAA0368	23392	broad.mit.edu	37	chr9	114204752	114204752	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgaaggaaatactctatGatttcaatgaaaatatatga	8	3	2	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114204752	C	C	114204752	1	2	147	0	1	0	0	0	0	0	0	0	8241	1305	45	4		4	KIAA0368	9	114204752	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	10033459	114204752	27008679	184	127204											
SNX30	401548	broad.mit.edu	37	chr9	115566941	115566941	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggagaggctcaggtgtttCgaaagttatttttgggtttt	14	3	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115566941	T	T	115566941	1	4	147	0	1	0	0	0	0	0	0	0	15014	899	31	4		4	SNX30	9	115566941	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	1362189	115566941	25646490	185	127205											
C9orf91	203197	broad.mit.edu	37	chr9	117405359	117405359	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctggtgcctaagcccTttttcctcaaggggctcccc	8	17	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117405359	C	C	117405359	1	2	147	0	1	0	0	0	0	0	0	0	2531	1624	56	5		5	C9orf91	9	117405359	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	1838418	117405359	23808072	186	127206											
CEP110	11064	broad.mit.edu	37	chr9	123860619	123860619	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctttaagtatgttatgAtttttaaattaaattatacc	3	5	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123860619	G	G	123860619	1	3	147	0	1	0	0	0	0	0	0	0	3275	348	12	5		5	CEP110	9	123860619	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	6455260	123860619	17352812	187	127207											
CEP110	11064	broad.mit.edu	37	chr9	123917162	123917162	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accgactcctggcagaggctGagagtgaactttcatgcact	11	11	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123917162	A	A	123917162	3	1	147	1	0	0	0	0	1	0	0	0	3275	1291	45	4	4434	4	CEP110	9	123917162	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	56543	123917162	17296269	188	127208											
ODF2	4957	broad.mit.edu	37	chr9	131219695	131219695	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgcctagccatgtctgcctCatcctcaggcggctccccca	8	18	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131219695	T	T	131219695	3	4	147	1	0	0	0	0	1	0	0	0	10922	838	29	4	13	4	ODF2	9	131219695	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	7302533	131219695	9993736	189	127209											
FAM73B	84895	broad.mit.edu	37	chr9	131810777	131810777	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagtggcatctcttccattGagcccagcaagcactcgggc	11	13	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131810777	C	C	131810777	3	2	147	1	0	0	0	0	1	0	0	0	5669	1291	45	4	389	4	FAM73B	9	131810777	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	591082	131810777	9402654	190	127210											
COL5A1	1289	broad.mit.edu	37	chr9	137696929	137696929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgagtgagaggccaggcGgggaatgaaatgggacaggt	20	4	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137696929	T	T	137696929	1	4	147	0	1	0	0	0	0	0	0	0	3728	1131	39	1		1	COL5A1	9	137696929	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	5886152	137696929	3516502	191	127211											
QSOX2	169714	broad.mit.edu	37	chr9	139110715	139110715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctccacagcaagtctccCtgtcctggctcctccccacg	6	21	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139110715	A	A	139110715	1	1	147	0	1	0	0	0	0	0	0	0	12992	696	24	2		2	QSOX2	9	139110715	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	1413786	139110715	2102716	192	127212											
AKR1C3	8644	broad.mit.edu	37	chr10	5138718	5138718	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttggactggccatccgaagCaagattgcagatggcagtgt	14	8	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5138718	G	G	5138718	1	3	147	0	1	0	0	0	0	0	0	0	471	709	25	4		4	AKR1C3	10	5138718	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08		5138718	130396029	193	127213											
ITIH5	80760	broad.mit.edu	37	chr10	7658063	7658063	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaatagccatttagaaccTggtggagggaaaagaaagta	11	5	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7658063	C	C	7658063	5	2	147	1	0	0	0	0	0	0	1	0	7977	1594	55	5	2162	5	ITIH5	10	7658063	Splice_Site	SNP	T	TCGA-49-6745-01A-11D-1855-08	2519345	7658063	127876684	194	127214											
ANKRD26	22852	broad.mit.edu	37	chr10	27382712	27382712	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggatgaccattggcacaggCcaaatgtagagccgtcctat	11	10	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27382712	G	G	27382712	3	3	147	1	0	0	0	0	1	0	0	0	654	739	26	4	5005	4	ANKRD26	10	27382712	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	19724649	27382712	108152035	195	127215											
ARMC4	55130	broad.mit.edu	37	chr10	28229387	28229387	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctcatagaatgctgacttCtagaaaaagaatgtccttga	7	7	2	5			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28229387	T	T	28229387	1	4	147	0	1	0	0	0	0	0	0	0	957	928	32	4		4	ARMC4	10	28229387	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	846675	28229387	107305360	196	127216											
MAP3K8	1326	broad.mit.edu	37	chr10	30740626	30740626	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggattttggcctaagtgttCaaatgaccgaagatgtctat	10	6	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30740626	T	T	30740626	4	4	147	1	0	0	0	0	0	1	0	0	9348	827	29	4	840	4	MAP3K8	10	30740626	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	2511239	30740626	104794121	197	127217											
RET	5979	broad.mit.edu	37	chr10	43615593	43615593	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggcggaagatgaagatttCggatttcggcttgtcccgag	16	7	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43615593	A	A	43615593	4	1	147	1	0	0	0	0	0	1	0	0	13343	893	31	3	2730	3	RET	10	43615593	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	12874967	43615593	91919154	198	127218											
GDF10	2662	broad.mit.edu	37	chr10	48429252	48429252	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgccatcccggcgggccgCcttgacgatgggggagatgt	16	13	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48429252	T	T	48429252	3	4	147	1	0	0	0	0	1	0	0	0	6375	739	26	4	810	4	GDF10	10	48429252	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	4813659	48429252	87105495	199	127219											
TSPAN15	23555	broad.mit.edu	37	chr10	71265912	71265912	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatgtcatctacgtgcgGggctgcaccaacgccgtgat	13	12	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71265912	T	T	71265912	2	4	147	1	0	0	0	0	0	0	0	1	16764	1219	43	2		2	TSPAN15	10	71265912	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	22836660	71265912	64268835	200	127220											
ZMYND17	118490	broad.mit.edu	37	chr10	75185435	75185435	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctcaaaaaaaaaaaaagaAaaaaaaaaaaagaaaagttg	5	2	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75185435	G	G	75185435	1	3	147	0	1	0	0	0	0	0	0	0	17835	29	1	5		5	ZMYND17	10	75185435	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	3919523	75185435	60349312	201	127221											
ZMIZ1	57178	broad.mit.edu	37	chr10	81037046	81037046	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccatgcagccccctctcaGctccatgagctccatgaaac	6	19	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81037046	A	A	81037046	3	1	147	1	0	0	0	0	1	0	0	0	17822	971	34	4	403	4	ZMIZ1	10	81037046	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	5851611	81037046	54497701	202	127222											
RPP30	10556	broad.mit.edu	37	chr10	92655181	92655181	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttttttacatttatctaaGattaatattagtcactttct	2	6	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92655181	C	C	92655181	1	2	147	0	1	0	0	0	0	0	0	0	13723	957	33	4		4	RPP30	10	92655181	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	11618135	92655181	42879566	203	127223											
SEC31B	25956	broad.mit.edu	37	chr10	102269109	102269109	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgagggctctgacagccccCgtgtgcttctgtttctgagc	12	13	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102269109	A	A	102269109	2	1	147	1	0	0	0	0	0	0	0	1	14112	639	23	1		1	SEC31B	10	102269109	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	9613928	102269109	33265638	204	127224											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105361458	105361458	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattctgcagtgttgaatgTtgtccaccccccacccccca	6	18	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105361458	C	C	105361458	1	2	147	0	1	0	0	0	0	0	0	0	14369	1740	60	5		5	SH3PXD2A	10	105361458	3'UTR	SNP	T	TCGA-49-6745-01A-11D-1855-08	3092349	105361458	30173289	205	127225											
SLK	9748	broad.mit.edu	37	chr10	105727608	105727608	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaccccgaagacttttgggaGattataggagaactgggcga	13	7	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105727608	C	C	105727608	3	2	147	1	0	0	0	0	1	0	0	0	14862	933	33	4	107	4	SLK	10	105727608	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	366150	105727608	29807139	206	127226											
CCDC147	159686	broad.mit.edu	37	chr10	106125541	106125541	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccatggtcagggctcatctCtttctctcttgtcctttccg	8	14	5	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106125541	G	G	106125541	1	3	147	0	1	0	0	0	0	0	0	0	2807	928	32	4		4	CCDC147	10	106125541	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	397933	106125541	29409206	207	127227											
ACSL5	51703	broad.mit.edu	37	chr10	114173112	114173112	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtgacttgggcctgcacGaaggaactctgtactactat	10	10	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114173112	A	A	114173112	1	1	147	0	1	0	0	0	0	0	0	0	180	1073	37	4		4	ACSL5	10	114173112	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	8047571	114173112	21361635	208	127228											
C10orf118	55088	broad.mit.edu	37	chr10	115897055	115897055	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatctttggtttcctgcaTtgacaaaagacagagacaca	7	8	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115897055	A	A	115897055	1	1	147	0	1	0	0	0	0	0	0	0	1598	1508	52	5		5	C10orf118	10	115897055	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	1723943	115897055	19637692	209	127229											
FGFR2	2263	broad.mit.edu	37	chr10	123260219	123260219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataccgaaaacttctcaaccCctaggtcaactatgtgctct	5	13	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123260219	A	A	123260219	1	1	147	0	1	0	0	0	0	0	0	0	5923	638	22	2		2	FGFR2	10	123260219	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	7363164	123260219	12274528	210	127230											
HTRA1	5654	broad.mit.edu	37	chr10	124248444	124248444	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatcccaacagtttgcgcCataaatataactttatcgcg	6	10	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124248444	T	T	124248444	3	4	147	1	0	0	0	0	1	0	0	0	7523	594	21	4	505	4	HTRA1	10	124248444	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	988225	124248444	11286303	211	127231											
SMPD1	6609	broad.mit.edu	37	chr11	6413070	6413070	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgacctgcccctgaggaccCtggagagcctgttgagtggg	16	11	0	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6413070	G	G	6413070	3	3	147	1	0	0	0	0	1	0	0	0	14918	680	24	4	781	4	SMPD1	11	6413070	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08		6413070	128593446	212	127232											
MICAL2	9645	broad.mit.edu	37	chr11	12241745	12241745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatgttttcatcttcccCaggactacatcgacacagag	6	14	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12241745	A	A	12241745	1	1	147	0	1	0	0	0	0	0	0	0	9663	609	21	2		2	MICAL2	11	12241745	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	5828675	12241745	122764771	213	127233											
ABCC8	6833	broad.mit.edu	37	chr11	17419207	17419207	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctggtgtctgacccctcctCtgccctagcccactgccgct	9	19	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17419207	G	G	17419207	1	3	147	0	1	0	0	0	0	0	0	0	58	928	32	4		4	ABCC8	11	17419207	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	5177462	17419207	117587309	214	127234											
E2F8	79733	broad.mit.edu	37	chr11	19259358	19259358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaacctcccccctccccCcaacaaattccccagcctcc	1	25	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19259358	A	A	19259358	1	1	147	0	1	0	0	0	0	0	0	0	4913	638	22	2		2	E2F8	11	19259358	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	1840151	19259358	115747158	215	127235											
DBX1	120237	broad.mit.edu	37	chr11	20178619	20178619	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccagcttggccgccagcttCttgcggtcgggcttgctgat	13	14	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20178619	G	G	20178619	3	3	147	1	0	0	0	0	1	0	0	0	4292	912	32	4	520	4	DBX1	11	20178619	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	919261	20178619	114827897	216	127236											
CD44	960	broad.mit.edu	37	chr11	35222564	35222564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagaagcaagactatgtgCgggacaagtggcgaaggctc	14	8	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35222564	T	T	35222564	1	4	147	0	1	0	0	0	0	0	0	0	3047	783	27	4		4	CD44	11	35222564	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	15043945	35222564	99783952	217	127237											
C11orf49	79096	broad.mit.edu	37	chr11	46958352	46958352	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttgaagccaccccggtcAaaggatgctgagtccggagc	13	12	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46958352	G	G	46958352	1	3	147	0	1	0	0	0	0	0	0	0	1657	145	5	5		5	C11orf49	11	46958352	5'UTR	SNP	A	TCGA-49-6745-01A-11D-1855-08	11735788	46958352	88048164	218	127238											
MADD	8567	broad.mit.edu	37	chr11	47297312	47297312	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatatactttccggtcctatCtgagctcagagactgggctt	9	10	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47297312	G	G	47297312	1	3	147	0	1	0	0	0	0	0	0	0	9240	928	32	4		4	MADD	11	47297312	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	338960	47297312	87709204	219	127239											
MADD	8567	broad.mit.edu	37	chr11	47298228	47298228	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaatgttggaagctgttttCttgtaaaccatattttatgt	8	4	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47298228	G	G	47298228	1	3	147	0	1	0	0	0	0	0	0	0	9240	928	32	4		4	MADD	11	47298228	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	916	47298228	87708288	220	127240											
SPRYD5	84767	broad.mit.edu	37	chr11	55658753	55658753	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtatggggggctcaggCtttcacatctggcaaatatt	11	8	4	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55658753	G	G	55658753	3	3	147	1	0	0	0	0	1	0	0	0	15229	797	28	4	1026	4	SPRYD5	11	55658753	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	8360525	55658753	79347763	221	127241											
ZFP91	80829	broad.mit.edu	37	chr11	58352374	58352374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtaagacttggtcatcCttacctctagcgtacattac	7	10	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58352374	A	A	58352374	1	1	147	0	1	0	0	0	0	0	0	0	17781	696	24	2		2	ZFP91	11	58352374	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	2693621	58352374	76654142	222	127242											
CAPN1	823	broad.mit.edu	37	chr11	64956054	64956054	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacctgtgtacctcccacctCaggatgtcattccgagactt	7	15	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64956054	T	T	64956054	1	4	147	0	1	0	0	0	0	0	0	0	2648	841	29	4		4	CAPN1	11	64956054	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	6603680	64956054	70050462	223	127243											
SPTBN2	6712	broad.mit.edu	37	chr11	66476298	66476298	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggtcgacatggccccGggtttggggatgtgtgcaag	18	7	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66476298	C	C	66476298	1	2	147	0	1	0	0	0	0	0	0	0	15238	1131	39	4		4	SPTBN2	11	66476298	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	1520244	66476298	68530218	224	127244											
PC	5091	broad.mit.edu	37	chr11	66631478	66631478	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagaaactgcggtcaaaaGtgccccacccaccccgaggc	10	17	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66631478	C	C	66631478	1	2	147	0	1	0	0	0	0	0	0	0	11591	1044	36	4		4	PC	11	66631478	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	155180	66631478	68375038	225	127245											
ORAOV1	220064	broad.mit.edu	37	chr11	69487950	69487950	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattataaattgtaaatgaaGaggcttcatctccagatggg	9	5	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69487950	C	C	69487950	1	2	147	0	1	0	0	0	0	0	0	0	11354	957	33	4		4	ORAOV1	11	69487950	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	2856472	69487950	65518566	226	127246											
DLG2	1740	broad.mit.edu	37	chr11	83501840	83501840	+	Intron	SNP	G	A	A													gactctcatcttcggggaaaGagcgccctcccacttgagaa							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83501840	A	A	83501840	1	1	147	0	1	0	0	0	0	0	0	0	4595	957	33	4		4	DLG2	11	83501840	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	14013890	83501840	51504676	227	127247	551	2									
DLG2	1740	broad.mit.edu	37	chr11	83501842	83501843	+	Intron	DNP	GC	AA	AA													ctctcatcttcggggaaagaGcgccctcccacttgagaagg							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	83501843	AA	AA	83501842	1	1	147	0	1	0	0	0	0	0	0	0	4595	986	34	4		4	DLG2	11	83501842	Intron	DNP	GC	TCGA-49-6745-01A-11D-1855-08	2	83501842	51504674	228	127248	551	2									
CNTN5	53942	broad.mit.edu	37	chr11	100211995	100211995	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccgaaattgttattatgaaGatggaaaattaataaggcat	8	3	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100211995	C	C	100211995	1	2	147	0	1	0	0	0	0	0	0	0	3676	957	33	4		4	CNTN5	11	100211995	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	16710153	100211995	34794521	229	127249											
DDI1	414301	broad.mit.edu	37	chr11	103907482	103907482	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagcggcaccaacgacgCaggcccgccccagcccgcca	12	20	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103907482	A	A	103907482	1	1	147	0	1	0	0	0	0	0	0	0	4361	725	25	3		3	DDI1	11	103907482	5'UTR	SNP	C	TCGA-49-6745-01A-11D-1855-08	3695487	103907482	31099034	230	127250											
SRPR	6734	broad.mit.edu	37	chr11	126135202	126135202	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccccactccattaacgccGcagaaggtgacgacataagg	9	13	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126135202	A	A	126135202	2	1	147	1	0	0	0	0	0	0	0	1	15280	1079	38	4		4	SRPR	11	126135202	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	22227720	126135202	8871314	231	127251											
TMEM45B	120224	broad.mit.edu	37	chr11	129724602	129724602	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattggcagcacagcaccatGtacctattctttgcagtctc	7	12	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129724602	A	A	129724602	3	1	147	1	0	0	0	0	1	0	0	0	16293	1377	48	4	282	4	TMEM45B	11	129724602	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	3589400	129724602	5281914	232	127252											
TPI1	7167	broad.mit.edu	37	chr12	6976727	6976727	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcagcgcctcggctccagCgccatggcgccctccaggaa	11	18	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6976727	T	T	6976727	1	4	147	0	1	0	0	0	0	0	0	0	16527	767	27	4		4	TPI1	12	6976727	5'UTR	SNP	C	TCGA-49-6745-01A-11D-1855-08		6976727	126875168	233	127253											
PHB2	11331	broad.mit.edu	37	chr12	7076633	7076633	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaaggccaccaatgctattGatctggccttacagtgggga	12	10	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7076633	C	C	7076633	1	2	147	0	1	0	0	0	0	0	0	0	11910	1305	45	4		4	PHB2	12	7076633	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	99906	7076633	126775262	234	127254											
RBP5	83758	broad.mit.edu	37	chr12	7281084	7281084	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgcctgcagcagcccctCagggctgtgagtttcccttc	10	16	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7281084	T	T	7281084	1	4	147	0	1	0	0	0	0	0	0	0	13267	841	29	4		4	RBP5	12	7281084	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	204451	7281084	126570811	235	127255											
RERGL	79785	broad.mit.edu	37	chr12	18234236	18234236	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtttatcaggatgtccttGataattctgataaacatcat	6	6	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18234236	C	C	18234236	3	2	147	1	0	0	0	0	1	0	0	0	13341	1280	45	4	114	4	RERGL	12	18234236	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	10953152	18234236	115617659	236	127256											
SLCO1B1	10599	broad.mit.edu	37	chr12	21349967	21349967	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggactattctccattatttCttccataccattctttttct	2	11	4	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21349967	G	G	21349967	3	3	147	1	0	0	0	0	1	0	0	0	14837	913	32	4	841	4	SLCO1B1	12	21349967	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	3115731	21349967	112501928	237	127257											
IAPP	3375	broad.mit.edu	37	chr12	21526328	21526328	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttctcattgtgctctctGttgcattgaaccatctgaaa	6	9	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21526328	A	A	21526328	3	1	147	1	0	0	0	0	1	0	0	0	7542	1377	48	4	45	4	IAPP	12	21526328	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	176361	21526328	112325567	238	127258											
ABCC9	10060	broad.mit.edu	37	chr12	22063977	22063977	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagaccaggtgtacagttTgcatttattaaaagatacat	7	5	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22063977	C	C	22063977	1	2	147	0	1	0	0	0	0	0	0	0	59	1827	63	5		5	ABCC9	12	22063977	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	537649	22063977	111787918	239	127259											
KIAA0528	9847	broad.mit.edu	37	chr12	22623922	22623922	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttacatatttttttcagtaCcacggaacaacctacaccaa	3	12	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22623922	G	G	22623922	1	3	147	0	1	0	0	0	0	0	0	0	8252	522	18	4		4	KIAA0528	12	22623922	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	559945	22623922	111227973	240	127260											
ITPR2	3709	broad.mit.edu	37	chr12	26629850	26629850	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaaagttttcttaccagttCtctgggtctcatgttaaaaa	6	7	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26629850	G	G	26629850	3	3	147	1	0	0	0	0	1	0	0	0	7991	922	32	4	1947	4	ITPR2	12	26629850	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	4005928	26629850	107222045	241	127261											
C12orf11	55726	broad.mit.edu	37	chr12	27064257	27064257	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agattccttttaatcttttaGagggacaaataatgaaatgt	7	4	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27064257	C	C	27064257	1	2	147	0	1	0	0	0	0	0	0	0	1688	957	33	4		4	C12orf11	12	27064257	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	434407	27064257	106787638	242	127262											
PPFIBP1	8496	broad.mit.edu	37	chr12	27834472	27834472	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcatgcaattactcattttCctgtagtgacttggatatgc	7	8	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27834472	T	T	27834472	1	4	147	0	1	0	0	0	0	0	0	0	12409	870	30	4		4	PPFIBP1	12	27834472	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	770215	27834472	106017423	243	127263											
ABCD2	225	broad.mit.edu	37	chr12	40012767	40012767	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtgagccacagattgggaGaacatcataatatcctccgt	9	9	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40012767	T	T	40012767	3	4	147	1	0	0	0	0	1	0	0	0	61	933	33	3	1611	3	ABCD2	12	40012767	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	12178295	40012767	93839128	244	127264											
LRRK2	120892	broad.mit.edu	37	chr12	40734215	40734215	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactacggcattgctcagtActgctgtagaatggggataa	12	7	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40734215	G	G	40734215	3	3	147	1	0	0	0	0	1	0	0	0	9120	391	14	5	6230	5	LRRK2	12	40734215	Missense_Mutation	SNP	A	TCGA-49-6745-01A-11D-1855-08	721448	40734215	93117680	245	127265											
CNTN1	1272	broad.mit.edu	37	chr12	41463834	41463834	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccttgtctacttggaattCtgaatgtgttgtgacagctg	10	7	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41463834	T	T	41463834	2	4	147	1	0	0	0	0	0	0	0	1	3672	912	32	4		4	CNTN1	12	41463834	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	729619	41463834	92388061	246	127266											
C12orf41	54934	broad.mit.edu	37	chr12	49061600	49061600	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaaaagacagataaaataGacccacaaaagaacacacaa	6	8	0	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49061600	A	A	49061600	1	1	147	0	1	0	0	0	0	0	0	0	1700	957	33	4		4	C12orf41	12	49061600	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	7597766	49061600	84790295	247	127267											
DHH	50846	broad.mit.edu	37	chr12	49485111	49485111	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctcagtcactcgtaggCgcactccgggccacatgttc	10	16	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49485111	T	T	49485111	3	4	147	1	0	0	0	0	1	0	0	0	4523	768	27	4	833	4	DHH	12	49485111	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	423511	49485111	84366784	248	127268											
ACCN2	41	broad.mit.edu	37	chr12	50472895	50472895	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcaccctctcttgtgtctGacattaaagctgagaatggt	9	10	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50472895	C	C	50472895	1	2	147	0	1	0	0	0	0	0	0	0	129	1305	45	4		4	ACCN2	12	50472895	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	987784	50472895	83379000	249	127269											
BIN2	51411	broad.mit.edu	37	chr12	51689741	51689741	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccttctcccctccccttcaGacagcttcccaaaataaaac	2	19	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51689741	C	C	51689741	1	2	147	0	1	0	0	0	0	0	0	0	1439	957	33	4		4	BIN2	12	51689741	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	1216846	51689741	82162154	250	127270											
KRT82	3888	broad.mit.edu	37	chr12	52793813	52793813	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggctttgctgcggctggCgatgtcgtcatactgcgcct	13	12	1	0	rs143454001	byFrequency	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52793813	T	T	52793813	3	4	147	1	0	0	0	0	1	0	0	0	8567	768	27	4	663	4	KRT82	12	52793813	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	1104072	52793813	81058082	251	127271											
SP1	6667	broad.mit.edu	37	chr12	53774039	53774039	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggccccccccaacccccccgGacaggacccccttgagcttg	9	22	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53774039	C	C	53774039	1	2	147	0	1	0	0	0	0	0	0	0	15073	1189	41	4		4	SP1	12	53774039	5'UTR	SNP	G	TCGA-49-6745-01A-11D-1855-08	980226	53774039	80077856	252	127272											
OR6C68	403284	broad.mit.edu	37	chr12	55886877	55886877	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaagccttttctacctGttcttcacatattactgtgg	6	9	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55886877	A	A	55886877	3	1	147	1	0	0	0	0	1	0	0	0	11290	1377	48	4	733	4	OR6C68	12	55886877	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	2112838	55886877	77965018	253	127273											
SLC39A5	283375	broad.mit.edu	37	chr12	56630228	56630228	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgaaacacgcaacttggatCcggagaatggcagtgggatg	14	8	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56630228	T	T	56630228	3	4	147	1	0	0	0	0	1	0	0	0	14735	855	30	4	1016	4	SLC39A5	12	56630228	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	743351	56630228	77221667	254	127274											
NACA	4666	broad.mit.edu	37	chr12	57118314	57118315	+	5'UTR	DNP	GA	AC	AC													ttcgccgggcatttctgaagGaagggaataaaaaggaggcc							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	57118315	AC	AC	57118314	1	1	147	0	1	0	0	0	0	0	0	0	10227	1189	41	4		4	NACA	12	57118314	5'UTR	DNP	GA	TCGA-49-6745-01A-11D-1855-08	488086	57118314	76733581	255	127275											
GEFT	115557	broad.mit.edu	37	chr12	58007142	58007142	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctggagataagacgcaGgtgtgaggacaggctctggg	18	8	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58007142	A	A	58007142	2	1	147	1	0	0	0	0	0	0	0	1	6392	1014	35	4		4	GEFT	12	58007142	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	888828	58007142	75844753	256	127276			1	98		4	4	249	G		4.175587e-09
GEFT	115557	broad.mit.edu	37	chr12	58007205	58007205	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattcgtttgctcaccctagGatgttctttccttccagcca	6	14	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58007205	A	A	58007205	1	1	147	0	1	0	0	0	0	0	0	0	6392	1189	41	4		4	GEFT	12	58007205	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	63	58007205	75844690	257	127277			1	98		4	4	249	G		4.175587e-09
GEFT	115557	broad.mit.edu	37	chr12	58007229	58007229	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctttccttccagccacctGaagaggagactttgtcccaa	7	13	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58007229	T	T	58007229	4	4	147	1	0	0	0	0	0	1	0	0	6392	1291	45	3	651	3	GEFT	12	58007229	Nonsense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	24	58007229	75844666	258	127278			1	98		4	4	249	G		4.175587e-09
GEFT	115557	broad.mit.edu	37	chr12	58007390	58007390	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcctccaaggttggctatGatgataaaggggaggaggga	15	5	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58007390	A	A	58007390	1	1	147	0	1	0	0	0	0	0	0	0	6392	1305	45	4		4	GEFT	12	58007390	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	161	58007390	75844505	259	127279			1	98		4	4	249	G		4.175587e-09
TSPAN31	6302	broad.mit.edu	37	chr12	58140859	58140859	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaaagtttcttaagcattCagacgaagccctgaaaatcc	7	9	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58140859	T	T	58140859	3	4	147	1	0	0	0	0	1	0	0	0	16771	838	29	4	521	4	TSPAN31	12	58140859	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	133469	58140859	75711036	260	127280											
TSPAN31	6302	broad.mit.edu	37	chr12	58140935	58140935	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaacattctccagttccctCacacacatcctttttgagac	4	14	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58140935	T	T	58140935	1	4	147	0	1	0	0	0	0	0	0	0	16771	841	29	4		4	TSPAN31	12	58140935	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	76	58140935	75710960	261	127281											
GRIP1	23426	broad.mit.edu	37	chr12	66786312	66786312	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggaaaggagtttaagtatCagagtaaatttaaataaaaa	8	2	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66786312	T	T	66786312	1	4	147	0	1	0	0	0	0	0	0	0	6853	841	29	4		4	GRIP1	12	66786312	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	8645377	66786312	67065583	262	127282											
LGR5	8549	broad.mit.edu	37	chr12	71977945	71977945	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctgcctttgccttttgggGagcccagcaccatgggctac	12	14	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71977945	A	A	71977945	3	1	147	1	0	0	0	0	1	0	0	0	8829	1175	41	4	2225	4	LGR5	12	71977945	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	5191633	71977945	61873950	263	127283											
ZFC3H1	196441	broad.mit.edu	37	chr12	72024571	72024571	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcaaacaagaccatttttCaaattacaaaatgttcacaa	3	8	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72024571	G	G	72024571	1	3	147	0	1	0	0	0	0	0	0	0	17759	841	29	4		4	ZFC3H1	12	72024571	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	46626	72024571	61827324	264	127284											
ZFC3H1	196441	broad.mit.edu	37	chr12	72036494	72036494	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgggaaattcaattcaaatGataggtacactggttgacat	9	5	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72036494	C	C	72036494	1	2	147	0	1	0	0	0	0	0	0	0	17759	1305	45	4		4	ZFC3H1	12	72036494	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	11923	72036494	61815401	265	127285											
ZFC3H1	196441	broad.mit.edu	37	chr12	72041447	72041447	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaataagtgaaagtaagataGacttcccttacaaaagaaca	6	6	0	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72041447	A	A	72041447	1	1	147	0	1	0	0	0	0	0	0	0	17759	957	33	4		4	ZFC3H1	12	72041447	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	4953	72041447	61810448	266	127286											
CAPS2	84698	broad.mit.edu	37	chr12	75672620	75672620	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatcctttacattgatatCatctctccaataaaatgctt	2	10	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75672620	G	G	75672620	1	3	147	0	1	0	0	0	0	0	0	0	2664	841	29	4		4	CAPS2	12	75672620	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	3631173	75672620	58179275	267	127287											
UTP20	27340	broad.mit.edu	37	chr12	101705807	101705807	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttatgacaactttctttCttgcagagaaggaactacag	9	7	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101705807	T	T	101705807	1	4	147	0	1	0	0	0	0	0	0	0	17226	928	32	4		4	UTP20	12	101705807	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	26033187	101705807	32146088	268	127288											
MYBPC1	4604	broad.mit.edu	37	chr12	102036190	102036190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactagaccatggttctcccCggttagggaggtgaagcagc	13	10	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102036190	A	A	102036190	1	1	147	0	1	0	0	0	0	0	0	0	10105	667	23	1		1	MYBPC1	12	102036190	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	330383	102036190	31815705	269	127289											
NAA25	80018	broad.mit.edu	37	chr12	112512597	112512597	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agattgaatgatgcacacagGattaaacccaagttgtgaca	9	7	0	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112512597	C	C	112512597	1	2	147	0	1	0	0	0	0	0	0	0	10215	1189	41	4		4	NAA25	12	112512597	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	10476407	112512597	21339298	270	127290											
SNRNP35	11066	broad.mit.edu	37	chr12	123950180	123950180	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacccacacgaccgcgcggtCtggagggcaatgctggcacg	15	14	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123950180	T	T	123950180	2	4	147	1	0	0	0	0	0	0	0	1	14969	900	32	4		4	SNRNP35	12	123950180	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	11437583	123950180	9901715	271	127291											
PSPC1	55269	broad.mit.edu	37	chr13	20356445	20356445	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggttgagacagcgtcctagGacgaggctggcctcagcccc	14	13	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20356445	T	T	20356445	1	4	147	0	1	0	0	0	0	0	0	0	12822	1189	41	3		3	PSPC1	13	20356445	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08		20356445	94813433	272	127292											
NAA16	79612	broad.mit.edu	37	chr13	41941661	41941661	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtgcctatgttgaccttttGagattagaagatatactcag	9	7	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41941661	C	C	41941661	3	2	147	1	0	0	0	0	1	0	0	0	10213	1281	45	4	1713	4	NAA16	13	41941661	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	21585216	41941661	73228217	273	127293											
NALCN	259232	broad.mit.edu	37	chr13	101756652	101756652	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaaagacttacaagataTataaatatgtccattactcc	4	8	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101756652	C	C	101756652	3	2	147	1	0	0	0	0	1	0	0	0	10242	1396	49	5	2413	5	NALCN	13	101756652	Missense_Mutation	SNP	T	TCGA-49-6745-01A-11D-1855-08	59814991	101756652	13413226	274	127294											
COL4A2	1284	broad.mit.edu	37	chr13	111088678	111088678	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accctccaccccatcatcgcGcccacaggagtcaccttcca	5	21	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111088678	A	A	111088678	2	1	147	1	0	0	0	0	0	0	0	1	3722	1074	38	4		4	COL4A2	13	111088678	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	9332026	111088678	4081200	275	127295											
CARKD	55739	broad.mit.edu	37	chr13	111290626	111290626	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattgacaatttggggtcctGagattgaaacaggagtcaaa	11	5	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111290626	C	C	111290626	1	2	147	0	1	0	0	0	0	0	0	0	2680	1291	45	4		4	CARKD	13	111290626	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	201948	111290626	3879252	276	127296											
CHD8	57680	broad.mit.edu	37	chr14	21870611	21870611	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaattacgagtgatgaggcGgtacaccttcacagctttgc	12	9	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21870611	A	A	21870611	3	1	147	1	0	0	0	0	1	0	0	0	3362	1116	39	4	4059	4	CHD8	14	21870611	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08		21870611	85478929	277	127297											
ACIN1	22985	broad.mit.edu	37	chr14	23562715	23562715	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggctggaatgcagcatgGggtgttgagtgtttctgtaa	15	4	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23562715	T	T	23562715	2	4	147	1	0	0	0	0	0	0	0	1	142	1219	43	2		2	ACIN1	14	23562715	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	1692104	23562715	83786825	278	127298											
LRRC16B	90668	broad.mit.edu	37	chr14	24525001	24525001	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caacgccgggcttaagacgtGaggccagtctcctccttggg	13	13	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24525001	A	A	24525001	1	1	147	0	1	0	0	0	0	0	0	0	9059	1305	45	4		4	LRRC16B	14	24525001	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	962286	24525001	82824539	279	127299											
REC8	9985	broad.mit.edu	37	chr14	24644861	24644861	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagaaccttctttctggtGagaggcataggcaggcccaa	13	9	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24644861	A	A	24644861	1	1	147	0	1	0	0	0	0	0	0	0	13307	1305	45	4		4	REC8	14	24644861	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	119860	24644861	82704679	280	127300											
C14orf21	161424	broad.mit.edu	37	chr14	24773551	24773551	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatatgagctttccctggActgtaccttcagactcaaaa	7	10	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24773551	C	C	24773551	1	2	147	0	1	0	0	0	0	0	0	0	1782	290	10	5		5	C14orf21	14	24773551	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	128690	24773551	82575989	281	127301											
FERMT2	10979	broad.mit.edu	37	chr14	53331254	53331254	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaggaaagaatattctgAacttctaagttgtaagaact	8	4	2	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53331254	C	C	53331254	2	2	147	1	0	0	0	0	0	0	0	1	5875	233	9	5		5	FERMT2	14	53331254	Silent	SNP	A	TCGA-49-6745-01A-11D-1855-08	28557703	53331254	54018286	282	127302											
C14orf101	54916	broad.mit.edu	37	chr14	57085303	57085303	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacccactggttgcatgtctCtttcacaggtggaacgattc	10	11	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57085303	G	G	57085303	1	3	147	0	1	0	0	0	0	0	0	0	1747	928	32	4		4	C14orf101	14	57085303	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	3754049	57085303	50264237	283	127303											
EXOC5	10640	broad.mit.edu	37	chr14	57684737	57684737	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caatttcatctccatttgttCaattatttcttttttcttct	1	9	6	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57684737	G	G	57684737	3	3	147	1	0	0	0	0	1	0	0	0	5349	835	29	4	566	4	EXOC5	14	57684737	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	599434	57684737	49664803	284	127304											
MUDENG	55745	broad.mit.edu	37	chr14	57735985	57735985	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggtctgcgctgttcctcGgtggcgaccttaattatgag	13	11	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57735985	T	T	57735985	1	4	147	0	1	0	0	0	0	0	0	0	10077	1131	39	1		1	MUDENG	14	57735985	5'UTR	SNP	G	TCGA-49-6745-01A-11D-1855-08	51248	57735985	49613555	285	127305											
KCNH5	27133	broad.mit.edu	37	chr14	63453905	63453905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgggcaaatttcgtccaaCcttaaaaataaggaaagaaa	7	7	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63453905	A	A	63453905	3	1	147	1	0	0	0	0	1	0	0	0	8105	521	18	3	2594	3	KCNH5	14	63453905	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	5717920	63453905	43895635	286	127306											
SYNE2	23224	broad.mit.edu	37	chr14	64634013	64634013	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catttgaatgaagtgagcctCaagctcccacttagtgacgt	9	10	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64634013	G	G	64634013	2	3	147	1	0	0	0	0	0	0	0	1	15565	813	29	4		4	SYNE2	14	64634013	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	1180108	64634013	42715527	287	127307											
SMOC1	64093	broad.mit.edu	37	chr14	70477552	70477552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgagggtattgtcatccCtgaatgtgcccctgggggac	14	11	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70477552	A	A	70477552	3	1	147	1	0	0	0	0	1	0	0	0	14915	681	24	2	776	2	SMOC1	14	70477552	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	5843539	70477552	36871988	288	127308											
KIAA1409	57578	broad.mit.edu	37	chr14	94089157	94089157	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgacatctccttcaacattCtggacaaactgggagaacag	8	11	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94089157	T	T	94089157	2	4	147	1	0	0	0	0	0	0	0	1	8300	912	32	4		4	KIAA1409	14	94089157	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	23611605	94089157	13260383	289	127309											
DICER1	23405	broad.mit.edu	37	chr14	95572321	95572321	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaacctctgcatgtctagtGatgtctggtaagaatccctc	9	10	3	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95572321	A	A	95572321	1	1	147	0	1	0	0	0	0	0	0	0	4561	1305	45	4		4	DICER1	14	95572321	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	1483164	95572321	11777219	290	127310											
DYNC1H1	1778	broad.mit.edu	37	chr14	102449530	102449530	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctattcagagggcactgcGtttggtggaggcaatttcaa	12	8	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102449530	A	A	102449530	3	1	147	1	0	0	0	0	1	0	0	0	4881	1145	40	4	1158	4	DYNC1H1	14	102449530	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	6877209	102449530	4900010	291	127311											
DYNC1H1	1778	broad.mit.edu	37	chr14	102495993	102495993	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagcggagcgagctggagGagcagcagatgcacttgaac	16	8	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102495993	A	A	102495993	3	1	147	1	0	0	0	0	1	0	0	0	4881	1175	41	4	9780	4	DYNC1H1	14	102495993	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	46463	102495993	4853547	292	127312											
AHNAK2	113146	broad.mit.edu	37	chr14	105418710	105418710	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggtcggcctccaccttGggtgcagacacatccaccaa	9	16	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105418710	T	T	105418710	2	4	147	1	0	0	0	0	0	0	0	1	415	1335	47	2		2	AHNAK2	14	105418710	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	2922717	105418710	1930830	293	127313											
MGA	23269	broad.mit.edu	37	chr15	42003303	42003303	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaattcttcaggcatcatctCagaaaatcaggcgaataact	7	9	5	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42003303	G	G	42003303	4	3	147	1	0	0	0	0	0	1	0	0	9633	838	29	4	2866	4	MGA	15	42003303	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08		42003303	60528089	294	127314											
SQRDL	58472	broad.mit.edu	37	chr15	45983040	45983040	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgggatctctccaactcaCtagacaatcttgctttacgt	6	12	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45983040	T	T	45983040	1	4	147	0	1	0	0	0	0	0	0	0	15247	580	20	4		4	SQRDL	15	45983040	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	3979737	45983040	56548352	295	127315											
TCF12	6938	broad.mit.edu	37	chr15	57384139	57384139	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcaaagcttctttggtcaGagacattttttatccctttg	6	9	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57384139	C	C	57384139	1	2	147	0	1	0	0	0	0	0	0	0	15809	957	33	4		4	TCF12	15	57384139	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	11401099	57384139	45147253	296	127316											
BNIP2	663	broad.mit.edu	37	chr15	59969352	59969352	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctatttacatgcagaaggtGatttactacctctgcatctt	7	9	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59969352	A	A	59969352	1	1	147	0	1	0	0	0	0	0	0	0	1483	1305	45	4		4	BNIP2	15	59969352	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	2585213	59969352	42562040	297	127317											
CA12	771	broad.mit.edu	37	chr15	63632550	63632550	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacagtggggttgcaaggGggtgtggtcagggacccccg	19	9	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63632550	T	T	63632550	2	4	147	1	0	0	0	0	0	0	0	1	2539	1219	43	2		2	CA12	15	63632550	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	3663198	63632550	38898842	298	127318											
BNC1	646	broad.mit.edu	37	chr15	83926860	83926860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatgctttttggtggagGtttaggtttgagctgtgtct	13	5	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83926860	T	T	83926860	3	4	147	1	0	0	0	0	1	0	0	0	1480	1252	44	3	669	3	BNC1	15	83926860	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	20294310	83926860	18604532	299	127319											
TSC2	7249	broad.mit.edu	37	chr16	2127687	2127687	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgcagccgaggccttcCggtgccgcagcatcagtgtg	14	14	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2127687	A	A	2127687	2	1	147	1	0	0	0	0	0	0	0	1	16731	643	23	1		1	TSC2	16	2127687	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08		2127687	88227066	300	127320											
TSC2	7249	broad.mit.edu	37	chr16	2136400	2136400	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtacggcctggcgcctaccCgctcctgctgccccaggcct	12	19	0	0	rs140884776	by1000genomes	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2136400	A	A	2136400	1	1	147	0	1	0	0	0	0	0	0	0	16731	667	23	1		1	TSC2	16	2136400	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	8713	2136400	88218353	301	127321											
PDXDC1	23042	broad.mit.edu	37	chr16	15222101	15222101	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtcgtgccacactcggatCttccacacgctacccaggct	8	16	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15222101	A	A	15222101	1	1	147	0	1	0	0	0	0	0	0	0	11790	928	32	3		3	PDXDC1	16	15222101	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	13085701	15222101	75132652	302	127322											
MYH11	4629	broad.mit.edu	37	chr16	15817981	15817981	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgattccccaacccagcgTccatggccagagtgggggac	13	14	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15817981	C	C	15817981	1	2	147	0	1	0	0	0	0	0	0	0	10125	1682	58	5		5	MYH11	16	15817981	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	595880	15817981	74536772	303	127323											
GP2	2813	broad.mit.edu	37	chr16	20335277	20335277	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacaggcagtgtggttggtGatgccatccccaagggcagg	16	10	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20335277	A	A	20335277	2	1	147	1	0	0	0	0	0	0	0	1	6647	1280	45	4		4	GP2	16	20335277	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	4517296	20335277	70019476	304	127324											
GGA2	23062	broad.mit.edu	37	chr16	23498169	23498169	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actccctcaggcctagagcaGaagcagcagcaacagaagag	11	12	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23498169	C	C	23498169	1	2	147	0	1	0	0	0	0	0	0	0	6417	957	33	4		4	GGA2	16	23498169	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	3162892	23498169	66856584	305	127325											
ARHGAP17	55114	broad.mit.edu	37	chr16	24981885	24981885	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatattttgagcaagagctGtcagaggcagttttttctgg	12	6	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24981885	A	A	24981885	3	1	147	1	0	0	0	0	1	0	0	0	869	1377	48	4	2498	4	ARHGAP17	16	24981885	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	1483716	24981885	65372868	306	127326											
HAS3	3038	broad.mit.edu	37	chr16	69148849	69148850	+	Frame_Shift_Ins	INS	-	C	C													ctactccctcctctatatgtINSccagccttctgccggccaag							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69148850	C	C	69148849	7	5	147	1	0	1	1	0	0	0	0	0	7029	1667	58	0	1352	0	HAS3	16	69148849	Frame_Shift_Ins	INS	-	TCGA-49-6745-01A-11D-1855-08	44166964	69148849	21205904	307	127327											
GABARAPL2	11345	broad.mit.edu	37	chr16	75600696	75600696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggagggccgggggccGggaaccgaccggtgggcagg	24	9	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75600696	T	T	75600696	1	4	147	0	1	0	0	0	0	0	0	0	6214	1131	39	1		1	GABARAPL2	16	75600696	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	6451847	75600696	14754057	308	127328											
MYO1C	4641	broad.mit.edu	37	chr17	1371286	1371286	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggaccctggctgaccggtCaggttggcgtaatcaatcct	12	12	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1371286	A	A	1371286	2	1	147	1	0	0	0	0	0	0	0	1	10164	813	29	3		3	MYO1C	17	1371286	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08		1371286	79823924	309	127329											
CHRNB1	1140	broad.mit.edu	37	chr17	7350939	7350939	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgacgggcaagggcatcagGaaatccacattcatgaaggg	13	9	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7350939	A	A	7350939	3	1	147	1	0	0	0	0	1	0	0	0	3421	1175	41	4	602	4	CHRNB1	17	7350939	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	5979653	7350939	73844271	310	127330											
MYO15A	51168	broad.mit.edu	37	chr17	18025526	18025526	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctgcaaccctgaagcctCaagtccagcccattcaggac	9	16	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18025526	T	T	18025526	4	4	147	1	0	0	0	0	0	1	0	0	10157	827	29	4	3414	4	MYO15A	17	18025526	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	10674587	18025526	63169684	311	127331											
TMEM132E	124842	broad.mit.edu	37	chr17	32964896	32964896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgccgccagcaggcaaccCgctggaaaccgtgcccgcct	12	18	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32964896	A	A	32964896	3	1	147	1	0	0	0	0	1	0	0	0	16171	652	23	1	2638	1	TMEM132E	17	32964896	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	14939370	32964896	48230314	312	127332											
FBXO47	494188	broad.mit.edu	37	chr17	37118263	37118263	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaataatgtgttggctgacTgttttggacaccatgcttag	10	6	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37118263	G	G	37118263	2	3	147	1	0	0	0	0	0	0	0	1	5813	1567	55	5		5	FBXO47	17	37118263	Silent	SNP	T	TCGA-49-6745-01A-11D-1855-08	4153367	37118263	44076947	313	127333											
KRTAP4-8	728224	broad.mit.edu	37	chr17	39254013	39254013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcactggggcttgcagcaGctggacacacagcagctggg	15	12	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39254013	C	C	39254013	3	2	147	1	0	0	0	0	1	0	0	0	8628	962	34	4	237	4	KRTAP4-8	17	39254013	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	2135750	39254013	41941197	314	127334											
GRN	2896	broad.mit.edu	37	chr17	42429214	42429214	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcaggtgggtggccaagctCctattgctttctgccctccg	13	13	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42429214	T	T	42429214	1	4	147	0	1	0	0	0	0	0	0	0	6870	870	30	4		4	GRN	17	42429214	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	3175201	42429214	38765996	315	127335											
DCAKD	79877	broad.mit.edu	37	chr17	43111480	43111480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagctcccctaccctggcCaaactttctgcagaggagaa	8	15	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43111480	T	T	43111480	1	4	147	0	1	0	0	0	0	0	0	0	4312	609	21	4		4	DCAKD	17	43111480	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	682266	43111480	38083730	316	127336											
TBKBP1	9755	broad.mit.edu	37	chr17	45777124	45777124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagacctcccctcccagccCtcaggggtgtggtgtctggg	15	14	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45777124	A	A	45777124	1	1	147	0	1	0	0	0	0	0	0	0	15760	696	24	2		2	TBKBP1	17	45777124	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	2665644	45777124	35418086	317	127337											
SNF8	11267	broad.mit.edu	37	chr17	47009098	47009098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaaggaaggaggaatgGggattgaatcagttaagagt	15	2	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47009098	T	T	47009098	1	4	147	0	1	0	0	0	0	0	0	0	14960	1247	43	2		2	SNF8	17	47009098	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	1231974	47009098	34186112	318	127338											
EPX	8288	broad.mit.edu	37	chr17	56274464	56274464	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtgaggtctccctctcGctgcggctccgcaaccggac	13	16	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56274464	A	A	56274464	2	1	147	1	0	0	0	0	0	0	0	1	5242	1074	38	4		4	EPX	17	56274464	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	9265366	56274464	24920746	319	127339											
USP32	84669	broad.mit.edu	37	chr17	58275762	58275762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcattccaaagaggctgGggcgattcttctgagatgac	13	8	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58275762	T	T	58275762	3	4	147	1	0	0	0	0	1	0	0	0	17190	1232	43	2	1553	2	USP32	17	58275762	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	2001298	58275762	22919448	320	127340											
USP32	84669	broad.mit.edu	37	chr17	58422685	58422685	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgacctctaagaacacagCcacgttgacatctaaaacaa	5	12	2	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58422685	G	G	58422685	1	3	147	0	1	0	0	0	0	0	0	0	17190	754	26	4		4	USP32	17	58422685	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	146923	58422685	22772525	321	127341											
BCAS3	54828	broad.mit.edu	37	chr17	58979978	58979978	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctctctctctctttttctCagttgattcgatgtcatcag	5	11	6	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58979978	G	G	58979978	1	3	147	0	1	0	0	0	0	0	0	0	1357	841	29	4		4	BCAS3	17	58979978	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	557293	58979978	22215232	322	127342											
RECQL5	9400	broad.mit.edu	37	chr17	73654333	73654333	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcagcttcacaaaactggaGagtggtgggtcagactgaaa	12	7	3	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73654333	C	C	73654333	1	2	147	0	1	0	0	0	0	0	0	0	13311	957	33	4		4	RECQL5	17	73654333	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	14674355	73654333	7540877	323	127343											
SAP30BP	29115	broad.mit.edu	37	chr17	73663525	73663525	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagagcccgagtctgatggcGaggctggaatcgaggcggtg	18	9	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73663525	C	C	73663525	3	2	147	1	0	0	0	0	1	0	0	0	13946	1059	37	4	75	4	SAP30BP	17	73663525	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	9192	73663525	7531685	324	127344											
CETN1	1068	broad.mit.edu	37	chr18	580696	580696	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggccgtgatgacgcagaaGatgtccgagaaggacaccaa	13	10	0	5	rs114552098	by1000genomes	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	580696	A	A	580696	2	1	147	1	0	0	0	0	0	0	0	1	3304	933	33	4		4	CETN1	18	580696	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08		580696	77496552	325	127345											
KATNAL2	83473	broad.mit.edu	37	chr18	44589742	44589742	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtgagccgggtaagatctGatattcaattcacaaattta	9	6	3	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44589742	A	A	44589742	1	1	147	0	1	0	0	0	0	0	0	0	8056	1305	45	4		4	KATNAL2	18	44589742	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	44009046	44589742	33487506	326	127346											
SMAD2	4087	broad.mit.edu	37	chr18	45368254	45368254	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catctgagttaatactttgtCcaaccactgtagaggtccat	7	10	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45368254	T	T	45368254	3	4	147	1	0	0	0	0	1	0	0	0	14872	855	30	4	59	4	SMAD2	18	45368254	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	778512	45368254	32708994	327	127347											
KIAA1468	57614	broad.mit.edu	37	chr18	59894732	59894732	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagcctgcagaggtgagaGatagcaactaattagtcaag	11	9	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59894732	A	A	59894732	1	1	147	0	1	0	0	0	0	0	0	0	8306	957	33	4		4	KIAA1468	18	59894732	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	14526478	59894732	18182516	328	127348											
TCF3	6929	broad.mit.edu	37	chr19	1615775	1615775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtcctccttctcctccCgcttgatctcgctggcggcc	8	20	2	1	rs149277795	byFrequency	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1615775	A	A	1615775	3	1	147	1	0	0	0	0	1	0	0	0	15816	652	23	1	711	1	TCF3	19	1615775	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08		1615775	57513208	329	127349											
MUC16	94025	broad.mit.edu	37	chr19	9047598	9047598	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacccatgaggctgttgcctCtgattcatgtggggactcag	12	10	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9047598	G	G	9047598	3	3	147	1	0	0	0	0	1	0	0	0	10067	922	32	4	9810	4	MUC16	19	9047598	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	7431823	9047598	50081385	330	127350											
OR7D2	162998	broad.mit.edu	37	chr19	9296806	9296806	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacacgctactcctgaccGtgatggcctatgaccggttt	11	12	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9296806	A	A	9296806	3	1	147	1	0	0	0	0	1	0	0	0	11313	1145	40	4	351	4	OR7D2	19	9296806	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	249208	9296806	49832177	331	127351											
DNMT1	1786	broad.mit.edu	37	chr19	10277235	10277235	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaagcaaacaggagcagaaGaatgagggggagttcagaaa	14	6	1	4			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10277235	C	C	10277235	1	2	147	0	1	0	0	0	0	0	0	0	4715	957	33	4		4	DNMT1	19	10277235	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	980429	10277235	48851748	332	127352											
USE1	55850	broad.mit.edu	37	chr19	17327161	17327161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctggtccctgggaatcCcttggacaggaataggggtt	13	10	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17327161	A	A	17327161	1	1	147	0	1	0	0	0	0	0	0	0	17157	638	22	2		2	USE1	19	17327161	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	7049926	17327161	41801822	333	127353											
ZNF208	7757	broad.mit.edu	37	chr19	22171834	22171834	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taagcatgactgaaattattCaataaaataatttttaacac	3	5	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22171834	G	G	22171834	1	3	147	0	1	0	0	0	0	0	0	0	17892	841	29	4		4	ZNF208	19	22171834	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	4844673	22171834	36957149	334	127354											
PSG8	440533	broad.mit.edu	37	chr19	43359741	43359741	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccttccatttgatgtgctGtgtgcagggaggggctgaga	15	9	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43359741	C	C	43359741	3	2	147	1	0	0	0	0	1	0	0	0	12767	1392	48	4		4	PSG8	19	43359741	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	21187907	43359741	15769242	335	127355											
NOVA2	4858	broad.mit.edu	37	chr19	46443408	46443408	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actctcagccgccagcttctCcgccgtcaggaagcccccgg	10	19	3	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46443408	G	G	46443408	3	3	147	1	0	0	0	0	1	0	0	0	10650	864	30	4	290	4	NOVA2	19	46443408	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	3083667	46443408	12685575	336	127356											
CYTH2	9266	broad.mit.edu	37	chr19	48978303	48978303	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacacctgctgcctgaactGaggcaaatgattcgacctct	8	13	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48978303	A	A	48978303	1	1	147	0	1	0	0	0	0	0	0	0	4237	1305	45	4		4	CYTH2	19	48978303	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	2534895	48978303	10150680	337	127357											
KIR3DL1	3811	broad.mit.edu	37	chr19	55341715	55341715	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaagcccagatccaaagtTgtctcctgcccatgagcacc	8	15	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55341715	A	A	55341715	2	1	147	1	0	0	0	0	0	0	0	1	8391	1799	63	5		5	KIR3DL1	19	55341715	Silent	SNP	T	TCGA-49-6745-01A-11D-1855-08	6363412	55341715	3787268	338	127358											
ZNF524	147807	broad.mit.edu	37	chr19	56114181	56114181	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgtgcaccagatccaGggtctgaaccgccgtgggac	13	14	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56114181	T	T	56114181	3	4	147	1	0	0	0	0	1	0	0	0	18093	1000	35	2	705	2	ZNF524	19	56114181	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	772466	56114181	3014802	339	127359											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56736297	56736297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcacgtgagaaatctcaGggtccacgtcgtgatttcca	10	10	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56736297	A	A	56736297	3	1	147	1	0	0	0	0	1	0	0	0	18367	1000	35	4	1387	4	ZSCAN5A	19	56736297	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	622116	56736297	2392686	340	127360											
ZIK1	284307	broad.mit.edu	37	chr19	58102051	58102051	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatcggagaatccacaccgGagaaaggccttatgagtgca	11	10	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58102051	A	A	58102051	3	1	147	1	0	0	0	0	1	0	0	0	17809	1174	41	4	886	4	ZIK1	19	58102051	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	1365754	58102051	1026932	341	127361											
ZNF135	7694	broad.mit.edu	37	chr19	58578972	58578972	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catccttgaccaaacaccagCgaatccacacaggggagaag	9	13	0	2	rs149615463	byFrequency	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58578972	T	T	58578972	4	4	147	1	0	0	0	0	0	1	0	0	17851	760	27	4	1323	4	ZNF135	19	58578972	Nonsense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	476921	58578972	550011	342	127362											
TMX4	56255	broad.mit.edu	37	chr20	7963023	7963023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggctctacttcctcccGggtcacaccgtcctctcctg	7	19	4	0	rs144787670	by1000genomes	TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7963023	T	T	7963023	2	4	147	1	0	0	0	0	0	0	0	1	16392	1115	39	1		1	TMX4	20	7963023	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08		7963023	55062497	343	127363											
BTBD3	22903	broad.mit.edu	37	chr20	11899337	11899337	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaatgtatttgaacacaAatctgtttcctcttttccca	4	10	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11899337	G	G	11899337	1	3	147	0	1	0	0	0	0	0	0	0	1554	29	1	5		5	BTBD3	20	11899337	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	3936314	11899337	51126183	344	127364											
C20orf12	55184	broad.mit.edu	37	chr20	18432608	18432608	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggactgtgtcttgccTgccaaacagataccatttac	8	10	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18432608	A	A	18432608	1	1	147	0	1	0	0	0	0	0	0	0	2107	1595	55	5		5	C20orf12	20	18432608	Intron	SNP	T	TCGA-49-6745-01A-11D-1855-08	6533271	18432608	44592912	345	127365											
ACSS1	84532	broad.mit.edu	37	chr20	25038263	25038263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccactgcttagagcgggcGgggcggacggaataccggag	18	10	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25038263	T	T	25038263	1	4	147	0	1	0	0	0	0	0	0	0	188	1131	39	1		1	ACSS1	20	25038263	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	6605655	25038263	37987257	346	127366											
ZNF337	26152	broad.mit.edu	37	chr20	25666082	25666082	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaggaaggcagggccagGtggtctgaagagcagccaag	18	7	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25666082	A	A	25666082	1	1	147	0	1	0	0	0	0	0	0	0	17979	1276	44	4		4	ZNF337	20	25666082	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	627819	25666082	37359438	347	127367											
SUN5	140732	broad.mit.edu	37	chr20	31571785	31571785	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcagtcacagaggcagctCacccatagactcccaccctg	7	16	3	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31571785	A	A	31571785	1	1	147	0	1	0	0	0	0	0	0	0	15512	841	29	3		3	SUN5	20	31571785	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08	5905703	31571785	31453735	348	127368											
ZSWIM3	140831	broad.mit.edu	37	chr20	44506472	44506472	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgtggattacatagacttCtttaataccaaaggcttgaa	7	6	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44506472	T	T	44506472	2	4	147	1	0	0	0	0	0	0	0	1	18371	912	32	4		4	ZSWIM3	20	44506472	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	12934687	44506472	18519048	349	127369											
SLC12A5	57468	broad.mit.edu	37	chr20	44673850	44673850	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccagagagaccacacagtGacccagggccataaccagcc	10	16	0	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44673850	A	A	44673850	1	1	147	0	1	0	0	0	0	0	0	0	14499	1305	45	4		4	SLC12A5	20	44673850	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	167378	44673850	18351670	350	127370											
PREX1	57580	broad.mit.edu	37	chr20	47269227	47269227	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatcctcatgggtgtggtaGatccactggtacaggccctg	13	11	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47269227	T	T	47269227	2	4	147	1	0	0	0	0	0	0	0	1	12582	932	33	3		3	PREX1	20	47269227	Silent	SNP	G	TCGA-49-6745-01A-11D-1855-08	2595377	47269227	15756293	351	127371											
CDH4	1002	broad.mit.edu	37	chr20	60498691	60498691	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatccgcctggaggagggCgtgccccccggcaccgtgct	15	16	0	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60498691	T	T	60498691	2	4	147	1	0	0	0	0	0	0	0	1	3142	755	27	4		4	CDH4	20	60498691	Silent	SNP	C	TCGA-49-6745-01A-11D-1855-08	13229464	60498691	2526829	352	127372											
BAGE2	85319	broad.mit.edu	37	chr21	11039153	11039153	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatgaagtgctttcctcaTgtggggacactaaggtttct	10	7	2	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11039153	C	C	11039153	1	2	147	0	1	0	0	0	0	0	0	0	1297	1479	51	5		5	BAGE2	21	11039153	3'UTR	SNP	T	TCGA-49-6745-01A-11D-1855-08		11039153	37090742	353	127373											
LIPI	149998	broad.mit.edu	37	chr21	15516292	15516292	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttaataggaatggggatAtttgtgatatactgacaaac	9	3	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15516292	G	G	15516292	1	3	147	0	1	0	0	0	0	0	0	0	8898	464	16	5		5	LIPI	21	15516292	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	4477139	15516292	32613603	354	127374											
ITSN1	6453	broad.mit.edu	37	chr21	35228977	35228977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagccacgaggatcttccGtgtgaagttgtgtgggcttc	14	9	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35228977	T	T	35228977	1	4	147	0	1	0	0	0	0	0	0	0	7996	1160	40	3		3	ITSN1	21	35228977	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	19712685	35228977	12900918	355	127375											
IGSF5	150084	broad.mit.edu	37	chr21	41142768	41142768	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaacttaaaaaaaaaaAgaaaaaaaaaaagaaaactt	3	3	0	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41142768	G	G	41142768	1	3	147	0	1	0	0	0	0	0	0	0	7672	87	3	5		5	IGSF5	21	41142768	Intron	SNP	A	TCGA-49-6745-01A-11D-1855-08	5913791	41142768	6987127	356	127376											
PCNT	5116	broad.mit.edu	37	chr21	47805840	47805840	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcgggagcgggagaaccggGaaggcgcaaacctcctctcc	16	13	1	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47805840	A	A	47805840	3	1	147	1	0	0	0	0	1	0	0	0	11684	1175	41	4	3472	4	PCNT	21	47805840	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	6663072	47805840	324055	357	127377											
ADRBK2	157	broad.mit.edu	37	chr22	26044463	26044463	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggatgggaatatggaatgGaaccacaaaagtagcaatca	12	5	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26044463	A	A	26044463	1	1	147	0	1	0	0	0	0	0	0	0	344	1189	41	4		4	ADRBK2	22	26044463	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08		26044463	25260103	358	127378											
PLA2G6	8398	broad.mit.edu	37	chr22	38536118	38536118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcaggccaggtgcagcGgggtcagcccttggttattc	16	11	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38536118	T	T	38536118	3	4	147	1	0	0	0	0	1	0	0	0	12103	1116	39	1	1804	1	PLA2G6	22	38536118	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	12491655	38536118	12768448	359	127379											
CACNA1I	8911	broad.mit.edu	37	chr22	40015399	40015399	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaggcccctcaaagccatCaaccgcgtgcccagtgagtc	10	16	2	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40015399	G	G	40015399	3	3	147	1	0	0	0	0	1	0	0	0	2572	816	29	4	581	4	CACNA1I	22	40015399	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	1479281	40015399	11289167	360	127380											
ST13	6767	broad.mit.edu	37	chr22	41226755	41226756	+	Intron	INS	-	T	T													ctgtagccagcattaaataaINSaagagccaggaattaaaatt							TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41226756	T	T	41226755	6	5	147	0	1	1	1	0	0	0	0	0	15328	29	1	0		0	ST13	22	41226755	Intron	INS	-	TCGA-49-6745-01A-11D-1855-08	1211356	41226755	10077811	361	127381											
MOV10L1	54456	broad.mit.edu	37	chr22	50553671	50553671	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgtggtcatctgtgacGgaaagtaagggcctggaggt	15	6	3	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50553671	T	T	50553671	4	4	147	1	0	0	0	0	0	1	0	0	9813	1117	39	1	1326	1	MOV10L1	22	50553671	Nonsense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	9326916	50553671	750895	362	127382											
KDM6A	7403	broad.mit.edu	37	chrX	44935891	44935891	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggattctttttttttttttCtgttttccaaataaatgtac	4	5	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44935891	T	T	44935891	1	4	147	0	1	0	0	0	0	0	0	0	8207	928	32	4		4	KDM6A	23	44935891	Intron	SNP	C	TCGA-49-6745-01A-11D-1855-08		44935891	110334669	363	127383											
NLGN3	54413	broad.mit.edu	37	chrX	70375012	70375012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgggctggcaggggtGggggagcaagggcatcccac	18	13	0	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70375012	T	T	70375012	1	4	147	0	1	0	0	0	0	0	0	0	10558	1363	47	2		2	NLGN3	23	70375012	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	25439121	70375012	84895548	364	127384											
NRK	203447	broad.mit.edu	37	chrX	105153377	105153377	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaggaacctgagtcattaCgagtaaatgcccaggtattt	10	8	1	2			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105153377	G	G	105153377	3	3	147	1	0	0	0	0	1	0	0	0	10750	528	19	4	1794	4	NRK	23	105153377	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	34778365	105153377	50117183	365	127385											
SLC6A14	11254	broad.mit.edu	37	chrX	115572321	115572321	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttcaccatgcttttttGtatatttgtgcatatagcta	5	7	2	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115572321	A	A	115572321	1	1	147	0	1	0	0	0	0	0	0	0	14791	1392	48	4		4	SLC6A14	23	115572321	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	10418944	115572321	39698239	366	127386											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686524	125686524	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgccaagccctgcgacggcGagctctcggcgtccgcctcg	13	19	1	0			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125686524	A	A	125686524	3	1	147	1	0	0	0	0	1	0	0	0	4297	1059	37	4	1327	4	DCAF12L1	23	125686524	Missense_Mutation	SNP	G	TCGA-49-6745-01A-11D-1855-08	10114203	125686524	29584036	367	127387											
CD40LG	959	broad.mit.edu	37	chrX	135732341	135732341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcctcttgttgatgccGtggaaatgaatgtagaggca	12	8	1	3			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135732341	A	A	135732341	1	1	147	0	1	0	0	0	0	0	0	0	3046	1160	40	4		4	CD40LG	23	135732341	Intron	SNP	G	TCGA-49-6745-01A-11D-1855-08	10045817	135732341	19538219	368	127388											
F8	2157	broad.mit.edu	37	chrX	154157942	154157942	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctccttctcattgtagtCtatctgtgtgagggtgctcg	10	9	4	1			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154157942	G	G	154157942	3	3	147	1	0	0	0	0	1	0	0	0	5393	913	32	4	3012	4	F8	23	154157942	Missense_Mutation	SNP	C	TCGA-49-6745-01A-11D-1855-08	18425601	154157942	1112618	369	127389											
SLC35E2	9906	broad.mit.edu	37	chr1	1666259	1666259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcttcccgctcctccCgatcactgggacgtcctatg	9	16	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1666259	A	A	1666259	3	1	148	1	0	0	0	0	1	0	0	0	14699	652	23	1	1456	1	SLC35E2	1	1666259	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		1666259	247584362	1	127390											
PLCH2	9651	broad.mit.edu	37	chr1	2430207	2430207	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgacccctttgtggaggtgGagatcattgggctccctgtg	14	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2430207	A	A	2430207	3	1	148	1	0	0	0	0	1	0	0	0	12133	1175	41	4	2444	4	PLCH2	1	2430207	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	763948	2430207	246820414	2	127391											
GPR153	387509	broad.mit.edu	37	chr1	6313832	6313832	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagactatggtggtcacgagGcccgtggtctgcagagaggt	16	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6313832	A	A	6313832	2	1	148	1	0	0	0	0	0	0	0	1	6724	1190	42	4		4	GPR153	1	6313832	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	3883625	6313832	242936789	3	127392											
TAS1R1	80835	broad.mit.edu	37	chr1	6636364	6636364	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagggacgagaccttcctGatgggctgaaaccaccagga	14	10	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6636364	A	A	6636364	1	1	148	0	1	0	0	0	0	0	0	0	15681	1305	45	4		4	TAS1R1	1	6636364	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	322532	6636364	242614257	4	127393											
MTOR	2475	broad.mit.edu	37	chr1	11175571	11175571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggatcaacagagataaCggatgaaaaaatcaataagt	11	4	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11175571	A	A	11175571	1	1	148	0	1	0	0	0	0	0	0	0	10048	551	19	3		3	MTOR	1	11175571	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4539207	11175571	238075050	5	127394											
NPPA	4878	broad.mit.edu	37	chr1	11907500	11907500	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatggtccagcaaattcttTagaaaaggaaaatacaggga	9	5	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11907500	C	C	11907500	1	2	148	0	1	0	0	0	0	0	0	0	10686	1769	61	5		5	NPPA	1	11907500	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	731929	11907500	237343121	6	127395											
VPS13D	55187	broad.mit.edu	37	chr1	12337880	12337880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatccagaattttgtggCgggagatgatgaatccagaa	11	6	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12337880	A	A	12337880	3	1	148	1	0	0	0	0	1	0	0	0	17319	768	27	3	4305	3	VPS13D	1	12337880	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	430380	12337880	236912741	7	127396											
DHRS3	9249	broad.mit.edu	37	chr1	12628246	12628246	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggcagccggattcttcgCtggggacaggagctgtcctg	17	10	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12628246	G	G	12628246	1	3	148	0	1	0	0	0	0	0	0	0	4531	812	28	4		4	DHRS3	1	12628246	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	290366	12628246	236622375	8	127397											
HSPB7	27129	broad.mit.edu	37	chr1	16343586	16343586	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccttctcagcccgcacctCgatgtggttgttggaggtgg	13	12	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16343586	A	A	16343586	4	1	148	1	0	0	0	0	0	1	0	0	7492	893	31	3	204	3	HSPB7	1	16343586	Nonsense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3715340	16343586	232907035	9	127398											
ARHGEF19	128272	broad.mit.edu	37	chr1	16531234	16531234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccactttacctacccacCcctgactgccccgactcact	4	21	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16531234	A	A	16531234	1	1	148	0	1	0	0	0	0	0	0	0	904	638	22	2		2	ARHGEF19	1	16531234	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	187648	16531234	232719387	10	127399											
PADI6	353238	broad.mit.edu	37	chr1	17725353	17725353	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccctgacctggtgaggggcGactgcgcatccctgggtggg	17	12	0	2	rs2489608		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17725353	A	A	17725353	1	1	148	0	1	0	0	0	0	0	0	0	11475	1073	37	4		4	PADI6	1	17725353	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1194119	17725353	231525268	11	127400											
RAP1GAP	5909	broad.mit.edu	37	chr1	21936680	21936680	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtaggcatgcaggaagttgGacgcgatcatgtcgggcacg	16	9	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21936680	A	A	21936680	3	1	148	1	0	0	0	0	1	0	0	0	13145	1174	41	4	1185	4	RAP1GAP	1	21936680	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4211327	21936680	227313941	12	127401											
HSPG2	3339	broad.mit.edu	37	chr1	22167739	22167739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctttcccactttcaccCacacggggccctcggggagc	10	18	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22167739	A	A	22167739	3	1	148	1	0	0	0	0	1	0	0	0	7500	595	21	2	3915	2	HSPG2	1	22167739	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	231059	22167739	227082882	13	127402											
MYOM3	127294	broad.mit.edu	37	chr1	24383886	24383886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctccttgggctcgtcccCgtgcttgaacacactgatgg	11	14	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24383886	A	A	24383886	3	1	148	1	0	0	0	0	1	0	0	0	10187	652	23	1	35	1	MYOM3	1	24383886	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2216147	24383886	224866735	14	127403											
COL16A1	1307	broad.mit.edu	37	chr1	32138491	32138491	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgggttagagatgggcagGatgggccaactggggagccc	18	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32138491	C	C	32138491	1	2	148	0	1	0	0	0	0	0	0	0	3705	1189	41	4		4	COL16A1	1	32138491	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	7754605	32138491	217112130	15	127404											
CSMD2	114784	broad.mit.edu	37	chr1	34238194	34238194	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcctggcttcttagccgAccattggttattcttttggc	10	11	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34238194	T	T	34238194	3	4	148	1	0	0	0	0	1	0	0	0	3979	275	10	5	8989	5	CSMD2	1	34238194	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	2099703	34238194	215012427	16	127405											
DLGAP3	58512	broad.mit.edu	37	chr1	35365842	35365842	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccccatccttgccaccGgtggggtaacccccccagtc	8	19	1	0	rs149715442		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35365842	T	T	35365842	2	4	148	1	0	0	0	0	0	0	0	1	4601	1103	39	1		1	DLGAP3	1	35365842	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1127648	35365842	213884779	17	127406											
KIAA0319L	79932	broad.mit.edu	37	chr1	35940490	35940490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacactctctccagcagataCcaccagttcctttataactg	5	14	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35940490	A	A	35940490	3	1	148	1	0	0	0	0	1	0	0	0	8239	507	18	3	2286	3	KIAA0319L	1	35940490	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	574648	35940490	213310131	18	127407											
RSPO1	284654	broad.mit.edu	37	chr1	38082184	38082184	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcatgtcggggttgcgGgcgtcgaagtatccaggtgg	17	7	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38082184	T	T	38082184	2	4	148	1	0	0	0	0	0	0	0	1	13820	1219	43	2		2	RSPO1	1	38082184	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	2141694	38082184	211168437	19	127408											
C1orf109	54955	broad.mit.edu	37	chr1	38155361	38155361	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttaaatctgggaaggcCcgaagcgccggcacatcctc	10	13	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38155361	A	A	38155361	2	1	148	1	0	0	0	0	0	0	0	1	2002	610	22	2		2	C1orf109	1	38155361	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	73177	38155361	211095260	20	127409											
PPIE	10450	broad.mit.edu	37	chr1	40207001	40207001	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcttcccactaccccaCatagtaattacttgtttttg	4	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40207001	T	T	40207001	1	4	148	0	1	0	0	0	0	0	0	0	12423	493	17	4		4	PPIE	1	40207001	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2051640	40207001	209043620	21	127410											
FAM183A	440585	broad.mit.edu	37	chr1	43616454	43616454	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catacagtcaccaggaagccCatgtcttggcatgataacct	8	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43616454	T	T	43616454	2	4	148	1	0	0	0	0	0	0	0	1	5556	581	21	4		4	FAM183A	1	43616454	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	3409453	43616454	205634167	22	127411											
KIF2C	11004	broad.mit.edu	37	chr1	45216369	45216369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcctgccctaccaacaCggctttcttatttggaaatc	6	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45216369	A	A	45216369	1	1	148	0	1	0	0	0	0	0	0	0	8369	551	19	3		3	KIF2C	1	45216369	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1599915	45216369	204034252	23	127412											
SLC5A9	200010	broad.mit.edu	37	chr1	48690614	48690614	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactctgggccccttctctcCcgcccaaacccgccccgcaa	7	22	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48690614	G	G	48690614	1	3	148	0	1	0	0	0	0	0	0	0	14786	638	22	4		4	SLC5A9	1	48690614	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3474245	48690614	200560007	24	127413											
SLC1A7	6512	broad.mit.edu	37	chr1	53558282	53558282	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggatgccacggatgaagacGatgggattcttcttggtgat	14	6	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53558282	T	T	53558282	2	4	148	1	0	0	0	0	0	0	0	1	14550	1048	37	3		3	SLC1A7	1	53558282	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	4867668	53558282	195692339	25	127414											
BSND	7809	broad.mit.edu	37	chr1	55474247	55474247	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgggctgccagatggagcCggggacctcctcccggacaa	14	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55474247	A	A	55474247	2	1	148	1	0	0	0	0	0	0	0	1	1540	639	23	1		1	BSND	1	55474247	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	1915965	55474247	193776374	26	127415											
C8A	731	broad.mit.edu	37	chr1	57372457	57372457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaaaaaatttggaggtgGcaaaactggcaagtgtttag	12	3	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57372457	T	T	57372457	3	4	148	1	0	0	0	0	1	0	0	0	2441	1203	42	3	1244	3	C8A	1	57372457	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1898210	57372457	191878164	27	127416											
C8B	732	broad.mit.edu	37	chr1	57417726	57417726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgtctcttacctgtgGcgtgtagctttccacattgt	10	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57417726	T	T	57417726	3	4	148	1	0	0	0	0	1	0	0	0	2442	1203	42	3	1146	3	C8B	1	57417726	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	45269	57417726	191832895	28	127417											
DAB1	1600	broad.mit.edu	37	chr1	58071770	58071770	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctctgatcaagtcagCacataccatctcctgggatt	7	13	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58071770	T	T	58071770	1	4	148	0	1	0	0	0	0	0	0	0	4250	725	25	4		4	DAB1	1	58071770	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	654044	58071770	191178851	29	127418											
DAB1	1600	broad.mit.edu	37	chr1	58514089	58514089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaaagctacctccacctcTattgttatagctgtcatagc	6	13	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514089	A	A	58514089	1	1	148	0	1	0	0	0	0	0	0	0	4250	1537	53	5		5	DAB1	1	58514089	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	442319	58514089	190736532	30	127419											
LEPR	3953	broad.mit.edu	37	chr1	66070859	66070859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctacacaatgtggattagGatcaatcactctctaggttc	9	9	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66070859	T	T	66070859	3	4	148	1	0	0	0	0	1	0	0	0	8800	1165	41	3	1576	3	LEPR	1	66070859	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	7556770	66070859	183179762	31	127420											
SGIP1	84251	broad.mit.edu	37	chr1	67206396	67206396	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgatatctctcagaagtcaGaaaatggaggtaatggaatc	10	6	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67206396	A	A	67206396	3	1	148	1	0	0	0	0	1	0	0	0	14319	943	33	4	2380	4	SGIP1	1	67206396	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1135537	67206396	182044225	32	127421											
WLS	79971	broad.mit.edu	37	chr1	68659930	68659930	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgaaaagagaaagtttgtCtgttttagaaaagccatcta	9	5	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68659930	A	A	68659930	1	1	148	0	1	0	0	0	0	0	0	0	17503	928	32	3		3	WLS	1	68659930	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1453534	68659930	180590691	33	127422											
RPE65	6121	broad.mit.edu	37	chr1	68910296	68910296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtagtaatcttcccccactGggtagacattaacaagggca	9	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68910296	T	T	68910296	3	4	148	1	0	0	0	0	1	0	0	0	13656	1348	47	2	1228	2	RPE65	1	68910296	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	250366	68910296	180340325	34	127423											
TNNI3K	51086	broad.mit.edu	37	chr1	74905351	74905351	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgttttacagagttcaCtggatttttataacttcaag	6	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74905351	G	G	74905351	1	3	148	0	1	0	0	0	0	0	0	0	16452	580	20	4		4	TNNI3K	1	74905351	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	5995055	74905351	174345270	35	127424											
SLC44A5	204962	broad.mit.edu	37	chr1	75862347	75862347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaaaatatttgtagggGctgatgactctgaggttcta	10	5	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75862347	T	T	75862347	1	4	148	0	1	0	0	0	0	0	0	0	14753	1218	42	3		3	SLC44A5	1	75862347	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	956996	75862347	173388274	36	127425											
ELTD1	64123	broad.mit.edu	37	chr1	79470904	79470904	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacaaagtggaaaaaaccActaaataaaatagagaaata	5	5	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79470904	T	T	79470904	3	4	148	1	0	0	0	0	1	0	0	0	5126	173	6	5	2105	5	ELTD1	1	79470904	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	3608557	79470904	169779717	37	127426											
CLCA2	9635	broad.mit.edu	37	chr1	86894260	86894260	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acggatcacgaggtaagtggGaccaataaaacaatagccat	10	8	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86894260	T	T	86894260	1	4	148	0	1	0	0	0	0	0	0	0	3489	1189	41	3		3	CLCA2	1	86894260	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	7423356	86894260	162356361	38	127427											
GBP4	115361	broad.mit.edu	37	chr1	89651052	89651052	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttaagagccttaactgtTcatttttagtgctttcaatt	5	7	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89651052	C	C	89651052	3	2	148	1	0	0	0	0	1	0	0	0	6338	1783	62	5	118	5	GBP4	1	89651052	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	2756792	89651052	159599569	39	127428											
TGFBR3	7049	broad.mit.edu	37	chr1	92262969	92262969	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaagctctccatcaaggCctggacaggatgggaggcac	14	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92262969	A	A	92262969	3	1	148	1	0	0	0	0	1	0	0	0	15946	739	26	3	2494	3	TGFBR3	1	92262969	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2611917	92262969	156987652	40	127429											
BRDT	676	broad.mit.edu	37	chr1	92445140	92445140	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacaggatgttttcgaaacGcatttttcaaagatcccgat	7	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92445140	A	A	92445140	2	1	148	1	0	0	0	0	0	0	0	1	1517	1074	38	4		4	BRDT	1	92445140	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	182171	92445140	156805481	41	127430											
BTBD8	284697	broad.mit.edu	37	chr1	92604822	92604822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagattagaacatcatcttGgctcgaagtttatgggaaaa	10	5	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92604822	T	T	92604822	1	4	148	0	1	0	0	0	0	0	0	0	1557	1363	47	2		2	BTBD8	1	92604822	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	159682	92604822	156645799	42	127431											
CCDC18	343099	broad.mit.edu	37	chr1	93705087	93705087	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgtacttaacgaagtgaAataatgtgagaatttgagat	9	2	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93705087	T	T	93705087	1	4	148	0	1	0	0	0	0	0	0	0	2821	29	1	5		5	CCDC18	1	93705087	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1100265	93705087	155545534	43	127432											
DPYD	1806	broad.mit.edu	37	chr1	98011766	98011766	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaacaagaacaggacaaaaCgaggatggcaacagaagagt	11	7	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98011766	G	G	98011766	1	3	148	0	1	0	0	0	0	0	0	0	4785	551	19	4		4	DPYD	1	98011766	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4306679	98011766	151238855	44	127433											
LPPR4	9890	broad.mit.edu	37	chr1	99764492	99764492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacttagagaaaatgaacaCaatagattttaagatcttaa	5	5	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99764492	A	A	99764492	1	1	148	0	1	0	0	0	0	0	0	0	9014	493	17	3		3	LPPR4	1	99764492	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1752726	99764492	149486129	45	127434											
LPPR4	9890	broad.mit.edu	37	chr1	99766361	99766361	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaattattgcttattgccTtgtgacttttaagttgaaca	6	5	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99766361	C	C	99766361	1	2	148	0	1	0	0	0	0	0	0	0	9014	1624	56	5		5	LPPR4	1	99766361	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1869	99766361	149484260	46	127435											
LPPR4	9890	broad.mit.edu	37	chr1	99771956	99771956	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagtggttaaaagctgCtgaaaagactgtggcctgta	13	7	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771956	T	T	99771956	3	4	148	1	0	0	0	0	1	0	0	0	9014	797	28	4	1708	4	LPPR4	1	99771956	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	5595	99771956	149478665	47	127436											
AGL	178	broad.mit.edu	37	chr1	100382210	100382210	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattatatttttccagattGatgggcccggagactactgc	9	8	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100382210	T	T	100382210	3	4	148	1	0	0	0	0	1	0	0	0	384	1281	45	3	4599	3	AGL	1	100382210	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	610254	100382210	148868411	48	127437											
LRRC39	127495	broad.mit.edu	37	chr1	100624028	100624028	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttgagacggagtcttgctCtgtcgcccaggctggagtgc	14	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100624028	A	A	100624028	1	1	148	0	1	0	0	0	0	0	0	0	9082	928	32	3		3	LRRC39	1	100624028	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	241818	100624028	148626593	49	127438											
CDC14A	8556	broad.mit.edu	37	chr1	100858742	100858742	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctctcaatttagatccaGctgtgagttgcatgttcttt	7	8	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100858742	A	A	100858742	1	1	148	0	1	0	0	0	0	0	0	0	3086	986	34	4		4	CDC14A	1	100858742	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	234714	100858742	148391879	50	127439											
COL11A1	1301	broad.mit.edu	37	chr1	103354079	103354080	+	Intron	DNP	GG	TT	TT													ataagttcagagaaatcattGgcagcttccagatgcaaact							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	103354080	TT	TT	103354079	1	4	148	0	1	0	0	0	0	0	0	0	3699	1363	47	2		2	COL11A1	1	103354079	Intron	DNP	GG	TCGA-49-6767-01A-11D-1855-08	2495337	103354079	145896542	51	127440											
COL11A1	1301	broad.mit.edu	37	chr1	103474073	103474073	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgaaccaggccccccCtatagagaaaaagtgaagat	9	11	0	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103474073	A	A	103474073	5	1	148	1	0	0	0	0	0	0	1	0	3699	695	24	2	4003	2	COL11A1	1	103474073	Splice_Site	SNP	C	TCGA-49-6767-01A-11D-1855-08	119994	103474073	145776548	52	127441											
AMY2B	280	broad.mit.edu	37	chr1	104115988	104115989	+	Intron	DNP	GG	TT	TT													atacgaatttagatctcttaGggacacaggttaacaggttt							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	104115989	TT	TT	104115988	1	4	148	0	1	0	0	0	0	0	0	0	595	1015	35	2		2	AMY2B	1	104115988	Intron	DNP	GG	TCGA-49-6767-01A-11D-1855-08	641915	104115988	145134633	53	127442											
AMY2A	279	broad.mit.edu	37	chr1	104166313	104166313	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaagaaaaccagaggatAgagagatgatgaagacccag	12	7	0	8			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104166313	C	C	104166313	1	2	148	0	1	0	0	0	0	0	0	0	594	435	15	5		5	AMY2A	1	104166313	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	50325	104166313	145084308	54	127443											
SLC6A17	388662	broad.mit.edu	37	chr1	110734898	110734898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttacctgggagtgggcagGggtgggggcgcaggtgtgca	21	8	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110734898	T	T	110734898	1	4	148	0	1	0	0	0	0	0	0	0	14794	1247	43	2		2	SLC6A17	1	110734898	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6568585	110734898	138515723	55	127444											
OVGP1	5016	broad.mit.edu	37	chr1	111962359	111962359	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaacaaatctgccaagagGaccaccaggttagttctggg	12	9	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111962359	A	A	111962359	1	1	148	0	1	0	0	0	0	0	0	0	11419	1189	41	4		4	OVGP1	1	111962359	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1227461	111962359	137288262	56	127445											
SLC16A1	6566	broad.mit.edu	37	chr1	113471717	113471717	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttaatgggtacttacctcCaccatacatgacagccaaca	5	14	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113471717	T	T	113471717	3	4	148	1	0	0	0	0	1	0	0	0	14515	603	21	4	1304	4	SLC16A1	1	113471717	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1509358	113471717	135778904	57	127446											
SPAG17	200162	broad.mit.edu	37	chr1	118571033	118571033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctgtaaataattcagCatgtgaataatgggctgtca	8	7	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118571033	A	A	118571033	1	1	148	0	1	0	0	0	0	0	0	0	15095	725	25	3		3	SPAG17	1	118571033	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	5099316	118571033	130679588	58	127447											
SPAG17	200162	broad.mit.edu	37	chr1	118574205	118574205	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggacgttaatgtatctgcAcaataaaacgtatgcactat	8	7	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118574205	G	G	118574205	1	3	148	0	1	0	0	0	0	0	0	0	15095	174	6	5		5	SPAG17	1	118574205	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	3172	118574205	130676416	59	127448											
PDE4DIP	9659	broad.mit.edu	37	chr1	144882775	144882775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccacagtctcaaccatcaCctcgcccttctccttgtctt	3	18	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144882775	A	A	144882775	3	1	148	1	0	0	0	0	1	0	0	0	11737	507	18	3	3880	3	PDE4DIP	1	144882775	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	26308570	144882775	104367846	60	127449											
ITGA10	8515	broad.mit.edu	37	chr1	145530222	145530222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacctctttcccttgttgCccccagctcagtgtcctcta	7	16	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145530222	A	A	145530222	1	1	148	0	1	0	0	0	0	0	0	0	7943	754	26	3		3	ITGA10	1	145530222	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	647447	145530222	103720399	61	127450											
NBPF10	100132406	broad.mit.edu	37	chr1	146013498	146013498	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaccctctgagttgacatCtggctctcagcctgttgctc	9	13	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146013498	A	A	146013498	1	1	148	0	1	0	0	0	0	0	0	0	10287	928	32	3		3	NBPF10	1	146013498	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	483276	146013498	103237123	62	127451											
PRPF3	9129	broad.mit.edu	37	chr1	150300837	150300837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcaggagtaaagaagcgacGaataccccgttttgaggagg	13	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150300837	T	T	150300837	3	4	148	1	0	0	0	0	1	0	0	0	12671	1058	37	3	345	3	PRPF3	1	150300837	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4287339	150300837	98949784	63	127452											
ECM1	1893	broad.mit.edu	37	chr1	150484749	150484749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccctcatctagttgccaGggacgataagggaagtcgat	12	10	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150484749	T	T	150484749	1	4	148	0	1	0	0	0	0	0	0	0	4937	1015	35	2		2	ECM1	1	150484749	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	183912	150484749	98765872	64	127453											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150531542	150531542	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaggagcaggaactggGcagagctgtccaacaggaag	16	8	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150531542	A	A	150531542	2	1	148	1	0	0	0	0	0	0	0	1	277	1190	42	4		4	ADAMTSL4	1	150531542	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	46793	150531542	98719079	65	127454											
HRNR	388697	broad.mit.edu	37	chr1	152187706	152187706	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctagagccgtgttgtccGtagccagaggagtgacctga	14	9	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152187706	A	A	152187706	2	1	148	1	0	0	0	0	0	0	0	1	7426	1140	40	4		4	HRNR	1	152187706	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1656164	152187706	97062915	66	127455											
ADAR	103	broad.mit.edu	37	chr1	154569800	154569800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttgactgaggagcctgaCctagcctctgccaggctgcc	12	13	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154569800	A	A	154569800	1	1	148	0	1	0	0	0	0	0	0	0	281	522	18	3		3	ADAR	1	154569800	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2382094	154569800	94680821	67	127456											
DCST2	127579	broad.mit.edu	37	chr1	154995563	154995563	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgcttaggactcacaattCccaggtgccaactcctgctt	7	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154995563	T	T	154995563	1	4	148	0	1	0	0	0	0	0	0	0	4336	870	30	4		4	DCST2	1	154995563	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	425763	154995563	94255058	68	127457											
MEF2D	4209	broad.mit.edu	37	chr1	156450847	156450847	+	Intron	DEL	C	-	-													ttccagcccctccctaagggCcccctactcttccccgacct							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156450847	-	-	156450847	6	5	148	0	1	1	0	1	0	0	0	0	9551	754	26	0		0	MEF2D	1	156450847	Intron	DEL	C	TCGA-49-6767-01A-11D-1855-08	1455284	156450847	92799774	69	127458											
IQGAP3	128239	broad.mit.edu	37	chr1	156514159	156514159	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttgagagaaaggagcCtgccaaaaccaccgtagcta	10	11	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156514159	A	A	156514159	1	1	148	0	1	0	0	0	0	0	0	0	7886	696	24	2		2	IQGAP3	1	156514159	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	63312	156514159	92736462	70	127459											
SH2D2A	9047	broad.mit.edu	37	chr1	156784800	156784800	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggacttgccctgcccctgtCtgggccaatttcctcctcca	8	17	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156784800	A	A	156784800	1	1	148	0	1	0	0	0	0	0	0	0	14345	928	32	3		3	SH2D2A	1	156784800	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	270641	156784800	92465821	71	127460											
CD1D	912	broad.mit.edu	37	chr1	158152695	158152695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcctggctgtcccgtgGccccagtcctggccctggcc	13	18	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158152695	T	T	158152695	3	4	148	1	0	0	0	0	1	0	0	0	3007	1203	42	3	649	3	CD1D	1	158152695	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1367895	158152695	91097926	72	127461											
SPTA1	6708	broad.mit.edu	37	chr1	158650416	158650416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcacttcaacaactctcCcttctttagctaccagctcc	4	16	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158650416	A	A	158650416	3	1	148	1	0	0	0	0	1	0	0	0	15234	623	22	2	6816	2	SPTA1	1	158650416	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	497721	158650416	90600205	73	127462											
PYHIN1	149628	broad.mit.edu	37	chr1	158911940	158911940	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcagacacagttctttcaTgtgaaggttttaaacatcaa	7	8	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158911940	G	G	158911940	3	3	148	1	0	0	0	0	1	0	0	0	12973	1461	51	5	767	5	PYHIN1	1	158911940	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	261524	158911940	90338681	74	127463											
ATP1A4	480	broad.mit.edu	37	chr1	160147225	160147225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccagccagaagcaagtcCcagcccccagccctcccctg	8	21	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160147225	A	A	160147225	1	1	148	0	1	0	0	0	0	0	0	0	1135	638	22	2		2	ATP1A4	1	160147225	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1235285	160147225	89103396	75	127464											
LY9	4063	broad.mit.edu	37	chr1	160784336	160784336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtctggttgtttaacaCatccatcattagcaaagaga	9	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160784336	A	A	160784336	3	1	148	1	0	0	0	0	1	0	0	0	9189	478	17	3	1003	3	LY9	1	160784336	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	637111	160784336	88466285	76	127465											
FCGR3A	2214	broad.mit.edu	37	chr1	161518815	161518815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaccagtccgcatgccaGctgaaactgcaagaaaaaag	8	12	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161518815	T	T	161518815	3	4	148	1	0	0	0	0	1	0	0	0	5841	971	34	3	733	3	FCGR3A	1	161518815	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	734479	161518815	87731806	77	127466											
OLFML2B	25903	broad.mit.edu	37	chr1	161953798	161953798	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgacctcctggctgaaGccctcatcgtccagggccgg	11	15	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161953798	T	T	161953798	2	4	148	1	0	0	0	0	0	0	0	1	10953	958	34	3		3	OLFML2B	1	161953798	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	434983	161953798	87296823	78	127467											
DUSP27	92235	broad.mit.edu	37	chr1	167082844	167082844	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgccttgatcactcgttgTtccccacttgttgctaaaat	6	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167082844	A	A	167082844	1	1	148	0	1	0	0	0	0	0	0	0	4864	1740	60	5		5	DUSP27	1	167082844	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	5129046	167082844	82167777	79	127468											
F5	2153	broad.mit.edu	37	chr1	169528535	169528535	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccctcagttagggtccCtatgaaaggaaagacatgtt	9	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169528535	A	A	169528535	5	1	148	1	0	0	0	0	0	0	1	0	5391	695	24	2	6172	2	F5	1	169528535	Splice_Site	SNP	C	TCGA-49-6767-01A-11D-1855-08	2445691	169528535	79722086	80	127469											
SELP	6403	broad.mit.edu	37	chr1	169578723	169578723	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgagacacacagaaaaacAttaccactgttacagtacct	6	11	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169578723	T	T	169578723	1	4	148	0	1	0	0	0	0	0	0	0	14132	232	8	5		5	SELP	1	169578723	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	50188	169578723	79671898	81	127470											
BAT2L2	23215	broad.mit.edu	37	chr1	171561168	171561168	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgctgtaccagtgaaaacGaggctttgcaagcttgtacc	11	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171561168	A	A	171561168	1	1	148	0	1	0	0	0	0	0	0	0	1326	1073	37	4		4	BAT2L2	1	171561168	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	1982445	171561168	77689453	82	127471											
ANKRD45	339416	broad.mit.edu	37	chr1	173616126	173616126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttccaaacgaccccaggCtgcagcacaatgtaagagtg	10	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173616126	A	A	173616126	3	1	148	1	0	0	0	0	1	0	0	0	673	797	28	3	461	3	ANKRD45	1	173616126	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2054958	173616126	75634495	83	127472											
DARS2	55157	broad.mit.edu	37	chr1	173800762	173800762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctttgaaattaagaacttCgtgaaggtaccaacctctgt	7	10	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173800762	A	A	173800762	3	1	148	1	0	0	0	0	1	0	0	0	4275	883	31	3	504	3	DARS2	1	173800762	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	184636	173800762	75449859	84	127473											
SERPINC1	462	broad.mit.edu	37	chr1	173878765	173878765	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccttcaaactgaagcCgtcctcaatgcggaagcggg	11	13	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173878765	T	T	173878765	3	4	148	1	0	0	0	0	1	0	0	0	14222	652	23	4	328	4	SERPINC1	1	173878765	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	78003	173878765	75371856	85	127474											
TNN	63923	broad.mit.edu	37	chr1	175087663	175087663	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgcactctggcacctgttCatagtgcatattggtcagca	9	11	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175087663	A	A	175087663	1	1	148	0	1	0	0	0	0	0	0	0	16446	841	29	3		3	TNN	1	175087663	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1208898	175087663	74162958	86	127475											
TNN	63923	broad.mit.edu	37	chr1	175113401	175113401	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagagagcggtgactacctGtgacatgactggctgcatct	13	9	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175113401	A	A	175113401	1	1	148	0	1	0	0	0	0	0	0	0	16446	1392	48	4		4	TNN	1	175113401	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	25738	175113401	74137220	87	127476											
TNR	7143	broad.mit.edu	37	chr1	175355112	175355112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctgtgatgacaccaccGgttggctccacccctctttc	8	16	1	2	rs138725581	by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175355112	T	T	175355112	1	4	148	0	1	0	0	0	0	0	0	0	16461	1131	39	1		1	TNR	1	175355112	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	241711	175355112	73895509	88	127477											
TNR	7143	broad.mit.edu	37	chr1	175365812	175365813	+	Missense_Mutation	DNP	GG	CT	CT													atctccaggcacccgctgctGgagctggaggccccccaggg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	175365813	CT	CT	175365812	3	2	148	1	0	0	0	0	1	0	0	0	16461	1357	47	4	3044	4	TNR	1	175365812	Missense_Mutation	DNP	GG	TCGA-49-6767-01A-11D-1855-08	10700	175365812	73884809	89	127478											
C1orf125	126859	broad.mit.edu	37	chr1	179380264	179380264	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaattaaatgaagctgtttCttaattgtttttatagaata	5	2	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179380264	T	T	179380264	1	4	148	0	1	0	0	0	0	0	0	0	2013	928	32	4		4	C1orf125	1	179380264	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4014452	179380264	69870357	90	127479											
CACNA1E	777	broad.mit.edu	37	chr1	181708263	181708263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcttggctcactgtggCtgttcatatccttctgcaga	8	11	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181708263	A	A	181708263	1	1	148	0	1	0	0	0	0	0	0	0	2568	812	28	3		3	CACNA1E	1	181708263	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2327999	181708263	67542358	91	127480											
CACNA1E	777	broad.mit.edu	37	chr1	181725312	181725312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgactcaagatgaacaagGctcacgctttgttattgtat	9	8	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181725312	T	T	181725312	1	4	148	0	1	0	0	0	0	0	0	0	2568	1218	42	3		3	CACNA1E	1	181725312	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	17049	181725312	67525309	92	127481											
RGS8	85397	broad.mit.edu	37	chr1	182638801	182638801	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatacaggcatcagcttacGgttaacccttgggctggtat	10	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182638801	T	T	182638801	1	4	148	0	1	0	0	0	0	0	0	0	13421	1131	39	1		1	RGS8	1	182638801	5'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	913489	182638801	66611820	93	127482											
FAM129A	116496	broad.mit.edu	37	chr1	184853655	184853655	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcatgagccaccgcacttGgctcatctgtggctctttct	10	13	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184853655	A	A	184853655	1	1	148	0	1	0	0	0	0	0	0	0	5482	1363	47	4		4	FAM129A	1	184853655	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2214854	184853655	64396966	94	127483											
TPR	7175	broad.mit.edu	37	chr1	186344160	186344160	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgcaacaccgccgccaTgtcggtggggccagggaccc	14	15	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186344160	A	A	186344160	3	1	148	1	0	0	0	0	1	0	0	0	16540	1464	51	5	7294	5	TPR	1	186344160	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1490505	186344160	62906461	95	127484											
KCNT2	343450	broad.mit.edu	37	chr1	196274434	196274434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgaatctcatgttggcgGggtgagttagctctgtgata	14	6	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196274434	T	T	196274434	3	4	148	1	0	0	0	0	1	0	0	0	8162	1232	43	2	910	2	KCNT2	1	196274434	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	9930274	196274434	52976187	96	127485											
DENND1B	163486	broad.mit.edu	37	chr1	197522226	197522226	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgcatttagttttgccAgtcgaccatcgataaactag	7	10	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197522226	T	T	197522226	3	4	148	1	0	0	0	0	1	0	0	0	4467	188	7	5	1234	5	DENND1B	1	197522226	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	1247792	197522226	51728395	97	127486											
PTPRC	5788	broad.mit.edu	37	chr1	198668779	198668779	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacacgcagacattcagcGgctccgccgccaatgcaaaa	9	15	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198668779	T	T	198668779	3	4	148	1	0	0	0	0	1	0	0	0	12905	1116	39	1	404	1	PTPRC	1	198668779	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1146553	198668779	50581842	98	127487											
IGFN1	91156	broad.mit.edu	37	chr1	201195307	201195307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggttgcgctctgcaatgCagtgggatgcacccaagcat	15	10	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201195307	A	A	201195307	1	1	148	0	1	0	0	0	0	0	0	0	7660	725	25	3		3	IGFN1	1	201195307	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2526528	201195307	48055314	99	127488											
PKP1	5317	broad.mit.edu	37	chr1	201291303	201291304	+	Intron	INS	-	C	C													ggggcctgccccatcaagcaINScccccccaggagccactgcc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201291304	C	C	201291303	6	5	148	0	1	1	1	0	0	0	0	0	12079	174	6	0		0	PKP1	1	201291303	Intron	INS	-	TCGA-49-6767-01A-11D-1855-08	95996	201291303	47959318	100	127489											
KDM5B	10765	broad.mit.edu	37	chr1	202702652	202702652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgctgggctctgtgctgCcagttcacggttctttcaat	11	10	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202702652	A	A	202702652	3	1	148	1	0	0	0	0	1	0	0	0	8204	740	26	3	868	3	KDM5B	1	202702652	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1411349	202702652	46547969	101	127490											
LAX1	54900	broad.mit.edu	37	chr1	203743121	203743121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgtgggaacctcactccctCggcacactgcatcaatgtca	9	14	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203743121	T	T	203743121	3	4	148	1	0	0	0	0	1	0	0	0	8720	893	31	4	572	4	LAX1	1	203743121	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1040469	203743121	45507500	102	127491											
CNTN2	6900	broad.mit.edu	37	chr1	205036280	205036281	+	Missense_Mutation	DNP	CC	AT	AT													tgcacaggtgctgggcctcaCcccctggatggactatgagt							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	205036281	AT	AT	205036280	3	1	148	1	0	0	0	0	1	0	0	0	3673	507	18	3	2085	3	CNTN2	1	205036280	Missense_Mutation	DNP	CC	TCGA-49-6767-01A-11D-1855-08	1293159	205036280	44214341	103	127492											
CDK18	5129	broad.mit.edu	37	chr1	205498423	205498423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccctgggcctcacgcagGccctccccaccctctctcgt	9	21	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205498423	T	T	205498423	1	4	148	0	1	0	0	0	0	0	0	0	3164	1218	42	3		3	CDK18	1	205498423	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	462143	205498423	43752198	104	127493											
DTL	51514	broad.mit.edu	37	chr1	212245479	212245479	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaccagaactctaccttttAtgtaaaatccagccttagtc	4	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212245479	C	C	212245479	3	2	148	1	0	0	0	0	1	0	0	0	4827	449	16	5	1001	5	DTL	1	212245479	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	6747056	212245479	37005142	105	127494											
CENPF	1063	broad.mit.edu	37	chr1	214836865	214836865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaaaacttagtgacataGtgctttatttttcatgttgt	6	4	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214836865	T	T	214836865	1	4	148	0	1	0	0	0	0	0	0	0	3261	1044	36	3		3	CENPF	1	214836865	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2591386	214836865	34413756	106	127495											
USH2A	7399	broad.mit.edu	37	chr1	216262525	216262525	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgtttatacatgcatatCtacaaataaacacacacata	2	8	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216262525	T	T	216262525	1	4	148	0	1	0	0	0	0	0	0	0	17162	928	32	4		4	USH2A	1	216262525	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1425660	216262525	32988096	107	127496											
ESRRG	2104	broad.mit.edu	37	chr1	216737622	216737622	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggtcggccaagtcacacagTgtagtgagggctttgatgtc	14	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216737622	A	A	216737622	2	1	148	1	0	0	0	0	0	0	0	1	5304	1683	59	5		5	ESRRG	1	216737622	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	475097	216737622	32512999	108	127497											
DISP1	84976	broad.mit.edu	37	chr1	223164132	223164132	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagcctaaaatcatctccAaatattgtgtattttaatac	3	7	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223164132	T	T	223164132	1	4	148	0	1	0	0	0	0	0	0	0	4579	145	5	5		5	DISP1	1	223164132	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	6426510	223164132	26086489	109	127498											
CDC42BPA	8476	broad.mit.edu	37	chr1	227216981	227216981	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaataataaatcaaaaTatagttttattgattaatca	4	2	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227216981	C	C	227216981	1	2	148	0	1	0	0	0	0	0	0	0	3102	1421	49	5		5	CDC42BPA	1	227216981	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	4052849	227216981	22033640	110	127499											
KIAA1804	84451	broad.mit.edu	37	chr1	233514643	233514643	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgacttttgctgtaaaatgAtactacagtgtatgtactta	7	5	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233514643	T	T	233514643	1	4	148	0	1	0	0	0	0	0	0	0	8329	348	12	5		5	KIAA1804	1	233514643	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	6297662	233514643	15735978	111	127500											
LYST	1130	broad.mit.edu	37	chr1	235969162	235969162	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtctcactttcttgacttgTaaatagctttgcttcctcgg	8	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235969162	C	C	235969162	3	2	148	1	0	0	0	0	1	0	0	0	9216	1638	57	5	8323	5	LYST	1	235969162	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	2454519	235969162	13281459	112	127501											
HEATR1	55127	broad.mit.edu	37	chr1	236714074	236714074	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttgtaaagaagtgataAaacatttgtaagtaatccaa	7	3	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236714074	C	C	236714074	1	2	148	0	1	0	0	0	0	0	0	0	7094	29	1	5		5	HEATR1	1	236714074	3'UTR	SNP	A	TCGA-49-6767-01A-11D-1855-08	744912	236714074	12536547	113	127502											
RYR2	6262	broad.mit.edu	37	chr1	237608538	237608538	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctaatttgtatagggagCtgtgcatatgattttatctg	11	4	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237608538	G	G	237608538	1	3	148	0	1	0	0	0	0	0	0	0	13880	812	28	4		4	RYR2	1	237608538	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	894464	237608538	11642083	114	127503											
RYR2	6262	broad.mit.edu	37	chr1	237801626	237801626	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taatgagttttcagccaaggGataactctttgttaatcatg	8	6	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237801626	A	A	237801626	1	1	148	0	1	0	0	0	0	0	0	0	13880	1189	41	4		4	RYR2	1	237801626	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	193088	237801626	11448995	115	127504											
RYR2	6262	broad.mit.edu	37	chr1	237886367	237886367	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggactcttcctatctttaGattgtaaccttgtttttaga	7	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237886367	T	T	237886367	1	4	148	0	1	0	0	0	0	0	0	0	13880	957	33	3		3	RYR2	1	237886367	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	84741	237886367	11364254	116	127505											
RYR2	6262	broad.mit.edu	37	chr1	237944870	237944870	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcatattttcaggattcCagtcaaattgagctattaaa	6	6	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237944870	A	A	237944870	2	1	148	1	0	0	0	0	0	0	0	1	13880	581	21	2		2	RYR2	1	237944870	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	58503	237944870	11305751	117	127506											
RYR2	6262	broad.mit.edu	37	chr1	237965074	237965074	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtcttgtcccattgaatGtgaaggccgtcaggctctcg	11	11	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237965074	A	A	237965074	1	1	148	0	1	0	0	0	0	0	0	0	13880	1392	48	4		4	RYR2	1	237965074	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	20204	237965074	11285547	118	127507											
ZP4	57829	broad.mit.edu	37	chr1	238048492	238048492	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagggcctgtttctccacTgtagggttcacaaagctgaa	11	10	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238048492	A	A	238048492	2	1	148	1	0	0	0	0	0	0	0	1	18347	1567	55	5		5	ZP4	1	238048492	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	83418	238048492	11202129	119	127508											
FMN2	56776	broad.mit.edu	37	chr1	240497408	240497409	+	Splice_Site	DNP	GG	TT	TT													atggggttttttgttcattaGgatgctggaaaagaacagtg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	240497409	TT	TT	240497408	5	4	148	1	0	0	0	0	0	0	1	0	6008	1014	35	2	4694	2	FMN2	1	240497408	Splice_Site	DNP	GG	TCGA-49-6767-01A-11D-1855-08	2448916	240497408	8753213	120	127509											
SDCCAG8	10806	broad.mit.edu	37	chr1	243652408	243652408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctcctggagaggcagaGcctgtcggaagaggtggacc	16	10	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243652408	T	T	243652408	3	4	148	1	0	0	0	0	1	0	0	0	14072	971	34	3	2144	3	SDCCAG8	1	243652408	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3155000	243652408	5598213	121	127510											
KIF26B	55083	broad.mit.edu	37	chr1	245704255	245704255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accccggggctgggcaaggtAggaccatccgccgtccctgc	14	16	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245704255	T	T	245704255	1	4	148	0	1	0	0	0	0	0	0	0	8365	435	15	5		5	KIF26B	1	245704255	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2051847	245704255	3546366	122	127511											
NLRP3	114548	broad.mit.edu	37	chr1	247588623	247588623	+	Missense_Mutation	SNP	C	A	A													aagctgcagatccagcccagCcagctggaattgttctactg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588623	A	A	247588623	3	1	148	1	0	0	0	0	1	0	0	0	10573	738	26	3	1888	3	NLRP3	1	247588623	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1884368	247588623	1661998	123	127512	552	2									
NLRP3	114548	broad.mit.edu	37	chr1	247588625	247588625	+	Missense_Mutation	SNP	A	G	G													gctgcagatccagcccagccAgctggaattgttctactgtt					rs104895385		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247588625	G	G	247588625	3	3	148	1	0	0	0	0	1	0	0	0	10573	188	7	5	1890	5	NLRP3	1	247588625	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	2	247588625	1661996	124	127513	552	2									
NLRP3	114548	broad.mit.edu	37	chr1	247607377	247607377	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcgaggcaacactctcGgagacaaggggatcaaacta	11	11	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247607377	T	T	247607377	4	4	148	1	0	0	0	0	0	1	0	0	10573	1117	39	1	2799	1	NLRP3	1	247607377	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	18752	247607377	1643244	125	127514											
OR1C1	26188	broad.mit.edu	37	chr1	247921238	247921238	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctattaggacagtatgcagGagggcgtggaggtaagtaac	16	5	0	0	rs41304161	by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247921238	T	T	247921238	2	4	148	1	0	0	0	0	0	0	0	1	11046	1161	41	3		3	OR1C1	1	247921238	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	313861	247921238	1329383	126	127515											
OR2L13	284521	broad.mit.edu	37	chr1	248100035	248100035	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgttattctccttcgGgaactcaagggttttcctgc	10	10	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248100035	T	T	248100035	1	4	148	0	1	0	0	0	0	0	0	0	11100	1247	43	2		2	OR2L13	1	248100035	5'Flank	SNP	G	TCGA-49-6767-01A-11D-1855-08	178797	248100035	1150586	127	127516											
OR2AK2	391191	broad.mit.edu	37	chr1	248128777	248128777	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgtcgtcattgccacCctctttacagttgctctgac	6	14	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248128777	A	A	248128777	2	1	148	1	0	0	0	0	0	0	0	1	11080	610	22	2		2	OR2AK2	1	248128777	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	28742	248128777	1121844	128	127517											
OR2L13	284521	broad.mit.edu	37	chr1	248246930	248246930	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacttagagtcatttgacaCtagatcatcttgacctgtgg	9	8	3	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248246930	G	G	248246930	1	3	148	0	1	0	0	0	0	0	0	0	11100	580	20	4		4	OR2L13	1	248246930	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	118153	248246930	1003691	129	127518											
OR2L13	284521	broad.mit.edu	37	chr1	248247835	248247835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatgaagaggacttggtGggctctggtgtggttaaaga	15	5	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247835	T	T	248247835	1	4	148	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248247835	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	905	248247835	1002786	130	127519											
OR2T33	391195	broad.mit.edu	37	chr1	248436317	248436317	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgacacaaccttgtcatggTtagtggacctatgggatttg	11	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436317	A	A	248436317	3	1	148	1	0	0	0	0	1	0	0	0	11118	1725	60	5	165	5	OR2T33	1	248436317	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	188482	248436317	814304	131	127520											
OR2T4	127074	broad.mit.edu	37	chr1	248525781	248525781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagctcctaccacacccCtgagaaggacatgatggtat	8	15	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525781	A	A	248525781	3	1	148	1	0	0	0	0	1	0	0	0	11121	681	24	2	901	2	OR2T4	1	248525781	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	89464	248525781	724840	132	127521											
OR2T3	343173	broad.mit.edu	37	chr1	248636972	248636972	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctgtgggatccagatgttCttctacctgaccctggctgg	13	11	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248636972	G	G	248636972	3	3	148	1	0	0	0	0	1	0	0	0	11117	912	32	4	323	4	OR2T3	1	248636972	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	111191	248636972	613649	133	127522											
SNTG2	54221	broad.mit.edu	37	chr2	953385	953385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcttccggcacatggaaGgcgagactggtactgagact	13	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	953385	T	T	953385	1	4	148	0	1	0	0	0	0	0	0	0	14989	1015	35	2		2	SNTG2	2	953385	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08		953385	242245988	134	127523											
TPO	7173	broad.mit.edu	37	chr2	1488335	1488335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctcctctggtatcctgGgcctcactgagatgcttttc	9	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1488335	T	T	1488335	1	4	148	0	1	0	0	0	0	0	0	0	16534	1247	43	2		2	TPO	2	1488335	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	534950	1488335	241711038	135	127524											
MYT1L	23040	broad.mit.edu	37	chr2	1921221	1921222	+	Intron	INS	-	G	G													aaagaaataaagcaggtgtcINSgggggctaggctgtgacatc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1921222	G	G	1921221	6	5	148	0	1	1	1	0	0	0	0	0	10201	899	31	0		0	MYT1L	2	1921221	Intron	INS	-	TCGA-49-6767-01A-11D-1855-08	432886	1921221	241278152	136	127525											
RSAD2	91543	broad.mit.edu	37	chr2	7035912	7035912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatgaattttctagatgCgctttctgaactgtagaaag	9	5	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7035912	A	A	7035912	3	1	148	1	0	0	0	0	1	0	0	0	13806	768	27	3	947	3	RSAD2	2	7035912	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	5114691	7035912	236163461	137	127526											
ROCK2	9475	broad.mit.edu	37	chr2	11484250	11484250	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcattttccccgtcggcgGgggccggctcatgccgccac	15	16	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11484250	A	A	11484250	3	1	148	1	0	0	0	0	1	0	0	0	13629	1232	43	4	4285	4	ROCK2	2	11484250	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4448338	11484250	231715123	138	127527											
MYCN	4613	broad.mit.edu	37	chr2	16082194	16082194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggcgagccgatgccgaGctgctccacgtccaccatgc	14	15	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16082194	T	T	16082194	3	4	148	1	0	0	0	0	1	0	0	0	10115	971	34	3	10	3	MYCN	2	16082194	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4597944	16082194	227117179	139	127528											
RAD51AP2	729475	broad.mit.edu	37	chr2	17696481	17696481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcttcctctgatctacttgGataacaactctcattaggaa	5	10	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17696481	T	T	17696481	3	4	148	1	0	0	0	0	1	0	0	0	13095	1174	41	3	289	3	RAD51AP2	2	17696481	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1614287	17696481	225502892	140	127529											
ITSN2	50618	broad.mit.edu	37	chr2	24443819	24443819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcctcctcacctcgaCgacgagctgaaggtcagcca	10	16	2	1	rs150580767		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24443819	A	A	24443819	3	1	148	1	0	0	0	0	1	0	0	0	7997	536	19	3	1494	3	ITSN2	2	24443819	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	6747338	24443819	218755554	141	127530											
POMC	5443	broad.mit.edu	37	chr2	25387719	25387719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaaaacaatgttggccaCtcaccaggaaggaccttgag	11	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25387719	A	A	25387719	1	1	148	0	1	0	0	0	0	0	0	0	12337	580	20	3		3	POMC	2	25387719	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	943900	25387719	217811654	142	127531											
FAM179A	165186	broad.mit.edu	37	chr2	29245179	29245179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacagcagtgactggtgaGgagatgcttccaccacgtgc	12	11	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29245179	T	T	29245179	1	4	148	0	1	0	0	0	0	0	0	0	5550	1015	35	2		2	FAM179A	2	29245179	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3857460	29245179	213954194	143	127532											
ALK	238	broad.mit.edu	37	chr2	29498008	29498008	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttggtgaattttccccGggtttcagctccttgtttgg	11	9	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29498008	C	C	29498008	2	2	148	1	0	0	0	0	0	0	0	1	525	1103	39	4		4	ALK	2	29498008	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	252829	29498008	213701365	144	127533											
ALK	238	broad.mit.edu	37	chr2	29498359	29498359	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgcgaccatctgcagccaGaacctgtacacatcaagagg	9	13	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29498359	A	A	29498359	2	1	148	1	0	0	0	0	0	0	0	1	525	933	33	4		4	ALK	2	29498359	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	351	29498359	213701014	145	127534											
LTBP1	4052	broad.mit.edu	37	chr2	33246225	33246225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcccagatgaccttaaCcctcaagccgaagccttcag	9	14	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33246225	A	A	33246225	3	1	148	1	0	0	0	0	1	0	0	0	9160	507	18	3	825	3	LTBP1	2	33246225	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3747866	33246225	209953148	146	127535											
LTBP1	4052	broad.mit.edu	37	chr2	33622196	33622196	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagcttctgccctttcctttCcaggttttctaaatagcttt	5	11	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33622196	A	A	33622196	1	1	148	0	1	0	0	0	0	0	0	0	9160	870	30	3		3	LTBP1	2	33622196	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	375971	33622196	209577177	147	127536											
ABCG8	64241	broad.mit.edu	37	chr2	44073245	44073245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacagaagttgctgaagcCctctgaaccattcagctctc	8	12	3	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44073245	A	A	44073245	1	1	148	0	1	0	0	0	0	0	0	0	72	638	22	2		2	ABCG8	2	44073245	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	10451049	44073245	199126128	148	127537											
FSHR	2492	broad.mit.edu	37	chr2	49381376	49381376	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgcacaaatgccagccatgCagttgttccccctccctctg	7	16	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49381376	G	G	49381376	1	3	148	0	1	0	0	0	0	0	0	0	6133	725	25	4		4	FSHR	2	49381376	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	5308131	49381376	193817997	149	127538											
PSME4	23198	broad.mit.edu	37	chr2	54114547	54114547	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactcagggacatgaggcgaTatggttggtgtggtatttgg	16	4	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54114547	A	A	54114547	2	1	148	1	0	0	0	0	0	0	0	1	12815	1396	49	5		5	PSME4	2	54114547	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	4733171	54114547	189084826	150	127539											
SPTBN1	6711	broad.mit.edu	37	chr2	54855127	54855127	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtccatggcagactagAgggaaggcatagcttcattg	15	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54855127	G	G	54855127	1	3	148	0	1	0	0	0	0	0	0	0	15237	319	11	5		5	SPTBN1	2	54855127	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	740580	54855127	188344246	151	127540											
CCDC85A	114800	broad.mit.edu	37	chr2	56420624	56420624	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggctggggaactcagtagAgagttacgaatgatgatgga	16	4	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56420624	C	C	56420624	1	2	148	0	1	0	0	0	0	0	0	0	2887	319	11	5		5	CCDC85A	2	56420624	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1565497	56420624	186778749	152	127541											
ZNF638	27332	broad.mit.edu	37	chr2	71577285	71577285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagttttcacatgctgatGcccagaagatgaagagactt	9	8	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71577285	T	T	71577285	3	4	148	1	0	0	0	0	1	0	0	0	18182	1319	46	3	1203	3	ZNF638	2	71577285	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	15156661	71577285	171622088	153	127542											
DYSF	8291	broad.mit.edu	37	chr2	71778163	71778163	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctctgattgccacttgtgTctcccagtggatgactacct	8	14	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71778163	A	A	71778163	1	1	148	0	1	0	0	0	0	0	0	0	4899	1682	58	5		5	DYSF	2	71778163	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	200878	71778163	171421210	154	127543											
CYP26B1	56603	broad.mit.edu	37	chr2	72359642	72359642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctcgctccgcgcctggCtgaagcgatcggggtcgaac	14	14	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72359642	A	A	72359642	3	1	148	1	0	0	0	0	1	0	0	0	4189	797	28	3	289	3	CYP26B1	2	72359642	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	581479	72359642	170839731	155	127544											
C2orf78	388960	broad.mit.edu	37	chr2	74043796	74043796	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctaggccatcagcctacAaaacatcatcttgttcttct	4	13	6	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74043796	G	G	74043796	3	3	148	1	0	0	0	0	1	0	0	0	2217	131	5	5	2456	5	C2orf78	2	74043796	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	1684154	74043796	169155577	156	127545											
MOGS	7841	broad.mit.edu	37	chr2	74690191	74690191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaagagaaggcagtgggCattataaagagaaatacaaa	10	4	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74690191	A	A	74690191	1	1	148	0	1	0	0	0	0	0	0	0	9791	725	25	3		3	MOGS	2	74690191	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	646395	74690191	168509182	157	127546											
ST3GAL5	8869	broad.mit.edu	37	chr2	86071714	86071714	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcagttgttagtcatccttCtaggggaggggagaaagcat	14	6	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86071714	T	T	86071714	1	4	148	0	1	0	0	0	0	0	0	0	15336	928	32	4		4	ST3GAL5	2	86071714	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	11381523	86071714	157127659	158	127547											
SMYD1	150572	broad.mit.edu	37	chr2	88390404	88390404	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggagactaattgttctgTgtccagactccctaagcatc	8	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88390404	G	G	88390404	1	3	148	0	1	0	0	0	0	0	0	0	14935	1711	59	5		5	SMYD1	2	88390404	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	2318690	88390404	154808969	159	127548											
TMEM131	23505	broad.mit.edu	37	chr2	98392318	98392318	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtacctccttgaggagCggttctgtgtcagggttgga	15	10	2	1	rs61745536	by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98392318	T	T	98392318	2	4	148	1	0	0	0	0	0	0	0	1	16167	755	27	4		4	TMEM131	2	98392318	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	10001914	98392318	144807055	160	127549											
TBC1D8	11138	broad.mit.edu	37	chr2	101648716	101648716	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatacacaggaggaggaaGggggtctgtttaccgatcac	14	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101648716	A	A	101648716	1	1	148	0	1	0	0	0	0	0	0	0	15747	1015	35	4		4	TBC1D8	2	101648716	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3256398	101648716	141550657	161	127550											
SLC9A2	6549	broad.mit.edu	37	chr2	103317507	103317507	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatccagtattaatttaTtgaaagtttctttatttaca	4	5	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103317507	C	C	103317507	1	2	148	0	1	0	0	0	0	0	0	0	14826	1508	52	5		5	SLC9A2	2	103317507	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1668791	103317507	139881866	162	127551											
EDAR	10913	broad.mit.edu	37	chr2	109527343	109527343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgagcagccaggctctcCgacagggggagttgacggag	18	9	1	2	rs114808659	by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109527343	A	A	109527343	1	1	148	0	1	0	0	0	0	0	0	0	4945	667	23	1		1	EDAR	2	109527343	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	6209836	109527343	133672030	163	127552											
NPHP1	4867	broad.mit.edu	37	chr2	110917777	110917777	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattcctggaagaggaatcAttttacagctccataatgtc	7	9	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110917777	C	C	110917777	3	2	148	1	0	0	0	0	1	0	0	0	10674	217	8	5	1063	5	NPHP1	2	110917777	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	1390434	110917777	132281596	164	127553											
ZC3H6	376940	broad.mit.edu	37	chr2	113089652	113089652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttagtttgtatgaccctaggGatcacggttcatcatccaca	8	10	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113089652	T	T	113089652	3	4	148	1	0	0	0	0	1	0	0	0	17697	1174	41	3	3203	3	ZC3H6	2	113089652	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2171875	113089652	130109721	165	127554											
SLC20A1	6574	broad.mit.edu	37	chr2	113417307	113417307	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatccttacagcctgcttTgggtcattcgcccatggtgg	11	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113417307	C	C	113417307	2	2	148	1	0	0	0	0	0	0	0	1	14551	1809	63	5		5	SLC20A1	2	113417307	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	327655	113417307	129782066	166	127555											
IL1B	3553	broad.mit.edu	37	chr2	113591174	113591174	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcggagagagcgagggaggGagcctggtgaggtggtcctg	22	6	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113591174	A	A	113591174	1	1	148	0	1	0	0	0	0	0	0	0	7721	1189	41	4		4	IL1B	2	113591174	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	173867	113591174	129608199	167	127556											
MARCO	8685	broad.mit.edu	37	chr2	119728884	119728884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagttgcagctgagcatctGgctctttccaaggactcttt	9	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119728884	T	T	119728884	1	4	148	0	1	0	0	0	0	0	0	0	9403	1363	47	2		2	MARCO	2	119728884	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6137710	119728884	123470489	168	127557											
STEAP3	55240	broad.mit.edu	37	chr2	120002952	120002952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtagcactcggtgaacaCctgctgggtgaatgtctgac	14	9	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120002952	A	A	120002952	1	1	148	0	1	0	0	0	0	0	0	0	15397	522	18	3		3	STEAP3	2	120002952	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	274068	120002952	123196421	169	127558											
PTPN4	5775	broad.mit.edu	37	chr2	120725423	120725423	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttttttagtgctggaatcGgaagaactggggttcttatt	11	5	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120725423	A	A	120725423	3	1	148	1	0	0	0	0	1	0	0	0	12898	1117	39	4	2667	4	PTPN4	2	120725423	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	722471	120725423	122473950	170	127559											
GLI2	2736	broad.mit.edu	37	chr2	121554950	121554950	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcaagaagccaaaagtggGatcctggaggccgctggctt	14	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121554950	T	T	121554950	2	4	148	1	0	0	0	0	0	0	0	1	6502	1161	41	3		3	GLI2	2	121554950	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	829527	121554950	121644423	171	127560											
GLI2	2736	broad.mit.edu	37	chr2	121708821	121708821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccattgtctctgcaggcCccctgccctcagcggcagcc	10	19	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121708821	A	A	121708821	3	1	148	1	0	0	0	0	1	0	0	0	6502	623	22	2	267	2	GLI2	2	121708821	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	153871	121708821	121490552	172	127561											
MYO7B	4648	broad.mit.edu	37	chr2	128346070	128346070	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattcaacttggagttagcAgagaccaagctgggccatgg	12	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128346070	G	G	128346070	2	3	148	1	0	0	0	0	0	0	0	1	10177	175	7	5		5	MYO7B	2	128346070	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	6637249	128346070	114853303	173	127562											
WDR33	55339	broad.mit.edu	37	chr2	128466954	128466954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagacagcccagccccccGggagacatgagctggaaaga	14	12	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128466954	T	T	128466954	1	4	148	0	1	0	0	0	0	0	0	0	17414	1131	39	1		1	WDR33	2	128466954	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	120884	128466954	114732419	174	127563											
PLEKHB2	55041	broad.mit.edu	37	chr2	131883346	131883346	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtactattttgaagcgctggAagaagaactggtttgatctg	12	5	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131883346	T	T	131883346	4	4	148	1	0	0	0	0	0	1	0	0	12160	247	9	5	64	5	PLEKHB2	2	131883346	Nonsense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	3416392	131883346	111316027	175	127564											
PLEKHB2	55041	broad.mit.edu	37	chr2	131955526	131955526	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagctcctggtctccaggtCtgtaggtttttctttaaatt	8	9	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131955526	G	G	131955526	1	3	148	0	1	0	0	0	0	0	0	0	12160	928	32	4		4	PLEKHB2	2	131955526	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	72180	131955526	111243847	176	127565											
POTEE	445582	broad.mit.edu	37	chr2	132020885	132020885	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaagaaatcatgatatgtCaatctattgagtgctaacta	7	6	3	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132020885	T	T	132020885	1	4	148	0	1	0	0	0	0	0	0	0	12360	841	29	4		4	POTEE	2	132020885	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	65359	132020885	111178488	177	127566											
NCKAP5	344148	broad.mit.edu	37	chr2	133541592	133541592	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacggacctgcctggagggGgcggaggggaaggggatttc	21	7	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133541592	T	T	133541592	3	4	148	1	0	0	0	0	1	0	0	0	10318	1232	43	2	2965	2	NCKAP5	2	133541592	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1520707	133541592	109657781	178	127567											
THSD7B	80731	broad.mit.edu	37	chr2	138169390	138169390	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgctttcgagcagtagcCtgttctgataaaaatggaag	11	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138169390	A	A	138169390	2	1	148	1	0	0	0	0	0	0	0	1	16003	668	24	2		2	THSD7B	2	138169390	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	4627798	138169390	105029983	179	127568											
LRP1B	53353	broad.mit.edu	37	chr2	141264282	141264282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actaagaaatgtgttgcttgTtgctttagttttttatttac	7	4	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141264282	C	C	141264282	1	2	148	0	1	0	0	0	0	0	0	0	9042	1740	60	5		5	LRP1B	2	141264282	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	3094892	141264282	101935091	180	127569											
LRP1B	53353	broad.mit.edu	37	chr2	141625343	141625343	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatgggaaaggtattcatgAcctcggatgatttctatcat	11	6	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141625343	T	T	141625343	2	4	148	1	0	0	0	0	0	0	0	1	9042	262	10	5		5	LRP1B	2	141625343	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	361061	141625343	101574030	181	127570											
LRP1B	53353	broad.mit.edu	37	chr2	141819597	141819597	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttattaccctaggagcgTtgtctaacaaaattgtactt	6	7	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141819597	A	A	141819597	1	1	148	0	1	0	0	0	0	0	0	0	9042	1740	60	5		5	LRP1B	2	141819597	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	194254	141819597	101379776	182	127571											
KYNU	8942	broad.mit.edu	37	chr2	143790928	143790928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccttcccacatctttgcGttttttcttgatctgtttgt	5	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143790928	T	T	143790928	1	4	148	0	1	0	0	0	0	0	0	0	8659	1160	40	3		3	KYNU	2	143790928	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1971331	143790928	99408445	183	127572											
CACNB4	785	broad.mit.edu	37	chr2	152717374	152717374	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaacaagccagtaaaaaTgttatggggctctccaagtg	10	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152717374	C	C	152717374	1	2	148	0	1	0	0	0	0	0	0	0	2581	1479	51	5		5	CACNB4	2	152717374	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	8926446	152717374	90481999	184	127573											
TANC1	85461	broad.mit.edu	37	chr2	160053090	160053090	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggcaaagtaatgctcagCtgtaaccttcccctactcct	7	13	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160053090	T	T	160053090	1	4	148	0	1	0	0	0	0	0	0	0	15663	812	28	4		4	TANC1	2	160053090	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	7335716	160053090	83146283	185	127574											
DPP4	1803	broad.mit.edu	37	chr2	162903857	162903857	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccataaaagcccacatctcGacttaactagaatgaatgta	6	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162903857	T	T	162903857	1	4	148	0	1	0	0	0	0	0	0	0	4769	1073	37	3		3	DPP4	2	162903857	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2850767	162903857	80295516	186	127575											
SCN7A	6332	broad.mit.edu	37	chr2	167322326	167322326	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtttccagttctgttgtgcAgggtttcattttcattctct	9	8	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167322326	T	T	167322326	3	4	148	1	0	0	0	0	1	0	0	0	14036	188	7	5	4288	5	SCN7A	2	167322326	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	4418469	167322326	75877047	187	127576											
G6PC2	57818	broad.mit.edu	37	chr2	169763212	169763212	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtgttttttggttgaTtcaaatcagtgtctgcatct	10	5	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169763212	G	G	169763212	3	3	148	1	0	0	0	0	1	0	0	0	6204	1493	52	5	493	5	G6PC2	2	169763212	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	2440886	169763212	73436161	188	127577											
LRP2	4036	broad.mit.edu	37	chr2	170063626	170063626	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagcccagaagaggtatcTgttcttgggatctacaacaa	10	9	4	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170063626	C	C	170063626	3	2	148	1	0	0	0	0	1	0	0	0	9043	1588	55	5	7527	5	LRP2	2	170063626	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	300414	170063626	73135747	189	127578											
TLK1	9874	broad.mit.edu	37	chr2	171910423	171910423	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtttcaagcaaacataAaactagattttactccaaat	4	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171910423	T	T	171910423	1	4	148	0	1	0	0	0	0	0	0	0	16066	29	1	5		5	TLK1	2	171910423	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1846797	171910423	71288950	190	127579											
DCAF17	80067	broad.mit.edu	37	chr2	172314679	172314679	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagatgcttttagagtaaggCacttctgtagattttggctc	11	6	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172314679	G	G	172314679	1	3	148	0	1	0	0	0	0	0	0	0	4302	725	25	4		4	DCAF17	2	172314679	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	404256	172314679	70884694	191	127580											
HAT1	8520	broad.mit.edu	37	chr2	172778896	172778896	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacgcctcctttaattggcTaacgtcacgctgggagtggg	12	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172778896	A	A	172778896	1	1	148	0	1	0	0	0	0	0	0	0	7030	1537	53	5		5	HAT1	2	172778896	5'Flank	SNP	T	TCGA-49-6767-01A-11D-1855-08	464217	172778896	70420477	192	127581											
SCRN3	79634	broad.mit.edu	37	chr2	175268882	175268882	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cataacaaccaagattgcccGggaacacccagacatgagaa	8	12	0	3	rs140532560		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175268882	A	A	175268882	3	1	148	1	0	0	0	0	1	0	0	0	14053	1116	39	4	607	4	SCRN3	2	175268882	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2489986	175268882	67930491	193	127582											
CHN1	1123	broad.mit.edu	37	chr2	175673516	175673516	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgtaagtacattaaccatAgagagaggcaaaggggaaac	11	6	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175673516	G	G	175673516	1	3	148	0	1	0	0	0	0	0	0	0	3393	435	15	5		5	CHN1	2	175673516	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	404634	175673516	67525857	194	127583											
PDE11A	50940	broad.mit.edu	37	chr2	178863362	178863362	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatttcagaataaattgagCtgctaatcgtttttccttag	7	6	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178863362	G	G	178863362	1	3	148	0	1	0	0	0	0	0	0	0	11725	812	28	4		4	PDE11A	2	178863362	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3189846	178863362	64336011	195	127584											
SESTD1	91404	broad.mit.edu	37	chr2	179981574	179981574	+	Intron	DEL	A	-	-													aactctttacttattgtatcAaaatgtcatttatacagaga							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179981574	-	-	179981574	6	5	148	0	1	1	0	1	0	0	0	0	14240	145	5	0		0	SESTD1	2	179981574	Intron	DEL	A	TCGA-49-6767-01A-11D-1855-08	1118212	179981574	63217799	196	127585											
NEUROD1	4760	broad.mit.edu	37	chr2	182543486	182543486	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctccttcttgtctgcctcGtgctcctcgtcctgagaact	7	16	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182543486	A	A	182543486	2	1	148	1	0	0	0	0	0	0	0	1	10443	1136	40	4		4	NEUROD1	2	182543486	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	2561912	182543486	60655887	197	127586											
ZNF804A	91752	broad.mit.edu	37	chr2	185802769	185802769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaacaaactgtctttccaCcctaacaatctccttccttc	2	15	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185802769	A	A	185802769	3	1	148	1	0	0	0	0	1	0	0	0	18299	506	18	3	2660	3	ZNF804A	2	185802769	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3259283	185802769	57396604	198	127587											
ZSWIM2	151112	broad.mit.edu	37	chr2	187692918	187692918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagttgatctcttgttgtcCtctcttattttagtggcagg	9	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187692918	A	A	187692918	3	1	148	1	0	0	0	0	1	0	0	0	18370	680	24	2	210	2	ZSWIM2	2	187692918	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1890149	187692918	55506455	199	127588											
DIRC1	116093	broad.mit.edu	37	chr2	189599658	189599658	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggcatttgtcagggtGggtggtcgggctgtttctct	15	9	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189599658	T	T	189599658	1	4	148	0	1	0	0	0	0	0	0	0	4573	1363	47	2		2	DIRC1	2	189599658	5'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	1906740	189599658	53599715	200	127589											
COL3A1	1281	broad.mit.edu	37	chr2	189856407	189856407	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtagggtccaagagggGctcctggtgagcgaggacgg	18	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189856407	C	C	189856407	3	2	148	1	0	0	0	0	1	0	0	0	3720	1203	42	4	960	4	COL3A1	2	189856407	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	256749	189856407	53342966	201	127590											
COL3A1	1281	broad.mit.edu	37	chr2	189866377	189866377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagacagtagctacttatgCttccctttttggcagttttg	8	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189866377	A	A	189866377	1	1	148	0	1	0	0	0	0	0	0	0	3720	812	28	3		3	COL3A1	2	189866377	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	9970	189866377	53332996	202	127591											
HIBCH	26275	broad.mit.edu	37	chr2	191159310	191159310	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagaaagcctttcctcctGctccctttataatgatcagg	6	13	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191159310	A	A	191159310	3	1	148	1	0	0	0	0	1	0	0	0	7167	1319	46	4	938	4	HIBCH	2	191159310	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1292933	191159310	52040063	203	127592											
SDPR	8436	broad.mit.edu	37	chr2	192700895	192700895	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttccccttccaccagagcGctggcgagggacgcttcgga	12	14	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192700895	A	A	192700895	2	1	148	1	0	0	0	0	0	0	0	1	14083	1078	38	4		4	SDPR	2	192700895	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1541585	192700895	50498478	204	127593											
SDPR	8436	broad.mit.edu	37	chr2	192701129	192701129	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttaatcttctctctcctCtctacagatacgatctttgt	3	12	6	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192701129	G	G	192701129	3	3	148	1	0	0	0	0	1	0	0	0	14083	912	32	4	483	4	SDPR	2	192701129	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	234	192701129	50498244	205	127594											
CLK1	1195	broad.mit.edu	37	chr2	201726036	201726036	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacttcttccacttctaccAgaagacttgctactatggtt	5	12	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201726036	G	G	201726036	2	3	148	1	0	0	0	0	0	0	0	1	3568	175	7	5		5	CLK1	2	201726036	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	9024907	201726036	41473337	206	127595											
ALS2CR12	130540	broad.mit.edu	37	chr2	202211450	202211450	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacttggagtgctgagatTtttccaaatcttctcttatt	7	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202211450	G	G	202211450	1	3	148	0	1	0	0	0	0	0	0	0	553	1856	64	5		5	ALS2CR12	2	202211450	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	485414	202211450	40987923	207	127596											
ADAM23	8745	broad.mit.edu	37	chr2	207436511	207436511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggggctcactgcagcgacGggccctgctgtaacaatacc	12	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207436511	T	T	207436511	3	4	148	1	0	0	0	0	1	0	0	0	245	1116	39	1	1693	1	ADAM23	2	207436511	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	5225061	207436511	35762862	208	127597											
ADAM23	8745	broad.mit.edu	37	chr2	207460940	207460940	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaattcgttgacactgttCcaatgcaccagtataacatt	6	10	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207460940	A	A	207460940	1	1	148	0	1	0	0	0	0	0	0	0	245	870	30	3		3	ADAM23	2	207460940	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	24429	207460940	35738433	209	127598											
CRYGB	1419	broad.mit.edu	37	chr2	209010407	209010407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggacagagcgagactcCgcctcaaaaaaaaaaaaaaa	10	8	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209010407	A	A	209010407	1	1	148	0	1	0	0	0	0	0	0	0	3947	667	23	1		1	CRYGB	2	209010407	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1549467	209010407	34188966	210	127599											
C2orf80	389073	broad.mit.edu	37	chr2	209030479	209030479	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggttttaagatgatgcttctCgtctgctcccagagaatcta	9	9	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209030479	A	A	209030479	1	1	148	0	1	0	0	0	0	0	0	0	2219	899	31	3		3	C2orf80	2	209030479	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	20072	209030479	34168894	211	127600											
C2orf80	389073	broad.mit.edu	37	chr2	209045986	209045986	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaaatcatagcttctcgttCtctacgatttggatatatgg	7	7	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209045986	G	G	209045986	3	3	148	1	0	0	0	0	1	0	0	0	2219	922	32	4	351	4	C2orf80	2	209045986	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	15507	209045986	34153387	212	127601											
PTH2R	5746	broad.mit.edu	37	chr2	209271877	209271877	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgcgacacctgttttcgCggagcctccggcggggactc	13	16	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209271877	T	T	209271877	1	4	148	0	1	0	0	0	0	0	0	0	12866	783	27	4		4	PTH2R	2	209271877	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	225891	209271877	33927496	213	127602											
CPS1	1373	broad.mit.edu	37	chr2	211456741	211456741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgatgagaaacgcaggGcttttaaaaataattgatac	10	4	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211456741	T	T	211456741	1	4	148	0	1	0	0	0	0	0	0	0	3855	1218	42	3		3	CPS1	2	211456741	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2184864	211456741	31742632	214	127603											
ERBB4	2066	broad.mit.edu	37	chr2	212522492	212522492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttacctagcatgttgtgGtaaagtggaatggcccgtcc	12	8	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212522492	T	T	212522492	3	4	148	1	0	0	0	0	1	0	0	0	5251	1261	44	3	2045	3	ERBB4	2	212522492	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1065751	212522492	30676881	215	127604											
IKZF2	22807	broad.mit.edu	37	chr2	213886733	213886733	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccatggtgactcatgacCtgcccagcagcctccatgct	8	17	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	213886733	G	G	213886733	3	3	148	1	0	0	0	0	1	0	0	0	7685	680	24	4	896	4	IKZF2	2	213886733	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1364241	213886733	29312640	216	127605											
TNS1	7145	broad.mit.edu	37	chr2	218713343	218713343	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgcactgtgaccatcctGgtttggcaattcatcgtcca	9	14	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218713343	A	A	218713343	4	1	148	1	0	0	0	0	0	1	0	0	16466	1357	47	4	3753	4	TNS1	2	218713343	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4826610	218713343	24486030	217	127606											
SLC23A3	151295	broad.mit.edu	37	chr2	220032797	220032797	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agactgagaaaagaactcctCccccagaaccttctgagcca	7	14	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220032797	A	A	220032797	1	1	148	0	1	0	0	0	0	0	0	0	14578	870	30	3		3	SLC23A3	2	220032797	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1319454	220032797	23166576	218	127607											
PTPRN	5798	broad.mit.edu	37	chr2	220164027	220164027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcgcagagatatttacCtgcttgttgggtcacatcag	12	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220164027	A	A	220164027	3	1	148	1	0	0	0	0	1	0	0	0	12915	695	24	2	1388	2	PTPRN	2	220164027	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	131230	220164027	23035346	219	127608											
IRS1	3667	broad.mit.edu	37	chr2	227662710	227662710	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggatggtctcgtgcaTgttctgggccaccacagagt	12	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227662710	G	G	227662710	3	3	148	1	0	0	0	0	1	0	0	0	7910	1464	51	5	2987	5	IRS1	2	227662710	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	7498683	227662710	15536663	220	127609											
MFF	56947	broad.mit.edu	37	chr2	228217347	228217347	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcggaatttgtgtgttgCagggcatgttgcatgtcgta	15	5	0	0	rs112530451		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228217347	T	T	228217347	1	4	148	0	1	0	0	0	0	0	0	0	9612	725	25	4		4	MFF	2	228217347	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	554637	228217347	14982026	221	127610											
SPHKAP	80309	broad.mit.edu	37	chr2	228883814	228883814	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggcgggaggctaccacTtggagccactgagcatgtca	14	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228883814	G	G	228883814	3	3	148	1	0	0	0	0	1	0	0	0	15166	1609	56	5	3370	5	SPHKAP	2	228883814	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	666467	228883814	14315559	222	127611											
SPHKAP	80309	broad.mit.edu	37	chr2	229046284	229046284	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaagaagcgggtcttaccTtggtaccgagagcagggagt	15	7	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229046284	A	A	229046284	3	1	148	1	0	0	0	0	1	0	0	0	15166	1623	56	5	5119	5	SPHKAP	2	229046284	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	162470	229046284	14153089	223	127612											
SP100	6672	broad.mit.edu	37	chr2	231311581	231311581	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagtgaagaagaagagaggGaggagaggtctggcctccaa	16	5	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231311581	T	T	231311581	4	4	148	1	0	0	0	0	0	1	0	0	15074	1175	41	3	505	3	SP100	2	231311581	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2265297	231311581	11887792	224	127613											
DGKD	8527	broad.mit.edu	37	chr2	234365975	234365975	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggtaccaaggaagatgatGtatgtatggggtgtgagcgg	19	3	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234365975	C	C	234365975	5	2	148	1	0	0	0	0	0	0	1	0	4507	1391	48	4	2687	4	DGKD	2	234365975	Splice_Site	SNP	G	TCGA-49-6767-01A-11D-1855-08	3054394	234365975	8833398	225	127614											
TRPM8	79054	broad.mit.edu	37	chr2	234891605	234891605	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagccctggaaccgctgctCttctccatggtccactgagg	11	14	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234891605	A	A	234891605	1	1	148	0	1	0	0	0	0	0	0	0	16717	928	32	3		3	TRPM8	2	234891605	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	525630	234891605	8307768	226	127615											
OTOS	150677	broad.mit.edu	37	chr2	241079554	241079554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggaccacccaggtgccGgttgggcccacccgacacca	13	16	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241079554	T	T	241079554	1	4	148	0	1	0	0	0	0	0	0	0	11403	1131	39	1		1	OTOS	2	241079554	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6187949	241079554	2119819	227	127616											
ANKMY1	51281	broad.mit.edu	37	chr2	241465583	241465583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggccacagagggccacCcacatgtgtgaccctcacag	13	14	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241465583	A	A	241465583	1	1	148	0	1	0	0	0	0	0	0	0	634	638	22	2		2	ANKMY1	2	241465583	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	386029	241465583	1733790	228	127617											
ING5	84289	broad.mit.edu	37	chr2	242662323	242662323	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcacttcccaccatggccTtcagtggtgcctgtgccctg	9	17	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242662323	G	G	242662323	1	3	148	0	1	0	0	0	0	0	0	0	7809	1624	56	5		5	ING5	2	242662323	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1196740	242662323	537050	229	127618											
CHL1	10752	broad.mit.edu	37	chr3	432380	432380	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatcaatcttctatgattaAcagatcctgatacagctcca	4	10	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	432380	T	T	432380	1	4	148	0	1	0	0	0	0	0	0	0	3380	58	2	5		5	CHL1	3	432380	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08		432380	197590050	230	127619											
IL5RA	3568	broad.mit.edu	37	chr3	3146489	3146489	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcataaaaatccatatAtaatgttctaatcgacagtt	4	7	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3146489	G	G	3146489	1	3	148	0	1	0	0	0	0	0	0	0	7770	464	16	5		5	IL5RA	3	3146489	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2714109	3146489	194875941	231	127620											
MTMR14	64419	broad.mit.edu	37	chr3	9726684	9726684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgggttttggggccttaGtaacagtttctatatgtgag	13	4	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9726684	T	T	9726684	1	4	148	0	1	0	0	0	0	0	0	0	10036	1044	36	3		3	MTMR14	3	9726684	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6580195	9726684	188295746	232	127621											
C3orf19	51244	broad.mit.edu	37	chr3	14709757	14709757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgatgtcttgctaatagGgctggcaatgtgaaaattag	11	5	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14709757	T	T	14709757	1	4	148	0	1	0	0	0	0	0	0	0	2234	1247	43	2		2	C3orf19	3	14709757	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	4983073	14709757	183312673	233	127622											
TRANK1	9881	broad.mit.edu	37	chr3	36871021	36871021	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagaaccacaggacccaaAgtgttacctgtccccacaat	6	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36871021	G	G	36871021	1	3	148	0	1	0	0	0	0	0	0	0	16578	87	3	5		5	TRANK1	3	36871021	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	22161264	36871021	161151409	234	127623											
SCN10A	6336	broad.mit.edu	37	chr3	38763677	38763677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagaacccactgatgcaGctccagggcctttggattgt	12	11	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38763677	T	T	38763677	1	4	148	0	1	0	0	0	0	0	0	0	14025	986	34	3		3	SCN10A	3	38763677	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1892656	38763677	159258753	235	127624											
ABHD5	51099	broad.mit.edu	37	chr3	43743643	43743643	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtaatttttggttgctctGagaatacttcccttctcaga	7	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43743643	T	T	43743643	1	4	148	0	1	0	0	0	0	0	0	0	85	1305	45	3		3	ABHD5	3	43743643	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	4979966	43743643	154278787	236	127625											
ZNF445	353274	broad.mit.edu	37	chr3	44496980	44496980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttactgtctgaagccgcCctcgctccctcgaagactgg	9	15	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44496980	A	A	44496980	3	1	148	1	0	0	0	0	1	0	0	0	18045	623	22	2	3057	2	ZNF445	3	44496980	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	753337	44496980	153525450	237	127626											
ZDHHC3	51304	broad.mit.edu	37	chr3	44986781	44986781	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatttcctttgggcactgCcccctgtaggaaagatgaaa	11	10	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44986781	T	T	44986781	3	4	148	1	0	0	0	0	1	0	0	0	17742	739	26	4	950	4	ZDHHC3	3	44986781	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	489801	44986781	153035649	238	127627											
SLC25A20	788	broad.mit.edu	37	chr3	48921537	48921537	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgataggggcagccattccCcgatatagccccgtgatgcc	11	13	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48921537	A	A	48921537	2	1	148	1	0	0	0	0	0	0	0	1	14597	610	22	2		2	SLC25A20	3	48921537	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	3934756	48921537	149100893	239	127628											
DALRD3	55152	broad.mit.edu	37	chr3	49055934	49055934	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgatccacaccggaccgcCtggccccagggccgcgttga	12	17	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49055934	G	G	49055934	3	3	148	1	0	0	0	0	1	0	0	0	4262	681	24	4	1615	4	DALRD3	3	49055934	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	134397	49055934	148966496	240	127629											
IQCF3	401067	broad.mit.edu	37	chr3	51864584	51864584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagagacggatccgtcagCggcggcaggccctgttgagg	17	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51864584	A	A	51864584	2	1	148	1	0	0	0	0	0	0	0	1	7879	759	27	3		3	IQCF3	3	51864584	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2808650	51864584	146157846	241	127630											
RRP9	9136	broad.mit.edu	37	chr3	51968721	51968721	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgctccaggcctggctctCcccgcagcccgtgagcttca	11	18	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51968721	G	G	51968721	3	3	148	1	0	0	0	0	1	0	0	0	13802	855	30	4	337	4	RRP9	3	51968721	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	104137	51968721	146053709	242	127631											
NEK4	6787	broad.mit.edu	37	chr3	52802578	52802578	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgttcagcagctcgccgctCtcggctagaggcatttcgga	12	13	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52802578	A	A	52802578	4	1	148	1	0	0	0	0	0	1	0	0	10421	922	32	3	2449	3	NEK4	3	52802578	Nonsense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	833857	52802578	145219852	243	127632											
CACNA2D3	55799	broad.mit.edu	37	chr3	55043403	55043403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaacattgggcttttccaCgatctgtttaggttcctggt	10	8	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55043403	A	A	55043403	1	1	148	0	1	0	0	0	0	0	0	0	2576	551	19	3		3	CACNA2D3	3	55043403	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2240825	55043403	142979027	244	127633											
OR5H15	403274	broad.mit.edu	37	chr3	97888150	97888150	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctaatggtttttattttcTcaggttcaattcaggtattc	6	6	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97888150	A	A	97888150	3	1	148	1	0	0	0	0	1	0	0	0	11255	1551	54	5	609	5	OR5H15	3	97888150	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	42844747	97888150	100134280	245	127634											
ALCAM	214	broad.mit.edu	37	chr3	105266233	105266234	+	Splice_Site	DNP	GG	TT	TT													attttaattgtaatatttcaGgcaaacctcaaataaaaatg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	105266234	TT	TT	105266233	5	4	148	1	0	0	0	0	0	0	1	0	487	1014	35	2	1282	2	ALCAM	3	105266233	Splice_Site	DNP	GG	TCGA-49-6767-01A-11D-1855-08	7378083	105266233	92756197	246	127635											
DZIP3	9666	broad.mit.edu	37	chr3	108392919	108392919	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctctttctctcaaaaacCtgtaggtgtatttcttacag	5	9	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108392919	T	T	108392919	1	4	148	0	1	0	0	0	0	0	0	0	4905	696	24	4		4	DZIP3	3	108392919	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3126686	108392919	89629511	247	127636											
MORC1	27136	broad.mit.edu	37	chr3	108690320	108690320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactcaactgtcagaactGggtttgtctcctgggtatta	10	9	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108690320	T	T	108690320	1	4	148	0	1	0	0	0	0	0	0	0	9795	1363	47	2		2	MORC1	3	108690320	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	297401	108690320	89332110	248	127637											
ABHD10	55347	broad.mit.edu	37	chr3	111700675	111700675	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattccttaatcgaccagacCttccaaacctggcttataag	5	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111700675	G	G	111700675	3	3	148	1	0	0	0	0	1	0	0	0	74	681	24	4	193	4	ABHD10	3	111700675	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3010355	111700675	86321755	249	127638											
DRD3	1814	broad.mit.edu	37	chr3	113866281	113866281	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtggtattaaagccaaaCagaagagggcaggacacagc	12	9	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113866281	G	G	113866281	2	3	148	1	0	0	0	0	0	0	0	1	4798	465	17	4		4	DRD3	3	113866281	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2165606	113866281	84156149	250	127639											
IGSF11	152404	broad.mit.edu	37	chr3	118624650	118624650	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaagaccataaaaacagaCgaacactggagagctatcaa	9	9	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118624650	T	T	118624650	1	4	148	0	1	0	0	0	0	0	0	0	7668	551	19	4		4	IGSF11	3	118624650	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4758369	118624650	79397780	251	127640											
C3orf1	51300	broad.mit.edu	37	chr3	119236107	119236107	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtactctggtgagactgttCaggaaagaaaacagaaggat	12	5	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119236107	T	T	119236107	4	4	148	1	0	0	0	0	0	1	0	0	2228	827	29	4	674	4	C3orf1	3	119236107	Nonsense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	611457	119236107	78786323	252	127641											
LRRC58	116064	broad.mit.edu	37	chr3	120054529	120054529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaaaactcagcttgcagCaaacctcagaactataatta	4	9	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120054529	A	A	120054529	1	1	148	0	1	0	0	0	0	0	0	0	9101	725	25	3		3	LRRC58	3	120054529	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	818422	120054529	77967901	253	127642											
UROC1	131669	broad.mit.edu	37	chr3	126211293	126211293	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggcgatggcctggttaaTggccacagcgatggccacgc	15	12	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126211293	C	C	126211293	3	2	148	1	0	0	0	0	1	0	0	0	17154	1464	51	5	474	5	UROC1	3	126211293	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	6156764	126211293	71811137	254	127643											
PLXNA1	5361	broad.mit.edu	37	chr3	126725054	126725054	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccctccgcccgcctggGcctgggctacttgccccact	11	20	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126725054	T	T	126725054	1	4	148	0	1	0	0	0	0	0	0	0	12214	1218	42	3		3	PLXNA1	3	126725054	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	513761	126725054	71297376	255	127644											
ZIC4	84107	broad.mit.edu	37	chr3	147114033	147114033	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtcaggttcatgcccccGtagccatgcagggctgcggc	13	15	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147114033	T	T	147114033	4	4	148	1	0	0	0	0	0	1	0	0	17807	1140	40	3	722	3	ZIC4	3	147114033	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	20388979	147114033	50908397	256	127645											
SELT	51714	broad.mit.edu	37	chr3	150329498	150329498	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccgctcaccatcctccgcAggcagcacagttgccaggag	10	17	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150329498	T	T	150329498	1	4	148	0	1	0	0	0	0	0	0	0	14135	203	7	5		5	SELT	3	150329498	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	3215465	150329498	47692932	257	127646											
MED12L	116931	broad.mit.edu	37	chr3	151112334	151112334	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacagtgcatttttttctaCtttgttcataaagtgagact	8	6	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151112334	G	G	151112334	1	3	148	0	1	0	0	0	0	0	0	0	9522	580	20	4		4	MED12L	3	151112334	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	782836	151112334	46910096	258	127647											
C3orf55	152078	broad.mit.edu	37	chr3	157271098	157271098	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaactcaagcactgatAcgtccggagagcacttgacc	9	13	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157271098	T	T	157271098	3	4	148	1	0	0	0	0	1	0	0	0	2256	391	14	5	54	5	C3orf55	3	157271098	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	6158764	157271098	40751332	259	127648											
SLITRK3	22865	broad.mit.edu	37	chr3	164906575	164906575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggcagcttctttcgacGccttcggagcacgtaggcaa	13	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164906575	T	T	164906575	3	4	148	1	0	0	0	0	1	0	0	0	14858	1087	38	3	893	3	SLITRK3	3	164906575	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	7635477	164906575	33115855	260	127649											
ZBBX	79740	broad.mit.edu	37	chr3	167086434	167086434	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataattttatataatcttttCctgttaaattagaatcatga	3	4	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167086434	A	A	167086434	1	1	148	0	1	0	0	0	0	0	0	0	17643	870	30	3		3	ZBBX	3	167086434	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2179859	167086434	30935996	261	127650											
SAMD7	344658	broad.mit.edu	37	chr3	169650504	169650504	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccagaaacactgacacccGtgggccaggacttactgaaa	9	13	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169650504	C	C	169650504	1	2	148	0	1	0	0	0	0	0	0	0	13935	1160	40	4		4	SAMD7	3	169650504	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2564070	169650504	28371926	262	127651											
NLGN1	22871	broad.mit.edu	37	chr3	173322580	173322580	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactttggaaagataagaggGattaagaaggaactcaataa	10	3	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173322580	T	T	173322580	2	4	148	1	0	0	0	0	0	0	0	1	10556	1161	41	3		3	NLGN1	3	173322580	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	3672076	173322580	24699850	263	127652											
NAALADL2	254827	broad.mit.edu	37	chr3	175520882	175520882	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaccccttgcatcaaatgAgacccttcaagaagccctgt	6	14	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175520882	T	T	175520882	3	4	148	1	0	0	0	0	1	0	0	0	10224	304	11	5	2333	5	NAALADL2	3	175520882	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	2198302	175520882	22501548	264	127653											
MRPL47	57129	broad.mit.edu	37	chr3	179311818	179311818	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accactctgttaagtatttcCtaaaaatctttttggcacaa	4	9	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179311818	T	T	179311818	1	4	148	0	1	0	0	0	0	0	0	0	9905	696	24	4		4	MRPL47	3	179311818	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3790936	179311818	18710612	265	127654											
KNG1	3827	broad.mit.edu	37	chr3	186461476	186461476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataacatcatattaactgcGttttactatacttacagagt	5	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186461476	T	T	186461476	1	4	148	0	1	0	0	0	0	0	0	0	8498	1160	40	3		3	KNG1	3	186461476	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	7149658	186461476	11560954	266	127655											
RTP2	344892	broad.mit.edu	37	chr3	187416656	187416656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgctggactcgtccagcCgcgccgtgccgcactcatag	12	16	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187416656	A	A	187416656	3	1	148	1	0	0	0	0	1	0	0	0	13845	652	23	1	373	1	RTP2	3	187416656	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	955180	187416656	10605774	267	127656											
LSG1	55341	broad.mit.edu	37	chr3	194366963	194366963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccatgcgctgtcatgaatCctcgcatgtctgtggagaga	12	10	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194366963	A	A	194366963	3	1	148	1	0	0	0	0	1	0	0	0	9136	855	30	3	435	3	LSG1	3	194366963	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	6950307	194366963	3655467	268	127657											
FAM193A	8603	broad.mit.edu	37	chr4	2698298	2698298	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcacgcgtgcagcgaagcGagcaaggcataagcaaagga	14	10	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2698298	A	A	2698298	3	1	148	1	0	0	0	0	1	0	0	0	5571	1058	37	4	2666	4	FAM193A	4	2698298	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08		2698298	188455978	269	127658											
HTT	3064	broad.mit.edu	37	chr4	3148485	3148485	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagactgttgtttgcttaaaAattgtctataatttgacttt	6	4	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3148485	T	T	3148485	1	4	148	0	1	0	0	0	0	0	0	0	7527	29	1	5		5	HTT	4	3148485	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	450187	3148485	188005791	270	127659											
MSX1	4487	broad.mit.edu	37	chr4	4864368	4864369	+	Intron	INS	-	T	T													attattactacttcttgggcINStgatcatgctccaatgcttc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4864369	T	T	4864368	6	5	148	0	1	1	1	0	0	0	0	0	9989	812	28	0		0	MSX1	4	4864368	Intron	INS	-	TCGA-49-6767-01A-11D-1855-08	1715883	4864368	186289908	271	127660											
STK32B	55351	broad.mit.edu	37	chr4	5170126	5170126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggttcggaatgttttccGggagctgcagatcatgcaag	14	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5170126	T	T	5170126	3	4	148	1	0	0	0	0	1	0	0	0	15416	1116	39	1	219	1	STK32B	4	5170126	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	305758	5170126	185984150	272	127661											
EVC	2121	broad.mit.edu	37	chr4	5750028	5750028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgattctcaggagctgcagGctctggtaatgctggagggg	17	8	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5750028	T	T	5750028	3	4	148	1	0	0	0	0	1	0	0	0	5327	1203	42	3	1123	3	EVC	4	5750028	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	579902	5750028	185404248	273	127662											
ZNF518B	85460	broad.mit.edu	37	chr4	10445318	10445318	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaagacttctggaaagcaGtctcccttgcttatttaatt	7	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10445318	C	C	10445318	3	2	148	1	0	0	0	0	1	0	0	0	18090	1020	36	4	593	4	ZNF518B	4	10445318	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4695290	10445318	180708958	274	127663											
CLNK	116449	broad.mit.edu	37	chr4	10566338	10566338	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccaggtcggctgtccaatgGagatagaggtcctggtgtct	14	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10566338	C	C	10566338	3	2	148	1	0	0	0	0	1	0	0	0	3579	1174	41	4	982	4	CLNK	4	10566338	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	121020	10566338	180587938	275	127664											
BOD1L	259282	broad.mit.edu	37	chr4	13616838	13616838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaatttcattggaatagCcaaattaaaaaatgtgttaa	6	4	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13616838	A	A	13616838	1	1	148	0	1	0	0	0	0	0	0	0	1489	754	26	3		3	BOD1L	4	13616838	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3050500	13616838	177537438	276	127665											
BST1	683	broad.mit.edu	37	chr4	15733498	15733498	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgctctaaccctcctcCagccctgcagcctccccttg	7	19	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15733498	A	A	15733498	1	1	148	0	1	0	0	0	0	0	0	0	1542	609	21	2		2	BST1	4	15733498	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	2116660	15733498	175420778	277	127666											
ARAP2	116984	broad.mit.edu	37	chr4	36149351	36149351	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttctgttaagttttcagcAaataagggaacaaaatgctg	9	6	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36149351	T	T	36149351	3	4	148	1	0	0	0	0	1	0	0	0	841	127	5	5	2160	5	ARAP2	4	36149351	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	20415853	36149351	155004925	278	127667											
N4BP2	55728	broad.mit.edu	37	chr4	40115128	40115128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaccaaaggaacttgcaaGgtaaaacttggaggctacct	9	8	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40115128	T	T	40115128	3	4	148	1	0	0	0	0	1	0	0	0	10204	1014	35	2	1682	2	N4BP2	4	40115128	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3965777	40115128	151039148	279	127668											
GABRG1	2565	broad.mit.edu	37	chr4	46099303	46099303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccttcatgaatttttggGgccaagacccaggttttgtt	9	9	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46099303	T	T	46099303	2	4	148	1	0	0	0	0	0	0	0	1	6231	1219	43	2		2	GABRG1	4	46099303	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	5984175	46099303	145054973	280	127669											
CWH43	80157	broad.mit.edu	37	chr4	49032733	49032733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taataattactttgtttttgGgtttatcagtaaagaaaaaa	6	2	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49032733	T	T	49032733	1	4	148	0	1	0	0	0	0	0	0	0	4106	1247	43	2		2	CWH43	4	49032733	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2933430	49032733	142121543	281	127670											
PDGFRA	5156	broad.mit.edu	37	chr4	55131107	55131107	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatcagagctggatctagAaatggaagctcttaaaaccg	9	8	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55131107	T	T	55131107	3	4	148	1	0	0	0	0	1	0	0	0	11755	246	9	5	664	5	PDGFRA	4	55131107	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	6098374	55131107	136023169	282	127671											
AASDH	132949	broad.mit.edu	37	chr4	57222636	57222636	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcaagagaagaagcagaGgctgttgacctgggctgaga	15	6	0	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57222636	A	A	57222636	1	1	148	0	1	0	0	0	0	0	0	0	22	1015	35	4		4	AASDH	4	57222636	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2091529	57222636	133931640	283	127672											
PPAT	5471	broad.mit.edu	37	chr4	57267741	57267741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcacacagagtaccttccCttagagaaacaattgattca	6	10	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57267741	A	A	57267741	1	1	148	0	1	0	0	0	0	0	0	0	12398	696	24	2		2	PPAT	4	57267741	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	45105	57267741	133886535	284	127673											
UGT2B10	7365	broad.mit.edu	37	chr4	69693379	69693379	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattttgaaagaatttaaatGatttaaccaatccgaaatct	5	5	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69693379	T	T	69693379	1	4	148	0	1	0	0	0	0	0	0	0	17082	1305	45	3		3	UGT2B10	4	69693379	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	12425638	69693379	121460897	285	127674											
UGT2B28	54490	broad.mit.edu	37	chr4	70146539	70146540	+	Missense_Mutation	DNP	AT	TC	TC													caaaaagatagcttttggttAtatttttcacaagaacaaga							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	70146540	TC	TC	70146539	3	4	148	1	0	0	0	0	1	0	0	0	17086	446	16	5	323	5	UGT2B28	4	70146539	Missense_Mutation	DNP	AT	TCGA-49-6767-01A-11D-1855-08	453160	70146539	121007737	286	127675											
UGT2B4	7363	broad.mit.edu	37	chr4	70352326	70352326	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttgttcttcagagacttaCcaagaagatcattctggggt	9	7	4	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70352326	G	G	70352326	5	3	148	1	0	0	0	0	0	0	1	0	17087	521	18	4	507	4	UGT2B4	4	70352326	Splice_Site	SNP	C	TCGA-49-6767-01A-11D-1855-08	205787	70352326	120801950	287	127676											
NPFFR2	10886	broad.mit.edu	37	chr4	72897572	72897572	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttttctttgccgcgctcGgattctgagtttcacaagaa	8	11	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72897572	T	T	72897572	1	4	148	0	1	0	0	0	0	0	0	0	10673	1131	39	1		1	NPFFR2	4	72897572	5'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	2545246	72897572	118256704	288	127677											
AFP	174	broad.mit.edu	37	chr4	74320873	74320873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaacctatgaattcacCccggattgtagagtgttaac	7	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74320873	A	A	74320873	1	1	148	0	1	0	0	0	0	0	0	0	363	638	22	2		2	AFP	4	74320873	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1423301	74320873	116833403	289	127678											
FRAS1	80144	broad.mit.edu	37	chr4	79387361	79387361	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtattttgccttccggacaGgccgagtctgtcacattcac	10	12	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79387361	T	T	79387361	5	4	148	1	0	0	0	0	0	0	1	0	6102	1014	35	2	7302	2	FRAS1	4	79387361	Splice_Site	SNP	G	TCGA-49-6767-01A-11D-1855-08	5066488	79387361	111766915	290	127679											
C4orf22	255119	broad.mit.edu	37	chr4	81308886	81308886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcttctcacctgtgtgGcttcagatgtgctgctgcag	13	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81308886	T	T	81308886	1	4	148	0	1	0	0	0	0	0	0	0	2278	1218	42	3		3	C4orf22	4	81308886	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1921525	81308886	109845390	291	127680											
PRKG2	5593	broad.mit.edu	37	chr4	82069963	82069963	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgaatgagaaaacagaTcggccttgaagtaacagaag	12	5	0	6			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82069963	A	A	82069963	1	1	148	0	1	0	0	0	0	0	0	0	12629	1450	50	5		5	PRKG2	4	82069963	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	761077	82069963	109084313	292	127681											
PLAC8	51316	broad.mit.edu	37	chr4	84028990	84028990	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaacagtcacacatgcCtgtctgccagttggagttct	10	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84028990	T	T	84028990	3	4	148	1	0	0	0	0	1	0	0	0	12110	681	24	4	274	4	PLAC8	4	84028990	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1959027	84028990	107125286	293	127682											
AFF1	4299	broad.mit.edu	37	chr4	88055521	88055521	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattttggcaggtgtatagtGaaactttgtgtcttggactg	12	5	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88055521	A	A	88055521	1	1	148	0	1	0	0	0	0	0	0	0	356	1305	45	4		4	AFF1	4	88055521	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	4026531	88055521	103098755	294	127683											
IBSP	3381	broad.mit.edu	37	chr4	88731895	88731895	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagggtatacagggttagcTgcaatccagcttcccaagaa	10	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88731895	A	A	88731895	2	1	148	1	0	0	0	0	0	0	0	1	7545	1567	55	5		5	IBSP	4	88731895	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	676374	88731895	102422381	295	127684											
MEPE	56955	broad.mit.edu	37	chr4	88755829	88755829	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tataactggcaatgctttgtGgtaagatattgttgtctttt	9	4	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88755829	A	A	88755829	1	1	148	0	1	0	0	0	0	0	0	0	9571	1363	47	4		4	MEPE	4	88755829	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	23934	88755829	102398447	296	127685											
HERC5	51191	broad.mit.edu	37	chr4	89414161	89414161	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attatttgctctgtttcctcAggtttcatttagtggagaaa	8	6	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89414161	T	T	89414161	5	4	148	1	0	0	0	0	0	0	1	0	7128	202	7	5	2198	5	HERC5	4	89414161	Splice_Site	SNP	A	TCGA-49-6767-01A-11D-1855-08	658332	89414161	101740115	297	127686											
UNC5C	8633	broad.mit.edu	37	chr4	96090406	96090407	+	Frame_Shift_Ins	INS	-	CC	CC													aatactgcccttctgctgctINSaaggacaccaccgtttcatg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	96090407	CC	CC	96090406	7	5	148	1	0	1	1	0	0	0	0	0	17119	1519	53	0	24	0	UNC5C	4	96090406	Frame_Shift_Ins	INS	-	TCGA-49-6767-01A-11D-1855-08	6676245	96090406	95063870	298	127687											
TSPAN5	10098	broad.mit.edu	37	chr4	99579208	99579208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagcgcctgcggggctgCgaaaagtaaaggcaacgaac	15	10	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99579208	A	A	99579208	1	1	148	0	1	0	0	0	0	0	0	0	16775	783	27	3		3	TSPAN5	4	99579208	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3488802	99579208	91575068	299	127688											
ADH4	127	broad.mit.edu	37	chr4	100063722	100063722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatacagcttccctgtaCtagaaactccaaggcctctg	6	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100063722	A	A	100063722	1	1	148	0	1	0	0	0	0	0	0	0	310	580	20	3		3	ADH4	4	100063722	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	484514	100063722	91090554	300	127689											
ADH4	127	broad.mit.edu	37	chr4	100063990	100063990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagattttgacagggttggGggtaggagagaggagatcat	18	2	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100063990	T	T	100063990	1	4	148	0	1	0	0	0	0	0	0	0	310	1247	43	2		2	ADH4	4	100063990	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	268	100063990	91090286	301	127690											
ADH1C	126	broad.mit.edu	37	chr4	100266283	100266283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaggcatgagacaggacCataactaatgtgcaaactca	8	9	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100266283	A	A	100266283	1	1	148	0	1	0	0	0	0	0	0	0	309	609	21	2		2	ADH1C	4	100266283	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	202293	100266283	90887993	302	127691											
TET2	54790	broad.mit.edu	37	chr4	106158576	106158576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaatttatcttcagatatGggattttccttcttttttta	5	6	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106158576	T	T	106158576	1	4	148	0	1	0	0	0	0	0	0	0	15892	1348	47	2		2	TET2	4	106158576	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	5892293	106158576	84995700	303	127692											
TBCK	93627	broad.mit.edu	37	chr4	107156448	107156448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactcccagaagagcagccCaggttaaacctctcataaga	7	13	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107156448	A	A	107156448	3	1	148	1	0	0	0	0	1	0	0	0	15758	595	21	2	1302	2	TBCK	4	107156448	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	997872	107156448	83997828	304	127693											
HADH	3033	broad.mit.edu	37	chr4	108935785	108935785	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctttttttttttttttaAccttatttttgtttttcatt	1	5	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108935785	T	T	108935785	1	4	148	0	1	0	0	0	0	0	0	0	7008	58	2	5		5	HADH	4	108935785	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1779337	108935785	82218491	305	127694											
COL25A1	84570	broad.mit.edu	37	chr4	109745304	109745304	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggagaagaatcaaacaaGgtacatgctgggatggagag	15	5	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109745304	A	A	109745304	1	1	148	0	1	0	0	0	0	0	0	0	3716	1000	35	4		4	COL25A1	4	109745304	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	809519	109745304	81408972	306	127695											
PITX2	5308	broad.mit.edu	37	chr4	111539486	111539486	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcggaattcagcgacgggCtactcaggttgttcaagtta	12	10	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111539486	T	T	111539486	3	4	148	1	0	0	0	0	1	0	0	0	12050	797	28	4	208	4	PITX2	4	111539486	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1794182	111539486	79614790	307	127696											
ANK2	287	broad.mit.edu	37	chr4	114176839	114176839	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgctgtactttggaacctGaaaataatgaaaaaaaaaaa	6	4	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114176839	T	T	114176839	1	4	148	0	1	0	0	0	0	0	0	0	621	1305	45	3		3	ANK2	4	114176839	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2637353	114176839	76977437	308	127697											
ANK2	287	broad.mit.edu	37	chr4	114264349	114264349	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcaagatcaaggcagAatttgacttcctttagtaat	6	6	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114264349	G	G	114264349	1	3	148	0	1	0	0	0	0	0	0	0	621	261	9	5		5	ANK2	4	114264349	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	87510	114264349	76889927	309	127698											
NDST4	64579	broad.mit.edu	37	chr4	115751124	115751124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcaccaattgaataaaGgaaatgtatttttgtatgcc	7	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115751124	T	T	115751124	1	4	148	0	1	0	0	0	0	0	0	0	10353	1015	35	2		2	NDST4	4	115751124	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1486775	115751124	75403152	310	127699											
METTL14	57721	broad.mit.edu	37	chr4	119612646	119612646	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtgatagagaaataacCcctatttgtaaaatatttac	7	5	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119612646	T	T	119612646	1	4	148	0	1	0	0	0	0	0	0	0	9591	638	22	4		4	METTL14	4	119612646	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3861522	119612646	71541630	311	127700											
QRFPR	84109	broad.mit.edu	37	chr4	122291121	122291121	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgtgtagccaggatctctCagccctgcctgttgcccaaa	11	13	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122291121	A	A	122291121	1	1	148	0	1	0	0	0	0	0	0	0	12986	841	29	3		3	QRFPR	4	122291121	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2678475	122291121	68863155	312	127701											
FAT4	79633	broad.mit.edu	37	chr4	126336245	126336245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtctccattattttgttgGatgtaaatgataacccaccg	7	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126336245	T	T	126336245	3	4	148	1	0	0	0	0	1	0	0	0	5749	1174	41	3	6145	3	FAT4	4	126336245	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4045124	126336245	64818031	313	127702											
ARHGAP10	79658	broad.mit.edu	37	chr4	148744109	148744109	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaacagagagaaattatgGtgagttgagaggggtgtaaa	16	1	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148744109	T	T	148744109	5	4	148	1	0	0	0	0	0	0	1	0	864	1275	44	3	323	3	ARHGAP10	4	148744109	Splice_Site	SNP	G	TCGA-49-6767-01A-11D-1855-08	22407864	148744109	42410167	314	127703											
ACCN5	51802	broad.mit.edu	37	chr4	156787352	156787352	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcaccgttctcagcataTacttttgatttttctgtctg	5	10	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156787352	C	C	156787352	2	2	148	1	0	0	0	0	0	0	0	1	132	1393	49	5		5	ACCN5	4	156787352	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	8043243	156787352	34366924	315	127704											
GRIA2	2891	broad.mit.edu	37	chr4	158262431	158262431	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagatccctctctgggcgCattgttggaggtgtgtggtg	15	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262431	A	A	158262431	2	1	148	1	0	0	0	0	0	0	0	1	6834	697	25	3		3	GRIA2	4	158262431	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	1475079	158262431	32891845	316	127705											
TKTL2	84076	broad.mit.edu	37	chr4	164394955	164394955	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccaccgcggcagtgctcTcacgtgaccgccccgccctc	9	21	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164394955	C	C	164394955	1	2	148	0	1	0	0	0	0	0	0	0	16059	1566	54	5		5	TKTL2	4	164394955	5'UTR	SNP	T	TCGA-49-6767-01A-11D-1855-08	6132524	164394955	26759321	317	127706											
NEK1	4750	broad.mit.edu	37	chr4	170345816	170345816	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgcaaaggattcttctGgtgaacactgaactgattga	10	6	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170345816	A	A	170345816	3	1	148	1	0	0	0	0	1	0	0	0	10416	1348	47	4	774	4	NEK1	4	170345816	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	5950861	170345816	20808460	318	127707											
ENPP6	133121	broad.mit.edu	37	chr4	185045347	185045347	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcatcgctgactgcattgGcaaaattgatatccgttggg	12	8	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185045347	A	A	185045347	3	1	148	1	0	0	0	0	1	0	0	0	5176	1203	42	4	846	4	ENPP6	4	185045347	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	14699531	185045347	6108929	319	127708											
ACSL1	2180	broad.mit.edu	37	chr4	185679038	185679038	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggcccaggaacataatgTctcaacatctggtaccacaa	8	11	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185679038	C	C	185679038	3	2	148	1	0	0	0	0	1	0	0	0	177	1667	58	5	289	5	ACSL1	4	185679038	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	633691	185679038	5475238	320	127709											
ACSL1	2180	broad.mit.edu	37	chr4	185709941	185709941	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaacatctatgcactgtGgaatggctaaatcaagctaa	9	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185709941	A	A	185709941	1	1	148	0	1	0	0	0	0	0	0	0	177	1363	47	4		4	ACSL1	4	185709941	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	30903	185709941	5444335	321	127710											
FAM149A	25854	broad.mit.edu	37	chr4	187077278	187077278	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagaagtgtttgatcacGtctggacaaatatggtagaa	11	6	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187077278	A	A	187077278	3	1	148	1	0	0	0	0	1	0	0	0	5501	1145	40	4	522	4	FAM149A	4	187077278	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1367337	187077278	4076998	322	127711											
TUBB4Q	56604	broad.mit.edu	37	chr4	190905449	190905449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaagacctgcccgaaggGccccgagcgcacagagtcca	12	16	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190905449	T	T	190905449	3	4	148	1	0	0	0	0	1	0	0	0	16885	1203	42	3	1073	3	TUBB4Q	4	190905449	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3828171	190905449	248827	323	127712											
AHRR	57491	broad.mit.edu	37	chr5	434671	434671	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccactgctgggcgcagcAgggagctgacccctttccac	14	15	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	434671	T	T	434671	3	4	148	1	0	0	0	0	1	0	0	0	417	179	7	5	1928	5	AHRR	5	434671	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08		434671	180480589	324	127713											
SLC6A18	348932	broad.mit.edu	37	chr5	1233114	1233114	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcggatgctcaccgcgggggGagggccggggaaccggttgc	21	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1233114	T	T	1233114	1	4	148	0	1	0	0	0	0	0	0	0	14795	1189	41	3		3	SLC6A18	5	1233114	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	798443	1233114	179682146	325	127714											
ADCY2	108	broad.mit.edu	37	chr5	7691002	7691002	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgggagtctgcctgactgGagacattttgcctgggatct	13	9	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7691002	T	T	7691002	1	4	148	0	1	0	0	0	0	0	0	0	294	1189	41	3		3	ADCY2	5	7691002	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6457888	7691002	173224258	326	127715											
CDH12	1010	broad.mit.edu	37	chr5	21783506	21783506	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaattatactgcgcagTgctttctctgtctagtaatt	9	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21783506	G	G	21783506	3	3	148	1	0	0	0	0	1	0	0	0	3128	1696	59	5	1050	5	CDH12	5	21783506	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	14092504	21783506	159131754	327	127716											
ADAMTS12	81792	broad.mit.edu	37	chr5	33662202	33662202	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactgtggtcagggaccaTtgcattaggcattcatctcc	9	12	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33662202	C	C	33662202	1	2	148	0	1	0	0	0	0	0	0	0	257	1508	52	5		5	ADAMTS12	5	33662202	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	11878696	33662202	147253058	328	127717											
SPEF2	79925	broad.mit.edu	37	chr5	35779385	35779385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagaaaaggaagaagatGgtaccctgaccattgaacag	11	7	0	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35779385	T	T	35779385	3	4	148	1	0	0	0	0	1	0	0	0	15153	1348	47	2	4523	2	SPEF2	5	35779385	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2117183	35779385	145135875	329	127718											
IL7R	3575	broad.mit.edu	37	chr5	35876570	35876570	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatatgtcaccatgtccagCttctaccaaaaccagtgaag	7	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35876570	A	A	35876570	3	1	148	1	0	0	0	0	1	0	0	0	7775	796	28	3	1392	3	IL7R	5	35876570	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	97185	35876570	145038690	330	127719											
C7	730	broad.mit.edu	37	chr5	40945338	40945338	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaattatgaattttacaaTagtacttggtcttatgtaaa	5	3	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40945338	C	C	40945338	2	2	148	1	0	0	0	0	0	0	0	1	2400	1403	49	5		5	C7	5	40945338	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	5068768	40945338	139969922	331	127720											
ERCC8	1161	broad.mit.edu	37	chr5	60198430	60198430	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgattctgaagaaagtgaggCcaaatattcaatgtgaatag	10	4	2	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60198430	G	G	60198430	1	3	148	0	1	0	0	0	0	0	0	0	5261	754	26	4		4	ERCC8	5	60198430	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	19253092	60198430	120716830	332	127721											
ADAMTS6	11174	broad.mit.edu	37	chr5	64538065	64538065	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaatcataaatggtaccaTtgttggaaaataccaaaagc	6	6	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64538065	C	C	64538065	1	2	148	0	1	0	0	0	0	0	0	0	270	1508	52	5		5	ADAMTS6	5	64538065	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	4339635	64538065	116377195	333	127722											
ADAMTS6	11174	broad.mit.edu	37	chr5	64587298	64587298	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagtaccacggcctgaaCtgttcaacataaaggatcaa	9	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64587298	A	A	64587298	5	1	148	1	0	0	0	0	0	0	1	0	270	579	20	3	2043	3	ADAMTS6	5	64587298	Splice_Site	SNP	C	TCGA-49-6767-01A-11D-1855-08	49233	64587298	116327962	334	127723											
RAD17	5884	broad.mit.edu	37	chr5	68670537	68670537	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagaaaggcaaccaaaacAggtaactaagaaatgtgttt	8	5	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68670537	T	T	68670537	3	4	148	1	0	0	0	0	1	0	0	0	13087	202	7	5	406	5	RAD17	5	68670537	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	4083239	68670537	112244723	335	127724											
ANKRD34B	340120	broad.mit.edu	37	chr5	79855837	79855837	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatttccataccttcatccAtcttcggaggttagaactca	5	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79855837	G	G	79855837	3	3	148	1	0	0	0	0	1	0	0	0	663	217	8	5	1546	5	ANKRD34B	5	79855837	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	11185300	79855837	101059423	336	127725											
TMEM161B	153396	broad.mit.edu	37	chr5	87502892	87502892	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgttacaatcaacacTgccattgctttgacaaagaa	5	9	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87502892	A	A	87502892	2	1	148	1	0	0	0	0	0	0	0	1	16200	1567	55	5		5	TMEM161B	5	87502892	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	7647055	87502892	93412368	337	127726											
SLC26A2	1836	broad.mit.edu	37	chr5	149357616	149357616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttattccctgctggctgGccaagaacctgtctatggtc	10	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149357616	T	T	149357616	3	4	148	1	0	0	0	0	1	0	0	0	14631	1203	42	3	403	3	SLC26A2	5	149357616	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	61854724	149357616	31557644	338	127727											
FAM114A2	10827	broad.mit.edu	37	chr5	153390880	153390880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggtaaaatcttcatccCctaaaaaaccaagtcccata	3	13	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153390880	A	A	153390880	3	1	148	1	0	0	0	0	1	0	0	0	5450	637	22	2	627	2	FAM114A2	5	153390880	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	4033264	153390880	27524380	339	127728											
ZFP2	80108	broad.mit.edu	37	chr5	178336849	178336849	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcatcttcactgtggttGctgaggtcagggccaatcac	11	12	5	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178336849	A	A	178336849	1	1	148	0	1	0	0	0	0	0	0	0	17767	1334	46	4		4	ZFP2	5	178336849	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	24945969	178336849	2578411	340	127729											
BTNL8	79908	broad.mit.edu	37	chr5	180338550	180338550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccaagagaacgccgggagCatatcctgttccatgcggca	12	12	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180338550	A	A	180338550	3	1	148	1	0	0	0	0	1	0	0	0	1577	709	25	3	645	3	BTNL8	5	180338550	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2001701	180338550	576710	341	127730											
DUSP22	56940	broad.mit.edu	37	chr6	348120	348120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctggccggggtctccaGgagcgtgacactggtgatcg	16	12	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348120	T	T	348120	3	4	148	1	0	0	0	0	1	0	0	0	4861	1000	35	2	303	2	DUSP22	6	348120	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08		348120	170766947	342	127731											
EXOC2	55770	broad.mit.edu	37	chr6	549144	549144	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactgagctggtaaaaccacCgacttgtgcgttttacatga	9	9	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	549144	G	G	549144	1	3	148	0	1	0	0	0	0	0	0	0	5344	667	23	4		4	EXOC2	6	549144	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	201024	549144	170565923	343	127732											
LRRC16A	55604	broad.mit.edu	37	chr6	25581118	25581121	+	Intron	DEL	TAAG	-	-													gcaagttttctgtggctaccTaagtgtttttttaaattatt					rs3834707		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25581121	-	-	25581118	6	5	148	0	1	1	0	1	0	0	0	0	9058	1537	53	0		0	LRRC16A	6	25581118	Intron	DEL	TAAG	TCGA-49-6767-01A-11D-1855-08	25031974	25581118	145533949	344	127733											
SLC17A4	10050	broad.mit.edu	37	chr6	25777157	25777157	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcttctgtgaatcaggagCccttgttaacttcttggata	9	9	3	1	rs142556117		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25777157	G	G	25777157	3	3	148	1	0	0	0	0	1	0	0	0	14532	739	26	4	1272	4	SLC17A4	6	25777157	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	196039	25777157	145337910	345	127734											
SLC17A4	10050	broad.mit.edu	37	chr6	25777188	25777188	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggatattgctcctcgGtagggacctcttttgcctca	9	11	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25777188	T	T	25777188	5	4	148	1	0	0	0	0	0	0	1	0	14532	1275	44	3	1303	3	SLC17A4	6	25777188	Splice_Site	SNP	G	TCGA-49-6767-01A-11D-1855-08	31	25777188	145337879	346	127735											
SLC17A1	6568	broad.mit.edu	37	chr6	25813412	25813412	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcataaaacagaacgaaccAgagaagacatacggcacagc	8	10	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25813412	T	T	25813412	3	4	148	1	0	0	0	0	1	0	0	0	14529	188	7	5	781	5	SLC17A1	6	25813412	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	36224	25813412	145301655	347	127736											
HIST1H4B	8366	broad.mit.edu	37	chr6	26027319	26027319	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accttgagaacgccacgagtCtcctcataaatcaaaccgga	7	13	3	1	rs147907725		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26027319	G	G	26027319	3	3	148	1	0	0	0	0	1	0	0	0	7233	912	32	4	153	4	HIST1H4B	6	26027319	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	213907	26027319	145087748	348	127737											
BTN3A1	11119	broad.mit.edu	37	chr6	26413835	26413835	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgcatattcatactttccTggacgtctccttctctgagg	7	12	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26413835	C	C	26413835	3	2	148	1	0	0	0	0	1	0	0	0	1572	1580	55	5	1659	5	BTN3A1	6	26413835	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	386516	26413835	144701232	349	127738											
HIST1H4I	8294	broad.mit.edu	37	chr6	27107390	27107390	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggccgcaccctctatggcttCggcggctaaatggcattttg	12	12	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27107390	G	G	27107390	3	3	148	1	0	0	0	0	1	0	0	0	7240	883	31	4	305	4	HIST1H4I	6	27107390	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	693555	27107390	144007677	350	127739											
HIST1H2AH	85235	broad.mit.edu	37	chr6	27115267	27115267	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccgtgctgctgcctaagaaGactgagagccaccataaggc	12	12	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27115267	A	A	27115267	2	1	148	1	0	0	0	0	0	0	0	1	7201	933	33	4		4	HIST1H2AH	6	27115267	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	7877	27115267	143999800	351	127740											
ZNF184	7738	broad.mit.edu	37	chr6	27435611	27435611	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctaaagaataaaatggcaTttcaagaaaccacatcttac	4	9	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27435611	C	C	27435611	1	2	148	0	1	0	0	0	0	0	0	0	17877	1508	52	5		5	ZNF184	6	27435611	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	320344	27435611	143679456	352	127741											
OR2J2	26707	broad.mit.edu	37	chr6	29142112	29142112	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcatgcaatcaaccactGggcttcagaaagtgtttagg	11	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29142112	T	T	29142112	3	4	148	1	0	0	0	0	1	0	0	0	11097	1348	47	2	702	2	OR2J2	6	29142112	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1706501	29142112	141972955	353	127742											
MDC1	9656	broad.mit.edu	37	chr6	30675788	30675788	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttgttctctgtcctgTttccccttggttaattcttc	6	10	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30675788	A	A	30675788	3	1	148	1	0	0	0	0	1	0	0	0	9496	1722	60	5	3733	5	MDC1	6	30675788	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1533676	30675788	140439279	354	127743											
BAT3	7917	broad.mit.edu	37	chr6	31616977	31616977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggaacataagcttacaGgaagattgaaggttccaacc	10	8	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31616977	T	T	31616977	3	4	148	1	0	0	0	0	1	0	0	0	1327	1014	35	2	3064	2	BAT3	6	31616977	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	941189	31616977	139498090	355	127744											
FGD2	221472	broad.mit.edu	37	chr6	36988305	36988305	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctgaactggttgcctcccTcctcttggcaggtgcgggag	14	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36988305	A	A	36988305	1	1	148	0	1	0	0	0	0	0	0	0	5890	1566	54	5		5	FGD2	6	36988305	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	5371328	36988305	134126762	356	127745											
MDGA1	266727	broad.mit.edu	37	chr6	37623622	37623622	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcctggtagaagttgcCtcgcacatcgctcaccgtct	8	15	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37623622	T	T	37623622	3	4	148	1	0	0	0	0	1	0	0	0	9499	681	24	4	2490	4	MDGA1	6	37623622	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	635317	37623622	133491445	357	127746											
TTBK1	84630	broad.mit.edu	37	chr6	43220674	43220674	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagatgatgaagccaggGgctaagagaggtgataagat	16	3	0	6			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43220674	T	T	43220674	1	4	148	0	1	0	0	0	0	0	0	0	16802	1247	43	2		2	TTBK1	6	43220674	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	5597052	43220674	127894393	358	127747											
SLC22A7	10864	broad.mit.edu	37	chr6	43267478	43267478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcacccgcacccttactgGctcagccctggctggtttta	8	16	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43267478	T	T	43267478	3	4	148	1	0	0	0	0	1	0	0	0	14573	1203	42	3	627	3	SLC22A7	6	43267478	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	46804	43267478	127847589	359	127748											
OPN5	221391	broad.mit.edu	37	chr6	47754282	47754282	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acatttggaaatggatatgtCctttacatgtcttctagacg	8	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47754282	T	T	47754282	2	4	148	1	0	0	0	0	0	0	0	1	10977	842	30	4		4	OPN5	6	47754282	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	4486804	47754282	123360785	360	127749											
C6orf138	442213	broad.mit.edu	37	chr6	47846147	47846147	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggtgctttttggaaggGgggaaaaacgttaggaacac	15	4	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47846147	A	A	47846147	2	1	148	1	0	0	0	0	0	0	0	1	2355	1219	43	4		4	C6orf138	6	47846147	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	91865	47846147	123268920	361	127750											
PGK2	5232	broad.mit.edu	37	chr6	49754640	49754640	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacatccttgcccagcaaGgatttgagctcaacagcaac	8	12	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49754640	A	A	49754640	2	1	148	1	0	0	0	0	0	0	0	1	11886	987	35	4		4	PGK2	6	49754640	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1908493	49754640	121360427	362	127751											
TFAP2B	7021	broad.mit.edu	37	chr6	50807830	50807830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccctgggatatttagggcCtgggtgctgattattacctt	12	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50807830	A	A	50807830	1	1	148	0	1	0	0	0	0	0	0	0	15911	696	24	2		2	TFAP2B	6	50807830	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1053190	50807830	120307237	363	127752											
PKHD1	5314	broad.mit.edu	37	chr6	51882194	51882194	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggggaagttcagggagggaGaaggtaaagttacctgataa	16	3	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51882194	A	A	51882194	1	1	148	0	1	0	0	0	0	0	0	0	12066	957	33	4		4	PKHD1	6	51882194	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1074364	51882194	119232873	364	127753											
PKHD1	5314	broad.mit.edu	37	chr6	51934486	51934486	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaaagaacaataccaacagGacaaagttgttttctgatat	6	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51934486	T	T	51934486	1	4	148	0	1	0	0	0	0	0	0	0	12066	1189	41	3		3	PKHD1	6	51934486	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	52292	51934486	119180581	365	127754											
TINAG	27283	broad.mit.edu	37	chr6	54219385	54219385	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgttaccagcacaaataaaGaatcagaaaaatatcgaaag	6	6	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54219385	T	T	54219385	4	4	148	1	0	0	0	0	0	1	0	0	16044	943	33	3	1235	3	TINAG	6	54219385	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2284899	54219385	116895682	366	127755											
GFRAL	389400	broad.mit.edu	37	chr6	55216299	55216299	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtccaaagaagctcttcacAgcaagacatgtgcagtgaac	9	10	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55216299	T	T	55216299	3	4	148	1	0	0	0	0	1	0	0	0	6415	188	7	5	637	5	GFRAL	6	55216299	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	996914	55216299	115898768	367	127756											
DST	667	broad.mit.edu	37	chr6	56328453	56328453	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgggtgaagcgcctcgTgatgatggccgggatcttcg	16	9	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56328453	A	A	56328453	2	1	148	1	0	0	0	0	0	0	0	1	4823	1683	59	5		5	DST	6	56328453	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	1112154	56328453	114786614	368	127757											
DST	667	broad.mit.edu	37	chr6	56371508	56371508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtttatcaggctccccaCatgccgcaatgagttcagaa	10	11	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56371508	A	A	56371508	3	1	148	1	0	0	0	0	1	0	0	0	4823	478	17	3	4177	3	DST	6	56371508	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	43055	56371508	114743559	369	127758											
DST	667	broad.mit.edu	37	chr6	56481041	56481041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttgtcaattgttccctgCtctatagcctcattaatatt	5	10	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56481041	A	A	56481041	1	1	148	0	1	0	0	0	0	0	0	0	4823	796	28	3		3	DST	6	56481041	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	109533	56481041	114634026	370	127759											
DST	667	broad.mit.edu	37	chr6	56510720	56510720	+	Frame_Shift_Del	DEL	C	-	-													agcatggcaataatgagtttCccccactctttttctatgtc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56510720	-	-	56510720	7	5	148	1	0	1	0	1	0	0	0	0	4823	870	30	0		0	DST	6	56510720	Frame_Shift_Del	DEL	C	TCGA-49-6767-01A-11D-1855-08	29679	56510720	114604347	371	127760											
COL19A1	1310	broad.mit.edu	37	chr6	70637771	70637771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcaatctccagtttccCcacaaaagttctttgttttc	4	12	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70637771	A	A	70637771	1	1	148	0	1	0	0	0	0	0	0	0	3708	638	22	2		2	COL19A1	6	70637771	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	14127051	70637771	100477296	372	127761											
COL9A1	1297	broad.mit.edu	37	chr6	70952250	70952250	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattgttctcatattcacaTaacaagagaaatcaagtaca	4	8	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70952250	A	A	70952250	1	1	148	0	1	0	0	0	0	0	0	0	3739	1421	49	5		5	COL9A1	6	70952250	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	314479	70952250	100162817	373	127762											
RIMS1	22999	broad.mit.edu	37	chr6	73026455	73026455	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggccctctggtttcagagGccactccctagtaggcaggg	15	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73026455	C	C	73026455	1	2	148	0	1	0	0	0	0	0	0	0	13478	1218	42	4		4	RIMS1	6	73026455	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2074205	73026455	98088612	374	127763											
KCNQ5	56479	broad.mit.edu	37	chr6	73751906	73751906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtacttatcatggaccGggcactcttgtgtcttgaaa	11	8	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73751906	T	T	73751906	1	4	148	0	1	0	0	0	0	0	0	0	8156	1131	39	1		1	KCNQ5	6	73751906	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	725451	73751906	97363161	375	127764											
KHDC1L	100129128	broad.mit.edu	37	chr6	73933460	73933460	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctcctctcatcccctcttCccaggggagatcagtctccg	7	17	5	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73933460	T	T	73933460	1	4	148	0	1	0	0	0	0	0	0	0	8215	870	30	4		4	KHDC1L	6	73933460	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	181554	73933460	97181607	376	127765											
C6orf221	154288	broad.mit.edu	37	chr6	74072525	74072525	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caatgccagtggaggtgctcGgtcacctccctaagcggttc	12	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74072525	C	C	74072525	3	2	148	1	0	0	0	0	1	0	0	0	2378	1116	39	4	75	4	C6orf221	6	74072525	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	139065	74072525	97042542	377	127766											
COL12A1	1303	broad.mit.edu	37	chr6	75875291	75875291	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtggcaaatactgaaattCtgtatttggtctctggctgc	10	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75875291	A	A	75875291	3	1	148	1	0	0	0	0	1	0	0	0	3701	913	32	3	6488	3	COL12A1	6	75875291	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1802766	75875291	95239776	378	127767											
BCKDHB	594	broad.mit.edu	37	chr6	80878601	80878601	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaccctcagattgttaatGaagctgccaagtatcgctat	8	10	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80878601	A	A	80878601	3	1	148	1	0	0	0	0	1	0	0	0	1365	1291	45	4	505	4	BCKDHB	6	80878601	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	5003310	80878601	90236466	379	127768											
DOPEY1	23033	broad.mit.edu	37	chr6	83829489	83829489	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgataacaacggtgctatCataggacccagaagcacaag	9	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83829489	T	T	83829489	2	4	148	1	0	0	0	0	0	0	0	1	4747	816	29	4		4	DOPEY1	6	83829489	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2950888	83829489	87285578	380	127769											
TBX18	9096	broad.mit.edu	37	chr6	85448333	85448333	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatggaaagggtcaggatagGggtggacaaaagaagtctag	16	3	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85448333	C	C	85448333	1	2	148	0	1	0	0	0	0	0	0	0	15775	1247	43	4		4	TBX18	6	85448333	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1618844	85448333	85666734	381	127770											
MDN1	23195	broad.mit.edu	37	chr6	90499592	90499592	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctgccacacaaactcTccaggaacatctgtgcagcg	9	15	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90499592	A	A	90499592	2	1	148	1	0	0	0	0	0	0	0	1	9508	1538	54	5		5	MDN1	6	90499592	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	5051259	90499592	80615475	382	127771											
SIM1	6492	broad.mit.edu	37	chr6	100838294	100838294	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccttgtgctgggtctggTtgcatcctcagatgggaagt	14	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100838294	G	G	100838294	3	3	148	1	0	0	0	0	1	0	0	0	14436	1722	60	5	60	5	SIM1	6	100838294	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	10338702	100838294	70276773	383	127772											
SIM1	6492	broad.mit.edu	37	chr6	100838543	100838543	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaactggattttgaaatGcgatccgaattgggactact	9	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100838543	T	T	100838543	2	4	148	1	0	0	0	0	0	0	0	1	14436	1306	46	3		3	SIM1	6	100838543	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	249	100838543	70276524	384	127773											
GRIK2	2898	broad.mit.edu	37	chr6	102074265	102074265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttcagcctgtgatcaGctgtctcttggggtggctgc	12	12	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102074265	T	T	102074265	3	4	148	1	0	0	0	0	1	0	0	0	6840	962	34	3	304	3	GRIK2	6	102074265	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1235722	102074265	69040802	385	127774											
HACE1	57531	broad.mit.edu	37	chr6	105280884	105280884	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaattttaaaaaacaaacaCatgcagcttaaagtcctcat	3	9	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105280884	G	G	105280884	1	3	148	0	1	0	0	0	0	0	0	0	7006	493	17	4		4	HACE1	6	105280884	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3206619	105280884	65834183	386	127775											
AIM1	202	broad.mit.edu	37	chr6	106968029	106968029	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagagagctctgaagttagAgaagtgcagttgccaacttg	12	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106968029	T	T	106968029	3	4	148	1	0	0	0	0	1	0	0	0	430	301	11	5	1728	5	AIM1	6	106968029	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	1687145	106968029	64147038	387	127776											
KIAA1919	91749	broad.mit.edu	37	chr6	111585238	111585238	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactgtcacttgcaatgccCcctaaaatgacacagaccta	5	13	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111585238	T	T	111585238	1	4	148	0	1	0	0	0	0	0	0	0	8332	638	22	4		4	KIAA1919	6	111585238	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4617209	111585238	59529829	388	127777											
LAMA4	3910	broad.mit.edu	37	chr6	112460960	112460960	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taactgtctcttaccgggcaCatggcactgatgtggagggg	14	9	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112460960	T	T	112460960	3	4	148	1	0	0	0	0	1	0	0	0	8680	478	17	4	2435	4	LAMA4	6	112460960	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	875722	112460960	58654107	389	127778											
LAMA4	3910	broad.mit.edu	37	chr6	112462801	112462801	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatccaaatatttgggtAtatacaagtgacttctggcc	8	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112462801	G	G	112462801	1	3	148	0	1	0	0	0	0	0	0	0	8680	464	16	5		5	LAMA4	6	112462801	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1841	112462801	58652266	390	127779											
ROS1	6098	broad.mit.edu	37	chr6	117686772	117686772	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcactaaattctacactgTagaaaactacaccccagtct	5	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117686772	A	A	117686772	3	1	148	1	0	0	0	0	1	0	0	0	13642	1638	57	5	4198	5	ROS1	6	117686772	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	5223971	117686772	53428295	391	127780											
C6orf170	221322	broad.mit.edu	37	chr6	121629330	121629330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaatatttaacaaactacTaaaaggtaaagtctggataa	5	5	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121629330	A	A	121629330	1	1	148	0	1	0	0	0	0	0	0	0	2367	1537	53	5		5	C6orf170	6	121629330	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	3942558	121629330	49485737	392	127781											
EYA4	2070	broad.mit.edu	37	chr6	133849873	133849873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccacacagcacaacatgcCcttctggaggatatccagtc	7	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133849873	A	A	133849873	3	1	148	1	0	0	0	0	1	0	0	0	5374	623	22	2	2029	2	EYA4	6	133849873	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	12220543	133849873	37265194	393	127782											
BCLAF1	9774	broad.mit.edu	37	chr6	136599694	136599694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggactcctggaacgtgaacGacctcgtctaggactcctag	11	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136599694	T	T	136599694	3	4	148	1	0	0	0	0	1	0	0	0	1388	1058	37	3	2477	3	BCLAF1	6	136599694	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2749821	136599694	34515373	394	127783											
BCLAF1	9774	broad.mit.edu	37	chr6	136599790	136599790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgataataccctctacCccttcctctgtacccataag	3	16	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136599790	A	A	136599790	3	1	148	1	0	0	0	0	1	0	0	0	1388	623	22	2	2573	2	BCLAF1	6	136599790	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	96	136599790	34515277	395	127784											
TXLNB	167838	broad.mit.edu	37	chr6	139564044	139564044	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcagcctgaggagttagGggaggcaggggactctctga	17	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139564044	T	T	139564044	2	4	148	1	0	0	0	0	0	0	0	1	16914	1219	43	2		2	TXLNB	6	139564044	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	2964254	139564044	31551023	396	127785											
NMBR	4829	broad.mit.edu	37	chr6	142409829	142409829	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagagtccgctggagttttCacgcgctccggtgccctgag	14	13	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142409829	T	T	142409829	1	4	148	0	1	0	0	0	0	0	0	0	10582	841	29	4		4	NMBR	6	142409829	5'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	2845785	142409829	28705238	397	127786											
EPM2A	7957	broad.mit.edu	37	chr6	145948691	145948691	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccttcctcagattccagCccatcacatactggagccag	7	16	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145948691	T	T	145948691	3	4	148	1	0	0	0	0	1	0	0	0	5225	739	26	4	176	4	EPM2A	6	145948691	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3538862	145948691	25166376	398	127787											
GRM1	2911	broad.mit.edu	37	chr6	146350550	146350550	+	5'UTR	DEL	C	-	-													tgttggcgaggggcaccactCcgggagaggcggcgctgggc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	146350550	-	-	146350550	6	5	148	0	1	1	0	1	0	0	0	0	6862	870	30	0		0	GRM1	6	146350550	5'UTR	DEL	C	TCGA-49-6767-01A-11D-1855-08	401859	146350550	24764517	399	127788											
GRM1	2911	broad.mit.edu	37	chr6	146747740	146747740	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accagccaatgtccgtcggcAcatgtgcagctttgaaaacc	9	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146747740	G	G	146747740	1	3	148	0	1	0	0	0	0	0	0	0	6862	146	6	5		5	GRM1	6	146747740	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	397190	146747740	24367327	400	127789											
SASH1	23328	broad.mit.edu	37	chr6	148761494	148761494	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atacgaatcttctctcgtagGagtcgcttggcttctgtagc	10	10	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148761494	T	T	148761494	4	4	148	1	0	0	0	0	0	1	0	0	13960	1188	41	3	351	3	SASH1	6	148761494	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2013754	148761494	22353573	401	127790											
SASH1	23328	broad.mit.edu	37	chr6	148840928	148840928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagccccccaagaagatgGggacattcttctcctaccca	7	14	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148840928	T	T	148840928	3	4	148	1	0	0	0	0	1	0	0	0	13960	1232	43	2	1146	2	SASH1	6	148840928	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	79434	148840928	22274139	402	127791											
SYNE1	23345	broad.mit.edu	37	chr6	152542080	152542080	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcctgctgctgaactgtcGaagcacactgtttggagtag	11	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152542080	A	A	152542080	3	1	148	1	0	0	0	0	1	0	0	0	15564	1059	37	4	4820	4	SYNE1	6	152542080	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3701152	152542080	18572987	403	127792											
SYNE1	23345	broad.mit.edu	37	chr6	152623136	152623136	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggctttcatcgtcagcatCttgcacttggaattcaaaga	8	9	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152623136	T	T	152623136	2	4	148	1	0	0	0	0	0	0	0	1	15564	912	32	4		4	SYNE1	6	152623136	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	81056	152623136	18491931	404	127793											
SYNE1	23345	broad.mit.edu	37	chr6	152658015	152658015	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtgcaatgttcagctcCagctcagagtgcctcctctt	8	13	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152658015	T	T	152658015	2	4	148	1	0	0	0	0	0	0	0	1	15564	581	21	4		4	SYNE1	6	152658015	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	34879	152658015	18457052	405	127794											
SYNE1	23345	broad.mit.edu	37	chr6	152698106	152698106	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgggtgatctccatatctTcacactatacatgcatcaat	5	10	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152698106	C	C	152698106	1	2	148	0	1	0	0	0	0	0	0	0	15564	1798	62	5		5	SYNE1	6	152698106	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	40091	152698106	18416961	406	127795											
NOX3	50508	broad.mit.edu	37	chr6	155764448	155764448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaggtagctctcgttagGggtgttgcccagcttggaaa	15	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155764448	T	T	155764448	3	4	148	1	0	0	0	0	1	0	0	0	10652	1232	43	2	1297	2	NOX3	6	155764448	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3066342	155764448	15350619	407	127796											
SLC22A1	6580	broad.mit.edu	37	chr6	160576922	160576922	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccatctgtgttgtctcttCctctctttggctggctgtga	9	12	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160576922	A	A	160576922	1	1	148	0	1	0	0	0	0	0	0	0	14553	870	30	3		3	SLC22A1	6	160576922	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4812474	160576922	10538145	408	127797											
LPA	4018	broad.mit.edu	37	chr6	161006351	161006351	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaatttacactcttctatAttagcatgcaaattgaaatg	4	7	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161006351	T	T	161006351	1	4	148	0	1	0	0	0	0	0	0	0	8990	464	16	5		5	LPA	6	161006351	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	429429	161006351	10108716	409	127798											
PARK2	5071	broad.mit.edu	37	chr6	161990322	161990322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcctccctggggagccCaaactgtctcattagcgtct	10	15	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161990322	A	A	161990322	1	1	148	0	1	0	0	0	0	0	0	0	11543	609	21	2		2	PARK2	6	161990322	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	983971	161990322	9124745	410	127799											
PDE10A	10846	broad.mit.edu	37	chr6	165844813	165844813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatatcccaaaataaggCattgggtgacttaacctcta	7	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165844813	T	T	165844813	1	4	148	0	1	0	0	0	0	0	0	0	11724	725	25	4		4	PDE10A	6	165844813	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3854491	165844813	5270254	411	127800											
SUN1	23353	broad.mit.edu	37	chr7	888327	888327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgctgtgactttcctcGccaggcgcctccctcgctgc	10	16	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	888327	T	T	888327	1	4	148	0	1	0	0	0	0	0	0	0	15509	1102	38	3		3	SUN1	7	888327	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08		888327	158250336	412	127801											
SNX8	29886	broad.mit.edu	37	chr7	2309172	2309172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaattaaaaaaaaaaaaaAagaaaaaaaaaagaaaaata	2	0	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2309172	G	G	2309172	1	3	148	0	1	0	0	0	0	0	0	0	15022	29	1	5		5	SNX8	7	2309172	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1420845	2309172	156829491	413	127802											
SDK1	221935	broad.mit.edu	37	chr7	3658883	3658884	+	Intron	INS	-	T	T													gaatataagtaattgatcgcINSttgaaaaaataagatcccat							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3658884	T	T	3658883	6	5	148	0	1	1	1	0	0	0	0	0	14081	812	28	0		0	SDK1	7	3658883	Intron	INS	-	TCGA-49-6767-01A-11D-1855-08	1349711	3658883	155479780	414	127803											
SDK1	221935	broad.mit.edu	37	chr7	4169723	4169723	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatcctggagcgcaccaaaGacgatggtaggtccagggtt	13	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4169723	A	A	4169723	3	1	148	1	0	0	0	0	1	0	0	0	14081	942	33	4	4229	4	SDK1	7	4169723	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	510840	4169723	154968940	415	127804											
RADIL	55698	broad.mit.edu	37	chr7	4917441	4917441	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccacgtcacacagcacGtactggccggcctgcctggg	11	18	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4917441	T	T	4917441	4	4	148	1	0	0	0	0	0	1	0	0	13105	1140	40	3	2953	3	RADIL	7	4917441	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	747718	4917441	154221222	416	127805											
TMEM106B	54664	broad.mit.edu	37	chr7	12271647	12271647	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaaatatctattgatatttCctatactctcaatgaagagg	6	6	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12271647	T	T	12271647	1	4	148	0	1	0	0	0	0	0	0	0	16144	870	30	4		4	TMEM106B	7	12271647	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	7354206	12271647	146867016	417	127806											
ETV1	2115	broad.mit.edu	37	chr7	13935690	13935690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggatcacacacaaacttgTagacatatctctctccagcc	5	14	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13935690	C	C	13935690	3	2	148	1	0	0	0	0	1	0	0	0	5319	1638	57	5	202	5	ETV1	7	13935690	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1664043	13935690	145202973	418	127807											
TMEM195	392636	broad.mit.edu	37	chr7	15430192	15430192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagttaaaaattttttcaGgttagtgtaatatactttca	5	4	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15430192	T	T	15430192	1	4	148	0	1	0	0	0	0	0	0	0	16240	1015	35	2		2	TMEM195	7	15430192	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1494502	15430192	143708471	419	127808											
HDAC9	9734	broad.mit.edu	37	chr7	18868754	18868754	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaccctctccattatatctGaccattgaaaacctgtcttg	4	13	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18868754	T	T	18868754	1	4	148	0	1	0	0	0	0	0	0	0	7081	1305	45	3		3	HDAC9	7	18868754	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3438562	18868754	140269909	420	127809											
FERD3L	222894	broad.mit.edu	37	chr7	19184872	19184872	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagggctgggtcccccaaGgagaccccgggtgcgaagtc	16	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19184872	T	T	19184872	2	4	148	1	0	0	0	0	0	0	0	1	5873	987	35	2		2	FERD3L	7	19184872	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	316118	19184872	139953791	421	127810											
ABCB5	340273	broad.mit.edu	37	chr7	20685268	20685268	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaaatacagagataaagtCtaaaaaaataccattagtct	4	5	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20685268	T	T	20685268	1	4	148	0	1	0	0	0	0	0	0	0	44	928	32	4		4	ABCB5	7	20685268	5'Flank	SNP	C	TCGA-49-6767-01A-11D-1855-08	1500396	20685268	138453395	422	127811											
ABCB5	340273	broad.mit.edu	37	chr7	20685744	20685744	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggagaacctggatataccAtcgggactgttcttgctgta	11	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20685744	G	G	20685744	1	3	148	0	1	0	0	0	0	0	0	0	44	217	8	5		5	ABCB5	7	20685744	5'Flank	SNP	A	TCGA-49-6767-01A-11D-1855-08	476	20685744	138452919	423	127812											
SP8	221833	broad.mit.edu	37	chr7	20826321	20826321	+	Intron	DEL	G	-	-													tgatagcccgtggcctggccGgggcgactttaaccccctcc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20826321	-	-	20826321	6	5	148	0	1	1	0	1	0	0	0	0	15084	1131	39	0		0	SP8	7	20826321	Intron	DEL	G	TCGA-49-6767-01A-11D-1855-08	140577	20826321	138312342	424	127813											
DNAH11	8701	broad.mit.edu	37	chr7	21646324	21646324	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctcttggatttaatgcAgaaaatccatacacagcgct	7	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21646324	C	C	21646324	2	2	148	1	0	0	0	0	0	0	0	1	4639	175	7	5		5	DNAH11	7	21646324	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	820003	21646324	137492339	425	127814											
IGF2BP3	10643	broad.mit.edu	37	chr7	23401104	23401104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccgcaaaatatgttactGtacttaacttagttattata	4	6	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23401104	T	T	23401104	1	4	148	0	1	0	0	0	0	0	0	0	7645	1392	48	3		3	IGF2BP3	7	23401104	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1754780	23401104	135737559	426	127815											
HOXA1	3198	broad.mit.edu	37	chr7	27134888	27134888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggactgacctgttttgGgagggtttcttttgactttc	12	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27134888	T	T	27134888	3	4	148	1	0	0	0	0	1	0	0	0	7355	1232	43	2	371	2	HOXA1	7	27134888	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3733784	27134888	132003775	427	127816											
HOXA3	3200	broad.mit.edu	37	chr7	27147727	27147727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttagaccaaagagggctGgcccggagttgctcatgggc	16	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27147727	T	T	27147727	3	4	148	1	0	0	0	0	1	0	0	0	7360	1348	47	2	196	2	HOXA3	7	27147727	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	12839	27147727	131990936	428	127817											
HOXA3	3200	broad.mit.edu	37	chr7	27148137	27148137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcctttttgtacttcatGcggcgattctggaaccagat	9	9	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27148137	T	T	27148137	2	4	148	1	0	0	0	0	0	0	0	1	7360	1306	46	3		3	HOXA3	7	27148137	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	410	27148137	131990526	429	127818											
GHRHR	2692	broad.mit.edu	37	chr7	31014581	31014581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggccttctttcctctctcCccaggtgctgggacctggac	10	16	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31014581	T	T	31014581	1	4	148	0	1	0	0	0	0	0	0	0	6437	638	22	4		4	GHRHR	7	31014581	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3866444	31014581	128124082	430	127819											
ELMO1	9844	broad.mit.edu	37	chr7	37052857	37052857	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaccatgcagcaggcccCtttagcgctgcgggaatccc	13	14	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37052857	T	T	37052857	1	4	148	0	1	0	0	0	0	0	0	0	5107	696	24	4		4	ELMO1	7	37052857	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	6038276	37052857	122085806	431	127820											
STARD3NL	83930	broad.mit.edu	37	chr7	38247244	38247244	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaaggaagggaaaagaaaGgcatatctgatgtcaggagg	15	3	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38247244	A	A	38247244	3	1	148	1	0	0	0	0	1	0	0	0	15376	1000	35	4	141	4	STARD3NL	7	38247244	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1194387	38247244	120891419	432	127821											
AMPH	273	broad.mit.edu	37	chr7	38476053	38476053	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatctgataagaccatgatAtagcccatgtatactctctc	6	10	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38476053	G	G	38476053	1	3	148	0	1	0	0	0	0	0	0	0	588	464	16	5		5	AMPH	7	38476053	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	228809	38476053	120662610	433	127822											
GLI3	2737	broad.mit.edu	37	chr7	42187792	42187792	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacagccctccccatagctCctgaacaagtgccgactggc	8	17	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42187792	A	A	42187792	1	1	148	0	1	0	0	0	0	0	0	0	6503	870	30	3		3	GLI3	7	42187792	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3711739	42187792	116950871	434	127823											
ABCA13	154664	broad.mit.edu	37	chr7	48443428	48443428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaccagtggggtggacCcttgctcccggcatagcctg	13	15	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48443428	A	A	48443428	3	1	148	1	0	0	0	0	1	0	0	0	31	623	22	2	12005	2	ABCA13	7	48443428	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	6255636	48443428	110695235	435	127824											
DDC	1644	broad.mit.edu	37	chr7	50537934	50537934	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctggcttccttttcggcTcaccggctcgcctatttctc	8	15	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50537934	A	A	50537934	1	1	148	0	1	0	0	0	0	0	0	0	4358	1566	54	5		5	DDC	7	50537934	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	2094506	50537934	108600729	436	127825											
COBL	23242	broad.mit.edu	37	chr7	51327225	51327225	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatttgtggtagcaagatGggccactgagaagtggaaag	14	5	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51327225	A	A	51327225	1	1	148	0	1	0	0	0	0	0	0	0	3685	1363	47	4		4	COBL	7	51327225	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	789291	51327225	107811438	437	127826											
POM121L12	285877	broad.mit.edu	37	chr7	53103916	53103916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgggggcgctcagccaGtgccccaagggaagcgctag	16	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103916	T	T	53103916	3	4	148	1	0	0	0	0	1	0	0	0	12336	1020	36	3	554	3	POM121L12	7	53103916	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1776691	53103916	106034747	438	127827											
CALN1	83698	broad.mit.edu	37	chr7	71743772	71743772	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtacaacaagccggcggtcAcatggtggaacggcatcttt	12	10	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71743772	T	T	71743772	3	4	148	1	0	0	0	0	1	0	0	0	2617	159	6	5	662	5	CALN1	7	71743772	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	18639856	71743772	87394891	439	127828											
FKBP6	8468	broad.mit.edu	37	chr7	72715150	72715150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccgaaggcagcacaccCgcaaaaagtagcctttgtcc	10	14	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72715150	A	A	72715150	1	1	148	0	1	0	0	0	0	0	0	0	5969	667	23	1		1	FKBP6	7	72715150	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	971378	72715150	86423513	440	127829											
CLIP2	7461	broad.mit.edu	37	chr7	73731815	73731815	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctctgcccgcaggtgagTgaagatggcagagaggacgt	16	8	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73731815	A	A	73731815	1	1	148	0	1	0	0	0	0	0	0	0	3565	1711	59	5		5	CLIP2	7	73731815	5'UTR	SNP	T	TCGA-49-6767-01A-11D-1855-08	1016665	73731815	85406848	441	127830											
PCLO	27445	broad.mit.edu	37	chr7	82538323	82538323	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttcctcacgacgcagaTgataggctttggacaccaag	10	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82538323	C	C	82538323	3	2	148	1	0	0	0	0	1	0	0	0	11677	1464	51	5	2210	5	PCLO	7	82538323	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	8806508	82538323	76600340	442	127831											
SEMA3D	223117	broad.mit.edu	37	chr7	84636143	84636143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatgctcatcccctgacCtctggatataccatttaata	5	13	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84636143	A	A	84636143	3	1	148	1	0	0	0	0	1	0	0	0	14140	681	24	2	458	2	SEMA3D	7	84636143	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2097820	84636143	74502520	443	127832											
KIAA1324L	222223	broad.mit.edu	37	chr7	86544146	86544146	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggttccaccccacgattCtaccacatttgtactttttc	4	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86544146	A	A	86544146	4	1	148	1	0	0	0	0	0	1	0	0	8294	922	32	3	1505	3	KIAA1324L	7	86544146	Nonsense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1908003	86544146	72594517	444	127833											
ABCB1	5243	broad.mit.edu	37	chr7	87144540	87144540	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagctaaatgtgaaagtgTgctcaccactttccctgcca	8	12	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87144540	C	C	87144540	1	2	148	0	1	0	0	0	0	0	0	0	40	1711	59	5		5	ABCB1	7	87144540	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	600394	87144540	71994123	445	127834											
SRI	6717	broad.mit.edu	37	chr7	87839151	87839151	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgttgcccaggctggtctcGaactcccgagctcaggcaat	12	13	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87839151	A	A	87839151	1	1	148	0	1	0	0	0	0	0	0	0	15267	1073	37	4		4	SRI	7	87839151	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	694611	87839151	71299512	446	127835											
STEAP2	261729	broad.mit.edu	37	chr7	89859319	89859319	+	Frame_Shift_Del	DEL	C	-	-													tatcccttcagtgagcaatgCtttaaactggagagaattca							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89859319	-	-	89859319	7	5	148	1	0	1	0	1	0	0	0	0	15396	797	28	0	1164	0	STEAP2	7	89859319	Frame_Shift_Del	DEL	C	TCGA-49-6767-01A-11D-1855-08	2020168	89859319	69279344	447	127836											
CALCR	799	broad.mit.edu	37	chr7	93073151	93073151	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcaaatgtgaaaacaagCcaaagtatctgcattcagct	8	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93073151	A	A	93073151	1	1	148	0	1	0	0	0	0	0	0	0	2605	754	26	3		3	CALCR	7	93073151	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3213832	93073151	66065512	448	127837											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97941430	97941430	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattgcttctctcgatcatGggtgaagcctgaggagttcc	11	10	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97941430	T	T	97941430	2	4	148	1	0	0	0	0	0	0	0	1	1307	1335	47	2		2	BAIAP2L1	7	97941430	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	4868279	97941430	61197233	449	127838											
ZKSCAN5	23660	broad.mit.edu	37	chr7	99129089	99129089	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggagaaaccattcaggtgTgaggaatgtgggaaaagcta	16	4	1	2	rs28411998		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99129089	A	A	99129089	4	1	148	1	0	0	0	0	0	1	0	0	17816	1702	59	5	1759	5	ZKSCAN5	7	99129089	Nonsense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1187659	99129089	60009574	450	127839											
ZCWPW1	55063	broad.mit.edu	37	chr7	100016710	100016710	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactgcttaactgaaacccTttttctcttactacatgcca	3	13	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100016710	C	C	100016710	1	2	148	0	1	0	0	0	0	0	0	0	17723	1624	56	5		5	ZCWPW1	7	100016710	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	887621	100016710	59121953	451	127840											
EPHB4	2050	broad.mit.edu	37	chr7	100421830	100421830	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcagctctcacctgccCgtccacctgagggaatgtca	12	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100421830	T	T	100421830	3	4	148	1	0	0	0	0	1	0	0	0	5219	652	23	4	2909	4	EPHB4	7	100421830	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	405120	100421830	58716833	452	127841											
MUC17	140453	broad.mit.edu	37	chr7	100683533	100683533	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtggccggttctgaggctAgcaccctttcaacaactcct	9	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100683533	G	G	100683533	3	3	148	1	0	0	0	0	1	0	0	0	10068	420	15	5	8846	5	MUC17	7	100683533	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	261703	100683533	58455130	453	127842											
ALKBH4	54784	broad.mit.edu	37	chr7	102097955	102097955	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccggaaagtgacgcagacGcggcgggcctcgatgtgtct	15	12	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102097955	A	A	102097955	2	1	148	1	0	0	0	0	0	0	0	1	529	1074	38	4		4	ALKBH4	7	102097955	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1414422	102097955	57040708	454	127843											
LHFPL3	375612	broad.mit.edu	37	chr7	104309458	104309458	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcgaggacaggaagtgagtCatcacagactgggacctcca	13	10	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104309458	A	A	104309458	1	1	148	0	1	0	0	0	0	0	0	0	8838	841	29	3		3	LHFPL3	7	104309458	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2211503	104309458	54829205	455	127844											
BCAP29	55973	broad.mit.edu	37	chr7	107258738	107258738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaatctgtttctctttGctgtactacataaatcatat	4	8	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107258738	T	T	107258738	1	4	148	0	1	0	0	0	0	0	0	0	1351	1334	46	3		3	BCAP29	7	107258738	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2949280	107258738	51879925	456	127845											
CBLL1	79872	broad.mit.edu	37	chr7	107399544	107399544	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaccaccacctccacgatTgcagggtccgccttctcaaa	7	18	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107399544	C	C	107399544	3	2	148	1	0	0	0	0	1	0	0	0	2729	1821	63	5	1419	5	CBLL1	7	107399544	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	140806	107399544	51739119	457	127846											
LAMB1	3912	broad.mit.edu	37	chr7	107596050	107596050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcctgacccaatgatggGgtcgccatagtaaccagcca	9	13	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107596050	T	T	107596050	3	4	148	1	0	0	0	0	1	0	0	0	8682	1232	43	2	2700	2	LAMB1	7	107596050	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	196506	107596050	51542613	458	127847											
NRCAM	4897	broad.mit.edu	37	chr7	107790398	107790398	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacaggagaaggtgcctctGagctttcgtttccttcagcc	11	11	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107790398	T	T	107790398	4	4	148	1	0	0	0	0	0	1	0	0	10739	1294	45	3	46	3	NRCAM	7	107790398	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	194348	107790398	51348265	459	127848											
DOCK4	9732	broad.mit.edu	37	chr7	111368565	111368565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcgcactggctcctccCcgccgtagctcggcacgggc	12	19	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111368565	A	A	111368565	3	1	148	1	0	0	0	0	1	0	0	0	4729	623	22	2	238	2	DOCK4	7	111368565	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3578167	111368565	47770098	460	127849											
DOCK4	9732	broad.mit.edu	37	chr7	111580244	111580244	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaactgcacagccaaaggGtcgtcggtactggacactac	11	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111580244	C	C	111580244	3	2	148	1	0	0	0	0	1	0	0	0	4729	1261	44	4	5170	4	DOCK4	7	111580244	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	211679	111580244	47558419	461	127850											
FOXP2	93986	broad.mit.edu	37	chr7	114019594	114019594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagattttctcgggaggggtGccttcgacatcattaacatc	11	9	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114019594	T	T	114019594	1	4	148	0	1	0	0	0	0	0	0	0	6087	1334	46	3		3	FOXP2	7	114019594	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2439350	114019594	45119069	462	127851											
FOXP2	93986	broad.mit.edu	37	chr7	114329805	114329805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtttgttgcttacttaGtaaaattttggtgtatctac	7	6	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114329805	T	T	114329805	1	4	148	0	1	0	0	0	0	0	0	0	6087	1044	36	3		3	FOXP2	7	114329805	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	310211	114329805	44808858	463	127852											
ST7	7982	broad.mit.edu	37	chr7	116612082	116612082	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggggaaaaagacacagggGaggagcgggaggcaaaagcg	19	5	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116612082	C	C	116612082	1	2	148	0	1	0	0	0	0	0	0	0	15347	1189	41	4		4	ST7	7	116612082	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2282277	116612082	42526581	464	127853											
NAA38	51691	broad.mit.edu	37	chr7	117828412	117828412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattcagctcttcacagggGgtagaacaagtggtactagg	13	7	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117828412	T	T	117828412	2	4	148	1	0	0	0	0	0	0	0	1	10218	1219	43	2		2	NAA38	7	117828412	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1216330	117828412	41310251	465	127854											
GPR37	2861	broad.mit.edu	37	chr7	124387384	124387384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataaggtgaaagtggtgactCccagagaagcgacctgtggg	15	7	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124387384	A	A	124387384	3	1	148	1	0	0	0	0	1	0	0	0	6756	855	30	3	808	3	GPR37	7	124387384	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	6558972	124387384	34751279	466	127855											
GRM8	2918	broad.mit.edu	37	chr7	126079232	126079232	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtagaggaagctgttaagaTaaatgaggacaaattaaaat	11	2	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126079232	A	A	126079232	1	1	148	0	1	0	0	0	0	0	0	0	6869	1421	49	5		5	GRM8	7	126079232	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1691848	126079232	33059431	467	127856											
CPA1	1357	broad.mit.edu	37	chr7	130021883	130021883	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaggctgggacggtggggcTgctaagggaagcatctgggt	20	7	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130021883	A	A	130021883	1	1	148	0	1	0	0	0	0	0	0	0	3821	1595	55	5		5	CPA1	7	130021883	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	3942651	130021883	29116780	468	127857											
PLXNA4	91584	broad.mit.edu	37	chr7	131831114	131831114	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaggattctgaggttcGgtacggggaatggtcagcag	17	5	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131831114	C	C	131831114	1	2	148	0	1	0	0	0	0	0	0	0	12217	1131	39	4		4	PLXNA4	7	131831114	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1809231	131831114	27307549	469	127858											
PLXNA4	91584	broad.mit.edu	37	chr7	131913210	131913210	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccttggaccgctcacaCcgctccttccgggtgcaact	10	17	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131913210	A	A	131913210	2	1	148	1	0	0	0	0	0	0	0	1	12217	494	18	3		3	PLXNA4	7	131913210	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	82096	131913210	27225453	470	127859											
DGKI	9162	broad.mit.edu	37	chr7	137206751	137206751	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggtcagatacaaatgagaGagcggaattggtagccatgc	14	6	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137206751	C	C	137206751	1	2	148	0	1	0	0	0	0	0	0	0	4511	957	33	4		4	DGKI	7	137206751	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	5293541	137206751	21931912	471	127860											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138441295	138441295	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttcttctttctggaaaatCagaataagttaaaaaaaaag	5	4	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138441295	G	G	138441295	1	3	148	0	1	0	0	0	0	0	0	0	1174	841	29	4		4	ATP6V0A4	7	138441295	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1234544	138441295	20697368	472	127861											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138455936	138455936	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacagcaatatgcagcttcCacctggagaaacagttgtga	9	10	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138455936	G	G	138455936	2	3	148	1	0	0	0	0	0	0	0	1	1174	581	21	4		4	ATP6V0A4	7	138455936	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	14641	138455936	20682727	473	127862											
MGAM	8972	broad.mit.edu	37	chr7	141721963	141721963	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaaatgggactgaatgaAtgggggctattgagtcactg	16	5	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141721963	G	G	141721963	1	3	148	0	1	0	0	0	0	0	0	0	9634	116	4	5		5	MGAM	7	141721963	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	3266027	141721963	17416700	474	127863											
EPHB6	2051	broad.mit.edu	37	chr7	142566876	142566876	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacttggtgtgcaaggtGgcccgtcttggccacagtcc	13	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142566876	T	T	142566876	2	4	148	1	0	0	0	0	0	0	0	1	5220	1335	47	2		2	EPHB6	7	142566876	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	844913	142566876	16571787	475	127864											
KEL	3792	broad.mit.edu	37	chr7	142640996	142640996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggcaggaggtgacttGggcacacagagacttctata	14	7	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142640996	T	T	142640996	1	4	148	0	1	0	0	0	0	0	0	0	8212	1363	47	2		2	KEL	7	142640996	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	74120	142640996	16497667	476	127865											
KEL	3792	broad.mit.edu	37	chr7	142641367	142641367	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggtcagagaagtgacgaGaagtcaaggactgaaaagga	16	4	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142641367	A	A	142641367	1	1	148	0	1	0	0	0	0	0	0	0	8212	957	33	4		4	KEL	7	142641367	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	371	142641367	16497296	477	127866											
KEL	3792	broad.mit.edu	37	chr7	142651545	142651545	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcctttgtccatgtgccAtcttacctgggcatagatct	10	11	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142651545	G	G	142651545	1	3	148	0	1	0	0	0	0	0	0	0	8212	232	8	5		5	KEL	7	142651545	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	10178	142651545	16487118	478	127867											
KEL	3792	broad.mit.edu	37	chr7	142658913	142658913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagttcccattccacctGcctggctgcgttccctcggc	10	16	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142658913	T	T	142658913	3	4	148	1	0	0	0	0	1	0	0	0	8212	1319	46	3	2220	3	KEL	7	142658913	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	7368	142658913	16479750	479	127868											
CLCN1	1180	broad.mit.edu	37	chr7	143017680	143017680	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctctctctctctctctGtctctacatatatatatttt	1	13	6	0	rs78757074		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143017680	C	C	143017680	1	2	148	0	1	0	0	0	0	0	0	0	3493	1392	48	4		4	CLCN1	7	143017680	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	358767	143017680	16120983	480	127869											
CLCN1	1180	broad.mit.edu	37	chr7	143028775	143028775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccttcttttgccctaccCatttactttctggtttctcc	4	15	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143028775	A	A	143028775	1	1	148	0	1	0	0	0	0	0	0	0	3493	609	21	2		2	CLCN1	7	143028775	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	11095	143028775	16109888	481	127870											
KRBA1	84626	broad.mit.edu	37	chr7	149420812	149420812	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccaggtgaaaacatgttCctttttccttagtgaagacc	8	10	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149420812	T	T	149420812	1	4	148	0	1	0	0	0	0	0	0	0	8510	870	30	4		4	KRBA1	7	149420812	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	6392037	149420812	9717851	482	127871											
KRBA1	84626	broad.mit.edu	37	chr7	149421940	149421940	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggggccctgaggctcaaGgtgaggcctgagattggctg	18	9	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149421940	A	A	149421940	3	1	148	1	0	0	0	0	1	0	0	0	8510	1014	35	4	1156	4	KRBA1	7	149421940	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1128	149421940	9716723	483	127872											
SSPO	23145	broad.mit.edu	37	chr7	149497138	149497138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcaaggcctctgtaagcCcaccttccttgtgaggggga	13	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149497138	A	A	149497138	1	1	148	0	1	0	0	0	0	0	0	0	15307	638	22	2		2	SSPO	7	149497138	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	75198	149497138	9641525	484	127873											
GIMAP8	155038	broad.mit.edu	37	chr7	150163991	150163991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtaattgacacccctgacCttttctcctcaatagcttgt	6	12	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150163991	A	A	150163991	3	1	148	1	0	0	0	0	1	0	0	0	6449	681	24	2	207	2	GIMAP8	7	150163991	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	666853	150163991	8974672	485	127874											
DPP6	1804	broad.mit.edu	37	chr7	154519640	154519640	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaagatttgtggttgcTgctgctgctacattggagtt	13	5	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154519640	C	C	154519640	1	2	148	0	1	0	0	0	0	0	0	0	4770	1595	55	5		5	DPP6	7	154519640	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	4355649	154519640	4619023	486	127875											
PTPRN2	5799	broad.mit.edu	37	chr7	157475567	157475567	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagggagaccagggtgagCgcgatgaacttggtggagtc	19	7	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157475567	A	A	157475567	2	1	148	1	0	0	0	0	0	0	0	1	12916	755	27	3		3	PTPRN2	7	157475567	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2955927	157475567	1663096	487	127876											
CSMD1	64478	broad.mit.edu	37	chr8	4645934	4645934	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtggtcttctctttgaCtacccagggtcttggctgtt	11	9	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4645934	A	A	4645934	1	1	148	0	1	0	0	0	0	0	0	0	3978	580	20	3		3	CSMD1	8	4645934	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08		4645934	141718088	488	127877											
DEFA4	1669	broad.mit.edu	37	chr8	6794163	6794163	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaagtaaagccacctaagtGacatccaccattgagatgtg	9	9	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6794163	A	A	6794163	1	1	148	0	1	0	0	0	0	0	0	0	4424	1305	45	4		4	DEFA4	8	6794163	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2148229	6794163	139569859	489	127878											
EFHA2	286097	broad.mit.edu	37	chr8	16956024	16956024	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctattgggatacactgagaCgtaacacaagccaagcactg	10	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16956024	G	G	16956024	3	3	148	1	0	0	0	0	1	0	0	0	4984	536	19	4	980	4	EFHA2	8	16956024	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	10161861	16956024	129407998	490	127879											
ADAM28	10863	broad.mit.edu	37	chr8	24177921	24177921	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggatgagatttaaagaatcAtgaatatgagctatggttac	10	3	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24177921	T	T	24177921	1	4	148	0	1	0	0	0	0	0	0	0	246	232	8	5		5	ADAM28	8	24177921	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	7221897	24177921	122186101	491	127880											
ADAM2	2515	broad.mit.edu	37	chr8	39613420	39613420	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacatattaattttccgcActgcagattgctataattta	4	7	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39613420	G	G	39613420	3	3	148	1	0	0	0	0	1	0	0	0	241	159	6	5	603	5	ADAM2	8	39613420	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	15435499	39613420	106750602	492	127881											
ANK1	286	broad.mit.edu	37	chr8	41519012	41519012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccttttcaggctggccCgcttcactatctgcgccccc	7	20	3	0	rs139762174	byFrequency	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41519012	A	A	41519012	1	1	148	0	1	0	0	0	0	0	0	0	620	652	23	1		1	ANK1	8	41519012	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1905592	41519012	104845010	493	127882											
ANK1	286	broad.mit.edu	37	chr8	41526069	41526069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacaatcgagccgtctgcatCccagtcctgcagtctggggt	12	13	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41526069	A	A	41526069	3	1	148	1	0	0	0	0	1	0	0	0	620	855	30	3	877	3	ANK1	8	41526069	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	7057	41526069	104837953	494	127883											
EFCAB1	79645	broad.mit.edu	37	chr8	49637178	49637178	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttaaatgatatatgtaagtGaacctcatcttcaccctgaa	6	8	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49637178	C	C	49637178	1	2	148	0	1	0	0	0	0	0	0	0	4973	1305	45	4		4	EFCAB1	8	49637178	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	8111109	49637178	96726844	495	127884											
PXDNL	137902	broad.mit.edu	37	chr8	52336052	52336052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtataagagagcatgattaGtgagatcagtcaaataggat	11	3	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52336052	T	T	52336052	1	4	148	0	1	0	0	0	0	0	0	0	12956	1044	36	3		3	PXDNL	8	52336052	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2698874	52336052	94027970	496	127885											
PREX2	80243	broad.mit.edu	37	chr8	69046421	69046421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagcaaggaaaatgagatGgaaacttgggaagccagcag	13	6	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69046421	T	T	69046421	3	4	148	1	0	0	0	0	1	0	0	0	12583	1348	47	2	4249	2	PREX2	8	69046421	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	16710369	69046421	77317601	497	127886											
TRAM1	23471	broad.mit.edu	37	chr8	71495976	71495976	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaacagtcagtactgaaaGaattaaagtcagaagtcttc	7	8	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71495976	A	A	71495976	3	1	148	1	0	0	0	0	1	0	0	0	16575	942	33	4	337	4	TRAM1	8	71495976	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2449555	71495976	74868046	498	127887											
TRPA1	8989	broad.mit.edu	37	chr8	72987748	72987748	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctggggtccgcgcgagCccgagctctcccgcgctgca	16	17	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72987748	A	A	72987748	1	1	148	0	1	0	0	0	0	0	0	0	16702	754	26	3		3	TRPA1	8	72987748	5'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	1491772	72987748	73376274	499	127888											
TCEB1	6921	broad.mit.edu	37	chr8	74868148	74868148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagaactgtgcttacctGggccactcaacatggctttt	9	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74868148	T	T	74868148	3	4	148	1	0	0	0	0	1	0	0	0	15801	1348	47	2	200	2	TCEB1	8	74868148	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1880400	74868148	71495874	500	127889											
GDAP1	54332	broad.mit.edu	37	chr8	75263755	75263755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactttcaacacaactatgtGttccctttctctttttctct	2	12	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75263755	T	T	75263755	1	4	148	0	1	0	0	0	0	0	0	0	6370	1392	48	3		3	GDAP1	8	75263755	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	395607	75263755	71100267	501	127890											
ZFHX4	79776	broad.mit.edu	37	chr8	77763493	77763493	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttaaaaaaacacttggaaGcaggccaccctgaactgagt	8	10	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77763493	A	A	77763493	3	1	148	1	0	0	0	0	1	0	0	0	17761	971	34	4	4370	4	ZFHX4	8	77763493	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2499738	77763493	68600529	502	127891											
CNGB3	54714	broad.mit.edu	37	chr8	87674125	87674125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtccacaaaccatattgGtgaaaaagatggataggatt	9	6	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87674125	T	T	87674125	1	4	148	0	1	0	0	0	0	0	0	0	3633	1276	44	3		3	CNGB3	8	87674125	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	9910632	87674125	58689897	503	127892											
SLC26A7	115111	broad.mit.edu	37	chr8	92406044	92406044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttacatggactgtaaagGcaggagtgtggatgtattgt	15	3	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92406044	T	T	92406044	3	4	148	1	0	0	0	0	1	0	0	0	14636	1203	42	3	1858	3	SLC26A7	8	92406044	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4731919	92406044	53957978	504	127893											
RBM12B	389677	broad.mit.edu	37	chr8	94747803	94747803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaaatccaagaggggaaCgagaacgtgttcttctggga	12	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94747803	A	A	94747803	3	1	148	1	0	0	0	0	1	0	0	0	13222	536	19	3	2173	3	RBM12B	8	94747803	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2341759	94747803	51616219	505	127894											
VPS13B	157680	broad.mit.edu	37	chr8	100182372	100182372	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctctttatgggaaacttCtgaaactccccacatgctgg	8	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100182372	T	T	100182372	2	4	148	1	0	0	0	0	0	0	0	1	17317	912	32	4		4	VPS13B	8	100182372	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	5434569	100182372	46181650	506	127895											
RIMS2	9699	broad.mit.edu	37	chr8	104571594	104571595	+	Intron	DNP	GG	TT	TT													atgcccttggtggtgatctcGgagctggtgtccacggctgc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	104571595	TT	TT	104571594	1	4	148	0	1	0	0	0	0	0	0	0	13479	1131	39	1		1	RIMS2	8	104571594	Intron	DNP	GG	TCGA-49-6767-01A-11D-1855-08	4389222	104571594	41792428	507	127896											
RIMS2	9699	broad.mit.edu	37	chr8	105001577	105001577	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggacccgcactatgaccgGacattataatacaattagcc	8	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105001577	A	A	105001577	3	1	148	1	0	0	0	0	1	0	0	0	13479	1174	41	4	3164	4	RIMS2	8	105001577	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	429983	105001577	41362445	508	127897											
TRHR	7201	broad.mit.edu	37	chr8	110131489	110131489	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtgcagccttcagaaagctCtgcaactgcaagcagaagcc	10	13	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110131489	T	T	110131489	2	4	148	1	0	0	0	0	0	0	0	1	16604	900	32	4		4	TRHR	8	110131489	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	5129912	110131489	36232533	509	127898											
PKHD1L1	93035	broad.mit.edu	37	chr8	110416734	110416734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattaaaataatttcatgGcaagtgttctggaaaaaagt	7	4	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110416734	T	T	110416734	1	4	148	0	1	0	0	0	0	0	0	0	12067	1218	42	3		3	PKHD1L1	8	110416734	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	285245	110416734	35947288	510	127899											
CSMD3	114788	broad.mit.edu	37	chr8	113348921	113348921	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattggttctgtttgaaggaCagtaaaattgatgtagatgc	11	3	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113348921	G	G	113348921	3	3	148	1	0	0	0	0	1	0	0	0	3980	478	17	4	4256	4	CSMD3	8	113348921	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2932187	113348921	33015101	511	127900											
CSMD3	114788	broad.mit.edu	37	chr8	113364763	113364763	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaggaatccaaaccaattGctaagaatatttaatgataa	6	6	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113364763	T	T	113364763	3	4	148	1	0	0	0	0	1	0	0	0	3980	1333	46	3	5118	3	CSMD3	8	113364763	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	15842	113364763	32999259	512	127901											
CSMD3	114788	broad.mit.edu	37	chr8	113484937	113484937	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgacttccacagggcgCtaggaaaaaatggcaaaaat	10	8	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113484937	A	A	113484937	5	1	148	1	0	0	0	0	0	0	1	0	3980	811	28	3	6005	3	CSMD3	8	113484937	Splice_Site	SNP	C	TCGA-49-6767-01A-11D-1855-08	120174	113484937	32879085	513	127902											
CSMD3	114788	broad.mit.edu	37	chr8	113657527	113657527	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaacaaatctctatctcctCtcttgaattgagcagtcgca	6	11	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113657527	A	A	113657527	1	1	148	0	1	0	0	0	0	0	0	0	3980	928	32	3		3	CSMD3	8	113657527	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	172590	113657527	32706495	514	127903											
SNTB1	6641	broad.mit.edu	37	chr8	121706136	121706136	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcacatagggcgtggcttctCgcatgtacttcactgcaagg	11	11	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121706136	G	G	121706136	3	3	148	1	0	0	0	0	1	0	0	0	14986	884	31	4	1056	4	SNTB1	8	121706136	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	8048609	121706136	24657886	515	127904											
HAS2	3037	broad.mit.edu	37	chr8	122626567	122626567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgtaaaccaaactgataCtggaatgagtcctatgaaat	8	6	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122626567	A	A	122626567	3	1	148	1	0	0	0	0	1	0	0	0	7028	565	20	3	221	3	HAS2	8	122626567	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	920431	122626567	23737455	516	127905											
ZHX2	22882	broad.mit.edu	37	chr8	123963750	123963750	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgcacacagacaggcagCatggctagcaaacgaaaatc	9	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123963750	T	T	123963750	1	4	148	0	1	0	0	0	0	0	0	0	17802	725	25	4		4	ZHX2	8	123963750	5'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	1337183	123963750	22400272	517	127906											
FAM91A1	157769	broad.mit.edu	37	chr8	124792208	124792208	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggacagaacttaattaaaaaTattttgcttttcttagatat	5	4	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124792208	A	A	124792208	1	1	148	0	1	0	0	0	0	0	0	0	5708	1421	49	5		5	FAM91A1	8	124792208	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	828458	124792208	21571814	518	127907											
ASAP1	50807	broad.mit.edu	37	chr8	131088539	131088539	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataaaaaccttgggcccctTggagggggtagtgacacttt	13	8	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131088539	A	A	131088539	1	1	148	0	1	0	0	0	0	0	0	0	1014	1827	63	5		5	ASAP1	8	131088539	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	6296331	131088539	15275483	519	127908											
WISP1	8840	broad.mit.edu	37	chr8	134225219	134225219	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccgccatccccaccccGctgcccgctgggggtcagcc	12	21	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134225219	A	A	134225219	3	1	148	1	0	0	0	0	1	0	0	0	17499	1087	38	4	188	4	WISP1	8	134225219	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3136680	134225219	12138803	520	127909											
GML	2765	broad.mit.edu	37	chr8	143928046	143928046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaggaactgtgaggctGggggtatcaaaactgttgct	14	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143928046	T	T	143928046	2	4	148	1	0	0	0	0	0	0	0	1	6556	1335	47	2		2	GML	8	143928046	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	9702827	143928046	2435976	521	127910											
CYP11B1	1584	broad.mit.edu	37	chr8	143957731	143957731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacagttccgcattcaacaGgagctccgccacgatgctgg	11	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143957731	T	T	143957731	3	4	148	1	0	0	0	0	1	0	0	0	4178	991	35	2	651	2	CYP11B1	8	143957731	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	29685	143957731	2406291	522	127911											
CPSF1	29894	broad.mit.edu	37	chr8	145622835	145622835	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggggctgaagagggagcccGaatccccatacagcatctcc	12	13	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145622835	A	A	145622835	3	1	148	1	0	0	0	0	1	0	0	0	3856	1059	37	4	2147	4	CPSF1	8	145622835	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1665104	145622835	741187	523	127912											
KIFC2	90990	broad.mit.edu	37	chr8	145695058	145695058	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcctttgcagccatcctGaccctttttcagagttccct	6	16	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145695058	T	T	145695058	1	4	148	0	1	0	0	0	0	0	0	0	8383	1305	45	3		3	KIFC2	8	145695058	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	72223	145695058	668964	524	127913											
ZNF34	80778	broad.mit.edu	37	chr8	145998963	145998963	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggatgaggtgtgtgctttgGctgaaaactttgccacagtc	13	7	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145998963	C	C	145998963	3	2	148	1	0	0	0	0	1	0	0	0	17982	1194	42	4	315	4	ZNF34	8	145998963	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	303905	145998963	365059	525	127914											
NOL6	65083	broad.mit.edu	37	chr9	33469225	33469225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcccctgcaggactctgcCctcggtaccaggcagagcgc	11	17	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33469225	A	A	33469225	3	1	148	1	0	0	0	0	1	0	0	0	10620	623	22	2	2682	2	NOL6	9	33469225	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		33469225	107744206	526	127915											
UNC13B	10497	broad.mit.edu	37	chr9	35376131	35376131	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactaccccaacctactgctAtgagtgtgaaggcctgctct	8	14	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35376131	G	G	35376131	3	3	148	1	0	0	0	0	1	0	0	0	17111	449	16	5	1529	5	UNC13B	9	35376131	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	1906906	35376131	105837300	527	127916											
UNC13B	10497	broad.mit.edu	37	chr9	35386117	35386117	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaggagaatatcccacccAggtgagcaggtccttgggcc	13	12	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35386117	T	T	35386117	1	4	148	0	1	0	0	0	0	0	0	0	17111	203	7	5		5	UNC13B	9	35386117	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	9986	35386117	105827314	528	127917											
C9orf79	286234	broad.mit.edu	37	chr9	90499594	90499594	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttcccccttctgtccctgTcctccttcctaccagggcct	6	20	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90499594	A	A	90499594	1	1	148	0	1	0	0	0	0	0	0	0	2523	1682	58	5		5	C9orf79	9	90499594	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	55113477	90499594	50713837	529	127918											
GRIN3A	116443	broad.mit.edu	37	chr9	104432627	104432627	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatacagagtgaggaagacGgcagtgatgtgcagagccac	14	8	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104432627	A	A	104432627	2	1	148	1	0	0	0	0	0	0	0	1	6849	1103	39	4		4	GRIN3A	9	104432627	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	13933033	104432627	36780804	530	127919											
OR13F1	138805	broad.mit.edu	37	chr9	107266855	107266855	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccactcagatgtacctctcCcttgccatgggctccactga	8	16	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107266855	T	T	107266855	2	4	148	1	0	0	0	0	0	0	0	1	11035	610	22	4		4	OR13F1	9	107266855	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2834228	107266855	33946576	531	127920											
OR13C9	286362	broad.mit.edu	37	chr9	107380045	107380045	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaatccctgcaaaccaggaCccaacagccatgggtacata	7	14	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107380045	G	G	107380045	2	3	148	1	0	0	0	0	0	0	0	1	11033	494	18	4		4	OR13C9	9	107380045	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	113190	107380045	33833386	532	127921											
ZNF462	58499	broad.mit.edu	37	chr9	109687218	109687218	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccaagttttcgcccatgtCttaccctcagatgaagccga	7	13	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109687218	G	G	109687218	3	3	148	1	0	0	0	0	1	0	0	0	18053	913	32	4	1031	4	ZNF462	9	109687218	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2307173	109687218	31526213	533	127922											
ACTL7B	10880	broad.mit.edu	37	chr9	111617550	111617550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccccagcgtagtcggcgcGgctggtcaggcccggcagca	15	16	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111617550	T	T	111617550	3	4	148	1	0	0	0	0	1	0	0	0	201	1116	39	1	590	1	ACTL7B	9	111617550	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1930332	111617550	29595881	534	127923											
AKNA	80709	broad.mit.edu	37	chr9	117138926	117138926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggcaggggcctgaggCttcctgttgtggcttctgga	17	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117138926	A	A	117138926	3	1	148	1	0	0	0	0	1	0	0	0	463	796	28	3	3238	3	AKNA	9	117138926	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	5521376	117138926	24074505	535	127924											
ASTN2	23245	broad.mit.edu	37	chr9	119382512	119382512	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgggagcagaagcaagtcAtggcatgggctggcaggaca	16	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119382512	G	G	119382512	1	3	148	0	1	0	0	0	0	0	0	0	1069	232	8	5		5	ASTN2	9	119382512	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2243586	119382512	21830919	536	127925											
TLR4	7099	broad.mit.edu	37	chr9	120476015	120476015	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaacttcttttcattggatAcgtttccttataagtgtctg	6	8	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120476015	T	T	120476015	3	4	148	1	0	0	0	0	1	0	0	0	16076	391	14	5	1619	5	TLR4	9	120476015	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	1093503	120476015	20737416	537	127926											
SLC2A8	29988	broad.mit.edu	37	chr9	130166264	130166264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggcctcggtcgtcgtGggtgtcatccaggtgctgtt	15	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130166264	T	T	130166264	2	4	148	1	0	0	0	0	0	0	0	1	14665	1335	47	2		2	SLC2A8	9	130166264	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	9690249	130166264	11047167	538	127927											
SPTAN1	6709	broad.mit.edu	37	chr9	131356466	131356466	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcagatatcattctctGctggaactgggtgagaagcg	11	9	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131356466	T	T	131356466	2	4	148	1	0	0	0	0	0	0	0	1	15235	1306	46	3		3	SPTAN1	9	131356466	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1190202	131356466	9856965	539	127928											
ZER1	10444	broad.mit.edu	37	chr9	131502332	131502332	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgggtccatcaaacatgatGtgggagaggacgccgcaggc	15	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131502332	A	A	131502332	2	1	148	1	0	0	0	0	0	0	0	1	17751	1368	48	4		4	ZER1	9	131502332	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	145866	131502332	9711099	540	127929											
ZER1	10444	broad.mit.edu	37	chr9	131513632	131513632	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagtctccagccccagaatCcagctccttctctctcccaa	4	19	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131513632	A	A	131513632	1	1	148	0	1	0	0	0	0	0	0	0	17751	870	30	3		3	ZER1	9	131513632	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	11300	131513632	9699799	541	127930											
BAT2L1	84726	broad.mit.edu	37	chr9	134319794	134319794	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcactcctaaaagggtGctgatgccactggggtctcc	11	13	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134319794	A	A	134319794	1	1	148	0	1	0	0	0	0	0	0	0	1325	1334	46	4		4	BAT2L1	9	134319794	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2806162	134319794	6893637	542	127931											
CEL	1056	broad.mit.edu	37	chr9	135947097	135947098	+	Frame_Shift_Ins	INS	-	C	C													actctgaggctgcccctgtgINSccccccacagatgactccaa							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135947098	C	C	135947097	7	5	148	1	0	1	1	0	0	0	0	0	3239	1306	46	0	2259	0	CEL	9	135947097	Frame_Shift_Ins	INS	-	TCGA-49-6767-01A-11D-1855-08	1627303	135947097	5266334	543	127932											
COL5A1	1289	broad.mit.edu	37	chr9	137690125	137690125	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccgtgcctgccaggtgaTtgcttttctcagaggatgtg	12	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137690125	C	C	137690125	1	2	148	0	1	0	0	0	0	0	0	0	3728	1508	52	5		5	COL5A1	9	137690125	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1743028	137690125	3523306	544	127933											
COL5A1	1289	broad.mit.edu	37	chr9	137707845	137707845	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggcagacggtgagtccacAatctgggctggcttcctggt	15	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137707845	T	T	137707845	1	4	148	0	1	0	0	0	0	0	0	0	3728	145	5	5		5	COL5A1	9	137707845	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	17720	137707845	3505586	545	127934											
FCN2	2220	broad.mit.edu	37	chr9	137774507	137774507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtgcaggcatggctgggGgcactggctcttgctctttt	15	9	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137774507	T	T	137774507	1	4	148	0	1	0	0	0	0	0	0	0	5849	1247	43	2		2	FCN2	9	137774507	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	66662	137774507	3438924	546	127935											
KCNT1	57582	broad.mit.edu	37	chr9	138678013	138678013	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcccggcagcctcacccctCcccgccctgccctgccctgc	7	26	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138678013	A	A	138678013	1	1	148	0	1	0	0	0	0	0	0	0	8161	870	30	3		3	KCNT1	9	138678013	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	903506	138678013	2535418	547	127936											
GPSM1	26086	broad.mit.edu	37	chr9	139243084	139243084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggccccccagagactctGgcctggcccacccaatgcga	10	18	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139243084	T	T	139243084	1	4	148	0	1	0	0	0	0	0	0	0	6800	1363	47	2		2	GPSM1	9	139243084	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	565071	139243084	1970347	548	127937											
SNAPC4	6621	broad.mit.edu	37	chr9	139281868	139281868	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccccagcccgcccacagCccacaccagagtgcacctgg	9	21	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139281868	T	T	139281868	1	4	148	0	1	0	0	0	0	0	0	0	14951	754	26	4		4	SNAPC4	9	139281868	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	38784	139281868	1931563	549	127938											
SNAPC4	6621	broad.mit.edu	37	chr9	139291571	139291571	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgggcagacctggggttgTgaggtagtgacagcgcctca	16	9	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139291571	A	A	139291571	1	1	148	0	1	0	0	0	0	0	0	0	14951	1711	59	5		5	SNAPC4	9	139291571	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	9703	139291571	1921860	550	127939											
TUBB8	347688	broad.mit.edu	37	chr10	93890	93890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttactgagcagaagggtacCcatcccagacccagtccccc	8	17	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93890	A	A	93890	3	1	148	1	0	0	0	0	1	0	0	0	16887	623	22	2	896	2	TUBB8	10	93890	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		93890	135440857	551	127940											
PFKP	5214	broad.mit.edu	37	chr10	3171996	3171996	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggctggagtgactgatcgCttctctgtgaccagacctgc	13	11	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3171996	G	G	3171996	1	3	148	0	1	0	0	0	0	0	0	0	11861	812	28	4		4	PFKP	10	3171996	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3078106	3171996	132362751	552	127941											
AKR1C2	1646	broad.mit.edu	37	chr10	5032332	5032332	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccgctagtgtagatgttaaGaagttcattttctgactgct	10	7	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5032332	T	T	5032332	1	4	148	0	1	0	0	0	0	0	0	0	470	957	33	3		3	AKR1C2	10	5032332	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1860336	5032332	130502415	553	127942											
ITIH2	3698	broad.mit.edu	37	chr10	7780576	7780576	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaacagatgcaggtttgtCtacgcaggggccctgtatta	11	9	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7780576	A	A	7780576	1	1	148	0	1	0	0	0	0	0	0	0	7974	928	32	3		3	ITIH2	10	7780576	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2748244	7780576	127754171	554	127943											
GATA3	2625	broad.mit.edu	37	chr10	8100557	8100557	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcggccggctcggcccgGcaggacgagaaagagtgcct	17	13	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8100557	A	A	8100557	2	1	148	1	0	0	0	0	0	0	0	1	6317	1190	42	4		4	GATA3	10	8100557	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	319981	8100557	127434190	555	127944											
GPR158	57512	broad.mit.edu	37	chr10	25887427	25887427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagactaaagatcctgccCcccaaaactcaaatcctgcg	6	15	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887427	A	A	25887427	3	1	148	1	0	0	0	0	1	0	0	0	6728	623	22	2	2914	2	GPR158	10	25887427	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	17786870	25887427	109647320	556	127945											
SYT15	83849	broad.mit.edu	37	chr10	46967663	46967663	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggggaagtcggtctcactTttgtcctccgggaacttgta	12	10	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46967663	C	C	46967663	2	2	148	1	0	0	0	0	0	0	0	1	15590	1838	64	5		5	SYT15	10	46967663	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	21080236	46967663	88567084	557	127946											
OGDHL	55753	broad.mit.edu	37	chr10	50953477	50953477	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgtctgtggatctgcttGtacatgagcggctgggtgaa	14	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50953477	C	C	50953477	4	2	148	1	0	0	0	0	0	1	0	0	10935	1372	48	4	1538	4	OGDHL	10	50953477	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3985814	50953477	84581270	558	127947											
FAM21A	387680	broad.mit.edu	37	chr10	51826489	51826489	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttggcagtgtcagtcattCcgaaattcccaaagatttga	8	9	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51826489	A	A	51826489	1	1	148	0	1	0	0	0	0	0	0	0	5587	870	30	3		3	FAM21A	10	51826489	5'Flank	SNP	C	TCGA-49-6767-01A-11D-1855-08	873012	51826489	83708258	559	127948											
PCDH15	65217	broad.mit.edu	37	chr10	55755538	55755538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatatcctgtaaaacacaAttaggagtttagtacttcag	6	7	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55755538	G	G	55755538	1	3	148	0	1	0	0	0	0	0	0	0	11605	116	4	5		5	PCDH15	10	55755538	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	3929049	55755538	79779209	560	127949											
RHOBTB1	9886	broad.mit.edu	37	chr10	62648365	62648365	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccagccccagagcctccAccaggctcttgtttgaagac	8	16	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62648365	T	T	62648365	3	4	148	1	0	0	0	0	1	0	0	0	13442	159	6	5	1053	5	RHOBTB1	10	62648365	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	6892827	62648365	72886382	561	127950											
CDHR1	92211	broad.mit.edu	37	chr10	85956519	85956519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacagagtaggggatgaGggggcacaccccaggcacat	14	12	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85956519	T	T	85956519	1	4	148	0	1	0	0	0	0	0	0	0	3148	1015	35	2		2	CDHR1	10	85956519	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	23308154	85956519	49578228	562	127951											
CDHR1	92211	broad.mit.edu	37	chr10	85961604	85961604	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaccgccacagcggtgtGctgcgcctccaggctggggc	17	14	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85961604	T	T	85961604	2	4	148	1	0	0	0	0	0	0	0	1	3148	1306	46	3		3	CDHR1	10	85961604	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	5085	85961604	49573143	563	127952											
GRID1	2894	broad.mit.edu	37	chr10	87379647	87379647	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagaagaggtccctgtaGgggctgccatgctgcagggc	18	9	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87379647	T	T	87379647	2	4	148	1	0	0	0	0	0	0	0	1	6837	987	35	2		2	GRID1	10	87379647	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1418043	87379647	48155100	564	127953											
MYOF	26509	broad.mit.edu	37	chr10	95079598	95079598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggaagatccatgatacCcacttcccagcggcatattt	7	11	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95079598	A	A	95079598	1	1	148	0	1	0	0	0	0	0	0	0	10183	638	22	2		2	MYOF	10	95079598	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	7699951	95079598	40455149	565	127954											
CWF19L1	55280	broad.mit.edu	37	chr10	101993008	101993008	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatccagagtaaagtcataGggctcaaagtctttccggaa	9	9	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101993008	T	T	101993008	2	4	148	1	0	0	0	0	0	0	0	1	4104	987	35	2		2	CWF19L1	10	101993008	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	6913410	101993008	33541739	566	127955											
SEC31B	25956	broad.mit.edu	37	chr10	102256170	102256170	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagctcctgttaagaaccaTcaccttctccatcaggtcct	5	15	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102256170	C	C	102256170	3	2	148	1	0	0	0	0	1	0	0	0	14112	1435	50	5	1420	5	SEC31B	10	102256170	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	263162	102256170	33278577	567	127956											
SLK	9748	broad.mit.edu	37	chr10	105750539	105750539	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattgacatattagcatcttGtgatcacccaaatatagtca	6	8	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105750539	C	C	105750539	3	2	148	1	0	0	0	0	1	0	0	0	14862	1377	48	4	263	4	SLK	10	105750539	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3494369	105750539	29784208	568	127957											
COL17A1	1308	broad.mit.edu	37	chr10	105794522	105794523	+	Missense_Mutation	DNP	GC	AA	AA													ctgggatgaatgacaagccgGcagctgggcagaaggaagag							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	105794523	AA	AA	105794522	3	1	148	1	0	0	0	0	1	0	0	0	3706	1203	42	4	894	4	COL17A1	10	105794522	Missense_Mutation	DNP	GC	TCGA-49-6767-01A-11D-1855-08	43983	105794522	29740225	569	127958											
COL17A1	1308	broad.mit.edu	37	chr10	105824153	105824154	+	Intron	DNP	CG	AT	AT													gctccaggatagaggcatgcCgagttcaggggtgagagagg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	105824154	AT	AT	105824153	1	1	148	0	1	0	0	0	0	0	0	0	3706	667	23	1		1	COL17A1	10	105824153	Intron	DNP	CG	TCGA-49-6767-01A-11D-1855-08	29631	105824153	29710594	570	127959											
CCDC147	159686	broad.mit.edu	37	chr10	106139682	106139682	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatcatttttattcatccaAaagacaagatatctaattat	3	6	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106139682	G	G	106139682	1	3	148	0	1	0	0	0	0	0	0	0	2807	29	1	5		5	CCDC147	10	106139682	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	315529	106139682	29395065	571	127960											
SMC3	9126	broad.mit.edu	37	chr10	112358132	112358132	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catacattatatgggttatcCttgaattttatgtttcattt	5	5	1	1	rs78928775	byFrequency;by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112358132	G	G	112358132	1	3	148	0	1	0	0	0	0	0	0	0	14898	696	24	4		4	SMC3	10	112358132	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	6218450	112358132	23176615	572	127961											
ADRA2A	150	broad.mit.edu	37	chr10	112838282	112838282	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaccgtgtgggtcatctcGgccgtcatctccttcccgcc	9	17	5	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112838282	T	T	112838282	2	4	148	1	0	0	0	0	0	0	0	1	337	1103	39	1		1	ADRA2A	10	112838282	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	480150	112838282	22696465	573	127962											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118355819	118355819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagcaagactccaggcCtgagcaggattacaggtaag	13	9	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118355819	A	A	118355819	3	1	148	1	0	0	0	0	1	0	0	0	12245	680	24	2	577	2	PNLIPRP1	10	118355819	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	5517537	118355819	17178928	574	127963											
VAX1	11023	broad.mit.edu	37	chr10	118897512	118897512	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgttcttcgagacccggGcagcctcggcgtccgagtgg	16	14	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118897512	C	C	118897512	3	2	148	1	0	0	0	0	1	0	0	0	17261	1203	42	4	1100	4	VAX1	10	118897512	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	541693	118897512	16637235	575	127964											
EIF3A	8661	broad.mit.edu	37	chr10	120810820	120810820	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagccttttcacgttctagcTgcattgtagtaatctgcaag	9	9	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120810820	A	A	120810820	3	1	148	1	0	0	0	0	1	0	0	0	5052	1580	55	5	1970	5	EIF3A	10	120810820	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1913308	120810820	14723927	576	127965											
FAM45A	404636	broad.mit.edu	37	chr10	120867384	120867384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgctttgtaagatgggatGttaaaactgattccactaag	10	5	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120867384	T	T	120867384	1	4	148	0	1	0	0	0	0	0	0	0	5615	1392	48	3		3	FAM45A	10	120867384	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	56564	120867384	14667363	577	127966											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122273574	122273574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttaattagatgatcacatTtaagaaatctcagttacacc	4	9	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122273574	A	A	122273574	1	1	148	0	1	0	0	0	0	0	0	0	12389	1856	64	5		5	PPAPDC1A	10	122273574	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1406190	122273574	13261173	578	127967											
DMBT1	1755	broad.mit.edu	37	chr10	124380926	124380926	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagacctggggctccctctCttggggtggagtttgctcca	13	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124380926	T	T	124380926	1	4	148	0	1	0	0	0	0	0	0	0	4617	928	32	4		4	DMBT1	10	124380926	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2107352	124380926	11153821	579	127968											
CPXM2	119587	broad.mit.edu	37	chr10	125506688	125506688	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcaaattcttaatgcattTtggaagcccagatgttttcc	7	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125506688	A	A	125506688	1	1	148	0	1	0	0	0	0	0	0	0	3870	1856	64	5		5	CPXM2	10	125506688	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1125762	125506688	10028059	580	127969											
CPXM2	119587	broad.mit.edu	37	chr10	125506699	125506699	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatgcattttggaagcccaGatgttttcctctctgaaagc	8	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125506699	C	C	125506699	1	2	148	0	1	0	0	0	0	0	0	0	3870	957	33	4		4	CPXM2	10	125506699	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	11	125506699	10028048	581	127970											
JAKMIP3	282973	broad.mit.edu	37	chr10	133930853	133930853	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcaagaccgtgctgctGtccgaggccaaggaggaggc	16	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133930853	C	C	133930853	2	2	148	1	0	0	0	0	0	0	0	1	8012	1364	48	4		4	JAKMIP3	10	133930853	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	8424154	133930853	1603894	582	127971											
SYCE1	93426	broad.mit.edu	37	chr10	135369500	135369500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccttccttgagcagctGctccttgctgctgtccaggg	10	15	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135369500	T	T	135369500	3	4	148	1	0	0	0	0	1	0	0	0	15546	1328	46	3	538	3	SYCE1	10	135369500	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1438647	135369500	165247	583	127972											
TALDO1	6888	broad.mit.edu	37	chr11	763637	763637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgcacaggtcggcgcgGggcaggcaggggtggcggct	23	9	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	763637	T	T	763637	1	4	148	0	1	0	0	0	0	0	0	0	15662	1247	43	2		2	TALDO1	11	763637	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08		763637	134242879	584	127973											
MUC5B	727897	broad.mit.edu	37	chr11	1269244	1269244	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactggatccacggccaccCcgtcctccaccccagggacc	8	22	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1269244	G	G	1269244	3	3	148	1	0	0	0	0	1	0	0	0	10073	623	22	4	11265	4	MUC5B	11	1269244	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	505607	1269244	133737272	585	127974											
SYT8	90019	broad.mit.edu	37	chr11	1857722	1857722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttcaagcgcttctcggGgcatgagcccctgggtgagc	13	13	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1857722	T	T	1857722	3	4	148	1	0	0	0	0	1	0	0	0	15599	1232	43	2	648	2	SYT8	11	1857722	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	588478	1857722	133148794	586	127975											
CHRNA10	57053	broad.mit.edu	37	chr11	3688774	3688775	+	Missense_Mutation	DNP	CC	AA	AA													ctccacgttctccacgaagtCcgccaggctggctgcagcgc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	3688775	AA	AA	3688774	3	1	148	1	0	0	0	0	1	0	0	0	3413	855	30	3	777	3	CHRNA10	11	3688774	Missense_Mutation	DNP	CC	TCGA-49-6767-01A-11D-1855-08	1831052	3688774	131317742	587	127976											
OR52B4	143496	broad.mit.edu	37	chr11	4389409	4389409	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctgttcccaagaagggcGgtgacataggaaatgaagaa	14	6	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4389409	A	A	4389409	2	1	148	1	0	0	0	0	0	0	0	1	11206	1103	39	4		4	OR52B4	11	4389409	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	700635	4389409	130617107	588	127977											
OR51D1	390038	broad.mit.edu	37	chr11	4661968	4661968	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagatctgttcaagggtcctCtgtatgttctcacaaggtgg	12	8	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4661968	A	A	4661968	2	1	148	1	0	0	0	0	0	0	0	1	11187	900	32	3		3	OR51D1	11	4661968	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	272559	4661968	130344548	589	127978											
OR51E1	143503	broad.mit.edu	37	chr11	4674283	4674283	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccttctgccgctccaataTcctttcccattcctactgcc	4	19	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4674283	C	C	4674283	3	2	148	1	0	0	0	0	1	0	0	0	11188	1435	50	5	529	5	OR51E1	11	4674283	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	12315	4674283	130332233	590	127979											
OR51F2	119694	broad.mit.edu	37	chr11	4842747	4842747	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtactggatctccatcccTttttgtctcctatatgttgt	6	11	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4842747	A	A	4842747	2	1	148	1	0	0	0	0	0	0	0	1	11191	1596	56	5		5	OR51F2	11	4842747	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	168464	4842747	130163769	591	127980											
OR51F2	119694	broad.mit.edu	37	chr11	4843386	4843386	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcaacacctgcacatcCcacatcagtgctgtttccat	5	16	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4843386	A	A	4843386	2	1	148	1	0	0	0	0	0	0	0	1	11191	610	22	2		2	OR51F2	11	4843386	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	639	4843386	130163130	592	127981											
OR51G2	81282	broad.mit.edu	37	chr11	4936493	4936493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatggaaacatagtgcaagGggtggcagatagccacaaag	14	6	0	1	rs148695983		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4936493	T	T	4936493	3	4	148	1	0	0	0	0	1	0	0	0	11193	1232	43	2	547	2	OR51G2	11	4936493	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	93107	4936493	130070023	593	127982											
OR51A4	401666	broad.mit.edu	37	chr11	4968387	4968387	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcttgtgttggtaaaatagGaatatctgtaaatttagtag	10	2	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4968387	T	T	4968387	1	4	148	0	1	0	0	0	0	0	0	0	11181	1189	41	3		3	OR51A4	11	4968387	5'Flank	SNP	G	TCGA-49-6767-01A-11D-1855-08	31894	4968387	130038129	594	127983											
OR51V1	283111	broad.mit.edu	37	chr11	5221548	5221548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaatgtaccggtcaaagGccatagtgaggaggacagag	14	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5221548	T	T	5221548	3	4	148	1	0	0	0	0	1	0	0	0	11201	1203	42	3	585	3	OR51V1	11	5221548	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	253161	5221548	129784968	595	127984											
OR52L1	338751	broad.mit.edu	37	chr11	6007894	6007894	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggaggaggccagaacCaggtcgatggcagctagcat	16	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6007894	A	A	6007894	2	1	148	1	0	0	0	0	0	0	0	1	11219	581	21	2		2	OR52L1	11	6007894	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	786346	6007894	128998622	596	127985											
NLRP14	338323	broad.mit.edu	37	chr11	7083644	7083644	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacccaaacctgaggagccTggaccttgggaacaacgatt	10	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7083644	A	A	7083644	3	1	148	1	0	0	0	0	1	0	0	0	10571	1580	55	5	2919	5	NLRP14	11	7083644	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1075750	7083644	127922872	597	127986											
SOX6	55553	broad.mit.edu	37	chr11	16010816	16010816	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacaagatgagtggaaagCgttattttgtggataatgtc	12	3	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16010816	T	T	16010816	1	4	148	0	1	0	0	0	0	0	0	0	15069	783	27	4		4	SOX6	11	16010816	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	8927172	16010816	118995700	598	127987											
PIK3C2A	5286	broad.mit.edu	37	chr11	17190358	17190358	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaatttgctgtcgatctctCttcaagaagaacagcatccc	6	12	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17190358	G	G	17190358	3	3	148	1	0	0	0	0	1	0	0	0	12004	922	32	4	4257	4	PIK3C2A	11	17190358	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1179542	17190358	117816158	599	127988											
LUZP2	338645	broad.mit.edu	37	chr11	25004827	25004827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagcttccagatgcagcGgccaaaagcaaggtacctac	9	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25004827	T	T	25004827	2	4	148	1	0	0	0	0	0	0	0	1	9174	1103	39	1		1	LUZP2	11	25004827	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	7814469	25004827	110001689	600	127989											
PAX6	5080	broad.mit.edu	37	chr11	31811563	31811563	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgacacaccaggggaaatGagtcctagaagtggatgaaa	12	7	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31811563	T	T	31811563	2	4	148	1	0	0	0	0	0	0	0	1	11577	1277	45	3		3	PAX6	11	31811563	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	6806736	31811563	103194953	601	127990											
QSER1	79832	broad.mit.edu	37	chr11	32956353	32956353	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcccaatctggggatgcAgtcagtgtcaagattgaaga	13	7	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32956353	T	T	32956353	2	4	148	1	0	0	0	0	0	0	0	1	12990	175	7	5		5	QSER1	11	32956353	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	1144790	32956353	102050163	602	127991											
NR1H3	10062	broad.mit.edu	37	chr11	47282902	47282902	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcacccccccaaatcctgCcccagctcagcccggaacaa	5	22	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47282902	T	T	47282902	3	4	148	1	0	0	0	0	1	0	0	0	10713	739	26	4	624	4	NR1H3	11	47282902	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	14326549	47282902	87723614	603	127992											
OR4A16	81327	broad.mit.edu	37	chr11	55110712	55110712	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgttacagaatttgtcctCctgggcctcactcaagatcc	7	12	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55110712	A	A	55110712	2	1	148	1	0	0	0	0	0	0	0	1	11135	842	30	3		3	OR4A16	11	55110712	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	7827810	55110712	79895804	604	127993											
OR4C16	219428	broad.mit.edu	37	chr11	55339546	55339546	+	5'Flank	DEL	T	-	-													gcacagcataaattaattccTtttttttttgcaggtagacc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55339546	-	-	55339546	6	5	148	0	1	1	0	1	0	0	0	0	11143	1624	56	0		0	OR4C16	11	55339546	5'Flank	DEL	T	TCGA-49-6767-01A-11D-1855-08	228834	55339546	79666970	605	127994											
OR4P4	81300	broad.mit.edu	37	chr11	55406106	55406106	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaagaaagaccatttcCtataataactgtatgataca	6	7	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55406106	A	A	55406106	2	1	148	1	0	0	0	0	0	0	0	1	11174	668	24	2		2	OR4P4	11	55406106	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	66560	55406106	79600410	606	127995											
OR5L1	219437	broad.mit.edu	37	chr11	55579446	55579446	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagctcttaggatccccttCtatagatctaatgtgattaa	6	8	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579446	A	A	55579446	3	1	148	1	0	0	0	0	1	0	0	0	11264	912	32	3	506	3	OR5L1	11	55579446	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	173340	55579446	79427070	607	127996											
OR8J3	81168	broad.mit.edu	37	chr11	55904620	55904620	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctattgtttctggtatgtaaGtatcagagcaagataatgct	9	5	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55904620	C	C	55904620	3	2	148	1	0	0	0	0	1	0	0	0	11336	1029	36	4	374	4	OR8J3	11	55904620	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	325174	55904620	79101896	608	127997											
OR5T1	390155	broad.mit.edu	37	chr11	56043707	56043707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatatgcctcctctgcttgCtatttcttgttctgacactc	5	12	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56043707	A	A	56043707	3	1	148	1	0	0	0	0	1	0	0	0	11275	797	28	3	595	3	OR5T1	11	56043707	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	139087	56043707	78962809	609	127998											
OR5T1	390155	broad.mit.edu	37	chr11	56043777	56043777	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgggctctattgagatagtCactatcctgattgtcctgat	10	8	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56043777	G	G	56043777	2	3	148	1	0	0	0	0	0	0	0	1	11275	813	29	4		4	OR5T1	11	56043777	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	70	56043777	78962739	610	127999											
OR5M3	219482	broad.mit.edu	37	chr11	56237320	56237320	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgcagaatggcaatgaggatGaataagtaagagatgataat	12	3	0	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56237320	C	C	56237320	3	2	148	1	0	0	0	0	1	0	0	0	11269	1281	45	4	271	4	OR5M3	11	56237320	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	193543	56237320	78769196	611	128000											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57080055	57080055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttcagctcagctccagCtccccgccttgcaccgccac	7	21	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57080055	A	A	57080055	3	1	148	1	0	0	0	0	1	0	0	0	16443	797	28	3	3110	3	TNKS1BP1	11	57080055	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	842735	57080055	77926461	612	128001											
MS4A14	84689	broad.mit.edu	37	chr11	60183058	60183058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatctttggaggctatgCtttcttcaagttaacactct	7	8	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60183058	A	A	60183058	3	1	148	1	0	0	0	0	1	0	0	0	9952	797	28	3	635	3	MS4A14	11	60183058	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3103003	60183058	74823458	613	128002											
SLC15A3	51296	broad.mit.edu	37	chr11	60714150	60714150	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgccaggcccacacagccCacagggatgctgtagcccag	11	15	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60714150	A	A	60714150	2	1	148	1	0	0	0	0	0	0	0	1	14513	581	21	2		2	SLC15A3	11	60714150	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	531092	60714150	74292366	614	128003											
CD6	923	broad.mit.edu	37	chr11	60783254	60783254	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctggctcggactcagactAtgagcactatgacttcagcg	10	12	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60783254	T	T	60783254	3	4	148	1	0	0	0	0	1	0	0	0	3058	449	16	5	1491	5	CD6	11	60783254	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	69104	60783254	74223262	615	128004											
DDB1	1642	broad.mit.edu	37	chr11	61090631	61090631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggatccagatactaccCacatctcagacatctgctga	8	13	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61090631	A	A	61090631	1	1	148	0	1	0	0	0	0	0	0	0	4356	609	21	2		2	DDB1	11	61090631	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	307377	61090631	73915885	616	128005											
AHNAK	79026	broad.mit.edu	37	chr11	62298829	62298829	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acattcgctttggacaggttCacatcaaattctggcccctc	7	13	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62298829	A	A	62298829	2	1	148	1	0	0	0	0	0	0	0	1	414	813	29	3		3	AHNAK	11	62298829	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	1208198	62298829	72707687	617	128006											
STIP1	10963	broad.mit.edu	37	chr11	63965045	63965045	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtggggagagaaaaccgaGaagactatcgacagattgcc	13	7	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63965045	C	C	63965045	3	2	148	1	0	0	0	0	1	0	0	0	15403	943	33	4	906	4	STIP1	11	63965045	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1666216	63965045	71041471	618	128007											
TM7SF2	7108	broad.mit.edu	37	chr11	64882402	64882402	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaggccgtcctcaccacCatggatatcacacatgacgg	10	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64882402	T	T	64882402	2	4	148	1	0	0	0	0	0	0	0	1	16097	581	21	4		4	TM7SF2	11	64882402	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	917357	64882402	70124114	619	128008											
TM7SF2	7108	broad.mit.edu	37	chr11	64883357	64883357	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtggtcacagagcctccttCtctacaggggtgtcacacct	11	13	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64883357	G	G	64883357	1	3	148	0	1	0	0	0	0	0	0	0	16097	928	32	4		4	TM7SF2	11	64883357	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	955	64883357	70123159	620	128009											
SLC25A45	283130	broad.mit.edu	37	chr11	65146858	65146858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctcacctgcaggaaccCcccggtgcagcccgctagga	10	20	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65146858	A	A	65146858	3	1	148	1	0	0	0	0	1	0	0	0	14624	623	22	2	550	2	SLC25A45	11	65146858	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	263501	65146858	69859658	621	128010											
FOSL1	8061	broad.mit.edu	37	chr11	65664372	65664372	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgtactgagggtaggTcagaggcctggggtaactgc	19	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65664372	A	A	65664372	3	1	148	1	0	0	0	0	1	0	0	0	6045	1667	58	5	622	5	FOSL1	11	65664372	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	517514	65664372	69342144	622	128011											
CD248	57124	broad.mit.edu	37	chr11	66084155	66084155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggctgggcccagttgGtgaaagccgtgtcctggtcc	16	11	0	1	rs140616335	byFrequency	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66084155	T	T	66084155	3	4	148	1	0	0	0	0	1	0	0	0	3019	1261	44	3	1933	3	CD248	11	66084155	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	419783	66084155	68922361	623	128012											
NPAS4	266743	broad.mit.edu	37	chr11	66189700	66189700	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagccgaggggaaattgctCtacctgtctgagagtgtgag	14	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66189700	G	G	66189700	2	3	148	1	0	0	0	0	0	0	0	1	10660	900	32	4		4	NPAS4	11	66189700	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	105545	66189700	68816816	624	128013											
NPAS4	266743	broad.mit.edu	37	chr11	66189949	66189949	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttgcccagggtgacagcAtctacgacatcattgaccca	10	12	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66189949	T	T	66189949	3	4	148	1	0	0	0	0	1	0	0	0	10660	217	8	5	365	5	NPAS4	11	66189949	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	249	66189949	68816567	625	128014											
ADRBK1	156	broad.mit.edu	37	chr11	67051130	67051130	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcaatcaggagttaagccCgggactcagggtggggctga	16	9	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67051130	G	G	67051130	1	3	148	0	1	0	0	0	0	0	0	0	343	667	23	4		4	ADRBK1	11	67051130	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	861181	67051130	67955386	626	128015											
CLCF1	23529	broad.mit.edu	37	chr11	67133123	67133123	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaaaaggagagggtgatGgggaaggaggagggcagagc	22	2	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67133123	A	A	67133123	1	1	148	0	1	0	0	0	0	0	0	0	3492	1363	47	4		4	CLCF1	11	67133123	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	81993	67133123	67873393	627	128016											
CARNS1	57571	broad.mit.edu	37	chr11	67186368	67186368	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggatgactttgtcccccCgcgccgtgccacctactttt	8	17	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67186368	G	G	67186368	3	3	148	1	0	0	0	0	1	0	0	0	2682	652	23	4	520	4	CARNS1	11	67186368	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	53245	67186368	67820148	628	128017											
PDE2A	5138	broad.mit.edu	37	chr11	72292014	72292014	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaaggcaaagatctcgatGtccctggttgagaggcagaa	12	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72292014	A	A	72292014	2	1	148	1	0	0	0	0	0	0	0	1	11730	1368	48	4		4	PDE2A	11	72292014	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	5105646	72292014	62714502	629	128018											
ARAP1	116985	broad.mit.edu	37	chr11	72412831	72412831	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtccagccgaggcacctctTtgtaggcggggaaaggatgg	16	9	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72412831	A	A	72412831	1	1	148	0	1	0	0	0	0	0	0	0	840	1856	64	5		5	ARAP1	11	72412831	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	120817	72412831	62593685	630	128019											
PGM2L1	283209	broad.mit.edu	37	chr11	74065896	74065896	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaatgaagcgactgtaatCatgactgaccgaggcagtgg	12	7	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74065896	T	T	74065896	1	4	148	0	1	0	0	0	0	0	0	0	11894	841	29	4		4	PGM2L1	11	74065896	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1653065	74065896	60940620	631	128020											
MAP6	4135	broad.mit.edu	37	chr11	75298562	75298562	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctcagagaccatggaacCttgattctttatgggtgctg	12	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75298562	G	G	75298562	3	3	148	1	0	0	0	0	1	0	0	0	9356	681	24	4	461	4	MAP6	11	75298562	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1232666	75298562	59707954	632	128021											
GDPD4	220032	broad.mit.edu	37	chr11	76938781	76938781	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatacttcccctggtccctCccccaaccccacccccaact	2	24	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76938781	A	A	76938781	1	1	148	0	1	0	0	0	0	0	0	0	6390	870	30	3		3	GDPD4	11	76938781	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1640219	76938781	58067735	633	128022											
DLG2	1740	broad.mit.edu	37	chr11	83502076	83502076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcttgttcctggcacgcGgtctcagactgaaggtcgtg	14	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83502076	T	T	83502076	1	4	148	0	1	0	0	0	0	0	0	0	4595	1131	39	1		1	DLG2	11	83502076	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6563295	83502076	51504440	634	128023											
SYTL2	54843	broad.mit.edu	37	chr11	85445402	85445402	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatggctccagggagtttgGggaagagttgtcttctaaag	14	5	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85445402	A	A	85445402	3	1	148	1	0	0	0	0	1	0	0	0	15602	1232	43	4	4370	4	SYTL2	11	85445402	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1943326	85445402	49561114	635	128024											
GRM5	2915	broad.mit.edu	37	chr11	88582937	88582937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttctccaggcacaggtgCgttatgaaatttaagctcta	8	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88582937	A	A	88582937	1	1	148	0	1	0	0	0	0	0	0	0	6866	783	27	3		3	GRM5	11	88582937	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3137535	88582937	46423579	636	128025											
TYR	7299	broad.mit.edu	37	chr11	88911910	88911910	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccacaaatcctaacttactCagcccagcatcattcttctc	2	17	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88911910	A	A	88911910	2	1	148	1	0	0	0	0	0	0	0	1	16939	813	29	3		3	TYR	11	88911910	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	328973	88911910	46094606	637	128026											
TYR	7299	broad.mit.edu	37	chr11	89028412	89028412	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtaggggccgtcctcactGccctgctggcagggcttgtg	16	12	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89028412	C	C	89028412	3	2	148	1	0	0	0	0	1	0	0	0	16939	1319	46	4	1486	4	TYR	11	89028412	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	116502	89028412	45978104	638	128027											
FOLH1B	219595	broad.mit.edu	37	chr11	89421795	89421795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgattttgaggtgttcttcCaacgacttggaattgcttca	9	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89421795	A	A	89421795	3	1	148	1	0	0	0	0	1	0	0	0	6038	595	21	2	682	2	FOLH1B	11	89421795	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	393383	89421795	45584721	639	128028											
CHORDC1	26973	broad.mit.edu	37	chr11	89947237	89947237	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcttgaatgatgtgttccTgaaatttgggttttaattca	11	4	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89947237	C	C	89947237	3	2	148	1	0	0	0	0	1	0	0	0	3396	1580	55	5	752	5	CHORDC1	11	89947237	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	525442	89947237	45059279	640	128029											
FAT3	120114	broad.mit.edu	37	chr11	92613738	92613738	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaacttggcatttttgtggCaagatgtttcaagcaatcaa	9	6	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92613738	T	T	92613738	1	4	148	0	1	0	0	0	0	0	0	0	5748	725	25	4		4	FAT3	11	92613738	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2666501	92613738	42392778	641	128030											
GPR83	10888	broad.mit.edu	37	chr11	94126755	94126755	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacaccctttgtgattgaGatccggggtttcaaggggtg	14	7	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94126755	C	C	94126755	3	2	148	1	0	0	0	0	1	0	0	0	6778	932	33	4	736	4	GPR83	11	94126755	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1513017	94126755	40879761	642	128031											
TRPC6	7225	broad.mit.edu	37	chr11	101359573	101359573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagattactgaaacccaactGtgattccctgaaattttcac	5	10	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101359573	T	T	101359573	1	4	148	0	1	0	0	0	0	0	0	0	16708	1392	48	3		3	TRPC6	11	101359573	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	7232818	101359573	33646943	643	128032											
MMP13	4322	broad.mit.edu	37	chr11	102822815	102822815	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccggtgtaggtgtagataGgaaacatgagtgctccaggg	16	6	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102822815	C	C	102822815	3	2	148	1	0	0	0	0	1	0	0	0	9745	1000	35	4	714	4	MMP13	11	102822815	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1463242	102822815	32183701	644	128033											
DYNC2H1	79659	broad.mit.edu	37	chr11	103060300	103060300	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggagatatgtaggtcttaGagcagcacagtttcaaaacc	10	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103060300	C	C	103060300	1	2	148	0	1	0	0	0	0	0	0	0	4886	957	33	4		4	DYNC2H1	11	103060300	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	237485	103060300	31946216	645	128034											
GUCY1A2	2977	broad.mit.edu	37	chr11	106697537	106697537	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggctcagctgccaggatgTagtacagatgtcaccggcag	14	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106697537	G	G	106697537	1	3	148	0	1	0	0	0	0	0	0	0	6958	1653	57	5		5	GUCY1A2	11	106697537	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	3637237	106697537	28308979	646	128035											
ATM	472	broad.mit.edu	37	chr11	108175670	108175670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactaaaagcactttacaGgattaaatctataacctcta	3	11	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108175670	T	T	108175670	1	4	148	0	1	0	0	0	0	0	0	0	1113	1015	35	2		2	ATM	11	108175670	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1478133	108175670	26830846	647	128036											
FDX1	2230	broad.mit.edu	37	chr11	110327477	110327477	+	Intron	DEL	C	-	-													ctctgacctcaagtgatctgCctgctttggcctcctaaagt							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110327477	-	-	110327477	6	5	148	0	1	1	0	1	0	0	0	0	5861	754	26	0		0	FDX1	11	110327477	Intron	DEL	C	TCGA-49-6767-01A-11D-1855-08	2151807	110327477	24679039	648	128037											
ANKK1	255239	broad.mit.edu	37	chr11	113266829	113266829	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attatccgagtggcggcaggCatgcggccctccctacagcc	12	15	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113266829	T	T	113266829	2	4	148	1	0	0	0	0	0	0	0	1	631	697	25	4		4	ANKK1	11	113266829	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2939352	113266829	21739687	649	128038											
HTR3A	3359	broad.mit.edu	37	chr11	113857205	113857205	+	Intron	DEL	C	-	-													ctgggagcagagcctgtttgCcccaggcttcccacaagctc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113857205	-	-	113857205	6	5	148	0	1	1	0	1	0	0	0	0	7514	754	26	0		0	HTR3A	11	113857205	Intron	DEL	C	TCGA-49-6767-01A-11D-1855-08	590376	113857205	21149311	650	128039											
DSCAML1	57453	broad.mit.edu	37	chr11	117310239	117310239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaaagagagctgggggtGgaaggaggctcgccagggaa	19	6	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117310239	T	T	117310239	1	4	148	0	1	0	0	0	0	0	0	0	4809	1363	47	2		2	DSCAML1	11	117310239	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3453034	117310239	17696277	651	128040											
AMICA1	120425	broad.mit.edu	37	chr11	118081381	118081381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacgcggttctggaagcgcCcaataggcacactgagattg	13	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118081381	A	A	118081381	3	1	148	1	0	0	0	0	1	0	0	0	574	623	22	2	967	2	AMICA1	11	118081381	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	771142	118081381	16925135	652	128041											
HYOU1	10525	broad.mit.edu	37	chr11	118923183	118923183	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagggggttcttgcccagctCccgctctcttggtgagtagg	14	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118923183	T	T	118923183	1	4	148	0	1	0	0	0	0	0	0	0	7540	870	30	4		4	HYOU1	11	118923183	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	841802	118923183	16083333	653	128042											
ASAM	79827	broad.mit.edu	37	chr11	123007009	123007009	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggattccaccactggtgtCttcgcgcatactcagttaaa	8	12	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123007009	A	A	123007009	1	1	148	0	1	0	0	0	0	0	0	0	1013	928	32	3		3	ASAM	11	123007009	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4083826	123007009	11999507	654	128043											
OR6T1	219874	broad.mit.edu	37	chr11	123814283	123814283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgagatggtgtgatccCccgtgaggatgacgacaagc	13	9	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123814283	A	A	123814283	3	1	148	1	0	0	0	0	1	0	0	0	11304	623	22	2	711	2	OR6T1	11	123814283	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	807274	123814283	11192233	655	128044											
FLI1	2313	broad.mit.edu	37	chr11	128638221	128638221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccccactctctggggGggcagggagcatctaaacct	11	14	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128638221	T	T	128638221	1	4	148	0	1	0	0	0	0	0	0	0	5981	1247	43	2		2	FLI1	11	128638221	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	4823938	128638221	6368295	656	128045											
ZBTB44	29068	broad.mit.edu	37	chr11	130131495	130131495	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttaattgatagagtggCtgtgtaagcatattctaaaa	10	3	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130131495	T	T	130131495	3	4	148	1	0	0	0	0	1	0	0	0	17671	797	28	4	1107	4	ZBTB44	11	130131495	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1493274	130131495	4875021	657	128046											
ADAMTS15	170689	broad.mit.edu	37	chr11	130343194	130343194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcccggcccatcctggaGccgctgaccgtggaggtcct	13	16	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130343194	T	T	130343194	3	4	148	1	0	0	0	0	1	0	0	0	260	962	34	3	2361	3	ADAMTS15	11	130343194	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	211699	130343194	4663322	658	128047											
NCAPD3	23310	broad.mit.edu	37	chr11	134086941	134086941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaatgatagaacaatgCcaccagtgtactatgggaaa	8	7	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134086941	A	A	134086941	3	1	148	1	0	0	0	0	1	0	0	0	10301	739	26	3	4357	3	NCAPD3	11	134086941	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3743747	134086941	919575	659	128048											
RAD52	5893	broad.mit.edu	37	chr12	1025913	1025913	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgttcggtcggcagctgTtgtatcttgcctcctccaca	9	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1025913	G	G	1025913	3	3	148	1	0	0	0	0	1	0	0	0	13099	1725	60	5	659	5	RAD52	12	1025913	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08		1025913	132825982	660	128049											
CACNA2D4	93589	broad.mit.edu	37	chr12	1965438	1965438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgatgctccctcactgcCatgagggtgtgtgtctcaat	13	10	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1965438	A	A	1965438	1	1	148	0	1	0	0	0	0	0	0	0	2577	609	21	2		2	CACNA2D4	12	1965438	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	939525	1965438	131886457	661	128050											
C12orf5	57103	broad.mit.edu	37	chr12	4430314	4430314	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccttcggggatgacgtgcGaggccgcctcggcctatggc	17	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4430314	A	A	4430314	1	1	148	0	1	0	0	0	0	0	0	0	1707	1073	37	4		4	C12orf5	12	4430314	5'Flank	SNP	G	TCGA-49-6767-01A-11D-1855-08	2464876	4430314	129421581	662	128051											
FGF23	8074	broad.mit.edu	37	chr12	4479814	4479814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgggagtacgggggtgGgttcatgcctggcaggaagg	20	6	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4479814	T	T	4479814	3	4	148	1	0	0	0	0	1	0	0	0	5909	1232	43	2	308	2	FGF23	12	4479814	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	49500	4479814	129372081	663	128052											
DYRK4	8798	broad.mit.edu	37	chr12	4705718	4705718	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacactgatgtttctatcccCatttcccaccctgccggcca	6	17	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4705718	T	T	4705718	1	4	148	0	1	0	0	0	0	0	0	0	4898	609	21	4		4	DYRK4	12	4705718	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	225904	4705718	129146177	664	128053											
GALNT8	26290	broad.mit.edu	37	chr12	4829883	4829883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccaaagccctcttcattGggctgactctggccattgct	8	15	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4829883	T	T	4829883	3	4	148	1	0	0	0	0	1	0	0	0	6281	1348	47	2	42	2	GALNT8	12	4829883	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	124165	4829883	129022012	665	128054											
GALNT8	26290	broad.mit.edu	37	chr12	4870357	4870357	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaatgaaagaggaggaGgtggcggttatgtaatgggg	20	1	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4870357	C	C	4870357	1	2	148	0	1	0	0	0	0	0	0	0	6281	1015	35	4		4	GALNT8	12	4870357	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	40474	4870357	128981538	666	128055											
KCNA6	3742	broad.mit.edu	37	chr12	4920341	4920341	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgagggagctggggctGctcatcttcttcctcttcat	10	12	5	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4920341	T	T	4920341	2	4	148	1	0	0	0	0	0	0	0	1	8077	1306	46	3		3	KCNA6	12	4920341	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	49984	4920341	128931554	667	128056											
NTF3	4908	broad.mit.edu	37	chr12	5603344	5603344	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagcctgctcttaacaccTgtgtttccttttcagatctt	6	12	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5603344	A	A	5603344	1	1	148	0	1	0	0	0	0	0	0	0	10791	1595	55	5		5	NTF3	12	5603344	5'UTR	SNP	T	TCGA-49-6767-01A-11D-1855-08	683003	5603344	128248551	668	128057											
VWF	7450	broad.mit.edu	37	chr12	6131273	6131273	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcctcatttttaactaaAagggaggagccaactcctcc	8	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6131273	G	G	6131273	1	3	148	0	1	0	0	0	0	0	0	0	17373	29	1	5		5	VWF	12	6131273	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	527929	6131273	127720622	669	128058											
CD163L1	283316	broad.mit.edu	37	chr12	7531657	7531658	+	Nonsense_Mutation	DNP	TC	CA	CA													tacaatcccagagagaggctTcccctccagtgcagccagaa							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	7531658	CA	CA	7531657	4	2	148	1	0	0	0	0	0	1	0	0	2998	1783	62	5	2117	5	CD163L1	12	7531657	Nonsense_Mutation	DNP	TC	TCGA-49-6767-01A-11D-1855-08	1400384	7531657	126320238	670	128059											
CD163	9332	broad.mit.edu	37	chr12	7653624	7653624	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatggagtacttttataCatgaactagattgcttacag	9	5	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7653624	A	A	7653624	1	1	148	0	1	0	0	0	0	0	0	0	2997	493	17	3		3	CD163	12	7653624	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	121967	7653624	126198271	671	128060											
FAM90A1	55138	broad.mit.edu	37	chr12	8377324	8377324	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgggatcttcttcatcGggcgggggagcccttggccc	14	14	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8377324	T	T	8377324	2	4	148	1	0	0	0	0	0	0	0	1	5703	1103	39	1		1	FAM90A1	12	8377324	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	723700	8377324	125474571	672	128061											
CLEC4E	26253	broad.mit.edu	37	chr12	8689618	8689618	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttagtacattcattaacaAtagtcattgggggtcaagca	8	6	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8689618	G	G	8689618	1	3	148	0	1	0	0	0	0	0	0	0	3547	116	4	5		5	CLEC4E	12	8689618	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	312294	8689618	125162277	673	128062											
PZP	5858	broad.mit.edu	37	chr12	9310442	9310442	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcttctacacctccctgtGaatacaacattgatttgatt	4	11	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9310442	T	T	9310442	1	4	148	0	1	0	0	0	0	0	0	0	12977	1305	45	3		3	PZP	12	9310442	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	620824	9310442	124541453	674	128063											
CLEC9A	283420	broad.mit.edu	37	chr12	10218183	10218183	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcgtctaactgcagcacGtggaagtattttatctgtga	9	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10218183	T	T	10218183	2	4	148	1	0	0	0	0	0	0	0	1	3554	1132	40	3		3	CLEC9A	12	10218183	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	907741	10218183	123633712	675	128064											
OLR1	4973	broad.mit.edu	37	chr12	10312555	10312555	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agttttccgcataaacagctCctcgttgtatatatgcacag	7	10	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10312555	G	G	10312555	3	3	148	1	0	0	0	0	1	0	0	0	10957	855	30	4	79	4	OLR1	12	10312555	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	94372	10312555	123539340	676	128065											
KLRK1	22914	broad.mit.edu	37	chr12	10531201	10531201	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctggcattttgagacatAcaagaagcctggctctcata	10	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10531201	T	T	10531201	4	4	148	1	0	0	0	0	0	1	0	0	8494	389	14	5	281	5	KLRK1	12	10531201	Nonsense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	218646	10531201	123320694	677	128066											
GRIN2B	2904	broad.mit.edu	37	chr12	13716296	13716296	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcagtttgttccggttcttCttctgggccttggaattagt	11	9	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13716296	A	A	13716296	3	1	148	1	0	0	0	0	1	0	0	0	6846	912	32	3	582	3	GRIN2B	12	13716296	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3185095	13716296	120135599	678	128067											
CAPZA3	93661	broad.mit.edu	37	chr12	18891415	18891415	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgatggaaatccagtactCttgtctcaccacaatgtaat	6	10	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18891415	A	A	18891415	2	1	148	1	0	0	0	0	0	0	0	1	2668	900	32	3		3	CAPZA3	12	18891415	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	5175119	18891415	114960480	679	128068											
SLCO1C1	53919	broad.mit.edu	37	chr12	20890206	20890206	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaggagtggaaaaaatatTgtaagaaatcacctctcaag	8	6	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20890206	C	C	20890206	2	2	148	1	0	0	0	0	0	0	0	1	14839	1826	63	5		5	SLCO1C1	12	20890206	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	1998791	20890206	112961689	680	128069											
SLCO1B3	28234	broad.mit.edu	37	chr12	21015271	21015271	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaaaatggaaaaatgaagGatttaaagtagttaaatttc	7	2	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21015271	T	T	21015271	1	4	148	0	1	0	0	0	0	0	0	0	14838	1189	41	3		3	SLCO1B3	12	21015271	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	125065	21015271	112836624	681	128070											
GYS2	2998	broad.mit.edu	37	chr12	21721852	21721852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgttatttcagaaaccGtggtgaacacgtgagcgcaa	11	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21721852	T	T	21721852	3	4	148	1	0	0	0	0	1	0	0	0	6978	1145	40	3	1389	3	GYS2	12	21721852	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	706581	21721852	112130043	682	128071											
ETNK1	55500	broad.mit.edu	37	chr12	22826403	22826403	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagagtttatgttttaaaAtttttgagtgtagttttttt	8	0	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22826403	G	G	22826403	1	3	148	0	1	0	0	0	0	0	0	0	5315	116	4	5		5	ETNK1	12	22826403	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1104551	22826403	111025492	683	128072											
PPFIBP1	8496	broad.mit.edu	37	chr12	27786528	27786528	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcttccctgtaatttcAtctttgttcctcttctccat	3	12	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27786528	T	T	27786528	1	4	148	0	1	0	0	0	0	0	0	0	12409	232	8	5		5	PPFIBP1	12	27786528	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	4960125	27786528	106065367	684	128073											
KIF21A	55605	broad.mit.edu	37	chr12	39756909	39756909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatgcatacctattacccCcgagggaatcctgtagtagt	8	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39756909	A	A	39756909	3	1	148	1	0	0	0	0	1	0	0	0	8358	623	22	2	4142	2	KIF21A	12	39756909	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	11970381	39756909	94094986	685	128074											
ADAMTS20	80070	broad.mit.edu	37	chr12	43771376	43771376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgcacactgaaaaataCataattacaagaaagaaaat	5	5	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43771376	A	A	43771376	1	1	148	0	1	0	0	0	0	0	0	0	266	493	17	3		3	ADAMTS20	12	43771376	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4014467	43771376	90080519	686	128075											
ADAMTS20	80070	broad.mit.edu	37	chr12	43833272	43833272	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaattagtgaaaaaagtAgaaaggaaaaaaagattgaa	9	0	0	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43833272	G	G	43833272	1	3	148	0	1	0	0	0	0	0	0	0	266	435	15	5		5	ADAMTS20	12	43833272	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	61896	43833272	90018623	687	128076											
TMEM117	84216	broad.mit.edu	37	chr12	44693352	44693352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctttaatgagtgtcttGttccttacaggacagttctt	8	7	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44693352	T	T	44693352	1	4	148	0	1	0	0	0	0	0	0	0	16154	1392	48	3		3	TMEM117	12	44693352	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	860080	44693352	89158543	688	128077											
NELL2	4753	broad.mit.edu	37	chr12	45004562	45004562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacataacagtaatgataagGtgtagaggaaggtagagatg	13	2	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45004562	T	T	45004562	1	4	148	0	1	0	0	0	0	0	0	0	10429	1276	44	3		3	NELL2	12	45004562	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	311210	45004562	88847333	689	128078											
PLEKHA9	51054	broad.mit.edu	37	chr12	45568460	45568460	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcaaggctgccaactgcTcagatagttggtccacttgt	9	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45568460	A	A	45568460	1	1	148	0	1	0	0	0	0	0	0	0	12158	1566	54	5		5	PLEKHA9	12	45568460	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	563898	45568460	88283435	690	128079											
ZNF641	121274	broad.mit.edu	37	chr12	48737288	48737288	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgggggcatgtgtggggtCttaacagggaatccatctct	14	8	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48737288	A	A	48737288	3	1	148	1	0	0	0	0	1	0	0	0	18184	913	32	3	535	3	ZNF641	12	48737288	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3168828	48737288	85114607	691	128080											
TROAP	10024	broad.mit.edu	37	chr12	49724266	49724266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacagcttgaagtaccagaGccctaccctccagcagaacc	8	15	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49724266	T	T	49724266	3	4	148	1	0	0	0	0	1	0	0	0	16700	962	34	3	1786	3	TROAP	12	49724266	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	986978	49724266	84127629	692	128081											
KRT85	3891	broad.mit.edu	37	chr12	52758891	52758891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttgctctcgcagcagcGctggttctggtagaactgcc	13	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52758891	T	T	52758891	3	4	148	1	0	0	0	0	1	0	0	0	8570	1087	38	3	1071	3	KRT85	12	52758891	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3034625	52758891	81093004	693	128082											
KRT6A	3853	broad.mit.edu	37	chr12	52882021	52882021	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaggaagagcaattatGgccatgggcagtgcacctta	11	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52882021	A	A	52882021	1	1	148	0	1	0	0	0	0	0	0	0	8551	1363	47	4		4	KRT6A	12	52882021	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	123130	52882021	80969874	694	128083											
HOXC12	3228	broad.mit.edu	37	chr12	54348814	54348814	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacttccgcgcgtccggggCgcagcttcccgggctgcctt	13	17	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54348814	T	T	54348814	3	4	148	1	0	0	0	0	1	0	0	0	7378	768	27	4	103	4	HOXC12	12	54348814	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1466793	54348814	79503081	695	128084											
HOXC10	3226	broad.mit.edu	37	chr12	54379592	54379592	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggccagtctcaacccgcgCgccgaacatctggaatcgcc	11	17	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54379592	A	A	54379592	2	1	148	1	0	0	0	0	0	0	0	1	7376	755	27	3		3	HOXC10	12	54379592	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	30778	54379592	79472303	696	128085											
OR6C1	390321	broad.mit.edu	37	chr12	55715043	55715043	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtcctacatatacattatCagaacaattttgagaattcc	4	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55715043	A	A	55715043	2	1	148	1	0	0	0	0	0	0	0	1	11284	816	29	3		3	OR6C1	12	55715043	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	1335451	55715043	78136852	697	128086											
ESYT1	23344	broad.mit.edu	37	chr12	56531347	56531347	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaagaccgtttcttgggggGactggtgaagggcaagtcag	16	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56531347	A	A	56531347	3	1	148	1	0	0	0	0	1	0	0	0	5306	1174	41	4	2103	4	ESYT1	12	56531347	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	816304	56531347	77320548	698	128087											
STAT6	6778	broad.mit.edu	37	chr12	57501925	57501925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagacttgggggaccagCagggagcagccaggactcac	17	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57501925	A	A	57501925	1	1	148	0	1	0	0	0	0	0	0	0	15388	725	25	3		3	STAT6	12	57501925	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	970578	57501925	76349970	699	128088											
B4GALNT1	2583	broad.mit.edu	37	chr12	58020563	58020563	+	Frame_Shift_Del	DEL	G	-	-													cactgcagccggtgtttgaaGaagagcagccggtgtttggc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58020563	-	-	58020563	7	5	148	1	0	1	0	1	0	0	0	0	1271	933	33	0	39	0	B4GALNT1	12	58020563	Frame_Shift_Del	DEL	G	TCGA-49-6767-01A-11D-1855-08	518638	58020563	75831332	700	128089											
FAM19A2	338811	broad.mit.edu	37	chr12	62147391	62147391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgttttcccaagcttgCtgtccacttaccctagttgt	6	12	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62147391	A	A	62147391	1	1	148	0	1	0	0	0	0	0	0	0	5579	812	28	3		3	FAM19A2	12	62147391	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4126828	62147391	71704504	701	128090											
TBK1	29110	broad.mit.edu	37	chr12	64875778	64875778	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caacaaatgacagctcataaGatttatattcatagctataa	4	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64875778	C	C	64875778	3	2	148	1	0	0	0	0	1	0	0	0	15759	933	33	4	995	4	TBK1	12	64875778	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2728387	64875778	68976117	702	128091											
IL22	50616	broad.mit.edu	37	chr12	68646163	68646163	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcctgataacactgctGccaagacacttcttcctgct	6	14	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68646163	T	T	68646163	1	4	148	0	1	0	0	0	0	0	0	0	7742	1334	46	3		3	IL22	12	68646163	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3770385	68646163	65205732	703	128092											
ZFC3H1	196441	broad.mit.edu	37	chr12	72026208	72026208	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatattctagcttttgtaaCcgtcttttctccatagcaat	4	10	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72026208	A	A	72026208	2	1	148	1	0	0	0	0	0	0	0	1	17759	494	18	3		3	ZFC3H1	12	72026208	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	3380045	72026208	61825687	704	128093											
NAV3	89795	broad.mit.edu	37	chr12	78591054	78591054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatatctagctaacctgGctgaacagtgcagtgctgat	9	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78591054	T	T	78591054	3	4	148	1	0	0	0	0	1	0	0	0	10279	1203	42	3	6387	3	NAV3	12	78591054	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	6564846	78591054	55260841	705	128094											
PLXNC1	10154	broad.mit.edu	37	chr12	94676281	94676281	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacccatttcctggaatgaCttgcagatcgatcgtgtctg	9	12	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94676281	T	T	94676281	1	4	148	0	1	0	0	0	0	0	0	0	12221	580	20	4		4	PLXNC1	12	94676281	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	16085227	94676281	39175614	706	128095											
C12orf48	55010	broad.mit.edu	37	chr12	102589845	102589845	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaccagtcagacaggaaatAaaagctcaaaaaggaaacag	8	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102589845	T	T	102589845	4	4	148	1	0	0	0	0	0	1	0	0	1705	363	13	5	1307	5	C12orf48	12	102589845	Nonsense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	7913564	102589845	31262050	707	128096											
GLT8D2	83468	broad.mit.edu	37	chr12	104396881	104396881	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagagaggggaaggaaacaGaaagtgccaaagtctgtaag	16	4	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104396881	A	A	104396881	1	1	148	0	1	0	0	0	0	0	0	0	6534	957	33	4		4	GLT8D2	12	104396881	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1807036	104396881	29455014	708	128097											
RFX4	5992	broad.mit.edu	37	chr12	107154838	107154838	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatattcagtcttgtagaaGttcagtgattcttctccatc	6	9	5	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107154838	A	A	107154838	1	1	148	0	1	0	0	0	0	0	0	0	13373	1044	36	4		4	RFX4	12	107154838	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2757957	107154838	26697057	709	128098											
SSH1	54434	broad.mit.edu	37	chr12	109186491	109186491	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagggcagctggctttcCggggtgccatctggggtctc	16	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109186491	A	A	109186491	2	1	148	1	0	0	0	0	0	0	0	1	15302	639	23	1		1	SSH1	12	109186491	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2031653	109186491	24665404	710	128099											
SVOP	55530	broad.mit.edu	37	chr12	109332487	109332487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgcacgcacacaccccaCcttgggtacacatacccaca	6	17	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109332487	A	A	109332487	1	1	148	0	1	0	0	0	0	0	0	0	15541	522	18	3		3	SVOP	12	109332487	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	145996	109332487	24519408	711	128100											
MYO1H	283446	broad.mit.edu	37	chr12	109847223	109847223	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctggggaaattacttccAcccaaagattttccgcattg	9	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109847223	T	T	109847223	1	4	148	0	1	0	0	0	0	0	0	0	10169	174	6	5		5	MYO1H	12	109847223	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	514736	109847223	24004672	712	128101											
CIT	11113	broad.mit.edu	37	chr12	120208591	120208591	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actttcattcctgctcaccaGaattttatcagccatctgct	4	13	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120208591	C	C	120208591	1	2	148	0	1	0	0	0	0	0	0	0	3469	957	33	4		4	CIT	12	120208591	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	10361368	120208591	13643304	713	128102											
DNAH10	196385	broad.mit.edu	37	chr12	124393958	124393958	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggagattgattttgattcGattacccagagccaagtgaa	10	6	0	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124393958	T	T	124393958	2	4	148	1	0	0	0	0	0	0	0	1	4638	1045	37	3		3	DNAH10	12	124393958	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	4185367	124393958	9457937	714	128103											
DNAH10	196385	broad.mit.edu	37	chr12	124409644	124409644	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcccgtccccttgggttaCgataacaacatcaccccttt	5	15	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124409644	T	T	124409644	2	4	148	1	0	0	0	0	0	0	0	1	4638	547	19	4		4	DNAH10	12	124409644	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	15686	124409644	9442251	715	128104											
UBC	7316	broad.mit.edu	37	chr12	125397907	125397907	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcagggtagactctttctgGatgttgtagtcagacagggt	14	6	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125397907	C	C	125397907	3	2	148	1	0	0	0	0	1	0	0	0	16968	1164	41	4	1650	4	UBC	12	125397907	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	988263	125397907	8453988	716	128105											
PIWIL1	9271	broad.mit.edu	37	chr12	130846220	130846220	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaggttcaggagtagtgttCattcttcgttgttatccttc	11	7	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130846220	T	T	130846220	1	4	148	0	1	0	0	0	0	0	0	0	12052	841	29	4		4	PIWIL1	12	130846220	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	5448313	130846220	3005675	717	128106											
P2RX2	22953	broad.mit.edu	37	chr12	133196643	133196643	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctccaagacctgcgaggTgttcggctggtgcccggtgg	16	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133196643	G	G	133196643	3	3	148	1	0	0	0	0	1	0	0	0	11434	1696	59	5	533	5	P2RX2	12	133196643	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	2350423	133196643	655252	718	128107											
TUBA3C	7278	broad.mit.edu	37	chr13	19751104	19751104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaatctacaaactggatgGtgcgcttggtcttgatggtg	12	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751104	T	T	19751104	3	4	148	1	0	0	0	0	1	0	0	0	16872	1261	44	3	341	3	TUBA3C	13	19751104	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08		19751104	95418774	719	128108											
TPTE2	93492	broad.mit.edu	37	chr13	20056582	20056582	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctgtttcactaaaggtaaGagatccatcaatggctccct	7	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20056582	C	C	20056582	1	2	148	0	1	0	0	0	0	0	0	0	16555	957	33	4		4	TPTE2	13	20056582	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	305478	20056582	95113296	720	128109											
RNF17	56163	broad.mit.edu	37	chr13	25352513	25352513	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgttcagcctccacagacaAgactcttttgaactcatcag	6	13	4	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25352513	T	T	25352513	3	4	148	1	0	0	0	0	1	0	0	0	13572	72	3	5	412	5	RNF17	13	25352513	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	5295931	25352513	89817365	721	128110											
FLT3	2322	broad.mit.edu	37	chr13	28599082	28599082	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttgaaccaggcatgcTattaaaaaattttgtttttt	5	6	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28599082	C	C	28599082	5	2	148	1	0	0	0	0	0	0	1	0	6000	1536	53	5	803	5	FLT3	13	28599082	Splice_Site	SNP	T	TCGA-49-6767-01A-11D-1855-08	3246569	28599082	86570796	722	128111											
MTUS2	23281	broad.mit.edu	37	chr13	29599271	29599271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgaggccagtctagacGttttggctaaaagggatgct	14	6	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29599271	T	T	29599271	3	4	148	1	0	0	0	0	1	0	0	0	10060	1145	40	3	468	3	MTUS2	13	29599271	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1000189	29599271	85570607	723	128112											
RXFP2	122042	broad.mit.edu	37	chr13	32365872	32365872	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctagcatggagttgcagcCccgataggactgcaactgta	11	11	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32365872	T	T	32365872	1	4	148	0	1	0	0	0	0	0	0	0	13871	638	22	4		4	RXFP2	13	32365872	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2766601	32365872	82804006	724	128113											
STARD13	90627	broad.mit.edu	37	chr13	33686964	33686964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccaccaagttgacgaCgtcgttcaggaaacacaaga	8	12	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33686964	T	T	33686964	3	4	148	1	0	0	0	0	1	0	0	0	15374	536	19	4	979	4	STARD13	13	33686964	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1321092	33686964	81482914	725	128114											
NBEA	26960	broad.mit.edu	37	chr13	35864687	35864687	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtatgtttatatattttTaaaatttccatctattatcc	3	5	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35864687	A	A	35864687	1	1	148	0	1	0	0	0	0	0	0	0	10281	1769	61	5		5	NBEA	13	35864687	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	2177723	35864687	79305191	726	128115											
FREM2	341640	broad.mit.edu	37	chr13	39262601	39262601	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agggctacttggtgagcaccGatgatcgcagcctgcccctt	12	13	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39262601	C	C	39262601	3	2	148	1	0	0	0	0	1	0	0	0	6105	1058	37	4	1122	4	FREM2	13	39262601	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3397914	39262601	75907277	727	128116											
SIAH3	283514	broad.mit.edu	37	chr13	46357452	46357452	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaaggagtctggagtcCtggtattgggaggtcccagg	15	6	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46357452	A	A	46357452	1	1	148	0	1	0	0	0	0	0	0	0	14414	696	24	2		2	SIAH3	13	46357452	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	7094851	46357452	68812426	728	128117											
HTR2A	3356	broad.mit.edu	37	chr13	47409356	47409356	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttgcagatgacggccatGatgtttgtgatgaagaaagg	13	5	1	6			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47409356	T	T	47409356	2	4	148	1	0	0	0	0	0	0	0	1	7511	1280	45	3		3	HTR2A	13	47409356	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1051904	47409356	67760522	729	128118											
NEK3	4752	broad.mit.edu	37	chr13	52728029	52728029	+	Splice_Site	DEL	C	-	-													ctatgtaagtcaatctcttaCcatgtcttcaggaaataact							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52728029	-	-	52728029	8	5	148	1	0	1	0	1	0	0	1	0	10420	521	18	0	1262	0	NEK3	13	52728029	Splice_Site	DEL	C	TCGA-49-6767-01A-11D-1855-08	5318673	52728029	62441849	730	128119											
SCEL	8796	broad.mit.edu	37	chr13	78218472	78218472	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attaaagttacaagttttatCttaataatatgtaatctaga	4	3	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78218472	G	G	78218472	1	3	148	0	1	0	0	0	0	0	0	0	14000	928	32	4		4	SCEL	13	78218472	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	25490443	78218472	36951406	731	128120											
FARP1	10160	broad.mit.edu	37	chr13	99042284	99042284	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccttctggaaaatctgtgTtgaacatcatgccttcttta	7	9	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99042284	G	G	99042284	3	3	148	1	0	0	0	0	1	0	0	0	5733	1725	60	5	1186	5	FARP1	13	99042284	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	20823812	99042284	16127594	732	128121											
DAOA	267012	broad.mit.edu	37	chr13	106118685	106118685	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctctccagcttttcaggtaGgtagcttggggttttttaca	10	8	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106118685	C	C	106118685	1	2	148	0	1	0	0	0	0	0	0	0	4265	1015	35	4		4	DAOA	13	106118685	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	7076401	106118685	9051193	733	128122											
ABHD13	84945	broad.mit.edu	37	chr13	108881888	108881888	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttgatacgatacactGgagacaattcaccctattcc	5	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108881888	T	T	108881888	4	4	148	1	0	0	0	0	0	1	0	0	78	1349	47	2	324	2	ABHD13	13	108881888	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2763203	108881888	6287990	734	128123											
MYO16	23026	broad.mit.edu	37	chr13	109459025	109459025	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagatgtctcttcgctgcAgttacacatggcgtgtgcga	11	9	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109459025	G	G	109459025	5	3	148	1	0	0	0	0	0	0	1	0	10158	202	7	5	696	5	MYO16	13	109459025	Splice_Site	SNP	A	TCGA-49-6767-01A-11D-1855-08	577137	109459025	5710853	735	128124											
ATP4B	496	broad.mit.edu	37	chr13	114307723	114307723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttccaggcctttctcccCgtaaacatccggccttaagg	7	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114307723	A	A	114307723	3	1	148	1	0	0	0	0	1	0	0	0	1150	652	23	1	627	1	ATP4B	13	114307723	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	4848698	114307723	862155	736	128125											
GAS6	2621	broad.mit.edu	37	chr13	114537745	114537745	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccacacgcaaggtgcgctCaaggaattacatgcagattc	9	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114537745	A	A	114537745	1	1	148	0	1	0	0	0	0	0	0	0	6311	841	29	3		3	GAS6	13	114537745	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	230022	114537745	632133	737	128126											
OR4L1	122742	broad.mit.edu	37	chr14	20528375	20528375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaggtcaacccttcattctCccttgtactttctccttgga	6	13	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20528375	A	A	20528375	3	1	148	1	0	0	0	0	1	0	0	0	11168	855	30	3	174	3	OR4L1	14	20528375	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		20528375	86821165	738	128127											
TMEM55B	90809	broad.mit.edu	37	chr14	20927676	20927676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggggtggggatgcagaaCatgttcccataggacagacc	14	9	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20927676	A	A	20927676	1	1	148	0	1	0	0	0	0	0	0	0	16305	493	17	3		3	TMEM55B	14	20927676	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	399301	20927676	86421864	739	128128											
OXA1L	5018	broad.mit.edu	37	chr14	23237370	23237370	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctaccttggtggggggcCattgctgcatgtaaggggaa	17	8	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23237370	T	T	23237370	2	4	148	1	0	0	0	0	0	0	0	1	11422	581	21	4		4	OXA1L	14	23237370	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2309694	23237370	84112170	740	128129											
MYH6	4624	broad.mit.edu	37	chr14	23855735	23855735	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttggcctgttccatctccTcgtccttctctgccagcttc	7	17	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23855735	A	A	23855735	3	1	148	1	0	0	0	0	1	0	0	0	10132	1551	54	5	1099	5	MYH6	14	23855735	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	618365	23855735	83493805	741	128130											
PSME2	5721	broad.mit.edu	37	chr14	24614206	24614206	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggacttgtatctacggaGgagtccagggcctcaccttg	13	10	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24614206	C	C	24614206	1	2	148	0	1	0	0	0	0	0	0	0	12813	1015	35	4		4	PSME2	14	24614206	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	758471	24614206	82735334	742	128131											
AKAP6	9472	broad.mit.edu	37	chr14	33291371	33291371	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtattaccaaacatacccCtgactgtttgggagaagaat	8	9	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33291371	T	T	33291371	3	4	148	1	0	0	0	0	1	0	0	0	455	681	24	4	4398	4	AKAP6	14	33291371	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	8677165	33291371	74058169	743	128132											
SSTR1	6751	broad.mit.edu	37	chr14	38679167	38679167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgctcgtcatcctgccCatcgtggtcttctctcgcac	8	17	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38679167	A	A	38679167	2	1	148	1	0	0	0	0	0	0	0	1	15315	581	21	2		2	SSTR1	14	38679167	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	5387796	38679167	68670373	744	128133											
FANCM	57697	broad.mit.edu	37	chr14	45645710	45645710	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattggaacatacatcagaTagcaatagacctctagatga	7	7	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45645710	C	C	45645710	2	2	148	1	0	0	0	0	0	0	0	1	5728	1403	49	5		5	FANCM	14	45645710	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	6966543	45645710	61703830	745	128134											
NID2	22795	broad.mit.edu	37	chr14	52505699	52505699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgtagaggtcacagctgCaacaaacacagtggtaattt	9	8	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52505699	A	A	52505699	1	1	148	0	1	0	0	0	0	0	0	0	10510	725	25	3		3	NID2	14	52505699	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	6859989	52505699	54843841	746	128135											
RTN1	6252	broad.mit.edu	37	chr14	60076923	60076923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaagtctgtgaatggcaGgcacttcatggactttcctt	10	9	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60076923	T	T	60076923	1	4	148	0	1	0	0	0	0	0	0	0	13836	1015	35	2		2	RTN1	14	60076923	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	7571224	60076923	47272617	747	128136											
SLC39A9	55334	broad.mit.edu	37	chr14	69909044	69909044	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagttgagaaagttacaaaCgatcaaatatttcagtctgt	8	6	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69909044	T	T	69909044	1	4	148	0	1	0	0	0	0	0	0	0	14739	551	19	4		4	SLC39A9	14	69909044	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	9832121	69909044	37440496	748	128137											
KIAA0247	9766	broad.mit.edu	37	chr14	70171520	70171520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcattactgtgggggccaGtctttggtggagggttgctg	17	6	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70171520	T	T	70171520	1	4	148	0	1	0	0	0	0	0	0	0	8235	1044	36	3		3	KIAA0247	14	70171520	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	262476	70171520	37178020	749	128138											
EIF2B2	8892	broad.mit.edu	37	chr14	75475981	75475981	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagcacatccttgcaatGtgggagtgcacaggagtcca	12	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75475981	A	A	75475981	1	1	148	0	1	0	0	0	0	0	0	0	5041	1392	48	4		4	EIF2B2	14	75475981	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	5304461	75475981	31873559	750	128139											
C14orf118	55668	broad.mit.edu	37	chr14	76633041	76633041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagcagcagtgacactgGgctctttaccaatgatgaag	12	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76633041	T	T	76633041	3	4	148	1	0	0	0	0	1	0	0	0	1754	1232	43	2	704	2	C14orf118	14	76633041	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1157060	76633041	30716499	751	128140											
GALC	2581	broad.mit.edu	37	chr14	88431915	88431915	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgggccgtcatcaaccCgcatctcccataaggcaact	7	17	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88431915	G	G	88431915	3	3	148	1	0	0	0	0	1	0	0	0	6263	652	23	4	1189	4	GALC	14	88431915	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	11798874	88431915	18917625	752	128141											
SPATA7	55812	broad.mit.edu	37	chr14	88893026	88893026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagatcaacggatagaaGctgaaacccagactgaatta	8	8	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88893026	T	T	88893026	3	4	148	1	0	0	0	0	1	0	0	0	15130	971	34	3	845	3	SPATA7	14	88893026	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	461111	88893026	18456514	753	128142											
C14orf143	90141	broad.mit.edu	37	chr14	90420856	90420856	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacccggcagagtgagacCcagacacgggagaggaagcg	15	12	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90420856	A	A	90420856	1	1	148	0	1	0	0	0	0	0	0	0	1761	638	22	2		2	C14orf143	14	90420856	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1527830	90420856	16928684	754	128143											
KIAA1409	57578	broad.mit.edu	37	chr14	94087403	94087403	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagaagtatgaattttttctCttagtaattttatgcagaaa	7	3	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94087403	G	G	94087403	1	3	148	0	1	0	0	0	0	0	0	0	8300	928	32	4		4	KIAA1409	14	94087403	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3666547	94087403	13262137	755	128144											
AHNAK2	113146	broad.mit.edu	37	chr14	105413167	105413167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcacgtccacctggccaGcctggacctccagttgggcg	12	15	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105413167	T	T	105413167	3	4	148	1	0	0	0	0	1	0	0	0	415	971	34	3	8770	3	AHNAK2	14	105413167	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	11325764	105413167	1936373	756	128145											
AHNAK2	113146	broad.mit.edu	37	chr14	105420366	105420366	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtgggccaatctgtgtGcctccttcggttgtgtctct	12	11	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105420366	T	T	105420366	2	4	148	1	0	0	0	0	0	0	0	1	415	1306	46	3		3	AHNAK2	14	105420366	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	7199	105420366	1929174	757	128146											
AHNAK2	113146	broad.mit.edu	37	chr14	105420648	105420648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctcgatcctgttctgcCctctcctctctcctgctgcc	5	19	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105420648	A	A	105420648	3	1	148	1	0	0	0	0	1	0	0	0	415	622	22	2	16251	2	AHNAK2	14	105420648	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	282	105420648	1928892	758	128147											
TMEM121	80757	broad.mit.edu	37	chr14	105995420	105995420	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcctgtggttcctttacatCttcgtgctggagatcaagct	9	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105995420	T	T	105995420	2	4	148	1	0	0	0	0	0	0	0	1	16158	903	32	4		4	TMEM121	14	105995420	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	574772	105995420	1354120	759	128148											
C15orf2	23742	broad.mit.edu	37	chr15	24921596	24921596	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatccaggtcccagggcacCcagggagacgtggcctcctt	12	15	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921596	A	A	24921596	2	1	148	1	0	0	0	0	0	0	0	1	1797	610	22	2		2	C15orf2	15	24921596	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08		24921596	77609796	760	128149											
OCA2	4948	broad.mit.edu	37	chr15	28231964	28231964	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaatagtacactcactcaCtccttgaatggagcctcttg	8	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28231964	T	T	28231964	1	4	148	0	1	0	0	0	0	0	0	0	10910	580	20	4		4	OCA2	15	28231964	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3310368	28231964	74299428	761	128150											
RYR3	6263	broad.mit.edu	37	chr15	33822838	33822838	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgttatacggccatgcaGttctcctgaggcactctttc	8	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33822838	C	C	33822838	3	2	148	1	0	0	0	0	1	0	0	0	13881	1029	36	4	339	4	RYR3	15	33822838	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	5590874	33822838	68708554	762	128151											
C15orf55	256646	broad.mit.edu	37	chr15	34647065	34647065	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtaatgtgtgtgcatgCatcatcatgagaatgtgtgt	12	5	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34647065	T	T	34647065	1	4	148	0	1	0	0	0	0	0	0	0	1816	725	25	4		4	C15orf55	15	34647065	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	824227	34647065	67884327	763	128152											
C15orf23	90417	broad.mit.edu	37	chr15	40675518	40675518	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctgagcggcggccagcCggcaggtgagggtccaagcc	18	13	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40675518	T	T	40675518	3	4	148	1	0	0	0	0	1	0	0	0	1798	652	23	4	305	4	C15orf23	15	40675518	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	6028453	40675518	61855874	764	128153											
TYRO3	7301	broad.mit.edu	37	chr15	41864678	41864678	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctaaaggccgtctcccCatccccatggtcatcttgcc	9	16	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41864678	T	T	41864678	2	4	148	1	0	0	0	0	0	0	0	1	16940	581	21	4		4	TYRO3	15	41864678	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	1189160	41864678	60666714	765	128154											
PLA2G4D	283748	broad.mit.edu	37	chr15	42379517	42379517	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgacctgactttggataAggaaacggaaggcctcattc	10	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42379517	C	C	42379517	3	2	148	1	0	0	0	0	1	0	0	0	12099	72	3	5	2292	5	PLA2G4D	15	42379517	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	514839	42379517	60151875	766	128155											
SORD	6652	broad.mit.edu	37	chr15	45360327	45360327	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatggcctggacaagtgggAgagcagatgtttaatatttc	12	7	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45360327	G	G	45360327	1	3	148	0	1	0	0	0	0	0	0	0	15047	319	11	5		5	SORD	15	45360327	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2980810	45360327	57171065	767	128156											
AP4E1	23431	broad.mit.edu	37	chr15	51242140	51242140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactactagcggaaggttgGtacactattatattctgtaa	9	6	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51242140	T	T	51242140	1	4	148	0	1	0	0	0	0	0	0	0	754	1276	44	3		3	AP4E1	15	51242140	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	5881813	51242140	51289252	768	128157											
PIGB	9488	broad.mit.edu	37	chr15	55626227	55626227	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taagtgtggcaataatccatCcatttattttagtagcctac	6	8	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55626227	G	G	55626227	1	3	148	0	1	0	0	0	0	0	0	0	11980	870	30	4		4	PIGB	15	55626227	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4384087	55626227	46905165	769	128158											
PRTG	283659	broad.mit.edu	37	chr15	55916678	55916678	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaactgttgagttccattCtgtgccgtcttggaagcaga	12	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55916678	G	G	55916678	3	3	148	1	0	0	0	0	1	0	0	0	12744	912	32	4	509	4	PRTG	15	55916678	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	290451	55916678	46614714	770	128159											
PRTG	283659	broad.mit.edu	37	chr15	55964743	55964743	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagcttgtagccctgaatAgcagctgtgtcctctacatc	8	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55964743	T	T	55964743	2	4	148	1	0	0	0	0	0	0	0	1	12744	407	15	5		5	PRTG	15	55964743	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	48065	55964743	46566649	771	128160											
HCN4	10021	broad.mit.edu	37	chr15	73617590	73617590	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtggtgaggggagctggcTgccaggaaggcctggctccc	19	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73617590	A	A	73617590	1	1	148	0	1	0	0	0	0	0	0	0	7065	1595	55	5		5	HCN4	15	73617590	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	17652847	73617590	28913802	772	128161											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84706570	84706570	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggataaacctttggaggGgtcatgatgctgctgtgaag	16	5	1	2	rs146074595		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84706570	T	T	84706570	1	4	148	0	1	0	0	0	0	0	0	0	276	1247	43	2		2	ADAMTSL3	15	84706570	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	11088980	84706570	17824822	773	128162											
NTRK3	4916	broad.mit.edu	37	chr15	88484051	88484051	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgacacagggagacagaaGagtacagaggtctagcgtgg	17	6	1	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88484051	T	T	88484051	1	4	148	0	1	0	0	0	0	0	0	0	10803	957	33	3		3	NTRK3	15	88484051	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3777481	88484051	14047341	774	128163											
ZNF774	342132	broad.mit.edu	37	chr15	90903397	90903397	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttagttggggaggaaactggGagcaaggcctagaattagaa	15	4	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90903397	T	T	90903397	4	4	148	1	0	0	0	0	0	1	0	0	18276	1175	41	3	344	3	ZNF774	15	90903397	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2419346	90903397	11627995	775	128164											
C16orf11	146325	broad.mit.edu	37	chr16	613968	613968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttctcctacttggggcCctcactggccgctgcagccc	9	19	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	613968	A	A	613968	3	1	148	1	0	0	0	0	1	0	0	0	1824	623	22	2	676	2	C16orf11	16	613968	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		613968	89740785	776	128165											
RPS2	6187	broad.mit.edu	37	chr16	2016833	2016833	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacacccactgtgaaatgCaggctcctgagctctggggg	12	14	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2016833	T	T	2016833	1	4	148	0	1	0	0	0	0	0	0	0	13742	725	25	4		4	RPS2	16	2016833	5'Flank	SNP	C	TCGA-49-6767-01A-11D-1855-08	1402865	2016833	88337920	777	128166											
MEFV	4210	broad.mit.edu	37	chr16	3297275	3297275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggacagggaggtatggGggtctgtgctgtgggtggac	21	5	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3297275	T	T	3297275	1	4	148	0	1	0	0	0	0	0	0	0	9552	1247	43	2		2	MEFV	16	3297275	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1280442	3297275	87057478	778	128167											
A2BP1	54715	broad.mit.edu	37	chr16	7760649	7760649	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttgcacctttgactgatGccaagactaggagccatgct	9	11	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7760649	A	A	7760649	3	1	148	1	0	0	0	0	1	0	0	0	3	1319	46	4	1341	4	A2BP1	16	7760649	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4463374	7760649	82594104	779	128168											
KIAA0430	9665	broad.mit.edu	37	chr16	15692615	15692615	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacctgaaaaggggtagTcccttcccacctccgtcatt	7	15	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15692615	C	C	15692615	1	2	148	0	1	0	0	0	0	0	0	0	8247	1682	58	5		5	KIAA0430	16	15692615	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	7931966	15692615	74662138	780	128169											
ANKS4B	257629	broad.mit.edu	37	chr16	21244947	21244947	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttgaaatgagctttgccCctggtgacactcttccttgt	9	11	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21244947	A	A	21244947	1	1	148	0	1	0	0	0	0	0	0	0	691	638	22	2		2	ANKS4B	16	21244947	5'Flank	SNP	C	TCGA-49-6767-01A-11D-1855-08	5552332	21244947	69109806	781	128170											
OTOA	146183	broad.mit.edu	37	chr16	21739679	21739679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggcgactgctctacacGgcctcagagactgcccagac	11	15	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21739679	T	T	21739679	3	4	148	1	0	0	0	0	1	0	0	0	11396	1116	39	1	2254	1	OTOA	16	21739679	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	494732	21739679	68615074	782	128171											
IL21R	50615	broad.mit.edu	37	chr16	27441330	27441330	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatgagggggaggccggggGagccctgagcccgcctggct	21	11	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27441330	T	T	27441330	1	4	148	0	1	0	0	0	0	0	0	0	7741	1189	41	3		3	IL21R	16	27441330	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	5701651	27441330	62913423	783	128172											
TMEM188	255919	broad.mit.edu	37	chr16	50059527	50059527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacttgcacttcgtgcattGcagcctgctaattcatttca	6	12	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50059527	T	T	50059527	1	4	148	0	1	0	0	0	0	0	0	0	16233	1334	46	3		3	TMEM188	16	50059527	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	22618197	50059527	40295226	784	128173											
SALL1	6299	broad.mit.edu	37	chr16	51176050	51176050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcggttgacccttttctGtgtctcctacaaatgtcaaa	7	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51176050	T	T	51176050	3	4	148	1	0	0	0	0	1	0	0	0	13921	1377	48	3	3899	3	SALL1	16	51176050	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1116523	51176050	39178703	785	128174											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53672256	53672256	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacagtcagcatattaattTctatttctggtatatgctct	6	7	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53672256	G	G	53672256	3	3	148	1	0	0	0	0	1	0	0	0	13661	1783	62	5	953	5	RPGRIP1L	16	53672256	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	2496206	53672256	36682497	786	128175											
GNAO1	2775	broad.mit.edu	37	chr16	56377844	56377844	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatcgccaaaaacctgcgGggctgtggactctactgagc	11	12	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56377844	T	T	56377844	2	4	148	1	0	0	0	0	0	0	0	1	6572	1219	43	2		2	GNAO1	16	56377844	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	2705588	56377844	33976909	787	128176											
AMFR	267	broad.mit.edu	37	chr16	56438863	56438863	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtccagggacaggagagtGagctccatgacaaagtctgt	14	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56438863	A	A	56438863	2	1	148	1	0	0	0	0	0	0	0	1	571	1277	45	4		4	AMFR	16	56438863	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	61019	56438863	33915890	788	128177											
SLC12A3	6559	broad.mit.edu	37	chr16	56916326	56916326	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgagctcaacaccatagCccccatcatttccaacttct	4	16	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56916326	A	A	56916326	3	1	148	1	0	0	0	0	1	0	0	0	14497	739	26	3	1636	3	SLC12A3	16	56916326	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	477463	56916326	33438427	789	128178											
CNOT1	23019	broad.mit.edu	37	chr16	58582513	58582513	+	Intron	SNP	C	A	A													ccaagaatggggaatattccCatccacaggtttaaatatag							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58582513	A	A	58582513	1	1	148	0	1	0	0	0	0	0	0	0	3649	609	21	2		2	CNOT1	16	58582513	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1666187	58582513	31772240	790	128179	553	2									
CNOT1	23019	broad.mit.edu	37	chr16	58582515	58582515	+	Intron	SNP	T	A	A													aagaatggggaatattcccaTccacaggtttaaatatagtg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58582515	A	A	58582515	1	1	148	0	1	0	0	0	0	0	0	0	3649	1450	50	5		5	CNOT1	16	58582515	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	2	58582515	31772238	791	128180	553	2									
SF3B3	23450	broad.mit.edu	37	chr16	70599217	70599217	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtttggcaggctggaacagGagctctctgagttttgacta	14	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70599217	A	A	70599217	1	1	148	0	1	0	0	0	0	0	0	0	14265	1189	41	4		4	SF3B3	16	70599217	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	12016702	70599217	19755536	792	128181											
AP1G1	164	broad.mit.edu	37	chr16	71783621	71783621	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctggtctcaaactccTgggctcaagcgatgctccca	10	15	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71783621	G	G	71783621	1	3	148	0	1	0	0	0	0	0	0	0	734	1595	55	5		5	AP1G1	16	71783621	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1184404	71783621	18571132	793	128182											
PMFBP1	83449	broad.mit.edu	37	chr16	72163128	72163128	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgatggagccttgctccCtgtgctgaaaaaataaagac	9	8	0	3	rs34703574		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72163128	A	A	72163128	3	1	148	1	0	0	0	0	1	0	0	0	12229	681	24	2	1332	2	PMFBP1	16	72163128	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	379507	72163128	18191625	794	128183											
CNTNAP4	85445	broad.mit.edu	37	chr16	76486440	76486440	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgttcacaaccacaatcTatgcccgtgacttttctgag	6	12	4	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76486440	A	A	76486440	2	1	148	1	0	0	0	0	0	0	0	1	3681	1509	53	5		5	CNTNAP4	16	76486440	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	4323312	76486440	13868313	795	128184											
CNTNAP4	85445	broad.mit.edu	37	chr16	76513434	76513434	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctatattgcaatatgacCggtgagttaatcagctttta	7	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76513434	A	A	76513434	2	1	148	1	0	0	0	0	0	0	0	1	3681	666	23	1		1	CNTNAP4	16	76513434	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	26994	76513434	13841319	796	128185											
CNTNAP4	85445	broad.mit.edu	37	chr16	76523628	76523628	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacggctctgacttaacaaGagtcagaaatactaatccag	7	10	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76523628	T	T	76523628	3	4	148	1	0	0	0	0	1	0	0	0	3681	942	33	3	1991	3	CNTNAP4	16	76523628	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	10194	76523628	13831125	797	128186											
PKD1L2	114780	broad.mit.edu	37	chr16	81181898	81181898	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaatcaggaggttgatGgggaacatgaggatggagct	16	4	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81181898	A	A	81181898	2	1	148	1	0	0	0	0	0	0	0	1	12060	1335	47	4		4	PKD1L2	16	81181898	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	4658270	81181898	9172855	798	128187											
NECAB2	54550	broad.mit.edu	37	chr16	84028085	84028085	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtcccgaggagttctgagAgtcctctgacagggactggg	17	9	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84028085	T	T	84028085	1	4	148	0	1	0	0	0	0	0	0	0	10400	319	11	5		5	NECAB2	16	84028085	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2846187	84028085	6326668	799	128188											
MTHFSD	64779	broad.mit.edu	37	chr16	86588112	86588112	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaaggacgccctggccaaAtggctttgatttcacaccac	9	13	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86588112	C	C	86588112	1	2	148	0	1	0	0	0	0	0	0	0	10027	116	4	5		5	MTHFSD	16	86588112	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2560027	86588112	3766641	800	128189											
JPH3	57338	broad.mit.edu	37	chr16	87678336	87678336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatcgacgccaccaccacCgagacctacgtgggcgagtg	12	15	0	1	rs112449440		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87678336	A	A	87678336	2	1	148	1	0	0	0	0	0	0	0	1	8032	639	23	1		1	JPH3	16	87678336	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	1090224	87678336	2676417	801	128190											
FANCA	2175	broad.mit.edu	37	chr16	89858564	89858564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcccagccggtggccaCcgcagccccctcacttccca	7	22	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89858564	A	A	89858564	1	1	148	0	1	0	0	0	0	0	0	0	5719	522	18	3		3	FANCA	16	89858564	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2180228	89858564	496189	802	128191											
KIAA0664	23277	broad.mit.edu	37	chr17	2605385	2605385	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggagggtatggcgttaccAgggccctgcaccctgaacaa	14	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2605385	G	G	2605385	1	3	148	0	1	0	0	0	0	0	0	0	8259	203	7	5		5	KIAA0664	17	2605385	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08		2605385	78589825	803	128192											
ZNF594	84622	broad.mit.edu	37	chr17	5084382	5084382	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctctctggtatgaattcTttgatgactgacaaggtgtg	10	6	3	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5084382	C	C	5084382	1	2	148	0	1	0	0	0	0	0	0	0	18151	1624	56	5		5	ZNF594	17	5084382	3'UTR	SNP	T	TCGA-49-6767-01A-11D-1855-08	2478997	5084382	76110828	804	128193											
NLRP1	22861	broad.mit.edu	37	chr17	5436132	5436132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggaccagcagagcccCctcactcaccggtacaagtt	10	16	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5436132	A	A	5436132	1	1	148	0	1	0	0	0	0	0	0	0	10566	638	22	2		2	NLRP1	17	5436132	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	351750	5436132	75759078	805	128194											
DVL2	1856	broad.mit.edu	37	chr17	7132214	7132214	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccggctgtcttagtacttaTtaaaattccaaaacaaaaca	4	10	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7132214	G	G	7132214	1	3	148	0	1	0	0	0	0	0	0	0	4876	1508	52	5		5	DVL2	17	7132214	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1696082	7132214	74062996	806	128195											
ACAP1	9744	broad.mit.edu	37	chr17	7245243	7245244	+	Intron	DNP	CC	AT	AT													tgaggatgatggcacagctcCctgttaccctccttctttcc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	7245244	AT	AT	7245243	1	1	148	0	1	0	0	0	0	0	0	0	118	638	22	2		2	ACAP1	17	7245243	Intron	DNP	CC	TCGA-49-6767-01A-11D-1855-08	113029	7245243	73949967	807	128196											
CD68	968	broad.mit.edu	37	chr17	7484873	7484874	+	3'UTR	INS	-	T	T													ctgagggggttggggtgtggINStgggggggtacccttatttc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7484874	T	T	7484873	6	5	148	0	1	1	1	0	0	0	0	0	3060	1276	44	0		0	CD68	17	7484873	3'UTR	INS	-	TCGA-49-6767-01A-11D-1855-08	239630	7484873	73710337	808	128197											
TP53	7157	broad.mit.edu	37	chr17	7576855	7576855	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtcccaagacttagtacctGaagggtgaaatattctccat	9	9	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7576855	A	A	7576855	4	1	148	1	0	0	0	0	0	1	0	0	16505	1299	45	4	291	4	TP53	17	7576855	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	91982	7576855	73618355	809	128198											
CNTROB	116840	broad.mit.edu	37	chr17	7837875	7837875	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctcaagtgagttctcCttgtggttctcctagcttgt	9	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7837875	G	G	7837875	1	3	148	0	1	0	0	0	0	0	0	0	3683	696	24	4		4	CNTROB	17	7837875	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	261020	7837875	73357335	810	128199											
PIK3R6	146850	broad.mit.edu	37	chr17	8770949	8770949	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagatgtcttgggggagcCtccacgggtgtctgtggtct	16	9	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8770949	A	A	8770949	1	1	148	1	0	0	0	0	0	0	0	0	12018	696	24	2		2	PIK3R6	17	8770949	Translation_Start_Site	SNP	C	TCGA-49-6767-01A-11D-1855-08	933074	8770949	72424261	811	128200											
GAS7	8522	broad.mit.edu	37	chr17	9829868	9829868	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggacaaagactcagccttgGcgtatggagccactgctggc	14	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9829868	C	C	9829868	1	2	148	0	1	0	0	0	0	0	0	0	6312	1218	42	4		4	GAS7	17	9829868	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1058919	9829868	71365342	812	128201											
MYH13	8735	broad.mit.edu	37	chr17	10222405	10222405	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctctcgctgatctcctccAgttccctggccagatctgag	9	16	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10222405	G	G	10222405	3	3	148	1	0	0	0	0	1	0	0	0	10126	188	7	5	2436	5	MYH13	17	10222405	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	392537	10222405	70972805	813	128202											
MYH1	4619	broad.mit.edu	37	chr17	10398136	10398136	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgagcttttgggcatgaggGaatagctctccctcatctca	10	10	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10398136	A	A	10398136	1	1	148	0	1	0	0	0	0	0	0	0	10123	1189	41	4		4	MYH1	17	10398136	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	175731	10398136	70797074	814	128203											
DNAH9	1770	broad.mit.edu	37	chr17	11666936	11666936	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtccaagatcaggtaaGgagatatgttgagctcaaca	11	6	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11666936	T	T	11666936	1	4	148	0	1	0	0	0	0	0	0	0	4648	1015	35	2		2	DNAH9	17	11666936	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1268800	11666936	69528274	815	128204											
MYOCD	93649	broad.mit.edu	37	chr17	12639334	12639334	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaccaaataatttaaagTatagcttcactcttacctaa	2	8	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12639334	C	C	12639334	1	2	148	0	1	0	0	0	0	0	0	0	10181	1653	57	5		5	MYOCD	17	12639334	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	972398	12639334	68555876	816	128205											
TRPV2	51393	broad.mit.edu	37	chr17	16332321	16332321	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagggggtggcccaccgGgactcttttggcctcatcag	15	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16332321	T	T	16332321	1	4	148	0	1	0	0	0	0	0	0	0	16721	1247	43	2		2	TRPV2	17	16332321	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3692987	16332321	64862889	817	128206											
MYO15A	51168	broad.mit.edu	37	chr17	18039722	18039722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcactcaagggctgtgccCgtccctaggagacaatgcga	12	12	2	1	rs117767901	by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18039722	A	A	18039722	1	1	148	0	1	0	0	0	0	0	0	0	10157	667	23	1		1	MYO15A	17	18039722	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1707401	18039722	63155488	818	128207											
MYO15A	51168	broad.mit.edu	37	chr17	18044107	18044107	+	Frame_Shift_Del	DEL	C	-	-													cctgccactgccaggtgcaaCcccttgttcatgcgttgcct							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18044107	-	-	18044107	7	5	148	1	0	1	0	1	0	0	0	0	10157	506	18	0	5441	0	MYO15A	17	18044107	Frame_Shift_Del	DEL	C	TCGA-49-6767-01A-11D-1855-08	4385	18044107	63151103	819	128208											
CYTSB	92521	broad.mit.edu	37	chr17	20107987	20107987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggggactgatgctttgGgcccaaatgtcgatggaaca	14	8	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20107987	T	T	20107987	3	4	148	1	0	0	0	0	1	0	0	0	4243	1232	43	2	679	2	CYTSB	17	20107987	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2063880	20107987	61087223	820	128209											
KCNJ12	3768	broad.mit.edu	37	chr17	21318671	21318671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggatgaccgcggccagccGggccaacccctacagcatcg	13	17	0	1	rs3752032	byFrequency;by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21318671	T	T	21318671	3	4	148	1	0	0	0	0	1	0	0	0	8116	1116	39	1	19	1	KCNJ12	17	21318671	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1210684	21318671	59876539	821	128210											
KIAA0100	9703	broad.mit.edu	37	chr17	26965369	26965369	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtcactgcccacacgccaGcagaggtggtccacagttag	12	13	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26965369	A	A	26965369	2	1	148	1	0	0	0	0	0	0	0	1	8224	963	34	4		4	KIAA0100	17	26965369	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	5646698	26965369	54229841	822	128211											
SEZ6	124925	broad.mit.edu	37	chr17	27306716	27306716	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttgatttccacgccataGccagggtagacagagatgta	10	10	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27306716	A	A	27306716	2	1	148	1	0	0	0	0	0	0	0	1	14255	958	34	4		4	SEZ6	17	27306716	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	341347	27306716	53888494	823	128212											
ANKRD13B	124930	broad.mit.edu	37	chr17	27935036	27935036	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgagtacccgggacctgGagctggtgcagctggtgctt	16	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27935036	T	T	27935036	4	4	148	1	0	0	0	0	0	1	0	0	642	1175	41	3	293	3	ANKRD13B	17	27935036	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	628320	27935036	53260174	824	128213											
TBC1D29	26083	broad.mit.edu	37	chr17	28885908	28885908	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgggcactggtgcagctGctggccagtgagaggcactc	15	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28885908	T	T	28885908	1	4	148	0	1	0	0	0	0	0	0	0	15737	1334	46	3		3	TBC1D29	17	28885908	5'Flank	SNP	G	TCGA-49-6767-01A-11D-1855-08	950872	28885908	52309302	825	128214											
NF1	4763	broad.mit.edu	37	chr17	29654741	29654742	+	Frame_Shift_Ins	INS	-	T	T													ttcatatccggacccgctggINSgaactgtcacagcccgactc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29654742	T	T	29654741	7	5	148	1	0	1	1	0	0	0	0	0	10451	1241	43	0	5704	0	NF1	17	29654741	Frame_Shift_Ins	INS	-	TCGA-49-6767-01A-11D-1855-08	768833	29654741	51540469	826	128215											
NF1	4763	broad.mit.edu	37	chr17	29661882	29661882	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattgaaacacctttgtttgGaatacatgactccatggctg	8	8	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29661882	T	T	29661882	4	4	148	1	0	0	0	0	0	1	0	0	10451	1175	41	3	6058	3	NF1	17	29661882	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	7141	29661882	51533328	827	128216											
UTP6	55813	broad.mit.edu	37	chr17	30213073	30213073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttcttcagaataatcaGgattctcctaaagagtgtta	8	6	4	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30213073	T	T	30213073	3	4	148	1	0	0	0	0	1	0	0	0	17229	1000	35	2	1208	2	UTP6	17	30213073	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	551191	30213073	50982137	828	128217											
ACCN1	40	broad.mit.edu	37	chr17	31343092	31343092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggggttggtcaggccgGgaagagggtgcagaggcaga	22	5	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31343092	T	T	31343092	1	4	148	0	1	0	0	0	0	0	0	0	128	1247	43	2		2	ACCN1	17	31343092	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1130019	31343092	49852118	829	128218											
RAD51L3	5892	broad.mit.edu	37	chr17	33442286	33442286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcatccattcacacacCacttcaatgcctcatatttc	2	15	5	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33442286	A	A	33442286	1	1	148	0	1	0	0	0	0	0	0	0	13098	609	21	2		2	RAD51L3	17	33442286	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2099194	33442286	47752924	830	128219											
SLFN12L	342615	broad.mit.edu	37	chr17	33849347	33849347	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaatgtagagaattctgtGtgcctcacagtgaaacacat	8	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33849347	A	A	33849347	3	1	148	1	0	0	0	0	1	0	0	0	14849	1377	48	4	1817	4	SLFN12L	17	33849347	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	407061	33849347	47345863	831	128220											
AP2B1	163	broad.mit.edu	37	chr17	34044368	34044368	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaaaccccaattacacGgtaaggcctttctcagaatg	8	12	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34044368	T	T	34044368	2	4	148	1	0	0	0	0	0	0	0	1	743	1130	39	1		1	AP2B1	17	34044368	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	195021	34044368	47150842	832	128221											
CCL15	6359	broad.mit.edu	37	chr17	34328476	34328476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catttatgaactgggcctggGatccaaggacagcaacaagc	11	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34328476	T	T	34328476	3	4	148	1	0	0	0	0	1	0	0	0	2914	1174	41	3	301	3	CCL15	17	34328476	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	284108	34328476	46866734	833	128222											
RPL23	9349	broad.mit.edu	37	chr17	37009251	37009251	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgcttttaaaagggggagTatagcaacgtgcaaagacct	12	6	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37009251	C	C	37009251	1	2	148	0	1	0	0	0	0	0	0	0	13681	1653	57	5		5	RPL23	17	37009251	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	2680775	37009251	44185959	834	128223											
RPL19	6143	broad.mit.edu	37	chr17	37358530	37358530	+	Intron	DEL	G	-	-													ttggactctgtgatgtgcttGggccccagttgactgaccag							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37358530	-	-	37358530	6	5	148	0	1	1	0	1	0	0	0	0	13677	1363	47	0		0	RPL19	17	37358530	Intron	DEL	G	TCGA-49-6767-01A-11D-1855-08	349279	37358530	43836680	835	128224											
KRT12	3859	broad.mit.edu	37	chr17	39019653	39019653	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggaccgaaaagaggagGgtagccaacggctaatgtaa	16	6	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39019653	A	A	39019653	1	1	148	0	1	0	0	0	0	0	0	0	8520	1247	43	4		4	KRT12	17	39019653	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1661123	39019653	42175557	836	128225											
SLC4A1	6521	broad.mit.edu	37	chr17	42338833	42338833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcctctatctgctgcagGgtctcccccagcctgaagct	8	17	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42338833	T	T	42338833	1	4	148	0	1	0	0	0	0	0	0	0	14764	1247	43	2		2	SLC4A1	17	42338833	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3319180	42338833	38856377	837	128226											
CRHR1	1394	broad.mit.edu	37	chr17	43907388	43907388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctacacatctgggctgggGtgatggaggtggcctacccc	14	11	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43907388	T	T	43907388	1	4	148	0	1	0	0	0	0	0	0	0	3903	1276	44	3		3	CRHR1	17	43907388	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1568555	43907388	37287822	838	128227											
TBX21	30009	broad.mit.edu	37	chr17	45822368	45822368	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgccctctgcccctgggcCcaccatgtcctactaccgag	8	19	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45822368	A	A	45822368	3	1	148	1	0	0	0	0	1	0	0	0	15779	623	22	2	1266	2	TBX21	17	45822368	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1914980	45822368	35372842	839	128228											
HOXB4	3214	broad.mit.edu	37	chr17	46654118	46654118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctccattgggccggccaGggggccctccggctgagcct	16	16	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46654118	T	T	46654118	3	4	148	1	0	0	0	0	1	0	0	0	7370	1000	35	2	37	2	HOXB4	17	46654118	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	831750	46654118	34541092	840	128229											
B4GALNT2	124872	broad.mit.edu	37	chr17	47218867	47218867	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatcttccttgctcctccTcaagtaccatgccctactgt	4	17	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47218867	A	A	47218867	1	1	148	0	1	0	0	0	0	0	0	0	1272	1566	54	5		5	B4GALNT2	17	47218867	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	564749	47218867	33976343	841	128230											
FAM117A	81558	broad.mit.edu	37	chr17	47841458	47841458	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcccccgccatggctctccCggctgcctgcctcagcccca	10	22	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47841458	G	G	47841458	1	3	148	0	1	0	0	0	0	0	0	0	5455	667	23	4		4	FAM117A	17	47841458	5'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	622591	47841458	33353752	842	128231											
KIF2B	84643	broad.mit.edu	37	chr17	51900967	51900967	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacgaaatcatgcacatgatCgaagagtatcgcaggcacct	9	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51900967	A	A	51900967	2	1	148	1	0	0	0	0	0	0	0	1	8368	874	31	3		3	KIF2B	17	51900967	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	4059509	51900967	29294243	843	128232											
KIF2B	84643	broad.mit.edu	37	chr17	51901301	51901301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccacctgctttgcctatGggcagacgggaagtgggaag	16	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901301	T	T	51901301	3	4	148	1	0	0	0	0	1	0	0	0	8368	1348	47	2	909	2	KIF2B	17	51901301	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	334	51901301	29293909	844	128233											
STXBP4	252983	broad.mit.edu	37	chr17	53089389	53089389	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaggggtccgcggtagatCttagtcatggactgcatcag	13	10	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53089389	T	T	53089389	1	4	148	0	1	0	0	0	0	0	0	0	15473	928	32	4		4	STXBP4	17	53089389	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1188088	53089389	28105821	845	128234											
OR4D2	124538	broad.mit.edu	37	chr17	56247253	56247253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttcagtcactgctccCaaaatgctagtggacctcct	6	14	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247253	A	A	56247253	2	1	148	1	0	0	0	0	0	0	0	1	11150	581	21	2		2	OR4D2	17	56247253	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	3157864	56247253	24947957	846	128235											
TBX4	9496	broad.mit.edu	37	chr17	59560847	59560847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagtaccattcaggaatGgggactgtggagaactggac	13	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59560847	T	T	59560847	3	4	148	1	0	0	0	0	1	0	0	0	15782	1348	47	2	1638	2	TBX4	17	59560847	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3313594	59560847	21634363	847	128236											
EFCAB3	146779	broad.mit.edu	37	chr17	60484501	60484501	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagacatgcagaaattagaGatgctaagaataaaggagcc	10	5	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60484501	A	A	60484501	2	1	148	1	0	0	0	0	0	0	0	1	4975	933	33	4		4	EFCAB3	17	60484501	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	923654	60484501	20710709	848	128237											
SMARCD2	6603	broad.mit.edu	37	chr17	61914849	61914849	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcctggggcacaagcaggCgttttcggaatggatccatc	14	11	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61914849	T	T	61914849	3	4	148	1	0	0	0	0	1	0	0	0	14892	768	27	4	1290	4	SMARCD2	17	61914849	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1430348	61914849	19280361	849	128238											
RGS9	8787	broad.mit.edu	37	chr17	63200369	63200369	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggctgaagcacccccacCgctatgtgctggacgccgca	13	15	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63200369	G	G	63200369	3	3	148	1	0	0	0	0	1	0	0	0	13422	652	23	4	1211	4	RGS9	17	63200369	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1285520	63200369	17994841	850	128239											
KPNA2	3838	broad.mit.edu	37	chr17	66042116	66042116	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttttttcccttttaaaaAtaagtgtcatatctttgtta	3	7	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66042116	G	G	66042116	1	3	148	0	1	0	0	0	0	0	0	0	8501	116	4	5		5	KPNA2	17	66042116	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2841747	66042116	15153094	851	128240											
ABCA6	23460	broad.mit.edu	37	chr17	67113934	67113934	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgttatttatattctttttTcttttgcttatctacatatt	3	6	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67113934	C	C	67113934	1	2	148	0	1	0	0	0	0	0	0	0	36	1798	62	5		5	ABCA6	17	67113934	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1071818	67113934	14081276	852	128241											
ABCA10	10349	broad.mit.edu	37	chr17	67188650	67188650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaaggcttctacaaaatGtcaccctcatattaatatgc	4	10	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67188650	T	T	67188650	1	4	148	0	1	0	0	0	0	0	0	0	29	1392	48	3		3	ABCA10	17	67188650	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	74716	67188650	14006560	853	128242											
ABCA10	10349	broad.mit.edu	37	chr17	67212137	67212137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcatgaggaaagccaatGctatctgaaggaagaaagag	11	7	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67212137	T	T	67212137	3	4	148	1	0	0	0	0	1	0	0	0	29	1319	46	3	4082	3	ABCA10	17	67212137	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	23487	67212137	13983073	854	128243											
KCNJ2	3759	broad.mit.edu	37	chr17	68172471	68172471	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtcggagatatgactgactGattccttctctggaatagtt	10	7	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68172471	T	T	68172471	1	4	148	0	1	0	0	0	0	0	0	0	8121	1305	45	3		3	KCNJ2	17	68172471	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	960334	68172471	13022739	855	128244											
SDK2	54549	broad.mit.edu	37	chr17	71427815	71427815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagatgcgctcccctgaggGcaaaacagggtgggggtcag	16	10	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71427815	A	A	71427815	1	1	148	0	1	0	0	0	0	0	0	0	14082	1218	42	4		4	SDK2	17	71427815	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3255344	71427815	9767395	856	128245											
GPR142	350383	broad.mit.edu	37	chr17	72368430	72368430	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcacagccatcctcctGggcatcaccacactgttcac	7	16	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72368430	T	T	72368430	2	4	148	1	0	0	0	0	0	0	0	1	6715	1335	47	2		2	GPR142	17	72368430	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	940615	72368430	8826780	857	128246											
OTOP2	92736	broad.mit.edu	37	chr17	72926892	72926892	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatctcttactactccatcGtggctgtggtggcgggcaca	11	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72926892	C	C	72926892	3	2	148	1	0	0	0	0	1	0	0	0	11400	1145	40	4	1180	4	OTOP2	17	72926892	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	558462	72926892	8268318	858	128247											
SLC16A5	9121	broad.mit.edu	37	chr17	73094096	73094096	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctctcccgccacctcctCattcagctgctacctgctgg	6	20	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73094096	A	A	73094096	1	1	148	0	1	0	0	0	0	0	0	0	14524	841	29	3		3	SLC16A5	17	73094096	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	167204	73094096	8101114	859	128248											
KIAA0195	9772	broad.mit.edu	37	chr17	73488697	73488697	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactggcagctgcacctcaCctccctcaaacccctgggcc	7	20	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73488697	T	T	73488697	3	4	148	1	0	0	0	0	1	0	0	0	8230	507	18	4	1793	4	KIAA0195	17	73488697	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	394601	73488697	7706513	860	128249											
C17orf95	124512	broad.mit.edu	37	chr17	74729912	74729912	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagattttgatgtcacctaGacaacacttaaactcatatg	5	8	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74729912	C	C	74729912	1	2	148	0	1	0	0	0	0	0	0	0	1909	957	33	4		4	C17orf95	17	74729912	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	1241215	74729912	6465298	861	128250											
DNAH17	8632	broad.mit.edu	37	chr17	76430066	76430066	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggagggaaggagggaaaGagggagggatatgtccaagt	21	2	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76430066	A	A	76430066	1	1	148	0	1	0	0	0	0	0	0	0	4641	957	33	4		4	DNAH17	17	76430066	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1700154	76430066	4765144	862	128251											
CANT1	124583	broad.mit.edu	37	chr17	76993507	76993507	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgggtggggggcctgccGggggccgggcggtgggagca	25	8	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76993507	A	A	76993507	2	1	148	1	0	0	0	0	0	0	0	1	2643	1103	39	4		4	CANT1	17	76993507	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	563441	76993507	4201703	863	128252											
RFNG	5986	broad.mit.edu	37	chr17	80007766	80007766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctcagcctccgcctccCagcccgggcagctggacccc	11	20	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80007766	A	A	80007766	1	1	148	0	1	0	0	0	0	0	0	0	13360	609	21	2		2	RFNG	17	80007766	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	3014259	80007766	1187444	864	128253											
LPIN2	9663	broad.mit.edu	37	chr18	2931392	2931392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactgtggggactgggagcCagagagtgtgtcagactcgg	19	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2931392	A	A	2931392	3	1	148	1	0	0	0	0	1	0	0	0	9006	594	21	2	1420	2	LPIN2	18	2931392	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		2931392	75145856	865	128254											
LAMA1	284217	broad.mit.edu	37	chr18	6943237	6943237	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgaggtagactgggtgtgTggactttcagcgccaactgc	14	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6943237	C	C	6943237	2	2	148	1	0	0	0	0	0	0	0	1	8677	1683	59	5		5	LAMA1	18	6943237	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	4011845	6943237	71134011	866	128255											
RAB12	201475	broad.mit.edu	37	chr18	8633065	8633065	+	Intron	DEL	A	-	-													tcatcaggtcaaagggaaatAggggttactctcgttctttt							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8633065	-	-	8633065	6	5	148	0	1	1	0	1	0	0	0	0	13006	435	15	0		0	RAB12	18	8633065	Intron	DEL	A	TCGA-49-6767-01A-11D-1855-08	1689828	8633065	69444183	867	128256											
KIAA0802	23255	broad.mit.edu	37	chr18	8783547	8783547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgacagtgccgatttgaGgtgccagctccagtttgcca	13	10	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8783547	T	T	8783547	3	4	148	1	0	0	0	0	1	0	0	0	8264	1000	35	2	451	2	KIAA0802	18	8783547	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	150482	8783547	69293701	868	128257											
PTPN2	5771	broad.mit.edu	37	chr18	12814257	12814257	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctattatagccatgtatGagaatctcagttgatctggg	9	7	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12814257	A	A	12814257	3	1	148	1	0	0	0	0	1	0	0	0	12891	1294	45	4	482	4	PTPN2	18	12814257	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4030710	12814257	65262991	869	128258											
CDH2	1000	broad.mit.edu	37	chr18	25573585	25573585	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagcttgaattattaacGtatactgttgcactttctaa	6	7	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25573585	A	A	25573585	3	1	148	1	0	0	0	0	1	0	0	0	3135	1145	40	4	1719	4	CDH2	18	25573585	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	12759328	25573585	52503663	870	128259											
DSC3	1825	broad.mit.edu	37	chr18	28602364	28602364	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgggatgcacagaaaagaGcccaggtgaccttggtgtct	14	9	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28602364	C	C	28602364	3	2	148	1	0	0	0	0	1	0	0	0	4807	971	34	4	1881	4	DSC3	18	28602364	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3028779	28602364	49474884	871	128260											
ST8SIA5	29906	broad.mit.edu	37	chr18	44266155	44266155	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accggaagacgaagtcggcgCtgttgatctccctcccgcag	12	14	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44266155	G	G	44266155	3	3	148	1	0	0	0	0	1	0	0	0	15353	797	28	4	591	4	ST8SIA5	18	44266155	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	15663791	44266155	33811093	872	128261											
C18orf54	162681	broad.mit.edu	37	chr18	51887257	51887257	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctttgttttctttgtgttCagatgttttgaagcatttgg	9	4	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51887257	A	A	51887257	1	1	148	0	1	0	0	0	0	0	0	0	1922	841	29	3		3	C18orf54	18	51887257	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	7621102	51887257	26189991	873	128262											
WDR7	23335	broad.mit.edu	37	chr18	54398577	54398577	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaactattcaaaatgttgtaGtgttatgaaatatttgtgaa	7	2	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54398577	C	C	54398577	1	2	148	0	1	0	0	0	0	0	0	0	17447	1044	36	4		4	WDR7	18	54398577	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2511320	54398577	23678671	874	128263											
FECH	2235	broad.mit.edu	37	chr18	55233636	55233636	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccttggttatttttgcCagcaccgtatctacctttcc	6	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55233636	A	A	55233636	1	1	148	0	1	0	0	0	0	0	0	0	5865	609	21	2		2	FECH	18	55233636	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	835059	55233636	22843612	875	128264											
SERPINB13	5275	broad.mit.edu	37	chr18	61256071	61256071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccagttggaggaggttgGgcgcagtcagggggcttcct	17	9	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61256071	T	T	61256071	1	4	148	0	1	0	0	0	0	0	0	0	14213	1247	43	2		2	SERPINB13	18	61256071	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6022435	61256071	16821177	876	128265											
C18orf22	79863	broad.mit.edu	37	chr18	77804297	77804297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttcaggtgacgcatgtGgacatatgttttgattccct	10	7	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77804297	T	T	77804297	1	4	148	0	1	0	0	0	0	0	0	0	1916	1363	47	2		2	C18orf22	18	77804297	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	16548226	77804297	272951	877	128266											
RNF126	55658	broad.mit.edu	37	chr19	652940	652940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggcatcacctgcaaaccCccccaagtgtgaggacagag	11	15	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	652940	A	A	652940	1	1	148	0	1	0	0	0	0	0	0	0	13546	638	22	2		2	RNF126	19	652940	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08		652940	58476043	878	128267											
ATP8B3	148229	broad.mit.edu	37	chr19	1796656	1796656	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgcggggctggggacacTgccgtgccccgggggctgag	20	12	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1796656	G	G	1796656	1	3	148	0	1	0	0	0	0	0	0	0	1200	1595	55	5		5	ATP8B3	19	1796656	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1143716	1796656	57332327	879	128268											
DOT1L	84444	broad.mit.edu	37	chr19	2216346	2216346	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctcaagtcctgtgtgCcgcctgacgacgccctgtcc	11	16	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2216346	G	G	2216346	3	3	148	1	0	0	0	0	1	0	0	0	4749	739	26	4	2068	4	DOT1L	19	2216346	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	419690	2216346	56912637	880	128269											
TMPRSS9	360200	broad.mit.edu	37	chr19	2396584	2396584	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaccacacggccgagctgCggggaatccggtggaccagc	16	13	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2396584	T	T	2396584	3	4	148	1	0	0	0	0	1	0	0	0	16376	759	27	4	196	4	TMPRSS9	19	2396584	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	180238	2396584	56732399	881	128270											
PLIN4	729359	broad.mit.edu	37	chr19	4512005	4512005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgtcgcgatattttggGtcgttttcagcccagtttgc	10	10	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4512005	T	T	4512005	3	4	148	1	0	0	0	0	1	0	0	0	12187	1261	44	3	2164	3	PLIN4	19	4512005	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2115421	4512005	54616978	882	128271											
SAFB2	9667	broad.mit.edu	37	chr19	5587938	5587938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggcaccctgccaggcgCgtgcctggtgctcctctagc	12	17	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5587938	A	A	5587938	3	1	148	1	0	0	0	0	1	0	0	0	13918	768	27	3	294	3	SAFB2	19	5587938	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1075933	5587938	53541045	883	128272											
SAFB	6294	broad.mit.edu	37	chr19	5654318	5654318	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactggattcatgttgcagaGggtttttctcatctgggtat	11	6	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5654318	C	C	5654318	1	2	148	0	1	0	0	0	0	0	0	0	13917	1015	35	4		4	SAFB	19	5654318	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	66380	5654318	53474665	884	128273											
GTF2F1	2962	broad.mit.edu	37	chr19	6389580	6389580	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcggttgaactcactgccCgcgcccgattcgggcatctc	11	15	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6389580	A	A	6389580	2	1	148	1	0	0	0	0	0	0	0	1	6923	639	23	1		1	GTF2F1	19	6389580	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	735262	6389580	52739403	885	128274											
FBN3	84467	broad.mit.edu	37	chr19	8131064	8131064	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggccggccggagctccagGatgcgctcggcccggcccag	17	16	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8131064	A	A	8131064	2	1	148	1	0	0	0	0	0	0	0	1	5761	1164	41	4		4	FBN3	19	8131064	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1741484	8131064	50997919	886	128275											
ZNF266	10781	broad.mit.edu	37	chr19	9524200	9524200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaagctttgccacattcCatacacgtgaatggtttttt	6	8	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9524200	A	A	9524200	3	1	148	1	0	0	0	0	1	0	0	0	17931	594	21	2	252	2	ZNF266	19	9524200	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1393136	9524200	49604783	887	128276											
ZNF560	147741	broad.mit.edu	37	chr19	9578911	9578911	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattcagacgtgttgcctcTattttgagtactcatgttgg	9	8	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9578911	A	A	9578911	4	1	148	1	0	0	0	0	0	1	0	0	18118	1530	53	5	1664	5	ZNF560	19	9578911	Nonsense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	54711	9578911	49550072	888	128277											
ILF3	3609	broad.mit.edu	37	chr19	10788125	10788125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatcacatctcccgttgGctttgagtacttgggagttt	11	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10788125	T	T	10788125	1	4	148	0	1	0	0	0	0	0	0	0	7782	1218	42	3		3	ILF3	19	10788125	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1209214	10788125	48340858	889	128278											
SMARCA4	6597	broad.mit.edu	37	chr19	11105642	11105642	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagcagaagaaagagaacGagcggatcgagaaggagcgc	18	6	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11105642	T	T	11105642	4	4	148	1	0	0	0	0	0	1	0	0	14884	1059	37	3	1588	3	SMARCA4	19	11105642	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	317517	11105642	48023341	890	128279											
MYO9B	4650	broad.mit.edu	37	chr19	17296811	17296811	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgttccaatgctgaaaagGtgagtttctctaaggtgttt	10	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17296811	T	T	17296811	5	4	148	1	0	0	0	0	0	0	1	0	10179	1275	44	3	2644	3	MYO9B	19	17296811	Splice_Site	SNP	G	TCGA-49-6767-01A-11D-1855-08	6191169	17296811	41832172	891	128280											
UNC13A	23025	broad.mit.edu	37	chr19	17752261	17752261	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaactcgtccacaatctcCtgggctgtctcatcgtagta	8	13	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17752261	T	T	17752261	2	4	148	1	0	0	0	0	0	0	0	1	17110	680	24	4		4	UNC13A	19	17752261	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	455450	17752261	41376722	892	128281											
GATAD2A	54815	broad.mit.edu	37	chr19	19611940	19611940	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcagcaggcaggatgtcGgccgccactgtgctgtcccg	14	14	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19611940	A	A	19611940	2	1	148	1	0	0	0	0	0	0	0	1	6322	1103	39	4		4	GATAD2A	19	19611940	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1859679	19611940	39517043	893	128282											
C19orf2	8725	broad.mit.edu	37	chr19	30462166	30462166	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggttttattacacttctgAaatactgatggggtaaccta	8	6	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30462166	G	G	30462166	1	3	148	0	1	0	0	0	0	0	0	0	1930	261	9	5		5	C19orf2	19	30462166	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	10850226	30462166	28666817	894	128283											
TSHZ3	57616	broad.mit.edu	37	chr19	31769817	31769817	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtagtgttttgttttgatCatatggacactcaaatcctg	9	6	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31769817	A	A	31769817	3	1	148	1	0	0	0	0	1	0	0	0	16750	826	29	3	2367	3	TSHZ3	19	31769817	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1307651	31769817	27359166	895	128284											
RHPN2	85415	broad.mit.edu	37	chr19	33490547	33490547	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaagggtgtcagcccctcTggcatgtggtcgtagagctg	15	11	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33490547	A	A	33490547	2	1	148	1	0	0	0	0	0	0	0	1	13460	1567	55	5		5	RHPN2	19	33490547	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	1720730	33490547	25638436	896	128285											
WDR88	126248	broad.mit.edu	37	chr19	33642041	33642041	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgggagtcctccagcccagCaggtggaaggcgtggtctca	16	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33642041	G	G	33642041	1	3	148	0	1	0	0	0	0	0	0	0	17462	725	25	4		4	WDR88	19	33642041	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	151494	33642041	25486942	897	128286											
LSM14A	26065	broad.mit.edu	37	chr19	34718339	34718339	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatttctagctcttcatGgtcctgaacattgatttcag	8	8	4	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34718339	T	T	34718339	1	4	148	0	1	0	0	0	0	0	0	0	9141	1363	47	2		2	LSM14A	19	34718339	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	1076298	34718339	24410644	898	128287											
ZNF599	148103	broad.mit.edu	37	chr19	35258221	35258221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagactctcagtcaccaacCtgcgcaggtgctttgggaga	11	13	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35258221	A	A	35258221	3	1	148	1	0	0	0	0	1	0	0	0	18156	695	24	2	1533	2	ZNF599	19	35258221	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	539882	35258221	23870762	899	128288											
APLP1	333	broad.mit.edu	37	chr19	36362085	36362085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatatctggattctgaggagGgtggggttggtggctatagg	18	3	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36362085	T	T	36362085	1	4	148	0	1	0	0	0	0	0	0	0	780	1247	43	2		2	APLP1	19	36362085	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1103864	36362085	22766898	900	128289											
ZNF461	92283	broad.mit.edu	37	chr19	37130585	37130585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatttctgtgcattctttaCattcagaaagttctttagaa	5	7	4	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37130585	A	A	37130585	3	1	148	1	0	0	0	0	1	0	0	0	18052	478	17	3	1033	3	ZNF461	19	37130585	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	768500	37130585	21998398	901	128290											
RYR1	6261	broad.mit.edu	37	chr19	38959805	38959805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgagaccccttcacatGccctttcttgttttcctctg	8	14	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38959805	T	T	38959805	1	4	148	0	1	0	0	0	0	0	0	0	13879	1334	46	3		3	RYR1	19	38959805	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1829220	38959805	20169178	902	128291											
ATP5SL	55101	broad.mit.edu	37	chr19	41939238	41939238	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcaaccggccagcgagaGctcctgcaacgagtcggcca	15	14	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41939238	C	C	41939238	3	2	148	1	0	0	0	0	1	0	0	0	1168	971	34	4	246	4	ATP5SL	19	41939238	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2979433	41939238	17189745	903	128292											
GRIK5	2901	broad.mit.edu	37	chr19	42560809	42560811	+	Intron	TNP	CTC	ACA	ACA													tgtgactgggtatctgtgtgCtcaccgcagggcccaggtag							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACA	42560811	ACA	ACA	42560809	1	1	148	0	1	0	0	0	0	0	0	0	6843	812	28	3		3	GRIK5	19	42560809	Intron	TNP	CTC	TCGA-49-6767-01A-11D-1855-08	621571	42560809	16568174	904	128293											
POU2F2	5452	broad.mit.edu	37	chr19	42621606	42621606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaccaaagagagggcaCgtgtgtggcaatggcaatca	14	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42621606	A	A	42621606	1	1	148	0	1	0	0	0	0	0	0	0	12368	551	19	3		3	POU2F2	19	42621606	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	60797	42621606	16507377	905	128294											
TMEM145	284339	broad.mit.edu	37	chr19	42827820	42827820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagccggagtccctggacCcggagggagccaatccgctg	14	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42827820	A	A	42827820	3	1	148	1	0	0	0	0	1	0	0	0	16182	623	22	2	1334	2	TMEM145	19	42827820	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	206214	42827820	16301163	906	128295											
PSG6	5675	broad.mit.edu	37	chr19	43420611	43420611	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attattacttgggcagtggtGggcaggttccagaagtttaa	13	5	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43420611	A	A	43420611	2	1	148	1	0	0	0	0	0	0	0	1	12765	1335	47	4		4	PSG6	19	43420611	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	592791	43420611	15708372	907	128296											
ZNF235	9310	broad.mit.edu	37	chr19	44792248	44792248	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggactctctgatgggtaTgaagatttgagctacaacta	11	6	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44792248	C	C	44792248	3	2	148	1	0	0	0	0	1	0	0	0	17914	1464	51	5	880	5	ZNF235	19	44792248	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1371637	44792248	14336735	908	128297											
SFRS16	11129	broad.mit.edu	37	chr19	45565286	45565286	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaggggaggcccccaacctGgtcagcagccccctcactgt	11	16	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45565286	C	C	45565286	1	2	148	0	1	0	0	0	0	0	0	0	14285	1363	47	4		4	SFRS16	19	45565286	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	773038	45565286	13563697	909	128298											
GPR4	2828	broad.mit.edu	37	chr19	46094361	46094361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgaagccgcagtcccagGggcggcccaggtagatggcg	16	14	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46094361	T	T	46094361	3	4	148	1	0	0	0	0	1	0	0	0	6759	1232	43	2	328	2	GPR4	19	46094361	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	529075	46094361	13034622	910	128299											
CCDC61	729440	broad.mit.edu	37	chr19	46509878	46509878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagtccctgcggaaccGcaagatggggggccgcccag	16	14	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46509878	T	T	46509878	3	4	148	1	0	0	0	0	1	0	0	0	2860	1087	38	3	482	3	CCDC61	19	46509878	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	415517	46509878	12619105	911	128300											
IGFL2	147920	broad.mit.edu	37	chr19	46664363	46664363	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagaagacatagaaagaaaAtcaactttcactaaggcatc	7	7	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46664363	G	G	46664363	1	3	148	0	1	0	0	0	0	0	0	0	7657	116	4	5		5	IGFL2	19	46664363	3'UTR	SNP	A	TCGA-49-6767-01A-11D-1855-08	154485	46664363	12464620	912	128301											
ZC3H4	23211	broad.mit.edu	37	chr19	47587514	47587514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagtcactcccacccaccCtcaccacggctccagaacct	4	22	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47587514	T	T	47587514	1	4	148	0	1	0	0	0	0	0	0	0	17696	696	24	4		4	ZC3H4	19	47587514	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	923151	47587514	11541469	913	128302											
MEIS3	56917	broad.mit.edu	37	chr19	47912735	47912735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctgggaggccaggccccCactggatggacctggggtcc	15	14	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47912735	T	T	47912735	3	4	148	1	0	0	0	0	1	0	0	0	9562	594	21	4	622	4	MEIS3	19	47912735	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	325221	47912735	11216248	914	128303											
EHD2	30846	broad.mit.edu	37	chr19	48239761	48239761	+	Frame_Shift_Del	DEL	G	-	-													tggaacatcacatctcccctGgggactttcctgattgccag							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48239761	-	-	48239761	7	5	148	1	0	1	0	1	0	0	0	0	5018	1348	47	0	1065	0	EHD2	19	48239761	Frame_Shift_Del	DEL	G	TCGA-49-6767-01A-11D-1855-08	327026	48239761	10889222	915	128304											
SULT2A1	6822	broad.mit.edu	37	chr19	48382479	48382479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccccaccggcttgttaaCgtatgattgacaaataaaac	6	12	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48382479	A	A	48382479	1	1	148	0	1	0	0	0	0	0	0	0	15499	551	19	3		3	SULT2A1	19	48382479	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	142718	48382479	10746504	916	128305											
ELSPBP1	64100	broad.mit.edu	37	chr19	48519179	48519179	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtatcttccctttcatcTatcgaggaaaggcttataac	7	10	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48519179	A	A	48519179	3	1	148	1	0	0	0	0	1	0	0	0	5125	1522	53	5	248	5	ELSPBP1	19	48519179	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	136700	48519179	10609804	917	128306											
PRMT1	3276	broad.mit.edu	37	chr19	50189881	50189881	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccgagtccccgtacacGcactggaagcagacggtgtt	13	14	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50189881	T	T	50189881	2	4	148	1	0	0	0	0	0	0	0	1	12641	1074	38	3		3	PRMT1	19	50189881	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1670702	50189881	8939102	918	128307											
KLK3	354	broad.mit.edu	37	chr19	51363278	51363278	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgcttcaaggtatcacGtcatggggcagtgaaccatg	14	8	3	1	rs61736309	byFrequency;by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51363278	A	A	51363278	1	1	148	0	1	0	0	0	0	0	0	0	8476	1132	40	4		4	KLK3	19	51363278	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	1173397	51363278	7765705	919	128308											
SIGLEC6	946	broad.mit.edu	37	chr19	52033265	52033265	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaggtgtagagagttagaGatggggtataggggcaaagc	19	2	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52033265	T	T	52033265	1	4	148	0	1	0	0	0	0	0	0	0	14425	957	33	3		3	SIGLEC6	19	52033265	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	669987	52033265	7095718	920	128309											
ZNF616	90317	broad.mit.edu	37	chr19	52619984	52619984	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagttcagccagacgtgactCaaagtttgatgtaagctggt	11	8	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52619984	A	A	52619984	4	1	148	1	0	0	0	0	0	1	0	0	18168	835	29	3	1916	3	ZNF616	19	52619984	Nonsense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	586719	52619984	6508999	921	128310											
ZNF813	126017	broad.mit.edu	37	chr19	53989742	53989742	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacacagctgggaagacaaAatgtggtgaagaacccctta	10	8	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53989742	C	C	53989742	1	2	148	0	1	0	0	0	0	0	0	0	18304	29	1	5		5	ZNF813	19	53989742	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1369758	53989742	5139241	922	128311											
LILRB2	10288	broad.mit.edu	37	chr19	54780518	54780518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttgtagatgggactgaCgttaagtgctttctccattc	9	7	1	2	rs139172802	by1000genomes	TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54780518	A	A	54780518	1	1	148	0	1	0	0	0	0	0	0	0	8863	551	19	3		3	LILRB2	19	54780518	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	790776	54780518	4348465	923	128312											
LILRB2	10288	broad.mit.edu	37	chr19	54780746	54780746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagtaggacgacggccacCaagatgccgatcacaacccc	10	15	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54780746	A	A	54780746	3	1	148	1	0	0	0	0	1	0	0	0	8863	593	21	2	418	2	LILRB2	19	54780746	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	228	54780746	4348237	924	128313											
KIR2DL3	3804	broad.mit.edu	37	chr19	55255110	55255110	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaaatagacatgaagagaGatggggtggagggtgagaga	19	1	0	6			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55255110	A	A	55255110	1	1	148	0	1	0	0	0	0	0	0	0	8388	957	33	4		4	KIR2DL3	19	55255110	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	474364	55255110	3873873	925	128314											
PTPRH	5794	broad.mit.edu	37	chr19	55708895	55708895	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccattattgatggctccaGtggctaaggaggctgaacca	11	9	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55708895	T	T	55708895	1	4	148	0	1	0	0	0	0	0	0	0	12911	1044	36	3		3	PTPRH	19	55708895	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	453785	55708895	3420088	926	128315											
USP29	57663	broad.mit.edu	37	chr19	57640280	57640280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttaactttgaaaaacaaCgtgttcttgtttattgacaa	6	6	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57640280	A	A	57640280	3	1	148	1	0	0	0	0	1	0	0	0	17186	535	19	3	239	3	USP29	19	57640280	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1931385	57640280	1488703	927	128316											
ZSCAN1	284312	broad.mit.edu	37	chr19	58564794	58564794	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatctccctcgccctccaCagggtcccgggcccgcttgc	9	22	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58564794	A	A	58564794	1	1	148	0	1	0	0	0	0	0	0	0	18355	493	17	3		3	ZSCAN1	19	58564794	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	924514	58564794	564189	928	128317											
SIRPA	140885	broad.mit.edu	37	chr20	1905548	1905548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcattcccctcttcctccCtaagggtttgtccctggact	8	15	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1905548	A	A	1905548	1	1	148	0	1	0	0	0	0	0	0	0	14445	696	24	2		2	SIRPA	20	1905548	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08		1905548	61119972	929	128318											
PTPRA	5786	broad.mit.edu	37	chr20	3001866	3001866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgggggactttaatctGggctttgtgggctcttcctt	12	9	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3001866	T	T	3001866	1	4	148	0	1	0	0	0	0	0	0	0	12903	1363	47	2		2	PTPRA	20	3001866	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1096318	3001866	60023654	930	128319											
SNAP25	6616	broad.mit.edu	37	chr20	10280043	10280043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atacacagaatcgccagatcGacaggatcatggagaaggtg	12	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10280043	T	T	10280043	3	4	148	1	0	0	0	0	1	0	0	0	14944	1058	37	3	679	3	SNAP25	20	10280043	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	7278177	10280043	52745477	931	128320											
ZNF133	7692	broad.mit.edu	37	chr20	18286371	18286371	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggatttcacccaggatgAgtggaggctgctgagccctg	15	9	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18286371	T	T	18286371	3	4	148	1	0	0	0	0	1	0	0	0	17849	304	11	5	43	5	ZNF133	20	18286371	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	8006328	18286371	44739149	932	128321											
CRNKL1	51340	broad.mit.edu	37	chr20	20022308	20022308	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttcacaaaatattgaagtCtgctgctaacactcatttta	4	8	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20022308	T	T	20022308	1	4	148	0	1	0	0	0	0	0	0	0	3923	928	32	4		4	CRNKL1	20	20022308	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1735937	20022308	43003212	933	128322											
CD93	22918	broad.mit.edu	37	chr20	23066072	23066072	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctgacacagagggggcccGagctgccccagtcgaacaca	14	14	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23066072	A	A	23066072	3	1	148	1	0	0	0	0	1	0	0	0	3077	1059	37	4	1208	4	CD93	20	23066072	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3043764	23066072	39959448	934	128323											
NINL	22981	broad.mit.edu	37	chr20	25462855	25462855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgtgaggtgagggccTgttgcttcccagcttccagc	13	12	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25462855	A	A	25462855	1	1	148	0	1	0	0	0	0	0	0	0	10515	1595	55	5		5	NINL	20	25462855	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	2396783	25462855	37562665	935	128324											
REM1	28954	broad.mit.edu	37	chr20	30064325	30064326	+	Missense_Mutation	DNP	GG	TT	TT													cccactgcccctgtccccacGgggccaccagcctggccgcc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30064326	TT	TT	30064325	3	4	148	1	0	0	0	0	1	0	0	0	13330	1116	39	1	79	1	REM1	20	30064325	Missense_Mutation	DNP	GG	TCGA-49-6767-01A-11D-1855-08	4601470	30064325	32961195	936	128325											
DUSP15	128853	broad.mit.edu	37	chr20	30436290	30436290	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgccatcggggttgccagGggttgaggacccatctgggc	17	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30436290	C	C	30436290	3	2	148	1	0	0	0	0	1	0	0	0	4855	1247	43	4		4	DUSP15	20	30436290	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	371965	30436290	32589230	937	128326											
TM9SF4	9777	broad.mit.edu	37	chr20	30730905	30730905	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccccagagcatcaggctgGagggtgagtggggaggtgtg	19	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30730905	T	T	30730905	4	4	148	1	0	0	0	0	0	1	0	0	16103	1175	41	3	671	3	TM9SF4	20	30730905	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	294615	30730905	32294615	938	128327											
BPIL1	80341	broad.mit.edu	37	chr20	31606702	31606702	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcctagggagacctcccaGaggccaaatcatgggtgggt	14	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31606702	T	T	31606702	1	4	148	0	1	0	0	0	0	0	0	0	1500	957	33	3		3	BPIL1	20	31606702	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	875797	31606702	31418818	939	128328											
BPIL3	128859	broad.mit.edu	37	chr20	31627074	31627074	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaacgtagaaatcacctaTgtcttgagggaccccttatt	7	11	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31627074	C	C	31627074	1	2	148	0	1	0	0	0	0	0	0	0	1502	1479	51	5		5	BPIL3	20	31627074	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	20372	31627074	31398446	940	128329											
BPIL3	128859	broad.mit.edu	37	chr20	31631305	31631305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatcaatataatcctgcCcctcagaatctagaacactc	5	14	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31631305	A	A	31631305	1	1	148	0	1	0	0	0	0	0	0	0	1502	638	22	2		2	BPIL3	20	31631305	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4231	31631305	31394215	941	128330											
C20orf71	128861	broad.mit.edu	37	chr20	31811579	31811579	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagccccccaccttttccgtGacactgtgcaaagtcagtgg	9	14	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31811579	T	T	31811579	1	4	148	0	1	0	0	0	0	0	0	0	2139	1305	45	3		3	C20orf71	20	31811579	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	180274	31811579	31213941	942	128331											
PXMP4	11264	broad.mit.edu	37	chr20	32307884	32307884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcagccccagcccggcCcgacggccccactcacacag	8	23	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32307884	A	A	32307884	1	1	148	0	1	0	0	0	0	0	0	0	12959	638	22	2		2	PXMP4	20	32307884	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	496305	32307884	30717636	943	128332											
C20orf132	140699	broad.mit.edu	37	chr20	35766357	35766357	+	Frame_Shift_Del	DEL	C	-	-													ataactgggcacagataactCccataatttctggcacctga							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35766357	-	-	35766357	7	5	148	1	0	1	0	1	0	0	0	0	2108	855	30	0	1683	0	C20orf132	20	35766357	Frame_Shift_Del	DEL	C	TCGA-49-6767-01A-11D-1855-08	3458473	35766357	27259163	944	128333											
RPN2	6185	broad.mit.edu	37	chr20	35860908	35860908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagctccagaggggtccaGcagctgtgacctgaattgat	12	9	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35860908	T	T	35860908	1	4	148	0	1	0	0	0	0	0	0	0	13719	986	34	3		3	RPN2	20	35860908	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	94551	35860908	27164612	945	128334											
TOP1	7150	broad.mit.edu	37	chr20	39658162	39658162	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcccccgcgccctgccGgtgccgggcagaggacagac	14	19	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39658162	C	C	39658162	1	2	148	0	1	0	0	0	0	0	0	0	16487	1131	39	4		4	TOP1	20	39658162	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3797254	39658162	23367358	946	128335											
PLCG1	5335	broad.mit.edu	37	chr20	39792419	39792419	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagctggatgcagtatgccCggacaccatgaacaaccctc	10	14	0	1	rs150381500		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39792419	G	G	39792419	3	3	148	1	0	0	0	0	1	0	0	0	12130	652	23	4	994	4	PLCG1	20	39792419	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	134257	39792419	23233101	947	128336											
PTPRT	11122	broad.mit.edu	37	chr20	40748600	40748600	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgcaatgtagtgccgaggTcgatggtatccctggataac	13	9	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40748600	A	A	40748600	2	1	148	1	0	0	0	0	0	0	0	1	12920	1654	58	5		5	PTPRT	20	40748600	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	956181	40748600	22276920	948	128337											
MMP9	4318	broad.mit.edu	37	chr20	44639949	44639949	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accggtttggcttctgccccAgcgagagtgagtgagggggc	17	10	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44639949	T	T	44639949	3	4	148	1	0	0	0	0	1	0	0	0	9763	188	7	5	835	5	MMP9	20	44639949	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	3891349	44639949	18385571	949	128338											
SLC2A10	81031	broad.mit.edu	37	chr20	45354645	45354645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagctttgccgtgcccatgGactcaggcccaagctgtctg	11	14	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45354645	T	T	45354645	3	4	148	1	0	0	0	0	1	0	0	0	14653	1174	41	3	976	3	SLC2A10	20	45354645	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	714696	45354645	17670875	950	128339											
ZNFX1	57169	broad.mit.edu	37	chr20	47881208	47881208	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagccactgctatcttgtttAggtccctcttgaactacccc	6	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47881208	T	T	47881208	1	4	148	0	1	0	0	0	0	0	0	0	18334	435	15	5		5	ZNFX1	20	47881208	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2526563	47881208	15144312	951	128340											
ZNFX1	57169	broad.mit.edu	37	chr20	47886771	47886771	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaagggaacatcttcctcCtggacctcctggagtccttc	10	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47886771	T	T	47886771	2	4	148	1	0	0	0	0	0	0	0	1	18334	680	24	4		4	ZNFX1	20	47886771	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	5563	47886771	15138749	952	128341											
SNAI1	6615	broad.mit.edu	37	chr20	48600833	48600833	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcgtctgcggaacctgCgggaaggccttctctaggcc	13	15	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48600833	A	A	48600833	4	1	148	1	0	0	0	0	0	1	0	0	14940	776	27	3	561	3	SNAI1	20	48600833	Nonsense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	714062	48600833	14424687	953	128342											
SALL4	57167	broad.mit.edu	37	chr20	50408856	50408856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcttcatcctcactcgCcacctcgtcattccctgggt	8	16	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50408856	A	A	50408856	3	1	148	1	0	0	0	0	1	0	0	0	13924	739	26	3	3007	3	SALL4	20	50408856	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1808023	50408856	12616664	954	128343											
TSHZ2	128553	broad.mit.edu	37	chr20	52037993	52037993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcattctgaaacatgcaGgtcctggcatcttgctggac	9	11	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52037993	T	T	52037993	1	4	148	0	1	0	0	0	0	0	0	0	16749	1015	35	2		2	TSHZ2	20	52037993	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1629137	52037993	10987527	955	128344											
MC3R	4159	broad.mit.edu	37	chr20	54824480	54824480	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcattgtgtgcctcatcaCcatgttcttcgccatgatgc	9	12	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54824480	T	T	54824480	3	4	148	1	0	0	0	0	1	0	0	0	9458	507	18	4	583	4	MC3R	20	54824480	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2786487	54824480	8201040	956	128345											
MC3R	4159	broad.mit.edu	37	chr20	54824808	54824808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctacgctttccggagCctggaattgcgcaacacctt	8	14	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54824808	A	A	54824808	3	1	148	1	0	0	0	0	1	0	0	0	9458	738	26	3	911	3	MC3R	20	54824808	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	328	54824808	8200712	957	128346											
BMP7	655	broad.mit.edu	37	chr20	55758937	55758937	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttctggggcccgtgccGcccaatcaggcccgccaact	11	17	2	0	rs148287752		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55758937	T	T	55758937	2	4	148	1	0	0	0	0	0	0	0	1	1471	1086	38	3		3	BMP7	20	55758937	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	934129	55758937	7266583	958	128347											
PCK1	5105	broad.mit.edu	37	chr20	56138392	56138392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggttcccggacagatcGggaaaccccaccagtaatga	11	12	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138392	T	T	56138392	1	4	148	0	1	0	0	0	0	0	0	0	11675	1131	39	1		1	PCK1	20	56138392	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	379455	56138392	6887128	959	128348											
NPEPL1	79716	broad.mit.edu	37	chr20	57287652	57287652	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtacgtctggccctccCactccttcctgcccactgtt	8	17	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57287652	T	T	57287652	1	4	148	0	1	0	0	0	0	0	0	0	10669	609	21	4		4	NPEPL1	20	57287652	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1149260	57287652	5737868	960	128349											
ZNF831	128611	broad.mit.edu	37	chr20	57829644	57829644	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcactcggaaagattctgTggttccttctaagccagagc	9	10	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57829644	C	C	57829644	3	2	148	1	0	0	0	0	1	0	0	0	18314	1696	59	5	4898	5	ZNF831	20	57829644	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	541992	57829644	5195876	961	128350											
OGFR	11054	broad.mit.edu	37	chr20	61444332	61444332	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccagggtggccgacaaggtGaggaagcggaggaaggtgga	21	6	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61444332	T	T	61444332	2	4	148	1	0	0	0	0	0	0	0	1	10938	1277	45	3		3	OGFR	20	61444332	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	3614688	61444332	1581188	962	128351											
BIRC7	79444	broad.mit.edu	37	chr20	61870669	61870669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggcccatagagggtggGggccagggtgtggggacatt	19	8	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61870669	T	T	61870669	1	4	148	0	1	0	0	0	0	0	0	0	1445	1247	43	2		2	BIRC7	20	61870669	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	426337	61870669	1154851	963	128352											
CHRNA4	1137	broad.mit.edu	37	chr20	61980992	61980992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgcccaacacagccatGggcgggacttaccgagaagt	14	12	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61980992	T	T	61980992	1	4	148	0	1	0	0	0	0	0	0	0	3416	1363	47	2		2	CHRNA4	20	61980992	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	110323	61980992	1044528	964	128353											
CHRNA4	1137	broad.mit.edu	37	chr20	61981902	61981902	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcggtgatgagcagcaggaaGacggtgagcgacagcagcac	16	9	0	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61981902	C	C	61981902	2	2	148	1	0	0	0	0	0	0	0	1	3416	929	33	4		4	CHRNA4	20	61981902	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	910	61981902	1043618	965	128354											
CHRNA4	1137	broad.mit.edu	37	chr20	61982063	61982063	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggatgacgaaggcataggTgatgtccgggtagatctcgg	16	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61982063	C	C	61982063	3	2	148	1	0	0	0	0	1	0	0	0	3416	1696	59	5	1191	5	CHRNA4	20	61982063	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	161	61982063	1043457	966	128355											
TPTE	7179	broad.mit.edu	37	chr21	10910328	10910328	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatagaaaaactgcactttCacatcatcatacagaggtag	7	8	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10910328	G	G	10910328	2	3	148	1	0	0	0	0	0	0	0	1	16554	813	29	4		4	TPTE	21	10910328	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08		10910328	37219567	967	128356											
TPTE	7179	broad.mit.edu	37	chr21	10969173	10969173	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagcactttgggaggcCgaggcgggtggatcatgagg	18	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10969173	G	G	10969173	1	3	148	0	1	0	0	0	0	0	0	0	16554	667	23	4		4	TPTE	21	10969173	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	58845	10969173	37160722	968	128357											
BAGE2	85319	broad.mit.edu	37	chr21	11029543	11029543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaattcttaacatccagtaGggcaaaacaaatcagacaga	6	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11029543	T	T	11029543	1	4	148	0	1	0	0	0	0	0	0	0	1297	1015	35	2		2	BAGE2	21	11029543	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	60370	11029543	37100352	969	128358											
BAGE2	85319	broad.mit.edu	37	chr21	11047544	11047544	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagacaaaaagtatgataCcctttgtcacacgtatcaca	6	9	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11047544	A	A	11047544	1	1	148	0	1	0	0	0	0	0	0	0	1297	522	18	3		3	BAGE2	21	11047544	3'UTR	SNP	C	TCGA-49-6767-01A-11D-1855-08	18001	11047544	37082351	970	128359											
USP16	10600	broad.mit.edu	37	chr21	30415949	30415949	+	Intron	DEL	T	-	-													ttaggaggaaaatcatatgcTtgtaattttatattttgagc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30415949	-	-	30415949	6	5	148	0	1	1	0	1	0	0	0	0	17173	1624	56	0		0	USP16	21	30415949	Intron	DEL	T	TCGA-49-6767-01A-11D-1855-08	19368405	30415949	17713946	971	128360											
KRTAP19-2	337969	broad.mit.edu	37	chr21	31859528	31859528	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttagtagaagccagtgaatCtatatcttctgtagcatgat	8	7	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31859528	A	A	31859528	3	1	148	1	0	0	0	0	1	0	0	0	8600	913	32	3	20	3	KRTAP19-2	21	31859528	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1443579	31859528	16270367	972	128361											
KRTAP19-3	337970	broad.mit.edu	37	chr21	31864067	31864067	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccatatcctccatagtatGatgggcggtagcagccatat	9	10	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31864067	A	A	31864067	3	1	148	1	0	0	0	0	1	0	0	0	8601	1294	45	4	40	4	KRTAP19-3	21	31864067	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	4539	31864067	16265828	973	128362											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253560	32253560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtaggtagttgagcagGggttggaaatacaggtagtt	17	3	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32253560	T	T	32253560	3	4	148	1	0	0	0	0	1	0	0	0	8588	1232	43	2	211	2	KRTAP11-1	21	32253560	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	389493	32253560	15876335	974	128363											
ITSN1	6453	broad.mit.edu	37	chr21	35107550	35107550	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgtattttcttgtatAttttaaaaataaatgttttc	4	3	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35107550	G	G	35107550	1	3	148	0	1	0	0	0	0	0	0	0	7996	464	16	5		5	ITSN1	21	35107550	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	2853990	35107550	13022345	975	128364											
UBASH3A	53347	broad.mit.edu	37	chr21	43829506	43829506	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttgttgtgacagtgggtGatgccggcttgctctctgtt	13	7	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43829506	A	A	43829506	1	1	148	0	1	0	0	0	0	0	0	0	16965	1305	45	4		4	UBASH3A	21	43829506	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	8721956	43829506	4300389	976	128365											
PCNT	5116	broad.mit.edu	37	chr21	47783764	47783764	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attgcagccagtgtgggcggGagccgcccacagcccaggac	15	14	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47783764	T	T	47783764	4	4	148	1	0	0	0	0	0	1	0	0	11684	1175	41	3	2578	3	PCNT	21	47783764	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	3954258	47783764	346131	977	128366											
GAB4	128954	broad.mit.edu	37	chr22	17447089	17447089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctctgtgagtggggagcCaagcaggtcaaagcgaacaa	14	8	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17447089	A	A	17447089	3	1	148	1	0	0	0	0	1	0	0	0	6211	594	21	2	555	2	GAB4	22	17447089	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		17447089	33857477	978	128367											
CLTCL1	8218	broad.mit.edu	37	chr22	19226984	19226984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctagtcaaggcacagagGcaagtggagcctcagctcca	13	11	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19226984	A	A	19226984	1	1	148	0	1	0	0	0	0	0	0	0	3599	1218	42	4		4	CLTCL1	22	19226984	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1779895	19226984	32077582	979	128368											
CDC45	8318	broad.mit.edu	37	chr22	19471345	19471345	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattgtatagttttccgtaGaaagaggagaggcttaattc	10	4	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19471345	C	C	19471345	1	2	148	0	1	0	0	0	0	0	0	0	3111	957	33	4		4	CDC45	22	19471345	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	244361	19471345	31833221	980	128369											
SCARF2	91179	broad.mit.edu	37	chr22	20781790	20781790	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctccagccctgagggtgGctccaggaagctgcagttga	14	12	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20781790	A	A	20781790	3	1	148	1	0	0	0	0	1	0	0	0	13996	1203	42	4	1017	4	SCARF2	22	20781790	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1310445	20781790	30522776	981	128370											
GNAZ	2781	broad.mit.edu	37	chr22	23438319	23438319	+	Frame_Shift_Del	DEL	A	-	-													ctgcttcagccgctccagcgAgtaccacctggaggacaacg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23438319	-	-	23438319	7	5	148	1	0	1	0	1	0	0	0	0	6578	304	11	0	439	0	GNAZ	22	23438319	Frame_Shift_Del	DEL	A	TCGA-49-6767-01A-11D-1855-08	2656529	23438319	27866247	982	128371											
PIWIL3	440822	broad.mit.edu	37	chr22	25115791	25115791	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcaagccaatcgtgtcaTagatgacgttataatgagtg	11	7	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25115791	C	C	25115791	3	2	148	1	0	0	0	0	1	0	0	0	12054	1406	49	5	200	5	PIWIL3	22	25115791	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1677472	25115791	26188775	983	128372											
AP1B1	162	broad.mit.edu	37	chr22	29725805	29725805	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacgccacagccccccacCgaccagcactgccagcagga	9	21	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29725805	A	A	29725805	1	1	148	0	1	0	0	0	0	0	0	0	733	667	23	1		1	AP1B1	22	29725805	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	4610014	29725805	21578761	984	128373											
AP1B1	162	broad.mit.edu	37	chr22	29745310	29745311	+	Frame_Shift_Ins	INS	-	G	G													aatccagatcatggcagcccINSgggcctcaggctcatccagg							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29745311	G	G	29745310	7	5	148	1	0	1	1	0	0	0	0	0	733	652	23	0	1567	0	AP1B1	22	29745310	Frame_Shift_Ins	INS	-	TCGA-49-6767-01A-11D-1855-08	19505	29745310	21559256	985	128374											
MYH9	4627	broad.mit.edu	37	chr22	36708026	36708026	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagctgcccggctcctggtCctagagagcctcgactccac	11	17	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36708026	A	A	36708026	1	1	148	0	1	0	0	0	0	0	0	0	10136	870	30	3		3	MYH9	22	36708026	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	6962716	36708026	14596540	986	128375											
MFNG	4242	broad.mit.edu	37	chr22	37875600	37875600	+	Intron	DEL	C	-	-													caagccagggtccccaagcaCccccacagtcggtcaacagt							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37875600	-	-	37875600	6	5	148	0	1	1	0	1	0	0	0	0	9618	522	18	0		0	MFNG	22	37875600	Intron	DEL	C	TCGA-49-6767-01A-11D-1855-08	1167574	37875600	13428966	987	128376											
TTLL12	23170	broad.mit.edu	37	chr22	43569686	43569686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcactgtccagccagggcCctgagccctggggctcctgg	13	16	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43569686	A	A	43569686	1	1	148	0	1	0	0	0	0	0	0	0	16851	638	22	2		2	TTLL12	22	43569686	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	5694086	43569686	7734880	988	128377											
PARVB	29780	broad.mit.edu	37	chr22	44515036	44515036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggtgagttcacagcagGgacagctctgtcccaccccc	11	15	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44515036	T	T	44515036	1	4	148	0	1	0	0	0	0	0	0	0	11563	1247	43	2		2	PARVB	22	44515036	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	945350	44515036	6789530	989	128378											
BRD1	23774	broad.mit.edu	37	chr22	50217165	50217165	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcacacagtcggcgggCcgggcccgcgactgcaggca	15	16	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50217165	A	A	50217165	2	1	148	1	0	0	0	0	0	0	0	1	1510	726	26	3		3	BRD1	22	50217165	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	5702129	50217165	1087401	990	128379											
PLXNB2	23654	broad.mit.edu	37	chr22	50724601	50724601	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatgggcacaagacactcaCggcaggttctcctccaggct	11	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50724601	T	T	50724601	5	4	148	1	0	0	0	0	0	0	1	0	12219	550	19	4	3754	4	PLXNB2	22	50724601	Splice_Site	SNP	C	TCGA-49-6767-01A-11D-1855-08	507436	50724601	579965	991	128380											
MXRA5	25878	broad.mit.edu	37	chrX	3228872	3228872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagtttccgactgccccCggctgctatctcccgcacag	8	17	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3228872	A	A	3228872	3	1	148	1	0	0	0	0	1	0	0	0	10097	652	23	1	1118	1	MXRA5	23	3228872	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08		3228872	152041688	992	128381											
NLGN4X	57502	broad.mit.edu	37	chrX	5811275	5811275	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgacgccccgacggcaatGgtgacacttaattcggtgga	13	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5811275	T	T	5811275	2	4	148	1	0	0	0	0	0	0	0	1	10559	1335	47	2		2	NLGN4X	23	5811275	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	2582403	5811275	149459285	993	128382											
ARHGAP6	395	broad.mit.edu	37	chrX	11204553	11204553	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccactgacatggcacccTgcaagtgacacagagccgtg	10	13	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11204553	C	C	11204553	5	2	148	1	0	0	0	0	0	0	1	0	889	1594	55	5	2006	5	ARHGAP6	23	11204553	Splice_Site	SNP	T	TCGA-49-6767-01A-11D-1855-08	5393278	11204553	144066007	994	128383											
ARHGAP6	395	broad.mit.edu	37	chrX	11243974	11243974	+	Intron	DEL	T	-	-													tctgaatgtatggaaagaccTttttttttgatcagtttgac							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11243974	-	-	11243974	6	5	148	0	1	1	0	1	0	0	0	0	889	1624	56	0		0	ARHGAP6	23	11243974	Intron	DEL	T	TCGA-49-6767-01A-11D-1855-08	39421	11243974	144026586	995	128384											
FRMPD4	9758	broad.mit.edu	37	chrX	12728793	12728793	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctggcactttgggaggccAaggcaggcggatcacgaggt	16	10	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12728793	G	G	12728793	1	3	148	0	1	0	0	0	0	0	0	0	6119	145	5	5		5	FRMPD4	23	12728793	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	1484819	12728793	142541767	996	128385											
ACE2	59272	broad.mit.edu	37	chrX	15603664	15603664	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggaactgtcaaagagtaCagatttgtccaaaatctacc	8	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15603664	G	G	15603664	2	3	148	1	0	0	0	0	0	0	0	1	137	465	17	4		4	ACE2	23	15603664	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2874871	15603664	139666896	997	128386											
CTPS2	56474	broad.mit.edu	37	chrX	16716320	16716320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcagatgctcaaagaccCagcaggatataattttataa	7	7	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16716320	A	A	16716320	1	1	148	0	1	0	0	0	0	0	0	0	4057	609	21	2		2	CTPS2	23	16716320	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1112656	16716320	138554240	998	128387											
PPEF1	5475	broad.mit.edu	37	chrX	18822086	18822086	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccgaggagggggctgctAttttggaccagatgttactt	15	7	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18822086	G	G	18822086	3	3	148	1	0	0	0	0	1	0	0	0	12403	449	16	5	1184	5	PPEF1	23	18822086	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	2105766	18822086	136448474	999	128388											
GPR64	10149	broad.mit.edu	37	chrX	19049006	19049006	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaaaagaggcagctccaaGaggcacataccacatactca	8	11	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19049006	A	A	19049006	1	1	148	0	1	0	0	0	0	0	0	0	6770	957	33	4		4	GPR64	23	19049006	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	226920	19049006	136221554	1000	128389											
CNKSR2	22866	broad.mit.edu	37	chrX	21488972	21488972	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttattagaggatatttccTtgttcaactagaagaggtga	9	5	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21488972	G	G	21488972	1	3	148	0	1	0	0	0	0	0	0	0	3639	1624	56	5		5	CNKSR2	23	21488972	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	2439966	21488972	133781588	1001	128390											
DMD	1756	broad.mit.edu	37	chrX	32380886	32380886	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttagcacaagtttccaccTtggagtagatcttcctacct	6	11	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32380886	A	A	32380886	1	1	148	0	1	0	0	0	0	0	0	0	4620	1624	56	5		5	DMD	23	32380886	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	10891914	32380886	122889674	1002	128391											
FAM47B	170062	broad.mit.edu	37	chrX	34961736	34961736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccatctctgcccagagcCtcccaagactctggtgtcca	8	17	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34961736	A	A	34961736	3	1	148	1	0	0	0	0	1	0	0	0	5621	681	24	2	790	2	FAM47B	23	34961736	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2580850	34961736	120308824	1003	128392											
FAM47C	442444	broad.mit.edu	37	chrX	37029346	37029346	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaaaagctaagaagtgatGaacctttgattgaccccaag	10	7	0	5			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37029346	T	T	37029346	4	4	148	1	0	0	0	0	0	1	0	0	5622	1291	45	3	2865	3	FAM47C	23	37029346	Nonsense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2067610	37029346	118241214	1004	128393											
OTC	5009	broad.mit.edu	37	chrX	38226663	38226663	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcagcagatctgaaatttaGgataaaacagaaaggagagg	11	4	2	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38226663	C	C	38226663	3	2	148	1	0	0	0	0	1	0	0	0	11395	1000	35	4	203	4	OTC	23	38226663	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	1197317	38226663	117043897	1005	128394											
OTC	5009	broad.mit.edu	37	chrX	38254969	38254969	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttactgtcctgtgtcccCatggatggcacaaactctga	8	13	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38254969	A	A	38254969	1	1	148	0	1	0	0	0	0	0	0	0	11395	609	21	2		2	OTC	23	38254969	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	28306	38254969	117015591	1006	128395											
CXorf38	159013	broad.mit.edu	37	chrX	40506276	40506276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttggccacctcccaggCgtccacgggccagcggcccg	12	19	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40506276	A	A	40506276	3	1	148	1	0	0	0	0	1	0	0	0	4140	768	27	3	645	3	CXorf38	23	40506276	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2251307	40506276	114764284	1007	128396											
MED14	9282	broad.mit.edu	37	chrX	40572200	40572200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcaactagaatttctagCttgagaagacgccatggaac	8	10	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40572200	A	A	40572200	3	1	148	1	0	0	0	0	1	0	0	0	9525	796	28	3	3721	3	MED14	23	40572200	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	65924	40572200	114698360	1008	128397											
ARAF	369	broad.mit.edu	37	chrX	47424595	47424595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaggcccagccacgagGcccttacagacagctgaccc	10	17	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47424595	T	T	47424595	1	4	148	0	1	0	0	0	0	0	0	0	839	1218	42	3		3	ARAF	23	47424595	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	6852395	47424595	107845965	1009	128398											
CFP	5199	broad.mit.edu	37	chrX	47483656	47483656	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggaaggtcagggggctcaGagtggaggagagaagtgtta	19	3	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47483656	T	T	47483656	1	4	148	0	1	0	0	0	0	0	0	0	3323	957	33	3		3	CFP	23	47483656	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	59061	47483656	107786904	1010	128399											
SSX5	6758	broad.mit.edu	37	chrX	48049142	48049142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatcgcagtggtctggaaCtgaacatgcaatatctctga	9	8	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48049142	A	A	48049142	1	1	148	0	1	0	0	0	0	0	0	0	15326	580	20	3		3	SSX5	23	48049142	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	565486	48049142	107221418	1011	128400											
TFE3	7030	broad.mit.edu	37	chrX	48896622	48896622	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctcccagggcctctggatCtcaccttaccttgagcacct	7	18	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48896622	A	A	48896622	1	1	148	0	1	0	0	0	0	0	0	0	15923	928	32	3		3	TFE3	23	48896622	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	847480	48896622	106373938	1012	128401											
CCDC120	90060	broad.mit.edu	37	chrX	48921447	48921447	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcctggtgaacggccccAgttggtccgccggcggcccc	15	16	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48921447	T	T	48921447	3	4	148	1	0	0	0	0	1	0	0	0	2782	188	7	5	249	5	CCDC120	23	48921447	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	24825	48921447	106349113	1013	128402											
GPKOW	27238	broad.mit.edu	37	chrX	48978895	48978895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaagaataggagggagCaatgaagtcccactctatcc	11	8	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48978895	T	T	48978895	1	4	148	0	1	0	0	0	0	0	0	0	6678	725	25	4		4	GPKOW	23	48978895	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	57448	48978895	106291665	1014	128403											
MAGED1	9500	broad.mit.edu	37	chrX	51639760	51639760	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctggcagaacccagtcGcttggcagaacccagtgatt	11	13	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51639760	A	A	51639760	3	1	148	1	0	0	0	0	1	0	0	0	9275	1087	38	4	1191	4	MAGED1	23	51639760	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2660865	51639760	103630800	1015	128404											
MAGED1	9500	broad.mit.edu	37	chrX	51640681	51640681	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgtgaatacactgatgttTatccagaaatcattgaacgt	7	8	1	4			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51640681	A	A	51640681	3	1	148	1	0	0	0	0	1	0	0	0	9275	1754	61	5	1715	5	MAGED1	23	51640681	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	921	51640681	103629879	1016	128405											
ITIH5L	347365	broad.mit.edu	37	chrX	54780278	54780278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaggagggaaagggaagaGgttatgtctatttccccagc	15	6	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54780278	A	A	54780278	1	1	148	0	1	0	0	0	0	0	0	0	7978	1015	35	4		4	ITIH5L	23	54780278	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3139597	54780278	100490282	1017	128406											
ALAS2	212	broad.mit.edu	37	chrX	55040070	55040070	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagcttgctgttgagtgcTgcattgcccacctggactca	11	12	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55040070	G	G	55040070	2	3	148	1	0	0	0	0	0	0	0	1	485	1567	55	5		5	ALAS2	23	55040070	Silent	SNP	T	TCGA-49-6767-01A-11D-1855-08	259792	55040070	100230490	1018	128407											
MAGEH1	28986	broad.mit.edu	37	chrX	55479571	55479571	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtcgattgggggcgggGgacactgtatttgatatttg	16	4	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55479571	A	A	55479571	1	1	148	0	1	0	0	0	0	0	0	0	9280	1247	43	4		4	MAGEH1	23	55479571	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	439501	55479571	99790989	1019	128408											
FAM123B	139285	broad.mit.edu	37	chrX	63412380	63412380	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgtgctgaggcacaggcctCcatgggtttttctggatctt	12	9	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63412380	G	G	63412380	3	3	148	1	0	0	0	0	1	0	0	0	5469	864	30	4	2624	4	FAM123B	23	63412380	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	7932809	63412380	91858180	1020	128409											
FAM123B	139285	broad.mit.edu	37	chrX	63413235	63413235	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccaggcactgttataacAttatcagtcaggaagcatca	7	10	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63413235	T	T	63413235	1	4	148	0	1	0	0	0	0	0	0	0	5469	232	8	5		5	FAM123B	23	63413235	5'UTR	SNP	A	TCGA-49-6767-01A-11D-1855-08	855	63413235	91857325	1021	128410											
EDA	1896	broad.mit.edu	37	chrX	68840767	68840767	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcaggtcttgctaagcCtgtgacctgtcagctatgct	9	12	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68840767	T	T	68840767	1	4	148	0	1	0	0	0	0	0	0	0	4943	680	24	4		4	EDA	23	68840767	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	5427532	68840767	86429793	1022	128411											
EDA	1896	broad.mit.edu	37	chrX	69249397	69249397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagaaaaccaggttggctgGggattgctctcttcctgggt	14	9	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69249397	T	T	69249397	1	4	148	0	1	0	0	0	0	0	0	0	4943	1247	43	2		2	EDA	23	69249397	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	408630	69249397	86021163	1023	128412											
IL2RG	3561	broad.mit.edu	37	chrX	70330149	70330149	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggagcccaggggatcactgGagatatgtgtgcatatgtgg	16	6	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70330149	C	C	70330149	1	2	148	0	1	0	0	0	0	0	0	0	7758	1189	41	4		4	IL2RG	23	70330149	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	1080752	70330149	84940411	1024	128413											
ITGB1BP2	26548	broad.mit.edu	37	chrX	70521703	70521703	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggcagcactttgaccCtaataccaaccttcctggtg	9	13	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70521703	G	G	70521703	3	3	148	1	0	0	0	0	1	0	0	0	7962	681	24	4	49	4	ITGB1BP2	23	70521703	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	191554	70521703	84748857	1025	128414											
TAF1	6872	broad.mit.edu	37	chrX	70627911	70627911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatggacctacaaacactcCgcgaaaacgtgcgtaaacgc	8	13	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70627911	A	A	70627911	3	1	148	1	0	0	0	0	1	0	0	0	15632	652	23	1	4464	1	TAF1	23	70627911	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	106208	70627911	84642649	1026	128415											
OGT	8473	broad.mit.edu	37	chrX	70787503	70787503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggaacacgtcaggagaGgccagctggctgatgtctgc	15	9	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70787503	T	T	70787503	3	4	148	1	0	0	0	0	1	0	0	0	10942	1000	35	2	2821	2	OGT	23	70787503	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	159592	70787503	84483057	1027	128416											
PHKA1	5255	broad.mit.edu	37	chrX	71855067	71855067	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcatccgccagcggctaCagaggtaggagaggtctgtt	14	10	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71855067	T	T	71855067	3	4	148	1	0	0	0	0	1	0	0	0	11938	478	17	4	2087	4	PHKA1	23	71855067	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1067564	71855067	83415493	1028	128417											
CDX4	1046	broad.mit.edu	37	chrX	72667527	72667527	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgcaggcgccgccaaggcCagttcccccagcaggagccg	14	17	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667527	A	A	72667527	2	1	148	1	0	0	0	0	0	0	0	1	3214	581	21	2		2	CDX4	23	72667527	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	812460	72667527	82603033	1029	128418											
ABCB7	22	broad.mit.edu	37	chrX	74290242	74290242	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtagagtaaacaaggtgttCatatctatgagtgcttgtct	10	5	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74290242	T	T	74290242	3	4	148	1	0	0	0	0	1	0	0	0	46	826	29	4	963	4	ABCB7	23	74290242	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1622715	74290242	80980318	1030	128419											
MAGEE2	139599	broad.mit.edu	37	chrX	75004170	75004170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattagtgccatacaccggCcagtactccaagaatcgcat	9	12	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75004170	A	A	75004170	3	1	148	1	0	0	0	0	1	0	0	0	9278	740	26	3	858	3	MAGEE2	23	75004170	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	713928	75004170	80266390	1031	128420											
MAGEE2	139599	broad.mit.edu	37	chrX	75004996	75004996	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcccgagaccctggagctgGaaggatcaaaagtgaaatct	12	9	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75004996	C	C	75004996	1	2	148	0	1	0	0	0	0	0	0	0	9278	1189	41	4		4	MAGEE2	23	75004996	5'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	826	75004996	80265564	1032	128421											
ATRX	546	broad.mit.edu	37	chrX	76937081	76937081	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaggcttaattttctgttCatcgctgcttccctcaccta	5	14	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76937081	G	G	76937081	3	3	148	1	0	0	0	0	1	0	0	0	1212	835	29	4	3919	4	ATRX	23	76937081	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1932085	76937081	78333479	1033	128422											
ATP7A	538	broad.mit.edu	37	chrX	77266706	77266706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcttctttggtcaagaagGatcggtcagcaagtcactta	10	8	4	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77266706	T	T	77266706	3	4	148	1	0	0	0	0	1	0	0	0	1194	1174	41	3	1929	3	ATP7A	23	77266706	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	329625	77266706	78003854	1034	128423											
TAF9B	51616	broad.mit.edu	37	chrX	77395109	77395109	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatcttgcccgactccatGttatccagccactcgtcatc	6	17	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77395109	C	C	77395109	1	2	148	0	1	0	0	0	0	0	0	0	15655	1392	48	4		4	TAF9B	23	77395109	5'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	128403	77395109	77875451	1035	128424											
BRWD3	254065	broad.mit.edu	37	chrX	79980529	79980529	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatgatcctttgatcaaatGgatgggcttctagaacgaat	10	6	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79980529	A	A	79980529	3	1	148	1	0	0	0	0	1	0	0	0	1535	1348	47	4	4092	4	BRWD3	23	79980529	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	2585420	79980529	75290031	1036	128425											
POU3F4	5456	broad.mit.edu	37	chrX	82763626	82763626	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgatcatccatcaccgctcGccacacgtagcccaccactc	6	20	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763626	A	A	82763626	2	1	148	1	0	0	0	0	0	0	0	1	12373	1074	38	4		4	POU3F4	23	82763626	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	2783097	82763626	72506934	1037	128426											
POU3F4	5456	broad.mit.edu	37	chrX	82763897	82763897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactccgacgaggagacgCcaacctctgatgagttggaa	11	11	2	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763897	A	A	82763897	3	1	148	1	0	0	0	0	1	0	0	0	12373	739	26	3	567	3	POU3F4	23	82763897	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	271	82763897	72506663	1038	128427											
KLHL4	56062	broad.mit.edu	37	chrX	86887409	86887409	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctggactgtgatgcctccCatgtcaacacatcggcacgg	10	13	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86887409	A	A	86887409	2	1	148	1	0	0	0	0	0	0	0	1	8462	581	21	2		2	KLHL4	23	86887409	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	4123512	86887409	68383151	1039	128428											
CPXCR1	53336	broad.mit.edu	37	chrX	88009014	88009014	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cataacatttagaaggccttCgagggtgcactactaccgtc	9	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88009014	A	A	88009014	4	1	148	1	0	0	0	0	0	1	0	0	3868	893	31	3	601	3	CPXCR1	23	88009014	Nonsense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1121605	88009014	67261546	1040	128429											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177192	89177192	+	Missense_Mutation	SNP	T	A	A													acctcaatcatgtcgagaaaTaacgcagatacaggcagagt							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177192	A	A	89177192	3	1	148	1	0	0	0	0	1	0	0	0	15950	1403	49	5	110	5	TGIF2LX	23	89177192	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	1168178	89177192	66093368	1041	128430	554	2									
TGIF2LX	90316	broad.mit.edu	37	chrX	89177194	89177194	+	Missense_Mutation	SNP	A	G	G													ctcaatcatgtcgagaaataAcgcagatacaggcagagttc							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89177194	G	G	89177194	3	3	148	1	0	0	0	0	1	0	0	0	15950	43	2	5	112	5	TGIF2LX	23	89177194	Missense_Mutation	SNP	A	TCGA-49-6767-01A-11D-1855-08	2	89177194	66093366	1042	128431	554	2									
XKRX	402415	broad.mit.edu	37	chrX	100183084	100183084	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaacataaagaaagaaaaGgtgtatgtcatccagtaagt	9	4	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100183084	C	C	100183084	2	2	148	1	0	0	0	0	0	0	0	1	17566	987	35	4		4	XKRX	23	100183084	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	11005890	100183084	55087476	1043	128432											
ARMCX5	64860	broad.mit.edu	37	chrX	101857749	101857749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaatagcatggtcaagggCcaggtatattgtcctagttc	12	7	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101857749	A	A	101857749	3	1	148	1	0	0	0	0	1	0	0	0	966	739	26	3	682	3	ARMCX5	23	101857749	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	1674665	101857749	53412811	1044	128433											
BHLHB9	80823	broad.mit.edu	37	chrX	102004609	102004609	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcccctgctgtaactccagCtgtgttaggatttagatccc	9	12	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102004609	G	G	102004609	3	3	148	1	0	0	0	0	1	0	0	0	1426	797	28	4	688	4	BHLHB9	23	102004609	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	146860	102004609	53265951	1045	128434											
NXF3	56000	broad.mit.edu	37	chrX	102337821	102337821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaagtctgagagggaccCgcctggtacagcatcagcac	12	12	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102337821	A	A	102337821	1	1	148	0	1	0	0	0	0	0	0	0	10880	667	23	1		1	NXF3	23	102337821	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	333212	102337821	52932739	1046	128435											
TCEAL5	340543	broad.mit.edu	37	chrX	102529194	102529194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcttttcggcggcccgcgGctggctctctggcttggcct	15	15	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102529194	T	T	102529194	3	4	148	1	0	0	0	0	1	0	0	0	15796	1203	42	3	326	3	TCEAL5	23	102529194	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	191373	102529194	52741366	1047	128436											
RAB9B	51209	broad.mit.edu	37	chrX	103080375	103080375	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaaaggggaaatgctcagGgtccttcacatccgcatagt	10	10	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103080375	A	A	103080375	3	1	148	1	0	0	0	0	1	0	0	0	13067	1232	43	4	269	4	RAB9B	23	103080375	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	551181	103080375	52190185	1048	128437											
ESX1	80712	broad.mit.edu	37	chrX	103499355	103499355	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgctatggaagagcaactgcGacagccgcgcagcgtctcct	12	14	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103499355	T	T	103499355	1	4	148	0	1	0	0	0	0	0	0	0	5305	1073	37	3		3	ESX1	23	103499355	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	418980	103499355	51771205	1049	128438											
ATG4A	115201	broad.mit.edu	37	chrX	107394965	107394965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccacatcctaattctGggccaacagctccattgtgc	8	15	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107394965	T	T	107394965	1	4	148	0	1	0	0	0	0	0	0	0	1100	1363	47	2		2	ATG4A	23	107394965	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3895610	107394965	47875595	1050	128439											
IRS4	8471	broad.mit.edu	37	chrX	107978507	107978507	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccaggtgcctcctagcGgacagcagggttaacaggtg	14	11	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107978507	T	T	107978507	2	4	148	1	0	0	0	0	0	0	0	1	7912	1103	39	1		1	IRS4	23	107978507	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	583542	107978507	47292053	1051	128440											
ACSL4	2182	broad.mit.edu	37	chrX	108911376	108911376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctgtcagtccataaccCtggccaattgggcagcagaa	10	11	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108911376	A	A	108911376	3	1	148	1	0	0	0	0	1	0	0	0	179	680	24	2	767	2	ACSL4	23	108911376	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	932869	108911376	46359184	1052	128441											
ZCCHC16	340595	broad.mit.edu	37	chrX	111625057	111625058	+	Intron	DNP	CC	AA	AA													cgggaagtacaggctcagctCctccaggagaaaagattact							TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	111625058	AA	AA	111625057	1	1	148	0	1	0	0	0	0	0	0	0	17710	870	30	3		3	ZCCHC16	23	111625057	Intron	DNP	CC	TCGA-49-6767-01A-11D-1855-08	2713681	111625057	43645503	1053	128442											
HTR2C	3358	broad.mit.edu	37	chrX	113865397	113865397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtacatatctcctgggtcCtatgacctgcctaaaaaaag	9	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113865397	A	A	113865397	1	1	148	0	1	0	0	0	0	0	0	0	7513	696	24	2		2	HTR2C	23	113865397	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	2240340	113865397	41405163	1054	128443											
SLC6A14	11254	broad.mit.edu	37	chrX	115568916	115568916	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatgcttctgtggaatttgTaatggtagaaaggcaagctg	12	4	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115568916	A	A	115568916	1	1	148	0	1	0	0	0	0	0	0	0	14791	1653	57	5		5	SLC6A14	23	115568916	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	1703519	115568916	39701644	1055	128444											
FAM70A	55026	broad.mit.edu	37	chrX	119394645	119394645	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcataagagtcacactttAaattttgtaccctacacact	4	10	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119394645	T	T	119394645	1	4	148	0	1	0	0	0	0	0	0	0	5656	377	13	5		5	FAM70A	23	119394645	3'UTR	SNP	A	TCGA-49-6767-01A-11D-1855-08	3825729	119394645	35875915	1056	128445											
FAM70A	55026	broad.mit.edu	37	chrX	119425233	119425233	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaagcgtctgttagcctTtcgcacttgctgcctctggg	10	12	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119425233	G	G	119425233	1	3	148	0	1	0	0	0	0	0	0	0	5656	1856	64	5		5	FAM70A	23	119425233	Intron	SNP	T	TCGA-49-6767-01A-11D-1855-08	30588	119425233	35845327	1057	128446											
CUL4B	8450	broad.mit.edu	37	chrX	119672691	119672691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgacaaaactgctttaaaGtgctttaataaagcacacca	5	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119672691	T	T	119672691	1	4	148	0	1	0	0	0	0	0	0	0	4091	1044	36	3		3	CUL4B	23	119672691	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	247458	119672691	35597869	1058	128447											
C1GALT1C1	29071	broad.mit.edu	37	chrX	119760065	119760065	+	Nonstop_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacgcttttctaccacttcTcagtcattgtcagaaccatt	4	13	5	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119760065	A	A	119760065	4	1	148	1	0	0	0	0	0	0	0	0	1973	1564	54	5	3	5	C1GALT1C1	23	119760065	Nonstop_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	87374	119760065	35510495	1059	128448											
GRIA3	2892	broad.mit.edu	37	chrX	122551197	122551197	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atattaagcgacaaataactGattaaagactgtctctaaaa	5	6	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122551197	T	T	122551197	1	4	148	0	1	0	0	0	0	0	0	0	6835	1305	45	3		3	GRIA3	23	122551197	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	2791132	122551197	32719363	1060	128449											
THOC2	57187	broad.mit.edu	37	chrX	122767957	122767957	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaaacagtctatagttaGaacttcaaatataaaagtaa	5	4	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122767957	T	T	122767957	1	4	148	0	1	0	0	0	0	0	0	0	15988	957	33	3		3	THOC2	23	122767957	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	216760	122767957	32502603	1061	128450											
STAG2	10735	broad.mit.edu	37	chrX	123195227	123195227	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgatatttttgtttagacAgttttgtaagtagattttta	7	1	0	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123195227	T	T	123195227	1	4	148	0	1	0	0	0	0	0	0	0	15361	203	7	5		5	STAG2	23	123195227	Intron	SNP	A	TCGA-49-6767-01A-11D-1855-08	427270	123195227	32075333	1062	128451											
STAG2	10735	broad.mit.edu	37	chrX	123210221	123210221	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccagtaaaattgaagctcTgcacaagagaagaaatttac	8	7	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123210221	C	C	123210221	3	2	148	1	0	0	0	0	1	0	0	0	15361	1580	55	5	2667	5	STAG2	23	123210221	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	14994	123210221	32060339	1063	128452											
ODZ1	10178	broad.mit.edu	37	chrX	123515010	123515010	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctttcccaaaaacagaaggGacagcagcaaaccttggttg	9	11	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123515010	C	C	123515010	2	2	148	1	0	0	0	0	0	0	0	1	10929	1161	41	4		4	ODZ1	23	123515010	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	304789	123515010	31755550	1064	128453											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299761	125299761	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagatagtgcaccagcctGcgacgcgtcgccggccgctt	12	15	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299761	A	A	125299761	2	1	148	1	0	0	0	0	0	0	0	1	4298	1306	46	4		4	DCAF12L2	23	125299761	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1784751	125299761	29970799	1065	128454											
XPNPEP2	7512	broad.mit.edu	37	chrX	128881584	128881584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcttgtctctgcagaCacctgggagagttatgatct	9	11	3	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128881584	A	A	128881584	3	1	148	1	0	0	0	0	1	0	0	0	17570	492	17	3	518	3	XPNPEP2	23	128881584	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	3581823	128881584	26388976	1066	128455											
BCORL1	63035	broad.mit.edu	37	chrX	129149396	129149396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctccagcgaagccgtgcacgGacttcctgaggggcaaccac	12	15	0	1	rs138477961		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129149396	T	T	129149396	3	4	148	1	0	0	0	0	1	0	0	0	1392	1174	41	3	2658	3	BCORL1	23	129149396	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	267812	129149396	26121164	1067	128456											
GPR119	139760	broad.mit.edu	37	chrX	129519554	129519554	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcgctggcagtccaggctgGcaggtcgccatctttgggat	14	11	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129519554	C	C	129519554	1	2	148	0	1	0	0	0	0	0	0	0	6699	1218	42	4		4	GPR119	23	129519554	5'Flank	SNP	G	TCGA-49-6767-01A-11D-1855-08	370158	129519554	25751006	1068	128457											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217848	130217848	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggccgtcgtcggggaaacGtggtgcgaagggtgtttggc	20	8	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130217848	A	A	130217848	3	1	148	1	0	0	0	0	1	0	0	0	885	1145	40	4	470	4	ARHGAP36	23	130217848	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	698294	130217848	25052712	1069	128458											
IGSF1	3547	broad.mit.edu	37	chrX	130416645	130416645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcctcgacaccgtaggCtcacattctgacccatttgg	9	14	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130416645	A	A	130416645	3	1	148	1	0	0	0	0	1	0	0	0	7666	797	28	3	3062	3	IGSF1	23	130416645	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	198797	130416645	24853915	1070	128459											
PLAC1	10761	broad.mit.edu	37	chrX	133784951	133784951	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggctcttctggagccaaaGatgaacgtggacctcaaggc	12	11	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133784951	A	A	133784951	1	1	148	0	1	0	0	0	0	0	0	0	12107	957	33	4		4	PLAC1	23	133784951	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	3368306	133784951	21485609	1071	128460											
DDX26B	203522	broad.mit.edu	37	chrX	134680668	134680668	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctctgcctggaagtgaactAaccaaagaaccttttcgttg	8	11	1	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134680668	T	T	134680668	2	4	148	1	0	0	0	0	0	0	0	1	4386	349	13	5		5	DDX26B	23	134680668	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	895717	134680668	20589892	1072	128461											
SLC9A6	10479	broad.mit.edu	37	chrX	135067718	135067718	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggcgtcggcagcagtccCcgagcccgcaggctcatgcg	15	16	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135067718	A	A	135067718	2	1	148	1	0	0	0	0	0	0	0	1	14832	610	22	2		2	SLC9A6	23	135067718	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	387050	135067718	20202842	1073	128462											
GPR112	139378	broad.mit.edu	37	chrX	135428834	135428834	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacaggacagctacgtcctTgtctgatggtatcttacctc	9	11	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135428834	C	C	135428834	3	2	148	1	0	0	0	0	1	0	0	0	6694	1821	63	5	2979	5	GPR112	23	135428834	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	361116	135428834	19841726	1074	128463											
GPR101	83550	broad.mit.edu	37	chrX	136112696	136112696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgctgttgctgttacgacGactgggtgggaggctctccg	16	9	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136112696	T	T	136112696	3	4	148	1	0	0	0	0	1	0	0	0	6687	1058	37	3	391	3	GPR101	23	136112696	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	683862	136112696	19157864	1075	128464											
F9	2158	broad.mit.edu	37	chrX	138643882	138643882	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatacacgaacatcttcctCaaatttggatctggctatgt	7	9	3	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138643882	G	G	138643882	2	3	148	1	0	0	0	0	0	0	0	1	5397	813	29	4		4	F9	23	138643882	Silent	SNP	C	TCGA-49-6767-01A-11D-1855-08	2531186	138643882	16626678	1076	128465											
ATP11C	286410	broad.mit.edu	37	chrX	138908999	138908999	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactgaccaagagaaaagGgaaaaaattcagtttttcat	7	7	2	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138908999	T	T	138908999	1	4	148	0	1	0	0	0	0	0	0	0	1125	1247	43	2		2	ATP11C	23	138908999	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	265117	138908999	16361561	1077	128466											
SPANXC	64663	broad.mit.edu	37	chrX	140358175	140358175	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agattgatgttaacaatctcCcatattgtgagaacacacag	7	8	1	3			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140358175	G	G	140358175	1	3	148	0	1	0	0	0	0	0	0	0	15103	638	22	4		4	SPANXC	23	140358175	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1449176	140358175	14912385	1078	128467											
MAGEC2	51438	broad.mit.edu	37	chrX	141291679	141291679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctcctcttcctcatctGtgggatgctgtgcatctacc	7	15	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291679	T	T	141291679	3	4	148	1	0	0	0	0	1	0	0	0	9273	1377	48	3	1030	3	MAGEC2	23	141291679	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	933504	141291679	13978881	1079	128468											
AFF2	2334	broad.mit.edu	37	chrX	147743758	147743758	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaccctagcactgtactGgcaagccaggccagtggtca	10	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147743758	T	T	147743758	2	4	148	1	0	0	0	0	0	0	0	1	357	1335	47	2		2	AFF2	23	147743758	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	6452079	147743758	7526802	1080	128469											
CD99L2	83692	broad.mit.edu	37	chrX	149945946	149945946	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgtcattgctgccgtacCggccatcacctgaagaaaag	11	12	2	2	rs143706982		TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149945946	G	G	149945946	3	3	148	1	0	0	0	0	1	0	0	0	3081	652	23	4	298	4	CD99L2	23	149945946	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	2202188	149945946	5324614	1081	128470											
CD99L2	83692	broad.mit.edu	37	chrX	149962192	149962192	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaggtttgtattctccAccccctactatgtcttcaag	6	12	4	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149962192	G	G	149962192	2	3	148	1	0	0	0	0	0	0	0	1	3081	146	6	5		5	CD99L2	23	149962192	Silent	SNP	A	TCGA-49-6767-01A-11D-1855-08	16246	149962192	5308368	1082	128471											
CD99L2	83692	broad.mit.edu	37	chrX	149983442	149983442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaacataaaggaaacagCcaactgattaacaactgggt	7	9	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149983442	A	A	149983442	1	1	148	0	1	0	0	0	0	0	0	0	3081	754	26	3		3	CD99L2	23	149983442	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	21250	149983442	5287118	1083	128472											
GABRE	2564	broad.mit.edu	37	chrX	151123293	151123293	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaggcggccctgctgccaGgtactgccctcacaatcggg	13	15	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151123293	A	A	151123293	2	1	148	1	0	0	0	0	0	0	0	1	6230	987	35	4		4	GABRE	23	151123293	Silent	SNP	G	TCGA-49-6767-01A-11D-1855-08	1139851	151123293	4147267	1084	128473											
MAGEA5	4104	broad.mit.edu	37	chrX	151283214	151283214	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtaactcatagcatatGggatcactgctgggcacctg	10	11	2	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151283214	T	T	151283214	1	4	148	0	1	0	0	0	0	0	0	0	9259	1363	47	2		2	MAGEA5	23	151283214	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	159921	151283214	3987346	1085	128474											
PLXNB3	5365	broad.mit.edu	37	chrX	153043162	153043162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcctttcctgctgcccCacccctgctgtgcatatggt	10	15	0	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153043162	A	A	153043162	1	1	148	0	1	0	0	0	0	0	0	0	12220	609	21	2		2	PLXNB3	23	153043162	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	1759948	153043162	2227398	1086	128475											
SRPK3	26576	broad.mit.edu	37	chrX	153048509	153048509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggggacgcttacatcagGcgcctggctgccgaggccac	16	13	1	0			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153048509	T	T	153048509	3	4	148	1	0	0	0	0	1	0	0	0	15279	1194	42	3	710	3	SRPK3	23	153048509	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	5347	153048509	2222051	1087	128476											
PDZD4	57595	broad.mit.edu	37	chrX	153070738	153070738	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtctgctctggaccccGcacttggcttgtttcggtga	11	12	3	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153070738	T	T	153070738	1	4	148	0	1	0	0	0	0	0	0	0	11797	1102	38	3		3	PDZD4	23	153070738	Intron	SNP	G	TCGA-49-6767-01A-11D-1855-08	22229	153070738	2199822	1088	128477											
HCFC1	3054	broad.mit.edu	37	chrX	153221632	153221632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacacgtggcctcaggcCctgccctacctgcatggtga	11	17	1	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153221632	A	A	153221632	1	1	148	0	1	0	0	0	0	0	0	0	7057	638	22	2		2	HCFC1	23	153221632	Intron	SNP	C	TCGA-49-6767-01A-11D-1855-08	150894	153221632	2048928	1089	128478											
IRAK1	3654	broad.mit.edu	37	chrX	153277301	153277301	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttgggggatctgcccagGtgaacacatcagctctgaaa	12	9	3	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153277301	T	T	153277301	1	4	148	0	1	0	0	0	0	0	0	0	7891	1276	44	3		3	IRAK1	23	153277301	3'UTR	SNP	G	TCGA-49-6767-01A-11D-1855-08	55669	153277301	1993259	1090	128479											
PLXNA3	55558	broad.mit.edu	37	chrX	153694838	153694838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgactgtgagggacagCgagtgccagtttgtaaggtg	16	6	0	2			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153694838	A	A	153694838	3	1	148	1	0	0	0	0	1	0	0	0	12216	767	27	3	2977	3	PLXNA3	23	153694838	Missense_Mutation	SNP	C	TCGA-49-6767-01A-11D-1855-08	417537	153694838	1575722	1091	128480											
SLC10A3	8273	broad.mit.edu	37	chrX	153715937	153715937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgccacaatgaaggggGcctgggaggcatagtcagct	15	10	2	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153715937	T	T	153715937	3	4	148	1	0	0	0	0	1	0	0	0	14488	1203	42	3	94	3	SLC10A3	23	153715937	Missense_Mutation	SNP	G	TCGA-49-6767-01A-11D-1855-08	21099	153715937	1554623	1092	128481											
FUNDC2	65991	broad.mit.edu	37	chrX	154261737	154261737	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttgctaagaagcagccaTggtggcgtaagctgttcggg	14	7	0	1			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154261737	A	A	154261737	3	1	148	1	0	0	0	0	1	0	0	0	6158	1464	51	5	199	5	FUNDC2	23	154261737	Missense_Mutation	SNP	T	TCGA-49-6767-01A-11D-1855-08	545800	154261737	1008823	1093	128482											
HES4	57801	broad.mit.edu	37	chr1	935105	935105	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgtccaggatgagggttttGagctgagcgaggctctcgtt	16	8	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	935105	C	C	935105	2	2	149	1	0	0	0	0	0	0	0	1	7135	1277	45	4		4	HES4	1	935105	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08		935105	248315516	1	128483											
VPS13D	55187	broad.mit.edu	37	chr1	12378268	12378268	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaatcatgttactccttctCgccaccgtaactctagcagc	5	14	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12378268	T	T	12378268	3	4	149	1	0	0	0	0	1	0	0	0	17319	884	31	4	7406	4	VPS13D	1	12378268	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	11443163	12378268	236872353	2	128484											
CLCNKA	1187	broad.mit.edu	37	chr1	16351451	16351451	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagatcccagggggcttctGatggggggaatcgggaagct	17	8	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16351451	A	A	16351451	1	1	149	0	1	0	0	0	0	0	0	0	3500	1305	45	4		4	CLCNKA	1	16351451	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	3973183	16351451	232899170	3	128485											
UBR4	23352	broad.mit.edu	37	chr1	19499493	19499493	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaagagacctggacctttGagatcgcggcatcaagggtg	13	10	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19499493	C	C	19499493	4	2	149	1	0	0	0	0	0	1	0	0	17030	1294	45	4	12493	4	UBR4	1	19499493	Nonsense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	3148042	19499493	229751128	4	128486											
CAPZB	832	broad.mit.edu	37	chr1	19683078	19683078	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catctctgcaggtcagcactGaggccagcacctgtgggcac	12	14	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19683078	A	A	19683078	1	1	149	0	1	0	0	0	0	0	0	0	2669	1305	45	4		4	CAPZB	1	19683078	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	183585	19683078	229567543	5	128487											
RAP1GAP	5909	broad.mit.edu	37	chr1	21939640	21939640	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagttactcacccaccctCagtgagctgtgcccagatcc	7	17	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21939640	T	T	21939640	1	4	149	0	1	0	0	0	0	0	0	0	13145	841	29	4		4	RAP1GAP	1	21939640	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	2256562	21939640	227310981	6	128488											
RNF19B	127544	broad.mit.edu	37	chr1	33402454	33402454	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcaagacagtttgtccctCggctagggcagagaggttca	12	10	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33402454	T	T	33402454	3	4	149	1	0	0	0	0	1	0	0	0	13582	893	31	4	50	4	RNF19B	1	33402454	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	11462814	33402454	215848167	7	128489											
EPHA10	284656	broad.mit.edu	37	chr1	38227381	38227381	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaccccgccggctgagCggtccgatctcgcgcacctc	12	17	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38227381	T	T	38227381	2	4	149	1	0	0	0	0	0	0	0	1	5208	755	27	4		4	EPHA10	1	38227381	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	4824927	38227381	211023240	8	128490											
MACF1	23499	broad.mit.edu	37	chr1	39895004	39895004	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaacaaaccacaggtactTtgaaaagtgtgtctcttagc	7	8	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39895004	G	G	39895004	1	3	149	0	1	0	0	0	0	0	0	0	9232	1856	64	5		5	MACF1	1	39895004	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	1667623	39895004	209355617	9	128491											
TRIT1	54802	broad.mit.edu	37	chr1	40313078	40313078	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagccacggcagtgcaatgtCagacttggtggacaaaaatc	11	10	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40313078	G	G	40313078	1	3	149	0	1	0	0	0	0	0	0	0	16685	841	29	4		4	TRIT1	1	40313078	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	418074	40313078	208937543	10	128492											
KIAA0467	23334	broad.mit.edu	37	chr1	43893380	43893380	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttggcatgcagccccctCaggcgccccgagacctcatc	11	17	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43893380	T	T	43893380	4	4	149	1	0	0	0	0	0	1	0	0	8248	827	29	4	1115	4	KIAA0467	1	43893380	Nonsense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	3580302	43893380	205357241	11	128493											
SLC6A9	6536	broad.mit.edu	37	chr1	44468416	44468416	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	accagccccctggtccctctCcggctccggagtcccttcag	9	20	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44468416	G	G	44468416	1	3	149	0	1	0	0	0	0	0	0	0	14805	870	30	4		4	SLC6A9	1	44468416	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	575036	44468416	204782205	12	128494											
RNF220	55182	broad.mit.edu	37	chr1	45098082	45098082	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcctgcccggcccctccctCcgccccacccccggcctcct	7	27	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45098082	T	T	45098082	1	4	149	0	1	0	0	0	0	0	0	0	13594	870	30	4		4	RNF220	1	45098082	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	629666	45098082	204152539	13	128495											
PLK3	1263	broad.mit.edu	37	chr1	45271231	45271231	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtgacttttgtggccCgaaatcgtagtgcttgtact	10	9	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45271231	A	A	45271231	2	1	149	1	0	0	0	0	0	0	0	1	12192	644	23	1		1	PLK3	1	45271231	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	173149	45271231	203979390	14	128496											
EIF2B3	8891	broad.mit.edu	37	chr1	45316677	45316677	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctcattcactcgtttagcTacaaaagaaaaggaaaaaag	6	8	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45316677	C	C	45316677	1	2	149	0	1	0	0	0	0	0	0	0	5042	1536	53	5		5	EIF2B3	1	45316677	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	45446	45316677	203933944	15	128497											
TM2D1	83941	broad.mit.edu	37	chr1	62175070	62175070	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatgtgtttcattgccactgGaatccttacaagttatgttg	8	7	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62175070	C	C	62175070	3	2	149	1	0	0	0	0	1	0	0	0	16086	1174	41	4	361	4	TM2D1	1	62175070	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	16858393	62175070	187075551	16	128498											
CCDC18	343099	broad.mit.edu	37	chr1	93722039	93722039	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaagtccaagcacagagaGaaatagaaaggctctctagt	10	8	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93722039	A	A	93722039	3	1	149	1	0	0	0	0	1	0	0	0	2821	943	33	4	3942	4	CCDC18	1	93722039	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	31546969	93722039	155528582	17	128499											
PTBP2	58155	broad.mit.edu	37	chr1	97278831	97278831	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttataattttgtttcagaaGagatcacaaaatggctcttc	6	6	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97278831	C	C	97278831	5	2	149	1	0	0	0	0	0	0	1	0	12832	956	33	4	1520	4	PTBP2	1	97278831	Splice_Site	SNP	G	TCGA-50-5044-01A-21D-1855-08	3556792	97278831	151971790	18	128500											
CELSR2	1952	broad.mit.edu	37	chr1	109813785	109813785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacggggccctgtgggctGggtggaagctgtttgtcccc	17	12	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109813785	T	T	109813785	1	4	149	0	1	0	0	0	0	0	0	0	3252	1363	47	2		2	CELSR2	1	109813785	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	12534954	109813785	139436836	19	128501											
TSPAN2	10100	broad.mit.edu	37	chr1	115615417	115615417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttcagcgtctttccctGcctctctgccctccccctcc	4	22	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115615417	T	T	115615417	1	4	149	0	1	0	0	0	0	0	0	0	16769	1334	46	3		3	TSPAN2	1	115615417	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	5801632	115615417	133635204	20	128502											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858806	149858806	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccgcaacgacgaggaactGaacaagctgctgggcaaagt	12	10	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149858806	A	A	149858806	2	1	149	1	0	0	0	0	0	0	0	1	7245	1277	45	4		4	HIST2H2AC	1	149858806	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	34243389	149858806	99391815	21	128503											
OTUD7B	56957	broad.mit.edu	37	chr1	149915752	149915752	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcccttcagtgttccacCcgttcagaacctgtgcacca	7	16	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149915752	T	T	149915752	1	4	149	0	1	0	0	0	0	0	0	0	11413	638	22	4		4	OTUD7B	1	149915752	3'UTR	SNP	C	TCGA-50-5044-01A-21D-1855-08	56946	149915752	99334869	22	128504											
ECM1	1893	broad.mit.edu	37	chr1	150482562	150482562	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccctgctccttggtgccctCacccctatcttgcagtgggt	9	16	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150482562	T	T	150482562	1	4	149	0	1	0	0	0	0	0	0	0	4937	841	29	4		4	ECM1	1	150482562	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	566810	150482562	98768059	23	128505											
DUSP27	92235	broad.mit.edu	37	chr1	167097145	167097145	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcactatgcaagtggcagcaGagttggcaaagagatggata	13	6	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167097145	A	A	167097145	3	1	149	1	0	0	0	0	1	0	0	0	4864	942	33	4	2795	4	DUSP27	1	167097145	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	16614583	167097145	82153476	24	128506											
DCAF6	55827	broad.mit.edu	37	chr1	167944145	167944145	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttgtacaaatgataaacaGattgtatcctgctctggaga	8	8	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167944145	C	C	167944145	3	2	149	1	0	0	0	0	1	0	0	0	4307	933	33	4	344	4	DCAF6	1	167944145	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	847000	167944145	81306476	25	128507											
F5	2153	broad.mit.edu	37	chr1	169487715	169487715	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acggaagggttcccagtaatCtccccaccaagatttcttaa	7	12	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169487715	G	G	169487715	3	3	149	1	0	0	0	0	1	0	0	0	5391	913	32	4	406	4	F5	1	169487715	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1543570	169487715	79762906	26	128508											
CENPL	91687	broad.mit.edu	37	chr1	173780270	173780270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggacacaaaaagcatacCtgcaactgcgaacactgggg	11	10	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173780270	A	A	173780270	3	1	149	1	0	0	0	0	1	0	0	0	3266	695	24	2	1024	2	CENPL	1	173780270	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	4292555	173780270	75470351	27	128509											
MRPS14	63931	broad.mit.edu	37	chr1	174983875	174983875	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacggaagactatacgactaAgcctccagcgccgcttcaca	9	14	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174983875	G	G	174983875	3	3	149	1	0	0	0	0	1	0	0	0	9918	72	3	5	73	5	MRPS14	1	174983875	Missense_Mutation	SNP	A	TCGA-50-5044-01A-21D-1855-08	1203605	174983875	74266746	28	128510											
ABL2	27	broad.mit.edu	37	chr1	179078698	179078698	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcaggtgttggcaggactCagaagcaaataataaataca	11	6	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179078698	G	G	179078698	1	3	149	0	1	0	0	0	0	0	0	0	93	841	29	4		4	ABL2	1	179078698	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	4094823	179078698	70171923	29	128511											
CEP350	9857	broad.mit.edu	37	chr1	180062921	180062921	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtatttttgctcctcctCaaaaaatatctcacattcca	3	11	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180062921	G	G	180062921	3	3	149	1	0	0	0	0	1	0	0	0	3284	827	29	4	7811	4	CEP350	1	180062921	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	984223	180062921	69187700	30	128512											
RGS21	431704	broad.mit.edu	37	chr1	192316417	192316417	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattggttaaagaagaaaaaGatcacaatgctattgtcaag	8	4	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192316417	C	C	192316417	1	2	149	0	1	0	0	0	0	0	0	0	13413	957	33	4		4	RGS21	1	192316417	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	12253496	192316417	56934204	31	128513											
PTPRC	5788	broad.mit.edu	37	chr1	198718471	198718471	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtccctttttaaatactttCaaatttccacatgacaatga	3	9	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198718471	A	A	198718471	1	1	149	0	1	0	0	0	0	0	0	0	12905	841	29	3		3	PTPRC	1	198718471	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	6402054	198718471	50532150	32	128514											
IL10	3586	broad.mit.edu	37	chr1	206942090	206942090	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagctgtgcagagagataaGaaacatacagttaaaatcct	10	6	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206942090	A	A	206942090	1	1	149	0	1	0	0	0	0	0	0	0	7689	957	33	4		4	IL10	1	206942090	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	8223619	206942090	42308531	33	128515											
YOD1	55432	broad.mit.edu	37	chr1	207222742	207222742	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttggacaaaatcgatatctCtattgctcctccccaagtgt	6	12	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207222742	T	T	207222742	3	4	149	1	0	0	0	0	1	0	0	0	17615	922	32	4	380	4	YOD1	1	207222742	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	280652	207222742	42027879	34	128516											
CENPF	1063	broad.mit.edu	37	chr1	214816089	214816089	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agatgcagctgggcttggagGaggggctcgttccatccctg	16	10	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214816089	C	C	214816089	3	2	149	1	0	0	0	0	1	0	0	0	3261	1175	41	4	4450	4	CENPF	1	214816089	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	7593347	214816089	34434532	35	128517											
SPATA17	128153	broad.mit.edu	37	chr1	218023963	218023963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgccagtcagggtcttcaCgaagatctgcattttgacct	9	11	4	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218023963	A	A	218023963	1	1	149	0	1	0	0	0	0	0	0	0	15118	551	19	3		3	SPATA17	1	218023963	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	3207874	218023963	31226658	36	128518											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220427110	220427110	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagagtactcaaatacgtgGacaccaatttgcagaaacag	9	9	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220427110	A	A	220427110	1	1	149	0	1	0	0	0	0	0	0	0	13044	1189	41	4		4	RAB3GAP2	1	220427110	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	2403147	220427110	28823511	37	128519											
MOSC1	64757	broad.mit.edu	37	chr1	220978320	220978320	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catcgttaggtgcgagggctCctgggaaatctctacacacg	12	11	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220978320	G	G	220978320	1	3	149	0	1	0	0	0	0	0	0	0	9807	870	30	4		4	MOSC1	1	220978320	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	551210	220978320	28272301	38	128520											
LEFTY1	10637	broad.mit.edu	37	chr1	226109325	226109325	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccccaccatcagccaatGcgtccagagccatgaatgcc	7	17	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226109325	A	A	226109325	3	1	149	1	0	0	0	0	1	0	0	0	8787	1319	46	4		4	LEFTY1	1	226109325	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	5131005	226109325	23141296	39	128521											
ARV1	64801	broad.mit.edu	37	chr1	231115028	231115028	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgaagataaccatctgtgtGagttgtcaggtgtggggtgc	15	6	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231115028	C	C	231115028	1	2	149	0	1	0	0	0	0	0	0	0	1006	1305	45	4		4	ARV1	1	231115028	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	5005703	231115028	18135593	40	128522											
OR2W5	441932	broad.mit.edu	37	chr1	247655099	247655099	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctatggcgtgattgcagcCgcggtgctgaggatgaagtc	15	9	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247655099	T	T	247655099	3	4	149	1	0	0	0	0	1	0	0	0	11128	652	23	4	672	4	OR2W5	1	247655099	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	16540071	247655099	1595522	41	128523											
OR11L1	391189	broad.mit.edu	37	chr1	248004717	248004717	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccaacctggaaatcatcAgggaaggcagaaagcctgtg	12	9	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248004717	G	G	248004717	3	3	149	1	0	0	0	0	1	0	0	0	11024	188	7	5	490	5	OR11L1	1	248004717	Missense_Mutation	SNP	A	TCGA-50-5044-01A-21D-1855-08	349618	248004717	1245904	42	128524											
DDX1	1653	broad.mit.edu	37	chr2	15758387	15758387	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttacctctgatggaaaaaGacttcaggtataaaatttat	8	5	2	2	rs146515867		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15758387	C	C	15758387	3	2	149	1	0	0	0	0	1	0	0	0	4374	942	33	4	1261	4	DDX1	2	15758387	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08		15758387	227440986	43	128525											
SDC1	6382	broad.mit.edu	37	chr2	20404070	20404070	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacctgcaggaccagaagcaGagtgtgttggggaggtgggg	19	7	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20404070	C	C	20404070	1	2	149	0	1	0	0	0	0	0	0	0	14064	957	33	4		4	SDC1	2	20404070	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	4645683	20404070	222795303	44	128526											
HNRPLL	92906	broad.mit.edu	37	chr2	38791443	38791443	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagatcaccttgaagtaTcagagtaaattacttcacct	5	9	4	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38791443	A	A	38791443	1	1	149	0	1	0	0	0	0	0	0	0	7344	1450	50	5		5	HNRPLL	2	38791443	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	18387373	38791443	204407930	45	128527											
SLC8A1	6546	broad.mit.edu	37	chr2	40655752	40655752	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgttctcaatactttcacctCcatgatgccaatgctctcac	4	14	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40655752	G	G	40655752	3	3	149	1	0	0	0	0	1	0	0	0	14820	864	30	4	1400	4	SLC8A1	2	40655752	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1864309	40655752	202543621	46	128528											
MTIF2	4528	broad.mit.edu	37	chr2	55463886	55463886	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atattgtcttcatctaaactGagaccacaatccattcccgt	4	12	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55463886	A	A	55463886	2	1	149	1	0	0	0	0	0	0	0	1	10028	1277	45	4		4	MTIF2	2	55463886	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	14808134	55463886	187735487	47	128529											
MEIS1	4211	broad.mit.edu	37	chr2	66795918	66795918	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttgtggtagttcctcAtttttgactccaagagtgtc	9	7	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66795918	G	G	66795918	1	3	149	0	1	0	0	0	0	0	0	0	9560	232	8	5		5	MEIS1	2	66795918	Intron	SNP	A	TCGA-50-5044-01A-21D-1855-08	11332032	66795918	176403455	48	128530											
DYSF	8291	broad.mit.edu	37	chr2	71827930	71827930	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaggggcagccagccgtcGggggagctgctggcctcttt	17	12	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71827930	T	T	71827930	2	4	149	1	0	0	0	0	0	0	0	1	4899	1103	39	1		1	DYSF	2	71827930	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	5032012	71827930	171371443	49	128531											
SMYD1	150572	broad.mit.edu	37	chr2	88402637	88402637	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatacattggaaaagataGacaaggctcgttccgagggt	13	6	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88402637	A	A	88402637	3	1	149	1	0	0	0	0	1	0	0	0	14935	942	33	4	975	4	SMYD1	2	88402637	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	16574707	88402637	154796736	50	128532											
PROM2	150696	broad.mit.edu	37	chr2	95942163	95942163	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgggcaggacagagccgaGtgggccctcgatggcccata	15	14	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95942163	A	A	95942163	1	1	149	0	1	0	0	0	0	0	0	0	12662	1044	36	4		4	PROM2	2	95942163	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	7539526	95942163	147257210	51	128533											
RGPD4	285190	broad.mit.edu	37	chr2	108487524	108487524	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaacacttccggtgactttGagaaagatgatgatgcctat	9	8	0	5			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108487524	C	C	108487524	3	2	149	1	0	0	0	0	1	0	0	0	13396	1291	45	4	3142	4	RGPD4	2	108487524	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	12545361	108487524	134711849	52	128534											
GPR17	2840	broad.mit.edu	37	chr2	128409339	128409339	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagctgtgagcggggggcGccgtccaggccgagcgcaga	19	12	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128409339	A	A	128409339	1	1	149	0	1	0	0	0	0	0	0	0	6732	1102	38	4		4	GPR17	2	128409339	3'UTR	SNP	G	TCGA-50-5044-01A-21D-1855-08	19921815	128409339	114790034	53	128535											
SAP130	79595	broad.mit.edu	37	chr2	128783911	128783911	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatggttattactagattctGagatctgaatcaatactgag	8	5	3	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128783911	C	C	128783911	1	2	149	0	1	0	0	0	0	0	0	0	13942	1305	45	4		4	SAP130	2	128783911	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	374572	128783911	114415462	54	128536											
PTPN18	26469	broad.mit.edu	37	chr2	131128902	131128902	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttccctgcccaatttctCaggctaaccccttcttcatc	3	17	4	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131128902	G	G	131128902	1	3	149	0	1	0	0	0	0	0	0	0	12890	841	29	4		4	PTPN18	2	131128902	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	2344991	131128902	112070471	55	128537											
TTN	7273	broad.mit.edu	37	chr2	179528853	179528853	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatattagtatttttacactCagaaaatacagagattacta	5	5	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179528853	A	A	179528853	1	1	149	0	1	0	0	0	0	0	0	0	16861	841	29	3		3	TTN	2	179528853	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	48399951	179528853	63670520	56	128538											
CERKL	375298	broad.mit.edu	37	chr2	182412549	182412549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagatacttttcgactcacCagatttgggagatccctgtg	11	9	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182412549	A	A	182412549	3	1	149	1	0	0	0	0	1	0	0	0	3298	608	21	2	459	2	CERKL	2	182412549	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	2883696	182412549	60786824	57	128539											
STK17B	9262	broad.mit.edu	37	chr2	197027990	197027990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatggttttcttacctccCtagctctttagatgtaagta	6	9	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197027990	A	A	197027990	3	1	149	1	0	0	0	0	1	0	0	0	15409	681	24	2	1028	2	STK17B	2	197027990	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	14615441	197027990	46171383	58	128540											
PLCL1	5334	broad.mit.edu	37	chr2	198948761	198948761	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactggggaaaaacacggaaAcatttagaaacaatggcctt	10	7	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198948761	C	C	198948761	3	2	149	1	0	0	0	0	1	0	0	0	12134	43	2	5	526	5	PLCL1	2	198948761	Missense_Mutation	SNP	A	TCGA-50-5044-01A-21D-1855-08	1920771	198948761	44250612	59	128541											
CFLAR	8837	broad.mit.edu	37	chr2	202005029	202005029	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccactattgaagatttatTtgataataatttgtaagttt	5	3	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202005029	G	G	202005029	1	3	149	0	1	0	0	0	0	0	0	0	3322	1856	64	5		5	CFLAR	2	202005029	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	3056268	202005029	41194344	60	128542											
CYP27A1	1593	broad.mit.edu	37	chr2	219677453	219677453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcgatacctggatggttgGaatgccatcttttcctttgg	11	8	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219677453	T	T	219677453	3	4	149	1	0	0	0	0	1	0	0	0	4191	1183	41	3	839	3	CYP27A1	2	219677453	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	17672424	219677453	23521920	61	128543											
COL4A3	1285	broad.mit.edu	37	chr2	228118392	228118392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattagtgttgtgccttccCgtgtctaggatgaagtcctt	11	8	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228118392	A	A	228118392	1	1	149	0	1	0	0	0	0	0	0	0	3723	667	23	1		1	COL4A3	2	228118392	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	8440939	228118392	15080981	62	128544											
ALPI	248	broad.mit.edu	37	chr2	233323489	233323489	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaatggcccgtgcaggggGaccagggtgccagggatggg	20	9	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233323489	T	T	233323489	1	4	149	0	1	0	0	0	0	0	0	0	543	1189	41	3		3	ALPI	2	233323489	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	5205097	233323489	9875884	63	128545											
PPARG	5468	broad.mit.edu	37	chr3	12475337	12475337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctaggcctccaaggcGgggcccagaggattttttga	14	11	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12475337	T	T	12475337	1	4	149	0	1	0	0	0	0	0	0	0	12395	1131	39	1		1	PPARG	3	12475337	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08		12475337	185547093	64	128546											
RAF1	5894	broad.mit.edu	37	chr3	12632257	12632257	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaatttagggacaaatttGatgcctgggtcccagagagg	12	8	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12632257	C	C	12632257	1	2	149	0	1	0	0	0	0	0	0	0	13110	1305	45	4		4	RAF1	3	12632257	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	156920	12632257	185390173	65	128547											
TRANK1	9881	broad.mit.edu	37	chr3	36872628	36872628	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatatgctgctcgtaagactCgctgttcctctcctgacact	8	13	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36872628	A	A	36872628	4	1	149	1	0	0	0	0	0	1	0	0	16578	893	31	3	475	3	TRANK1	3	36872628	Nonsense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	24240371	36872628	161149802	66	128548											
MYD88	4615	broad.mit.edu	37	chr3	38180462	38180462	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctctgtaggccgactgctcGagctgcttaccaagctgggc	12	14	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38180462	C	C	38180462	3	2	149	1	0	0	0	0	1	0	0	0	10117	1059	37	4	312	4	MYD88	3	38180462	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1307834	38180462	159841968	67	128549											
NKTR	4820	broad.mit.edu	37	chr3	42679413	42679413	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatcattcacagtgtagTagatcatcttcatatacttc	6	8	5	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42679413	C	C	42679413	2	2	149	1	0	0	0	0	0	0	0	1	10543	1635	57	5		5	NKTR	3	42679413	Silent	SNP	T	TCGA-50-5044-01A-21D-1855-08	4498951	42679413	155343017	68	128550											
NEK4	6787	broad.mit.edu	37	chr3	52767657	52767657	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcatttagcaagcattcagGacttatggcccatcttctaa	7	10	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52767657	A	A	52767657	1	1	149	0	1	0	0	0	0	0	0	0	10421	1189	41	4		4	NEK4	3	52767657	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	10088244	52767657	145254773	69	128551											
C3orf63	23272	broad.mit.edu	37	chr3	56667420	56667420	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcactacacagtggctcaagGagatgtttattgttgaagtc	10	7	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56667420	C	C	56667420	2	2	149	1	0	0	0	0	0	0	0	1	2261	1161	41	4		4	C3orf63	3	56667420	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	3899763	56667420	141355010	70	128552											
ROBO2	6092	broad.mit.edu	37	chr3	77607240	77607240	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagggatttacttttccGggtagagatccaagagcaac	12	7	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77607240	T	T	77607240	2	4	149	1	0	0	0	0	0	0	0	1	13625	1103	39	1		1	ROBO2	3	77607240	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	20939820	77607240	120415190	71	128553											
DRD3	1814	broad.mit.edu	37	chr3	113850266	113850266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgcaggtgtgacaagagGgaatcttgacatttctgggg	15	6	3	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113850266	A	A	113850266	1	1	149	0	1	0	0	0	0	0	0	0	4798	1247	43	4		4	DRD3	3	113850266	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	36243026	113850266	84172164	72	128554											
NR1I2	8856	broad.mit.edu	37	chr3	119528972	119528972	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcgcctgcgagatcaccCggaagacccggcgacagtgc	15	14	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119528972	A	A	119528972	2	1	149	1	0	0	0	0	0	0	0	1	10715	643	23	1		1	NR1I2	3	119528972	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	5678706	119528972	78493458	73	128555											
ADCY5	111	broad.mit.edu	37	chr3	123005609	123005609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccagatgtcgtactgagGctttcgtgcccctatcaccc	9	16	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123005609	A	A	123005609	3	1	149	1	0	0	0	0	1	0	0	0	297	1203	42	4	213	4	ADCY5	3	123005609	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	3476637	123005609	75016821	74	128556											
MCM2	4171	broad.mit.edu	37	chr3	127339966	127339966	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaacaatgagctgttgctCttcatactgaagcagttagt	9	8	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127339966	G	G	127339966	2	3	149	1	0	0	0	0	0	0	0	1	9479	900	32	4		4	MCM2	3	127339966	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	4334357	127339966	70682464	75	128557											
PIK3CA	5290	broad.mit.edu	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4	rs121913273		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178936082	A	A	178936082	3	1	149	1	0	0	0	0	1	0	0	0	12008	1291	45	4	1658	4	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	51596116	178936082	19086348	76	128558											
ABLIM2	84448	broad.mit.edu	37	chr4	8082509	8082509	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctggccattcttgatttCtgtgccgcagcccccacaac	9	16	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8082509	T	T	8082509	3	4	149	1	0	0	0	0	1	0	0	0	95	922	32	4	1584	4	ABLIM2	4	8082509	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08		8082509	183071767	77	128559											
CC2D2A	57545	broad.mit.edu	37	chr4	15539654	15539654	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atcgggcagtgatagagcagGaggtgagggagagagcagcc	19	6	0	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15539654	C	C	15539654	3	2	149	1	0	0	0	0	1	0	0	0	2754	1175	41	4	2158	4	CC2D2A	4	15539654	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	7457145	15539654	175614622	78	128560											
PROM1	8842	broad.mit.edu	37	chr4	16019964	16019964	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgcctcagttcagggttGctattcagctggcttagaga	11	10	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16019964	A	A	16019964	2	1	149	1	0	0	0	0	0	0	0	1	12661	1310	46	4		4	PROM1	4	16019964	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	480310	16019964	175134312	79	128561											
STIM2	57620	broad.mit.edu	37	chr4	27004688	27004688	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagggagctgaatgtgaaTtgagtagacgtcagtatgca	16	4	1	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27004688	C	C	27004688	2	2	149	1	0	0	0	0	0	0	0	1	15402	1490	52	5		5	STIM2	4	27004688	Silent	SNP	T	TCGA-50-5044-01A-21D-1855-08	10984724	27004688	164149588	80	128562											
TBC1D1	23216	broad.mit.edu	37	chr4	38029288	38029288	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaatatttttttatttccTaaaaccttggaagtctgaag	5	5	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38029288	C	C	38029288	1	2	149	0	1	0	0	0	0	0	0	0	15716	1537	53	5		5	TBC1D1	4	38029288	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	11024600	38029288	153124988	81	128563											
UBA6	55236	broad.mit.edu	37	chr4	68499189	68499189	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaactgtgtccactctgtatCttctagaatgggagagaaaa	9	7	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68499189	G	G	68499189	3	3	149	1	0	0	0	0	1	0	0	0	16958	912	32	4	1186	4	UBA6	4	68499189	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	30469901	68499189	122655087	82	128564											
AFP	174	broad.mit.edu	37	chr4	74302841	74302841	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttactttcttggttgcagttGaaaacacgtttcatgaagtt	8	6	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74302841	C	C	74302841	1	2	149	0	1	0	0	0	0	0	0	0	363	1305	45	4		4	AFP	4	74302841	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	5803652	74302841	116851435	83	128565											
FRAS1	80144	broad.mit.edu	37	chr4	79373458	79373458	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctacagaattgatctacaGaatcaccagacagccccagc	7	14	2	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79373458	C	C	79373458	3	2	149	1	0	0	0	0	1	0	0	0	6102	942	33	4	6974	4	FRAS1	4	79373458	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	5070617	79373458	111780818	84	128566											
HPSE	10855	broad.mit.edu	37	chr4	84229973	84229973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagctgcactctgacccCtaaggccagcgctgcttcac	10	15	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84229973	A	A	84229973	1	1	149	0	1	0	0	0	0	0	0	0	7411	696	24	2		2	HPSE	4	84229973	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	4856515	84229973	106924303	85	128567											
CCDC109B	55013	broad.mit.edu	37	chr4	110595215	110595215	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcccaaggctttgttgtaGgagcaatgactgttggtatg	13	6	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110595215	A	A	110595215	1	1	149	0	1	0	0	0	0	0	0	0	2771	1015	35	4		4	CCDC109B	4	110595215	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	26365242	110595215	80559061	86	128568											
METTL14	57721	broad.mit.edu	37	chr4	119631267	119631267	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtacagaagaaattgagaGacttcgaccaaaatcgcctc	8	9	0	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119631267	C	C	119631267	3	2	149	1	0	0	0	0	1	0	0	0	9591	942	33	4	1223	4	METTL14	4	119631267	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	9036052	119631267	71523009	87	128569											
SPATA5	166378	broad.mit.edu	37	chr4	123900636	123900636	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacttcctaggctaaacttTaaaaaaatatttttcttaat	3	6	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123900636	A	A	123900636	1	1	149	0	1	0	0	0	0	0	0	0	15127	1769	61	5		5	SPATA5	4	123900636	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	4269369	123900636	67253640	88	128570											
PHF17	79960	broad.mit.edu	37	chr4	129764222	129764222	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgcttgcctgaccgtgCatgaatatatgctatcccat	8	10	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129764222	T	T	129764222	1	4	149	0	1	0	0	0	0	0	0	0	11923	725	25	4		4	PHF17	4	129764222	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	5863586	129764222	61390054	89	128571											
GAB1	2549	broad.mit.edu	37	chr4	144359756	144359756	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaacaaattgcgaaaaggtCagctctagttgacttcttct	7	8	4	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144359756	G	G	144359756	1	3	149	0	1	0	0	0	0	0	0	0	6208	841	29	4		4	GAB1	4	144359756	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	14595534	144359756	46794520	90	128572											
SMARCA5	8467	broad.mit.edu	37	chr4	144465861	144465861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgtgtataataaaagttGgtgatttgagttgtttccca	9	4	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144465861	T	T	144465861	1	4	149	0	1	0	0	0	0	0	0	0	14885	1363	47	2		2	SMARCA5	4	144465861	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	106105	144465861	46688415	91	128573											
NR3C2	4306	broad.mit.edu	37	chr4	149075965	149075965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttcctctgggctttgcGggggtgggggtgggggtggg	22	8	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149075965	T	T	149075965	3	4	149	1	0	0	0	0	1	0	0	0	10726	1116	39	1	872	1	NR3C2	4	149075965	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	4610104	149075965	42078311	92	128574											
FGB	2244	broad.mit.edu	37	chr4	155491675	155491675	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggcagatactactggggtgGacagtacacctgggacatgg	15	9	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155491675	A	A	155491675	3	1	149	1	0	0	0	0	1	0	0	0	5888	1174	41	4	1379	4	FGB	4	155491675	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	6415710	155491675	35662601	93	128575											
GUCY1A3	2982	broad.mit.edu	37	chr4	156629498	156629498	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccatatacctgtagaactCacattttctccaaaaatatt	3	10	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156629498	A	A	156629498	1	1	149	0	1	0	0	0	0	0	0	0	6959	841	29	3		3	GUCY1A3	4	156629498	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	1137823	156629498	34524778	94	128576											
FAT1	2195	broad.mit.edu	37	chr4	187519168	187519168	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacactggcaaacaaagcctCcgttgtcgacaacacacgtg	8	13	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187519168	T	T	187519168	3	4	149	1	0	0	0	0	1	0	0	0	5746	855	30	4	1571	4	FAT1	4	187519168	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	30889670	187519168	3635108	95	128577											
PDCD6	10016	broad.mit.edu	37	chr5	289024	289024	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgattctgaaagaatctctCcagttttactggaattagat	7	6	2	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	289024	T	T	289024	1	4	149	0	1	0	0	0	0	0	0	0	11717	870	30	4		4	PDCD6	5	289024	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08		289024	180626236	96	128578											
EXOC3	11336	broad.mit.edu	37	chr5	454098	454098	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcacgcggatgcaggacctCgcatcggaagacctggaagc	14	12	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	454098	A	A	454098	2	1	149	1	0	0	0	0	0	0	0	1	5345	871	31	3		3	EXOC3	5	454098	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	165074	454098	180461162	97	128579											
C5orf42	65250	broad.mit.edu	37	chr5	37169148	37169148	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagagtcctgttgaggtgtCaaattttcttgtccaacata	9	7	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37169148	G	G	37169148	3	3	149	1	0	0	0	0	1	0	0	0	2324	825	29	4	2691	4	C5orf42	5	37169148	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	36715050	37169148	143746112	98	128580											
HEATR7B2	133558	broad.mit.edu	37	chr5	41019038	41019038	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcacttttcagattttccaGaggtggaaggggcagcagcc	12	9	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41019038	C	C	41019038	3	2	149	1	0	0	0	0	1	0	0	0	7102	933	33	4	2305	4	HEATR7B2	5	41019038	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	3849890	41019038	139896222	99	128581											
SKIV2L2	23517	broad.mit.edu	37	chr5	54603853	54603853	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaaaatggcggacgcAttcggagatgagctgttcag	12	10	1	2	rs145515923		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54603853	G	G	54603853	2	3	149	1	0	0	0	0	0	0	0	1	14473	204	8	5		5	SKIV2L2	5	54603853	Silent	SNP	A	TCGA-50-5044-01A-21D-1855-08	13584815	54603853	126311407	100	128582											
IQGAP2	10788	broad.mit.edu	37	chr5	75970457	75970457	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcttcagcacgcagcctcCaacaagctgtttgaaggaga	10	11	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75970457	A	A	75970457	2	1	149	1	0	0	0	0	0	0	0	1	7885	581	21	2		2	IQGAP2	5	75970457	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	21366604	75970457	104944803	101	128583											
BHMT	635	broad.mit.edu	37	chr5	78417047	78417047	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaactgattccagtattttGaacacgttgaagaagctgtg	9	6	0	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78417047	C	C	78417047	3	2	149	1	0	0	0	0	1	0	0	0	1431	1291	45	4	502	4	BHMT	5	78417047	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	2446590	78417047	102498213	102	128584											
GPR98	84059	broad.mit.edu	37	chr5	90020705	90020705	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttggatgaatcagcttctGgctggtgtttctttactttg	10	6	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90020705	C	C	90020705	3	2	149	1	0	0	0	0	1	0	0	0	6787	1348	47	4	9987	4	GPR98	5	90020705	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	11603658	90020705	90894555	103	128585											
MCTP1	79772	broad.mit.edu	37	chr5	94245197	94245197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatctagaaaagcacgctgTgtgctatttgaaaaaaagat	9	5	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94245197	C	C	94245197	1	2	149	0	1	0	0	0	0	0	0	0	9493	1711	59	5		5	MCTP1	5	94245197	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	4224492	94245197	86670063	104	128586											
FSTL4	23105	broad.mit.edu	37	chr5	132569145	132569145	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgggtctggaacagctgctCgtggccggaagcatggcagg	18	9	1	0	rs140732785		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132569145	A	A	132569145	4	1	149	1	0	0	0	0	0	1	0	0	6139	893	31	3	1585	3	FSTL4	5	132569145	Nonsense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	38323948	132569145	48346115	105	128587											
HARS	3035	broad.mit.edu	37	chr5	140056866	140056866	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagtttcaactttaggactGagggcagtgggacggctgct	14	8	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140056866	A	A	140056866	1	1	149	0	1	0	0	0	0	0	0	0	7025	1305	45	4		4	HARS	5	140056866	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	7487721	140056866	40858394	106	128588											
KCTD16	57528	broad.mit.edu	37	chr5	143853393	143853393	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctgtggtcccgtgacaCgccagaccaacatccagact	8	15	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143853393	T	T	143853393	3	4	149	1	0	0	0	0	1	0	0	0	8173	536	19	4	1009	4	KCTD16	5	143853393	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	3796527	143853393	37061867	107	128589											
FBXO38	81545	broad.mit.edu	37	chr5	147819233	147819233	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacactctaactttggagcaGaagctatttagtggtcccta	9	9	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147819233	A	A	147819233	2	1	149	1	0	0	0	0	0	0	0	1	5803	933	33	4		4	FBXO38	5	147819233	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	3965840	147819233	33096027	108	128590											
ABLIM3	22885	broad.mit.edu	37	chr5	148624548	148624548	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctactatgcttcggagtctGagtactggacctaccatggg	11	11	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148624548	A	A	148624548	3	1	149	1	0	0	0	0	1	0	0	0	96	1291	45	4	1514	4	ABLIM3	5	148624548	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	805315	148624548	32290712	109	128591											
CSF1R	1436	broad.mit.edu	37	chr5	149439149	149439149	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgacacaggtggcaggtGagggctgcatagccacccat	13	12	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149439149	A	A	149439149	1	1	149	0	1	0	0	0	0	0	0	0	3966	1305	45	4		4	CSF1R	5	149439149	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	814601	149439149	31476111	110	128592											
CD74	972	broad.mit.edu	37	chr5	149782841	149782841	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaacccgggtggacagcaggGatgtggctgacctcttcctg	15	11	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149782841	A	A	149782841	2	1	149	1	0	0	0	0	0	0	0	1	3065	1164	41	4		4	CD74	5	149782841	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	343692	149782841	31132419	111	128593											
G3BP1	10146	broad.mit.edu	37	chr5	151183593	151183593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgagaggccctccccgtGgaggcatggtgcagaaacca	14	11	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151183593	A	A	151183593	3	1	149	1	0	0	0	0	1	0	0	0	6201	1349	47	4	1384	4	G3BP1	5	151183593	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1400752	151183593	29731667	112	128594											
FABP6	2172	broad.mit.edu	37	chr5	159640748	159640748	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcttctgactcaggttctGagagctgtgttgtctgcgtg	12	9	5	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159640748	A	A	159640748	2	1	149	1	0	0	0	0	0	0	0	1	5407	1277	45	4		4	FABP6	5	159640748	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	8457155	159640748	21274512	113	128595											
MAT2B	27430	broad.mit.edu	37	chr5	162943529	162943529	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttattcttctctaggagctGctgttttgaggattcctatt	8	7	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162943529	C	C	162943529	3	2	149	1	0	0	0	0	1	0	0	0	9423	1319	46	4	584	4	MAT2B	5	162943529	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	3302781	162943529	17971731	114	128596											
DOK3	79930	broad.mit.edu	37	chr5	176931453	176931453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcctggtggcatctccCgaagctctccgggggtgtcc	14	14	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176931453	A	A	176931453	3	1	149	1	0	0	0	0	1	0	0	0	4738	652	23	1	824	1	DOK3	5	176931453	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	13987924	176931453	3983807	115	128597											
AGXT2L2	85007	broad.mit.edu	37	chr5	177651798	177651798	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccctggcccagtctgaccatCgtctccccacccctgaagac	7	20	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177651798	G	G	177651798	1	3	149	0	1	0	0	0	0	0	0	0	407	899	31	4		4	AGXT2L2	5	177651798	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	720345	177651798	3263462	116	128598											
GFPT2	9945	broad.mit.edu	37	chr5	179731879	179731879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaatcagtgccaggggccCgtgcttcagctccccagcca	11	16	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179731879	A	A	179731879	3	1	149	1	0	0	0	0	1	0	0	0	6410	652	23	1	325	1	GFPT2	5	179731879	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	2080081	179731879	1183381	117	128599											
RANBP9	10048	broad.mit.edu	37	chr6	13644815	13644815	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattctccttctcgatctccGataggaaatcgatctatctg	6	12	5	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13644815	A	A	13644815	2	1	149	1	0	0	0	0	0	0	0	1	13140	1048	37	4		4	RANBP9	6	13644815	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08		13644815	157470252	118	128600											
MYLIP	29116	broad.mit.edu	37	chr6	16130890	16130890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgagaaaccggatctccCagcagatggatgggctagcc	12	12	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16130890	A	A	16130890	3	1	149	1	0	0	0	0	1	0	0	0	10149	595	21	2	196	2	MYLIP	6	16130890	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	2486075	16130890	154984177	119	128601											
NRSN1	140767	broad.mit.edu	37	chr6	24134591	24134591	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgtctgtgggtccaggcaGgcacaggctgcagctgaggg	17	10	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24134591	A	A	24134591	2	1	149	1	0	0	0	0	0	0	0	1	10757	991	35	4		4	NRSN1	6	24134591	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	8003701	24134591	146980476	120	128602											
ZNF391	346157	broad.mit.edu	37	chr6	27368615	27368615	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacacaccttattgaacatCaaagaactcacactggagag	7	10	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27368615	G	G	27368615	3	3	149	1	0	0	0	0	1	0	0	0	18006	827	29	4	468	4	ZNF391	6	27368615	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	3234024	27368615	143746452	121	128603											
CLIC1	1192	broad.mit.edu	37	chr6	31701437	31701437	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcagggttcagagctgcCagcttggggtacctgaaagc	14	10	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31701437	T	T	31701437	2	4	149	1	0	0	0	0	0	0	0	1	3557	581	21	4		4	CLIC1	6	31701437	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	4332822	31701437	139413630	122	128604											
HSD17B8	7923	broad.mit.edu	37	chr6	33173334	33173334	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggtcaggttgagttggacGaggtcagccagccaagtggt	16	7	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33173334	A	A	33173334	1	1	149	0	1	0	0	0	0	0	0	0	7456	1073	37	4		4	HSD17B8	6	33173334	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	1471897	33173334	137941733	123	128605											
TAPBP	6892	broad.mit.edu	37	chr6	33271855	33271855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctcttgggagtaggtgGggaaagtccaccaacctcag	14	10	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33271855	T	T	33271855	1	4	149	0	1	0	0	0	0	0	0	0	15671	1247	43	2		2	TAPBP	6	33271855	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	98521	33271855	137843212	124	128606											
GRM4	2914	broad.mit.edu	37	chr6	33996040	33996040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgggcacgttctgctccGggtggaagaggatgatgtag	17	7	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33996040	T	T	33996040	3	4	149	1	0	0	0	0	1	0	0	0	6865	1116	39	1	200	1	GRM4	6	33996040	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	724185	33996040	137119027	125	128607											
ANKS1A	23294	broad.mit.edu	37	chr6	35047426	35047426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaccgtgaagaacctctGggagctagagctcgtcaatg	12	10	2	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35047426	T	T	35047426	3	4	149	1	0	0	0	0	1	0	0	0	688	1357	47	2	2475	2	ANKS1A	6	35047426	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1051386	35047426	136067641	126	128608											
XPO5	57510	broad.mit.edu	37	chr6	43543455	43543455	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggagctgctggggctgggaGagggtgtcgggaccggccca	21	10	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43543455	C	C	43543455	1	2	149	0	1	0	0	0	0	0	0	0	17574	957	33	4		4	XPO5	6	43543455	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	8496029	43543455	127571612	127	128609											
CENPQ	55166	broad.mit.edu	37	chr6	49456172	49456172	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggtggaagaagaagaggaGagagtaaaacaggtaattat	15	1	0	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49456172	C	C	49456172	3	2	149	1	0	0	0	0	1	0	0	0	3271	933	33	4	607	4	CENPQ	6	49456172	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	5912717	49456172	121658895	128	128610											
SEC63	11231	broad.mit.edu	37	chr6	108222727	108222727	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttttaattttatactgaaTaaaaaaaaaaaagaaaatac	3	2	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108222727	A	A	108222727	1	1	149	0	1	0	0	0	0	0	0	0	14118	1421	49	5		5	SEC63	6	108222727	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	58766555	108222727	62892340	129	128611											
MICAL1	64780	broad.mit.edu	37	chr6	109771050	109771050	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctgtcagcacccacctctCaggaactgccaggccttttc	7	17	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109771050	T	T	109771050	1	4	149	0	1	0	0	0	0	0	0	0	9662	841	29	4		4	MICAL1	6	109771050	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	1548323	109771050	61344017	130	128612											
FBXO30	84085	broad.mit.edu	37	chr6	146126546	146126546	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctaagttgtgctgccacCgcaagtgagctggaaggttt	12	10	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146126546	A	A	146126546	2	1	149	1	0	0	0	0	0	0	0	1	5797	639	23	1		1	FBXO30	6	146126546	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	36355496	146126546	24988521	131	128613											
AKAP12	9590	broad.mit.edu	37	chr6	151670162	151670162	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggagggagcagcaggggcTggcgaccacaaggaccccag	19	11	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151670162	G	G	151670162	2	3	149	1	0	0	0	0	0	0	0	1	448	1567	55	5		5	AKAP12	6	151670162	Silent	SNP	T	TCGA-50-5044-01A-21D-1855-08	5543616	151670162	19444905	132	128614											
SYNE1	23345	broad.mit.edu	37	chr6	152560670	152560670	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacatcaatggtctcacctCtagaatgtactccagctcca	6	13	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152560670	G	G	152560670	3	3	149	1	0	0	0	0	1	0	0	0	15564	922	32	4	6557	4	SYNE1	6	152560670	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	890508	152560670	18554397	133	128615											
EIF3B	8662	broad.mit.edu	37	chr7	2409165	2409165	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgggtgcctgaagacaaaGatattccagccagggtaacc	11	10	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2409165	C	C	2409165	3	2	149	1	0	0	0	0	1	0	0	0	5053	942	33	4	1500	4	EIF3B	7	2409165	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08		2409165	156729498	134	128616											
MIOS	54468	broad.mit.edu	37	chr7	7625375	7625375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgattacagctaaataaccCgtatttgtgtgtcatgtttg	9	7	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7625375	A	A	7625375	3	1	149	1	0	0	0	0	1	0	0	0	9682	652	23	1	1771	1	MIOS	7	7625375	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	5216210	7625375	151513288	135	128617											
JAZF1	221895	broad.mit.edu	37	chr7	27872596	27872596	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactttatgccattcacattCtgtggagaagacaaaaatat	6	7	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27872596	T	T	27872596	1	4	149	0	1	0	0	0	0	0	0	0	8016	927	32	4		4	JAZF1	7	27872596	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	20247221	27872596	131266067	136	128618											
CCDC129	223075	broad.mit.edu	37	chr7	31683040	31683040	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaggtctggtactttgggtCagatactacctgggacagaa	12	8	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31683040	T	T	31683040	4	4	149	1	0	0	0	0	0	1	0	0	2790	827	29	4	2094	4	CCDC129	7	31683040	Nonsense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	3810444	31683040	127455623	137	128619											
PDE1C	5137	broad.mit.edu	37	chr7	31864463	31864463	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaacctcaccctcagcccTcaagcttccccactgacctc	4	22	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31864463	C	C	31864463	1	2	149	0	1	0	0	0	0	0	0	0	11729	1566	54	5		5	PDE1C	7	31864463	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	181423	31864463	127274200	138	128620											
DDC	1644	broad.mit.edu	37	chr7	50531022	50531022	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattccaccgtgcgagaacaGatggcaaagcgcaggacaaa	12	10	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50531022	A	A	50531022	2	1	149	1	0	0	0	0	0	0	0	1	4358	932	33	4		4	DDC	7	50531022	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	18666559	50531022	108607641	139	128621											
HIP1	3092	broad.mit.edu	37	chr7	75178196	75178196	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaacctcctacctctattCtggccgtggcagtttcaata	8	12	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75178196	T	T	75178196	3	4	149	1	0	0	0	0	1	0	0	0	7181	913	32	4	750	4	HIP1	7	75178196	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	24647174	75178196	83960467	140	128622											
ZNF655	79027	broad.mit.edu	37	chr7	99170993	99170993	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagctttcagtcaaacctCatgccttattcagcatcaca	4	12	5	0	rs141925358		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99170993	T	T	99170993	3	4	149	1	0	0	0	0	1	0	0	0	18195	838	29	4	1799	4	ZNF655	7	99170993	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	23992797	99170993	59967670	141	128623											
EPHB4	2050	broad.mit.edu	37	chr7	100420177	100420177	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtcctggaaggccaggTagaagccagccttgctgagc	14	12	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100420177	C	C	100420177	3	2	149	1	0	0	0	0	1	0	0	0	5219	1638	57	5	2495	5	EPHB4	7	100420177	Missense_Mutation	SNP	T	TCGA-50-5044-01A-21D-1855-08	1249184	100420177	58718486	142	128624											
PNPLA8	50640	broad.mit.edu	37	chr7	108119701	108119701	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtatgttaccgtgtttctCacatcactctcataacgtcc	6	12	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108119701	G	G	108119701	2	3	149	1	0	0	0	0	0	0	0	1	12266	813	29	4		4	PNPLA8	7	108119701	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	7699524	108119701	51018962	143	128625											
PPP1R3A	5506	broad.mit.edu	37	chr7	113519423	113519423	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatctgctgtgattgccCgggtggggattgcggtatgt	15	8	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113519423	A	A	113519423	3	1	149	1	0	0	0	0	1	0	0	0	12472	652	23	1	1648	1	PPP1R3A	7	113519423	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	5399722	113519423	45619240	144	128626											
RBM28	55131	broad.mit.edu	37	chr7	127957970	127957970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctggtttcctgcaagtGgtcctaagggaacaagtctc	12	9	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127957970	T	T	127957970	1	4	149	0	1	0	0	0	0	0	0	0	13236	1363	47	2		2	RBM28	7	127957970	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	14438547	127957970	31180693	145	128627											
METTL2B	55798	broad.mit.edu	37	chr7	128138084	128138084	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactataattccctgtgtctCcacaggatgcagaaggctat	8	10	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128138084	T	T	128138084	1	4	149	0	1	0	0	0	0	0	0	0	9593	870	30	4		4	METTL2B	7	128138084	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	180114	128138084	31000579	146	128628											
BRAF	673	broad.mit.edu	37	chr7	140453155	140453155	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactgtagctagaccaaaatCacctatttttactgtgaggt	7	9	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140453155	G	G	140453155	3	3	149	1	0	0	0	0	1	0	0	0	1505	826	29	4	536	4	BRAF	7	140453155	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	12315071	140453155	18685508	147	128629											
INSIG1	3638	broad.mit.edu	37	chr7	155094107	155094107	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgctgatcacgcagtttctCgtgtataatggtgtctatca	9	9	4	1	rs139463395		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155094107	A	A	155094107	2	1	149	1	0	0	0	0	0	0	0	1	7835	871	31	3		3	INSIG1	7	155094107	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	14640952	155094107	4044556	148	128630											
ESYT2	57488	broad.mit.edu	37	chr7	158590691	158590691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaggtgggtgtttgctcccCgcacggctggttctatagtt	13	9	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158590691	A	A	158590691	3	1	149	1	0	0	0	0	1	0	0	0	5307	652	23	1	2168	1	ESYT2	7	158590691	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	3496584	158590691	547972	149	128631											
TNKS	8658	broad.mit.edu	37	chr8	9618932	9618932	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaagaattttcttaatttGaatggtactcgtagcattga	7	5	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9618932	C	C	9618932	1	2	149	0	1	0	0	0	0	0	0	0	16442	1305	45	4		4	TNKS	8	9618932	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08		9618932	136745090	150	128632											
PSD3	23362	broad.mit.edu	37	chr8	18662370	18662370	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcagtgctccccatttcaGaatgagcttctagccgtgtt	8	11	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18662370	C	C	18662370	3	2	149	1	0	0	0	0	1	0	0	0	12754	942	33	4	1518	4	PSD3	8	18662370	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	9043438	18662370	127701652	151	128633											
SLC20A2	6575	broad.mit.edu	37	chr8	42323224	42323224	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaaaaaaaaaaaaaaagTaacttgtaataaaacttact	4	4	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42323224	A	A	42323224	1	1	149	0	1	0	0	0	0	0	0	0	14552	1653	57	5		5	SLC20A2	8	42323224	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	23660854	42323224	104040798	152	128634											
RUNX1T1	862	broad.mit.edu	37	chr8	93017287	93017287	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgacatgaaatgtttcctCatgccacaggtatgggaaaa	10	7	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93017287	T	T	93017287	1	4	149	0	1	0	0	0	0	0	0	0	13858	841	29	4		4	RUNX1T1	8	93017287	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	50694063	93017287	53346735	153	128635											
VPS13B	157680	broad.mit.edu	37	chr8	100155244	100155244	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcagggaaaagtgaagAtttgggaacagttcaggaga	13	4	3	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100155244	T	T	100155244	3	4	149	1	0	0	0	0	1	0	0	0	17317	333	12	5	1782	5	VPS13B	8	100155244	Missense_Mutation	SNP	A	TCGA-50-5044-01A-21D-1855-08	7137957	100155244	46208778	154	128636											
WDR67	93594	broad.mit.edu	37	chr8	124109655	124109655	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccatctggaatttcttcctGatagttttgatgctggttct	9	8	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124109655	C	C	124109655	3	2	149	1	0	0	0	0	1	0	0	0	17445	1290	45	4	827	4	WDR67	8	124109655	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	23954411	124109655	22254367	155	128637											
ST3GAL1	6482	broad.mit.edu	37	chr8	134475673	134475673	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaccttatcctgtttcactCtgatctttgcaggaaccggg	8	12	4	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134475673	G	G	134475673	3	3	149	1	0	0	0	0	1	0	0	0	15332	913	32	4	321	4	ST3GAL1	8	134475673	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	10366018	134475673	11888349	156	128638											
CBWD1	55871	broad.mit.edu	37	chr9	164038	164038	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacatagaagccactgcacCtgaaaatatataatattcat	4	8	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164038	G	G	164038	5	3	149	1	0	0	0	0	0	0	1	0	2738	695	24	4	801	4	CBWD1	9	164038	Splice_Site	SNP	C	TCGA-50-5044-01A-21D-1855-08		164038	141049393	157	128639											
TMEM8B	51754	broad.mit.edu	37	chr9	35847107	35847107	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtctgtgccttcactgtgtCttctacagacagagacagca	9	11	4	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35847107	G	G	35847107	1	3	149	0	1	0	0	0	0	0	0	0	16338	913	32	4		4	TMEM8B	9	35847107	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	35683069	35847107	105366324	158	128640											
TLE1	7088	broad.mit.edu	37	chr9	84235268	84235268	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtattatgtttaaggacatgGaattatcactaagatcttag	8	4	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84235268	A	A	84235268	1	1	149	0	1	0	0	0	0	0	0	0	16061	1189	41	4		4	TLE1	9	84235268	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	48388161	84235268	56978163	159	128641											
NAA35	60560	broad.mit.edu	37	chr9	88557126	88557126	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcaggatgggagctcagtAtgccagaaaaaatggagaaa	12	5	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88557126	G	G	88557126	3	3	149	1	0	0	0	0	1	0	0	0	10217	449	16	5	54	5	NAA35	9	88557126	Missense_Mutation	SNP	A	TCGA-50-5044-01A-21D-1855-08	4321858	88557126	52656305	160	128642											
GADD45G	10912	broad.mit.edu	37	chr9	92220654	92220654	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcgacatcgcgctgcagatCcattttacgctgatccaggc	11	13	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92220654	T	T	92220654	2	4	149	1	0	0	0	0	0	0	0	1	6243	845	30	4		4	GADD45G	9	92220654	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	3663528	92220654	48992777	161	128643											
GRIN3A	116443	broad.mit.edu	37	chr9	104390585	104390585	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctggaacattgtaccttctCatatattcatgcatctctgg	7	10	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104390585	G	G	104390585	3	3	149	1	0	0	0	0	1	0	0	0	6849	826	29	4	920	4	GRIN3A	9	104390585	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	12169931	104390585	36822846	162	128644											
OR2K2	26248	broad.mit.edu	37	chr9	114090198	114090198	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacacgtgaagtgatcgatGagattcccacagaggggtat	12	8	1	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114090198	A	A	114090198	2	1	149	1	0	0	0	0	0	0	0	1	11099	1277	45	4		4	OR2K2	9	114090198	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	9699613	114090198	27123233	163	128645											
ORM1	5004	broad.mit.edu	37	chr9	117092989	117092989	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctttaatctccaccagactCttgccccgggactgtgatgg	10	13	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117092989	G	G	117092989	1	3	149	0	1	0	0	0	0	0	0	0	11361	928	32	4		4	ORM1	9	117092989	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	3002791	117092989	24120442	164	128646											
PSMD5	5711	broad.mit.edu	37	chr9	123583051	123583051	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatggcacaggctctggctCactgttaagtactcaagtgt	11	9	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123583051	T	T	123583051	1	4	149	0	1	0	0	0	0	0	0	0	12807	841	29	4		4	PSMD5	9	123583051	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	6490062	123583051	17630380	165	128647											
SLC25A25	114789	broad.mit.edu	37	chr9	130854058	130854058	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagaaccccaggcccgtcctCccagcagctgtgtagccaga	11	16	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130854058	T	T	130854058	1	4	149	0	1	0	0	0	0	0	0	0	14602	870	30	4		4	SLC25A25	9	130854058	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	7271007	130854058	10359373	166	128648											
NUP188	23511	broad.mit.edu	37	chr9	131761475	131761475	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttaggttctgtggatgaaatCcttggacccttgacggagat	12	7	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131761475	A	A	131761475	2	1	149	1	0	0	0	0	0	0	0	1	10853	845	30	3		3	NUP188	9	131761475	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	907417	131761475	9451956	167	128649											
NUP214	8021	broad.mit.edu	37	chr9	134006218	134006218	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggaactgtggtccagtatCttcctgtaagttcttatctt	8	8	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134006218	T	T	134006218	3	4	149	1	0	0	0	0	1	0	0	0	10857	913	32	4	676	4	NUP214	9	134006218	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	2244743	134006218	7207213	168	128650											
RPL7A	6130	broad.mit.edu	37	chr9	136215119	136215119	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggtgagtgagctgtagttCcgtggcactatagccaggtt	14	7	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136215119	T	T	136215119	1	4	149	0	1	0	0	0	0	0	0	0	13711	870	30	4		4	RPL7A	9	136215119	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	2208901	136215119	4998312	169	128651											
DIP2C	22982	broad.mit.edu	37	chr10	410390	410390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggcgttgtgcctgcgccCgctgaccaccatgaggccat	13	15	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	410390	A	A	410390	3	1	149	1	0	0	0	0	1	0	0	0	4569	652	23	1	2341	1	DIP2C	10	410390	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08		410390	135124357	170	128652											
MARCH8	220972	broad.mit.edu	37	chr10	45956749	45956749	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcgcagcagcgcgtgtcgGagctcttgatccactgctgc	13	14	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45956749	A	A	45956749	3	1	149	1	0	0	0	0	1	0	0	0	9399	1174	41	4	534	4	MARCH8	10	45956749	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	45546359	45956749	89577998	171	128653											
PCDH15	65217	broad.mit.edu	37	chr10	56367743	56367743	+	Intron	DEL	C	-	-													cgcactttggaaaggctttgCctacatcattttggttattg							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56367743	-	-	56367743	6	5	149	0	1	1	0	1	0	0	0	0	11605	754	26	0		0	PCDH15	10	56367743	Intron	DEL	C	TCGA-50-5044-01A-21D-1855-08	10410994	56367743	79167004	172	128654											
HKDC1	80201	broad.mit.edu	37	chr10	70992714	70992714	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcagggaaggcggtggcatCcgtgtgtggggaaaccacac	17	10	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70992714	T	T	70992714	1	4	149	0	1	0	0	0	0	0	0	0	7260	870	30	4		4	HKDC1	10	70992714	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	14624971	70992714	64542033	173	128655											
AIFM2	84883	broad.mit.edu	37	chr10	71876359	71876359	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaggcacaggggaagccCggctgggcacctgctcacca	15	13	1	0	rs2310990	by1000genomes	TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71876359	A	A	71876359	1	1	149	0	1	0	0	0	0	0	0	0	427	667	23	1		1	AIFM2	10	71876359	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	883645	71876359	63658388	174	128656											
KIAA0913	23053	broad.mit.edu	37	chr10	75555537	75555537	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaagcctgggcaacatggcGaaaccccgtctctaccaaaa	8	14	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75555537	A	A	75555537	1	1	149	0	1	0	0	0	0	0	0	0	8270	1073	37	4		4	KIAA0913	10	75555537	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	3679178	75555537	59979210	175	128657											
TNKS2	80351	broad.mit.edu	37	chr10	93579832	93579832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggactttttaaatgttaccCtcttcttaaaacaatctttg	4	8	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93579832	A	A	93579832	1	1	149	0	1	0	0	0	0	0	0	0	16444	696	24	2		2	TNKS2	10	93579832	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	18024295	93579832	41954915	176	128658											
RRP12	23223	broad.mit.edu	37	chr10	99118236	99118236	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcccttctttagagcactCtgctccctcatccccaccca	3	20	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99118236	G	G	99118236	1	3	149	0	1	0	0	0	0	0	0	0	13797	928	32	4		4	RRP12	10	99118236	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	5538404	99118236	36416511	177	128659											
ELOVL3	83401	broad.mit.edu	37	chr10	103988655	103988655	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taccaccacagcacagtgctCgtgtacacaagctttggata	8	12	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103988655	G	G	103988655	2	3	149	1	0	0	0	0	0	0	0	1	5117	871	31	4		4	ELOVL3	10	103988655	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	4870419	103988655	31546092	178	128660											
ACSL5	51703	broad.mit.edu	37	chr10	114136114	114136115	+	Intron	DNP	GG	TT	TT													ctggaggaaccacgagcgagGgaagaaggacagggactcgt							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	114136115	TT	TT	114136114	1	4	149	0	1	0	0	0	0	0	0	0	180	1232	43	2		2	ACSL5	10	114136114	Intron	DNP	GG	TCGA-50-5044-01A-21D-1855-08	10147459	114136114	21398633	179	128661											
DCLRE1A	9937	broad.mit.edu	37	chr10	115609962	115609962	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcatcactttgaagtggaGaataggagatttcacagtca	9	7	4	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115609962	C	C	115609962	3	2	149	1	0	0	0	0	1	0	0	0	4327	942	33	4	2252	4	DCLRE1A	10	115609962	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1473848	115609962	19924785	180	128662											
CYP2E1	1571	broad.mit.edu	37	chr10	135352459	135352459	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaactctgtgtcattccCcgctcatgagtgtgtggagg	11	10	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135352459	A	A	135352459	2	1	149	1	0	0	0	0	0	0	0	1	4203	610	22	2		2	CYP2E1	10	135352459	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	19742497	135352459	182288	181	128663											
B4GALNT4	338707	broad.mit.edu	37	chr11	373127	373127	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgagggacggtacgggggtGagggtgccccgggggagggg	26	7	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	373127	A	A	373127	1	1	149	0	1	0	0	0	0	0	0	0	1274	1305	45	4		4	B4GALNT4	11	373127	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08		373127	134633389	182	128664											
OR2AG2	338755	broad.mit.edu	37	chr11	6789444	6789444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagctccatagaacatccCgaccacaatcaggtgggaag	11	12	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6789444	A	A	6789444	3	1	149	1	0	0	0	0	1	0	0	0	11079	652	23	1	209	1	OR2AG2	11	6789444	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	6416317	6789444	128217072	183	128665											
SYT9	143425	broad.mit.edu	37	chr11	7335010	7335010	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttttatttccggttccCtacaatgaccttgaagcacg	8	10	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7335010	A	A	7335010	2	1	149	1	0	0	0	0	0	0	0	1	15600	668	24	2		2	SYT9	11	7335010	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	545566	7335010	127671506	184	128666											
MUC15	143662	broad.mit.edu	37	chr11	26584813	26584813	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattcctgtatttctattttCtacaggacaaaaaaaattta	3	6	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26584813	G	G	26584813	5	3	149	1	0	0	0	0	0	0	1	0	10066	927	32	4	318	4	MUC15	11	26584813	Splice_Site	SNP	C	TCGA-50-5044-01A-21D-1855-08	19249803	26584813	108421703	185	128667											
RCN1	5954	broad.mit.edu	37	chr11	32124824	32124824	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaataaccttcccttcTagcggatatgttttcccatg	5	13	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32124824	A	A	32124824	1	1	149	0	1	0	0	0	0	0	0	0	13287	1537	53	5		5	RCN1	11	32124824	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	5540011	32124824	102881692	186	128668											
HIPK3	10114	broad.mit.edu	37	chr11	33374837	33374837	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctacttccatacccatcatCagccaccctcagtagtgctg	5	16	4	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33374837	T	T	33374837	3	4	149	1	0	0	0	0	1	0	0	0	7185	838	29	4	3433	4	HIPK3	11	33374837	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1250013	33374837	101631679	187	128669											
C11orf74	119710	broad.mit.edu	37	chr11	36669602	36669620	+	Frame_Shift_Del	DEL	TAAGCACCAGCATTCCTTC	-	-													aggagaagtggagcaggatgTaagcaccagcattccttcct					rs148376199		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36669620	-	-	36669602	7	5	149	1	0	1	0	1	0	0	0	0	1674	1638	57	0	409	0	C11orf74	11	36669602	Frame_Shift_Del	DEL	TAAGCACCAGCATTCCTTC	TCGA-50-5044-01A-21D-1855-08	3294765	36669602	98336914	188	128670											
OR4B1	119765	broad.mit.edu	37	chr11	48238562	48238562	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagctgcctgtccttggtGgagatcagttattcctccac	9	12	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48238562	T	T	48238562	2	4	149	1	0	0	0	0	0	0	0	1	11138	1335	47	2		2	OR4B1	11	48238562	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	11568960	48238562	86767954	189	128671											
SLC43A3	29015	broad.mit.edu	37	chr11	57176843	57176843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagaagcctggcctctgGgggctgtcggccgcttgtcc	15	13	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57176843	T	T	57176843	1	4	149	0	1	0	0	0	0	0	0	0	14748	1247	43	2		2	SLC43A3	11	57176843	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	8938281	57176843	77829673	190	128672											
CPSF7	79869	broad.mit.edu	37	chr11	61178661	61178661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttggtgtcttctgatattTgcctaaactattcctctatt	5	8	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61178661	A	A	61178661	1	1	149	0	1	0	0	0	0	0	0	0	3862	1827	63	5		5	CPSF7	11	61178661	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	4001818	61178661	73827855	191	128673											
C11orf85	283129	broad.mit.edu	37	chr11	64722333	64722333	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaagctctggagagagtaGactctactagggcaaaaata	12	6	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64722333	C	C	64722333	1	2	149	0	1	0	0	0	0	0	0	0	1680	957	33	4		4	C11orf85	11	64722333	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	3543672	64722333	70284183	192	128674											
KDM2A	22992	broad.mit.edu	37	chr11	67021784	67021784	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccacatgcccctcctgtctCgactcgacctcagtcactgc	7	19	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67021784	A	A	67021784	2	1	149	1	0	0	0	0	0	0	0	1	8194	876	31	3		3	KDM2A	11	67021784	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	2299451	67021784	67984732	193	128675											
RNF169	254225	broad.mit.edu	37	chr11	74546756	74546756	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagcgttctgtcagccctGagagcaatgacagcatctcc	10	13	3	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74546756	C	C	74546756	3	2	149	1	0	0	0	0	1	0	0	0	13571	1291	45	4	1130	4	RNF169	11	74546756	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	7524972	74546756	60459760	194	128676											
GRIA4	2893	broad.mit.edu	37	chr11	105623619	105623619	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaatgattcagtgattttTatttttttaattttctagaa	4	4	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105623619	A	A	105623619	1	1	149	0	1	0	0	0	0	0	0	0	6836	1769	61	5		5	GRIA4	11	105623619	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	31076863	105623619	29382897	195	128677											
ATM	472	broad.mit.edu	37	chr11	108139268	108139268	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctttagggcagctgatattCggaggaaattgttaatgtta	11	5	0	1	rs55723361		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108139268	A	A	108139268	2	1	149	1	0	0	0	0	0	0	0	1	1113	875	31	3		3	ATM	11	108139268	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	2515649	108139268	26867248	196	128678											
CADM1	23705	broad.mit.edu	37	chr11	115080671	115080671	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacacccctcttccctaccaGatttcaaaggtgaggttaaa	7	12	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115080671	C	C	115080671	1	2	149	0	1	0	0	0	0	0	0	0	2592	957	33	4		4	CADM1	11	115080671	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	6941403	115080671	19925845	197	128679											
HMBS	3145	broad.mit.edu	37	chr11	118959906	118959906	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttccctgaagggattcactCaggctctttctgtccggcag	10	13	4	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118959906	T	T	118959906	1	4	149	0	1	0	0	0	0	0	0	0	7286	841	29	4		4	HMBS	11	118959906	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	3879235	118959906	16046610	198	128680											
C2CD2L	9854	broad.mit.edu	37	chr11	118986936	118986936	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttcaaatccaaacccaaGgccaatggtaaccccagccc	5	17	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118986936	A	A	118986936	2	1	149	1	0	0	0	0	0	0	0	1	2175	991	35	4		4	C2CD2L	11	118986936	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	27030	118986936	16019580	199	128681											
ABCG4	64137	broad.mit.edu	37	chr11	119029106	119029106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttgggctgtaggatccCagcagctgaaatgggaatgg	14	8	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119029106	A	A	119029106	1	1	149	0	1	0	0	0	0	0	0	0	70	609	21	2		2	ABCG4	11	119029106	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	42170	119029106	15977410	200	128682											
SORL1	6653	broad.mit.edu	37	chr11	121425785	121425785	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttactaacgtaaaacatctCatcccttgccagtcctgcca	4	14	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121425785	A	A	121425785	1	1	149	0	1	0	0	0	0	0	0	0	15048	841	29	3		3	SORL1	11	121425785	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	2396679	121425785	13580731	201	128683											
GLB1L2	89944	broad.mit.edu	37	chr11	134240907	134240907	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttctgtacgcagccaatCaagtctgaaaagcccatcaa	6	13	5	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134240907	G	G	134240907	3	3	149	1	0	0	0	0	1	0	0	0	6493	816	29	4	1271	4	GLB1L2	11	134240907	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	12815122	134240907	765609	202	128684											
CCDC77	84318	broad.mit.edu	37	chr12	549769	549769	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgttaatgttttttgtcCctttgacttgtagtccctaa	8	7	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	549769	T	T	549769	1	4	149	0	1	0	0	0	0	0	0	0	2879	638	22	4		4	CCDC77	12	549769	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08		549769	133302126	203	128685											
NCAPD2	9918	broad.mit.edu	37	chr12	6626081	6626081	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaactggaagcagcagccCgagacaccagagaccagttc	10	13	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6626081	A	A	6626081	2	1	149	1	0	0	0	0	0	0	0	1	10300	644	23	1		1	NCAPD2	12	6626081	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	6076312	6626081	127225814	204	128686											
TAS2R7	50837	broad.mit.edu	37	chr12	10954612	10954612	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggagcagcgttgccaggttGagaaataacttggtagaagc	15	6	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10954612	A	A	10954612	2	1	149	1	0	0	0	0	0	0	0	1	15705	1277	45	4		4	TAS2R7	12	10954612	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	4328531	10954612	122897283	205	128687											
FGD4	121512	broad.mit.edu	37	chr12	32793194	32793194	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcacctgcttttaatgtctGatgtcttttctttaggacgt	7	8	4	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32793194	C	C	32793194	1	2	149	0	1	0	0	0	0	0	0	0	5892	1305	45	4		4	FGD4	12	32793194	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	21838582	32793194	101058701	206	128688											
MAP3K12	7786	broad.mit.edu	37	chr12	53877928	53877928	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtggattgactcagccctCtaagagccaatctcttcagt	9	11	4	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53877928	G	G	53877928	1	3	149	0	1	0	0	0	0	0	0	0	9338	928	32	4		4	MAP3K12	12	53877928	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	21084734	53877928	79973967	207	128689											
HOXC6	3223	broad.mit.edu	37	chr12	54422532	54422532	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtatgactatggatctaattCcttttaccaggagaaagaca	8	7	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54422532	G	G	54422532	3	3	149	1	0	0	0	0	1	0	0	0	7382	855	30	4	229	4	HOXC6	12	54422532	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	544604	54422532	79429363	208	128690											
BLOC1S1	2647	broad.mit.edu	37	chr12	56113410	56113410	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagcccctgttccctccccCaaccctatccctcctacctc	2	24	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56113410	A	A	56113410	1	1	149	0	1	0	0	0	0	0	0	0	1454	609	21	2		2	BLOC1S1	12	56113410	3'UTR	SNP	C	TCGA-50-5044-01A-21D-1855-08	1690878	56113410	77738485	209	128691											
PAN2	9924	broad.mit.edu	37	chr12	56716282	56716282	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgccctatggaaatacaaaGaaagcctgtggcgatacaaa	9	9	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56716282	C	C	56716282	1	2	149	0	1	0	0	0	0	0	0	0	11508	957	33	4		4	PAN2	12	56716282	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	602872	56716282	77135613	210	128692											
TIMELESS	8914	broad.mit.edu	37	chr12	56824639	56824639	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatgcaactccactatgttCccactccagatgtaagaata	5	12	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56824639	A	A	56824639	1	1	149	0	1	0	0	0	0	0	0	0	16027	870	30	3		3	TIMELESS	12	56824639	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	108357	56824639	77027256	211	128693											
TIMELESS	8914	broad.mit.edu	37	chr12	56826270	56826270	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgctgaggtgaatcgcccaGaggagctggtcatgggcact	15	11	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56826270	A	A	56826270	2	1	149	1	0	0	0	0	0	0	0	1	16027	929	33	4		4	TIMELESS	12	56826270	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	1631	56826270	77025625	212	128694											
MARS	4141	broad.mit.edu	37	chr12	57906273	57906273	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaataattaaaatgagaactCaacctagagaaacgaacaag	6	6	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57906273	G	G	57906273	1	3	149	0	1	0	0	0	0	0	0	0	9408	841	29	4		4	MARS	12	57906273	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	1080003	57906273	75945622	213	128695											
DCTN2	10540	broad.mit.edu	37	chr12	57927159	57927159	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaggaatacgatcctgctCtactctgcctgccactcacc	9	15	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57927159	G	G	57927159	1	3	149	0	1	0	0	0	0	0	0	0	4340	928	32	4		4	DCTN2	12	57927159	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	20886	57927159	75924736	214	128696											
AVIL	10677	broad.mit.edu	37	chr12	58201498	58201498	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggaccagctccaggttctCaattctccagacctgggcat	10	13	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58201498	A	A	58201498	4	1	149	1	0	0	0	0	0	1	0	0	1232	835	29	3	1288	3	AVIL	12	58201498	Nonsense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	274339	58201498	75650397	215	128697											
WIF1	11197	broad.mit.edu	37	chr12	65449034	65449034	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagagtatttcctgagctttCctttttcaacagaattacat	5	8	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65449034	T	T	65449034	1	4	149	0	1	0	0	0	0	0	0	0	17493	870	30	4		4	WIF1	12	65449034	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	7247536	65449034	68402861	216	128698											
TMTC3	160418	broad.mit.edu	37	chr12	88568455	88568455	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccttaaaaacattccacaGaaattgggattgggagtctg	9	7	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88568455	A	A	88568455	3	1	149	1	0	0	0	0	1	0	0	0	16385	942	33	4	1301	4	TMTC3	12	88568455	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	23119421	88568455	45283440	217	128699											
APAF1	317	broad.mit.edu	37	chr12	99056294	99056294	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaagcttttgacagtcaGtgtcagattcttcttacaac	7	8	4	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99056294	A	A	99056294	2	1	149	1	0	0	0	0	0	0	0	1	757	1020	36	4		4	APAF1	12	99056294	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	10487839	99056294	34795601	218	128700											
ACTR6	64431	broad.mit.edu	37	chr12	100617685	100617685	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgtctgtgaagagaaatttGatatttaagcaacatttttg	9	4	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100617685	C	C	100617685	3	2	149	1	0	0	0	0	1	0	0	0	216	1290	45	4	1225	4	ACTR6	12	100617685	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1561391	100617685	33234210	219	128701											
UTP20	27340	broad.mit.edu	37	chr12	101761655	101761655	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagctgctgcatctgagtctGaagacttccaagatcaagtc	9	10	3	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101761655	A	A	101761655	2	1	149	1	0	0	0	0	0	0	0	1	17226	1277	45	4		4	UTP20	12	101761655	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	1143970	101761655	32090240	220	128702											
NUAK1	9891	broad.mit.edu	37	chr12	106461075	106461075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggggatgctgctgccCatcacatcattactgtccaa	12	11	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106461075	A	A	106461075	3	1	149	1	0	0	0	0	1	0	0	0	10807	594	21	2	498	2	NUAK1	12	106461075	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	4699420	106461075	27390820	221	128703											
ALKBH2	121642	broad.mit.edu	37	chr12	109530600	109530600	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctgtccatcctgtcccCacaggaaagaagggacgtca	10	12	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109530600	A	A	109530600	1	1	149	0	1	0	0	0	0	0	0	0	527	609	21	2		2	ALKBH2	12	109530600	5'UTR	SNP	C	TCGA-50-5044-01A-21D-1855-08	3069525	109530600	24321295	222	128704											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123687489	123687489	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaaaatgagtctatgtcaGagggactagacatactaggc	12	6	2	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123687489	A	A	123687489	3	1	149	1	0	0	0	0	1	0	0	0	9822	942	33	4	2148	4	MPHOSPH9	12	123687489	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	14156889	123687489	10164406	223	128705											
LATS2	26524	broad.mit.edu	37	chr13	21549028	21549028	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacacgtacacaggctggCagccttcagtctgatccacc	8	15	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21549028	T	T	21549028	3	4	149	1	0	0	0	0	1	0	0	0	8719	710	25	4	22	4	LATS2	13	21549028	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08		21549028	93620850	224	128706											
ATP8A2	51761	broad.mit.edu	37	chr13	26151272	26151272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcggctttactgtaaagGggctgtaagtaccggagaag	13	7	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26151272	T	T	26151272	3	4	149	1	0	0	0	0	1	0	0	0	1197	1232	43	2	1856	2	ATP8A2	13	26151272	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	4602244	26151272	89018606	225	128707											
MTUS2	23281	broad.mit.edu	37	chr13	30075296	30075296	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacagcagaacgaagacctCaaagcaaggattgaccaaaa	8	10	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30075296	G	G	30075296	2	3	149	1	0	0	0	0	0	0	0	1	10060	813	29	4		4	MTUS2	13	30075296	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	3924024	30075296	85094582	226	128708											
LMO7	4008	broad.mit.edu	37	chr13	76381854	76381854	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaaatccatatgttctcCgagcttttgaagactttaga	7	8	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76381854	A	A	76381854	2	1	149	1	0	0	0	0	0	0	0	1	8929	644	23	1		1	LMO7	13	76381854	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	46306558	76381854	38788024	227	128709											
TM9SF2	9375	broad.mit.edu	37	chr13	100153956	100153956	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcggttcctggcccgcgccgGagcggcgctttctacctgcc	14	17	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100153956	A	A	100153956	2	1	149	1	0	0	0	0	0	0	0	1	16101	1161	41	4		4	TM9SF2	13	100153956	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	23772102	100153956	15015922	228	128710											
NALCN	259232	broad.mit.edu	37	chr13	101997671	101997671	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgctaagtcccagatcttCaaggtccatgcatttaaatc	6	12	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101997671	G	G	101997671	3	3	149	1	0	0	0	0	1	0	0	0	10242	835	29	4	4623	4	NALCN	13	101997671	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1843715	101997671	13172207	229	128711											
FAM155A	728215	broad.mit.edu	37	chr13	108518943	108518943	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatccaagcacccctggtcAtattttgggaacgcacagcc	8	14	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108518943	G	G	108518943	3	3	149	1	0	0	0	0	1	0	0	0	5511	217	8	5	1386	5	FAM155A	13	108518943	Missense_Mutation	SNP	A	TCGA-50-5044-01A-21D-1855-08	6521272	108518943	6650935	230	128712											
SLC7A7	9056	broad.mit.edu	37	chr14	23242848	23242848	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgggatcccgttgcttggGcatctctcctccatcttcca	8	14	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23242848	C	C	23242848	3	2	149	1	0	0	0	0	1	0	0	0	14817	1203	42	4	32	4	SLC7A7	14	23242848	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08		23242848	84106692	231	128713											
MYH6	4624	broad.mit.edu	37	chr14	23868018	23868018	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtacagggccacaacagtctCgttgagaggatccttgtttt	11	9	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23868018	G	G	23868018	3	3	149	1	0	0	0	0	1	0	0	0	10132	893	31	4	4109	4	MYH6	14	23868018	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	625170	23868018	83481522	232	128714											
RNF31	55072	broad.mit.edu	37	chr14	24619469	24619469	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggggttggggttgggaactGagggtccccaaggaactgga	19	6	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24619469	C	C	24619469	3	2	149	1	0	0	0	0	1	0	0	0	13598	1291	45	4	1035	4	RNF31	14	24619469	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	751451	24619469	82730071	233	128715											
GMPR2	51292	broad.mit.edu	37	chr14	24702538	24702538	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacgcagtacccttaagtctCgaagtgaggtgagcaagctt	11	9	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24702538	A	A	24702538	2	1	149	1	0	0	0	0	0	0	0	1	6561	876	31	3		3	GMPR2	14	24702538	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	83069	24702538	82647002	234	128716											
HECTD1	25831	broad.mit.edu	37	chr14	31576369	31576369	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcgtgatcctttcaagctCatcactatcctgtggaaatg	7	10	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31576369	T	T	31576369	3	4	149	1	0	0	0	0	1	0	0	0	7106	835	29	4	1147	4	HECTD1	14	31576369	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	6873831	31576369	75773171	235	128717											
AKAP6	9472	broad.mit.edu	37	chr14	33242896	33242896	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttgcagtccctctgtcgtGaaatcaagcaacgacgtcga	10	11	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33242896	T	T	33242896	4	4	149	1	0	0	0	0	0	1	0	0	455	1291	45	3	3427	3	AKAP6	14	33242896	Nonsense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1666527	33242896	74106644	236	128718											
MIPOL1	145282	broad.mit.edu	37	chr14	37754408	37754408	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgattgattgatattaattCagtttattgagtagtcctta	7	3	1	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37754408	T	T	37754408	1	4	149	0	1	0	0	0	0	0	0	0	9686	841	29	4		4	MIPOL1	14	37754408	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	4511512	37754408	69595132	237	128719											
SNAPC1	6617	broad.mit.edu	37	chr14	62229293	62229293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggagaaacatgaagttcGggactatcttctggtgggtg	14	6	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62229293	T	T	62229293	3	4	149	1	0	0	0	0	1	0	0	0	14948	1116	39	1	117	1	SNAPC1	14	62229293	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	24474885	62229293	45120247	238	128720											
SYNE2	23224	broad.mit.edu	37	chr14	64630120	64630120	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catccctttttcttctgcagGagctgcagcatgatgtgcag	10	11	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64630120	C	C	64630120	3	2	149	1	0	0	0	0	1	0	0	0	15565	1188	41	4	16650	4	SYNE2	14	64630120	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	2400827	64630120	42719420	239	128721											
DCAF5	8816	broad.mit.edu	37	chr14	69520961	69520961	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcactgtcatcagactgggtCctgggacagttgccagaccc	11	13	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69520961	T	T	69520961	2	4	149	1	0	0	0	0	0	0	0	1	4306	854	30	4		4	DCAF5	14	69520961	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	4890841	69520961	37828579	240	128722											
TMED10	10972	broad.mit.edu	37	chr14	75602437	75602437	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcatttatgggtcacttaaGaagtaagagtcgccttcccc	8	11	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75602437	A	A	75602437	1	1	149	0	1	0	0	0	0	0	0	0	16126	957	33	4		4	TMED10	14	75602437	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	6081476	75602437	31747103	241	128723											
CLMN	79789	broad.mit.edu	37	chr14	95669099	95669099	+	Intron	SNP	G	A	A													atcgctattttatggagcaaGaagctgagcttcagacaaag							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95669099	A	A	95669099	1	1	149	0	1	0	0	0	0	0	0	0	3574	957	33	4		4	CLMN	14	95669099	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	20066662	95669099	11680441	242	128724	555	2									
CLMN	79789	broad.mit.edu	37	chr14	95669105	95669105	+	Intron	SNP	G	C	C													attttatggagcaagaagctGagcttcagacaaagaactat							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95669105	C	C	95669105	1	2	149	0	1	0	0	0	0	0	0	0	3574	1305	45	4		4	CLMN	14	95669105	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	6	95669105	11680435	243	128725	555	2									
INF2	64423	broad.mit.edu	37	chr14	105179226	105179226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatcgagcagaagcaacGggagctggccgactacctgt	14	12	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105179226	T	T	105179226	3	4	149	1	0	0	0	0	1	0	0	0	7804	1116	39	1	2742	1	INF2	14	105179226	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	9510121	105179226	2170314	244	128726											
TUBGCP5	114791	broad.mit.edu	37	chr15	22840267	22840267	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgcacattattccatactGtcacttcttctgtgtctgtc	6	11	4	0	rs140377004	by1000genomes	TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22840267	C	C	22840267	2	2	149	1	0	0	0	0	0	0	0	1	16895	1364	48	4		4	TUBGCP5	15	22840267	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08		22840267	79691125	245	128727											
FRMD5	84978	broad.mit.edu	37	chr15	44355865	44355865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctagtatgattccaccCatagcaagttccacagcatc	6	12	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44355865	A	A	44355865	1	1	149	0	1	0	0	0	0	0	0	0	6113	609	21	2		2	FRMD5	15	44355865	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	21515598	44355865	58175527	246	128728											
TCF12	6938	broad.mit.edu	37	chr15	57535855	57535855	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttgtgaaaaatcatttaGattttgactataagaaagtg	7	2	1	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57535855	C	C	57535855	1	2	149	0	1	0	0	0	0	0	0	0	15809	957	33	4		4	TCF12	15	57535855	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	13179990	57535855	44995537	247	128729											
ZNF609	23060	broad.mit.edu	37	chr15	64792238	64792238	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtgcaggggtggatacagGagctgtggagccacttggga	18	6	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64792238	A	A	64792238	3	1	149	1	0	0	0	0	1	0	0	0	18162	1174	41	4	622	4	ZNF609	15	64792238	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	7256383	64792238	37739154	248	128730											
DIS3L	115752	broad.mit.edu	37	chr15	66624421	66624421	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagtgtagaacacaaactGtacattagatataatttatt	5	4	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66624421	A	A	66624421	1	1	149	0	1	0	0	0	0	0	0	0	4576	1392	48	4		4	DIS3L	15	66624421	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	1832183	66624421	35906971	249	128731											
IL16	3603	broad.mit.edu	37	chr15	81589336	81589336	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggagaagccctagtgcctCtgccggctgcccaggacctg	14	14	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81589336	T	T	81589336	3	4	149	1	0	0	0	0	1	0	0	0	7703	913	32	4	2016	4	IL16	15	81589336	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	14964915	81589336	20942056	250	128732											
HOMER2	9455	broad.mit.edu	37	chr15	83520967	83520967	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgtgttcttctccttctctCtgttgatctcactgcattgt	7	12	5	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83520967	T	T	83520967	3	4	149	1	0	0	0	0	1	0	0	0	7346	913	32	4	354	4	HOMER2	15	83520967	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1931631	83520967	19010425	251	128733											
FANCI	55215	broad.mit.edu	37	chr15	89836071	89836071	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attactaatagaatgattaaGagtgagctggaagactttga	10	3	0	6			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89836071	C	C	89836071	3	2	149	1	0	0	0	0	1	0	0	0	5726	933	33	4	2223	4	FANCI	15	89836071	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	6315104	89836071	12695321	252	128734											
BLM	641	broad.mit.edu	37	chr15	91310173	91310173	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctgacaggtgataagactGactcagaagctacaaatatt	8	7	2	5			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91310173	A	A	91310173	3	1	149	1	0	0	0	0	1	0	0	0	1451	1290	45	4	2261	4	BLM	15	91310173	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1474102	91310173	11221219	253	128735											
TTC23	64927	broad.mit.edu	37	chr15	99740100	99740100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgggcctagaacagctttGgtagccaggaccttgtagct	12	9	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99740100	T	T	99740100	1	4	149	0	1	0	0	0	0	0	0	0	16816	1363	47	2		2	TTC23	15	99740100	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	8429927	99740100	2791292	254	128736											
TARSL2	123283	broad.mit.edu	37	chr15	102211689	102211689	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcacattcaatcactcacCtaacatatgtgagattaaat	3	9	4	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102211689	T	T	102211689	3	4	149	1	0	0	0	0	1	0	0	0	15680	695	24	4	461	4	TARSL2	15	102211689	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	2471589	102211689	319703	255	128737											
RAB40C	57799	broad.mit.edu	37	chr16	667165	667165	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggtctcgcgggcgctcgctCcaggagtggcgcgtcccctc	15	16	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	667165	G	G	667165	1	3	149	0	1	0	0	0	0	0	0	0	13050	870	30	4		4	RAB40C	16	667165	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08		667165	89687588	256	128738											
RHOT2	89941	broad.mit.edu	37	chr16	722071	722071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacactgtgcctgcctccCgcccacccccagcctggtga	8	19	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	722071	A	A	722071	1	1	149	0	1	0	0	0	0	0	0	0	13453	667	23	1		1	RHOT2	16	722071	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	54906	722071	89632682	257	128739											
DCI	1632	broad.mit.edu	37	chr16	2296868	2296868	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actagcacctaccgaggtcaGaatgacaccgcggaagctct	10	13	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2296868	A	A	2296868	2	1	149	1	0	0	0	0	0	0	0	1	4322	933	33	4		4	DCI	16	2296868	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	1574797	2296868	88057885	258	128740											
RNPS1	10921	broad.mit.edu	37	chr16	2305519	2305519	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcagggctgaataaagggtCtgaaagtcactgcggtcaca	14	8	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2305519	G	G	2305519	1	3	149	0	1	0	0	0	0	0	0	0	13622	928	32	4		4	RNPS1	16	2305519	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	8651	2305519	88049234	259	128741											
ABCA3	21	broad.mit.edu	37	chr16	2331082	2331082	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaaggcatccccagaagtGaggctctcctccccggtcag	10	15	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2331082	C	C	2331082	2	2	149	1	0	0	0	0	0	0	0	1	33	1277	45	4		4	ABCA3	16	2331082	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	25563	2331082	88023671	260	128742											
TFAP4	7023	broad.mit.edu	37	chr16	4312331	4312331	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggacagggcgcacctggatGaagcgcttgagctgtgtgtt	16	8	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4312331	A	A	4312331	2	1	149	1	0	0	0	0	0	0	0	1	15915	1281	45	4		4	TFAP4	16	4312331	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	1981249	4312331	86042422	261	128743			1	99		3	3	379	G		9.930408e-06
TFAP4	7023	broad.mit.edu	37	chr16	4312570	4312570	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctccgtctgtgtgggggatGagggtcttgagggactggaa	18	6	3	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4312570	T	T	4312570	2	4	149	1	0	0	0	0	0	0	0	1	15915	1277	45	3		3	TFAP4	16	4312570	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	239	4312570	86042183	262	128744			1	99		3	3	379	G		9.930408e-06
TFAP4	7023	broad.mit.edu	37	chr16	4312709	4312709	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatgttggcaaggctgccaGagaggacagggacaggctcg	17	8	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4312709	A	A	4312709	1	1	149	0	1	0	0	0	0	0	0	0	15915	957	33	4		4	TFAP4	16	4312709	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	139	4312709	86042044	263	128745			1	99		3	3	379	G		9.930408e-06
MGRN1	23295	broad.mit.edu	37	chr16	4715113	4715113	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccccagcagtggtggaagtGactggccacgcccacgtgct	13	14	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4715113	T	T	4715113	2	4	149	1	0	0	0	0	0	0	0	1	9652	1277	45	3		3	MGRN1	16	4715113	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	402404	4715113	85639640	264	128746											
SEC14L5	9717	broad.mit.edu	37	chr16	5056047	5056047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccttgggggagagagtGtggtgaggcttccatgtcca	15	8	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5056047	T	T	5056047	3	4	149	1	0	0	0	0	1	0	0	0	14098	1377	48	3	1477	3	SEC14L5	16	5056047	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	340934	5056047	85298706	265	128747											
CIITA	4261	broad.mit.edu	37	chr16	10996115	10996115	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagttgacactaaggcagGgactgtcaggaactggacct	14	8	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10996115	A	A	10996115	1	1	149	0	1	0	0	0	0	0	0	0	3459	1247	43	4		4	CIITA	16	10996115	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	5940068	10996115	79358638	266	128748											
BFAR	51283	broad.mit.edu	37	chr16	14756020	14756020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtttcttcagtttgaccCatgaactccttcagaatgtc	6	11	3	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14756020	A	A	14756020	1	1	149	0	1	0	0	0	0	0	0	0	1420	609	21	2		2	BFAR	16	14756020	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	3759905	14756020	75598733	267	128749											
UMOD	7369	broad.mit.edu	37	chr16	20348643	20348643	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttcattcatggtgtcacaGagatagacttcacagtgcag	9	8	4	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20348643	C	C	20348643	2	2	149	1	0	0	0	0	0	0	0	1	17105	929	33	4		4	UMOD	16	20348643	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	5592623	20348643	70006110	268	128750											
PDILT	204474	broad.mit.edu	37	chr16	20396261	20396261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgggcctgcttagctccCggaacctttcttgtgctcag	11	12	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20396261	A	A	20396261	1	1	149	0	1	0	0	0	0	0	0	0	11768	667	23	1		1	PDILT	16	20396261	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	47618	20396261	69958492	269	128751											
DNAH3	55567	broad.mit.edu	37	chr16	21051256	21051256	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccatcatggccactgtccGgaacaaggcctggaaaagaa	11	11	1	1	rs141534193	byFrequency	TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21051256	A	A	21051256	3	1	149	1	0	0	0	0	1	0	0	0	4643	1115	39	4	7821	4	DNAH3	16	21051256	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	654995	21051256	69303497	270	128752											
SLC5A11	115584	broad.mit.edu	37	chr16	24902236	24902236	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggactgaaggagaagtacttCttggccctggctagcaaccg	13	10	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24902236	G	G	24902236	3	3	149	1	0	0	0	0	1	0	0	0	14777	912	32	4	741	4	SLC5A11	16	24902236	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	3850980	24902236	65452517	271	128753											
AQP8	343	broad.mit.edu	37	chr16	25232933	25232933	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accccaggggctgggctagtCttcctctctgatggggctgc	14	13	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25232933	T	T	25232933	1	4	149	0	1	0	0	0	0	0	0	0	834	928	32	4		4	AQP8	16	25232933	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	330697	25232933	65121820	272	128754											
ITGAX	3687	broad.mit.edu	37	chr16	31374654	31374654	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggtgctgtctacctgtttCacggagtcttgggacccagc	14	11	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31374654	T	T	31374654	3	4	149	1	0	0	0	0	1	0	0	0	7959	826	29	4	1723	4	ITGAX	16	31374654	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	6141721	31374654	58980099	273	128755											
ITGAX	3687	broad.mit.edu	37	chr16	31383683	31383683	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttaccctccgctccccgcGacgcccgtcccccagagctg	8	23	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31383683	A	A	31383683	1	1	149	0	1	0	0	0	0	0	0	0	7959	1073	37	4		4	ITGAX	16	31383683	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	9029	31383683	58971070	274	128756											
ITGAD	3681	broad.mit.edu	37	chr16	31424391	31424391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccagtgttctgtcctccCcactactctgcccctcagga	7	17	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31424391	A	A	31424391	1	1	149	0	1	0	0	0	0	0	0	0	7954	638	22	2		2	ITGAD	16	31424391	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	40708	31424391	58930362	275	128757											
CES7	221223	broad.mit.edu	37	chr16	55905512	55905512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctgctagctagagccCgaagcacacagcaggcagcc	12	14	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55905512	A	A	55905512	1	1	149	0	1	0	0	0	0	0	0	0	3302	667	23	1		1	CES7	16	55905512	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	24481121	55905512	34449241	276	128758											
ACD	65057	broad.mit.edu	37	chr16	67691946	67691946	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtcctgggaaaaggcggCcgattcttgcagggcaaccc	14	13	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67691946	T	T	67691946	2	4	149	1	0	0	0	0	0	0	0	1	135	726	26	4		4	ACD	16	67691946	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	11786434	67691946	22662807	277	128759											
PDPR	55066	broad.mit.edu	37	chr16	70161209	70161209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggcatcctgagcactGccaggcacttgaccattgag	12	12	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70161209	T	T	70161209	3	4	149	1	0	0	0	0	1	0	0	0	11783	1319	46	3	280	3	PDPR	16	70161209	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	2469263	70161209	20193544	278	128760											
GLG1	2734	broad.mit.edu	37	chr16	74525014	74525014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtgttcaatctcccccCgacagcttaggatgatctca	8	12	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74525014	A	A	74525014	3	1	149	1	0	0	0	0	1	0	0	0	6500	652	23	1	2361	1	GLG1	16	74525014	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	4363805	74525014	15829739	279	128761											
ATMIN	23300	broad.mit.edu	37	chr16	81078195	81078195	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attctaacttcttaggccttGagatgtttgacacacagaca	7	9	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81078195	A	A	81078195	3	1	149	1	0	0	0	0	1	0	0	0	1114	1291	45	4	2106	4	ATMIN	16	81078195	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	6553181	81078195	9276558	280	128762											
ZC3H18	124245	broad.mit.edu	37	chr16	88666329	88666329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcgagattggaattctcGgatcccgagagatgtcagag	12	7	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88666329	T	T	88666329	3	4	149	1	0	0	0	0	1	0	0	0	17694	1116	39	1	1079	1	ZC3H18	16	88666329	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	7588134	88666329	1688424	281	128763											
WDR81	124997	broad.mit.edu	37	chr17	1640965	1640965	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagacaacggggttatcCgcctcctggcatagactgag	12	12	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1640965	T	T	1640965	3	4	149	1	0	0	0	0	1	0	0	0	17457	652	23	4	5912	4	WDR81	17	1640965	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08		1640965	79554245	282	128764											
USP6	9098	broad.mit.edu	37	chr17	5033835	5033835	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcagggacgggtggccaaTacccccaggcccttgcaccc	14	16	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5033835	A	A	5033835	1	1	149	0	1	0	0	0	0	0	0	0	17213	1421	49	5		5	USP6	17	5033835	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	3392870	5033835	76161375	283	128765											
ALOX15B	247	broad.mit.edu	37	chr17	7942594	7942594	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccactgcccctggacaatCtcggcaaggagttcactgcg	10	16	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7942594	T	T	7942594	3	4	149	1	0	0	0	0	1	0	0	0	539	913	32	4	123	4	ALOX15B	17	7942594	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	2908759	7942594	73252616	284	128766											
PER1	5187	broad.mit.edu	37	chr17	8045244	8045244	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatggctcggagccgctccCgatcctgcttcagcacagag	12	15	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8045244	A	A	8045244	3	1	149	1	0	0	0	0	1	0	0	0	11823	652	23	1	401	1	PER1	17	8045244	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	102650	8045244	73149966	285	128767											
SUPT6H	6830	broad.mit.edu	37	chr17	27016441	27016441	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttatgagtgggctaggaaGatggcagtggatgccctgga	16	6	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27016441	A	A	27016441	2	1	149	1	0	0	0	0	0	0	0	1	15518	933	33	4		4	SUPT6H	17	27016441	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	18971197	27016441	54178769	286	128768											
PCGF2	7703	broad.mit.edu	37	chr17	36895840	36895840	+	Missense_Mutation	SNP	T	A	A													ggtgccgtgccaagcccaccTgatgctcagcagcggccggg							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36895840	A	A	36895840	3	1	149	1	0	0	0	0	1	0	0	0	11669	1594	55	5	858	5	PCGF2	17	36895840	Missense_Mutation	SNP	T	TCGA-50-5044-01A-21D-1855-08	9879399	36895840	44299370	287	128769	556	2									
PCGF2	7703	broad.mit.edu	37	chr17	36895846	36895846	+	Missense_Mutation	SNP	T	C	C													gtgccaagcccacctgatgcTcagcagcggccgggttttat							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36895846	C	C	36895846	3	2	149	1	0	0	0	0	1	0	0	0	11669	1551	54	5	864	5	PCGF2	17	36895846	Missense_Mutation	SNP	T	TCGA-50-5044-01A-21D-1855-08	6	36895846	44299364	288	128770	556	2									
MED24	9862	broad.mit.edu	37	chr17	38187773	38187773	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttccagtagggcgggggtGaccaggggagctcatacttg	16	10	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38187773	A	A	38187773	1	1	149	0	1	0	0	0	0	0	0	0	9535	1305	45	4		4	MED24	17	38187773	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	1291927	38187773	43007437	289	128771											
KRT28	162605	broad.mit.edu	37	chr17	38953259	38953259	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggcgaaagtggctgcgcctGagtcgtgggagatctgttgc	18	8	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38953259	C	C	38953259	4	2	149	1	0	0	0	0	0	1	0	0	8536	1294	45	4	523	4	KRT28	17	38953259	Nonsense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	765486	38953259	42241951	290	128772											
KRT13	3860	broad.mit.edu	37	chr17	39658760	39658760	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctcgctcagctgggcctcGatgctgctgatgagtccctg	13	13	1	2	rs147022064		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39658760	A	A	39658760	2	1	149	1	0	0	0	0	0	0	0	1	8521	1048	37	4		4	KRT13	17	39658760	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	705501	39658760	41536450	291	128773											
SC65	10609	broad.mit.edu	37	chr17	39967121	39967121	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggtggcagatacctgctaTggccgggtagaagtccttga	15	8	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39967121	A	A	39967121	3	1	149	1	0	0	0	0	1	0	0	0	13979	1464	51	5	556	5	SC65	17	39967121	Missense_Mutation	SNP	T	TCGA-50-5044-01A-21D-1855-08	308361	39967121	41228089	292	128774											
NSF	4905	broad.mit.edu	37	chr17	44799501	44799501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtccggcttctcgccattGggcttcacgatcttggcgct	11	14	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44799501	T	T	44799501	1	4	149	0	1	0	0	0	0	0	0	0	10766	1363	47	2		2	NSF	17	44799501	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	4832380	44799501	36395709	293	128775											
RAD51C	5889	broad.mit.edu	37	chr17	56774132	56774132	+	Frame_Shift_Del	DEL	G	-	-													gcagtttttattgatacagaGggaagttttatggttgatag							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56774132	-	-	56774132	7	5	149	1	0	1	0	1	0	0	0	0	13096	991	35	0	497	0	RAD51C	17	56774132	Frame_Shift_Del	DEL	G	TCGA-50-5044-01A-21D-1855-08	11974631	56774132	24421078	294	128776											
CLTC	1213	broad.mit.edu	37	chr17	57770952	57770952	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaaaattgtagcaatcaaAtgtgccccccatacaactca	5	12	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57770952	T	T	57770952	1	4	149	0	1	0	0	0	0	0	0	0	3598	116	4	5		5	CLTC	17	57770952	Intron	SNP	A	TCGA-50-5044-01A-21D-1855-08	996820	57770952	23424258	295	128777											
AMZ2	51321	broad.mit.edu	37	chr17	66250612	66250612	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcactataaaggcaaagtGaagaagctcaagaaaacatc	8	7	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66250612	A	A	66250612	2	1	149	1	0	0	0	0	0	0	0	1	597	1277	45	4		4	AMZ2	17	66250612	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	8479660	66250612	14944598	296	128778											
KIF19	124602	broad.mit.edu	37	chr17	72350229	72350229	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtctggctcctacccacgtCtgccatgtcagaggagggtg	14	12	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72350229	T	T	72350229	1	4	149	0	1	0	0	0	0	0	0	0	8352	928	32	4		4	KIF19	17	72350229	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	6099617	72350229	8844981	297	128779											
SLC16A5	9121	broad.mit.edu	37	chr17	73089889	73089889	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccagcaacagcgagacctCttggttcccctccatcctca	8	17	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73089889	G	G	73089889	3	3	149	1	0	0	0	0	1	0	0	0	14524	913	32	4	160	4	SLC16A5	17	73089889	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	739660	73089889	8105321	298	128780											
SLC16A5	9121	broad.mit.edu	37	chr17	73089908	73089908	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttggttcccctccatcctCacggctgtgctccacatggc	8	17	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73089908	T	T	73089908	2	4	149	1	0	0	0	0	0	0	0	1	14524	813	29	4		4	SLC16A5	17	73089908	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	19	73089908	8105302	299	128781											
TMC8	147138	broad.mit.edu	37	chr17	76133753	76133753	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctaagggaaggaagggccGgggtggccgtgagtggtgac	22	6	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76133753	T	T	76133753	1	4	149	0	1	0	0	0	0	0	0	0	16114	1131	39	1		1	TMC8	17	76133753	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	3043845	76133753	5061457	300	128782											
EIF4A3	9775	broad.mit.edu	37	chr17	78111886	78111886	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcttgatttatgtcattcaGagactcaatctgcagtttcc	6	9	5	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78111886	A	A	78111886	1	1	149	0	1	0	0	0	0	0	0	0	5068	957	33	4		4	EIF4A3	17	78111886	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	1978133	78111886	3083324	301	128783											
KIAA0802	23255	broad.mit.edu	37	chr18	8806923	8806923	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcagctgttcagcgccttCaaggccttgctggaggactt	12	12	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8806923	G	G	8806923	3	3	149	1	0	0	0	0	1	0	0	0	8264	825	29	4	2503	4	KIAA0802	18	8806923	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08		8806923	69270325	302	128784											
IMPACT	55364	broad.mit.edu	37	chr18	22023126	22023126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccaaacaggtaaagttcCtttgtctagctcactttgat	7	10	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22023126	A	A	22023126	1	1	149	0	1	0	0	0	0	0	0	0	7794	696	24	2		2	IMPACT	18	22023126	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	13216203	22023126	56054122	303	128785											
CDH2	1000	broad.mit.edu	37	chr18	25573412	25573412	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattattcatgaccaaccttCtcagtaacgaactacagacc	4	12	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25573412	T	T	25573412	1	4	149	0	1	0	0	0	0	0	0	0	3135	928	32	4		4	CDH2	18	25573412	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	3550286	25573412	52503836	304	128786											
MOCOS	55034	broad.mit.edu	37	chr18	33795647	33795647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggcctgtccctcaggccCatgctgacaccggggagact	12	15	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33795647	A	A	33795647	3	1	149	1	0	0	0	0	1	0	0	0	9783	594	21	2	1534	2	MOCOS	18	33795647	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	8222235	33795647	44281601	305	128787											
GRP	2922	broad.mit.edu	37	chr18	56897691	56897691	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggaacccccagctgaaCcagcaatgataatgatggcc	11	11	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56897691	G	G	56897691	3	3	149	1	0	0	0	0	1	0	0	0	6871	506	18	4	448	4	GRP	18	56897691	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	23102044	56897691	21179557	306	128788											
CDH7	1005	broad.mit.edu	37	chr18	63527018	63527018	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttacttcagcttaacaacGgatgcaacaaataaccacaa	4	10	1	0	rs76133199		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63527018	T	T	63527018	2	4	149	1	0	0	0	0	0	0	0	1	3145	1103	39	1		1	CDH7	18	63527018	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	6629327	63527018	14550230	307	128789											
CDH19	28513	broad.mit.edu	37	chr18	64172164	64172164	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagactgctgattctaagGagctcagggatccagctaat	11	9	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64172164	A	A	64172164	3	1	149	1	0	0	0	0	1	0	0	0	3134	1174	41	4	118	4	CDH19	18	64172164	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	645146	64172164	13905084	308	128790											
CDH19	28513	broad.mit.edu	37	chr18	64235726	64235726	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcattgtcattgatatcCgaaactttgatgacaaactc	7	8	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64235726	A	A	64235726	2	1	149	1	0	0	0	0	0	0	0	1	3134	639	23	1		1	CDH19	18	64235726	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	63562	64235726	13841522	309	128791											
ATP9B	374868	broad.mit.edu	37	chr18	77036951	77036951	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaacttggacatgggtctGgatcacactaaccactgcag	10	10	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77036951	C	C	77036951	1	2	149	0	1	0	0	0	0	0	0	0	1203	1363	47	4		4	ATP9B	18	77036951	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	12801225	77036951	1040297	310	128792											
CDC34	997	broad.mit.edu	37	chr19	536297	536297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtggacgacccccagagcGgggagctgccctcagagagg	17	13	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	536297	T	T	536297	3	4	149	1	0	0	0	0	1	0	0	0	3097	1116	39	1	329	1	CDC34	19	536297	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08		536297	58592686	311	128793											
BTBD2	55643	broad.mit.edu	37	chr19	1997366	1997366	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtgcgaggaaggcagcGggttccacgtcgggcagctc	17	11	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1997366	T	T	1997366	2	4	149	1	0	0	0	0	0	0	0	1	1553	1103	39	1		1	BTBD2	19	1997366	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	1461069	1997366	57131617	312	128794											
CHAF1A	10036	broad.mit.edu	37	chr19	4429633	4429633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagagtgcctccgtcccCgtacctcctcactgtgcccc	7	22	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4429633	A	A	4429633	1	1	149	0	1	0	0	0	0	0	0	0	3342	667	23	1		1	CHAF1A	19	4429633	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	2432267	4429633	54699350	313	128795											
LONP1	9361	broad.mit.edu	37	chr19	5692104	5692104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgatgtcgaagatctccCggtagtgttccacgaagtgc	13	10	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5692104	A	A	5692104	3	1	149	1	0	0	0	0	1	0	0	0	8979	652	23	1	64	1	LONP1	19	5692104	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1262471	5692104	53436879	314	128796											
LONP1	9361	broad.mit.edu	37	chr19	5696170	5696170	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccgtgacgttggccgtgcaGatgaacagcacctgggggcg	16	11	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5696170	C	C	5696170	3	2	149	1	0	0	0	0	1	0	0	0	8979	932	33	4	995	4	LONP1	19	5696170	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	4066	5696170	53432813	315	128797											
MCOLN1	57192	broad.mit.edu	37	chr19	7593840	7593840	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggcaccatcatgaagaTcggcatcgaggccaaggtgc	13	12	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7593840	C	C	7593840	3	2	149	1	0	0	0	0	1	0	0	0	9488	1435	50	5	1152	5	MCOLN1	19	7593840	Missense_Mutation	SNP	T	TCGA-50-5044-01A-21D-1855-08	1897670	7593840	51535143	316	128798											
MUC16	94025	broad.mit.edu	37	chr19	9074892	9074892	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaggtcacaggtggagtaGaggagggactgtgcccttgt	17	7	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9074892	A	A	9074892	3	1	149	1	0	0	0	0	1	0	0	0	10067	942	33	4	31297	4	MUC16	19	9074892	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1481052	9074892	50054091	317	128799											
CNN1	1264	broad.mit.edu	37	chr19	11657811	11657811	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggttgcaggctgggcaggGggtggtgggcagcctgggct	23	7	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11657811	A	A	11657811	1	1	149	0	1	0	0	0	0	0	0	0	3641	1247	43	4		4	CNN1	19	11657811	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	2582919	11657811	47471172	318	128800											
PRDX2	7001	broad.mit.edu	37	chr19	12911999	12911999	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtccgacagcttcacctctTtgaaggcgccatcaaccacc	7	16	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12911999	A	A	12911999	3	1	149	1	0	0	0	0	1	0	0	0	12571	1841	64	5	711	5	PRDX2	19	12911999	Missense_Mutation	SNP	T	TCGA-50-5044-01A-21D-1855-08	1254188	12911999	46216984	319	128801											
IL27RA	9466	broad.mit.edu	37	chr19	14143202	14143202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgactccctctccaggcagCgccgggccactgcagtgcta	11	17	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14143202	A	A	14143202	3	1	149	1	0	0	0	0	1	0	0	0	7751	767	27	3	111	3	IL27RA	19	14143202	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1231203	14143202	44985781	320	128802											
CYP4F22	126410	broad.mit.edu	37	chr19	15626191	15626191	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acattgatccatttcctgttCttggcatctctgtactttgt	6	10	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15626191	T	T	15626191	1	4	149	0	1	0	0	0	0	0	0	0	4222	928	32	4		4	CYP4F22	19	15626191	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	1482989	15626191	43502792	321	128803											
SF4	57794	broad.mit.edu	37	chr19	19413045	19413045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactgtggccagggtgacGgtcacctccctggcagggcc	17	13	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19413045	T	T	19413045	1	4	149	0	1	0	0	0	0	0	0	0	14268	1131	39	1		1	SF4	19	19413045	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	3786854	19413045	39715938	322	128804											
ZNF253	56242	broad.mit.edu	37	chr19	20002899	20002899	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatagttcatactggagaGaaaccctacaaatgtgaaga	9	6	1	4			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20002899	C	C	20002899	3	2	149	1	0	0	0	0	1	0	0	0	17923	933	33	4	857	4	ZNF253	19	20002899	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	589854	20002899	39126084	323	128805											
ZNF98	148198	broad.mit.edu	37	chr19	22585718	22585718	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaataacatgaatcttgctCatattctccaattaccaatt	2	10	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22585718	A	A	22585718	1	1	149	0	1	0	0	0	0	0	0	0	18332	841	29	3		3	ZNF98	19	22585718	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	2582819	22585718	36543265	324	128806											
GRAMD1A	57655	broad.mit.edu	37	chr19	35514100	35514100	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgggggtgttcagagcatCtagaccccaggaatcctgac	12	10	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35514100	G	G	35514100	1	3	149	0	1	0	0	0	0	0	0	0	6813	928	32	4		4	GRAMD1A	19	35514100	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	12928382	35514100	23614883	325	128807											
KIRREL2	84063	broad.mit.edu	37	chr19	36353331	36353331	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaggaatcccaaactcaatCcctgagcccccgcttcctgg	7	18	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36353331	T	T	36353331	1	4	149	0	1	0	0	0	0	0	0	0	8396	870	30	4		4	KIRREL2	19	36353331	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	839231	36353331	22775652	326	128808											
ZNF780A	284323	broad.mit.edu	37	chr19	40578106	40578106	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctccaatgttaatgacatcGaaggcacccctccagaggaa	9	12	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40578106	A	A	40578106	1	1	149	0	1	0	0	0	0	0	0	0	18281	1073	37	4		4	ZNF780A	19	40578106	3'UTR	SNP	G	TCGA-50-5044-01A-21D-1855-08	4224775	40578106	18550877	327	128809											
ZNF780A	284323	broad.mit.edu	37	chr19	40578120	40578121	+	3'UTR	DNP	AG	CA	CA													gacatcgaaggcacccctccAgaggaaatctcaactgcaca							TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	40578121	CA	CA	40578120	1	2	149	0	1	0	0	0	0	0	0	0	18281	203	7	5		5	ZNF780A	19	40578120	3'UTR	DNP	AG	TCGA-50-5044-01A-21D-1855-08	14	40578120	18550863	328	128810											
CYP2A7	1549	broad.mit.edu	37	chr19	41386278	41386278	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactccagggctggaagtgcGggcgcctttccccacctagt	13	14	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41386278	T	T	41386278	1	4	149	0	1	0	0	0	0	0	0	0	4196	1131	39	1		1	CYP2A7	19	41386278	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	808158	41386278	17742705	329	128811											
CEACAM20	125931	broad.mit.edu	37	chr19	45016958	45016958	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggggtgctcctccttcGggatgggttgtgaggtctca	16	9	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45016958	T	T	45016958	3	4	149	1	0	0	0	0	1	0	0	0	3221	1103	39	1	329	1	CEACAM20	19	45016958	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	3630680	45016958	14112025	330	128812											
RCN3	57333	broad.mit.edu	37	chr19	50031654	50031654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaggtaacccctccacccCgccattctcctatcccgtgt	5	20	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50031654	A	A	50031654	1	1	149	0	1	0	0	0	0	0	0	0	13289	667	23	1		1	RCN3	19	50031654	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	5014696	50031654	9097329	331	128813											
KLK2	3817	broad.mit.edu	37	chr19	51378047	51378047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcattcccaaccctggcaGgtggctgtgtacagtcatgg	12	11	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51378047	T	T	51378047	3	4	149	1	0	0	0	0	1	0	0	0	8475	991	35	2	123	2	KLK2	19	51378047	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1346393	51378047	7750936	332	128814											
ZNF813	126017	broad.mit.edu	37	chr19	53989742	53989742	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacacagctgggaagacaaAatgtggtgaagaacccctta	10	8	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53989742	C	C	53989742	1	2	149	0	1	0	0	0	0	0	0	0	18304	29	1	5		5	ZNF813	19	53989742	Intron	SNP	A	TCGA-50-5044-01A-21D-1855-08	2611695	53989742	5139241	333	128815											
TMEM190	147744	broad.mit.edu	37	chr19	55889060	55889060	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgctgctaccgcaatgGggtctgctaccaccagcgtc	12	15	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55889060	C	C	55889060	3	2	149	1	0	0	0	0	1	0	0	0	16237	1232	43	4	204	4	TMEM190	19	55889060	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	1899318	55889060	3239923	334	128816											
VPS16	64601	broad.mit.edu	37	chr20	2840556	2840556	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcttgttgccacccccCactcaccctgctgagatgct	7	16	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2840556	A	A	2840556	1	1	149	0	1	0	0	0	0	0	0	0	17320	609	21	2		2	VPS16	20	2840556	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08		2840556	60184964	335	128817											
ATRN	8455	broad.mit.edu	37	chr20	3564730	3564730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacgatgagcacctgccccCgtaagtgaaaaagggagccc	11	12	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3564730	A	A	3564730	3	1	149	1	0	0	0	0	1	0	0	0	1210	666	23	1	3016	1	ATRN	20	3564730	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	724174	3564730	59460790	336	128818											
SPTLC3	55304	broad.mit.edu	37	chr20	13074349	13074349	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaaacacaattatgtttAtattcactcctggcttgtta	5	8	1	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13074349	G	G	13074349	1	3	149	0	1	0	0	0	0	0	0	0	15243	464	16	5		5	SPTLC3	20	13074349	Intron	SNP	A	TCGA-50-5044-01A-21D-1855-08	9509619	13074349	49951171	337	128819											
RIN2	54453	broad.mit.edu	37	chr20	19970783	19970783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaacctgcagcttgtgcgGcagaggaatccgcaggagct	15	10	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19970783	T	T	19970783	2	4	149	1	0	0	0	0	0	0	0	1	13483	1190	42	3		3	RIN2	20	19970783	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	6896434	19970783	43054737	338	128820											
BPIL1	80341	broad.mit.edu	37	chr20	31609588	31609588	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctccactatgtcgcccctGagatctttgtctatgaggtg	9	12	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31609588	C	C	31609588	3	2	149	1	0	0	0	0	1	0	0	0	1500	1291	45	4	1372	4	BPIL1	20	31609588	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	11638805	31609588	31415932	339	128821											
ITCH	83737	broad.mit.edu	37	chr20	33068500	33068500	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactcaaggatttagaatctAttgatccagaattttacaat	6	6	2	3	rs139633287		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33068500	G	G	33068500	3	3	149	1	0	0	0	0	1	0	0	0	7938	449	16	5	1981	5	ITCH	20	33068500	Missense_Mutation	SNP	A	TCGA-50-5044-01A-21D-1855-08	1458912	33068500	29957020	340	128822											
GSS	2937	broad.mit.edu	37	chr20	33519152	33519152	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctacctccaccctctctCtggggctttagcacaaaccg	6	18	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33519152	G	G	33519152	3	3	149	1	0	0	0	0	1	0	0	0	6895	912	32	4	338	4	GSS	20	33519152	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	450652	33519152	29506368	341	128823											
BPI	671	broad.mit.edu	37	chr20	36946756	36946756	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatatctggcccgttattgTcaagggacatttttcactat	8	9	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36946756	C	C	36946756	1	2	149	0	1	0	0	0	0	0	0	0	1499	1682	58	5		5	BPI	20	36946756	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	3427604	36946756	26078764	342	128824											
DDX27	55661	broad.mit.edu	37	chr20	47841720	47841720	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttccaggacatgaacctttCccgccctcttctgaaggtag	9	13	2	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47841720	T	T	47841720	3	4	149	1	0	0	0	0	1	0	0	0	4387	855	30	4	699	4	DDX27	20	47841720	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	10894964	47841720	15183800	343	128825											
BCAS4	55653	broad.mit.edu	37	chr20	49457185	49457185	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttgcttctcctgttcaatCgtttctttggaaggcagtgg	11	9	3	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49457185	T	T	49457185	1	4	149	0	1	0	0	0	0	0	0	0	1358	899	31	4		4	BCAS4	20	49457185	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	1615465	49457185	13568335	344	128826											
ADNP	23394	broad.mit.edu	37	chr20	49510947	49510947	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attaaggagaatcctattttCaaagtcttcactatggacat	6	7	3	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49510947	G	G	49510947	3	3	149	1	0	0	0	0	1	0	0	0	323	835	29	4	3008	4	ADNP	20	49510947	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	53762	49510947	13514573	345	128827											
LAMA5	3911	broad.mit.edu	37	chr20	60922090	60922090	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgcactgcagcctgtgGggtacacaggaggggggatc	18	9	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60922090	A	A	60922090	1	1	149	0	1	0	0	0	0	0	0	0	8681	1247	43	4		4	LAMA5	20	60922090	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	11411143	60922090	2103430	346	128828											
RTEL1	51750	broad.mit.edu	37	chr20	62324308	62324308	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgccgccctggccgcctgtCtcggccccctctttgctgag	11	19	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62324308	T	T	62324308	3	4	149	1	0	0	0	0	1	0	0	0	13831	913	32	4	2913	4	RTEL1	20	62324308	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	1402218	62324308	701212	347	128829											
ZNF512B	57473	broad.mit.edu	37	chr20	62595225	62595225	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggcagacggcttcccCgcgctcatggatggccctct	15	14	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62595225	A	A	62595225	3	1	149	1	0	0	0	0	1	0	0	0	18084	652	23	1	1192	1	ZNF512B	20	62595225	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	270917	62595225	430295	348	128830											
PKNOX1	5316	broad.mit.edu	37	chr21	44445025	44445025	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaacagattgctgctcaGacaaatttgacactactcca	5	10	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44445025	A	A	44445025	2	1	149	1	0	0	0	0	0	0	0	1	12077	933	33	4		4	PKNOX1	21	44445025	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08		44445025	3684870	349	128831											
PI4KA	5297	broad.mit.edu	37	chr22	21174274	21174274	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taacttgtaacattgactaaGatttcacaacccacccacta	3	12	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21174274	C	C	21174274	1	2	149	0	1	0	0	0	0	0	0	0	11968	957	33	4		4	PI4KA	22	21174274	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08		21174274	30130292	350	128832											
SLC5A1	6523	broad.mit.edu	37	chr22	32477992	32477992	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaaccagcacctcaaacCcagctcgggatcaggcacta	7	14	2	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32477992	T	T	32477992	1	4	149	0	1	0	0	0	0	0	0	0	14775	638	22	4		4	SLC5A1	22	32477992	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	11303718	32477992	18826574	351	128833											
RBM9	23543	broad.mit.edu	37	chr22	36217888	36217888	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcctctcctgaggccgctGaaggaaggggtcaagtgagt	14	11	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36217888	A	A	36217888	1	1	149	0	1	0	0	0	0	0	0	0	13255	1305	45	4		4	RBM9	22	36217888	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	3739896	36217888	15086678	352	128834											
LGALS2	3957	broad.mit.edu	37	chr22	37966318	37966318	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaacccgccccttacgctCaggtagctcaggtggctgtg	12	13	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37966318	T	T	37966318	2	4	149	1	0	0	0	0	0	0	0	1	8814	813	29	4		4	LGALS2	22	37966318	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	1748430	37966318	13338248	353	128835											
SMC1B	27127	broad.mit.edu	37	chr22	45779257	45779257	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgaactcttaaactataGaattggcactgttattataa	5	5	1	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45779257	A	A	45779257	1	1	149	0	1	0	0	0	0	0	0	0	14896	957	33	4		4	SMC1B	22	45779257	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	7812939	45779257	5525309	354	128836											
IL3RA	3563	broad.mit.edu	37	chrX	1464320	1464320	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttaaagacgccgactattCtatgccggtaaatcatactc	7	10	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1464320	T	T	1464320	3	4	149	1	0	0	0	0	1	0	0	0	7765	913	32	4	182	4	IL3RA	23	1464320	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08		1464320	153806240	355	128837											
SLC25A6	293	broad.mit.edu	37	chrX	1508554	1508554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgctccttggggatgcGgacaatgcagtccacgatgc	13	13	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1508554	T	T	1508554	3	4	149	1	0	0	0	0	1	0	0	0	14627	1116	39	1	730	1	SLC25A6	23	1508554	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	44234	1508554	153762006	356	128838											
EGFL6	25975	broad.mit.edu	37	chrX	13636018	13636018	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggtgaacttgcagcccttCaactatgaagagatagtttc	9	8	1	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13636018	G	G	13636018	3	3	149	1	0	0	0	0	1	0	0	0	5003	825	29	4	978	4	EGFL6	23	13636018	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	12127464	13636018	141634542	357	128839											
PORCN	64840	broad.mit.edu	37	chrX	48369961	48369961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaagttgtccaagacagGgagggtggtgagattccccg	15	7	0	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48369961	T	T	48369961	1	4	149	0	1	0	0	0	0	0	0	0	12353	1247	43	2		2	PORCN	23	48369961	Intron	SNP	G	TCGA-50-5044-01A-21D-1855-08	34733943	48369961	106900599	358	128840											
KCND1	3750	broad.mit.edu	37	chrX	48822970	48822970	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctattctgctatatcacctCacattaggcctcaccgttgt	5	13	5	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48822970	T	T	48822970	1	4	149	0	1	0	0	0	0	0	0	0	8088	841	29	4		4	KCND1	23	48822970	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	453009	48822970	106447590	359	128841											
ZC4H2	55906	broad.mit.edu	37	chrX	64141841	64141841	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagccttcaaacgagccttGatcttctccatctgcagggt	8	13	5	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64141841	C	C	64141841	3	2	149	1	0	0	0	0	1	0	0	0	17704	1280	45	4	628	4	ZC4H2	23	64141841	Missense_Mutation	SNP	G	TCGA-50-5044-01A-21D-1855-08	15318871	64141841	91128719	360	128842											
MSN	4478	broad.mit.edu	37	chrX	64951695	64951695	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacccccaactctgtgtcaTttagggaggatgctgtcctg	11	11	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64951695	A	A	64951695	1	1	149	0	1	0	0	0	0	0	0	0	9979	1508	52	5		5	MSN	23	64951695	Intron	SNP	T	TCGA-50-5044-01A-21D-1855-08	809854	64951695	90318865	361	128843											
FAM155B	27112	broad.mit.edu	37	chrX	68749637	68749637	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagcccgccctgctgccGgtctctgggggctcccgcct	12	18	1	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68749637	T	T	68749637	2	4	149	1	0	0	0	0	0	0	0	1	5512	1103	39	1		1	FAM155B	23	68749637	Silent	SNP	G	TCGA-50-5044-01A-21D-1855-08	3797942	68749637	86520923	362	128844											
ATP7A	538	broad.mit.edu	37	chrX	77245109	77245109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagtcactccagaatccCtgagaaaagcaatagaggct	9	11	2	3			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77245109	A	A	77245109	3	1	149	1	0	0	0	0	1	0	0	0	1194	680	24	2	1001	2	ATP7A	23	77245109	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	8495472	77245109	78025451	363	128845											
HTR2C	3358	broad.mit.edu	37	chrX	114010115	114010115	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacaggaggacagtcatgActccaccagcaagttcaata	10	10	2	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114010115	T	T	114010115	1	4	149	0	1	0	0	0	0	0	0	0	7513	290	10	5		5	HTR2C	23	114010115	Intron	SNP	A	TCGA-50-5044-01A-21D-1855-08	36765006	114010115	41260445	364	128846											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217634	130217634	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgctgggaggagtgctaCagcccctgcttcctcctgat	13	12	0	1			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130217634	T	T	130217634	1	4	149	0	1	0	0	0	0	0	0	0	885	493	17	4		4	ARHGAP36	23	130217634	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	16207519	130217634	25052926	365	128847											
FGF13	2258	broad.mit.edu	37	chrX	137785219	137785219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccttggatagccaccactCgcagacccacagggatgagg	11	14	0	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137785219	A	A	137785219	3	1	149	1	0	0	0	0	1	0	0	0	5899	884	31	3	420	3	FGF13	23	137785219	Missense_Mutation	SNP	C	TCGA-50-5044-01A-21D-1855-08	7567585	137785219	17485341	366	128848											
AFF2	2334	broad.mit.edu	37	chrX	147743947	147743947	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagatgctttcaaagaaatCtttcaatccaattcaccgga	6	9	4	2			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147743947	T	T	147743947	2	4	149	1	0	0	0	0	0	0	0	1	357	903	32	4		4	AFF2	23	147743947	Silent	SNP	C	TCGA-50-5044-01A-21D-1855-08	9958728	147743947	7526613	367	128849											
ZNF185	7739	broad.mit.edu	37	chrX	152087652	152087652	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaatggtgccttttgggcatCccggggggcagggcaggagc	19	9	0	0			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152087652	T	T	152087652	1	4	149	0	1	0	0	0	0	0	0	0	17878	870	30	4		4	ZNF185	23	152087652	Intron	SNP	C	TCGA-50-5044-01A-21D-1855-08	4343705	152087652	3182908	368	128850											
AGRN	375790	broad.mit.edu	37	chr1	979211	979212	+	Missense_Mutation	DNP	GG	TT	TT													tgtctcctgcagagacctgtGgagatgccgtgtgtgctttt							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	979212	TT	TT	979211	3	4	150	1	0	0	0	0	1	0	0	0	397	1349	47	2	1845	2	AGRN	1	979211	Missense_Mutation	DNP	GG	TCGA-50-5045-01A-01D-1625-08		979211	248271410	1	128851											
ACTRT2	140625	broad.mit.edu	37	chr1	2938505	2938505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcacagggtgggatgaCgtggagagactctggaagca	16	7	2	3	rs140563911	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2938505	A	A	2938505	3	1	150	1	0	0	0	0	1	0	0	0	219	535	19	3	257	3	ACTRT2	1	2938505	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1959294	2938505	246312116	2	128852											
CHD5	26038	broad.mit.edu	37	chr1	6203992	6203992	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcccagcatcagctccCtgggaaacggcattggaggc	11	14	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6203992	A	A	6203992	5	1	150	1	0	0	0	0	0	0	1	0	3359	695	24	2	4046	2	CHD5	1	6203992	Splice_Site	SNP	C	TCGA-50-5045-01A-01D-1625-08	3265487	6203992	243046629	3	128853											
CTRC	11330	broad.mit.edu	37	chr1	15771101	15771101	+	Missense_Mutation	SNP	C	G	G													actgctcactctctccccagCcaacggccccattgctgata							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15771101	G	G	15771101	3	3	150	1	0	0	0	0	1	0	0	0	4061	753	26	4	516	4	CTRC	1	15771101	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	9567109	15771101	233479520	4	128854	557	2									
CTRC	11330	broad.mit.edu	37	chr1	15771105	15771105	+	Missense_Mutation	SNP	C	A	A													ctcactctctccccagccaaCggccccattgctgataagct							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15771105	A	A	15771105	3	1	150	1	0	0	0	0	1	0	0	0	4061	535	19	3	520	3	CTRC	1	15771105	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4	15771105	233479516	5	128855	557	2									
SPATA21	374955	broad.mit.edu	37	chr1	16736440	16736440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacttcatgaagccctgccgGaagttcccgaggctctgtgt	11	13	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16736440	T	T	16736440	3	4	150	1	0	0	0	0	1	0	0	0	15123	1165	41	3	1198	3	SPATA21	1	16736440	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	965335	16736440	232514181	6	128856											
BSDC1	55108	broad.mit.edu	37	chr1	32843931	32843931	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactttgggagtgtttgtgtGgggtctgtgtccccagcctt	15	8	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32843931	A	A	32843931	1	1	150	0	1	0	0	0	0	0	0	0	1537	1363	47	4		4	BSDC1	1	32843931	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	16107491	32843931	216406690	7	128857											
CSMD2	114784	broad.mit.edu	37	chr1	34067830	34067830	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccattccactatgtttatttGaaacccaggaggctgacagc	8	11	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34067830	C	C	34067830	1	2	150	0	1	0	0	0	0	0	0	0	3979	1305	45	4		4	CSMD2	1	34067830	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1223899	34067830	215182791	8	128858											
CLSPN	63967	broad.mit.edu	37	chr1	36226071	36226071	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcactttttcaggtggcCcaactgctgatgatttattt	8	9	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36226071	A	A	36226071	3	1	150	1	0	0	0	0	1	0	0	0	3592	623	22	2	2640	2	CLSPN	1	36226071	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2158241	36226071	213024550	9	128859											
GJA9	81025	broad.mit.edu	37	chr1	39341324	39341324	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgcaaagcaaggttcctctGagtggagctttatttagttt	11	6	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39341324	C	C	39341324	2	2	150	1	0	0	0	0	0	0	0	1	6470	1277	45	4		4	GJA9	1	39341324	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	3115253	39341324	209909297	10	128860											
MACF1	23499	broad.mit.edu	37	chr1	39549929	39549929	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagacgctcagtgagcggtcAtgtcggagtgagcggtcttg	17	8	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39549929	T	T	39549929	3	4	150	1	0	0	0	0	1	0	0	0	9232	204	8	5	41	5	MACF1	1	39549929	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	208605	39549929	209700692	11	128861											
TESK2	10420	broad.mit.edu	37	chr1	45810546	45810546	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccctgggtttgcaggcctAtgcctgaggtggagaaggtg	16	8	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45810546	C	C	45810546	3	2	150	1	0	0	0	0	1	0	0	0	15890	449	16	5	37	5	TESK2	1	45810546	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	6260617	45810546	203440075	12	128862											
SPATA6	54558	broad.mit.edu	37	chr1	48902501	48902501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggtcctccttatagccCattggatatcagtattttcc	7	10	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48902501	A	A	48902501	1	1	150	0	1	0	0	0	0	0	0	0	15129	609	21	2		2	SPATA6	1	48902501	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	3091955	48902501	200348120	13	128863											
FAF1	11124	broad.mit.edu	37	chr1	50957420	50957420	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcagcctcaagtgaaagGcgataggcctcatcttgctc	10	12	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50957420	A	A	50957420	2	1	150	1	0	0	0	0	0	0	0	1	5415	1190	42	4		4	FAF1	1	50957420	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	2054919	50957420	198293201	14	128864											
DAB1	1600	broad.mit.edu	37	chr1	57476938	57476938	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctctgtctaggggctggGgttggagctacacagagacc	16	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57476938	T	T	57476938	2	4	150	1	0	0	0	0	0	0	0	1	4250	1219	43	2		2	DAB1	1	57476938	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	6519518	57476938	191773683	15	128865											
PDE4B	5142	broad.mit.edu	37	chr1	66829340	66829340	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtagcatgtgcctgtaGtcctagctactcgggaggct	13	9	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66829340	T	T	66829340	1	4	150	0	1	0	0	0	0	0	0	0	11734	1044	36	3		3	PDE4B	1	66829340	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	9352402	66829340	182421281	16	128866											
WLS	79971	broad.mit.edu	37	chr1	68649100	68649100	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catactaccaatggcctgttCcatcatagcagggatagttc	8	11	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68649100	A	A	68649100	1	1	150	0	1	0	0	0	0	0	0	0	17503	870	30	3		3	WLS	1	68649100	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1819760	68649100	180601521	17	128867											
LRRC7	57554	broad.mit.edu	37	chr1	70486899	70486899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatagattttgggacaaaGtcagatacttcttcaagtct	8	7	4	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70486899	T	T	70486899	1	4	150	0	1	0	0	0	0	0	0	0	9107	1044	36	3		3	LRRC7	1	70486899	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1837799	70486899	178763722	18	128868											
PIGK	10026	broad.mit.edu	37	chr1	77672265	77672265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaatacaaatataataaCaattatctaagggttatttt	3	4	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77672265	A	A	77672265	1	1	150	0	1	0	0	0	0	0	0	0	11985	493	17	3		3	PIGK	1	77672265	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	7185366	77672265	171578356	19	128869											
USP33	23032	broad.mit.edu	37	chr1	78167087	78167087	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcacaaaactttcccattCtctaaaccactgcatactga	2	14	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78167087	T	T	78167087	3	4	150	1	0	0	0	0	1	0	0	0	17191	922	32	4	271	4	USP33	1	78167087	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	494822	78167087	171083534	20	128870											
GIPC2	54810	broad.mit.edu	37	chr1	78511902	78511902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggctcccgcacgcaggCtggtcttccacgcgcagctg	13	18	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78511902	A	A	78511902	3	1	150	1	0	0	0	0	1	0	0	0	6457	796	28	3	126	3	GIPC2	1	78511902	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	344815	78511902	170738719	21	128871											
LPHN2	23266	broad.mit.edu	37	chr1	82456636	82456636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggaagaagacctctctcCctccaggaggagtgagaatg	12	10	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82456636	A	A	82456636	3	1	150	1	0	0	0	0	1	0	0	0	9003	623	22	2	4093	2	LPHN2	1	82456636	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3944734	82456636	166793985	22	128872											
COL24A1	255631	broad.mit.edu	37	chr1	86515893	86515893	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatagtctgtatattagttCatttgaatattctccccata	4	7	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86515893	A	A	86515893	1	1	150	0	1	0	0	0	0	0	0	0	3715	841	29	3		3	COL24A1	1	86515893	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	4059257	86515893	162734728	23	128873											
BARHL2	343472	broad.mit.edu	37	chr1	91182020	91182020	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accgtcgcccagtcgcccgaGaagctcctggaatcgctccc	10	18	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91182020	A	A	91182020	1	1	150	0	1	0	0	0	0	0	0	0	1319	957	33	4		4	BARHL2	1	91182020	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	4666127	91182020	158068601	24	128874											
ZNF644	84146	broad.mit.edu	37	chr1	91405405	91405405	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagggcaattggtaccaaaCacacactgaggacactgtaa	9	9	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91405405	A	A	91405405	2	1	150	1	0	0	0	0	0	0	0	1	18187	465	17	3		3	ZNF644	1	91405405	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	223385	91405405	157845216	25	128875											
TGFBR3	7049	broad.mit.edu	37	chr1	92163595	92163595	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttcactaaccaactcattCttaggaaagcccaggaggtt	8	10	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92163595	A	A	92163595	1	1	150	0	1	0	0	0	0	0	0	0	15946	928	32	3		3	TGFBR3	1	92163595	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	758190	92163595	157087026	26	128876											
LPPR4	9890	broad.mit.edu	37	chr1	99771695	99771695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctgggcagtcaccacCcagatccatagaaatgaggt	11	11	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771695	A	A	99771695	3	1	150	1	0	0	0	0	1	0	0	0	9014	623	22	2	1447	2	LPPR4	1	99771695	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	7608100	99771695	149478926	27	128877											
OLFM3	118427	broad.mit.edu	37	chr1	102290750	102290750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagcatctgttttgtactGttccagcacggggatcaaag	10	9	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102290750	T	T	102290750	3	4	150	1	0	0	0	0	1	0	0	0	10949	1386	48	3	964	3	OLFM3	1	102290750	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2519055	102290750	146959871	28	128878											
COL11A1	1301	broad.mit.edu	37	chr1	103461467	103461467	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgacaccatctgctccctGtggaataaattagaagtatt	7	9	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103461467	A	A	103461467	1	1	150	0	1	0	0	0	0	0	0	0	3699	1392	48	4		4	COL11A1	1	103461467	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1170717	103461467	145789154	29	128879											
WDR47	22911	broad.mit.edu	37	chr1	109525200	109525200	+	Intron	DEL	A	-	-													agcacagattgaacaaaaagAaaaacagcacttgaaactga							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109525200	-	-	109525200	6	5	150	0	1	1	0	1	0	0	0	0	17427	261	9	0		0	WDR47	1	109525200	Intron	DEL	A	TCGA-50-5045-01A-01D-1625-08	6063733	109525200	139725421	30	128880											
WDR47	22911	broad.mit.edu	37	chr1	109525251	109525251	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtatgtccactcaaagcaTggaggccctgtcctctttga	9	12	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109525251	C	C	109525251	3	2	150	1	0	0	0	0	1	0	0	0	17427	1464	51	5	529	5	WDR47	1	109525251	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	51	109525251	139725370	31	128881											
GPR61	83873	broad.mit.edu	37	chr1	110086058	110086058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgtcagccatcaatgtGgagcgctactattacgtagt	11	9	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110086058	T	T	110086058	2	4	150	1	0	0	0	0	0	0	0	1	6767	1335	47	2		2	GPR61	1	110086058	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	560807	110086058	139164563	32	128882											
CD101	9398	broad.mit.edu	37	chr1	117552674	117552674	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggatgctgccttctcttaCgcagtatatacgcagcgggt	11	10	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117552674	T	T	117552674	2	4	150	1	0	0	0	0	0	0	0	1	2992	547	19	4		4	CD101	1	117552674	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	7466616	117552674	131697947	33	128883											
WARS2	10352	broad.mit.edu	37	chr1	119575563	119575563	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccaccaatttcttcacctCctggcacacagtgtatgcta	5	15	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119575563	A	A	119575563	4	1	150	1	0	0	0	0	0	1	0	0	17377	864	30	3	32	3	WARS2	1	119575563	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2022889	119575563	129675058	34	128884											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857684	144857684	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggggaagaccagagctgGggaattcataccaacatccc	12	11	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144857684	C	C	144857684	3	2	150	1	0	0	0	0	1	0	0	0	11737	1232	43	4	694	4	PDE4DIP	1	144857684	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	25282121	144857684	104392937	35	128885											
SV2A	9900	broad.mit.edu	37	chr1	149882372	149882372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggatttccgggggctGctcaccatagtgggggatga	19	7	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149882372	T	T	149882372	1	4	150	0	1	0	0	0	0	0	0	0	15535	1334	46	3		3	SV2A	1	149882372	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5024688	149882372	99368249	36	128886											
PLEKHO1	51177	broad.mit.edu	37	chr1	150123252	150123252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctctgagaaggaggtgGgtgcctcttgcctctaactc	11	11	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150123252	T	T	150123252	1	4	150	0	1	0	0	0	0	0	0	0	12179	1247	43	2		2	PLEKHO1	1	150123252	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	240880	150123252	99127369	37	128887											
PRUNE	58497	broad.mit.edu	37	chr1	151006549	151006549	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatttctggcctgagtcaaGatgaggaggaccctccgctg	13	10	2	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151006549	T	T	151006549	3	4	150	1	0	0	0	0	1	0	0	0	12746	942	33	3	1231	3	PRUNE	1	151006549	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	883297	151006549	98244072	38	128888											
FLG	2312	broad.mit.edu	37	chr1	152277601	152277601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcgtgatgggacctgGggtgtctggagccgtgcctt	16	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152277601	T	T	152277601	3	4	150	1	0	0	0	0	1	0	0	0	5979	1232	43	2	2428	2	FLG	1	152277601	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1271052	152277601	96973020	39	128889											
FLG	2312	broad.mit.edu	37	chr1	152285039	152285039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacgtgcggactcttggtGgctctgctgatggtgaccag	15	10	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152285039	T	T	152285039	3	4	150	1	0	0	0	0	1	0	0	0	5979	1348	47	2	9866	2	FLG	1	152285039	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	7438	152285039	96965582	40	128890											
SPRR2E	6704	broad.mit.edu	37	chr1	153065950	153065950	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagatgcaggtgaagctgTggaacaaggtgagccaatta	14	5	0	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153065950	G	G	153065950	1	3	150	0	1	0	0	0	0	0	0	0	15218	1711	59	5		5	SPRR2E	1	153065950	3'UTR	SNP	T	TCGA-50-5045-01A-01D-1625-08	780911	153065950	96184671	41	128891											
C1orf77	26097	broad.mit.edu	37	chr1	153609129	153609129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatgtctctaaatgagcGgtgaggcagccaacagcaac	11	10	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153609129	T	T	153609129	3	4	150	1	0	0	0	0	1	0	0	0	2081	1130	39	1	67	1	C1orf77	1	153609129	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	543179	153609129	95641492	42	128892											
SHE	126669	broad.mit.edu	37	chr1	154458886	154458886	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttttcattaaaaaccccaTccaggcaagtgttcattaac	6	10	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154458886	C	C	154458886	1	2	150	0	1	0	0	0	0	0	0	0	14389	1450	50	5		5	SHE	1	154458886	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	849757	154458886	94791735	43	128893											
FCRL3	115352	broad.mit.edu	37	chr1	157665181	157665181	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccattgtctgcatcacagGagtagtttccagaatgttct	10	9	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157665181	T	T	157665181	3	4	150	1	0	0	0	0	1	0	0	0	5853	1174	41	3	887	3	FCRL3	1	157665181	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3206295	157665181	91585440	44	128894											
CD1B	910	broad.mit.edu	37	chr1	158299789	158299789	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgccctgctgccaccttCtggggaaggcacacatgaag	12	13	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158299789	A	A	158299789	4	1	150	1	0	0	0	0	0	1	0	0	3005	922	32	3	557	3	CD1B	1	158299789	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	634608	158299789	90950832	45	128895											
SPTA1	6708	broad.mit.edu	37	chr1	158589026	158589026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcacacctggtttccaggatCcattgaaggaaggtactggc	12	10	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158589026	A	A	158589026	3	1	150	1	0	0	0	0	1	0	0	0	15234	856	30	3	775	3	SPTA1	1	158589026	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	289237	158589026	90661595	46	128896											
SPTA1	6708	broad.mit.edu	37	chr1	158615143	158615143	+	Frame_Shift_Del	DEL	G	-	-													tcctctaaggcctggaaggtGggagcctctgcctccatgtc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158615143	-	-	158615143	7	5	150	1	0	1	0	1	0	0	0	0	15234	1335	47	0	3326	0	SPTA1	1	158615143	Frame_Shift_Del	DEL	G	TCGA-50-5045-01A-01D-1625-08	26117	158615143	90635478	47	128897											
SLAMF8	56833	broad.mit.edu	37	chr1	159802604	159802604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggtagatcccagagcCagagatgtgggccctgccca	13	14	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159802604	A	A	159802604	1	1	150	0	1	0	0	0	0	0	0	0	14483	609	21	2		2	SLAMF8	1	159802604	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1187461	159802604	89448017	48	128898											
NCSTN	23385	broad.mit.edu	37	chr1	160325562	160325562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaggtagcactgagccaGgctgggtgggagcctggggc	19	10	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160325562	T	T	160325562	1	4	150	0	1	0	0	0	0	0	0	0	10336	1015	35	2		2	NCSTN	1	160325562	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	522958	160325562	88925059	49	128899											
VANGL2	57216	broad.mit.edu	37	chr1	160385911	160385911	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccgaggggacaagtcggTgacaatccaggctcccgggg	18	11	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160385911	G	G	160385911	3	3	150	1	0	0	0	0	1	0	0	0	17247	1696	59	5	137	5	VANGL2	1	160385911	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	60349	160385911	88864710	50	128900											
LY9	4063	broad.mit.edu	37	chr1	160766226	160766226	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggagtctcactctgttgccAggctggagtgaagtggcgca	15	10	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160766226	T	T	160766226	1	4	150	0	1	0	0	0	0	0	0	0	9189	203	7	5		5	LY9	1	160766226	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	380315	160766226	88484395	51	128901											
CD244	51744	broad.mit.edu	37	chr1	160811258	160811258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccctgcccctgtaggcGgggtttctcaactttatctg	9	14	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160811258	T	T	160811258	3	4	150	1	0	0	0	0	1	0	0	0	3017	1116	39	1	728	1	CD244	1	160811258	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	45032	160811258	88439363	52	128902											
FCGR3A	2214	broad.mit.edu	37	chr1	161514427	161514427	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcccaactcaacttcCcagtgtgattgcaggttcca	6	15	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161514427	G	G	161514427	1	3	150	0	1	0	0	0	0	0	0	0	5841	638	22	4		4	FCGR3A	1	161514427	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	703169	161514427	87736194	53	128903											
ADCY10	55811	broad.mit.edu	37	chr1	167787545	167787545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaaaaatcagtatcaccCattaggaataggctggcttt	8	7	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167787545	A	A	167787545	1	1	150	0	1	0	0	0	0	0	0	0	293	609	21	2		2	ADCY10	1	167787545	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	6273118	167787545	81463076	54	128904											
MYOC	4653	broad.mit.edu	37	chr1	171607754	171607754	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccggtgtctccctctccaCtcctgagatagccagatggg	10	14	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171607754	T	T	171607754	3	4	150	1	0	0	0	0	1	0	0	0	10180	565	20	4	809	4	MYOC	1	171607754	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3820209	171607754	77642867	55	128905											
PAPPA2	60676	broad.mit.edu	37	chr1	176525751	176525751	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaggacgcagcaaaccagAcactgaaggaaatgctgtga	11	9	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176525751	T	T	176525751	3	4	150	1	0	0	0	0	1	0	0	0	11527	275	10	5	295	5	PAPPA2	1	176525751	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	4917997	176525751	72724870	56	128906											
CACNA1E	777	broad.mit.edu	37	chr1	181763957	181763957	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttttagatcttttcaatcGttaatccataccttgtgttt	4	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181763957	A	A	181763957	1	1	150	0	1	0	0	0	0	0	0	0	2568	1160	40	4		4	CACNA1E	1	181763957	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5238206	181763957	67486664	57	128907											
PTPRC	5788	broad.mit.edu	37	chr1	198677355	198677355	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatattgaaacctttacttGtgatacacagaatattacct	4	7	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198677355	C	C	198677355	3	2	150	1	0	0	0	0	1	0	0	0	12905	1377	48	4	1037	4	PTPRC	1	198677355	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	16913398	198677355	50573266	58	128908											
ZNF281	23528	broad.mit.edu	37	chr1	200376396	200376396	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctttctgaggatctatcTggctagctaactcctgagat	9	9	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200376396	A	A	200376396	3	1	150	1	0	0	0	0	1	0	0	0	17944	1580	55	5	253	5	ZNF281	1	200376396	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	1699041	200376396	48874225	59	128909											
CACNA1S	779	broad.mit.edu	37	chr1	201028483	201028483	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgggtttgcccaccctgtAgattgcattcccagagcccc	10	16	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201028483	T	T	201028483	1	4	150	0	1	0	0	0	0	0	0	0	2573	435	15	5		5	CACNA1S	1	201028483	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	652087	201028483	48222138	60	128910											
CACNA1S	779	broad.mit.edu	37	chr1	201046031	201046031	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgttcagaaggagggacacGcagagggagagcctacctgg	16	10	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201046031	C	C	201046031	1	2	150	0	1	0	0	0	0	0	0	0	2573	1102	38	4		4	CACNA1S	1	201046031	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	17548	201046031	48204590	61	128911											
NFASC	23114	broad.mit.edu	37	chr1	204985582	204985582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcatcggccagtacaCggtcaaaaaggacaaggagg	11	11	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204985582	A	A	204985582	3	1	150	1	0	0	0	0	1	0	0	0	10454	536	19	3	4161	3	NFASC	1	204985582	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3939551	204985582	44265039	62	128912											
CR1	1378	broad.mit.edu	37	chr1	207753826	207753826	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggaggtcttactcctatTttttcttttttttttttttc	4	7	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207753826	A	A	207753826	1	1	150	0	1	0	0	0	0	0	0	0	3872	1856	64	5		5	CR1	1	207753826	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	2768244	207753826	41496795	63	128913											
CENPF	1063	broad.mit.edu	37	chr1	214816078	214816078	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggtgaaggagatgcagcTgggcttggaggaggggctcg	20	6	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214816078	C	C	214816078	3	2	150	1	0	0	0	0	1	0	0	0	3261	1580	55	5	4439	5	CENPF	1	214816078	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	7062252	214816078	34434543	64	128914											
USH2A	7399	broad.mit.edu	37	chr1	216144087	216144087	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaattgtggattaatataccAtctagatataatccataact	5	6	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216144087	T	T	216144087	3	4	150	1	0	0	0	0	1	0	0	0	17162	214	8	5	8919	5	USH2A	1	216144087	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	1328009	216144087	33106534	65	128915											
GALNT2	2590	broad.mit.edu	37	chr1	230379104	230379104	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgcccaagccaaggtcctGaccttcctggacagtcactg	10	15	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230379104	T	T	230379104	2	4	150	1	0	0	0	0	0	0	0	1	6275	1277	45	3		3	GALNT2	1	230379104	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	14235017	230379104	18871517	66	128916											
HEATR1	55127	broad.mit.edu	37	chr1	236761366	236761366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctagtaatgtcttcataCtgctacaattcataaataaa	3	9	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236761366	A	A	236761366	1	1	150	0	1	0	0	0	0	0	0	0	7094	580	20	3		3	HEATR1	1	236761366	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	6382262	236761366	12489255	67	128917											
ACTN2	88	broad.mit.edu	37	chr1	236912455	236912455	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgctagaaaccattgatcAgcttcacctggagtttgcca	8	10	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236912455	T	T	236912455	3	4	150	1	0	0	0	0	1	0	0	0	205	188	7	5	1601	5	ACTN2	1	236912455	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	151089	236912455	12338166	68	128918											
FH	2271	broad.mit.edu	37	chr1	241665847	241665847	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaaccatggtcattgcttCacactgagtagggttcacct	9	11	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241665847	A	A	241665847	4	1	150	1	0	0	0	0	0	1	0	0	5932	835	29	3	412	3	FH	1	241665847	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4753392	241665847	7584774	69	128919											
PLD5	200150	broad.mit.edu	37	chr1	242253259	242253259	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttcggctgtttggttggcTgtaaggttttggcatacggt	15	5	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242253259	A	A	242253259	3	1	150	1	0	0	0	0	1	0	0	0	12144	1580	55	5	106	5	PLD5	1	242253259	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	587412	242253259	6997362	70	128920											
AKT3	10000	broad.mit.edu	37	chr1	243715973	243715973	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatatttgaattaatttccAtatctcaatttttaaccaca	1	7	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243715973	T	T	243715973	1	4	150	0	1	0	0	0	0	0	0	0	481	232	8	5		5	AKT3	1	243715973	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	1462714	243715973	5534648	71	128921											
ZNF695	57116	broad.mit.edu	37	chr1	247162722	247162722	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccagacagatgatcagttCtggcttagacatagcaagac	9	10	2	5			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247162722	A	A	247162722	4	1	150	1	0	0	0	0	0	1	0	0	18225	922	32	3	1368	3	ZNF695	1	247162722	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3446749	247162722	2087899	72	128922											
OR2G2	81470	broad.mit.edu	37	chr1	247751824	247751824	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcattctggtttctcgtctgGaacccaagcttcatatgccg	8	12	5	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247751824	T	T	247751824	4	4	150	1	0	0	0	0	0	1	0	0	11092	1175	41	3	165	3	OR2G2	1	247751824	Nonsense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	589102	247751824	1498797	73	128923											
OR2T8	343172	broad.mit.edu	37	chr1	248084469	248084469	+	Missense_Mutation	SNP	C	A	A													attctcctgattcactgggaCcaccggctccacacgcccat							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248084469	A	A	248084469	3	1	150	1	0	0	0	0	1	0	0	0	11124	506	18	3	152	3	OR2T8	1	248084469	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	332645	248084469	1166152	74	128924	558	2									
OR2T8	343172	broad.mit.edu	37	chr1	248084472	248084472	+	Missense_Mutation	SNP	C	A	A													ctcctgattcactgggaccaCcggctccacacgcccatgta							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248084472	A	A	248084472	3	1	150	1	0	0	0	0	1	0	0	0	11124	506	18	3	155	3	OR2T8	1	248084472	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3	248084472	1166149	75	128925	558	2									
OR14C36	127066	broad.mit.edu	37	chr1	248512312	248512312	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgttacagtccctacctCatgtgtcaattccctactgg	6	13	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248512312	G	G	248512312	4	3	150	1	0	0	0	0	0	1	0	0	11040	838	29	4	238	4	OR14C36	1	248512312	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	427840	248512312	738309	76	128926											
SH3BP5L	80851	broad.mit.edu	37	chr1	249106302	249106302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtatcggtgtcgggggCggggccgggccccaggctgc	21	12	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249106302	A	A	249106302	3	1	150	1	0	0	0	0	1	0	0	0	14361	768	27	3	206	3	SH3BP5L	1	249106302	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	593990	249106302	144319	77	128927											
MYT1L	23040	broad.mit.edu	37	chr2	1891332	1891332	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgggatggtcacctccccgGgataccgtctttcttctaga	10	12	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1891332	C	C	1891332	3	2	150	1	0	0	0	0	1	0	0	0	10201	1232	43	4	1026	4	MYT1L	2	1891332	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08		1891332	241308041	78	128928											
OTOF	9381	broad.mit.edu	37	chr2	26781333	26781333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccagctctcagagctggCgtccctctgagacagcggct	13	14	2	2	rs144623968	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26781333	A	A	26781333	1	1	150	0	1	0	0	0	0	0	0	0	11397	783	27	3		3	OTOF	2	26781333	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	24890001	26781333	216418040	79	128929											
DPYSL5	56896	broad.mit.edu	37	chr2	27167645	27167645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacccggcccgtcacccGgcatgggggcatgagggacc	14	16	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27167645	T	T	27167645	3	4	150	1	0	0	0	0	1	0	0	0	4790	1116	39	1	1604	1	DPYSL5	2	27167645	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	386312	27167645	216031728	80	128930											
C2orf28	51374	broad.mit.edu	37	chr2	27439534	27439534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatacaaggaatgcatagaGcaagtcttctcagaaaggag	12	6	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27439534	T	T	27439534	1	4	150	0	1	0	0	0	0	0	0	0	2182	986	34	3		3	C2orf28	2	27439534	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	271889	27439534	215759839	81	128931											
LCLAT1	253558	broad.mit.edu	37	chr2	30682489	30682489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgatatatgcattccaGgggaagggaaattgtggtgc	15	4	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30682489	T	T	30682489	3	4	150	1	0	0	0	0	1	0	0	0	8749	1000	35	2	13	2	LCLAT1	2	30682489	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3242955	30682489	212516884	82	128932											
LTBP1	4052	broad.mit.edu	37	chr2	33477737	33477737	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtcgggctttatctctctGcttcagctgatccccctgtg	9	13	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33477737	A	A	33477737	1	1	150	0	1	0	0	0	0	0	0	0	9160	1334	46	4		4	LTBP1	2	33477737	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	2795248	33477737	209721636	83	128933											
MSH2	4436	broad.mit.edu	37	chr2	47641404	47641404	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgatttttaaattcttaattTtaggttgcagtttcatcact	5	6	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47641404	G	G	47641404	1	3	150	0	1	0	0	0	0	0	0	0	9964	1856	64	5		5	MSH2	2	47641404	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	14163667	47641404	195557969	84	128934											
KCNK12	56660	broad.mit.edu	37	chr2	47748864	47748864	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaagaggttgaagaacaGgatggtcccagcgcagccga	15	9	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47748864	A	A	47748864	2	1	150	1	0	0	0	0	0	0	0	1	8130	991	35	4		4	KCNK12	2	47748864	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	107460	47748864	195450509	85	128935											
NRXN1	9378	broad.mit.edu	37	chr2	50779704	50779705	+	Intron	DEL	AT	-	-													tgctccagcagataaacagcAtagaaaaatgataagattac							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50779705	-	-	50779704	6	5	150	0	1	1	0	1	0	0	0	0	10760	232	8	0		0	NRXN1	2	50779704	Intron	DEL	AT	TCGA-50-5045-01A-01D-1625-08	3030840	50779704	192419669	86	128936											
CLEC4F	165530	broad.mit.edu	37	chr2	71046533	71046533	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaatgttgtctcccagaatTacggcttgcacaggcttcgg	11	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71046533	G	G	71046533	2	3	150	1	0	0	0	0	0	0	0	1	3548	1741	61	5		5	CLEC4F	2	71046533	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	20266829	71046533	172152840	87	128937											
REG1B	5968	broad.mit.edu	37	chr2	79312396	79312396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctcacaagattcatccttCcatttcttgaatcctatggt	4	11	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79312396	A	A	79312396	3	1	150	1	0	0	0	0	1	0	0	0	13319	856	30	3	57	3	REG1B	2	79312396	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	8265863	79312396	163886977	88	128938											
REG1A	5967	broad.mit.edu	37	chr2	79347939	79347939	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttctctgtgttctcctaTagagattgttgatttgcctc	7	11	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79347939	C	C	79347939	1	2	150	0	1	0	0	0	0	0	0	0	13318	1421	49	5		5	REG1A	2	79347939	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	35543	79347939	163851434	89	128939											
CTNNA2	1496	broad.mit.edu	37	chr2	80782895	80782895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacactctggaccggactGcaggggccatcaggggccgg	17	12	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80782895	T	T	80782895	3	4	150	1	0	0	0	0	1	0	0	0	4047	1319	46	3	1452	3	CTNNA2	2	80782895	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1434956	80782895	162416478	90	128940											
SLC9A2	6549	broad.mit.edu	37	chr2	103324831	103324831	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctaaagaccagtctggCtcagagagggaagacagttt	11	9	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103324831	A	A	103324831	2	1	150	1	0	0	0	0	0	0	0	1	14826	784	28	3		3	SLC9A2	2	103324831	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	22541936	103324831	139874542	91	128941											
IL1F9	56300	broad.mit.edu	37	chr2	113742497	113742497	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgccaagactggtaggacCtccacccttgagtctgtggc	12	13	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113742497	A	A	113742497	2	1	150	1	0	0	0	0	0	0	0	1	7727	668	24	2		2	IL1F9	2	113742497	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	10417666	113742497	129456876	92	128942											
CCDC93	54520	broad.mit.edu	37	chr2	118716003	118716003	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgactttccggcgatGtagctgggaggttcctaatt	13	7	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118716003	A	A	118716003	3	1	150	1	0	0	0	0	1	0	0	0	2900	1377	48	4	1004	4	CCDC93	2	118716003	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4973506	118716003	124483370	93	128943											
CCDC74A	90557	broad.mit.edu	37	chr2	132290517	132290517	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctagctttcccaggtgagtGcctggtgcacccctgcccca	11	16	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132290517	A	A	132290517	1	1	150	0	1	0	0	0	0	0	0	0	2875	1334	46	4		4	CCDC74A	2	132290517	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	13574514	132290517	110908856	94	128944											
CCNT2	905	broad.mit.edu	37	chr2	135711220	135711220	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattacatcacagacctgacAaaatttcagatcattcttct	4	10	5	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135711220	G	G	135711220	3	3	150	1	0	0	0	0	1	0	0	0	2965	131	5	5	1229	5	CCNT2	2	135711220	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	3420703	135711220	107488153	95	128945											
LRP1B	53353	broad.mit.edu	37	chr2	141298684	141298684	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctacaataaagagggtGtattggtaacattttatatc	7	6	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141298684	T	T	141298684	1	4	150	0	1	0	0	0	0	0	0	0	9042	1392	48	3		3	LRP1B	2	141298684	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5587464	141298684	101900689	96	128946											
XIRP2	129446	broad.mit.edu	37	chr2	168107435	168107435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttctccacccaggagtcGctctgaacaacttgtcagac	7	16	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168107435	T	T	168107435	3	4	150	1	0	0	0	0	1	0	0	0	17557	1087	38	3	9563	3	XIRP2	2	168107435	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	26808751	168107435	75091938	97	128947											
FASTKD1	79675	broad.mit.edu	37	chr2	170401296	170401296	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctttgaggtggatcatagTtcaatacgctgaatggacga	11	8	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170401296	A	A	170401296	3	1	150	1	0	0	0	0	1	0	0	0	5742	1725	60	5	820	5	FASTKD1	2	170401296	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	2293861	170401296	72798077	98	128948											
RAPGEF4	11069	broad.mit.edu	37	chr2	173679007	173679007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagttttttgggatcctcagGatgctgtgaccatctgtacc	10	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173679007	T	T	173679007	3	4	150	1	0	0	0	0	1	0	0	0	13154	1188	41	3	312	3	RAPGEF4	2	173679007	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3277711	173679007	69520366	99	128949											
TTN	7273	broad.mit.edu	37	chr2	179438859	179438859	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcacctgcagcatttttggcGatcacacggaattcatatgc	9	11	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179438859	C	C	179438859	3	2	150	1	0	0	0	0	1	0	0	0	16861	1048	37	4	36127	4	TTN	2	179438859	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	5759852	179438859	63760514	100	128950											
TTN	7273	broad.mit.edu	37	chr2	179586535	179586535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagacaattatgcaaatatGgtaaggaacaaatattgtca	7	4	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179586535	T	T	179586535	1	4	150	0	1	0	0	0	0	0	0	0	16861	1363	47	2		2	TTN	2	179586535	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	147676	179586535	63612838	101	128951											
ITGA4	3676	broad.mit.edu	37	chr2	182363443	182363443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaacttctgacgtgattaCaggaagcatacaggtgtcca	11	8	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182363443	A	A	182363443	3	1	150	1	0	0	0	0	1	0	0	0	7948	478	17	3	1692	3	ITGA4	2	182363443	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2776908	182363443	60835930	102	128952											
CCDC150	284992	broad.mit.edu	37	chr2	197583345	197583345	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaggctgtggaggacagggAaaacaagaaggcaaggaatc	16	6	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197583345	G	G	197583345	3	3	150	1	0	0	0	0	1	0	0	0	2811	246	9	5	2055	5	CCDC150	2	197583345	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	15219902	197583345	45616028	103	128953											
SATB2	23314	broad.mit.edu	37	chr2	200298174	200298174	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaactcggcgtgttcttctCtgttgtcatattcaagagag	9	9	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200298174	G	G	200298174	3	3	150	1	0	0	0	0	1	0	0	0	13966	913	32	4	2004	4	SATB2	2	200298174	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2714829	200298174	42901199	104	128954											
ORC2L	4999	broad.mit.edu	37	chr2	201785791	201785791	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacaactgaccaatgatttGctggctcttctctcctctca	6	13	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201785791	C	C	201785791	3	2	150	1	0	0	0	0	1	0	0	0	11356	1328	46	4	534	4	ORC2L	2	201785791	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1487617	201785791	41413582	105	128955											
FZD7	8324	broad.mit.edu	37	chr2	202901037	202901037	+	Missense_Mutation	SNP	C	T	T													gtcgggcaagaccctgcagtCgtggcgccgcttctaccaca							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202901037	T	T	202901037	3	4	150	1	0	0	0	0	1	0	0	0	6195	893	31	4	1669	4	FZD7	2	202901037	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1115246	202901037	40298336	106	128956	559	2									
FZD7	8324	broad.mit.edu	37	chr2	202901043	202901043	+	Missense_Mutation	SNP	G	T	T													caagaccctgcagtcgtggcGccgcttctaccacagactta							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202901043	T	T	202901043	3	4	150	1	0	0	0	0	1	0	0	0	6195	1087	38	3	1675	3	FZD7	2	202901043	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	6	202901043	40298330	107	128957	559	2									
NRP2	8828	broad.mit.edu	37	chr2	206608158	206608158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catcatccagggagcccgcgGaggagacagtatcactgctg	13	12	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206608158	T	T	206608158	3	4	150	1	0	0	0	0	1	0	0	0	10756	1174	41	3	1557	3	NRP2	2	206608158	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3707115	206608158	36591215	108	128958											
CRYGC	1420	broad.mit.edu	37	chr2	208994227	208994227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccattgctggtagtcggGgtactcccctcgccgcagca	11	15	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208994227	T	T	208994227	3	4	150	1	0	0	0	0	1	0	0	0	3948	1232	43	2	342	2	CRYGC	2	208994227	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2386069	208994227	34205146	109	128959											
CPS1	1373	broad.mit.edu	37	chr2	211532908	211532908	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttatttatttctaaacAggtggcttgctttggtgaag	9	4	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211532908	G	G	211532908	5	3	150	1	0	0	0	0	0	0	1	0	3855	202	7	5	4157	5	CPS1	2	211532908	Splice_Site	SNP	A	TCGA-50-5045-01A-01D-1625-08	2538681	211532908	31666465	110	128960											
SPAG16	79582	broad.mit.edu	37	chr2	214727154	214727154	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatttcatttattcatattCtgaaaacatttgctattatc	2	8	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214727154	G	G	214727154	1	3	150	0	1	0	0	0	0	0	0	0	15094	928	32	4		4	SPAG16	2	214727154	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	3194246	214727154	28472219	111	128961											
DES	1674	broad.mit.edu	37	chr2	220284872	220284872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaatttggctgccttcCgagcggtgagtgcccttctt	11	11	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220284872	A	A	220284872	2	1	150	1	0	0	0	0	0	0	0	1	4489	644	23	1		1	DES	2	220284872	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	5557718	220284872	22914501	112	128962											
AGAP1	116987	broad.mit.edu	37	chr2	236706382	236706382	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgattgacatggatttctTtttgtctgtgtgtccaccag	9	7	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236706382	G	G	236706382	1	3	150	0	1	0	0	0	0	0	0	0	366	1856	64	5		5	AGAP1	2	236706382	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	16421510	236706382	6492991	113	128963											
PASK	23178	broad.mit.edu	37	chr2	242066664	242066664	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcatcactgcccccatcctCagctgggactggagcttcag	10	15	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242066664	A	A	242066664	4	1	150	1	0	0	0	0	0	1	0	0	11566	835	29	3	2341	3	PASK	2	242066664	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5360282	242066664	1132709	114	128964											
FARP2	9855	broad.mit.edu	37	chr2	242402908	242402908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccttcagcccccacacGggagactcccacaccaactc	5	22	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242402908	T	T	242402908	1	4	150	0	1	0	0	0	0	0	0	0	5734	1131	39	1		1	FARP2	2	242402908	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	336244	242402908	796465	115	128965											
GAL3ST2	64090	broad.mit.edu	37	chr2	242741221	242741221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggggccaggctgaggggCcgccggtcaccaacatcatg	16	12	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242741221	A	A	242741221	3	1	150	1	0	0	0	0	1	0	0	0	6260	739	26	3	155	3	GAL3ST2	2	242741221	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	338313	242741221	458152	116	128966											
CNTN4	152330	broad.mit.edu	37	chr3	2777840	2777840	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccttatgttgttgtttcctGttgttgttcctatttggaag	9	6	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2777840	C	C	2777840	1	2	150	0	1	0	0	0	0	0	0	0	3675	1392	48	4		4	CNTN4	3	2777840	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08		2777840	195244590	117	128967											
ITPR1	3708	broad.mit.edu	37	chr3	4711438	4711438	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgaaccccaccaacgctGacatcctgattgagaccaag	8	14	0	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4711438	T	T	4711438	3	4	150	1	0	0	0	0	1	0	0	0	7990	1290	45	3	2053	3	ITPR1	3	4711438	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1933598	4711438	193310992	118	128968											
FBLN2	2199	broad.mit.edu	37	chr3	13669357	13669357	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagtgtgcgatgggcacGcacacctgccagccgggctt	15	12	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13669357	T	T	13669357	2	4	150	1	0	0	0	0	0	0	0	1	5756	1074	38	3		3	FBLN2	3	13669357	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	8957919	13669357	184353073	119	128969											
KCNH8	131096	broad.mit.edu	37	chr3	19498290	19498290	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaattggagcaaatctatCaattaaggaccaagtgatca	7	6	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19498290	A	A	19498290	4	1	150	1	0	0	0	0	0	1	0	0	8108	838	29	3	1898	3	KCNH8	3	19498290	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5828933	19498290	178524140	120	128970											
LRRC3B	116135	broad.mit.edu	37	chr3	26751822	26751822	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcactatggtgatctcatAtgtggtatattatgtgaggc	11	5	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26751822	G	G	26751822	3	3	150	1	0	0	0	0	1	0	0	0	9083	449	16	5	661	5	LRRC3B	3	26751822	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	7253532	26751822	171270608	121	128971											
STAC	6769	broad.mit.edu	37	chr3	36527655	36527655	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataaggtggaccctgtctacGagaccctccgcttcggcacc	10	15	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36527655	T	T	36527655	4	4	150	1	0	0	0	0	0	1	0	0	15357	1059	37	3	619	3	STAC	3	36527655	Nonsense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	9775833	36527655	161494775	122	128972											
SCN5A	6331	broad.mit.edu	37	chr3	38651363	38651363	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagagctgcaggccgatgaGggcaaagacgctgaggcaga	17	8	0	5			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38651363	A	A	38651363	3	1	150	1	0	0	0	0	1	0	0	0	14035	1000	35	4	5342	4	SCN5A	3	38651363	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2123708	38651363	159371067	123	128973											
SCN11A	11280	broad.mit.edu	37	chr3	38949397	38949397	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaattggacctgtcccccTggacagcaatatggtatcat	10	11	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38949397	A	A	38949397	1	1	150	0	1	0	0	0	0	0	0	0	14026	1595	55	5		5	SCN11A	3	38949397	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	298034	38949397	159073033	124	128974											
ANO10	55129	broad.mit.edu	37	chr3	43474216	43474216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactttaaagccaggagtgCgtgctgaaaacaagaaagag	11	6	0	3	rs144728237		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43474216	A	A	43474216	3	1	150	1	0	0	0	0	1	0	0	0	696	768	27	3	189	3	ANO10	3	43474216	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4524819	43474216	154548214	125	128975											
ALS2CL	259173	broad.mit.edu	37	chr3	46717055	46717055	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaggtcctaggagcagaCgcatgaggcctccctggaca	15	11	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46717055	A	A	46717055	1	1	150	0	1	0	0	0	0	0	0	0	551	551	19	3		3	ALS2CL	3	46717055	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	3242839	46717055	151305375	126	128976											
STAB1	23166	broad.mit.edu	37	chr3	52553399	52553399	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcgctgcactgggagccTgatgatgctcccatcccgag	14	13	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52553399	C	C	52553399	2	2	150	1	0	0	0	0	0	0	0	1	15355	1567	55	5		5	STAB1	3	52553399	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	5836344	52553399	145469031	127	128977											
FAM3D	131177	broad.mit.edu	37	chr3	58639260	58639260	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtagtctgggggtgcccCctctccctgcaattgctggg	14	13	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58639260	A	A	58639260	1	1	150	0	1	0	0	0	0	0	0	0	5610	638	22	2		2	FAM3D	3	58639260	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	6085861	58639260	139383170	128	128978											
CADPS	8618	broad.mit.edu	37	chr3	62388860	62388860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggagctgttgtaccattGctgaaaaaagagacaaaagt	10	6	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62388860	T	T	62388860	3	4	150	1	0	0	0	0	1	0	0	0	2596	1333	46	3	291	3	CADPS	3	62388860	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3749600	62388860	135633570	129	128979											
TMF1	7110	broad.mit.edu	37	chr3	69079029	69079029	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctagctgggcttgaaatCtactgttttcctgtcttaaa	7	8	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69079029	A	A	69079029	3	1	150	1	0	0	0	0	1	0	0	0	16351	913	32	3	778	3	TMF1	3	69079029	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	6690169	69079029	128943401	130	128980											
MITF	4286	broad.mit.edu	37	chr3	70014210	70014210	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacaacaacctcggaactggGactgaggccaaccaagccta	9	13	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70014210	C	C	70014210	2	2	150	1	0	0	0	0	0	0	0	1	9689	1161	41	4		4	MITF	3	70014210	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	935181	70014210	128008220	131	128981											
ROBO2	6092	broad.mit.edu	37	chr3	77147386	77147386	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatccttattcttcttgcgcAtcgtgcacgggcgcaggagt	12	11	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77147386	T	T	77147386	3	4	150	1	0	0	0	0	1	0	0	0	13625	217	8	5	291	5	ROBO2	3	77147386	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	7133176	77147386	120875044	132	128982											
ROBO2	6092	broad.mit.edu	37	chr3	77607136	77607136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctataattctacaaggcccaGccaaccaaacgctggcagtg	8	13	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77607136	T	T	77607136	3	4	150	1	0	0	0	0	1	0	0	0	13625	971	34	3	1309	3	ROBO2	3	77607136	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	459750	77607136	120415294	133	128983											
EPHA3	2042	broad.mit.edu	37	chr3	89462341	89462341	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccacatacatatgaagacCctacccaagctgttcatgag	6	13	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89462341	T	T	89462341	3	4	150	1	0	0	0	0	1	0	0	0	5210	623	22	4	1877	4	EPHA3	3	89462341	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	11855205	89462341	108560089	134	128984											
CCDC52	152185	broad.mit.edu	37	chr3	113172761	113172761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccacagttggaggaagtCgtggagcaggacgagtttga	15	6	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113172761	A	A	113172761	3	1	150	1	0	0	0	0	1	0	0	0	2850	884	31	3	893	3	CCDC52	3	113172761	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	23710420	113172761	84849669	135	128985											
LSAMP	4045	broad.mit.edu	37	chr3	115805271	115805271	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acatccaccttctggattcgGaggctgtattccagagaatg	10	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115805271	A	A	115805271	2	1	150	1	0	0	0	0	0	0	0	1	9135	1161	41	4		4	LSAMP	3	115805271	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	2632510	115805271	82217159	136	128986											
C3orf15	89876	broad.mit.edu	37	chr3	119452372	119452372	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtataatcattatctggaGgacaaaatgcttctagtatg	9	5	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119452372	T	T	119452372	1	4	150	0	1	0	0	0	0	0	0	0	2231	1015	35	2		2	C3orf15	3	119452372	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3647101	119452372	78570058	137	128987											
GTF2E1	2960	broad.mit.edu	37	chr3	120461422	120461422	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcagagttgggcatggaGggcagagccttcaatttcat	12	8	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120461422	A	A	120461422	1	1	150	0	1	0	0	0	0	0	0	0	6921	1015	35	4		4	GTF2E1	3	120461422	5'Flank	SNP	G	TCGA-50-5045-01A-01D-1625-08	1009050	120461422	77561008	138	128988											
POLQ	10721	broad.mit.edu	37	chr3	121206379	121206379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgaaaagcttgtgtcaCtaatagggctgttgtctttg	12	5	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121206379	A	A	121206379	3	1	150	1	0	0	0	0	1	0	0	0	12303	565	20	3	2433	3	POLQ	3	121206379	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	744957	121206379	76816051	139	128989											
GOLGB1	2804	broad.mit.edu	37	chr3	121448017	121448017	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaacttaggaaatatacacTacacccagtcaccatacctt	3	13	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121448017	A	A	121448017	1	1	150	0	1	0	0	0	0	0	0	0	6629	1537	53	5		5	GOLGB1	3	121448017	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	241638	121448017	76574413	140	128990											
CASR	846	broad.mit.edu	37	chr3	121980614	121980614	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacttcagtgaactcatctcCcagtactctgatgaggaaga	9	10	4	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121980614	G	G	121980614	2	3	150	1	0	0	0	0	0	0	0	1	2708	610	22	4		4	CASR	3	121980614	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	532597	121980614	76041816	141	128991											
DIRC2	84925	broad.mit.edu	37	chr3	122545760	122545760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagggccacagccacagCtattgcatcaatgctcagtt	9	11	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122545760	A	A	122545760	3	1	150	1	0	0	0	0	1	0	0	0	4574	797	28	3	561	3	DIRC2	3	122545760	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	565146	122545760	75476670	142	128992											
MCM2	4171	broad.mit.edu	37	chr3	127323593	127323593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccgggaggctggccggGgcctgggccgcatgcgccgt	20	13	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127323593	T	T	127323593	3	4	150	1	0	0	0	0	1	0	0	0	9479	1232	43	2	389	2	MCM2	3	127323593	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4777833	127323593	70698837	143	128993											
COL6A6	131873	broad.mit.edu	37	chr3	130284251	130284251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaacctccgacgggagGgtgtgaccatcttcaccctg	11	13	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130284251	T	T	130284251	3	4	150	1	0	0	0	0	1	0	0	0	3735	1232	43	2	1085	2	COL6A6	3	130284251	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2960658	130284251	67738179	144	128994											
PLS1	5357	broad.mit.edu	37	chr3	142430566	142430566	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaattcatatttttaaatAtaacttatatgtgagtctta	3	3	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142430566	G	G	142430566	1	3	150	0	1	0	0	0	0	0	0	0	12202	464	16	5		5	PLS1	3	142430566	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	12146315	142430566	55591864	145	128995											
SLC9A9	285195	broad.mit.edu	37	chr3	143513923	143513923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgaaaaaagtgtctctgGggagaaaaaaagatatttaa	9	2	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143513923	T	T	143513923	1	4	150	0	1	0	0	0	0	0	0	0	14835	1247	43	2		2	SLC9A9	3	143513923	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1083357	143513923	54508507	146	128996											
ZIC4	84107	broad.mit.edu	37	chr3	147108804	147108804	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtccgacgagggcgacacGagggcagacggtgtagccga	17	11	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147108804	T	T	147108804	2	4	150	1	0	0	0	0	0	0	0	1	17807	1045	37	3		3	ZIC4	3	147108804	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	3594881	147108804	50913626	147	128997											
MED12L	116931	broad.mit.edu	37	chr3	151085856	151085856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttaaataattattccaGgaaatttagcttaataggaa	5	3	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151085856	T	T	151085856	1	4	150	0	1	0	0	0	0	0	0	0	9522	1015	35	2		2	MED12L	3	151085856	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3977052	151085856	46936574	148	128998											
WDR49	151790	broad.mit.edu	37	chr3	167250700	167250700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaacctctggtaatcagGgtgaagaacatggtgagcat	12	7	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167250700	T	T	167250700	3	4	150	1	0	0	0	0	1	0	0	0	17429	1232	43	2	1161	2	WDR49	3	167250700	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	16164844	167250700	30771730	149	128999											
KLHL6	89857	broad.mit.edu	37	chr3	183211747	183211747	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcagagccaccaaaactgTtctccttggaagtaaagtga	9	10	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183211747	C	C	183211747	1	2	150	0	1	0	0	0	0	0	0	0	8464	1740	60	5		5	KLHL6	3	183211747	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	15961047	183211747	14810683	150	129000											
KLHL6	89857	broad.mit.edu	37	chr3	183226293	183226293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggcatccaccatccgcaGgaactgatgaaatagaaagg	10	10	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183226293	T	T	183226293	3	4	150	1	0	0	0	0	1	0	0	0	8464	991	35	2	1422	2	KLHL6	3	183226293	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	14546	183226293	14796137	151	129001											
ECE2	9718	broad.mit.edu	37	chr3	184009097	184009097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggtgggtgggggcaggcCtggatgggcttgttgcccac	20	10	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184009097	A	A	184009097	1	1	150	0	1	0	0	0	0	0	0	0	4930	696	24	2		2	ECE2	3	184009097	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	782804	184009097	14013333	152	129002											
DGKG	1608	broad.mit.edu	37	chr3	185882585	185882585	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatcaagcttttgtgctgcActctccctgccctaaaatcc	5	14	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185882585	T	T	185882585	1	4	150	0	1	0	0	0	0	0	0	0	4509	174	6	5		5	DGKG	3	185882585	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	1873488	185882585	12139845	153	129003											
MASP1	5648	broad.mit.edu	37	chr3	186978605	186978605	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccgccaatgtagttgtgGcagtagtggtcacaggacag	14	8	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186978605	T	T	186978605	4	4	150	1	0	0	0	0	0	1	0	0	9414	1195	42	3	2625	3	MASP1	3	186978605	Nonsense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1096020	186978605	11043825	154	129004											
OPA1	4976	broad.mit.edu	37	chr3	193376632	193376632	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aataaaactactaaaatgatGagatgtaaaacaagttggct	7	4	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193376632	T	T	193376632	1	4	150	0	1	0	0	0	0	0	0	0	10965	1305	45	3		3	OPA1	3	193376632	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	6398027	193376632	4645798	155	129005											
ZDHHC19	131540	broad.mit.edu	37	chr3	195935336	195935336	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgaccagcatggcgccCgagtagaggcacagggacag	16	11	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195935336	A	A	195935336	2	1	150	1	0	0	0	0	0	0	0	1	17735	639	23	1		1	ZDHHC19	3	195935336	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	2558704	195935336	2087094	156	129006											
LYAR	55646	broad.mit.edu	37	chr4	4285410	4285410	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctgcaaacagacacatgCttttccacttgtattttctt	4	10	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4285410	T	T	4285410	2	4	150	1	0	0	0	0	0	0	0	1	9191	796	28	4		4	LYAR	4	4285410	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08		4285410	186868866	157	129007											
ZNF518B	85460	broad.mit.edu	37	chr4	10447452	10447452	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtatacgaaatgtagctGcagtgagaacaaatgaattt	9	5	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10447452	A	A	10447452	2	1	150	1	0	0	0	0	0	0	0	1	18090	1311	46	4		4	ZNF518B	4	10447452	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	6162042	10447452	180706824	158	129008											
FBXL5	26234	broad.mit.edu	37	chr4	15614062	15614062	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaaataatttgacaatTagaagatactaatctataaa	4	3	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15614062	A	A	15614062	1	1	150	0	1	0	0	0	0	0	0	0	5779	1769	61	5		5	FBXL5	4	15614062	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	5166610	15614062	175540214	159	129009											
SLIT2	9353	broad.mit.edu	37	chr4	20487873	20487873	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtggcaagtttcaaccAtatgcctaaacttaggactt	7	9	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20487873	T	T	20487873	3	4	150	1	0	0	0	0	1	0	0	0	14854	217	8	5	616	5	SLIT2	4	20487873	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	4873811	20487873	170666403	160	129010											
KCNIP4	80333	broad.mit.edu	37	chr4	20734431	20734431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaataaaaggcactcacGtgaggctgcacacatgtatg	10	8	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20734431	T	T	20734431	1	4	150	0	1	0	0	0	0	0	0	0	8112	1160	40	3		3	KCNIP4	4	20734431	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	246558	20734431	170419845	161	129011											
CCKAR	886	broad.mit.edu	37	chr4	26483494	26483494	+	Frame_Shift_Del	DEL	G	-	-													aggaggaggatgaaggaaatGggggttcctgagaggcggcg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26483494	-	-	26483494	7	5	150	1	0	1	0	1	0	0	0	0	2908	1335	47	0	237	0	CCKAR	4	26483494	Frame_Shift_Del	DEL	G	TCGA-50-5045-01A-01D-1625-08	5749063	26483494	164670782	162	129012	560	2									
CCKAR	886	broad.mit.edu	37	chr4	26483502	26483502	+	Nonsense_Mutation	SNP	C	A	A													gatgaaggaaatgggggttcCtgagaggcggcgctctgcgg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26483502	A	A	26483502	4	1	150	1	0	0	0	0	0	1	0	0	2908	690	24	2	245	2	CCKAR	4	26483502	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	8	26483502	164670774	163	129013	560	2									
DCAF4L1	285429	broad.mit.edu	37	chr4	41984232	41984232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaccagttggactctcaCgttctgctgtgcttcgaggg	12	11	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41984232	A	A	41984232	3	1	150	1	0	0	0	0	1	0	0	0	4304	535	19	3	425	3	DCAF4L1	4	41984232	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	15500730	41984232	149170044	164	129014											
GABRB1	2560	broad.mit.edu	37	chr4	47033588	47033588	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcatgcgcaggtccattcGggaattactgcccagcagcc	12	14	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47033588	A	A	47033588	1	1	150	0	1	0	0	0	0	0	0	0	6226	1131	39	4		4	GABRB1	4	47033588	5'UTR	SNP	G	TCGA-50-5045-01A-01D-1625-08	5049356	47033588	144120688	165	129015											
COMMD8	54951	broad.mit.edu	37	chr4	47455119	47455119	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattagattctgcagctccTctctactcatttcaatagaa	5	10	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47455119	A	A	47455119	3	1	150	1	0	0	0	0	1	0	0	0	3754	1551	54	5	71	5	COMMD8	4	47455119	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	421531	47455119	143699157	166	129016											
CORIN	10699	broad.mit.edu	37	chr4	47708481	47708481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccgctgctggcagtaccgCcagctctctgctcttcacag	10	16	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47708481	A	A	47708481	1	1	150	0	1	0	0	0	0	0	0	0	3784	754	26	3		3	CORIN	4	47708481	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	253362	47708481	143445795	167	129017											
UGT2B10	7365	broad.mit.edu	37	chr4	69886167	69886167	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaaatcaatcaagttaAaacataactccttcaattca	3	8	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69886167	T	T	69886167	1	4	150	0	1	0	0	0	0	0	0	0	17082	29	1	5		5	UGT2B10	4	69886167	5'Flank	SNP	A	TCGA-50-5045-01A-01D-1625-08	22177686	69886167	121268109	168	129018											
ENAM	10117	broad.mit.edu	37	chr4	71508725	71508725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagggtcaagaaggatgCcatatgaatcagaaactaat	9	5	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71508725	A	A	71508725	3	1	150	1	0	0	0	0	1	0	0	0	5154	739	26	3	1612	3	ENAM	4	71508725	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1622558	71508725	119645551	169	129019											
NPFFR2	10886	broad.mit.edu	37	chr4	73013539	73013539	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagatttaaaaagagctaGtgtgataatcctaactctac	8	6	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73013539	T	T	73013539	1	4	150	0	1	0	0	0	0	0	0	0	10673	1044	36	3		3	NPFFR2	4	73013539	3'UTR	SNP	G	TCGA-50-5045-01A-01D-1625-08	1504814	73013539	118140737	170	129020											
DMP1	1758	broad.mit.edu	37	chr4	88584415	88584415	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggaaattaacagttgatgcCtatcacaacaaacccattgg	7	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88584415	G	G	88584415	2	3	150	1	0	0	0	0	0	0	0	1	4623	668	24	4		4	DMP1	4	88584415	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	15570876	88584415	102569861	171	129021											
GRID2	2895	broad.mit.edu	37	chr4	94006168	94006168	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaacttatgaatcaaggCatcttggccctggtcagctc	10	10	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94006168	G	G	94006168	2	3	150	1	0	0	0	0	0	0	0	1	6838	697	25	4		4	GRID2	4	94006168	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	5421753	94006168	97148108	172	129022											
GRID2	2895	broad.mit.edu	37	chr4	94031995	94031995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatcaataaaatgattaCcactctctttgacaccatga	3	11	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94031995	A	A	94031995	3	1	150	1	0	0	0	0	1	0	0	0	6838	507	18	3	640	3	GRID2	4	94031995	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	25827	94031995	97122281	173	129023											
ADH7	131	broad.mit.edu	37	chr4	100341786	100341786	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtttggtagagtccttGggactgatacactcagtggc	14	7	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100341786	T	T	100341786	2	4	150	1	0	0	0	0	0	0	0	1	313	1335	47	2		2	ADH7	4	100341786	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	6309791	100341786	90812490	174	129024											
DKK2	27123	broad.mit.edu	37	chr4	108124877	108124877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttgcggatagggtaggGggcataatctgtcataatct	13	6	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108124877	T	T	108124877	1	4	150	0	1	0	0	0	0	0	0	0	4585	1247	43	2		2	DKK2	4	108124877	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	7783091	108124877	83029399	175	129025											
PRSS12	8492	broad.mit.edu	37	chr4	119203272	119203273	+	Frame_Shift_Ins	INS	-	TGTG	TGTG													ctggcagctgtccacgcgttINStgtgttcatggaggtttcca							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TGTG	119203273	TGTG	TGTG	119203272	7	5	150	1	0	1	1	0	0	0	0	0	12721	1841	64	0	184	0	PRSS12	4	119203272	Frame_Shift_Ins	INS	-	TCGA-50-5045-01A-01D-1625-08	11078395	119203272	71951004	176	129026											
PDE5A	8654	broad.mit.edu	37	chr4	120527806	120527806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgccccagccatagtaccCgccccagccatagtcccctc	6	20	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120527806	A	A	120527806	1	1	150	0	1	0	0	0	0	0	0	0	11738	667	23	1		1	PDE5A	4	120527806	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1324534	120527806	70626470	177	129027											
KIAA1109	84162	broad.mit.edu	37	chr4	123170560	123170560	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttaaagacaaccagtgtGccatatgtccaaatgtttgt	7	8	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123170560	A	A	123170560	1	1	150	0	1	0	0	0	0	0	0	0	8278	1334	46	4		4	KIAA1109	4	123170560	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	2642754	123170560	67983716	178	129028											
KIAA1109	84162	broad.mit.edu	37	chr4	123239556	123239556	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatcctaacaacaaacttAggaggtagcttgtgttattt	7	6	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123239556	T	T	123239556	1	4	150	0	1	0	0	0	0	0	0	0	8278	435	15	5		5	KIAA1109	4	123239556	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	68996	123239556	67914720	179	129029											
IL21	59067	broad.mit.edu	37	chr4	123542067	123542067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgcattctaatcatgtggcGatcttgaccttgggagcttg	11	9	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123542067	T	T	123542067	3	4	150	1	0	0	0	0	1	0	0	0	7740	1058	37	3	408	3	IL21	4	123542067	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	302511	123542067	67612209	180	129030											
ANKRD50	57182	broad.mit.edu	37	chr4	125591732	125591732	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgttggatttgttttcCagtaatatttgaacacaatc	6	6	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125591732	G	G	125591732	2	3	150	1	0	0	0	0	0	0	0	1	677	581	21	4		4	ANKRD50	4	125591732	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	2049665	125591732	65562544	181	129031											
ANKRD50	57182	broad.mit.edu	37	chr4	125599742	125599742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaggagcaaatgcaacaCgcagatgttcaactgcatac	9	9	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125599742	A	A	125599742	1	1	150	0	1	0	0	0	0	0	0	0	677	551	19	3		3	ANKRD50	4	125599742	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	8010	125599742	65554534	182	129032											
MAML3	55534	broad.mit.edu	37	chr4	140640518	140640518	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcaagctcctgcatccactCgtcccctggcccgcctttga	7	18	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140640518	A	A	140640518	4	1	150	1	0	0	0	0	0	1	0	0	9299	893	31	3	44	3	MAML3	4	140640518	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	15040776	140640518	50513758	183	129033											
LRAT	9227	broad.mit.edu	37	chr4	155670427	155670427	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtgattaggaatcacGcaaagtgcttactgtgtaag	10	5	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155670427	T	T	155670427	1	4	150	0	1	0	0	0	0	0	0	0	9017	1102	38	3		3	LRAT	4	155670427	3'UTR	SNP	G	TCGA-50-5045-01A-01D-1625-08	15029909	155670427	35483849	184	129034											
NPY1R	4886	broad.mit.edu	37	chr4	164246588	164246588	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cataatcatcatcccgagacCggaaatcacaaaagttgaag	7	10	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164246588	G	G	164246588	3	3	150	1	0	0	0	0	1	0	0	0	10703	652	23	4	136	4	NPY1R	4	164246588	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	8576161	164246588	26907688	185	129035											
NPY1R	4886	broad.mit.edu	37	chr4	164247685	164247685	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgaatgattttcaacctGggaaaataatgttgaattca	8	5	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164247685	A	A	164247685	4	1	150	1	0	0	0	0	0	1	0	0	10703	1357	47	4	1140	4	NPY1R	4	164247685	Nonsense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1097	164247685	26906591	186	129036											
MARCH1	55016	broad.mit.edu	37	chr4	165110151	165110151	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcctatggcagctgctattGgttatggcctggataagagg	14	7	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165110151	C	C	165110151	1	2	150	0	1	0	0	0	0	0	0	0	9390	1363	47	4		4	MARCH1	4	165110151	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	862466	165110151	26044125	187	129037											
CPE	1363	broad.mit.edu	37	chr4	166405846	166405846	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgatttagatttagagaatCttcaatcgtcctccatcatt	6	8	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166405846	A	A	166405846	1	1	150	0	1	0	0	0	0	0	0	0	3831	928	32	3		3	CPE	4	166405846	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1295695	166405846	24748430	188	129038											
DDX60	55601	broad.mit.edu	37	chr4	169158468	169158468	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctgacagagatcatggaaGagtccatttacaagaaaact	10	7	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169158468	C	C	169158468	2	2	150	1	0	0	0	0	0	0	0	1	4411	929	33	4		4	DDX60	4	169158468	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	2752622	169158468	21995808	189	129039											
DDX60L	91351	broad.mit.edu	37	chr4	169374381	169374381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagccacacagaggcaaCgcagtctgcagaaatcttcc	9	12	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169374381	A	A	169374381	3	1	150	1	0	0	0	0	1	0	0	0	4412	536	19	3	4354	3	DDX60L	4	169374381	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	215913	169374381	21779895	190	129040											
SNX25	83891	broad.mit.edu	37	chr4	186168395	186168395	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctttgattttttttttttAtgtgatttattcattcagta	4	4	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186168395	T	T	186168395	1	4	150	0	1	0	0	0	0	0	0	0	15010	464	16	5		5	SNX25	4	186168395	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	16794014	186168395	4985881	191	129041											
FAT1	2195	broad.mit.edu	37	chr4	187540319	187540319	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacatgaacctgggtggaaCttctaaaaactccatcagac	7	10	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187540319	G	G	187540319	3	3	150	1	0	0	0	0	1	0	0	0	5746	565	20	4	6417	4	FAT1	4	187540319	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1371924	187540319	3613957	192	129042											
NSUN2	54888	broad.mit.edu	37	chr5	6623302	6623302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaacaagctgcccgccccCacgtttctagttgctatatg	9	13	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6623302	A	A	6623302	1	1	150	0	1	0	0	0	0	0	0	0	10773	609	21	2		2	NSUN2	5	6623302	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08		6623302	174291958	193	129043											
CTNND2	1501	broad.mit.edu	37	chr5	11565013	11565013	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatcacgatttacttgcagGggcaactcaaagcacagaca	8	11	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11565013	C	C	11565013	1	2	150	0	1	0	0	0	0	0	0	0	4054	1247	43	4		4	CTNND2	5	11565013	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	4941711	11565013	169350247	194	129044											
MARCH11	441061	broad.mit.edu	37	chr5	16067903	16067903	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcatgaacaatgagacCtaaaatttgagaaaataaaa	5	6	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16067903	G	G	16067903	1	3	150	0	1	0	0	0	0	0	0	0	9392	695	24	4		4	MARCH11	5	16067903	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	4502890	16067903	164847357	195	129045											
PRDM9	56979	broad.mit.edu	37	chr5	23521388	23521388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactttgcataggcctgGgcttaagctggactcaactg	13	9	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23521388	T	T	23521388	1	4	150	0	1	0	0	0	0	0	0	0	12569	1247	43	2		2	PRDM9	5	23521388	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	7453485	23521388	157393872	196	129046											
CDH10	1008	broad.mit.edu	37	chr5	24488134	24488134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgccgatatcaaaggCctgggtgtcctcctctccac	11	14	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24488134	A	A	24488134	3	1	150	1	0	0	0	0	1	0	0	0	3126	739	26	3	365	3	CDH10	5	24488134	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	966746	24488134	156427126	197	129047											
CDH10	1008	broad.mit.edu	37	chr5	24535845	24535845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagagaaatagggctgccCttgaagtatgctgtaaatga	11	7	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24535845	A	A	24535845	3	1	150	1	0	0	0	0	1	0	0	0	3126	681	24	2	1789	2	CDH10	5	24535845	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	47711	24535845	156379415	198	129048											
CDH10	1008	broad.mit.edu	37	chr5	24578483	24578483	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaagcatcttcatcttcttCatctagctgtagatgaccag	7	10	6	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24578483	A	A	24578483	1	1	150	0	1	0	0	0	0	0	0	0	3126	841	29	3		3	CDH10	5	24578483	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	42638	24578483	156336777	199	129049											
CDH6	1004	broad.mit.edu	37	chr5	31323550	31323551	+	3'UTR	DNP	CC	AT	AT													tggctgcagtccgtgtggatCcaatgttagagacttttttc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	31323551	AT	AT	31323550	1	1	150	0	1	0	0	0	0	0	0	0	3144	870	30	3		3	CDH6	5	31323550	3'UTR	DNP	CC	TCGA-50-5045-01A-01D-1625-08	6745067	31323550	149591710	200	129050											
SPEF2	79925	broad.mit.edu	37	chr5	35753908	35753908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcacttcccttcacagCctcattcctcagtccttcat	4	18	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35753908	A	A	35753908	1	1	150	0	1	0	0	0	0	0	0	0	15153	754	26	3		3	SPEF2	5	35753908	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	4430358	35753908	145161352	201	129051											
EGFLAM	133584	broad.mit.edu	37	chr5	38337618	38337619	+	Intron	INS	-	T	T													caatctcttttgtttgggggINScaggcaaggtagggcctcct							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38337619	T	T	38337618	6	5	150	0	1	1	1	0	0	0	0	0	5006	1218	42	0		0	EGFLAM	5	38337618	Intron	INS	-	TCGA-50-5045-01A-01D-1625-08	2583710	38337618	142577642	202	129052											
FYB	2533	broad.mit.edu	37	chr5	39153583	39153583	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtttaatgtttctgggaGgtaggcttgggactggtggt	18	3	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39153583	A	A	39153583	3	1	150	1	0	0	0	0	1	0	0	0	6184	1000	35	4	1298	4	FYB	5	39153583	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	815965	39153583	141761677	203	129053											
C6	729	broad.mit.edu	37	chr5	41149252	41149252	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaaaggaattatttttgAttaaggataggttattttta	8	0	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41149252	G	G	41149252	1	3	150	0	1	0	0	0	0	0	0	0	2338	348	12	5		5	C6	5	41149252	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	1995669	41149252	139766008	204	129054											
C6	729	broad.mit.edu	37	chr5	41149695	41149695	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agttttcttttgcctgttttCcccaccccactccaagccct	4	17	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41149695	G	G	41149695	1	3	150	0	1	0	0	0	0	0	0	0	2338	870	30	4		4	C6	5	41149695	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	443	41149695	139765565	205	129055											
IPO11	51194	broad.mit.edu	37	chr5	61781303	61781303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagggtaagtattaattGcaagaaaaattgatagggga	12	1	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61781303	T	T	61781303	1	4	150	0	1	0	0	0	0	0	0	0	7863	1334	46	3		3	IPO11	5	61781303	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	20631608	61781303	119133957	206	129056											
UTP15	84135	broad.mit.edu	37	chr5	72875739	72875739	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attggtcagtcccctgtagtTgataaaaagtttttactact	7	7	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72875739	A	A	72875739	2	1	150	1	0	0	0	0	0	0	0	1	17224	1799	63	5		5	UTP15	5	72875739	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	11094436	72875739	108039521	207	129057											
LOC153328	153328	broad.mit.edu	37	chr5	135177952	135177952	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgccttccttggtgcaTgggccagtgcctagcacatt	10	13	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135177952	G	G	135177952	1	3	150	0	1	0	0	0	0	0	0	0	8949	1479	51	5		5	LOC153328	5	135177952	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	62302213	135177952	45737308	208	129058											
SPOCK1	6695	broad.mit.edu	37	chr5	136314510	136314510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacccaccactgccaaaatCccctgaggtttcctgctcct	7	17	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136314510	A	A	136314510	3	1	150	1	0	0	0	0	1	0	0	0	15197	855	30	3	170	3	SPOCK1	5	136314510	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1136558	136314510	44600750	209	129059											
PSD2	84249	broad.mit.edu	37	chr5	139218115	139218115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctagaggtactggtgcCttctcagtgccaggcccagt	11	13	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139218115	A	A	139218115	1	1	150	0	1	0	0	0	0	0	0	0	12753	696	24	2		2	PSD2	5	139218115	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2903605	139218115	41697145	210	129060											
PCDHA4	56144	broad.mit.edu	37	chr5	140188799	140188799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggagagtggacaggcgcCaaaggcctcctcacgggcgt	16	11	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140188799	A	A	140188799	3	1	150	1	0	0	0	0	1	0	0	0	11620	594	21	2	2029	2	PCDHA4	5	140188799	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	970684	140188799	40726461	211	129061											
PCDHA7	56141	broad.mit.edu	37	chr5	140215087	140215087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtcatcacattgattagCgtgtttgaccgagattttgg	10	8	2	3	rs139807581		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215087	A	A	140215087	3	1	150	1	0	0	0	0	1	0	0	0	11623	767	27	3	1121	3	PCDHA7	5	140215087	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	26288	140215087	40700173	212	129062											
PCDHA13	56136	broad.mit.edu	37	chr5	140263288	140263288	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacatcttcacggtgtctGctcaggacgcggacgcacag	12	14	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140263288	A	A	140263288	3	1	150	1	0	0	0	0	1	0	0	0	11617	1319	46	4	1437	4	PCDHA13	5	140263288	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	48201	140263288	40651972	213	129063											
PCDHB16	57717	broad.mit.edu	37	chr5	140564381	140564381	+	Frame_Shift_Del	DEL	C	-	-													gggaccctgtcccagagctaCcaatacgaggtgtgtctgac							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140564381	-	-	140564381	7	5	150	1	0	1	0	1	0	0	0	0	11635	518	18	0	2249	0	PCDHB16	5	140564381	Frame_Shift_Del	DEL	C	TCGA-50-5045-01A-01D-1625-08	301093	140564381	40350879	214	129064											
PCDHB10	56126	broad.mit.edu	37	chr5	140573085	140573085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttacaaaataaatatacaGgcaatggacggtggaggcct	10	7	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140573085	T	T	140573085	3	4	150	1	0	0	0	0	1	0	0	0	11629	991	35	2	962	2	PCDHB10	5	140573085	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	8704	140573085	40342175	215	129065											
PCDHB12	56124	broad.mit.edu	37	chr5	140589702	140589702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttggaaacagagagacCgctggacagagagagcagag	14	8	0	5			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140589702	A	A	140589702	3	1	150	1	0	0	0	0	1	0	0	0	11631	652	23	1	1225	1	PCDHB12	5	140589702	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	16617	140589702	40325558	216	129066											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719979	140719979	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacggcccatgaccccgacAgcaacgacaatgctcatgta	9	14	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140719979	C	C	140719979	3	2	150	1	0	0	0	0	1	0	0	0	11648	188	7	5	1443	5	PCDHGA2	5	140719979	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	130277	140719979	40195281	217	129067											
ANXA6	309	broad.mit.edu	37	chr5	150484921	150484921	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaggctgtgaacccagacTctggaccggcctcccccatc	10	17	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150484921	C	C	150484921	1	2	150	0	1	0	0	0	0	0	0	0	722	1566	54	5		5	ANXA6	5	150484921	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	9764942	150484921	30430339	218	129068											
NIPAL4	348938	broad.mit.edu	37	chr5	156899961	156899961	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaaagtatttataatccAttcctgaagcttggaatatg	6	8	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156899961	G	G	156899961	3	3	150	1	0	0	0	0	1	0	0	0	10522	217	8	5	1416	5	NIPAL4	5	156899961	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	6415040	156899961	24015299	219	129069											
SLIT3	6586	broad.mit.edu	37	chr5	168176669	168176669	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaagggtgcttagcctcCatccttctactgtgggagcg	13	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168176669	T	T	168176669	1	4	150	0	1	0	0	0	0	0	0	0	14855	609	21	4		4	SLIT3	5	168176669	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	11276708	168176669	12738591	220	129070											
F12	2161	broad.mit.edu	37	chr5	176832946	176832946	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccaggcccctgctccaactCctctgcgtagtcttaccagg	8	18	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176832946	T	T	176832946	1	4	150	0	1	0	0	0	0	0	0	0	5382	870	30	4		4	F12	5	176832946	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	8656277	176832946	4082314	221	129071											
FLT4	2324	broad.mit.edu	37	chr5	180048747	180048747	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgcagtcgagcagaagCgggttcccgtgcgcatcgtg	14	11	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180048747	A	A	180048747	2	1	150	1	0	0	0	0	0	0	0	1	6002	755	27	3		3	FLT4	5	180048747	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	3215801	180048747	866513	222	129072											
OR2Y1	134083	broad.mit.edu	37	chr5	180166828	180166828	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcaggagctggggcacGgtgctggtggtgaagcagag	19	6	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180166828	T	T	180166828	2	4	150	1	0	0	0	0	0	0	0	1	11129	1103	39	1		1	OR2Y1	5	180166828	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	118081	180166828	748432	223	129073											
MAK	4117	broad.mit.edu	37	chr6	10808944	10808944	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattcaattctgtgttttaAatattcaatatggaacttcc	4	6	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10808944	T	T	10808944	1	4	150	0	1	0	0	0	0	0	0	0	9289	29	1	5		5	MAK	6	10808944	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08		10808944	160306123	224	129074											
RNF144B	255488	broad.mit.edu	37	chr6	18457534	18457534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgttgcaaggatgcttgGcatgcagaggtctcctgtag	14	8	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18457534	T	T	18457534	3	4	150	1	0	0	0	0	1	0	0	0	13557	1212	42	3	494	3	RNF144B	6	18457534	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	7648590	18457534	152657533	225	129075											
OR2H1	26716	broad.mit.edu	37	chr6	29429977	29429977	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgtgctggcagctggcatCtgtggcctgggttatgagtc	15	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29429977	A	A	29429977	3	1	150	1	0	0	0	0	1	0	0	0	11095	913	32	3	433	3	OR2H1	6	29429977	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	10972443	29429977	141685090	226	129076											
OR2H2	7932	broad.mit.edu	37	chr6	29555748	29555748	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaagctccacaccgggCttcctccttctgggcttctc	7	17	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29555748	A	A	29555748	2	1	150	1	0	0	0	0	0	0	0	1	11096	784	28	3		3	OR2H2	6	29555748	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	125771	29555748	141559319	227	129077											
OR2H2	7932	broad.mit.edu	37	chr6	29556131	29556131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaccatcatccacccccGcctgtgctggcagctggcat	9	18	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29556131	T	T	29556131	3	4	150	1	0	0	0	0	1	0	0	0	11096	1087	38	3	412	3	OR2H2	6	29556131	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	383	29556131	141558936	228	129078											
TNXB	7148	broad.mit.edu	37	chr6	32029540	32029540	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatggcagggtccctggggGatgtgcttacgtcgtgggga	20	7	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32029540	A	A	32029540	1	1	150	0	1	0	0	0	0	0	0	0	16469	1189	41	4		4	TNXB	6	32029540	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	2473409	32029540	139085527	229	129079											
COL11A2	1302	broad.mit.edu	37	chr6	33134818	33134818	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgagggtgatgggagagacAcctggccacgtgtctgtctg	17	9	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33134818	T	T	33134818	1	4	150	0	1	0	0	0	0	0	0	0	3700	174	6	5		5	COL11A2	6	33134818	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	1105278	33134818	137980249	230	129080											
ZBTB9	221504	broad.mit.edu	37	chr6	33423557	33423557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgatgatgaggaccaggGgtcagccacactctctcaga	12	10	3	5			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33423557	T	T	33423557	3	4	150	1	0	0	0	0	1	0	0	0	17684	1232	43	2	682	2	ZBTB9	6	33423557	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	288739	33423557	137691510	231	129081											
ZNF76	7629	broad.mit.edu	37	chr6	35260577	35260577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgagggtaaggggagtgGgcagagggtgagagtgggga	23	2	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35260577	T	T	35260577	1	4	150	0	1	0	0	0	0	0	0	0	18264	1247	43	2		2	ZNF76	6	35260577	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1837020	35260577	135854490	232	129082											
DNAH8	1769	broad.mit.edu	37	chr6	38858602	38858602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagccctagatcacacctcGtggctcattaagttatcata	6	12	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38858602	T	T	38858602	1	4	150	0	1	0	0	0	0	0	0	0	4647	1160	40	3		3	DNAH8	6	38858602	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3598025	38858602	132256465	233	129083											
TTBK1	84630	broad.mit.edu	37	chr6	43251506	43251506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaccccctcagagatgGccacaaactcactgcccaat	8	15	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43251506	T	T	43251506	3	4	150	1	0	0	0	0	1	0	0	0	16802	1203	42	3	3078	3	TTBK1	6	43251506	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4392904	43251506	127863561	234	129084											
RHAG	6005	broad.mit.edu	37	chr6	49604607	49604607	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggactgctctgtgtgtGgaatttgactgcatgttcaa	11	7	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49604607	T	T	49604607	1	4	150	0	1	0	0	0	0	0	0	0	13424	1363	47	2		2	RHAG	6	49604607	5'Flank	SNP	G	TCGA-50-5045-01A-01D-1625-08	6353101	49604607	121510460	235	129085											
PGK2	5232	broad.mit.edu	37	chr6	49754648	49754648	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcccagcaaggatttgaGctcaacagcaacaggtgcta	10	11	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49754648	T	T	49754648	3	4	150	1	0	0	0	0	1	0	0	0	11886	971	34	3	1004	3	PGK2	6	49754648	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	150041	49754648	121360419	236	129086											
PGK2	5232	broad.mit.edu	37	chr6	49754901	49754901	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacttcttagaaagagacatCttgacaatataaagacatag	6	6	2	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49754901	G	G	49754901	1	3	150	0	1	0	0	0	0	0	0	0	11886	928	32	4		4	PGK2	6	49754901	5'UTR	SNP	C	TCGA-50-5045-01A-01D-1625-08	253	49754901	121360166	237	129087											
PKHD1	5314	broad.mit.edu	37	chr6	51889434	51889434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccagggcagatgaggccCaccctctgatgcagtcatag	11	13	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51889434	A	A	51889434	3	1	150	1	0	0	0	0	1	0	0	0	12066	595	21	2	7233	2	PKHD1	6	51889434	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2134533	51889434	119225633	238	129088											
C6orf142	90523	broad.mit.edu	37	chr6	54095509	54095509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctttcttcttccccacCaggatgtaacagtccctccc	5	17	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54095509	A	A	54095509	1	1	150	0	1	0	0	0	0	0	0	0	2356	609	21	2		2	C6orf142	6	54095509	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2206075	54095509	117019558	239	129089											
DST	667	broad.mit.edu	37	chr6	56417869	56417869	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctcatctgtaacaacttCtttatctatctcacagacac	2	12	5	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56417869	A	A	56417869	4	1	150	1	0	0	0	0	0	1	0	0	4823	922	32	3	7835	3	DST	6	56417869	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2322360	56417869	114697198	240	129090											
BAI3	577	broad.mit.edu	37	chr6	70092727	70092727	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcttttttgcagaaggTcatgcatacaaggaagaggc	11	6	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70092727	G	G	70092727	3	3	150	1	0	0	0	0	1	0	0	0	1305	1667	58	5	4394	5	BAI3	6	70092727	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	13674858	70092727	101022340	241	129091											
SENP6	26054	broad.mit.edu	37	chr6	76425093	76425093	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaatacgcatttaattgtAttttcagaatccaattctca	3	8	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76425093	T	T	76425093	1	4	150	0	1	0	0	0	0	0	0	0	14163	464	16	5		5	SENP6	6	76425093	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	6332366	76425093	94689974	242	129092											
IMPG1	3617	broad.mit.edu	37	chr6	76744341	76744341	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgtttaggctcacctgCtggagaagatccaggtgctc	14	9	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76744341	T	T	76744341	2	4	150	1	0	0	0	0	0	0	0	1	7798	796	28	4		4	IMPG1	6	76744341	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	319248	76744341	94370726	243	129093											
HTR1B	3351	broad.mit.edu	37	chr6	78172323	78172323	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgagttaatagaggtgacCgaggacgtggacccggggga	18	8	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78172323	A	A	78172323	2	1	150	1	0	0	0	0	0	0	0	1	7507	639	23	1		1	HTR1B	6	78172323	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	1427982	78172323	92942744	244	129094											
SPACA1	81833	broad.mit.edu	37	chr6	88773893	88773893	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaccataggagtcattatCtgtgtatttataattttctt	6	6	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88773893	T	T	88773893	2	4	150	1	0	0	0	0	0	0	0	1	15086	903	32	4		4	SPACA1	6	88773893	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	10601570	88773893	82341174	245	129095											
EPHA7	2045	broad.mit.edu	37	chr6	93979434	93979434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgcaaccagacaatttgaCagccaactgtttcaatttaa	5	9	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93979434	A	A	93979434	1	1	150	0	1	0	0	0	0	0	0	0	5214	493	17	3		3	EPHA7	6	93979434	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	5205541	93979434	77135633	246	129096											
COQ3	51805	broad.mit.edu	37	chr6	99824144	99824144	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatcaaaaatgaaacaagaTtaaccatgaggtgataaata	6	4	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99824144	A	A	99824144	1	1	150	0	1	0	0	0	0	0	0	0	3778	1508	52	5		5	COQ3	6	99824144	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	5844710	99824144	71290923	247	129097											
PREP	5550	broad.mit.edu	37	chr6	105726117	105726117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttccccgccccgtggcCcgccttggtgtccacgtgga	14	17	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105726117	A	A	105726117	3	1	150	1	0	0	0	0	1	0	0	0	12580	623	22	2	101	2	PREP	6	105726117	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5901973	105726117	65388950	248	129098											
AIM1	202	broad.mit.edu	37	chr6	106968952	106968952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacagcccacgactgaggGtgccccgccctgtggtttga	13	14	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106968952	T	T	106968952	3	4	150	1	0	0	0	0	1	0	0	0	430	1261	44	3	2651	3	AIM1	6	106968952	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1242835	106968952	64146115	249	129099											
FIG4	9896	broad.mit.edu	37	chr6	110059538	110059538	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatttttcaggggtatttggGatctgtagtgagccttatat	11	4	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110059538	T	T	110059538	2	4	150	1	0	0	0	0	0	0	0	1	5945	1161	41	3		3	FIG4	6	110059538	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	3090586	110059538	61055529	250	129100											
WISP3	8838	broad.mit.edu	37	chr6	112385912	112385912	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taattggaggtctagactatCacagatcatggcttctttgg	10	7	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112385912	A	A	112385912	1	1	150	0	1	0	0	0	0	0	0	0	17501	841	29	3		3	WISP3	6	112385912	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2326374	112385912	58729155	251	129101											
RFX6	222546	broad.mit.edu	37	chr6	117248319	117248319	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaagtgtgggcccagtacTgtcagctccatcacactgct	9	15	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117248319	A	A	117248319	3	1	150	1	0	0	0	0	1	0	0	0	13375	1580	55	5	2081	5	RFX6	6	117248319	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	4862407	117248319	53866748	252	129102											
C6orf58	352999	broad.mit.edu	37	chr6	127899809	127899809	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcgtataataaatacgaCtgtgcatcctctctcctcca	5	12	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127899809	A	A	127899809	1	1	150	0	1	0	0	0	0	0	0	0	2391	580	20	3		3	C6orf58	6	127899809	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	10651490	127899809	43215258	253	129103											
LAMA2	3908	broad.mit.edu	37	chr6	129475688	129475688	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagctgaagaatgctattatGatgaaaatgttgccagaaga	10	4	0	6			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129475688	T	T	129475688	3	4	150	1	0	0	0	0	1	0	0	0	8678	1290	45	3	1096	3	LAMA2	6	129475688	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1575879	129475688	41639379	254	129104											
ENPP3	5169	broad.mit.edu	37	chr6	132067981	132067981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacagctcacattgcccGggtccgtgatgtagaacttc	9	11	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132067981	T	T	132067981	3	4	150	1	0	0	0	0	1	0	0	0	5173	1116	39	1	2611	1	ENPP3	6	132067981	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2592293	132067981	39047086	255	129105											
MOXD1	26002	broad.mit.edu	37	chr6	132637011	132637011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcatacagttccttccaatAttaaaatttaatacatctta	2	8	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132637011	T	T	132637011	1	4	150	0	1	0	0	0	0	0	0	0	9814	464	16	5		5	MOXD1	6	132637011	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	569030	132637011	38478056	256	129106											
AHI1	54806	broad.mit.edu	37	chr6	135732737	135732737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcaaaagcataatcaagCcctaaaactgtagcattcaa	5	9	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135732737	A	A	135732737	1	1	150	0	1	0	0	0	0	0	0	0	413	754	26	3		3	AHI1	6	135732737	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	3095726	135732737	35382330	257	129107											
SYNJ2	8871	broad.mit.edu	37	chr6	158492670	158492670	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtgaagacgggcatgggGggcaaggcggggaacaaggg	21	6	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158492670	A	A	158492670	2	1	150	1	0	0	0	0	0	0	0	1	15572	1219	43	4		4	SYNJ2	6	158492670	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	22759933	158492670	12622397	258	129108											
SERAC1	84947	broad.mit.edu	37	chr6	158541400	158541400	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaataagttaaaaatttgaGgcctctaggcttcacatttc	7	7	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158541400	C	C	158541400	1	2	150	0	1	0	0	0	0	0	0	0	14187	1015	35	4		4	SERAC1	6	158541400	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	48730	158541400	12573667	259	129109											
PLG	5340	broad.mit.edu	37	chr6	161134171	161134171	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgaaggtcaggagtggttCtagaaaatgttttcatttct	11	4	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161134171	G	G	161134171	1	3	150	0	1	0	0	0	0	0	0	0	12181	928	32	4		4	PLG	6	161134171	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2592771	161134171	9980896	260	129110											
QKI	9444	broad.mit.edu	37	chr6	163836392	163836392	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgtctccagggccccggccCcggcccgacccccgccgggg	15	22	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163836392	G	G	163836392	1	3	150	0	1	0	0	0	0	0	0	0	12981	638	22	4		4	QKI	6	163836392	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2702221	163836392	7278675	261	129111											
C6orf120	387263	broad.mit.edu	37	chr6	170102858	170102858	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcggccacctgcggcccGgacgccgtgtccatccccgc	11	20	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170102858	A	A	170102858	2	1	150	1	0	0	0	0	0	0	0	1	2347	1103	39	4		4	C6orf120	6	170102858	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	6266466	170102858	1012209	262	129112											
KIAA0415	9907	broad.mit.edu	37	chr7	4825961	4825961	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagcagttccacagccccAtgctggcctttgaattcatc	9	13	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4825961	T	T	4825961	3	4	150	1	0	0	0	0	1	0	0	0	8245	217	8	5	1251	5	KIAA0415	7	4825961	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08		4825961	154312702	263	129113											
THSD7A	221981	broad.mit.edu	37	chr7	11581224	11581224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccagagcctccagtgggCtcattggtaatgcgccgctt	11	14	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11581224	A	A	11581224	3	1	150	1	0	0	0	0	1	0	0	0	16002	796	28	3	3417	3	THSD7A	7	11581224	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	6755263	11581224	147557439	264	129114											
DGKB	1607	broad.mit.edu	37	chr7	14722128	14722128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagagagtatgatatacaCgtcttcagtgtgggtgaatg	12	5	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14722128	A	A	14722128	1	1	150	0	1	0	0	0	0	0	0	0	4506	551	19	3		3	DGKB	7	14722128	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	3140904	14722128	144416535	265	129115											
FERD3L	222894	broad.mit.edu	37	chr7	19184711	19184711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcacccttttcctcttgGggcggcctaatagggagaca	11	11	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19184711	T	T	19184711	3	4	150	1	0	0	0	0	1	0	0	0	5873	1232	43	2	229	2	FERD3L	7	19184711	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4462583	19184711	139953952	266	129116											
DNAH11	8701	broad.mit.edu	37	chr7	21813492	21813492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagacacaactataccaccCcaaagagttttctagaacaa	5	11	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21813492	A	A	21813492	3	1	150	1	0	0	0	0	1	0	0	0	4639	623	22	2	9455	2	DNAH11	7	21813492	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2628781	21813492	137325171	267	129117											
NUPL2	11097	broad.mit.edu	37	chr7	23239964	23239964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccagcttttggatttgGgaagcctgaagtcacatcgg	12	9	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23239964	T	T	23239964	3	4	150	1	0	0	0	0	1	0	0	0	10870	1232	43	2	898	2	NUPL2	7	23239964	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1426472	23239964	135898699	268	129118											
EVX1	2128	broad.mit.edu	37	chr7	27283045	27283045	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcaccccggactgcgcCaccgggaacgccgagtacca	12	17	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27283045	A	A	27283045	2	1	150	1	0	0	0	0	0	0	0	1	5336	581	21	2		2	EVX1	7	27283045	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	4043081	27283045	131855618	269	129119											
CHN2	1124	broad.mit.edu	37	chr7	29535591	29535591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacgttccgaggcccacaCtggtgtgaatattgtgccaa	10	12	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29535591	A	A	29535591	3	1	150	1	0	0	0	0	1	0	0	0	3394	564	20	3	876	3	CHN2	7	29535591	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2252546	29535591	129603072	270	129120											
GHRHR	2692	broad.mit.edu	37	chr7	31014554	31014554	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccacagtgaaggggacttTccaacaacggccttctttcc	8	14	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31014554	A	A	31014554	1	1	150	0	1	0	0	0	0	0	0	0	6437	1798	62	5		5	GHRHR	7	31014554	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	1478963	31014554	128124109	271	129121											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31127290	31127291	+	Missense_Mutation	DNP	CC	AA	AA													tgtggtgggtgatcaaaggcCctgtggttggctctatcatg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31127291	AA	AA	31127290	3	1	150	1	0	0	0	0	1	0	0	0	303	623	22	2	976	2	ADCYAP1R1	7	31127290	Missense_Mutation	DNP	CC	TCGA-50-5045-01A-01D-1625-08	112736	31127290	128011373	272	129122											
FKBP9	11328	broad.mit.edu	37	chr7	33014721	33014721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccacattcaccttgggaGcatcctaggtgtttatttat	9	10	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33014721	T	T	33014721	1	4	150	0	1	0	0	0	0	0	0	0	5972	986	34	3		3	FKBP9	7	33014721	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1887431	33014721	126123942	273	129123											
NPSR1	387129	broad.mit.edu	37	chr7	34889212	34889213	+	Missense_Mutation	DNP	GG	TT	TT													ggattccagaatgacgttccGggagagaactgagaggcatg					rs77260034	byFrequency	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	34889213	TT	TT	34889212	3	4	150	1	0	0	0	0	1	0	0	0	10695	1116	39	1	1095	1	NPSR1	7	34889212	Missense_Mutation	DNP	GG	TCGA-50-5045-01A-01D-1625-08	1874491	34889212	124249451	274	129124											
AOAH	313	broad.mit.edu	37	chr7	36634041	36634041	+	Intron	DEL	G	-	-													gattgatgaaagagttctaaGgaaaacaataaagtagcaat							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36634041	-	-	36634041	6	5	150	0	1	1	0	1	0	0	0	0	728	1015	35	0		0	AOAH	7	36634041	Intron	DEL	G	TCGA-50-5045-01A-01D-1625-08	1744829	36634041	122504622	275	129125											
TXNDC3	51314	broad.mit.edu	37	chr7	37903097	37903097	+	Intron	DEL	T	-	-													acttcaaagtaatccaagggTtttctgtacgtgggcggtca							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37903097	-	-	37903097	6	5	150	0	1	1	0	1	0	0	0	0	16924	1740	60	0		0	TXNDC3	7	37903097	Intron	DEL	T	TCGA-50-5045-01A-01D-1625-08	1269056	37903097	121235566	276	129126											
INHBA	3624	broad.mit.edu	37	chr7	41729415	41729415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcggtagtggttgatgaCtgttgagtggaaggacagtg	17	4	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41729415	A	A	41729415	3	1	150	1	0	0	0	0	1	0	0	0	7811	565	20	3	170	3	INHBA	7	41729415	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3826318	41729415	117409248	277	129127											
GLI3	2737	broad.mit.edu	37	chr7	42006218	42006218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgggcccacccaagctgCaggtgttgttggactgtgtg	14	10	1	0	rs77498774		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42006218	A	A	42006218	3	1	150	1	0	0	0	0	1	0	0	0	6503	710	25	3	2293	3	GLI3	7	42006218	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	276803	42006218	117132445	278	129128											
MYO1G	64005	broad.mit.edu	37	chr7	45016329	45016329	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctccctgtgcccactcacAcccccaagactggcaagatg	8	17	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45016329	T	T	45016329	1	4	150	0	1	0	0	0	0	0	0	0	10168	174	6	5		5	MYO1G	7	45016329	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	3010111	45016329	114122334	279	129129											
IGFBP3	3486	broad.mit.edu	37	chr7	45956754	45956754	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattgccctcaagaggctctGagtacccaggcttggcaggt	12	11	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45956754	C	C	45956754	1	2	150	0	1	0	0	0	0	0	0	0	7650	1305	45	4		4	IGFBP3	7	45956754	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	940425	45956754	113181909	280	129130											
ZNF716	441234	broad.mit.edu	37	chr7	57528508	57528508	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaaaaagtgatactgagaaGatatggaaaatgtggacagg	12	4	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57528508	A	A	57528508	3	1	150	1	0	0	0	0	1	0	0	0	18247	942	33	4	355	4	ZNF716	7	57528508	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	11571754	57528508	101610155	281	129131											
GUSB	2990	broad.mit.edu	37	chr7	65435274	65435275	+	Frame_Shift_Del	DEL	TG	-	-													gacccccaggctcaccccctTgtctgctgcatagttagagt					rs143084006		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65435275	-	-	65435274	7	5	150	1	0	1	0	1	0	0	0	0	6967	1821	63	0	500	0	GUSB	7	65435274	Frame_Shift_Del	DEL	TG	TCGA-50-5045-01A-01D-1625-08	7906766	65435274	93703389	282	129132											
ASL	435	broad.mit.edu	37	chr7	65557449	65557449	+	Intron	DEL	A	-	-													cgagactttgtgtcaaaaagAaaaaaaaaaaaaaaaggaag							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65557449	-	-	65557449	6	5	150	0	1	1	0	1	0	0	0	0	1048	261	9	0		0	ASL	7	65557449	Intron	DEL	A	TCGA-50-5045-01A-01D-1625-08	122175	65557449	93581214	283	129133											
WBSCR17	64409	broad.mit.edu	37	chr7	70800554	70800554	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttatccaaatcccttgGgctcattgaaggttatggtg	11	8	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70800554	T	T	70800554	3	4	150	1	0	0	0	0	1	0	0	0	17391	1232	43	2	263	2	WBSCR17	7	70800554	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	5243105	70800554	88338109	284	129134											
CACNA2D1	781	broad.mit.edu	37	chr7	81598255	81598256	+	Missense_Mutation	DNP	CA	AT	AT													atttctacagctttgcttacCataatgcccgattcataggc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	81598256	AT	AT	81598255	3	1	150	1	0	0	0	0	1	0	0	0	2574	594	21	2	976	2	CACNA2D1	7	81598255	Missense_Mutation	DNP	CA	TCGA-50-5045-01A-01D-1625-08	10797701	81598255	77540408	285	129135											
LAMB4	22798	broad.mit.edu	37	chr7	107708479	107708479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtgacagccgtgatgccCcaaatcatagcttccagttg	10	12	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107708479	A	A	107708479	3	1	150	1	0	0	0	0	1	0	0	0	8685	623	22	2	2921	2	LAMB4	7	107708479	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	26110224	107708479	51430184	286	129136											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518674	113518674	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttcctaggattgtacaTagacatggtttcttccttct	7	9	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113518674	C	C	113518674	3	2	150	1	0	0	0	0	1	0	0	0	12472	1406	49	5	899	5	PPP1R3A	7	113518674	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	5810195	113518674	45619989	287	129137											
CTTNBP2	83992	broad.mit.edu	37	chr7	117424408	117424408	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagcattgataataaagtGacatttccctgggcagcagc	10	9	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117424408	A	A	117424408	2	1	150	1	0	0	0	0	0	0	0	1	4079	1277	45	4		4	CTTNBP2	7	117424408	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	3905734	117424408	41714255	288	129138											
PTPRZ1	5803	broad.mit.edu	37	chr7	121652109	121652109	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggagcctcttctgatagTgaatttcttttacctgacac	7	10	4	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121652109	C	C	121652109	2	2	150	1	0	0	0	0	0	0	0	1	12922	1693	59	5		5	PTPRZ1	7	121652109	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	4227701	121652109	37486554	289	129139											
PTPRZ1	5803	broad.mit.edu	37	chr7	121653456	121653456	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctatagagaatcacaGgaaaaggtaatgaatgattc	8	6	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121653456	A	A	121653456	2	1	150	1	0	0	0	0	0	0	0	1	12922	991	35	4		4	PTPRZ1	7	121653456	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	1347	121653456	37485207	290	129140											
PTPRZ1	5803	broad.mit.edu	37	chr7	121676698	121676698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcttgctgaaaaggatGgcaaactgactgattatatc	9	8	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121676698	T	T	121676698	3	4	150	1	0	0	0	0	1	0	0	0	12922	1348	47	2	5399	2	PTPRZ1	7	121676698	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	23242	121676698	37461965	291	129141											
SLC13A1	6561	broad.mit.edu	37	chr7	122821070	122821070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgggtaacattaaactaGgtagcaaagctgttaccgac	9	8	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122821070	T	T	122821070	3	4	150	1	0	0	0	0	1	0	0	0	14504	1000	35	2	1658	2	SLC13A1	7	122821070	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1144372	122821070	36317593	292	129142											
GRM8	2918	broad.mit.edu	37	chr7	126173676	126173676	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaatattgcaacaaacacaGgcaccacagcccagggagaa	8	13	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126173676	C	C	126173676	3	2	150	1	0	0	0	0	1	0	0	0	6869	1000	35	4	1028	4	GRM8	7	126173676	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3352606	126173676	32964987	293	129143											
GRM8	2918	broad.mit.edu	37	chr7	126883292	126883292	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtattgcaatccaagacccAaagtttattcttgccacaga	7	10	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126883292	G	G	126883292	1	3	150	0	1	0	0	0	0	0	0	0	6869	145	5	5		5	GRM8	7	126883292	5'UTR	SNP	A	TCGA-50-5045-01A-01D-1625-08	709616	126883292	32255371	294	129144											
PLXNA4	91584	broad.mit.edu	37	chr7	131833263	131833264	+	Intron	DNP	GT	AG	AG													atttccagggcaagggacttGtagttggctagctcctcccc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	131833264	AG	AG	131833263	1	1	150	0	1	0	0	0	0	0	0	0	12217	1392	48	4		4	PLXNA4	7	131833263	Intron	DNP	GT	TCGA-50-5045-01A-01D-1625-08	4949971	131833263	27305400	295	129145											
LRGUK	136332	broad.mit.edu	37	chr7	133884067	133884067	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggatatttgcggagaaaAggattattcagtcgtgcaga	14	4	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133884067	T	T	133884067	3	4	150	1	0	0	0	0	1	0	0	0	9030	69	3	5	1695	5	LRGUK	7	133884067	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	2050804	133884067	25254596	296	129146											
TRIM24	8805	broad.mit.edu	37	chr7	138200011	138200011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggttttgtgtagagtgtGttgaatggctctgcaagacg	15	4	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138200011	T	T	138200011	3	4	150	1	0	0	0	0	1	0	0	0	16622	1377	48	3	548	3	TRIM24	7	138200011	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4315944	138200011	20938652	297	129147											
ADCK2	90956	broad.mit.edu	37	chr7	140386620	140386620	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactttaacttagctcatccTtgtacaaattctgagttgac	5	9	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140386620	C	C	140386620	1	2	150	0	1	0	0	0	0	0	0	0	289	1624	56	5		5	ADCK2	7	140386620	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	2186609	140386620	18752043	298	129148											
SSBP1	6742	broad.mit.edu	37	chr7	141443635	141443635	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgttctcttagaaatcgtGacattggttttcctgggcat	9	7	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141443635	T	T	141443635	1	4	150	0	1	0	0	0	0	0	0	0	15297	1305	45	3		3	SSBP1	7	141443635	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1057015	141443635	17695028	299	129149											
MGAM	8972	broad.mit.edu	37	chr7	141778534	141778534	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcatataaaatgactttTctaaccctgtttaggttaga	6	6	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141778534	A	A	141778534	1	1	150	0	1	0	0	0	0	0	0	0	9634	1798	62	5		5	MGAM	7	141778534	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	334899	141778534	17360129	300	129150											
PRSS1	5644	broad.mit.edu	37	chr7	142458347	142458347	+	Intron	DEL	G	-	-													gcagaaagcaatcacaggctGggagcgccacccctaacatg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142458347	-	-	142458347	6	5	150	0	1	1	0	1	0	0	0	0	12720	1363	47	0		0	PRSS1	7	142458347	Intron	DEL	G	TCGA-50-5045-01A-01D-1625-08	679813	142458347	16680316	301	129151											
TRPV5	56302	broad.mit.edu	37	chr7	142612746	142612746	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcataggcctcctatgtgGggaaattcagaagaagtgct	11	8	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142612746	A	A	142612746	1	1	150	0	1	0	0	0	0	0	0	0	16724	1247	43	4		4	TRPV5	7	142612746	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	154399	142612746	16525917	302	129152											
OR2A25	392138	broad.mit.edu	37	chr7	143771411	143771412	+	Missense_Mutation	DNP	CT	AA	AA													tttgggctcttctccctgttCtacatcttcattctgttggg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	143771412	AA	AA	143771411	3	1	150	1	0	0	0	0	1	0	0	0	11072	912	32	3	101	3	OR2A25	7	143771411	Missense_Mutation	DNP	CT	TCGA-50-5045-01A-01D-1625-08	1158665	143771411	15367252	303	129153											
OR2A12	346525	broad.mit.edu	37	chr7	143793022	143793022	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacggaggaagatcctttcCctgttttacagccttttcaa	8	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143793022	A	A	143793022	2	1	150	1	0	0	0	0	0	0	0	1	11069	610	22	2		2	OR2A12	7	143793022	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	21611	143793022	15345641	304	129154											
PDIA4	9601	broad.mit.edu	37	chr7	148702534	148702534	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccagctcagactctgaggtCaggcttcaggtcctgtcgct	11	14	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148702534	A	A	148702534	1	1	150	0	1	0	0	0	0	0	0	0	11764	841	29	3		3	PDIA4	7	148702534	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	4909512	148702534	10436129	305	129155											
ZNF777	27153	broad.mit.edu	37	chr7	149129475	149129475	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagggcttagggccaccgcCgccgctaccagagctgggtg	16	13	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149129475	A	A	149129475	3	1	150	1	0	0	0	0	1	0	0	0	18279	652	23	1	611	1	ZNF777	7	149129475	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	426941	149129475	10009188	306	129156											
ZNF746	155061	broad.mit.edu	37	chr7	149172601	149172601	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagacagaaagacagatactGacctgtcccttaactgctga	8	10	0	6			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149172601	A	A	149172601	1	1	150	0	1	0	0	0	0	0	0	0	18258	1305	45	4		4	ZNF746	7	149172601	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	43126	149172601	9966062	307	129157											
NOS3	4846	broad.mit.edu	37	chr7	150698616	150698617	+	Intron	INS	-	T	T													ttacctcccctcccaaccccINSatcatctctctgcagccaga							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150698617	T	T	150698616	6	5	150	0	1	1	1	0	0	0	0	0	10639	609	21	0		0	NOS3	7	150698616	Intron	INS	-	TCGA-50-5045-01A-01D-1625-08	1526015	150698616	8440047	308	129158											
ABCF2	10061	broad.mit.edu	37	chr7	150912604	150912604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttggacagcttccaaacCcaggctgccaggacagtatc	11	12	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912604	A	A	150912604	1	1	150	0	1	0	0	0	0	0	0	0	66	638	22	2		2	ABCF2	7	150912604	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	213988	150912604	8226059	309	129159											
MLL3	58508	broad.mit.edu	37	chr7	151945325	151945325	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccatcaatccagtagaaaGttcagaattttctttctgtt	6	8	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151945325	A	A	151945325	3	1	150	1	0	0	0	0	1	0	0	0	9715	1029	36	4	12725	4	MLL3	7	151945325	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1032721	151945325	7193338	310	129160											
MNX1	3110	broad.mit.edu	37	chr7	156802971	156802971	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaaggccagcggcgcgCtctgcgcagaggcggctcgt	16	14	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156802971	T	T	156802971	3	4	150	1	0	0	0	0	1	0	0	0	9773	797	28	4	1202	4	MNX1	7	156802971	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4857646	156802971	2335692	311	129161											
UBE3C	9690	broad.mit.edu	37	chr7	157018264	157018264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttctgtgtattatttgGcaggtggaggctagggaatt	13	4	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157018264	T	T	157018264	1	4	150	0	1	0	0	0	0	0	0	0	17007	1218	42	3		3	UBE3C	7	157018264	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	215293	157018264	2120399	312	129162											
PTPRN2	5799	broad.mit.edu	37	chr7	157370936	157370936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaatttattccattcacAggacatttatttcattttca	2	9	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157370936	G	G	157370936	1	3	150	0	1	0	0	0	0	0	0	0	12916	203	7	5		5	PTPRN2	7	157370936	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	352672	157370936	1767727	313	129163											
PTPRN2	5799	broad.mit.edu	37	chr7	157414361	157414361	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgctacggtgcacaatgCatatcataccatgcaaccgt	8	11	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157414361	A	A	157414361	1	1	150	0	1	0	0	0	0	0	0	0	12916	725	25	3		3	PTPRN2	7	157414361	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	43425	157414361	1724302	314	129164											
CSMD1	64478	broad.mit.edu	37	chr8	2808800	2808800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagacatctgaaggaactGtgggaaggggggaaacagac	15	5	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2808800	T	T	2808800	1	4	150	0	1	0	0	0	0	0	0	0	3978	1392	48	3		3	CSMD1	8	2808800	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08		2808800	143555222	315	129165											
MCPH1	79648	broad.mit.edu	37	chr8	6312589	6312589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccattatgcataaatGtgatttttgttttgcttaag	7	4	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6312589	T	T	6312589	1	4	150	0	1	0	0	0	0	0	0	0	9491	1392	48	3		3	MCPH1	8	6312589	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3503789	6312589	140051433	316	129166											
RP1L1	94137	broad.mit.edu	37	chr8	10470620	10470620	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtcctcgccgaccaggtGgaagcggactttcatctcca	11	14	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10470620	A	A	10470620	3	1	150	1	0	0	0	0	1	0	0	0	13644	1348	47	4	6218	4	RP1L1	8	10470620	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4158031	10470620	135893402	317	129167											
NAT1	9	broad.mit.edu	37	chr8	18079764	18079764	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcggggtggatggtgtctcCaggtcaatcatcttctgtac	12	9	5	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18079764	T	T	18079764	4	4	150	1	0	0	0	0	0	1	0	0	10267	595	21	4	404	4	NAT1	8	18079764	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	7609144	18079764	128284258	318	129168											
ADAM7	8756	broad.mit.edu	37	chr8	24304641	24304641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacccaaagcactacttgCtccagaacacactaaatgag	5	13	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24304641	A	A	24304641	1	1	150	0	1	0	0	0	0	0	0	0	251	812	28	3		3	ADAM7	8	24304641	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	6224877	24304641	122059381	319	129169											
ANK1	286	broad.mit.edu	37	chr8	41577167	41577167	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaccttctccagcagcAcccccactcaccagggctct	6	20	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41577167	T	T	41577167	1	4	150	0	1	0	0	0	0	0	0	0	620	174	6	5		5	ANK1	8	41577167	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	17272526	41577167	104786855	320	129170											
ANK1	286	broad.mit.edu	37	chr8	41580990	41580990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaagggcccgctgctctgGgtgaggcttgtgagggggga	19	9	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41580990	T	T	41580990	1	4	150	0	1	0	0	0	0	0	0	0	620	1247	43	2		2	ANK1	8	41580990	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3823	41580990	104783032	321	129171											
PRKDC	5591	broad.mit.edu	37	chr8	48719903	48719903	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatctacacaaagaaaaaTgagacaatgtcacagactca	5	9	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48719903	C	C	48719903	1	2	150	0	1	0	0	0	0	0	0	0	12627	1479	51	5		5	PRKDC	8	48719903	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	7138913	48719903	97644119	322	129172											
RP1	6101	broad.mit.edu	37	chr8	55542602	55542602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattcaaatacacaagacCtcagcggtcagacaaatgaa	8	9	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55542602	A	A	55542602	3	1	150	1	0	0	0	0	1	0	0	0	13643	681	24	2	6170	2	RP1	8	55542602	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	6822699	55542602	90821420	323	129173											
C8orf34	116328	broad.mit.edu	37	chr8	69728223	69728223	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatcgatgtcgggtaatggCgggtaccttctaaaactgct	11	8	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69728223	T	T	69728223	1	4	150	0	1	0	0	0	0	0	0	0	2448	783	27	4		4	C8orf34	8	69728223	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	14185621	69728223	76635799	324	129174											
HRSP12	10247	broad.mit.edu	37	chr8	99118161	99118161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggaataaagccaaattaCttacactgtttgtagatttc	6	6	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99118161	A	A	99118161	1	1	150	0	1	0	0	0	0	0	0	0	7427	580	20	3		3	HRSP12	8	99118161	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	29389938	99118161	47245861	325	129175											
OSR2	116039	broad.mit.edu	37	chr8	99961618	99961618	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccaggactgggtagcccCatctcgggcctcagtaaatt	11	13	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99961618	T	T	99961618	2	4	150	1	0	0	0	0	0	0	0	1	11388	581	21	4		4	OSR2	8	99961618	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	843457	99961618	46402404	326	129176											
NUDCD1	84955	broad.mit.edu	37	chr8	110305452	110305452	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattccaccagtggtggcagGtgccagaattgtaacacaat	10	10	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110305452	A	A	110305452	1	1	150	0	1	0	0	0	0	0	0	0	10817	1276	44	4		4	NUDCD1	8	110305452	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	10343834	110305452	36058570	327	129177											
CSMD3	114788	broad.mit.edu	37	chr8	113304709	113304709	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttttaagtgtgtcactgAtgtttatgtgaatattatta	8	3	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113304709	G	G	113304709	1	3	150	0	1	0	0	0	0	0	0	0	3980	348	12	5		5	CSMD3	8	113304709	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	2999257	113304709	33059313	328	129178											
ENPP2	5168	broad.mit.edu	37	chr8	120596284	120596284	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcttataaacatccaaaGgtttcctaaattgaaacaat	4	7	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120596284	A	A	120596284	3	1	150	1	0	0	0	0	1	0	0	0	5172	1000	35	4	1337	4	ENPP2	8	120596284	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	7291575	120596284	25767738	329	129179											
MTBP	27085	broad.mit.edu	37	chr8	121534985	121534985	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaattattcccaagaaactAtattcaattaaattggtatt	4	5	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121534985	G	G	121534985	1	3	150	0	1	0	0	0	0	0	0	0	10006	464	16	5		5	MTBP	8	121534985	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	938701	121534985	24829037	330	129180											
SNTB1	6641	broad.mit.edu	37	chr8	121649384	121649384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttaaagtattcctgatTagtcctgtttgcataagcaa	6	7	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121649384	C	C	121649384	1	2	150	0	1	0	0	0	0	0	0	0	14986	1769	61	5		5	SNTB1	8	121649384	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	114399	121649384	24714638	331	129181											
FER1L6	654463	broad.mit.edu	37	chr8	124985582	124985582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgatggccaaactccaCtgtgctccagacagggtcaa	11	11	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124985582	T	T	124985582	1	4	150	0	1	0	0	0	0	0	0	0	5872	580	20	4		4	FER1L6	8	124985582	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	3336198	124985582	21378440	332	129182											
GSDMC	56169	broad.mit.edu	37	chr8	130774859	130774859	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccatctgccttgctgagctCcgctgctcccacctttctcc	7	19	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130774859	A	A	130774859	1	1	150	0	1	0	0	0	0	0	0	0	6884	870	30	3		3	GSDMC	8	130774859	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	5789277	130774859	15589163	333	129183											
OC90	729330	broad.mit.edu	37	chr8	133036951	133036951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctttggttaaaggagGcagaggtcatgcactcagct	14	7	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133036951	T	T	133036951	3	4	150	1	0	0	0	0	1	0	0	0	10909	1203	42	3	226	3	OC90	8	133036951	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2262092	133036951	13327071	334	129184											
FAM135B	51059	broad.mit.edu	37	chr8	139380238	139380238	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagacatgatctttttggCtcattacctgaaaaacaaga	6	8	3	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139380238	A	A	139380238	1	1	150	0	1	0	0	0	0	0	0	0	5495	812	28	3		3	FAM135B	8	139380238	5'UTR	SNP	C	TCGA-50-5045-01A-01D-1625-08	6343287	139380238	6983784	335	129185											
COL22A1	169044	broad.mit.edu	37	chr8	139629072	139629072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggtaaggcactgccatGgcctgcaggctgcaagtatc	13	12	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139629072	T	T	139629072	1	4	150	0	1	0	0	0	0	0	0	0	3713	1363	47	2		2	COL22A1	8	139629072	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	248834	139629072	6734950	336	129186											
PTK2	5747	broad.mit.edu	37	chr8	141900637	141900637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtctcatggaaaaacgtaCttaccctgacatcagtagca	7	10	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141900637	A	A	141900637	1	1	150	0	1	0	0	0	0	0	0	0	12868	580	20	3		3	PTK2	8	141900637	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2271565	141900637	4463385	337	129187											
CYP11B1	1584	broad.mit.edu	37	chr8	143955805	143955805	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgattagttgatggctctgAaggtgaggagggggaacatg	18	3	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143955805	T	T	143955805	3	4	150	1	0	0	0	0	1	0	0	0	4178	246	9	5	19	5	CYP11B1	8	143955805	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	2055168	143955805	2408217	338	129188											
DOCK8	81704	broad.mit.edu	37	chr9	334314	334314	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgccctttgcctgggcaccCataagcttatcaagcttctt	7	13	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	334314	T	T	334314	2	4	150	1	0	0	0	0	0	0	0	1	4733	581	21	4		4	DOCK8	9	334314	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08		334314	140879117	339	129189											
SMARCA2	6595	broad.mit.edu	37	chr9	2104102	2104102	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgctgcttttctgccagatGacatctctcatgaccatcat	7	12	4	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2104102	C	C	2104102	3	2	150	1	0	0	0	0	1	0	0	0	14883	1290	45	4	3311	4	SMARCA2	9	2104102	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1769788	2104102	139109329	340	129190											
KDM4C	23081	broad.mit.edu	37	chr9	7046895	7046895	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaatttgagaggaggtgctCttaagcaaacgaagaacaat	11	6	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7046895	T	T	7046895	3	4	150	1	0	0	0	0	1	0	0	0	8200	913	32	4	2421	4	KDM4C	9	7046895	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4942793	7046895	134166536	341	129191											
PTPRD	5789	broad.mit.edu	37	chr9	8521456	8521456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacataaggcattggtgacCccacggccacacaggtgata	10	11	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8521456	A	A	8521456	3	1	150	1	0	0	0	0	1	0	0	0	12907	623	22	2	5132	2	PTPRD	9	8521456	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1474561	8521456	132691975	342	129192											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18777116	18777116	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgattaagctcatcggaggCaaccgcaagctcgtggcccg	13	12	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18777116	A	A	18777116	2	1	150	1	0	0	0	0	0	0	0	1	274	697	25	3		3	ADAMTSL1	9	18777116	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	10255660	18777116	122436315	343	129193											
DENND4C	55667	broad.mit.edu	37	chr9	19334868	19334868	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgctcaaagcagaacaaagGagaaaatactgcttaataac	7	7	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19334868	C	C	19334868	1	2	150	0	1	0	0	0	0	0	0	0	4475	1189	41	4		4	DENND4C	9	19334868	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	557752	19334868	121878563	344	129194											
ACO1	48	broad.mit.edu	37	chr9	32407428	32407428	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcctgcaggactttacGtgagcctaatgtcacttcac	8	12	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32407428	T	T	32407428	5	4	150	1	0	0	0	0	0	0	1	0	146	1159	40	3	273	3	ACO1	9	32407428	Splice_Site	SNP	G	TCGA-50-5045-01A-01D-1625-08	13072560	32407428	108806003	345	129195											
GALT	2592	broad.mit.edu	37	chr9	34647906	34647906	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagatccgggctgttgttgAtgcatgggcctcagtcacag	14	9	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34647906	T	T	34647906	3	4	150	1	0	0	0	0	1	0	0	0	6292	333	12	5	473	5	GALT	9	34647906	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	2240478	34647906	106565525	346	129196											
CNTNAP3	79937	broad.mit.edu	37	chr9	39178104	39178104	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agactgagtaccaacaaatgTaaacagattttttttaacta	5	6	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39178104	A	A	39178104	1	1	150	0	1	0	0	0	0	0	0	0	3680	1653	57	5		5	CNTNAP3	9	39178104	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	4530198	39178104	102035327	347	129197											
RORB	6096	broad.mit.edu	37	chr9	77300511	77300511	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaggagctctttaatcctGactgtgccaccggctgcaaa	9	12	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77300511	T	T	77300511	3	4	150	1	0	0	0	0	1	0	0	0	13640	1290	45	3	1395	3	RORB	9	77300511	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	38122407	77300511	63912920	348	129198											
GNA14	9630	broad.mit.edu	37	chr9	80038829	80038829	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgatgtcagaagcacTtgcaaataaaacaaggagtt	10	6	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80038829	C	C	80038829	1	2	150	0	1	0	0	0	0	0	0	0	6566	1624	56	5		5	GNA14	9	80038829	3'UTR	SNP	T	TCGA-50-5045-01A-01D-1625-08	2738318	80038829	61174602	349	129199											
FLJ46321	389763	broad.mit.edu	37	chr9	84606237	84606237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgccaagatatttcgcaGgccatgaatcccattgattc	7	11	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84606237	T	T	84606237	3	4	150	1	0	0	0	0	1	0	0	0	5990	991	35	2	866	2	FLJ46321	9	84606237	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4567408	84606237	56607194	350	129200											
TBC1D2	55357	broad.mit.edu	37	chr9	100983075	100983075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgagggctgggacagaGgaccggcaggactggcaggc	18	11	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100983075	T	T	100983075	1	4	150	0	1	0	0	0	0	0	0	0	15727	1015	35	2		2	TBC1D2	9	100983075	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	16376838	100983075	40230356	351	129201											
MUSK	4593	broad.mit.edu	37	chr9	113459690	113459690	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggacagtatcgatgtgTggcaaaaaacagcctcggga	13	8	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113459690	C	C	113459690	3	2	150	1	0	0	0	0	1	0	0	0	10083	1696	59	5	590	5	MUSK	9	113459690	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	12476615	113459690	27753741	352	129202											
MUSK	4593	broad.mit.edu	37	chr9	113562896	113562896	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaattgccgactttggcctCtccaggaacatctactcagc	7	13	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113562896	T	T	113562896	2	4	150	1	0	0	0	0	0	0	0	1	10083	900	32	4		4	MUSK	9	113562896	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	103206	113562896	27650535	353	129203											
STOM	2040	broad.mit.edu	37	chr9	124115628	124115628	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaccagcaacctaatcagTtcacttctccattcagtttt	4	13	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124115628	C	C	124115628	1	2	150	0	1	0	0	0	0	0	0	0	15430	1740	60	5		5	STOM	9	124115628	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	10552732	124115628	17097803	354	129204											
PBX3	5090	broad.mit.edu	37	chr9	128697757	128697757	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactcttgtcatagacggaaAaggcgtaacttcagtaaaca	8	9	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128697757	T	T	128697757	3	4	150	1	0	0	0	0	1	0	0	0	11588	11	1	5	732	5	PBX3	9	128697757	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	4582129	128697757	12515674	355	129205											
ADAMTS13	11093	broad.mit.edu	37	chr9	136298700	136298700	+	Intron	DEL	C	-	-													gagtgtggccataccatagtCcctagttgaaggcagtggtc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136298700	-	-	136298700	6	5	150	0	1	1	0	1	0	0	0	0	258	870	30	0		0	ADAMTS13	9	136298700	Intron	DEL	C	TCGA-50-5045-01A-01D-1625-08	7600943	136298700	4914731	356	129206											
COL5A1	1289	broad.mit.edu	37	chr9	137655451	137655451	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtgaagcagccccaagCcagagaacccttgtgcacca	10	13	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137655451	T	T	137655451	1	4	150	0	1	0	0	0	0	0	0	0	3728	754	26	4		4	COL5A1	9	137655451	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1356751	137655451	3557980	357	129207											
FCN2	2220	broad.mit.edu	37	chr9	137778291	137778291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggaaccagcgagctccGtgtagacctggtggactttg	13	10	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137778291	T	T	137778291	3	4	150	1	0	0	0	0	1	0	0	0	5849	1145	40	3	601	3	FCN2	9	137778291	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	122840	137778291	3435140	358	129208											
SNAPC4	6621	broad.mit.edu	37	chr9	139286582	139286582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgacagagacactcagcCttgcaggccactgaccccag	9	17	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139286582	A	A	139286582	1	1	150	0	1	0	0	0	0	0	0	0	14951	696	24	2		2	SNAPC4	9	139286582	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1508291	139286582	1926849	359	129209											
DIP2C	22982	broad.mit.edu	37	chr10	329193	329193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatctgttgggggggggcCgccagcctggactctcacct	14	15	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	329193	A	A	329193	1	1	150	0	1	0	0	0	0	0	0	0	4569	667	23	1		1	DIP2C	10	329193	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08		329193	135205554	360	129210											
PRPF18	8559	broad.mit.edu	37	chr10	13652108	13652108	+	Frame_Shift_Del	DEL	G	-	-													acctcaatgaaatcgtcggcGgtcaggagcctggagaggaa							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13652108	-	-	13652108	7	5	150	1	0	1	0	1	0	0	0	0	12669	1116	39	0	451	0	PRPF18	10	13652108	Frame_Shift_Del	DEL	G	TCGA-50-5045-01A-01D-1625-08	13322915	13652108	121882639	361	129211											
HSPA14	51182	broad.mit.edu	37	chr10	14913621	14913621	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttagtgttttagagaaatcAagaatttttaaaaacaagaa	6	3	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14913621	G	G	14913621	1	3	150	0	1	0	0	0	0	0	0	0	7476	145	5	5		5	HSPA14	10	14913621	3'UTR	SNP	A	TCGA-50-5045-01A-01D-1625-08	1261513	14913621	120621126	362	129212											
CUBN	8029	broad.mit.edu	37	chr10	16949760	16949760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatatttccagcccagaCccacttccttttatgggaac	8	12	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16949760	A	A	16949760	1	1	150	0	1	0	0	0	0	0	0	0	4084	522	18	3		3	CUBN	10	16949760	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2036139	16949760	118584987	363	129213											
MLLT10	8028	broad.mit.edu	37	chr10	21962366	21962366	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcctgagctttacagactCagatctgcgtaatgacagtt	8	9	2	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21962366	T	T	21962366	3	4	150	1	0	0	0	0	1	0	0	0	9719	838	29	4	1177	4	MLLT10	10	21962366	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5012606	21962366	113572381	364	129214											
MYO3A	53904	broad.mit.edu	37	chr10	26414287	26414287	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttggggagtgacctcattGccataatttcttctaacaat	7	8	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26414287	C	C	26414287	1	2	150	0	1	0	0	0	0	0	0	0	10170	1334	46	4		4	MYO3A	10	26414287	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	4451921	26414287	109120460	365	129215											
MTPAP	55149	broad.mit.edu	37	chr10	30630609	30630609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccaccacacgcacacaCacaaaattttaaaaatattt	1	11	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30630609	A	A	30630609	1	1	150	0	1	0	0	0	0	0	0	0	10050	493	17	3		3	MTPAP	10	30630609	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	4216322	30630609	104904138	366	129216											
ZNF248	57209	broad.mit.edu	37	chr10	38145231	38145231	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagaatctcacctgggatTtgttcattttccgctcttag	7	10	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38145231	A	A	38145231	3	1	150	1	0	0	0	0	1	0	0	0	17919	1841	64	5	1747	5	ZNF248	10	38145231	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	7514622	38145231	97389516	367	129217											
CHAT	1103	broad.mit.edu	37	chr10	50835618	50835618	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggtgccacgggccacCcaacaagtgacatgtttgac	12	13	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50835618	A	A	50835618	1	1	150	0	1	0	0	0	0	0	0	0	3344	638	22	2		2	CHAT	10	50835618	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	12690387	50835618	84699129	368	129218											
C10orf53	282966	broad.mit.edu	37	chr10	50916364	50916364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacagcaggactctgtctcCatctcttgatgctgctttct	7	13	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50916364	A	A	50916364	1	1	150	0	1	0	0	0	0	0	0	0	1617	609	21	2		2	C10orf53	10	50916364	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	80746	50916364	84618383	369	129219											
OGDHL	55753	broad.mit.edu	37	chr10	50959886	50959886	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccaacctcatggagcgcaCtagccgggccagcagggtcc	13	15	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50959886	G	G	50959886	3	3	150	1	0	0	0	0	1	0	0	0	10935	565	20	4	2368	4	OGDHL	10	50959886	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	43522	50959886	84574861	370	129220											
PRKG1	5592	broad.mit.edu	37	chr10	53564427	53564427	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggactcatcaagcatacCgagtatatggaatttttaaa	7	7	2	0	rs142166726	byFrequency	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53564427	A	A	53564427	2	1	150	1	0	0	0	0	0	0	0	1	12628	639	23	1		1	PRKG1	10	53564427	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	2604541	53564427	81970320	371	129221											
PCDH15	65217	broad.mit.edu	37	chr10	55568998	55568998	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcactgtattcagtatagtcGctggaggattcctcctctga	9	10	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55568998	C	C	55568998	3	2	150	1	0	0	0	0	1	0	0	0	11605	1078	38	4	1104	4	PCDH15	10	55568998	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2004571	55568998	79965749	372	129222											
TMEM26	219623	broad.mit.edu	37	chr10	63170408	63170408	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccatcttgtatgaagacgCtgattccgatgttccacaga	10	10	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63170408	T	T	63170408	3	4	150	1	0	0	0	0	1	0	0	0	16274	797	28	4	331	4	TMEM26	10	63170408	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	7601410	63170408	72364339	373	129223											
ARID5B	84159	broad.mit.edu	37	chr10	63850816	63850816	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtgagaaggtggcagagGaggcgggagagaaggggccc	21	6	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63850816	T	T	63850816	4	4	150	1	0	0	0	0	0	1	0	0	924	1175	41	3	1632	3	ARID5B	10	63850816	Nonsense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	680408	63850816	71683931	374	129224											
CTNNA3	29119	broad.mit.edu	37	chr10	68040211	68040211	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgcaataattcaatggaAggaaaagcaaacttacccga	7	8	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68040211	T	T	68040211	1	4	150	0	1	0	0	0	0	0	0	0	4048	87	3	5		5	CTNNA3	10	68040211	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	4189395	68040211	67494536	375	129225											
DLG5	9231	broad.mit.edu	37	chr10	79589107	79589107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgccatgttcacaggccCgctacctttctgtccactga	7	16	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79589107	A	A	79589107	1	1	150	0	1	0	0	0	0	0	0	0	4598	667	23	1		1	DLG5	10	79589107	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	11548896	79589107	55945640	376	129226											
C10orf58	84293	broad.mit.edu	37	chr10	82187222	82187222	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaggcttcatccttggGggagttttcgtggtgggatc	17	6	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82187222	A	A	82187222	2	1	150	1	0	0	0	0	0	0	0	1	1621	1219	43	4		4	C10orf58	10	82187222	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	2598115	82187222	53347525	377	129227											
BMPR1A	657	broad.mit.edu	37	chr10	88635753	88635753	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attattaaaggtgacagtacAcaggaaacattacaattgaa	7	5	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88635753	G	G	88635753	1	3	150	0	1	0	0	0	0	0	0	0	1475	174	6	5		5	BMPR1A	10	88635753	5'UTR	SNP	A	TCGA-50-5045-01A-01D-1625-08	6448531	88635753	46898994	378	129228											
PDLIM1	9124	broad.mit.edu	37	chr10	97023607	97023607	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcggctcagaggaggactCctgggctacttacggtctgc	15	11	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97023607	A	A	97023607	1	1	150	0	1	0	0	0	0	0	0	0	11773	870	30	3		3	PDLIM1	10	97023607	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	8387854	97023607	38511140	379	129229											
TLX1NB	100038246	broad.mit.edu	37	chr10	102849705	102849705	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggatcctgacttagaagGgcctagaggaaaactctccc	11	10	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102849705	T	T	102849705	1	4	150	0	1	0	0	0	0	0	0	0	16083	1247	43	2		2	TLX1NB	10	102849705	5'UTR	SNP	G	TCGA-50-5045-01A-01D-1625-08	5826098	102849705	32685042	380	129230											
PPRC1	23082	broad.mit.edu	37	chr10	103904696	103904696	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttctctgcacccaccccctCccattgatttctgagaaagg	6	16	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103904696	T	T	103904696	1	4	150	0	1	0	0	0	0	0	0	0	12511	870	30	4		4	PPRC1	10	103904696	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1054991	103904696	31630051	381	129231											
TRIM8	81603	broad.mit.edu	37	chr10	104414406	104414406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccacccaaatgtccctGcagaagatgctcatgaagca	7	14	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104414406	T	T	104414406	1	4	150	0	1	0	0	0	0	0	0	0	16673	1334	46	3		3	TRIM8	10	104414406	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	509710	104414406	31120341	382	129232											
SORCS1	114815	broad.mit.edu	37	chr10	108427547	108427547	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggccattgctgtgtcgctCataaccatagtcgctgttag	10	11	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108427547	A	A	108427547	4	1	150	1	0	0	0	0	0	1	0	0	15044	835	29	3	1577	3	SORCS1	10	108427547	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4013141	108427547	27107200	383	129233											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118368529	118368529	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacctggcttttgctaaggtGacccaaactcttacaaagct	7	12	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118368529	T	T	118368529	1	4	150	0	1	0	0	0	0	0	0	0	12245	1305	45	3		3	PNLIPRP1	10	118368529	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	9940982	118368529	17166218	384	129234											
C10orf90	118611	broad.mit.edu	37	chr10	128147664	128147664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgcggatgggaaggagGctctgcttctgcctcaggtc	16	10	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128147664	T	T	128147664	3	4	150	1	0	0	0	0	1	0	0	0	1634	1194	42	3	273	3	C10orf90	10	128147664	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	9779135	128147664	7387083	385	129235											
EBF3	253738	broad.mit.edu	37	chr10	131675985	131675985	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagagaattcaaatttggTatgaaaagtcaggaccacgg	10	6	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131675985	A	A	131675985	1	1	150	0	1	0	0	0	0	0	0	0	4922	1653	57	5		5	EBF3	10	131675985	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	3528321	131675985	3858762	386	129236											
ADAM8	101	broad.mit.edu	37	chr10	135084111	135084111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctcccacaacacggtgcGcttgagcctggggtccatgg	12	15	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135084111	A	A	135084111	1	1	150	0	1	0	0	0	0	0	0	0	252	1102	38	4		4	ADAM8	10	135084111	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3408126	135084111	450636	387	129237											
MUC2	4583	broad.mit.edu	37	chr11	1103270	1103270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaccagctcatctcgtccGtctccaacatcacctgcccc	4	20	4	0	rs72655355		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1103270	T	T	1103270	3	4	150	1	0	0	0	0	1	0	0	0	10069	1145	40	3	8194	3	MUC2	11	1103270	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08		1103270	133903246	388	129238											
OR51G1	79324	broad.mit.edu	37	chr11	4945669	4945669	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaatgtcccaagatcagcCagtaaggaagcatctgcaga	9	10	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4945669	A	A	4945669	1	1	150	0	1	0	0	0	0	0	0	0	11192	609	21	2		2	OR51G1	11	4945669	5'Flank	SNP	C	TCGA-50-5045-01A-01D-1625-08	3842399	4945669	130060847	389	129239											
OR52A5	390054	broad.mit.edu	37	chr11	5153348	5153348	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtaagagtgagagatgacTgtagttcgatagtgtttcag	13	4	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5153348	A	A	5153348	2	1	150	1	0	0	0	0	0	0	0	1	11204	1567	55	5		5	OR52A5	11	5153348	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	207679	5153348	129853168	390	129240											
OR52N4	390072	broad.mit.edu	37	chr11	5776362	5776362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtggccatctgctaccCcttacgctattcaactatcc	5	15	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5776362	A	A	5776362	3	1	150	1	0	0	0	0	1	0	0	0	11223	623	22	2	394	2	OR52N4	11	5776362	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	623014	5776362	129230154	391	129241											
SYT9	143425	broad.mit.edu	37	chr11	7334985	7334985	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccctgaaccctgtgtttgAtgaagtgtttttatttccgg	10	8	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7334985	G	G	7334985	3	3	150	1	0	0	0	0	1	0	0	0	15600	333	12	5	867	5	SYT9	11	7334985	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	1558623	7334985	127671531	392	129242											
ABCC8	6833	broad.mit.edu	37	chr11	17424163	17424163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcctgtgccccctggcCccacccctgttccactccta	7	21	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17424163	A	A	17424163	1	1	150	0	1	0	0	0	0	0	0	0	58	638	22	2		2	ABCC8	11	17424163	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	10089178	17424163	117582353	393	129243											
PTPN5	84867	broad.mit.edu	37	chr11	18751016	18751016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctgtcctgacggagctGgcacgtggtcttcaggatgt	14	10	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18751016	T	T	18751016	3	4	150	1	0	0	0	0	1	0	0	0	12899	1357	47	2	117	2	PTPN5	11	18751016	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1326853	18751016	116255500	394	129244											
PEX16	9409	broad.mit.edu	37	chr11	45939056	45939056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatcgacctggggagaggGtacagaaggaggtgtgagtg	19	5	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45939056	T	T	45939056	1	4	150	0	1	0	0	0	0	0	0	0	11838	1276	44	3		3	PEX16	11	45939056	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	27188040	45939056	89067460	395	129245											
OR4A15	81328	broad.mit.edu	37	chr11	55135670	55135670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agataccgtctattctactgCatttgctcccaaaatgattg	6	10	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135670	A	A	55135670	3	1	150	1	0	0	0	0	1	0	0	0	11134	710	25	3	313	3	OR4A15	11	55135670	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	9196614	55135670	79870846	396	129246											
OR5D14	219436	broad.mit.edu	37	chr11	55563167	55563167	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacagtggtaggaaaccttGggatgatcataataatcaag	10	6	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563167	A	A	55563167	3	1	150	1	0	0	0	0	1	0	0	0	11249	1348	47	4	138	4	OR5D14	11	55563167	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	427497	55563167	79443349	397	129247											
OR5D18	219438	broad.mit.edu	37	chr11	55587405	55587405	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatttttaggatgcgtagtAcaattctttttcttctgtac	6	7	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587405	T	T	55587405	2	4	150	1	0	0	0	0	0	0	0	1	11251	378	14	5		5	OR5D18	11	55587405	Silent	SNP	A	TCGA-50-5045-01A-01D-1625-08	24238	55587405	79419111	398	129248											
OR5T2	219464	broad.mit.edu	37	chr11	55999689	55999689	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaactgtagatgacgggatTcagcaagggaatcacaatgg	12	7	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55999689	A	A	55999689	3	1	150	1	0	0	0	0	1	0	0	0	11276	1783	62	5	105	5	OR5T2	11	55999689	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	412284	55999689	79006827	399	129249											
OR5T3	390154	broad.mit.edu	37	chr11	56019785	56019785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatccactgaagaacaagaCtgaagtcaccatgtttatat	7	8	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56019785	A	A	56019785	3	1	150	1	0	0	0	0	1	0	0	0	11277	565	20	3	112	3	OR5T3	11	56019785	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	20096	56019785	78986731	400	129250											
OR5R1	219479	broad.mit.edu	37	chr11	56184894	56184894	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaatacagaagccatcTtgtctgtgtccaaggagtga	10	7	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56184894	A	A	56184894	3	1	150	1	0	0	0	0	1	0	0	0	11274	1609	56	5	161	5	OR5R1	11	56184894	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	165109	56184894	78821622	401	129251											
OR5R1	219479	broad.mit.edu	37	chr11	56185351	56185351	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggcgacatagcaatcgtAggccatggaggctagaagga	15	7	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56185351	T	T	56185351	3	4	150	1	0	0	0	0	1	0	0	0	11274	420	15	5	618	5	OR5R1	11	56185351	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	457	56185351	78821165	402	129252											
ZFP91	80829	broad.mit.edu	37	chr11	58384671	58384671	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttctcctctccttagatGtgagatctgtggatttactt	7	9	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58384671	A	A	58384671	3	1	150	1	0	0	0	0	1	0	0	0	17781	1377	48	4	1247	4	ZFP91	11	58384671	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2199320	58384671	76621845	403	129253											
GLYAT	10249	broad.mit.edu	37	chr11	58482797	58482797	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggaaacttacctgctcctGagggcagacaaccactgtat	9	11	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58482797	T	T	58482797	3	4	150	1	0	0	0	0	1	0	0	0	6543	1299	45	3	729	3	GLYAT	11	58482797	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	98126	58482797	76523719	404	129254											
TMEM132A	54972	broad.mit.edu	37	chr11	60699188	60699188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgtctgagttcctatgGgtggactttgtggtggagaa	15	5	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60699188	T	T	60699188	3	4	150	1	0	0	0	0	1	0	0	0	16168	1241	43	2	1069	2	TMEM132A	11	60699188	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2216391	60699188	74307328	405	129255											
AHNAK	79026	broad.mit.edu	37	chr11	62301093	62301093	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccctcctctgccacccaagtCcaagccctttgcattgacat	5	18	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62301093	G	G	62301093	3	3	150	1	0	0	0	0	1	0	0	0	414	855	30	4	16996	4	AHNAK	11	62301093	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1601905	62301093	72705423	406	129256											
GPR137	56834	broad.mit.edu	37	chr11	64055924	64055924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttcttccgggtgcaccGgcccccacaggacctggtaa	13	15	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64055924	T	T	64055924	3	4	150	1	0	0	0	0	1	0	0	0	6710	1116	39	1	1096	1	GPR137	11	64055924	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1754831	64055924	70950592	407	129257											
PYGM	5837	broad.mit.edu	37	chr11	64521687	64521687	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaagggaaccccgaggcaGagagcatcagatggggcaga	18	8	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64521687	C	C	64521687	1	2	150	0	1	0	0	0	0	0	0	0	12970	957	33	4		4	PYGM	11	64521687	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	465763	64521687	70484829	408	129258											
ANO1	55107	broad.mit.edu	37	chr11	69957775	69957775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgggaagcgggagacccGcctgccccataaccttctct	10	15	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69957775	T	T	69957775	1	4	150	0	1	0	0	0	0	0	0	0	695	1102	38	3		3	ANO1	11	69957775	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5436088	69957775	65048741	409	129259											
PPFIA1	8500	broad.mit.edu	37	chr11	70172854	70172854	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagaactggaagaggatcTggacacggctagaaaagatc	13	7	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70172854	A	A	70172854	3	1	150	1	0	0	0	0	1	0	0	0	12405	1580	55	5	882	5	PPFIA1	11	70172854	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	215079	70172854	64833662	410	129260											
DLG2	1740	broad.mit.edu	37	chr11	84732063	84732063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attattcatatctactgcttGtttgttctgttccttttcaa	4	8	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84732063	T	T	84732063	1	4	150	0	1	0	0	0	0	0	0	0	4595	1392	48	3		3	DLG2	11	84732063	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	14559209	84732063	50274453	411	129261											
FOLH1B	219595	broad.mit.edu	37	chr11	89407165	89407165	+	Intron	DEL	T	-	-													cttcccaaaccatcaatgacTtttttttttttccccaatct					rs72451217		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89407165	-	-	89407165	6	5	150	0	1	1	0	1	0	0	0	0	6038	1624	56	0		0	FOLH1B	11	89407165	Intron	DEL	T	TCGA-50-5045-01A-01D-1625-08	4675102	89407165	45599351	412	129262											
MRE11A	4361	broad.mit.edu	37	chr11	94219247	94219247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accacctaacaaaataaaatCcacctgatcaacagaaaaag	3	11	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94219247	A	A	94219247	3	1	150	1	0	0	0	0	1	0	0	0	9853	855	30	3	2037	3	MRE11A	11	94219247	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4812082	94219247	40787269	413	129263											
TTC12	54970	broad.mit.edu	37	chr11	113234572	113234572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggtgagactgcatcacGttatgctataaagatactag	11	6	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113234572	T	T	113234572	3	4	150	1	0	0	0	0	1	0	0	0	16805	1145	40	3	1813	3	TTC12	11	113234572	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	19015325	113234572	21771944	414	129264											
MLL	4297	broad.mit.edu	37	chr11	118374343	118374343	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggcccaaccaagccccaAtaatacctcatgccaggatt	7	14	1	0	rs147223140		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118374343	G	G	118374343	3	3	150	1	0	0	0	0	1	0	0	0	9713	101	4	5	7833	5	MLL	11	118374343	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	5139771	118374343	16632173	415	129265											
OR8D2	283160	broad.mit.edu	37	chr11	124189170	124189170	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctctttgtcaggatgactgCcttcccctagtcatcttctt	6	14	5	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124189170	G	G	124189170	3	3	150	1	0	0	0	0	1	0	0	0	11326	738	26	4	14	4	OR8D2	11	124189170	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5814827	124189170	10817346	416	129266											
FAM118B	79607	broad.mit.edu	37	chr11	126131433	126131433	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagcagaaagtctttctaGgtccttggttaagaatatag	10	5	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126131433	T	T	126131433	1	4	150	0	1	0	0	0	0	0	0	0	5458	1015	35	2		2	FAM118B	11	126131433	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1942263	126131433	8875083	417	129267											
FLI1	2313	broad.mit.edu	37	chr11	128642774	128642774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacatcctttttccagaaCatggatggcaaggaactgtg	10	9	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128642774	A	A	128642774	3	1	150	1	0	0	0	0	1	0	0	0	5981	477	17	3	497	3	FLI1	11	128642774	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2511341	128642774	6363742	418	129268											
ZBTB44	29068	broad.mit.edu	37	chr11	130131510	130131510	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtggctgtgtaagcatattCtaaaagaggtataaagccag	11	5	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130131510	G	G	130131510	3	3	150	1	0	0	0	0	1	0	0	0	17671	922	32	4	1122	4	ZBTB44	11	130131510	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1488736	130131510	4875006	419	129269											
NCAPD3	23310	broad.mit.edu	37	chr11	134080260	134080260	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctttctttcttttccgattCaagttagattcctggggcca	7	10	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134080260	A	A	134080260	3	1	150	1	0	0	0	0	1	0	0	0	10301	825	29	3	4153	3	NCAPD3	11	134080260	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3948750	134080260	926256	420	129270											
PLEKHG6	55200	broad.mit.edu	37	chr12	6426509	6426509	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctatgtccagtactgcctccGagtgaagcagaccatggctt	10	12	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6426509	A	A	6426509	3	1	150	1	0	0	0	0	1	0	0	0	12169	1058	37	4	869	4	PLEKHG6	12	6426509	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08		6426509	127425386	421	129271											
CHD4	1108	broad.mit.edu	37	chr12	6707377	6707377	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccctacatctccagactatCctaaacttacctgcagttca	3	16	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6707377	T	T	6707377	1	4	150	0	1	0	0	0	0	0	0	0	3358	870	30	4		4	CHD4	12	6707377	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	280868	6707377	127144518	422	129272											
TPI1	7167	broad.mit.edu	37	chr12	6979503	6979504	+	Missense_Mutation	DNP	TC	AA	AA													gcttccttgtgggtggtgctTccctcaagcccgaattcgtg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6979504	AA	AA	6979503	3	1	150	1	0	0	0	0	1	0	0	0	16527	1783	62	5	843	5	TPI1	12	6979503	Missense_Mutation	DNP	TC	TCGA-50-5045-01A-01D-1625-08	272126	6979503	126872392	423	129273											
CD163L1	283316	broad.mit.edu	37	chr12	7522072	7522072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtcatccaaccagatgGttccagttccctggccaaac	8	14	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7522072	T	T	7522072	3	4	150	1	0	0	0	0	1	0	0	0	2998	1261	44	3	461	3	CD163L1	12	7522072	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	542569	7522072	126329823	424	129274											
PZP	5858	broad.mit.edu	37	chr12	9322124	9322124	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggacagtgtccttgttcttCctcctgctggtccacattgt	10	12	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9322124	T	T	9322124	3	4	150	1	0	0	0	0	1	0	0	0	12977	864	30	4	2629	4	PZP	12	9322124	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1800052	9322124	124529771	425	129275											
KLRC1	3821	broad.mit.edu	37	chr12	10601765	10601765	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtatatacccacacatatgGatgatttctacaaatatatt	4	7	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10601765	T	T	10601765	1	4	150	0	1	0	0	0	0	0	0	0	8486	1189	41	3		3	KLRC1	12	10601765	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1279641	10601765	123250130	426	129276											
PRR4	11272	broad.mit.edu	37	chr12	10999703	10999703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggatgtcttgctggtctgtCcctctggaagaatgatgatg	14	7	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10999703	A	A	10999703	3	1	150	1	0	0	0	0	1	0	0	0	12705	855	30	3	44	3	PRR4	12	10999703	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	397938	10999703	122852192	427	129277											
PLCZ1	89869	broad.mit.edu	37	chr12	18848012	18848012	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtctggaaatttaaagcCactgtaagaaagaagtattt	11	4	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18848012	A	A	18848012	2	1	150	1	0	0	0	0	0	0	0	1	12139	608	21	2		2	PLCZ1	12	18848012	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	7848309	18848012	115003883	428	129278											
SLCO1C1	53919	broad.mit.edu	37	chr12	20864473	20864473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttttgacttgactaaaCaagcttttaaaaaaaagact	4	5	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20864473	A	A	20864473	1	1	150	0	1	0	0	0	0	0	0	0	14839	493	17	3		3	SLCO1C1	12	20864473	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2016461	20864473	112987422	429	129279											
SLCO1C1	53919	broad.mit.edu	37	chr12	20890308	20890308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactactagtaggaggcttgCctcttacctctgcctggtcc	9	14	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20890308	A	A	20890308	1	1	150	0	1	0	0	0	0	0	0	0	14839	754	26	3		3	SLCO1C1	12	20890308	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	25835	20890308	112961587	430	129280											
BHLHE41	79365	broad.mit.edu	37	chr12	26276135	26276135	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggatgggggtgggggacggAggagtggaggcaagaagaaa	24	2	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26276135	T	T	26276135	1	4	150	0	1	0	0	0	0	0	0	0	1430	319	11	5		5	BHLHE41	12	26276135	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	5385827	26276135	107575760	431	129281											
TMTC1	83857	broad.mit.edu	37	chr12	29659837	29659837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctaggcgatccaatttgGcaagattttccttcagcagt	8	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29659837	T	T	29659837	3	4	150	1	0	0	0	0	1	0	0	0	16383	1203	42	3	61	3	TMTC1	12	29659837	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3383702	29659837	104192058	432	129282											
PKP2	5318	broad.mit.edu	37	chr12	32975478	32975478	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggatattccggttttgaaTatagatattctgggaatatt	9	4	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32975478	A	A	32975478	3	1	150	1	0	0	0	0	1	0	0	0	12080	1406	49	5	775	5	PKP2	12	32975478	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	3315641	32975478	100876417	433	129283											
PKP2	5318	broad.mit.edu	37	chr12	32975519	32975519	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctgggagctctgcctccAgctggtaggagaggttatga	14	9	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32975519	C	C	32975519	3	2	150	1	0	0	0	0	1	0	0	0	12080	188	7	5	816	5	PKP2	12	32975519	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	41	32975519	100876376	434	129284											
PDZRN4	29951	broad.mit.edu	37	chr12	41831704	41831704	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttcacttgcctttcagttCtggggaaattagaagatttg	10	6	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41831704	G	G	41831704	1	3	150	0	1	0	0	0	0	0	0	0	11804	928	32	4		4	PDZRN4	12	41831704	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	8856185	41831704	92020191	435	129285											
SLC11A2	4891	broad.mit.edu	37	chr12	51399200	51399200	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtgaaagcccagagtttaCgaaagctaaaacaagagtac	10	8	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51399200	T	T	51399200	3	4	150	1	0	0	0	0	1	0	0	0	14494	536	19	4	1616	4	SLC11A2	12	51399200	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	9567496	51399200	82452695	436	129286											
KRT85	3891	broad.mit.edu	37	chr12	52756581	52756581	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacactgtgaagcctgattAgggccaggtgctgcagcctg	14	11	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52756581	T	T	52756581	1	4	150	0	1	0	0	0	0	0	0	0	8570	435	15	5		5	KRT85	12	52756581	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	1357381	52756581	81095314	437	129287											
KRT71	112802	broad.mit.edu	37	chr12	52943961	52943961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttcttgcagttgttcaGgtccagctgctgcagcagct	12	10	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52943961	T	T	52943961	3	4	150	1	0	0	0	0	1	0	0	0	8555	991	35	2	1095	2	KRT71	12	52943961	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	187380	52943961	80907934	438	129288											
PCBP2	5094	broad.mit.edu	37	chr12	53849893	53849893	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactggaccttgagactcGctgtaaatgggtccttagct	10	11	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53849893	T	T	53849893	1	4	150	0	1	0	0	0	0	0	0	0	11595	1102	38	3		3	PCBP2	12	53849893	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	905932	53849893	80002002	439	129289											
LACRT	90070	broad.mit.edu	37	chr12	55025937	55025937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctacctgcttctcaccaGgcttatctctgtgcgtggag	10	12	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55025937	T	T	55025937	1	4	150	0	1	0	0	0	0	0	0	0	8668	1015	35	2		2	LACRT	12	55025937	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1176044	55025937	78825958	440	129290											
SLC26A10	65012	broad.mit.edu	37	chr12	58018712	58018712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtactttgggacccgtGggcagtttcgctgcaacctg	12	12	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58018712	T	T	58018712	3	4	150	1	0	0	0	0	1	0	0	0	14629	1348	47	2	1329	2	SLC26A10	12	58018712	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2992775	58018712	75833183	441	129291											
AGAP2	116986	broad.mit.edu	37	chr12	58125159	58125159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccactcacgttaatactgGggtggtagagtagaaagcca	12	8	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58125159	T	T	58125159	3	4	150	1	0	0	0	0	1	0	0	0	368	1232	43	2	1483	2	AGAP2	12	58125159	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	106447	58125159	75726736	442	129292											
NAV3	89795	broad.mit.edu	37	chr12	78513538	78513538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactaaaattgggtcagggCgctcgagtcctgtcaccgtc	11	12	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78513538	A	A	78513538	3	1	150	1	0	0	0	0	1	0	0	0	10279	768	27	3	3620	3	NAV3	12	78513538	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	20388379	78513538	55338357	443	129293											
EPYC	1833	broad.mit.edu	37	chr12	91371881	91371881	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaccttcatttgtgtgtggCcccagaacccctgtgaattc	9	12	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91371881	G	G	91371881	2	3	150	1	0	0	0	0	0	0	0	1	5243	726	26	4		4	EPYC	12	91371881	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	12858343	91371881	42480014	444	129294											
APAF1	317	broad.mit.edu	37	chr12	99061359	99061359	+	Frame_Shift_Del	DEL	G	-	-													catactctttcaccagatcaGgaagactgtatgtattggta							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99061359	-	-	99061359	7	5	150	1	0	1	0	1	0	0	0	0	757	991	35	0	1465	0	APAF1	12	99061359	Frame_Shift_Del	DEL	G	TCGA-50-5045-01A-01D-1625-08	7689478	99061359	34790536	445	129295											
GCN1L1	10985	broad.mit.edu	37	chr12	120594834	120594834	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtcgagatgaggctgtGgggaggtctgtaacccaggc	17	7	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120594834	A	A	120594834	1	1	150	0	1	0	0	0	0	0	0	0	6361	1363	47	4		4	GCN1L1	12	120594834	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	21533475	120594834	13257061	446	129296											
HNF1A	6927	broad.mit.edu	37	chr12	121434172	121434172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccaagtgtcccccacgGgcctggagcccagccacagc	10	19	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121434172	T	T	121434172	3	4	150	1	0	0	0	0	1	0	0	0	7318	1232	43	2	1081	2	HNF1A	12	121434172	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	839338	121434172	12417723	447	129297											
PITPNM2	57605	broad.mit.edu	37	chr12	123489893	123489893	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgggctccgggggctcCccagaggtctggtccgagac	16	14	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123489893	T	T	123489893	2	4	150	1	0	0	0	0	0	0	0	1	12046	610	22	4		4	PITPNM2	12	123489893	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	2055721	123489893	10362002	448	129298											
ATP8A2	51761	broad.mit.edu	37	chr13	26411447	26411447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagagtgtgatctcagaaCtgtcacctcagaaaggcgtg	11	9	3	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26411447	A	A	26411447	1	1	150	0	1	0	0	0	0	0	0	0	1197	580	20	3		3	ATP8A2	13	26411447	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08		26411447	88758431	449	129299											
CYSLTR2	57105	broad.mit.edu	37	chr13	49281393	49281393	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttcacccctttcggcttcTgcatgtcaccagcatcagga	9	14	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49281393	A	A	49281393	3	1	150	1	0	0	0	0	1	0	0	0	4235	1580	55	5	442	5	CYSLTR2	13	49281393	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	22869946	49281393	65888485	450	129300											
SLITRK1	114798	broad.mit.edu	37	chr13	84454067	84454067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaggggtttccgtggaGgtctatctggatgatggagg	16	8	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84454067	T	T	84454067	3	4	150	1	0	0	0	0	1	0	0	0	14856	1000	35	2	518	2	SLITRK1	13	84454067	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	35172674	84454067	30715811	451	129301											
GPC5	2262	broad.mit.edu	37	chr13	92560248	92560248	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtctggaaatcctgaagtCaaagtcaaaggaattgatcc	9	8	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92560248	T	T	92560248	2	4	150	1	0	0	0	0	0	0	0	1	6666	813	29	4		4	GPC5	13	92560248	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	8106181	92560248	22609630	452	129302											
ABCC4	10257	broad.mit.edu	37	chr13	95840797	95840797	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagttggggtctctgatgcCtacaaattaaagtttataaa	9	5	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95840797	A	A	95840797	5	1	150	1	0	0	0	0	0	0	1	0	55	695	24	2	2851	2	ABCC4	13	95840797	Splice_Site	SNP	C	TCGA-50-5045-01A-01D-1625-08	3280549	95840797	19329081	453	129303											
HS6ST3	266722	broad.mit.edu	37	chr13	97485160	97485160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacctcaagttcatctcccCcttcacacagttcaacatca	2	17	6	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97485160	A	A	97485160	3	1	150	1	0	0	0	0	1	0	0	0	7439	623	22	2	1130	2	HS6ST3	13	97485160	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1644363	97485160	17684718	454	129304											
ITGBL1	9358	broad.mit.edu	37	chr13	102250508	102250508	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctcactgtgaaggtcatGgacagtgtaattgcggaaga	12	7	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102250508	T	T	102250508	4	4	150	1	0	0	0	0	0	1	0	0	7972	1349	47	2	900	2	ITGBL1	13	102250508	Nonsense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4765348	102250508	12919370	455	129305											
FGF14	2259	broad.mit.edu	37	chr13	102454321	102454321	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaacataaaaagaaaaacCcagaggtccctgtcaattta	6	8	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102454321	T	T	102454321	1	4	150	0	1	0	0	0	0	0	0	0	5900	638	22	4		4	FGF14	13	102454321	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	203813	102454321	12715557	456	129306											
COL4A2	1284	broad.mit.edu	37	chr13	111119357	111119357	+	Intron	DEL	G	-	-													ctcagtgtttaggattgcttGggctcatcttttctcctttc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111119357	-	-	111119357	6	5	150	0	1	1	0	1	0	0	0	0	3722	1363	47	0		0	COL4A2	13	111119357	Intron	DEL	G	TCGA-50-5045-01A-01D-1625-08	8665036	111119357	4050521	457	129307											
COL4A2	1284	broad.mit.edu	37	chr13	111138029	111138029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatgccaggcatcccagGgctgtcaggaatccctgggc	14	12	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111138029	T	T	111138029	3	4	150	1	0	0	0	0	1	0	0	0	3722	1232	43	2	3183	2	COL4A2	13	111138029	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	18672	111138029	4031849	458	129308											
ARHGEF7	8874	broad.mit.edu	37	chr13	111862127	111862127	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcttttggtgtgtccctctGtgctgccctagttttaaagt	10	9	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111862127	C	C	111862127	1	2	150	0	1	0	0	0	0	0	0	0	913	1392	48	4		4	ARHGEF7	13	111862127	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	724098	111862127	3307751	459	129309											
OR11H12	440153	broad.mit.edu	37	chr14	19378025	19378025	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccttgctatctgccgtccCttgctctatcctaatatcat	4	14	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19378025	T	T	19378025	2	4	150	1	0	0	0	0	0	0	0	1	11021	668	24	4		4	OR11H12	14	19378025	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08		19378025	87971515	460	129310											
OR4M1	441670	broad.mit.edu	37	chr14	20249073	20249073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccttcccagaggagttaGtgatgatctgtagtagtggt	12	7	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20249073	T	T	20249073	3	4	150	1	0	0	0	0	1	0	0	0	11169	1029	36	3	594	3	OR4M1	14	20249073	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	871048	20249073	87100467	461	129311											
OR4K1	79544	broad.mit.edu	37	chr14	20404246	20404246	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caattatgaaccggaggctcTgtgtaatttttgtgtctatt	9	6	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20404246	G	G	20404246	3	3	150	1	0	0	0	0	1	0	0	0	11161	1580	55	5	423	5	OR4K1	14	20404246	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	155173	20404246	86945294	462	129312											
MMP14	4323	broad.mit.edu	37	chr14	23312766	23312766	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctctatcagctccacttttGagcccatcttttgtgtcgcc	6	15	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23312766	A	A	23312766	1	1	150	0	1	0	0	0	0	0	0	0	9746	1305	45	4		4	MMP14	14	23312766	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	2908520	23312766	84036774	463	129313											
CTSG	1511	broad.mit.edu	37	chr14	25043078	25043078	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctcctgcttccctgagctCcgggctctcagggaaggcag	13	14	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25043078	A	A	25043078	1	1	150	0	1	0	0	0	0	0	0	0	4069	870	30	3		3	CTSG	14	25043078	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1730312	25043078	82306462	464	129314											
GZMH	2999	broad.mit.edu	37	chr14	25078744	25078744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagatgggttcaggcctctGgaatagggatagtcacttac	12	7	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25078744	T	T	25078744	1	4	150	0	1	0	0	0	0	0	0	0	6982	1363	47	2		2	GZMH	14	25078744	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	35666	25078744	82270796	465	129315											
EAPP	55837	broad.mit.edu	37	chr14	35002630	35002630	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaaatataactgctaaacCtggtaaataggttacttacc	5	7	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35002630	G	G	35002630	1	3	150	0	1	0	0	0	0	0	0	0	4917	696	24	4		4	EAPP	14	35002630	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	9923886	35002630	72346910	466	129316											
CLEC14A	161198	broad.mit.edu	37	chr14	38724645	38724645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctgtgcagctggaaggGcgcgcgatagctcaagttag	17	9	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38724645	T	T	38724645	3	4	150	1	0	0	0	0	1	0	0	0	3531	1203	42	3	893	3	CLEC14A	14	38724645	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3722015	38724645	68624895	467	129317											
FSCB	84075	broad.mit.edu	37	chr14	44975848	44975848	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtttggtggaatttctaCatcctgaacactctctggca	8	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44975848	T	T	44975848	3	4	150	1	0	0	0	0	1	0	0	0	6126	478	17	4	2138	4	FSCB	14	44975848	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	6251203	44975848	62373692	468	129318											
KLHL28	54813	broad.mit.edu	37	chr14	45403187	45403187	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaattacaattatatccaTggagcagattaagtttccca	5	8	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45403187	A	A	45403187	1	1	150	0	1	0	0	0	0	0	0	0	8453	1479	51	5		5	KLHL28	14	45403187	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	427339	45403187	61946353	469	129319											
RPL10L	140801	broad.mit.edu	37	chr14	47120666	47120666	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggatgacatggaagggatGgagccgcactcgcatgtgaa	16	8	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47120666	T	T	47120666	3	4	150	1	0	0	0	0	1	0	0	0	13667	1348	47	2	374	2	RPL10L	14	47120666	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1717479	47120666	60228874	470	129320											
TMX1	81542	broad.mit.edu	37	chr14	51706885	51706885	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactgggatcagacccctgtCatgcgcattgagagtcctct	10	13	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51706885	T	T	51706885	1	4	150	0	1	0	0	0	0	0	0	0	16389	841	29	4		4	TMX1	14	51706885	5'Flank	SNP	C	TCGA-50-5045-01A-01D-1625-08	4586219	51706885	55642655	471	129321											
FRMD6	122786	broad.mit.edu	37	chr14	52188670	52188670	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttcttctgtgtcagaaaTagagatgttggttgatgacc	10	7	3	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52188670	A	A	52188670	3	1	150	1	0	0	0	0	1	0	0	0	6114	1406	49	5	1382	5	FRMD6	14	52188670	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	481785	52188670	55160870	472	129322											
C14orf101	54916	broad.mit.edu	37	chr14	57075769	57075769	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgatatgttcttgaagttccGagatgaatctactaaaataa	7	5	2	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57075769	A	A	57075769	1	1	150	0	1	0	0	0	0	0	0	0	1747	1073	37	4		4	C14orf101	14	57075769	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	4887099	57075769	50273771	473	129323											
DACT1	51339	broad.mit.edu	37	chr14	59112813	59112813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccaaaagagagtcctaGcagaggccctgccccgccgc	10	17	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59112813	T	T	59112813	3	4	150	1	0	0	0	0	1	0	0	0	4255	971	34	3	1486	3	DACT1	14	59112813	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2037044	59112813	48236727	474	129324											
TSHR	7253	broad.mit.edu	37	chr14	81609541	81609541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaagagactctacaagCttttgacagccattatgact	8	10	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81609541	A	A	81609541	3	1	150	1	0	0	0	0	1	0	0	0	16747	797	28	3	1314	3	TSHR	14	81609541	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	22496728	81609541	25739999	475	129325											
KIAA1409	57578	broad.mit.edu	37	chr14	94156389	94156389	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acactttcaatcccttccttCaataagcatttgttatgcac	3	12	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94156389	T	T	94156389	1	4	150	0	1	0	0	0	0	0	0	0	8300	841	29	4		4	KIAA1409	14	94156389	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	12546848	94156389	13193151	476	129326											
BCL11B	64919	broad.mit.edu	37	chr14	99640499	99640499	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccgcgcgcttagctcctctCggcctgctcgattttgacgt	10	16	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99640499	A	A	99640499	4	1	150	1	0	0	0	0	0	1	0	0	1369	893	31	3	14	3	BCL11B	14	99640499	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5484110	99640499	7709041	477	129327											
HERC2	8924	broad.mit.edu	37	chr15	28467330	28467330	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaccttgagcagaagcattCatatcttcctcaacgttgtc	7	12	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28467330	A	A	28467330	3	1	150	1	0	0	0	0	1	0	0	0	7125	826	29	3	9240	3	HERC2	15	28467330	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08		28467330	74064062	478	129328											
SPINT1	6692	broad.mit.edu	37	chr15	41149044	41149044	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatcttgggttactgcttCttcaagaaccagagaaagga	10	9	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41149044	T	T	41149044	2	4	150	1	0	0	0	0	0	0	0	1	15186	912	32	4		4	SPINT1	15	41149044	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	12681714	41149044	61382348	479	129329											
INO80	54617	broad.mit.edu	37	chr15	41364283	41364283	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaaaaaaaaaaaaaattaGaaaaaaaaaaaagaggaaaa	5	0	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41364283	A	A	41364283	1	1	150	0	1	0	0	0	0	0	0	0	7816	957	33	4		4	INO80	15	41364283	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	215239	41364283	61167109	480	129330											
TGM5	9333	broad.mit.edu	37	chr15	43560260	43560260	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatattctccaacctggcCtttgagagagacacccactc	6	15	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43560260	A	A	43560260	1	1	150	0	1	0	0	0	0	0	0	0	15956	696	24	2		2	TGM5	15	43560260	5'Flank	SNP	C	TCGA-50-5045-01A-01D-1625-08	2195977	43560260	58971132	481	129331											
TGM7	116179	broad.mit.edu	37	chr15	43568860	43568860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgaggacttcctgctggCggcaggggtgatctggttcc	15	12	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43568860	T	T	43568860	1	4	150	0	1	0	0	0	0	0	0	0	15958	783	27	4		4	TGM7	15	43568860	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	8600	43568860	58962532	482	129332											
C15orf33	196951	broad.mit.edu	37	chr15	49800533	49800533	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggatccaaaagccttttTgaggttttaaacctgttaat	8	6	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49800533	C	C	49800533	3	2	150	1	0	0	0	0	1	0	0	0	1804	1812	63	5	663	5	C15orf33	15	49800533	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	6231673	49800533	52730859	483	129333											
ANKDD1A	348094	broad.mit.edu	37	chr15	65242117	65242117	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcatttggctgcatggCgtggccacggctggtgagaa	15	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65242117	A	A	65242117	2	1	150	1	0	0	0	0	0	0	0	1	624	755	27	3		3	ANKDD1A	15	65242117	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	15441584	65242117	37289275	484	129334											
LOXL1	4016	broad.mit.edu	37	chr15	74219594	74219594	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcacgggggctccgcctcctCggtctcggcttcggccttcg	14	17	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74219594	A	A	74219594	4	1	150	1	0	0	0	0	0	1	0	0	8986	893	31	3	472	3	LOXL1	15	74219594	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	8977477	74219594	28311798	485	129335											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84488795	84488795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtgtatcagtggcatctGtcaggtaagcacacttacct	9	10	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84488795	T	T	84488795	3	4	150	1	0	0	0	0	1	0	0	0	276	1377	48	3	614	3	ADAMTSL3	15	84488795	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	10269201	84488795	18042597	486	129336											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84553886	84553886	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagccaaagacagcgtggttCagttcttcttttaccagccc	8	13	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84553886	G	G	84553886	3	3	150	1	0	0	0	0	1	0	0	0	276	827	29	4	1028	4	ADAMTSL3	15	84553886	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	65091	84553886	17977506	487	129337											
MAN2A2	4122	broad.mit.edu	37	chr15	91450651	91450651	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccaatttgatttcaaacgCctgcctggtgggcgcatcaa	10	11	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91450651	T	T	91450651	2	4	150	1	0	0	0	0	0	0	0	1	9307	726	26	4		4	MAN2A2	15	91450651	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	6896765	91450651	11080741	488	129338											
ST8SIA2	8128	broad.mit.edu	37	chr15	92988094	92988094	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtgggtcaacgagcttatCctgaagcaccacgtcaacgt	11	11	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92988094	A	A	92988094	2	1	150	1	0	0	0	0	0	0	0	1	15350	845	30	3		3	ST8SIA2	15	92988094	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	1537443	92988094	9543298	489	129339											
FAM169B	283777	broad.mit.edu	37	chr15	99023777	99023777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccaggccaggcagaccCctagacagccccactcagtc	8	20	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99023777	A	A	99023777	1	1	150	0	1	0	0	0	0	0	0	0	5533	638	22	2		2	FAM169B	15	99023777	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	6035683	99023777	3507615	490	129340											
CHSY1	22856	broad.mit.edu	37	chr15	101719238	101719238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtattgtatgattgagtgcCagcacatgctaaagaaaatg	10	5	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101719238	A	A	101719238	1	1	150	0	1	0	0	0	0	0	0	0	3443	609	21	2		2	CHSY1	15	101719238	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2695461	101719238	812154	491	129341											
BAIAP3	8938	broad.mit.edu	37	chr16	1392054	1392054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagtcatcggcctgaagGgcatgggcaggtatgactgc	15	8	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1392054	T	T	1392054	3	4	150	1	0	0	0	0	1	0	0	0	1309	1232	43	2	987	2	BAIAP3	16	1392054	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08		1392054	88962699	492	129342											
PTX4	390667	broad.mit.edu	37	chr16	1537612	1537612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccctccagagcagccagCctggcgccctggctgtggac	13	18	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1537612	A	A	1537612	3	1	150	1	0	0	0	0	1	0	0	0	12931	738	26	3	942	3	PTX4	16	1537612	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	145558	1537612	88817141	493	129343											
PKD1	5310	broad.mit.edu	37	chr16	2161931	2161931	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccacctgctccccacccgctCggcagaagccccccgcctga	8	23	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2161931	G	G	2161931	1	3	150	0	1	0	0	0	0	0	0	0	12058	899	31	4		4	PKD1	16	2161931	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	624319	2161931	88192822	494	129344											
OR1F1	4992	broad.mit.edu	37	chr16	3254471	3254471	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggacatctgcttctccttCaccaccgtccccaagatgct	7	16	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3254471	A	A	3254471	3	1	150	1	0	0	0	0	1	0	0	0	11050	825	29	3	227	3	OR1F1	16	3254471	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1092540	3254471	87100282	495	129345											
USP7	7874	broad.mit.edu	37	chr16	8999107	8999107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagtgtcgaacagacaggtCgtcatcgtgacccccataat	10	12	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8999107	A	A	8999107	3	1	150	1	0	0	0	0	1	0	0	0	17215	884	31	3	1870	3	USP7	16	8999107	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5744636	8999107	81355646	496	129346											
GRIN2A	2903	broad.mit.edu	37	chr16	10031830	10031830	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttacgggtgcaaggtgtgCatcgggacctctggcctctc	13	12	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10031830	T	T	10031830	3	4	150	1	0	0	0	0	1	0	0	0	6845	710	25	4	3445	4	GRIN2A	16	10031830	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1032723	10031830	80322923	497	129347											
RSL1D1	26156	broad.mit.edu	37	chr16	11933938	11933938	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagttttgattatccataaGcccctaaatggacctcgatc	7	11	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11933938	A	A	11933938	1	1	150	0	1	0	0	0	0	0	0	0	13811	986	34	4		4	RSL1D1	16	11933938	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1902108	11933938	78420815	498	129348											
XYLT1	64131	broad.mit.edu	37	chr16	17202811	17202811	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaggacggggtttaggCtctggaagctctgctccatg	16	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17202811	G	G	17202811	3	3	150	1	0	0	0	0	1	0	0	0	17590	797	28	4	262	4	XYLT1	16	17202811	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5268873	17202811	73151942	499	129349											
UMOD	7369	broad.mit.edu	37	chr16	20347987	20347987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttccgtgtgatgggaccCaagttcaggacacgggattg	13	10	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20347987	A	A	20347987	3	1	150	1	0	0	0	0	1	0	0	0	17105	593	21	2	131	2	UMOD	16	20347987	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	3145176	20347987	70006766	500	129350											
OTOA	146183	broad.mit.edu	37	chr16	21689935	21689935	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attccaggcagggtaagtccTgagggaagaatcaccctttg	12	9	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21689935	A	A	21689935	1	1	150	0	1	0	0	0	0	0	0	0	11396	1595	55	5		5	OTOA	16	21689935	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	1341948	21689935	68664818	501	129351											
VWA3A	146177	broad.mit.edu	37	chr16	22155616	22155616	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagctggagatttccagaTgcatgggtcccaactgcact	11	10	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22155616	A	A	22155616	3	1	150	1	0	0	0	0	1	0	0	0	17367	1464	51	5	2743	5	VWA3A	16	22155616	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	465681	22155616	68199137	502	129352											
ARHGAP17	55114	broad.mit.edu	37	chr16	24966125	24966125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctattttctccccaactacCcaatgggcttttctagccga	6	14	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24966125	A	A	24966125	1	1	150	0	1	0	0	0	0	0	0	0	869	638	22	2		2	ARHGAP17	16	24966125	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2810509	24966125	65388628	503	129353											
SETD1A	9739	broad.mit.edu	37	chr16	30972899	30972899	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactcaggcttggcctccagCggaggttgtacatgcaaatg	12	11	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30972899	G	G	30972899	1	3	150	0	1	0	0	0	0	0	0	0	14243	783	27	4		4	SETD1A	16	30972899	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	6006774	30972899	59381854	504	129354											
TRIM72	493829	broad.mit.edu	37	chr16	31230609	31230609	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcactgccccatccctgcaGgagacagtgcgtcagttccg	10	15	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31230609	T	T	31230609	5	4	150	1	0	0	0	0	0	0	1	0	16670	1014	35	2	496	2	TRIM72	16	31230609	Splice_Site	SNP	G	TCGA-50-5045-01A-01D-1625-08	257710	31230609	59124144	505	129355											
ITFG1	81533	broad.mit.edu	37	chr16	47485263	47485263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaatggttaaagtagaagCaatatatacgattaattaca	6	5	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47485263	A	A	47485263	1	1	150	0	1	0	0	0	0	0	0	0	7939	725	25	3		3	ITFG1	16	47485263	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	16254654	47485263	42869490	506	129356											
CES7	221223	broad.mit.edu	37	chr16	55897269	55897269	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtatacgtacgtcctcactCttctcataatcatgggcctc	6	13	4	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55897269	A	A	55897269	3	1	150	1	0	0	0	0	1	0	0	0	3302	912	32	3	958	3	CES7	16	55897269	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	8412006	55897269	34457484	507	129357											
RSPRY1	89970	broad.mit.edu	37	chr16	57255297	57255297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtcatgcagattggctgGgccactcgagacagcaaatt	13	10	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57255297	T	T	57255297	3	4	150	1	0	0	0	0	1	0	0	0	13824	1241	43	2	1165	2	RSPRY1	16	57255297	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1358028	57255297	33099456	508	129358											
CTCF	10664	broad.mit.edu	37	chr16	67662542	67662542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatggtagtttttttcaCtgaggttataaacagagatg	11	4	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67662542	T	T	67662542	1	4	150	0	1	0	0	0	0	0	0	0	4034	580	20	4		4	CTCF	16	67662542	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	10407245	67662542	22692211	509	129359											
SNTB2	6645	broad.mit.edu	37	chr16	69304105	69304105	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggctgtgactgagaaGgatttgctgctctatgactg	12	8	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69304105	C	C	69304105	3	2	150	1	0	0	0	0	1	0	0	0	14987	991	35	4	1079	4	SNTB2	16	69304105	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1641563	69304105	21050648	510	129360											
PMFBP1	83449	broad.mit.edu	37	chr16	72162918	72162919	+	Intron	DNP	CC	AA	AA													aggcccaggtggggtcatgtCccgctctggattcctgaccc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72162919	AA	AA	72162918	1	1	150	0	1	0	0	0	0	0	0	0	12229	870	30	3		3	PMFBP1	16	72162918	Intron	DNP	CC	TCGA-50-5045-01A-01D-1625-08	2858813	72162918	18191835	511	129361											
CNTNAP4	85445	broad.mit.edu	37	chr16	76495885	76495885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgggcagtggcattctGtctctttatctgctaaaaag	10	7	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76495885	T	T	76495885	3	4	150	1	0	0	0	0	1	0	0	0	3681	1377	48	3	1413	3	CNTNAP4	16	76495885	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4332967	76495885	13858868	512	129362											
PLCG2	5336	broad.mit.edu	37	chr16	81929382	81929382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcagtgaacacacgtgGtattgaggctgccgcgtttc	13	10	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81929382	T	T	81929382	1	4	150	0	1	0	0	0	0	0	0	0	12131	1276	44	3		3	PLCG2	16	81929382	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5433497	81929382	8425371	513	129363											
TAF1C	9013	broad.mit.edu	37	chr16	84217022	84217022	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcccactcacctgctcAgtcacatccagcacgactcg	9	17	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84217022	T	T	84217022	2	4	150	1	0	0	0	0	0	0	0	1	15640	175	7	5		5	TAF1C	16	84217022	Silent	SNP	A	TCGA-50-5045-01A-01D-1625-08	2287640	84217022	6137731	514	129364											
GLOD4	51031	broad.mit.edu	37	chr17	685385	685385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctcgcgcgccagccCctgtcggccccggcctgcac	11	22	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	685385	A	A	685385	1	1	150	0	1	0	0	0	0	0	0	0	6514	638	22	2		2	GLOD4	17	685385	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08		685385	80509825	515	129365											
ZFP3	124961	broad.mit.edu	37	chr17	4995008	4995008	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcaggagagagactttcCatcagggttgatgatcttta	10	8	3	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4995008	T	T	4995008	3	4	150	1	0	0	0	0	1	0	0	0	17769	594	21	4	211	4	ZFP3	17	4995008	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	4309623	4995008	76200202	516	129366											
TP53	7157	broad.mit.edu	37	chr17	7578224	7578224	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actatgtcgaaaagtgtttcTgtcatccaaatactccacac	5	11	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578224	A	A	7578224	4	1	150	1	0	0	0	0	0	1	0	0	16505	1588	55	5	669	5	TP53	17	7578224	Nonsense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	2583216	7578224	73616986	517	129367											
MYH13	8735	broad.mit.edu	37	chr17	10258026	10258026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcagttcttcactgtcatCgatactggctaccgtgacct	8	13	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10258026	A	A	10258026	3	1	150	1	0	0	0	0	1	0	0	0	10126	884	31	3	4964	3	MYH13	17	10258026	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2679802	10258026	70937184	518	129368											
MYH1	4619	broad.mit.edu	37	chr17	10411814	10411814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcaatgttgtagtccacgGtgccagcatagtgaatcaaa	11	9	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10411814	T	T	10411814	3	4	150	1	0	0	0	0	1	0	0	0	10123	1261	44	3	4156	3	MYH1	17	10411814	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	153788	10411814	70783396	519	129369											
MYH2	4620	broad.mit.edu	37	chr17	10432387	10432387	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttcctcctccagctcctCaatgcgggcctgggaatggt	11	13	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10432387	G	G	10432387	3	3	150	1	0	0	0	0	1	0	0	0	10129	835	29	4	2517	4	MYH2	17	10432387	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	20573	10432387	70762823	520	129370											
DNAH9	1770	broad.mit.edu	37	chr17	11687958	11687958	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccagctcataggcacagGcaaagccactgttcatatgt	9	12	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11687958	T	T	11687958	1	4	150	0	1	0	0	0	0	0	0	0	4648	1218	42	3		3	DNAH9	17	11687958	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1255571	11687958	69507252	521	129371											
MYOCD	93649	broad.mit.edu	37	chr17	12656293	12656293	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcagagaagaagccgcTgcctttcctggctgcctcca	10	14	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12656293	A	A	12656293	3	1	150	1	0	0	0	0	1	0	0	0	10181	1580	55	5	1726	5	MYOCD	17	12656293	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	968335	12656293	68538917	522	129372											
ZNF287	57336	broad.mit.edu	37	chr17	16470621	16470621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacccagggattcctcccCtctctgctctatgattctca	5	17	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16470621	A	A	16470621	1	1	150	0	1	0	0	0	0	0	0	0	17951	696	24	2		2	ZNF287	17	16470621	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	3814328	16470621	64724589	523	129373											
FAM83G	644815	broad.mit.edu	37	chr17	18881050	18881050	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagctgccggcgcggtggTggggttggcccgttggccac	18	13	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18881050	A	A	18881050	2	1	150	1	0	0	0	0	0	0	0	1	5692	1683	59	5		5	FAM83G	17	18881050	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	2410429	18881050	62314160	524	129374											
NOS2	4843	broad.mit.edu	37	chr17	26109133	26109133	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcgggcatcgaagacCtgcaacagcccatccagacc	10	16	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26109133	A	A	26109133	5	1	150	1	0	0	0	0	0	0	1	0	10638	695	24	2	2915	2	NOS2	17	26109133	Splice_Site	SNP	C	TCGA-50-5045-01A-01D-1625-08	7228083	26109133	55086077	525	129375											
TRAF4	9618	broad.mit.edu	37	chr17	27074993	27074993	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgatgtgagggctggcacCacctctcccttggcaggcac	12	14	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27074993	T	T	27074993	1	4	150	0	1	0	0	0	0	0	0	0	16567	609	21	4		4	TRAF4	17	27074993	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	965860	27074993	54120217	526	129376											
SSH2	85464	broad.mit.edu	37	chr17	28003936	28003936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaacaagacaaaaatccaCaaattagggtaggttatttg	9	5	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28003936	A	A	28003936	1	1	150	0	1	0	0	0	0	0	0	0	15303	493	17	3		3	SSH2	17	28003936	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	928943	28003936	53191274	527	129377											
NF1	4763	broad.mit.edu	37	chr17	29665721	29665721	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaattctgttttcctaaaaGgcacttgagagttgcttaaa	7	6	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29665721	C	C	29665721	5	2	150	1	0	0	0	0	0	0	1	0	10451	1014	35	4	7062	4	NF1	17	29665721	Splice_Site	SNP	G	TCGA-50-5045-01A-01D-1625-08	1661785	29665721	51529489	528	129378											
KRT28	162605	broad.mit.edu	37	chr17	38955177	38955177	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtcacttactttagcctGaaatcatcagcagccagtct	6	12	5	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38955177	T	T	38955177	3	4	150	1	0	0	0	0	1	0	0	0	8536	1281	45	3	897	3	KRT28	17	38955177	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	9289456	38955177	42240033	529	129379											
C17orf57	124989	broad.mit.edu	37	chr17	45471442	45471442	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatactatgatgagcaacaCggaatgcttctctgaaaaat	8	7	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45471442	T	T	45471442	3	4	150	1	0	0	0	0	1	0	0	0	1881	536	19	4	1828	4	C17orf57	17	45471442	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	6516265	45471442	35723768	530	129380											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46056306	46056306	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtcatctctggaagatgCaggggggaggcatggcacca	15	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46056306	T	T	46056306	1	4	150	0	1	0	0	0	0	0	0	0	3177	725	25	4		4	CDK5RAP3	17	46056306	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	584864	46056306	35138904	531	129381											
WFIKKN2	124857	broad.mit.edu	37	chr17	48917698	48917698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacttcgatgcccaggCcaacaactgcctgaccttca	8	16	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48917698	A	A	48917698	3	1	150	1	0	0	0	0	1	0	0	0	17486	739	26	3	1055	3	WFIKKN2	17	48917698	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2861392	48917698	32277512	532	129382											
LPO	4025	broad.mit.edu	37	chr17	56324947	56324947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccgcaatggacaggtgtgGgaggagtctttaaagagact	14	6	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56324947	T	T	56324947	3	4	150	1	0	0	0	0	1	0	0	0	9009	1241	43	2	283	2	LPO	17	56324947	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	7407249	56324947	24870263	533	129383											
MTMR4	9110	broad.mit.edu	37	chr17	56584622	56584622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcagcattgcgccagcCccaccagctgatctctggct	8	16	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56584622	A	A	56584622	3	1	150	1	0	0	0	0	1	0	0	0	10040	623	22	2	2907	2	MTMR4	17	56584622	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	259675	56584622	24610588	534	129384											
GH2	2689	broad.mit.edu	37	chr17	61958369	61958369	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctaccccatccccacctgGggagaaggcatccactcaca	8	17	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61958369	A	A	61958369	1	1	150	0	1	0	0	0	0	0	0	0	6432	1247	43	4		4	GH2	17	61958369	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5373747	61958369	19236841	535	129385											
TTYH2	94015	broad.mit.edu	37	chr17	72233552	72233552	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcatacagcagatggcGggcagcgttgttgttcagct	13	8	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72233552	T	T	72233552	2	4	150	1	0	0	0	0	0	0	0	1	16866	1103	39	1		1	TTYH2	17	72233552	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	10275183	72233552	8961658	536	129386											
SEPT9	10801	broad.mit.edu	37	chr17	75303140	75303140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcaggagcaaaggcgaGgacattcctggtgttaatca	12	9	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75303140	T	T	75303140	1	4	150	0	1	0	0	0	0	0	0	0	14184	1015	35	2		2	SEPT9	17	75303140	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3069588	75303140	5892070	537	129387											
CETN1	1068	broad.mit.edu	37	chr18	580817	580817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacgagctgggggagaacCtcacggatgaggagctgcag	16	10	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	580817	A	A	580817	3	1	150	1	0	0	0	0	1	0	0	0	3304	681	24	2	411	2	CETN1	18	580817	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08		580817	77496431	538	129388											
SMCHD1	23347	broad.mit.edu	37	chr18	2775813	2775813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtgacatggactgtgtaGtcaccctaaccactgacgct	9	12	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2775813	T	T	2775813	3	4	150	1	0	0	0	0	1	0	0	0	14902	1029	36	3	5423	3	SMCHD1	18	2775813	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	2194996	2775813	75301435	539	129389											
EPB41L3	23136	broad.mit.edu	37	chr18	5397198	5397198	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctccttcctctttagcCccctccgtcaaggcagagcc	6	20	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5397198	A	A	5397198	2	1	150	1	0	0	0	0	0	0	0	1	5196	610	22	2		2	EPB41L3	18	5397198	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	2621385	5397198	72680050	540	129390											
L3MBTL4	91133	broad.mit.edu	37	chr18	6237960	6237960	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaacccaggcagtccactCaccttggggtgctatcagag	11	12	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6237960	A	A	6237960	1	1	150	0	1	0	0	0	0	0	0	0	8666	841	29	3		3	L3MBTL4	18	6237960	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	840762	6237960	71839288	541	129391											
FAM38B	63895	broad.mit.edu	37	chr18	10696433	10696433	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgatgatgaagtccacaGtgtcagccaggaacatgagt	11	8	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10696433	A	A	10696433	3	1	150	1	0	0	0	0	1	0	0	0	5606	1029	36	4	1709	4	FAM38B	18	10696433	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	4458473	10696433	67380815	542	129392											
MC5R	4161	broad.mit.edu	37	chr18	13825905	13825905	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtgtttctcactctgggTgtcatcagcctcttggagaa	12	9	5	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13825905	G	G	13825905	2	3	150	1	0	0	0	0	0	0	0	1	9460	1683	59	5		5	MC5R	18	13825905	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	3129472	13825905	64251343	543	129393											
POTEC	388468	broad.mit.edu	37	chr18	14542797	14542797	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtagtctccccaagcgcccaCgttgctcttgccgctccccc	8	20	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14542797	G	G	14542797	3	3	150	1	0	0	0	0	1	0	0	0	12358	536	19	4	1323	4	POTEC	18	14542797	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	716892	14542797	63534451	544	129394											
DSC2	1824	broad.mit.edu	37	chr18	28648808	28648808	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatccagttagttatttaTaaagtttaaagaaaattaaa	5	2	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28648808	A	A	28648808	1	1	150	0	1	0	0	0	0	0	0	0	4806	1421	49	5		5	DSC2	18	28648808	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	14106011	28648808	49428440	545	129395											
DSG1	1828	broad.mit.edu	37	chr18	28923328	28923328	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagaattatattacgaattCaaatttaaccataaaaaatc	2	7	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28923328	A	A	28923328	1	1	150	0	1	0	0	0	0	0	0	0	4816	841	29	3		3	DSG1	18	28923328	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	274520	28923328	49153920	546	129396											
NOL4	8715	broad.mit.edu	37	chr18	31709869	31709869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttgtccagcgtgtttcCgaatttgttctccatttggc	8	10	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31709869	A	A	31709869	3	1	150	1	0	0	0	0	1	0	0	0	10619	652	23	1	1576	1	NOL4	18	31709869	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2786541	31709869	46367379	547	129397											
SLC39A6	25800	broad.mit.edu	37	chr18	33702072	33702072	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacatgttcaacaagaaaCatgaaatacaggcctcctag	8	9	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33702072	T	T	33702072	3	4	150	1	0	0	0	0	1	0	0	0	14736	478	17	4	1001	4	SLC39A6	18	33702072	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1992203	33702072	44375176	548	129398											
CELF4	56853	broad.mit.edu	37	chr18	34852957	34852957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaccgggccagaccgcGtgttggcacctgccagctca	11	18	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34852957	T	T	34852957	1	4	150	0	1	0	0	0	0	0	0	0	3248	1160	40	3		3	CELF4	18	34852957	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1150885	34852957	43224291	549	129399											
CDH20	28316	broad.mit.edu	37	chr18	59212266	59212266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccctccctcagctgatcCagacagtgagtgcggtggac	12	13	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59212266	A	A	59212266	3	1	150	1	0	0	0	0	1	0	0	0	3136	595	21	2	1571	2	CDH20	18	59212266	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	24359309	59212266	18864982	550	129400											
SERPINB12	89777	broad.mit.edu	37	chr18	61228315	61228315	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccttttattccaatggaaCaggaatacttagatggtgtg	9	7	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61228315	G	G	61228315	1	3	150	0	1	0	0	0	0	0	0	0	14212	493	17	4		4	SERPINB12	18	61228315	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	2016049	61228315	16848933	551	129401											
SERPINB2	5055	broad.mit.edu	37	chr18	61569034	61569035	+	Missense_Mutation	DNP	TG	AA	AA													ggataccaggatggtcctggTgaatgctgtctacttcaaag							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	61569035	AA	AA	61569034	3	1	150	1	0	0	0	0	1	0	0	0	14214	1696	59	5	614	5	SERPINB2	18	61569034	Missense_Mutation	DNP	TG	TCGA-50-5045-01A-01D-1625-08	340719	61569034	16508214	552	129402											
NETO1	81832	broad.mit.edu	37	chr18	70451114	70451114	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcactcatttgaattctgcaTctcatagtccaagaatcgta	6	10	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70451114	A	A	70451114	3	1	150	1	0	0	0	0	1	0	0	0	10434	1435	50	5	950	5	NETO1	18	70451114	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	8882080	70451114	7626134	553	129403											
POLR2E	5434	broad.mit.edu	37	chr19	1089824	1089824	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggggagggacagaagcccCcttctccgagtggtcagctc	14	13	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1089824	T	T	1089824	1	4	150	0	1	0	0	0	0	0	0	0	12313	638	22	4		4	POLR2E	19	1089824	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08		1089824	58039159	554	129404											
SHD	56961	broad.mit.edu	37	chr19	4290668	4290668	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttgagtcctcgggcccaGaatcgtatcccaaagccctc	8	15	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4290668	T	T	4290668	1	4	150	0	1	0	0	0	0	0	0	0	14388	957	33	3		3	SHD	19	4290668	3'UTR	SNP	G	TCGA-50-5045-01A-01D-1625-08	3200844	4290668	54838315	555	129405											
EVI5L	115704	broad.mit.edu	37	chr19	7916660	7916660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggggatgtcccaggtgGgccgggagggccagggccgg	23	9	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7916660	T	T	7916660	1	4	150	0	1	0	0	0	0	0	0	0	5332	1247	43	2		2	EVI5L	19	7916660	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3625992	7916660	51212323	556	129406											
MUC16	94025	broad.mit.edu	37	chr19	8982132	8982132	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctggggggtggggcagGgagatggggctgatagctgc	25	5	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8982132	A	A	8982132	1	1	150	0	1	0	0	0	0	0	0	0	10067	1247	43	4		4	MUC16	19	8982132	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1065472	8982132	50146851	557	129407											
MUC16	94025	broad.mit.edu	37	chr19	9077714	9077715	+	Missense_Mutation	DNP	TG	CT	CT													gctgtggactgaagggtgacTggttccactgtggtctccat							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	9077715	CT	CT	9077714	3	2	150	1	0	0	0	0	1	0	0	0	10067	1567	55	5	34119	5	MUC16	19	9077714	Missense_Mutation	DNP	TG	TCGA-50-5045-01A-01D-1625-08	95582	9077714	50051269	558	129408											
ZNF317	57693	broad.mit.edu	37	chr19	9271087	9271087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacgagtgcagcgactgcGggaaagccttcaacgaccct	11	13	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9271087	T	T	9271087	3	4	150	1	0	0	0	0	1	0	0	0	17961	1116	39	1	788	1	ZNF317	19	9271087	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	193373	9271087	49857896	559	129409											
ZNF317	57693	broad.mit.edu	37	chr19	9271256	9271256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaagtgtgatcagtgcgGgaaggcttacggccggagct	15	8	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9271256	T	T	9271256	3	4	150	1	0	0	0	0	1	0	0	0	17961	1232	43	2	957	2	ZNF317	19	9271256	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	169	9271256	49857727	560	129410											
RDH8	50700	broad.mit.edu	37	chr19	10124143	10124143	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtcaggtgctgcccggCggaggtcacgagtccaggga	17	11	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10124143	A	A	10124143	1	1	150	0	1	0	0	0	0	0	0	0	13304	783	27	3		3	RDH8	19	10124143	5'UTR	SNP	C	TCGA-50-5045-01A-01D-1625-08	852887	10124143	49004840	561	129411											
ZNF490	57474	broad.mit.edu	37	chr19	12692409	12692409	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgaagacttccccacaCacactgcagtcacatggttt	7	13	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12692409	A	A	12692409	2	1	150	1	0	0	0	0	0	0	0	1	18068	465	17	3		3	ZNF490	19	12692409	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	2568266	12692409	46436574	562	129412											
MAST1	22983	broad.mit.edu	37	chr19	12979561	12979561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccgggcgcggcaccagCagatgtcaggggatgtggca	18	11	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12979561	A	A	12979561	3	1	150	1	0	0	0	0	1	0	0	0	9416	711	25	3	2753	3	MAST1	19	12979561	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	287152	12979561	46149422	563	129413											
AP1M1	8907	broad.mit.edu	37	chr19	16345161	16345161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccagggtggagccatcgGgtcgggtcccgaaagcaggg	17	13	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16345161	T	T	16345161	1	4	150	0	1	0	0	0	0	0	0	0	736	1247	43	2		2	AP1M1	19	16345161	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	3365600	16345161	42783822	564	129414											
CHERP	10523	broad.mit.edu	37	chr19	16641682	16641682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcagctcccgggcctgCttgcgctggctgtgagggag	17	13	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16641682	A	A	16641682	3	1	150	1	0	0	0	0	1	0	0	0	3367	796	28	3	2114	3	CHERP	19	16641682	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	296521	16641682	42487301	565	129415											
ZNF98	148198	broad.mit.edu	37	chr19	22605024	22605024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcttccaaggggtcctggCatcttagctgtggattccca	12	11	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22605024	A	A	22605024	3	1	150	1	0	0	0	0	1	0	0	0	18332	710	25	3	1731	3	ZNF98	19	22605024	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5963342	22605024	36523959	566	129416											
SLC7A9	11136	broad.mit.edu	37	chr19	33334900	33334900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgctgaccagagtgcagaCcatctgtccagggccactga	11	14	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33334900	A	A	33334900	1	1	150	0	1	0	0	0	0	0	0	0	14819	522	18	3		3	SLC7A9	19	33334900	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	10729876	33334900	25794083	567	129417											
KIAA0355	9710	broad.mit.edu	37	chr19	34811000	34811000	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtagaggaagctgtgcgGtcctggcggggggctgctga	20	7	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34811000	T	T	34811000	2	4	150	1	0	0	0	0	0	0	0	1	8240	1248	44	3		3	KIAA0355	19	34811000	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	1476100	34811000	24317983	568	129418											
ARHGAP33	115703	broad.mit.edu	37	chr19	36277799	36277799	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccacccgctgtcctagaActgctgggggctgggggagc	17	12	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36277799	G	G	36277799	2	3	150	1	0	0	0	0	0	0	0	1	884	57	2	5		5	ARHGAP33	19	36277799	Silent	SNP	A	TCGA-50-5045-01A-01D-1625-08	1466799	36277799	22851184	569	129419											
CYP2S1	29785	broad.mit.edu	37	chr19	41704914	41704914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctctctgcatgtctctGtgagtatgagtgtctctgtg	10	9	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41704914	T	T	41704914	1	4	150	0	1	0	0	0	0	0	0	0	4207	1392	48	3		3	CYP2S1	19	41704914	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5427115	41704914	17424069	570	129420											
PSG5	5673	broad.mit.edu	37	chr19	43690437	43690437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatcctctccaggagacCcaatccagtcactcttcttc	4	19	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43690437	A	A	43690437	1	1	150	0	1	0	0	0	0	0	0	0	12764	638	22	2		2	PSG5	19	43690437	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1985523	43690437	15438546	571	129421											
CGB	1082	broad.mit.edu	37	chr19	49551670	49551670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccgggtctgagaccgcaGccccgagtcctggccttccc	11	19	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49551670	T	T	49551670	1	4	150	0	1	0	0	0	0	0	0	0	3326	986	34	3		3	CGB	19	49551670	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5861233	49551670	9577313	572	129422											
RPS11	6205	broad.mit.edu	37	chr19	49999751	49999752	+	Intron	INS	-	T	T													cggactcggggttggatgccINSagggtgcggggtccgccttg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49999752	T	T	49999751	6	5	150	0	1	1	1	0	0	0	0	0	13732	609	21	0		0	RPS11	19	49999751	Intron	INS	-	TCGA-50-5045-01A-01D-1625-08	448081	49999751	9129232	573	129423											
SIGLEC8	27181	broad.mit.edu	37	chr19	51961365	51961365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagttggaatcggccctGggtctctgcctgcacttctc	12	12	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51961365	T	T	51961365	3	4	150	1	0	0	0	0	1	0	0	0	14427	1357	47	2	1250	2	SIGLEC8	19	51961365	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1961614	51961365	7167618	574	129424											
ZNF813	126017	broad.mit.edu	37	chr19	53983091	53983091	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagcagatcagactgatgGaccagaacctgaagtgtctg	12	8	2	6			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53983091	T	T	53983091	1	4	150	0	1	0	0	0	0	0	0	0	18304	1189	41	3		3	ZNF813	19	53983091	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	2021726	53983091	5145892	575	129425											
KIR2DL1	3802	broad.mit.edu	37	chr19	55286984	55286984	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagcttcctgctgaggatgGagagaagcatggacagatgc	16	7	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55286984	A	A	55286984	1	1	150	0	1	0	0	0	0	0	0	0	8387	1189	41	4		4	KIR2DL1	19	55286984	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1303893	55286984	3841999	576	129426											
KIR3DL1	3811	broad.mit.edu	37	chr19	55331428	55331428	+	Missense_Mutation	SNP	T	A	A													ttactcacaccccctatcagTtgtcagctcccagtgatccc							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55331428	A	A	55331428	3	1	150	1	0	0	0	0	1	0	0	0	8391	1722	60	5	630	5	KIR3DL1	19	55331428	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	44444	55331428	3797555	577	129427	561	2									
KIR3DL1	3811	broad.mit.edu	37	chr19	55331438	55331438	+	Missense_Mutation	SNP	C	A	A													cccctatcagttgtcagctcCcagtgatcccctggacatcg							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55331438	A	A	55331438	3	1	150	1	0	0	0	0	1	0	0	0	8391	623	22	2	640	2	KIR3DL1	19	55331438	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	10	55331438	3797545	578	129428	561	2									
NLRP9	338321	broad.mit.edu	37	chr19	56235292	56235292	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaacaagaaaatcaaacTgcaaagcccaccttggaaag	8	9	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56235292	C	C	56235292	1	2	150	0	1	0	0	0	0	0	0	0	10579	1595	55	5		5	NLRP9	19	56235292	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	903854	56235292	2893691	579	129429											
ZNF419	79744	broad.mit.edu	37	chr19	58002838	58002838	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactctgtccatcttagcaGggctatgtgacctttgagga	10	10	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58002838	T	T	58002838	5	4	150	1	0	0	0	0	0	0	1	0	18023	1014	35	2	85	2	ZNF419	19	58002838	Splice_Site	SNP	G	TCGA-50-5045-01A-01D-1625-08	1767546	58002838	1126145	580	129430											
STK35	140901	broad.mit.edu	37	chr20	2097421	2097421	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcccggaggccagacccAgccaccaacaaaagtttcat	8	15	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2097421	T	T	2097421	2	4	150	1	0	0	0	0	0	0	0	1	15419	175	7	5		5	STK35	20	2097421	Silent	SNP	A	TCGA-50-5045-01A-01D-1625-08		2097421	60928099	581	129431											
TGM6	343641	broad.mit.edu	37	chr20	2411389	2411389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtgggttggacataagGggatgggtgcaatagtggca	19	3	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2411389	T	T	2411389	1	4	150	0	1	0	0	0	0	0	0	0	15957	1247	43	2		2	TGM6	20	2411389	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	313968	2411389	60614131	582	129432											
BMP2	650	broad.mit.edu	37	chr20	6758772	6758773	+	Intron	DNP	GG	TT	TT													ctggttacctacttttacatGggttacatcaaatcccacga							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6758773	TT	TT	6758772	1	4	150	0	1	0	0	0	0	0	0	0	1465	1363	47	2		2	BMP2	20	6758772	Intron	DNP	GG	TCGA-50-5045-01A-01D-1625-08	4347383	6758772	56266748	583	129433											
PLCB1	23236	broad.mit.edu	37	chr20	8717677	8717677	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttattgattttctagatTatttcaggtcagtttctttc	6	5	4	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8717677	A	A	8717677	2	1	150	1	0	0	0	0	0	0	0	1	12122	1742	61	5		5	PLCB1	20	8717677	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	1958905	8717677	54307843	584	129434											
C20orf103	24141	broad.mit.edu	37	chr20	9510422	9510422	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaaaatgactgccaaccaGgtgcagatccctcgggacag	10	13	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9510422	C	C	9510422	3	2	150	1	0	0	0	0	1	0	0	0	2097	991	35	4	820	4	C20orf103	20	9510422	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	792745	9510422	53515098	585	129435											
MACROD2	140733	broad.mit.edu	37	chr20	15412194	15412194	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atattttgctgtgatttagaGactaaaaatgctcgtcaaat	7	5	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15412194	T	T	15412194	1	4	150	0	1	0	0	0	0	0	0	0	9234	957	33	3		3	MACROD2	20	15412194	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5901772	15412194	47613326	586	129436											
MACROD2	140733	broad.mit.edu	37	chr20	15967720	15967720	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attctatttagaactttcatCaaaccaagaagatgccgtga	6	8	3	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15967720	T	T	15967720	3	4	150	1	0	0	0	0	1	0	0	0	9234	838	29	4	1128	4	MACROD2	20	15967720	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	555526	15967720	47057800	587	129437											
CSRP2BP	57325	broad.mit.edu	37	chr20	18143613	18143613	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgcaagcacttgctgtaaAgcccttgggggcaggagtgg	15	8	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18143613	T	T	18143613	1	4	150	0	1	0	0	0	0	0	0	0	4002	87	3	5		5	CSRP2BP	20	18143613	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	2175893	18143613	44881907	588	129438											
C20orf26	26074	broad.mit.edu	37	chr20	20055038	20055038	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcggtgagtggatatggcCgtgcagtggtgaacatgaaa	15	6	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20055038	T	T	20055038	1	4	150	0	1	0	0	0	0	0	0	0	2128	667	23	4		4	C20orf26	20	20055038	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1911425	20055038	42970482	589	129439											
CST8	10047	broad.mit.edu	37	chr20	23472256	23472256	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgcccacagctccagcCctgagacgacgaggaggaga	12	14	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23472256	A	A	23472256	1	1	150	0	1	0	0	0	0	0	0	0	4012	638	22	2		2	CST8	20	23472256	5'UTR	SNP	C	TCGA-50-5045-01A-01D-1625-08	3417218	23472256	39553264	590	129440											
SLC12A5	57468	broad.mit.edu	37	chr20	44675108	44675108	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccacacttccactgagcCacttgctcacctccacgcca	4	21	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44675108	T	T	44675108	1	4	150	0	1	0	0	0	0	0	0	0	14499	609	21	4		4	SLC12A5	20	44675108	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	21202852	44675108	18350412	591	129441											
MOCS3	27304	broad.mit.edu	37	chr20	49575103	49575103	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagcggaattacgtaatgtGgcgcggaaaaggacgggtcg	17	6	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49575103	C	C	49575103	1	2	150	0	1	0	0	0	0	0	0	0	9786	1363	47	4		4	MOCS3	20	49575103	5'Flank	SNP	G	TCGA-50-5045-01A-01D-1625-08	4899995	49575103	13450417	592	129442											
ADRM1	11047	broad.mit.edu	37	chr20	60878866	60878866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgagccgcagcagcaggAcaggcgacttctcgggccct	13	16	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60878866	G	G	60878866	1	3	150	0	1	0	0	0	0	0	0	0	345	290	10	5		5	ADRM1	20	60878866	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08	11303763	60878866	2146654	593	129443											
COL9A3	1299	broad.mit.edu	37	chr20	61451246	61451246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcatgtgcttcccatGtggcccctcgagctcgccct	13	15	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61451246	T	T	61451246	1	4	150	0	1	0	0	0	0	0	0	0	3741	1392	48	3		3	COL9A3	20	61451246	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	572380	61451246	1574274	594	129444											
KCNQ2	3785	broad.mit.edu	37	chr20	62076626	62076626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccgggcaaacttgagcCgccccctccagccacggtac	10	17	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62076626	A	A	62076626	3	1	150	1	0	0	0	0	1	0	0	0	8153	652	23	1	2263	1	KCNQ2	20	62076626	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	625380	62076626	948894	595	129445											
MYT1	4661	broad.mit.edu	37	chr20	62850201	62850201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccaaacctttcccaaaggCctcttcccccaggcacagcc	6	19	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62850201	A	A	62850201	1	1	150	0	1	0	0	0	0	0	0	0	10200	754	26	3		3	MYT1	20	62850201	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	773575	62850201	175319	596	129446											
TPTE	7179	broad.mit.edu	37	chr21	10942857	10942857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagtatagatatcaaccCttgtcaatgggtcccaaaac	6	10	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10942857	A	A	10942857	1	1	150	0	1	0	0	0	0	0	0	0	16554	696	24	2		2	TPTE	21	10942857	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08		10942857	37187038	597	129447											
TMPRSS15	5651	broad.mit.edu	37	chr21	19647666	19647666	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtagtacctgctcaaaatgGagaatgcagccagccagtca	10	10	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19647666	T	T	19647666	1	4	150	0	1	0	0	0	0	0	0	0	16369	1189	41	3		3	TMPRSS15	21	19647666	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	8704809	19647666	28482229	598	129448											
SH3BGR	6450	broad.mit.edu	37	chr21	40871811	40871811	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagggcagtgaagatgtGggcaacctccctgaagccca	13	10	0	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40871811	T	T	40871811	2	4	150	1	0	0	0	0	0	0	0	1	14353	1335	47	2		2	SH3BGR	21	40871811	Silent	SNP	G	TCGA-50-5045-01A-01D-1625-08	21224145	40871811	7258084	599	129449											
ADARB1	104	broad.mit.edu	37	chr21	46605016	46605016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagattgcacggtaaggggcGggggctccctgtggccacct	16	11	0	1	rs142203909		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46605016	T	T	46605016	1	4	150	0	1	0	0	0	0	0	0	0	282	1131	39	1		1	ADARB1	21	46605016	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5733205	46605016	1524879	600	129450											
PCNT	5116	broad.mit.edu	37	chr21	47801775	47801775	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtgtgtggaatacgctgttCccttgtgataagacgtgtat	13	6	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47801775	G	G	47801775	1	3	150	0	1	0	0	0	0	0	0	0	11684	870	30	4		4	PCNT	21	47801775	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1196759	47801775	328120	601	129451											
GAB4	128954	broad.mit.edu	37	chr22	17446080	17446080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactcacctggtcccagacCagggctctgtgacaggtggc	12	14	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17446080	A	A	17446080	3	1	150	1	0	0	0	0	1	0	0	0	6211	595	21	2	373	2	GAB4	22	17446080	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08		17446080	33858486	602	129452											
GAB4	128954	broad.mit.edu	37	chr22	17472786	17472786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttcctcctgcctgaagCcacagatctgacagatgctc	8	14	1	4			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17472786	A	A	17472786	3	1	150	1	0	0	0	0	1	0	0	0	6211	739	26	3	1305	3	GAB4	22	17472786	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	26706	17472786	33831780	603	129453											
MICAL3	57553	broad.mit.edu	37	chr22	18389289	18389289	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcatctcgtcagtgacccCagggcccaacaggagcaaag	12	13	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18389289	G	G	18389289	1	3	150	0	1	0	0	0	0	0	0	0	9664	609	21	4		4	MICAL3	22	18389289	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	916503	18389289	32915277	604	129454											
TFIP11	24144	broad.mit.edu	37	chr22	26905973	26905973	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtatctcctccactccctgTccatcttccccctcttccct	3	21	3	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26905973	C	C	26905973	1	2	150	0	1	0	0	0	0	0	0	0	15930	1682	58	5		5	TFIP11	22	26905973	Intron	SNP	T	TCGA-50-5045-01A-01D-1625-08	8516684	26905973	24398593	605	129455											
CACNA1I	8911	broad.mit.edu	37	chr22	40015446	40015446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgtccacacattcctgGctgatccatccctggccaac	7	18	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40015446	T	T	40015446	1	4	150	0	1	0	0	0	0	0	0	0	2572	1218	42	3		3	CACNA1I	22	40015446	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	13109473	40015446	11289120	606	129456											
EFCAB6	64800	broad.mit.edu	37	chr22	44178097	44178097	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatttggggaaccattcctTgaatatactctacacggtga	8	8	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44178097	A	A	44178097	2	1	150	1	0	0	0	0	0	0	0	1	4979	1799	63	5		5	EFCAB6	22	44178097	Silent	SNP	T	TCGA-50-5045-01A-01D-1625-08	4162651	44178097	7126469	607	129457											
C22orf9	23313	broad.mit.edu	37	chr22	45598842	45598842	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaacttgacggatgggaGcccccgcccccagctgtgca	13	14	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45598842	A	A	45598842	1	1	150	0	1	0	0	0	0	0	0	0	2173	986	34	4		4	C22orf9	22	45598842	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	1420745	45598842	5705724	608	129458											
FBLN1	2192	broad.mit.edu	37	chr22	45972975	45972975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcaagcgttacatggaCggcatgaccgtgggtgagtg	14	8	2	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45972975	A	A	45972975	3	1	150	1	0	0	0	0	1	0	0	0	5755	535	19	3	2501	3	FBLN1	22	45972975	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	374133	45972975	5331591	609	129459											
FAM9A	171482	broad.mit.edu	37	chrX	8761671	8761671	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacgtgttgtattttataAtgtattatgttaccaaatag	7	4	0	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8761671	G	G	8761671	1	3	150	0	1	0	0	0	0	0	0	0	5716	116	4	5		5	FAM9A	23	8761671	Intron	SNP	A	TCGA-50-5045-01A-01D-1625-08		8761671	146508889	610	129460											
ACE2	59272	broad.mit.edu	37	chrX	15591573	15591573	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcacaggttccaccacCccaactatctctcgcctttg	8	16	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15591573	A	A	15591573	2	1	150	1	0	0	0	0	0	0	0	1	137	610	22	2		2	ACE2	23	15591573	Silent	SNP	C	TCGA-50-5045-01A-01D-1625-08	6829902	15591573	139678987	611	129461											
POLA1	5422	broad.mit.edu	37	chrX	24722502	24722502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtattaaattttgtccctGcagatggtattggctatgtg	10	6	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24722502	T	T	24722502	1	4	150	0	1	0	0	0	0	0	0	0	12282	1334	46	3		3	POLA1	23	24722502	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	9130929	24722502	130548058	612	129462											
MAGEB6	158809	broad.mit.edu	37	chrX	26212382	26212382	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagtccaagcacttcccAtgatgtctccgttcctcagg	8	13	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26212382	C	C	26212382	3	2	150	1	0	0	0	0	1	0	0	0	9271	217	8	5	421	5	MAGEB6	23	26212382	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	1489880	26212382	129058178	613	129463											
FAM47B	170062	broad.mit.edu	37	chrX	34962203	34962203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaagcctcccaagactcgtCgggtgtccagtctctgcccg	11	15	1	2	rs112769272		TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34962203	T	T	34962203	3	4	150	1	0	0	0	0	1	0	0	0	5621	875	31	4	1257	4	FAM47B	23	34962203	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	8749821	34962203	120308357	614	129464											
CACNA1F	778	broad.mit.edu	37	chrX	49070669	49070669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcaatagtgaagaggcCagtgaagaccatgttgagga	12	7	1	5			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49070669	A	A	49070669	3	1	150	1	0	0	0	0	1	0	0	0	2569	594	21	2	2318	2	CACNA1F	23	49070669	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	14108466	49070669	106199891	615	129465											
MAGED2	10916	broad.mit.edu	37	chrX	54840890	54840890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcattgtgatgagggcGtcaaacttgtggcttcccta	14	8	2	2	rs150465263	by1000genomes	TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54840890	T	T	54840890	1	4	150	0	1	0	0	0	0	0	0	0	9276	1160	40	3		3	MAGED2	23	54840890	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	5770221	54840890	100429670	616	129466											
HDX	139324	broad.mit.edu	37	chrX	83723895	83723895	+	Frame_Shift_Del	DEL	C	-	-													gcttctgtggggcatttcctCccagaattctctgggggtaa							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83723895	-	-	83723895	7	5	150	1	0	1	0	1	0	0	0	0	7093	855	30	0	1268	0	HDX	23	83723895	Frame_Shift_Del	DEL	C	TCGA-50-5045-01A-01D-1625-08	28883005	83723895	71546665	617	129467											
ZNF711	7552	broad.mit.edu	37	chrX	84520224	84520224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggagaagatggtttacatGgcagttaaagattcttctca	11	6	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84520224	T	T	84520224	3	4	150	1	0	0	0	0	1	0	0	0	18244	1348	47	2	893	2	ZNF711	23	84520224	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	796329	84520224	70750336	618	129468											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177210	89177210	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataacgcagatacaggcagAgttcttgccttaccagagca	9	10	1	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177210	T	T	89177210	3	4	150	1	0	0	0	0	1	0	0	0	15950	301	11	5	128	5	TGIF2LX	23	89177210	Missense_Mutation	SNP	A	TCGA-50-5045-01A-01D-1625-08	4656986	89177210	66093350	619	129469											
PABPC5	140886	broad.mit.edu	37	chrX	90690776	90690776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgggtatgttaacttccGctttcccgcggatgcagagt	11	10	0	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90690776	T	T	90690776	3	4	150	1	0	0	0	0	1	0	0	0	11461	1087	38	3	202	3	PABPC5	23	90690776	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1513566	90690776	64579784	620	129470											
SRPX2	27286	broad.mit.edu	37	chrX	99924327	99924327	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaggtggggcgcatccGggagcaacagctgtcagcca	16	11	2	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99924327	A	A	99924327	3	1	150	1	0	0	0	0	1	0	0	0	15283	1116	39	4	1212	4	SRPX2	23	99924327	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	9233551	99924327	55346233	621	129471											
NXF2B	728343	broad.mit.edu	37	chrX	101572264	101572264	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctaattgtagccctggcgtCagtgagtggagcatgtatag	13	8	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101572264	A	A	101572264	1	1	150	0	1	0	0	0	0	0	0	0	10879	841	29	3		3	NXF2B	23	101572264	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	1647937	101572264	53698296	622	129472											
COL4A5	1287	broad.mit.edu	37	chrX	107898751	107898751	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctactccaaccagtatcacaGagcagcttcttatttggcag	7	12	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107898751	A	A	107898751	1	1	150	0	1	0	0	0	0	0	0	0	3726	957	33	4		4	COL4A5	23	107898751	Intron	SNP	G	TCGA-50-5045-01A-01D-1625-08	6326487	107898751	47371809	623	129473											
TRPC5	7224	broad.mit.edu	37	chrX	111195540	111195540	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccttctccacagcattgaGgaaggccttctcctctgcag	8	16	3	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111195540	C	C	111195540	3	2	150	1	0	0	0	0	1	0	0	0	16707	1000	35	4	2852	4	TRPC5	23	111195540	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	3296789	111195540	44075020	624	129474											
FAM70A	55026	broad.mit.edu	37	chrX	119428017	119428017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaaactgggccgggcgCggtggctcacgcctgtaatc	14	11	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119428017	A	A	119428017	1	1	150	0	1	0	0	0	0	0	0	0	5656	783	27	3		3	FAM70A	23	119428017	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	8232477	119428017	35842543	625	129475											
ODZ1	10178	broad.mit.edu	37	chrX	123695766	123695766	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcatctaaccatctgggcCccattcagatgaggtgttga	10	10	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123695766	G	G	123695766	1	3	150	0	1	0	0	0	0	0	0	0	10929	638	22	4		4	ODZ1	23	123695766	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	4267749	123695766	31574794	626	129476											
ODZ1	10178	broad.mit.edu	37	chrX	123805544	123805544	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcactgtaccttttttctctGatttatcagaaacttttcct	3	10	3	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123805544	T	T	123805544	4	4	150	1	0	0	0	0	0	1	0	0	10929	1294	45	3	7149	3	ODZ1	23	123805544	Nonsense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	109778	123805544	31465016	627	129477											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298594	125298594	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaagagcttcatctccggCcagttgtagcagtgggtgta	12	9	2	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125298594	T	T	125298594	4	4	150	1	0	0	0	0	0	1	0	0	4298	740	26	4	81	4	DCAF12L2	23	125298594	Nonsense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	1493050	125298594	29971966	628	129478											
GPR112	139378	broad.mit.edu	37	chrX	135455096	135455096	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagcgtactggtcacaagaTggagttttctgggcagatag	14	6	2	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135455096	A	A	135455096	3	1	150	1	0	0	0	0	1	0	0	0	6694	1464	51	5	7695	5	GPR112	23	135455096	Missense_Mutation	SNP	T	TCGA-50-5045-01A-01D-1625-08	10156502	135455096	19815464	629	129479											
MAGEC2	51438	broad.mit.edu	37	chrX	141291699	141291699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggatgctgtgcatctacCcagtcttctaactcaactga	9	11	4	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141291699	A	A	141291699	3	1	150	1	0	0	0	0	1	0	0	0	9273	624	22	2	1050	2	MAGEC2	23	141291699	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5836603	141291699	13978861	630	129480											
SLITRK4	139065	broad.mit.edu	37	chrX	142718256	142718256	+	Frame_Shift_Del	DEL	G	-	-													ttctccagccaagcttttaaGggcaataaatcacagctaca							TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142718256	-	-	142718256	7	5	150	1	0	1	0	1	0	0	0	0	14859	987	35	0	1848	0	SLITRK4	23	142718256	Frame_Shift_Del	DEL	G	TCGA-50-5045-01A-01D-1625-08	1426557	142718256	12552304	631	129481											
AFF2	2334	broad.mit.edu	37	chrX	148072760	148072760	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaattctttggtgatctggaCacgctgatggggcctctgac	13	9	3	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148072760	G	G	148072760	3	3	150	1	0	0	0	0	1	0	0	0	357	477	17	4	3971	4	AFF2	23	148072760	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	5354504	148072760	7197800	632	129482											
CNGA2	1260	broad.mit.edu	37	chrX	150907049	150907049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaatggcaaagatgacCacaggacaagcagcaggtga	13	9	0	3			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150907049	A	A	150907049	3	1	150	1	0	0	0	0	1	0	0	0	3629	594	21	2	96	2	CNGA2	23	150907049	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	2834289	150907049	4363511	633	129483											
GABRQ	55879	broad.mit.edu	37	chrX	151821409	151821409	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaagcccatgcttcacCatggcgagaagggtgtgcaa	15	9	1	1			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151821409	T	T	151821409	3	4	150	1	0	0	0	0	1	0	0	0	6235	594	21	4	1598	4	GABRQ	23	151821409	Missense_Mutation	SNP	C	TCGA-50-5045-01A-01D-1625-08	914360	151821409	3449151	634	129484											
CSAG1	158511	broad.mit.edu	37	chrX	151908824	151908824	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagctcggggagaccaGgtggactggagtagactgta	19	6	0	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151908824	C	C	151908824	3	2	150	1	0	0	0	0	1	0	0	0	3958	991	35	4	69	4	CSAG1	23	151908824	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	87415	151908824	3361736	635	129485											
FAM58A	92002	broad.mit.edu	37	chrX	152861341	152861341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccctgcctggttcaaggCcatccaggtacttccttcca	9	15	1	0			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152861341	A	A	152861341	1	1	150	0	1	0	0	0	0	0	0	0	5641	754	26	3		3	FAM58A	23	152861341	Intron	SNP	C	TCGA-50-5045-01A-01D-1625-08	952517	152861341	2409219	636	129486											
CTAG2	30848	broad.mit.edu	37	chrX	153880825	153880825	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaccgcccctggtcggGggagaggtgcggcatcccgg	17	13	1	2			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153880825	A	A	153880825	3	1	150	1	0	0	0	0	1	0	0	0	4025	1232	43	4	425	4	CTAG2	23	153880825	Missense_Mutation	SNP	G	TCGA-50-5045-01A-01D-1625-08	1019484	153880825	1389735	637	129487											
CDK11B	984	broad.mit.edu	37	chr1	1573207	1573207	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatcgggaagccctccttctCcttctccatcttcagccgct	7	17	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1573207	A	A	1573207	4	1	151	1	0	0	0	0	0	1	0	0	3157	864	30	3	999	3	CDK11B	1	1573207	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08		1573207	247677414	1	129488											
CCDC27	148870	broad.mit.edu	37	chr1	3669132	3669132	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgtcctcattcaggtcCacattcaggcaacaaagctc	8	14	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3669132	A	A	3669132	2	1	151	1	0	0	0	0	0	0	0	1	2828	581	21	2		2	CCDC27	1	3669132	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2095925	3669132	245581489	2	129489											
DNAJC11	55735	broad.mit.edu	37	chr1	6705159	6705159	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttgtgctgatagctgaTcagtgcaaaggagtgaggga	15	4	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6705159	C	C	6705159	3	2	151	1	0	0	0	0	1	0	0	0	4670	1435	50	5	789	5	DNAJC11	1	6705159	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	3036027	6705159	242545462	3	129490											
CASZ1	54897	broad.mit.edu	37	chr1	10702959	10702959	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgggggtgctggagcagctCcggtccatggtggatgactc	17	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10702959	A	A	10702959	2	1	151	1	0	0	0	0	0	0	0	1	2711	842	30	3		3	CASZ1	1	10702959	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	3997800	10702959	238547662	4	129491											
PRAMEF2	65122	broad.mit.edu	37	chr1	12919417	12919417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaatccaaagggaaaaGggattgagaaaagacaaaga	11	5	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12919417	T	T	12919417	1	4	151	0	1	0	0	0	0	0	0	0	12537	1015	35	2		2	PRAMEF2	1	12919417	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2216458	12919417	236331204	5	129492											
PRAMEF4	400735	broad.mit.edu	37	chr1	12942103	12942103	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaagttctacgaacacagtCaagggctgccgtcctctcat	8	13	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12942103	A	A	12942103	3	1	151	1	0	0	0	0	1	0	0	0	12541	825	29	3	997	3	PRAMEF4	1	12942103	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	22686	12942103	236308518	6	129493											
CLCNKA	1187	broad.mit.edu	37	chr1	16356607	16356607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgggtgggcaatgtcGtggggctgggctggacctgg	20	9	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16356607	T	T	16356607	1	4	151	0	1	0	0	0	0	0	0	0	3500	1160	40	3		3	CLCNKA	1	16356607	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3414504	16356607	232894014	7	129494											
PADI6	353238	broad.mit.edu	37	chr1	17708498	17708498	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagatgactctgaatgtccAaggccccagctgtatcttaa	8	12	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17708498	T	T	17708498	3	4	151	1	0	0	0	0	1	0	0	0	11475	130	5	5	612	5	PADI6	1	17708498	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1351891	17708498	231542123	8	129495											
TAS1R2	80834	broad.mit.edu	37	chr1	19180801	19180801	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcatagaccgcagagtacAcgctgtagacgacacgctcc	10	14	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19180801	T	T	19180801	3	4	151	1	0	0	0	0	1	0	0	0	15682	159	6	5	1372	5	TAS1R2	1	19180801	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1472303	19180801	230069820	9	129496											
CAPZB	832	broad.mit.edu	37	chr1	19683367	19683367	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatattacctttttttttttTaaattggagacaaagtctcg	5	5	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19683367	A	A	19683367	1	1	151	0	1	0	0	0	0	0	0	0	2669	1769	61	5		5	CAPZB	1	19683367	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	502566	19683367	229567254	10	129497											
TMCO4	255104	broad.mit.edu	37	chr1	20009760	20009760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgggaccctgggtttgccCaacctggtggggggtctcgc	16	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20009760	A	A	20009760	3	1	151	1	0	0	0	0	1	0	0	0	16121	594	21	2	230	2	TMCO4	1	20009760	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	326393	20009760	229240861	11	129498											
HSPG2	3339	broad.mit.edu	37	chr1	22176466	22176466	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcgtgagccactgcgccCggtcaagcctatgctcttgt	12	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22176466	T	T	22176466	1	4	151	0	1	0	0	0	0	0	0	0	7500	667	23	4		4	HSPG2	1	22176466	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2166706	22176466	227074155	12	129499											
EPHA8	2046	broad.mit.edu	37	chr1	22924752	22924752	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgggcttggggagggaggtCcagtctgggtgctgggagat	21	5	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22924752	A	A	22924752	1	1	151	0	1	0	0	0	0	0	0	0	5215	870	30	3		3	EPHA8	1	22924752	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	748286	22924752	226325869	13	129500											
C1orf201	90529	broad.mit.edu	37	chr1	24727705	24727705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatgcctgtaaggatggcCctgtggatataacccaggac	13	9	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24727705	A	A	24727705	1	1	151	0	1	0	0	0	0	0	0	0	2047	638	22	2		2	C1orf201	1	24727705	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1802953	24727705	224522916	14	129501											
SRRM1	10250	broad.mit.edu	37	chr1	24977944	24977944	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaagacgatcttcccctgTcaggagagagagaaagcgca	12	9	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24977944	A	A	24977944	3	1	151	1	0	0	0	0	1	0	0	0	15286	1667	58	5	588	5	SRRM1	1	24977944	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	250239	24977944	224272677	15	129502											
TMEM57	55219	broad.mit.edu	37	chr1	25824847	25824847	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcataacatacagtgccGccaccagccccctgagccct	7	19	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25824847	A	A	25824847	3	1	151	1	0	0	0	0	1	0	0	0	16307	1087	38	4	1927	4	TMEM57	1	25824847	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	846903	25824847	223425774	16	129503											
RPS6KA1	6195	broad.mit.edu	37	chr1	26899666	26899666	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtgccccatcaggggcCtgctcccctgcagccctccc	9	21	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26899666	G	G	26899666	1	3	151	0	1	0	0	0	0	0	0	0	13761	696	24	4		4	RPS6KA1	1	26899666	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1074819	26899666	222350955	17	129504											
FCN3	8547	broad.mit.edu	37	chr1	27696992	27696992	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcggaaactaaggcccacaGaggagacaggattgccctgg	14	10	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27696992	A	A	27696992	1	1	151	0	1	0	0	0	0	0	0	0	5850	957	33	4		4	FCN3	1	27696992	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	797326	27696992	221553629	18	129505											
LCK	3932	broad.mit.edu	37	chr1	32745436	32745436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgctgatctgtgtttggcCtgcagattgcagaaggcatg	13	9	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32745436	A	A	32745436	1	1	151	0	1	0	0	0	0	0	0	0	8748	696	24	2		2	LCK	1	32745436	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	5048444	32745436	216505185	19	129506											
FNDC5	252995	broad.mit.edu	37	chr1	33333801	33333801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcctgcctttgttcttGgaggccatcttctcagcctc	10	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33333801	T	T	33333801	2	4	151	1	0	0	0	0	0	0	0	1	6030	1335	47	2		2	FNDC5	1	33333801	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	588365	33333801	215916820	20	129507											
CSMD2	114784	broad.mit.edu	37	chr1	34011845	34011845	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccagaaccacacaaatccCattatttttcagggaagaaa	6	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34011845	T	T	34011845	1	4	151	0	1	0	0	0	0	0	0	0	3979	609	21	4		4	CSMD2	1	34011845	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	678044	34011845	215238776	21	129508											
C1orf94	84970	broad.mit.edu	37	chr1	34663443	34663443	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccctgctcagaagaggcAgctcccagtgtttgccaaga	11	13	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34663443	C	C	34663443	3	2	151	1	0	0	0	0	1	0	0	0	2093	188	7	5	944	5	C1orf94	1	34663443	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	651598	34663443	214587178	22	129509											
TRAPPC3	27095	broad.mit.edu	37	chr1	36603508	36603508	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttattttccaaaatgagGgagaattcatcaccagctgg	11	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36603508	A	A	36603508	2	1	151	1	0	0	0	0	0	0	0	1	16584	1219	43	4		4	TRAPPC3	1	36603508	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1940065	36603508	212647113	23	129510											
OSCP1	127700	broad.mit.edu	37	chr1	36884607	36884607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtacctgggtggcttgtatGttgataacttcataggataa	11	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36884607	T	T	36884607	3	4	151	1	0	0	0	0	1	0	0	0	11380	1368	48	3	139	3	OSCP1	1	36884607	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	281099	36884607	212366014	24	129511											
OSCP1	127700	broad.mit.edu	37	chr1	36909673	36909673	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaacaccagttcatgaAgcaagaacattattttcaag	6	7	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36909673	T	T	36909673	1	4	151	0	1	0	0	0	0	0	0	0	11380	87	3	5		5	OSCP1	1	36909673	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	25066	36909673	212340948	25	129512											
MACF1	23499	broad.mit.edu	37	chr1	39800883	39800883	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaatcctcataatcttaaaGgtaaatccttgggccaagtg	7	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39800883	C	C	39800883	3	2	151	1	0	0	0	0	1	0	0	0	9232	1000	35	4	8714	4	MACF1	1	39800883	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2891210	39800883	209449738	26	129513											
MACF1	23499	broad.mit.edu	37	chr1	39802771	39802771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaaaattgcttctatttGtctaacaaaaacccctgcct	4	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39802771	T	T	39802771	1	4	151	0	1	0	0	0	0	0	0	0	9232	1392	48	3		3	MACF1	1	39802771	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1888	39802771	209447850	27	129514											
MACF1	23499	broad.mit.edu	37	chr1	39845830	39845830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtagagtctataataactGcccagttttccaatcatttc	5	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39845830	T	T	39845830	1	4	151	0	1	0	0	0	0	0	0	0	9232	1334	46	3		3	MACF1	1	39845830	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	43059	39845830	209404791	28	129515											
MACF1	23499	broad.mit.edu	37	chr1	39853090	39853090	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gattgtggctgaaggggaatCtctacttctttctgtacctc	10	9	3	1	rs151008241		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39853090	G	G	39853090	3	3	151	1	0	0	0	0	1	0	0	0	9232	913	32	4	14751	4	MACF1	1	39853090	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7260	39853090	209397531	29	129516											
HIVEP3	59269	broad.mit.edu	37	chr1	42046123	42046123	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcctcctcctccttcactCttttttgctgctgggtttcc	6	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42046123	A	A	42046123	3	1	151	1	0	0	0	0	1	0	0	0	7255	913	32	3	2898	3	HIVEP3	1	42046123	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2193033	42046123	207204498	30	129517											
KIF2C	11004	broad.mit.edu	37	chr1	45205739	45205739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgactgaaattactgcccGtccccggacacacagatggg	11	13	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45205739	T	T	45205739	1	4	151	0	1	0	0	0	0	0	0	0	8369	1160	40	3		3	KIF2C	1	45205739	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3159616	45205739	204044882	31	129518											
STIL	6491	broad.mit.edu	37	chr1	47717476	47717476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatatttcagagctatagCatttgcctccatgctcaaat	5	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47717476	A	A	47717476	3	1	151	1	0	0	0	0	1	0	0	0	15400	710	25	3	671	3	STIL	1	47717476	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2511737	47717476	201533145	32	129519											
FAM159A	348378	broad.mit.edu	37	chr1	53122865	53122865	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accctgccatactgttctgcTtggcctattgtgggccaaag	10	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53122865	A	A	53122865	1	1	151	0	1	0	0	0	0	0	0	0	5514	1624	56	5		5	FAM159A	1	53122865	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	5405389	53122865	196127756	33	129520											
SCP2	6342	broad.mit.edu	37	chr1	53480639	53480639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcctggtgcaaaggtgGctctgcagcataatttaggc	12	8	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53480639	T	T	53480639	3	4	151	1	0	0	0	0	1	0	0	0	14047	1203	42	3	1229	3	SCP2	1	53480639	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	357774	53480639	195769982	34	129521											
LRP8	7804	broad.mit.edu	37	chr1	53755277	53755277	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcggagccatcaggacacTcctcctcgccgtcacacttc	7	18	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53755277	A	A	53755277	3	1	151	1	0	0	0	0	1	0	0	0	9050	1551	54	5	2630	5	LRP8	1	53755277	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	274638	53755277	195495344	35	129522											
LRRC42	115353	broad.mit.edu	37	chr1	54426012	54426012	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttgagtaatttatgtatGtactttgtttccctagtgta	7	5	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54426012	C	C	54426012	1	2	151	0	1	0	0	0	0	0	0	0	9087	1392	48	4		4	LRRC42	1	54426012	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	670735	54426012	194824609	36	129523											
C1orf175	374977	broad.mit.edu	37	chr1	55134563	55134563	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttcagaagagccaggatCtgctggaggcagaaggagaa	14	9	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55134563	T	T	55134563	2	4	151	1	0	0	0	0	0	0	0	1	2036	912	32	4		4	C1orf175	1	55134563	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	708551	55134563	194116058	37	129524											
C1orf175	374977	broad.mit.edu	37	chr1	55166854	55166854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgccctccatggtgaaGggcctgaagaacatggatgg	13	11	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55166854	T	T	55166854	3	4	151	1	0	0	0	0	1	0	0	0	2036	991	35	2	3210	2	C1orf175	1	55166854	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	32291	55166854	194083767	38	129525											
C1orf168	199920	broad.mit.edu	37	chr1	57252874	57252874	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagacagggagccctcttcCacagtcactgcaagagaaag	12	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57252874	A	A	57252874	2	1	151	1	0	0	0	0	0	0	0	1	2032	581	21	2		2	C1orf168	1	57252874	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2086020	57252874	191997747	39	129526											
DAB1	1600	broad.mit.edu	37	chr1	57476811	57476811	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaacaaataacaaactggtCacttacagcttcttgctctt	4	11	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57476811	G	G	57476811	1	3	151	0	1	0	0	0	0	0	0	0	4250	841	29	4		4	DAB1	1	57476811	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	223937	57476811	191773810	40	129527											
DAB1	1600	broad.mit.edu	37	chr1	57476878	57476878	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaaagatgtcatctgtGgtaggatcactggcatggga	12	7	5	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57476878	T	T	57476878	2	4	151	1	0	0	0	0	0	0	0	1	4250	1335	47	2		2	DAB1	1	57476878	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	67	57476878	191773743	41	129528											
DAB1	1600	broad.mit.edu	37	chr1	57491769	57491769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaagctggtgctgctgGgccctgctttacacacagta	11	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57491769	T	T	57491769	1	4	151	0	1	0	0	0	0	0	0	0	4250	1247	43	2		2	DAB1	1	57491769	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	14891	57491769	191758852	42	129529											
HOOK1	51361	broad.mit.edu	37	chr1	60312847	60312847	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagccctgaaagatgaaataGatgttcttaggtatggcatg	12	5	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60312847	C	C	60312847	3	2	151	1	0	0	0	0	1	0	0	0	7349	942	33	4	957	4	HOOK1	1	60312847	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2821078	60312847	188937774	43	129530											
KANK4	163782	broad.mit.edu	37	chr1	62734219	62734219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgtcctgtctttcctgcCcagtgcccatgtcaacacca	6	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62734219	A	A	62734219	1	1	151	0	1	0	0	0	0	0	0	0	8049	638	22	2		2	KANK4	1	62734219	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2421372	62734219	186516402	44	129531											
LEPR	3953	broad.mit.edu	37	chr1	66102767	66102767	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatagattatagttgtgGgtgggagagagaaaagaaac	14	1	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66102767	C	C	66102767	1	2	151	0	1	0	0	0	0	0	0	0	8800	1247	43	4		4	LEPR	1	66102767	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	3368548	66102767	183147854	45	129532											
PDE4B	5142	broad.mit.edu	37	chr1	66723362	66723362	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgattgtaactccttttgCccaggtatgtattatgctgg	9	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66723362	T	T	66723362	3	4	151	1	0	0	0	0	1	0	0	0	11734	739	26	4	763	4	PDE4B	1	66723362	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	620595	66723362	182527259	46	129533											
PDE4B	5142	broad.mit.edu	37	chr1	66821341	66821341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacctgttttataactgGggttttcagaattaatttct	6	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66821341	T	T	66821341	1	4	151	0	1	0	0	0	0	0	0	0	11734	1247	43	2		2	PDE4B	1	66821341	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	97979	66821341	182429280	47	129534											
WLS	79971	broad.mit.edu	37	chr1	68619175	68619175	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaagccagtattcctgaAgagcgctccaaaaccagctc	9	12	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68619175	C	C	68619175	1	2	151	0	1	0	0	0	0	0	0	0	17503	87	3	5		5	WLS	1	68619175	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1797834	68619175	180631446	48	129535											
LRRC7	57554	broad.mit.edu	37	chr1	70446033	70446033	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatttaattttgttttccTctctccttcctccccacttc	1	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70446033	C	C	70446033	1	2	151	0	1	0	0	0	0	0	0	0	9107	1566	54	5		5	LRRC7	1	70446033	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1826858	70446033	178804588	49	129536											
LRRC7	57554	broad.mit.edu	37	chr1	70482022	70482022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttaaatattgttcagGctgctcaatggagaagggat	10	4	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70482022	T	T	70482022	1	4	151	0	1	0	0	0	0	0	0	0	9107	1218	42	3		3	LRRC7	1	70482022	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	35989	70482022	178768599	50	129537											
ANKRD13C	81573	broad.mit.edu	37	chr1	70758026	70758026	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaatgaaatctatcccCtctcttcttagaaaactaca	3	12	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70758026	T	T	70758026	1	4	151	0	1	0	0	0	0	0	0	0	643	696	24	4		4	ANKRD13C	1	70758026	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	276004	70758026	178492595	51	129538											
TNNI3K	51086	broad.mit.edu	37	chr1	74819586	74819586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaataatgctattatgtgGtgatgactgtcttttgaaaa	10	3	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74819586	T	T	74819586	1	4	151	0	1	0	0	0	0	0	0	0	16452	1276	44	3		3	TNNI3K	1	74819586	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	4061560	74819586	174431035	52	129539											
C1orf173	127254	broad.mit.edu	37	chr1	75037557	75037557	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacttttctgccattatGggatcttcctcagcaacagc	7	12	3	1	rs17095605	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75037557	T	T	75037557	2	4	151	1	0	0	0	0	0	0	0	1	2034	1335	47	2		2	C1orf173	1	75037557	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	217971	75037557	174213064	53	129540											
C1orf173	127254	broad.mit.edu	37	chr1	75065731	75065731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctgagcctttctttgCttcttctttttcgttcaatt	4	11	5	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75065731	A	A	75065731	1	1	151	0	1	0	0	0	0	0	0	0	2034	812	28	3		3	C1orf173	1	75065731	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	28174	75065731	174184890	54	129541											
LHX8	431707	broad.mit.edu	37	chr1	75626632	75626632	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataaatttgtcatttattaTgtataaaataccattgaaaa	3	3	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75626632	A	A	75626632	1	1	151	0	1	0	0	0	0	0	0	0	8848	1479	51	5		5	LHX8	1	75626632	3'UTR	SNP	T	TCGA-50-5049-01A-01D-1625-08	560901	75626632	173623989	55	129542											
COL24A1	255631	broad.mit.edu	37	chr1	86591502	86591502	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaaacattgagacactttGgtttctaatagtaatggcaa	7	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86591502	A	A	86591502	4	1	151	1	0	0	0	0	0	1	0	0	3715	1357	47	4	4859	4	COL24A1	1	86591502	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	10964870	86591502	162659119	56	129543											
CLCA4	22802	broad.mit.edu	37	chr1	87041270	87041270	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagaagttttggaacttttgGataatggtgcaggtaattca	11	4	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87041270	C	C	87041270	3	2	151	1	0	0	0	0	1	0	0	0	3490	1174	41	4	1981	4	CLCA4	1	87041270	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	449768	87041270	162209351	57	129544											
GBP4	115361	broad.mit.edu	37	chr1	89662871	89662871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatggccaccaccaccaCgggctgagaaatcttgtcaa	8	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89662871	A	A	89662871	3	1	151	1	0	0	0	0	1	0	0	0	6338	536	19	3	1805	3	GBP4	1	89662871	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2621601	89662871	159587750	58	129545											
GBP5	115362	broad.mit.edu	37	chr1	89734990	89734990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccttgcttcctcgtactGgatggtgactgtgtgaatgg	12	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89734990	T	T	89734990	1	4	151	0	1	0	0	0	0	0	0	0	6339	1363	47	2		2	GBP5	1	89734990	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	72119	89734990	159515631	59	129546											
BRDT	676	broad.mit.edu	37	chr1	92446675	92446675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacactgaaagcatcaacaCtaagagaattagaaaaatat	5	6	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92446675	A	A	92446675	3	1	151	1	0	0	0	0	1	0	0	0	1517	564	20	3	1724	3	BRDT	1	92446675	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2711685	92446675	156803946	60	129547											
PTBP2	58155	broad.mit.edu	37	chr1	97217100	97217100	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcatttgccattttaggGggcagaatgttaaaactcaa	9	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97217100	C	C	97217100	1	2	151	0	1	0	0	0	0	0	0	0	12832	1247	43	4		4	PTBP2	1	97217100	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	4770425	97217100	152033521	61	129548											
DPYD	1806	broad.mit.edu	37	chr1	97981407	97981407	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatttataaacttcaatcCggccatttctacactaatgt	5	9	2	0	rs142619737	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97981407	G	G	97981407	3	3	151	1	0	0	0	0	1	0	0	0	4785	661	23	4	1506	4	DPYD	1	97981407	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	764307	97981407	151269214	62	129549											
DPYD	1806	broad.mit.edu	37	chr1	98206097	98206097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagataatctattttctacCttatactcattcagagtccg	5	9	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98206097	A	A	98206097	1	1	151	0	1	0	0	0	0	0	0	0	4785	696	24	2		2	DPYD	1	98206097	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	224690	98206097	151044524	63	129550											
LPPR5	163404	broad.mit.edu	37	chr1	99418657	99418657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctgcatagacactgagaGctgcttctttggatggaaag	12	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99418657	T	T	99418657	3	4	151	1	0	0	0	0	1	0	0	0	9015	971	34	3	391	3	LPPR5	1	99418657	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1212560	99418657	149831964	64	129551											
LPPR4	9890	broad.mit.edu	37	chr1	99772549	99772549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaggaacctcccccacaCgggcttataaggattgagtg	10	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99772549	A	A	99772549	2	1	151	1	0	0	0	0	0	0	0	1	9014	527	19	3		3	LPPR4	1	99772549	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	353892	99772549	149478072	65	129552											
SASS6	163786	broad.mit.edu	37	chr1	100572836	100572836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttgttaaaaaaaaaaaCaagaccaaagccatttgtta	4	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100572836	A	A	100572836	1	1	151	0	1	0	0	0	0	0	0	0	13962	493	17	3		3	SASS6	1	100572836	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	800287	100572836	148677785	66	129553											
OLFM3	118427	broad.mit.edu	37	chr1	102290605	102290605	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctttttcatgcagtcacgaAgtcttgtttccaagctcagc	8	11	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102290605	T	T	102290605	3	4	151	1	0	0	0	0	1	0	0	0	10949	72	3	5	819	5	OLFM3	1	102290605	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1717769	102290605	146960016	67	129554											
COL11A1	1301	broad.mit.edu	37	chr1	103352510	103352510	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccattccatccgagtaatCaagaatattatcatctgcat	4	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103352510	A	A	103352510	3	1	151	1	0	0	0	0	1	0	0	0	3699	826	29	3	729	3	COL11A1	1	103352510	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1061905	103352510	145898111	68	129555											
COL11A1	1301	broad.mit.edu	37	chr1	103484467	103484467	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaatataacccccaacctCttaattacatgaatataaga	4	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103484467	A	A	103484467	1	1	151	0	1	0	0	0	0	0	0	0	3699	928	32	3		3	COL11A1	1	103484467	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	131957	103484467	145766154	69	129556											
CSF1	1435	broad.mit.edu	37	chr1	110466876	110466876	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggggcagagcctggcggggGtgcaggtggggggacagctt	23	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110466876	C	C	110466876	1	2	151	0	1	0	0	0	0	0	0	0	3965	1276	44	4		4	CSF1	1	110466876	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	6982409	110466876	138783745	70	129557											
KCNA2	3737	broad.mit.edu	37	chr1	111145926	111145926	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagacatcagttaacattttGgtaatattcacatagtttgt	6	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111145926	C	C	111145926	2	2	151	1	0	0	0	0	0	0	0	1	8073	1335	47	4		4	KCNA2	1	111145926	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	679050	111145926	138104695	71	129558											
CHI3L2	1117	broad.mit.edu	37	chr1	111772460	111772460	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacagatttctctttccaCccatctattgcaggtgtagt	6	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111772460	T	T	111772460	1	4	151	0	1	0	0	0	0	0	0	0	3372	522	18	4		4	CHI3L2	1	111772460	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	626534	111772460	137478161	72	129559											
C1orf162	128346	broad.mit.edu	37	chr1	112020456	112020456	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accgtcattggaattcccctCcatactcttcattatctgct	4	14	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112020456	T	T	112020456	1	4	151	0	1	0	0	0	0	0	0	0	2030	870	30	4		4	C1orf162	1	112020456	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	247996	112020456	137230165	73	129560											
CD58	965	broad.mit.edu	37	chr1	117078535	117078537	+	Intron	DEL	CAC	-	-													attgtgaaccttgtgttagtCaccacatctgtggtctgaaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117078537	-	-	117078535	6	5	151	0	1	1	0	1	0	0	0	0	3055	841	29	0		0	CD58	1	117078535	Intron	DEL	CAC	TCGA-50-5049-01A-01D-1625-08	5058079	117078535	132172086	74	129561											
IGSF3	3321	broad.mit.edu	37	chr1	117127668	117127668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttggctgagcctcaggCggctgtctggaacagtaagg	17	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117127668	A	A	117127668	3	1	151	1	0	0	0	0	1	0	0	0	7671	768	27	3	1149	3	IGSF3	1	117127668	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	49133	117127668	132122953	75	129562											
IGSF3	3321	broad.mit.edu	37	chr1	117146107	117146107	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaataaaatagacataaagGaaagtacttcaaactctata	5	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117146107	C	C	117146107	1	2	151	0	1	0	0	0	0	0	0	0	7671	1189	41	4		4	IGSF3	1	117146107	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	18439	117146107	132104514	76	129563											
TRIM45	80263	broad.mit.edu	37	chr1	117655223	117655223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcaagaggaacaagctGtctgactgttgtgcagtcag	13	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117655223	T	T	117655223	1	4	151	0	1	0	0	0	0	0	0	0	16645	1392	48	3		3	TRIM45	1	117655223	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	509116	117655223	131595398	77	129564											
SPAG17	200162	broad.mit.edu	37	chr1	118550606	118550606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttactgccccagagaagtGggttttctcagctgaataga	10	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118550606	T	T	118550606	1	4	151	0	1	0	0	0	0	0	0	0	15095	1363	47	2		2	SPAG17	1	118550606	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	895383	118550606	130700015	78	129565											
SPAG17	200162	broad.mit.edu	37	chr1	118574352	118574352	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtgttcttcttctttaAgggattctttgggtttttct	10	5	5	0	rs144404732		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118574352	G	G	118574352	3	3	151	1	0	0	0	0	1	0	0	0	15095	72	3	5	3195	5	SPAG17	1	118574352	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	23746	118574352	130676269	79	129566											
HSD3B2	3284	broad.mit.edu	37	chr1	119987869	119987869	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccctcccttagggatacttCctgacactgaaagcatgctc	8	14	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119987869	A	A	119987869	1	1	151	0	1	0	0	0	0	0	0	0	7458	870	30	3		3	HSD3B2	1	119987869	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	1413517	119987869	129262752	80	129567											
PHGDH	26227	broad.mit.edu	37	chr1	120277742	120277742	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcccagatccataacaggGactcctgccccagagcatct	9	15	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120277742	T	T	120277742	1	4	151	0	1	0	0	0	0	0	0	0	11936	1189	41	3		3	PHGDH	1	120277742	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	289873	120277742	128972879	81	129568											
PDE4DIP	9659	broad.mit.edu	37	chr1	144866006	144866006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctctcaaagatactgccCcaacccagcagaaaacccca	4	16	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144866006	A	A	144866006	1	1	151	0	1	0	0	0	0	0	0	0	11737	638	22	2		2	PDE4DIP	1	144866006	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	24588264	144866006	104384615	82	129569											
ITGA10	8515	broad.mit.edu	37	chr1	145532959	145532959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcctttccaactgagccCagcagaccctcagtgatctt	7	15	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145532959	A	A	145532959	1	1	151	0	1	0	0	0	0	0	0	0	7943	609	21	2		2	ITGA10	1	145532959	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	666953	145532959	103717662	83	129570											
ANKRD35	148741	broad.mit.edu	37	chr1	145562033	145562033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggagccctaaaggcagCcccagggagcatcaaacagg	14	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145562033	A	A	145562033	3	1	151	1	0	0	0	0	1	0	0	0	664	739	26	3	1759	3	ANKRD35	1	145562033	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	29074	145562033	103688588	84	129571											
PIAS3	10401	broad.mit.edu	37	chr1	145578347	145578347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaacgctgttggcccctGgcaccctgctgggccccaag	11	19	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145578347	T	T	145578347	3	4	151	1	0	0	0	0	1	0	0	0	11972	1348	47	2	316	2	PIAS3	1	145578347	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	16314	145578347	103672274	85	129572											
GJA8	2703	broad.mit.edu	37	chr1	147380357	147380357	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccaccccgtccctgatgtAcgtggggcacgcggtgcact	12	16	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147380357	T	T	147380357	3	4	151	1	0	0	0	0	1	0	0	0	6469	391	14	5	277	5	GJA8	1	147380357	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1802010	147380357	101870264	86	129573											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149399187	149399187	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggatccggcatttttgcgCgaaaaaagagaacagagact	11	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149399187	A	A	149399187	1	1	151	0	1	0	0	0	0	0	0	0	7247	783	27	3		3	HIST2H2BF	1	149399187	RNA	SNP	C	TCGA-50-5049-01A-01D-1625-08	2018830	149399187	99851434	87	129574											
MRPS21	54460	broad.mit.edu	37	chr1	150280583	150280583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctatgaaaggtgccggcGgatctacaacatggaaatgg	13	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150280583	T	T	150280583	3	4	151	1	0	0	0	0	1	0	0	0	9926	1116	39	1	191	1	MRPS21	1	150280583	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	881396	150280583	98970038	88	129575											
LASS2	29956	broad.mit.edu	37	chr1	150940140	150940140	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaagcagaactcatacCtgtatgggatatccctccca	9	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150940140	G	G	150940140	3	3	151	1	0	0	0	0	1	0	0	0	8711	695	24	4	647	4	LASS2	1	150940140	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	659557	150940140	98310481	89	129576											
PIP5K1A	8394	broad.mit.edu	37	chr1	151206944	151206944	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgacatgtacaacgctcTctgtaagaccctgcagcgtg	10	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151206944	A	A	151206944	3	1	151	1	0	0	0	0	1	0	0	0	12034	1551	54	5	941	5	PIP5K1A	1	151206944	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	266804	151206944	98043677	90	129577											
POGZ	23126	broad.mit.edu	37	chr1	151377695	151377695	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttatgcaggaagttcttGacagttcttttgatgcatac	8	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151377695	C	C	151377695	2	2	151	1	0	0	0	0	0	0	0	1	12281	1277	45	4		4	POGZ	1	151377695	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	170751	151377695	97872926	91	129578											
FLG	2312	broad.mit.edu	37	chr1	152278945	152278945	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagtgtccagagctatctAccgaatgctcgtggtggtac	12	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152278945	G	G	152278945	3	3	151	1	0	0	0	0	1	0	0	0	5979	391	14	5	3772	5	FLG	1	152278945	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	901250	152278945	96971676	92	129579											
FLG	2312	broad.mit.edu	37	chr1	152280577	152280577	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgatggtttctggacgcaGacccagaccgcctctcagaa	10	13	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152280577	T	T	152280577	3	4	151	1	0	0	0	0	1	0	0	0	5979	942	33	3	5404	3	FLG	1	152280577	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1632	152280577	96970044	93	129580											
LCE2C	353140	broad.mit.edu	37	chr1	152648701	152648701	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctctggggctggtggCtgctccctgagccaccacag	14	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152648701	A	A	152648701	2	1	151	1	0	0	0	0	0	0	0	1	8739	784	28	3		3	LCE2C	1	152648701	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	368124	152648701	96601920	94	129581											
PGLYRP4	57115	broad.mit.edu	37	chr1	153309769	153309769	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcgccatcctggcccacCaggaagctagaggaccacaa	11	14	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153309769	A	A	153309769	2	1	151	1	0	0	0	0	0	0	0	1	11891	581	21	2		2	PGLYRP4	1	153309769	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	661068	153309769	95940852	95	129582											
S100A7A	338324	broad.mit.edu	37	chr1	153390625	153390625	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcacaaatacaccggaCgtgatggcaagattgagaag	11	7	1	3	rs146005479		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153390625	T	T	153390625	3	4	151	1	0	0	0	0	1	0	0	0	13895	536	19	4	69	4	S100A7A	1	153390625	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	80856	153390625	95859996	96	129583											
CRTC2	200186	broad.mit.edu	37	chr1	153924914	153924915	+	Frame_Shift_Del	DEL	TG	-	-													gaccgaggtcgggaagaggaTgaggatagctgaggagagaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153924915	-	-	153924914	7	5	151	1	0	1	0	1	0	0	0	0	3932	1451	51	0	1394	0	CRTC2	1	153924914	Frame_Shift_Del	DEL	TG	TCGA-50-5049-01A-01D-1625-08	534289	153924914	95325707	97	129584											
HCN3	57657	broad.mit.edu	37	chr1	155254832	155254833	+	Intron	DNP	GG	AT	AT													ggccctgtgtatccatgtctGgttccacgtttcaccccttt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	155254833	AT	AT	155254832	1	1	151	0	1	0	0	0	0	0	0	0	7064	1363	47	4		4	HCN3	1	155254832	Intron	DNP	GG	TCGA-50-5049-01A-01D-1625-08	1329918	155254832	93995789	98	129585											
GON4L	54856	broad.mit.edu	37	chr1	155726714	155726714	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgacagagcgagattcTgtctcaaaaacaaacaaata	9	7	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155726714	C	C	155726714	1	2	151	0	1	0	0	0	0	0	0	0	6636	1595	55	5		5	GON4L	1	155726714	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	471882	155726714	93523907	99	129586											
ARHGEF2	9181	broad.mit.edu	37	chr1	155919986	155919986	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtccctccctagagttacTacaagcctcacaggtcagtt	7	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155919986	C	C	155919986	1	2	151	0	1	0	0	0	0	0	0	0	905	1537	53	5		5	ARHGEF2	1	155919986	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	193272	155919986	93330635	100	129587											
PMF1	11243	broad.mit.edu	37	chr1	156209462	156209462	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccagcatgcctggcctgGgcgggctacctctgagaacg	15	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156209462	T	T	156209462	1	4	151	0	1	0	0	0	0	0	0	0	12228	1247	43	2		2	PMF1	1	156209462	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	289476	156209462	93041159	101	129588											
SMG5	23381	broad.mit.edu	37	chr1	156221156	156221156	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtggaggagcaaggcagGtggcctgaggttctaggggt	19	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156221156	A	A	156221156	1	1	151	0	1	0	0	0	0	0	0	0	14910	1276	44	4		4	SMG5	1	156221156	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	11694	156221156	93029465	102	129589											
RHBG	57127	broad.mit.edu	37	chr1	156348337	156348337	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctgctgtgagagctctgGgacctgcctgcacttatcat	10	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156348337	T	T	156348337	1	4	151	0	1	0	0	0	0	0	0	0	13433	1247	43	2		2	RHBG	1	156348337	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	127181	156348337	92902284	103	129590											
INSRR	3645	broad.mit.edu	37	chr1	156813135	156813135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcccaaggctatcttctGcaagaaggtcttctggaagt	10	9	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156813135	C	C	156813135	1	2	151	0	1	0	0	0	0	0	0	0	7844	1334	46	4		4	INSRR	1	156813135	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	464798	156813135	92437486	104	129591											
FCRL5	83416	broad.mit.edu	37	chr1	157490895	157490895	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttccagagtgctctgcagtCagagagaggtttaaggacgc	13	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157490895	A	A	157490895	2	1	151	1	0	0	0	0	0	0	0	1	5855	813	29	3		3	FCRL5	1	157490895	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	677760	157490895	91759726	105	129592											
FCRL2	79368	broad.mit.edu	37	chr1	157716558	157716558	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaagagtagatgacttGggagtcctgggagagacaca	14	7	0	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157716558	T	T	157716558	3	4	151	1	0	0	0	0	1	0	0	0	5852	1357	47	2	35	2	FCRL2	1	157716558	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	225663	157716558	91534063	106	129593											
FCRL2	79368	broad.mit.edu	37	chr1	157737016	157737016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatccaggtaacacccaCccacctgagatggagactgg	10	13	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157737016	A	A	157737016	1	1	151	0	1	0	0	0	0	0	0	0	5852	522	18	3		3	FCRL2	1	157737016	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	20458	157737016	91513605	107	129594											
FCRL1	115350	broad.mit.edu	37	chr1	157772257	157772257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcatcactctccctcaCtgaaggaatctcatactctg	5	15	6	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157772257	A	A	157772257	3	1	151	1	0	0	0	0	1	0	0	0	5851	565	20	3	870	3	FCRL1	1	157772257	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	35241	157772257	91478364	108	129595											
CD1A	909	broad.mit.edu	37	chr1	158227187	158227187	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgggatggattataacatcCttggtgtctccccaaattca	8	9	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158227187	G	G	158227187	1	3	151	0	1	0	0	0	0	0	0	0	3004	696	24	4		4	CD1A	1	158227187	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	454930	158227187	91023434	109	129596											
CD1B	910	broad.mit.edu	37	chr1	158299213	158299213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgtgcttcacccgacagGacaggccagccgcctcccca	10	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158299213	T	T	158299213	3	4	151	1	0	0	0	0	1	0	0	0	3005	1174	41	3	180	3	CD1B	1	158299213	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	72026	158299213	90951408	110	129597											
CD1B	910	broad.mit.edu	37	chr1	158299803	158299803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttctggggaaggcacaCatgaagcattcttgacactc	9	12	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158299803	A	A	158299803	3	1	151	1	0	0	0	0	1	0	0	0	3005	478	17	3	571	3	CD1B	1	158299803	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	590	158299803	90950818	111	129598											
OR6Y1	391112	broad.mit.edu	37	chr1	158517516	158517516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattacaaatggctacatagCggtcaaaggccatgatagca	10	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158517516	A	A	158517516	3	1	151	1	0	0	0	0	1	0	0	0	11307	768	27	3	599	3	OR6Y1	1	158517516	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	217713	158517516	90733105	112	129599											
OR10Z1	128368	broad.mit.edu	37	chr1	158577045	158577045	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actctcttgagagagatcagCttattgccatgacctatact	7	10	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158577045	G	G	158577045	3	3	151	1	0	0	0	0	1	0	0	0	11017	797	28	4	819	4	OR10Z1	1	158577045	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	59529	158577045	90673576	113	129600											
SPTA1	6708	broad.mit.edu	37	chr1	158623284	158623284	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaaacgggagagacttcaaCactaagtctcttggcccagg	10	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158623284	G	G	158623284	1	3	151	0	1	0	0	0	0	0	0	0	15234	493	17	4		4	SPTA1	1	158623284	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	46239	158623284	90627337	114	129601											
IFI16	3428	broad.mit.edu	37	chr1	159019453	159019453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgacaaggattaacacaaCcgtgaaagcacctcaccaat	6	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159019453	A	A	159019453	1	1	151	0	1	0	0	0	0	0	0	0	7581	522	18	3		3	IFI16	1	159019453	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	396169	159019453	90231168	115	129602											
FCER1A	2205	broad.mit.edu	37	chr1	159272653	159272653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttttgcagctccagatgGcgtgttagcaggtgagtcct	13	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159272653	T	T	159272653	3	4	151	1	0	0	0	0	1	0	0	0	5831	1203	42	3	71	3	FCER1A	1	159272653	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	253200	159272653	89977968	116	129603											
OR10J3	441911	broad.mit.edu	37	chr1	159284477	159284477	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctaggtttgaaagagctGggcagaggaaagaaacatat	14	4	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159284477	T	T	159284477	1	4	151	0	1	0	0	0	0	0	0	0	11005	1363	47	2		2	OR10J3	1	159284477	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	11824	159284477	89966144	117	129604											
SLAMF9	89886	broad.mit.edu	37	chr1	159923983	159923983	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagtccccaggactgtGcagaagactgcattaggagg	13	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159923983	A	A	159923983	1	1	151	0	1	0	0	0	0	0	0	0	14484	1334	46	4		4	SLAMF9	1	159923983	5'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	639506	159923983	89326638	118	129605											
ATP1A4	480	broad.mit.edu	37	chr1	160143830	160143830	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcaatgaagctatagtcAagatgggcaccaagacccct	10	10	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160143830	T	T	160143830	1	4	151	0	1	0	0	0	0	0	0	0	1135	145	5	5		5	ATP1A4	1	160143830	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	219847	160143830	89106791	119	129606											
NHLH1	4807	broad.mit.edu	37	chr1	160340859	160340859	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccgacaagaagctctccaAgattgagattctgcgcctgg	10	13	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160340859	G	G	160340859	3	3	151	1	0	0	0	0	1	0	0	0	10498	72	3	5	340	5	NHLH1	1	160340859	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	197029	160340859	88909762	120	129607											
ADAMTS4	9507	broad.mit.edu	37	chr1	161165915	161165915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaacttgctaccccctccCccaccttctcctccctaata	3	20	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161165915	A	A	161165915	1	1	151	0	1	0	0	0	0	0	0	0	268	638	22	2		2	ADAMTS4	1	161165915	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	825056	161165915	88084706	121	129608											
FCER1G	2207	broad.mit.edu	37	chr1	161188691	161188691	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgagcaccaggaaccaGgagacttacgagactctgaa	12	11	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161188691	A	A	161188691	2	1	151	1	0	0	0	0	0	0	0	1	5832	991	35	4		4	FCER1G	1	161188691	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	22776	161188691	88061930	122	129609											
APOA2	336	broad.mit.edu	37	chr1	161192528	161192528	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaaggcccagttcttgcTgttcctctctatctaagaga	7	11	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161192528	C	C	161192528	1	2	151	0	1	0	0	0	0	0	0	0	784	1595	55	5		5	APOA2	1	161192528	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	3837	161192528	88058093	123	129610											
FCGR2A	2212	broad.mit.edu	37	chr1	161487915	161487915	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acctgactcttcctcccaacGaccatgtcaacagtaataac	4	15	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161487915	C	C	161487915	3	2	151	1	0	0	0	0	1	0	0	0	5838	1058	37	4	957	4	FCGR2A	1	161487915	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	295387	161487915	87762706	124	129611											
DDR2	4921	broad.mit.edu	37	chr1	162745481	162745481	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaagatcatgtctcggctCaaggacccaaacatcatcca	6	12	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162745481	A	A	162745481	2	1	151	1	0	0	0	0	0	0	0	1	4370	813	29	3		3	DDR2	1	162745481	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1257566	162745481	86505140	125	129612											
RGS4	5999	broad.mit.edu	37	chr1	163044417	163044417	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaacctgaggccaaataTtgatctgtattaagctccag	9	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163044417	A	A	163044417	1	1	151	0	1	0	0	0	0	0	0	0	13416	1508	52	5		5	RGS4	1	163044417	3'UTR	SNP	T	TCGA-50-5049-01A-01D-1625-08	298936	163044417	86206204	126	129613											
FAM78B	149297	broad.mit.edu	37	chr1	166039455	166039455	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcagaggcgtgtgatccaCacacagtcaggccagtctgc	11	13	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166039455	G	G	166039455	1	3	151	0	1	0	0	0	0	0	0	0	5680	493	17	4		4	FAM78B	1	166039455	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	2995038	166039455	83211166	127	129614											
FAM78B	149297	broad.mit.edu	37	chr1	166135184	166135184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcaagcagagctgggggCccagagtccgctcccgtgcc	16	14	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166135184	A	A	166135184	1	1	151	0	1	0	0	0	0	0	0	0	5680	754	26	3		3	FAM78B	1	166135184	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	95729	166135184	83115437	128	129615											
XCL2	6846	broad.mit.edu	37	chr1	168510202	168510202	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagactactagccagtcagGgtcacagctgtattggtcga	12	9	2	1	rs149372418	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168510202	A	A	168510202	2	1	151	1	0	0	0	0	0	0	0	1	17551	1219	43	4		4	XCL2	1	168510202	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	2375018	168510202	80740419	129	129616											
DPT	1805	broad.mit.edu	37	chr1	168670289	168670289	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtggttgttgctcctcGgatatagtaatcataattgt	10	5	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168670289	T	T	168670289	2	4	151	1	0	0	0	0	0	0	0	1	4779	1124	39	1		1	DPT	1	168670289	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	160087	168670289	80580332	130	129617											
SELP	6403	broad.mit.edu	37	chr1	169565348	169565348	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagggctggacattgcaccCctggagtaggaagtgatgct	15	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169565348	T	T	169565348	3	4	151	1	0	0	0	0	1	0	0	0	14132	623	22	4	596	4	SELP	1	169565348	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	895059	169565348	79685273	131	129618											
SELP	6403	broad.mit.edu	37	chr1	169581475	169581475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttacacactggggctgggGctgtccatacccccgaggct	12	14	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169581475	T	T	169581475	3	4	151	1	0	0	0	0	1	0	0	0	14132	1203	42	3	1595	3	SELP	1	169581475	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	16127	169581475	79669146	132	129619											
SELP	6403	broad.mit.edu	37	chr1	169586396	169586396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttaggttcattatcagcCcagttctcagcctcgttggt	9	10	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169586396	A	A	169586396	3	1	151	1	0	0	0	0	1	0	0	0	14132	624	22	2	2197	2	SELP	1	169586396	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4921	169586396	79664225	133	129620											
FMO2	2327	broad.mit.edu	37	chr1	171178097	171178097	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaactcctattagtatcGcctggttgggcctgggcaat	11	11	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171178097	T	T	171178097	1	4	151	0	1	0	0	0	0	0	0	0	6013	1102	38	3		3	FMO2	1	171178097	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	1591701	171178097	78072524	134	129621											
RC3H1	149041	broad.mit.edu	37	chr1	173947753	173947753	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgcaaaagaggctggagtCtgcaacttaaaaaagataaa	10	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173947753	A	A	173947753	3	1	151	1	0	0	0	0	1	0	0	0	13274	912	32	3	2482	3	RC3H1	1	173947753	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2769656	173947753	75302868	135	129622											
TNN	63923	broad.mit.edu	37	chr1	175049508	175049508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtacatagtcaccctgCgtaacgtcaagaatgaagtt	8	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175049508	A	A	175049508	3	1	151	1	0	0	0	0	1	0	0	0	16446	768	27	3	1004	3	TNN	1	175049508	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1101755	175049508	74201113	136	129623											
ASTN1	460	broad.mit.edu	37	chr1	177030247	177030247	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaggatcctcagctcctcTtctgccgactcatgttgggg	12	12	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177030247	C	C	177030247	2	2	151	1	0	0	0	0	0	0	0	1	1068	1606	56	5		5	ASTN1	1	177030247	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	1980739	177030247	72220374	137	129624											
FAM5B	57795	broad.mit.edu	37	chr1	177249846	177249846	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagacagacttgcaggacCtggagctaaagtacctgctg	13	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177249846	G	G	177249846	3	3	151	1	0	0	0	0	1	0	0	0	5644	680	24	4	1560	4	FAM5B	1	177249846	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	219599	177249846	72000775	138	129625											
RALGPS2	55103	broad.mit.edu	37	chr1	178858785	178858785	+	Frame_Shift_Del	DEL	G	-	-													ttttcattttaggtagcagcGatggttctgaactaagtgaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	178858785	-	-	178858785	7	5	151	1	0	1	0	1	0	0	0	0	13126	1058	37	0	1251	0	RALGPS2	1	178858785	Frame_Shift_Del	DEL	G	TCGA-50-5049-01A-01D-1625-08	1608939	178858785	70391836	139	129626											
ABL2	27	broad.mit.edu	37	chr1	179077507	179077507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctccagaggatgtgacCtgatgctcagataagagctt	11	8	2	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179077507	A	A	179077507	3	1	151	1	0	0	0	0	1	0	0	0	93	680	24	2	657	2	ABL2	1	179077507	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	218722	179077507	70173114	140	129627											
C1orf125	126859	broad.mit.edu	37	chr1	179437807	179437807	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataggtttcttttgttctgaGataattttcctaaaggtttg	8	4	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179437807	C	C	179437807	1	2	151	0	1	0	0	0	0	0	0	0	2013	957	33	4		4	C1orf125	1	179437807	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	360300	179437807	69812814	141	129628											
C1orf125	126859	broad.mit.edu	37	chr1	179504155	179504155	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttatgaaagaaaatttgaCtgggccacaaatattgtaga	8	4	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179504155	T	T	179504155	1	4	151	0	1	0	0	0	0	0	0	0	2013	580	20	4		4	C1orf125	1	179504155	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	66348	179504155	69746466	142	129629											
STX6	10228	broad.mit.edu	37	chr1	180945565	180945565	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaggagccatgtcaattgTggggtcacacggagaaaagt	15	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180945565	C	C	180945565	1	2	151	0	1	0	0	0	0	0	0	0	15467	1711	59	5		5	STX6	1	180945565	3'UTR	SNP	T	TCGA-50-5049-01A-01D-1625-08	1441410	180945565	68305056	143	129630											
CACNA1E	777	broad.mit.edu	37	chr1	181620652	181620652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgcctcctgactcatggCagattcattcatttaacctt	5	11	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181620652	A	A	181620652	1	1	151	0	1	0	0	0	0	0	0	0	2568	725	25	3		3	CACNA1E	1	181620652	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	675087	181620652	67629969	144	129631											
DHX9	1660	broad.mit.edu	37	chr1	182841640	182841640	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttcaaggtaatattgtgGgggtggtataggaacatctt	13	4	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182841640	T	T	182841640	1	4	151	0	1	0	0	0	0	0	0	0	4556	1247	43	2		2	DHX9	1	182841640	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1220988	182841640	66408981	145	129632											
HMCN1	83872	broad.mit.edu	37	chr1	186023012	186023012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattttatctgggggcagGcaattacaaatttcaattgc	9	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186023012	T	T	186023012	3	4	151	1	0	0	0	0	1	0	0	0	7287	1194	42	3	6930	3	HMCN1	1	186023012	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3181372	186023012	63227609	146	129633											
FAM5C	339479	broad.mit.edu	37	chr1	190234075	190234075	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaataagaagcggctaGctgatgtagcgtctccagag	12	7	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190234075	C	C	190234075	3	2	151	1	0	0	0	0	1	0	0	0	5645	962	34	4	1782	4	FAM5C	1	190234075	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4211063	190234075	59016546	147	129634											
RGS18	64407	broad.mit.edu	37	chr1	192153423	192153423	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacactttttttctgtttatCcaggttaaccttgattttca	4	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192153423	G	G	192153423	1	3	151	0	1	0	0	0	0	0	0	0	13409	870	30	4		4	RGS18	1	192153423	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1919348	192153423	57097198	148	129635											
KCNT2	343450	broad.mit.edu	37	chr1	196395110	196395110	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaggacacaaaatcaccacAtaataatcctattcaaaaca	3	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196395110	T	T	196395110	4	4	151	1	0	0	0	0	0	1	0	0	8162	224	8	5	2486	5	KCNT2	1	196395110	Nonsense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	4241687	196395110	52855511	149	129636											
F13B	2165	broad.mit.edu	37	chr1	197026404	197026404	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagcaaagcttcttcaaGgtgttactaaccaatgcatt	6	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197026404	T	T	197026404	1	4	151	0	1	0	0	0	0	0	0	0	5384	1015	35	2		2	F13B	1	197026404	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	631294	197026404	52224217	150	129637											
ASPM	259266	broad.mit.edu	37	chr1	197073483	197073483	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcacaatgacagcagagCgtgttttctggtaagatgct	12	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197073483	G	G	197073483	3	3	151	1	0	0	0	0	1	0	0	0	1060	768	27	4	5579	4	ASPM	1	197073483	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	47079	197073483	52177138	151	129638											
PTPRC	5788	broad.mit.edu	37	chr1	198682150	198682150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggagtaattacctggaatCcccctcaaagatcatttcat	6	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198682150	A	A	198682150	3	1	151	1	0	0	0	0	1	0	0	0	12905	855	30	3	1287	3	PTPRC	1	198682150	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1608667	198682150	50568471	152	129639											
C1orf106	55765	broad.mit.edu	37	chr1	200867606	200867606	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgttcagggaaatccccCtgccctagtccctagtccct	9	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200867606	T	T	200867606	1	4	151	0	1	0	0	0	0	0	0	0	2000	696	24	4		4	C1orf106	1	200867606	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2185456	200867606	48383015	153	129640											
NAV1	89796	broad.mit.edu	37	chr1	201687958	201687958	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcgacgccttaaaagtggAgtggaacccaaaacgggttt	12	8	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201687958	T	T	201687958	1	4	151	0	1	0	0	0	0	0	0	0	10277	319	11	5		5	NAV1	1	201687958	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	820352	201687958	47562663	154	129641											
SHISA4	149345	broad.mit.edu	37	chr1	201858597	201858597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggcgaggactgcctgtGgtacctggaccggaatggct	17	11	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201858597	T	T	201858597	3	4	151	1	0	0	0	0	1	0	0	0	14395	1357	47	2	104	2	SHISA4	1	201858597	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	170639	201858597	47392024	155	129642											
UBE2T	29089	broad.mit.edu	37	chr1	202300918	202300918	+	3'UTR	DEL	C	-	-													aaggtaggcaacttagatcaCcttggcaaagaacacattaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	202300918	-	-	202300918	6	5	151	0	1	1	0	1	0	0	0	0	16999	522	18	0		0	UBE2T	1	202300918	3'UTR	DEL	C	TCGA-50-5049-01A-01D-1625-08	442321	202300918	46949703	156	129643											
PPFIA4	8497	broad.mit.edu	37	chr1	203024848	203024848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcactggaccctgcaccGggggaggttttaagggatgg	16	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203024848	T	T	203024848	1	4	151	0	1	0	0	0	0	0	0	0	12408	1131	39	1		1	PPFIA4	1	203024848	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	723930	203024848	46225773	157	129644											
ADORA1	134	broad.mit.edu	37	chr1	203134389	203134389	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccctcctctcccccagGtacaagatggtggtgacccc	9	17	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203134389	T	T	203134389	2	4	151	1	0	0	0	0	0	0	0	1	326	1275	44	3		3	ADORA1	1	203134389	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	109541	203134389	46116232	158	129645											
MYBPH	4608	broad.mit.edu	37	chr1	203144312	203144312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcaagaaagggcaggtGggtgggttgaggagcctact	19	5	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203144312	T	T	203144312	1	4	151	0	1	0	0	0	0	0	0	0	10108	1363	47	2		2	MYBPH	1	203144312	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	9923	203144312	46106309	159	129646											
MYBPH	4608	broad.mit.edu	37	chr1	203144711	203144711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcaggcttagtggctgtgGaggctgtaggggcctgtggg	21	6	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203144711	T	T	203144711	3	4	151	1	0	0	0	0	1	0	0	0	10108	1174	41	3	1300	3	MYBPH	1	203144711	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	399	203144711	46105910	160	129647											
PRELP	5549	broad.mit.edu	37	chr1	203452913	203452913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagaacctgctgctcctgGatctccagcacaacaggctg	11	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203452913	T	T	203452913	3	4	151	1	0	0	0	0	1	0	0	0	12579	1174	41	3	603	3	PRELP	1	203452913	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	308202	203452913	45797708	161	129648											
REN	5972	broad.mit.edu	37	chr1	204135284	204135284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgggaaggtgggaaccctGcacccctcccaccccttctc	10	17	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204135284	T	T	204135284	1	4	151	0	1	0	0	0	0	0	0	0	13332	1334	46	3		3	REN	1	204135284	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	682371	204135284	45115337	162	129649											
KLHDC8A	55220	broad.mit.edu	37	chr1	205308824	205308824	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtggcagcatatctcggGgtgggcatgggtgctaggga	20	6	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205308824	T	T	205308824	2	4	151	1	0	0	0	0	0	0	0	1	8433	1219	43	2		2	KLHDC8A	1	205308824	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1173540	205308824	43941797	163	129650											
CDK18	5129	broad.mit.edu	37	chr1	205492412	205492412	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caattcaaccagctccacaaCcggcggaatgagagtgaggg	12	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205492412	G	G	205492412	3	3	151	1	0	0	0	0	1	0	0	0	3164	506	18	4	119	4	CDK18	1	205492412	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	183588	205492412	43758209	164	129651											
KCNH1	3756	broad.mit.edu	37	chr1	211032486	211032486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacacaagctcttcactaCaatcacacagtaggaaagaa	7	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211032486	A	A	211032486	1	1	151	0	1	0	0	0	0	0	0	0	8101	493	17	3		3	KCNH1	1	211032486	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	5540074	211032486	38218135	165	129652											
KCNH1	3756	broad.mit.edu	37	chr1	211034922	211034922	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaatttctacccattctgtCaggttctgttggtttatcag	7	8	5	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211034922	G	G	211034922	1	3	151	0	1	0	0	0	0	0	0	0	8101	841	29	4		4	KCNH1	1	211034922	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2436	211034922	38215699	166	129653											
CENPF	1063	broad.mit.edu	37	chr1	214815375	214815375	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaagtgagaaggagaagGagtgcctgcagcatgaatta	15	4	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214815375	T	T	214815375	4	4	151	1	0	0	0	0	0	1	0	0	3261	1175	41	3	3736	3	CENPF	1	214815375	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3780453	214815375	34435246	167	129654											
USH2A	7399	broad.mit.edu	37	chr1	215847399	215847399	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctcaggcaatagaaaggtCagcagtggcttactctcaga	12	9	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215847399	G	G	215847399	1	3	151	0	1	0	0	0	0	0	0	0	17162	841	29	4		4	USH2A	1	215847399	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1032024	215847399	33403222	168	129655											
USH2A	7399	broad.mit.edu	37	chr1	215847618	215847618	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagttcactaagatctcctgAggacccctggcctgcaattt	8	13	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215847618	T	T	215847618	2	4	151	1	0	0	0	0	0	0	0	1	17162	291	11	5		5	USH2A	1	215847618	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	219	215847618	33403003	169	129656											
USH2A	7399	broad.mit.edu	37	chr1	216420508	216420508	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacactggcagggctcacatCcaacatcattaaagcttcgg	8	12	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216420508	G	G	216420508	3	3	151	1	0	0	0	0	1	0	0	0	17162	855	30	4	13634	4	USH2A	1	216420508	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	572890	216420508	32830113	170	129657											
GPATCH2	55105	broad.mit.edu	37	chr1	217793069	217793069	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaattaaaatataaaacaTtcaaccacaaacactggaga	3	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217793069	A	A	217793069	1	1	151	0	1	0	0	0	0	0	0	0	6656	1508	52	5		5	GPATCH2	1	217793069	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1372561	217793069	31457552	171	129658											
EPRS	2058	broad.mit.edu	37	chr1	220195814	220195829	+	Frame_Shift_Del	DEL	GCTCCCTTTTTTCATT	-	-													caacaggactgaccaaactgGctcccttttttcatttcttc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220195829	-	-	220195814	7	5	151	1	0	1	0	1	0	0	0	0	5233	1194	42	0	3644	0	EPRS	1	220195814	Frame_Shift_Del	DEL	GCTCCCTTTTTTCATT	TCGA-50-5049-01A-01D-1625-08	2402745	220195814	29054807	172	129659											
EPRS	2058	broad.mit.edu	37	chr1	220195837	220195837	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttttttcatttcttcccAcatttgtagattcttctcaa	2	12	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220195837	G	G	220195837	3	3	151	1	0	0	0	0	1	0	0	0	5233	159	6	5	3667	5	EPRS	1	220195837	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	23	220195837	29054784	173	129660											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220363696	220363696	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttagcagaggagcgtcaatCagcaacactggacacacctt	10	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220363696	T	T	220363696	1	4	151	0	1	0	0	0	0	0	0	0	13044	841	29	4		4	RAB3GAP2	1	220363696	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	167859	220363696	28886925	174	129661											
HLX	3142	broad.mit.edu	37	chr1	221057723	221057723	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagcgagagcagcgactccGagtccctggacatggccccc	13	15	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221057723	T	T	221057723	4	4	151	1	0	0	0	0	0	1	0	0	7283	1059	37	3	1158	3	HLX	1	221057723	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	694027	221057723	28192898	175	129662											
C1orf95	375057	broad.mit.edu	37	chr1	226784685	226784685	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatggtcatccttgccagtGagtagctgttggtgctgcgc	13	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226784685	T	T	226784685	1	4	151	0	1	0	0	0	0	0	0	0	2094	1305	45	3		3	C1orf95	1	226784685	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	5726962	226784685	22465936	176	129663											
CABC1	56997	broad.mit.edu	37	chr1	227152708	227152708	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctccctgcagggtcaggAtaaacatgaagaatattttg	10	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227152708	T	T	227152708	3	4	151	1	0	0	0	0	1	0	0	0	2553	333	12	5	191	5	CABC1	1	227152708	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	368023	227152708	22097913	177	129664											
RHOU	58480	broad.mit.edu	37	chr1	228871772	228871772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagctggccggggggccgGggccgggggcgcgtggccgc	25	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228871772	T	T	228871772	1	4	151	0	1	0	0	0	0	0	0	0	13454	1247	43	2		2	RHOU	1	228871772	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1719064	228871772	20378849	178	129665											
ABCB10	23456	broad.mit.edu	37	chr1	229657378	229657378	+	Frame_Shift_Del	DEL	C	-	-													atcgcaatccgctgtttctgCccacctgacaaagacaacat							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	229657378	-	-	229657378	7	5	151	1	0	1	0	1	0	0	0	0	41	726	26	0	317	0	ABCB10	1	229657378	Frame_Shift_Del	DEL	C	TCGA-50-5049-01A-01D-1625-08	785606	229657378	19593243	179	129666											
TAF5L	27097	broad.mit.edu	37	chr1	229730202	229730202	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagtaagtgttcctgatgtCccagacgcgcaccgagttgt	12	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229730202	T	T	229730202	3	4	151	1	0	0	0	0	1	0	0	0	15648	855	30	4	161	4	TAF5L	1	229730202	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	72824	229730202	19520419	180	129667											
PGBD5	79605	broad.mit.edu	37	chr1	230492710	230492710	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaggaagggctggaccttgTagagcccgtgcgtggtctgg	18	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230492710	C	C	230492710	3	2	151	1	0	0	0	0	1	0	0	0	11879	1638	57	5	909	5	PGBD5	1	230492710	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	762508	230492710	18757911	181	129668											
LYST	1130	broad.mit.edu	37	chr1	235840334	235840335	+	Intron	DNP	CC	AT	AT													gacctaggagtaaccactggCcgaatgcgctgttagagcac					rs112755993		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	235840335	AT	AT	235840334	1	1	151	0	1	0	0	0	0	0	0	0	9216	754	26	3		3	LYST	1	235840334	Intron	DNP	CC	TCGA-50-5049-01A-01D-1625-08	5347624	235840334	13410287	182	129669											
LYST	1130	broad.mit.edu	37	chr1	235969785	235969785	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttaacagtcttccgtctcTttggataagcttctttgagg	10	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235969785	C	C	235969785	3	2	151	1	0	0	0	0	1	0	0	0	9216	1609	56	5	8946	5	LYST	1	235969785	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	129451	235969785	13280836	183	129670											
NID1	4811	broad.mit.edu	37	chr1	236180456	236180456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaacttacccacacacGttccctcatctgaaaactgg	7	13	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236180456	T	T	236180456	3	4	151	1	0	0	0	0	1	0	0	0	10509	1145	40	3	1541	3	NID1	1	236180456	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	210671	236180456	13070165	184	129671											
ACTN2	88	broad.mit.edu	37	chr1	236924413	236924413	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttcatgactagagagacGgctgacaccgacactgccga	11	12	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236924413	T	T	236924413	2	4	151	1	0	0	0	0	0	0	0	1	205	1103	39	1		1	ACTN2	1	236924413	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	743957	236924413	12326208	185	129672											
ACTN2	88	broad.mit.edu	37	chr1	236924444	236924444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgccgagcaggtcatcGcctccttccggatcctggct	10	16	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236924444	T	T	236924444	3	4	151	1	0	0	0	0	1	0	0	0	205	1087	38	3	2575	3	ACTN2	1	236924444	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	31	236924444	12326177	186	129673											
MTR	4548	broad.mit.edu	37	chr1	236987547	236987548	+	Intron	DNP	GG	AT	AT													tttcaagggggtcacacatgGggagataaaaataacataag							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	236987548	AT	AT	236987547	1	1	151	0	1	0	0	0	0	0	0	0	10052	1247	43	4		4	MTR	1	236987547	Intron	DNP	GG	TCGA-50-5049-01A-01D-1625-08	63103	236987547	12263074	187	129674											
RYR2	6262	broad.mit.edu	37	chr1	237659966	237659966	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgaaggatattctccctAccctggagggggcgaagagt	13	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237659966	G	G	237659966	3	3	151	1	0	0	0	0	1	0	0	0	13880	391	14	5	2195	5	RYR2	1	237659966	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	672419	237659966	11590655	188	129675											
RYR2	6262	broad.mit.edu	37	chr1	237663962	237663962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggctctgaagctgattcTctgagataaaaaaatacatg	8	6	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237663962	A	A	237663962	1	1	151	0	1	0	0	0	0	0	0	0	13880	1566	54	5		5	RYR2	1	237663962	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	3996	237663962	11586659	189	129676											
RYR2	6262	broad.mit.edu	37	chr1	237711850	237711850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacataatgtgtgggcgcGggatcgaatccggcagggct	16	9	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237711850	T	T	237711850	3	4	151	1	0	0	0	0	1	0	0	0	13880	1116	39	1	3128	1	RYR2	1	237711850	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	47888	237711850	11538771	190	129677											
RYR2	6262	broad.mit.edu	37	chr1	237730037	237730038	+	Missense_Mutation	DNP	GG	TT	TT													gtcaaccggatcaggagcttGgctcagatgaacgtgccttt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	237730038	TT	TT	237730037	3	4	151	1	0	0	0	0	1	0	0	0	13880	1348	47	2	3495	2	RYR2	1	237730037	Missense_Mutation	DNP	GG	TCGA-50-5049-01A-01D-1625-08	18187	237730037	11520584	191	129678											
RYR2	6262	broad.mit.edu	37	chr1	237777524	237777524	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtacatgcctggtttgctgcGtgctggctactatgacctgc	12	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237777524	C	C	237777524	3	2	151	1	0	0	0	0	1	0	0	0	13880	1145	40	4	5242	4	RYR2	1	237777524	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	47487	237777524	11473097	192	129679											
RYR2	6262	broad.mit.edu	37	chr1	237806598	237806598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattgatgtcacaaagttGttctaatgtttttttttccc	5	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237806598	T	T	237806598	1	4	151	0	1	0	0	0	0	0	0	0	13880	1392	48	3		3	RYR2	1	237806598	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	29074	237806598	11444023	193	129680											
RYR2	6262	broad.mit.edu	37	chr1	237811774	237811774	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaacctgacatgtctgCggggttttgcccagatcaca	13	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237811774	T	T	237811774	3	4	151	1	0	0	0	0	1	0	0	0	13880	768	27	4	7567	4	RYR2	1	237811774	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5176	237811774	11438847	194	129681											
RYR2	6262	broad.mit.edu	37	chr1	237947550	237947550	+	Frame_Shift_Del	DEL	G	-	-													tatttgacgtggtcaacgaaGgcggagagaaagagaagatg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	237947550	-	-	237947550	7	5	151	1	0	1	0	1	0	0	0	0	13880	1000	35	0	12896	0	RYR2	1	237947550	Frame_Shift_Del	DEL	G	TCGA-50-5049-01A-01D-1625-08	135776	237947550	11303071	195	129682											
ZP4	57829	broad.mit.edu	37	chr1	238050766	238050766	+	Frame_Shift_Del	DEL	G	-	-													acacgcactgtcattcctaaGggccaagcgcacagaatcca							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	238050766	-	-	238050766	7	5	151	1	0	1	0	1	0	0	0	0	18347	1000	35	0	1005	0	ZP4	1	238050766	Frame_Shift_Del	DEL	G	TCGA-50-5049-01A-01D-1625-08	103216	238050766	11199855	196	129683											
CHRM3	1131	broad.mit.edu	37	chr1	240071400	240071400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttggaaagagaactgtgCctccgggagagtgcttcatt	13	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240071400	A	A	240071400	3	1	151	1	0	0	0	0	1	0	0	0	3409	739	26	3	651	3	CHRM3	1	240071400	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2020634	240071400	9179221	197	129684											
FMN2	56776	broad.mit.edu	37	chr1	240306506	240306506	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaccactgcccaccatgcCcatggcaaaaatggagttat	9	12	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240306506	T	T	240306506	1	4	151	0	1	0	0	0	0	0	0	0	6008	638	22	4		4	FMN2	1	240306506	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	235106	240306506	8944115	198	129685											
RGS7	6000	broad.mit.edu	37	chr1	240975308	240975309	+	Missense_Mutation	DNP	CC	AA	AA													atgcctcgtccatgccaaaaCcccatcgttttaccctctgc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	240975309	AA	AA	240975308	3	1	151	1	0	0	0	0	1	0	0	0	13419	507	18	3	491	3	RGS7	1	240975308	Missense_Mutation	DNP	CC	TCGA-50-5049-01A-01D-1625-08	668802	240975308	8275313	199	129686											
KMO	8564	broad.mit.edu	37	chr1	241725627	241725627	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactattccacctaagaacGgagatgtaagtccttgccct	8	11	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241725627	T	T	241725627	4	4	151	1	0	0	0	0	0	1	0	0	8495	1117	39	1	636	1	KMO	1	241725627	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	750319	241725627	7524994	200	129687											
WDR64	128025	broad.mit.edu	37	chr1	241958616	241958616	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagtttctaggagtagagGggtcacagaacagtagagaa	15	4	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241958616	A	A	241958616	1	1	151	0	1	0	0	0	0	0	0	0	17442	1247	43	4		4	WDR64	1	241958616	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	232989	241958616	7292005	201	129688											
PLD5	200150	broad.mit.edu	37	chr1	242253272	242253272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttggctgtaaggttttggCatacggtgaataccagtccc	13	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242253272	A	A	242253272	3	1	151	1	0	0	0	0	1	0	0	0	12144	710	25	3	119	3	PLD5	1	242253272	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	294656	242253272	6997349	202	129689											
ZNF670	93474	broad.mit.edu	37	chr1	247207046	247207046	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagcccttttagcgttcatCctaaaacaggtcgcatttct	7	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247207046	T	T	247207046	1	4	151	0	1	0	0	0	0	0	0	0	18204	870	30	4		4	ZNF670	1	247207046	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	4953774	247207046	2043575	203	129690											
VN1R5	317705	broad.mit.edu	37	chr1	247419455	247419455	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttctccacagatatcCtttgctttaattttccttct	3	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247419455	A	A	247419455	3	1	151	1	0	0	0	0	1	0	0	0	17308	681	24	2	84	2	VN1R5	1	247419455	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	212409	247419455	1831166	204	129691											
NLRP3	114548	broad.mit.edu	37	chr1	247588721	247588721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgagatcaatctctccaCcagaatggaccacatggttt	8	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588721	A	A	247588721	3	1	151	1	0	0	0	0	1	0	0	0	10573	507	18	3	1986	3	NLRP3	1	247588721	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	169266	247588721	1661900	205	129692											
NLRP3	114548	broad.mit.edu	37	chr1	247608039	247608039	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcctgcgaaagctgagccTgggcaacaatgacctgggcg	15	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247608039	G	G	247608039	3	3	151	1	0	0	0	0	1	0	0	0	10573	1580	55	5	2957	5	NLRP3	1	247608039	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	19318	247608039	1642582	206	129693											
OR2C3	81472	broad.mit.edu	37	chr1	247694964	247694964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aataagtgggttcagcgcagGagtgactacggtgtagaaca	14	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247694964	T	T	247694964	3	4	151	1	0	0	0	0	1	0	0	0	11087	1174	41	3	116	3	OR2C3	1	247694964	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	86925	247694964	1555657	207	129694											
OR2G3	81469	broad.mit.edu	37	chr1	247768905	247768905	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggatgggattgggcaatgaGagttccctaatggatttcat	14	5	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247768905	T	T	247768905	3	4	151	1	0	0	0	0	1	0	0	0	11093	933	33	3	20	3	OR2G3	1	247768905	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	73941	247768905	1481716	208	129695											
OR2W3	343171	broad.mit.edu	37	chr1	248059679	248059679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtacatgcagccaggagCcagttcttcccaggaccagg	11	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059679	A	A	248059679	3	1	151	1	0	0	0	0	1	0	0	0	11127	739	26	3	793	3	OR2W3	1	248059679	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	290774	248059679	1190942	209	129696											
OR2T8	343172	broad.mit.edu	37	chr1	248085108	248085109	+	Frame_Shift_Ins	INS	-	A	A													atatgagacccaaatcccacINSaggtccactaaccacgacaa					rs4625315	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248085109	A	A	248085108	7	5	151	1	0	1	1	0	0	0	0	0	11124	477	17	0	791	0	OR2T8	1	248085108	Frame_Shift_Ins	INS	-	TCGA-50-5049-01A-01D-1625-08	25429	248085108	1165513	210	129697											
OR2AK2	391191	broad.mit.edu	37	chr1	248129102	248129102	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgagcaagaagatctgcTgcctcatggttgcatgtgca	11	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248129102	C	C	248129102	3	2	151	1	0	0	0	0	1	0	0	0	11080	1580	55	5	471	5	OR2AK2	1	248129102	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	43994	248129102	1121519	211	129698											
OR2L2	26246	broad.mit.edu	37	chr1	248202598	248202598	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattattacatgcccagtGtgtcaaacagaagttaatct	6	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248202598	T	T	248202598	1	4	151	0	1	0	0	0	0	0	0	0	11101	1392	48	3		3	OR2L2	1	248202598	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	73496	248202598	1048023	212	129699											
OR2M5	127059	broad.mit.edu	37	chr1	248308455	248308455	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacatattcatcatggcAtgggagaatcagaccttcaa	7	8	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248308455	G	G	248308455	2	3	151	1	0	0	0	0	0	0	0	1	11107	204	8	5		5	OR2M5	1	248308455	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	105857	248308455	942166	213	129700											
OR2M2	391194	broad.mit.edu	37	chr1	248344004	248344004	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcgttgcaaagctttcacGacctgttcctctcacctcat	7	14	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248344004	T	T	248344004	2	4	151	1	0	0	0	0	0	0	0	1	11104	1045	37	3		3	OR2M2	1	248344004	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	35549	248344004	906617	214	129701											
OR2T12	127064	broad.mit.edu	37	chr1	248458220	248458220	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcatgagcagaacagcagCgaggatgagaccataggagg	16	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248458220	T	T	248458220	3	4	151	1	0	0	0	0	1	0	0	0	11113	768	27	4	304	4	OR2T12	1	248458220	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	114216	248458220	792401	215	129702											
OR2T3	343173	broad.mit.edu	37	chr1	248637465	248637465	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcccgagttcctaccacAcagctgagcaggacatgatg	10	13	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248637465	T	T	248637465	3	4	151	1	0	0	0	0	1	0	0	0	11117	159	6	5	816	5	OR2T3	1	248637465	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	179245	248637465	613156	216	129703											
OR2T10	127069	broad.mit.edu	37	chr1	248757048	248757048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaaaaagtcaccacccaGggtctggttggccagccgca	12	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248757048	T	T	248757048	3	4	151	1	0	0	0	0	1	0	0	0	11111	991	35	2	919	2	OR2T10	1	248757048	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	119583	248757048	493573	217	129704											
C2orf48	348738	broad.mit.edu	37	chr2	10350553	10350553	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagagtcccttccagacaGggacacccctggagcgaccc	10	18	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10350553	A	A	10350553	3	1	151	1	0	0	0	0	1	0	0	0	2192	1000	35	4	320	4	C2orf48	2	10350553	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08		10350553	232848820	218	129705											
C2orf48	348738	broad.mit.edu	37	chr2	10350596	10350596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagaatgaagttatctgGgtgggaactcaccaagaatg	11	6	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10350596	T	T	10350596	3	4	151	1	0	0	0	0	1	0	0	0	2192	1232	43	2	363	2	C2orf48	2	10350596	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	43	10350596	232848777	219	129706											
GREB1	9687	broad.mit.edu	37	chr2	11742500	11742501	+	Intron	INS	-	TT	TT													ccgtccctgcgaatgcagtgINSttggagtgaccgacgctctt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	11742501	TT	TT	11742500	6	5	151	0	1	1	1	0	0	0	0	0	6826	1392	48	0		0	GREB1	2	11742500	Intron	INS	-	TCGA-50-5049-01A-01D-1625-08	1391904	11742500	231456873	220	129707											
NTSR2	23620	broad.mit.edu	37	chr2	11802408	11802408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatggggcagcgccagggcCctgcggccctcgccatctgg	15	16	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11802408	A	A	11802408	1	1	151	0	1	0	0	0	0	0	0	0	10806	638	22	2		2	NTSR2	2	11802408	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	59908	11802408	231396965	221	129708											
NBAS	51594	broad.mit.edu	37	chr2	15358968	15358968	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggagcttgctgtcctcctCagtcaggtgaaatgattgcc	12	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15358968	G	G	15358968	3	3	151	1	0	0	0	0	1	0	0	0	10280	835	29	4	774	4	NBAS	2	15358968	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3556560	15358968	227840405	222	129709											
FKBP1B	2281	broad.mit.edu	37	chr2	24276809	24276809	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggccaaacgtgtgtggtGcactacacaggtaagtctca	12	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24276809	A	A	24276809	2	1	151	1	0	0	0	0	0	0	0	1	5964	1306	46	4		4	FKBP1B	2	24276809	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	8917841	24276809	218922564	223	129710											
ITSN2	50618	broad.mit.edu	37	chr2	24444073	24444073	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaaggacgctgctaacttCtgcagagcagcatgcgtacg	11	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24444073	G	G	24444073	1	3	151	0	1	0	0	0	0	0	0	0	7997	928	32	4		4	ITSN2	2	24444073	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	167264	24444073	218755300	224	129711											
C2orf39	92749	broad.mit.edu	37	chr2	26647036	26647036	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtttgggcagtgcctaGtacctgggtcttatattcta	12	7	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26647036	C	C	26647036	1	2	151	0	1	0	0	0	0	0	0	0	2186	1044	36	4		4	C2orf39	2	26647036	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2202963	26647036	216552337	225	129712											
CAD	790	broad.mit.edu	37	chr2	27457199	27457199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgccttcatccaagtaGgcagggaagctggagggaaa	13	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27457199	T	T	27457199	1	4	151	0	1	0	0	0	0	0	0	0	2591	1015	35	2		2	CAD	2	27457199	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	810163	27457199	215742174	226	129713											
IFT172	26160	broad.mit.edu	37	chr2	27700260	27700260	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgggaggtgtactgtcaGttcaaggtgactaccacttt	12	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27700260	A	A	27700260	1	1	151	0	1	0	0	0	0	0	0	0	7627	1044	36	4		4	IFT172	2	27700260	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	243061	27700260	215499113	227	129714											
PLB1	151056	broad.mit.edu	37	chr2	28755041	28755041	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaatgcaagccagtgttacCtgtgcccctctgctcaacag	9	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28755041	T	T	28755041	2	4	151	1	0	0	0	0	0	0	0	1	12119	680	24	4		4	PLB1	2	28755041	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1054781	28755041	214444332	228	129715											
ALK	238	broad.mit.edu	37	chr2	29474156	29474156	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggcacaagaggagaggcaGtcactcatgtggccaggccc	15	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29474156	C	C	29474156	1	2	151	0	1	0	0	0	0	0	0	0	525	1044	36	4		4	ALK	2	29474156	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	719115	29474156	213725217	229	129716											
GALNT14	79623	broad.mit.edu	37	chr2	31165143	31165143	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaccaagctttgtcgatcacGaagagccctccagctatgat	8	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31165143	T	T	31165143	3	4	151	1	0	0	0	0	1	0	0	0	6274	1049	37	3	831	3	GALNT14	2	31165143	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1690987	31165143	212034230	230	129717											
GALNT14	79623	broad.mit.edu	37	chr2	31167694	31167694	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatccagtggtgatggtctgCccacccctgcacagactctt	10	14	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31167694	G	G	31167694	1	3	151	0	1	0	0	0	0	0	0	0	6274	754	26	4		4	GALNT14	2	31167694	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2551	31167694	212031679	231	129718											
GALNT14	79623	broad.mit.edu	37	chr2	31215704	31215704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggagaaggaggaagtacCtcagatggcgagtgtccggg	19	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31215704	A	A	31215704	3	1	151	1	0	0	0	0	1	0	0	0	6274	695	24	2	1415	2	GALNT14	2	31215704	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	48010	31215704	211983669	232	129719											
EHD3	30845	broad.mit.edu	37	chr2	31489370	31489370	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggcgctaatgccaagaagGagatggtgcgctccaagctg	14	10	0	2	rs35925176		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31489370	T	T	31489370	4	4	151	1	0	0	0	0	0	1	0	0	5019	1175	41	3	1430	3	EHD3	2	31489370	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	273666	31489370	211710003	233	129720											
VIT	5212	broad.mit.edu	37	chr2	36994405	36994405	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catccccagaccacaatcagTgggccacaggagccaggaga	11	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36994405	A	A	36994405	3	1	151	1	0	0	0	0	1	0	0	0	17298	1696	59	5	803	5	VIT	2	36994405	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	5505035	36994405	206204968	234	129721											
PRKD3	23683	broad.mit.edu	37	chr2	37543459	37543459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaatggtaacactctccCgtgtgaggccaatttgcagt	9	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37543459	A	A	37543459	3	1	151	1	0	0	0	0	1	0	0	0	12626	652	23	1	2535	1	PRKD3	2	37543459	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	549054	37543459	205655914	235	129722											
TMEM178	130733	broad.mit.edu	37	chr2	39944434	39944434	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcgagcgactcctgagGggaacagcgcggagttcagg	17	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39944434	T	T	39944434	1	4	151	0	1	0	0	0	0	0	0	0	16218	1247	43	2		2	TMEM178	2	39944434	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	2400975	39944434	203254939	236	129723											
SLC8A1	6546	broad.mit.edu	37	chr2	40655842	40655842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaaaatagttacagtggCagtggagggagatccgaggc	14	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40655842	A	A	40655842	3	1	151	1	0	0	0	0	1	0	0	0	14820	710	25	3	1490	3	SLC8A1	2	40655842	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	711408	40655842	202543531	237	129724											
ABCG8	64241	broad.mit.edu	37	chr2	44099139	44099139	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaccagcattgacaggcGcagcagagagcaggaattgg	14	10	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44099139	A	A	44099139	3	1	151	1	0	0	0	0	1	0	0	0	72	1087	38	4	1015	4	ABCG8	2	44099139	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3443297	44099139	199100234	238	129725											
SIX3	6496	broad.mit.edu	37	chr2	45169936	45169936	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctacaggacccctacccCaaccccagcaagaaacgcga	6	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45169936	A	A	45169936	2	1	151	1	0	0	0	0	0	0	0	1	14461	581	21	2		2	SIX3	2	45169936	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1070797	45169936	198029437	239	129726											
SRBD1	55133	broad.mit.edu	37	chr2	45646961	45646961	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaacagatgttaatatccaCtcccacaaagctgacacatt	5	11	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45646961	G	G	45646961	3	3	151	1	0	0	0	0	1	0	0	0	15251	565	20	4	885	4	SRBD1	2	45646961	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	477025	45646961	197552412	240	129727											
FSHR	2492	broad.mit.edu	37	chr2	49247236	49247236	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcttacatttcatgtaaTttgggaaggttggagaacac	10	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49247236	A	A	49247236	3	1	151	1	0	0	0	0	1	0	0	0	6133	1490	52	5	1831	5	FSHR	2	49247236	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	3600275	49247236	193952137	241	129728											
CCDC88A	55704	broad.mit.edu	37	chr2	55555429	55555429	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccaagaaaatcacttaCtgttttaagttcttggcgca	6	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55555429	A	A	55555429	5	1	151	1	0	0	0	0	0	0	1	0	2891	579	20	3	2681	3	CCDC88A	2	55555429	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	6308193	55555429	187643944	242	129729											
CCDC104	112942	broad.mit.edu	37	chr2	55756198	55756198	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttttgactattctaatatGgtcttaaatgtagctgtctc	7	6	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55756198	C	C	55756198	1	2	151	0	1	0	0	0	0	0	0	0	2765	1363	47	4		4	CCDC104	2	55756198	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	200769	55756198	187443175	243	129730											
USP34	9736	broad.mit.edu	37	chr2	61505300	61505300	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgattatcttaacacttacCtgtccttcccttgaaaattt	3	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61505300	G	G	61505300	3	3	151	1	0	0	0	0	1	0	0	0	17192	695	24	4	5367	4	USP34	2	61505300	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5749102	61505300	181694073	244	129731											
FAM161A	84140	broad.mit.edu	37	chr2	62054330	62054330	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttctttgaaacaaactcatCagatattcctagtgctttta	4	8	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62054330	A	A	62054330	3	1	151	1	0	0	0	0	1	0	0	0	5518	826	29	3	243	3	FAM161A	2	62054330	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	549030	62054330	181145043	245	129732											
FAM161A	84140	broad.mit.edu	37	chr2	62080943	62080943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaccggacagccctcagCctgcacccagcccatgcgag	12	17	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62080943	A	A	62080943	1	1	151	0	1	0	0	0	0	0	0	0	5518	754	26	3		3	FAM161A	2	62080943	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	26613	62080943	181118430	246	129733											
ARHGAP25	9938	broad.mit.edu	37	chr2	69049695	69049695	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaattctggtcgccttcctCagaggctaaggcaggggaag	14	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69049695	A	A	69049695	4	1	151	1	0	0	0	0	0	1	0	0	876	838	29	3	1502	3	ARHGAP25	2	69049695	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6968752	69049695	174149678	247	129734											
BMP10	27302	broad.mit.edu	37	chr2	69098246	69098246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagttccaacatgtactctGgtgggtccaccttggctgaa	11	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69098246	T	T	69098246	3	4	151	1	0	0	0	0	1	0	0	0	1463	1348	47	2	1037	2	BMP10	2	69098246	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	48551	69098246	174101127	248	129735											
AAK1	22848	broad.mit.edu	37	chr2	69783969	69783969	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccattttaaacagtcCcaagtccaaggggcagcctt	8	13	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69783969	T	T	69783969	1	4	151	0	1	0	0	0	0	0	0	0	16	638	22	4		4	AAK1	2	69783969	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	685723	69783969	173415404	249	129736											
DYSF	8291	broad.mit.edu	37	chr2	71730294	71730294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggggtctggcagaagagCcagggtgccttaggctagtt	17	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71730294	A	A	71730294	1	1	151	0	1	0	0	0	0	0	0	0	4899	754	26	3		3	DYSF	2	71730294	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1946325	71730294	171469079	250	129737											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73315919	73315919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagctcgcaggaagagaggCcccatttcctggccccaggc	12	14	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73315919	A	A	73315919	1	1	151	0	1	0	0	0	0	0	0	0	13005	754	26	3		3	RAB11FIP5	2	73315919	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1585625	73315919	169883454	251	129738											
DCTN1	1639	broad.mit.edu	37	chr2	74592169	74592169	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggagagaagacaatctcctCtgtgctagtgctgcctattc	10	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74592169	A	A	74592169	1	1	151	0	1	0	0	0	0	0	0	0	4339	928	32	3		3	DCTN1	2	74592169	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1276250	74592169	168607204	252	129739											
LOXL3	84695	broad.mit.edu	37	chr2	74763528	74763528	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggtcacagactgtgcccCatgtgctggccttcaggact	12	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74763528	A	A	74763528	3	1	151	1	0	0	0	0	1	0	0	0	8988	595	21	2	1314	2	LOXL3	2	74763528	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	171359	74763528	168435845	253	129740											
DOK1	1796	broad.mit.edu	37	chr2	74782721	74782721	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggcagctggactctggCgcctaccgataacccaccta	10	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74782721	T	T	74782721	3	4	151	1	0	0	0	0	1	0	0	0	4736	768	27	4	390	4	DOK1	2	74782721	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	19193	74782721	168416652	254	129741											
LRRTM4	80059	broad.mit.edu	37	chr2	77748805	77748805	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcacttacccatcctttgtCatccaaaaacgtttcccccc	2	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77748805	T	T	77748805	1	4	151	0	1	0	0	0	0	0	0	0	9129	841	29	4		4	LRRTM4	2	77748805	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	2966084	77748805	165450568	255	129742											
REG3G	130120	broad.mit.edu	37	chr2	79253237	79253237	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatgctgcctcccatggcCctgcccagtgtgtcctggat	10	15	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79253237	A	A	79253237	2	1	151	1	0	0	0	0	0	0	0	1	13321	610	22	2		2	REG3G	2	79253237	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1504432	79253237	163946136	256	129743											
REG1B	5968	broad.mit.edu	37	chr2	79314050	79314050	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggcagctctgtctgggacTcctggcctggggaaaaaaaa	13	9	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79314050	G	G	79314050	3	3	151	1	0	0	0	0	1	0	0	0	13319	1551	54	5	445	5	REG1B	2	79314050	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	60813	79314050	163885323	257	129744											
REG1A	5967	broad.mit.edu	37	chr2	79348008	79348008	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctcagaccagctcataCttcatgctgatctcctgcct	7	14	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79348008	A	A	79348008	4	1	151	1	0	0	0	0	0	1	0	0	13318	576	20	3	23	3	REG1A	2	79348008	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	33958	79348008	163851365	258	129745											
REG1A	5967	broad.mit.edu	37	chr2	79348676	79348676	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagcctcctttaattgtctCttctttttcaggccaagagg	8	10	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79348676	A	A	79348676	1	1	151	0	1	0	0	0	0	0	0	0	13318	928	32	3		3	REG1A	2	79348676	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	668	79348676	163850697	259	129746											
REG3A	5068	broad.mit.edu	37	chr2	79384330	79384330	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagttgcacaccaaacacaGgctgctgacttccctcctgc	8	15	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79384330	T	T	79384330	1	4	151	0	1	0	0	0	0	0	0	0	13320	1015	35	2		2	REG3A	2	79384330	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	35654	79384330	163815043	260	129747											
LRRTM1	347730	broad.mit.edu	37	chr2	80529463	80529463	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggctccctcaatgtggttCggtttgtaatcaacgtagta	11	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80529463	A	A	80529463	2	1	151	1	0	0	0	0	0	0	0	1	9126	871	31	3		3	LRRTM1	2	80529463	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1145133	80529463	162669910	261	129748											
RMND5A	64795	broad.mit.edu	37	chr2	87100602	87100602	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtacgttgtaacatgaCataatgtaatgtgaagataa	11	3	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87100602	T	T	87100602	1	4	151	0	1	0	0	0	0	0	0	0	13508	493	17	4		4	RMND5A	2	87100602	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	6571139	87100602	156098771	262	129749											
DUSP2	1844	broad.mit.edu	37	chr2	96809566	96809566	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagaggggcaccacctcagTgacacagcacctgggtctca	12	14	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96809566	C	C	96809566	3	2	151	1	0	0	0	0	1	0	0	0	4859	1696	59	5	7	5	DUSP2	2	96809566	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	9708964	96809566	146389807	263	129750											
ITPRIPL1	150771	broad.mit.edu	37	chr2	96992329	96992329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaatgtgagctagagaGcagataagtctggaagatga	16	3	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96992329	T	T	96992329	1	4	151	0	1	0	0	0	0	0	0	0	7994	986	34	3		3	ITPRIPL1	2	96992329	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	182763	96992329	146207044	264	129751											
ARID5A	10865	broad.mit.edu	37	chr2	97217799	97217799	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgcccgctgaacttcActggcaccccgggccccttg	10	18	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97217799	T	T	97217799	3	4	151	1	0	0	0	0	1	0	0	0	923	159	6	5	1560	5	ARID5A	2	97217799	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	225470	97217799	145981574	265	129752											
CNGA3	1261	broad.mit.edu	37	chr2	99008471	99008471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaggggaccatggccCccacgggagtgttccgggag	19	11	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99008471	A	A	99008471	1	1	151	0	1	0	0	0	0	0	0	0	3630	638	22	2		2	CNGA3	2	99008471	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1790672	99008471	144190902	266	129753											
MFSD9	84804	broad.mit.edu	37	chr2	103335231	103335231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgtgcaggtgagtatgCtggaatgcagcagcagtgcc	16	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103335231	A	A	103335231	3	1	151	1	0	0	0	0	1	0	0	0	9632	797	28	3	355	3	MFSD9	2	103335231	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4326760	103335231	139864142	267	129754											
RGPD3	653489	broad.mit.edu	37	chr2	107041516	107041516	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacatctgcaaatgtaaaAgtgctacttgtttggccaaa	8	8	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107041516	G	G	107041516	2	3	151	1	0	0	0	0	0	0	0	1	13395	59	3	5		5	RGPD3	2	107041516	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	3706285	107041516	136157857	268	129755											
SEPT10	151011	broad.mit.edu	37	chr2	110325410	110325410	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acattcattgcagcgttgacCttagcaatagtgtcatcatc	7	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110325410	T	T	110325410	2	4	151	1	0	0	0	0	0	0	0	1	14173	680	24	4		4	SEPT10	2	110325410	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	3283894	110325410	132873963	269	129756											
NPHP1	4867	broad.mit.edu	37	chr2	110881425	110881425	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggtctgctctgaaaggtcAaaaggttcatgaactccgtc	10	9	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110881425	T	T	110881425	3	4	151	1	0	0	0	0	1	0	0	0	10674	127	5	5	60	5	NPHP1	2	110881425	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	556015	110881425	132317948	270	129757											
FBLN7	129804	broad.mit.edu	37	chr2	112942952	112942952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcacaccctcacccagGcctccaagtgtggctgggct	13	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112942952	A	A	112942952	1	1	151	0	1	0	0	0	0	0	0	0	5758	1218	42	4		4	FBLN7	2	112942952	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2061527	112942952	130256421	271	129758											
CKAP2L	150468	broad.mit.edu	37	chr2	113522304	113522304	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcacgggagggcgggaCaacaggcaataggctctttg	16	9	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113522304	A	A	113522304	1	1	151	0	1	0	0	0	0	0	0	0	3474	493	17	3		3	CKAP2L	2	113522304	5'Flank	SNP	C	TCGA-50-5049-01A-01D-1625-08	579352	113522304	129677069	272	129759											
MYO7B	4648	broad.mit.edu	37	chr2	128351172	128351172	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcactgacgtgtggctgCggacagacaaagactggaaa	13	9	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128351172	T	T	128351172	3	4	151	1	0	0	0	0	1	0	0	0	10177	759	27	4	2263	4	MYO7B	2	128351172	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	14828868	128351172	114848201	273	129760											
CCDC74B	91409	broad.mit.edu	37	chr2	130897702	130897702	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggggcgtggtggggccTgtggcggtgccagactgccc	21	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130897702	A	A	130897702	1	1	151	0	1	0	0	0	0	0	0	0	2876	1595	55	5		5	CCDC74B	2	130897702	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	2546530	130897702	112301671	274	129761											
PLEKHB2	55041	broad.mit.edu	37	chr2	132109567	132109567	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatgccctccccaccagctCctggataatgacacctcact	6	17	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132109567	A	A	132109567	1	1	151	0	1	0	0	0	0	0	0	0	12160	870	30	3		3	PLEKHB2	2	132109567	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1211865	132109567	111089806	275	129762											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110251	132110251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggggtggccttgttgtgCgggatccatggaattgggca	19	6	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132110251	A	A	132110251	1	1	151	0	1	0	0	0	0	0	0	0	12160	783	27	3		3	PLEKHB2	2	132110251	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	684	132110251	111089122	276	129763											
LRP1B	53353	broad.mit.edu	37	chr2	141055644	141055644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccaggtttctggtcaagGtctgtccatgatttactctg	10	9	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141055644	T	T	141055644	1	4	151	0	1	0	0	0	0	0	0	0	9042	1276	44	3		3	LRP1B	2	141055644	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	8945393	141055644	102143729	277	129764											
LRP1B	53353	broad.mit.edu	37	chr2	141122263	141122263	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcatcagagttgtctcCacagtcgtcctctccatcac	7	15	5	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141122263	A	A	141122263	4	1	151	1	0	0	0	0	0	1	0	0	9042	603	21	2	2781	2	LRP1B	2	141122263	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	66619	141122263	102077110	278	129765											
LRP1B	53353	broad.mit.edu	37	chr2	141245256	141245256	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcggctagaatcgatccaaTagatgaattcttctctgtaa	8	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141245256	C	C	141245256	3	2	151	1	0	0	0	0	1	0	0	0	9042	1406	49	5	4762	5	LRP1B	2	141245256	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	122993	141245256	101954117	279	129766											
LRP1B	53353	broad.mit.edu	37	chr2	141607683	141607683	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttttacctcttgaaataaCagtttctaacccagttccgt	4	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141607683	G	G	141607683	3	3	151	1	0	0	0	0	1	0	0	0	9042	478	17	4	9124	4	LRP1B	2	141607683	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	362427	141607683	101591690	280	129767											
LRP1B	53353	broad.mit.edu	37	chr2	141625694	141625694	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgtccacactatccttttCtcaaagtggtccacagttag	6	12	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141625694	A	A	141625694	3	1	151	1	0	0	0	0	1	0	0	0	9042	912	32	3	9755	3	LRP1B	2	141625694	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	18011	141625694	101573679	281	129768											
GALNT13	114805	broad.mit.edu	37	chr2	155307078	155307078	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatgaagatcatgtcctccAagccatgaaagtgtctacgc	8	11	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155307078	T	T	155307078	1	4	151	0	1	0	0	0	0	0	0	0	6273	145	5	5		5	GALNT13	2	155307078	3'UTR	SNP	A	TCGA-50-5049-01A-01D-1625-08	13681384	155307078	87892295	282	129769											
GPD2	2820	broad.mit.edu	37	chr2	157436299	157436299	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaactcaatgaatttttgcAggtgagttgtggtgaaagga	13	3	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157436299	T	T	157436299	3	4	151	1	0	0	0	0	1	0	0	0	6671	202	7	5	2115	5	GPD2	2	157436299	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	2129221	157436299	85763074	283	129770											
FAP	2191	broad.mit.edu	37	chr2	163030285	163030285	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagacccatgaatctctctGtgtagacagacgctataaaa	9	9	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163030285	A	A	163030285	3	1	151	1	0	0	0	0	1	0	0	0	5730	1377	48	4	316	4	FAP	2	163030285	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	5593986	163030285	80169088	284	129771											
TTC21B	79809	broad.mit.edu	37	chr2	166781001	166781001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgcttaatttatttaCgcttgtttttatcaacatca	4	8	2	0	rs112985400		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166781001	A	A	166781001	1	1	151	0	1	0	0	0	0	0	0	0	16814	551	19	3		3	TTC21B	2	166781001	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3750716	166781001	76418372	285	129772											
XIRP2	129446	broad.mit.edu	37	chr2	168102148	168102148	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtattgaccatatacaaggtGgcaatgtaaagacaagtaga	10	5	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168102148	A	A	168102148	3	1	151	1	0	0	0	0	1	0	0	0	17557	1348	47	4	4276	4	XIRP2	2	168102148	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1321147	168102148	75097225	286	129773											
XIRP2	129446	broad.mit.edu	37	chr2	168103039	168103039	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaagtaataggtggtgatGtcaaacgtaccattcataat	9	5	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168103039	A	A	168103039	3	1	151	1	0	0	0	0	1	0	0	0	17557	1377	48	4	5167	4	XIRP2	2	168103039	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	891	168103039	75096334	287	129774											
ABCB11	8647	broad.mit.edu	37	chr2	169791994	169791994	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataactcctttcgtgacaTttcagtggctgcctggatta	8	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169791994	A	A	169791994	1	1	151	0	1	0	0	0	0	0	0	0	42	1508	52	5		5	ABCB11	2	169791994	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1688955	169791994	73407379	288	129775											
MYO3B	140469	broad.mit.edu	37	chr2	171034898	171034898	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccctggctggtgggcagtgGagggggatgacagccactct	18	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171034898	T	T	171034898	1	4	151	0	1	0	0	0	0	0	0	0	10171	1189	41	3		3	MYO3B	2	171034898	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1242904	171034898	72164475	289	129776											
TLK1	9874	broad.mit.edu	37	chr2	171910294	171910294	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaaatcatctatacgtcCctccttcttttccaggtcct	5	14	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171910294	A	A	171910294	4	1	151	1	0	0	0	0	0	1	0	0	16066	632	22	2	1647	2	TLK1	2	171910294	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	875396	171910294	71289079	290	129777											
OLA1	29789	broad.mit.edu	37	chr2	175006616	175006616	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctagtttatctataatGggcccaatcatttcctcatc	4	10	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175006616	A	A	175006616	2	1	151	1	0	0	0	0	0	0	0	1	10945	1335	47	4		4	OLA1	2	175006616	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3096322	175006616	68192757	291	129778											
TTN	7273	broad.mit.edu	37	chr2	179455492	179455492	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagcgataggtgttttgttGaccctcacccatttgccagt	9	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179455492	T	T	179455492	2	4	151	1	0	0	0	0	0	0	0	1	16861	1277	45	3		3	TTN	2	179455492	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	4448876	179455492	63743881	292	129779											
TTN	7273	broad.mit.edu	37	chr2	179528470	179528470	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaaaattacattcagaaGttatgaagaccactggaaaa	7	6	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179528470	T	T	179528470	1	4	151	0	1	0	0	0	0	0	0	0	16861	1044	36	3		3	TTN	2	179528470	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	72978	179528470	63670903	293	129780											
TTN	7273	broad.mit.edu	37	chr2	179577161	179577161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggattgccgatttttcaGtcgtagttatattacacctc	7	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179577161	T	T	179577161	3	4	151	1	0	0	0	0	1	0	0	0	16861	1029	36	3	77113	3	TTN	2	179577161	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	48691	179577161	63622212	294	129781											
TTN	7273	broad.mit.edu	37	chr2	179585355	179585355	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcagaacctttaagagctcCtactggagaaggcttctggg	11	9	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179585355	G	G	179585355	3	3	151	1	0	0	0	0	1	0	0	0	16861	690	24	4	81527	4	TTN	2	179585355	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	8194	179585355	63614018	295	129782											
TTN	7273	broad.mit.edu	37	chr2	179616755	179616755	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaatgttcagattccccctCagagaataattctggaaaaa	7	8	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179616755	G	G	179616755	3	3	151	1	0	0	0	0	1	0	0	0	16861	835	29	4	99925	4	TTN	2	179616755	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	31400	179616755	63582618	296	129783											
CCDC141	285025	broad.mit.edu	37	chr2	179742780	179742780	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccactgcttctcagccgagtCagaacaatgcttggctttag	9	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179742780	A	A	179742780	3	1	151	1	0	0	0	0	1	0	0	0	2801	826	29	3	2590	3	CCDC141	2	179742780	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	126025	179742780	63456593	297	129784											
PPP1R1C	151242	broad.mit.edu	37	chr2	182827155	182827155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttggacacctggacagaGcccaggaacaggtagttggt	14	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182827155	T	T	182827155	1	4	151	0	1	0	0	0	0	0	0	0	12470	986	34	3		3	PPP1R1C	2	182827155	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3084375	182827155	60372218	298	129785											
DNAJC10	54431	broad.mit.edu	37	chr2	183619847	183619847	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagaggtatttcagattataGactatgtgactagaaatttg	9	3	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183619847	T	T	183619847	1	4	151	0	1	0	0	0	0	0	0	0	4669	957	33	3		3	DNAJC10	2	183619847	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	792692	183619847	59579526	299	129786											
ZNF804A	91752	broad.mit.edu	37	chr2	185801377	185801377	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataagaaaacaaatttctgCaaaagacaatgtgagccatt	6	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801377	A	A	185801377	4	1	151	1	0	0	0	0	0	1	0	0	18299	718	25	3	1268	3	ZNF804A	2	185801377	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2181530	185801377	57397996	300	129787											
ZNF804A	91752	broad.mit.edu	37	chr2	185801697	185801697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgcagccaagtcactcCtcttttggctgatgatattc	7	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801697	A	A	185801697	3	1	151	1	0	0	0	0	1	0	0	0	18299	681	24	2	1588	2	ZNF804A	2	185801697	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	320	185801697	57397676	301	129788											
ZNF804A	91752	broad.mit.edu	37	chr2	185802923	185802923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaattgacaataccctgCttgaacacaaagaaagaagt	7	8	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185802923	A	A	185802923	3	1	151	1	0	0	0	0	1	0	0	0	18299	797	28	3	2814	3	ZNF804A	2	185802923	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1226	185802923	57396450	302	129789											
ZSWIM2	151112	broad.mit.edu	37	chr2	187692819	187692819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttcgtgtaatttccccCatacagttactatacctttt	3	11	0	0	rs147192687		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187692819	A	A	187692819	3	1	151	1	0	0	0	0	1	0	0	0	18370	594	21	2	111	2	ZSWIM2	2	187692819	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1889896	187692819	55506554	303	129790											
ZSWIM2	151112	broad.mit.edu	37	chr2	187694603	187694603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgttttggtgtgtaaaCttggctgaatgagaataagc	12	3	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187694603	A	A	187694603	3	1	151	1	0	0	0	0	1	0	0	0	18370	565	20	3	963	3	ZSWIM2	2	187694603	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1784	187694603	55504770	304	129791											
ZSWIM2	151112	broad.mit.edu	37	chr2	187694632	187694632	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagaataagcagagacatGagtgtttacatgttattata	9	3	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187694632	A	A	187694632	1	1	151	0	1	0	0	0	0	0	0	0	18370	1305	45	4		4	ZSWIM2	2	187694632	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	29	187694632	55504741	305	129792											
COL3A1	1281	broad.mit.edu	37	chr2	189870985	189870985	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggatctcctggtggcaaGgtataataaacacatgtgca	11	7	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189870985	A	A	189870985	2	1	151	1	0	0	0	0	0	0	0	1	3720	1014	35	4		4	COL3A1	2	189870985	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	2176353	189870985	53328388	306	129793											
COL3A1	1281	broad.mit.edu	37	chr2	189875573	189875573	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtgaattcaaggctgaagGaaatagcaaattcacctaca	9	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189875573	A	A	189875573	3	1	151	1	0	0	0	0	1	0	0	0	3720	1174	41	4	4409	4	COL3A1	2	189875573	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4588	189875573	53323800	307	129794											
COL5A2	1290	broad.mit.edu	37	chr2	189931133	189931133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccctttctcccactggccCtggaggaccaactgttcctg	8	16	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189931133	A	A	189931133	3	1	151	1	0	0	0	0	1	0	0	0	3729	681	24	2	3081	2	COL5A2	2	189931133	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	55560	189931133	53268240	308	129795											
STAT4	6775	broad.mit.edu	37	chr2	191922631	191922631	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgtgcccggccggttcctAatttcaaataagaaatattt	7	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191922631	G	G	191922631	1	3	151	0	1	0	0	0	0	0	0	0	15385	377	13	5		5	STAT4	2	191922631	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1991498	191922631	51276742	309	129796											
MYO1B	4430	broad.mit.edu	37	chr2	192288585	192288585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctggtacagttcagacagGacaaagtatgtgtgaagttt	11	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192288585	T	T	192288585	3	4	151	1	0	0	0	0	1	0	0	0	10163	1174	41	3	3428	3	MYO1B	2	192288585	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	365954	192288585	50910788	310	129797											
DNAH7	56171	broad.mit.edu	37	chr2	196729567	196729567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgggatcatggaaatcaCaaaacattaagctgcgtaag	9	7	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196729567	A	A	196729567	3	1	151	1	0	0	0	0	1	0	0	0	4646	478	17	3	5362	3	DNAH7	2	196729567	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4440982	196729567	46469806	311	129798											
SATB2	23314	broad.mit.edu	37	chr2	200137222	200137222	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcttcctggtctgggtaCaggcctacatcatgaataaa	10	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200137222	A	A	200137222	2	1	151	1	0	0	0	0	0	0	0	1	13966	465	17	3		3	SATB2	2	200137222	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	3407655	200137222	43062151	312	129799											
AOX1	316	broad.mit.edu	37	chr2	201468757	201468757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagacaagtccaaaactcttCgcagaagaggagtttctgcc	9	10	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201468757	A	A	201468757	3	1	151	1	0	0	0	0	1	0	0	0	731	883	31	3	636	3	AOX1	2	201468757	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1331535	201468757	41730616	313	129800											
MPP4	58538	broad.mit.edu	37	chr2	202550695	202550695	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcattgcttcctcactctCagggatattgtctggcagtg	9	12	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202550695	A	A	202550695	4	1	151	1	0	0	0	0	0	1	0	0	9830	835	29	3	1542	3	MPP4	2	202550695	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1081938	202550695	40648678	314	129801											
FZD7	8324	broad.mit.edu	37	chr2	202899448	202899448	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgctgctgggcgcactGtccgcgggcgccggggcgca	19	15	0	0	rs35732430	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202899448	C	C	202899448	2	2	151	1	0	0	0	0	0	0	0	1	6195	1364	48	4		4	FZD7	2	202899448	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	348753	202899448	40299925	315	129802											
CYP20A1	57404	broad.mit.edu	37	chr2	204111546	204111546	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctggttaatttgcatgagaGatatgggcctgtggtctcct	12	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204111546	T	T	204111546	3	4	151	1	0	0	0	0	1	0	0	0	4185	942	33	3	201	3	CYP20A1	2	204111546	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1212098	204111546	39087827	316	129803											
PARD3B	117583	broad.mit.edu	37	chr2	206480373	206480373	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccgccagctccccagcacAaaggaccctttcgacaagac	7	19	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206480373	T	T	206480373	4	4	151	1	0	0	0	0	0	1	0	0	11538	131	5	5	3544	5	PARD3B	2	206480373	Nonsense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	2368827	206480373	36719000	317	129804											
NRP2	8828	broad.mit.edu	37	chr2	206640996	206640996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctgccagggaccgagCccacagtggacacggtgccc	12	18	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206640996	A	A	206640996	1	1	151	0	1	0	0	0	0	0	0	0	10756	739	26	3		3	NRP2	2	206640996	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	160623	206640996	36558377	318	129805											
INO80D	54891	broad.mit.edu	37	chr2	206893116	206893116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacattaggctcattttagaCagggtaaacgagaattagga	10	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206893116	A	A	206893116	1	1	151	0	1	0	0	0	0	0	0	0	7819	493	17	3		3	INO80D	2	206893116	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	252120	206893116	36306257	319	129806											
NDUFS1	4719	broad.mit.edu	37	chr2	206991267	206991267	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttgacaattacatacctgtCatgtagaagtcttttatagt	7	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206991267	A	A	206991267	3	1	151	1	0	0	0	0	1	0	0	0	10386	826	29	3	103	3	NDUFS1	2	206991267	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	98151	206991267	36208106	320	129807											
GPR1	2825	broad.mit.edu	37	chr2	207041555	207041555	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagataagacaggatggatCaagtggatatagtggtccag	14	4	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207041555	A	A	207041555	3	1	151	1	0	0	0	0	1	0	0	0	6686	825	29	3	654	3	GPR1	2	207041555	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	50288	207041555	36157818	321	129808											
ZDBF2	57683	broad.mit.edu	37	chr2	207169696	207169696	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagggacagcagcagccCttggagtttgttcataaaat	12	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207169696	A	A	207169696	2	1	151	1	0	0	0	0	0	0	0	1	17725	668	24	2		2	ZDBF2	2	207169696	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	128141	207169696	36029677	322	129809											
ZDBF2	57683	broad.mit.edu	37	chr2	207171384	207171384	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgagttctgattctcCggcttctctttatcattcag	6	11	6	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207171384	T	T	207171384	3	4	151	1	0	0	0	0	1	0	0	0	17725	652	23	4	2142	4	ZDBF2	2	207171384	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1688	207171384	36027989	323	129810											
DYTN	391475	broad.mit.edu	37	chr2	207530852	207530852	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggtcctttttgtgggaaaaGatgctggaaaaccctgtgtc	12	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207530852	T	T	207530852	1	4	151	0	1	0	0	0	0	0	0	0	4901	957	33	3		3	DYTN	2	207530852	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	359468	207530852	35668521	324	129811											
CPS1	1373	broad.mit.edu	37	chr2	211438024	211438024	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaactgtttcttcaggcAcagacagcacacattgtcct	7	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211438024	C	C	211438024	2	2	151	1	0	0	0	0	0	0	0	1	3855	146	6	5		5	CPS1	2	211438024	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	3907172	211438024	31761349	325	129812											
CPS1	1373	broad.mit.edu	37	chr2	211525277	211525277	+	Silent	SNP	C	T	T													aagactcttggggttgacttCattgatgtggccaccaaggt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211525277	T	T	211525277	2	4	151	1	0	0	0	0	0	0	0	1	3855	825	29	4		4	CPS1	2	211525277	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	87253	211525277	31674096	326	129813	562	2									
CPS1	1373	broad.mit.edu	37	chr2	211525286	211525286	+	Silent	SNP	G	T	T													ggggttgacttcattgatgtGgccaccaaggtgatgattgg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211525286	T	T	211525286	2	4	151	1	0	0	0	0	0	0	0	1	3855	1335	47	2		2	CPS1	2	211525286	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	9	211525286	31674087	327	129814	562	2									
ERBB4	2066	broad.mit.edu	37	chr2	212251683	212251683	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcagcactgtacctctGggtgctactgtcctcttgga	13	11	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212251683	A	A	212251683	4	1	151	1	0	0	0	0	0	1	0	0	5251	1357	47	4	558	4	ERBB4	2	212251683	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	726397	212251683	30947690	328	129815											
BARD1	580	broad.mit.edu	37	chr2	215645838	215645838	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagtctatttcaccatttaTctgaggactggagataacag	8	7	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215645838	A	A	215645838	3	1	151	1	0	0	0	0	1	0	0	0	1317	1435	50	5	1605	5	BARD1	2	215645838	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	3394155	215645838	27553535	329	129816											
XRCC5	7520	broad.mit.edu	37	chr2	217040384	217040384	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgttcttcactgttagGtgggcaccaggctttacaga	10	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217040384	A	A	217040384	1	1	151	0	1	0	0	0	0	0	0	0	17583	1276	44	4		4	XRCC5	2	217040384	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1394546	217040384	26158989	330	129817											
MARCH4	57574	broad.mit.edu	37	chr2	217142255	217142255	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccccttgaatccaagcctCtggcctctcctgagctccca	6	19	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217142255	A	A	217142255	1	1	151	0	1	0	0	0	0	0	0	0	9395	928	32	3		3	MARCH4	2	217142255	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	101871	217142255	26057118	331	129818											
TNS1	7145	broad.mit.edu	37	chr2	218700935	218700935	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctcccgagcctgtacccCtgggaggaaagcagggtgta	13	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	218700935	G	G	218700935	5	3	151	1	0	0	0	0	0	0	1	0	16466	695	24	4	2639	4	TNS1	2	218700935	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	1558680	218700935	24498438	332	129819											
SLC23A3	151295	broad.mit.edu	37	chr2	220034065	220034065	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggatggcccggggtagcttCtggctggtcagcaccagagc	16	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220034065	A	A	220034065	3	1	151	1	0	0	0	0	1	0	0	0	14578	912	32	3	1512	3	SLC23A3	2	220034065	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1333130	220034065	23165308	333	129820											
PTPRN	5798	broad.mit.edu	37	chr2	220161136	220161136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggccacaaggaccccagCgaagccctccctttaagagc	10	16	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220161136	A	A	220161136	1	1	151	0	1	0	0	0	0	0	0	0	12915	783	27	3		3	PTPRN	2	220161136	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	127071	220161136	23038237	334	129821											
SPEG	10290	broad.mit.edu	37	chr2	220350089	220350089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggggaaagccgaagccGgctccgctggggcttctctc	14	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220350089	T	T	220350089	3	4	151	1	0	0	0	0	1	0	0	0	15154	1116	39	1	7765	1	SPEG	2	220350089	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	188953	220350089	22849284	335	129822											
ACCN4	55515	broad.mit.edu	37	chr2	220397568	220397568	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgtgggggacaggggaagtGatcgtagattccaggaataa	17	4	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220397568	C	C	220397568	1	2	151	0	1	0	0	0	0	0	0	0	131	1305	45	4		4	ACCN4	2	220397568	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	47479	220397568	22801805	336	129823											
SLC4A3	6508	broad.mit.edu	37	chr2	220505177	220505177	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccatcgtcatgggggctgtGctgcgtcggatcccattggc	14	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220505177	C	C	220505177	2	2	151	1	0	0	0	0	0	0	0	1	14769	1306	46	4		4	SLC4A3	2	220505177	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	107609	220505177	22694196	337	129824											
PAX3	5077	broad.mit.edu	37	chr2	223158477	223158477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggagaccagggcctttcCtgagggcataaaagctactt	11	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223158477	A	A	223158477	1	1	151	0	1	0	0	0	0	0	0	0	11574	695	24	2		2	PAX3	2	223158477	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2653300	223158477	20040896	338	129825											
ACSL3	2181	broad.mit.edu	37	chr2	223806189	223806190	+	Intron	INS	-	T	T													aacttaaataccttttcttcINSttttctttttttttaatcat					rs142404540	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223806190	T	T	223806189	6	5	151	0	1	1	1	0	0	0	0	0	178	928	32	0		0	ACSL3	2	223806189	Intron	INS	-	TCGA-50-5049-01A-01D-1625-08	647712	223806189	19393184	339	129826											
IRS1	3667	broad.mit.edu	37	chr2	227661390	227661390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagctggtcccggaagggaCggcgttgctgctgctgctgc	16	11	0	0	rs141094678	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227661390	A	A	227661390	3	1	151	1	0	0	0	0	1	0	0	0	7910	536	19	3	1667	3	IRS1	2	227661390	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3855201	227661390	15537983	340	129827											
SPHKAP	80309	broad.mit.edu	37	chr2	228855920	228855920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagaacagacacaaccaCagccttatccttctttccaa	5	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228855920	A	A	228855920	1	1	151	0	1	0	0	0	0	0	0	0	15166	493	17	3		3	SPHKAP	2	228855920	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1194530	228855920	14343453	341	129828											
TRIP12	9320	broad.mit.edu	37	chr2	230657800	230657800	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctggatgcctttgtaactGgcattttaattgatgtgtgt	11	5	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230657800	A	A	230657800	4	1	151	1	0	0	0	0	0	1	0	0	16681	1357	47	4	2237	4	TRIP12	2	230657800	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1801880	230657800	12541573	342	129829											
CHRND	1144	broad.mit.edu	37	chr2	233398755	233398755	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggatacatctccaaggccGaggagtacttcctgctcaag	11	11	2	0	rs145920855		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233398755	T	T	233398755	4	4	151	1	0	0	0	0	0	1	0	0	3425	1059	37	3	1200	3	CHRND	2	233398755	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2740955	233398755	9800618	343	129830											
CHRNG	1146	broad.mit.edu	37	chr2	233404411	233404411	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctctctctgccccagacCttggagctgttgtcccaccc	7	18	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233404411	A	A	233404411	1	1	151	0	1	0	0	0	0	0	0	0	3427	696	24	2		2	CHRNG	2	233404411	5'Flank	SNP	C	TCGA-50-5049-01A-01D-1625-08	5656	233404411	9794962	344	129831											
UGT1A7	54577	broad.mit.edu	37	chr2	234591014	234591014	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagagttgttttgatgCagtgtttctcgatccttttg	11	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234591014	G	G	234591014	3	3	151	1	0	0	0	0	1	0	0	0	17076	710	25	4	433	4	UGT1A7	2	234591014	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1186603	234591014	8608359	345	129832											
ASB18	401036	broad.mit.edu	37	chr2	237172946	237172946	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttaatctcttcactaaatCtgagttgagtgggtagtcgg	10	7	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237172946	G	G	237172946	3	3	151	1	0	0	0	0	1	0	0	0	1026	913	32	4	1380	4	ASB18	2	237172946	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2581932	237172946	6026427	346	129833											
COL6A3	1293	broad.mit.edu	37	chr2	238253293	238253293	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtcagcaaaccggatctcCgtggtcacctcgttgttgta	11	11	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238253293	T	T	238253293	2	4	151	1	0	0	0	0	0	0	0	1	3733	639	23	4		4	COL6A3	2	238253293	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1080347	238253293	4946080	347	129834											
RBM44	375316	broad.mit.edu	37	chr2	238726448	238726448	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccacactgtatttgatGgcagtgtactaagaagcaat	9	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238726448	T	T	238726448	3	4	151	1	0	0	0	0	1	0	0	0	13246	1348	47	2	895	2	RBM44	2	238726448	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	473155	238726448	4472925	348	129835											
PER2	8864	broad.mit.edu	37	chr2	239161493	239161493	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaactgaggatgtgcggccGgcctgccaggtgtgctgttt	16	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239161493	A	A	239161493	1	1	151	0	1	0	0	0	0	0	0	0	11824	1131	39	4		4	PER2	2	239161493	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	435045	239161493	4037880	349	129836											
PER2	8864	broad.mit.edu	37	chr2	239161618	239161618	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtccgcccctacagctgCtgtctctgtggcccctgtgg	12	16	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239161618	T	T	239161618	3	4	151	1	0	0	0	0	1	0	0	0	11824	797	28	4	741	4	PER2	2	239161618	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	125	239161618	4037755	350	129837											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239256183	239256183	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgtgtgaatgtgaatgtgGactctcagattcatgcttta	11	5	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239256183	T	T	239256183	1	4	151	0	1	0	0	0	0	0	0	0	16564	1189	41	3		3	TRAF3IP1	2	239256183	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	94565	239256183	3943190	351	129838											
AGXT	189	broad.mit.edu	37	chr2	241812330	241812330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaccccatccagcctgGggccaggccctccagtggcc	11	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241812330	T	T	241812330	1	4	151	0	1	0	0	0	0	0	0	0	404	1247	43	2		2	AGXT	2	241812330	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2556147	241812330	1387043	352	129839											
CHL1	10752	broad.mit.edu	37	chr3	424236	424236	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtccaaggaaagaaaacCacagttatcttacctttggc	8	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	424236	T	T	424236	2	4	151	1	0	0	0	0	0	0	0	1	3380	581	21	4		4	CHL1	3	424236	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08		424236	197598194	353	129840											
SYN2	6854	broad.mit.edu	37	chr3	12200174	12200174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccacaaccaccccctgCtgtggacctcgcggacctcg	8	21	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12200174	A	A	12200174	1	1	151	0	1	0	0	0	0	0	0	0	15560	812	28	3		3	SYN2	3	12200174	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	11775938	12200174	185822256	354	129841											
METTL6	131965	broad.mit.edu	37	chr3	15457374	15457374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacagactctggcggtaCatgatccagaagatcatctt	8	11	3	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15457374	A	A	15457374	3	1	151	1	0	0	0	0	1	0	0	0	9597	478	17	3	430	3	METTL6	3	15457374	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3257200	15457374	182565056	355	129842											
RARB	5915	broad.mit.edu	37	chr3	25622195	25622195	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattaccctgctgaaggcCgcctgcctggacatcctggt	10	14	0	1	rs115482149	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25622195	A	A	25622195	2	1	151	1	0	0	0	0	0	0	0	1	13161	639	23	1		1	RARB	3	25622195	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	10164821	25622195	172400235	356	129843											
TGFBR2	7048	broad.mit.edu	37	chr3	30733165	30733165	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaggcagcaggaagctGcccctgaactgatgcttcct	11	12	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30733165	T	T	30733165	1	4	151	0	1	0	0	0	0	0	0	0	15945	1334	46	3		3	TGFBR2	3	30733165	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	5110970	30733165	167289265	357	129844											
DLEC1	9940	broad.mit.edu	37	chr3	38126765	38126766	+	Missense_Mutation	DNP	GG	TT	TT													gtcacttttgtcatgcacagGgatgttcccaggaaaaggtg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38126766	TT	TT	38126765	3	4	151	1	0	0	0	0	1	0	0	0	4592	1246	43	2	1292	2	DLEC1	3	38126765	Missense_Mutation	DNP	GG	TCGA-50-5049-01A-01D-1625-08	7393600	38126765	159895665	358	129845											
ABHD5	51099	broad.mit.edu	37	chr3	43744035	43744035	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttgcttgggcacaacctAggtggattcttggctgctgc	12	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43744035	G	G	43744035	2	3	151	1	0	0	0	0	0	0	0	1	85	407	15	5		5	ABHD5	3	43744035	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	5617270	43744035	154278395	359	129846											
CDCP1	64866	broad.mit.edu	37	chr3	45153697	45153697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacacagtgccattgctgCagaaggttccgatcctgacc	12	12	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45153697	A	A	45153697	3	1	151	1	0	0	0	0	1	0	0	0	3123	710	25	3	2013	3	CDCP1	3	45153697	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1409662	45153697	152868733	360	129847											
PLXNB1	5364	broad.mit.edu	37	chr3	48465380	48465380	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactcacgaagtggtggctgTactcggagaggcggcccact	14	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48465380	A	A	48465380	3	1	151	1	0	0	0	0	1	0	0	0	12218	1638	57	5	5910	5	PLXNB1	3	48465380	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	3311683	48465380	149557050	361	129848											
COL7A1	1294	broad.mit.edu	37	chr3	48619147	48619147	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcacttacccgttcccCttggactccggtagctcctc	7	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48619147	A	A	48619147	3	1	151	1	0	0	0	0	1	0	0	0	3736	681	24	2	4404	2	COL7A1	3	48619147	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	153767	48619147	149403283	362	129849											
UQCRC1	7384	broad.mit.edu	37	chr3	48637934	48637934	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatctagatgagataccagGgcatttctgaggatgttttt	10	7	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48637934	A	A	48637934	2	1	151	1	0	0	0	0	0	0	0	1	17145	1219	43	4		4	UQCRC1	3	48637934	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	18787	48637934	149384496	363	129850											
RBM6	10180	broad.mit.edu	37	chr3	50103766	50103767	+	Missense_Mutation	DNP	CC	TT	TT													agaggaggaacagacccctcCcccacagccccgcacagcac							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50103767	TT	TT	50103766	3	4	151	1	0	0	0	0	1	0	0	0	13252	623	22	4	2836	4	RBM6	3	50103766	Missense_Mutation	DNP	CC	TCGA-50-5049-01A-01D-1625-08	1465832	50103766	147918664	364	129851											
HYAL3	8372	broad.mit.edu	37	chr3	50332756	50332756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagcctgggggatgcccCcattgtgagctgtgcccctg	14	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50332756	A	A	50332756	3	1	151	1	0	0	0	0	1	0	0	0	7535	623	22	2	987	2	HYAL3	3	50332756	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	228990	50332756	147689674	365	129852											
ADAMTS9	56999	broad.mit.edu	37	chr3	64547231	64547231	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgtgaaatgcctggcaggTacccctttgtggctctactt	10	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64547231	A	A	64547231	1	1	151	0	1	0	0	0	0	0	0	0	273	1653	57	5		5	ADAMTS9	3	64547231	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	14214475	64547231	133475199	366	129853											
MAGI1	9223	broad.mit.edu	37	chr3	65367734	65367734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccagtggtacgatgtgaCcaatataaatctgttgagta	9	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65367734	A	A	65367734	3	1	151	1	0	0	0	0	1	0	0	0	9282	507	18	3	2047	3	MAGI1	3	65367734	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	820503	65367734	132654696	367	129854											
FRMD4B	23150	broad.mit.edu	37	chr3	69299394	69299394	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattgcaggggaaagtgggGggtgtggagagactcattga	18	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69299394	A	A	69299394	1	1	151	0	1	0	0	0	0	0	0	0	6112	1247	43	4		4	FRMD4B	3	69299394	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3931660	69299394	128723036	368	129855											
CNTN3	5067	broad.mit.edu	37	chr3	74411047	74411047	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggacatcaaaatacctttcaTgctcctgcacgctcacatcc	5	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74411047	A	A	74411047	3	1	151	1	0	0	0	0	1	0	0	0	3674	1464	51	5	1780	5	CNTN3	3	74411047	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	5111653	74411047	123611383	369	129856											
PROS1	5627	broad.mit.edu	37	chr3	93611874	93611874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctttccaccacgaagtGcaatcaggagccacgctgag	9	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93611874	T	T	93611874	3	4	151	1	0	0	0	0	1	0	0	0	12664	1319	46	3	996	3	PROS1	3	93611874	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	19200827	93611874	104410556	370	129857											
PROS1	5627	broad.mit.edu	37	chr3	93624698	93624698	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtggtaacttccaggtgtAttatcacaaatttgactgca	8	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93624698	G	G	93624698	2	3	151	1	0	0	0	0	0	0	0	1	12664	446	16	5		5	PROS1	3	93624698	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	12824	93624698	104397732	371	129858											
EPHA6	285220	broad.mit.edu	37	chr3	97167406	97167406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctcctttttttctgtcCcccaggaacatgagcagctg	7	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97167406	A	A	97167406	1	1	151	0	1	0	0	0	0	0	0	0	5213	638	22	2		2	EPHA6	3	97167406	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3542708	97167406	100855024	372	129859											
OR5K3	403277	broad.mit.edu	37	chr3	98110287	98110287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttcatgtatgctcgaCcaggtgcagttaatgaaggg	11	8	2	1	rs114784912	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98110287	A	A	98110287	3	1	151	1	0	0	0	0	1	0	0	0	11262	507	18	3	780	3	OR5K3	3	98110287	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	942881	98110287	99912143	373	129860											
GPR15	2838	broad.mit.edu	37	chr3	98250825	98250825	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtttctaaaatttataCaaaaacatcatatgtaagta	5	4	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98250825	T	T	98250825	1	4	151	0	1	0	0	0	0	0	0	0	6720	493	17	4		4	GPR15	3	98250825	5'Flank	SNP	C	TCGA-50-5049-01A-01D-1625-08	140538	98250825	99771605	374	129861											
GPR15	2838	broad.mit.edu	37	chr3	98251619	98251619	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcatctttattgtcgtgGcagcctttcttgtctcctgg	9	10	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98251619	A	A	98251619	3	1	151	1	0	0	0	0	1	0	0	0	6720	1203	42	4	744	4	GPR15	3	98251619	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	794	98251619	99770811	375	129862											
GPR128	84873	broad.mit.edu	37	chr3	100362478	100362478	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcttaatatgacgaaaaGtaagtctcaaactttgtgac	7	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100362478	T	T	100362478	5	4	151	1	0	0	0	0	0	0	1	0	6706	1043	36	3	977	3	GPR128	3	100362478	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	2110859	100362478	97659952	376	129863											
CCDC54	84692	broad.mit.edu	37	chr3	107096575	107096575	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattcaactggatatcccacTgtgacatctgatgattgtaa	8	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107096575	A	A	107096575	2	1	151	1	0	0	0	0	0	0	0	1	2852	1567	55	5		5	CCDC54	3	107096575	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	6734097	107096575	90925855	377	129864											
KIAA2018	205717	broad.mit.edu	37	chr3	113376009	113376009	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgttggtggacattaTggggctgagagtggacagag	16	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113376009	C	C	113376009	3	2	151	1	0	0	0	0	1	0	0	0	8338	1464	51	5	2221	5	KIAA2018	3	113376009	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	6279434	113376009	84646421	378	129865											
ATP6V1A	523	broad.mit.edu	37	chr3	113513802	113513802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctagatgggctgaggccCttagagaaatctctggtcgt	12	10	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113513802	A	A	113513802	3	1	151	1	0	0	0	0	1	0	0	0	1181	681	24	2	1102	2	ATP6V1A	3	113513802	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	137793	113513802	84508628	379	129866											
GAP43	2596	broad.mit.edu	37	chr3	115395290	115395290	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactgataactcgccgtcctCcaaggctgaagatgccccag	9	15	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115395290	T	T	115395290	3	4	151	1	0	0	0	0	1	0	0	0	6297	855	30	4	609	4	GAP43	3	115395290	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1881488	115395290	82627140	380	129867											
ARHGAP31	57514	broad.mit.edu	37	chr3	119134119	119134119	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttggaccctgccattcccAttgctgacctcttctggttt	7	14	2	1	rs12107254		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119134119	T	T	119134119	3	4	151	1	0	0	0	0	1	0	0	0	882	217	8	5	3389	5	ARHGAP31	3	119134119	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	3738829	119134119	78888311	381	129868											
FBXO40	51725	broad.mit.edu	37	chr3	121341476	121341476	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatctcatcaagaccaccctCcagtgtgctttggaaagaga	9	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121341476	A	A	121341476	2	1	151	1	0	0	0	0	0	0	0	1	5806	842	30	3		3	FBXO40	3	121341476	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2207357	121341476	76680954	382	129869											
GOLGB1	2804	broad.mit.edu	37	chr3	121433902	121433902	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attatcttctaaagatacacTgtatgctgtttactagttta	5	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121433902	A	A	121433902	1	1	151	0	1	0	0	0	0	0	0	0	6629	1595	55	5		5	GOLGB1	3	121433902	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	92426	121433902	76588528	383	129870											
DTX3L	151636	broad.mit.edu	37	chr3	122287986	122287986	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgggacccaagatgacatTtcagctgccaaacaaaaaat	7	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122287986	A	A	122287986	2	1	151	1	0	0	0	0	0	0	0	1	4836	1829	64	5		5	DTX3L	3	122287986	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	854084	122287986	75734444	384	129871											
HSPBAP1	79663	broad.mit.edu	37	chr3	122459941	122459941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgattgcctcttctaccCgggctaggtgatcctcttcc	11	13	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122459941	A	A	122459941	3	1	151	1	0	0	0	0	1	0	0	0	7495	652	23	1	629	1	HSPBAP1	3	122459941	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	171955	122459941	75562489	385	129872											
MYLK	4638	broad.mit.edu	37	chr3	123419658	123419658	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcctgctggcggatcGcctcctcagtgtgctgcctc	10	18	1	0	rs140989388		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123419658	C	C	123419658	3	2	151	1	0	0	0	0	1	0	0	0	10150	1087	38	4	3155	4	MYLK	3	123419658	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	959717	123419658	74602772	386	129873											
MYLK	4638	broad.mit.edu	37	chr3	123458924	123458924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaaaagattcaacagcaGgggtgggtgggatagtgatg	16	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123458924	T	T	123458924	1	4	151	0	1	0	0	0	0	0	0	0	10150	1015	35	2		2	MYLK	3	123458924	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	39266	123458924	74563506	387	129874											
KALRN	8997	broad.mit.edu	37	chr3	124281868	124281868	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggagggtctggtccccaGcagcgccctgtgcatctcac	12	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124281868	A	A	124281868	3	1	151	1	0	0	0	0	1	0	0	0	8045	971	34	4	5309	4	KALRN	3	124281868	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	822944	124281868	73740562	388	129875											
ZXDC	79364	broad.mit.edu	37	chr3	126184955	126184955	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggcactgttcccgtttctCacagggaagcagctccccat	9	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126184955	T	T	126184955	1	4	151	0	1	0	0	0	0	0	0	0	18381	841	29	4		4	ZXDC	3	126184955	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1903087	126184955	71837475	389	129876											
UROC1	131669	broad.mit.edu	37	chr3	126220152	126220152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaaaagcagaacaggtgCcccctgcacctgtgcatagg	10	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126220152	A	A	126220152	1	1	151	0	1	0	0	0	0	0	0	0	17154	739	26	3		3	UROC1	3	126220152	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	35197	126220152	71802278	390	129877											
TF	7018	broad.mit.edu	37	chr3	133473249	133473249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaaagcatggcctctccGctcccctccctcctcaagag	7	17	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133473249	T	T	133473249	1	4	151	0	1	0	0	0	0	0	0	0	15908	1102	38	3		3	TF	3	133473249	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	7253097	133473249	64549181	391	129878											
TF	7018	broad.mit.edu	37	chr3	133494456	133494456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacaagatattacgtcaaCagcaggtatggaccagccag	9	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133494456	A	A	133494456	3	1	151	1	0	0	0	0	1	0	0	0	15908	479	17	3	1925	3	TF	3	133494456	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	21207	133494456	64527974	392	129879											
C3orf36	80111	broad.mit.edu	37	chr3	133647067	133647067	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattttacagatttaaaaagGggtgcctactgtggcccatt	10	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133647067	C	C	133647067	1	2	151	0	1	0	0	0	0	0	0	0	2248	1247	43	4		4	C3orf36	3	133647067	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	152611	133647067	64375363	393	129880											
EPHB1	2047	broad.mit.edu	37	chr3	134968293	134968293	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacagcttcctcactgctGgcttcacctccctccagctg	9	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134968293	T	T	134968293	3	4	151	1	0	0	0	0	1	0	0	0	5216	1348	47	2	2864	2	EPHB1	3	134968293	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1321226	134968293	63054137	394	129881											
DZIP1L	199221	broad.mit.edu	37	chr3	137783404	137783404	+	Intron	DEL	C	-	-													tccccaaccttcaccccaggCcccccaaactcagagctggt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	137783404	-	-	137783404	6	5	151	0	1	1	0	1	0	0	0	0	4904	754	26	0		0	DZIP1L	3	137783404	Intron	DEL	C	TCGA-50-5049-01A-01D-1625-08	2815111	137783404	60239026	395	129882											
DZIP1L	199221	broad.mit.edu	37	chr3	137822353	137822353	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctgcattagcagctgcTgcagggtgctgatcatcttg	12	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137822353	A	A	137822353	3	1	151	1	0	0	0	0	1	0	0	0	4904	1580	55	5	1911	5	DZIP1L	3	137822353	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	38949	137822353	60200077	396	129883											
DBR1	51163	broad.mit.edu	37	chr3	137888933	137888933	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcaagtctgctgtaaTgcgctttttacgtacctgtt	8	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137888933	C	C	137888933	1	2	151	0	1	0	0	0	0	0	0	0	4290	1479	51	5		5	DBR1	3	137888933	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	66580	137888933	60133497	397	129884											
RBP2	5948	broad.mit.edu	37	chr3	139172010	139172010	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaccacaggtcagctccTgcaacgtcagaaagtgggtg	13	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139172010	A	A	139172010	1	1	151	0	1	0	0	0	0	0	0	0	13264	1594	55	5		5	RBP2	3	139172010	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1283077	139172010	58850420	398	129885											
CLSTN2	64084	broad.mit.edu	37	chr3	140280938	140280938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagggctgttttctgagCtgtccttcatgcctgcattt	10	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140280938	A	A	140280938	1	1	151	0	1	0	0	0	0	0	0	0	3594	812	28	3		3	CLSTN2	3	140280938	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1108928	140280938	57741492	399	129886											
TRPC1	7220	broad.mit.edu	37	chr3	142523341	142523341	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttagctactttgatgacAaatgtacgttacctccacct	7	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142523341	G	G	142523341	3	3	151	1	0	0	0	0	1	0	0	0	16703	131	5	5	1963	5	TRPC1	3	142523341	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	2242403	142523341	55499089	400	129887											
CHST2	9435	broad.mit.edu	37	chr3	142841089	142841089	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatctgcacgcaatgccacGcaggccgccaatgcctggcg	12	15	1	0	rs147682013	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142841089	T	T	142841089	2	4	151	1	0	0	0	0	0	0	0	1	3435	1074	38	3		3	CHST2	3	142841089	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	317748	142841089	55181341	401	129888											
ZIC1	7545	broad.mit.edu	37	chr3	147128031	147128031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccgttcgccgacggcatGggcgccttcaagctcaaccc	10	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147128031	T	T	147128031	3	4	151	1	0	0	0	0	1	0	0	0	17804	1348	47	2	134	2	ZIC1	3	147128031	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4286942	147128031	50894399	402	129889											
CPA3	1359	broad.mit.edu	37	chr3	148614503	148614503	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catacttcctaaagaactgcCctctgtttggaataagccaa	6	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148614503	A	A	148614503	1	1	151	0	1	0	0	0	0	0	0	0	3823	638	22	2		2	CPA3	3	148614503	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	1486472	148614503	49407927	403	129890											
HLTF	6596	broad.mit.edu	37	chr3	148757980	148757980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtatgagcaacacttaaCagaagaacaaatataaatat	6	5	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148757980	A	A	148757980	1	1	151	0	1	0	0	0	0	0	0	0	7282	493	17	3		3	HLTF	3	148757980	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	143477	148757980	49264450	404	129891											
HPS3	84343	broad.mit.edu	37	chr3	148857790	148857790	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatcttcattccttctcaGgagattatttggtagcaatt	6	7	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148857790	T	T	148857790	5	4	151	1	0	0	0	0	0	0	1	0	7407	1014	35	2	223	2	HPS3	3	148857790	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	99810	148857790	49164640	405	129892											
GPR87	53836	broad.mit.edu	37	chr3	151012145	151012145	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agacaagaaaagtgtaatttCtttgcagtaatataggattt	8	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151012145	G	G	151012145	3	3	151	1	0	0	0	0	1	0	0	0	6781	922	32	4	191	4	GPR87	3	151012145	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2154355	151012145	47010285	406	129893											
MED12L	116931	broad.mit.edu	37	chr3	151082916	151082916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgctgggcaagatcctcaGtgacaatgcggccaatcgct	11	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151082916	T	T	151082916	3	4	151	1	0	0	0	0	1	0	0	0	9522	1029	36	3	3080	3	MED12L	3	151082916	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	70771	151082916	46939514	407	129894											
MED12L	116931	broad.mit.edu	37	chr3	151101662	151101662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacttcaggaactgttgaCatgcacactaacaagtatgt	7	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151101662	A	A	151101662	3	1	151	1	0	0	0	0	1	0	0	0	9522	477	17	3	4797	3	MED12L	3	151101662	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	18746	151101662	46920768	408	129895											
GPR149	344758	broad.mit.edu	37	chr3	154147322	154147322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatattcagggttcctggcGgatttaaaaggtccgtagaa	12	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154147322	T	T	154147322	3	4	151	1	0	0	0	0	1	0	0	0	6719	1116	39	1	2128	1	GPR149	3	154147322	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3045660	154147322	43875108	409	129896											
B3GALNT1	8706	broad.mit.edu	37	chr3	160803765	160803765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaacttgatgggttttaCgtgacccatcatttcataga	7	8	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160803765	A	A	160803765	3	1	151	1	0	0	0	0	1	0	0	0	1250	536	19	3	221	3	B3GALNT1	3	160803765	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6656443	160803765	37218665	410	129897											
B3GALNT1	8706	broad.mit.edu	37	chr3	160804474	160804474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactcaggagtgacagcagCaggaggctccatttgaggga	14	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160804474	A	A	160804474	2	1	151	1	0	0	0	0	0	0	0	1	1250	697	25	3		3	B3GALNT1	3	160804474	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	709	160804474	37217956	411	129898											
SI	6476	broad.mit.edu	37	chr3	164709192	164709192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtaggatgtgaccaccaCggacatgtaggtttattgtg	13	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164709192	A	A	164709192	3	1	151	1	0	0	0	0	1	0	0	0	14410	536	19	3	446	3	SI	3	164709192	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3904718	164709192	33313238	412	129899											
SI	6476	broad.mit.edu	37	chr3	164714347	164714347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatttgcaatgttgtgattCcttgagtatggataaaatgc	10	4	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164714347	A	A	164714347	3	1	151	1	0	0	0	0	1	0	0	0	14410	854	30	3	851	3	SI	3	164714347	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5155	164714347	33308083	413	129900											
SI	6476	broad.mit.edu	37	chr3	164781164	164781164	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaatatgaatgattgaaaTaaagagagcagttaaaacat	7	3	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164781164	C	C	164781164	1	2	151	0	1	0	0	0	0	0	0	0	14410	1421	49	5		5	SI	3	164781164	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	66817	164781164	33241266	414	129901											
SI	6476	broad.mit.edu	37	chr3	164781179	164781179	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaataaagagagcagttaAaacatttcaagtgaaatcta	7	4	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164781179	C	C	164781179	1	2	151	0	1	0	0	0	0	0	0	0	14410	29	1	5		5	SI	3	164781179	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	15	164781179	33241251	415	129902											
SERPINI2	5276	broad.mit.edu	37	chr3	167167116	167167116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctaccagttgatgttgCagcttcactaccatcttcat	5	14	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167167116	A	A	167167116	3	1	151	1	0	0	0	0	1	0	0	0	14232	710	25	3	190	3	SERPINI2	3	167167116	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2385937	167167116	30855314	416	129903											
PRKCI	5584	broad.mit.edu	37	chr3	169999075	169999075	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agattgaaagatagtagaatGattactgggcttcatatttt	9	3	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169999075	C	C	169999075	1	2	151	0	1	0	0	0	0	0	0	0	12620	1305	45	4		4	PRKCI	3	169999075	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2831959	169999075	28023355	417	129904											
SKIL	6498	broad.mit.edu	37	chr3	170108878	170108878	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaactcactgaagaacagCagaatttacagaaagagctt	9	7	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170108878	T	T	170108878	4	4	151	1	0	0	0	0	0	1	0	0	14471	711	25	4	1744	4	SKIL	3	170108878	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	109803	170108878	27913552	418	129905											
SLC7A14	57709	broad.mit.edu	37	chr3	170198682	170198682	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctcactcacaggagaacaAgcttccttctcacagtcagc	6	16	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170198682	T	T	170198682	2	4	151	1	0	0	0	0	0	0	0	1	14810	59	3	5		5	SLC7A14	3	170198682	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	89804	170198682	27823748	419	129906											
FNDC3B	64778	broad.mit.edu	37	chr3	172028669	172028669	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actaccttttagagtgggatGaggtaagcttattttcatat	9	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172028669	C	C	172028669	3	2	151	1	0	0	0	0	1	0	0	0	6028	1291	45	4	1290	4	FNDC3B	3	172028669	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1829987	172028669	25993761	420	129907											
SPATA16	83893	broad.mit.edu	37	chr3	172835231	172835231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagttctgttatctttgcCtgtttctttctagttggctt	7	8	5	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172835231	A	A	172835231	3	1	151	1	0	0	0	0	1	0	0	0	15117	680	24	2	1458	2	SPATA16	3	172835231	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	806562	172835231	25187199	421	129908											
KCNMB2	10242	broad.mit.edu	37	chr3	178546087	178546087	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtacccctgcctccaggtgTacgttaacctgacttcttcc	7	15	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178546087	A	A	178546087	3	1	151	1	0	0	0	0	1	0	0	0	8145	1638	57	5	359	5	KCNMB2	3	178546087	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	5710856	178546087	19476343	422	129909											
ABCC5	10057	broad.mit.edu	37	chr3	183646660	183646660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcccaccctaagcgacCcattggcaaaggctgtctgt	11	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183646660	A	A	183646660	1	1	151	0	1	0	0	0	0	0	0	0	56	638	22	2		2	ABCC5	3	183646660	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	5100573	183646660	14375770	423	129910											
ABCF3	55324	broad.mit.edu	37	chr3	183904545	183904545	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggccatagagcttttccctCaactcctaactctgcgcttt	6	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183904545	T	T	183904545	1	4	151	0	1	0	0	0	0	0	0	0	67	841	29	4		4	ABCF3	3	183904545	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	257885	183904545	14117885	424	129911											
ALG3	10195	broad.mit.edu	37	chr3	183960548	183960548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccctagacataaacccCcaacaggaactccctatccc	4	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183960548	A	A	183960548	1	1	151	0	1	0	0	0	0	0	0	0	520	638	22	2		2	ALG3	3	183960548	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	56003	183960548	14061882	425	129912											
MAP3K13	9175	broad.mit.edu	37	chr3	185136013	185136013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctctcattcgctgagagGcatagaccttttcgatatca	8	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185136013	T	T	185136013	1	4	151	0	1	0	0	0	0	0	0	0	9339	1218	42	3		3	MAP3K13	3	185136013	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1175465	185136013	12886417	426	129913											
IGF2BP2	10644	broad.mit.edu	37	chr3	185407475	185407475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcaagaaagaccctcccGgccgggcgcggtggctcacg	13	15	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185407475	T	T	185407475	1	4	151	0	1	0	0	0	0	0	0	0	7644	1131	39	1		1	IGF2BP2	3	185407475	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	271462	185407475	12614955	427	129914											
RTP2	344892	broad.mit.edu	37	chr3	187416408	187416408	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcccgcctgggccctcgGcttggaggcttcagaggtgt	16	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187416408	T	T	187416408	3	4	151	1	0	0	0	0	1	0	0	0	13845	1203	42	3	125	3	RTP2	3	187416408	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2008933	187416408	10606022	428	129915											
TMEM207	131920	broad.mit.edu	37	chr3	190147509	190147509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacagttggactcacagCtgcttctgtccctggaaaga	9	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190147509	A	A	190147509	3	1	151	1	0	0	0	0	1	0	0	0	16255	797	28	3	128	3	TMEM207	3	190147509	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2731101	190147509	7874921	429	129916											
MUC4	4585	broad.mit.edu	37	chr3	195497124	195497124	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggataggcgtgggcattgAcccacgtgacctttagggcc	14	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	195497124	G	G	195497124	3	3	151	1	0	0	0	0	1	0	0	0	10072	275	10	5	2957	5	MUC4	3	195497124	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	5349615	195497124	2525306	430	129917											
OSTalpha	200931	broad.mit.edu	37	chr3	195955804	195955804	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagacgtaagccgggagTaagggacagcacagtccaag	14	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195955804	C	C	195955804	1	2	151	0	1	0	0	0	0	0	0	0	11394	1653	57	5		5	OSTalpha	3	195955804	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	458680	195955804	2066626	431	129918											
ZNF595	152687	broad.mit.edu	37	chr4	85778	85778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagtgtaaggtgcagaaagGagttaataatggagtttacc	13	3	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85778	T	T	85778	3	4	151	1	0	0	0	0	1	0	0	0	18152	1174	41	3	397	3	ZNF595	4	85778	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08		85778	191068498	432	129919											
GAK	2580	broad.mit.edu	37	chr4	861353	861353	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagcaccagggtccccaCggcgcgtcccttcagggcct	13	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	861353	A	A	861353	1	1	151	0	1	0	0	0	0	0	0	0	6257	551	19	3		3	GAK	4	861353	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	775575	861353	190292923	433	129920											
SPON2	10417	broad.mit.edu	37	chr4	1161519	1161519	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaacggaagccacctccCaccaacgtgtgcattcatca	6	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1161519	A	A	1161519	1	1	151	0	1	0	0	0	0	0	0	0	15201	609	21	2		2	SPON2	4	1161519	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	300166	1161519	189992757	434	129921											
HAUS3	79441	broad.mit.edu	37	chr4	2238063	2238063	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgttcttgagcagatacTgccaactgatcttgtactaa	8	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2238063	A	A	2238063	2	1	151	1	0	0	0	0	0	0	0	1	7033	1567	55	5		5	HAUS3	4	2238063	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	1076544	2238063	188916213	435	129922											
CRMP1	1400	broad.mit.edu	37	chr4	5844865	5844865	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgggacccgtgatgccCatctccaggatccgcttttg	10	16	1	1	rs146352571	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5844865	T	T	5844865	3	4	151	1	0	0	0	0	1	0	0	0	3922	594	21	4	1105	4	CRMP1	4	5844865	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3606802	5844865	185309411	436	129923											
GPR78	27201	broad.mit.edu	37	chr4	8589020	8589020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgctgaagagaacccCgcgcccagcgtccacccaca	9	19	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8589020	T	T	8589020	3	4	151	1	0	0	0	0	1	0	0	0	6775	652	23	4	1032	4	GPR78	4	8589020	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2744155	8589020	182565256	437	129924											
APBB2	323	broad.mit.edu	37	chr4	40895341	40895341	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtaggaaagttgcctgaTgcagttgttgaccgcaacac	12	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40895341	C	C	40895341	3	2	151	1	0	0	0	0	1	0	0	0	763	1464	51	5	969	5	APBB2	4	40895341	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	32306321	40895341	150258935	438	129925											
SLC30A9	10463	broad.mit.edu	37	chr4	42077832	42077832	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgttgttttcttacataActgagggttagaaaaatgct	8	4	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42077832	T	T	42077832	1	4	151	0	1	0	0	0	0	0	0	0	14676	58	2	5		5	SLC30A9	4	42077832	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1182491	42077832	149076444	439	129926											
ATP8A1	10396	broad.mit.edu	37	chr4	42596337	42596337	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtacagtgtcagcaggtaTatactctttgccttttatta	7	7	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42596337	C	C	42596337	1	2	151	0	1	0	0	0	0	0	0	0	1196	1406	49	5		5	ATP8A1	4	42596337	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	518505	42596337	148557939	440	129927											
GABRG1	2565	broad.mit.edu	37	chr4	46099313	46099313	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatttttggggccaagaccCaggttttgttcaccgttaaa	10	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46099313	T	T	46099313	4	4	151	1	0	0	0	0	0	1	0	0	6231	595	21	4	1271	4	GABRG1	4	46099313	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3502976	46099313	145054963	441	129928											
GABRB1	2560	broad.mit.edu	37	chr4	47427945	47427945	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatccccgacttgactgaTgtgaattccatagacaagtg	9	9	0	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47427945	A	A	47427945	3	1	151	1	0	0	0	0	1	0	0	0	6226	1461	51	5	1369	5	GABRB1	4	47427945	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1328632	47427945	143726331	442	129929											
ATP10D	57205	broad.mit.edu	37	chr4	47592945	47592945	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accctccccctttatttcagGagccaagtggccaccagacc	7	17	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47592945	A	A	47592945	1	1	151	0	1	0	0	0	0	0	0	0	1122	1189	41	4		4	ATP10D	4	47592945	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	165000	47592945	143561331	443	129930											
TEC	7006	broad.mit.edu	37	chr4	48173478	48173478	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaacctaaaataaaaCaaaagatggaattggtgaag	8	4	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48173478	G	G	48173478	1	3	151	0	1	0	0	0	0	0	0	0	15864	493	17	4		4	TEC	4	48173478	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	580533	48173478	142980798	444	129931											
PDGFRA	5156	broad.mit.edu	37	chr4	54347829	54347829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagacatgttaaaacaagCagccttcccaagaaatagcc	6	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54347829	A	A	54347829	1	1	151	0	1	0	0	0	0	0	0	0	11755	725	25	3		3	PDGFRA	4	54347829	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	6174351	54347829	136806447	445	129932											
PDGFRA	5156	broad.mit.edu	37	chr4	55152085	55152085	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatctgtgactttggcctGgccagagacatcatgcatga	11	9	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55152085	T	T	55152085	2	4	151	1	0	0	0	0	0	0	0	1	11755	1335	47	2		2	PDGFRA	4	55152085	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	804256	55152085	136002191	446	129933											
KDR	3791	broad.mit.edu	37	chr4	55981471	55981471	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaagtgacacgttgagatTtgaaatggacccgagacatg	11	7	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55981471	C	C	55981471	3	2	151	1	0	0	0	0	1	0	0	0	8209	1841	64	5	3712	5	KDR	4	55981471	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	829386	55981471	135172805	447	129934											
CEP135	9662	broad.mit.edu	37	chr4	56823318	56823318	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactttataaccgaaaggctAacctggaatatttaattcta	5	8	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56823318	T	T	56823318	1	4	151	0	1	0	0	0	0	0	0	0	3277	377	13	5		5	CEP135	4	56823318	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	841847	56823318	134330958	448	129935											
CEP135	9662	broad.mit.edu	37	chr4	56837457	56837457	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattgaacttatgccagaaaGaaaaggagagactgagtgat	11	4	0	6			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56837457	C	C	56837457	3	2	151	1	0	0	0	0	1	0	0	0	3277	943	33	4	1166	4	CEP135	4	56837457	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	14139	56837457	134316819	449	129936											
KIAA1211	57482	broad.mit.edu	37	chr4	57181776	57181776	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccactcccaggggccggtGtgattcccgcgggaaccaac	13	15	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57181776	A	A	57181776	3	1	151	1	0	0	0	0	1	0	0	0	8285	1377	48	4	2126	4	KIAA1211	4	57181776	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	344319	57181776	133972500	450	129937											
TECRL	253017	broad.mit.edu	37	chr4	65188442	65188442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgacctaggtctgtagCatacagtgtgacaatggagg	13	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65188442	A	A	65188442	3	1	151	1	0	0	0	0	1	0	0	0	15868	710	25	3	727	3	TECRL	4	65188442	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	8006666	65188442	125965834	451	129938											
SHROOM3	57619	broad.mit.edu	37	chr4	77660267	77660267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagacagtctatgacacccGgaggggagtctcagcagagt	13	10	2	3	rs140762344	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77660267	T	T	77660267	3	4	151	1	0	0	0	0	1	0	0	0	14408	1116	39	1	959	1	SHROOM3	4	77660267	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	12471825	77660267	113494009	452	129939											
FRAS1	80144	broad.mit.edu	37	chr4	79396827	79396827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggctgcaagcaattgtgGcactttcctacttcttccca	7	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79396827	T	T	79396827	1	4	151	0	1	0	0	0	0	0	0	0	6102	1218	42	3		3	FRAS1	4	79396827	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1736560	79396827	111757449	453	129940											
FRAS1	80144	broad.mit.edu	37	chr4	79460460	79460460	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcctaggaccgcaatcagCcagaggtaactgataagtac	9	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79460460	T	T	79460460	3	4	151	1	0	0	0	0	1	0	0	0	6102	739	26	4	11676	4	FRAS1	4	79460460	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	63633	79460460	111693816	454	129941											
MEPE	56955	broad.mit.edu	37	chr4	88766351	88766351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagagaatactcacaatGgcctgaggatgtcaatttat	8	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88766351	T	T	88766351	3	4	151	1	0	0	0	0	1	0	0	0	9571	1348	47	2	341	2	MEPE	4	88766351	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	9305891	88766351	102387925	455	129942											
MMRN1	22915	broad.mit.edu	37	chr4	90857932	90857932	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggactcaaagaaacacggAcaacataatatatcctggta	7	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90857932	G	G	90857932	3	3	151	1	0	0	0	0	1	0	0	0	9764	275	10	5	3123	5	MMRN1	4	90857932	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	2091581	90857932	100296344	456	129943											
GRID2	2895	broad.mit.edu	37	chr4	94411820	94411820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtacacgactctggctaCccgaatgatgatgggggctt	12	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94411820	A	A	94411820	3	1	151	1	0	0	0	0	1	0	0	0	6838	507	18	3	1935	3	GRID2	4	94411820	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3553888	94411820	96742456	457	129944											
UNC5C	8633	broad.mit.edu	37	chr4	96106512	96106512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccctctaactaaactaaCtaaagcccctcccattttgt	3	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96106512	A	A	96106512	1	1	151	0	1	0	0	0	0	0	0	0	17119	580	20	3		3	UNC5C	4	96106512	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1694692	96106512	95047764	458	129945											
MTTP	4547	broad.mit.edu	37	chr4	100503247	100503247	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaccagttgatccaaataAcggtgggcattttctaccag	9	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100503247	G	G	100503247	3	3	151	1	0	0	0	0	1	0	0	0	10058	43	2	5	253	5	MTTP	4	100503247	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	4396735	100503247	90651029	459	129946											
LEF1	51176	broad.mit.edu	37	chr4	109086191	109086191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaagtaacaaaacacacCtatttatacaaattgcaccc	2	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109086191	A	A	109086191	1	1	151	0	1	0	0	0	0	0	0	0	8786	696	24	2		2	LEF1	4	109086191	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	8582944	109086191	82068085	460	129947											
EGF	1950	broad.mit.edu	37	chr4	110909824	110909824	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaaggtggttatgtctgccGgtgctcagaaggctaccaag	14	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110909824	C	C	110909824	3	2	151	1	0	0	0	0	1	0	0	0	5002	1116	39	4	2763	4	EGF	4	110909824	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1823633	110909824	80244452	461	129948											
ELOVL6	79071	broad.mit.edu	37	chr4	110972668	110972668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtagttaaccacacagccCatcagcatctgagtgatctg	9	11	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110972668	A	A	110972668	3	1	151	1	0	0	0	0	1	0	0	0	5120	594	21	2	177	2	ELOVL6	4	110972668	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	62844	110972668	80181608	462	129949											
ALPK1	80216	broad.mit.edu	37	chr4	113351864	113351864	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctgtaaggaagcaatgggGaagctgtacaatttcagcac	11	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113351864	T	T	113351864	2	4	151	1	0	0	0	0	0	0	0	1	544	1161	41	3		3	ALPK1	4	113351864	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	2379196	113351864	77802412	463	129950											
ANK2	287	broad.mit.edu	37	chr4	114276332	114276332	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgactacatgaaagatgaGttccttccagctctgtcttt	7	11	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114276332	T	T	114276332	3	4	151	1	0	0	0	0	1	0	0	0	621	1020	36	3	6773	3	ANK2	4	114276332	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	924468	114276332	76877944	464	129951											
TRPC3	7222	broad.mit.edu	37	chr4	122833087	122833087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaactgggtggttttcacCctgaagatctgtttgggata	12	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122833087	A	A	122833087	3	1	151	1	0	0	0	0	1	0	0	0	16704	622	22	2	1294	2	TRPC3	4	122833087	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	8556755	122833087	68321189	465	129952											
FAT4	79633	broad.mit.edu	37	chr4	126242248	126242248	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccagatgaaggtgctaatgGagaaatagagtatgagatca	12	5	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126242248	A	A	126242248	3	1	151	1	0	0	0	0	1	0	0	0	5749	1174	41	4	4684	4	FAT4	4	126242248	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3409161	126242248	64912028	466	129953											
FAT4	79633	broad.mit.edu	37	chr4	126355443	126355443	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaacaatcaacgtcatagtAgatgatgtcaatgacaatgt	9	6	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126355443	T	T	126355443	2	4	151	1	0	0	0	0	0	0	0	1	5749	407	15	5		5	FAT4	4	126355443	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	113195	126355443	64798833	467	129954											
PCDH10	57575	broad.mit.edu	37	chr4	134073228	134073228	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcacagcacgccgagtcCcggccaagcgcgacccccag	12	19	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134073228	G	G	134073228	3	3	151	1	0	0	0	0	1	0	0	0	11601	623	22	4	1935	4	PCDH10	4	134073228	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7717785	134073228	57081048	468	129955											
PCDH18	54510	broad.mit.edu	37	chr4	138451556	138451556	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtcaatgatggtgagcaCaactgtggtattgcttacca	10	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138451556	G	G	138451556	3	3	151	1	0	0	0	0	1	0	0	0	11607	478	17	4	1736	4	PCDH18	4	138451556	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4378328	138451556	52702720	469	129956											
POU4F2	5458	broad.mit.edu	37	chr4	147561855	147561855	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cggccctcctctgaaaagatCgccgccatcgcggagaagct	11	15	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147561855	G	G	147561855	3	3	151	1	0	0	0	0	1	0	0	0	12375	874	31	4	1131	4	POU4F2	4	147561855	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	9110299	147561855	43592421	470	129957											
ACCN5	51802	broad.mit.edu	37	chr4	156760101	156760101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaaaatacctttcttaCctacatctatccatccattc	1	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156760101	A	A	156760101	1	1	151	0	1	0	0	0	0	0	0	0	132	522	18	3		3	ACCN5	4	156760101	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	9198246	156760101	34394175	471	129958											
GLRB	2743	broad.mit.edu	37	chr4	158073821	158073821	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagtaatgaccccagaacAtctcatagggataaaaagca	8	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158073821	T	T	158073821	1	4	151	0	1	0	0	0	0	0	0	0	6522	232	8	5		5	GLRB	4	158073821	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1313720	158073821	33080455	472	129959											
GRIA2	2891	broad.mit.edu	37	chr4	158224837	158224837	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttcccaacagatggcacAcatccatttgtcattcagat	6	12	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158224837	T	T	158224837	2	4	151	1	0	0	0	0	0	0	0	1	6834	146	6	5		5	GRIA2	4	158224837	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	151016	158224837	32929439	473	129960											
FSTL5	56884	broad.mit.edu	37	chr4	162306894	162306894	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaataattgtatcgtagGgtttttaggcatctccaacc	7	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162306894	T	T	162306894	1	4	151	0	1	0	0	0	0	0	0	0	6140	1247	43	2		2	FSTL5	4	162306894	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	4082057	162306894	28847382	474	129961											
SPOCK3	50859	broad.mit.edu	37	chr4	167663171	167663171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcttctttaccccttgcCgcttctgaatattgctgagc	9	12	2	2	rs138814470		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167663171	A	A	167663171	3	1	151	1	0	0	0	0	1	0	0	0	15199	652	23	1	342	1	SPOCK3	4	167663171	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5356277	167663171	23491105	475	129962											
PALLD	23022	broad.mit.edu	37	chr4	169611826	169611826	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtccgtggggcaccccctCtgcaggtccagtggtttcgg	16	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169611826	T	T	169611826	2	4	151	1	0	0	0	0	0	0	0	1	11501	912	32	4		4	PALLD	4	169611826	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1948655	169611826	21542450	476	129963											
NEK1	4750	broad.mit.edu	37	chr4	170400445	170400445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaaagtaatttttttcCttagaaaaacctgaaaggga	6	5	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170400445	T	T	170400445	1	4	151	0	1	0	0	0	0	0	0	0	10416	696	24	4		4	NEK1	4	170400445	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	788619	170400445	20753831	477	129964											
VEGFC	7424	broad.mit.edu	37	chr4	177608327	177608327	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agataaattaatattcttcaTgaggatctcttacctgcatg	6	7	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608327	A	A	177608327	1	1	151	0	1	0	0	0	0	0	0	0	17279	1479	51	5		5	VEGFC	4	177608327	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	7207882	177608327	13545949	478	129965											
FAT1	2195	broad.mit.edu	37	chr4	187629033	187629033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggtgtggcaaaattttctCcatctgtagctgtgattctc	9	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187629033	A	A	187629033	3	1	151	1	0	0	0	0	1	0	0	0	5746	855	30	3	11921	3	FAT1	4	187629033	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	10020706	187629033	3525243	479	129966											
TRIML1	339976	broad.mit.edu	37	chr4	189060757	189060757	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctcagggaggaactcacCtgtttcatctgcttagacta	8	11	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189060757	A	A	189060757	2	1	151	1	0	0	0	0	0	0	0	1	16675	668	24	2		2	TRIML1	4	189060757	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1431724	189060757	2093519	480	129967											
TRIML1	339976	broad.mit.edu	37	chr4	189068316	189068316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctttgaaaggtcagcaCgtcagagagcctgtgtgtaa	11	9	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189068316	A	A	189068316	3	1	151	1	0	0	0	0	1	0	0	0	16675	535	19	3	1219	3	TRIML1	4	189068316	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7559	189068316	2085960	481	129968											
PLEKHG4B	153478	broad.mit.edu	37	chr5	163417	163417	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccaggaaacatccccagaAgaaaatgataaagaaaacgc	7	11	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163417	G	G	163417	3	3	151	1	0	0	0	0	1	0	0	0	12167	72	3	5	2204	5	PLEKHG4B	5	163417	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08		163417	180751843	482	129969											
PLEKHG4B	153478	broad.mit.edu	37	chr5	182099	182099	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcggaagccagcctgacgTgctttctgtccctttccaga	11	13	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182099	A	A	182099	1	1	151	0	1	0	0	0	0	0	0	0	12167	1711	59	5		5	PLEKHG4B	5	182099	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	18682	182099	180733161	483	129970											
SDHA	6389	broad.mit.edu	37	chr5	240507	240507	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaattaaaccaaacgctggGgaagaatctgtcatgaatct	8	9	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240507	T	T	240507	2	4	151	1	0	0	0	0	0	0	0	1	14076	1219	43	2		2	SDHA	5	240507	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	58408	240507	180674753	484	129971											
AHRR	57491	broad.mit.edu	37	chr5	434078	434078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacagcgggaaagcacaGtgaggatggtgccaggccga	17	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	434078	T	T	434078	3	4	151	1	0	0	0	0	1	0	0	0	417	1029	36	3	1335	3	AHRR	5	434078	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	193571	434078	180481182	485	129972											
SLC6A19	340024	broad.mit.edu	37	chr5	1213663	1213663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaagggcgccaccaatgGcatcgtcttcctcttcacgc	10	15	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1213663	T	T	1213663	3	4	151	1	0	0	0	0	1	0	0	0	14796	1203	42	3	767	3	SLC6A19	5	1213663	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	779585	1213663	179701597	486	129973											
ADAMTS16	170690	broad.mit.edu	37	chr5	5319161	5319161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcaaagactacttccaCtggtgctacctggtacccca	7	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5319161	A	A	5319161	3	1	151	1	0	0	0	0	1	0	0	0	261	564	20	3	3675	3	ADAMTS16	5	5319161	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4105498	5319161	175596099	487	129974											
ADCY2	108	broad.mit.edu	37	chr5	7698566	7698566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaacgtgcaggtttgttaCataggtatacatgtactgtg	10	7	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7698566	A	A	7698566	1	1	151	0	1	0	0	0	0	0	0	0	294	493	17	3		3	ADCY2	5	7698566	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2379405	7698566	173216694	488	129975											
DNAH5	1767	broad.mit.edu	37	chr5	13824389	13824389	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattggctctttttgctgcTcccaaggtccgaagaactga	11	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13824389	C	C	13824389	2	2	151	1	0	0	0	0	0	0	0	1	4644	1538	54	5		5	DNAH5	5	13824389	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	6125823	13824389	167090871	489	129976											
DNAH5	1767	broad.mit.edu	37	chr5	13894882	13894882	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggacaatcaattgctcaaTggcagcaggtatttttgact	10	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13894882	C	C	13894882	3	2	151	1	0	0	0	0	1	0	0	0	4644	1464	51	5	11822	5	DNAH5	5	13894882	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	70493	13894882	167020378	490	129977											
FBXL7	23194	broad.mit.edu	37	chr5	15500671	15500672	+	5'UTR	DNP	GG	TT	TT													ggaggtcggccccggagcttGggggggatgtgcagctaacg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15500672	TT	TT	15500671	1	4	151	0	1	0	0	0	0	0	0	0	5781	1363	47	2		2	FBXL7	5	15500671	5'UTR	DNP	GG	TCGA-50-5049-01A-01D-1625-08	1605789	15500671	165414589	491	129978											
FBXL7	23194	broad.mit.edu	37	chr5	15928727	15928727	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatcagagatgggggcggGtggtagggaggctggctttt	20	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928727	T	T	15928727	1	4	151	0	1	0	0	0	0	0	0	0	5781	1276	44	3		3	FBXL7	5	15928727	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	428056	15928727	164986533	492	129979											
ZNF622	90441	broad.mit.edu	37	chr5	16458721	16458721	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggtcctccccttccttgTgatctggatagctactccta	9	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16458721	A	A	16458721	3	1	151	1	0	0	0	0	1	0	0	0	18173	1696	59	5	378	5	ZNF622	5	16458721	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	529994	16458721	164456539	493	129980											
ZNF622	90441	broad.mit.edu	37	chr5	16465143	16465143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccccgcccagacagggCcatcaccgtctccatccagg	8	21	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16465143	A	A	16465143	1	1	151	0	1	0	0	0	0	0	0	0	18173	754	26	3		3	ZNF622	5	16465143	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	6422	16465143	164450117	494	129981											
MYO10	4651	broad.mit.edu	37	chr5	16902613	16902613	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtccctgactgctgcggcCtccactatgtttcgaatgac	9	13	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902613	T	T	16902613	1	4	151	0	1	0	0	0	0	0	0	0	10156	696	24	4		4	MYO10	5	16902613	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	437470	16902613	164012647	495	129982											
BASP1	10409	broad.mit.edu	37	chr5	17275906	17275906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagccacggaagcgcctaGttccacacccaaggcccagg	11	17	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17275906	T	T	17275906	3	4	151	1	0	0	0	0	1	0	0	0	1322	1029	36	3	583	3	BASP1	5	17275906	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	373293	17275906	163639354	496	129983											
CDH12	1010	broad.mit.edu	37	chr5	21752217	21752217	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagccccgatgtcgaaagCctgggtatcttcctccccac	9	16	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21752217	G	G	21752217	3	3	151	1	0	0	0	0	1	0	0	0	3128	739	26	4	374	4	CDH12	5	21752217	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4476311	21752217	159163043	497	129984											
PRDM9	56979	broad.mit.edu	37	chr5	23509603	23509603	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatgccttcaaagacattTccatatacttcaccaaggaa	5	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509603	A	A	23509603	3	1	151	1	0	0	0	0	1	0	0	0	12569	1783	62	5	100	5	PRDM9	5	23509603	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1757386	23509603	157405657	498	129985											
CDH10	1008	broad.mit.edu	37	chr5	24487989	24487989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagatcatgctcttttagcCtttcattaatgaaatcccgg	6	10	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24487989	A	A	24487989	3	1	151	1	0	0	0	0	1	0	0	0	3126	681	24	2	220	2	CDH10	5	24487989	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	978386	24487989	156427271	499	129986											
CDH10	1008	broad.mit.edu	37	chr5	24537496	24537497	+	Frame_Shift_Del	DEL	AG	-	-													taaatgaacttacctacaacAgacatttcgggaacactagc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24537497	-	-	24537496	7	5	151	1	0	1	0	1	0	0	0	0	3126	175	7	0	1887	0	CDH10	5	24537496	Frame_Shift_Del	DEL	AG	TCGA-50-5049-01A-01D-1625-08	49507	24537496	156377764	500	129987											
ADAMTS12	81792	broad.mit.edu	37	chr5	33527362	33527362	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgatgtgtgtctgGggacacgagaagcagcactc	16	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33527362	C	C	33527362	2	2	151	1	0	0	0	0	0	0	0	1	257	1219	43	4		4	ADAMTS12	5	33527362	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	8989866	33527362	147387898	501	129988											
SLC45A2	51151	broad.mit.edu	37	chr5	33984644	33984644	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggccatcatcagctagGgatttatagatgtggcggcc	14	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33984644	T	T	33984644	2	4	151	1	0	0	0	0	0	0	0	1	14755	1219	43	2		2	SLC45A2	5	33984644	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	457282	33984644	146930616	502	129989											
RAD1	5810	broad.mit.edu	37	chr5	34909397	34909397	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgattacaatgaaatgcttCcatcaaatcagaatctttgg	6	8	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34909397	T	T	34909397	3	4	151	1	0	0	0	0	1	0	0	0	13086	864	30	4	225	4	RAD1	5	34909397	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	924753	34909397	146005863	503	129990											
AGXT2	64902	broad.mit.edu	37	chr5	35014095	35014095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcctgtgggtcctacctgGagtggttatgactgctgcca	13	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35014095	T	T	35014095	3	4	151	1	0	0	0	0	1	0	0	0	405	1174	41	3	471	3	AGXT2	5	35014095	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	104698	35014095	145901165	504	129991											
SPEF2	79925	broad.mit.edu	37	chr5	35644577	35644577	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttgcattttgagaaacttGaaagatttcaaaaactcaag	6	5	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35644577	T	T	35644577	4	4	151	1	0	0	0	0	0	1	0	0	15153	1291	45	3	549	3	SPEF2	5	35644577	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	630482	35644577	145270683	505	129992											
UGT3A2	167127	broad.mit.edu	37	chr5	36037999	36037999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttggcttctactcggaCcatgttttcaggctggtctc	9	11	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36037999	A	A	36037999	3	1	151	1	0	0	0	0	1	0	0	0	17090	507	18	3	384	3	UGT3A2	5	36037999	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	393422	36037999	144877261	506	129993											
SLC1A3	6507	broad.mit.edu	37	chr5	36608588	36608588	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggagagattccagcagggAgtccgtaaacgcacactttt	11	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36608588	T	T	36608588	2	4	151	1	0	0	0	0	0	0	0	1	14546	291	11	5		5	SLC1A3	5	36608588	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	570589	36608588	144306672	507	129994											
C5orf42	65250	broad.mit.edu	37	chr5	37209440	37209440	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacggcggggcgagcgaggCgggctccggaggaagctgac	20	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37209440	G	G	37209440	1	3	151	0	1	0	0	0	0	0	0	0	2324	783	27	4		4	C5orf42	5	37209440	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	600852	37209440	143705820	508	129995											
RICTOR	253260	broad.mit.edu	37	chr5	38954987	38954987	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtataataaagatgattactAtatctcttggctaatttaaa	5	4	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38954987	G	G	38954987	1	3	151	0	1	0	0	0	0	0	0	0	13467	464	16	5		5	RICTOR	5	38954987	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1745547	38954987	141960273	509	129996											
FYB	2533	broad.mit.edu	37	chr5	39203004	39203004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccctgtgactctgaagGgtcggctattgactgagaca	13	9	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39203004	T	T	39203004	3	4	151	1	0	0	0	0	1	0	0	0	6184	1232	43	2	2502	2	FYB	5	39203004	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	248017	39203004	141712256	510	129997											
ITGA2	3673	broad.mit.edu	37	chr5	52357001	52357001	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgattggctctgtaatctGagtttacttagtgtattcct	9	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52357001	C	C	52357001	1	2	151	0	1	0	0	0	0	0	0	0	7945	1305	45	4		4	ITGA2	5	52357001	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	13153997	52357001	128558259	511	129998											
SLC38A9	153129	broad.mit.edu	37	chr5	54960597	54960597	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcattgctccaatgagagaCaccaaggagaaaaggagact	10	8	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54960597	A	A	54960597	2	1	151	1	0	0	0	0	0	0	0	1	14725	465	17	3		3	SLC38A9	5	54960597	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2603596	54960597	125954663	512	129999											
RNF180	285671	broad.mit.edu	37	chr5	63496779	63496780	+	Intron	DNP	GG	TT	TT													aagtgattaaggtgagtattGgtaactccagtcttcagttt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	63496780	TT	TT	63496779	1	4	151	0	1	0	0	0	0	0	0	0	13575	1363	47	2		2	RNF180	5	63496779	Intron	DNP	GG	TCGA-50-5049-01A-01D-1625-08	8536182	63496779	117418481	513	130000											
RNF180	285671	broad.mit.edu	37	chr5	63496832	63496832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtgggcctatccacaCacatgcacacttattcttct	7	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63496832	A	A	63496832	1	1	151	0	1	0	0	0	0	0	0	0	13575	493	17	3		3	RNF180	5	63496832	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	53	63496832	117418428	514	130001											
MAST4	375449	broad.mit.edu	37	chr5	66460666	66460666	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgaggtctccagaattcaCcagcagtttccctgcctgac	9	15	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66460666	T	T	66460666	3	4	151	1	0	0	0	0	1	0	0	0	9419	507	18	4	5903	4	MAST4	5	66460666	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2963834	66460666	114454594	515	130002											
HEXB	3074	broad.mit.edu	37	chr5	74016442	74016442	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaatttaaactgcttgcGgggggatgtgtgatttaaat	11	4	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74016442	T	T	74016442	1	4	151	0	1	0	0	0	0	0	0	0	7141	1131	39	1		1	HEXB	5	74016442	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	7555776	74016442	106898818	516	130003											
VCAN	1462	broad.mit.edu	37	chr5	82815784	82815784	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactatggattcaccttgggAgaagaggatgatgaagacag	13	6	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82815784	T	T	82815784	2	4	151	1	0	0	0	0	0	0	0	1	17265	291	11	5		5	VCAN	5	82815784	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	8799342	82815784	98099476	517	130004											
TMEM161B	153396	broad.mit.edu	37	chr5	87492412	87492412	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacaatatgtttagtggcaCagtacatcattttatgttaa	6	5	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87492412	G	G	87492412	1	3	151	0	1	0	0	0	0	0	0	0	16200	493	17	4		4	TMEM161B	5	87492412	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	4676628	87492412	93422848	518	130005											
FAM81B	153643	broad.mit.edu	37	chr5	94764225	94764225	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactttagaactttggccatCaaatgaatgtgcaggtgtct	10	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94764225	A	A	94764225	1	1	151	0	1	0	0	0	0	0	0	0	5682	841	29	3		3	FAM81B	5	94764225	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	7271813	94764225	86151035	519	130006											
APC	324	broad.mit.edu	37	chr5	112111325	112111325	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttaaaaaaaaaaaaataGgtcattgcttcttgctgatc	5	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112111325	T	T	112111325	5	4	151	1	0	0	0	0	0	0	1	0	765	1014	35	2	436	2	APC	5	112111325	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	17347100	112111325	68803935	520	130007											
SRP19	6728	broad.mit.edu	37	chr5	112196947	112196947	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgatgagaaatcgcggacgcGgaaccatttcttgggcagga	14	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112196947	C	C	112196947	1	2	151	0	1	0	0	0	0	0	0	0	15272	1131	39	4		4	SRP19	5	112196947	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	85622	112196947	68718313	521	130008											
SRP19	6728	broad.mit.edu	37	chr5	112197201	112197201	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcttctccgctccgcggcCtccagaatggcctagctgat	11	16	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112197201	T	T	112197201	1	4	151	0	1	0	0	0	0	0	0	0	15272	696	24	4		4	SRP19	5	112197201	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	254	112197201	68718059	522	130009											
AQPEP	206338	broad.mit.edu	37	chr5	115338596	115338596	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacaacctttagtctggctaGatcaaagcagcagtaagtaa	8	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115338596	T	T	115338596	3	4	151	1	0	0	0	0	1	0	0	0	836	942	33	3	1927	3	AQPEP	5	115338596	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3141395	115338596	65576664	523	130010											
ZNF474	133923	broad.mit.edu	37	chr5	121487812	121487812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctattctagcctttccCcagaaacagagagtgttaat	6	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121487812	A	A	121487812	3	1	151	1	0	0	0	0	1	0	0	0	18059	623	22	2	129	2	ZNF474	5	121487812	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6149216	121487812	59427448	524	130011											
MEGF10	84466	broad.mit.edu	37	chr5	126667014	126667014	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaatggttatttcttTgaactcatgcctgagcttta	7	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126667014	G	G	126667014	3	3	151	1	0	0	0	0	1	0	0	0	9553	1821	63	5	16	5	MEGF10	5	126667014	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	5179202	126667014	54248246	525	130012											
SLC12A2	6558	broad.mit.edu	37	chr5	127446021	127446021	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactgttttagaaaccatggGctgggtaagtctggatatga	13	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127446021	C	C	127446021	1	2	151	0	1	0	0	0	0	0	0	0	14496	1218	42	4		4	SLC12A2	5	127446021	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	779007	127446021	53469239	526	130013											
FBN2	2201	broad.mit.edu	37	chr5	127653968	127653968	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacactcatcaatatctagGagaagcatttaaaatgccca	6	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127653968	T	T	127653968	1	4	151	0	1	0	0	0	0	0	0	0	5760	1189	41	3		3	FBN2	5	127653968	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	207947	127653968	53261292	527	130014											
HINT1	3094	broad.mit.edu	37	chr5	130500840	130500840	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccttgcggatgatcttcCcaaagatcgtgtcgccacca	8	13	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130500840	T	T	130500840	3	4	151	1	0	0	0	0	1	0	0	0	7178	623	22	4	333	4	HINT1	5	130500840	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2846872	130500840	50414420	528	130015											
TRPC7	57113	broad.mit.edu	37	chr5	135651233	135651233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaaagcaaggccagcaGccccgagaagagaggtgaga	14	9	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135651233	T	T	135651233	1	4	151	0	1	0	0	0	0	0	0	0	16709	986	34	3		3	TRPC7	5	135651233	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	5150393	135651233	45264027	529	130016											
NRG2	9542	broad.mit.edu	37	chr5	139231259	139231259	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgcggtggccctgcgccGctcctccaggttgtaggctg	16	14	0	0	rs141346193		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139231259	T	T	139231259	2	4	151	1	0	0	0	0	0	0	0	1	10743	1086	38	3		3	NRG2	5	139231259	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3580026	139231259	41684001	530	130017											
PCDHA6	56142	broad.mit.edu	37	chr5	140209049	140209049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccggcgttcgcgcagcCcgagtacacagtgttcgtga	13	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140209049	A	A	140209049	3	1	151	1	0	0	0	0	1	0	0	0	11622	623	22	2	1375	2	PCDHA6	5	140209049	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	977790	140209049	40706211	531	130018											
PCDHA9	9752	broad.mit.edu	37	chr5	140229634	140229634	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggagagcggcaaggtgtaCgcgctgcagccgttggacca	17	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140229634	A	A	140229634	4	1	151	1	0	0	0	0	0	1	0	0	11625	547	19	3	1556	3	PCDHA9	5	140229634	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	20585	140229634	40685626	532	130019											
PCDHA13	56136	broad.mit.edu	37	chr5	140263618	140263618	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcggtcggtgggtgcaggcCacgtggtggcgaaggtgcgc	21	10	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140263618	T	T	140263618	3	4	151	1	0	0	0	0	1	0	0	0	11617	594	21	4	1767	4	PCDHA13	5	140263618	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	33984	140263618	40651642	533	130020											
PCDHB3	56132	broad.mit.edu	37	chr5	140482259	140482259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacctgcctctcccggagGcggcaccggcccaggcccag	12	20	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140482259	T	T	140482259	3	4	151	1	0	0	0	0	1	0	0	0	11637	1203	42	3	2028	3	PCDHB3	5	140482259	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	218641	140482259	40433001	534	130021											
PCDHB4	56131	broad.mit.edu	37	chr5	140502098	140502098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaaatacacaatcagccCcaattctcattttcacattc	1	13	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140502098	A	A	140502098	3	1	151	1	0	0	0	0	1	0	0	0	11638	623	22	2	520	2	PCDHB4	5	140502098	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	19839	140502098	40413162	535	130022											
PCDHB8	56128	broad.mit.edu	37	chr5	140559505	140559505	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgcgcaccgccaggctGctgagcgagcgcgacgcggc	18	14	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140559505	A	A	140559505	2	1	151	1	0	0	0	0	0	0	0	1	11642	1306	46	4		4	PCDHB8	5	140559505	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	57407	140559505	40355755	536	130023											
PCDHB11	56125	broad.mit.edu	37	chr5	140580808	140580808	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccaacgcccaggtcaaCtactcgctactcccgcccca	7	20	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140580808	G	G	140580808	3	3	151	1	0	0	0	0	1	0	0	0	11630	564	20	4	1463	4	PCDHB11	5	140580808	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	21303	140580808	40334452	537	130024											
PCDHB11	56125	broad.mit.edu	37	chr5	140581670	140581670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccggttatccctaatatcCaggcaaaaggtcttgggaag	10	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140581670	A	A	140581670	3	1	151	1	0	0	0	0	1	0	0	0	11630	595	21	2	2325	2	PCDHB11	5	140581670	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	862	140581670	40333590	538	130025											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711649	140711649	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacattcccgaaaacaacccCagaggagcctccatcttctc	5	16	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140711649	T	T	140711649	2	4	151	1	0	0	0	0	0	0	0	1	11644	581	21	4		4	PCDHGA1	5	140711649	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	129979	140711649	40203611	539	130026											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736259	140736260	+	Missense_Mutation	DNP	GG	CT	CT													tggccgaagacaccttccagGgtgcacctctgtcctcctat							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	140736260	CT	CT	140736259	3	2	151	1	0	0	0	0	1	0	0	0	11650	1232	43	4	1494	4	PCDHGA4	5	140736259	Missense_Mutation	DNP	GG	TCGA-50-5049-01A-01D-1625-08	24610	140736259	40179001	540	130027											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744467	140744467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggaactgatggacaaaaGtatccggagctggtgttgga	15	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140744467	T	T	140744467	3	4	151	1	0	0	0	0	1	0	0	0	11651	1020	36	3	572	3	PCDHGA5	5	140744467	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	8208	140744467	40170793	541	130028											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774114	140774114	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactggcgtggagctggcGccccgctccgcagagcgtgg	16	15	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140774114	T	T	140774114	2	4	151	1	0	0	0	0	0	0	0	1	11654	1074	38	3		3	PCDHGA8	5	140774114	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	29647	140774114	40141146	542	130029											
RBM27	54439	broad.mit.edu	37	chr5	145617081	145617081	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaccctttaaaaaatggtAaatagtttctgttcttatgg	6	5	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145617081	C	C	145617081	1	2	151	0	1	0	0	0	0	0	0	0	13235	377	13	5		5	RBM27	5	145617081	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	4842967	145617081	35298179	543	130030											
PPP2R2B	5521	broad.mit.edu	37	chr5	146236146	146236146	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttgggttctcccttggctCctgtgacaaacatggggttc	11	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146236146	A	A	146236146	1	1	151	0	1	0	0	0	0	0	0	0	12486	869	30	3		3	PPP2R2B	5	146236146	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	619065	146236146	34679114	544	130031											
FBXO38	81545	broad.mit.edu	37	chr5	147806775	147806775	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctttttctataagcaGtaagtggaaaaggcaagact	8	6	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147806775	C	C	147806775	5	2	151	1	0	0	0	0	0	0	1	0	5803	1043	36	4	1972	4	FBXO38	5	147806775	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	1570629	147806775	33108485	545	130032											
PPARGC1B	133522	broad.mit.edu	37	chr5	149210212	149210212	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggtcatggaatgcccaccCtgtgttctccctgtggtcct	10	14	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149210212	G	G	149210212	1	3	151	0	1	0	0	0	0	0	0	0	12397	696	24	4		4	PPARGC1B	5	149210212	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1403437	149210212	31705048	546	130033											
CSF1R	1436	broad.mit.edu	37	chr5	149439189	149439189	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcatgagccatccaaccctGagctggctttgaagacagac	9	12	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149439189	T	T	149439189	1	4	151	0	1	0	0	0	0	0	0	0	3966	1305	45	3		3	CSF1R	5	149439189	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	228977	149439189	31476071	547	130034											
FAT2	2196	broad.mit.edu	37	chr5	150925237	150925237	+	Frame_Shift_Del	DEL	G	-	-													atggttagggttcccatgctGggatcaattttgaaaaactt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150925237	-	-	150925237	7	5	151	1	0	1	0	1	0	0	0	0	5747	1335	47	0	7658	0	FAT2	5	150925237	Frame_Shift_Del	DEL	G	TCGA-50-5049-01A-01D-1625-08	1486048	150925237	29990023	548	130035											
HAVCR1	26762	broad.mit.edu	37	chr5	156479626	156479626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgttcgaacagtcgtgacgGttggaacagttgtgacaatt	12	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156479626	A	A	156479626	3	1	151	1	0	0	0	0	1	0	0	0	7039	1261	44	4	699	4	HAVCR1	5	156479626	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	5554389	156479626	24435634	549	130036											
ITK	3702	broad.mit.edu	37	chr5	156608057	156608057	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaagagaagaacttctccCtcgaactttaaagtccgctt	6	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156608057	T	T	156608057	2	4	151	1	0	0	0	0	0	0	0	1	7979	668	24	4		4	ITK	5	156608057	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	128431	156608057	24307203	550	130037											
ADAM19	8728	broad.mit.edu	37	chr5	156915444	156915444	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgcagataatctggaggGggccggggaggaggctggga	20	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156915444	T	T	156915444	2	4	151	1	0	0	0	0	0	0	0	1	240	1219	43	2		2	ADAM19	5	156915444	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	307387	156915444	23999816	551	130038											
ADAM19	8728	broad.mit.edu	37	chr5	156997941	156997941	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaagtcttccactgagGtatgataagttcatgctgca	9	8	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156997941	A	A	156997941	3	1	151	1	0	0	0	0	1	0	0	0	240	1261	44	4	2702	4	ADAM19	5	156997941	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	82497	156997941	23917319	552	130039											
GABRA1	2554	broad.mit.edu	37	chr5	161324315	161324315	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaacagtgtcagcaaaattGaccgactgtcaagaatagcc	8	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161324315	T	T	161324315	3	4	151	1	0	0	0	0	1	0	0	0	6220	1290	45	3	1292	3	GABRA1	5	161324315	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4326374	161324315	19590945	553	130040											
SLIT3	6586	broad.mit.edu	37	chr5	168114017	168114017	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtgcatgtgtagccaTtgattgtgtccacgcactgg	14	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168114017	A	A	168114017	3	1	151	1	0	0	0	0	1	0	0	0	14855	1493	52	5	1318	5	SLIT3	5	168114017	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	6789702	168114017	12801243	554	130041											
SLIT3	6586	broad.mit.edu	37	chr5	168135007	168135007	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtaggggcaggcacagcGgtacagctccacagggtcct	15	12	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168135007	A	A	168135007	3	1	151	1	0	0	0	0	1	0	0	0	14855	1116	39	4	1797	4	SLIT3	5	168135007	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	20990	168135007	12780253	555	130042											
DOCK2	1794	broad.mit.edu	37	chr5	169116287	169116287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgcgatggggcagccggGgcttccctaaggagattgag	17	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169116287	T	T	169116287	3	4	151	1	0	0	0	0	1	0	0	0	4727	1232	43	2	827	2	DOCK2	5	169116287	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	981280	169116287	11798973	556	130043											
DOCK2	1794	broad.mit.edu	37	chr5	169477111	169477111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaggtcagtgagttgagcCcttcctttccctgtggggaa	13	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169477111	A	A	169477111	1	1	151	0	1	0	0	0	0	0	0	0	4727	638	22	2		2	DOCK2	5	169477111	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	360824	169477111	11438149	557	130044											
C5orf25	375484	broad.mit.edu	37	chr5	175763870	175763870	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aataattctacgtcactgctCaagtgtcaggtacatttttt	6	8	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175763870	G	G	175763870	2	3	151	1	0	0	0	0	0	0	0	1	2311	813	29	4		4	C5orf25	5	175763870	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	6286759	175763870	5151390	558	130045											
GPRIN1	114787	broad.mit.edu	37	chr5	176026677	176026677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcctggggggtgcaggGcttgccttttgctgggaggg	21	7	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176026677	T	T	176026677	3	4	151	1	0	0	0	0	1	0	0	0	6795	1194	42	3	2871	3	GPRIN1	5	176026677	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	262807	176026677	4888583	559	130046											
HK3	3101	broad.mit.edu	37	chr5	176314464	176314464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccttaccgctgccgtcagGggtggcccggacgaaagtgg	16	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176314464	T	T	176314464	3	4	151	1	0	0	0	0	1	0	0	0	7259	1232	43	2	1219	2	HK3	5	176314464	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	287787	176314464	4600796	560	130047											
ZNF346	23567	broad.mit.edu	37	chr5	176489059	176489059	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgattttgatgtgtttcagCtggaaagggctacccctgca	11	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176489059	T	T	176489059	3	4	151	1	0	0	0	0	1	0	0	0	17986	811	28	4	726	4	ZNF346	5	176489059	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	174595	176489059	4426201	561	130048											
DDX41	51428	broad.mit.edu	37	chr5	176940389	176940389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggcagccccagcgcgccCcacattgatggtcacaggct	12	16	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176940389	A	A	176940389	3	1	151	1	0	0	0	0	1	0	0	0	4394	623	22	2	701	2	DDX41	5	176940389	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	451330	176940389	3974871	562	130049											
ZNF354C	30832	broad.mit.edu	37	chr5	178505705	178505705	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcaagacttggcttgaaaCagaagcattgcctcatagac	8	9	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178505705	G	G	178505705	3	3	151	1	0	0	0	0	1	0	0	0	17992	478	17	4	286	4	ZNF354C	5	178505705	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1565316	178505705	2409555	563	130050											
DUSP22	56940	broad.mit.edu	37	chr6	348191	348191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggatgccctgcacaccGtgcgtgctgggagatcctgt	16	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	348191	T	T	348191	3	4	151	1	0	0	0	0	1	0	0	0	4861	1145	40	3	374	3	DUSP22	6	348191	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08		348191	170766876	564	130051											
GMDS	2762	broad.mit.edu	37	chr6	1742766	1742766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggacactatggacctcccCagtagctataacgaagtcct	8	14	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1742766	A	A	1742766	3	1	151	1	0	0	0	0	1	0	0	0	6550	594	21	2	308	2	GMDS	6	1742766	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1394575	1742766	169372301	565	130052											
F13A1	2162	broad.mit.edu	37	chr6	6251015	6251015	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatgaagtaaaaatgtccTtgacaataacaaattttaag	5	4	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6251015	A	A	6251015	1	1	151	0	1	0	0	0	0	0	0	0	5383	1624	56	5		5	F13A1	6	6251015	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	4508249	6251015	164864052	566	130053											
LY86	9450	broad.mit.edu	37	chr6	6588981	6588981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccatgaagggtttcaCagccactctcttcctctgga	7	16	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6588981	A	A	6588981	3	1	151	1	0	0	0	0	1	0	0	0	9188	478	17	3	16	3	LY86	6	6588981	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	337966	6588981	164526086	567	130054											
CAGE1	285782	broad.mit.edu	37	chr6	7342261	7342261	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgttcttgtccttatgaTatttgtctttttggtaggca	10	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7342261	C	C	7342261	1	2	151	0	1	0	0	0	0	0	0	0	2598	1421	49	5		5	CAGE1	6	7342261	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	753280	7342261	163772806	568	130055											
ELOVL2	54898	broad.mit.edu	37	chr6	10989959	10989959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtaaaaatttaagaagaGgatgactaacgttagcatat	8	4	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10989959	T	T	10989959	3	4	151	1	0	0	0	0	1	0	0	0	5116	1000	35	2	156	2	ELOVL2	6	10989959	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3647698	10989959	160125108	569	130056											
HIVEP1	3096	broad.mit.edu	37	chr6	12123583	12123583	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcccaagaggaaagtcaCccttctcgggacgggtctca	10	13	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12123583	T	T	12123583	2	4	151	1	0	0	0	0	0	0	0	1	7253	506	18	4		4	HIVEP1	6	12123583	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1133624	12123583	158991484	570	130057											
GMPR	2766	broad.mit.edu	37	chr6	16290587	16290587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttctcttgactatagctGggcggggagggaggtgaact	15	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16290587	T	T	16290587	1	4	151	0	1	0	0	0	0	0	0	0	6560	1363	47	2		2	GMPR	6	16290587	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	4167004	16290587	154824480	571	130058											
KDM1B	221656	broad.mit.edu	37	chr6	18208362	18208362	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcataattgctttttgagcaGgtgcagtgtattgattattc	9	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18208362	T	T	18208362	5	4	151	1	0	0	0	0	0	0	1	0	8193	1014	35	2	1137	2	KDM1B	6	18208362	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	1917775	18208362	152906705	572	130059											
SLC17A3	10786	broad.mit.edu	37	chr6	25862555	25862555	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagctgggattgagggcttGtgctgttgaccatggctacc	15	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25862555	A	A	25862555	3	1	151	1	0	0	0	0	1	0	0	0	14531	1377	48	4	1327	4	SLC17A3	6	25862555	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	7654193	25862555	145252512	573	130060											
BTN1A1	696	broad.mit.edu	37	chr6	26502093	26502093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggcgtcagagtctctgacGacggggagtacacgtgcttt	15	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26502093	T	T	26502093	3	4	151	1	0	0	0	0	1	0	0	0	1569	1058	37	3	361	3	BTN1A1	6	26502093	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	639538	26502093	144612974	574	130061											
ZNF184	7738	broad.mit.edu	37	chr6	27419414	27419415	+	Frame_Shift_Ins	INS	-	G	G													tcacatttattacactggtaINSgggtttttcttctgtgtgag							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27419415	G	G	27419414	7	5	151	1	0	1	1	0	0	0	0	0	17877	420	15	0	335	0	ZNF184	6	27419414	Frame_Shift_Ins	INS	-	TCGA-50-5049-01A-01D-1625-08	917321	27419414	143695653	575	130062											
GPX6	257202	broad.mit.edu	37	chr6	28473411	28473411	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagtccaaccacaaccctAgacatgagccccactgcttt	7	15	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28473411	T	T	28473411	1	4	151	0	1	0	0	0	0	0	0	0	6810	435	15	5		5	GPX6	6	28473411	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1053997	28473411	142641656	576	130063											
OR5V1	81696	broad.mit.edu	37	chr6	29323886	29323886	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaataagtcagaaagaagatGgtgaatagtaaaaactgcaa	9	3	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29323886	T	T	29323886	2	4	151	1	0	0	0	0	0	0	0	1	11278	1335	47	2		2	OR5V1	6	29323886	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	850475	29323886	141791181	577	130064											
OR11A1	26531	broad.mit.edu	37	chr6	29395248	29395248	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaatatacatgggtttgtgGagcctctgggagctaaccac	11	8	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29395248	T	T	29395248	2	4	151	1	0	0	0	0	0	0	0	1	11018	1161	41	3		3	OR11A1	6	29395248	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	71362	29395248	141719819	578	130065											
RNF39	80352	broad.mit.edu	37	chr6	30041008	30041008	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctctgaattagatgacttgGatgttgggacttcaaatcta	9	7	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30041008	A	A	30041008	3	1	151	1	0	0	0	0	1	0	0	0	13602	1174	41	4	662	4	RNF39	6	30041008	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	645760	30041008	141074059	579	130066											
MSH5	4439	broad.mit.edu	37	chr6	31712966	31712966	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcctcaattcttattcCcttcaaaagtccaagttacc	3	13	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31712966	G	G	31712966	1	3	151	0	1	0	0	0	0	0	0	0	9967	638	22	4		4	MSH5	6	31712966	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1671958	31712966	139402101	580	130067											
TNXB	7148	broad.mit.edu	37	chr6	32064730	32064730	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagtcctcgccagtgtaGccggggttacacacgcagcg	12	15	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32064730	T	T	32064730	2	4	151	1	0	0	0	0	0	0	0	1	16469	958	34	3		3	TNXB	6	32064730	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	351764	32064730	139050337	581	130068											
NOTCH4	4855	broad.mit.edu	37	chr6	32181560	32181560	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggctagggttgcaggagCcgccattgagacatggccct	15	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32181560	G	G	32181560	3	3	151	1	0	0	0	0	1	0	0	0	10646	739	26	4	3854	4	NOTCH4	6	32181560	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	116830	32181560	138933507	582	130069											
NOTCH4	4855	broad.mit.edu	37	chr6	32188027	32188027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccccatggcacggctgGctcagacacatgtcttccaa	9	15	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32188027	T	T	32188027	3	4	151	1	0	0	0	0	1	0	0	0	10646	1194	42	3	4913	3	NOTCH4	6	32188027	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6467	32188027	138927040	583	130070											
PSMB9	5698	broad.mit.edu	37	chr6	32827219	32827219	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccgggatggctcaagcggGggtgtcatctacctggtcac	15	11	4	0	rs145965388		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32827219	C	C	32827219	2	2	151	1	0	0	0	0	0	0	0	1	12790	1219	43	4		4	PSMB9	6	32827219	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	639192	32827219	138287848	584	130071											
ZBTB22	9278	broad.mit.edu	37	chr6	33283189	33283189	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtgcatgttcacgtgcCggtcccgcatgctcttgtgg	14	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33283189	G	G	33283189	3	3	151	1	0	0	0	0	1	0	0	0	17656	652	23	4	403	4	ZBTB22	6	33283189	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	455970	33283189	137831878	585	130072											
MLN	4295	broad.mit.edu	37	chr6	33768771	33768771	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccttggtatcaccggcatAggtcatagtgacctcagcct	9	12	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33768771	G	G	33768771	1	3	151	0	1	0	0	0	0	0	0	0	9724	435	15	5		5	MLN	6	33768771	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	485582	33768771	137346296	586	130073											
TCP11	6954	broad.mit.edu	37	chr6	35088395	35088395	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtctcctgctgcttgggtCagccatttggtggtgtgatt	14	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35088395	T	T	35088395	2	4	151	1	0	0	0	0	0	0	0	1	15835	813	29	4		4	TCP11	6	35088395	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1319624	35088395	136026672	587	130074											
TREML1	340205	broad.mit.edu	37	chr6	41117386	41117386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggattctgggctggccCacacgaggtccctccaccct	12	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41117386	A	A	41117386	3	1	151	1	0	0	0	0	1	0	0	0	16596	594	21	2	45	2	TREML1	6	41117386	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6028991	41117386	129997681	588	130075											
CCND3	896	broad.mit.edu	37	chr6	42016394	42016394	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccggcatccgaacagaGccagtctccacccctgcagt	10	18	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42016394	T	T	42016394	1	4	151	0	1	0	0	0	0	0	0	0	2948	986	34	3		3	CCND3	6	42016394	5'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	899008	42016394	129098673	589	130076											
C6orf154	221424	broad.mit.edu	37	chr6	43475161	43475161	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtcccgagcctcttccaGacctggctctgatcaaccct	7	17	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43475161	C	C	43475161	1	2	151	0	1	0	0	0	0	0	0	0	2362	957	33	4		4	C6orf154	6	43475161	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1458767	43475161	127639906	590	130077											
RUNX2	860	broad.mit.edu	37	chr6	45405800	45405800	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccagaagtaagtactccCctttttattgaagaaagtaa	6	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45405800	T	T	45405800	1	4	151	0	1	0	0	0	0	0	0	0	13859	638	22	4		4	RUNX2	6	45405800	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1930639	45405800	125709267	591	130078											
CD2AP	23607	broad.mit.edu	37	chr6	47544814	47544814	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaacttacttttaaagaggGggagataatccatttgataa	9	4	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47544814	C	C	47544814	3	2	151	1	0	0	0	0	1	0	0	0	3024	1232	43	4	908	4	CD2AP	6	47544814	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2139014	47544814	123570253	592	130079											
TFAP2D	83741	broad.mit.edu	37	chr6	50718983	50718983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagatcaccactgggatcctCcagacccactccaattctag	6	15	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50718983	A	A	50718983	3	1	151	1	0	0	0	0	1	0	0	0	15913	855	30	3	1111	3	TFAP2D	6	50718983	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3174169	50718983	120396084	593	130080											
TFAP2B	7021	broad.mit.edu	37	chr6	50803869	50803869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgaggtgttttgctccGtcccaggccgtttgtctctg	13	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50803869	T	T	50803869	3	4	151	1	0	0	0	0	1	0	0	0	15911	1145	40	3	711	3	TFAP2B	6	50803869	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	84886	50803869	120311198	594	130081											
C6orf142	90523	broad.mit.edu	37	chr6	54095697	54095697	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattctcacaccctcctcagTcacaacgcatgcaacaaggt	5	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54095697	A	A	54095697	3	1	151	1	0	0	0	0	1	0	0	0	2356	1664	58	5	1341	5	C6orf142	6	54095697	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	3291828	54095697	117019370	595	130082											
FAM83B	222584	broad.mit.edu	37	chr6	54805949	54805949	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggaggaagttaccaagaGaaactctccaagtggcacta	11	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54805949	T	T	54805949	3	4	151	1	0	0	0	0	1	0	0	0	5687	942	33	3	2194	3	FAM83B	6	54805949	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	710252	54805949	116309118	596	130083											
DST	667	broad.mit.edu	37	chr6	56399962	56399962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaccactttgaactcagcCgacgggggcttctgattggc	11	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56399962	A	A	56399962	2	1	151	1	0	0	0	0	0	0	0	1	4823	639	23	1		1	DST	6	56399962	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1594013	56399962	114715105	597	130084											
BAI3	577	broad.mit.edu	37	chr6	70064119	70064119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaatgtgttccccctccCcacaggttcaggatgcattt	7	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70064119	A	A	70064119	1	1	151	0	1	0	0	0	0	0	0	0	1305	638	22	2		2	BAI3	6	70064119	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	13664157	70064119	101050948	598	130085											
COL19A1	1310	broad.mit.edu	37	chr6	70852728	70852728	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttgtatgtataatgtctTtgatatttctggaattgaaa	8	2	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70852728	C	C	70852728	1	2	151	0	1	0	0	0	0	0	0	0	3708	1856	64	5		5	COL19A1	6	70852728	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	788609	70852728	100262339	599	130086											
FAM135A	57579	broad.mit.edu	37	chr6	71232106	71232106	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagggaagtttaattctgaCgggtgattgtggaaggcgta	16	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71232106	T	T	71232106	1	4	151	0	1	0	0	0	0	0	0	0	5494	551	19	4		4	FAM135A	6	71232106	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	379378	71232106	99882961	600	130087											
CD109	135228	broad.mit.edu	37	chr6	74497100	74497100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcaggccaacacatctGggagaaattcctatcacagt	7	13	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74497100	T	T	74497100	2	4	151	1	0	0	0	0	0	0	0	1	2993	1335	47	2		2	CD109	6	74497100	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3264994	74497100	96617967	601	130088											
HTR1B	3351	broad.mit.edu	37	chr6	78172306	78172306	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggcacgtcgggaacccgcGagttaatagaggtgaccgag	16	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78172306	T	T	78172306	4	4	151	1	0	0	0	0	0	1	0	0	7507	1059	37	3	361	3	HTR1B	6	78172306	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3675206	78172306	92942761	602	130089											
GABRR2	2570	broad.mit.edu	37	chr6	89974338	89974338	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgatacctgcaacaccCggccttagttgggctgctga	12	12	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89974338	G	G	89974338	1	3	151	0	1	0	0	0	0	0	0	0	6237	667	23	4		4	GABRR2	6	89974338	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	11802032	89974338	81140729	603	130090											
EPHA7	2045	broad.mit.edu	37	chr6	94120573	94120574	+	Missense_Mutation	DNP	GG	TT	TT													cttcatctttctttcaccaaGgtcaccttgggtaaaacttt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	94120574	TT	TT	94120573	3	4	151	1	0	0	0	0	1	0	0	0	5214	1000	35	2	2578	2	EPHA7	6	94120573	Missense_Mutation	DNP	GG	TCGA-50-5049-01A-01D-1625-08	4146235	94120573	76994494	604	130091											
DDO	8528	broad.mit.edu	37	chr6	110714247	110714247	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagcatcgggaaagaatctCtctgctattttctgcatccg	8	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110714247	A	A	110714247	4	1	151	1	0	0	0	0	0	1	0	0	4367	922	32	3	272	3	DDO	6	110714247	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	16593674	110714247	60400820	605	130092											
FYN	2534	broad.mit.edu	37	chr6	111983199	111983199	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccccggggatccaggcccTgaccgccgcacttgcagatc	11	18	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111983199	A	A	111983199	1	1	151	0	1	0	0	0	0	0	0	0	6186	1595	55	5		5	FYN	6	111983199	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1268952	111983199	59131868	606	130093											
RFX6	222546	broad.mit.edu	37	chr6	117237066	117237066	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcaacattgagcatactgCttggtacgtaataggatctt	8	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117237066	G	G	117237066	1	3	151	0	1	0	0	0	0	0	0	0	13375	812	28	4		4	RFX6	6	117237066	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	5253867	117237066	53878001	607	130094											
DCBLD1	285761	broad.mit.edu	37	chr6	117825053	117825053	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacagtaccaaaggggaaaaGactgattctgaggttgggag	14	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117825053	T	T	117825053	3	4	151	1	0	0	0	0	1	0	0	0	4313	942	33	3	242	3	DCBLD1	6	117825053	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	587987	117825053	53290014	608	130095											
LAMA2	3908	broad.mit.edu	37	chr6	129775235	129775235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttattgaaaaacactctGctggtctcctctttaaaggt	7	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129775235	T	T	129775235	1	4	151	0	1	0	0	0	0	0	0	0	8678	1334	46	3		3	LAMA2	6	129775235	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	11950182	129775235	41339832	609	130096											
L3MBTL3	84456	broad.mit.edu	37	chr6	130372452	130372452	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccagtgaaagtagaaggGcttcagttctgtgagaactg	13	6	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130372452	T	T	130372452	2	4	151	1	0	0	0	0	0	0	0	1	8665	1190	42	3		3	L3MBTL3	6	130372452	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	597217	130372452	40742615	610	130097											
SAMD3	154075	broad.mit.edu	37	chr6	130465706	130465706	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctacttcgttttccttttCtttcaaagaaggaaaataag	5	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130465706	A	A	130465706	4	1	151	1	0	0	0	0	0	1	0	0	13931	922	32	3	44	3	SAMD3	6	130465706	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	93254	130465706	40649361	611	130098											
ENPP3	5169	broad.mit.edu	37	chr6	131979423	131979423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttgaggtaaatgtagCtatccaaaacaatggacaaa	8	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131979423	A	A	131979423	1	1	151	0	1	0	0	0	0	0	0	0	5173	812	28	3		3	ENPP3	6	131979423	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1513717	131979423	39135644	612	130099											
ENPP3	5169	broad.mit.edu	37	chr6	131992505	131992505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtaagacaggccaaagacCagaactgaccacataaacag	9	10	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131992505	A	A	131992505	1	1	151	0	1	0	0	0	0	0	0	0	5173	609	21	2		2	ENPP3	6	131992505	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	13082	131992505	39122562	613	130100											
AHI1	54806	broad.mit.edu	37	chr6	135679257	135679257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttttaacaacgtagcaaCagactgtcttaccgttggtg	8	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135679257	A	A	135679257	1	1	151	0	1	0	0	0	0	0	0	0	413	493	17	3		3	AHI1	6	135679257	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3686752	135679257	35435810	614	130101											
CITED2	10370	broad.mit.edu	37	chr6	139695015	139695015	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccatgcggtgggcagggtGatggtgcagcccattggtgc	18	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139695015	A	A	139695015	3	1	151	1	0	0	0	0	1	0	0	0	3471	1290	45	4	749	4	CITED2	6	139695015	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4015758	139695015	31420052	615	130102											
CITED2	10370	broad.mit.edu	37	chr6	139695043	139695043	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcccattggtgccgtcgggGaagcgcccgtggttcatggc	16	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139695043	A	A	139695043	2	1	151	1	0	0	0	0	0	0	0	1	3471	1165	41	4		4	CITED2	6	139695043	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	28	139695043	31420024	616	130103											
SF3B5	83443	broad.mit.edu	37	chr6	144416503	144416503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagaaggtcgaagtggccCatgtaggagcagtacgagtc	15	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144416503	A	A	144416503	3	1	151	1	0	0	0	0	1	0	0	0	14267	594	21	2	132	2	SF3B5	6	144416503	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4721460	144416503	26698564	617	130104											
FBXO30	84085	broad.mit.edu	37	chr6	146126130	146126130	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatctccccaaccattgtaCttgtagctaatattgcagat	5	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146126130	G	G	146126130	3	3	151	1	0	0	0	0	1	0	0	0	5797	565	20	4	833	4	FBXO30	6	146126130	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1709627	146126130	24988937	618	130105											
GRM1	2911	broad.mit.edu	37	chr6	146720217	146720217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagtgactaaaaccaatcGtattgcacgcatcctggctg	8	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146720217	T	T	146720217	3	4	151	1	0	0	0	0	1	0	0	0	6862	1145	40	3	2068	3	GRM1	6	146720217	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	594087	146720217	24394850	619	130106											
STXBP5	134957	broad.mit.edu	37	chr6	147646094	147646094	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatgttttcttttattttaGagttaaaaactcaccactta	3	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147646094	T	T	147646094	5	4	151	1	0	0	0	0	0	0	1	0	15474	956	33	3	1868	3	STXBP5	6	147646094	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	925877	147646094	23468973	620	130107											
MTHFD1L	25902	broad.mit.edu	37	chr6	151247379	151247379	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccaaagtacgtttgtccGtgctagaaaggttaaaggat	11	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151247379	T	T	151247379	3	4	151	1	0	0	0	0	1	0	0	0	10022	1145	40	3	1246	3	MTHFD1L	6	151247379	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3601285	151247379	19867688	621	130108											
SYNE1	23345	broad.mit.edu	37	chr6	152720814	152720814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggagcacaactggctcaCggcttcatgtttctttatca	8	10	4	0	rs146099481	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152720814	A	A	152720814	3	1	151	1	0	0	0	0	1	0	0	0	15564	536	19	3	19688	3	SYNE1	6	152720814	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1473435	152720814	18394253	622	130109											
NOX3	50508	broad.mit.edu	37	chr6	155728350	155728350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttaagcctgtaatcacGtcagtattttcgtcccagtg	8	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155728350	T	T	155728350	3	4	151	1	0	0	0	0	1	0	0	0	10652	1136	40	3	220	3	NOX3	6	155728350	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3007536	155728350	15386717	623	130110											
C6orf35	729515	broad.mit.edu	37	chr6	157744439	157744439	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcacctcaccacagcacatCttacctttaaccaggaaaag	5	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157744439	A	A	157744439	1	1	151	0	1	0	0	0	0	0	0	0	2386	928	32	3		3	C6orf35	6	157744439	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2016089	157744439	13370628	624	130111											
IGF2R	3482	broad.mit.edu	37	chr6	160480035	160480035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgaagagctcaagaattGgaagccagcaaggccagtcg	12	9	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160480035	T	T	160480035	3	4	151	1	0	0	0	0	1	0	0	0	7646	1357	47	2	3082	2	IGF2R	6	160480035	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2735596	160480035	10635032	625	130112											
PLG	5340	broad.mit.edu	37	chr6	161152045	161152045	+	Intron	DEL	C	-	-													tgggtgcccctgaatattctCccacctcttgtgacctgtat							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	161152045	-	-	161152045	6	5	151	0	1	1	0	1	0	0	0	0	12181	870	30	0		0	PLG	6	161152045	Intron	DEL	C	TCGA-50-5049-01A-01D-1625-08	672010	161152045	9963022	626	130113											
PDE10A	10846	broad.mit.edu	37	chr6	165801923	165801923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtcatgacacagacacGcaatcagcagtcctttgcgc	9	14	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165801923	T	T	165801923	3	4	151	1	0	0	0	0	1	0	0	0	11724	1087	38	3	717	3	PDE10A	6	165801923	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4649878	165801923	5313144	627	130114											
UNC93A	54346	broad.mit.edu	37	chr6	167717803	167717803	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgattcaaggtctcaacctCcaagtaacttccaactcaca	4	13	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167717803	A	A	167717803	1	1	151	0	1	0	0	0	0	0	0	0	17122	870	30	3		3	UNC93A	6	167717803	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1915880	167717803	3397264	628	130115											
TTLL2	83887	broad.mit.edu	37	chr6	167753613	167753613	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaacctcatttgatggcGgaagatgaaccttcaggggc	11	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167753613	A	A	167753613	2	1	151	1	0	0	0	0	0	0	0	1	16853	1103	39	4		4	TTLL2	6	167753613	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	35810	167753613	3361454	629	130116											
FTSJ2	29960	broad.mit.edu	37	chr7	2279214	2279214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaactctccaccttcgcaGccttcacaaatgggtccctg	8	15	2	0	rs150856697		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2279214	A	A	2279214	3	1	151	1	0	0	0	0	1	0	0	0	6148	971	34	4	611	4	FTSJ2	7	2279214	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08		2279214	156859449	630	130117											
EIF2AK1	27102	broad.mit.edu	37	chr7	6089666	6089666	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccccattttgataaacgtCtggcaaagtactataaaaag	7	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6089666	G	G	6089666	3	3	151	1	0	0	0	0	1	0	0	0	5036	912	32	4	1656	4	EIF2AK1	7	6089666	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3810452	6089666	153048997	631	130118											
DGKB	1607	broad.mit.edu	37	chr7	14613905	14613905	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctttctcatctttgtcatTaggtatgacttcaaacttcc	4	11	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14613905	C	C	14613905	3	2	151	1	0	0	0	0	1	0	0	0	4506	1754	61	5	752	5	DGKB	7	14613905	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	8524239	14613905	144524758	632	130119											
SOSTDC1	25928	broad.mit.edu	37	chr7	16502099	16502099	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagaaaacagcagtggcaGgcttgagtcttccaagcaat	12	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16502099	T	T	16502099	1	4	151	0	1	0	0	0	0	0	0	0	15053	1015	35	2		2	SOSTDC1	7	16502099	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	1888194	16502099	142636564	633	130120											
HDAC9	9734	broad.mit.edu	37	chr7	18869149	18869149	+	Frame_Shift_Del	DEL	G	-	-													gagagaccaactaaatataaGcaagatattgattgtagatc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18869149	-	-	18869149	7	5	151	1	0	1	0	1	0	0	0	0	7081	971	34	0	2565	0	HDAC9	7	18869149	Frame_Shift_Del	DEL	G	TCGA-50-5049-01A-01D-1625-08	2367050	18869149	140269514	634	130121											
TMEM196	256130	broad.mit.edu	37	chr7	19765051	19765051	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatctgattcctcaaattgtGatctaaagtttcaagttgat	6	6	4	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19765051	T	T	19765051	1	4	151	0	1	0	0	0	0	0	0	0	16241	1305	45	3		3	TMEM196	7	19765051	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	895902	19765051	139373612	635	130122											
ABCB5	340273	broad.mit.edu	37	chr7	20738036	20738036	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattttatttttagataagtCttcctgaagtctctctatta	4	6	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20738036	A	A	20738036	3	1	151	1	0	0	0	0	1	0	0	0	44	913	32	3	2120	3	ABCB5	7	20738036	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	972985	20738036	138400627	636	130123											
ABCB5	340273	broad.mit.edu	37	chr7	20793064	20793064	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagctattgcaagggctcttCtccaaaaacccaaaatttta	5	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20793064	A	A	20793064	3	1	151	1	0	0	0	0	1	0	0	0	44	913	32	3	3654	3	ABCB5	7	20793064	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	55028	20793064	138345599	637	130124											
DNAH11	8701	broad.mit.edu	37	chr7	21775528	21775528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggcgggcacatgcagcCcaaaagactaataatgcctt	9	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21775528	A	A	21775528	1	1	151	0	1	0	0	0	0	0	0	0	4639	638	22	2		2	DNAH11	7	21775528	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	982464	21775528	137363135	638	130125											
FAM126A	84668	broad.mit.edu	37	chr7	22985289	22985289	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attggaagttcagttctttcTgaaacgtaaataagcttttc	7	6	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22985289	A	A	22985289	2	1	151	1	0	0	0	0	0	0	0	1	5475	1567	55	5		5	FAM126A	7	22985289	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	1209761	22985289	136153374	639	130126											
C7orf31	136895	broad.mit.edu	37	chr7	25194712	25194712	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgcgggctttaatgccCgtgtagaggtcctcaggtga	16	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25194712	G	G	25194712	2	3	151	1	0	0	0	0	0	0	0	1	2412	639	23	4		4	C7orf31	7	25194712	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2209423	25194712	133943951	640	130127											
CPVL	54504	broad.mit.edu	37	chr7	29070193	29070193	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcccaagcatcttcctacCtgatggaagtcacccgcttg	8	15	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29070193	G	G	29070193	3	3	151	1	0	0	0	0	1	0	0	0	3867	695	24	4	118	4	CPVL	7	29070193	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3875481	29070193	130068470	641	130128											
PDE1C	5137	broad.mit.edu	37	chr7	31913022	31913022	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaccacttgtccacatcCtgcaggacagggtggggaga	14	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31913022	A	A	31913022	5	1	151	1	0	0	0	0	0	0	1	0	11729	695	24	2	1460	2	PDE1C	7	31913022	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	2842829	31913022	127225641	642	130129											
PDE1C	5137	broad.mit.edu	37	chr7	32209517	32209517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcttctccttgacattcCctgtgagcccatcgatgagg	10	12	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32209517	A	A	32209517	3	1	151	1	0	0	0	0	1	0	0	0	11729	638	22	2		2	PDE1C	7	32209517	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	296495	32209517	126929146	643	130130											
HERPUD2	64224	broad.mit.edu	37	chr7	35673874	35673874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgttggtcccataccgtgCtgggaaaatctcagtatctt	9	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35673874	A	A	35673874	1	1	151	0	1	0	0	0	0	0	0	0	7131	812	28	3		3	HERPUD2	7	35673874	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3464357	35673874	123464789	644	130131											
ANLN	54443	broad.mit.edu	37	chr7	36463494	36463494	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatggtagccacaccattaGcaagtacttcaaactctctt	5	11	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36463494	C	C	36463494	3	2	151	1	0	0	0	0	1	0	0	0	694	971	34	4	2603	4	ANLN	7	36463494	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	789620	36463494	122675169	645	130132											
ELMO1	9844	broad.mit.edu	37	chr7	37172865	37172865	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaacaaaatcatgataAggtgaattcttcagcagatt	7	5	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37172865	T	T	37172865	1	4	151	0	1	0	0	0	0	0	0	0	5107	87	3	5		5	ELMO1	7	37172865	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	709371	37172865	121965798	646	130133											
TXNDC3	51314	broad.mit.edu	37	chr7	37890007	37890007	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaataatcaaagcctgtggGatgagatgttgcagaacaaa	10	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37890007	A	A	37890007	3	1	151	1	0	0	0	0	1	0	0	0	16924	1174	41	4	67	4	TXNDC3	7	37890007	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	717142	37890007	121248656	647	130134											
AMPH	273	broad.mit.edu	37	chr7	38530667	38530667	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacctttatgtcaggaaattGccccaggtaggtatccagtg	10	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38530667	C	C	38530667	3	2	151	1	0	0	0	0	1	0	0	0	588	1328	46	4	1776	4	AMPH	7	38530667	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	640660	38530667	120607996	648	130135											
GLI3	2737	broad.mit.edu	37	chr7	42005086	42005086	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggtggacgaccatgccGttgcagaacccaaaggcgcg	15	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42005086	A	A	42005086	2	1	151	1	0	0	0	0	0	0	0	1	6503	1136	40	4		4	GLI3	7	42005086	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3474419	42005086	117133577	649	130136											
URGCP	55665	broad.mit.edu	37	chr7	43958550	43958550	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actccccctgtgccaagctcTacaacccagagaacatctac	5	17	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43958550	A	A	43958550	1	1	151	0	1	0	0	0	0	0	0	0	17152	1537	53	5		5	URGCP	7	43958550	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1953464	43958550	115180113	650	130137											
SPDYE1	285955	broad.mit.edu	37	chr7	44046939	44046939	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccacttcctgtatgggaaGaaccgctctcgcataccctt	7	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44046939	A	A	44046939	2	1	151	1	0	0	0	0	0	0	0	1	15145	933	33	4		4	SPDYE1	7	44046939	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	88389	44046939	115091724	651	130138											
CAMK2B	816	broad.mit.edu	37	chr7	44283142	44283142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggctgcagggaggtgacCggcacaagggtgcatgttgt	17	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44283142	A	A	44283142	1	1	151	0	1	0	0	0	0	0	0	0	2626	667	23	1		1	CAMK2B	7	44283142	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	236203	44283142	114855521	652	130139											
ZMIZ2	83637	broad.mit.edu	37	chr7	44801092	44801092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctgaccttccctgtgcgcGatggggtggtcctggagccc	16	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44801092	T	T	44801092	3	4	151	1	0	0	0	0	1	0	0	0	17823	1058	37	3	1319	3	ZMIZ2	7	44801092	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	517950	44801092	114337571	653	130140											
MYO1G	64005	broad.mit.edu	37	chr7	45004145	45004145	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagatggaggggagggggcGctgcttgggattgagtcatg	20	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45004145	A	A	45004145	1	1	151	0	1	0	0	0	0	0	0	0	10168	1102	38	4		4	MYO1G	7	45004145	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	203053	45004145	114134518	654	130141											
IGFBP3	3486	broad.mit.edu	37	chr7	45956766	45956766	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggctctgagtacccaggcTtggcaggtcttgccctcctc	12	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45956766	A	A	45956766	1	1	151	0	1	0	0	0	0	0	0	0	7650	1624	56	5		5	IGFBP3	7	45956766	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	952621	45956766	113181897	655	130142											
PKD1L1	168507	broad.mit.edu	37	chr7	47930110	47930110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaacaaacaccggtgagCtgagctgtgctgaatacagg	14	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47930110	A	A	47930110	1	1	151	0	1	0	0	0	0	0	0	0	12059	812	28	3		3	PKD1L1	7	47930110	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1973344	47930110	111208553	656	130143											
SUN3	256979	broad.mit.edu	37	chr7	48068523	48068523	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcccttcttgcctttgTttttccactcatgatcccct	6	15	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48068523	A	A	48068523	3	1	151	1	0	0	0	0	1	0	0	0	15511	1725	60	5	1100	5	SUN3	7	48068523	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	138413	48068523	111070140	657	130144											
UPP1	7378	broad.mit.edu	37	chr7	48142961	48142961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagctgctgtactatgcccGgtgctccaacgtcactatca	8	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48142961	T	T	48142961	3	4	151	1	0	0	0	0	1	0	0	0	17138	1116	39	1	403	1	UPP1	7	48142961	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	74438	48142961	110995702	658	130145											
ABCA13	154664	broad.mit.edu	37	chr7	48258959	48258959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtttaaagtttgtctaGgttccaaactgcagctgacc	8	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48258959	T	T	48258959	3	4	151	1	0	0	0	0	1	0	0	0	31	1000	35	2	139	2	ABCA13	7	48258959	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	115998	48258959	110879704	659	130146											
ABCA13	154664	broad.mit.edu	37	chr7	48450284	48450284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacgaggcaggtaaggagtGcaaccattctatctcactga	10	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48450284	T	T	48450284	1	4	151	0	1	0	0	0	0	0	0	0	31	1334	46	3		3	ABCA13	7	48450284	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	191325	48450284	110688379	660	130147											
VWC2	375567	broad.mit.edu	37	chr7	49842473	49842473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgacggggtgcacctcCcaccctgatgcacaacccat	10	15	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49842473	A	A	49842473	1	1	151	0	1	0	0	0	0	0	0	0	17370	638	22	2		2	VWC2	7	49842473	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1392189	49842473	109296190	661	130148											
POM121L12	285877	broad.mit.edu	37	chr7	53103455	53103455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggccccgacgccctggcgGctcccatgagcaggtcaccc	12	18	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103455	T	T	53103455	3	4	151	1	0	0	0	0	1	0	0	0	12336	1203	42	3	93	3	POM121L12	7	53103455	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3260982	53103455	106035208	662	130149											
ZNF479	90827	broad.mit.edu	37	chr7	57193628	57193628	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcagaaactcttttcatCaaagcacagctccccagacc	4	15	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57193628	G	G	57193628	1	3	151	0	1	0	0	0	0	0	0	0	18060	841	29	4		4	ZNF479	7	57193628	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	4090173	57193628	101945035	663	130150											
CD36	948	broad.mit.edu	37	chr7	80108053	80108053	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctaataaaatgtaacacCatttattttcctcatttgaa	2	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80108053	T	T	80108053	1	4	151	0	1	0	0	0	0	0	0	0	3037	609	21	4		4	CD36	7	80108053	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	22914425	80108053	79030610	664	130151											
CD36	948	broad.mit.edu	37	chr7	80108333	80108333	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctagaacaatattttggtGagaataagtatgtattattt	7	3	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80108333	T	T	80108333	1	4	151	0	1	0	0	0	0	0	0	0	3037	1305	45	3		3	CD36	7	80108333	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	280	80108333	79030330	665	130152											
CD36	948	broad.mit.edu	37	chr7	80300263	80300263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgtaagttcaggttcctGgaatgcagctcttttttctc	9	8	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80300263	T	T	80300263	1	4	151	0	1	0	0	0	0	0	0	0	3037	1363	47	2		2	CD36	7	80300263	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	191930	80300263	78838400	666	130153											
HGF	3082	broad.mit.edu	37	chr7	81334734	81334734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgatccaatcttttcaGccccagcacatatttcagac	5	14	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81334734	T	T	81334734	3	4	151	1	0	0	0	0	1	0	0	0	7152	971	34	3	212	3	HGF	7	81334734	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1034471	81334734	77803929	667	130154											
HGF	3082	broad.mit.edu	37	chr7	81334976	81334976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttacatccagtgtagccCcagccataaacactgcaact	6	14	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81334976	A	A	81334976	3	1	151	1	0	0	0	0	1	0	0	0	7152	624	22	2	347	2	HGF	7	81334976	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	242	81334976	77803687	668	130155											
CACNA2D1	781	broad.mit.edu	37	chr7	81588610	81588610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagacattgttatcaaagCagacatcaggcccttttcgg	8	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81588610	A	A	81588610	3	1	151	1	0	0	0	0	1	0	0	0	2574	710	25	3	143	3	CACNA2D1	7	81588610	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	253634	81588610	77550053	669	130156											
CACNA2D1	781	broad.mit.edu	37	chr7	81589101	81589101	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctttgctctcaaccattAtgaatattaagttggtgttc	6	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81589101	G	G	81589101	3	3	151	1	0	0	0	0	1	0	0	0	2574	449	16	5	276	5	CACNA2D1	7	81589101	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	491	81589101	77549562	670	130157											
CACNA2D1	781	broad.mit.edu	37	chr7	81978995	81978995	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagaaaagattatgttctaTcagatctctggcaaataaaa	6	6	4	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81978995	C	C	81978995	1	2	151	0	1	0	0	0	0	0	0	0	2574	1450	50	5		5	CACNA2D1	7	81978995	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	389894	81978995	77159668	671	130158											
PCLO	27445	broad.mit.edu	37	chr7	82387850	82387850	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatagtcttgatgtgaggCtatttagagcagtttctata	9	5	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82387850	A	A	82387850	1	1	151	0	1	0	0	0	0	0	0	0	11677	812	28	3		3	PCLO	7	82387850	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	408855	82387850	76750813	672	130159											
PCLO	27445	broad.mit.edu	37	chr7	82544780	82544780	+	Frame_Shift_Del	DEL	T	-	-													gctggcagttgttttgctgcTtgtttttcaagtgtgagtct							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82544780	-	-	82544780	7	5	151	1	0	1	0	1	0	0	0	0	11677	1606	56	0	2999	0	PCLO	7	82544780	Frame_Shift_Del	DEL	T	TCGA-50-5049-01A-01D-1625-08	156930	82544780	76593883	673	130160											
ZNF804B	219578	broad.mit.edu	37	chr7	88956638	88956638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatttatagtacctttttGgtttttcttctttttcaaga	4	5	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88956638	T	T	88956638	1	4	151	0	1	0	0	0	0	0	0	0	18300	1363	47	2		2	ZNF804B	7	88956638	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	6411858	88956638	70182025	674	130161											
ZNF804B	219578	broad.mit.edu	37	chr7	88965207	88965207	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caattcaacttgcaccatcaGgctgtaacagacaagcattg	7	11	2	1	rs141578416		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88965207	C	C	88965207	3	2	151	1	0	0	0	0	1	0	0	0	18300	1000	35	4	2925	4	ZNF804B	7	88965207	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	8569	88965207	70173456	675	130162											
GTPBP10	85865	broad.mit.edu	37	chr7	89984595	89984595	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttcagagagagagttcttGaatagaaaataaatgtaaat	8	3	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89984595	T	T	89984595	1	4	151	0	1	0	0	0	0	0	0	0	6944	1305	45	3		3	GTPBP10	7	89984595	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1019388	89984595	69154068	676	130163											
AKAP9	10142	broad.mit.edu	37	chr7	91687422	91687422	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgataaactaaaaagaactTtttaatgtattagaaaattg	5	2	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91687422	C	C	91687422	1	2	151	0	1	0	0	0	0	0	0	0	459	1856	64	5		5	AKAP9	7	91687422	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1702827	91687422	67451241	677	130164											
AKAP9	10142	broad.mit.edu	37	chr7	91687664	91687664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctattttccattttattcAtaaaagaaacgggcatatat	4	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91687664	G	G	91687664	1	3	151	0	1	0	0	0	0	0	0	0	459	232	8	5		5	AKAP9	7	91687664	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	242	91687664	67450999	678	130165											
HEPACAM2	253012	broad.mit.edu	37	chr7	92838067	92838067	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcctcctaatccaggagtAggtgttggggggatgagaat	15	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92838067	T	T	92838067	3	4	151	1	0	0	0	0	1	0	0	0	7120	420	15	5	578	5	HEPACAM2	7	92838067	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1150403	92838067	66300596	679	130166											
CCDC132	55610	broad.mit.edu	37	chr7	92905437	92905437	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaatttatttattttaAtaatgtgaaattatgttgtg	7	0	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92905437	G	G	92905437	1	3	151	0	1	0	0	0	0	0	0	0	2793	116	4	5		5	CCDC132	7	92905437	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	67370	92905437	66233226	680	130167											
CALCR	799	broad.mit.edu	37	chr7	93107034	93107034	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtggatttaactaaatgaGaagattgatcccaagacgat	9	5	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93107034	T	T	93107034	1	4	151	0	1	0	0	0	0	0	0	0	2605	957	33	3		3	CALCR	7	93107034	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	201597	93107034	66031629	681	130168											
TFPI2	7980	broad.mit.edu	37	chr7	93516543	93516543	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttatttataaagtttatCtaaaggtggaataagaaaac	7	2	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93516543	G	G	93516543	1	3	151	0	1	0	0	0	0	0	0	0	15932	928	32	4		4	TFPI2	7	93516543	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	409509	93516543	65622120	682	130169											
DYNC1I1	1780	broad.mit.edu	37	chr7	95668813	95668813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctggaaacagttgtccCtaaagcctcttccaggcaac	7	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95668813	A	A	95668813	1	1	151	0	1	0	0	0	0	0	0	0	4882	696	24	2		2	DYNC1I1	7	95668813	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2152270	95668813	63469850	683	130170											
PTCD1	26024	broad.mit.edu	37	chr7	99063829	99063829	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtagggaatgcacgcccCatccaggggcgtagagcaga	16	10	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99063829	A	A	99063829	1	1	151	0	1	0	0	0	0	0	0	0	12833	609	21	2		2	PTCD1	7	99063829	5'Flank	SNP	C	TCGA-50-5049-01A-01D-1625-08	3395016	99063829	60074834	684	130171											
C7orf51	222950	broad.mit.edu	37	chr7	100086049	100086049	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaagtggaggaggcctggcTgggccccctcttgggggtgg	20	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100086049	C	C	100086049	2	2	151	1	0	0	0	0	0	0	0	1	2425	1567	55	5		5	C7orf51	7	100086049	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	1022220	100086049	59052614	685	130172											
ZAN	7455	broad.mit.edu	37	chr7	100352909	100352909	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcttcgtgcaagagccCcaggcctagctgtgggcccc	12	16	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100352909	A	A	100352909	3	1	151	1	0	0	0	0	1	0	0	0	17640	623	22	2	3239	2	ZAN	7	100352909	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	266860	100352909	58785754	686	130173											
ZAN	7455	broad.mit.edu	37	chr7	100383577	100383577	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcgtgagccgccgcgcccAgccccctcctcactctcttt	9	20	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100383577	T	T	100383577	1	4	151	0	1	0	0	0	0	0	0	0	17640	203	7	5		5	ZAN	7	100383577	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	30668	100383577	58755086	687	130174											
SLC12A9	56996	broad.mit.edu	37	chr7	100452392	100452392	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctactgtatcctccaacatcGatggactggggtctggcctg	11	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100452392	T	T	100452392	1	4	151	0	1	0	0	0	0	0	0	0	14503	1073	37	3		3	SLC12A9	7	100452392	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	68815	100452392	58686271	688	130175											
MUC17	140453	broad.mit.edu	37	chr7	100677732	100677732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcctgttgactccaacaCtcctttgaccacttctactg	4	15	1	2	rs150736052		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100677732	A	A	100677732	3	1	151	1	0	0	0	0	1	0	0	0	10068	565	20	3	3045	3	MUC17	7	100677732	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	225340	100677732	58460931	689	130176											
MUC17	140453	broad.mit.edu	37	chr7	100684017	100684017	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtgaaggaagcactccatTaacaggtgtgcctgtcagca	11	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100684017	A	A	100684017	4	1	151	1	0	0	0	0	0	1	0	0	10068	1764	61	5	9330	5	MUC17	7	100684017	Nonsense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	6285	100684017	58454646	690	130177											
PLOD3	8985	broad.mit.edu	37	chr7	100850973	100850973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggatgtccacggtgggCacattctcgtagcctccagc	12	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100850973	A	A	100850973	2	1	151	1	0	0	0	0	0	0	0	1	12198	697	25	3		3	PLOD3	7	100850973	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	166956	100850973	58287690	691	130178											
RELN	5649	broad.mit.edu	37	chr7	103131032	103131032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaagctctgcctcacaCtgtcagttgttttcagctca	7	11	5	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103131032	A	A	103131032	1	1	151	0	1	0	0	0	0	0	0	0	13328	580	20	3		3	RELN	7	103131032	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2280059	103131032	56007631	692	130179											
RELN	5649	broad.mit.edu	37	chr7	103180963	103180963	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatccacatgcttaacaAcagacaagcacatggggtaa	8	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103180963	G	G	103180963	1	3	151	0	1	0	0	0	0	0	0	0	13328	58	2	5		5	RELN	7	103180963	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	49931	103180963	55957700	693	130180											
RELN	5649	broad.mit.edu	37	chr7	103244895	103244895	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcgtcttgagctgtgtaaTagctctggctccagcggaaa	11	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103244895	A	A	103244895	3	1	151	1	0	0	0	0	1	0	0	0	13328	1406	49	5	7510	5	RELN	7	103244895	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	63932	103244895	55893768	694	130181											
CDHR3	222256	broad.mit.edu	37	chr7	105624631	105624631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttattccactttggacactGgtctaggtctacacctctac	6	13	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105624631	T	T	105624631	1	4	151	0	1	0	0	0	0	0	0	0	3150	1363	47	2		2	CDHR3	7	105624631	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2379736	105624631	53514032	695	130182											
PIK3CG	5294	broad.mit.edu	37	chr7	106508290	106508290	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccggctgggaccgcatcActtcctcctgctctatcaga	8	17	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106508290	T	T	106508290	3	4	151	1	0	0	0	0	1	0	0	0	12011	159	6	5	286	5	PIK3CG	7	106508290	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	883659	106508290	52630373	696	130183											
LAMB1	3912	broad.mit.edu	37	chr7	107580556	107580556	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtctcacggtaaggcccGatcacaccactgatcttcaa	7	14	4	1	rs141885441		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107580556	T	T	107580556	2	4	151	1	0	0	0	0	0	0	0	1	8682	1048	37	3		3	LAMB1	7	107580556	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1072266	107580556	51558107	697	130184											
PNPLA8	50640	broad.mit.edu	37	chr7	108151152	108151152	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatctacaagagtggttatgGcaaaatcaataagaagcgaa	9	5	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108151152	C	C	108151152	1	2	151	0	1	0	0	0	0	0	0	0	12266	1218	42	4		4	PNPLA8	7	108151152	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	570596	108151152	50987511	698	130185											
TFEC	22797	broad.mit.edu	37	chr7	115580691	115580691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagtggcagatagcagagGatctgttccaaatggagaga	15	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115580691	T	T	115580691	3	4	151	1	0	0	0	0	1	0	0	0	15925	1174	41	3	89	3	TFEC	7	115580691	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	7429539	115580691	43557972	699	130186											
ASZ1	136991	broad.mit.edu	37	chr7	117067454	117067454	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatctcccagccatcatcctCgctctcgctactctcgcctc	4	20	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117067454	T	T	117067454	3	4	151	1	0	0	0	0	1	0	0	0	1073	893	31	4	1418	4	ASZ1	7	117067454	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1486763	117067454	42071209	700	130187											
KCND2	3751	broad.mit.edu	37	chr7	120387728	120387728	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcctaaatatttttttttCtatcagccgatccagtttaa	3	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120387728	T	T	120387728	1	4	151	0	1	0	0	0	0	0	0	0	8089	928	32	4		4	KCND2	7	120387728	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3320274	120387728	38750935	701	130188											
C7orf58	79974	broad.mit.edu	37	chr7	120629986	120629986	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagcaatctgcttctctgtCctttctataaaactaaaatt	3	10	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120629986	T	T	120629986	1	4	151	0	1	0	0	0	0	0	0	0	2430	870	30	4		4	C7orf58	7	120629986	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	242258	120629986	38508677	702	130189											
PTPRZ1	5803	broad.mit.edu	37	chr7	121612652	121612652	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagtttcagaaatggtgtTtaaagcaagcaagataactt	10	4	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121612652	A	A	121612652	3	1	151	1	0	0	0	0	1	0	0	0	12922	1841	64	5	376	5	PTPRZ1	7	121612652	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	982666	121612652	37526011	703	130190											
PTPRZ1	5803	broad.mit.edu	37	chr7	121650794	121650794	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccttaaatacagtttctaTaacagaatatgaggaggaga	8	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121650794	C	C	121650794	3	2	151	1	0	0	0	0	1	0	0	0	12922	1406	49	5	1740	5	PTPRZ1	7	121650794	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	38142	121650794	37487869	704	130191											
IQUB	154865	broad.mit.edu	37	chr7	123142940	123142940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaatttgagagagtcataCagtacaattattgagtctat	8	4	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123142940	A	A	123142940	1	1	151	0	1	0	0	0	0	0	0	0	7890	493	17	3		3	IQUB	7	123142940	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1492146	123142940	35995723	705	130192											
HYAL4	23553	broad.mit.edu	37	chr7	123508270	123508270	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaacagaaaattaaatctcTccacaggtcttctagagtgc	6	10	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123508270	A	A	123508270	1	1	151	0	1	0	0	0	0	0	0	0	7536	1566	54	5		5	HYAL4	7	123508270	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	365330	123508270	35630393	706	130193											
RBM28	55131	broad.mit.edu	37	chr7	127970895	127970895	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaatgctctgtgtctggaTgcaagacaatgcggacatat	11	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127970895	C	C	127970895	3	2	151	1	0	0	0	0	1	0	0	0	13236	1464	51	5	1213	5	RBM28	7	127970895	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	4462625	127970895	31167768	707	130194											
FLNC	2318	broad.mit.edu	37	chr7	128483990	128483990	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtggggcaagagccacccTgggagtgaggggtattcggg	19	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128483990	G	G	128483990	1	3	151	0	1	0	0	0	0	0	0	0	5993	1595	55	5		5	FLNC	7	128483990	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	513095	128483990	30654673	708	130195											
FLNC	2318	broad.mit.edu	37	chr7	128492994	128492994	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggggccatctgagatcggGgacgccagcaaggtgcgggt	19	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128492994	A	A	128492994	2	1	151	1	0	0	0	0	0	0	0	1	5993	1219	43	4		4	FLNC	7	128492994	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	9004	128492994	30645669	709	130196											
FLNC	2318	broad.mit.edu	37	chr7	128498531	128498531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctcattgtcaagtgggGtgacgaaagtgtccctggaa	12	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128498531	T	T	128498531	3	4	151	1	0	0	0	0	1	0	0	0	5993	1261	44	3	8322	3	FLNC	7	128498531	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	5537	128498531	30640132	710	130197											
TSPAN33	340348	broad.mit.edu	37	chr7	128801488	128801488	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctctctggtttccagaatCtcagggtctggctcttttcc	10	12	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128801488	T	T	128801488	1	4	151	0	1	0	0	0	0	0	0	0	16773	928	32	4		4	TSPAN33	7	128801488	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	302957	128801488	30337175	711	130198											
CPA1	1357	broad.mit.edu	37	chr7	130023602	130023602	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttcctggagatcgtcacCaaccctgatggctttgcctt	8	13	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130023602	G	G	130023602	2	3	151	1	0	0	0	0	0	0	0	1	3821	581	21	4		4	CPA1	7	130023602	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1222114	130023602	29115061	712	130199											
CPA1	1357	broad.mit.edu	37	chr7	130025214	130025214	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgacctcggcttgccccctCgtccccaaggtggcttcgga	11	17	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130025214	G	G	130025214	1	3	151	0	1	0	0	0	0	0	0	0	3821	899	31	4		4	CPA1	7	130025214	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1612	130025214	29113449	713	130200											
PLXNA4	91584	broad.mit.edu	37	chr7	131912382	131912382	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgtgaacagccaggcggGgggagagaaggaggagggtg	22	5	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131912382	A	A	131912382	1	1	151	0	1	0	0	0	0	0	0	0	12217	1247	43	4		4	PLXNA4	7	131912382	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1887168	131912382	27226281	714	130201											
CALD1	800	broad.mit.edu	37	chr7	134632491	134632491	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagagcagaggaggaagcagGaggaagccgatcgaaaactc	15	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134632491	C	C	134632491	3	2	151	1	0	0	0	0	1	0	0	0	2607	1175	41	4	1844	4	CALD1	7	134632491	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2720109	134632491	24506172	715	130202											
NUP205	23165	broad.mit.edu	37	chr7	135290944	135290944	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagtgtttggattgtgaaGatgcagaagaatttgtacgt	14	2	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135290944	T	T	135290944	3	4	151	1	0	0	0	0	1	0	0	0	10854	942	33	3	2953	3	NUP205	7	135290944	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	658453	135290944	23847719	716	130203											
PTN	5764	broad.mit.edu	37	chr7	136939584	136939584	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaatcaatgaagcatctggCcttcagaaccctactgctta	6	11	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136939584	G	G	136939584	1	3	151	0	1	0	0	0	0	0	0	0	12874	754	26	4		4	PTN	7	136939584	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1648640	136939584	22199079	717	130204											
RAB19	401409	broad.mit.edu	37	chr7	140107369	140107369	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatgacctcccttcgtcTtgtcttgtactggatcccca	8	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140107369	C	C	140107369	1	2	151	0	1	0	0	0	0	0	0	0	13012	1624	56	5		5	RAB19	7	140107369	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	3167785	140107369	19031294	718	130205											
DENND2A	27147	broad.mit.edu	37	chr7	140287403	140287403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccccattctccctcccCtttctcccagacagactcag	4	21	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140287403	A	A	140287403	1	1	151	0	1	0	0	0	0	0	0	0	4469	696	24	2		2	DENND2A	7	140287403	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	180034	140287403	18851260	719	130206											
TAS2R38	5726	broad.mit.edu	37	chr7	141673490	141673490	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcgagttagagtcaacatGatgtcacttctctaattggc	9	8	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141673490	A	A	141673490	1	1	151	0	1	0	0	0	0	0	0	0	15694	1305	45	4		4	TAS2R38	7	141673490	5'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	1386087	141673490	17465173	720	130207											
MGAM	8972	broad.mit.edu	37	chr7	141797479	141797479	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgaatgtttatacaacacGggaaaatggtagagagtaca	10	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141797479	C	C	141797479	1	2	151	0	1	0	0	0	0	0	0	0	9634	1131	39	4		4	MGAM	7	141797479	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	123989	141797479	17341184	721	130208											
TRPV6	55503	broad.mit.edu	37	chr7	142571007	142571007	+	Intron	DEL	T	-	-													gttgagaaaactgtgaggcaTtcttctcagcgattccagta					rs4987673		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142571007	-	-	142571007	6	5	151	0	1	1	0	1	0	0	0	0	16725	1508	52	0		0	TRPV6	7	142571007	Intron	DEL	T	TCGA-50-5049-01A-01D-1625-08	773528	142571007	16567656	722	130209											
KEL	3792	broad.mit.edu	37	chr7	142654981	142654981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaagaaagggaaatggCcatactgactcatcagaagt	10	8	3	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142654981	A	A	142654981	3	1	151	1	0	0	0	0	1	0	0	0	8212	739	26	3	1649	3	KEL	7	142654981	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	83974	142654981	16483682	723	130210											
CLCN1	1180	broad.mit.edu	37	chr7	143016969	143016969	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcactattctaaatgtcaagGtgatggggactgaggaataa	11	5	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143016969	C	C	143016969	5	2	151	1	0	0	0	0	0	0	1	0	3493	1275	44	4	308	4	CLCN1	7	143016969	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	361988	143016969	16121694	724	130211											
OR2F2	135948	broad.mit.edu	37	chr7	143632642	143632642	+	Frame_Shift_Del	DEL	C	-	-													ccagttatttttctccctggCcttgggtgggattgagtttg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143632642	-	-	143632642	7	5	151	1	0	1	0	1	0	0	0	0	11091	739	26	0	319	0	OR2F2	7	143632642	Frame_Shift_Del	DEL	C	TCGA-50-5049-01A-01D-1625-08	615673	143632642	15506021	725	130212											
TPK1	27010	broad.mit.edu	37	chr7	144245644	144245644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtccaacaggaataaGgccacaccaatcaccctcca	7	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144245644	T	T	144245644	3	4	151	1	0	0	0	0	1	0	0	0	16528	1000	35	2	186	2	TPK1	7	144245644	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	613002	144245644	14893019	726	130213											
EZH2	2146	broad.mit.edu	37	chr7	148525827	148525827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaatcctaataatcaggCataccatctcggtgatcctc	6	12	2	2	rs143615322	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148525827	A	A	148525827	1	1	151	0	1	0	0	0	0	0	0	0	5377	725	25	3		3	EZH2	7	148525827	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	4280183	148525827	10612836	727	130214											
ZNF425	155054	broad.mit.edu	37	chr7	148802424	148802424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtgggaatttctaagCgccctggggtctcccgaggc	14	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148802424	A	A	148802424	3	1	151	1	0	0	0	0	1	0	0	0	18026	768	27	3	1723	3	ZNF425	7	148802424	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	276597	148802424	10336239	728	130215											
ZNF425	155054	broad.mit.edu	37	chr7	148802491	148802491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatatgctgtgatgctgaCttttttatttagaatctctg	7	6	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148802491	A	A	148802491	3	1	151	1	0	0	0	0	1	0	0	0	18026	565	20	3	1790	3	ZNF425	7	148802491	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	67	148802491	10336172	729	130216											
GIMAP8	155038	broad.mit.edu	37	chr7	150167962	150167962	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagggagacaagccacagGgtaagttgatctttaagaaa	12	5	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150167962	C	C	150167962	3	2	151	1	0	0	0	0	1	0	0	0	6449	1246	43	4	688	4	GIMAP8	7	150167962	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1365471	150167962	8970701	730	130217											
GIMAP5	55340	broad.mit.edu	37	chr7	150440086	150440087	+	Frame_Shift_Ins	INS	-	A	A													tttgcattatgagatttttgINStttttctattgttgtgcagc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150440087	A	A	150440086	7	5	151	1	0	1	1	0	0	0	0	0	6446	1377	48	0	865	0	GIMAP5	7	150440086	Frame_Shift_Ins	INS	-	TCGA-50-5049-01A-01D-1625-08	272124	150440086	8698577	731	130218											
ATG9B	285973	broad.mit.edu	37	chr7	150718261	150718261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccctctgcacagacacaGccacccagctcaccgggggg	11	18	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150718261	T	T	150718261	1	4	151	0	1	0	0	0	0	0	0	0	1107	986	34	3		3	ATG9B	7	150718261	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	278175	150718261	8420402	732	130219											
ABCB8	11194	broad.mit.edu	37	chr7	150731593	150731593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcactgggctctttcgcaggGactgctgaccttcgggtacc	13	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150731593	T	T	150731593	3	4	151	1	0	0	0	0	1	0	0	0	47	1188	41	3	580	3	ABCB8	7	150731593	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	13332	150731593	8407070	733	130220											
CDK5	1020	broad.mit.edu	37	chr7	150752434	150752434	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggccccaaagaggacatcCggtgggcggtaccacagtgt	14	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150752434	A	A	150752434	2	1	151	1	0	0	0	0	0	0	0	1	3172	639	23	1		1	CDK5	7	150752434	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	20841	150752434	8386229	734	130221											
AGAP3	116988	broad.mit.edu	37	chr7	150839456	150839456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttgtcccgcgctctggtGgcctgcctgctgtcgctgta	13	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150839456	T	T	150839456	1	4	151	0	1	0	0	0	0	0	0	0	369	1363	47	2		2	AGAP3	7	150839456	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	87022	150839456	8299207	735	130222											
MLL3	58508	broad.mit.edu	37	chr7	151904477	151904477	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcttcccgctcaggactaGattctgattttccatcacaa	6	13	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151904477	T	T	151904477	3	4	151	1	0	0	0	0	1	0	0	0	9715	942	33	3	11130	3	MLL3	7	151904477	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1065021	151904477	7234186	736	130223											
UBE3C	9690	broad.mit.edu	37	chr7	156963050	156963050	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctaccttgtcacagtccgGgggcgcttttcccattgcta	10	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156963050	C	C	156963050	3	2	151	1	0	0	0	0	1	0	0	0	17007	1232	43	4	262	4	UBE3C	7	156963050	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	5058573	156963050	2175613	737	130224											
RP1L1	94137	broad.mit.edu	37	chr8	10468702	10468702	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaactcatatgtcatgagtAtgggctcttctggaatgttg	10	8	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10468702	T	T	10468702	3	4	151	1	0	0	0	0	1	0	0	0	13644	449	16	5	4300	5	RP1L1	8	10468702	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08		10468702	135895320	738	130225											
LPL	4023	broad.mit.edu	37	chr8	19805777	19805777	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacttgccacctcattcccGgagtagcagagtccgtggct	10	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19805777	A	A	19805777	3	1	151	1	0	0	0	0	1	0	0	0	9008	1117	39	4	181	4	LPL	8	19805777	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	9337075	19805777	126558245	739	130226											
TEX15	56154	broad.mit.edu	37	chr8	30702509	30702509	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctccctcactatctgtcActgcagcggctgataactga	7	13	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30702509	T	T	30702509	3	4	151	1	0	0	0	0	1	0	0	0	15901	159	6	5	4360	5	TEX15	8	30702509	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	10896732	30702509	115661513	740	130227											
TEX15	56154	broad.mit.edu	37	chr8	30702944	30702944	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcatatttactagtgctaGataaaaatgctgtatcaatt	5	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30702944	T	T	30702944	3	4	151	1	0	0	0	0	1	0	0	0	15901	942	33	3	4795	3	TEX15	8	30702944	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	435	30702944	115661078	741	130228											
NRG1	3084	broad.mit.edu	37	chr8	32621438	32621438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagagacctctacttctcGtgacaccaccaaggctgcgg	10	13	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32621438	T	T	32621438	3	4	151	1	0	0	0	0	1	0	0	0	10742	1145	40	3	3212	3	NRG1	8	32621438	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1918494	32621438	113742584	742	130229											
PROSC	11212	broad.mit.edu	37	chr8	37633506	37633508	+	Missense_Mutation	TNP	TGG	ATT	ATT													tgaccaggttgagctgagcaTgggcatgtccgcggatttcc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATT	37633508	ATT	ATT	37633506	3	1	151	1	0	0	0	0	1	0	0	0	12665	1464	51	5	694	5	PROSC	8	37633506	Missense_Mutation	TNP	TGG	TCGA-50-5049-01A-01D-1625-08	5012068	37633506	108730516	743	130230											
ADAM9	8754	broad.mit.edu	37	chr8	38913229	38913229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgccagaataacaaagCctattgctacaacggcatgt	7	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38913229	A	A	38913229	3	1	151	1	0	0	0	0	1	0	0	0	253	739	26	3	1583	3	ADAM9	8	38913229	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1279723	38913229	107450793	744	130231											
MYST3	7994	broad.mit.edu	37	chr8	41836297	41836297	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgacatatccacatgccTataaaaaaataaaattccac	2	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41836297	A	A	41836297	5	1	151	1	0	0	0	0	0	0	1	0	10198	1536	53	5	5156	5	MYST3	8	41836297	Splice_Site	SNP	T	TCGA-50-5049-01A-01D-1625-08	2923068	41836297	104527725	745	130232											
CHRNA6	8973	broad.mit.edu	37	chr8	42611334	42611334	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcacccacctgggcatTgtgtgcgtggttggggtgcg	16	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42611334	A	A	42611334	2	1	151	1	0	0	0	0	0	0	0	1	3418	1799	63	5		5	CHRNA6	8	42611334	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	775037	42611334	103752688	746	130233											
PXDNL	137902	broad.mit.edu	37	chr8	52320839	52320839	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctcaggactgagaaggtaGgagggtgcccgccatttagc	15	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52320839	C	C	52320839	2	2	151	1	0	0	0	0	0	0	0	1	12956	987	35	4		4	PXDNL	8	52320839	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	9709505	52320839	94043183	747	130234											
PXDNL	137902	broad.mit.edu	37	chr8	52384864	52384864	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaagtaattcgggggctcTctgcaacaaaagaattattg	9	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52384864	C	C	52384864	3	2	151	1	0	0	0	0	1	0	0	0	12956	1565	54	5	3760	5	PXDNL	8	52384864	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	64025	52384864	93979158	748	130235											
ST18	9705	broad.mit.edu	37	chr8	53126713	53126713	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagcactggaacgctcatAtttcatggtgtggtgggcat	13	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53126713	G	G	53126713	1	3	151	0	1	0	0	0	0	0	0	0	15330	464	16	5		5	ST18	8	53126713	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	741849	53126713	93237309	749	130236											
RP1	6101	broad.mit.edu	37	chr8	55542651	55542651	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagtcgatgagaataacaActtattaaataacagattcc	6	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55542651	G	G	55542651	3	3	151	1	0	0	0	0	1	0	0	0	13643	43	2	5	6219	5	RP1	8	55542651	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	2415938	55542651	90821371	750	130237											
GGH	8836	broad.mit.edu	37	chr8	63929993	63929993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggtaggcaaaagttcagaTaagggcaattttcttcaaaa	10	5	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63929993	A	A	63929993	1	1	151	0	1	0	0	0	0	0	0	0	6421	1421	49	5		5	GGH	8	63929993	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	8387342	63929993	82434029	751	130238											
ARMC1	55156	broad.mit.edu	37	chr8	66517566	66517566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgatgctattgctgatgCcaaagcctaagccaagataa	10	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66517566	A	A	66517566	3	1	151	1	0	0	0	0	1	0	0	0	953	739	26	3	267	3	ARMC1	8	66517566	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2587573	66517566	79846456	752	130239											
ADHFE1	137872	broad.mit.edu	37	chr8	67361160	67361160	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatcctctgcacaccctccAcatgcctgcccgagtggtcg	9	17	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67361160	T	T	67361160	3	4	151	1	0	0	0	0	1	0	0	0	314	159	6	5	719	5	ADHFE1	8	67361160	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	843594	67361160	79002862	753	130240											
ARFGEF1	10565	broad.mit.edu	37	chr8	68184192	68184192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaatgtaaaaaagaaggCatagtatatgaacaaggttg	9	3	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68184192	A	A	68184192	1	1	151	0	1	0	0	0	0	0	0	0	854	725	25	3		3	ARFGEF1	8	68184192	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	823032	68184192	78179830	754	130241											
SLCO5A1	81796	broad.mit.edu	37	chr8	70744807	70744807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaccggtaaactcttagaCctgagggtctccggctcgca	12	12	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70744807	A	A	70744807	3	1	151	1	0	0	0	0	1	0	0	0	14845	506	18	3	2480	3	SLCO5A1	8	70744807	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2560615	70744807	75619215	755	130242											
MSC	9242	broad.mit.edu	37	chr8	72754953	72754953	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctttggtgtcagagtcCggtcttcccgagaccacgaa	10	12	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72754953	A	A	72754953	2	1	151	1	0	0	0	0	0	0	0	1	9962	639	23	1		1	MSC	8	72754953	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2010146	72754953	73609069	756	130243											
TRPA1	8989	broad.mit.edu	37	chr8	72951251	72951251	+	Frame_Shift_Del	DEL	C	-	-													tcatcatatgagctctaaatCcataagccaacctacaaaaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72951251	-	-	72951251	7	5	151	1	0	1	0	1	0	0	0	0	16702	855	30	0	1251	0	TRPA1	8	72951251	Frame_Shift_Del	DEL	C	TCGA-50-5049-01A-01D-1625-08	196298	72951251	73412771	757	130244											
ZFHX4	79776	broad.mit.edu	37	chr8	77764403	77764403	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatacctgggacggagttcaGcttggggccagatttgggct	15	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77764403	C	C	77764403	3	2	151	1	0	0	0	0	1	0	0	0	17761	971	34	4	5280	4	ZFHX4	8	77764403	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4813152	77764403	68599619	758	130245											
ZFHX4	79776	broad.mit.edu	37	chr8	77766690	77766690	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaactctggcaggaacaCcagcacatgcacttccttgc	9	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77766690	A	A	77766690	3	1	151	1	0	0	0	0	1	0	0	0	17761	506	18	3	7567	3	ZFHX4	8	77766690	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2287	77766690	68597332	759	130246											
ZFHX4	79776	broad.mit.edu	37	chr8	77766734	77766734	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaaaccaattccttcactCtccgttcttggaaaggccca	5	14	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77766734	G	G	77766734	3	3	151	1	0	0	0	0	1	0	0	0	17761	913	32	4	7611	4	ZFHX4	8	77766734	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	44	77766734	68597288	760	130247											
ZFHX4	79776	broad.mit.edu	37	chr8	77767190	77767190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtctcataaacggtgtcCgttttgccgagccctgttta	9	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767190	A	A	77767190	3	1	151	1	0	0	0	0	1	0	0	0	17761	652	23	1	8067	1	ZFHX4	8	77767190	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	456	77767190	68596832	761	130248											
PEX2	5828	broad.mit.edu	37	chr8	77895426	77895426	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaggatacataaatggtaTacttaggatgactaatatta	7	3	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77895426	C	C	77895426	1	2	151	0	1	0	0	0	0	0	0	0	11840	1421	49	5		5	PEX2	8	77895426	3'UTR	SNP	T	TCGA-50-5049-01A-01D-1625-08	128236	77895426	68468596	762	130249											
PEX2	5828	broad.mit.edu	37	chr8	77896445	77896445	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggtctctaggaaaaaataCaattgaagaacattagcaaa	7	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77896445	G	G	77896445	1	3	151	0	1	0	0	0	0	0	0	0	11840	493	17	4		4	PEX2	8	77896445	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1019	77896445	68467577	763	130250											
CA13	377677	broad.mit.edu	37	chr8	86158015	86158015	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgctccctcctctttctcGctgctcagtcacatctttct	4	19	6	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86158015	T	T	86158015	1	4	151	0	1	0	0	0	0	0	0	0	2540	1102	38	3		3	CA13	8	86158015	5'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	8261570	86158015	60206007	764	130251											
CA3	761	broad.mit.edu	37	chr8	86354332	86354332	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtcctctccctggaccctAccgacttcgccagtttcatc	8	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86354332	T	T	86354332	3	4	151	1	0	0	0	0	1	0	0	0	2543	391	14	5	273	5	CA3	8	86354332	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	196317	86354332	60009690	765	130252											
CNGB3	54714	broad.mit.edu	37	chr8	87588160	87588161	+	Missense_Mutation	DNP	GG	AT	AT													aactgtccttctaactgagtGgggttcttcctccactgcaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	87588161	AT	AT	87588160	3	1	151	1	0	0	0	0	1	0	0	0	3633	1348	47	4	131	4	CNGB3	8	87588160	Missense_Mutation	DNP	GG	TCGA-50-5049-01A-01D-1625-08	1233828	87588160	58775862	766	130253											
CNBD1	168975	broad.mit.edu	37	chr8	88249365	88249365	+	Intron	DEL	C	-	-													gagatgagtatttgctttttCcacaagcaacaaggtaacgg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88249365	-	-	88249365	6	5	151	0	1	1	0	1	0	0	0	0	3623	870	30	0		0	CNBD1	8	88249365	Intron	DEL	C	TCGA-50-5049-01A-01D-1625-08	661205	88249365	58114657	767	130254											
MMP16	4325	broad.mit.edu	37	chr8	89053647	89053647	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgaatctcaagttacCacaaactcctgcaaaagaaa	5	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89053647	T	T	89053647	1	4	151	0	1	0	0	0	0	0	0	0	9748	609	21	4		4	MMP16	8	89053647	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	804282	89053647	57310375	768	130255											
MMP16	4325	broad.mit.edu	37	chr8	89068467	89068467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtcatgagggtaaccaGgttgaagagttgtatccttg	12	6	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89068467	T	T	89068467	3	4	151	1	0	0	0	0	1	0	0	0	9748	1000	35	2	573	2	MMP16	8	89068467	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	14820	89068467	57295555	769	130256											
MMP16	4325	broad.mit.edu	37	chr8	89128926	89128926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtagaggtcttgtaggtGgaggaatcttgtcaggtgga	17	4	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89128926	T	T	89128926	3	4	151	1	0	0	0	0	1	0	0	0	9748	1348	47	2	1106	2	MMP16	8	89128926	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	60459	89128926	57235096	770	130257											
MMP16	4325	broad.mit.edu	37	chr8	89128995	89128995	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcacttaaaactggaataGagctggaaaatatgctacag	9	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89128995	T	T	89128995	1	4	151	0	1	0	0	0	0	0	0	0	9748	957	33	3		3	MMP16	8	89128995	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	69	89128995	57235027	771	130258											
NECAB1	64168	broad.mit.edu	37	chr8	91963393	91963393	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagtaatgtggatttcTtggaaactccagaactcaca	8	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91963393	C	C	91963393	2	2	151	1	0	0	0	0	0	0	0	1	10399	1606	56	5		5	NECAB1	8	91963393	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	2834398	91963393	54400629	772	130259											
SLC26A7	115111	broad.mit.edu	37	chr8	92364249	92364249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagaagtaaagtttgaatGggggaggtgtggaaagctac	15	3	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92364249	T	T	92364249	1	4	151	0	1	0	0	0	0	0	0	0	14636	1363	47	2		2	SLC26A7	8	92364249	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	400856	92364249	53999773	773	130260											
TMEM67	91147	broad.mit.edu	37	chr8	94767133	94767133	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctgtgaggcttccagCgtcggtaccatggcgacgcg	17	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94767133	A	A	94767133	1	1	151	0	1	0	0	0	0	0	0	0	16319	783	27	3		3	TMEM67	8	94767133	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	2402884	94767133	51596889	774	130261											
TMEM67	91147	broad.mit.edu	37	chr8	94798502	94798502	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcattttcttagtggatgCagtaagtggacgagaaaatg	13	5	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94798502	T	T	94798502	3	4	151	1	0	0	0	0	1	0	0	0	16319	710	25	4	1528	4	TMEM67	8	94798502	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	31369	94798502	51565520	775	130262											
CDH17	1015	broad.mit.edu	37	chr8	95189829	95189829	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttacctggagattgtgagTagatcttgtttccctgtcca	9	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95189829	A	A	95189829	3	1	151	1	0	0	0	0	1	0	0	0	3132	1638	57	5	2287	5	CDH17	8	95189829	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	391327	95189829	51174193	776	130263											
KIAA1429	25962	broad.mit.edu	37	chr8	95524282	95524282	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacgtaaggcagtggtaagGccaactccttctggggtcat	12	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95524282	C	C	95524282	2	2	151	1	0	0	0	0	0	0	0	1	8301	1190	42	4		4	KIAA1429	8	95524282	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	334453	95524282	50839740	777	130264											
KIAA1429	25962	broad.mit.edu	37	chr8	95539140	95539140	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcgataggttggcgaagCgctacttgtaaatttaaagc	12	6	0	0	rs150793271		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95539140	A	A	95539140	2	1	151	1	0	0	0	0	0	0	0	1	8301	755	27	3		3	KIAA1429	8	95539140	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	14858	95539140	50824882	778	130265											
C8orf37	157657	broad.mit.edu	37	chr8	96281405	96281405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatccaagagctcgtccaGgtcctccgccatcttgaatc	7	15	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96281405	T	T	96281405	3	4	151	1	0	0	0	0	1	0	0	0	2449	991	35	2	634	2	C8orf37	8	96281405	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	742265	96281405	50082617	779	130266											
MTDH	92140	broad.mit.edu	37	chr8	98656964	98656964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccgcggcttgcgccgGcgcccgcaaaaagcggagga	17	14	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98656964	T	T	98656964	3	4	151	1	0	0	0	0	1	0	0	0	10011	1203	42	3	232	3	MTDH	8	98656964	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2375559	98656964	47707058	780	130267											
HRSP12	10247	broad.mit.edu	37	chr8	99129331	99129331	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcaaggacgacatggctaaGccttccctcttgcagcccct	8	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99129331	C	C	99129331	1	2	151	0	1	0	0	0	0	0	0	0	7427	986	34	4		4	HRSP12	8	99129331	5'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	472367	99129331	47234691	781	130268											
VPS13B	157680	broad.mit.edu	37	chr8	100148980	100148980	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagaacactagtggcaaaGgtattggcttctttccttta	10	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100148980	C	C	100148980	3	2	151	1	0	0	0	0	1	0	0	0	17317	1014	35	4	1735	4	VPS13B	8	100148980	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1019649	100148980	46215042	782	130269											
VPS13B	157680	broad.mit.edu	37	chr8	100832257	100832257	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgccctgggccctgcttatCaatgaatccaaatgggacct	9	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100832257	A	A	100832257	2	1	151	1	0	0	0	0	0	0	0	1	17317	816	29	3		3	VPS13B	8	100832257	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	683277	100832257	45531765	783	130270											
ATP6V1C1	528	broad.mit.edu	37	chr8	104066159	104066159	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaattgtgaagaaggatgActttgttcttgattcagagt	11	3	2	6			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104066159	T	T	104066159	3	4	151	1	0	0	0	0	1	0	0	0	1184	275	10	5	543	5	ATP6V1C1	8	104066159	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	3233902	104066159	42297863	784	130271											
RIMS2	9699	broad.mit.edu	37	chr8	104987593	104987593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttagattatcgacatgatgGtcgagatcttcaaagctcaa	8	7	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104987593	A	A	104987593	3	1	151	1	0	0	0	0	1	0	0	0	13479	1261	44	4	2974	4	RIMS2	8	104987593	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	921434	104987593	41376429	785	130272											
RIMS2	9699	broad.mit.edu	37	chr8	105263260	105263260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttcccaagcaccgtatGtaaaagtgtatctattagat	6	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105263260	T	T	105263260	3	4	151	1	0	0	0	0	1	0	0	0	13479	1377	48	3	3986	3	RIMS2	8	105263260	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	275667	105263260	41100762	786	130273											
RIMS2	9699	broad.mit.edu	37	chr8	105263899	105263899	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtggcccagatacttttaGatgaactagagctatccaat	9	8	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105263899	T	T	105263899	3	4	151	1	0	0	0	0	1	0	0	0	13479	942	33	3	4191	3	RIMS2	8	105263899	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	639	105263899	41100123	787	130274											
TM7SF4	81501	broad.mit.edu	37	chr8	105361660	105361660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagaaaggaaaaacctgGggctgtttttcctccccata	8	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105361660	T	T	105361660	3	4	151	1	0	0	0	0	1	0	0	0	16099	1232	43	2	882	2	TM7SF4	8	105361660	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	97761	105361660	41002362	788	130275											
TM7SF4	81501	broad.mit.edu	37	chr8	105368458	105368458	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcctcagccacatcgcaCcaacaattctcttcaggtct	4	16	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105368458	A	A	105368458	1	1	151	0	1	0	0	0	0	0	0	0	16099	522	18	3		3	TM7SF4	8	105368458	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	6798	105368458	40995564	789	130276											
LRP12	29967	broad.mit.edu	37	chr8	105503207	105503207	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaccccattatcaagttgTctcaaaggactctggttctg	7	11	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105503207	C	C	105503207	2	2	151	1	0	0	0	0	0	0	0	1	9041	1664	58	5		5	LRP12	8	105503207	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	134749	105503207	40860815	790	130277											
OXR1	55074	broad.mit.edu	37	chr8	107691480	107691480	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacaagaaagatggaagacGaatgtcttttcagaaaccta	9	6	2	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107691480	A	A	107691480	3	1	151	1	0	0	0	0	1	0	0	0	11428	1058	37	4	476	4	OXR1	8	107691480	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2188273	107691480	38672542	791	130278											
RSPO2	340419	broad.mit.edu	37	chr8	109094816	109094816	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgccttggcagtggctgtaAtccatgcagttcagaatgat	11	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109094816	T	T	109094816	3	4	151	1	0	0	0	0	1	0	0	0	13821	98	4	5	700	5	RSPO2	8	109094816	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1403336	109094816	37269206	792	130279											
TRHR	7201	broad.mit.edu	37	chr8	110099719	110099720	+	5'Flank	DNP	CG	GA	GA													ttttgagaagtcagtgtttcCgagaaactttaagcttctaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	110099720	GA	GA	110099719	1	3	151	0	1	0	0	0	0	0	0	0	16604	667	23	4		4	TRHR	8	110099719	5'Flank	DNP	CG	TCGA-50-5049-01A-01D-1625-08	1004903	110099719	36264303	793	130280											
PKHD1L1	93035	broad.mit.edu	37	chr8	110420267	110420267	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacaaattctgtttgtcaCttaatttcaggagactttga	6	7	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110420267	T	T	110420267	1	4	151	0	1	0	0	0	0	0	0	0	12067	580	20	4		4	PKHD1L1	8	110420267	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	320548	110420267	35943755	794	130281											
PKHD1L1	93035	broad.mit.edu	37	chr8	110456827	110456827	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagttgttgctaatacAaaatttgtttatactggagg	9	3	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110456827	T	T	110456827	1	4	151	0	1	0	0	0	0	0	0	0	12067	145	5	5		5	PKHD1L1	8	110456827	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	36560	110456827	35907195	795	130282											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477060	110477060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgggtcaatggaggtGcccttcagttccataacttt	10	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110477060	T	T	110477060	3	4	151	1	0	0	0	0	1	0	0	0	12067	1319	46	3	8193	3	PKHD1L1	8	110477060	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	20233	110477060	35886962	796	130283											
KCNV1	27012	broad.mit.edu	37	chr8	110984377	110984377	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgatcaggtaaagtatggGagttggtaattttgaatatc	11	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110984377	T	T	110984377	1	4	151	0	1	0	0	0	0	0	0	0	8164	1189	41	3		3	KCNV1	8	110984377	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	507317	110984377	35379645	797	130284											
CSMD3	114788	broad.mit.edu	37	chr8	113363374	113363374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttacactttaagttctaGggtaaatactttatagtctt	5	5	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113363374	T	T	113363374	1	4	151	0	1	0	0	0	0	0	0	0	3980	1015	35	2		2	CSMD3	8	113363374	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2378997	113363374	33000648	798	130285											
CSMD3	114788	broad.mit.edu	37	chr8	113599265	113599265	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttaatgactaaaaatgaaCaatatacaagtatgtctgag	6	4	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113599265	G	G	113599265	1	3	151	0	1	0	0	0	0	0	0	0	3980	493	17	4		4	CSMD3	8	113599265	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	235891	113599265	32764757	799	130286											
CSMD3	114788	broad.mit.edu	37	chr8	113694658	113694658	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggttctatttctcactcaCtactacacttacctccacat	3	14	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113694658	T	T	113694658	1	4	151	0	1	0	0	0	0	0	0	0	3980	580	20	4		4	CSMD3	8	113694658	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	95393	113694658	32669364	800	130287											
CSMD3	114788	broad.mit.edu	37	chr8	113694713	113694713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actccacattacttttccatCcataagaatacatgtaattg	3	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113694713	A	A	113694713	3	1	151	1	0	0	0	0	1	0	0	0	3980	855	30	3	8712	3	CSMD3	8	113694713	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	55	113694713	32669309	801	130288											
CSMD3	114788	broad.mit.edu	37	chr8	114448881	114448881	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccacctccatccaaagcgGaggggacccccaaagcagac	10	17	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114448881	T	T	114448881	1	4	151	0	1	0	0	0	0	0	0	0	3980	1189	41	3		3	CSMD3	8	114448881	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	754168	114448881	31915141	802	130289											
TRPS1	7227	broad.mit.edu	37	chr8	116427108	116427108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttacttaggctggggagtgGaatttctctctggtgacttt	12	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116427108	T	T	116427108	3	4	151	1	0	0	0	0	1	0	0	0	16718	1174	41	3	860	3	TRPS1	8	116427108	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1978227	116427108	29936914	803	130290											
TRPS1	7227	broad.mit.edu	37	chr8	116599195	116599195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccttttgcccttcaaaaCaaatgaattatttaaaaatg	3	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116599195	A	A	116599195	1	1	151	0	1	0	0	0	0	0	0	0	16718	493	17	3		3	TRPS1	8	116599195	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	172087	116599195	29764827	804	130291											
TRPS1	7227	broad.mit.edu	37	chr8	116616676	116616676	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtctgtcttggtcattGtctctccttctgaacttttg	7	10	6	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116616676	A	A	116616676	3	1	151	1	0	0	0	0	1	0	0	0	16718	1377	48	4	2380	4	TRPS1	8	116616676	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	17481	116616676	29747346	805	130292											
RAD21	5885	broad.mit.edu	37	chr8	117868937	117868937	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcaggctgctctggcaaCatcacccctgcctcagagag	11	14	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117868937	G	G	117868937	3	3	151	1	0	0	0	0	1	0	0	0	13089	478	17	4	1165	4	RAD21	8	117868937	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1252261	117868937	28495085	806	130293											
SLC30A8	169026	broad.mit.edu	37	chr8	118174170	118174170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctagtacttatgtagattAggtagtacagaagctgaccc	9	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118174170	G	G	118174170	1	3	151	0	1	0	0	0	0	0	0	0	14675	435	15	5		5	SLC30A8	8	118174170	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	305233	118174170	28189852	807	130294											
ENPP2	5168	broad.mit.edu	37	chr8	120575281	120575281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaggtaaaacgaagtcaCagttgatgagttgatgttga	13	3	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120575281	A	A	120575281	1	1	151	0	1	0	0	0	0	0	0	0	5172	493	17	3		3	ENPP2	8	120575281	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2401111	120575281	25788741	808	130295											
COL14A1	7373	broad.mit.edu	37	chr8	121170563	121170563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaacatgtagtgccaagCattgtgttaggattttttgg	10	4	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121170563	A	A	121170563	1	1	151	0	1	0	0	0	0	0	0	0	3703	725	25	3		3	COL14A1	8	121170563	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	595282	121170563	25193459	809	130296											
COL14A1	7373	broad.mit.edu	37	chr8	121222052	121222052	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtgactgagaacagcatgcGagtcaaatgggatgcagtgc	14	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121222052	A	A	121222052	3	1	151	1	0	0	0	0	1	0	0	0	3703	1058	37	4	1421	4	COL14A1	8	121222052	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	51489	121222052	25141970	810	130297											
FER1L6	654463	broad.mit.edu	37	chr8	125022845	125022846	+	Frame_Shift_Ins	INS	-	T	T													tttcacaggaattacaactaINStttgccatttgaggctaaga							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125022846	T	T	125022845	7	5	151	1	0	1	1	0	0	0	0	0	5872	449	16	0	1762	0	FER1L6	8	125022845	Frame_Shift_Ins	INS	-	TCGA-50-5049-01A-01D-1625-08	3800793	125022845	21341177	811	130298											
ADCY8	114	broad.mit.edu	37	chr8	131848481	131848481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaattccacttcccacaGgaagttgagcacactttgga	7	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131848481	T	T	131848481	1	4	151	0	1	0	0	0	0	0	0	0	300	1015	35	2		2	ADCY8	8	131848481	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	6825636	131848481	14515541	812	130299											
EFR3A	23167	broad.mit.edu	37	chr8	132991151	132991151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cactgccagggtctttcctgGatcctttgttatcaccatct	7	13	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132991151	T	T	132991151	3	4	151	1	0	0	0	0	1	0	0	0	4998	1174	41	3	1434	3	EFR3A	8	132991151	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1142670	132991151	13372871	813	130300											
OC90	729330	broad.mit.edu	37	chr8	133053387	133053387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcctcatagcacctgcGgtgctggaagcagcagctgt	13	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133053387	T	T	133053387	3	4	151	1	0	0	0	0	1	0	0	0	10909	1116	39	1	1108	1	OC90	8	133053387	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	62236	133053387	13310635	814	130301											
PHF20L1	51105	broad.mit.edu	37	chr8	133807005	133807005	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagctggagaagaagttctGgctcgttggacagactgtcg	14	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133807005	C	C	133807005	2	2	151	1	0	0	0	0	0	0	0	1	11927	1335	47	4		4	PHF20L1	8	133807005	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	753618	133807005	12557017	815	130302											
PHF20L1	51105	broad.mit.edu	37	chr8	133829707	133829707	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccgtaatgaatgtcccaGggcagaaaaagaggatacac	10	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133829707	T	T	133829707	3	4	151	1	0	0	0	0	1	0	0	0	11927	1000	35	2	1544	2	PHF20L1	8	133829707	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	22702	133829707	12534315	816	130303											
TG	7038	broad.mit.edu	37	chr8	133931682	133931682	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attccttgtcctgttggattCtaccaagaacaggcagggag	11	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133931682	A	A	133931682	3	1	151	1	0	0	0	0	1	0	0	0	15936	912	32	3	4522	3	TG	8	133931682	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	101975	133931682	12432340	817	130304											
TG	7038	broad.mit.edu	37	chr8	134034417	134034417	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagttgctgcctctggtggGagctgctgaccccctgagcc	14	13	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134034417	T	T	134034417	1	4	151	0	1	0	0	0	0	0	0	0	15936	1189	41	3		3	TG	8	134034417	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	102735	134034417	12329605	818	130305											
KHDRBS3	10656	broad.mit.edu	37	chr8	136594392	136594392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcactggatattgtacccGcgtacgcttcctcaccttgt	8	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136594392	T	T	136594392	1	4	151	0	1	0	0	0	0	0	0	0	8218	1102	38	3		3	KHDRBS3	8	136594392	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2559975	136594392	9769630	819	130306											
FAM135B	51059	broad.mit.edu	37	chr8	139163423	139163423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtgggaaaggtaagcccGtcagccagcttacctaaaca	11	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139163423	T	T	139163423	1	4	151	0	1	0	0	0	0	0	0	0	5495	1160	40	3		3	FAM135B	8	139163423	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2569031	139163423	7200599	820	130307											
COL22A1	169044	broad.mit.edu	37	chr8	139668139	139668139	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatttattgtatgcttttaCcttagccaagagatttatgt	7	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139668139	A	A	139668139	5	1	151	1	0	0	0	0	0	0	1	0	3713	521	18	3	1630	3	COL22A1	8	139668139	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	504716	139668139	6695883	821	130308											
TRAPPC9	83696	broad.mit.edu	37	chr8	141461087	141461087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaaagccacgtcggtgCgcggctgctccacgatctcc	13	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141461087	A	A	141461087	3	1	151	1	0	0	0	0	1	0	0	0	16589	768	27	3	3148	3	TRAPPC9	8	141461087	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1792948	141461087	4902935	822	130309											
CYP11B1	1584	broad.mit.edu	37	chr8	143958347	143958347	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaggcagccccgggcctcCtggctgcctccccacactcc	9	21	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143958347	T	T	143958347	1	4	151	0	1	0	0	0	0	0	0	0	4178	696	24	4		4	CYP11B1	8	143958347	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2497260	143958347	2405675	823	130310											
PLEC	5339	broad.mit.edu	37	chr8	145016545	145016545	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttctgtgccaccggccaCgccactgcacccacctacgc	7	22	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145016545	G	G	145016545	1	3	151	0	1	0	0	0	0	0	0	0	12147	551	19	4		4	PLEC	8	145016545	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1058198	145016545	1347477	824	130311											
MAF1	84232	broad.mit.edu	37	chr8	145161148	145161148	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcccagccttagctgggtgAgggtcaggtggagggaaggg	20	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145161148	T	T	145161148	1	4	151	0	1	0	0	0	0	0	0	0	9244	319	11	5		5	MAF1	8	145161148	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	144603	145161148	1202874	825	130312											
DMRT1	1761	broad.mit.edu	37	chr9	847037	847037	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcccagtgcggccgaGctgcttgtcaaaagagagaa	12	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	847037	C	C	847037	3	2	151	1	0	0	0	0	1	0	0	0	4625	962	34	4	438	4	DMRT1	9	847037	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08		847037	140366394	826	130313											
DMRT3	58524	broad.mit.edu	37	chr9	990523	990523	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgttgccctccaatgggcacAtctttgaacacaccttgagc	8	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	990523	G	G	990523	3	3	151	1	0	0	0	0	1	0	0	0	4627	217	8	5	943	5	DMRT3	9	990523	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	143486	990523	140222908	827	130314											
RFX3	5991	broad.mit.edu	37	chr9	3247999	3247999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggcttatttttaataacCcagtgggtcacagctctttc	7	10	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3247999	A	A	3247999	1	1	151	0	1	0	0	0	0	0	0	0	13372	624	22	2		2	RFX3	9	3247999	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2257476	3247999	137965432	828	130315											
RFX3	5991	broad.mit.edu	37	chr9	3257050	3257050	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaggaaaactgggtcttccTtcatagggtttcagtgcttg	11	7	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3257050	A	A	3257050	3	1	151	1	0	0	0	0	1	0	0	0	13372	1606	56	5	666	5	RFX3	9	3257050	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	9051	3257050	137956381	829	130316											
JAK2	3717	broad.mit.edu	37	chr9	5089871	5089871	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctacagtgctggtaagctGcccattgaaacctattttaa	8	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5089871	C	C	5089871	1	2	151	0	1	0	0	0	0	0	0	0	8008	1334	46	4		4	JAK2	9	5089871	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1832821	5089871	136123560	830	130317											
RLN1	6013	broad.mit.edu	37	chr9	5339747	5339747	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacaagaacaggcgaggcatCctgggcctggtctctcctgg	13	12	1	1	rs149545634		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5339747	T	T	5339747	1	4	151	0	1	0	0	0	0	0	0	0	13502	870	30	4		4	RLN1	9	5339747	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	249876	5339747	135873684	831	130318											
TPD52L3	89882	broad.mit.edu	37	chr9	6328535	6328535	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctctgcagcccaataattCgactctttctaccaagaatt	4	12	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6328535	T	T	6328535	1	4	151	0	1	0	0	0	0	0	0	0	16524	899	31	4		4	TPD52L3	9	6328535	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	988788	6328535	134884896	832	130319											
GLDC	2731	broad.mit.edu	37	chr9	6554666	6554666	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccagcagcccagaactTacactccgatgggccccatg	9	15	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6554666	A	A	6554666	1	1	151	0	1	0	0	0	0	0	0	0	6497	1769	61	5		5	GLDC	9	6554666	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	226131	6554666	134658765	833	130320											
KDM4C	23081	broad.mit.edu	37	chr9	6984176	6984176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgacagcttccagtgtGctaggtctacctctaaaagg	10	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6984176	T	T	6984176	3	4	151	1	0	0	0	0	1	0	0	0	8200	1319	46	3	1230	3	KDM4C	9	6984176	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	429510	6984176	134229255	834	130321											
PTPRD	5789	broad.mit.edu	37	chr9	8528611	8528611	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcgtaactgcttaataCgaccattgttgttgcttgtg	9	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8528611	A	A	8528611	3	1	151	1	0	0	0	0	1	0	0	0	12907	536	19	3	5413	3	PTPRD	9	8528611	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1544435	8528611	132684820	835	130322											
FAM154A	158297	broad.mit.edu	37	chr9	18928669	18928669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaaactcagtggtgttaCagaaaggcatgtctagccca	10	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18928669	A	A	18928669	3	1	151	1	0	0	0	0	1	0	0	0	5509	478	17	3	622	3	FAM154A	9	18928669	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	10400058	18928669	122284762	836	130323											
HAUS6	54801	broad.mit.edu	37	chr9	19056230	19056230	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattaggaatttttttaaacCttgaaaaacagtgttacact	5	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19056230	G	G	19056230	1	3	151	0	1	0	0	0	0	0	0	0	7036	696	24	4		4	HAUS6	9	19056230	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	127561	19056230	122157201	837	130324											
MLLT3	4300	broad.mit.edu	37	chr9	20414102	20414102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaggccatcttaggaaCtattttctcttctttcagtg	7	9	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20414102	T	T	20414102	3	4	151	1	0	0	0	0	1	0	0	0	9721	565	20	4	992	4	MLLT3	9	20414102	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1357872	20414102	120799329	838	130325											
KIAA1797	54914	broad.mit.edu	37	chr9	20820325	20820325	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcaatattttctaggtGtgtataggacaaattctacg	7	6	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20820325	T	T	20820325	2	4	151	1	0	0	0	0	0	0	0	1	8328	1364	48	3		3	KIAA1797	9	20820325	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	406223	20820325	120393106	839	130326											
IFNA6	3443	broad.mit.edu	37	chr9	21350457	21350457	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattctttggaagtattttcTcacagccaggatggagtcct	10	8	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21350457	C	C	21350457	3	2	151	1	0	0	0	0	1	0	0	0	7611	1559	54	5	141	5	IFNA6	9	21350457	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	530132	21350457	119862974	840	130327											
LINGO2	158038	broad.mit.edu	37	chr9	28150752	28150752	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatccagagtatcagaatCccttccaaaataagatagta	5	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28150752	A	A	28150752	1	1	151	0	1	0	0	0	0	0	0	0	8888	870	30	3		3	LINGO2	9	28150752	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	6800295	28150752	113062679	841	130328											
TAF1L	138474	broad.mit.edu	37	chr9	32633177	32633178	+	Missense_Mutation	DNP	CC	AA	AA													caagggacactgctggccaaCcacaaaaatatccactaatt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32633178	AA	AA	32633177	3	1	151	1	0	0	0	0	1	0	0	0	15642	507	18	3	3083	3	TAF1L	9	32633177	Missense_Mutation	DNP	CC	TCGA-50-5049-01A-01D-1625-08	4482425	32633177	108580254	842	130329											
TAF1L	138474	broad.mit.edu	37	chr9	32633194	32633194	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccacaaaaatatccactAattcccgaatatagtaaccc	2	13	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32633194	G	G	32633194	3	3	151	1	0	0	0	0	1	0	0	0	15642	372	13	5	3100	5	TAF1L	9	32633194	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	17	32633194	108580237	843	130330											
APTX	54840	broad.mit.edu	37	chr9	32989594	32989594	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacattgggagggcagaatCaggaataaatagggccctgg	14	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32989594	G	G	32989594	1	3	151	0	1	0	0	0	0	0	0	0	822	841	29	4		4	APTX	9	32989594	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	356400	32989594	108223837	844	130331											
KIF24	347240	broad.mit.edu	37	chr9	34319136	34319136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaggcctctacaactaCtatgacaatgagaaggaaaa	8	9	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34319136	A	A	34319136	1	1	151	0	1	0	0	0	0	0	0	0	8362	580	20	3		3	KIF24	9	34319136	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1329542	34319136	106894295	845	130332											
FANCG	2189	broad.mit.edu	37	chr9	35074929	35074929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtatacatacctgggCacatctgcacactgaggagg	11	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35074929	A	A	35074929	3	1	151	1	0	0	0	0	1	0	0	0	5725	710	25	3	249	3	FANCG	9	35074929	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	755793	35074929	106138502	846	130333											
TLN1	7094	broad.mit.edu	37	chr9	35721817	35721817	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcctatgaggcagaggttGgtgttggtgttacaggtcag	15	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35721817	A	A	35721817	1	1	151	0	1	0	0	0	0	0	0	0	16070	1363	47	4		4	TLN1	9	35721817	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	646888	35721817	105491614	847	130334											
RGP1	9827	broad.mit.edu	37	chr9	35751584	35751584	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtcctagacgttatccaGtatgtagactccaggcttat	8	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35751584	T	T	35751584	1	4	151	0	1	0	0	0	0	0	0	0	13392	1044	36	3		3	RGP1	9	35751584	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	29767	35751584	105461847	848	130335											
PAX5	5079	broad.mit.edu	37	chr9	36966657	36966657	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaacaagtctccccgcatCtgcttccggaggaagtctct	10	13	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36966657	A	A	36966657	3	1	151	1	0	0	0	0	1	0	0	0	11576	912	32	3	526	3	PAX5	9	36966657	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1215073	36966657	104246774	849	130336											
FAM75A6	389730	broad.mit.edu	37	chr9	43627193	43627193	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgggaaagaagactgaagAtgggcctgagcctcggcctg	15	9	0	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43627193	T	T	43627193	3	4	151	1	0	0	0	0	1	0	0	0	5674	330	12	5	2541	5	FAM75A6	9	43627193	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	6660536	43627193	97586238	850	130337											
PIP5K1B	8395	broad.mit.edu	37	chr9	71403943	71403943	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaggtctggcattccaatCagcttgatacagcatcaatc	8	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71403943	A	A	71403943	1	1	151	0	1	0	0	0	0	0	0	0	12035	841	29	3		3	PIP5K1B	9	71403943	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	27776750	71403943	69809488	851	130338											
RORB	6096	broad.mit.edu	37	chr9	77257239	77257239	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgtgcatttgaagttgaAgggacaaccatcccatgacc	9	9	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77257239	C	C	77257239	1	2	151	0	1	0	0	0	0	0	0	0	13640	87	3	5		5	RORB	9	77257239	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	5853296	77257239	63956192	852	130339											
RORB	6096	broad.mit.edu	37	chr9	77275592	77275592	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgtcaatacaccatggaaGagctgcaccagctggcgtgg	12	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77275592	T	T	77275592	4	4	151	1	0	0	0	0	0	1	0	0	13640	943	33	3	715	3	RORB	9	77275592	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	18353	77275592	63937839	853	130340											
TRPM6	140803	broad.mit.edu	37	chr9	77397635	77397635	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctccgtatatcatccaGtatggctcaaatacaatatc	4	11	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77397635	T	T	77397635	4	4	151	1	0	0	0	0	0	1	0	0	16715	1024	36	3	3086	3	TRPM6	9	77397635	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	122043	77397635	63815796	854	130341											
FLJ46321	389763	broad.mit.edu	37	chr9	84609145	84609145	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacatgggaacttcccagGtggtgcatgtccacttggag	15	9	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84609145	A	A	84609145	3	1	151	1	0	0	0	0	1	0	0	0	5990	1261	44	4	3774	4	FLJ46321	9	84609145	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	7211510	84609145	56604286	855	130342											
FRMD3	257019	broad.mit.edu	37	chr9	86152983	86152983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtgccccgcgccctcgCccggttccacgcgcacctgg	13	20	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86152983	A	A	86152983	1	1	151	0	1	0	0	0	0	0	0	0	6110	754	26	3		3	FRMD3	9	86152983	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1543838	86152983	55060448	856	130343											
KIF27	55582	broad.mit.edu	37	chr9	86473945	86473945	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtgccaggtgaactcactAcatctgacaaaatctcaagg	8	10	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86473945	T	T	86473945	1	4	151	0	1	0	0	0	0	0	0	0	8366	406	14	5		5	KIF27	9	86473945	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	320962	86473945	54739486	857	130344											
SECISBP2	79048	broad.mit.edu	37	chr9	91940984	91940984	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaacaatgtagtataatgcGagcctactccttgtgcccca	7	13	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91940984	C	C	91940984	1	2	151	0	1	0	0	0	0	0	0	0	14119	1073	37	4		4	SECISBP2	9	91940984	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	5467039	91940984	49272447	858	130345											
SECISBP2	79048	broad.mit.edu	37	chr9	91943769	91943769	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgacatttctcttctaagaGaagtagtaaaaccagctgca	7	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91943769	C	C	91943769	3	2	151	1	0	0	0	0	1	0	0	0	14119	943	33	4	787	4	SECISBP2	9	91943769	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2785	91943769	49269662	859	130346											
SPTLC1	10558	broad.mit.edu	37	chr9	94821469	94821469	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagaatcataccttttgatCttcgatctcttgttctttta	4	8	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94821469	T	T	94821469	3	4	151	1	0	0	0	0	1	0	0	0	15241	913	32	4	775	4	SPTLC1	9	94821469	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2877700	94821469	46391962	860	130347											
CENPP	401541	broad.mit.edu	37	chr9	95099903	95099903	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacttgaatttcagattctgGaaattcaggtaaattaagaa	7	4	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95099903	T	T	95099903	4	4	151	1	0	0	0	0	0	1	0	0	3270	1175	41	3	380	3	CENPP	9	95099903	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	278434	95099903	46113528	861	130348											
ZNF169	169841	broad.mit.edu	37	chr9	97062215	97062215	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttcccaagctcatctgcAggaggtgacttccaactaga	8	12	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97062215	T	T	97062215	2	4	151	1	0	0	0	0	0	0	0	1	17868	175	7	5		5	ZNF169	9	97062215	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	1962312	97062215	44151216	862	130349											
ZNF189	7743	broad.mit.edu	37	chr9	104170866	104170866	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaaagccttcagttggaaAtcacaccttattgagcatca	9	9	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104170866	G	G	104170866	2	3	151	1	0	0	0	0	0	0	0	1	17880	98	4	5		5	ZNF189	9	104170866	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	7108651	104170866	37042565	863	130350											
SVEP1	79987	broad.mit.edu	37	chr9	113241856	113241856	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcgcagttgtaaatgactCagaaaggttatgaaagcctt	9	6	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113241856	A	A	113241856	1	1	151	0	1	0	0	0	0	0	0	0	15538	841	29	3		3	SVEP1	9	113241856	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	9070990	113241856	27971575	864	130351											
TLR4	7099	broad.mit.edu	37	chr9	120474985	120474985	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaaagtatttattgcacAgacttgcgggttctacatca	7	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120474985	C	C	120474985	2	2	151	1	0	0	0	0	0	0	0	1	16076	175	7	5		5	TLR4	9	120474985	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	7233129	120474985	20738446	865	130352											
TLR4	7099	broad.mit.edu	37	chr9	120475619	120475619	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaccagcctaaagtatttaGatctgagcttcaatggtgtt	8	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120475619	A	A	120475619	3	1	151	1	0	0	0	0	1	0	0	0	16076	942	33	4	1223	4	TLR4	9	120475619	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	634	120475619	20737812	866	130353											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123253727	123253727	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctttcattcacttcattgCgtaatttttcaacttcattt	2	10	6	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123253727	G	G	123253727	3	3	151	1	0	0	0	0	1	0	0	0	3176	768	27	4	4445	4	CDK5RAP2	9	123253727	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2778108	123253727	17959704	867	130354											
CEP110	11064	broad.mit.edu	37	chr9	123935822	123935822	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctattctctgggttcgtaGgattgaccacctcccccagc	9	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123935822	A	A	123935822	1	1	151	0	1	0	0	0	0	0	0	0	3275	1015	35	4		4	CEP110	9	123935822	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	682095	123935822	17277609	868	130355											
OR1N2	138882	broad.mit.edu	37	chr9	125315694	125315694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtacttctttctggccaaCctgtcattaactgatgcctg	7	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125315694	A	A	125315694	3	1	151	1	0	0	0	0	1	0	0	0	11064	506	18	3	248	3	OR1N2	9	125315694	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1379872	125315694	15897737	869	130356											
RC3H2	54542	broad.mit.edu	37	chr9	125639640	125639640	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcatgagctatggtgccCagcccttaacttgcattttt	9	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125639640	T	T	125639640	1	4	151	0	1	0	0	0	0	0	0	0	13275	609	21	4		4	RC3H2	9	125639640	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	323946	125639640	15573791	870	130357											
SCAI	286205	broad.mit.edu	37	chr9	127730875	127730875	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcttgtctgcaaggtcttCaaaaaactctgctaaagagt	9	8	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127730875	T	T	127730875	1	4	151	0	1	0	0	0	0	0	0	0	13981	841	29	4		4	SCAI	9	127730875	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2091235	127730875	13482556	871	130358											
RALGPS1	9649	broad.mit.edu	37	chr9	129961451	129961451	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctgccccacccaccccatGaggctgctctgtggctcctt	8	20	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129961451	T	T	129961451	1	4	151	0	1	0	0	0	0	0	0	0	13125	1305	45	3		3	RALGPS1	9	129961451	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2230576	129961451	11251980	872	130359											
GARNL3	84253	broad.mit.edu	37	chr9	130127662	130127662	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgtaagttaaggatgtgCttttatctttatttgcttaa	7	4	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130127662	T	T	130127662	1	4	151	0	1	0	0	0	0	0	0	0	6303	812	28	4		4	GARNL3	9	130127662	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	166211	130127662	11085769	873	130360											
DNM1	1759	broad.mit.edu	37	chr9	131010350	131010350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgcagtggctcacacctGtaaacccaacactttgggag	11	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131010350	T	T	131010350	1	4	151	0	1	0	0	0	0	0	0	0	4710	1392	48	3		3	DNM1	9	131010350	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	882688	131010350	10203081	874	130361											
SPTAN1	6709	broad.mit.edu	37	chr9	131369914	131369914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggatcaatggaatacggGggttggtgtcctcagatgag	15	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131369914	T	T	131369914	3	4	151	1	0	0	0	0	1	0	0	0	15235	1232	43	2	4200	2	SPTAN1	9	131369914	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	359564	131369914	9843517	875	130362											
NUP188	23511	broad.mit.edu	37	chr9	131730714	131730714	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattgagaccctttctttaaAaaatgttctttaagtactgt	6	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131730714	T	T	131730714	1	4	151	0	1	0	0	0	0	0	0	0	10853	29	1	5		5	NUP188	9	131730714	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	360800	131730714	9482717	876	130363											
NUP188	23511	broad.mit.edu	37	chr9	131752577	131752577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgattacaaaagacatGctcaggccacgtgcagcggc	10	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131752577	T	T	131752577	1	4	151	0	1	0	0	0	0	0	0	0	10853	1334	46	3		3	NUP188	9	131752577	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	21863	131752577	9460854	877	130364											
DOLPP1	57171	broad.mit.edu	37	chr9	131847036	131847036	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcatcatatttaagcggGagctgcacacggtgagtctg	11	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131847036	T	T	131847036	4	4	151	1	0	0	0	0	0	1	0	0	4744	1175	41	3	172	3	DOLPP1	9	131847036	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	94459	131847036	9366395	878	130365											
PPAPDC3	84814	broad.mit.edu	37	chr9	134165627	134165627	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccttcaagggcatcgcCttcaactccctgctggccat	7	18	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165627	A	A	134165627	2	1	151	1	0	0	0	0	0	0	0	1	12392	668	24	2		2	PPAPDC3	9	134165627	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2318591	134165627	7047804	879	130366											
C9orf171	389799	broad.mit.edu	37	chr9	135357749	135357749	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtttatgactcctcagCggtgcagaaagttattcctt	8	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135357749	A	A	135357749	3	1	151	1	0	0	0	0	1	0	0	0	2496	768	27	3	254	3	C9orf171	9	135357749	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1192122	135357749	5855682	880	130367											
BARHL1	56751	broad.mit.edu	37	chr9	135464640	135464640	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggaagcgacagacggccGtcgggttggagctgctggcg	18	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135464640	A	A	135464640	3	1	151	1	0	0	0	0	1	0	0	0	1318	1145	40	4	725	4	BARHL1	9	135464640	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	106891	135464640	5748791	881	130368											
DDX31	64794	broad.mit.edu	37	chr9	135537745	135537745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaatgatgaacaagaacCcaggcatcagtgccaatatt	8	9	1	3	rs145631556	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135537745	T	T	135537745	1	4	151	0	1	0	0	0	0	0	0	0	4389	638	22	4		4	DDX31	9	135537745	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	73105	135537745	5675686	882	130369											
SURF6	6838	broad.mit.edu	37	chr9	136198959	136198959	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcacggatcttcacgccctCcgccttgtagaggaggttgg	13	12	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136198959	A	A	136198959	4	1	151	1	0	0	0	0	0	1	0	0	15524	864	30	3	257	3	SURF6	9	136198959	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	661214	136198959	5014472	883	130370											
ADAMTS13	11093	broad.mit.edu	37	chr9	136302803	136302803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcaaaggatgaagctggGtgggggctgggggacttgcc	20	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136302803	T	T	136302803	1	4	151	0	1	0	0	0	0	0	0	0	258	1276	44	3		3	ADAMTS13	9	136302803	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	103844	136302803	4910628	884	130371											
ADAMTS13	11093	broad.mit.edu	37	chr9	136303560	136303560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagcccagagcgttggtGcaggggctgctcaggtcaca	14	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136303560	T	T	136303560	1	4	151	0	1	0	0	0	0	0	0	0	258	1334	46	3		3	ADAMTS13	9	136303560	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	757	136303560	4909871	885	130372											
EGFL7	51162	broad.mit.edu	37	chr9	139564532	139564532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatgtcctggggttactGctggcccatgagtgggtggt	16	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139564532	T	T	139564532	1	4	151	0	1	0	0	0	0	0	0	0	5004	1334	46	3		3	EGFL7	9	139564532	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3260972	139564532	1648899	886	130373											
C9orf86	55684	broad.mit.edu	37	chr9	139722846	139722846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtggagtagagcacccGctggagctgggggctgagtg	21	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139722846	T	T	139722846	1	4	151	0	1	0	0	0	0	0	0	0	2528	1102	38	3		3	C9orf86	9	139722846	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	158314	139722846	1490585	887	130374											
CACNA1B	774	broad.mit.edu	37	chr9	140972745	140972745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcccctcccagtgccaCgtcttgtctcggtacagctc	9	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140972745	A	A	140972745	1	1	151	0	1	0	0	0	0	0	0	0	2565	551	19	3		3	CACNA1B	9	140972745	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1249899	140972745	240686	888	130375											
ADARB2	105	broad.mit.edu	37	chr10	1279755	1279755	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccttcttttaaccgcacgAatatcgatcgctctgagtcc	6	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1279755	T	T	1279755	3	4	151	1	0	0	0	0	1	0	0	0	283	246	9	5	845	5	ADARB2	10	1279755	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08		1279755	134254992	889	130376											
AKR1E2	83592	broad.mit.edu	37	chr10	4872893	4872893	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagggaaagtgaccgaggcAgtgaaagaggccattgacgc	15	9	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4872893	G	G	4872893	2	3	151	1	0	0	0	0	0	0	0	1	474	175	7	5		5	AKR1E2	10	4872893	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	3593138	4872893	130661854	890	130377											
AKR1C2	1646	broad.mit.edu	37	chr10	5041540	5041540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagccatgctctgaggtaCatttaaggacactaatcctc	7	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5041540	A	A	5041540	1	1	151	0	1	0	0	0	0	0	0	0	470	493	17	3		3	AKR1C2	10	5041540	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	168647	5041540	130493207	891	130378											
TUBAL3	79861	broad.mit.edu	37	chr10	5436254	5436254	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggacagagttataaggctcTaccacagcagtggagatcct	11	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5436254	A	A	5436254	2	1	151	1	0	0	0	0	0	0	0	1	16877	1509	53	5		5	TUBAL3	10	5436254	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	394714	5436254	130098493	892	130379											
IL15RA	3601	broad.mit.edu	37	chr10	6001727	6001727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacacttaccagtggtgtcGctgtggccctgtggatacac	11	12	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6001727	T	T	6001727	3	4	151	1	0	0	0	0	1	0	0	0	7702	1078	38	3	209	3	IL15RA	10	6001727	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	565473	6001727	129533020	893	130380											
ITIH5	80760	broad.mit.edu	37	chr10	7658913	7658913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaataggttccctcagCaaaaaaataccgctagtctc	7	11	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7658913	A	A	7658913	1	1	151	0	1	0	0	0	0	0	0	0	7977	725	25	3		3	ITIH5	10	7658913	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1657186	7658913	127875834	894	130381											
ITIH5	80760	broad.mit.edu	37	chr10	7684117	7684117	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattttggtggtagtggaaCatctttttttttttccacaa	8	6	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7684117	T	T	7684117	1	4	151	0	1	0	0	0	0	0	0	0	7977	493	17	4		4	ITIH5	10	7684117	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	25204	7684117	127850630	895	130382											
USP6NL	9712	broad.mit.edu	37	chr10	11504534	11504534	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatggatatccagatggaCtggcatcttctgcggccggt	12	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11504534	T	T	11504534	3	4	151	1	0	0	0	0	1	0	0	0	17214	565	20	4	97	4	USP6NL	10	11504534	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3820417	11504534	124030213	896	130383											
SEC61A2	55176	broad.mit.edu	37	chr10	12198007	12198007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacccatcgtgtcgcagtacAtgcctagagccgttctggtt	10	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12198007	G	G	12198007	1	3	151	0	1	0	0	0	0	0	0	0	14114	232	8	5		5	SEC61A2	10	12198007	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	693473	12198007	123336740	897	130384											
ITGA8	8516	broad.mit.edu	37	chr10	15702827	15702827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtaattccatcaaggaGcacctatacaagaaaatacc	6	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15702827	T	T	15702827	1	4	151	0	1	0	0	0	0	0	0	0	7952	986	34	3		3	ITGA8	10	15702827	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3504820	15702827	119831920	898	130385											
CUBN	8029	broad.mit.edu	37	chr10	16942581	16942581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattatgagttcatactataCatcactaaaaagaaaatcaa	3	6	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16942581	A	A	16942581	1	1	151	0	1	0	0	0	0	0	0	0	4084	493	17	3		3	CUBN	10	16942581	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1239754	16942581	118592166	899	130386											
CUBN	8029	broad.mit.edu	37	chr10	17130324	17130324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatagaaccgtaaggacCagtcaggatacctccacact	7	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17130324	A	A	17130324	3	1	151	1	0	0	0	0	1	0	0	0	4084	594	21	2	9297	2	CUBN	10	17130324	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	187743	17130324	118404423	900	130387											
PLXDC2	84898	broad.mit.edu	37	chr10	20290820	20290820	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttctcaaggcggtagacAcgaaccgagcaagcgtcggc	12	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20290820	G	G	20290820	3	3	151	1	0	0	0	0	1	0	0	0	12213	159	6	5	235	5	PLXDC2	10	20290820	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	3160496	20290820	115243927	901	130388											
C10orf140	387640	broad.mit.edu	37	chr10	21804386	21804386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggtgtctgaaggacaggtCgctttcccagtactagtgtc	13	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21804386	A	A	21804386	3	1	151	1	0	0	0	0	1	0	0	0	1606	884	31	3	364	3	C10orf140	10	21804386	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1513566	21804386	113730361	902	130389											
SPAG6	9576	broad.mit.edu	37	chr10	22700005	22700005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgactttttgtaacaagtGgtggccttaaaaaagttcaa	9	6	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22700005	T	T	22700005	3	4	151	1	0	0	0	0	1	0	0	0	15098	1348	47	2	1398	2	SPAG6	10	22700005	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	895619	22700005	112834742	903	130390											
KIAA1217	56243	broad.mit.edu	37	chr10	24810606	24810606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgtgtgagccaccctGtggcttgtgaactctgcact	12	10	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24810606	T	T	24810606	1	4	151	0	1	0	0	0	0	0	0	0	8286	1392	48	3		3	KIAA1217	10	24810606	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2110601	24810606	110724141	904	130391											
ARHGAP21	57584	broad.mit.edu	37	chr10	24880745	24880745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctgtctgaccaaatagCggctgcccgtgaaaatgaat	9	11	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24880745	A	A	24880745	1	1	151	0	1	0	0	0	0	0	0	0	873	783	27	3		3	ARHGAP21	10	24880745	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	70139	24880745	110654002	905	130392											
GPR158	57512	broad.mit.edu	37	chr10	25887285	25887285	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcatagcaagcgccaaGgagaagactcttggattagc	12	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887285	A	A	25887285	2	1	151	1	0	0	0	0	0	0	0	1	6728	991	35	4		4	GPR158	10	25887285	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1006540	25887285	109647462	906	130393											
MYO3A	53904	broad.mit.edu	37	chr10	26286106	26286106	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggacttcaacatttgcatAacaacaaaactatccacaga	5	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26286106	T	T	26286106	3	4	151	1	0	0	0	0	1	0	0	0	10170	362	13	5	441	5	MYO3A	10	26286106	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	398821	26286106	109248641	907	130394											
SVIL	6840	broad.mit.edu	37	chr10	29819446	29819446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggtctcaaactcctggcCtcaagtgattctcctgcctt	8	14	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29819446	A	A	29819446	1	1	151	0	1	0	0	0	0	0	0	0	15539	696	24	2		2	SVIL	10	29819446	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3533340	29819446	105715301	908	130395											
KIAA1462	57608	broad.mit.edu	37	chr10	30336559	30336559	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcactcacatgtcctttcccCgcggacgtcttacgatgtgc	8	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30336559	G	G	30336559	2	3	151	1	0	0	0	0	0	0	0	1	8304	639	23	4		4	KIAA1462	10	30336559	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	517113	30336559	105198188	909	130396											
ZEB1	6935	broad.mit.edu	37	chr10	31809741	31809741	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgttcctcaaaatttaaAaaaagaaaatccagtcgcta	5	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31809741	G	G	31809741	3	3	151	1	0	0	0	0	1	0	0	0	17749	14	1	5	1518	5	ZEB1	10	31809741	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1473182	31809741	103725006	910	130397											
KIF5B	3799	broad.mit.edu	37	chr10	32306960	32306960	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttactatcttgcagctaccaGaaaatatactctttagtacc	4	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32306960	A	A	32306960	1	1	151	0	1	0	0	0	0	0	0	0	8376	957	33	4		4	KIF5B	10	32306960	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	497219	32306960	103227787	911	130398											
NRP1	8829	broad.mit.edu	37	chr10	33496628	33496628	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcaggtgtatcatagttgTtgttgccctcaaaagactgt	10	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33496628	C	C	33496628	3	2	151	1	0	0	0	0	1	0	0	0	10755	1725	60	5	1183	5	NRP1	10	33496628	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1189668	33496628	102038119	912	130399											
NRP1	8829	broad.mit.edu	37	chr10	33502706	33502706	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcgactccatgctaagaAataaaatacaacatatggaa	8	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33502706	T	T	33502706	1	4	151	0	1	0	0	0	0	0	0	0	10755	29	1	5		5	NRP1	10	33502706	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	6078	33502706	102032041	913	130400											
ANKRD30A	91074	broad.mit.edu	37	chr10	37418836	37418836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaggactgctctacactgGgcctgtgtcaatggccatga	12	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37418836	T	T	37418836	3	4	151	1	0	0	0	0	1	0	0	0	658	1241	43	2	75	2	ANKRD30A	10	37418836	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3916130	37418836	98115911	914	130401											
ANKRD30A	91074	broad.mit.edu	37	chr10	37451742	37451742	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtctgtcccaaataaagcCttggaattgaaaaatgaaca	7	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37451742	G	G	37451742	2	3	151	1	0	0	0	0	0	0	0	1	658	668	24	4		4	ANKRD30A	10	37451742	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	32906	37451742	98083005	915	130402											
RET	5979	broad.mit.edu	37	chr10	43608348	43608348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagcaccaagacctgcCccgacggccactgcgatgtt	9	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43608348	A	A	43608348	3	1	151	1	0	0	0	0	1	0	0	0	13343	623	22	2	1730	2	RET	10	43608348	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6156606	43608348	91926399	916	130403											
FXYD4	53828	broad.mit.edu	37	chr10	43870198	43870198	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtagacaaagtgggatggggGattaaacctggtctctgtga	15	5	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43870198	T	T	43870198	1	4	151	0	1	0	0	0	0	0	0	0	6180	1189	41	3		3	FXYD4	10	43870198	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	261850	43870198	91664549	917	130404											
FAM21C	253725	broad.mit.edu	37	chr10	46254832	46254832	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaaaaaggcttattttcaGatgaggaggactctgaggta	11	6	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46254832	T	T	46254832	3	4	151	1	0	0	0	0	1	0	0	0	5589	942	33	3	1684	3	FAM21C	10	46254832	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2384634	46254832	89279915	918	130405											
CHAT	1103	broad.mit.edu	37	chr10	50863104	50863104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttatgatttcccaagaatAaattaccatgtgccattcat	5	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50863104	T	T	50863104	1	4	151	0	1	0	0	0	0	0	0	0	3344	377	13	5		5	CHAT	10	50863104	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	4608272	50863104	84671643	919	130406											
CHAT	1103	broad.mit.edu	37	chr10	50870609	50870609	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctggagtcaccagcaGtcctgtagactacagagcag	13	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50870609	T	T	50870609	1	4	151	0	1	0	0	0	0	0	0	0	3344	1044	36	3		3	CHAT	10	50870609	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	7505	50870609	84664138	920	130407											
C10orf53	282966	broad.mit.edu	37	chr10	50901862	50901862	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtcatcctagagaagaTagaagactggaatgtggtgg	15	4	1	5	rs147880636	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50901862	A	A	50901862	3	1	151	1	0	0	0	0	1	0	0	0	1617	1406	49	5	146	5	C10orf53	10	50901862	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	31253	50901862	84632885	921	130408											
OGDHL	55753	broad.mit.edu	37	chr10	50953905	50953905	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggctgccacactgcacacaTatatcacagcctctgggtca	8	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50953905	C	C	50953905	3	2	151	1	0	0	0	0	1	0	0	0	10935	1406	49	5	1669	5	OGDHL	10	50953905	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	52043	50953905	84580842	922	130409											
ASAH2	56624	broad.mit.edu	37	chr10	52003183	52003183	+	Intron	DEL	A	-	-													gaaaccaggcacaaacatacAatatagacgactgcagaaaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52003183	-	-	52003183	6	5	151	0	1	1	0	1	0	0	0	0	1011	145	5	0		0	ASAH2	10	52003183	Intron	DEL	A	TCGA-50-5049-01A-01D-1625-08	1049278	52003183	83531564	923	130410											
A1CF	29974	broad.mit.edu	37	chr10	52580476	52580476	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaagtgatatattttaGcatctagctgcaaagagtat	8	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52580476	T	T	52580476	1	4	151	0	1	0	0	0	0	0	0	0	2	986	34	3		3	A1CF	10	52580476	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	577293	52580476	82954271	924	130411											
A1CF	29974	broad.mit.edu	37	chr10	52603893	52603893	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccattttcctgcaaatccAgggcaggtgtgaaggagagg	14	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52603893	T	T	52603893	1	4	151	0	1	0	0	0	0	0	0	0	2	203	7	5		5	A1CF	10	52603893	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	23417	52603893	82930854	925	130412											
PRKG1	5592	broad.mit.edu	37	chr10	53564495	53564495	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagtgtttactttcctttTagccctattatctgaaatgc	7	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53564495	C	C	53564495	1	2	151	0	1	0	0	0	0	0	0	0	12628	1769	61	5		5	PRKG1	10	53564495	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	960602	53564495	81970252	926	130413											
MBL2	4153	broad.mit.edu	37	chr10	54527923	54527923	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggaactcacagacggccaGatgggaggtggagcagggga	19	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54527923	A	A	54527923	2	1	151	1	0	0	0	0	0	0	0	1	9443	933	33	4		4	MBL2	10	54527923	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	963428	54527923	81006824	927	130414											
PCDH15	65217	broad.mit.edu	37	chr10	55698648	55698648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcgaagtacatagcttgtCctggtctcataatccagagg	9	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55698648	A	A	55698648	3	1	151	1	0	0	0	0	1	0	0	0	11605	854	30	3	4222	3	PCDH15	10	55698648	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1170725	55698648	79836099	928	130415											
PCDH15	65217	broad.mit.edu	37	chr10	56138580	56138580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggtgctgttcaggaaaaGcatttgcttaacaggatcca	10	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138580	T	T	56138580	3	4	151	1	0	0	0	0	1	0	0	0	11605	971	34	3	7351	3	PCDH15	10	56138580	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	439932	56138580	79396167	929	130416											
ANK3	288	broad.mit.edu	37	chr10	61958062	61958062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaaggaagatgtatttggGgggacagagcaggattctga	16	4	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958062	T	T	61958062	1	4	151	0	1	0	0	0	0	0	0	0	622	1247	43	2		2	ANK3	10	61958062	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	5819482	61958062	73576685	930	130417											
TMEM26	219623	broad.mit.edu	37	chr10	63170401	63170401	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaaggggccatcttgtatGaagacgctgattccgatgtt	13	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63170401	A	A	63170401	2	1	151	1	0	0	0	0	0	0	0	1	16274	1281	45	4		4	TMEM26	10	63170401	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1212339	63170401	72364346	931	130418											
ZNF365	22891	broad.mit.edu	37	chr10	64159206	64159206	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtaggagagattgtgccatGagtaattattcttttaaggt	11	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64159206	T	T	64159206	1	4	151	0	1	0	0	0	0	0	0	0	17995	1305	45	3		3	ZNF365	10	64159206	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	988805	64159206	71375541	932	130419											
JMJD1C	221037	broad.mit.edu	37	chr10	64975022	64975022	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaagtgggtcctaCctcctcgtgatatataatca	6	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64975022	A	A	64975022	5	1	151	1	0	0	0	0	0	0	1	0	8020	521	18	3	6686	3	JMJD1C	10	64975022	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	815816	64975022	70559725	933	130420											
JMJD1C	221037	broad.mit.edu	37	chr10	64976995	64976995	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcataacgatcatggtgcggGtgaagagatcatgatgagta	13	5	3	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64976995	A	A	64976995	3	1	151	1	0	0	0	0	1	0	0	0	8020	1261	44	4	7060	4	JMJD1C	10	64976995	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1973	64976995	70557752	934	130421											
NEUROG3	50674	broad.mit.edu	37	chr10	71332358	71332358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgccggcggctccagcgCgtacaagctgtggtccgcta	15	15	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71332358	A	A	71332358	3	1	151	1	0	0	0	0	1	0	0	0	10449	768	27	3	206	3	NEUROG3	10	71332358	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6355363	71332358	64202389	935	130422											
LRRC20	55222	broad.mit.edu	37	chr10	72083577	72083577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgtggcccatgagcgcCtcgtgcagcagcccagggcc	14	16	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72083577	A	A	72083577	1	1	151	0	1	0	0	0	0	0	0	0	9064	696	24	2		2	LRRC20	10	72083577	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	751219	72083577	63451170	936	130423											
UNC5B	219699	broad.mit.edu	37	chr10	73050606	73050606	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccctttccagggacccaGggcctccctgattgccccag	10	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73050606	A	A	73050606	1	1	151	0	1	0	0	0	0	0	0	0	17118	1015	35	4		4	UNC5B	10	73050606	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	967029	73050606	62484141	937	130424											
DYDC2	84332	broad.mit.edu	37	chr10	82126745	82126745	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgatttacttctctcaAagctagaagccaagaaaatg	6	9	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82126745	T	T	82126745	1	4	151	0	1	0	0	0	0	0	0	0	4879	29	1	5		5	DYDC2	10	82126745	3'UTR	SNP	A	TCGA-50-5049-01A-01D-1625-08	9076139	82126745	53408002	938	130425											
MARCH5	54708	broad.mit.edu	37	chr10	94111070	94111070	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttgtgataagctgctgctCctatattttttaagaaatat	6	6	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94111070	T	T	94111070	1	4	151	0	1	0	0	0	0	0	0	0	9396	870	30	4		4	MARCH5	10	94111070	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	11984325	94111070	41423677	939	130426											
RBP4	5950	broad.mit.edu	37	chr10	95360226	95360226	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcggtgtctgtgaaggtGcccaccatgtctgcgcacac	11	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95360226	C	C	95360226	2	2	151	1	0	0	0	0	0	0	0	1	13266	1306	46	4		4	RBP4	10	95360226	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1249156	95360226	40174521	940	130427											
PIK3AP1	118788	broad.mit.edu	37	chr10	98408476	98408476	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttctcagcgatggtgttGgggtagtggccatgcttgtt	15	6	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98408476	A	A	98408476	2	1	151	1	0	0	0	0	0	0	0	1	12003	1335	47	4		4	PIK3AP1	10	98408476	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3048250	98408476	37126271	941	130428											
HPSE2	60495	broad.mit.edu	37	chr10	100453571	100453571	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaggatagcttattaaaTgtcagttatgaacttagtga	9	3	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100453571	C	C	100453571	1	2	151	0	1	0	0	0	0	0	0	0	7412	1479	51	5		5	HPSE2	10	100453571	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	2045095	100453571	35081176	942	130429											
OBFC1	79991	broad.mit.edu	37	chr10	105659991	105659991	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttggagcagctgtagttgTttagagccagagggaaagag	15	5	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105659991	C	C	105659991	1	2	151	0	1	0	0	0	0	0	0	0	10902	1740	60	5		5	OBFC1	10	105659991	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	5206420	105659991	29874756	943	130430											
CCDC147	159686	broad.mit.edu	37	chr10	106160471	106160471	+	Frame_Shift_Del	DEL	C	-	-													gagatatcctggggtctcagCttgttcggcgcaatgatgag							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	106160471	-	-	106160471	7	5	151	1	0	1	0	1	0	0	0	0	2807	797	28	0	1899	0	CCDC147	10	106160471	Frame_Shift_Del	DEL	C	TCGA-50-5049-01A-01D-1625-08	500480	106160471	29374276	944	130431											
SORCS3	22986	broad.mit.edu	37	chr10	106907445	106907445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatggaaccagaacgacaCgtacaacctctacatctcag	7	12	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106907445	A	A	106907445	3	1	151	1	0	0	0	0	1	0	0	0	15046	536	19	3	1407	3	SORCS3	10	106907445	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	746974	106907445	28627302	945	130432											
SORCS1	114815	broad.mit.edu	37	chr10	108367013	108367013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagtggtgggtaagccagGgagcaccgccaccaggatgt	16	10	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108367013	C	C	108367013	3	2	151	1	0	0	0	0	1	0	0	0	15044	1232	43	4	680	4	SORCS1	10	108367013	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1459568	108367013	27167734	946	130433											
KCNK18	338567	broad.mit.edu	37	chr10	118957067	118957067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggaaagctcttccctgGcctctgcttcctctgctttc	8	16	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118957067	T	T	118957067	3	4	151	1	0	0	0	0	1	0	0	0	8135	1203	42	3	70	3	KCNK18	10	118957067	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	10590054	118957067	16577680	947	130434											
KCNK18	338567	broad.mit.edu	37	chr10	118969481	118969481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgaagttggacagcagGtggagaggttggacatcccc	16	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118969481	T	T	118969481	3	4	151	1	0	0	0	0	1	0	0	0	8135	1261	44	3	836	3	KCNK18	10	118969481	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	12414	118969481	16565266	948	130435											
PDZD8	118987	broad.mit.edu	37	chr10	119043175	119043175	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtaggcaagcccctgtaCagatcacgaccaatttcttt	7	12	3	1	rs147188948		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119043175	A	A	119043175	2	1	151	1	0	0	0	0	0	0	0	1	11799	465	17	3		3	PDZD8	10	119043175	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	73694	119043175	16491572	949	130436											
CPXM2	119587	broad.mit.edu	37	chr10	125506513	125506513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccagggttcaggaggcGccagtaatccccatcgttgg	12	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125506513	T	T	125506513	3	4	151	1	0	0	0	0	1	0	0	0	3870	1087	38	3	236	3	CPXM2	10	125506513	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6463338	125506513	10028234	950	130437											
FAM175B	23172	broad.mit.edu	37	chr10	126490341	126490341	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgccaaggggtcgggcCgtccggaaggccgtgtgccc	17	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126490341	T	T	126490341	1	4	151	0	1	0	0	0	0	0	0	0	5543	667	23	4		4	FAM175B	10	126490341	5'Flank	SNP	C	TCGA-50-5049-01A-01D-1625-08	983828	126490341	9044406	951	130438											
C10orf90	118611	broad.mit.edu	37	chr10	128150158	128150158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcatgtgtaatctcctaGgagagaagatttagaatccc	9	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128150158	A	A	128150158	1	1	151	0	1	0	0	0	0	0	0	0	1634	1015	35	4		4	C10orf90	10	128150158	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1659817	128150158	7384589	952	130439											
PSMD13	5719	broad.mit.edu	37	chr11	239091	239091	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaggtaaataatttgctAtaccagattagattatatga	6	3	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	239091	G	G	239091	1	3	151	0	1	0	0	0	0	0	0	0	12802	464	16	5		5	PSMD13	11	239091	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08		239091	134767425	953	130440											
IFITM2	10581	broad.mit.edu	37	chr11	308077	308077	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcccttatctggccctgGccagctctgcatttgacaaa	8	14	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	308077	T	T	308077	1	4	151	0	1	0	0	0	0	0	0	0	7597	1218	42	3		3	IFITM2	11	308077	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	68986	308077	134698439	954	130441											
CDHR5	53841	broad.mit.edu	37	chr11	619418	619419	+	Intron	DNP	TA	CT	CT													aggaaggggcttgtccctccTagacacatctttaagcccca							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	619419	CT	CT	619418	1	2	151	0	1	0	0	0	0	0	0	0	3152	1537	53	5		5	CDHR5	11	619418	Intron	DNP	TA	TCGA-50-5049-01A-01D-1625-08	311341	619418	134387098	955	130442											
KRTAP5-4	387267	broad.mit.edu	37	chr11	1643105	1643105	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccccttggagcccccacaGgagccacagctggagcagga	12	17	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1643105	T	T	1643105	2	4	151	1	0	0	0	0	0	0	0	1	8635	987	35	2		2	KRTAP5-4	11	1643105	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1023687	1643105	133363411	956	130443											
TNNT3	7140	broad.mit.edu	37	chr11	1944164	1944164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctgcctggctcgggacCctggccccttggcttctgtg	12	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1944164	A	A	1944164	1	1	151	0	1	0	0	0	0	0	0	0	16455	638	22	2		2	TNNT3	11	1944164	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	301059	1944164	133062352	957	130444											
ART5	116969	broad.mit.edu	37	chr11	3661177	3661177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagcgaaggctgcccacaCctcggaacaccacctcccca	7	19	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3661177	A	A	3661177	3	1	151	1	0	0	0	0	1	0	0	0	1004	507	18	3	405	3	ART5	11	3661177	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1717013	3661177	131345339	958	130445											
OR52K2	119774	broad.mit.edu	37	chr11	4470650	4470650	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcctggaacacctgcacatCtggatctccatccctttctg	8	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4470650	A	A	4470650	2	1	151	1	0	0	0	0	0	0	0	1	11218	903	32	3		3	OR52K2	11	4470650	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	809473	4470650	130535866	959	130446											
OR52R1	119695	broad.mit.edu	37	chr11	4824945	4824945	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcacagctctcaaaatcatCacgtatgacataccaatgac	5	12	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4824945	A	A	4824945	2	1	151	1	0	0	0	0	0	0	0	1	11225	813	29	3		3	OR52R1	11	4824945	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	354295	4824945	130181571	960	130447											
OR51T1	401665	broad.mit.edu	37	chr11	4904034	4904034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaagaccaagacaatccGccaggctatgttccagctgc	9	13	0	3	rs151076376	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4904034	T	T	4904034	3	4	151	1	0	0	0	0	1	0	0	0	11200	1087	38	3	988	3	OR51T1	11	4904034	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	79089	4904034	130102482	961	130448											
OR52A1	23538	broad.mit.edu	37	chr11	5173072	5173072	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacagtaggagtgggagatGactgttgtgtgataaaattg	14	3	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5173072	T	T	5173072	2	4	151	1	0	0	0	0	0	0	0	1	11202	1277	45	3		3	OR52A1	11	5173072	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	269038	5173072	129833444	962	130449											
OR51V1	283111	broad.mit.edu	37	chr11	5221658	5221658	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcccccacaggatcccCagcactgtgtacacagtgga	9	14	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5221658	A	A	5221658	2	1	151	1	0	0	0	0	0	0	0	1	11201	581	21	2		2	OR51V1	11	5221658	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	48586	5221658	129784858	963	130450											
TRIM22	10346	broad.mit.edu	37	chr11	5729478	5729478	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtattccgagtaccagatctGagtgggatgctgcaagttct	12	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5729478	T	T	5729478	2	4	151	1	0	0	0	0	0	0	0	1	16620	1277	45	3		3	TRIM22	11	5729478	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	507820	5729478	129277038	964	130451											
OR56B1	387748	broad.mit.edu	37	chr11	5758676	5758676	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaagaacttagggcagcCttccaaaaggtgctgtttgc	10	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5758676	A	A	5758676	2	1	151	1	0	0	0	0	0	0	0	1	11231	668	24	2		2	OR56B1	11	5758676	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	29198	5758676	129247840	965	130452											
OR52N5	390075	broad.mit.edu	37	chr11	5799256	5799256	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attagaccatagattacattGaccttgatgctggcacaaga	8	8	0	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5799256	T	T	5799256	2	4	151	1	0	0	0	0	0	0	0	1	11224	1277	45	3		3	OR52N5	11	5799256	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	40580	5799256	129207260	966	130453											
CCKBR	887	broad.mit.edu	37	chr11	6292047	6292047	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgccaggtggggctggaccAcgtgagcaaaatctgggcga	16	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6292047	T	T	6292047	1	4	151	0	1	0	0	0	0	0	0	0	2909	174	6	5		5	CCKBR	11	6292047	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	492791	6292047	128714469	967	130454											
HPX	3263	broad.mit.edu	37	chr11	6461961	6461961	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattcccatgggcactagtcCtagggagaacaaaatagata	9	9	0	2	rs113971031		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6461961	G	G	6461961	5	3	151	1	0	0	0	0	0	0	1	0	7413	695	24	4	1341	4	HPX	11	6461961	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	169914	6461961	128544555	968	130455											
OR2AG2	338755	broad.mit.edu	37	chr11	6789843	6789844	+	Missense_Mutation	DNP	CC	AA	AA													cctgtcataggccatgaaggCcagtaggaggtcctcagcgc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6789844	AA	AA	6789843	3	1	151	1	0	0	0	0	1	0	0	0	11079	739	26	3	608	3	OR2AG2	11	6789843	Missense_Mutation	DNP	CC	TCGA-50-5049-01A-01D-1625-08	327882	6789843	128216673	969	130456											
OR2D3	120775	broad.mit.edu	37	chr11	6942649	6942649	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgtcctatgaccggtaTgtggctgtctgcaagcccct	12	11	1	2	rs146817618		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6942649	C	C	6942649	2	2	151	1	0	0	0	0	0	0	0	1	11089	1471	51	5		5	OR2D3	11	6942649	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	152806	6942649	128063867	970	130457											
OR5P3	120066	broad.mit.edu	37	chr11	7847205	7847205	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactcggccgtaccaaacgtCactacagaacagagctgggc	10	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7847205	T	T	7847205	2	4	151	1	0	0	0	0	0	0	0	1	11273	813	29	4		4	OR5P3	11	7847205	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	904556	7847205	127159311	971	130458											
EIF3F	8665	broad.mit.edu	37	chr11	8008860	8008860	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctcctgatattcatgaaTgctgtcatttccgcttccgc	7	12	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8008860	C	C	8008860	1	2	151	0	1	0	0	0	0	0	0	0	5058	1479	51	5		5	EIF3F	11	8008860	5'Flank	SNP	T	TCGA-50-5049-01A-01D-1625-08	161655	8008860	126997656	972	130459											
RIC3	79608	broad.mit.edu	37	chr11	8158923	8158923	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcccgttacatgaaaacctAcctctcaccattaggtccca	5	15	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8158923	T	T	8158923	5	4	151	1	0	0	0	0	0	0	1	0	13463	405	14	5	595	5	RIC3	11	8158923	Splice_Site	SNP	A	TCGA-50-5049-01A-01D-1625-08	150063	8158923	126847593	973	130460											
HPS5	11234	broad.mit.edu	37	chr11	18313051	18313051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgtaactaagcttgataCtctccttcgctcttttcaag	5	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18313051	A	A	18313051	3	1	151	1	0	0	0	0	1	0	0	0	7409	565	20	3	1043	3	HPS5	11	18313051	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	10154128	18313051	116693465	974	130461											
NAV2	89797	broad.mit.edu	37	chr11	19854168	19854168	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagagcagattttaccttGggggtaatgagttacagtgg	14	4	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19854168	A	A	19854168	1	1	151	0	1	0	0	0	0	0	0	0	10278	1363	47	4		4	NAV2	11	19854168	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1541117	19854168	115152348	975	130462											
ANO3	63982	broad.mit.edu	37	chr11	26664740	26664740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgcagttttgcaatttGgttttaccaccatctttgtt	6	8	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26664740	T	T	26664740	3	4	151	1	0	0	0	0	1	0	0	0	698	1348	47	2	2377	2	ANO3	11	26664740	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6810572	26664740	108341776	976	130463											
KIF18A	81930	broad.mit.edu	37	chr11	28098612	28098612	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttatggcactgttgttggTagaatgatttaagttcattt	10	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28098612	C	C	28098612	3	2	151	1	0	0	0	0	1	0	0	0	8350	1638	57	5	1361	5	KIF18A	11	28098612	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1433872	28098612	106907904	977	130464											
CCDC73	493860	broad.mit.edu	37	chr11	32636435	32636435	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcactttgattttcatcctGagaaacaacagtatcaattt	4	8	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32636435	A	A	32636435	4	1	151	1	0	0	0	0	0	1	0	0	2874	1299	45	4	1822	4	CCDC73	11	32636435	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4537823	32636435	102370081	978	130465											
C11orf41	25758	broad.mit.edu	37	chr11	33564707	33564708	+	Frame_Shift_Ins	INS	-	A	A													ccagcagagggcagtgatggINSgtcccctcctgcaactagag							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33564708	A	A	33564707	7	5	151	1	0	1	1	0	0	0	0	0	1652	1232	43	0	709	0	C11orf41	11	33564707	Frame_Shift_Ins	INS	-	TCGA-50-5049-01A-01D-1625-08	928272	33564707	101441809	979	130466											
NAT10	55226	broad.mit.edu	37	chr11	34163375	34163375	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacgacctagtatgtccctGctcatggcctcgggagtccc	11	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34163375	C	C	34163375	1	2	151	0	1	0	0	0	0	0	0	0	10268	1334	46	4		4	NAT10	11	34163375	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	598668	34163375	100843141	980	130467											
TRIM44	54765	broad.mit.edu	37	chr11	35685179	35685179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaatggaagcagagagaGtggccaagaggaagtgtccg	16	5	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35685179	T	T	35685179	3	4	151	1	0	0	0	0	1	0	0	0	16644	1029	36	3	522	3	TRIM44	11	35685179	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1521804	35685179	99321337	981	130468											
LRP4	4038	broad.mit.edu	37	chr11	46894697	46894697	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccattgggccaacccaggtCtgtgttgatgaggaccttcc	12	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46894697	A	A	46894697	3	1	151	1	0	0	0	0	1	0	0	0	9046	913	32	3	1216	3	LRP4	11	46894697	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	11209518	46894697	88111819	982	130469											
LRP4	4038	broad.mit.edu	37	chr11	46896301	46896301	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacacaacctcacccatggGcgaccagaagcaaatctgtg	9	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46896301	C	C	46896301	1	2	151	0	1	0	0	0	0	0	0	0	9046	1218	42	4		4	LRP4	11	46896301	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1604	46896301	88110215	983	130470											
LRP4	4038	broad.mit.edu	37	chr11	46898324	46898325	+	Missense_Mutation	DNP	CC	AA	AA													tgatgtcctcatgctgtgagCcatccagattggcacgactg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	46898325	AA	AA	46898324	3	1	151	1	0	0	0	0	1	0	0	0	9046	739	26	3	2442	3	LRP4	11	46898324	Missense_Mutation	DNP	CC	TCGA-50-5049-01A-01D-1625-08	2023	46898324	88108192	984	130471											
LRP4	4038	broad.mit.edu	37	chr11	46920180	46920180	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagcctgcattgatgcacAggccactgtcacacatgaac	9	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46920180	G	G	46920180	3	3	151	1	0	0	0	0	1	0	0	0	9046	188	7	5	5120	5	LRP4	11	46920180	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	21856	46920180	88086336	985	130472											
C1QTNF4	114900	broad.mit.edu	37	chr11	47611633	47611633	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcttcatcagcttaaccgAcagcgtcttacgcggcagct	9	13	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47611633	T	T	47611633	3	4	151	1	0	0	0	0	1	0	0	0	1985	275	10	5	263	5	C1QTNF4	11	47611633	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	691453	47611633	87394883	986	130473											
AGBL2	79841	broad.mit.edu	37	chr11	47689131	47689131	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtctttcttactgaggtatCttctgttaactttaacttct	5	8	5	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47689131	A	A	47689131	3	1	151	1	0	0	0	0	1	0	0	0	376	913	32	3	392	3	AGBL2	11	47689131	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	77498	47689131	87317385	987	130474											
OR4C16	219428	broad.mit.edu	37	chr11	55340095	55340095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttcttgccctgagtttGccattctgtggccccaatgt	8	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55340095	T	T	55340095	3	4	151	1	0	0	0	0	1	0	0	0	11143	1310	46	3	494	3	OR4C16	11	55340095	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	7650964	55340095	79666421	988	130475											
OR5D14	219436	broad.mit.edu	37	chr11	55563451	55563451	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatacagtggccatgtcacaGaggctctgtgccctgctggt	12	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563451	T	T	55563451	3	4	151	1	0	0	0	0	1	0	0	0	11249	933	33	3	422	3	OR5D14	11	55563451	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	223356	55563451	79443065	989	130476											
OR5D18	219438	broad.mit.edu	37	chr11	55587887	55587887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatcctcttcctttactGtgtgcccaactccaaaaact	3	16	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587887	T	T	55587887	3	4	151	1	0	0	0	0	1	0	0	0	11251	1377	48	3	784	3	OR5D18	11	55587887	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	24436	55587887	79418629	990	130477											
OR5L2	26338	broad.mit.edu	37	chr11	55595294	55595294	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaatgagacactgctgttCctggtggccactttgaatga	12	8	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595294	A	A	55595294	3	1	151	1	0	0	0	0	1	0	0	0	11265	854	30	3	602	3	OR5L2	11	55595294	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7407	55595294	79411222	991	130478											
OR5F1	338674	broad.mit.edu	37	chr11	55761380	55761380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgtcaggtgagaggcaCacgtggagaaagctctgtgc	16	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55761380	A	A	55761380	3	1	151	1	0	0	0	0	1	0	0	0	11252	478	17	3	225	3	OR5F1	11	55761380	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	166086	55761380	79245136	992	130479											
OR8J3	81168	broad.mit.edu	37	chr11	55904510	55904510	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttccttccttctggtgaacGtatccttagaatggacaaaa	7	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55904510	C	C	55904510	3	2	151	1	0	0	0	0	1	0	0	0	11336	1145	40	4	264	4	OR8J3	11	55904510	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	143130	55904510	79102006	993	130480											
OR8K5	219453	broad.mit.edu	37	chr11	55927529	55927529	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataataggaaatagtatttcGatccacaacaaaatttgcca	5	7	0	0	rs147577134		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55927529	T	T	55927529	2	4	151	1	0	0	0	0	0	0	0	1	11339	1066	37	3		3	OR8K5	11	55927529	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	23019	55927529	79078987	994	130481											
OR5T3	390154	broad.mit.edu	37	chr11	56020511	56020511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcacctaactggagtgaCaatttatcatggaacaattc	6	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020511	A	A	56020511	3	1	151	1	0	0	0	0	1	0	0	0	11277	478	17	3	838	3	OR5T3	11	56020511	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	92982	56020511	78986005	995	130482											
OR5T1	390155	broad.mit.edu	37	chr11	56043109	56043109	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagtacatataaacaataGctaaaatgtcagggttgcct	7	6	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56043109	T	T	56043109	1	4	151	0	1	0	0	0	0	0	0	0	11275	986	34	3		3	OR5T1	11	56043109	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	22598	56043109	78963407	996	130483											
OR5M8	219484	broad.mit.edu	37	chr11	56258857	56258857	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctcataatttccttcGgtggaagaaaggaactttac	7	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56258857	T	T	56258857	1	4	151	0	1	0	0	0	0	0	0	0	11270	1131	39	1		1	OR5M8	11	56258857	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	215748	56258857	78747659	997	130484											
SSRP1	6749	broad.mit.edu	37	chr11	57095662	57095662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctataaaaaacagcccCaaggaagaacaggtcctact	8	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57095662	A	A	57095662	1	1	151	0	1	0	0	0	0	0	0	0	15312	609	21	2		2	SSRP1	11	57095662	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	836805	57095662	77910854	998	130485											
OR6Q1	219952	broad.mit.edu	37	chr11	57799343	57799343	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtgaagggagctctgggtCgagtcttttctctcaacttt	11	8	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57799343	T	T	57799343	4	4	151	1	0	0	0	0	0	1	0	0	11302	876	31	4	921	4	OR6Q1	11	57799343	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	703681	57799343	77207173	999	130486											
OR5B12	390191	broad.mit.edu	37	chr11	58207590	58207590	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatcagttaaccccacaAggatgaattcagtcacctct	7	12	5	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207590	T	T	58207590	3	4	151	1	0	0	0	0	1	0	0	0	11242	72	3	5	913	5	OR5B12	11	58207590	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	408247	58207590	76798926	1000	130487											
GLYATL2	219970	broad.mit.edu	37	chr11	58604651	58604651	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaagccctcttggcaacCtggagaaaggagaaagacaa	10	10	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58604651	A	A	58604651	5	1	151	1	0	0	0	0	0	0	1	0	6545	695	24	2	579	2	GLYATL2	11	58604651	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	397061	58604651	76401865	1001	130488											
OR5A2	219981	broad.mit.edu	37	chr11	59189613	59189613	+	Frame_Shift_Del	DEL	C	-	-													gaatatggacaccaccttgtCcctgtttagggagtagctgg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59189613	-	-	59189613	7	5	151	1	0	1	0	1	0	0	0	0	11234	855	30	0	162	0	OR5A2	11	59189613	Frame_Shift_Del	DEL	C	TCGA-50-5049-01A-01D-1625-08	584962	59189613	75816903	1002	130489											
OR4D6	219983	broad.mit.edu	37	chr11	59225169	59225169	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcacgtcccacatgctgGtggtgactcttcacttcgtg	11	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59225169	C	C	59225169	3	2	151	1	0	0	0	0	1	0	0	0	11152	1261	44	4	738	4	OR4D6	11	59225169	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	35556	59225169	75781347	1003	130490											
OR4D11	219986	broad.mit.edu	37	chr11	59271283	59271283	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttctcctccacaactgctCctaaagtcttgctggacctt	6	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59271283	T	T	59271283	3	4	151	1	0	0	0	0	1	0	0	0	11149	855	30	4	237	4	OR4D11	11	59271283	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	46114	59271283	75735233	1004	130491											
GIF	2694	broad.mit.edu	37	chr11	59608578	59608578	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcaatccaggcttattGgcaggaacccaaccaagagc	9	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59608578	T	T	59608578	1	4	151	0	1	0	0	0	0	0	0	0	6440	1363	47	2		2	GIF	11	59608578	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	337295	59608578	75397938	1005	130492											
TCN1	6947	broad.mit.edu	37	chr11	59622151	59622151	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtatcattcattttctgGgctttctccatcacactgag	6	10	5	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59622151	T	T	59622151	2	4	151	1	0	0	0	0	0	0	0	1	15828	1219	43	2		2	TCN1	11	59622151	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	13573	59622151	75384365	1006	130493											
MS4A7	58475	broad.mit.edu	37	chr11	60157028	60157028	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggagtactattatccaataTatgaaatcaaagattgtctc	6	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60157028	C	C	60157028	3	2	151	1	0	0	0	0	1	0	0	0	9960	1406	49	5	519	5	MS4A7	11	60157028	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	534877	60157028	74849488	1007	130494											
C11orf9	745	broad.mit.edu	37	chr11	61539345	61539345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtggctcctacctggacCccaactaccagtccatcaag	7	16	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61539345	A	A	61539345	3	1	151	1	0	0	0	0	1	0	0	0	1683	623	22	2	1085	2	C11orf9	11	61539345	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1382317	61539345	73467171	1008	130495											
POLR2G	5436	broad.mit.edu	37	chr11	62532641	62532641	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacggccgtaagatcactcAttttttttctaggttggact	9	9	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62532641	T	T	62532641	1	4	151	0	1	0	0	0	0	0	0	0	12315	232	8	5		5	POLR2G	11	62532641	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	993296	62532641	72473875	1009	130496											
SLC22A25	387601	broad.mit.edu	37	chr11	62931450	62931450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactccatagatgatccagGgcaggggtcgagaatatatg	13	7	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62931450	T	T	62931450	3	4	151	1	0	0	0	0	1	0	0	0	14568	1232	43	2	157	2	SLC22A25	11	62931450	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	398809	62931450	72075066	1010	130497											
SLC22A9	114571	broad.mit.edu	37	chr11	63143248	63143248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaaccctggaggtgagctGgatgggagctagatatggga	16	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63143248	T	T	63143248	1	4	151	0	1	0	0	0	0	0	0	0	14575	1363	47	2		2	SLC22A9	11	63143248	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	211798	63143248	71863268	1011	130498											
PLCB3	5331	broad.mit.edu	37	chr11	64023045	64023045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctcagcagacaagaagcGggtggagactgcgctggaat	15	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64023045	T	T	64023045	3	4	151	1	0	0	0	0	1	0	0	0	12124	1116	39	1	580	1	PLCB3	11	64023045	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	879797	64023045	70983471	1012	130499											
SNX15	29907	broad.mit.edu	37	chr11	64795011	64795011	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccgctccagctcggtttcaTgtcccgccaggcgaaggatg	12	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64795011	C	C	64795011	3	2	151	1	0	0	0	0	1	0	0	0	15000	1464	51	5	4	5	SNX15	11	64795011	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	771966	64795011	70211505	1013	130500											
SPTBN2	6712	broad.mit.edu	37	chr11	66455621	66455621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagccgcctcctcctaccCaggcatcctggctctcaccc	6	22	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66455621	A	A	66455621	1	1	151	0	1	0	0	0	0	0	0	0	15238	609	21	2		2	SPTBN2	11	66455621	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1660610	66455621	68550895	1014	130501											
SYT12	91683	broad.mit.edu	37	chr11	66811388	66811388	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacatacacttccaggaaggGactccatcatcctcatcatc	5	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66811388	T	T	66811388	1	4	151	0	1	0	0	0	0	0	0	0	15587	1189	41	3		3	SYT12	11	66811388	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	355767	66811388	68195128	1015	130502											
PPP1CA	5499	broad.mit.edu	37	chr11	67168700	67168700	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatggggtgtcaggaccctgGaccctgacaggaggagggtg	18	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67168700	T	T	67168700	1	4	151	0	1	0	0	0	0	0	0	0	12450	1174	41	3		3	PPP1CA	11	67168700	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	357312	67168700	67837816	1016	130503											
CABP2	51475	broad.mit.edu	37	chr11	67288472	67288472	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcatctggaggactggggaTggggatgggtccgaggcaca	20	7	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67288472	A	A	67288472	1	1	151	0	1	0	0	0	0	0	0	0	2558	1479	51	5		5	CABP2	11	67288472	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	119772	67288472	67718044	1017	130504											
LRP5	4041	broad.mit.edu	37	chr11	68204296	68204296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaccttggttgctgtgcCctgcatggtgggctgggggg	18	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68204296	T	T	68204296	1	4	151	0	1	0	0	0	0	0	0	0	9047	638	22	4		4	LRP5	11	68204296	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	915824	68204296	66802220	1018	130505											
CPT1A	1374	broad.mit.edu	37	chr11	68540772	68540772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggccagctgcacaaaggcGtctgggctcgtgcgacattt	14	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68540772	T	T	68540772	3	4	151	1	0	0	0	0	1	0	0	0	3863	1136	40	3	684	3	CPT1A	11	68540772	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	336476	68540772	66465744	1019	130506											
PPFIA1	8500	broad.mit.edu	37	chr11	70171046	70171046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgcagtctccagcaggcGtgtccagcgaagtggaagtg	15	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70171046	T	T	70171046	3	4	151	1	0	0	0	0	1	0	0	0	12405	1145	40	3	470	3	PPFIA1	11	70171046	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1630274	70171046	64835470	1020	130507											
CTTN	2017	broad.mit.edu	37	chr11	70261870	70261870	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgctccgggggccccgatGgggagagtcacagccacctg	15	16	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70261870	A	A	70261870	1	1	151	0	1	0	0	0	0	0	0	0	4078	1363	47	4		4	CTTN	11	70261870	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	90824	70261870	64744646	1021	130508											
ARHGEF17	9828	broad.mit.edu	37	chr11	73071467	73071467	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttcccgccaaccaagctgGagctgtgcgccactcggccc	10	19	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73071467	T	T	73071467	4	4	151	1	0	0	0	0	0	1	0	0	902	1175	41	3	4351	3	ARHGEF17	11	73071467	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2809597	73071467	61935049	1022	130509											
RSF1	51773	broad.mit.edu	37	chr11	77402170	77402170	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gacaattctgctctcatattCccaaacaaaacattaacaca	2	12	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77402170	G	G	77402170	1	3	151	0	1	0	0	0	0	0	0	0	13810	870	30	4		4	RSF1	11	77402170	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	4330703	77402170	57604346	1023	130510											
PCF11	51585	broad.mit.edu	37	chr11	82882867	82882867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttcttaaaggttctgaGtggtgttgctcagccagtag	12	6	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82882867	T	T	82882867	3	4	151	1	0	0	0	0	1	0	0	0	11667	1029	36	3	3702	3	PCF11	11	82882867	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	5480697	82882867	52123649	1024	130511											
FZD4	8322	broad.mit.edu	37	chr11	86663317	86663317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcttcatcacctggccCttccatgcacatgtggttgt	7	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86663317	A	A	86663317	3	1	151	1	0	0	0	0	1	0	0	0	6192	681	24	2	1136	2	FZD4	11	86663317	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3780450	86663317	48343199	1025	130512											
FAT3	120114	broad.mit.edu	37	chr11	92616229	92616229	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccgccgccctgcttaacAagagcaatggcatcccgttc	8	17	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92616229	T	T	92616229	4	4	151	1	0	0	0	0	0	1	0	0	5748	131	5	5	12697	5	FAT3	11	92616229	Nonsense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	5952912	92616229	42390287	1026	130513											
KDM4DL	390245	broad.mit.edu	37	chr11	94759419	94759419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttcccagacatttctcGgggctgtgaggccttcctgc	11	14	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94759419	T	T	94759419	3	4	151	1	0	0	0	0	1	0	0	0	8202	1116	39	1	700	1	KDM4DL	11	94759419	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2143190	94759419	40247097	1027	130514											
YAP1	10413	broad.mit.edu	37	chr11	102033253	102033253	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcccagatgaacgtcacAgcccccaccagtccaccagt	7	18	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102033253	T	T	102033253	2	4	151	1	0	0	0	0	0	0	0	1	17593	175	7	5		5	YAP1	11	102033253	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	7273834	102033253	32973263	1028	130515											
MMP7	4316	broad.mit.edu	37	chr11	102394117	102394117	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagttcatgagttgcagcaTacaggaagttaatccctaca	8	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102394117	C	C	102394117	3	2	151	1	0	0	0	0	1	0	0	0	9761	1406	49	5	182	5	MMP7	11	102394117	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	360864	102394117	32612399	1029	130516											
MMP20	9313	broad.mit.edu	37	chr11	102487840	102487840	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagcgtagtctgggaaataCtcatgctcaggtaaggcagg	13	8	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102487840	G	G	102487840	1	3	151	0	1	0	0	0	0	0	0	0	9752	580	20	4		4	MMP20	11	102487840	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	93723	102487840	32518676	1030	130517											
MMP10	4319	broad.mit.edu	37	chr11	102649462	102649462	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgtcctgggccatcaaaaGagtaaaagtctccatgttct	9	9	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102649462	A	A	102649462	3	1	151	1	0	0	0	0	1	0	0	0	9742	942	33	4	943	4	MMP10	11	102649462	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	161622	102649462	32357054	1031	130518											
DYNC2H1	79659	broad.mit.edu	37	chr11	103029634	103029634	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattttttgtttctatttttAttaggaaaaacgctcagcat	5	5	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103029634	G	G	103029634	1	3	151	0	1	0	0	0	0	0	0	0	4886	464	16	5		5	DYNC2H1	11	103029634	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	380172	103029634	31976882	1032	130519											
CASP1	834	broad.mit.edu	37	chr11	104972101	104972101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccacaactttttcctccCaggggcctgtttttgggaca	8	13	0	0	rs77208579	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104972101	A	A	104972101	1	1	151	0	1	0	0	0	0	0	0	0	2694	609	21	2		2	CASP1	11	104972101	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1942467	104972101	30034415	1033	130520											
CASP1	834	broad.mit.edu	37	chr11	104972245	104972245	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagggcatgtacacatattGggaaaccactgcacatgcat	10	10	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104972245	A	A	104972245	1	1	151	0	1	0	0	0	0	0	0	0	2694	1363	47	4		4	CASP1	11	104972245	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	144	104972245	30034271	1034	130521											
ATM	472	broad.mit.edu	37	chr11	108218052	108218052	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacatgtacagaatatcttGataaatgagcagtcagcaga	9	6	2	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108218052	A	A	108218052	2	1	151	1	0	0	0	0	0	0	0	1	1113	1281	45	4		4	ATM	11	108218052	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3245807	108218052	26788464	1035	130522											
EXPH5	23086	broad.mit.edu	37	chr11	108384381	108384381	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgctagagtctgagcaattCcaaatgaggaagcttctttg	10	7	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108384381	G	G	108384381	3	3	151	1	0	0	0	0	1	0	0	0	5365	855	30	4	4120	4	EXPH5	11	108384381	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	166329	108384381	26622135	1036	130523											
DDX10	1662	broad.mit.edu	37	chr11	108564339	108564339	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgccaggtaggtgtactGactaatttcttttcttttgc	8	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108564339	T	T	108564339	1	4	151	0	1	0	0	0	0	0	0	0	4375	1305	45	3		3	DDX10	11	108564339	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	179958	108564339	26442177	1037	130524											
POU2AF1	5450	broad.mit.edu	37	chr11	111249803	111249803	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccccatcacctccaccaccAgctccccaattccagaccaa	3	22	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111249803	T	T	111249803	1	4	151	0	1	0	0	0	0	0	0	0	12366	203	7	5		5	POU2AF1	11	111249803	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	2685464	111249803	23756713	1038	130525											
NCAM1	4684	broad.mit.edu	37	chr11	113102911	113102911	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgccccaaagctacagggCcctgtggctgtgtacacttg	12	12	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113102911	A	A	113102911	2	1	151	1	0	0	0	0	0	0	0	1	10297	726	26	3		3	NCAM1	11	113102911	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1853108	113102911	21903605	1039	130526											
DRD2	1813	broad.mit.edu	37	chr11	113285099	113285099	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggcctgagcacttaccaCtctccgcctgttcactggga	9	16	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113285099	G	G	113285099	3	3	151	1	0	0	0	0	1	0	0	0	4797	565	20	4	535	4	DRD2	11	113285099	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	182188	113285099	21721417	1040	130527											
CADM1	23705	broad.mit.edu	37	chr11	115085438	115085438	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattgatgaacaggttgggcCcagacagtacggcgtgttga	14	7	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115085438	T	T	115085438	3	4	151	1	0	0	0	0	1	0	0	0	2592	623	22	4	460	4	CADM1	11	115085438	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1800339	115085438	19921078	1041	130528											
CEP164	22897	broad.mit.edu	37	chr11	117265563	117265563	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggtgtggcatggtgggttCtggaaccccctcctgcccct	14	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117265563	T	T	117265563	1	4	151	0	1	0	0	0	0	0	0	0	3279	928	32	4		4	CEP164	11	117265563	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2180125	117265563	17740953	1042	130529											
CEP164	22897	broad.mit.edu	37	chr11	117280506	117280506	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctccctccccgggaccctaaGagcacccccacccccaccta	5	24	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117280506	C	C	117280506	3	2	151	1	0	0	0	0	1	0	0	0	3279	933	33	4	4031	4	CEP164	11	117280506	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	14943	117280506	17726010	1043	130530											
ATP5L	10632	broad.mit.edu	37	chr11	118279714	118279714	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtatgcttcttttttcaGgaagctgtgctgaatggttt	10	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118279714	A	A	118279714	5	1	151	1	0	0	0	0	0	0	1	0	1164	1014	35	4	223	4	ATP5L	11	118279714	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	999208	118279714	16726802	1044	130531											
ABCG4	64137	broad.mit.edu	37	chr11	119029459	119029459	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgagctgccctgggcatGgggcaagggtgtgggtgctg	20	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119029459	A	A	119029459	1	1	151	0	1	0	0	0	0	0	0	0	70	1363	47	4		4	ABCG4	11	119029459	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	749745	119029459	15977057	1045	130532											
GRIK4	2900	broad.mit.edu	37	chr11	120531062	120531062	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcctttggtgctgcttcCtgcgtggctcgtgatggtcg	16	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120531062	T	T	120531062	3	4	151	1	0	0	0	0	1	0	0	0	6842	681	24	4	37	4	GRIK4	11	120531062	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1501603	120531062	14475454	1046	130533											
SORL1	6653	broad.mit.edu	37	chr11	121429299	121429299	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtccccattttcgctaGggtgatgttctggacagact	10	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121429299	T	T	121429299	5	4	151	1	0	0	0	0	0	0	1	0	15048	1014	35	2	2741	2	SORL1	11	121429299	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	898237	121429299	13577217	1047	130534											
ASAM	79827	broad.mit.edu	37	chr11	122954456	122954456	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggattcgctgccagtaatacAcaatgggctctgtgccagag	12	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122954456	G	G	122954456	3	3	151	1	0	0	0	0	1	0	0	0	1013	159	6	5	649	5	ASAM	11	122954456	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1525157	122954456	12052060	1048	130535											
OR6X1	390260	broad.mit.edu	37	chr11	123624810	123624810	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcagggccagctgcagGcagagtttgctggtcatgat	15	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123624810	T	T	123624810	4	4	151	1	0	0	0	0	0	1	0	0	11306	1195	42	3	523	3	OR6X1	11	123624810	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	670354	123624810	11381706	1049	130536											
ESAM	90952	broad.mit.edu	37	chr11	124624446	124624446	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctccgtgccctgctacagAgacaggcctcagcagacagg	12	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124624446	C	C	124624446	1	2	151	0	1	0	0	0	0	0	0	0	5289	319	11	5		5	ESAM	11	124624446	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	999636	124624446	10382070	1050	130537											
ROBO3	64221	broad.mit.edu	37	chr11	124749648	124749648	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagattagtgacaggagtgGcaggaggctccgctgaaaac	14	7	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124749648	C	C	124749648	1	2	151	0	1	0	0	0	0	0	0	0	13626	1218	42	4		4	ROBO3	11	124749648	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	125202	124749648	10256868	1051	130538											
FEZ1	9638	broad.mit.edu	37	chr11	125318510	125318510	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagataccatctggtcagaGgttcacttctagggccacat	9	10	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125318510	A	A	125318510	1	1	151	0	1	0	0	0	0	0	0	0	5880	1015	35	4		4	FEZ1	11	125318510	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	568862	125318510	9688006	1052	130539											
KIRREL3	84623	broad.mit.edu	37	chr11	126319004	126319004	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagtccactgtggtcctGtacacctctccagatgcctc	9	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126319004	T	T	126319004	4	4	151	1	0	0	0	0	0	1	0	0	8397	1372	48	3	1586	3	KIRREL3	11	126319004	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1000494	126319004	8687512	1053	130540											
ETS1	2113	broad.mit.edu	37	chr11	128356001	128356001	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatagcgggattctggataGgctgggttgactccattaac	13	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128356001	C	C	128356001	2	2	151	1	0	0	0	0	0	0	0	1	5317	987	35	4		4	ETS1	11	128356001	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	2036997	128356001	6650515	1054	130541											
ETS1	2113	broad.mit.edu	37	chr11	128426158	128426158	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtccttcaactctatcctCattcccagcttttgtttatg	4	12	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128426158	G	G	128426158	1	3	151	0	1	0	0	0	0	0	0	0	5317	841	29	4		4	ETS1	11	128426158	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	70157	128426158	6580358	1055	130542											
ADAMTS15	170689	broad.mit.edu	37	chr11	130340918	130340918	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgggtgcccaagtactcCggcgtgtctccccgggacaa	13	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130340918	T	T	130340918	2	4	151	1	0	0	0	0	0	0	0	1	260	639	23	4		4	ADAMTS15	11	130340918	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1914760	130340918	4665598	1056	130543											
ADAMTS15	170689	broad.mit.edu	37	chr11	130342836	130342836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgcttttactcccatgCcagaattcaccgaaagctag	7	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130342836	A	A	130342836	1	1	151	0	1	0	0	0	0	0	0	0	260	754	26	3		3	ADAMTS15	11	130342836	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1918	130342836	4663680	1057	130544											
NCAPD3	23310	broad.mit.edu	37	chr11	134022725	134022725	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagctctcgtgttccaCagcaaagcgctgcccaagga	13	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134022725	A	A	134022725	1	1	151	0	1	0	0	0	0	0	0	0	10301	493	17	3		3	NCAPD3	11	134022725	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	3679889	134022725	983791	1058	130545											
IQSEC3	440073	broad.mit.edu	37	chr12	274680	274680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctgctgggcatgcagttCcagctctttgagaacgagtg	14	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	274680	A	A	274680	3	1	151	1	0	0	0	0	1	0	0	0	7889	854	30	3	2828	3	IQSEC3	12	274680	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08		274680	133577215	1059	130546											
CACNA2D4	93589	broad.mit.edu	37	chr12	2022194	2022194	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggcctggagtacctggaCcgcctcgactttcctccgca	10	16	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2022194	T	T	2022194	3	4	151	1	0	0	0	0	1	0	0	0	2577	507	18	4	3136	4	CACNA2D4	12	2022194	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1747514	2022194	131829701	1060	130547											
CACNA1C	775	broad.mit.edu	37	chr12	2795394	2795394	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaccgagggggagacatcTctcagaagacagtcctgccc	13	12	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2795394	A	A	2795394	3	1	151	1	0	0	0	0	1	0	0	0	2566	1551	54	5	6630	5	CACNA1C	12	2795394	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	773200	2795394	131056501	1061	130548											
KCNA6	3742	broad.mit.edu	37	chr12	4920840	4920840	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggggagcactgagctaacAgtctcttaggcttccttctc	11	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4920840	T	T	4920840	1	4	151	0	1	0	0	0	0	0	0	0	8077	203	7	5		5	KCNA6	12	4920840	3'UTR	SNP	A	TCGA-50-5049-01A-01D-1625-08	2125446	4920840	128931055	1062	130549											
CD163	9332	broad.mit.edu	37	chr12	7639141	7639141	+	Frame_Shift_Del	DEL	C	-	-													ttgtgcctgcaattttgctgCccccagccgtgtgaatggca							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7639141	-	-	7639141	7	5	151	1	0	1	0	1	0	0	0	0	2997	726	26	0	1086	0	CD163	12	7639141	Frame_Shift_Del	DEL	C	TCGA-50-5049-01A-01D-1625-08	2718301	7639141	126212754	1063	130550											
A2M	2	broad.mit.edu	37	chr12	9225139	9225139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccagaattcctgtccaCgtccctaaccctttctctga	4	16	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9225139	A	A	9225139	1	1	151	0	1	0	0	0	0	0	0	0	4	551	19	3		3	A2M	12	9225139	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1585998	9225139	124626756	1064	130551											
LRP6	4040	broad.mit.edu	37	chr12	12334236	12334236	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcagtccagtagatgtagcCttccacaggatcgtaatcta	8	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12334236	T	T	12334236	3	4	151	1	0	0	0	0	1	0	0	0	9049	681	24	4	3799	4	LRP6	12	12334236	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3109097	12334236	121517659	1065	130552											
PLCZ1	89869	broad.mit.edu	37	chr12	18865880	18865880	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcattttgtgctccatcccAgcagtcaatctccaaacaac	4	14	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18865880	T	T	18865880	3	4	151	1	0	0	0	0	1	0	0	0	12139	188	7	5	1256	5	PLCZ1	12	18865880	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	6531644	18865880	114986015	1066	130553											
PDE3A	5139	broad.mit.edu	37	chr12	20766475	20766475	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcttccaccaaacgtGtgcacatccttgagagccgt	7	15	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20766475	T	T	20766475	2	4	151	1	0	0	0	0	0	0	0	1	11731	1364	48	3		3	PDE3A	12	20766475	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1900595	20766475	113085420	1067	130554											
SLCO1B1	10599	broad.mit.edu	37	chr12	21392216	21392216	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaggagttcctggtcctttCactaagaatttccacatctt	7	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21392216	A	A	21392216	1	1	151	0	1	0	0	0	0	0	0	0	14837	841	29	3		3	SLCO1B1	12	21392216	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	625741	21392216	112459679	1068	130555											
ABCC9	10060	broad.mit.edu	37	chr12	22086820	22086820	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaatgaagccatgtgttGtggtgaatttgtacttttga	12	3	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22086820	T	T	22086820	3	4	151	1	0	0	0	0	1	0	0	0	59	1368	48	3	4759	3	ABCC9	12	22086820	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	694604	22086820	111765075	1069	130556											
TMTC1	83857	broad.mit.edu	37	chr12	29669431	29669431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctgagcctacaaaaccaCatggaccttggcttagcaga	8	12	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29669431	A	A	29669431	1	1	151	0	1	0	0	0	0	0	0	0	16383	493	17	3		3	TMTC1	12	29669431	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	7582611	29669431	104182464	1070	130557											
LRRK2	120892	broad.mit.edu	37	chr12	40714814	40714814	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttttgtgaggctgtataacCatagtgtccttttgccttta	9	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40714814	T	T	40714814	1	4	151	0	1	0	0	0	0	0	0	0	9120	609	21	4		4	LRRK2	12	40714814	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	11045383	40714814	93137081	1071	130558											
PRICKLE1	144165	broad.mit.edu	37	chr12	42866307	42866307	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctcatcttgggctccatCtccaaaggcataaagtttaa	7	10	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42866307	T	T	42866307	2	4	151	1	0	0	0	0	0	0	0	1	12592	912	32	4		4	PRICKLE1	12	42866307	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2151493	42866307	90985588	1072	130559											
RAPGEF3	10411	broad.mit.edu	37	chr12	48143136	48143136	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccacatcacttctctggacGaatggcccctgccctcccca	6	19	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48143136	C	C	48143136	1	2	151	0	1	0	0	0	0	0	0	0	13153	1073	37	4		4	RAPGEF3	12	48143136	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	5276829	48143136	85708759	1073	130560											
CELA1	1990	broad.mit.edu	37	chr12	51736338	51736339	+	Intron	DNP	CC	AG	AG													cctcaccgcccagcccagggCcagcttggacttgctcctac							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	51736339	AG	AG	51736338	1	1	151	0	1	0	0	0	0	0	0	0	3240	754	26	3		3	CELA1	12	51736338	Intron	DNP	CC	TCGA-50-5049-01A-01D-1625-08	3593202	51736338	82115557	1074	130561											
ACVR1B	91	broad.mit.edu	37	chr12	52380697	52380697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccctcgggcttgtatattGggagattgctcgaagatgca	13	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52380697	T	T	52380697	3	4	151	1	0	0	0	0	1	0	0	0	221	1357	47	2	1385	2	ACVR1B	12	52380697	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	644359	52380697	81471198	1075	130562											
KRT6B	3854	broad.mit.edu	37	chr12	52843198	52843198	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaagtctgcagtcctcTggtattcagggatggacaca	12	9	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52843198	A	A	52843198	1	1	151	0	1	0	0	0	0	0	0	0	8552	1595	55	5		5	KRT6B	12	52843198	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	462501	52843198	81008697	1076	130563											
KRT73	319101	broad.mit.edu	37	chr12	53012247	53012247	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccccctgagagcacagcgGagcagccgctgaagcccccc	12	18	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53012247	C	C	53012247	3	2	151	1	0	0	0	0	1	0	0	0	8557	1174	41	4	1596	4	KRT73	12	53012247	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	169049	53012247	80839648	1077	130564											
KRT76	51350	broad.mit.edu	37	chr12	53162448	53162448	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagagagtgggaaacactaTtgcaggctgagtgggaagca	16	6	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53162448	C	C	53162448	1	2	151	0	1	0	0	0	0	0	0	0	8560	1508	52	5		5	KRT76	12	53162448	3'UTR	SNP	T	TCGA-50-5049-01A-01D-1625-08	150201	53162448	80689447	1078	130565											
KRT18	3875	broad.mit.edu	37	chr12	53344262	53344262	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggatctgctccccaggctgGgtcagttaggggctcacagt	14	11	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53344262	C	C	53344262	1	2	151	0	1	0	0	0	0	0	0	0	8526	1247	43	4		4	KRT18	12	53344262	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	181814	53344262	80507633	1079	130566											
SOAT2	8435	broad.mit.edu	37	chr12	53514557	53514557	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgacctgcagcctcttgtCcccaaccaccaggcatcttc	6	19	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53514557	A	A	53514557	1	1	151	0	1	0	0	0	0	0	0	0	15025	870	30	3		3	SOAT2	12	53514557	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	170295	53514557	80337338	1080	130567											
OR9K2	441639	broad.mit.edu	37	chr12	55524048	55524048	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaatgtccacacgtctgTgtactcagttggtggctggt	11	9	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55524048	C	C	55524048	3	2	151	1	0	0	0	0	1	0	0	0	11348	1696	59	5	498	5	OR9K2	12	55524048	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	2009491	55524048	78327847	1081	130568											
MMP19	4327	broad.mit.edu	37	chr12	56234451	56234451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgagaactgttgcctacCaggcccatcaaaagtattgg	9	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56234451	A	A	56234451	3	1	151	1	0	0	0	0	1	0	0	0	9750	608	21	2	1030	2	MMP19	12	56234451	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	710403	56234451	77617444	1082	130569											
MMP19	4327	broad.mit.edu	37	chr12	56234583	56234583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtcctggaaggcttgacGcagggctgcccgggctgtgt	16	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56234583	T	T	56234583	3	4	151	1	0	0	0	0	1	0	0	0	9750	1087	38	3	1162	3	MMP19	12	56234583	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	132	56234583	77617312	1083	130570											
DGKA	1606	broad.mit.edu	37	chr12	56330338	56330338	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgattttgcccagctgcaAaaatacatggaatgtgagtc	10	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56330338	G	G	56330338	2	3	151	1	0	0	0	0	0	0	0	1	4505	11	1	5		5	DGKA	12	56330338	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	95755	56330338	77521557	1084	130571											
DGKA	1606	broad.mit.edu	37	chr12	56331168	56331168	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccttgcagactccccaGgataatgctcactctcatta	6	14	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56331168	A	A	56331168	1	1	151	0	1	0	0	0	0	0	0	0	4505	1015	35	4		4	DGKA	12	56331168	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	830	56331168	77520727	1085	130572											
DGKA	1606	broad.mit.edu	37	chr12	56332805	56332805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccttcatgtcccttcttGtaccttcttccctggtgagt	6	14	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56332805	T	T	56332805	1	4	151	0	1	0	0	0	0	0	0	0	4505	1392	48	3		3	DGKA	12	56332805	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1637	56332805	77519090	1086	130573											
LRP1	4035	broad.mit.edu	37	chr12	57548038	57548038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaggcaacttctactttGtggatgacatcgatgatagg	11	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57548038	T	T	57548038	3	4	151	1	0	0	0	0	1	0	0	0	9038	1377	48	3	915	3	LRP1	12	57548038	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1215233	57548038	76303857	1087	130574											
LRP1	4035	broad.mit.edu	37	chr12	57573723	57573723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagccccatggccttgtcGtccaccctctgcgtgggtca	11	16	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57573723	T	T	57573723	3	4	151	1	0	0	0	0	1	0	0	0	9038	1145	40	3	5243	3	LRP1	12	57573723	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	25685	57573723	76278172	1088	130575											
KIF5A	3798	broad.mit.edu	37	chr12	57962874	57962874	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatccttaggtcccctcAcccctcaagccacaccccat	5	19	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57962874	C	C	57962874	1	2	151	0	1	0	0	0	0	0	0	0	8375	174	6	5		5	KIF5A	12	57962874	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	389151	57962874	75889021	1089	130576											
KIF5A	3798	broad.mit.edu	37	chr12	57975705	57975705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttctggcggccccttgGcttcctaccagaaggccaac	9	16	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57975705	T	T	57975705	3	4	151	1	0	0	0	0	1	0	0	0	8375	1203	42	3	3064	3	KIF5A	12	57975705	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	12831	57975705	75876190	1090	130577											
GRIP1	23426	broad.mit.edu	37	chr12	66859187	66859187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgactagtagtggcccggatGctgttgccacagagtctgtc	13	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66859187	T	T	66859187	3	4	151	1	0	0	0	0	1	0	0	0	6853	1319	46	3	2558	3	GRIP1	12	66859187	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	8883482	66859187	66992708	1091	130578											
TPH2	121278	broad.mit.edu	37	chr12	72355438	72355438	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgttgagcgtgcacatattGatggatgttagatccattgt	11	5	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72355438	A	A	72355438	1	1	151	0	1	0	0	0	0	0	0	0	16526	1305	45	4		4	TPH2	12	72355438	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	5496251	72355438	61496457	1092	130579											
TRHDE	29953	broad.mit.edu	37	chr12	72956872	72956872	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttttattcttacatttgtAggtttaatatttcaaagagc	6	4	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72956872	T	T	72956872	1	4	151	0	1	0	0	0	0	0	0	0	16603	435	15	5		5	TRHDE	12	72956872	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	601434	72956872	60895023	1093	130580											
CAPS2	84698	broad.mit.edu	37	chr12	75699617	75699617	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatattcaggctcaccagcCtcatcctcgcccaggtgttc	8	16	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75699617	G	G	75699617	1	3	151	0	1	0	0	0	0	0	0	0	2664	696	24	4		4	CAPS2	12	75699617	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2742745	75699617	58152278	1094	130581											
OSBPL8	114882	broad.mit.edu	37	chr12	76784400	76784400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcagaatacatatcttggtCcttaaaatgttgtcgttcaa	6	7	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76784400	A	A	76784400	3	1	151	1	0	0	0	0	1	0	0	0	11377	855	30	3	1758	3	OSBPL8	12	76784400	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1084783	76784400	57067495	1095	130582											
NAV3	89795	broad.mit.edu	37	chr12	78400781	78400781	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccagtcaaagaagagaAggatcaggtgacagagatgg	13	5	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78400781	T	T	78400781	3	4	151	1	0	0	0	0	1	0	0	0	10279	72	3	5	1493	5	NAV3	12	78400781	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1616381	78400781	55451114	1096	130583											
LRRIQ1	84125	broad.mit.edu	37	chr12	85449967	85449967	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcaatacaagtaaagttaAaagaatctatatcaagccaa	4	6	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85449967	T	T	85449967	4	4	151	1	0	0	0	0	0	1	0	0	9116	15	1	5	1422	5	LRRIQ1	12	85449967	Nonsense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	7049186	85449967	48401928	1097	130584											
CCDC41	51134	broad.mit.edu	37	chr12	94818600	94818600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctcagctggtcatttcCattgcttccactactgctgt	7	12	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94818600	A	A	94818600	1	1	151	0	1	0	0	0	0	0	0	0	2840	609	21	2		2	CCDC41	12	94818600	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	9368633	94818600	39033295	1098	130585											
NTN4	59277	broad.mit.edu	37	chr12	96180796	96180796	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacaacatcatcttccaggCcaaatgtagcggagcagtta	9	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96180796	T	T	96180796	3	4	151	1	0	0	0	0	1	0	0	0	10797	739	26	4	1416	4	NTN4	12	96180796	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1362196	96180796	37671099	1099	130586											
NEDD1	121441	broad.mit.edu	37	chr12	97328946	97328946	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctttgtaaccataggcttgGataaaagaatcatcctctat	6	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97328946	C	C	97328946	3	2	151	1	0	0	0	0	1	0	0	0	10404	1174	41	4	725	4	NEDD1	12	97328946	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1148150	97328946	36522949	1100	130587											
NT5DC3	51559	broad.mit.edu	37	chr12	104200708	104200708	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgatttctgctggataCtaagaaagaagaaaggaact	9	6	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104200708	G	G	104200708	5	3	151	1	0	0	0	0	0	0	1	0	10787	579	20	4	1301	4	NT5DC3	12	104200708	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	6871762	104200708	29651187	1101	130588											
WSCD2	9671	broad.mit.edu	37	chr12	108603991	108603991	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgaggcagagtgcgacatGgagtgcaagggcgagcgagg	20	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108603991	C	C	108603991	3	2	151	1	0	0	0	0	1	0	0	0	17534	1348	47	4	601	4	WSCD2	12	108603991	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4403283	108603991	25247904	1102	130589											
SSH1	54434	broad.mit.edu	37	chr12	109196147	109196147	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcattccattcagagccctGggagacagatcacacaagct	9	12	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109196147	A	A	109196147	1	1	151	0	1	0	0	0	0	0	0	0	15302	1363	47	4		4	SSH1	12	109196147	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	592156	109196147	24655748	1103	130590											
GIT2	9815	broad.mit.edu	37	chr12	110418688	110418688	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggaggtaataacaaataGtgtcccaacttgtttttcta	8	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110418688	A	A	110418688	1	1	151	0	1	0	0	0	0	0	0	0	6461	1044	36	4		4	GIT2	12	110418688	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1222541	110418688	23433207	1104	130591											
PTPN11	5781	broad.mit.edu	37	chr12	112939999	112939999	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atattaagtattctctagcgGaccagacgagtggagatcag	11	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112939999	A	A	112939999	3	1	151	1	0	0	0	0	1	0	0	0	12886	1174	41	4	1705	4	PTPN11	12	112939999	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2521311	112939999	20911896	1105	130592											
RASAL1	8437	broad.mit.edu	37	chr12	113553489	113553489	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtccagaaagcgcccagcCagtccccggccaagaaagag	11	14	0	3	rs137930457	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113553489	T	T	113553489	2	4	151	1	0	0	0	0	0	0	0	1	13171	581	21	4		4	RASAL1	12	113553489	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	613490	113553489	20298406	1106	130593											
IQCD	115811	broad.mit.edu	37	chr12	113645112	113645112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgagtcgagattacacCactgcactctagtctggaca	10	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113645112	A	A	113645112	1	1	151	0	1	0	0	0	0	0	0	0	7875	609	21	2		2	IQCD	12	113645112	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	91623	113645112	20206783	1107	130594											
RBM19	9904	broad.mit.edu	37	chr12	114377880	114377880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggctgccaaaatggCcgaaggtctcctgcagctgg	14	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114377880	A	A	114377880	3	1	151	1	0	0	0	0	1	0	0	0	13229	739	26	3	1099	3	RBM19	12	114377880	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	732768	114377880	19474015	1108	130595											
TBX3	6926	broad.mit.edu	37	chr12	115112511	115112511	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtgagccttgaccgcgGggctgcccttgtcacggcag	15	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115112511	A	A	115112511	3	1	151	1	0	0	0	0	1	0	0	0	15781	1232	43	4	1010	4	TBX3	12	115112511	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	734631	115112511	18739384	1109	130596											
FBXO21	23014	broad.mit.edu	37	chr12	117604703	117604703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaccaagaaaaccttacCgcttccccaggcttaacagg	7	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117604703	A	A	117604703	3	1	151	1	0	0	0	0	1	0	0	0	5790	666	23	1	713	1	FBXO21	12	117604703	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2492192	117604703	16247192	1110	130597											
NOS1	4842	broad.mit.edu	37	chr12	117658102	117658102	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcagagagcagtgagaagGggctgggctgtgcaacgtgc	19	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117658102	C	C	117658102	1	2	151	0	1	0	0	0	0	0	0	0	10636	1247	43	4		4	NOS1	12	117658102	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	53399	117658102	16193793	1111	130598											
ABCB9	23457	broad.mit.edu	37	chr12	123428991	123428991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaggcgatgaggttgcCgctggtcatctggcctgaga	16	8	2	3	rs147318444		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123428991	A	A	123428991	3	1	151	1	0	0	0	0	1	0	0	0	48	652	23	1	997	1	ABCB9	12	123428991	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5770889	123428991	10422904	1112	130599											
LATS2	26524	broad.mit.edu	37	chr13	21620173	21620173	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctttggcctcattgttagtCcagtttccttttaccataaa	5	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21620173	A	A	21620173	1	1	151	0	1	0	0	0	0	0	0	0	8719	870	30	3		3	LATS2	13	21620173	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08		21620173	93549705	1113	130600											
ATP12A	479	broad.mit.edu	37	chr13	25276047	25276047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagttcttcattacccgtGggccttctcgttgtctttgc	9	13	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25276047	T	T	25276047	1	4	151	0	1	0	0	0	0	0	0	0	1126	1363	47	2		2	ATP12A	13	25276047	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3655874	25276047	89893831	1114	130601											
RNF17	56163	broad.mit.edu	37	chr13	25362201	25362201	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaataaaggctaaaagctaCattgaagagaaaaaaaataa	6	3	0	2	rs79685389		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25362201	T	T	25362201	2	4	151	1	0	0	0	0	0	0	0	1	13572	489	17	4		4	RNF17	13	25362201	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	86154	25362201	89807677	1115	130602											
FAM123A	219287	broad.mit.edu	37	chr13	25745110	25745110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcccccgggcgcgcgcccCtccgcggcctccgccttggc	13	24	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25745110	A	A	25745110	3	1	151	1	0	0	0	0	1	0	0	0	5468	680	24	2	1371	2	FAM123A	13	25745110	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	382909	25745110	89424768	1116	130603											
ATP8A2	51761	broad.mit.edu	37	chr13	26128042	26128042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtgaagtatactcaagCccttttcataaactgggtga	10	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26128042	A	A	26128042	3	1	151	1	0	0	0	0	1	0	0	0	1197	739	26	3	1215	3	ATP8A2	13	26128042	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	382932	26128042	89041836	1117	130604											
FLT3	2322	broad.mit.edu	37	chr13	28599148	28599148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacattttattttaaaaatGtaattcatcaaataaatgga	4	3	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28599148	T	T	28599148	1	4	151	0	1	0	0	0	0	0	0	0	6000	1392	48	3		3	FLT3	13	28599148	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2471106	28599148	86570730	1118	130605											
FLT1	2321	broad.mit.edu	37	chr13	28880861	28880861	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcagtccaggtgaagcGcttcagcatgggagaggcca	15	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28880861	T	T	28880861	3	4	151	1	0	0	0	0	1	0	0	0	5999	1087	38	3	255	3	FLT1	13	28880861	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	281713	28880861	86289017	1119	130606											
FLT1	2321	broad.mit.edu	37	chr13	29001841	29001841	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaattcataaatgttcactAatttgttgcctaccagaacc	5	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29001841	T	T	29001841	1	4	151	0	1	0	0	0	0	0	0	0	5999	377	13	5		5	FLT1	13	29001841	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	120980	29001841	86168037	1120	130607											
FLT1	2321	broad.mit.edu	37	chr13	29008344	29008344	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttccatcagggatcaaaGtgtcaagtggaaactgaaaa	10	6	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29008344	A	A	29008344	3	1	151	1	0	0	0	0	1	0	0	0	5999	1029	36	4	3856	4	FLT1	13	29008344	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6503	29008344	86161534	1121	130608											
BRCA2	675	broad.mit.edu	37	chr13	32893164	32893164	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaactgttctgggtcacaAatttgtctgtcactggttaa	8	7	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32893164	T	T	32893164	1	4	151	0	1	0	0	0	0	0	0	0	1508	29	1	5		5	BRCA2	13	32893164	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	3884820	32893164	82276714	1122	130609											
SOHLH2	54937	broad.mit.edu	37	chr13	36748988	36748988	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtacgcagctgctcacaGcaatatttgattctttccct	7	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36748988	A	A	36748988	2	1	151	1	0	0	0	0	0	0	0	1	15038	963	34	4		4	SOHLH2	13	36748988	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3855824	36748988	78420890	1123	130610											
CCNA1	8900	broad.mit.edu	37	chr13	37015285	37015285	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgagtctacttgaagcaGatccattcttgaaatatctt	7	8	3	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37015285	C	C	37015285	3	2	151	1	0	0	0	0	1	0	0	0	2939	942	33	4	1155	4	CCNA1	13	37015285	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	266297	37015285	78154593	1124	130611											
KIAA0564	23078	broad.mit.edu	37	chr13	42263515	42263515	+	Missense_Mutation	SNP	A	C	C													gatctggaaaaccaacaactAttgtagcataatttttctca							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42263515	C	C	42263515	3	2	151	1	0	0	0	0	1	0	0	0	8255	449	16	5	1659	5	KIAA0564	13	42263515	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	5248230	42263515	72906363	1125	130612	563	2									
KIAA0564	23078	broad.mit.edu	37	chr13	42263517	42263517	+	Silent	SNP	T	A	A													tctggaaaaccaacaactatTgtagcataatttttctcatc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42263517	A	A	42263517	2	1	151	1	0	0	0	0	0	0	0	1	8255	1799	63	5		5	KIAA0564	13	42263517	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	2	42263517	72906361	1126	130613	563	2									
DGKH	160851	broad.mit.edu	37	chr13	42644816	42644816	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaatatacttgagcccCcgtagcagctgatacatgaa	10	9	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42644816	T	T	42644816	1	4	151	0	1	0	0	0	0	0	0	0	4510	638	22	4		4	DGKH	13	42644816	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	381299	42644816	72525062	1127	130614											
TSC22D1	8848	broad.mit.edu	37	chr13	45148670	45148670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctgttggagggtcacaCcttggagagctggttgttgc	14	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45148670	A	A	45148670	3	1	151	1	0	0	0	0	1	0	0	0	16732	507	18	3	1821	3	TSC22D1	13	45148670	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2503854	45148670	70021208	1128	130615											
SPERT	220082	broad.mit.edu	37	chr13	46276958	46276958	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagataccagatctgaaagcCtagaaattccaatcagtgtg	9	8	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46276958	G	G	46276958	3	3	151	1	0	0	0	0	1	0	0	0	15157	680	24	4	130	4	SPERT	13	46276958	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1128288	46276958	68892920	1129	130616											
ZC3H13	23091	broad.mit.edu	37	chr13	46542960	46542960	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctcctgtgatttccaggCtttttgttttttctctatct	5	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46542960	G	G	46542960	3	3	151	1	0	0	0	0	1	0	0	0	17691	797	28	4	991	4	ZC3H13	13	46542960	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	266002	46542960	68626918	1130	130617											
RB1	5925	broad.mit.edu	37	chr13	48953816	48953816	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaatataaaaaaatttcAgccgggcgcggtggctcacg	10	9	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48953816	T	T	48953816	1	4	151	0	1	0	0	0	0	0	0	0	13206	203	7	5		5	RB1	13	48953816	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	2410856	48953816	66216062	1131	130618											
INTS6	26512	broad.mit.edu	37	chr13	51942033	51942033	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgaagattctttcataTtcttaaagcaaaagaaacaa	5	5	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51942033	C	C	51942033	2	2	151	1	0	0	0	0	0	0	0	1	7852	1507	52	5		5	INTS6	13	51942033	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	2988217	51942033	63227845	1132	130619											
ATP7B	540	broad.mit.edu	37	chr13	52520617	52520617	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgtgcttgttggggttctGaaaacaggacagagtcagag	15	5	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52520617	A	A	52520617	1	1	151	0	1	0	0	0	0	0	0	0	1195	1305	45	4		4	ATP7B	13	52520617	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	578584	52520617	62649261	1133	130620											
THSD1	55901	broad.mit.edu	37	chr13	52952445	52952445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggggactctgagacaCgtgatacactttggtagttt	12	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52952445	A	A	52952445	3	1	151	1	0	0	0	0	1	0	0	0	16000	536	19	3	902	3	THSD1	13	52952445	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	431828	52952445	62217433	1134	130621											
PCDH17	27253	broad.mit.edu	37	chr13	58240955	58240955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacttcaactaaaagccaaCcacttgaacaaggtgagtga	7	10	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58240955	A	A	58240955	3	1	151	1	0	0	0	0	1	0	0	0	11606	507	18	3	2795	3	PCDH17	13	58240955	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5288510	58240955	56928923	1135	130622											
TBC1D4	9882	broad.mit.edu	37	chr13	75923288	75923288	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaacttctcttttgccaaAgccacattaaactgtacctt	4	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75923288	G	G	75923288	1	3	151	0	1	0	0	0	0	0	0	0	15744	87	3	5		5	TBC1D4	13	75923288	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	17682333	75923288	39246590	1136	130623											
MYCBP2	23077	broad.mit.edu	37	chr13	77663000	77663000	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcgacaagcagatttcctTagggcctgtttcattgctat	8	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77663000	A	A	77663000	2	1	151	1	0	0	0	0	0	0	0	1	10112	1741	61	5		5	MYCBP2	13	77663000	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	1739712	77663000	37506878	1137	130624											
MYCBP2	23077	broad.mit.edu	37	chr13	77669677	77669677	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttaatcacctggtgagcttCcatggtgggcaaggcacgag	13	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77669677	G	G	77669677	3	3	151	1	0	0	0	0	1	0	0	0	10112	864	30	4	4125	4	MYCBP2	13	77669677	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6677	77669677	37500201	1138	130625											
SLITRK5	26050	broad.mit.edu	37	chr13	88329568	88329568	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgccgtgactcctgcggtccGgttgaatagcaccggggccc	14	15	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88329568	C	C	88329568	3	2	151	1	0	0	0	0	1	0	0	0	14860	1116	39	4	1927	4	SLITRK5	13	88329568	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	10659891	88329568	26840310	1139	130626											
DZIP1	22873	broad.mit.edu	37	chr13	96272154	96272154	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttacccgacccttctctttCttgtgttcttgatgaatagc	6	12	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96272154	A	A	96272154	3	1	151	1	0	0	0	0	1	0	0	0	4903	912	32	3	1501	3	DZIP1	13	96272154	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7942586	96272154	18897724	1140	130627											
ERCC5	2073	broad.mit.edu	37	chr13	103459781	103459781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagatggtcattatccatGgagttgtccagtgactcata	11	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103459781	T	T	103459781	3	4	151	1	0	0	0	0	1	0	0	0	5258	1357	47	2		2	ERCC5	13	103459781	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	7187627	103459781	11710097	1141	130628											
MCF2L	23263	broad.mit.edu	37	chr13	113740614	113740614	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctccgtggaatacaccAgcccagcaacttggcggcct	10	17	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113740614	T	T	113740614	1	4	151	0	1	0	0	0	0	0	0	0	9472	203	7	5		5	MCF2L	13	113740614	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	10280833	113740614	1429264	1142	130629											
POTEG	404785	broad.mit.edu	37	chr14	19571451	19571451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatttaaacttttggttTaacgttttttttgttttttt	4	2	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19571451	A	A	19571451	1	1	151	0	1	0	0	0	0	0	0	0	12362	1769	61	5		5	POTEG	14	19571451	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08		19571451	87778089	1143	130630											
OR4K5	79317	broad.mit.edu	37	chr14	20388855	20388855	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcttttctatttttgtttCttctctgtgttgtatacagt	6	7	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20388855	A	A	20388855	3	1	151	1	0	0	0	0	1	0	0	0	11167	912	32	3	92	3	OR4K5	14	20388855	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	817404	20388855	86960685	1144	130631											
OR4K5	79317	broad.mit.edu	37	chr14	20389362	20389362	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatcattgaaatactaatTgtggtcaatagtggaattct	7	5	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20389362	C	C	20389362	2	2	151	1	0	0	0	0	0	0	0	1	11167	1800	63	5		5	OR4K5	14	20389362	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	507	20389362	86960178	1145	130632											
OR4N5	390437	broad.mit.edu	37	chr14	20612100	20612100	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgggcaacttggccttacTggatgcatcctactccttca	8	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612100	A	A	20612100	3	1	151	1	0	0	0	0	1	0	0	0	11173	1580	55	5	208	5	OR4N5	14	20612100	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	222738	20612100	86737440	1146	130633											
TTC5	91875	broad.mit.edu	37	chr14	20764550	20764550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaccccaaaggtcttaccGtcgccctgttcagatgaagg	9	13	2	2	rs150011121		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20764550	T	T	20764550	3	4	151	1	0	0	0	0	1	0	0	0	16837	1159	40	3	647	3	TTC5	14	20764550	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	152450	20764550	86584990	1147	130634											
TEP1	7011	broad.mit.edu	37	chr14	20856064	20856064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatagaaacacagactgacCcttgctgggaaacaggagcc	11	11	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20856064	A	A	20856064	3	1	151	1	0	0	0	0	1	0	0	0	15881	637	22	2	5351	2	TEP1	14	20856064	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	91514	20856064	86493476	1148	130635											
SLC39A2	29986	broad.mit.edu	37	chr14	21467867	21467867	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctttgtctgtctcctcagTgtcaagtgggttgtaacttc	9	10	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21467867	G	G	21467867	1	3	151	0	1	0	0	0	0	0	0	0	14732	1711	59	5		5	SLC39A2	14	21467867	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	611803	21467867	85881673	1149	130636											
RPGRIP1	57096	broad.mit.edu	37	chr14	21794251	21794251	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctatacatgtttttgatGatgaagacttagagcctggc	10	6	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21794251	T	T	21794251	3	4	151	1	0	0	0	0	1	0	0	0	13660	1290	45	3	2691	3	RPGRIP1	14	21794251	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	326384	21794251	85555289	1150	130637											
SUPT16H	11198	broad.mit.edu	37	chr14	21829178	21829178	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcacatatccttacaagTctccaaaaaatacatgtcct	3	11	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21829178	A	A	21829178	1	1	151	0	1	0	0	0	0	0	0	0	15514	1682	58	5		5	SUPT16H	14	21829178	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	34927	21829178	85520362	1151	130638											
OR10G2	26534	broad.mit.edu	37	chr14	22102200	22102200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggggtctttggagccagCcctaaggtagatgaaaatac	13	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22102200	A	A	22102200	3	1	151	1	0	0	0	0	1	0	0	0	10993	739	26	3	136	3	OR10G2	14	22102200	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	273022	22102200	85247340	1152	130639											
PRMT5	10419	broad.mit.edu	37	chr14	23391639	23391639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catactctgccatctactgcCatagacactcactcagagtg	6	14	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23391639	A	A	23391639	1	1	151	0	1	0	0	0	0	0	0	0	12645	609	21	2		2	PRMT5	14	23391639	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1289439	23391639	83957901	1153	130640											
HAUS4	54930	broad.mit.edu	37	chr14	23419681	23419681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaactaggacgtctcagcCaatgaatacatgatgataac	7	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23419681	A	A	23419681	1	1	151	0	1	0	0	0	0	0	0	0	7034	609	21	2		2	HAUS4	14	23419681	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	28042	23419681	83929859	1154	130641											
CDH24	64403	broad.mit.edu	37	chr14	23517554	23517554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttctgcaaggccgtgatgtCgaaggcctcggtgtcctcct	13	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23517554	A	A	23517554	3	1	151	1	0	0	0	0	1	0	0	0	3139	884	31	3	368	3	CDH24	14	23517554	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	97873	23517554	83831986	1155	130642											
PABPN1	8106	broad.mit.edu	37	chr14	23793489	23793489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacagcaggccccggggtcGcgtctacaggtcaggataga	14	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23793489	T	T	23793489	3	4	151	1	0	0	0	0	1	0	0	0	11462	1087	38	3	894	3	PABPN1	14	23793489	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	275935	23793489	83556051	1156	130643											
MYH6	4624	broad.mit.edu	37	chr14	23872547	23872547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgggtggggggtggcagGcaggttcacccagcaactcc	17	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23872547	T	T	23872547	1	4	151	0	1	0	0	0	0	0	0	0	10132	1218	42	3		3	MYH6	14	23872547	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	79058	23872547	83476993	1157	130644											
MYH7	4625	broad.mit.edu	37	chr14	23883196	23883196	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgcctcccctgggcctagTccccagcagggtcactcacc	9	18	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23883196	C	C	23883196	1	2	151	0	1	0	0	0	0	0	0	0	10133	1682	58	5		5	MYH7	14	23883196	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	10649	23883196	83466344	1158	130645											
MYH7	4625	broad.mit.edu	37	chr14	23887531	23887531	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgcagctcggccttggCctccgtctcctcctcgtact	10	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23887531	T	T	23887531	3	4	151	1	0	0	0	0	1	0	0	0	10133	739	26	4	1794	4	MYH7	14	23887531	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4335	23887531	83462009	1159	130646											
PSME2	5721	broad.mit.edu	37	chr14	24612835	24612835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatggccctgagctcccCataggctgcctcatctcgct	8	18	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24612835	A	A	24612835	3	1	151	1	0	0	0	0	1	0	0	0	12813	594	21	2	129	2	PSME2	14	24612835	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	725304	24612835	82736705	1160	130647											
ADCY4	196883	broad.mit.edu	37	chr14	24800522	24800522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgatctctgccttcatctctCgggccaggtaggcaggaagg	13	11	3	1	rs148797686		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24800522	A	A	24800522	3	1	151	1	0	0	0	0	1	0	0	0	296	884	31	3	2607	3	ADCY4	14	24800522	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	187687	24800522	82549018	1161	130648											
NYNRIN	57523	broad.mit.edu	37	chr14	24883947	24883947	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtcagggaagagaaggagGagaggcaggatgaggagcag	20	3	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24883947	A	A	24883947	3	1	151	1	0	0	0	0	1	0	0	0	10891	1175	41	4	3022	4	NYNRIN	14	24883947	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	83425	24883947	82465593	1162	130649											
CMA1	1215	broad.mit.edu	37	chr14	24975648	24975648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttaggagaatgggaagtGgaaagggagaagagaggtgt	19	1	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24975648	T	T	24975648	1	4	151	0	1	0	0	0	0	0	0	0	3606	1363	47	2		2	CMA1	14	24975648	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	91701	24975648	82373892	1163	130650											
FOXG1	2290	broad.mit.edu	37	chr14	29237013	29237013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagggcgagaagaagaaCggcaagtacgagaagccgcc	16	8	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237013	A	A	29237013	3	1	151	1	0	0	0	0	1	0	0	0	6067	535	19	3	530	3	FOXG1	14	29237013	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4261365	29237013	78112527	1164	130651											
FOXG1	2290	broad.mit.edu	37	chr14	29237154	29237154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaccgcgagaacaagcaGggctggcagaactccatccg	11	13	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29237154	T	T	29237154	3	4	151	1	0	0	0	0	1	0	0	0	6067	991	35	2	671	2	FOXG1	14	29237154	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	141	29237154	78112386	1165	130652											
STRN3	29966	broad.mit.edu	37	chr14	31388178	31388178	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctaaattttgtaccttcctCtgctcttgcaccttcatgat	5	12	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31388178	T	T	31388178	3	4	151	1	0	0	0	0	1	0	0	0	15448	922	32	4	1199	4	STRN3	14	31388178	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2151024	31388178	75961362	1166	130653											
STRN3	29966	broad.mit.edu	37	chr14	31416470	31416470	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctacttcctgaagatacCtgtaagagaaaataaatatt	5	7	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31416470	A	A	31416470	5	1	151	1	0	0	0	0	0	0	1	0	15448	695	24	2	1907	2	STRN3	14	31416470	Splice_Site	SNP	C	TCGA-50-5049-01A-01D-1625-08	28292	31416470	75933070	1167	130654											
FSCB	84075	broad.mit.edu	37	chr14	44975221	44975221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaactccactaaaggggCctcttcagcaggtggaggct	13	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44975221	A	A	44975221	3	1	151	1	0	0	0	0	1	0	0	0	6126	739	26	3	1511	3	FSCB	14	44975221	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	13558751	44975221	62374319	1168	130655											
FANCM	57697	broad.mit.edu	37	chr14	45636393	45636393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattttgcatttgacacatGcatttttcccctgttcttac	4	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45636393	T	T	45636393	1	4	151	0	1	0	0	0	0	0	0	0	5728	1334	46	3		3	FANCM	14	45636393	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	661172	45636393	61713147	1169	130656											
FANCM	57697	broad.mit.edu	37	chr14	45665628	45665628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcgcatggtggtggaaaGgaggtctcaatctgagatgt	14	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45665628	T	T	45665628	3	4	151	1	0	0	0	0	1	0	0	0	5728	1000	35	2	5676	2	FANCM	14	45665628	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	29235	45665628	61683912	1170	130657											
C14orf106	55320	broad.mit.edu	37	chr14	45705137	45705137	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attactgtgccaatatatgtTagtgacgtctctaggaaaaa	8	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45705137	C	C	45705137	3	2	151	1	0	0	0	0	1	0	0	0	1751	1754	61	5	2218	5	C14orf106	14	45705137	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	39509	45705137	61644403	1171	130658											
NIN	51199	broad.mit.edu	37	chr14	51211095	51211095	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgcagctgtaagagatAaacaaatgagccctcccatc	8	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51211095	G	G	51211095	1	3	151	0	1	0	0	0	0	0	0	0	10512	377	13	5		5	NIN	14	51211095	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	5505958	51211095	56138445	1172	130659											
DAAM1	23002	broad.mit.edu	37	chr14	59830539	59830539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgagtgttgtttgaccgGgctgggcttcagtgtgatac	14	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59830539	T	T	59830539	1	4	151	0	1	0	0	0	0	0	0	0	4248	1247	43	2		2	DAAM1	14	59830539	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	8619444	59830539	47519001	1173	130660											
RTN1	6252	broad.mit.edu	37	chr14	60097107	60097107	+	Intron	SNP	C	T	T													atgatgcacaatggacgagtCcaggtcccgggtttcccgtg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60097107	T	T	60097107	1	4	151	0	1	0	0	0	0	0	0	0	13836	870	30	4		4	RTN1	14	60097107	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	266568	60097107	47252433	1174	130661	564	2									
RTN1	6252	broad.mit.edu	37	chr14	60097113	60097113	+	Intron	SNP	C	T	T													cacaatggacgagtccaggtCccgggtttcccgtgcgcctc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60097113	T	T	60097113	1	4	151	0	1	0	0	0	0	0	0	0	13836	870	30	4		4	RTN1	14	60097113	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	6	60097113	47252427	1175	130662	564	2									
KCNH5	27133	broad.mit.edu	37	chr14	63316265	63316265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacttacaaatacagaaTaacagttacgaagcaattat	5	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63316265	A	A	63316265	1	1	151	0	1	0	0	0	0	0	0	0	8105	1421	49	5		5	KCNH5	14	63316265	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	3219152	63316265	44033275	1176	130663											
SYNE2	23224	broad.mit.edu	37	chr14	64421515	64421515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccatcattcatgccttGcgaccagacctaattgacat	7	12	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64421515	T	T	64421515	3	4	151	1	0	0	0	0	1	0	0	0	15565	1310	46	3	695	3	SYNE2	14	64421515	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1105250	64421515	42928025	1177	130664											
SPTB	6710	broad.mit.edu	37	chr14	65259901	65259901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgttggtagagctccCgcagggcctgcagccgatgg	14	14	0	1	rs150013838		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65259901	A	A	65259901	3	1	151	1	0	0	0	0	1	0	0	0	15236	652	23	1	4667	1	SPTB	14	65259901	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	838386	65259901	42089639	1178	130665											
PCNX	22990	broad.mit.edu	37	chr14	71444226	71444226	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctactgcagtggaacggaccGggacactaacagtactgtca	11	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71444226	C	C	71444226	3	2	151	1	0	0	0	0	1	0	0	0	11685	1116	39	4	1194	4	PCNX	14	71444226	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6184325	71444226	35905314	1179	130666											
ENTPD5	957	broad.mit.edu	37	chr14	74439636	74439636	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatagtaagagaaagcataGaaggaacctctctggacctc	9	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74439636	A	A	74439636	2	1	151	1	0	0	0	0	0	0	0	1	5184	933	33	4		4	ENTPD5	14	74439636	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	2995410	74439636	32909904	1180	130667											
TTLL5	23093	broad.mit.edu	37	chr14	76368394	76368394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagccacaggagaagcaGcaccaagagcaagaagcgaa	12	9	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76368394	T	T	76368394	1	4	151	0	1	0	0	0	0	0	0	0	16856	986	34	3		3	TTLL5	14	76368394	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1928758	76368394	30981146	1181	130668											
TMEM63C	57156	broad.mit.edu	37	chr14	77715676	77715676	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacttgacggatcgctataAcatgtactactcctttgcac	7	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77715676	G	G	77715676	3	3	151	1	0	0	0	0	1	0	0	0	16315	43	2	5	1987	5	TMEM63C	14	77715676	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1347282	77715676	29633864	1182	130669											
ADCK1	57143	broad.mit.edu	37	chr14	78399723	78399723	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatatgctggctgttccctGctccactctgagtggaattg	10	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78399723	C	C	78399723	3	2	151	1	0	0	0	0	1	0	0	0	288	1319	46	4	1599	4	ADCK1	14	78399723	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	684047	78399723	28949817	1183	130670											
NRXN3	9369	broad.mit.edu	37	chr14	79176039	79176039	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgagactagacgaaagCtgtagcttctcagtttgttt	10	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79176039	A	A	79176039	1	1	151	0	1	0	0	0	0	0	0	0	10762	812	28	3		3	NRXN3	14	79176039	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	776316	79176039	28173501	1184	130671											
STON2	85439	broad.mit.edu	37	chr14	81744278	81744278	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctcataatacagctgCaggtaaccagtgtctgtcag	9	12	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81744278	A	A	81744278	2	1	151	1	0	0	0	0	0	0	0	1	15436	697	25	3		3	STON2	14	81744278	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2568239	81744278	25605262	1185	130672											
KCNK10	54207	broad.mit.edu	37	chr14	88737034	88737034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctgccacctcatctcaCatctgtgctttcctgtcccc	5	19	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88737034	A	A	88737034	1	1	151	0	1	0	0	0	0	0	0	0	8129	493	17	3		3	KCNK10	14	88737034	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	6992756	88737034	18612506	1186	130673											
C14orf143	90141	broad.mit.edu	37	chr14	90397866	90397866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcaaaaggtggtgtacagAaggattttgatgccttacct	10	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90397866	G	G	90397866	1	3	151	0	1	0	0	0	0	0	0	0	1761	261	9	5		5	C14orf143	14	90397866	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1660832	90397866	16951674	1187	130674											
C14orf102	55051	broad.mit.edu	37	chr14	90755074	90755074	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacccaaacagtcctgcAgtgcgtgctcataagccttt	8	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90755074	T	T	90755074	3	4	151	1	0	0	0	0	1	0	0	0	1748	188	7	5	865	5	C14orf102	14	90755074	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	357208	90755074	16594466	1188	130675											
RPS6KA5	9252	broad.mit.edu	37	chr14	91338348	91338348	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaaacatttttaaaagcaTaaaagatcgcctcaggcata	8	7	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91338348	A	A	91338348	1	1	151	0	1	0	0	0	0	0	0	0	13765	1421	49	5		5	RPS6KA5	14	91338348	3'UTR	SNP	T	TCGA-50-5049-01A-01D-1625-08	583274	91338348	16011192	1189	130676											
FBLN5	10516	broad.mit.edu	37	chr14	92353602	92353602	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcggcagatgaaagagccgTaggtgttgacgcaggtttgc	16	7	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92353602	A	A	92353602	3	1	151	1	0	0	0	0	1	0	0	0	5757	1638	57	5	692	5	FBLN5	14	92353602	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1015254	92353602	14995938	1190	130677											
LGMN	5641	broad.mit.edu	37	chr14	93180256	93180256	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagaatattgtcagacCaacacatcaagagaaactat	8	7	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93180256	G	G	93180256	1	3	151	0	1	0	0	0	0	0	0	0	8827	609	21	4		4	LGMN	14	93180256	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	826654	93180256	14169284	1191	130678											
DDX24	57062	broad.mit.edu	37	chr14	94527508	94527508	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagattagcagagacagacaTcagcacagtgtaatgcccta	9	10	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94527508	A	A	94527508	1	1	151	0	1	0	0	0	0	0	0	0	4384	1450	50	5		5	DDX24	14	94527508	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1347252	94527508	12822032	1192	130679											
SERPINA12	145264	broad.mit.edu	37	chr14	94964191	94964191	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcccatgggttttttgacTgataaagtcattgatctgct	8	7	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94964191	G	G	94964191	3	3	151	1	0	0	0	0	1	0	0	0	14202	1580	55	5	716	5	SERPINA12	14	94964191	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	436683	94964191	12385349	1193	130680											
SERPINA4	5267	broad.mit.edu	37	chr14	95030068	95030068	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccccgctgagcatctcGgcggcctacgccatgctttc	9	17	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95030068	T	T	95030068	2	4	151	1	0	0	0	0	0	0	0	1	14204	1103	39	1		1	SERPINA4	14	95030068	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	65877	95030068	12319472	1194	130681											
EML1	2009	broad.mit.edu	37	chr14	100363487	100363487	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacatccacaaagctatgGgtacaggggtcgagactgcc	12	10	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100363487	T	T	100363487	3	4	151	1	0	0	0	0	1	0	0	0	5138	1232	43	2	770	2	EML1	14	100363487	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	5333419	100363487	6986053	1195	130682											
DLK1	8788	broad.mit.edu	37	chr14	101195327	101195327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcgtgacctctcccggCtgccttcacggactctgtgg	12	15	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101195327	A	A	101195327	2	1	151	1	0	0	0	0	0	0	0	1	4604	784	28	3		3	DLK1	14	101195327	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	831840	101195327	6154213	1196	130683											
HSP90AA1	3320	broad.mit.edu	37	chr14	102548655	102548655	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtgtttctttgctgccaTgtaacccattgttgagttgt	10	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102548655	C	C	102548655	3	2	151	1	0	0	0	0	1	0	0	0	7470	1464	51	5	324	5	HSP90AA1	14	102548655	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1353328	102548655	4800885	1197	130684											
TECPR2	9895	broad.mit.edu	37	chr14	102906564	102906564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagtgaagcttggagacGggcggtgacatggagcctga	18	6	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102906564	T	T	102906564	1	4	151	0	1	0	0	0	0	0	0	0	15866	1131	39	1		1	TECPR2	14	102906564	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	357909	102906564	4442976	1198	130685											
PLD4	122618	broad.mit.edu	37	chr14	105398445	105398445	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggactcaacacggacccCaccatgttcccctacctgcg	8	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105398445	A	A	105398445	2	1	151	1	0	0	0	0	0	0	0	1	12143	581	21	2		2	PLD4	14	105398445	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2491881	105398445	1951095	1199	130686											
AHNAK2	113146	broad.mit.edu	37	chr14	105413236	105413236	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttaagatccccttgcatgGaggggaagctcccgtcagct	11	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105413236	C	C	105413236	3	2	151	1	0	0	0	0	1	0	0	0	415	1174	41	4	8839	4	AHNAK2	14	105413236	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	14791	105413236	1936304	1200	130687											
AHNAK2	113146	broad.mit.edu	37	chr14	105416310	105416310	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacgacggcatcttgaacttGggcattttgaacttgctgtc	10	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105416310	C	C	105416310	2	2	151	1	0	0	0	0	0	0	0	1	415	1335	47	4		4	AHNAK2	14	105416310	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3074	105416310	1933230	1201	130688											
AHNAK2	113146	broad.mit.edu	37	chr14	105418992	105418992	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaacatctatctgggggccCttgaggtccactttgggcat	11	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105418992	T	T	105418992	2	4	151	1	0	0	0	0	0	0	0	1	415	680	24	4		4	AHNAK2	14	105418992	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2682	105418992	1930548	1202	130689											
PACS2	23241	broad.mit.edu	37	chr14	105814720	105814720	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcagtcacaccccgcCctgcaccccagggtgcaggc	11	20	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105814720	T	T	105814720	1	4	151	0	1	0	0	0	0	0	0	0	11467	638	22	4		4	PACS2	14	105814720	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	395728	105814720	1534820	1203	130690											
SNRPN	6638	broad.mit.edu	37	chr15	25154280	25154280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatcatgtctggagttacCctgttctttatgtattgaga	8	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25154280	A	A	25154280	1	1	151	0	1	0	0	0	0	0	0	0	14984	638	22	2		2	SNRPN	15	25154280	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08		25154280	77377112	1204	130691											
GABRA5	2558	broad.mit.edu	37	chr15	27159994	27159994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgcagcttgaggacttccCgatggatgcgcacgcttgcc	12	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27159994	T	T	27159994	3	4	151	1	0	0	0	0	1	0	0	0	6224	652	23	4	560	4	GABRA5	15	27159994	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2005714	27159994	75371398	1205	130692											
GABRG3	2567	broad.mit.edu	37	chr15	27572050	27572050	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttactctgaacagcaacaTggtggggttaatctggatcc	10	9	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27572050	A	A	27572050	3	1	151	1	0	0	0	0	1	0	0	0	6233	1464	51	5	379	5	GABRG3	15	27572050	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	412056	27572050	74959342	1206	130693											
HERC2	8924	broad.mit.edu	37	chr15	28380867	28380867	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaaaagcaatagtaacatCagtttttaatctcaatatcc	4	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28380867	T	T	28380867	1	4	151	0	1	0	0	0	0	0	0	0	7125	841	29	4		4	HERC2	15	28380867	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	808817	28380867	74150525	1207	130694											
APBA2	321	broad.mit.edu	37	chr15	29346661	29346661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actactgtgccagcaaagagGgctaccaggactactacccc	9	14	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29346661	T	T	29346661	3	4	151	1	0	0	0	0	1	0	0	0	759	1232	43	2	576	2	APBA2	15	29346661	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	965794	29346661	73184731	1208	130695											
TRPM1	4308	broad.mit.edu	37	chr15	31355463	31355463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagggcccccctccaccaCgagacccacgaggggcacgc	12	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31355463	A	A	31355463	3	1	151	1	0	0	0	0	1	0	0	0	16710	536	19	3	4138	3	TRPM1	15	31355463	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2008802	31355463	71175929	1209	130696											
RYR3	6263	broad.mit.edu	37	chr15	33893789	33893789	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattccaaatgccaagcatAgttctgcctgtcttgtcccc	6	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33893789	T	T	33893789	1	4	151	0	1	0	0	0	0	0	0	0	13881	435	15	5		5	RYR3	15	33893789	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	2538326	33893789	68637603	1210	130697											
RYR3	6263	broad.mit.edu	37	chr15	33990137	33990137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaacctcatgagagtcctGggcatgcacgagacggtgat	12	12	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33990137	T	T	33990137	2	4	151	1	0	0	0	0	0	0	0	1	13881	1335	47	2		2	RYR3	15	33990137	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	96348	33990137	68541255	1211	130698											
RYR3	6263	broad.mit.edu	37	chr15	34015046	34015046	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcagggtgccattaagatCtctgagaacccagcgctcga	11	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34015046	A	A	34015046	2	1	151	1	0	0	0	0	0	0	0	1	13881	903	32	3		3	RYR3	15	34015046	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	24909	34015046	68516346	1212	130699											
PPP1R14D	54866	broad.mit.edu	37	chr15	41120575	41120575	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcctcccactatccgctgTgctacctacctggaagagct	7	16	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41120575	C	C	41120575	1	2	151	0	1	0	0	0	0	0	0	0	12463	1711	59	5		5	PPP1R14D	15	41120575	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	7105529	41120575	61410817	1213	130700											
MAPKBP1	23005	broad.mit.edu	37	chr15	42110921	42110921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcttgacctgaagtggaGggtggctctggtctccttgc	15	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42110921	T	T	42110921	1	4	151	0	1	0	0	0	0	0	0	0	9384	1015	35	2		2	MAPKBP1	15	42110921	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	990346	42110921	60420471	1214	130701											
TGM5	9333	broad.mit.edu	37	chr15	43552216	43552216	+	Intron	DEL	G	-	-													ctggcagcactgacagaagaGaaaggagggcaccgcctggg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43552216	-	-	43552216	6	5	151	0	1	1	0	1	0	0	0	0	15956	957	33	0		0	TGM5	15	43552216	Intron	DEL	G	TCGA-50-5049-01A-01D-1625-08	1441295	43552216	58979176	1215	130702											
LCMT2	9836	broad.mit.edu	37	chr15	43621883	43621883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaattcattcatgtccaCggcaccgcaggcggtccagc	10	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43621883	A	A	43621883	3	1	151	1	0	0	0	0	1	0	0	0	8751	536	19	3	1259	3	LCMT2	15	43621883	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	69667	43621883	58909509	1216	130703											
MFAP1	4236	broad.mit.edu	37	chr15	44102041	44102041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgactttgccgtttgccCgaagttcagctctcctctct	7	13	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44102041	A	A	44102041	3	1	151	1	0	0	0	0	1	0	0	0	9606	652	23	1	372	1	MFAP1	15	44102041	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	480158	44102041	58429351	1217	130704											
SEMA6D	80031	broad.mit.edu	37	chr15	48051992	48051992	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctgacttcaccttggccCaccatgagggtcttcctgct	8	16	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48051992	A	A	48051992	1	1	151	0	1	0	0	0	0	0	0	0	14155	609	21	2		2	SEMA6D	15	48051992	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	3949951	48051992	54479400	1218	130705											
SEMA6D	80031	broad.mit.edu	37	chr15	48056105	48056105	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggtggttcccagcgggTcctggagaaacactggactt	14	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48056105	C	C	48056105	3	2	151	1	0	0	0	0	1	0	0	0	14155	1667	58	5	840	5	SEMA6D	15	48056105	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	4113	48056105	54475287	1219	130706											
SEMA6D	80031	broad.mit.edu	37	chr15	48063273	48063273	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgctacccatgactacaAcacgtctttctcaaactcca	3	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48063273	G	G	48063273	3	3	151	1	0	0	0	0	1	0	0	0	14155	43	2	5	2626	5	SEMA6D	15	48063273	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	7168	48063273	54468119	1220	130707											
FBN1	2200	broad.mit.edu	37	chr15	48729176	48729176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctacacattcattccctgCtagaatataaccaaagggac	5	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48729176	A	A	48729176	3	1	151	1	0	0	0	0	1	0	0	0	5759	797	28	3	2193	3	FBN1	15	48729176	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	665903	48729176	53802216	1221	130708											
GRINL1A	81488	broad.mit.edu	37	chr15	58001046	58001046	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgttagtttagactgtaAgctaaggcaaaaagcaattg	9	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58001046	T	T	58001046	3	4	151	1	0	0	0	0	1	0	0	0	6852	72	3	5	254	5	GRINL1A	15	58001046	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	9271870	58001046	44530346	1222	130709											
ALDH1A2	8854	broad.mit.edu	37	chr15	58285171	58285171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggctcccatgtagagtGcactgagtggtgtttgctct	14	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58285171	T	T	58285171	3	4	151	1	0	0	0	0	1	0	0	0	491	1319	46	3	932	3	ALDH1A2	15	58285171	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	284125	58285171	44246221	1223	130710											
HERC1	8925	broad.mit.edu	37	chr15	63955193	63955193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacacacccaggtaggcCaatccagtacctctgggatc	8	15	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63955193	A	A	63955193	3	1	151	1	0	0	0	0	1	0	0	0	7124	595	21	2	5834	2	HERC1	15	63955193	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5670022	63955193	38576199	1224	130711											
RBPMS2	348093	broad.mit.edu	37	chr15	65054748	65054748	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagaccccactgagaaccAggacactgcactcagggtcc	10	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65054748	T	T	65054748	1	4	151	0	1	0	0	0	0	0	0	0	13272	203	7	5		5	RBPMS2	15	65054748	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1099555	65054748	37476644	1225	130712											
IGDCC3	9543	broad.mit.edu	37	chr15	65622728	65622728	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttcacctcatacactgcAgtggggtctggaggaaggca	13	10	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65622728	T	T	65622728	2	4	151	1	0	0	0	0	0	0	0	1	7638	175	7	5		5	IGDCC3	15	65622728	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	567980	65622728	36908664	1226	130713											
IGDCC4	57722	broad.mit.edu	37	chr15	65677373	65677373	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagggcccgggtcagagcCggccgggggcctgcctgggg	21	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65677373	A	A	65677373	2	1	151	1	0	0	0	0	0	0	0	1	7639	639	23	1		1	IGDCC4	15	65677373	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	54645	65677373	36854019	1227	130714											
IGDCC4	57722	broad.mit.edu	37	chr15	65702597	65702597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaatgtggcactcaaagCgagctgtcccgttctcctcc	8	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65702597	A	A	65702597	3	1	151	1	0	0	0	0	1	0	0	0	7639	768	27	3	3342	3	IGDCC4	15	65702597	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	25224	65702597	36828795	1228	130715											
SPESP1	246777	broad.mit.edu	37	chr15	69238614	69238614	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcttagtgacaccagcaaCccagcatatagagaagatat	7	10	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69238614	G	G	69238614	3	3	151	1	0	0	0	0	1	0	0	0	15158	506	18	4	747	4	SPESP1	15	69238614	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3536017	69238614	33292778	1229	130716											
THSD4	79875	broad.mit.edu	37	chr15	71534924	71534924	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctctaccacggaccagagCttctgagttaacatgaaatt	7	11	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71534924	G	G	71534924	1	3	151	0	1	0	0	0	0	0	0	0	16001	812	28	4		4	THSD4	15	71534924	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2296310	71534924	30996468	1230	130717											
ARIH1	25820	broad.mit.edu	37	chr15	72873191	72873191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagaaaatggaggagatGcagcagcacaacatgtcctg	11	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72873191	T	T	72873191	3	4	151	1	0	0	0	0	1	0	0	0	925	1319	46	3	1381	3	ARIH1	15	72873191	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1338267	72873191	29658201	1231	130718											
GOLGA6B	55889	broad.mit.edu	37	chr15	72953619	72953619	+	Silent	SNP	A	G	G													atccagtcctcgagctgcagAgaagcggtcctccaccggcg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72953619	G	G	72953619	2	3	151	1	0	0	0	0	0	0	0	1	6622	301	11	5		5	GOLGA6B	15	72953619	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	80428	72953619	29577773	1232	130719	565	2									
GOLGA6B	55889	broad.mit.edu	37	chr15	72953626	72953626	+	Missense_Mutation	SNP	G	T	T													cctcgagctgcagagaagcgGtcctccaccggcggttacag							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72953626	T	T	72953626	3	4	151	1	0	0	0	0	1	0	0	0	6622	1261	44	3	616	3	GOLGA6B	15	72953626	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	7	72953626	29577766	1233	130720	565	2									
ADPGK	83440	broad.mit.edu	37	chr15	73067446	73067446	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acatgcattgactctagaagGaggaaaaaaactgtgtgaaa	10	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73067446	A	A	73067446	1	1	151	0	1	0	0	0	0	0	0	0	330	1189	41	4		4	ADPGK	15	73067446	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	113820	73067446	29463946	1234	130721											
NEO1	4756	broad.mit.edu	37	chr15	73594951	73594951	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacagtgttttcttttccaTagagctatgaaccagatgag	8	7	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73594951	A	A	73594951	1	1	151	0	1	0	0	0	0	0	0	0	10431	1421	49	5		5	NEO1	15	73594951	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	527505	73594951	28936441	1235	130722											
PML	5371	broad.mit.edu	37	chr15	74337270	74337270	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggcctgttggagggtcCggcgctggcacgggcagaag	19	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74337270	T	T	74337270	3	4	151	1	0	0	0	0	1	0	0	0	12230	652	23	4	3621	4	PML	15	74337270	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	742319	74337270	28194122	1236	130723											
SIN3A	25942	broad.mit.edu	37	chr15	75684637	75684637	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcactcttgtctcgctttaTgcccagcacttcccgttccc	6	17	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75684637	C	C	75684637	3	2	151	1	0	0	0	0	1	0	0	0	14438	1464	51	5	1052	5	SIN3A	15	75684637	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1347367	75684637	26846755	1237	130724											
SNUPN	10073	broad.mit.edu	37	chr15	75890754	75890754	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgggaagaacccttcaacTtgggagtagacaggtgctcc	12	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75890754	A	A	75890754	3	1	151	1	0	0	0	0	1	0	0	0	14991	1609	56	5	58	5	SNUPN	15	75890754	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	206117	75890754	26640638	1238	130725											
CSPG4	1464	broad.mit.edu	37	chr15	75981912	75981912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggccttgcggttcaccacGtccaggagggtgaacatttt	13	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75981912	T	T	75981912	3	4	151	1	0	0	0	0	1	0	0	0	3994	1136	40	3	5506	3	CSPG4	15	75981912	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	91158	75981912	26549480	1239	130726											
FSD2	123722	broad.mit.edu	37	chr15	83455968	83455968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgagccttaccatcccCtgctcctcttgactcattgg	6	15	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83455968	A	A	83455968	3	1	151	1	0	0	0	0	1	0	0	0	6131	681	24	2	2122	2	FSD2	15	83455968	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7474056	83455968	19075424	1240	130727											
BNC1	646	broad.mit.edu	37	chr15	83931874	83931874	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctatctgccttgctaatGcatgctgacccacgtgctcc	7	15	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83931874	C	C	83931874	3	2	151	1	0	0	0	0	1	0	0	0	1480	1319	46	4	863	4	BNC1	15	83931874	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	475906	83931874	18599518	1241	130728											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84611675	84611675	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttccaggacttgtggcggGggaactcagaacagaagagt	15	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84611675	C	C	84611675	2	2	151	1	0	0	0	0	0	0	0	1	276	1219	43	4		4	ADAMTSL3	15	84611675	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	679801	84611675	17919717	1242	130729											
ACAN	176	broad.mit.edu	37	chr15	89400832	89400832	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtggaagtggtcacagcCtccactgcaagtgaactgga	13	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89400832	A	A	89400832	2	1	151	1	0	0	0	0	0	0	0	1	117	668	24	2		2	ACAN	15	89400832	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	4789157	89400832	13130560	1243	130730											
BLM	641	broad.mit.edu	37	chr15	91303889	91303889	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttcttggctcattgtggaGatacaggcctgattcacttg	10	9	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91303889	A	A	91303889	3	1	151	1	0	0	0	0	1	0	0	0	1451	942	33	4	1308	4	BLM	15	91303889	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1903057	91303889	11227503	1244	130731											
SV2B	9899	broad.mit.edu	37	chr15	91803568	91803568	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgggcaaacatgatgaaGcctggatgattctcaagcaa	11	7	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91803568	A	A	91803568	3	1	151	1	0	0	0	0	1	0	0	0	15536	971	34	4	955	4	SV2B	15	91803568	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	499679	91803568	10727824	1245	130732											
SNRPA1	6627	broad.mit.edu	37	chr15	101825088	101825088	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggcactactctggcattCcagagtcatggcatctaaat	10	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101825088	A	A	101825088	1	1	151	0	1	0	0	0	0	0	0	0	14974	870	30	3		3	SNRPA1	15	101825088	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	10021520	101825088	706304	1246	130733											
WDR90	197335	broad.mit.edu	37	chr16	709129	709129	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccagcctgcaagacaggtGagtggctgtgctcagctggg	15	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	709129	T	T	709129	1	4	151	0	1	0	0	0	0	0	0	0	17464	1305	45	3		3	WDR90	16	709129	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08		709129	89645624	1247	130734											
PTX4	390667	broad.mit.edu	37	chr16	1537990	1537990	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgtaaggaggacacggtGatgatggggcgggccgggcc	19	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1537990	T	T	1537990	1	4	151	0	1	0	0	0	0	0	0	0	12931	1305	45	3		3	PTX4	16	1537990	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	828861	1537990	88816763	1248	130735											
CRAMP1L	57585	broad.mit.edu	37	chr16	1710023	1710023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccaggcctccctccgcaGcagcaagaccttcccgccca	8	20	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1710023	T	T	1710023	3	4	151	1	0	0	0	0	1	0	0	0	3878	971	34	3	2410	3	CRAMP1L	16	1710023	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	172033	1710023	88644730	1249	130736											
THOC6	79228	broad.mit.edu	37	chr16	3075832	3075832	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgccatcttcaggtaccctCtgccgctgtccacccattag	7	16	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3075832	G	G	3075832	1	3	151	0	1	0	0	0	0	0	0	0	15992	928	32	4		4	THOC6	16	3075832	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1365809	3075832	87278921	1250	130737											
A2BP1	54715	broad.mit.edu	37	chr16	7568444	7568444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggggaggcgcccccagcCctggtaatggcagcgggggt	18	11	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7568444	A	A	7568444	1	1	151	0	1	0	0	0	0	0	0	0	3	638	22	2		2	A2BP1	16	7568444	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	4492612	7568444	82786309	1251	130738											
A2BP1	54715	broad.mit.edu	37	chr16	7714987	7714987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgtaagtattcattcacGtgcatgccatccccgtttcc	6	12	2	0	rs77347896	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7714987	T	T	7714987	1	4	151	0	1	0	0	0	0	0	0	0	3	1160	40	3		3	A2BP1	16	7714987	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	146543	7714987	82639766	1252	130739											
A2BP1	54715	broad.mit.edu	37	chr16	7760514	7760514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatgggtagggggtgcCtccatttcggttggttttga	17	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7760514	A	A	7760514	1	1	151	0	1	0	0	0	0	0	0	0	3	696	24	2		2	A2BP1	16	7760514	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	45527	7760514	82594239	1253	130740											
USP7	7874	broad.mit.edu	37	chr16	9010305	9010305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttggtaataacttctgaCcatgcttcaaaatattcatt	4	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9010305	A	A	9010305	1	1	151	0	1	0	0	0	0	0	0	0	17215	522	18	3		3	USP7	16	9010305	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1249791	9010305	81344448	1254	130741											
GRIN2A	2903	broad.mit.edu	37	chr16	9984826	9984826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcccctgcattcagcaCacagaaggatgctcaccttt	6	16	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9984826	A	A	9984826	1	1	151	0	1	0	0	0	0	0	0	0	6845	493	17	3		3	GRIN2A	16	9984826	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	974521	9984826	80369927	1255	130742											
CPPED1	55313	broad.mit.edu	37	chr16	12758931	12758931	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggttctggtaggtaccccCggcattcctgtggtagtggc	15	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12758931	G	G	12758931	3	3	151	1	0	0	0	0	1	0	0	0	3854	652	23	4	191	4	CPPED1	16	12758931	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2774105	12758931	77595822	1256	130743											
C16orf45	89927	broad.mit.edu	37	chr16	15661764	15661764	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccacctttaatagcttcttTgtgttaaccgggtgatgctc	8	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15661764	C	C	15661764	1	2	151	0	1	0	0	0	0	0	0	0	1828	1827	63	5		5	C16orf45	16	15661764	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	2902833	15661764	74692989	1257	130744											
XYLT1	64131	broad.mit.edu	37	chr16	17202756	17202756	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccgtggaggctgcgttcctCcgtgcctgttccacctgggc	13	16	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17202756	A	A	17202756	2	1	151	1	0	0	0	0	0	0	0	1	17590	842	30	3		3	XYLT1	16	17202756	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1540992	17202756	73151997	1258	130745											
ARL6IP1	23204	broad.mit.edu	37	chr16	18810034	18810034	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcacttacagaaacaccaaAgaaaccacacccatgatggc	5	14	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18810034	G	G	18810034	2	3	151	1	0	0	0	0	0	0	0	1	946	59	3	5		5	ARL6IP1	16	18810034	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	1607278	18810034	71544719	1259	130746											
ITPRIPL2	162073	broad.mit.edu	37	chr16	19127126	19127126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggactgcctgctgcgacGccatacgctcttccactgcg	11	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19127126	T	T	19127126	3	4	151	1	0	0	0	0	1	0	0	0	7995	1087	38	3	1345	3	ITPRIPL2	16	19127126	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	317092	19127126	71227627	1260	130747											
UMOD	7369	broad.mit.edu	37	chr16	20357478	20357478	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccacaggggccatcccgGgctggggtcactacagacac	13	15	1	1	rs143764582		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20357478	T	T	20357478	2	4	151	1	0	0	0	0	0	0	0	1	17105	1219	43	2		2	UMOD	16	20357478	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1230352	20357478	69997275	1261	130748											
DCUN1D3	123879	broad.mit.edu	37	chr16	20873563	20873563	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aattgcatcttcccgctcatCcttgtagcgcctgaacagtt	7	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20873563	G	G	20873563	3	3	151	1	0	0	0	0	1	0	0	0	4348	855	30	4	624	4	DCUN1D3	16	20873563	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	516085	20873563	69481190	1262	130749											
ANKS4B	257629	broad.mit.edu	37	chr16	21245167	21245167	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagacggcatgactcctactCtcttggcagcctaccatggg	10	13	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21245167	G	G	21245167	3	3	151	1	0	0	0	0	1	0	0	0	691	913	32	4	111	4	ANKS4B	16	21245167	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	371604	21245167	69109586	1263	130750											
OTOA	146183	broad.mit.edu	37	chr16	21728154	21728154	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggattttattgcctgtgaTgtagtgcctggcccttcctc	10	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21728154	A	A	21728154	1	1	151	0	1	0	0	0	0	0	0	0	11396	1479	51	5		5	OTOA	16	21728154	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	482987	21728154	68626599	1264	130751											
HS3ST2	9956	broad.mit.edu	37	chr16	22826315	22826315	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaaggggggcacccgGgccgtgctggagtttatccg	18	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22826315	C	C	22826315	2	2	151	1	0	0	0	0	0	0	0	1	7431	1219	43	4		4	HS3ST2	16	22826315	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1098161	22826315	67528438	1265	130752											
USP31	57478	broad.mit.edu	37	chr16	23080339	23080339	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctggctcagaagtgcctttGgaactgggggatctcttagt	13	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23080339	C	C	23080339	2	2	151	1	0	0	0	0	0	0	0	1	17189	1335	47	4		4	USP31	16	23080339	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	254024	23080339	67274414	1266	130753											
USP31	57478	broad.mit.edu	37	chr16	23085137	23085137	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagacctcatcttctgaCagctgctgcacatcgctgtc	9	14	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23085137	G	G	23085137	2	3	151	1	0	0	0	0	0	0	0	1	17189	465	17	4		4	USP31	16	23085137	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	4798	23085137	67269616	1267	130754											
COG7	91949	broad.mit.edu	37	chr16	23436189	23436189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccacgccgttgctgaggCaggagggcagcgagggcatg	17	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23436189	A	A	23436189	3	1	151	1	0	0	0	0	1	0	0	0	3695	710	25	3	1466	3	COG7	16	23436189	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	351052	23436189	66918564	1268	130755											
PALB2	79728	broad.mit.edu	37	chr16	23640575	23640575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtttatgctatcagaagCaggaagctctgctgtttcag	12	7	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23640575	A	A	23640575	3	1	151	1	0	0	0	0	1	0	0	0	11500	710	25	3	1056	3	PALB2	16	23640575	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	204386	23640575	66714178	1269	130756											
PALB2	79728	broad.mit.edu	37	chr16	23646849	23646849	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaagttttggttttcatTtgctggtaagttattgtagg	10	2	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23646849	G	G	23646849	3	3	151	1	0	0	0	0	1	0	0	0	11500	1841	64	5	2582	5	PALB2	16	23646849	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	6274	23646849	66707904	1270	130757											
CACNG3	10368	broad.mit.edu	37	chr16	24358024	24358024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagctctgtctcctcccCcaggctcagaacccttatct	6	18	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24358024	A	A	24358024	1	1	151	0	1	0	0	0	0	0	0	0	2584	638	22	2		2	CACNG3	16	24358024	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	711175	24358024	65996729	1271	130758											
SLC5A11	115584	broad.mit.edu	37	chr16	24888606	24888606	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgcaggtgccatcttcAtccagcagtctttgcacctg	9	12	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24888606	T	T	24888606	3	4	151	1	0	0	0	0	1	0	0	0	14777	217	8	5	527	5	SLC5A11	16	24888606	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	530582	24888606	65466147	1272	130759											
LCMT1	51451	broad.mit.edu	37	chr16	25189362	25189362	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatctgtcgaaggcttatgCcgagccagaagccgaagcca	11	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25189362	T	T	25189362	1	4	151	0	1	0	0	0	0	0	0	0	8750	754	26	4		4	LCMT1	16	25189362	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	300756	25189362	65165391	1273	130760											
IL4R	3566	broad.mit.edu	37	chr16	27372040	27372040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgccgtactccaggccgGgctgcaaggccactctgctc	11	16	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27372040	T	T	27372040	1	4	151	0	1	0	0	0	0	0	0	0	7768	1247	43	2		2	IL4R	16	27372040	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2182678	27372040	62982713	1274	130761											
GTF3C1	2975	broad.mit.edu	37	chr16	27492362	27492362	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggccttttcttcttgcccTgcgagggccacatggaacca	10	14	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27492362	A	A	27492362	1	1	151	0	1	0	0	0	0	0	0	0	6937	1595	55	5		5	GTF3C1	16	27492362	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	120322	27492362	62862391	1275	130762											
ITGAL	3683	broad.mit.edu	37	chr16	30495320	30495320	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcatcatatcttccctctCctctttctgaaccccaagcc	3	18	5	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30495320	A	A	30495320	1	1	151	0	1	0	0	0	0	0	0	0	7956	870	30	3		3	ITGAL	16	30495320	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3002958	30495320	59859433	1276	130763											
ITGAL	3683	broad.mit.edu	37	chr16	30532894	30532894	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatccctgcagaagactctGagcagctggcatctgggcaa	12	11	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30532894	A	A	30532894	3	1	151	1	0	0	0	0	1	0	0	0	7956	1291	45	4	3543	4	ITGAL	16	30532894	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	37574	30532894	59821859	1277	130764											
SRCAP	10847	broad.mit.edu	37	chr16	30723100	30723101	+	Intron	DNP	GG	TT	TT													atgaagcaggagctggggagGgtggccattggaagagcagg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30723101	TT	TT	30723100	1	4	151	0	1	0	0	0	0	0	0	0	15253	1247	43	2		2	SRCAP	16	30723100	Intron	DNP	GG	TCGA-50-5049-01A-01D-1625-08	190206	30723100	59631653	1278	130765											
SRCAP	10847	broad.mit.edu	37	chr16	30750714	30750714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactaaccccaaaactgcGctcgacccggctgcgtccag	8	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30750714	T	T	30750714	3	4	151	1	0	0	0	0	1	0	0	0	15253	1087	38	3	9479	3	SRCAP	16	30750714	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	27614	30750714	59604039	1279	130766											
ORAI3	93129	broad.mit.edu	37	chr16	30964748	30964748	+	Frame_Shift_Del	DEL	G	-	-													tggggcttctccactgccctGggcacctttctcttccttgc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30964748	-	-	30964748	7	5	151	1	0	1	0	1	0	0	0	0	11353	1335	47	0	477	0	ORAI3	16	30964748	Frame_Shift_Del	DEL	G	TCGA-50-5049-01A-01D-1625-08	214034	30964748	59390005	1280	130767											
ITGAM	3684	broad.mit.edu	37	chr16	31308933	31308933	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccccccattactacgagcaGacccgagggggccaggtgtc	13	15	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31308933	T	T	31308933	3	4	151	1	0	0	0	0	1	0	0	0	7957	933	33	3	1505	3	ITGAM	16	31308933	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	344185	31308933	59045820	1281	130768											
ITGAX	3687	broad.mit.edu	37	chr16	31383914	31383914	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accccccgttgccttcccacGcagctaccctttgagaagaa	7	17	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31383914	C	C	31383914	1	2	151	0	1	0	0	0	0	0	0	0	7959	1102	38	4		4	ITGAX	16	31383914	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	74981	31383914	58970839	1282	130769											
ITGAD	3681	broad.mit.edu	37	chr16	31409184	31409185	+	Missense_Mutation	DNP	GG	TT	TT													aagggttcctgcctcctgctGggctcgcgctgggagatcat							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31409185	TT	TT	31409184	3	4	151	1	0	0	0	0	1	0	0	0	7954	1335	47	2	399	2	ITGAD	16	31409184	Missense_Mutation	DNP	GG	TCGA-50-5049-01A-01D-1625-08	25270	31409184	58945569	1283	130770											
NETO2	81831	broad.mit.edu	37	chr16	47162481	47162481	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actctattctttgacgtggaGcagctagaaaataagagtaa	9	6	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47162481	C	C	47162481	3	2	151	1	0	0	0	0	1	0	0	0	10435	971	34	4	1365	4	NETO2	16	47162481	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	15753297	47162481	43192272	1284	130771											
N4BP1	9683	broad.mit.edu	37	chr16	48585318	48585318	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtcatcatgagaagcaattCtttctccaaagaccatccgg	7	11	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48585318	A	A	48585318	3	1	151	1	0	0	0	0	1	0	0	0	10203	913	32	3	610	3	N4BP1	16	48585318	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1422837	48585318	41769435	1285	130772											
ADCY7	113	broad.mit.edu	37	chr16	50326809	50326809	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgttggacatgagacactCatgctgccatgtgcatgagg	12	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50326809	T	T	50326809	1	4	151	0	1	0	0	0	0	0	0	0	299	841	29	4		4	ADCY7	16	50326809	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1741491	50326809	40027944	1286	130773											
CETP	1071	broad.mit.edu	37	chr16	57015098	57015098	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactaccgtccaggcctcctAttctaagaaaaagctcttct	6	13	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57015098	T	T	57015098	3	4	151	1	0	0	0	0	1	0	0	0	3307	449	16	5	1221	5	CETP	16	57015098	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	6688289	57015098	33339655	1287	130774											
GOT2	2806	broad.mit.edu	37	chr16	58756164	58756164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttgtccaaattttttgCggcaatctgggcctctgcct	8	12	2	0	rs137905758	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58756164	A	A	58756164	3	1	151	1	0	0	0	0	1	0	0	0	6645	768	27	3	1059	3	GOT2	16	58756164	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1741066	58756164	31598589	1288	130775											
CDH11	1009	broad.mit.edu	37	chr16	64981755	64981755	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaagtcatcgacatccacGctgttgggcgctggccggag	14	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64981755	C	C	64981755	3	2	151	1	0	0	0	0	1	0	0	0	3127	1078	38	4	252	4	CDH11	16	64981755	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6225591	64981755	25372998	1289	130776											
EDC4	23644	broad.mit.edu	37	chr16	67917734	67917734	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctgcctgaatcctctccCtaattttctccaccagtcct	3	17	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67917734	T	T	67917734	1	4	151	0	1	0	0	0	0	0	0	0	4948	696	24	4		4	EDC4	16	67917734	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2935979	67917734	22437019	1290	130777											
ZFP90	146198	broad.mit.edu	37	chr16	68598507	68598507	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagagaattcatactggagAaaaaccctattcttgtaagg	8	7	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68598507	G	G	68598507	3	3	151	1	0	0	0	0	1	0	0	0	17780	246	9	5	1831	5	ZFP90	16	68598507	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	680773	68598507	21756246	1291	130778											
AARS	16	broad.mit.edu	37	chr16	70299344	70299344	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaggggaaaaagcacttcAaagactttaatggaaggaaa	10	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70299344	C	C	70299344	1	2	151	0	1	0	0	0	0	0	0	0	19	145	5	5		5	AARS	16	70299344	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1700837	70299344	20055409	1292	130779											
HYDIN	54768	broad.mit.edu	37	chr16	71149585	71149585	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taacctgagtttaccacttgGaggaggtcactacctaaaat	8	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71149585	C	C	71149585	1	2	151	0	1	0	0	0	0	0	0	0	7537	1189	41	4		4	HYDIN	16	71149585	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	850241	71149585	19205168	1293	130780											
AP1G1	164	broad.mit.edu	37	chr16	71779543	71779543	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatctgaagtggttaaatTctaggcagttaacctagatt	9	5	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71779543	A	A	71779543	1	1	151	0	1	0	0	0	0	0	0	0	734	1798	62	5		5	AP1G1	16	71779543	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	629958	71779543	18575210	1294	130781											
KIAA0174	9798	broad.mit.edu	37	chr16	71954700	71954700	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaagctatgtaggaccaAccagattggaactgtgaatg	12	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71954700	T	T	71954700	3	4	151	1	0	0	0	0	1	0	0	0	8228	43	2	5	430	5	KIAA0174	16	71954700	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	175157	71954700	18400053	1295	130782											
ADAMTS18	170692	broad.mit.edu	37	chr16	77396106	77396106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaatgagggcagactgcCattgacaaaaactattcaga	8	9	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77396106	A	A	77396106	3	1	151	1	0	0	0	0	1	0	0	0	263	595	21	2	2621	2	ADAMTS18	16	77396106	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5441406	77396106	12958647	1296	130783											
PKD1L2	114780	broad.mit.edu	37	chr16	81181756	81181756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacctgccttggtcactgCctcaggtgtcagaaggccgt	13	12	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81181756	A	A	81181756	3	1	151	1	0	0	0	0	1	0	0	0	12060	739	26	3	2478	3	PKD1L2	16	81181756	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3785650	81181756	9172997	1297	130784											
PLCG2	5336	broad.mit.edu	37	chr16	81929597	81929597	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctagggttggatagacagAtggacagacaggcaaacaca	13	7	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81929597	G	G	81929597	1	3	151	0	1	0	0	0	0	0	0	0	12131	348	12	5		5	PLCG2	16	81929597	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	747841	81929597	8425156	1298	130785											
CRISPLD2	83716	broad.mit.edu	37	chr16	84907567	84907567	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcatggtgtcaaaagtgaAaggtaagctagccagtctct	10	7	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84907567	T	T	84907567	3	4	151	1	0	0	0	0	1	0	0	0	3915	14	1	5	1192	5	CRISPLD2	16	84907567	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	2977970	84907567	5447186	1299	130786											
ZNF778	197320	broad.mit.edu	37	chr16	89294046	89294046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggcgagaagccatacacGtgtaaggactgcgggaaagc	15	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89294046	T	T	89294046	2	4	151	1	0	0	0	0	0	0	0	1	18280	1132	40	3		3	ZNF778	16	89294046	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	4386479	89294046	1060707	1300	130787											
METT10D	79066	broad.mit.edu	37	chr17	2367656	2367656	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttactccctgaaaaacaaCaaaaaaccctggtgaaaaat	5	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2367656	G	G	2367656	1	3	151	0	1	0	0	0	0	0	0	0	9583	493	17	4		4	METT10D	17	2367656	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08		2367656	78827554	1301	130788											
SPATA22	84690	broad.mit.edu	37	chr17	3397779	3397779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgttctttctttaaaatGttgaaaataataatgctgta	5	3	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3397779	A	A	3397779	1	1	151	0	1	0	0	0	0	0	0	0	15124	1392	48	4		4	SPATA22	17	3397779	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1030123	3397779	77797431	1302	130789											
ITGAE	3682	broad.mit.edu	37	chr17	3656700	3656700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgtccacagggcacaGctcagagccaaaataggacc	10	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3656700	T	T	3656700	3	4	151	1	0	0	0	0	1	0	0	0	7955	962	34	3	2059	3	ITGAE	17	3656700	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	258921	3656700	77538510	1303	130790											
ATP2A3	489	broad.mit.edu	37	chr17	3839652	3839652	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgatgtccaggtctggCgggttgaagcccagagccgt	14	11	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3839652	A	A	3839652	2	1	151	1	0	0	0	0	0	0	0	1	1142	755	27	3		3	ATP2A3	17	3839652	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	182952	3839652	77355558	1304	130791											
ASGR2	433	broad.mit.edu	37	chr17	7004962	7004962	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtacacctgcaggcagaagtCatcgttccagcggccatccg	11	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7004962	A	A	7004962	3	1	151	1	0	0	0	0	1	0	0	0	1044	826	29	3	71	3	ASGR2	17	7004962	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	3165310	7004962	74190248	1305	130792											
ASGR2	433	broad.mit.edu	37	chr17	7005368	7005368	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggccagggggctgtcccCagagaaatctaacaaggaga	13	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7005368	A	A	7005368	1	1	151	0	1	0	0	0	0	0	0	0	1044	609	21	2		2	ASGR2	17	7005368	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	406	7005368	74189842	1306	130793											
CHRNB1	1140	broad.mit.edu	37	chr17	7350393	7350393	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttgacgtggctctggacAttagcgtcgtggtgtcctcc	12	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7350393	G	G	7350393	3	3	151	1	0	0	0	0	1	0	0	0	3421	217	8	5	403	5	CHRNB1	17	7350393	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	345025	7350393	73844817	1307	130794											
TP53	7157	broad.mit.edu	37	chr17	7577046	7577046	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgctccctgggggcagctCgtggtgaggctcccctttct	14	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577046	A	A	7577046	4	1	151	1	0	0	0	0	0	1	0	0	16505	893	31	3	394	3	TP53	17	7577046	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	226653	7577046	73618164	1308	130795											
DNAH2	146754	broad.mit.edu	37	chr17	7720823	7720823	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagagataccgtgaaggcgCgggggctgctgggctcagct	17	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7720823	G	G	7720823	1	3	151	0	1	0	0	0	0	0	0	0	4642	783	27	4		4	DNAH2	17	7720823	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	143777	7720823	73474387	1309	130796											
PER1	5187	broad.mit.edu	37	chr17	8051528	8051528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcctggaagaggcagctGggtgtgtgccgcgtagtgaa	16	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8051528	T	T	8051528	2	4	151	1	0	0	0	0	0	0	0	1	11823	1335	47	2		2	PER1	17	8051528	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	330705	8051528	73143682	1310	130797											
MYH2	4620	broad.mit.edu	37	chr17	10433048	10433048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgccatctcttctgtgaGgtttttcacctacaaaggtg	8	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10433048	T	T	10433048	3	4	151	1	0	0	0	0	1	0	0	0	10129	1000	35	2	2943	2	MYH2	17	10433048	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2381520	10433048	70762162	1311	130798											
DNAH9	1770	broad.mit.edu	37	chr17	11593206	11593206	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcagggcctgggatgcatTcacaggcctggaaagcactg	15	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11593206	A	A	11593206	3	1	151	1	0	0	0	0	1	0	0	0	4648	1783	62	5	4145	5	DNAH9	17	11593206	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1160158	11593206	69602004	1312	130799											
DNAH9	1770	broad.mit.edu	37	chr17	11593507	11593507	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtatgagccccacccacgGaccaatgtccccctcctgtg	8	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11593507	A	A	11593507	2	1	151	1	0	0	0	0	0	0	0	1	4648	1161	41	4		4	DNAH9	17	11593507	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	301	11593507	69601703	1313	130800											
DNAH9	1770	broad.mit.edu	37	chr17	11684316	11684316	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttccctcaccgactggctCtctccccagctgtcctggag	8	19	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11684316	G	G	11684316	1	3	151	0	1	0	0	0	0	0	0	0	4648	928	32	4		4	DNAH9	17	11684316	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	90809	11684316	69510894	1314	130801											
MYOCD	93649	broad.mit.edu	37	chr17	12655670	12655670	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgaagctaattgtataatGaatacacttttaaaaatatt	4	3	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12655670	C	C	12655670	1	2	151	0	1	0	0	0	0	0	0	0	10181	1305	45	4		4	MYOCD	17	12655670	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	971354	12655670	68539540	1315	130802											
ZNF286B	729288	broad.mit.edu	37	chr17	18580564	18580564	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataaaacaagtctacttgTatgtatacaaggtctgttcc	7	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18580564	G	G	18580564	1	3	151	0	1	0	0	0	0	0	0	0	17950	1653	57	5		5	ZNF286B	17	18580564	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	5924894	18580564	62614646	1316	130803											
FBXW10	10517	broad.mit.edu	37	chr17	18682089	18682090	+	Frame_Shift_Del	DEL	GA	-	-													agcaatcctcctatagatgtGaaacgaaccagtattcccct							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18682090	-	-	18682089	7	5	151	1	0	1	0	1	0	0	0	0	5820	1277	45	0	2688	0	FBXW10	17	18682089	Frame_Shift_Del	DEL	GA	TCGA-50-5049-01A-01D-1625-08	101525	18682089	62513121	1317	130804											
PRPSAP2	5636	broad.mit.edu	37	chr17	18781224	18781224	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaattaattgggggcctggGagttttatttatttattctc	9	5	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18781224	T	T	18781224	1	4	151	0	1	0	0	0	0	0	0	0	12688	1189	41	3		3	PRPSAP2	17	18781224	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	99135	18781224	62413986	1318	130805											
SLC5A10	125206	broad.mit.edu	37	chr17	18922899	18922899	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttctggcgacgtgccaacGagcaggtgggcgtcggcggt	17	11	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18922899	C	C	18922899	3	2	151	1	0	0	0	0	1	0	0	0	14776	1059	37	4	1499	4	SLC5A10	17	18922899	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	141675	18922899	62272311	1319	130806											
SLC47A1	55244	broad.mit.edu	37	chr17	19451487	19451487	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggacttggcgtccatccCacggaaagattatcctgtct	11	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19451487	A	A	19451487	1	1	151	0	1	0	0	0	0	0	0	0	14761	609	21	2		2	SLC47A1	17	19451487	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	528588	19451487	61743723	1320	130807											
MAP2K3	5606	broad.mit.edu	37	chr17	21208481	21208481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccttggtggtcaggtgGggtgggtggagccgtgcctg	20	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21208481	T	T	21208481	1	4	151	0	1	0	0	0	0	0	0	0	9330	1247	43	2		2	MAP2K3	17	21208481	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1756994	21208481	59986729	1321	130808											
NUFIP2	57532	broad.mit.edu	37	chr17	27613955	27613955	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcataacttattttaggaaCtattttagcactgctattgt	6	6	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27613955	G	G	27613955	3	3	151	1	0	0	0	0	1	0	0	0	10844	565	20	4	1042	4	NUFIP2	17	27613955	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	6405474	27613955	53581255	1322	130809											
CCL8	6355	broad.mit.edu	37	chr17	32647250	32647250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaatgcacacttacggtgGgtcctaaatgtctcattctt	7	10	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32647250	T	T	32647250	1	4	151	0	1	0	0	0	0	0	0	0	2937	1247	43	2		2	CCL8	17	32647250	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	5033295	32647250	48547960	1323	130810											
TMEM132E	124842	broad.mit.edu	37	chr17	32959728	32959728	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccttcccccaggtatcCagcagctgtgactacgtgtt	8	16	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32959728	T	T	32959728	2	4	151	1	0	0	0	0	0	0	0	1	16171	581	21	4		4	TMEM132E	17	32959728	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	312478	32959728	48235482	1324	130811											
PEX12	5193	broad.mit.edu	37	chr17	33904001	33904001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaattttacaaaactgGgatacgattttcgaatttac	8	5	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33904001	T	T	33904001	1	4	151	0	1	0	0	0	0	0	0	0	11835	1247	43	2		2	PEX12	17	33904001	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	944273	33904001	47291209	1325	130812											
FBXL20	84961	broad.mit.edu	37	chr17	37437684	37437684	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccagttcagggcagtgTgcacctatgtacttgagagc	12	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37437684	A	A	37437684	2	1	151	1	0	0	0	0	0	0	0	1	5774	1683	59	5		5	FBXL20	17	37437684	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	3533683	37437684	43757526	1326	130813											
GRB7	2886	broad.mit.edu	37	chr17	37900435	37900435	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcgccgatctggcctctAttactccaccaagggcacct	8	16	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37900435	G	G	37900435	3	3	151	1	0	0	0	0	1	0	0	0	6825	449	16	5	798	5	GRB7	17	37900435	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	462751	37900435	43294775	1327	130814											
MED24	9862	broad.mit.edu	37	chr17	38183255	38183255	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggtctcgaagaagggcacCtcagctcctgtgcgcgactc	12	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38183255	G	G	38183255	3	3	151	1	0	0	0	0	1	0	0	0	9535	680	24	4	1446	4	MED24	17	38183255	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	282820	38183255	43011955	1328	130815											
KRT28	162605	broad.mit.edu	37	chr17	38953536	38953536	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagccttcatctcctGgagagaagcaagagtgtggc	13	10	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38953536	T	T	38953536	1	4	151	0	1	0	0	0	0	0	0	0	8536	1363	47	2		2	KRT28	17	38953536	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	770281	38953536	42241674	1329	130816											
KRTAP4-12	83755	broad.mit.edu	37	chr17	39280335	39280335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagttctccaggccacagcCctggtcagagcacacagagc	11	15	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39280335	A	A	39280335	3	1	151	1	0	0	0	0	1	0	0	0	8622	623	22	2	569	2	KRTAP4-12	17	39280335	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	326799	39280335	41914875	1330	130817											
KRT33B	3884	broad.mit.edu	37	chr17	39521339	39521339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactcacaagctccaagagCtaagaagagtgtgtggcccc	10	11	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39521339	A	A	39521339	1	1	151	0	1	0	0	0	0	0	0	0	8541	812	28	3		3	KRT33B	17	39521339	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	241004	39521339	41673871	1331	130818											
KRT38	8687	broad.mit.edu	37	chr17	39594757	39594757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtaccaaggtgtgctgggCttggcgctccacctccaggg	14	13	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39594757	A	A	39594757	3	1	151	1	0	0	0	0	1	0	0	0	8546	797	28	3	376	3	KRT38	17	39594757	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	73418	39594757	41600453	1332	130819											
GAST	2520	broad.mit.edu	37	chr17	39871799	39871799	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcacccttaggtacaggGgccaacagggacctggagct	14	11	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39871799	T	T	39871799	2	4	151	1	0	0	0	0	0	0	0	1	6314	1219	43	2		2	GAST	17	39871799	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	277042	39871799	41323411	1333	130820											
NT5C3L	115024	broad.mit.edu	37	chr17	39985171	39985171	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggggaatgttgttatgGtagagtgtgttgaagaaggt	16	0	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39985171	A	A	39985171	2	1	151	1	0	0	0	0	0	0	0	1	10784	1256	44	4		4	NT5C3L	17	39985171	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	113372	39985171	41210039	1334	130821											
CD300LG	146894	broad.mit.edu	37	chr17	41925910	41925910	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtttttccaacctccactCctgctctgattttaggttat	6	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41925910	A	A	41925910	1	1	151	0	1	0	0	0	0	0	0	0	3032	870	30	3		3	CD300LG	17	41925910	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1940739	41925910	39269300	1335	130822											
PYY	5697	broad.mit.edu	37	chr17	42030614	42030614	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacgcccccaggtggagcGgggccgcagggtgagagccc	18	15	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42030614	A	A	42030614	1	1	151	0	1	0	0	0	0	0	0	0	12976	1131	39	4		4	PYY	17	42030614	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	104704	42030614	39164596	1336	130823											
ASB16	92591	broad.mit.edu	37	chr17	42248402	42248402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgttccaagatgaagaggCcgccaacatgattgtggaga	12	9	0	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42248402	A	A	42248402	3	1	151	1	0	0	0	0	1	0	0	0	1024	739	26	3	247	3	ASB16	17	42248402	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	217788	42248402	38946808	1337	130824											
ITGA2B	3674	broad.mit.edu	37	chr17	42457994	42457994	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagccacctggttggccccGtaagctcccacgatcaggtc	10	16	1	0	rs78218617		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42457994	T	T	42457994	4	4	151	1	0	0	0	0	0	1	0	0	7946	1140	40	3	1774	3	ITGA2B	17	42457994	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	209592	42457994	38737216	1338	130825											
ITGA2B	3674	broad.mit.edu	37	chr17	42461732	42461732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgacatattctggcgataGggagagccaggctcagggaa	15	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42461732	T	T	42461732	1	4	151	0	1	0	0	0	0	0	0	0	7946	1015	35	2		2	ITGA2B	17	42461732	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3738	42461732	38733478	1339	130826											
GPATCH8	23131	broad.mit.edu	37	chr17	42477491	42477491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcttctgtctcagaccCatggctacccccaggctcct	8	16	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42477491	A	A	42477491	3	1	151	1	0	0	0	0	1	0	0	0	6659	594	21	2	2558	2	GPATCH8	17	42477491	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	15759	42477491	38717719	1340	130827											
CRHR1	1394	broad.mit.edu	37	chr17	43898625	43898626	+	Intron	DNP	CC	AT	AT													ccagcaggtgcctgtactggCcatctacagatccatctacg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43898626	AT	AT	43898625	1	1	151	0	1	0	0	0	0	0	0	0	3903	754	26	3		3	CRHR1	17	43898625	Intron	DNP	CC	TCGA-50-5049-01A-01D-1625-08	1421134	43898625	37296585	1341	130828											
WNT9B	7484	broad.mit.edu	37	chr17	44953934	44953934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagggtgtgctcccgggaGgccagctgcagcagcctgtg	18	11	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44953934	T	T	44953934	3	4	151	1	0	0	0	0	1	0	0	0	17526	991	35	2	938	2	WNT9B	17	44953934	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1055309	44953934	36241276	1342	130829											
MYL4	4635	broad.mit.edu	37	chr17	45299181	45299181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaggagagcaatggcacGgtcatgggtgctgagcttcg	16	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45299181	T	T	45299181	2	4	151	1	0	0	0	0	0	0	0	1	10143	1103	39	1		1	MYL4	17	45299181	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	345247	45299181	35896029	1343	130830											
SGCA	6442	broad.mit.edu	37	chr17	48245272	48245272	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtgccacgtttctcccCtaacccacttctcagatgtc	6	17	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48245272	G	G	48245272	1	3	151	0	1	0	0	0	0	0	0	0	14312	696	24	4		4	SGCA	17	48245272	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2946091	48245272	32949938	1344	130831											
TMEM100	55273	broad.mit.edu	37	chr17	53798315	53798315	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtagcagccatcaactgaatCtcactgaccagagggactgt	10	11	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53798315	A	A	53798315	3	1	151	1	0	0	0	0	1	0	0	0	16138	912	32	3	291	3	TMEM100	17	53798315	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5553043	53798315	27396895	1345	130832											
TRIM25	7706	broad.mit.edu	37	chr17	54969240	54969240	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccacccgcgtggccttggTggagggcagggttttctcca	15	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54969240	G	G	54969240	3	3	151	1	0	0	0	0	1	0	0	0	16623	1696	59	5	182	5	TRIM25	17	54969240	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1170925	54969240	26225970	1346	130833											
OR4D2	124538	broad.mit.edu	37	chr17	56247135	56247135	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctacatcaccactgttaTgggaaacatccttatcatca	5	11	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56247135	C	C	56247135	3	2	151	1	0	0	0	0	1	0	0	0	11150	1464	51	5	121	5	OR4D2	17	56247135	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1277895	56247135	24948075	1347	130834											
BZRAP1	9256	broad.mit.edu	37	chr17	56386312	56386312	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgtggggcccagtcgtcCagaggcctggggcccattgt	16	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56386312	A	A	56386312	4	1	151	1	0	0	0	0	0	1	0	0	1587	603	21	2	1292	2	BZRAP1	17	56386312	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	139177	56386312	24808898	1348	130835											
BZRAP1	9256	broad.mit.edu	37	chr17	56386537	56386537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accactgtcacagcccagccCcagcaatgcaggttcaggcg	10	16	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56386537	A	A	56386537	3	1	151	1	0	0	0	0	1	0	0	0	1587	623	22	2	1517	2	BZRAP1	17	56386537	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	225	56386537	24808673	1349	130836											
TRIM37	4591	broad.mit.edu	37	chr17	57128705	57128705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccttaaaagaattgtgCcacattaaaaaaaaaattca	4	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57128705	A	A	57128705	1	1	151	0	1	0	0	0	0	0	0	0	16635	754	26	3		3	TRIM37	17	57128705	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	742168	57128705	24066505	1350	130837											
CLTC	1213	broad.mit.edu	37	chr17	57725719	57725719	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaggaaatgcagaagaatCaacgttattttgttttgcag	11	4	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57725719	A	A	57725719	4	1	151	1	0	0	0	0	0	1	0	0	3598	838	29	3	652	3	CLTC	17	57725719	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	597014	57725719	23469491	1351	130838											
CSHL1	1444	broad.mit.edu	37	chr17	61987904	61987904	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatataggcttcttcctagGggaaggaccccccaccaaga	10	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61987904	C	C	61987904	1	2	151	0	1	0	0	0	0	0	0	0	3976	1247	43	4		4	CSHL1	17	61987904	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	4262185	61987904	19207306	1352	130839											
GH1	2688	broad.mit.edu	37	chr17	61995747	61995747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagctggtgcagacgatGggcgcggagcatagcgttgt	18	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61995747	T	T	61995747	3	4	151	1	0	0	0	0	1	0	0	0	6431	1348	47	2	539	2	GH1	17	61995747	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	7843	61995747	19199463	1353	130840											
SCN4A	6329	broad.mit.edu	37	chr17	62020273	62020273	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggcgagcatcttgagcaCgcactcccctgtgaagatga	12	12	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62020273	T	T	62020273	3	4	151	1	0	0	0	0	1	0	0	0	14033	536	19	4	1317	4	SCN4A	17	62020273	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	24526	62020273	19174937	1354	130841											
SCN4A	6329	broad.mit.edu	37	chr17	62022924	62022924	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acacccatgatgctgaagatCagccagaagatgaggcagac	11	10	1	7			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62022924	A	A	62022924	2	1	151	1	0	0	0	0	0	0	0	1	14033	813	29	3		3	SCN4A	17	62022924	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	2651	62022924	19172286	1355	130842											
SCN4A	6329	broad.mit.edu	37	chr17	62023011	62023011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaccacctgggggccaggGggtccattgccagtgcctct	13	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62023011	T	T	62023011	1	4	151	0	1	0	0	0	0	0	0	0	14033	1247	43	2		2	SCN4A	17	62023011	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	87	62023011	19172199	1356	130843											
SCN4A	6329	broad.mit.edu	37	chr17	62043670	62043670	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgggggcagatagggacCccaagggaaaaattccgtca	14	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62043670	T	T	62043670	1	4	151	0	1	0	0	0	0	0	0	0	14033	638	22	4		4	SCN4A	17	62043670	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	20659	62043670	19151540	1357	130844											
LRRC37A3	374819	broad.mit.edu	37	chr17	62850636	62850636	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggatgtgtgggccgctGgcttcagtcctgcttttttg	14	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62850636	A	A	62850636	1	1	151	0	1	0	0	0	0	0	0	0	9080	1363	47	4		4	LRRC37A3	17	62850636	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	806966	62850636	18344574	1358	130845											
SLC16A6	9120	broad.mit.edu	37	chr17	66265122	66265122	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatacacattccctttaaAatgtagttttgaaagtggag	7	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66265122	T	T	66265122	1	4	151	0	1	0	0	0	0	0	0	0	14525	29	1	5		5	SLC16A6	17	66265122	3'UTR	SNP	A	TCGA-50-5049-01A-01D-1625-08	3414486	66265122	14930088	1359	130846											
ABCA10	10349	broad.mit.edu	37	chr17	67161197	67161198	+	Missense_Mutation	DNP	CC	AT	AT													tttttcatattgagttgataCcataattgtggatacacata							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	67161198	AT	AT	67161197	3	1	151	1	0	0	0	0	1	0	0	0	29	507	18	3	1497	3	ABCA10	17	67161197	Missense_Mutation	DNP	CC	TCGA-50-5049-01A-01D-1625-08	896075	67161197	14034013	1360	130847											
ABCA5	23461	broad.mit.edu	37	chr17	67249889	67249889	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacaatatcaggtactaaActatcaataaaaatacaggc	5	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67249889	C	C	67249889	1	2	151	0	1	0	0	0	0	0	0	0	35	58	2	5		5	ABCA5	17	67249889	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	88692	67249889	13945321	1361	130848											
KCNJ16	3773	broad.mit.edu	37	chr17	68128795	68128795	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtttcagctactttgcactTataggtatgagagatgggaa	11	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68128795	G	G	68128795	2	3	151	1	0	0	0	0	0	0	0	1	8120	1741	61	5		5	KCNJ16	17	68128795	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	878906	68128795	13066415	1362	130849											
KIF19	124602	broad.mit.edu	37	chr17	72322435	72322435	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgacccggaggcggtgggggTgcggctgagccatgcccggt	20	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72322435	A	A	72322435	1	1	151	0	1	0	0	0	0	0	0	0	8352	1711	59	5		5	KIF19	17	72322435	5'UTR	SNP	T	TCGA-50-5049-01A-01D-1625-08	4193640	72322435	8872775	1363	130850											
GPR142	350383	broad.mit.edu	37	chr17	72368146	72368146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtgccaccccctgcacCatcgggccgcctcgtcccca	8	23	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72368146	A	A	72368146	3	1	151	1	0	0	0	0	1	0	0	0	6715	594	21	2	810	2	GPR142	17	72368146	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	45711	72368146	8827064	1364	130851											
TSEN54	283989	broad.mit.edu	37	chr17	73513546	73513546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgcgctgctgagagggGgagggggaggtatcagagct	20	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73513546	T	T	73513546	1	4	151	0	1	0	0	0	0	0	0	0	16739	1247	43	2		2	TSEN54	17	73513546	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1145400	73513546	7681664	1365	130852											
LLGL2	3993	broad.mit.edu	37	chr17	73552068	73552068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgctgcagctgcagcaGccatggtggcgcgaagggga	18	10	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73552068	T	T	73552068	1	4	151	0	1	0	0	0	0	0	0	0	8908	986	34	3		3	LLGL2	17	73552068	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	38522	73552068	7643142	1366	130853											
SRP68	6730	broad.mit.edu	37	chr17	74066576	74066576	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcaagaatccaaacaaatCaaaacctgtaccatcagtct	4	11	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74066576	T	T	74066576	1	4	151	0	1	0	0	0	0	0	0	0	15274	841	29	4		4	SRP68	17	74066576	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	514508	74066576	7128634	1367	130854											
GALR2	8811	broad.mit.edu	37	chr17	74071323	74071323	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcacgctggccgccgtctCcctggacaggtgagccagcg	13	16	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74071323	A	A	74071323	3	1	151	1	0	0	0	0	1	0	0	0	6290	855	30	3	361	3	GALR2	17	74071323	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4747	74071323	7123887	1368	130855											
ZACN	353174	broad.mit.edu	37	chr17	74077485	74077485	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctgcttccaggtgacggTgagtcaagtcgggaggaggc	17	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74077485	A	A	74077485	5	1	151	1	0	0	0	0	0	0	1	0	17637	1710	59	5	693	5	ZACN	17	74077485	Splice_Site	SNP	T	TCGA-50-5049-01A-01D-1625-08	6162	74077485	7117725	1369	130856											
RNF157	114804	broad.mit.edu	37	chr17	74157643	74157643	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcagagtcagatgtctgGgatgagatgatggggttaaa	14	4	4	4	rs139660847		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74157643	T	T	74157643	2	4	151	1	0	0	0	0	0	0	0	1	13565	1219	43	2		2	RNF157	17	74157643	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	80158	74157643	7037567	1370	130857											
QRICH2	84074	broad.mit.edu	37	chr17	74288492	74288492	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgatccactccaggttgGaccaaaccatgctgatctgc	9	13	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74288492	T	T	74288492	2	4	151	1	0	0	0	0	0	0	0	1	12988	1161	41	3		3	QRICH2	17	74288492	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	130849	74288492	6906718	1371	130858											
TNRC6C	57690	broad.mit.edu	37	chr17	76083231	76083231	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagggtacctggagtccGtatgtggtagccagggcagc	17	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76083231	T	T	76083231	1	4	151	0	1	0	0	0	0	0	0	0	16465	1160	40	3		3	TNRC6C	17	76083231	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1794739	76083231	5111979	1372	130859											
TMC8	147138	broad.mit.edu	37	chr17	76130348	76130348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctatgggagcatgacaGtgtgagagtttgtgactgtg	16	4	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76130348	T	T	76130348	1	4	151	0	1	0	0	0	0	0	0	0	16114	1044	36	3		3	TMC8	17	76130348	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	47117	76130348	5064862	1373	130860											
C1QTNF1	114897	broad.mit.edu	37	chr17	77043860	77043860	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacctctacgaccacttcaAcatgttcaccggcaagttct	6	14	4	0	rs149440649	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77043860	G	G	77043860	3	3	151	1	0	0	0	0	1	0	0	0	1982	43	2	5	546	5	C1QTNF1	17	77043860	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	913512	77043860	4151350	1374	130861											
RPTOR	57521	broad.mit.edu	37	chr17	78796123	78796124	+	Intron	DNP	GG	TT	TT													tgaggcgcgggccgggccttGgggagggaggctatggcctt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	78796124	TT	TT	78796123	1	4	151	0	1	0	0	0	0	0	0	0	13776	1363	47	2		2	RPTOR	17	78796123	Intron	DNP	GG	TCGA-50-5049-01A-01D-1625-08	1752263	78796123	2399087	1375	130862											
P4HB	5034	broad.mit.edu	37	chr17	79803679	79803679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactggcagacgcttcccCaggagtctgcctaccttgcg	11	16	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79803679	A	A	79803679	1	1	151	0	1	0	0	0	0	0	0	0	11453	609	21	2		2	P4HB	17	79803679	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1007556	79803679	1391531	1376	130863											
MYOM1	8736	broad.mit.edu	37	chr18	3187492	3187492	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acataccacgtgacacgaggTtctggccagcctgctatgga	11	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3187492	A	A	3187492	3	1	151	1	0	0	0	0	1	0	0	0	10185	1722	60	5	4278	5	MYOM1	18	3187492	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08		3187492	74889756	1377	130864											
MYL12B	103910	broad.mit.edu	37	chr18	3277950	3277950	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactgaaagaactttagctaAaatcttccagttacattgtc	6	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3277950	T	T	3277950	1	4	151	0	1	0	0	0	0	0	0	0	10140	29	1	5		5	MYL12B	18	3277950	3'UTR	SNP	A	TCGA-50-5049-01A-01D-1625-08	90458	3277950	74799298	1378	130865											
DLGAP1	9229	broad.mit.edu	37	chr18	3534574	3534574	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtccaggtcggcctgtacTgctgtcgtcacactgttgga	12	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3534574	A	A	3534574	2	1	151	1	0	0	0	0	0	0	0	1	4599	1567	55	5		5	DLGAP1	18	3534574	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	256624	3534574	74542674	1379	130866											
ZNF521	25925	broad.mit.edu	37	chr18	22669505	22669505	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcttcttgtccatgggcaGagaaaatatgctgctgcaac	10	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22669505	T	T	22669505	3	4	151	1	0	0	0	0	1	0	0	0	18092	942	33	3	113	3	ZNF521	18	22669505	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	19134931	22669505	55407743	1380	130867											
TAF4B	6875	broad.mit.edu	37	chr18	23836000	23836000	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattccttctgcagtttactGatatggttgctctttatctt	6	8	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23836000	C	C	23836000	1	2	151	0	1	0	0	0	0	0	0	0	15646	1305	45	4		4	TAF4B	18	23836000	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1166495	23836000	54241248	1381	130868											
DSC3	1825	broad.mit.edu	37	chr18	28586988	28586988	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacagctaaaatgtcggtAtaccccatttttggtttgca	7	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28586988	T	T	28586988	4	4	151	1	0	0	0	0	0	1	0	0	4807	456	16	5	968	5	DSC3	18	28586988	Nonsense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	4750988	28586988	49490260	1382	130869											
DSG4	147409	broad.mit.edu	37	chr18	28983423	28983423	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaccatatgtattgaggttCctgatatcaatgattattgt	8	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28983423	A	A	28983423	3	1	151	1	0	0	0	0	1	0	0	0	4819	855	30	3	1504	3	DSG4	18	28983423	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	396435	28983423	49093825	1383	130870											
DSG2	1829	broad.mit.edu	37	chr18	29125892	29125892	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtcaaaaaatagatataaAtaaggaaattgagcagagac	10	3	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29125892	G	G	29125892	3	3	151	1	0	0	0	0	1	0	0	0	4817	101	4	5	2601	5	DSG2	18	29125892	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	142469	29125892	48951356	1384	130871											
TTR	7276	broad.mit.edu	37	chr18	29175325	29175325	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaatgtcctaaggaagGtgatgaatgaccaaaggttc	11	6	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29175325	T	T	29175325	1	4	151	0	1	0	0	0	0	0	0	0	16864	1276	44	3		3	TTR	18	29175325	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	49433	29175325	48901923	1385	130872											
MEP1B	4225	broad.mit.edu	37	chr18	29790580	29790580	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgcctgcaattttacttaTataacagtggcagtgaaagt	9	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29790580	C	C	29790580	3	2	151	1	0	0	0	0	1	0	0	0	9569	1406	49	5	1074	5	MEP1B	18	29790580	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	615255	29790580	48286668	1386	130873											
DTNA	1837	broad.mit.edu	37	chr18	32431892	32431892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagctagaaaacaagaacaGgtgagactttgtagacgtgc	12	6	0	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32431892	T	T	32431892	3	4	151	1	0	0	0	0	1	0	0	0	4828	1014	35	2	1540	2	DTNA	18	32431892	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2641312	32431892	45645356	1387	130874											
RIT2	6014	broad.mit.edu	37	chr18	40695528	40695528	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaggagaaagtcaccCgtgtcaggtgcttgctcgaa	12	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40695528	A	A	40695528	1	1	151	0	1	0	0	0	0	0	0	0	13498	667	23	1		1	RIT2	18	40695528	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	8263636	40695528	37381720	1388	130875											
RNF165	494470	broad.mit.edu	37	chr18	44027421	44027421	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttccttgcagctctggcAgggtgtcactccaattctac	9	12	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44027421	C	C	44027421	1	2	151	0	1	0	0	0	0	0	0	0	13567	203	7	5		5	RNF165	18	44027421	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	3331893	44027421	34049827	1389	130876											
DCC	1630	broad.mit.edu	37	chr18	50976858	50976858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctgaactccattttcctGtcttttcccagagccgccaa	5	15	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50976858	T	T	50976858	1	4	151	0	1	0	0	0	0	0	0	0	4315	1392	48	3		3	DCC	18	50976858	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	6949437	50976858	27100390	1390	130877											
RAB27B	5874	broad.mit.edu	37	chr18	52555129	52555129	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actagtaagcaaccaaactgGagataagcaattagatcagg	9	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52555129	T	T	52555129	1	4	151	0	1	0	0	0	0	0	0	0	13023	1189	41	3		3	RAB27B	18	52555129	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1578271	52555129	25522119	1391	130878											
TCF4	6925	broad.mit.edu	37	chr18	53131372	53131372	+	Intron	DEL	G	-	-													acttctgtcttctacatctaGggacaagagaaaagttcttt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53131372	-	-	53131372	6	5	151	0	1	1	0	1	0	0	0	0	15817	1015	35	0		0	TCF4	18	53131372	Intron	DEL	G	TCGA-50-5049-01A-01D-1625-08	576243	53131372	24945876	1392	130879											
MALT1	10892	broad.mit.edu	37	chr18	56401714	56401714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaactctgtcacccaggctGgagtgcagaggcgccatcat	11	12	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56401714	T	T	56401714	1	4	151	0	1	0	0	0	0	0	0	0	9294	1363	47	2		2	MALT1	18	56401714	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	3270342	56401714	21675534	1393	130880											
CDH20	28316	broad.mit.edu	37	chr18	59170142	59170142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaatctttaaaaactggaCctgtggttttatttttataa	5	6	1	0	rs79927496	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59170142	A	A	59170142	1	1	151	0	1	0	0	0	0	0	0	0	3136	522	18	3		3	CDH20	18	59170142	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2768428	59170142	18907106	1394	130881											
CDH20	28316	broad.mit.edu	37	chr18	59170497	59170497	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacattcatcatgcaattctCgcataactatttgccttcag	4	11	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59170497	T	T	59170497	1	4	151	0	1	0	0	0	0	0	0	0	3136	899	31	4		4	CDH20	18	59170497	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	355	59170497	18906751	1395	130882											
SERPINB4	6318	broad.mit.edu	37	chr18	61328427	61328427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcgaacatgaacttggtGttggcttcactgagtgaatt	12	6	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61328427	T	T	61328427	3	4	151	1	0	0	0	0	1	0	0	0	14216	1368	48	3		3	SERPINB4	18	61328427	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2157930	61328427	16748821	1396	130883											
ZNF407	55628	broad.mit.edu	37	chr18	72345910	72345911	+	Missense_Mutation	DNP	GG	TT	TT													atgtatttcattctctagatGgagaagttaacagccatctt							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	72345911	TT	TT	72345910	3	4	151	1	0	0	0	0	1	0	0	0	18014	1349	47	2	2937	2	ZNF407	18	72345910	Missense_Mutation	DNP	GG	TCGA-50-5049-01A-01D-1625-08	11017483	72345910	5731338	1397	130884											
TXNL4A	10907	broad.mit.edu	37	chr18	77737634	77737634	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtacatggatcgtataacTcatacattttgttgaagtca	7	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77737634	A	A	77737634	3	1	151	1	0	0	0	0	1	0	0	0	16931	1551	54	5	215	5	TXNL4A	18	77737634	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	5391724	77737634	339614	1398	130885											
ADNP2	22850	broad.mit.edu	37	chr18	77896229	77896229	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccagtttttctgttaagaGaaagctgcctgacggccact	9	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77896229	T	T	77896229	3	4	151	1	0	0	0	0	1	0	0	0	324	942	33	3	2943	3	ADNP2	18	77896229	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	158595	77896229	181019	1399	130886											
ABCA7	10347	broad.mit.edu	37	chr19	1056364	1056364	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggctggcactccatggtGgcctttgtcaaccgagccag	12	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1056364	T	T	1056364	2	4	151	1	0	0	0	0	0	0	0	1	37	1335	47	2		2	ABCA7	19	1056364	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08		1056364	58072619	1400	130887											
SPPL2B	56928	broad.mit.edu	37	chr19	2351683	2351683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacctccagccacagccaGccctgcggccgcgacggggc	14	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2351683	T	T	2351683	1	4	151	0	1	0	0	0	0	0	0	0	15207	986	34	3		3	SPPL2B	19	2351683	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1295319	2351683	56777300	1401	130888											
SHD	56961	broad.mit.edu	37	chr19	4290477	4290477	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgcatctgaagttcgcGcggacccgtgagaaccaggt	12	12	1	2	rs143192359		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4290477	T	T	4290477	2	4	151	1	0	0	0	0	0	0	0	1	14388	1074	38	3		3	SHD	19	4290477	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1938794	4290477	54838506	1402	130889											
FSD1	79187	broad.mit.edu	37	chr19	4310332	4310332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccaccccactaccctgcCcctggtgtgaagacaggggc	10	19	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4310332	A	A	4310332	1	1	151	0	1	0	0	0	0	0	0	0	6130	638	22	2		2	FSD1	19	4310332	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	19855	4310332	54818651	1403	130890											
SEMA6B	10501	broad.mit.edu	37	chr19	4550174	4550174	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagggcgcatggcccagcGagggcaccgcctcgtccatc	13	17	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4550174	T	T	4550174	4	4	151	1	0	0	0	0	0	1	0	0	14153	1059	37	3	1458	3	SEMA6B	19	4550174	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	239842	4550174	54578809	1404	130891											
DUS3L	56931	broad.mit.edu	37	chr19	5787750	5787750	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagaacaggagggtgaGgggagagtccgaactgtccc	18	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5787750	A	A	5787750	1	1	151	0	1	0	0	0	0	0	0	0	4847	1015	35	4		4	DUS3L	19	5787750	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1237576	5787750	53341233	1405	130892											
ACER1	125981	broad.mit.edu	37	chr19	6309595	6309595	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttcaaatcctggccctgcTacttgttagtgggtgatctt	11	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6309595	A	A	6309595	1	1	151	0	1	0	0	0	0	0	0	0	138	1537	53	5		5	ACER1	19	6309595	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	521845	6309595	52819388	1406	130893											
ACER1	125981	broad.mit.edu	37	chr19	6312305	6312305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacatggagaacaggcctgCagcggcaagggcaggcggtc	16	10	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6312305	A	A	6312305	1	1	151	0	1	0	0	0	0	0	0	0	138	725	25	3		3	ACER1	19	6312305	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2710	6312305	52816678	1407	130894											
ALKBH7	84266	broad.mit.edu	37	chr19	6374138	6374138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggaaaccagccccttgcCgttttctgcccctccttgcc	8	17	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6374138	A	A	6374138	1	1	151	0	1	0	0	0	0	0	0	0	532	667	23	1		1	ALKBH7	19	6374138	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	61833	6374138	52754845	1408	130895											
DENND1C	79958	broad.mit.edu	37	chr19	6479631	6479631	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgagtccttggggcccCtgagagatctgagtccctga	14	10	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6479631	T	T	6479631	1	4	151	0	1	0	0	0	0	0	0	0	4468	696	24	4		4	DENND1C	19	6479631	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	105493	6479631	52649352	1409	130896											
C3	718	broad.mit.edu	37	chr19	6693170	6693170	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccagccaatgagcgtgGgggagggaccagggcctggc	17	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6693170	A	A	6693170	1	1	151	0	1	0	0	0	0	0	0	0	2226	1247	43	4		4	C3	19	6693170	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	213539	6693170	52435813	1410	130897											
RETN	56729	broad.mit.edu	37	chr19	7734387	7734387	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagagacctcactgatccCtggcacagacctgactccaa	7	16	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7734387	A	A	7734387	1	1	151	0	1	0	0	0	0	0	0	0	13344	696	24	2		2	RETN	19	7734387	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1041217	7734387	51394596	1411	130898											
CLEC4M	10332	broad.mit.edu	37	chr19	7832409	7832409	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctaccctccagaacttccTacagctgcagacttccagga	6	16	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7832409	A	A	7832409	3	1	151	1	0	0	0	0	1	0	0	0	3550	1522	53	5	987	5	CLEC4M	19	7832409	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	98022	7832409	51296574	1412	130899											
LASS4	79603	broad.mit.edu	37	chr19	8321907	8321907	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctacagtgccaacctgctGcgcattggctctctggtgct	10	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8321907	A	A	8321907	2	1	151	1	0	0	0	0	0	0	0	1	8713	1306	46	4		4	LASS4	19	8321907	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	489498	8321907	50807076	1413	130900											
MYO1F	4542	broad.mit.edu	37	chr19	8619559	8619559	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgccctgatagaggtcgatCtcacggtcggtgaagtaggg	16	9	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8619559	G	G	8619559	3	3	151	1	0	0	0	0	1	0	0	0	10167	912	32	4	3190	4	MYO1F	19	8619559	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	297652	8619559	50509424	1414	130901											
ACTL9	284382	broad.mit.edu	37	chr19	8807769	8807769	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctgtagcagaggctttaCtgcccccacgccctccccag	10	18	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8807769	A	A	8807769	1	1	151	0	1	0	0	0	0	0	0	0	203	580	20	3		3	ACTL9	19	8807769	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	188210	8807769	50321214	1415	130902											
OR7G1	125962	broad.mit.edu	37	chr19	9225719	9225719	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagagaggtgacagccacAggtggaaaacgctttatact	11	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9225719	T	T	9225719	3	4	151	1	0	0	0	0	1	0	0	0	11316	188	7	5	288	5	OR7G1	19	9225719	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	417950	9225719	49903264	1416	130903											
ZNF846	162993	broad.mit.edu	37	chr19	9868262	9868262	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgctccagtgtgagttcgTgtgtgaacgttaaggtatgt	13	5	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9868262	C	C	9868262	2	2	151	1	0	0	0	0	0	0	0	1	18321	1683	59	5		5	ZNF846	19	9868262	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	642543	9868262	49260721	1417	130904											
CDC37	11140	broad.mit.edu	37	chr19	10502118	10502118	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgggccccccaggctgggccGagcagcgcaagtagaggaag	17	13	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10502118	A	A	10502118	1	1	151	0	1	0	0	0	0	0	0	0	3098	1073	37	4		4	CDC37	19	10502118	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	633856	10502118	48626865	1418	130905											
S1PR5	53637	broad.mit.edu	37	chr19	10624666	10624666	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcccccggaagcctcagccGcgctcgccgactgctgggag	15	17	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10624666	C	C	10624666	3	2	151	1	0	0	0	0	1	0	0	0	13908	1087	38	4	178	4	S1PR5	19	10624666	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	122548	10624666	48504317	1419	130906											
TSPAN16	26526	broad.mit.edu	37	chr19	11411906	11411906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggccttggaacacaccttCgtgaccctgaggaagaatta	11	10	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11411906	A	A	11411906	3	1	151	1	0	0	0	0	1	0	0	0	16765	883	31	3	386	3	TSPAN16	19	11411906	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	787240	11411906	47717077	1420	130907											
ZNF440	126070	broad.mit.edu	37	chr19	11943196	11943196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgagtgtaagcaatgtgGgaaagccttcagatctgcct	11	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11943196	T	T	11943196	3	4	151	1	0	0	0	0	1	0	0	0	18040	1232	43	2	1219	2	ZNF440	19	11943196	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	531290	11943196	47185787	1421	130908											
ILVBL	10994	broad.mit.edu	37	chr19	15233752	15233752	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggccctcagggtgggcacAatgtcccgcaccctccgcac	12	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15233752	T	T	15233752	2	4	151	1	0	0	0	0	0	0	0	1	7785	126	5	5		5	ILVBL	19	15233752	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	3290556	15233752	43895231	1422	130909											
NOTCH3	4854	broad.mit.edu	37	chr19	15273348	15273348	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttccacgttgttcacagcCgcagcccagtgtaaggctga	11	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15273348	A	A	15273348	2	1	151	1	0	0	0	0	0	0	0	1	10645	639	23	1		1	NOTCH3	19	15273348	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	39596	15273348	43855635	1423	130910											
NOTCH3	4854	broad.mit.edu	37	chr19	15298035	15298035	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcgcagcgtgtgcccgtgTagccaggagcacaggcacat	13	13	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15298035	C	C	15298035	3	2	151	1	0	0	0	0	1	0	0	0	10645	1638	57	5	5336	5	NOTCH3	19	15298035	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	24687	15298035	43830948	1424	130911											
CYP4F12	66002	broad.mit.edu	37	chr19	15807280	15807280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacccagagaacagcaaggGgaggtcacctctggctttta	12	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15807280	T	T	15807280	3	4	151	1	0	0	0	0	1	0	0	0	4220	1232	43	2	1397	2	CYP4F12	19	15807280	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	509245	15807280	43321703	1425	130912											
CYP4F2	8529	broad.mit.edu	37	chr19	16006296	16006296	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaaatgcactgccccaCcagctgttccagatggtacc	8	16	1	1	rs34226869		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16006296	G	G	16006296	1	3	151	0	1	0	0	0	0	0	0	0	4221	522	18	4		4	CYP4F2	19	16006296	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	199016	16006296	43122687	1426	130913											
USHBP1	83878	broad.mit.edu	37	chr19	17366264	17366264	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccactgctgtttgccccaCcagcctggagctctgcccgt	10	18	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17366264	T	T	17366264	3	4	151	1	0	0	0	0	1	0	0	0	17163	507	18	4	505	4	USHBP1	19	17366264	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1359968	17366264	41762719	1427	130914											
DDA1	79016	broad.mit.edu	37	chr19	17426798	17426799	+	Frame_Shift_Ins	INS	-	A	A													acctgcatcagcaatgggacINSaaaaaggtgaggcccacagg					rs148196076	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17426799	A	A	17426798	7	5	151	1	0	1	1	0	0	0	0	0	4353	477	17	0	206	0	DDA1	19	17426798	Frame_Shift_Ins	INS	-	TCGA-50-5049-01A-01D-1625-08	60534	17426798	41702185	1428	130915											
FAM129C	199786	broad.mit.edu	37	chr19	17653139	17653139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggatgaggccaggctGtgaagacagcctccactgac	15	11	0	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17653139	T	T	17653139	1	4	151	0	1	0	0	0	0	0	0	0	5484	1392	48	3		3	FAM129C	19	17653139	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	226341	17653139	41475844	1429	130916											
FAM129C	199786	broad.mit.edu	37	chr19	17664400	17664400	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctttccacctatttcCctccaaccccaccttccgaa	2	20	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17664400	T	T	17664400	1	4	151	0	1	0	0	0	0	0	0	0	5484	638	22	4		4	FAM129C	19	17664400	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	11261	17664400	41464583	1430	130917											
JAK3	3718	broad.mit.edu	37	chr19	17949121	17949121	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgtcatctgactcagcTggtattgggattggggctga	14	6	3	2	rs140690573		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17949121	C	C	17949121	3	2	151	1	0	0	0	0	1	0	0	0	8009	1580	55	5	1910	5	JAK3	19	17949121	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	284721	17949121	41179862	1431	130918											
RPL18A	6142	broad.mit.edu	37	chr19	17973044	17973044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtgctgtaagctgcctGtcccgcctccagctttttag	9	15	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17973044	T	T	17973044	1	4	151	0	1	0	0	0	0	0	0	0	13676	1392	48	3		3	RPL18A	19	17973044	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	23923	17973044	41155939	1432	130919											
KCNN1	3780	broad.mit.edu	37	chr19	18085084	18085084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggagaccgagctgtcctgGggggtgtacaccaaggtagg	17	9	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18085084	T	T	18085084	3	4	151	1	0	0	0	0	1	0	0	0	8148	1241	43	2	389	2	KCNN1	19	18085084	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	112040	18085084	41043899	1433	130920											
PIK3R2	5296	broad.mit.edu	37	chr19	18273927	18273927	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgccaagctggacacacgGctcctctaccctgtgtccaa	8	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18273927	C	C	18273927	2	2	151	1	0	0	0	0	0	0	0	1	12014	1190	42	4		4	PIK3R2	19	18273927	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	188843	18273927	40855056	1434	130921											
KIAA1683	80726	broad.mit.edu	37	chr19	18368671	18368671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaagtagcttggatgacCatggccccccggtgccacag	12	15	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18368671	A	A	18368671	3	1	151	1	0	0	0	0	1	0	0	0	8321	594	21	2	684	2	KIAA1683	19	18368671	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	94744	18368671	40760312	1435	130922											
HAPLN4	404037	broad.mit.edu	37	chr19	19380641	19380641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatctcagagccccagccaGggcctggagaccaccgtggg	13	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19380641	T	T	19380641	1	4	151	0	1	0	0	0	0	0	0	0	7023	1015	35	2		2	HAPLN4	19	19380641	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1011970	19380641	39748342	1436	130923											
GATAD2A	54815	broad.mit.edu	37	chr19	19606889	19606889	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcattaggcaacattccaGcacagggccaccgcccctcc	8	18	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19606889	C	C	19606889	3	2	151	1	0	0	0	0	1	0	0	0	6322	971	34	4	807	4	GATAD2A	19	19606889	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	226248	19606889	39522094	1437	130924											
ZNF93	81931	broad.mit.edu	37	chr19	20027413	20027413	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcgcccatctggagcaaGgaaaaaaacctttgactatg	9	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20027413	T	T	20027413	4	4	151	1	0	0	0	0	0	1	0	0	18331	1001	35	2	185	2	ZNF93	19	20027413	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	420524	20027413	39101570	1438	130925											
ZNF85	7639	broad.mit.edu	37	chr19	21106280	21106280	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtgggaagcggctgtggcGggactcaggcctccctgtag	18	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21106280	C	C	21106280	1	2	151	0	1	0	0	0	0	0	0	0	18322	1131	39	4		4	ZNF85	19	21106280	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1078867	21106280	38022703	1439	130926											
ZNF85	7639	broad.mit.edu	37	chr19	21131981	21131981	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcaacccttactaaacatAagagaattcatacgggagag	7	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21131981	T	T	21131981	4	4	151	1	0	0	0	0	0	1	0	0	18322	363	13	5	675	5	ZNF85	19	21131981	Nonsense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	25701	21131981	37997002	1440	130927											
ZNF493	284443	broad.mit.edu	37	chr19	21607572	21607572	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaaccttaatacgcataAgataattcatactggagaga	6	8	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21607572	T	T	21607572	3	4	151	1	0	0	0	0	1	0	0	0	18071	72	3	5	2188	5	ZNF493	19	21607572	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	475591	21607572	37521411	1441	130928											
ZNF208	7757	broad.mit.edu	37	chr19	22155210	22155210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttcttatgataactaaGggttgagggccatttatagg	10	4	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22155210	T	T	22155210	3	4	151	1	0	0	0	0	1	0	0	0	17892	1000	35	2	1220	2	ZNF208	19	22155210	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	547638	22155210	36973773	1442	130929											
ZNF208	7757	broad.mit.edu	37	chr19	22157345	22157345	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttccagtatgccttatcTtatgtctgtttgaatttgaa	6	7	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22157345	C	C	22157345	3	2	151	1	0	0	0	0	1	0	0	0	17892	1609	56	5	3355	5	ZNF208	19	22157345	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	2135	22157345	36971638	1443	130930											
ZNF676	163223	broad.mit.edu	37	chr19	22379270	22379270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaggagtccacgacccCttcttccaaatatactcttt	5	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22379270	A	A	22379270	1	1	151	0	1	0	0	0	0	0	0	0	18210	696	24	2		2	ZNF676	19	22379270	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	221925	22379270	36749713	1444	130931											
ZNF492	57615	broad.mit.edu	37	chr19	22847741	22847741	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagaaaccctacaaatgtGaagaatgtggcaaagctttt	10	6	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22847741	A	A	22847741	3	1	151	1	0	0	0	0	1	0	0	0	18070	1291	45	4	1280	4	ZNF492	19	22847741	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	468471	22847741	36281242	1445	130932											
ZNF99	7652	broad.mit.edu	37	chr19	22939803	22939804	+	Frame_Shift_Del	DEL	GA	-	-													tcttatgtttcctaagggctGagaaattgctaaaagctttg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22939804	-	-	22939803	7	5	151	1	0	1	0	1	0	0	0	0	18333	1294	45	0	592	0	ZNF99	19	22939803	Frame_Shift_Del	DEL	GA	TCGA-50-5049-01A-01D-1625-08	92062	22939803	36189180	1446	130933											
ZNF536	9745	broad.mit.edu	37	chr19	30935931	30935931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagggggacaagcactccCtcctgggatgcctcaatctc	12	14	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30935931	A	A	30935931	3	1	151	1	0	0	0	0	1	0	0	0	18101	681	24	2	1464	2	ZNF536	19	30935931	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7996128	30935931	28193052	1447	130934											
TSHZ3	57616	broad.mit.edu	37	chr19	31769270	31769270	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgtcagtgaccgctttctCcttgtcgacttccttcttga	7	14	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31769270	A	A	31769270	4	1	151	1	0	0	0	0	0	1	0	0	16750	864	30	3	1820	3	TSHZ3	19	31769270	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	833339	31769270	27359713	1448	130935											
DPY19L3	147991	broad.mit.edu	37	chr19	32945951	32945951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaacataattaaggtaaGttaataaaaatgacatgttt	5	4	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32945951	T	T	32945951	1	4	151	0	1	0	0	0	0	0	0	0	4782	1044	36	3		3	DPY19L3	19	32945951	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1176681	32945951	26183032	1449	130936											
FFAR2	2867	broad.mit.edu	37	chr19	35941483	35941483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatttgggagagggctgcaGgtgctgcggaatcagggctc	18	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35941483	T	T	35941483	3	4	151	1	0	0	0	0	1	0	0	0	5885	991	35	2	869	2	FFAR2	19	35941483	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2995532	35941483	23187500	1450	130937											
SBSN	374897	broad.mit.edu	37	chr19	36018706	36018706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatttccagcctgccctgCagcattgtcgactccctggc	8	17	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36018706	A	A	36018706	1	1	151	0	1	0	0	0	0	0	0	0	13976	710	25	3		3	SBSN	19	36018706	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	77223	36018706	23110277	1451	130938											
MLL4	9757	broad.mit.edu	37	chr19	36212499	36212499	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaaacccagctcctgccCcaggcactaccgccaccaca	6	20	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36212499	T	T	36212499	2	4	151	1	0	0	0	0	0	0	0	1	9716	610	22	4		4	MLL4	19	36212499	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	193793	36212499	22916484	1452	130939											
MLL4	9757	broad.mit.edu	37	chr19	36227603	36227603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaccaggtgaggcttcgaGctctgaggaagagcctccat	15	10	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36227603	T	T	36227603	3	4	151	1	0	0	0	0	1	0	0	0	9716	971	34	3	7294	3	MLL4	19	36227603	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	15104	36227603	22901380	1453	130940											
NPHS1	4868	broad.mit.edu	37	chr19	36340177	36340177	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaagggattaccccctcgGgccacgcacggcagctccaa	11	16	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36340177	T	T	36340177	2	4	151	1	0	0	0	0	0	0	0	1	10677	1219	43	2		2	NPHS1	19	36340177	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	112574	36340177	22788806	1454	130941											
KIRREL2	84063	broad.mit.edu	37	chr19	36349667	36349667	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctggttgctggagttccTgcgaacctgacatgtcggag	13	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36349667	A	A	36349667	2	1	151	1	0	0	0	0	0	0	0	1	8396	1567	55	5		5	KIRREL2	19	36349667	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	9490	36349667	22779316	1455	130942											
APLP1	333	broad.mit.edu	37	chr19	36363246	36363246	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccagtccagaactacatctCccataatgccaggcagcagc	7	16	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36363246	T	T	36363246	1	4	151	0	1	0	0	0	0	0	0	0	780	870	30	4		4	APLP1	19	36363246	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	13579	36363246	22765737	1456	130943											
APLP1	333	broad.mit.edu	37	chr19	36369812	36369812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatgcgtctgttccaagGggtttccctttccactcatc	9	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36369812	T	T	36369812	3	4	151	1	0	0	0	0	1	0	0	0	780	1223	43	2	1729	2	APLP1	19	36369812	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6566	36369812	22759171	1457	130944											
WDR62	284403	broad.mit.edu	37	chr19	36549665	36549665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgggtgcctctgacttGggctttttctttgcaggtgt	15	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36549665	T	T	36549665	1	4	151	0	1	0	0	0	0	0	0	0	17440	1363	47	2		2	WDR62	19	36549665	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	179853	36549665	22579318	1458	130945											
WDR62	284403	broad.mit.edu	37	chr19	36558728	36558728	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actacgccctctgtgtctccAggtgacgagcacagtgcccc	10	16	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36558728	T	T	36558728	5	4	151	1	0	0	0	0	0	0	1	0	17440	202	7	5	724	5	WDR62	19	36558728	Splice_Site	SNP	A	TCGA-50-5049-01A-01D-1625-08	9063	36558728	22570255	1459	130946											
WDR62	284403	broad.mit.edu	37	chr19	36580044	36580044	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttgggggctggggtgggGggttgtcggggcattctctg	21	7	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36580044	A	A	36580044	1	1	151	0	1	0	0	0	0	0	0	0	17440	1247	43	4		4	WDR62	19	36580044	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	21316	36580044	22548939	1460	130947											
ZNF568	374900	broad.mit.edu	37	chr19	37441368	37441368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccctaaccgtacatatgcGaaatcatacagctgagaaac	6	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37441368	T	T	37441368	3	4	151	1	0	0	0	0	1	0	0	0	18126	1058	37	3	1331	3	ZNF568	19	37441368	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	861324	37441368	21687615	1461	130948											
ZNF585A	199704	broad.mit.edu	37	chr19	37643910	37643910	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacagttactgcactcataTggtttttctccagtatgaat	6	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37643910	A	A	37643910	2	1	151	1	0	0	0	0	0	0	0	1	18144	1451	51	5		5	ZNF585A	19	37643910	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	202542	37643910	21485073	1462	130949											
ZNF569	148266	broad.mit.edu	37	chr19	37904988	37904988	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgattgaagccttttccaCaatgattacacttaaagggg	8	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37904988	G	G	37904988	3	3	151	1	0	0	0	0	1	0	0	0	18127	478	17	4	1492	4	ZNF569	19	37904988	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	261078	37904988	21223995	1463	130950											
ZNF781	163115	broad.mit.edu	37	chr19	38159928	38159928	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattattaaaaaccttccCacattctttacactgatagg	3	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38159928	A	A	38159928	1	1	151	0	1	0	0	0	0	0	0	0	18283	609	21	2		2	ZNF781	19	38159928	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	254940	38159928	20969055	1464	130951											
SIPA1L3	23094	broad.mit.edu	37	chr19	38689108	38689108	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccctgggctgatgccCctgcctgacacagctgctgg	13	15	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38689108	G	G	38689108	2	3	151	1	0	0	0	0	0	0	0	1	14444	610	22	4		4	SIPA1L3	19	38689108	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	529180	38689108	20439875	1465	130952											
RASGRP4	115727	broad.mit.edu	37	chr19	38910858	38910858	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacctatgacttcttctagcTggggatcctggtgcatcacc	10	12	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38910858	A	A	38910858	3	1	151	1	0	0	0	0	1	0	0	0	13185	1580	55	5	1651	5	RASGRP4	19	38910858	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	221750	38910858	20218125	1466	130953											
RYR1	6261	broad.mit.edu	37	chr19	38997149	38997149	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaaaattaccacaacacGtggggacggaagaagaagca	12	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38997149	T	T	38997149	2	4	151	1	0	0	0	0	0	0	0	1	13879	1132	40	3		3	RYR1	19	38997149	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	86291	38997149	20131834	1467	130954											
RYR1	6261	broad.mit.edu	37	chr19	39009862	39009862	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacccctgcagtgttcgcaCagcccattgtgagccgtgca	11	15	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39009862	G	G	39009862	3	3	151	1	0	0	0	0	1	0	0	0	13879	479	17	4	10293	4	RYR1	19	39009862	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	12713	39009862	20119121	1468	130955											
SPTBN4	57731	broad.mit.edu	37	chr19	40995992	40995992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgccctagcccaggcccaCgcgcggccgcatgcggatcc	13	19	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40995992	A	A	40995992	3	1	151	1	0	0	0	0	1	0	0	0	15239	536	19	3	342	3	SPTBN4	19	40995992	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1986130	40995992	18132991	1469	130956											
CYP2A7	1549	broad.mit.edu	37	chr19	41382365	41382365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctacaccgcagagagGggaggtgggtgagggaggcg	21	8	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41382365	T	T	41382365	1	4	151	0	1	0	0	0	0	0	0	0	4196	1247	43	2		2	CYP2A7	19	41382365	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	386373	41382365	17746618	1470	130957											
CYP2A7	1549	broad.mit.edu	37	chr19	41382587	41382587	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtgccctggtagggaggaGgaagttgtgtgtgatgagga	20	4	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41382587	C	C	41382587	1	2	151	0	1	0	0	0	0	0	0	0	4196	1015	35	4		4	CYP2A7	19	41382587	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	222	41382587	17746396	1471	130958											
TMEM145	284339	broad.mit.edu	37	chr19	42824590	42824590	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgcccatggcgtgtttctgGtgaggatgggcatctgtggg	17	8	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42824590	C	C	42824590	5	2	151	1	0	0	0	0	0	0	1	0	16182	1275	44	4	1245	4	TMEM145	19	42824590	Splice_Site	SNP	G	TCGA-50-5049-01A-01D-1625-08	1442003	42824590	16304393	1472	130959											
CEACAM1	634	broad.mit.edu	37	chr19	43025290	43025290	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgaattgagagggttcaGgggagaatttggacttgttt	15	2	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43025290	C	C	43025290	1	2	151	0	1	0	0	0	0	0	0	0	3217	1015	35	4		4	CEACAM1	19	43025290	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	200700	43025290	16103693	1473	130960											
PSG3	5671	broad.mit.edu	37	chr19	43233648	43233648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcaagtgccagccaaaCcccctctatgttcactgagc	6	17	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43233648	A	A	43233648	1	1	151	0	1	0	0	0	0	0	0	0	12762	522	18	3		3	PSG3	19	43233648	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	208358	43233648	15895335	1474	130961											
PSG6	5675	broad.mit.edu	37	chr19	43448242	43448242	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaactagtagaattcagGgtaatgtccagtctacaggt	12	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43448242	A	A	43448242	1	1	151	0	1	0	0	0	0	0	0	0	12765	1247	43	4		4	PSG6	19	43448242	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	214594	43448242	15680741	1475	130962											
PSG11	5680	broad.mit.edu	37	chr19	43514114	43514114	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaggtcatcatacctgcCagtcttcctgaaatacaaaa	6	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43514114	G	G	43514114	1	3	151	0	1	0	0	0	0	0	0	0	12760	609	21	4		4	PSG11	19	43514114	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	65872	43514114	15614869	1476	130963											
PSG11	5680	broad.mit.edu	37	chr19	43523068	43523068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatcctatgagtcataGggaggctctgaccattcatc	10	11	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43523068	T	T	43523068	3	4	151	1	0	0	0	0	1	0	0	0	12760	1000	35	2	456	2	PSG11	19	43523068	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	8954	43523068	15605915	1477	130964											
PSG6	5675	broad.mit.edu	37	chr19	43527491	43527491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgtgagagctcctgagtGtgtgtctctcgctgggcctg	14	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43527491	T	T	43527491	1	4	151	0	1	0	0	0	0	0	0	0	12765	1392	48	3		3	PSG6	19	43527491	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	4423	43527491	15601492	1478	130965											
PSG6	5675	broad.mit.edu	37	chr19	43528960	43528960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctggatcagcagggatgCattggaatatactgtttctc	10	7	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43528960	A	A	43528960	3	1	151	1	0	0	0	0	1	0	0	0	12765	710	25	3		3	PSG6	19	43528960	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1469	43528960	15600023	1479	130966											
PSG6	5675	broad.mit.edu	37	chr19	43571216	43571216	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcttctttcctacaggcTcccagcaagggtgtgaaagc	10	11	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43571216	C	C	43571216	1	2	151	0	1	0	0	0	0	0	0	0	12765	1566	54	5		5	PSG6	19	43571216	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	42256	43571216	15557767	1480	130967											
PSG2	5670	broad.mit.edu	37	chr19	43575948	43575948	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctatgctttgtagtaatttGggggataaacagattttgtc	11	4	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43575948	A	A	43575948	4	1	151	1	0	0	0	0	0	1	0	0	12761	1357	47	4	147	4	PSG2	19	43575948	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4732	43575948	15553035	1481	130968											
PSG6	5675	broad.mit.edu	37	chr19	43576774	43576774	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgatttagggcttgggCagcttcgctgtgtggataac	15	6	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43576774	T	T	43576774	1	4	151	0	1	0	0	0	0	0	0	0	12765	725	25	4		4	PSG6	19	43576774	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	826	43576774	15552209	1482	130969											
PSG2	5670	broad.mit.edu	37	chr19	43579540	43579540	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgactgggtcactgcggctGgcactccctgagttccgtat	13	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43579540	A	A	43579540	2	1	151	1	0	0	0	0	0	0	0	1	12761	1335	47	4		4	PSG2	19	43579540	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	2766	43579540	15549443	1483	130970											
PSG5	5673	broad.mit.edu	37	chr19	43679260	43679260	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaatttgggatttgcttgtGcccatgggacacaggctggg	15	7	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43679260	C	C	43679260	1	2	151	0	1	0	0	0	0	0	0	0	12764	1334	46	4		4	PSG5	19	43679260	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	99720	43679260	15449723	1484	130971											
PSG5	5673	broad.mit.edu	37	chr19	43680000	43680000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagctggtgtcctggcccaCagaggaacaaaagatactca	10	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43680000	A	A	43680000	1	1	151	0	1	0	0	0	0	0	0	0	12764	493	17	3		3	PSG5	19	43680000	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	740	43680000	15448983	1485	130972											
IRGC	56269	broad.mit.edu	37	chr19	44223254	44223254	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccacgcgcacccagcggCcgtcgggcttcagagaggcc	15	17	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44223254	T	T	44223254	3	4	151	1	0	0	0	0	1	0	0	0	7908	739	26	4	546	4	IRGC	19	44223254	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	543254	44223254	14905729	1486	130973											
ZNF155	7711	broad.mit.edu	37	chr19	44495949	44495949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattttgcctaaatattaCccagaatgtgttgggattca	7	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44495949	A	A	44495949	1	1	151	0	1	0	0	0	0	0	0	0	17862	522	18	3		3	ZNF155	19	44495949	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	272695	44495949	14633034	1487	130974											
ZNF225	7768	broad.mit.edu	37	chr19	44636290	44636290	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccatcgtagagtccacagtgGagaaaaaccattcaaatgtg	9	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44636290	C	C	44636290	3	2	151	1	0	0	0	0	1	0	0	0	17905	1174	41	4	1537	4	ZNF225	19	44636290	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	140341	44636290	14492693	1488	130975											
ZNF227	7770	broad.mit.edu	37	chr19	44739160	44739160	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagattcagagtagaggtAagcaaattgatgtgaaaaat	10	4	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44739160	C	C	44739160	3	2	151	1	0	0	0	0	1	0	0	0	17907	363	13	5	591	5	ZNF227	19	44739160	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	102870	44739160	14389823	1489	130976											
CEACAM20	125931	broad.mit.edu	37	chr19	45015707	45015707	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgtacctcataggtctcCtctggaaggtctggtggttg	12	9	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45015707	T	T	45015707	2	4	151	1	0	0	0	0	0	0	0	1	3221	680	24	4		4	CEACAM20	19	45015707	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	276547	45015707	14113276	1490	130977											
APOC4	346	broad.mit.edu	37	chr19	45448326	45448326	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactcctaggtcacagagagGagcggataaatggggcagag	15	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45448326	T	T	45448326	1	4	151	0	1	0	0	0	0	0	0	0	802	1189	41	3		3	APOC4	19	45448326	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	432619	45448326	13680657	1491	130978											
CLPTM1	1209	broad.mit.edu	37	chr19	45495829	45495829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccacctggctgtggacGggccagcccgacctcacact	12	17	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45495829	T	T	45495829	1	4	151	0	1	0	0	0	0	0	0	0	3586	1131	39	1		1	CLPTM1	19	45495829	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	47503	45495829	13633154	1492	130979											
RELB	5971	broad.mit.edu	37	chr19	45525533	45525533	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctaagcgactggaggccAcccatgaaactttagagcag	10	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45525533	T	T	45525533	1	4	151	0	1	0	0	0	0	0	0	0	13325	174	6	5		5	RELB	19	45525533	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	29704	45525533	13603450	1493	130980											
PPP1R13L	10848	broad.mit.edu	37	chr19	45901276	45901276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcttaccctagaagggggtCcggcctgcgggccaggaggc	18	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45901276	A	A	45901276	3	1	151	1	0	0	0	0	1	0	0	0	12459	855	30	3	2345	3	PPP1R13L	19	45901276	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	375743	45901276	13227707	1494	130981											
GPR4	2828	broad.mit.edu	37	chr19	46095190	46095190	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggggccacagggagcgGgaggccatggggccccctga	19	12	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46095190	A	A	46095190	1	1	151	0	1	0	0	0	0	0	0	0	6759	1247	43	4		4	GPR4	19	46095190	5'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	193914	46095190	13033793	1495	130982											
NOVA2	4858	broad.mit.edu	37	chr19	46443365	46443365	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaggttctcaggcaccGcaatctccaccagctccttg	7	18	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46443365	A	A	46443365	3	1	151	1	0	0	0	0	1	0	0	0	10650	1087	38	4	247	4	NOVA2	19	46443365	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	348175	46443365	12685618	1496	130983											
CCDC8	83987	broad.mit.edu	37	chr19	46916052	46916052	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcaaatagtcgacgtcctCcccgatctgcagcatcccca	8	16	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46916052	A	A	46916052	4	1	151	1	0	0	0	0	0	1	0	0	2881	864	30	3	1604	3	CCDC8	19	46916052	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	472687	46916052	12212931	1497	130984											
CCDC9	26093	broad.mit.edu	37	chr19	47763903	47763903	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcggcccccaggggccaGcaaggggggccggactcctc	15	18	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47763903	T	T	47763903	3	4	151	1	0	0	0	0	1	0	0	0	2895	971	34	3	283	3	CCDC9	19	47763903	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	847851	47763903	11365080	1498	130985											
C5AR1	728	broad.mit.edu	37	chr19	47823415	47823415	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgccagcatcctgctcctGgccaccatcagcgccgaccg	9	19	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47823415	T	T	47823415	2	4	151	1	0	0	0	0	0	0	0	1	2304	1335	47	2		2	C5AR1	19	47823415	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	59512	47823415	11305568	1499	130986											
ELSPBP1	64100	broad.mit.edu	37	chr19	48523149	48523149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccagtaatctggggatgGgggttgggtgggtgtgggtg	21	4	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48523149	T	T	48523149	1	4	151	0	1	0	0	0	0	0	0	0	5125	1247	43	2		2	ELSPBP1	19	48523149	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	699734	48523149	10605834	1500	130987											
LMTK3	114783	broad.mit.edu	37	chr19	49004502	49004502	+	Intron	DEL	C	-	-													tctagtaacccttccaccttCctggcctgcctcggcccccg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49004502	-	-	49004502	6	5	151	0	1	1	0	1	0	0	0	0	8934	870	30	0		0	LMTK3	19	49004502	Intron	DEL	C	TCGA-50-5049-01A-01D-1625-08	481353	49004502	10124481	1501	130988											
CGB2	114336	broad.mit.edu	37	chr19	49535474	49535474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactggcatgagaaggggCagaccagtgtgagctgtgga	16	7	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49535474	A	A	49535474	1	1	151	0	1	0	0	0	0	0	0	0	3328	725	25	3		3	CGB2	19	49535474	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	530972	49535474	9593509	1502	130989											
CGB	1082	broad.mit.edu	37	chr19	49547628	49547628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtggggcagttcctaaGggtggggatctgaaattttg	16	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49547628	T	T	49547628	1	4	151	0	1	0	0	0	0	0	0	0	3326	1015	35	2		2	CGB	19	49547628	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	12154	49547628	9581355	1503	130990											
TRPM4	54795	broad.mit.edu	37	chr19	49684691	49684691	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggacattgcccagagtgaActctttcggggggacatcca	13	10	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49684691	T	T	49684691	3	4	151	1	0	0	0	0	1	0	0	0	16713	40	2	5	1274	5	TRPM4	19	49684691	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	137063	49684691	9444292	1504	130991											
ALDH16A1	126133	broad.mit.edu	37	chr19	49967043	49967043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagggaggaggggctggGgtcctgcagtcctcggtctc	18	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49967043	T	T	49967043	1	4	151	0	1	0	0	0	0	0	0	0	488	1247	43	2		2	ALDH16A1	19	49967043	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	282352	49967043	9161940	1505	130992											
CPT1C	126129	broad.mit.edu	37	chr19	50209380	50209380	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaagggtcaggggtcagGggtcaggggctctcagaggc	20	7	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50209380	A	A	50209380	1	1	151	0	1	0	0	0	0	0	0	0	3865	1247	43	4		4	CPT1C	19	50209380	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	242337	50209380	8919603	1506	130993											
CPT1C	126129	broad.mit.edu	37	chr19	50216267	50216267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtttcttatatcttcatGggggatggcatgatcacctt	11	7	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50216267	T	T	50216267	3	4	151	1	0	0	0	0	1	0	0	0	3865	1348	47	2	2238	2	CPT1C	19	50216267	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	6887	50216267	8912716	1507	130994											
AP2A1	160	broad.mit.edu	37	chr19	50302620	50302620	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcgggcctgcaaccagctGggccagttcctgcagcaccg	13	15	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50302620	T	T	50302620	2	4	151	1	0	0	0	0	0	0	0	1	741	1335	47	2		2	AP2A1	19	50302620	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	86353	50302620	8826363	1508	130995											
C19orf41	126123	broad.mit.edu	37	chr19	50657931	50657931	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaacagcgcctggttcctCgggtatttgctgtccatctg	10	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50657931	A	A	50657931	2	1	151	1	0	0	0	0	0	0	0	1	1943	871	31	3		3	C19orf41	19	50657931	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	355311	50657931	8471052	1509	130996											
MYBPC2	4606	broad.mit.edu	37	chr19	50958471	50958471	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accaagatgatcgagggcatCctctatgagatgcgtgtctt	11	9	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50958471	A	A	50958471	2	1	151	1	0	0	0	0	0	0	0	1	10106	845	30	3		3	MYBPC2	19	50958471	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	300540	50958471	8170512	1510	130997											
GPR32	2854	broad.mit.edu	37	chr19	51274753	51274753	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggatgctgctcatcctccAggctagctttgccttgggct	11	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51274753	C	C	51274753	3	2	151	1	0	0	0	0	1	0	0	0	6753	188	7	5	898	5	GPR32	19	51274753	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	316282	51274753	7854230	1511	130998											
SIGLEC9	27180	broad.mit.edu	37	chr19	51630361	51630361	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcgcctggtctgtgcagttGatgcagttgacagcaatccc	12	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51630361	C	C	51630361	3	2	151	1	0	0	0	0	1	0	0	0	14428	1290	45	4	837	4	SIGLEC9	19	51630361	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	355608	51630361	7498622	1512	130999											
SIGLEC7	27036	broad.mit.edu	37	chr19	51648275	51648275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcagctcagggcagggCcaggtccctcctcatcctgg	12	16	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51648275	A	A	51648275	1	1	151	0	1	0	0	0	0	0	0	0	14426	754	26	3		3	SIGLEC7	19	51648275	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	17914	51648275	7480708	1513	131000											
CD33	945	broad.mit.edu	37	chr19	51729397	51729397	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggagacaggatgggctgGtgctggggacatttagtgtc	19	5	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51729397	T	T	51729397	1	4	151	0	1	0	0	0	0	0	0	0	3035	1276	44	3		3	CD33	19	51729397	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	81122	51729397	7399586	1514	131001											
CD33	945	broad.mit.edu	37	chr19	51729641	51729641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctccccgcctggggctGttactgacattgagtctgtg	13	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51729641	T	T	51729641	1	4	151	0	1	0	0	0	0	0	0	0	3035	1392	48	3		3	CD33	19	51729641	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	244	51729641	7399342	1515	131002											
CD33	945	broad.mit.edu	37	chr19	51738451	51738451	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagtggttcatggggccaTtggaggagctggtgttacag	18	5	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51738451	C	C	51738451	3	2	151	1	0	0	0	0	1	0	0	0	3035	1493	52	5	803	5	CD33	19	51738451	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	8810	51738451	7390532	1516	131003											
SIGLEC10	89790	broad.mit.edu	37	chr19	51919589	51919589	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgttgtcacgtgaaatgctGataacaaggtctctgggggc	14	7	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51919589	A	A	51919589	2	1	151	1	0	0	0	0	0	0	0	1	14419	1280	45	4		4	SIGLEC10	19	51919589	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	181138	51919589	7209394	1517	131004											
SIGLEC5	8778	broad.mit.edu	37	chr19	52132675	52132675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggcgtttcatctgacaGgtgaggttggtgccatggtc	14	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52132675	T	T	52132675	2	4	151	1	0	0	0	0	0	0	0	1	14424	987	35	2		2	SIGLEC5	19	52132675	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	213086	52132675	6996308	1518	131005											
ZNF616	90317	broad.mit.edu	37	chr19	52618394	52618394	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctgatgtgcagtgaggtTtgagctccgtttaaaggttt	12	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52618394	A	A	52618394	3	1	151	1	0	0	0	0	1	0	0	0	18168	1841	64	5	326	5	ZNF616	19	52618394	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	485719	52618394	6510589	1519	131006											
ZNF578	147660	broad.mit.edu	37	chr19	53015127	53015127	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcagtcacaggtcatctcTtccatgccatcgtagacttc	6	14	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53015127	C	C	53015127	3	2	151	1	0	0	0	0	1	0	0	0	18137	1609	56	5	1503	5	ZNF578	19	53015127	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	396733	53015127	6113856	1520	131007											
ZNF808	388558	broad.mit.edu	37	chr19	53059092	53059092	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtcaagcttcatcctatGcaaaacaggagaattcatac	6	10	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53059092	T	T	53059092	1	4	151	0	1	0	0	0	0	0	0	0	18302	1334	46	3		3	ZNF808	19	53059092	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	43965	53059092	6069891	1521	131008											
ZNF611	81856	broad.mit.edu	37	chr19	53208789	53208789	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcacatttgtaaggttgctCcccagtatgaattgacttat	7	8	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53208789	T	T	53208789	3	4	151	1	0	0	0	0	1	0	0	0	18164	864	30	4	602	4	ZNF611	19	53208789	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	149697	53208789	5920194	1522	131009											
ZNF320	162967	broad.mit.edu	37	chr19	53383932	53383932	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgatgttctgcaaggaGtgacctcagactaaagacct	9	9	3	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53383932	T	T	53383932	3	4	151	1	0	0	0	0	1	0	0	0	17965	1029	36	3	86	3	ZNF320	19	53383932	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	175143	53383932	5745051	1523	131010											
ZNF677	342926	broad.mit.edu	37	chr19	53741861	53741861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcaaatagagttgcaagGtaaatattttattaaaatac	5	5	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53741861	T	T	53741861	1	4	151	0	1	0	0	0	0	0	0	0	18211	1276	44	3		3	ZNF677	19	53741861	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	357929	53741861	5387122	1524	131011											
NLRP12	91662	broad.mit.edu	37	chr19	54314539	54314539	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtccctgtaggtttcctggGgatctaggggagaggaatga	16	6	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54314539	C	C	54314539	3	2	151	1	0	0	0	0	1	0	0	0	10569	1232	43	4	2939	4	NLRP12	19	54314539	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	572678	54314539	4814444	1525	131012											
LILRB3	11025	broad.mit.edu	37	chr19	54721091	54721091	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaggtcacatcctgggaGgcttcagatgcagcagcctg	14	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54721091	C	C	54721091	2	2	151	1	0	0	0	0	0	0	0	1	8864	987	35	4		4	LILRB3	19	54721091	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	406552	54721091	4407892	1526	131013											
LILRB1	10859	broad.mit.edu	37	chr19	55142773	55142773	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggtgagtctgtccccaGctcttccaggtccctcctcc	10	17	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55142773	C	C	55142773	1	2	151	0	1	0	0	0	0	0	0	0	8862	986	34	4		4	LILRB1	19	55142773	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	421682	55142773	3986210	1527	131014											
LILRB1	10859	broad.mit.edu	37	chr19	55144093	55144093	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctgggctctcccaggcCaacttcaccctgggccctgt	11	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55144093	A	A	55144093	2	1	151	1	0	0	0	0	0	0	0	1	8862	581	21	2		2	LILRB1	19	55144093	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1320	55144093	3984890	1528	131015											
LILRB4	11006	broad.mit.edu	37	chr19	55175015	55175015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgggccccaggacccaCatgcaggcaggtgagtctgt	14	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55175015	A	A	55175015	3	1	151	1	0	0	0	0	1	0	0	0	8865	477	17	3	66	3	LILRB4	19	55175015	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	30922	55175015	3953968	1529	131016											
KIR3DL1	3811	broad.mit.edu	37	chr19	55330026	55330026	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactgggtggtcggcaccCagcaaccccgtggtgatcat	12	15	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55330026	A	A	55330026	2	1	151	1	0	0	0	0	0	0	0	1	8391	581	21	2		2	KIR3DL1	19	55330026	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	155011	55330026	3798957	1530	131017											
KIR3DL1	3811	broad.mit.edu	37	chr19	55346706	55346706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcggcccacagttccgaCcttgcctccctggcctctca	8	19	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55346706	A	A	55346706	1	1	151	0	1	0	0	0	0	0	0	0	8391	522	18	3		3	KIR3DL1	19	55346706	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	16680	55346706	3782277	1531	131018											
NLRP7	199713	broad.mit.edu	37	chr19	55450172	55450172	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaagaagtccagccagAgggaaattctgacagtaagc	12	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55450172	T	T	55450172	1	4	151	0	1	0	0	0	0	0	0	0	10577	319	11	5		5	NLRP7	19	55450172	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	103466	55450172	3678811	1532	131019											
SYT5	6861	broad.mit.edu	37	chr19	55686395	55686395	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggggcccatcaccagaGccccggctccacatccatgc	11	17	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55686395	T	T	55686395	1	4	151	0	1	0	0	0	0	0	0	0	15596	986	34	3		3	SYT5	19	55686395	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	236223	55686395	3442588	1533	131020											
PTPRH	5794	broad.mit.edu	37	chr19	55710186	55710186	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagacccagtagctgtaGgaagactggcctgggccctg	14	11	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55710186	T	T	55710186	2	4	151	1	0	0	0	0	0	0	0	1	12911	987	35	2		2	PTPRH	19	55710186	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	23791	55710186	3418797	1534	131021											
BRSK1	84446	broad.mit.edu	37	chr19	55817713	55817713	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcttccaaaagcccgtcCgcttccaggtggacatcagc	9	16	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55817713	T	T	55817713	3	4	151	1	0	0	0	0	1	0	0	0	1532	652	23	4	2050	4	BRSK1	19	55817713	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	107527	55817713	3311270	1535	131022											
NLRP13	126204	broad.mit.edu	37	chr19	56436007	56436008	+	Nonsense_Mutation	DNP	CC	AA	AA													ttggtttggatcttggcatcCctgggtctgcatattccctg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	56436008	AA	AA	56436007	4	1	151	1	0	0	0	0	0	1	0	0	10570	632	22	2	2759	2	NLRP13	19	56436007	Nonsense_Mutation	DNP	CC	TCGA-50-5049-01A-01D-1625-08	618294	56436007	2692976	1536	131023											
ZNF582	147948	broad.mit.edu	37	chr19	56903218	56903218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagctgggggaggaaagagCaaacatgagaggctaggctt	17	5	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56903218	A	A	56903218	1	1	151	0	1	0	0	0	0	0	0	0	18141	725	25	3		3	ZNF582	19	56903218	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	467211	56903218	2225765	1537	131024											
PEG3	5178	broad.mit.edu	37	chr19	57325840	57325840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtatagctcctttgagggGctcagtaagaaatgaggtgt	14	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57325840	T	T	57325840	3	4	151	1	0	0	0	0	1	0	0	0	11814	1203	42	3	800	3	PEG3	19	57325840	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	422622	57325840	1803143	1538	131025											
PEG3	5178	broad.mit.edu	37	chr19	57327572	57327572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatggtgaacgccttttcGtcctcatcactttcaagagg	8	11	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57327572	T	T	57327572	3	4	151	1	0	0	0	0	1	0	0	0	11814	1136	40	3	2532	3	PEG3	19	57327572	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1732	57327572	1801411	1539	131026											
AURKC	6795	broad.mit.edu	37	chr19	57743931	57743931	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccaatatcctgcgcctGtataactatttccatgatgc	5	14	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57743931	T	T	57743931	2	4	151	1	0	0	0	0	0	0	0	1	1229	1364	48	3		3	AURKC	19	57743931	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	416359	57743931	1385052	1540	131027											
ZNF543	125919	broad.mit.edu	37	chr19	57839241	57839241	+	Silent	SNP	A	T	T													caagaagtccacttgaaaatAgggataggcccccagcgggg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57839241	T	T	57839241	2	4	151	1	0	0	0	0	0	0	0	1	18103	410	15	5		5	ZNF543	19	57839241	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	95310	57839241	1289742	1541	131028	566	2									
ZNF543	125919	broad.mit.edu	37	chr19	57839243	57839243	+	Missense_Mutation	SNP	G	T	T													agaagtccacttgaaaatagGgataggcccccagcggggga							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57839243	T	T	57839243	3	4	151	1	0	0	0	0	1	0	0	0	18103	1232	43	2	427	2	ZNF543	19	57839243	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2	57839243	1289740	1542	131029	566	2									
ZSCAN1	284312	broad.mit.edu	37	chr19	58563742	58563742	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaacaggcgcgacaccgcgCactgccctgggacagagcct	12	16	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58563742	T	T	58563742	1	4	151	0	1	0	0	0	0	0	0	0	18355	725	25	4		4	ZSCAN1	19	58563742	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	724499	58563742	565241	1543	131030											
ZNF8	7554	broad.mit.edu	37	chr19	58806148	58806148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagtctttctgccataGtacacaccttaccgtccatc	7	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58806148	T	T	58806148	3	4	151	1	0	0	0	0	1	0	0	0	18296	1029	36	3	988	3	ZNF8	19	58806148	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	242406	58806148	322835	1544	131031											
DEFB129	140881	broad.mit.edu	37	chr20	207925	207925	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcttcctctctggcaccCaaccatgaagctcctttttc	6	15	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207925	A	A	207925	1	1	151	0	1	0	0	0	0	0	0	0	4454	608	21	2		2	DEFB129	20	207925	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08		207925	62817595	1545	131032											
TGM3	7053	broad.mit.edu	37	chr20	2290212	2290212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcccttgacaagcctcaCcccaaagctgctctttggta	7	15	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2290212	A	A	2290212	1	1	151	0	1	0	0	0	0	0	0	0	15954	522	18	3		3	TGM3	20	2290212	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2082287	2290212	60735308	1546	131033											
ZNF343	79175	broad.mit.edu	37	chr20	2464827	2464827	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcttccctaagagggtcctCgggtttgtaataaagtttga	10	7	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2464827	A	A	2464827	2	1	151	1	0	0	0	0	0	0	0	1	17984	871	31	3		3	ZNF343	20	2464827	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	174615	2464827	60560693	1547	131034											
MAVS	57506	broad.mit.edu	37	chr20	3844800	3844800	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaggagatttggaggcctaGacacagtagggaccatgaga	15	7	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3844800	T	T	3844800	1	4	151	0	1	0	0	0	0	0	0	0	9430	957	33	3		3	MAVS	20	3844800	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1379973	3844800	59180720	1548	131035											
RASSF2	9770	broad.mit.edu	37	chr20	4778672	4778672	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacctcccggtgccggagcTgtaaattctggccttcatag	10	12	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4778672	A	A	4778672	3	1	151	1	0	0	0	0	1	0	0	0	13194	1580	55	5	897	5	RASSF2	20	4778672	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	933872	4778672	58246848	1549	131036											
PROKR2	128674	broad.mit.edu	37	chr20	5283320	5283320	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaccatccagaccaaggcgAtcaggaaggaggccgtttga	12	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5283320	T	T	5283320	3	4	151	1	0	0	0	0	1	0	0	0	12659	333	12	5	636	5	PROKR2	20	5283320	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	504648	5283320	57742200	1550	131037											
MCM8	84515	broad.mit.edu	37	chr20	5966774	5966774	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatctttgattcgtctgacAgaggtttgtttctttttatg	9	5	3	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5966774	T	T	5966774	2	4	151	1	0	0	0	0	0	0	0	1	9486	175	7	5		5	MCM8	20	5966774	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	683454	5966774	57058746	1551	131038											
PLCB1	23236	broad.mit.edu	37	chr20	8782749	8782749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacttgccatgaggatcCctctgtttcccccaacttta	7	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8782749	A	A	8782749	1	1	151	0	1	0	0	0	0	0	0	0	12122	623	22	2		2	PLCB1	20	8782749	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2815975	8782749	54242771	1552	131039											
PAK7	57144	broad.mit.edu	37	chr20	9547088	9547088	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggatctgaatgccacagcCgagtggtgagtgagctgact	14	9	1	4	rs148946132	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9547088	T	T	9547088	1	4	151	0	1	0	0	0	0	0	0	0	11499	667	23	4		4	PAK7	20	9547088	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	764339	9547088	53478432	1553	131040											
PAK7	57144	broad.mit.edu	37	chr20	9561157	9561158	+	Frame_Shift_Ins	INS	-	T	T													aggtcactgtattcacttggINStttgctcagtgagtccaaat							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9561158	T	T	9561157	7	5	151	1	0	1	1	0	0	0	0	0	11499	1261	44	0	1562	0	PAK7	20	9561157	Frame_Shift_Ins	INS	-	TCGA-50-5049-01A-01D-1625-08	14069	9561157	53464363	1554	131041											
ANKRD5	63926	broad.mit.edu	37	chr20	10035065	10035065	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaataatattagaaaatcAgtatagatttttacaattta	4	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10035065	T	T	10035065	1	4	151	0	1	0	0	0	0	0	0	0	676	203	7	5		5	ANKRD5	20	10035065	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	473908	10035065	52990455	1555	131042											
RRBP1	6238	broad.mit.edu	37	chr20	17616121	17616121	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgccagctgccctggcCgcagcctcgtgaagccttcc	11	17	0	1	rs147035013	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17616121	G	G	17616121	1	3	151	0	1	0	0	0	0	0	0	0	13789	667	23	4		4	RRBP1	20	17616121	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	7581056	17616121	45409399	1556	131043											
ACSS1	84532	broad.mit.edu	37	chr20	24988421	24988421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttagcagcagcctgcttgtCcttgcacttctggtagacac	9	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24988421	A	A	24988421	3	1	151	1	0	0	0	0	1	0	0	0	188	855	30	3	26	3	ACSS1	20	24988421	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	7372300	24988421	38037099	1557	131044											
ENTPD6	955	broad.mit.edu	37	chr20	25203621	25203621	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggcctcataggtaaggGggcccggatgggctgagcag	19	8	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25203621	A	A	25203621	1	1	151	0	1	0	0	0	0	0	0	0	5185	1247	43	4		4	ENTPD6	20	25203621	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	215200	25203621	37821899	1558	131045											
DEFB119	245932	broad.mit.edu	37	chr20	29978119	29978119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcaaacctcccgaagCtgcaggagagaaggaaaggc	14	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29978119	A	A	29978119	1	1	151	0	1	0	0	0	0	0	0	0	4446	812	28	3		3	DEFB119	20	29978119	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	4774498	29978119	33047401	1559	131046											
MYLK2	85366	broad.mit.edu	37	chr20	30418704	30418704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacggaggtaccacctggGtgggtggggagggcaagaca	20	8	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30418704	T	T	30418704	1	4	151	0	1	0	0	0	0	0	0	0	10151	1276	44	3		3	MYLK2	20	30418704	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	440585	30418704	32606816	1560	131047											
TTLL9	164395	broad.mit.edu	37	chr20	30512840	30512840	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgacctgcgtgtctatgtGctggtgatgtcggtgagtaa	14	6	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30512840	A	A	30512840	2	1	151	1	0	0	0	0	0	0	0	1	16860	1306	46	4		4	TTLL9	20	30512840	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	94136	30512840	32512680	1561	131048											
ASXL1	171023	broad.mit.edu	37	chr20	31016111	31016111	+	Intron	DEL	A	-	-													ggcactagggactaacctttAttttcctctcttccagtatc					rs140029019	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31016111	-	-	31016111	6	5	151	0	1	1	0	1	0	0	0	0	1070	464	16	0		0	ASXL1	20	31016111	Intron	DEL	A	TCGA-50-5049-01A-01D-1625-08	503271	31016111	32009409	1562	131049											
C20orf186	149954	broad.mit.edu	37	chr20	31672780	31672780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacctgagcttgtacaccCgtgtggccatcaacgggaag	11	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31672780	A	A	31672780	3	1	151	1	0	0	0	0	1	0	0	0	2120	652	23	1	774	1	C20orf186	20	31672780	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	656669	31672780	31352740	1563	131050											
PLUNC	51297	broad.mit.edu	37	chr20	31828099	31828099	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggacatcactgcagaaatCttagctgtgagagataagca	10	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31828099	G	G	31828099	3	3	151	1	0	0	0	0	1	0	0	0	12210	903	32	4	503	4	PLUNC	20	31828099	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	155319	31828099	31197421	1564	131051											
AHCY	191	broad.mit.edu	37	chr20	32873372	32873372	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtggcccatggcacaaccCaggttgaccagccgaccctc	12	16	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32873372	T	T	32873372	2	4	151	1	0	0	0	0	0	0	0	1	409	581	21	4		4	AHCY	20	32873372	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1045273	32873372	30152148	1565	131052											
DLGAP4	22839	broad.mit.edu	37	chr20	35061089	35061089	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcaagtccaaatcctgCcaccagggtctagcctacca	7	16	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35061089	G	G	35061089	3	3	151	1	0	0	0	0	1	0	0	0	4602	747	26	4	971	4	DLGAP4	20	35061089	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2187717	35061089	27964431	1566	131053											
C20orf132	140699	broad.mit.edu	37	chr20	35748921	35748921	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttacctccacaaaaaagcCtgcagatgtgagtttatgtt	7	9	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35748921	G	G	35748921	3	3	151	1	0	0	0	0	1	0	0	0	2108	681	24	4	945	4	C20orf132	20	35748921	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	687832	35748921	27276599	1567	131054											
RPN2	6185	broad.mit.edu	37	chr20	35832307	35832307	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacagtccaggctctgcagAcagcatcccacctgtcccag	9	16	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35832307	G	G	35832307	3	3	151	1	0	0	0	0	1	0	0	0	13719	275	10	5	517	5	RPN2	20	35832307	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	83386	35832307	27193213	1568	131055											
SRC	6714	broad.mit.edu	37	chr20	36031073	36031073	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccagttttttcctcagctGtcattcctcatggtgcttat	6	13	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36031073	C	C	36031073	1	2	151	0	1	0	0	0	0	0	0	0	15252	1392	48	4		4	SRC	20	36031073	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	198766	36031073	26994447	1569	131056											
RALGAPB	57148	broad.mit.edu	37	chr20	37163553	37163553	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgcaccgtgtagtcagGcttggcactcaacccagtgg	12	13	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37163553	T	T	37163553	1	4	151	0	1	0	0	0	0	0	0	0	13123	1218	42	3		3	RALGAPB	20	37163553	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1132480	37163553	25861967	1570	131057											
SLC32A1	140679	broad.mit.edu	37	chr20	37356650	37356650	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattggcatcatcgtgttcAgctacacgtctcagatcttc	7	13	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37356650	T	T	37356650	3	4	151	1	0	0	0	0	1	0	0	0	14679	188	7	5	952	5	SLC32A1	20	37356650	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	193097	37356650	25668870	1571	131058											
PPP1R16B	26051	broad.mit.edu	37	chr20	37529274	37529274	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggaacatgccatatgaccTctgcgaggatgaacccaccc	10	13	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37529274	A	A	37529274	3	1	151	1	0	0	0	0	1	0	0	0	12467	1551	54	5	532	5	PPP1R16B	20	37529274	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	172624	37529274	25496246	1572	131059											
PPP1R16B	26051	broad.mit.edu	37	chr20	37531465	37531465	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggccagtaccaaaaccaaGaccagctaggtccgaagtgg	12	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37531465	T	T	37531465	1	4	151	0	1	0	0	0	0	0	0	0	12467	957	33	3		3	PPP1R16B	20	37531465	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2191	37531465	25494055	1573	131060											
PPP1R16B	26051	broad.mit.edu	37	chr20	37536304	37536304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcactcaactttggctgGcattgttttcttgcctccct	6	14	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37536304	T	T	37536304	1	4	151	0	1	0	0	0	0	0	0	0	12467	1218	42	3		3	PPP1R16B	20	37536304	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	4839	37536304	25489216	1574	131061											
TOP1	7150	broad.mit.edu	37	chr20	39706143	39706143	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcatgatgtcccaggaactGatgctacatattctcaaaaa	6	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39706143	T	T	39706143	1	4	151	0	1	0	0	0	0	0	0	0	16487	1305	45	3		3	TOP1	20	39706143	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	2169839	39706143	23319377	1575	131062											
PLCG1	5335	broad.mit.edu	37	chr20	39800785	39800785	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcaggggcttccttctccTgggcagggctgtagcctggg	17	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39800785	A	A	39800785	1	1	151	0	1	0	0	0	0	0	0	0	12130	1595	55	5		5	PLCG1	20	39800785	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	94642	39800785	23224735	1576	131063											
PTPRT	11122	broad.mit.edu	37	chr20	40744000	40744001	+	Intron	DNP	GG	TA	TA													cagagacagaacagagacaaGgatgcataagcacatggctg							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	40744001	TA	TA	40744000	1	4	151	0	1	0	0	0	0	0	0	0	12920	1015	35	2		2	PTPRT	20	40744000	Intron	DNP	GG	TCGA-50-5049-01A-01D-1625-08	943215	40744000	22281520	1577	131064											
PTPRT	11122	broad.mit.edu	37	chr20	40944658	40944658	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggacaggaaagaggagacaCagatggttgagcaactttct	13	6	1	4	rs41279244	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40944658	G	G	40944658	1	3	151	0	1	0	0	0	0	0	0	0	12920	493	17	4		4	PTPRT	20	40944658	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	200658	40944658	22080862	1578	131065											
PTPRT	11122	broad.mit.edu	37	chr20	41514386	41514386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagtaagttcttcccccCatgattcacggtaaaaacta	6	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41514386	A	A	41514386	1	1	151	0	1	0	0	0	0	0	0	0	12920	609	21	2		2	PTPRT	20	41514386	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	569728	41514386	21511134	1579	131066											
KCNK15	60598	broad.mit.edu	37	chr20	43379220	43379220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaacctggtggtcctgcGcttcctcgttgccagcgccg	11	17	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43379220	T	T	43379220	3	4	151	1	0	0	0	0	1	0	0	0	8132	1087	38	3	740	3	KCNK15	20	43379220	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1864834	43379220	19646300	1580	131067											
PIGT	51604	broad.mit.edu	37	chr20	44048032	44048032	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctcttgccctgtagttcCaaggtgaggccgcagagcct	12	12	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44048032	T	T	44048032	2	4	151	1	0	0	0	0	0	0	0	1	11994	581	21	4		4	PIGT	20	44048032	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	668812	44048032	18977488	1581	131068											
ZNF335	63925	broad.mit.edu	37	chr20	44590956	44590956	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggcatgtggacaacacacCccgacgcaagggtcaaaacc	10	14	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44590956	G	G	44590956	1	3	151	0	1	0	0	0	0	0	0	0	17978	638	22	4		4	ZNF335	20	44590956	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	542924	44590956	18434564	1582	131069											
SLC12A5	57468	broad.mit.edu	37	chr20	44663650	44663650	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacacagagaagggaaaggAgtatgatggcaagaacatgg	15	5	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44663650	T	T	44663650	3	4	151	1	0	0	0	0	1	0	0	0	14499	304	11	5	247	5	SLC12A5	20	44663650	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	72694	44663650	18361870	1583	131070											
ZNF334	55713	broad.mit.edu	37	chr20	45130108	45130108	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattcatatggtttctctcCtgtgtgaattcttctatgga	7	8	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45130108	A	A	45130108	4	1	151	1	0	0	0	0	0	1	0	0	17977	690	24	2	176	2	ZNF334	20	45130108	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	466458	45130108	17895412	1584	131071											
ZMYND8	23613	broad.mit.edu	37	chr20	45858633	45858633	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatacttaaaatctatctgTataaagcagaggttctcaac	5	7	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45858633	C	C	45858633	1	2	151	0	1	0	0	0	0	0	0	0	17837	1653	57	5		5	ZMYND8	20	45858633	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	728525	45858633	17166887	1585	131072											
NCOA3	8202	broad.mit.edu	37	chr20	46279623	46279623	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaaaagaaggccctgGgtgttttctgtcttatacct	8	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46279623	C	C	46279623	1	2	151	0	1	0	0	0	0	0	0	0	10325	1247	43	4		4	NCOA3	20	46279623	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	420990	46279623	16745897	1586	131073											
PREX1	57580	broad.mit.edu	37	chr20	47265980	47265980	+	Missense_Mutation	SNP	C	A	A													gtcttcctgaccaagggtccCactggctggcccgaagctgc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47265980	A	A	47265980	3	1	151	1	0	0	0	0	1	0	0	0	12582	594	21	2	1880	2	PREX1	20	47265980	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	986357	47265980	15759540	1587	131074	567	2									
PREX1	57580	broad.mit.edu	37	chr20	47265982	47265982	+	Missense_Mutation	SNP	C	A	A													cttcctgaccaagggtcccaCtggctggcccgaagctgcca							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47265982	A	A	47265982	3	1	151	1	0	0	0	0	1	0	0	0	12582	565	20	3	1882	3	PREX1	20	47265982	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2	47265982	15759538	1588	131075	567	2									
PREX1	57580	broad.mit.edu	37	chr20	47317280	47317280	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaccccatcccagcctccTggccactcacctggatttcc	6	20	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47317280	A	A	47317280	1	1	151	0	1	0	0	0	0	0	0	0	12582	1595	55	5		5	PREX1	20	47317280	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	51298	47317280	15708240	1589	131076											
NFATC2	4773	broad.mit.edu	37	chr20	50139611	50139611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcaatcattttcaaagcCctgctcacctgcagatggga	8	11	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50139611	A	A	50139611	1	1	151	0	1	0	0	0	0	0	0	0	10457	638	22	2		2	NFATC2	20	50139611	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2822331	50139611	12885909	1590	131077											
TSHZ2	128553	broad.mit.edu	37	chr20	51871053	51871053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcagaagaacgccaacttGcagttgtcctccaacaaccg	7	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51871053	T	T	51871053	3	4	151	1	0	0	0	0	1	0	0	0	16749	1310	46	3	1062	3	TSHZ2	20	51871053	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1731442	51871053	11154467	1591	131078											
TSHZ2	128553	broad.mit.edu	37	chr20	51872417	51872417	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcctccccaaagccaccaCcccaaagccagcctcctcct	4	22	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51872417	T	T	51872417	3	4	151	1	0	0	0	0	1	0	0	0	16749	507	18	4	2426	4	TSHZ2	20	51872417	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1364	51872417	11153103	1592	131079											
ZNF217	7764	broad.mit.edu	37	chr20	52198754	52198754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctctcggccgcgtgcacCtggacgacctcgttgatcgt	12	14	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52198754	A	A	52198754	3	1	151	1	0	0	0	0	1	0	0	0	17898	680	24	2	2550	2	ZNF217	20	52198754	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	326337	52198754	10826766	1593	131080											
CYP24A1	1591	broad.mit.edu	37	chr20	52782353	52782353	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagcccaaatctcttctcAtacaacacgaggcagatacc	6	13	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52782353	T	T	52782353	4	4	151	1	0	0	0	0	0	1	0	0	4187	224	8	5	912	5	CYP24A1	20	52782353	Nonsense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	583599	52782353	10243167	1594	131081											
CBLN4	140689	broad.mit.edu	37	chr20	54573763	54573763	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacgagtaacatctttgtcCcccgcaaaggcagatattac	7	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54573763	A	A	54573763	2	1	151	1	0	0	0	0	0	0	0	1	2733	610	22	2		2	CBLN4	20	54573763	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	1791410	54573763	8451757	1595	131082											
MC3R	4159	broad.mit.edu	37	chr20	54824621	54824621	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactcatgcatgaagggggCagtcaccatcaccattctcc	8	14	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54824621	T	T	54824621	3	4	151	1	0	0	0	0	1	0	0	0	9458	710	25	4	724	4	MC3R	20	54824621	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	250858	54824621	8200899	1596	131083											
CTCFL	140690	broad.mit.edu	37	chr20	56098207	56098207	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgatcctcttgttcttccAcatttgaatttgaaactgtg	7	8	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56098207	T	T	56098207	3	4	151	1	0	0	0	0	1	0	0	0	4035	159	6	5	1356	5	CTCFL	20	56098207	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1273586	56098207	6927313	1597	131084											
PCK1	5105	broad.mit.edu	37	chr20	56138123	56138123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgcaacccggagctgaCgctcatcgcccacctgcctg	10	19	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56138123	A	A	56138123	3	1	151	1	0	0	0	0	1	0	0	0	11675	536	19	3	664	3	PCK1	20	56138123	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	39916	56138123	6887397	1598	131085											
ZNF831	128611	broad.mit.edu	37	chr20	57766799	57766799	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggatgcacgaaggcgcctCggagagacccctttctccgg	15	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57766799	T	T	57766799	3	4	151	1	0	0	0	0	1	0	0	0	18314	893	31	4	727	4	ZNF831	20	57766799	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1628676	57766799	5258721	1599	131086											
ZNF831	128611	broad.mit.edu	37	chr20	57768672	57768672	+	Frame_Shift_Del	DEL	A	-	-													gccgatcccggggaggtgccAgggggctcaaaggagagtgc							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57768672	-	-	57768672	7	5	151	1	0	1	0	1	0	0	0	0	18314	175	7	0	2600	0	ZNF831	20	57768672	Frame_Shift_Del	DEL	A	TCGA-50-5049-01A-01D-1625-08	1873	57768672	5256848	1600	131087											
PHACTR3	116154	broad.mit.edu	37	chr20	58330469	58330469	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcctagaatggccataCgtccccactgttgtccttgg	9	14	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58330469	G	G	58330469	1	3	151	0	1	0	0	0	0	0	0	0	11906	551	19	4		4	PHACTR3	20	58330469	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	561797	58330469	4695051	1601	131088											
PHACTR3	116154	broad.mit.edu	37	chr20	58348388	58348388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgccgacccttccctccGgggccagctctccacaccca	9	20	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58348388	T	T	58348388	3	4	151	1	0	0	0	0	1	0	0	0	11906	1116	39	1	828	1	PHACTR3	20	58348388	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	17919	58348388	4677132	1602	131089											
TAF4	6874	broad.mit.edu	37	chr20	60551211	60551211	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatatataaaaagtccccagGcgtcctcctgtgtcacttaa	6	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60551211	C	C	60551211	1	2	151	0	1	0	0	0	0	0	0	0	15645	1218	42	4		4	TAF4	20	60551211	3'UTR	SNP	G	TCGA-50-5049-01A-01D-1625-08	2202823	60551211	2474309	1603	131090											
LAMA5	3911	broad.mit.edu	37	chr20	60884947	60884948	+	Intron	INS	-	C	C													tcagcccagcctctctccagINSccccaaaagaagccacccca							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60884948	C	C	60884947	6	5	151	0	1	1	1	0	0	0	0	0	8681	986	34	0		0	LAMA5	20	60884947	Intron	INS	-	TCGA-50-5049-01A-01D-1625-08	333736	60884947	2140573	1604	131091											
NTSR1	4923	broad.mit.edu	37	chr20	61386226	61386226	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggccctgcggcacggcGtgcgcgtcctacgtacgtaa	13	15	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61386226	T	T	61386226	3	4	151	1	0	0	0	0	1	0	0	0	10805	1145	40	3	910	3	NTSR1	20	61386226	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	501279	61386226	1639294	1605	131092											
TCFL5	10732	broad.mit.edu	37	chr20	61490633	61490633	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtacaaaccatctgtctcCcctgccccccaaggccaaaa	6	17	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61490633	G	G	61490633	1	3	151	0	1	0	0	0	0	0	0	0	15821	638	22	4		4	TCFL5	20	61490633	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	104407	61490633	1534887	1606	131093											
DIDO1	11083	broad.mit.edu	37	chr20	61525743	61525743	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttagtctcagctccaaggctCcatcccctgcactgtgctca	7	16	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61525743	G	G	61525743	1	3	151	0	1	0	0	0	0	0	0	0	4562	870	30	4		4	DIDO1	20	61525743	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	35110	61525743	1499777	1607	131094											
SLC17A9	63910	broad.mit.edu	37	chr20	61595779	61595779	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcagcacacggagagctggGacagaggggcacttctttcc	13	11	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61595779	T	T	61595779	1	4	151	0	1	0	0	0	0	0	0	0	14537	1189	41	3		3	SLC17A9	20	61595779	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	70036	61595779	1429741	1608	131095											
COL20A1	57642	broad.mit.edu	37	chr20	61959359	61959359	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagtgaggctgagatctTtggctcacttgggatctcct	13	8	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61959359	A	A	61959359	1	1	151	0	1	0	0	0	0	0	0	0	3711	1856	64	5		5	COL20A1	20	61959359	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	363580	61959359	1066161	1609	131096											
KCNQ2	3785	broad.mit.edu	37	chr20	62077990	62077990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagacatggccagagctGgggctgggggcgtcagaggc	18	9	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62077990	T	T	62077990	1	4	151	0	1	0	0	0	0	0	0	0	8153	1363	47	2		2	KCNQ2	20	62077990	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	118631	62077990	947530	1610	131097											
TPTE	7179	broad.mit.edu	37	chr21	10933919	10933919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatccactcatttacttcCttggtgaaaaccaccatctg	5	14	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10933919	A	A	10933919	3	1	151	1	0	0	0	0	1	0	0	0	16554	680	24	2	727	2	TPTE	21	10933919	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08		10933919	37195976	1611	131098											
HSPA13	6782	broad.mit.edu	37	chr21	15750613	15750613	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attggcaactggcattccaaGatatgcctctgccatttcct	7	12	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15750613	A	A	15750613	3	1	151	1	0	0	0	0	1	0	0	0	7475	942	33	4	940	4	HSPA13	21	15750613	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4816694	15750613	32379282	1612	131099											
TMPRSS15	5651	broad.mit.edu	37	chr21	19704508	19704509	+	Intron	DNP	GG	TT	TT													ccgctgaaaaggaaagcaatGggaaatcatcagtaatacaa							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	19704509	TT	TT	19704508	1	4	151	0	1	0	0	0	0	0	0	0	16369	1363	47	2		2	TMPRSS15	21	19704508	Intron	DNP	GG	TCGA-50-5049-01A-01D-1625-08	3953895	19704508	28425387	1613	131100											
NCAM2	4685	broad.mit.edu	37	chr21	22656612	22656612	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaaggtgttaggtcaCggttaaccatctacaatgca	10	7	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22656612	G	G	22656612	3	3	151	1	0	0	0	0	1	0	0	0	10298	527	19	4	239	4	NCAM2	21	22656612	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2952104	22656612	25473283	1614	131101											
NCAM2	4685	broad.mit.edu	37	chr21	22841100	22841100	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaatacattgtgaaatataGaagtgtaagtaccttgttta	9	3	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22841100	A	A	22841100	3	1	151	1	0	0	0	0	1	0	0	0	10298	942	33	4	1946	4	NCAM2	21	22841100	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	184488	22841100	25288795	1615	131102											
ADAMTS5	11096	broad.mit.edu	37	chr21	28306945	28306945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagcacagacatccatgCcgggacacacggagtactca	12	13	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28306945	A	A	28306945	3	1	151	1	0	0	0	0	1	0	0	0	269	739	26	3	1283	3	ADAMTS5	21	28306945	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5465845	28306945	19822950	1616	131103											
KRTAP23-1	337963	broad.mit.edu	37	chr21	31720933	31720933	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgtaggacatgttgacagGagatgtgagttcagctgagc	15	5	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31720933	T	T	31720933	1	4	151	0	1	0	0	0	0	0	0	0	8613	1189	41	3		3	KRTAP23-1	21	31720933	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	3413988	31720933	16408962	1617	131104											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31797994	31797994	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtcctggggtagtagcaGgaggtgtggcaggggctgga	21	5	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31797994	T	T	31797994	2	4	151	1	0	0	0	0	0	0	0	1	8595	987	35	2		2	KRTAP13-3	21	31797994	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	77061	31797994	16331901	1618	131105											
KRTAP13-4	284827	broad.mit.edu	37	chr21	31802608	31802608	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcatgtcctacaactgCtgctctagaaacttctcctc	5	14	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31802608	A	A	31802608	4	1	151	1	0	0	0	0	0	1	0	0	8596	805	28	3	17	3	KRTAP13-4	21	31802608	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4614	31802608	16327287	1619	131106											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253916	32253916	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatgtcactccagactcctGagcttttatatatccttgct	6	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32253916	T	T	32253916	1	4	151	0	1	0	0	0	0	0	0	0	8588	1305	45	3		3	KRTAP11-1	21	32253916	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	451308	32253916	15875979	1620	131107											
TIAM1	7074	broad.mit.edu	37	chr21	32526814	32526814	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacgcacctgacacctggacCgcctagaggtgttctccctg	11	15	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32526814	G	G	32526814	1	3	151	0	1	0	0	0	0	0	0	0	16013	667	23	4		4	TIAM1	21	32526814	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	272898	32526814	15603081	1621	131108											
TIAM1	7074	broad.mit.edu	37	chr21	32582356	32582356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacaacccaaagcagctcCataccttgcaaatcagctcc	5	15	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32582356	A	A	32582356	1	1	151	0	1	0	0	0	0	0	0	0	16013	609	21	2		2	TIAM1	21	32582356	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	55542	32582356	15547539	1622	131109											
C21orf59	56683	broad.mit.edu	37	chr21	33974319	33974319	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttattcaggcaggcatttCaggaaagtgttttgcacata	9	6	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33974319	A	A	33974319	1	1	151	0	1	0	0	0	0	0	0	0	2152	841	29	3		3	C21orf59	21	33974319	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	1391963	33974319	14155576	1623	131110											
SYNJ1	8867	broad.mit.edu	37	chr21	34072116	34072116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctgaacatattatgtcCcaaatcaccaaaagggaaaa	6	9	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34072116	A	A	34072116	1	1	151	0	1	0	0	0	0	0	0	0	15571	638	22	2		2	SYNJ1	21	34072116	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	97797	34072116	14057779	1624	131111											
BRWD1	54014	broad.mit.edu	37	chr21	40568393	40568393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtctttgacgtctcacaGttttagatatgttagctgta	8	6	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40568393	A	A	40568393	1	1	151	0	1	0	0	0	0	0	0	0	1534	1029	36	4		4	BRWD1	21	40568393	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	6496277	40568393	7561502	1625	131112											
DSCAM	1826	broad.mit.edu	37	chr21	41647902	41647902	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttaaacccagctatatcAcaccaacgggtcttcttttg	5	12	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41647902	G	G	41647902	1	3	151	0	1	0	0	0	0	0	0	0	4808	174	6	5		5	DSCAM	21	41647902	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1079509	41647902	6481993	1626	131113											
ABCG1	9619	broad.mit.edu	37	chr21	43645891	43645891	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagacggacctgctgaatggAcatctgaaaaaagtagataa	11	6	1	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43645891	T	T	43645891	2	4	151	1	0	0	0	0	0	0	0	1	68	262	10	5		5	ABCG1	21	43645891	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	1997989	43645891	4484004	1627	131114											
CCT8L2	150160	broad.mit.edu	37	chr22	17072912	17072913	+	Missense_Mutation	DNP	TG	AT	AT													cagcttggtcaagtggtccaTgggggacagggtgtgggtat							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	17072913	AT	AT	17072912	3	1	151	1	0	0	0	0	1	0	0	0	2991	1464	51	5	1148	5	CCT8L2	22	17072912	Missense_Mutation	DNP	TG	TCGA-50-5049-01A-01D-1625-08		17072912	34231654	1628	131115											
TBX1	6899	broad.mit.edu	37	chr22	19750871	19750871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgataagcgctaccggtgagCgagtggttgtaagcgtgagg	17	7	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19750871	T	T	19750871	1	4	151	0	1	0	0	0	0	0	0	0	15772	783	27	4		4	TBX1	22	19750871	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2677959	19750871	31553695	1629	131116											
DGCR8	54487	broad.mit.edu	37	chr22	20074603	20074603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacctcctttctgtgtctGttctcaggaatgctgttgag	10	10	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20074603	T	T	20074603	1	4	151	0	1	0	0	0	0	0	0	0	4504	1392	48	3		3	DGCR8	22	20074603	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	323732	20074603	31229963	1630	131117											
MYO18B	84700	broad.mit.edu	37	chr22	26343831	26343831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggaagaagctcagggaCttggggtggggtgaatgggg	22	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26343831	A	A	26343831	1	1	151	0	1	0	0	0	0	0	0	0	10160	580	20	3		3	MYO18B	22	26343831	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	6269228	26343831	24960735	1631	131118											
C22orf31	25770	broad.mit.edu	37	chr22	29456675	29456675	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtggtagctggtgctgGggcattaatgttctgctttg	16	5	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29456675	T	T	29456675	3	4	151	1	0	0	0	0	1	0	0	0	2165	1232	43	2	720	2	C22orf31	22	29456675	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3112844	29456675	21847891	1632	131119											
RNF215	200312	broad.mit.edu	37	chr22	30782716	30782716	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgcaatccagccttccacTggtgcctcctgctcggcatc	8	17	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30782716	A	A	30782716	2	1	151	1	0	0	0	0	0	0	0	1	13590	1567	55	5		5	RNF215	22	30782716	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	1326041	30782716	20521850	1633	131120											
GAL3ST1	9514	broad.mit.edu	37	chr22	30951023	30951023	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccatcaggtactggatctCgggcgtgagcatgcgccggc	15	12	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30951023	A	A	30951023	4	1	151	1	0	0	0	0	0	1	0	0	6259	893	31	3	86	3	GAL3ST1	22	30951023	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	168307	30951023	20353543	1634	131121											
PATZ1	23598	broad.mit.edu	37	chr22	31722987	31722987	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactcgaggagagacatgtTctgctgaggagagaaaggtg	17	5	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31722987	A	A	31722987	3	1	151	1	0	0	0	0	1	0	0	0	11570	1783	62	5	113	5	PATZ1	22	31722987	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	771964	31722987	19581579	1635	131122											
C22orf28	51493	broad.mit.edu	37	chr22	32808252	32808252	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaagcgcaggcgcgacCagcgccgcagcagatgagca	13	14	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32808252	A	A	32808252	1	1	151	0	1	0	0	0	0	0	0	0	2162	609	21	2		2	C22orf28	22	32808252	5'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	1085265	32808252	18496314	1636	131123											
IL2RB	3560	broad.mit.edu	37	chr22	37524495	37524495	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggggccaccgaggagacTgggggagaagagcagcaggt	20	8	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37524495	G	G	37524495	3	3	151	1	0	0	0	0	1	0	0	0	7757	1580	55	5	362	5	IL2RB	22	37524495	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	4716243	37524495	13780071	1637	131124											
APOBEC3H	164668	broad.mit.edu	37	chr22	39498047	39498047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacggcttgagaggataaaGgtgaggcactgtcctgcctg	15	9	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39498047	T	T	39498047	3	4	151	1	0	0	0	0	1	0	0	0	797	1014	35	2	553	2	APOBEC3H	22	39498047	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1973552	39498047	11806519	1638	131125											
TAB1	10454	broad.mit.edu	37	chr22	39777674	39777674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccccctcccgcctgtcCttgtcctcgccggcctttgt	7	21	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39777674	A	A	39777674	1	1	151	0	1	0	0	0	0	0	0	0	15614	696	24	2		2	TAB1	22	39777674	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	279627	39777674	11526892	1639	131126											
CACNA1I	8911	broad.mit.edu	37	chr22	40054082	40054082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagggtcacacagccaggGtgggtgtccagaggggatcc	17	11	1	1	rs12169701	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40054082	T	T	40054082	1	4	151	0	1	0	0	0	0	0	0	0	2572	1276	44	3		3	CACNA1I	22	40054082	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	276408	40054082	11250484	1640	131127											
GRAP2	9402	broad.mit.edu	37	chr22	40367050	40367050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcacaacaagctgggcCtcttccctgccaactacgtg	9	16	1	0	rs12759		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40367050	T	T	40367050	3	4	151	1	0	0	0	0	1	0	0	0	6820	681	24	4	981	4	GRAP2	22	40367050	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	312968	40367050	10937516	1641	131128											
MEI1	150365	broad.mit.edu	37	chr22	42154566	42154566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaggtgggtggctggtgGtgggtcttgggaccttcatc	18	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42154566	T	T	42154566	1	4	151	0	1	0	0	0	0	0	0	0	9558	1276	44	3		3	MEI1	22	42154566	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1787516	42154566	9150000	1642	131129											
NFAM1	150372	broad.mit.edu	37	chr22	42783046	42783046	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagctgccatcctcattctcGatgcaggcatagacctcggt	10	13	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42783046	C	C	42783046	3	2	151	1	0	0	0	0	1	0	0	0	10453	1048	37	4	118	4	NFAM1	22	42783046	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	628480	42783046	8521520	1643	131130											
PHF21B	112885	broad.mit.edu	37	chr22	45312390	45312390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttggcggtggggagggCtgggctggggttcttgacgc	22	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45312390	A	A	45312390	3	1	151	1	0	0	0	0	1	0	0	0	11929	797	28	3	1301	3	PHF21B	22	45312390	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	2529344	45312390	5992176	1644	131131											
FBLN1	2192	broad.mit.edu	37	chr22	45929024	45929024	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtgggctaccagctgctgtCtgatggtgtctcctgtgaag	14	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45929024	G	G	45929024	3	3	151	1	0	0	0	0	1	0	0	0	5755	913	32	4	648	4	FBLN1	22	45929024	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	616634	45929024	5375542	1645	131132											
TRMU	55687	broad.mit.edu	37	chr22	46747957	46747957	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcccgctcaggacgtctGggtacagcttgggccaccgc	15	14	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46747957	A	A	46747957	1	1	151	0	1	0	0	0	0	0	0	0	16696	1363	47	4		4	TRMU	22	46747957	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	818933	46747957	4556609	1646	131133											
CELSR1	9620	broad.mit.edu	37	chr22	46760393	46760393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcctttcactgcagcccCggcctccccaggcacctttc	7	21	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46760393	A	A	46760393	1	1	151	0	1	0	0	0	0	0	0	0	3251	667	23	1		1	CELSR1	22	46760393	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	12436	46760393	4544173	1647	131134											
BRD1	23774	broad.mit.edu	37	chr22	50170839	50170839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagcagagggagtcaggCgccccgcccctgccttcagc	14	15	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50170839	A	A	50170839	1	1	151	0	1	0	0	0	0	0	0	0	1510	783	27	3		3	BRD1	22	50170839	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	3410446	50170839	1133727	1648	131135											
TUBGCP6	85378	broad.mit.edu	37	chr22	50659383	50659383	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctggcgttggacacgtgCccgtgggtattccaccgtgg	15	11	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50659383	A	A	50659383	2	1	151	1	0	0	0	0	0	0	0	1	16896	726	26	3		3	TUBGCP6	22	50659383	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	488544	50659383	645183	1649	131136											
ASMT	438	broad.mit.edu	37	chrX	1748721	1748721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcatgccaggtccgagGgcgagcggctacagttcatg	14	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1748721	T	T	1748721	3	4	151	1	0	0	0	0	1	0	0	0	1049	1232	43	2	469	2	ASMT	23	1748721	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08		1748721	153521839	1650	131137											
ZBED1	9189	broad.mit.edu	37	chrX	2407023	2407023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcgttgaggccaagcaCcttctgggacttgaagttgc	12	10	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2407023	A	A	2407023	3	1	151	1	0	0	0	0	1	0	0	0	17644	507	18	3	350	3	ZBED1	23	2407023	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	658302	2407023	152863537	1651	131138											
MXRA5	25878	broad.mit.edu	37	chrX	3239784	3239784	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgtgggtttatatgtgacTggaagtgtctcttggacttt	13	4	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3239784	A	A	3239784	2	1	151	1	0	0	0	0	0	0	0	1	10097	1567	55	5		5	MXRA5	23	3239784	Silent	SNP	T	TCGA-50-5049-01A-01D-1625-08	832761	3239784	152030776	1652	131139											
NLGN4X	57502	broad.mit.edu	37	chrX	5947504	5947504	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagccaagtaaggaaacacaAtaaagaatcacactgactca	6	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5947504	G	G	5947504	1	3	151	0	1	0	0	0	0	0	0	0	10559	116	4	5		5	NLGN4X	23	5947504	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	2707720	5947504	149323056	1653	131140											
AMELX	265	broad.mit.edu	37	chrX	11316810	11316810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcagcagcccgtgatccCccagcaaccaatgatgcccg	9	17	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11316810	T	T	11316810	3	4	151	1	0	0	0	0	1	0	0	0	569	623	22	4	347	4	AMELX	23	11316810	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5369306	11316810	143953750	1654	131141											
TLR7	51284	broad.mit.edu	37	chrX	12905856	12905856	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctgacgaagtattttctAcaagatgccttccagttgcg	9	9	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12905856	T	T	12905856	2	4	151	1	0	0	0	0	0	0	0	1	16079	378	14	5		5	TLR7	23	12905856	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	1589046	12905856	142364704	1655	131142											
TLR8	51311	broad.mit.edu	37	chrX	12940186	12940186	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcctgacaacccgaaGgcagaaggcttgttttggca	13	10	0	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12940186	A	A	12940186	2	1	151	1	0	0	0	0	0	0	0	1	16080	991	35	4		4	TLR8	23	12940186	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	34330	12940186	142330374	1656	131143											
EGFL6	25975	broad.mit.edu	37	chrX	13641992	13641992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatcatgggatctgtgactgGaaacaggatagagaagatga	13	4	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13641992	T	T	13641992	3	4	151	1	0	0	0	0	1	0	0	0	5003	1183	41	3	1274	3	EGFL6	23	13641992	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	701806	13641992	141628568	1657	131144											
GLRA2	2742	broad.mit.edu	37	chrX	14625379	14625379	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttggctactgtacaaagcActacaacactggtaagtttc	7	10	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14625379	G	G	14625379	3	3	151	1	0	0	0	0	1	0	0	0	6519	159	6	5	798	5	GLRA2	23	14625379	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	983387	14625379	140645181	1658	131145											
EIF1AX	1964	broad.mit.edu	37	chrX	20156717	20156717	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcattctcattcttaccccTgcgtctgtttttacctcctt	3	14	4	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20156717	A	A	20156717	3	1	151	1	0	0	0	0	1	0	0	0	5032	1579	55	5	418	5	EIF1AX	23	20156717	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	5531338	20156717	135113843	1659	131146											
DMD	1756	broad.mit.edu	37	chrX	32862918	32862918	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattattgttctgcaaaacCcgcagtgccttgttgacatt	7	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32862918	A	A	32862918	2	1	151	1	0	0	0	0	0	0	0	1	4620	610	22	2		2	DMD	23	32862918	Silent	SNP	C	TCGA-50-5049-01A-01D-1625-08	12706201	32862918	122407642	1660	131147											
FAM47C	442444	broad.mit.edu	37	chrX	37027104	37027104	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctcccaagactccggtGtccagtctccgcccggagcc	11	18	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37027104	T	T	37027104	2	4	151	1	0	0	0	0	0	0	0	1	5622	1364	48	3		3	FAM47C	23	37027104	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	4164186	37027104	118243456	1661	131148											
PRRG1	5638	broad.mit.edu	37	chrX	37312649	37312649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttgacagcagtggattGtctccaggctttctgggata	13	7	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37312649	T	T	37312649	3	4	151	1	0	0	0	0	1	0	0	0	12711	1368	48	3	524	3	PRRG1	23	37312649	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	285545	37312649	117957911	1662	131149											
RPGR	6103	broad.mit.edu	37	chrX	38136076	38136076	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagattttcttgttaaaaaaCgagggatttgatattgctgt	9	3	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38136076	A	A	38136076	1	1	151	0	1	0	0	0	0	0	0	0	13659	551	19	3		3	RPGR	23	38136076	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	823427	38136076	117134484	1663	131150											
NYX	60506	broad.mit.edu	37	chrX	41333679	41333679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggtcgccttccagcccGgcttcttcctgggccgcctc	11	19	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41333679	T	T	41333679	3	4	151	1	0	0	0	0	1	0	0	0	10892	1116	39	1	979	1	NYX	23	41333679	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	3197603	41333679	113936881	1664	131151											
SSX1	6756	broad.mit.edu	37	chrX	48117318	48117318	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacagaaagttctaggaacaGacaagtctggggatacatga	11	6	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48117318	T	T	48117318	1	4	151	0	1	0	0	0	0	0	0	0	15321	957	33	3		3	SSX1	23	48117318	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	6783639	48117318	107153242	1665	131152											
HDAC6	10013	broad.mit.edu	37	chrX	48678440	48678440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccttttctccatgtctctGggtcgccatcacttactgcc	7	15	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48678440	T	T	48678440	1	4	151	0	1	0	0	0	0	0	0	0	7078	1363	47	2		2	HDAC6	23	48678440	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	561122	48678440	106592120	1666	131153											
CCNB3	85417	broad.mit.edu	37	chrX	50094330	50094330	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgctgactttcagttctTacgatagtctcaaggctgtg	9	9	3	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50094330	C	C	50094330	3	2	151	1	0	0	0	0	1	0	0	0	2944	1754	61	5	4089	5	CCNB3	23	50094330	Missense_Mutation	SNP	T	TCGA-50-5049-01A-01D-1625-08	1415890	50094330	105176230	1667	131154											
HUWE1	10075	broad.mit.edu	37	chrX	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-													gggccagggccggggccgggGccggggccggggccggggcc					rs78801842	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652829	6	5	151	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652829	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	TCGA-50-5049-01A-01D-1625-08	3558499	53652829	101617731	1668	131155											
ITIH5L	347365	broad.mit.edu	37	chrX	54817240	54817240	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattcagtgaaggccagtctGatgggtgacccatagtgctg	13	9	2	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54817240	T	T	54817240	1	4	151	0	1	0	0	0	0	0	0	0	7978	1305	45	3		3	ITIH5L	23	54817240	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1164411	54817240	100453320	1669	131156											
VSIG4	11326	broad.mit.edu	37	chrX	65253608	65253608	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggggtcataggtgcaGggaagattcacatccccttt	13	9	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65253608	T	T	65253608	2	4	151	1	0	0	0	0	0	0	0	1	17352	987	35	2		2	VSIG4	23	65253608	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	10436368	65253608	90016952	1670	131157											
HEPH	9843	broad.mit.edu	37	chrX	65486250	65486250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagagtactccccatccCaggatgcccatttttttttt	5	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65486250	A	A	65486250	1	1	151	0	1	0	0	0	0	0	0	0	7121	609	21	2		2	HEPH	23	65486250	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	232642	65486250	89784310	1671	131158											
KIF4A	24137	broad.mit.edu	37	chrX	69623846	69623846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatagagacagagttacaaGctgagctggtcagaatggag	14	5	1	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69623846	T	T	69623846	3	4	151	1	0	0	0	0	1	0	0	0	8373	971	34	3	2842	3	KIF4A	23	69623846	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4137596	69623846	85646714	1672	131159											
CDX4	1046	broad.mit.edu	37	chrX	72667056	72667056	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggccttacagggacttcagGatggcttagggagcgccttc	15	10	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667056	A	A	72667056	1	1	151	0	1	0	0	0	0	0	0	0	3214	1189	41	4		4	CDX4	23	72667056	5'Flank	SNP	G	TCGA-50-5049-01A-01D-1625-08	3043210	72667056	82603504	1673	131160											
KIAA2022	340533	broad.mit.edu	37	chrX	73961230	73961230	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggggtgaagttggatatAtccaggaggtcagtggactc	15	6	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73961230	T	T	73961230	3	4	151	1	0	0	0	0	1	0	0	0	8339	446	16	5	1396	5	KIAA2022	23	73961230	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	1294174	73961230	81309330	1674	131161											
POF1B	79983	broad.mit.edu	37	chrX	84570664	84570664	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attattgcaaatatcagaatCtactttgttattatactata	3	5	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84570664	A	A	84570664	1	1	151	0	1	0	0	0	0	0	0	0	12277	928	32	3		3	POF1B	23	84570664	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	10609434	84570664	70699896	1675	131162											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177796	89177796	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagctagagaagaagcaaGagcctaatccatgattgatg	12	6	0	5			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177796	T	T	89177796	4	4	151	1	0	0	0	0	0	1	0	0	15950	943	33	3	714	3	TGIF2LX	23	89177796	Nonsense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	4607132	89177796	66092764	1676	131163											
PCDH11X	27328	broad.mit.edu	37	chrX	91134011	91134011	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtacaattgggtaactacAcctactactttcaagcccga	6	11	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91134011	T	T	91134011	2	4	151	1	0	0	0	0	0	0	0	1	11602	146	6	5		5	PCDH11X	23	91134011	Silent	SNP	A	TCGA-50-5049-01A-01D-1625-08	1956215	91134011	64136549	1677	131164											
ZMAT1	84460	broad.mit.edu	37	chrX	101138771	101138771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttgccttcttctaggtgtCgttttctcttctgatgtttc	7	10	4	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101138771	A	A	101138771	3	1	151	1	0	0	0	0	1	0	0	0	17817	884	31	3	292	3	ZMAT1	23	101138771	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	10004760	101138771	54131789	1678	131165											
NXF3	56000	broad.mit.edu	37	chrX	102335170	102335170	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggcaagaggaagtcagtAgtgcaaagtagggaggtggc	18	4	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102335170	T	T	102335170	1	4	151	0	1	0	0	0	0	0	0	0	10880	435	15	5		5	NXF3	23	102335170	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1196399	102335170	52935390	1679	131166											
TCEAL8	90843	broad.mit.edu	37	chrX	102508698	102508698	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttatcatttcttcagggtcCaaatgcctaacgggtgtgtc	9	10	3	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102508698	G	G	102508698	3	3	151	1	0	0	0	0	1	0	0	0	15799	593	21	4	147	4	TCEAL8	23	102508698	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	173528	102508698	52761862	1680	131167											
PLP1	5354	broad.mit.edu	37	chrX	103041621	103041621	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttggagcgggtgtgtcAttgtttgggaaaatggctag	15	4	2	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103041621	G	G	103041621	3	3	151	1	0	0	0	0	1	0	0	0	12199	217	8	5	429	5	PLP1	23	103041621	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	532923	103041621	52228939	1681	131168											
VSIG1	340547	broad.mit.edu	37	chrX	107315961	107315961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaccagaaactggccacaCtatttccctttcctgtctct	5	14	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107315961	A	A	107315961	3	1	151	1	0	0	0	0	1	0	0	0	17349	565	20	3	593	3	VSIG1	23	107315961	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	4274340	107315961	47954599	1682	131169											
GUCY2F	2986	broad.mit.edu	37	chrX	108631743	108631743	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaggccaattcgaattcgGaccggcacttctggcatgtg	12	10	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108631743	T	T	108631743	2	4	151	1	0	0	0	0	0	0	0	1	6963	1161	41	3		3	GUCY2F	23	108631743	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	1315782	108631743	46638817	1683	131170											
CAPN6	827	broad.mit.edu	37	chrX	110494471	110494471	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcagacataacaagccccaGgttcttgcgatctgatgcag	9	11	3	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110494471	C	C	110494471	3	2	151	1	0	0	0	0	1	0	0	0	2656	991	35	4	1016	4	CAPN6	23	110494471	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	1862728	110494471	44776089	1684	131171											
TRPC5	7224	broad.mit.edu	37	chrX	111155830	111155830	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagccttatagatgttcaGtcgggagcgagagtggcgca	15	8	1	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111155830	A	A	111155830	2	1	151	1	0	0	0	0	0	0	0	1	16707	1020	36	4		4	TRPC5	23	111155830	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	661359	111155830	44114730	1685	131172											
HTR2C	3358	broad.mit.edu	37	chrX	114141823	114141823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccgccactgctttgtctGggagggagcttaatgttaac	12	9	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114141823	T	T	114141823	3	4	151	1	0	0	0	0	1	0	0	0	7513	1348	47	2	1236	2	HTR2C	23	114141823	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	2985993	114141823	41128737	1686	131173											
XPNPEP2	7512	broad.mit.edu	37	chrX	128886336	128886336	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaggtgggtttgccaggCcccagcccaagccaggcacc	12	17	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128886336	T	T	128886336	1	4	151	0	1	0	0	0	0	0	0	0	17570	754	26	4		4	XPNPEP2	23	128886336	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	14744513	128886336	26384224	1687	131174											
BCORL1	63035	broad.mit.edu	37	chrX	129147031	129147031	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaagacaagcctgacgatCcccagccaaaaatggactac	8	13	0	3			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129147031	T	T	129147031	3	4	151	1	0	0	0	0	1	0	0	0	1392	855	30	4	293	4	BCORL1	23	129147031	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	260695	129147031	26123529	1688	131175											
ARHGAP36	158763	broad.mit.edu	37	chrX	130219600	130219600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttctgccctgcagttgCtggtctacctgatgccaccc	9	15	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130219600	A	A	130219600	3	1	151	1	0	0	0	0	1	0	0	0	885	796	28	3	1020	3	ARHGAP36	23	130219600	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	1072569	130219600	25050960	1689	131176											
IGSF1	3547	broad.mit.edu	37	chrX	130423167	130423167	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattcagccactgaactatgCgctcatttgtaggtacttac	7	10	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130423167	G	G	130423167	1	3	151	0	1	0	0	0	0	0	0	0	7666	783	27	4		4	IGSF1	23	130423167	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	203567	130423167	24847393	1690	131177											
SLC9A6	10479	broad.mit.edu	37	chrX	135098852	135098852	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatttcatcttctcctacAtggggctgacactgttcacc	7	12	4	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135098852	G	G	135098852	3	3	151	1	0	0	0	0	1	0	0	0	14832	217	8	5	1323	5	SLC9A6	23	135098852	Missense_Mutation	SNP	A	TCGA-50-5049-01A-01D-1625-08	4675685	135098852	20171708	1691	131178											
GPR112	139378	broad.mit.edu	37	chrX	135405537	135405537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcatcccaactgttgacaGgacactgcgctgctgtgagt	11	11	1	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135405537	T	T	135405537	3	4	151	1	0	0	0	0	1	0	0	0	6694	1000	35	2	677	2	GPR112	23	135405537	Missense_Mutation	SNP	G	TCGA-50-5049-01A-01D-1625-08	306685	135405537	19865023	1692	131179											
GPR112	139378	broad.mit.edu	37	chrX	135431491	135431491	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgacatctagtaataccCaacctctgcttatgacttcc	5	12	2	2			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135431491	T	T	135431491	4	4	151	1	0	0	0	0	0	1	0	0	6694	595	21	4	5636	4	GPR112	23	135431491	Nonsense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	25954	135431491	19839069	1693	131180											
BRS3	680	broad.mit.edu	37	chrX	135574072	135574073	+	Intron	INS	-	TTTTT	TTTTT													tgttgttgttgttttttgtgINStttttttttttttttttttt					rs12843053		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTTTT	135574073	TTTTT	TTTTT	135574072	6	5	151	0	1	1	1	0	0	0	0	0	1531	1392	48	0		0	BRS3	23	135574072	Intron	INS	-	TCGA-50-5049-01A-01D-1625-08	142581	135574072	19696488	1694	131181											
ZIC3	7547	broad.mit.edu	37	chrX	136651239	136651239	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaggtaattacctctttAttagcggtcggcggtttgta	11	6	1	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136651239	G	G	136651239	1	3	151	0	1	0	0	0	0	0	0	0	17806	464	16	5		5	ZIC3	23	136651239	Intron	SNP	A	TCGA-50-5049-01A-01D-1625-08	1077167	136651239	18619321	1695	131182											
MCF2	4168	broad.mit.edu	37	chrX	138701681	138701681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataataagggtttatactacCtactcccgccaaaacatgac	5	11	0	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138701681	A	A	138701681	1	1	151	0	1	0	0	0	0	0	0	0	9471	696	24	2		2	MCF2	23	138701681	Intron	SNP	C	TCGA-50-5049-01A-01D-1625-08	2050442	138701681	16568879	1696	131183											
SPANXC	64663	broad.mit.edu	37	chrX	140358269	140358269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtccttgtactcggaagGccaggacatcttatcggcca	10	12	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140358269	T	T	140358269	1	4	151	0	1	0	0	0	0	0	0	0	15103	1218	42	3		3	SPANXC	23	140358269	Intron	SNP	G	TCGA-50-5049-01A-01D-1625-08	1656588	140358269	14912291	1697	131184											
MAGEC3	139081	broad.mit.edu	37	chrX	140983191	140983192	+	Missense_Mutation	DNP	AA	TT	TT													cttagacctggccaatcctcAaggtaagggccctaagggag							TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	140983192	TT	TT	140983191	3	4	151	1	0	0	0	0	1	0	0	0	9274	130	5	5	1064	5	MAGEC3	23	140983191	Missense_Mutation	DNP	AA	TCGA-50-5049-01A-01D-1625-08	624922	140983191	14287369	1698	131185											
SPANXN1	494118	broad.mit.edu	37	chrX	144337404	144337404	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgaaggatcttcaaagCaggatgaagacctagactta	10	8	2	4			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144337404	A	A	144337404	1	1	151	0	1	0	0	0	0	0	0	0	15106	725	25	3		3	SPANXN1	23	144337404	3'UTR	SNP	C	TCGA-50-5049-01A-01D-1625-08	3354213	144337404	10933156	1699	131186											
MAMLD1	10046	broad.mit.edu	37	chrX	149638713	149638713	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggtccaggccatgctcCctgtcgctctgcccccctta	9	19	1	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149638713	T	T	149638713	3	4	151	1	0	0	0	0	1	0	0	0	9300	623	22	4	878	4	MAMLD1	23	149638713	Missense_Mutation	SNP	C	TCGA-50-5049-01A-01D-1625-08	5301309	149638713	5631847	1700	131187											
PLXNB3	5365	broad.mit.edu	37	chrX	153041515	153041515	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgctggtggggcccggGgctggcggggccgcaggcag	23	10	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153041515	T	T	153041515	2	4	151	1	0	0	0	0	0	0	0	1	12220	1219	43	2		2	PLXNB3	23	153041515	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	3402802	153041515	2229045	1701	131188											
PDZD4	57595	broad.mit.edu	37	chrX	153070179	153070179	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccttgcaggccaaacttGcgcaggcttcccggggtgtt	12	14	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153070179	T	T	153070179	2	4	151	1	0	0	0	0	0	0	0	1	11797	1306	46	3		3	PDZD4	23	153070179	Silent	SNP	G	TCGA-50-5049-01A-01D-1625-08	28664	153070179	2200381	1702	131189											
TKTL1	8277	broad.mit.edu	37	chrX	153556105	153556105	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagctacctcctgtgcccTgagtgctctttttattttta	6	11	2	1			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153556105	C	C	153556105	1	2	151	0	1	0	0	0	0	0	0	0	16058	1595	55	5		5	TKTL1	23	153556105	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	485926	153556105	1714455	1703	131190											
IL9R	3581	broad.mit.edu	37	chrX	155231224	155231224	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggactgtcctatgggtaccTgtatacgctgccgggagtgg	16	9	0	0			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155231224	C	C	155231224	1	2	151	0	1	0	0	0	0	0	0	0	7778	1595	55	5		5	IL9R	23	155231224	Intron	SNP	T	TCGA-50-5049-01A-01D-1625-08	1675119	155231224	39336	1704	131191											
DDI2	84301	broad.mit.edu	37	chr1	15956966	15956966	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacaatccagccttgctcCgagatatgttgctggccaac	10	12	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15956966	T	T	15956966	4	4	152	1	0	0	0	0	0	1	0	0	4362	644	23	4	425	4	DDI2	1	15956966	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08		15956966	233293655	1	131192											
SPEN	23013	broad.mit.edu	37	chr1	16257686	16257686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtaactctagaatcagccCcatcagcactagagaagacc	7	13	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16257686	A	A	16257686	3	1	152	1	0	0	0	0	1	0	0	0	15156	623	22	2	4993	2	SPEN	1	16257686	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	300720	16257686	232992935	2	131193											
RAP1GAP	5909	broad.mit.edu	37	chr1	21944580	21944580	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcggatggggccctggcctCatcacctcttacagatgggc	13	13	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21944580	A	A	21944580	1	1	152	0	1	0	0	0	0	0	0	0	13145	841	29	3		3	RAP1GAP	1	21944580	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	5686894	21944580	227306041	3	131194											
GPATCH3	63906	broad.mit.edu	37	chr1	27223852	27223852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctcaggctctccacaGgggctggctggtatatctgc	11	13	4	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27223852	T	T	27223852	2	4	152	1	0	0	0	0	0	0	0	1	6657	987	35	2		2	GPATCH3	1	27223852	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	5279272	27223852	222026769	4	131195											
LAPTM5	7805	broad.mit.edu	37	chr1	31211800	31211800	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gactcaccatgtggttcatgGacttgaagttgagataggtg	13	6	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31211800	A	A	31211800	3	1	152	1	0	0	0	0	1	0	0	0	8698	1174	41	4	307	4	LAPTM5	1	31211800	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	3987948	31211800	218038821	5	131196											
PUM1	9698	broad.mit.edu	37	chr1	31437374	31437374	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctataggtacagcctgaaTaacatgaggtatttacggaa	9	6	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31437374	G	G	31437374	1	3	152	0	1	0	0	0	0	0	0	0	12933	1421	49	5		5	PUM1	1	31437374	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	225574	31437374	217813247	6	131197											
SERINC2	347735	broad.mit.edu	37	chr1	31902013	31902013	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacaggtgacagggacatcCctgctccagcccattctgag	10	14	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31902013	T	T	31902013	1	4	152	0	1	0	0	0	0	0	0	0	14193	638	22	4		4	SERINC2	1	31902013	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	464639	31902013	217348608	7	131198											
KIAA0754	643314	broad.mit.edu	37	chr1	39880265	39880265	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgttctttttgggtctccCgggcttatagtttgtagtct	10	7	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39880265	A	A	39880265	1	1	152	0	1	0	0	0	0	0	0	0	8262	667	23	1		1	KIAA0754	1	39880265	3'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	7978252	39880265	209370356	8	131199											
HEYL	26508	broad.mit.edu	37	chr1	40092801	40092801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctcagtgaggcactccCgaaaaccaatgctccggaag	10	13	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40092801	A	A	40092801	3	1	152	1	0	0	0	0	1	0	0	0	7147	652	23	1	625	1	HEYL	1	40092801	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	212536	40092801	209157820	9	131200											
WDR65	149465	broad.mit.edu	37	chr1	43638521	43638521	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgaacagatcattatatttCcttcaggaaatcactgtgtg	7	7	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43638521	G	G	43638521	3	3	152	1	0	0	0	0	1	0	0	0	17443	855	30	4	99	4	WDR65	1	43638521	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3545720	43638521	205612100	10	131201											
MIER1	57708	broad.mit.edu	37	chr1	67450197	67450197	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actacaagctgttttataatAgtttgcaaatttaacttttt	4	5	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67450197	T	T	67450197	1	4	152	0	1	0	0	0	0	0	0	0	9673	435	15	5		5	MIER1	1	67450197	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	23811676	67450197	181800424	11	131202											
USP33	23032	broad.mit.edu	37	chr1	78187617	78187617	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgagacaacaaacctgaaaCatcattgatagaaaaaaaag	6	6	1	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78187617	G	G	78187617	1	3	152	0	1	0	0	0	0	0	0	0	17191	493	17	4		4	USP33	1	78187617	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	10737420	78187617	171063004	12	131203											
LPHN2	23266	broad.mit.edu	37	chr1	82188525	82188525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttttccaggtggctttcCtgggggaaatgcctggtaat	12	9	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82188525	A	A	82188525	1	1	152	0	1	0	0	0	0	0	0	0	9003	696	24	2		2	LPHN2	1	82188525	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	4000908	82188525	167062096	13	131204											
SAMD13	148418	broad.mit.edu	37	chr1	84815281	84815281	+	Intron	SNP	A	C	C													atccttgagcttttggactcAcatgttggctttaccttctg							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84815281	C	C	84815281	1	2	152	0	1	0	0	0	0	0	0	0	13929	174	6	5		5	SAMD13	1	84815281	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	2626756	84815281	164435340	14	131205	568	2									
SAMD13	148418	broad.mit.edu	37	chr1	84815288	84815288	+	Intron	DEL	G	-	-													agcttttggactcacatgttGgctttaccttctgcttccat							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84815288	-	-	84815288	6	5	152	0	1	1	0	1	0	0	0	0	13929	1363	47	0		0	SAMD13	1	84815288	Intron	DEL	G	TCGA-50-5051-01A-21D-1855-08	7	84815288	164435333	15	131206	568	2									
SPATA1	64173	broad.mit.edu	37	chr1	85031736	85031736	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttatgtaatatgatcacGtgtgcatattacgtcagatt	7	5	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85031736	A	A	85031736	1	1	152	0	1	0	0	0	0	0	0	0	15114	1160	40	4		4	SPATA1	1	85031736	3'UTR	SNP	G	TCGA-50-5051-01A-21D-1855-08	216448	85031736	164218885	16	131207											
COL11A1	1301	broad.mit.edu	37	chr1	103379284	103379284	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatgaagcaagatatatctCagtatcaataaatcacacta	4	7	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103379284	A	A	103379284	1	1	152	0	1	0	0	0	0	0	0	0	3699	841	29	3		3	COL11A1	1	103379284	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	18347548	103379284	145871337	17	131208											
SYCP1	6847	broad.mit.edu	37	chr1	115455691	115455691	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacttcacactgcaacaagCtttcactagaaaacaaagag	5	10	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115455691	G	G	115455691	3	3	152	1	0	0	0	0	1	0	0	0	15550	797	28	4	1637	4	SYCP1	1	115455691	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	12076407	115455691	133794930	18	131209											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874682	144874682	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagaaagtggaggctaccTgagtgactgggagaagcttt	14	8	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144874682	C	C	144874682	2	2	152	1	0	0	0	0	0	0	0	1	11737	1594	55	5		5	PDE4DIP	1	144874682	Silent	SNP	T	TCGA-50-5051-01A-21D-1855-08	29418991	144874682	104375939	19	131210											
CELF3	11189	broad.mit.edu	37	chr1	151681719	151681719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtgccatctggccccCggagcacagtgcactcgtcg	13	15	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151681719	A	A	151681719	3	1	152	1	0	0	0	0	1	0	0	0	3247	652	23	1	1050	1	CELF3	1	151681719	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	6807037	151681719	97568902	20	131211											
TCHHL1	126637	broad.mit.edu	37	chr1	152058113	152058113	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcattagggaaagctggTcagtgaagtcttcatccagg	13	8	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152058113	C	C	152058113	3	2	152	1	0	0	0	0	1	0	0	0	15823	1667	58	5	673	5	TCHHL1	1	152058113	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08	376394	152058113	97192508	21	131212											
HRNR	388697	broad.mit.edu	37	chr1	152191409	152191409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgggagactgccctgacCcagacccacgctggccgtgg	14	15	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152191409	A	A	152191409	3	1	152	1	0	0	0	0	1	0	0	0	7426	623	22	2	5860	2	HRNR	1	152191409	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	133296	152191409	97059212	22	131213											
CRTC2	200186	broad.mit.edu	37	chr1	153924991	153924991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccctggaaggcctgcccCatggcaaggggatagcagag	15	11	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153924991	A	A	153924991	1	1	152	0	1	0	0	0	0	0	0	0	3932	609	21	2		2	CRTC2	1	153924991	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1733582	153924991	95325630	23	131214											
SH2D2A	9047	broad.mit.edu	37	chr1	156779484	156779484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccccctctttctgcatcGggactggggcttgcccctgt	12	16	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156779484	T	T	156779484	3	4	152	1	0	0	0	0	1	0	0	0	14345	1116	39	1	498	1	SH2D2A	1	156779484	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	2854493	156779484	92471137	24	131215											
NTRK1	4914	broad.mit.edu	37	chr1	156836592	156836592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggttgcctaggccggggCgggggagccagatgtcaact	17	10	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156836592	A	A	156836592	1	1	152	0	1	0	0	0	0	0	0	0	10801	783	27	3		3	NTRK1	1	156836592	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	57108	156836592	92414029	25	131216											
IGSF8	93185	broad.mit.edu	37	chr1	160063787	160063787	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaactggtgcctcgggcAcagatcgcccaaaggacact	11	15	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160063787	C	C	160063787	3	2	152	1	0	0	0	0	1	0	0	0	7674	159	6	5	1240	5	IGSF8	1	160063787	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	3227195	160063787	89186834	26	131217											
TBX19	9095	broad.mit.edu	37	chr1	168262479	168262479	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactgctccttccctgaaaCccagttcatagccgtgactg	7	14	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168262479	T	T	168262479	3	4	152	1	0	0	0	0	1	0	0	0	15776	507	18	4	576	4	TBX19	1	168262479	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	8198692	168262479	80988142	27	131218											
SLC9A11	284525	broad.mit.edu	37	chr1	173506244	173506244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgtattcttcttaaccCttacatagccctcactatta	4	11	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173506244	A	A	173506244	1	1	152	0	1	0	0	0	0	0	0	0	14825	696	24	2		2	SLC9A11	1	173506244	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	5243765	173506244	75744377	28	131219											
FAM5B	57795	broad.mit.edu	37	chr1	177250606	177250606	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccagtcctccctgagggCtttcaattctaagctgccaa	8	13	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177250606	T	T	177250606	3	4	152	1	0	0	0	0	1	0	0	0	5644	797	28	4	2320	4	FAM5B	1	177250606	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3744362	177250606	72000015	29	131220											
C1orf125	126859	broad.mit.edu	37	chr1	179401537	179401537	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattgtaaacttggcattccGgacctacaactgaggcacat	9	10	0	1	rs148375054	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179401537	C	C	179401537	1	2	152	0	1	0	0	0	0	0	0	0	2013	1131	39	4		4	C1orf125	1	179401537	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	2150931	179401537	69849084	30	131221											
LHX4	89884	broad.mit.edu	37	chr1	180243618	180243618	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccatggctgggggaccCacctctgacatctccacagg	12	14	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180243618	A	A	180243618	2	1	152	1	0	0	0	0	0	0	0	1	8845	581	21	2		2	LHX4	1	180243618	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	842081	180243618	69007003	31	131222											
GLT25D2	23127	broad.mit.edu	37	chr1	183942764	183942764	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgccttaggggtgattcCgcaccagaaattagaataca	9	9	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183942764	A	A	183942764	4	1	152	1	0	0	0	0	0	1	0	0	6531	661	23	1	1303	1	GLT25D2	1	183942764	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3699146	183942764	65307857	32	131223											
DENND1B	163486	broad.mit.edu	37	chr1	197564419	197564419	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctagctactccatcaccCgtagctgtagactgcttctt	7	15	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197564419	A	A	197564419	2	1	152	1	0	0	0	0	0	0	0	1	4467	639	23	1		1	DENND1B	1	197564419	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	13621655	197564419	51686202	33	131224											
ETNK2	55224	broad.mit.edu	37	chr1	204103943	204103943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcagagctagttctacCgaggccctaatgtttaccaa	11	10	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204103943	A	A	204103943	1	1	152	0	1	0	0	0	0	0	0	0	5316	667	23	1		1	ETNK2	1	204103943	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	6539524	204103943	45146678	34	131225											
CR2	1380	broad.mit.edu	37	chr1	207644501	207644501	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgcaggctctatgtaagAgtttgtatcagtacaccctg	9	10	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207644501	C	C	207644501	1	2	152	0	1	0	0	0	0	0	0	0	3874	319	11	5		5	CR2	1	207644501	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	3540558	207644501	41606120	35	131226											
SYT14	255928	broad.mit.edu	37	chr1	210334260	210334260	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacgcagcatgaaaagaaAagagatgataggctggattt	11	5	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	210334260	C	C	210334260	3	2	152	1	0	0	0	0	1	0	0	0	15589	14	1	5	1771	5	SYT14	1	210334260	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	2689759	210334260	38916361	36	131227											
BPNT1	10380	broad.mit.edu	37	chr1	220246208	220246208	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atacatcttcttctttaataGcactgtactgcgatgggcat	7	9	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220246208	C	C	220246208	3	2	152	1	0	0	0	0	1	0	0	0	1503	971	34	4	633	4	BPNT1	1	220246208	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	9911948	220246208	29004413	37	131228											
LEFTY1	10637	broad.mit.edu	37	chr1	226110038	226110038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaacaggacgtcgctgtGcttcaccgtctccttgttgc	10	13	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226110038	T	T	226110038	3	4	152	1	0	0	0	0	1	0	0	0	8787	1319	46	3		3	LEFTY1	1	226110038	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	5863830	226110038	23140583	38	131229											
URB2	9816	broad.mit.edu	37	chr1	229794938	229794938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgacgtccagttcctgcGggcctcgctgcagccgggaa	14	15	0	1	rs138399002		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229794938	T	T	229794938	3	4	152	1	0	0	0	0	1	0	0	0	17151	1116	39	1	4503	1	URB2	1	229794938	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	3684900	229794938	19455683	39	131230											
RYR2	6262	broad.mit.edu	37	chr1	237804119	237804119	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgttacctagtagtccctttCctcggagagatatgtaataa	8	8	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237804119	A	A	237804119	1	1	152	0	1	0	0	0	0	0	0	0	13880	870	30	3		3	RYR2	1	237804119	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	8009181	237804119	11446502	40	131231											
FMN2	56776	broad.mit.edu	37	chr1	240372089	240372089	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtattagggaagtgttTaccttcaaactcgggaaaat	10	6	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240372089	C	C	240372089	1	2	152	0	1	0	0	0	0	0	0	0	6008	1769	61	5		5	FMN2	1	240372089	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	2567970	240372089	8878532	41	131232											
FMN2	56776	broad.mit.edu	37	chr1	240635748	240635749	+	Missense_Mutation	DNP	GG	TT	TT													taaaaccaagacatgactctGgaattgtaagtattactgat							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	240635749	TT	TT	240635748	3	4	152	1	0	0	0	0	1	0	0	0	6008	1349	47	2	5203	2	FMN2	1	240635748	Missense_Mutation	DNP	GG	TCGA-50-5051-01A-21D-1855-08	263659	240635748	8614873	42	131233											
RGS7	6000	broad.mit.edu	37	chr1	240975303	240975303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaatgcctcgtccatgcCaaaaccccatcgttttaccc	4	16	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240975303	A	A	240975303	3	1	152	1	0	0	0	0	1	0	0	0	13419	594	21	2	486	2	RGS7	1	240975303	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	339555	240975303	8275318	43	131234											
OR2G2	81470	broad.mit.edu	37	chr1	247752385	247752385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagacagaaagcattcGggacctgcttctcccacctg	10	14	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247752385	T	T	247752385	3	4	152	1	0	0	0	0	1	0	0	0	11092	1116	39	1	726	1	OR2G2	1	247752385	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	6777082	247752385	1498236	44	131235											
OR2L2	26246	broad.mit.edu	37	chr1	248202275	248202275	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagaagggaggaagaagGcctattcaacctgtagcacc	12	10	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248202275	T	T	248202275	3	4	152	1	0	0	0	0	1	0	0	0	11101	1203	42	3	708	3	OR2L2	1	248202275	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	449890	248202275	1048346	45	131236											
TTC32	130502	broad.mit.edu	37	chr2	20096878	20096878	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatcttccaaagcatcaTcaaaatatcctgtaccagaa	4	10	3	2	rs149286415		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20096878	A	A	20096878	3	1	152	1	0	0	0	0	1	0	0	0	16827	1435	50	5	133	5	TTC32	2	20096878	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08		20096878	223102495	46	131237											
APOB	338	broad.mit.edu	37	chr2	21229324	21229324	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaactgctcctttagcGgtagagtacagcattgaaga	11	8	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21229324	T	T	21229324	2	4	152	1	0	0	0	0	0	0	0	1	787	1103	39	1		1	APOB	2	21229324	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	1132446	21229324	221970049	47	131238											
LOC375190	375190	broad.mit.edu	37	chr2	24342625	24342625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtcatgctccagctacGtttttcaccatttcctgatt	7	11	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24342625	T	T	24342625	1	4	152	0	1	0	0	0	0	0	0	0	8956	1160	40	3		3	LOC375190	2	24342625	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	3113301	24342625	218856748	48	131239											
DNMT3A	1788	broad.mit.edu	37	chr2	25470841	25470841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaggagagcaggacGggaggagctggcagtggaag	22	4	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25470841	T	T	25470841	1	4	152	0	1	0	0	0	0	0	0	0	4716	1131	39	1		1	DNMT3A	2	25470841	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	1128216	25470841	217728532	49	131240											
HADHA	3030	broad.mit.edu	37	chr2	26438000	26438000	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagtaattgcaacttcttCtaggtattctattgtccgtt	6	7	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26438000	A	A	26438000	4	1	152	1	0	0	0	0	0	1	0	0	7009	922	32	3	1622	3	HADHA	2	26438000	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	967159	26438000	216761373	50	131241											
HADHA	3030	broad.mit.edu	37	chr2	26455076	26455076	+	Frame_Shift_Del	DEL	C	-	-													gctcctggtaaggcccccagCaaaacttcaggggtacctaa							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26455076	-	-	26455076	7	5	152	1	0	1	0	1	0	0	0	0	7009	709	25	0	1826	0	HADHA	2	26455076	Frame_Shift_Del	DEL	C	TCGA-50-5051-01A-21D-1855-08	17076	26455076	216744297	51	131242											
OTOF	9381	broad.mit.edu	37	chr2	26699715	26699716	+	Intron	DNP	CC	AA	AA													caggtgggggctgctgctccCctgaaaggacccaggccccc							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26699716	AA	AA	26699715	1	1	152	0	1	0	0	0	0	0	0	0	11397	638	22	2		2	OTOF	2	26699715	Intron	DNP	CC	TCGA-50-5051-01A-21D-1855-08	244639	26699715	216499658	52	131243											
PPM1G	5496	broad.mit.edu	37	chr2	27604518	27604518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgccattttcttcagccCcctcagtagagagcacctcc	7	15	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27604518	A	A	27604518	3	1	152	1	0	0	0	0	1	0	0	0	12441	623	22	2	55	2	PPM1G	2	27604518	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	904803	27604518	215594855	53	131244											
HEATR5B	54497	broad.mit.edu	37	chr2	37276863	37276864	+	Frame_Shift_Ins	INS	-	A	A													accacctgagccattcttccINSaagagcttcccccgctgcac							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37276864	A	A	37276863	7	5	152	1	0	1	1	0	0	0	0	0	7099	603	21	0	3662	0	HEATR5B	2	37276863	Frame_Shift_Ins	INS	-	TCGA-50-5051-01A-21D-1855-08	9672345	37276863	205922510	54	131245											
MAP4K3	8491	broad.mit.edu	37	chr2	39481555	39481555	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaagtggaatttgataaTgtcttgtgactacttaatgg	10	3	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39481555	C	C	39481555	1	2	152	0	1	0	0	0	0	0	0	0	9353	1479	51	5		5	MAP4K3	2	39481555	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	2204692	39481555	203717818	55	131246											
RAB1A	5861	broad.mit.edu	37	chr2	65332053	65332053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtgaagactacatctcCtataaagcccatgcatggct	7	12	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65332053	A	A	65332053	1	1	152	0	1	0	0	0	0	0	0	0	13013	696	24	2		2	RAB1A	2	65332053	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	25850498	65332053	177867320	56	131247											
APLF	200558	broad.mit.edu	37	chr2	68772346	68772346	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgttcattttcaacatttTagccatcctggtgatagtga	7	9	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68772346	C	C	68772346	2	2	152	1	0	0	0	0	0	0	0	1	778	1751	61	5		5	APLF	2	68772346	Silent	SNP	T	TCGA-50-5051-01A-21D-1855-08	3440293	68772346	174427027	57	131248											
MOGS	7841	broad.mit.edu	37	chr2	74690042	74690042	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggtagcgttcagggggggCccctgggggccgatgctgaa	20	9	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74690042	G	G	74690042	3	3	152	1	0	0	0	0	1	0	0	0	9791	739	26	4	1643	4	MOGS	2	74690042	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	5917696	74690042	168509331	58	131249											
REG3A	5068	broad.mit.edu	37	chr2	79385643	79385643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacctgctgagggagggCagggcaaaggtaggtgggag	21	5	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79385643	A	A	79385643	1	1	152	0	1	0	0	0	0	0	0	0	13320	725	25	3		3	REG3A	2	79385643	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	4695601	79385643	163813730	59	131250											
VWA3B	200403	broad.mit.edu	37	chr2	98810888	98810888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaagcagttgcttggcGggaacaacttgctgaagtca	13	8	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98810888	T	T	98810888	3	4	152	1	0	0	0	0	1	0	0	0	17368	1116	39	1	1712	1	VWA3B	2	98810888	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	19425245	98810888	144388485	60	131251											
C2orf55	343990	broad.mit.edu	37	chr2	99439332	99439332	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtccccgctcctctctcGggctccgtctccgcttctct	8	20	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99439332	T	T	99439332	2	4	152	1	0	0	0	0	0	0	0	1	2198	1103	39	1		1	C2orf55	2	99439332	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	628444	99439332	143760041	61	131252											
ST6GAL2	84620	broad.mit.edu	37	chr2	107459840	107459840	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggaaggccctggacatGgaggagtacagcctgtcgcc	14	11	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107459840	T	T	107459840	2	4	152	1	0	0	0	0	0	0	0	1	15340	1335	47	2		2	ST6GAL2	2	107459840	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	8020508	107459840	135739533	62	131253											
CCDC138	165055	broad.mit.edu	37	chr2	109404661	109404661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaggcgaatcacctgaGgtcaggagttcgagaccact	14	10	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109404661	T	T	109404661	1	4	152	0	1	0	0	0	0	0	0	0	2798	1015	35	2		2	CCDC138	2	109404661	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	1944821	109404661	133794712	63	131254											
IL1F9	56300	broad.mit.edu	37	chr2	113742394	113742394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttctgtttctcctaatGggtacttgttctgacatttc	7	10	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113742394	T	T	113742394	1	4	152	0	1	0	0	0	0	0	0	0	7727	1363	47	2		2	IL1F9	2	113742394	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	4337733	113742394	129456979	64	131255											
CCDC93	54520	broad.mit.edu	37	chr2	118701565	118701565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatttatacctagttagaaGcatttatgcatatttttgtc	5	6	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118701565	T	T	118701565	1	4	152	0	1	0	0	0	0	0	0	0	2900	986	34	3		3	CCDC93	2	118701565	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	4959171	118701565	124497808	65	131256											
LRP1B	53353	broad.mit.edu	37	chr2	141707940	141707940	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaagagtgaacacagccCacctcatcactcccgtcccc	6	18	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141707940	A	A	141707940	2	1	152	1	0	0	0	0	0	0	0	1	9042	581	21	2		2	LRP1B	2	141707940	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	23006375	141707940	101491433	66	131257											
RIF1	55183	broad.mit.edu	37	chr2	152298357	152298357	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagagatatagttaacactCagatttttattagataatat	5	3	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152298357	T	T	152298357	1	4	152	0	1	0	0	0	0	0	0	0	13468	841	29	4		4	RIF1	2	152298357	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	10590417	152298357	90901016	67	131258											
TANC1	85461	broad.mit.edu	37	chr2	160027194	160027194	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggcagaaaacagaggcgCggtggtggttggcaatgtgg	18	6	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160027194	T	T	160027194	3	4	152	1	0	0	0	0	1	0	0	0	15663	768	27	4	1259	4	TANC1	2	160027194	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	7728837	160027194	83172179	68	131259											
LY75	4065	broad.mit.edu	37	chr2	160661760	160661760	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggaaaaggtttgatgttgGaggagagaatacaaaagtga	14	2	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160661760	T	T	160661760	1	4	152	0	1	0	0	0	0	0	0	0	9187	1189	41	3		3	LY75	2	160661760	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	634566	160661760	82537613	69	131260											
PLA2R1	22925	broad.mit.edu	37	chr2	160843553	160843553	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattaagcacctgctgtctgTcaggcactgttctggaaaaa	10	9	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160843553	G	G	160843553	1	3	152	0	1	0	0	0	0	0	0	0	12105	1682	58	5		5	PLA2R1	2	160843553	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	181793	160843553	82355820	70	131261											
KCNH7	90134	broad.mit.edu	37	chr2	163302486	163302486	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatagattcacttttataAttgcaatctttcagaaaata	3	5	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163302486	C	C	163302486	1	2	152	0	1	0	0	0	0	0	0	0	8107	116	4	5		5	KCNH7	2	163302486	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	2458933	163302486	79896887	71	131262											
ITGA4	3676	broad.mit.edu	37	chr2	182395302	182395302	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaaagagtgtgtgcattaGagcagcaaaagagtgcaatg	12	5	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182395302	T	T	182395302	4	4	152	1	0	0	0	0	0	1	0	0	7948	943	33	3	2684	3	ITGA4	2	182395302	Nonsense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	19092816	182395302	60804071	72	131263											
NAB1	4664	broad.mit.edu	37	chr2	191537809	191537809	+	Intron	DEL	C	-	-													tcaagtttttttttttttttCtctcccctttcccttaggtc							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	191537809	-	-	191537809	6	5	152	0	1	1	0	1	0	0	0	0	10225	928	32	0		0	NAB1	2	191537809	Intron	DEL	C	TCGA-50-5051-01A-21D-1855-08	9142507	191537809	51661564	73	131264											
GLS	2744	broad.mit.edu	37	chr2	191785789	191785790	+	Intron	DNP	GC	AA	AA													aaaaatttgactatgtaagtGcaacatgtcattcagttttc							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	191785790	AA	AA	191785789	1	1	152	0	1	0	0	0	0	0	0	0	6527	1334	46	4		4	GLS	2	191785789	Intron	DNP	GC	TCGA-50-5051-01A-21D-1855-08	247980	191785789	51413584	74	131265											
CCDC150	284992	broad.mit.edu	37	chr2	197565880	197565880	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaaagtaaaaataaactGgcctatgaaaacggaaaact	7	6	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197565880	T	T	197565880	2	4	152	1	0	0	0	0	0	0	0	1	2811	1335	47	2		2	CCDC150	2	197565880	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	5780091	197565880	45633493	75	131266											
GIGYF2	26058	broad.mit.edu	37	chr2	233613814	233613814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgattagctctgagccCcagcaaactcttattctttt	6	10	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233613814	A	A	233613814	1	1	152	0	1	0	0	0	0	0	0	0	6442	638	22	2		2	GIGYF2	2	233613814	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	36047934	233613814	9585559	76	131267											
INPP5D	3635	broad.mit.edu	37	chr2	234072517	234072517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagatcctcaaacactccCtgcaagaaatcaccagtgtg	8	12	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234072517	A	A	234072517	3	1	152	1	0	0	0	0	1	0	0	0	7826	680	24	2	959	2	INPP5D	2	234072517	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	458703	234072517	9126856	77	131268											
ATG16L1	55054	broad.mit.edu	37	chr2	234184259	234184259	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgagtgatgaactgccttGactgttgtaaagagagttcc	12	7	0	5			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234184259	T	T	234184259	1	4	152	0	1	0	0	0	0	0	0	0	1095	1305	45	3		3	ATG16L1	2	234184259	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	111742	234184259	9015114	78	131269											
HDAC4	9759	broad.mit.edu	37	chr2	240098157	240098157	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcagcttctgctcccGgtgctgcttctccagctcct	9	17	2	0	rs140596122		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240098157	C	C	240098157	3	2	152	1	0	0	0	0	1	0	0	0	7076	1115	39	4	2904	4	HDAC4	2	240098157	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	5913898	240098157	3101216	79	131270											
CNTN6	27255	broad.mit.edu	37	chr3	1320228	1320228	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtcatatcatcaatgcGgtcacttggagagtgatgtg	13	6	4	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1320228	A	A	1320228	1	1	152	0	1	0	0	0	0	0	0	0	3677	1131	39	4		4	CNTN6	3	1320228	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08		1320228	196702202	80	131271											
GRM7	2917	broad.mit.edu	37	chr3	7620336	7620336	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatgccaggatattcccatCatcaaactggagtggcactc	10	11	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7620336	A	A	7620336	2	1	152	1	0	0	0	0	0	0	0	1	6868	816	29	3		3	GRM7	3	7620336	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	6300108	7620336	190402094	81	131272											
THUMPD3	25917	broad.mit.edu	37	chr3	9413116	9413116	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcacatgcaacagggcaGgagagaaacattgctttacc	11	9	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9413116	T	T	9413116	4	4	152	1	0	0	0	0	0	1	0	0	16007	1001	35	2	713	2	THUMPD3	3	9413116	Nonsense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	1792780	9413116	188609314	82	131273											
C3orf19	51244	broad.mit.edu	37	chr3	14708426	14708426	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagaggcccatggggccCgtacattatgaagacattcg	12	10	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14708426	A	A	14708426	2	1	152	1	0	0	0	0	0	0	0	1	2234	639	23	1		1	C3orf19	3	14708426	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	5295310	14708426	183314004	83	131274											
EFHB	151651	broad.mit.edu	37	chr3	19956746	19956746	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttattcctcttcacaaaTccgagagtcccatatcctca	3	15	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19956746	G	G	19956746	1	3	152	0	1	0	0	0	0	0	0	0	4985	1450	50	5		5	EFHB	3	19956746	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	5248320	19956746	178065684	84	131275											
TOP2B	7155	broad.mit.edu	37	chr3	25668108	25668108	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtttgagaagagaatcaattCcttgttgatgaaatcattat	8	4	2	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25668108	A	A	25668108	4	1	152	1	0	0	0	0	0	1	0	0	16490	864	30	3	2789	3	TOP2B	3	25668108	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	5711362	25668108	172354322	85	131276											
ZNF445	353274	broad.mit.edu	37	chr3	44489138	44489138	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatgttttctccacagcGggagcaccctggggctgact	12	11	1	2	rs138400939		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44489138	T	T	44489138	2	4	152	1	0	0	0	0	0	0	0	1	18045	1103	39	1		1	ZNF445	3	44489138	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	18821030	44489138	153533292	86	131277											
KIF9	64147	broad.mit.edu	37	chr3	47307288	47307288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtcccgcttctggtccCcaagggcaatgatggcctgc	13	13	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47307288	A	A	47307288	3	1	152	1	0	0	0	0	1	0	0	0	8380	623	22	2	1580	2	KIF9	3	47307288	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2818150	47307288	150715142	87	131278											
C3orf62	375341	broad.mit.edu	37	chr3	49311449	49311449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaaggacctatcttccCaaggacaggatggacttgcc	11	10	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49311449	A	A	49311449	1	1	152	0	1	0	0	0	0	0	0	0	2260	609	21	2		2	C3orf62	3	49311449	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2004161	49311449	148710981	88	131279											
RHOA	387	broad.mit.edu	37	chr3	49399951	49399951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcatcttggctagctccCgccttgtgtgctcatcattc	8	14	4	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49399951	A	A	49399951	3	1	152	1	0	0	0	0	1	0	0	0	13440	652	23	1	203	1	RHOA	3	49399951	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	88502	49399951	148622479	89	131280											
ITIH1	3697	broad.mit.edu	37	chr3	52824817	52824817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtgtctgtggacgacGgtggcacctttgaggttgtt	17	6	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52824817	T	T	52824817	3	4	152	1	0	0	0	0	1	0	0	0	7973	1116	39	1	2452	1	ITIH1	3	52824817	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	3424866	52824817	145197613	90	131281											
CACNA1D	776	broad.mit.edu	37	chr3	53753864	53753864	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgttgcctttgtatgttctCacttctgaattttacgtagt	8	7	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53753864	A	A	53753864	1	1	152	0	1	0	0	0	0	0	0	0	2567	841	29	3		3	CACNA1D	3	53753864	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	929047	53753864	144268566	91	131282											
IL17RB	55540	broad.mit.edu	37	chr3	53882769	53882792	+	Intron	DEL	ACTTTTAGGAAGCCTAATATAGGC	-	-													tacattgaaagcacagttggActtttaggaagcctaatata							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53882792	-	-	53882769	6	5	152	0	1	1	0	1	0	0	0	0	7710	290	10	0		0	IL17RB	3	53882769	Intron	DEL	ACTTTTAGGAAGCCTAATATAGGC	TCGA-50-5051-01A-21D-1855-08	128905	53882769	144139661	92	131283											
CACNA2D3	55799	broad.mit.edu	37	chr3	54930775	54930775	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattcttttccacttcaaGggacttcctgaaagctggcg	9	11	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54930775	T	T	54930775	5	4	152	1	0	0	0	0	0	0	1	0	2576	1014	35	2	2348	2	CACNA2D3	3	54930775	Splice_Site	SNP	G	TCGA-50-5051-01A-21D-1855-08	1048006	54930775	143091655	93	131284											
LRTM1	57408	broad.mit.edu	37	chr3	54952687	54952687	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcatgacgcaggttggcCggccttggcttgggtttgag	17	8	0	2	rs150198745		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54952687	A	A	54952687	2	1	152	1	0	0	0	0	0	0	0	1	9131	639	23	1		1	LRTM1	3	54952687	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	21912	54952687	143069743	94	131285											
C3orf63	23272	broad.mit.edu	37	chr3	56695042	56695042	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcaacatctaatttctcAggtctgaaagaaaattttaa	5	6	4	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56695042	G	G	56695042	2	3	152	1	0	0	0	0	0	0	0	1	2261	175	7	5		5	C3orf63	3	56695042	Silent	SNP	A	TCGA-50-5051-01A-21D-1855-08	1742355	56695042	141327388	95	131286											
PROS1	5627	broad.mit.edu	37	chr3	93615610	93615610	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttaatgtttgtgtgaggtCatgcatttttgtttggttac	11	4	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93615610	A	A	93615610	1	1	152	0	1	0	0	0	0	0	0	0	12664	841	29	3		3	PROS1	3	93615610	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	36920568	93615610	104406820	96	131287											
EPHA6	285220	broad.mit.edu	37	chr3	97200280	97200280	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctttctccaaaataatacAggctttcctttgcagttaaa	5	10	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97200280	T	T	97200280	1	4	152	0	1	0	0	0	0	0	0	0	5213	203	7	5		5	EPHA6	3	97200280	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	3584670	97200280	100822150	97	131288											
BBX	56987	broad.mit.edu	37	chr3	107517294	107517294	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagacgggtcagaaatttaGacatgtttccttctaagagc	9	8	3	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107517294	C	C	107517294	1	2	152	0	1	0	0	0	0	0	0	0	1348	957	33	4		4	BBX	3	107517294	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	10317014	107517294	90505136	98	131289											
IFT57	55081	broad.mit.edu	37	chr3	107885748	107885748	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattcttgaaccaaattctCaagctgattgttgatgtact	6	7	2	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107885748	G	G	107885748	3	3	152	1	0	0	0	0	1	0	0	0	7632	835	29	4	371	4	IFT57	3	107885748	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	368454	107885748	90136682	99	131290											
BOC	91653	broad.mit.edu	37	chr3	112999542	112999542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtgtttatagcttctgCgtgatatagtttcctccgct	8	9	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112999542	T	T	112999542	1	4	152	0	1	0	0	0	0	0	0	0	1487	783	27	4		4	BOC	3	112999542	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	5113794	112999542	85022888	100	131291											
C3orf30	152405	broad.mit.edu	37	chr3	118867094	118867094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacttatagaaggttccCttctatagtttatgaagatc	6	7	2	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118867094	A	A	118867094	3	1	152	1	0	0	0	0	1	0	0	0	2242	681	24	2	1472	2	C3orf30	3	118867094	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	5867552	118867094	79155336	101	131292											
NR1I2	8856	broad.mit.edu	37	chr3	119528803	119528803	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcaaaggctagtgtccccctCcccgagtcggtaggggctgg	15	13	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119528803	G	G	119528803	1	3	152	0	1	0	0	0	0	0	0	0	10715	870	30	4		4	NR1I2	3	119528803	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	661709	119528803	78493627	102	131293											
ADCY5	111	broad.mit.edu	37	chr3	123016213	123016213	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactcaccactgggaggtccCgttgttgaagaagtctctgt	11	10	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123016213	T	T	123016213	3	4	152	1	0	0	0	0	1	0	0	0	297	652	23	4	892	4	ADCY5	3	123016213	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3487410	123016213	75006217	103	131294											
KALRN	8997	broad.mit.edu	37	chr3	123987958	123987958	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcccgggcagtgctgaCttccagagcctggtgcccaa	12	14	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123987958	T	T	123987958	2	4	152	1	0	0	0	0	0	0	0	1	8045	564	20	4		4	KALRN	3	123987958	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	971745	123987958	74034472	104	131295											
CHST13	166012	broad.mit.edu	37	chr3	126260868	126260869	+	Missense_Mutation	DNP	CC	AA	AA													actggccgacttcagccccgCcgagatcaaccggcgcctgc							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	126260869	AA	AA	126260868	3	1	152	1	0	0	0	0	1	0	0	0	3432	739	26	3	483	3	CHST13	3	126260868	Missense_Mutation	DNP	CC	TCGA-50-5051-01A-21D-1855-08	2272910	126260868	71761562	105	131296											
CPNE4	131034	broad.mit.edu	37	chr3	131274258	131274258	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacagttaggtcagagtcagGagtgtgagactgctgcaaag	14	7	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131274258	T	T	131274258	1	4	152	0	1	0	0	0	0	0	0	0	3846	1189	41	3		3	CPNE4	3	131274258	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	5013390	131274258	66748172	106	131297											
AMOTL2	51421	broad.mit.edu	37	chr3	134089481	134089481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcttgaggctctcctcCctgagagacctgtgctggaa	12	11	2	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134089481	A	A	134089481	1	1	152	0	1	0	0	0	0	0	0	0	584	638	22	2		2	AMOTL2	3	134089481	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2815223	134089481	63932949	107	131298											
MED12L	116931	broad.mit.edu	37	chr3	151078491	151078491	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaataatgaaagctaaTtgcaattgtatctattaggc	7	4	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151078491	A	A	151078491	1	1	152	0	1	0	0	0	0	0	0	0	9522	1508	52	5		5	MED12L	3	151078491	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	16989010	151078491	46943939	108	131299											
GMPS	8833	broad.mit.edu	37	chr3	155654184	155654184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaccattacattttgatcGggacccacttcaaaagcagc	7	12	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155654184	T	T	155654184	3	4	152	1	0	0	0	0	1	0	0	0	6562	1116	39	1	1923	1	GMPS	3	155654184	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	4575693	155654184	42368246	109	131300											
PLD1	5337	broad.mit.edu	37	chr3	171395615	171395615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactagggtggcatctgtcCattctattacaggctgtggg	12	9	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171395615	A	A	171395615	1	1	152	0	1	0	0	0	0	0	0	0	12140	609	21	2		2	PLD1	3	171395615	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	15741431	171395615	26626815	110	131301											
ABCC5	10057	broad.mit.edu	37	chr3	183683279	183683279	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattgcaatgctgccctctAgaagcgtcatctagggagag	12	9	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183683279	G	G	183683279	3	3	152	1	0	0	0	0	1	0	0	0	56	420	15	5	2541	5	ABCC5	3	183683279	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	12287664	183683279	14339151	111	131302											
EIF4G1	1981	broad.mit.edu	37	chr3	184041944	184041944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcttggagggccttccCtgcccaggactagtcttgag	13	12	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184041944	A	A	184041944	1	1	152	0	1	0	0	0	0	0	0	0	5078	696	24	2		2	EIF4G1	3	184041944	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	358665	184041944	13980486	112	131303											
FAM131A	131408	broad.mit.edu	37	chr3	184062523	184062523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaaactgccccccagccGggaaagtgccttccgcagcc	10	19	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184062523	T	T	184062523	3	4	152	1	0	0	0	0	1	0	0	0	5485	1116	39	1	888	1	FAM131A	3	184062523	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	20579	184062523	13959907	113	131304											
CHRD	8646	broad.mit.edu	37	chr3	184106429	184106429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcaggctgatgggccccGgggctgccgttttgctgggc	17	12	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184106429	T	T	184106429	3	4	152	1	0	0	0	0	1	0	0	0	3403	1116	39	1	2691	1	CHRD	3	184106429	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	43906	184106429	13916001	114	131305											
ZNF141	7700	broad.mit.edu	37	chr4	367610	367610	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtgacaaagcctttaaaCggttctcacacctgaataaa	6	9	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	367610	T	T	367610	3	4	152	1	0	0	0	0	1	0	0	0	17856	527	19	4	1398	4	ZNF141	4	367610	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08		367610	190786666	115	131306											
KIAA1530	57654	broad.mit.edu	37	chr4	1347164	1347164	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcggagccacgggctgggCtcgcacaagtacacgctgga	16	12	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1347164	G	G	1347164	2	3	152	1	0	0	0	0	0	0	0	1	8311	784	28	4		4	KIAA1530	4	1347164	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	979554	1347164	189807112	116	131307											
SH3TC1	54436	broad.mit.edu	37	chr4	8218656	8218656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgcccagtccggccaccCtcagtgaccacctccatcct	7	21	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8218656	A	A	8218656	1	1	152	0	1	0	0	0	0	0	0	0	14374	696	24	2		2	SH3TC1	4	8218656	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	6871492	8218656	182935620	117	131308											
LDB2	9079	broad.mit.edu	37	chr4	16590420	16590420	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcatgagatcatcaaaGgtgaactccaagatcagtct	7	9	5	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16590420	T	T	16590420	2	4	152	1	0	0	0	0	0	0	0	1	8768	987	35	2		2	LDB2	4	16590420	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	8371764	16590420	174563856	118	131309											
DHX15	1665	broad.mit.edu	37	chr4	24529723	24529723	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaattgaagtactggagttGttaataggataggcattatt	10	2	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24529723	A	A	24529723	1	1	152	0	1	0	0	0	0	0	0	0	4541	1392	48	4		4	DHX15	4	24529723	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	7939303	24529723	166624553	119	131310											
NFXL1	152518	broad.mit.edu	37	chr4	47880674	47880674	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctacagcatggcatggtagTggactcaccttaaaaaataa	8	9	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47880674	A	A	47880674	2	1	152	1	0	0	0	0	0	0	0	1	10483	1683	59	5		5	NFXL1	4	47880674	Silent	SNP	T	TCGA-50-5051-01A-21D-1855-08	23350951	47880674	143273602	120	131311											
LRRC66	339977	broad.mit.edu	37	chr4	52863786	52863786	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttctatgacacagcccaaGactgactaatgccaaggatc	7	11	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52863786	A	A	52863786	1	1	152	0	1	0	0	0	0	0	0	0	9105	957	33	4		4	LRRC66	4	52863786	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	4983112	52863786	138290490	121	131312											
KDR	3791	broad.mit.edu	37	chr4	55961730	55961730	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatggccagagcaggattAggagatgacataccttgtag	12	7	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55961730	T	T	55961730	1	4	152	0	1	0	0	0	0	0	0	0	8209	435	15	5		5	KDR	4	55961730	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	3097944	55961730	135192546	122	131313											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68929005	68929005	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgagctcaccatggacCgcaccaactgatggcggaaa	11	11	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68929005	T	T	68929005	1	4	152	0	1	0	0	0	0	0	0	0	16366	667	23	4		4	TMPRSS11F	4	68929005	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	12967275	68929005	122225271	123	131314											
COL25A1	84570	broad.mit.edu	37	chr4	109817711	109817711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggagaatgatctctgacCttttcatattaagcaactct	6	9	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109817711	A	A	109817711	1	1	152	0	1	0	0	0	0	0	0	0	3716	696	24	2		2	COL25A1	4	109817711	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	40888706	109817711	81336565	124	131315											
NDST3	9348	broad.mit.edu	37	chr4	119161837	119161837	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagagatggcttgtttatttCcccccatttcaggtatggag	11	8	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119161837	G	G	119161837	3	3	152	1	0	0	0	0	1	0	0	0	10352	854	30	4	2315	4	NDST3	4	119161837	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	9344126	119161837	71992439	125	131316											
FAT4	79633	broad.mit.edu	37	chr4	126371065	126371065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaaaccttccttaattaGtgagacaacagttaccatca	6	9	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126371065	T	T	126371065	3	4	152	1	0	0	0	0	1	0	0	0	5749	1029	36	3	8928	3	FAT4	4	126371065	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	7209228	126371065	64783211	126	131317											
PLK4	10733	broad.mit.edu	37	chr4	128807324	128807324	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaccatccttttatgtccCgaaattcttcaacaaaaagt	5	10	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128807324	A	A	128807324	2	1	152	1	0	0	0	0	0	0	0	1	12193	644	23	1		1	PLK4	4	128807324	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	2436259	128807324	62346952	127	131318											
FGA	2243	broad.mit.edu	37	chr4	155506940	155506940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgccagattctgagccCctagactcagtctcactgac	8	13	3	5			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155506940	A	A	155506940	3	1	152	1	0	0	0	0	1	0	0	0	5887	622	22	2	1011	2	FGA	4	155506940	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	26699616	155506940	35647336	128	131319											
KLHL2	11275	broad.mit.edu	37	chr4	166231753	166231753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgttggtggctttaatgGctcattaagagttcgcactg	12	7	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166231753	T	T	166231753	3	4	152	1	0	0	0	0	1	0	0	0	8445	1203	42	3	1168	3	KLHL2	4	166231753	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	10724813	166231753	24922523	129	131320											
TLL1	7092	broad.mit.edu	37	chr4	167022082	167022082	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcataatggagagaagacatAttttttttaaaactgaagat	8	3	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167022082	T	T	167022082	1	4	152	0	1	0	0	0	0	0	0	0	16068	464	16	5		5	TLL1	4	167022082	3'UTR	SNP	A	TCGA-50-5051-01A-21D-1855-08	790329	167022082	24132194	130	131321											
ROPN1L	83853	broad.mit.edu	37	chr5	10450234	10450234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttggtggggtatgtacCtataaacagcatattaataa	9	5	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10450234	A	A	10450234	1	1	152	0	1	0	0	0	0	0	0	0	13636	696	24	2		2	ROPN1L	5	10450234	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08		10450234	170465026	131	131322											
CTNND2	1501	broad.mit.edu	37	chr5	11564973	11564973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgttccaattccaccaCcgggttggaaagaagagaaa	10	8	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11564973	A	A	11564973	1	1	152	0	1	0	0	0	0	0	0	0	4054	522	18	3		3	CTNND2	5	11564973	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1114739	11564973	169350287	132	131323											
CDH10	1008	broad.mit.edu	37	chr5	24537862	24537862	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaattcgcagaaggtctttCatgtctcatcactgagcaac	8	10	4	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24537862	A	A	24537862	1	1	152	0	1	0	0	0	0	0	0	0	3126	841	29	3		3	CDH10	5	24537862	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	12972889	24537862	156377398	133	131324											
PDZD2	23037	broad.mit.edu	37	chr5	32000217	32000217	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagaatgtcttgacaaggGatctttttcccatctccctt	6	13	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32000217	T	T	32000217	1	4	152	0	1	0	0	0	0	0	0	0	11795	1189	41	3		3	PDZD2	5	32000217	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	7462355	32000217	148915043	134	131325											
PRLR	5618	broad.mit.edu	37	chr5	35065333	35065333	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggtggggcctctttgGctgattcttcaaagcaagcc	13	9	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35065333	A	A	35065333	3	1	152	1	0	0	0	0	1	0	0	0	12637	1203	42	4	145	4	PRLR	5	35065333	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	3065116	35065333	145849927	135	131326											
SPEF2	79925	broad.mit.edu	37	chr5	35774179	35774179	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaggagaccagtagccAaacagcccacaactggctca	9	12	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35774179	C	C	35774179	1	2	152	0	1	0	0	0	0	0	0	0	15153	145	5	5		5	SPEF2	5	35774179	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	708846	35774179	145141081	136	131327											
EGFLAM	133584	broad.mit.edu	37	chr5	38407344	38407344	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacatagttccttctagtccCttctccaagataagtacctt	4	12	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38407344	G	G	38407344	1	3	152	0	1	0	0	0	0	0	0	0	5006	696	24	4		4	EGFLAM	5	38407344	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2633165	38407344	142507916	137	131328											
MAST4	375449	broad.mit.edu	37	chr5	66427830	66427830	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttgcccaatacaaagttctCgtatgtttataaagatgttt	6	6	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66427830	A	A	66427830	1	1	152	0	1	0	0	0	0	0	0	0	9419	899	31	3		3	MAST4	5	66427830	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	28020486	66427830	114487430	138	131329											
SLC30A5	64924	broad.mit.edu	37	chr5	68400536	68400536	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggcctcactctttgtggaCcactaaggtaaataaaaatg	8	8	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68400536	G	G	68400536	3	3	152	1	0	0	0	0	1	0	0	0	14672	507	18	4	454	4	SLC30A5	5	68400536	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	1972706	68400536	112514724	139	131330											
CCNB1	891	broad.mit.edu	37	chr5	68473356	68473356	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttttgtcttccagactgtCaagaacaagtatgccacatc	6	11	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68473356	T	T	68473356	2	4	152	1	0	0	0	0	0	0	0	1	2941	813	29	4		4	CCNB1	5	68473356	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	72820	68473356	112441904	140	131331											
IQGAP2	10788	broad.mit.edu	37	chr5	75806660	75806660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctggcctccagcaggctGggccttccagaagggatagc	13	14	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75806660	T	T	75806660	1	4	152	0	1	0	0	0	0	0	0	0	7885	1363	47	2		2	IQGAP2	5	75806660	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	7333304	75806660	105108600	141	131332											
DMGDH	29958	broad.mit.edu	37	chr5	78296603	78296603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttgggaggaaaagaaaCttagcctggatcccagggac	12	7	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78296603	A	A	78296603	1	1	152	0	1	0	0	0	0	0	0	0	4621	580	20	3		3	DMGDH	5	78296603	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2489943	78296603	102618657	142	131333											
GPR98	84059	broad.mit.edu	37	chr5	90074751	90074751	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtacaagacgatgagcGggacagcggaagcaggcttg	16	8	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90074751	T	T	90074751	3	4	152	1	0	0	0	0	1	0	0	0	6787	1116	39	1	13173	1	GPR98	5	90074751	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	11778148	90074751	90840509	143	131334											
NR2F1	7025	broad.mit.edu	37	chr5	92923504	92923504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcgagccggagaagatgCgcggggcgcgtgtggctgcg	21	9	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92923504	A	A	92923504	1	1	152	0	1	0	0	0	0	0	0	0	10722	783	27	3		3	NR2F1	5	92923504	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2848753	92923504	87991756	144	131335											
SLC27A6	28965	broad.mit.edu	37	chr5	128302275	128302275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccctcctgaattgcatcCgcgcctgtgggcccagagcc	10	17	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128302275	A	A	128302275	3	1	152	1	0	0	0	0	1	0	0	0	14644	652	23	1	447	1	SLC27A6	5	128302275	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	35378771	128302275	52612985	145	131336											
LOC153328	153328	broad.mit.edu	37	chr5	135186094	135186094	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacctctgcgctgacccatGtccttgcctctctccataga	6	16	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135186094	C	C	135186094	1	2	152	0	1	0	0	0	0	0	0	0	8949	1392	48	4		4	LOC153328	5	135186094	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	6883819	135186094	45729166	146	131337											
PCDHB3	56132	broad.mit.edu	37	chr5	140480848	140480848	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgctcgatcgggaggagcaGccggaactcagcttaacgct	14	12	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140480848	A	A	140480848	2	1	152	1	0	0	0	0	0	0	0	1	11637	962	34	4		4	PCDHB3	5	140480848	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	5294754	140480848	40434412	147	131338											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740860	140740860	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagtttactgccaagtGttgggaaatgccaagtttat	12	5	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140740860	T	T	140740860	2	4	152	1	0	0	0	0	0	0	0	1	11657	1364	48	3		3	PCDHGB2	5	140740860	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	260012	140740860	40174400	148	131339											
ADRB2	154	broad.mit.edu	37	chr5	148206845	148206845	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaccaagaataaggccCgggtgatcattctgatggtg	13	8	2	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148206845	A	A	148206845	2	1	152	1	0	0	0	0	0	0	0	1	341	643	23	1		1	ADRB2	5	148206845	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	7465985	148206845	32708415	149	131340											
PPARGC1B	133522	broad.mit.edu	37	chr5	149215860	149215860	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaccaccgtacaagccCacagaggaggatcccttcaa	7	16	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149215860	A	A	149215860	2	1	152	1	0	0	0	0	0	0	0	1	12397	581	21	2		2	PPARGC1B	5	149215860	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	1009015	149215860	31699400	150	131341											
SLC36A1	206358	broad.mit.edu	37	chr5	150844717	150844717	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctggctccggaaccacGcacactggggaaggtaactg	13	13	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150844717	A	A	150844717	3	1	152	1	0	0	0	0	1	0	0	0	14707	1087	38	4	420	4	SLC36A1	5	150844717	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	1628857	150844717	30070543	151	131342											
GABRA6	2559	broad.mit.edu	37	chr5	161128527	161128527	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgactccaaatatcatctGaagaaaaggatcacttctct	5	11	4	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161128527	T	T	161128527	2	4	152	1	0	0	0	0	0	0	0	1	6225	1277	45	3		3	GABRA6	5	161128527	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	10283810	161128527	19786733	152	131343											
SFXN1	94081	broad.mit.edu	37	chr5	174948945	174948945	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccatggatgagtgcaccCattcaagttgggttagttgg	12	8	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174948945	A	A	174948945	2	1	152	1	0	0	0	0	0	0	0	1	14307	581	21	2		2	SFXN1	5	174948945	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	13820418	174948945	5966315	153	131344											
HRH2	3274	broad.mit.edu	37	chr5	175111225	175111225	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgtccaggacccaaagccGagaacccaggcaacaggaag	12	13	0	1	rs141845922		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175111225	A	A	175111225	3	1	152	1	0	0	0	0	1	0	0	0	7423	1058	37	4	991	4	HRH2	5	175111225	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	162280	175111225	5804035	154	131345											
FAM153A	285596	broad.mit.edu	37	chr5	177166083	177166083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaacactaagatttttcCttagcaaaaaggtgatccca	5	10	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177166083	A	A	177166083	1	1	152	0	1	0	0	0	0	0	0	0	5506	696	24	2		2	FAM153A	5	177166083	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2054858	177166083	3749177	155	131346											
MYLK4	340156	broad.mit.edu	37	chr6	2678501	2678501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaactccttggcctcctcCgagatgtcctgaaattcttc	7	13	1	3	rs147253540		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2678501	A	A	2678501	2	1	152	1	0	0	0	0	0	0	0	1	10153	639	23	1		1	MYLK4	6	2678501	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08		2678501	168436566	156	131347											
PRL	5617	broad.mit.edu	37	chr6	22294587	22294587	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacatgtagcagagcccagTagttcatgtgaaggctcctt	10	9	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22294587	C	C	22294587	1	2	152	0	1	0	0	0	0	0	0	0	12634	1653	57	5		5	PRL	6	22294587	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	19616086	22294587	148820480	157	131348											
BTN3A2	11118	broad.mit.edu	37	chr6	26368293	26368293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggtaagatcttcttcGgtcaccatatttgagttagc	10	8	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26368293	T	T	26368293	1	4	152	0	1	0	0	0	0	0	0	0	1573	1131	39	1		1	BTN3A2	6	26368293	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	4073706	26368293	144746774	158	131349											
C6orf136	221545	broad.mit.edu	37	chr6	30617599	30617599	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttagaagcctttttgagGgacctccctgcccctatcct	9	14	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30617599	T	T	30617599	4	4	152	1	0	0	0	0	0	1	0	0	2354	1233	43	2	886	2	C6orf136	6	30617599	Nonsense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	4249306	30617599	140497468	159	131350											
LTA	4049	broad.mit.edu	37	chr6	31540518	31540518	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttctctgcaggttctccCcatgacaccacctgaacgtc	6	16	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31540518	A	A	31540518	1	1	152	0	1	0	0	0	0	0	0	0	9155	638	22	2		2	LTA	6	31540518	5'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	922919	31540518	139574549	160	131351											
CLIC1	1192	broad.mit.edu	37	chr6	31700099	31700099	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcttcagcactggtttcAtccacttcttctgggagggg	10	11	6	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31700099	C	C	31700099	3	2	152	1	0	0	0	0	1	0	0	0	3557	214	8	5	274	5	CLIC1	6	31700099	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	159581	31700099	139414968	161	131352											
NOTCH4	4855	broad.mit.edu	37	chr6	32170343	32170343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggaagccgcaggaagGggccctgtggctgcaggtgg	20	8	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32170343	T	T	32170343	3	4	152	1	0	0	0	0	1	0	0	0	10646	1232	43	2	2786	2	NOTCH4	6	32170343	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	470244	32170343	138944724	162	131353											
SYNGAP1	8831	broad.mit.edu	37	chr6	33405957	33405957	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttgcagagtatgtcacCaaccattatcggatgctgtg	11	8	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33405957	A	A	33405957	2	1	152	1	0	0	0	0	0	0	0	1	15566	581	21	2		2	SYNGAP1	6	33405957	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	1235614	33405957	137709110	163	131354											
BRPF3	27154	broad.mit.edu	37	chr6	36185671	36185671	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggatttctgcactcagaCtcactgtgtgtgtccttggc	13	10	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36185671	T	T	36185671	1	4	152	0	1	0	0	0	0	0	0	0	1530	580	20	4		4	BRPF3	6	36185671	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2779714	36185671	134929396	164	131355											
LRFN2	57497	broad.mit.edu	37	chr6	40399871	40399871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggagttccctaccaggcGgtcatcgggggctacccagt	14	12	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40399871	T	T	40399871	3	4	152	1	0	0	0	0	1	0	0	0	9025	1116	39	1	1395	1	LRFN2	6	40399871	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	4214200	40399871	130715196	165	131356											
TREML2	79865	broad.mit.edu	37	chr6	41166018	41166018	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccctttcacccagactcGggcaaagccaggctcacact	10	16	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41166018	T	T	41166018	2	4	152	1	0	0	0	0	0	0	0	1	16597	1124	39	1		1	TREML2	6	41166018	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	766147	41166018	129949049	166	131357											
TFAP2B	7021	broad.mit.edu	37	chr6	50807918	50807918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtacatttgcgaaacggaGtttcccgccaaagccgtctc	11	12	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50807918	T	T	50807918	3	4	152	1	0	0	0	0	1	0	0	0	15911	1020	36	3	1012	3	TFAP2B	6	50807918	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	9641900	50807918	120307149	167	131358											
IL17F	112744	broad.mit.edu	37	chr6	52112121	52112121	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttccttggccttgaagttGccatgaagtttcttaattgg	10	7	1	2	rs150617143	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52112121	T	T	52112121	1	4	152	0	1	0	0	0	0	0	0	0	7708	1334	46	3		3	IL17F	6	52112121	5'Flank	SNP	G	TCGA-50-5051-01A-21D-1855-08	1304203	52112121	119002946	168	131359											
B3GAT2	135152	broad.mit.edu	37	chr6	71665881	71665881	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctgtaggtgggcgtgatGgcatagatggtgggcagctg	20	6	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71665881	A	A	71665881	2	1	152	1	0	0	0	0	0	0	0	1	1259	1335	47	4		4	B3GAT2	6	71665881	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	19553760	71665881	99449186	169	131360											
MDN1	23195	broad.mit.edu	37	chr6	90424410	90424410	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgaaatgtagatttcaagTccacgattcctcatagctcg	7	11	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90424410	A	A	90424410	2	1	152	1	0	0	0	0	0	0	0	1	9508	1654	58	5		5	MDN1	6	90424410	Silent	SNP	T	TCGA-50-5051-01A-21D-1855-08	18758529	90424410	80690657	170	131361											
RSPH4A	345895	broad.mit.edu	37	chr6	116948721	116948721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagtagaatatcgagatAcatgaaaaagacaagggaag	11	3	0	5			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116948721	T	T	116948721	1	4	152	0	1	0	0	0	0	0	0	0	13817	406	14	5		5	RSPH4A	6	116948721	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	26524311	116948721	54166346	171	131362											
EYA4	2070	broad.mit.edu	37	chr6	133783899	133783899	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccttattcttaccaaatgCcaggtaagtagctacacatg	6	11	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133783899	T	T	133783899	3	4	152	1	0	0	0	0	1	0	0	0	5374	739	26	4	751	4	EYA4	6	133783899	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	16835178	133783899	37331168	172	131363											
LTV1	84946	broad.mit.edu	37	chr6	144184467	144184467	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatttacaaagagctggtgGaggggaaattaggggaattt	15	2	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144184467	T	T	144184467	1	4	152	0	1	0	0	0	0	0	0	0	9168	1189	41	3		3	LTV1	6	144184467	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	10400568	144184467	26930600	173	131364											
PLEKHG1	57480	broad.mit.edu	37	chr6	151161073	151161073	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccctcaagaatcctccCtcctgaggtctgtgtcacct	7	17	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151161073	T	T	151161073	3	4	152	1	0	0	0	0	1	0	0	0	12163	681	24	4	3257	4	PLEKHG1	6	151161073	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	6976606	151161073	19953994	174	131365											
T	6862	broad.mit.edu	37	chr6	166578318	166578318	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaaggaaagcttttgcaAatggattgtacttaatttta	7	5	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166578318	C	C	166578318	3	2	152	1	0	0	0	0	1	0	0	0	15607	14	1	5	689	5	T	6	166578318	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	15417245	166578318	4536749	175	131366											
GPR31	2853	broad.mit.edu	37	chr6	167570422	167570422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgccctttgcctcggaGggtgtggaagaccctccgat	13	13	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167570422	T	T	167570422	3	4	152	1	0	0	0	0	1	0	0	0	6752	1000	35	2	64	2	GPR31	6	167570422	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	992104	167570422	3544645	176	131367											
GET4	51608	broad.mit.edu	37	chr7	931815	931815	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgggccgcaggaaccgtGggcgcacgagcttgggaagg	18	11	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	931815	T	T	931815	1	4	152	0	1	0	0	0	0	0	0	0	6400	1363	47	2		2	GET4	7	931815	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08		931815	158206848	177	131368											
MAD1L1	8379	broad.mit.edu	37	chr7	2054273	2054273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatggcccgcataccgtccCgctcctgtggacacagaggg	14	14	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2054273	A	A	2054273	3	1	152	1	0	0	0	0	1	0	0	0	9235	652	23	1	961	1	MAD1L1	7	2054273	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	1122458	2054273	157084390	178	131369											
RBAK	57786	broad.mit.edu	37	chr7	5096852	5096852	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtttatggttaactttacCggtgggctttgtaaaacgtt	10	5	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5096852	T	T	5096852	1	4	152	0	1	0	0	0	0	0	0	0	13208	667	23	4		4	RBAK	7	5096852	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	3042579	5096852	154041811	179	131370											
TNRC18	84629	broad.mit.edu	37	chr7	5413639	5413639	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggatgagcagttttacCgctccaggggcagagtgaga	15	7	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5413639	T	T	5413639	1	4	152	0	1	0	0	0	0	0	0	0	16462	667	23	4		4	TNRC18	7	5413639	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	316787	5413639	153725024	180	131371											
TWISTNB	221830	broad.mit.edu	37	chr7	19748635	19748635	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcctctgagcaacctgcaGccatgctgcttgtcaaggtt	11	13	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19748635	A	A	19748635	3	1	152	1	0	0	0	0	1	0	0	0	16910	971	34	4	1027	4	TWISTNB	7	19748635	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	14334996	19748635	139390028	181	131372											
DNAH11	8701	broad.mit.edu	37	chr7	21742411	21742411	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaggagataaaaatagaccCgaagatcaggtactgcaatg	11	7	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21742411	A	A	21742411	2	1	152	1	0	0	0	0	0	0	0	1	4639	639	23	1		1	DNAH11	7	21742411	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	1993776	21742411	137396252	182	131373											
CPVL	54504	broad.mit.edu	37	chr7	29126305	29126305	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactctgctatgagctcctgTaggacattttatttacacaa	6	10	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29126305	C	C	29126305	1	2	152	0	1	0	0	0	0	0	0	0	3867	1653	57	5		5	CPVL	7	29126305	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	7383894	29126305	130012358	183	131374											
PDE1C	5137	broad.mit.edu	37	chr7	31876892	31876892	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtatgcagcataagggAtaaggcttttggcttttcaa	11	6	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31876892	C	C	31876892	3	2	152	1	0	0	0	0	1	0	0	0	11729	333	12	5	827	5	PDE1C	7	31876892	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	2750587	31876892	127261771	184	131375											
TBX20	57057	broad.mit.edu	37	chr7	35271147	35271147	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgagcctggaggaatcccGgaatcctttggcaaaaggat	13	8	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35271147	T	T	35271147	2	4	152	1	0	0	0	0	0	0	0	1	15778	1115	39	1		1	TBX20	7	35271147	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	3394255	35271147	123867516	185	131376											
ANLN	54443	broad.mit.edu	37	chr7	36463518	36463518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacttcaaactctcttaacGgtgatgctctgacattcact	6	11	4	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36463518	T	T	36463518	3	4	152	1	0	0	0	0	1	0	0	0	694	1116	39	1	2627	1	ANLN	7	36463518	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	1192371	36463518	122675145	186	131377											
POU6F2	11281	broad.mit.edu	37	chr7	39246903	39246903	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacttcttcgggaactttctGaccctacttaagtggaaaga	8	9	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39246903	T	T	39246903	1	4	152	0	1	0	0	0	0	0	0	0	12381	1305	45	3		3	POU6F2	7	39246903	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	2783385	39246903	119891760	187	131378											
INHBA	3624	broad.mit.edu	37	chr7	41729798	41729798	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactctcctggcactgctcaCaggcaatccgaacgtccagg	9	16	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41729798	T	T	41729798	3	4	152	1	0	0	0	0	1	0	0	0	7811	478	17	4	553	4	INHBA	7	41729798	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2482895	41729798	117408865	188	131379											
NPC1L1	29881	broad.mit.edu	37	chr7	44572925	44572925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaatgcccctgtccccCaccccattctctgggccatc	7	20	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44572925	A	A	44572925	1	1	152	0	1	0	0	0	0	0	0	0	10666	609	21	2		2	NPC1L1	7	44572925	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2843127	44572925	114565738	189	131380											
ZNF735	730291	broad.mit.edu	37	chr7	63667446	63667446	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctggagagaacaggaCgcctccgtaattttaccggg	13	10	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63667446	T	T	63667446	1	4	152	0	1	0	0	0	0	0	0	0	18253	551	19	4		4	ZNF735	7	63667446	5'Flank	SNP	C	TCGA-50-5051-01A-21D-1855-08	19094521	63667446	95471217	190	131381											
BAZ1B	9031	broad.mit.edu	37	chr7	72861510	72861510	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatagggcaagccggccacaCtacctactgccaagccagcc	9	16	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72861510	G	G	72861510	1	3	152	0	1	0	0	0	0	0	0	0	1335	580	20	4		4	BAZ1B	7	72861510	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	9194064	72861510	86277153	191	131382											
NCF1	653361	broad.mit.edu	37	chr7	74191729	74191729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagggacagggacccacCgttccagctccaccctttgg	13	14	0	0	rs148803484	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74191729	A	A	74191729	1	1	152	0	1	0	0	0	0	0	0	0	10311	667	23	1		1	NCF1	7	74191729	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1330219	74191729	84946934	192	131383											
ZP3	7784	broad.mit.edu	37	chr7	76069710	76069710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaactgaatcggcgacccCttgtctatttcccccaatat	6	13	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76069710	A	A	76069710	1	1	152	0	1	0	0	0	0	0	0	0	18346	696	24	2		2	ZP3	7	76069710	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1877981	76069710	83068953	193	131384											
AGFG2	3268	broad.mit.edu	37	chr7	100151829	100151829	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgacatcggtggagacccCtttgctgcaccccagatggc	12	14	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100151829	T	T	100151829	2	4	152	1	0	0	0	0	0	0	0	1	381	668	24	4		4	AGFG2	7	100151829	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	24082119	100151829	58986834	194	131385											
LHFPL3	375612	broad.mit.edu	37	chr7	104309040	104309040	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatttggcagtgggtatcGcagggatgatgactacagag	15	6	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104309040	A	A	104309040	1	1	152	0	1	0	0	0	0	0	0	0	8838	1102	38	4		4	LHFPL3	7	104309040	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	4157211	104309040	54829623	195	131386											
ASZ1	136991	broad.mit.edu	37	chr7	117024870	117024870	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctccaagttcaagcaacttCaaaactatatttttatgacc	4	10	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117024870	A	A	117024870	3	1	152	1	0	0	0	0	1	0	0	0	1073	825	29	3	862	3	ASZ1	7	117024870	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	12715830	117024870	42113793	196	131387											
FAM3C	10447	broad.mit.edu	37	chr7	121004158	121004158	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaatacccaatgattacatCcataagctaaaataattgtt	3	7	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121004158	A	A	121004158	1	1	152	0	1	0	0	0	0	0	0	0	5609	870	30	3		3	FAM3C	7	121004158	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	3979288	121004158	38134505	197	131388											
ZNF800	168850	broad.mit.edu	37	chr7	127013680	127013680	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcctctttttgccactttAtttagaacaaaatcaatagg	7	8	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127013680	T	T	127013680	3	4	152	1	0	0	0	0	1	0	0	0	18298	446	16	5	292	5	ZNF800	7	127013680	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	6009522	127013680	32124983	198	131389											
TNPO3	23534	broad.mit.edu	37	chr7	128655115	128655115	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctccaattcgtaaggaaCgactatgtacttcttcaggt	8	9	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128655115	A	A	128655115	3	1	152	1	0	0	0	0	1	0	0	0	16460	536	19	3	2377	3	TNPO3	7	128655115	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	1641435	128655115	30483548	199	131390											
CNOT4	4850	broad.mit.edu	37	chr7	135099199	135099199	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctaaagtgaaaacatccCattccactgttattagttaa	4	10	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135099199	A	A	135099199	1	1	152	0	1	0	0	0	0	0	0	0	3653	609	21	2		2	CNOT4	7	135099199	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	6444084	135099199	24039464	200	131391											
CREB3L2	64764	broad.mit.edu	37	chr7	137570275	137570275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgataacaacagccgtgagGggagtctgacagagaagaga	14	6	1	5			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137570275	T	T	137570275	1	4	152	0	1	0	0	0	0	0	0	0	3889	1247	43	2		2	CREB3L2	7	137570275	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	2471076	137570275	21568388	201	131392											
JHDM1D	80853	broad.mit.edu	37	chr7	139827167	139827167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcacaactatgtttcttcCtaaaataaatacatcattac	2	9	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139827167	A	A	139827167	1	1	152	0	1	0	0	0	0	0	0	0	8018	696	24	2		2	JHDM1D	7	139827167	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2256892	139827167	19311496	202	131393											
TRPV6	55503	broad.mit.edu	37	chr7	142574906	142574906	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctctcaccaaagtagatgAggttgcagggactacggcgg	14	9	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142574906	T	T	142574906	3	4	152	1	0	0	0	0	1	0	0	0	16725	304	11	5	1749	5	TRPV6	7	142574906	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	2747739	142574906	16563757	203	131394											
RARRES2	5919	broad.mit.edu	37	chr7	150037118	150037118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacacccaggcatgtgcccCacaccccaaaccccaagtcc	6	21	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150037118	A	A	150037118	1	1	152	0	1	0	0	0	0	0	0	0	13164	609	21	2		2	RARRES2	7	150037118	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	7462212	150037118	9101545	204	131395											
MYOM2	9172	broad.mit.edu	37	chr8	2037867	2037867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctggcagagagtcaacGcccagacggctgtgagatcc	14	12	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2037867	T	T	2037867	3	4	152	1	0	0	0	0	1	0	0	0	10186	1087	38	3	1735	3	MYOM2	8	2037867	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08		2037867	144326155	205	131396											
NRG1	3084	broad.mit.edu	37	chr8	32505179	32505179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatcatttggttgggggGgcctctgcgtggtaatggac	16	7	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32505179	T	T	32505179	1	4	152	0	1	0	0	0	0	0	0	0	10742	1247	43	2		2	NRG1	8	32505179	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	30467312	32505179	113858843	206	131397											
POTEA	340441	broad.mit.edu	37	chr8	43197322	43197322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgaggcagtattatttaTcttacaggtcaaaagccaaa	7	6	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43197322	A	A	43197322	1	1	152	0	1	0	0	0	0	0	0	0	12356	1450	50	5		5	POTEA	8	43197322	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	10692143	43197322	103166700	207	131398											
MCM4	4173	broad.mit.edu	37	chr8	48874140	48874140	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgaggattccacctccacGggggagttgcagccgatgcc	15	13	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48874140	T	T	48874140	2	4	152	1	0	0	0	0	0	0	0	1	9482	1103	39	1		1	MCM4	8	48874140	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	5676818	48874140	97489882	208	131399											
PXDNL	137902	broad.mit.edu	37	chr8	52323848	52323848	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgagcccctgcttcacaCgttcccgtatcagctgcagc	9	16	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52323848	G	G	52323848	3	3	152	1	0	0	0	0	1	0	0	0	12956	536	19	4	2399	4	PXDNL	8	52323848	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3449708	52323848	94040174	209	131400											
TRPA1	8989	broad.mit.edu	37	chr8	72975784	72975784	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccccatttatttgatttaCatggcttagctcctttttta	4	9	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72975784	G	G	72975784	3	3	152	1	0	0	0	0	1	0	0	0	16702	478	17	4	2876	4	TRPA1	8	72975784	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	20651936	72975784	73388238	210	131401											
UBE2W	55284	broad.mit.edu	37	chr8	74742537	74742537	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgaaatgtgaaaataattTtgtagttttaaaaagcgggt	9	1	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74742537	G	G	74742537	1	3	152	0	1	0	0	0	0	0	0	0	17003	1856	64	5		5	UBE2W	8	74742537	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	1766753	74742537	71621485	211	131402											
GDAP1	54332	broad.mit.edu	37	chr8	75276141	75276141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcacactcacccttaaGggtgagaccactgataccag	7	13	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75276141	T	T	75276141	1	4	152	0	1	0	0	0	0	0	0	0	6370	1015	35	2		2	GDAP1	8	75276141	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	533604	75276141	71087881	212	131403											
RIMS2	9699	broad.mit.edu	37	chr8	104780825	104780825	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcattgtggatgccaatcGgagtgctctaacttggttat	11	7	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104780825	A	A	104780825	1	1	152	0	1	0	0	0	0	0	0	0	13479	1131	39	4		4	RIMS2	8	104780825	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	29504684	104780825	41583197	213	131404											
LRP12	29967	broad.mit.edu	37	chr8	105521219	105521219	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgaaccagctacagttgaTttttgcaggatattcagaag	9	6	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105521219	A	A	105521219	3	1	152	1	0	0	0	0	1	0	0	0	9041	1493	52	5	2379	5	LRP12	8	105521219	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08	740394	105521219	40842803	214	131405											
PKHD1L1	93035	broad.mit.edu	37	chr8	110482821	110482821	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccagcatgagcctactgaTgttgttgataaattaaatga	8	7	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110482821	A	A	110482821	1	1	152	0	1	0	0	0	0	0	0	0	12067	1479	51	5		5	PKHD1L1	8	110482821	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	4961602	110482821	35881201	215	131406											
CSMD3	114788	broad.mit.edu	37	chr8	113237150	113237150	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcctgtatactgtgttttAggtgcagtcctgttgatgag	11	7	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113237150	T	T	113237150	2	4	152	1	0	0	0	0	0	0	0	1	3980	407	15	5		5	CSMD3	8	113237150	Silent	SNP	A	TCGA-50-5051-01A-21D-1855-08	2754329	113237150	33126872	216	131407											
TRPS1	7227	broad.mit.edu	37	chr8	116426992	116426992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactttttatctgaatgtgCaaaggttgcatccttttgtg	10	6	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116426992	A	A	116426992	3	1	152	1	0	0	0	0	1	0	0	0	16718	709	25	3	744	3	TRPS1	8	116426992	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3189842	116426992	29937030	217	131408											
ATAD2	29028	broad.mit.edu	37	chr8	124358260	124358260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacacaatacaaaaaaaTggggcaattttagcttttgc	6	6	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124358260	A	A	124358260	1	1	152	0	1	0	0	0	0	0	0	0	1075	1479	51	5		5	ATAD2	8	124358260	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08	7931268	124358260	22005762	218	131409											
FER1L6	654463	broad.mit.edu	37	chr8	125033892	125033892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactttgtggaaaaaatcCgctttcttgttgatgaggta	9	5	1	2	rs150164383	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125033892	A	A	125033892	3	1	152	1	0	0	0	0	1	0	0	0	5872	652	23	1	2178	1	FER1L6	8	125033892	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	675632	125033892	21330130	219	131410											
TG	7038	broad.mit.edu	37	chr8	134024175	134024175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgtggcagtccctggccCtctcttcagtggttgttgat	11	12	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134024175	A	A	134024175	3	1	152	1	0	0	0	0	1	0	0	0	15936	681	24	2	6434	2	TG	8	134024175	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	8990283	134024175	12339847	220	131411											
ST3GAL1	6482	broad.mit.edu	37	chr8	134478338	134478338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccgctggagcctctgtGggcggaggacagaaggtggt	17	10	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134478338	T	T	134478338	1	4	152	0	1	0	0	0	0	0	0	0	15332	1363	47	2		2	ST3GAL1	8	134478338	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	454163	134478338	11885684	221	131412											
PTK2	5747	broad.mit.edu	37	chr8	141745432	141745432	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcataaggctgtagagggTaggaggacaatttggaggca	16	5	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141745432	C	C	141745432	3	2	152	1	0	0	0	0	1	0	0	0	12868	1638	57	5	1254	5	PTK2	8	141745432	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08	7267094	141745432	4618590	222	131413											
CYP11B2	1585	broad.mit.edu	37	chr8	143996585	143996585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcatccaccatcgggaGgaacctctgcacggccttgg	11	15	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143996585	T	T	143996585	3	4	152	1	0	0	0	0	1	0	0	0	4179	1000	35	2	1067	2	CYP11B2	8	143996585	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	2251153	143996585	2367437	223	131414											
ZNF707	286075	broad.mit.edu	37	chr8	144772428	144772428	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgcctttctgccttctctCttaaggggtggggaaagaaa	11	9	4	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144772428	A	A	144772428	1	1	152	0	1	0	0	0	0	0	0	0	18239	928	32	3		3	ZNF707	8	144772428	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	775843	144772428	1591594	224	131415											
JAK2	3717	broad.mit.edu	37	chr9	5114047	5114047	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcccatactggaggatgaGctggcctccacacaaagcaa	9	13	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5114047	C	C	5114047	1	2	152	0	1	0	0	0	0	0	0	0	8008	986	34	4		4	JAK2	9	5114047	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08		5114047	136099384	225	131416											
ERMP1	79956	broad.mit.edu	37	chr9	5823880	5823880	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgcattaaaatatacaacGcacaatctcacatacctgtt	3	10	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5823880	A	A	5823880	1	1	152	0	1	0	0	0	0	0	0	0	5278	1102	38	4		4	ERMP1	9	5823880	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	709833	5823880	135389551	226	131417											
SNAPC3	6619	broad.mit.edu	37	chr9	15433731	15433731	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtatggtagctttatactgGatatgcttagttgaaaacaa	9	4	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15433731	C	C	15433731	1	2	152	0	1	0	0	0	0	0	0	0	14950	1189	41	4		4	SNAPC3	9	15433731	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	9609851	15433731	125779700	227	131418											
UBAP2	55833	broad.mit.edu	37	chr9	33986767	33986767	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctagcttacctctaccccGggctcgcttgccacgatctg	8	17	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33986767	T	T	33986767	2	4	152	1	0	0	0	0	0	0	0	1	16963	1115	39	1		1	UBAP2	9	33986767	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	18553036	33986767	107226664	228	131419											
CNTFR	1271	broad.mit.edu	37	chr9	34557978	34557978	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcacaggctcccgcggCggcactgggggtgaggacag	18	12	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34557978	T	T	34557978	2	4	152	1	0	0	0	0	0	0	0	1	3670	755	27	4		4	CNTFR	9	34557978	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	571211	34557978	106655453	229	131420											
MSMP	692094	broad.mit.edu	37	chr9	35753920	35753920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcctgggtattttgacacGggatcatctgtaaggcccca	11	10	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35753920	T	T	35753920	1	4	152	0	1	0	0	0	0	0	0	0	9978	1131	39	1		1	MSMP	9	35753920	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	1195942	35753920	105459511	230	131421											
MSMP	692094	broad.mit.edu	37	chr9	35753979	35753979	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctcctccattcctaaCgcttcaccccactttacctt	3	18	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35753979	T	T	35753979	1	4	152	0	1	0	0	0	0	0	0	0	9978	551	19	4		4	MSMP	9	35753979	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	59	35753979	105459452	231	131422											
NPR2	4882	broad.mit.edu	37	chr9	35809649	35809649	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcttggtccccttcctccCtactttctgtaaatatctgt	6	13	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35809649	A	A	35809649	1	1	152	0	1	0	0	0	0	0	0	0	10690	696	24	2		2	NPR2	9	35809649	3'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	55670	35809649	105403782	232	131423											
FAM75A6	389730	broad.mit.edu	37	chr9	43627777	43627777	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtctctggtgggtggcGggaaagaggatcttgctgga	18	6	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43627777	T	T	43627777	3	4	152	1	0	0	0	0	1	0	0	0	5674	1116	39	1	3125	1	FAM75A6	9	43627777	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	7818128	43627777	97585654	233	131424											
TRPM3	80036	broad.mit.edu	37	chr9	73213442	73213442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcagtagatgaccctccCgtcactcctgaagggctggt	11	14	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73213442	A	A	73213442	3	1	152	1	0	0	0	0	1	0	0	0	16712	652	23	1	2242	1	TRPM3	9	73213442	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	29585665	73213442	67999989	234	131425											
C9orf64	84267	broad.mit.edu	37	chr9	86570614	86570614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttccatatgcattaaaccCttgcttttacaacatggaat	4	10	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86570614	A	A	86570614	1	1	152	0	1	0	0	0	0	0	0	0	2515	696	24	2		2	C9orf64	9	86570614	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	13357172	86570614	54642817	235	131426											
NOL8	55035	broad.mit.edu	37	chr9	95062039	95062039	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacactccgtctcaaaaaAaaaaaataaaataaaaaaag	3	7	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95062039	C	C	95062039	1	2	152	0	1	0	0	0	0	0	0	0	10622	29	1	5		5	NOL8	9	95062039	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	8491425	95062039	46151392	236	131427											
COL15A1	1306	broad.mit.edu	37	chr9	101749458	101749458	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgagactgcaggctgtaCatcctcattcccacgctttt	9	12	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101749458	T	T	101749458	1	4	152	0	1	0	0	0	0	0	0	0	3704	493	17	4		4	COL15A1	9	101749458	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	6687419	101749458	39463973	237	131428											
MUSK	4593	broad.mit.edu	37	chr9	113524461	113524461	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatttgacttcctgtgggAacttcctttcctgttaatag	7	8	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113524461	T	T	113524461	1	4	152	0	1	0	0	0	0	0	0	0	10083	261	9	5		5	MUSK	9	113524461	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	11775003	113524461	27688970	238	131429											
AKNA	80709	broad.mit.edu	37	chr9	117139159	117139159	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgatggagccaatgaatcGggaagggagtggcttaggtg	18	5	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117139159	T	T	117139159	2	4	152	1	0	0	0	0	0	0	0	1	463	1124	39	1		1	AKNA	9	117139159	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	3614698	117139159	24074272	239	131430											
DFNB31	25861	broad.mit.edu	37	chr9	117165060	117165060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacattgaactcagtgaCcagaaagtcaatgtagtcac	7	10	4	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117165060	A	A	117165060	3	1	152	1	0	0	0	0	1	0	0	0	4495	507	18	3	29	3	DFNB31	9	117165060	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	25901	117165060	24048371	240	131431											
MORN5	254956	broad.mit.edu	37	chr9	124922138	124922138	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caataccaagaacttttcagCctccagcggggtggggcttc	11	12	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124922138	G	G	124922138	1	3	152	0	1	0	0	0	0	0	0	0	9805	754	26	4		4	MORN5	9	124922138	5'Flank	SNP	C	TCGA-50-5051-01A-21D-1855-08	7757078	124922138	16291293	241	131432											
CDK9	1025	broad.mit.edu	37	chr9	130550676	130550676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctcggtgaggactccCgagcgggccaaggggggtga	19	9	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130550676	A	A	130550676	1	1	152	0	1	0	0	0	0	0	0	0	3181	667	23	1		1	CDK9	9	130550676	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	5628538	130550676	10662755	242	131433											
GOLGA2	2801	broad.mit.edu	37	chr9	131020243	131020243	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acccttcttgacccatgccaGgagagactcattcacctgca	7	15	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131020243	C	C	131020243	1	2	152	0	1	0	0	0	0	0	0	0	6616	1015	35	4		4	GOLGA2	9	131020243	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	469567	131020243	10193188	243	131434											
ODF2	4957	broad.mit.edu	37	chr9	131260863	131260863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggaggcaggtcagtccCgatttcatgaatgactagct	13	9	2	2	rs118126816	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131260863	A	A	131260863	1	1	152	0	1	0	0	0	0	0	0	0	10922	667	23	1		1	ODF2	9	131260863	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	240620	131260863	9952568	244	131435											
PKN3	29941	broad.mit.edu	37	chr9	131482036	131482036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcccgaggtgctgaccCaggaggcatacacacgggct	14	13	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131482036	A	A	131482036	3	1	152	1	0	0	0	0	1	0	0	0	12076	595	21	2	2271	2	PKN3	9	131482036	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	221173	131482036	9731395	245	131436											
AGPAT2	10555	broad.mit.edu	37	chr9	139571431	139571431	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgttctccctgaccatgcgCtcgcccaggtcggccatcac	9	18	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139571431	G	G	139571431	3	3	152	1	0	0	0	0	1	0	0	0	387	796	28	4	378	4	AGPAT2	9	139571431	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	8089395	139571431	1642000	246	131437											
C9orf86	55684	broad.mit.edu	37	chr9	139733631	139733631	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggtggggcagttcaggaCgcctccagaggaccctgact	15	13	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139733631	T	T	139733631	1	4	152	0	1	0	0	0	0	0	0	0	2528	551	19	4		4	C9orf86	9	139733631	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	162200	139733631	1479800	247	131438											
C9orf139	401563	broad.mit.edu	37	chr9	139929387	139929387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggcaaacggggctcggGggttttgcccagaaatgggt	17	8	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139929387	T	T	139929387	3	4	152	1	0	0	0	0	1	0	0	0	2485	1232	43	2	460	2	C9orf139	9	139929387	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	195756	139929387	1284044	248	131439											
PNPLA7	375775	broad.mit.edu	37	chr9	140389626	140389626	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggagccggctgctggggcCgcgggcttgggagggccgag	22	11	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140389626	G	G	140389626	1	3	152	0	1	0	0	0	0	0	0	0	12265	667	23	4		4	PNPLA7	9	140389626	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	460239	140389626	823805	249	131440											
GTPBP4	23560	broad.mit.edu	37	chr10	1051911	1051911	+	Intron	SNP	G	T	T													ttgtttgattcaagtcagttGtggggagaaaatagttttct					rs149266066	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1051911	T	T	1051911	1	4	152	0	1	0	0	0	0	0	0	0	6947	1392	48	3		3	GTPBP4	10	1051911	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08		1051911	134482836	250	131441	569	2									
GTPBP4	23560	broad.mit.edu	37	chr10	1051913	1051913	+	Intron	SNP	G	T	T													gtttgattcaagtcagttgtGgggagaaaatagttttcttt							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1051913	T	T	1051913	1	4	152	0	1	0	0	0	0	0	0	0	6947	1363	47	2		2	GTPBP4	10	1051913	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	2	1051913	134482834	251	131442	569	2									
PFKP	5214	broad.mit.edu	37	chr10	3167242	3167242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggccctggggctggcaGgtgagcacccggcacccccg	15	17	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3167242	T	T	3167242	1	4	152	0	1	0	0	0	0	0	0	0	11861	1015	35	2		2	PFKP	10	3167242	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	2115329	3167242	132367505	252	131443											
GPR158	57512	broad.mit.edu	37	chr10	25887114	25887114	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacactggaatccctgtcGggtaaaaaactaacacaaaa	6	11	0	0	rs145805452	byFrequency;by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25887114	T	T	25887114	2	4	152	1	0	0	0	0	0	0	0	1	6728	1103	39	1		1	GPR158	10	25887114	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	22719872	25887114	109647633	253	131444											
GAD2	2572	broad.mit.edu	37	chr10	26513487	26513488	+	Missense_Mutation	DNP	CC	AA	AA													ggttcacctatgaaattgctCcagtatttgtgcttttggaa							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26513488	AA	AA	26513487	3	1	152	1	0	0	0	0	1	0	0	0	6240	855	30	3	653	3	GAD2	10	26513487	Missense_Mutation	DNP	CC	TCGA-50-5051-01A-21D-1855-08	626373	26513487	109021260	254	131445											
ABI1	10006	broad.mit.edu	37	chr10	27059961	27059961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcagcctctatcaataCagaggaaatactgtggatca	8	10	4	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27059961	A	A	27059961	1	1	152	0	1	0	0	0	0	0	0	0	88	493	17	3		3	ABI1	10	27059961	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	546474	27059961	108474786	255	131446											
TMEM72	643236	broad.mit.edu	37	chr10	45430012	45430012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatggccacacagcgccgGgttgcaggagctctgctgca	14	12	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45430012	T	T	45430012	1	4	152	0	1	0	0	0	0	0	0	0	16324	1247	43	2		2	TMEM72	10	45430012	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	18370051	45430012	90104735	256	131447											
A1CF	29974	broad.mit.edu	37	chr10	52610568	52610568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctataggaacctctaaattcCtttcaagaagtaattaggtg	7	7	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52610568	A	A	52610568	1	1	152	0	1	0	0	0	0	0	0	0	2	695	24	2		2	A1CF	10	52610568	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	7180556	52610568	82924179	257	131448											
C10orf27	219793	broad.mit.edu	37	chr10	72534946	72534946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggggctgtgtcctcaccCttgggcggagcgtagagcag	17	11	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72534946	A	A	72534946	3	1	152	1	0	0	0	0	1	0	0	0	1611	695	24	2	300	2	C10orf27	10	72534946	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	19924378	72534946	62999801	258	131449											
GRID1	2894	broad.mit.edu	37	chr10	87406912	87406912	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgggggctgaccacccCgtggccctgttacagtgcac	12	16	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87406912	A	A	87406912	1	1	152	0	1	0	0	0	0	0	0	0	6837	667	23	1		1	GRID1	10	87406912	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	14871966	87406912	48127835	259	131450											
SORBS1	10580	broad.mit.edu	37	chr10	97082543	97082543	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgagatctggtcctgctCtcaatgaatgatgagaaagc	11	8	2	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97082543	A	A	97082543	1	1	152	0	1	0	0	0	0	0	0	0	15041	913	32	3		3	SORBS1	10	97082543	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	9675631	97082543	38452204	260	131451											
ENTPD1	953	broad.mit.edu	37	chr10	97471790	97471790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctcccggcctctctccCtctgtggaatctggtagagc	11	15	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97471790	A	A	97471790	1	1	152	0	1	0	0	0	0	0	0	0	5180	696	24	2		2	ENTPD1	10	97471790	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	389247	97471790	38062957	261	131452											
TLL2	7093	broad.mit.edu	37	chr10	98155769	98155769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttgttcatgtctccccCgcaggtagctttagaaagag	9	10	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98155769	A	A	98155769	3	1	152	1	0	0	0	0	1	0	0	0	16069	652	23	1	1694	1	TLL2	10	98155769	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	683979	98155769	37378978	262	131453											
ZFYVE27	118813	broad.mit.edu	37	chr10	99519120	99519121	+	3'UTR	DEL	CC	-	-													agcagtagaccccccactctCcccacccctggcccactgtg							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99519121	-	-	99519120	6	5	152	0	1	1	0	1	0	0	0	0	17795	870	30	0		0	ZFYVE27	10	99519120	3'UTR	DEL	CC	TCGA-50-5051-01A-21D-1855-08	1363351	99519120	36015627	263	131454											
BTRC	8945	broad.mit.edu	37	chr10	103310589	103310589	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaacccccccgttccccttCtcgaacatacacctacatct	3	19	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103310589	T	T	103310589	3	4	152	1	0	0	0	0	1	0	0	0	1579	913	32	4	1844	4	BTRC	10	103310589	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3791469	103310589	32224158	264	131455											
POLL	27343	broad.mit.edu	37	chr10	103345714	103345714	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttcaccagctgagcaccCgggggcagctggggtagtct	15	12	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103345714	T	T	103345714	2	4	152	1	0	0	0	0	0	0	0	1	12300	639	23	4		4	POLL	10	103345714	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	35125	103345714	32189033	265	131456											
COL17A1	1308	broad.mit.edu	37	chr10	105796199	105796199	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttcacgctgcgagtcctCatcccagtcatcccaggccc	8	17	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105796199	T	T	105796199	1	4	152	0	1	0	0	0	0	0	0	0	3706	841	29	4		4	COL17A1	10	105796199	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2450485	105796199	29738548	266	131457											
GFRA1	2674	broad.mit.edu	37	chr10	117885010	117885010	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacttcttgcaaatgtcGtcgaggttgcaggccttcgc	11	11	1	0	rs79176106		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117885010	A	A	117885010	2	1	152	1	0	0	0	0	0	0	0	1	6411	1136	40	4		4	GFRA1	10	117885010	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	12088811	117885010	17649737	267	131458											
SLC18A2	6571	broad.mit.edu	37	chr10	119029581	119029581	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttccctgactgtcttcaGgaatggtggattcgtcaatg	12	8	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119029581	T	T	119029581	5	4	152	1	0	0	0	0	0	0	1	0	14539	1014	35	2	1236	2	SLC18A2	10	119029581	Splice_Site	SNP	G	TCGA-50-5051-01A-21D-1855-08	1144571	119029581	16505166	268	131459											
LHPP	64077	broad.mit.edu	37	chr10	126301959	126301959	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagagccccgcctcctccAcccctgcctctcctccaccc	7	24	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126301959	C	C	126301959	1	2	152	0	1	0	0	0	0	0	0	0	8841	174	6	5		5	LHPP	10	126301959	3'UTR	SNP	A	TCGA-50-5051-01A-21D-1855-08	7272378	126301959	9232788	269	131460											
DOCK1	1793	broad.mit.edu	37	chr10	129172131	129172134	+	Splice_Site	DEL	GTAA	-	-													aaagtgttatttgataaaatGtaagtgttgattagcagtgg							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129172134	-	-	129172131	8	5	152	1	0	1	0	1	0	0	1	0	4724	1391	48	0	3590	0	DOCK1	10	129172131	Splice_Site	DEL	GTAA	TCGA-50-5051-01A-21D-1855-08	2870172	129172131	6362616	270	131461											
B4GALNT4	338707	broad.mit.edu	37	chr11	375781	375781	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctttttcctcagtgagagGgggcccgcgcgggggcgagg	18	11	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	375781	C	C	375781	1	2	152	0	1	0	0	0	0	0	0	0	1274	1247	43	4		4	B4GALNT4	11	375781	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08		375781	134630735	271	131462											
NUP98	4928	broad.mit.edu	37	chr11	3797197	3797197	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtgctgccaaaaggattaGaggtggtatttgtggttcca	13	5	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3797197	C	C	3797197	3	2	152	1	0	0	0	0	1	0	0	0	10868	942	33	4	5180	4	NUP98	11	3797197	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	3421416	3797197	131209319	272	131463											
MICAL2	9645	broad.mit.edu	37	chr11	12284134	12284134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggtactaacccccaaccCgctttccgcaccccgtcctc	6	20	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12284134	A	A	12284134	1	1	152	0	1	0	0	0	0	0	0	0	9663	667	23	1		1	MICAL2	11	12284134	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	8486937	12284134	122722382	273	131464											
CCDC73	493860	broad.mit.edu	37	chr11	32676433	32676433	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgaaatttttgttctttaAttgttagattgatgttttct	6	3	2	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32676433	T	T	32676433	3	4	152	1	0	0	0	0	1	0	0	0	2874	101	4	5	2544	5	CCDC73	11	32676433	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	20392299	32676433	102330083	274	131465											
CAT	847	broad.mit.edu	37	chr11	34472535	34472535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgtctttctcgttagGggcctttggctactttgagg	12	8	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34472535	T	T	34472535	3	4	152	1	0	0	0	0	1	0	0	0	2712	1246	43	2	249	2	CAT	11	34472535	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	1796102	34472535	100533981	275	131466											
KIAA0652	9776	broad.mit.edu	37	chr11	46681025	46681025	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctctttttccacctcccCaccatcccaggtagggggaa	7	17	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46681025	A	A	46681025	3	1	152	1	0	0	0	0	1	0	0	0	8258	594	21	2	813	2	KIAA0652	11	46681025	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	12208490	46681025	88325491	276	131467											
NUP160	23279	broad.mit.edu	37	chr11	47819339	47819340	+	Frame_Shift_Ins	INS	-	A	A													acattgctcacccttgcggtINSaattgtggcgatagatgtga							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47819340	A	A	47819339	7	5	152	1	0	1	1	0	0	0	0	0	10852	1638	57	0	1069	0	NUP160	11	47819339	Frame_Shift_Ins	INS	-	TCGA-50-5051-01A-21D-1855-08	1138314	47819339	87187177	277	131468											
TMEM132A	54972	broad.mit.edu	37	chr11	60694647	60694647	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgccagctctggagctgtCatcatctctccctcttatgc	7	16	5	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60694647	T	T	60694647	1	4	152	0	1	0	0	0	0	0	0	0	16168	841	29	4		4	TMEM132A	11	60694647	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	12875308	60694647	74311869	278	131469											
PGA5	5222	broad.mit.edu	37	chr11	61015999	61015999	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggttactggcagatcacCgtggacaggtgagactgcca	15	9	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61015999	A	A	61015999	2	1	152	1	0	0	0	0	0	0	0	1	11867	639	23	1		1	PGA5	11	61015999	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	321352	61015999	73990517	279	131470											
BBS1	582	broad.mit.edu	37	chr11	66297387	66297387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctgagccccctgtcCacgacagcccgagagccact	9	19	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66297387	A	A	66297387	2	1	152	1	0	0	0	0	0	0	0	1	1340	581	21	2		2	BBS1	11	66297387	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	5281388	66297387	68709129	280	131471											
ACTN3	89	broad.mit.edu	37	chr11	66328259	66328259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagccttcctcccaccccCtcctgcatactgtgaccacc	5	21	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66328259	A	A	66328259	1	1	152	0	1	0	0	0	0	0	0	0	206	696	24	2		2	ACTN3	11	66328259	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	30872	66328259	68678257	281	131472											
MMP20	9313	broad.mit.edu	37	chr11	102449744	102449744	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttatgatagttttcatgaAgaaagttttcagtggaaaca	8	4	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102449744	C	C	102449744	1	2	152	0	1	0	0	0	0	0	0	0	9752	87	3	5		5	MMP20	11	102449744	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	36121485	102449744	32556772	282	131473											
SIDT2	51092	broad.mit.edu	37	chr11	117063953	117063953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcaacctgctcctttacttCgccttctacatcatcatgaa	4	14	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117063953	A	A	117063953	3	1	152	1	0	0	0	0	1	0	0	0	14416	883	31	3	2280	3	SIDT2	11	117063953	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	14614209	117063953	17942563	283	131474											
SCN4B	6330	broad.mit.edu	37	chr11	118012059	118012059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacttcttccactgtgtgGcccgagtagggaggaaaggg	14	10	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118012059	T	T	118012059	1	4	152	0	1	0	0	0	0	0	0	0	14034	1218	42	3		3	SCN4B	11	118012059	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	948106	118012059	16994457	284	131475											
TECTA	7007	broad.mit.edu	37	chr11	121000732	121000732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcggcatcatcaacgaccCctccaacagctccttcctgg	8	17	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121000732	T	T	121000732	3	4	152	1	0	0	0	0	1	0	0	0	15869	623	22	4	2787	4	TECTA	11	121000732	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2988673	121000732	14005784	285	131476											
ST3GAL4	6484	broad.mit.edu	37	chr11	126276877	126276877	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagaagaaggagccgtgcctCcagggtgaggcagagagcaa	17	8	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126276877	G	G	126276877	2	3	152	1	0	0	0	0	0	0	0	1	15335	842	30	4		4	ST3GAL4	11	126276877	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	5276145	126276877	8729639	286	131477											
ANO2	57101	broad.mit.edu	37	chr12	5848490	5848490	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagagaactcacttcttccTcttctatgccagtcaggtcc	7	13	5	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5848490	C	C	5848490	3	2	152	1	0	0	0	0	1	0	0	0	697	1551	54	5	1637	5	ANO2	12	5848490	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08		5848490	128003405	287	131478											
A2ML1	144568	broad.mit.edu	37	chr12	8998736	8998736	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actggcccctgatccttcccTggtgatctatgccatttttc	7	14	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8998736	A	A	8998736	3	1	152	1	0	0	0	0	1	0	0	0	5	1580	55	5	1655	5	A2ML1	12	8998736	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08	3150246	8998736	124853159	288	131479											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	152	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	16399549	25398285	108453610	289	131480											
DENND5B	160518	broad.mit.edu	37	chr12	31577710	31577710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaggagacttggtttccCttcattatacttctatttgc	7	8	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31577710	A	A	31577710	1	1	152	0	1	0	0	0	0	0	0	0	4477	696	24	2		2	DENND5B	12	31577710	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	6179425	31577710	102274185	290	131481											
KRT7	3855	broad.mit.edu	37	chr12	52627365	52627365	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggaggagagcgagcagatCaagaccctcaacaacaagtt	11	10	2	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52627365	G	G	52627365	3	3	152	1	0	0	0	0	1	0	0	0	8554	816	29	4	287	4	KRT7	12	52627365	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	21049655	52627365	81224530	291	131482											
KIAA0748	9840	broad.mit.edu	37	chr12	55367262	55367262	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcctgtccagcacttaccCgcaatcctgcagccagtctt	7	16	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55367262	A	A	55367262	4	1	152	1	0	0	0	0	0	1	0	0	8260	666	23	1	1392	1	KIAA0748	12	55367262	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2739897	55367262	78484633	292	131483											
RAB5B	5869	broad.mit.edu	37	chr12	56380777	56380777	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacagctaggcccaatggGcaaccccaggccagcaaaat	10	14	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56380777	T	T	56380777	2	4	152	1	0	0	0	0	0	0	0	1	13057	1190	42	3		3	RAB5B	12	56380777	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	1013515	56380777	77471118	293	131484											
LRP1	4035	broad.mit.edu	37	chr12	57604565	57604565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacccagcaggtgtgtgcGggctactgtgccaacaacag	13	12	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57604565	T	T	57604565	2	4	152	1	0	0	0	0	0	0	0	1	9038	1103	39	1		1	LRP1	12	57604565	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	1223788	57604565	76247330	294	131485											
STAC3	246329	broad.mit.edu	37	chr12	57638591	57638591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtgggtcagaagtgatGggaagcctaggagttaaaga	17	3	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57638591	T	T	57638591	1	4	152	0	1	0	0	0	0	0	0	0	15359	1363	47	2		2	STAC3	12	57638591	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	34026	57638591	76213304	295	131486											
TBK1	29110	broad.mit.edu	37	chr12	64854128	64854128	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaagtagtaaaacttcaAtcttatatttattgtagtta	6	3	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64854128	G	G	64854128	1	3	152	0	1	0	0	0	0	0	0	0	15759	116	4	5		5	TBK1	12	64854128	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	7215537	64854128	68997767	296	131487											
RAP1B	5908	broad.mit.edu	37	chr12	69047944	69047944	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaatggacaaggatttgCattagtttattccatcacag	8	6	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69047944	T	T	69047944	3	4	152	1	0	0	0	0	1	0	0	0	13144	710	25	4	250	4	RAP1B	12	69047944	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	4193816	69047944	64803951	297	131488											
PAWR	5074	broad.mit.edu	37	chr12	80014945	80014945	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgcatcttctcgtttccGctctttctgccctgcttcat	5	14	5	0	rs147882965		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80014945	A	A	80014945	3	1	152	1	0	0	0	0	1	0	0	0	11571	1086	38	4	483	4	PAWR	12	80014945	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	10967001	80014945	53836950	298	131489											
SLC6A15	55117	broad.mit.edu	37	chr12	85286010	85286010	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaagtaaagaccgaggatGatatcaaataaatccttgat	9	5	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85286010	A	A	85286010	1	1	152	0	1	0	0	0	0	0	0	0	14792	1305	45	4		4	SLC6A15	12	85286010	5'UTR	SNP	G	TCGA-50-5051-01A-21D-1855-08	5271065	85286010	48565885	299	131490											
USP30	84749	broad.mit.edu	37	chr12	109523560	109523560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcacttaccgacggtccCcaccttctgccaggaaccct	7	17	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109523560	A	A	109523560	3	1	152	1	0	0	0	0	1	0	0	0	17188	623	22	2	1428	2	USP30	12	109523560	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	24237550	109523560	24328335	300	131491											
TPCN1	53373	broad.mit.edu	37	chr12	113711405	113711405	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatgccctcctactccCggaacccctggtcctgcgtc	9	17	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113711405	A	A	113711405	2	1	152	1	0	0	0	0	0	0	0	1	16519	643	23	1		1	TPCN1	12	113711405	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	4187845	113711405	20140490	301	131492											
NOS1	4842	broad.mit.edu	37	chr12	117696773	117696773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagagtctcaaccttggCccctacttcttcctgatgat	8	12	2	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117696773	A	A	117696773	1	1	152	0	1	0	0	0	0	0	0	0	10636	754	26	3		3	NOS1	12	117696773	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	3985368	117696773	16155122	302	131493											
UNC119B	84747	broad.mit.edu	37	chr12	121154925	121154925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacccatctggtccagcGccctggcattgtctcgtggc	11	14	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121154925	T	T	121154925	1	4	152	0	1	0	0	0	0	0	0	0	17109	1102	38	3		3	UNC119B	12	121154925	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	3458152	121154925	12696970	303	131494											
KDM2B	84678	broad.mit.edu	37	chr12	122017878	122017878	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaagatctatcatatGccagatacagatttggaaaa	6	5	2	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122017878	C	C	122017878	1	2	152	0	1	0	0	0	0	0	0	0	8195	1334	46	4		4	KDM2B	12	122017878	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	862953	122017878	11834017	304	131495											
CLIP1	6249	broad.mit.edu	37	chr12	122862287	122862287	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataccgaactcctgccacCgaaccatcgttcttgcctat	5	15	1	0	rs115820623	byFrequency;by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122862287	A	A	122862287	2	1	152	1	0	0	0	0	0	0	0	1	3564	639	23	1		1	CLIP1	12	122862287	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	844409	122862287	10989608	305	131496											
NCOR2	9612	broad.mit.edu	37	chr12	124858954	124858954	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaggccagccggccacattCgtacctgggccactgcattc	10	17	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124858954	T	T	124858954	1	4	152	0	1	0	0	0	0	0	0	0	10331	899	31	4		4	NCOR2	12	124858954	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1996667	124858954	8992941	306	131497											
RIMBP2	23504	broad.mit.edu	37	chr12	130926969	130926969	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggcacgatgtcttctcCgatgtcgtcgatgttcacgt	11	10	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130926969	A	A	130926969	4	1	152	1	0	0	0	0	0	1	0	0	13472	661	23	1	2329	1	RIMBP2	12	130926969	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	6068015	130926969	2924926	307	131498											
ULK1	8408	broad.mit.edu	37	chr12	132401465	132401465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttagggtggggtgggccGggcacccagcacagccctgc	17	13	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132401465	T	T	132401465	1	4	152	0	1	0	0	0	0	0	0	0	17101	1131	39	1		1	ULK1	12	132401465	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	1474496	132401465	1450430	308	131499											
EP400	57634	broad.mit.edu	37	chr12	132504687	132504687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacggcagcccccaccacGgcctctgctgctccacaggg	12	19	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132504687	T	T	132504687	2	4	152	1	0	0	0	0	0	0	0	1	5191	1103	39	1		1	EP400	12	132504687	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	103222	132504687	1347208	309	131500											
RASL11A	387496	broad.mit.edu	37	chr13	27845858	27845858	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcccgggggcgtccaggtAagaaccgccaggggcaaaca	14	13	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27845858	G	G	27845858	1	3	152	0	1	0	0	0	0	0	0	0	13189	377	13	5		5	RASL11A	13	27845858	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08		27845858	87324020	310	131501											
FLT3	2322	broad.mit.edu	37	chr13	28602366	28602366	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatattctcgtggcttcccaGctgggtcatcatcttgagtt	9	10	4	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28602366	A	A	28602366	2	1	152	1	0	0	0	0	0	0	0	1	6000	962	34	4		4	FLT3	13	28602366	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	756508	28602366	86567512	311	131502											
MYO16	23026	broad.mit.edu	37	chr13	109777613	109777613	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagaatgcttcagacattgCccgggaaaatgaccggctcc	10	12	2	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109777613	T	T	109777613	3	4	152	1	0	0	0	0	1	0	0	0	10158	739	26	4	3737	4	MYO16	13	109777613	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	81175247	109777613	5392265	312	131503											
POTEG	404785	broad.mit.edu	37	chr14	19573050	19573050	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgctccaaaagaggagaCatcacagaaatacaacaagc	8	9	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19573050	T	T	19573050	1	4	152	0	1	0	0	0	0	0	0	0	12362	493	17	4		4	POTEG	14	19573050	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08		19573050	87776490	313	131504											
OR4M1	441670	broad.mit.edu	37	chr14	20248599	20248599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctatttgttcatcctaCcaggaaatatccttatcatt	3	11	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20248599	A	A	20248599	3	1	152	1	0	0	0	0	1	0	0	0	11169	507	18	3	120	3	OR4M1	14	20248599	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	675549	20248599	87100941	314	131505											
PCK2	5106	broad.mit.edu	37	chr14	24566321	24566321	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagcagcagggcctcatcCgaaagctccccaagtacaat	10	13	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24566321	T	T	24566321	4	4	152	1	0	0	0	0	0	1	0	0	11676	644	23	4	256	4	PCK2	14	24566321	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	4317722	24566321	82783219	315	131506											
RNF31	55072	broad.mit.edu	37	chr14	24626765	24626765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttctcgtacgccctggcccGaggaggctgcatgcactttc	12	14	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24626765	T	T	24626765	3	4	152	1	0	0	0	0	1	0	0	0	13598	1058	37	3	2707	3	RNF31	14	24626765	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	60444	24626765	82722775	316	131507											
TBPL2	387332	broad.mit.edu	37	chr14	55903438	55903438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaatgggaatttgacaaaCtgctgctgtttaagcccagc	11	8	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55903438	A	A	55903438	3	1	152	1	0	0	0	0	1	0	0	0	15768	565	20	3	702	3	TBPL2	14	55903438	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	31276673	55903438	51446102	317	131508											
FLRT2	23768	broad.mit.edu	37	chr14	86089367	86089367	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcttttaactaccgcgcGgtagaagacaccatttgttc	9	10	0	2	rs147101710	byFrequency	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86089367	T	T	86089367	2	4	152	1	0	0	0	0	0	0	0	1	5997	1103	39	1		1	FLRT2	14	86089367	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	30185929	86089367	21260173	318	131509											
WDR25	79446	broad.mit.edu	37	chr14	100847905	100847905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccctctctacgtgggccCgggagtgtctgagtttattc	12	12	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100847905	A	A	100847905	3	1	152	1	0	0	0	0	1	0	0	0	17409	652	23	1	646	1	WDR25	14	100847905	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	14758538	100847905	6501635	319	131510											
SNRPN	6638	broad.mit.edu	37	chr15	25156045	25156045	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctttctcctgaaggaccaTccttccataagccttgcttt	6	13	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25156045	G	G	25156045	1	3	152	0	1	0	0	0	0	0	0	0	14984	1450	50	5		5	SNRPN	15	25156045	Intron	SNP	T	TCGA-50-5051-01A-21D-1855-08		25156045	77375347	320	131511											
TGM5	9333	broad.mit.edu	37	chr15	43552356	43552356	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggtaccgacccacggcCgccgtgggaggagcgcacaa	15	13	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43552356	T	T	43552356	2	4	152	1	0	0	0	0	0	0	0	1	15956	639	23	4		4	TGM5	15	43552356	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	18396311	43552356	58979036	321	131512											
CKMT1B	1159	broad.mit.edu	37	chr15	43890472	43890472	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgacctgtccatctaacCtgggcactggacttcgggca	10	13	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43890472	G	G	43890472	3	3	152	1	0	0	0	0	1	0	0	0	3481	680	24	4	984	4	CKMT1B	15	43890472	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	338116	43890472	58640920	322	131513											
SEMA7A	8482	broad.mit.edu	37	chr15	74711046	74711046	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtgggggcagtttaggaaGagaagccagctccctcggat	16	8	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74711046	A	A	74711046	1	1	152	0	1	0	0	0	0	0	0	0	14156	957	33	4		4	SEMA7A	15	74711046	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	30820574	74711046	27820346	323	131514											
ULK3	25989	broad.mit.edu	37	chr15	75134867	75134867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccaccccgcccctcccCgggtctacctactgcacacc	5	25	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75134867	A	A	75134867	1	1	152	0	1	0	0	0	0	0	0	0	17103	667	23	1		1	ULK3	15	75134867	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	423821	75134867	27396525	324	131515											
C15orf42	90381	broad.mit.edu	37	chr15	90168944	90168944	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagattcagaagttagtaaGagtaaagaggggtctccaag	13	4	2	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90168944	T	T	90168944	3	4	152	1	0	0	0	0	1	0	0	0	1809	933	33	3	5481	3	C15orf42	15	90168944	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	15034077	90168944	12362448	325	131516											
CACNA1H	8912	broad.mit.edu	37	chr16	1250433	1250433	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctacacgcagccgcaggcCgagggggtgggcgctgcacg	18	14	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1250433	T	T	1250433	2	4	152	1	0	0	0	0	0	0	0	1	2571	639	23	4		4	CACNA1H	16	1250433	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08		1250433	89104320	326	131517											
TELO2	9894	broad.mit.edu	37	chr16	1552867	1552867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggagctggctgtgaggtgCccggaggtcgccccgggtgg	20	11	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1552867	T	T	1552867	1	4	152	0	1	0	0	0	0	0	0	0	15879	754	26	4		4	TELO2	16	1552867	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	302434	1552867	88801886	327	131518											
SRL	6345	broad.mit.edu	37	chr16	4242278	4242278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcctgagtgatggccCgctcaatcttctccagaaag	10	12	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4242278	A	A	4242278	3	1	152	1	0	0	0	0	1	0	0	0	15268	652	23	1	127	1	SRL	16	4242278	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2689411	4242278	86112475	328	131519											
SRL	6345	broad.mit.edu	37	chr16	4242324	4242324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatgtaggagcactgctGggagagcagtttgaaactgg	14	8	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4242324	T	T	4242324	3	4	152	1	0	0	0	0	1	0	0	0	15268	1357	47	2	173	2	SRL	16	4242324	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	46	4242324	86112429	329	131520											
USP7	7874	broad.mit.edu	37	chr16	9002396	9002396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggttcagcaagattggaaCatgtctggagactctggaga	14	7	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9002396	A	A	9002396	1	1	152	0	1	0	0	0	0	0	0	0	17215	493	17	3		3	USP7	16	9002396	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	4760072	9002396	81352357	330	131521											
XYLT1	64131	broad.mit.edu	37	chr16	17202764	17202764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcgttcctccgtgcctGttccacctgggcggggttga	15	13	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17202764	T	T	17202764	3	4	152	1	0	0	0	0	1	0	0	0	17590	1386	48	3	215	3	XYLT1	16	17202764	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	8200368	17202764	73151989	331	131522											
ERI2	112479	broad.mit.edu	37	chr16	20808084	20808084	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctattttggctgttaccCaaaacccattccaaagacta	4	13	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20808084	A	A	20808084	1	1	152	0	1	0	0	0	0	0	0	0	5270	609	21	2		2	ERI2	16	20808084	3'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	3605320	20808084	69546669	332	131523											
USP31	57478	broad.mit.edu	37	chr16	23160107	23160107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctcgggccgccccgccCggtactggcccagcgccagg	16	18	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23160107	A	A	23160107	3	1	152	1	0	0	0	0	1	0	0	0	17189	652	23	1	3637	1	USP31	16	23160107	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2352023	23160107	67194646	333	131524											
APOB48R	55911	broad.mit.edu	37	chr16	28508966	28508966	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcgagggcagaggggatGggagccatggtggaggctgg	22	6	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28508966	T	T	28508966	3	4	152	1	0	0	0	0	1	0	0	0	788	1348	47	2	2587	2	APOB48R	16	28508966	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	5348859	28508966	61845787	334	131525											
MT1H	4496	broad.mit.edu	37	chr16	56703776	56703776	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcttctcgcttgggaactCcagtctcacctcggcttgca	8	15	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56703776	A	A	56703776	1	1	152	0	1	0	0	0	0	0	0	0	9996	870	30	3		3	MT1H	16	56703776	5'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	28194810	56703776	33650977	335	131526											
NLRC5	84166	broad.mit.edu	37	chr16	57111872	57111872	+	Frame_Shift_Del	DEL	T	-	-													caggcttggctgcaatgcccTgggggatcccacagccctgg							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57111872	-	-	57111872	7	5	152	1	0	1	0	1	0	0	0	0	10565	1580	55	0	5183	0	NLRC5	16	57111872	Frame_Shift_Del	DEL	T	TCGA-50-5051-01A-21D-1855-08	408096	57111872	33242881	336	131527											
CDH8	1006	broad.mit.edu	37	chr16	61823463	61823463	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcagacctttagtaatcCttggagagccatatttgtga	9	8	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61823463	A	A	61823463	1	1	152	0	1	0	0	0	0	0	0	0	3146	696	24	2		2	CDH8	16	61823463	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	4711591	61823463	28531290	337	131528											
CDH11	1009	broad.mit.edu	37	chr16	64984589	64984589	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggtcctggttaccagcCtgtatttgagaagcatgtgt	12	8	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64984589	A	A	64984589	1	1	152	0	1	0	0	0	0	0	0	0	3127	696	24	2		2	CDH11	16	64984589	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	3161126	64984589	25370164	338	131529											
NAE1	8883	broad.mit.edu	37	chr16	66842900	66842900	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattatacttactaatttcaTccttgttaattgtatccaaa	2	7	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66842900	A	A	66842900	3	1	152	1	0	0	0	0	1	0	0	0	10233	1435	50	5	395	5	NAE1	16	66842900	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08	1858311	66842900	23511853	339	131530											
FAM65A	79567	broad.mit.edu	37	chr16	67573547	67573547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactgtggtgtgagaaaGgggagctgtgacgagtctga	19	4	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67573547	T	T	67573547	1	4	152	0	1	0	0	0	0	0	0	0	5650	1015	35	2		2	FAM65A	16	67573547	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	730647	67573547	22781206	340	131531											
DUS2L	54920	broad.mit.edu	37	chr16	68104848	68104848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggttgctttttagcggagGatctcatgaccacatccaac	9	11	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68104848	T	T	68104848	3	4	152	1	0	0	0	0	1	0	0	0	4846	1174	41	3	685	3	DUS2L	16	68104848	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	531301	68104848	22249905	341	131532											
TERF2	7014	broad.mit.edu	37	chr16	69402421	69402421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatcaggaagaagaggcCacagaattgcattaattctc	9	8	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69402421	A	A	69402421	1	1	152	0	1	0	0	0	0	0	0	0	15884	609	21	2		2	TERF2	16	69402421	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1297573	69402421	20952332	342	131533											
PDPR	55066	broad.mit.edu	37	chr16	70164389	70164389	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaaaaaggtcaagttactgGagtggagaccgataaaggac	12	6	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70164389	C	C	70164389	3	2	152	1	0	0	0	0	1	0	0	0	11783	1174	41	4	689	4	PDPR	16	70164389	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	761968	70164389	20190364	343	131534											
CALB2	794	broad.mit.edu	37	chr16	71406079	71406079	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgggtatattgaaggtaaaGagctagaaaactttttccaa	9	4	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71406079	C	C	71406079	3	2	152	1	0	0	0	0	1	0	0	0	2600	943	33	4	124	4	CALB2	16	71406079	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	1241690	71406079	18948674	344	131535											
LDHD	197257	broad.mit.edu	37	chr16	75146138	75146138	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcccagatacagtgggctCgctggcaggaagactgcctc	15	12	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75146138	T	T	75146138	1	4	152	0	1	0	0	0	0	0	0	0	8775	899	31	4		4	LDHD	16	75146138	3'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	3740059	75146138	15208615	345	131536											
WWOX	51741	broad.mit.edu	37	chr16	79245725	79245725	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggatgggcacacacaccCgccctgtgtgtgtcccctca	11	16	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79245725	A	A	79245725	1	1	152	0	1	0	0	0	0	0	0	0	17541	667	23	1		1	WWOX	16	79245725	3'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	4099587	79245725	11109028	346	131537											
NECAB2	54550	broad.mit.edu	37	chr16	84028311	84028311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtaagccctggcctgacCacggcgtctactccttccaa	8	15	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84028311	A	A	84028311	1	1	152	0	1	0	0	0	0	0	0	0	10400	609	21	2		2	NECAB2	16	84028311	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	4782586	84028311	6326442	347	131538											
ZCCHC14	23174	broad.mit.edu	37	chr16	87447928	87447928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccatctgcccgacacacGggccctctctgtgtatgagt	9	15	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87447928	T	T	87447928	1	4	152	0	1	0	0	0	0	0	0	0	17709	1131	39	1		1	ZCCHC14	16	87447928	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	3419617	87447928	2906825	348	131539											
ZMYND15	84225	broad.mit.edu	37	chr17	4648623	4648623	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctccccagcccaacccCttccgctccccctttcgcct	4	25	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4648623	T	T	4648623	2	4	152	1	0	0	0	0	0	0	0	1	17834	668	24	4		4	ZMYND15	17	4648623	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08		4648623	76546587	349	131540											
VAMP2	6844	broad.mit.edu	37	chr17	8064056	8064057	+	3'UTR	DEL	AC	-	-													acagggggacacacacacggAcacacacacacacggatcca							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8064057	-	-	8064056	6	5	152	0	1	1	0	1	0	0	0	0	17240	290	10	0		0	VAMP2	17	8064056	3'UTR	DEL	AC	TCGA-50-5051-01A-21D-1855-08	3415433	8064056	73131154	350	131541											
MPRIP	23164	broad.mit.edu	37	chr17	16979085	16979085	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaccgactttgacaaccCagtgcaccggtctcgggtaa	12	12	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16979085	A	A	16979085	3	1	152	1	0	0	0	0	1	0	0	0	9837	594	21	2	191	2	MPRIP	17	16979085	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	8915029	16979085	64216125	351	131542											
PRPSAP2	5636	broad.mit.edu	37	chr17	18832241	18832241	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtcttctgacgcccccCggcggattgaagagtctgcc	12	13	3	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18832241	A	A	18832241	2	1	152	1	0	0	0	0	0	0	0	1	12688	643	23	1		1	PRPSAP2	17	18832241	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	1853156	18832241	62362969	352	131543											
KCNJ12	3768	broad.mit.edu	37	chr17	21318895	21318895	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgtggacatccgctggCggtacatgctgctcatcttc	11	13	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21318895	G	G	21318895	3	3	152	1	0	0	0	0	1	0	0	0	8116	759	27	4	243	4	KCNJ12	17	21318895	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2486654	21318895	59876315	353	131544											
KCNJ12	3768	broad.mit.edu	37	chr17	21319622	21319622	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggccaatgagatcctgtGgggtcaccgctttgagcccg	13	13	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21319622	T	T	21319622	3	4	152	1	0	0	0	0	1	0	0	0	8116	1357	47	2	970	2	KCNJ12	17	21319622	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	727	21319622	59875588	354	131545											
BLMH	642	broad.mit.edu	37	chr17	28613820	28613820	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactcaatcccaccctgcttCatatattgtaccttgtgatt	4	12	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28613820	A	A	28613820	1	1	152	0	1	0	0	0	0	0	0	0	1452	841	29	3		3	BLMH	17	28613820	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	7294198	28613820	52581390	355	131546											
ACCN1	40	broad.mit.edu	37	chr17	31415820	31415820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccatttctcctccttgtGcctctgcagggggtcggggg	13	12	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31415820	T	T	31415820	1	4	152	0	1	0	0	0	0	0	0	0	128	1334	46	3		3	ACCN1	17	31415820	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	2802000	31415820	49779390	356	131547											
PGAP3	93210	broad.mit.edu	37	chr17	37829167	37829167	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcacacagctctgacagctCgcatggagacaagggtgggg	16	10	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37829167	A	A	37829167	1	1	152	0	1	0	0	0	0	0	0	0	11874	899	31	3		3	PGAP3	17	37829167	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	6413347	37829167	43366043	357	131548											
KRT23	25984	broad.mit.edu	37	chr17	39092709	39092709	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggggtgggcagctccgCgtggtgaaggacagggagat	20	8	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39092709	T	T	39092709	2	4	152	1	0	0	0	0	0	0	0	1	8531	755	27	4		4	KRT23	17	39092709	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	1263542	39092709	42102501	358	131549											
MPP3	4356	broad.mit.edu	37	chr17	41888164	41888164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaatggccagcaggccCagcaactcacttctggctcc	9	16	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41888164	A	A	41888164	1	1	152	0	1	0	0	0	0	0	0	0	9829	609	21	2		2	MPP3	17	41888164	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2795455	41888164	39307046	359	131550											
GFAP	2670	broad.mit.edu	37	chr17	42990791	42990791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgctcctggagttccCgaacctcctgaccagggtga	11	15	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42990791	A	A	42990791	3	1	152	1	0	0	0	0	1	0	0	0	6401	652	23	1	825	1	GFAP	17	42990791	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	1102627	42990791	38204419	360	131551											
SP2	6668	broad.mit.edu	37	chr17	45993674	45993674	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctctccctctcagcccCggcaagaatagctttggaat	8	16	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45993674	A	A	45993674	2	1	152	1	0	0	0	0	0	0	0	1	15078	639	23	1		1	SP2	17	45993674	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	3002883	45993674	35201536	361	131552											
COL1A1	1277	broad.mit.edu	37	chr17	48267630	48267630	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcctttgtcctcattccgtCcctcgaggtcccaggtccca	8	18	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48267630	A	A	48267630	1	1	152	0	1	0	0	0	0	0	0	0	3709	870	30	3		3	COL1A1	17	48267630	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	2273956	48267630	32927580	362	131553											
CHAD	1101	broad.mit.edu	37	chr17	48545931	48545931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggatctggcagtgctgcaGgtgcaatgacacgaggttcg	16	9	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48545931	T	T	48545931	3	4	152	1	0	0	0	0	1	0	0	0	3340	991	35	2	847	2	CHAD	17	48545931	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	278301	48545931	32649279	363	131554											
PPM1E	22843	broad.mit.edu	37	chr17	57043078	57043078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagacagtgaaattggccCgttctgtcttcagcaaacta	9	9	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57043078	A	A	57043078	3	1	152	1	0	0	0	0	1	0	0	0	12439	652	23	1	617	1	PPM1E	17	57043078	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	8497147	57043078	24152132	364	131555											
BPTF	2186	broad.mit.edu	37	chr17	65871802	65871802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtctctcagaaaccccCgatagcagcaacatggcaga	11	12	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65871802	A	A	65871802	1	1	152	0	1	0	0	0	0	0	0	0	1504	639	23	1		1	BPTF	17	65871802	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	8828724	65871802	15323408	365	131556											
ABCA6	23460	broad.mit.edu	37	chr17	67079296	67079296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacagggatttttgccCtttccatgggaaatctcatt	7	11	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67079296	A	A	67079296	1	1	152	0	1	0	0	0	0	0	0	0	36	696	24	2		2	ABCA6	17	67079296	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1207494	67079296	14115914	366	131557											
C17orf56	146705	broad.mit.edu	37	chr17	79202754	79202754	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcaggaacgcgaaagctgAcggctctgagccaggaggct	15	10	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79202754	G	G	79202754	3	3	152	1	0	0	0	0	1	0	0	0	1880	275	10	5	29	5	C17orf56	17	79202754	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	12123458	79202754	1992456	367	131558											
FOXK2	3607	broad.mit.edu	37	chr17	80544350	80544350	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggaaaggaggagaggggAgaccacagggaggtcaaagg	22	4	1	2	rs113681820		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80544350	G	G	80544350	1	3	152	0	1	0	0	0	0	0	0	0	6075	319	11	5		5	FOXK2	17	80544350	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	1341596	80544350	650860	368	131559											
PTPRM	5797	broad.mit.edu	37	chr18	8376062	8376062	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagaggtgtgcatgaaatcCgagagatcagacagtttcac	12	7	2	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8376062	G	G	8376062	3	3	152	1	0	0	0	0	1	0	0	0	12914	644	23	4	3288	4	PTPRM	18	8376062	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08		8376062	69701186	369	131560											
KLHL14	57565	broad.mit.edu	37	chr18	30349722	30349722	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatgaaatccactgactggAcccgctccaccagctccggg	10	16	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30349722	T	T	30349722	3	4	152	1	0	0	0	0	1	0	0	0	8441	275	10	5	1085	5	KLHL14	18	30349722	Missense_Mutation	SNP	A	TCGA-50-5051-01A-21D-1855-08	21973660	30349722	47727526	370	131561											
SMAD7	4092	broad.mit.edu	37	chr18	46447669	46447669	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgaaaagcaagcactcagGaggaaaatattagcagcaaa	9	7	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46447669	T	T	46447669	1	4	152	0	1	0	0	0	0	0	0	0	14877	1189	41	3		3	SMAD7	18	46447669	3'UTR	SNP	G	TCGA-50-5051-01A-21D-1855-08	16097947	46447669	31629579	371	131562											
MYO5B	4645	broad.mit.edu	37	chr18	47438511	47438511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttcttgaccagcaccCgataccggttgaaaaagtca	7	13	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47438511	A	A	47438511	3	1	152	1	0	0	0	0	1	0	0	0	10173	652	23	1	3515	1	MYO5B	18	47438511	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	990842	47438511	30638737	372	131563											
ALPK2	115701	broad.mit.edu	37	chr18	56203629	56203629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggaattatgagaccacCgtctgatgccttgctctcag	10	11	3	2	rs144733035	byFrequency	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56203629	A	A	56203629	3	1	152	1	0	0	0	0	1	0	0	0	545	652	23	1	2758	1	ALPK2	18	56203629	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	8765118	56203629	21873619	373	131564											
PTBP1	5725	broad.mit.edu	37	chr19	805446	805446	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcacagcgcccgctcgCggtggaggttgtgggtgcga	18	12	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	805446	T	T	805446	1	4	152	0	1	0	0	0	0	0	0	0	12831	783	27	4		4	PTBP1	19	805446	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08		805446	58323537	374	131565											
RANBP3	8498	broad.mit.edu	37	chr19	5925559	5925559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggcctgagtcgggcacGgggaccacagacccctctct	13	15	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5925559	T	T	5925559	1	4	152	0	1	0	0	0	0	0	0	0	13137	1131	39	1		1	RANBP3	19	5925559	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	5120113	5925559	53203424	375	131566											
XAB2	56949	broad.mit.edu	37	chr19	7684771	7684771	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggccatgctgcctcagttcCccaccccgggcccccttggg	12	19	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7684771	G	G	7684771	1	3	152	0	1	0	0	0	0	0	0	0	17545	638	22	4		4	XAB2	19	7684771	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1759212	7684771	51444212	376	131567											
ELAVL1	1994	broad.mit.edu	37	chr19	8028583	8028583	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccagaggatcccctcgtcGgcatcctgccccaggttgta	11	15	0	1	rs141885519	byFrequency	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8028583	A	A	8028583	2	1	152	1	0	0	0	0	0	0	0	1	5091	1103	39	4		4	ELAVL1	19	8028583	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	343812	8028583	51100400	377	131568											
MUC16	94025	broad.mit.edu	37	chr19	9068783	9068783	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagaggtgcctgagaagaGagagagttggcttcttctgc	16	6	2	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9068783	T	T	9068783	2	4	152	1	0	0	0	0	0	0	0	1	10067	929	33	3		3	MUC16	19	9068783	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	1040200	9068783	50060200	378	131569											
KEAP1	9817	broad.mit.edu	37	chr19	10602329	10602329	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcgatgacccccacccCgatgcggttacggggcacgc	12	17	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10602329	T	T	10602329	3	4	152	1	0	0	0	0	1	0	0	0	8211	652	23	4	641	4	KEAP1	19	10602329	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	1533546	10602329	48526654	379	131570											
ZNF653	115950	broad.mit.edu	37	chr19	11598552	11598552	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacgtcaaagggaatgtgCacgccctcctgagtgatgag	14	9	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11598552	A	A	11598552	2	1	152	1	0	0	0	0	0	0	0	1	18193	697	25	3		3	ZNF653	19	11598552	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	996223	11598552	47530431	380	131571											
RYR1	6261	broad.mit.edu	37	chr19	38948943	38948943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggacaggtacctgaccCcttccaggggaccctcaccc	9	18	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38948943	A	A	38948943	1	1	152	0	1	0	0	0	0	0	0	0	13879	638	22	2		2	RYR1	19	38948943	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	27350391	38948943	20180040	381	131572											
RINL	126432	broad.mit.edu	37	chr19	39361733	39361733	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaacctggatcatgtctctGagcagcctctggctctgttt	9	12	4	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39361733	T	T	39361733	3	4	152	1	0	0	0	0	1	0	0	0	13486	1299	45	3	1138	3	RINL	19	39361733	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	412790	39361733	19767250	382	131573											
PPP1R13L	10848	broad.mit.edu	37	chr19	45901299	45901299	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcgggccaggaggcgcGggagagtctgaccacagcga	18	12	1	2	rs35414341	byFrequency;by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45901299	T	T	45901299	2	4	152	1	0	0	0	0	0	0	0	1	12459	1103	39	1		1	PPP1R13L	19	45901299	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	6539566	45901299	13227684	383	131574											
PNMAL2	57469	broad.mit.edu	37	chr19	46998168	46998168	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcgcgggagcagacggCcgtcctcctcggcttctctt	11	17	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46998168	A	A	46998168	2	1	152	1	0	0	0	0	0	0	0	1	12253	726	26	3		3	PNMAL2	19	46998168	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	1096869	46998168	12130815	384	131575											
NLRP4	147945	broad.mit.edu	37	chr19	56382227	56382227	+	Frame_Shift_Del	DEL	G	-	-													acctcagcgagcagtgctgcGaatacatctctgaaatgctt							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56382227	-	-	56382227	7	5	152	1	0	1	0	1	0	0	0	0	10574	1059	37	0	2411	0	NLRP4	19	56382227	Frame_Shift_Del	DEL	G	TCGA-50-5051-01A-21D-1855-08	9384059	56382227	2746756	385	131576											
PLCB1	23236	broad.mit.edu	37	chr20	8702951	8702951	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgttacaaatgctgtaaAgctaaatgttgaaatggtga	10	3	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8702951	T	T	8702951	1	4	152	0	1	0	0	0	0	0	0	0	12122	87	3	5		5	PLCB1	20	8702951	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08		8702951	54322569	386	131577											
PLCB4	5332	broad.mit.edu	37	chr20	9449216	9449221	+	Splice_Site	DEL	AGGGAA	-	-													ttttcttgtttttaatacatAgggaaagcaaggaaatgcga							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9449221	-	-	9449216	8	5	152	1	0	1	0	1	0	0	1	0	12125	434	15	0	3377	0	PLCB4	20	9449216	Splice_Site	DEL	AGGGAA	TCGA-50-5051-01A-21D-1855-08	746265	9449216	53576304	387	131578											
SEL1L2	80343	broad.mit.edu	37	chr20	13830946	13830946	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagcagccatgtcgtacaatCttctggccaagtgaatgtcc	10	11	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13830946	T	T	13830946	3	4	152	1	0	0	0	0	1	0	0	0	14124	913	32	4	236	4	SEL1L2	20	13830946	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	4381730	13830946	49194574	388	131579											
C20orf3	57136	broad.mit.edu	37	chr20	24944589	24944589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcttctccggaaggcacCgctgtcgctgagttctagga	13	12	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24944589	A	A	24944589	3	1	152	1	0	0	0	0	1	0	0	0	2131	652	23	1	143	1	C20orf3	20	24944589	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	11113643	24944589	38080931	389	131580											
PTPRT	11122	broad.mit.edu	37	chr20	40714294	40714294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactcttggctggctcagcGggatcctctctcggcagcct	12	14	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40714294	T	T	40714294	1	4	152	0	1	0	0	0	0	0	0	0	12920	1131	39	1		1	PTPRT	20	40714294	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	15769705	40714294	22311226	390	131581											
JPH2	57158	broad.mit.edu	37	chr20	42744351	42744351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccagtgcggcctccttcCgcgccttcttcttggccccc	9	21	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42744351	A	A	42744351	3	1	152	1	0	0	0	0	1	0	0	0	8031	652	23	1	134	1	JPH2	20	42744351	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2030057	42744351	20281169	391	131582											
ZMYND8	23613	broad.mit.edu	37	chr20	45920590	45920590	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagatgtattccgcatagtCagggtgctgttccaatggaa	12	7	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45920590	A	A	45920590	3	1	152	1	0	0	0	0	1	0	0	0	17837	826	29	3	3028	3	ZMYND8	20	45920590	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	3176239	45920590	17104930	392	131583											
DDX27	55661	broad.mit.edu	37	chr20	47859245	47859245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaagtcatcatggagccCttggtattcttttttttttt	6	6	3	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47859245	A	A	47859245	1	1	152	0	1	0	0	0	0	0	0	0	4387	696	24	2		2	DDX27	20	47859245	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1938655	47859245	15166275	393	131584											
PTGIS	5740	broad.mit.edu	37	chr20	48140834	48140834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatcccacacccagggCtggccaggcatgacctccca	8	19	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48140834	A	A	48140834	1	1	152	0	1	0	0	0	0	0	0	0	12858	812	28	3		3	PTGIS	20	48140834	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	281589	48140834	14884686	394	131585											
ZNF217	7764	broad.mit.edu	37	chr20	52198897	52198897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccgcacatgttacaccCgtaagtgaaagaatctttgt	7	10	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52198897	A	A	52198897	3	1	152	1	0	0	0	0	1	0	0	0	17898	652	23	1	2693	1	ZNF217	20	52198897	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	4058063	52198897	10826623	395	131586											
APP	351	broad.mit.edu	37	chr21	27284177	27284177	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttcgtttcggtcaaagaTggcatgagagcatcgtttcc	11	8	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27284177	A	A	27284177	2	1	152	1	0	0	0	0	0	0	0	1	817	1451	51	5		5	APP	21	27284177	Silent	SNP	T	TCGA-50-5051-01A-21D-1855-08		27284177	20845718	396	131587											
ADAMTS1	9510	broad.mit.edu	37	chr21	28210756	28210756	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataggtgttttaaaacttActttgcactagtaactgatc	6	6	0	1	rs113268450		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28210756	G	G	28210756	5	3	152	1	0	0	0	0	0	0	1	0	255	405	14	5	705	5	ADAMTS1	21	28210756	Splice_Site	SNP	A	TCGA-50-5051-01A-21D-1855-08	926579	28210756	19919139	397	131588											
IGSF5	150084	broad.mit.edu	37	chr21	41142768	41142768	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaacttaaaaaaaaaaAgaaaaaaaaaaagaaaactt	3	3	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41142768	G	G	41142768	1	3	152	0	1	0	0	0	0	0	0	0	7672	87	3	5		5	IGSF5	21	41142768	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	12932012	41142768	6987127	398	131589											
PCNT	5116	broad.mit.edu	37	chr21	47831250	47831250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcagcacgagctgtccCtcatggggcctgtggtgcac	14	13	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47831250	A	A	47831250	3	1	152	1	0	0	0	0	1	0	0	0	11684	681	24	2	5373	2	PCNT	21	47831250	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	6688482	47831250	298645	399	131590											
DIP2A	23181	broad.mit.edu	37	chr21	47981678	47981678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggttcgtttggtagaacGgggttctccgcacagcctgc	14	10	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47981678	T	T	47981678	3	4	152	1	0	0	0	0	1	0	0	0	4567	1116	39	1	4296	1	DIP2A	21	47981678	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	150428	47981678	148217	400	131591											
SEPT5	5413	broad.mit.edu	37	chr22	19709133	19709133	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcaattacgctcaccgGgtgtgagcctttctccctcc	9	16	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19709133	A	A	19709133	1	1	152	0	1	0	0	0	0	0	0	0	14180	1247	43	4		4	SEPT5	22	19709133	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08		19709133	31595433	401	131592											
ZNF280B	140883	broad.mit.edu	37	chr22	22843165	22843165	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatccctgagtttagcccTtttgggatttatgctgttta	8	9	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22843165	C	C	22843165	3	2	152	1	0	0	0	0	1	0	0	0	17941	1608	56	5	1076	5	ZNF280B	22	22843165	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08	3134032	22843165	28461401	402	131593											
FRMPD4	9758	broad.mit.edu	37	chrX	12708257	12708257	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttttcagtcatggtagaCtccacaagatggcagcttcg	9	11	2	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12708257	T	T	12708257	1	4	152	0	1	0	0	0	0	0	0	0	6119	580	20	4		4	FRMPD4	23	12708257	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08		12708257	142562303	403	131594											
SCML2	10389	broad.mit.edu	37	chrX	18260483	18260483	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcccccaccatccacacaGcatccaaatgaagggcctgc	7	17	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18260483	A	A	18260483	1	1	152	0	1	0	0	0	0	0	0	0	14023	986	34	4		4	SCML2	23	18260483	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	5552226	18260483	137010077	404	131595											
CXorf23	256643	broad.mit.edu	37	chrX	19948084	19948084	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaaaaaggaattaaAtgctaaaactacaccttcca	5	7	0	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19948084	G	G	19948084	1	3	152	0	1	0	0	0	0	0	0	0	4136	116	4	5		5	CXorf23	23	19948084	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	1687601	19948084	135322476	405	131596											
ACOT9	23597	broad.mit.edu	37	chrX	23723544	23723544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatattcccacacacaccCagactggtccgaaatgtttc	5	14	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23723544	A	A	23723544	1	1	152	0	1	0	0	0	0	0	0	0	157	609	21	2		2	ACOT9	23	23723544	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	3775460	23723544	131547016	406	131597											
CXorf58	254158	broad.mit.edu	37	chrX	23933857	23933857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatactgaagaaagtggcccCcttagaggctaagcttatta	9	8	0	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23933857	A	A	23933857	3	1	152	1	0	0	0	0	1	0	0	0	4147	623	22	2	267	2	CXorf58	23	23933857	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	210313	23933857	131336703	407	131598											
EFHC2	80258	broad.mit.edu	37	chrX	44108242	44108242	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccccagggctggcatagaGgtggcactcaatgaatattt	11	9	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44108242	A	A	44108242	1	1	152	0	1	0	0	0	0	0	0	0	4987	1015	35	4		4	EFHC2	23	44108242	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	20174385	44108242	111162318	408	131599											
FTSJ1	24140	broad.mit.edu	37	chrX	48340130	48340131	+	Intron	DNP	GG	AT	AT													gctggagcatgggccaccctGggggactctgccacacctta							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	48340131	AT	AT	48340130	1	1	152	0	1	0	0	0	0	0	0	0	6147	1363	47	4		4	FTSJ1	23	48340130	Intron	DNP	GG	TCGA-50-5051-01A-21D-1855-08	4231888	48340130	106930430	409	131600											
PQBP1	10084	broad.mit.edu	37	chrX	48755717	48755717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgggaggcgcttggttacGggatccagataggaatcttt	14	7	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48755717	T	T	48755717	1	4	152	0	1	0	0	0	0	0	0	0	12518	1131	39	1		1	PQBP1	23	48755717	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	415587	48755717	106514843	410	131601											
AKAP4	8852	broad.mit.edu	37	chrX	49962279	49962279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggtgaatttagaaaaaCtctagagaaaggggcataat	12	3	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49962279	A	A	49962279	1	1	152	0	1	0	0	0	0	0	0	0	453	580	20	3		3	AKAP4	23	49962279	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1206562	49962279	105308281	411	131602											
CCNB3	85417	broad.mit.edu	37	chrX	50057064	50057065	+	Intron	DNP	CC	AA	AA													gagttgaataagctgtggttCctgccctcaaggagctcatg							TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50057065	AA	AA	50057064	1	1	152	0	1	0	0	0	0	0	0	0	2944	870	30	3		3	CCNB3	23	50057064	Intron	DNP	CC	TCGA-50-5051-01A-21D-1855-08	94785	50057064	105213496	412	131603											
FAM104B	90736	broad.mit.edu	37	chrX	55170121	55170121	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgagcccctacttgacCcaggaagcccagctggaacc	9	15	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55170121	A	A	55170121	1	1	152	0	1	0	0	0	0	0	0	0	5432	638	22	2		2	FAM104B	23	55170121	3'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	5113057	55170121	100100439	413	131604											
FAM123B	139285	broad.mit.edu	37	chrX	63411180	63411180	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgccaggcccatcaCtgatgggcctaagggcctca	11	16	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63411180	T	T	63411180	3	4	152	1	0	0	0	0	1	0	0	0	5469	565	20	4	1424	4	FAM123B	23	63411180	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	8241059	63411180	91859380	414	131605											
ZC3H12B	340554	broad.mit.edu	37	chrX	64722773	64722773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcatgccagctgggaccCgctgccctgtacaactgact	10	15	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64722773	A	A	64722773	3	1	152	1	0	0	0	0	1	0	0	0	17688	652	23	1	2213	1	ZC3H12B	23	64722773	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	1311593	64722773	90547787	415	131606											
AR	367	broad.mit.edu	37	chrX	66905852	66905852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtatttgttctcccagGgaaacagaagtacctgtgcg	10	9	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66905852	T	T	66905852	3	4	152	1	0	0	0	0	1	0	0	0	838	1246	43	2	1803	2	AR	23	66905852	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	2183079	66905852	88364708	416	131607											
AWAT2	158835	broad.mit.edu	37	chrX	69261742	69261742	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacgtagggcatcaatataGagtgtgtgatatttagccac	10	6	1	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69261742	T	T	69261742	2	4	152	1	0	0	0	0	0	0	0	1	1240	929	33	3		3	AWAT2	23	69261742	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	2355890	69261742	86008818	417	131608											
MED12	9968	broad.mit.edu	37	chrX	70347271	70347271	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttatctctatgatctgTacacctcctgtagccattta	5	11	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70347271	C	C	70347271	3	2	152	1	0	0	0	0	1	0	0	0	9521	1638	57	5	3017	5	MED12	23	70347271	Missense_Mutation	SNP	T	TCGA-50-5051-01A-21D-1855-08	1085529	70347271	84923289	418	131609											
ACRC	93953	broad.mit.edu	37	chrX	70823862	70823862	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgattcggaagctccCgacgacagcagtgatgattc	12	9	0	4			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823862	A	A	70823862	2	1	152	1	0	0	0	0	0	0	0	1	171	639	23	1		1	ACRC	23	70823862	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	476591	70823862	84446698	419	131610											
RGAG4	340526	broad.mit.edu	37	chrX	71349706	71349706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgaattcggccacgagcaGctcggtggcccccctgtctc	11	17	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71349706	T	T	71349706	3	4	152	1	0	0	0	0	1	0	0	0	13383	971	34	3	28	3	RGAG4	23	71349706	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	525844	71349706	83920854	420	131611											
FAM46D	169966	broad.mit.edu	37	chrX	79698296	79698296	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataaggatctggacgttatTtttggtgttgagcttccagg	12	5	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79698296	A	A	79698296	2	1	152	1	0	0	0	0	0	0	0	1	5619	1829	64	5		5	FAM46D	23	79698296	Silent	SNP	T	TCGA-50-5051-01A-21D-1855-08	8348590	79698296	75572264	421	131612											
PCDH19	57526	broad.mit.edu	37	chrX	99661991	99661991	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggaaggccgccgtccttGgccagcaccttgaattcgaa	13	12	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99661991	A	A	99661991	2	1	152	1	0	0	0	0	0	0	0	1	11608	1335	47	4		4	PCDH19	23	99661991	Silent	SNP	G	TCGA-50-5051-01A-21D-1855-08	19963695	99661991	55608569	422	131613											
BTK	695	broad.mit.edu	37	chrX	100608447	100608447	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatcagttggttccccgctCtgtgctttttatattttgcc	8	10	2	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100608447	A	A	100608447	1	1	152	0	1	0	0	0	0	0	0	0	1567	928	32	3		3	BTK	23	100608447	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	946456	100608447	54662113	423	131614											
NXF3	56000	broad.mit.edu	37	chrX	102332727	102332727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggacacctccccaccCgctacaaggatctttttcct	7	15	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102332727	A	A	102332727	1	1	152	0	1	0	0	0	0	0	0	0	10880	667	23	1		1	NXF3	23	102332727	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	1724280	102332727	52937833	424	131615											
GUCY2F	2986	broad.mit.edu	37	chrX	108638636	108638636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagcactgcttcatcagCtggagacattctggaggggc	13	12	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108638636	A	A	108638636	3	1	152	1	0	0	0	0	1	0	0	0	6963	796	28	3	1000	3	GUCY2F	23	108638636	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	6305909	108638636	46631924	425	131616											
TRPC5	7224	broad.mit.edu	37	chrX	111097166	111097166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttcttgatgaacagccCaaggttgctcctgggtgaga	14	8	1	3			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111097166	A	A	111097166	3	1	152	1	0	0	0	0	1	0	0	0	16707	594	21	2	1884	2	TRPC5	23	111097166	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	2458530	111097166	44173394	426	131617											
TRPC5	7224	broad.mit.edu	37	chrX	111195408	111195408	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccatgatctccaggttctCgttctcaatggcaatgagca	8	12	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111195408	A	A	111195408	4	1	152	1	0	0	0	0	0	1	0	0	16707	893	31	3	2720	3	TRPC5	23	111195408	Nonsense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	98242	111195408	44075152	427	131618											
FAM70A	55026	broad.mit.edu	37	chrX	119402013	119402013	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catatgcagacaatggaaagGttccataattgaatttaggg	10	5	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119402013	A	A	119402013	1	1	152	0	1	0	0	0	0	0	0	0	5656	1276	44	4		4	FAM70A	23	119402013	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	8206605	119402013	35868547	428	131619											
OCRL	4952	broad.mit.edu	37	chrX	128699671	128699671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccttatcaataatctaccCatttttcttctctccatcct	1	15	4	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128699671	A	A	128699671	1	1	152	0	1	0	0	0	0	0	0	0	10918	609	21	2		2	OCRL	23	128699671	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	9297658	128699671	26570889	429	131620											
BCORL1	63035	broad.mit.edu	37	chrX	129148663	129148663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttccattgccgaaccagCgcaagacaccccccatgcct	7	18	0	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129148663	A	A	129148663	3	1	152	1	0	0	0	0	1	0	0	0	1392	768	27	3	1925	3	BCORL1	23	129148663	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	448992	129148663	26121897	430	131621											
MBNL3	55796	broad.mit.edu	37	chrX	131573468	131573468	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagatgggactcacctttaGagaatcaaaacaggccacca	8	11	3	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131573468	T	T	131573468	3	4	152	1	0	0	0	0	1	0	0	0	9448	933	33	3	1016	3	MBNL3	23	131573468	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	2424805	131573468	23697092	431	131622											
VGLL1	51442	broad.mit.edu	37	chrX	135638789	135638789	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaatgaaagctgctcaCacccacttgcctccccaatc	4	15	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135638789	G	G	135638789	1	3	152	0	1	0	0	0	0	0	0	0	17285	493	17	4		4	VGLL1	23	135638789	3'UTR	SNP	C	TCGA-50-5051-01A-21D-1855-08	4065321	135638789	19631771	432	131623											
MAGEC1	9947	broad.mit.edu	37	chrX	140994335	140994335	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctgggagcccctccttctCctccactttactgagtcttt	6	16	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140994335	G	G	140994335	3	3	152	1	0	0	0	0	1	0	0	0	9272	855	30	4	1151	4	MAGEC1	23	140994335	Missense_Mutation	SNP	C	TCGA-50-5051-01A-21D-1855-08	5355546	140994335	14276225	433	131624											
MAGEC2	51438	broad.mit.edu	37	chrX	141290894	141290894	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggaattcataatatggagGagaactgtggggcacctccc	12	9	1	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141290894	T	T	141290894	3	4	152	1	0	0	0	0	1	0	0	0	9273	1174	41	3	245	3	MAGEC2	23	141290894	Missense_Mutation	SNP	G	TCGA-50-5051-01A-21D-1855-08	296559	141290894	13979666	434	131625											
AFF2	2334	broad.mit.edu	37	chrX	147967585	147967585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggaatggctttgacatGctttgacatgcgcaaacttc	9	9	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147967585	T	T	147967585	1	4	152	0	1	0	0	0	0	0	0	0	357	1334	46	3		3	AFF2	23	147967585	Intron	SNP	G	TCGA-50-5051-01A-21D-1855-08	6676691	147967585	7302975	435	131626											
MAMLD1	10046	broad.mit.edu	37	chrX	149638271	149638271	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaatggcaacatcatgggCtcaccatttgtagtaccaca	8	10	2	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149638271	A	A	149638271	2	1	152	1	0	0	0	0	0	0	0	1	9300	784	28	3		3	MAMLD1	23	149638271	Silent	SNP	C	TCGA-50-5051-01A-21D-1855-08	1670686	149638271	5632289	436	131627											
MTM1	4534	broad.mit.edu	37	chrX	149764895	149764895	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttctagtggcttgtattCctagttgcttaaaaacagtg	8	6	1	0			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149764895	T	T	149764895	1	4	152	0	1	0	0	0	0	0	0	0	10031	870	30	4		4	MTM1	23	149764895	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	126624	149764895	5505665	437	131628											
BGN	633	broad.mit.edu	37	chrX	152772496	152772496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtccgtgtcattctccCgctcacaggctgggcctagg	12	13	3	1			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152772496	A	A	152772496	1	1	152	0	1	0	0	0	0	0	0	0	1424	667	23	1		1	BGN	23	152772496	Intron	SNP	C	TCGA-50-5051-01A-21D-1855-08	3007601	152772496	2498064	438	131629											
TKTL1	8277	broad.mit.edu	37	chrX	153557721	153557721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaactggcagtttagaatgAgaactccgcaggcccatcgg	12	10	0	2			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153557721	T	T	153557721	1	4	152	0	1	0	0	0	0	0	0	0	16058	319	11	5		5	TKTL1	23	153557721	Intron	SNP	A	TCGA-50-5051-01A-21D-1855-08	785225	153557721	1712839	439	131630											
ZRANB2	9406	broad.mit.edu	37	chr1	71546571	71546571	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgccggacggacctcggAaagcttccactaacaaactc	8	13	0	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71546571	C	C	71546571	1	2	153	0	1	0	0	0	0	0	0	0	18352	261	9	5		5	ZRANB2	1	71546571	Intron	SNP	A	TCGA-50-5055-01A-01D-1625-08		71546571	177704050	1	131631											
GDAP2	54834	broad.mit.edu	37	chr1	118429402	118429402	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaaggaagtataagttgcTcaaatttcatcttccaattt	5	7	3	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118429402	C	C	118429402	1	2	153	0	1	0	0	0	0	0	0	0	6372	1566	54	5		5	GDAP2	1	118429402	Intron	SNP	T	TCGA-50-5055-01A-01D-1625-08	46882831	118429402	130821219	2	131632											
HMCN1	83872	broad.mit.edu	37	chr1	185902810	185902810	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaatgacagagatgtcaGactggcagagccagcgagaa	15	7	1	5			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185902810	A	A	185902810	3	1	153	1	0	0	0	0	1	0	0	0	7287	942	33	4	1724	4	HMCN1	1	185902810	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08	67473408	185902810	63347811	3	131633											
TPR	7175	broad.mit.edu	37	chr1	186302290	186302290	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtggaagtagaaggccgctCaactggtgaactctgaacaa	12	8	2	3			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186302290	G	G	186302290	3	3	153	1	0	0	0	0	1	0	0	0	16540	835	29	4	1732	4	TPR	1	186302290	Missense_Mutation	SNP	C	TCGA-50-5055-01A-01D-1625-08	399480	186302290	62948331	4	131634											
SLC30A3	7781	broad.mit.edu	37	chr2	27481581	27481581	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagagtggcttgggcaggTatttggagaatggggtttaa	18	2	0	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27481581	G	G	27481581	1	3	153	0	1	0	0	0	0	0	0	0	14670	1653	57	5		5	SLC30A3	2	27481581	Intron	SNP	T	TCGA-50-5055-01A-01D-1625-08		27481581	215717792	5	131635											
XIRP2	129446	broad.mit.edu	37	chr2	167760103	167760104	+	Missense_Mutation	DNP	GC	TT	TT													agccattgtacaattttccaGcctcaggaaagcaaattgct							TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	167760104	TT	TT	167760103	3	4	153	1	0	0	0	0	1	0	0	0	17557	962	34	3	113	3	XIRP2	2	167760103	Missense_Mutation	DNP	GC	TCGA-50-5055-01A-01D-1625-08	140278522	167760103	75439270	6	131636											
XIRP2	129446	broad.mit.edu	37	chr2	168101995	168101995	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattagactctattaataaaTcagaaactgtgtatgttatt	5	5	2	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168101995	A	A	168101995	3	1	153	1	0	0	0	0	1	0	0	0	17557	1435	50	5	4123	5	XIRP2	2	168101995	Missense_Mutation	SNP	T	TCGA-50-5055-01A-01D-1625-08	341892	168101995	75097378	7	131637											
GRAMD1C	54762	broad.mit.edu	37	chr3	113604571	113604571	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatggctttgctgtggcagGtaaactggacaatagcagaa	12	7	0	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113604571	A	A	113604571	1	1	153	0	1	0	0	0	0	0	0	0	6815	1276	44	4		4	GRAMD1C	3	113604571	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08		113604571	84417859	8	131638			1	100		2	2	37	G		5.465541e-05
GRAMD1C	54762	broad.mit.edu	37	chr3	113604607	113604607	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaagcatccttaagaggaGatattacagacagcactgca	9	9	0	4			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113604607	C	C	113604607	1	2	153	0	1	0	0	0	0	0	0	0	6815	957	33	4		4	GRAMD1C	3	113604607	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08	36	113604607	84417823	9	131639			1	100		2	2	37	G		5.465541e-05
ARGFX	503582	broad.mit.edu	37	chr3	121303939	121303939	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccctgtggtgtgcttggtAcccccatccaagccacattc	8	16	0	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121303939	C	C	121303939	1	2	153	0	1	0	0	0	0	0	0	0	861	406	14	5		5	ARGFX	3	121303939	Intron	SNP	A	TCGA-50-5055-01A-01D-1625-08	7699332	121303939	76718491	10	131640											
SI	6476	broad.mit.edu	37	chr3	164733103	164733103	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattatgaagcataagttttCattactacattatcataata	4	5	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164733103	T	T	164733103	1	4	153	0	1	0	0	0	0	0	0	0	14410	841	29	4		4	SI	3	164733103	Intron	SNP	C	TCGA-50-5055-01A-01D-1625-08	43429164	164733103	33289327	11	131641											
UGT2B7	7364	broad.mit.edu	37	chr4	69978332	69978332	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctggttccagtaccacTctttggatgtgattgggttc	10	10	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69978332	G	G	69978332	3	3	153	1	0	0	0	0	1	0	0	0	17088	1551	54	5	1490	5	UGT2B7	4	69978332	Missense_Mutation	SNP	T	TCGA-50-5055-01A-01D-1625-08		69978332	121175944	12	131642											
GPRIN3	285513	broad.mit.edu	37	chr4	90169159	90169159	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgattcccagggactctgcGtccaaggatgcaccatacac	10	14	1	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90169159	A	A	90169159	2	1	153	1	0	0	0	0	0	0	0	1	6797	1136	40	4		4	GPRIN3	4	90169159	Silent	SNP	G	TCGA-50-5055-01A-01D-1625-08	20190827	90169159	100985117	13	131643											
GRIA1	2890	broad.mit.edu	37	chr5	153149875	153149875	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctggagtccaccatgaatGagtacattgagcagcggaaa	11	9	0	3			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153149875	T	T	153149875	4	4	153	1	0	0	0	0	0	1	0	0	6833	1291	45	3	2220	3	GRIA1	5	153149875	Nonsense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08		153149875	27765385	14	131644											
GABRB2	2561	broad.mit.edu	37	chr5	160758167	160758167	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagttagagtaataatGttcctatctcttttcttctt	8	6	3	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160758167	T	T	160758167	1	4	153	0	1	0	0	0	0	0	0	0	6227	1392	48	3		3	GABRB2	5	160758167	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08	7608292	160758167	20157093	15	131645											
GRM6	2916	broad.mit.edu	37	chr5	178408828	178408828	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcaggctcaaggacaCggttagcgtggttgtctgga	15	9	3	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178408828	T	T	178408828	3	4	153	1	0	0	0	0	1	0	0	0	6867	536	19	4	173	4	GRM6	5	178408828	Missense_Mutation	SNP	C	TCGA-50-5055-01A-01D-1625-08	17650661	178408828	2506432	16	131646											
HIVEP1	3096	broad.mit.edu	37	chr6	12120213	12120213	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaatcacctgaaaaaaaTaccaaaatccccactgagaa	5	10	1	3			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12120213	C	C	12120213	3	2	153	1	0	0	0	0	1	0	0	0	7253	1406	49	5	195	5	HIVEP1	6	12120213	Missense_Mutation	SNP	T	TCGA-50-5055-01A-01D-1625-08		12120213	158994854	17	131647											
SLC39A7	7922	broad.mit.edu	37	chr6	33170016	33170016	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaatgcacatctcccttaAtgtctcaatgcctccattcc	5	14	2	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33170016	G	G	33170016	1	3	153	0	1	0	0	0	0	0	0	0	14737	116	4	5		5	SLC39A7	6	33170016	Intron	SNP	A	TCGA-50-5055-01A-01D-1625-08	21049803	33170016	137945051	18	131648											
ABCA13	154664	broad.mit.edu	37	chr7	48266967	48266967	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgagactacacacaagccatGatcatgtggaagatggcatg	11	9	1	3			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48266967	C	C	48266967	3	2	153	1	0	0	0	0	1	0	0	0	31	1290	45	4	428	4	ABCA13	7	48266967	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08		48266967	110871696	19	131649											
IMPDH1	3614	broad.mit.edu	37	chr7	128040468	128040468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcccaccagcttgctgccCatggtgcccgtctcagtgat	10	15	1	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128040468	A	A	128040468	3	1	153	1	0	0	0	0	1	0	0	0	7796	594	21	2	1134	2	IMPDH1	7	128040468	Missense_Mutation	SNP	C	TCGA-50-5055-01A-01D-1625-08	79773501	128040468	31098195	20	131650											
ADAM18	8749	broad.mit.edu	37	chr8	39525666	39525666	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaactgcctattgctataaCggacaatgtcaaactactga	8	9	1	1	rs35144407	byFrequency	TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39525666	T	T	39525666	2	4	153	1	0	0	0	0	0	0	0	1	239	535	19	4		4	ADAM18	8	39525666	Silent	SNP	C	TCGA-50-5055-01A-01D-1625-08		39525666	106838356	21	131651											
CSMD3	114788	broad.mit.edu	37	chr8	113649249	113649249	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatattctgtaaattagagaGaaaaatttccccgcggggga	10	6	1	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113649249	T	T	113649249	1	4	153	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113649249	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08	74123583	113649249	32714773	22	131652											
TTF1	7270	broad.mit.edu	37	chr9	135273509	135273509	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtggatggtcaaagggTgattgtttctaaacttacca	12	6	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135273509	G	G	135273509	1	3	153	0	1	0	0	0	0	0	0	0	16844	1711	59	5		5	TTF1	9	135273509	Intron	SNP	T	TCGA-50-5055-01A-01D-1625-08		135273509	5939922	23	131653											
KCNT1	57582	broad.mit.edu	37	chr9	138657088	138657088	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgactccctcccggccccTagagacgccatcctctcccc	7	22	1	1	rs62583520		TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138657088	C	C	138657088	1	2	153	0	1	0	0	0	0	0	0	0	8161	1537	53	5		5	KCNT1	9	138657088	Intron	SNP	T	TCGA-50-5055-01A-01D-1625-08	3383579	138657088	2556343	24	131654											
CCDC109A	90550	broad.mit.edu	37	chr10	74618992	74618992	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgtgaggctaccatcccGgcgtgaacgctgtcagttca	11	12	3	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74618992	A	A	74618992	3	1	153	1	0	0	0	0	1	0	0	0	2770	1116	39	4	288	4	CCDC109A	10	74618992	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08		74618992	60915755	25	131655											
FNBP4	23360	broad.mit.edu	37	chr11	47772543	47772543	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgttttctccttagaataTatgtctgtatttaccacaaa	4	8	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47772543	C	C	47772543	3	2	153	1	0	0	0	0	1	0	0	0	6025	1396	49	5	2270	5	FNBP4	11	47772543	Missense_Mutation	SNP	T	TCGA-50-5055-01A-01D-1625-08		47772543	87233973	26	131656											
ARRB1	408	broad.mit.edu	37	chr11	74988621	74988621	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaccttcagaagggtctGctgctcccatctgaagtcca	10	13	3	3			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74988621	T	T	74988621	1	4	153	0	1	0	0	0	0	0	0	0	984	1334	46	3		3	ARRB1	11	74988621	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08	27216078	74988621	60017895	27	131657											
CASP5	838	broad.mit.edu	37	chr11	104872965	104872965	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaagcaactttgattacccGagtctcttttcaacccccat	5	13	2	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104872965	A	A	104872965	1	1	153	0	1	0	0	0	0	0	0	0	2700	1073	37	4		4	CASP5	11	104872965	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08	29884344	104872965	30133551	28	131658											
TMEM117	84216	broad.mit.edu	37	chr12	44238567	44238567	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggacccagtttctcataGccaaacagaagccaatgtta	9	10	1	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44238567	A	A	44238567	3	1	153	1	0	0	0	0	1	0	0	0	16154	971	34	4	115	4	TMEM117	12	44238567	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08		44238567	89613328	29	131659											
PRPF40B	25766	broad.mit.edu	37	chr12	50026769	50026769	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaaaggggccttgaccAccattctgtgcccccccccc	9	17	1	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50026769	C	C	50026769	1	2	153	0	1	0	0	0	0	0	0	0	12678	174	6	5		5	PRPF40B	12	50026769	Intron	SNP	A	TCGA-50-5055-01A-01D-1625-08	5788202	50026769	83825126	30	131660											
ATP2A2	488	broad.mit.edu	37	chr12	110777244	110777244	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaattgagatgttcttgcCagggttaagatcccggtgaa	12	7	1	3			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110777244	G	G	110777244	1	3	153	0	1	0	0	0	0	0	0	0	1141	609	21	4		4	ATP2A2	12	110777244	Intron	SNP	C	TCGA-50-5055-01A-01D-1625-08	60750475	110777244	23074651	31	131661											
P2RX7	5027	broad.mit.edu	37	chr12	121618278	121618278	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtaagttaaatcattttgtCttttttttttttttaagaaa	4	2	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121618278	T	T	121618278	1	4	153	0	1	0	0	0	0	0	0	0	11439	928	32	4		4	P2RX7	12	121618278	Intron	SNP	C	TCGA-50-5055-01A-01D-1625-08	10841034	121618278	12233617	32	131662											
KNTC1	9735	broad.mit.edu	37	chr12	123109155	123109155	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattttgtagtttagatgaaGcttcagtcttgataactgaa	9	4	2	4			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123109155	A	A	123109155	3	1	153	1	0	0	0	0	1	0	0	0	8499	971	34	4	6772	4	KNTC1	12	123109155	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08	1490877	123109155	10742740	33	131663											
FKBP3	2287	broad.mit.edu	37	chr14	45587247	45587247	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacttggcatcaggctgtcCtttctttccgtaagcccatt	7	12	2	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45587247	T	T	45587247	3	4	153	1	0	0	0	0	1	0	0	0	5966	690	24	4	78	4	FKBP3	14	45587247	Missense_Mutation	SNP	C	TCGA-50-5055-01A-01D-1625-08		45587247	61762293	34	131664											
BMP4	652	broad.mit.edu	37	chr14	54416746	54416746	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctatcctcaaggactgcctGatctcagcggcacccacatc	7	16	3	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54416746	A	A	54416746	1	1	153	0	1	0	0	0	0	0	0	0	1468	1305	45	4		4	BMP4	14	54416746	3'UTR	SNP	G	TCGA-50-5055-01A-01D-1625-08	8829499	54416746	52932794	35	131665											
BCL11B	64919	broad.mit.edu	37	chr14	99723900	99723900	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggatcccgatctccaccGgctcggacactttcctgagc	9	16	1	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99723900	A	A	99723900	3	1	153	1	0	0	0	0	1	0	0	0	1369	1116	39	4	2361	4	BCL11B	14	99723900	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08	45307154	99723900	7625640	36	131666											
TMEM87A	25963	broad.mit.edu	37	chr15	42519862	42519862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtcatcaacaccatcaGttgtttataagacagtacat	5	10	3	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42519862	T	T	42519862	1	4	153	0	1	0	0	0	0	0	0	0	16333	1044	36	3		3	TMEM87A	15	42519862	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08		42519862	60011530	37	131667											
SHF	90525	broad.mit.edu	37	chr15	45470302	45470302	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccttagacttgtgagtcGcaaagcctgttctgcagagc	11	10	1	3			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45470302	A	A	45470302	1	1	153	0	1	0	0	0	0	0	0	0	14390	1102	38	4		4	SHF	15	45470302	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08	2950440	45470302	57061090	38	131668											
ADAM10	102	broad.mit.edu	37	chr15	58936033	58936033	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgtgtgtgtgtaaacaTagtctggactgtttcacttt	10	5	2	0			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58936033	C	C	58936033	1	2	153	0	1	0	0	0	0	0	0	0	234	1421	49	5		5	ADAM10	15	58936033	Intron	SNP	T	TCGA-50-5055-01A-01D-1625-08	13465731	58936033	43595359	39	131669											
THSD4	79875	broad.mit.edu	37	chr15	71535077	71535077	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagacagacactgcacacaCgccacagaggctccggagac	11	15	0	4			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71535077	T	T	71535077	3	4	153	1	0	0	0	0	1	0	0	0	16001	536	19	4	568	4	THSD4	15	71535077	Missense_Mutation	SNP	C	TCGA-50-5055-01A-01D-1625-08	12599044	71535077	30996315	40	131670											
NFATC3	4775	broad.mit.edu	37	chr16	68160359	68160359	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgtttgtagcacatcttCattacctccactagactggc	6	11	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68160359	T	T	68160359	3	4	153	1	0	0	0	0	1	0	0	0	10459	838	29	4	1257	4	NFATC3	16	68160359	Missense_Mutation	SNP	C	TCGA-50-5055-01A-01D-1625-08		68160359	22194394	41	131671											
CNTNAP1	8506	broad.mit.edu	37	chr17	40847632	40847632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttctcccacatgctgaGccggccagtgccaggctatg	13	13	1	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40847632	T	T	40847632	3	4	153	1	0	0	0	0	1	0	0	0	3678	971	34	3	3160	3	CNTNAP1	17	40847632	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08		40847632	40347578	42	131672											
C18orf8	29919	broad.mit.edu	37	chr18	21109024	21109024	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgtatctaagtagagaaAgtgttttccgctcatatcct	8	7	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21109024	C	C	21109024	1	2	153	0	1	0	0	0	0	0	0	0	1926	87	3	5		5	C18orf8	18	21109024	Intron	SNP	A	TCGA-50-5055-01A-01D-1625-08		21109024	56968224	43	131673											
GRIK5	2901	broad.mit.edu	37	chr19	42507507	42507507	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcggactcagctgacctccGtgtggaccatatgaattcca	9	13	1	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42507507	A	A	42507507	3	1	153	1	0	0	0	0	1	0	0	0	6843	1144	40	4	459	4	GRIK5	19	42507507	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08		42507507	16621476	44	131674											
PSG6	5675	broad.mit.edu	37	chr19	43596049	43596049	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacagaacaaaaggaaagGccatcatacctgccagtctt	8	10	2	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43596049	A	A	43596049	1	1	153	0	1	0	0	0	0	0	0	0	12765	1218	42	4		4	PSG6	19	43596049	Intron	SNP	G	TCGA-50-5055-01A-01D-1625-08	1088542	43596049	15532934	45	131675											
TRIOBP	11078	broad.mit.edu	37	chr22	38120812	38120812	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccagaacatcctgtgcccAgcgggacaatcccagagcct	9	17	0	2			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38120812	C	C	38120812	3	2	153	1	0	0	0	0	1	0	0	0	16678	188	7	5	2267	5	TRIOBP	22	38120812	Missense_Mutation	SNP	A	TCGA-50-5055-01A-01D-1625-08		38120812	13183754	46	131676											
CYBB	1536	broad.mit.edu	37	chrX	37663304	37663304	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagtatccatatccgcatcGttggggactggacagagggg	14	8	0	1			TCGA-50-5055-01A-01D-1625-08	TCGA-50-5055-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37663304	C	C	37663304	3	2	153	1	0	0	0	0	1	0	0	0	4166	1145	40	4	1106	4	CYBB	23	37663304	Missense_Mutation	SNP	G	TCGA-50-5055-01A-01D-1625-08		37663304	117607256	47	131677											
CAMTA1	23261	broad.mit.edu	37	chr1	7797473	7797473	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagtgtctggagcacctgcaGagagatgagcaggctcagct	15	9	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7797473	C	C	7797473	3	2	154	1	0	0	0	0	1	0	0	0	2639	933	33	4	3559	4	CAMTA1	1	7797473	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08		7797473	241453148	1	131678											
NBPF1	55672	broad.mit.edu	37	chr1	16895567	16895567	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcacaatggagtactcaCcgcctatgtcaacagccatg	7	14	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16895567	A	A	16895567	5	1	154	1	0	0	0	0	0	0	1	0	10286	521	18	3	837	3	NBPF1	1	16895567	Splice_Site	SNP	C	TCGA-50-5066-01A-01D-1625-08	9098094	16895567	232355054	2	131679											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17907141	17907141	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccataggtaccgtacccagGgcttcctgtccctctcatcc	8	17	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17907141	C	C	17907141	1	2	154	0	1	0	0	0	0	0	0	0	897	1247	43	4		4	ARHGEF10L	1	17907141	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1011574	17907141	231343480	3	131680											
AKR7A3	22977	broad.mit.edu	37	chr1	19611103	19611103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgaggaaaggccttaccCcaggagcagcccaggacttc	12	14	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19611103	A	A	19611103	1	1	154	0	1	0	0	0	0	0	0	0	476	638	22	2		2	AKR7A3	1	19611103	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1703962	19611103	229639518	4	131681											
EYA3	2140	broad.mit.edu	37	chr1	28362227	28362227	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaaacttttgtgtgAtttactttagtaacgaaaaa	5	4	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28362227	T	T	28362227	1	4	154	0	1	0	0	0	0	0	0	0	5373	348	12	5		5	EYA3	1	28362227	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	8751124	28362227	220888394	5	131682											
MECR	51102	broad.mit.edu	37	chr1	29543143	29543143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattgataggggccgccagCatcttcacacggacatctga	12	11	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29543143	A	A	29543143	3	1	154	1	0	0	0	0	1	0	0	0	9517	710	25	3	926	3	MECR	1	29543143	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1180916	29543143	219707478	6	131683											
SPOCD1	90853	broad.mit.edu	37	chr1	32265567	32265567	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccactcccacgtcctcccTgacccatgctccagtgaagg	7	20	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32265567	A	A	32265567	1	1	154	0	1	0	0	0	0	0	0	0	15196	1595	55	5		5	SPOCD1	1	32265567	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	2722424	32265567	216985054	7	131684											
ZC3H12A	80149	broad.mit.edu	37	chr1	37941031	37941031	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttaggagagagcgctattCaccgtccctaaccctgttgg	12	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37941031	T	T	37941031	1	4	154	0	1	0	0	0	0	0	0	0	17687	841	29	4		4	ZC3H12A	1	37941031	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5675464	37941031	211309590	8	131685											
EPHA10	284656	broad.mit.edu	37	chr1	38227423	38227423	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcagcttcatcttgcgCtcacccaggtcgccctgcgt	10	15	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38227423	T	T	38227423	2	4	154	1	0	0	0	0	0	0	0	1	5208	796	28	4		4	EPHA10	1	38227423	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	286392	38227423	211023198	9	131686											
COL9A2	1298	broad.mit.edu	37	chr1	40771464	40771464	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggaaaacagttctcaggtCagtctgggtggcccagtcag	13	10	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40771464	T	T	40771464	1	4	154	0	1	0	0	0	0	0	0	0	3740	841	29	4		4	COL9A2	1	40771464	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	2544041	40771464	208479157	10	131687											
CYP4A11	1579	broad.mit.edu	37	chr1	47395892	47395892	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaatggggatggggatcctGgtgggatcaggcagcagctc	18	8	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47395892	C	C	47395892	2	2	154	1	0	0	0	0	0	0	0	1	4216	1335	47	4		4	CYP4A11	1	47395892	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	6624428	47395892	201854729	11	131688											
INADL	10207	broad.mit.edu	37	chr1	62329964	62329964	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtggatgaaccatttctaGatctgggaaagtctttccat	9	7	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62329964	T	T	62329964	3	4	154	1	0	0	0	0	1	0	0	0	7801	942	33	3	2568	3	INADL	1	62329964	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	14934072	62329964	186920657	12	131689											
DNAJC6	9829	broad.mit.edu	37	chr1	65878623	65878623	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggctactgggcaaccctAtgaacaatacgcaaagatga	9	10	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65878623	G	G	65878623	3	3	154	1	0	0	0	0	1	0	0	0	4693	449	16	5	2731	5	DNAJC6	1	65878623	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	3548659	65878623	183371998	13	131690											
SGIP1	84251	broad.mit.edu	37	chr1	67161182	67161182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgacttttgaaggtaagTagtgcatagcataccagatt	9	5	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67161182	C	C	67161182	1	2	154	0	1	0	0	0	0	0	0	0	14319	1653	57	5		5	SGIP1	1	67161182	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	1282559	67161182	182089439	14	131691											
RPE65	6121	broad.mit.edu	37	chr1	68904894	68904894	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccatggtttcattggactCaaaacaatccatgtagttgg	8	10	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68904894	G	G	68904894	3	3	154	1	0	0	0	0	1	0	0	0	13656	835	29	4	791	4	RPE65	1	68904894	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1743712	68904894	180345727	15	131692											
PTGER3	5733	broad.mit.edu	37	chr1	71439908	71439908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatggtctgcctttgtaGcatcaactccgattagaaca	9	9	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71439908	T	T	71439908	1	4	154	0	1	0	0	0	0	0	0	0	12850	986	34	3		3	PTGER3	1	71439908	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	2535014	71439908	177810713	16	131693											
RABGGTB	5876	broad.mit.edu	37	chr1	76260133	76260133	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatggtaaaggtcaggtattCataatttgaagttaaagaag	10	2	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76260133	T	T	76260133	1	4	154	0	1	0	0	0	0	0	0	0	13076	841	29	4		4	RABGGTB	1	76260133	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	4820225	76260133	172990488	17	131694											
GBP4	115361	broad.mit.edu	37	chr1	89656943	89656943	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggacaaaaaaagactcaCgctttccagtgacaatgatt	8	8	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89656943	A	A	89656943	5	1	154	1	0	0	0	0	0	0	1	0	6338	550	19	3	1029	3	GBP4	1	89656943	Splice_Site	SNP	C	TCGA-50-5066-01A-01D-1625-08	13396810	89656943	159593678	18	131695											
GBP5	115362	broad.mit.edu	37	chr1	89732274	89732274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactctttgatcactacctGgagaataaaaaataggattt	7	6	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89732274	T	T	89732274	1	4	154	0	1	0	0	0	0	0	0	0	6339	1363	47	2		2	GBP5	1	89732274	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	75331	89732274	159518347	19	131696											
GBP5	115362	broad.mit.edu	37	chr1	89733118	89733118	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcagtaggtcgatagcaCcctgatcaattttgttcaca	8	10	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89733118	G	G	89733118	3	3	154	1	0	0	0	0	1	0	0	0	6339	507	18	4	1382	4	GBP5	1	89733118	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	844	89733118	159517503	20	131697											
CDC7	8317	broad.mit.edu	37	chr1	91973559	91973559	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattctattttccttttttAgtcttggttttcattactat	3	8	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91973559	G	G	91973559	1	3	154	0	1	0	0	0	0	0	0	0	3114	435	15	5		5	CDC7	1	91973559	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	2240441	91973559	157277062	21	131698											
NTNG1	22854	broad.mit.edu	37	chr1	107691475	107691475	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaatggtgaggtaaccctTttgcataaaatatttcatat	7	6	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107691475	C	C	107691475	1	2	154	0	1	0	0	0	0	0	0	0	10799	1856	64	5		5	NTNG1	1	107691475	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	15717916	107691475	141559146	22	131699											
FAM72D	728833	broad.mit.edu	37	chr1	143912270	143912270	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatggacacgcacctgtccTtgaaactacaaatgttggtg	11	9	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143912270	A	A	143912270	3	1	154	1	0	0	0	0	1	0	0	0	5667	1609	56	5	439	5	FAM72D	1	143912270	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	36220795	143912270	105338351	23	131700											
RPRD2	23248	broad.mit.edu	37	chr1	150443311	150443311	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactaccttccaactctttGgggtttacagctacccacaa	5	13	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150443311	A	A	150443311	2	1	154	1	0	0	0	0	0	0	0	1	13728	1339	47	4		4	RPRD2	1	150443311	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	6531041	150443311	98807310	24	131701											
CTSK	1513	broad.mit.edu	37	chr1	150778146	150778146	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaaaaaaaaaggaaaaGaaaaagaaaaaccagaaaca	5	3	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150778146	A	A	150778146	1	1	154	0	1	0	0	0	0	0	0	0	4071	957	33	4		4	CTSK	1	150778146	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	334835	150778146	98472475	25	131702											
FLG2	388698	broad.mit.edu	37	chr1	152325389	152325389	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgtccagtggtatctcCtatctgtccatgagtagttc	10	9	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152325389	G	G	152325389	3	3	154	1	0	0	0	0	1	0	0	0	5980	690	24	4	2306	4	FLG2	1	152325389	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1547243	152325389	96925232	26	131703											
ROBLD3	28956	broad.mit.edu	37	chr1	156024928	156024928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgtgctgggtgcttaggGcatgttccgggacacgctca	16	10	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156024928	T	T	156024928	1	4	154	0	1	0	0	0	0	0	0	0	13623	1218	42	3		3	ROBLD3	1	156024928	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3699539	156024928	93225693	27	131704											
ARHGEF11	9826	broad.mit.edu	37	chr1	156909259	156909259	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtacccagggggagtatagGgaaggaagcagctgttcgga	18	6	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156909259	A	A	156909259	1	1	154	0	1	0	0	0	0	0	0	0	898	1247	43	4		4	ARHGEF11	1	156909259	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	884331	156909259	92341362	28	131705											
FCRL5	83416	broad.mit.edu	37	chr1	157490734	157490734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcctttctgatcaagcaCtgtgagggttatcagagggt	13	7	3	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157490734	A	A	157490734	1	1	154	0	1	0	0	0	0	0	0	0	5855	580	20	3		3	FCRL5	1	157490734	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	581475	157490734	91759887	29	131706											
SPTA1	6708	broad.mit.edu	37	chr1	158605859	158605859	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatacatgttccattacccCacaatctctccccatttagc	3	16	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158605859	A	A	158605859	1	1	154	0	1	0	0	0	0	0	0	0	15234	609	21	2		2	SPTA1	1	158605859	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1115125	158605859	90644762	30	131707											
SLAMF9	89886	broad.mit.edu	37	chr1	159921434	159921434	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaccaagctcaggactgGggttcccaaggagcagtcag	13	10	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159921434	T	T	159921434	1	4	154	0	1	0	0	0	0	0	0	0	14484	1247	43	2		2	SLAMF9	1	159921434	3'UTR	SNP	G	TCGA-50-5066-01A-01D-1625-08	1315575	159921434	89329187	31	131708											
PAPPA2	60676	broad.mit.edu	37	chr1	176564456	176564456	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctgagcgtccaccaggtCcacaattccaccctgcgaca	8	17	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176564456	A	A	176564456	2	1	154	1	0	0	0	0	0	0	0	1	11527	842	30	3		3	PAPPA2	1	176564456	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	16643022	176564456	72686165	32	131709											
ABL2	27	broad.mit.edu	37	chr1	179112177	179112177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaactgtcccaaggacCatacctctgcccagaagcac	9	14	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179112177	A	A	179112177	1	1	154	0	1	0	0	0	0	0	0	0	93	594	21	2		2	ABL2	1	179112177	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	2547721	179112177	70138444	33	131710											
KIAA1614	57710	broad.mit.edu	37	chr1	180887047	180887047	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaggactccggccagaAcaggtaagagctcagagccc	12	13	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180887047	G	G	180887047	3	3	154	1	0	0	0	0	1	0	0	0	8318	43	2	5	1068	5	KIAA1614	1	180887047	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	1774870	180887047	68363574	34	131711											
KCNT2	343450	broad.mit.edu	37	chr1	196394954	196394954	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcactcaaaactgtaagCtgcaagatgaaaggcaggga	11	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196394954	A	A	196394954	1	1	154	0	1	0	0	0	0	0	0	0	8162	812	28	3		3	KCNT2	1	196394954	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	15507907	196394954	52855667	35	131712											
NEK7	140609	broad.mit.edu	37	chr1	198166966	198166966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatgctcgtggtgcttGtgcatctttttgtgagcttt	11	8	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198166966	T	T	198166966	1	4	154	0	1	0	0	0	0	0	0	0	10424	1392	48	3		3	NEK7	1	198166966	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1772012	198166966	51083655	36	131713											
PTPRC	5788	broad.mit.edu	37	chr1	198687238	198687238	+	Frame_Shift_Del	DEL	G	-	-													gatagctccaagccaggtctGgaacatgactgtctccatga							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	198687238	-	-	198687238	7	5	154	1	0	1	0	1	0	0	0	0	12905	1357	47	0	1521	0	PTPRC	1	198687238	Frame_Shift_Del	DEL	G	TCGA-50-5066-01A-01D-1625-08	520272	198687238	50563383	37	131714											
PPFIA4	8497	broad.mit.edu	37	chr1	203024683	203024683	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcgtggttccatccccacCtctctgacggccctgtccct	8	18	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203024683	A	A	203024683	2	1	154	1	0	0	0	0	0	0	0	1	12408	668	24	2		2	PPFIA4	1	203024683	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	4337445	203024683	46225938	38	131715											
LAX1	54900	broad.mit.edu	37	chr1	203741097	203741097	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acccaaggctggaaattccaGacaccacgcaaacccgcttc	7	16	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203741097	A	A	203741097	1	1	154	0	1	0	0	0	0	0	0	0	8720	957	33	4		4	LAX1	1	203741097	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	716414	203741097	45509524	39	131716											
REN	5972	broad.mit.edu	37	chr1	204136993	204136993	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaggctgggaaacagtggCtcatgcctgtaatcctagtg	12	8	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204136993	T	T	204136993	1	4	154	0	1	0	0	0	0	0	0	0	13332	812	28	4		4	REN	1	204136993	5'Flank	SNP	C	TCGA-50-5066-01A-01D-1625-08	395896	204136993	45113628	40	131717											
CNTN2	6900	broad.mit.edu	37	chr1	205033609	205033609	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacagcagcaggtaccaccCacaccccaccctgcacagtt	6	19	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205033609	A	A	205033609	1	1	154	0	1	0	0	0	0	0	0	0	3673	609	21	2		2	CNTN2	1	205033609	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	896616	205033609	44217012	41	131718											
CR2	1380	broad.mit.edu	37	chr1	207647191	207647191	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaagaacttccagctgGttcacgtgtggagctagtta	10	9	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207647191	C	C	207647191	3	2	154	1	0	0	0	0	1	0	0	0	3874	1261	44	4	2247	4	CR2	1	207647191	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2613582	207647191	41603430	42	131719											
C1orf95	375057	broad.mit.edu	37	chr1	226784561	226784561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaccgacctcccggacagGcatgtgtgctgcgtcttctg	12	15	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226784561	T	T	226784561	3	4	154	1	0	0	0	0	1	0	0	0	2094	1194	42	3	267	3	C1orf95	1	226784561	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	19137370	226784561	22466060	43	131720											
HIST3H2BB	128312	broad.mit.edu	37	chr1	228645844	228645844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccatcatgccagacccgtCcaaatcggctcctgcgccca	8	18	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228645844	A	A	228645844	3	1	154	1	0	0	0	0	1	0	0	0	7250	855	30	3	16	3	HIST3H2BB	1	228645844	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1861283	228645844	20604777	44	131721											
RAB4A	5867	broad.mit.edu	37	chr1	229422169	229422169	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atactaaatttgatgatcgtGatctaagaagaaattcacag	7	5	2	5			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229422169	C	C	229422169	1	2	154	0	1	0	0	0	0	0	0	0	13054	1305	45	4		4	RAB4A	1	229422169	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	776325	229422169	19828452	45	131722											
TAF5L	27097	broad.mit.edu	37	chr1	229737881	229737881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaagatatgtcgtgtttggTaaggacattctaaggaaatt	10	4	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229737881	C	C	229737881	1	2	154	0	1	0	0	0	0	0	0	0	15648	1653	57	5		5	TAF5L	1	229737881	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	315712	229737881	19512740	46	131723											
URB2	9816	broad.mit.edu	37	chr1	229773858	229773858	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatactgttggagttgccAgctctcgcgggacatgatca	12	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229773858	C	C	229773858	2	2	154	1	0	0	0	0	0	0	0	1	17151	175	7	5		5	URB2	1	229773858	Silent	SNP	A	TCGA-50-5066-01A-01D-1625-08	35977	229773858	19476763	47	131724											
GALNT2	2590	broad.mit.edu	37	chr1	230398372	230398372	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatacaaaaatttctattAtgcagcagtgccttctgcta	6	8	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230398372	T	T	230398372	3	4	154	1	0	0	0	0	1	0	0	0	6275	449	16	5	1236	5	GALNT2	1	230398372	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	624514	230398372	18852249	48	131725											
PGBD5	79605	broad.mit.edu	37	chr1	230472911	230472911	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgctgggccccgtgaaaaTgatgtagttcttgcctgccg	13	10	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230472911	A	A	230472911	3	1	154	1	0	0	0	0	1	0	0	0	11879	1464	51	5	572	5	PGBD5	1	230472911	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	74539	230472911	18777710	49	131726											
SIPA1L2	57568	broad.mit.edu	37	chr1	232534931	232534931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttccgcagctgagctGtcgcggtctgggactcctcc	12	13	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232534931	T	T	232534931	3	4	154	1	0	0	0	0	1	0	0	0	14443	1377	48	3	61	3	SIPA1L2	1	232534931	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2062020	232534931	16715690	50	131727											
NID1	4811	broad.mit.edu	37	chr1	236189162	236189162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggttttaaaaatgcatgaGcacctgtgcccagcatgagc	12	9	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236189162	T	T	236189162	1	4	154	0	1	0	0	0	0	0	0	0	10509	986	34	3		3	NID1	1	236189162	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3654231	236189162	13061459	51	131728											
ACTN2	88	broad.mit.edu	37	chr1	236889367	236889367	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattctcagtggaatctgtGggtagcatggggaacagtgt	15	5	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236889367	T	T	236889367	1	4	154	0	1	0	0	0	0	0	0	0	205	1363	47	2		2	ACTN2	1	236889367	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	700205	236889367	12361254	52	131729											
RYR2	6262	broad.mit.edu	37	chr1	237519262	237519262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttggctttttctttccaCagcaagttgatgtggaaaaa	8	6	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237519262	A	A	237519262	1	1	154	0	1	0	0	0	0	0	0	0	13880	493	17	3		3	RYR2	1	237519262	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	629895	237519262	11731359	53	131730											
WDR64	128025	broad.mit.edu	37	chr1	241958594	241958594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcctatatacagtgtgaGttggagtttctaggagtaga	12	5	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241958594	T	T	241958594	1	4	154	0	1	0	0	0	0	0	0	0	17442	1044	36	3		3	WDR64	1	241958594	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	4439332	241958594	7292027	54	131731											
TRIM58	25893	broad.mit.edu	37	chr1	248023900	248023900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgagggcatctgtaacagCtgaaatgttcccaaacaggt	10	8	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248023900	A	A	248023900	1	1	154	0	1	0	0	0	0	0	0	0	16656	812	28	3		3	TRIM58	1	248023900	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	6065306	248023900	1226721	55	131732											
OR2L8	391190	broad.mit.edu	37	chr1	248112175	248112175	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctccatggaaaattacaatCaaacatcaactgatttcatc	4	10	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248112175	A	A	248112175	3	1	154	1	0	0	0	0	1	0	0	0	11103	827	29	3	18	3	OR2L8	1	248112175	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	88275	248112175	1138446	56	131733											
OR2L8	391190	broad.mit.edu	37	chr1	248112611	248112611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagggtcttggatcatagGctcgatcaatgcttgtgctc	11	9	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112611	T	T	248112611	3	4	154	1	0	0	0	0	1	0	0	0	11103	1203	42	3	454	3	OR2L8	1	248112611	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	436	248112611	1138010	57	131734											
OR2L13	284521	broad.mit.edu	37	chr1	248167049	248167049	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgagtgccaccatctttcTcgtgtttcccttcattgcta	6	12	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248167049	C	C	248167049	1	2	154	0	1	0	0	0	0	0	0	0	11100	1566	54	5		5	OR2L13	1	248167049	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	54438	248167049	1083572	58	131735											
OR2L13	284521	broad.mit.edu	37	chr1	248167296	248167296	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaatgctcaaccccatcatCtatagcctgaggaacaagga	7	13	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248167296	A	A	248167296	1	1	154	0	1	0	0	0	0	0	0	0	11100	928	32	3		3	OR2L13	1	248167296	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	247	248167296	1083325	59	131736											
OR2L13	284521	broad.mit.edu	37	chr1	248247364	248247364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgcaccagcacgggggcCtcgcagaagaagtgatcgat	13	11	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247364	A	A	248247364	1	1	154	0	1	0	0	0	0	0	0	0	11100	696	24	2		2	OR2L13	1	248247364	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	80068	248247364	1003257	60	131737											
OR2M2	391194	broad.mit.edu	37	chr1	248343380	248343380	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgttcctcttctttctggtCctgggcatctttttagtggc	9	11	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343380	A	A	248343380	2	1	154	1	0	0	0	0	0	0	0	1	11104	842	30	3		3	OR2M2	1	248343380	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	96016	248343380	907241	61	131738											
OR2T33	391195	broad.mit.edu	37	chr1	248436583	248436583	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacgcaccagcacgggggtCtcgcagaagaagtgatcgat	13	10	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248436583	A	A	248436583	3	1	154	1	0	0	0	0	1	0	0	0	11118	912	32	3	431	3	OR2T33	1	248436583	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	93203	248436583	814038	62	131739											
OR2T1	26696	broad.mit.edu	37	chr1	248569491	248569491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagacttcactttcatgGggctgttcaacagaaaggaa	9	9	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248569491	T	T	248569491	3	4	154	1	0	0	0	0	1	0	0	0	11110	1232	43	2	198	2	OR2T1	1	248569491	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	132908	248569491	681130	63	131740											
OR2G6	391211	broad.mit.edu	37	chr1	248685220	248685220	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaataagaaagacaaaacCatgagctacggtggctgtgt	11	6	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248685220	A	A	248685220	2	1	154	1	0	0	0	0	0	0	0	1	11094	581	21	2		2	OR2G6	1	248685220	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	115729	248685220	565401	64	131741											
ADI1	55256	broad.mit.edu	37	chr2	3502845	3502845	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acaaacagccgcatggccttCgtgtagttctggaaaacaga	10	10	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3502845	G	G	3502845	2	3	154	1	0	0	0	0	0	0	0	1	315	871	31	4		4	ADI1	2	3502845	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08		3502845	239696528	65	131742											
KIDINS220	57498	broad.mit.edu	37	chr2	8890429	8890429	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggagcggggggtacgccagtCctccaatactgatctgctct	13	12	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8890429	T	T	8890429	3	4	154	1	0	0	0	0	1	0	0	0	8341	855	30	4	2116	4	KIDINS220	2	8890429	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5387584	8890429	234308944	66	131743											
NTSR2	23620	broad.mit.edu	37	chr2	11800123	11800123	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagaccccaggcctagcccAgttgggccccctccctgtgt	12	17	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11800123	C	C	11800123	1	2	154	0	1	0	0	0	0	0	0	0	10806	203	7	5		5	NTSR2	2	11800123	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	2909694	11800123	231399250	67	131744											
APOB	338	broad.mit.edu	37	chr2	21239524	21239524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagtctgcttcgcacctGgacgagtgtataagagaatc	10	11	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21239524	T	T	21239524	1	4	154	0	1	0	0	0	0	0	0	0	787	1363	47	2		2	APOB	2	21239524	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	9439401	21239524	221959849	68	131745											
NCOA1	8648	broad.mit.edu	37	chr2	24914230	24914230	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttagatctgaagaggtcAgtctgtcttttaatctgagt	10	5	5	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24914230	T	T	24914230	1	4	154	0	1	0	0	0	0	0	0	0	10323	203	7	5		5	NCOA1	2	24914230	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	3674706	24914230	218285143	69	131746											
NCOA1	8648	broad.mit.edu	37	chr2	24965175	24965175	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaggaaagacactgacgtGggagtctggagacccaggat	15	7	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24965175	C	C	24965175	1	2	154	0	1	0	0	0	0	0	0	0	10323	1363	47	4		4	NCOA1	2	24965175	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	50945	24965175	218234198	70	131747											
IFT172	26160	broad.mit.edu	37	chr2	27707890	27707890	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctctatcctcaccaatcTtctccaatcttgtagacata	3	13	5	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27707890	G	G	27707890	3	3	154	1	0	0	0	0	1	0	0	0	7627	1606	56	5	5142	5	IFT172	2	27707890	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	2742715	27707890	215491483	71	131748											
FAM179A	165186	broad.mit.edu	37	chr2	29247185	29247185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtctctgagggctatgGtggagaatgtgacccttgcc	14	10	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29247185	T	T	29247185	3	4	154	1	0	0	0	0	1	0	0	0	5550	1261	44	3	1844	3	FAM179A	2	29247185	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1539295	29247185	213952188	72	131749											
CRIM1	51232	broad.mit.edu	37	chr2	36749417	36749417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgtatcctgtgaaagaCctgtcttgagaaaaggccag	10	9	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36749417	A	A	36749417	3	1	154	1	0	0	0	0	1	0	0	0	3905	507	18	3	2439	3	CRIM1	2	36749417	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	7502232	36749417	206449956	73	131750											
DHX57	90957	broad.mit.edu	37	chr2	39050300	39050300	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggagttaatgctcctaaGtctcgtaatcgtatttttga	8	7	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39050300	A	A	39050300	2	1	154	1	0	0	0	0	0	0	0	1	4553	1020	36	4		4	DHX57	2	39050300	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	2300883	39050300	204149073	74	131751											
PLEKHH2	130271	broad.mit.edu	37	chr2	43927886	43927886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaacctccatctcccgGgttcaagtgattctcctgcc	7	16	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43927886	T	T	43927886	1	4	154	0	1	0	0	0	0	0	0	0	12172	1247	43	2		2	PLEKHH2	2	43927886	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	4877586	43927886	199271487	75	131752											
SPRED2	200734	broad.mit.edu	37	chr2	65540932	65540932	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcagtggccccggcggttCtcctcgtggttgaacatgtc	14	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65540932	T	T	65540932	2	4	154	1	0	0	0	0	0	0	0	1	15211	912	32	4		4	SPRED2	2	65540932	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	21613046	65540932	177658441	76	131753											
ARHGAP25	9938	broad.mit.edu	37	chr2	69043458	69043458	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagctctccatccttcCtcgtgacaactatagtctcc	6	15	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69043458	T	T	69043458	3	4	154	1	0	0	0	0	1	0	0	0	876	681	24	4	911	4	ARHGAP25	2	69043458	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3502526	69043458	174155915	77	131754											
AAK1	22848	broad.mit.edu	37	chr2	69759299	69759299	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggatgttttcaacctgaAaaacattccccaaccaccca	5	13	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69759299	G	G	69759299	1	3	154	0	1	0	0	0	0	0	0	0	16	29	1	5		5	AAK1	2	69759299	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	715841	69759299	173440074	78	131755											
ALMS1	7840	broad.mit.edu	37	chr2	73676241	73676241	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcctctgcgtcctcttcaCttggagaaaagcccagtgct	8	14	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73676241	G	G	73676241	3	3	154	1	0	0	0	0	1	0	0	0	535	565	20	4	2614	4	ALMS1	2	73676241	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3916942	73676241	169523132	79	131756											
HK2	3099	broad.mit.edu	37	chr2	75094920	75094920	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggcacccaggtatgaccCttctctcagggcagcccctg	11	15	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75094920	T	T	75094920	1	4	154	0	1	0	0	0	0	0	0	0	7258	696	24	4		4	HK2	2	75094920	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1418679	75094920	168104453	80	131757											
HK2	3099	broad.mit.edu	37	chr2	75109223	75109223	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgcccagggcccctccctCagtgtcctaacttctccctg	7	20	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75109223	T	T	75109223	1	4	154	0	1	0	0	0	0	0	0	0	7258	841	29	4		4	HK2	2	75109223	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	14303	75109223	168090150	81	131758											
TACR1	6869	broad.mit.edu	37	chr2	75278382	75278382	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggttgggatcctcacctgtCattgaggcagcagtagatga	14	8	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75278382	T	T	75278382	3	4	154	1	0	0	0	0	1	0	0	0	15624	826	29	4	307	4	TACR1	2	75278382	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	169159	75278382	167920991	82	131759											
SFTPB	6439	broad.mit.edu	37	chr2	85894955	85894956	+	Intron	INS	-	A	A													tttggggccagagcaaccttINSaatcaggatccaggctacac							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85894956	A	A	85894955	6	5	154	0	1	1	1	0	0	0	0	0	14304	1769	61	0		0	SFTPB	2	85894955	Intron	INS	-	TCGA-50-5066-01A-01D-1625-08	10616573	85894955	157304418	83	131760											
ATOH8	84913	broad.mit.edu	37	chr2	85991319	85991319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaaggtatgcaccagctGggtgggcggtagcttctggg	18	9	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85991319	T	T	85991319	1	4	154	0	1	0	0	0	0	0	0	0	1118	1363	47	2		2	ATOH8	2	85991319	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	96364	85991319	157208054	84	131761											
RANBP2	5903	broad.mit.edu	37	chr2	109378660	109378660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccacaaaggtaacaaaGgaataatttatacatttata	4	7	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109378660	T	T	109378660	1	4	154	0	1	0	0	0	0	0	0	0	13136	1015	35	2		2	RANBP2	2	109378660	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	23387341	109378660	133820713	85	131762											
IL1A	3552	broad.mit.edu	37	chr2	113532837	113532837	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatggttttgggtatctcaGgcatctcctatgaagaaaag	11	6	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113532837	C	C	113532837	3	2	154	1	0	0	0	0	1	0	0	0	7720	1000	35	4	196	4	IL1A	2	113532837	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	4154177	113532837	129666536	86	131763											
DDX18	8886	broad.mit.edu	37	chr2	118582347	118582347	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtttttatgtaattgttgGaaggatcattcagaaagcaa	10	3	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118582347	T	T	118582347	1	4	154	0	1	0	0	0	0	0	0	0	4378	1189	41	3		3	DDX18	2	118582347	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	5049510	118582347	124617026	87	131764											
UGGT1	56886	broad.mit.edu	37	chr2	128918638	128918638	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtagcctgaggacgccAgagggttccttaccagcttg	14	10	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128918638	T	T	128918638	1	4	154	0	1	0	0	0	0	0	0	0	17067	203	7	5		5	UGGT1	2	128918638	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	10336291	128918638	114280735	88	131765											
TUBA3D	113457	broad.mit.edu	37	chr2	132238049	132238049	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccagaccaacctagtgccGtacccccgcatccacttccc	5	20	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132238049	A	A	132238049	2	1	154	1	0	0	0	0	0	0	0	1	16873	1132	40	4		4	TUBA3D	2	132238049	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	3319411	132238049	110961324	89	131766											
NCKAP5	344148	broad.mit.edu	37	chr2	133541071	133541071	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgactcatttacccctaAgaaggaaggcttggggggtg	15	7	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133541071	G	G	133541071	2	3	154	1	0	0	0	0	0	0	0	1	10318	69	3	5		5	NCKAP5	2	133541071	Silent	SNP	A	TCGA-50-5066-01A-01D-1625-08	1303022	133541071	109658302	90	131767											
NCKAP5	344148	broad.mit.edu	37	chr2	133636389	133636389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatcccaactagtccagCcttggatcaggagcctctcc	10	14	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133636389	A	A	133636389	1	1	154	0	1	0	0	0	0	0	0	0	10318	754	26	3		3	NCKAP5	2	133636389	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	95318	133636389	109562984	91	131768											
LRP1B	53353	broad.mit.edu	37	chr2	141232928	141232928	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggaaagaaaatcaatactGattttgtttacagattctct	6	5	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141232928	T	T	141232928	1	4	154	0	1	0	0	0	0	0	0	0	9042	1305	45	3		3	LRP1B	2	141232928	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	7596539	141232928	101966445	92	131769											
ORC4L	5000	broad.mit.edu	37	chr2	148733441	148733441	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagctttacagggtaaaatAtcttgagattaatgaaaata	7	4	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148733441	G	G	148733441	1	3	154	0	1	0	0	0	0	0	0	0	11358	464	16	5		5	ORC4L	2	148733441	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	7500513	148733441	94465932	93	131770											
STAM2	10254	broad.mit.edu	37	chr2	153000426	153000426	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatcatataaagctctcaCtttccgtgcaaccttattat	3	10	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153000426	T	T	153000426	3	4	154	1	0	0	0	0	1	0	0	0	15367	565	20	4	990	4	STAM2	2	153000426	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	4266985	153000426	90198947	94	131771											
SCN2A	6326	broad.mit.edu	37	chr2	166164294	166164294	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaacttcatggtggtgaaGgcatggtagtgcataaaagt	12	4	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166164294	A	A	166164294	1	1	154	0	1	0	0	0	0	0	0	0	14029	1015	35	4		4	SCN2A	2	166164294	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	13163868	166164294	77035079	95	131772											
SCN9A	6335	broad.mit.edu	37	chr2	167141201	167141201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccttctgctctcattgtctCcaaaaatgctgtgctcatca	5	14	5	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167141201	A	A	167141201	3	1	154	1	0	0	0	0	1	0	0	0	14038	855	30	3	4261	3	SCN9A	2	167141201	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	976907	167141201	76058172	96	131773											
XIRP2	129446	broad.mit.edu	37	chr2	168100378	168100378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcaaagagtcagaagagGtcatcattgaaaaggaaaaa	9	4	4	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168100378	T	T	168100378	3	4	154	1	0	0	0	0	1	0	0	0	17557	1261	44	3	2506	3	XIRP2	2	168100378	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	959177	168100378	75098995	97	131774											
SLC25A12	8604	broad.mit.edu	37	chr2	172712358	172712358	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttaccaaatgtcacctctCcatttccactcttgtcaaac	2	16	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172712358	G	G	172712358	3	3	154	1	0	0	0	0	1	0	0	0	14588	855	30	4	1785	4	SLC25A12	2	172712358	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	4611980	172712358	70487015	98	131775											
CHRNA1	1134	broad.mit.edu	37	chr2	175618340	175618340	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgctgcatgacgaagtgGtaggtgatgtccaggtaggg	18	6	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175618340	T	T	175618340	4	4	154	1	0	0	0	0	0	1	0	0	3412	1256	44	3	720	3	CHRNA1	2	175618340	Nonsense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2905982	175618340	67581033	99	131776											
KIAA1715	80856	broad.mit.edu	37	chr2	176794757	176794757	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatagaatcagctccaggaaCtgtggagttggtttcaatca	10	7	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176794757	G	G	176794757	3	3	154	1	0	0	0	0	1	0	0	0	8324	565	20	4	65	4	KIAA1715	2	176794757	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1176417	176794757	66404616	100	131777											
PRKRA	8575	broad.mit.edu	37	chr2	179315752	179315752	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcgcggtgcctgctctgGgacatggcgagaagggacgg	19	10	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179315752	T	T	179315752	2	4	154	1	0	0	0	0	0	0	0	1	12630	1219	43	2		2	PRKRA	2	179315752	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	2520995	179315752	63883621	101	131778											
TTN	7273	broad.mit.edu	37	chr2	179640063	179640063	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaaagacaggtccatcaaAggaaagacatgcaaattacc	7	9	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179640063	T	T	179640063	1	4	154	0	1	0	0	0	0	0	0	0	16861	87	3	5		5	TTN	2	179640063	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	324311	179640063	63559310	102	131779											
SESTD1	91404	broad.mit.edu	37	chr2	180014089	180014089	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcaagttcatctaataaTgatgtagattcctttgtaaa	6	5	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180014089	C	C	180014089	2	2	154	1	0	0	0	0	0	0	0	1	14240	1451	51	5		5	SESTD1	2	180014089	Silent	SNP	T	TCGA-50-5066-01A-01D-1625-08	374026	180014089	63185284	103	131780											
TMEFF2	23671	broad.mit.edu	37	chr2	192818511	192818511	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaccgggaacaacgtataGaacactgtagtccttttttt	9	8	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192818511	C	C	192818511	3	2	154	1	0	0	0	0	1	0	0	0	16137	933	33	4	210	4	TMEFF2	2	192818511	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	12804422	192818511	50380862	104	131781											
PLCL1	5334	broad.mit.edu	37	chr2	198948482	198948482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttcaaattattttacagGatccttcaaaccaaaaatgt	3	7	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198948482	T	T	198948482	3	4	154	1	0	0	0	0	1	0	0	0	12134	1188	41	3	247	3	PLCL1	2	198948482	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	6129971	198948482	44250891	105	131782											
SATB2	23314	broad.mit.edu	37	chr2	200213787	200213787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatttggctgtgaggagaCtgttcgttggttttccccag	13	7	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200213787	A	A	200213787	3	1	154	1	0	0	0	0	1	0	0	0	13966	564	20	3	1411	3	SATB2	2	200213787	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1265305	200213787	42985586	106	131783											
SATB2	23314	broad.mit.edu	37	chr2	200246581	200246581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acataataaacacatatctgCtatttattaaaccttcccat	1	10	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200246581	A	A	200246581	1	1	154	0	1	0	0	0	0	0	0	0	13966	812	28	3		3	SATB2	2	200246581	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	32794	200246581	42952792	107	131784											
PTH2R	5746	broad.mit.edu	37	chr2	209357910	209357910	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattattgctgtcattgaaaTcaaggcaaacatctttgtaa	7	6	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209357910	G	G	209357910	1	3	154	0	1	0	0	0	0	0	0	0	12866	1450	50	5		5	PTH2R	2	209357910	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	9111329	209357910	33841463	108	131785											
SMARCAL1	50485	broad.mit.edu	37	chr2	217311909	217311909	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatctcttccctcccagccCacccatttctcaccctgatt	2	19	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217311909	G	G	217311909	1	3	154	0	1	0	0	0	0	0	0	0	14887	609	21	4		4	SMARCAL1	2	217311909	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	7953999	217311909	25887464	109	131786											
TNP1	7141	broad.mit.edu	37	chr2	217724465	217724466	+	Intron	DNP	CC	AA	AA													gagacacgaattagaacattCccatcaagactcttgttgct							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	217724466	AA	AA	217724465	1	1	154	0	1	0	0	0	0	0	0	0	16456	870	30	3		3	TNP1	2	217724465	Intron	DNP	CC	TCGA-50-5066-01A-01D-1625-08	412556	217724465	25474908	110	131787											
SLC4A3	6508	broad.mit.edu	37	chr2	220502499	220502499	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcatagccttcttcctgcGcaagttcaggaacagccgct	8	14	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220502499	C	C	220502499	3	2	154	1	0	0	0	0	1	0	0	0	14769	1087	38	4	2875	4	SLC4A3	2	220502499	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2778034	220502499	22696874	111	131788											
DOCK10	55619	broad.mit.edu	37	chr2	225669891	225669891	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaaggttttctttttccTtttttcaaaaaaattaaaga	4	5	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225669891	A	A	225669891	1	1	154	0	1	0	0	0	0	0	0	0	4725	1624	56	5		5	DOCK10	2	225669891	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	5167392	225669891	17529482	112	131789											
ALPI	248	broad.mit.edu	37	chr2	233321897	233321897	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccaccacacgggtgcaGcacgcctcgccagccggcac	12	18	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233321897	C	C	233321897	3	2	154	1	0	0	0	0	1	0	0	0	543	962	34	4	531	4	ALPI	2	233321897	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	7652006	233321897	9877476	113	131790											
SH3BP4	23677	broad.mit.edu	37	chr2	235951280	235951280	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatcaagccttccgggcaaAggaggtttctcaagaagaac	10	11	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235951280	T	T	235951280	3	4	154	1	0	0	0	0	1	0	0	0	14359	63	3	5	1873	5	SH3BP4	2	235951280	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	2629383	235951280	7248093	114	131791											
KIF1A	547	broad.mit.edu	37	chr2	241724517	241724517	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgttggtggccgccacggtCctgaggagcagaaagccacg	15	11	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241724517	G	G	241724517	3	3	154	1	0	0	0	0	1	0	0	0	8353	869	30	4	4627	4	KIF1A	2	241724517	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5773237	241724517	1474856	115	131792											
C2orf85	285093	broad.mit.edu	37	chr2	242814287	242814287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgctgtccacccctggcgacGaccttggcaagggtggcgtt	14	14	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242814287	T	T	242814287	3	4	154	1	0	0	0	0	1	0	0	0	2222	1058	37	3	586	3	C2orf85	2	242814287	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1089770	242814287	385086	116	131793											
CHL1	10752	broad.mit.edu	37	chr3	440565	440565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaacatgtccttcaaattGcattccttctggggtcatta	6	9	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	440565	T	T	440565	1	4	154	0	1	0	0	0	0	0	0	0	3380	1334	46	3		3	CHL1	3	440565	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08		440565	197581865	117	131794											
CNTN4	152330	broad.mit.edu	37	chr3	2787250	2787250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacactggtatggatttccGctacagtgttgttgaaggga	13	6	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2787250	T	T	2787250	3	4	154	1	0	0	0	0	1	0	0	0	3675	1087	38	3	237	3	CNTN4	3	2787250	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2346685	2787250	195235180	118	131795											
SRGAP3	9901	broad.mit.edu	37	chr3	9069842	9069842	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaaaataaacaggcagcaGagcaggagaaaaagaaaaga	10	5	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9069842	A	A	9069842	1	1	154	0	1	0	0	0	0	0	0	0	15265	957	33	4		4	SRGAP3	3	9069842	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	6282592	9069842	188952588	119	131796											
SYN2	6854	broad.mit.edu	37	chr3	12183494	12183494	+	Silent	SNP	C	T	T													cggaatggcacaaaggttgtCcggtaagggtctttctgtcc							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12183494	T	T	12183494	2	4	154	1	0	0	0	0	0	0	0	1	15560	842	30	4		4	SYN2	3	12183494	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	3113652	12183494	185838936	120	131797	570	2									
SYN2	6854	broad.mit.edu	37	chr3	12183496	12183496	+	Missense_Mutation	SNP	G	C	C													gaatggcacaaaggttgtccGgtaagggtctttctgtcctc							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12183496	C	C	12183496	3	2	154	1	0	0	0	0	1	0	0	0	15560	1130	39	4	538	4	SYN2	3	12183496	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2	12183496	185838934	121	131798	570	2									
NUP210	23225	broad.mit.edu	37	chr3	13381346	13381346	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagtctccaatagcacgCctgttacctgagagatgatg	10	12	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13381346	A	A	13381346	1	1	154	0	1	0	0	0	0	0	0	0	10855	754	26	3		3	NUP210	3	13381346	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1197850	13381346	184641084	122	131799											
KCNH8	131096	broad.mit.edu	37	chr3	19295179	19295179	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgccaatgcccaggtggCtaagggtttccccatagtct	10	13	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19295179	T	T	19295179	3	4	154	1	0	0	0	0	1	0	0	0	8108	797	28	4	116	4	KCNH8	3	19295179	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5913833	19295179	178727251	123	131800											
CCR4	1233	broad.mit.edu	37	chr3	32995942	32995942	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttactctgctgacacccCcagctcatcttacacgcagt	5	15	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32995942	T	T	32995942	3	4	154	1	0	0	0	0	1	0	0	0	2973	623	22	4	1030	4	CCR4	3	32995942	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	13700763	32995942	165026488	124	131801											
ARPP21	10777	broad.mit.edu	37	chr3	35748527	35748527	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagaatcccagaagcggTttatcttgaagcgagataac	11	7	1	5			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35748527	A	A	35748527	3	1	154	1	0	0	0	0	1	0	0	0	982	1725	60	5	791	5	ARPP21	3	35748527	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	2752585	35748527	162273903	125	131802											
DCLK3	85443	broad.mit.edu	37	chr3	36779123	36779123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcaatgatgcccatgggcCgtggcttccgaccgctgggc	15	14	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779123	A	A	36779123	3	1	154	1	0	0	0	0	1	0	0	0	4326	652	23	1	934	1	DCLK3	3	36779123	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1030596	36779123	161243307	126	131803											
ENTPD3	956	broad.mit.edu	37	chr3	40468909	40468909	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcacagcggcagccttgctGtgtctggcatttcttgcata	10	11	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40468909	A	A	40468909	2	1	154	1	0	0	0	0	0	0	0	1	5182	1364	48	4		4	ENTPD3	3	40468909	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	3689786	40468909	157553521	127	131804											
LYZL4	131375	broad.mit.edu	37	chr3	42445487	42445487	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagccaagattcagattagaGatcatgagtgaaagtcgtta	10	5	2	5			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42445487	T	T	42445487	1	4	154	0	1	0	0	0	0	0	0	0	9221	957	33	3		3	LYZL4	3	42445487	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1976578	42445487	155576943	128	131805											
TGM4	7047	broad.mit.edu	37	chr3	44951735	44951735	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaatttcaccgtgattcTtaaaaggaagaccgctgccc	8	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44951735	G	G	44951735	3	3	154	1	0	0	0	0	1	0	0	0	15955	1609	56	5	1523	5	TGM4	3	44951735	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	2506248	44951735	153070695	129	131806											
RBM15B	29890	broad.mit.edu	37	chr3	51429993	51429993	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcaagttccagaacctggAcatggcccatagggctaagg	11	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51429993	T	T	51429993	3	4	154	1	0	0	0	0	1	0	0	0	13225	275	10	5	1165	5	RBM15B	3	51429993	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	6478258	51429993	146592437	130	131807											
POC1A	25886	broad.mit.edu	37	chr3	52185109	52185109	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaatgcctttccagcgagGggtcctcctgagagagagcc	12	11	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52185109	A	A	52185109	3	1	154	1	0	0	0	0	1	0	0	0	12270	1232	43	4	1237	4	POC1A	3	52185109	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	755116	52185109	145837321	131	131808											
STAB1	23166	broad.mit.edu	37	chr3	52540712	52540712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtctctgccgcaggggcGcatcctgctgggacccgagg	17	13	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52540712	T	T	52540712	3	4	154	1	0	0	0	0	1	0	0	0	15355	1087	38	3	1905	3	STAB1	3	52540712	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	355603	52540712	145481718	132	131809											
CACNA2D3	55799	broad.mit.edu	37	chr3	54914873	54914873	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaatatttcttccgagggaAtgtaaccatcgaagaaggta	10	6	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54914873	T	T	54914873	3	4	154	1	0	0	0	0	1	0	0	0	2576	101	4	5	1977	5	CACNA2D3	3	54914873	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	2374161	54914873	143107557	133	131810											
ADAMTS9	56999	broad.mit.edu	37	chr3	64527519	64527519	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttggccaacttacagttaTagacattacggcaggttttt	9	7	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64527519	C	C	64527519	3	2	154	1	0	0	0	0	1	0	0	0	273	1406	49	5	643	5	ADAMTS9	3	64527519	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	9612646	64527519	133494911	134	131811											
SHQ1	55164	broad.mit.edu	37	chr3	72861978	72861978	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attttaataagcagtcatttCcacaaaatgttacacaaaca	3	8	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72861978	A	A	72861978	1	1	154	0	1	0	0	0	0	0	0	0	14405	870	30	3		3	SHQ1	3	72861978	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	8334459	72861978	125160452	135	131812											
EPHA6	285220	broad.mit.edu	37	chr3	96706660	96706660	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaacttggccatgtttcctGataccattccaagggttgat	9	9	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96706660	T	T	96706660	3	4	154	1	0	0	0	0	1	0	0	0	5213	1290	45	3	947	3	EPHA6	3	96706660	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	23844682	96706660	101315770	136	131813											
SENP7	57337	broad.mit.edu	37	chr3	101046458	101046458	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattacacccagtaacttgTgaccgtatggtggtaactgt	9	9	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101046458	G	G	101046458	1	3	154	0	1	0	0	0	0	0	0	0	14164	1711	59	5		5	SENP7	3	101046458	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	4339798	101046458	96975972	137	131814											
IFT57	55081	broad.mit.edu	37	chr3	107882488	107882489	+	Intron	DNP	CC	AA	AA													ttctcttgctcagtttttccCctaaaatgagcatgtactta							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	107882489	AA	AA	107882488	1	1	154	0	1	0	0	0	0	0	0	0	7632	638	22	2		2	IFT57	3	107882488	Intron	DNP	CC	TCGA-50-5066-01A-01D-1625-08	6836030	107882488	90139942	138	131815											
WDR52	55779	broad.mit.edu	37	chr3	113145173	113145173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatatggtttggctgtgtcCccacccaaatctcaacttga	8	11	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113145173	A	A	113145173	1	1	154	0	1	0	0	0	0	0	0	0	17431	638	22	2		2	WDR52	3	113145173	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5262685	113145173	84877257	139	131816											
WDR52	55779	broad.mit.edu	37	chr3	113145230	113145230	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctccacatgtcatgggagaGacctggtaggaggtaattga	13	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113145230	C	C	113145230	1	2	154	0	1	0	0	0	0	0	0	0	17431	957	33	4		4	WDR52	3	113145230	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	57	113145230	84877200	140	131817											
ACAD9	28976	broad.mit.edu	37	chr3	128627982	128627982	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataccccctatttcaatgccCtcctgccagatctccttgtg	5	16	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128627982	T	T	128627982	1	4	154	0	1	0	0	0	0	0	0	0	111	696	24	4		4	ACAD9	3	128627982	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	15482752	128627982	69394448	141	131818											
DNAJC13	23317	broad.mit.edu	37	chr3	132198072	132198072	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcatttatttcaatagtGcacagataaacttgaacgag	6	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132198072	A	A	132198072	3	1	154	1	0	0	0	0	1	0	0	0	4672	1333	46	4	2805	4	DNAJC13	3	132198072	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	3570090	132198072	65824358	142	131819											
UBA5	79876	broad.mit.edu	37	chr3	132394424	132394424	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgagaatgagtaagaacaCtttgatgctgtttgatttct	9	5	1	5			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132394424	G	G	132394424	1	3	154	0	1	0	0	0	0	0	0	0	16956	580	20	4		4	UBA5	3	132394424	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	196352	132394424	65628006	143	131820											
PRR23B	389151	broad.mit.edu	37	chr3	138739120	138739120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtcctccctgacagcgccCaggaaaacgtccacttccag	8	17	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138739120	A	A	138739120	2	1	154	1	0	0	0	0	0	0	0	1	12701	581	21	2		2	PRR23B	3	138739120	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	6344696	138739120	59283310	144	131821											
ZIC4	84107	broad.mit.edu	37	chr3	147108756	147108756	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacgcgccgccaccgccgcCgaggaggccacctgggactt	14	17	0	0	rs17509456	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147108756	T	T	147108756	2	4	154	1	0	0	0	0	0	0	0	1	17807	639	23	4		4	ZIC4	3	147108756	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	8369636	147108756	50913674	145	131822											
SMC4	10051	broad.mit.edu	37	chr3	160137168	160137168	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaagaacttcaaaaacTtacacaagaagaaacaaact	4	7	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160137168	A	A	160137168	3	1	154	1	0	0	0	0	1	0	0	0	14899	1609	56	5	1736	5	SMC4	3	160137168	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	13028412	160137168	37885262	146	131823											
SI	6476	broad.mit.edu	37	chr3	164700105	164700105	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tagagtaactgcattgacagGagtagttcctttcccccata	8	10	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164700105	C	C	164700105	3	2	154	1	0	0	0	0	1	0	0	0	14410	1174	41	4	150	4	SI	3	164700105	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	4562937	164700105	33322325	147	131824											
SI	6476	broad.mit.edu	37	chr3	164755823	164755823	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttttgcaccctaataattgGaagattaaaaacattcttaa	4	6	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164755823	A	A	164755823	1	1	154	0	1	0	0	0	0	0	0	0	14410	1189	41	4		4	SI	3	164755823	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	55718	164755823	33266607	148	131825											
ABCC5	10057	broad.mit.edu	37	chr3	183665138	183665138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcataagagatggcgagacCcgcataggctgggggaatct	15	8	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183665138	A	A	183665138	3	1	154	1	0	0	0	0	1	0	0	0	56	623	22	2	957	2	ABCC5	3	183665138	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	18909315	183665138	14357292	149	131826											
EHHADH	1962	broad.mit.edu	37	chr3	184910174	184910174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctagaactgtgggcaacCcaactgtggaagcatagaac	10	10	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184910174	A	A	184910174	3	1	154	1	0	0	0	0	1	0	0	0	5022	623	22	2	163	2	EHHADH	3	184910174	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1245036	184910174	13112256	150	131827											
LRCH3	84859	broad.mit.edu	37	chr3	197598394	197598394	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttgttaagcacagtggaCagacatttcttaagcattgt	8	7	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197598394	T	T	197598394	1	4	154	0	1	0	0	0	0	0	0	0	9021	493	17	4		4	LRCH3	3	197598394	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	12688220	197598394	424036	151	131828											
ZNF595	152687	broad.mit.edu	37	chr4	87020	87020	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaatgtgaagaatgtggCaaagcctttactcggtccac	9	9	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87020	A	A	87020	2	1	154	1	0	0	0	0	0	0	0	1	18152	710	25	3		3	ZNF595	4	87020	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08		87020	191067256	152	131829											
DGKQ	1609	broad.mit.edu	37	chr4	957013	957013	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagagcaggtctcggcccttGaggcctccactcttggggtt	13	13	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	957013	C	C	957013	2	2	154	1	0	0	0	0	0	0	0	1	4513	1277	45	4		4	DGKQ	4	957013	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	869993	957013	190197263	153	131830											
HTT	3064	broad.mit.edu	37	chr4	3137590	3137590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcggtaagtgtttactgaGtaactaaatgatttcattgt	10	4	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3137590	A	A	3137590	1	1	154	0	1	0	0	0	0	0	0	0	7527	1044	36	4		4	HTT	4	3137590	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	2180577	3137590	188016686	154	131831											
FBXL5	26234	broad.mit.edu	37	chr4	15627285	15627285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatcttcagcatctaacatCcacacataaggagaagtgaa	6	9	3	2	rs149921734		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15627285	A	A	15627285	3	1	154	1	0	0	0	0	1	0	0	0	5779	856	30	3	647	3	FBXL5	4	15627285	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	12489695	15627285	175526991	155	131832											
FBXL5	26234	broad.mit.edu	37	chr4	15627406	15627406	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aacaggcatactgcttggtgGactgcatggtaatgtcttta	11	7	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15627406	C	C	15627406	3	2	154	1	0	0	0	0	1	0	0	0	5779	1174	41	4	768	4	FBXL5	4	15627406	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	121	15627406	175526870	156	131833											
PPARGC1A	10891	broad.mit.edu	37	chr4	23815782	23815782	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaaggagagacctgctTgcttgcctccaaagtctctc	10	13	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23815782	A	A	23815782	4	1	154	1	0	0	0	0	0	1	0	0	12396	1821	63	5	1096	5	PPARGC1A	4	23815782	Nonsense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	8188376	23815782	167338494	157	131834											
GABRA4	2557	broad.mit.edu	37	chr4	46976153	46976153	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctggaaaatgtttgttgttCtcctgaaaaaattaactatt	6	5	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46976153	T	T	46976153	1	4	154	0	1	0	0	0	0	0	0	0	6223	928	32	4		4	GABRA4	4	46976153	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	23160371	46976153	144178123	158	131835											
GABRB1	2560	broad.mit.edu	37	chr4	47322210	47322211	+	Missense_Mutation	DNP	CC	AA	AA													ttggatgagcagaactgcacCctggagatcgaaagttgtga							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	47322211	AA	AA	47322210	3	1	154	1	0	0	0	0	1	0	0	0	6226	610	22	2	546	2	GABRB1	4	47322210	Missense_Mutation	DNP	CC	TCGA-50-5066-01A-01D-1625-08	346057	47322210	143832066	159	131836											
PDGFRA	5156	broad.mit.edu	37	chr4	55127425	55127425	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagagctccgatgtggaaatCagaaatgaagaaaacaacag	11	6	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55127425	G	G	55127425	3	3	154	1	0	0	0	0	1	0	0	0	11755	816	29	4	219	4	PDGFRA	4	55127425	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	7805215	55127425	136026851	160	131837											
KDR	3791	broad.mit.edu	37	chr4	55955049	55955049	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaaacctgctgagcattagCttgcaagagatttcccaaat	7	10	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55955049	G	G	55955049	3	3	154	1	0	0	0	0	1	0	0	0	8209	797	28	4	594	4	KDR	4	55955049	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	827624	55955049	135199227	161	131838											
KDR	3791	broad.mit.edu	37	chr4	55964777	55964778	+	Intron	DNP	GG	TT	TT													cccattgagccaataacaatGggaagaaacaactcaaagaa							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55964778	TT	TT	55964777	1	4	154	0	1	0	0	0	0	0	0	0	8209	1363	47	2		2	KDR	4	55964777	Intron	DNP	GG	TCGA-50-5066-01A-01D-1625-08	9728	55964777	135189499	162	131839											
LPHN3	23284	broad.mit.edu	37	chr4	62894657	62894657	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtggtcccatgaaccaGctgtcagatcagtactgaaa	10	10	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62894657	C	C	62894657	1	2	154	0	1	0	0	0	0	0	0	0	9004	986	34	4		4	LPHN3	4	62894657	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	6929880	62894657	128259619	163	131840											
TECRL	253017	broad.mit.edu	37	chr4	65188410	65188410	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaattaacacttactgtGgtccaactgacttgttgacc	6	10	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65188410	T	T	65188410	2	4	154	1	0	0	0	0	0	0	0	1	15868	1335	47	2		2	TECRL	4	65188410	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	2293753	65188410	125965866	164	131841											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68699044	68699044	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccctcctcagcctcagtGcctccaaggattctctgctc	6	18	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68699044	T	T	68699044	2	4	154	1	0	0	0	0	0	0	0	1	16364	1306	46	3		3	TMPRSS11D	4	68699044	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	3510634	68699044	122455232	165	131842											
UGT2B10	7365	broad.mit.edu	37	chr4	69884077	69884077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatatgtcagcttttccCattgtctcagataaggtagt	8	9	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69884077	A	A	69884077	3	1	154	1	0	0	0	0	1	0	0	0	17082	594	21	2	2470	2	UGT2B10	4	69884077	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1185033	69884077	121270199	166	131843											
ADAMTS3	9508	broad.mit.edu	37	chr4	73433035	73433035	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatattttgcttagctcaCttcattcccttactttcaac	2	12	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73433035	T	T	73433035	1	4	154	0	1	0	0	0	0	0	0	0	267	580	20	4		4	ADAMTS3	4	73433035	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	3548958	73433035	117721241	167	131844											
PRKG2	5593	broad.mit.edu	37	chr4	82125715	82125715	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaatattaagcccatctgaGtttaaaggatgcggaaattt	8	6	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82125715	C	C	82125715	1	2	154	0	1	0	0	0	0	0	0	0	12629	1044	36	4		4	PRKG2	4	82125715	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	8692680	82125715	109028561	168	131845											
WDFY3	23001	broad.mit.edu	37	chr4	85623548	85623548	+	Frame_Shift_Del	DEL	A	-	-													gaacaggaattctggtaaatAaaagaactctgggataagtt							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85623548	-	-	85623548	7	5	154	1	0	1	0	1	0	0	0	0	17397	362	13	0	2078	0	WDFY3	4	85623548	Frame_Shift_Del	DEL	A	TCGA-50-5066-01A-01D-1625-08	3497833	85623548	105530728	169	131846											
GRID2	2895	broad.mit.edu	37	chr4	94138122	94138122	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgggcaattgcaaggagAgctttatgagttgcattgga	14	4	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94138122	T	T	94138122	1	4	154	0	1	0	0	0	0	0	0	0	6838	319	11	5		5	GRID2	4	94138122	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	8514574	94138122	97016154	170	131847											
ADH1C	126	broad.mit.edu	37	chr4	100268947	100268947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgcaacctctacctcCtcaatggaaaagggtttctt	10	10	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100268947	A	A	100268947	3	1	154	1	0	0	0	0	1	0	0	0	309	680	24	2	1084	2	ADH1C	4	100268947	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	6130825	100268947	90885329	171	131848											
CENPE	1062	broad.mit.edu	37	chr4	104074252	104074252	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaattgttccttttctgcTataacactctctaacatttg	3	10	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104074252	C	C	104074252	3	2	154	1	0	0	0	0	1	0	0	0	3260	1512	53	5	5016	5	CENPE	4	104074252	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	3805305	104074252	87080024	172	131849											
CCDC109B	55013	broad.mit.edu	37	chr4	110606340	110606340	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgttgctgagtcaagtatCtttcttgcagaggcattatg	12	6	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110606340	G	G	110606340	1	3	154	0	1	0	0	0	0	0	0	0	2771	928	32	4		4	CCDC109B	4	110606340	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	6532088	110606340	80547936	173	131850											
ALPK1	80216	broad.mit.edu	37	chr4	113353354	113353354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacagccgcctggtcagaGggcggagacccccaattcct	13	14	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113353354	T	T	113353354	3	4	154	1	0	0	0	0	1	0	0	0	544	1000	35	2	2685	2	ALPK1	4	113353354	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2747014	113353354	77800922	174	131851											
METTL14	57721	broad.mit.edu	37	chr4	119609206	119609206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttttgagacaGggtttcactctgttgcttag	8	5	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119609206	T	T	119609206	1	4	154	0	1	0	0	0	0	0	0	0	9591	1015	35	2		2	METTL14	4	119609206	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	6255852	119609206	71545070	175	131852											
FAT4	79633	broad.mit.edu	37	chr4	126242334	126242334	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgagagtggcttcagcgTtggtgccttcacagttgatc	12	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126242334	C	C	126242334	2	2	154	1	0	0	0	0	0	0	0	1	5749	1722	60	5		5	FAT4	4	126242334	Silent	SNP	T	TCGA-50-5066-01A-01D-1625-08	6633128	126242334	64911942	176	131853											
PCDH10	57575	broad.mit.edu	37	chr4	134073399	134073399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggagagcaccagcgcCccagtcgctctggcggcggg	17	14	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134073399	A	A	134073399	3	1	154	1	0	0	0	0	1	0	0	0	11601	623	22	2	2106	2	PCDH10	4	134073399	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	7831065	134073399	57080877	177	131854											
FAT1	2195	broad.mit.edu	37	chr4	187518812	187518812	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctatgaaaaggtatgaaccTaaattttgaaagaaaccatt	7	5	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187518812	G	G	187518812	1	3	154	0	1	0	0	0	0	0	0	0	5746	1537	53	5		5	FAT1	4	187518812	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	53445413	187518812	3635464	178	131855											
NKD2	85409	broad.mit.edu	37	chr5	1038187	1038188	+	Missense_Mutation	DNP	CC	AA	AA													cagcagcaagtccgggaaagCcttcagctactacctgccgg							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	1038188	AA	AA	1038187	3	1	154	1	0	0	0	0	1	0	0	0	10537	739	26	3	1093	3	NKD2	5	1038187	Missense_Mutation	DNP	CC	TCGA-50-5066-01A-01D-1625-08		1038187	179877073	179	131856											
NKD2	85409	broad.mit.edu	37	chr5	1038314	1038314	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggcagggagggccactcGccactcaaggccccacacgc	13	16	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1038314	A	A	1038314	2	1	154	1	0	0	0	0	0	0	0	1	10537	1074	38	4		4	NKD2	5	1038314	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	127	1038314	179876946	180	131857											
SLC6A19	340024	broad.mit.edu	37	chr5	1208834	1208834	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccccgggaacggctctcAggcatggtggactcctccca	11	17	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1208834	T	T	1208834	1	4	154	0	1	0	0	0	0	0	0	0	14796	203	7	5		5	SLC6A19	5	1208834	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	170520	1208834	179706426	181	131858											
IRX2	153572	broad.mit.edu	37	chr5	2748740	2748740	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcggtgccccggttgagGccggcgcggcggccgcgggc	21	15	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2748740	A	A	2748740	3	1	154	1	0	0	0	0	1	0	0	0	7914	1203	42	4	341	4	IRX2	5	2748740	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1539906	2748740	178166520	182	131859											
ADCY2	108	broad.mit.edu	37	chr5	7804863	7804863	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccccatccacaaaccaCcctgggaccaaaacagccat	4	18	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7804863	A	A	7804863	1	1	154	0	1	0	0	0	0	0	0	0	294	522	18	3		3	ADCY2	5	7804863	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5056123	7804863	173110397	183	131860											
SEMA5A	9037	broad.mit.edu	37	chr5	9197423	9197423	+	Intron	DEL	C	-	-													cgcaatgctgttcctgggagCggagggagagagagaaggca							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9197423	-	-	9197423	6	5	154	0	1	1	0	1	0	0	0	0	14150	783	27	0		0	SEMA5A	5	9197423	Intron	DEL	C	TCGA-50-5066-01A-01D-1625-08	1392560	9197423	171717837	184	131861											
CTNND2	1501	broad.mit.edu	37	chr5	11364914	11364914	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagacgcggtcttcatagatGggatctatgtggtgttctgg	14	6	4	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11364914	C	C	11364914	2	2	154	1	0	0	0	0	0	0	0	1	4054	1335	47	4		4	CTNND2	5	11364914	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	2167491	11364914	169550346	185	131862											
CDH18	1016	broad.mit.edu	37	chr5	19503202	19503202	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcatctttatcagtggcaCtgatggtatgaataacctaa	7	7	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19503202	G	G	19503202	3	3	154	1	0	0	0	0	1	0	0	0	3133	565	20	4	855	4	CDH18	5	19503202	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	8138288	19503202	161412058	186	131863											
CDH12	1010	broad.mit.edu	37	chr5	21755753	21755753	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaacgccccagtgctaagtCctacaggtagaaaaattgct	8	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21755753	T	T	21755753	3	4	154	1	0	0	0	0	1	0	0	0	3128	855	30	4	560	4	CDH12	5	21755753	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2252551	21755753	159159507	187	131864											
PRDM9	56979	broad.mit.edu	37	chr5	23509862	23509862	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttttgcgtcagtgcagggCtgagtgtggatattgaccat	13	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23509862	G	G	23509862	1	3	154	0	1	0	0	0	0	0	0	0	12569	812	28	4		4	PRDM9	5	23509862	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1754109	23509862	157405398	188	131865											
PRDM9	56979	broad.mit.edu	37	chr5	23527423	23527423	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcagacaccagaggacacaCacaggggagaagccctatgt	11	12	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23527423	G	G	23527423	3	3	154	1	0	0	0	0	1	0	0	0	12569	477	17	4	2264	4	PRDM9	5	23527423	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	17561	23527423	157387837	189	131866											
CDH9	1007	broad.mit.edu	37	chr5	26915863	26915863	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacctgccgcccagtttttCtgtctatagccttggcacga	8	15	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26915863	A	A	26915863	3	1	154	1	0	0	0	0	1	0	0	0	3147	913	32	3	2011	3	CDH9	5	26915863	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3388440	26915863	153999397	190	131867											
ADAMTS12	81792	broad.mit.edu	37	chr5	33649002	33649002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacatcatagatcactccGggggcaatgaccttggactt	10	10	2	3	rs111792611		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33649002	T	T	33649002	2	4	154	1	0	0	0	0	0	0	0	1	257	1103	39	1		1	ADAMTS12	5	33649002	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	6733139	33649002	147266258	191	131868											
ADAMTS12	81792	broad.mit.edu	37	chr5	33662024	33662024	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtctctggtgtacctgGtgagaaggacagccacgtcg	14	9	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33662024	T	T	33662024	3	4	154	1	0	0	0	0	1	0	0	0	257	1261	44	3	3823	3	ADAMTS12	5	33662024	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	13022	33662024	147253236	192	131869											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881126	33881126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacaggggttcaactccCatatgtcagtgcatctgtga	9	11	4	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33881126	A	A	33881126	1	1	154	0	1	0	0	0	0	0	0	0	257	609	21	2		2	ADAMTS12	5	33881126	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	219102	33881126	147034134	193	131870											
IL7R	3575	broad.mit.edu	37	chr5	35857028	35857028	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttcctcttactctcattcAtttcatacacactggctcac	2	16	5	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35857028	T	T	35857028	1	4	154	0	1	0	0	0	0	0	0	0	7775	232	8	5		5	IL7R	5	35857028	5'UTR	SNP	A	TCGA-50-5066-01A-01D-1625-08	1975902	35857028	145058232	194	131871											
LIFR	3977	broad.mit.edu	37	chr5	38504033	38504033	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaattctttttgagaactaTtttatccaaaataatcacaa	2	6	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38504033	C	C	38504033	1	2	154	0	1	0	0	0	0	0	0	0	8852	1508	52	5		5	LIFR	5	38504033	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	2647005	38504033	142411227	195	131872											
C7	730	broad.mit.edu	37	chr5	40972774	40972774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcgaccttcatggtactGtatcaccatagctgtgagtc	11	10	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40972774	T	T	40972774	1	4	154	0	1	0	0	0	0	0	0	0	2400	1392	48	3		3	C7	5	40972774	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	2468741	40972774	139942486	196	131873											
TTC37	9652	broad.mit.edu	37	chr5	94848166	94848166	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatatcttgctattataTaacaggtaccttacctacat	3	9	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94848166	C	C	94848166	1	2	154	0	1	0	0	0	0	0	0	0	16831	1421	49	5		5	TTC37	5	94848166	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	53875392	94848166	86067094	197	131874											
CCDC112	153733	broad.mit.edu	37	chr5	114611781	114611781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaactgtaaaagaaacaCggaaaattattttgtgccat	6	7	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114611781	A	A	114611781	1	1	154	0	1	0	0	0	0	0	0	0	2775	551	19	3		3	CCDC112	5	114611781	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	19763615	114611781	66303479	198	131875											
DMXL1	1657	broad.mit.edu	37	chr5	118469421	118469421	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctaatgttatgatgatatCaaaacatgctgatggttctc	8	7	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118469421	T	T	118469421	3	4	154	1	0	0	0	0	1	0	0	0	4634	838	29	4	1848	4	DMXL1	5	118469421	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3857640	118469421	62445839	199	131876											
KLHL3	26249	broad.mit.edu	37	chr5	137013243	137013243	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtcataccttctcttcTgaagaaacggtcagcttgtc	7	12	4	2	rs143713380	byFrequency	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137013243	G	G	137013243	2	3	154	1	0	0	0	0	0	0	0	1	8454	1567	55	5		5	KLHL3	5	137013243	Silent	SNP	T	TCGA-50-5066-01A-01D-1625-08	18543822	137013243	43902017	200	131877											
TMEM173	340061	broad.mit.edu	37	chr5	138860697	138860697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagggcaggtcacaccagCcacagccaccacttggccag	10	17	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138860697	A	A	138860697	1	1	154	0	1	0	0	0	0	0	0	0	16212	754	26	3		3	TMEM173	5	138860697	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1847454	138860697	42054563	201	131878											
PCDHA2	56146	broad.mit.edu	37	chr5	140176239	140176239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgagaacgacaacgcgccgGcactgttggcgcctagggct	14	13	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140176239	T	T	140176239	3	4	154	1	0	0	0	0	1	0	0	0	11618	1203	42	3	1692	3	PCDHA2	5	140176239	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1315542	140176239	40739021	202	131879											
PCDHB6	56130	broad.mit.edu	37	chr5	140531034	140531034	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accttccgtggagaatttctAcaccctggtaacagaaggcg	10	11	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140531034	T	T	140531034	3	4	154	1	0	0	0	0	1	0	0	0	11640	391	14	5	1198	5	PCDHB6	5	140531034	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	354795	140531034	40384226	203	131880											
PCDHB14	56122	broad.mit.edu	37	chr5	140603978	140603978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatccaatatctggggaaGttaatttgagatcacccctg	8	8	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140603978	T	T	140603978	3	4	154	1	0	0	0	0	1	0	0	0	11633	1029	36	3	903	3	PCDHB14	5	140603978	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	72944	140603978	40311282	204	131881											
PCDH12	51294	broad.mit.edu	37	chr5	141336110	141336110	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggctgataagggctggagtCcttggtcttgggctaacaga	15	7	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141336110	T	T	141336110	3	4	154	1	0	0	0	0	1	0	0	0	11604	855	30	4	2263	4	PCDH12	5	141336110	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	732132	141336110	39579150	205	131882											
JAKMIP2	9832	broad.mit.edu	37	chr5	146971197	146971197	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaacaattttgccatctttGaaggtttagaagcacttgtc	7	7	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146971197	T	T	146971197	1	4	154	0	1	0	0	0	0	0	0	0	8011	1305	45	3		3	JAKMIP2	5	146971197	3'UTR	SNP	G	TCGA-50-5066-01A-01D-1625-08	5635087	146971197	33944063	206	131883											
GEMIN5	25929	broad.mit.edu	37	chr5	154271093	154271093	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttcagggtccgtttcttCagtgctggcagtgtctaact	11	9	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154271093	T	T	154271093	3	4	154	1	0	0	0	0	1	0	0	0	6395	835	29	4	568	4	GEMIN5	5	154271093	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	7299896	154271093	26644167	207	131884											
HAVCR2	84868	broad.mit.edu	37	chr5	156522332	156522332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacatttgaaaattaaagCgccgaagataagagccagag	9	7	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156522332	A	A	156522332	3	1	154	1	0	0	0	0	1	0	0	0	7040	768	27	3	256	3	HAVCR2	5	156522332	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2251239	156522332	24392928	208	131885											
HAVCR2	84868	broad.mit.edu	37	chr5	156533648	156533648	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtccactcacctggtttgatGaccaacttcaggttaaattt	7	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156533648	T	T	156533648	2	4	154	1	0	0	0	0	0	0	0	1	7040	1277	45	3		3	HAVCR2	5	156533648	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	11316	156533648	24381612	209	131886											
ADAM19	8728	broad.mit.edu	37	chr5	156932615	156932615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagctgggaggaacccctGggtcacactgtccaggtgtg	15	12	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156932615	T	T	156932615	1	4	154	0	1	0	0	0	0	0	0	0	240	1363	47	2		2	ADAM19	5	156932615	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	398967	156932615	23982645	210	131887											
DOCK2	1794	broad.mit.edu	37	chr5	169446070	169446070	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accataccaatcttcttcgaCatgatgctgtgtgaatatca	6	10	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169446070	T	T	169446070	2	4	154	1	0	0	0	0	0	0	0	1	4727	477	17	4		4	DOCK2	5	169446070	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	12513455	169446070	11469190	211	131888											
FGF18	8817	broad.mit.edu	37	chr5	170883632	170883632	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggctaagtactccggctgGtacgtgggcttcaccaagaa	12	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170883632	A	A	170883632	4	1	154	1	0	0	0	0	0	1	0	0	5903	1270	44	4	465	4	FGF18	5	170883632	Nonsense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1437562	170883632	10031628	212	131889											
C5orf41	153222	broad.mit.edu	37	chr5	172537595	172537595	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaaatcctaaaaaactcctCcagataggcaatgaacttcg	5	12	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172537595	A	A	172537595	2	1	154	1	0	0	0	0	0	0	0	1	2323	842	30	3		3	C5orf41	5	172537595	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	1653963	172537595	8377665	213	131890											
GRM6	2916	broad.mit.edu	37	chr5	178416417	178416417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaaatcctacagacagGgaagaagggggagggtggcg	18	6	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178416417	T	T	178416417	1	4	154	0	1	0	0	0	0	0	0	0	6867	1247	43	2		2	GRM6	5	178416417	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	5878822	178416417	2498843	214	131891											
OR2V2	285659	broad.mit.edu	37	chr5	180582367	180582367	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcatgaatcagagggtctGtctccagattactgggagct	11	10	4	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180582367	C	C	180582367	3	2	154	1	0	0	0	0	1	0	0	0	11125	1377	48	4	427	4	OR2V2	5	180582367	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2165950	180582367	332893	215	131892											
CDYL	9425	broad.mit.edu	37	chr6	4935956	4935956	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcaggatggcttcacccAcatcttgttatccacaaagt	8	11	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4935956	G	G	4935956	3	3	154	1	0	0	0	0	1	0	0	0	3215	159	6	5	909	5	CDYL	6	4935956	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08		4935956	166179111	216	131893											
RREB1	6239	broad.mit.edu	37	chr6	7230298	7230298	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaggtgtttgccttctcgGgggtcttgcgtgcccacgtg	14	12	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7230298	C	C	7230298	3	2	154	1	0	0	0	0	1	0	0	0	13790	1232	43	4	1992	4	RREB1	6	7230298	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2294342	7230298	163884769	217	131894											
ZNF184	7738	broad.mit.edu	37	chr6	27420578	27420578	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgaaggctttttcacattCattacatttgtagggttttt	8	6	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27420578	A	A	27420578	4	1	154	1	0	0	0	0	0	1	0	0	17877	835	29	3	1499	3	ZNF184	6	27420578	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	20190280	27420578	143694489	218	131895											
OR11A1	26531	broad.mit.edu	37	chr6	29394972	29394972	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacaaatccagagagccaGgttgtgaccaccagccccat	8	15	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29394972	T	T	29394972	2	4	154	1	0	0	0	0	0	0	0	1	11018	987	35	2		2	OR11A1	6	29394972	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	1974394	29394972	141720095	219	131896											
ABCF1	23	broad.mit.edu	37	chr6	30553782	30553782	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcggtgagcacctgagGgacttctgggctgggggcca	19	10	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30553782	C	C	30553782	1	2	154	0	1	0	0	0	0	0	0	0	65	1247	43	4		4	ABCF1	6	30553782	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1158810	30553782	140561285	220	131897											
CLIC1	1192	broad.mit.edu	37	chr6	31698644	31698644	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagggcctttgccacttgcTcataggcgagctcgatctcc	11	13	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31698644	A	A	31698644	3	1	154	1	0	0	0	0	1	0	0	0	3557	1551	54	5	28	5	CLIC1	6	31698644	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	1144862	31698644	139416423	221	131898											
HSPA1B	3304	broad.mit.edu	37	chr6	31797652	31797653	+	Frame_Shift_Ins	INS	-	G	G													accattgaggaggtggattaINSggggcctttgttctttagta							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31797653	G	G	31797652	7	5	154	1	0	1	1	0	0	0	0	0	7478	433	15	0	1927	0	HSPA1B	6	31797652	Frame_Shift_Ins	INS	-	TCGA-50-5066-01A-01D-1625-08	99008	31797652	139317415	222	131899											
TCP11	6954	broad.mit.edu	37	chr6	35085943	35085943	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtactggctgcagggcCtgggatagaagctcactgtc	15	9	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35085943	T	T	35085943	1	4	154	0	1	0	0	0	0	0	0	0	15835	696	24	4		4	TCP11	6	35085943	3'UTR	SNP	C	TCGA-50-5066-01A-01D-1625-08	3288291	35085943	136029124	223	131900											
PPARD	5467	broad.mit.edu	37	chr6	35388099	35388099	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctggccactgaggctgtGgtcacatggtgaattgaccc	14	10	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35388099	A	A	35388099	1	1	154	0	1	0	0	0	0	0	0	0	12394	1363	47	4		4	PPARD	6	35388099	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	302156	35388099	135726968	224	131901											
CPNE5	57699	broad.mit.edu	37	chr6	36714407	36714407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccctccaagtcacccCgggttcagaatgaagaaggg	12	12	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36714407	A	A	36714407	1	1	154	0	1	0	0	0	0	0	0	0	3847	667	23	1		1	CPNE5	6	36714407	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1326308	36714407	134400660	225	131902											
PRICKLE4	29964	broad.mit.edu	37	chr6	41753093	41753093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtagggagctgctgaagCcaggggagtacggagtgttt	18	5	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41753093	A	A	41753093	3	1	154	1	0	0	0	0	1	0	0	0	12595	739	26	3	411	3	PRICKLE4	6	41753093	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5038686	41753093	129361974	226	131903											
TFAP2D	83741	broad.mit.edu	37	chr6	50683152	50683152	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctgcacaatgcgcgggcGctcaagtcgtcctgcctgga	12	14	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50683152	T	T	50683152	2	4	154	1	0	0	0	0	0	0	0	1	15913	1074	38	3		3	TFAP2D	6	50683152	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	8930059	50683152	120431915	227	131904											
TFAP2B	7021	broad.mit.edu	37	chr6	50810801	50810801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcctcgcccacccctttGcaggcaactttgtaaagaat	8	13	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50810801	T	T	50810801	1	4	154	0	1	0	0	0	0	0	0	0	15911	1334	46	3		3	TFAP2B	6	50810801	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	127649	50810801	120304266	228	131905											
COL21A1	81578	broad.mit.edu	37	chr6	55924883	55924883	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaacaccatctcttcctggCaaaccaggtaatcctctggg	9	13	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55924883	G	G	55924883	3	3	154	1	0	0	0	0	1	0	0	0	3712	709	25	4	344	4	COL21A1	6	55924883	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5114082	55924883	115190184	229	131906											
FAM135A	57579	broad.mit.edu	37	chr6	71235313	71235313	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttgacatccataaactcTctaccctccgatgatgaact	4	13	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71235313	C	C	71235313	2	2	154	1	0	0	0	0	0	0	0	1	5494	1538	54	5		5	FAM135A	6	71235313	Silent	SNP	T	TCGA-50-5066-01A-01D-1625-08	15310430	71235313	99879754	230	131907											
ELOVL4	6785	broad.mit.edu	37	chr6	80634726	80634726	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaatatagctatatccCgcattatatgatcccatgaa	6	9	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80634726	A	A	80634726	2	1	154	1	0	0	0	0	0	0	0	1	5118	639	23	1		1	ELOVL4	6	80634726	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	9399413	80634726	90480341	231	131908											
GABRR1	2569	broad.mit.edu	37	chr6	89895098	89895098	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaactgggagagtgagaTccgttcatctgtctttaagg	14	6	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89895098	C	C	89895098	3	2	154	1	0	0	0	0	1	0	0	0	6236	1435	50	5	728	5	GABRR1	6	89895098	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	9260372	89895098	81219969	232	131909											
MDN1	23195	broad.mit.edu	37	chr6	90382916	90382916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctataagacatcatttctaCactggactttcattccctga	4	11	4	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90382916	A	A	90382916	1	1	154	0	1	0	0	0	0	0	0	0	9508	493	17	3		3	MDN1	6	90382916	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	487818	90382916	80732151	233	131910											
FHL5	9457	broad.mit.edu	37	chr6	97058419	97058419	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaattgtaatggctcccatgGtcattgccttttctgtggtc	10	9	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97058419	C	C	97058419	1	2	154	0	1	0	0	0	0	0	0	0	5938	1276	44	4		4	FHL5	6	97058419	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	6675503	97058419	74056648	234	131911											
FIG4	9896	broad.mit.edu	37	chr6	110037721	110037721	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatagaacaaagatgggacAgaaaggatcctcgggcttat	11	6	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110037721	T	T	110037721	3	4	154	1	0	0	0	0	1	0	0	0	5945	188	7	5	249	5	FIG4	6	110037721	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	12979302	110037721	61077346	235	131912											
GPRC6A	222545	broad.mit.edu	37	chr6	117121732	117121732	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgagtgctacaaaacggcCtacaacaaggttaccttaag	8	9	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117121732	T	T	117121732	1	4	154	0	1	0	0	0	0	0	0	0	6794	696	24	4		4	GPRC6A	6	117121732	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	7084011	117121732	53993335	236	131913											
SLC35F1	222553	broad.mit.edu	37	chr6	118588223	118588223	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcctgctgatccggtaCaaggctgtgcatttcatcgg	10	11	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118588223	A	A	118588223	4	1	154	1	0	0	0	0	0	1	0	0	14702	489	17	3	557	3	SLC35F1	6	118588223	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1466491	118588223	52526844	237	131914											
FAM184A	79632	broad.mit.edu	37	chr6	119327194	119327194	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actttatttggaaatacagtCagtacagatgtattaagtta	7	4	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119327194	A	A	119327194	1	1	154	0	1	0	0	0	0	0	0	0	5557	841	29	3		3	FAM184A	6	119327194	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	738971	119327194	51787873	238	131915											
NKAIN2	154215	broad.mit.edu	37	chr6	124676363	124676363	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgttttatttgaatcatactCaactgattccaaattaatta	3	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124676363	T	T	124676363	1	4	154	0	1	0	0	0	0	0	0	0	10531	841	29	4		4	NKAIN2	6	124676363	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5349169	124676363	46438704	239	131916											
PTPRK	5796	broad.mit.edu	37	chr6	128294223	128294223	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtctttactgcatggaaaaCatcgacaacattttgccgtt	7	9	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128294223	G	G	128294223	3	3	154	1	0	0	0	0	1	0	0	0	12913	478	17	4	117	4	PTPRK	6	128294223	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3617860	128294223	42820844	240	131917											
LAMA2	3908	broad.mit.edu	37	chr6	129250338	129250338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggggatagttacagaggCaagagctcccacccagcgcc	12	12	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129250338	A	A	129250338	1	1	154	0	1	0	0	0	0	0	0	0	8678	725	25	3		3	LAMA2	6	129250338	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	956115	129250338	41864729	241	131918											
MED23	9439	broad.mit.edu	37	chr6	131927661	131927661	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtattggaatctgtagcTtggagttgtcattttgagct	13	4	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131927661	G	G	131927661	3	3	154	1	0	0	0	0	1	0	0	0	9534	1609	56	5	2856	5	MED23	6	131927661	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	2677323	131927661	39187406	242	131919											
MYB	4602	broad.mit.edu	37	chr6	135516134	135516134	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaattctgacatctttagcGactgggcagccaactgggat	11	9	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135516134	T	T	135516134	1	4	154	0	1	0	0	0	0	0	0	0	10101	1073	37	3		3	MYB	6	135516134	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3588473	135516134	35598933	243	131920											
PDE7B	27115	broad.mit.edu	37	chr6	136472232	136472232	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attacagagactttaggtctTattgtcaatcttgatatttt	6	5	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136472232	A	A	136472232	1	1	154	0	1	0	0	0	0	0	0	0	11746	1769	61	5		5	PDE7B	6	136472232	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	956098	136472232	34642835	244	131921											
TXLNB	167838	broad.mit.edu	37	chr6	139576610	139576610	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccccatcccctgccacatAggaggacttctgctgcccac	7	20	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139576610	G	G	139576610	1	3	154	0	1	0	0	0	0	0	0	0	16914	435	15	5		5	TXLNB	6	139576610	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	3104378	139576610	31538457	245	131922											
ULBP3	79465	broad.mit.edu	37	chr6	150385936	150385936	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctgctaccccaggtcatCcgggaaggcagaggatttgt	12	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150385936	A	A	150385936	1	1	154	0	1	0	0	0	0	0	0	0	17100	870	30	3		3	ULBP3	6	150385936	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	10809326	150385936	20729131	246	131923											
SLC22A1	6580	broad.mit.edu	37	chr6	160543347	160543347	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccaggatggctgggtgtAtgacacgcccggctcttcca	13	13	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160543347	G	G	160543347	3	3	154	1	0	0	0	0	1	0	0	0	14553	449	16	5	382	5	SLC22A1	6	160543347	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	10157411	160543347	10571720	247	131924											
AMZ1	155185	broad.mit.edu	37	chr7	2740344	2740344	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgcctccctgcagcacCggaagccccgcctggctcgg	11	20	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2740344	A	A	2740344	2	1	154	1	0	0	0	0	0	0	0	1	596	643	23	1		1	AMZ1	7	2740344	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08		2740344	156398319	248	131925											
THSD7A	221981	broad.mit.edu	37	chr7	11485770	11485770	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaacgatatccttgtccGcattccttgatgtctccttg	8	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11485770	T	T	11485770	4	4	154	1	0	0	0	0	0	1	0	0	16002	1079	38	3	2051	3	THSD7A	7	11485770	Nonsense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	8745426	11485770	147652893	249	131926											
DNAH11	8701	broad.mit.edu	37	chr7	21826986	21826986	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttctctgcagccaaaatGggttcattgcaataaatctt	6	8	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21826986	A	A	21826986	1	1	154	0	1	0	0	0	0	0	0	0	4639	1363	47	4		4	DNAH11	7	21826986	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	10341216	21826986	137311677	250	131927											
SEPT7	989	broad.mit.edu	37	chr7	35913313	35913313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctacctaaatgcagaatcacGagtgaacagacgtcagatgc	9	10	2	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35913313	T	T	35913313	3	4	154	1	0	0	0	0	1	0	0	0	14182	1058	37	3	456	3	SEPT7	7	35913313	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	14086327	35913313	123225350	251	131928											
ZMIZ2	83637	broad.mit.edu	37	chr7	44801467	44801467	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtgtgccagccaggccGcaacaccatccagatcaccg	10	16	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44801467	T	T	44801467	3	4	154	1	0	0	0	0	1	0	0	0	17823	1087	38	3	1597	3	ZMIZ2	7	44801467	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	8888154	44801467	114337196	252	131929											
POM121L12	285877	broad.mit.edu	37	chr7	53104055	53104055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcggttgcttccttcgtgCccaggccagggcctctgaag	14	13	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104055	A	A	53104055	3	1	154	1	0	0	0	0	1	0	0	0	12336	739	26	3	693	3	POM121L12	7	53104055	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	8302588	53104055	106034608	253	131930											
EGFR	1956	broad.mit.edu	37	chr7	55220240	55220240	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacctttgctctttttcagtGaccaaaatcatctgtgccca	5	12	4	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55220240	T	T	55220240	2	4	154	1	0	0	0	0	0	0	0	1	5007	1304	45	3		3	EGFR	7	55220240	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	2116185	55220240	103918423	254	131931											
ZNF107	51427	broad.mit.edu	37	chr7	64167419	64167419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaacctctacaagtGtaaagaatgtggaaaagctt	11	5	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64167419	T	T	64167419	3	4	154	1	0	0	0	0	1	0	0	0	17841	1377	48	3	743	3	ZNF107	7	64167419	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	8947179	64167419	94971244	255	131932											
CD36	948	broad.mit.edu	37	chr7	80290604	80290604	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcctatcattagaattatTaggttttacttgtttttcca	4	6	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80290604	G	G	80290604	1	3	154	0	1	0	0	0	0	0	0	0	3037	1769	61	5		5	CD36	7	80290604	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	16123185	80290604	78848059	256	131933											
ABCB1	5243	broad.mit.edu	37	chr7	87190651	87190651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagacctcttcagctactGctccagcttttgcatacgct	6	15	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87190651	T	T	87190651	3	4	154	1	0	0	0	0	1	0	0	0	40	1319	46	3	3171	3	ABCB1	7	87190651	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	6900047	87190651	71948012	257	131934											
C7orf63	79846	broad.mit.edu	37	chr7	89901016	89901016	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattattaagtttaaacacTtcattgtcaactacttttgt	3	6	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89901016	A	A	89901016	1	1	154	0	1	0	0	0	0	0	0	0	2434	1624	56	5		5	C7orf63	7	89901016	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	2710365	89901016	69237647	258	131935											
GTPBP10	85865	broad.mit.edu	37	chr7	89983860	89983860	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgaaaatggtaaaattAtaggtgagtgtactataact	9	3	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89983860	T	T	89983860	3	4	154	1	0	0	0	0	1	0	0	0	6944	449	16	5	326	5	GTPBP10	7	89983860	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	82844	89983860	69154803	259	131936											
COL1A2	1278	broad.mit.edu	37	chr7	94039035	94039035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcattttccttcacagGgccttcccggcgttgctggg	11	14	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94039035	T	T	94039035	3	4	154	1	0	0	0	0	1	0	0	0	3710	1246	43	2	1011	2	COL1A2	7	94039035	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	4055175	94039035	65099628	260	131937											
MUC17	140453	broad.mit.edu	37	chr7	100680387	100680387	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgctgtcaccagcacacCtgtgaccacttatgctcaag	7	16	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100680387	T	T	100680387	3	4	154	1	0	0	0	0	1	0	0	0	10068	681	24	4	5700	4	MUC17	7	100680387	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	6641352	100680387	58458276	261	131938											
TRIM56	81844	broad.mit.edu	37	chr7	100731915	100731915	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggaggaggacagggcccAgacaccccacgaggatggag	16	11	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100731915	T	T	100731915	3	4	154	1	0	0	0	0	1	0	0	0	16655	188	7	5	1324	5	TRIM56	7	100731915	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	51528	100731915	58406748	262	131939											
MOGAT3	346606	broad.mit.edu	37	chr7	100843666	100843666	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccccaccatctctggctacCtgggcccccatccggagctc	8	20	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100843666	G	G	100843666	1	3	154	0	1	0	0	0	0	0	0	0	9790	696	24	4		4	MOGAT3	7	100843666	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	111751	100843666	58294997	263	131940											
GPR22	2845	broad.mit.edu	37	chr7	107114603	107114603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaccaatatgtaccaacCactatcatatccgttaagct	3	13	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107114603	A	A	107114603	3	1	154	1	0	0	0	0	1	0	0	0	6747	594	21	2	100	2	GPR22	7	107114603	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	6270937	107114603	52024060	264	131941											
SLC26A4	5172	broad.mit.edu	37	chr7	107350482	107350482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggaactaacaaaacattGtgtctttcttttgaagatta	6	6	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107350482	T	T	107350482	1	4	154	0	1	0	0	0	0	0	0	0	14633	1392	48	3		3	SLC26A4	7	107350482	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	235879	107350482	51788181	265	131942											
GPR85	54329	broad.mit.edu	37	chr7	112724196	112724196	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagctgtgtggctaggaggAtgagagcaagaagcagcata	15	6	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112724196	T	T	112724196	3	4	154	1	0	0	0	0	1	0	0	0	6780	333	12	5	535	5	GPR85	7	112724196	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	5373714	112724196	46414467	266	131943											
SLC13A1	6561	broad.mit.edu	37	chr7	122755726	122755726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccttgaacaggaaagagCataaatgtcagtgtcccaga	9	8	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122755726	A	A	122755726	1	1	154	0	1	0	0	0	0	0	0	0	14504	725	25	3		3	SLC13A1	7	122755726	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	10031530	122755726	36382937	267	131944											
PAX4	5078	broad.mit.edu	37	chr7	127251539	127251539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctggaggttgagtcaGtcgaccctccctacatcctg	9	16	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127251539	T	T	127251539	1	4	154	0	1	0	0	0	0	0	0	0	11575	1044	36	3		3	PAX4	7	127251539	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	4495813	127251539	31887124	268	131945											
FLNC	2318	broad.mit.edu	37	chr7	128486278	128486278	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgggcagggccgggatctGatgatattgccctcggggca	17	9	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128486278	C	C	128486278	1	2	154	0	1	0	0	0	0	0	0	0	5993	1305	45	4		4	FLNC	7	128486278	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1234739	128486278	30652385	269	131946											
PLXNA4	91584	broad.mit.edu	37	chr7	131831115	131831115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggattctgaggttcgGtacggggaatggtcagcagt	17	5	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131831115	T	T	131831115	1	4	154	0	1	0	0	0	0	0	0	0	12217	1276	44	3		3	PLXNA4	7	131831115	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3344837	131831115	27307548	270	131947											
AKR1B1	231	broad.mit.edu	37	chr7	134135471	134135471	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacgtaatctgctaagggAgctcaaaacacaccacaggt	8	12	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134135471	G	G	134135471	1	3	154	0	1	0	0	0	0	0	0	0	466	319	11	5		5	AKR1B1	7	134135471	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	2304356	134135471	25003192	271	131948											
MGAM	8972	broad.mit.edu	37	chr7	141727437	141727437	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcggccagcccttccctccTactgggcgcttggatttcac	11	16	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141727437	A	A	141727437	3	1	154	1	0	0	0	0	1	0	0	0	9634	1522	53	5	1157	5	MGAM	7	141727437	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	7591966	141727437	17411226	272	131949											
MGAM	8972	broad.mit.edu	37	chr7	141776013	141776013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactttcagatactgtggcCaagaaagtatatcttttatg	7	7	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141776013	A	A	141776013	1	1	154	0	1	0	0	0	0	0	0	0	9634	609	21	2		2	MGAM	7	141776013	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	48576	141776013	17362650	273	131950											
PRSS1	5644	broad.mit.edu	37	chr7	142458454	142458454	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcgttgggggctacaactGtgaggagaattctgtcccct	13	9	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142458454	A	A	142458454	3	1	154	1	0	0	0	0	1	0	0	0	12720	1377	48	4	95	4	PRSS1	7	142458454	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	682441	142458454	16680209	274	131951											
TPK1	27010	broad.mit.edu	37	chr7	144345202	144345202	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtagggtggctcagtggaatCcattttgttaataccaacaa	10	7	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144345202	A	A	144345202	1	1	154	0	1	0	0	0	0	0	0	0	16528	870	30	3		3	TPK1	7	144345202	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1886748	144345202	14793461	275	131952											
SSPO	23145	broad.mit.edu	37	chr7	149508616	149508616	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcagtgacctccttttaAcctgatcacctctgtacaga	5	14	3	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149508616	G	G	149508616	1	3	154	0	1	0	0	0	0	0	0	0	15307	58	2	5		5	SSPO	7	149508616	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	5163414	149508616	9630047	276	131953											
SSPO	23145	broad.mit.edu	37	chr7	149525007	149525007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccagcccgggcacttccGcagccaggcaggcccctgcg	14	18	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149525007	T	T	149525007	3	4	154	1	0	0	0	0	1	0	0	0	15307	1087	38	3	15324	3	SSPO	7	149525007	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	16391	149525007	9613656	277	131954											
GIMAP5	55340	broad.mit.edu	37	chr7	150439330	150439330	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggattatcctagtgggcAaaacaggctgcgggaaaagt	14	6	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150439330	C	C	150439330	3	2	154	1	0	0	0	0	1	0	0	0	6446	131	5	5	109	5	GIMAP5	7	150439330	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	914323	150439330	8699333	278	131955											
UBE3C	9690	broad.mit.edu	37	chr7	156990505	156990505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgactcccatctgctaacCtgatttgaatttttgttgtt	6	9	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156990505	A	A	156990505	1	1	154	0	1	0	0	0	0	0	0	0	17007	696	24	2		2	UBE3C	7	156990505	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	6551175	156990505	2148158	279	131956											
PTPRN2	5799	broad.mit.edu	37	chr7	157926523	157926523	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggagctccccaaacgcagCggccccgggctccgaatgcg	13	16	0	0	rs151334443		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157926523	G	G	157926523	3	3	154	1	0	0	0	0	1	0	0	0	12916	768	27	4	1705	4	PTPRN2	7	157926523	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	936018	157926523	1212140	280	131957											
MYOM2	9172	broad.mit.edu	37	chr8	2044061	2044061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccaactgaggccctcggtAactccctggttgtgcttcct	9	16	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2044061	T	T	2044061	1	4	154	0	1	0	0	0	0	0	0	0	10186	377	13	5		5	MYOM2	8	2044061	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08		2044061	144319961	281	131958											
BNIP3L	665	broad.mit.edu	37	chr8	26238534	26238534	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatattcttgatatcagtCacgatatatgtgtatgaagt	7	4	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26238534	T	T	26238534	1	4	154	0	1	0	0	0	0	0	0	0	1485	841	29	4		4	BNIP3L	8	26238534	5'Flank	SNP	C	TCGA-50-5066-01A-01D-1625-08	24194473	26238534	120125488	282	131959											
TEX15	56154	broad.mit.edu	37	chr8	30702510	30702510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccctcactatctgtcaCtgcagcggctgataactgag	8	13	4	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30702510	A	A	30702510	3	1	154	1	0	0	0	0	1	0	0	0	15901	565	20	3	4361	3	TEX15	8	30702510	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	4463976	30702510	115661512	283	131960											
ANK1	286	broad.mit.edu	37	chr8	41582018	41582018	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctgttgaggagcaactGggccacgttgaggttctcgt	13	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41582018	A	A	41582018	4	1	154	1	0	0	0	0	0	1	0	0	620	1357	47	4	5476	4	ANK1	8	41582018	Nonsense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	10879508	41582018	104782004	284	131961											
SNAI2	6591	broad.mit.edu	37	chr8	49831549	49831549	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaaaaaggcttctccccTgggggtggagtgggagaaaa	15	7	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49831549	A	A	49831549	1	1	154	0	1	0	0	0	0	0	0	0	14941	1594	55	5		5	SNAI2	8	49831549	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	8249531	49831549	96532473	285	131962											
SNTG1	54212	broad.mit.edu	37	chr8	51571223	51571223	+	Frame_Shift_Del	DEL	G	-	-													attatgtgcaagatcctcaaGgtatgatcaatatgtagtca							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51571223	-	-	51571223	7	5	154	1	0	1	0	1	0	0	0	0	14988	1014	35	0	1088	0	SNTG1	8	51571223	Frame_Shift_Del	DEL	G	TCGA-50-5066-01A-01D-1625-08	1739674	51571223	94792799	286	131963											
PXDNL	137902	broad.mit.edu	37	chr8	52320844	52320844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggactgagaaggtaggaggGtgcccgccatttagcagcca	15	9	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52320844	A	A	52320844	3	1	154	1	0	0	0	0	1	0	0	0	12956	1261	44	4	1079	4	PXDNL	8	52320844	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	749621	52320844	94043178	287	131964											
TGS1	96764	broad.mit.edu	37	chr8	56725548	56725548	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtaaaacacatctctttcTgattagaaattagctgctgt	6	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56725548	A	A	56725548	1	1	154	0	1	0	0	0	0	0	0	0	15960	1595	55	5		5	TGS1	8	56725548	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	4404704	56725548	89638474	288	131965											
PLAG1	5324	broad.mit.edu	37	chr8	57079013	57079013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgatagaggattatagGgaggaccatttaaaggtatg	12	5	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57079013	T	T	57079013	3	4	154	1	0	0	0	0	1	0	0	0	12113	1232	43	2	214	2	PLAG1	8	57079013	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	353465	57079013	89285009	289	131966											
GGH	8836	broad.mit.edu	37	chr8	63927973	63927973	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gataaatcaatgctttctccTcttcagattcagatttaaaa	4	8	5	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63927973	A	A	63927973	3	1	154	1	0	0	0	0	1	0	0	0	6421	1551	54	5	85	5	GGH	8	63927973	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	6848960	63927973	82436049	290	131967											
TTPA	7274	broad.mit.edu	37	chr8	63985621	63985621	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttatttctggacattctgcTctccacttataatagttttt	4	9	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63985621	A	A	63985621	3	1	154	1	0	0	0	0	1	0	0	0	16862	1548	54	5	621	5	TTPA	8	63985621	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	57648	63985621	82378401	291	131968											
ARFGEF1	10565	broad.mit.edu	37	chr8	68139522	68139522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctatacaccgtacaaCcatatctcgaattgttggag	8	10	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68139522	A	A	68139522	3	1	154	1	0	0	0	0	1	0	0	0	854	507	18	3	1835	3	ARFGEF1	8	68139522	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	4153901	68139522	78224500	292	131969											
EYA1	2138	broad.mit.edu	37	chr8	72234401	72234401	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaaagtctactcagagaaGttatttattgattaagagaa	7	3	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72234401	A	A	72234401	1	1	154	0	1	0	0	0	0	0	0	0	5371	1044	36	4		4	EYA1	8	72234401	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	4094879	72234401	74129621	293	131970											
TRPA1	8989	broad.mit.edu	37	chr8	72963077	72963077	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttattgcctggagaattaTgactgaaaatcttaagacat	7	5	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72963077	C	C	72963077	3	2	154	1	0	0	0	0	1	0	0	0	16702	1464	51	5	1570	5	TRPA1	8	72963077	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	728676	72963077	73400945	294	131971											
MMP16	4325	broad.mit.edu	37	chr8	89128839	89128839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtctgccggttggaggcCgaggaggttttggcctgtca	18	8	2	0	rs146269135		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89128839	T	T	89128839	3	4	154	1	0	0	0	0	1	0	0	0	9748	652	23	4	1019	4	MMP16	8	89128839	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	16165762	89128839	57235183	295	131972											
TMEM67	91147	broad.mit.edu	37	chr8	94805438	94805438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttagattgctttgggtGtattgggtgggctagctgtt	14	3	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94805438	T	T	94805438	3	4	154	1	0	0	0	0	1	0	0	0	16319	1377	48	3	1788	3	TMEM67	8	94805438	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	5676599	94805438	51558584	296	131973											
RGS22	26166	broad.mit.edu	37	chr8	101018192	101018192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccccatacataaagtgGtaaccctctccaggataaaa	6	13	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101018192	T	T	101018192	1	4	154	0	1	0	0	0	0	0	0	0	13414	1276	44	3		3	RGS22	8	101018192	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	6212754	101018192	45345830	297	131974											
UBR5	51366	broad.mit.edu	37	chr8	103316347	103316347	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattgcatttgcaatggcctCaacagcagaaagcctttctg	8	10	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103316347	T	T	103316347	3	4	154	1	0	0	0	0	1	0	0	0	17031	835	29	4	5673	4	UBR5	8	103316347	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2298155	103316347	43047675	298	131975											
RIMS2	9699	broad.mit.edu	37	chr8	105105732	105105732	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggatcctcatagaggggcaGataatgtttctactaaatct	10	7	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105105732	T	T	105105732	3	4	154	1	0	0	0	0	1	0	0	0	13479	957	33	3		3	RIMS2	8	105105732	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1789385	105105732	41258290	299	131976											
RIMS2	9699	broad.mit.edu	37	chr8	105263934	105263934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatatggtgatcggatgGttcaaacttttcccaccttc	7	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105263934	T	T	105263934	3	4	154	1	0	0	0	0	1	0	0	0	13479	1270	44	3	4226	3	RIMS2	8	105263934	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	158202	105263934	41100088	300	131977											
TMEM74	157753	broad.mit.edu	37	chr8	109797177	109797177	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttccatctcggttgctcTtggggtggatgcacactgtt	11	12	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109797177	C	C	109797177	3	2	154	1	0	0	0	0	1	0	0	0	16325	1617	56	5	770	5	TMEM74	8	109797177	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	4533243	109797177	36566845	301	131978											
NUDCD1	84955	broad.mit.edu	37	chr8	110287816	110287816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttgtttctatcttctaTagaaagaaccctccggtgtc	7	9	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110287816	C	C	110287816	1	2	154	0	1	0	0	0	0	0	0	0	10817	1421	49	5		5	NUDCD1	8	110287816	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	490639	110287816	36076206	302	131979											
CSMD3	114788	broad.mit.edu	37	chr8	113668587	113668587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatctaagattaaaagacaCatgtgaaaatatatttagaa	5	3	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113668587	A	A	113668587	1	1	154	0	1	0	0	0	0	0	0	0	3980	493	17	3		3	CSMD3	8	113668587	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	3380771	113668587	32695435	303	131980											
CSMD3	114788	broad.mit.edu	37	chr8	114448761	114448761	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcatttcctatctgagggGgggagaacgagctgtgaatc	14	7	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114448761	A	A	114448761	1	1	154	0	1	0	0	0	0	0	0	0	3980	1247	43	4		4	CSMD3	8	114448761	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	780174	114448761	31915261	304	131981											
TRPS1	7227	broad.mit.edu	37	chr8	116632237	116632237	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggctccaggatctggccctCgccttcacttgcaacgtttc	9	15	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116632237	G	G	116632237	3	3	154	1	0	0	0	0	1	0	0	0	16718	893	31	4	3816	4	TRPS1	8	116632237	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2183476	116632237	29731785	305	131982											
TNFRSF11B	4982	broad.mit.edu	37	chr8	119941227	119941227	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcgtttcccagcagatgcCctcttaacacagttttggaa	7	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119941227	T	T	119941227	1	4	154	0	1	0	0	0	0	0	0	0	16408	638	22	4		4	TNFRSF11B	8	119941227	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	3308990	119941227	26422795	306	131983											
TAF2	6873	broad.mit.edu	37	chr8	120809131	120809131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtgtctcttaaattagCtatctgcaattagggcaaag	8	7	2	0	rs149567370	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120809131	A	A	120809131	1	1	154	0	1	0	0	0	0	0	0	0	15643	812	28	3		3	TAF2	8	120809131	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	867904	120809131	25554891	307	131984											
WDR67	93594	broad.mit.edu	37	chr8	124154754	124154754	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgattttttttttttttttAaaagacagagtctcactttg	5	4	1	3	rs68167124		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124154754	T	T	124154754	1	4	154	0	1	0	0	0	0	0	0	0	17445	377	13	5		5	WDR67	8	124154754	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	3345623	124154754	22209268	308	131985											
FER1L6	654463	broad.mit.edu	37	chr8	125033871	125033871	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaaatgattcacgaagccCaaaactttgtggaaaaaatc	7	7	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125033871	G	G	125033871	3	3	154	1	0	0	0	0	1	0	0	0	5872	595	21	4	2157	4	FER1L6	8	125033871	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	879117	125033871	21330151	309	131986											
FER1L6	654463	broad.mit.edu	37	chr8	125113407	125113407	+	Frame_Shift_Del	DEL	C	-	-													aactccctgactggagagggCaacttcaactggcgcttcct							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125113407	-	-	125113407	7	5	154	1	0	1	0	1	0	0	0	0	5872	697	25	0	5099	0	FER1L6	8	125113407	Frame_Shift_Del	DEL	C	TCGA-50-5066-01A-01D-1625-08	79536	125113407	21250615	310	131987											
ASAP1	50807	broad.mit.edu	37	chr8	131130904	131130904	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacatactttgcagtgataTattcttttcgtacagtccta	5	9	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131130904	C	C	131130904	3	2	154	1	0	0	0	0	1	0	0	0	1014	1406	49	5	1812	5	ASAP1	8	131130904	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	6017497	131130904	15233118	311	131988											
COL22A1	169044	broad.mit.edu	37	chr8	139890019	139890019	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacggcgccgcagcttgCcccggatcttgtcgatggca	13	13	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139890019	A	A	139890019	3	1	154	1	0	0	0	0	1	0	0	0	3713	739	26	3	4500	3	COL22A1	8	139890019	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	8759115	139890019	6474003	312	131989											
EPPK1	83481	broad.mit.edu	37	chr8	144943470	144943470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccctctcggcctgccCgagctgctcactcagctccc	9	22	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144943470	A	A	144943470	3	1	154	1	0	0	0	0	1	0	0	0	5232	652	23	1	3314	1	EPPK1	8	144943470	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5053451	144943470	1420552	313	131990											
RECQL4	9401	broad.mit.edu	37	chr8	145742189	145742189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggaggaactcaggccCctgagctactgtagactcta	11	12	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145742189	A	A	145742189	1	1	154	0	1	0	0	0	0	0	0	0	13310	638	22	2		2	RECQL4	8	145742189	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	798719	145742189	621833	314	131991											
ZNF16	7564	broad.mit.edu	37	chr8	146157289	146157289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcttttccacattcattaCacatataaggcctctcactg	5	12	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146157289	A	A	146157289	3	1	154	1	0	0	0	0	1	0	0	0	17864	478	17	3	1168	3	ZNF16	8	146157289	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	415100	146157289	206733	315	131992											
C8orf33	65265	broad.mit.edu	37	chr8	146278737	146278737	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaaagaacgcccttgcCccggaagaggcagctgatgc	12	13	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146278737	G	G	146278737	3	3	154	1	0	0	0	0	1	0	0	0	2447	623	22	4	472	4	C8orf33	8	146278737	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	121448	146278737	85285	316	131993											
FREM1	158326	broad.mit.edu	37	chr9	14775758	14775758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcactgttttcacatctctGgcaaatgaactgtgtttttc	7	9	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14775758	T	T	14775758	1	4	154	0	1	0	0	0	0	0	0	0	6104	1363	47	2		2	FREM1	9	14775758	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08		14775758	126437673	317	131994											
TLN1	7094	broad.mit.edu	37	chr9	35697928	35697928	+	Intron	DEL	C	-	-													gatgatctgagggtggagatCggggacttagttcagtgagg							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35697928	-	-	35697928	6	5	154	0	1	1	0	1	0	0	0	0	16070	899	31	0		0	TLN1	9	35697928	Intron	DEL	C	TCGA-50-5066-01A-01D-1625-08	20922170	35697928	105515503	318	131995											
GCNT1	2650	broad.mit.edu	37	chr9	79117888	79117888	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccgggttcaggctgacctCaactgcatgaaggatctcta	11	11	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79117888	G	G	79117888	2	3	154	1	0	0	0	0	0	0	0	1	6362	813	29	4		4	GCNT1	9	79117888	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	43419960	79117888	62095543	319	131996											
GCNT1	2650	broad.mit.edu	37	chr9	79117986	79117986	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaccaacctagaaattgTcaggaagctcaagttgttaa	7	7	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79117986	C	C	79117986	3	2	154	1	0	0	0	0	1	0	0	0	6362	1667	58	5	691	5	GCNT1	9	79117986	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	98	79117986	62095445	320	131997											
VPS13A	23230	broad.mit.edu	37	chr9	79968254	79968254	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttataaatgtgaaatcTaaatttcatgttctttggga	6	4	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79968254	G	G	79968254	1	3	154	0	1	0	0	0	0	0	0	0	17316	1537	53	5		5	VPS13A	9	79968254	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	850268	79968254	61245177	321	131998											
LOC286238	286238	broad.mit.edu	37	chr9	91262377	91262377	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgctggccagccacagggaAgcatgtcccgtgtctgccac	12	15	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91262377	G	G	91262377	3	3	154	1	0	0	0	0	1	0	0	0	8954	72	3	5	76	5	LOC286238	9	91262377	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	11294123	91262377	49951054	322	131999											
FAM120A	23196	broad.mit.edu	37	chr9	96312945	96312945	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcgctgtcccccaaactctAcgagcctgatcagctccagg	10	16	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96312945	T	T	96312945	3	4	154	1	0	0	0	0	1	0	0	0	5461	391	14	5	2292	5	FAM120A	9	96312945	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	5050568	96312945	44900486	323	132000											
MRPL50	54534	broad.mit.edu	37	chr9	104152941	104152941	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagattgaactttagaCgactatcttccagggagatg	10	8	1	5			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104152941	A	A	104152941	3	1	154	1	0	0	0	0	1	0	0	0	9908	536	19	3	196	3	MRPL50	9	104152941	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	7839996	104152941	37060490	324	132001											
RNF20	56254	broad.mit.edu	37	chr9	104309130	104309130	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgcagagtaaagtggagaCagccgaatcacgagtgtctg	14	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104309130	T	T	104309130	3	4	154	1	0	0	0	0	1	0	0	0	13584	478	17	4	798	4	RNF20	9	104309130	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	156189	104309130	36904301	325	132002											
OR13C4	138804	broad.mit.edu	37	chr9	107288584	107288584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattttatagcagcttttaCatctttatttctcaagctat	3	7	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107288584	A	A	107288584	3	1	154	1	0	0	0	0	1	0	0	0	11030	478	17	3	51	3	OR13C4	9	107288584	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2979454	107288584	33924847	326	132003											
ORM1	5004	broad.mit.edu	37	chr9	117086345	117086345	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacctgaatgtccagcgggAaaatgggaccatctccagat	10	11	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117086345	T	T	117086345	3	4	154	1	0	0	0	0	1	0	0	0	11361	246	9	5	315	5	ORM1	9	117086345	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	9797761	117086345	24127086	327	132004											
ORM1	5004	broad.mit.edu	37	chr9	117087493	117087493	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaacttgggcagccccagAggcccagagcaggagagctg	14	14	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117087493	G	G	117087493	1	3	154	0	1	0	0	0	0	0	0	0	11361	319	11	5		5	ORM1	9	117087493	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	1148	117087493	24125938	328	132005											
AKNA	80709	broad.mit.edu	37	chr9	117143439	117143439	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgctgggccaggcggaAgtcctctaggagctcggggc	18	11	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117143439	C	C	117143439	3	2	154	1	0	0	0	0	1	0	0	0	463	72	3	5	4228	5	AKNA	9	117143439	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	55946	117143439	24069992	329	132006											
DBC1	1620	broad.mit.edu	37	chr9	122004412	122004412	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taggatgatgcgagctggtgCagagcttcaacactttgagt	13	7	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122004412	G	G	122004412	2	3	154	1	0	0	0	0	0	0	0	1	4280	697	25	4		4	DBC1	9	122004412	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	4860973	122004412	19209019	330	132007											
LAMC3	10319	broad.mit.edu	37	chr9	133920846	133920846	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattggtccagctgggatacCctggccccgccccttcctgg	11	17	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133920846	T	T	133920846	1	4	154	0	1	0	0	0	0	0	0	0	8688	638	22	4		4	LAMC3	9	133920846	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	11916434	133920846	7292585	331	132008											
ITIH5	80760	broad.mit.edu	37	chr10	7608274	7608274	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataagatctctctggcttgTtgatgaggatggtgatagtg	14	4	2	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7608274	C	C	7608274	3	2	154	1	0	0	0	0	1	0	0	0	7977	1725	60	5	632	5	ITIH5	10	7608274	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08		7608274	127926473	332	132009											
MRC1	4360	broad.mit.edu	37	chr10	17949553	17949553	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttatctgatgaccagggaCgtggctgtggataaataaca	11	6	1	2	rs140695246	byFrequency	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17949553	T	T	17949553	3	4	154	1	0	0	0	0	1	0	0	0	9850	536	19	4	4027	4	MRC1	10	17949553	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	10341279	17949553	117585194	333	132010											
SLC39A12	221074	broad.mit.edu	37	chr10	18254401	18254402	+	Intron	DNP	TC	AA	AA													aattttctctttattttgtaTctgatttcagtgtatggaaa							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18254402	AA	AA	18254401	1	1	154	0	1	0	0	0	0	0	0	0	14729	1450	50	5		5	SLC39A12	10	18254401	Intron	DNP	TC	TCGA-50-5066-01A-01D-1625-08	304848	18254401	117280346	334	132011											
ACBD5	91452	broad.mit.edu	37	chr10	27494124	27494124	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattttttaaaaaatgtctTacctgtgaggtgggctgagg	11	4	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27494124	A	A	27494124	1	1	154	0	1	0	0	0	0	0	0	0	125	1769	61	5		5	ACBD5	10	27494124	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	9239723	27494124	108040623	335	132012											
ZNF488	118738	broad.mit.edu	37	chr10	48371205	48371205	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacttgcaagcattgccaCagaatgctccactctgtagc	9	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48371205	T	T	48371205	4	4	154	1	0	0	0	0	0	1	0	0	18067	479	17	4	675	4	ZNF488	10	48371205	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	20877081	48371205	87163542	336	132013											
PHYHIPL	84457	broad.mit.edu	37	chr10	60994229	60994229	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgacctcaacaagaaagAgaacaagaactccaataaat	5	8	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60994229	G	G	60994229	3	3	154	1	0	0	0	0	1	0	0	0	11962	304	11	5	310	5	PHYHIPL	10	60994229	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	12623024	60994229	74540518	337	132014											
NRG3	10718	broad.mit.edu	37	chr10	84733760	84733760	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggactggcagcatgacttaGgagagacaactgttcttgct	12	8	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84733760	A	A	84733760	1	1	154	0	1	0	0	0	0	0	0	0	10744	1015	35	4		4	NRG3	10	84733760	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	23739531	84733760	50800987	338	132015											
HTR7	3363	broad.mit.edu	37	chr10	92508872	92508872	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggaggaaaaatggcagcCagcacacggtaaaggccccg	14	10	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92508872	A	A	92508872	3	1	154	1	0	0	0	0	1	0	0	0	7522	595	21	2	436	2	HTR7	10	92508872	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	7775112	92508872	43025875	339	132016											
PDE6C	5146	broad.mit.edu	37	chr10	95395390	95395390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactcctgaagaaattaagtCcattttggtaagtgggaaat	9	6	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95395390	A	A	95395390	3	1	154	1	0	0	0	0	1	0	0	0	11741	855	30	3	1444	3	PDE6C	10	95395390	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2886518	95395390	40139357	340	132017											
PI4K2A	55361	broad.mit.edu	37	chr10	99358841	99358841	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctctctccttcctctGgcagccactcaagccacagt	5	19	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99358841	T	T	99358841	1	4	154	0	1	0	0	0	0	0	0	0	11966	1363	47	2		2	PI4K2A	10	99358841	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3963451	99358841	36175906	341	132018											
ADAM12	8038	broad.mit.edu	37	chr10	128018913	128018913	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaacccttgaatgagagaaTaccaaagcagctaatgtgat	8	8	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128018913	C	C	128018913	1	2	154	0	1	0	0	0	0	0	0	0	236	1421	49	5		5	ADAM12	10	128018913	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	28660072	128018913	7515834	342	132019											
RNH1	6050	broad.mit.edu	37	chr11	499889	499889	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagagcagctgcaggcccGcatcccccaagaggttgtcg	13	15	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	499889	A	A	499889	3	1	154	1	0	0	0	0	1	0	0	0	13615	1087	38	4	1030	4	RNH1	11	499889	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08		499889	134506627	343	132020											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1605902	1605902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggagccacaaccccccttgGatcccccacaagaaccgcag	8	19	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1605902	T	T	1605902	3	4	154	1	0	0	0	0	1	0	0	0	8630	1174	41	3	262	3	KRTAP5-1	11	1605902	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1106013	1605902	133400614	344	132021											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651151	1651151	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggggctgtggctccggCtgtggaggctgtggctctgg	21	8	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1651151	T	T	1651151	2	4	154	1	0	0	0	0	0	0	0	1	8636	784	28	4		4	KRTAP5-5	11	1651151	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	45249	1651151	133355365	345	132022											
OR51S1	119692	broad.mit.edu	37	chr11	4870218	4870218	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccaatatcagacacactaAgcaagaagaggaagaagtgc	9	8	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4870218	G	G	4870218	3	3	154	1	0	0	0	0	1	0	0	0	11199	72	3	5	753	5	OR51S1	11	4870218	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	3219067	4870218	130136298	346	132023											
OR51S1	119692	broad.mit.edu	37	chr11	4870358	4870358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagggtgcacctgatagGcctggcatgcccaccagcaa	13	13	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4870358	T	T	4870358	2	4	154	1	0	0	0	0	0	0	0	1	11199	1190	42	3		3	OR51S1	11	4870358	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	140	4870358	130136158	347	132024											
HBE1	3046	broad.mit.edu	37	chr11	5290728	5290728	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcttgtcacagtgcagctCactcagcttagcaaaggcgg	11	12	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5290728	A	A	5290728	4	1	154	1	0	0	0	0	0	1	0	0	7046	835	29	3	180	3	HBE1	11	5290728	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	420370	5290728	129715788	348	132025											
OR52N5	390075	broad.mit.edu	37	chr11	5799626	5799626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtggtggtgcaggtaaggAggtcaatgagggagagagca	20	3	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5799626	T	T	5799626	3	4	154	1	0	0	0	0	1	0	0	0	11224	304	11	5	739	5	OR52N5	11	5799626	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	508898	5799626	129206890	349	132026											
OR52N1	79473	broad.mit.edu	37	chr11	5809935	5809935	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccctgtaatagcaatgcTgtacatggtacacagtggga	11	8	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5809935	A	A	5809935	3	1	154	1	0	0	0	0	1	0	0	0	11221	1580	55	5	853	5	OR52N1	11	5809935	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	10309	5809935	129196581	350	132027											
OR10A6	390093	broad.mit.edu	37	chr11	7949615	7949615	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaggtgcctgtgaatgCatagatttcaaacaaaaacg	8	7	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7949615	G	G	7949615	3	3	154	1	0	0	0	0	1	0	0	0	10988	710	25	4	352	4	OR10A6	11	7949615	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2139680	7949615	127056901	351	132028											
SWAP70	23075	broad.mit.edu	37	chr11	9749781	9749781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctttgcatgattacccCgtgctgccccctgatgctga	8	14	1	3	rs141987102	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9749781	A	A	9749781	1	1	154	0	1	0	0	0	0	0	0	0	15543	667	23	1		1	SWAP70	11	9749781	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1800166	9749781	125256735	352	132029											
SERGEF	26297	broad.mit.edu	37	chr11	18028280	18028280	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttcaggccacaaacaaaGaggtctcctccatctgcaaa	7	12	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18028280	A	A	18028280	2	1	154	1	0	0	0	0	0	0	0	1	14190	929	33	4		4	SERGEF	11	18028280	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	8278499	18028280	116978236	353	132030											
NELL1	4745	broad.mit.edu	37	chr11	20699489	20699489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttccagtggtgggctttGggatggaccctgaccttcag	13	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20699489	T	T	20699489	3	4	154	1	0	0	0	0	1	0	0	0	10428	1348	47	2	73	2	NELL1	11	20699489	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2671209	20699489	114307027	354	132031											
PAX6	5080	broad.mit.edu	37	chr11	31815437	31815437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctgccctccccacgccCatggcagcagagcatttagc	9	17	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31815437	A	A	31815437	1	1	154	0	1	0	0	0	0	0	0	0	11577	609	21	2		2	PAX6	11	31815437	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	11115948	31815437	103191079	355	132032											
TRIM48	79097	broad.mit.edu	37	chr11	55035146	55035146	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatgtggtttcaggtttttGactattcacatgtataagta	8	5	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55035146	C	C	55035146	1	2	154	0	1	0	0	0	0	0	0	0	16648	1305	45	4		4	TRIM48	11	55035146	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	23219709	55035146	79971370	356	132033											
OR4C15	81309	broad.mit.edu	37	chr11	55322518	55322518	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcttgcctgcactgatactCacatctttggcctcatggtg	9	12	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55322518	A	A	55322518	3	1	154	1	0	0	0	0	1	0	0	0	11142	826	29	3	738	3	OR4C15	11	55322518	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	287372	55322518	79683998	357	132034											
OR4C16	219428	broad.mit.edu	37	chr11	55339950	55339950	+	Frame_Shift_Del	DEL	C	-	-													gatcttcatcctcatcctcaCggctgttgaccgctatgtgg							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55339950	-	-	55339950	7	5	154	1	0	1	0	1	0	0	0	0	11143	536	19	0	349	0	OR4C16	11	55339950	Frame_Shift_Del	DEL	C	TCGA-50-5066-01A-01D-1625-08	17432	55339950	79666566	358	132035											
OR5T3	390154	broad.mit.edu	37	chr11	56020314	56020314	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttttgtgatatgcctccTctccttgctatttcttgttc	6	11	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020314	A	A	56020314	2	1	154	1	0	0	0	0	0	0	0	1	11277	1538	54	5		5	OR5T3	11	56020314	Silent	SNP	T	TCGA-50-5066-01A-01D-1625-08	680364	56020314	78986202	359	132036											
OR4D10	390197	broad.mit.edu	37	chr11	59245659	59245659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgaccctgcatttcgtgCcctgcatctatgtctatgcc	9	13	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59245659	A	A	59245659	3	1	154	1	0	0	0	0	1	0	0	0	11148	739	26	3	759	3	OR4D10	11	59245659	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3225345	59245659	75760857	360	132037											
MS4A3	932	broad.mit.edu	37	chr11	59828639	59828639	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccataaacaaccccaatggcCtcccacgaagttgataatgc	6	14	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59828639	T	T	59828639	2	4	154	1	0	0	0	0	0	0	0	1	9955	668	24	4		4	MS4A3	11	59828639	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	582980	59828639	75177877	361	132038											
MS4A2	2206	broad.mit.edu	37	chr11	59857105	59857105	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcccctttctgtctgtcgaGaatgttgcacagggagttac	10	11	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59857105	A	A	59857105	1	1	154	0	1	0	0	0	0	0	0	0	9954	957	33	4		4	MS4A2	11	59857105	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	28466	59857105	75149411	362	132039											
MS4A2	2206	broad.mit.edu	37	chr11	59857726	59857726	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacactaacgcagtttctcAtgtttggcttctattattaa	7	8	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59857726	T	T	59857726	1	4	154	0	1	0	0	0	0	0	0	0	9954	232	8	5		5	MS4A2	11	59857726	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	621	59857726	75148790	363	132040											
INCENP	3619	broad.mit.edu	37	chr11	61897387	61897387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgacccgtgctgcggctGcagctgccgcggctaccatg	15	14	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61897387	T	T	61897387	3	4	154	1	0	0	0	0	1	0	0	0	7803	1319	46	3	398	3	INCENP	11	61897387	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2039661	61897387	73109129	364	132041											
RTN3	10313	broad.mit.edu	37	chr11	63488495	63488495	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctagcaagacttctgacaGacttctcaggtaaccattta	6	11	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63488495	C	C	63488495	3	2	154	1	0	0	0	0	1	0	0	0	13838	942	33	4	2531	4	RTN3	11	63488495	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1591108	63488495	71518021	365	132042											
FRMD8	83786	broad.mit.edu	37	chr11	65161533	65161533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagcctttcctgcagttccGaaggaacgtgttcttcccaa	9	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65161533	A	A	65161533	3	1	154	1	0	0	0	0	1	0	0	0	6116	1058	37	4	391	4	FRMD8	11	65161533	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1673038	65161533	69844983	366	132043											
MTL5	9633	broad.mit.edu	37	chr11	68480731	68480731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgagttagggagctgggCactaacctcatagcactcgc	12	10	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68480731	A	A	68480731	1	1	154	0	1	0	0	0	0	0	0	0	10030	725	25	3		3	MTL5	11	68480731	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	3319198	68480731	66525785	367	132044											
DLG2	1740	broad.mit.edu	37	chr11	83252726	83252726	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacaaaaggcattcttaccTccttttgctggggatgaccc	9	11	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83252726	A	A	83252726	3	1	154	1	0	0	0	0	1	0	0	0	4595	1565	54	5	897	5	DLG2	11	83252726	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	14771995	83252726	51753790	368	132045											
NAALAD2	10003	broad.mit.edu	37	chr11	89883723	89883723	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagagatgggcatcaactGtactgggaagattgttattg	13	4	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89883723	C	C	89883723	3	2	154	1	0	0	0	0	1	0	0	0	10222	1377	48	4	575	4	NAALAD2	11	89883723	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	6630997	89883723	45122793	369	132046											
MMP20	9313	broad.mit.edu	37	chr11	102464128	102464128	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatctttttaaaatcattcTcattaaataaagatagatag	3	4	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102464128	A	A	102464128	1	1	154	0	1	0	0	0	0	0	0	0	9752	1566	54	5		5	MMP20	11	102464128	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	12580405	102464128	32542388	370	132047											
MMP8	4317	broad.mit.edu	37	chr11	102592296	102592296	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattagatccttgccaagttTcaggttagccaaagaaagca	8	8	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102592296	A	A	102592296	1	1	154	0	1	0	0	0	0	0	0	0	9762	1798	62	5		5	MMP8	11	102592296	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	128168	102592296	32414220	371	132048											
CASP5	838	broad.mit.edu	37	chr11	104877974	104877974	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaatgtcagaacatcgTgttttgccaaataattaaaa	5	8	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104877974	A	A	104877974	3	1	154	1	0	0	0	0	1	0	0	0	2700	1696	59	5	1063	5	CASP5	11	104877974	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	2285678	104877974	30128542	372	132049											
GRIA4	2893	broad.mit.edu	37	chr11	105797526	105797526	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttacactcatcattatatCatcttatactgctaacctcg	2	12	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105797526	T	T	105797526	3	4	154	1	0	0	0	0	1	0	0	0	6836	838	29	4	1990	4	GRIA4	11	105797526	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	919552	105797526	29208990	373	132050											
ARHGAP20	57569	broad.mit.edu	37	chr11	110561279	110561279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcacttacctggtagtaGgccgtttttgtagggcttta	11	7	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110561279	T	T	110561279	3	4	154	1	0	0	0	0	1	0	0	0	872	1000	35	2	3452	2	ARHGAP20	11	110561279	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	4763753	110561279	24445237	374	132051											
DSCAML1	57453	broad.mit.edu	37	chr11	117403175	117403175	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcgataggtggagagggCgtcctccttctgtacgtcag	15	10	2	1	rs142110596		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117403175	G	G	117403175	3	3	154	1	0	0	0	0	1	0	0	0	4809	768	27	4	5707	4	DSCAML1	11	117403175	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	6841896	117403175	17603341	375	132052											
ARHGEF12	23365	broad.mit.edu	37	chr11	120351059	120351059	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacttttttgatgcccgtgAagcacatagtgatgagaatc	10	8	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120351059	G	G	120351059	3	3	154	1	0	0	0	0	1	0	0	0	899	246	9	5	4307	5	ARHGEF12	11	120351059	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	2947884	120351059	14655457	376	132053											
GRIK4	2900	broad.mit.edu	37	chr11	120707586	120707586	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacagctcacctccttggaaGagagtgttgtcagtggtcag	12	10	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120707586	C	C	120707586	1	2	154	0	1	0	0	0	0	0	0	0	6842	957	33	4		4	GRIK4	11	120707586	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	356527	120707586	14298930	377	132054											
SORL1	6653	broad.mit.edu	37	chr11	121444861	121444861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaatacctgctttcttctAttttttaattggttttccag	4	7	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121444861	G	G	121444861	1	3	154	0	1	0	0	0	0	0	0	0	15048	464	16	5		5	SORL1	11	121444861	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	737275	121444861	13561655	378	132055											
SNX19	399979	broad.mit.edu	37	chr11	130748486	130748486	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacttagggtctggctcAatcaggaaacacaagatcct	8	9	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130748486	T	T	130748486	1	4	154	0	1	0	0	0	0	0	0	0	15004	145	5	5		5	SNX19	11	130748486	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	9303625	130748486	4258030	379	132056											
CACNA2D4	93589	broad.mit.edu	37	chr12	1919407	1919407	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtctccagtcctcctgccGccctctccccctcattctat	4	20	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1919407	A	A	1919407	1	1	154	0	1	0	0	0	0	0	0	0	2577	1102	38	4		4	CACNA2D4	12	1919407	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08		1919407	131932488	380	132057											
NCAPD2	9918	broad.mit.edu	37	chr12	6618789	6618789	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttttttgtgattctaccaAtaaaagcaataaacctagtt	4	7	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6618789	T	T	6618789	1	4	154	0	1	0	0	0	0	0	0	0	10300	116	4	5		5	NCAPD2	12	6618789	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	4699382	6618789	127233106	381	132058											
C1R	715	broad.mit.edu	37	chr12	7188193	7188193	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacatagcccatcaagccCaggtcgtagaaggtatcgtt	10	11	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7188193	A	A	7188193	2	1	154	1	0	0	0	0	0	0	0	1	1992	581	21	2		2	C1R	12	7188193	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	569404	7188193	126663702	382	132059											
CLEC4E	26253	broad.mit.edu	37	chr12	8693515	8693515	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaatcttgaaagataaaCactttgtcttttaggaagtt	7	4	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8693515	A	A	8693515	1	1	154	0	1	0	0	0	0	0	0	0	3547	493	17	3		3	CLEC4E	12	8693515	5'UTR	SNP	C	TCGA-50-5066-01A-01D-1625-08	1505322	8693515	125158380	383	132060											
BCL2L14	79370	broad.mit.edu	37	chr12	12247496	12247496	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaccagcatccagggttttCcacaggatggtttgatggcc	11	11	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12247496	T	T	12247496	1	4	154	0	1	0	0	0	0	0	0	0	1377	855	30	4		4	BCL2L14	12	12247496	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	3553981	12247496	121604399	384	132061											
ABCC9	10060	broad.mit.edu	37	chr12	22068699	22068699	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcagatcaataggctttTtgtgagcagatataataagt	8	6	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22068699	C	C	22068699	3	2	154	1	0	0	0	0	1	0	0	0	59	1841	64	5	4208	5	ABCC9	12	22068699	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	9821203	22068699	111783196	385	132062											
ST8SIA1	6489	broad.mit.edu	37	chr12	22354578	22354578	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataccagagttggagaaattCctcgggcatggcatggaagc	13	8	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22354578	A	A	22354578	4	1	154	1	0	0	0	0	0	1	0	0	15349	864	30	3	95	3	ST8SIA1	12	22354578	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	285879	22354578	111497317	386	132063											
PPFIBP1	8496	broad.mit.edu	37	chr12	27746978	27746978	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaatatgccatggagtTcaaaggcacaaatctctctc	9	9	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27746978	A	A	27746978	1	1	154	0	1	0	0	0	0	0	0	0	12409	1798	62	5		5	PPFIBP1	12	27746978	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	5392400	27746978	106104917	387	132064											
OVCH1	341350	broad.mit.edu	37	chr12	29596311	29596311	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctattaatttttttcctGgtccaaatccttcgtaaaca	3	10	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29596311	T	T	29596311	3	4	154	1	0	0	0	0	1	0	0	0	11417	1348	47	2	280	2	OVCH1	12	29596311	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1849333	29596311	104255584	388	132065											
OVCH1	341350	broad.mit.edu	37	chr12	29596369	29596369	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaaaagttgttggcttcaTcgggaagttaataatattaa	9	4	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29596369	G	G	29596369	3	3	154	1	0	0	0	0	1	0	0	0	11417	1435	50	5	338	5	OVCH1	12	29596369	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	58	29596369	104255526	389	132066											
OVCH1	341350	broad.mit.edu	37	chr12	29630272	29630272	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaaatacctgaaacactcAcctgcttctgacttctgtac	4	12	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29630272	T	T	29630272	5	4	154	1	0	0	0	0	0	0	1	0	11417	173	6	5	2228	5	OVCH1	12	29630272	Splice_Site	SNP	A	TCGA-50-5066-01A-01D-1625-08	33903	29630272	104221623	390	132067											
FGD4	121512	broad.mit.edu	37	chr12	32764282	32764282	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatggctgggcacggtgGctcatgcctgtaatcccagc	12	11	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32764282	T	T	32764282	1	4	154	0	1	0	0	0	0	0	0	0	5892	1218	42	3		3	FGD4	12	32764282	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3134010	32764282	101087613	391	132068											
PKP2	5318	broad.mit.edu	37	chr12	33049567	33049567	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttcagcttggcctcggaGggcagcgccaggctggagct	16	12	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33049567	T	T	33049567	2	4	154	1	0	0	0	0	0	0	0	1	12080	987	35	2		2	PKP2	12	33049567	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	285285	33049567	100802328	392	132069											
COL2A1	1280	broad.mit.edu	37	chr12	48369172	48369172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttgcgggagccctcggGgctgcggatgctctcaatct	14	12	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48369172	T	T	48369172	3	4	154	1	0	0	0	0	1	0	0	0	3719	1232	43	2	665	2	COL2A1	12	48369172	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	15319605	48369172	85482723	393	132070											
KRT83	3889	broad.mit.edu	37	chr12	52708940	52708940	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctgtgaggttcttcctgcGagctaacctcagtctgtctt	11	11	4	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52708940	T	T	52708940	1	4	154	0	1	0	0	0	0	0	0	0	8568	1073	37	3		3	KRT83	12	52708940	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	4339768	52708940	81142955	394	132071											
ITGA5	3678	broad.mit.edu	37	chr12	54795926	54795926	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttggtgtcccctctagaggGgtatcctcccaaatcccact	8	14	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54795926	A	A	54795926	1	1	154	0	1	0	0	0	0	0	0	0	7949	1247	43	4		4	ITGA5	12	54795926	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	2086986	54795926	79055969	395	132072											
TIMELESS	8914	broad.mit.edu	37	chr12	56827699	56827699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctcaaatagcggatcagatCcttcacgctctcttcagaga	7	13	5	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56827699	A	A	56827699	3	1	154	1	0	0	0	0	1	0	0	0	16027	855	30	3	3625	3	TIMELESS	12	56827699	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2031773	56827699	77024196	396	132073											
PTPRB	5787	broad.mit.edu	37	chr12	70949913	70949913	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggccggcaatgcaggtttTgtatcttgtcaggctctaaa	12	8	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70949913	C	C	70949913	3	2	154	1	0	0	0	0	1	0	0	0	12904	1812	63	5	1981	5	PTPRB	12	70949913	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	14122214	70949913	62901982	397	132074											
PTPRR	5801	broad.mit.edu	37	chr12	71314018	71314018	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttttacctttttagaaaggCtttcttcgcaaggcaagctt	8	8	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71314018	G	G	71314018	1	3	154	0	1	0	0	0	0	0	0	0	12918	812	28	4		4	PTPRR	12	71314018	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	364105	71314018	62537877	398	132075											
LRRIQ1	84125	broad.mit.edu	37	chr12	85459121	85459121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatcttcagtttctatccCttcgacgctgtggattaact	6	11	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85459121	T	T	85459121	3	4	154	1	0	0	0	0	1	0	0	0	9116	681	24	4	2503	4	LRRIQ1	12	85459121	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	14145103	85459121	48392774	399	132076											
CRADD	8738	broad.mit.edu	37	chr12	94072872	94072872	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcctcagaaagatcactttGaaccagctccaaaatgttgt	8	10	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94072872	C	C	94072872	1	2	154	0	1	0	0	0	0	0	0	0	3877	1305	45	4		4	CRADD	12	94072872	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	8613751	94072872	39779023	400	132077											
ANKS1B	56899	broad.mit.edu	37	chr12	99837486	99837486	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttacaatatttttgagggCagtatcaggggatggaggtg	14	3	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99837486	G	G	99837486	3	3	154	1	0	0	0	0	1	0	0	0	689	710	25	4	2558	4	ANKS1B	12	99837486	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5764614	99837486	34014409	401	132078											
GNPTAB	79158	broad.mit.edu	37	chr12	102164889	102164889	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcttgaaaatccttggggTtattcagttttagaagcgct	9	6	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102164889	A	A	102164889	3	1	154	1	0	0	0	0	1	0	0	0	6609	1725	60	5	3008	5	GNPTAB	12	102164889	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	2327403	102164889	31687006	402	132079											
STAB2	55576	broad.mit.edu	37	chr12	103988241	103988241	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatatttgtaggaaggactAtctccaacctcggtgttgtc	9	10	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103988241	G	G	103988241	3	3	154	1	0	0	0	0	1	0	0	0	15356	449	16	5	294	5	STAB2	12	103988241	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	1823352	103988241	29863654	403	132080											
SSH1	54434	broad.mit.edu	37	chr12	109192760	109192760	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgcctgccaacccttctctCcaggcaggcacccaccttgc	7	21	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109192760	A	A	109192760	1	1	154	0	1	0	0	0	0	0	0	0	15302	870	30	3		3	SSH1	12	109192760	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5204519	109192760	24659135	404	132081											
ACACB	32	broad.mit.edu	37	chr12	109694035	109694035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagaccgtggtgacaggacGagcaaggtaatcatgaagac	14	8	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109694035	T	T	109694035	3	4	154	1	0	0	0	0	1	0	0	0	107	1058	37	3	6431	3	ACACB	12	109694035	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	501275	109694035	24157860	405	132082											
TBX5	6910	broad.mit.edu	37	chr12	114841492	114841492	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtccccgcaagagaagccGagcaggaaagccagactctg	12	13	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114841492	A	A	114841492	1	1	154	0	1	0	0	0	0	0	0	0	15783	1073	37	4		4	TBX5	12	114841492	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	5147457	114841492	19010403	406	132083											
STX2	2054	broad.mit.edu	37	chr12	131311793	131311793	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caaccacaacaactgtgtctCcatcatcattcttcctacac	2	16	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131311793	G	G	131311793	3	3	154	1	0	0	0	0	1	0	0	0	15463	855	30	4	934	4	STX2	12	131311793	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	16470301	131311793	2540102	407	132084											
GOLGA3	2802	broad.mit.edu	37	chr12	133375049	133375049	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccaggagacctgcctgGgtcatctgtccaaccttaaa	9	13	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133375049	T	T	133375049	2	4	154	1	0	0	0	0	0	0	0	1	6618	1219	43	2		2	GOLGA3	12	133375049	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	2063256	133375049	476846	408	132085											
SUCLA2	8803	broad.mit.edu	37	chr13	48523484	48523484	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaatgttttaaaaactaTagttttaatttcatattgta	3	2	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48523484	C	C	48523484	1	2	154	0	1	0	0	0	0	0	0	0	15481	1421	49	5		5	SUCLA2	13	48523484	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08		48523484	66646394	409	132086											
VPS36	51028	broad.mit.edu	37	chr13	53010452	53010452	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggccatgttctttgaaggaGagtttgatgtaggagttctt	13	4	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53010452	C	C	53010452	2	2	154	1	0	0	0	0	0	0	0	1	17331	929	33	4		4	VPS36	13	53010452	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	4486968	53010452	62159426	410	132087											
PCDH17	27253	broad.mit.edu	37	chr13	58240668	58240668	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttgttcaaaggtaaggcCtattaaataacttttctcag	7	6	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58240668	G	G	58240668	1	3	154	0	1	0	0	0	0	0	0	0	11606	696	24	4		4	PCDH17	13	58240668	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5230216	58240668	56929210	411	132088											
KLHL1	57626	broad.mit.edu	37	chr13	70293474	70293474	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatttgcactgtctctttcGctgtaacagtgtccttgggg	11	9	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70293474	C	C	70293474	1	2	154	0	1	0	0	0	0	0	0	0	8436	1102	38	4		4	KLHL1	13	70293474	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	12052806	70293474	44876404	412	132089											
GPC5	2262	broad.mit.edu	37	chr13	93518549	93518549	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacagggatgccagatgatAtgaacttcagtgatgtaaag	11	6	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93518549	T	T	93518549	3	4	154	1	0	0	0	0	1	0	0	0	6666	449	16	5	1606	5	GPC5	13	93518549	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	23225075	93518549	21651329	413	132090											
TTC5	91875	broad.mit.edu	37	chr14	20774142	20774142	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataaccacagagacgcacgCcctctctcaccgcggaacca	7	17	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20774142	A	A	20774142	1	1	154	0	1	0	0	0	0	0	0	0	16837	754	26	3		3	TTC5	14	20774142	5'UTR	SNP	C	TCGA-50-5066-01A-01D-1625-08		20774142	86575398	414	132091											
CCNB1IP1	57820	broad.mit.edu	37	chr14	20784496	20784496	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatggactgagttctgtgcGgacaatatctagctttccag	11	8	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20784496	A	A	20784496	3	1	154	1	0	0	0	0	1	0	0	0	2942	1116	39	4	658	4	CCNB1IP1	14	20784496	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	10354	20784496	86565044	415	132092											
HAUS4	54930	broad.mit.edu	37	chr14	23416971	23416971	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatggaggaagaagagggcaTaaataaagatagtagaaagg	15	1	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23416971	A	A	23416971	1	1	154	0	1	0	0	0	0	0	0	0	7034	1421	49	5		5	HAUS4	14	23416971	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	2632475	23416971	83932569	416	132093											
KIAA0391	9692	broad.mit.edu	37	chr14	35593129	35593129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgatccattcagacagatgGagagaagcattgttgctgtt	11	6	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35593129	T	T	35593129	3	4	154	1	0	0	0	0	1	0	0	0	8242	1183	41	3	680	3	KIAA0391	14	35593129	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	12176158	35593129	71756411	417	132094											
CLEC14A	161198	broad.mit.edu	37	chr14	38723908	38723908	+	Frame_Shift_Del	DEL	C	-	-													ggatcactctccaggcccggCgggcccatagactccttcct							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38723908	-	-	38723908	7	5	154	1	0	1	0	1	0	0	0	0	3531	755	27	0	156	0	CLEC14A	14	38723908	Frame_Shift_Del	DEL	C	TCGA-50-5066-01A-01D-1625-08	3130779	38723908	68625632	418	132095											
PNN	5411	broad.mit.edu	37	chr14	39650219	39650219	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggaatttgaaattgagccaGataaagaatgtaaaaccctt	8	5	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39650219	C	C	39650219	3	2	154	1	0	0	0	0	1	0	0	0	12255	942	33	4	1340	4	PNN	14	39650219	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	926311	39650219	67699321	419	132096											
LRFN5	145581	broad.mit.edu	37	chr14	42368149	42368149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactaatgttgaccagattGtccaggaaacacaggtgaga	11	7	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42368149	T	T	42368149	3	4	154	1	0	0	0	0	1	0	0	0	9028	1377	48	3	2138	3	LRFN5	14	42368149	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2717930	42368149	64981391	420	132097											
NIN	51199	broad.mit.edu	37	chr14	51192620	51192620	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaagggatgtaaaactggaGttaaagctggaatgtgaggt	14	2	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51192620	A	A	51192620	2	1	154	1	0	0	0	0	0	0	0	1	10512	1020	36	4		4	NIN	14	51192620	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	8824471	51192620	56156920	421	132098											
NID2	22795	broad.mit.edu	37	chr14	52508881	52508881	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaaagagccagccaaaCaggcctccaattggtgtgag	11	10	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52508881	A	A	52508881	2	1	154	1	0	0	0	0	0	0	0	1	10510	465	17	3		3	NID2	14	52508881	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	1316261	52508881	54840659	422	132099											
DACT1	51339	broad.mit.edu	37	chr14	59112816	59112816	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaaaagagagtcctagcaGaggccctgccccgccgcagg	12	15	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59112816	A	A	59112816	3	1	154	1	0	0	0	0	1	0	0	0	4255	942	33	4	1489	4	DACT1	14	59112816	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	6603935	59112816	48236724	423	132100											
C14orf39	317761	broad.mit.edu	37	chr14	60903630	60903630	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttaaagaagaagaaggtAttgaattttgaccctgtcca	8	6	0	5			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60903630	G	G	60903630	3	3	154	1	0	0	0	0	1	0	0	0	1785	449	16	5	70	5	C14orf39	14	60903630	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	1790814	60903630	46445910	424	132101											
SIX4	51804	broad.mit.edu	37	chr14	61180433	61180433	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaagggcagcctgagtcaTagggactgacaataggtctt	12	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61180433	C	C	61180433	3	2	154	1	0	0	0	0	1	0	0	0	14462	1406	49	5	311	5	SIX4	14	61180433	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	276803	61180433	46169107	425	132102											
PLEKHG3	26030	broad.mit.edu	37	chr14	65194383	65194383	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccctccaccaggatggcAgccaggagcggccggtgagc	14	16	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65194383	G	G	65194383	3	3	154	1	0	0	0	0	1	0	0	0	12165	188	7	5	36	5	PLEKHG3	14	65194383	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	4013950	65194383	42155157	426	132103											
PLEKHH1	57475	broad.mit.edu	37	chr14	68028658	68028658	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcctaaatcttcattttTctttttgctcagcttgagat	6	8	4	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68028658	C	C	68028658	1	2	154	0	1	0	0	0	0	0	0	0	12171	1798	62	5		5	PLEKHH1	14	68028658	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	2834275	68028658	39320882	427	132104											
MAP3K9	4293	broad.mit.edu	37	chr14	71197312	71197312	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctactgctagcaaagcaggAgtccaggttgctgggcgtct	14	10	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71197312	T	T	71197312	3	4	154	1	0	0	0	0	1	0	0	0	9349	304	11	5	218	5	MAP3K9	14	71197312	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	3168654	71197312	36152228	428	132105											
SIPA1L1	26037	broad.mit.edu	37	chr14	72191385	72191385	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcttcccttttttgtccAggcgtcatcagagcgatggc	9	12	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72191385	C	C	72191385	5	2	154	1	0	0	0	0	0	0	1	0	14442	202	7	5	4572	5	SIPA1L1	14	72191385	Splice_Site	SNP	A	TCGA-50-5066-01A-01D-1625-08	994073	72191385	35158155	429	132106											
RGS6	9628	broad.mit.edu	37	chr14	72977046	72977046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaaatttgcataatcGgtctctccatctctctctct	6	11	4	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72977046	A	A	72977046	1	1	154	0	1	0	0	0	0	0	0	0	13418	1131	39	4		4	RGS6	14	72977046	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	785661	72977046	34372494	430	132107											
ABCD4	5826	broad.mit.edu	37	chr14	74759024	74759024	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgctctcgcccaggatctCgcagtcctgtgacttcaggg	11	15	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74759024	A	A	74759024	4	1	154	1	0	0	0	0	0	1	0	0	63	893	31	3	772	3	ABCD4	14	74759024	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1781978	74759024	32590516	431	132108											
NRXN3	9369	broad.mit.edu	37	chr14	79175640	79175640	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaagatgaaaatctatggCgaagttgtgtttaagtgtga	11	4	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79175640	A	A	79175640	2	1	154	1	0	0	0	0	0	0	0	1	10762	755	27	3		3	NRXN3	14	79175640	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	4416616	79175640	28173900	432	132109											
PTPN21	11099	broad.mit.edu	37	chr14	88945231	88945231	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagggcgaacgcgcggtcCcctggcccggcactgctcgc	15	18	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88945231	T	T	88945231	1	4	154	0	1	0	0	0	0	0	0	0	12894	638	22	4		4	PTPN21	14	88945231	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	9769591	88945231	18404309	433	132110											
EML5	161436	broad.mit.edu	37	chr14	89154817	89154817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccaatcaatcctcccCctagttcacaaaaaatatta	1	13	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89154817	A	A	89154817	3	1	154	1	0	0	0	0	1	0	0	0	5142	637	22	2	3497	2	EML5	14	89154817	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	209586	89154817	18194723	434	132111											
TDP1	55775	broad.mit.edu	37	chr14	90437534	90437534	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaggaagaagccaatcctGcttgtgcatggtgataagcg	12	7	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90437534	T	T	90437534	2	4	154	1	0	0	0	0	0	0	0	1	15850	1306	46	3		3	TDP1	14	90437534	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	1282717	90437534	16912006	435	132112											
CALM1	801	broad.mit.edu	37	chr14	90870298	90870298	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatccgtgaggcattcCgagtctttgacaaggtaatc	10	8	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90870298	T	T	90870298	4	4	154	1	0	0	0	0	0	1	0	0	2610	644	23	4	285	4	CALM1	14	90870298	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	432764	90870298	16479242	436	132113											
SERPINA3	12	broad.mit.edu	37	chr14	95080889	95080889	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggagaatctgacccaggaGaaccaagaccgagggacaca	13	10	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95080889	T	T	95080889	3	4	154	1	0	0	0	0	1	0	0	0	14203	933	33	3	113	3	SERPINA3	14	95080889	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	4210591	95080889	12268651	437	132114											
EML1	2009	broad.mit.edu	37	chr14	100402407	100402407	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcacatgacaactgcatcTatatatatggcgttagtgac	8	9	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100402407	A	A	100402407	3	1	154	1	0	0	0	0	1	0	0	0	5138	1522	53	5	2082	5	EML1	14	100402407	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	5321518	100402407	6947133	438	132115											
AHNAK2	113146	broad.mit.edu	37	chr14	105412931	105412931	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcaccatccagctttgCtctcggggcctcgacgtcca	10	17	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105412931	G	G	105412931	3	3	154	1	0	0	0	0	1	0	0	0	415	797	28	4	8534	4	AHNAK2	14	105412931	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5010524	105412931	1936609	439	132116											
TUBGCP5	114791	broad.mit.edu	37	chr15	22836197	22836197	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaattatgagatctccActgtgtattttactgtttcc	5	10	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22836197	G	G	22836197	1	3	154	0	1	0	0	0	0	0	0	0	16895	174	6	5		5	TUBGCP5	15	22836197	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08		22836197	79695195	440	132117											
C15orf2	23742	broad.mit.edu	37	chr15	24921270	24921270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcccctctgggggtcctgCcggctgtgggttgggggctg	19	13	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921270	A	A	24921270	3	1	154	1	0	0	0	0	1	0	0	0	1797	739	26	3	258	3	C15orf2	15	24921270	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2085073	24921270	77610122	441	132118											
OCA2	4948	broad.mit.edu	37	chr15	28090154	28090154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgctgttctgcaatccCtgcacacacgacgtttgccg	8	15	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28090154	A	A	28090154	3	1	154	1	0	0	0	0	1	0	0	0	10910	681	24	2	141	2	OCA2	15	28090154	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3168884	28090154	74441238	442	132119											
SLC12A6	9990	broad.mit.edu	37	chr15	34528982	34528982	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttccatcatcaaagtgCgctcgtaagtatatgctgat	8	8	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34528982	T	T	34528982	3	4	154	1	0	0	0	0	1	0	0	0	14500	768	27	4	499	4	SLC12A6	15	34528982	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	6438828	34528982	68002410	443	132120											
FSIP1	161835	broad.mit.edu	37	chr15	40031846	40031846	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagccccaaattctggcttCtgaatttctaagtacatacc	5	11	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40031846	A	A	40031846	1	1	154	0	1	0	0	0	0	0	0	0	6134	928	32	3		3	FSIP1	15	40031846	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5502864	40031846	62499546	444	132121											
RHOV	171177	broad.mit.edu	37	chr15	41165847	41165847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcctccagcccatctccCcgcagaccagtagaggccgc	9	20	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41165847	A	A	41165847	1	1	154	0	1	0	0	0	0	0	0	0	13455	638	22	2		2	RHOV	15	41165847	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1134001	41165847	61365545	445	132122											
MYO5A	4644	broad.mit.edu	37	chr15	52720687	52720687	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatagctgagggctgtgaggTcattttcaccaacaagtatg	12	7	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52720687	A	A	52720687	3	1	154	1	0	0	0	0	1	0	0	0	10172	1667	58	5	5505	5	MYO5A	15	52720687	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	11554840	52720687	49810705	446	132123											
PRTG	283659	broad.mit.edu	37	chr15	55970202	55970202	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagccatgcactgataaaTagcatcatcttcaggaataa	6	10	4	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55970202	C	C	55970202	3	2	154	1	0	0	0	0	1	0	0	0	12744	1406	49	5	2330	5	PRTG	15	55970202	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	3249515	55970202	46561190	447	132124											
VPS13C	54832	broad.mit.edu	37	chr15	62292765	62292765	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctaataaaaatgattacctCaacttgtgcttgttgccttg	7	8	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62292765	A	A	62292765	4	1	154	1	0	0	0	0	0	1	0	0	17318	835	29	3	10218	3	VPS13C	15	62292765	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	6322563	62292765	40238627	448	132125											
RBPMS2	348093	broad.mit.edu	37	chr15	65042711	65042711	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgtcaacatcaacccAccctgacctccgccactgcc	4	22	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65042711	T	T	65042711	1	4	154	0	1	0	0	0	0	0	0	0	13272	174	6	5		5	RBPMS2	15	65042711	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	2749946	65042711	37488681	449	132126											
STRA6	64220	broad.mit.edu	37	chr15	74472400	74472400	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcagcacagatgggcagGtgggttgaccttccctgccc	13	14	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74472400	T	T	74472400	1	4	154	0	1	0	0	0	0	0	0	0	15440	1276	44	3		3	STRA6	15	74472400	3'UTR	SNP	G	TCGA-50-5066-01A-01D-1625-08	9429689	74472400	28058992	450	132127											
CSPG4	1464	broad.mit.edu	37	chr15	75982567	75982567	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcatggggctgcccatcgGccacaggcacactgttgtgg	13	14	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75982567	A	A	75982567	3	1	154	1	0	0	0	0	1	0	0	0	3994	1203	42	4	6161	4	CSPG4	15	75982567	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1510167	75982567	26548825	451	132128											
ARNT2	9915	broad.mit.edu	37	chr15	80889556	80889556	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgaatggtggtctcccCactcccggcagcactttagg	12	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80889556	A	A	80889556	1	1	154	0	1	0	0	0	0	0	0	0	970	609	21	2		2	ARNT2	15	80889556	3'UTR	SNP	C	TCGA-50-5066-01A-01D-1625-08	4906989	80889556	21641836	452	132129											
MEF2A	4205	broad.mit.edu	37	chr15	100250868	100250868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccagcgctgacctgtcaGcccttcaaggcttcaactcg	9	15	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100250868	T	T	100250868	3	4	154	1	0	0	0	0	1	0	0	0	9548	971	34	3	1215	3	MEF2A	15	100250868	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	19361312	100250868	2280524	453	132130											
ADAMTS17	170691	broad.mit.edu	37	chr15	100649235	100649235	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagatcagtctcgtagggccCgcagggtgtaccgtccagga	15	11	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100649235	G	G	100649235	3	3	154	1	0	0	0	0	1	0	0	0	262	652	23	4	1348	4	ADAMTS17	15	100649235	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	398367	100649235	1882157	454	132131											
RHOT2	89941	broad.mit.edu	37	chr16	723512	723512	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcagagctgcatccctcttCcttctggctccgggggctgc	12	16	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	723512	T	T	723512	3	4	154	1	0	0	0	0	1	0	0	0	13453	855	30	4	1837	4	RHOT2	16	723512	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08		723512	89631241	455	132132											
CORO7	79585	broad.mit.edu	37	chr16	4408223	4408223	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccagcctggggcttccatGagtttcagcatctcagcaga	10	13	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4408223	A	A	4408223	1	1	154	0	1	0	0	0	0	0	0	0	3791	1305	45	4		4	CORO7	16	4408223	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3684711	4408223	85946530	456	132133											
MYH11	4629	broad.mit.edu	37	chr16	15854300	15854301	+	Intron	DNP	GG	TT	TT													gaggcagaccatgggtgaatGgattaatgaatacatgaatg							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	15854301	TT	TT	15854300	1	4	154	0	1	0	0	0	0	0	0	0	10125	1363	47	2		2	MYH11	16	15854300	Intron	DNP	GG	TCGA-50-5066-01A-01D-1625-08	11446077	15854300	74500453	457	132134											
PDILT	204474	broad.mit.edu	37	chr16	20376593	20376593	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattgttcctgatagcatcTtgagtcaatccctttgggta	9	9	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20376593	G	G	20376593	1	3	154	0	1	0	0	0	0	0	0	0	11768	1624	56	5		5	PDILT	16	20376593	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	4522293	20376593	69978160	458	132135											
RBBP6	5930	broad.mit.edu	37	chr16	24583167	24583167	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactttatatacttaacccaCcagagacacaggttgaaaaa	5	9	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24583167	T	T	24583167	3	4	154	1	0	0	0	0	1	0	0	0	13211	507	18	4	4904	4	RBBP6	16	24583167	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	4206574	24583167	65771586	459	132136											
HS3ST4	9951	broad.mit.edu	37	chr16	26147121	26147121	+	Frame_Shift_Del	DEL	T	-	-													actgtcaaagaaacccgagaTccccacctttgaggtgctgg							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26147121	-	-	26147121	7	5	154	1	0	1	0	1	0	0	0	0	7434	1435	50	0	929	0	HS3ST4	16	26147121	Frame_Shift_Del	DEL	T	TCGA-50-5066-01A-01D-1625-08	1563954	26147121	64207632	460	132137											
YPEL3	83719	broad.mit.edu	37	chr16	30106460	30106460	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcacgcccctgactgcccTggaaggactaaagggtgaga	14	11	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30106460	C	C	30106460	3	2	154	1	0	0	0	0	1	0	0	0	17618	1580	55	5	246	5	YPEL3	16	30106460	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	3959339	30106460	60248293	461	132138											
SLC6A2	6530	broad.mit.edu	37	chr16	55725744	55725744	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggaaagagcatgactggctCcctgggaaagggctctgtgc	16	9	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55725744	T	T	55725744	1	4	154	0	1	0	0	0	0	0	0	0	14797	870	30	4		4	SLC6A2	16	55725744	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	25619284	55725744	34629009	462	132139											
AMFR	267	broad.mit.edu	37	chr16	56423276	56423276	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgttctagccaggaaCgaagacaggagctaccaaaa	10	9	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56423276	G	G	56423276	3	3	154	1	0	0	0	0	1	0	0	0	571	536	19	4	858	4	AMFR	16	56423276	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	697532	56423276	33931477	463	132140											
CCDC135	84229	broad.mit.edu	37	chr16	57756693	57756693	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaaagctggagaagtggGccccgtacctcaatagcaat	13	10	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57756693	A	A	57756693	3	1	154	1	0	0	0	0	1	0	0	0	2795	1203	42	4	1382	4	CCDC135	16	57756693	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1333417	57756693	32598060	464	132141											
SLC9A5	6553	broad.mit.edu	37	chr16	67300259	67300259	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcagccagcatttgcagagCctcttcttcataccagatgc	7	13	4	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67300259	T	T	67300259	1	4	154	0	1	0	0	0	0	0	0	0	14831	754	26	4		4	SLC9A5	16	67300259	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	9543566	67300259	23054494	465	132142											
NRN1L	123904	broad.mit.edu	37	chr16	67919707	67919707	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcttcgccgagtgtctcatCcgcttgggggacagcatggg	16	11	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67919707	T	T	67919707	2	4	154	1	0	0	0	0	0	0	0	1	10754	845	30	4		4	NRN1L	16	67919707	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	619448	67919707	22435046	466	132143											
WWP2	11060	broad.mit.edu	37	chr16	69959121	69959121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacttgggccctccgtgcGcagggttcttttttggtttt	11	11	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69959121	T	T	69959121	1	4	154	0	1	0	0	0	0	0	0	0	17543	1102	38	3		3	WWP2	16	69959121	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	2039414	69959121	20395632	467	132144											
NUDT7	283927	broad.mit.edu	37	chr16	77775523	77775523	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggtttaatagaccacaaCttccaggcccagccgaatcc	9	13	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77775523	T	T	77775523	2	4	154	1	0	0	0	0	0	0	0	1	10839	564	20	4		4	NUDT7	16	77775523	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	7816402	77775523	12579230	468	132145											
PLCG2	5336	broad.mit.edu	37	chr16	81973536	81973536	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatctgggctccaacacaggAgaaggtgacatttgaaattt	10	7	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81973536	T	T	81973536	3	4	154	1	0	0	0	0	1	0	0	0	12131	304	11	5	3467	5	PLCG2	16	81973536	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	4198013	81973536	8381217	469	132146											
TRPV3	162514	broad.mit.edu	37	chr17	3431341	3431341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcacagagatgcacatgGcccagatgagcacaaacatc	8	12	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3431341	T	T	3431341	3	4	154	1	0	0	0	0	1	0	0	0	16722	1203	42	3	923	3	TRPV3	17	3431341	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08		3431341	77763869	470	132147											
TRPV3	162514	broad.mit.edu	37	chr17	3432084	3432084	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggggcagctccaagcccCtccagctctgacggccccat	11	18	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3432084	T	T	3432084	1	4	154	0	1	0	0	0	0	0	0	0	16722	696	24	4		4	TRPV3	17	3432084	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	743	3432084	77763126	471	132148											
CAMKK1	84254	broad.mit.edu	37	chr17	3786541	3786541	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtggcccccaaaccagtctCaagcaagagtcttgcatgcc	9	15	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3786541	A	A	3786541	1	1	154	0	1	0	0	0	0	0	0	0	2632	841	29	3		3	CAMKK1	17	3786541	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	354457	3786541	77408669	472	132149											
ZNF594	84622	broad.mit.edu	37	chr17	5086105	5086105	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatagggcttctctccagTatggattttctggtgtgtaa	11	7	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5086105	C	C	5086105	3	2	154	1	0	0	0	0	1	0	0	0	18151	1638	57	5	980	5	ZNF594	17	5086105	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	1299564	5086105	76109105	473	132150											
DHX33	56919	broad.mit.edu	37	chr17	5364391	5364391	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgccattgaaatactgagaGaacaggtccacatccatcgt	9	11	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5364391	A	A	5364391	2	1	154	1	0	0	0	0	0	0	0	1	4546	933	33	4		4	DHX33	17	5364391	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	278286	5364391	75830819	474	132151											
FXR2	9513	broad.mit.edu	37	chr17	7499360	7499360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggtggtagaatctcacagTcccaggcacacgaccctttg	10	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7499360	A	A	7499360	1	1	154	0	1	0	0	0	0	0	0	0	6176	1682	58	5		5	FXR2	17	7499360	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	2134969	7499360	73695850	475	132152											
TP53	7157	broad.mit.edu	37	chr17	7578393	7578393	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgctatctgagcagcgctcAtggtgggggcagcgcctcac	14	13	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578393	T	T	7578393	3	4	154	1	0	0	0	0	1	0	0	0	16505	214	8	5	761	5	TP53	17	7578393	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	79033	7578393	73616817	476	132153											
TMEM88	92162	broad.mit.edu	37	chr17	7758930	7758930	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgattgcctcgtgccctaCagccgagccctttatcggcg	11	16	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7758930	A	A	7758930	4	1	154	1	0	0	0	0	0	1	0	0	16335	489	17	3	384	3	TMEM88	17	7758930	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	180537	7758930	73436280	477	132154											
MYH4	4622	broad.mit.edu	37	chr17	10354052	10354052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatagtgtgttatgttgCacggttcaagtgattgaaag	11	4	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10354052	A	A	10354052	1	1	154	0	1	0	0	0	0	0	0	0	10131	725	25	3		3	MYH4	17	10354052	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	2595122	10354052	70841158	478	132155											
MYH1	4619	broad.mit.edu	37	chr17	10404366	10404366	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacgtttttgagatacaaatCatatttgtgctaaagggaaa	9	4	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10404366	T	T	10404366	1	4	154	0	1	0	0	0	0	0	0	0	10123	841	29	4		4	MYH1	17	10404366	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	50314	10404366	70790844	479	132156											
MYH3	4621	broad.mit.edu	37	chr17	10541663	10541663	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgctcagctcctccagctcCcgggcatagtcgctgcgctg	11	17	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10541663	T	T	10541663	2	4	154	1	0	0	0	0	0	0	0	1	10130	610	22	4		4	MYH3	17	10541663	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	137297	10541663	70653547	480	132157											
DNAH9	1770	broad.mit.edu	37	chr17	11556163	11556163	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actaaagacaatgtggaagaGatccaaaacatcatgaaaac	7	7	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11556163	T	T	11556163	3	4	154	1	0	0	0	0	1	0	0	0	4648	933	33	3	2493	3	DNAH9	17	11556163	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1014500	11556163	69639047	481	132158											
DNAH9	1770	broad.mit.edu	37	chr17	11671588	11671588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtggcccctgcgtagtccGgcttggtcagggttgaccct	15	13	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11671588	T	T	11671588	1	4	154	0	1	0	0	0	0	0	0	0	4648	1131	39	1		1	DNAH9	17	11671588	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	115425	11671588	69523622	482	132159											
RICH2	9912	broad.mit.edu	37	chr17	12883566	12883566	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggtatggccctgcttcCcttctccttggtctcaggcc	10	14	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12883566	T	T	12883566	1	4	154	0	1	0	0	0	0	0	0	0	13466	638	22	4		4	RICH2	17	12883566	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1211978	12883566	68311644	483	132160											
TNFRSF13B	23495	broad.mit.edu	37	chr17	16855909	16855909	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggaactgagagaccaGgagagtgagggcagctggca	17	8	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16855909	A	A	16855909	1	1	154	0	1	0	0	0	0	0	0	0	16410	1015	35	4		4	TNFRSF13B	17	16855909	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3972343	16855909	64339301	484	132161											
NOS2	4843	broad.mit.edu	37	chr17	26108190	26108190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactccgctgggggaacaCggtgatggccgaccttccca	12	14	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26108190	A	A	26108190	3	1	154	1	0	0	0	0	1	0	0	0	10638	536	19	3	2805	3	NOS2	17	26108190	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	9252281	26108190	55087020	485	132162											
EFCAB5	374786	broad.mit.edu	37	chr17	28407144	28407144	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcacatttccctcttagaaGaaaacctactactgcctgag	5	13	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28407144	A	A	28407144	3	1	154	1	0	0	0	0	1	0	0	0	4978	943	33	4	3311	4	EFCAB5	17	28407144	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	2298954	28407144	52788066	486	132163											
GNGT2	2793	broad.mit.edu	37	chr17	47284866	47284866	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcttccagctccctccacAcctcgacttctagcatcttc	4	19	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47284866	C	C	47284866	1	2	154	0	1	0	0	0	0	0	0	0	6598	174	6	5		5	GNGT2	17	47284866	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	18877722	47284866	33910344	487	132164											
TAC4	255061	broad.mit.edu	37	chr17	47917224	47917224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctaccttctgtgaacaGgcttctcttgcccaggaggc	10	13	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47917224	T	T	47917224	3	4	154	1	0	0	0	0	1	0	0	0	15619	991	35	2	51	2	TAC4	17	47917224	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	632358	47917224	33277986	488	132165											
SDK2	54549	broad.mit.edu	37	chr17	71391419	71391419	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgatggtgtagtcccgctccAcacggtcctgcaccacgtgg	12	15	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71391419	G	G	71391419	3	3	154	1	0	0	0	0	1	0	0	0	14082	159	6	5	3135	5	SDK2	17	71391419	Missense_Mutation	SNP	A	TCGA-50-5066-01A-01D-1625-08	23474195	71391419	9803791	489	132166											
FBF1	85302	broad.mit.edu	37	chr17	73921504	73921504	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggctccaaaggtgaagtcctCgtcaccccacatatcttcac	7	15	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73921504	T	T	73921504	3	4	154	1	0	0	0	0	1	0	0	0	5752	893	31	4	2623	4	FBF1	17	73921504	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2530085	73921504	7273706	490	132167											
HEXDC	284004	broad.mit.edu	37	chr17	80393670	80393670	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggcggtggccagcggcGtgaaggcccggcgccccagc	19	15	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80393670	A	A	80393670	3	1	154	1	0	0	0	0	1	0	0	0	7142	1145	40	4	571	4	HEXDC	17	80393670	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	6472166	80393670	801540	491	132168											
SMCHD1	23347	broad.mit.edu	37	chr18	2694615	2694615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagatagctttactgctGtggttatcacaggggtacaa	10	6	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2694615	T	T	2694615	3	4	154	1	0	0	0	0	1	0	0	0	14902	1377	48	3	994	3	SMCHD1	18	2694615	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08		2694615	75382633	492	132169											
LAMA1	284217	broad.mit.edu	37	chr18	7040236	7040236	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgacctggctgcttccCtagaaagacaacaatggcaa	9	12	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7040236	A	A	7040236	5	1	154	1	0	0	0	0	0	0	1	0	8677	695	24	2	8182	2	LAMA1	18	7040236	Splice_Site	SNP	C	TCGA-50-5066-01A-01D-1625-08	4345621	7040236	71037012	493	132170											
LAMA1	284217	broad.mit.edu	37	chr18	7049207	7049207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgaattccaacaacttgGgtgaaagatcgtcagcgctt	10	8	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7049207	T	T	7049207	3	4	154	1	0	0	0	0	1	0	0	0	8677	1232	43	2	8825	2	LAMA1	18	7049207	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	8971	7049207	71028041	494	132171											
AFG3L2	10939	broad.mit.edu	37	chr18	12366893	12366893	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggttaacctgctgactgtCacttctttggtctaatctga	8	10	4	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12366893	A	A	12366893	1	1	154	0	1	0	0	0	0	0	0	0	360	841	29	3		3	AFG3L2	18	12366893	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5317686	12366893	65710355	495	132172											
ESCO1	114799	broad.mit.edu	37	chr18	19115988	19115988	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaaattacttaagaacacTcttttatcacttacccattg	2	11	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19115988	A	A	19115988	1	1	154	0	1	0	0	0	0	0	0	0	5290	1566	54	5		5	ESCO1	18	19115988	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	6749095	19115988	58961260	496	132173											
RBBP8	5932	broad.mit.edu	37	chr18	20573261	20573261	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgtgtgatggataaacctCtggatctgtctgatcgattt	10	7	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20573261	G	G	20573261	3	3	154	1	0	0	0	0	1	0	0	0	13213	912	32	4	1509	4	RBBP8	18	20573261	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1457273	20573261	57503987	497	132174											
RBBP8	5932	broad.mit.edu	37	chr18	20581443	20581443	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtattttaagaagtgtcttTaaggactgcattctgttatt	8	5	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20581443	C	C	20581443	1	2	154	0	1	0	0	0	0	0	0	0	13213	1769	61	5		5	RBBP8	18	20581443	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	8182	20581443	57495805	498	132175											
TAF4B	6875	broad.mit.edu	37	chr18	23861998	23861998	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaactcaagtcttcacctCagcctcacctggttcctttt	5	14	5	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23861998	T	T	23861998	4	4	154	1	0	0	0	0	0	1	0	0	15646	827	29	4	968	4	TAF4B	18	23861998	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3280555	23861998	54215250	499	132176											
DTNA	1837	broad.mit.edu	37	chr18	32464844	32464844	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttagtcatttctttctatGtgataaaataccctccttaa	3	9	4	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32464844	A	A	32464844	1	1	154	0	1	0	0	0	0	0	0	0	4828	1392	48	4		4	DTNA	18	32464844	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	8602846	32464844	45612404	500	132177											
FHOD3	80206	broad.mit.edu	37	chr18	34205613	34205613	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaaggagccgcaggcactCggtgcagagcatcaagagca	14	11	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34205613	A	A	34205613	4	1	154	1	0	0	0	0	0	1	0	0	5940	893	31	3	1135	3	FHOD3	18	34205613	Nonsense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1740769	34205613	43871635	501	132178											
DCC	1630	broad.mit.edu	37	chr18	49867080	49867080	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgcgtgtgtgtgcatgtGtgcatgcgtgtgtgagtgca	18	7	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49867080	T	T	49867080	1	4	154	0	1	0	0	0	0	0	0	0	4315	1392	48	3		3	DCC	18	49867080	5'UTR	SNP	G	TCGA-50-5066-01A-01D-1625-08	15661467	49867080	28210168	502	132179											
ZNF236	7776	broad.mit.edu	37	chr18	74671788	74671788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggtaacggggaaggacGtgcttttgtttccttactct	11	8	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74671788	T	T	74671788	1	4	154	0	1	0	0	0	0	0	0	0	17915	1160	40	3		3	ZNF236	18	74671788	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	24804708	74671788	3405460	503	132180											
NFATC1	4772	broad.mit.edu	37	chr18	77170317	77170317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccgttggtcgaggccggGggttgctggccggccctgag	20	11	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77170317	T	T	77170317	1	4	154	0	1	0	0	0	0	0	0	0	10456	1247	43	2		2	NFATC1	18	77170317	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	2498529	77170317	906931	504	132181											
SAFB	6294	broad.mit.edu	37	chr19	5668041	5668041	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggggtactgtggaggctGctgccactcaggaggggagg	19	8	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5668041	A	A	5668041	1	1	154	0	1	0	0	0	0	0	0	0	13917	1334	46	4		4	SAFB	19	5668041	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08		5668041	53460942	505	132182											
TMEM146	257062	broad.mit.edu	37	chr19	5734021	5734021	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaattttgtttgagtgtaGtcaacatgagagaagagggt	12	2	1	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5734021	C	C	5734021	1	2	154	0	1	0	0	0	0	0	0	0	16183	1044	36	4		4	TMEM146	19	5734021	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	65980	5734021	53394962	506	132183											
MUC16	94025	broad.mit.edu	37	chr19	9017161	9017161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcagcatcctcacaacagGgaagagtgcccagagggaat	11	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9017161	T	T	9017161	1	4	154	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	9017161	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	3283140	9017161	50111822	507	132184											
KRI1	65095	broad.mit.edu	37	chr19	10675569	10675569	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaccccggattctgctccaGaggaaggagaggtttagaca	14	9	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10675569	C	C	10675569	1	2	154	0	1	0	0	0	0	0	0	0	8515	957	33	4		4	KRI1	19	10675569	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1658408	10675569	48453414	508	132185											
ZNF709	163051	broad.mit.edu	37	chr19	12575152	12575152	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacattcatagggtttctcCccagtgtgagtcctttcatg	8	10	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12575152	A	A	12575152	2	1	154	1	0	0	0	0	0	0	0	1	18241	610	22	2		2	ZNF709	19	12575152	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	1899583	12575152	46553831	509	132186											
SYCE2	256126	broad.mit.edu	37	chr19	13011369	13011369	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgatctttgccattttctGggtgaactcttggagctttt	10	8	3	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13011369	A	A	13011369	4	1	154	1	0	0	0	0	0	1	0	0	15548	1357	47	4	268	4	SYCE2	19	13011369	Nonsense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	436217	13011369	46117614	510	132187											
CALR	811	broad.mit.edu	37	chr19	13050438	13050438	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagactcagaatacaacatCatgtttggtgagggcctgct	12	8	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13050438	T	T	13050438	2	4	154	1	0	0	0	0	0	0	0	1	2618	816	29	4		4	CALR	19	13050438	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	39069	13050438	46078545	511	132188											
EPS15L1	58513	broad.mit.edu	37	chr19	16548592	16548592	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacactcacaaatttaggcgGtggcatgctcaaattcagat	9	9	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16548592	A	A	16548592	3	1	154	1	0	0	0	0	1	0	0	0	5235	1261	44	4	2372	4	EPS15L1	19	16548592	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	3498154	16548592	42580391	512	132189											
PRODH2	58510	broad.mit.edu	37	chr19	36302977	36302977	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggtggtaggcggggtggTgaggggagcccgatgggcag	25	5	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36302977	A	A	36302977	1	1	154	0	1	0	0	0	0	0	0	0	12655	1711	59	5		5	PRODH2	19	36302977	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	19754385	36302977	22826006	513	132190											
NFKBID	84807	broad.mit.edu	37	chr19	36387822	36387822	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttatactcacgtgtcccCctcctcatcctgggccagca	6	19	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36387822	G	G	36387822	3	3	154	1	0	0	0	0	1	0	0	0	10474	623	22	4	828	4	NFKBID	19	36387822	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	84845	36387822	22741161	514	132191											
CAPNS1	826	broad.mit.edu	37	chr19	36634000	36634000	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgatggttttggcattgaCacatgtcgcagcatggtggc	13	8	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36634000	T	T	36634000	2	4	154	1	0	0	0	0	0	0	0	1	2659	477	17	4		4	CAPNS1	19	36634000	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	246178	36634000	22494983	515	132192											
LYPD4	147719	broad.mit.edu	37	chr19	42342006	42342006	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacaatattcctctcctctCacctgcctgaaattttaagg	4	12	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42342006	A	A	42342006	1	1	154	0	1	0	0	0	0	0	0	0	9200	841	29	3		3	LYPD4	19	42342006	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	5708006	42342006	16786977	516	132193											
PSG1	5669	broad.mit.edu	37	chr19	43371900	43371900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgaactgctataagctGtagatagattaaaagagaaa	8	3	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43371900	T	T	43371900	1	4	154	0	1	0	0	0	0	0	0	0	12759	1392	48	3		3	PSG1	19	43371900	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1029894	43371900	15757083	517	132194											
PSG6	5675	broad.mit.edu	37	chr19	43430891	43430891	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgaataacagagagaagAttgtcctgtgtggcaccttt	12	6	0	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43430891	T	T	43430891	1	4	154	0	1	0	0	0	0	0	0	0	12765	348	12	5		5	PSG6	19	43430891	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	58991	43430891	15698092	518	132195											
PSG6	5675	broad.mit.edu	37	chr19	43528911	43528911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctttatgatgtgtaagGtgtaggatcctgcgtcctcc	11	10	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43528911	T	T	43528911	3	4	154	1	0	0	0	0	1	0	0	0	12765	1261	44	3		3	PSG6	19	43528911	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	98020	43528911	15600072	519	132196											
PSG6	5675	broad.mit.edu	37	chr19	43576563	43576563	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatcggtcccgtatttcacAttcatagggtcctgtttcat	7	10	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43576563	T	T	43576563	1	4	154	0	1	0	0	0	0	0	0	0	12765	232	8	5		5	PSG6	19	43576563	Intron	SNP	A	TCGA-50-5066-01A-01D-1625-08	47652	43576563	15552420	520	132197											
PSG5	5673	broad.mit.edu	37	chr19	43680499	43680499	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccacctgctctgttttaggGaagcacagactttctcaagt	9	11	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43680499	T	T	43680499	1	4	154	0	1	0	0	0	0	0	0	0	12764	1189	41	3		3	PSG5	19	43680499	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	103936	43680499	15448484	521	132198											
PSG4	5672	broad.mit.edu	37	chr19	43709570	43709570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctctccaggagacccCatccagtcactctgcttcct	5	19	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43709570	A	A	43709570	1	1	154	0	1	0	0	0	0	0	0	0	12763	609	21	2		2	PSG4	19	43709570	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	29071	43709570	15419413	522	132199											
PSG9	5678	broad.mit.edu	37	chr19	43762451	43762451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgatttctagtaatttgGgggataaagagcttttgtcc	10	5	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43762451	T	T	43762451	2	4	154	1	0	0	0	0	0	0	0	1	12768	1219	43	2		2	PSG9	19	43762451	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	52881	43762451	15366532	523	132200											
OPA3	80207	broad.mit.edu	37	chr19	46032229	46032229	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtcagctgggccggtccagGatgggacagtgcggagaata	17	8	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46032229	A	A	46032229	1	1	154	0	1	0	0	0	0	0	0	0	10966	1189	41	4		4	OPA3	19	46032229	3'UTR	SNP	G	TCGA-50-5066-01A-01D-1625-08	2269778	46032229	13096754	524	132201											
TULP2	7288	broad.mit.edu	37	chr19	49399713	49399713	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctaaaaggcgctcctccCgcagacaagagcgccaaagc	9	16	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49399713	T	T	49399713	3	4	154	1	0	0	0	0	1	0	0	0	16900	652	23	4	1417	4	TULP2	19	49399713	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3367484	49399713	9729270	525	132202											
CGB	1082	broad.mit.edu	37	chr19	49536578	49536578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccattttatacagagtcaCagtacagaactctggtagaa	7	8	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49536578	A	A	49536578	1	1	154	0	1	0	0	0	0	0	0	0	3326	493	17	3		3	CGB	19	49536578	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	136865	49536578	9592405	526	132203											
PPFIA3	8541	broad.mit.edu	37	chr19	49642922	49642922	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatctgtgccctctgtcctCagaatcatgtccctaaggag	9	13	4	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49642922	T	T	49642922	1	4	154	0	1	0	0	0	0	0	0	0	12407	841	29	4		4	PPFIA3	19	49642922	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	106344	49642922	9486061	527	132204											
SHANK1	50944	broad.mit.edu	37	chr19	51207301	51207301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcccccaagtcaggtcCcccaactcccccatcccacc	5	24	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51207301	A	A	51207301	1	1	154	0	1	0	0	0	0	0	0	0	14377	638	22	2		2	SHANK1	19	51207301	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	1564379	51207301	7921682	528	132205											
KLK1	3816	broad.mit.edu	37	chr19	51323053	51323054	+	Intron	DNP	GG	TT	TT													gcgagtggctacagctagctGggaagcagtgaagcagatgc							TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51323054	TT	TT	51323053	1	4	154	0	1	0	0	0	0	0	0	0	8468	1363	47	2		2	KLK1	19	51323053	Intron	DNP	GG	TCGA-50-5066-01A-01D-1625-08	115752	51323053	7805930	529	132206											
LILRB2	10288	broad.mit.edu	37	chr19	54780306	54780306	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttggaaatcagcctttctCtgggctgggggaagaaggac	15	7	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54780306	G	G	54780306	3	3	154	1	0	0	0	0	1	0	0	0	8863	912	32	4	324	4	LILRB2	19	54780306	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3457253	54780306	4348677	530	132207											
NLRP4	147945	broad.mit.edu	37	chr19	56369522	56369522	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgacttgatggagaaaCggccggtgcaggtgcttctg	17	7	1	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56369522	A	A	56369522	2	1	154	1	0	0	0	0	0	0	0	1	10574	527	19	3		3	NLRP4	19	56369522	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	1589216	56369522	2759461	531	132208											
ZIM2	23619	broad.mit.edu	37	chr19	57286342	57286342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggactcttgctgcctcatggGctttgagatgttgaagaaga	13	7	2	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57286342	C	C	57286342	3	2	154	1	0	0	0	0	1	0	0	0	17810	1203	42	4	289	4	ZIM2	19	57286342	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	916820	57286342	1842641	532	132209											
ZNF671	79891	broad.mit.edu	37	chr19	58231624	58231624	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttccctcccaatggctgcTcccagagttccactctaggg	10	15	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58231624	C	C	58231624	1	2	154	0	1	0	0	0	0	0	0	0	18205	1566	54	5		5	ZNF671	19	58231624	3'UTR	SNP	T	TCGA-50-5066-01A-01D-1625-08	945282	58231624	897359	533	132210											
ZNF256	10172	broad.mit.edu	37	chr19	58453004	58453004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtttaatgaggtgacagCtctggctaaaggatttccca	12	7	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58453004	A	A	58453004	3	1	154	1	0	0	0	0	1	0	0	0	17925	797	28	3	715	3	ZNF256	19	58453004	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	221380	58453004	675979	534	132211											
C20orf96	140680	broad.mit.edu	37	chr20	270179	270179	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctccaacccccacaccagCtcccaggtgcctccgcccac	6	23	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	270179	T	T	270179	1	4	154	0	1	0	0	0	0	0	0	0	2144	812	28	4		4	C20orf96	20	270179	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08		270179	62755341	535	132212											
RSPO4	343637	broad.mit.edu	37	chr20	948729	948729	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggcaggtggaacagccgttCtcctctgagcagatgataca	12	10	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	948729	A	A	948729	3	1	154	1	0	0	0	0	1	0	0	0	13823	912	32	3	588	3	RSPO4	20	948729	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	678550	948729	62076791	536	132213											
SIGLEC1	6614	broad.mit.edu	37	chr20	3673237	3673237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcctggcaagagtaggCgcctgcatgagcccgcgtgg	17	12	0	2	rs147714278	byFrequency	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3673237	A	A	3673237	3	1	154	1	0	0	0	0	1	0	0	0	14418	768	27	3	1196	3	SIGLEC1	20	3673237	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2724508	3673237	59352283	537	132214											
ANKRD5	63926	broad.mit.edu	37	chr20	10030169	10030169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaactagccaggccaggaGccaaaaatccaaatccactg	7	12	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10030169	T	T	10030169	3	4	154	1	0	0	0	0	1	0	0	0	676	971	34	3	970	3	ANKRD5	20	10030169	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	6356932	10030169	52995351	538	132215											
RALGAPA2	57186	broad.mit.edu	37	chr20	20392725	20392725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagacttgggctgcgaaatCctcgaatgtcattacttcgc	9	10	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20392725	A	A	20392725	3	1	154	1	0	0	0	0	1	0	0	0	13122	855	30	3	66	3	RALGAPA2	20	20392725	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	10362556	20392725	42632795	539	132216											
CST8	10047	broad.mit.edu	37	chr20	23476619	23476619	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgaagcaatggcaggtGggaggctcttcccaatgtgc	13	8	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23476619	C	C	23476619	1	2	154	0	1	0	0	0	0	0	0	0	4012	1363	47	4		4	CST8	20	23476619	3'UTR	SNP	G	TCGA-50-5066-01A-01D-1625-08	3083894	23476619	39548901	540	132217											
MYLK2	85366	broad.mit.edu	37	chr20	30408223	30408223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagcccaaggctgagcaggGagcctcaggcagccaggatc	15	12	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30408223	T	T	30408223	3	4	154	1	0	0	0	0	1	0	0	0	10151	1174	41	3	353	3	MYLK2	20	30408223	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	6931604	30408223	32617297	541	132218											
C20orf185	359710	broad.mit.edu	37	chr20	31643259	31643259	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgctggccctgtggtcCctgcttctgctctggggcct	13	14	3	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31643259	T	T	31643259	2	4	154	1	0	0	0	0	0	0	0	1	2119	610	22	4		4	C20orf185	20	31643259	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	1235036	31643259	31382261	542	132219											
RBL1	5933	broad.mit.edu	37	chr20	35690699	35690699	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagaattattataagctgTaatactaagttacacaatgg	7	4	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35690699	A	A	35690699	1	1	154	0	1	0	0	0	0	0	0	0	13217	1653	57	5		5	RBL1	20	35690699	Intron	SNP	T	TCGA-50-5066-01A-01D-1625-08	4047440	35690699	27334821	543	132220											
PPP1R16B	26051	broad.mit.edu	37	chr20	37518147	37518147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttactacattcttcatagGcctgggggagagcgggtctt	13	8	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37518147	T	T	37518147	1	4	154	0	1	0	0	0	0	0	0	0	12467	1218	42	3		3	PPP1R16B	20	37518147	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1827448	37518147	25507373	544	132221											
LPIN3	64900	broad.mit.edu	37	chr20	39983249	39983249	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaggaggtttatgtggtGcaggaaacactgccatggct	15	6	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39983249	A	A	39983249	1	1	154	0	1	0	0	0	0	0	0	0	9007	1334	46	4		4	LPIN3	20	39983249	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	2465102	39983249	23042271	545	132222											
RIMS4	140730	broad.mit.edu	37	chr20	43386379	43386379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtccacctccaactgaCcgttccgctcctgcagaccg	7	17	0	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43386379	A	A	43386379	3	1	154	1	0	0	0	0	1	0	0	0	13481	507	18	3	438	3	RIMS4	20	43386379	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3403130	43386379	19639141	546	132223											
CDH22	64405	broad.mit.edu	37	chr20	44845618	44845618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtcaaggtcaggcacagCcgtccggattacgcctgtgg	15	12	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44845618	A	A	44845618	3	1	154	1	0	0	0	0	1	0	0	0	3137	739	26	3	1833	3	CDH22	20	44845618	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1459239	44845618	18179902	547	132224											
ELMO2	63916	broad.mit.edu	37	chr20	45003068	45003068	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtcttcccggctactgttCtccaagacaatctgtcgggg	10	12	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45003068	A	A	45003068	3	1	154	1	0	0	0	0	1	0	0	0	5108	912	32	3	1012	3	ELMO2	20	45003068	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	157450	45003068	18022452	548	132225											
KCNB1	3745	broad.mit.edu	37	chr20	47990687	47990687	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtctttcttacccatattCtccccatttttctcaaccac	1	15	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47990687	A	A	47990687	3	1	154	1	0	0	0	0	1	0	0	0	8082	912	32	3	1170	3	KCNB1	20	47990687	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	2987619	47990687	15034833	549	132226											
TSHZ2	128553	broad.mit.edu	37	chr20	51871474	51871474	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctacaaaaacctttaGaccctacaatcaaatatcaa	1	12	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51871474	A	A	51871474	3	1	154	1	0	0	0	0	1	0	0	0	16749	942	33	4	1483	4	TSHZ2	20	51871474	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	3880787	51871474	11154046	550	132227											
DOK5	55816	broad.mit.edu	37	chr20	53260092	53260092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcacacggcagcacagCacgggacagctctaccgctt	9	16	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53260092	A	A	53260092	3	1	154	1	0	0	0	0	1	0	0	0	4740	709	25	3	857	3	DOK5	20	53260092	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	1388618	53260092	9765428	551	132228											
C20orf166	128826	broad.mit.edu	37	chr20	61150906	61150906	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acacctctcgggtctctggtCtgcagttcctcgtctggcct	10	15	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61150906	G	G	61150906	1	3	154	0	1	0	0	0	0	0	0	0	2117	928	32	4		4	C20orf166	20	61150906	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	7890814	61150906	1874614	552	132229											
TPTE	7179	broad.mit.edu	37	chr21	10916319	10916319	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaaaccctcccagagtGgggacattggccctcctgcc	11	15	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10916319	C	C	10916319	1	2	154	0	1	0	0	0	0	0	0	0	16554	1363	47	4		4	TPTE	21	10916319	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08		10916319	37213576	553	132230											
C21orf59	56683	broad.mit.edu	37	chr21	33974134	33974134	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataattgcctaggagaaaggTgagctaatctctttggaagt	11	5	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33974134	G	G	33974134	1	3	154	0	1	0	0	0	0	0	0	0	2152	1711	59	5		5	C21orf59	21	33974134	3'UTR	SNP	T	TCGA-50-5066-01A-01D-1625-08	23057815	33974134	14155761	554	132231											
GNB1L	54584	broad.mit.edu	37	chr22	19799918	19799918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacacggagtccacgacagCgctcctgccctccgcgaggt	12	17	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19799918	A	A	19799918	3	1	154	1	0	0	0	0	1	0	0	0	6580	768	27	3	692	3	GNB1L	22	19799918	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08		19799918	31504648	555	132232											
HIC2	23119	broad.mit.edu	37	chr22	21800489	21800489	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagggctacgagacggtGtcctacggggacaacttgta	15	9	0	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21800489	T	T	21800489	2	4	154	1	0	0	0	0	0	0	0	1	7169	1364	48	3		3	HIC2	22	21800489	Silent	SNP	G	TCGA-50-5066-01A-01D-1625-08	2000571	21800489	29504077	556	132233											
RTDR1	27156	broad.mit.edu	37	chr22	23401638	23401638	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacagaggtgaatgaaggGctcagggtttgaactcgatg	14	7	2	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23401638	A	A	23401638	1	1	154	0	1	0	0	0	0	0	0	0	13830	1218	42	4		4	RTDR1	22	23401638	3'UTR	SNP	G	TCGA-50-5066-01A-01D-1625-08	1601149	23401638	27902928	557	132234											
PIWIL3	440822	broad.mit.edu	37	chr22	25158306	25158306	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctcaacaaccaactctatGttcttttcagtacaggcaca	5	13	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25158306	A	A	25158306	1	1	154	0	1	0	0	0	0	0	0	0	12054	1392	48	4		4	PIWIL3	22	25158306	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	1756668	25158306	26146260	558	132235											
MYO18B	84700	broad.mit.edu	37	chr22	26423476	26423476	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgactcgtcctcatcctcCggctccatcgtgtccttcaa	6	17	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26423476	T	T	26423476	2	4	154	1	0	0	0	0	0	0	0	1	10160	639	23	4		4	MYO18B	22	26423476	Silent	SNP	C	TCGA-50-5066-01A-01D-1625-08	1265170	26423476	24881090	559	132236											
CBX7	23492	broad.mit.edu	37	chr22	39529820	39529820	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaaataattaccccgccCccaacccatccctatctctg	2	17	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39529820	T	T	39529820	1	4	154	0	1	0	0	0	0	0	0	0	2749	638	22	4		4	CBX7	22	39529820	3'UTR	SNP	C	TCGA-50-5066-01A-01D-1625-08	13106344	39529820	11774746	560	132237											
TBC1D22A	25771	broad.mit.edu	37	chr22	47188355	47188355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacctttcggctgagctGgtggagggctcttgggaagg	17	10	1	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47188355	T	T	47188355	1	4	154	0	1	0	0	0	0	0	0	0	15730	1363	47	2		2	TBC1D22A	22	47188355	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	7658535	47188355	4116211	561	132238											
SELO	83642	broad.mit.edu	37	chr22	50649442	50649442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagtgcacagtcactccCtgggcccaccccagccctgg	9	19	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50649442	A	A	50649442	1	1	154	0	1	0	0	0	0	0	0	0	14131	696	24	2		2	SELO	22	50649442	Intron	SNP	C	TCGA-50-5066-01A-01D-1625-08	3461087	50649442	655124	562	132239											
BMX	660	broad.mit.edu	37	chrX	15561295	15561295	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcaaccagtgaaaggggGatttccattcacatttgaac	11	8	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15561295	T	T	15561295	1	4	154	0	1	0	0	0	0	0	0	0	1479	1189	41	3		3	BMX	23	15561295	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08		15561295	139709265	563	132240											
SSX3	10214	broad.mit.edu	37	chrX	48209006	48209006	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctggaaccgaacctgcaGtatctctgaaggacacctgt	11	11	2	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48209006	A	A	48209006	1	1	154	0	1	0	0	0	0	0	0	0	15323	1024	36	4		4	SSX3	23	48209006	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	32647711	48209006	107061554	564	132241											
SHROOM4	57477	broad.mit.edu	37	chrX	50376446	50376446	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatcaaaatcaccacagTgtagtggcttacaacacatg	8	9	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50376446	A	A	50376446	3	1	154	1	0	0	0	0	1	0	0	0	14409	1696	59	5	1878	5	SHROOM4	23	50376446	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	2167440	50376446	104894114	565	132242											
TBX22	50945	broad.mit.edu	37	chrX	79278684	79278684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcttcaaggatctgaaCtgtggaaaagattccatgac	11	7	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79278684	A	A	79278684	3	1	154	1	0	0	0	0	1	0	0	0	15780	564	20	3	307	3	TBX22	23	79278684	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	28902238	79278684	75991876	566	132243											
POF1B	79983	broad.mit.edu	37	chrX	84558432	84558432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttagtggtaatagtagtCcttccaccagtggagggttg	12	6	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84558432	A	A	84558432	3	1	154	1	0	0	0	0	1	0	0	0	12277	854	30	3	152	3	POF1B	23	84558432	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	5279748	84558432	70712128	567	132244											
TAF7L	54457	broad.mit.edu	37	chrX	100548046	100548046	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactccatggcccacctcgtTggggttgtaaaatggcttcc	10	13	0	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100548046	A	A	100548046	5	1	154	1	0	0	0	0	0	0	1	0	15652	1827	63	5		5	TAF7L	23	100548046	Splice_Site	SNP	T	TCGA-50-5066-01A-01D-1625-08	15989614	100548046	54722514	568	132245											
NUP62CL	54830	broad.mit.edu	37	chrX	106396568	106396568	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagttaataaaaaggctgatGaaaggaatttggagtgacaa	11	2	0	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106396568	A	A	106396568	1	1	154	0	1	0	0	0	0	0	0	0	10864	1305	45	4		4	NUP62CL	23	106396568	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	5848522	106396568	48873992	569	132246											
DCX	1641	broad.mit.edu	37	chrX	110576267	110576267	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggagcaataaaacccagtGgttatgcttaccattttcat	7	8	1	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110576267	C	C	110576267	1	2	154	0	1	0	0	0	0	0	0	0	4351	1363	47	4		4	DCX	23	110576267	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	4179699	110576267	44694293	570	132247											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698305	111698305	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgggatcatatctgggcctGacaagagtaccttactgaag	12	8	2	3			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111698305	T	T	111698305	3	4	154	1	0	0	0	0	1	0	0	0	17710	1290	45	3	351	3	ZCCHC16	23	111698305	Missense_Mutation	SNP	G	TCGA-50-5066-01A-01D-1625-08	1122038	111698305	43572255	571	132248											
ATP1B4	23439	broad.mit.edu	37	chrX	119512457	119512457	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacacagtgatttcacctgGgtacaactccctttagctca	6	13	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119512457	C	C	119512457	1	2	154	0	1	0	0	0	0	0	0	0	1139	1247	43	4		4	ATP1B4	23	119512457	Intron	SNP	G	TCGA-50-5066-01A-01D-1625-08	7814152	119512457	35758103	572	132249											
ACTRT1	139741	broad.mit.edu	37	chrX	127185488	127185488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaggacctctccccggCtcttgcgtagctctttctct	7	18	4	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127185488	A	A	127185488	3	1	154	1	0	0	0	0	1	0	0	0	218	797	28	3	436	3	ACTRT1	23	127185488	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	7673031	127185488	28085072	573	132250											
CXorf48	54967	broad.mit.edu	37	chrX	134292127	134292127	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaggaaagaaattacctcTtccgtatgaatacaacggat	7	8	1	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134292127	A	A	134292127	3	1	154	1	0	0	0	0	1	0	0	0	4144	1606	56	5	276	5	CXorf48	23	134292127	Missense_Mutation	SNP	T	TCGA-50-5066-01A-01D-1625-08	7106639	134292127	20978433	574	132251											
MAGEC3	139081	broad.mit.edu	37	chrX	140953329	140953329	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagggaggtgaggctttttCtgaggggtggaacttcagat	17	4	2	4			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140953329	A	A	140953329	3	1	154	1	0	0	0	0	1	0	0	0	9274	912	32	3	202	3	MAGEC3	23	140953329	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	6661202	140953329	14317231	575	132252											
MAGEC3	139081	broad.mit.edu	37	chrX	140953365	140953365	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagatcagcgaatggatagtCttgtcctctgccccacatac	8	13	3	1			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140953365	A	A	140953365	3	1	154	1	0	0	0	0	1	0	0	0	9274	913	32	3	238	3	MAGEC3	23	140953365	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	36	140953365	14317195	576	132253											
SLITRK2	84631	broad.mit.edu	37	chrX	144905986	144905986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactcacgataaaacagaCggccatgtctacaactatat	7	10	2	2			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144905986	A	A	144905986	3	1	154	1	0	0	0	0	1	0	0	0	14857	535	19	3	2045	3	SLITRK2	23	144905986	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	3952621	144905986	10364574	577	132254											
HCFC1	3054	broad.mit.edu	37	chrX	153220036	153220036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcctccagggctgtcaCagtcactgtggtgctgggcg	15	12	2	0			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153220036	A	A	153220036	3	1	154	1	0	0	0	0	1	0	0	0	7057	478	17	3	2333	3	HCFC1	23	153220036	Missense_Mutation	SNP	C	TCGA-50-5066-01A-01D-1625-08	8314050	153220036	2050524	578	132255											
SLC2A7	155184	broad.mit.edu	37	chr1	9064913	9064913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggactgcaggaagatctcGgtcctcaccaccgaggggac	14	12	2	1	rs139989195		TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9064913	T	T	9064913	2	4	155	1	0	0	0	0	0	0	0	1	14664	1103	39	1		1	SLC2A7	1	9064913	Silent	SNP	G	TCGA-50-5068-01A-01D-1625-08		9064913	240185708	1	132256											
PLOD1	5351	broad.mit.edu	37	chr1	12012839	12012839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggggctggggatccaccGgccaggctgcacgggaacag	19	11	0	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12012839	T	T	12012839	1	4	155	0	1	0	0	0	0	0	0	0	12196	1131	39	1		1	PLOD1	1	12012839	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	2947926	12012839	237237782	2	132257											
AADACL3	126767	broad.mit.edu	37	chr1	12785337	12785337	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcggaggggcaatagccGcagtggtttgtcaacaactt	13	8	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12785337	A	A	12785337	3	1	155	1	0	0	0	0	1	0	0	0	12	1087	38	4	445	4	AADACL3	1	12785337	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	772498	12785337	236465284	3	132258											
LOC649330	649330	broad.mit.edu	37	chr1	12907473	12907473	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcatggagctactgctctGctcctcttctgacttagcat	7	13	4	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12907473	C	C	12907473	3	2	155	1	0	0	0	0	1	0	0	0	8969	1328	46	4	215	4	LOC649330	1	12907473	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	122136	12907473	236343148	4	132259											
CASP9	842	broad.mit.edu	37	chr1	15834374	15834374	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggagactcaccaaatcTgcatttcccctcaaactctc	4	15	5	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15834374	A	A	15834374	2	1	155	1	0	0	0	0	0	0	0	1	2705	1567	55	5		5	CASP9	1	15834374	Silent	SNP	T	TCGA-50-5068-01A-01D-1625-08	2926901	15834374	233416247	5	132260											
NBPF1	55672	broad.mit.edu	37	chr1	16902905	16902905	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaatgagcaggaggcatctCtcccttcccgtaacttctcc	7	15	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902905	T	T	16902905	3	4	155	1	0	0	0	0	1	0	0	0	10286	913	32	4	1492	4	NBPF1	1	16902905	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	1068531	16902905	232347716	6	132261											
EPHB2	2048	broad.mit.edu	37	chr1	23219500	23219500	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccgtggcaggttacgggCgctacagcggcaagatgtac	15	11	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23219500	T	T	23219500	3	4	155	1	0	0	0	0	1	0	0	0	5217	768	27	4	1578	4	EPHB2	1	23219500	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	6316595	23219500	226031121	7	132262											
EIF3I	8668	broad.mit.edu	37	chr1	32694336	32694336	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctctccagctttttgaCtccacaactcttgaacatca	3	14	4	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32694336	T	T	32694336	2	4	155	1	0	0	0	0	0	0	0	1	5061	564	20	4		4	EIF3I	1	32694336	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	9474836	32694336	216556285	8	132263											
INADL	10207	broad.mit.edu	37	chr1	62350083	62350083	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgccactgatacatggtAtgatatcatttctctttgtt	6	7	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62350083	G	G	62350083	1	3	155	0	1	0	0	0	0	0	0	0	7801	464	16	5		5	INADL	1	62350083	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	29655747	62350083	186900538	9	132264											
DOCK7	85440	broad.mit.edu	37	chr1	62941485	62941485	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagttccccatgggcacGgccatctaaagtaaagggtg	12	9	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62941485	A	A	62941485	3	1	155	1	0	0	0	0	1	0	0	0	4732	1116	39	4	588	4	DOCK7	1	62941485	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	591402	62941485	186309136	10	132265											
RABGGTB	5876	broad.mit.edu	37	chr1	76251904	76251904	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcatctgcgcaggcgcccGgctcctaagtctacccagga	12	16	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76251904	A	A	76251904	1	1	155	0	1	0	0	0	0	0	0	0	13076	1131	39	4		4	RABGGTB	1	76251904	5'UTR	SNP	G	TCGA-50-5068-01A-01D-1625-08	13310419	76251904	172998717	11	132266											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77510030	77510030	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgcggctatgggcgtgacGtgggcaatcgcaccagcctg	15	13	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77510030	A	A	77510030	3	1	155	1	0	0	0	0	1	0	0	0	15345	1145	40	4	413	4	ST6GALNAC5	1	77510030	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	1258126	77510030	171740591	12	132267											
AKNAD1	254268	broad.mit.edu	37	chr1	109359906	109359906	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgtggtttgggtgtgGgtggattcgtgcacccgctg	17	8	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109359906	A	A	109359906	1	1	155	0	1	0	0	0	0	0	0	0	464	1247	43	4		4	AKNAD1	1	109359906	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	31849876	109359906	139890715	13	132268											
BCL9	607	broad.mit.edu	37	chr1	147096156	147096156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaggaggtcatccgacCtggagccaccggaatacctg	12	13	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147096156	A	A	147096156	3	1	155	1	0	0	0	0	1	0	0	0	1386	681	24	2	3703	2	BCL9	1	147096156	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	37736250	147096156	102154465	14	132269											
PIP5K1A	8394	broad.mit.edu	37	chr1	151204699	151204699	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatagggactggcaagttaTggctacctctgtttaacccc	10	10	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151204699	C	C	151204699	1	2	155	0	1	0	0	0	0	0	0	0	12034	1479	51	5		5	PIP5K1A	1	151204699	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	4108543	151204699	98045922	15	132270											
LCE3E	353145	broad.mit.edu	37	chr1	152538322	152538322	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaagagggtatatgggaaGgcatgcgtcagatggggctg	18	5	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152538322	A	A	152538322	1	1	155	0	1	0	0	0	0	0	0	0	8745	1015	35	4		4	LCE3E	1	152538322	3'UTR	SNP	G	TCGA-50-5068-01A-01D-1625-08	1333623	152538322	96712299	16	132271											
NTRK1	4914	broad.mit.edu	37	chr1	156845739	156845739	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttgctgaaggggtgcaggTtgaattttagcccccatgca	13	9	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156845739	A	A	156845739	1	1	155	0	1	0	0	0	0	0	0	0	10801	1740	60	5		5	NTRK1	1	156845739	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	4307417	156845739	92404882	17	132272											
NR1I3	9970	broad.mit.edu	37	chr1	161206192	161206192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagcgagggtgtaaaggCtgactaatagggagtttggt	15	6	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161206192	A	A	161206192	1	1	155	0	1	0	0	0	0	0	0	0	10716	812	28	3		3	NR1I3	1	161206192	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	4360453	161206192	88044429	18	132273											
RXRG	6258	broad.mit.edu	37	chr1	165389184	165389184	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggatgggtagttcatgtttCcaatcccgggaagccctggt	13	9	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165389184	T	T	165389184	3	4	155	1	0	0	0	0	1	0	0	0	13876	855	30	4	1058	4	RXRG	1	165389184	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	4182992	165389184	83861437	19	132274											
FAM78B	149297	broad.mit.edu	37	chr1	166135209	166135209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccgctcccgtgccgcgcGgcgagtcgcttacatgccca	12	17	0	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166135209	T	T	166135209	1	4	155	0	1	0	0	0	0	0	0	0	5680	1131	39	1		1	FAM78B	1	166135209	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	746025	166135209	83115412	20	132275											
TBX19	9095	broad.mit.edu	37	chr1	168260408	168260408	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccttttagacggatgtttCcagtcctaaagattagtgtc	8	8	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168260408	T	T	168260408	3	4	155	1	0	0	0	0	1	0	0	0	15776	855	30	4	220	4	TBX19	1	168260408	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	2125199	168260408	80990213	21	132276											
METTL13	51603	broad.mit.edu	37	chr1	171753362	171753362	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccttcatcatgaccaagttCaggccagtccctggctctgc	9	15	4	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171753362	T	T	171753362	2	4	155	1	0	0	0	0	0	0	0	1	9590	825	29	4		4	METTL13	1	171753362	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	3492954	171753362	77497259	22	132277											
PRDX6	9588	broad.mit.edu	37	chr1	173454450	173454450	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgttaactgatgaaattcaGagcatgtgttgggtttagat	11	4	1	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173454450	C	C	173454450	1	2	155	0	1	0	0	0	0	0	0	0	12575	957	33	4		4	PRDX6	1	173454450	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	1701088	173454450	75796171	23	132278											
RC3H1	149041	broad.mit.edu	37	chr1	173931109	173931109	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgtgccatactgagaGtttacaacacgttcttggag	12	8	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173931109	A	A	173931109	2	1	155	1	0	0	0	0	0	0	0	1	13274	1020	36	4		4	RC3H1	1	173931109	Silent	SNP	G	TCGA-50-5068-01A-01D-1625-08	476659	173931109	75319512	24	132279											
TNN	63923	broad.mit.edu	37	chr1	175048874	175048874	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgtgccctcgggccgccGgactcttctttccaatgcac	10	15	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175048874	A	A	175048874	1	1	155	0	1	0	0	0	0	0	0	0	16446	1131	39	4		4	TNN	1	175048874	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	1117765	175048874	74201747	25	132280											
HMCN1	83872	broad.mit.edu	37	chr1	186120681	186120681	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaataatatgctatgaagAcaataaaatagactaaaaat	6	3	0	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186120681	G	G	186120681	1	3	155	0	1	0	0	0	0	0	0	0	7287	290	10	5		5	HMCN1	1	186120681	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	11071807	186120681	63129940	26	132281											
PPP1R15B	84919	broad.mit.edu	37	chr1	204379080	204379080	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaaagttctggggattaTaaggatctacactgcagaaa	10	6	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204379080	C	C	204379080	3	2	155	1	0	0	0	0	1	0	0	0	12465	1406	49	5	689	5	PPP1R15B	1	204379080	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	18258399	204379080	44871541	27	132282											
IL24	11009	broad.mit.edu	37	chr1	207073601	207073601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagttggtttctatgctgaCccctaacctggagacgtctt	10	10	2	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207073601	A	A	207073601	1	1	155	0	1	0	0	0	0	0	0	0	7747	522	18	3		3	IL24	1	207073601	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	2694521	207073601	42177020	28	132283											
CR1L	1379	broad.mit.edu	37	chr1	207885932	207885932	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaagccatcaggacaactTtttacctgggcaggaagtgt	10	10	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207885932	A	A	207885932	1	1	155	0	1	0	0	0	0	0	0	0	3873	1856	64	5		5	CR1L	1	207885932	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	812331	207885932	41364689	29	132284											
KCNK2	3776	broad.mit.edu	37	chr1	215259895	215259895	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctatctgatcatcggagcCaccgtgttcaaagcattgga	9	11	4	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215259895	A	A	215259895	2	1	155	1	0	0	0	0	0	0	0	1	8136	581	21	2		2	KCNK2	1	215259895	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	7373963	215259895	33990726	30	132285											
DISP1	84976	broad.mit.edu	37	chr1	223156419	223156419	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctttgcttttttttttttCagaccatccagacctttcaa	3	11	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223156419	T	T	223156419	1	4	155	0	1	0	0	0	0	0	0	0	4579	841	29	4		4	DISP1	1	223156419	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	7896524	223156419	26094202	31	132286											
CAPN9	10753	broad.mit.edu	37	chr1	230895275	230895275	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagactgctggctattaGccgccatcgcctcccttacg	10	15	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230895275	A	A	230895275	3	1	155	1	0	0	0	0	1	0	0	0	2658	971	34	4	311	4	CAPN9	1	230895275	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	7738856	230895275	18355346	32	132287											
SLC35F3	148641	broad.mit.edu	37	chr1	234041513	234041513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagctgcaaaagtaagaccCcctcacgtcatgtttcccgt	8	14	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234041513	A	A	234041513	1	1	155	0	1	0	0	0	0	0	0	0	14704	638	22	2		2	SLC35F3	1	234041513	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	3146238	234041513	15209108	33	132288											
RBM34	23029	broad.mit.edu	37	chr1	235295187	235295187	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcttaggtttactgacattCttcaatcgtggatttgaatt	8	6	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235295187	A	A	235295187	3	1	155	1	0	0	0	0	1	0	0	0	13239	912	32	3	162	3	RBM34	1	235295187	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	1253674	235295187	13955434	34	132289											
RYR2	6262	broad.mit.edu	37	chr1	237906792	237906792	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttagaatgagctgtgagCagcagataatattgtttttc	10	4	0	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237906792	G	G	237906792	1	3	155	0	1	0	0	0	0	0	0	0	13880	725	25	4		4	RYR2	1	237906792	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	2611605	237906792	11343829	35	132290											
NLRP3	114548	broad.mit.edu	37	chr1	247588207	247588207	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatcctgtttgaggagtccGacctcaggaatcatggactg	11	9	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588207	A	A	247588207	3	1	155	1	0	0	0	0	1	0	0	0	10573	1058	37	4	1472	4	NLRP3	1	247588207	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	9681415	247588207	1662414	36	132291											
KIDINS220	57498	broad.mit.edu	37	chr2	8890421	8890421	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtagagggagcggggggtAcgccagtcctccaatactga	15	9	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8890421	T	T	8890421	3	4	155	1	0	0	0	0	1	0	0	0	8341	391	14	5	2108	5	KIDINS220	2	8890421	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08		8890421	234308952	37	132292											
FAM179A	165186	broad.mit.edu	37	chr2	29268167	29268167	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccccagcagtgtggccaCtgacatcccccttctctttc	7	18	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29268167	T	T	29268167	1	4	155	0	1	0	0	0	0	0	0	0	5550	580	20	4		4	FAM179A	2	29268167	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	20377746	29268167	213931206	38	132293											
LTBP1	4052	broad.mit.edu	37	chr2	33246130	33246130	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtcctggggctgcttcCtcgtggggccctcctgagca	14	14	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33246130	A	A	33246130	2	1	155	1	0	0	0	0	0	0	0	1	9160	668	24	2		2	LTBP1	2	33246130	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	3977963	33246130	209953243	39	132294											
SOS1	6654	broad.mit.edu	37	chr2	39281778	39281778	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgaaaacaattttgaatTggagacaaagggctctctaa	9	6	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39281778	A	A	39281778	3	1	155	1	0	0	0	0	1	0	0	0	15050	1812	63	5	3380	5	SOS1	2	39281778	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	6035648	39281778	203917595	40	132295											
SEMA4C	54910	broad.mit.edu	37	chr2	97529783	97529783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctccaccgaggccccaCctgctcctccatcagcgggt	11	19	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97529783	A	A	97529783	3	1	155	1	0	0	0	0	1	0	0	0	14146	507	18	3	1311	3	SEMA4C	2	97529783	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	58248005	97529783	145669590	41	132296											
IL18RAP	8807	broad.mit.edu	37	chr2	103061650	103061650	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttttctcctttctcagtAttaaatccactttaaaggat	3	8	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103061650	G	G	103061650	3	3	155	1	0	0	0	0	1	0	0	0	7718	463	16	5	948	5	IL18RAP	2	103061650	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08	5531867	103061650	140137723	42	132297											
RGPD3	653489	broad.mit.edu	37	chr2	107049772	107049772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacattaattaagggcttTcatttgcaaaaaattccaaa	5	6	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107049772	C	C	107049772	1	2	155	0	1	0	0	0	0	0	0	0	13395	1798	62	5		5	RGPD3	2	107049772	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	3988122	107049772	136149601	43	132298											
RGPD4	285190	broad.mit.edu	37	chr2	108488193	108488193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatcctgaaaacactgggCccacattagaatgggataac	8	11	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108488193	A	A	108488193	3	1	155	1	0	0	0	0	1	0	0	0	13396	739	26	3	3811	3	RGPD4	2	108488193	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	1438421	108488193	134711180	44	132299											
CKAP2L	150468	broad.mit.edu	37	chr2	113500284	113500284	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcaaaaataatagtaccTtctgtggttctgtttgagtc	7	6	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113500284	A	A	113500284	3	1	155	1	0	0	0	0	1	0	0	0	3474	1623	56	5	428	5	CKAP2L	2	113500284	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	5012091	113500284	129699089	45	132300											
FAM123C	205147	broad.mit.edu	37	chr2	131520541	131520541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagcagctggcctcgcccgCccagaatgaagcctctgact	12	15	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131520541	T	T	131520541	3	4	155	1	0	0	0	0	1	0	0	0	5470	739	26	4	898	4	FAM123C	2	131520541	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	18020257	131520541	111678832	46	132301											
TUBA3D	113457	broad.mit.edu	37	chr2	132237134	132237134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttagaccagcatcttggcCgggcgcggtggctcacacat	12	13	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132237134	A	A	132237134	1	1	155	0	1	0	0	0	0	0	0	0	16873	667	23	1		1	TUBA3D	2	132237134	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	716593	132237134	110962239	47	132302											
THSD7B	80731	broad.mit.edu	37	chr2	138414680	138414680	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcaagtctttggaacaAtaacgaacgaactgtatggt	10	6	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138414680	G	G	138414680	3	3	155	1	0	0	0	0	1	0	0	0	16003	101	4	5	4327	5	THSD7B	2	138414680	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08	6177546	138414680	104784693	48	132303											
LRP1B	53353	broad.mit.edu	37	chr2	140995668	140995668	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcagaaccataaaacagaGatgcgactcaagaatgttag	8	7	2	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995668	A	A	140995668	1	1	155	0	1	0	0	0	0	0	0	0	9042	957	33	4		4	LRP1B	2	140995668	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	2580988	140995668	102203705	49	132304											
XIRP2	129446	broad.mit.edu	37	chr2	168103381	168103381	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaccgagcctcagagtAcatttggtaagatacccaaa	8	9	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168103381	G	G	168103381	3	3	155	1	0	0	0	0	1	0	0	0	17557	391	14	5	5509	5	XIRP2	2	168103381	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08	27107713	168103381	75095992	50	132305											
XIRP2	129446	broad.mit.edu	37	chr2	168104724	168104724	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaggtccttgaatccaatCaactttaaccctgagaataa	6	9	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168104724	G	G	168104724	3	3	155	1	0	0	0	0	1	0	0	0	17557	816	29	4	6852	4	XIRP2	2	168104724	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	1343	168104724	75094649	51	132306											
DHRS9	10170	broad.mit.edu	37	chr2	169948267	169948267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattttctaaacaaacccGgattaaacatcttcaatggg	5	8	3	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169948267	T	T	169948267	1	4	155	0	1	0	0	0	0	0	0	0	4538	1131	39	1		1	DHRS9	2	169948267	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	1843543	169948267	73251106	52	132307											
TTN	7273	broad.mit.edu	37	chr2	179614019	179614020	+	Frame_Shift_Ins	INS	-	T	T													tctgcttggtgcagctttgaINStttttcacttacatgtctct							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179614020	T	T	179614019	7	5	155	1	0	1	1	0	0	0	0	0	16861	333	12	0	97189	0	TTN	2	179614019	Frame_Shift_Ins	INS	-	TCGA-50-5068-01A-01D-1625-08	9665752	179614019	63585354	53	132308											
TMEFF2	23671	broad.mit.edu	37	chr2	192922312	192922312	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aataagaaaataaaaatgcaGacaatgtcttctgttgcaga	7	5	2	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192922312	T	T	192922312	1	4	155	0	1	0	0	0	0	0	0	0	16137	957	33	3		3	TMEFF2	2	192922312	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	13308293	192922312	50277061	54	132309											
PLCL1	5334	broad.mit.edu	37	chr2	198948501	198948501	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatccttcaaaccaaaaatGtggtggaagaaagaaaaccg	10	7	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198948501	A	A	198948501	3	1	155	1	0	0	0	0	1	0	0	0	12134	1377	48	4	266	4	PLCL1	2	198948501	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	6026189	198948501	44250872	55	132310											
EPHA4	2043	broad.mit.edu	37	chr2	222307631	222307631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcctcactcaggaagtctctCctctgtttgtctgtataacc	7	13	5	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222307631	A	A	222307631	3	1	155	1	0	0	0	0	1	0	0	0	5211	854	30	3	996	3	EPHA4	2	222307631	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	23359130	222307631	20891742	56	132311											
AQP12A	375318	broad.mit.edu	37	chr2	241631275	241631275	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgtgggaaccagccagctCctgctctgtcccctcaggtg	12	14	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241631275	A	A	241631275	1	1	155	0	1	0	0	0	0	0	0	0	826	870	30	3		3	AQP12A	2	241631275	5'UTR	SNP	C	TCGA-50-5068-01A-01D-1625-08	19323644	241631275	1568098	57	132312											
CNTN4	152330	broad.mit.edu	37	chr3	2908581	2908581	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgtggttaccaataccgtGacaaaccacaaggtcctggg	11	10	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2908581	T	T	2908581	2	4	155	1	0	0	0	0	0	0	0	1	3675	1277	45	3		3	CNTN4	3	2908581	Silent	SNP	G	TCGA-50-5068-01A-01D-1625-08		2908581	195113849	58	132313											
RBM5	10181	broad.mit.edu	37	chr3	50145581	50145581	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctatgcccaatatgctcagGtaggtagattttagcagcat	10	8	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50145581	A	A	50145581	5	1	155	1	0	0	0	0	0	0	1	0	13251	1275	44	4	1166	4	RBM5	3	50145581	Splice_Site	SNP	G	TCGA-50-5068-01A-01D-1625-08	47237000	50145581	147876849	59	132314											
RBM5	10181	broad.mit.edu	37	chr3	50154766	50154766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatgggctggcgggaagGctctggcttgggacgaaagt	19	8	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50154766	T	T	50154766	3	4	155	1	0	0	0	0	1	0	0	0	13251	1203	42	3	2366	3	RBM5	3	50154766	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	9185	50154766	147867664	60	132315											
SLC38A3	10991	broad.mit.edu	37	chr3	50257421	50257421	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacccccaaaatcctggtgcGaggggcctggaggccggtgg	16	13	0	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50257421	A	A	50257421	1	1	155	0	1	0	0	0	0	0	0	0	14719	1073	37	4		4	SLC38A3	3	50257421	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	102655	50257421	147765009	61	132316											
EPHA6	285220	broad.mit.edu	37	chr3	96945096	96945096	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactaaaaaagtgtttttttCtctttttacagcttgcagac	5	7	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96945096	A	A	96945096	1	1	155	0	1	0	0	0	0	0	0	0	5213	928	32	3		3	EPHA6	3	96945096	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	46687675	96945096	101077334	62	132317											
CEP97	79598	broad.mit.edu	37	chr3	101451280	101451280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaatcagtggaaattttGtgcttgacactgaatagtcc	9	6	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101451280	T	T	101451280	1	4	155	0	1	0	0	0	0	0	0	0	3293	1392	48	3		3	CEP97	3	101451280	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	4506184	101451280	96571150	63	132318											
C3orf15	89876	broad.mit.edu	37	chr3	119422199	119422199	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgacctcttgcccacggtTgtccttggtcgggtgggggc	15	12	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119422199	A	A	119422199	1	1	155	0	1	0	0	0	0	0	0	0	2231	1827	63	5		5	C3orf15	3	119422199	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	17970919	119422199	78600231	64	132319											
HTT	3064	broad.mit.edu	37	chr4	3122943	3122943	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaccagaacacctgtgtttCtctgtttctaggtttatgaa	8	8	2	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3122943	T	T	3122943	1	4	155	0	1	0	0	0	0	0	0	0	7527	928	32	4		4	HTT	4	3122943	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08		3122943	188031333	65	132320											
CWH43	80157	broad.mit.edu	37	chr4	49018757	49018757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcgaaaacaaccttctcaGtgatgccagcttcccttgca	7	14	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49018757	A	A	49018757	1	1	155	0	1	0	0	0	0	0	0	0	4106	1044	36	4		4	CWH43	4	49018757	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	45895814	49018757	142135519	66	132321											
STAP1	26228	broad.mit.edu	37	chr4	68456587	68456587	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaaatggagactaaccaTttgtttcattgtagcattcc	6	7	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68456587	C	C	68456587	1	2	155	0	1	0	0	0	0	0	0	0	15370	1508	52	5		5	STAP1	4	68456587	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	19437830	68456587	122697689	67	132322											
AMBN	258	broad.mit.edu	37	chr4	71464085	71464085	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgatagacaatgagacagTtgggaagtctgcagagatta	12	5	1	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71464085	C	C	71464085	2	2	155	1	0	0	0	0	0	0	0	1	563	1722	60	5		5	AMBN	4	71464085	Silent	SNP	T	TCGA-50-5068-01A-01D-1625-08	3007498	71464085	119690191	68	132323											
SCARB2	950	broad.mit.edu	37	chr4	77089480	77089480	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagatgaagtaggctgtactCctcctgacatcaaccccacc	7	14	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77089480	A	A	77089480	1	1	155	0	1	0	0	0	0	0	0	0	13994	870	30	3		3	SCARB2	4	77089480	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	5625395	77089480	114064796	69	132324											
INPP4B	8821	broad.mit.edu	37	chr4	143033591	143033591	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaaaagaaaaatgttactCataaattgatgttagttcta	5	3	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143033591	T	T	143033591	1	4	155	0	1	0	0	0	0	0	0	0	7823	841	29	4		4	INPP4B	4	143033591	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	65944111	143033591	48120685	70	132325											
GUCY1A3	2982	broad.mit.edu	37	chr4	156631937	156631937	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgtttactacttcttccCtaagagaaccacctccctga	4	14	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156631937	T	T	156631937	3	4	155	1	0	0	0	0	1	0	0	0	6959	681	24	4	634	4	GUCY1A3	4	156631937	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	13598346	156631937	34522339	71	132326											
TRIML1	339976	broad.mit.edu	37	chr4	189064867	189064867	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttctctgctctctgtgctCccactcatggtgtgcttcat	7	13	4	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189064867	A	A	189064867	1	1	155	0	1	0	0	0	0	0	0	0	16675	870	30	3		3	TRIML1	4	189064867	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	32432930	189064867	2089409	72	132327											
ADCY2	108	broad.mit.edu	37	chr5	7520955	7520955	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acctcctcctcccacaccatCgtgcttagcgtctgcctgtc	6	19	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7520955	T	T	7520955	2	4	155	1	0	0	0	0	0	0	0	1	294	874	31	4		4	ADCY2	5	7520955	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08		7520955	173394305	73	132328											
CDH10	1008	broad.mit.edu	37	chr5	24491685	24491685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttttaaggtttcttacCcagtagaatgatgatgcaga	9	5	1	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24491685	A	A	24491685	3	1	155	1	0	0	0	0	1	0	0	0	3126	637	22	2	498	2	CDH10	5	24491685	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	16970730	24491685	156423575	74	132329											
HCN1	348980	broad.mit.edu	37	chr5	45396782	45396782	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcatagctttgaagagtgCgtatgaatactgctttcccc	8	10	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45396782	T	T	45396782	3	4	155	1	0	0	0	0	1	0	0	0	7062	768	27	4	1650	4	HCN1	5	45396782	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	20905097	45396782	135518478	75	132330											
VCAN	1462	broad.mit.edu	37	chr5	82834850	82834850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttacatcctcagctgagGgctcaggtgagcaactggtc	12	10	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82834850	T	T	82834850	3	4	155	1	0	0	0	0	1	0	0	0	17265	1232	43	2	6054	2	VCAN	5	82834850	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	37438068	82834850	98080410	76	132331											
VCAN	1462	broad.mit.edu	37	chr5	82835757	82835757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgtggcaaaagaagttgGaccactcgtatctcaaacag	9	8	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82835757	T	T	82835757	3	4	155	1	0	0	0	0	1	0	0	0	17265	1174	41	3	6961	3	VCAN	5	82835757	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	907	82835757	98079503	77	132332											
SMAD5	4090	broad.mit.edu	37	chr5	135510366	135510366	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtcactataaatgtgtAtattatgactttaggttata	7	3	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135510366	T	T	135510366	1	4	155	0	1	0	0	0	0	0	0	0	14875	464	16	5		5	SMAD5	5	135510366	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	52674609	135510366	45404894	78	132333											
PGK2	5232	broad.mit.edu	37	chr6	49754110	49754110	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgatatctttaacgatcTtggctccctcttcatcaaac	4	13	5	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49754110	G	G	49754110	3	3	155	1	0	0	0	0	1	0	0	0	11886	1609	56	5	466	5	PGK2	6	49754110	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08		49754110	121360957	79	132334											
DEFB113	245927	broad.mit.edu	37	chr6	49937360	49937360	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgatgcagttacacttgaGtaaagtggggacagatctca	12	7	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49937360	C	C	49937360	1	2	155	0	1	0	0	0	0	0	0	0	4441	1044	36	4		4	DEFB113	6	49937360	5'Flank	SNP	G	TCGA-50-5068-01A-01D-1625-08	183250	49937360	121177707	80	132335											
COL19A1	1310	broad.mit.edu	37	chr6	70881870	70881870	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacagggagagcctggtgcAatggggttgccaggattaga	16	6	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70881870	C	C	70881870	2	2	155	1	0	0	0	0	0	0	0	1	3708	117	5	5		5	COL19A1	6	70881870	Silent	SNP	A	TCGA-50-5068-01A-01D-1625-08	20944510	70881870	100233197	81	132336											
MYO6	4646	broad.mit.edu	37	chr6	76596541	76596541	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggatgaaattaagctctaAtgaagtattatttttacagc	7	4	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76596541	G	G	76596541	1	3	155	0	1	0	0	0	0	0	0	0	10175	116	4	5		5	MYO6	6	76596541	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	5714671	76596541	94518526	82	132337											
SYNE1	23345	broad.mit.edu	37	chr6	152615182	152615182	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccggttcatagaactcctgGgatgcggatgtgctggggtg	16	9	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152615182	C	C	152615182	2	2	155	1	0	0	0	0	0	0	0	1	15564	1219	43	4		4	SYNE1	6	152615182	Silent	SNP	G	TCGA-50-5068-01A-01D-1625-08	76018641	152615182	18499885	83	132338											
UNC93A	54346	broad.mit.edu	37	chr6	167709482	167709482	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtgcaatgggcttgcgtCtcctgttacaggctatgggt	15	8	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167709482	T	T	167709482	1	4	155	0	1	0	0	0	0	0	0	0	17122	928	32	4		4	UNC93A	6	167709482	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	15094300	167709482	3405585	84	132339											
PKD1L1	168507	broad.mit.edu	37	chr7	47942012	47942012	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatgttcttcaccaggggTggctggcagggctcgcacac	13	14	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47942012	G	G	47942012	2	3	155	1	0	0	0	0	0	0	0	1	12059	1683	59	5		5	PKD1L1	7	47942012	Silent	SNP	T	TCGA-50-5068-01A-01D-1625-08		47942012	111196651	85	132340											
CACNA2D1	781	broad.mit.edu	37	chr7	81636981	81636981	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattattattaattttatcAattaacttttaacctttaag	1	4	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81636981	G	G	81636981	1	3	155	0	1	0	0	0	0	0	0	0	2574	145	5	5		5	CACNA2D1	7	81636981	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	33694969	81636981	77501682	86	132341											
PIK3CG	5294	broad.mit.edu	37	chr7	106508507	106508507	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgtcactgacgtcagcaaCgtgcacgacgatgagctgga	13	11	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106508507	T	T	106508507	2	4	155	1	0	0	0	0	0	0	0	1	12011	535	19	4		4	PIK3CG	7	106508507	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	24871526	106508507	52630156	87	132342											
CADPS2	93664	broad.mit.edu	37	chr7	122078589	122078589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaagaaaaaagacagatGttgcataaaataaatactaa	7	3	0	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122078589	T	T	122078589	1	4	155	0	1	0	0	0	0	0	0	0	2597	1392	48	3		3	CADPS2	7	122078589	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	15570082	122078589	37060074	88	132343											
RNF148	378925	broad.mit.edu	37	chr7	122342159	122342159	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaagaattgggcactcTaggtgtaagtctccagacgc	13	8	2	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122342159	A	A	122342159	4	1	155	1	0	0	0	0	0	1	0	0	13560	1530	53	5	275	5	RNF148	7	122342159	Nonsense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	263570	122342159	36796504	89	132344											
PLXNA4	91584	broad.mit.edu	37	chr7	131912379	131912379	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagctgtgaacagccaggCggggggagagaaggaggagg	20	7	0	2	rs142371428	by1000genomes	TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131912379	T	T	131912379	1	4	155	0	1	0	0	0	0	0	0	0	12217	783	27	4		4	PLXNA4	7	131912379	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	9570220	131912379	27226284	90	132345											
MGAM	8972	broad.mit.edu	37	chr7	141740570	141740570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtcgagatggaacttcctGgagacaaaattggacttcac	10	8	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141740570	A	A	141740570	3	1	155	1	0	0	0	0	1	0	0	0	9634	1349	47	4	2500	4	MGAM	7	141740570	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	9828191	141740570	17398093	91	132346											
OR9A2	135924	broad.mit.edu	37	chr7	142723355	142723355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctttgactttgtcattccGaagagtaaagatgaaaggat	9	6	2	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142723355	A	A	142723355	3	1	155	1	0	0	0	0	1	0	0	0	11342	1057	37	4	71	4	OR9A2	7	142723355	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	982785	142723355	16415308	92	132347											
EXTL3	2137	broad.mit.edu	37	chr8	28574075	28574075	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccagagaaggacgatgccGgcctccctcccccgaaggcc	11	18	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28574075	A	A	28574075	3	1	155	1	0	0	0	0	1	0	0	0	5370	1116	39	4	501	4	EXTL3	8	28574075	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08		28574075	117789947	93	132348											
SPAG1	6674	broad.mit.edu	37	chr8	101195563	101195563	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaacctgataatcttaTattaaatatgtctcataaaa	3	5	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101195563	C	C	101195563	1	2	155	0	1	0	0	0	0	0	0	0	15091	1421	49	5		5	SPAG1	8	101195563	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	72621488	101195563	45168459	94	132349											
CSMD3	114788	broad.mit.edu	37	chr8	114326834	114326834	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtaggatgaggatgtccatCatataatgataagtagtcgt	11	4	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114326834	T	T	114326834	3	4	155	1	0	0	0	0	1	0	0	0	3980	826	29	4	11036	4	CSMD3	8	114326834	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	13131271	114326834	32037188	95	132350											
CSMD3	114788	broad.mit.edu	37	chr8	114326898	114326898	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaacaatttgtattctAtttcgttcttctgctattat	4	6	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114326898	G	G	114326898	2	3	155	1	0	0	0	0	0	0	0	1	3980	446	16	5		5	CSMD3	8	114326898	Silent	SNP	A	TCGA-50-5068-01A-01D-1625-08	64	114326898	32037124	96	132351											
FER1L6	654463	broad.mit.edu	37	chr8	124998366	124998366	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcattttttgaagctaccaTgattgaccggaagattggag	11	6	0	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124998366	C	C	124998366	3	2	155	1	0	0	0	0	1	0	0	0	5872	1464	51	5	1511	5	FER1L6	8	124998366	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	10671468	124998366	21365656	97	132352											
NFIB	4781	broad.mit.edu	37	chr9	14313358	14313358	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacgcccgctgcaactccggGccacttctccaagggacggg	13	16	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14313358	C	C	14313358	1	2	155	0	1	0	0	0	0	0	0	0	10466	1218	42	4		4	NFIB	9	14313358	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08		14313358	126900073	98	132353											
RAD23B	5887	broad.mit.edu	37	chr9	110086380	110086380	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaacggtccttcccctcctCaaatacaactctgtatttga	5	13	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110086380	T	T	110086380	1	4	155	0	1	0	0	0	0	0	0	0	13091	841	29	4		4	RAD23B	9	110086380	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	95773022	110086380	31127051	99	132354											
TLR4	7099	broad.mit.edu	37	chr9	120476501	120476501	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtaaagaatttagaagaaGgggtgcctccatttcagctc	10	7	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120476501	C	C	120476501	3	2	155	1	0	0	0	0	1	0	0	0	16076	1000	35	4	2105	4	TLR4	9	120476501	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	10390121	120476501	20736930	100	132355											
OR1L8	138881	broad.mit.edu	37	chr9	125330105	125330105	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaggattcgtatataagAgaaagcaatgcagagaaaac	11	4	0	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125330105	G	G	125330105	3	3	155	1	0	0	0	0	1	0	0	0	11061	304	11	5	281	5	OR1L8	9	125330105	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08	4853604	125330105	15883326	101	132356											
ATP5C1	509	broad.mit.edu	37	chr10	7842009	7842009	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgtcatctcctataagAcagaagaaaagcccatcttt	7	10	4	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7842009	T	T	7842009	3	4	155	1	0	0	0	0	1	0	0	0	1153	275	10	5	614	5	ATP5C1	10	7842009	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08		7842009	127692738	102	132357											
ITGA8	8516	broad.mit.edu	37	chr10	15714661	15714661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagctggagccacttccGtctgcttttctcctgccagt	10	13	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15714661	T	T	15714661	3	4	155	1	0	0	0	0	1	0	0	0	7952	1145	40	3	2523	3	ITGA8	10	15714661	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	7872652	15714661	119820086	103	132358											
MYO3A	53904	broad.mit.edu	37	chr10	26432336	26432336	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaattactatgaagctaTatattattcacagttttaag	6	4	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26432336	C	C	26432336	1	2	155	0	1	0	0	0	0	0	0	0	10170	1421	49	5		5	MYO3A	10	26432336	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	10717675	26432336	109102411	104	132359											
C10orf68	79741	broad.mit.edu	37	chr10	33015700	33015700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgttcatcaagattcaGtgtcaaaactccaaatgcaa	6	8	4	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33015700	T	T	33015700	3	4	155	1	0	0	0	0	1	0	0	0	1624	1029	36	3	551	3	C10orf68	10	33015700	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	6583364	33015700	102519047	105	132360											
ANKRD30A	91074	broad.mit.edu	37	chr10	37438705	37438705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttccaaccccatttagCctgccattgaaatgcaaaac	5	13	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37438705	A	A	37438705	3	1	155	1	0	0	0	0	1	0	0	0	658	753	26	3	1447	3	ANKRD30A	10	37438705	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	4423005	37438705	98096042	106	132361											
FAM21C	253725	broad.mit.edu	37	chr10	46261063	46261063	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttccttaaagtttgatatAggaggacatcctatgttttc	7	7	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46261063	C	C	46261063	1	2	155	0	1	0	0	0	0	0	0	0	5589	435	15	5		5	FAM21C	10	46261063	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	8822358	46261063	89273684	107	132362											
ZNF488	118738	broad.mit.edu	37	chr10	48370489	48370489	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatatctcatggctccttgCtgggccaagccctccagaac	8	16	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48370489	T	T	48370489	1	4	155	0	1	0	0	0	0	0	0	0	18067	812	28	4		4	ZNF488	10	48370489	5'UTR	SNP	C	TCGA-50-5068-01A-01D-1625-08	2109426	48370489	87164258	108	132363											
PCDH15	65217	broad.mit.edu	37	chr10	55996725	55996725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagagagtttcattcagccGcattactaatacttcatgaa	6	8	3	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55996725	T	T	55996725	1	4	155	0	1	0	0	0	0	0	0	0	11605	1102	38	3		3	PCDH15	10	55996725	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	7626236	55996725	79538022	109	132364											
P4HA1	5033	broad.mit.edu	37	chr10	74810876	74810876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcaggtaatccacagCaaccccttttttctttggtg	8	12	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74810876	A	A	74810876	3	1	155	1	0	0	0	0	1	0	0	0	11450	710	25	3	880	3	P4HA1	10	74810876	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	18814151	74810876	60723871	110	132365											
LRIT1	26103	broad.mit.edu	37	chr10	85993891	85993891	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcgggcccagggactccaGtagctccacagcgtagcagt	12	14	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85993891	A	A	85993891	3	1	155	1	0	0	0	0	1	0	0	0	9034	1029	36	4	1046	4	LRIT1	10	85993891	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	11183015	85993891	49540856	111	132366											
PIK3AP1	118788	broad.mit.edu	37	chr10	98369672	98369672	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaagataccagactgtcAcctgccaagctgctcagcag	9	13	3	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98369672	C	C	98369672	1	2	155	0	1	0	0	0	0	0	0	0	12003	174	6	5		5	PIK3AP1	10	98369672	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	12375781	98369672	37165075	112	132367											
CALHM1	255022	broad.mit.edu	37	chr10	105218098	105218098	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaggctgccgttgcccagTgcgctcacgggcacggcagt	15	15	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105218098	G	G	105218098	2	3	155	1	0	0	0	0	0	0	0	1	2608	1683	59	5		5	CALHM1	10	105218098	Silent	SNP	T	TCGA-50-5068-01A-01D-1625-08	6848426	105218098	30316649	113	132368											
C10orf79	80217	broad.mit.edu	37	chr10	105890011	105890011	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttaacttctgctgttgCatcatgttttcataccgttc	6	9	3	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105890011	T	T	105890011	3	4	155	1	0	0	0	0	1	0	0	0	1629	710	25	4	117	4	C10orf79	10	105890011	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	671913	105890011	29644736	114	132369											
ATRNL1	26033	broad.mit.edu	37	chr10	117093795	117093795	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttactgtttcctttagcttGccagtgtaatggacatagca	8	8	0	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117093795	C	C	117093795	3	2	155	1	0	0	0	0	1	0	0	0	1211	1319	46	4	3115	4	ATRNL1	10	117093795	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	11203784	117093795	18440952	115	132370											
FAM175B	23172	broad.mit.edu	37	chr10	126518133	126518133	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttgaattgtcttccaactGacaaatagagttaggatccg	8	7	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126518133	A	A	126518133	1	1	155	0	1	0	0	0	0	0	0	0	5543	1305	45	4		4	FAM175B	10	126518133	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	9424338	126518133	9016614	116	132371											
TMEM80	283232	broad.mit.edu	37	chr11	698734	698734	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctagtggcaggcccacggTatatgtttgctgctttctac	10	10	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	698734	G	G	698734	1	3	155	0	1	0	0	0	0	0	0	0	16327	1653	57	5		5	TMEM80	11	698734	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08		698734	134307782	117	132372											
NUP98	4928	broad.mit.edu	37	chr11	3714304	3714304	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcaactgtggaatctcaTgatatttaataaaataaaaa	5	4	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3714304	C	C	3714304	1	2	155	0	1	0	0	0	0	0	0	0	10868	1479	51	5		5	NUP98	11	3714304	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	3015570	3714304	131292212	118	132373											
OR52N2	390077	broad.mit.edu	37	chr11	5842280	5842280	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagatgctcgtcacaaaGccttcagcacctgcacatct	7	15	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5842280	A	A	5842280	3	1	155	1	0	0	0	0	1	0	0	0	11222	971	34	4	717	4	OR52N2	11	5842280	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	2127976	5842280	129164236	119	132374											
CNGA4	1262	broad.mit.edu	37	chr11	6262815	6262815	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgtgaggccagcctgctgGaggagctggtgctgaagctg	17	9	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6262815	T	T	6262815	4	4	155	1	0	0	0	0	0	1	0	0	3631	1175	41	3	1090	3	CNGA4	11	6262815	Nonsense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	420535	6262815	128743701	120	132375											
NELL1	4745	broad.mit.edu	37	chr11	21250864	21250864	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtatttctctttttctctCaccctggaaacagaacacga	5	11	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21250864	T	T	21250864	1	4	155	0	1	0	0	0	0	0	0	0	10428	841	29	4		4	NELL1	11	21250864	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	14988049	21250864	113755652	121	132376											
ACCSL	390110	broad.mit.edu	37	chr11	44080129	44080129	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacatttgaagaagaacggCtcctctattgccgcttcctg	9	11	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44080129	T	T	44080129	3	4	155	1	0	0	0	0	1	0	0	0	134	797	28	4	1554	4	ACCSL	11	44080129	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	22829265	44080129	90926387	122	132377											
PRDM11	56981	broad.mit.edu	37	chr11	45246107	45246107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatataggccagacccaggGggagggggactggaaggtcc	18	8	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45246107	T	T	45246107	3	4	155	1	0	0	0	0	1	0	0	0	12558	1232	43	2	1210	2	PRDM11	11	45246107	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	1165978	45246107	89760409	123	132378											
C11orf9	745	broad.mit.edu	37	chr11	61548502	61548502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggctaccaggcatacagCcctctttgctgctgggtgcg	14	13	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61548502	A	A	61548502	3	1	155	1	0	0	0	0	1	0	0	0	1683	739	26	3	2661	3	C11orf9	11	61548502	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	16302395	61548502	73458014	124	132379											
MRPL49	740	broad.mit.edu	37	chr11	64892162	64892162	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgatttgaaagcttcacGgagcatcacctcctccccag	9	13	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64892162	C	C	64892162	1	2	155	0	1	0	0	0	0	0	0	0	9907	1131	39	4		4	MRPL49	11	64892162	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	3343660	64892162	70114354	125	132380											
FOLR1	2348	broad.mit.edu	37	chr11	71906939	71906939	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcttccctcctctctacAgggtttaacaagtgcgcagt	9	12	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71906939	C	C	71906939	5	2	155	1	0	0	0	0	0	0	1	0	6039	202	7	5	506	5	FOLR1	11	71906939	Splice_Site	SNP	A	TCGA-50-5068-01A-01D-1625-08	7014777	71906939	63099577	126	132381											
ME3	10873	broad.mit.edu	37	chr11	86267641	86267641	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgacaggccagccccaCggtaggcgtgtacacgattg	14	12	0	1	rs150824447	byFrequency	TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86267641	T	T	86267641	3	4	155	1	0	0	0	0	1	0	0	0	9512	536	19	4	1441	4	ME3	11	86267641	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	14360702	86267641	48738875	127	132382											
FAT3	120114	broad.mit.edu	37	chr11	92539510	92539510	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactaatgattttattacctTtcttcacctttgtccaggtt	4	9	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92539510	A	A	92539510	1	1	155	0	1	0	0	0	0	0	0	0	5748	1856	64	5		5	FAT3	11	92539510	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	6271869	92539510	42467006	128	132383											
MTNR1B	4544	broad.mit.edu	37	chr11	92714459	92714459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcatatagctagtgagtGgcagaaatgcaatctgagtc	11	7	2	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92714459	T	T	92714459	1	4	155	0	1	0	0	0	0	0	0	0	10046	1363	47	2		2	MTNR1B	11	92714459	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	174949	92714459	42292057	129	132384											
ERC1	23085	broad.mit.edu	37	chr12	1137746	1137746	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaggaaaaccaggtaagttCtacgtgtgtttacctttatt	10	6	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1137746	T	T	1137746	1	4	155	0	1	0	0	0	0	0	0	0	5252	928	32	4		4	ERC1	12	1137746	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08		1137746	132714149	130	132385			1	101		2	2	14	N	CC_C	8.734408e-05
ERC1	23085	broad.mit.edu	37	chr12	1137759	1137760	+	Intron	DNP	CC	TG	TG													gtaagttctacgtgtgtttaCctttattggctgaattcatg							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	1137760	TG	TG	1137759	1	4	155	0	1	0	0	0	0	0	0	0	5252	522	18	4		4	ERC1	12	1137759	Intron	DNP	CC	TCGA-50-5068-01A-01D-1625-08	13	1137759	132714136	131	132386			1	101		2	2	14	N	CC_C	8.734408e-05
DYRK4	8798	broad.mit.edu	37	chr12	4705942	4705942	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctctggaaaagttaccTaagtgatagtttttgaggtc	9	5	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4705942	G	G	4705942	1	3	155	0	1	0	0	0	0	0	0	0	4898	1537	53	5		5	DYRK4	12	4705942	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	3568183	4705942	129145953	132	132387											
KCNA1	3736	broad.mit.edu	37	chr12	5021088	5021088	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtcatcctcatctccatcGtcatcttttgcctggagacg	8	13	5	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5021088	A	A	5021088	3	1	155	1	0	0	0	0	1	0	0	0	8071	1145	40	4	546	4	KCNA1	12	5021088	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	315146	5021088	128830807	133	132388											
OVCH1	341350	broad.mit.edu	37	chr12	29624866	29624866	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggcttcttcccctcctgcGattcttctggaaagccactg	8	15	3	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29624866	T	T	29624866	2	4	155	1	0	0	0	0	0	0	0	1	11417	1048	37	3		3	OVCH1	12	29624866	Silent	SNP	G	TCGA-50-5068-01A-01D-1625-08	24603778	29624866	104227029	134	132389											
NELL2	4753	broad.mit.edu	37	chr12	44917237	44917242	+	In_Frame_Del	DEL	CTGTGC	-	-													aaatggtatcattggcacagCtgtgcctcccggtcccacac							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44917242	-	-	44917237	7	5	155	1	0	1	0	1	0	0	0	0	10429	797	28	0	631	0	NELL2	12	44917237	In_Frame_Del	DEL	CTGTGC	TCGA-50-5068-01A-01D-1625-08	15292371	44917237	88934658	135	132390											
KRT80	144501	broad.mit.edu	37	chr12	52567409	52567409	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgagagtatgcctcggccTcctccaggctgcgagccgcg	13	16	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52567409	G	G	52567409	3	3	155	1	0	0	0	0	1	0	0	0	8565	1551	54	5	607	5	KRT80	12	52567409	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	7650172	52567409	81284486	136	132391											
KCNC2	3747	broad.mit.edu	37	chr12	75444672	75444672	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagctcgaagagtatgtccAagcaccctcagacctacaaa	7	13	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75444672	C	C	75444672	2	2	155	1	0	0	0	0	0	0	0	1	8085	117	5	5		5	KCNC2	12	75444672	Silent	SNP	A	TCGA-50-5068-01A-01D-1625-08	22877263	75444672	58407223	137	132392											
NAV3	89795	broad.mit.edu	37	chr12	78513025	78513025	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccttaattagggaaaaccGatgatgccaaagcttctgag	9	9	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78513025	A	A	78513025	3	1	155	1	0	0	0	0	1	0	0	0	10279	1058	37	4	3107	4	NAV3	12	78513025	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	3068353	78513025	55338870	138	132393											
SLC6A15	55117	broad.mit.edu	37	chr12	85255320	85255320	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaacacctgagattgccCtctgataagtgaagcctaat	9	10	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85255320	A	A	85255320	1	1	155	0	1	0	0	0	0	0	0	0	14792	696	24	2		2	SLC6A15	12	85255320	3'UTR	SNP	C	TCGA-50-5068-01A-01D-1625-08	6742295	85255320	48596575	139	132394											
LUM	4060	broad.mit.edu	37	chr12	91502247	91502247	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagcatcctctttcagCcgattgtgctggagatggat	11	9	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91502247	T	T	91502247	2	4	155	1	0	0	0	0	0	0	0	1	9172	726	26	4		4	LUM	12	91502247	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	6246927	91502247	42349648	140	132395											
NTN4	59277	broad.mit.edu	37	chr12	96059768	96059768	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttagcactgttaacacaGaagtcaaaatgcatagaatt	6	6	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96059768	A	A	96059768	1	1	155	0	1	0	0	0	0	0	0	0	10797	957	33	4		4	NTN4	12	96059768	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	4557521	96059768	37792127	141	132396											
RFX4	5992	broad.mit.edu	37	chr12	107082963	107082963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttaggtgaattgcatcCcccccacagggaagaaatga	12	9	0	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107082963	T	T	107082963	1	4	155	0	1	0	0	0	0	0	0	0	13373	638	22	4		4	RFX4	12	107082963	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	11023195	107082963	26768932	142	132397											
ANAPC7	51434	broad.mit.edu	37	chr12	110819758	110819759	+	Intron	INS	-	G	G													tagaagctgtgacagctggaINSgaaaaaaaaaaaaaaaaaaa					rs111406162		TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110819759	G	G	110819758	6	5	155	0	1	1	1	0	0	0	0	0	606	319	11	0		0	ANAPC7	12	110819758	Intron	INS	-	TCGA-50-5068-01A-01D-1625-08	3736795	110819758	23032137	143	132398											
SBNO1	55206	broad.mit.edu	37	chr12	123801796	123801796	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaattgctctatcagcgctCcaaggtaattctaaagtcat	7	9	4	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123801796	G	G	123801796	3	3	155	1	0	0	0	0	1	0	0	0	13974	856	30	4	1322	4	SBNO1	12	123801796	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	12982038	123801796	10050099	144	132399											
TPTE2	93492	broad.mit.edu	37	chr13	20004702	20004702	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcacctgttccaacaaaaTgaaattaaaaagttaggttg	6	7	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20004702	A	A	20004702	1	1	155	0	1	0	0	0	0	0	0	0	16555	1479	51	5		5	TPTE2	13	20004702	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08		20004702	95165176	145	132400											
ACTR10	55860	broad.mit.edu	37	chr14	58701086	58701086	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatatttttgtcacacAggggctatttttggagcatt	8	5	1	0	rs35928266		TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58701086	T	T	58701086	5	4	155	1	0	0	0	0	0	0	1	0	208	202	7	5	1121	5	ACTR10	14	58701086	Splice_Site	SNP	A	TCGA-50-5068-01A-01D-1625-08		58701086	48648454	146	132401											
TSHR	7253	broad.mit.edu	37	chr14	81449235	81449235	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gacaccaaatcaggattaggGaggtaaatgggattaagcca	12	6	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81449235	C	C	81449235	1	2	155	0	1	0	0	0	0	0	0	0	16747	1189	41	4		4	TSHR	14	81449235	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	22748149	81449235	25900305	147	132402											
SERPINA5	5104	broad.mit.edu	37	chr14	95056618	95056618	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggactgagtgagaaaacgcTgaggaagtggcttaagatgt	15	4	0	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95056618	A	A	95056618	3	1	155	1	0	0	0	0	1	0	0	0	14205	1580	55	5	866	5	SERPINA5	14	95056618	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	13607383	95056618	12292922	148	132403											
CHRNA7	1139	broad.mit.edu	37	chr15	32393596	32393596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgggctgcaagatcttGcacccaagattcttgttctg	9	12	3	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32393596	T	T	32393596	1	4	155	0	1	0	0	0	0	0	0	0	3419	1334	46	3		3	CHRNA7	15	32393596	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08		32393596	70137796	149	132404											
SEMA6D	80031	broad.mit.edu	37	chr15	48056281	48056281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtgagagcagaaccccGgcactgcaaagatattctct	10	10	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48056281	T	T	48056281	1	4	155	0	1	0	0	0	0	0	0	0	14155	1131	39	1		1	SEMA6D	15	48056281	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	15662685	48056281	54475111	150	132405											
SECISBP2L	9728	broad.mit.edu	37	chr15	49309002	49309002	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatctattccatcaaacctAgcaagtaaactatcacattt	2	11	3	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49309002	G	G	49309002	1	3	155	0	1	0	0	0	0	0	0	0	14120	435	15	5		5	SECISBP2L	15	49309002	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	1252721	49309002	53222390	151	132406											
SPPL2A	84888	broad.mit.edu	37	chr15	51040396	51040396	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agatctgttacctgagggagGaaactaaaaaagaaaaaatt	9	4	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51040396	C	C	51040396	3	2	155	1	0	0	0	0	1	0	0	0	15206	1174	41	4	1246	4	SPPL2A	15	51040396	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	1731394	51040396	51490996	152	132407											
RASGRF1	5923	broad.mit.edu	37	chr15	79288097	79288097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccatctgcgtgatctcCtccagcgtgatctggttgtc	9	14	4	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79288097	A	A	79288097	3	1	155	1	0	0	0	0	1	0	0	0	13180	680	24	2	793	2	RASGRF1	15	79288097	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	28247701	79288097	23243295	153	132408											
FAM154B	283726	broad.mit.edu	37	chr15	82574861	82574861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaggaagcactgaattcCgtgaaagttttcaaccatgg	10	7	1	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82574861	A	A	82574861	3	1	155	1	0	0	0	0	1	0	0	0	5510	652	23	1	665	1	FAM154B	15	82574861	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	3286764	82574861	19956531	154	132409											
AGBL1	123624	broad.mit.edu	37	chr15	86702096	86702096	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagatttaaaggagtcaAtccaagttgtcttgagcctt	8	6	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86702096	G	G	86702096	1	3	155	0	1	0	0	0	0	0	0	0	375	116	4	5		5	AGBL1	15	86702096	Intron	SNP	A	TCGA-50-5068-01A-01D-1625-08	4127235	86702096	15829296	155	132410											
ARRDC4	91947	broad.mit.edu	37	chr15	98508936	98508936	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtggttatccttctctgCagtatgtccattcaagttta	7	8	2	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98508936	T	T	98508936	1	4	155	0	1	0	0	0	0	0	0	0	989	725	25	4		4	ARRDC4	15	98508936	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	11806840	98508936	4022456	156	132411											
ZG16B	124220	broad.mit.edu	37	chr16	2882201	2882201	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgaggccatctgggtgGtggtggctgatggtactgga	19	6	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2882201	T	T	2882201	1	4	155	0	1	0	0	0	0	0	0	0	17798	1276	44	3		3	ZG16B	16	2882201	3'UTR	SNP	G	TCGA-50-5068-01A-01D-1625-08		2882201	87472552	157	132412											
ACSM5	54988	broad.mit.edu	37	chr16	20440910	20440910	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcatctaccctctagtgcCtgtggtgtttgcatctgggc	13	11	3	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20440910	T	T	20440910	1	4	155	0	1	0	0	0	0	0	0	0	187	696	24	4		4	ACSM5	16	20440910	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	17558709	20440910	69913843	158	132413											
ACSM2A	123876	broad.mit.edu	37	chr16	20488788	20488788	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggtttgctcgggacactGaggagggaggaagttagggg	19	5	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20488788	T	T	20488788	1	4	155	0	1	0	0	0	0	0	0	0	183	1305	45	3		3	ACSM2A	16	20488788	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	47878	20488788	69865965	159	132414											
SLC5A2	6524	broad.mit.edu	37	chr16	31500054	31500054	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacatctacacgcgcctgcGgccacgcgccggcgaccgcg	14	18	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31500054	A	A	31500054	3	1	155	1	0	0	0	0	1	0	0	0	14779	1116	39	4	1279	4	SLC5A2	16	31500054	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	11011266	31500054	58854699	160	132415											
CTU2	348180	broad.mit.edu	37	chr16	88779859	88779859	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctggcctgggatacggtaGgcaggggcctgggtgttcag	18	9	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88779859	C	C	88779859	1	2	155	0	1	0	0	0	0	0	0	0	4081	1015	35	4		4	CTU2	16	88779859	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	57279805	88779859	1574894	161	132416											
WDR81	124997	broad.mit.edu	37	chr17	1634326	1634326	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgccagggggtctgtGgggctgcccggccctcatct	16	13	3	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1634326	T	T	1634326	1	4	155	0	1	0	0	0	0	0	0	0	17457	1363	47	2		2	WDR81	17	1634326	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08		1634326	79560884	162	132417											
CAMKK1	84254	broad.mit.edu	37	chr17	3776587	3776587	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttctctctcagccttctctGagccaggtgggctctttcaa	8	14	5	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3776587	C	C	3776587	1	2	155	0	1	0	0	0	0	0	0	0	2632	1305	45	4		4	CAMKK1	17	3776587	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	2142261	3776587	77418623	163	132418											
VMO1	284013	broad.mit.edu	37	chr17	4689448	4689449	+	Intron	DNP	CC	AA	AA													ccaggacctacgcctgagccCcaaccttgagcgagaacccg							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	4689449	AA	AA	4689448	1	1	155	0	1	0	0	0	0	0	0	0	17304	638	22	2		2	VMO1	17	4689448	Intron	DNP	CC	TCGA-50-5068-01A-01D-1625-08	912861	4689448	76505762	164	132419											
TP53	7157	broad.mit.edu	37	chr17	7578203	7578203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctcatagggcaccaccaCactatgtcgaaaagtgtttc	9	12	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578203	T	T	7578203	3	4	155	1	0	0	0	0	1	0	0	0	16505	478	17	4	648	4	TP53	17	7578203	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	2888755	7578203	73617007	165	132420											
MYH2	4620	broad.mit.edu	37	chr17	10428126	10428126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggcctcagcagccatgCggttggcatggttcagctgg	15	11	3	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10428126	A	A	10428126	3	1	155	1	0	0	0	0	1	0	0	0	10129	768	27	3	934	3	MYH2	17	10428126	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	2849923	10428126	70767084	166	132421											
NF1	4763	broad.mit.edu	37	chr17	29661894	29661894	+	Frame_Shift_Del	DEL	C	-	-													tttgtttggaatacatgactCcatggctgtcaaatctagtt							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29661894	-	-	29661894	7	5	155	1	0	1	0	1	0	0	0	0	10451	855	30	0	6070	0	NF1	17	29661894	Frame_Shift_Del	DEL	C	TCGA-50-5068-01A-01D-1625-08	19233768	29661894	51533316	167	132422											
ENPP7	339221	broad.mit.edu	37	chr17	77709193	77709193	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccgaccacggcatgacgAccgtggacaaacgggctggc	13	14	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77709193	T	T	77709193	3	4	155	1	0	0	0	0	1	0	0	0	5177	275	10	5	761	5	ENPP7	17	77709193	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08	48047299	77709193	3486017	168	132423											
AZI1	22994	broad.mit.edu	37	chr17	79166468	79166468	+	Intron	DEL	G	-	-													tgggagaggtcagcgggtgaGggggcgggggggaggggtca					rs3833101		TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79166468	-	-	79166468	6	5	155	0	1	1	0	1	0	0	0	0	1245	1015	35	0		0	AZI1	17	79166468	Intron	DEL	G	TCGA-50-5068-01A-01D-1625-08	1457275	79166468	2028742	169	132424											
LAMA1	284217	broad.mit.edu	37	chr18	6972983	6972983	+	Intron	DEL	C	-	-													tacaggcgtgagccaccacgCccggcccatgacttttatat							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6972983	-	-	6972983	6	5	155	0	1	1	0	1	0	0	0	0	8677	754	26	0		0	LAMA1	18	6972983	Intron	DEL	C	TCGA-50-5068-01A-01D-1625-08		6972983	71104265	170	132425											
DSG2	1829	broad.mit.edu	37	chr18	29126289	29126289	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtagatcagccttatgcTaatgaaggtacagttgtggt	12	5	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29126289	C	C	29126289	2	2	155	1	0	0	0	0	0	0	0	1	4817	1509	53	5		5	DSG2	18	29126289	Silent	SNP	T	TCGA-50-5068-01A-01D-1625-08	22153306	29126289	48950959	171	132426											
DTNA	1837	broad.mit.edu	37	chr18	32428228	32428228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaatctttctcagttgccTaacggtctccttcttgcttt	6	12	4	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32428228	C	C	32428228	1	2	155	0	1	0	0	0	0	0	0	0	4828	1537	53	5		5	DTNA	18	32428228	Intron	SNP	T	TCGA-50-5068-01A-01D-1625-08	3301939	32428228	45649020	172	132427											
NETO1	81832	broad.mit.edu	37	chr18	70461611	70461611	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taccaacctggtaatggtttCaaagctccaaggtccttaaa	7	10	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70461611	G	G	70461611	3	3	155	1	0	0	0	0	1	0	0	0	10434	825	29	4	1127	4	NETO1	18	70461611	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	38033383	70461611	7615637	173	132428											
PTBP1	5725	broad.mit.edu	37	chr19	803637	803637	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaactcggcttctgcagGtaaggccgggactcggccca	13	14	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	803637	T	T	803637	5	4	155	1	0	0	0	0	0	0	1	0	12831	1275	44	3	126	3	PTBP1	19	803637	Splice_Site	SNP	G	TCGA-50-5068-01A-01D-1625-08		803637	58325346	174	132429											
ZNF177	7730	broad.mit.edu	37	chr19	9491816	9491816	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aactttcactgaccctttgtCccttcagaactgtgtcagaa	6	12	3	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9491816	T	T	9491816	1	4	155	0	1	0	0	0	0	0	0	0	17872	855	30	4		4	ZNF177	19	9491816	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	8688179	9491816	49637167	175	132430											
KEAP1	9817	broad.mit.edu	37	chr19	10602310	10602310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgacggcatagatgtggCcatcgatgacccccaccccg	11	17	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602310	A	A	10602310	3	1	155	1	0	0	0	0	1	0	0	0	8211	739	26	3	622	3	KEAP1	19	10602310	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	1110494	10602310	48526673	176	132431											
ZNF709	163051	broad.mit.edu	37	chr19	12575444	12575444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattcgaacagaactggaaCaactgaaggctttaccacat	8	9	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12575444	A	A	12575444	3	1	155	1	0	0	0	0	1	0	0	0	18241	478	17	3	637	3	ZNF709	19	12575444	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	1973134	12575444	46553539	177	132432											
MAP1S	55201	broad.mit.edu	37	chr19	17835735	17835735	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtagctagttgagcactgGgctggtcgtggggtgaggac	18	7	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17835735	A	A	17835735	1	1	155	0	1	0	0	0	0	0	0	0	9326	1247	43	4		4	MAP1S	19	17835735	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	5260291	17835735	41293248	178	132433											
CCNE1	898	broad.mit.edu	37	chr19	30313325	30313325	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatccagttgtcagcctcaGattaagcccacgatgtcttc	7	13	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30313325	A	A	30313325	1	1	155	0	1	0	0	0	0	0	0	0	2950	957	33	4		4	CCNE1	19	30313325	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	12477590	30313325	28815658	179	132434											
FFAR3	2865	broad.mit.edu	37	chr19	35849909	35849909	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctggccctggtggtcttCgtgggcaagctgcagcgccg	16	13	1	0	rs148149328		TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35849909	T	T	35849909	2	4	155	1	0	0	0	0	0	0	0	1	5886	883	31	4		4	FFAR3	19	35849909	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	5536584	35849909	23279074	180	132435											
NPHS1	4868	broad.mit.edu	37	chr19	36322264	36322264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcgttcctgactcggtcCtcttccgaccttccaggatg	8	14	1	1	rs115670171	by1000genomes	TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36322264	A	A	36322264	3	1	155	1	0	0	0	0	1	0	0	0	10677	680	24	2	420	2	NPHS1	19	36322264	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	472355	36322264	22806719	181	132436											
RYR1	6261	broad.mit.edu	37	chr19	38934235	38934235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaggacgctcctgtatgGccatgccatcctgctccggc	10	16	0	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38934235	A	A	38934235	3	1	155	1	0	0	0	0	1	0	0	0	13879	1203	42	4	322	4	RYR1	19	38934235	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08	2611971	38934235	20194748	182	132437											
PSG8	440533	broad.mit.edu	37	chr19	43268074	43268074	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggaatcactcacgatataAggtgaaggtgaaatgtccag	12	6	2	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43268074	T	T	43268074	3	4	155	1	0	0	0	0	1	0	0	0	12767	69	3	5	893	5	PSG8	19	43268074	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08	4333839	43268074	15860909	183	132438											
KLK12	43849	broad.mit.edu	37	chr19	51532662	51532662	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccccacagacccccaggAcaccagaccttgaaggactc	10	17	0	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51532662	G	G	51532662	3	3	155	1	0	0	0	0	1	0	0	0	8471	275	10	5	169	5	KLK12	19	51532662	Missense_Mutation	SNP	A	TCGA-50-5068-01A-01D-1625-08	8264588	51532662	7596321	184	132439											
ETFB	2109	broad.mit.edu	37	chr19	51853661	51853661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcctgaatggggagagaCagaagactgtatgacaatca	13	6	1	5			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51853661	A	A	51853661	1	1	155	0	1	0	0	0	0	0	0	0	5312	493	17	3		3	ETFB	19	51853661	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	320999	51853661	7275322	185	132440											
ZNF813	126017	broad.mit.edu	37	chr19	53994017	53994017	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctcaatttcaacatcCcaaagaatttcttgtaggcc	5	12	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53994017	T	T	53994017	2	4	155	1	0	0	0	0	0	0	0	1	18304	610	22	4		4	ZNF813	19	53994017	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	2140356	53994017	5134966	186	132441											
ZIM2	23619	broad.mit.edu	37	chr19	57286129	57286129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaggtatgagggtcggCcgaaacatttcccacatagc	13	9	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57286129	A	A	57286129	3	1	155	1	0	0	0	0	1	0	0	0	17810	739	26	3	76	3	ZIM2	19	57286129	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	3292112	57286129	1842854	187	132442											
C20orf196	149840	broad.mit.edu	37	chr20	5843983	5843983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtcttacagaggcattcCagggacacccacttctaccc	7	16	2	1	rs138963473		TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5843983	A	A	5843983	2	1	155	1	0	0	0	0	0	0	0	1	2123	581	21	2		2	C20orf196	20	5843983	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08		5843983	57181537	188	132443											
SEL1L2	80343	broad.mit.edu	37	chr20	13899778	13899778	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgcttttgtactatacatGaacaaacaaaaaataaaaac	3	7	0	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13899778	A	A	13899778	1	1	155	0	1	0	0	0	0	0	0	0	14124	1305	45	4		4	SEL1L2	20	13899778	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	8055795	13899778	49125742	189	132444											
CD93	22918	broad.mit.edu	37	chr20	23064979	23064981	+	In_Frame_Del	DEL	CTT	-	-													gcattctggggcttcttctcCttcttctcctccctcttcgc							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23064981	-	-	23064979	7	5	155	1	0	1	0	1	0	0	0	0	3077	680	24	0	115	0	CD93	20	23064979	In_Frame_Del	DEL	CTT	TCGA-50-5068-01A-01D-1625-08	9165201	23064979	39960541	190	132445											
DEFB123	245936	broad.mit.edu	37	chr20	30037860	30037860	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagatgctggaatctttaTggcaaatgccgttacagatg	10	7	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30037860	C	C	30037860	2	2	155	1	0	0	0	0	0	0	0	1	4448	1471	51	5		5	DEFB123	20	30037860	Silent	SNP	T	TCGA-50-5068-01A-01D-1625-08	6972881	30037860	32987660	191	132446											
TOP1	7150	broad.mit.edu	37	chr20	39741460	39741460	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatacgagactgctcggcgGctgaaaaaatgtgtggacaa	12	7	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39741460	A	A	39741460	2	1	155	1	0	0	0	0	0	0	0	1	16487	1190	42	4		4	TOP1	20	39741460	Silent	SNP	G	TCGA-50-5068-01A-01D-1625-08	9703600	39741460	23284060	192	132447											
SULF2	55959	broad.mit.edu	37	chr20	46307439	46307439	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgattcaccggccgctccgTgtccagcagcttgaggatgg	13	14	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46307439	G	G	46307439	3	3	155	1	0	0	0	0	1	0	0	0	15489	1696	59	5	1494	5	SULF2	20	46307439	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	6565979	46307439	16718081	193	132448											
ATP5E	514	broad.mit.edu	37	chr20	57605535	57605535	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattatcaatattccagccaGacagctgttactgtgttttc	6	9	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57605535	A	A	57605535	1	1	155	0	1	0	0	0	0	0	0	0	1155	957	33	4		4	ATP5E	20	57605535	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	11298096	57605535	5419985	194	132449											
ZNF831	128611	broad.mit.edu	37	chr20	57771017	57771017	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttggagggcaaagatgtctCgtgggaacagcaagcagaga	15	7	1	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57771017	T	T	57771017	3	4	155	1	0	0	0	0	1	0	0	0	18314	884	31	4	3838	4	ZNF831	20	57771017	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	165482	57771017	5254503	195	132450											
PRPF6	24148	broad.mit.edu	37	chr20	62664298	62664298	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaactggcagaagaagatCggggacatccttaggctggt	14	9	0	3			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62664298	T	T	62664298	2	4	155	1	0	0	0	0	0	0	0	1	12680	874	31	4		4	PRPF6	20	62664298	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	4893281	62664298	361222	196	132451											
USP25	29761	broad.mit.edu	37	chr21	17205774	17205774	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacgatttgaaaaagaactaGaagaatgggatgcacaactt	9	5	0	4			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17205774	C	C	17205774	3	2	155	1	0	0	0	0	1	0	0	0	17182	943	33	4	2167	4	USP25	21	17205774	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08		17205774	30924121	197	132452											
ADAMTS1	9510	broad.mit.edu	37	chr21	28213507	28213507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagcaatccagaacccaCattaaagtatggatcatggc	9	9	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28213507	A	A	28213507	1	1	155	0	1	0	0	0	0	0	0	0	255	493	17	3		3	ADAMTS1	21	28213507	Intron	SNP	C	TCGA-50-5068-01A-01D-1625-08	11007733	28213507	19916388	198	132453											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31913900	31913900	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggtaggtattttctctaCattgagaaaagtgttcgcct	9	6	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31913900	A	A	31913900	1	1	155	0	1	0	0	0	0	0	0	0	8604	493	17	3		3	KRTAP19-6	21	31913900	3'UTR	SNP	C	TCGA-50-5068-01A-01D-1625-08	3700393	31913900	16215995	199	132454											
COL18A1	80781	broad.mit.edu	37	chr21	46895522	46895523	+	Intron	DEL	AT	-	-													tcccagcagtggggtgacacAtgtgcacacgcaggtgtggc					rs145698477		TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46895523	-	-	46895522	6	5	155	0	1	1	0	1	0	0	0	0	3707	232	8	0		0	COL18A1	21	46895522	Intron	DEL	AT	TCGA-50-5068-01A-01D-1625-08	14981622	46895522	1234373	200	132455											
CECR2	27443	broad.mit.edu	37	chr22	18022446	18022446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcccaggctcttcggGgggtgcagggaggggactcc	17	13	1	0			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18022446	T	T	18022446	3	4	155	1	0	0	0	0	1	0	0	0	3236	1232	43	2	2608	2	CECR2	22	18022446	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08		18022446	33282120	201	132456											
FRMPD4	9758	broad.mit.edu	37	chrX	12736241	12736241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtatgtggccactgaagGtgggatggctgaaaaaagtg	16	4	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12736241	T	T	12736241	3	4	155	1	0	0	0	0	1	0	0	0	6119	1261	44	3	3358	3	FRMPD4	23	12736241	Missense_Mutation	SNP	G	TCGA-50-5068-01A-01D-1625-08		12736241	142534319	202	132457											
FAM47C	442444	broad.mit.edu	37	chrX	37028222	37028222	+	Frame_Shift_Del	DEL	C	-	-													gcctcccgatactggagtgtCccatctctgcccagagcctc							TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37028222	-	-	37028222	7	5	155	1	0	1	0	1	0	0	0	0	5622	855	30	0	1741	0	FAM47C	23	37028222	Frame_Shift_Del	DEL	C	TCGA-50-5068-01A-01D-1625-08	24291981	37028222	118242338	203	132458											
ABCB7	22	broad.mit.edu	37	chrX	74288884	74288884	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccgaaggctttccaggctCacatcttgtatattttgacc	7	12	2	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74288884	A	A	74288884	2	1	155	1	0	0	0	0	0	0	0	1	46	813	29	3		3	ABCB7	23	74288884	Silent	SNP	C	TCGA-50-5068-01A-01D-1625-08	37260662	74288884	80981676	204	132459											
TBX22	50945	broad.mit.edu	37	chrX	79279693	79279693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatagaatggtactctatGcccaggctagggccagggat	12	11	1	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79279693	T	T	79279693	1	4	155	0	1	0	0	0	0	0	0	0	15780	1334	46	3		3	TBX22	23	79279693	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	4990809	79279693	75990867	205	132460											
TIMM8A	1678	broad.mit.edu	37	chrX	100601582	100601582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtatcaatgaagcgctcaaCgcagttcacaaaacaggcct	8	11	3	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100601582	T	T	100601582	3	4	155	1	0	0	0	0	1	0	0	0	16037	536	19	4	98	4	TIMM8A	23	100601582	Missense_Mutation	SNP	C	TCGA-50-5068-01A-01D-1625-08	21321889	100601582	54668978	206	132461											
COL4A5	1287	broad.mit.edu	37	chrX	107935877	107935877	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatttattacctatgaaagGctggcaagtttccttgaaag	8	6	0	2			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107935877	C	C	107935877	1	2	155	0	1	0	0	0	0	0	0	0	3726	1218	42	4		4	COL4A5	23	107935877	Intron	SNP	G	TCGA-50-5068-01A-01D-1625-08	7334295	107935877	47334683	207	132462											
USP26	83844	broad.mit.edu	37	chrX	132161641	132161641	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctgccttggatttcttgTattctacagaattattttct	5	7	4	1			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132161641	C	C	132161641	3	2	155	1	0	0	0	0	1	0	0	0	17183	1638	57	5	2136	5	USP26	23	132161641	Missense_Mutation	SNP	T	TCGA-50-5068-01A-01D-1625-08	24225764	132161641	23108919	208	132463											
TPRG1L	127262	broad.mit.edu	37	chr1	3544384	3544384	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctcattttagagttgattCcctaagttgtcagaaattct	6	8	3	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3544384	T	T	3544384	1	4	156	0	1	0	0	0	0	0	0	0	16543	870	30	4		4	TPRG1L	1	3544384	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08		3544384	245706237	1	132464											
RNF207	388591	broad.mit.edu	37	chr1	6267418	6267418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggggtatcagaatctcGgggcctgggcttctctgcag	16	9	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6267418	T	T	6267418	1	4	156	0	1	0	0	0	0	0	0	0	13585	1131	39	1		1	RNF207	1	6267418	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	2723034	6267418	242983203	2	132465											
MTOR	2475	broad.mit.edu	37	chr1	11293424	11293424	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttcttttccaccctatcTccgctatggaaaaagtagct	6	11	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11293424	A	A	11293424	1	1	156	0	1	0	0	0	0	0	0	0	10048	1566	54	5		5	MTOR	1	11293424	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	5026006	11293424	237957197	3	132466											
MFN2	9927	broad.mit.edu	37	chr1	12065639	12065639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacgggccaacttgactggGgtgtggttcccaggcaaagc	14	11	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12065639	T	T	12065639	1	4	156	0	1	0	0	0	0	0	0	0	9617	1247	43	2		2	MFN2	1	12065639	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	772215	12065639	237184982	4	132467											
TNFRSF8	943	broad.mit.edu	37	chr1	12183326	12183326	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcgctggttctcagatgttAcgtcccctctgcagatatgg	12	11	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12183326	T	T	12183326	1	4	156	0	1	0	0	0	0	0	0	0	16422	406	14	5		5	TNFRSF8	1	12183326	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	117687	12183326	237067295	5	132468											
CROCC	9696	broad.mit.edu	37	chr1	17185534	17185534	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccaccctttcctcttctgtCctgcattaggaaatatgatt	5	12	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17185534	T	T	17185534	1	4	156	0	1	0	0	0	0	0	0	0	3925	870	30	4		4	CROCC	1	17185534	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	5002208	17185534	232065087	6	132469											
PADI1	29943	broad.mit.edu	37	chr1	17552487	17552487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtggatcctgttggtgGggtggagaaagggcgatctc	19	5	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17552487	T	T	17552487	1	4	156	0	1	0	0	0	0	0	0	0	11471	1247	43	2		2	PADI1	1	17552487	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	366953	17552487	231698134	7	132470											
CLSPN	63967	broad.mit.edu	37	chr1	36227769	36227769	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctctccaagaaaagaggAaaggaaatagtaagcatgag	11	6	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36227769	G	G	36227769	1	3	156	0	1	0	0	0	0	0	0	0	3592	261	9	5		5	CLSPN	1	36227769	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	18675282	36227769	213022852	8	132471											
FOXJ3	22887	broad.mit.edu	37	chr1	42647570	42647570	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacactcacTctctctctctctcttacctg	1	19	5	0	rs112546829		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42647570	A	A	42647570	1	1	156	0	1	0	0	0	0	0	0	0	6073	1566	54	5		5	FOXJ3	1	42647570	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	6419801	42647570	206603051	9	132472											
PTPRF	5792	broad.mit.edu	37	chr1	44069145	44069145	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccgttactgttgctgcctAtaccaccaagggggatggtg	12	11	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44069145	C	C	44069145	3	2	156	1	0	0	0	0	1	0	0	0	12909	449	16	5	2449	5	PTPRF	1	44069145	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	1421575	44069145	205181476	10	132473											
KDM4A	9682	broad.mit.edu	37	chr1	44160367	44160367	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaatcactggttttcttcCcctgtgctacagaaatgtat	7	10	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44160367	G	G	44160367	1	3	156	0	1	0	0	0	0	0	0	0	8198	638	22	4		4	KDM4A	1	44160367	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	91222	44160367	205090254	11	132474											
MUTYH	4595	broad.mit.edu	37	chr1	45797267	45797267	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcaggggtcaggcctcagCtgccgattccctccattctc	11	15	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45797267	T	T	45797267	1	4	156	0	1	0	0	0	0	0	0	0	10087	812	28	4		4	MUTYH	1	45797267	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	1636900	45797267	203453354	12	132475											
USP1	7398	broad.mit.edu	37	chr1	62910726	62910726	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attatccaaggaacaccagtCattggaagagaaccagagac	9	9	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62910726	G	G	62910726	4	3	156	1	0	0	0	0	0	1	0	0	17166	838	29	4	893	4	USP1	1	62910726	Nonsense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	17113459	62910726	186339895	13	132476											
JAK1	3716	broad.mit.edu	37	chr1	65300251	65300251	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttattcatgcttcttatttTaaaagtgcttcaaatccttc	4	8	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65300251	A	A	65300251	3	1	156	1	0	0	0	0	1	0	0	0	8007	1751	61	5	9	5	JAK1	1	65300251	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	2389525	65300251	183950370	14	132477											
WLS	79971	broad.mit.edu	37	chr1	68611415	68611415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttggcctctaattttgcCcagagatcctacatgagaat	8	9	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68611415	A	A	68611415	1	1	156	0	1	0	0	0	0	0	0	0	17503	638	22	2		2	WLS	1	68611415	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	3311164	68611415	180639206	15	132478											
ELTD1	64123	broad.mit.edu	37	chr1	79403965	79403965	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttcttttatggatctgatCtgagaaaaaatgagtccaga	10	5	3	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79403965	G	G	79403965	5	3	156	1	0	0	0	0	0	0	1	0	5126	927	32	4	1720	4	ELTD1	1	79403965	Splice_Site	SNP	C	TCGA-50-5072-01A-21D-1855-08	10792550	79403965	169846656	16	132479											
COL11A1	1301	broad.mit.edu	37	chr1	103431093	103431093	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggccggtcttgccttgaaAtccctaaggaggcaaagtat	12	9	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103431093	T	T	103431093	3	4	156	1	0	0	0	0	1	0	0	0	3699	101	4	5	2674	5	COL11A1	1	103431093	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	24027128	103431093	145819528	17	132480											
PDE4DIP	9659	broad.mit.edu	37	chr1	144917925	144917925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatactgtaggagctccCgaaattcctgagaccaaaaa	8	11	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144917925	A	A	144917925	3	1	156	1	0	0	0	0	1	0	0	0	11737	652	23	1	5825	1	PDE4DIP	1	144917925	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	41486832	144917925	104332696	18	132481											
NBPF9	400818	broad.mit.edu	37	chr1	145075501	145075501	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgccaacccctctcaggCgtcgggatcttcagtccggg	12	16	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145075501	T	T	145075501	1	4	156	0	1	0	0	0	0	0	0	0	10294	783	27	4		4	NBPF9	1	145075501	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	157576	145075501	104175120	19	132482											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858886	149858886	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttctgttaccaaagaaaaCcgaaagccacaaagccaaaa	6	11	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149858886	T	T	149858886	3	4	156	1	0	0	0	0	1	0	0	0	7245	507	18	4	364	4	HIST2H2AC	1	149858886	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	4783385	149858886	99391735	20	132483											
TCHH	7062	broad.mit.edu	37	chr1	152079909	152079909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggatgtactcatagagaggGctggagcgcactgggacact	15	8	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152079909	C	C	152079909	3	2	156	1	0	0	0	0	1	0	0	0	15822	1194	42	4	51	4	TCHH	1	152079909	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2221023	152079909	97170712	21	132484											
ADAR	103	broad.mit.edu	37	chr1	154557539	154557539	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctagagaaacaaaagcactCattattcacctgggacctgt	7	11	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154557539	A	A	154557539	1	1	156	0	1	0	0	0	0	0	0	0	281	841	29	3		3	ADAR	1	154557539	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	2477630	154557539	94693082	22	132485											
SLC25A44	9673	broad.mit.edu	37	chr1	156180134	156180134	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagaatcatctcagccaCaccttccaccattgtcattg	6	15	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156180134	T	T	156180134	3	4	156	1	0	0	0	0	1	0	0	0	14623	478	17	4	867	4	SLC25A44	1	156180134	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	1622595	156180134	93070487	23	132486											
FCRL2	79368	broad.mit.edu	37	chr1	157738451	157738451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcagtcacctgtcccccGggggcccggatctccaagct	10	18	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157738451	T	T	157738451	2	4	156	1	0	0	0	0	0	0	0	1	5852	1103	39	1		1	FCRL2	1	157738451	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	1558317	157738451	91512170	24	132487											
CD5L	922	broad.mit.edu	37	chr1	157805889	157805889	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggcctttctgttccacctCcacccgcccttcacagcggt	7	19	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157805889	A	A	157805889	4	1	156	1	0	0	0	0	0	1	0	0	3057	864	30	3	947	3	CD5L	1	157805889	Nonsense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	67438	157805889	91444732	25	132488											
SDHC	6391	broad.mit.edu	37	chr1	161326722	161326722	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttactgggtttagtgctgttCttttttttttttcccaagag	8	6	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161326722	T	T	161326722	1	4	156	0	1	0	0	0	0	0	0	0	14079	928	32	4		4	SDHC	1	161326722	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	3520833	161326722	87923899	26	132489											
OLFML2B	25903	broad.mit.edu	37	chr1	161987083	161987083	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctttcatagaataggatgGgttaagtctagtcagcacat	9	8	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161987083	A	A	161987083	1	1	156	0	1	0	0	0	0	0	0	0	10953	1247	43	4		4	OLFML2B	1	161987083	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	660361	161987083	87263538	27	132490											
RXRG	6258	broad.mit.edu	37	chr1	165398047	165398047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtgatgactcgatatGgagagcccagggcattgagg	16	7	0	5			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165398047	T	T	165398047	3	4	156	1	0	0	0	0	1	0	0	0	13876	1348	47	2	1221	2	RXRG	1	165398047	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	3410964	165398047	83852574	28	132491											
DPT	1805	broad.mit.edu	37	chr1	168683502	168683502	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtagcgacaacagtaaaActgccactcccgatccagca	8	14	0	0	rs149928380	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168683502	T	T	168683502	3	4	156	1	0	0	0	0	1	0	0	0	4779	43	2	5	229	5	DPT	1	168683502	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	3285455	168683502	80567119	29	132492											
CACNA1E	777	broad.mit.edu	37	chr1	181725171	181725171	+	Frame_Shift_Del	DEL	A	-	-													gccatgaattccactacgacAacattatctgggccctgctg							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	181725171	-	-	181725171	7	5	156	1	0	1	0	1	0	0	0	0	2568	130	5	0	4183	0	CACNA1E	1	181725171	Frame_Shift_Del	DEL	A	TCGA-50-5072-01A-21D-1855-08	13041669	181725171	67525450	30	132493											
NPL	80896	broad.mit.edu	37	chr1	182791305	182791305	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttggaggcttttgaacaaAaggacttctctttagccctg	10	8	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182791305	G	G	182791305	3	3	156	1	0	0	0	0	1	0	0	0	10680	15	1	5	743	5	NPL	1	182791305	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	1066134	182791305	66459316	31	132494											
GLT25D2	23127	broad.mit.edu	37	chr1	183923911	183923911	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctacctcatcaaatcccatCttgtctggatatttagggac	6	12	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183923911	G	G	183923911	3	3	156	1	0	0	0	0	1	0	0	0	6531	912	32	4	890	4	GLT25D2	1	183923911	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	1132606	183923911	65326710	32	132495											
CFH	3075	broad.mit.edu	37	chr1	196658660	196658660	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attactcctattactgtgatGaacattttgagactccgtca	6	9	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196658660	A	A	196658660	3	1	156	1	0	0	0	0	1	0	0	0	3313	1291	45	4	1105	4	CFH	1	196658660	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	12734749	196658660	52591961	33	132496											
ASPM	259266	broad.mit.edu	37	chr1	197087151	197087151	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaatgtaaattaaacactCacttaagaccttaaattatt	3	7	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197087151	T	T	197087151	1	4	156	0	1	0	0	0	0	0	0	0	1060	841	29	4		4	ASPM	1	197087151	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	428491	197087151	52163470	34	132497											
CRB1	23418	broad.mit.edu	37	chr1	197404356	197404357	+	Nonsense_Mutation	DNP	GG	TT	TT													ggtttcattaataaacctcaGgaagagcaatttctcaaaat							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	197404357	TT	TT	197404356	4	4	156	1	0	0	0	0	0	1	0	0	3880	991	35	2	3397	2	CRB1	1	197404356	Nonsense_Mutation	DNP	GG	TCGA-50-5072-01A-21D-1855-08	317205	197404356	51846265	35	132498											
IPO9	55705	broad.mit.edu	37	chr1	201840001	201840001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaggtaagagagcagtgGggagtgggcttcctactccc	15	9	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201840001	T	T	201840001	1	4	156	0	1	0	0	0	0	0	0	0	7869	1247	43	2		2	IPO9	1	201840001	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	4435645	201840001	47410620	36	132499											
OPTC	26254	broad.mit.edu	37	chr1	203467938	203467938	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcttcaaccgcatcagccGtatcagggccgaagacttca	9	14	4	1	rs114769450	byFrequency;by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203467938	A	A	203467938	3	1	156	1	0	0	0	0	1	0	0	0	10982	1145	40	4	510	4	OPTC	1	203467938	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1627937	203467938	45782683	37	132500											
NFASC	23114	broad.mit.edu	37	chr1	204943942	204943942	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgaaaaccaagtccgcctgGaggtcaaaggtaaaggagag	13	8	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204943942	A	A	204943942	3	1	156	1	0	0	0	0	1	0	0	0	10454	1175	41	4	1650	4	NFASC	1	204943942	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1476004	204943942	44306679	38	132501											
LGTN	1939	broad.mit.edu	37	chr1	206772426	206772426	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatcgttcggacctcactgCcctccagaaagctccccttc	7	18	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206772426	T	T	206772426	3	4	156	1	0	0	0	0	1	0	0	0	8832	739	26	4	551	4	LGTN	1	206772426	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	1828484	206772426	42478195	39	132502											
DYRK3	8444	broad.mit.edu	37	chr1	206821060	206821060	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaaatttactttgtaggtCcaaatgccaagaaaagacat	7	7	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206821060	T	T	206821060	3	4	156	1	0	0	0	0	1	0	0	0	4897	855	30	4	548	4	DYRK3	1	206821060	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	48634	206821060	42429561	40	132503											
RPS6KC1	26750	broad.mit.edu	37	chr1	213445938	213445939	+	Frame_Shift_Ins	INS	-	T	T													aagatatcaaatctcatccaINSttttttacccctgtggattg							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213445939	T	T	213445938	7	5	156	1	0	1	1	0	0	0	0	0	13769	204	8	0	3220	0	RPS6KC1	1	213445938	Frame_Shift_Ins	INS	-	TCGA-50-5072-01A-21D-1855-08	6624878	213445938	35804683	41	132504											
USH2A	7399	broad.mit.edu	37	chr1	216019063	216019063	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacccccttccctcccacaCcggaaattttataatggagg	6	16	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216019063	T	T	216019063	1	4	156	0	1	0	0	0	0	0	0	0	17162	522	18	4		4	USH2A	1	216019063	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	2573125	216019063	33231558	42	132505											
EPRS	2058	broad.mit.edu	37	chr1	220219803	220219803	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggaggaccccgcgaaaggAagaagatgcaacgtgtgcgc	15	10	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220219803	C	C	220219803	1	2	156	0	1	0	0	0	0	0	0	0	5233	261	9	5		5	EPRS	1	220219803	5'UTR	SNP	A	TCGA-50-5072-01A-21D-1855-08	4200740	220219803	29030818	43	132506											
HLX	3142	broad.mit.edu	37	chr1	221055563	221055563	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacgtacaaaaggaagcgttCatggtcgcgcgctgtgttct	13	9	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221055563	T	T	221055563	3	4	156	1	0	0	0	0	1	0	0	0	7283	838	29	4	840	4	HLX	1	221055563	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	835760	221055563	28195058	44	132507											
NVL	4931	broad.mit.edu	37	chr1	224514212	224514212	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacccaatatttcaaaCtcagtgattttaatcaacag	3	9	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224514212	G	G	224514212	1	3	156	0	1	0	0	0	0	0	0	0	10875	580	20	4		4	NVL	1	224514212	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	3458649	224514212	24736409	45	132508											
TMEM63A	9725	broad.mit.edu	37	chr1	226044794	226044794	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggccatgacctattggtaTggtcgctcagtggactccca	12	11	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226044794	C	C	226044794	1	2	156	0	1	0	0	0	0	0	0	0	16313	1479	51	5		5	TMEM63A	1	226044794	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	1530582	226044794	23205827	46	132509											
LYST	1130	broad.mit.edu	37	chr1	235933478	235933478	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctgcaaaacctgacaagtCagtagaaagtgatgaaccac	8	10	1	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235933478	A	A	235933478	2	1	156	1	0	0	0	0	0	0	0	1	9216	813	29	3		3	LYST	1	235933478	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	9888684	235933478	13317143	47	132510											
RYR2	6262	broad.mit.edu	37	chr1	237886328	237886328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactggtaaacactgtaaaGcccaataaataatgatgggt	8	6	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237886328	T	T	237886328	1	4	156	0	1	0	0	0	0	0	0	0	13880	986	34	3		3	RYR2	1	237886328	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	1952850	237886328	11364293	48	132511											
KMO	8564	broad.mit.edu	37	chr1	241731962	241731962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcggtaagttctttttcCctaggtaagtccctcaaata	7	9	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241731962	A	A	241731962	1	1	156	0	1	0	0	0	0	0	0	0	8495	638	22	2		2	KMO	1	241731962	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	3845634	241731962	7518659	49	132512											
OR2M7	391196	broad.mit.edu	37	chr1	248487582	248487582	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaaatttgtgtggcacAgccagccatagaaatggact	11	7	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487582	T	T	248487582	3	4	156	1	0	0	0	0	1	0	0	0	11108	188	7	5	652	5	OR2M7	1	248487582	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	6755620	248487582	763039	50	132513											
TPO	7173	broad.mit.edu	37	chr2	1499849	1499849	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggtcatctgtgacaacActggcctcaccagggtgccc	11	15	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1499849	G	G	1499849	3	3	156	1	0	0	0	0	1	0	0	0	16534	159	6	5	2137	5	TPO	2	1499849	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08		1499849	241699524	51	132514											
ID2	3398	broad.mit.edu	37	chr2	8822244	8822244	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaggcggcagcggcggcctGagcttcagggcagccagctc	17	14	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8822244	T	T	8822244	1	4	156	0	1	0	0	0	0	0	0	0	7560	1305	45	3		3	ID2	2	8822244	5'UTR	SNP	G	TCGA-50-5072-01A-21D-1855-08	7322395	8822244	234377129	52	132515											
DNAJC5G	285126	broad.mit.edu	37	chr2	27500725	27500725	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggaatgctcaagcagcaGaaatattcaaagagatcaac	9	8	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27500725	A	A	27500725	3	1	156	1	0	0	0	0	1	0	0	0	4692	943	33	4	223	4	DNAJC5G	2	27500725	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	18678481	27500725	215698648	53	132516											
GALNT14	79623	broad.mit.edu	37	chr2	31147108	31147108	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtcggatattgcccttctgGatggaggactccttggggat	14	8	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31147108	T	T	31147108	2	4	156	1	0	0	0	0	0	0	0	1	6274	1164	41	3		3	GALNT14	2	31147108	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	3646383	31147108	212052265	54	132517											
SULT6B1	391365	broad.mit.edu	37	chr2	37406711	37406711	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctgtatctttagggtttCgaaatatcaccaatatctag	7	8	3	0	rs11569744	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37406711	T	T	37406711	3	4	156	1	0	0	0	0	1	0	0	0	15502	884	31	4	508	4	SULT6B1	2	37406711	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	6259603	37406711	205792662	55	132518											
SPTBN1	6711	broad.mit.edu	37	chr2	54712059	54712059	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatatagtatgtcagcgctAtaaagaagttcttgagtgtc	10	5	2	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54712059	G	G	54712059	1	3	156	0	1	0	0	0	0	0	0	0	15237	464	16	5		5	SPTBN1	2	54712059	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	17305348	54712059	188487314	56	132519											
ADD2	119	broad.mit.edu	37	chr2	70900284	70900284	+	Intron	DEL	C	-	-													tctagctgaagttagctcctCcccctgaccttcttagattt							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70900284	-	-	70900284	6	5	156	0	1	1	0	1	0	0	0	0	305	870	30	0		0	ADD2	2	70900284	Intron	DEL	C	TCGA-50-5072-01A-21D-1855-08	16188225	70900284	172299089	57	132520											
NAGK	55577	broad.mit.edu	37	chr2	71297984	71297984	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcttggtgagtctggggcgGagcctgggaattcagccatc	16	9	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71297984	A	A	71297984	1	1	156	0	1	0	0	0	0	0	0	0	10236	1189	41	4		4	NAGK	2	71297984	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	397700	71297984	171901389	58	132521											
LRRTM1	347730	broad.mit.edu	37	chr2	80529683	80529683	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtggatctgcacggcgTtctcggcgtgctcgccgcct	13	15	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80529683	C	C	80529683	3	2	156	1	0	0	0	0	1	0	0	0	9126	1725	60	5	310	5	LRRTM1	2	80529683	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	9231699	80529683	162669690	59	132522											
MAT2A	4144	broad.mit.edu	37	chr2	85768989	85768989	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccactgatgaaactgaggAgtgtatgcctttaaccattg	10	8	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85768989	T	T	85768989	3	4	156	1	0	0	0	0	1	0	0	0	9422	304	11	5	461	5	MAT2A	2	85768989	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	5239306	85768989	157430384	60	132523											
CNTNAP5	129684	broad.mit.edu	37	chr2	124783392	124783392	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaactatctaagcgtactcGattgtgtctgctttgggcaa	9	9	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124783392	T	T	124783392	1	4	156	0	1	0	0	0	0	0	0	0	3682	1073	37	3		3	CNTNAP5	2	124783392	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	39014403	124783392	118415981	61	132524											
ERCC3	2071	broad.mit.edu	37	chr2	128050427	128050427	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatggccatcgggagcctgaGagataccaaatggacaaaac	11	9	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128050427	A	A	128050427	1	1	156	0	1	0	0	0	0	0	0	0	5256	957	33	4		4	ERCC3	2	128050427	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	3267035	128050427	115148946	62	132525											
PLEKHB2	55041	broad.mit.edu	37	chr2	131904041	131904051	+	Intron	DEL	GCGGTTTCAGG	-	-													tcttggtttcctcccagtgtGcggtttcagggatgtcggcc							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131904051	-	-	131904041	6	5	156	0	1	1	0	1	0	0	0	0	12160	1334	46	0		0	PLEKHB2	2	131904041	Intron	DEL	GCGGTTTCAGG	TCGA-50-5072-01A-21D-1855-08	3853614	131904041	111295332	63	132526											
TANK	10010	broad.mit.edu	37	chr2	162091731	162091731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttacggaaaagtaatttgCttttatattagggaattcaa	7	4	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162091731	T	T	162091731	1	4	156	0	1	0	0	0	0	0	0	0	15665	812	28	4		4	TANK	2	162091731	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	30187690	162091731	81107642	64	132527											
SLC25A12	8604	broad.mit.edu	37	chr2	172693839	172693840	+	Intron	DNP	GA	CT	CT													cattccaagtacatggtttgGaaaggaaggaaggacagata							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	172693840	CT	CT	172693839	1	2	156	0	1	0	0	0	0	0	0	0	14588	1189	41	4		4	SLC25A12	2	172693839	Intron	DNP	GA	TCGA-50-5072-01A-21D-1855-08	10602108	172693839	70505534	65	132528											
ZAK	51776	broad.mit.edu	37	chr2	174062863	174062863	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagactacgtttctccattcAggtacatagatcagaaaaca	6	9	3	3	rs13427117		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174062863	G	G	174062863	1	3	156	0	1	0	0	0	0	0	0	0	17639	203	7	5		5	ZAK	2	174062863	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	1369024	174062863	69136510	66	132529											
TTN	7273	broad.mit.edu	37	chr2	179433977	179433977	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttattttggatcccccatCcaacaaaggaggttcccatg	7	11	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179433977	G	G	179433977	3	3	156	1	0	0	0	0	1	0	0	0	16861	855	30	4	31245	4	TTN	2	179433977	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	5371114	179433977	63765396	67	132530											
TTN	7273	broad.mit.edu	37	chr2	179577492	179577492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taactatgcaagtatattctCcactttgtgatgtatctaca	5	8	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179577492	A	A	179577492	3	1	156	1	0	0	0	0	1	0	0	0	16861	855	30	3	77345	3	TTN	2	179577492	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	143515	179577492	63621881	68	132531											
TTN	7273	broad.mit.edu	37	chr2	179588160	179588160	+	Frame_Shift_Del	DEL	G	-	-													caaacctttcacaaagagacGggtagtgcaagatgcttggc							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179588160	-	-	179588160	7	5	156	1	0	1	0	1	0	0	0	0	16861	1116	39	0	83018	0	TTN	2	179588160	Frame_Shift_Del	DEL	G	TCGA-50-5072-01A-21D-1855-08	10668	179588160	63611213	69	132532											
MYO1B	4430	broad.mit.edu	37	chr2	192251909	192251909	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttgtttgacattatagcAtgcaatgtgcctgtcattga	9	6	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192251909	G	G	192251909	1	3	156	0	1	0	0	0	0	0	0	0	10163	232	8	5		5	MYO1B	2	192251909	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	12663749	192251909	50947464	70	132533											
TMEFF2	23671	broad.mit.edu	37	chr2	193056656	193056656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaattcttaaacattcccCatcaaatttacaggtgttgg	5	10	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193056656	A	A	193056656	3	1	156	1	0	0	0	0	1	0	0	0	16137	594	21	2	928	2	TMEFF2	2	193056656	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	804747	193056656	50142717	71	132534											
DNAH7	56171	broad.mit.edu	37	chr2	196681573	196681573	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcttctgagaaatctcAttagccaaggccttggagga	10	10	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196681573	G	G	196681573	2	3	156	1	0	0	0	0	0	0	0	1	4646	214	8	5		5	DNAH7	2	196681573	Silent	SNP	A	TCGA-50-5072-01A-21D-1855-08	3624917	196681573	46517800	72	132535											
NDUFS1	4719	broad.mit.edu	37	chr2	207003176	207003176	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataataataattaaaaatCaacaagagtagatacacata	3	4	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207003176	T	T	207003176	1	4	156	0	1	0	0	0	0	0	0	0	10386	841	29	4		4	NDUFS1	2	207003176	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	10321603	207003176	36196197	73	132536											
ACADL	33	broad.mit.edu	37	chr2	211075039	211075039	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgataaaaattaaattaTacaaatgatataagtatgta	4	1	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211075039	C	C	211075039	1	2	156	0	1	0	0	0	0	0	0	0	112	1421	49	5		5	ACADL	2	211075039	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	4071863	211075039	32124334	74	132537											
FN1	2335	broad.mit.edu	37	chr2	216274436	216274436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccacaagaggagaaaaggGagtcgtctctcctgtcacgg	14	10	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216274436	T	T	216274436	3	4	156	1	0	0	0	0	1	0	0	0	6020	1174	41	3	5412	3	FN1	2	216274436	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	5199397	216274436	26924937	75	132538											
SLC19A3	80704	broad.mit.edu	37	chr2	228567010	228567010	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtaaatccaggaactgcTtagtgaagttctgtaacaat	11	6	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228567010	G	G	228567010	3	3	156	1	0	0	0	0	1	0	0	0	14543	1609	56	5	1485	5	SLC19A3	2	228567010	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	12292574	228567010	14632363	76	132539											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239237900	239237900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggacaaagggaaggacaggGacagacggagagtgaaaaac	17	5	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	239237900	T	T	239237900	3	4	156	1	0	0	0	0	1	0	0	0	16564	1174	41	3	850	3	TRAF3IP1	2	239237900	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	10670890	239237900	3961473	77	132540											
OGG1	4968	broad.mit.edu	37	chr3	9792519	9792519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcagactggaagatagcActgttacttgtattagtttc	9	7	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9792519	G	G	9792519	1	3	156	0	1	0	0	0	0	0	0	0	10940	174	6	5		5	OGG1	3	9792519	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08		9792519	188229911	78	132541											
CMTM7	112616	broad.mit.edu	37	chr3	32483336	32483336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatttatgtggcaggtcaCcctgctgattgccttcatct	8	11	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32483336	A	A	32483336	3	1	156	1	0	0	0	0	1	0	0	0	3620	507	18	3	170	3	CMTM7	3	32483336	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	22690817	32483336	165539094	79	132542											
TRANK1	9881	broad.mit.edu	37	chr3	36896601	36896601	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagagctagtctgcagcttCaaaggcagcccaaagtctgt	10	11	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36896601	A	A	36896601	1	1	156	0	1	0	0	0	0	0	0	0	16578	841	29	3		3	TRANK1	3	36896601	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	4413265	36896601	161125829	80	132543											
TTC21A	199223	broad.mit.edu	37	chr3	39166949	39166949	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggcatccctcttggctctGagtactttgaaaagctggac	10	10	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39166949	C	C	39166949	3	2	156	1	0	0	0	0	1	0	0	0	16813	1291	45	4	1384	4	TTC21A	3	39166949	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2270348	39166949	158855481	81	132544											
LTF	4057	broad.mit.edu	37	chr3	46490396	46490396	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtggtggaggccgaggaGcaggtcacgctgccttcgct	16	11	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46490396	T	T	46490396	4	4	156	1	0	0	0	0	0	1	0	0	9166	963	34	3	998	3	LTF	3	46490396	Nonsense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	7323447	46490396	151532034	82	132545											
ATRIP	84126	broad.mit.edu	37	chr3	48491469	48491469	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaggtccacagattattaGatggcatgtcaaaaaatcct	7	7	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48491469	T	T	48491469	3	4	156	1	0	0	0	0	1	0	0	0	1209	942	33	3	280	3	ATRIP	3	48491469	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2001073	48491469	149530961	83	132546											
LNP1	348801	broad.mit.edu	37	chr3	100174871	100174871	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgggggcggggttggggGtaaaaacagctataaaaagc	18	4	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100174871	T	T	100174871	1	4	156	0	1	0	0	0	0	0	0	0	8937	1276	44	3		3	LNP1	3	100174871	3'UTR	SNP	G	TCGA-50-5072-01A-21D-1855-08	51683402	100174871	97847559	84	132547											
WDR52	55779	broad.mit.edu	37	chr3	113146015	113146015	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacagtgacaattactgacaGaaaactaataatacctacct	4	9	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113146015	A	A	113146015	1	1	156	0	1	0	0	0	0	0	0	0	17431	957	33	4		4	WDR52	3	113146015	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	12971144	113146015	84876415	85	132548											
POLQ	10721	broad.mit.edu	37	chr3	121265489	121265489	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaacggtgaccattcatTacctagttgcataattcatt	6	8	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121265489	C	C	121265489	1	2	156	0	1	0	0	0	0	0	0	0	12303	1769	61	5		5	POLQ	3	121265489	5'Flank	SNP	T	TCGA-50-5072-01A-21D-1855-08	8119474	121265489	76756941	86	132549											
HCLS1	3059	broad.mit.edu	37	chr3	121351229	121351229	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggctcgagcacctcctcaTagtccccctctggttcatcc	7	18	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121351229	G	G	121351229	3	3	156	1	0	0	0	0	1	0	0	0	7061	1406	49	5	282	5	HCLS1	3	121351229	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	85740	121351229	76671201	87	132550											
PARP9	83666	broad.mit.edu	37	chr3	122278481	122278481	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccatcctccaggtccccGggggagtctttaaatgttta	10	11	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122278481	T	T	122278481	1	4	156	0	1	0	0	0	0	0	0	0	11560	1131	39	1		1	PARP9	3	122278481	5'UTR	SNP	G	TCGA-50-5072-01A-21D-1855-08	927252	122278481	75743949	88	132551											
SNX4	8723	broad.mit.edu	37	chr3	125208251	125208251	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttattaaaacaaaaccttaCttgtctgggtttttcactct	5	8	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125208251	G	G	125208251	5	3	156	1	0	0	0	0	0	0	1	0	15018	579	20	4	734	4	SNX4	3	125208251	Splice_Site	SNP	C	TCGA-50-5072-01A-21D-1855-08	2929770	125208251	72814179	89	132552											
EPHB1	2047	broad.mit.edu	37	chr3	134851590	134851590	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccccgcaatgttatctccatCgtcaatgagacgtccatcat	6	14	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134851590	G	G	134851590	3	3	156	1	0	0	0	0	1	0	0	0	5216	874	31	4	1014	4	EPHB1	3	134851590	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	9643339	134851590	63170840	90	132553											
C3orf72	401089	broad.mit.edu	37	chr3	138669576	138669576	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctctgtcaactccaaaTcccctctagttctccctccc	2	21	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138669576	C	C	138669576	1	2	156	0	1	0	0	0	0	0	0	0	2266	1450	50	5		5	C3orf72	3	138669576	3'UTR	SNP	T	TCGA-50-5072-01A-21D-1855-08	3817986	138669576	59352854	91	132554											
LEKR1	389170	broad.mit.edu	37	chr3	156763120	156763120	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctttcttttcccctctcTcttttcagaatacttttctt	2	13	5	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156763120	A	A	156763120	1	1	156	0	1	0	0	0	0	0	0	0	8789	1566	54	5		5	LEKR1	3	156763120	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	18093544	156763120	41259310	92	132555											
SMC4	10051	broad.mit.edu	37	chr3	160142555	160142555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagtgagctgagaccgcGccattgcactccagcctggg	13	13	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160142555	T	T	160142555	1	4	156	0	1	0	0	0	0	0	0	0	14899	1102	38	3		3	SMC4	3	160142555	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	3379435	160142555	37879875	93	132556											
SI	6476	broad.mit.edu	37	chr3	164741524	164741524	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaataagagttatcttgtCtgggaaagtaacactcaggt	10	6	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164741524	G	G	164741524	3	3	156	1	0	0	0	0	1	0	0	0	14410	913	32	4	2642	4	SI	3	164741524	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	4598969	164741524	33280906	94	132557											
EIF4A2	1974	broad.mit.edu	37	chr3	186501395	186501395	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcgctgagtggtttttcGgatcatgtctggtggctccg	16	9	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186501395	T	T	186501395	1	4	156	0	1	0	0	0	0	0	0	0	5067	1131	39	1		1	EIF4A2	3	186501395	5'UTR	SNP	G	TCGA-50-5072-01A-21D-1855-08	21759871	186501395	11521035	95	132558											
RTP2	344892	broad.mit.edu	37	chr3	187416668	187416668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccagccgcgccgtgccgCactcatagcacagctgcttg	11	17	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187416668	A	A	187416668	3	1	156	1	0	0	0	0	1	0	0	0	13845	710	25	3	385	3	RTP2	3	187416668	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	915273	187416668	10605762	96	132559											
CCDC50	152137	broad.mit.edu	37	chr3	191087848	191087848	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacaattcctgcatcatgatCtattctatccttagactcaa	3	11	4	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191087848	G	G	191087848	1	3	156	0	1	0	0	0	0	0	0	0	2848	928	32	4		4	CCDC50	3	191087848	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	3671180	191087848	6934582	97	132560											
OSTalpha	200931	broad.mit.edu	37	chr3	195955565	195955565	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccccatccacttaacctgGttggtgtttatgacagcagc	9	12	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195955565	A	A	195955565	1	1	156	0	1	0	0	0	0	0	0	0	11394	1276	44	4		4	OSTalpha	3	195955565	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	4867717	195955565	2066865	98	132561											
EVC2	132884	broad.mit.edu	37	chr4	5617334	5617334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaagtccatgcagctccCccgagggctttgcaggtcaa	11	14	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5617334	A	A	5617334	1	1	156	0	1	0	0	0	0	0	0	0	5328	638	22	2		2	EVC2	4	5617334	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08		5617334	185536942	99	132562											
ZNF518B	85460	broad.mit.edu	37	chr4	10446391	10446391	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaactgctgtgagctactgTgtaaatttcttccactttca	7	9	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10446391	A	A	10446391	3	1	156	1	0	0	0	0	1	0	0	0	18090	1696	59	5	1666	5	ZNF518B	4	10446391	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	4829057	10446391	180707885	100	132563											
FRYL	285527	broad.mit.edu	37	chr4	48583493	48583493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctaaggacactgacggCtagtctcctagtggcaggtc	11	11	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48583493	A	A	48583493	3	1	156	1	0	0	0	0	1	0	0	0	6124	797	28	3	7101	3	FRYL	4	48583493	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	38137102	48583493	142570783	101	132564											
SMR3A	26952	broad.mit.edu	37	chr4	71232648	71232648	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaccaagaccctatccaccTggacctccatttttccctgt	4	17	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71232648	A	A	71232648	2	1	156	1	0	0	0	0	0	0	0	1	14925	1567	55	5		5	SMR3A	4	71232648	Silent	SNP	T	TCGA-50-5072-01A-21D-1855-08	22649155	71232648	119921628	102	132565											
HERC3	8916	broad.mit.edu	37	chr4	89575330	89575330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgctggggatatgatggGtgattagaattgcttgatta	15	2	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89575330	T	T	89575330	1	4	156	0	1	0	0	0	0	0	0	0	7126	1276	44	3		3	HERC3	4	89575330	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	18342682	89575330	101578946	103	132566											
PAPSS1	9061	broad.mit.edu	37	chr4	108603305	108603305	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaacctgcaaaaggtaacaGataatagagtagggtggaaa	12	4	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108603305	A	A	108603305	1	1	156	0	1	0	0	0	0	0	0	0	11528	957	33	4		4	PAPSS1	4	108603305	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	19027975	108603305	82550971	104	132567											
INTU	27152	broad.mit.edu	37	chr4	128637412	128637412	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaaaattaaattaatTggatggttagagtttttgtt	8	1	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128637412	A	A	128637412	1	1	156	0	1	0	0	0	0	0	0	0	7856	1827	63	5		5	INTU	4	128637412	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	20034107	128637412	62516864	105	132568											
MFSD8	256471	broad.mit.edu	37	chr4	128858593	128858593	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatctctatcttgattcctCtttcaacaactcctacttat	1	12	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128858593	T	T	128858593	1	4	156	0	1	0	0	0	0	0	0	0	9631	928	32	4		4	MFSD8	4	128858593	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	221181	128858593	62295683	106	132569											
MAML3	55534	broad.mit.edu	37	chr4	140640665	140640665	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcttggctctggctgcttgGagcaaagctgccactgggta	15	10	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140640665	A	A	140640665	3	1	156	1	0	0	0	0	1	0	0	0	9299	1174	41	4	191	4	MAML3	4	140640665	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	11782072	140640665	50513611	107	132570											
OTUD4	54726	broad.mit.edu	37	chr4	146077104	146077104	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atacctcattgcctgacaaaGgtttaaatccattcacatca	4	11	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146077104	C	C	146077104	3	2	156	1	0	0	0	0	1	0	0	0	11408	1000	35	4	2726	4	OTUD4	4	146077104	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	5436439	146077104	45077172	108	132571											
TRIM2	23321	broad.mit.edu	37	chr4	154217122	154217122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagctgtgaaaagacccGcaagcatgtacagcactgga	11	9	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154217122	T	T	154217122	3	4	156	1	0	0	0	0	1	0	0	0	16618	1087	38	3	1466	3	TRIM2	4	154217122	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	8140018	154217122	36937154	109	132572											
NAF1	92345	broad.mit.edu	37	chr4	164069622	164069622	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacaaaacattaaacttccTccagcttcaacaacttaaaa	1	11	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164069622	C	C	164069622	1	2	156	0	1	0	0	0	0	0	0	0	10234	1566	54	5		5	NAF1	4	164069622	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	9852500	164069622	27084654	110	132573											
ODZ3	55714	broad.mit.edu	37	chr4	183245345	183245345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgattcctcgcggctgCtttacggcaacagagtgaag	11	10	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183245345	A	A	183245345	3	1	156	1	0	0	0	0	1	0	0	0	10931	797	28	3	174	3	ODZ3	4	183245345	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	19175723	183245345	7908931	111	132574											
F11	2160	broad.mit.edu	37	chr4	187192834	187192834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacggtcttcacaccaagcGccaagtactgccaggtagtc	9	14	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187192834	T	T	187192834	3	4	156	1	0	0	0	0	1	0	0	0	5380	1087	38	3	133	3	F11	4	187192834	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	3947489	187192834	3961442	112	132575											
FBXL7	23194	broad.mit.edu	37	chr5	15935166	15935166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagacctgggaaagtctGgagggctaagggaagccatt	15	7	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15935166	T	T	15935166	1	4	156	0	1	0	0	0	0	0	0	0	5781	1363	47	2		2	FBXL7	5	15935166	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08		15935166	164980094	113	132576											
CDH12	1010	broad.mit.edu	37	chr5	21783711	21783712	+	Intron	DNP	CC	AA	AA													tttctccctgtagctattacCcaccttgcaataaagaagac							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21783712	AA	AA	21783711	1	1	156	0	1	0	0	0	0	0	0	0	3128	638	22	2		2	CDH12	5	21783711	Intron	DNP	CC	TCGA-50-5072-01A-21D-1855-08	5848545	21783711	159131549	114	132577											
FYB	2533	broad.mit.edu	37	chr5	39127936	39127936	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggattggaggaaaatcttCtgttaattttataatttggc	9	3	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39127936	T	T	39127936	1	4	156	0	1	0	0	0	0	0	0	0	6184	928	32	4		4	FYB	5	39127936	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	17344225	39127936	141787324	115	132578											
OXCT1	5019	broad.mit.edu	37	chr5	41853613	41853613	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagagaccatgcgttttaTctgcttggaccgaagcaaaa	10	8	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41853613	A	A	41853613	3	1	156	1	0	0	0	0	1	0	0	0	11423	1435	50	5	1296	5	OXCT1	5	41853613	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	2725677	41853613	139061647	116	132579											
CHD1	1105	broad.mit.edu	37	chr5	98195826	98195826	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctggtggaaaatatttagTttttttcatggaactccttc	8	6	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98195826	A	A	98195826	1	1	156	0	1	0	0	0	0	0	0	0	3354	1740	60	5		5	CHD1	5	98195826	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	56342213	98195826	82719434	117	132580											
MCC	4163	broad.mit.edu	37	chr5	112439857	112439857	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttccctttcagaacctcAaagggcctcacagagggtga	9	12	3	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112439857	T	T	112439857	1	4	156	0	1	0	0	0	0	0	0	0	9466	145	5	5		5	MCC	5	112439857	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	14244031	112439857	68475403	118	132581											
KCNN2	3781	broad.mit.edu	37	chr5	113831719	113831719	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catccacgccctccctgggcTcataagccagaccatcaggc	8	18	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113831719	C	C	113831719	3	2	156	1	0	0	0	0	1	0	0	0	8149	1551	54	5	1610	5	KCNN2	5	113831719	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	1391862	113831719	67083541	119	132582											
TRIM36	55521	broad.mit.edu	37	chr5	114482982	114482982	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccacaatagtttccaaagtGaagtttcgaaacagaccatt	6	9	0	2	rs139015715	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114482982	A	A	114482982	2	1	156	1	0	0	0	0	0	0	0	1	16634	1281	45	4		4	TRIM36	5	114482982	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	651263	114482982	66432278	120	132583											
ETF1	2107	broad.mit.edu	37	chr5	137844355	137844355	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtttgctgatttgctactCacctccaattccaccaaatc	5	13	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137844355	T	T	137844355	1	4	156	0	1	0	0	0	0	0	0	0	5310	841	29	4		4	ETF1	5	137844355	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	23361373	137844355	43070905	121	132584											
PCDHB6	56130	broad.mit.edu	37	chr5	140531678	140531678	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacggagctcggtctgttcGgcgtgtgggcgcacaatggc	16	12	1	0	rs137911178		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140531678	A	A	140531678	3	1	156	1	0	0	0	0	1	0	0	0	11640	1116	39	4	1842	4	PCDHB6	5	140531678	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2687323	140531678	40383582	122	132585											
PCDHB11	56125	broad.mit.edu	37	chr5	140579865	140579865	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaaaagctacacaataaGccccaactctcattttcaca	3	12	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140579865	T	T	140579865	3	4	156	1	0	0	0	0	1	0	0	0	11630	971	34	3	520	3	PCDHB11	5	140579865	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	48187	140579865	40335395	123	132586											
PCDHB12	56124	broad.mit.edu	37	chr5	140589508	140589508	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatggatgtaaacgacaaCgctcctgaaatcactgtgtc	10	9	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140589508	T	T	140589508	2	4	156	1	0	0	0	0	0	0	0	1	11631	535	19	4		4	PCDHB12	5	140589508	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	9643	140589508	40325752	124	132587											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730263	140730263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgagtcagccttacccGgggtaaaattctctctggat	10	9	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140730263	T	T	140730263	3	4	156	1	0	0	0	0	1	0	0	0	11656	1116	39	1	438	1	PCDHGB1	5	140730263	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	140755	140730263	40184997	125	132588											
JAKMIP2	9832	broad.mit.edu	37	chr5	146997537	146997537	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacagtcatactctctgctCttcctcagcatttgccgccg	7	15	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146997537	A	A	146997537	3	1	156	1	0	0	0	0	1	0	0	0	8011	912	32	3	161	3	JAKMIP2	5	146997537	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	6267274	146997537	33917723	126	132589											
SPINK5	11005	broad.mit.edu	37	chr5	147450054	147450054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctttccaatgtttgagttAacagctagtctctgaactgg	8	8	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147450054	T	T	147450054	1	4	156	0	1	0	0	0	0	0	0	0	15180	377	13	5		5	SPINK5	5	147450054	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	452517	147450054	33465206	127	132590											
ADAM19	8728	broad.mit.edu	37	chr5	156936185	156936185	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaatgcctgattctctgGaccagggagtcagaatggcc	13	9	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156936185	T	T	156936185	1	4	156	0	1	0	0	0	0	0	0	0	240	1189	41	3		3	ADAM19	5	156936185	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	9486131	156936185	23979075	128	132591											
CCDC99	54908	broad.mit.edu	37	chr5	169023598	169023599	+	Frame_Shift_Del	DEL	TC	-	-													cgttgctacagatgaaagggTctcaaactgaatttgagcag							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169023599	-	-	169023598	7	5	156	1	0	1	0	1	0	0	0	0	2904	1667	58	0	951	0	CCDC99	5	169023598	Frame_Shift_Del	DEL	TC	TCGA-50-5072-01A-21D-1855-08	12087413	169023598	11891662	129	132592											
NPM1	4869	broad.mit.edu	37	chr5	170833447	170833447	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtaaattaagcccaaagaTggggagaaaggaaaaggaga	13	3	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170833447	C	C	170833447	1	2	156	0	1	0	0	0	0	0	0	0	10682	1479	51	5		5	NPM1	5	170833447	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	1809849	170833447	10081813	130	132593											
SQSTM1	8878	broad.mit.edu	37	chr5	179249978	179249978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggacggggacttggttGccttttccagtgacgaggaa	15	7	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179249978	T	T	179249978	3	4	156	1	0	0	0	0	1	0	0	0	15248	1319	46	3	232	3	SQSTM1	5	179249978	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	8416531	179249978	1665282	131	132594											
FLT4	2324	broad.mit.edu	37	chr5	180039569	180039569	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctccgagaatgcaggtctCgccttggggtctccggacca	13	13	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180039569	A	A	180039569	2	1	156	1	0	0	0	0	0	0	0	1	6002	871	31	3		3	FLT4	5	180039569	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	789591	180039569	875691	132	132595											
F13A1	2162	broad.mit.edu	37	chr6	6167695	6167695	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgctaagactgaccttgAtgatgatctcagggatggtt	12	7	1	6			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6167695	T	T	6167695	3	4	156	1	0	0	0	0	1	0	0	0	5383	333	12	5	306	5	F13A1	6	6167695	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08		6167695	164947372	133	132596											
CAGE1	285782	broad.mit.edu	37	chr6	7334277	7334277	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttttctggctttttctcTgggctttctaattaaatcct	7	8	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7334277	A	A	7334277	4	1	156	1	0	0	0	0	0	1	0	0	2598	1588	55	5	221	5	CAGE1	6	7334277	Nonsense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	1166582	7334277	163780790	134	132597											
HDGFL1	154150	broad.mit.edu	37	chr6	22569816	22569816	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccagctatgtcggcctaCggcatgcccatgtacaagag	11	12	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22569816	T	T	22569816	2	4	156	1	0	0	0	0	0	0	0	1	7086	547	19	4		4	HDGFL1	6	22569816	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	15235539	22569816	148545251	135	132598											
NRSN1	140767	broad.mit.edu	37	chr6	24146171	24146171	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagcctctactggcaacCtgaaacctttcccaccccag	6	18	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24146171	T	T	24146171	2	4	156	1	0	0	0	0	0	0	0	1	10757	668	24	4		4	NRSN1	6	24146171	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	1576355	24146171	146968896	136	132599											
KIAA0319	9856	broad.mit.edu	37	chr6	24596749	24596749	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagtctacgacagggaaGgtgtgagacacccgcatgat	14	9	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24596749	A	A	24596749	2	1	156	1	0	0	0	0	0	0	0	1	8238	987	35	4		4	KIAA0319	6	24596749	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	450578	24596749	146518318	137	132600											
GABBR1	2550	broad.mit.edu	37	chr6	29555637	29555637	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacctgctgtgacctcacaAacacccaggctgagttttga	8	13	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29555637	G	G	29555637	1	3	156	0	1	0	0	0	0	0	0	0	6215	29	1	5		5	GABBR1	6	29555637	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	4958888	29555637	141559430	138	132601											
ATF6B	1388	broad.mit.edu	37	chr6	32087508	32087508	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacttttttctcctaggtatCgactccctcctcatcccaca	3	17	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32087508	T	T	32087508	1	4	156	0	1	0	0	0	0	0	0	0	1089	899	31	4		4	ATF6B	6	32087508	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	2531871	32087508	139027559	139	132602											
PFDN6	10471	broad.mit.edu	37	chr6	33258274	33258274	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcaccctgtgatgcaagtGaaccattggagtagaggtgt	13	8	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33258274	A	A	33258274	1	1	156	0	1	0	0	0	0	0	0	0	11854	1305	45	4		4	PFDN6	6	33258274	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	1170766	33258274	137856793	140	132603											
YIPF3	25844	broad.mit.edu	37	chr6	43484439	43484439	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgccggccctccggctgctGgcagctggtgccttggggcc	16	16	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43484439	A	A	43484439	1	1	156	0	1	0	0	0	0	0	0	0	17606	1363	47	4		4	YIPF3	6	43484439	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	10226165	43484439	127630628	141	132604											
GPR111	222611	broad.mit.edu	37	chr6	47647861	47647861	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atataaaaataagtgtatatActggaaagtctgagaccata	7	4	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47647861	G	G	47647861	3	3	156	1	0	0	0	0	1	0	0	0	6693	391	14	5	336	5	GPR111	6	47647861	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	4163422	47647861	123467206	142	132605											
EFHC1	114327	broad.mit.edu	37	chr6	52319147	52319147	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaggttcttaaaggagttaCttaatcagtatgcaaaattc	7	5	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52319147	G	G	52319147	1	3	156	0	1	0	0	0	0	0	0	0	4986	580	20	4		4	EFHC1	6	52319147	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	4671286	52319147	118795920	143	132606											
PRIM2	5558	broad.mit.edu	37	chr6	57512650	57512650	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggcctctttaaattcctCtctggaaatggatatggaag	9	8	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57512650	A	A	57512650	3	1	156	1	0	0	0	0	1	0	0	0	12597	913	32	3	1528	3	PRIM2	6	57512650	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	5193503	57512650	113602417	144	132607											
EEF1A1	1915	broad.mit.edu	37	chr6	74228042	74228042	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtctcaaatgactttagcCtctgcaataagttaatgtta	6	7	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74228042	T	T	74228042	1	4	156	0	1	0	0	0	0	0	0	0	4963	696	24	4		4	EEF1A1	6	74228042	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	16715392	74228042	96887025	145	132608											
COL12A1	1303	broad.mit.edu	37	chr6	75875304	75875304	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaattctgtatttggtctCtggctgcagattttctatca	8	7	4	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75875304	T	T	75875304	3	4	156	1	0	0	0	0	1	0	0	0	3701	922	32	4	6501	4	COL12A1	6	75875304	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	1647262	75875304	95239763	146	132609											
MDN1	23195	broad.mit.edu	37	chr6	90472078	90472078	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttgttaacagcagacttGtgtacatgctgcattagtct	8	9	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90472078	A	A	90472078	2	1	156	1	0	0	0	0	0	0	0	1	9508	1368	48	4		4	MDN1	6	90472078	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	14596774	90472078	80642989	147	132610											
ASCC3	10973	broad.mit.edu	37	chr6	100978477	100978477	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgattattgcatggatgTtcagagcagcaatacagtgt	11	5	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100978477	A	A	100978477	1	1	156	0	1	0	0	0	0	0	0	0	1037	1740	60	5		5	ASCC3	6	100978477	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	10506399	100978477	70136590	148	132611											
PREP	5550	broad.mit.edu	37	chr6	105750483	105750483	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtacctcttgcccttgtaGaatttcctgaggttttcttt	7	9	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105750483	A	A	105750483	1	1	156	0	1	0	0	0	0	0	0	0	12580	957	33	4		4	PREP	6	105750483	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	4772006	105750483	65364584	149	132612											
REV3L	5980	broad.mit.edu	37	chr6	111694531	111694531	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacagcatcacttaggaacTtctgaggcaaattctgatca	8	9	4	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111694531	A	A	111694531	3	1	156	1	0	0	0	0	1	0	0	0	13348	1609	56	5	4445	5	REV3L	6	111694531	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	5944048	111694531	59420536	150	132613											
LRP11	84918	broad.mit.edu	37	chr6	150184392	150184392	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccaaactactgggcttcctCttccctaagacagagaaacc	7	14	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150184392	T	T	150184392	1	4	156	0	1	0	0	0	0	0	0	0	9040	928	32	4		4	LRP11	6	150184392	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	38489861	150184392	20930675	151	132614											
SYNE1	23345	broad.mit.edu	37	chr6	152605151	152605151	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccgaggctttcatcctgaTggtggacattcgctcggcta	11	13	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152605151	A	A	152605151	3	1	156	1	0	0	0	0	1	0	0	0	15564	1464	51	5	8501	5	SYNE1	6	152605151	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	2420759	152605151	18509916	152	132615											
SMOC2	64094	broad.mit.edu	37	chr6	169053663	169053663	+	Frame_Shift_Del	DEL	T	-	-													acccgaccccagccatacccTagaggagcgggtggtgcact							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169053663	-	-	169053663	7	5	156	1	0	1	0	1	0	0	0	0	14916	1522	53	0	1115	0	SMOC2	6	169053663	Frame_Shift_Del	DEL	T	TCGA-50-5072-01A-21D-1855-08	16448512	169053663	2061404	153	132616											
CARD11	84433	broad.mit.edu	37	chr7	2952838	2952838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggagggaagagaagagGggaggagggaagagaagagg	25	0	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2952838	T	T	2952838	1	4	156	0	1	0	0	0	0	0	0	0	2671	1247	43	2		2	CARD11	7	2952838	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08		2952838	156185825	154	132617											
SDK1	221935	broad.mit.edu	37	chr7	3991345	3991345	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacaatcgtcgtcatgaatGcctttcattcccacaggcct	6	14	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3991345	A	A	3991345	1	1	156	0	1	0	0	0	0	0	0	0	14081	1334	46	4		4	SDK1	7	3991345	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	1038507	3991345	155147318	155	132618											
TNRC18	84629	broad.mit.edu	37	chr7	5353295	5353295	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctctgcaaatggctcGggtgctgggcagctggtgaa	17	9	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5353295	T	T	5353295	2	4	156	1	0	0	0	0	0	0	0	1	16462	1103	39	1		1	TNRC18	7	5353295	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	1361950	5353295	153785368	156	132619											
ISPD	729920	broad.mit.edu	37	chr7	16298130	16298130	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaccagaaaaataaaaGgatatgagaagacgttttta	8	3	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16298130	A	A	16298130	1	1	156	0	1	0	0	0	0	0	0	0	7934	1015	35	4		4	ISPD	7	16298130	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	10944835	16298130	142840533	157	132620											
CREB5	9586	broad.mit.edu	37	chr7	28848736	28848736	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttttaacatcagcttGggtttcttcccttacctaac	5	11	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28848736	T	T	28848736	1	4	156	0	1	0	0	0	0	0	0	0	3892	1363	47	2		2	CREB5	7	28848736	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	12550606	28848736	130289927	158	132621											
DPY19L1	23333	broad.mit.edu	37	chr7	34982180	34982180	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaaggaaagtccaaatgCatgcaactttaagataagta	8	5	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34982180	A	A	34982180	1	1	156	0	1	0	0	0	0	0	0	0	4780	725	25	3		3	DPY19L1	7	34982180	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	6133444	34982180	124156483	159	132622											
FIGNL1	63979	broad.mit.edu	37	chr7	50513841	50513841	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataataagttcaatcatcTttggctccaagttcttcaga	5	9	6	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50513841	C	C	50513841	3	2	156	1	0	0	0	0	1	0	0	0	5949	1609	56	5	883	5	FIGNL1	7	50513841	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	15531661	50513841	108624822	160	132623											
VOPP1	81552	broad.mit.edu	37	chr7	55540620	55540620	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggagggggcgggcaggcCacactcccctggggtgagtt	19	11	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55540620	A	A	55540620	2	1	156	1	0	0	0	0	0	0	0	1	17311	581	21	2		2	VOPP1	7	55540620	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	5026779	55540620	103598043	161	132624											
SEPT14	346288	broad.mit.edu	37	chr7	55863504	55863504	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatatacaataagcaagcCaatttttaaaatgagaactt	4	5	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55863504	A	A	55863504	1	1	156	0	1	0	0	0	0	0	0	0	14176	609	21	2		2	SEPT14	7	55863504	3'UTR	SNP	C	TCGA-50-5072-01A-21D-1855-08	322884	55863504	103275159	162	132625											
ZNF713	349075	broad.mit.edu	37	chr7	55980359	55980359	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatgctgttttttctcaGgaggggaacatggaggagga	15	5	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55980359	T	T	55980359	1	4	156	1	0	0	0	0	0	0	0	0	18245	1015	35	2		2	ZNF713	7	55980359	Translation_Start_Site	SNP	G	TCGA-50-5072-01A-21D-1855-08	116855	55980359	103158304	163	132626											
GBAS	2631	broad.mit.edu	37	chr7	56065217	56065217	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttcaccctgacactaatAggtgggttttgtaatagtat	8	7	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56065217	T	T	56065217	1	4	156	0	1	0	0	0	0	0	0	0	6331	435	15	5		5	GBAS	7	56065217	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	84858	56065217	103073446	164	132627											
CCT6A	908	broad.mit.edu	37	chr7	56130677	56130677	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attagggctcctaatcatctGagccatcttatttttgtccc	6	11	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56130677	C	C	56130677	1	2	156	0	1	0	0	0	0	0	0	0	2987	1305	45	4		4	CCT6A	7	56130677	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	65460	56130677	103007986	165	132628											
MAGI2	9863	broad.mit.edu	37	chr7	77762279	77762279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgttgggggtggctgGgcttggctgggccaggggac	24	7	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77762279	T	T	77762279	3	4	156	1	0	0	0	0	1	0	0	0	9283	1232	43	2	1257	2	MAGI2	7	77762279	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	21631602	77762279	81376384	166	132629											
AASS	10157	broad.mit.edu	37	chr7	121773752	121773752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggctgacccccagcctgCccagtccagtcctatgtact	9	16	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121773752	T	T	121773752	3	4	156	1	0	0	0	0	1	0	0	0	24	739	26	4	2843	4	AASS	7	121773752	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	44011473	121773752	37364911	167	132630											
MGAM	8972	broad.mit.edu	37	chr7	141727025	141727025	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttgttcaagaatatctaGaggtaaacttaggatgtcaa	9	4	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141727025	T	T	141727025	4	4	156	1	0	0	0	0	0	1	0	0	9634	943	33	3	1123	3	MGAM	7	141727025	Nonsense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	19953273	141727025	17411638	168	132631											
PRSS1	5644	broad.mit.edu	37	chr7	142458502	142458502	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccctgaattctggctaccActtctgtggtggctccctca	9	14	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142458502	T	T	142458502	3	4	156	1	0	0	0	0	1	0	0	0	12720	159	6	5	143	5	PRSS1	7	142458502	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	731477	142458502	16680161	169	132632											
TAS2R39	259285	broad.mit.edu	37	chr7	142880730	142880730	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcagtttccacaagtggCaggatcctggttttcctgag	12	9	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142880730	A	A	142880730	2	1	156	1	0	0	0	0	0	0	0	1	15695	697	25	3		3	TAS2R39	7	142880730	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	422228	142880730	16257933	170	132633											
CLCN1	1180	broad.mit.edu	37	chr7	143018931	143018931	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgggcagtggcatccccgTggggaaagaggtaggcctgg	18	10	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143018931	C	C	143018931	3	2	156	1	0	0	0	0	1	0	0	0	3493	1696	59	5	704	5	CLCN1	7	143018931	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	138201	143018931	16119732	171	132634											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471293	146471293	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agattcaatgattttttaacCaacacataccaatcgttatt	3	8	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146471293	G	G	146471293	1	3	156	0	1	0	0	0	0	0	0	0	3679	609	21	4		4	CNTNAP2	7	146471293	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	3452362	146471293	12667370	172	132635											
CHPF2	54480	broad.mit.edu	37	chr7	150934520	150934520	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagggctgagctggcccGttgggctccctgctcctttc	14	14	0	1	rs139006025	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150934520	A	A	150934520	3	1	156	1	0	0	0	0	1	0	0	0	3400	1145	40	4	1086	4	CHPF2	7	150934520	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	4463227	150934520	8204143	173	132636											
BMP1	649	broad.mit.edu	37	chr8	22056742	22056742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcatcgaggctcagccCtcagggcccggggcatctga	17	13	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22056742	A	A	22056742	1	1	156	0	1	0	0	0	0	0	0	0	1462	696	24	2		2	BMP1	8	22056742	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08		22056742	124307280	174	132637											
GPR124	25960	broad.mit.edu	37	chr8	37691661	37691661	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtggtaatgggggtcagCagagggggtggccctggcat	19	7	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37691661	T	T	37691661	1	4	156	0	1	0	0	0	0	0	0	0	6703	725	25	4		4	GPR124	8	37691661	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	15634919	37691661	108672361	175	132638											
ADAM2	2515	broad.mit.edu	37	chr8	39694617	39694617	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagaaacaaaatctttacaTcattttaaatttgtaaatac	2	5	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39694617	A	A	39694617	1	1	156	0	1	0	0	0	0	0	0	0	241	1450	50	5		5	ADAM2	8	39694617	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	2002956	39694617	106669405	176	132639											
AGPAT6	137964	broad.mit.edu	37	chr8	41471854	41471854	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatttataaacatattttgAcgatgtgtataaggttgtct	7	3	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41471854	T	T	41471854	1	4	156	0	1	0	0	0	0	0	0	0	391	290	10	5		5	AGPAT6	8	41471854	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	1777237	41471854	104892168	177	132640											
ST18	9705	broad.mit.edu	37	chr8	53044594	53044594	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacaatgtggtagctcttGtttgttcagtttccaggaga	13	6	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53044594	A	A	53044594	4	1	156	1	0	0	0	0	0	1	0	0	15330	1386	48	4	573	4	ST18	8	53044594	Nonsense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	11572740	53044594	93319428	178	132641											
TRIM55	84675	broad.mit.edu	37	chr8	67086790	67086790	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctgagccagctcgccatAtcttctccttttcctggttg	7	13	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67086790	T	T	67086790	3	4	156	1	0	0	0	0	1	0	0	0	16654	449	16	5	1739	5	TRIM55	8	67086790	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	14042196	67086790	79277232	179	132642											
UBR5	51366	broad.mit.edu	37	chr8	103274015	103274015	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttaacaccgacagtatcCatctctcctatgtgtacaca	4	13	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103274015	T	T	103274015	1	4	156	0	1	0	0	0	0	0	0	0	17031	609	21	4		4	UBR5	8	103274015	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	36187225	103274015	43090007	180	132643											
COL14A1	7373	broad.mit.edu	37	chr8	121344988	121344988	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accacctgtgagtatgcagcGgtagctgctcagaatgtagg	13	9	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121344988	A	A	121344988	1	1	156	0	1	0	0	0	0	0	0	0	3703	1131	39	4		4	COL14A1	8	121344988	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	18070973	121344988	25019034	181	132644											
MTSS1	9788	broad.mit.edu	37	chr8	125565582	125565582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcagggctgtgctcccccCgctcttctggcccatctgga	10	17	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125565582	A	A	125565582	3	1	156	1	0	0	0	0	1	0	0	0	10056	652	23	1	352	1	MTSS1	8	125565582	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	4220594	125565582	20798440	182	132645											
FAM84B	157638	broad.mit.edu	37	chr8	127569531	127569531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtcattggagaaaatgtagGagaccccaatgcggggcccg	14	10	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127569531	T	T	127569531	3	4	156	1	0	0	0	0	1	0	0	0	5695	1174	41	3	832	3	FAM84B	8	127569531	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2003949	127569531	18794491	183	132646											
ZNF250	58500	broad.mit.edu	37	chr8	146115299	146115299	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgcagatacatagacgagGcctgctaaggtggcttaccc	11	11	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146115299	A	A	146115299	1	1	156	0	1	0	0	0	0	0	0	0	17921	1218	42	4		4	ZNF250	8	146115299	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	18545768	146115299	248723	184	132647											
DOCK8	81704	broad.mit.edu	37	chr9	404854	404854	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggatatttttgtgtctGccaacctcaactccacttac	6	11	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	404854	C	C	404854	1	2	156	0	1	0	0	0	0	0	0	0	4733	1334	46	4		4	DOCK8	9	404854	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08		404854	140808577	185	132648											
UNC13B	10497	broad.mit.edu	37	chr9	35377536	35377536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcatggccatgaaggacCgcatgaagatccgagagcga	12	9	1	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35377536	A	A	35377536	3	1	156	1	0	0	0	0	1	0	0	0	17111	652	23	1	1718	1	UNC13B	9	35377536	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	34972682	35377536	105835895	186	132649											
TLN1	7094	broad.mit.edu	37	chr9	35721933	35721933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagggaaaatgcagggtaGggagggaagtggtggtgtag	20	2	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35721933	A	A	35721933	1	1	156	0	1	0	0	0	0	0	0	0	16070	1015	35	4		4	TLN1	9	35721933	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	344397	35721933	105491498	187	132650											
TSTD2	158427	broad.mit.edu	37	chr9	100389587	100389587	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttcctgactagactttaCcttgagctggagagcaacct	9	10	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100389587	T	T	100389587	1	4	156	0	1	0	0	0	0	0	0	0	16801	522	18	4		4	TSTD2	9	100389587	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	64667654	100389587	40823844	188	132651											
OR13C8	138802	broad.mit.edu	37	chr9	107332316	107332316	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatggagtgatgactcccAtgcttaatcctctcatctat	6	11	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107332316	G	G	107332316	3	3	156	1	0	0	0	0	1	0	0	0	11032	217	8	5	870	5	OR13C8	9	107332316	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	6942729	107332316	33881115	189	132652											
SUSD1	64420	broad.mit.edu	37	chr9	114875010	114875010	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcatattcccatgggtgaCgtgtctgtcctagcaggaaa	10	10	2	1	rs113324731	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114875010	T	T	114875010	1	4	156	0	1	0	0	0	0	0	0	0	15525	551	19	4		4	SUSD1	9	114875010	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	7542694	114875010	26338421	190	132653											
GARNL3	84253	broad.mit.edu	37	chr9	130151342	130151342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccagtcacgcactccttgtCcctgtctcgcatggagatca	8	15	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130151342	A	A	130151342	3	1	156	1	0	0	0	0	1	0	0	0	6303	855	30	3	2789	3	GARNL3	9	130151342	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	15276332	130151342	11062089	191	132654											
LAMC3	10319	broad.mit.edu	37	chr9	133948700	133948700	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccacagaggcccgtgccctCgccaggaggtgagtcccaag	14	15	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133948700	A	A	133948700	2	1	156	1	0	0	0	0	0	0	0	1	8688	871	31	3		3	LAMC3	9	133948700	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	3797358	133948700	7264731	192	132655											
OLFM1	10439	broad.mit.edu	37	chr9	137982234	137982235	+	Intron	INS	-	TT	TT													tttgtatgtgtgtgtgtttgINStgtgtgtgtgtgtgtgtgta					rs149127682	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	137982235	TT	TT	137982234	6	5	156	0	1	1	1	0	0	0	0	0	10947	1392	48	0		0	OLFM1	9	137982234	Intron	INS	-	TCGA-50-5072-01A-21D-1855-08	4033534	137982234	3231197	193	132656											
DCLRE1C	64421	broad.mit.edu	37	chr10	14996072	14996072	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccaaggccagccctgaCcgcgccgccacttccgggaa	12	17	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14996072	A	A	14996072	1	1	156	0	1	0	0	0	0	0	0	0	4329	522	18	3		3	DCLRE1C	10	14996072	5'UTR	SNP	C	TCGA-50-5072-01A-21D-1855-08		14996072	120538675	194	132657											
PTPLA	9200	broad.mit.edu	37	chr10	17636278	17636278	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattgtatttgttaggaagtCttattgaaaacattcctgtt	7	5	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17636278	A	A	17636278	3	1	156	1	0	0	0	0	1	0	0	0	12880	913	32	3	164	3	PTPLA	10	17636278	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	2640206	17636278	117898469	195	132658											
SLC39A12	221074	broad.mit.edu	37	chr10	18280171	18280171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgatgggattaattggagGcatccatggatttttcttga	11	5	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18280171	T	T	18280171	3	4	156	1	0	0	0	0	1	0	0	0	14729	1203	42	3	1387	3	SLC39A12	10	18280171	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	643893	18280171	117254576	196	132659											
NEBL	10529	broad.mit.edu	37	chr10	21101768	21101768	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctttataggcagcatcgctGaccacctgggtgttcttcct	9	13	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21101768	A	A	21101768	2	1	156	1	0	0	0	0	0	0	0	1	10398	1277	45	4		4	NEBL	10	21101768	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	2821597	21101768	114432979	197	132660											
MLLT10	8028	broad.mit.edu	37	chr10	21940818	21940818	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaccacatatcaggcactTagaattctcatttctttttt	3	10	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21940818	G	G	21940818	1	3	156	0	1	0	0	0	0	0	0	0	9719	1769	61	5		5	MLLT10	10	21940818	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	839050	21940818	113593929	198	132661											
NRP1	8829	broad.mit.edu	37	chr10	33481381	33481381	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaaaaataagagacaagCaaagaaaggcaaatttgatc	8	4	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33481381	A	A	33481381	1	1	156	0	1	0	0	0	0	0	0	0	10755	725	25	3		3	NRP1	10	33481381	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	11540563	33481381	102053366	199	132662											
SYT15	83849	broad.mit.edu	37	chr10	46968629	46968629	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctctgatgccgggcaggGgtcccatggggcatcggccc	16	14	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46968629	A	A	46968629	3	1	156	1	0	0	0	0	1	0	0	0	15590	1232	43	4	1036	4	SYT15	10	46968629	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	13487248	46968629	88566118	200	132663											
ARHGAP22	58504	broad.mit.edu	37	chr10	49763467	49763467	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggccaggggcatggcaacaCccccaccagggctgcagagc	14	15	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49763467	G	G	49763467	1	3	156	0	1	0	0	0	0	0	0	0	874	522	18	4		4	ARHGAP22	10	49763467	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	2794838	49763467	85771280	201	132664											
ERCC6	2074	broad.mit.edu	37	chr10	50682336	50682336	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagatgaccccatgtaaagTaagattccctaggcaaggag	10	9	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50682336	A	A	50682336	1	1	156	0	1	0	0	0	0	0	0	0	5259	1653	57	5		5	ERCC6	10	50682336	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	918869	50682336	84852411	202	132665											
PCDH15	65217	broad.mit.edu	37	chr10	55566681	55566681	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctcccagtcgaacaggGgaagcaacttttaagttgtc	11	11	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55566681	T	T	55566681	2	4	156	1	0	0	0	0	0	0	0	1	11605	1219	43	2		2	PCDH15	10	55566681	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	4884345	55566681	79968066	203	132666											
PCDH15	65217	broad.mit.edu	37	chr10	55943219	55943219	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttacctgtatgacactgtcCccaggtctcatgtctgtata	8	11	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55943219	T	T	55943219	2	4	156	1	0	0	0	0	0	0	0	1	11605	610	22	4		4	PCDH15	10	55943219	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	376538	55943219	79591528	204	132667											
ZCCHC24	219654	broad.mit.edu	37	chr10	81192281	81192282	+	Intron	DNP	CC	AA	AA													ccgcaggtcagtaggggagcCcaagagcaccccctgggcca							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	81192282	AA	AA	81192281	1	1	156	0	1	0	0	0	0	0	0	0	17714	638	22	2		2	ZCCHC24	10	81192281	Intron	DNP	CC	TCGA-50-5072-01A-21D-1855-08	25249062	81192281	54342466	205	132668											
WAPAL	23063	broad.mit.edu	37	chr10	88227091	88227091	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtttcacagagccttcggAttttttctttaattttgttc	6	8	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88227091	G	G	88227091	3	3	156	1	0	0	0	0	1	0	0	0	17375	333	12	5	1301	5	WAPAL	10	88227091	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	7034810	88227091	47307656	206	132669											
CYP2C19	1557	broad.mit.edu	37	chr10	96580487	96580487	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgtttctcttagagaagttCcattatttaaatttctgtgc	6	7	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96580487	A	A	96580487	1	1	156	0	1	0	0	0	0	0	0	0	4199	870	30	3		3	CYP2C19	10	96580487	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	8353396	96580487	38954260	207	132670											
BLNK	29760	broad.mit.edu	37	chr10	97960807	97960807	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagttgggtttcccccttcTgtaaatcctgaaagggatca	9	10	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97960807	A	A	97960807	2	1	156	1	0	0	0	0	0	0	0	1	1453	1567	55	5		5	BLNK	10	97960807	Silent	SNP	T	TCGA-50-5072-01A-21D-1855-08	1380320	97960807	37573940	208	132671											
PIK3AP1	118788	broad.mit.edu	37	chr10	98388268	98388268	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctagaaggaaaaggagaCtaagagttatatattggtct	10	4	2	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98388268	T	T	98388268	1	4	156	0	1	0	0	0	0	0	0	0	12003	580	20	4		4	PIK3AP1	10	98388268	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	427461	98388268	37146479	209	132672											
PKD2L1	9033	broad.mit.edu	37	chr10	102054961	102054961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgccaagggcctatggagGccacaggagttgccaagcca	13	12	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102054961	T	T	102054961	1	4	156	0	1	0	0	0	0	0	0	0	12062	1218	42	3		3	PKD2L1	10	102054961	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	3666693	102054961	33479786	210	132673											
INPP5F	22876	broad.mit.edu	37	chr10	121582509	121582509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatgaagaaaaatgtgttGggtctttttaagataataga	9	1	1	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121582509	T	T	121582509	1	4	156	0	1	0	0	0	0	0	0	0	7828	1363	47	2		2	INPP5F	10	121582509	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	19527548	121582509	13952238	211	132674											
CTBP2	1488	broad.mit.edu	37	chr10	126694533	126694533	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accacgctgggcgcaaggtgGgaatccagagccgctgatgc	15	12	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126694533	C	C	126694533	1	2	156	0	1	0	0	0	0	0	0	0	4032	1247	43	4		4	CTBP2	10	126694533	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	5112024	126694533	8840214	212	132675											
STK32C	282974	broad.mit.edu	37	chr10	134040457	134040457	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accatgaacatgtcctcctcGtcctggaaggagtacctgtg	10	12	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134040457	A	A	134040457	2	1	156	1	0	0	0	0	0	0	0	1	15417	1136	40	4		4	STK32C	10	134040457	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	7345924	134040457	1494290	213	132676											
IFITM3	10410	broad.mit.edu	37	chr11	319883	319883	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgggatgacgatgagcagAatggtcatgaggatgcccag	15	7	1	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	319883	T	T	319883	2	4	156	1	0	0	0	0	0	0	0	1	7598	242	9	5		5	IFITM3	11	319883	Silent	SNP	A	TCGA-50-5072-01A-21D-1855-08		319883	134686633	214	132677											
CARS	833	broad.mit.edu	37	chr11	3059360	3059360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtggcaagctgcactgCgtgctgaatccgttcgagca	12	12	1	1	rs12796489	byFrequency;by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3059360	T	T	3059360	3	4	156	1	0	0	0	0	1	0	0	0	2683	768	27	4	1850	4	CARS	11	3059360	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	2739477	3059360	131947156	215	132678											
OR51S1	119692	broad.mit.edu	37	chr11	4869601	4869601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacataggatagaagagtatGggtatgctgagtgattggca	15	3	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4869601	T	T	4869601	3	4	156	1	0	0	0	0	1	0	0	0	11199	1348	47	2	136	2	OR51S1	11	4869601	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1810241	4869601	130136915	216	132679											
OR51A4	401666	broad.mit.edu	37	chr11	4967862	4967862	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagggaagggaagaaccaGgagcatgctcttaaaggaga	15	5	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4967862	C	C	4967862	3	2	156	1	0	0	0	0	1	0	0	0	11181	991	35	4	474	4	OR51A4	11	4967862	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	98261	4967862	130038654	217	132680											
OR51A2	401667	broad.mit.edu	37	chr11	4976475	4976475	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagggaagggaagaaccaGgagcatgctcttaaaggaga	15	5	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4976475	C	C	4976475	3	2	156	1	0	0	0	0	1	0	0	0	11180	991	35	4	474	4	OR51A2	11	4976475	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	8613	4976475	130030041	218	132681											
CCKBR	887	broad.mit.edu	37	chr11	6291371	6291371	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccatcgcactggagcggTacagcgccatctgccgacca	12	15	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6291371	A	A	6291371	3	1	156	1	0	0	0	0	1	0	0	0	2909	1638	57	5	467	5	CCKBR	11	6291371	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	1314896	6291371	128715145	219	132682											
OR2AG2	338755	broad.mit.edu	37	chr11	6789736	6789736	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatagcaatcagggatgcCaggatccaggatgtggccac	12	11	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6789736	A	A	6789736	2	1	156	1	0	0	0	0	0	0	0	1	11079	581	21	2		2	OR2AG2	11	6789736	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	498365	6789736	128216780	220	132683											
SPON1	10418	broad.mit.edu	37	chr11	14287127	14287127	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caccaaactgtgcggaggtgGaattcaggaacgttacatga	12	8	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14287127	A	A	14287127	3	1	156	1	0	0	0	0	1	0	0	0	15200	1174	41	4	2379	4	SPON1	11	14287127	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	7497391	14287127	120719389	221	132684											
MRGPRX4	117196	broad.mit.edu	37	chr11	18195148	18195148	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgagtatgctgagcgcCatcagcaccgagcgctgcct	13	14	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18195148	G	G	18195148	2	3	156	1	0	0	0	0	0	0	0	1	9863	581	21	4		4	MRGPRX4	11	18195148	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	3908021	18195148	116811368	222	132685											
UEVLD	55293	broad.mit.edu	37	chr11	18579657	18579657	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcaatcttagtttcccaAtatgtaaaatgagagacttg	6	6	2	2	rs111242999	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18579657	C	C	18579657	1	2	156	0	1	0	0	0	0	0	0	0	17059	116	4	5		5	UEVLD	11	18579657	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	384509	18579657	116426859	223	132686											
SPTY2D1	144108	broad.mit.edu	37	chr11	18655693	18655693	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccatgggccacacacattCcgaacttggaagactagggt	10	11	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18655693	T	T	18655693	1	4	156	0	1	0	0	0	0	0	0	0	15244	870	30	4		4	SPTY2D1	11	18655693	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	76036	18655693	116350823	224	132687											
SLC17A6	57084	broad.mit.edu	37	chr11	22380959	22380959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatcttttctatttcagGgttttcggagctgccatact	7	10	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22380959	T	T	22380959	3	4	156	1	0	0	0	0	1	0	0	0	14534	1246	43	2	473	2	SLC17A6	11	22380959	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	3725266	22380959	112625557	225	132688											
F2	2147	broad.mit.edu	37	chr11	46750358	46750358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgactacattcaccctgtGtgtctgcccgacagggagac	11	12	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46750358	T	T	46750358	2	4	156	1	0	0	0	0	0	0	0	1	5385	1364	48	3		3	F2	11	46750358	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	24369399	46750358	88256158	226	132689											
TRIM48	79097	broad.mit.edu	37	chr11	55032829	55032829	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctatttctataaaggacAcatgaaattcctgtggccct	7	9	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55032829	G	G	55032829	1	3	156	0	1	0	0	0	0	0	0	0	16648	174	6	5		5	TRIM48	11	55032829	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	8282471	55032829	79973687	227	132690											
OR8H2	390151	broad.mit.edu	37	chr11	55873303	55873303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatttttacttatttaaaacCaagaaagtcttattccttgg	5	6	1	1	rs143759988	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55873303	A	A	55873303	3	1	156	1	0	0	0	0	1	0	0	0	11332	594	21	2	787	2	OR8H2	11	55873303	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	840474	55873303	79133213	228	132691											
OR5J2	282775	broad.mit.edu	37	chr11	55944199	55944199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgttcctggtgatttacGccattaccttgttgaggaat	11	7	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55944199	T	T	55944199	3	4	156	1	0	0	0	0	1	0	0	0	11259	1087	38	3	108	3	OR5J2	11	55944199	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	70896	55944199	79062317	229	132692											
OR5AR1	219493	broad.mit.edu	37	chr11	56431534	56431534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctatggtcgttttgtgGccatttgtcgacccctccac	10	13	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56431534	T	T	56431534	3	4	156	1	0	0	0	0	1	0	0	0	11239	1203	42	3	375	3	OR5AR1	11	56431534	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	487335	56431534	78574982	230	132693											
GLYAT	10249	broad.mit.edu	37	chr11	58477979	58477979	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtacaacattgattgtagGaaagccagagtgaatgcagg	12	5	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58477979	T	T	58477979	1	4	156	0	1	0	0	0	0	0	0	0	6543	1189	41	3		3	GLYAT	11	58477979	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	2046445	58477979	76528537	231	132694											
STX3	6809	broad.mit.edu	37	chr11	59559626	59559626	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtgatgaccaaatacaAtgaagctcaagtggacttcc	11	8	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59559626	G	G	59559626	3	3	156	1	0	0	0	0	1	0	0	0	15464	101	4	5	426	5	STX3	11	59559626	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	1081647	59559626	75446890	232	132695											
MS4A13	503497	broad.mit.edu	37	chr11	60285518	60285518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttaaattacattatttcGgtactaacataattctcttc	3	7	1	0	rs75015159	byFrequency;by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60285518	T	T	60285518	1	4	156	0	1	0	0	0	0	0	0	0	9951	1131	39	1		1	MS4A13	11	60285518	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	725892	60285518	74720998	233	132696											
AHNAK	79026	broad.mit.edu	37	chr11	62287869	62287869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagccttgggcaggttcaCatccacatctgggccctctc	10	15	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62287869	A	A	62287869	3	1	156	1	0	0	0	0	1	0	0	0	414	478	17	3	3772	3	AHNAK	11	62287869	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	2002351	62287869	72718647	234	132697											
TCIRG1	10312	broad.mit.edu	37	chr11	67815338	67815338	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctgaccgccctcccctgCgttgccgcagtgatgcattc	10	18	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67815338	T	T	67815338	1	4	156	0	1	0	0	0	0	0	0	0	15825	783	27	4		4	TCIRG1	11	67815338	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	5527469	67815338	67191178	235	132698											
TPCN2	219931	broad.mit.edu	37	chr11	68839523	68839523	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatggaccctcttctccctGagggtgggtgctgtggctgc	15	12	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68839523	T	T	68839523	1	4	156	0	1	0	0	0	0	0	0	0	16520	1305	45	3		3	TPCN2	11	68839523	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	1024185	68839523	66166993	236	132699											
KRTAP5-8	57830	broad.mit.edu	37	chr11	71249653	71249653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcccaatttgctgccaGtgcaagatctgaggctctgc	11	11	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71249653	T	T	71249653	3	4	156	1	0	0	0	0	1	0	0	0	8639	1020	36	3	554	3	KRTAP5-8	11	71249653	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2410130	71249653	63756863	237	132700											
NUMA1	4926	broad.mit.edu	37	chr11	71733474	71733474	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcatggtcatctagaagcCaaacaggaggcagtcactga	11	10	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71733474	T	T	71733474	1	4	156	0	1	0	0	0	0	0	0	0	10845	609	21	4		4	NUMA1	11	71733474	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	483821	71733474	63273042	238	132701											
FZD4	8322	broad.mit.edu	37	chr11	86662265	86662265	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttacctttccagaattcacCaatctgttggaacacttctg	5	11	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86662265	T	T	86662265	2	4	156	1	0	0	0	0	0	0	0	1	6192	593	21	4		4	FZD4	11	86662265	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	14928791	86662265	48344251	239	132702											
HEPHL1	341208	broad.mit.edu	37	chr11	93836043	93836043	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatcatctgaaacacagaTaattctaataaattttttcc	2	7	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93836043	A	A	93836043	1	1	156	0	1	0	0	0	0	0	0	0	7122	1421	49	5		5	HEPHL1	11	93836043	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	7173778	93836043	41170473	240	132703											
CASP1	834	broad.mit.edu	37	chr11	104901057	104901057	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtataatagaacttacCgaagcagtgagatttttttt	8	4	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104901057	A	A	104901057	2	1	156	1	0	0	0	0	0	0	0	1	2694	666	23	1		1	CASP1	11	104901057	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	11065014	104901057	30105459	241	132704											
GUCY1A2	2977	broad.mit.edu	37	chr11	106558191	106558191	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaacaaagcaatgaaagAgacacaatctctttccaccc	4	13	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106558191	C	C	106558191	1	2	156	0	1	0	0	0	0	0	0	0	6958	319	11	5		5	GUCY1A2	11	106558191	3'UTR	SNP	A	TCGA-50-5072-01A-21D-1855-08	1657134	106558191	28448325	242	132705											
FOXR1	283150	broad.mit.edu	37	chr11	118849599	118849599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgacctgtttctgtgGcctgggctggagaccagggg	15	10	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118849599	T	T	118849599	1	4	156	0	1	0	0	0	0	0	0	0	6091	1218	42	3		3	FOXR1	11	118849599	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	12291408	118849599	16156917	243	132706											
C2CD2L	9854	broad.mit.edu	37	chr11	118983112	118983112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggagacagtaagtgagGggtgggaggggcacccctgg	20	7	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118983112	T	T	118983112	1	4	156	0	1	0	0	0	0	0	0	0	2175	1247	43	2		2	C2CD2L	11	118983112	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	133513	118983112	16023404	244	132707											
PVRL1	5818	broad.mit.edu	37	chr11	119547750	119547750	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggtaggatggttgcccCtcatcacccgtggtccagtc	13	12	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119547750	T	T	119547750	1	4	156	0	1	0	0	0	0	0	0	0	12947	696	24	4		4	PVRL1	11	119547750	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	564638	119547750	15458766	245	132708											
NTM	50863	broad.mit.edu	37	chr11	132016124	132016124	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgaggacctccctctgatGgctgctgtcgtctctcagtc	10	14	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132016124	C	C	132016124	1	2	156	0	1	0	0	0	0	0	0	0	10794	1363	47	4		4	NTM	11	132016124	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	12468374	132016124	2990392	246	132709											
KDM5A	5927	broad.mit.edu	37	chr12	420113	420113	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagtccgttctctccatgCccgtgctgctgctacctgtg	9	17	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	420113	T	T	420113	3	4	156	1	0	0	0	0	1	0	0	0	8203	739	26	4	1950	4	KDM5A	12	420113	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08		420113	133431782	247	132710											
VWF	7450	broad.mit.edu	37	chr12	6058417	6058417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacaatggtgggaagtcCtggcttaggcagggctctgg	15	9	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6058417	A	A	6058417	1	1	156	0	1	0	0	0	0	0	0	0	17373	696	24	2		2	VWF	12	6058417	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	5638304	6058417	127793478	248	132711											
VWF	7450	broad.mit.edu	37	chr12	6219953	6219953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttccattctctgggcccCagcttcctcatctaaaaatg	6	14	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6219953	A	A	6219953	1	1	156	0	1	0	0	0	0	0	0	0	17373	609	21	2		2	VWF	12	6219953	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	161536	6219953	127631942	249	132712											
PZP	5858	broad.mit.edu	37	chr12	9318500	9318500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtattaatgagcctatgcaAttgcgcattttacttaggtc	8	7	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9318500	T	T	9318500	1	4	156	0	1	0	0	0	0	0	0	0	12977	116	4	5		5	PZP	12	9318500	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	3098547	9318500	124533395	250	132713											
DUSP16	80824	broad.mit.edu	37	chr12	12630062	12630062	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccgtagatggctgaggcaGagtagaagtgtgaggactct	15	7	1	5			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12630062	A	A	12630062	3	1	156	1	0	0	0	0	1	0	0	0	4856	942	33	4	298	4	DUSP16	12	12630062	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	3311562	12630062	121221833	251	132714											
CDKN1B	1027	broad.mit.edu	37	chr12	12870966	12870966	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaagtggaatttcgattttCagaatcacaaacccctagag	8	9	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12870966	T	T	12870966	4	4	156	1	0	0	0	0	0	1	0	0	3189	827	29	4	195	4	CDKN1B	12	12870966	Nonsense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	240904	12870966	120980929	252	132715											
PTPRO	5800	broad.mit.edu	37	chr12	15656800	15656800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatacccagggcctttccaGgtgtctattcatgtatcttc	7	12	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15656800	T	T	15656800	1	4	156	0	1	0	0	0	0	0	0	0	12917	1015	35	2		2	PTPRO	12	15656800	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	2785834	15656800	118195095	253	132716											
LMO3	55885	broad.mit.edu	37	chr12	16757914	16757914	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtctccttgatttcgcTtaagtgtggacctggtgcgc	15	9	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16757914	G	G	16757914	1	3	156	0	1	0	0	0	0	0	0	0	8927	1624	56	5		5	LMO3	12	16757914	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	1101114	16757914	117093981	254	132717											
SOX5	6660	broad.mit.edu	37	chr12	23687401	23687401	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggcatcccagccatggCgatggctccagggtacacaa	14	12	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23687401	T	T	23687401	3	4	156	1	0	0	0	0	1	0	0	0	15068	768	27	4	251	4	SOX5	12	23687401	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	6929487	23687401	110164494	255	132718											
DDX11	1663	broad.mit.edu	37	chr12	31256447	31256447	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggggagggggtcgccGtgggaatgtgctgtaggggg	24	4	0	0	rs3903164		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31256447	A	A	31256447	1	1	156	0	1	0	0	0	0	0	0	0	4376	1160	40	4		4	DDX11	12	31256447	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	7569046	31256447	102595448	256	132719											
PDZRN4	29951	broad.mit.edu	37	chr12	41831547	41831547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatccgtgagtgcaagataCttagggaaagcgaagaagag	14	5	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41831547	A	A	41831547	1	1	156	0	1	0	0	0	0	0	0	0	11804	580	20	3		3	PDZRN4	12	41831547	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	10575100	41831547	92020348	257	132720											
TWF1	5756	broad.mit.edu	37	chr12	44191022	44191022	+	Intron	DEL	G	-	-													aaactacagctaagccctctGggcaagaaataagtaagaat							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44191022	-	-	44191022	6	5	156	0	1	1	0	1	0	0	0	0	16907	1363	47	0		0	TWF1	12	44191022	Intron	DEL	G	TCGA-50-5072-01A-21D-1855-08	2359475	44191022	89660873	258	132721											
RDH16	8608	broad.mit.edu	37	chr12	57346753	57346753	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatcatagccaccttcacCccaaagtaggagagttccct	6	14	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57346753	A	A	57346753	2	1	156	1	0	0	0	0	0	0	0	1	13302	610	22	2		2	RDH16	12	57346753	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	13155731	57346753	76505142	259	132722											
GEFT	115557	broad.mit.edu	37	chr12	58008213	58008213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggggcagggcctggggcGgggcttaggaatgggctggg	25	6	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58008213	T	T	58008213	1	4	156	0	1	0	0	0	0	0	0	0	6392	1131	39	1		1	GEFT	12	58008213	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	661460	58008213	75843682	260	132723											
FAM19A2	338811	broad.mit.edu	37	chr12	62104202	62104202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggttaatgggttacctaCaaaggaaggagaaaatatag	12	4	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62104202	A	A	62104202	1	1	156	0	1	0	0	0	0	0	0	0	5579	493	17	3		3	FAM19A2	12	62104202	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	4095989	62104202	71747693	261	132724											
CPSF6	11052	broad.mit.edu	37	chr12	69652445	69652445	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcctccacctcctggtcAggttctgcctcctcctctag	8	17	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69652445	G	G	69652445	3	3	156	1	0	0	0	0	1	0	0	0	3861	188	7	5	792	5	CPSF6	12	69652445	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	7548243	69652445	64199450	262	132725											
SLC25A3	5250	broad.mit.edu	37	chr12	98984430	98984430	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggatactgcgagcaaatgGggtggagggtgctctcctga	16	7	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98984430	C	C	98984430	1	2	156	0	1	0	0	0	0	0	0	0	14607	1247	43	4		4	SLC25A3	12	98984430	5'Flank	SNP	G	TCGA-50-5072-01A-21D-1855-08	29331985	98984430	34867465	263	132726											
SLC17A8	246213	broad.mit.edu	37	chr12	100795395	100795395	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccttcctctcctggaagcCctgttctgtggcacactggg	11	14	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100795395	T	T	100795395	1	4	156	0	1	0	0	0	0	0	0	0	14536	638	22	4		4	SLC17A8	12	100795395	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	1810965	100795395	33056500	264	132727											
MYBPC1	4604	broad.mit.edu	37	chr12	102036302	102036302	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttccagtatggaatcacCgacctgcgcggcatgctcaa	10	14	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102036302	G	G	102036302	2	3	156	1	0	0	0	0	0	0	0	1	10105	639	23	4		4	MYBPC1	12	102036302	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	1240907	102036302	31815593	265	132728											
NT5DC3	51559	broad.mit.edu	37	chr12	104179377	104179377	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaatggttagttattcacCaagctgaattcaatgaatta	8	5	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104179377	T	T	104179377	1	4	156	0	1	0	0	0	0	0	0	0	10787	609	21	4		4	NT5DC3	12	104179377	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	2143075	104179377	29672518	266	132729											
RFX4	5992	broad.mit.edu	37	chr12	107141163	107141163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccactaaagtaaggaagaaCaagggatatgagaactgtta	11	5	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107141163	A	A	107141163	1	1	156	0	1	0	0	0	0	0	0	0	13373	493	17	3		3	RFX4	12	107141163	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	2961786	107141163	26710732	267	132730											
ANKRD13A	88455	broad.mit.edu	37	chr12	110475116	110475116	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagttactgctgccaccaTgatgatgatagtagtgactc	10	8	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110475116	G	G	110475116	1	3	156	0	1	0	0	0	0	0	0	0	641	1479	51	5		5	ANKRD13A	12	110475116	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	3333953	110475116	23376779	268	132731											
ATXN2	6311	broad.mit.edu	37	chr12	111951340	111951340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttggggacatccttggaGgccctaaggaagaaacagtg	13	9	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111951340	A	A	111951340	3	1	156	1	0	0	0	0	1	0	0	0	1215	1000	35	4	2142	4	ATXN2	12	111951340	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1476224	111951340	21900555	269	132732											
OAS2	4939	broad.mit.edu	37	chr12	113448306	113448306	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagagatcatctggcaatcGcttttaaagactcggctcac	8	11	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113448306	A	A	113448306	1	1	156	0	1	0	0	0	0	0	0	0	10895	1102	38	4		4	OAS2	12	113448306	3'UTR	SNP	G	TCGA-50-5072-01A-21D-1855-08	1496966	113448306	20403589	270	132733											
KNTC1	9735	broad.mit.edu	37	chr12	123075812	123075812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatgatttttattgttgcGtttcgtctaaaaggtgttat	9	3	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123075812	T	T	123075812	1	4	156	0	1	0	0	0	0	0	0	0	8499	1160	40	3		3	KNTC1	12	123075812	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	9627506	123075812	10776083	271	132734											
NALCN	259232	broad.mit.edu	37	chr13	101944499	101944499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaatgacaaagcagagGgcaaccaaaaccaaacaaaa	7	9	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101944499	T	T	101944499	1	4	156	0	1	0	0	0	0	0	0	0	10242	1247	43	2		2	NALCN	13	101944499	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08		101944499	13225379	272	132735											
F10	2159	broad.mit.edu	37	chr13	113777249	113777249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggaaagtcgtaagtgccCctcgcccttcagacccaaaa	10	14	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113777249	T	T	113777249	1	4	156	0	1	0	0	0	0	0	0	0	5379	638	22	4		4	F10	13	113777249	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	11832750	113777249	1392629	273	132736											
GAS6	2621	broad.mit.edu	37	chr13	114549481	114549481	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtgctcccaggaaggcGcaaaggaggccgacttactt	12	12	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114549481	A	A	114549481	1	1	156	0	1	0	0	0	0	0	0	0	6311	1102	38	4		4	GAS6	13	114549481	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	772232	114549481	620397	274	132737											
POTEG	404785	broad.mit.edu	37	chr14	19553775	19553775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagagcaaagtgggcccttGgggagactacgacgacagcg	15	10	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19553775	T	T	19553775	3	4	156	1	0	0	0	0	1	0	0	0	12362	1357	47	2	361	2	POTEG	14	19553775	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08		19553775	87795765	275	132738											
OR4Q3	441669	broad.mit.edu	37	chr14	20215981	20215981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatctgtaaccctttgcGctaccttacagtcatgaacc	6	14	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20215981	T	T	20215981	3	4	156	1	0	0	0	0	1	0	0	0	11175	1087	38	3	397	3	OR4Q3	14	20215981	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	662206	20215981	87133559	276	132739											
CHD8	57680	broad.mit.edu	37	chr14	21876961	21876961	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgatagctccaatttcttCcaggcacttgcctgcggacg	10	12	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21876961	T	T	21876961	4	4	156	1	0	0	0	0	0	1	0	0	3362	856	30	4	5465	4	CHD8	14	21876961	Nonsense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	1660980	21876961	85472579	277	132740											
MYH7	4625	broad.mit.edu	37	chr14	23893886	23893886	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcctctgactgaaggaacAagacagtgagcccctgtgca	11	11	1	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23893886	C	C	23893886	1	2	156	0	1	0	0	0	0	0	0	0	10133	145	5	5		5	MYH7	14	23893886	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	2016925	23893886	83455654	278	132741											
RNF31	55072	broad.mit.edu	37	chr14	24626764	24626764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctcgtacgccctggccCgaggaggctgcatgcacttt	12	13	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24626764	A	A	24626764	2	1	156	1	0	0	0	0	0	0	0	1	13598	644	23	1		1	RNF31	14	24626764	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	732878	24626764	82722776	279	132742											
PRKD1	5587	broad.mit.edu	37	chr14	30066786	30066786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcatcttcattaaatGggaatgtgccgcttaggctt	9	8	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30066786	T	T	30066786	3	4	156	1	0	0	0	0	1	0	0	0	12624	1348	47	2	405	2	PRKD1	14	30066786	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	5440022	30066786	77282754	280	132743											
FSCB	84075	broad.mit.edu	37	chr14	44975251	44975251	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggaggctgaactttaaCagaattctccgcaactgcag	11	9	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44975251	A	A	44975251	3	1	156	1	0	0	0	0	1	0	0	0	6126	478	17	3	1541	3	FSCB	14	44975251	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	14908465	44975251	62374289	281	132744											
ERO1L	30001	broad.mit.edu	37	chr14	53133133	53133133	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgacattccatattttccAagcatctggtcccttgtaac	6	11	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53133133	T	T	53133133	3	4	156	1	0	0	0	0	1	0	0	0	5281	130	5	5	857	5	ERO1L	14	53133133	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	8157882	53133133	54216407	282	132745											
ARID4A	5926	broad.mit.edu	37	chr14	58825910	58825911	+	Frame_Shift_Ins	INS	-	A	A													tggacaaaggtggaccaaagINSaaaaaacagaagaaaaaagc					rs151278543		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58825911	A	A	58825910	7	5	156	1	0	1	1	0	0	0	0	0	921	933	33	0	1980	0	ARID4A	14	58825910	Frame_Shift_Ins	INS	-	TCGA-50-5072-01A-21D-1855-08	5692777	58825910	48523630	283	132746											
RTN1	6252	broad.mit.edu	37	chr14	60193922	60193922	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccggatggcatccagggCgctgggcttcatcgggggtg	17	12	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60193922	T	T	60193922	3	4	156	1	0	0	0	0	1	0	0	0	13836	768	27	4	943	4	RTN1	14	60193922	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	1368012	60193922	47155618	284	132747											
RAB15	376267	broad.mit.edu	37	chr14	65417042	65417042	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccttttccctccacttaCctgctgcccttgctctcttc	4	18	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65417042	A	A	65417042	5	1	156	1	0	0	0	0	0	0	1	0	13009	521	18	3	92	3	RAB15	14	65417042	Splice_Site	SNP	C	TCGA-50-5072-01A-21D-1855-08	5223120	65417042	41932498	285	132748											
FAM71D	161142	broad.mit.edu	37	chr14	67671600	67671600	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacagcatagatttcccaGaattcacagacatcaccgac	8	12	2	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67671600	T	T	67671600	4	4	156	1	0	0	0	0	0	1	0	0	5661	943	33	3	716	3	FAM71D	14	67671600	Nonsense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2254558	67671600	39677940	286	132749											
YLPM1	56252	broad.mit.edu	37	chr14	75279475	75279475	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accaccgggccgggagagcaGacctgagagagtgagtccta	15	11	0	5			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75279475	A	A	75279475	3	1	156	1	0	0	0	0	1	0	0	0	17613	942	33	4	5534	4	YLPM1	14	75279475	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	7607875	75279475	32070065	287	132750											
DIO2	1734	broad.mit.edu	37	chr14	80668730	80668730	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcaaagcatgcatcagatGtatcagttccttctcaatgc	6	11	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80668730	T	T	80668730	1	4	156	0	1	0	0	0	0	0	0	0	4565	1392	48	3		3	DIO2	14	80668730	3'UTR	SNP	G	TCGA-50-5072-01A-21D-1855-08	5389255	80668730	26680810	288	132751											
SEL1L	6400	broad.mit.edu	37	chr14	81961416	81961416	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaaagccctaggaacagGgtagttacctgatgattctg	11	8	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81961416	A	A	81961416	1	1	156	0	1	0	0	0	0	0	0	0	14123	1247	43	4		4	SEL1L	14	81961416	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	1292686	81961416	25388124	289	132752											
KCNK10	54207	broad.mit.edu	37	chr14	88658828	88658828	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatatagatgcacagaaaAcggtactgtgtcagtgactt	11	6	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88658828	G	G	88658828	1	3	156	0	1	0	0	0	0	0	0	0	8129	58	2	5		5	KCNK10	14	88658828	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	6697412	88658828	18690712	290	132753											
TDP1	55775	broad.mit.edu	37	chr14	90455406	90455415	+	Frame_Shift_Del	DEL	CAGGAAAAAG	-	-													ggggaaggaaagcaagactcCaggaaaaagctctgttcctc							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90455415	-	-	90455406	7	5	156	1	0	1	0	1	0	0	0	0	15850	594	21	0	1323	0	TDP1	14	90455406	Frame_Shift_Del	DEL	CAGGAAAAAG	TCGA-50-5072-01A-21D-1855-08	1796578	90455406	16894134	291	132754											
DICER1	23405	broad.mit.edu	37	chr14	95593179	95593179	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaaaaaaaaaagggaaTagatactaaaaaaaaaaaaa	4	2	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95593179	A	A	95593179	1	1	156	0	1	0	0	0	0	0	0	0	4561	1421	49	5		5	DICER1	14	95593179	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	5137773	95593179	11756361	292	132755											
C14orf68	283600	broad.mit.edu	37	chr14	100793492	100793492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctcctcctcctggcgGggccctagcctgacctggat	14	15	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100793492	T	T	100793492	1	4	156	0	1	0	0	0	0	0	0	0	1791	1247	43	2		2	C14orf68	14	100793492	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	5200313	100793492	6556048	293	132756											
C15orf2	23742	broad.mit.edu	37	chr15	24921231	24921232	+	Missense_Mutation	DNP	CC	AA	AA													tcgcccctaagaggccgtgtCctctccctcgggctgcggcc							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24921232	AA	AA	24921231	3	1	156	1	0	0	0	0	1	0	0	0	1797	855	30	3	219	3	C15orf2	15	24921231	Missense_Mutation	DNP	CC	TCGA-50-5072-01A-21D-1855-08		24921231	77610161	294	132757											
C15orf2	23742	broad.mit.edu	37	chr15	24924229	24924229	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggctgctgcaccacaagGggctagcaacattcctgtat	10	12	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24924229	A	A	24924229	3	1	156	1	0	0	0	0	1	0	0	0	1797	1232	43	4	3217	4	C15orf2	15	24924229	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	2998	24924229	77607163	295	132758											
OTUD7A	161725	broad.mit.edu	37	chr15	31819480	31819480	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatagagagctttccgtaaCaccaggtcccggtcgtgaaa	11	10	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31819480	A	A	31819480	2	1	156	1	0	0	0	0	0	0	0	1	11412	465	17	3		3	OTUD7A	15	31819480	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	6895251	31819480	70711912	296	132759											
SCG5	6447	broad.mit.edu	37	chr15	32972181	32972181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaaatcagaaattctaAcatcagctacaaatattccc	5	9	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32972181	T	T	32972181	1	4	156	0	1	0	0	0	0	0	0	0	14005	58	2	5		5	SCG5	15	32972181	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	1152701	32972181	69559211	297	132760											
RYR3	6263	broad.mit.edu	37	chr15	33920772	33920772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacttggctggactttcgGcaaggtatgtgtctcagggc	14	8	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33920772	T	T	33920772	3	4	156	1	0	0	0	0	1	0	0	0	13881	1203	42	3	2757	3	RYR3	15	33920772	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	948591	33920772	68610620	298	132761											
FBN1	2200	broad.mit.edu	37	chr15	48808598	48808598	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaacacaacagctgagcTgtagcttatgatcataggcc	8	10	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48808598	A	A	48808598	1	1	156	0	1	0	0	0	0	0	0	0	5759	1595	55	5		5	FBN1	15	48808598	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	14887826	48808598	53722794	299	132762											
CYP19A1	1588	broad.mit.edu	37	chr15	51503033	51503033	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagacacctgtctgagtttCttggggtaaagatcatttcc	9	10	3	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51503033	T	T	51503033	3	4	156	1	0	0	0	0	1	0	0	0	4181	913	32	4	31	4	CYP19A1	15	51503033	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	2694435	51503033	51028359	300	132763											
RSL24D1	51187	broad.mit.edu	37	chr15	55489023	55489023	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttaccttgcaatcgttgcgGacgaacatcatgccgtgtcc	9	13	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55489023	A	A	55489023	2	1	156	1	0	0	0	0	0	0	0	1	13812	1161	41	4		4	RSL24D1	15	55489023	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	3985990	55489023	47042369	301	132764											
CCPG1	9236	broad.mit.edu	37	chr15	55653056	55653056	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcttaaatactgattttcTgtagcaaggttcgttttctg	7	7	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55653056	A	A	55653056	2	1	156	1	0	0	0	0	0	0	0	1	2968	1567	55	5		5	CCPG1	15	55653056	Silent	SNP	T	TCGA-50-5072-01A-21D-1855-08	164033	55653056	46878336	302	132765											
PRTG	283659	broad.mit.edu	37	chr15	55967895	55967895	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaaacctaaattaaagaaTccatgttttaaaatgacaga	4	5	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55967895	A	A	55967895	1	1	156	0	1	0	0	0	0	0	0	0	12744	1450	50	5		5	PRTG	15	55967895	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	314839	55967895	46563497	303	132766											
SLC24A1	9187	broad.mit.edu	37	chr15	65918051	65918051	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcattggcacttgttccCtcttctcccgagagatcctc	7	14	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65918051	T	T	65918051	3	4	156	1	0	0	0	0	1	0	0	0	14579	681	24	4		4	SLC24A1	15	65918051	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	9950156	65918051	36613341	304	132767											
STRA6	64220	broad.mit.edu	37	chr15	74472410	74472410	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgggcaggtgggttgacCttccctgccctcagggctgg	16	11	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74472410	A	A	74472410	1	1	156	0	1	0	0	0	0	0	0	0	15440	696	24	2		2	STRA6	15	74472410	3'UTR	SNP	C	TCGA-50-5072-01A-21D-1855-08	8554359	74472410	28058982	305	132768											
ARID3B	10620	broad.mit.edu	37	chr15	74865122	74865122	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctaagcatcttcatctttgCcctaaatgattgccttgccc	6	13	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74865122	T	T	74865122	1	4	156	0	1	0	0	0	0	0	0	0	919	754	26	4		4	ARID3B	15	74865122	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	392712	74865122	27666270	306	132769											
SIN3A	25942	broad.mit.edu	37	chr15	75682259	75682259	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctggcctaaatggcatttGaaagtatgaacactaggtat	10	6	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75682259	A	A	75682259	1	1	156	0	1	0	0	0	0	0	0	0	14438	1305	45	4		4	SIN3A	15	75682259	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	817137	75682259	26849133	307	132770											
ODF3L1	161753	broad.mit.edu	37	chr15	76019384	76019384	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagagccctcccttccCgccactccctttcaggcctg	7	20	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76019384	A	A	76019384	1	1	156	0	1	0	0	0	0	0	0	0	10926	667	23	1		1	ODF3L1	15	76019384	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	337125	76019384	26512008	308	132771											
ARNT2	9915	broad.mit.edu	37	chr15	80844828	80844828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagttaaagatgtgaccagGgatagatatttgaacacttt	9	5	0	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80844828	T	T	80844828	1	4	156	0	1	0	0	0	0	0	0	0	970	1247	43	2		2	ARNT2	15	80844828	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	4825444	80844828	21686564	309	132772											
ANPEP	290	broad.mit.edu	37	chr15	90347501	90347501	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacctggtgggccagctcatGagcaatcacagtgaccaccc	10	14	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90347501	A	A	90347501	3	1	156	1	0	0	0	0	1	0	0	0	710	1290	45	4	1805	4	ANPEP	15	90347501	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	9502673	90347501	12183891	310	132773											
FURIN	5045	broad.mit.edu	37	chr15	91425068	91425073	+	In_Frame_Del	DEL	GCGAGA	-	-													agaagaggacgagggccgggGcgagaggaccgcctttatca							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	91425073	-	-	91425068	7	5	156	1	0	1	0	1	0	0	0	0	6159	1203	42	0	2403	0	FURIN	15	91425068	In_Frame_Del	DEL	GCGAGA	TCGA-50-5072-01A-21D-1855-08	1077567	91425068	11106324	311	132774											
TTC23	64927	broad.mit.edu	37	chr15	99759043	99759043	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcatcagctttttacttGgcgtgtaagtgttacgtgaa	10	7	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99759043	A	A	99759043	1	1	156	0	1	0	0	0	0	0	0	0	16816	1363	47	4		4	TTC23	15	99759043	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	8333975	99759043	2772349	312	132775											
PKD1	5310	broad.mit.edu	37	chr16	2140653	2140653	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagctgagctaagacgccctCcccggccgcgcagtcaccta	11	17	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2140653	T	T	2140653	1	4	156	0	1	0	0	0	0	0	0	0	12058	870	30	4		4	PKD1	16	2140653	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08		2140653	88214100	313	132776											
A2BP1	54715	broad.mit.edu	37	chr16	7637389	7637389	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacaactgcactgtcttaatCagctcattgtgaaaatacac	5	10	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7637389	A	A	7637389	1	1	156	0	1	0	0	0	0	0	0	0	3	841	29	3		3	A2BP1	16	7637389	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	5496736	7637389	82717364	314	132777											
ABCC1	4363	broad.mit.edu	37	chr16	16218859	16218859	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggattccagctccaacagGaatgggggagaggaacttga	14	7	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16218859	T	T	16218859	1	4	156	0	1	0	0	0	0	0	0	0	49	1189	41	3		3	ABCC1	16	16218859	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	8581470	16218859	74135894	315	132778											
C16orf88	400506	broad.mit.edu	37	chr16	19725912	19725912	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttccttcttgtgttttTtgagcttcttgccaactctg	6	9	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19725912	C	C	19725912	3	2	156	1	0	0	0	0	1	0	0	0	1855	1841	64	5	946	5	C16orf88	16	19725912	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	3507053	19725912	70628841	316	132779											
DNAH3	55567	broad.mit.edu	37	chr16	21156636	21156636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcgatggaatcactgggtCcacggtggtgatgctgttct	15	8	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21156636	T	T	21156636	3	4	156	1	0	0	0	0	1	0	0	0	4643	855	30	4	12275	4	DNAH3	16	21156636	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	1430724	21156636	69198117	317	132780											
PRKCB	5579	broad.mit.edu	37	chr16	23999883	23999883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgtcacattctcctgccCtggcgctgacaagggtccag	10	13	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23999883	A	A	23999883	3	1	156	1	0	0	0	0	1	0	0	0	12614	681	24	2	270	2	PRKCB	16	23999883	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	2843247	23999883	66354870	318	132781											
ARMC5	79798	broad.mit.edu	37	chr16	31476170	31476170	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacgattggccggcaccacGtgcccggcccactctccaca	10	18	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31476170	A	A	31476170	3	1	156	1	0	0	0	0	1	0	0	0	958	1145	40	4	1840	4	ARMC5	16	31476170	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	7476287	31476170	58878583	319	132782											
CDH8	1006	broad.mit.edu	37	chr16	61689341	61689341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttatgaatcagaaaaaGggtgaccggtaggctatgaa	11	5	2	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61689341	T	T	61689341	1	4	156	0	1	0	0	0	0	0	0	0	3146	1015	35	2		2	CDH8	16	61689341	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	30213171	61689341	28665412	320	132783											
RLTPR	146206	broad.mit.edu	37	chr16	67681740	67681740	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgctgagtgaccccgaccCaccaccaggaatgagggctc	11	15	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67681740	T	T	67681740	1	4	156	0	1	0	0	0	0	0	0	0	13505	609	21	4		4	RLTPR	16	67681740	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	5992399	67681740	22673013	321	132784											
CNTNAP4	85445	broad.mit.edu	37	chr16	76350353	76350353	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgccttgcctcaggcatcCttcagcagttcttccgagct	8	15	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76350353	T	T	76350353	2	4	156	1	0	0	0	0	0	0	0	1	3681	668	24	4		4	CNTNAP4	16	76350353	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	8668613	76350353	14004400	322	132785											
ZCCHC14	23174	broad.mit.edu	37	chr16	87451247	87451247	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagcccgcgctgcccgcaTgggagcagtgaggcaagggg	18	12	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87451247	A	A	87451247	3	1	156	1	0	0	0	0	1	0	0	0	17709	1464	51	5	2082	5	ZCCHC14	16	87451247	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	11100894	87451247	2903506	323	132786											
PFAS	5198	broad.mit.edu	37	chr17	8159806	8159806	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgggttagtgtaggtcccaGaaaggaagcaaggtccatga	14	6	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8159806	T	T	8159806	1	4	156	0	1	0	0	0	0	0	0	0	11849	957	33	3		3	PFAS	17	8159806	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08		8159806	73035404	324	132787											
ZNF18	7566	broad.mit.edu	37	chr17	11895767	11895767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctctgcttacccattgcCacagtctctgggggtccccc	8	18	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11895767	A	A	11895767	3	1	156	1	0	0	0	0	1	0	0	0	17873	595	21	2	1293	2	ZNF18	17	11895767	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	3735961	11895767	69299443	325	132788											
MAPK7	5598	broad.mit.edu	37	chr17	19286510	19286510	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagatggactccccaatgcTgctggctgacctgcctgacc	10	16	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19286510	G	G	19286510	3	3	156	1	0	0	0	0	1	0	0	0	9374	1580	55	5	2439	5	MAPK7	17	19286510	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	7390743	19286510	61908700	326	132789											
NOS2	4843	broad.mit.edu	37	chr17	26092481	26092481	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagggatggctgtcaccggCaggcccaggctcagcccctc	13	16	2	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26092481	G	G	26092481	1	3	156	0	1	0	0	0	0	0	0	0	10638	725	25	4		4	NOS2	17	26092481	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	6805971	26092481	55102729	327	132790											
NF1	4763	broad.mit.edu	37	chr17	29554590	29554590	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagcaacaaagctaatccTtaactatccaaaagccaaaa	3	11	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29554590	A	A	29554590	3	1	156	1	0	0	0	0	1	0	0	0	10451	1609	56	5	2514	5	NF1	17	29554590	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	3462109	29554590	51640620	328	132791											
MED1	5469	broad.mit.edu	37	chr17	37588169	37588169	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaactcaagggatcatgTagaattaaggttttagcagt	10	4	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37588169	C	C	37588169	1	2	156	0	1	0	0	0	0	0	0	0	9518	1653	57	5		5	MED1	17	37588169	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	8033579	37588169	43607041	329	132792											
MED24	9862	broad.mit.edu	37	chr17	38184129	38184129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacacccctcctcagggccCactgggcctgcggatgcaca	10	19	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38184129	A	A	38184129	1	1	156	0	1	0	0	0	0	0	0	0	9535	609	21	2		2	MED24	17	38184129	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	595960	38184129	43011081	330	132793											
MTMR4	9110	broad.mit.edu	37	chr17	56573321	56573321	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctggagctggtcccttagTctcttctaggactttgatct	10	10	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56573321	G	G	56573321	3	3	156	1	0	0	0	0	1	0	0	0	10040	1667	58	5	1421	5	MTMR4	17	56573321	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	18389192	56573321	24621889	331	132794											
MRC2	9902	broad.mit.edu	37	chr17	60759205	60759205	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgccattgcagatggacaGatggttccattataaacttc	8	9	0	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60759205	T	T	60759205	3	4	156	1	0	0	0	0	1	0	0	0	9852	942	33	3	2784	3	MRC2	17	60759205	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	4185884	60759205	20436005	332	132795											
CCDC57	284001	broad.mit.edu	37	chr17	80151979	80151979	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcagcctttgccccggcttCcttcagagcctccagctctt	8	17	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80151979	T	T	80151979	3	4	156	1	0	0	0	0	1	0	0	0	2855	864	30	4	2144	4	CCDC57	17	80151979	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	19392774	80151979	1043231	333	132796											
FN3KRP	79672	broad.mit.edu	37	chr17	80684579	80684579	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccacctctgagtctgattCtgggtgggaagcgggtgcct	16	10	3	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80684579	T	T	80684579	1	4	156	0	1	0	0	0	0	0	0	0	6022	928	32	4		4	FN3KRP	17	80684579	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	532600	80684579	510631	334	132797											
DLGAP1	9229	broad.mit.edu	37	chr18	3502639	3502639	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggtcttggatgagcattaGgattctgcacaagagaaaga	13	5	2	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3502639	C	C	3502639	3	2	156	1	0	0	0	0	1	0	0	0	4599	1000	35	4	365	4	DLGAP1	18	3502639	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08		3502639	74574609	335	132798											
MC2R	4158	broad.mit.edu	37	chr18	13884810	13884810	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcaagaggacatgaagCacaaagggggcccagcagaa	13	9	2	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13884810	T	T	13884810	2	4	156	1	0	0	0	0	0	0	0	1	9457	697	25	4		4	MC2R	18	13884810	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	10382171	13884810	64192438	336	132799											
NPC1	4864	broad.mit.edu	37	chr18	21119878	21119878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccttggaagaagtgtagtCgtgcccttcctccaggacaa	10	13	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21119878	A	A	21119878	3	1	156	1	0	0	0	0	1	0	0	0	10665	884	31	3	1176	3	NPC1	18	21119878	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	7235068	21119878	56957370	337	132800											
SLC39A6	25800	broad.mit.edu	37	chr18	33694349	33694349	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtggatgagcatgagctatCatgacctcttcttcttccaa	8	10	4	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33694349	A	A	33694349	3	1	156	1	0	0	0	0	1	0	0	0	14736	826	29	3	741	3	SLC39A6	18	33694349	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	12574471	33694349	44382899	338	132801											
NARS	4677	broad.mit.edu	37	chr18	55269675	55269675	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactatcaaagatacgcattGagcctcccacaatctcacca	4	15	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55269675	A	A	55269675	3	1	156	1	0	0	0	0	1	0	0	0	10264	1294	45	4	227	4	NARS	18	55269675	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	21575326	55269675	22807573	339	132802											
KIAA1468	57614	broad.mit.edu	37	chr18	59895607	59895607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactctgttcagcctcctttGgatcagttgccccacaaaga	8	13	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59895607	T	T	59895607	3	4	156	1	0	0	0	0	1	0	0	0	8306	1339	47	2	1254	2	KIAA1468	18	59895607	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	4625932	59895607	18181641	340	132803											
SERPINB13	5275	broad.mit.edu	37	chr18	61264451	61264451	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtaactgaggaaggcaccGaggctgcagctgccaccggc	14	13	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61264451	T	T	61264451	4	4	156	1	0	0	0	0	0	1	0	0	14213	1059	37	3	1056	3	SERPINB13	18	61264451	Nonsense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1368844	61264451	16812797	341	132804											
DSEL	92126	broad.mit.edu	37	chr18	65181026	65181026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccataggccacaccttcatCcaaagaaccatcaacaatat	3	14	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65181026	A	A	65181026	3	1	156	1	0	0	0	0	1	0	0	0	4815	855	30	3	2822	3	DSEL	18	65181026	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	3916575	65181026	12896222	342	132805											
CCDC102B	79839	broad.mit.edu	37	chr18	66504350	66504350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaaaggaacagtgccaGggaggaaggaagacaactca	14	7	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66504350	T	T	66504350	3	4	156	1	0	0	0	0	1	0	0	0	2763	1000	35	2	352	2	CCDC102B	18	66504350	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1323324	66504350	11572898	343	132806											
STK11	6794	broad.mit.edu	37	chr19	1218415	1218415	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgtcctctctgtcccaGggaaattcaactactgagga	8	14	2	1	rs112675807		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1218415	T	T	1218415	5	4	156	1	0	0	0	0	0	0	1	0	15405	1014	35	2	296	2	STK11	19	1218415	Splice_Site	SNP	G	TCGA-50-5072-01A-21D-1855-08		1218415	57910568	344	132807											
DOT1L	84444	broad.mit.edu	37	chr19	2191240	2191240	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtggacttggggagcgGtgagtgtcgcccgccatgcc	17	10	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2191240	T	T	2191240	5	4	156	1	0	0	0	0	0	0	1	0	4749	1275	44	3	512	3	DOT1L	19	2191240	Splice_Site	SNP	G	TCGA-50-5072-01A-21D-1855-08	972825	2191240	56937743	345	132808											
TMPRSS9	360200	broad.mit.edu	37	chr19	2413566	2413566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgtcaatgatcagcccCaggtgctctgtgagcttgtg	13	9	3	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2413566	A	A	2413566	1	1	156	0	1	0	0	0	0	0	0	0	16376	609	21	2		2	TMPRSS9	19	2413566	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	222326	2413566	56715417	346	132809											
LRG1	116844	broad.mit.edu	37	chr19	4539946	4539946	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgtcctgtatctccgcAtggtctggcgttcaaacctg	11	11	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4539946	T	T	4539946	1	4	156	0	1	0	0	0	0	0	0	0	9029	232	8	5		5	LRG1	19	4539946	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	2126380	4539946	54589037	347	132810											
ARRDC5	645432	broad.mit.edu	37	chr19	4891298	4891298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgacaaccttggtggtGttgaagcgggtcacgggggt	18	7	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4891298	T	T	4891298	3	4	156	1	0	0	0	0	1	0	0	0	990	1368	48	3	243	3	ARRDC5	19	4891298	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	351352	4891298	54237685	348	132811											
ACER1	125981	broad.mit.edu	37	chr19	6312375	6312375	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctcccgactgtcacagAcctgaaccacacctccctac	5	20	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6312375	T	T	6312375	1	4	156	0	1	0	0	0	0	0	0	0	138	290	10	5		5	ACER1	19	6312375	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	1421077	6312375	52816608	349	132812											
SMARCA4	6597	broad.mit.edu	37	chr19	11136141	11136141	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgaacaccatcatgcagcTgcggaagatctgcaaccacc	9	13	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11136141	C	C	11136141	3	2	156	1	0	0	0	0	1	0	0	0	14884	1580	55	5	3207	5	SMARCA4	19	11136141	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	4823766	11136141	47992842	350	132813											
ZSWIM4	65249	broad.mit.edu	37	chr19	13941261	13941261	+	Frame_Shift_Del	DEL	C	-	-													tcggccttcgaggcggcctaCcagatcgtgctggacgcggc							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13941261	-	-	13941261	7	5	156	1	0	1	0	1	0	0	0	0	18372	518	18	0	2417	0	ZSWIM4	19	13941261	Frame_Shift_Del	DEL	C	TCGA-50-5072-01A-21D-1855-08	2805120	13941261	45187722	351	132814											
SIN3B	23309	broad.mit.edu	37	chr19	16942395	16942395	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaacgcttttcttcccctCggatatagaatagacattcc	5	12	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16942395	T	T	16942395	2	4	156	1	0	0	0	0	0	0	0	1	14439	871	31	4		4	SIN3B	19	16942395	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	3001134	16942395	42186588	352	132815											
MAST3	23031	broad.mit.edu	37	chr19	18235123	18235123	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagcttcatcgtccagcttGtccggaaactgctgatcatc	8	13	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18235123	C	C	18235123	3	2	156	1	0	0	0	0	1	0	0	0	9418	1377	48	4	839	4	MAST3	19	18235123	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1292728	18235123	40893860	353	132816											
KIAA0355	9710	broad.mit.edu	37	chr19	34787446	34787446	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccttgatagcctcggcaCgtgcactcatggccttggca	13	13	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34787446	T	T	34787446	1	4	156	0	1	0	0	0	0	0	0	0	8240	551	19	4		4	KIAA0355	19	34787446	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	16552323	34787446	24341537	354	132817											
GPI	2821	broad.mit.edu	37	chr19	34868453	34868453	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtacacaggcaagaccatcAcggacgtcatcaacattggc	10	12	3	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34868453	G	G	34868453	3	3	156	1	0	0	0	0	1	0	0	0	6676	159	6	5	587	5	GPI	19	34868453	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	81007	34868453	24260530	355	132818											
ATP4A	495	broad.mit.edu	37	chr19	36053478	36053478	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactctggggtgccccgtggTggccgcagtgcgttgggccc	17	13	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36053478	C	C	36053478	2	2	156	1	0	0	0	0	0	0	0	1	1149	1683	59	5		5	ATP4A	19	36053478	Silent	SNP	T	TCGA-50-5072-01A-21D-1855-08	1185025	36053478	23075505	356	132819											
ZNF382	84911	broad.mit.edu	37	chr19	37117732	37117732	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttagaaggaagtcatacctCattgaacatcagcgaattca	7	8	4	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37117732	T	T	37117732	2	4	156	1	0	0	0	0	0	0	0	1	17999	813	29	4		4	ZNF382	19	37117732	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	1064254	37117732	22011251	357	132820											
ZFP30	22835	broad.mit.edu	37	chr19	38126075	38126075	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccagtatgaatactttgaTgttgggtaagttgtgaaagc	11	5	0	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38126075	C	C	38126075	3	2	156	1	0	0	0	0	1	0	0	0	17770	1464	51	5	196	5	ZFP30	19	38126075	Missense_Mutation	SNP	T	TCGA-50-5072-01A-21D-1855-08	1008343	38126075	21002908	358	132821											
SIRT2	22933	broad.mit.edu	37	chr19	39371628	39371628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaacctccctgccgcccCccatagctggggaggtgacc	11	17	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39371628	A	A	39371628	1	1	156	0	1	0	0	0	0	0	0	0	14451	638	22	2		2	SIRT2	19	39371628	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	1245553	39371628	19757355	359	132822											
PAPL	390928	broad.mit.edu	37	chr19	39589082	39589082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactcccggtctaccctctGtccctttctccccaggtgag	7	18	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39589082	T	T	39589082	1	4	156	0	1	0	0	0	0	0	0	0	11521	1392	48	3		3	PAPL	19	39589082	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	217454	39589082	19539901	360	132823											
FCGBP	8857	broad.mit.edu	37	chr19	40408236	40408236	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccctccctgcccctcCggctctccctcactcacgac	4	25	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40408236	T	T	40408236	1	4	156	0	1	0	0	0	0	0	0	0	5835	667	23	4		4	FCGBP	19	40408236	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	819154	40408236	18720747	361	132824											
FCGBP	8857	broad.mit.edu	37	chr19	40420130	40420130	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcacctgcccatctgctGcttggaagggcagatactga	11	13	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40420130	A	A	40420130	3	1	156	1	0	0	0	0	1	0	0	0	5835	1319	46	4	13477	4	FCGBP	19	40420130	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	11894	40420130	18708853	362	132825											
ZNF780A	284323	broad.mit.edu	37	chr19	40581425	40581425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaaggccatcccacattcCttacatacaaagggtttctc	6	13	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40581425	A	A	40581425	3	1	156	1	0	0	0	0	1	0	0	0	18281	680	24	2	1132	2	ZNF780A	19	40581425	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	161295	40581425	18547558	363	132826											
LTBP4	8425	broad.mit.edu	37	chr19	41105543	41105543	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccgctcctcctcccttcCcctctccctctctctccccc	1	26	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41105543	T	T	41105543	1	4	156	0	1	0	0	0	0	0	0	0	9163	638	22	4		4	LTBP4	19	41105543	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	524118	41105543	18023440	364	132827											
NUMBL	9253	broad.mit.edu	37	chr19	41190419	41190419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgtaggctggcttcctcCgccgcaggctctgccgtaac	12	16	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41190419	A	A	41190419	3	1	156	1	0	0	0	0	1	0	0	0	10847	652	23	1	1709	1	NUMBL	19	41190419	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	84876	41190419	17938564	365	132828											
ZNF180	7733	broad.mit.edu	37	chr19	44988650	44988650	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaaggaaagaatcctgAaaaggcaaaacagatgagaa	12	4	0	5			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44988650	G	G	44988650	1	3	156	0	1	0	0	0	0	0	0	0	17874	261	9	5		5	ZNF180	19	44988650	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	3798231	44988650	14140333	366	132829											
ZC3H4	23211	broad.mit.edu	37	chr19	47585439	47585439	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgctggcactaaaggatAtcgtgcatataagggcagtt	12	6	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47585439	T	T	47585439	5	4	156	1	0	0	0	0	0	0	1	0	17696	463	16	5	2603	5	ZC3H4	19	47585439	Splice_Site	SNP	A	TCGA-50-5072-01A-21D-1855-08	2596789	47585439	11543544	367	132830											
SULT2A1	6822	broad.mit.edu	37	chr19	48389328	48389328	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actccaatcatgcactgaatGgacaggaacacaaccacagc	7	13	1	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48389328	A	A	48389328	1	1	156	0	1	0	0	0	0	0	0	0	15499	1363	47	4		4	SULT2A1	19	48389328	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	803889	48389328	10739655	368	132831											
GRIN2D	2906	broad.mit.edu	37	chr19	48922550	48922550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcctcactgtggtcgccGtcactgttttcatcttcgag	10	12	4	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48922550	T	T	48922550	3	4	156	1	0	0	0	0	1	0	0	0	6848	1145	40	3	1821	3	GRIN2D	19	48922550	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	533222	48922550	10206433	369	132832											
MYH14	79784	broad.mit.edu	37	chr19	50779926	50779926	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctcatattttaaggaaaCatgaaaaggagaaacaacca	7	8	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50779926	T	T	50779926	1	4	156	0	1	0	0	0	0	0	0	0	10127	493	17	4		4	MYH14	19	50779926	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	1857376	50779926	8349057	370	132833											
VN1R2	317701	broad.mit.edu	37	chr19	53762797	53762797	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatagacgattctttcAtgatttcaggaaaatgtgaa	8	4	3	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53762797	G	G	53762797	3	3	156	1	0	0	0	0	1	0	0	0	17306	217	8	5	1171	5	VN1R2	19	53762797	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	2982871	53762797	5366186	371	132834											
LRRN4	164312	broad.mit.edu	37	chr20	6033166	6033166	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctccaggtggccgagctCggaagtgctcagggcgcgca	16	13	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6033166	T	T	6033166	3	4	156	1	0	0	0	0	1	0	0	0	9124	893	31	4	1958	4	LRRN4	20	6033166	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08		6033166	56992354	372	132835											
C20orf26	26074	broad.mit.edu	37	chr20	20168567	20168567	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatatattcctctcctTacccaggtccattaatataa	2	10	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20168567	A	A	20168567	1	1	156	0	1	0	0	0	0	0	0	0	2128	1769	61	5		5	C20orf26	20	20168567	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	14135401	20168567	42856953	373	132836											
C20orf4	25980	broad.mit.edu	37	chr20	34843634	34843635	+	Missense_Mutation	DNP	GG	TT	TT													gaggactgtgccccggtggtGgtggagctccctgagggcat							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	34843635	TT	TT	34843634	3	4	156	1	0	0	0	0	1	0	0	0	2133	1335	47	2	1132	2	C20orf4	20	34843634	Missense_Mutation	DNP	GG	TCGA-50-5072-01A-21D-1855-08	14675067	34843634	28181886	374	132837											
KIAA1755	85449	broad.mit.edu	37	chr20	36869547	36869547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccgatttcccaaggaaggtCcttcattggcctctgagaga	10	12	2	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36869547	A	A	36869547	3	1	156	1	0	0	0	0	1	0	0	0	8327	855	30	3	2664	3	KIAA1755	20	36869547	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	2025913	36869547	26155973	375	132838											
BPI	671	broad.mit.edu	37	chr20	36963985	36963985	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctcctggtcctcaccatCggtctctgtcacagagaaac	7	14	4	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36963985	A	A	36963985	1	1	156	0	1	0	0	0	0	0	0	0	1499	899	31	3		3	BPI	20	36963985	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	94438	36963985	26061535	376	132839											
SALL4	57167	broad.mit.edu	37	chr20	50418834	50418834	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccagctcccccgccgcGggcgccgctggggccgcatc	13	21	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50418834	T	T	50418834	2	4	156	1	0	0	0	0	0	0	0	1	13924	1103	39	1		1	SALL4	20	50418834	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	13454849	50418834	12606686	377	132840											
ZNF831	128611	broad.mit.edu	37	chr20	57768499	57768499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagactgtcctgagatggCccagcaggggctcaggggag	16	12	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57768499	A	A	57768499	3	1	156	1	0	0	0	0	1	0	0	0	18314	739	26	3	2427	3	ZNF831	20	57768499	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	7349665	57768499	5257021	378	132841											
SAMSN1	64092	broad.mit.edu	37	chr21	15884835	15884835	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacaccttctctgtgtgGgtcccaatcacagggtcact	11	12	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15884835	T	T	15884835	2	4	156	1	0	0	0	0	0	0	0	1	13941	1219	43	2		2	SAMSN1	21	15884835	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08		15884835	32245060	379	132842											
PIGP	51227	broad.mit.edu	37	chr21	38444638	38444638	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagacatagggagaaagaaTcaacagttcatgtgtgcaca	11	6	2	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38444638	C	C	38444638	1	2	156	0	1	0	0	0	0	0	0	0	11990	1450	50	5		5	PIGP	21	38444638	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08	22559803	38444638	9685257	380	132843											
SH3BGR	6450	broad.mit.edu	37	chr21	40863457	40863457	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttttcttcagtcttctaAggcctcagctacttacatgg	7	10	5	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40863457	T	T	40863457	1	4	156	0	1	0	0	0	0	0	0	0	14353	87	3	5		5	SH3BGR	21	40863457	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	2418819	40863457	7266438	381	132844											
GNB1L	54584	broad.mit.edu	37	chr22	19808925	19808925	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaagggagggcgtgtgagTgactgcgtccctattctcac	13	11	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19808925	A	A	19808925	1	1	156	0	1	0	0	0	0	0	0	0	6580	1711	59	5		5	GNB1L	22	19808925	Intron	SNP	T	TCGA-50-5072-01A-21D-1855-08		19808925	31495641	382	132845											
UPB1	51733	broad.mit.edu	37	chr22	24906619	24906619	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccatggcactcctgagaCtgtattcttttgcagtgact	10	10	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24906619	A	A	24906619	1	1	156	0	1	0	0	0	0	0	0	0	17128	580	20	3		3	UPB1	22	24906619	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	5097694	24906619	26397947	383	132846											
SEZ6L	23544	broad.mit.edu	37	chr22	26706748	26706748	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaggcaacaccatccgcatcGagttcacgtccgaccaggcc	9	16	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26706748	C	C	26706748	3	2	156	1	0	0	0	0	1	0	0	0	14256	1059	37	4	1653	4	SEZ6L	22	26706748	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	1800129	26706748	24597818	384	132847											
CHEK2	11200	broad.mit.edu	37	chr22	29090115	29090115	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggtccagagctaaagcaaCaattgggcaaatcacagtga	10	8	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29090115	G	G	29090115	1	3	156	0	1	0	0	0	0	0	0	0	3366	493	17	4		4	CHEK2	22	29090115	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	2383367	29090115	22214451	385	132848											
SLC5A4	6527	broad.mit.edu	37	chr22	32650213	32650213	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcatcgcctgagcagaaggGaagacaggtgagggtcaagc	16	8	1	4			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32650213	A	A	32650213	1	1	156	0	1	0	0	0	0	0	0	0	14781	1189	41	4		4	SLC5A4	22	32650213	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	3560098	32650213	18654353	386	132849											
MYH9	4627	broad.mit.edu	37	chr22	36684277	36684277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtgccgcccaccctcacCtgggccccgcccacccttac	9	23	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36684277	A	A	36684277	1	1	156	0	1	0	0	0	0	0	0	0	10136	696	24	2		2	MYH9	22	36684277	Intron	SNP	C	TCGA-50-5072-01A-21D-1855-08	4034064	36684277	14620289	387	132850											
IL2RB	3560	broad.mit.edu	37	chr22	37532381	37532381	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgggtgtctggggtgagcGtctccaggcagatccattcc	14	11	2	2	rs143330463	byFrequency;by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37532381	A	A	37532381	3	1	156	1	0	0	0	0	1	0	0	0	7757	1145	40	4	1081	4	IL2RB	22	37532381	Missense_Mutation	SNP	G	TCGA-50-5072-01A-21D-1855-08	848104	37532381	13772185	388	132851											
GTPBP1	9567	broad.mit.edu	37	chr22	39122392	39122392	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatccatccatcgcaagcgcAtgcctgtcaaggaggtgcgg	12	12	1	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39122392	T	T	39122392	3	4	156	1	0	0	0	0	1	0	0	0	6943	217	8	5	1378	5	GTPBP1	22	39122392	Missense_Mutation	SNP	A	TCGA-50-5072-01A-21D-1855-08	1590011	39122392	12182174	389	132852											
SEPT3	55964	broad.mit.edu	37	chr22	42392949	42392949	+	Frame_Shift_Del	DEL	C	-	-													ccttccacctgtgccagccaCcccctgccccactgctgaat							TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42392949	-	-	42392949	7	5	156	1	0	1	0	1	0	0	0	0	14178	507	18	0	1139	0	SEPT3	22	42392949	Frame_Shift_Del	DEL	C	TCGA-50-5072-01A-21D-1855-08	3270557	42392949	8911617	390	132853											
MLC1	23209	broad.mit.edu	37	chr22	50502513	50502513	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtgtcccaggatgcacCctgcagccttgcactgacct	11	15	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50502513	T	T	50502513	3	4	156	1	0	0	0	0	1	0	0	0	9705	623	22	4	132	4	MLC1	22	50502513	Missense_Mutation	SNP	C	TCGA-50-5072-01A-21D-1855-08	8109564	50502513	802053	391	132854											
MXRA5	25878	broad.mit.edu	37	chrX	3238683	3238683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaacttactaggaatgctGggtttggacatgtgcaatgg	13	5	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3238683	T	T	3238683	2	4	156	1	0	0	0	0	0	0	0	1	10097	1335	47	2		2	MXRA5	23	3238683	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08		3238683	152031877	392	132855											
USP11	8237	broad.mit.edu	37	chrX	47098928	47098928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtgcgtagtaagaaaGccttgtaggcccagcatggg	17	7	0	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47098928	T	T	47098928	1	4	156	0	1	0	0	0	0	0	0	0	17168	986	34	3		3	USP11	23	47098928	Intron	SNP	G	TCGA-50-5072-01A-21D-1855-08	43860245	47098928	108171632	393	132856											
COL4A5	1287	broad.mit.edu	37	chrX	107829751	107829751	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaactatgtgaaaatgatgAcattgtaatcatatgtagct	7	4	1	3			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107829751	T	T	107829751	1	4	156	0	1	0	0	0	0	0	0	0	3726	290	10	5		5	COL4A5	23	107829751	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	60730823	107829751	47440809	394	132857											
CT47B1	643311	broad.mit.edu	37	chrX	120008904	120008904	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcggccaggtcagctggCactgcaggctctgggaccga	14	13	3	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120008904	A	A	120008904	2	1	156	1	0	0	0	0	0	0	0	1	4023	697	25	3		3	CT47B1	23	120008904	Silent	SNP	C	TCGA-50-5072-01A-21D-1855-08	12179153	120008904	35261656	395	132858											
XPNPEP2	7512	broad.mit.edu	37	chrX	128885596	128885596	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaggaaggaaggaaggAaggaaggaaggaaggaagga	20	0	0	0			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128885596	T	T	128885596	1	4	156	0	1	0	0	0	0	0	0	0	17570	261	9	5		5	XPNPEP2	23	128885596	Intron	SNP	A	TCGA-50-5072-01A-21D-1855-08	8876692	128885596	26384964	396	132859											
FHL1	2273	broad.mit.edu	37	chrX	135290072	135290072	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggaggacttctactgcgtGacttgccatgagaccaagtt	13	9	1	2			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135290072	T	T	135290072	2	4	156	1	0	0	0	0	0	0	0	1	5935	1277	45	3		3	FHL1	23	135290072	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	6404476	135290072	19980488	397	132860											
MAGEA12	4111	broad.mit.edu	37	chrX	151900216	151900216	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaggcctgtcttgggcacGatctgattgtcgcccagcag	14	11	2	1			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151900216	T	T	151900216	2	4	156	1	0	0	0	0	0	0	0	1	9254	1048	37	3		3	MAGEA12	23	151900216	Silent	SNP	G	TCGA-50-5072-01A-21D-1855-08	16610144	151900216	3370344	398	132861											
GDAP2	54834	broad.mit.edu	37	chr1	118441740	118441740	+	Frame_Shift_Del	DEL	T	-	-													tcaggtaccacaggctccccTtctgcatttccaatatctgc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118441740	-	-	118441740	7	5	157	1	0	1	0	1	0	0	0	0	6372	1606	56	0	835	0	GDAP2	1	118441740	Frame_Shift_Del	DEL	T	TCGA-50-5930-01A-11D-1753-08		118441740	130808881	1	132862											
HRNR	388697	broad.mit.edu	37	chr1	152187133	152187133	+	Frame_Shift_Del	DEL	C	-	-													tgtcggccactgctggaagaCcaaccggagccagacccatg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152187133	-	-	152187133	7	5	157	1	0	1	0	1	0	0	0	0	7426	508	18	0	1584	0	HRNR	1	152187133	Frame_Shift_Del	DEL	C	TCGA-50-5930-01A-11D-1753-08	33745393	152187133	97063488	2	132863											
NPR1	4881	broad.mit.edu	37	chr1	153656286	153656288	+	In_Frame_Del	DEL	CTT	-	-													ctcggcattctgattgtctcCttcttcatatacaggtgagc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153656288	-	-	153656286	7	5	157	1	0	1	0	1	0	0	0	0	10689	668	24	0	1496	0	NPR1	1	153656286	In_Frame_Del	DEL	CTT	TCGA-50-5930-01A-11D-1753-08	1469153	153656286	95594335	3	132864											
HEATR1	55127	broad.mit.edu	37	chr1	236730222	236730223	+	Intron	INS	-	A	A													agtaggtgcaagtaatcttcINScacaaaacaagtttaggtga							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236730223	A	A	236730222	6	5	157	0	1	1	1	0	0	0	0	0	7094	870	30	0		0	HEATR1	1	236730222	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08	83073936	236730222	12520399	4	132865											
CPS1	1373	broad.mit.edu	37	chr2	211542649	211542650	+	Frame_Shift_Ins	INS	-	A	A													aagctgtgcagaaatctcgcINSaaggtggactccaagagtct							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211542650	A	A	211542649	7	5	157	1	0	1	1	0	0	0	0	0	3855	697	25	0	4615	0	CPS1	2	211542649	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08		211542649	31656724	5	132866											
PER2	8864	broad.mit.edu	37	chr2	239184549	239184549	+	Intron	DEL	C	-	-													ctggtcgctactgcaggattCaagaaagaggcagccaaatg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	239184549	-	-	239184549	6	5	157	0	1	1	0	1	0	0	0	0	11824	841	29	0		0	PER2	2	239184549	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08	27641900	239184549	4014824	6	132867											
CD80	941	broad.mit.edu	37	chr3	119248751	119248751	+	Frame_Shift_Del	DEL	G	-	-													ttaaggtaatggcccaggatGggagcaggttatcaggaaaa							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119248751	-	-	119248751	7	5	157	1	0	1	0	1	0	0	0	0	3068	1348	47	0	140	0	CD80	3	119248751	Frame_Shift_Del	DEL	G	TCGA-50-5930-01A-11D-1753-08		119248751	78773679	7	132868											
STXBP5L	9515	broad.mit.edu	37	chr3	121037484	121037484	+	Intron	DEL	A	-	-													aatgtgaaatttataattttAgtaattaggtataattccat							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121037484	-	-	121037484	6	5	157	0	1	1	0	1	0	0	0	0	15475	435	15	0		0	STXBP5L	3	121037484	Intron	DEL	A	TCGA-50-5930-01A-11D-1753-08	1788733	121037484	76984946	8	132869											
ZNF148	7707	broad.mit.edu	37	chr3	124951844	124951851	+	Frame_Shift_Del	DEL	AAGAATTT	-	-													ggtgacctctggtacttctgAagaatttattgatatgctag							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124951851	-	-	124951844	7	5	157	1	0	1	0	1	0	0	0	0	17860	246	9	0	662	0	ZNF148	3	124951844	Frame_Shift_Del	DEL	AAGAATTT	TCGA-50-5930-01A-11D-1753-08	3914360	124951844	73070586	9	132870											
TLR10	81793	broad.mit.edu	37	chr4	38775478	38775478	+	Frame_Shift_Del	DEL	C	-	-													accacaatggtgacaatcaaCagagctgtgttgcaagataa							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38775478	-	-	38775478	7	5	157	1	0	1	0	1	0	0	0	0	16073	465	17	0	705	0	TLR10	4	38775478	Frame_Shift_Del	DEL	C	TCGA-50-5930-01A-11D-1753-08		38775478	152378798	10	132871											
RXFP1	59350	broad.mit.edu	37	chr4	159568059	159568059	+	Frame_Shift_Del	DEL	G	-	-													agagtactcattgtcagcttGtaggatctttggccattctg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159568059	-	-	159568059	7	5	157	1	0	1	0	1	0	0	0	0	13870	1377	48	0	1524	0	RXFP1	4	159568059	Frame_Shift_Del	DEL	G	TCGA-50-5930-01A-11D-1753-08	120792581	159568059	31586217	11	132872											
BRD9	65980	broad.mit.edu	37	chr5	889153	889163	+	Frame_Shift_Del	DEL	ACTTGTATTCA	-	-													taccttaaattccgtaactgActtgtattcattagctacaa							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	889163	-	-	889153	7	5	157	1	0	1	0	1	0	0	0	0	1516	275	10	0	1252	0	BRD9	5	889153	Frame_Shift_Del	DEL	ACTTGTATTCA	TCGA-50-5930-01A-11D-1753-08		889153	180026107	12	132873											
SEMA5A	9037	broad.mit.edu	37	chr5	9066597	9066598	+	Frame_Shift_Ins	INS	-	A	A													tttcgattctctgtcttcccINSacttccagcaaattcggatc					rs144501622		TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9066598	A	A	9066597	7	5	157	1	0	1	1	0	0	0	0	0	14150	581	21	0	1017	0	SEMA5A	5	9066597	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08	8177444	9066597	171848663	13	132874											
IQGAP2	10788	broad.mit.edu	37	chr5	75893300	75893301	+	Frame_Shift_Ins	INS	-	A	A													catatcaatgctgtcattccINSggaaggtgaccccgagaata					rs141913830		TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75893301	A	A	75893300	7	5	157	1	0	1	1	0	0	0	0	0	7885	652	23	0	982	0	IQGAP2	5	75893300	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08	66826703	75893300	105021960	14	132875											
PJA2	9867	broad.mit.edu	37	chr5	108717407	108717408	+	Intron	INS	-	A	A													agattcttggtccattgctgINSaaaaaaaagttaaaaaatta							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108717408	A	A	108717407	6	5	157	0	1	1	1	0	0	0	0	0	12057	1305	45	0		0	PJA2	5	108717407	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08	32824107	108717407	72197853	15	132876											
RANBP17	64901	broad.mit.edu	37	chr5	170669914	170669914	+	Intron	DEL	G	-	-													tgagactatcatcctacaaaGggggaaaagatattgtgaac							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170669914	-	-	170669914	6	5	157	0	1	1	0	1	0	0	0	0	13135	1015	35	0		0	RANBP17	5	170669914	Intron	DEL	G	TCGA-50-5930-01A-11D-1753-08	61952507	170669914	10245346	16	132877											
FAM153A	285596	broad.mit.edu	37	chr5	177175832	177175832	+	Intron	DEL	G	-	-													gtagaaacttggcttccactGggacaccctcctgggtgatg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	177175832	-	-	177175832	6	5	157	0	1	1	0	1	0	0	0	0	5506	1363	47	0		0	FAM153A	5	177175832	Intron	DEL	G	TCGA-50-5930-01A-11D-1753-08	6505918	177175832	3739428	17	132878											
GCK	2645	broad.mit.edu	37	chr7	44187228	44187228	+	Intron	DEL	G	-	-													cggcccagggcctgggttgtGggggaggggggcatccttac							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44187228	-	-	44187228	6	5	157	0	1	1	0	1	0	0	0	0	6355	1363	47	0		0	GCK	7	44187228	Intron	DEL	G	TCGA-50-5930-01A-11D-1753-08		44187228	114951435	18	132879											
SEMA3D	223117	broad.mit.edu	37	chr7	84628646	84628646	+	3'UTR	DEL	C	-	-													attcagattattgtcttgtgCcttagcaaaactccatggga							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84628646	-	-	84628646	6	5	157	0	1	1	0	1	0	0	0	0	14140	754	26	0		0	SEMA3D	7	84628646	3'UTR	DEL	C	TCGA-50-5930-01A-11D-1753-08	40441418	84628646	74510017	19	132880											
MLL3	58508	broad.mit.edu	37	chr7	151860287	151860288	+	Frame_Shift_Ins	INS	-	T	T													ggttgcataaaatcacaaggINStaagtcggaactgtagaagg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151860288	T	T	151860287	7	5	157	1	0	1	1	0	0	0	0	0	9715	1261	44	0	4428	0	MLL3	7	151860287	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08	67231641	151860287	7278376	20	132881											
KLHL38	340359	broad.mit.edu	37	chr8	124663858	124663859	+	Frame_Shift_Ins	INS	-	A	A													tgcatgatgtcctctcctccINSaaagagatagagtctttggt							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124663859	A	A	124663858	7	5	157	1	0	1	1	0	0	0	0	0	8461	603	21	0	448	0	KLHL38	8	124663858	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08		124663858	21700164	21	132882											
FAM135B	51059	broad.mit.edu	37	chr8	139207465	139207466	+	Intron	INS	-	A	A													tgccttgcaaaactactgccINSattcattcagaccccagcgc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139207466	A	A	139207465	6	5	157	0	1	1	1	0	0	0	0	0	5495	609	21	0		0	FAM135B	8	139207465	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08	14543607	139207465	7156557	22	132883											
TET1	80312	broad.mit.edu	37	chr10	70404767	70404767	+	Frame_Shift_Del	DEL	A	-	-													aaaccgtaagaaatggcattAaacatgtacactgtttacca							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70404767	-	-	70404767	7	5	157	1	0	1	0	1	0	0	0	0	15891	363	13	0	2291	0	TET1	10	70404767	Frame_Shift_Del	DEL	A	TCGA-50-5930-01A-11D-1753-08		70404767	65129980	23	132884											
SH2D4B	387694	broad.mit.edu	37	chr10	82369177	82369177	+	Intron	DEL	C	-	-													ctccccactttctttctcttCagcaggacctgggagcgccc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82369177	-	-	82369177	6	5	157	0	1	1	0	1	0	0	0	0	14349	841	29	0		0	SH2D4B	10	82369177	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08	11964410	82369177	53165570	24	132885											
SEC23IP	11196	broad.mit.edu	37	chr10	121671596	121671596	+	Frame_Shift_Del	DEL	G	-	-													ctcctcagtgccagatgaatGgggcaccacgcaagatggac							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121671596	-	-	121671596	7	5	157	1	0	1	0	1	0	0	0	0	14106	1357	47	0	1254	0	SEC23IP	10	121671596	Frame_Shift_Del	DEL	G	TCGA-50-5930-01A-11D-1753-08	39302419	121671596	13863151	25	132886											
ANO3	63982	broad.mit.edu	37	chr11	26669355	26669355	+	Frame_Shift_Del	DEL	A	-	-													ttacatcccacgttttgtttAtgaatacaaatatggcccct							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26669355	-	-	26669355	7	5	157	1	0	1	0	1	0	0	0	0	698	449	16	0	2622	0	ANO3	11	26669355	Frame_Shift_Del	DEL	A	TCGA-50-5930-01A-11D-1753-08		26669355	108337161	26	132887											
OR4A5	81318	broad.mit.edu	37	chr11	51412109	51412110	+	Frame_Shift_Ins	INS	-	T	T													gtctataaatagctggcccaINStgcaaccttggaaggaaata							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51412110	T	T	51412109	7	5	157	1	0	1	1	0	0	0	0	0	11137	217	8	0	664	0	OR4A5	11	51412109	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08	24742754	51412109	83594407	27	132888											
OR4D6	219983	broad.mit.edu	37	chr11	59224758	59224758	+	Frame_Shift_Del	DEL	G	-	-													ttttcttccactttgctggtGgggcagatatttttttcctc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59224758	-	-	59224758	7	5	157	1	0	1	0	1	0	0	0	0	11152	1348	47	0	327	0	OR4D6	11	59224758	Frame_Shift_Del	DEL	G	TCGA-50-5930-01A-11D-1753-08	7812649	59224758	75781758	28	132889											
SLC22A6	9356	broad.mit.edu	37	chr11	62744466	62744466	+	Intron	DEL	C	-	-													gcctggacacctgctctctgCcccaaatacctactgctccc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62744466	-	-	62744466	6	5	157	0	1	1	0	1	0	0	0	0	14572	754	26	0		0	SLC22A6	11	62744466	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08	3519708	62744466	72262050	29	132890											
P4HA3	283208	broad.mit.edu	37	chr11	73979178	73979178	+	Intron	DEL	G	-	-													ccccttctcatgcccagaaaGgcaagacttaccccacttat							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73979178	-	-	73979178	6	5	157	0	1	1	0	1	0	0	0	0	11452	1015	35	0		0	P4HA3	11	73979178	Intron	DEL	G	TCGA-50-5930-01A-11D-1753-08	11234712	73979178	61027338	30	132891											
SLC37A2	219855	broad.mit.edu	37	chr11	124949013	124949013	+	Frame_Shift_Del	DEL	T	-	-													ctttctcttccccagtggggTttttggggagcggcttccgc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124949013	-	-	124949013	7	5	157	1	0	1	0	1	0	0	0	0	14712	1725	60	0	338	0	SLC37A2	11	124949013	Frame_Shift_Del	DEL	T	TCGA-50-5930-01A-11D-1753-08	50969835	124949013	10057503	31	132892											
IPO8	10526	broad.mit.edu	37	chr12	30818976	30818977	+	Intron	INS	-	A	A													tttcccctcaccaggagaggINSaaaaaaaaaatccttaaggt							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30818977	A	A	30818976	6	5	157	0	1	1	1	0	0	0	0	0	7868	1189	41	0		0	IPO8	12	30818976	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08		30818976	103032919	32	132893											
GPC6	10082	broad.mit.edu	37	chr13	95034650	95034650	+	Intron	DEL	C	-	-													gcagaatactcacttgctttCcttggtttcttgatcaggtc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95034650	-	-	95034650	6	5	157	0	1	1	0	1	0	0	0	0	6667	870	30	0		0	GPC6	13	95034650	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08		95034650	20135228	33	132894											
FGF14	2259	broad.mit.edu	37	chr13	102379118	102379118	+	Frame_Shift_Del	DEL	C	-	-													gtagattacataataattttCaaaaacagattctttaaact							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102379118	-	-	102379118	7	5	157	1	0	1	0	1	0	0	0	0	5900	835	29	0	300	0	FGF14	13	102379118	Frame_Shift_Del	DEL	C	TCGA-50-5930-01A-11D-1753-08	7344468	102379118	12790760	34	132895											
APEX1	328	broad.mit.edu	37	chr14	20925323	20925324	+	Frame_Shift_Ins	INS	-	T	T													cctggcttcccgaaagccccINSttgtgctgtgtggagacctc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20925324	T	T	20925323	7	5	157	1	0	1	1	0	0	0	0	0	771	681	24	0	627	0	APEX1	14	20925323	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08		20925323	86424217	35	132896											
SUPT16H	11198	broad.mit.edu	37	chr14	21837903	21837904	+	Intron	INS	-	T	T													aaaagaccctctcatctccaINStttacctcatctgcatcaac							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21837904	T	T	21837903	6	5	157	0	1	1	1	0	0	0	0	0	15514	232	8	0		0	SUPT16H	14	21837903	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08	912580	21837903	85511637	36	132897											
WDHD1	11169	broad.mit.edu	37	chr14	55477055	55477055	+	Frame_Shift_Del	DEL	C	-	-													agcagcaattttagtaccatCcccattaaagaccacatggt							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55477055	-	-	55477055	7	5	157	1	0	1	0	1	0	0	0	0	17398	855	30	0	3168	0	WDHD1	14	55477055	Frame_Shift_Del	DEL	C	TCGA-50-5930-01A-11D-1753-08	33639152	55477055	51872485	37	132898											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84651166	84651166	+	Frame_Shift_Del	DEL	C	-	-													ctatttgctgcccaacacatCcgtgattattaagtgccccg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84651166	-	-	84651166	7	5	157	1	0	1	0	1	0	0	0	0	276	855	30	0	2864	0	ADAMTSL3	15	84651166	Frame_Shift_Del	DEL	C	TCGA-50-5930-01A-11D-1753-08		84651166	17880226	38	132899											
IGF1R	3480	broad.mit.edu	37	chr15	99192755	99192762	+	5'UTR	DEL	TTTTTTTT	-	-													cctttttttcttttcttttcTtttttttttttttttttttt							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99192762	-	-	99192755	6	5	157	0	1	1	0	1	0	0	0	0	7641	1624	56	0		0	IGF1R	15	99192755	5'UTR	DEL	TTTTTTTT	TCGA-50-5930-01A-11D-1753-08	14541589	99192755	3338637	39	132900											
SEPT12	124404	broad.mit.edu	37	chr16	4835924	4835924	+	Intron	DEL	C	-	-													cagagtcgggagagactggaCccaggtgggatggggtgggg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4835924	-	-	4835924	6	5	157	0	1	1	0	1	0	0	0	0	14175	522	18	0		0	SEPT12	16	4835924	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08		4835924	85518829	40	132901											
ERN2	10595	broad.mit.edu	37	chr16	23721536	23721536	+	Frame_Shift_Del	DEL	C	-	-													tccccaagatgtacaggctgCcatctgctgggtcagagaga							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23721536	-	-	23721536	7	5	157	1	0	1	0	1	0	0	0	0	5280	739	26	0	2593	0	ERN2	16	23721536	Frame_Shift_Del	DEL	C	TCGA-50-5930-01A-11D-1753-08	18885612	23721536	66633217	41	132902											
AMFR	267	broad.mit.edu	37	chr16	56401457	56401457	+	Intron	DEL	C	-	-													ccgctggaagagaaacagtaCcaaaaacagtccagagtcac							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56401457	-	-	56401457	6	5	157	0	1	1	0	1	0	0	0	0	571	522	18	0		0	AMFR	16	56401457	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08	32679921	56401457	33953296	42	132903											
AARS	16	broad.mit.edu	37	chr16	70316698	70316698	+	Intron	DEL	A	-	-													ccccaaagaactaatcaaagAaaaaaaaatgaaggaaaatt							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70316698	-	-	70316698	6	5	157	0	1	1	0	1	0	0	0	0	19	261	9	0		0	AARS	16	70316698	Intron	DEL	A	TCGA-50-5930-01A-11D-1753-08	13915241	70316698	20038055	43	132904											
PKD1L2	114780	broad.mit.edu	37	chr16	81249875	81249876	+	Frame_Shift_Ins	INS	-	T	T													cgcacatgaaggcgaaggtcINStgggcgcagtccgaggtcac							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81249876	T	T	81249875	7	5	157	1	0	1	1	0	0	0	0	0	12060	912	32	0	7178	0	PKD1L2	16	81249875	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08	10933177	81249875	9104878	44	132905											
TSPAN10	83882	broad.mit.edu	37	chr17	79612387	79612388	+	Frame_Shift_Ins	INS	-	T	T													ggtggtcagcgcagtgagccINStggctggctacctgggcgcc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79612388	T	T	79612387	7	5	157	1	0	1	1	0	0	0	0	0	16759	680	24	0	412	0	TSPAN10	17	79612387	Frame_Shift_Ins	INS	-	TCGA-50-5930-01A-11D-1753-08		79612387	1582823	45	132906											
MKNK2	2872	broad.mit.edu	37	chr19	2039657	2039657	+	Frame_Shift_Del	DEL	G	-	-													actggggccgaggacagactGgccctttgccgccgctgcgc					rs143409655	byFrequency	TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2039657	-	-	2039657	7	5	157	1	0	1	0	1	0	0	0	0	9698	1335	47	0	143	0	MKNK2	19	2039657	Frame_Shift_Del	DEL	G	TCGA-50-5930-01A-11D-1753-08		2039657	57089326	46	132907											
SYMPK	8189	broad.mit.edu	37	chr19	46352163	46352164	+	Intron	INS	-	A	A													ggagaaaaaaggggcgaggtINScaaggtgtggtcttagagca							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46352164	A	A	46352163	6	5	157	0	1	1	1	0	0	0	0	0	15558	1682	58	0		0	SYMPK	19	46352163	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08	44312506	46352163	12776820	47	132908											
TRPM4	54795	broad.mit.edu	37	chr19	49671369	49671370	+	Intron	INS	-	T	T													cacaggtgaccgagggtgggINStgggggctgtctcctgggcc							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49671370	T	T	49671369	6	5	157	0	1	1	1	0	0	0	0	0	16713	1276	44	0		0	TRPM4	19	49671369	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08	3319206	49671369	9457614	48	132909											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56854616	56854616	+	Intron	DEL	C	-	-													tctggtgatgtccttggcaaCccccttcagtattcctctgt							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56854616	-	-	56854616	6	5	157	0	1	1	0	1	0	0	0	0	18367	522	18	0		0	ZSCAN5A	19	56854616	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08	7183247	56854616	2274367	49	132910											
ADSL	158	broad.mit.edu	37	chr22	40757211	40757211	+	Intron	DEL	C	-	-													atctccttcatcagcctagtCacagctcccagactctactg							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40757211	-	-	40757211	6	5	157	0	1	1	0	1	0	0	0	0	346	841	29	0		0	ADSL	22	40757211	Intron	DEL	C	TCGA-50-5930-01A-11D-1753-08		40757211	10547355	50	132911											
HUWE1	10075	broad.mit.edu	37	chrX	53561461	53561462	+	Intron	INS	-	C	C													ggaccatatgaggagggatgINSccagcagcagctcacctgaa							TCGA-50-5930-01A-11D-1753-08	TCGA-50-5930-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53561462	C	C	53561461	6	5	157	0	1	1	1	0	0	0	0	0	7531	1334	46	0		0	HUWE1	23	53561461	Intron	INS	-	TCGA-50-5930-01A-11D-1753-08		53561461	101709099	51	132912											
CPSF3L	54973	broad.mit.edu	37	chr1	1249403	1249403	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgtgtctgcacagcccacGcacgggccaggttgagtcca	12	16	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1249403	A	A	1249403	1	1	158	0	1	0	0	0	0	0	0	0	3859	1102	38	4		4	CPSF3L	1	1249403	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08		1249403	248001218	1	132913											
CAMTA1	23261	broad.mit.edu	37	chr1	7725216	7725216	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagcagagcggacgggTgttcatggtgaccgactact	15	10	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7725216	A	A	7725216	3	1	158	1	0	0	0	0	1	0	0	0	2639	1696	59	5	2643	5	CAMTA1	1	7725216	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	6475813	7725216	241525405	2	132914											
CROCC	9696	broad.mit.edu	37	chr1	17183687	17183687	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcccagctcccaaaaaattGactagaagggaagctggctg	12	10	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17183687	T	T	17183687	1	4	158	0	1	0	0	0	0	0	0	0	3925	1305	45	3		3	CROCC	1	17183687	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	9458471	17183687	232066934	3	132915											
CATSPER4	378807	broad.mit.edu	37	chr1	26527428	26527428	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccccttgcgggaggcccCctgtcgaacctctcagaaaa	10	15	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26527428	T	T	26527428	2	4	158	1	0	0	0	0	0	0	0	1	2716	610	22	4		4	CATSPER4	1	26527428	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	9343741	26527428	222723193	4	132916											
C1orf172	126695	broad.mit.edu	37	chr1	27278144	27278144	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctgtcagcttcttgaagAtgagcacatcaatttctcgg	9	10	5	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27278144	G	G	27278144	3	3	158	1	0	0	0	0	1	0	0	0	2033	333	12	5	480	5	C1orf172	1	27278144	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	750716	27278144	221972477	5	132917											
YARS	8565	broad.mit.edu	37	chr1	33252384	33252384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatggacaattaaattacaTcccaacatcattcatacttt	2	9	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33252384	C	C	33252384	1	2	158	0	1	0	0	0	0	0	0	0	17594	1450	50	5		5	YARS	1	33252384	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5974240	33252384	215998237	6	132918											
CSMD2	114784	broad.mit.edu	37	chr1	34276420	34276420	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatggggaaattgggggagGtgatgatgcccgaggggcct	20	5	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34276420	C	C	34276420	3	2	158	1	0	0	0	0	1	0	0	0	3979	1261	44	4	9453	4	CSMD2	1	34276420	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1024036	34276420	214974201	7	132919											
SFPQ	6421	broad.mit.edu	37	chr1	35652649	35652649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggttgctggtggaacgcCaggattagcttcataaccta	11	9	1	0	rs144271953	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35652649	A	A	35652649	3	1	158	1	0	0	0	0	1	0	0	0	14273	594	21	2	192	2	SFPQ	1	35652649	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1376229	35652649	213597972	8	132920											
CAP1	10487	broad.mit.edu	37	chr1	40535803	40535803	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcggtgtgtgctttgtgaTgagaatcctgggatctctct	13	7	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40535803	C	C	40535803	1	2	158	0	1	0	0	0	0	0	0	0	2645	1479	51	5		5	CAP1	1	40535803	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	4883154	40535803	208714818	9	132921											
SLC6A9	6536	broad.mit.edu	37	chr1	44468471	44468471	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacacacataacccaggtAgggggcagggtctttctggg	13	9	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44468471	G	G	44468471	1	3	158	0	1	0	0	0	0	0	0	0	14805	435	15	5		5	SLC6A9	1	44468471	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	3932668	44468471	204782150	10	132922											
MMACHC	25974	broad.mit.edu	37	chr1	45965897	45965897	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaatatggtcccgctacTggacccatttcctacctggg	10	13	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45965897	C	C	45965897	1	2	158	0	1	0	0	0	0	0	0	0	9734	1595	55	5		5	MMACHC	1	45965897	5'UTR	SNP	T	TCGA-50-5931-01A-11D-1753-08	1497426	45965897	203284724	11	132923											
TMEM69	51249	broad.mit.edu	37	chr1	46156846	46156846	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgggctaggtcagtagCagtgaaaaagacaaaaatcc	11	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46156846	T	T	46156846	1	4	158	0	1	0	0	0	0	0	0	0	16321	725	25	4		4	TMEM69	1	46156846	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	190949	46156846	203093775	12	132924											
FAF1	11124	broad.mit.edu	37	chr1	51048260	51048260	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaacctgtgggatgcacttTttaatcagaaaaggtcaaac	8	7	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51048260	A	A	51048260	1	1	158	0	1	0	0	0	0	0	0	0	5415	1856	64	5		5	FAF1	1	51048260	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	4891414	51048260	198202361	13	132925											
GPX7	2882	broad.mit.edu	37	chr1	53074127	53074127	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctcctccaccacctcatCccgcccacctgtgtggggct	7	21	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53074127	A	A	53074127	1	1	158	0	1	0	0	0	0	0	0	0	6811	870	30	3		3	GPX7	1	53074127	3'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	2025867	53074127	196176494	14	132926											
PODN	127435	broad.mit.edu	37	chr1	53544461	53544461	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcaccgcgacgccttcCgcaagctgcgcctgctgcgc	13	17	0	0	rs145236540		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53544461	T	T	53544461	3	4	158	1	0	0	0	0	1	0	0	0	12273	652	23	4	1453	4	PODN	1	53544461	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	470334	53544461	195706160	15	132927											
GLIS1	148979	broad.mit.edu	37	chr1	53995556	53995556	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctggcacaggtacggcttctCgcccgtgtggctcctcaggt	13	14	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53995556	G	G	53995556	3	3	158	1	0	0	0	0	1	0	0	0	6509	893	31	4	1025	4	GLIS1	1	53995556	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	451095	53995556	195255065	16	132928											
DAB1	1600	broad.mit.edu	37	chr1	57480495	57480495	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttgactccagaaacccCgcctccagacatgagttacg	7	13	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57480495	A	A	57480495	1	1	158	0	1	0	0	0	0	0	0	0	4250	667	23	1		1	DAB1	1	57480495	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	3484939	57480495	191770126	17	132929											
DOCK7	85440	broad.mit.edu	37	chr1	63005186	63005186	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatagtatttaaattatttGattactaattattcctaact	2	5	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63005186	A	A	63005186	1	1	158	0	1	0	0	0	0	0	0	0	4732	1305	45	4		4	DOCK7	1	63005186	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	5524691	63005186	186245435	18	132930											
LEPR	3953	broad.mit.edu	37	chr1	66038102	66038102	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagaatctattcaggaattAtaactataaggtccatcttt	5	6	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66038102	T	T	66038102	3	4	158	1	0	0	0	0	1	0	0	0	8800	449	16	5	474	5	LEPR	1	66038102	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	3032916	66038102	183212519	19	132931											
PDE4B	5142	broad.mit.edu	37	chr1	66713219	66713219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttccgctgggctggtaCttcacgccacctttcctggg	11	15	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66713219	A	A	66713219	3	1	158	1	0	0	0	0	1	0	0	0	11734	565	20	3	608	3	PDE4B	1	66713219	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	675117	66713219	182537402	20	132932											
RPE65	6121	broad.mit.edu	37	chr1	68905310	68905310	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacgatctctgacttgcttAttggatcttccttgtctgaa	7	10	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68905310	G	G	68905310	3	3	158	1	0	0	0	0	1	0	0	0	13656	449	16	5	974	5	RPE65	1	68905310	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	2192091	68905310	180345311	21	132933											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76877592	76877592	+	Intron	DEL	A	-	-													tacttcagagatatttccatAtttggtaattatacaatata							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76877592	-	-	76877592	6	5	158	0	1	1	0	1	0	0	0	0	15343	464	16	0		0	ST6GALNAC3	1	76877592	Intron	DEL	A	TCGA-50-5931-01A-11D-1753-08	7972282	76877592	172373029	22	132934											
PTGFR	5737	broad.mit.edu	37	chr1	79002383	79002383	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcacctagcttaataggaCagtaaatctgtgtggggcta	11	7	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79002383	A	A	79002383	1	1	158	0	1	0	0	0	0	0	0	0	12855	493	17	3		3	PTGFR	1	79002383	3'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	2124791	79002383	170248238	23	132935											
DDAH1	23576	broad.mit.edu	37	chr1	85786976	85786976	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcgaggggagggagggtggGggtgttgaatgaagcaattc	20	4	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85786976	C	C	85786976	1	2	158	0	1	0	0	0	0	0	0	0	4354	1247	43	4		4	DDAH1	1	85786976	3'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	6784593	85786976	163463645	24	132936											
ZNHIT6	54680	broad.mit.edu	37	chr1	86173255	86173255	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagtgtggtttccttcacTctagacatgaggactccaca	9	10	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86173255	C	C	86173255	1	2	158	0	1	0	0	0	0	0	0	0	18338	1566	54	5		5	ZNHIT6	1	86173255	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	386279	86173255	163077366	25	132937											
CLCA4	22802	broad.mit.edu	37	chr1	87040257	87040257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaacactgaatagtaatgCctggatgaacgacactgtca	8	8	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87040257	A	A	87040257	3	1	158	1	0	0	0	0	1	0	0	0	3490	739	26	3	1540	3	CLCA4	1	87040257	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	867002	87040257	162210364	26	132938											
HS2ST1	9653	broad.mit.edu	37	chr1	87512040	87512040	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcatcttttgggcaaagtActtaagaagtatctcctgac	8	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87512040	T	T	87512040	1	4	158	0	1	0	0	0	0	0	0	0	7429	406	14	5		5	HS2ST1	1	87512040	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	471783	87512040	161738581	27	132939											
MTF2	22823	broad.mit.edu	37	chr1	93602318	93602327	+	Frame_Shift_Del	DEL	AGAGCACTCC	-	-													gaagaggtcgtcttccaagaAgagcactccagactcagaac							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93602327	-	-	93602318	7	5	158	1	0	1	0	1	0	0	0	0	10017	64	3	0	1574	0	MTF2	1	93602318	Frame_Shift_Del	DEL	AGAGCACTCC	TCGA-50-5931-01A-11D-1753-08	6090278	93602318	155648303	28	132940											
COL11A1	1301	broad.mit.edu	37	chr1	103345531	103345531	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctcttttatgctacaaaGaattaaatcactgcagacag	5	9	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103345531	C	C	103345531	1	2	158	0	1	0	0	0	0	0	0	0	3699	957	33	4		4	COL11A1	1	103345531	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	9743213	103345531	145905090	29	132941											
COL11A1	1301	broad.mit.edu	37	chr1	103548481	103548481	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgttgtttttgatattccctCtggagaattgtgaaaatcta	8	6	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103548481	G	G	103548481	3	3	158	1	0	0	0	0	1	0	0	0	3699	922	32	4	5687	4	COL11A1	1	103548481	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	202950	103548481	145702140	30	132942											
GSTM4	2948	broad.mit.edu	37	chr1	110201418	110201418	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtctgagggtggtgacAgctgttttctgcctcaggag	15	7	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110201418	T	T	110201418	1	4	158	0	1	0	0	0	0	0	0	0	6906	203	7	5		5	GSTM4	1	110201418	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	6652937	110201418	139049203	31	132943											
IGSF3	3321	broad.mit.edu	37	chr1	117122485	117122485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggggaccactgtgtccaCctgcagggaagcatctgggg	15	10	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117122485	A	A	117122485	3	1	158	1	0	0	0	0	1	0	0	0	7671	507	18	3	729	3	IGSF3	1	117122485	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	6921067	117122485	132128136	32	132944											
WARS2	10352	broad.mit.edu	37	chr1	119575683	119575683	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttaattggggcaaacttctCaatcacagcatctgccacgg	8	12	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119575683	A	A	119575683	4	1	158	1	0	0	0	0	0	1	0	0	17377	835	29	3	152	3	WARS2	1	119575683	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2453198	119575683	129674938	33	132945											
BCL9	607	broad.mit.edu	37	chr1	147092256	147092256	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgctcagcagaagatggtGccactgccatttggtgagca	12	11	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147092256	C	C	147092256	2	2	158	1	0	0	0	0	0	0	0	1	1386	1306	46	4		4	BCL9	1	147092256	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	27516573	147092256	102158365	34	132946											
SF3B4	10262	broad.mit.edu	37	chr1	149898282	149898282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttacctggtggaggaagcCcagaccccaatgatgatacc	10	12	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149898282	A	A	149898282	3	1	158	1	0	0	0	0	1	0	0	0	14266	623	22	2	598	2	SF3B4	1	149898282	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2806026	149898282	99352339	35	132947											
PSMD4	5710	broad.mit.edu	37	chr1	151234801	151234801	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggggacagaggaggagggGactcagtaggtgggtggttg	23	3	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151234801	A	A	151234801	1	1	158	0	1	0	0	0	0	0	0	0	12806	1189	41	4		4	PSMD4	1	151234801	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1336519	151234801	98015820	36	132948											
TUFT1	7286	broad.mit.edu	37	chr1	151537169	151537169	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctcatttaccaattacccAgtgtgtgctaaatctagcat	6	10	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151537169	T	T	151537169	1	4	158	0	1	0	0	0	0	0	0	0	16898	203	7	5		5	TUFT1	1	151537169	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	302368	151537169	97713452	37	132949											
NPR1	4881	broad.mit.edu	37	chr1	153660565	153660565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcggggtgagcagccccCcttccggccctccctggccc	12	20	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153660565	A	A	153660565	3	1	158	1	0	0	0	0	1	0	0	0	10689	623	22	2	2343	2	NPR1	1	153660565	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2123396	153660565	95590056	38	132950											
UBAP2L	9898	broad.mit.edu	37	chr1	154224114	154224114	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctccaagtagcctgtAtaccagcacggccaggtaga	11	13	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154224114	G	G	154224114	3	3	158	1	0	0	0	0	1	0	0	0	16964	449	16	5	1699	5	UBAP2L	1	154224114	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	563549	154224114	95026507	39	132951											
UBE2Q1	55585	broad.mit.edu	37	chr1	154524207	154524207	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaagctcagacaatcccCgcccaggccggcctggccaa	10	16	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154524207	G	G	154524207	1	3	158	0	1	0	0	0	0	0	0	0	16995	667	23	4		4	UBE2Q1	1	154524207	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	300093	154524207	94726414	40	132952											
ASH1L	55870	broad.mit.edu	37	chr1	155451984	155451984	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacttggaaggaggacagGtagcaatcagctgtgccaac	13	8	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155451984	A	A	155451984	3	1	158	1	0	0	0	0	1	0	0	0	1045	1261	44	4	8321	4	ASH1L	1	155451984	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	927777	155451984	93798637	41	132953											
SYT11	23208	broad.mit.edu	37	chr1	155850855	155850855	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttattgtgcaatcactAaagaacacatgggatggcca	10	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155850855	T	T	155850855	1	4	158	0	1	0	0	0	0	0	0	0	15586	377	13	5		5	SYT11	1	155850855	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	398871	155850855	93399766	42	132954											
ARHGEF11	9826	broad.mit.edu	37	chr1	156909773	156909773	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaggatcgttgtactgCcccactgaccccaaggtggt	11	13	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156909773	T	T	156909773	1	4	158	0	1	0	0	0	0	0	0	0	898	754	26	4		4	ARHGEF11	1	156909773	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1058918	156909773	92340848	43	132955											
FCRL3	115352	broad.mit.edu	37	chr1	157667638	157667638	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgatgagtgtttttgttgtCtttcccctgacatctcagaa	8	8	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157667638	G	G	157667638	3	3	158	1	0	0	0	0	1	0	0	0	5853	913	32	4	1878	4	FCRL3	1	157667638	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	757865	157667638	91582983	44	132956											
FCRL2	79368	broad.mit.edu	37	chr1	157718563	157718563	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattgggaatggctgggcctCtggtgttggggtgtctacac	16	7	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157718563	A	A	157718563	1	1	158	0	1	0	0	0	0	0	0	0	5852	928	32	3		3	FCRL2	1	157718563	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	50925	157718563	91532058	45	132957											
CD1A	909	broad.mit.edu	37	chr1	158227309	158227309	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaggaaacgctggtgagttCtttgcatgtgtctttcctac	10	9	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158227309	G	G	158227309	1	3	158	0	1	0	0	0	0	0	0	0	3004	928	32	4		4	CD1A	1	158227309	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	508746	158227309	91023312	46	132958											
CD1C	911	broad.mit.edu	37	chr1	158263216	158263216	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taccacctccaacttattcaGggtttctcccattcctgttc	4	15	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158263216	C	C	158263216	1	2	158	0	1	0	0	0	0	0	0	0	3006	1015	35	4		4	CD1C	1	158263216	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	35907	158263216	90987405	47	132959											
OR10K2	391107	broad.mit.edu	37	chr1	158390049	158390049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatagccaggaccaatgtaCagagcatgaagatgacaatc	11	8	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158390049	A	A	158390049	3	1	158	1	0	0	0	0	1	0	0	0	11008	478	17	3	332	3	OR10K2	1	158390049	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	126833	158390049	90860572	48	132960											
OR6K2	81448	broad.mit.edu	37	chr1	158670076	158670076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagggctgcatatggccaGgtagtggtcaaaggccataa	14	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158670076	T	T	158670076	3	4	158	1	0	0	0	0	1	0	0	0	11296	991	35	2	611	2	OR6K2	1	158670076	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	280027	158670076	90580545	49	132961											
OR6K2	81448	broad.mit.edu	37	chr1	158670505	158670505	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttctaggaggcatctacTattggataaaggaatacact	9	8	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158670505	A	A	158670505	1	1	158	0	1	0	0	0	0	0	0	0	11296	1537	53	5		5	OR6K2	1	158670505	5'Flank	SNP	T	TCGA-50-5931-01A-11D-1753-08	429	158670505	90580116	50	132962											
OR6N2	81442	broad.mit.edu	37	chr1	158747472	158747472	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaacattggattgagatGactgctgaatccatgccaaa	9	7	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158747472	A	A	158747472	1	1	158	0	1	0	0	0	0	0	0	0	11301	1305	45	4		4	OR6N2	1	158747472	5'Flank	SNP	G	TCGA-50-5931-01A-11D-1753-08	76967	158747472	90503149	51	132963											
CD48	962	broad.mit.edu	37	chr1	160651121	160651121	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcacactgttctggagctCctttgggaagggccttttgt	12	9	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160651121	A	A	160651121	4	1	158	1	0	0	0	0	0	1	0	0	3050	864	30	3	216	3	CD48	1	160651121	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1903649	160651121	88599500	52	132964											
USP21	27005	broad.mit.edu	37	chr1	161132420	161132420	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagcctttgcagatgtgaTtggtgccctctggcaccctg	11	12	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161132420	C	C	161132420	3	2	158	1	0	0	0	0	1	0	0	0	17179	1493	52	5	811	5	USP21	1	161132420	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	481299	161132420	88118201	53	132965											
C1orf114	57821	broad.mit.edu	37	chr1	169391574	169391574	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacaagatatttttcagTcaaaattgagattcttcatt	4	5	4	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169391574	C	C	169391574	1	2	158	0	1	0	0	0	0	0	0	0	2007	1682	58	5		5	C1orf114	1	169391574	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	8259154	169391574	79859047	54	132966											
SLC9A11	284525	broad.mit.edu	37	chr1	173478744	173478744	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcaaaatactgataggcaGtactgagagcaagctttagc	9	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173478744	C	C	173478744	3	2	158	1	0	0	0	0	1	0	0	0	14825	1029	36	4	392	4	SLC9A11	1	173478744	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	4087170	173478744	75771877	55	132967											
C1orf125	126859	broad.mit.edu	37	chr1	179437862	179437862	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatataattcactttttcaAagtgtacaattctgtggtgt	6	5	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179437862	T	T	179437862	1	4	158	0	1	0	0	0	0	0	0	0	2013	29	1	5		5	C1orf125	1	179437862	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	5959118	179437862	69812759	56	132968											
ASPM	259266	broad.mit.edu	37	chr1	197055911	197055911	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaacagtgacacaaatttaTggactatatttaattgctta	6	5	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197055911	A	A	197055911	1	1	158	0	1	0	0	0	0	0	0	0	1060	1479	51	5		5	ASPM	1	197055911	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	17618049	197055911	52194710	57	132969											
CRB1	23418	broad.mit.edu	37	chr1	197403914	197403914	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatattaccagagaactcaCcaatatcacatttggtttca	5	9	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197403914	G	G	197403914	3	3	158	1	0	0	0	0	1	0	0	0	3880	507	18	4	2955	4	CRB1	1	197403914	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	348003	197403914	51846707	58	132970											
CNTN2	6900	broad.mit.edu	37	chr1	205035456	205035456	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtgtgtgttcactgcaTcctctgctgccctgtcttgg	12	12	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205035456	A	A	205035456	1	1	158	0	1	0	0	0	0	0	0	0	3673	1450	50	5		5	CNTN2	1	205035456	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	7631542	205035456	44215165	59	132971											
FCAMR	83953	broad.mit.edu	37	chr1	207143407	207143407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcagaggcaagatcccaaCctccaggagaaagcatcatt	8	11	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207143407	A	A	207143407	1	1	158	0	1	0	0	0	0	0	0	0	5829	522	18	3		3	FCAMR	1	207143407	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2107951	207143407	42107214	60	132972											
USH2A	7399	broad.mit.edu	37	chr1	216219863	216219863	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataataccatttgccttttTgggtgggttccaggagagca	11	7	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216219863	C	C	216219863	3	2	158	1	0	0	0	0	1	0	0	0	17162	1821	63	5	9537	5	USH2A	1	216219863	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	9076456	216219863	33030758	61	132973											
USH2A	7399	broad.mit.edu	37	chr1	216462806	216462806	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taattcattaaaatcagctgCataattcaaaattaaagact	3	6	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216462806	T	T	216462806	1	4	158	0	1	0	0	0	0	0	0	0	17162	725	25	4		4	USH2A	1	216462806	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	242943	216462806	32787815	62	132974											
SLC30A10	55532	broad.mit.edu	37	chr1	220100417	220100417	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcttttttcatcatgtctTctggctcattctgggtgttg	8	9	7	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220100417	C	C	220100417	3	2	158	1	0	0	0	0	1	0	0	0	14668	1783	62	5	798	5	SLC30A10	1	220100417	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	3637611	220100417	29150204	63	132975											
MARK1	4139	broad.mit.edu	37	chr1	220791515	220791515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttatgcattgaagtaccatActgggcttctaaatttgata	8	6	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220791515	G	G	220791515	1	3	158	0	1	0	0	0	0	0	0	0	9404	406	14	5		5	MARK1	1	220791515	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	691098	220791515	28459106	64	132976											
FAM177B	400823	broad.mit.edu	37	chr1	222923317	222923317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggcccaggcagctgaggttCctaatgaaaagtgtcacttg	12	9	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222923317	A	A	222923317	3	1	158	1	0	0	0	0	1	0	0	0	5547	855	30	3	408	3	FAM177B	1	222923317	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2131802	222923317	26327304	65	132977											
CDC42BPA	8476	broad.mit.edu	37	chr1	227259820	227259820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttatgtcaacaattctccCacctatgcaatgaattgatt	5	10	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227259820	A	A	227259820	1	1	158	0	1	0	0	0	0	0	0	0	3102	609	21	2		2	CDC42BPA	1	227259820	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	4336503	227259820	21990801	66	132978											
ABCB10	23456	broad.mit.edu	37	chr1	229665906	229665906	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaagtgggagcagagctcGggagagtccctcggtgctac	15	10	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229665906	T	T	229665906	1	4	158	0	1	0	0	0	0	0	0	0	41	1131	39	1		1	ABCB10	1	229665906	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2406086	229665906	19584715	67	132979											
PGBD5	79605	broad.mit.edu	37	chr1	230472732	230472732	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttccctcaaggaagggcctCatcacctggcatcctgtggt	11	13	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230472732	A	A	230472732	1	1	158	0	1	0	0	0	0	0	0	0	11879	841	29	3		3	PGBD5	1	230472732	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	806826	230472732	18777889	68	132980											
RYR2	6262	broad.mit.edu	37	chr1	237538083	237538083	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttgatgttggcttgcaaGaggacaccacaggtaagcat	11	8	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237538083	T	T	237538083	4	4	158	1	0	0	0	0	0	1	0	0	13880	943	33	3	477	3	RYR2	1	237538083	Nonsense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	7065351	237538083	11712538	69	132981											
RYR2	6262	broad.mit.edu	37	chr1	237580397	237580397	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgttcatgcacgttccctTtggagactagagacgctaag	10	10	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237580397	A	A	237580397	2	1	158	1	0	0	0	0	0	0	0	1	13880	1828	64	5		5	RYR2	1	237580397	Silent	SNP	T	TCGA-50-5931-01A-11D-1753-08	42314	237580397	11670224	70	132982											
RYR2	6262	broad.mit.edu	37	chr1	237947531	237947531	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtccaaaagacagttcatAtttgacgtggtcaacgaagg	11	7	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237947531	G	G	237947531	3	3	158	1	0	0	0	0	1	0	0	0	13880	439	16	5	12877	5	RYR2	1	237947531	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	367134	237947531	11303090	71	132983											
RGS7	6000	broad.mit.edu	37	chr1	240966101	240966101	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggtcttggagtatgttcActtaccattagtccaatacc	9	9	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240966101	C	C	240966101	1	2	158	0	1	0	0	0	0	0	0	0	13419	174	6	5		5	RGS7	1	240966101	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	3018570	240966101	8284520	72	132984											
SDCCAG8	10806	broad.mit.edu	37	chr1	243542029	243542029	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctctctacctaaggaaataGagaaattgagaatagaactg	8	6	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243542029	C	C	243542029	3	2	158	1	0	0	0	0	1	0	0	0	14072	943	33	4	1530	4	SDCCAG8	1	243542029	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	2575928	243542029	5708592	73	132985											
SDCCAG8	10806	broad.mit.edu	37	chr1	243579122	243579123	+	Missense_Mutation	DNP	GA	TG	TG													agcaaatggaggcccagcatGacaaaactggtaggtggtag							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	243579123	TG	TG	243579122	3	4	158	1	0	0	0	0	1	0	0	0	14072	1290	45	3	1789	3	SDCCAG8	1	243579122	Missense_Mutation	DNP	GA	TCGA-50-5931-01A-11D-1753-08	37093	243579122	5671499	74	132986											
OR2L2	26246	broad.mit.edu	37	chr1	248201826	248201826	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggtttatgattttctgtAtggaaacaagtctatctcct	8	6	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248201826	G	G	248201826	3	3	158	1	0	0	0	0	1	0	0	0	11101	449	16	5	259	5	OR2L2	1	248201826	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	4622704	248201826	1048795	75	132987											
OR2M2	391194	broad.mit.edu	37	chr1	248343519	248343519	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgctcatctgcaccaccGtacccaagatggccttcaac	6	16	4	1	rs143926960		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343519	A	A	248343519	3	1	158	1	0	0	0	0	1	0	0	0	11104	1145	40	4	234	4	OR2M2	1	248343519	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	141693	248343519	907102	76	132988											
OR14C36	127066	broad.mit.edu	37	chr1	248512680	248512680	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatgattgttgtctctgctCtgggggtaggtggcggctgt	16	7	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248512680	A	A	248512680	3	1	158	1	0	0	0	0	1	0	0	0	11040	912	32	3	606	3	OR14C36	1	248512680	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	169161	248512680	737941	77	132989											
OR2T2	401992	broad.mit.edu	37	chr1	248616203	248616203	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgcaatagtcttctccatCtttgtggtggctataacagc	8	9	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248616203	A	A	248616203	2	1	158	1	0	0	0	0	0	0	0	1	11114	903	32	3		3	OR2T2	1	248616203	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	103523	248616203	634418	78	132990											
ALLC	55821	broad.mit.edu	37	chr2	3726203	3726203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaaagttaaaaacgcaGgctgtggcaaagccagtgtc	11	9	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3726203	T	T	3726203	1	4	158	0	1	0	0	0	0	0	0	0	534	1015	35	2		2	ALLC	2	3726203	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08		3726203	239473170	79	132991											
DDX1	1653	broad.mit.edu	37	chr2	15735456	15735456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgattttctaaattatGgaaagtttcctttttttaac	5	4	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15735456	T	T	15735456	1	4	158	0	1	0	0	0	0	0	0	0	4374	1363	47	2		2	DDX1	2	15735456	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	12009253	15735456	227463917	80	132992											
NCOA1	8648	broad.mit.edu	37	chr2	24951088	24951088	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaacagtgaattttctaaGaccaaatttgcatctatata	4	8	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24951088	A	A	24951088	1	1	158	0	1	0	0	0	0	0	0	0	10323	957	33	4		4	NCOA1	2	24951088	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	9215632	24951088	218248285	81	132993											
DNMT3A	1788	broad.mit.edu	37	chr2	25470989	25470989	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctcaggcgtggtagccaCagtgggggatgcggggtcag	21	8	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25470989	T	T	25470989	3	4	158	1	0	0	0	0	1	0	0	0	4716	478	17	4	2034	4	DNMT3A	2	25470989	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	519901	25470989	217728384	82	132994											
GCKR	2646	broad.mit.edu	37	chr2	27726407	27726407	+	Nonsense_Mutation	SNP	C	A	A													ccccattgaagactggagttCaacattccgacaagtagcag							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27726407	A	A	27726407	4	1	158	1	0	0	0	0	0	1	0	0	6356	838	29	3	705	3	GCKR	2	27726407	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2255418	27726407	215472966	83	132995	571	2									
GCKR	2646	broad.mit.edu	37	chr2	27726409	27726409	+	Missense_Mutation	SNP	A	T	T													ccattgaagactggagttcaAcattccgacaagtagcagag							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27726409	T	T	27726409	3	4	158	1	0	0	0	0	1	0	0	0	6356	43	2	5	707	5	GCKR	2	27726409	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	2	27726409	215472964	84	132996	571	2									
SLC30A6	55676	broad.mit.edu	37	chr2	32417361	32417361	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctagagagactggtttgtGaattgaaagaattgtgatga	12	2	1	7			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32417361	T	T	32417361	1	4	158	0	1	0	0	0	0	0	0	0	14673	1305	45	3		3	SLC30A6	2	32417361	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4690952	32417361	210782012	85	132997											
BIRC6	57448	broad.mit.edu	37	chr2	32822858	32822858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgaagatgggaaattGggatttaaagtaaattacca	11	2	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32822858	T	T	32822858	3	4	158	1	0	0	0	0	1	0	0	0	1444	1339	47	2	13927	2	BIRC6	2	32822858	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	405497	32822858	210376515	86	132998											
MSH2	4436	broad.mit.edu	37	chr2	47635523	47635524	+	Intron	INS	-	T	T													atctcaaatctgtaatgtacINStttttttttttttaaggagc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47635524	T	T	47635523	6	5	158	0	1	1	1	0	0	0	0	0	9964	580	20	0		0	MSH2	2	47635523	Intron	INS	-	TCGA-50-5931-01A-11D-1753-08	14812665	47635523	195563850	87	132999											
MSH2	4436	broad.mit.edu	37	chr2	47643558	47643558	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcatggataagaacagaAtagaggagaggtatgttatt	11	4	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47643558	G	G	47643558	3	3	158	1	0	0	0	0	1	0	0	0	9964	101	4	5	1088	5	MSH2	2	47643558	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	8035	47643558	195555815	88	133000											
MTIF2	4528	broad.mit.edu	37	chr2	55464680	55464680	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaatccaaattcatgccTagaaaaaagtctgggtttct	6	8	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55464680	C	C	55464680	1	2	158	0	1	0	0	0	0	0	0	0	10028	1537	53	5		5	MTIF2	2	55464680	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	7821122	55464680	187734693	89	133001											
MEIS1	4211	broad.mit.edu	37	chr2	66739408	66739408	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaaatatcatgagggcgtgGctgttccagcatctaacagt	10	9	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66739408	C	C	66739408	3	2	158	1	0	0	0	0	1	0	0	0	9560	1212	42	4	900	4	MEIS1	2	66739408	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	11274728	66739408	176459965	90	133002											
ANTXR1	84168	broad.mit.edu	37	chr2	69272011	69272011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtagccctgagatttgtGctctggtgccagccttgacc	12	11	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69272011	T	T	69272011	1	4	158	0	1	0	0	0	0	0	0	0	711	1334	46	3		3	ANTXR1	2	69272011	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2532603	69272011	173927362	91	133003											
REG3G	130120	broad.mit.edu	37	chr2	79255397	79255397	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctatgtctgcaagttcaagGactagggcaggtgggaagtc	14	8	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79255397	C	C	79255397	3	2	158	1	0	0	0	0	1	0	0	0	13321	1174	41	4	541	4	REG3G	2	79255397	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	9983386	79255397	163943976	92	133004											
REEP1	65055	broad.mit.edu	37	chr2	86509394	86509394	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagagacaaaaataaataCgatttttcatttatcttatt	4	4	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86509394	T	T	86509394	1	4	158	0	1	0	0	0	0	0	0	0	13312	551	19	4		4	REEP1	2	86509394	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	7253997	86509394	156689979	93	133005											
RMND5A	64795	broad.mit.edu	37	chr2	87105988	87105988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggattacatagcttccttaCcatttcaggtaaacaagtgt	7	8	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87105988	A	A	87105988	1	1	158	0	1	0	0	0	0	0	0	0	13508	522	18	3		3	RMND5A	2	87105988	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	596594	87105988	156093385	94	133006											
RMND5A	64795	broad.mit.edu	37	chr2	87110370	87110370	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agattgcattttgagatagtAggtttctagttgctcgtgta	11	4	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87110370	T	T	87110370	1	4	158	0	1	0	0	0	0	0	0	0	13508	435	15	5		5	RMND5A	2	87110370	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	4382	87110370	156089003	95	133007											
ASTL	431705	broad.mit.edu	37	chr2	96789882	96789882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccaggccctgcaggaaCgggctggcctcccgcactgg	13	18	0	0	rs138508296	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96789882	A	A	96789882	3	1	158	1	0	0	0	0	1	0	0	0	1067	536	19	3	295	3	ASTL	2	96789882	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	9679512	96789882	146409491	96	133008											
CHST10	9486	broad.mit.edu	37	chr2	101014379	101014379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacacacaccatttagaaCaatcagcactttcttccact	2	16	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101014379	A	A	101014379	3	1	158	1	0	0	0	0	1	0	0	0	3429	478	17	3	664	3	CHST10	2	101014379	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	4224497	101014379	142184994	97	133009											
IL18RAP	8807	broad.mit.edu	37	chr2	103061712	103061712	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcttggaaaaagtcactcaGcgtgatcttcgcaggaagtt	10	8	4	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103061712	C	C	103061712	3	2	158	1	0	0	0	0	1	0	0	0	7718	962	34	4	1010	4	IL18RAP	2	103061712	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	2047333	103061712	140137661	98	133010											
FOXD4L1	200350	broad.mit.edu	37	chr2	114258219	114258219	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactccaccttgcgcggcccAtactgggcgtgtgcatctga	11	15	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114258219	T	T	114258219	1	4	158	0	1	0	0	0	0	0	0	0	6058	232	8	5		5	FOXD4L1	2	114258219	3'UTR	SNP	A	TCGA-50-5931-01A-11D-1753-08	11196507	114258219	128941154	99	133011											
TFCP2L1	29842	broad.mit.edu	37	chr2	121999986	121999986	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtatttctccttctcttgGgcagttcttttctccatctt	6	11	5	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121999986	T	T	121999986	2	4	158	1	0	0	0	0	0	0	0	1	15919	1219	43	2		2	TFCP2L1	2	121999986	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	7741767	121999986	121199387	100	133012											
CACNB4	785	broad.mit.edu	37	chr2	152711655	152711655	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagcaagacgttctccttTgtccactaacaaaaaaccac	4	13	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152711655	C	C	152711655	1	2	158	0	1	0	0	0	0	0	0	0	2581	1827	63	5		5	CACNB4	2	152711655	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	30711669	152711655	90487718	101	133013											
FAP	2191	broad.mit.edu	37	chr2	163066355	163066355	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttataccttgctactttttCtatgaaaataagtagtgcca	5	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163066355	A	A	163066355	1	1	158	0	1	0	0	0	0	0	0	0	5730	928	32	3		3	FAP	2	163066355	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	10354700	163066355	80133018	102	133014											
CSRNP3	80034	broad.mit.edu	37	chr2	166535183	166535183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtttgtaatagttccatGgtgctaatctgtgttcttcc	9	7	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166535183	T	T	166535183	1	4	158	0	1	0	0	0	0	0	0	0	3999	1363	47	2		2	CSRNP3	2	166535183	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	3468828	166535183	76664190	103	133015											
SCN1A	6323	broad.mit.edu	37	chr2	166903268	166903268	+	Intron	DEL	G	-	-													aaggtcagtgccatgagacaGggcagctttacctgagctgc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	166903268	-	-	166903268	6	5	158	0	1	1	0	1	0	0	0	0	14027	1015	35	0		0	SCN1A	2	166903268	Intron	DEL	G	TCGA-50-5931-01A-11D-1753-08	368085	166903268	76296105	104	133016											
RAPGEF4	11069	broad.mit.edu	37	chr2	173659691	173659691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atataattaaaatgaggcctGttgattcactttgaggtaaa	8	4	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173659691	T	T	173659691	1	4	158	0	1	0	0	0	0	0	0	0	13154	1392	48	3		3	RAPGEF4	2	173659691	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	6756423	173659691	69539682	105	133017											
FKBP7	51661	broad.mit.edu	37	chr2	179342049	179342049	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccatcattcccatataatCactctttctaaaacccttaa	0	13	4	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179342049	A	A	179342049	1	1	158	0	1	0	0	0	0	0	0	0	5970	841	29	3		3	FKBP7	2	179342049	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	5682358	179342049	63857324	106	133018											
TTN	7273	broad.mit.edu	37	chr2	179393173	179393173	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctaagacaaaggaaaaagAaaagaaatgttgaagttctt	8	3	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179393173	G	G	179393173	1	3	158	0	1	0	0	0	0	0	0	0	16861	261	9	5		5	TTN	2	179393173	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	51124	179393173	63806200	107	133019											
TTN	7273	broad.mit.edu	37	chr2	179403333	179403333	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcccagtctcattctcagCaaaaaccctgaattcatact	4	14	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179403333	T	T	179403333	3	4	158	1	0	0	0	0	1	0	0	0	16861	710	25	4	8792	4	TTN	2	179403333	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	10160	179403333	63796040	108	133020											
TTN	7273	broad.mit.edu	37	chr2	179437609	179437610	+	Missense_Mutation	DNP	GG	TT	TT													gcattctgtcttcagcctttGgagttccaggaacaagggca							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179437610	TT	TT	179437609	3	4	158	1	0	0	0	0	1	0	0	0	16861	1348	47	2	34877	2	TTN	2	179437609	Missense_Mutation	DNP	GG	TCGA-50-5931-01A-11D-1753-08	34276	179437609	63761764	109	133021											
TTN	7273	broad.mit.edu	37	chr2	179553413	179553413	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgattatataccttcgtgccGcgtgacttccactctttgag	8	12	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179553413	T	T	179553413	2	4	158	1	0	0	0	0	0	0	0	1	16861	1086	38	3		3	TTN	2	179553413	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	115804	179553413	63645960	110	133022											
TTN	7273	broad.mit.edu	37	chr2	179593427	179593427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgagttctggtgttccaGccacaacacattccaaggtc	8	12	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179593427	T	T	179593427	3	4	158	1	0	0	0	0	1	0	0	0	16861	971	34	3	85491	3	TTN	2	179593427	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	40014	179593427	63605946	111	133023											
MSTN	2660	broad.mit.edu	37	chr2	190926980	190926980	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggtaatgattgtttccgTtgtagcgtgataatcgtcat	10	6	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190926980	A	A	190926980	3	1	158	1	0	0	0	0	1	0	0	0	9987	1725	60	5	796	5	MSTN	2	190926980	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	11333553	190926980	52272393	112	133024											
STAT1	6772	broad.mit.edu	37	chr2	191859968	191859968	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaagacacaagacacagaTgtctctatgagaaacagtcc	10	9	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191859968	A	A	191859968	1	1	158	0	1	0	0	0	0	0	0	0	15382	1479	51	5		5	STAT1	2	191859968	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	932988	191859968	51339405	113	133025											
MARS2	92935	broad.mit.edu	37	chr2	198570098	198570098	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacacgtgctgtcagaacGccgcctcctccgcttgcggc	10	18	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198570098	A	A	198570098	1	1	158	0	1	0	0	0	0	0	0	0	9409	1102	38	4		4	MARS2	2	198570098	5'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	6710130	198570098	44629275	114	133026											
CASP10	843	broad.mit.edu	37	chr2	202052610	202052611	+	Intron	INS	-	T	T													agggtttttagggagatttaINSttttttatgggagacagtat							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202052611	T	T	202052610	6	5	158	0	1	1	1	0	0	0	0	0	2695	464	16	0		0	CASP10	2	202052610	Intron	INS	-	TCGA-50-5931-01A-11D-1753-08	3482512	202052610	41146763	115	133027											
CDK15	65061	broad.mit.edu	37	chr2	202698742	202698742	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtgaacaatgatgcttTtgtgtgcacttgtttaagcg	12	6	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202698742	C	C	202698742	1	2	158	0	1	0	0	0	0	0	0	0	3161	1856	64	5		5	CDK15	2	202698742	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	646132	202698742	40500631	116	133028											
ADAM23	8745	broad.mit.edu	37	chr2	207482345	207482345	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcctactcagcaaggcccCatctgaatcagctgcgctgg	10	14	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207482345	A	A	207482345	2	1	158	1	0	0	0	0	0	0	0	1	245	581	21	2		2	ADAM23	2	207482345	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	4783603	207482345	35717028	117	133029											
PIKFYVE	200576	broad.mit.edu	37	chr2	209182591	209182591	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttaattgttccattagAtcccaggtggaaagaagttt	8	6	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209182591	T	T	209182591	3	4	158	1	0	0	0	0	1	0	0	0	12019	347	12	5	2077	5	PIKFYVE	2	209182591	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	1700246	209182591	34016782	118	133030											
FN1	2335	broad.mit.edu	37	chr2	216263921	216263921	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccctgtttccactacatGggaaccacaaggacagctca	8	14	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216263921	T	T	216263921	1	4	158	0	1	0	0	0	0	0	0	0	6020	1363	47	2		2	FN1	2	216263921	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	7081330	216263921	26935452	119	133031											
FN1	2335	broad.mit.edu	37	chr2	216296710	216296710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgaagatacaacgaaaatGttaggagagggcagaacaga	13	4	0	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216296710	A	A	216296710	1	1	158	0	1	0	0	0	0	0	0	0	6020	1392	48	4		4	FN1	2	216296710	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	32789	216296710	26902663	120	133032											
TRIP12	9320	broad.mit.edu	37	chr2	230678748	230678748	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagtctgccaaaccaccCtaaaatatagaaaactgtta	5	10	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230678748	A	A	230678748	5	1	158	1	0	0	0	0	0	0	1	0	16681	695	24	2	4418	2	TRIP12	2	230678748	Splice_Site	SNP	C	TCGA-50-5931-01A-11D-1753-08	14382038	230678748	12520625	121	133033											
NMUR1	10316	broad.mit.edu	37	chr2	232392962	232392962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagcctctcccgccgcagtCgcagcccaatgagcaggtag	12	16	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232392962	A	A	232392962	3	1	158	1	0	0	0	0	1	0	0	0	10601	884	31	3	518	3	NMUR1	2	232392962	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1714214	232392962	10806411	122	133034											
NGEF	25791	broad.mit.edu	37	chr2	233839290	233839290	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcactgatgactccagtTggatgtaagggaacagccgt	12	9	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233839290	C	C	233839290	1	2	158	0	1	0	0	0	0	0	0	0	10489	1827	63	5		5	NGEF	2	233839290	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	1446328	233839290	9360083	123	133035											
COL6A3	1293	broad.mit.edu	37	chr2	238271887	238271887	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtataaagacataaaaAaaactcacaagctgctccgc	6	10	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238271887	G	G	238271887	1	3	158	0	1	0	0	0	0	0	0	0	3733	29	1	5		5	COL6A3	2	238271887	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	4432597	238271887	4927486	124	133036											
SCN10A	6336	broad.mit.edu	37	chr3	38835224	38835224	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagacattcctactagtaGctcttacccggtgtgtgctg	10	11	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835224	A	A	38835224	1	1	158	0	1	0	0	0	0	0	0	0	14025	986	34	4		4	SCN10A	3	38835224	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08		38835224	159187206	125	133037											
TGM4	7047	broad.mit.edu	37	chr3	44935024	44935024	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attggcaagcctgctcctgtCccagggcagaatataacctc	9	13	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44935024	A	A	44935024	1	1	158	0	1	0	0	0	0	0	0	0	15955	870	30	3		3	TGM4	3	44935024	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	6099800	44935024	153087406	126	133038											
PTH1R	5745	broad.mit.edu	37	chr3	46944143	46944143	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgcactatgagatgctcTtcaactccttccaggtgcgc	9	12	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46944143	C	C	46944143	3	2	158	1	0	0	0	0	1	0	0	0	12864	1609	56	5	1385	5	PTH1R	3	46944143	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	2009119	46944143	151078287	127	133039											
GNAT1	2779	broad.mit.edu	37	chr3	50230772	50230772	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctacggcaacacgttgcAgtccatcctggccatcgtac	8	15	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50230772	G	G	50230772	3	3	158	1	0	0	0	0	1	0	0	0	6575	188	7	5	234	5	GNAT1	3	50230772	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	3286629	50230772	147791658	128	133040											
FLNB	2317	broad.mit.edu	37	chr3	58111327	58111327	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtctccatgtagtggaggtGacatatgatgacgtgcctat	13	7	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58111327	C	C	58111327	2	2	158	1	0	0	0	0	0	0	0	1	5992	1277	45	4		4	FLNB	3	58111327	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	7880555	58111327	139911103	129	133041											
FRMD4B	23150	broad.mit.edu	37	chr3	69265515	69265515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatcctagaagatgaaaaAgcatgagaaccaagacctag	8	8	0	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69265515	G	G	69265515	1	3	158	0	1	0	0	0	0	0	0	0	6112	87	3	5		5	FRMD4B	3	69265515	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	11154188	69265515	128756915	130	133042											
ROBO1	6091	broad.mit.edu	37	chr3	79639115	79639115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagacaatgtgttatctgGggagattaaaaaaatattat	9	3	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79639115	T	T	79639115	1	4	158	0	1	0	0	0	0	0	0	0	13624	1247	43	2		2	ROBO1	3	79639115	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	10373600	79639115	118383315	131	133043											
CADM2	253559	broad.mit.edu	37	chr3	86063643	86063643	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatattcaaatgaaactcCctggaaaataccacagtgtt	6	8	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86063643	T	T	86063643	1	4	158	0	1	0	0	0	0	0	0	0	2593	638	22	4		4	CADM2	3	86063643	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	6424528	86063643	111958787	132	133044											
POU1F1	5449	broad.mit.edu	37	chr3	87311146	87311146	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcaaacctcctgctttaGcattaatcctacttattgaa	3	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87311146	A	A	87311146	1	1	158	0	1	0	0	0	0	0	0	0	12365	986	34	4		4	POU1F1	3	87311146	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1247503	87311146	110711284	133	133045											
CRYBG3	131544	broad.mit.edu	37	chr3	97605504	97605504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attccagaaatagagcttttCccacaatctgacccagcctg	6	13	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97605504	A	A	97605504	3	1	158	1	0	0	0	0	1	0	0	0	3945	854	30	3	1356	3	CRYBG3	3	97605504	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	10294358	97605504	100416926	134	133046											
GABRR3	200959	broad.mit.edu	37	chr3	97753563	97753563	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaggtgatttatgatgaTgcatgaatgctatctctaga	10	5	1	6			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97753563	C	C	97753563	1	2	158	0	1	0	0	0	0	0	0	0	6238	1479	51	5		5	GABRR3	3	97753563	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	148059	97753563	100268867	135	133047											
SENP7	57337	broad.mit.edu	37	chr3	101176101	101176101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caattcagtttgcctcattcTtggaagcctcatcaaaattc	5	11	5	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101176101	A	A	101176101	1	1	158	0	1	0	0	0	0	0	0	0	14164	1624	56	5		5	SENP7	3	101176101	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	3422538	101176101	96846329	136	133048											
CD47	961	broad.mit.edu	37	chr3	107766175	107766175	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaacacataatcactattCgtgtctattttctatccatt	3	9	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107766175	T	T	107766175	1	4	158	0	1	0	0	0	0	0	0	0	3049	899	31	4		4	CD47	3	107766175	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	6590074	107766175	90256255	137	133049											
HHLA2	11148	broad.mit.edu	37	chr3	108081176	108081176	+	Intron	DEL	T	-	-													ttcacagactttgtttctccTttttttttttagaaccgagc					rs78277135		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108081176	-	-	108081176	6	5	158	0	1	1	0	1	0	0	0	0	7162	1624	56	0		0	HHLA2	3	108081176	Intron	DEL	T	TCGA-50-5931-01A-11D-1753-08	315001	108081176	89941254	138	133050											
MYH15	22989	broad.mit.edu	37	chr3	108127310	108127310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcagtctcaaaccaatgaTaccaggcacaacagattctt	6	12	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108127310	A	A	108127310	1	1	158	0	1	0	0	0	0	0	0	0	10128	1421	49	5		5	MYH15	3	108127310	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	46134	108127310	89895120	139	133051											
TRAT1	50852	broad.mit.edu	37	chr3	108549696	108549696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggagtcactggaaaacctAtggaagcagacaattttatg	10	6	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108549696	G	G	108549696	1	3	158	0	1	0	0	0	0	0	0	0	16590	464	16	5		5	TRAT1	3	108549696	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	422386	108549696	89472734	140	133052											
MORC1	27136	broad.mit.edu	37	chr3	108788662	108788662	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaacaactacatctctttGagaagaaataacatcagact	4	10	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108788662	A	A	108788662	1	1	158	0	1	0	0	0	0	0	0	0	9795	1305	45	4		4	MORC1	3	108788662	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	238966	108788662	89233768	141	133053											
TAGLN3	29114	broad.mit.edu	37	chr3	111719426	111719426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagcagcattaggaatgGggtcctctgggtctttgggg	17	6	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111719426	T	T	111719426	1	4	158	0	1	0	0	0	0	0	0	0	15659	1247	43	2		2	TAGLN3	3	111719426	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2930764	111719426	86303004	142	133054											
WDR52	55779	broad.mit.edu	37	chr3	113118861	113118861	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagagcctatagaaagacaGttttaaaagaaaaaaaatta	6	4	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113118861	A	A	113118861	1	1	158	0	1	0	0	0	0	0	0	0	17431	1044	36	4		4	WDR52	3	113118861	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1399435	113118861	84903569	143	133055											
GAP43	2596	broad.mit.edu	37	chr3	115395236	115395236	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcctcagaggagaaggccgGctcagctgagacagaaagtg	14	9	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115395236	C	C	115395236	3	2	158	1	0	0	0	0	1	0	0	0	6297	1203	42	4	555	4	GAP43	3	115395236	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	2276375	115395236	82627194	144	133056											
LSAMP	4045	broad.mit.edu	37	chr3	115805416	115805416	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacgcacctgacagagcagAgtaacaatattagtgcctta	8	10	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115805416	T	T	115805416	1	4	158	0	1	0	0	0	0	0	0	0	9135	319	11	5		5	LSAMP	3	115805416	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	410180	115805416	82217014	145	133057											
POLQ	10721	broad.mit.edu	37	chr3	121208549	121208549	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtaaacgggtcttcacaaaGactaggattagacagagtct	11	7	3	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121208549	C	C	121208549	3	2	158	1	0	0	0	0	1	0	0	0	12303	942	33	4	4603	4	POLQ	3	121208549	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	5403133	121208549	76813881	146	133058											
GOLGB1	2804	broad.mit.edu	37	chr3	121400812	121400812	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagtcagacaccacaacaTgaaaccagcacctaacagtc	6	13	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121400812	G	G	121400812	1	3	158	0	1	0	0	0	0	0	0	0	6629	1479	51	5		5	GOLGB1	3	121400812	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	192263	121400812	76621618	147	133059											
SLC15A2	6565	broad.mit.edu	37	chr3	121640968	121640968	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtttgtgcaaaagttatTgtggtttttgccattgaaag	11	3	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121640968	C	C	121640968	1	2	158	0	1	0	0	0	0	0	0	0	14512	1827	63	5		5	SLC15A2	3	121640968	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	240156	121640968	76381462	148	133060											
CCDC14	64770	broad.mit.edu	37	chr3	123663717	123663717	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtaactgagcattctcaCttcttaatggttgcatggcc	8	10	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123663717	G	G	123663717	3	3	158	1	0	0	0	0	1	0	0	0	2799	565	20	4	1415	4	CCDC14	3	123663717	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2022749	123663717	74358713	149	133061											
KALRN	8997	broad.mit.edu	37	chr3	124438335	124438335	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagccatctcccagcccctaTggtttcacatagacgtgcag	8	14	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124438335	C	C	124438335	1	2	158	0	1	0	0	0	0	0	0	0	8045	1479	51	5		5	KALRN	3	124438335	3'UTR	SNP	T	TCGA-50-5931-01A-11D-1753-08	774618	124438335	73584095	150	133062											
HEG1	57493	broad.mit.edu	37	chr3	124746194	124746194	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaggacgggctccaagcCgaagtggtggcctcttggct	15	10	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124746194	A	A	124746194	2	1	158	1	0	0	0	0	0	0	0	1	7111	639	23	1		1	HEG1	3	124746194	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	307859	124746194	73276236	151	133063											
PIK3R4	30849	broad.mit.edu	37	chr3	130452634	130452634	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatcttggagccaaatgaAgaatcagttccaaagcagct	8	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130452634	C	C	130452634	3	2	158	1	0	0	0	0	1	0	0	0	12016	72	3	5	2936	5	PIK3R4	3	130452634	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	5706440	130452634	67569796	152	133064											
ATP2C1	27032	broad.mit.edu	37	chr3	130735084	130735084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgacagaagatgtgagctGtgtctaagtccagtcttgtg	12	7	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130735084	T	T	130735084	3	4	158	1	0	0	0	0	1	0	0	0	1147	1377	48	3	2959	3	ATP2C1	3	130735084	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	282450	130735084	67287346	153	133065											
NEK11	79858	broad.mit.edu	37	chr3	130748792	130748792	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtcttagctgattaggaAcatggagcaggccaggtatg	14	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130748792	G	G	130748792	1	3	158	0	1	0	0	0	0	0	0	0	10418	58	2	5		5	NEK11	3	130748792	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	13708	130748792	67273638	154	133066											
TF	7018	broad.mit.edu	37	chr3	133481012	133481012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcaggagactatgtttccCttgggaaagtagagccaact	12	8	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133481012	A	A	133481012	1	1	158	0	1	0	0	0	0	0	0	0	15908	696	24	2		2	TF	3	133481012	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2732220	133481012	64541418	155	133067											
TXNDC6	347736	broad.mit.edu	37	chr3	138025330	138025330	+	Intron	DEL	A	-	-													ctctctgatgaaactaagccAaaaaatggtgctgtcagatg							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138025330	-	-	138025330	6	5	158	0	1	1	0	1	0	0	0	0	16926	145	5	0		0	TXNDC6	3	138025330	Intron	DEL	A	TCGA-50-5931-01A-11D-1753-08	4544318	138025330	59997100	156	133068											
PRR23A	729627	broad.mit.edu	37	chr3	138724422	138724423	+	Missense_Mutation	DNP	GG	TT	TT													agggaggtagaggttggagaGgtgagctggggacaggctcc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	138724423	TT	TT	138724422	3	4	158	1	0	0	0	0	1	0	0	0	12700	1000	35	2	115	2	PRR23A	3	138724422	Missense_Mutation	DNP	GG	TCGA-50-5931-01A-11D-1753-08	699092	138724422	59298008	157	133069											
SLC9A9	285195	broad.mit.edu	37	chr3	143214238	143214238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgtgaacagtgccaggCccatgtaacagaagatgacg	13	9	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143214238	A	A	143214238	3	1	158	1	0	0	0	0	1	0	0	0	14835	739	26	3	823	3	SLC9A9	3	143214238	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	4489816	143214238	54808192	158	133070											
SLC9A9	285195	broad.mit.edu	37	chr3	143223078	143223078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgaccaggtgcccaataCagccaaattcatttactccg	7	12	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143223078	A	A	143223078	1	1	158	0	1	0	0	0	0	0	0	0	14835	493	17	3		3	SLC9A9	3	143223078	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	8840	143223078	54799352	159	133071											
ZIC4	84107	broad.mit.edu	37	chr3	147108869	147108869	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagcgcccgtgcaccttcaTgtgcttacgcagcgagctgg	13	14	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147108869	C	C	147108869	3	2	158	1	0	0	0	0	1	0	0	0	17807	1464	51	5	159	5	ZIC4	3	147108869	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	3885791	147108869	50913561	160	133072											
ZIC4	84107	broad.mit.edu	37	chr3	147114295	147114295	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgcatgagaacgggtggCgtgggctgcgcgctcttccc	17	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147114295	G	G	147114295	1	3	158	0	1	0	0	0	0	0	0	0	17807	783	27	4		4	ZIC4	3	147114295	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	5426	147114295	50908135	161	133073											
IFT80	57560	broad.mit.edu	37	chr3	159998646	159998646	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctattagctttaatatgTaagaattaaaaatagatctt	6	3	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159998646	C	C	159998646	1	2	158	0	1	0	0	0	0	0	0	0	7634	1653	57	5		5	IFT80	3	159998646	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	12884351	159998646	38023784	162	133074											
BCHE	590	broad.mit.edu	37	chr3	165491179	165491180	+	Frame_Shift_Del	DEL	CA	-	-													aaatctattaattagagaccCacacaactttctttcttgct							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165491180	-	-	165491179	7	5	158	1	0	1	0	1	0	0	0	0	1363	581	21	0	12	0	BCHE	3	165491179	Frame_Shift_Del	DEL	CA	TCGA-50-5931-01A-11D-1753-08	5492533	165491179	32531251	163	133075											
SERPINI2	5276	broad.mit.edu	37	chr3	167183295	167183295	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttctcagaagagccttcatCattggaattttgacagttga	9	7	3	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167183295	T	T	167183295	3	4	158	1	0	0	0	0	1	0	0	0	14232	826	29	4	596	4	SERPINI2	3	167183295	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1692116	167183295	30839135	164	133076											
SEC62	7095	broad.mit.edu	37	chr3	169710594	169710594	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtgaggaaaagtcagacAgtgagaaaaaggaagatgag	14	3	1	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169710594	C	C	169710594	3	2	158	1	0	0	0	0	1	0	0	0	14117	188	7	5	973	5	SEC62	3	169710594	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	2527299	169710594	28311836	165	133077											
NLGN1	22871	broad.mit.edu	37	chr3	173993224	173993224	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgaccccttaagaatcActgtttttggatctggtgct	11	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173993224	T	T	173993224	3	4	158	1	0	0	0	0	1	0	0	0	10556	159	6	5	776	5	NLGN1	3	173993224	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	4282630	173993224	24029206	166	133078											
NDUFB5	4711	broad.mit.edu	37	chr3	179322663	179322663	+	Frame_Shift_Del	DEL	C	-	-													gcggtggcagctctgtctggCcggccccttggcactcgcct					rs2271840		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179322663	-	-	179322663	7	5	158	1	0	1	0	1	0	0	0	0	10379	726	26	0	62	0	NDUFB5	3	179322663	Frame_Shift_Del	DEL	C	TCGA-50-5931-01A-11D-1753-08	5329439	179322663	18699767	167	133079											
CCDC39	339829	broad.mit.edu	37	chr3	180377426	180377426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggttttgcaaacatcaCcttgaaaattaagaaataaa	6	5	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180377426	A	A	180377426	1	1	158	0	1	0	0	0	0	0	0	0	2838	522	18	3		3	CCDC39	3	180377426	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1054763	180377426	17645004	168	133080											
CCDC39	339829	broad.mit.edu	37	chr3	180381558	180381558	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caatagtttaattatgctaaGgtttcctattatagctgtaa	6	5	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180381558	C	C	180381558	1	2	158	0	1	0	0	0	0	0	0	0	2838	1015	35	4		4	CCDC39	3	180381558	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4132	180381558	17640872	169	133081											
ABCF3	55324	broad.mit.edu	37	chr3	183907286	183907286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcggcctccaagataccTgggggcctgagaactgactg	14	11	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183907286	C	C	183907286	1	2	158	0	1	0	0	0	0	0	0	0	67	1595	55	5		5	ABCF3	3	183907286	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	3525728	183907286	14115144	170	133082											
EPHB3	2049	broad.mit.edu	37	chr3	184297425	184297425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtagagatgagaagctgaGgcgggctgggtacaggagtg	19	5	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184297425	T	T	184297425	1	4	158	0	1	0	0	0	0	0	0	0	5218	1015	35	2		2	EPHB3	3	184297425	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	390139	184297425	13725005	171	133083											
DGKG	1608	broad.mit.edu	37	chr3	186015996	186015996	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtacgccctcatgaacagcTtgaagacatcatagctaatc	8	11	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186015996	A	A	186015996	3	1	158	1	0	0	0	0	1	0	0	0	4509	1609	56	5	2296	5	DGKG	3	186015996	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	1718571	186015996	12006434	172	133084											
AHSG	197	broad.mit.edu	37	chr3	186338396	186338396	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgagctcacagccccaaCcagaaggtgccaatgaagca	10	14	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186338396	G	G	186338396	3	3	158	1	0	0	0	0	1	0	0	0	420	507	18	4	807	4	AHSG	3	186338396	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	322400	186338396	11684034	173	133085											
PYDC2	152138	broad.mit.edu	37	chr3	191179085	191179085	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctacagaccgtcccccagaCagaggtagacaaggctaatg	11	12	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191179085	G	G	191179085	3	3	158	1	0	0	0	0	1	0	0	0	12967	478	17	4	136	4	PYDC2	3	191179085	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	4840689	191179085	6843345	174	133086											
ZNF732	654254	broad.mit.edu	37	chr4	290078	290078	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacacagtaatgttctctAaagtattctatagctctgca	5	9	4	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	290078	T	T	290078	1	4	158	0	1	0	0	0	0	0	0	0	18252	377	13	5		5	ZNF732	4	290078	5'Flank	SNP	A	TCGA-50-5931-01A-11D-1753-08		290078	190864198	175	133087											
PIGG	54872	broad.mit.edu	37	chr4	502491	502491	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgagctcataggaaaaaAaaatctaattcattgagaaa	6	5	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	502491	G	G	502491	1	3	158	0	1	0	0	0	0	0	0	0	11983	29	1	5		5	PIGG	4	502491	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	212413	502491	190651785	176	133088											
RNF212	285498	broad.mit.edu	37	chr4	1073534	1073534	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacttacctctaacaacgtCagttgaaatacacacatgac	6	11	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1073534	T	T	1073534	1	4	158	0	1	0	0	0	0	0	0	0	13587	841	29	4		4	RNF212	4	1073534	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	571043	1073534	190080742	177	133089											
FAM193A	8603	broad.mit.edu	37	chr4	2674026	2674026	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatggacatgtgcctttgcAcactgttccacacctgccac	7	16	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2674026	C	C	2674026	3	2	158	1	0	0	0	0	1	0	0	0	5571	159	6	5	1419	5	FAM193A	4	2674026	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	1600492	2674026	188480250	178	133090											
EVC	2121	broad.mit.edu	37	chr4	5754652	5754652	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaggagaccaggtgccgGctggctgccatctcccacgg	15	14	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5754652	T	T	5754652	2	4	158	1	0	0	0	0	0	0	0	1	5327	1190	42	3		3	EVC	4	5754652	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	3080626	5754652	185399624	179	133091											
CRMP1	1400	broad.mit.edu	37	chr4	5837732	5837732	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccacggcaatccgccctttCcttgggtacaggttaaagat	9	13	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5837732	T	T	5837732	2	4	158	1	0	0	0	0	0	0	0	1	3922	854	30	4		4	CRMP1	4	5837732	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	83080	5837732	185316544	180	133092											
GBA3	57733	broad.mit.edu	37	chr4	22749429	22749429	+	Frame_Shift_Del	DEL	A	-	-													catcgatggtgattatcctgAagttgtcaagtctcagattg							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22749429	-	-	22749429	7	5	158	1	0	1	0	1	0	0	0	0	6330	246	9	0	807	0	GBA3	4	22749429	Frame_Shift_Del	DEL	A	TCGA-50-5931-01A-11D-1753-08	16911697	22749429	168404847	181	133093											
TBC1D19	55296	broad.mit.edu	37	chr4	26744202	26744202	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaactcttttatcatctaCgagaaattggggctcaaccg	7	12	4	1	rs141345574		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26744202	T	T	26744202	4	4	158	1	0	0	0	0	0	1	0	0	15726	528	19	4	1370	4	TBC1D19	4	26744202	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	3994773	26744202	164410074	182	133094											
ATP10D	57205	broad.mit.edu	37	chr4	47565847	47565847	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattggaacatttgagatttGatgtatgcaaggattaaaaa	9	3	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47565847	T	T	47565847	1	4	158	0	1	0	0	0	0	0	0	0	1122	1305	45	3		3	ATP10D	4	47565847	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	20821645	47565847	143588429	183	133095											
SRD5A3	79644	broad.mit.edu	37	chr4	56218482	56218482	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcttttctttctttttagGttttaatttatccttttctg	3	7	4	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56218482	A	A	56218482	1	1	158	0	1	0	0	0	0	0	0	0	15258	1276	44	4		4	SRD5A3	4	56218482	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	8652635	56218482	134935794	184	133096											
KIAA1211	57482	broad.mit.edu	37	chr4	57181643	57181643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaagccccgccaggagtctCccagcagcgcgtccgcactc	10	19	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57181643	A	A	57181643	3	1	158	1	0	0	0	0	1	0	0	0	8285	855	30	3	1993	3	KIAA1211	4	57181643	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	963161	57181643	133972633	185	133097											
EPHA5	2044	broad.mit.edu	37	chr4	66439761	66439761	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaacacaccagaaatttgtCattgccacctcaaccaaaat	4	12	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66439761	T	T	66439761	1	4	158	0	1	0	0	0	0	0	0	0	5212	841	29	4		4	EPHA5	4	66439761	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	9258118	66439761	124714515	186	133098											
HTN3	3347	broad.mit.edu	37	chr4	70897889	70897889	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgactatttattctcctaGaataattgatagttatctct	4	7	3	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70897889	C	C	70897889	1	2	158	0	1	0	0	0	0	0	0	0	7505	957	33	4		4	HTN3	4	70897889	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4458128	70897889	120256387	187	133099											
CXCL6	6372	broad.mit.edu	37	chr4	74702948	74702948	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaacgggaagcaagttTgtctggacccggaagcccct	13	10	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74702948	G	G	74702948	3	3	158	1	0	0	0	0	1	0	0	0	4121	1812	63	5	281	5	CXCL6	4	74702948	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	3805059	74702948	116451328	188	133100											
LIN54	132660	broad.mit.edu	37	chr4	83852072	83852072	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtatttgggaagtactatAaaaagattaaaatactgact	7	3	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83852072	G	G	83852072	1	3	158	0	1	0	0	0	0	0	0	0	8882	377	13	5		5	LIN54	4	83852072	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	9149124	83852072	107302204	189	133101											
WDFY3	23001	broad.mit.edu	37	chr4	85731005	85731005	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagtcatgcttagtataCaccctttaattcagaggaca	7	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85731005	T	T	85731005	1	4	158	0	1	0	0	0	0	0	0	0	17397	478	17	4		4	WDFY3	4	85731005	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1878933	85731005	105423271	190	133102											
HSD17B13	345275	broad.mit.edu	37	chr4	88239557	88239557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgcagtgacgcctagttttCggcactcagctgcagtttcc	11	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88239557	T	T	88239557	3	4	158	1	0	0	0	0	1	0	0	0	7449	884	31	4	684	4	HSD17B13	4	88239557	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2508552	88239557	102914719	191	133103											
PDHA2	5161	broad.mit.edu	37	chr4	96761509	96761509	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaggatgatgctgactgttCgccgcatggaattgaaggca	13	8	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761509	A	A	96761509	3	1	158	1	0	0	0	0	1	0	0	0	11759	884	31	3	210	3	PDHA2	4	96761509	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	8521952	96761509	94392767	192	133104											
ADH1A	124	broad.mit.edu	37	chr4	100207958	100207958	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcctcattcaggctgggAaatcttaggatggtgaacca	11	8	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100207958	T	T	100207958	1	4	158	0	1	0	0	0	0	0	0	0	307	261	9	5		5	ADH1A	4	100207958	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	3446449	100207958	90946318	193	133105											
ANK2	287	broad.mit.edu	37	chr4	114153505	114153505	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatagtctccattactttgtCtaaaatatgctaggaatgtt	6	6	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114153505	G	G	114153505	1	3	158	0	1	0	0	0	0	0	0	0	621	928	32	4		4	ANK2	4	114153505	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	13945547	114153505	77000771	194	133106											
ANK2	287	broad.mit.edu	37	chr4	114280096	114280096	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accaaagatacttacatcccGattgccagttaagagcagaa	7	10	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114280096	A	A	114280096	3	1	158	1	0	0	0	0	1	0	0	0	621	1058	37	4	10537	4	ANK2	4	114280096	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	126591	114280096	76874180	195	133107											
FABP2	2169	broad.mit.edu	37	chr4	120240643	120240643	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgacaaaaattattgtttTgtagtaatttttgccttttg	7	3	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120240643	C	C	120240643	1	2	158	0	1	0	0	0	0	0	0	0	5403	1827	63	5		5	FABP2	4	120240643	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5960547	120240643	70913633	196	133108											
PRDM5	11107	broad.mit.edu	37	chr4	121828811	121828811	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtttttctgcaaatcttCatgcccaaagaagagatgct	7	8	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121828811	A	A	121828811	1	1	158	0	1	0	0	0	0	0	0	0	12566	841	29	3		3	PRDM5	4	121828811	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1588168	121828811	69325465	197	133109											
EXOSC9	5393	broad.mit.edu	37	chr4	122734443	122734443	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagcaaatcaaaggatcacAgcatttaaaatggaaaaggc	8	6	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122734443	T	T	122734443	2	4	158	1	0	0	0	0	0	0	0	1	5364	175	7	5		5	EXOSC9	4	122734443	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	905632	122734443	68419833	198	133110											
KIAA1109	84162	broad.mit.edu	37	chr4	123271219	123271219	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaacctagaaaaaagttcAcaagaacaatgtaagaatta	6	6	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123271219	T	T	123271219	2	4	158	1	0	0	0	0	0	0	0	1	8278	146	6	5		5	KIAA1109	4	123271219	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	536776	123271219	67883057	199	133111											
SLC25A31	83447	broad.mit.edu	37	chr4	128694757	128694757	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtaaattaagaaatacatgGatttaacttgttaaacatac	5	4	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128694757	T	T	128694757	1	4	158	0	1	0	0	0	0	0	0	0	14609	1189	41	3		3	SLC25A31	4	128694757	3'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	5423538	128694757	62459519	200	133112											
GYPA	2993	broad.mit.edu	37	chr4	145039783	145039783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatatgctcttctaagatAgacacattttcttaggcatt	5	8	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145039783	G	G	145039783	1	3	158	0	1	0	0	0	0	0	0	0	6973	435	15	5		5	GYPA	4	145039783	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	16345026	145039783	46114493	201	133113											
POU4F2	5458	broad.mit.edu	37	chr4	147562010	147562010	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcgtccgctcttttcTctcctctcttctgcctcttt	3	17	5	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147562010	A	A	147562010	1	1	158	0	1	0	0	0	0	0	0	0	12375	1566	54	5		5	POU4F2	4	147562010	3'UTR	SNP	T	TCGA-50-5931-01A-11D-1753-08	2522227	147562010	43592266	202	133114											
KIAA0922	23240	broad.mit.edu	37	chr4	154504246	154504246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatagaaatgtgtaatgtgGtattttaatgattatatgaa	8	0	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154504246	T	T	154504246	1	4	158	0	1	0	0	0	0	0	0	0	8271	1276	44	3		3	KIAA0922	4	154504246	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	6942236	154504246	36650030	203	133115											
TDO2	6999	broad.mit.edu	37	chr4	156831336	156831336	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctacttaaatctgagcaGgaaaagacacttctggaatt	8	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156831336	C	C	156831336	3	2	158	1	0	0	0	0	1	0	0	0	15849	991	35	4	613	4	TDO2	4	156831336	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	2327090	156831336	34322940	204	133116											
FSTL5	56884	broad.mit.edu	37	chr4	162459211	162459211	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatctatttgttataaTgcattgtgcaattcacagtt	5	5	2	0	rs78198058	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162459211	C	C	162459211	1	2	158	0	1	0	0	0	0	0	0	0	6140	1479	51	5		5	FSTL5	4	162459211	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5627875	162459211	28695065	205	133117											
DDX60	55601	broad.mit.edu	37	chr4	169188881	169188881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttccacatcaatggaaaTgtaatcactgaaacaaattt	4	7	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169188881	C	C	169188881	1	2	158	0	1	0	0	0	0	0	0	0	4411	1479	51	5		5	DDX60	4	169188881	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	6729670	169188881	21965395	206	133118											
PALLD	23022	broad.mit.edu	37	chr4	169842780	169842780	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctggtgcgtgagaacggGgtgcactctctgatcataga	14	8	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169842780	T	T	169842780	2	4	158	1	0	0	0	0	0	0	0	1	11501	1219	43	2		2	PALLD	4	169842780	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	653899	169842780	21311496	207	133119											
WDR17	116966	broad.mit.edu	37	chr4	177100788	177100788	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaactttcatgggttaGcattaccttaatctttgttg	7	6	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177100788	T	T	177100788	1	4	158	0	1	0	0	0	0	0	0	0	17404	986	34	3		3	WDR17	4	177100788	3'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	7258008	177100788	14053488	208	133120											
ZFP42	132625	broad.mit.edu	37	chr4	188923926	188923926	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtggttgatatatcctGgtgtaaaccttcaagaaggg	14	5	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188923926	T	T	188923926	1	4	158	0	1	0	0	0	0	0	0	0	17776	1363	47	2		2	ZFP42	4	188923926	5'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	11823138	188923926	2230350	209	133121											
IRX2	153572	broad.mit.edu	37	chr5	2749032	2749032	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcgtcgtcctcgtcgtcctCcaggtcgtcatacttgtcct	9	15	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2749032	G	G	2749032	3	3	158	1	0	0	0	0	1	0	0	0	7914	864	30	4	633	4	IRX2	5	2749032	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08		2749032	178166228	210	133122											
ADAMTS16	170690	broad.mit.edu	37	chr5	5191938	5191938	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggaggatggcatcccgaGttttttccttactggatgat	12	7	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5191938	A	A	5191938	1	1	158	0	1	0	0	0	0	0	0	0	261	1044	36	4		4	ADAMTS16	5	5191938	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2442906	5191938	175723322	211	133123											
ADCY2	108	broad.mit.edu	37	chr5	7724812	7724812	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgctcatgttttttataTgtgacatttaaactgcctct	6	7	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7724812	C	C	7724812	1	2	158	0	1	0	0	0	0	0	0	0	294	1479	51	5		5	ADCY2	5	7724812	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	2532874	7724812	173190448	212	133124											
DNAH5	1767	broad.mit.edu	37	chr5	13769806	13769806	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactggtccaataatgagtGgtaatggttatatctgaaga	11	4	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13769806	A	A	13769806	1	1	158	0	1	0	0	0	0	0	0	0	4644	1363	47	4		4	DNAH5	5	13769806	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	6044994	13769806	167145454	213	133125											
CDH18	1016	broad.mit.edu	37	chr5	19473883	19473883	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggaaggaaattcttagaGattttacaacagcaatttcc	7	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473883	T	T	19473883	1	4	158	0	1	0	0	0	0	0	0	0	3133	957	33	3		3	CDH18	5	19473883	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	5704077	19473883	161441377	214	133126											
CDH18	1016	broad.mit.edu	37	chr5	19747077	19747077	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgacatttcaggcacagtaAcaatgtatggtccatctgtg	9	9	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19747077	G	G	19747077	3	3	158	1	0	0	0	0	1	0	0	0	3133	43	2	5	1915	5	CDH18	5	19747077	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	273194	19747077	161168183	215	133127											
CDH9	1007	broad.mit.edu	37	chr5	26916033	26916033	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcttggtcagtgtgaagCtttagagaggtagaaaagaa	12	3	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26916033	A	A	26916033	5	1	158	1	0	0	0	0	0	0	1	0	3147	811	28	3	2181	3	CDH9	5	26916033	Splice_Site	SNP	C	TCGA-50-5931-01A-11D-1753-08	7168956	26916033	153999227	216	133128											
PDZD2	23037	broad.mit.edu	37	chr5	31725709	31725709	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagacctagactatgatcttGactgagatttggatctaggt	10	6	2	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31725709	T	T	31725709	1	4	158	0	1	0	0	0	0	0	0	0	11795	1305	45	3		3	PDZD2	5	31725709	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4809676	31725709	149189551	217	133129											
ADAMTS12	81792	broad.mit.edu	37	chr5	33615820	33615820	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctccctgctccttgcTaaaagaggttttaaagattc	6	12	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33615820	A	A	33615820	1	1	158	0	1	0	0	0	0	0	0	0	257	1537	53	5		5	ADAMTS12	5	33615820	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	1890111	33615820	147299440	218	133130											
SPEF2	79925	broad.mit.edu	37	chr5	35793529	35793529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgatgttacattgacagGtctcaggccagtgcattgct	10	9	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35793529	T	T	35793529	1	4	158	0	1	0	0	0	0	0	0	0	15153	1276	44	3		3	SPEF2	5	35793529	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2177709	35793529	145121731	219	133131											
RICTOR	253260	broad.mit.edu	37	chr5	39021212	39021212	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatctggccacattttggaGaatctctcttaagttatcag	7	9	4	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39021212	A	A	39021212	3	1	158	1	0	0	0	0	1	0	0	0	13467	942	33	4	5146	4	RICTOR	5	39021212	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	3227683	39021212	141894048	220	133132											
C6	729	broad.mit.edu	37	chr5	41142976	41142976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccatcttcctgtttgcaCatcttatagttcccacttca	3	13	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41142976	A	A	41142976	3	1	158	1	0	0	0	0	1	0	0	0	2338	478	17	3	52	3	C6	5	41142976	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2121764	41142976	139772284	221	133133											
EMB	133418	broad.mit.edu	37	chr5	49699008	49699008	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacaaaaaaaagaaatcCcacctgagtgcttctttttc	4	9	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49699008	T	T	49699008	1	4	158	0	1	0	0	0	0	0	0	0	5127	638	22	4		4	EMB	5	49699008	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	8556032	49699008	131216252	222	133134											
PARP8	79668	broad.mit.edu	37	chr5	50056133	50056133	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactttctttcagaattaagAaaaacaaatgacattaactg	4	6	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50056133	T	T	50056133	3	4	158	1	0	0	0	0	1	0	0	0	11559	243	9	5	300	5	PARP8	5	50056133	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	357125	50056133	130859127	223	133135											
ITGA2	3673	broad.mit.edu	37	chr5	52371155	52371155	+	Intron	DEL	C	-	-													gtaggtgaagcagtgggtaaCctgctatcactgacaccaac							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52371155	-	-	52371155	6	5	158	0	1	1	0	1	0	0	0	0	7945	522	18	0		0	ITGA2	5	52371155	Intron	DEL	C	TCGA-50-5931-01A-11D-1753-08	2315022	52371155	128544105	224	133136											
FOXD1	2297	broad.mit.edu	37	chr5	72743820	72743820	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgagtagggcggcttcaccAgcgggttcttggcgccgcta	15	12	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72743820	T	T	72743820	3	4	158	1	0	0	0	0	1	0	0	0	6054	188	7	5	1031	5	FOXD1	5	72743820	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	20372665	72743820	108171440	225	133137											
ZFYVE16	9765	broad.mit.edu	37	chr5	79735980	79735980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaattatctggcttaggtGggacatcccaaggcttggtt	12	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79735980	T	T	79735980	1	4	158	0	1	0	0	0	0	0	0	0	17790	1363	47	2		2	ZFYVE16	5	79735980	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	6992160	79735980	101179280	226	133138											
RASGRF2	5924	broad.mit.edu	37	chr5	80388641	80388641	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctcttattcaagtaccttCcgttgagagggggaaactta	9	8	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80388641	T	T	80388641	3	4	158	1	0	0	0	0	1	0	0	0	13181	855	30	4	1450	4	RASGRF2	5	80388641	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	652661	80388641	100526619	227	133139											
XRCC4	7518	broad.mit.edu	37	chr5	82491599	82491599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattttagttcagacttgGttccttcaacctagagaaag	7	8	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82491599	T	T	82491599	3	4	158	1	0	0	0	0	1	0	0	0	17582	1261	44	3	336	3	XRCC4	5	82491599	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	2102958	82491599	98423661	228	133140											
HAPLN1	1404	broad.mit.edu	37	chr5	82937473	82937474	+	Missense_Mutation	DNP	GG	TT	TT													caaccagcccgcatcacagcGgtcatatccgagaattttcc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	82937474	TT	TT	82937473	3	4	158	1	0	0	0	0	1	0	0	0	7020	1116	39	1	161	1	HAPLN1	5	82937473	Missense_Mutation	DNP	GG	TCGA-50-5931-01A-11D-1753-08	445874	82937473	97977787	229	133141											
MCC	4163	broad.mit.edu	37	chr5	112421168	112421168	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcattatattccttttttCggactaataattttttttta	3	5	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112421168	T	T	112421168	1	4	158	0	1	0	0	0	0	0	0	0	9466	899	31	4		4	MCC	5	112421168	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	29483695	112421168	68494092	230	133142											
CATSPER3	347732	broad.mit.edu	37	chr5	134346177	134346177	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagcttacccttcatcgatAtctacttttccactctggac	4	14	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134346177	T	T	134346177	3	4	158	1	0	0	0	0	1	0	0	0	2715	449	16	5	1077	5	CATSPER3	5	134346177	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	21925009	134346177	46569083	231	133143											
TGFBI	7045	broad.mit.edu	37	chr5	135382901	135382902	+	Intron	INS	-	T	T													aaacactgttttctcctcccINSggggctttgggactatgcct							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135382902	T	T	135382901	6	5	158	0	1	1	1	0	0	0	0	0	15943	667	23	0		0	TGFBI	5	135382901	Intron	INS	-	TCGA-50-5931-01A-11D-1753-08	1036724	135382901	45532359	232	133144											
FAM13B	51306	broad.mit.edu	37	chr5	137289287	137289287	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccctaacactaaaggacaGgtagtataaagaaacactgt	8	8	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137289287	A	A	137289287	1	1	158	0	1	0	0	0	0	0	0	0	5499	1015	35	4		4	FAM13B	5	137289287	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1906386	137289287	43625973	233	133145											
KIF20A	10112	broad.mit.edu	37	chr5	137515415	137515415	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcgggcttgctgtccgatGacgatgtcgtagtttctccc	12	12	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137515415	T	T	137515415	3	4	158	1	0	0	0	0	1	0	0	0	8356	1290	45	3	48	3	KIF20A	5	137515415	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	226128	137515415	43399845	234	133146											
CXXC5	51523	broad.mit.edu	37	chr5	139060145	139060146	+	Missense_Mutation	DNP	GG	TT	TT													gtggctcccaggatgccggcGgcagtagcagcagcagcacc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	139060146	TT	TT	139060145	3	4	158	1	0	0	0	0	1	0	0	0	4132	1116	39	1	39	1	CXXC5	5	139060145	Missense_Mutation	DNP	GG	TCGA-50-5931-01A-11D-1753-08	1544730	139060145	41855115	235	133147											
PCDHA12	56137	broad.mit.edu	37	chr5	140256399	140256399	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccgtggaggtggccgacGtgaacgacaatgcgcctgcg	16	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140256399	A	A	140256399	3	1	158	1	0	0	0	0	1	0	0	0	11616	1145	40	4	1344	4	PCDHA12	5	140256399	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1196254	140256399	40658861	236	133148											
PCDHB2	56133	broad.mit.edu	37	chr5	140475631	140475631	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggagaccagatccgaataCaacatcaccatcaccgtcac	7	15	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140475631	A	A	140475631	4	1	158	1	0	0	0	0	0	1	0	0	11636	489	17	3	1259	3	PCDHB2	5	140475631	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	219232	140475631	40439629	237	133149											
PCDHB3	56132	broad.mit.edu	37	chr5	140480379	140480379	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttaatagccaacctagCaaaggatctgggactaaggg	10	8	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140480379	T	T	140480379	3	4	158	1	0	0	0	0	1	0	0	0	11637	710	25	4	148	4	PCDHB3	5	140480379	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	4748	140480379	40434881	238	133150											
PCDHB8	56128	broad.mit.edu	37	chr5	140559000	140559000	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctacaccctgttcgtccGcgagaacaacagccccgccc	7	20	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140559000	C	C	140559000	3	2	158	1	0	0	0	0	1	0	0	0	11642	1087	38	4	1387	4	PCDHB8	5	140559000	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	78621	140559000	40356260	239	133151											
PCDHGA5	56110	broad.mit.edu	37	chr5	140744879	140744879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggatggaggcgctcttGttgccagcgctaaggtggtg	16	9	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140744879	T	T	140744879	3	4	158	1	0	0	0	0	1	0	0	0	11651	1377	48	3	984	3	PCDHGA5	5	140744879	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	185879	140744879	40170381	240	133152											
LARS	51520	broad.mit.edu	37	chr5	145523006	145523006	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagactctgcctgtccatGcaagttacccccctgcaata	8	15	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145523006	A	A	145523006	3	1	158	1	0	0	0	0	1	0	0	0	8706	1319	46	4	1740	4	LARS	5	145523006	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	4778127	145523006	35392254	241	133153											
GM2A	2760	broad.mit.edu	37	chr5	150761733	150761733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattgaaggctttggtgtgCatggcactgaatgagcagcg	15	6	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150761733	A	A	150761733	1	1	158	0	1	0	0	0	0	0	0	0	6548	725	25	3		3	GM2A	5	150761733	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	5238727	150761733	30153527	242	133154											
GEMIN5	25929	broad.mit.edu	37	chr5	154270801	154270801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacttgcctcagtacttacCactggctctgagaactgcag	9	12	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154270801	A	A	154270801	3	1	158	1	0	0	0	0	1	0	0	0	6395	608	21	2	276	2	GEMIN5	5	154270801	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	3509068	154270801	26644459	243	133155											
SLIT3	6586	broad.mit.edu	37	chr5	168222600	168222600	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtctgggaaacagagcagAgaagagtgaattaaccatcc	12	8	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168222600	G	G	168222600	1	3	158	0	1	0	0	0	0	0	0	0	14855	319	11	5		5	SLIT3	5	168222600	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	13951799	168222600	12692660	244	133156											
SLIT3	6586	broad.mit.edu	37	chr5	168690706	168690706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagacaccccacactcccCctgcagcctcccccagctgc	5	24	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168690706	A	A	168690706	1	1	158	0	1	0	0	0	0	0	0	0	14855	638	22	2		2	SLIT3	5	168690706	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	468106	168690706	12224554	245	133157											
RANBP17	64901	broad.mit.edu	37	chr5	170626623	170626623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcaatgctgaggacaatGtacaattctatgcattttaa	6	8	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170626623	T	T	170626623	1	4	158	0	1	0	0	0	0	0	0	0	13135	1392	48	3		3	RANBP17	5	170626623	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1935917	170626623	10288637	246	133158											
HK3	3101	broad.mit.edu	37	chr5	176314548	176314549	+	Missense_Mutation	DNP	CC	AA	AA													catggccttccgcatctgtgCctgaaccgcagccagttgat							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	176314549	AA	AA	176314548	3	1	158	1	0	0	0	0	1	0	0	0	7259	739	26	3	1303	3	HK3	5	176314548	Missense_Mutation	DNP	CC	TCGA-50-5931-01A-11D-1753-08	5687925	176314548	4600712	247	133159											
ADAMTS2	9509	broad.mit.edu	37	chr5	178585638	178585638	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgacactcttccctgggcTgggccaaggctcccggggcc	13	17	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178585638	C	C	178585638	1	2	158	0	1	0	0	0	0	0	0	0	265	1595	55	5		5	ADAMTS2	5	178585638	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	2271090	178585638	2329622	248	133160											
FLT4	2324	broad.mit.edu	37	chr5	180047710	180047710	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccatgctgcccttatcctCggagcctgcgtgggcagaaa	11	14	0	1	rs144822344		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180047710	A	A	180047710	4	1	158	1	0	0	0	0	0	1	0	0	6002	893	31	3	1854	3	FLT4	5	180047710	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1462072	180047710	867550	249	133161											
OR2V2	285659	broad.mit.edu	37	chr5	180581967	180581967	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacgtgggtgaaccagtccTacacagatggcttcttcctc	10	12	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180581967	A	A	180581967	3	1	158	1	0	0	0	0	1	0	0	0	11125	1522	53	5	27	5	OR2V2	5	180581967	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	534257	180581967	333293	250	133162											
GPLD1	2822	broad.mit.edu	37	chr6	24447133	24447133	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgtccacagtgacaccgtGaagggaatatccaaaccagg	11	10	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24447133	A	A	24447133	3	1	158	1	0	0	0	0	1	0	0	0	6679	1290	45	4	801	4	GPLD1	6	24447133	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08		24447133	146667934	251	133163											
ALDH5A1	7915	broad.mit.edu	37	chr6	24533937	24533937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgtgttacgggggcttGtaggattctttggttcttta	13	4	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24533937	T	T	24533937	3	4	158	1	0	0	0	0	1	0	0	0	502	1368	48	3	1686	3	ALDH5A1	6	24533937	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	86804	24533937	146581130	252	133164											
BTN1A1	696	broad.mit.edu	37	chr6	26509112	26509112	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcctagactatgaatcaGgagacatctccttctacaac	5	11	3	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26509112	T	T	26509112	4	4	158	1	0	0	0	0	0	1	0	0	1569	1001	35	2	1317	2	BTN1A1	6	26509112	Nonsense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1975175	26509112	144605955	253	133165											
GPX5	2880	broad.mit.edu	37	chr6	28501899	28501899	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgggctacggtcagctcagtCaagacagacatcctggcgta	12	12	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28501899	T	T	28501899	2	4	158	1	0	0	0	0	0	0	0	1	6809	813	29	4		4	GPX5	6	28501899	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	1992787	28501899	142613168	254	133166											
OR12D2	26529	broad.mit.edu	37	chr6	29364862	29364862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctatctgcaagccacttcGctacactgtcatcatgaacc	7	14	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29364862	T	T	29364862	3	4	158	1	0	0	0	0	1	0	0	0	11025	1087	38	3	388	3	OR12D2	6	29364862	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	862963	29364862	141750205	255	133167											
GABBR1	2550	broad.mit.edu	37	chr6	29595311	29595311	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatagtccggcaggatgtcCctgcggctattcacgtcctc	10	14	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29595311	A	A	29595311	3	1	158	1	0	0	0	0	1	0	0	0	6215	622	22	2	2348	2	GABBR1	6	29595311	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	230449	29595311	141519756	256	133168											
COL11A2	1302	broad.mit.edu	37	chr6	33136570	33136570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggtcagaggtgggcccCcaacctggctggcatcacct	13	14	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33136570	A	A	33136570	1	1	158	0	1	0	0	0	0	0	0	0	3700	638	22	2		2	COL11A2	6	33136570	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	3541259	33136570	137978497	257	133169											
GRM4	2914	broad.mit.edu	37	chr6	34003675	34003675	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcacacccctggcgaagcGggggtcgagtgtccgctggt	17	12	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34003675	A	A	34003675	3	1	158	1	0	0	0	0	1	0	0	0	6865	1116	39	4	538	4	GRM4	6	34003675	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	867105	34003675	137111392	258	133170											
C6orf81	221481	broad.mit.edu	37	chr6	35715159	35715160	+	Missense_Mutation	DNP	GG	TT	TT													tgtgcatccacagctgcgacGggtgatgcctgccttgatgg							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	35715160	TT	TT	35715159	3	4	158	1	0	0	0	0	1	0	0	0	2396	1116	39	1	661	1	C6orf81	6	35715159	Missense_Mutation	DNP	GG	TCGA-50-5931-01A-11D-1753-08	1711484	35715159	135399908	259	133171											
DNAH8	1769	broad.mit.edu	37	chr6	38743667	38743667	+	Frame_Shift_Del	DEL	A	-	-													caatatgacattctggatccAagaaggacagaatttgacac							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38743667	-	-	38743667	7	5	158	1	0	1	0	1	0	0	0	0	4647	117	5	0	1285	0	DNAH8	6	38743667	Frame_Shift_Del	DEL	A	TCGA-50-5931-01A-11D-1753-08	3028508	38743667	132371400	260	133172											
DNAH8	1769	broad.mit.edu	37	chr6	38939605	38939605	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttcctcctgatattcgcAtggaaagcttattccatttt	6	9	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38939605	T	T	38939605	1	4	158	0	1	0	0	0	0	0	0	0	4647	232	8	5		5	DNAH8	6	38939605	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	195938	38939605	132175462	261	133173											
GUCA1B	2979	broad.mit.edu	37	chr6	42162358	42162358	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagggtgccttaccccattCttgtcgaaggctcggaacat	10	12	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42162358	A	A	42162358	3	1	158	1	0	0	0	0	1	0	0	0	6954	912	32	3	417	3	GUCA1B	6	42162358	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	3222753	42162358	128952709	262	133174											
TFAP2B	7021	broad.mit.edu	37	chr6	50796255	50796255	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaataacagaaactccaGtttggaataacatgatttat	7	5	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50796255	A	A	50796255	1	1	158	0	1	0	0	0	0	0	0	0	15911	1044	36	4		4	TFAP2B	6	50796255	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	8633897	50796255	120318812	263	133175											
TMEM14A	28978	broad.mit.edu	37	chr6	52548938	52548938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtccaagaaaataatgCctgctggtttggttgcaggt	13	6	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52548938	A	A	52548938	3	1	158	1	0	0	0	0	1	0	0	0	16186	739	26	3	245	3	TMEM14A	6	52548938	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1752683	52548938	118566129	264	133176											
GCLC	2729	broad.mit.edu	37	chr6	53364800	53364800	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacattctaagattatacCatgctgtctatattatgaga	6	6	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53364800	T	T	53364800	1	4	158	0	1	0	0	0	0	0	0	0	6357	609	21	4		4	GCLC	6	53364800	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	815862	53364800	117750267	265	133177											
GFRAL	389400	broad.mit.edu	37	chr6	55216094	55216094	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaagtggcagaggcatgTgtaggggatgtggtctgtaa	18	3	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55216094	C	C	55216094	2	2	158	1	0	0	0	0	0	0	0	1	6415	1702	59	5		5	GFRAL	6	55216094	Silent	SNP	T	TCGA-50-5931-01A-11D-1753-08	1851294	55216094	115898973	266	133178											
COL21A1	81578	broad.mit.edu	37	chr6	55924964	55924964	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagccatgttgggacagGcaatgatcacaatttctaat	12	7	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55924964	T	T	55924964	4	4	158	1	0	0	0	0	0	1	0	0	3712	1195	42	3	425	3	COL21A1	6	55924964	Nonsense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	708870	55924964	115190103	267	133179											
DST	667	broad.mit.edu	37	chr6	56469819	56469819	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattaaaacatggcttgggaCatcttcatttggtttggcta	9	6	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56469819	T	T	56469819	1	4	158	0	1	0	0	0	0	0	0	0	4823	493	17	4		4	DST	6	56469819	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	544855	56469819	114645248	268	133180											
DST	667	broad.mit.edu	37	chr6	56472232	56472232	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttcataataggattttcTattaaatcacttggaaagtt	6	4	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56472232	C	C	56472232	1	2	158	0	1	0	0	0	0	0	0	0	4823	1537	53	5		5	DST	6	56472232	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	2413	56472232	114642835	269	133181											
BAI3	577	broad.mit.edu	37	chr6	70092758	70092758	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaagaggcatatggaactAtttcaagaactaaatcagaa	9	5	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70092758	G	G	70092758	2	3	158	1	0	0	0	0	0	0	0	1	1305	436	16	5		5	BAI3	6	70092758	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	13620526	70092758	101022309	270	133182											
COL19A1	1310	broad.mit.edu	37	chr6	70916968	70916968	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgcccatcagcgcacagGtgggaattgaacacacctga	10	12	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70916968	A	A	70916968	3	1	158	1	0	0	0	0	1	0	0	0	3708	1261	44	4	3617	4	COL19A1	6	70916968	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	824210	70916968	100198099	271	133183											
COL9A1	1297	broad.mit.edu	37	chr6	71004158	71004158	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaacttgctccttcccagaGgaatcctgaatctgccaaat	6	14	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71004158	C	C	71004158	2	2	158	1	0	0	0	0	0	0	0	1	3739	987	35	4		4	COL9A1	6	71004158	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	87190	71004158	100110909	272	133184											
RIMS1	22999	broad.mit.edu	37	chr6	73102459	73102459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attcagtgattttcttgatgGattgggaccagcccagcttg	11	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73102459	T	T	73102459	3	4	158	1	0	0	0	0	1	0	0	0	13478	1174	41	3	4850	3	RIMS1	6	73102459	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	2098301	73102459	98012608	273	133185											
CD109	135228	broad.mit.edu	37	chr6	74528210	74528210	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttctctgagcgagacagtGaagaaagtggaatatgatca	11	5	2	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74528210	T	T	74528210	2	4	158	1	0	0	0	0	0	0	0	1	2993	1277	45	3		3	CD109	6	74528210	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	1425751	74528210	96586857	274	133186											
ME1	4199	broad.mit.edu	37	chr6	84102595	84102595	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaatgcctcctgcaccacCagctgcttaacgcccctggc	8	18	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84102595	G	G	84102595	1	3	158	0	1	0	0	0	0	0	0	0	9510	609	21	4		4	ME1	6	84102595	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	9574385	84102595	87012472	275	133187											
GABRR2	2570	broad.mit.edu	37	chr6	89981397	89981397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccacctcggagatgctgtCcaggctctccacctgtacgt	10	15	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89981397	A	A	89981397	3	1	158	1	0	0	0	0	1	0	0	0	6237	855	30	3	1160	3	GABRR2	6	89981397	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	5878802	89981397	81133670	276	133188											
MDN1	23195	broad.mit.edu	37	chr6	90437795	90437795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactactcttccttcctacaCccaagatagaactaaccaat	2	15	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90437795	A	A	90437795	1	1	158	0	1	0	0	0	0	0	0	0	9508	522	18	3		3	MDN1	6	90437795	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	456398	90437795	80677272	277	133189											
SIM1	6492	broad.mit.edu	37	chr6	100838768	100838768	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccattaatggaagccagttgGtctgagggggctttccttag	13	8	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100838768	C	C	100838768	3	2	158	1	0	0	0	0	1	0	0	0	14436	1252	44	4	534	4	SIM1	6	100838768	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	10400973	100838768	70276299	278	133190											
BVES	11149	broad.mit.edu	37	chr6	105549026	105549026	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaaaaacgtcatcatcatCttctgctccttcttctatcg	3	13	8	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105549026	G	G	105549026	3	3	158	1	0	0	0	0	1	0	0	0	1585	913	32	4	65	4	BVES	6	105549026	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	4710258	105549026	65566041	279	133191											
FIG4	9896	broad.mit.edu	37	chr6	110086283	110086283	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacagcacagtttatggtggGaaaatgtgctctggcctatc	11	9	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110086283	A	A	110086283	3	1	158	1	0	0	0	0	1	0	0	0	5945	1174	41	4	1556	4	FIG4	6	110086283	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	4537257	110086283	61028784	280	133192											
LAMA4	3910	broad.mit.edu	37	chr6	112513053	112513053	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catagtaaccgggagcacatCtgaagaggaatatcacacat	9	9	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112513053	A	A	112513053	5	1	158	1	0	0	0	0	0	0	1	0	8680	927	32	3	5104	3	LAMA4	6	112513053	Splice_Site	SNP	C	TCGA-50-5931-01A-11D-1753-08	2426770	112513053	58602014	281	133193											
RSPO3	84870	broad.mit.edu	37	chr6	127440428	127440428	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccggggaaggcgccagCgaagaagtaagtgcagggtt	16	10	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127440428	A	A	127440428	2	1	158	1	0	0	0	0	0	0	0	1	13822	760	27	3		3	RSPO3	6	127440428	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	14927375	127440428	43674639	282	133194											
EYA4	2070	broad.mit.edu	37	chr6	133782348	133782348	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtagattcttgctttaaaTtggcaaacatttatgtctat	6	6	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133782348	C	C	133782348	1	2	158	0	1	0	0	0	0	0	0	0	5374	1508	52	5		5	EYA4	6	133782348	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	6341920	133782348	37332719	283	133195											
EYA4	2070	broad.mit.edu	37	chr6	133849905	133849905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccagtcactcagacctcCtggctctccaccaagcactg	6	17	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133849905	A	A	133849905	3	1	158	1	0	0	0	0	1	0	0	0	5374	680	24	2	2061	2	EYA4	6	133849905	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	67557	133849905	37265162	284	133196											
AHI1	54806	broad.mit.edu	37	chr6	135611746	135611746	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctttgatctagggccGtggcagtggaaacaaaaatg	14	6	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135611746	A	A	135611746	1	1	158	0	1	0	0	0	0	0	0	0	413	1160	40	4		4	AHI1	6	135611746	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1761841	135611746	35503321	285	133197											
LTV1	84946	broad.mit.edu	37	chr6	144178809	144178809	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacccttcctgaaataccttCcaattttacttgtgtaaagt	4	10	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144178809	T	T	144178809	1	4	158	0	1	0	0	0	0	0	0	0	9168	870	30	4		4	LTV1	6	144178809	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	8567063	144178809	26936258	286	133198											
MTHFD1L	25902	broad.mit.edu	37	chr6	151247409	151247409	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttaaaggatcaagcagatGgaaaatacgtcttagttgct	11	5	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151247409	T	T	151247409	4	4	158	1	0	0	0	0	0	1	0	0	10022	1349	47	2	1276	2	MTHFD1L	6	151247409	Nonsense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	7068600	151247409	19867658	287	133199											
PLG	5340	broad.mit.edu	37	chr6	161134032	161134032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagattctcacctgctaCacacccctcagagggactgg	8	17	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161134032	A	A	161134032	3	1	158	1	0	0	0	0	1	0	0	0	12181	478	17	3	444	3	PLG	6	161134032	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	9886623	161134032	9981035	288	133200											
PDE10A	10846	broad.mit.edu	37	chr6	165843644	165843644	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccataatatgattaaccgtTcccagactacttgtaaagac	5	10	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165843644	A	A	165843644	1	1	158	0	1	0	0	0	0	0	0	0	11724	1798	62	5		5	PDE10A	6	165843644	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	4709612	165843644	5271423	289	133201											
FAM120B	84498	broad.mit.edu	37	chr6	170639495	170639495	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacactgtgagcctggcgatGcatgccctcatgcatctact	10	13	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170639495	C	C	170639495	1	2	158	0	1	0	0	0	0	0	0	0	5463	1334	46	4		4	FAM120B	6	170639495	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4795851	170639495	475572	290	133202											
ZDHHC4	55146	broad.mit.edu	37	chr7	6628216	6628216	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catggatgtcacagtccagcTgcctaaagcactaccttttc	7	13	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6628216	C	C	6628216	1	2	158	0	1	0	0	0	0	0	0	0	17743	1595	55	5		5	ZDHHC4	7	6628216	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08		6628216	152510447	291	133203											
THSD7A	221981	broad.mit.edu	37	chr7	11860796	11860796	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgtttatgtaatgtcattCctgaggacccaaagtgatgc	10	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11860796	A	A	11860796	1	1	158	0	1	0	0	0	0	0	0	0	16002	870	30	3		3	THSD7A	7	11860796	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	5232580	11860796	147277867	292	133204											
ETV1	2115	broad.mit.edu	37	chr7	13950827	13950827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtctgattattctgaaCggtatttacacggaatttca	9	6	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13950827	A	A	13950827	1	1	158	0	1	0	0	0	0	0	0	0	5319	551	19	3		3	ETV1	7	13950827	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2090031	13950827	145187836	293	133205											
ETV1	2115	broad.mit.edu	37	chr7	13971234	13971234	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttcatacactgggtcgTggtactcctgcttaaagcct	10	10	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13971234	A	A	13971234	3	1	158	1	0	0	0	0	1	0	0	0	5319	1696	59	5	762	5	ETV1	7	13971234	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	20407	13971234	145167429	294	133206											
DGKB	1607	broad.mit.edu	37	chr7	14216483	14216484	+	Frame_Shift_Ins	INS	-	A	A													tgtgcatggggtctgcatccINSatggctccccatcaatttgc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14216484	A	A	14216483	7	5	158	1	0	1	1	0	0	0	0	0	4506	595	21	0	149	0	DGKB	7	14216483	Frame_Shift_Ins	INS	-	TCGA-50-5931-01A-11D-1753-08	245249	14216483	144922180	295	133207											
HDAC9	9734	broad.mit.edu	37	chr7	18801963	18801963	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactatcattagtcaacgctGgtgtcagttcaaaatacttg	7	9	4	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18801963	A	A	18801963	1	1	158	0	1	0	0	0	0	0	0	0	7081	1363	47	4		4	HDAC9	7	18801963	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4585480	18801963	140336700	296	133208											
BBS9	27241	broad.mit.edu	37	chr7	33644462	33644462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgcttaaaatattgtttGtatttttcaactaggtggtt	7	4	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33644462	T	T	33644462	1	4	158	0	1	0	0	0	0	0	0	0	1347	1392	48	3		3	BBS9	7	33644462	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	14842499	33644462	125494201	297	133209											
TARP	445347	broad.mit.edu	37	chr7	38304888	38304889	+	Intron	INS	-	A	A													ttttcattaatactgaaaggINSaaaaaatgcagcattcactt							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38304889	A	A	38304888	6	5	158	0	1	1	1	0	0	0	0	0	15677	1189	41	0		0	TARP	7	38304888	Intron	INS	-	TCGA-50-5931-01A-11D-1753-08	4660426	38304888	120833775	298	133210											
C7orf69	80099	broad.mit.edu	37	chr7	47859104	47859104	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcactttgttttgcacacaGcaccacctactggcacaggc	7	14	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47859104	A	A	47859104	5	1	158	1	0	0	0	0	0	0	1	0	2439	985	34	4	288	4	C7orf69	7	47859104	Splice_Site	SNP	G	TCGA-50-5931-01A-11D-1753-08	9554216	47859104	111279559	299	133211											
ABCA13	154664	broad.mit.edu	37	chr7	48312879	48312879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcccacccataatgttGctagactcatattaaatttg	4	10	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48312879	T	T	48312879	3	4	158	1	0	0	0	0	1	0	0	0	31	1319	46	3	3511	3	ABCA13	7	48312879	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	453775	48312879	110825784	300	133212											
CALN1	83698	broad.mit.edu	37	chr7	71252877	71252877	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggtctgtctgttctgcttCtgggaatgcactggtggtgg	15	8	4	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71252877	A	A	71252877	3	1	158	1	0	0	0	0	1	0	0	0	2617	912	32	3	120	3	CALN1	7	71252877	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	22939998	71252877	87885786	301	133213											
PCLO	27445	broad.mit.edu	37	chr7	82387927	82387927	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggactgaccaaaagtttgtgCcagttgactattctttttct	8	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82387927	G	G	82387927	3	3	158	1	0	0	0	0	1	0	0	0	11677	740	26	4	39	4	PCLO	7	82387927	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	11135050	82387927	76750736	302	133214											
PCLO	27445	broad.mit.edu	37	chr7	82579280	82579280	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctaccttggcatccactcGtgcccgtatggagggtgttc	11	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82579280	T	T	82579280	2	4	158	1	0	0	0	0	0	0	0	1	11677	1153	40	3		3	PCLO	7	82579280	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	191353	82579280	76559383	303	133215											
SEMA3D	223117	broad.mit.edu	37	chr7	84647693	84647693	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgttttatctgatgccatAtatcactgaagtaaacatca	6	7	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84647693	G	G	84647693	1	3	158	0	1	0	0	0	0	0	0	0	14140	464	16	5		5	SEMA3D	7	84647693	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	2068413	84647693	74490970	304	133216											
SEMA3D	223117	broad.mit.edu	37	chr7	84649437	84649437	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaactaagaaagctaAtttcaaaggcttcttcaggt	7	6	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84649437	G	G	84649437	1	3	158	0	1	0	0	0	0	0	0	0	14140	116	4	5		5	SEMA3D	7	84649437	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1744	84649437	74489226	305	133217											
DBF4	10926	broad.mit.edu	37	chr7	87525865	87525865	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtgtatttggtttgcatTtgaaaaatcataaaagatct	7	3	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87525865	G	G	87525865	1	3	158	0	1	0	0	0	0	0	0	0	4281	1856	64	5		5	DBF4	7	87525865	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	2876428	87525865	71612798	306	133218											
ADAM22	53616	broad.mit.edu	37	chr7	87563913	87563913	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccataccatttcccgggaAtctttggagccctcaggcgt	11	13	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87563913	G	G	87563913	1	3	158	0	1	0	0	0	0	0	0	0	244	116	4	5		5	ADAM22	7	87563913	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	38048	87563913	71574750	307	133219											
CALCR	799	broad.mit.edu	37	chr7	93116329	93116329	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctctttgtcctagaaaaaTataaaagcaacaaagactaa	4	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93116329	C	C	93116329	1	2	158	0	1	0	0	0	0	0	0	0	2605	1421	49	5		5	CALCR	7	93116329	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5552416	93116329	66022334	308	133220											
COL1A2	1278	broad.mit.edu	37	chr7	94058669	94058669	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggctgtcattctacaggGctctaatgatgttgaacttg	10	7	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94058669	C	C	94058669	3	2	158	1	0	0	0	0	1	0	0	0	3710	1203	42	4	4083	4	COL1A2	7	94058669	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	942340	94058669	65079994	309	133221											
CYP3A43	64816	broad.mit.edu	37	chr7	99445825	99445825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaatgtggagatatgttgGtgagaagcctgaggcaggaa	15	6	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99445825	T	T	99445825	3	4	158	1	0	0	0	0	1	0	0	0	4212	1261	44	3	491	3	CYP3A43	7	99445825	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	5387156	99445825	59692838	310	133222											
TAF6	6878	broad.mit.edu	37	chr7	99707700	99707700	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagagtcttgataacctgTtagaagggaaaaggacaagc	11	6	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99707700	G	G	99707700	1	3	158	0	1	0	0	0	0	0	0	0	15649	1740	60	5		5	TAF6	7	99707700	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	261875	99707700	59430963	311	133223											
ZCWPW1	55063	broad.mit.edu	37	chr7	100013588	100013588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaggtttgccaaaccagCtaaactcaccaaaaccactt	5	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100013588	A	A	100013588	1	1	158	0	1	0	0	0	0	0	0	0	17723	812	28	3		3	ZCWPW1	7	100013588	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	305888	100013588	59125075	312	133224											
MUC17	140453	broad.mit.edu	37	chr7	100675733	100675733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgccagcaccatgccgGttgccacttctgaaatgagc	10	15	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100675733	T	T	100675733	3	4	158	1	0	0	0	0	1	0	0	0	10068	1261	44	3	1046	3	MUC17	7	100675733	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	662145	100675733	58462930	313	133225											
PRKRIP1	79706	broad.mit.edu	37	chr7	102040200	102040200	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtggtggctcaggcctGtaatcccagcactttggaag	15	10	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102040200	C	C	102040200	1	2	158	0	1	0	0	0	0	0	0	0	12631	1392	48	4		4	PRKRIP1	7	102040200	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1364467	102040200	57098463	314	133226											
SRPK2	6733	broad.mit.edu	37	chr7	105029066	105029066	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccgacggggcgggggtgggGaacggggacaggcgcagcgt	23	10	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105029066	A	A	105029066	1	1	158	0	1	0	0	0	0	0	0	0	15278	1189	41	4		4	SRPK2	7	105029066	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2988866	105029066	54109597	315	133227											
C7orf60	154743	broad.mit.edu	37	chr7	112462041	112462041	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctactaaccaagtcacttgTggtttttagagagattttcc	7	9	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112462041	C	C	112462041	3	2	158	1	0	0	0	0	1	0	0	0	2432	1696	59	5	245	5	C7orf60	7	112462041	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	7432975	112462041	46676622	316	133228											
PTPRZ1	5803	broad.mit.edu	37	chr7	121653414	121653414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtagtgatggcttatcCattcataagtgtatgtcatg	11	5	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121653414	A	A	121653414	2	1	158	1	0	0	0	0	0	0	0	1	12922	581	21	2		2	PTPRZ1	7	121653414	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	9191373	121653414	37485249	317	133229											
GRM8	2918	broad.mit.edu	37	chr7	126410120	126410120	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagcaattcgctccagccCtgcaaaataaaaaagtaaaa	6	11	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126410120	A	A	126410120	5	1	158	1	0	0	0	0	0	0	1	0	6869	695	24	2	1640	2	GRM8	7	126410120	Splice_Site	SNP	C	TCGA-50-5931-01A-11D-1753-08	4756706	126410120	32728543	318	133230											
TRIM24	8805	broad.mit.edu	37	chr7	138189108	138189108	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagataacttttttgtgaaGgacactactgaggttcccag	9	7	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138189108	A	A	138189108	2	1	158	1	0	0	0	0	0	0	0	1	16622	991	35	4		4	TRIM24	7	138189108	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	11778988	138189108	20949555	319	133231											
MGAM	8972	broad.mit.edu	37	chr7	141767225	141767225	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagccctgtcctggagcgCgtgagtatggaggcctccga	15	12	1	1	rs7778384	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141767225	T	T	141767225	1	4	158	0	1	0	0	0	0	0	0	0	9634	783	27	4		4	MGAM	7	141767225	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	3578117	141767225	17371438	320	133232											
TMEM176A	55365	broad.mit.edu	37	chr7	150501866	150501866	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccctggaggagagactcCgccctttctctcccactcac	8	18	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150501866	T	T	150501866	1	4	158	0	1	0	0	0	0	0	0	0	16215	667	23	4		4	TMEM176A	7	150501866	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	8734641	150501866	8636797	321	133233											
MLL3	58508	broad.mit.edu	37	chr7	151962287	151962287	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacactgcacagtttgcatcTtccttcgctataattaacag	5	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151962287	A	A	151962287	3	1	158	1	0	0	0	0	1	0	0	0	9715	1606	56	5	13923	5	MLL3	7	151962287	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	1460421	151962287	7176376	322	133234											
CSMD1	64478	broad.mit.edu	37	chr8	2944645	2944645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggcgtgagggagtccCactggtacatgccaagtggg	17	8	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2944645	A	A	2944645	3	1	158	1	0	0	0	0	1	0	0	0	3978	595	21	2	3334	2	CSMD1	8	2944645	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08		2944645	143419377	323	133235											
MCPH1	79648	broad.mit.edu	37	chr8	6338124	6338124	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtaccataaccaaaatcagTttcaaattttggctttctag	5	9	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6338124	C	C	6338124	1	2	158	0	1	0	0	0	0	0	0	0	9491	1740	60	5		5	MCPH1	8	6338124	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	3393479	6338124	140025898	324	133236											
NEFM	4741	broad.mit.edu	37	chr8	24775339	24775339	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaggcaagtctcctgtgccGaaatcaccagtggaagagaa	11	9	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24775339	T	T	24775339	2	4	158	1	0	0	0	0	0	0	0	1	10411	1045	37	3		3	NEFM	8	24775339	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	18437215	24775339	121588683	325	133237											
CDCA2	157313	broad.mit.edu	37	chr8	25319822	25319822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgtttcaaatctggaGggagattttctctgtgtttt	10	6	4	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25319822	T	T	25319822	1	4	158	0	1	0	0	0	0	0	0	0	3116	1015	35	2		2	CDCA2	8	25319822	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	544483	25319822	121044200	326	133238											
ESCO2	157570	broad.mit.edu	37	chr8	27645382	27645382	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaattgtaaatttatataTatcaactttctgtgtcaaga	4	5	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27645382	C	C	27645382	1	2	158	0	1	0	0	0	0	0	0	0	5291	1421	49	5		5	ESCO2	8	27645382	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	2325560	27645382	118718640	327	133239											
ADAM18	8749	broad.mit.edu	37	chr8	39564276	39564276	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagatacaaagactaagacGactcaaactgtttctgtatt	6	8	3	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39564276	T	T	39564276	1	4	158	0	1	0	0	0	0	0	0	0	239	1073	37	3		3	ADAM18	8	39564276	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	11918894	39564276	106799746	328	133240											
ADAM18	8749	broad.mit.edu	37	chr8	39587426	39587426	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcactatagtaattcatcCgttgtatcagaaagcgatga	7	8	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39587426	A	A	39587426	2	1	158	1	0	0	0	0	0	0	0	1	239	639	23	1		1	ADAM18	8	39587426	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	23150	39587426	106776596	329	133241											
IDO1	3620	broad.mit.edu	37	chr8	39776266	39776266	+	Intron	DEL	A	-	-													caggagcaagactccatctcAaaaaaaaaaaaaaaaaaaaa							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39776266	-	-	39776266	6	5	158	0	1	1	0	1	0	0	0	0	7571	145	5	0		0	IDO1	8	39776266	Intron	DEL	A	TCGA-50-5931-01A-11D-1753-08	188840	39776266	106587756	330	133242											
POLB	5423	broad.mit.edu	37	chr8	42196225	42196225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcaccgggccgggccccGctggctttcttctttccttc	10	16	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42196225	T	T	42196225	1	4	158	0	1	0	0	0	0	0	0	0	12284	1102	38	3		3	POLB	8	42196225	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2419959	42196225	104167797	331	133243											
POLB	5423	broad.mit.edu	37	chr8	42218898	42218898	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaggtgcctcagagtttAtaatcaatggtgatcagtct	9	7	4	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42218898	G	G	42218898	1	3	158	0	1	0	0	0	0	0	0	0	12284	464	16	5		5	POLB	8	42218898	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	22673	42218898	104145124	332	133244											
HOOK3	84376	broad.mit.edu	37	chr8	42865485	42865485	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacaagaagctttacgaaaGaaagaggaagaaatgaagca	10	4	0	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42865485	C	C	42865485	3	2	158	1	0	0	0	0	1	0	0	0	7351	933	33	4	1850	4	HOOK3	8	42865485	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	646587	42865485	103498537	333	133245											
PRKDC	5591	broad.mit.edu	37	chr8	48710729	48710729	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgcacacactaacgcgttTgaatataaataagcgtatct	6	9	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48710729	A	A	48710729	1	1	158	0	1	0	0	0	0	0	0	0	12627	1827	63	5		5	PRKDC	8	48710729	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5845244	48710729	97653293	334	133246											
TRAM1	23471	broad.mit.edu	37	chr8	71506886	71506886	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttttttaaaaaaaagtaAacaaatactggaaatcagga	5	3	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71506886	C	C	71506886	1	2	158	0	1	0	0	0	0	0	0	0	16575	29	1	5		5	TRAM1	8	71506886	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	22796157	71506886	74857136	335	133247											
MSC	9242	broad.mit.edu	37	chr8	72754742	72754742	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagtgacagccacaccCgccacctgtcacgatcacag	9	16	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72754742	A	A	72754742	1	1	158	0	1	0	0	0	0	0	0	0	9962	667	23	1		1	MSC	8	72754742	3'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	1247856	72754742	73609280	336	133248											
ZFHX4	79776	broad.mit.edu	37	chr8	77763422	77763422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccagtatcatgcaattcGggctgcgacaatgtgtaacc	9	11	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77763422	T	T	77763422	3	4	158	1	0	0	0	0	1	0	0	0	17761	1116	39	1	4299	1	ZFHX4	8	77763422	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	5008680	77763422	68600600	337	133249											
ZFHX4	79776	broad.mit.edu	37	chr8	77764395	77764395	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattttatatacctgggacGgagttcagcttggggccaga	12	9	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77764395	T	T	77764395	2	4	158	1	0	0	0	0	0	0	0	1	17761	1103	39	1		1	ZFHX4	8	77764395	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	973	77764395	68599627	338	133250											
CNBD1	168975	broad.mit.edu	37	chr8	88296927	88296927	+	Frame_Shift_Del	DEL	G	-	-													ttagcaaatggagtacctttGggactctggaagttatgcct							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88296927	-	-	88296927	7	5	158	1	0	1	0	1	0	0	0	0	3623	1348	47	0	819	0	CNBD1	8	88296927	Frame_Shift_Del	DEL	G	TCGA-50-5931-01A-11D-1753-08	10532532	88296927	58067095	339	133251											
MMP16	4325	broad.mit.edu	37	chr8	89209482	89209482	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtctctgcagagcgcagCactgacattctggggtcagt	13	10	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89209482	T	T	89209482	2	4	158	1	0	0	0	0	0	0	0	1	9748	697	25	4		4	MMP16	8	89209482	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	912555	89209482	57154540	340	133252											
VPS13B	157680	broad.mit.edu	37	chr8	100245876	100245876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctcagcactggcatagGcctccactgtgcccttcaca	7	17	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100245876	T	T	100245876	1	4	158	0	1	0	0	0	0	0	0	0	17317	1218	42	3		3	VPS13B	8	100245876	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	11036394	100245876	46118146	341	133253											
OXR1	55074	broad.mit.edu	37	chr8	107752609	107752609	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaacaattggctatccAtggactcttgtttatggtac	8	9	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107752609	G	G	107752609	2	3	158	1	0	0	0	0	0	0	0	1	11428	204	8	5		5	OXR1	8	107752609	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	7506733	107752609	38611413	342	133254											
PKHD1L1	93035	broad.mit.edu	37	chr8	110420476	110420476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccacgcattttccctgcaCcctctcacatcattcatggg	5	16	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110420476	A	A	110420476	1	1	158	0	1	0	0	0	0	0	0	0	12067	522	18	3		3	PKHD1L1	8	110420476	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2667867	110420476	35943546	343	133255											
COL14A1	7373	broad.mit.edu	37	chr8	121262859	121262859	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctctttcttctttagttcCtggtccaacactggaaacgt	6	12	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121262859	G	G	121262859	3	3	158	1	0	0	0	0	1	0	0	0	3703	681	24	4	2688	4	COL14A1	8	121262859	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	10842383	121262859	25101163	344	133256											
COL22A1	169044	broad.mit.edu	37	chr8	139609068	139609068	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttttcttattccaggatgCaaaagcattcaaggctgagt	9	8	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139609068	T	T	139609068	1	4	158	0	1	0	0	0	0	0	0	0	3713	725	25	4		4	COL22A1	8	139609068	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	18346209	139609068	6754954	345	133257											
COL22A1	169044	broad.mit.edu	37	chr8	139712300	139712300	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccaggccacactggaCattgccctccaggccgaggc	12	17	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139712300	T	T	139712300	1	4	158	0	1	0	0	0	0	0	0	0	3713	493	17	4		4	COL22A1	8	139712300	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	103232	139712300	6651722	346	133258											
LYNX1	66004	broad.mit.edu	37	chr8	143857447	143857447	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggatccaactcaggtggCgcacagaggatccaactcag	11	13	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143857447	A	A	143857447	1	1	158	0	1	0	0	0	0	0	0	0	9196	783	27	3		3	LYNX1	8	143857447	5'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	4145147	143857447	2506575	347	133259											
ZC3H3	23144	broad.mit.edu	37	chr8	144621365	144621365	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagagtagcccctccggcTtggacgagggtagcgggcac	17	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144621365	A	A	144621365	3	1	158	1	0	0	0	0	1	0	0	0	17695	1609	56	5	2718	5	ZC3H3	8	144621365	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	763918	144621365	1742657	348	133260											
LRRC14	9684	broad.mit.edu	37	chr8	145746223	145746223	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtgagcgggccccaccActgccctgcccctcccttct	9	20	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145746223	G	G	145746223	1	3	158	0	1	0	0	0	0	0	0	0	9055	174	6	5		5	LRRC14	8	145746223	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1124858	145746223	617799	349	133261											
DOCK8	81704	broad.mit.edu	37	chr9	441464	441464	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgttacctggtggcaggcGaccctgtcctacagatgctt	11	12	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	441464	T	T	441464	1	4	158	0	1	0	0	0	0	0	0	0	4733	1073	37	3		3	DOCK8	9	441464	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08		441464	140771967	350	133262											
KLHL9	55958	broad.mit.edu	37	chr9	21333334	21333334	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcttagaacatcatcatAatcacttgttcctctgaagt	5	10	4	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21333334	G	G	21333334	3	3	158	1	0	0	0	0	1	0	0	0	8467	362	13	5	332	5	KLHL9	9	21333334	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	20891870	21333334	119880097	351	133263											
FRMPD1	22844	broad.mit.edu	37	chr9	37745436	37745436	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taggaaggattcaggtgactCcccgggtgatgtgtcaaata	13	7	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37745436	T	T	37745436	3	4	158	1	0	0	0	0	1	0	0	0	6117	855	30	4	3465	4	FRMPD1	9	37745436	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	16412102	37745436	103467995	352	133264											
PGM5	5239	broad.mit.edu	37	chr9	71007064	71007064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgtgtcaagattctgGgcccttggtactcagagatt	12	9	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71007064	T	T	71007064	1	4	158	0	1	0	0	0	0	0	0	0	11896	1247	43	2		2	PGM5	9	71007064	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	33261628	71007064	70206367	353	133265											
TSTD2	158427	broad.mit.edu	37	chr9	100367687	100367687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggagtactgggggcagCggacagctccacgtaagctg	18	9	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100367687	A	A	100367687	1	1	158	0	1	0	0	0	0	0	0	0	16801	783	27	3		3	TSTD2	9	100367687	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	29360623	100367687	40845744	354	133266											
COL15A1	1306	broad.mit.edu	37	chr9	101809893	101809893	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcttctagctgagagcGgagaggctggagacaaggag	18	6	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101809893	C	C	101809893	1	2	158	0	1	0	0	0	0	0	0	0	3704	1131	39	4		4	COL15A1	9	101809893	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1442206	101809893	39403538	355	133267											
SLC44A1	23446	broad.mit.edu	37	chr9	108071980	108071980	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgaaatggtttatttgtAtgtttttttctgtttctttc	6	3	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108071980	T	T	108071980	1	4	158	0	1	0	0	0	0	0	0	0	14749	464	16	5		5	SLC44A1	9	108071980	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	6262087	108071980	33141451	356	133268											
ZNF883	169834	broad.mit.edu	37	chr9	115759674	115759674	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacattgatagggtttcacaCaagaatgaatttttagatgt	8	4	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115759674	T	T	115759674	3	4	158	1	0	0	0	0	1	0	0	0	18327	478	17	4	275	4	ZNF883	9	115759674	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	7687694	115759674	25453757	357	133269											
COL27A1	85301	broad.mit.edu	37	chr9	117015255	117015255	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaagctcaaaccactgtcaGataagggttaggtggctggg	13	8	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117015255	T	T	117015255	1	4	158	0	1	0	0	0	0	0	0	0	3717	957	33	3		3	COL27A1	9	117015255	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1255581	117015255	24198176	358	133270											
OR1J4	26219	broad.mit.edu	37	chr9	125281945	125281945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgacaacaccatccccCatttcttctgtgatcttgtt	6	13	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125281945	A	A	125281945	3	1	158	1	0	0	0	0	1	0	0	0	11055	594	21	2	528	2	OR1J4	9	125281945	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	8266690	125281945	15931486	359	133271											
OR1N2	138882	broad.mit.edu	37	chr9	125316138	125316138	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcactgttcccctcctgctGatcgtcttctcctatgtccg	6	17	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125316138	A	A	125316138	2	1	158	1	0	0	0	0	0	0	0	1	11064	1277	45	4		4	OR1N2	9	125316138	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	34193	125316138	15897293	360	133272											
RABGAP1	23637	broad.mit.edu	37	chr9	125752205	125752205	+	Intron	DEL	G	-	-													tttataggcctaacaaattaGgtaatttaccaaaagaaata							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125752205	-	-	125752205	6	5	158	0	1	1	0	1	0	0	0	0	13072	1015	35	0		0	RABGAP1	9	125752205	Intron	DEL	G	TCGA-50-5931-01A-11D-1753-08	436067	125752205	15461226	361	133273											
NUP188	23511	broad.mit.edu	37	chr9	131749115	131749115	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttggagctgattcatgCgatactgaacctgtgccacg	11	10	2	2	rs148207291		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131749115	T	T	131749115	3	4	158	1	0	0	0	0	1	0	0	0	10853	768	27	4	2311	4	NUP188	9	131749115	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	5996910	131749115	9464316	362	133274											
BAT2L1	84726	broad.mit.edu	37	chr9	134351524	134351524	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggagccccacctgctggcAggtcagtggccaggcaggcc	16	14	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134351524	G	G	134351524	2	3	158	1	0	0	0	0	0	0	0	1	1325	175	7	5		5	BAT2L1	9	134351524	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	2602409	134351524	6861907	363	133275											
DNLZ	728489	broad.mit.edu	37	chr9	139257632	139257632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggccgccacgcccctccCgggaagacccgcccctctag	12	20	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139257632	A	A	139257632	1	1	158	0	1	0	0	0	0	0	0	0	4709	667	23	1		1	DNLZ	9	139257632	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	4906108	139257632	1955799	364	133276											
NOTCH1	4851	broad.mit.edu	37	chr9	139413252	139413252	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcatcagctggcactcgTccacatcctcggtacagtac	9	14	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139413252	C	C	139413252	3	2	158	1	0	0	0	0	1	0	0	0	10642	1667	58	5	6893	5	NOTCH1	9	139413252	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	155620	139413252	1800179	365	133277											
ZMYND11	10771	broad.mit.edu	37	chr10	267423	267423	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagggtgggggttatctaAtgaaatgatgatactcataa	13	3	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	267423	T	T	267423	1	4	158	0	1	0	0	0	0	0	0	0	17832	116	4	5		5	ZMYND11	10	267423	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08		267423	135267324	366	133278											
GDI2	2665	broad.mit.edu	37	chr10	5815929	5815929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatttttaaaatcccaatTaataatatatagttgtttca	2	4	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5815929	A	A	5815929	1	1	158	0	1	0	0	0	0	0	0	0	6385	1769	61	5		5	GDI2	10	5815929	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5548506	5815929	129718818	367	133279											
MCM10	55388	broad.mit.edu	37	chr10	13214901	13214901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaagtttcttgggaatGgaagccacatgatatatttt	9	4	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13214901	T	T	13214901	1	4	158	0	1	0	0	0	0	0	0	0	9478	1363	47	2		2	MCM10	10	13214901	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	7398972	13214901	122319846	368	133280											
VIM	7431	broad.mit.edu	37	chr10	17271973	17271973	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggccgaggacatcatgcgCctccgggagaagtaaggctg	15	11	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17271973	T	T	17271973	2	4	158	1	0	0	0	0	0	0	0	1	17293	726	26	4		4	VIM	10	17271973	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	4057072	17271973	118262774	369	133281											
ARMC3	219681	broad.mit.edu	37	chr10	23290868	23290868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagaaattctggtggattGgagcccctggtagagctgct	13	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23290868	T	T	23290868	3	4	158	1	0	0	0	0	1	0	0	0	956	1339	47	2	1488	2	ARMC3	10	23290868	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	6018895	23290868	112243879	370	133282											
APBB1IP	54518	broad.mit.edu	37	chr10	26789819	26789819	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagcagacataagtgagGctgagcagaggacaatccag	14	7	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26789819	T	T	26789819	3	4	158	1	0	0	0	0	1	0	0	0	762	1203	42	3	242	3	APBB1IP	10	26789819	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	3498951	26789819	108744928	371	133283											
ANKRD26	22852	broad.mit.edu	37	chr10	27388876	27388876	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcctgggcgctggagccCtgcaaggtgtcaccgtccca	15	15	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27388876	A	A	27388876	1	1	158	0	1	0	0	0	0	0	0	0	654	696	24	2		2	ANKRD26	10	27388876	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	599057	27388876	108145871	372	133284											
GDF2	2658	broad.mit.edu	37	chr10	48416263	48416263	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcttgaagagcctcctAtggccagtggcctccaccct	11	14	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48416263	C	C	48416263	1	2	158	0	1	0	0	0	0	0	0	0	6378	464	16	5		5	GDF2	10	48416263	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	21027387	48416263	87118484	373	133285											
PLAC9	219348	broad.mit.edu	37	chr10	81903952	81903952	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtggaaccacttctgtccTcgactttaccccacttccca	5	17	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81903952	A	A	81903952	1	1	158	0	1	0	0	0	0	0	0	0	12112	1566	54	5		5	PLAC9	10	81903952	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	33487689	81903952	53630795	374	133286											
NRG3	10718	broad.mit.edu	37	chr10	84498383	84498383	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatcaatttctgccgaaaaCtgattccatcttatcggatc	6	10	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84498383	G	G	84498383	3	3	158	1	0	0	0	0	1	0	0	0	10744	565	20	4	1182	4	NRG3	10	84498383	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2594431	84498383	51036364	375	133287											
CDHR1	92211	broad.mit.edu	37	chr10	85972245	85972245	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggcataagaatttcattGaagataaaattttttggctt	8	3	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85972245	T	T	85972245	1	4	158	0	1	0	0	0	0	0	0	0	3148	1305	45	3		3	CDHR1	10	85972245	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1473862	85972245	49562502	376	133288											
FAM190B	54462	broad.mit.edu	37	chr10	86131530	86131530	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accttcatctataaccagatCacattcctttaatagagctg	4	11	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86131530	A	A	86131530	4	1	158	1	0	0	0	0	0	1	0	0	5569	838	29	3	724	3	FAM190B	10	86131530	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	159285	86131530	49403217	377	133289											
WAPAL	23063	broad.mit.edu	37	chr10	88221029	88221029	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagggataataatgtctccaTagctaaatgcccagtctaaa	7	8	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88221029	A	A	88221029	3	1	158	1	0	0	0	0	1	0	0	0	17375	1406	49	5	1226	5	WAPAL	10	88221029	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	2089499	88221029	47313718	378	133290											
NOC3L	64318	broad.mit.edu	37	chr10	96108914	96108914	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcttgaatactttttactTcatacacttataaggaataa	5	6	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96108914	G	G	96108914	1	3	158	0	1	0	0	0	0	0	0	0	10609	1798	62	5		5	NOC3L	10	96108914	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	7887885	96108914	39425833	379	133291											
ATRNL1	26033	broad.mit.edu	37	chr10	117059779	117059779	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagtagtccagtaaattagCattcctttaaaagtatgttt	6	5	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117059779	T	T	117059779	1	4	158	0	1	0	0	0	0	0	0	0	1211	725	25	4		4	ATRNL1	10	117059779	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	20950865	117059779	18474968	380	133292											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118225441	118225441	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacaatatccaagcctagaCaaaaggtctggccctcccaa	7	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118225441	G	G	118225441	1	3	158	0	1	0	0	0	0	0	0	0	12247	493	17	4		4	PNLIPRP3	10	118225441	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1165662	118225441	17309306	381	133293											
C10orf84	63877	broad.mit.edu	37	chr10	120070333	120070333	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattctcagtaaattgagcaTttgagtctacaaatgtcttg	7	7	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120070333	A	A	120070333	1	1	158	0	1	0	0	0	0	0	0	0	1632	1508	52	5		5	C10orf84	10	120070333	3'UTR	SNP	T	TCGA-50-5931-01A-11D-1753-08	1844892	120070333	15464414	382	133294											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122334829	122334830	+	Intron	DNP	GG	TT	TT													gcaaggtgagtccctgcccaGggcctgactagtcctcactg							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	122334830	TT	TT	122334829	1	4	158	0	1	0	0	0	0	0	0	0	12389	1015	35	2		2	PPAPDC1A	10	122334829	Intron	DNP	GG	TCGA-50-5931-01A-11D-1753-08	2264496	122334829	13199918	383	133295											
DMBT1	1755	broad.mit.edu	37	chr10	124358481	124358481	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggaaatgcccggtttggtCagggctcaggacccattgtc	13	11	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124358481	A	A	124358481	3	1	158	1	0	0	0	0	1	0	0	0	4617	827	29	3	3250	3	DMBT1	10	124358481	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2023652	124358481	11176266	384	133296											
CTBP2	1488	broad.mit.edu	37	chr10	126715738	126715738	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcacctccgccccataCctggtgtcgggctgctcccg	12	18	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126715738	T	T	126715738	1	4	158	0	1	0	0	0	0	0	0	0	4032	506	18	4		4	CTBP2	10	126715738	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2357257	126715738	8819009	385	133297											
ADAM12	8038	broad.mit.edu	37	chr10	127755307	127755307	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagtcttcacagcacagCccatgtgcgcacacagcgtc	10	15	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127755307	A	A	127755307	2	1	158	1	0	0	0	0	0	0	0	1	236	726	26	3		3	ADAM12	10	127755307	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	1039569	127755307	7779440	386	133298											
PPP2R2D	55844	broad.mit.edu	37	chr10	133758916	133758916	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtagcaaagggaccatccGcctgtgtgacatgcgctcct	11	13	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133758916	A	A	133758916	3	1	158	1	0	0	0	0	1	0	0	0	12488	1087	38	4	693	4	PPP2R2D	10	133758916	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	6003609	133758916	1775831	387	133299											
OR51F1	256892	broad.mit.edu	37	chr11	4790455	4790455	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgccattcttcaggggaGgcaattctgaggacagagtg	14	7	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4790455	A	A	4790455	2	1	158	1	0	0	0	0	0	0	0	1	11190	987	35	4		4	OR51F1	11	4790455	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08		4790455	130216061	388	133300											
OR52R1	119695	broad.mit.edu	37	chr11	4825433	4825433	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaaagaggtacatgggctCatgcagggtgtggtcaattc	14	7	2	2	rs76140227	byFrequency;by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4825433	A	A	4825433	4	1	158	1	0	0	0	0	0	1	0	0	11225	835	29	3	772	3	OR52R1	11	4825433	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	34978	4825433	130181083	389	133301											
OR51T1	401665	broad.mit.edu	37	chr11	4904111	4904111	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttaggggaagatgggatTgaaggtaggaaattgtcagg	17	2	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4904111	A	A	4904111	1	1	158	0	1	0	0	0	0	0	0	0	11200	1826	63	5		5	OR51T1	11	4904111	3'UTR	SNP	T	TCGA-50-5931-01A-11D-1753-08	78678	4904111	130102405	390	133302											
OR2D3	120775	broad.mit.edu	37	chr11	6942637	6942637	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgctggcagtgatgtcCtatgaccggtatgtggctgt	15	9	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6942637	A	A	6942637	2	1	158	1	0	0	0	0	0	0	0	1	11089	668	24	2		2	OR2D3	11	6942637	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	2038526	6942637	128063879	391	133303											
ZNF215	7762	broad.mit.edu	37	chr11	6977310	6977310	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagtttgagtacagatattCgacaccaaaaaagtcatact	7	7	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6977310	T	T	6977310	4	4	158	1	0	0	0	0	0	1	0	0	17897	876	31	4	1120	4	ZNF215	11	6977310	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	34673	6977310	128029206	392	133304											
ZNF214	7761	broad.mit.edu	37	chr11	7024067	7024067	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttcaaatgttactgccatCtggtcaaagatcaggctttc	7	10	5	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7024067	A	A	7024067	1	1	158	0	1	0	0	0	0	0	0	0	17896	928	32	3		3	ZNF214	11	7024067	5'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	46757	7024067	127982449	393	133305											
ADM	133	broad.mit.edu	37	chr11	10327535	10327536	+	Silent	DNP	GC	TA	TA													agtcgtgggaagagggaactGcggatgtccagcagctaccc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	10327536	TA	TA	10327535	2	4	158	1	0	0	0	0	0	0	0	1	321	1306	46	3		3	ADM	11	10327535	Silent	DNP	GC	TCGA-50-5931-01A-11D-1753-08	3303468	10327535	124678981	394	133306											
MICAL2	9645	broad.mit.edu	37	chr11	12263846	12263846	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcctgagcagaccttggaGagccagagccaagtctgacc	13	12	1	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12263846	A	A	12263846	3	1	158	1	0	0	0	0	1	0	0	0	9663	942	33	4	2489	4	MICAL2	11	12263846	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1936311	12263846	122742670	395	133307											
MICAL2	9645	broad.mit.edu	37	chr11	12264342	12264342	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacatggggctttcagagcCcccaggaacctgatgctgga	12	11	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12264342	T	T	12264342	1	4	158	0	1	0	0	0	0	0	0	0	9663	638	22	4		4	MICAL2	11	12264342	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	496	12264342	122742174	396	133308											
PARVA	55742	broad.mit.edu	37	chr11	12518121	12518121	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccctgaaacttcctcccAggagcatcaagtggaatgtg	9	11	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12518121	G	G	12518121	3	3	158	1	0	0	0	0	1	0	0	0	11562	179	7	5	535	5	PARVA	11	12518121	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	253779	12518121	122488395	397	133309											
SPTY2D1	144108	broad.mit.edu	37	chr11	18655719	18655719	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggaagactagggtcccctAcattgatgccccagctgcta	10	12	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18655719	T	T	18655719	1	4	158	0	1	0	0	0	0	0	0	0	15244	406	14	5		5	SPTY2D1	11	18655719	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	6137598	18655719	116350797	398	133310											
IGSF22	283284	broad.mit.edu	37	chr11	18731191	18731191	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggaaatgctggagttggagGaatcagatacatgcaggtcc	15	6	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18731191	C	C	18731191	3	2	158	1	0	0	0	0	1	0	0	0	7670	1174	41	4	1263	4	IGSF22	11	18731191	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	75472	18731191	116275325	399	133311											
NDUFS3	4722	broad.mit.edu	37	chr11	47603679	47603679	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcgcttcaactcacggAtccgtgtgaagacctacaca	8	14	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47603679	G	G	47603679	3	3	158	1	0	0	0	0	1	0	0	0	10388	333	12	5	439	5	NDUFS3	11	47603679	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	28872488	47603679	87402837	400	133312											
FOLH1	2346	broad.mit.edu	37	chr11	49204782	49204782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctctgcaattccacgcCtataagcatattctgaaaaa	5	12	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49204782	A	A	49204782	3	1	158	1	0	0	0	0	1	0	0	0	6037	681	24	2	1465	2	FOLH1	11	49204782	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1601103	49204782	85801734	401	133313											
TRIM48	79097	broad.mit.edu	37	chr11	55038377	55038378	+	3'UTR	DNP	CC	AT	AT													ctaattgctccttctcacttCctctcagacctatctttttc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	55038378	AT	AT	55038377	1	1	158	0	1	0	0	0	0	0	0	0	16648	870	30	3		3	TRIM48	11	55038377	3'UTR	DNP	CC	TCGA-50-5931-01A-11D-1753-08	5833595	55038377	79968139	402	133314											
OR5AS1	219447	broad.mit.edu	37	chr11	55798274	55798274	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccgctatgcagccatctGcaacccactgctctatacta	6	15	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55798274	A	A	55798274	3	1	158	1	0	0	0	0	1	0	0	0	11240	1319	46	4	382	4	OR5AS1	11	55798274	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	759897	55798274	79208242	403	133315											
OR8J3	81168	broad.mit.edu	37	chr11	55904560	55904560	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataagatactagaactgtaAtcatggaaaaaaccaaattt	5	5	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904560	T	T	55904560	3	4	158	1	0	0	0	0	1	0	0	0	11336	101	4	5	314	5	OR8J3	11	55904560	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	106286	55904560	79101956	404	133316											
PLAC1L	219990	broad.mit.edu	37	chr11	59812289	59812289	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttggaatgttttagcttTacctttgcttatgagaagct	8	7	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59812289	C	C	59812289	1	2	158	0	1	0	0	0	0	0	0	0	12108	1769	61	5		5	PLAC1L	11	59812289	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	3907729	59812289	75194227	405	133317											
MS4A1	931	broad.mit.edu	37	chr11	60231890	60231890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcggttaaaaactgagaccCttaaaaagccaaggtatcac	7	9	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60231890	A	A	60231890	1	1	158	0	1	0	0	0	0	0	0	0	9948	696	24	2		2	MS4A1	11	60231890	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	419601	60231890	74774626	406	133318											
SLC22A25	387601	broad.mit.edu	37	chr11	62985020	62985020	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcaatgtcaaagccaaggCttggaaaatgtggatcgaaa	10	7	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62985020	T	T	62985020	1	4	158	0	1	0	0	0	0	0	0	0	14568	812	28	4		4	SLC22A25	11	62985020	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2753130	62985020	72021496	407	133319											
COX8A	1351	broad.mit.edu	37	chr11	63743756	63743764	+	In_Frame_Del	DEL	CCTGTCACA	-	-													ctcctgccagcgggctggatCctgtcacacctggagaccta					rs11550240		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63743764	-	-	63743756	7	5	158	1	0	1	0	1	0	0	0	0	3817	845	30	0	180	0	COX8A	11	63743756	In_Frame_Del	DEL	CCTGTCACA	TCGA-50-5931-01A-11D-1753-08	758736	63743756	71262760	408	133320											
NPAS4	266743	broad.mit.edu	37	chr11	66191875	66191875	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaccagttgactccctgcaCctccaccttcccagaccagc	6	19	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66191875	T	T	66191875	3	4	158	1	0	0	0	0	1	0	0	0	10660	507	18	4	1540	4	NPAS4	11	66191875	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2448119	66191875	68814641	409	133321											
SPTBN2	6712	broad.mit.edu	37	chr11	66455339	66455339	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacttgcaggggaactcacCggcccttcggggaagctgct	13	13	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66455339	A	A	66455339	2	1	158	1	0	0	0	0	0	0	0	1	15238	666	23	1		1	SPTBN2	11	66455339	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	263464	66455339	68551177	410	133322											
PTPRCAP	5790	broad.mit.edu	37	chr11	67203241	67203241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggccctggcccccagctGccctggcgctgtcatcccag	13	18	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67203241	T	T	67203241	3	4	158	1	0	0	0	0	1	0	0	0	12906	1319	46	3	40	3	PTPRCAP	11	67203241	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	747902	67203241	67803275	411	133323											
CABP4	57010	broad.mit.edu	37	chr11	67222849	67222849	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatgggtcctgaaagccaaGggtgcccaggggtgtggtgt	17	7	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67222849	A	A	67222849	1	1	158	0	1	0	0	0	0	0	0	0	2559	1015	35	4		4	CABP4	11	67222849	5'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	19608	67222849	67783667	412	133324											
CLPB	81570	broad.mit.edu	37	chr11	72145612	72145612	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcgaagacgccgcgaacaGggtggagttgcgcactacct	14	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72145612	T	T	72145612	1	4	158	0	1	0	0	0	0	0	0	0	3583	1015	35	2		2	CLPB	11	72145612	5'Flank	SNP	G	TCGA-50-5931-01A-11D-1753-08	4922763	72145612	62860904	413	133325											
GRM5	2915	broad.mit.edu	37	chr11	88780709	88780709	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagggaatctcttatgaacTcaatgctctgctctagggcc	10	10	4	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88780709	A	A	88780709	3	1	158	1	0	0	0	0	1	0	0	0	6866	1551	54	5	3342	5	GRM5	11	88780709	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	16635097	88780709	46225807	414	133326											
NAALAD2	10003	broad.mit.edu	37	chr11	89868067	89868067	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgattctctgcagagataaAgggagaaatcctggagctgg	14	6	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89868067	G	G	89868067	1	3	158	0	1	0	0	0	0	0	0	0	10222	87	3	5		5	NAALAD2	11	89868067	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1087358	89868067	45138449	415	133327											
FAT3	120114	broad.mit.edu	37	chr11	92088374	92088374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttgaggtggaagtggtGgatgtcaatgaaaacctcca	13	5	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92088374	T	T	92088374	2	4	158	1	0	0	0	0	0	0	0	1	5748	1335	47	2		2	FAT3	11	92088374	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	2220307	92088374	42918142	416	133328											
HEPHL1	341208	broad.mit.edu	37	chr11	93837701	93837701	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcttccaggatacgtAtagtggtttgatgggtcctc	10	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93837701	G	G	93837701	3	3	158	1	0	0	0	0	1	0	0	0	7122	449	16	5	2752	5	HEPHL1	11	93837701	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	1749327	93837701	41168815	417	133329											
CNTN5	53942	broad.mit.edu	37	chr11	100061936	100061936	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagtacgtttgccgaggGgaaaacgtctttggttctgc	14	7	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100061936	A	A	100061936	2	1	158	1	0	0	0	0	0	0	0	1	3676	1219	43	4		4	CNTN5	11	100061936	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	6224235	100061936	34944580	418	133330											
GRIA4	2893	broad.mit.edu	37	chr11	105482975	105482975	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgacaagaggaaacagtgAatgtgcttttcctgctgttt	11	6	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105482975	C	C	105482975	1	2	158	0	1	0	0	0	0	0	0	0	6836	261	9	5		5	GRIA4	11	105482975	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	5421039	105482975	29523541	419	133331											
FDX1	2230	broad.mit.edu	37	chr11	110327794	110327794	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatttttggactgcttcaAttgtaataataatctgggaa	8	4	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110327794	G	G	110327794	1	3	158	0	1	0	0	0	0	0	0	0	5861	116	4	5		5	FDX1	11	110327794	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	4844819	110327794	24678722	420	133332											
ZW10	9183	broad.mit.edu	37	chr11	113644417	113644417	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggaaccaacgctgactggGtcactctcgtagccagcgcc	12	15	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113644417	C	C	113644417	1	2	158	0	1	0	0	0	0	0	0	0	18376	1276	44	4		4	ZW10	11	113644417	5'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	3316623	113644417	21362099	421	133333											
CEP164	22897	broad.mit.edu	37	chr11	117262840	117262840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccccatgcttcccttgacCctgatctcgagggcttgggg	11	14	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117262840	A	A	117262840	1	1	158	0	1	0	0	0	0	0	0	0	3279	638	22	2		2	CEP164	11	117262840	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	3618423	117262840	17743676	422	133334											
FEZ1	9638	broad.mit.edu	37	chr11	125351416	125351416	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccctgctaaaccaggggCcccggagaggtacctcagtg	13	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125351416	A	A	125351416	1	1	158	0	1	0	0	0	0	0	0	0	5880	754	26	3		3	FEZ1	11	125351416	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	8088576	125351416	9655100	423	133335											
FLI1	2313	broad.mit.edu	37	chr11	128564201	128564201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcaacggacgcgggcggCggggaccggccggggaggcg	25	11	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128564201	A	A	128564201	1	1	158	0	1	0	0	0	0	0	0	0	5981	783	27	3		3	FLI1	11	128564201	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	3212785	128564201	6442315	424	133336											
NTM	50863	broad.mit.edu	37	chr11	132081940	132081940	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccaaaattgtagagatttCttcagatatctccattaatg	5	8	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132081940	T	T	132081940	3	4	158	1	0	0	0	0	1	0	0	0	10794	913	32	4	521	4	NTM	11	132081940	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	3517739	132081940	2924576	425	133337											
NCAPD3	23310	broad.mit.edu	37	chr11	134038592	134038592	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcctaaaagctgcatgccAaagactccagtgcactacag	7	13	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134038592	G	G	134038592	1	3	158	0	1	0	0	0	0	0	0	0	10301	145	5	5		5	NCAPD3	11	134038592	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1956652	134038592	967924	426	133338											
AKAP3	10566	broad.mit.edu	37	chr12	4737626	4737626	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acatttgttttcagagccatCgatcttctcattgatctctt	5	10	4	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4737626	T	T	4737626	3	4	158	1	0	0	0	0	1	0	0	0	452	884	31	4	2127	4	AKAP3	12	4737626	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08		4737626	129114269	427	133339											
NECAP1	25977	broad.mit.edu	37	chr12	8248380	8248380	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgaaatctttgatctggaGaagcaatggatatgcaggtc	11	5	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8248380	A	A	8248380	1	1	158	0	1	0	0	0	0	0	0	0	10402	957	33	4		4	NECAP1	12	8248380	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	3510754	8248380	125603515	428	133340											
AICDA	57379	broad.mit.edu	37	chr12	8757733	8757733	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcccctcgagcttccCcactaactcattcattccgc	3	19	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8757733	T	T	8757733	1	4	158	0	1	0	0	0	0	0	0	0	422	638	22	4		4	AICDA	12	8757733	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	509353	8757733	125094162	429	133341											
GRIN2B	2904	broad.mit.edu	37	chr12	13717085	13717085	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagctggctgtgcttggaGgaggggaggccgatgtccag	19	8	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13717085	A	A	13717085	2	1	158	1	0	0	0	0	0	0	0	1	6846	987	35	4		4	GRIN2B	12	13717085	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	4959352	13717085	120134810	430	133342											
PLCZ1	89869	broad.mit.edu	37	chr12	18836325	18836325	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtctccaatagccttgCtgagaaacaagagctcttta	9	9	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18836325	T	T	18836325	1	4	158	0	1	0	0	0	0	0	0	0	12139	812	28	4		4	PLCZ1	12	18836325	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	5119240	18836325	115015570	431	133343											
SLCO1B3	28234	broad.mit.edu	37	chr12	21028140	21028140	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtatttcaaaacgatttttGactggcttcttttaactgtt	6	6	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21028140	T	T	21028140	1	4	158	0	1	0	0	0	0	0	0	0	14838	1305	45	3		3	SLCO1B3	12	21028140	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2191815	21028140	112823755	432	133344											
ABCC9	10060	broad.mit.edu	37	chr12	22068533	22068533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggctcactgcaagctctGcctcccaggttcatgccaac	8	17	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22068533	T	T	22068533	1	4	158	0	1	0	0	0	0	0	0	0	59	1334	46	3		3	ABCC9	12	22068533	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1040393	22068533	111783362	433	133345											
CMAS	55907	broad.mit.edu	37	chr12	22213924	22213924	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taattatatttctagatactGatttctgatacttcagacat	4	6	3	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22213924	T	T	22213924	1	4	158	0	1	0	0	0	0	0	0	0	3607	1305	45	3		3	CMAS	12	22213924	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	145391	22213924	111637971	434	133346											
SLC2A13	114134	broad.mit.edu	37	chr12	40441975	40441975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaattgggtggtgagacCtccgcaatgtacactggcac	11	10	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40441975	A	A	40441975	3	1	158	1	0	0	0	0	1	0	0	0	14656	680	24	2	1388	2	SLC2A13	12	40441975	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	18228051	40441975	93409920	435	133347											
ARID2	196528	broad.mit.edu	37	chr12	46230616	46230616	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggacagcgggtacttcagAttgcagtgattttgagaaat	12	5	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46230616	G	G	46230616	3	3	158	1	0	0	0	0	1	0	0	0	917	333	12	5	895	5	ARID2	12	46230616	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	5788641	46230616	87621279	436	133348											
MLL2	8085	broad.mit.edu	37	chr12	49432983	49432983	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcccccttggtttacccccAgggaacctcctggagcctca	8	17	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49432983	C	C	49432983	1	2	158	0	1	0	0	0	0	0	0	0	9714	203	7	5		5	MLL2	12	49432983	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	3202367	49432983	84418912	437	133349											
MLL2	8085	broad.mit.edu	37	chr12	49445464	49445465	+	Nonsense_Mutation	DNP	CC	AA	AA													cggtggggacaagggagattCctcaggcggtggagacaggc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	49445465	AA	AA	49445464	4	1	158	1	0	0	0	0	0	1	0	0	9714	864	30	3	14791	3	MLL2	12	49445464	Nonsense_Mutation	DNP	CC	TCGA-50-5931-01A-11D-1753-08	12481	49445464	84406431	438	133350											
GALNT6	11226	broad.mit.edu	37	chr12	51773084	51773084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgctacttactcaggtggtCgggtgtctggccccagggac	15	11	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51773084	A	A	51773084	3	1	158	1	0	0	0	0	1	0	0	0	6279	884	31	3	1426	3	GALNT6	12	51773084	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2327620	51773084	82078811	439	133351											
KRT84	3890	broad.mit.edu	37	chr12	52778630	52778630	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atctatcccaccatgcagctCgtcctctggcttggccttgc	8	16	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52778630	G	G	52778630	1	3	158	0	1	0	0	0	0	0	0	0	8569	899	31	4		4	KRT84	12	52778630	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1005546	52778630	81073265	440	133352											
KRT2	3849	broad.mit.edu	37	chr12	53044148	53044148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttataatcctccacaagatCctgcatgttattcagctctg	5	12	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53044148	A	A	53044148	3	1	158	1	0	0	0	0	1	0	0	0	8528	855	30	3	1176	3	KRT2	12	53044148	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	265518	53044148	80807747	441	133353											
SP7	121340	broad.mit.edu	37	chr12	53722249	53722249	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccgcagaagagccagttgCagacgaagggcctctcgcct	13	13	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53722249	G	G	53722249	3	3	158	1	0	0	0	0	1	0	0	0	15083	710	25	4	322	4	SP7	12	53722249	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	678101	53722249	80129646	442	133354											
MYO1A	4640	broad.mit.edu	37	chr12	57422590	57422590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttttttttgtagcgtagCttgctgttgtcaccacctgc	8	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57422590	A	A	57422590	3	1	158	1	0	0	0	0	1	0	0	0	10162	796	28	3	54	3	MYO1A	12	57422590	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	3700341	57422590	76429305	443	133355											
KIF5A	3798	broad.mit.edu	37	chr12	57960909	57960909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccatttgtcccccacagGgttgtactgaacgctttgtg	10	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57960909	T	T	57960909	3	4	158	1	0	0	0	0	1	0	0	0	8375	1246	43	2	528	2	KIF5A	12	57960909	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	538319	57960909	75890986	444	133356											
PIP4K2C	79837	broad.mit.edu	37	chr12	57989697	57989697	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttacccgaaacccccccagCgaaagtgaaggcagtgatgg	11	13	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57989697	T	T	57989697	2	4	158	1	0	0	0	0	0	0	0	1	12033	767	27	4		4	PIP4K2C	12	57989697	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	28788	57989697	75862198	445	133357											
PIP4K2C	79837	broad.mit.edu	37	chr12	57994654	57994654	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taggcatccacgacatcattCggggctctgaaccagaggag	12	11	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57994654	T	T	57994654	3	4	158	1	0	0	0	0	1	0	0	0	12033	875	31	4	904	4	PIP4K2C	12	57994654	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	4957	57994654	75857241	446	133358											
IRAK3	11213	broad.mit.edu	37	chr12	66638982	66638982	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggaatttctctgccaagctCttctgtttggcaggccggtg	12	11	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66638982	T	T	66638982	2	4	158	1	0	0	0	0	0	0	0	1	7894	900	32	4		4	IRAK3	12	66638982	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	8644328	66638982	67212913	447	133359											
CPSF6	11052	broad.mit.edu	37	chr12	69646789	69646789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgggataataaaaatcttGgttttattttaatggttaat	7	2	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69646789	T	T	69646789	1	4	158	0	1	0	0	0	0	0	0	0	3861	1363	47	2		2	CPSF6	12	69646789	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	3007807	69646789	64205106	448	133360											
TRHDE	29953	broad.mit.edu	37	chr12	72936110	72936110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggctaattttatgggcCattcagttttccagaggggt	12	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72936110	A	A	72936110	3	1	158	1	0	0	0	0	1	0	0	0	16603	594	21	2	1653	2	TRHDE	12	72936110	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	3289321	72936110	60915785	449	133361											
PPFIA2	8499	broad.mit.edu	37	chr12	81751934	81751934	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttagttgttctgtaatcaGactggctgtccactagggat	10	8	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81751934	A	A	81751934	3	1	158	1	0	0	0	0	1	0	0	0	12406	942	33	4	2141	4	PPFIA2	12	81751934	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	8815824	81751934	52099961	450	133362											
LRRIQ1	84125	broad.mit.edu	37	chr12	85449837	85449837	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatgataagggtgatatAgccaaaaatctagtggatga	10	4	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85449837	T	T	85449837	2	4	158	1	0	0	0	0	0	0	0	1	9116	410	15	5		5	LRRIQ1	12	85449837	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	3697903	85449837	48402058	451	133363											
EEA1	8411	broad.mit.edu	37	chr12	93246590	93246590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaagtctatcacaaatgCtttaacacactaaaatacta	4	8	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93246590	A	A	93246590	1	1	158	0	1	0	0	0	0	0	0	0	4961	812	28	3		3	EEA1	12	93246590	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	7796753	93246590	40605305	452	133364											
IKBIP	121457	broad.mit.edu	37	chr12	99019842	99019842	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcattttgcatctttaataTgctattatcatactgaattc	3	7	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99019842	C	C	99019842	1	2	158	0	1	0	0	0	0	0	0	0	7679	1464	51	5		5	IKBIP	12	99019842	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5773252	99019842	34832053	453	133365											
ANO4	121601	broad.mit.edu	37	chr12	101437438	101437438	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcaaactgtagcattttaGatgaattgaatttaacatac	5	5	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101437438	A	A	101437438	1	1	158	0	1	0	0	0	0	0	0	0	699	957	33	4		4	ANO4	12	101437438	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2417596	101437438	32414457	454	133366											
ANO4	121601	broad.mit.edu	37	chr12	101490494	101490494	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaggcactgactcgtggGgacagagaagccctccctta	12	11	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101490494	T	T	101490494	1	4	158	0	1	0	0	0	0	0	0	0	699	1247	43	2		2	ANO4	12	101490494	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	53056	101490494	32361401	455	133367											
SLC5A8	160728	broad.mit.edu	37	chr12	101581337	101581337	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaagacaactgtaatttcTgtcccaaagattaggaaacc	6	9	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101581337	A	A	101581337	1	1	158	0	1	0	0	0	0	0	0	0	14785	1595	55	5		5	SLC5A8	12	101581337	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	90843	101581337	32270558	456	133368											
MYBPC1	4604	broad.mit.edu	37	chr12	102038549	102038549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaaatggtataaaaatGgtcaagaaattcgacccagt	10	5	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102038549	T	T	102038549	3	4	158	1	0	0	0	0	1	0	0	0	10105	1348	47	2	986	2	MYBPC1	12	102038549	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	457212	102038549	31813346	457	133369											
UNG	7374	broad.mit.edu	37	chr12	109537159	109537159	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttttaaattagggacacTggagttaagccacagtccat	8	7	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109537159	A	A	109537159	1	1	158	0	1	0	0	0	0	0	0	0	17125	1595	55	5		5	UNG	12	109537159	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	7498610	109537159	24314736	458	133370											
MAP1LC3B2	643246	broad.mit.edu	37	chr12	117013722	117013722	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggaccctcgcgtcgtcGccgccgcggcccagatcccc	13	21	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117013722	T	T	117013722	1	4	158	0	1	0	0	0	0	0	0	0	9324	1102	38	3		3	MAP1LC3B2	12	117013722	5'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	7476563	117013722	16838173	459	133371											
FBXO21	23014	broad.mit.edu	37	chr12	117593773	117593773	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctagttaacacaggaggagCagtcagtccctgcagacccg	11	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117593773	G	G	117593773	1	3	158	0	1	0	0	0	0	0	0	0	5790	725	25	4		4	FBXO21	12	117593773	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	580051	117593773	16258122	460	133372											
GLT1D1	144423	broad.mit.edu	37	chr12	129429156	129429156	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacctcaaaggacatattcAggttaatcactgtgtcggtc	9	9	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129429156	T	T	129429156	1	4	158	0	1	0	0	0	0	0	0	0	6529	203	7	5		5	GLT1D1	12	129429156	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	11835383	129429156	4422739	461	133373											
SACS	26278	broad.mit.edu	37	chr13	23915110	23915110	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatagtagcttcatcactacTgtctattactgaaatagaaa	5	7	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23915110	A	A	23915110	3	1	158	1	0	0	0	0	1	0	0	0	13915	1580	55	5	10838	5	SACS	13	23915110	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08		23915110	91254768	462	133374											
C13orf33	84935	broad.mit.edu	37	chr13	31495960	31495960	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggagcagtttctctgaccGaaagttcagtgtaacttcca	9	9	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31495960	T	T	31495960	3	4	158	1	0	0	0	0	1	0	0	0	1740	1058	37	3	778	3	C13orf33	13	31495960	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	7580850	31495960	83673918	463	133375											
NBEA	26960	broad.mit.edu	37	chr13	36167465	36167465	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gattctgtttttttgcttagGaacctttcacaaccttcttc	5	10	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36167465	A	A	36167465	3	1	158	1	0	0	0	0	1	0	0	0	10281	1188	41	4	7363	4	NBEA	13	36167465	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	4671505	36167465	79002413	464	133376											
LMO7	4008	broad.mit.edu	37	chr13	76409483	76409483	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcagagttctgtgagtaTttggagaagtaggaagtact	12	5	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76409483	C	C	76409483	1	2	158	0	1	0	0	0	0	0	0	0	8929	1508	52	5		5	LMO7	13	76409483	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	40242018	76409483	38760395	465	133377											
POTEG	404785	broad.mit.edu	37	chr14	19553741	19553741	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgccactgcttcccctgcTgcagggggagcggcaagagc	15	14	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19553741	A	A	19553741	3	1	158	1	0	0	0	0	1	0	0	0	12362	1580	55	5	327	5	POTEG	14	19553741	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08		19553741	87795799	466	133378											
NDRG2	57447	broad.mit.edu	37	chr14	21490120	21490120	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctactcattctctcccAgaataaccactgccctccct	3	18	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21490120	G	G	21490120	1	3	158	0	1	0	0	0	0	0	0	0	10347	203	7	5		5	NDRG2	14	21490120	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1936379	21490120	85859420	467	133379											
SSTR1	6751	broad.mit.edu	37	chr14	38679067	38679067	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtggaccgctacgtggCcgtggtgcatcccatcaagg	14	13	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38679067	T	T	38679067	3	4	158	1	0	0	0	0	1	0	0	0	15315	739	26	4	475	4	SSTR1	14	38679067	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	17188947	38679067	68670473	468	133380											
MDGA2	161357	broad.mit.edu	37	chr14	47504196	47504196	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccccatatggaaatgcatAaaagggaatttacttacact	7	8	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47504196	G	G	47504196	1	3	158	0	1	0	0	0	0	0	0	0	9500	377	13	5		5	MDGA2	14	47504196	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	8825129	47504196	59845344	469	133381											
RTN1	6252	broad.mit.edu	37	chr14	60193880	60193880	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgccggcttggcgcacgctCctcggcccggacgccagtct	13	19	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60193880	A	A	60193880	4	1	158	1	0	0	0	0	0	1	0	0	13836	864	30	3	901	3	RTN1	14	60193880	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	12689684	60193880	47155660	470	133382											
SPTB	6710	broad.mit.edu	37	chr14	65289696	65289696	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttatccgggacctctcaaaGagcctggctgagctgttgtc	11	11	1	2	rs147811055		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65289696	T	T	65289696	2	4	158	1	0	0	0	0	0	0	0	1	15236	929	33	3		3	SPTB	14	65289696	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	5095816	65289696	42059844	471	133383											
ACOT4	122970	broad.mit.edu	37	chr14	74061971	74061971	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcctcgtggacattgtGgatataaggaatgctctcgt	12	8	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74061971	C	C	74061971	2	2	158	1	0	0	0	0	0	0	0	1	153	1335	47	4		4	ACOT4	14	74061971	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	8772275	74061971	33287569	472	133384											
TMEM90A	646658	broad.mit.edu	37	chr14	74876055	74876055	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctggtcatcctcCtggtcccgcagctcctcttg	7	18	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74876055	T	T	74876055	2	4	158	1	0	0	0	0	0	0	0	1	16341	680	24	4		4	TMEM90A	14	74876055	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	814084	74876055	32473485	473	133385											
PPP1R13B	23368	broad.mit.edu	37	chr14	104220591	104220591	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacgctgttcctaacaaaaGaaagaaaaatgtaactttga	6	6	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104220591	C	C	104220591	1	2	158	0	1	0	0	0	0	0	0	0	12458	957	33	4		4	PPP1R13B	14	104220591	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	29344536	104220591	3128949	474	133386											
KIAA0284	283638	broad.mit.edu	37	chr14	105350364	105350364	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacgaggacacaccccgaaaGaagcgctcccagtccttcac	9	16	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105350364	C	C	105350364	3	2	158	1	0	0	0	0	1	0	0	0	8236	933	33	4	1278	4	KIAA0284	14	105350364	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1129773	105350364	1999176	475	133387											
CYFIP1	23191	broad.mit.edu	37	chr15	22929910	22929910	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagaggtgagcacccacctCgcgcactgcgggccctcccg	12	18	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22929910	T	T	22929910	1	4	158	0	1	0	0	0	0	0	0	0	4170	899	31	4		4	CYFIP1	15	22929910	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08		22929910	79601482	476	133388											
C15orf2	23742	broad.mit.edu	37	chr15	24921226	24921226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcgtcgcccctaagaggcCgtgtcctctccctcgggctg	11	17	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921226	A	A	24921226	3	1	158	1	0	0	0	0	1	0	0	0	1797	652	23	1	214	1	C15orf2	15	24921226	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1991316	24921226	77610166	477	133389											
GABRA5	2558	broad.mit.edu	37	chr15	27159949	27159949	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatcttttatttttcaGcttgaccatctctgcagagt	5	10	5	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27159949	T	T	27159949	5	4	158	1	0	0	0	0	0	0	1	0	6224	985	34	3	515	3	GABRA5	15	27159949	Splice_Site	SNP	G	TCGA-50-5931-01A-11D-1753-08	2238723	27159949	75371443	478	133390											
HERC2	8924	broad.mit.edu	37	chr15	28473613	28473613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatacaagaataaacgtaaCgcagaaagcacgggcgatta	11	7	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28473613	A	A	28473613	1	1	158	0	1	0	0	0	0	0	0	0	7125	551	19	3		3	HERC2	15	28473613	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1313664	28473613	74057779	479	133391											
RYR3	6263	broad.mit.edu	37	chr15	33835899	33835899	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgataccatctacagaccaGaatgattcccagcacaggta	7	12	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33835899	T	T	33835899	3	4	158	1	0	0	0	0	1	0	0	0	13881	933	33	3	753	3	RYR3	15	33835899	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	5362286	33835899	68695493	480	133392											
RYR3	6263	broad.mit.edu	37	chr15	34130188	34130188	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttattgacaaatctttctGaacacatgccaaacgattcc	5	10	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34130188	A	A	34130188	3	1	158	1	0	0	0	0	1	0	0	0	13881	1291	45	4	12361	4	RYR3	15	34130188	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	294289	34130188	68401204	481	133393											
MGA	23269	broad.mit.edu	37	chr15	42005461	42005461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctagctttggagaagcGccaacctgctcactgccgcc	10	15	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42005461	T	T	42005461	3	4	158	1	0	0	0	0	1	0	0	0	9633	1087	38	3	3227	3	MGA	15	42005461	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	7875273	42005461	60525931	482	133394											
TGM5	9333	broad.mit.edu	37	chr15	43552773	43552773	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtctgtgagggccacttcTagccctgcaatggggcagcc	14	12	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43552773	C	C	43552773	2	2	158	1	0	0	0	0	0	0	0	1	15956	1509	53	5		5	TGM5	15	43552773	Silent	SNP	T	TCGA-50-5931-01A-11D-1753-08	1547312	43552773	58978619	483	133395											
CEP152	22995	broad.mit.edu	37	chr15	49030413	49030413	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttccatttttgttaataTattaatgattcttcttaaat	2	7	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49030413	C	C	49030413	1	2	158	0	1	0	0	0	0	0	0	0	3278	1421	49	5		5	CEP152	15	49030413	3'UTR	SNP	T	TCGA-50-5931-01A-11D-1753-08	5477640	49030413	53500979	484	133396											
ATP8B4	79895	broad.mit.edu	37	chr15	50154564	50154564	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgggtcagggaatgtcGtgcattacctatcaatcatt	9	9	4	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50154564	T	T	50154564	2	4	158	1	0	0	0	0	0	0	0	1	1201	1153	40	3		3	ATP8B4	15	50154564	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	1124151	50154564	52376828	485	133397											
ATP8B4	79895	broad.mit.edu	37	chr15	50158550	50158550	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgactcacttaccaacaaaTggaaactggtttgggaagat	9	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50158550	A	A	50158550	2	1	158	1	0	0	0	0	0	0	0	1	1201	1451	51	5		5	ATP8B4	15	50158550	Silent	SNP	T	TCGA-50-5931-01A-11D-1753-08	3986	50158550	52372842	486	133398											
NEDD4	4734	broad.mit.edu	37	chr15	56161820	56161820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattatcatcttctgagccaCtggttttaggtaaataagtc	7	8	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56161820	A	A	56161820	3	1	158	1	0	0	0	0	1	0	0	0	10405	565	20	3	2326	3	NEDD4	15	56161820	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	6003270	56161820	46369572	487	133399											
C15orf27	123591	broad.mit.edu	37	chr15	76496245	76496245	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccgcagctcagtcacCcgggcccagagtgacagcag	12	17	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76496245	T	T	76496245	2	4	158	1	0	0	0	0	0	0	0	1	1801	610	22	4		4	C15orf27	15	76496245	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	20334425	76496245	26035147	488	133400											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84558708	84558708	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcattagagtatattaaaAgctcccatgtggttctgtta	10	6	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84558708	G	G	84558708	1	3	158	0	1	0	0	0	0	0	0	0	276	87	3	5		5	ADAMTSL3	15	84558708	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	8062463	84558708	17972684	489	133401											
ZNF592	9640	broad.mit.edu	37	chr15	85325992	85325992	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccttgatgccaaggaggCcatccagacacccagtgagg	12	13	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85325992	T	T	85325992	3	4	158	1	0	0	0	0	1	0	0	0	18149	739	26	4	88	4	ZNF592	15	85325992	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	767284	85325992	17205400	490	133402											
IQGAP1	8826	broad.mit.edu	37	chr15	90969509	90969509	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagatacaaggtgagtccttCcttgctttgtgcttagattt	9	8	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90969509	T	T	90969509	1	4	158	0	1	0	0	0	0	0	0	0	7884	870	30	4		4	IQGAP1	15	90969509	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	5643517	90969509	11561883	491	133403											
FES	2242	broad.mit.edu	37	chr15	91435198	91435198	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacccctggtcacatatggAggcgccaaaaaatggaggac	11	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91435198	G	G	91435198	1	3	158	0	1	0	0	0	0	0	0	0	5877	319	11	5		5	FES	15	91435198	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	465689	91435198	11096194	492	133404											
ARRDC4	91947	broad.mit.edu	37	chr15	98513761	98513761	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgtttttgtagcagttAagaatcgagattaatttttg	8	3	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98513761	T	T	98513761	1	4	158	0	1	0	0	0	0	0	0	0	989	377	13	5		5	ARRDC4	15	98513761	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	7078563	98513761	4017631	493	133405											
PIGQ	9091	broad.mit.edu	37	chr16	629205	629205	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcagggttcgtggctggAggggctgactgcctccggcc	20	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	629205	G	G	629205	1	3	158	0	1	0	0	0	0	0	0	0	11991	319	11	5		5	PIGQ	16	629205	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08		629205	89725548	494	133406											
WDR90	197335	broad.mit.edu	37	chr16	716315	716315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgagtgaccaccagggcGccccaatctctaccatctgt	9	15	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	716315	T	T	716315	3	4	158	1	0	0	0	0	1	0	0	0	17464	1087	38	3	4851	3	WDR90	16	716315	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	87110	716315	89638438	495	133407											
TBC1D24	57465	broad.mit.edu	37	chr16	2569491	2569491	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggtgacccggacccttgtCtccccctggttggcaggctg	14	14	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2569491	G	G	2569491	1	3	158	0	1	0	0	0	0	0	0	0	15733	928	32	4		4	TBC1D24	16	2569491	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1853176	2569491	87785262	496	133408											
MEFV	4210	broad.mit.edu	37	chr16	3304798	3304798	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgtggaatattctggaagGacaaccagatgcaaaatgat	11	5	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3304798	A	A	3304798	1	1	158	0	1	0	0	0	0	0	0	0	9552	1189	41	4		4	MEFV	16	3304798	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	735307	3304798	87049955	497	133409											
NAT15	79903	broad.mit.edu	37	chr16	3533373	3533373	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccccaaggttccctcttActtgaaagtttaaaggatca	6	11	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3533373	T	T	3533373	3	4	158	1	0	0	0	0	1	0	0	0	10270	388	14	5	362	5	NAT15	16	3533373	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	228575	3533373	86821380	498	133410											
GRIN2A	2903	broad.mit.edu	37	chr16	9857220	9857220	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatagctgtcattcaccgccTgggatggcaacgagtgtttg	13	9	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9857220	A	A	9857220	3	1	158	1	0	0	0	0	1	0	0	0	6845	1580	55	5	217	5	GRIN2A	16	9857220	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	6323847	9857220	80497533	499	133411											
PDXDC1	23042	broad.mit.edu	37	chr16	15103631	15103631	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcaggtaggtagcatgatGctgaatctaccattttgaat	10	6	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15103631	A	A	15103631	1	1	158	0	1	0	0	0	0	0	0	0	11790	1334	46	4		4	PDXDC1	16	15103631	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	5246411	15103631	75251122	500	133412											
ABCC1	4363	broad.mit.edu	37	chr16	16161981	16161981	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgactctcactcggggcAcagcagtcagcactgggcgt	13	12	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16161981	G	G	16161981	1	3	158	0	1	0	0	0	0	0	0	0	49	174	6	5		5	ABCC1	16	16161981	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1058350	16161981	74192772	501	133413											
PDILT	204474	broad.mit.edu	37	chr16	20387379	20387380	+	Intron	DNP	GG	TT	TT													aaagcctcctcccacctcttGgtcccagtacctggaagaag							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	20387380	TT	TT	20387379	1	4	158	0	1	0	0	0	0	0	0	0	11768	1363	47	2		2	PDILT	16	20387379	Intron	DNP	GG	TCGA-50-5931-01A-11D-1753-08	4225398	20387379	69967374	502	133414											
ACSM5	54988	broad.mit.edu	37	chr16	20451223	20451223	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaaagggtgactgctccAtacaaataccccaggaaggt	11	9	0	2	rs112747866		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20451223	G	G	20451223	2	3	158	1	0	0	0	0	0	0	0	1	187	204	8	5		5	ACSM5	16	20451223	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	63844	20451223	69903530	503	133415											
ACSM2A	123876	broad.mit.edu	37	chr16	20487291	20487291	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagttcctgttttctgggaGattacattccagtgagattt	9	6	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20487291	T	T	20487291	1	4	158	0	1	0	0	0	0	0	0	0	183	957	33	3		3	ACSM2A	16	20487291	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	36068	20487291	69867462	504	133416											
ACSM2B	348158	broad.mit.edu	37	chr16	20548794	20548794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggctggagccacttcaGggtagccgccctgtgcaata	12	12	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20548794	T	T	20548794	1	4	158	0	1	0	0	0	0	0	0	0	184	1015	35	2		2	ACSM2B	16	20548794	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	61503	20548794	69805959	505	133417											
DNAH3	55567	broad.mit.edu	37	chr16	21031296	21031296	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggtctgggccagaagggcGactgatattggcagagtgcc	17	8	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21031296	T	T	21031296	1	4	158	0	1	0	0	0	0	0	0	0	4643	1073	37	3		3	DNAH3	16	21031296	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	482502	21031296	69323457	506	133418											
CHP2	63928	broad.mit.edu	37	chr16	23768667	23768667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagtgcccttggggattgGggagttgagatcaggagttc	17	6	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23768667	A	A	23768667	1	1	158	0	1	0	0	0	0	0	0	0	3398	1247	43	4		4	CHP2	16	23768667	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2737371	23768667	66586086	507	133419											
ATP2A1	487	broad.mit.edu	37	chr16	28915423	28915423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagcctccaggtaagtgCgtgcctgggagatgcacctg	14	11	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28915423	A	A	28915423	1	1	158	0	1	0	0	0	0	0	0	0	1140	783	27	3		3	ATP2A1	16	28915423	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	5146756	28915423	61439330	508	133420											
ITGAL	3683	broad.mit.edu	37	chr16	30486512	30486512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggcaccttcttgaaggGgaatggctgcagtgcttgga	15	8	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30486512	T	T	30486512	1	4	158	0	1	0	0	0	0	0	0	0	7956	1247	43	2		2	ITGAL	16	30486512	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1571089	30486512	59868241	509	133421											
ITGAX	3687	broad.mit.edu	37	chr16	31372509	31372509	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagatattcaaaaccaactGaaggagaagatctttgccat	7	7	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31372509	A	A	31372509	2	1	158	1	0	0	0	0	0	0	0	1	7959	1277	45	4		4	ITGAX	16	31372509	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	885997	31372509	58982244	510	133422											
ABCC12	94160	broad.mit.edu	37	chr16	48117616	48117616	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcctctagaatcagccGccaggacctctacaatctga	6	15	4	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48117616	T	T	48117616	1	4	158	0	1	0	0	0	0	0	0	0	52	1102	38	3		3	ABCC12	16	48117616	3'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	16745107	48117616	42237137	511	133423											
CES1	1066	broad.mit.edu	37	chr16	55867045	55867045	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtccagccctggagcCcagccccgcccagagttacc	11	18	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55867045	A	A	55867045	1	1	158	0	1	0	0	0	0	0	0	0	3299	638	22	2		2	CES1	16	55867045	5'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	7749429	55867045	34487708	512	133424											
CES7	221223	broad.mit.edu	37	chr16	55909017	55909017	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagtggaaaatcctcaccCaccccatcttctgagagccc	6	17	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55909017	T	T	55909017	1	4	158	0	1	0	0	0	0	0	0	0	3302	609	21	4		4	CES7	16	55909017	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	41972	55909017	34445736	513	133425											
MMP15	4324	broad.mit.edu	37	chr16	58073752	58073752	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccttggccctgcatccGctcactcatctcccacccac	6	21	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58073752	T	T	58073752	1	4	158	0	1	0	0	0	0	0	0	0	9747	1102	38	3		3	MMP15	16	58073752	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2164735	58073752	32281001	514	133426											
CDH8	1006	broad.mit.edu	37	chr16	61689397	61689397	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcaaaatgatgcatgctAatatggcaattaaggcgccc	9	9	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61689397	T	T	61689397	4	4	158	1	0	0	0	0	0	1	0	0	3146	372	13	5	524	5	CDH8	16	61689397	Nonsense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	3615645	61689397	28665356	515	133427											
CENPT	80152	broad.mit.edu	37	chr16	67864378	67864378	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccagtgtgaggcgtgcaGggcagggagtgatacacgtt	17	9	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67864378	A	A	67864378	2	1	158	1	0	0	0	0	0	0	0	1	3272	987	35	4		4	CENPT	16	67864378	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	6174981	67864378	22490375	516	133428											
CLEC18C	283971	broad.mit.edu	37	chr16	70013160	70013160	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actccaatgggcgtttcccaGgagggtggggttcagtttct	14	9	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70013160	A	A	70013160	1	1	158	0	1	0	0	0	0	0	0	0	3536	1015	35	4		4	CLEC18C	16	70013160	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2148782	70013160	20341593	517	133429											
LRRC50	123872	broad.mit.edu	37	chr16	84182725	84182725	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttcgcacacccaagagaaGacagggaagatcggggcccc	12	13	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84182725	A	A	84182725	3	1	158	1	0	0	0	0	1	0	0	0	9096	942	33	4	244	4	LRRC50	16	84182725	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	14169565	84182725	6172028	518	133430											
SPG7	6687	broad.mit.edu	37	chr16	89613071	89613071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggttctggcaggagagGcgggagatttttgagcagca	16	8	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89613071	T	T	89613071	3	4	158	1	0	0	0	0	1	0	0	0	15162	1194	42	3	1647	3	SPG7	16	89613071	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	5430346	89613071	741682	519	133431											
SLC13A5	284111	broad.mit.edu	37	chr17	6610448	6610448	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccagtaaatggccatgaGgatgatgacgtaggcacacc	12	10	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6610448	A	A	6610448	3	1	158	1	0	0	0	0	1	0	0	0	14508	1000	35	4	1620	4	SLC13A5	17	6610448	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08		6610448	74584762	520	133432											
TP53	7157	broad.mit.edu	37	chr17	7579414	7579414	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacagaagatgacaggggCcaggagggggctggtgcagg	22	6	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7579414	T	T	7579414	4	4	158	1	0	0	0	0	0	1	0	0	16505	740	26	4	1029	4	TP53	17	7579414	Nonsense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	968966	7579414	73615796	521	133433											
GAS7	8522	broad.mit.edu	37	chr17	9820438	9820438	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagctctctcccctctcCtcagtggcccaggagagagg	10	17	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9820438	T	T	9820438	1	4	158	0	1	0	0	0	0	0	0	0	6312	696	24	4		4	GAS7	17	9820438	3'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	2241024	9820438	71374772	522	133434											
MYH4	4622	broad.mit.edu	37	chr17	10348183	10348183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcaacattgtgcttctGttcactttccacctcacttt	4	14	4	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10348183	T	T	10348183	3	4	158	1	0	0	0	0	1	0	0	0	10131	1386	48	3	331	3	MYH4	17	10348183	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	527745	10348183	70847027	523	133435											
MYH2	4620	broad.mit.edu	37	chr17	10443380	10443380	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcccaaaatatcaatagCactctgtcaatataaccaat	3	10	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10443380	T	T	10443380	3	4	158	1	0	0	0	0	1	0	0	0	10129	710	25	4	4929	4	MYH2	17	10443380	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	95197	10443380	70751830	524	133436											
MAP2K3	5606	broad.mit.edu	37	chr17	21207629	21207629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactggggcatgggagggGgcacaggaggggtcttgggc	21	9	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21207629	T	T	21207629	1	4	158	0	1	0	0	0	0	0	0	0	9330	1247	43	2		2	MAP2K3	17	21207629	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	10764249	21207629	59987581	525	133437											
NOS2	4843	broad.mit.edu	37	chr17	26095988	26095988	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccctgctgtggggcagctcTggctgggaactgaccttgaa	14	11	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26095988	A	A	26095988	1	1	158	0	1	0	0	0	0	0	0	0	10638	1595	55	5		5	NOS2	17	26095988	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	4888359	26095988	55099222	526	133438											
SUPT6H	6830	broad.mit.edu	37	chr17	27015143	27015143	+	Frame_Shift_Del	DEL	G	-	-													caacacccggctcgagagccGgacccagctggtcaccatgt							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27015143	-	-	27015143	7	5	158	1	0	1	0	1	0	0	0	0	15518	1116	39	0	3131	0	SUPT6H	17	27015143	Frame_Shift_Del	DEL	G	TCGA-50-5931-01A-11D-1753-08	919155	27015143	54180067	527	133439											
RAD51L3	5892	broad.mit.edu	37	chr17	33433505	33433505	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccggagagcttctgcctgaAgcggtggaaaagaaaagcaa	13	8	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33433505	G	G	33433505	1	3	158	0	1	0	0	0	0	0	0	0	13098	87	3	5		5	RAD51L3	17	33433505	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	6418362	33433505	47761705	528	133440											
ACACA	31	broad.mit.edu	37	chr17	35508206	35508206	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agccagttcttcaaaaatttCacattctggaaagatttacc	5	9	4	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35508206	A	A	35508206	1	1	158	0	1	0	0	0	0	0	0	0	106	841	29	3		3	ACACA	17	35508206	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2074701	35508206	45687004	529	133441											
DDX52	11056	broad.mit.edu	37	chr17	35981583	35981583	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accctaaaagaagacaaaaaTtggcatacataactcaatca	4	9	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35981583	C	C	35981583	1	2	158	0	1	0	0	0	0	0	0	0	4403	1508	52	5		5	DDX52	17	35981583	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	473377	35981583	45213627	530	133442											
ACLY	47	broad.mit.edu	37	chr17	40025125	40025125	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctactactgcccaagaatgaGaagaaaaggggtgctctggg	13	8	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40025125	A	A	40025125	1	1	158	0	1	0	0	0	0	0	0	0	143	957	33	4		4	ACLY	17	40025125	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4043542	40025125	41170085	531	133443											
TMEM106A	113277	broad.mit.edu	37	chr17	41367709	41367709	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtagtgtgcaggggaaAgctttgtatatggagaggag	19	2	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41367709	G	G	41367709	1	3	158	0	1	0	0	0	0	0	0	0	16143	87	3	5		5	TMEM106A	17	41367709	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1342584	41367709	39827501	532	133444											
HOXB9	3219	broad.mit.edu	37	chr17	46700481	46700481	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagagcgagcgtgcagccaGttggcggaggggttggctga	20	7	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46700481	C	C	46700481	3	2	158	1	0	0	0	0	1	0	0	0	7375	1020	36	4	222	4	HOXB9	17	46700481	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	5332772	46700481	34494729	533	133445											
ABCC3	8714	broad.mit.edu	37	chr17	48744863	48744863	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtaggaccctgtgagcagGaggtcaggggagggagcagg	21	6	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48744863	A	A	48744863	1	1	158	0	1	0	0	0	0	0	0	0	54	1189	41	4		4	ABCC3	17	48744863	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2044382	48744863	32450347	534	133446											
SPAG9	9043	broad.mit.edu	37	chr17	49073994	49073994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttccttctgaacatgtgCttttacctgacgatactgct	7	11	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49073994	T	T	49073994	3	4	158	1	0	0	0	0	1	0	0	0	15101	797	28	4	2125	4	SPAG9	17	49073994	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	329131	49073994	32121216	535	133447											
STXBP4	252983	broad.mit.edu	37	chr17	53078335	53078335	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttaagactttgaagaagGgtgaattatgtctttgttcc	10	5	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53078335	T	T	53078335	1	4	158	0	1	0	0	0	0	0	0	0	15473	1247	43	2		2	STXBP4	17	53078335	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	4004341	53078335	28116875	536	133448											
TEX14	56155	broad.mit.edu	37	chr17	56693591	56693591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtgggctcatcatcagCttgaatcacttccttttctc	8	11	5	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56693591	A	A	56693591	3	1	158	1	0	0	0	0	1	0	0	0	15900	797	28	3	3871	3	TEX14	17	56693591	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	3615256	56693591	24501619	537	133449											
GH2	2689	broad.mit.edu	37	chr17	61959201	61959201	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggaccctgagtggttcGgggagttgggccttgggatc	17	9	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61959201	A	A	61959201	1	1	158	0	1	0	0	0	0	0	0	0	6432	1131	39	4		4	GH2	17	61959201	5'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	5265610	61959201	19236009	538	133450											
GH1	2688	broad.mit.edu	37	chr17	61996176	61996176	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggaccctgagtggttcGgggagttgggccttgggatc	17	9	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61996176	A	A	61996176	1	1	158	0	1	0	0	0	0	0	0	0	6431	1131	39	4		4	GH1	17	61996176	5'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	36975	61996176	19199034	539	133451											
CCDC46	201134	broad.mit.edu	37	chr17	63685394	63685394	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacacttggaaaaatagttCtacaccatgaactggcacta	7	10	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63685394	A	A	63685394	1	1	158	0	1	0	0	0	0	0	0	0	2845	928	32	3		3	CCDC46	17	63685394	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1689218	63685394	17509816	540	133452											
CCDC46	201134	broad.mit.edu	37	chr17	64125969	64125969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaagggaaaaaggaagaGgagaggaaggaaagatggaa	16	1	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64125969	T	T	64125969	1	4	158	0	1	0	0	0	0	0	0	0	2845	1015	35	2		2	CCDC46	17	64125969	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	440575	64125969	17069241	541	133453											
CD300LD	100131439	broad.mit.edu	37	chr17	72584765	72584765	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatggtcacggtgaacacGtggtttttctgattgtccct	10	10	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72584765	A	A	72584765	2	1	158	1	0	0	0	0	0	0	0	1	3030	1136	40	4		4	CD300LD	17	72584765	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	8458796	72584765	8610445	542	133454											
GRIN2C	2905	broad.mit.edu	37	chr17	72846704	72846704	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctccacagacctgaaggtgTggttgctctgcctgcggcag	13	13	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72846704	A	A	72846704	3	1	158	1	0	0	0	0	1	0	0	0	6847	1696	59	5	2421	5	GRIN2C	17	72846704	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	261939	72846704	8348506	543	133455											
AFMID	125061	broad.mit.edu	37	chr17	76201121	76201121	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactcttcgaagggggcctgAtgttgtggggaaactgcgtg	17	7	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76201121	T	T	76201121	1	4	158	0	1	0	0	0	0	0	0	0	362	348	12	5		5	AFMID	17	76201121	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	3354417	76201121	4994089	544	133456											
CYTH1	9267	broad.mit.edu	37	chr17	76688499	76688499	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgactagcaggtgctcacCgtggtatactcaaagtagta	11	10	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76688499	A	A	76688499	2	1	158	1	0	0	0	0	0	0	0	1	4236	666	23	1		1	CYTH1	17	76688499	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	487378	76688499	4506711	545	133457											
ENGASE	64772	broad.mit.edu	37	chr17	77078118	77078118	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttgctcgagggaacgtGgtcggaggccgattcgacac	16	9	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77078118	T	T	77078118	2	4	158	1	0	0	0	0	0	0	0	1	5160	1335	47	2		2	ENGASE	17	77078118	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	389619	77078118	4117092	546	133458											
CBX4	8535	broad.mit.edu	37	chr17	77808278	77808278	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtggtggtggtgatggGggtgcgggtgcgggtggtgt	27	2	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77808278	C	C	77808278	3	2	158	1	0	0	0	0	1	0	0	0	2746	1232	43	4	523	4	CBX4	17	77808278	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	730160	77808278	3386932	547	133459											
PCYT2	5833	broad.mit.edu	37	chr17	79866977	79866977	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccctccagtaggaggccCcttcccagcacccagctgta	10	18	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79866977	A	A	79866977	1	1	158	0	1	0	0	0	0	0	0	0	11706	638	22	2		2	PCYT2	17	79866977	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2058699	79866977	1328233	548	133460											
DUS1L	64118	broad.mit.edu	37	chr17	80019862	80019862	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgtgcaccgtcagcaactAggacagagcagtggtcgctt	12	12	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80019862	G	G	80019862	1	3	158	0	1	0	0	0	0	0	0	0	4845	435	15	5		5	DUS1L	17	80019862	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	152885	80019862	1175348	549	133461											
TYMS	7298	broad.mit.edu	37	chr18	669193	669193	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggttgaaagaaccccgtcgtCttcatttatactaaccatac	6	11	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	669193	A	A	669193	1	1	158	0	1	0	0	0	0	0	0	0	16938	928	32	3		3	TYMS	18	669193	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08		669193	77408055	550	133462											
LAMA1	284217	broad.mit.edu	37	chr18	6971840	6971840	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taacatactatgtgctaaacCgtgacgacatcttaccttcc	5	12	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6971840	G	G	6971840	1	3	158	0	1	0	0	0	0	0	0	0	8677	667	23	4		4	LAMA1	18	6971840	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	6302647	6971840	71105408	551	133463											
CEP192	55125	broad.mit.edu	37	chr18	13059303	13059303	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccattgccgagagtcctGttattgaggtacctgtttga	11	9	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13059303	A	A	13059303	3	1	158	1	0	0	0	0	1	0	0	0	3281	1377	48	4	4558	4	CEP192	18	13059303	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	6087463	13059303	65017945	552	133464											
CDH2	1000	broad.mit.edu	37	chr18	25572823	25572823	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgcgagaaagacaaaccTcagtcagaggaggggcatgg	14	8	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25572823	A	A	25572823	1	1	158	0	1	0	0	0	0	0	0	0	3135	1566	54	5		5	CDH2	18	25572823	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	12513520	25572823	52504425	553	133465											
DSC2	1824	broad.mit.edu	37	chr18	28667798	28667798	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgaagagagtaaaataagGagaaaagtgaaaataatctt	10	1	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28667798	A	A	28667798	1	1	158	0	1	0	0	0	0	0	0	0	4806	1189	41	4		4	DSC2	18	28667798	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	3094975	28667798	49409450	554	133466											
SYT4	6860	broad.mit.edu	37	chr18	40850395	40850395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccaccagttccttctgCtgctgcacccaagactaact	5	17	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40850395	A	A	40850395	3	1	158	1	0	0	0	0	1	0	0	0	15595	797	28	3	92	3	SYT4	18	40850395	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	12182597	40850395	37226853	555	133467											
MRO	83876	broad.mit.edu	37	chr18	48350201	48350201	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaggattggtggcccaaaAatgtgttgaatttttgctgc	11	7	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48350201	T	T	48350201	1	4	158	0	1	0	0	0	0	0	0	0	9866	29	1	5		5	MRO	18	48350201	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	7499806	48350201	29727047	556	133468											
CCBE1	147372	broad.mit.edu	37	chr18	57106566	57106566	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattagccgggagtggtggtGcacacctgtggtcccagctg	15	10	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57106566	A	A	57106566	1	1	158	0	1	0	0	0	0	0	0	0	2757	1334	46	4		4	CCBE1	18	57106566	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	8756365	57106566	20970682	557	133469											
NETO1	81832	broad.mit.edu	37	chr18	70417732	70417732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctttggacatactttttaCgaggctgtttgatctgtacg	9	8	1	1	rs140307788	byFrequency	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70417732	T	T	70417732	3	4	158	1	0	0	0	0	1	0	0	0	10434	536	19	4	503	4	NETO1	18	70417732	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	13311166	70417732	7659516	558	133470											
ZNF407	55628	broad.mit.edu	37	chr18	72347733	72347733	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccatccagatatgcagccCtacctgtggctgctcattgg	9	14	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72347733	T	T	72347733	1	4	158	0	1	0	0	0	0	0	0	0	18014	696	24	4		4	ZNF407	18	72347733	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1930001	72347733	5729515	559	133471											
ZADH2	284273	broad.mit.edu	37	chr18	72913607	72913607	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcaggaagaagccctgtaCgctggcagatttcttgagca	12	9	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72913607	T	T	72913607	3	4	158	1	0	0	0	0	1	0	0	0	17638	536	19	4	239	4	ZADH2	18	72913607	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	565874	72913607	5163641	560	133472											
MATK	4145	broad.mit.edu	37	chr19	3779791	3779791	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaggtactcaccctgcagGacagctggggggtgggggtg	18	11	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3779791	T	T	3779791	2	4	158	1	0	0	0	0	0	0	0	1	9424	1161	41	3		3	MATK	19	3779791	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08		3779791	55349192	561	133473											
ITGB1BP3	27231	broad.mit.edu	37	chr19	3942008	3942008	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatctccttgctcctgacccAgccgtccactcgtccccccg	7	21	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3942008	T	T	3942008	1	4	158	0	1	0	0	0	0	0	0	0	7963	203	7	5		5	ITGB1BP3	19	3942008	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	162217	3942008	55186975	562	133474											
ARRDC5	645432	broad.mit.edu	37	chr19	4896732	4896732	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttccttgaaccaataagTacatcctcttcttggctaaa	5	10	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4896732	C	C	4896732	3	2	158	1	0	0	0	0	1	0	0	0	990	1638	57	5	584	5	ARRDC5	19	4896732	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	954724	4896732	54232251	563	133475											
SAFB	6294	broad.mit.edu	37	chr19	5645430	5645430	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaactgttgtatgtctcAgtacttttagaatgaaaggt	10	4	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5645430	G	G	5645430	1	3	158	0	1	0	0	0	0	0	0	0	13917	203	7	5		5	SAFB	19	5645430	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	748698	5645430	53483553	564	133476											
SLC25A23	79085	broad.mit.edu	37	chr19	6457633	6457633	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccggaggtggggaaggatgTgcgtgtgaggacacctgggg	22	6	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6457633	C	C	6457633	1	2	158	0	1	0	0	0	0	0	0	0	14600	1711	59	5		5	SLC25A23	19	6457633	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	812203	6457633	52671350	565	133477											
FBN3	84467	broad.mit.edu	37	chr19	8156282	8156282	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaaaccacagccctcttTtctgggcaatctgacccttc	6	15	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8156282	G	G	8156282	1	3	158	0	1	0	0	0	0	0	0	0	5761	1856	64	5		5	FBN3	19	8156282	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	1698649	8156282	50972701	566	133478											
MUC16	94025	broad.mit.edu	37	chr19	9049765	9049765	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtggaagatacagtgtcTaattcactgtggaaaaaatt	10	5	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9049765	C	C	9049765	2	2	158	1	0	0	0	0	0	0	0	1	10067	1519	53	5		5	MUC16	19	9049765	Silent	SNP	T	TCGA-50-5931-01A-11D-1753-08	893483	9049765	50079218	567	133479											
MUC16	94025	broad.mit.edu	37	chr19	9063480	9063480	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagatgctctctggtaatGtggaggaaacaggagaaggt	15	4	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9063480	C	C	9063480	3	2	158	1	0	0	0	0	1	0	0	0	10067	1377	48	4	19885	4	MUC16	19	9063480	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	13715	9063480	50065503	568	133480											
MUC16	94025	broad.mit.edu	37	chr19	9091090	9091090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaatttggggtccctttaGgtgataggtcaaggaaggaa	15	4	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9091090	T	T	9091090	3	4	158	1	0	0	0	0	1	0	0	0	10067	1000	35	2	43134	2	MUC16	19	9091090	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	27610	9091090	50037893	569	133481											
ATG4D	84971	broad.mit.edu	37	chr19	10655478	10655478	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttgggtggttaaaagccgGaccagctttagcaagatctc	13	8	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10655478	T	T	10655478	2	4	158	1	0	0	0	0	0	0	0	1	1103	1161	41	3		3	ATG4D	19	10655478	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	1564388	10655478	48473505	570	133482											
BRD4	23476	broad.mit.edu	37	chr19	15367954	15367954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcctcaggctcgtccgGcatcttggcaaagcgcattt	11	13	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15367954	T	T	15367954	3	4	158	1	0	0	0	0	1	0	0	0	1513	1203	42	3	2783	3	BRD4	19	15367954	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	4712476	15367954	43761029	571	133483											
SLC35E1	79939	broad.mit.edu	37	chr19	16664607	16664607	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccccgtgctgggggaagagGaggccgttgtggggcttctc	18	10	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16664607	A	A	16664607	2	1	158	1	0	0	0	0	0	0	0	1	14698	1161	41	4		4	SLC35E1	19	16664607	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	1296653	16664607	42464376	572	133484											
KLHL26	55295	broad.mit.edu	37	chr19	18778558	18778558	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccgtggcctgcggcacatCatcgacttcgcctacagcgc	11	17	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18778558	G	G	18778558	3	3	158	1	0	0	0	0	1	0	0	0	8452	816	29	4	361	4	KLHL26	19	18778558	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2113951	18778558	40350425	573	133485											
ATP13A1	57130	broad.mit.edu	37	chr19	19766306	19766306	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcctcggagggtgggCgcaggggaccacagaggccg	20	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19766306	T	T	19766306	1	4	158	0	1	0	0	0	0	0	0	0	1127	783	27	4		4	ATP13A1	19	19766306	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	987748	19766306	39362677	574	133486											
ZNF43	7594	broad.mit.edu	37	chr19	21992461	21992461	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattataacctcctctgtgCaccttacactcatccacact	2	17	2	0	rs147543020		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21992461	T	T	21992461	2	4	158	1	0	0	0	0	0	0	0	1	18030	697	25	4		4	ZNF43	19	21992461	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	2226155	21992461	37136522	575	133487											
ZNF676	163223	broad.mit.edu	37	chr19	22379529	22379529	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctaaatgtcaatgctccCtggaaaacacacacaaacac	4	14	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22379529	A	A	22379529	1	1	158	1	0	0	0	0	0	0	0	0	18210	696	24	2		2	ZNF676	19	22379529	Translation_Start_Site	SNP	C	TCGA-50-5931-01A-11D-1753-08	387068	22379529	36749454	576	133488											
ZNF99	7652	broad.mit.edu	37	chr19	22942366	22942366	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattgacactttcacaatcTtttcttaatcgtaaattctt	2	9	5	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22942366	A	A	22942366	3	1	158	1	0	0	0	0	1	0	0	0	18333	1606	56	5	2720	5	ZNF99	19	22942366	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	562837	22942366	36186617	577	133489											
ZNF536	9745	broad.mit.edu	37	chr19	31039889	31039889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtgtttacccaggcatGgttggctcaggggcctccag	14	10	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039889	T	T	31039889	3	4	158	1	0	0	0	0	1	0	0	0	18101	1348	47	2	3373	2	ZNF536	19	31039889	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	8097523	31039889	28089094	578	133490											
CCDC123	84902	broad.mit.edu	37	chr19	33439179	33439179	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttctacctttttgTtgtgtccgctgtggtgcagg	10	7	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33439179	C	C	33439179	2	2	158	1	0	0	0	0	0	0	0	1	2785	1722	60	5		5	CCDC123	19	33439179	Silent	SNP	T	TCGA-50-5931-01A-11D-1753-08	2399290	33439179	25689804	579	133491											
KIRREL2	84063	broad.mit.edu	37	chr19	36350399	36350399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaccctgctgaaggaagGgacccctgggtcagtggaga	15	11	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36350399	T	T	36350399	3	4	158	1	0	0	0	0	1	0	0	0	8396	1232	43	2	557	2	KIRREL2	19	36350399	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	2911220	36350399	22778584	580	133492											
ZNF568	374900	broad.mit.edu	37	chr19	37427558	37427558	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtactcctacctctgaccCctgagtaccagctaaacaag	6	14	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37427558	G	G	37427558	1	3	158	0	1	0	0	0	0	0	0	0	18126	638	22	4		4	ZNF568	19	37427558	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1077159	37427558	21701425	581	133493											
ZNF573	126231	broad.mit.edu	37	chr19	38282693	38282693	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagtctatgaaggaactaGattctggtctggctgaatct	10	8	4	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38282693	T	T	38282693	1	4	158	0	1	0	0	0	0	0	0	0	18132	957	33	3		3	ZNF573	19	38282693	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	855135	38282693	20846290	582	133494											
RASGRP4	115727	broad.mit.edu	37	chr19	38905688	38905688	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcagccggaaacccgCgcagccagcccaggtgcggc	14	16	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38905688	G	G	38905688	3	3	158	1	0	0	0	0	1	0	0	0	13185	768	27	4	1027	4	RASGRP4	19	38905688	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	622995	38905688	20223295	583	133495											
RYR1	6261	broad.mit.edu	37	chr19	39009697	39009697	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggttaggggctatggctggGatcagtgttcagggactata	16	5	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39009697	T	T	39009697	1	4	158	0	1	0	0	0	0	0	0	0	13879	1189	41	3		3	RYR1	19	39009697	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	104009	39009697	20119286	584	133496											
RYR1	6261	broad.mit.edu	37	chr19	39063772	39063772	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgagactatggtccaGccaaggtgcctgacgcccac	11	14	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39063772	C	C	39063772	1	2	158	0	1	0	0	0	0	0	0	0	13879	986	34	4		4	RYR1	19	39063772	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	54075	39063772	20065211	585	133497											
FCGBP	8857	broad.mit.edu	37	chr19	40430472	40430472	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtacgaacaggtgcccaTcatgtcgtagcgacggccgt	13	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40430472	G	G	40430472	3	3	158	1	0	0	0	0	1	0	0	0	5835	1435	50	5	14882	5	FCGBP	19	40430472	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	1366700	40430472	18698511	586	133498											
B3GNT8	374907	broad.mit.edu	37	chr19	41932338	41932338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgacagcaagaagcggcGgaggtccttggggtaggagg	19	7	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41932338	T	T	41932338	3	4	158	1	0	0	0	0	1	0	0	0	1268	1116	39	1	851	1	B3GNT8	19	41932338	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1501866	41932338	17196645	587	133499											
ATP1A3	478	broad.mit.edu	37	chr19	42474762	42474762	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccctctgcccctcctctGccctcatccaacgtcctttt	3	21	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42474762	T	T	42474762	1	4	158	0	1	0	0	0	0	0	0	0	1134	1334	46	3		3	ATP1A3	19	42474762	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	542424	42474762	16654221	588	133500											
POU2F2	5452	broad.mit.edu	37	chr19	42599863	42599863	+	Intron	SNP	C	A	A													tctctgtgcgccgggggagaCgtgagcatgagaaggggcct							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42599863	A	A	42599863	1	1	158	0	1	0	0	0	0	0	0	0	12368	551	19	3		3	POU2F2	19	42599863	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	125101	42599863	16529120	589	133501	572	2									
POU2F2	5452	broad.mit.edu	37	chr19	42599872	42599872	+	Intron	SNP	G	A	A													gccgggggagacgtgagcatGagaaggggcctcccgcggcc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42599872	A	A	42599872	1	1	158	0	1	0	0	0	0	0	0	0	12368	1305	45	4		4	POU2F2	19	42599872	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	9	42599872	16529111	590	133502	572	2									
PSG1	5669	broad.mit.edu	37	chr19	43359626	43359626	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggcttctttcatttttTagaaccccatcctctccagg	6	13	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43359626	C	C	43359626	1	2	158	0	1	0	0	0	0	0	0	0	12759	1769	61	5		5	PSG1	19	43359626	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	759754	43359626	15769357	591	133503											
MARK4	57787	broad.mit.edu	37	chr19	45805710	45805710	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgaagctgaccagctcGcgccctcctgaggccctgat	12	14	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45805710	T	T	45805710	2	4	158	1	0	0	0	0	0	0	0	1	9407	1102	38	3		3	MARK4	19	45805710	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	2446084	45805710	13323273	592	133504											
DHDH	27294	broad.mit.edu	37	chr19	49439303	49439303	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctagaggtggcctacattGgcacccagcacccccagcac	9	18	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49439303	A	A	49439303	3	1	158	1	0	0	0	0	1	0	0	0	4519	1348	47	4	227	4	DHDH	19	49439303	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	3633593	49439303	9689680	593	133505											
TRPM4	54795	broad.mit.edu	37	chr19	49714108	49714108	+	Intron	DEL	G	-	-													cacgtcccagaagtgagagcGgggcctggtcggggatgggg							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49714108	-	-	49714108	6	5	158	0	1	1	0	1	0	0	0	0	16713	1131	39	0		0	TRPM4	19	49714108	Intron	DEL	G	TCGA-50-5931-01A-11D-1753-08	274805	49714108	9414875	594	133506											
PRMT1	3276	broad.mit.edu	37	chr19	50180439	50180439	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatcttccagcggggtcgcGgtaggcgggccgtggaccct	16	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50180439	A	A	50180439	1	1	158	0	1	0	0	0	0	0	0	0	12641	1131	39	4		4	PRMT1	19	50180439	5'Flank	SNP	G	TCGA-50-5931-01A-11D-1753-08	466331	50180439	8948544	595	133507											
MED25	81857	broad.mit.edu	37	chr19	50334760	50334760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcacttgggactcctggGgccgtggggctgggcatgta	19	9	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50334760	T	T	50334760	1	4	158	0	1	0	0	0	0	0	0	0	9536	1247	43	2		2	MED25	19	50334760	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	154321	50334760	8794223	596	133508											
SIGLEC5	8778	broad.mit.edu	37	chr19	52115520	52115520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccgagtactccgtggtGcttggggcctcctggtcctt	12	13	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52115520	T	T	52115520	3	4	158	1	0	0	0	0	1	0	0	0	14424	1310	46	3	39	3	SIGLEC5	19	52115520	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1780760	52115520	7013463	597	133509											
NLRP12	91662	broad.mit.edu	37	chr19	54327134	54327134	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttgcctgtcccgccacctCcttacccctcaccaggtcct	5	22	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54327134	A	A	54327134	1	1	158	0	1	0	0	0	0	0	0	0	10569	870	30	3		3	NLRP12	19	54327134	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	2211614	54327134	4801849	598	133510											
NCR1	9437	broad.mit.edu	37	chr19	55424268	55424268	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagacacagtggccatgGgtggatctgaaagctggtgt	15	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55424268	T	T	55424268	1	4	158	0	1	0	0	0	0	0	0	0	10332	1247	43	2		2	NCR1	19	55424268	3'UTR	SNP	G	TCGA-50-5931-01A-11D-1753-08	1097134	55424268	3704715	599	133511											
NLRP11	204801	broad.mit.edu	37	chr19	56320320	56320320	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaaattcttcttcccgAttctcatagagacagtaaaa	4	10	4	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56320320	G	G	56320320	2	3	158	1	0	0	0	0	0	0	0	1	10568	330	12	5		5	NLRP11	19	56320320	Silent	SNP	A	TCGA-50-5931-01A-11D-1753-08	896052	56320320	2808663	600	133512											
USP29	57663	broad.mit.edu	37	chr19	57640629	57640629	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaccaaacaagaaatatAagacagattccttgaaatat	5	7	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57640629	G	G	57640629	3	3	158	1	0	0	0	0	1	0	0	0	17186	363	13	5	588	5	USP29	19	57640629	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	1320309	57640629	1488354	601	133513											
ZNF772	400720	broad.mit.edu	37	chr19	57988721	57988722	+	5'UTR	INS	-	G	G													ggcgacaagtgcaggaacctINSgggatcagctgtccagggcc							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57988722	G	G	57988721	6	5	158	0	1	1	1	0	0	0	0	0	18274	1595	55	0		0	ZNF772	19	57988721	5'UTR	INS	-	TCGA-50-5931-01A-11D-1753-08	348092	57988721	1140262	602	133514											
ZNF814	730051	broad.mit.edu	37	chr19	58379710	58379710	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagtggtctgccccgtatGatatcaggaccatcctgctc	10	12	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58379710	C	C	58379710	1	2	158	0	1	0	0	0	0	0	0	0	18305	1305	45	4		4	ZNF814	19	58379710	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	390989	58379710	749273	603	133515											
ZNF418	147686	broad.mit.edu	37	chr19	58438312	58438312	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcgctgatggttcctaaGgtgtccctttcgactaaaag	9	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58438312	A	A	58438312	3	1	158	1	0	0	0	0	1	0	0	0	18022	1000	35	4	797	4	ZNF418	19	58438312	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	58602	58438312	690671	604	133516											
ZSCAN1	284312	broad.mit.edu	37	chr19	58551771	58551771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcctggagaattggggGctctgggaagaacaggcccc	17	9	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58551771	T	T	58551771	1	4	158	0	1	0	0	0	0	0	0	0	18355	1218	42	3		3	ZSCAN1	19	58551771	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	113459	58551771	577212	605	133517											
SPTLC3	55304	broad.mit.edu	37	chr20	13074325	13074325	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcaaggtgacaacgtaGcctcatgaaacacaattatg	7	10	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13074325	A	A	13074325	1	1	158	0	1	0	0	0	0	0	0	0	15243	986	34	4		4	SPTLC3	20	13074325	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08		13074325	49951195	606	133518											
SNX5	27131	broad.mit.edu	37	chr20	17934792	17934792	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggaactcatgagcctcTtgtcccagcagcgatgtttt	11	11	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17934792	C	C	17934792	1	2	158	0	1	0	0	0	0	0	0	0	15019	1624	56	5		5	SNX5	20	17934792	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	4860467	17934792	45090728	607	133519											
CRNKL1	51340	broad.mit.edu	37	chr20	20018200	20018200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagacaactcaaactgagCaaagctgatccataccttta	6	10	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20018200	A	A	20018200	3	1	158	1	0	0	0	0	1	0	0	0	3923	710	25	3	408	3	CRNKL1	20	20018200	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2083408	20018200	43007320	608	133520											
XRN2	22803	broad.mit.edu	37	chr20	21367491	21367491	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggcttctgatgtaaaactGgtactttcctacagaggcgt	11	8	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21367491	C	C	21367491	1	2	158	0	1	0	0	0	0	0	0	0	17587	1363	47	4		4	XRN2	20	21367491	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1349291	21367491	41658029	609	133521											
TPX2	22974	broad.mit.edu	37	chr20	30382455	30382456	+	Intron	DNP	TC	AA	AA													ggttaacatgctacattgttTcaggggctctcactgtaaat							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	30382456	AA	AA	30382455	1	1	158	0	1	0	0	0	0	0	0	0	16556	1798	62	5		5	TPX2	20	30382455	Intron	DNP	TC	TCGA-50-5931-01A-11D-1753-08	9014964	30382455	32643065	610	133522											
HNF4A	3172	broad.mit.edu	37	chr20	43042474	43042474	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctgccacccacccagggatCccccacactacagaggagct	8	19	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43042474	G	G	43042474	1	3	158	0	1	0	0	0	0	0	0	0	7320	870	30	4		4	HNF4A	20	43042474	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	12660019	43042474	19983046	611	133523											
PREX1	57580	broad.mit.edu	37	chr20	47256395	47256395	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgctaatctggatcaggctCcggccacggattgtacactc	10	12	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47256395	A	A	47256395	2	1	158	1	0	0	0	0	0	0	0	1	12582	842	30	3		3	PREX1	20	47256395	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	4213921	47256395	15769125	612	133524											
ZNFX1	57169	broad.mit.edu	37	chr20	47892433	47892433	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatctggaaaactgcacatGttgagttatcagtgtcctcg	9	8	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47892433	T	T	47892433	1	4	158	0	1	0	0	0	0	0	0	0	18334	1392	48	3		3	ZNFX1	20	47892433	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	636038	47892433	15133087	613	133525											
KCNB1	3745	broad.mit.edu	37	chr20	47989929	47989929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgctgtggtgtagatggagGactctgggctcagcacagcc	15	9	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47989929	T	T	47989929	3	4	158	1	0	0	0	0	1	0	0	0	8082	1174	41	3	412	3	KCNB1	20	47989929	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	97496	47989929	15035591	614	133526											
TSHZ2	128553	broad.mit.edu	37	chr20	51871355	51871355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaactcagcatcagattGtacagcctctacaactgagt	7	11	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51871355	T	T	51871355	3	4	158	1	0	0	0	0	1	0	0	0	16749	1377	48	3	1364	3	TSHZ2	20	51871355	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	3881426	51871355	11154165	615	133527											
NTSR1	4923	broad.mit.edu	37	chr20	61389757	61389757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggacaagtaagtgctccCaaaacagatggtgggtgtgg	15	7	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61389757	A	A	61389757	1	1	158	0	1	0	0	0	0	0	0	0	10805	609	21	2		2	NTSR1	20	61389757	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	9518402	61389757	1635763	616	133528											
COL9A3	1299	broad.mit.edu	37	chr20	61467557	61467557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctggcagtcgaggggagCtgggccccaaaggcacccag	16	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61467557	A	A	61467557	3	1	158	1	0	0	0	0	1	0	0	0	3741	796	28	3	1530	3	COL9A3	20	61467557	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	77800	61467557	1557963	617	133529											
TCFL5	10732	broad.mit.edu	37	chr20	61491435	61491435	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataagttaaaatttacccaTttaatacaaaagagcaaagc	4	6	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61491435	C	C	61491435	1	2	158	0	1	0	0	0	0	0	0	0	15821	1508	52	5		5	TCFL5	20	61491435	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	23878	61491435	1534085	618	133530											
COL20A1	57642	broad.mit.edu	37	chr20	61939447	61939447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaacacgttcacaggtacGgcccaggcctgcccctccct	11	17	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61939447	T	T	61939447	1	4	158	0	1	0	0	0	0	0	0	0	3711	1131	39	1		1	COL20A1	20	61939447	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	448012	61939447	1086073	619	133531											
TPTE	7179	broad.mit.edu	37	chr21	10916334	10916334	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagtggggacattggccctCctgcccaattcttcaattat	9	11	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10916334	A	A	10916334	1	1	158	0	1	0	0	0	0	0	0	0	16554	870	30	3		3	TPTE	21	10916334	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08		10916334	37213561	620	133532											
BAGE2	85319	broad.mit.edu	37	chr21	11049614	11049614	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacactgcacagtttgcatcTtccttcgctataattaacag	5	12	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11049614	A	A	11049614	3	1	158	1	0	0	0	0	1	0	0	0	1297	1609	56	5	46	5	BAGE2	21	11049614	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	133280	11049614	37080281	621	133533											
GRIK1	2897	broad.mit.edu	37	chr21	31066378	31066378	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttccactgtttcaaaaatCcctcctgcagaagcaaaaga	5	11	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31066378	A	A	31066378	2	1	158	1	0	0	0	0	0	0	0	1	6839	842	30	3		3	GRIK1	21	31066378	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	20016764	31066378	17063517	622	133534											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253887	32253887	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcttgctgaagttacctcCtgagttgtgaatgtcactcc	9	10	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32253887	A	A	32253887	1	1	158	0	1	0	0	0	0	0	0	0	8588	696	24	2		2	KRTAP11-1	21	32253887	5'Flank	SNP	C	TCGA-50-5931-01A-11D-1753-08	1187509	32253887	15876008	623	133535											
IFNGR2	3460	broad.mit.edu	37	chr21	34793969	34793969	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcctgggtgacaatgcCttggtttcaacactatcgga	10	10	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34793969	T	T	34793969	3	4	158	1	0	0	0	0	1	0	0	0	7620	681	24	4	399	4	IFNGR2	21	34793969	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2540082	34793969	13335926	624	133536											
PCBP3	54039	broad.mit.edu	37	chr21	47333886	47333886	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccaccgaaaggtgccaccAttccctaccgcccaaagccc	6	21	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47333886	G	G	47333886	3	3	158	1	0	0	0	0	1	0	0	0	11596	217	8	5	652	5	PCBP3	21	47333886	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	12539917	47333886	796009	625	133537											
DIP2A	23181	broad.mit.edu	37	chr21	47970495	47970495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggcgtgtactgtctgGccctggttcctgccaacacc	13	13	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47970495	T	T	47970495	3	4	158	1	0	0	0	0	1	0	0	0	4567	1203	42	3	2849	3	DIP2A	21	47970495	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	636609	47970495	159400	626	133538											
GAB4	128954	broad.mit.edu	37	chr22	17488963	17488963	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcaaatgccgggtcaggTgggcacagctcccgggaggg	19	11	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17488963	G	G	17488963	2	3	158	1	0	0	0	0	0	0	0	1	6211	1683	59	5		5	GAB4	22	17488963	Silent	SNP	T	TCGA-50-5931-01A-11D-1753-08		17488963	33815603	627	133539											
USP18	11274	broad.mit.edu	37	chr22	18640664	18640664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctccgctctgaagccgcAgagctttgtattcgacggct	10	15	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18640664	G	G	18640664	1	3	158	0	1	0	0	0	0	0	0	0	17175	203	7	5		5	USP18	22	18640664	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1151701	18640664	32663902	628	133540											
PIWIL3	440822	broad.mit.edu	37	chr22	25145503	25145503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagacctttaaaaaaatccAaaagatacagctgaacaagc	5	8	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25145503	G	G	25145503	1	3	158	0	1	0	0	0	0	0	0	0	12054	145	5	5		5	PIWIL3	22	25145503	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	6504839	25145503	26159063	629	133541											
SEC14L3	266629	broad.mit.edu	37	chr22	30862947	30862947	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaaagcaagcggggggTggccctaggacttctcctta	12	11	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30862947	G	G	30862947	1	3	158	0	1	0	0	0	0	0	0	0	14096	1711	59	5		5	SEC14L3	22	30862947	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	5717444	30862947	20441619	630	133542											
TNRC6B	23112	broad.mit.edu	37	chr22	40717290	40717290	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgaagatgcacccgtgaGtattctggcagctgctgaat	12	9	1	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40717290	A	A	40717290	1	1	158	0	1	0	0	0	0	0	0	0	16464	1044	36	4		4	TNRC6B	22	40717290	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	9854343	40717290	10587276	631	133543											
NAGA	4668	broad.mit.edu	37	chr22	42456311	42456311	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggacatctccaggttcttgAtgggatacaggtaccacatc	11	10	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42456311	G	G	42456311	3	3	158	1	0	0	0	0	1	0	0	0	10235	333	12	5	31	5	NAGA	22	42456311	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	1739021	42456311	8848255	632	133544											
ARFGAP3	26286	broad.mit.edu	37	chr22	43218186	43218186	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaccctcccttccccccccAcacaaaaatacatggcattt	3	18	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43218186	C	C	43218186	1	2	158	0	1	0	0	0	0	0	0	0	853	174	6	5		5	ARFGAP3	22	43218186	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	761875	43218186	8086380	633	133545											
EFCAB6	64800	broad.mit.edu	37	chr22	44198616	44198616	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatggagatgccaaaacaGaccgggcacagaaagctgaa	11	9	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44198616	A	A	44198616	1	1	158	0	1	0	0	0	0	0	0	0	4979	957	33	4		4	EFCAB6	22	44198616	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	980430	44198616	7105950	634	133546											
FBLN1	2192	broad.mit.edu	37	chr22	45960776	45960776	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttccaggcagaaatccaaGaagggaaggcagaacacccc	11	11	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45960776	T	T	45960776	1	4	158	0	1	0	0	0	0	0	0	0	5755	933	33	3		3	FBLN1	22	45960776	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1762160	45960776	5343790	635	133547											
FRMPD4	9758	broad.mit.edu	37	chrX	12627817	12627817	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacattgatgccttgtttcTcttgtatgtgctttctccac	6	10	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12627817	G	G	12627817	1	3	158	0	1	0	0	0	0	0	0	0	6119	1566	54	5		5	FRMPD4	23	12627817	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08		12627817	142642743	636	133548											
FRMPD4	9758	broad.mit.edu	37	chrX	12722395	12722396	+	Intron	DNP	CC	AA	AA													tcaccaagggttcatttgttCcaacaaacatcagagcacca							TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	12722396	AA	AA	12722395	1	1	158	0	1	0	0	0	0	0	0	0	6119	870	30	3		3	FRMPD4	23	12722395	Intron	DNP	CC	TCGA-50-5931-01A-11D-1753-08	94578	12722395	142548165	637	133549											
FANCB	2187	broad.mit.edu	37	chrX	14863236	14863236	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctttcctctttcttgctatCaggggtcaacgtgacccttt	8	12	4	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14863236	G	G	14863236	3	3	158	1	0	0	0	0	1	0	0	0	5720	826	29	4	922	4	FANCB	23	14863236	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2140841	14863236	140407324	638	133550											
RAI2	10742	broad.mit.edu	37	chrX	17819005	17819005	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgccactgggaagtttctCcatcactgtgtgacctgagc	10	12	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17819005	T	T	17819005	3	4	158	1	0	0	0	0	1	0	0	0	13117	864	30	4	470	4	RAI2	23	17819005	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2955769	17819005	137451555	639	133551											
BEND2	139105	broad.mit.edu	37	chrX	18221854	18221854	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccgaaacaaggaaatgagCcaccttgtgcgacatactgc	9	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18221854	G	G	18221854	3	3	158	1	0	0	0	0	1	0	0	0	1403	739	26	4	1791	4	BEND2	23	18221854	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	402849	18221854	137048706	640	133552											
PPEF1	5475	broad.mit.edu	37	chrX	18836203	18836203	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagatattaagagagagaGtgatttcacgaaaaagtgac	10	4	2	5			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18836203	A	A	18836203	3	1	158	1	0	0	0	0	1	0	0	0	12403	1029	36	4	1491	4	PPEF1	23	18836203	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	614349	18836203	136434357	641	133553											
RPS6KA3	6197	broad.mit.edu	37	chrX	20181004	20181004	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacaaaaaaccccaaacaAaacaaaaacctagataactt	1	11	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20181004	G	G	20181004	1	3	158	0	1	0	0	0	0	0	0	0	13763	29	1	5		5	RPS6KA3	23	20181004	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1344801	20181004	135089556	642	133554											
CNKSR2	22866	broad.mit.edu	37	chrX	21613222	21613222	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttaatttccagcTtttaaattataggttgctca	4	5	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21613222	A	A	21613222	1	1	158	0	1	0	0	0	0	0	0	0	3639	1624	56	5		5	CNKSR2	23	21613222	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	1432218	21613222	133657338	643	133555											
CXorf58	254158	broad.mit.edu	37	chrX	23930093	23930093	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttttttttttttgagaggGagtctggctctttcacccag	9	7	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23930093	T	T	23930093	1	4	158	0	1	0	0	0	0	0	0	0	4147	1189	41	3		3	CXorf58	23	23930093	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2316871	23930093	131340467	644	133556											
FAM48B1	100130302	broad.mit.edu	37	chrX	24382893	24382893	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctccagcaccccttcaGtttttcctaaatactccgga	4	15	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24382893	T	T	24382893	3	4	158	1	0	0	0	0	1	0	0	0	5624	1020	36	3	2018	3	FAM48B1	23	24382893	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	452800	24382893	130887667	645	133557											
ARX	170302	broad.mit.edu	37	chrX	25023071	25023071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatggcctcgggagctgtGcgcggcgcctcgggcagcgt	18	13	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25023071	T	T	25023071	1	4	158	0	1	0	0	0	0	0	0	0	1008	1334	46	3		3	ARX	23	25023071	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	640178	25023071	130247489	646	133558											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29973708	29973708	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaccattcacaaatgcgtcAgaaacactactaccgaagct	6	12	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29973708	G	G	29973708	3	3	158	1	0	0	0	0	1	0	0	0	7731	188	7	5	1900	5	IL1RAPL1	23	29973708	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	4950637	29973708	125296852	647	133559											
DMD	1756	broad.mit.edu	37	chrX	31196969	31196969	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttaggacaggatgatttCaaaactaatgaccactccag	8	8	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31196969	A	A	31196969	1	1	158	0	1	0	0	0	0	0	0	0	4620	841	29	3		3	DMD	23	31196969	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	1223261	31196969	124073591	648	133560											
MAGEB16	139604	broad.mit.edu	37	chrX	35821060	35821060	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggagagcccagaatgctCatcaccaaagattttgtgaa	9	8	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35821060	A	A	35821060	2	1	158	1	0	0	0	0	0	0	0	1	9266	813	29	3		3	MAGEB16	23	35821060	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	4624091	35821060	119449500	649	133561											
FAM47C	442444	broad.mit.edu	37	chrX	37029629	37029629	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttaattgggtatttcttgCtctcattttaaacatcagtc	6	7	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37029629	A	A	37029629	1	1	158	0	1	0	0	0	0	0	0	0	5622	812	28	3		3	FAM47C	23	37029629	3'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	1208569	37029629	118240931	650	133562											
CXorf38	159013	broad.mit.edu	37	chrX	40496313	40496313	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggatgttcttgaattcattCagaaaattttggatcttcat	8	5	5	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40496313	G	G	40496313	2	3	158	1	0	0	0	0	0	0	0	1	4140	813	29	4		4	CXorf38	23	40496313	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	3466684	40496313	114774247	651	133563											
WAS	7454	broad.mit.edu	37	chrX	48547174	48547174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggggattgccccacccCcaccaacaccccggggaccc	9	20	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48547174	A	A	48547174	3	1	158	1	0	0	0	0	1	0	0	0	17378	623	22	2	1095	2	WAS	23	48547174	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	8050861	48547174	106723386	652	133564											
HDAC6	10013	broad.mit.edu	37	chrX	48674127	48674127	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgtcttcagacttcctctGactttactgggctgccttgg	9	12	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48674127	T	T	48674127	1	4	158	0	1	0	0	0	0	0	0	0	7078	1305	45	3		3	HDAC6	23	48674127	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	126953	48674127	106596433	653	133565											
OTUD5	55593	broad.mit.edu	37	chrX	48780529	48780529	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcctgttgggacactgcCagcaccgaagctaggatctc	10	12	1	0	rs138137225		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48780529	A	A	48780529	2	1	158	1	0	0	0	0	0	0	0	1	11409	581	21	2		2	OTUD5	23	48780529	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	106402	48780529	106490031	654	133566											
GRIPAP1	56850	broad.mit.edu	37	chrX	48847292	48847292	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatagacagaggtagaacaTctgccctgccttctggcatt	9	11	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48847292	A	A	48847292	1	1	158	0	1	0	0	0	0	0	0	0	6855	1450	50	5		5	GRIPAP1	23	48847292	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	66763	48847292	106423268	655	133567											
CCDC120	90060	broad.mit.edu	37	chrX	48919767	48919767	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttgtgtcactgccagaCtttgtccagccatcagccac	7	15	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48919767	A	A	48919767	1	1	158	0	1	0	0	0	0	0	0	0	2782	579	20	3		3	CCDC120	23	48919767	5'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	72475	48919767	106350793	656	133568											
GPKOW	27238	broad.mit.edu	37	chrX	48972658	48972658	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagggtcttccgtgatgaGgcagttccgttctgttgccc	13	11	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48972658	C	C	48972658	2	2	158	1	0	0	0	0	0	0	0	1	6678	987	35	4		4	GPKOW	23	48972658	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	52891	48972658	106297902	657	133569											
PRICKLE3	4007	broad.mit.edu	37	chrX	49034397	49034397	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgggcctcgtagcaggcGcagcagtgggggcggctctg	20	11	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49034397	T	T	49034397	4	4	158	1	0	0	0	0	0	1	0	0	12594	1079	38	3	959	3	PRICKLE3	23	49034397	Nonsense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	61739	49034397	106236163	658	133570											
CACNA1F	778	broad.mit.edu	37	chrX	49066292	49066292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcgccgcctctctaccCaccagcatggacttcccctc	5	22	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49066292	A	A	49066292	1	1	158	0	1	0	0	0	0	0	0	0	2569	609	21	2		2	CACNA1F	23	49066292	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	31895	49066292	106204268	659	133571											
AKAP4	8852	broad.mit.edu	37	chrX	49962337	49962337	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataatagcacctacctcagAgggttcttgtgaggattaac	10	8	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49962337	T	T	49962337	1	4	158	0	1	0	0	0	0	0	0	0	453	319	11	5		5	AKAP4	23	49962337	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	896045	49962337	105308223	660	133572											
GSPT2	23708	broad.mit.edu	37	chrX	51486783	51486783	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgggaccaggtggacatgGaatccccggggtcggccccg	17	13	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51486783	T	T	51486783	4	4	158	1	0	0	0	0	0	1	0	0	6893	1175	41	3	63	3	GSPT2	23	51486783	Nonsense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	1524446	51486783	103783777	661	133573											
RIBC1	158787	broad.mit.edu	37	chrX	53458022	53458022	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaatgctgcatactccCaccttctaacctaggtaata	5	11	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53458022	T	T	53458022	1	4	158	0	1	0	0	0	0	0	0	0	13461	609	21	4		4	RIBC1	23	53458022	3'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	1971239	53458022	101812538	662	133574											
TRO	7216	broad.mit.edu	37	chrX	54949157	54949157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacccaccagttgtcaaCcggcctaagaaaagcaagac	9	12	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54949157	A	A	54949157	3	1	158	1	0	0	0	0	1	0	0	0	16699	506	18	3	198	3	TRO	23	54949157	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1491135	54949157	100321403	663	133575											
PAGE5	90737	broad.mit.edu	37	chrX	55249303	55249303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctaaagattctttgaaGgtagttcagaccccaaatgg	8	8	3	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55249303	T	T	55249303	1	4	158	0	1	0	0	0	0	0	0	0	11487	1015	35	2		2	PAGE5	23	55249303	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	300146	55249303	100021257	664	133576											
MTMR8	55613	broad.mit.edu	37	chrX	63444664	63444664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatttagagccctgggacCtccaagccaggtggcctatg	13	11	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63444664	A	A	63444664	1	1	158	0	1	0	0	0	0	0	0	0	10043	696	24	2		2	MTMR8	23	63444664	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	8195361	63444664	91825896	665	133577											
MTMR8	55613	broad.mit.edu	37	chrX	63488738	63488738	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggctttttacttgatcCatctgagctcggaggcctcc	9	14	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63488738	T	T	63488738	3	4	158	1	0	0	0	0	1	0	0	0	10043	594	21	4	324	4	MTMR8	23	63488738	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	44074	63488738	91781822	666	133578											
VSIG4	11326	broad.mit.edu	37	chrX	65259825	65259825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccccaggagtagcaggcCcagtaagatccccatcacag	11	14	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65259825	A	A	65259825	3	1	158	1	0	0	0	0	1	0	0	0	17352	623	22	2	1219	2	VSIG4	23	65259825	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1771087	65259825	90010735	667	133579											
HEPH	9843	broad.mit.edu	37	chrX	65415023	65415023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccattcagcatgcagcccCatggggtcttttatgagaaa	10	10	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65415023	A	A	65415023	3	1	158	1	0	0	0	0	1	0	0	0	7121	594	21	2	1649	2	HEPH	23	65415023	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	155198	65415023	89855537	668	133580											
KIF4A	24137	broad.mit.edu	37	chrX	69622419	69622419	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttctttccctgaaggagTgctcagattgctgacctaca	9	10	2	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69622419	A	A	69622419	3	1	158	1	0	0	0	0	1	0	0	0	8373	1693	59	5	2579	5	KIF4A	23	69622419	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	4207396	69622419	85648141	669	133581											
FOXO4	4303	broad.mit.edu	37	chrX	70321152	70321152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctgtcagcaggagaaGggtgcttctccagctcccag	13	14	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70321152	T	T	70321152	3	4	158	1	0	0	0	0	1	0	0	0	6085	1000	35	2	1078	2	FOXO4	23	70321152	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	698733	70321152	84949408	670	133582											
MED12	9968	broad.mit.edu	37	chrX	70341755	70341755	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataggggtaattccaaatTggatgtgggagtaggtgctg	16	3	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70341755	G	G	70341755	1	3	158	0	1	0	0	0	0	0	0	0	9521	1827	63	5		5	MED12	23	70341755	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	20603	70341755	84928805	671	133583											
TAF1	6872	broad.mit.edu	37	chrX	70617378	70617378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcttgctctgcggcccaGgtggagtgcagcggcgtgat	17	10	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70617378	T	T	70617378	1	4	158	0	1	0	0	0	0	0	0	0	15632	1015	35	2		2	TAF1	23	70617378	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	275623	70617378	84653182	672	133584											
PHKA1	5255	broad.mit.edu	37	chrX	71804080	71804080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatcagtcacataaatgtGcaagaaagagactcttacct	7	8	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71804080	T	T	71804080	1	4	158	0	1	0	0	0	0	0	0	0	11938	1334	46	3		3	PHKA1	23	71804080	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1186702	71804080	83466480	673	133585											
TAF9B	51616	broad.mit.edu	37	chrX	77393166	77393166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttaatctactatactaGctacaggaatttgcttttca	4	9	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77393166	T	T	77393166	1	4	158	0	1	0	0	0	0	0	0	0	15655	986	34	3		3	TAF9B	23	77393166	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	5589086	77393166	77877394	674	133586											
P2RY10	27334	broad.mit.edu	37	chrX	78216792	78216792	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatctgcttcactcccTatcatattaactttattttt	1	11	5	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78216792	C	C	78216792	3	2	158	1	0	0	0	0	1	0	0	0	11441	1522	53	5	777	5	P2RY10	23	78216792	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	823626	78216792	77053768	675	133587											
GPR174	84636	broad.mit.edu	37	chrX	78426678	78426678	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacgagctgtgatatttatGataaacttagccattgctga	8	6	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78426678	C	C	78426678	3	2	158	1	0	0	0	0	1	0	0	0	6737	1290	45	4	176	4	GPR174	23	78426678	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	209886	78426678	76843882	676	133588											
TBX22	50945	broad.mit.edu	37	chrX	79281068	79281068	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagctcccagctttggcctGctgcacctaatgccacagca	8	16	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79281068	C	C	79281068	1	2	158	0	1	0	0	0	0	0	0	0	15780	1334	46	4		4	TBX22	23	79281068	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	854390	79281068	75989492	677	133589											
SH3BGRL	6451	broad.mit.edu	37	chrX	80552635	80552635	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtagtctgactaaaatacAcatgggtgtctgctctgtga	10	7	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80552635	G	G	80552635	1	3	158	0	1	0	0	0	0	0	0	0	14354	174	6	5		5	SH3BGRL	23	80552635	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1271567	80552635	74717925	678	133590											
CHM	1121	broad.mit.edu	37	chrX	85213879	85213879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtacctgttccactcgtCcttctcgaaatgcaagaatc	6	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85213879	A	A	85213879	3	1	158	1	0	0	0	0	1	0	0	0	3381	855	30	3	1195	3	CHM	23	85213879	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	4661244	85213879	70056681	679	133591											
KLHL4	56062	broad.mit.edu	37	chrX	86869645	86869645	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattattagtagtagtagtAgttattattgctactaatac	6	3	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86869645	G	G	86869645	1	3	158	0	1	0	0	0	0	0	0	0	8462	435	15	5		5	KLHL4	23	86869645	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1655766	86869645	68400915	680	133592											
NXF2B	728343	broad.mit.edu	37	chrX	101576162	101576162	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtgtccccccgccgccAccccccccccacacacacat	4	24	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101576162	C	C	101576162	1	2	158	0	1	0	0	0	0	0	0	0	10879	174	6	5		5	NXF2B	23	101576162	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	14706517	101576162	53694398	681	133593											
NXF3	56000	broad.mit.edu	37	chrX	102338042	102338042	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaggctctgaagttgaGgtggtgaagggggcaatagg	18	4	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102338042	C	C	102338042	1	2	158	0	1	0	0	0	0	0	0	0	10880	1015	35	4		4	NXF3	23	102338042	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	761880	102338042	52932518	682	133594											
TCEAL5	340543	broad.mit.edu	37	chrX	102529697	102529697	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatgttcacacaagccaacCttacagaaacttccacaggt	5	13	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102529697	G	G	102529697	1	3	158	0	1	0	0	0	0	0	0	0	15796	696	24	4		4	TCEAL5	23	102529697	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	191655	102529697	52740863	683	133595											
NGFRAP1	27018	broad.mit.edu	37	chrX	102632353	102632353	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcagagcaccaagcattcAgtctctctccttgcctttgt	8	13	4	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102632353	T	T	102632353	1	4	158	0	1	0	0	0	0	0	0	0	10492	203	7	5		5	NGFRAP1	23	102632353	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	102656	102632353	52638207	684	133596											
GLRA4	441509	broad.mit.edu	37	chrX	102962477	102962477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaacggcagaatttgagGtcaaagctcaaaggcagagg	13	6	2	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102962477	T	T	102962477	1	4	158	0	1	0	0	0	0	0	0	0	6521	1276	44	3		3	GLRA4	23	102962477	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	330124	102962477	52308083	685	133597											
NRK	203447	broad.mit.edu	37	chrX	105167150	105167150	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaaatatcaccccctgTatacttgacaaacgaatggg	8	9	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105167150	A	A	105167150	3	1	158	1	0	0	0	0	1	0	0	0	10750	1638	57	5	2721	5	NRK	23	105167150	Missense_Mutation	SNP	T	TCGA-50-5931-01A-11D-1753-08	2204673	105167150	50103410	686	133598											
CXorf41	139212	broad.mit.edu	37	chrX	106459799	106459799	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattaaagtggaaagctccAtgagtttttttatggaaatc	8	4	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106459799	G	G	106459799	1	3	158	0	1	0	0	0	0	0	0	0	4143	232	8	5		5	CXorf41	23	106459799	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	1292649	106459799	48810761	687	133599											
COL4A5	1287	broad.mit.edu	37	chrX	107923988	107923988	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaggattcccaggtatttGaagggatttttgtggtttcc	11	7	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107923988	T	T	107923988	1	4	158	0	1	0	0	0	0	0	0	0	3726	1305	45	3		3	COL4A5	23	107923988	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	1464189	107923988	47346572	688	133600											
CHRDL1	91851	broad.mit.edu	37	chrX	109924711	109924711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgttgtcttgctcaccCtttcgaatagtccaaacgtg	7	10	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109924711	A	A	109924711	3	1	158	1	0	0	0	0	1	0	0	0	3404	695	24	2	233	2	CHRDL1	23	109924711	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	2000723	109924711	45345849	689	133601											
WDR44	54521	broad.mit.edu	37	chrX	117570726	117570726	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attatggcacatttctcgaaGagaatgcctttgctgttttc	8	8	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117570726	C	C	117570726	3	2	158	1	0	0	0	0	1	0	0	0	17423	942	33	4	1967	4	WDR44	23	117570726	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	7646015	117570726	37699834	690	133602											
KIAA1210	57481	broad.mit.edu	37	chrX	118242271	118242271	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctttctgactcagctgcCcatgcgctgaacaattccac	7	14	3	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118242271	T	T	118242271	1	4	158	0	1	0	0	0	0	0	0	0	8284	638	22	4		4	KIAA1210	23	118242271	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	671545	118242271	37028289	691	133603											
UPF3B	65109	broad.mit.edu	37	chrX	118972013	118972013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccgctctcatcttcagGtctgcatgaaaaacaaatct	6	12	6	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118972013	T	T	118972013	3	4	158	1	0	0	0	0	1	0	0	0	17132	1275	44	3	450	3	UPF3B	23	118972013	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	729742	118972013	36298547	692	133604											
GLUD2	2747	broad.mit.edu	37	chrX	120182428	120182428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcattttaggaatgacacCagggtttagagataaaacat	10	5	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120182428	A	A	120182428	3	1	158	1	0	0	0	0	1	0	0	0	6541	594	21	2	892	2	GLUD2	23	120182428	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	1210415	120182428	35088132	693	133605											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299865	125299865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggctcccgcctcgaccgCgggcgctttccgtttcctgc	11	20	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299865	A	A	125299865	3	1	158	1	0	0	0	0	1	0	0	0	4298	768	27	3	1352	3	DCAF12L2	23	125299865	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	5117437	125299865	29970695	694	133606											
UTP14A	10813	broad.mit.edu	37	chrX	129059189	129059189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgagcagagccagggtGgtgggccattgttcagaaag	17	7	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129059189	T	T	129059189	1	4	158	0	1	0	0	0	0	0	0	0	17222	1363	47	2		2	UTP14A	23	129059189	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	3759324	129059189	26211371	695	133607											
BCORL1	63035	broad.mit.edu	37	chrX	129148566	129148566	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcttaagtcaccgccacaGctggaacgagagatggcctc	10	14	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129148566	C	C	129148566	3	2	158	1	0	0	0	0	1	0	0	0	1392	962	34	4	1828	4	BCORL1	23	129148566	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	89377	129148566	26121994	696	133608											
RAB33A	9363	broad.mit.edu	37	chrX	129306210	129306210	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccttccgcttctgcggGggtaccttcccagacaagac	10	15	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129306210	T	T	129306210	2	4	158	1	0	0	0	0	0	0	0	1	13030	1219	43	2		2	RAB33A	23	129306210	Silent	SNP	G	TCGA-50-5931-01A-11D-1753-08	157644	129306210	25964350	697	133609											
RAP2C	57826	broad.mit.edu	37	chrX	131351358	131351358	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccccgctagctgtggcgCggctagacgaggcggaaggt	16	12	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131351358	T	T	131351358	1	4	158	0	1	0	0	0	0	0	0	0	13150	783	27	4		4	RAP2C	23	131351358	5'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	2045148	131351358	23919202	698	133610											
CXorf48	54967	broad.mit.edu	37	chrX	134304901	134304901	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggagccaccgtcacgtGcagtacccacccgagttaca	10	14	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134304901	A	A	134304901	1	1	158	0	1	0	0	0	0	0	0	0	4144	1334	46	4		4	CXorf48	23	134304901	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	2953543	134304901	20965659	699	133611											
ZNF75D	7626	broad.mit.edu	37	chrX	134427710	134427710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattccaccaggaccagagcCtgtttgacattctgtggatg	10	10	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134427710	A	A	134427710	3	1	158	1	0	0	0	0	1	0	0	0	18263	680	24	2	1195	2	ZNF75D	23	134427710	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	122809	134427710	20842850	700	133612											
ZNF449	203523	broad.mit.edu	37	chrX	134483291	134483291	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctgttttgagagttcaggAactctcaagggttggggttg	14	5	3	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134483291	T	T	134483291	1	4	158	0	1	0	0	0	0	0	0	0	18047	261	9	5		5	ZNF449	23	134483291	Intron	SNP	A	TCGA-50-5931-01A-11D-1753-08	55581	134483291	20787269	701	133613											
SLC9A6	10479	broad.mit.edu	37	chrX	135067822	135067822	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggagaggctagagccatggAcgaggagatcgtgtccgaga	17	8	0	4			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135067822	T	T	135067822	3	4	158	1	0	0	0	0	1	0	0	0	14832	275	10	5	163	5	SLC9A6	23	135067822	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	584531	135067822	20202738	702	133614											
SLC9A6	10479	broad.mit.edu	37	chrX	135080746	135080746	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaagcttaaaatactttgTggccttcaaattataatttt	4	5	1	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135080746	C	C	135080746	1	2	158	0	1	0	0	0	0	0	0	0	14832	1711	59	5		5	SLC9A6	23	135080746	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	12924	135080746	20189814	703	133615											
VGLL1	51442	broad.mit.edu	37	chrX	135631064	135631064	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccagcaagacagatgCctagcccgtcctcaggaatc	8	16	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135631064	T	T	135631064	2	4	158	1	0	0	0	0	0	0	0	1	17285	747	26	4		4	VGLL1	23	135631064	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	550318	135631064	19639496	704	133616											
F9	2158	broad.mit.edu	37	chrX	138642899	138642899	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttaattttgttttcacaGgttgttttgaatggtaaagt	9	3	2	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138642899	T	T	138642899	5	4	158	1	0	0	0	0	0	0	1	0	5397	1014	35	2	749	2	F9	23	138642899	Splice_Site	SNP	G	TCGA-50-5931-01A-11D-1753-08	3011835	138642899	16627661	705	133617											
MCF2	4168	broad.mit.edu	37	chrX	138689898	138689898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaaactggaggatggaCcagaacttctcttctcctga	9	11	2	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138689898	A	A	138689898	3	1	158	1	0	0	0	0	1	0	0	0	9471	507	18	3	1419	3	MCF2	23	138689898	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	46999	138689898	16580662	706	133618											
ATP11C	286410	broad.mit.edu	37	chrX	138880430	138880430	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaattgtggcgcatactaActtttcaacagcagaacgtt	7	8	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138880430	G	G	138880430	5	3	158	1	0	0	0	0	0	0	1	0	1125	57	2	5	2677	5	ATP11C	23	138880430	Splice_Site	SNP	A	TCGA-50-5931-01A-11D-1753-08	190532	138880430	16390130	707	133619											
FMR1NB	158521	broad.mit.edu	37	chrX	147106586	147106586	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaatctctgattcttgttaGctttatatttctaccatcat	3	9	5	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147106586	A	A	147106586	1	1	158	0	1	0	0	0	0	0	0	0	6019	986	34	4		4	FMR1NB	23	147106586	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	8226156	147106586	8163974	708	133620											
AFF2	2334	broad.mit.edu	37	chrX	148048193	148048193	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttatcctcaagctgtgtGcattgttttctttctttttt	5	7	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148048193	T	T	148048193	1	4	158	0	1	0	0	0	0	0	0	0	357	1334	46	3		3	AFF2	23	148048193	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	941607	148048193	7222367	709	133621											
TMEM185A	84548	broad.mit.edu	37	chrX	148693003	148693003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcgtgcccagactccagttCcaactgaggctccaacaatg	8	14	0	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148693003	A	A	148693003	3	1	158	1	0	0	0	0	1	0	0	0	16230	855	30	3	894	3	TMEM185A	23	148693003	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	644810	148693003	6577557	710	133622											
FATE1	89885	broad.mit.edu	37	chrX	150891306	150891306	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctttccccaggccgccaCtgcccttgcccctttcatct	5	21	3	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150891306	A	A	150891306	1	1	158	0	1	0	0	0	0	0	0	0	5750	580	20	3		3	FATE1	23	150891306	3'UTR	SNP	C	TCGA-50-5931-01A-11D-1753-08	2198303	150891306	4379254	711	133623											
ATP2B3	492	broad.mit.edu	37	chrX	152825273	152825273	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctggcgacggagccaccCacagagtcgctgctgctgcg	14	16	0	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152825273	A	A	152825273	2	1	158	1	0	0	0	0	0	0	0	1	1145	581	21	2		2	ATP2B3	23	152825273	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	1933967	152825273	2445287	712	133624											
SLC6A8	6535	broad.mit.edu	37	chrX	152958790	152958790	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccctcacagccctgggcAgctacaaccgcttcaacaac	9	17	2	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152958790	T	T	152958790	3	4	158	1	0	0	0	0	1	0	0	0	14804	188	7	5	1007	5	SLC6A8	23	152958790	Missense_Mutation	SNP	A	TCGA-50-5931-01A-11D-1753-08	133517	152958790	2311770	713	133625											
ABCD1	215	broad.mit.edu	37	chrX	152991456	152991456	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagcctggccctcggcCatcgccggcctcgtggtgtt	14	16	0	0			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152991456	T	T	152991456	2	4	158	1	0	0	0	0	0	0	0	1	60	581	21	4		4	ABCD1	23	152991456	Silent	SNP	C	TCGA-50-5931-01A-11D-1753-08	32666	152991456	2279104	714	133626											
FLNA	2316	broad.mit.edu	37	chrX	153582821	153582821	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggctggtcacatccagccCattgacacccaccaggggcc	10	17	1	1			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153582821	G	G	153582821	3	3	158	1	0	0	0	0	1	0	0	0	5991	594	21	4	2663	4	FLNA	23	153582821	Missense_Mutation	SNP	C	TCGA-50-5931-01A-11D-1753-08	591365	153582821	1687739	715	133627											
FLNA	2316	broad.mit.edu	37	chrX	153596271	153596271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgccagtcccggctgaaGttggtgatgggcagctgcgg	16	11	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153596271	T	T	153596271	3	4	158	1	0	0	0	0	1	0	0	0	5991	1020	36	3	7566	3	FLNA	23	153596271	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	13450	153596271	1674289	716	133628											
GDI1	2664	broad.mit.edu	37	chrX	153667324	153667324	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctctggagagagccgtgCtgatgttgcccttgtgcacc	13	12	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153667324	A	A	153667324	1	1	158	0	1	0	0	0	0	0	0	0	6384	812	28	3		3	GDI1	23	153667324	Intron	SNP	C	TCGA-50-5931-01A-11D-1753-08	71053	153667324	1603236	717	133629											
DKC1	1736	broad.mit.edu	37	chrX	154004926	154004926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaggtttacagaactttGtgtcacatgcagcatttaac	8	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154004926	T	T	154004926	1	4	158	0	1	0	0	0	0	0	0	0	4582	1392	48	3		3	DKC1	23	154004926	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	337602	154004926	1265634	718	133630											
MPP1	4354	broad.mit.edu	37	chrX	154014797	154014797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagggaggtaagaatggtGggggagcacccaagaaagag	17	5	0	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154014797	T	T	154014797	1	4	158	0	1	0	0	0	0	0	0	0	9827	1363	47	2		2	MPP1	23	154014797	Intron	SNP	G	TCGA-50-5931-01A-11D-1753-08	9871	154014797	1255763	719	133631											
F8	2157	broad.mit.edu	37	chrX	154128268	154128268	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagattaaattcagctgggtTagtcctagacacttgagaat	10	6	1	3			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154128268	A	A	154128268	1	1	158	0	1	0	0	0	0	0	0	0	5393	1769	61	5		5	F8	23	154128268	Intron	SNP	T	TCGA-50-5931-01A-11D-1753-08	113471	154128268	1142292	720	133632											
F8	2157	broad.mit.edu	37	chrX	154157090	154157090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcgtttcaagactggtgGgttttgagagcacagccttt	13	7	1	2			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154157090	T	T	154157090	3	4	158	1	0	0	0	0	1	0	0	0	5393	1232	43	2	2160	2	F8	23	154157090	Missense_Mutation	SNP	G	TCGA-50-5931-01A-11D-1753-08	28822	154157090	1113470	721	133633											
VWA1	64856	broad.mit.edu	37	chr1	1372746	1372746	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcattgtcagcaccggCcgaggcaacttcctggagct	12	12	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1372746	A	A	1372746	2	1	159	1	0	0	0	0	0	0	0	1	17365	739	26	3		3	VWA1	1	1372746	Silent	SNP	C	TCGA-50-5932-01A-11D-1753-08		1372746	247877875	1	133634											
C1orf94	84970	broad.mit.edu	37	chr1	34666416	34666416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaaaagggtcaagggagCctctttctcagccagtggcc	11	12	3	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34666416	A	A	34666416	3	1	159	1	0	0	0	0	1	0	0	0	2093	738	26	3	1063	3	C1orf94	1	34666416	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	33293670	34666416	214584205	2	133635											
TMEM53	79639	broad.mit.edu	37	chr1	45120854	45120854	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagaccatgtgccacgGggctgtgtatcggattacga	14	8	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45120854	A	A	45120854	3	1	159	1	0	0	0	0	1	0	0	0	16302	1232	43	4	626	4	TMEM53	1	45120854	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	10454438	45120854	204129767	3	133636											
SPATA6	54558	broad.mit.edu	37	chr1	48764544	48764556	+	Frame_Shift_Del	DEL	GCCACGTGGCTGC	-	-													ccgtcatccaaatggaaagtGccacgtggctgctgacatga							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48764556	-	-	48764544	7	5	159	1	0	1	0	1	0	0	0	0	15129	1306	46	0	162	0	SPATA6	1	48764544	Frame_Shift_Del	DEL	GCCACGTGGCTGC	TCGA-50-5932-01A-11D-1753-08	3643690	48764544	200486077	4	133637											
INADL	10207	broad.mit.edu	37	chr1	62235060	62235060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggaaaagttgatatcttcGtgaaggatgtccagccaggg	13	7	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62235060	T	T	62235060	3	4	159	1	0	0	0	0	1	0	0	0	7801	1145	40	3	504	3	INADL	1	62235060	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	13470516	62235060	187015561	5	133638											
ZRANB2	9406	broad.mit.edu	37	chr1	71546733	71546733	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcacaggaggaaaacgGgccggggactttcggcaact	14	10	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71546733	T	T	71546733	1	4	159	0	1	0	0	0	0	0	0	0	18352	1247	43	2		2	ZRANB2	1	71546733	5'UTR	SNP	G	TCGA-50-5932-01A-11D-1753-08	9311673	71546733	177703888	6	133639											
TNNI3K	51086	broad.mit.edu	37	chr1	74819610	74819610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtcttttgaaaattgGggagcagtttttcttttttc	9	5	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74819610	T	T	74819610	1	4	159	0	1	0	0	0	0	0	0	0	16452	1247	43	2		2	TNNI3K	1	74819610	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	3272877	74819610	174431011	7	133640											
EVI5	7813	broad.mit.edu	37	chr1	93202298	93202298	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catcagaatattctctttgaGgaagtaaaggtaaaacctgt	8	6	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93202298	C	C	93202298	1	2	159	0	1	0	0	0	0	0	0	0	5331	1015	35	4		4	EVI5	1	93202298	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	18382688	93202298	156048323	8	133641											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015767	145015767	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgataataccatccataatcCggaccaatccatgggtcata	6	11	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145015767	T	T	145015767	1	4	159	0	1	0	0	0	0	0	0	0	11737	667	23	4		4	PDE4DIP	1	145015767	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	51813469	145015767	104234854	9	133642											
SF3B4	10262	broad.mit.edu	37	chr1	149898433	149898433	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atggcgctcacccttggagtCcttcttgaaggcataagata	10	10	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149898433	G	G	149898433	3	3	159	1	0	0	0	0	1	0	0	0	14266	855	30	4	749	4	SF3B4	1	149898433	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	4882666	149898433	99352188	10	133643											
IL6R	3570	broad.mit.edu	37	chr1	154401899	154401899	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccggccgcccagctgggActgtgcacttgctggtggat	17	12	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154401899	T	T	154401899	3	4	159	1	0	0	0	0	1	0	0	0	7772	275	10	5	319	5	IL6R	1	154401899	Missense_Mutation	SNP	A	TCGA-50-5932-01A-11D-1753-08	4503466	154401899	94848722	11	133644											
DAP3	7818	broad.mit.edu	37	chr1	155671942	155671942	+	Intron	DEL	T	-	-													aaaaaaattgattctgcctaTaaaaaaaaaaaaaaaaaaag							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155671942	-	-	155671942	6	5	159	0	1	1	0	1	0	0	0	0	4267	1421	49	0		0	DAP3	1	155671942	Intron	DEL	T	TCGA-50-5932-01A-11D-1753-08	1270043	155671942	93578679	12	133645											
VHLL	391104	broad.mit.edu	37	chr1	156268923	156268923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtactcttctgggcctgCctcctgggtgcccgcctggg	14	15	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156268923	A	A	156268923	3	1	159	1	0	0	0	0	1	0	0	0	17290	739	26	3	365	3	VHLL	1	156268923	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	596981	156268923	92981698	13	133646											
KCNJ10	3766	broad.mit.edu	37	chr1	160011167	160011167	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagagaccagaggaatggggGagtgggaacaggtcatcaga	17	5	2	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160011167	A	A	160011167	1	1	159	0	1	0	0	0	0	0	0	0	8114	1189	41	4		4	KCNJ10	1	160011167	3'UTR	SNP	G	TCGA-50-5932-01A-11D-1753-08	3742244	160011167	89239454	14	133647											
TADA1	117143	broad.mit.edu	37	chr1	166838923	166838924	+	Intron	INS	-	A	A													aaaccaaaattttactttttINSaaaaagggaaaagactttac							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166838924	A	A	166838923	6	5	159	0	1	1	1	0	0	0	0	0	15628	1769	61	0		0	TADA1	1	166838923	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08	6827756	166838923	82411698	15	133648											
NME7	29922	broad.mit.edu	37	chr1	169279383	169279383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtttttatttataattccCaagcagcagtattctcaaca	4	9	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169279383	A	A	169279383	1	1	159	0	1	0	0	0	0	0	0	0	10591	609	21	2		2	NME7	1	169279383	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	2440460	169279383	79971238	16	133649											
TNN	63923	broad.mit.edu	37	chr1	175048765	175048765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgagaagcgctgtcccggcGactgcagcggccacggcttc	15	15	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175048765	T	T	175048765	3	4	159	1	0	0	0	0	1	0	0	0	16446	1058	37	3	712	3	TNN	1	175048765	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	5769382	175048765	74201856	17	133650											
ASTN1	460	broad.mit.edu	37	chr1	176998715	176998715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacctcttcgccttccccCgcctccctcactcccagatc	3	23	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176998715	A	A	176998715	1	1	159	0	1	0	0	0	0	0	0	0	1068	667	23	1		1	ASTN1	1	176998715	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	1949950	176998715	72251906	18	133651											
F13B	2165	broad.mit.edu	37	chr1	197029965	197029965	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgagcatgacaacttataTacacttctctatgagaaaaa	5	7	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197029965	C	C	197029965	1	2	159	0	1	0	0	0	0	0	0	0	5384	1421	49	5		5	F13B	1	197029965	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	20031250	197029965	52220656	19	133652											
CNTN2	6900	broad.mit.edu	37	chr1	205039502	205039502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggttgggggctgctctgCaggacacaggggggccctgg	19	11	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205039502	A	A	205039502	1	1	159	0	1	0	0	0	0	0	0	0	3673	725	25	3		3	CNTN2	1	205039502	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	8009537	205039502	44211119	20	133653											
MIA3	375056	broad.mit.edu	37	chr1	222825234	222825234	+	Intron	DEL	G	-	-													atggctctgggacatactttGttgatgtttcttcttcttag							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	222825234	-	-	222825234	6	5	159	0	1	1	0	1	0	0	0	0	9658	1392	48	0		0	MIA3	1	222825234	Intron	DEL	G	TCGA-50-5932-01A-11D-1753-08	17785732	222825234	26425387	21	133654											
C1orf58	148362	broad.mit.edu	37	chr1	222902905	222902905	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgatagatacataaaacaAtaggggaaagcatcttgaag	9	5	2	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222902905	G	G	222902905	1	3	159	0	1	0	0	0	0	0	0	0	2072	116	4	5		5	C1orf58	1	222902905	Intron	SNP	A	TCGA-50-5932-01A-11D-1753-08	77671	222902905	26347716	22	133655											
GNG4	2786	broad.mit.edu	37	chr1	235715664	235715664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgcacggcctacaacAtggtcatgcccaggctggag	13	11	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235715664	G	G	235715664	1	3	159	0	1	0	0	0	0	0	0	0	6593	232	8	5		5	GNG4	1	235715664	Intron	SNP	A	TCGA-50-5932-01A-11D-1753-08	12812759	235715664	13534957	23	133656											
ERO1LB	56605	broad.mit.edu	37	chr1	236415435	236415436	+	Intron	INS	-	T	T													aaatttttaagtgatctttaINSttttttttggaatttcttca							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236415436	T	T	236415435	6	5	159	0	1	1	1	0	0	0	0	0	5282	464	16	0		0	ERO1LB	1	236415435	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08	699771	236415435	12835186	24	133657											
RYR2	6262	broad.mit.edu	37	chr1	237777543	237777543	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgctggctactatgacctGctgattgacatccacctgag	10	12	0	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237777543	T	T	237777543	2	4	159	1	0	0	0	0	0	0	0	1	13880	1306	46	3		3	RYR2	1	237777543	Silent	SNP	G	TCGA-50-5932-01A-11D-1753-08	1362108	237777543	11473078	25	133658											
OR2L13	284521	broad.mit.edu	37	chr1	248167198	248167198	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctactatacaccttttgtcTacacctatctacgtccaaga	3	13	3	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248167198	A	A	248167198	1	1	159	0	1	0	0	0	0	0	0	0	11100	1537	53	5		5	OR2L13	1	248167198	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	10389655	248167198	1083423	26	133659											
PXDN	7837	broad.mit.edu	37	chr2	1652105	1652105	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgccaggtccagagccacCgtgtgtgccatggagaacag	14	13	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1652105	T	T	1652105	2	4	159	1	0	0	0	0	0	0	0	1	12955	639	23	4		4	PXDN	2	1652105	Silent	SNP	C	TCGA-50-5932-01A-11D-1753-08		1652105	241547268	27	133660											
APOB	338	broad.mit.edu	37	chr2	21234296	21234296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcttcaggggttctagcCgtagtttcccattgttggtg	13	9	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21234296	A	A	21234296	3	1	159	1	0	0	0	0	1	0	0	0	787	652	23	1	8263	1	APOB	2	21234296	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	19582191	21234296	221965077	28	133661											
PLB1	151056	broad.mit.edu	37	chr2	28748151	28748151	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctccagacccagggacGggcgatctggagaagcaaga	14	12	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28748151	A	A	28748151	2	1	159	1	0	0	0	0	0	0	0	1	12119	1103	39	4		4	PLB1	2	28748151	Silent	SNP	G	TCGA-50-5932-01A-11D-1753-08	7513855	28748151	214451222	29	133662											
CCT4	10575	broad.mit.edu	37	chr2	62095865	62095865	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataagagaaaaacttagattTcaaaacctgtaatgacagaa	6	5	1	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62095865	A	A	62095865	1	1	159	0	1	0	0	0	0	0	0	0	2985	1798	62	5		5	CCT4	2	62095865	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	33347714	62095865	181103508	30	133663											
SNRNP27	11017	broad.mit.edu	37	chr2	70130403	70130403	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catagcccccattattatgtTtgaactaataaatcagtttt	4	8	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70130403	G	G	70130403	1	3	159	0	1	0	0	0	0	0	0	0	14968	1856	64	5		5	SNRNP27	2	70130403	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	8034538	70130403	173068970	31	133664											
ZEB2	9839	broad.mit.edu	37	chr2	145162637	145162637	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtttccgggccttcttcCtaggatcccaagtccatctc	8	14	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145162637	A	A	145162637	1	1	159	0	1	0	0	0	0	0	0	0	17750	696	24	2		2	ZEB2	2	145162637	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	75032234	145162637	98036736	32	133665											
FAP	2191	broad.mit.edu	37	chr2	163040047	163040047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttacttcattacacaacCatatttaatccaaagattta	1	9	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163040047	A	A	163040047	1	1	159	0	1	0	0	0	0	0	0	0	5730	609	21	2		2	FAP	2	163040047	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	17877410	163040047	80159326	33	133666											
SCN3A	6328	broad.mit.edu	37	chr2	166032577	166032578	+	Intron	INS	-	AA	AA													atgctgtatataaggcccagINSaaaagtatattacagttaag							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	166032578	AA	AA	166032577	6	5	159	0	1	1	1	0	0	0	0	0	14031	957	33	0		0	SCN3A	2	166032577	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08	2992530	166032577	77166796	34	133667											
TTC21B	79809	broad.mit.edu	37	chr2	166747433	166747433	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccattgagaaaaatcttgGgacatcctcgagttttccac	8	10	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166747433	A	A	166747433	3	1	159	1	0	0	0	0	1	0	0	0	16814	1232	43	4	962	4	TTC21B	2	166747433	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	714856	166747433	76451940	35	133668											
TLK1	9874	broad.mit.edu	37	chr2	171854326	171854337	+	Splice_Site	DEL	GTAAATACCTGT	-	-													aactacaaaacactcaggagGtaaatacctgtaagttttgt							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171854337	-	-	171854326	8	5	159	1	0	1	0	1	0	0	1	0	16066	1261	44	0	400	0	TLK1	2	171854326	Splice_Site	DEL	GTAAATACCTGT	TCGA-50-5932-01A-11D-1753-08	5106893	171854326	71345047	36	133669											
KIAA1715	80856	broad.mit.edu	37	chr2	176812423	176812423	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagttcgctgacgaatctctGagaagagtaagtacatacta	9	8	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176812423	A	A	176812423	1	1	159	0	1	0	0	0	0	0	0	0	8324	1305	45	4		4	KIAA1715	2	176812423	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	4958097	176812423	66386950	37	133670											
DNAJC10	54431	broad.mit.edu	37	chr2	183597152	183597152	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaacatggtaatttgggGgaaaggcaaatgcaagtatt	12	3	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183597152	A	A	183597152	1	1	159	0	1	0	0	0	0	0	0	0	4669	1247	43	4		4	DNAJC10	2	183597152	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	6784729	183597152	59602221	38	133671											
CPS1	1373	broad.mit.edu	37	chr2	211533037	211533037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtggctgtgtgcttgccCatggtcatacatggtgagtg	14	7	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211533037	A	A	211533037	1	1	159	0	1	0	0	0	0	0	0	0	3855	609	21	2		2	CPS1	2	211533037	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	27935885	211533037	31666336	39	133672											
CYP27A1	1593	broad.mit.edu	37	chr2	219647313	219647313	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaactggaaatcagtagggaGaatgggcaaagtgcagacag	14	5	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219647313	A	A	219647313	1	1	159	0	1	0	0	0	0	0	0	0	4191	957	33	4		4	CYP27A1	2	219647313	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	8114276	219647313	23552060	40	133673											
CHRND	1144	broad.mit.edu	37	chr2	233396385	233396385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagtacttggcccggcGcaaaagctcaccactgtaat	11	11	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233396385	T	T	233396385	1	4	159	0	1	0	0	0	0	0	0	0	3425	1102	38	3		3	CHRND	2	233396385	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	13749072	233396385	9802988	41	133674											
AQP12B	653437	broad.mit.edu	37	chr2	241621974	241621975	+	Missense_Mutation	DNP	GG	TT	TT													actcctgcagggacacggtgGggttggccgaggccccgtcc							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	241621975	TT	TT	241621974	3	4	159	1	0	0	0	0	1	0	0	0	827	1232	43	2	654	2	AQP12B	2	241621974	Missense_Mutation	DNP	GG	TCGA-50-5932-01A-11D-1753-08	8225589	241621974	1577399	42	133675											
SNED1	25992	broad.mit.edu	37	chr2	242009519	242009519	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctacacggtgcgcgacctGctgccgggacggcggtacca	14	15	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242009519	A	A	242009519	2	1	159	1	0	0	0	0	0	0	0	1	14959	1306	46	4		4	SNED1	2	242009519	Silent	SNP	G	TCGA-50-5932-01A-11D-1753-08	387545	242009519	1189854	43	133676											
OXTR	5021	broad.mit.edu	37	chr3	8809379	8809379	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcggcgcgctggccacCaggcagccgagccacgtggc	15	17	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8809379	T	T	8809379	2	4	159	1	0	0	0	0	0	0	0	1	11432	581	21	4		4	OXTR	3	8809379	Silent	SNP	C	TCGA-50-5932-01A-11D-1753-08		8809379	189213051	44	133677											
MTMR14	64419	broad.mit.edu	37	chr3	9704014	9704014	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgcagcaagatggcccgGtgcagaggacggtttgtctg	15	11	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9704014	T	T	9704014	2	4	159	1	0	0	0	0	0	0	0	1	10036	1248	44	3		3	MTMR14	3	9704014	Silent	SNP	G	TCGA-50-5932-01A-11D-1753-08	894635	9704014	188318416	45	133678											
PTPRG	5793	broad.mit.edu	37	chr3	62189079	62189079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcactgtgtggcccacgcGcctcccgacggccgcctcag	12	19	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62189079	T	T	62189079	3	4	159	1	0	0	0	0	1	0	0	0	12910	1087	38	3	1656	3	PTPRG	3	62189079	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	52485065	62189079	135833351	46	133679											
EPHA3	2042	broad.mit.edu	37	chr3	89448468	89448468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttctgacctcaaagCaggaacaagaaacaagttat	6	7	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89448468	A	A	89448468	3	1	159	1	0	0	0	0	1	0	0	0	5210	724	25	3	1458	3	EPHA3	3	89448468	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	27259389	89448468	108573962	47	133680											
AP2M1	1173	broad.mit.edu	37	chr3	183898443	183898443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcctccagcatcaggtaaGctcttccctcagcttccacc	7	18	3	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183898443	T	T	183898443	1	4	159	0	1	0	0	0	0	0	0	0	744	986	34	3		3	AP2M1	3	183898443	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	94449975	183898443	14123987	48	133681											
POLN	353497	broad.mit.edu	37	chr4	2209684	2209684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttttatggtgtcaagaCagcaaataaaaacatcactg	6	8	3	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2209684	A	A	2209684	1	1	159	0	1	0	0	0	0	0	0	0	12302	493	17	3		3	POLN	4	2209684	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08		2209684	188944592	49	133682											
FAM193A	8603	broad.mit.edu	37	chr4	2695633	2695633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgactggggacgtgggagCactttggaaaatgggtgtta	16	6	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2695633	A	A	2695633	1	1	159	0	1	0	0	0	0	0	0	0	5571	725	25	3		3	FAM193A	4	2695633	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	485949	2695633	188458643	50	133683											
TBC1D19	55296	broad.mit.edu	37	chr4	26622430	26622430	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatactgggtaagaaccaCtaaatttatgttaatagtat	7	4	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26622430	G	G	26622430	1	3	159	0	1	0	0	0	0	0	0	0	15726	580	20	4		4	TBC1D19	4	26622430	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	23926797	26622430	164531846	51	133684											
ARAP2	116984	broad.mit.edu	37	chr4	36160539	36160539	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctaaaatgtaaacaattttCcttttgtttataatatgtac	3	5	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36160539	G	G	36160539	1	3	159	0	1	0	0	0	0	0	0	0	841	870	30	4		4	ARAP2	4	36160539	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	9538109	36160539	154993737	52	133685											
LIMCH1	22998	broad.mit.edu	37	chr4	41687893	41687893	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggattcccttttttaaaaaTtcatttagttagaagggaga	9	4	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41687893	A	A	41687893	1	1	159	0	1	0	0	0	0	0	0	0	8869	1508	52	5		5	LIMCH1	4	41687893	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	5527354	41687893	149466383	53	133686											
SPATA18	132671	broad.mit.edu	37	chr4	52943040	52943040	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccgctgtcaaggtcaggaGaccgtccccaaaccgctcca	9	17	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52943040	A	A	52943040	3	1	159	1	0	0	0	0	1	0	0	0	15119	942	33	4	880	4	SPATA18	4	52943040	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	11255147	52943040	138211236	54	133687											
KIT	3815	broad.mit.edu	37	chr4	55593344	55593344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtggtagagatcccatcCtgccaaagtttgtgattcca	10	10	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55593344	A	A	55593344	1	1	159	0	1	0	0	0	0	0	0	0	8400	696	24	2		2	KIT	4	55593344	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	2650304	55593344	135560932	55	133688											
UGT2B4	7363	broad.mit.edu	37	chr4	70361157	70361157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacatcaaatcttgactcCtgtagtttcttcataagttt	4	9	4	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70361157	A	A	70361157	3	1	159	1	0	0	0	0	1	0	0	0	17087	680	24	2	1187	2	UGT2B4	4	70361157	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	14767813	70361157	120793119	56	133689											
FRAS1	80144	broad.mit.edu	37	chr4	79428721	79428721	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggtgacaattctagacCaggaggcagcagggagcctc	13	12	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79428721	T	T	79428721	4	4	159	1	0	0	0	0	0	1	0	0	6102	595	21	4	9784	4	FRAS1	4	79428721	Nonsense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	9067564	79428721	111725555	57	133690											
WDFY3	23001	broad.mit.edu	37	chr4	85654502	85654502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaataaaaacttgaaagAgccattgtgatcattgaatt	8	4	1	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85654502	T	T	85654502	1	4	159	0	1	0	0	0	0	0	0	0	17397	319	11	5		5	WDFY3	4	85654502	Intron	SNP	A	TCGA-50-5932-01A-11D-1753-08	6225781	85654502	105499774	58	133691											
ANK2	287	broad.mit.edu	37	chr4	114095577	114095577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttttctcgcagtctgaCagcaatgcaagcttcctccg	7	12	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114095577	A	A	114095577	3	1	159	1	0	0	0	0	1	0	0	0	621	477	17	3	121	3	ANK2	4	114095577	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	28441075	114095577	77058699	59	133692											
ANK2	287	broad.mit.edu	37	chr4	114238920	114238920	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatgcctcctacctgagGgacagtgccgtgatggatga	13	11	0	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114238920	T	T	114238920	3	4	159	1	0	0	0	0	1	0	0	0	621	1223	43	2	2874	2	ANK2	4	114238920	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	143343	114238920	76915356	60	133693											
SPATA5	166378	broad.mit.edu	37	chr4	123855380	123855380	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcctcagagtgactctgacActgatgcccaaagaatggcc	11	12	2	5			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123855380	T	T	123855380	3	4	159	1	0	0	0	0	1	0	0	0	15127	159	6	5	652	5	SPATA5	4	123855380	Missense_Mutation	SNP	A	TCGA-50-5932-01A-11D-1753-08	9616460	123855380	67298896	61	133694											
SMARCA5	8467	broad.mit.edu	37	chr4	144445675	144445675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctttgagatctcctttgGttaatgttttggatttgtgt	10	6	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144445675	A	A	144445675	1	1	159	0	1	0	0	0	0	0	0	0	14885	1276	44	4		4	SMARCA5	4	144445675	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	20590295	144445675	46708601	62	133695											
TRIP13	9319	broad.mit.edu	37	chr5	908017	908017	+	Intron	DEL	G	-	-													gtgggcttgtggggacaactGgggcagcaggccacatcagg							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	908017	-	-	908017	6	5	159	0	1	1	0	1	0	0	0	0	16682	1363	47	0		0	TRIP13	5	908017	Intron	DEL	G	TCGA-50-5932-01A-11D-1753-08		908017	180007243	63	133696											
CTNND2	1501	broad.mit.edu	37	chr5	11082709	11082709	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaataaatgcacggcttctGtgtaagcataggctatgcat	9	8	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11082709	A	A	11082709	1	1	159	0	1	0	0	0	0	0	0	0	4054	1392	48	4		4	CTNND2	5	11082709	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	10174692	11082709	169832551	64	133697											
TRIO	7204	broad.mit.edu	37	chr5	14359507	14359507	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagaccccccacaacagctCcatcaaccacattgagacgg	6	17	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14359507	T	T	14359507	3	4	159	1	0	0	0	0	1	0	0	0	16677	855	30	4	2308	4	TRIO	5	14359507	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	3276798	14359507	166555753	65	133698											
CWC27	10283	broad.mit.edu	37	chr5	64267586	64267586	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagaagagaaaagcaaaagTatgaagctttgaggaagcaa	11	4	0	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64267586	A	A	64267586	3	1	159	1	0	0	0	0	1	0	0	0	4103	1638	57	5	1145	5	CWC27	5	64267586	Missense_Mutation	SNP	T	TCGA-50-5932-01A-11D-1753-08	49908079	64267586	116647674	66	133699											
GPR98	84059	broad.mit.edu	37	chr5	90020785	90020785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttactgtttaccgatggcaGgggatttttattccagttga	11	6	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90020785	T	T	90020785	3	4	159	1	0	0	0	0	1	0	0	0	6787	991	35	2	10067	2	GPR98	5	90020785	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	25753199	90020785	90894475	67	133700											
C5orf36	285600	broad.mit.edu	37	chr5	93928834	93928834	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caataccctggtgaatgtgtTatacatcacacaacagtttg	7	9	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93928834	G	G	93928834	1	3	159	0	1	0	0	0	0	0	0	0	2318	1769	61	5		5	C5orf36	5	93928834	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	3908049	93928834	86986426	68	133701											
PCDHGA3	56112	broad.mit.edu	37	chr5	140723683	140723683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacgctgtgcgaaacaggatCcggtcagatccgctactcgg	13	12	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140723683	A	A	140723683	3	1	159	1	0	0	0	0	1	0	0	0	11649	855	30	3	85	3	PCDHGA3	5	140723683	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	46794849	140723683	40191577	69	133702											
PPARGC1B	133522	broad.mit.edu	37	chr5	149219550	149219550	+	Intron	DEL	C	-	-													ctggagcagatccgcccccaCccccatggtatctcccgaga							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149219550	-	-	149219550	6	5	159	0	1	1	0	1	0	0	0	0	12397	522	18	0		0	PPARGC1B	5	149219550	Intron	DEL	C	TCGA-50-5932-01A-11D-1753-08	8495867	149219550	31695710	70	133703											
ADAM19	8728	broad.mit.edu	37	chr5	156847708	156847708	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctacaagagaaatgagacTctttgagtaccagagtgcag	10	8	1	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156847708	C	C	156847708	1	2	159	0	1	0	0	0	0	0	0	0	240	1566	54	5		5	ADAM19	5	156847708	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	7628158	156847708	24067552	71	133704											
FLT4	2324	broad.mit.edu	37	chr5	180053085	180053085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgccaggccgcccaccCgtgcgctctcccgtccctga	9	21	1	1	rs150471862		TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180053085	A	A	180053085	1	1	159	0	1	0	0	0	0	0	0	0	6002	667	23	1		1	FLT4	5	180053085	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	23205377	180053085	862175	72	133705											
HIST1H4J	8363	broad.mit.edu	37	chr6	27792201	27792201	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggccgcaccctctacgGtttcggtggttgagcgtccc	13	15	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27792201	A	A	27792201	3	1	159	1	0	0	0	0	1	0	0	0	7241	1261	44	4	301	4	HIST1H4J	6	27792201	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08		27792201	143322866	73	133706											
KIAA0240	23506	broad.mit.edu	37	chr6	42797677	42797677	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcggtgacaagcatgtcaGgacctagtcggttccctgct	11	12	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42797677	T	T	42797677	4	4	159	1	0	0	0	0	0	1	0	0	8234	1001	35	2	1620	2	KIAA0240	6	42797677	Nonsense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	15005476	42797677	128317390	74	133707											
RUNX2	860	broad.mit.edu	37	chr6	45480133	45480133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatcaccgatgtgcctaGgcgcatttcaggtaaagacc	10	12	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45480133	T	T	45480133	3	4	159	1	0	0	0	0	1	0	0	0	13859	1000	35	2	1048	2	RUNX2	6	45480133	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	2682456	45480133	125634934	75	133708											
CD109	135228	broad.mit.edu	37	chr6	74493584	74493584	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcttatcagtattacggtGacattaagctaatacagcgt	8	8	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74493584	C	C	74493584	1	2	159	0	1	0	0	0	0	0	0	0	2993	1305	45	4		4	CD109	6	74493584	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	29013451	74493584	96621483	76	133709											
ORC3L	23595	broad.mit.edu	37	chr6	88313275	88313275	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtatgtttgttcatgcatGcatctctgtgtatttcgttt	9	7	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88313275	C	C	88313275	1	2	159	0	1	0	0	0	0	0	0	0	11357	1334	46	4		4	ORC3L	6	88313275	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	13819691	88313275	82801792	77	133710											
EPHA7	2045	broad.mit.edu	37	chr6	93973490	93973490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtataatttcaagcatgatGcatgaggactttgttaatgc	10	5	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93973490	T	T	93973490	1	4	159	0	1	0	0	0	0	0	0	0	5214	1334	46	3		3	EPHA7	6	93973490	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	5660215	93973490	77141577	78	133711											
SERAC1	84947	broad.mit.edu	37	chr6	158565513	158565514	+	Intron	INS	-	AACTGA	AACTGA													tgacagatgtcataaagattINSaactgaacaaacaacttgaa							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AACTGA	158565514	AACTGA	AACTGA	158565513	6	5	159	0	1	1	1	0	0	0	0	0	14187	1769	61	0		0	SERAC1	6	158565513	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08	64592023	158565513	12549554	79	133712											
TAGAP	117289	broad.mit.edu	37	chr6	159456981	159456981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacggtcctcagcgggaGgagctcaggtctccctgggc	17	12	3	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159456981	T	T	159456981	3	4	159	1	0	0	0	0	1	0	0	0	15656	1000	35	2	125	2	TAGAP	6	159456981	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	891468	159456981	11658086	80	133713											
DAGLB	221955	broad.mit.edu	37	chr7	6505557	6505557	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatttaaaaagacaacatcCtgatccagaatgttattggc	6	7	0	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6505557	A	A	6505557	1	1	159	0	1	0	0	0	0	0	0	0	4260	696	24	2		2	DAGLB	7	6505557	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08		6505557	152633106	81	133714											
ITGB8	3696	broad.mit.edu	37	chr7	20418673	20418673	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttcttctattgaactaGgagccgaagctaattttatg	8	6	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20418673	T	T	20418673	5	4	159	1	0	0	0	0	0	0	1	0	7971	1014	35	2	402	2	ITGB8	7	20418673	Splice_Site	SNP	G	TCGA-50-5932-01A-11D-1753-08	13913116	20418673	138719990	82	133715											
ABCB5	340273	broad.mit.edu	37	chr7	20744513	20744513	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtgtctgtgcatatatgTgagctgtgctgagatgaccc	12	8	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20744513	A	A	20744513	1	1	159	0	1	0	0	0	0	0	0	0	44	1711	59	5		5	ABCB5	7	20744513	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	325840	20744513	138394150	83	133716											
PDE1C	5137	broad.mit.edu	37	chr7	31877567	31877567	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggccatcaccatttcaatTaccaaggttcgaaactccct	6	13	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31877567	A	A	31877567	2	1	159	1	0	0	0	0	0	0	0	1	11729	1741	61	5		5	PDE1C	7	31877567	Silent	SNP	T	TCGA-50-5932-01A-11D-1753-08	11133054	31877567	127261096	84	133717											
SEPT7	989	broad.mit.edu	37	chr7	35923396	35923397	+	Intron	INS	-	T	T													cagaaactatcgaaagtaaaINSttttttttttttttggctaa					rs35686699		TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35923397	T	T	35923396	6	5	159	0	1	1	1	0	0	0	0	0	14182	116	4	0		0	SEPT7	7	35923396	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08	4045829	35923396	123215267	85	133718											
PHKG1	5260	broad.mit.edu	37	chr7	56149703	56149703	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagaagggcggggagccGgccagcagcgtgtacatgat	17	10	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56149703	T	T	56149703	2	4	159	1	0	0	0	0	0	0	0	1	11941	1103	39	1		1	PHKG1	7	56149703	Silent	SNP	G	TCGA-50-5932-01A-11D-1753-08	20226307	56149703	102988960	86	133719											
HIP1	3092	broad.mit.edu	37	chr7	75183380	75183380	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggccccctgctcccctggtCcatgaacagcccctcatgcc	8	20	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75183380	A	A	75183380	1	1	159	0	1	0	0	0	0	0	0	0	7181	870	30	3		3	HIP1	7	75183380	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	19033677	75183380	83955283	87	133720											
PION	54103	broad.mit.edu	37	chr7	76950085	76950085	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtttgtagcttccagaatCctggtcatgatgtgaaaaac	9	8	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76950085	T	T	76950085	2	4	159	1	0	0	0	0	0	0	0	1	12029	854	30	4		4	PION	7	76950085	Silent	SNP	C	TCGA-50-5932-01A-11D-1753-08	1766705	76950085	82188578	88	133721											
HGF	3082	broad.mit.edu	37	chr7	81336755	81336755	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caattaatgcaaagcctgtgGctccatttgttaaaaataaa	6	7	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81336755	A	A	81336755	1	1	159	0	1	0	0	0	0	0	0	0	7152	1218	42	4		4	HGF	7	81336755	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	4386670	81336755	77801908	89	133722											
ZNF789	285989	broad.mit.edu	37	chr7	99077308	99077308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctcgtttgaggatgtgGcgatgtacttcaccagagag	13	8	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99077308	T	T	99077308	3	4	159	1	0	0	0	0	1	0	0	0	18289	1203	42	3	55	3	ZNF789	7	99077308	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	17740553	99077308	60061355	90	133723											
STAG3	10734	broad.mit.edu	37	chr7	99786261	99786261	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagcttttagaaggaggaaTtcagtctcttgggggtaaaa	13	4	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99786261	A	A	99786261	1	1	159	0	1	0	0	0	0	0	0	0	15362	1508	52	5		5	STAG3	7	99786261	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	708953	99786261	59352402	91	133724											
TRPV5	56302	broad.mit.edu	37	chr7	142627055	142627055	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcctcctgaccctccatcaCcccaccccaacccatccttc	1	24	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142627055	G	G	142627055	1	3	159	0	1	0	0	0	0	0	0	0	16724	522	18	4		4	TRPV5	7	142627055	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	42840794	142627055	16511608	92	133725											
MTMR7	9108	broad.mit.edu	37	chr8	17168856	17168856	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaagccttcccctttaatCttgctgattaaattaatctt	3	11	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17168856	G	G	17168856	1	3	159	0	1	0	0	0	0	0	0	0	10042	928	32	4		4	MTMR7	8	17168856	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08		17168856	129195166	93	133726											
SFTPC	6440	broad.mit.edu	37	chr8	22020323	22020327	+	Intron	DEL	CTGTC	-	-													gtgggatgggcgataggaaaCtgtccaaggggagtggaggg							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22020327	-	-	22020323	6	5	159	0	1	1	0	1	0	0	0	0	14305	580	20	0		0	SFTPC	8	22020323	Intron	DEL	CTGTC	TCGA-50-5932-01A-11D-1753-08	4851467	22020323	124343699	94	133727											
PTK2B	2185	broad.mit.edu	37	chr8	27293368	27293368	+	Intron	DEL	A	-	-													gccctgtgaaatgacatggcAaggactctggtgacaccaca							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27293368	-	-	27293368	6	5	159	0	1	1	0	1	0	0	0	0	12869	145	5	0		0	PTK2B	8	27293368	Intron	DEL	A	TCGA-50-5932-01A-11D-1753-08	5273045	27293368	119070654	95	133728											
TRPA1	8989	broad.mit.edu	37	chr8	72975820	72975820	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaagctggaagaaaagaCaaaatgaaaaatgacaccag	8	5	0	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72975820	T	T	72975820	1	4	159	0	1	0	0	0	0	0	0	0	16702	493	17	4		4	TRPA1	8	72975820	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	45682452	72975820	73388202	96	133729											
VPS13B	157680	broad.mit.edu	37	chr8	100108540	100108540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctttaaaataaaaatagGatgaccatgaaagctgtggt	8	4	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100108540	T	T	100108540	3	4	159	1	0	0	0	0	1	0	0	0	17317	1188	41	3	302	3	VPS13B	8	100108540	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	27132720	100108540	46255482	97	133730											
VPS13B	157680	broad.mit.edu	37	chr8	100204993	100204993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttaagtagtatgtttgcaTacatactttggatgtatacc	8	5	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100204993	A	A	100204993	1	1	159	0	1	0	0	0	0	0	0	0	17317	1421	49	5		5	VPS13B	8	100204993	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	96453	100204993	46159029	98	133731											
RIMS2	9699	broad.mit.edu	37	chr8	104928660	104928660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgatgaagtattagaatGgaatggaagactactgcaag	13	3	0	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104928660	T	T	104928660	3	4	159	1	0	0	0	0	1	0	0	0	13479	1357	47	2	2087	2	RIMS2	8	104928660	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	4723667	104928660	41435362	99	133732											
RIMS2	9699	broad.mit.edu	37	chr8	104987763	104987763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacttattttatttgtaGggtggctgtattagtcagtg	11	4	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104987763	T	T	104987763	1	4	159	0	1	0	0	0	0	0	0	0	13479	1015	35	2		2	RIMS2	8	104987763	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	59103	104987763	41376259	100	133733											
FAM135B	51059	broad.mit.edu	37	chr8	139155457	139155457	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtggcgcctactggggaTgtgcctacctctgatgttac	12	11	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139155457	A	A	139155457	1	1	159	0	1	0	0	0	0	0	0	0	5495	1479	51	5		5	FAM135B	8	139155457	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	34167694	139155457	7208565	101	133734											
PTPRD	5789	broad.mit.edu	37	chr9	8376557	8376557	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catttctcaaaagaagctttCtttaaacaatagagaaggga	7	6	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8376557	G	G	8376557	1	3	159	0	1	0	0	0	0	0	0	0	12907	928	32	4		4	PTPRD	9	8376557	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08		8376557	132836874	102	133735											
PTPRD	5789	broad.mit.edu	37	chr9	8521415	8521415	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatcttcaggtgtcagatCttctgcccccaacatccact	5	15	6	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8521415	T	T	8521415	3	4	159	1	0	0	0	0	1	0	0	0	12907	913	32	4	5091	4	PTPRD	9	8521415	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	144858	8521415	132692016	103	133736											
OR13D1	286365	broad.mit.edu	37	chr9	107457561	107457561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcttattctacggttcaGccctttttatgtacatgaaa	5	9	4	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107457561	T	T	107457561	3	4	159	1	0	0	0	0	1	0	0	0	11034	971	34	3	861	3	OR13D1	9	107457561	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	98936146	107457561	33755870	104	133737											
GAPVD1	26130	broad.mit.edu	37	chr9	128025911	128025911	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatccgtctcaactggaatTtggctgctgacccagcccca	8	14	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128025911	A	A	128025911	1	1	159	0	1	0	0	0	0	0	0	0	6301	1856	64	5		5	GAPVD1	9	128025911	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	20568350	128025911	13187520	105	133738											
CUBN	8029	broad.mit.edu	37	chr10	16990447	16990447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaccacatcccttttaaCcgctagagtcaggtgctagg	8	12	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16990447	A	A	16990447	1	1	159	0	1	0	0	0	0	0	0	0	4084	522	18	3		3	CUBN	10	16990447	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08		16990447	118544300	106	133739											
AGAP5	729092	broad.mit.edu	37	chr10	75457220	75457220	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcaaagtgggggatgccGtaaagggaaccttggggaca	16	7	1	0	rs76156147		TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75457220	A	A	75457220	1	1	159	0	1	0	0	0	0	0	0	0	371	1160	40	4		4	AGAP5	10	75457220	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	58466773	75457220	60077527	107	133740											
ABCC2	1244	broad.mit.edu	37	chr10	101560182	101560182	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaccgtgacacatatttGtggattggatatctctgtgc	11	7	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101560182	A	A	101560182	2	1	159	1	0	0	0	0	0	0	0	1	53	1368	48	4		4	ABCC2	10	101560182	Silent	SNP	G	TCGA-50-5932-01A-11D-1753-08	26102962	101560182	33974565	108	133741											
SEC31B	25956	broad.mit.edu	37	chr10	102265086	102265086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacaaaCacacacacacctatacatcc	0	19	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102265086	A	A	102265086	1	1	159	0	1	0	0	0	0	0	0	0	14112	493	17	3		3	SEC31B	10	102265086	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	704904	102265086	33269661	109	133742											
GRK5	2869	broad.mit.edu	37	chr10	121196346	121196346	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctccaccgtgagaacaccGtctaccggtgagtggaaggc	12	13	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121196346	A	A	121196346	3	1	159	1	0	0	0	0	1	0	0	0	6858	1145	40	4	956	4	GRK5	10	121196346	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	18931260	121196346	14338401	110	133743											
MKI67	4288	broad.mit.edu	37	chr10	129903806	129903806	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagatttgcaggctatttTggtagttttgtcatcagttg	12	4	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129903806	C	C	129903806	3	2	159	1	0	0	0	0	1	0	0	0	9691	1821	63	5	3484	5	MKI67	10	129903806	Missense_Mutation	SNP	T	TCGA-50-5932-01A-11D-1753-08	8707460	129903806	5630941	111	133744											
MKI67	4288	broad.mit.edu	37	chr10	129905293	129905293	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttttatcgttagtcattGattcctcagtgtgacctcgt	8	9	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129905293	C	C	129905293	4	2	159	1	0	0	0	0	0	1	0	0	9691	1294	45	4	4971	4	MKI67	10	129905293	Nonsense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	1487	129905293	5629454	112	133745											
NAP1L4	4676	broad.mit.edu	37	chr11	2999611	2999611	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagtattactgtaaagAaagttccaaagacatagcac	6	6	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2999611	G	G	2999611	1	3	159	0	1	0	0	0	0	0	0	0	10253	261	9	5		5	NAP1L4	11	2999611	Intron	SNP	A	TCGA-50-5932-01A-11D-1753-08		2999611	132006905	113	133746											
MRGPRX1	259249	broad.mit.edu	37	chr11	18956320	18956320	+	Frame_Shift_Del	DEL	G	-	-													tctgtgtccaaggttgagatGgttggatccatgctcagaaa							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18956320	-	-	18956320	7	5	159	1	0	1	0	1	0	0	0	0	9860	1335	47	0	960	0	MRGPRX1	11	18956320	Frame_Shift_Del	DEL	G	TCGA-50-5932-01A-11D-1753-08	15956709	18956320	116050196	114	133747											
ANO3	63982	broad.mit.edu	37	chr11	26669460	26669460	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacatttgtaattaaaatagGatcttactgggaagttttgt	8	3	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26669460	T	T	26669460	1	4	159	0	1	0	0	0	0	0	0	0	698	1189	41	3		3	ANO3	11	26669460	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	7713140	26669460	108337056	115	133748											
OR8I2	120586	broad.mit.edu	37	chr11	55860658	55860658	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtcattaaattttactttCcatttgtaaaactttcatga	4	6	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55860658	T	T	55860658	1	4	159	0	1	0	0	0	0	0	0	0	11334	870	30	4		4	OR8I2	11	55860658	5'Flank	SNP	C	TCGA-50-5932-01A-11D-1753-08	29191198	55860658	79145858	116	133749											
MS4A1	931	broad.mit.edu	37	chr11	60230098	60230098	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catacagaattcaatccaatTtgaagaattgggatccaacc	6	9	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60230098	A	A	60230098	1	1	159	0	1	0	0	0	0	0	0	0	9948	1856	64	5		5	MS4A1	11	60230098	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	4369440	60230098	74776418	117	133750											
DRAP1	10589	broad.mit.edu	37	chr11	65688003	65688003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggtggccaaggagtagGgagcactccgggcagatgga	20	7	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65688003	T	T	65688003	1	4	159	0	1	0	0	0	0	0	0	0	4795	1247	43	2		2	DRAP1	11	65688003	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	5457905	65688003	69318513	118	133751											
PPFIA1	8500	broad.mit.edu	37	chr11	70118639	70118639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcagatgagtattttccGtaacgatttgtgaaatgata	9	4	1	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70118639	T	T	70118639	1	4	159	0	1	0	0	0	0	0	0	0	12405	1160	40	3		3	PPFIA1	11	70118639	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	4430636	70118639	64887877	119	133752											
DGAT2	84649	broad.mit.edu	37	chr11	75511354	75511354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcatggtggatgcccagGggaagggtgttgactaacca	15	8	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75511354	T	T	75511354	1	4	159	0	1	0	0	0	0	0	0	0	4498	1247	43	2		2	DGAT2	11	75511354	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	5392715	75511354	59495162	120	133753											
OR8D1	283159	broad.mit.edu	37	chr11	124180714	124180714	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtatgaattaccttaacatgGaccctcactgctcttccaaa	5	12	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124180714	C	C	124180714	1	2	159	0	1	0	0	0	0	0	0	0	11325	1189	41	4		4	OR8D1	11	124180714	5'Flank	SNP	G	TCGA-50-5932-01A-11D-1753-08	48669360	124180714	10825802	121	133754											
RPUSD4	84881	broad.mit.edu	37	chr11	126080612	126080615	+	Intron	DEL	TTAT	-	-													tttagaaagggaggactgtcTtatttatttatttctgtgtt							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126080615	-	-	126080612	6	5	159	0	1	1	0	1	0	0	0	0	13780	1624	56	0		0	RPUSD4	11	126080612	Intron	DEL	TTAT	TCGA-50-5932-01A-11D-1753-08	1899898	126080612	8925904	122	133755											
ARHGAP32	9743	broad.mit.edu	37	chr11	128838914	128838914	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtggatggggaaagccaGggggcacatacgtccccatg	15	10	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128838914	A	A	128838914	3	1	159	1	0	0	0	0	1	0	0	0	883	1000	35	4	115	4	ARHGAP32	11	128838914	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	2758302	128838914	6167602	123	133756											
KCNA5	3741	broad.mit.edu	37	chr12	5154154	5154155	+	Nonsense_Mutation	DNP	CT	TA	TA													agttcagggatgaacgtgagCtgctccgccaccctccggcg							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	5154155	TA	TA	5154154	4	4	159	1	0	0	0	0	0	1	0	0	8076	796	28	4	843	4	KCNA5	12	5154154	Nonsense_Mutation	DNP	CT	TCGA-50-5932-01A-11D-1753-08		5154154	128697741	124	133757											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	159	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	20244131	25398285	108453610	125	133758											
IPO8	10526	broad.mit.edu	37	chr12	30814173	30814173	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttcttcatattcatcacTttgaagaactttgccaaata	3	9	4	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30814173	A	A	30814173	3	1	159	1	0	0	0	0	1	0	0	0	7868	1609	56	5	1370	5	IPO8	12	30814173	Missense_Mutation	SNP	T	TCGA-50-5932-01A-11D-1753-08	5415888	30814173	103037722	126	133759											
ARID2	196528	broad.mit.edu	37	chr12	46290734	46290734	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaaattcgtactagaattCatacgtaatctcaagagacc	6	8	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46290734	G	G	46290734	1	3	159	0	1	0	0	0	0	0	0	0	917	841	29	4		4	ARID2	12	46290734	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	15476561	46290734	87561161	127	133760											
TSPAN19	144448	broad.mit.edu	37	chr12	85413328	85413329	+	Intron	DNP	CC	AA	AA													ttcatccatctgccccatccCctgccctgacctattctctc							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	85413329	AA	AA	85413328	1	1	159	0	1	0	0	0	0	0	0	0	16768	638	22	2		2	TSPAN19	12	85413328	Intron	DNP	CC	TCGA-50-5932-01A-11D-1753-08	39122594	85413328	48438567	128	133761											
CCDC41	51134	broad.mit.edu	37	chr12	94772782	94772782	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaacattaagcagctggtTacgtagttcttctttatctt	6	8	4	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94772782	C	C	94772782	3	2	159	1	0	0	0	0	1	0	0	0	2840	1754	61	5	1563	5	CCDC41	12	94772782	Missense_Mutation	SNP	T	TCGA-50-5932-01A-11D-1753-08	9359454	94772782	39079113	129	133762											
PIWIL1	9271	broad.mit.edu	37	chr12	130851567	130851567	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacctggacagatgatacGccccaggagggatgtgttcc	12	11	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130851567	A	A	130851567	1	1	159	0	1	0	0	0	0	0	0	0	12052	1102	38	4		4	PIWIL1	12	130851567	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	36078785	130851567	3000328	130	133763											
SOHLH2	54937	broad.mit.edu	37	chr13	36788621	36788621	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacagcctcttacctggcCcgagatctggcagtgctcct	9	16	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36788621	T	T	36788621	3	4	159	1	0	0	0	0	1	0	0	0	15038	623	22	4	1278	4	SOHLH2	13	36788621	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08		36788621	78381257	131	133764											
F7	2155	broad.mit.edu	37	chr13	113773364	113773364	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagaaagccaaggctgcgtCgaactgtcctggcaccaaat	11	11	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113773364	T	T	113773364	1	4	159	0	1	0	0	0	0	0	0	0	5392	899	31	4		4	F7	13	113773364	3'UTR	SNP	C	TCGA-50-5932-01A-11D-1753-08	76984743	113773364	1396514	132	133765											
TFDP1	7027	broad.mit.edu	37	chr13	114290924	114290925	+	Missense_Mutation	DNP	GG	TT	TT													gtgctgaagcggatgggcatGgcttgcgggctggagtcggg							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	114290925	TT	TT	114290924	3	4	159	1	0	0	0	0	1	0	0	0	15920	1348	47	2	949	2	TFDP1	13	114290924	Missense_Mutation	DNP	GG	TCGA-50-5932-01A-11D-1753-08	517560	114290924	878954	133	133766											
SYNE2	23224	broad.mit.edu	37	chr14	64449237	64449238	+	Intron	INS	-	A	A													acagagcaagactccatctcINSaaaaaaaaaaaaaaaaaaga					rs71444636		TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64449238	A	A	64449237	6	5	159	0	1	1	1	0	0	0	0	0	15565	841	29	0		0	SYNE2	14	64449237	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08		64449237	42900303	134	133767											
PPP4R4	57718	broad.mit.edu	37	chr14	94642347	94642347	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggttggggggcaagactgAaccaatatttgtggtgcata	15	5	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94642347	C	C	94642347	1	2	159	0	1	0	0	0	0	0	0	0	12506	261	9	5		5	PPP4R4	14	94642347	Intron	SNP	A	TCGA-50-5932-01A-11D-1753-08	30193110	94642347	12707193	135	133768											
OR4M2	390538	broad.mit.edu	37	chr15	22368728	22368728	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatttgcaccatcagtctAgaccctcatctgacctctcc	4	16	6	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22368728	G	G	22368728	2	3	159	1	0	0	0	0	0	0	0	1	11170	407	15	5		5	OR4M2	15	22368728	Silent	SNP	A	TCGA-50-5932-01A-11D-1753-08		22368728	80162664	136	133769											
OTUD7A	161725	broad.mit.edu	37	chr15	31793813	31793813	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggtctccacaatccacctCcccgtgcaatggggtccctt	10	16	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31793813	A	A	31793813	1	1	159	0	1	0	0	0	0	0	0	0	11412	870	30	3		3	OTUD7A	15	31793813	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	9425085	31793813	70737579	137	133770											
EIF2AK4	440275	broad.mit.edu	37	chr15	40284993	40284993	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttaactgggatggttggcActgctctctatgtaagccca	10	10	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40284993	T	T	40284993	3	4	159	1	0	0	0	0	1	0	0	0	5039	159	6	5	2780	5	EIF2AK4	15	40284993	Missense_Mutation	SNP	A	TCGA-50-5932-01A-11D-1753-08	8491180	40284993	62246399	138	133771											
DUT	1854	broad.mit.edu	37	chr15	48626582	48626582	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaattttataaatagaTttgcagttattttctttcaa	3	4	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48626582	G	G	48626582	1	3	159	0	1	0	0	0	0	0	0	0	4873	1508	52	5		5	DUT	15	48626582	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	8341589	48626582	53904810	139	133772											
TRPM7	54822	broad.mit.edu	37	chr15	50870772	50870772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacctagaataatgtggtgTttgctgtaacagatcatgta	9	5	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50870772	C	C	50870772	1	2	159	0	1	0	0	0	0	0	0	0	16716	1740	60	5		5	TRPM7	15	50870772	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	2244190	50870772	51660620	140	133773											
ADAM10	102	broad.mit.edu	37	chr15	58889786	58889786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgataactctctcggggcCgctgacgctggggttgctga	14	10	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58889786	A	A	58889786	3	1	159	1	0	0	0	0	1	0	0	0	234	652	23	1	43	1	ADAM10	15	58889786	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	8019014	58889786	43641606	141	133774											
PTPN9	5780	broad.mit.edu	37	chr15	75761025	75761025	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttgatccatggcttcagCgtaactgatggcaacctata	9	9	1	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75761025	A	A	75761025	1	1	159	0	1	0	0	0	0	0	0	0	12902	783	27	3		3	PTPN9	15	75761025	3'UTR	SNP	C	TCGA-50-5932-01A-11D-1753-08	16871239	75761025	26770367	142	133775											
ETFA	2108	broad.mit.edu	37	chr15	76553797	76553797	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccagttctggaccacagaCccatccttcacccactggat	6	16	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76553797	T	T	76553797	1	4	159	0	1	0	0	0	0	0	0	0	5311	522	18	4		4	ETFA	15	76553797	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	792772	76553797	25977595	143	133776											
CHD2	1106	broad.mit.edu	37	chr15	93548001	93548001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaagtcttgaaatcggggGgtgccagtgtctgcagccgc	15	9	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93548001	T	T	93548001	1	4	159	0	1	0	0	0	0	0	0	0	3356	1247	43	2		2	CHD2	15	93548001	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	16994204	93548001	8983391	144	133777											
ADCY9	115	broad.mit.edu	37	chr16	4057495	4057495	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcaaagccagaaagcaaGgcctctgcacagctgcagcg	10	14	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4057495	A	A	4057495	2	1	159	1	0	0	0	0	0	0	0	1	301	987	35	4		4	ADCY9	16	4057495	Silent	SNP	G	TCGA-50-5932-01A-11D-1753-08		4057495	86297258	145	133778											
XYLT1	64131	broad.mit.edu	37	chr16	17221516	17221516	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgtgacaagacctggcCtcttacctcggaaaactgaa	9	10	1	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17221516	T	T	17221516	1	4	159	0	1	0	0	0	0	0	0	0	17590	696	24	4		4	XYLT1	16	17221516	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	13164021	17221516	73133237	146	133779											
CACNG3	10368	broad.mit.edu	37	chr16	24372630	24372630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaagtgacagttctctcCgaggtgtataaaggacgtgt	13	6	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24372630	A	A	24372630	1	1	159	0	1	0	0	0	0	0	0	0	2584	667	23	1		1	CACNG3	16	24372630	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	7151114	24372630	65982123	147	133780											
SETD1A	9739	broad.mit.edu	37	chr16	30992258	30992258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccagcaggctcctgtgGttccctcgggtggagttggg	15	13	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30992258	T	T	30992258	1	4	159	0	1	0	0	0	0	0	0	0	14243	1276	44	3		3	SETD1A	16	30992258	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	6619628	30992258	59362495	148	133781											
MYST1	84148	broad.mit.edu	37	chr16	31139285	31139285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaacagagaggcagagaCttgctccaaagcatgcagtg	14	8	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31139285	A	A	31139285	1	1	159	0	1	0	0	0	0	0	0	0	10196	580	20	3		3	MYST1	16	31139285	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	147027	31139285	59215468	149	133782											
ITGAD	3681	broad.mit.edu	37	chr16	31424071	31424071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccttctctccctttgccaCcatcctacctccatattccc	1	22	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31424071	A	A	31424071	1	1	159	0	1	0	0	0	0	0	0	0	7954	522	18	3		3	ITGAD	16	31424071	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	284786	31424071	58930682	150	133783											
NETO2	81831	broad.mit.edu	37	chr16	47165747	47165747	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaaattgaggctgatggGttgacagaaagccttaggtc	13	5	0	4			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47165747	T	T	47165747	1	4	159	0	1	0	0	0	0	0	0	0	10435	1276	44	3		3	NETO2	16	47165747	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	15741676	47165747	43189006	151	133784											
MMP2	4313	broad.mit.edu	37	chr16	55525643	55525644	+	Intron	DNP	GG	TT	TT													ctcaaaagtctgcatcactgGgtcaggtcttgacttctctc							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55525644	TT	TT	55525643	1	4	159	0	1	0	0	0	0	0	0	0	9751	1247	43	2		2	MMP2	16	55525643	Intron	DNP	GG	TCGA-50-5932-01A-11D-1753-08	8359896	55525643	34829110	152	133785											
MVD	4597	broad.mit.edu	37	chr16	88722721	88722721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagggtgtaggctgcaggcAtgcggattcagggagggtcc	18	9	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88722721	T	T	88722721	1	4	159	0	1	0	0	0	0	0	0	0	10088	232	8	5		5	MVD	16	88722721	Intron	SNP	A	TCGA-50-5932-01A-11D-1753-08	33197078	88722721	1632032	153	133786											
ZNF276	92822	broad.mit.edu	37	chr16	89795695	89795695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcaaaatgcccagtcttcgGacgagtcctttgagccttac	9	12	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89795695	T	T	89795695	3	4	159	1	0	0	0	0	1	0	0	0	17937	1174	41	3	1160	3	ZNF276	16	89795695	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	1072974	89795695	559058	154	133787											
USP6	9098	broad.mit.edu	37	chr17	5064781	5064781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagttggacctcgaacCagaaatgcttcttacactct	8	10	2	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5064781	T	T	5064781	1	4	159	0	1	0	0	0	0	0	0	0	17213	609	21	4		4	USP6	17	5064781	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08		5064781	76130429	155	133788											
SREBF1	6720	broad.mit.edu	37	chr17	17720399	17720399	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacgagcaccaacagcccaTtgagcagccagaccactggg	11	14	0	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17720399	C	C	17720399	3	2	159	1	0	0	0	0	1	0	0	0	15259	1493	52	5	1829	5	SREBF1	17	17720399	Missense_Mutation	SNP	T	TCGA-50-5932-01A-11D-1753-08	12655618	17720399	63474811	156	133789											
PROCA1	147011	broad.mit.edu	37	chr17	27031657	27031660	+	Intron	DEL	GAAG	-	-													gaagaggcaaaccaaaggttGaaggggagaccacaatgaaa							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27031660	-	-	27031657	6	5	159	0	1	1	0	1	0	0	0	0	12652	1305	45	0		0	PROCA1	17	27031657	Intron	DEL	GAAG	TCGA-50-5932-01A-11D-1753-08	9311258	27031657	54163553	157	133790											
JUP	3728	broad.mit.edu	37	chr17	39845341	39845341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagctatgggaaaggtcGcgggcccgggtggggcagcg	21	8	0	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39845341	T	T	39845341	1	4	159	0	1	0	0	0	0	0	0	0	8042	1102	38	3		3	JUP	17	39845341	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	12813684	39845341	41349869	158	133791											
WNK4	65266	broad.mit.edu	37	chr17	40936667	40936667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctgcgccggccagccCgcagtcaatgccctttgcct	9	17	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40936667	A	A	40936667	1	1	159	0	1	0	0	0	0	0	0	0	17507	667	23	1		1	WNK4	17	40936667	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	1091326	40936667	40258543	159	133792											
RSAD1	55316	broad.mit.edu	37	chr17	48556915	48556915	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggataggggtgggggtggggTtgggggtgtgtgcgactgaa	25	2	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48556915	G	G	48556915	1	3	159	0	1	0	0	0	0	0	0	0	13805	1740	60	5		5	RSAD1	17	48556915	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	7620248	48556915	32638295	160	133793											
CACNA1G	8913	broad.mit.edu	37	chr17	48649200	48649200	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagtcagcctagcccgGccagcctggtgtccccagcg	14	16	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48649200	A	A	48649200	1	1	159	0	1	0	0	0	0	0	0	0	2570	1218	42	4		4	CACNA1G	17	48649200	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	92285	48649200	32546010	161	133794											
KIF2B	84643	broad.mit.edu	37	chr17	51900368	51900368	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccccaagggccctggagCgctccctgatacctccatca	8	18	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51900368	A	A	51900368	1	1	159	0	1	0	0	0	0	0	0	0	8368	783	27	3		3	KIF2B	17	51900368	5'UTR	SNP	C	TCGA-50-5932-01A-11D-1753-08	3251168	51900368	29294842	162	133795											
CBX2	84733	broad.mit.edu	37	chr17	77758474	77758474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaccgacacaagcaaaaGtgagaagctggcttccagag	11	12	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77758474	T	T	77758474	3	4	159	1	0	0	0	0	1	0	0	0	2744	1029	36	3	1598	3	CBX2	17	77758474	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	25858106	77758474	3436736	163	133796											
L3MBTL4	91133	broad.mit.edu	37	chr18	6241361	6241361	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaaaatacttacaggaCttctgtttctgaataatttc	6	6	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6241361	G	G	6241361	3	3	159	1	0	0	0	0	1	0	0	0	8666	565	20	4	1375	4	L3MBTL4	18	6241361	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08		6241361	71835887	164	133797											
DSG3	1830	broad.mit.edu	37	chr18	29054174	29054174	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttggagcagccactgaatCtggaggtgctgcaggctttg	15	9	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29054174	A	A	29054174	3	1	159	1	0	0	0	0	1	0	0	0	4818	913	32	3	2250	3	DSG3	18	29054174	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	22812813	29054174	49023074	165	133798											
B4GALT6	9331	broad.mit.edu	37	chr18	29206995	29206995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcatcttctcctccccatCcccagaaggcattaggaaaa	5	15	3	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29206995	A	A	29206995	3	1	159	1	0	0	0	0	1	0	0	0	1280	855	30	3	294	3	B4GALT6	18	29206995	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	152821	29206995	48870253	166	133799											
SERPINB2	5055	broad.mit.edu	37	chr18	61564605	61564605	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgtaacagctgcccttcCtgtaccctctggggcttcct	9	15	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61564605	T	T	61564605	1	4	159	0	1	0	0	0	0	0	0	0	14214	696	24	4		4	SERPINB2	18	61564605	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	32357610	61564605	16512643	167	133800											
PQLC1	80148	broad.mit.edu	37	chr18	77679237	77679237	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtaaagctggggcacaccCagcatggcttcggtcagcac	13	13	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77679237	A	A	77679237	2	1	159	1	0	0	0	0	0	0	0	1	12519	581	21	2		2	PQLC1	18	77679237	Silent	SNP	C	TCGA-50-5932-01A-11D-1753-08	16114632	77679237	398011	168	133801											
STK11	6794	broad.mit.edu	37	chr19	1220448	1220448	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaggacatcaagccggggAacctgctgctcaccaccggt	11	14	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220448	T	T	1220448	3	4	159	1	0	0	0	0	1	0	0	0	15405	246	9	5	555	5	STK11	19	1220448	Missense_Mutation	SNP	A	TCGA-50-5932-01A-11D-1753-08		1220448	57908535	169	133802											
HDGFRP2	84717	broad.mit.edu	37	chr19	4493990	4493990	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctgtagcggagaagcctCtcccgaagccgcgagggcgg	15	13	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4493990	T	T	4493990	3	4	159	1	0	0	0	0	1	0	0	0	7087	913	32	4	880	4	HDGFRP2	19	4493990	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	3273542	4493990	54634993	170	133803											
MUC16	94025	broad.mit.edu	37	chr19	9075084	9075084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagtcgtagccagtggaGtccctgtccaggaggctgtg	15	10	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9075084	T	T	9075084	3	4	159	1	0	0	0	0	1	0	0	0	10067	1029	36	3	31489	3	MUC16	19	9075084	Missense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	4581094	9075084	50053899	171	133804											
OR7E24	26648	broad.mit.edu	37	chr19	9362240	9362240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttattagtcttttggactCccagttgcacaatttgatta	6	7	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9362240	A	A	9362240	3	1	159	1	0	0	0	0	1	0	0	0	11315	855	30	3	523	3	OR7E24	19	9362240	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	287156	9362240	49766743	172	133805											
PSG11	5680	broad.mit.edu	37	chr19	43519460	43519460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtttgcgaagcaggacaagtCgaggttctctcctgaatagt	12	8	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43519460	A	A	43519460	3	1	159	1	0	0	0	0	1	0	0	0	12760	884	31	3	243	3	PSG11	19	43519460	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	34157220	43519460	15609523	173	133806											
CRX	1406	broad.mit.edu	37	chr19	48339553	48339553	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttcacccggagccaactgGaggagctggaggcactgttt	13	12	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48339553	T	T	48339553	4	4	159	1	0	0	0	0	0	1	0	0	3934	1175	41	3	160	3	CRX	19	48339553	Nonsense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	4820093	48339553	10789430	174	133807											
ZNF350	59348	broad.mit.edu	37	chr19	52468837	52468837	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacattcactgcatataTagggtttctctccggtatgt	7	10	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52468837	C	C	52468837	3	2	159	1	0	0	0	0	1	0	0	0	17989	1406	49	5	733	5	ZNF350	19	52468837	Missense_Mutation	SNP	T	TCGA-50-5932-01A-11D-1753-08	4129284	52468837	6660146	175	133808											
TFPT	29844	broad.mit.edu	37	chr19	54617764	54617765	+	Intron	INS	-	G	G													tgtggaaaggcagagattgcINSggggggcggtagtttaggcc							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54617765	G	G	54617764	6	5	159	0	1	1	1	0	0	0	0	0	15933	783	27	0		0	TFPT	19	54617764	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08	2148927	54617764	4511219	176	133809											
FAM113A	64773	broad.mit.edu	37	chr20	2818852	2818853	+	Intron	INS	-	C	C													agggccccagtgcatcactaINScccccccacttatggtaggg					rs145876762	by1000genomes	TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2818853	C	C	2818852	6	5	159	0	1	1	1	0	0	0	0	0	5447	406	14	0		0	FAM113A	20	2818852	Intron	INS	-	TCGA-50-5932-01A-11D-1753-08		2818852	60206668	177	133810											
TTLL9	164395	broad.mit.edu	37	chr20	30510852	30510852	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgaaaatccttacctgatAggaggtgagatggctgtgtc	12	6	0	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30510852	G	G	30510852	3	3	159	1	0	0	0	0	1	0	0	0	16860	410	15	5	686	5	TTLL9	20	30510852	Missense_Mutation	SNP	A	TCGA-50-5932-01A-11D-1753-08	27692000	30510852	32514668	178	133811											
BPIL1	80341	broad.mit.edu	37	chr20	31606667	31606667	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccagggcctgtggggcaaGagctccctgtggcccagcct	15	15	0	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31606667	T	T	31606667	1	4	159	0	1	0	0	0	0	0	0	0	1500	957	33	3		3	BPIL1	20	31606667	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	1095815	31606667	31418853	179	133812											
BPIL3	128859	broad.mit.edu	37	chr20	31626778	31626778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattcctgaagtgagtgccCcacctccccatcaccactgc	6	18	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31626778	A	A	31626778	1	1	159	0	1	0	0	0	0	0	0	0	1502	638	22	2		2	BPIL3	20	31626778	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	20111	31626778	31398742	180	133813											
PTPRT	11122	broad.mit.edu	37	chr20	41420129	41420129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacccacaaagcaggtgGgaagtagagacaaagagaaa	14	6	0	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41420129	T	T	41420129	1	4	159	0	1	0	0	0	0	0	0	0	12920	1247	43	2		2	PTPRT	20	41420129	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	9793351	41420129	21605391	181	133814											
WFDC12	128488	broad.mit.edu	37	chr20	43752488	43752488	+	Nonstop_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtagaaaggacccagcatCatttctgaggacacctggta	11	9	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43752488	A	A	43752488	4	1	159	1	0	0	0	0	0	0	0	0	17477	837	29	3	4	3	WFDC12	20	43752488	Nonstop_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	2332359	43752488	19273032	182	133815											
SLC13A3	64849	broad.mit.edu	37	chr20	45221081	45221081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggaaggagatccagagCcagcctgccaacaggaacaa	11	11	0	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45221081	A	A	45221081	3	1	159	1	0	0	0	0	1	0	0	0	14506	740	26	3	958	3	SLC13A3	20	45221081	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	1468593	45221081	17804439	183	133816											
DOK5	55816	broad.mit.edu	37	chr20	53226851	53226851	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaatgggcgcagcctaatgGagtatgccaggatcttggtg	14	7	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53226851	T	T	53226851	1	4	159	0	1	0	0	0	0	0	0	0	4740	1189	41	3		3	DOK5	20	53226851	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08	8005770	53226851	9798669	184	133817											
MC3R	4159	broad.mit.edu	37	chr20	54824041	54824041	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcccgaggttttcctgtctCtgggcatcgtcagtctgctg	12	12	3	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54824041	A	A	54824041	3	1	159	1	0	0	0	0	1	0	0	0	9458	912	32	3	144	3	MC3R	20	54824041	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	1597190	54824041	8201479	185	133818											
EEF1A2	1917	broad.mit.edu	37	chr20	62126186	62126186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctccagcatgttgtcaCcgtgccagccggagatgggc	15	12	1	1			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62126186	A	A	62126186	3	1	159	1	0	0	0	0	1	0	0	0	4964	507	18	3	818	3	EEF1A2	20	62126186	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	7302145	62126186	899334	186	133819											
SYNJ1	8867	broad.mit.edu	37	chr21	34004181	34004181	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accccctattcttcctgtctCaattattcttcccttttagg	3	14	3	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34004181	G	G	34004181	1	3	159	0	1	0	0	0	0	0	0	0	15571	841	29	4		4	SYNJ1	21	34004181	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08		34004181	14125714	187	133820											
ITSN1	6453	broad.mit.edu	37	chr21	35107553	35107553	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtattttcttgtatattTtaaaaataaatgttttcctt	3	4	2	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35107553	C	C	35107553	1	2	159	0	1	0	0	0	0	0	0	0	7996	1856	64	5		5	ITSN1	21	35107553	Intron	SNP	T	TCGA-50-5932-01A-11D-1753-08	1103372	35107553	13022342	188	133821											
ADARB1	104	broad.mit.edu	37	chr21	46624492	46624492	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacgtggtgggcatccagGgatccctgctcagcattttc	13	11	1	0			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46624492	T	T	46624492	4	4	159	1	0	0	0	0	0	1	0	0	282	1233	43	2	1738	2	ADARB1	21	46624492	Nonsense_Mutation	SNP	G	TCGA-50-5932-01A-11D-1753-08	11516939	46624492	1505403	189	133822											
PVALB	5816	broad.mit.edu	37	chr22	37196917	37196917	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagaggtggaagaccaGgggcagtcagtgcttcttag	17	7	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37196917	T	T	37196917	1	4	159	0	1	0	0	0	0	0	0	0	12944	1015	35	2		2	PVALB	22	37196917	3'UTR	SNP	G	TCGA-50-5932-01A-11D-1753-08		37196917	14107649	190	133823											
SSX5	6758	broad.mit.edu	37	chrX	48053792	48053792	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccaggagtttgaggctgcaGtgagctatgattgcactact	13	8	0	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48053792	C	C	48053792	1	2	159	0	1	0	0	0	0	0	0	0	15326	1044	36	4		4	SSX5	23	48053792	Intron	SNP	G	TCGA-50-5932-01A-11D-1753-08		48053792	107216768	191	133824											
CAPN6	827	broad.mit.edu	37	chrX	110494814	110494824	+	Frame_Shift_Del	DEL	AGGGGTTTCTC	-	-													actccattcctgtcttcccaAggggtttctcaggcgaacca							TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110494824	-	-	110494814	7	5	159	1	0	1	0	1	0	0	0	0	2656	69	3	0	1101	0	CAPN6	23	110494814	Frame_Shift_Del	DEL	AGGGGTTTCTC	TCGA-50-5932-01A-11D-1753-08	62441022	110494814	44775746	192	133825											
GPC4	2239	broad.mit.edu	37	chrX	132437409	132437409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaagatgattcgtaaagCgaaaagattttatctgtctg	9	5	2	3			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132437409	A	A	132437409	1	1	159	0	1	0	0	0	0	0	0	0	6665	783	27	3		3	GPC4	23	132437409	Intron	SNP	C	TCGA-50-5932-01A-11D-1753-08	21942595	132437409	22833151	193	133826											
MAGEC1	9947	broad.mit.edu	37	chrX	140995628	140995628	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctcctctccagagtcCtgtgagctccttcccctcct	6	19	2	2			TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140995628	T	T	140995628	3	4	159	1	0	0	0	0	1	0	0	0	9272	681	24	4	2444	4	MAGEC1	23	140995628	Missense_Mutation	SNP	C	TCGA-50-5932-01A-11D-1753-08	8558219	140995628	14274932	194	133827											
ATP6AP1	537	broad.mit.edu	37	chrX	153662571	153662571	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtggcccgtgatgtagcCgtggtggccggagggctagg	20	9	0	1	rs138051216		TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153662571	T	T	153662571	2	4	159	1	0	0	0	0	0	0	0	1	1169	639	23	4		4	ATP6AP1	23	153662571	Silent	SNP	C	TCGA-50-5932-01A-11D-1753-08	12666943	153662571	1607989	195	133828											
TNFRSF4	7293	broad.mit.edu	37	chr1	1148426	1148426	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcccggcagcggcagaCtgtgtcctgtgtggccgtgc	16	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1148426	G	G	1148426	3	3	160	1	0	0	0	0	1	0	0	0	16420	565	20	4	537	4	TNFRSF4	1	1148426	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08		1148426	248102195	1	133829											
TAS1R1	80835	broad.mit.edu	37	chr1	6636489	6636489	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcagcttttggagcagatCcacaaggtgcatttccttct	8	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6636489	A	A	6636489	2	1	160	1	0	0	0	0	0	0	0	1	15681	845	30	3		3	TAS1R1	1	6636489	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	5488063	6636489	242614132	2	133830											
ERRFI1	54206	broad.mit.edu	37	chr1	8074129	8074129	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaaaaggaagtctgtatctGagctagttaggaattccacc	9	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8074129	C	C	8074129	4	2	160	1	0	0	0	0	0	1	0	0	5286	1294	45	4	862	4	ERRFI1	1	8074129	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1437640	8074129	241176492	3	133831											
SLC45A1	50651	broad.mit.edu	37	chr1	8390452	8390452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccgccgagtgagaagcGggcagccatgaagagcccca	16	13	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8390452	T	T	8390452	3	4	160	1	0	0	0	0	1	0	0	0	14754	1116	39	1	913	1	SLC45A1	1	8390452	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	316323	8390452	240860169	4	133832											
RERE	473	broad.mit.edu	37	chr1	8424286	8424286	+	Frame_Shift_Del	DEL	C	-	-													ggtgcaaagcaggatgttctCccggcctccgtggtgccaat							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8424286	-	-	8424286	7	5	160	1	0	1	0	1	0	0	0	0	13339	864	30	0	3166	0	RERE	1	8424286	Frame_Shift_Del	DEL	C	TCGA-50-5933-01A-11D-1753-08	33834	8424286	240826335	5	133833											
RERE	473	broad.mit.edu	37	chr1	8684419	8684419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atacggtgtgtttggcctccGactctcgatatacacacagt	9	11	1	0	rs142952294	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8684419	A	A	8684419	3	1	160	1	0	0	0	0	1	0	0	0	13339	1057	37	4	4438	4	RERE	1	8684419	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	260133	8684419	240566202	6	133834											
PTCHD2	57540	broad.mit.edu	37	chr1	11589657	11589657	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagccccccttccacgggcGcgtatgcatggcaccccctg	10	19	0	0	rs12096312		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11589657	A	A	11589657	3	1	160	1	0	0	0	0	1	0	0	0	12839	1087	38	4	2893	4	PTCHD2	1	11589657	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2905238	11589657	237660964	7	133835											
MTHFR	4524	broad.mit.edu	37	chr1	11854623	11854623	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggtgcccagaggtcaggGcacactcctgacagagggca	16	11	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11854623	A	A	11854623	1	1	160	0	1	0	0	0	0	0	0	0	10025	1218	42	4		4	MTHFR	1	11854623	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	264966	11854623	237395998	8	133836											
PRAMEF1	65121	broad.mit.edu	37	chr1	12853572	12853572	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcccttcacctgcctccctCtgggatcactgatgaagacg	10	15	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12853572	A	A	12853572	3	1	160	1	0	0	0	0	1	0	0	0	12526	912	32	3	198	3	PRAMEF1	1	12853572	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	998949	12853572	236397049	9	133837											
PADI1	29943	broad.mit.edu	37	chr1	17566290	17566290	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgcacaggtgagaggcagGaccaccagctgctctaaggg	14	11	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17566290	A	A	17566290	1	1	160	0	1	0	0	0	0	0	0	0	11471	1189	41	4		4	PADI1	1	17566290	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	4712718	17566290	231684331	10	133838											
RCC2	55920	broad.mit.edu	37	chr1	17736577	17736577	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaacaagatgttcgcaatcGaggatccatgtggctcagtc	10	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17736577	A	A	17736577	1	1	160	0	1	0	0	0	0	0	0	0	13282	1073	37	4		4	RCC2	1	17736577	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	170287	17736577	231514044	11	133839											
TAS1R2	80834	broad.mit.edu	37	chr1	19167002	19167002	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccactcgttattcgggcaGgcctggcattcatattcatc	9	12	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19167002	T	T	19167002	2	4	160	1	0	0	0	0	0	0	0	1	15682	987	35	2		2	TAS1R2	1	19167002	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1430425	19167002	230083619	12	133840											
UBR4	23352	broad.mit.edu	37	chr1	19478267	19478267	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatatgacggggcccgttcTattgcttgagtcccaatctg	10	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19478267	C	C	19478267	3	2	160	1	0	0	0	0	1	0	0	0	17030	1512	53	5	8704	5	UBR4	1	19478267	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	311265	19478267	229772354	13	133841											
HTR6	3362	broad.mit.edu	37	chr1	20005368	20005368	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgggaagggtggcctgGgtccctgccctgggaccagg	18	11	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20005368	A	A	20005368	1	1	160	0	1	0	0	0	0	0	0	0	7521	1247	43	4		4	HTR6	1	20005368	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	527101	20005368	229245253	14	133842											
UBXN10	127733	broad.mit.edu	37	chr1	20517691	20517691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaggccaaaggtttgtaCgccatttccggccaacagat	9	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20517691	A	A	20517691	3	1	160	1	0	0	0	0	1	0	0	0	17038	536	19	3	639	3	UBXN10	1	20517691	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	512323	20517691	228732930	15	133843											
AHDC1	27245	broad.mit.edu	37	chr1	27876303	27876303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatggtgaggggcccagCcaccacccttatccccggcc	11	19	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27876303	A	A	27876303	3	1	160	1	0	0	0	0	1	0	0	0	412	739	26	3	2491	3	AHDC1	1	27876303	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	7358612	27876303	221374318	16	133844											
LAPTM5	7805	broad.mit.edu	37	chr1	31206807	31206807	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctgagtatggtcaagaatGacctgcaattccaacctggg	12	9	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31206807	A	A	31206807	1	1	160	0	1	0	0	0	0	0	0	0	8698	1305	45	4		4	LAPTM5	1	31206807	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3330504	31206807	218043814	17	133845											
SERINC2	347735	broad.mit.edu	37	chr1	31898241	31898241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccttctacattcctgacGgctccttcaccaacagtagg	8	14	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31898241	T	T	31898241	3	4	160	1	0	0	0	0	1	0	0	0	14193	1116	39	1	471	1	SERINC2	1	31898241	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	691434	31898241	217352380	18	133846											
COL16A1	1307	broad.mit.edu	37	chr1	32155450	32155450	+	Frame_Shift_Del	DEL	A	-	-													gggcacacttcacaggggtcAccctagcagaagggagaggc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32155450	-	-	32155450	7	5	160	1	0	1	0	1	0	0	0	0	3705	146	6	0	3498	0	COL16A1	1	32155450	Frame_Shift_Del	DEL	A	TCGA-50-5933-01A-11D-1753-08	257209	32155450	217095171	19	133847											
RBBP4	5928	broad.mit.edu	37	chr1	33133872	33133872	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaaaattgaaatagaaatCaagatcaaccatgaaggaga	9	4	2	5			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33133872	A	A	33133872	2	1	160	1	0	0	0	0	0	0	0	1	13209	816	29	3		3	RBBP4	1	33133872	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	978422	33133872	216116749	20	133848											
CSMD2	114784	broad.mit.edu	37	chr1	34174722	34174722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcggagagttcgaatgcCctggctttcagctgaattcc	10	12	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34174722	A	A	34174722	3	1	160	1	0	0	0	0	1	0	0	0	3979	622	22	2	7232	2	CSMD2	1	34174722	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1040850	34174722	215075899	21	133849											
THRAP3	9967	broad.mit.edu	37	chr1	36759490	36759490	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtacattcagaaaacatgGtttggctcatgatgaaatga	9	6	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36759490	A	A	36759490	3	1	160	1	0	0	0	0	1	0	0	0	15997	1261	44	4	2091	4	THRAP3	1	36759490	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2584768	36759490	212491131	22	133850											
NT5C1A	84618	broad.mit.edu	37	chr1	40131791	40131791	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagggttcgttctcatgttCcagctggtagcgcacgtact	12	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40131791	A	A	40131791	4	1	160	1	0	0	0	0	0	1	0	0	10780	864	30	3	873	3	NT5C1A	1	40131791	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	3372301	40131791	209118830	23	133851											
SMAP2	64744	broad.mit.edu	37	chr1	40882385	40882385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggaaagggttagccaGggagagttcgggctgacttt	16	7	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40882385	T	T	40882385	1	4	160	0	1	0	0	0	0	0	0	0	14881	1015	35	2		2	SMAP2	1	40882385	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	750594	40882385	208368236	24	133852											
PTCH2	8643	broad.mit.edu	37	chr1	45293036	45293036	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccccagggcgtttctccCtgcagcacccctccctgccc	9	21	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45293036	T	T	45293036	1	4	160	0	1	0	0	0	0	0	0	0	12837	696	24	4		4	PTCH2	1	45293036	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4410651	45293036	203957585	25	133853											
SPATA6	54558	broad.mit.edu	37	chr1	48860919	48860919	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcaactacagcaatgaatAaagacaacttctagcttacc	6	10	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48860919	G	G	48860919	1	3	160	0	1	0	0	0	0	0	0	0	15129	377	13	5		5	SPATA6	1	48860919	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	3567883	48860919	200389702	26	133854											
ZCCHC11	23318	broad.mit.edu	37	chr1	52901131	52901131	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacaaggttgcggaccagcTgggctgctaagagaaggcat	14	8	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52901131	A	A	52901131	3	1	160	1	0	0	0	0	1	0	0	0	17706	1580	55	5	784	5	ZCCHC11	1	52901131	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	4040212	52901131	196349490	27	133855											
ZCCHC11	23318	broad.mit.edu	37	chr1	52930699	52930699	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaacatagaatcgtcatTgggagaaaataaacttacat	6	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52930699	G	G	52930699	1	3	160	0	1	0	0	0	0	0	0	0	17706	1827	63	5		5	ZCCHC11	1	52930699	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	29568	52930699	196319922	28	133856											
LRP8	7804	broad.mit.edu	37	chr1	53728281	53728281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccttcttgctggggacatgAccggggtggtctgagtcaca	15	10	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53728281	T	T	53728281	1	4	160	0	1	0	0	0	0	0	0	0	9050	290	10	5		5	LRP8	1	53728281	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	797582	53728281	195522340	29	133857											
DNAJC6	9829	broad.mit.edu	37	chr1	65864448	65864448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgaactcagaaaagtgGgttctgagctctcttgttct	11	7	4	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65864448	T	T	65864448	1	4	160	0	1	0	0	0	0	0	0	0	4693	1247	43	2		2	DNAJC6	1	65864448	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	12136167	65864448	183386173	30	133858											
LEPR	3953	broad.mit.edu	37	chr1	66075681	66075681	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtcagtctcccagttccaGacttgtgtgcagtctatgct	9	12	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66075681	T	T	66075681	3	4	160	1	0	0	0	0	1	0	0	0	8800	942	33	3	1846	3	LEPR	1	66075681	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	211233	66075681	183174940	31	133859											
GNG12	55970	broad.mit.edu	37	chr1	68173365	68173365	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtgcttgctgttttgctgGacatcttcaattattgtttt	9	6	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68173365	A	A	68173365	3	1	160	1	0	0	0	0	1	0	0	0	6589	1174	41	4	221	4	GNG12	1	68173365	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2097684	68173365	181077256	32	133860											
WLS	79971	broad.mit.edu	37	chr1	68627438	68627438	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccttccggcattctctgcTattgctcgttggagtgctct	9	12	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68627438	A	A	68627438	1	1	160	0	1	0	0	0	0	0	0	0	17503	1537	53	5		5	WLS	1	68627438	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	454073	68627438	180623183	33	133861											
WLS	79971	broad.mit.edu	37	chr1	68659674	68659674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaggcaatgtccagctGcaggataaacagcatgaatt	10	8	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68659674	T	T	68659674	3	4	160	1	0	0	0	0	1	0	0	0	17503	1328	46	3	1452	3	WLS	1	68659674	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	32236	68659674	180590947	34	133862											
RPE65	6121	broad.mit.edu	37	chr1	68912605	68912605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggctaggcttgtccttGgtaaggcagagtatatcagc	13	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68912605	T	T	68912605	1	4	160	0	1	0	0	0	0	0	0	0	13656	1363	47	2		2	RPE65	1	68912605	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	252931	68912605	180338016	35	133863											
PTGER3	5733	broad.mit.edu	37	chr1	71512593	71512593	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaggttgccccagttaTgcgaagagctagtcccgttg	12	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71512593	C	C	71512593	3	2	160	1	0	0	0	0	1	0	0	0	12850	1464	51	5	823	5	PTGER3	1	71512593	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	2599988	71512593	177738028	36	133864											
TNNI3K	51086	broad.mit.edu	37	chr1	74801830	74801830	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggaagaaggcagcaaagcaGatggtaagattatatattta	11	3	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74801830	C	C	74801830	3	2	160	1	0	0	0	0	1	0	0	0	16452	942	33	4	1060	4	TNNI3K	1	74801830	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3289237	74801830	174448791	37	133865											
TNNI3K	51086	broad.mit.edu	37	chr1	74929264	74929264	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttatttcctcttagaaaaTgtgttatggtcaaaatctgt	6	5	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74929264	A	A	74929264	1	1	160	0	1	0	0	0	0	0	0	0	16452	1479	51	5		5	TNNI3K	1	74929264	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	127434	74929264	174321357	38	133866											
C1orf173	127254	broad.mit.edu	37	chr1	75037607	75037607	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttagcacgacatccactcCtccttgcccttcagctctcc	4	20	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75037607	T	T	75037607	3	4	160	1	0	0	0	0	1	0	0	0	2034	690	24	4	809	4	C1orf173	1	75037607	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	108343	75037607	174213014	39	133867											
C1orf173	127254	broad.mit.edu	37	chr1	75038256	75038256	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccttgggtaaaatttctttCctatcatcttccctattagc	4	11	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75038256	G	G	75038256	3	3	160	1	0	0	0	0	1	0	0	0	2034	854	30	4	1458	4	C1orf173	1	75038256	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	649	75038256	174212365	40	133868											
C1orf173	127254	broad.mit.edu	37	chr1	75039035	75039035	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttttccctgtactatgtCagcatctctgtgctggggcg	10	13	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75039035	T	T	75039035	3	4	160	1	0	0	0	0	1	0	0	0	2034	826	29	4	2237	4	C1orf173	1	75039035	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	779	75039035	174211586	41	133869											
TYW3	127253	broad.mit.edu	37	chr1	75204454	75204454	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtgcagtgtcgacaattGcaggatgcacagattctggt	12	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75204454	A	A	75204454	2	1	160	1	0	0	0	0	0	0	0	1	16946	1310	46	4		4	TYW3	1	75204454	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	165419	75204454	174046167	42	133870											
SLC44A5	204962	broad.mit.edu	37	chr1	75708813	75708813	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgcactgttttccatcTaagaaacctaaatcaatttc	4	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75708813	G	G	75708813	1	3	160	0	1	0	0	0	0	0	0	0	14753	1537	53	5		5	SLC44A5	1	75708813	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	504359	75708813	173541808	43	133871											
LPHN2	23266	broad.mit.edu	37	chr1	81893015	81893015	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgacagtcgtcctggttaTagtagtagagggggctatgg	15	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81893015	C	C	81893015	1	2	160	0	1	0	0	0	0	0	0	0	9003	1421	49	5		5	LPHN2	1	81893015	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	6184202	81893015	167357606	44	133872											
LPHN2	23266	broad.mit.edu	37	chr1	81969103	81969103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgttcaccaagtcctacCtcatcccggggcacccccag	7	19	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81969103	A	A	81969103	1	1	160	0	1	0	0	0	0	0	0	0	9003	696	24	2		2	LPHN2	1	81969103	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	76088	81969103	167281518	45	133873											
LPHN2	23266	broad.mit.edu	37	chr1	82416656	82416656	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgattcccgaatgcatgcAgaaaaatggtttcaatttca	8	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82416656	C	C	82416656	1	2	160	0	1	0	0	0	0	0	0	0	9003	203	7	5		5	LPHN2	1	82416656	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	447553	82416656	166833965	46	133874											
LPHN2	23266	broad.mit.edu	37	chr1	82456781	82456781	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagaagggtgtattccAgaaggagatgttagagaagg	14	3	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456781	T	T	82456781	2	4	160	1	0	0	0	0	0	0	0	1	9003	175	7	5		5	LPHN2	1	82456781	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	40125	82456781	166793840	47	133875											
PRKACB	5567	broad.mit.edu	37	chr1	84650823	84650823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttatggaatatgtccctgGgggtgaaatgttttcacatc	12	6	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84650823	T	T	84650823	3	4	160	1	0	0	0	0	1	0	0	0	12604	1232	43	2	586	2	PRKACB	1	84650823	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2194042	84650823	164599798	48	133876											
CLCA2	9635	broad.mit.edu	37	chr1	86900454	86900454	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttgaacgaaaatgaatgTaaacatttatcattttttct	4	4	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86900454	A	A	86900454	1	1	160	0	1	0	0	0	0	0	0	0	3489	1653	57	5		5	CLCA2	1	86900454	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	2249631	86900454	162350167	49	133877											
HS2ST1	9653	broad.mit.edu	37	chr1	87530232	87530232	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgcatccctgttgactatCtggaaaccacacaagaaagc	7	11	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87530232	A	A	87530232	1	1	160	0	1	0	0	0	0	0	0	0	7429	928	32	3		3	HS2ST1	1	87530232	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	629778	87530232	161720389	50	133878											
GBP6	163351	broad.mit.edu	37	chr1	89849285	89849285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttgcagtcagataaagcCctcactgatagagagaaggc	10	9	3	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89849285	A	A	89849285	2	1	160	1	0	0	0	0	0	0	0	1	6340	610	22	2		2	GBP6	1	89849285	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2319053	89849285	159401336	51	133879											
RPL5	6125	broad.mit.edu	37	chr1	93306043	93306043	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggacaagataagttatGgttgcattaatatagtaggg	12	2	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93306043	A	A	93306043	1	1	160	0	1	0	0	0	0	0	0	0	13708	1363	47	4		4	RPL5	1	93306043	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3456758	93306043	155944578	52	133880											
FRRS1	391059	broad.mit.edu	37	chr1	100207832	100207832	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgactcactgctgatccctGaaataaaagggaaaagagct	10	8	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100207832	C	C	100207832	1	2	160	0	1	0	0	0	0	0	0	0	6120	1305	45	4		4	FRRS1	1	100207832	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	6901789	100207832	149042789	53	133881											
COL11A1	1301	broad.mit.edu	37	chr1	103352680	103352680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagatattaattattaCtggttatgtttttgttataa	6	3	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103352680	A	A	103352680	1	1	160	0	1	0	0	0	0	0	0	0	3699	580	20	3		3	COL11A1	1	103352680	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3144848	103352680	145897941	54	133882											
COL11A1	1301	broad.mit.edu	37	chr1	103428212	103428212	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaagcatgttgtaccttTgcaccttcttttcctgcagc	7	12	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103428212	A	A	103428212	2	1	160	1	0	0	0	0	0	0	0	1	3699	1799	63	5		5	COL11A1	1	103428212	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	75532	103428212	145822409	55	133883											
COL11A1	1301	broad.mit.edu	37	chr1	103462546	103462546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaaaataactatatgaaCgtgatttatatatatgagat	5	5	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103462546	A	A	103462546	1	1	160	0	1	0	0	0	0	0	0	0	3699	551	19	3		3	COL11A1	1	103462546	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	34334	103462546	145788075	56	133884											
VAV3	10451	broad.mit.edu	37	chr1	108322134	108322134	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgagaaaagaggaaaataCtaattagatatgtagttcag	9	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108322134	T	T	108322134	1	4	160	0	1	0	0	0	0	0	0	0	17260	580	20	4		4	VAV3	1	108322134	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4859588	108322134	140928487	57	133885											
KIAA1324	57535	broad.mit.edu	37	chr1	109743374	109743374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tagactagagtacaagtactCcaagctggtgatgaatgcta	10	7	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109743374	T	T	109743374	3	4	160	1	0	0	0	0	1	0	0	0	8293	855	30	4	2907	4	KIAA1324	1	109743374	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1421240	109743374	139507247	58	133886											
KCNA2	3737	broad.mit.edu	37	chr1	111146070	111146070	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagaggcacttctacttttCtttaggtcaggggaggatgg	14	6	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111146070	G	G	111146070	3	3	160	1	0	0	0	0	1	0	0	0	8073	912	32	4	168	4	KCNA2	1	111146070	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1402696	111146070	138104551	59	133887											
KCNA2	3737	broad.mit.edu	37	chr1	111147160	111147160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggcatcaaagctagggCggttccgatcgaaaaagtac	11	8	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111147160	A	A	111147160	3	1	160	1	0	0	0	0	1	0	0	0	8073	768	27	3	1258	3	KCNA2	1	111147160	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1090	111147160	138103461	60	133888											
C1orf88	128344	broad.mit.edu	37	chr1	111889256	111889256	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacgcagtacacaagtgCtagccctagcagctcgcgat	11	13	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111889256	A	A	111889256	1	1	160	0	1	0	0	0	0	0	0	0	2087	812	28	3		3	C1orf88	1	111889256	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	742096	111889256	137361365	61	133889											
KCND3	3752	broad.mit.edu	37	chr1	112524479	112524479	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgaagacgcggaagacCcggagcgtgacgaaggcgcc	15	12	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112524479	A	A	112524479	2	1	160	1	0	0	0	0	0	0	0	1	8090	610	22	2		2	KCND3	1	112524479	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	635223	112524479	136726142	62	133890											
CSDE1	7812	broad.mit.edu	37	chr1	115282540	115282540	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaagaatatatacAtatctgtacattatctccat	3	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115282540	G	G	115282540	1	3	160	0	1	0	0	0	0	0	0	0	3963	232	8	5		5	CSDE1	1	115282540	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2758061	115282540	133968081	63	133891											
CASQ2	845	broad.mit.edu	37	chr1	116280740	116280740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctaacttctattctaccCagcaaaagaggtgctgaaga	7	9	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116280740	A	A	116280740	1	1	160	0	1	0	0	0	0	0	0	0	2707	609	21	2		2	CASQ2	1	116280740	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	998200	116280740	132969881	64	133892											
IGSF3	3321	broad.mit.edu	37	chr1	117142563	117142563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtccgcagcactcacCtggctgcagcaccctgatct	9	17	2	1	rs140588218		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117142563	A	A	117142563	3	1	160	1	0	0	0	0	1	0	0	0	7671	695	24	2	1575	2	IGSF3	1	117142563	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	861823	117142563	132108058	65	133893											
HSD3B2	3284	broad.mit.edu	37	chr1	119962113	119962113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccattcctgaaaagagcctGccaggacgtctcggtcgtca	11	13	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119962113	T	T	119962113	3	4	160	1	0	0	0	0	1	0	0	0	7458	1319	46	3	221	3	HSD3B2	1	119962113	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2819550	119962113	129288508	66	133894											
NBPF7	343505	broad.mit.edu	37	chr1	120384922	120384922	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actccgtttgacaaatatttGtgtgtcgtgagcctgccatg	10	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120384922	C	C	120384922	1	2	160	0	1	0	0	0	0	0	0	0	10293	1392	48	4		4	NBPF7	1	120384922	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	422809	120384922	128865699	67	133895											
NBPF9	400818	broad.mit.edu	37	chr1	144520730	144520730	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtcgcggtcagagaactggGaagggggcgcggggtccgag	21	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144520730	A	A	144520730	1	1	160	0	1	0	0	0	0	0	0	0	10294	1189	41	4		4	NBPF9	1	144520730	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	24135808	144520730	104729891	68	133896											
NBPF9	400818	broad.mit.edu	37	chr1	144619343	144619343	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaacgaacattttgtatttAtagaaaatgacgaagatgag	9	3	0	5			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144619343	C	C	144619343	1	2	160	0	1	0	0	0	0	0	0	0	10294	464	16	5		5	NBPF9	1	144619343	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	98613	144619343	104631278	69	133897											
PDE4DIP	9659	broad.mit.edu	37	chr1	144865934	144865935	+	Intron	DNP	CC	AA	AA													aagttagaagtggatcctgtCccagaaagtagacatttggg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	144865935	AA	AA	144865934	1	1	160	0	1	0	0	0	0	0	0	0	11737	870	30	3		3	PDE4DIP	1	144865934	Intron	DNP	CC	TCGA-50-5933-01A-11D-1753-08	246591	144865934	104384687	70	133898											
LOC200030	200030	broad.mit.edu	37	chr1	148193697	148193697	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggggccaccctattacacCgacccaggaggaccggggat	13	15	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148193697	G	G	148193697	1	3	160	0	1	0	0	0	0	0	0	0	8950	667	23	4		4	LOC200030	1	148193697	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3327763	148193697	101056924	71	133899											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149398967	149398967	+	RNA	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctctcccgcgatgcgctcGaagatgtcgttgacgaagga	13	12	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149398967	A	A	149398967	1	1	160	0	1	0	0	0	0	0	0	0	7247	1049	37	4		4	HIST2H2BF	1	149398967	RNA	SNP	G	TCGA-50-5933-01A-11D-1753-08	1205270	149398967	99851654	72	133900											
ECM1	1893	broad.mit.edu	37	chr1	150482265	150482265	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaccatcccatgccctcctCagtgaccctccaggtttcta	5	18	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150482265	T	T	150482265	1	4	160	0	1	0	0	0	0	0	0	0	4937	841	29	4		4	ECM1	1	150482265	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1083298	150482265	98768356	73	133901											
SETDB1	9869	broad.mit.edu	37	chr1	150936752	150936752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggacagaacttacttGggactacaactacgaggtgg	14	8	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150936752	T	T	150936752	3	4	160	1	0	0	0	0	1	0	0	0	14251	1357	47	2	3870	2	SETDB1	1	150936752	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	454487	150936752	98313869	74	133902											
TDRKH	11022	broad.mit.edu	37	chr1	151748189	151748189	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtgaggaaaaggcacctGagtccccagaattcaaaaag	11	9	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151748189	A	A	151748189	1	1	160	0	1	0	0	0	0	0	0	0	15859	1305	45	4		4	TDRKH	1	151748189	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	811437	151748189	97502432	75	133903											
FLG	2312	broad.mit.edu	37	chr1	152285620	152285620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgaccctgagtgcctgGtgccgtctcctgattgttcc	12	13	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152285620	T	T	152285620	3	4	160	1	0	0	0	0	1	0	0	0	5979	1261	44	3	10447	3	FLG	1	152285620	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	537431	152285620	96965001	76	133904											
FLG	2312	broad.mit.edu	37	chr1	152285768	152285768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatttaccgattgctcgtGgtgggatccctgccttcctc	9	14	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152285768	T	T	152285768	3	4	160	1	0	0	0	0	1	0	0	0	5979	1348	47	2	10595	2	FLG	1	152285768	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	148	152285768	96964853	77	133905											
FLG2	388698	broad.mit.edu	37	chr1	152329306	152329306	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgtcctcccttaattcctGactgacagcctgactgaata	6	13	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152329306	T	T	152329306	4	4	160	1	0	0	0	0	0	1	0	0	5980	1294	45	3	6223	3	FLG2	1	152329306	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	43538	152329306	96921315	78	133906											
LCE2B	26239	broad.mit.edu	37	chr1	152659518	152659518	+	Frame_Shift_Del	DEL	G	-	-													ctgggggctgctgcaactctGgggctggtggctgctgcctg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152659518	-	-	152659518	7	5	160	1	0	1	0	1	0	0	0	0	8738	1348	47	0	201	0	LCE2B	1	152659518	Frame_Shift_Del	DEL	G	TCGA-50-5933-01A-11D-1753-08	330212	152659518	96591103	79	133907											
KPRP	448834	broad.mit.edu	37	chr1	152733428	152733428	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctcgcccagggcagtGtgagattccagagccacgtc	11	15	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152733428	A	A	152733428	3	1	160	1	0	0	0	0	1	0	0	0	8507	1377	48	4	1366	4	KPRP	1	152733428	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	73910	152733428	96517193	80	133908											
SPRR2B	6701	broad.mit.edu	37	chr1	153043164	153043164	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacaggaggatatttctgcTggcactgctgaggtgggcag	15	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153043164	A	A	153043164	3	1	160	1	0	0	0	0	1	0	0	0	15216	1580	55	5	70	5	SPRR2B	1	153043164	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	309736	153043164	96207457	81	133909											
SLC27A3	11000	broad.mit.edu	37	chr1	153747848	153747848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaatgggcgtgtgccagCgcacgcgcgctccctggaag	17	12	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153747848	A	A	153747848	3	1	160	1	0	0	0	0	1	0	0	0	14641	768	27	3	18	3	SLC27A3	1	153747848	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	704684	153747848	95502773	82	133910											
AQP10	89872	broad.mit.edu	37	chr1	154295602	154295602	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttctctaccatggtgacaGagggaacagagggagctgtg	15	7	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154295602	A	A	154295602	1	1	160	0	1	0	0	0	0	0	0	0	824	957	33	4		4	AQP10	1	154295602	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	547754	154295602	94955019	83	133911											
ADAR	103	broad.mit.edu	37	chr1	154570438	154570438	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggctgaaggggtgggggtCtgggactctgcagtctagag	20	6	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154570438	A	A	154570438	3	1	160	1	0	0	0	0	1	0	0	0	281	912	32	3	1928	3	ADAR	1	154570438	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	274836	154570438	94680183	84	133912											
TTC24	164118	broad.mit.edu	37	chr1	156554984	156554984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaaagaggagaggtcgGcaaacgttccggtgagggct	16	6	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156554984	C	C	156554984	3	2	160	1	0	0	0	0	1	0	0	0	16818	1203	42	4	1443	4	TTC24	1	156554984	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1984546	156554984	92695637	85	133913											
NES	10763	broad.mit.edu	37	chr1	156642540	156642540	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccaccggattctccatcCttagcctctaaactggagtg	8	14	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156642540	T	T	156642540	2	4	160	1	0	0	0	0	0	0	0	1	10432	680	24	4		4	NES	1	156642540	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	87556	156642540	92608081	86	133914											
CD5L	922	broad.mit.edu	37	chr1	157803102	157803102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattatccagccagatgcGgccaaccccagggccatagc	9	15	0	1	rs74121552	byFrequency;by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157803102	T	T	157803102	3	4	160	1	0	0	0	0	1	0	0	0	3057	1116	39	1	132	1	CD5L	1	157803102	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1160562	157803102	91447519	87	133915											
KIRREL	55243	broad.mit.edu	37	chr1	158064446	158064446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccaggaccccaccaatGgctactacaacgtgcgtgcc	9	18	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158064446	T	T	158064446	3	4	160	1	0	0	0	0	1	0	0	0	8395	1348	47	2	1868	2	KIRREL	1	158064446	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	261344	158064446	91186175	88	133916											
CD1E	913	broad.mit.edu	37	chr1	158325207	158325207	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaatttcctgggagccatCtccaggagcagggatccggg	15	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325207	A	A	158325207	3	1	160	1	0	0	0	0	1	0	0	0	3008	913	32	3	483	3	CD1E	1	158325207	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	260761	158325207	90925414	89	133917											
OR10K2	391107	broad.mit.edu	37	chr1	158389847	158389847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatactgatattagagcatcCtggcttgaggagtagttgga	13	5	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158389847	A	A	158389847	3	1	160	1	0	0	0	0	1	0	0	0	11008	680	24	2	130	2	OR10K2	1	158389847	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	64640	158389847	90860774	90	133918											
OR10K1	391109	broad.mit.edu	37	chr1	158435390	158435390	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgtggtgagagagttcgtCgtcctcggcttctcatccct	11	12	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158435390	A	A	158435390	2	1	160	1	0	0	0	0	0	0	0	1	11007	871	31	3		3	OR10K1	1	158435390	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	45543	158435390	90815231	91	133919											
SPTA1	6708	broad.mit.edu	37	chr1	158622476	158622476	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgggaaaagtggaataaaaGaaggagaaaatacagaagag	13	1	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158622476	A	A	158622476	1	1	160	0	1	0	0	0	0	0	0	0	15234	957	33	4		4	SPTA1	1	158622476	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	187086	158622476	90628145	92	133920											
OR6N1	128372	broad.mit.edu	37	chr1	158736362	158736362	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcaggtttcccaacacagtCatgaggtaaatgagaagcaa	10	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158736362	A	A	158736362	3	1	160	1	0	0	0	0	1	0	0	0	11300	826	29	3	830	3	OR6N1	1	158736362	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	113886	158736362	90514259	93	133921											
OR6N1	128372	broad.mit.edu	37	chr1	158736501	158736501	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcatgtccctagatgtgaAgtgtggaaggataggaaaga	13	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158736501	G	G	158736501	1	3	160	0	1	0	0	0	0	0	0	0	11300	87	3	5		5	OR6N1	1	158736501	5'Flank	SNP	A	TCGA-50-5933-01A-11D-1753-08	139	158736501	90514120	94	133922											
CD48	962	broad.mit.edu	37	chr1	160654959	160654959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgttgctgccggagaccaCggtcatatgtaccaagtgac	11	12	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160654959	T	T	160654959	3	4	160	1	0	0	0	0	1	0	0	0	3050	536	19	4	640	4	CD48	1	160654959	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1918458	160654959	88595662	95	133923											
LY9	4063	broad.mit.edu	37	chr1	160765919	160765919	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgcagaagctgtgacaCgtgcggaagctgtggtaagt	14	8	0	2	rs113865465		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160765919	A	A	160765919	1	1	160	0	1	0	0	0	0	0	0	0	9189	551	19	3		3	LY9	1	160765919	5'Flank	SNP	C	TCGA-50-5933-01A-11D-1753-08	110960	160765919	88484702	96	133924											
FCRLA	84824	broad.mit.edu	37	chr1	161681852	161681852	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgcctcctcttctccttcTacaaggatggaaggatagtg	9	13	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161681852	A	A	161681852	3	1	160	1	0	0	0	0	1	0	0	0	5857	1522	53	5	715	5	FCRLA	1	161681852	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	915933	161681852	87568769	97	133925											
DDR2	4921	broad.mit.edu	37	chr1	162724645	162724645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaccgtcatgggaaacaGgtaggaagaagagacatcca	13	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162724645	T	T	162724645	3	4	160	1	0	0	0	0	1	0	0	0	4370	1014	35	2	427	2	DDR2	1	162724645	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1042793	162724645	86525976	98	133926											
DDR2	4921	broad.mit.edu	37	chr1	162724952	162724952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctctctcctcaggtgctgGatggaaatagtaacccctat	8	11	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162724952	A	A	162724952	3	1	160	1	0	0	0	0	1	0	0	0	4370	1174	41	4	438	4	DDR2	1	162724952	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	307	162724952	86525669	99	133927											
LMX1A	4009	broad.mit.edu	37	chr1	165182967	165182967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttctcggacgtttggggcGcttatggtccttgccttcct	13	11	1	0	rs149908681		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165182967	T	T	165182967	3	4	160	1	0	0	0	0	1	0	0	0	8935	1087	38	3	588	3	LMX1A	1	165182967	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2458015	165182967	84067654	100	133928											
ALDH9A1	223	broad.mit.edu	37	chr1	165638193	165638193	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtctcatgtaatatccatCctttaatttgggatcttcag	7	8	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165638193	T	T	165638193	3	4	160	1	0	0	0	0	1	0	0	0	506	855	30	4	395	4	ALDH9A1	1	165638193	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	455226	165638193	83612428	101	133929											
TMCO1	54499	broad.mit.edu	37	chr1	165788762	165788762	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgatgaagttcaggttgTacgagggcactataaaggtc	14	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165788762	C	C	165788762	1	2	160	0	1	0	0	0	0	0	0	0	16118	1653	57	5		5	TMCO1	1	165788762	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	150569	165788762	83461859	102	133930											
ILDR2	387597	broad.mit.edu	37	chr1	166925881	166925881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtatgcaacctgctaatGcacacaggggagaagtgaga	13	7	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166925881	T	T	166925881	1	4	160	0	1	0	0	0	0	0	0	0	7780	1334	46	3		3	ILDR2	1	166925881	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1137119	166925881	82324740	103	133931											
GPA33	10223	broad.mit.edu	37	chr1	167025164	167025165	+	Intron	DNP	CC	AA	AA													aggaatgggaggtctggactCcttgggaagcacaacctctg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	167025165	AA	AA	167025164	1	1	160	0	1	0	0	0	0	0	0	0	6651	870	30	3		3	GPA33	1	167025164	Intron	DNP	CC	TCGA-50-5933-01A-11D-1753-08	99283	167025164	82225457	104	133932											
GPR161	23432	broad.mit.edu	37	chr1	168065747	168065747	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaacaatgcccaagttaccTgtgatcctgttggaaatgct	8	10	0	1	rs28679686		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168065747	A	A	168065747	2	1	160	1	0	0	0	0	0	0	0	1	6730	1594	55	5		5	GPR161	1	168065747	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	1040583	168065747	81184874	105	133933											
XCL1	6375	broad.mit.edu	37	chr1	168550551	168550551	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaccttttatgaaagcaCtgcatgaataaaattattcc	4	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168550551	A	A	168550551	1	1	160	0	1	0	0	0	0	0	0	0	17550	580	20	3		3	XCL1	1	168550551	3'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	484804	168550551	80700070	106	133934											
C1orf156	92342	broad.mit.edu	37	chr1	169762918	169762918	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatacacacaaatctgcctCaattattcaattagttttgt	4	8	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169762918	A	A	169762918	1	1	160	0	1	0	0	0	0	0	0	0	2026	841	29	3		3	C1orf156	1	169762918	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	1212367	169762918	79487703	107	133935											
PAPPA2	60676	broad.mit.edu	37	chr1	176668531	176668531	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatcaaactgcacgtggaTgggaaggtgtcgggggtgaa	16	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176668531	G	G	176668531	3	3	160	1	0	0	0	0	1	0	0	0	11527	1461	51	5	3121	5	PAPPA2	1	176668531	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	6905613	176668531	72582090	108	133936											
RNASEL	6041	broad.mit.edu	37	chr1	182554909	182554909	+	Frame_Shift_Del	DEL	C	-	-													gtggagatccttcagggctgCcccccagtgtgagctctgag							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182554909	-	-	182554909	7	5	160	1	0	1	0	1	0	0	0	0	13527	739	26	0	1216	0	RNASEL	1	182554909	Frame_Shift_Del	DEL	C	TCGA-50-5933-01A-11D-1753-08	5886378	182554909	66695712	109	133937											
RGS8	85397	broad.mit.edu	37	chr1	182635138	182635138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacatcaaaggaatctgcCcacctcgtagcttcttctgt	7	13	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182635138	A	A	182635138	3	1	160	1	0	0	0	0	1	0	0	0	13421	624	22	2	395	2	RGS8	1	182635138	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	80229	182635138	66615483	110	133938											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185269294	185269294	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaataaagttacatattgAtaatttaattatcatattta	2	2	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185269294	T	T	185269294	1	4	160	0	1	0	0	0	0	0	0	0	8000	348	12	5		5	IVNS1ABP	1	185269294	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2634156	185269294	63981327	111	133939											
HMCN1	83872	broad.mit.edu	37	chr1	186022935	186022935	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatttctgcctcatattcTgccatttggacttctttgta	5	10	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186022935	A	A	186022935	1	1	160	0	1	0	0	0	0	0	0	0	7287	1595	55	5		5	HMCN1	1	186022935	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	753641	186022935	63227686	112	133940											
HMCN1	83872	broad.mit.edu	37	chr1	186077635	186077635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgagccccgggatatcaCtgtgttacggaacagacaag	12	9	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186077635	T	T	186077635	3	4	160	1	0	0	0	0	1	0	0	0	7287	565	20	4	11177	4	HMCN1	1	186077635	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	54700	186077635	63172986	113	133941											
TPR	7175	broad.mit.edu	37	chr1	186322924	186322925	+	Missense_Mutation	DNP	CA	TT	TT													agtgagtttctgatttctctCatgaagtgatgttatttctc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	186322925	TT	TT	186322924	3	4	160	1	0	0	0	0	1	0	0	0	16540	835	29	4	4997	4	TPR	1	186322924	Missense_Mutation	DNP	CA	TCGA-50-5933-01A-11D-1753-08	245289	186322924	62927697	114	133942											
CFH	3075	broad.mit.edu	37	chr1	196644997	196644997	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacaagaaacaagaaacaaGaaaatgcatatgctgttcat	6	6	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196644997	T	T	196644997	1	4	160	0	1	0	0	0	0	0	0	0	3313	957	33	3		3	CFH	1	196644997	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	10322073	196644997	52605624	115	133943											
CFHR2	3080	broad.mit.edu	37	chr1	196918575	196918575	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattcttcagttttgtgttAttttcccagcaatgttctgt	6	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196918575	G	G	196918575	1	3	160	0	1	0	0	0	0	0	0	0	3315	464	16	5		5	CFHR2	1	196918575	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	273578	196918575	52332046	116	133944											
KIF14	9928	broad.mit.edu	37	chr1	200569251	200569251	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttccacactctttccaaaGacaaagaaaataacagagtt	4	10	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200569251	C	C	200569251	1	2	160	0	1	0	0	0	0	0	0	0	8346	957	33	4		4	KIF14	1	200569251	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3650676	200569251	48681370	117	133945											
DDX59	83479	broad.mit.edu	37	chr1	200628333	200628333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgagcaactaatatgtaCcagacactgtgttaagcacc	8	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200628333	A	A	200628333	1	1	160	0	1	0	0	0	0	0	0	0	4409	522	18	3		3	DDX59	1	200628333	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	59082	200628333	48622288	118	133946											
NAV1	89796	broad.mit.edu	37	chr1	201750344	201750344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagcccatcagcctgGgccaccctggttccctgaag	10	14	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201750344	T	T	201750344	3	4	160	1	0	0	0	0	1	0	0	0	10277	1232	43	2	1645	2	NAV1	1	201750344	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1122011	201750344	47500277	119	133947											
CHIT1	1118	broad.mit.edu	37	chr1	203186156	203186156	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagcccatcagctttgcccTggcagaacgtgtcttgtcca	10	13	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203186156	A	A	203186156	3	1	160	1	0	0	0	0	1	0	0	0	3377	1580	55	5	142	5	CHIT1	1	203186156	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	1435812	203186156	46064465	120	133948											
CHIT1	1118	broad.mit.edu	37	chr1	203194165	203194165	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaccacacaggtgaccacAgtcaactaacttctgagtgc	7	12	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203194165	C	C	203194165	1	2	160	0	1	0	0	0	0	0	0	0	3377	203	7	5		5	CHIT1	1	203194165	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	8009	203194165	46056456	121	133949											
NFASC	23114	broad.mit.edu	37	chr1	204985517	204985517	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagagtgacgacagcctGgtggactatggcgagggtgg	19	7	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204985517	T	T	204985517	2	4	160	1	0	0	0	0	0	0	0	1	10454	1335	47	2		2	NFASC	1	204985517	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1791352	204985517	44265104	122	133950											
NEK2	4751	broad.mit.edu	37	chr1	211848791	211848791	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtgccaatggtgtacaAcacttcatagtcctcagccc	8	14	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211848791	G	G	211848791	2	3	160	1	0	0	0	0	0	0	0	1	10419	40	2	5		5	NEK2	1	211848791	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	6863274	211848791	37401830	123	133951											
USH2A	7399	broad.mit.edu	37	chr1	215802171	215802171	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccagtccactgttgtgGcccatgatggcttcccacag	9	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215802171	T	T	215802171	2	4	160	1	0	0	0	0	0	0	0	1	17162	1190	42	3		3	USH2A	1	215802171	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	3953380	215802171	33448450	124	133952											
USH2A	7399	broad.mit.edu	37	chr1	215987022	215987022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcactgacatgaaccacGtgtttatgttttcaggttcc	8	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215987022	T	T	215987022	1	4	160	0	1	0	0	0	0	0	0	0	17162	1160	40	3		3	USH2A	1	215987022	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	184851	215987022	33263599	125	133953											
USH2A	7399	broad.mit.edu	37	chr1	216173810	216173810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgtgttctggtggcagCtgtgctgtgtacagtaggac	14	9	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216173810	A	A	216173810	3	1	160	1	0	0	0	0	1	0	0	0	17162	796	28	3	9348	3	USH2A	1	216173810	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	186788	216173810	33076811	126	133954											
USH2A	7399	broad.mit.edu	37	chr1	216405371	216405371	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaatggaagcatcttGgcaaacacactgaccagtca	8	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216405371	C	C	216405371	3	2	160	1	0	0	0	0	1	0	0	0	17162	1357	47	4	12941	4	USH2A	1	216405371	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	231561	216405371	32845250	127	133955											
USH2A	7399	broad.mit.edu	37	chr1	216420237	216420237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttgccgtaggtagaaGtttccctccaaacatttatt	6	8	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216420237	T	T	216420237	3	4	160	1	0	0	0	0	1	0	0	0	17162	1020	36	3	13363	3	USH2A	1	216420237	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	14866	216420237	32830384	128	133956											
C1orf55	163859	broad.mit.edu	37	chr1	226186817	226186817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaataaacgtacccccgcccCggacagacctactccgcacc	7	19	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226186817	A	A	226186817	1	1	160	0	1	0	0	0	0	0	0	0	2069	667	23	1		1	C1orf55	1	226186817	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	9766580	226186817	23063804	129	133957											
PARP1	142	broad.mit.edu	37	chr1	226570958	226570958	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccatagaccaaagaggattTggcttgtccaaatcaaataa	7	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226570958	A	A	226570958	1	1	160	0	1	0	0	0	0	0	0	0	11548	1827	63	5		5	PARP1	1	226570958	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	384141	226570958	22679663	130	133958											
PSEN2	5664	broad.mit.edu	37	chr1	227081775	227081775	+	Frame_Shift_Del	DEL	G	-	-													gtgggcaaggcggctgccacGggcagcggggactggaatac							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	227081775	-	-	227081775	7	5	160	1	0	1	0	1	0	0	0	0	12757	1103	39	0	1174	0	PSEN2	1	227081775	Frame_Shift_Del	DEL	G	TCGA-50-5933-01A-11D-1753-08	510817	227081775	22168846	131	133959											
PRSS38	339501	broad.mit.edu	37	chr1	228004907	228004907	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacctctgttctcacccccaCagggacaagaatatcaaaat	5	13	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228004907	G	G	228004907	1	3	160	0	1	0	0	0	0	0	0	0	12733	493	17	4		4	PRSS38	1	228004907	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	923132	228004907	21245714	132	133960											
WNT3A	89780	broad.mit.edu	37	chr1	228238442	228238442	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtgcagaaggcacggcCgccatctgtggctgcagcag	14	12	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228238442	A	A	228238442	2	1	160	1	0	0	0	0	0	0	0	1	17516	639	23	1		1	WNT3A	1	228238442	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	233535	228238442	21012179	133	133961											
NUP133	55746	broad.mit.edu	37	chr1	229593873	229593873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagttaattgatggcatgaCcaatttgtaaatccttttgc	8	6	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229593873	A	A	229593873	1	1	160	0	1	0	0	0	0	0	0	0	10849	522	18	3		3	NUP133	1	229593873	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1355431	229593873	19656748	134	133962											
C1orf131	128061	broad.mit.edu	37	chr1	231376721	231376721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcaacacaggagacccaCgttcctcaaatctgttctcc	8	15	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231376721	A	A	231376721	1	1	160	0	1	0	0	0	0	0	0	0	2018	551	19	3		3	C1orf131	1	231376721	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1782848	231376721	17873900	135	133963											
EXOC8	149371	broad.mit.edu	37	chr1	231472329	231472329	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctagcacctcagtgagctgtCgaactcgctcctccactttg	8	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231472329	T	T	231472329	3	4	160	1	0	0	0	0	1	0	0	0	5353	884	31	4	1018	4	EXOC8	1	231472329	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	95608	231472329	17778292	136	133964											
ACTN2	88	broad.mit.edu	37	chr1	236881160	236881160	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttggttttctttgcagacCttcactgcctggtgtaactc	9	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236881160	A	A	236881160	2	1	160	1	0	0	0	0	0	0	0	1	205	668	24	2		2	ACTN2	1	236881160	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	5408831	236881160	12369461	137	133965											
RYR2	6262	broad.mit.edu	37	chr1	237620007	237620007	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagagtcttggaaatcCattctgaattctctgtatga	10	7	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237620007	G	G	237620007	2	3	160	1	0	0	0	0	0	0	0	1	13880	581	21	4		4	RYR2	1	237620007	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	738847	237620007	11630614	138	133966											
RYR2	6262	broad.mit.edu	37	chr1	237664013	237664013	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgttttccccccaataggtTgtattgctcgtactgtaagc	8	10	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237664013	A	A	237664013	3	1	160	1	0	0	0	0	1	0	0	0	13880	1812	63	5	2288	5	RYR2	1	237664013	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	44006	237664013	11586608	139	133967											
RYR2	6262	broad.mit.edu	37	chr1	237806676	237806676	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaattaggtccattttgaGatccctcattcccctgggag	9	11	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237806676	C	C	237806676	3	2	160	1	0	0	0	0	1	0	0	0	13880	942	33	4	7461	4	RYR2	1	237806676	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	142663	237806676	11443945	140	133968											
RYR2	6262	broad.mit.edu	37	chr1	237817625	237817625	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatattactgcctgcctggaGggtggggaaactttggtgct	14	7	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237817625	T	T	237817625	3	4	160	1	0	0	0	0	1	0	0	0	13880	1000	35	2	8082	2	RYR2	1	237817625	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	10949	237817625	11432996	141	133969											
RYR2	6262	broad.mit.edu	37	chr1	237896933	237896933	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaacaaaggttattttaAgcagcgatgatacgtgtgca	10	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237896933	T	T	237896933	1	4	160	0	1	0	0	0	0	0	0	0	13880	87	3	5		5	RYR2	1	237896933	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	79308	237896933	11353688	142	133970											
RYR2	6262	broad.mit.edu	37	chr1	237941962	237941962	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgtttgtctgtttatgctCcagggtccttgcactgggaa	12	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237941962	A	A	237941962	1	1	160	0	1	0	0	0	0	0	0	0	13880	870	30	3		3	RYR2	1	237941962	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	45029	237941962	11308659	143	133971											
CHRM3	1131	broad.mit.edu	37	chr1	240072465	240072465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaagaggcgcaagcagCagtaccagcagagacagtcg	12	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240072465	A	A	240072465	3	1	160	1	0	0	0	0	1	0	0	0	3409	711	25	3	1716	3	CHRM3	1	240072465	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2130503	240072465	9178156	144	133972											
AKT3	10000	broad.mit.edu	37	chr1	243736348	243736348	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctcgacaaatggaaaaaCagctgcagggtaaacagcag	10	9	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	243736348	G	G	243736348	2	3	160	1	0	0	0	0	0	0	0	1	481	465	17	4		4	AKT3	1	243736348	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	3663883	243736348	5514273	145	133973											
KIF26B	55083	broad.mit.edu	37	chr1	245849484	245849484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcccatgggctcccccCggctgggcatcgccagcctg	13	19	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245849484	A	A	245849484	2	1	160	1	0	0	0	0	0	0	0	1	8365	643	23	1		1	KIF26B	1	245849484	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2113136	245849484	3401137	146	133974											
AHCTF1	25909	broad.mit.edu	37	chr1	247051677	247051677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagactctaaatgatagCacattactgcaaacctacat	5	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247051677	A	A	247051677	1	1	160	0	1	0	0	0	0	0	0	0	408	725	25	3		3	AHCTF1	1	247051677	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1202193	247051677	2198944	147	133975											
OR14A16	284532	broad.mit.edu	37	chr1	247978993	247978993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttattggtagaaaacccCataaggataaattcagtcac	6	7	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978993	A	A	247978993	3	1	160	1	0	0	0	0	1	0	0	0	11039	594	21	2	894	2	OR14A16	1	247978993	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	927316	247978993	1271628	148	133976											
TRIM58	25893	broad.mit.edu	37	chr1	248023844	248023844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtttaagttgacttttGtatttcctcacacatctgtg	7	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248023844	T	T	248023844	1	4	160	0	1	0	0	0	0	0	0	0	16656	1392	48	3		3	TRIM58	1	248023844	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	44851	248023844	1226777	149	133977											
OR2L13	284521	broad.mit.edu	37	chr1	248166970	248166970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatcatttcttctgtgatGtcccagcaatggtgactctg	8	10	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248166970	T	T	248166970	1	4	160	0	1	0	0	0	0	0	0	0	11100	1392	48	3		3	OR2L13	1	248166970	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	143126	248166970	1083651	150	133978			1	102		3	3	354	N	G_A	8.135604e-05
OR2L13	284521	broad.mit.edu	37	chr1	248167153	248167153	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaggcctacctgacctgcAgcacccacctcactgtagta	8	15	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248167153	T	T	248167153	1	4	160	0	1	0	0	0	0	0	0	0	11100	203	7	5		5	OR2L13	1	248167153	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	183	248167153	1083468	151	133979			1	102		3	3	354	N	G_A	8.135604e-05
OR2L13	284521	broad.mit.edu	37	chr1	248167323	248167323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaacaaggaggtgatGggggccctgacacgagtgag	18	7	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248167323	T	T	248167323	1	4	160	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248167323	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	170	248167323	1083298	152	133980			1	102		3	3	354	N	G_A	8.135604e-05
OR2L2	26246	broad.mit.edu	37	chr1	248202135	248202135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgttgacgctagcctgcaCagacacttgggtctatgaga	11	9	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248202135	A	A	248202135	3	1	160	1	0	0	0	0	1	0	0	0	11101	478	17	3	568	3	OR2L2	1	248202135	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	34812	248202135	1048486	153	133981											
OR2L13	284521	broad.mit.edu	37	chr1	248263100	248263100	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgagtaaaatgatgtgtgtGaagatgattggaggctcttg	14	2	1	5			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248263100	T	T	248263100	2	4	160	1	0	0	0	0	0	0	0	1	11100	1277	45	3		3	OR2L13	1	248263100	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	60965	248263100	987521	154	133982											
OR2M3	127062	broad.mit.edu	37	chr1	248367167	248367167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacggcccacatctgatcgCtccccaacacaggacaagat	7	15	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248367167	A	A	248367167	2	1	160	1	0	0	0	0	0	0	0	1	11105	784	28	3		3	OR2M3	1	248367167	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	104067	248367167	883454	155	133983											
TMEM18	129787	broad.mit.edu	37	chr2	675509	675509	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgtgttgttttactcaCctagacacagaaagtgcccg	9	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	675509	A	A	675509	5	1	160	1	0	0	0	0	0	0	1	0	16221	521	18	3	259	3	TMEM18	2	675509	Splice_Site	SNP	C	TCGA-50-5933-01A-11D-1753-08		675509	242523864	156	133984											
PXDN	7837	broad.mit.edu	37	chr2	1653320	1653320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgttacaggtgccgtcGtgcgtccggtacttctggtg	15	9	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1653320	T	T	1653320	3	4	160	1	0	0	0	0	1	0	0	0	12955	1136	40	3	2235	3	PXDN	2	1653320	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	977811	1653320	241546053	157	133985											
GRHL1	29841	broad.mit.edu	37	chr2	10136041	10136041	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggggccgtacggcacagaaGatgactttgctgtccctcct	13	12	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10136041	T	T	10136041	3	4	160	1	0	0	0	0	1	0	0	0	6829	942	33	3	1584	3	GRHL1	2	10136041	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	8482721	10136041	233063332	158	133986											
NT5C1B	93034	broad.mit.edu	37	chr2	18766474	18766474	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcccctagcttccccataaGcatttcacacgtttttattt	3	14	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18766474	C	C	18766474	1	2	160	0	1	0	0	0	0	0	0	0	10781	986	34	4		4	NT5C1B	2	18766474	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	8630433	18766474	224432899	159	133987											
APOB	338	broad.mit.edu	37	chr2	21247745	21247745	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcgtaagggagtctgggCgatctaaaaaaaaaccaacg	12	7	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21247745	A	A	21247745	1	1	160	0	1	0	0	0	0	0	0	0	787	783	27	3		3	APOB	2	21247745	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2481271	21247745	221951628	160	133988											
NCOA1	8648	broad.mit.edu	37	chr2	24929509	24929509	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccgagtaaatccctcggtCaatcctagtatctctccagc	6	16	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24929509	T	T	24929509	2	4	160	1	0	0	0	0	0	0	0	1	10323	813	29	4		4	NCOA1	2	24929509	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	3681764	24929509	218269864	161	133989											
HADHB	3032	broad.mit.edu	37	chr2	26507175	26507175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgatgtgagtagagcaGgagtggacctgcatatttta	12	4	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26507175	T	T	26507175	1	4	160	0	1	0	0	0	0	0	0	0	7010	1015	35	2		2	HADHB	2	26507175	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1577666	26507175	216692198	162	133990											
C2orf53	339779	broad.mit.edu	37	chr2	27360020	27360020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctctttgggccagggcaaGgcctgggcttcagggaggta	17	10	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27360020	T	T	27360020	3	4	160	1	0	0	0	0	1	0	0	0	2196	1000	35	2	64	2	C2orf53	2	27360020	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	852845	27360020	215839353	163	133991											
CAD	790	broad.mit.edu	37	chr2	27454796	27454796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagctacttacgctcagGcttttagatgggctggcagt	13	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27454796	T	T	27454796	1	4	160	0	1	0	0	0	0	0	0	0	2591	1218	42	3		3	CAD	2	27454796	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	94776	27454796	215744577	164	133992											
DNAJC5G	285126	broad.mit.edu	37	chr2	27501140	27501140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggagcacttaaaccaccaCctgagcaggatagtgggaga	13	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27501140	T	T	27501140	3	4	160	1	0	0	0	0	1	0	0	0	4692	507	18	4	470	4	DNAJC5G	2	27501140	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	46344	27501140	215698233	165	133993											
ALK	238	broad.mit.edu	37	chr2	29450338	29450338	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgccagggacccataatTgtgcctctgtatcctggata	10	12	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29450338	A	A	29450338	1	1	160	0	1	0	0	0	0	0	0	0	525	1827	63	5		5	ALK	2	29450338	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1949198	29450338	213749035	166	133994											
XDH	7498	broad.mit.edu	37	chr2	31573033	31573033	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacagccgcccagtgccCcggatgttggggattttata	12	11	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31573033	T	T	31573033	2	4	160	1	0	0	0	0	0	0	0	1	17553	610	22	4		4	XDH	2	31573033	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2122695	31573033	211626340	167	133995											
LTBP1	4052	broad.mit.edu	37	chr2	33488323	33488323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctcaatgcacataacggGctttaattttctttttatcc	5	9	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33488323	T	T	33488323	1	4	160	0	1	0	0	0	0	0	0	0	9160	1218	42	3		3	LTBP1	2	33488323	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1915290	33488323	209711050	168	133996											
EPAS1	2034	broad.mit.edu	37	chr2	46611573	46611573	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgctctattggtatccccCagtcacaaagaagtagacac	8	12	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46611573	G	G	46611573	1	3	160	0	1	0	0	0	0	0	0	0	5192	609	21	4		4	EPAS1	2	46611573	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	13123250	46611573	196587800	169	133997											
FSHR	2492	broad.mit.edu	37	chr2	49190968	49190968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagtcatagtcaaactcaGtgtacgtcatgtcaaatcct	6	9	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49190968	T	T	49190968	3	4	160	1	0	0	0	0	1	0	0	0	6133	1029	36	3	1099	3	FSHR	2	49190968	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2579395	49190968	194008405	170	133998											
NRXN1	9378	broad.mit.edu	37	chr2	50149280	50149280	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaggataaggatgcacagGgcggcagcggctactatccc	15	10	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50149280	C	C	50149280	2	2	160	1	0	0	0	0	0	0	0	1	10760	1219	43	4		4	NRXN1	2	50149280	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	958312	50149280	193050093	171	133999											
ADD2	119	broad.mit.edu	37	chr2	70890466	70890466	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccagggtcctactctatcCctccttagccctgtgcttgc	8	16	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70890466	A	A	70890466	1	1	160	0	1	0	0	0	0	0	0	0	305	638	22	2		2	ADD2	2	70890466	3'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	20741186	70890466	172308907	172	134000											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71361141	71361141	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccagttgaaagtgatgaaGacataacaaatgttcatgat	8	5	1	5			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71361141	T	T	71361141	3	4	160	1	0	0	0	0	1	0	0	0	9819	942	33	3	842	3	MPHOSPH10	2	71361141	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	470675	71361141	171838232	173	134001											
CCT7	10574	broad.mit.edu	37	chr2	73476034	73476034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcagcatgttttatttgGtgggggcagatgggtatatt	14	3	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73476034	T	T	73476034	1	4	160	0	1	0	0	0	0	0	0	0	2989	1276	44	3		3	CCT7	2	73476034	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2114893	73476034	169723339	174	134002											
IL1RL2	8808	broad.mit.edu	37	chr2	102818106	102818106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggacagagggaactacGcgtgtcaagccatactgaca	12	10	1	3	rs142080534		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102818106	T	T	102818106	3	4	160	1	0	0	0	0	1	0	0	0	7734	1087	38	3	594	3	IL1RL2	2	102818106	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	29342072	102818106	140381267	175	134003											
SLC9A4	389015	broad.mit.edu	37	chr2	103120017	103120017	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcgttgtggggcttggaggGgtattgtttggcatcgtttt	16	4	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103120017	C	C	103120017	2	2	160	1	0	0	0	0	0	0	0	1	14830	1219	43	4		4	SLC9A4	2	103120017	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	301911	103120017	140079356	176	134004											
ST6GAL2	84620	broad.mit.edu	37	chr2	107459724	107459724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccgcttcccgcggaagCgcaccccgtgcttgttggcg	12	18	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107459724	A	A	107459724	3	1	160	1	0	0	0	0	1	0	0	0	15340	768	27	3	986	3	ST6GAL2	2	107459724	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4339707	107459724	135739649	177	134005											
ANAPC1	64682	broad.mit.edu	37	chr2	112592044	112592044	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacaactctgtggtttaCagagatgccctagttttctg	8	9	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112592044	G	G	112592044	1	3	160	0	1	0	0	0	0	0	0	0	598	493	17	4		4	ANAPC1	2	112592044	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5132320	112592044	130607329	178	134006											
RABL2A	11159	broad.mit.edu	37	chr2	114391843	114391843	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccaagacatgctgaccctCaggaaagaggaaatgggaga	14	8	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114391843	G	G	114391843	1	3	160	0	1	0	0	0	0	0	0	0	13078	841	29	4		4	RABL2A	2	114391843	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1799799	114391843	128807530	179	134007											
PTPN4	5775	broad.mit.edu	37	chr2	120714508	120714508	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagatacagagatatttcgcCttgtaagtatcttattgtct	7	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120714508	T	T	120714508	3	4	160	1	0	0	0	0	1	0	0	0	12898	681	24	4	2147	4	PTPN4	2	120714508	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	6322665	120714508	122484865	180	134008											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204494	125204494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaagggcgagacggatGccttagacattgactatgag	13	9	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125204494	T	T	125204494	3	4	160	1	0	0	0	0	1	0	0	0	3682	1319	46	3	920	3	CNTNAP5	2	125204494	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4489986	125204494	117994879	181	134009											
CNTNAP5	129684	broad.mit.edu	37	chr2	125521466	125521466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttccctgcagtgtgccCtagtcttgaaaattatccac	6	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521466	A	A	125521466	1	1	160	0	1	0	0	0	0	0	0	0	3682	696	24	2		2	CNTNAP5	2	125521466	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	316972	125521466	117677907	182	134010											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530543	125530543	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaggagcaccagggagAcgtcggaggagggccatttt	15	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125530543	T	T	125530543	3	4	160	1	0	0	0	0	1	0	0	0	3682	275	10	5	2764	5	CNTNAP5	2	125530543	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	9077	125530543	117668830	183	134011											
MYO7B	4648	broad.mit.edu	37	chr2	128322930	128322930	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggcatggtgcacaacctCctgatccgctaccagcagca	10	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128322930	A	A	128322930	2	1	160	1	0	0	0	0	0	0	0	1	10177	842	30	3		3	MYO7B	2	128322930	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2792387	128322930	114876443	184	134012											
MYO7B	4648	broad.mit.edu	37	chr2	128346079	128346079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagttagcagagaccaaGctgggccatgggaccatccg	14	10	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128346079	T	T	128346079	3	4	160	1	0	0	0	0	1	0	0	0	10177	962	34	3	1857	3	MYO7B	2	128346079	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	23149	128346079	114853294	185	134013											
PLEKHB2	55041	broad.mit.edu	37	chr2	131948375	131948375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcttaaagtatgtttctGctacatttcagtagaaggct	7	6	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131948375	T	T	131948375	1	4	160	0	1	0	0	0	0	0	0	0	12160	1334	46	3		3	PLEKHB2	2	131948375	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3602296	131948375	111250998	186	134014											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110108	132110108	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctcccgggcccatgttaatCccgggcatgggggggccgag	17	13	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132110108	G	G	132110108	1	3	160	0	1	0	0	0	0	0	0	0	12160	870	30	4		4	PLEKHB2	2	132110108	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	161733	132110108	111089265	187	134015											
NCKAP5	344148	broad.mit.edu	37	chr2	133541158	133541158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaggacgtcatttccaGtggctcatgggttgaaggag	15	6	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133541158	T	T	133541158	3	4	160	1	0	0	0	0	1	0	0	0	10318	1020	36	3	2531	3	NCKAP5	2	133541158	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1431050	133541158	109658215	188	134016											
MGAT5	4249	broad.mit.edu	37	chr2	135075046	135075046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggcttacaagaatgttaGgcttgtgttttatagatctc	9	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135075046	A	A	135075046	1	1	160	0	1	0	0	0	0	0	0	0	9641	1015	35	4		4	MGAT5	2	135075046	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1533888	135075046	108124327	189	134017											
THSD7B	80731	broad.mit.edu	37	chr2	137928454	137928454	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatctgtttccctgatcatGgaaaatgtggcctgggacat	12	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137928454	A	A	137928454	3	1	160	1	0	0	0	0	1	0	0	0	16003	1349	47	4	1598	4	THSD7B	2	137928454	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2853408	137928454	105270919	190	134018											
LRP1B	53353	broad.mit.edu	37	chr2	141083415	141083415	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctcaaagtcagcccaatAtatgcgttcactaaaataat	6	9	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141083415	G	G	141083415	3	3	160	1	0	0	0	0	1	0	0	0	9042	449	16	5	1591	5	LRP1B	2	141083415	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	3154961	141083415	102115958	191	134019											
LRP1B	53353	broad.mit.edu	37	chr2	141232702	141232702	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaatatttatgttactggaCcaacctttgtgtctatgaga	8	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141232702	G	G	141232702	1	3	160	0	1	0	0	0	0	0	0	0	9042	522	18	4		4	LRP1B	2	141232702	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	149287	141232702	101966671	192	134020											
ZEB2	9839	broad.mit.edu	37	chr2	145157460	145157460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgcattggactctgagCagatggatgaactcctaaag	12	8	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145157460	A	A	145157460	3	1	160	1	0	0	0	0	1	0	0	0	17750	710	25	3	2362	3	ZEB2	2	145157460	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	3924758	145157460	98041913	193	134021											
GALNT13	114805	broad.mit.edu	37	chr2	155099310	155099310	+	Missense_Mutation	SNP	T	G	G													tgggttaatacgtgcccgtcTtcgaggagcagctgcttcaa							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155099310	G	G	155099310	3	3	160	1	0	0	0	0	1	0	0	0	6273	1609	56	5	592	5	GALNT13	2	155099310	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	9941850	155099310	88100063	194	134022	573	2									
GALNT13	114805	broad.mit.edu	37	chr2	155099313	155099313	+	Missense_Mutation	SNP	G	A	A													gttaatacgtgcccgtcttcGaggagcagctgcttcaaaag							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155099313	A	A	155099313	3	1	160	1	0	0	0	0	1	0	0	0	6273	1058	37	4	595	4	GALNT13	2	155099313	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3	155099313	88100060	195	134023	573	2									
GALNT13	114805	broad.mit.edu	37	chr2	155158101	155158101	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctacatcatatccccAggtacacaattctgacattt	3	12	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155158101	C	C	155158101	2	2	160	1	0	0	0	0	0	0	0	1	6273	202	7	5		5	GALNT13	2	155158101	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	58788	155158101	88041272	196	134024											
KCNJ3	3760	broad.mit.edu	37	chr2	155555778	155555778	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcatcatcctcttcctctTccagtccatcctgggctcca	7	17	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155555778	A	A	155555778	3	1	160	1	0	0	0	0	1	0	0	0	8122	1783	62	5	493	5	KCNJ3	2	155555778	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	397677	155555778	87643595	197	134025											
LY75	4065	broad.mit.edu	37	chr2	160735892	160735892	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgacctagctttgaaaggaGacaaaaacatttgcttggaa	9	7	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160735892	A	A	160735892	1	1	160	0	1	0	0	0	0	0	0	0	9187	957	33	4		4	LY75	2	160735892	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	5180114	160735892	82463481	198	134026											
SLC4A10	57282	broad.mit.edu	37	chr2	162751275	162751275	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggatcaggttactgttctCcctcctggagaatgggatcc	11	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162751275	T	T	162751275	2	4	160	1	0	0	0	0	0	0	0	1	14765	842	30	4		4	SLC4A10	2	162751275	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2015383	162751275	80448098	199	134027											
GRB14	2888	broad.mit.edu	37	chr2	165365354	165365354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgaaaaactgcaaatgCcgcggttccttaaaaaaaaa	7	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165365354	A	A	165365354	2	1	160	1	0	0	0	0	0	0	0	1	6823	726	26	3		3	GRB14	2	165365354	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2614079	165365354	77834019	200	134028											
SCN3A	6328	broad.mit.edu	37	chr2	165987815	165987815	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaccaagctccattaaaCtgaggctgacaataattcca	6	11	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165987815	T	T	165987815	3	4	160	1	0	0	0	0	1	0	0	0	14031	565	20	4	3550	4	SCN3A	2	165987815	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	622461	165987815	77211558	201	134029											
CSRNP3	80034	broad.mit.edu	37	chr2	166451702	166451702	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggggacagtgtcaatccaTccacttctagtcattttacc	8	11	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166451702	C	C	166451702	3	2	160	1	0	0	0	0	1	0	0	0	3999	1435	50	5	129	5	CSRNP3	2	166451702	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	463887	166451702	76747671	202	134030											
XIRP2	129446	broad.mit.edu	37	chr2	168114534	168114534	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggactttattcctaatgaagAaccaaatatgtgtaaaaata	6	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168114534	T	T	168114534	1	4	160	0	1	0	0	0	0	0	0	0	17557	246	9	5		5	XIRP2	2	168114534	3'UTR	SNP	A	TCGA-50-5933-01A-11D-1753-08	1662832	168114534	75084839	203	134031											
ABCB11	8647	broad.mit.edu	37	chr2	169780148	169780148	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggtcaactgatgggggatCcagtggtgactagtttgtag	16	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169780148	G	G	169780148	3	3	160	1	0	0	0	0	1	0	0	0	42	855	30	4	19	4	ABCB11	2	169780148	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1665614	169780148	73419225	204	134032											
LRP2	4036	broad.mit.edu	37	chr2	169985444	169985444	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccactctgctcagaataatCtaagtgtgtgtccaatttaa	7	9	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169985444	A	A	169985444	1	1	160	0	1	0	0	0	0	0	0	0	9043	928	32	3		3	LRP2	2	169985444	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	205296	169985444	73213929	205	134033											
LRP2	4036	broad.mit.edu	37	chr2	170097559	170097559	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgccatcacacactacactCagattcacacagatgttatg	5	12	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170097559	A	A	170097559	2	1	160	1	0	0	0	0	0	0	0	1	9043	813	29	3		3	LRP2	2	170097559	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	112115	170097559	73101814	206	134034											
MYO3B	140469	broad.mit.edu	37	chr2	171034881	171034881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggcagatgcagctgccCtggctggtgggcagtggagg	19	8	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171034881	A	A	171034881	1	1	160	0	1	0	0	0	0	0	0	0	10171	696	24	2		2	MYO3B	2	171034881	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	937322	171034881	72164492	207	134035											
MYO3B	140469	broad.mit.edu	37	chr2	171243919	171243919	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcttgttcttaacattcCcctaccctccccaagggcaa	4	16	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171243919	T	T	171243919	1	4	160	0	1	0	0	0	0	0	0	0	10171	638	22	4		4	MYO3B	2	171243919	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	209038	171243919	71955454	208	134036											
OSBPL6	114880	broad.mit.edu	37	chr2	179255873	179255873	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggaaggcggtgtaccGgctgtttggaaagtggcatg	20	5	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179255873	A	A	179255873	3	1	160	1	0	0	0	0	1	0	0	0	11375	1116	39	4	2575	4	OSBPL6	2	179255873	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	8011954	179255873	63943500	209	134037											
TTN	7273	broad.mit.edu	37	chr2	179395788	179395788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgaagagatctcaaagGttgatttgtactttgtggtg	13	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179395788	T	T	179395788	3	4	160	1	0	0	0	0	1	0	0	0	16861	1261	44	3	2445	3	TTN	2	179395788	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	139915	179395788	63803585	210	134038											
TTN	7273	broad.mit.edu	37	chr2	179424097	179424097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacaccaaactcattttctCcagagactctgaagtaatag	5	11	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179424097	A	A	179424097	3	1	160	1	0	0	0	0	1	0	0	0	16861	855	30	3	21365	3	TTN	2	179424097	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	28309	179424097	63775276	211	134039											
TTN	7273	broad.mit.edu	37	chr2	179427802	179427802	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtagcacttgcacgcagaAcgaccacctttctgagatca	8	12	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179427802	G	G	179427802	3	3	160	1	0	0	0	0	1	0	0	0	16861	43	2	5	25070	5	TTN	2	179427802	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	3705	179427802	63771571	212	134040											
TTN	7273	broad.mit.edu	37	chr2	179578925	179578925	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgaaatgtaaaagataTccatattttaaactcaaatt	5	4	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179578925	A	A	179578925	1	1	160	0	1	0	0	0	0	0	0	0	16861	1450	50	5		5	TTN	2	179578925	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	151123	179578925	63620448	213	134041											
TTN	7273	broad.mit.edu	37	chr2	179640673	179640673	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaacttcacaacttctttgGtttcagtggtgtcaacaggt	8	9	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179640673	C	C	179640673	3	2	160	1	0	0	0	0	1	0	0	0	16861	1261	44	4	105410	4	TTN	2	179640673	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	61748	179640673	63558700	214	134042											
CERKL	375298	broad.mit.edu	37	chr2	182412284	182412284	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaacagttaattggataCcctggaaaaaaaatggtcta	7	7	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182412284	A	A	182412284	1	1	160	0	1	0	0	0	0	0	0	0	3298	522	18	3		3	CERKL	2	182412284	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2771611	182412284	60787089	215	134043											
FRZB	2487	broad.mit.edu	37	chr2	183699728	183699728	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaatagtcacaagcacAtatcaccagggtcattattt	6	8	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183699728	G	G	183699728	1	3	160	0	1	0	0	0	0	0	0	0	6125	232	8	5		5	FRZB	2	183699728	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1287444	183699728	59499645	216	134044											
ZSWIM2	151112	broad.mit.edu	37	chr2	187698752	187698752	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgatattctatgcattcgGtacacctaaaaatacaaaac	5	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187698752	C	C	187698752	3	2	160	1	0	0	0	0	1	0	0	0	18370	1261	44	4	1168	4	ZSWIM2	2	187698752	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3999024	187698752	55500621	217	134045											
ZSWIM2	151112	broad.mit.edu	37	chr2	187713785	187713785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgctactcagcgcctGgtcttggtgccagctgagcc	13	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187713785	T	T	187713785	3	4	160	1	0	0	0	0	1	0	0	0	18370	1357	47	2	1864	2	ZSWIM2	2	187713785	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	15033	187713785	55485588	218	134046											
COL5A2	1290	broad.mit.edu	37	chr2	189928079	189928079	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgtcacctttgcttacTatcatgttacataaatttta	4	7	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189928079	A	A	189928079	1	1	160	0	1	0	0	0	0	0	0	0	3729	1537	53	5		5	COL5A2	2	189928079	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	2214294	189928079	53271294	219	134047											
COL5A2	1290	broad.mit.edu	37	chr2	189951477	189951477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccttgtaaaccctgtggtCcccttgggccaacaggaccc	10	15	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189951477	A	A	189951477	3	1	160	1	0	0	0	0	1	0	0	0	3729	855	30	3	4018	3	COL5A2	2	189951477	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	23398	189951477	53247896	220	134048											
TMEFF2	23671	broad.mit.edu	37	chr2	192863879	192863879	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attatcataagatttcccatCagaagcgcagaggggattga	10	7	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192863879	A	A	192863879	3	1	160	1	0	0	0	0	1	0	0	0	16137	826	29	3	552	3	TMEFF2	2	192863879	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2912402	192863879	50335494	221	134049											
TMEFF2	23671	broad.mit.edu	37	chr2	193059059	193059059	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcggagttaaagggtcgggGacgggggttctggacttacc	18	7	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193059059	T	T	193059059	1	4	160	0	1	0	0	0	0	0	0	0	16137	1189	41	3		3	TMEFF2	2	193059059	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	195180	193059059	50140314	222	134050											
DNAH7	56171	broad.mit.edu	37	chr2	196618999	196618999	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagctgaggaaagtatgctAgaatgtcatgtttttgttca	10	5	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196618999	G	G	196618999	1	3	160	0	1	0	0	0	0	0	0	0	4646	435	15	5		5	DNAH7	2	196618999	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	3559940	196618999	46580374	223	134051											
SGOL2	151246	broad.mit.edu	37	chr2	201436413	201436413	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggggtgcagaagatccCggttttattttcaataatga	10	5	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201436413	T	T	201436413	2	4	160	1	0	0	0	0	0	0	0	1	14330	639	23	4		4	SGOL2	2	201436413	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	4817414	201436413	41762960	224	134052											
AOX1	316	broad.mit.edu	37	chr2	201459946	201459946	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctagtggcagggctattctAgaaagagaattacataacac	9	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201459946	T	T	201459946	1	4	160	0	1	0	0	0	0	0	0	0	731	435	15	5		5	AOX1	2	201459946	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	23533	201459946	41739427	225	134053											
MDH1B	130752	broad.mit.edu	37	chr2	207619756	207619756	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggagctgtcttcagttttCtggccagtatggctttcgct	11	9	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207619756	A	A	207619756	3	1	160	1	0	0	0	0	1	0	0	0	9502	913	32	3	701	3	MDH1B	2	207619756	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	6159810	207619756	35579617	226	134054											
CRYGA	1418	broad.mit.edu	37	chr2	209025704	209025704	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaatagatctcagggagacGgaacagttctggaacacagg	14	7	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209025704	C	C	209025704	3	2	160	1	0	0	0	0	1	0	0	0	3946	1116	39	4	179	4	CRYGA	2	209025704	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1405948	209025704	34173669	227	134055											
PIKFYVE	200576	broad.mit.edu	37	chr2	209169637	209169637	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtggacagtgactcagcCgcttctatcagcctgaacgt	10	12	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209169637	T	T	209169637	2	4	160	1	0	0	0	0	0	0	0	1	12019	639	23	4		4	PIKFYVE	2	209169637	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	143933	209169637	34029736	228	134056											
PTH2R	5746	broad.mit.edu	37	chr2	209315480	209315480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctgatttcagggtttcCagcagcatttgttgcagcat	9	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209315480	A	A	209315480	3	1	160	1	0	0	0	0	1	0	0	0	12866	594	21	2	890	2	PTH2R	2	209315480	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	145843	209315480	33883893	229	134057											
SLC11A1	6556	broad.mit.edu	37	chr2	219256057	219256058	+	Intron	DNP	CC	AA	AA													tgacccagagaggctccccgCctcgggcagggccaccggtc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	219256058	AA	AA	219256057	1	1	160	0	1	0	0	0	0	0	0	0	14493	754	26	3		3	SLC11A1	2	219256057	Intron	DNP	CC	TCGA-50-5933-01A-11D-1753-08	9940577	219256057	23943316	230	134058											
RQCD1	9125	broad.mit.edu	37	chr2	219458847	219458847	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagggcacgtgaagcactcAgacagtgcctccctgaccag	12	13	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219458847	T	T	219458847	4	4	160	1	0	0	0	0	0	1	0	0	13781	180	7	5	778	5	RQCD1	2	219458847	Nonsense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	202790	219458847	23740526	231	134059											
NHEJ1	79840	broad.mit.edu	37	chr2	219942058	219942058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctatcgattccttgcagGgaagcactgtttgaggtatg	13	7	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219942058	T	T	219942058	2	4	160	1	0	0	0	0	0	0	0	1	10497	1219	43	2		2	NHEJ1	2	219942058	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	483211	219942058	23257315	232	134060											
TUBA4A	7277	broad.mit.edu	37	chr2	220115780	220115780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgatgtctaggttgcggCggcagatgtcatagattgct	14	8	2	2	rs146165952	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220115780	A	A	220115780	3	1	160	1	0	0	0	0	1	0	0	0	16875	768	27	3	709	3	TUBA4A	2	220115780	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	173722	220115780	23083593	233	134061											
DNPEP	23549	broad.mit.edu	37	chr2	220250827	220250827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggtagggcactgcagCcagccaggccaggtcagccc	14	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220250827	A	A	220250827	1	1	160	0	1	0	0	0	0	0	0	0	4719	754	26	3		3	DNPEP	2	220250827	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	135047	220250827	22948546	234	134062											
COL4A4	1286	broad.mit.edu	37	chr2	227912327	227912327	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatttggtctcatacaggtGacagtaacgtttatggtatt	9	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227912327	A	A	227912327	1	1	160	0	1	0	0	0	0	0	0	0	3725	1305	45	4		4	COL4A4	2	227912327	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	7661500	227912327	15287046	235	134063											
SP140L	93349	broad.mit.edu	37	chr2	231222756	231222756	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttctgtaagtgctcctgtAaagtagaaaaggagaggaga	12	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231222756	G	G	231222756	1	3	160	0	1	0	0	0	0	0	0	0	15077	377	13	5		5	SP140L	2	231222756	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	3310429	231222756	11976617	236	134064											
CHRNG	1146	broad.mit.edu	37	chr2	233405028	233405028	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgcttggccccattggtggCctgtggggactggcactgaa	15	10	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233405028	G	G	233405028	1	3	160	0	1	0	0	0	0	0	0	0	3427	754	26	4		4	CHRNG	2	233405028	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2182272	233405028	9794345	237	134065											
TRPM8	79054	broad.mit.edu	37	chr2	234891682	234891682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgactccgctctcctGtcctcccctgacagctgatc	8	18	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234891682	T	T	234891682	1	4	160	0	1	0	0	0	0	0	0	0	16717	1392	48	3		3	TRPM8	2	234891682	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1486654	234891682	8307691	238	134066											
COL6A3	1293	broad.mit.edu	37	chr2	238285757	238285757	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggttgagggctttgcccgTcttgatcttcattctcttca	9	11	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238285757	C	C	238285757	3	2	160	1	0	0	0	0	1	0	0	0	3733	1667	58	5	7004	5	COL6A3	2	238285757	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3394075	238285757	4913616	239	134067											
HDAC4	9759	broad.mit.edu	37	chr2	240085557	240085557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattccggtgggccagcgCcttctttttattgaggacaa	11	10	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240085557	A	A	240085557	3	1	160	1	0	0	0	0	1	0	0	0	7076	739	26	3	2789	3	HDAC4	2	240085557	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1799800	240085557	3113816	240	134068											
CAPN10	11132	broad.mit.edu	37	chr2	241533296	241533296	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccatggtgcccttcctgCctgtgcctgcgccattcctc	8	18	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241533296	T	T	241533296	1	4	160	0	1	0	0	0	0	0	0	0	2649	754	26	4		4	CAPN10	2	241533296	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1447739	241533296	1666077	241	134069											
ANO7	50636	broad.mit.edu	37	chr2	242128053	242128053	+	Frame_Shift_Del	DEL	G	-	-													atggctgccactgcctgggcGgggctccaagggccacccct							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	242128053	-	-	242128053	7	5	160	1	0	1	0	1	0	0	0	0	702	1103	39	0	29	0	ANO7	2	242128053	Frame_Shift_Del	DEL	G	TCGA-50-5933-01A-11D-1753-08	594757	242128053	1071320	242	134070											
CNTN4	152330	broad.mit.edu	37	chr3	2777972	2777973	+	Frame_Shift_Ins	INS	-	A	A													tccctttggattctgaggagINSaaaaaagtgaagctcaattg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2777973	A	A	2777972	7	5	160	1	0	1	1	0	0	0	0	0	3675	933	33	0	135	0	CNTN4	3	2777972	Frame_Shift_Ins	INS	-	TCGA-50-5933-01A-11D-1753-08		2777972	195244458	243	134071											
CNTN4	152330	broad.mit.edu	37	chr3	2924927	2924927	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggaatgctttgctttaGgaaagtaagttctggtttgc	12	5	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2924927	T	T	2924927	4	4	160	1	0	0	0	0	0	1	0	0	3675	1001	35	2	773	2	CNTN4	3	2924927	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	146955	2924927	195097503	244	134072											
ITPR1	3708	broad.mit.edu	37	chr3	4821203	4821203	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcccccaagcagcccctctAcatttcctctccctttgttt	5	18	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4821203	T	T	4821203	1	4	160	0	1	0	0	0	0	0	0	0	7990	406	14	5		5	ITPR1	3	4821203	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1896276	4821203	193201227	245	134073											
SETD5	55209	broad.mit.edu	37	chr3	9475768	9475768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacttccctgactccagCggacgtctagccctgcatca	8	16	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9475768	A	A	9475768	1	1	160	0	1	0	0	0	0	0	0	0	14247	783	27	3		3	SETD5	3	9475768	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4654565	9475768	188546662	246	134074											
IL17RE	132014	broad.mit.edu	37	chr3	9952837	9952838	+	Missense_Mutation	DNP	GC	AT	AT													gttttggagaaggtggacctGcacccccagctctgcttcaa							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	9952838	AT	AT	9952837	3	1	160	1	0	0	0	0	1	0	0	0	7713	1306	46	4	1043	4	IL17RE	3	9952837	Missense_Mutation	DNP	GC	TCGA-50-5933-01A-11D-1753-08	477069	9952837	188069593	247	134075											
TMEM40	55287	broad.mit.edu	37	chr3	12779900	12779900	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccacagctggcccagcCtgcttgatgagcctaggcta	11	14	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12779900	A	A	12779900	1	1	160	0	1	0	0	0	0	0	0	0	16286	696	24	2		2	TMEM40	3	12779900	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2827063	12779900	185242530	248	134076											
SH3BP5	9467	broad.mit.edu	37	chr3	15311335	15311335	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttggcggcacggagcaccTctgtggccctctggaagtcc	13	15	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15311335	A	A	15311335	3	1	160	1	0	0	0	0	1	0	0	0	14360	1551	54	5	1011	5	SH3BP5	3	15311335	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	2531435	15311335	182711095	249	134077											
NEK10	152110	broad.mit.edu	37	chr3	27256240	27256240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattcctgaggaataaacaTaatttctcttgtcctcccac	5	11	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27256240	A	A	27256240	1	1	160	0	1	0	0	0	0	0	0	0	10417	1421	49	5		5	NEK10	3	27256240	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	11944905	27256240	170766190	250	134078											
GADL1	339896	broad.mit.edu	37	chr3	30880603	30880603	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacaagaaacggtgctgcCccctgtaagaaggatccaca	10	12	0	3	rs148436135		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30880603	A	A	30880603	2	1	160	1	0	0	0	0	0	0	0	1	6245	610	22	2		2	GADL1	3	30880603	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	3624363	30880603	167141827	251	134079											
MLH1	4292	broad.mit.edu	37	chr3	37038135	37038135	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcaaaatccacaagtattCaagtgattgttaaagaggga	9	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37038135	G	G	37038135	3	3	160	1	0	0	0	0	1	0	0	0	9710	827	29	4	148	4	MLH1	3	37038135	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	6157532	37038135	160984295	252	134080											
OXSR1	9943	broad.mit.edu	37	chr3	38293721	38293721	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttccattttgattgtacgGagcatattcttaactaccat	6	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38293721	T	T	38293721	1	4	160	0	1	0	0	0	0	0	0	0	11430	1189	41	3		3	OXSR1	3	38293721	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1255586	38293721	159728709	253	134081											
SCN10A	6336	broad.mit.edu	37	chr3	38760296	38760296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcaccgtgggcttctggtCcaggtaatagtcttcaaagg	11	9	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38760296	A	A	38760296	3	1	160	1	0	0	0	0	1	0	0	0	14025	855	30	3	2373	3	SCN10A	3	38760296	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	466575	38760296	159262134	254	134082											
SCN11A	11280	broad.mit.edu	37	chr3	38936142	38936142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcatgcctgacgcccaggGtctttggtacagaggttagt	12	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38936142	T	T	38936142	3	4	160	1	0	0	0	0	1	0	0	0	14026	1261	44	3	2706	3	SCN11A	3	38936142	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	175846	38936142	159086288	255	134083											
RPL14	9045	broad.mit.edu	37	chr3	40503438	40503438	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataattttcagaggaacagAataatcaagaatgaagttaa	8	3	2	4	rs145518013		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40503438	G	G	40503438	2	3	160	1	0	0	0	0	0	0	0	1	13672	243	9	5		5	RPL14	3	40503438	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	1567296	40503438	157518992	256	134084											
USP4	7375	broad.mit.edu	37	chr3	49336075	49336075	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagtcacacggtactgcaaGacagagatggtcaaggtcac	11	10	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49336075	A	A	49336075	1	1	160	0	1	0	0	0	0	0	0	0	17198	957	33	4		4	USP4	3	49336075	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	8832637	49336075	148686355	257	134085											
MST1R	4486	broad.mit.edu	37	chr3	49928939	49928939	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gataccaatgagagccagcaCattcgggtggttcaggccac	12	11	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49928939	T	T	49928939	3	4	160	1	0	0	0	0	1	0	0	0	9985	478	17	4	795	4	MST1R	3	49928939	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	592864	49928939	148093491	258	134086											
NEK4	6787	broad.mit.edu	37	chr3	52802407	52802407	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taccacctgattctcaggcaGaagctgccctttctgctcct	7	15	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52802407	A	A	52802407	2	1	160	1	0	0	0	0	0	0	0	1	10421	933	33	4		4	NEK4	3	52802407	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2873468	52802407	145220023	259	134087											
CACNA1D	776	broad.mit.edu	37	chr3	53820830	53820830	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgattcgggagagctctGtctggtctctccgtttagat	12	9	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53820830	A	A	53820830	1	1	160	0	1	0	0	0	0	0	0	0	2567	1392	48	4		4	CACNA1D	3	53820830	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1018423	53820830	144201600	260	134088											
CACNA2D3	55799	broad.mit.edu	37	chr3	54913031	54913031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaactaacacacttttcTtttatcattttagttgagaa	5	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54913031	C	C	54913031	1	2	160	0	1	0	0	0	0	0	0	0	2576	1624	56	5		5	CACNA2D3	3	54913031	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1092201	54913031	143109399	261	134089											
DNASE1L3	1776	broad.mit.edu	37	chr3	58196464	58196464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggtgtgaggggtgtctGggatcctcctcccaggaaag	17	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58196464	T	T	58196464	1	4	160	0	1	0	0	0	0	0	0	0	4703	1363	47	2		2	DNASE1L3	3	58196464	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3283433	58196464	139825966	262	134090											
ACOX2	8309	broad.mit.edu	37	chr3	58491031	58491031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgtttgtagaaagaaaCgcattattaacacagtacat	6	8	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58491031	A	A	58491031	1	1	160	0	1	0	0	0	0	0	0	0	159	551	19	3		3	ACOX2	3	58491031	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	294567	58491031	139531399	263	134091											
CADPS	8618	broad.mit.edu	37	chr3	62501903	62501903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagaaggttcaagcaaatGtgtcactcatccatacttct	6	9	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62501903	T	T	62501903	1	4	160	0	1	0	0	0	0	0	0	0	2596	1392	48	3		3	CADPS	3	62501903	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	4010872	62501903	135520527	264	134092											
GXYLT2	727936	broad.mit.edu	37	chr3	72978385	72978385	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accaatctcatgaggagaggGaacatgccgagaaactgatg	12	8	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72978385	C	C	72978385	1	2	160	0	1	0	0	0	0	0	0	0	6969	1189	41	4		4	GXYLT2	3	72978385	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	10476482	72978385	125044045	265	134093											
CNTN3	5067	broad.mit.edu	37	chr3	74414570	74414570	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgatatttttcctcctgTaccactgcttagaagtaaag	6	8	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74414570	C	C	74414570	1	2	160	0	1	0	0	0	0	0	0	0	3674	1653	57	5		5	CNTN3	3	74414570	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1436185	74414570	123607860	266	134094											
CNTN3	5067	broad.mit.edu	37	chr3	74414951	74414951	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacctggattaatagaaatgGacatgataatgagtaacaga	9	4	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74414951	C	C	74414951	1	2	160	0	1	0	0	0	0	0	0	0	3674	1189	41	4		4	CNTN3	3	74414951	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	381	74414951	123607479	267	134095											
EPHA3	2042	broad.mit.edu	37	chr3	89390204	89390204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggcagacaaagaccctcCatccatggcttgtacccgtg	10	15	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89390204	A	A	89390204	3	1	160	1	0	0	0	0	1	0	0	0	5210	594	21	2	967	2	EPHA3	3	89390204	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	14975253	89390204	108632226	268	134096											
EPHA3	2042	broad.mit.edu	37	chr3	89391113	89391113	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggactcaccaacaccacGgtgacagtgacagaccttct	8	13	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89391113	T	T	89391113	2	4	160	1	0	0	0	0	0	0	0	1	5210	1103	39	1		1	EPHA3	3	89391113	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	909	89391113	108631317	269	134097											
CPOX	1371	broad.mit.edu	37	chr3	98299562	98299563	+	Nonsense_Mutation	DNP	CC	AA	AA													ccttggatggcgtagaacttCcagaatttcagcttctttgg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	98299563	AA	AA	98299562	4	1	160	1	0	0	0	0	0	1	0	0	3853	864	30	3	38	3	CPOX	3	98299562	Nonsense_Mutation	DNP	CC	TCGA-50-5933-01A-11D-1753-08	8908449	98299562	99722868	270	134098											
ZBTB11	27107	broad.mit.edu	37	chr3	101371321	101371321	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattctataaggatacataTaatataaagtatagttacct	4	4	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101371321	C	C	101371321	1	2	160	0	1	0	0	0	0	0	0	0	17650	1421	49	5		5	ZBTB11	3	101371321	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	3071759	101371321	96651109	271	134099											
CD200R1	131450	broad.mit.edu	37	chr3	112666767	112666767	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggttgagcagcaccctcCgcttctgaattttgaaaaag	9	9	1	3	rs145811094		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112666767	T	T	112666767	1	4	160	0	1	0	0	0	0	0	0	0	3011	639	23	4		4	CD200R1	3	112666767	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	11295446	112666767	85355663	272	134100											
BOC	91653	broad.mit.edu	37	chr3	112991863	112991863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccctcccagcccatctgGccctgggacagaaagacaca	8	17	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112991863	T	T	112991863	1	4	160	0	1	0	0	0	0	0	0	0	1487	1218	42	3		3	BOC	3	112991863	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	325096	112991863	85030567	273	134101											
POLQ	10721	broad.mit.edu	37	chr3	121208671	121208671	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagatcgaaaacttctgCtcatcttttctgaattgaaa	5	9	4	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121208671	T	T	121208671	3	4	160	1	0	0	0	0	1	0	0	0	12303	797	28	4	4725	4	POLQ	3	121208671	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	8216808	121208671	76813759	274	134102											
GOLGB1	2804	broad.mit.edu	37	chr3	121411320	121411320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggcgtgtctcttctagCtgggacaaaagttctttgtt	12	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121411320	A	A	121411320	3	1	160	1	0	0	0	0	1	0	0	0	6629	796	28	3	2939	3	GOLGB1	3	121411320	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	202649	121411320	76611110	275	134103											
CASR	846	broad.mit.edu	37	chr3	121980463	121980463	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaatgatgagcaccaggCcactgccatggcagacatca	9	15	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121980463	T	T	121980463	3	4	160	1	0	0	0	0	1	0	0	0	2708	739	26	4	591	4	CASR	3	121980463	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	569143	121980463	76041967	276	134104											
CASR	846	broad.mit.edu	37	chr3	122003473	122003473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgggccacgctgcgccGcagcaacgtctcccgcaagc	12	19	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122003473	T	T	122003473	3	4	160	1	0	0	0	0	1	0	0	0	2708	1087	38	3	2724	3	CASR	3	122003473	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	23010	122003473	76018957	277	134105											
PARP14	54625	broad.mit.edu	37	chr3	122432421	122432421	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattcaatctcaaagcagGtacttgtacaattttgatga	6	8	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122432421	T	T	122432421	5	4	160	1	0	0	0	0	0	0	1	0	11552	1275	44	3	3808	3	PARP14	3	122432421	Splice_Site	SNP	G	TCGA-50-5933-01A-11D-1753-08	428948	122432421	75590009	278	134106											
KALRN	8997	broad.mit.edu	37	chr3	124066000	124066000	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgaccaggtgttggactGgattgaaaaccatggtgagg	14	6	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124066000	A	A	124066000	4	1	160	1	0	0	0	0	0	1	0	0	8045	1357	47	4	1690	4	KALRN	3	124066000	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1633579	124066000	73956430	279	134107											
KALRN	8997	broad.mit.edu	37	chr3	124398428	124398428	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttgatgtgttctgtaacAgtgaccttgctaaaatgacc	8	7	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124398428	T	T	124398428	1	4	160	0	1	0	0	0	0	0	0	0	8045	203	7	5		5	KALRN	3	124398428	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	332428	124398428	73624002	280	134108											
ACPP	55	broad.mit.edu	37	chr3	132063770	132063770	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcctttttctttgctacaGagtgttcacaatttcacttt	4	10	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132063770	C	C	132063770	5	2	160	1	0	0	0	0	0	0	1	0	167	956	33	4	674	4	ACPP	3	132063770	Splice_Site	SNP	G	TCGA-50-5933-01A-11D-1753-08	7665342	132063770	65958660	281	134109											
TMEM108	66000	broad.mit.edu	37	chr3	133100012	133100012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctcctcctgctgtaagtGccgccctctcccacccatcc	5	21	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133100012	T	T	133100012	1	4	160	0	1	0	0	0	0	0	0	0	16147	1334	46	3		3	TMEM108	3	133100012	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1036242	133100012	64922418	282	134110											
COPB2	9276	broad.mit.edu	37	chr3	139096978	139096978	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgggtgtgtccttcaaacaCttgtgagcaagaccattttt	9	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139096978	G	G	139096978	3	3	160	1	0	0	0	0	1	0	0	0	3761	565	20	4	2383	4	COPB2	3	139096978	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	5996966	139096978	58925452	283	134111											
TRIM42	287015	broad.mit.edu	37	chr3	140406835	140406835	+	Silent	SNP	T	C	C													aaggaagccctgaaggagacTggccaggtggcattcctgca							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140406835	C	C	140406835	2	2	160	1	0	0	0	0	0	0	0	1	16641	1567	55	5		5	TRIM42	3	140406835	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	1309857	140406835	57615595	284	134112	574	2									
TRIM42	287015	broad.mit.edu	37	chr3	140406842	140406842	+	Missense_Mutation	SNP	G	T	T													ccctgaaggagactggccagGtggcattcctgcagtcagcc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140406842	T	T	140406842	3	4	160	1	0	0	0	0	1	0	0	0	16641	1261	44	3	1328	3	TRIM42	3	140406842	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	7	140406842	57615588	285	134113	574	2									
CPB1	1360	broad.mit.edu	37	chr3	148559787	148559787	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattccttaaaacctagagaGaataataacacagaaaaaaa	4	6	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148559787	T	T	148559787	1	4	160	0	1	0	0	0	0	0	0	0	3828	957	33	3		3	CPB1	3	148559787	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	8152945	148559787	49462643	286	134114											
P2RY12	64805	broad.mit.edu	37	chr3	151055929	151055929	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgataatgaaaactttgacGttcacctttttcctggggac	8	8	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151055929	A	A	151055929	2	1	160	1	0	0	0	0	0	0	0	1	11443	1136	40	4		4	P2RY12	3	151055929	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2496142	151055929	46966501	287	134115											
MED12L	116931	broad.mit.edu	37	chr3	151102898	151102898	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgaaacagacatgtgatgtCatcacttgtgaacctatggg	10	9	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151102898	T	T	151102898	2	4	160	1	0	0	0	0	0	0	0	1	9522	813	29	4		4	MED12L	3	151102898	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	46969	151102898	46919532	288	134116											
GPR149	344758	broad.mit.edu	37	chr3	154055989	154055989	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagaaagagatagggttttCcctgtaggtgcatggagaga	15	4	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154055989	T	T	154055989	2	4	160	1	0	0	0	0	0	0	0	1	6719	842	30	4		4	GPR149	3	154055989	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2953091	154055989	43966441	289	134117											
SI	6476	broad.mit.edu	37	chr3	164760753	164760753	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgaattatgctacaatctTtcagaccatatactctatag	4	8	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164760753	A	A	164760753	1	1	160	0	1	0	0	0	0	0	0	0	14410	1856	64	5		5	SI	3	164760753	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	10704764	164760753	33261677	290	134118											
ECE2	9718	broad.mit.edu	37	chr3	183994878	183994878	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctggaggcctaagggcctCtaagattttcacttgtggga	12	8	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183994878	G	G	183994878	1	3	160	0	1	0	0	0	0	0	0	0	4930	928	32	4		4	ECE2	3	183994878	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	19234125	183994878	14027552	291	134119											
TRA2B	6434	broad.mit.edu	37	chr3	185655540	185655540	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgcccctgcctcctggcccGaggccgacgggcctagaaaa	12	17	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185655540	A	A	185655540	1	1	160	0	1	0	0	0	0	0	0	0	16558	1073	37	4		4	TRA2B	3	185655540	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1660662	185655540	12366890	292	134120											
EIF4A2	1974	broad.mit.edu	37	chr3	186504993	186504993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatttttctcaatacgagGcgcaaggtggactggctgac	12	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186504993	T	T	186504993	3	4	160	1	0	0	0	0	1	0	0	0	5067	1194	42	3	879	3	EIF4A2	3	186504993	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	849453	186504993	11517437	293	134121											
CRIPAK	285464	broad.mit.edu	37	chr4	1389358	1389358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgtggagtgcccgcctGctcacacgtgcccatgtgga	12	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1389358	T	T	1389358	2	4	160	1	0	0	0	0	0	0	0	1	3909	1306	46	3		3	CRIPAK	4	1389358	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08		1389358	189764918	294	134122											
HAUS3	79441	broad.mit.edu	37	chr4	2240765	2240765	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatccaaattttctttgtcCacagcctatacaaagaaaag	5	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2240765	A	A	2240765	2	1	160	1	0	0	0	0	0	0	0	1	7033	581	21	2		2	HAUS3	4	2240765	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	851407	2240765	188913511	295	134123											
S100P	6286	broad.mit.edu	37	chr4	6695620	6695620	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgggacattttctcggcccTgccagcccccaggaggaagg	14	13	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6695620	A	A	6695620	1	1	160	0	1	0	0	0	0	0	0	0	13901	1595	55	5		5	S100P	4	6695620	5'UTR	SNP	T	TCGA-50-5933-01A-11D-1753-08	4454855	6695620	184458656	296	134124											
CPEB2	132864	broad.mit.edu	37	chr4	15063617	15063617	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaatgataatatactattGacttttacgttttacaaaaa	3	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15063617	A	A	15063617	1	1	160	0	1	0	0	0	0	0	0	0	3833	1305	45	4		4	CPEB2	4	15063617	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	8367997	15063617	176090659	297	134125											
LDB2	9079	broad.mit.edu	37	chr4	16513545	16513545	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctttttcacatcacttcAtccctggaagacacctctga	4	14	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16513545	G	G	16513545	1	3	160	0	1	0	0	0	0	0	0	0	8768	232	8	5		5	LDB2	4	16513545	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1449928	16513545	174640731	298	134126											
NCAPG	64151	broad.mit.edu	37	chr4	17814136	17814136	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgtatgtttttgacaatGaaatatctagtgattgaaaa	8	2	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17814136	A	A	17814136	1	1	160	0	1	0	0	0	0	0	0	0	10302	1305	45	4		4	NCAPG	4	17814136	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1300591	17814136	173340140	299	134127											
SLIT2	9353	broad.mit.edu	37	chr4	20619120	20619120	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctacagctgtaagtgcttgGagggccatggaggtgtcctc	14	10	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20619120	A	A	20619120	3	1	160	1	0	0	0	0	1	0	0	0	14854	1175	41	4	4337	4	SLIT2	4	20619120	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2804984	20619120	170535156	300	134128											
PPARGC1A	10891	broad.mit.edu	37	chr4	23816048	23816048	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgagttgtgcatacaacTcggattgctccggccctttc	10	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23816048	A	A	23816048	3	1	160	1	0	0	0	0	1	0	0	0	12396	1551	54	5	1362	5	PPARGC1A	4	23816048	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3196928	23816048	167338228	301	134129											
SEL1L3	23231	broad.mit.edu	37	chr4	25823605	25823605	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtaccgcaatcttcctgatCccctggactcacctgggcgg	10	15	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25823605	A	A	25823605	1	1	160	0	1	0	0	0	0	0	0	0	14125	870	30	3		3	SEL1L3	4	25823605	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2007557	25823605	165330671	302	134130											
STIM2	57620	broad.mit.edu	37	chr4	27019384	27019384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagcagcagcctgtgccGttcacgccgcagcattgtgc	12	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27019384	T	T	27019384	3	4	160	1	0	0	0	0	1	0	0	0	15402	1145	40	3	1611	3	STIM2	4	27019384	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1195779	27019384	164134892	303	134131											
ARAP2	116984	broad.mit.edu	37	chr4	36126541	36126541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgacccctggaagagaaCgtataaatgctccatatttt	9	8	0	2	rs139641204		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36126541	A	A	36126541	3	1	160	1	0	0	0	0	1	0	0	0	841	536	19	3	1473	3	ARAP2	4	36126541	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	9107157	36126541	155027735	304	134132											
TLR10	81793	broad.mit.edu	37	chr4	38777210	38777210	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtttctgatgagtctcAttgtatttccaaggatttta	7	5	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38777210	G	G	38777210	3	3	160	1	0	0	0	0	1	0	0	0	16073	217	8	5	2437	5	TLR10	4	38777210	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	2650669	38777210	152377066	305	134133											
GNPDA2	132789	broad.mit.edu	37	chr4	44719088	44719088	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatttaaaaatccctaattCaaacactaacaaacagttaa	1	8	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44719088	G	G	44719088	1	3	160	0	1	0	0	0	0	0	0	0	6607	841	29	4		4	GNPDA2	4	44719088	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5941878	44719088	146435188	306	134134											
TXK	7294	broad.mit.edu	37	chr4	48112639	48112640	+	Intron	INS	-	A	A													cctacaacaaaagaaaaagcINSaaaaatcaaaatgcttggca							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48112640	A	A	48112639	6	5	160	0	1	1	1	0	0	0	0	0	16912	725	25	0		0	TXK	4	48112639	Intron	INS	-	TCGA-50-5933-01A-11D-1753-08	3393551	48112639	143041637	307	134135											
FRYL	285527	broad.mit.edu	37	chr4	48512111	48512111	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcttttcacattgtatgtatCcaggtgttcttgcaactcca	6	10	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48512111	T	T	48512111	3	4	160	1	0	0	0	0	1	0	0	0	6124	855	30	4	706	4	FRYL	4	48512111	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	399472	48512111	142642165	308	134136											
DCUN1D4	23142	broad.mit.edu	37	chr4	52752827	52752827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcaaacttactgagttgGgtgaatcagttggttgtttt	12	4	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52752827	T	T	52752827	1	4	160	0	1	0	0	0	0	0	0	0	4349	1247	43	2		2	DCUN1D4	4	52752827	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	4240716	52752827	138401449	309	134137											
PDGFRA	5156	broad.mit.edu	37	chr4	55155069	55155069	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgctaccagtgaagtgtgAgctccttccccatcccgggg	11	15	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55155069	T	T	55155069	1	4	160	0	1	0	0	0	0	0	0	0	11755	319	11	5		5	PDGFRA	4	55155069	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2402242	55155069	135999207	310	134138											
LPHN3	23284	broad.mit.edu	37	chr4	62845511	62845511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagcaacctacattgataCcagtgaagaatttttccact	6	9	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62845511	A	A	62845511	1	1	160	0	1	0	0	0	0	0	0	0	9004	522	18	3		3	LPHN3	4	62845511	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	7690442	62845511	128308765	311	134139											
LPHN3	23284	broad.mit.edu	37	chr4	62862036	62862036	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccgacttgacacctacttCatttggagttttataggacc	7	11	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62862036	T	T	62862036	2	4	160	1	0	0	0	0	0	0	0	1	9004	825	29	4		4	LPHN3	4	62862036	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	16525	62862036	128292240	312	134140											
LPHN3	23284	broad.mit.edu	37	chr4	62894601	62894601	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataacagacccttcatcaagTaagaatgacctgaatggctg	8	9	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62894601	A	A	62894601	5	1	160	1	0	0	0	0	0	0	1	0	9004	1652	57	5	3294	5	LPHN3	4	62894601	Splice_Site	SNP	T	TCGA-50-5933-01A-11D-1753-08	32565	62894601	128259675	313	134141											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68688290	68688290	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaggagtttatttctatgGcagtcgaggaaggagtcaca	12	5	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68688290	C	C	68688290	1	2	160	0	1	0	0	0	0	0	0	0	16364	1218	42	4		4	TMPRSS11D	4	68688290	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	5793689	68688290	122465986	314	134142											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68929046	68929046	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaagtatttcttatttctCattaaaacattcagttaatc	2	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68929046	T	T	68929046	1	4	160	0	1	0	0	0	0	0	0	0	16366	841	29	4		4	TMPRSS11F	4	68929046	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	240756	68929046	122225230	315	134143											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68934315	68934315	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgtgaaaagaaggctcaCagcagccttggttaacttac	10	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68934315	G	G	68934315	1	3	160	0	1	0	0	0	0	0	0	0	16366	493	17	4		4	TMPRSS11F	4	68934315	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5269	68934315	122219961	316	134144											
UGT2A3	79799	broad.mit.edu	37	chr4	69795752	69795752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagactgctcgatctaGgggctttacaggttgatcat	11	9	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69795752	T	T	69795752	3	4	160	1	0	0	0	0	1	0	0	0	17081	991	35	2	224	2	UGT2A3	4	69795752	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	861437	69795752	121358524	317	134145											
UGT2A3	79799	broad.mit.edu	37	chr4	69817245	69817245	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttctgtcctgtggcatAtggaccacctcaaatttcaa	7	11	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69817245	G	G	69817245	2	3	160	1	0	0	0	0	0	0	0	1	17081	446	16	5		5	UGT2A3	4	69817245	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	21493	69817245	121337031	318	134146											
UGT2B28	54490	broad.mit.edu	37	chr4	70152549	70152549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagtgataagtaacatgaCagcagaaagggccaacgtaa	11	7	1	3	rs144043239		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70152549	A	A	70152549	3	1	160	1	0	0	0	0	1	0	0	0	17086	478	17	3	960	3	UGT2B28	4	70152549	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	335304	70152549	121001727	319	134147											
CSN1S1	1446	broad.mit.edu	37	chr4	70810648	70810648	+	Frame_Shift_Del	DEL	C	-	-													atcatgcagtatgttcctttCccaccgttttccgacatctc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70810648	-	-	70810648	7	5	160	1	0	1	0	1	0	0	0	0	3981	854	30	0	537	0	CSN1S1	4	70810648	Frame_Shift_Del	DEL	C	TCGA-50-5933-01A-11D-1753-08	658099	70810648	120343628	320	134148											
PROL1	58503	broad.mit.edu	37	chr4	71275358	71275358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttccgggttatccaaacCtacatttcccactaagacct	4	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71275358	A	A	71275358	3	1	160	1	0	0	0	0	1	0	0	0	12660	680	24	2	319	2	PROL1	4	71275358	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	464710	71275358	119878918	321	134149											
ANKRD17	26057	broad.mit.edu	37	chr4	73984548	73984548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgttccccttcttgttacGtacatcaatatgagctcccc	6	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73984548	A	A	73984548	3	1	160	1	0	0	0	0	1	0	0	0	646	1145	40	4	3818	4	ANKRD17	4	73984548	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2709190	73984548	117169728	322	134150											
AFM	173	broad.mit.edu	37	chr4	74364807	74364807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatctgctttcattcagaaCcaaacagacaaatgttcttt	5	9	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74364807	A	A	74364807	1	1	160	0	1	0	0	0	0	0	0	0	361	522	18	3		3	AFM	4	74364807	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	380259	74364807	116789469	323	134151											
ART3	419	broad.mit.edu	37	chr4	76956352	76956352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaccattgtcatcttcaGcaagttcattacttacatca	4	12	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76956352	T	T	76956352	1	4	160	0	1	0	0	0	0	0	0	0	1002	986	34	3		3	ART3	4	76956352	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2591545	76956352	114197924	324	134152											
STBD1	8987	broad.mit.edu	37	chr4	77231140	77231140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagtggttcacgcatggtGggggattcactgattcagtt	13	6	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77231140	T	T	77231140	3	4	160	1	0	0	0	0	1	0	0	0	15392	1357	47	2	1070	2	STBD1	4	77231140	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	274788	77231140	113923136	325	134153											
SEPT11	55752	broad.mit.edu	37	chr4	77926987	77926987	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggggacatgaatggatgaGgagatagcaggatccatccc	16	7	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77926987	A	A	77926987	1	1	160	0	1	0	0	0	0	0	0	0	14174	1015	35	4		4	SEPT11	4	77926987	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	695847	77926987	113227289	326	134154											
HELQ	113510	broad.mit.edu	37	chr4	84374799	84374799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattttcaaagtatatagcCtgtgaggaaggtacatcata	8	5	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84374799	A	A	84374799	3	1	160	1	0	0	0	0	1	0	0	0	7114	680	24	2	2776	2	HELQ	4	84374799	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	6447812	84374799	106779477	327	134155											
PTPN13	5783	broad.mit.edu	37	chr4	87689140	87689140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcactgaaggtcaggccttGggagactacaatctcacctt	10	11	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87689140	T	T	87689140	1	4	160	0	1	0	0	0	0	0	0	0	12888	1363	47	2		2	PTPN13	4	87689140	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3314341	87689140	103465136	328	134156											
ABCG2	9429	broad.mit.edu	37	chr4	89018658	89018658	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctacagaaaccacacTctgacctgctgctatggcca	8	13	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89018658	A	A	89018658	3	1	160	1	0	0	0	0	1	0	0	0	69	1551	54	5	389	5	ABCG2	4	89018658	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	1329518	89018658	102135618	329	134157											
MMRN1	22915	broad.mit.edu	37	chr4	90848858	90848858	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccagcttacagaagaaaGggttttagtttttctccatt	8	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90848858	A	A	90848858	1	1	160	0	1	0	0	0	0	0	0	0	9764	1015	35	4		4	MMRN1	4	90848858	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1830200	90848858	100305418	330	134158											
ADH6	130	broad.mit.edu	37	chr4	100131611	100131611	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccctcagaattcaggcaaGaggtacattctccacactgt	8	12	3	2	rs148378840	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100131611	T	T	100131611	3	4	160	1	0	0	0	0	1	0	0	0	312	942	33	3	844	3	ADH6	4	100131611	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	9282753	100131611	91022665	331	134159											
AGXT2L1	64850	broad.mit.edu	37	chr4	109664984	109664984	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcagaggtcacactttcGgttttggttcccatagcttc	8	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109664984	T	T	109664984	2	4	160	1	0	0	0	0	0	0	0	1	406	1103	39	1		1	AGXT2L1	4	109664984	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	9533373	109664984	81489292	332	134160											
COL25A1	84570	broad.mit.edu	37	chr4	109738529	109738529	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagggagagtgcttcttttGagaaattattcagtaaagcc	10	5	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109738529	T	T	109738529	1	4	160	0	1	0	0	0	0	0	0	0	3716	1305	45	3		3	COL25A1	4	109738529	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	73545	109738529	81415747	333	134161											
PITX2	5308	broad.mit.edu	37	chr4	111554084	111554084	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggcctcccgtccgatgacCcgggcaggagaagggggttc	17	13	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111554084	G	G	111554084	1	3	160	0	1	0	0	0	0	0	0	0	12050	638	22	4		4	PITX2	4	111554084	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1815555	111554084	79600192	334	134162											
NEUROG2	63973	broad.mit.edu	37	chr4	113436287	113436287	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgctcgcggttgttggccttCagtctacgggtcttcttgat	12	11	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113436287	A	A	113436287	2	1	160	1	0	0	0	0	0	0	0	1	10448	813	29	3		3	NEUROG2	4	113436287	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	1882203	113436287	77717989	335	134163											
ANK2	287	broad.mit.edu	37	chr4	114274074	114274074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatctaccattcccagccCattttgttgcccctcccacc	5	18	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114274074	A	A	114274074	1	1	160	0	1	0	0	0	0	0	0	0	621	609	21	2		2	ANK2	4	114274074	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	837787	114274074	76880202	336	134164											
ANK2	287	broad.mit.edu	37	chr4	114275674	114275674	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctgtgtcaccttctgGcaaaacagaaaagcaaccac	7	14	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114275674	C	C	114275674	3	2	160	1	0	0	0	0	1	0	0	0	621	1203	42	4	6115	4	ANK2	4	114275674	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1600	114275674	76878602	337	134165											
NDST3	9348	broad.mit.edu	37	chr4	119145679	119145679	+	Frame_Shift_Del	DEL	G	-	-													tgacccatttgtccaactatGggaatgaccgactgggatta							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119145679	-	-	119145679	7	5	160	1	0	1	0	1	0	0	0	0	10352	1348	47	0	1595	0	NDST3	4	119145679	Frame_Shift_Del	DEL	G	TCGA-50-5933-01A-11D-1753-08	4870005	119145679	72008597	338	134166											
TMEM155	132332	broad.mit.edu	37	chr4	122682991	122682991	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattgcacttacaagtttGgaaattagtgcaacagccaa	7	9	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122682991	T	T	122682991	2	4	160	1	0	0	0	0	0	0	0	1	16195	1335	47	2		2	TMEM155	4	122682991	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	3537312	122682991	68471285	339	134167											
PGRMC2	10424	broad.mit.edu	37	chr4	129192459	129192460	+	3'UTR	DNP	TG	AA	AA													tgaaggcccctgactttggtTgtttacaaagttcaatcctg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	129192460	AA	AA	129192459	1	1	160	0	1	0	0	0	0	0	0	0	11902	1827	63	5		5	PGRMC2	4	129192459	3'UTR	DNP	TG	TCGA-50-5933-01A-11D-1753-08	6509468	129192459	61961817	340	134168											
PCDH18	54510	broad.mit.edu	37	chr4	138451195	138451195	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtcattgctgtacttgtcAccgactctgcatattcaaag	7	10	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138451195	T	T	138451195	3	4	160	1	0	0	0	0	1	0	0	0	11607	159	6	5	1375	5	PCDH18	4	138451195	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	9258736	138451195	52703081	341	134169											
MGST2	4258	broad.mit.edu	37	chr4	140624700	140624700	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctaaaaaacggtaaggagaAcccagtaattttgtatttat	8	5	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140624700	G	G	140624700	1	3	160	0	1	0	0	0	0	0	0	0	9654	58	2	5		5	MGST2	4	140624700	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2173505	140624700	50529576	342	134170											
INPP4B	8821	broad.mit.edu	37	chr4	143081565	143081565	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggagtcctgccctctcatCactgggggttggtcttgggg	15	10	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143081565	T	T	143081565	2	4	160	1	0	0	0	0	0	0	0	1	7823	813	29	4		4	INPP4B	4	143081565	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2456865	143081565	48072711	343	134171											
GYPA	2993	broad.mit.edu	37	chr4	145040800	145040800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatagagttcaatcacaaCaatgactccagagcaactat	5	9	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145040800	A	A	145040800	1	1	160	0	1	0	0	0	0	0	0	0	6973	493	17	3		3	GYPA	4	145040800	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1959235	145040800	46113476	344	134172											
FBXW7	55294	broad.mit.edu	37	chr4	153253847	153253847	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcaggtctttgggttccaGgaatgaaagcacatagagtg	13	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153253847	A	A	153253847	2	1	160	1	0	0	0	0	0	0	0	1	5826	991	35	4		4	FBXW7	4	153253847	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	8213047	153253847	37900429	345	134173											
GRIA2	2891	broad.mit.edu	37	chr4	158142240	158142240	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctttctcctgttttaTggggactgatttttggtgtc	9	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158142240	A	A	158142240	3	1	160	1	0	0	0	0	1	0	0	0	6834	1464	51	5	48	5	GRIA2	4	158142240	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	4888393	158142240	33012036	346	134174											
NPY5R	4889	broad.mit.edu	37	chr4	164271912	164271912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctactttctgatagctactGtctggacactaggttttgcc	9	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164271912	T	T	164271912	3	4	160	1	0	0	0	0	1	0	0	0	10705	1377	48	3	489	3	NPY5R	4	164271912	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	6129672	164271912	26882364	347	134175											
TKTL2	84076	broad.mit.edu	37	chr4	164394505	164394505	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatgcagtacctaatccctGacctagggaccctgttgcca	8	14	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164394505	C	C	164394505	3	2	160	1	0	0	0	0	1	0	0	0	16059	1299	45	4	1502	4	TKTL2	4	164394505	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	122593	164394505	26759771	348	134176											
MARCH1	55016	broad.mit.edu	37	chr4	164854263	164854263	+	Intron	SNP	G	A	A													ctaaaacggcttttgatgagGccattgcagaacttgataca							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164854263	A	A	164854263	1	1	160	0	1	0	0	0	0	0	0	0	9390	1218	42	4		4	MARCH1	4	164854263	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	459758	164854263	26300013	349	134177	575	2									
MARCH1	55016	broad.mit.edu	37	chr4	164854265	164854265	+	Intron	SNP	C	A	A													aaaacggcttttgatgaggcCattgcagaacttgatacact							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164854265	A	A	164854265	1	1	160	0	1	0	0	0	0	0	0	0	9390	609	21	2		2	MARCH1	4	164854265	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2	164854265	26300011	350	134178	575	2									
ANP32C	23520	broad.mit.edu	37	chr4	165118545	165118545	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcttgaggttttctaactGtttcagtggctctattgtgc	10	8	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118545	A	A	165118545	4	1	160	1	0	0	0	0	0	1	0	0	707	1386	48	4	388	4	ANP32C	4	165118545	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	264280	165118545	26035731	351	134179											
TLL1	7092	broad.mit.edu	37	chr4	166964396	166964396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatagcatgtccaggcttaGttatttgtttattttttggc	8	5	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166964396	T	T	166964396	1	4	160	0	1	0	0	0	0	0	0	0	16068	1044	36	3		3	TLL1	4	166964396	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1845851	166964396	24189880	352	134180											
TLL1	7092	broad.mit.edu	37	chr4	167021825	167021825	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagtattcccaaacatgcGttacactgaagaaaaagtga	7	8	0	3	rs113057991		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167021825	A	A	167021825	1	1	160	0	1	0	0	0	0	0	0	0	16068	1160	40	4		4	TLL1	4	167021825	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	57429	167021825	24132451	353	134181											
MORF4	10934	broad.mit.edu	37	chr4	174537899	174537899	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctctccggaacccactcatCccaatttttattccaaccac	3	17	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174537899	T	T	174537899	1	4	160	0	1	0	0	0	0	0	0	0	9799	870	30	4		4	MORF4	4	174537899	5'Flank	SNP	C	TCGA-50-5933-01A-11D-1753-08	7516074	174537899	16616377	354	134182											
ODZ3	55714	broad.mit.edu	37	chr4	183522218	183522218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaccagagtccggcccCgccggctgctttgcccgccg	13	17	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183522218	A	A	183522218	3	1	160	1	0	0	0	0	1	0	0	0	10931	652	23	1	663	1	ODZ3	4	183522218	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	8984319	183522218	7632058	355	134183											
WWC2	80014	broad.mit.edu	37	chr4	184210854	184210854	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaagcgtgccatgtagaAggtacccaacttacacttct	7	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184210854	T	T	184210854	1	4	160	0	1	0	0	0	0	0	0	0	17539	87	3	5		5	WWC2	4	184210854	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	688636	184210854	6943422	356	134184											
F11	2160	broad.mit.edu	37	chr4	187209002	187209002	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagtgttcttagccaatgGaatatatgcaaattggaatg	10	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187209002	A	A	187209002	1	1	160	0	1	0	0	0	0	0	0	0	5380	1189	41	4		4	F11	4	187209002	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2998148	187209002	3945274	357	134185											
FAT1	2195	broad.mit.edu	37	chr4	187558005	187558005	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgttgtcattttcatcaaGgattttcacaatgactcttg	6	7	5	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187558005	A	A	187558005	3	1	160	1	0	0	0	0	1	0	0	0	5746	1000	35	4	10152	4	FAT1	4	187558005	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	349003	187558005	3596271	358	134186											
TRIML2	205860	broad.mit.edu	37	chr4	189026059	189026059	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcaagtttctccctcgAtgtgttcaatatttcctgga	7	10	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189026059	C	C	189026059	3	2	160	1	0	0	0	0	1	0	0	0	16676	333	12	5	1120	5	TRIML2	4	189026059	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	1468054	189026059	2128217	359	134187											
SLC6A3	6531	broad.mit.edu	37	chr5	1414769	1414769	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagctcggcgctggtgctAcacggagcaggcccaggtgc	17	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1414769	T	T	1414769	1	4	160	0	1	0	0	0	0	0	0	0	14799	406	14	5		5	SLC6A3	5	1414769	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08		1414769	179500491	360	134188											
C5orf38	153571	broad.mit.edu	37	chr5	2753496	2753496	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtccaggcacgttacccCtcccgccaggagctcccgag	12	18	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2753496	T	T	2753496	1	4	160	0	1	0	0	0	0	0	0	0	2319	696	24	4		4	C5orf38	5	2753496	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1338727	2753496	178161764	361	134189											
ADCY2	108	broad.mit.edu	37	chr5	7773210	7773210	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actacagccaggtcttatttGagaggtgagccacggcctct	11	11	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7773210	A	A	7773210	3	1	160	1	0	0	0	0	1	0	0	0	294	1291	45	4	2450	4	ADCY2	5	7773210	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5019714	7773210	173142050	362	134190											
ADCY2	108	broad.mit.edu	37	chr5	7789657	7789657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgggggttcttttttcGgtttcattttgttctttttg	10	4	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7789657	T	T	7789657	1	4	160	0	1	0	0	0	0	0	0	0	294	1131	39	1		1	ADCY2	5	7789657	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	16447	7789657	173125603	363	134191											
FAM173B	134145	broad.mit.edu	37	chr5	10239183	10239183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttagcagaactcacaatgCgtccgtccccactaccgatg	7	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10239183	A	A	10239183	3	1	160	1	0	0	0	0	1	0	0	0	5539	768	27	3	415	3	FAM173B	5	10239183	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2449526	10239183	170676077	364	134192											
CTNND2	1501	broad.mit.edu	37	chr5	11411693	11411693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagtattcctgattcctGtagtgacctaatacaggagt	9	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11411693	T	T	11411693	3	4	160	1	0	0	0	0	1	0	0	0	4054	1386	48	3	3355	3	CTNND2	5	11411693	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1172510	11411693	169503567	365	134193											
FBXL7	23194	broad.mit.edu	37	chr5	15928432	15928432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccccaacgtgtgtctcatGctggaaaccgtaactgtcag	9	13	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928432	T	T	15928432	3	4	160	1	0	0	0	0	1	0	0	0	5781	1319	46	3	571	3	FBXL7	5	15928432	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4516739	15928432	164986828	366	134194											
CDH18	1016	broad.mit.edu	37	chr5	19520818	19520818	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcatattccctggcaagtTcgggtggattgtcattgaca	10	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19520818	G	G	19520818	3	3	160	1	0	0	0	0	1	0	0	0	3133	1783	62	5	928	5	CDH18	5	19520818	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3592386	19520818	161394442	367	134195											
CDH12	1010	broad.mit.edu	37	chr5	21883275	21883275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctgatgcaatgaaaaaGgttggaagaaagggtgtcat	12	4	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21883275	T	T	21883275	1	4	160	0	1	0	0	0	0	0	0	0	3128	1015	35	2		2	CDH12	5	21883275	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2362457	21883275	159031985	368	134196											
CDH12	1010	broad.mit.edu	37	chr5	21883649	21883649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccaacttaaagatatggCtattgctactggtggtgcag	11	7	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883649	A	A	21883649	1	1	160	0	1	0	0	0	0	0	0	0	3128	812	28	3		3	CDH12	5	21883649	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	374	21883649	159031611	369	134197											
PRDM9	56979	broad.mit.edu	37	chr5	23526942	23526942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggagaagccctatgtctGcagggagtgtgggcggggct	20	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23526942	T	T	23526942	3	4	160	1	0	0	0	0	1	0	0	0	12569	1319	46	3	1783	3	PRDM9	5	23526942	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1643293	23526942	157388318	370	134198											
PDZD2	23037	broad.mit.edu	37	chr5	32073957	32073957	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcacaaggagcctggaaaAcccagagccaacagcctcgt	10	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32073957	T	T	32073957	3	4	160	1	0	0	0	0	1	0	0	0	11795	40	2	5	2811	5	PDZD2	5	32073957	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	8547015	32073957	148841303	371	134199											
RXFP3	51289	broad.mit.edu	37	chr5	33937275	33937275	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgggcggtggagaacgctCttgacttcaaatggcccttc	12	11	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33937275	G	G	33937275	3	3	160	1	0	0	0	0	1	0	0	0	13872	913	32	4	432	4	RXFP3	5	33937275	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1863318	33937275	146977985	372	134200											
RXFP3	51289	broad.mit.edu	37	chr5	33938220	33938220	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtggtctacagcggggggCgctacgacctgctgcccagc	15	14	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33938220	T	T	33938220	3	4	160	1	0	0	0	0	1	0	0	0	13872	768	27	4	1377	4	RXFP3	5	33938220	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	945	33938220	146977040	373	134201											
FYB	2533	broad.mit.edu	37	chr5	39134992	39134992	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcccaaccattttcctTctgggttgtctgtgatgcgg	10	11	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39134992	A	A	39134992	3	1	160	1	0	0	0	0	1	0	0	0	6184	1783	62	5	897	5	FYB	5	39134992	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	5196772	39134992	141780268	374	134202											
C7	730	broad.mit.edu	37	chr5	40965093	40965093	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttcctttcctgtaaggctGacatgatcctgttcaagttt	7	11	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40965093	T	T	40965093	1	4	160	0	1	0	0	0	0	0	0	0	2400	1305	45	3		3	C7	5	40965093	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1830101	40965093	139950167	375	134203											
HEATR7B2	133558	broad.mit.edu	37	chr5	41055817	41055817	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttggcatgaaataaacCatgttggcttcaaccctctt	6	11	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41055817	A	A	41055817	1	1	160	0	1	0	0	0	0	0	0	0	7102	609	21	2		2	HEATR7B2	5	41055817	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	90724	41055817	139859443	376	134204											
ZNF131	7690	broad.mit.edu	37	chr5	43174960	43174960	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtgggccgaattcagactGaagaaggtactgaagtacat	12	6	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43174960	A	A	43174960	3	1	160	1	0	0	0	0	1	0	0	0	17847	1291	45	4	1521	4	ZNF131	5	43174960	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2119143	43174960	137740300	377	134205											
ITGA2	3673	broad.mit.edu	37	chr5	52377468	52377468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatcaatccactgaaaatagGacaaacatcttcttctgtat	4	9	4	1	rs139705254		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52377468	T	T	52377468	3	4	160	1	0	0	0	0	1	0	0	0	7945	1174	41	3	3188	3	ITGA2	5	52377468	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	9202508	52377468	128537792	378	134206											
PDE4D	5144	broad.mit.edu	37	chr5	58271612	58271612	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtccactggcggtacagctGgagaggctttgttgggttgc	16	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58271612	A	A	58271612	4	1	160	1	0	0	0	0	0	1	0	0	11736	1357	47	4	552	4	PDE4D	5	58271612	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5894144	58271612	122643648	379	134207											
HTR1A	3350	broad.mit.edu	37	chr5	63256706	63256706	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcgtcaccttgcctcaCcgcgccattggcgcacagag	10	17	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63256706	T	T	63256706	3	4	160	1	0	0	0	0	1	0	0	0	7506	507	18	4	430	4	HTR1A	5	63256706	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4985094	63256706	117658554	380	134208			2	103		3	3	222	N	G_C	3.19356e-05
HTR1A	3350	broad.mit.edu	37	chr5	63256880	63256880	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcttgcggatgcggaagcGcgcagctcggaatatgcgcc	15	12	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63256880	A	A	63256880	3	1	160	1	0	0	0	0	1	0	0	0	7506	1087	38	4	604	4	HTR1A	5	63256880	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	174	63256880	117658380	381	134209			2	103		3	3	222	N	G_C	3.19356e-05
HTR1A	3350	broad.mit.edu	37	chr5	63256927	63256927	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccagcatgagcagcagcGggatgtagaaagctccaaag	13	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63256927	A	A	63256927	3	1	160	1	0	0	0	0	1	0	0	0	7506	1116	39	4	651	4	HTR1A	5	63256927	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	47	63256927	117658333	382	134210			2	103		3	3	222	N	G_C	3.19356e-05
CDK7	1022	broad.mit.edu	37	chr5	68557894	68557894	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattatatttaaaacttcatGaaagagtatggtatctagtc	6	4	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68557894	A	A	68557894	1	1	160	0	1	0	0	0	0	0	0	0	3179	1305	45	4		4	CDK7	5	68557894	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	5300967	68557894	112357366	383	134211											
TNPO1	3842	broad.mit.edu	37	chr5	72201204	72201204	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccagtttcctcttcccttAaaagagcgtcttgcagcttt	7	12	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72201204	G	G	72201204	2	3	160	1	0	0	0	0	0	0	0	1	16458	359	13	5		5	TNPO1	5	72201204	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	3643310	72201204	108714056	384	134212											
THBS4	7060	broad.mit.edu	37	chr5	79378216	79378216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggaggcccctccggccGtgttgtccgcagggtacgat	14	13	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79378216	T	T	79378216	1	4	160	0	1	0	0	0	0	0	0	0	15979	1160	40	3		3	THBS4	5	79378216	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	7177012	79378216	101537044	385	134213											
SERINC5	256987	broad.mit.edu	37	chr5	79473158	79473158	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcagaaaggtgtcctgatCtggaatgaagaaagctcctg	12	7	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79473158	A	A	79473158	3	1	160	1	0	0	0	0	1	0	0	0	14196	913	32	3	1023	3	SERINC5	5	79473158	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	94942	79473158	101442102	386	134214											
FER	2241	broad.mit.edu	37	chr5	108516501	108516501	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaataatgttctgaaaatcaGtgactttggaatgtctcgtc	8	6	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108516501	A	A	108516501	3	1	160	1	0	0	0	0	1	0	0	0	5870	1029	36	4	2164	4	FER	5	108516501	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	29043343	108516501	72398759	387	134215											
DMXL1	1657	broad.mit.edu	37	chr5	118500202	118500202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttttacatttcttcagGcctgtctacaagtcattttg	5	9	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118500202	T	T	118500202	3	4	160	1	0	0	0	0	1	0	0	0	4634	1217	42	3	4781	3	DMXL1	5	118500202	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	9983701	118500202	62415058	388	134216											
SNCAIP	9627	broad.mit.edu	37	chr5	121726747	121726747	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggttgtaaaacggctaaaTttttttgcctttcttttctg	7	6	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121726747	A	A	121726747	1	1	160	0	1	0	0	0	0	0	0	0	14955	1508	52	5		5	SNCAIP	5	121726747	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	3226545	121726747	59188513	389	134217											
MEGF10	84466	broad.mit.edu	37	chr5	126769092	126769092	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgctgagggacgctgGggccccaactgctccctgcc	15	14	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126769092	A	A	126769092	4	1	160	1	0	0	0	0	0	1	0	0	9553	1241	43	4	1781	4	MEGF10	5	126769092	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5042345	126769092	54146168	390	134218											
FBN2	2201	broad.mit.edu	37	chr5	127692897	127692897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatattctgtttttatccGtagtaaggcctgagatctgt	8	7	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127692897	T	T	127692897	1	4	160	0	1	0	0	0	0	0	0	0	5760	1160	40	3		3	FBN2	5	127692897	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	923805	127692897	53222363	391	134219											
SEPT8	23176	broad.mit.edu	37	chr5	132097248	132097248	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggctgtgggtctgctcgcgGaggtcttccatgttcacccg	14	13	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132097248	A	A	132097248	2	1	160	1	0	0	0	0	0	0	0	1	14183	1161	41	4		4	SEPT8	5	132097248	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	4404351	132097248	48818012	392	134220											
TGFBI	7045	broad.mit.edu	37	chr5	135390519	135390519	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccctggaaactctgggcgGcaaaaaactgagagtttttg	12	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135390519	A	A	135390519	3	1	160	1	0	0	0	0	1	0	0	0	15943	1203	42	4	1417	4	TGFBI	5	135390519	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3293271	135390519	45524741	393	134221											
CDC25C	995	broad.mit.edu	37	chr5	137664244	137664244	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaaatataaagaatcagtAaaaggagttattcttgtcca	6	5	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137664244	G	G	137664244	1	3	160	0	1	0	0	0	0	0	0	0	3094	377	13	5		5	CDC25C	5	137664244	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2273725	137664244	43251016	394	134222											
CTNNA1	1495	broad.mit.edu	37	chr5	138253739	138253739	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttaatgttaaaaaagctAtcagctacagggttttcaag	7	5	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138253739	C	C	138253739	1	2	160	0	1	0	0	0	0	0	0	0	4046	464	16	5		5	CTNNA1	5	138253739	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	589495	138253739	42661521	395	134223											
SLC4A9	83697	broad.mit.edu	37	chr5	139745219	139745219	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggtggagaccaaggcagtCggtggtttctagctcttcct	14	9	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139745219	T	T	139745219	1	4	160	0	1	0	0	0	0	0	0	0	14774	899	31	4		4	SLC4A9	5	139745219	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1491480	139745219	41170041	396	134224											
HARS2	23438	broad.mit.edu	37	chr5	140073471	140073471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaactccttgtctgaaatGgacttattttttgtttttgt	6	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140073471	T	T	140073471	1	4	160	0	1	0	0	0	0	0	0	0	7026	1363	47	2		2	HARS2	5	140073471	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	328252	140073471	40841789	397	134225											
PCDHA1	56147	broad.mit.edu	37	chr5	140167035	140167035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaacgggcaggtgacttGctccttaatgccccacgtcc	10	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140167035	T	T	140167035	3	4	160	1	0	0	0	0	1	0	0	0	11613	1319	46	3	1162	3	PCDHA1	5	140167035	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	93564	140167035	40748225	398	134226											
PCDHA1	56147	broad.mit.edu	37	chr5	140168079	140168079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggtgcgtatgtgccggGcaagcccactctggtgtgct	16	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140168079	T	T	140168079	3	4	160	1	0	0	0	0	1	0	0	0	11613	1203	42	3	2206	3	PCDHA1	5	140168079	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1044	140168079	40747181	399	134227											
PCDHA4	56144	broad.mit.edu	37	chr5	140188946	140188946	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccgcgctgcggtgctctgCgctgcccaccgagggcgcgt	15	17	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140188946	T	T	140188946	3	4	160	1	0	0	0	0	1	0	0	0	11620	768	27	4	2176	4	PCDHA4	5	140188946	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	20867	140188946	40726314	400	134228											
PCDHA11	56138	broad.mit.edu	37	chr5	140250613	140250613	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggacgaggcagactcgcCgcgccaccgacttctagtac	11	16	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140250613	G	G	140250613	3	3	160	1	0	0	0	0	1	0	0	0	11615	652	23	4	1927	4	PCDHA11	5	140250613	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	61667	140250613	40664647	401	134229											
PCDHB5	26167	broad.mit.edu	37	chr5	140515678	140515678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggacggtggggctccgcCcaggtccgggaccaccacaa	14	15	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140515678	A	A	140515678	3	1	160	1	0	0	0	0	1	0	0	0	11639	623	22	2	664	2	PCDHB5	5	140515678	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	265065	140515678	40399582	402	134230											
PCDHB5	26167	broad.mit.edu	37	chr5	140515852	140515852	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatatgggagtgtagcctAtgctctattccaaggcgatg	12	8	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140515852	G	G	140515852	3	3	160	1	0	0	0	0	1	0	0	0	11639	449	16	5	838	5	PCDHB5	5	140515852	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	174	140515852	40399408	403	134231											
PCDHB6	56130	broad.mit.edu	37	chr5	140531098	140531098	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtacaacatcactatcacGgtcactgatttggggacacc	9	11	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140531098	A	A	140531098	2	1	160	1	0	0	0	0	0	0	0	1	11640	1103	39	4		4	PCDHB6	5	140531098	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	15246	140531098	40384162	404	134232											
GNPDA1	10007	broad.mit.edu	37	chr5	141385921	141385921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagacactcggttatgcCtaggccaagccaaagcccct	10	14	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141385921	A	A	141385921	1	1	160	0	1	0	0	0	0	0	0	0	6606	696	24	2		2	GNPDA1	5	141385921	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	854823	141385921	39529339	405	134233											
YIPF5	81555	broad.mit.edu	37	chr5	143545042	143545042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttgtttccatagaaaggCtgaggtgaagctggagtata	13	4	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143545042	A	A	143545042	3	1	160	1	0	0	0	0	1	0	0	0	17608	796	28	3	552	3	YIPF5	5	143545042	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2159121	143545042	37370218	406	134234											
PPP2R2B	5521	broad.mit.edu	37	chr5	146086384	146086384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggcgatctcctcgtactGtaccttgacctcagcgatga	10	12	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146086384	T	T	146086384	1	4	160	0	1	0	0	0	0	0	0	0	12486	1392	48	3		3	PPP2R2B	5	146086384	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2541342	146086384	34828876	407	134235											
IL17B	27190	broad.mit.edu	37	chr5	148756541	148756541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctcttgcttttggggctCctgggctggcccagccccag	12	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148756541	A	A	148756541	3	1	160	1	0	0	0	0	1	0	0	0	7705	854	30	3	481	3	IL17B	5	148756541	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2670157	148756541	32158719	408	134236											
PPARGC1B	133522	broad.mit.edu	37	chr5	149216164	149216164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtcctgggagccgtctGgggttcaccttgaggactgg	17	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149216164	T	T	149216164	3	4	160	1	0	0	0	0	1	0	0	0	12397	1348	47	2	2183	2	PPARGC1B	5	149216164	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	459623	149216164	31699096	409	134237											
PPARGC1B	133522	broad.mit.edu	37	chr5	149216724	149216724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggagggaggatccctGggaagcttgctctgaaactg	14	11	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149216724	T	T	149216724	1	4	160	0	1	0	0	0	0	0	0	0	12397	1363	47	2		2	PPARGC1B	5	149216724	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	560	149216724	31698536	410	134238											
FAT2	2196	broad.mit.edu	37	chr5	150920058	150920058	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctcctgctcctcactctCtgttctcccacccctcactc	2	22	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150920058	T	T	150920058	1	4	160	0	1	0	0	0	0	0	0	0	5747	928	32	4		4	FAT2	5	150920058	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1703334	150920058	29995202	411	134239											
FAT2	2196	broad.mit.edu	37	chr5	150945458	150945458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctccacatggcagagaGtcctgcgggctaggggcctc	13	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150945458	T	T	150945458	3	4	160	1	0	0	0	0	1	0	0	0	5747	1029	36	3	10106	3	FAT2	5	150945458	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	25400	150945458	29969802	412	134240											
G3BP1	10146	broad.mit.edu	37	chr5	151170658	151170658	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattattttgtagtgatccaAtacatgaaaaaagaaacaat	6	4	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151170658	G	G	151170658	1	3	160	0	1	0	0	0	0	0	0	0	6201	116	4	5		5	G3BP1	5	151170658	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	225200	151170658	29744602	413	134241											
GLRA1	2741	broad.mit.edu	37	chr5	151234537	151234537	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggatcaatgattgaatgtGtctgaaatgacctctggtcc	10	7	3	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151234537	T	T	151234537	1	4	160	0	1	0	0	0	0	0	0	0	6518	1392	48	3		3	GLRA1	5	151234537	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	63879	151234537	29680723	414	134242											
RNF145	153830	broad.mit.edu	37	chr5	158595822	158595822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctaaatatttagacaaCaaatgcatgtaaagaatatt	4	6	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158595822	A	A	158595822	1	1	160	0	1	0	0	0	0	0	0	0	13558	493	17	3		3	RNF145	5	158595822	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	7361285	158595822	22319438	415	134243											
DOCK2	1794	broad.mit.edu	37	chr5	169129310	169129310	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctccctctgcctcaggggAtgtcaggaacgacatctaca	9	14	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169129310	T	T	169129310	3	4	160	1	0	0	0	0	1	0	0	0	4727	333	12	5	1316	5	DOCK2	5	169129310	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	10533488	169129310	11785950	416	134244											
DOCK2	1794	broad.mit.edu	37	chr5	169477428	169477429	+	Intron	DNP	GG	TT	TT													ttggagaatgccctagccaaGgggccagacctgagcagccc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	169477429	TT	TT	169477428	1	4	160	0	1	0	0	0	0	0	0	0	4727	1015	35	2		2	DOCK2	5	169477428	Intron	DNP	GG	TCGA-50-5933-01A-11D-1753-08	348118	169477428	11437832	417	134245											
RANBP17	64901	broad.mit.edu	37	chr5	170305251	170305251	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattagaacaaggaacagtaAgtatttggtaacaatgatta	8	3	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170305251	T	T	170305251	1	4	160	0	1	0	0	0	0	0	0	0	13135	87	3	5		5	RANBP17	5	170305251	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	827823	170305251	10610009	418	134246											
UIMC1	51720	broad.mit.edu	37	chr5	176396453	176396453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagataaaagtatgccggaTattcttatgatctcaactac	8	7	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176396453	C	C	176396453	1	2	160	0	1	0	0	0	0	0	0	0	17097	1421	49	5		5	UIMC1	5	176396453	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	6091202	176396453	4518807	419	134247											
ZFP2	80108	broad.mit.edu	37	chr5	178339731	178339731	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctcactgggtaaggacttCttgtaactcaaaacccacct	7	12	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178339731	T	T	178339731	1	4	160	0	1	0	0	0	0	0	0	0	17767	928	32	4		4	ZFP2	5	178339731	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1943278	178339731	2575529	420	134248											
FLT4	2324	broad.mit.edu	37	chr5	180046339	180046339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgagctccgacatcagcGcgcggtgctcgctggccgtg	14	14	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180046339	A	A	180046339	3	1	160	1	0	0	0	0	1	0	0	0	6002	1087	38	4	1472	4	FLT4	5	180046339	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1706608	180046339	868921	421	134249											
KDM1B	221656	broad.mit.edu	37	chr6	18207730	18207730	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgataattgaaaaactggcAgaagggcttgacattcaact	10	6	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18207730	G	G	18207730	2	3	160	1	0	0	0	0	0	0	0	1	8193	175	7	5		5	KDM1B	6	18207730	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08		18207730	152907337	422	134250											
KIAA0319	9856	broad.mit.edu	37	chr6	24566863	24566863	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatcccggatccacagatAggacacaattctttggtcat	8	12	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24566863	T	T	24566863	3	4	160	1	0	0	0	0	1	0	0	0	8238	420	15	5	996	5	KIAA0319	6	24566863	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	6359133	24566863	146548204	423	134251											
HIST1H1E	3008	broad.mit.edu	37	chr6	26156534	26156534	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctccgccctatataaaCgggcgggcgcagcgccgcgg	15	15	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26156534	T	T	26156534	1	4	160	0	1	0	0	0	0	0	0	0	7193	551	19	4		4	HIST1H1E	6	26156534	5'Flank	SNP	C	TCGA-50-5933-01A-11D-1753-08	1589671	26156534	144958533	424	134252											
ZNF192	7745	broad.mit.edu	37	chr6	28121316	28121316	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctttcagtcagagtgcgGgccttattctgcaccagaga	12	10	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28121316	A	A	28121316	3	1	160	1	0	0	0	0	1	0	0	0	17882	1232	43	4	1276	4	ZNF192	6	28121316	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1964782	28121316	142993751	425	134253											
OR2B3	442184	broad.mit.edu	37	chr6	29054770	29054770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtctttttgttgcaacCaatatttaccaacatatgag	7	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29054770	A	A	29054770	3	1	160	1	0	0	0	0	1	0	0	0	11084	594	21	2	689	2	OR2B3	6	29054770	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	933454	29054770	142060297	426	134254											
OR2J2	26707	broad.mit.edu	37	chr6	29142069	29142069	+	Nonsense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctcattctcactacctaTggtgccattgcccgggctgt	8	13	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29142069	G	G	29142069	4	3	160	1	0	0	0	0	0	1	0	0	11097	1471	51	5	659	5	OR2J2	6	29142069	Nonsense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	87299	29142069	141972998	427	134255											
PRRT1	80863	broad.mit.edu	37	chr6	32116988	32116988	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcagagtggggccggacCaggggcgtttttagggatcc	19	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32116988	G	G	32116988	1	3	160	0	1	0	0	0	0	0	0	0	12715	609	21	4		4	PRRT1	6	32116988	3'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	2974919	32116988	138998079	428	134256											
ITPR3	3710	broad.mit.edu	37	chr6	33641319	33641319	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggaagggccttctgacctCagatcagtcctcaccccatc	8	15	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33641319	T	T	33641319	1	4	160	0	1	0	0	0	0	0	0	0	7992	841	29	4		4	ITPR3	6	33641319	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1524331	33641319	137473748	429	134257											
SNRPC	6631	broad.mit.edu	37	chr6	34725633	34725633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccatgaacagcgcttccGtggatgggcatctcagtggt	12	11	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34725633	T	T	34725633	1	4	160	0	1	0	0	0	0	0	0	0	14977	1160	40	3		3	SNRPC	6	34725633	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1084314	34725633	136389434	430	134258											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34835154	34835154	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaagacctcatctttcacCcggtcagcagctctactttc	7	14	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34835154	T	T	34835154	3	4	160	1	0	0	0	0	1	0	0	0	17094	623	22	4	3627	4	UHRF1BP1	6	34835154	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	109521	34835154	136279913	431	134259											
PNPLA1	285848	broad.mit.edu	37	chr6	36269754	36269754	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacgcagtcaaccaagccttCgagcacggcaggccagtctg	11	14	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36269754	G	G	36269754	3	3	160	1	0	0	0	0	1	0	0	0	12259	876	31	4	941	4	PNPLA1	6	36269754	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1434600	36269754	134845313	432	134260											
MDGA1	266727	broad.mit.edu	37	chr6	37622484	37622484	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccagacattagtggcaGtgtgcctggagtccctgtgg	17	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37622484	A	A	37622484	1	1	160	0	1	0	0	0	0	0	0	0	9499	1044	36	4		4	MDGA1	6	37622484	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1352730	37622484	133492583	433	134261											
ZFAND3	60685	broad.mit.edu	37	chr6	38119971	38119971	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcgcacttggaggccaCcctaacacactctttcctct	6	17	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38119971	T	T	38119971	1	4	160	0	1	0	0	0	0	0	0	0	17755	522	18	4		4	ZFAND3	6	38119971	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	497487	38119971	132995096	434	134262											
DNAH8	1769	broad.mit.edu	37	chr6	38820518	38820518	+	Frame_Shift_Del	DEL	G	-	-													tcaatgaggtgacatttcatGcaaaagactatgatcgcatc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38820518	-	-	38820518	7	5	160	1	0	1	0	1	0	0	0	0	4647	1319	46	0	5006	0	DNAH8	6	38820518	Frame_Shift_Del	DEL	G	TCGA-50-5933-01A-11D-1753-08	700547	38820518	132294549	435	134263											
TREM2	54209	broad.mit.edu	37	chr6	41127558	41127558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgtgctccacatgggcatCctcgaagctctcagactccc	9	16	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41127558	A	A	41127558	3	1	160	1	0	0	0	0	1	0	0	0	16595	855	30	3	250	3	TREM2	6	41127558	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2307040	41127558	129987509	436	134264											
USP49	25862	broad.mit.edu	37	chr6	41774568	41774568	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagtgtttcagggcgtggtCctcaatatagcggccgcagg	14	9	2	0	rs148441118	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41774568	T	T	41774568	3	4	160	1	0	0	0	0	1	0	0	0	17207	855	30	4	1784	4	USP49	6	41774568	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	647010	41774568	129340499	437	134265											
PTK7	5754	broad.mit.edu	37	chr6	43126749	43126749	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggctccccattttttcccAgagggtgaggggcagaggac	16	10	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43126749	T	T	43126749	1	4	160	0	1	0	0	0	0	0	0	0	12871	203	7	5		5	PTK7	6	43126749	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1352181	43126749	127988318	438	134266											
PTK7	5754	broad.mit.edu	37	chr6	43128366	43128366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgccccagaggcatccttGggtggctgcttgtataaact	11	10	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43128366	T	T	43128366	1	4	160	0	1	0	0	0	0	0	0	0	12871	1363	47	2		2	PTK7	6	43128366	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1617	43128366	127986701	439	134267											
SLC22A7	10864	broad.mit.edu	37	chr6	43267156	43267156	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtgagcagaaaggtcTgaacagagctgcgtccactt	14	8	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43267156	A	A	43267156	3	1	160	1	0	0	0	0	1	0	0	0	14573	1580	55	5	434	5	SLC22A7	6	43267156	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	138790	43267156	127847911	440	134268											
ZNF318	24149	broad.mit.edu	37	chr6	43322931	43322931	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacccactggatggtcagacTttaggaatggagggctgttt	14	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43322931	A	A	43322931	3	1	160	1	0	0	0	0	1	0	0	0	17962	1609	56	5	4726	5	ZNF318	6	43322931	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	55775	43322931	127792136	441	134269											
XPO5	57510	broad.mit.edu	37	chr6	43498531	43498531	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtatagaagtcttgctgcaTggaagggcctgccttcccta	11	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43498531	A	A	43498531	3	1	160	1	0	0	0	0	1	0	0	0	17574	1464	51	5	1082	5	XPO5	6	43498531	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	175600	43498531	127616536	442	134270											
MAD2L1BP	9587	broad.mit.edu	37	chr6	43604373	43604375	+	In_Frame_Del	DEL	CTT	-	-													taagcacttttaccgaaaacCttctccccaggtaggcacag							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43604375	-	-	43604373	7	5	160	1	0	1	0	1	0	0	0	0	9237	681	24	0	458	0	MAD2L1BP	6	43604373	In_Frame_Del	DEL	CTT	TCGA-50-5933-01A-11D-1753-08	105842	43604373	127510694	443	134271											
RUNX2	860	broad.mit.edu	37	chr6	45399574	45399574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgatgtgccattattGctgctgtgtttcctgtttta	8	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45399574	T	T	45399574	1	4	160	0	1	0	0	0	0	0	0	0	13859	1334	46	3		3	RUNX2	6	45399574	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1795201	45399574	125715493	444	134272											
MUT	4594	broad.mit.edu	37	chr6	49412407	49412407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccatctccgctagcagCacattcggttagtgcagcaa	8	12	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49412407	A	A	49412407	3	1	160	1	0	0	0	0	1	0	0	0	10085	710	25	3	651	3	MUT	6	49412407	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4012833	49412407	121702660	445	134273											
RHAG	6005	broad.mit.edu	37	chr6	49582494	49582494	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacgtgtttacaatggccCtgcactgtttgtctccaggt	10	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49582494	A	A	49582494	3	1	160	1	0	0	0	0	1	0	0	0	13424	681	24	2	540	2	RHAG	6	49582494	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	170087	49582494	121532573	446	134274											
DEFB110	245913	broad.mit.edu	37	chr6	49977079	49977079	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactgttccagttatgagatCatgtgtgtgcaagttggaga	12	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49977079	A	A	49977079	1	1	160	0	1	0	0	0	0	0	0	0	4439	841	29	3		3	DEFB110	6	49977079	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	394585	49977079	121137988	447	134275											
PKHD1	5314	broad.mit.edu	37	chr6	51907900	51907900	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccagagaaaccagttcCggtaatgtaaatcattaggt	9	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51907900	A	A	51907900	4	1	160	1	0	0	0	0	0	1	0	0	12066	661	23	1	9573	1	PKHD1	6	51907900	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1930821	51907900	119207167	448	134276											
DST	667	broad.mit.edu	37	chr6	56373386	56373386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattccaggatcttccaggtCccggatgaaatcttgagtat	9	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56373386	A	A	56373386	3	1	160	1	0	0	0	0	1	0	0	0	4823	855	30	3	4320	3	DST	6	56373386	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4465486	56373386	114741681	449	134277											
DST	667	broad.mit.edu	37	chr6	56482758	56482758	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttgacattaggtagctgAtaaggtctcagaacacagag	10	7	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56482758	T	T	56482758	1	4	160	0	1	0	0	0	0	0	0	0	4823	348	12	5		5	DST	6	56482758	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	109372	56482758	114632309	450	134278											
COL12A1	1303	broad.mit.edu	37	chr6	75839938	75839938	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctcaggttccttggtcCactgcgtggtactaaataaa	9	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75839938	A	A	75839938	4	1	160	1	0	0	0	0	0	1	0	0	3701	603	21	2	3232	2	COL12A1	6	75839938	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	19357180	75839938	95275129	451	134279											
ZNF292	23036	broad.mit.edu	37	chr6	87970078	87970078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggcagaccacgggattgGactaagggcaagtaaaacag	14	7	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87970078	T	T	87970078	3	4	160	1	0	0	0	0	1	0	0	0	17952	1174	41	3	6761	3	ZNF292	6	87970078	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	12130140	87970078	83144989	452	134280											
ORC3L	23595	broad.mit.edu	37	chr6	88318756	88318756	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaacatgtggcattataAcattgtttgagtggtaaggc	11	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88318756	T	T	88318756	1	4	160	0	1	0	0	0	0	0	0	0	11357	58	2	5		5	ORC3L	6	88318756	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	348678	88318756	82796311	453	134281											
GABRR1	2569	broad.mit.edu	37	chr6	89899796	89899796	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagtctactcatgaataagGaacacacactgttcctgcag	7	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89899796	A	A	89899796	1	1	160	0	1	0	0	0	0	0	0	0	6236	1189	41	4		4	GABRR1	6	89899796	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1581040	89899796	81215271	454	134282											
MDN1	23195	broad.mit.edu	37	chr6	90361967	90361967	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccagctgtctctccagctCctgtcttagctcattgacat	6	14	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90361967	T	T	90361967	3	4	160	1	0	0	0	0	1	0	0	0	9508	864	30	4	963	4	MDN1	6	90361967	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	462171	90361967	80753100	455	134283											
C6orf167	253714	broad.mit.edu	37	chr6	97677061	97677061	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccaatgtccagatttttcTgggcatacatcaagaggaag	9	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97677061	A	A	97677061	3	1	160	1	0	0	0	0	1	0	0	0	2365	1580	55	5	2031	5	C6orf167	6	97677061	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	7315094	97677061	73438006	456	134284											
FBXL4	26235	broad.mit.edu	37	chr6	99353208	99353208	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatttttgtaagtacatgttAcataatttcaaacttttatt	3	4	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99353208	T	T	99353208	1	4	160	0	1	0	0	0	0	0	0	0	5778	406	14	5		5	FBXL4	6	99353208	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1676147	99353208	71761859	457	134285											
ASCC3	10973	broad.mit.edu	37	chr6	101312109	101312109	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgaaacagagattataaTgtagaaaagtactgcttaaa	7	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101312109	A	A	101312109	1	1	160	0	1	0	0	0	0	0	0	0	1037	1479	51	5		5	ASCC3	6	101312109	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1958901	101312109	69802958	458	134286											
SOBP	55084	broad.mit.edu	37	chr6	107955303	107955303	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgcgggcctccgcaccatGcctccaaccccaacagcccc	7	23	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107955303	A	A	107955303	3	1	160	1	0	0	0	0	1	0	0	0	15026	1319	46	4	1277	4	SOBP	6	107955303	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	6643194	107955303	63159764	459	134287											
SCML4	256380	broad.mit.edu	37	chr6	108042097	108042097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcgaggaggaggggtgCaaggagcccctgtggttaaa	17	7	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108042097	A	A	108042097	3	1	160	1	0	0	0	0	1	0	0	0	14024	709	25	3	473	3	SCML4	6	108042097	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	86794	108042097	63072970	460	134288											
SLC22A16	85413	broad.mit.edu	37	chr6	110746219	110746219	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaagtagttgctagccGtttcccaagggtttctggaa	10	11	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110746219	T	T	110746219	2	4	160	1	0	0	0	0	0	0	0	1	14560	1144	40	3		3	SLC22A16	6	110746219	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2704122	110746219	60368848	461	134289											
C6orf204	387119	broad.mit.edu	37	chr6	118822287	118822287	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgctccaaactgcccgtGgagagctcagtaactgcttt	10	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118822287	A	A	118822287	1	1	160	0	1	0	0	0	0	0	0	0	2376	1363	47	4		4	C6orf204	6	118822287	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	8076068	118822287	52292780	462	134290											
PLN	5350	broad.mit.edu	37	chr6	118880304	118880304	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttaaaatctgtcatcccaTgcagacaggaaaacaatatt	6	9	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118880304	A	A	118880304	1	1	160	0	1	0	0	0	0	0	0	0	12195	1479	51	5		5	PLN	6	118880304	3'UTR	SNP	T	TCGA-50-5933-01A-11D-1753-08	58017	118880304	52234763	463	134291											
TRDN	10345	broad.mit.edu	37	chr6	123892288	123892288	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcatttcctaatcaaacAttcagaaaggaaaatataat	5	6	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123892288	G	G	123892288	1	3	160	0	1	0	0	0	0	0	0	0	16592	232	8	5		5	TRDN	6	123892288	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	5011984	123892288	47222779	464	134292											
NKAIN2	154215	broad.mit.edu	37	chr6	125144412	125144412	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtcagcccatggacctttCaaagaacttttttcgcagtg	8	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125144412	A	A	125144412	1	1	160	0	1	0	0	0	0	0	0	0	10531	841	29	3		3	NKAIN2	6	125144412	3'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	1252124	125144412	45970655	465	134293											
HINT3	135114	broad.mit.edu	37	chr6	126298798	126298798	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaattacaggctgatcaCttgattgaaaaactaagaac	6	6	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126298798	T	T	126298798	2	4	160	1	0	0	0	0	0	0	0	1	7180	564	20	4		4	HINT3	6	126298798	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	1154386	126298798	44816269	466	134294											
PTPRK	5796	broad.mit.edu	37	chr6	128411251	128411251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctagaaaatgtggaagtcaTgttttattttcctttgcttt	7	5	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128411251	A	A	128411251	1	1	160	0	1	0	0	0	0	0	0	0	12913	1479	51	5		5	PTPRK	6	128411251	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	2112453	128411251	42703816	467	134295											
EPB41L2	2037	broad.mit.edu	37	chr6	131216229	131216229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagtccattagcacacaCgcccagcttgatgtccacac	8	14	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131216229	A	A	131216229	3	1	160	1	0	0	0	0	1	0	0	0	5195	536	19	3	1794	3	EPB41L2	6	131216229	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2804978	131216229	39898838	468	134296											
EYA4	2070	broad.mit.edu	37	chr6	133849880	133849880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcacaacatgcccttctgGaggatatccagtcactcaga	8	13	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133849880	T	T	133849880	3	4	160	1	0	0	0	0	1	0	0	0	5374	1183	41	3	2036	3	EYA4	6	133849880	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2633651	133849880	37265187	469	134297											
KIAA1244	57221	broad.mit.edu	37	chr6	138629992	138629992	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttatgaagtttgtcaaaGgactgggtaagcagaaccct	11	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138629992	T	T	138629992	4	4	160	1	0	0	0	0	0	1	0	0	8287	1001	35	2	4184	2	KIAA1244	6	138629992	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4780112	138629992	32485075	470	134298											
GPR126	57211	broad.mit.edu	37	chr6	142736158	142736158	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaacactaaagtcctcaCtttcatcagctatattgggt	6	9	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142736158	G	G	142736158	3	3	160	1	0	0	0	0	1	0	0	0	6705	565	20	4	2668	4	GPR126	6	142736158	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4106166	142736158	28378909	471	134299											
UTRN	7402	broad.mit.edu	37	chr6	144745141	144745141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaattagtgaatatagGgggaactgacattgtggatg	16	2	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144745141	T	T	144745141	3	4	160	1	0	0	0	0	1	0	0	0	17230	1232	43	2	350	2	UTRN	6	144745141	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2008983	144745141	26369926	472	134300											
KATNA1	11104	broad.mit.edu	37	chr6	149959680	149959680	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactaatcataagaagacTcatgttcaactgtaagctaa	5	9	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149959680	C	C	149959680	3	2	160	1	0	0	0	0	1	0	0	0	8054	1551	54	5	1511	5	KATNA1	6	149959680	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	5214539	149959680	21155387	473	134301											
SYNE1	23345	broad.mit.edu	37	chr6	152466647	152466647	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatttttgattgcattttcTgtgagttttacataggcctc	8	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152466647	C	C	152466647	1	2	160	0	1	0	0	0	0	0	0	0	15564	1567	55	5		5	SYNE1	6	152466647	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	2506967	152466647	18648420	474	134302											
SYNE1	23345	broad.mit.edu	37	chr6	152527394	152527394	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcagcgagttcggcctgcAaggcggcctcagcgccactg	13	14	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152527394	C	C	152527394	3	2	160	1	0	0	0	0	1	0	0	0	15564	131	5	5	3622	5	SYNE1	6	152527394	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	60747	152527394	18587673	475	134303											
SYNE1	23345	broad.mit.edu	37	chr6	152748945	152748945	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaaggatgatagttctttCtctagcctaaaggaagcaga	9	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152748945	G	G	152748945	3	3	160	1	0	0	0	0	1	0	0	0	15564	912	32	4	21919	4	SYNE1	6	152748945	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	221551	152748945	18366122	476	134304											
SYNE1	23345	broad.mit.edu	37	chr6	152774700	152774700	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattgaggatgcacggtgtCtccgtcctgtcctgactcac	10	13	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152774700	T	T	152774700	1	4	160	0	1	0	0	0	0	0	0	0	15564	928	32	4		4	SYNE1	6	152774700	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	25755	152774700	18340367	477	134305											
IGF2R	3482	broad.mit.edu	37	chr6	160485620	160485620	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccaccctcaggctgctggGatcatattagaaagaatctg	9	12	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160485620	T	T	160485620	1	4	160	0	1	0	0	0	0	0	0	0	7646	1189	41	3		3	IGF2R	6	160485620	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	7710920	160485620	10629447	478	134306											
LPA	4018	broad.mit.edu	37	chr6	161012107	161012107	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactaatctcagcatctggaTtcctgcagtagttcctggtc	9	11	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161012107	A	A	161012107	3	1	160	1	0	0	0	0	1	0	0	0	8990	1493	52	5	2534	5	LPA	6	161012107	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	526487	161012107	10102960	479	134307											
PLG	5340	broad.mit.edu	37	chr6	161135904	161135904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactggaatgccaggcctGggactctcagagcccacacg	13	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161135904	T	T	161135904	3	4	160	1	0	0	0	0	1	0	0	0	12181	1357	47	2	652	2	PLG	6	161135904	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	123797	161135904	9979163	480	134308											
C6orf118	168090	broad.mit.edu	37	chr6	165715846	165715846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttccacagtaagtcagctGgtgcactggctgagaggcgt	14	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165715846	T	T	165715846	1	4	160	0	1	0	0	0	0	0	0	0	2346	1363	47	2		2	C6orf118	6	165715846	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	4579942	165715846	5399221	481	134309											
PDE10A	10846	broad.mit.edu	37	chr6	165989971	165989971	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaaagtcttctctacccCcatctcttcaactgtaacat	2	15	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165989971	A	A	165989971	1	1	160	0	1	0	0	0	0	0	0	0	11724	638	22	2		2	PDE10A	6	165989971	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	274125	165989971	5125096	482	134310											
MLLT4	4301	broad.mit.edu	37	chr6	168281294	168281294	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagattttcagcctaccatAtcatttagaatctgataatt	4	8	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168281294	C	C	168281294	1	2	160	0	1	0	0	0	0	0	0	0	9722	464	16	5		5	MLLT4	6	168281294	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2291323	168281294	2833773	483	134311											
THBS2	7058	broad.mit.edu	37	chr6	169637732	169637732	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acactcactgcgggtgtcacActtgctcagactgcaagccc	9	15	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169637732	C	C	169637732	3	2	160	1	0	0	0	0	1	0	0	0	15977	159	6	5	2290	5	THBS2	6	169637732	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	1356438	169637732	1477335	484	134312											
MAD1L1	8379	broad.mit.edu	37	chr7	2041803	2041803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactgtggtgggccaggcCccatttctaggactgcaggg	16	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2041803	A	A	2041803	1	1	160	0	1	0	0	0	0	0	0	0	9235	638	22	2		2	MAD1L1	7	2041803	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08		2041803	157096860	485	134313											
FOXK1	221937	broad.mit.edu	37	chr7	4800592	4800592	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacctattttttcccagtGccgacctcactttccccact	3	17	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4800592	T	T	4800592	1	4	160	0	1	0	0	0	0	0	0	0	6074	1334	46	3		3	FOXK1	7	4800592	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2758789	4800592	154338071	486	134314											
RADIL	55698	broad.mit.edu	37	chr7	4856039	4856039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgaggaccagctctcacGgcgctccgtctggaatggcg	15	14	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4856039	T	T	4856039	3	4	160	1	0	0	0	0	1	0	0	0	13105	1116	39	1	1473	1	RADIL	7	4856039	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	55447	4856039	154282624	487	134315											
WIPI2	26100	broad.mit.edu	37	chr7	5239104	5239104	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgatttgtggagggcacGcggggaacttgctgggaact	17	7	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5239104	C	C	5239104	1	2	160	0	1	0	0	0	0	0	0	0	17498	1102	38	4		4	WIPI2	7	5239104	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	383065	5239104	153899559	488	134316											
FBXL18	80028	broad.mit.edu	37	chr7	5540260	5540260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatattgaccagcccggagCccgtaaggacgctgggcagc	14	13	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5540260	A	A	5540260	3	1	160	1	0	0	0	0	1	0	0	0	5771	739	26	3	528	3	FBXL18	7	5540260	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	301156	5540260	153598403	489	134317											
C7orf26	79034	broad.mit.edu	37	chr7	6631427	6631427	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagccggatgagcttgttgGgaaaactggtctccatggcg	14	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6631427	T	T	6631427	4	4	160	1	0	0	0	0	0	1	0	0	2406	1233	43	2	349	2	C7orf26	7	6631427	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1091167	6631427	152507236	490	134318											
TMEM195	392636	broad.mit.edu	37	chr7	15433927	15433927	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatttcagggttggtatcaGagagtggaaaaaagttccac	12	5	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15433927	A	A	15433927	1	1	160	0	1	0	0	0	0	0	0	0	16240	957	33	4		4	TMEM195	7	15433927	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	8802500	15433927	143704736	491	134319											
ANKMY2	57037	broad.mit.edu	37	chr7	16666776	16666776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgagttttcctttatatgCtgcatgcattagaggagtca	9	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16666776	A	A	16666776	3	1	160	1	0	0	0	0	1	0	0	0	635	797	28	3	1197	3	ANKMY2	7	16666776	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1232849	16666776	142471887	492	134320											
BZW2	28969	broad.mit.edu	37	chr7	16745808	16745808	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacttggcttctgttttcGcaaaggaaaaaaaaaatagg	9	5	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16745808	T	T	16745808	1	4	160	0	1	0	0	0	0	0	0	0	1589	1102	38	3		3	BZW2	7	16745808	3'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	79032	16745808	142392855	493	134321											
FERD3L	222894	broad.mit.edu	37	chr7	19184913	19184913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggagagggcgtctcgGggaggccagggacaggtctg	21	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19184913	T	T	19184913	3	4	160	1	0	0	0	0	1	0	0	0	5873	1232	43	2	431	2	FERD3L	7	19184913	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2439105	19184913	139953750	494	134322											
DNAH11	8701	broad.mit.edu	37	chr7	21901406	21901406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttaaactgttgccctgtgtAtcgggggtagctagacatcc	11	10	0	1	rs144553224	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21901406	T	T	21901406	1	4	160	0	1	0	0	0	0	0	0	0	4639	464	16	5		5	DNAH11	7	21901406	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2716493	21901406	137237257	495	134323											
IGF2BP3	10643	broad.mit.edu	37	chr7	23383458	23383458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgttctggattatacagcGtcaattcctgcaatctgcag	9	10	3	0	rs149351958		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23383458	T	T	23383458	3	4	160	1	0	0	0	0	1	0	0	0	7645	1145	40	3	811	3	IGF2BP3	7	23383458	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1482052	23383458	135755205	496	134324											
NPY	4852	broad.mit.edu	37	chr7	24329252	24329252	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagctcaaggtgcccagggGagggaagtcagagacaggtg	18	7	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24329252	A	A	24329252	1	1	160	0	1	0	0	0	0	0	0	0	10702	1189	41	4		4	NPY	7	24329252	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	945794	24329252	134809411	497	134325											
CPVL	54504	broad.mit.edu	37	chr7	29111439	29111439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgttctatgcattcatGgcactgcttctggaagtact	10	8	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29111439	T	T	29111439	3	4	160	1	0	0	0	0	1	0	0	0	3867	1348	47	2	636	2	CPVL	7	29111439	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4782187	29111439	130027224	498	134326											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31124845	31124845	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagataaagccacagagttgGcccaccacagatgcccacat	9	13	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31124845	A	A	31124845	1	1	160	0	1	0	0	0	0	0	0	0	303	1218	42	4		4	ADCYAP1R1	7	31124845	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2013406	31124845	128013818	499	134327											
CCDC129	223075	broad.mit.edu	37	chr7	31683245	31683245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagactggggacaaaagCaagacagttaaatgatgctt	10	6	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31683245	A	A	31683245	3	1	160	1	0	0	0	0	1	0	0	0	2790	710	25	3	2299	3	CCDC129	7	31683245	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	558400	31683245	127455418	500	134328											
NPSR1	387129	broad.mit.edu	37	chr7	34888198	34888198	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgcctctgtgatcattcaGaacctgccagcattgaatag	8	10	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34888198	T	T	34888198	3	4	160	1	0	0	0	0	1	0	0	0	10695	933	33	3	978	3	NPSR1	7	34888198	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3204953	34888198	124250465	501	134329											
SFRP4	6424	broad.mit.edu	37	chr7	37946949	37946949	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttaagaaaaatgctgcaaGatgtgtctatgaagagcact	9	7	1	4	rs62446002	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37946949	T	T	37946949	1	4	160	0	1	0	0	0	0	0	0	0	14276	957	33	3		3	SFRP4	7	37946949	3'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	3058751	37946949	121191714	502	134330											
VPS41	27072	broad.mit.edu	37	chr7	38810739	38810739	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcaaattattttcagTctcactataacttattgaaa	2	7	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38810739	A	A	38810739	1	1	160	0	1	0	0	0	0	0	0	0	17337	1682	58	5		5	VPS41	7	38810739	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	863790	38810739	120327924	503	134331											
POLD2	5425	broad.mit.edu	37	chr7	44154838	44154838	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcttctctgtgaaccttgtCcccaggtgagagcaaatcag	9	11	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44154838	A	A	44154838	1	1	160	0	1	0	0	0	0	0	0	0	12286	870	30	3		3	POLD2	7	44154838	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5344099	44154838	114983825	504	134332											
CAMK2B	816	broad.mit.edu	37	chr7	44281962	44281962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaaggaaacagcgccccGgccgggcctgaagctccctc	13	16	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44281962	T	T	44281962	1	4	160	0	1	0	0	0	0	0	0	0	2626	1131	39	1		1	CAMK2B	7	44281962	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	127124	44281962	114856701	505	134333											
CAMK2B	816	broad.mit.edu	37	chr7	44302698	44302698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaggcgtcacctcctgCgccagcaactggtggcccag	11	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44302698	T	T	44302698	1	4	160	0	1	0	0	0	0	0	0	0	2626	783	27	4		4	CAMK2B	7	44302698	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	20736	44302698	114835965	506	134334											
ABCA13	154664	broad.mit.edu	37	chr7	48335273	48335273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtatgtgtgcttctaacCtatatcattgctatgttttc	6	7	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48335273	A	A	48335273	1	1	160	0	1	0	0	0	0	0	0	0	31	696	24	2		2	ABCA13	7	48335273	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4032575	48335273	110803390	507	134335											
POM121L12	285877	broad.mit.edu	37	chr7	53103646	53103646	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccgcagcgggtggtctcCgagggctggaggcgccctgc	18	13	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103646	T	T	53103646	2	4	160	1	0	0	0	0	0	0	0	1	12336	639	23	4		4	POM121L12	7	53103646	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	4768373	53103646	106035017	508	134336											
EGFR	1956	broad.mit.edu	37	chr7	55242489	55242489	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaagagaagcaacatctccGaaagccaacaaggaaatcct	7	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55242489	T	T	55242489	2	4	160	1	0	0	0	0	0	0	0	1	5007	1045	37	3		3	EGFR	7	55242489	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2138843	55242489	103896174	509	134337											
ZNF479	90827	broad.mit.edu	37	chr7	57188660	57188661	+	Frame_Shift_Ins	INS	-	T	T													tatgagtctgaaatattttgINSttttgggtagttgacaaaca							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188661	T	T	57188660	7	5	160	1	0	1	1	0	0	0	0	0	18060	1368	48	0	1116	0	ZNF479	7	57188660	Frame_Shift_Ins	INS	-	TCGA-50-5933-01A-11D-1753-08	1946171	57188660	101950003	510	134338											
ZNF735	730291	broad.mit.edu	37	chr7	63679724	63679724	+	Frame_Shift_Del	DEL	C	-	-													atttcaaccaagaccttcagCcagagcagagcataaaagat							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63679724	-	-	63679724	7	5	160	1	0	1	0	1	0	0	0	0	18253	739	26	0	309	0	ZNF735	7	63679724	Frame_Shift_Del	DEL	C	TCGA-50-5933-01A-11D-1753-08	6491064	63679724	95458939	511	134339											
CALN1	83698	broad.mit.edu	37	chr7	71275515	71275515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgagatggtcagaagcatGtggagatgggaagttggctc	17	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71275515	T	T	71275515	1	4	160	0	1	0	0	0	0	0	0	0	2617	1392	48	3		3	CALN1	7	71275515	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	7595791	71275515	87863148	512	134340											
CLDN4	1364	broad.mit.edu	37	chr7	73245828	73245828	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcgtgctgctgtccgtGgtggggggcaagtgtaccaa	18	9	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73245828	T	T	73245828	2	4	160	1	0	0	0	0	0	0	0	1	3519	1335	47	2		2	CLDN4	7	73245828	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1970313	73245828	85892835	513	134341											
CLIP2	7461	broad.mit.edu	37	chr7	73811540	73811540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggatgacatccggggcCtgcgtgaaaagctgaccggg	15	10	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73811540	A	A	73811540	3	1	160	1	0	0	0	0	1	0	0	0	3565	680	24	2	2907	2	CLIP2	7	73811540	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	565712	73811540	85327123	514	134342											
PCLO	27445	broad.mit.edu	37	chr7	82785355	82785355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttatgattccttcaggttttCcttgctccttctgaaccact	5	12	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82785355	A	A	82785355	3	1	160	1	0	0	0	0	1	0	0	0	11677	855	30	3	14939	3	PCLO	7	82785355	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	8973815	82785355	76353308	515	134343											
ABCB4	5244	broad.mit.edu	37	chr7	87074240	87074240	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attggcaaaagcatcaatacAtggggcagcctggccaacac	10	11	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87074240	T	T	87074240	3	4	160	1	0	0	0	0	1	0	0	0	43	217	8	5	2879	5	ABCB4	7	87074240	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	4288885	87074240	72064423	516	134344											
AKAP9	10142	broad.mit.edu	37	chr7	91708554	91708554	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggcaaatattggacagaaGacatcaatgaatgctcattc	8	7	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91708554	A	A	91708554	2	1	160	1	0	0	0	0	0	0	0	1	459	933	33	4		4	AKAP9	7	91708554	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	4634314	91708554	67430109	517	134345											
SAMD9	54809	broad.mit.edu	37	chr7	92731109	92731109	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccagaataagagggaagcTagaaaatacggttctgaaaa	12	5	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92731109	C	C	92731109	2	2	160	1	0	0	0	0	0	0	0	1	13937	1509	53	5		5	SAMD9	7	92731109	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	1022555	92731109	66407554	518	134346											
CYP3A4	1576	broad.mit.edu	37	chr7	99375532	99375532	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagaacttctctctgtttGtagttaggttgacaagagct	10	7	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99375532	A	A	99375532	1	1	160	0	1	0	0	0	0	0	0	0	4211	1392	48	4		4	CYP3A4	7	99375532	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	6644423	99375532	59763131	519	134347											
TFR2	7036	broad.mit.edu	37	chr7	100231030	100231030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgccccccgcccgcgcgCgcactcacggatccgggaat	13	20	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100231030	A	A	100231030	1	1	160	0	1	0	0	0	0	0	0	0	15934	783	27	3		3	TFR2	7	100231030	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	855498	100231030	58907633	520	134348											
MUC17	140453	broad.mit.edu	37	chr7	100676084	100676084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatgcctgtcagcaccactCcagtggccagttctgaggct	11	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100676084	A	A	100676084	3	1	160	1	0	0	0	0	1	0	0	0	10068	855	30	3	1397	3	MUC17	7	100676084	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	445054	100676084	58462579	521	134349											
MUC17	140453	broad.mit.edu	37	chr7	100684682	100684682	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccaattgctgacggtactAgcatgccaacctcaacttat	6	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100684682	T	T	100684682	3	4	160	1	0	0	0	0	1	0	0	0	10068	420	15	5	9995	5	MUC17	7	100684682	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	8598	100684682	58453981	522	134350											
MUC17	140453	broad.mit.edu	37	chr7	100684721	100684721	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagtgaaggaagcactccaCtaacaaatatgtctttcagc	7	9	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100684721	G	G	100684721	3	3	160	1	0	0	0	0	1	0	0	0	10068	564	20	4	10034	4	MUC17	7	100684721	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	39	100684721	58453942	523	134351											
SLC26A5	375611	broad.mit.edu	37	chr7	103015135	103015135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatagtgtttttttttttGttattgttttttgtttcttt	5	2	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103015135	T	T	103015135	1	4	160	0	1	0	0	0	0	0	0	0	14634	1392	48	3		3	SLC26A5	7	103015135	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2330414	103015135	56123528	524	134352											
RELN	5649	broad.mit.edu	37	chr7	103338560	103338560	+	Intron	DEL	G	-	-													tctggaacatacagagagatGgcaagtttagcaatgctgac							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103338560	-	-	103338560	6	5	160	0	1	1	0	1	0	0	0	0	13328	1363	47	0		0	RELN	7	103338560	Intron	DEL	G	TCGA-50-5933-01A-11D-1753-08	323425	103338560	55800103	525	134353											
ORC5L	5001	broad.mit.edu	37	chr7	103767298	103767298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttgaagcttgttttcaCaagaaatcatacaagtattt	7	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103767298	A	A	103767298	3	1	160	1	0	0	0	0	1	0	0	0	11359	477	17	3	6	3	ORC5L	7	103767298	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	428738	103767298	55371365	526	134354											
SLC26A3	1811	broad.mit.edu	37	chr7	107427257	107427257	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgcatggtgatgccatcatCgaagacacacttacccagga	10	11	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107427257	G	G	107427257	1	3	160	0	1	0	0	0	0	0	0	0	14632	899	31	4		4	SLC26A3	7	107427257	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3659959	107427257	51711406	527	134355											
TES	26136	broad.mit.edu	37	chr7	115857786	115857786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttctttgagtaaatatccAtgtttaaaatttgcctcaag	6	6	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115857786	G	G	115857786	1	3	160	0	1	0	0	0	0	0	0	0	15887	232	8	5		5	TES	7	115857786	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	8430529	115857786	43280877	528	134356											
MET	4233	broad.mit.edu	37	chr7	116339431	116339431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacccagattgtttcccatGtcaggactgcagcagcaaag	9	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116339431	T	T	116339431	3	4	160	1	0	0	0	0	1	0	0	0	9578	1377	48	3	295	3	MET	7	116339431	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	481645	116339431	42799232	529	134357											
ASZ1	136991	broad.mit.edu	37	chr7	117024854	117024854	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagcattttattagctcCaagttcaagcaacttcaaaa	5	8	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117024854	T	T	117024854	3	4	160	1	0	0	0	0	1	0	0	0	1073	603	21	4	846	4	ASZ1	7	117024854	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	685423	117024854	42113809	530	134358											
C7orf58	79974	broad.mit.edu	37	chr7	120906829	120906829	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcagtggcttaattccaAtcacctgcaaattattcaca	5	10	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120906829	G	G	120906829	3	3	160	1	0	0	0	0	1	0	0	0	2430	101	4	5	2720	5	C7orf58	7	120906829	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	3881975	120906829	38231834	531	134359											
PTPRZ1	5803	broad.mit.edu	37	chr7	121568130	121568130	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaatcaagaactatttatGgtatgaataatttgggcatc	8	4	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121568130	A	A	121568130	1	1	160	0	1	0	0	0	0	0	0	0	12922	1363	47	4		4	PTPRZ1	7	121568130	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	661301	121568130	37570533	532	134360											
SLC13A1	6561	broad.mit.edu	37	chr7	122787429	122787429	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttatggactgaatatttGtgtcccaccacccgcaccaa	7	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122787429	T	T	122787429	1	4	160	0	1	0	0	0	0	0	0	0	14504	1392	48	3		3	SLC13A1	7	122787429	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1219299	122787429	36351234	533	134361											
HYAL4	23553	broad.mit.edu	37	chr7	123516883	123516883	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaatgtgaccagagctgctGaggtatgcagccttcacctc	10	13	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123516883	A	A	123516883	3	1	160	1	0	0	0	0	1	0	0	0	7536	1291	45	4	1130	4	HYAL4	7	123516883	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	729454	123516883	35621780	534	134362											
GRM8	2918	broad.mit.edu	37	chr7	126746619	126746619	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcccctcagaagccagtgTcgaaacataattccatccca	6	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126746619	A	A	126746619	3	1	160	1	0	0	0	0	1	0	0	0	6869	1667	58	5	2154	5	GRM8	7	126746619	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3229736	126746619	32392044	535	134363											
PLXNA4	91584	broad.mit.edu	37	chr7	131815418	131815418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaagatggtgtggatgtGgtcagaagcccgggaagcca	15	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131815418	T	T	131815418	1	4	160	0	1	0	0	0	0	0	0	0	12217	1363	47	2		2	PLXNA4	7	131815418	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	5068799	131815418	27323245	536	134364											
PLXNA4	91584	broad.mit.edu	37	chr7	131866996	131866996	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaaatgataagttcaggaaGagcaatggcactctacaatg	10	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131866996	T	T	131866996	1	4	160	0	1	0	0	0	0	0	0	0	12217	957	33	3		3	PLXNA4	7	131866996	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	51578	131866996	27271667	537	134365											
WDR91	29062	broad.mit.edu	37	chr7	134896260	134896260	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacggcctccgccatcgcagCgctagcgtctttaggggtgg	14	14	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134896260	G	G	134896260	1	3	160	0	1	0	0	0	0	0	0	0	17465	783	27	4		4	WDR91	7	134896260	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	3029264	134896260	24242403	538	134366											
FAM180A	389558	broad.mit.edu	37	chr7	135418761	135418761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtgaggagcgcatcaagtCgtgcctcagggcctggaaga	15	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135418761	T	T	135418761	3	4	160	1	0	0	0	0	1	0	0	0	5552	884	31	4	41	4	FAM180A	7	135418761	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	522501	135418761	23719902	539	134367											
CHRM2	1129	broad.mit.edu	37	chr7	136700873	136700873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttgcatccccaacactGtgtggacaattggttactgg	9	12	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700873	T	T	136700873	3	4	160	1	0	0	0	0	1	0	0	0	3408	1377	48	3	1263	3	CHRM2	7	136700873	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1282112	136700873	22437790	540	134368											
TBXAS1	6916	broad.mit.edu	37	chr7	139661722	139661722	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttttgttccttagaggcGgagagacttcctccaaatgg	10	10	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139661722	A	A	139661722	3	1	160	1	0	0	0	0	1	0	0	0	15786	1116	39	4	1003	4	TBXAS1	7	139661722	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2960849	139661722	19476941	541	134369											
BRAF	673	broad.mit.edu	37	chr7	140508693	140508693	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcacatacaaaccataccCatcctgaattctgtaaacag	4	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140508693	A	A	140508693	4	1	160	1	0	0	0	0	0	1	0	0	1505	608	21	2	1753	2	BRAF	7	140508693	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	846971	140508693	18629970	542	134370											
PRSS1	5644	broad.mit.edu	37	chr7	142459541	142459541	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccagagctgtccatgagcAgagagcttgaggaacctggg	14	10	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142459541	T	T	142459541	1	4	160	0	1	0	0	0	0	0	0	0	12720	203	7	5		5	PRSS1	7	142459541	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1950848	142459541	16679122	543	134371											
PRSS1	5644	broad.mit.edu	37	chr7	142459766	142459766	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgttaatcaagctctcCtcacgtgcagtaatcaacgc	6	12	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142459766	A	A	142459766	2	1	160	1	0	0	0	0	0	0	0	1	12720	668	24	2		2	PRSS1	7	142459766	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	225	142459766	16678897	544	134372											
EPHB6	2051	broad.mit.edu	37	chr7	142564038	142564038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagccctgaccctcctcagGctgcagccatcaatgtcagc	8	17	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142564038	T	T	142564038	3	4	160	1	0	0	0	0	1	0	0	0	5220	1203	42	3	1444	3	EPHB6	7	142564038	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	104272	142564038	16574625	545	134373											
CLCN1	1180	broad.mit.edu	37	chr7	143038936	143038936	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagggtcatgtctctcattCcgtgttattcccatcccatc	6	15	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143038936	T	T	143038936	1	4	160	0	1	0	0	0	0	0	0	0	3493	870	30	4		4	CLCN1	7	143038936	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	474898	143038936	16099727	546	134374											
EPHA1	2041	broad.mit.edu	37	chr7	143097015	143097015	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagggccacacaggcaccCgggttgtggaaagcgaggta	15	11	0	0	rs146631359	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143097015	A	A	143097015	2	1	160	1	0	0	0	0	0	0	0	1	5207	639	23	1		1	EPHA1	7	143097015	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	58079	143097015	16041648	547	134375											
TAS2R41	259287	broad.mit.edu	37	chr7	143175790	143175790	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattgcagtctacctgtgCatatctgtccatcccttcat	5	13	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143175790	A	A	143175790	4	1	160	1	0	0	0	0	0	1	0	0	15698	718	25	3	827	3	TAS2R41	7	143175790	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	78775	143175790	15962873	548	134376											
OR2A5	393046	broad.mit.edu	37	chr7	143748389	143748389	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaacgcagaggtcaagGgtgccctgaaaagagtgttg	16	6	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143748389	C	C	143748389	3	2	160	1	0	0	0	0	1	0	0	0	11075	1232	43	4	897	4	OR2A5	7	143748389	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	572599	143748389	15390274	549	134377											
CNTNAP2	26047	broad.mit.edu	37	chr7	146817986	146817986	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatggaatgtcagcctctAggtgctgtaaatgaaagatc	11	6	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146817986	T	T	146817986	1	4	160	0	1	0	0	0	0	0	0	0	3679	435	15	5		5	CNTNAP2	7	146817986	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	3069597	146817986	12320677	550	134378											
CNTNAP2	26047	broad.mit.edu	37	chr7	146997243	146997243	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacttaccaggttctgggttGaatgatggacagtggcacga	13	7	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146997243	C	C	146997243	3	2	160	1	0	0	0	0	1	0	0	0	3679	1281	45	4	1393	4	CNTNAP2	7	146997243	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	179257	146997243	12141420	551	134379											
CUL1	8454	broad.mit.edu	37	chr7	148484115	148484115	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacatagaagacaaagacgTatttcagaagttctatgcga	9	6	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148484115	G	G	148484115	3	3	160	1	0	0	0	0	1	0	0	0	4087	1638	57	5	1428	5	CUL1	7	148484115	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	1486872	148484115	10654548	552	134380											
SSPO	23145	broad.mit.edu	37	chr7	149483226	149483226	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacgccccccaaggtctaCacaggccctgggctgagcct	12	16	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149483226	A	A	149483226	4	1	160	1	0	0	0	0	0	1	0	0	15307	489	17	3	3380	3	SSPO	7	149483226	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	999111	149483226	9655437	553	134381											
NOS3	4846	broad.mit.edu	37	chr7	150703475	150703475	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttctatgtagtttgaaatGaaacaaaactaaccctgatg	6	7	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150703475	T	T	150703475	1	4	160	0	1	0	0	0	0	0	0	0	10639	1305	45	3		3	NOS3	7	150703475	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1220249	150703475	8435188	554	134382											
DPP6	1804	broad.mit.edu	37	chr7	154598648	154598648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagcttgcggcacccagCgtggagggcagctcctctcc	12	17	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154598648	A	A	154598648	1	1	160	0	1	0	0	0	0	0	0	0	4770	783	27	3		3	DPP6	7	154598648	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3895173	154598648	4540015	555	134383											
PPP1R3B	79660	broad.mit.edu	37	chr8	8998956	8998956	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattgtcagggccagccccTggttgtctgcgaaggacacc	12	14	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8998956	C	C	8998956	3	2	160	1	0	0	0	0	1	0	0	0	12473	1580	55	5	655	5	PPP1R3B	8	8998956	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08		8998956	137365066	556	134384											
RP1L1	94137	broad.mit.edu	37	chr8	10465553	10465553	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcctctacaccgtctgactCtggctgggcctcctcttctg	10	16	5	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10465553	A	A	10465553	4	1	160	1	0	0	0	0	0	1	0	0	13644	922	32	3	1151	3	RP1L1	8	10465553	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1466597	10465553	135898469	557	134385											
GATA4	2626	broad.mit.edu	37	chr8	11606472	11606472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagagtgtgtcaactgtGgggctatgtccaccccgctc	13	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11606472	T	T	11606472	3	4	160	1	0	0	0	0	1	0	0	0	6318	1348	47	2	667	2	GATA4	8	11606472	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1140919	11606472	134757550	558	134386											
DEFB134	613211	broad.mit.edu	37	chr8	11851639	11851639	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgaatttatacctggaagGaaaatgaatagaaagataat	8	2	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11851639	T	T	11851639	1	4	160	0	1	0	0	0	0	0	0	0	4458	1189	41	3		3	DEFB134	8	11851639	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	245167	11851639	134512383	559	134387											
HR	55806	broad.mit.edu	37	chr8	21978774	21978774	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatggtggggggcttcgcGtttggtccctcctcttcccc	13	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21978774	A	A	21978774	1	1	160	0	1	0	0	0	0	0	0	0	7414	1160	40	4		4	HR	8	21978774	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	10127135	21978774	124385248	560	134388											
ADAM28	10863	broad.mit.edu	37	chr8	24168942	24168942	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctagcatcagcacatgtagGggtctaaggtaagacttcag	12	8	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24168942	C	C	24168942	3	2	160	1	0	0	0	0	1	0	0	0	246	1223	43	4	393	4	ADAM28	8	24168942	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2190168	24168942	122195080	561	134389											
PPP2R2A	5520	broad.mit.edu	37	chr8	26151302	26151302	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggatatataatttttgcagAaatgtttcctactggaggat	9	4	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26151302	T	T	26151302	1	4	160	0	1	0	0	0	0	0	0	0	12485	261	9	5		5	PPP2R2A	8	26151302	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1982360	26151302	120212720	562	134390											
EPHX2	2053	broad.mit.edu	37	chr8	27378492	27378492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggtaattaaagaaaaGgcgtcagcctcgagcagagg	14	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27378492	T	T	27378492	1	4	160	0	1	0	0	0	0	0	0	0	5222	1015	35	2		2	EPHX2	8	27378492	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1227190	27378492	118985530	563	134391											
TEX15	56154	broad.mit.edu	37	chr8	30701025	30701025	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagagtccccacatacatTgatcaactttaaagtacttt	6	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30701025	C	C	30701025	3	2	160	1	0	0	0	0	1	0	0	0	15901	1812	63	5	2876	5	TEX15	8	30701025	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3322533	30701025	115662997	564	134392											
C8orf41	80185	broad.mit.edu	37	chr8	33370060	33370060	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggcctgtccaaaggcGgagtgagacaactcctcgga	14	10	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33370060	T	T	33370060	2	4	160	1	0	0	0	0	0	0	0	1	2453	1103	39	1		1	C8orf41	8	33370060	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2669035	33370060	112993962	565	134393											
UNC5D	137970	broad.mit.edu	37	chr8	35579942	35579942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataggtccctccacacctcGtcctcagtgccatagactac	6	17	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35579942	T	T	35579942	1	4	160	0	1	0	0	0	0	0	0	0	17121	1160	40	3		3	UNC5D	8	35579942	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2209882	35579942	110784080	566	134394											
KCNU1	157855	broad.mit.edu	37	chr8	36721888	36721888	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaatcccttgtgaagagatGtgccaactcactgagatttc	8	10	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36721888	A	A	36721888	1	1	160	0	1	0	0	0	0	0	0	0	8163	1392	48	4		4	KCNU1	8	36721888	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1141946	36721888	109642134	567	134395											
DDHD2	23259	broad.mit.edu	37	chr8	38110569	38110569	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtcttttaccagagctccAtaccctgccttacaagcttc	5	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38110569	G	G	38110569	2	3	160	1	0	0	0	0	0	0	0	1	4360	204	8	5		5	DDHD2	8	38110569	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	1388681	38110569	108253453	568	134396											
AGPAT6	137964	broad.mit.edu	37	chr8	41469728	41469728	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accaagaaatggtggcatctGtgtggccaatcatacctcac	9	11	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41469728	C	C	41469728	3	2	160	1	0	0	0	0	1	0	0	0	391	1377	48	4	753	4	AGPAT6	8	41469728	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3359159	41469728	104894294	569	134397											
PLAT	5327	broad.mit.edu	37	chr8	42050582	42050582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagacccctggagcctccGgaagcatcacagccttgagg	11	15	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42050582	A	A	42050582	1	1	160	0	1	0	0	0	0	0	0	0	12116	1131	39	4		4	PLAT	8	42050582	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	580854	42050582	104313440	570	134398											
SNAI2	6591	broad.mit.edu	37	chr8	49832731	49832731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcatgggggtctgaaaGcttggactgtagtctttcct	13	7	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49832731	T	T	49832731	3	4	160	1	0	0	0	0	1	0	0	0	14941	971	34	3	465	3	SNAI2	8	49832731	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	7782149	49832731	96531291	571	134399											
PXDNL	137902	broad.mit.edu	37	chr8	52366151	52366151	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgacaggtaaatcgaccatGatcccgttgtgtgatgttct	10	8	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52366151	A	A	52366151	3	1	160	1	0	0	0	0	1	0	0	0	12956	1290	45	4	3270	4	PXDNL	8	52366151	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2533420	52366151	93997871	572	134400											
NPBWR1	2831	broad.mit.edu	37	chr8	53853210	53853210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagcgcgccaagaagcGggtgaccttcctggtggtgg	17	11	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53853210	T	T	53853210	3	4	160	1	0	0	0	0	1	0	0	0	10663	1116	39	1	745	1	NPBWR1	8	53853210	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1487059	53853210	92510812	573	134401											
RP1	6101	broad.mit.edu	37	chr8	55541388	55541388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaccatctttttttcctgGgtctacccgcaaatctcagg	6	13	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55541388	T	T	55541388	3	4	160	1	0	0	0	0	1	0	0	0	13643	1232	43	2	4956	2	RP1	8	55541388	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1688178	55541388	90822634	574	134402											
SDR16C5	195814	broad.mit.edu	37	chr8	57218027	57218027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcacaatgataggactaaCaggacttaatagaattaaat	9	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57218027	A	A	57218027	1	1	160	0	1	0	0	0	0	0	0	0	14084	493	17	3		3	SDR16C5	8	57218027	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1676639	57218027	89145995	575	134403											
NKAIN3	286183	broad.mit.edu	37	chr8	63831127	63831127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaatgagatacagcttcCaaaactaatcattacagggc	7	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63831127	A	A	63831127	1	1	160	0	1	0	0	0	0	0	0	0	10532	609	21	2		2	NKAIN3	8	63831127	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	6613100	63831127	82532895	576	134404											
PREX2	80243	broad.mit.edu	37	chr8	69104797	69104797	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttgcttgcctctttgttaGatcacactttatttgatggt	7	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69104797	T	T	69104797	1	4	160	0	1	0	0	0	0	0	0	0	12583	957	33	3		3	PREX2	8	69104797	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	5273670	69104797	77259225	577	134405											
TRPA1	8989	broad.mit.edu	37	chr8	72948636	72948636	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcacaaaaatgatgccCgtcgtgtagataatccattc	9	10	0	2	rs146434598	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72948636	A	A	72948636	2	1	160	1	0	0	0	0	0	0	0	1	16702	639	23	1		1	TRPA1	8	72948636	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	3843839	72948636	73415386	578	134406											
KCNB2	9312	broad.mit.edu	37	chr8	73849102	73849102	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgtcggaaacaagctcCaacaagtctttcgagaataa	8	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73849102	A	A	73849102	2	1	160	1	0	0	0	0	0	0	0	1	8083	581	21	2		2	KCNB2	8	73849102	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	900466	73849102	72514920	579	134407											
HNF4G	3174	broad.mit.edu	37	chr8	76456054	76456055	+	5'UTR	DNP	GC	TT	TT													ttttattgacagatagttctGccccagagacaagtatgaat							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	76456055	TT	TT	76456054	1	4	160	0	1	0	0	0	0	0	0	0	7321	1319	46	3		3	HNF4G	8	76456054	5'UTR	DNP	GC	TCGA-50-5933-01A-11D-1753-08	2606952	76456054	69907968	580	134408											
HNF4G	3174	broad.mit.edu	37	chr8	76475975	76475975	+	Intron	DEL	A	-	-													aacaccttaaagtaactatgAaaaaaattttttaacatgac					rs35317176		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76475975	-	-	76475975	6	5	160	0	1	1	0	1	0	0	0	0	7321	261	9	0		0	HNF4G	8	76475975	Intron	DEL	A	TCGA-50-5933-01A-11D-1753-08	19921	76475975	69888047	581	134409											
ZFHX4	79776	broad.mit.edu	37	chr8	77776345	77776345	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaagcacttagccaacaCctccagtcaagcttgcacaa	6	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77776345	A	A	77776345	3	1	160	1	0	0	0	0	1	0	0	0	17761	506	18	3	10433	3	ZFHX4	8	77776345	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1300370	77776345	68587677	582	134410											
HEY1	23462	broad.mit.edu	37	chr8	80679499	80679499	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgggaagatgtagttggGgacatggaacctagagccga	15	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80679499	A	A	80679499	2	1	160	1	0	0	0	0	0	0	0	1	7145	1219	43	4		4	HEY1	8	80679499	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2903154	80679499	65684523	583	134411											
ZNF704	619279	broad.mit.edu	37	chr8	81577099	81577099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggtggtgggagctgagCggctcaacggcgtcatcaac	17	9	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81577099	A	A	81577099	3	1	160	1	0	0	0	0	1	0	0	0	18234	768	27	3	376	3	ZNF704	8	81577099	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	897600	81577099	64786923	584	134412											
NBN	4683	broad.mit.edu	37	chr8	90982841	90982841	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagtaattttttgaacacaTaagaatttgatttgggaaac	8	3	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90982841	C	C	90982841	1	2	160	0	1	0	0	0	0	0	0	0	10285	1421	49	5		5	NBN	8	90982841	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	9405742	90982841	55381181	585	134413											
SLC26A7	115111	broad.mit.edu	37	chr8	92307685	92307685	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttcacaatgtagcttcgaCagaatcccacaatttttatt	5	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92307685	G	G	92307685	1	3	160	0	1	0	0	0	0	0	0	0	14636	493	17	4		4	SLC26A7	8	92307685	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1324844	92307685	54056337	586	134414											
SLC26A7	115111	broad.mit.edu	37	chr8	92346639	92346639	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgaatgaacagtttaaaagGaaaattaaagttgttcttcc	7	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92346639	A	A	92346639	2	1	160	1	0	0	0	0	0	0	0	1	14636	1165	41	4		4	SLC26A7	8	92346639	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	38954	92346639	54017383	587	134415											
SLC26A7	115111	broad.mit.edu	37	chr8	92352516	92352516	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcttggttttctcatgGgtatttcacttagtctatgt	10	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92352516	A	A	92352516	1	1	160	0	1	0	0	0	0	0	0	0	14636	1247	43	4		4	SLC26A7	8	92352516	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	5877	92352516	54011506	588	134416											
RUNX1T1	862	broad.mit.edu	37	chr8	93026711	93026711	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagatgtagaaactattatAacaaaatacttgcgagaacg	7	6	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93026711	T	T	93026711	1	4	160	0	1	0	0	0	0	0	0	0	13858	377	13	5		5	RUNX1T1	8	93026711	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	674195	93026711	53337311	589	134417											
KCNS2	3788	broad.mit.edu	37	chr8	99440308	99440308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggctgcgctcgcacaCgctgctgcgcttccccgaga	14	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99440308	A	A	99440308	3	1	160	1	0	0	0	0	1	0	0	0	8159	536	19	3	103	3	KCNS2	8	99440308	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	6413597	99440308	46923714	590	134418											
VPS13B	157680	broad.mit.edu	37	chr8	100026338	100026339	+	Intron	INS	-	TTT	TTT													attttctttttctttctttcINStttttttttttttttttttt							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTT	100026339	TTT	TTT	100026338	6	5	160	0	1	1	1	0	0	0	0	0	17317	928	32	0		0	VPS13B	8	100026338	Intron	INS	-	TCGA-50-5933-01A-11D-1753-08	586030	100026338	46337684	591	134419											
SNX31	169166	broad.mit.edu	37	chr8	101601149	101601149	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcctcactgtattgaaatCtgagctctaagttctggttg	8	8	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101601149	A	A	101601149	3	1	160	1	0	0	0	0	1	0	0	0	15015	913	32	3	301	3	SNX31	8	101601149	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1574811	101601149	44762873	592	134420											
RIMS2	9699	broad.mit.edu	37	chr8	104987714	104987715	+	Frame_Shift_Ins	INS	-	A	A													ggactagatcatggtcacccINSagtgtccctcctccacaaag							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104987715	A	A	104987714	7	5	160	1	0	1	1	0	0	0	0	0	13479	581	21	0	3095	0	RIMS2	8	104987714	Frame_Shift_Ins	INS	-	TCGA-50-5933-01A-11D-1753-08	3386565	104987714	41376308	593	134421											
TM7SF4	81501	broad.mit.edu	37	chr8	105361289	105361289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtttcttggaaccagaCcctggcagtctctcttttca	7	13	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105361289	A	A	105361289	3	1	160	1	0	0	0	0	1	0	0	0	16099	507	18	3	511	3	TM7SF4	8	105361289	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	373575	105361289	41002733	594	134422											
ABRA	137735	broad.mit.edu	37	chr8	107782241	107782241	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattggtttaggagcttgagGtgagtcctgggtccctcccg	15	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107782241	A	A	107782241	3	1	160	1	0	0	0	0	1	0	0	0	100	1261	44	4	975	4	ABRA	8	107782241	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2420952	107782241	38581781	595	134423											
CSMD3	114788	broad.mit.edu	37	chr8	113241022	113241022	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatccaaatcctgcaaataTaagtgcaaaaaaaggcacaa	5	8	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113241022	G	G	113241022	3	3	160	1	0	0	0	0	1	0	0	0	3980	1406	49	5	204	5	CSMD3	8	113241022	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	5458781	113241022	33123000	596	134424											
CSMD3	114788	broad.mit.edu	37	chr8	113421123	113421123	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttaatcagtaactgatGcatggcagttctattaaagg	9	6	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113421123	T	T	113421123	1	4	160	0	1	0	0	0	0	0	0	0	3980	1334	46	3		3	CSMD3	8	113421123	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	180101	113421123	32942899	597	134425											
COL14A1	7373	broad.mit.edu	37	chr8	121208880	121208880	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttttttctagtaaaataCatttaagggaagagttgtaa	7	2	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121208880	T	T	121208880	1	4	160	0	1	0	0	0	0	0	0	0	3703	493	17	4		4	COL14A1	8	121208880	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	7787757	121208880	25155142	598	134426											
COL14A1	7373	broad.mit.edu	37	chr8	121267643	121267643	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcaagcatttgtgtatttGattctttgcacaccactgtg	8	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121267643	T	T	121267643	1	4	160	0	1	0	0	0	0	0	0	0	3703	1305	45	3		3	COL14A1	8	121267643	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	58763	121267643	25096379	599	134427											
KLHL38	340359	broad.mit.edu	37	chr8	124664263	124664263	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttgctgtacagtaggaCgtccctggtggtctgctggc	14	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124664263	A	A	124664263	3	1	160	1	0	0	0	0	1	0	0	0	8461	536	19	3	853	3	KLHL38	8	124664263	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	3396620	124664263	21699759	600	134428											
FER1L6	654463	broad.mit.edu	37	chr8	124975546	124975546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacactgaagcactgcaGgaggagccttctcaccagga	13	11	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124975546	T	T	124975546	3	4	160	1	0	0	0	0	1	0	0	0	5872	991	35	2	111	2	FER1L6	8	124975546	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	311283	124975546	21388476	601	134429											
FER1L6	654463	broad.mit.edu	37	chr8	125023004	125023004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattgggaagctggtgggGgaagggatttttaaaatcca	15	3	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125023004	T	T	125023004	1	4	160	0	1	0	0	0	0	0	0	0	5872	1247	43	2		2	FER1L6	8	125023004	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	47458	125023004	21341018	602	134430											
KCNQ3	3786	broad.mit.edu	37	chr8	133182528	133182528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagacacgaatacagacCgcaggagagatggctggtca	12	11	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133182528	A	A	133182528	1	1	160	0	1	0	0	0	0	0	0	0	8154	667	23	1		1	KCNQ3	8	133182528	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	8159524	133182528	13181494	603	134431											
WISP1	8840	broad.mit.edu	37	chr8	134225226	134225226	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccccaccccgctgcccGctgggggtcagcctcatcac	9	21	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134225226	T	T	134225226	2	4	160	1	0	0	0	0	0	0	0	1	17499	1074	38	3		3	WISP1	8	134225226	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1042698	134225226	12138796	604	134432											
FAM135B	51059	broad.mit.edu	37	chr8	139163668	139163668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagagtaaaggtctctGcagaagtcagatgggacccc	12	10	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139163668	T	T	139163668	3	4	160	1	0	0	0	0	1	0	0	0	5495	1319	46	3	1202	3	FAM135B	8	139163668	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4938442	139163668	7200354	605	134433											
FAM135B	51059	broad.mit.edu	37	chr8	139278125	139278125	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaacccatgaactccaatActgtcctgtacctgcagccc	7	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139278125	G	G	139278125	1	3	160	0	1	0	0	0	0	0	0	0	5495	406	14	5		5	FAM135B	8	139278125	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	114457	139278125	7085897	606	134434											
COL22A1	169044	broad.mit.edu	37	chr8	139642888	139642888	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcaaacacctggggttccaGaaaggctaaagacagattaa	11	8	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139642888	T	T	139642888	1	4	160	0	1	0	0	0	0	0	0	0	3713	957	33	3		3	COL22A1	8	139642888	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	364763	139642888	6721134	607	134435											
EXOSC4	54512	broad.mit.edu	37	chr8	145135259	145135259	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgtgctcagctggcttcGtggacggcacagccctggcg	16	13	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145135259	A	A	145135259	3	1	160	1	0	0	0	0	1	0	0	0	5359	1145	40	4	503	4	EXOSC4	8	145135259	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5492371	145135259	1228763	608	134436											
ARHGAP39	80728	broad.mit.edu	37	chr8	145773606	145773606	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctttcggggctgggccagCagcggggagctgctccctgg	19	12	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145773606	T	T	145773606	2	4	160	1	0	0	0	0	0	0	0	1	886	697	25	4		4	ARHGAP39	8	145773606	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	638347	145773606	590416	609	134437											
RLN2	6019	broad.mit.edu	37	chr9	5304603	5304603	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcctggtctctcctggaGgtcgggacgttgcagccttt	15	11	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5304603	T	T	5304603	1	4	160	0	1	0	0	0	0	0	0	0	13503	1015	35	2		2	RLN2	9	5304603	5'Flank	SNP	G	TCGA-50-5933-01A-11D-1753-08		5304603	135908828	610	134438											
IL33	90865	broad.mit.edu	37	chr9	6252962	6252962	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagttatgagatatatgTtgaagacttgaaaaaagatg	10	1	0	6			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6252962	A	A	6252962	3	1	160	1	0	0	0	0	1	0	0	0	7763	1725	60	5	454	5	IL33	9	6252962	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	948359	6252962	134960469	611	134439											
TPD52L3	89882	broad.mit.edu	37	chr9	6328769	6328769	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaagagagacgctgtggGgaactcaagaggaagttagg	16	6	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6328769	T	T	6328769	2	4	160	1	0	0	0	0	0	0	0	1	16524	1219	43	2		2	TPD52L3	9	6328769	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	75807	6328769	134884662	612	134440											
PTPRD	5789	broad.mit.edu	37	chr9	8319768	8319768	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgagagagtatggagtccGggaggtccaggctagcaaaa	16	6	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8319768	T	T	8319768	1	4	160	0	1	0	0	0	0	0	0	0	12907	1131	39	1		1	PTPRD	9	8319768	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1990999	8319768	132893663	613	134441											
BNC2	54796	broad.mit.edu	37	chr9	16552658	16552658	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagccgcacaggcactgctTgtgtcccatagagcatcagg	11	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16552658	A	A	16552658	3	1	160	1	0	0	0	0	1	0	0	0	1481	1812	63	5	2772	5	BNC2	9	16552658	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	8232890	16552658	124660773	614	134442											
IFNA14	3448	broad.mit.edu	37	chr9	21239471	21239471	+	Missense_Mutation	SNP	A	G	G													aagggctgtatttcttctccAtcagataaagagtgattctt							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21239471	G	G	21239471	3	3	160	1	0	0	0	0	1	0	0	0	7604	217	8	5	109	5	IFNA14	9	21239471	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	4686813	21239471	119973960	615	134443	576	2									
IFNA14	3448	broad.mit.edu	37	chr9	21239473	21239473	+	Silent	SNP	C	T	T													gggctgtatttcttctccatCagataaagagtgattctttg					rs150969341	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21239473	T	T	21239473	2	4	160	1	0	0	0	0	0	0	0	1	7604	813	29	4		4	IFNA14	9	21239473	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2	21239473	119973958	616	134444	576	2									
NFX1	4799	broad.mit.edu	37	chr9	33307152	33307152	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaagttgagaatgtggttGaagtttgtaccattgactct	10	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33307152	T	T	33307152	1	4	160	0	1	0	0	0	0	0	0	0	10482	1305	45	3		3	NFX1	9	33307152	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	12067679	33307152	107906279	617	134445											
FAM75A6	389730	broad.mit.edu	37	chr9	43625106	43625106	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcactgctgctgtacacaCatgatctgttttttactgtt	7	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43625106	T	T	43625106	3	4	160	1	0	0	0	0	1	0	0	0	5674	478	17	4	454	4	FAM75A6	9	43625106	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	10317954	43625106	97588325	618	134446											
APBA1	320	broad.mit.edu	37	chr9	72055683	72055683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcctgcttcagctcttgCacagtgcgctgcacccactg	9	15	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72055683	A	A	72055683	1	1	160	0	1	0	0	0	0	0	0	0	758	725	25	3		3	APBA1	9	72055683	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	28430577	72055683	69157748	619	134447											
FOXB2	442425	broad.mit.edu	37	chr9	79634849	79634849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgctgcaccccgactgCggggacatgttcgagaacgg	16	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79634849	T	T	79634849	2	4	160	1	0	0	0	0	0	0	0	1	6051	776	27	4		4	FOXB2	9	79634849	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	7579166	79634849	61578582	620	134448											
UBQLN1	29979	broad.mit.edu	37	chr9	86293365	86293365	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtggatcacctgctcttgTgcagcactcagcattggttc	10	12	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86293365	A	A	86293365	2	1	160	1	0	0	0	0	0	0	0	1	17022	1683	59	5		5	UBQLN1	9	86293365	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	6658516	86293365	54920066	621	134449											
SECISBP2	79048	broad.mit.edu	37	chr9	91940394	91940394	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagcttcaacttttccacctCagtatttatcttctgagata	5	10	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91940394	T	T	91940394	4	4	160	1	0	0	0	0	0	1	0	0	14119	827	29	4	245	4	SECISBP2	9	91940394	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	5647029	91940394	49273037	622	134450											
IARS	3376	broad.mit.edu	37	chr9	95004351	95004351	+	Intron	DEL	G	-	-													gctgtgccgatctctactgtGggacagaatatcaacacgtg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95004351	-	-	95004351	6	5	160	0	1	1	0	1	0	0	0	0	7543	1363	47	0		0	IARS	9	95004351	Intron	DEL	G	TCGA-50-5933-01A-11D-1753-08	3063957	95004351	46209080	623	134451											
HIATL1	84641	broad.mit.edu	37	chr9	97177371	97177371	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatttttacacatttttttCtataccattttaagataata	1	6	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97177371	A	A	97177371	1	1	160	0	1	0	0	0	0	0	0	0	7165	928	32	3		3	HIATL1	9	97177371	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2173020	97177371	44036060	624	134452											
KIAA1529	57653	broad.mit.edu	37	chr9	100090445	100090445	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggtatggagagggtgatGatacacccagccactcatga	12	9	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100090445	T	T	100090445	1	4	160	0	1	0	0	0	0	0	0	0	8310	1305	45	3		3	KIAA1529	9	100090445	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2913074	100090445	41122986	625	134453											
ACTL7A	10881	broad.mit.edu	37	chr9	111625427	111625427	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgggcatcgtggaggacatCaagaagaaatgctgctttgt	13	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111625427	A	A	111625427	2	1	160	1	0	0	0	0	0	0	0	1	200	816	29	3		3	ACTL7A	9	111625427	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	11534982	111625427	29588004	626	134454											
EPB41L4B	54566	broad.mit.edu	37	chr9	111938752	111938752	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggaaaggcctgtacgtgtCacaaacacaatgaacctaga	9	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111938752	A	A	111938752	1	1	160	0	1	0	0	0	0	0	0	0	5198	841	29	3		3	EPB41L4B	9	111938752	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	313325	111938752	29274679	627	134455											
EPB41L4B	54566	broad.mit.edu	37	chr9	111970112	111970112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactggaccctgactgacaCagcatctcagtcctacggtg	10	13	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111970112	A	A	111970112	1	1	160	0	1	0	0	0	0	0	0	0	5198	493	17	3		3	EPB41L4B	9	111970112	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	31360	111970112	29243319	628	134456											
SVEP1	79987	broad.mit.edu	37	chr9	113312459	113312459	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctcttcttacgtaaggCagtacttgcaaagatcatta	7	9	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113312459	T	T	113312459	1	4	160	0	1	0	0	0	0	0	0	0	15538	725	25	4		4	SVEP1	9	113312459	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1342347	113312459	27900972	629	134457											
ROD1	9991	broad.mit.edu	37	chr9	115060049	115060049	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatataagcaaaataagagCattgtaaaaaaacaatttga	6	3	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115060049	T	T	115060049	1	4	160	0	1	0	0	0	0	0	0	0	13630	725	25	4		4	ROD1	9	115060049	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1747590	115060049	26153382	630	134458											
ASTN2	23245	broad.mit.edu	37	chr9	119737477	119737477	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctatgcagagtactggagatGattccctacctgacatctgc	9	11	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119737477	C	C	119737477	1	2	160	0	1	0	0	0	0	0	0	0	1069	1305	45	4		4	ASTN2	9	119737477	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	4677428	119737477	21475954	631	134459											
TLR4	7099	broad.mit.edu	37	chr9	120475175	120475175	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggctggtttagaagtccatCgtttggttctgggagaattt	13	5	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120475175	T	T	120475175	3	4	160	1	0	0	0	0	1	0	0	0	16076	884	31	4	779	4	TLR4	9	120475175	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	737698	120475175	20738256	632	134460											
TLR4	7099	broad.mit.edu	37	chr9	120476002	120476002	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatatgagccacaacaacttCttttcattggatacgtttcc	5	10	2	1	rs34953464		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476002	A	A	120476002	3	1	160	1	0	0	0	0	1	0	0	0	16076	912	32	3	1606	3	TLR4	9	120476002	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	827	120476002	20737429	633	134461											
NUP214	8021	broad.mit.edu	37	chr9	134103703	134103703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggcactgcagctgccaGcgcaggaggattcgggtaag	17	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134103703	T	T	134103703	3	4	160	1	0	0	0	0	1	0	0	0	10857	971	34	3	6189	3	NUP214	9	134103703	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	13627701	134103703	7109728	634	134462											
REXO4	57109	broad.mit.edu	37	chr9	136276070	136276070	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtaacacccacggagcaGgggcaggctgagtccccagg	15	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136276070	A	A	136276070	1	1	160	0	1	0	0	0	0	0	0	0	13351	1015	35	4		4	REXO4	9	136276070	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2172367	136276070	4937361	635	134463											
TMEM8C	389827	broad.mit.edu	37	chr9	136384029	136384029	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgatgaggatggctgtgccGatggggcccgagtacacccc	15	11	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136384029	T	T	136384029	2	4	160	1	0	0	0	0	0	0	0	1	16339	1048	37	3		3	TMEM8C	9	136384029	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	107959	136384029	4829402	636	134464											
COL5A1	1289	broad.mit.edu	37	chr9	137630626	137630626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggaaccatgggtcccaCtggccaagtcggggaccctg	13	14	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137630626	A	A	137630626	3	1	160	1	0	0	0	0	1	0	0	0	3728	565	20	3	1508	3	COL5A1	9	137630626	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1246597	137630626	3582805	637	134465											
ENTPD2	954	broad.mit.edu	37	chr9	139944560	139944560	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcccttacccacgacaAagttcccagccacccgccta	6	20	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139944560	G	G	139944560	1	3	160	0	1	0	0	0	0	0	0	0	5181	29	1	5		5	ENTPD2	9	139944560	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2313934	139944560	1268871	638	134466											
DIP2C	22982	broad.mit.edu	37	chr10	465069	465069	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccgggaccccgtggaaccCtgcggtctctccacctgtat	11	16	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	465069	G	G	465069	3	3	160	1	0	0	0	0	1	0	0	0	4569	680	24	4	4123	4	DIP2C	10	465069	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08		465069	135069678	639	134467											
SFMBT2	57713	broad.mit.edu	37	chr10	7247935	7247935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtacaaacagatcttacCaacaaagaaatagaaggaca	8	7	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7247935	A	A	7247935	1	1	160	0	1	0	0	0	0	0	0	0	14271	609	21	2		2	SFMBT2	10	7247935	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	6782866	7247935	128286812	640	134468											
CAMK1D	57118	broad.mit.edu	37	chr10	12870807	12870807	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtagtttcatttcttcttCgtcgggggtctcaggagttg	12	8	4	0	rs148446769		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12870807	T	T	12870807	3	4	160	1	0	0	0	0	1	0	0	0	2623	893	31	4	1156	4	CAMK1D	10	12870807	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	5622872	12870807	122663940	641	134469											
FAM107B	83641	broad.mit.edu	37	chr10	14563114	14563114	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaatattctccaggggcTtttgccctgagattgagaag	11	8	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14563114	C	C	14563114	1	2	160	0	1	0	0	0	0	0	0	0	5436	1624	56	5		5	FAM107B	10	14563114	3'UTR	SNP	T	TCGA-50-5933-01A-11D-1753-08	1692307	14563114	120971633	642	134470											
MEIG1	644890	broad.mit.edu	37	chr10	15008412	15008412	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtcactattacattatcCattaatgttgttttaacatc	3	7	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15008412	A	A	15008412	1	1	160	0	1	0	0	0	0	0	0	0	9559	609	21	2		2	MEIG1	10	15008412	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	445298	15008412	120526335	643	134471											
ITGA8	8516	broad.mit.edu	37	chr10	15559257	15559257	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccacactataaagggaaaGatgggctataaaatcacgtc	8	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15559257	A	A	15559257	1	1	160	0	1	0	0	0	0	0	0	0	7952	957	33	4		4	ITGA8	10	15559257	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	550845	15559257	119975490	644	134472											
ITGA8	8516	broad.mit.edu	37	chr10	15760929	15760929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggagaaagtcactctttGggcgccacaaaaccgtgcgc	12	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15760929	T	T	15760929	1	4	160	0	1	0	0	0	0	0	0	0	7952	1363	47	2		2	ITGA8	10	15760929	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	201672	15760929	119773818	645	134473											
VIM	7431	broad.mit.edu	37	chr10	17277910	17277910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagcattttatttccctttAggaaaaacgtcagctgcttg	7	8	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17277910	T	T	17277910	1	4	160	0	1	0	0	0	0	0	0	0	17293	435	15	5		5	VIM	10	17277910	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1516981	17277910	118256837	646	134474											
ARMC4	55130	broad.mit.edu	37	chr10	28228927	28228927	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctttgattgcagcccGgtagttttcctaggaataaa	9	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28228927	A	A	28228927	3	1	160	1	0	0	0	0	1	0	0	0	957	1115	39	4	1166	4	ARMC4	10	28228927	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	10951017	28228927	107305820	647	134475											
BAMBI	25805	broad.mit.edu	37	chr10	28970327	28970327	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccatggctgcctggactctCttgcaagcacgacagacatc	9	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28970327	T	T	28970327	3	4	160	1	0	0	0	0	1	0	0	0	1311	913	32	4	223	4	BAMBI	10	28970327	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	741400	28970327	106564420	648	134476											
NRP1	8829	broad.mit.edu	37	chr10	33475483	33475483	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacttttatctctcttctttCaagtctcactaatcaaaagc	2	12	6	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33475483	G	G	33475483	1	3	160	0	1	0	0	0	0	0	0	0	10755	841	29	4		4	NRP1	10	33475483	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4505156	33475483	102059264	649	134477											
BMS1	9790	broad.mit.edu	37	chr10	43318582	43318582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagggaatgtttaattctgCcttggaagtggccaaatttg	12	5	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43318582	T	T	43318582	3	4	160	1	0	0	0	0	1	0	0	0	1478	739	26	4	3223	4	BMS1	10	43318582	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	9843099	43318582	92216165	650	134478											
ZNF22	7570	broad.mit.edu	37	chr10	45498928	45498928	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaagtggggcatgactattCgatttgactcaagcttcagt	11	7	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45498928	T	T	45498928	4	4	160	1	0	0	0	0	0	1	0	0	17900	876	31	4	114	4	ZNF22	10	45498928	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2180346	45498928	90035819	651	134479											
CHAT	1103	broad.mit.edu	37	chr10	50828428	50828428	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacctggggcttagcatatAtttgtggaatgaatgaatta	10	4	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50828428	G	G	50828428	1	3	160	0	1	0	0	0	0	0	0	0	3344	464	16	5		5	CHAT	10	50828428	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	5329500	50828428	84706319	652	134480											
OGDHL	55753	broad.mit.edu	37	chr10	50944420	50944420	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgctccaggcgcgtgaTggccactttctcctccaggt	10	16	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50944420	C	C	50944420	3	2	160	1	0	0	0	0	1	0	0	0	10935	1464	51	5	307	5	OGDHL	10	50944420	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	115992	50944420	84590327	653	134481											
PCDH15	65217	broad.mit.edu	37	chr10	55569195	55569195	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattctggctctcttccatgTtgtgtatgtaggctcagctg	10	9	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55569195	A	A	55569195	3	1	160	1	0	0	0	0	1	0	0	0	11605	1725	60	5	1301	5	PCDH15	10	55569195	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	4624775	55569195	79965552	654	134482											
PCDH15	65217	broad.mit.edu	37	chr10	55600099	55600099	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttaaaaagctcatttctatCgatggctctgttggtttggg	10	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55600099	T	T	55600099	3	4	160	1	0	0	0	0	1	0	0	0	11605	884	31	4	3542	4	PCDH15	10	55600099	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	30904	55600099	79934648	655	134483											
PCDH15	65217	broad.mit.edu	37	chr10	55782676	55782676	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgaaggatggtagtcccAgctggcaaattctcttcaac	9	9	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55782676	T	T	55782676	2	4	160	1	0	0	0	0	0	0	0	1	11605	175	7	5		5	PCDH15	10	55782676	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	182577	55782676	79752071	656	134484											
IPMK	253430	broad.mit.edu	37	chr10	59956367	59956367	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attaagctgcttctggttttCaaaccactgcagaattttct	6	9	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59956367	G	G	59956367	3	3	160	1	0	0	0	0	1	0	0	0	7862	835	29	4	533	4	IPMK	10	59956367	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4173691	59956367	75578380	657	134485											
PBLD	64081	broad.mit.edu	37	chr10	70048269	70048269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttcagccacaccaaccCacggtgcaaaatatcttgag	8	13	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70048269	A	A	70048269	3	1	160	1	0	0	0	0	1	0	0	0	11583	595	21	2	305	2	PBLD	10	70048269	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	10091902	70048269	65486478	658	134486											
CDH23	64072	broad.mit.edu	37	chr10	73498295	73498295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagaatgacaacagcccccGgtttgacttcacctccgact	8	15	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73498295	A	A	73498295	3	1	160	1	0	0	0	0	1	0	0	0	3138	1116	39	4	4729	4	CDH23	10	73498295	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3450026	73498295	62036452	659	134487											
DLG5	9231	broad.mit.edu	37	chr10	79576496	79576496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatgccggtgtgaactccCatctcacttccccaacagcc	7	16	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79576496	A	A	79576496	1	1	160	0	1	0	0	0	0	0	0	0	4598	609	21	2		2	DLG5	10	79576496	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	6078201	79576496	55958251	660	134488											
DLG5	9231	broad.mit.edu	37	chr10	79601669	79601669	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccatctcctcattggcCgccttcttctcagatgtgct	7	16	4	1	rs138228867		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79601669	A	A	79601669	2	1	160	1	0	0	0	0	0	0	0	1	4598	639	23	1		1	DLG5	10	79601669	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	25173	79601669	55933078	661	134489											
BMPR1A	657	broad.mit.edu	37	chr10	88615066	88615068	+	Intron	DEL	CTC	-	-													gtcttccacccaatcaaagtCtccttcaaaactttaagtaa							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88615068	-	-	88615066	6	5	160	0	1	1	0	1	0	0	0	0	1475	928	32	0		0	BMPR1A	10	88615066	Intron	DEL	CTC	TCGA-50-5933-01A-11D-1753-08	9013397	88615066	46919681	662	134490											
LIPF	8513	broad.mit.edu	37	chr10	90438386	90438386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgggcaatggatgcccCtcaagaagtttacaatgaca	9	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90438386	A	A	90438386	3	1	160	1	0	0	0	0	1	0	0	0	8895	681	24	2	1179	2	LIPF	10	90438386	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1823320	90438386	45096361	663	134491											
LIPN	643418	broad.mit.edu	37	chr10	90526198	90526198	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttttctcagagtcttacaGgagttcacctttatgttgga	9	7	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90526198	A	A	90526198	1	1	160	0	1	0	0	0	0	0	0	0	8902	1015	35	4		4	LIPN	10	90526198	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	87812	90526198	45008549	664	134492											
CH25H	9023	broad.mit.edu	37	chr10	90966469	90966469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggtgagcgggtggcacCcgagcagtgtgacgttcatc	18	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90966469	A	A	90966469	3	1	160	1	0	0	0	0	1	0	0	0	3337	623	22	2	241	2	CH25H	10	90966469	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	440271	90966469	44568278	665	134493											
PDE6C	5146	broad.mit.edu	37	chr10	95389010	95389010	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatttgtctcctcttgcctTccagatctgtaacatgatga	6	12	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95389010	A	A	95389010	1	1	160	0	1	0	0	0	0	0	0	0	11741	1798	62	5		5	PDE6C	10	95389010	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	4422541	95389010	40145737	666	134494											
PLCE1	51196	broad.mit.edu	37	chr10	95993841	95993841	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttttaaaaatgtggcagttCatggaccagtctgatattga	10	5	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95993841	A	A	95993841	3	1	160	1	0	0	0	0	1	0	0	0	12129	825	29	3	2290	3	PLCE1	10	95993841	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	604831	95993841	39540906	667	134495											
CYP2C19	1557	broad.mit.edu	37	chr10	96609917	96609917	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtggtacagttactcttTgtacatgatcaagagcactg	10	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96609917	C	C	96609917	1	2	160	0	1	0	0	0	0	0	0	0	4199	1827	63	5		5	CYP2C19	10	96609917	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	616076	96609917	38924830	668	134496											
CYP2C19	1557	broad.mit.edu	37	chr10	96612442	96612442	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagacagtgtttgtcactctCacagttacacatgaggagta	10	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96612442	A	A	96612442	1	1	160	0	1	0	0	0	0	0	0	0	4199	841	29	3		3	CYP2C19	10	96612442	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2525	96612442	38922305	669	134497											
SORBS1	10580	broad.mit.edu	37	chr10	97144023	97144023	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatgagtatctgggagaGtacagatctgaatcatcatc	10	6	4	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97144023	A	A	97144023	2	1	160	1	0	0	0	0	0	0	0	1	15041	1024	36	4		4	SORBS1	10	97144023	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	531581	97144023	38390724	670	134498											
PIK3AP1	118788	broad.mit.edu	37	chr10	98412421	98412421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcaaataagcaatgaagCcctatgtcatcacattcaca	5	10	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98412421	A	A	98412421	1	1	160	0	1	0	0	0	0	0	0	0	12003	754	26	3		3	PIK3AP1	10	98412421	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1268398	98412421	37122326	671	134499											
HPSE2	60495	broad.mit.edu	37	chr10	100995424	100995424	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctctgtctacaggcaaggGtctcctgtctccagcctggg	12	13	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100995424	C	C	100995424	3	2	160	1	0	0	0	0	1	0	0	0	7412	1261	44	4	1728	4	HPSE2	10	100995424	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2583003	100995424	34539323	672	134500											
SEC31B	25956	broad.mit.edu	37	chr10	102249088	102249088	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgagggaagaatccctTgtagctcaggggtgaggctc	16	8	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102249088	A	A	102249088	3	1	160	1	0	0	0	0	1	0	0	0	14112	1812	63	5	463	5	SEC31B	10	102249088	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	1253664	102249088	33285659	673	134501											
SUFU	51684	broad.mit.edu	37	chr10	104377247	104377247	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttccttgcccacccctcctCttctcccttggcagctcttg	5	20	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104377247	T	T	104377247	1	4	160	0	1	0	0	0	0	0	0	0	15486	928	32	4		4	SUFU	10	104377247	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2128159	104377247	31157500	674	134502											
SORCS1	114815	broad.mit.edu	37	chr10	108489838	108489838	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctggcctcaagatgcaCaaggtctggttctttatttg	10	8	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108489838	A	A	108489838	3	1	160	1	0	0	0	0	1	0	0	0	15044	478	17	3	2830	3	SORCS1	10	108489838	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4112591	108489838	27044909	675	134503											
NRAP	4892	broad.mit.edu	37	chr10	115374006	115374006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatcatcttccaagctccggGaaccaagcatctgtcctttc	6	14	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115374006	T	T	115374006	3	4	160	1	0	0	0	0	1	0	0	0	10733	1174	41	3	2012	3	NRAP	10	115374006	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	6884168	115374006	20160741	676	134504											
C10orf81	79949	broad.mit.edu	37	chr10	115531801	115531801	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcagaagccactcaagatGtgaaggaagagaatcattat	9	6	3	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115531801	A	A	115531801	3	1	160	1	0	0	0	0	1	0	0	0	1630	1377	48	4	651	4	C10orf81	10	115531801	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	157795	115531801	20002946	677	134505											
C10orf118	55088	broad.mit.edu	37	chr10	115922587	115922587	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttatttttgaaataaatttCttggtgcagtctgtatcata	6	4	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115922587	A	A	115922587	3	1	160	1	0	0	0	0	1	0	0	0	1598	912	32	3	2315	3	C10orf118	10	115922587	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	390786	115922587	19612160	678	134506											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118196236	118196236	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaggaaaagaagtttgCtatgaaaggttagggtgttt	14	3	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118196236	T	T	118196236	2	4	160	1	0	0	0	0	0	0	0	1	12247	805	28	4		4	PNLIPRP3	10	118196236	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	2273649	118196236	17338511	679	134507											
TACC2	10579	broad.mit.edu	37	chr10	123844295	123844295	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttgctgacgtccccagaTcaaccccgcgggccggcgtg	14	16	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123844295	C	C	123844295	2	2	160	1	0	0	0	0	0	0	0	1	15621	1432	50	5		5	TACC2	10	123844295	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	5648059	123844295	11690452	680	134508											
DMBT1	1755	broad.mit.edu	37	chr10	124328213	124328213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgatgacagctgggacgCccaggatgcagatgttgtct	15	8	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124328213	A	A	124328213	1	1	160	0	1	0	0	0	0	0	0	0	4617	754	26	3		3	DMBT1	10	124328213	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	483918	124328213	11206534	681	134509											
CUZD1	50624	broad.mit.edu	37	chr10	124598650	124598650	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaaatacaggaacatagtCgtttttactgcagacttgcc	7	9	1	1	rs143659470		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124598650	T	T	124598650	3	4	160	1	0	0	0	0	1	0	0	0	4099	884	31	4	1520	4	CUZD1	10	124598650	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	270437	124598650	10936097	682	134510											
ADAM12	8038	broad.mit.edu	37	chr10	127797287	127797287	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagaatatcaatcacgtttCatcttcctggcttctggaaa	6	10	5	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127797287	T	T	127797287	1	4	160	0	1	0	0	0	0	0	0	0	236	841	29	4		4	ADAM12	10	127797287	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3198637	127797287	7737460	683	134511											
FAM196A	642938	broad.mit.edu	37	chr10	128974033	128974033	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaggccgagtggagttttgGagcgcagcttctccatagct	15	9	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128974033	C	C	128974033	2	2	160	1	0	0	0	0	0	0	0	1	5575	1161	41	4		4	FAM196A	10	128974033	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1176746	128974033	6560714	684	134512											
DPYSL4	10570	broad.mit.edu	37	chr10	134013942	134013942	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagaactgggccaaggcCgcagccttcgtcacatcacc	10	15	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134013942	A	A	134013942	2	1	160	1	0	0	0	0	0	0	0	1	4789	639	23	1		1	DPYSL4	10	134013942	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	5039909	134013942	1520805	685	134513											
AP2A2	161	broad.mit.edu	37	chr11	985518	985518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccaagtcgaagaaggtcCagcactccaacgcgaagaat	10	13	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	985518	A	A	985518	3	1	160	1	0	0	0	0	1	0	0	0	742	595	21	2	928	2	AP2A2	11	985518	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08		985518	134020998	686	134514											
MUC5B	727897	broad.mit.edu	37	chr11	1271325	1271325	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccactacaactgcagccacTggccccacggccaccccgtc	8	21	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1271325	A	A	1271325	2	1	160	1	0	0	0	0	0	0	0	1	10073	1567	55	5		5	MUC5B	11	1271325	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	285807	1271325	133735191	687	134515											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651136	1651136	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtggctccggctgtggGggctgtggctccggctgtgg	21	11	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1651136	A	A	1651136	2	1	160	1	0	0	0	0	0	0	0	1	8636	1219	43	4		4	KRTAP5-5	11	1651136	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	379811	1651136	133355380	688	134516											
OR52K2	119774	broad.mit.edu	37	chr11	4470602	4470602	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatatcaccttaacacatccAactgccttcttgttggtggg	7	11	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4470602	T	T	4470602	2	4	160	1	0	0	0	0	0	0	0	1	11218	117	5	5		5	OR52K2	11	4470602	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	2819466	4470602	130535914	689	134517											
OR51A7	119687	broad.mit.edu	37	chr11	4929527	4929527	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggaagttgcttaatgtaTgtgggagataagaacttgaa	14	2	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4929527	A	A	4929527	3	1	160	1	0	0	0	0	1	0	0	0	11182	1464	51	5	930	5	OR51A7	11	4929527	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	458925	4929527	130076989	690	134518											
OR51L1	119682	broad.mit.edu	37	chr11	5021145	5021145	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctccacaagtttgtcctAaggaggaggttttaagtaac	9	7	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5021145	G	G	5021145	2	3	160	1	0	0	0	0	0	0	0	1	11196	349	13	5		5	OR51L1	11	5021145	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	91618	5021145	129985371	691	134519											
OR52A5	390054	broad.mit.edu	37	chr11	5152927	5152927	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagtcactaacgatcaagTtacttttttgaagaaaaaca	7	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5152927	A	A	5152927	3	1	160	1	0	0	0	0	1	0	0	0	11204	1725	60	5	7	5	OR52A5	11	5152927	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	131782	5152927	129853589	692	134520											
OR51I1	390063	broad.mit.edu	37	chr11	5462206	5462206	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagatctggatggagacagTaggagtgatgcaaaacattg	14	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5462206	A	A	5462206	3	1	160	1	0	0	0	0	1	0	0	0	11194	1638	57	5	409	5	OR51I1	11	5462206	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	309279	5462206	129544310	693	134521											
OR56A3	390083	broad.mit.edu	37	chr11	5969356	5969356	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcagcaccatccttctGgtttttgtcctcacacatgt	5	13	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5969356	A	A	5969356	2	1	160	1	0	0	0	0	0	0	0	1	11228	1335	47	4		4	OR56A3	11	5969356	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	507150	5969356	129037160	694	134522											
SMPD1	6609	broad.mit.edu	37	chr11	6414414	6414414	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaccaggattggaacaAgtgttgacctctcatgttta	12	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6414414	C	C	6414414	1	2	160	0	1	0	0	0	0	0	0	0	14918	87	3	5		5	SMPD1	11	6414414	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	445058	6414414	128592102	695	134523											
ARFIP2	23647	broad.mit.edu	37	chr11	6499431	6499431	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgtagccaaattcctcctGagggcagaagggaggaacag	13	8	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6499431	A	A	6499431	1	1	160	0	1	0	0	0	0	0	0	0	857	1305	45	4		4	ARFIP2	11	6499431	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	85017	6499431	128507085	696	134524											
DCHS1	8642	broad.mit.edu	37	chr11	6652653	6652653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtacctgtgggaacacaaCtcacctagtgagtctctttc	9	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6652653	A	A	6652653	1	1	160	0	1	0	0	0	0	0	0	0	4320	580	20	3		3	DCHS1	11	6652653	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	153222	6652653	128353863	697	134525											
ZNF214	7761	broad.mit.edu	37	chr11	7021692	7021692	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataagacttctctcctgtgtGtactaactgatgaattcgaa	7	8	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7021692	A	A	7021692	3	1	160	1	0	0	0	0	1	0	0	0	17896	1377	48	4	602	4	ZNF214	11	7021692	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	369039	7021692	127984824	698	134526											
TPH1	7166	broad.mit.edu	37	chr11	18047940	18047941	+	Intron	INS	-	A	A													ttatttaatcctcgcacaccINSaaaaaaaaaaaaaaaaaaaa					rs66864134		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18047941	A	A	18047940	6	5	160	0	1	1	1	0	0	0	0	0	16525	609	21	0		0	TPH1	11	18047940	Intron	INS	-	TCGA-50-5933-01A-11D-1753-08	11026248	18047940	116958576	699	134527											
TPH1	7166	broad.mit.edu	37	chr11	18050811	18050811	+	Frame_Shift_Del	DEL	A	-	-													gtttttgagatactctctgcAagcatgggttgggtagagtt							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18050811	-	-	18050811	7	5	160	1	0	1	0	1	0	0	0	0	16525	130	5	0	790	0	TPH1	11	18050811	Frame_Shift_Del	DEL	A	TCGA-50-5933-01A-11D-1753-08	2871	18050811	116955705	700	134528											
IGSF22	283284	broad.mit.edu	37	chr11	18738526	18738526	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttcacaggcttcatctctCccaggaacttcagtggctca	7	15	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18738526	T	T	18738526	3	4	160	1	0	0	0	0	1	0	0	0	7670	855	30	4	3041	4	IGSF22	11	18738526	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	687715	18738526	116267990	701	134529											
CCDC73	493860	broad.mit.edu	37	chr11	32779857	32779857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgggctttcctacaataCagcctctaacaaaactaggc	6	12	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32779857	A	A	32779857	1	1	160	0	1	0	0	0	0	0	0	0	2874	493	17	3		3	CCDC73	11	32779857	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	14041331	32779857	102226659	702	134530											
SLC1A2	6506	broad.mit.edu	37	chr11	35395908	35395908	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatttaaatagcgatgtgTtgttggagaattacagagac	11	3	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35395908	C	C	35395908	1	2	160	0	1	0	0	0	0	0	0	0	14545	1740	60	5		5	SLC1A2	11	35395908	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	2616051	35395908	99610608	703	134531											
LRRC4C	57689	broad.mit.edu	37	chr11	40136810	40136810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatgtgaagtaattctggtCgagctctccaatgtacctcc	9	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40136810	A	A	40136810	3	1	160	1	0	0	0	0	1	0	0	0	9095	884	31	3	893	3	LRRC4C	11	40136810	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	4740902	40136810	94869706	704	134532											
F2	2147	broad.mit.edu	37	chr11	46740807	46740807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcgcacgtccgaggcttgCagctgcctggctgcctggcc	15	15	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46740807	A	A	46740807	3	1	160	1	0	0	0	0	1	0	0	0	5385	711	25	3	24	3	F2	11	46740807	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	6603997	46740807	88265709	705	134533											
OR4C6	219432	broad.mit.edu	37	chr11	55433224	55433224	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggacacccacatcctgggCctcttagttaccctcaacag	7	16	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55433224	A	A	55433224	2	1	160	1	0	0	0	0	0	0	0	1	11146	726	26	3		3	OR4C6	11	55433224	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	8692417	55433224	79573292	706	134534											
OR4C6	219432	broad.mit.edu	37	chr11	55433583	55433583	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggaaataactgcaatgctGagaacatcatgtatttccca	8	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55433583	A	A	55433583	1	1	160	0	1	0	0	0	0	0	0	0	11146	1305	45	4		4	OR4C6	11	55433583	3'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	359	55433583	79572933	707	134535											
OR5D13	390142	broad.mit.edu	37	chr11	55541472	55541472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgaccactctgtaattGtttctgcctcctactcagac	6	13	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55541472	T	T	55541472	3	4	160	1	0	0	0	0	1	0	0	0	11248	1377	48	3	561	3	OR5D13	11	55541472	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	107889	55541472	79465044	708	134536											
OR5I1	10798	broad.mit.edu	37	chr11	55703126	55703126	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagtcccttggtagatcgTcactgaagtcaggtgagagg	15	7	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55703126	A	A	55703126	3	1	160	1	0	0	0	0	1	0	0	0	11258	1667	58	5	196	5	OR5I1	11	55703126	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	161654	55703126	79303390	709	134537											
OR8H3	390152	broad.mit.edu	37	chr11	55890084	55890084	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagttactcaactgtcgtcaCacctaaaaccttagcgaact	5	13	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55890084	G	G	55890084	3	3	160	1	0	0	0	0	1	0	0	0	11333	478	17	4	238	4	OR8H3	11	55890084	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	186958	55890084	79116432	710	134538											
OR5J2	282775	broad.mit.edu	37	chr11	55944722	55944722	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggagtcattgccatggccaCcttcttgactgtgatcattt	9	11	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55944722	G	G	55944722	3	3	160	1	0	0	0	0	1	0	0	0	11259	507	18	4	631	4	OR5J2	11	55944722	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	54638	55944722	79061794	711	134539											
OR5T1	390155	broad.mit.edu	37	chr11	56043396	56043397	+	Missense_Mutation	DNP	GG	TT	TT													gttgtcactccaaaaatgttGgtcaatttcctggcaaaaaa					rs113612396	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	56043397	TT	TT	56043396	3	4	160	1	0	0	0	0	1	0	0	0	11275	1339	47	2	284	2	OR5T1	11	56043396	Missense_Mutation	DNP	GG	TCGA-50-5933-01A-11D-1753-08	98674	56043396	78963120	712	134540											
OR1S2	219958	broad.mit.edu	37	chr11	57970951	57970951	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcccaggacagctctgaTgatgcagacataggagaaga	11	9	1	5			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57970951	C	C	57970951	3	2	160	1	0	0	0	0	1	0	0	0	11067	1464	51	5	277	5	OR1S2	11	57970951	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	1927555	57970951	77035565	713	134541											
OR10V1	390201	broad.mit.edu	37	chr11	59481191	59481191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaatgactgcaattgtaGcatttccaccgaggctggtc	10	10	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59481191	T	T	59481191	3	4	160	1	0	0	0	0	1	0	0	0	11014	971	34	3	805	3	OR10V1	11	59481191	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1510240	59481191	75525325	714	134542											
MS4A1	931	broad.mit.edu	37	chr11	60233781	60233781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattttaaccacactgtgcCtcaatttcttcaactgtaaa	4	10	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60233781	T	T	60233781	1	4	160	0	1	0	0	0	0	0	0	0	9948	696	24	4		4	MS4A1	11	60233781	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	752590	60233781	74772735	715	134543											
DAGLA	747	broad.mit.edu	37	chr11	61493400	61493400	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgccctgtttccataaCgtctgggtcccagctcttct	8	15	3	0	rs140469647	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61493400	T	T	61493400	1	4	160	0	1	0	0	0	0	0	0	0	4259	551	19	4		4	DAGLA	11	61493400	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1259619	61493400	73513116	716	134544											
EEF1G	1937	broad.mit.edu	37	chr11	62327387	62327387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttccagctcaaacacatGtcatcagaccccaggtctcc	5	16	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62327387	T	T	62327387	1	4	160	0	1	0	0	0	0	0	0	0	4968	1392	48	3		3	EEF1G	11	62327387	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	833987	62327387	72679129	717	134545											
TUT1	64852	broad.mit.edu	37	chr11	62358944	62358944	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgattcgacatccgaaTccaccgccgccatagcgact	9	16	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62358944	C	C	62358944	3	2	160	1	0	0	0	0	1	0	0	0	16906	1435	50	5	2646	5	TUT1	11	62358944	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	31557	62358944	72647572	718	134546											
CHRM1	1128	broad.mit.edu	37	chr11	62677634	62677634	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggggctgcttggtgggGgcctgtgcctcggggtccac	20	11	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62677634	A	A	62677634	2	1	160	1	0	0	0	0	0	0	0	1	3407	1219	43	4		4	CHRM1	11	62677634	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	318690	62677634	72328882	719	134547											
ATG2A	23130	broad.mit.edu	37	chr11	64676738	64676738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccagtccagagcccctaCttactggggcaggaagtact	12	13	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64676738	A	A	64676738	1	1	160	0	1	0	0	0	0	0	0	0	1097	580	20	3		3	ATG2A	11	64676738	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1999104	64676738	70329778	720	134548											
SPDYC	387778	broad.mit.edu	37	chr11	64940419	64940419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagggtcaaaaacgcctggGgtggggactttctcatcgtc	13	10	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64940419	A	A	64940419	3	1	160	1	0	0	0	0	1	0	0	0	15144	1232	43	4	803	4	SPDYC	11	64940419	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	263681	64940419	70066097	721	134549											
TSGA10IP	254187	broad.mit.edu	37	chr11	65721001	65721001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtgaggctcctgctgccCgtgaacctctcattcccctt	8	17	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65721001	A	A	65721001	1	1	160	0	1	0	0	0	0	0	0	0	16743	667	23	1		1	TSGA10IP	11	65721001	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	780582	65721001	69285515	722	134550											
RBM4	5936	broad.mit.edu	37	chr11	66411619	66411619	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaagcttgaggtgagagGggtggggtgttccctcttct	15	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66411619	T	T	66411619	1	4	160	0	1	0	0	0	0	0	0	0	13242	1247	43	2		2	RBM4	11	66411619	3'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	690618	66411619	68594897	723	134551											
LRP5	4041	broad.mit.edu	37	chr11	68183797	68183797	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctttgcctcctctagcGcccaccaccttcttgctgtt	6	17	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68183797	A	A	68183797	2	1	160	1	0	0	0	0	0	0	0	1	9047	1101	38	4		4	LRP5	11	68183797	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1772178	68183797	66822719	724	134552											
MRPL21	219927	broad.mit.edu	37	chr11	68668125	68668125	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattaatactacaaatgcaaActgccctttatgatgctaaa	4	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68668125	T	T	68668125	1	4	160	0	1	0	0	0	0	0	0	0	9881	58	2	5		5	MRPL21	11	68668125	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	484328	68668125	66338391	725	134553											
ARAP1	116985	broad.mit.edu	37	chr11	72491965	72491965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaggaccaggagactccGggagagaggcagtaagggtg	19	6	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72491965	T	T	72491965	1	4	160	0	1	0	0	0	0	0	0	0	840	1131	39	1		1	ARAP1	11	72491965	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3823840	72491965	62514551	726	134554											
PCF11	51585	broad.mit.edu	37	chr11	82893518	82893518	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcatttgaaaaatgctatTagagtagatggaaaggtaat	11	2	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82893518	C	C	82893518	2	2	160	1	0	0	0	0	0	0	0	1	11667	1742	61	5		5	PCF11	11	82893518	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	10401553	82893518	52112998	727	134555											
RAB38	23682	broad.mit.edu	37	chr11	87847049	87847049	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcatagatctttggcttGccacatgtggtatctctatc	10	9	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87847049	T	T	87847049	1	4	160	0	1	0	0	0	0	0	0	0	13036	1334	46	3		3	RAB38	11	87847049	3'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	4953531	87847049	47159467	728	134556											
FAT3	120114	broad.mit.edu	37	chr11	92532295	92532295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggggtcattcagacgactgGagtcccctttgaccgtgaag	13	10	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92532295	A	A	92532295	3	1	160	1	0	0	0	0	1	0	0	0	5748	1174	41	4	6150	4	FAT3	11	92532295	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4685246	92532295	42474221	729	134557											
ZW10	9183	broad.mit.edu	37	chr11	113631404	113631404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcccactttccctcccccTcccccctctaaaaaaaaaaa	1	20	1	0	rs140855538	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113631404	C	C	113631404	1	2	160	0	1	0	0	0	0	0	0	0	18376	1566	54	5		5	ZW10	11	113631404	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	21099109	113631404	21375112	730	134558											
TMPRSS13	84000	broad.mit.edu	37	chr11	117787940	117787940	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcacgcacccgatgagCggtagctgcttctggccctc	13	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117787940	A	A	117787940	2	1	160	1	0	0	0	0	0	0	0	1	16368	755	27	3		3	TMPRSS13	11	117787940	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	4156536	117787940	17218576	731	134559											
VPS11	55823	broad.mit.edu	37	chr11	118944473	118944473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagtgtcttcccaggacCacttctaccaattttctaat	6	11	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118944473	T	T	118944473	1	4	160	0	1	0	0	0	0	0	0	0	17315	609	21	4		4	VPS11	11	118944473	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1156533	118944473	16062043	732	134560											
HMBS	3145	broad.mit.edu	37	chr11	118960402	118960402	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catctctatagagtggacctGgttgttcactccttgaagga	10	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118960402	C	C	118960402	2	2	160	1	0	0	0	0	0	0	0	1	7286	1335	47	4		4	HMBS	11	118960402	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	15929	118960402	16046114	733	134561											
GRIK4	2900	broad.mit.edu	37	chr11	120776196	120776196	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaatggtcggggagctgatCgctagggtaaggagaggaca	19	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120776196	T	T	120776196	2	4	160	1	0	0	0	0	0	0	0	1	6842	874	31	4		4	GRIK4	11	120776196	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	1815794	120776196	14230320	734	134562											
C11orf63	79864	broad.mit.edu	37	chr11	122817133	122817133	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcaaattaatggttcataAagacttttatgctagatgtc	6	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122817133	T	T	122817133	1	4	160	0	1	0	0	0	0	0	0	0	1666	29	1	5		5	C11orf63	11	122817133	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2040937	122817133	12189383	735	134563											
GRAMD1B	57476	broad.mit.edu	37	chr11	123471196	123471196	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttcttcacttcgtttggGgcccgggataggacatatat	10	10	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123471196	T	T	123471196	2	4	160	1	0	0	0	0	0	0	0	1	6814	1219	43	2		2	GRAMD1B	11	123471196	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	654063	123471196	11535320	736	134564											
OR6X1	390260	broad.mit.edu	37	chr11	123625330	123625330	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggattctgactatgtaaGgtccttcgggacctgactct	12	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123625330	C	C	123625330	1	2	160	0	1	0	0	0	0	0	0	0	11306	1015	35	4		4	OR6X1	11	123625330	5'Flank	SNP	G	TCGA-50-5933-01A-11D-1753-08	154134	123625330	11381186	737	134565											
OR10G8	219869	broad.mit.edu	37	chr11	123900397	123900397	+	Frame_Shift_Del	DEL	C	-	-													ccatgccccagcgctggacgCccccctctttggagtcttcc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123900397	-	-	123900397	7	5	160	1	0	1	0	1	0	0	0	0	10997	739	26	0	70	0	OR10G8	11	123900397	Frame_Shift_Del	DEL	C	TCGA-50-5933-01A-11D-1753-08	275067	123900397	11106119	738	134566											
OR8G2	26492	broad.mit.edu	37	chr11	124095992	124095992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatctcttccctctcttgGggctctcctgctccagcacc	8	17	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124095992	T	T	124095992	3	4	160	1	0	0	0	0	1	0	0	0	11329	1232	43	2	597	2	OR8G2	11	124095992	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	195595	124095992	10910524	739	134567											
PKNOX2	63876	broad.mit.edu	37	chr11	125268013	125268013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctcctaagcccagctctGgagccacgcgtggaggaagg	15	12	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125268013	T	T	125268013	1	4	160	0	1	0	0	0	0	0	0	0	12078	1363	47	2		2	PKNOX2	11	125268013	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1172021	125268013	9738503	740	134568											
GLB1L2	89944	broad.mit.edu	37	chr11	134212620	134212620	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcggcccggagcctccAggctccagaatgtctttgtc	11	15	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134212620	G	G	134212620	1	3	160	0	1	0	0	0	0	0	0	0	6493	203	7	5		5	GLB1L2	11	134212620	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	8944607	134212620	793896	741	134569											
LAG3	3902	broad.mit.edu	37	chr12	6882248	6882248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagagaagaaacagaaacCcaagttcttcctgcaccctg	9	12	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6882248	A	A	6882248	1	1	160	0	1	0	0	0	0	0	0	0	8672	638	22	2		2	LAG3	12	6882248	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08		6882248	126969647	742	134570											
PTPN6	5777	broad.mit.edu	37	chr12	7064898	7064898	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagaacaagggcaagaacCgctacaagaacattctcccc	8	13	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7064898	T	T	7064898	3	4	160	1	0	0	0	0	1	0	0	0	12900	652	23	4	867	4	PTPN6	12	7064898	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	182650	7064898	126786997	743	134571											
C12orf59	120939	broad.mit.edu	37	chr12	10332293	10332293	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatcaactctcagaagagtCtgaaaggaaatgaactgcgg	10	7	3	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10332293	A	A	10332293	1	1	160	0	1	0	0	0	0	0	0	0	1715	928	32	3		3	C12orf59	12	10332293	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3267395	10332293	123519602	744	134572											
ATF7IP	55729	broad.mit.edu	37	chr12	14577856	14577856	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtaaagactcattggAtgagaaaaataaagctgata	9	4	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14577856	T	T	14577856	3	4	160	1	0	0	0	0	1	0	0	0	1091	333	12	5	1009	5	ATF7IP	12	14577856	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	4245563	14577856	119274039	745	134573											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	160	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	10820429	25398285	108453610	746	134574											
STK38L	23012	broad.mit.edu	37	chr12	27470173	27470173	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatacaagtgaaaatttaaCtcctctatatattgcttttt	3	6	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27470173	T	T	27470173	1	4	160	0	1	0	0	0	0	0	0	0	15422	580	20	4		4	STK38L	12	27470173	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2071888	27470173	106381722	747	134575											
CCDC91	55297	broad.mit.edu	37	chr12	28605528	28605528	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agacagaacatgcaaaagatCaagaaaaagtatctcaggaa	8	6	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28605528	A	A	28605528	3	1	160	1	0	0	0	0	1	0	0	0	2898	827	29	3	1080	3	CCDC91	12	28605528	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1135355	28605528	105246367	748	134576											
OVCH1	341350	broad.mit.edu	37	chr12	29648274	29648274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcaggactcatatattcaCggctgttgtattcaggatgg	10	7	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29648274	A	A	29648274	3	1	160	1	0	0	0	0	1	0	0	0	11417	536	19	3	3106	3	OVCH1	12	29648274	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1042746	29648274	104203621	749	134577											
AMN1	196394	broad.mit.edu	37	chr12	31862270	31862270	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtccctgcatactcattAttttaatcagtctgtctttt	4	10	5	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31862270	C	C	31862270	3	2	160	1	0	0	0	0	1	0	0	0	581	449	16	5	672	5	AMN1	12	31862270	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	2213996	31862270	101989625	750	134578											
C12orf35	55196	broad.mit.edu	37	chr12	32135455	32135455	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagactcatctcatgatgtGaaagttctcacttcaaagac	6	11	4	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32135455	A	A	32135455	2	1	160	1	0	0	0	0	0	0	0	1	1695	1277	45	4		4	C12orf35	12	32135455	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	273185	32135455	101716440	751	134579											
PKP2	5318	broad.mit.edu	37	chr12	33021742	33021742	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggaatataggcgtgaacCaccacgcacggtcccaattt	10	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33021742	G	G	33021742	1	3	160	0	1	0	0	0	0	0	0	0	12080	609	21	4		4	PKP2	12	33021742	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	886287	33021742	100830153	752	134580											
KIF21A	55605	broad.mit.edu	37	chr12	39720008	39720008	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaattgtttgatacaagaTgaaagtatttaaaatatgta	8	1	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39720008	G	G	39720008	1	3	160	0	1	0	0	0	0	0	0	0	8358	1479	51	5		5	KIF21A	12	39720008	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	6698266	39720008	94131887	753	134581											
COL2A1	1280	broad.mit.edu	37	chr12	48369668	48369668	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctgatgccctaaaagaGgccctgagcaaaaaagagct	11	10	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48369668	A	A	48369668	1	1	160	0	1	0	0	0	0	0	0	0	3719	1015	35	4		4	COL2A1	12	48369668	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	8649660	48369668	85482227	754	134582											
PFKM	5213	broad.mit.edu	37	chr12	48525021	48525021	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttgactctcagagaatctCttcccagggatcctgtctta	8	12	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48525021	T	T	48525021	1	4	160	0	1	0	0	0	0	0	0	0	11860	928	32	4		4	PFKM	12	48525021	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	155353	48525021	85326874	755	134583											
ADCY6	112	broad.mit.edu	37	chr12	49172026	49172026	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgcagaggaacagcagCacattggcaccgagctgcag	14	10	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49172026	A	A	49172026	2	1	160	1	0	0	0	0	0	0	0	1	298	697	25	3		3	ADCY6	12	49172026	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	647005	49172026	84679869	756	134584											
LARP4	113251	broad.mit.edu	37	chr12	50829370	50829370	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggaagaaataaaaaagttGactacagaccctgatctaat	7	6	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50829370	T	T	50829370	3	4	160	1	0	0	0	0	1	0	0	0	8702	1281	45	3	516	3	LARP4	12	50829370	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1657344	50829370	83022525	757	134585											
ACVRL1	94	broad.mit.edu	37	chr12	52309232	52309232	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgcccaccgcgacttcaaGagccgcaatgtgctggtcaa	10	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52309232	T	T	52309232	3	4	160	1	0	0	0	0	1	0	0	0	225	933	33	3	1018	3	ACVRL1	12	52309232	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1479862	52309232	81542663	758	134586											
KRT82	3888	broad.mit.edu	37	chr12	52799698	52799698	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgaggcacttgatctgctCcttctcatccctctttaccc	6	15	3	2	rs145722634		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52799698	A	A	52799698	4	1	160	1	0	0	0	0	0	1	0	0	8567	864	30	3	1213	3	KRT82	12	52799698	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	490466	52799698	81052197	759	134587											
KRT6A	3853	broad.mit.edu	37	chr12	52883764	52883764	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatctcagatctcagcctcTggatcatgcggttgatctca	9	12	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52883764	C	C	52883764	3	2	160	1	0	0	0	0	1	0	0	0	8551	1580	55	5	544	5	KRT6A	12	52883764	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	84066	52883764	80968131	760	134588											
KRT73	319101	broad.mit.edu	37	chr12	53002076	53002077	+	Missense_Mutation	DNP	CC	AA	AA													cccagcctggtcctggcttcCccacgggggctacagttccc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	53002077	AA	AA	53002076	3	1	160	1	0	0	0	0	1	0	0	0	8557	610	22	2	99	2	KRT73	12	53002076	Missense_Mutation	DNP	CC	TCGA-50-5933-01A-11D-1753-08	118312	53002076	80849819	761	134589											
COPZ1	22818	broad.mit.edu	37	chr12	54737200	54737200	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctaatagagccgtgttcctCtggcttctgaccaagctaat	8	12	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54737200	G	G	54737200	1	3	160	0	1	0	0	0	0	0	0	0	3773	928	32	4		4	COPZ1	12	54737200	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1735124	54737200	79114695	762	134590											
NACA	4666	broad.mit.edu	37	chr12	57109568	57109568	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattcactggagaaagcggcGcatcacagggttagtattgg	14	7	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57109568	A	A	57109568	1	1	160	0	1	0	0	0	0	0	0	0	10227	1102	38	4		4	NACA	12	57109568	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2372368	57109568	76742327	763	134591											
NACA	4666	broad.mit.edu	37	chr12	57110843	57110843	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagttgctggggccttttTgggagaggaagaagtggcaa	18	4	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57110843	A	A	57110843	1	1	160	0	1	0	0	0	0	0	0	0	10227	1821	63	5		5	NACA	12	57110843	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1275	57110843	76741052	764	134592											
ZBTB39	9880	broad.mit.edu	37	chr12	57398575	57398575	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagcacagccttgtgggCcgggaaggagcggctcccca	16	14	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398575	T	T	57398575	3	4	160	1	0	0	0	0	1	0	0	0	17666	739	26	4	2015	4	ZBTB39	12	57398575	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	287732	57398575	76453320	765	134593											
LRIG3	121227	broad.mit.edu	37	chr12	59274658	59274658	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgtgtttctggctgaacCgtgatctggggtttgggaaa	15	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59274658	T	T	59274658	2	4	160	1	0	0	0	0	0	0	0	1	9033	639	23	4		4	LRIG3	12	59274658	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	1876083	59274658	74577237	766	134594											
SRGAP1	57522	broad.mit.edu	37	chr12	64502733	64502733	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatagataatctctatgagaGggcgcttcacatccgcaaac	8	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64502733	A	A	64502733	3	1	160	1	0	0	0	0	1	0	0	0	15263	1000	35	4	1897	4	SRGAP1	12	64502733	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5228075	64502733	69349162	767	134595											
RAB3IP	117177	broad.mit.edu	37	chr12	70209151	70209151	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtttgtatagttgatcaGatgttttgggaggttatgca	12	3	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70209151	T	T	70209151	3	4	160	1	0	0	0	0	1	0	0	0	13046	933	33	3	1398	3	RAB3IP	12	70209151	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5706418	70209151	63642744	768	134596											
PTPRB	5787	broad.mit.edu	37	chr12	70954551	70954551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggccttgaaaccgccaCtccgtcaggtccttgtcttt	8	14	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70954551	A	A	70954551	3	1	160	1	0	0	0	0	1	0	0	0	12904	564	20	3	2387	3	PTPRB	12	70954551	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	745400	70954551	62897344	769	134597											
PTPRB	5787	broad.mit.edu	37	chr12	70960398	70960398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatatcatatctttctgCcacaccagcagctttttgcc	6	13	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70960398	A	A	70960398	3	1	160	1	0	0	0	0	1	0	0	0	12904	739	26	3	3006	3	PTPRB	12	70960398	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	5847	70960398	62891497	770	134598											
PTPRB	5787	broad.mit.edu	37	chr12	71029809	71029809	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actttctcatttttgaaaagAcactgttgtttctggacatg	7	7	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71029809	G	G	71029809	2	3	160	1	0	0	0	0	0	0	0	1	12904	273	10	5		5	PTPRB	12	71029809	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	69411	71029809	62822086	771	134599											
NAV3	89795	broad.mit.edu	37	chr12	78400193	78400193	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttttcttctaaacaatGtccagattcctccaaaggac	4	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78400193	T	T	78400193	1	4	160	0	1	0	0	0	0	0	0	0	10279	1392	48	3		3	NAV3	12	78400193	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	7370384	78400193	55451702	772	134600											
MYF5	4617	broad.mit.edu	37	chr12	81112085	81112085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctcacctttggtcagaaCatcttttgccaagacctgaa	7	12	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81112085	T	T	81112085	1	4	160	0	1	0	0	0	0	0	0	0	10121	493	17	4		4	MYF5	12	81112085	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2711892	81112085	52739810	773	134601											
SLC6A15	55117	broad.mit.edu	37	chr12	85266824	85266824	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaagtataaataacaagaTaaaaactaagaaaaaaggca	5	3	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85266824	A	A	85266824	1	1	160	0	1	0	0	0	0	0	0	0	14792	1421	49	5		5	SLC6A15	12	85266824	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	4154739	85266824	48585071	774	134602											
SLC6A15	55117	broad.mit.edu	37	chr12	85285811	85285811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcttaaaagcatcatcaGctgcgtcttcattggaaaga	8	8	5	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85285811	T	T	85285811	3	4	160	1	0	0	0	0	1	0	0	0	14792	971	34	3	2261	3	SLC6A15	12	85285811	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	18987	85285811	48566084	775	134603											
LUM	4060	broad.mit.edu	37	chr12	91497992	91497992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacattcatacatatccgGtggaagactggtttctgaga	10	7	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91497992	T	T	91497992	3	4	160	1	0	0	0	0	1	0	0	0	9172	1261	44	3	53	3	LUM	12	91497992	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	6212181	91497992	42353903	776	134604											
ANKS1B	56899	broad.mit.edu	37	chr12	99188504	99188504	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagaaatgaacctatcaaaTaccagtgagagctatggaat	9	6	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99188504	C	C	99188504	1	2	160	0	1	0	0	0	0	0	0	0	689	1421	49	5		5	ANKS1B	12	99188504	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	7690512	99188504	34663391	777	134605											
SCYL2	55681	broad.mit.edu	37	chr12	100728058	100728058	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagaagtaagtaggttgcAcatgaattatatgtggtccg	12	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100728058	T	T	100728058	1	4	160	0	1	0	0	0	0	0	0	0	14061	174	6	5		5	SCYL2	12	100728058	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1539554	100728058	33123837	778	134606											
SCYL2	55681	broad.mit.edu	37	chr12	100732925	100732925	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatagcagttcagctagcaAtgatttaaaagatctttttg	7	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100732925	T	T	100732925	3	4	160	1	0	0	0	0	1	0	0	0	14061	101	4	5	2831	5	SCYL2	12	100732925	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	4867	100732925	33118970	779	134607											
ANO4	121601	broad.mit.edu	37	chr12	101295475	101295475	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtttgcaaatccatcaacGgcgaagtgtggcaagccgcc	12	12	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101295475	T	T	101295475	1	4	160	0	1	0	0	0	0	0	0	0	699	1131	39	1		1	ANO4	12	101295475	5'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	562550	101295475	32556420	780	134608											
TXNRD1	7296	broad.mit.edu	37	chr12	104705135	104705135	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatcttcccaagtcctAtgactatgaccttatcatca	5	11	3	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104705135	G	G	104705135	3	3	160	1	0	0	0	0	1	0	0	0	16933	449	16	5	514	5	TXNRD1	12	104705135	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	3409660	104705135	29146760	781	134609											
ALDH1L2	160428	broad.mit.edu	37	chr12	105428127	105428127	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcttccacgaacaaccgcCcagcagcaatacagttctct	5	15	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105428127	G	G	105428127	3	3	160	1	0	0	0	0	1	0	0	0	495	623	22	4	596	4	ALDH1L2	12	105428127	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	722992	105428127	28423768	782	134610											
BTBD11	121551	broad.mit.edu	37	chr12	108011058	108011058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttattctcttataaaacCcccttctctgggcttgcagg	7	12	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108011058	A	A	108011058	1	1	160	0	1	0	0	0	0	0	0	0	1548	638	22	2		2	BTBD11	12	108011058	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2582931	108011058	25840837	783	134611											
CCDC63	160762	broad.mit.edu	37	chr12	111318979	111318979	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaagaaggacacctctcaGtacaacctggagatccgaga	10	11	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111318979	A	A	111318979	2	1	160	1	0	0	0	0	0	0	0	1	2862	1020	36	4		4	CCDC63	12	111318979	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	3307921	111318979	22532916	784	134612											
TBX5	6910	broad.mit.edu	37	chr12	114803965	114803965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaccaggggtgatcacaCtcacctttcctcttggtaca	8	12	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114803965	A	A	114803965	1	1	160	0	1	0	0	0	0	0	0	0	15783	564	20	3		3	TBX5	12	114803965	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3484986	114803965	19047930	785	134613											
TBX5	6910	broad.mit.edu	37	chr12	114803991	114803991	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcttggtacaatggtAaatttggctatgctcctggg	10	8	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114803991	C	C	114803991	3	2	160	1	0	0	0	0	1	0	0	0	15783	362	13	5	670	5	TBX5	12	114803991	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	26	114803991	19047904	786	134614											
TBX3	6926	broad.mit.edu	37	chr12	115117548	115117548	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccaggctgaaatcttcccCaccgcagggtaccacgcttg	10	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115117548	G	G	115117548	1	3	160	0	1	0	0	0	0	0	0	0	15781	609	21	4		4	TBX3	12	115117548	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	313557	115117548	18734347	787	134615											
TAOK3	51347	broad.mit.edu	37	chr12	118671547	118671547	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catactgtccttcatccataGctaagatcacctctggagcc	6	14	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118671547	C	C	118671547	3	2	160	1	0	0	0	0	1	0	0	0	15668	971	34	4	2173	4	TAOK3	12	118671547	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3553999	118671547	15180348	788	134616											
GCN1L1	10985	broad.mit.edu	37	chr12	120580432	120580432	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttccagacatgcagggacGcctgccgcaccaccagctgg	11	16	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120580432	A	A	120580432	3	1	160	1	0	0	0	0	1	0	0	0	6361	1087	38	4	2367	4	GCN1L1	12	120580432	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1908885	120580432	13271463	789	134617											
CCDC92	80212	broad.mit.edu	37	chr12	124428133	124428133	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgcagaggggtgtgcgcctCccaggagagagcagaaggaa	18	8	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124428133	A	A	124428133	1	1	160	0	1	0	0	0	0	0	0	0	2899	870	30	3		3	CCDC92	12	124428133	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3847701	124428133	9423762	790	134618											
NCOR2	9612	broad.mit.edu	37	chr12	124817745	124817745	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgggagtgccctggctccGtcatgccctccggtggggac	15	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124817745	A	A	124817745	3	1	160	1	0	0	0	0	1	0	0	0	10331	1145	40	4	882	4	NCOR2	12	124817745	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	389612	124817745	9034150	791	134619											
NCOR2	9612	broad.mit.edu	37	chr12	124824809	124824809	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcggcccacaaggagtcccGgagcggggggtgggggctct	20	11	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124824809	A	A	124824809	1	1	160	0	1	0	0	0	0	0	0	0	10331	1131	39	4		4	NCOR2	12	124824809	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	7064	124824809	9027086	792	134620											
RIMBP2	23504	broad.mit.edu	37	chr12	130963548	130963548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgccgccgttcagccGcctctcgcatatgctgtggg	13	15	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130963548	T	T	130963548	3	4	160	1	0	0	0	0	1	0	0	0	13472	1087	38	3	3215	3	RIMBP2	12	130963548	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	6138739	130963548	2888347	793	134621											
EP400	57634	broad.mit.edu	37	chr12	132551301	132551301	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatttctctggactctcccAttatttctactgtttagacc	5	11	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132551301	G	G	132551301	1	3	160	0	1	0	0	0	0	0	0	0	5191	232	8	5		5	EP400	12	132551301	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	1587753	132551301	1300594	794	134622											
GOLGA3	2802	broad.mit.edu	37	chr12	133357344	133357344	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatttctaggcactggagcGtcctctggaacgccctgtga	12	11	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133357344	A	A	133357344	1	1	160	0	1	0	0	0	0	0	0	0	6618	1160	40	4		4	GOLGA3	12	133357344	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	806043	133357344	494551	795	134623											
RNF17	56163	broad.mit.edu	37	chr13	25341431	25341431	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccattgtgaacttcaatGtggacatgctttttgtgaac	8	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25341431	A	A	25341431	3	1	160	1	0	0	0	0	1	0	0	0	13572	1377	48	4	158	4	RNF17	13	25341431	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08		25341431	89828447	796	134624											
RNF17	56163	broad.mit.edu	37	chr13	25399700	25399700	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtgcttgtaattcattcAacacttacattttaagtttc	4	8	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25399700	T	T	25399700	1	4	160	0	1	0	0	0	0	0	0	0	13572	145	5	5		5	RNF17	13	25399700	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	58269	25399700	89770178	797	134625											
FLT3	2322	broad.mit.edu	37	chr13	28626770	28626770	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggcgtcctggttttccaTttttctaaagtaaggtcttc	9	9	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28626770	C	C	28626770	3	2	160	1	0	0	0	0	1	0	0	0	6000	1493	52	5	2535	5	FLT3	13	28626770	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3227070	28626770	86543108	798	134626											
MTUS2	23281	broad.mit.edu	37	chr13	29599371	29599371	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaggcattctttggaaaGagcaagcagctctgtagctg	14	7	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599371	A	A	29599371	3	1	160	1	0	0	0	0	1	0	0	0	10060	942	33	4	568	4	MTUS2	13	29599371	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	972601	29599371	85570507	799	134627											
C13orf33	84935	broad.mit.edu	37	chr13	31480629	31480629	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccggacggaagcaggcGgtgtgaggaccgacgacgcg	19	11	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31480629	A	A	31480629	1	1	160	0	1	0	0	0	0	0	0	0	1740	1131	39	4		4	C13orf33	13	31480629	5'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	1881258	31480629	83689249	800	134628											
STARD13	90627	broad.mit.edu	37	chr13	33739517	33739517	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttttcaagaaaatcatgatCattcttgacagccacaatgt	5	9	4	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33739517	T	T	33739517	3	4	160	1	0	0	0	0	1	0	0	0	15374	826	29	4	3109	4	STARD13	13	33739517	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2258888	33739517	81430361	801	134629											
DCLK1	9201	broad.mit.edu	37	chr13	36379738	36379738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacactgcgcctggcccaCaacactttcaaaaggaggca	10	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36379738	A	A	36379738	1	1	160	0	1	0	0	0	0	0	0	0	4324	493	17	3		3	DCLK1	13	36379738	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2640221	36379738	78790140	802	134630											
FAM48A	55578	broad.mit.edu	37	chr13	37593535	37593535	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaaccaaatggaacacCtgttaaataaaactcatggt	5	7	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37593535	A	A	37593535	5	1	160	1	0	0	0	0	0	0	1	0	5623	695	24	2	543	2	FAM48A	13	37593535	Splice_Site	SNP	C	TCGA-50-5933-01A-11D-1753-08	1213797	37593535	77576343	803	134631											
POSTN	10631	broad.mit.edu	37	chr13	38153086	38153086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaatattggtaagaaaGcataaaataaaaatcgaggt	8	2	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38153086	T	T	38153086	1	4	160	0	1	0	0	0	0	0	0	0	12354	986	34	3		3	POSTN	13	38153086	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	559551	38153086	77016792	804	134632											
POSTN	10631	broad.mit.edu	37	chr13	38158809	38158809	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcataattagtaaattaCagtaagtaaaaaaacaaaaa	4	4	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38158809	A	A	38158809	1	1	160	0	1	0	0	0	0	0	0	0	12354	493	17	3		3	POSTN	13	38158809	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5723	38158809	77011069	805	134633											
C13orf23	80209	broad.mit.edu	37	chr13	39611495	39611495	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggaggaaaaagactcCacgagcaagagaggatgcga	15	7	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39611495	A	A	39611495	1	1	160	0	1	0	0	0	0	0	0	0	1734	609	21	2		2	C13orf23	13	39611495	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	1452686	39611495	75558383	806	134634											
NHLRC3	387921	broad.mit.edu	37	chr13	39616394	39616394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaggagatatttacattGtggatggagatggaggattg	14	3	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39616394	A	A	39616394	3	1	160	1	0	0	0	0	1	0	0	0	10502	1377	48	4	552	4	NHLRC3	13	39616394	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4899	39616394	75553484	807	134635											
FNDC3A	22862	broad.mit.edu	37	chr13	49771970	49771970	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtctcagttatgaaataaAaggactttcaccagcaacta	7	8	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49771970	T	T	49771970	3	4	160	1	0	0	0	0	1	0	0	0	6027	14	1	5	2539	5	FNDC3A	13	49771970	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	10155576	49771970	65397908	808	134636											
VPS36	51028	broad.mit.edu	37	chr13	53007716	53007716	+	Intron	SNP	G	A	A													gaaatatattctaaattacaGaagggaattaggcacagctg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53007716	A	A	53007716	1	1	160	0	1	0	0	0	0	0	0	0	17331	957	33	4		4	VPS36	13	53007716	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3235746	53007716	62162162	809	134637	577	2									
VPS36	51028	broad.mit.edu	37	chr13	53007718	53007718	+	Intron	SNP	A	C	C													aatatattctaaattacagaAgggaattaggcacagctgta							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53007718	C	C	53007718	1	2	160	0	1	0	0	0	0	0	0	0	17331	87	3	5		5	VPS36	13	53007718	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2	53007718	62162160	810	134638	577	2									
TDRD3	81550	broad.mit.edu	37	chr13	61059946	61059946	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactagaagtgtgtatctcAtgtccaagtggatagcagag	11	6	1	2	rs17855091		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61059946	G	G	61059946	3	3	160	1	0	0	0	0	1	0	0	0	15854	217	8	5	607	5	TDRD3	13	61059946	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	8052228	61059946	54109932	811	134639											
KLHL1	57626	broad.mit.edu	37	chr13	70370930	70370930	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatgtcttggttttgggatTgtaacattcaacagtgttca	9	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70370930	A	A	70370930	3	1	160	1	0	0	0	0	1	0	0	0	8436	1812	63	5	687	5	KLHL1	13	70370930	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	9310984	70370930	44798948	812	134640											
DACH1	1602	broad.mit.edu	37	chr13	72014709	72014709	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccttaaaaggactttattTttttctgaactttcccatga	4	9	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72014709	G	G	72014709	1	3	160	0	1	0	0	0	0	0	0	0	4253	1856	64	5		5	DACH1	13	72014709	3'UTR	SNP	T	TCGA-50-5933-01A-11D-1753-08	1643779	72014709	43155169	813	134641											
DIS3	22894	broad.mit.edu	37	chr13	73347793	73347793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaattttaattaaacatcCccacataaaattaatacttt	0	8	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73347793	A	A	73347793	1	1	160	0	1	0	0	0	0	0	0	0	4575	638	22	2		2	DIS3	13	73347793	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1333084	73347793	41822085	814	134642											
RBM26	64062	broad.mit.edu	37	chr13	79928561	79928561	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attacgggcacaatcgtaagAcctttgctttacctgaggaa	9	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79928561	T	T	79928561	1	4	160	0	1	0	0	0	0	0	0	0	13234	290	10	5		5	RBM26	13	79928561	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	6580768	79928561	35241317	815	134643											
SLITRK5	26050	broad.mit.edu	37	chr13	88327942	88327943	+	Missense_Mutation	DNP	AG	TA	TA													gaaccgtctctatcccaatgAgtttgtcaattacactgggg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	88327943	TA	TA	88327942	3	4	160	1	0	0	0	0	1	0	0	0	14860	304	11	5	301	5	SLITRK5	13	88327942	Missense_Mutation	DNP	AG	TCGA-50-5933-01A-11D-1753-08	8399381	88327942	26841936	816	134644											
GPC6	10082	broad.mit.edu	37	chr13	94197778	94197778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagggagcttttctatcCctcttaaatatttatagcat	5	7	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94197778	A	A	94197778	1	1	160	0	1	0	0	0	0	0	0	0	6667	638	22	2		2	GPC6	13	94197778	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5869836	94197778	20972100	817	134645											
HS6ST3	266722	broad.mit.edu	37	chr13	97226845	97226845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctcctcttcctggtcCagttacttctattacggcac	8	14	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97226845	A	A	97226845	1	1	160	0	1	0	0	0	0	0	0	0	7439	609	21	2		2	HS6ST3	13	97226845	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3029067	97226845	17943033	818	134646											
NALCN	259232	broad.mit.edu	37	chr13	101795334	101795334	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttattttcattattctcttGagaaattggattccaggacc	6	7	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101795334	C	C	101795334	1	2	160	0	1	0	0	0	0	0	0	0	10242	1305	45	4		4	NALCN	13	101795334	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	4568489	101795334	13374544	819	134647											
ERCC5	2073	broad.mit.edu	37	chr13	103486936	103486936	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttattttctttaattgaGgtaacatttagatacagtga	6	5	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103486936	A	A	103486936	1	1	160	0	1	0	0	0	0	0	0	0	5258	1015	35	4		4	ERCC5	13	103486936	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1691602	103486936	11682942	820	134648											
MCF2L	23263	broad.mit.edu	37	chr13	113718714	113718714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggactactgccactccCggtggctgtgccagcgcacg	12	17	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113718714	T	T	113718714	3	4	160	1	0	0	0	0	1	0	0	0	9472	643	23	4	874	4	MCF2L	13	113718714	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	10231778	113718714	1451164	821	134649											
POTEG	404785	broad.mit.edu	37	chr14	19553587	19553587	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gattctgctatgaagacactCaggagcaagatgggcaagtg	13	7	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19553587	A	A	19553587	2	1	160	1	0	0	0	0	0	0	0	1	12362	813	29	3		3	POTEG	14	19553587	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08		19553587	87795953	822	134650											
POTEG	404785	broad.mit.edu	37	chr14	19566058	19566058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaacagatgctaaaaGtctcttctgaaaacagcaat	6	7	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19566058	T	T	19566058	3	4	160	1	0	0	0	0	1	0	0	0	12362	1029	36	3	1124	3	POTEG	14	19566058	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	12471	19566058	87783482	823	134651											
POTEG	404785	broad.mit.edu	37	chr14	19566169	19566169	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttgtggaagacaatctttCcatgggctggggaaaggtgg	15	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19566169	A	A	19566169	1	1	160	0	1	0	0	0	0	0	0	0	12362	870	30	3		3	POTEG	14	19566169	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	111	19566169	87783371	824	134652											
OR4N2	390429	broad.mit.edu	37	chr14	20295661	20295661	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcctccttggtctgacCcagtctcaagatattcagct	6	13	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20295661	A	A	20295661	2	1	160	1	0	0	0	0	0	0	0	1	11171	610	22	2		2	OR4N2	14	20295661	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	729492	20295661	87053879	825	134653											
OR4K14	122740	broad.mit.edu	37	chr14	20482705	20482705	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggatcacggtgtaggagatCaggaggagcagaaaacagct	15	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20482705	G	G	20482705	2	3	160	1	0	0	0	0	0	0	0	1	11163	813	29	4		4	OR4K14	14	20482705	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	187044	20482705	86866835	826	134654											
OR4K17	390436	broad.mit.edu	37	chr14	20586056	20586056	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaagcccctacactacaTgaccatcatgaacaagaagg	7	11	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20586056	A	A	20586056	3	1	160	1	0	0	0	0	1	0	0	0	11165	1464	51	5	493	5	OR4K17	14	20586056	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	103351	20586056	86763484	827	134655											
OR4N5	390437	broad.mit.edu	37	chr14	20612048	20612048	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattttcaccataaagtcaGaccctgggctcacagccccc	6	16	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20612048	T	T	20612048	3	4	160	1	0	0	0	0	1	0	0	0	11173	942	33	3	156	3	OR4N5	14	20612048	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	25992	20612048	86737492	828	134656											
OR11H4	390442	broad.mit.edu	37	chr14	20711524	20711524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcacttcctgtgtgacatgGacccattgatggctctatcc	8	12	2	2	rs142588807	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20711524	T	T	20711524	3	4	160	1	0	0	0	0	1	0	0	0	11022	1174	41	3	576	3	OR11H4	14	20711524	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	99476	20711524	86638016	829	134657											
PARP2	10038	broad.mit.edu	37	chr14	20820432	20820432	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaaacgaaaaacaattggGaagatcgagaaaagtttgag	10	4	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20820432	A	A	20820432	3	1	160	1	0	0	0	0	1	0	0	0	11555	1175	41	4	591	4	PARP2	14	20820432	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	108908	20820432	86529108	830	134658											
MYH6	4624	broad.mit.edu	37	chr14	23851835	23851835	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatgggattctcagcctctCaacctgaggttccagctccc	8	15	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23851835	A	A	23851835	1	1	160	0	1	0	0	0	0	0	0	0	10132	841	29	3		3	MYH6	14	23851835	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3031403	23851835	83497705	831	134659											
MYH7	4625	broad.mit.edu	37	chr14	23884825	23884825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccttcaggaatgagcagGggagctgctcacctgggaat	13	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23884825	T	T	23884825	1	4	160	0	1	0	0	0	0	0	0	0	10133	1247	43	2		2	MYH7	14	23884825	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	32990	23884825	83464715	832	134660											
NGDN	25983	broad.mit.edu	37	chr14	23945502	23945502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacgagccaagagacgggCattgagcagctctgtcattc	12	10	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23945502	A	A	23945502	3	1	160	1	0	0	0	0	1	0	0	0	10488	710	25	3	629	3	NGDN	14	23945502	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	60677	23945502	83404038	833	134661											
CBLN3	643866	broad.mit.edu	37	chr14	24897532	24897532	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccttcaccacatggaacCggaagctgtagacaccccgg	9	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24897532	T	T	24897532	3	4	160	1	0	0	0	0	1	0	0	0	2732	652	23	4	245	4	CBLN3	14	24897532	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	952030	24897532	82452008	834	134662											
NOVA1	4857	broad.mit.edu	37	chr14	26917372	26917372	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccactaatgttttccctccTttgccaagtattgcaccaac	4	14	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26917372	A	A	26917372	3	1	160	1	0	0	0	0	1	0	0	0	10649	1606	56	5	210	5	NOVA1	14	26917372	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	2019840	26917372	80432168	835	134663											
FOXG1	2290	broad.mit.edu	37	chr14	29237307	29237307	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccacgggcaagctgcgGcgccgctccaccacctcgcg	13	19	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29237307	T	T	29237307	2	4	160	1	0	0	0	0	0	0	0	1	6067	1190	42	3		3	FOXG1	14	29237307	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2319935	29237307	78112233	836	134664											
FOXG1	2290	broad.mit.edu	37	chr14	29237327	29237327	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgccgctccaccacctcgcGggccaagctggccttcaagc	11	19	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29237327	C	C	29237327	3	2	160	1	0	0	0	0	1	0	0	0	6067	1116	39	4	844	4	FOXG1	14	29237327	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	20	29237327	78112213	837	134665											
RPL10L	140801	broad.mit.edu	37	chr14	47120967	47120967	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtaacgtcggcggtgcctCgaagtcaaaatgcgctctct	11	12	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47120967	A	A	47120967	1	1	160	0	1	0	0	0	0	0	0	0	13667	899	31	3		3	RPL10L	14	47120967	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	17883640	47120967	60228573	838	134666											
FRMD6	122786	broad.mit.edu	37	chr14	52188791	52188791	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcgcggaagctgaatggAcactctggtgagctcttacg	13	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52188791	T	T	52188791	2	4	160	1	0	0	0	0	0	0	0	1	6114	262	10	5		5	FRMD6	14	52188791	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	5067824	52188791	55160749	839	134667											
NID2	22795	broad.mit.edu	37	chr14	52505683	52505683	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagagtagtctctggaacttGtagaggtcacagctgcaaca	12	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52505683	C	C	52505683	3	2	160	1	0	0	0	0	1	0	0	0	10510	1377	48	4	2144	4	NID2	14	52505683	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	316892	52505683	54843857	840	134668											
HIF1A	3091	broad.mit.edu	37	chr14	62199167	62199167	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatgggatatgagccagaaGaacttttaggccgctcaatt	11	7	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62199167	T	T	62199167	4	4	160	1	0	0	0	0	0	1	0	0	7170	943	33	3	831	3	HIF1A	14	62199167	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	9693484	62199167	45150373	841	134669											
KCNH5	27133	broad.mit.edu	37	chr14	63417159	63417159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccagtccaaacacaCacaccaggagcacgaggact	10	15	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63417159	A	A	63417159	3	1	160	1	0	0	0	0	1	0	0	0	8105	478	17	3	1959	3	KCNH5	14	63417159	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1217992	63417159	43932381	842	134670											
SYNE2	23224	broad.mit.edu	37	chr14	64516501	64516501	+	Frame_Shift_Del	DEL	G	-	-													tttgaagaaaaacaaagaaaGccaatattgtgtcctcagag							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64516501	-	-	64516501	7	5	160	1	0	1	0	1	0	0	0	0	15565	971	34	0	7732	0	SYNE2	14	64516501	Frame_Shift_Del	DEL	G	TCGA-50-5933-01A-11D-1753-08	1099342	64516501	42833039	843	134671											
RGS6	9628	broad.mit.edu	37	chr14	72932395	72932395	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgaatggatggacagaTggatggatgggcttataatt	16	2	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72932395	A	A	72932395	1	1	160	0	1	0	0	0	0	0	0	0	13418	1479	51	5		5	RGS6	14	72932395	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	8415894	72932395	34417145	844	134672											
SNW1	22938	broad.mit.edu	37	chr14	78189634	78189634	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatcctctgtgtgaacagtTgaaaagtacttcactgtaat	7	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78189634	G	G	78189634	1	3	160	0	1	0	0	0	0	0	0	0	14993	1827	63	5		5	SNW1	14	78189634	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	5257239	78189634	29159906	845	134673											
SEL1L	6400	broad.mit.edu	37	chr14	81965717	81965717	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatacaagcaaatctggatCatgaaagctgaaaaagttgt	8	5	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81965717	A	A	81965717	1	1	160	0	1	0	0	0	0	0	0	0	14123	841	29	3		3	SEL1L	14	81965717	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3776083	81965717	25383823	846	134674											
TDP1	55775	broad.mit.edu	37	chr14	90429941	90429942	+	Missense_Mutation	DNP	GA	TT	TT													tgggacatgctggataaaggGaaccccttccagttttacct							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	90429942	TT	TT	90429941	3	4	160	1	0	0	0	0	1	0	0	0	15850	1161	41	3	485	3	TDP1	14	90429941	Missense_Mutation	DNP	GA	TCGA-50-5933-01A-11D-1753-08	8464224	90429941	16919599	847	134675											
CATSPERB	79820	broad.mit.edu	37	chr14	92054295	92054295	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttatctaaactcaacaCagtaaaaacaacaatgccat	3	9	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92054295	A	A	92054295	1	1	160	0	1	0	0	0	0	0	0	0	2717	493	17	3		3	CATSPERB	14	92054295	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1624354	92054295	15295245	848	134676											
TRIP11	9321	broad.mit.edu	37	chr14	92491728	92491728	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgatgcttcatgtttctCttctagatcagtacaaagtt	6	9	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92491728	T	T	92491728	3	4	160	1	0	0	0	0	1	0	0	0	16680	922	32	4	5777	4	TRIP11	14	92491728	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	437433	92491728	14857812	849	134677											
KIAA1409	57578	broad.mit.edu	37	chr14	94088672	94088672	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgttccaaagacttttcttCtaaggactcaggaaataatc	6	8	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94088672	A	A	94088672	3	1	160	1	0	0	0	0	1	0	0	0	8300	913	32	3	4668	3	KIAA1409	14	94088672	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1596944	94088672	13260868	850	134678											
KIAA1409	57578	broad.mit.edu	37	chr14	94120073	94120073	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacttcgtgtcttttctccCctgttcaactccagcatgat	6	13	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94120073	T	T	94120073	1	4	160	0	1	0	0	0	0	0	0	0	8300	638	22	4		4	KIAA1409	14	94120073	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	31401	94120073	13229467	851	134679											
KIAA1409	57578	broad.mit.edu	37	chr14	94120084	94120084	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttttctcccctgttcaactCcagcatgatggttcccggca	7	15	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120084	A	A	94120084	1	1	160	0	1	0	0	0	0	0	0	0	8300	870	30	3		3	KIAA1409	14	94120084	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	11	94120084	13229456	852	134680											
DICER1	23405	broad.mit.edu	37	chr14	95562968	95562968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctcttccttcggagccCtccacatcaggctctcctcc	6	20	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95562968	A	A	95562968	3	1	160	1	0	0	0	0	1	0	0	0	4561	681	24	2	1499	2	DICER1	14	95562968	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1442884	95562968	11786572	853	134681											
TDRD9	122402	broad.mit.edu	37	chr14	104508469	104508469	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccaaatggatgcaagtgtCttgggccagagagagttgcg	15	7	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104508469	A	A	104508469	3	1	160	1	0	0	0	0	1	0	0	0	15858	913	32	3	4053	3	TDRD9	14	104508469	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	8945501	104508469	2841071	854	134682											
AHNAK2	113146	broad.mit.edu	37	chr14	105411259	105411259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggtccccctgcatggagGagaggctcacgtcggcctcc	14	14	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105411259	T	T	105411259	3	4	160	1	0	0	0	0	1	0	0	0	415	1174	41	3	6862	3	AHNAK2	14	105411259	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	902790	105411259	1938281	855	134683											
OR4N4	283694	broad.mit.edu	37	chr15	22332768	22332768	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttgctgacagttatggcCtatgacaggtatgttgccat	10	7	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22332768	A	A	22332768	1	1	160	0	1	0	0	0	0	0	0	0	11172	696	24	2		2	OR4N4	15	22332768	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08		22332768	80198624	856	134684											
OR4N4	283694	broad.mit.edu	37	chr15	22333131	22333131	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagttcctctctacctGtgcttctcacctgacagtgg	8	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22333131	T	T	22333131	1	4	160	0	1	0	0	0	0	0	0	0	11172	1392	48	3		3	OR4N4	15	22333131	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	363	22333131	80198261	857	134685											
TRPM1	4308	broad.mit.edu	37	chr15	31362532	31362532	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgagttgggcccaaacagGagcctactaacacttcagta	11	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31362532	T	T	31362532	1	4	160	0	1	0	0	0	0	0	0	0	16710	1189	41	3		3	TRPM1	15	31362532	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	9029401	31362532	71168860	858	134686											
CHRNA7	1139	broad.mit.edu	37	chr15	32393544	32393544	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaccaccaacatttggctGcaaatggtaagttaagagaa	8	7	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32393544	T	T	32393544	2	4	160	1	0	0	0	0	0	0	0	1	3419	1306	46	3		3	CHRNA7	15	32393544	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1031012	32393544	70137848	859	134687											
RYR3	6263	broad.mit.edu	37	chr15	33873611	33873611	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttgcatattggcattttCagctttaaaaggtgaatgat	8	4	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33873611	G	G	33873611	1	3	160	0	1	0	0	0	0	0	0	0	13881	841	29	4		4	RYR3	15	33873611	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1480067	33873611	68657781	860	134688											
SLC12A6	9990	broad.mit.edu	37	chr15	34542848	34542848	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atacaaacaaaggaggtggtCaggatggcaaggatagtacc	13	6	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34542848	T	T	34542848	2	4	160	1	0	0	0	0	0	0	0	1	14500	813	29	4		4	SLC12A6	15	34542848	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	669237	34542848	67988544	861	134689											
ZNF770	54989	broad.mit.edu	37	chr15	35275448	35275448	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaactagttgtctaaagGttttatgacacacatcacat	7	7	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35275448	A	A	35275448	3	1	160	1	0	0	0	0	1	0	0	0	18272	1261	44	4	1891	4	ZNF770	15	35275448	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	732600	35275448	67255944	862	134690											
PLCB2	5330	broad.mit.edu	37	chr15	40585908	40585908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcacgctgcgttctgacagGaactgcccagagatcacctg	11	14	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40585908	T	T	40585908	3	4	160	1	0	0	0	0	1	0	0	0	12123	1165	41	3	1530	3	PLCB2	15	40585908	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5310460	40585908	61945484	863	134691											
TYRO3	7301	broad.mit.edu	37	chr15	41865602	41865602	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggctgtgcctccaaactGcctgtcaagtggctggccct	11	14	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41865602	T	T	41865602	2	4	160	1	0	0	0	0	0	0	0	1	16940	1306	46	3		3	TYRO3	15	41865602	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1279694	41865602	60665790	864	134692											
TTBK2	146057	broad.mit.edu	37	chr15	43086818	43086818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatccaggaaagacaccaCcaaatgatctgtttaggaca	7	10	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43086818	A	A	43086818	1	1	160	0	1	0	0	0	0	0	0	0	16803	522	18	3		3	TTBK2	15	43086818	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1221216	43086818	59444574	865	134693											
STRC	161497	broad.mit.edu	37	chr15	43901484	43901484	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttactcactgcagattccTgagggtaaggttggtgggta	14	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43901484	A	A	43901484	3	1	160	1	0	0	0	0	1	0	0	0	15446	1579	55	5	1836	5	STRC	15	43901484	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	814666	43901484	58629908	866	134694											
MFAP1	4236	broad.mit.edu	37	chr15	44097385	44097385	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactttgtgttctgggcactCtcttggccccaagctgagtc	10	12	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44097385	T	T	44097385	2	4	160	1	0	0	0	0	0	0	0	1	9606	912	32	4		4	MFAP1	15	44097385	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	195901	44097385	58434007	867	134695											
USP8	9101	broad.mit.edu	37	chr15	50785682	50785682	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaggctgggcatggtgGctcacactggtaatcctagc	13	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50785682	C	C	50785682	1	2	160	0	1	0	0	0	0	0	0	0	17216	1218	42	4		4	USP8	15	50785682	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	6688297	50785682	51745710	868	134696											
C15orf44	81556	broad.mit.edu	37	chr15	65888217	65888217	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctatggaaaagtacattaTtttccatgtattacatttca	4	6	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65888217	C	C	65888217	1	2	160	0	1	0	0	0	0	0	0	0	1811	1508	52	5		5	C15orf44	15	65888217	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	15102535	65888217	36643175	869	134697											
C15orf44	81556	broad.mit.edu	37	chr15	65897427	65897427	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaagcacctcagtggttaaTgttgttaacttagggcaatg	11	7	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65897427	A	A	65897427	1	1	160	0	1	0	0	0	0	0	0	0	1811	1479	51	5		5	C15orf44	15	65897427	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	9210	65897427	36633965	870	134698											
NOX5	79400	broad.mit.edu	37	chr15	69320713	69320713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgacatcgatggtaagggCtcttcctgggtgtgggctgg	16	7	1	1	rs148086918	by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69320713	A	A	69320713	1	1	160	0	1	0	0	0	0	0	0	0	10654	812	28	3		3	NOX5	15	69320713	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3423286	69320713	33210679	871	134699											
NOX5	79400	broad.mit.edu	37	chr15	69328113	69328113	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagtactccaggctcaggCggaggccagccctttccagt	11	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69328113	G	G	69328113	3	3	160	1	0	0	0	0	1	0	0	0	10654	768	27	4	1084	4	NOX5	15	69328113	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	7400	69328113	33203279	872	134700											
NEO1	4756	broad.mit.edu	37	chr15	73552647	73552647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcctagctctcttcacGtacgcccgctcgttactagc	8	15	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73552647	T	T	73552647	3	4	160	1	0	0	0	0	1	0	0	0	10431	1145	40	3	2297	3	NEO1	15	73552647	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4224534	73552647	28978745	873	134701											
HCN4	10021	broad.mit.edu	37	chr15	73617434	73617434	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtccccaggctggaagacctCgaaacgcagcttggtcagca	12	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73617434	G	G	73617434	3	3	160	1	0	0	0	0	1	0	0	0	7065	893	31	4	1783	4	HCN4	15	73617434	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	64787	73617434	28913958	874	134702											
GOLGA6A	342096	broad.mit.edu	37	chr15	74373006	74373006	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttgtctcagggctactgTcagtttttttcttttttgtc	9	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74373006	G	G	74373006	3	3	160	1	0	0	0	0	1	0	0	0	6621	1667	58	5	1994	5	GOLGA6A	15	74373006	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	755572	74373006	28158386	875	134703											
SEMA7A	8482	broad.mit.edu	37	chr15	74709697	74709697	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgacagtatcactggTgtacagctcactctcgcccc	8	15	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74709697	G	G	74709697	3	3	160	1	0	0	0	0	1	0	0	0	14156	1696	59	5	1396	5	SEMA7A	15	74709697	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	336691	74709697	27821695	876	134704											
SEMA7A	8482	broad.mit.edu	37	chr15	74709982	74709982	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctgaagggggcgtagcctCtcatctcgccaagtggcacc	14	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74709982	A	A	74709982	3	1	160	1	0	0	0	0	1	0	0	0	14156	913	32	3	1540	3	SEMA7A	15	74709982	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	285	74709982	27821410	877	134705											
GOLGA6D	653643	broad.mit.edu	37	chr15	75586718	75586718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgagcctggacaacaacGtggagcctgcaccaggagtg	14	10	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75586718	A	A	75586718	3	1	160	1	0	0	0	0	1	0	0	0	6624	1145	40	4	2054	4	GOLGA6D	15	75586718	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	876736	75586718	26944674	878	134706											
MAN2C1	4123	broad.mit.edu	37	chr15	75654347	75654347	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggacggggagcaggcaggCgctcaggccaacccaatccc	14	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75654347	G	G	75654347	1	3	160	0	1	0	0	0	0	0	0	0	9310	783	27	4		4	MAN2C1	15	75654347	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	67629	75654347	26877045	879	134707											
UBE2Q2	92912	broad.mit.edu	37	chr15	76168549	76168549	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagtgtctgggtcagtgCaagcttcagatagacttatg	13	7	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76168549	T	T	76168549	4	4	160	1	0	0	0	0	0	1	0	0	16996	711	25	4	768	4	UBE2Q2	15	76168549	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	514202	76168549	26362843	880	134708											
FSD2	123722	broad.mit.edu	37	chr15	83438669	83438669	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagataagaattcaaccctAaaaactggccaagtggctcc	7	10	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83438669	G	G	83438669	1	3	160	0	1	0	0	0	0	0	0	0	6131	377	13	5		5	FSD2	15	83438669	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	7270120	83438669	19092723	881	134709											
AEN	64782	broad.mit.edu	37	chr15	89172685	89172685	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgggagagtggctggaaggGagggaggcccgcctggcctc	21	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89172685	A	A	89172685	1	1	160	0	1	0	0	0	0	0	0	0	351	1189	41	4		4	AEN	15	89172685	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	5734016	89172685	13358707	882	134710											
SV2B	9899	broad.mit.edu	37	chr15	91835638	91835638	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatggattatgcaaattTggcgccatcctgggaaacac	9	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91835638	C	C	91835638	2	2	160	1	0	0	0	0	0	0	0	1	15536	1809	63	5		5	SV2B	15	91835638	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	2662953	91835638	10695754	883	134711											
CHD2	1106	broad.mit.edu	37	chr15	93485296	93485296	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctactgctgtatttgttgtGatatgtagaagtctttctga	9	5	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93485296	T	T	93485296	1	4	160	0	1	0	0	0	0	0	0	0	3356	1305	45	3		3	CHD2	15	93485296	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1649658	93485296	9046096	884	134712											
WDR24	84219	broad.mit.edu	37	chr16	739444	739444	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaaggcttgcgccccacaCgcaggttcagcttttccacg	11	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	739444	T	T	739444	3	4	160	1	0	0	0	0	1	0	0	0	17408	536	19	4	2211	4	WDR24	16	739444	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08		739444	89615309	885	134713											
KCTD5	54442	broad.mit.edu	37	chr16	2757372	2757372	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaatgatttacgttttcccGagatgtaatgaactgccatg	9	7	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2757372	T	T	2757372	1	4	160	0	1	0	0	0	0	0	0	0	8182	1073	37	3		3	KCTD5	16	2757372	3'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	2017928	2757372	87597381	886	134714											
ROGDI	79641	broad.mit.edu	37	chr16	4847789	4847789	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgttgagccaggggatcaCgcactccactttgtgcacgt	12	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4847789	T	T	4847789	3	4	160	1	0	0	0	0	1	0	0	0	13631	536	19	4	123	4	ROGDI	16	4847789	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2090417	4847789	85506964	887	134715											
A2BP1	54715	broad.mit.edu	37	chr16	7382946	7382946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgggtctatagatttccCcctaactctccattgatgtg	8	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7382946	A	A	7382946	1	1	160	0	1	0	0	0	0	0	0	0	3	638	22	2		2	A2BP1	16	7382946	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2535157	7382946	82971807	888	134716											
NOMO2	283820	broad.mit.edu	37	chr16	18543048	18543048	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattttgaaggccaaaggtTcgtttccaggccaattttac	9	8	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18543048	G	G	18543048	1	3	160	0	1	0	0	0	0	0	0	0	10627	1798	62	5		5	NOMO2	16	18543048	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	11160102	18543048	71811705	889	134717											
TMC5	79838	broad.mit.edu	37	chr16	19475097	19475097	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttgaatcctgattccaGgcttatcggagatccaagaa	9	9	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19475097	T	T	19475097	5	4	160	1	0	0	0	0	0	0	1	0	16111	1014	35	2	1572	2	TMC5	16	19475097	Splice_Site	SNP	G	TCGA-50-5933-01A-11D-1753-08	932049	19475097	70879656	890	134718											
PDILT	204474	broad.mit.edu	37	chr16	20380924	20380924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaagtttaggatttggaCggatgggatatcgacctctg	13	7	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20380924	A	A	20380924	3	1	160	1	0	0	0	0	1	0	0	0	11768	536	19	3	768	3	PDILT	16	20380924	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	905827	20380924	69973829	891	134719											
ACSM2B	348158	broad.mit.edu	37	chr16	20554527	20554527	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttcatctttgattccccGgtctccaaggagccaaaagt	7	12	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20554527	A	A	20554527	3	1	160	1	0	0	0	0	1	0	0	0	184	1115	39	4	410	4	ACSM2B	16	20554527	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	173603	20554527	69800226	892	134720											
ACSM2B	348158	broad.mit.edu	37	chr16	20565059	20565059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaacgtcttcatgcctGgtcatgcaattctctgtaga	8	10	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20565059	T	T	20565059	1	4	160	0	1	0	0	0	0	0	0	0	184	1363	47	2		2	ACSM2B	16	20565059	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	10532	20565059	69789694	893	134721											
ACSM2B	348158	broad.mit.edu	37	chr16	20566759	20566759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaacctatacagtatgtcaGtggatttcatctggatggtt	10	7	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20566759	T	T	20566759	3	4	160	1	0	0	0	0	1	0	0	0	184	1029	36	3	1349	3	ACSM2B	16	20566759	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1700	20566759	69787994	894	134722											
ERN2	10595	broad.mit.edu	37	chr16	23718184	23718184	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggcatcctgcttccggccTgtggaggtggaaagtgtgtt	15	9	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23718184	A	A	23718184	5	1	160	1	0	0	0	0	0	0	1	0	5280	1594	55	5	2470	5	ERN2	16	23718184	Splice_Site	SNP	T	TCGA-50-5933-01A-11D-1753-08	3151425	23718184	66636569	895	134723											
KIAA0556	23247	broad.mit.edu	37	chr16	27751301	27751301	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttggtatcttcgacttccAaaatttcatacatcagtctg	5	9	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27751301	C	C	27751301	1	2	160	0	1	0	0	0	0	0	0	0	8253	145	5	5		5	KIAA0556	16	27751301	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	4033117	27751301	62603452	896	134724											
ATXN2L	11273	broad.mit.edu	37	chr16	28842280	28842280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaaaccaaaCaggcccttcccgcatgtccc	4	13	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28842280	A	A	28842280	1	1	160	0	1	0	0	0	0	0	0	0	1216	493	17	3		3	ATXN2L	16	28842280	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1090979	28842280	61512473	897	134725											
SEZ6L2	26470	broad.mit.edu	37	chr16	29907150	29907150	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggagactccacatacccTtcgccctcggagatgttgtt	9	13	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29907150	A	A	29907150	3	1	160	1	0	0	0	0	1	0	0	0	14257	1606	56	5	2288	5	SEZ6L2	16	29907150	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	1064870	29907150	60447603	898	134726											
PRSS53	339105	broad.mit.edu	37	chr16	31097227	31097230	+	Intron	DEL	CTAA	-	-													cctatgccagttctctagtcCtaactgaggtttgcttcaca							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31097230	-	-	31097227	6	5	160	0	1	1	0	1	0	0	0	0	12738	696	24	0		0	PRSS53	16	31097227	Intron	DEL	CTAA	TCGA-50-5933-01A-11D-1753-08	1190077	31097227	59257526	899	134727											
TRIM72	493829	broad.mit.edu	37	chr16	31234185	31234185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtctcccccacccgccCgtctggacatccagctgcca	8	20	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31234185	A	A	31234185	3	1	160	1	0	0	0	0	1	0	0	0	16670	652	23	1	796	1	TRIM72	16	31234185	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	136958	31234185	59120568	900	134728											
ZNF267	10308	broad.mit.edu	37	chr16	31927756	31927756	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaagcctttaactctaggtCatacctcattgcacatcaga	5	12	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31927756	T	T	31927756	3	4	160	1	0	0	0	0	1	0	0	0	17932	838	29	4	2200	4	ZNF267	16	31927756	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	693571	31927756	58426997	901	134729											
ORC6L	23594	broad.mit.edu	37	chr16	46729468	46729468	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaacttatgaaattgttTtgtaggattctaaagctgaa	8	4	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46729468	C	C	46729468	1	2	160	0	1	0	0	0	0	0	0	0	11360	1856	64	5		5	ORC6L	16	46729468	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	14801712	46729468	43625285	902	134730											
ITFG1	81533	broad.mit.edu	37	chr16	47196406	47196406	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatacttaaatagtgaaTattaaaacatagattaattg	4	2	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47196406	C	C	47196406	1	2	160	0	1	0	0	0	0	0	0	0	7939	1421	49	5		5	ITFG1	16	47196406	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	466938	47196406	43158347	903	134731											
ABCC12	94160	broad.mit.edu	37	chr16	48139179	48139179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacccactggtacacatgCtgaccgatgtctgccagcac	8	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48139179	A	A	48139179	3	1	160	1	0	0	0	0	1	0	0	0	52	796	28	3	1579	3	ABCC12	16	48139179	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	942773	48139179	42215574	904	134732											
C16orf78	123970	broad.mit.edu	37	chr16	49433159	49433159	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatagatgctaaaaaggtGttcaccggaatacccagcat	9	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49433159	T	T	49433159	2	4	160	1	0	0	0	0	0	0	0	1	1849	1364	48	3		3	C16orf78	16	49433159	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	1293980	49433159	40921594	905	134733											
SALL1	6299	broad.mit.edu	37	chr16	51171014	51171014	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgctatgtctccagccCgagctgctttaactcgtgac	9	12	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51171014	G	G	51171014	1	3	160	0	1	0	0	0	0	0	0	0	13921	667	23	4		4	SALL1	16	51171014	3'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	1737855	51171014	39183739	906	134734											
SLC6A2	6530	broad.mit.edu	37	chr16	55703372	55703372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtcgcctttggaaacagCcagctgagcagacgcccagg	13	14	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55703372	A	A	55703372	1	1	160	0	1	0	0	0	0	0	0	0	14797	754	26	3		3	SLC6A2	16	55703372	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4532358	55703372	34651381	907	134735											
SLC6A2	6530	broad.mit.edu	37	chr16	55730144	55730144	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttcttacaggagctggCctagtgttcatcctgtatcc	9	10	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55730144	A	A	55730144	2	1	160	1	0	0	0	0	0	0	0	1	14797	726	26	3		3	SLC6A2	16	55730144	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	26772	55730144	34624609	908	134736											
CES1	1066	broad.mit.edu	37	chr16	55844547	55844547	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctaagtatttctcagtGgcttctggaatcagttcctt	7	11	3	0	rs145477234		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55844547	T	T	55844547	2	4	160	1	0	0	0	0	0	0	0	1	3299	1335	47	2		2	CES1	16	55844547	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	114403	55844547	34510206	909	134737											
CES1	1066	broad.mit.edu	37	chr16	55860280	55860280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttctacggcagcgccttGgactgggaggtttaagcctg	14	9	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55860280	T	T	55860280	1	4	160	0	1	0	0	0	0	0	0	0	3299	1363	47	2		2	CES1	16	55860280	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	15733	55860280	34494473	910	134738											
SLC12A3	6559	broad.mit.edu	37	chr16	56920205	56920205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accattcagggagcctgggaGgtgcctttcgcacccagacc	12	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56920205	T	T	56920205	1	4	160	0	1	0	0	0	0	0	0	0	14497	1015	35	2		2	SLC12A3	16	56920205	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1059925	56920205	33434548	911	134739											
NLRC5	84166	broad.mit.edu	37	chr16	57076012	57076012	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagagcctctgaggctgGggcagggggggagcattctc	19	9	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57076012	A	A	57076012	1	1	160	0	1	0	0	0	0	0	0	0	10565	1247	43	4		4	NLRC5	16	57076012	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	155807	57076012	33278741	912	134740											
CPNE2	221184	broad.mit.edu	37	chr16	57144694	57144694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgccccagcagcggggGcagcccccatgggcccccag	17	17	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57144694	T	T	57144694	3	4	160	1	0	0	0	0	1	0	0	0	3844	1203	42	3	42	3	CPNE2	16	57144694	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	68682	57144694	33210059	913	134741											
CCDC113	29070	broad.mit.edu	37	chr16	58287831	58287831	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcaggtcagaggatcattCtgatgcctatcttgggctgg	13	8	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58287831	T	T	58287831	1	4	160	0	1	0	0	0	0	0	0	0	2776	928	32	4		4	CCDC113	16	58287831	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1143137	58287831	32066922	914	134742											
CNOT1	23019	broad.mit.edu	37	chr16	58619201	58619201	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagaattacatcatgtttgGcacaagaataatcagaagct	7	6	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58619201	C	C	58619201	1	2	160	0	1	0	0	0	0	0	0	0	3649	1218	42	4		4	CNOT1	16	58619201	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	331370	58619201	31735552	915	134743											
CDH11	1009	broad.mit.edu	37	chr16	65016031	65016031	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagctgcattttcttggacTtcgtggatgtaacttggggc	13	8	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65016031	A	A	65016031	3	1	160	1	0	0	0	0	1	0	0	0	3127	1606	56	5	1241	5	CDH11	16	65016031	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	6396830	65016031	25338722	916	134744											
CDH5	1003	broad.mit.edu	37	chr16	66429973	66429973	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgggcagatactccatccGcaggaccagtgacaagggcc	12	14	0	2	rs139755397	byFrequency;by1000genomes	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66429973	A	A	66429973	3	1	160	1	0	0	0	0	1	0	0	0	3143	1087	38	4	1255	4	CDH5	16	66429973	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1413942	66429973	23924780	917	134745											
TMED6	146456	broad.mit.edu	37	chr16	69377433	69377433	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcgaccaccagttcacGtagttatagtttgattggat	10	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69377433	A	A	69377433	2	1	160	1	0	0	0	0	0	0	0	1	16131	1140	40	4		4	TMED6	16	69377433	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2947460	69377433	20977320	918	134746											
CNTNAP4	85445	broad.mit.edu	37	chr16	76350441	76350441	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtctgcttttctcctcTgactggcccatagaaaatct	7	11	4	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76350441	A	A	76350441	1	1	160	0	1	0	0	0	0	0	0	0	3681	1595	55	5		5	CNTNAP4	16	76350441	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	6973008	76350441	14004312	919	134747											
CDH13	1012	broad.mit.edu	37	chr16	83711897	83711897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtacccgacgtctcctacGgccccagctccacagccacc	7	21	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83711897	T	T	83711897	3	4	160	1	0	0	0	0	1	0	0	0	3129	1116	39	1	1407	1	CDH13	16	83711897	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	7361456	83711897	6642856	920	134748											
SPG7	6687	broad.mit.edu	37	chr16	89612990	89612990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttggggaccccccccccCcacagacaaacatgccgcac	7	20	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89612990	A	A	89612990	1	1	160	0	1	0	0	0	0	0	0	0	15162	638	22	2		2	SPG7	16	89612990	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5901093	89612990	741763	921	134749											
SPNS3	201305	broad.mit.edu	37	chr17	4349456	4349456	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagggaccagcgcacccgCgtgctggctgtcttctacat	13	13	2	1	rs146044768		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4349456	T	T	4349456	2	4	160	1	0	0	0	0	0	0	0	1	15194	755	27	4		4	SPNS3	17	4349456	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08		4349456	76845754	922	134750											
ARRB2	409	broad.mit.edu	37	chr17	4623803	4623803	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccaagccctcagagggaGggcctgaagcagggccagtg	15	13	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4623803	T	T	4623803	1	4	160	0	1	0	0	0	0	0	0	0	985	1015	35	2		2	ARRB2	17	4623803	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	274347	4623803	76571407	923	134751											
CLDN7	1366	broad.mit.edu	37	chr17	7164150	7164150	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggggctcacctgccacgatGaaaattatgcctccacccat	9	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7164150	A	A	7164150	2	1	160	1	0	0	0	0	0	0	0	1	3522	1281	45	4		4	CLDN7	17	7164150	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2540347	7164150	74031060	924	134752											
SPEM1	374768	broad.mit.edu	37	chr17	7324723	7324723	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcccagctcccaccctGggcccagcagtcatccctga	8	20	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7324723	T	T	7324723	2	4	160	1	0	0	0	0	0	0	0	1	15155	1335	47	2		2	SPEM1	17	7324723	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	160573	7324723	73870487	925	134753											
CD68	968	broad.mit.edu	37	chr17	7483066	7483066	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggaggaaggaggctgagGggagggggcccctgggaggg	24	5	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7483066	A	A	7483066	1	1	160	0	1	0	0	0	0	0	0	0	3060	1247	43	4		4	CD68	17	7483066	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	158343	7483066	73712144	926	134754											
TP53	7157	broad.mit.edu	37	chr17	7578290	7578290	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgaggaggggccagacCtaagagcaatcagtgaggaa	15	7	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578290	A	A	7578290	5	1	160	1	0	0	0	0	0	0	1	0	16505	695	24	2	735	2	TP53	17	7578290	Splice_Site	SNP	C	TCGA-50-5933-01A-11D-1753-08	95224	7578290	73616920	927	134755											
TP53	7157	broad.mit.edu	37	chr17	7578457	7578457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtagatggccatggcgCggacgcgggtgccgggcggg	21	10	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578457	A	A	7578457	3	1	160	1	0	0	0	0	1	0	0	0	16505	768	27	3	825	3	TP53	17	7578457	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	167	7578457	73616753	928	134756											
DNAH2	146754	broad.mit.edu	37	chr17	7673701	7673701	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggagatctctgcttcagCaactaaagagctggctatag	12	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7673701	T	T	7673701	3	4	160	1	0	0	0	0	1	0	0	0	4642	710	25	4	4167	4	DNAH2	17	7673701	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	95244	7673701	73521509	929	134757											
PER1	5187	broad.mit.edu	37	chr17	8047130	8047130	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagggttctggtggtggcgTgagcgcttggctttggatcg	19	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8047130	G	G	8047130	2	3	160	1	0	0	0	0	0	0	0	1	11823	1683	59	5		5	PER1	17	8047130	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	373429	8047130	73148080	930	134758											
WDR16	146845	broad.mit.edu	37	chr17	9536125	9536125	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accactcaccaggcctgcctCtccttagtgaggccagcaga	9	16	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9536125	G	G	9536125	1	3	160	0	1	0	0	0	0	0	0	0	17403	928	32	4		4	WDR16	17	9536125	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1488995	9536125	71659085	931	134759											
MYH8	4626	broad.mit.edu	37	chr17	10303865	10303865	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttcttccgaagagcagCcaccatagcttcatgctgca	9	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10303865	A	A	10303865	3	1	160	1	0	0	0	0	1	0	0	0	10135	739	26	3	2292	3	MYH8	17	10303865	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	767740	10303865	70891345	932	134760											
MYH4	4622	broad.mit.edu	37	chr17	10348286	10348286	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaattgagtgaagttgtggaGacctaccctggcctccagtt	12	9	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10348286	T	T	10348286	1	4	160	0	1	0	0	0	0	0	0	0	10131	957	33	3		3	MYH4	17	10348286	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	44421	10348286	70846924	933	134761											
DNAH9	1770	broad.mit.edu	37	chr17	11700911	11700911	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattcctgtgtctcatcacCaggatattgaagaccctgtg	8	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11700911	T	T	11700911	1	4	160	0	1	0	0	0	0	0	0	0	4648	609	21	4		4	DNAH9	17	11700911	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1352625	11700911	69494299	934	134762											
ALKBH5	54890	broad.mit.edu	37	chr17	18110315	18110315	+	Intron	DEL	G	-	-													taggaccctcagcaaaggctGgcaaaggcctggctgcaggg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18110315	-	-	18110315	6	5	160	0	1	1	0	1	0	0	0	0	530	1363	47	0		0	ALKBH5	17	18110315	Intron	DEL	G	TCGA-50-5933-01A-11D-1753-08	6409404	18110315	63084895	935	134763											
NOS2	4843	broad.mit.edu	37	chr17	26116039	26116039	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttagagtggggaaggatcTatgggtggccacacagggca	16	7	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26116039	A	A	26116039	1	1	160	0	1	0	0	0	0	0	0	0	10638	1537	53	5		5	NOS2	17	26116039	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	8005724	26116039	55079171	936	134764											
TMEM97	27346	broad.mit.edu	37	chr17	26652401	26652401	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagccagctggacatgccAtctgctgccggggtagtggg	15	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26652401	G	G	26652401	1	3	160	0	1	0	0	0	0	0	0	0	16347	232	8	5		5	TMEM97	17	26652401	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	536362	26652401	54542809	937	134765											
SLC13A2	9058	broad.mit.edu	37	chr17	26821004	26821004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaccccaagcggctaacCcagccctccccgcgccccct	7	23	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26821004	A	A	26821004	1	1	160	0	1	0	0	0	0	0	0	0	14505	638	22	2		2	SLC13A2	17	26821004	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	168603	26821004	54374206	938	134766											
SUPT6H	6830	broad.mit.edu	37	chr17	27000440	27000440	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtctgattttgtggaaagCgaggctgaggagtcagagga	16	4	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27000440	T	T	27000440	2	4	160	1	0	0	0	0	0	0	0	1	15518	767	27	4		4	SUPT6H	17	27000440	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	179436	27000440	54194770	939	134767											
EVI2B	2124	broad.mit.edu	37	chr17	29631504	29631504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgagacagtccagagatGgagggagactagtagaatca	14	5	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29631504	T	T	29631504	3	4	160	1	0	0	0	0	1	0	0	0	5330	1348	47	2	226	2	EVI2B	17	29631504	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2631064	29631504	51563706	940	134768											
CCL1	6346	broad.mit.edu	37	chr17	32690054	32690054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccccagagtggctgacCacgtttctgccctccccaga	8	18	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32690054	A	A	32690054	1	1	160	0	1	0	0	0	0	0	0	0	2910	609	21	2		2	CCL1	17	32690054	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3058550	32690054	48505156	941	134769											
C17orf102	400591	broad.mit.edu	37	chr17	32905960	32905960	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaataaataggtttcccaCagctgcgccccggacccatc	8	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32905960	G	G	32905960	3	3	160	1	0	0	0	0	1	0	0	0	1863	478	17	4	171	4	C17orf102	17	32905960	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	215906	32905960	48289250	942	134770											
CCT6B	10693	broad.mit.edu	37	chr17	33256051	33256051	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctgctgctaccattggctCacctgaaaagtaaaaacaat	6	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33256051	A	A	33256051	4	1	160	1	0	0	0	0	0	1	0	0	2988	835	29	3	147	3	CCT6B	17	33256051	Nonsense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	350091	33256051	47939159	943	134771											
ACACA	31	broad.mit.edu	37	chr17	35486404	35486404	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagaggaactgaactgTgcacgctctaaaaggagatt	11	7	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35486404	A	A	35486404	3	1	160	1	0	0	0	0	1	0	0	0	106	1696	59	5	1360	5	ACACA	17	35486404	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	2230353	35486404	45708806	944	134772											
KRTAP4-3	85290	broad.mit.edu	37	chr17	39324300	39324300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggaaatgcagcagctgGggcggcagcaggtggtcctg	17	9	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39324300	T	T	39324300	3	4	160	1	0	0	0	0	1	0	0	0	8624	1232	43	2	466	2	KRTAP4-3	17	39324300	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3837896	39324300	41870910	945	134773											
KRT38	8687	broad.mit.edu	37	chr17	39594374	39594374	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctttccagaaggttccgGtacgtggcaatctcattctc	9	12	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39594374	T	T	39594374	4	4	160	1	0	0	0	0	0	1	0	0	8546	1256	44	3	166	3	KRT38	17	39594374	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	270074	39594374	41600836	946	134774											
STAT5B	6777	broad.mit.edu	37	chr17	40359680	40359680	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcaagtctcccaagcggTcggctagggaccgaatggag	13	10	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40359680	C	C	40359680	3	2	160	1	0	0	0	0	1	0	0	0	15387	1667	58	5	406	5	STAT5B	17	40359680	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	765306	40359680	40835530	947	134775											
COASY	80347	broad.mit.edu	37	chr17	40716788	40716788	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactggcatcagtggctctgGgaagagctcaatagctcagc	13	10	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40716788	A	A	40716788	3	1	160	1	0	0	0	0	1	0	0	0	3684	1232	43	4	1214	4	COASY	17	40716788	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	357108	40716788	40478422	948	134776											
CNTNAP1	8506	broad.mit.edu	37	chr17	40835871	40835871	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagctggtgggtcccctgTatgcacgctccctgggcgcc	15	14	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40835871	C	C	40835871	3	2	160	1	0	0	0	0	1	0	0	0	3678	1638	57	5	106	5	CNTNAP1	17	40835871	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	119083	40835871	40359339	949	134777											
DHX8	1659	broad.mit.edu	37	chr17	41561531	41561531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagctggacaatcacttGgggatcaacgacaaggacct	11	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41561531	T	T	41561531	3	4	160	1	0	0	0	0	1	0	0	0	4555	1339	47	2	128	2	DHX8	17	41561531	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	725660	41561531	39633679	950	134778											
HOXB3	3213	broad.mit.edu	37	chr17	46628225	46628225	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggctggagatgggccccccGacgacgaggccaatcccttg	14	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46628225	T	T	46628225	4	4	160	1	0	0	0	0	0	1	0	0	7369	1059	37	3	532	3	HOXB3	17	46628225	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5066694	46628225	34566985	951	134779											
SLC35B1	10237	broad.mit.edu	37	chr17	47778717	47778717	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttattttattaaaaaagacTggaactcagtcccatattcc	4	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47778717	A	A	47778717	1	1	160	0	1	0	0	0	0	0	0	0	14689	1595	55	5		5	SLC35B1	17	47778717	3'UTR	SNP	T	TCGA-50-5933-01A-11D-1753-08	1150492	47778717	33416493	952	134780											
KIF2B	84643	broad.mit.edu	37	chr17	51902186	51902187	+	Frame_Shift_Ins	INS	-	T	T													gcagaaagagattgaagaggINSttgaaacattacccactctg							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51902187	T	T	51902186	7	5	160	1	0	1	1	0	0	0	0	0	8368	1261	44	0	1794	0	KIF2B	17	51902186	Frame_Shift_Ins	INS	-	TCGA-50-5933-01A-11D-1753-08	4123469	51902186	29293024	953	134781											
TEX14	56155	broad.mit.edu	37	chr17	56738345	56738345	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctcaatctcttctaagcTgatatcaatccacctctgaa	4	13	5	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56738345	A	A	56738345	1	1	160	0	1	0	0	0	0	0	0	0	15900	1595	55	5		5	TEX14	17	56738345	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	4836159	56738345	24456865	954	134782											
CLTC	1213	broad.mit.edu	37	chr17	57762458	57762458	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttatgacaactttgacaaTatctcgcttgctcagcgttt	7	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57762458	C	C	57762458	2	2	160	1	0	0	0	0	0	0	0	1	3598	1403	49	5		5	CLTC	17	57762458	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	1024113	57762458	23432752	955	134783											
TMEM49	81671	broad.mit.edu	37	chr17	57917156	57917156	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actggttgtcctggatgtttGaaaagttggtcgttgtcatg	13	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57917156	C	C	57917156	3	2	160	1	0	0	0	0	1	0	0	0	16296	1291	45	4	1147	4	TMEM49	17	57917156	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	154698	57917156	23278054	956	134784											
BCAS3	54828	broad.mit.edu	37	chr17	58786659	58786659	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgattatgattggctacagTgatggaatgcaggtctggag	14	4	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58786659	C	C	58786659	2	2	160	1	0	0	0	0	0	0	0	1	1357	1693	59	5		5	BCAS3	17	58786659	Silent	SNP	T	TCGA-50-5933-01A-11D-1753-08	869503	58786659	22408551	957	134785											
APOH	350	broad.mit.edu	37	chr17	64216930	64216930	+	Intron	DEL	A	-	-													aatatactctttccagaaagAaaaaaaaaaccctaaggata					rs78195703		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64216930	-	-	64216930	6	5	160	0	1	1	0	1	0	0	0	0	806	261	9	0		0	APOH	17	64216930	Intron	DEL	A	TCGA-50-5933-01A-11D-1753-08	5430271	64216930	16978280	958	134786											
CACNG4	27092	broad.mit.edu	37	chr17	65014413	65014414	+	Intron	DNP	TC	CT	CT													gtgtcaggaggcctggactcTctttctgtggggaggcggaa							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	65014414	CT	CT	65014413	1	2	160	0	1	0	0	0	0	0	0	0	2585	1566	54	5		5	CACNG4	17	65014413	Intron	DNP	TC	TCGA-50-5933-01A-11D-1753-08	797483	65014413	16180797	959	134787											
WIPI1	55062	broad.mit.edu	37	chr17	66440705	66440705	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taatgttgtgaatataaatgGactcttctaggcaaaccagc	8	7	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66440705	A	A	66440705	3	1	160	1	0	0	0	0	1	0	0	0	17497	1174	41	4	1021	4	WIPI1	17	66440705	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1426292	66440705	14754505	960	134788											
ABCA8	10351	broad.mit.edu	37	chr17	66880041	66880041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctaggaataaagagagaTgcacaattagaaacataaaa	9	4	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66880041	C	C	66880041	1	2	160	0	1	0	0	0	0	0	0	0	38	1479	51	5		5	ABCA8	17	66880041	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	439336	66880041	14315169	961	134789											
FDXR	2232	broad.mit.edu	37	chr17	72858840	72858840	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccaagccagggccggcCgggatcagcagaggtgcaaa	15	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72858840	A	A	72858840	1	1	160	0	1	0	0	0	0	0	0	0	5864	667	23	1		1	FDXR	17	72858840	3'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	5978799	72858840	8336370	962	134790											
C17orf28	283987	broad.mit.edu	37	chr17	72954520	72954520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgcaccccgaagttccgctCcccgctcagaagcagcaaga	9	18	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72954520	T	T	72954520	3	4	160	1	0	0	0	0	1	0	0	0	1869	864	30	4	1108	4	C17orf28	17	72954520	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	95680	72954520	8240690	963	134791											
NUP85	79902	broad.mit.edu	37	chr17	73229160	73229160	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgggccctgcaggttcctcAgggattactgtgagcgaggc	15	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73229160	G	G	73229160	3	3	160	1	0	0	0	0	1	0	0	0	10865	179	7	5	1584	5	NUP85	17	73229160	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	274640	73229160	7966050	964	134792											
KIAA0195	9772	broad.mit.edu	37	chr17	73467940	73467940	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggggaggagccttcctttCaggggtgaccacattcatct	12	11	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73467940	T	T	73467940	1	4	160	0	1	0	0	0	0	0	0	0	8230	841	29	4		4	KIAA0195	17	73467940	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	238780	73467940	7727270	965	134793											
RHBDF2	79651	broad.mit.edu	37	chr17	74473863	74473863	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtggcatccagcaccgagCgcccctgtgcacgggcagag	15	15	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74473863	T	T	74473863	3	4	160	1	0	0	0	0	1	0	0	0	13429	768	27	4	1858	4	RHBDF2	17	74473863	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1005923	74473863	6721347	966	134794											
ENPP7	339221	broad.mit.edu	37	chr17	77709478	77709478	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatccatggggtgagtcgcCtgctggaggcaccacctcca	12	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77709478	T	T	77709478	1	4	160	0	1	0	0	0	0	0	0	0	5177	696	24	4		4	ENPP7	17	77709478	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	3235615	77709478	3485732	967	134795											
NARF	26502	broad.mit.edu	37	chr17	80436675	80436675	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatcccttctctccccaGgctgggtccgatacgccgag	12	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80436675	T	T	80436675	5	4	160	1	0	0	0	0	0	0	1	0	10261	1014	35	2	542	2	NARF	17	80436675	Splice_Site	SNP	G	TCGA-50-5933-01A-11D-1753-08	2727197	80436675	758535	968	134796											
USP14	9097	broad.mit.edu	37	chr18	196747	196747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgccgagaaaggtgaaCaaggacagtatcttcaacag	11	7	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196747	A	A	196747	3	1	160	1	0	0	0	0	1	0	0	0	17171	479	17	3	600	3	USP14	18	196747	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08		196747	77880501	969	134797											
EMILIN2	84034	broad.mit.edu	37	chr18	2913094	2913094	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggctccttatgatgggcgcTacctgatcacggccaccctc	10	16	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2913094	A	A	2913094	3	1	160	1	0	0	0	0	1	0	0	0	5136	1522	53	5	2884	5	EMILIN2	18	2913094	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	2716347	2913094	75164154	970	134798											
DLGAP1	9229	broad.mit.edu	37	chr18	3534268	3534268	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatgcggtctcgctctgcCtggagaagcttcaggaacca	11	13	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3534268	T	T	3534268	2	4	160	1	0	0	0	0	0	0	0	1	4599	680	24	4		4	DLGAP1	18	3534268	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	621174	3534268	74542980	971	134799											
EPB41L3	23136	broad.mit.edu	37	chr18	5434024	5434024	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatagtctccgagctctgaCtggacagtgtaggagcccag	12	11	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5434024	T	T	5434024	2	4	160	1	0	0	0	0	0	0	0	1	5196	564	20	4		4	EPB41L3	18	5434024	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	1899756	5434024	72643224	972	134800											
CIDEA	1149	broad.mit.edu	37	chr18	12262964	12262964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctgcaggagctcatcaGcaaggtgccccacatcccgc	10	17	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12262964	T	T	12262964	3	4	160	1	0	0	0	0	1	0	0	0	3456	971	34	3	329	3	CIDEA	18	12262964	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	6828940	12262964	65814284	973	134801											
RNMT	8731	broad.mit.edu	37	chr18	13731883	13731883	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcttctactggagatggcActcaaaataagagaaaaata	7	6	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13731883	T	T	13731883	3	4	160	1	0	0	0	0	1	0	0	0	13617	159	6	5	369	5	RNMT	18	13731883	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	1468919	13731883	64345365	974	134802											
ANKRD30B	374860	broad.mit.edu	37	chr18	14784420	14784420	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactatgtactttgtgaagTacacattctttattgatcat	5	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14784420	C	C	14784420	1	2	160	0	1	0	0	0	0	0	0	0	659	1653	57	5		5	ANKRD30B	18	14784420	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1052537	14784420	63292828	975	134803											
CHST9	83539	broad.mit.edu	37	chr18	24524215	24524215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagctaacattaccccctGccttttttatatttacacat	2	12	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24524215	T	T	24524215	1	4	160	0	1	0	0	0	0	0	0	0	3442	1334	46	3		3	CHST9	18	24524215	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	9739795	24524215	53553033	976	134804											
DSC3	1825	broad.mit.edu	37	chr18	28612110	28612110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatcatgctctttccagcCtatgtaaactaaatttctgc	4	10	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28612110	A	A	28612110	1	1	160	0	1	0	0	0	0	0	0	0	4807	696	24	2		2	DSC3	18	28612110	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4087895	28612110	49465138	977	134805											
C18orf34	374864	broad.mit.edu	37	chr18	30672588	30672588	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggttgatataaatatacaAcaaaactacacagagaaaat	5	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30672588	G	G	30672588	1	3	160	0	1	0	0	0	0	0	0	0	1920	58	2	5		5	C18orf34	18	30672588	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2060478	30672588	47404660	978	134806											
ZNF396	252884	broad.mit.edu	37	chr18	32954025	32954025	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccggcctcagccagagatGacaaagttcccagagccggc	11	14	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32954025	A	A	32954025	3	1	160	1	0	0	0	0	1	0	0	0	18009	1290	45	4	785	4	ZNF396	18	32954025	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2281437	32954025	45123223	979	134807											
ELP2	55250	broad.mit.edu	37	chr18	33751061	33751061	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagatttgcttatatacctgGaaaaagactgatcaagttcc	7	7	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33751061	C	C	33751061	3	2	160	1	0	0	0	0	1	0	0	0	5122	1183	41	4	2344	4	ELP2	18	33751061	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	797036	33751061	44326187	980	134808											
CELF4	56853	broad.mit.edu	37	chr18	34854503	34854503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctgcgcccaccccgcCcgctcctcggggcgctttgg	13	20	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34854503	A	A	34854503	1	1	160	0	1	0	0	0	0	0	0	0	3248	638	22	2		2	CELF4	18	34854503	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1103442	34854503	43222745	981	134809											
PIK3C3	5289	broad.mit.edu	37	chr18	39570474	39570474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggttgaatttcgatgtGtcaagtgtgatgataaggaa	13	2	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39570474	T	T	39570474	3	4	160	1	0	0	0	0	1	0	0	0	12007	1377	48	3	692	3	PIK3C3	18	39570474	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4715971	39570474	38506774	982	134810											
SLC14A1	6563	broad.mit.edu	37	chr18	43310394	43310395	+	Missense_Mutation	DNP	TA	CT	CT													gcttccccaaagctcttggcTatgtcaccggtgacatgaaa							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	43310395	CT	CT	43310394	3	2	160	1	0	0	0	0	1	0	0	0	14509	1522	53	5	283	5	SLC14A1	18	43310394	Missense_Mutation	DNP	TA	TCGA-50-5933-01A-11D-1753-08	3739920	43310394	34766854	983	134811											
TCEB3B	51224	broad.mit.edu	37	chr18	44561625	44561625	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgtgcagcgtagtggacCctgccgccatctcaccagag	12	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44561625	T	T	44561625	3	4	160	1	0	0	0	0	1	0	0	0	15804	623	22	4	2254	4	TCEB3B	18	44561625	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1251231	44561625	33515623	984	134812											
NEDD4L	23327	broad.mit.edu	37	chr18	56033381	56033381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaggtcttgactatgggGgtgtggccagagaatggttc	16	5	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56033381	T	T	56033381	3	4	160	1	0	0	0	0	1	0	0	0	10406	1232	43	2	2094	2	NEDD4L	18	56033381	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	11471756	56033381	22043867	985	134813											
ZNF532	55205	broad.mit.edu	37	chr18	56621091	56621091	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggcactggactggcaagCttccaagatgtgggctcttg	15	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56621091	A	A	56621091	1	1	160	0	1	0	0	0	0	0	0	0	18099	812	28	3		3	ZNF532	18	56621091	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	587710	56621091	21456157	986	134814											
KIAA1468	57614	broad.mit.edu	37	chr18	59855222	59855222	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccggcgttgggggcgctGgaggtcgggaaccgagtaca	19	10	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59855222	T	T	59855222	4	4	160	1	0	0	0	0	0	1	0	0	8306	1349	47	2	486	2	KIAA1468	18	59855222	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3234131	59855222	18222026	987	134815											
KIAA1468	57614	broad.mit.edu	37	chr18	59888679	59888679	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcaatgaatttttattgaaGaataactataagcttacatc	5	5	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59888679	T	T	59888679	3	4	160	1	0	0	0	0	1	0	0	0	8306	933	33	3	825	3	KIAA1468	18	59888679	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	33457	59888679	18188569	988	134816											
SERPINB8	5271	broad.mit.edu	37	chr18	61645624	61645624	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggacaactcaagaaacGtattcttctctcccatgagc	7	11	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61645624	A	A	61645624	3	1	160	1	0	0	0	0	1	0	0	0	14220	1145	40	4	84	4	SERPINB8	18	61645624	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1756945	61645624	16431624	989	134817											
CTDP1	9150	broad.mit.edu	37	chr18	77464788	77464788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctttcacttccagctgGgccggggtgagcccatgctg	13	13	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77464788	T	T	77464788	3	4	160	1	0	0	0	0	1	0	0	0	4036	1232	43	2	661	2	CTDP1	18	77464788	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	15819164	77464788	612460	990	134818											
SHC2	25759	broad.mit.edu	37	chr19	440980	440980	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatcggaacccccgcagtgGagccacgtcccttttcccag	9	18	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	440980	A	A	440980	1	1	160	0	1	0	0	0	0	0	0	0	14384	1189	41	4		4	SHC2	19	440980	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08		440980	58688003	991	134819											
ABCA7	10347	broad.mit.edu	37	chr19	1055931	1055931	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agactaagaagtgggtgaatGaggtcaggtgaggaggggtc	19	3	1	5			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1055931	A	A	1055931	3	1	160	1	0	0	0	0	1	0	0	0	37	1291	45	4	4349	4	ABCA7	19	1055931	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	614951	1055931	58073052	992	134820											
TMPRSS9	360200	broad.mit.edu	37	chr19	2410317	2410317	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccaggcactgtgtgcCagcttgtacggccattcact	11	13	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2410317	T	T	2410317	2	4	160	1	0	0	0	0	0	0	0	1	16376	581	21	4		4	TMPRSS9	19	2410317	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	1354386	2410317	56718666	993	134821											
NFIC	4782	broad.mit.edu	37	chr19	3433537	3433537	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacgaccgacttccaggagaGctttgtcacctccggcgtgt	11	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3433537	C	C	3433537	3	2	160	1	0	0	0	0	1	0	0	0	10467	971	34	4	677	4	NFIC	19	3433537	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1023220	3433537	55695446	994	134822											
EBI3	10148	broad.mit.edu	37	chr19	4231316	4231316	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgtccttcattgccacgTacaggtcggagagcctggaa	12	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4231316	A	A	4231316	3	1	160	1	0	0	0	0	1	0	0	0	4923	1638	57	5	202	5	EBI3	19	4231316	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	797779	4231316	54897667	995	134823											
PTPRS	5802	broad.mit.edu	37	chr19	5215197	5215197	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagttggagctggaccaggtCtatgaccagaatcaggcctc	12	11	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5215197	A	A	5215197	1	1	160	0	1	0	0	0	0	0	0	0	12919	928	32	3		3	PTPRS	19	5215197	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	983881	5215197	53913786	996	134824											
EVI5L	115704	broad.mit.edu	37	chr19	7917924	7917924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcgggcggcccccggtgGtcagggcctgcatgttggtg	19	12	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7917924	T	T	7917924	1	4	160	0	1	0	0	0	0	0	0	0	5332	1276	44	3		3	EVI5L	19	7917924	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2702727	7917924	51211059	997	134825											
FBN3	84467	broad.mit.edu	37	chr19	8160275	8160275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacccacacagttcttcccAtcagctgtgagctcaaagcc	6	16	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8160275	T	T	8160275	3	4	160	1	0	0	0	0	1	0	0	0	5761	214	8	5	2736	5	FBN3	19	8160275	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	242351	8160275	50968708	998	134826											
MUC16	94025	broad.mit.edu	37	chr19	9019982	9019982	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaccacatcacagctgctCaccattgacatagagactgt	6	14	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9019982	G	G	9019982	1	3	160	0	1	0	0	0	0	0	0	0	10067	841	29	4		4	MUC16	19	9019982	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	859707	9019982	50109001	999	134827											
MUC16	94025	broad.mit.edu	37	chr19	9064859	9064859	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctctgactgaattttcctAgtgttagataaggcaggagt	12	6	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9064859	T	T	9064859	2	4	160	1	0	0	0	0	0	0	0	1	10067	407	15	5		5	MUC16	19	9064859	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	44877	9064859	50064124	1000	134828											
MUC16	94025	broad.mit.edu	37	chr19	9065531	9065531	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacttaatgatttttcttgtGgtggatatttctggcaacat	8	5	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9065531	C	C	9065531	2	2	160	1	0	0	0	0	0	0	0	1	10067	1335	47	4		4	MUC16	19	9065531	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	672	9065531	50063452	1001	134829											
PKN1	5585	broad.mit.edu	37	chr19	14578650	14578650	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaccccccaggtccctggCtggccgctaaaaccacccct	9	19	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14578650	G	G	14578650	1	3	160	0	1	0	0	0	0	0	0	0	12074	812	28	4		4	PKN1	19	14578650	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	5513119	14578650	44550333	1002	134830											
EMR3	84658	broad.mit.edu	37	chr19	14758242	14758242	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttttttttttttttttttGagacggagtctcgctcttgt	7	6	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14758242	C	C	14758242	1	2	160	0	1	0	0	0	0	0	0	0	5148	1305	45	4		4	EMR3	19	14758242	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	179592	14758242	44370741	1003	134831											
CYP4F22	126410	broad.mit.edu	37	chr19	15648395	15648395	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggagccggcaccgtcgCctgctgacacccgccttcca	11	17	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15648395	A	A	15648395	2	1	160	1	0	0	0	0	0	0	0	1	4222	726	26	3		3	CYP4F22	19	15648395	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	890153	15648395	43480588	1004	134832											
MYO9B	4650	broad.mit.edu	37	chr19	17212808	17212808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctatggccccggcGggcacaggacgagcaccctc	15	15	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17212808	T	T	17212808	3	4	160	1	0	0	0	0	1	0	0	0	10179	1116	39	1	283	1	MYO9B	19	17212808	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1564413	17212808	41916175	1005	134833											
UNC13A	23025	broad.mit.edu	37	chr19	17756920	17756920	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagccctgggcgcagaccActggaagacacagagggcat	14	12	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17756920	T	T	17756920	3	4	160	1	0	0	0	0	1	0	0	0	17110	173	6	5	3170	5	UNC13A	19	17756920	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	544112	17756920	41372063	1006	134834											
GDF15	9518	broad.mit.edu	37	chr19	18499157	18499157	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggccgcccttcccgagggGctccccgaggcctcccgcct	13	21	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18499157	C	C	18499157	2	2	160	1	0	0	0	0	0	0	0	1	6377	1190	42	4		4	GDF15	19	18499157	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	742237	18499157	40629826	1007	134835											
TMEM59L	25789	broad.mit.edu	37	chr19	18729267	18729267	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctgagctgctccaccCtggtgaccgcgcctggccag	14	15	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18729267	T	T	18729267	2	4	160	1	0	0	0	0	0	0	0	1	16309	680	24	4		4	TMEM59L	19	18729267	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	230110	18729267	40399716	1008	134836											
TMEM161A	54929	broad.mit.edu	37	chr19	19232527	19232527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggaccctgggagggtcCcagcctgcccttgcctccct	14	16	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19232527	A	A	19232527	1	1	160	0	1	0	0	0	0	0	0	0	16199	638	22	2		2	TMEM161A	19	19232527	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	503260	19232527	39896456	1009	134837											
ZNF90	7643	broad.mit.edu	37	chr19	20215049	20215049	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtatatgtgtgtttttcaggGaccattggaatttagagatg	12	3	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20215049	C	C	20215049	3	2	160	1	0	0	0	0	1	0	0	0	18328	1188	41	4	11	4	ZNF90	19	20215049	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	982522	20215049	38913934	1010	134838											
ZNF676	163223	broad.mit.edu	37	chr19	22363427	22363427	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatccttcacatttgtaGggtttctctccagtatgaat	6	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22363427	T	T	22363427	2	4	160	1	0	0	0	0	0	0	0	1	18210	987	35	2		2	ZNF676	19	22363427	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2148378	22363427	36765556	1011	134839											
ZNF99	7652	broad.mit.edu	37	chr19	22940689	22940689	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttcacatttgtagggtttCtcttcagtatgaattacttt	6	7	4	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22940689	G	G	22940689	3	3	160	1	0	0	0	0	1	0	0	0	18333	912	32	4	1375	4	ZNF99	19	22940689	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	577262	22940689	36188294	1012	134840											
ZNF536	9745	broad.mit.edu	37	chr19	30935819	30935819	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggcctgagcgagcccagCcagctctatggcaagggcga	15	14	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30935819	A	A	30935819	3	1	160	1	0	0	0	0	1	0	0	0	18101	738	26	3	1352	3	ZNF536	19	30935819	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	7995130	30935819	28193164	1013	134841											
ZNF536	9745	broad.mit.edu	37	chr19	30936301	30936301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggattttttgtcacacgGgctgaaccagactctcgagt	11	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30936301	T	T	30936301	3	4	160	1	0	0	0	0	1	0	0	0	18101	1232	43	2	1834	2	ZNF536	19	30936301	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	482	30936301	28192682	1014	134842											
TSHZ3	57616	broad.mit.edu	37	chr19	31767930	31767930	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggggctcaggtctgacatGatgtacttcccttctgaggt	13	9	3	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31767930	T	T	31767930	2	4	160	1	0	0	0	0	0	0	0	1	16750	1280	45	3		3	TSHZ3	19	31767930	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	831629	31767930	27361053	1015	134843											
TSHZ3	57616	broad.mit.edu	37	chr19	31768285	31768285	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgtgggtgacagaagcactGaacccaaggagcagcctttg	13	10	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768285	T	T	31768285	4	4	160	1	0	0	0	0	0	1	0	0	16750	1294	45	3	835	3	TSHZ3	19	31768285	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	355	31768285	27360698	1016	134844											
USF2	7392	broad.mit.edu	37	chr19	35769860	35769860	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccccccagagtaaaggaggGatcctgtccaaggcctgcga	13	13	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35769860	T	T	35769860	2	4	160	1	0	0	0	0	0	0	0	1	17159	1161	41	3		3	USF2	19	35769860	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	4001575	35769860	23359123	1017	134845											
FFAR3	2865	broad.mit.edu	37	chr19	35850521	35850521	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttgggccctacaacgtGtcccatgtcgtgggctatat	11	11	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35850521	T	T	35850521	2	4	160	1	0	0	0	0	0	0	0	1	5886	1364	48	3		3	FFAR3	19	35850521	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	80661	35850521	23278462	1018	134846											
TMEM149	79713	broad.mit.edu	37	chr19	36230816	36230816	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatcgctatcaccgccaaGgtcaggagcaggaccagcac	12	13	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36230816	A	A	36230816	2	1	160	1	0	0	0	0	0	0	0	1	16185	987	35	4		4	TMEM149	19	36230816	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	380295	36230816	22898167	1019	134847											
ZNF585B	92285	broad.mit.edu	37	chr19	37676140	37676140	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttctctcaagcgtggcTgctctgatgaacactgaaca	9	11	3	3	rs149106602		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37676140	A	A	37676140	3	1	160	1	0	0	0	0	1	0	0	0	18145	1580	55	5	14	5	ZNF585B	19	37676140	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	1445324	37676140	21452843	1020	134848											
RYR1	6261	broad.mit.edu	37	chr19	39002871	39002871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagagctgatgttccccCgctgcccttctaggacagtg	10	14	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39002871	A	A	39002871	1	1	160	0	1	0	0	0	0	0	0	0	13879	667	23	1		1	RYR1	19	39002871	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1326731	39002871	20126112	1021	134849											
CYP2F1	1572	broad.mit.edu	37	chr19	41622111	41622111	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accatggacagcataagcacAgccatcttactcctgctcct	6	15	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41622111	T	T	41622111	2	4	160	1	0	0	0	0	0	0	0	1	4204	175	7	5		5	CYP2F1	19	41622111	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	2619240	41622111	17506872	1022	134850											
PSG1	5669	broad.mit.edu	37	chr19	43352057	43352057	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaagtcatggccagttTtgatgtccagggataaaggt	13	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43352057	C	C	43352057	1	2	160	0	1	0	0	0	0	0	0	0	12759	1856	64	5		5	PSG1	19	43352057	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1729946	43352057	15776926	1023	134851											
PSG6	5675	broad.mit.edu	37	chr19	43523270	43523270	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaaggcatttttcaatcAgaattggcatttgccacctc	6	11	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43523270	G	G	43523270	1	3	160	0	1	0	0	0	0	0	0	0	12765	203	7	5		5	PSG6	19	43523270	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	171213	43523270	15605713	1024	134852											
PSG6	5675	broad.mit.edu	37	chr19	43576960	43576960	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagggctcaaagactgtgagGccgcctgctctgtcttagga	13	10	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43576960	C	C	43576960	1	2	160	0	1	0	0	0	0	0	0	0	12765	1218	42	4		4	PSG6	19	43576960	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	53690	43576960	15552023	1025	134853											
PSG5	5673	broad.mit.edu	37	chr19	43679578	43679578	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaggttttctcctgaacgGtaataggtgaatgaagggta	13	4	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43679578	A	A	43679578	2	1	160	1	0	0	0	0	0	0	0	1	12764	1256	44	4		4	PSG5	19	43679578	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	102618	43679578	15449405	1026	134854											
SFRS16	11129	broad.mit.edu	37	chr19	45571859	45571859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagaggccacgcaggcacGgaggtgctctggggaggaat	18	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45571859	T	T	45571859	1	4	160	0	1	0	0	0	0	0	0	0	14285	1131	39	1		1	SFRS16	19	45571859	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1892281	45571859	13557124	1027	134855											
SIX5	147912	broad.mit.edu	37	chr19	46270388	46270388	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttcggctggactcgtcctCagtcgtgggattcccatcag	11	13	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46270388	G	G	46270388	3	3	160	1	0	0	0	0	1	0	0	0	14463	835	29	4	1398	4	SIX5	19	46270388	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	698529	46270388	12858595	1028	134856											
TPRX1	284355	broad.mit.edu	37	chr19	48305217	48305217	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcagctctgtgaagtgagGgaataactgggtgtctggca	16	6	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48305217	A	A	48305217	3	1	160	1	0	0	0	0	1	0	0	0	16546	1232	43	4	188	4	TPRX1	19	48305217	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	2034829	48305217	10823766	1029	134857											
LIG1	3978	broad.mit.edu	37	chr19	48654415	48654415	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctatgccttgtttaaatTaatcatcctccaaagacttc	3	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48654415	A	A	48654415	1	1	160	0	1	0	0	0	0	0	0	0	8853	1769	61	5		5	LIG1	19	48654415	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	349198	48654415	10474568	1030	134858											
NUP62	23636	broad.mit.edu	37	chr19	50411625	50411625	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcagtgagtccatgtgCgcattgaggatcttgcagat	12	9	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50411625	A	A	50411625	2	1	160	1	0	0	0	0	0	0	0	1	10863	755	27	3		3	NUP62	19	50411625	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	1757210	50411625	8717358	1031	134859											
KLK13	26085	broad.mit.edu	37	chr19	51560016	51560016	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttctgttacagaccaggGggcccccagagtcaccctga	12	13	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51560016	A	A	51560016	3	1	160	1	0	0	0	0	1	0	0	0	8472	1232	43	4	175	4	KLK13	19	51560016	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1148391	51560016	7568967	1032	134860											
SIGLEC6	946	broad.mit.edu	37	chr19	52033926	52033926	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacccgggcgtcctggcccAgcactcacaggagacattga	13	14	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52033926	T	T	52033926	1	4	160	0	1	0	0	0	0	0	0	0	14425	203	7	5		5	SIGLEC6	19	52033926	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	473910	52033926	7095057	1033	134861											
SIGLEC5	8778	broad.mit.edu	37	chr19	52132731	52132731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtgagctccgaggagcGggtggtctcggggtccaggg	22	8	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52132731	T	T	52132731	3	4	160	1	0	0	0	0	1	0	0	0	14424	1116	39	1	1103	1	SIGLEC5	19	52132731	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	98805	52132731	6996252	1034	134862											
ZNF432	9668	broad.mit.edu	37	chr19	52538203	52538203	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttagcctggactttctGgagaacacttttgcacacaa	7	10	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52538203	T	T	52538203	2	4	160	1	0	0	0	0	0	0	0	1	18033	1335	47	2		2	ZNF432	19	52538203	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	405472	52538203	6590780	1035	134863											
ZNF841	284371	broad.mit.edu	37	chr19	52569171	52569171	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctttgccacaatcattaCatttataaggtttctctccg	6	10	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52569171	G	G	52569171	3	3	160	1	0	0	0	0	1	0	0	0	18318	478	17	4	814	4	ZNF841	19	52569171	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	30968	52569171	6559812	1036	134864											
ZNF836	162962	broad.mit.edu	37	chr19	52663757	52663757	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagttctccaacatcacatCccagtacaaagctttctgca	5	13	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52663757	T	T	52663757	3	4	160	1	0	0	0	0	1	0	0	0	18316	855	30	4	2713	4	ZNF836	19	52663757	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	94586	52663757	6465226	1037	134865											
ZNF534	147658	broad.mit.edu	37	chr19	52941164	52941164	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtttcaccagttcaaataAgttttttcagtgtcaaaacc	5	9	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52941164	C	C	52941164	3	2	160	1	0	0	0	0	1	0	0	0	18100	72	3	5	504	5	ZNF534	19	52941164	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	277407	52941164	6187819	1038	134866											
ZNF813	126017	broad.mit.edu	37	chr19	53995126	53995126	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatcatagacttcatactgGagataaaccttacaagtgta	6	8	3	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53995126	C	C	53995126	3	2	160	1	0	0	0	0	1	0	0	0	18304	1174	41	4	1650	4	ZNF813	19	53995126	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1053962	53995126	5133857	1039	134867											
PTPRH	5794	broad.mit.edu	37	chr19	55711935	55711935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaacggggcaggagtgggCccctcactgccctcaaccat	12	15	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55711935	A	A	55711935	1	1	160	0	1	0	0	0	0	0	0	0	12911	754	26	3		3	PTPRH	19	55711935	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1716809	55711935	3417048	1040	134868											
U2AF2	11338	broad.mit.edu	37	chr19	56173908	56173908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacgcccagatgcgcctggGggggctgacccaggcccctg	15	16	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56173908	T	T	56173908	3	4	160	1	0	0	0	0	1	0	0	0	16949	1232	43	2	549	2	U2AF2	19	56173908	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	461973	56173908	2955075	1041	134869											
EPN1	29924	broad.mit.edu	37	chr19	56206528	56206528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggaggcccagccactGgcccttccgtcaccaacccc	9	20	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56206528	T	T	56206528	3	4	160	1	0	0	0	0	1	0	0	0	5227	1348	47	2	1916	2	EPN1	19	56206528	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	32620	56206528	2922455	1042	134870											
NLRP4	147945	broad.mit.edu	37	chr19	56363306	56363306	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattgccatccccccagtaCtagcaagatactatataatg	5	12	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56363306	T	T	56363306	1	4	160	0	1	0	0	0	0	0	0	0	10574	580	20	4		4	NLRP4	19	56363306	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	156778	56363306	2765677	1043	134871											
NLRP13	126204	broad.mit.edu	37	chr19	56424218	56424218	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcatccaagctctcagagCgtgactcagatatgattatt	7	10	3	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56424218	G	G	56424218	3	3	160	1	0	0	0	0	1	0	0	0	10570	768	27	4	2192	4	NLRP13	19	56424218	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	60912	56424218	2704765	1044	134872											
ZNF470	388566	broad.mit.edu	37	chr19	57089368	57089368	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcagccagaatgcacaccTcgcgcaacatcagaaaatac	6	14	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57089368	A	A	57089368	3	1	160	1	0	0	0	0	1	0	0	0	18056	1551	54	5	1585	5	ZNF470	19	57089368	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	665150	57089368	2039615	1045	134873											
MZF1	7593	broad.mit.edu	37	chr19	59080697	59080697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggccctggggtgctccCtccatgagggaccctcaggc	14	15	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59080697	A	A	59080697	3	1	160	1	0	0	0	0	1	0	0	0	10202	681	24	2	1493	2	MZF1	19	59080697	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1991329	59080697	48286	1046	134874											
C20orf27	54976	broad.mit.edu	37	chr20	3735196	3735196	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaggggcaattggtcagcAcctcccccagcctccccgat	10	17	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3735196	C	C	3735196	1	2	160	0	1	0	0	0	0	0	0	0	2129	174	6	5		5	C20orf27	20	3735196	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08		3735196	59290324	1047	134875											
PLCB4	5332	broad.mit.edu	37	chr20	9459604	9459604	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agatggtgaaattggaagccGagatggaccgcagaccagca	14	8	0	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9459604	C	C	9459604	3	2	160	1	0	0	0	0	1	0	0	0	12125	1059	37	4	3715	4	PLCB4	20	9459604	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	5724408	9459604	53565916	1048	134876											
PAK7	57144	broad.mit.edu	37	chr20	9624939	9624939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttcaaagttggacgggCcagatatttcaatctttttc	9	7	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9624939	A	A	9624939	3	1	160	1	0	0	0	0	1	0	0	0	11499	739	26	3	2153	3	PAK7	20	9624939	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	165335	9624939	53400581	1049	134877											
HM13	81502	broad.mit.edu	37	chr20	30137841	30137841	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcccctcacttcccttcAtactgctctttttttctcct	2	17	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30137841	T	T	30137841	1	4	160	0	1	0	0	0	0	0	0	0	7284	232	8	5		5	HM13	20	30137841	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	20512902	30137841	32887679	1050	134878											
TPX2	22974	broad.mit.edu	37	chr20	30366632	30366632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggcccgagtgactaaggGatgtaccattgttaagcctt	11	9	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30366632	T	T	30366632	3	4	160	1	0	0	0	0	1	0	0	0	16556	1174	41	3	929	3	TPX2	20	30366632	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	228791	30366632	32658888	1051	134879											
CBFA2T2	9139	broad.mit.edu	37	chr20	32162056	32162056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatacaggtcctggcaaGgcaatggaaaggtatgtgtg	14	5	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32162056	T	T	32162056	3	4	160	1	0	0	0	0	1	0	0	0	2723	1000	35	2	90	2	CBFA2T2	20	32162056	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1795424	32162056	30863464	1052	134880											
CBFA2T2	9139	broad.mit.edu	37	chr20	32210932	32210932	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttcaaggccaacctgccCctgctgcagcgggaactgct	10	16	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32210932	T	T	32210932	2	4	160	1	0	0	0	0	0	0	0	1	2723	610	22	4		4	CBFA2T2	20	32210932	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	48876	32210932	30814588	1053	134881											
PHF20	51230	broad.mit.edu	37	chr20	34435389	34435389	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttgtagttgtttttactcAtgacttaggtggtggggggg	16	3	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34435389	T	T	34435389	1	4	160	0	1	0	0	0	0	0	0	0	11926	232	8	5		5	PHF20	20	34435389	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	2224457	34435389	28590131	1054	134882											
RBL1	5933	broad.mit.edu	37	chr20	35695054	35695054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctataatgctgagaacttgcTtaaaacatttttttcttttc	4	7	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35695054	A	A	35695054	1	1	160	0	1	0	0	0	0	0	0	0	13217	1624	56	5		5	RBL1	20	35695054	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	1259665	35695054	27330466	1055	134883											
RPN2	6185	broad.mit.edu	37	chr20	35826893	35826893	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaggccctctcaggatgtGaggtgagtccgggttcctac	14	12	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35826893	T	T	35826893	4	4	160	1	0	0	0	0	0	1	0	0	13719	1291	45	3	311	3	RPN2	20	35826893	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	131839	35826893	27198627	1056	134884											
BPI	671	broad.mit.edu	37	chr20	36959354	36959354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgggtgggaaaaccagaCagtatccaccagagtgggtc	13	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36959354	A	A	36959354	1	1	160	0	1	0	0	0	0	0	0	0	1499	493	17	3		3	BPI	20	36959354	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	1132461	36959354	26066166	1057	134885											
EMILIN3	90187	broad.mit.edu	37	chr20	39991656	39991656	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggacatcaccctccaggcGttccagccgctcaccaaaca	7	18	2	0	rs146469782		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39991656	C	C	39991656	3	2	160	1	0	0	0	0	1	0	0	0	5137	1145	40	4	1751	4	EMILIN3	20	39991656	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3032302	39991656	23033864	1058	134886											
CHD6	84181	broad.mit.edu	37	chr20	40045883	40045883	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagttttctcctgtagcagCtgagcaatagtgggagctcg	13	8	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40045883	G	G	40045883	3	3	160	1	0	0	0	0	1	0	0	0	3360	796	28	4	1937	4	CHD6	20	40045883	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	54227	40045883	22979637	1059	134887											
STK4	6789	broad.mit.edu	37	chr20	43623806	43623806	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtgattcaggaaattggaTacaactgtgtagcagacatc	10	6	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43623806	C	C	43623806	3	2	160	1	0	0	0	0	1	0	0	0	15424	1406	49	5	623	5	STK4	20	43623806	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3577923	43623806	19401714	1060	134888											
ARFGEF2	10564	broad.mit.edu	37	chr20	47604875	47604875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagtgctgacactgcttatGtcctagcgtattcaattatt	7	9	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47604875	T	T	47604875	3	4	160	1	0	0	0	0	1	0	0	0	855	1377	48	3	2377	3	ARFGEF2	20	47604875	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3981069	47604875	15420645	1061	134889											
SPO11	23626	broad.mit.edu	37	chr20	55910469	55910469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagataaaaacttttttttTaaaaggctgttgctgtgcca	7	5	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55910469	A	A	55910469	1	1	160	0	1	0	0	0	0	0	0	0	15195	1769	61	5		5	SPO11	20	55910469	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	8305594	55910469	7115051	1062	134890											
ZNF831	128611	broad.mit.edu	37	chr20	57829818	57829818	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcttccagagaaacatggTgtctggtcaaaaagactgtt	10	7	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57829818	A	A	57829818	1	1	160	0	1	0	0	0	0	0	0	0	18314	1711	59	5		5	ZNF831	20	57829818	3'UTR	SNP	T	TCGA-50-5933-01A-11D-1753-08	1919349	57829818	5195702	1063	134891											
LAMA5	3911	broad.mit.edu	37	chr20	60921986	60921986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactggcactcgttggcaCtgttggcagtcgcaggcttc	12	13	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60921986	A	A	60921986	3	1	160	1	0	0	0	0	1	0	0	0	8681	565	20	3	10328	3	LAMA5	20	60921986	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	3092168	60921986	2103534	1064	134892											
COL20A1	57642	broad.mit.edu	37	chr20	61929206	61929206	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcctgtacccccacagctGattaggtggatggggaggcc	14	11	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61929206	A	A	61929206	1	1	160	0	1	0	0	0	0	0	0	0	3711	1305	45	4		4	COL20A1	20	61929206	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1007220	61929206	1096314	1065	134893											
ZNF512B	57473	broad.mit.edu	37	chr20	62595355	62595355	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagtctccacactcagccCccatccctgtgctgtgggat	8	17	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62595355	T	T	62595355	1	4	160	0	1	0	0	0	0	0	0	0	18084	638	22	4		4	ZNF512B	20	62595355	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	666149	62595355	430165	1066	134894											
TPTE	7179	broad.mit.edu	37	chr21	10969090	10969090	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcacctttcactgataggtGacacccgggctgctccttta	8	14	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10969090	T	T	10969090	4	4	160	1	0	0	0	0	0	1	0	0	16554	1294	45	3	1569	3	TPTE	21	10969090	Nonsense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08		10969090	37160805	1067	134895											
BAGE2	85319	broad.mit.edu	37	chr21	11039408	11039408	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatcagcctcattagaaatcTgtttttccaattcggtattc	5	9	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039408	A	A	11039408	1	1	160	0	1	0	0	0	0	0	0	0	1297	1595	55	5		5	BAGE2	21	11039408	3'UTR	SNP	T	TCGA-50-5933-01A-11D-1753-08	70318	11039408	37090487	1068	134896											
BAGE2	85319	broad.mit.edu	37	chr21	11098714	11098714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcttaccactccagccgCcatcttactgctccggccgc	6	20	2	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11098714	A	A	11098714	3	1	160	1	0	0	0	0	1	0	0	0	1297	739	26	3	341	3	BAGE2	21	11098714	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	59306	11098714	37031181	1069	134897											
GABPA	2551	broad.mit.edu	37	chr21	27124258	27124258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttttggtgacttctgcGttttcatttagatttacaat	6	5	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27124258	T	T	27124258	1	4	160	0	1	0	0	0	0	0	0	0	6217	1160	40	3		3	GABPA	21	27124258	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	16025544	27124258	21005637	1070	134898											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744512	31744512	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcgggaggagaagtttccaGagcagcagttgtaggacatg	16	6	0	2	rs143324515	byFrequency	TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31744512	T	T	31744512	3	4	160	1	0	0	0	0	1	0	0	0	8594	942	33	3	511	3	KRTAP13-2	21	31744512	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4620254	31744512	16385383	1071	134899											
SON	6651	broad.mit.edu	37	chr21	34923232	34923232	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttgccggggcagccttcGgtgactggggtgccagagtt	18	9	0	2	rs146602176		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34923232	T	T	34923232	2	4	160	1	0	0	0	0	0	0	0	1	15040	1103	39	1		1	SON	21	34923232	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	3178720	34923232	13206663	1072	134900											
TRPM2	7226	broad.mit.edu	37	chr21	45784045	45784045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagcagcacttggaggaGgctaccaagccccacacctt	10	14	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45784045	T	T	45784045	3	4	160	1	0	0	0	0	1	0	0	0	16711	991	35	2	313	2	TRPM2	21	45784045	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	10860813	45784045	2345850	1073	134901											
CECR1	51816	broad.mit.edu	37	chr22	17680558	17680558	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaggacgctcagagagccCagcgcggtgaggaaagcgac	15	10	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17680558	T	T	17680558	1	4	160	0	1	0	0	0	0	0	0	0	3235	609	21	4		4	CECR1	22	17680558	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08		17680558	33624008	1074	134902											
C22orf25	128989	broad.mit.edu	37	chr22	20040902	20040902	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggggccccatatcagtgttCctgggagaagagcacatgcc	14	11	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20040902	T	T	20040902	1	4	160	0	1	0	0	0	0	0	0	0	2161	870	30	4		4	C22orf25	22	20040902	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2360344	20040902	31263664	1075	134903											
MMP11	4320	broad.mit.edu	37	chr22	24124381	24124381	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatggcagtggtggctgGgcaggtccttgcagccttcc	17	11	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24124381	T	T	24124381	1	4	160	0	1	0	0	0	0	0	0	0	9743	1247	43	2		2	MMP11	22	24124381	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	4083479	24124381	27180185	1076	134904											
PATZ1	23598	broad.mit.edu	37	chr22	31740992	31740992	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgccggcgatgccattGctgttggctgccaaggctgc	14	12	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31740992	A	A	31740992	2	1	160	1	0	0	0	0	0	0	0	1	11570	1310	46	4		4	PATZ1	22	31740992	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	7616611	31740992	19563574	1077	134905											
ISX	91464	broad.mit.edu	37	chr22	35463074	35463074	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacagagtcacccctgagCccctcaatgtgtgctgaggt	10	13	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35463074	A	A	35463074	1	1	160	0	1	0	0	0	0	0	0	0	7935	754	26	3		3	ISX	22	35463074	5'UTR	SNP	C	TCGA-50-5933-01A-11D-1753-08	3722082	35463074	15841492	1078	134906											
SOX10	6663	broad.mit.edu	37	chr22	38369875	38369876	+	Missense_Mutation	DNP	GG	TT	TT													caccaggtggtgagaccgtgGgcagagccacgcctggtggc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38369876	TT	TT	38369875	3	4	160	1	0	0	0	0	1	0	0	0	15055	1232	43	2	376	2	SOX10	22	38369875	Missense_Mutation	DNP	GG	TCGA-50-5933-01A-11D-1753-08	2906801	38369875	12934691	1079	134907											
RBX1	9978	broad.mit.edu	37	chr22	41347408	41347408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtgtttccaaaatggcGgcagcgatggatgtggatac	14	8	0	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41347408	T	T	41347408	2	4	160	1	0	0	0	0	0	0	0	1	13273	1103	39	1		1	RBX1	22	41347408	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	2977533	41347408	9957158	1080	134908											
SCUBE1	80274	broad.mit.edu	37	chr22	43625262	43625262	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgggtgggcacggcctgtCactctcagtcactcaaggca	14	12	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43625262	G	G	43625262	1	3	160	0	1	0	0	0	0	0	0	0	14057	841	29	4		4	SCUBE1	22	43625262	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2277854	43625262	7679304	1081	134909											
EFCAB6	64800	broad.mit.edu	37	chr22	43926592	43926592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagcagccaggtcacacCgggccttcggcagcaggtag	14	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43926592	A	A	43926592	1	1	160	0	1	0	0	0	0	0	0	0	4979	667	23	1		1	EFCAB6	22	43926592	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	301330	43926592	7377974	1082	134910											
KIAA1644	85352	broad.mit.edu	37	chr22	44645613	44645613	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacatggtgtctcctccatGgggacatttctctctggcct	9	13	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44645613	A	A	44645613	1	1	160	0	1	0	0	0	0	0	0	0	8320	1363	47	4		4	KIAA1644	22	44645613	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	719021	44645613	6658953	1083	134911											
SBF1	6305	broad.mit.edu	37	chr22	50902833	50902833	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctccagccgccgggcgctGttgacatgcagcccactgca	11	17	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50902833	A	A	50902833	2	1	160	1	0	0	0	0	0	0	0	1	13970	1368	48	4		4	SBF1	22	50902833	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08	6257220	50902833	401733	1084	134912											
ARSF	416	broad.mit.edu	37	chrX	3002690	3002690	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccattatggtgaaggaagcGatttcctttttagaaaggta	10	5	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3002690	T	T	3002690	2	4	160	1	0	0	0	0	0	0	0	1	995	1045	37	3		3	ARSF	23	3002690	Silent	SNP	G	TCGA-50-5933-01A-11D-1753-08		3002690	152267870	1085	134913											
SCML2	10389	broad.mit.edu	37	chrX	18338426	18338426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaaaacaataaaaacatgGcagctttttataacatcttt	3	7	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18338426	A	A	18338426	1	1	160	0	1	0	0	0	0	0	0	0	14023	1218	42	4		4	SCML2	23	18338426	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	15335736	18338426	136932134	1086	134914											
DMD	1756	broad.mit.edu	37	chrX	32398634	32398634	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atataggttttacctttcccCaggcaacttcagaatccaaa	5	11	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32398634	G	G	32398634	3	3	160	1	0	0	0	0	1	0	0	0	4620	595	21	4	6551	4	DMD	23	32398634	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	14060208	32398634	122871926	1087	134915											
DDX3X	1654	broad.mit.edu	37	chrX	41203341	41203341	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttggtattagcaccaaCgagagagttggcagtacaga	11	9	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41203341	T	T	41203341	3	4	160	1	0	0	0	0	1	0	0	0	4391	536	19	4	858	4	DDX3X	23	41203341	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	8804707	41203341	114067219	1088	134916											
ITIH5L	347365	broad.mit.edu	37	chrX	54783745	54783745	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaggggttctccaaggacaGaggtggttgtggtactgctg	18	6	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54783745	T	T	54783745	3	4	160	1	0	0	0	0	1	0	0	0	7978	942	33	3	1203	3	ITIH5L	23	54783745	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	13580404	54783745	100486815	1089	134917											
USP51	158880	broad.mit.edu	37	chrX	55513497	55513497	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctctctttagtagaggCcaaaaacggagtcatgtcca	9	10	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55513497	A	A	55513497	3	1	160	1	0	0	0	0	1	0	0	0	17210	739	26	3	263	3	USP51	23	55513497	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	729752	55513497	99757063	1090	134918											
MTMR8	55613	broad.mit.edu	37	chrX	63444307	63444307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcctggcacaaggctctgcGgacgactaaacggacctgtg	13	12	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63444307	C	C	63444307	3	2	160	1	0	0	0	0	1	0	0	0	10043	1116	39	4		4	MTMR8	23	63444307	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	7930810	63444307	91826253	1091	134919											
EDA2R	60401	broad.mit.edu	37	chrX	65824187	65824187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggtatgaggggatatGggtagtctttactaccctat	12	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65824187	T	T	65824187	1	4	160	0	1	0	0	0	0	0	0	0	4944	1363	47	2		2	EDA2R	23	65824187	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2379880	65824187	89446373	1092	134920											
TEX11	56159	broad.mit.edu	37	chrX	69828958	69828958	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctgtttttcgaaaccacTgagcttcattagctcttgac	6	11	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69828958	G	G	69828958	3	3	160	1	0	0	0	0	1	0	0	0	15896	1580	55	5	951	5	TEX11	23	69828958	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	4004771	69828958	85441602	1093	134921											
P2RY10	27334	broad.mit.edu	37	chrX	78216858	78216859	+	Missense_Mutation	DNP	CG	GA	GA													ttagcagttgtcccgttgtcCgaatcgcactgtatttccac							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	78216859	GA	GA	78216858	3	3	160	1	0	0	0	0	1	0	0	0	11441	644	23	4	843	4	P2RY10	23	78216858	Missense_Mutation	DNP	CG	TCGA-50-5933-01A-11D-1753-08	8387900	78216858	77053702	1094	134922											
BRWD3	254065	broad.mit.edu	37	chrX	80001181	80001181	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcagatgaagggaaaatatGaccaaagcgactacagccgg	12	8	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80001181	T	T	80001181	3	4	160	1	0	0	0	0	1	0	0	0	1535	1290	45	3	5070	3	BRWD3	23	80001181	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	1784323	80001181	75269379	1095	134923											
CYLC1	1538	broad.mit.edu	37	chrX	83128653	83128653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaaagattcaaagaaaGttaagaaaaatgtcaagaaa	7	3	2	5			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83128653	T	T	83128653	3	4	160	1	0	0	0	0	1	0	0	0	4174	1029	36	3	951	3	CYLC1	23	83128653	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	3127472	83128653	72141907	1096	134924											
CYLC1	1538	broad.mit.edu	37	chrX	83129210	83129211	+	Missense_Mutation	DNP	CT	AC	AC													ttaaagaaggacaagaaacaCtcaaaggaaaagaaaggttc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	83129211	AC	AC	83129210	3	1	160	1	0	0	0	0	1	0	0	0	4174	564	20	3	1508	3	CYLC1	23	83129210	Missense_Mutation	DNP	CT	TCGA-50-5933-01A-11D-1753-08	557	83129210	72141350	1097	134925											
POF1B	79983	broad.mit.edu	37	chrX	84561380	84561380	+	Intron	DEL	T	-	-													cataagacaaatgcattttgTttttggtgagggagtgttct							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84561380	-	-	84561380	6	5	160	0	1	1	0	1	0	0	0	0	12277	1740	60	0		0	POF1B	23	84561380	Intron	DEL	T	TCGA-50-5933-01A-11D-1753-08	1432170	84561380	70709180	1098	134926											
DACH2	117154	broad.mit.edu	37	chrX	85969800	85969800	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatatttacaatcccactgGatcttcagtagtaactcagc	5	10	3	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85969800	T	T	85969800	1	4	160	0	1	0	0	0	0	0	0	0	4254	1189	41	3		3	DACH2	23	85969800	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	1408420	85969800	69300760	1099	134927											
KLHL4	56062	broad.mit.edu	37	chrX	86890577	86890578	+	Frame_Shift_Ins	INS	-	T	T													tctagattatatgctattggINStggacgtgatggaagttcct							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86890578	T	T	86890577	7	5	160	1	0	1	1	0	0	0	0	0	8462	1261	44	0	1761	0	KLHL4	23	86890577	Frame_Shift_Ins	INS	-	TCGA-50-5933-01A-11D-1753-08	920777	86890577	68379983	1100	134928											
PCDH11X	27328	broad.mit.edu	37	chrX	91133849	91133849	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgataatgatgaagaaaaaGaaaaagaagaagaagcattc	9	2	0	8			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91133849	T	T	91133849	3	4	160	1	0	0	0	0	1	0	0	0	11602	933	33	3	2616	3	PCDH11X	23	91133849	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	4243272	91133849	64136711	1101	134929											
PCDH11X	27328	broad.mit.edu	37	chrX	91134054	91134054	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgatttggcccgacacTacaaatctgcctctccacag	7	16	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91134054	C	C	91134054	3	2	160	1	0	0	0	0	1	0	0	0	11602	1522	53	5	2821	5	PCDH11X	23	91134054	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	205	91134054	64136506	1102	134930											
SYTL4	94121	broad.mit.edu	37	chrX	99944996	99944998	+	Intron	DEL	TTC	-	-													agccaaatcaaagagacctaTtcttctccataccaagagcc							TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99944998	-	-	99944996	6	5	160	0	1	1	0	1	0	0	0	0	15604	1508	52	0		0	SYTL4	23	99944996	Intron	DEL	TTC	TCGA-50-5933-01A-11D-1753-08	8810942	99944996	55325564	1103	134931											
BTK	695	broad.mit.edu	37	chrX	100612591	100612591	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgaaacagagagagaggtCatgctgttggtgtggtgtag	16	5	1	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100612591	T	T	100612591	1	4	160	0	1	0	0	0	0	0	0	0	1567	841	29	4		4	BTK	23	100612591	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	667595	100612591	54657969	1104	134932											
TCEAL6	158931	broad.mit.edu	37	chrX	101395808	101395808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatcctgtacatctctttGcatccaatgaaaaccaccca	5	13	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101395808	T	T	101395808	3	4	160	1	0	0	0	0	1	0	0	0	15797	1328	46	3	59	3	TCEAL6	23	101395808	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	783217	101395808	53874752	1105	134933											
NXF3	56000	broad.mit.edu	37	chrX	102339862	102339862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataccagaaaaaaatcttGggaaaatataatggataatg	8	3	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102339862	T	T	102339862	1	4	160	0	1	0	0	0	0	0	0	0	10880	1363	47	2		2	NXF3	23	102339862	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	944054	102339862	52930698	1106	134934											
NXF3	56000	broad.mit.edu	37	chrX	102343728	102343728	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaaagagtccttatgcaTccctttgccaagtagaattt	7	8	0	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102343728	G	G	102343728	1	3	160	0	1	0	0	0	0	0	0	0	10880	1450	50	5		5	NXF3	23	102343728	Intron	SNP	T	TCGA-50-5933-01A-11D-1753-08	3866	102343728	52926832	1107	134935											
TCEAL3	85012	broad.mit.edu	37	chrX	102864488	102864488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggttttcattggatgCaaagagatgtacaggatcca	13	5	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102864488	A	A	102864488	3	1	160	1	0	0	0	0	1	0	0	0	15794	711	25	3	498	3	TCEAL3	23	102864488	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	520760	102864488	52406072	1108	134936											
COL4A6	1288	broad.mit.edu	37	chrX	107437736	107437736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcactcttctacctaccaaCcctggatttttcacttccca	2	16	4	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107437736	A	A	107437736	1	1	160	0	1	0	0	0	0	0	0	0	3727	522	18	3		3	COL4A6	23	107437736	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	4573248	107437736	47832824	1109	134937											
CAPN6	827	broad.mit.edu	37	chrX	110497517	110497517	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacctttgtccaatgagactCctgaacagccaaacaggaaa	7	11	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110497517	T	T	110497517	3	4	160	1	0	0	0	0	1	0	0	0	2656	864	30	4	1689	4	CAPN6	23	110497517	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	3059781	110497517	44773043	1110	134938											
AMOT	154796	broad.mit.edu	37	chrX	112022779	112022779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgttcgattccgtcccaCgttcagtttgggtactgcag	10	10	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112022779	A	A	112022779	3	1	160	1	0	0	0	0	1	0	0	0	582	536	19	3	659	3	AMOT	23	112022779	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1525262	112022779	43247781	1111	134939											
AMOT	154796	broad.mit.edu	37	chrX	112022947	112022947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgttagaaaacaatagGtgattcaaatccagacatct	7	7	2	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112022947	A	A	112022947	1	1	160	0	1	0	0	0	0	0	0	0	582	1276	44	4		4	AMOT	23	112022947	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	168	112022947	43247613	1112	134940											
IL13RA2	3598	broad.mit.edu	37	chrX	114239721	114239721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacattttaaaaatctcCtattctcaggctaaacatca	3	10	3	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114239721	T	T	114239721	1	4	160	0	1	0	0	0	0	0	0	0	7700	696	24	4		4	IL13RA2	23	114239721	Intron	SNP	C	TCGA-50-5933-01A-11D-1753-08	2216774	114239721	41030839	1113	134941											
RHOXF2B	727940	broad.mit.edu	37	chrX	119293138	119293138	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacctcgagggcaccagcggCagcgatggcaacgttgagga	16	11	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119293138	A	A	119293138	2	1	160	1	0	0	0	0	0	0	0	1	13458	697	25	3		3	RHOXF2B	23	119293138	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	5053417	119293138	35977422	1114	134942											
GRIA3	2892	broad.mit.edu	37	chrX	122537110	122537110	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacctatgtgtcagtgttGggggtcctggtgggaattac	14	8	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122537110	A	A	122537110	1	1	160	0	1	0	0	0	0	0	0	0	6835	1363	47	4		4	GRIA3	23	122537110	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3243972	122537110	32733450	1115	134943											
STAG2	10735	broad.mit.edu	37	chrX	123215182	123215182	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatattttaaaagatgttaAtctccaggtattaagaactt	5	4	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123215182	T	T	123215182	1	4	160	0	1	0	0	0	0	0	0	0	15361	116	4	5		5	STAG2	23	123215182	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	678072	123215182	32055378	1116	134944											
ACTRT1	139741	broad.mit.edu	37	chrX	127185254	127185254	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttccttcatgagcctttccTccagcccagggaggagagtg	11	13	1	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127185254	A	A	127185254	3	1	160	1	0	0	0	0	1	0	0	0	218	1551	54	5	202	5	ACTRT1	23	127185254	Missense_Mutation	SNP	T	TCGA-50-5933-01A-11D-1753-08	3970072	127185254	28085306	1117	134945											
RBMX2	51634	broad.mit.edu	37	chrX	129537746	129537746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacacttggtaaatgttgGtggaactgaaatgtggtttt	11	3	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129537746	T	T	129537746	1	4	160	0	1	0	0	0	0	0	0	0	13260	1276	44	3		3	RBMX2	23	129537746	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	2352492	129537746	25732814	1118	134946											
MCF2	4168	broad.mit.edu	37	chrX	138696968	138696968	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcattgaagaataaactcAgtatttacatcaagagtaac	6	8	2	3			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138696968	T	T	138696968	1	4	160	0	1	0	0	0	0	0	0	0	9471	203	7	5		5	MCF2	23	138696968	Intron	SNP	A	TCGA-50-5933-01A-11D-1753-08	9159222	138696968	16573592	1119	134947											
MCF2	4168	broad.mit.edu	37	chrX	138724720	138724720	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttccaattgtcaacGcaacgttgatgaaatacgag	7	8	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138724720	T	T	138724720	1	4	160	0	1	0	0	0	0	0	0	0	9471	1102	38	3		3	MCF2	23	138724720	5'UTR	SNP	G	TCGA-50-5933-01A-11D-1753-08	27752	138724720	16545840	1120	134948											
MAGEC3	139081	broad.mit.edu	37	chrX	140983288	140983288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggacttgcaggccacagaCaggaagatggccgccgaggg	16	10	0	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140983288	A	A	140983288	3	1	160	1	0	0	0	0	1	0	0	0	9274	479	17	3	1088	3	MAGEC3	23	140983288	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	2258568	140983288	14287272	1121	134949											
SLITRK4	139065	broad.mit.edu	37	chrX	142716539	142716539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttactgtggttgccacCtatcagtgacttcttacttt	6	9	2	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142716539	A	A	142716539	3	1	160	1	0	0	0	0	1	0	0	0	14859	681	24	2	131	2	SLITRK4	23	142716539	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1733251	142716539	12554021	1122	134950											
SPANXN1	494118	broad.mit.edu	37	chrX	144337221	144337221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaacagggacttagccCccgaaccgagtttgaaaaag	9	12	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144337221	A	A	144337221	3	1	160	1	0	0	0	0	1	0	0	0	15106	623	22	2	112	2	SPANXN1	23	144337221	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1620682	144337221	10933339	1123	134951											
SLITRK2	84631	broad.mit.edu	37	chrX	144905684	144905684	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaggctatctgtccagacAgcccaaacttgtcagatgga	12	10	2	2			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144905684	T	T	144905684	3	4	160	1	0	0	0	0	1	0	0	0	14857	188	7	5	1743	5	SLITRK2	23	144905684	Missense_Mutation	SNP	A	TCGA-50-5933-01A-11D-1753-08	568463	144905684	10364876	1124	134952											
HSFX2	100130086	broad.mit.edu	37	chrX	148770668	148770668	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggaatgtgcatctgcaagGaggggtaagctggagtggga	19	4	1	0			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148770668	T	T	148770668	1	4	160	0	1	0	0	0	0	0	0	0	7468	1189	41	3		3	HSFX2	23	148770668	Intron	SNP	G	TCGA-50-5933-01A-11D-1753-08	3864984	148770668	6499892	1125	134953											
MAGEA11	4110	broad.mit.edu	37	chrX	148798362	148798362	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgagtacatagccaatGccaatgggagggatcccact	10	10	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148798362	A	A	148798362	3	1	160	1	0	0	0	0	1	0	0	0	9253	1319	46	4	1243	4	MAGEA11	23	148798362	Missense_Mutation	SNP	G	TCGA-50-5933-01A-11D-1753-08	27694	148798362	6472198	1126	134954											
GPR50	9248	broad.mit.edu	37	chrX	150349228	150349228	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccctaagccccattccagAtcctcctctgcctatcgcaa	4	19	1	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150349228	G	G	150349228	2	3	160	1	0	0	0	0	0	0	0	1	6762	330	12	5		5	GPR50	23	150349228	Silent	SNP	A	TCGA-50-5933-01A-11D-1753-08	1550866	150349228	4921332	1127	134955											
MAGEA12	4111	broad.mit.edu	37	chrX	151900601	151900601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagtggggagggtggaggctCcctgaggactgtggggagga	22	5	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151900601	A	A	151900601	3	1	160	1	0	0	0	0	1	0	0	0	9254	855	30	3	748	3	MAGEA12	23	151900601	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1551373	151900601	3369959	1128	134956											
ATP2B3	492	broad.mit.edu	37	chrX	152818719	152818719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcattgaggaccctgtgCggcccgaggtagccaccacc	14	14	0	1			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152818719	A	A	152818719	2	1	160	1	0	0	0	0	0	0	0	1	1145	759	27	3		3	ATP2B3	23	152818719	Silent	SNP	C	TCGA-50-5933-01A-11D-1753-08	918118	152818719	2451841	1129	134957											
MTCP1NB	100272147	broad.mit.edu	37	chrX	154290188	154290188	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcctgaacagacgacagatCttcccttgggatactgagca	9	11	1	4			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154290188	G	G	154290188	3	3	160	1	0	0	0	0	1	0	0	0	10010	913	32	4	73	4	MTCP1NB	23	154290188	Missense_Mutation	SNP	C	TCGA-50-5933-01A-11D-1753-08	1471469	154290188	980372	1130	134958											
CDK11B	984	broad.mit.edu	37	chr1	1588773	1588773	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatggaaaaatgagggcaAagaaattaaatctcctttaa	7	5	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1588773	G	G	1588773	1	3	161	0	1	0	0	0	0	0	0	0	3157	29	1	5		5	CDK11B	1	1588773	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08		1588773	247661848	1	134959											
USP48	84196	broad.mit.edu	37	chr1	22033296	22033296	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcctttggaaagtactGctgcagtttgctccaagcct	11	10	0	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22033296	A	A	22033296	4	1	161	1	0	0	0	0	0	1	0	0	17206	1328	46	4	1126	4	USP48	1	22033296	Nonsense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	20444523	22033296	227217325	2	134960											
AIM1L	55057	broad.mit.edu	37	chr1	26655186	26655186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgccatgactcatccccaCcagcagccaccgcacccatg	6	20	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26655186	A	A	26655186	1	1	161	0	1	0	0	0	0	0	0	0	431	522	18	3		3	AIM1L	1	26655186	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	4621890	26655186	222595435	3	134961											
IQCC	55721	broad.mit.edu	37	chr1	32672631	32672631	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcaaagactgccccacagCcaacctcagcttcaagagct	7	15	3	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32672631	T	T	32672631	2	4	161	1	0	0	0	0	0	0	0	1	7874	738	26	4		4	IQCC	1	32672631	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	6017445	32672631	216577990	4	134962											
STK40	83931	broad.mit.edu	37	chr1	36826829	36826829	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcagaggcttaccaaggatGaatggtccagctctctttgc	11	10	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36826829	A	A	36826829	2	1	161	1	0	0	0	0	0	0	0	1	15425	1281	45	4		4	STK40	1	36826829	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	4154198	36826829	212423792	5	134963											
CSF3R	1441	broad.mit.edu	37	chr1	36939359	36939359	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaccaaggtgggggcccctCctcacttgaaactcttcaga	11	13	3	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36939359	T	T	36939359	1	4	161	0	1	0	0	0	0	0	0	0	3971	870	30	4		4	CSF3R	1	36939359	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	112530	36939359	212311262	6	134964											
YBX1	4904	broad.mit.edu	37	chr1	43163001	43163001	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaggactcagcaatatcaTgcctctcctgcagactcatt	7	12	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43163001	A	A	43163001	1	1	161	0	1	0	0	0	0	0	0	0	17596	1479	51	5		5	YBX1	1	43163001	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	6223642	43163001	206087620	7	134965											
CC2D1B	200014	broad.mit.edu	37	chr1	52821405	52821405	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagcacttggagtgtccggGcaagagcctcctggagtagg	15	10	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52821405	A	A	52821405	1	1	161	0	1	0	0	0	0	0	0	0	2753	1218	42	4		4	CC2D1B	1	52821405	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	9658404	52821405	196429216	8	134966											
CTH	1491	broad.mit.edu	37	chr1	70904687	70904687	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcagtcaaagtgcatattTaaaggatggtagtattcaga	10	5	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70904687	G	G	70904687	1	3	161	0	1	0	0	0	0	0	0	0	4043	1769	61	5		5	CTH	1	70904687	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	18083282	70904687	178345934	9	134967											
SLC44A3	126969	broad.mit.edu	37	chr1	95357975	95357975	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atagttttttatctgtgtttGaaactgtgctggatgcactt	9	5	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95357975	C	C	95357975	3	2	161	1	0	0	0	0	1	0	0	0	14751	1291	45	4	1813	4	SLC44A3	1	95357975	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	24453288	95357975	153892646	10	134968											
GPR61	83873	broad.mit.edu	37	chr1	110086231	110086231	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtgtccccccaggctgttCactccagtggagccacagtg	11	15	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110086231	T	T	110086231	3	4	161	1	0	0	0	0	1	0	0	0	6767	838	29	4	589	4	GPR61	1	110086231	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	14728256	110086231	139164390	11	134969											
TSPAN2	10100	broad.mit.edu	37	chr1	115600149	115600149	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagagtaagaaccttggtaGaagcttaccttgtgtcctag	11	7	0	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115600149	C	C	115600149	1	2	161	0	1	0	0	0	0	0	0	0	16769	957	33	4		4	TSPAN2	1	115600149	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	5513918	115600149	133650472	12	134970											
NBPF10	100132406	broad.mit.edu	37	chr1	145439106	145439106	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgattagagaagagaattGaatacacaaaacctgtacga	9	6	0	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145439106	A	A	145439106	1	1	161	0	1	0	0	0	0	0	0	0	10287	1305	45	4		4	NBPF10	1	145439106	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	29838957	145439106	103811515	13	134971											
ENSA	2029	broad.mit.edu	37	chr1	150599669	150599669	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcaaatgcctgggggcagtCtgcatttcagtttctaacat	11	9	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150599669	G	G	150599669	1	3	161	0	1	0	0	0	0	0	0	0	5178	928	32	4		4	ENSA	1	150599669	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	5160563	150599669	98650952	14	134972											
TCHH	7062	broad.mit.edu	37	chr1	152082861	152082861	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttttctcccgttcctctctCagcagctgctcttcctcctg	5	18	4	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152082861	T	T	152082861	2	4	161	1	0	0	0	0	0	0	0	1	15822	813	29	4		4	TCHH	1	152082861	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	1483192	152082861	97167760	15	134973											
ARHGEF11	9826	broad.mit.edu	37	chr1	157014172	157014172	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctgtagctttggtgtcttGatcaggattgaatcgcttgc	11	8	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157014172	A	A	157014172	1	1	161	0	1	0	0	0	0	0	0	0	898	1305	45	4		4	ARHGEF11	1	157014172	5'UTR	SNP	G	TCGA-50-5935-01A-11D-1753-08	4931311	157014172	92236449	16	134974											
OR10J3	441911	broad.mit.edu	37	chr1	159284287	159284287	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtacatgggggtgtgaagatGatggtccaggcgaataatgg	17	4	0	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159284287	A	A	159284287	3	1	161	1	0	0	0	0	1	0	0	0	11005	1290	45	4	828	4	OR10J3	1	159284287	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	2270115	159284287	89966334	17	134975											
ITLN1	55600	broad.mit.edu	37	chr1	160849075	160849075	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcgaccttactcacaggTccctgcagtccccacagaga	7	16	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160849075	C	C	160849075	1	2	161	0	1	0	0	0	0	0	0	0	7980	1682	58	5		5	ITLN1	1	160849075	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	1564788	160849075	88401546	18	134976											
UFC1	51506	broad.mit.edu	37	chr1	161127116	161127116	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcgagtttgacgtgagtgtGatagagtgggaaatatgaag	15	2	0	5			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161127116	A	A	161127116	1	1	161	0	1	0	0	0	0	0	0	0	17060	1305	45	4		4	UFC1	1	161127116	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	278041	161127116	88123505	19	134977											
FMO3	2328	broad.mit.edu	37	chr1	171077206	171077206	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaactgccatgtatttctCacttttcactcaggactaaa	4	11	4	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171077206	T	T	171077206	1	4	161	0	1	0	0	0	0	0	0	0	6014	841	29	4		4	FMO3	1	171077206	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	9950090	171077206	78173415	20	134978											
KLHL20	27252	broad.mit.edu	37	chr1	173702818	173702818	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagagcttataataatactGccatcttctctctctccccc	3	14	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173702818	A	A	173702818	1	1	161	0	1	0	0	0	0	0	0	0	8446	1334	46	4		4	KLHL20	1	173702818	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	2625612	173702818	75547803	21	134979											
TDRD5	163589	broad.mit.edu	37	chr1	179561683	179561683	+	Intron	DEL	A	-	-													cccactattggtttttttttAaatcttttttcgtgggtttg					rs113832775		TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179561683	-	-	179561683	6	5	161	0	1	1	0	1	0	0	0	0	15855	377	13	0		0	TDRD5	1	179561683	Intron	DEL	A	TCGA-50-5935-01A-11D-1753-08	5858865	179561683	69688938	22	134980											
IVNS1ABP	10625	broad.mit.edu	37	chr1	185270341	185270341	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgttatctgtaagcacaaGagttccatgtttaagatgta	9	5	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185270341	C	C	185270341	1	2	161	0	1	0	0	0	0	0	0	0	8000	957	33	4		4	IVNS1ABP	1	185270341	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	5708658	185270341	63980280	23	134981											
CDC73	79577	broad.mit.edu	37	chr1	193218933	193218933	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggatgtaacagtattAgaactcagctatcacaaacg	8	7	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193218933	T	T	193218933	3	4	161	1	0	0	0	0	1	0	0	0	3115	417	15	5	1553	5	CDC73	1	193218933	Missense_Mutation	SNP	A	TCGA-50-5935-01A-11D-1753-08	7948592	193218933	56031688	24	134982											
ASPM	259266	broad.mit.edu	37	chr1	197111590	197111590	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaatggattcttttgatttCtcgcacttctgtatgttctg	7	7	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197111590	G	G	197111590	3	3	161	1	0	0	0	0	1	0	0	0	1060	922	32	4	8745	4	ASPM	1	197111590	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	3892657	197111590	52139031	25	134983											
KIF21B	23046	broad.mit.edu	37	chr1	200959255	200959255	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgccccagcaggcccagcCctgcggataccttggtctcc	10	19	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200959255	T	T	200959255	1	4	161	0	1	0	0	0	0	0	0	0	8359	638	22	4		4	KIF21B	1	200959255	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	3847665	200959255	48291366	26	134984											
FMOD	2331	broad.mit.edu	37	chr1	203317286	203317286	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagggtcatagggatcgtagTaggtggactgctggctgcgg	18	6	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203317286	A	A	203317286	3	1	161	1	0	0	0	0	1	0	0	0	6017	1638	57	5	1025	5	FMOD	1	203317286	Missense_Mutation	SNP	T	TCGA-50-5935-01A-11D-1753-08	2358031	203317286	45933335	27	134985											
NFASC	23114	broad.mit.edu	37	chr1	204923376	204923376	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggacccccgggtgtccatGaggaggaggtctgggaccct	16	11	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204923376	A	A	204923376	3	1	161	1	0	0	0	0	1	0	0	0	10454	1290	45	4	290	4	NFASC	1	204923376	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	1606090	204923376	44327245	28	134986											
IKBKE	9641	broad.mit.edu	37	chr1	206649522	206649522	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcctccccgtctgtccccAgtggccggcatgaaccacct	10	18	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206649522	G	G	206649522	5	3	161	1	0	0	0	0	0	0	1	0	7682	202	7	5	371	5	IKBKE	1	206649522	Splice_Site	SNP	A	TCGA-50-5935-01A-11D-1753-08	1726146	206649522	42601099	29	134987											
C4BPA	722	broad.mit.edu	37	chr1	207288943	207288945	+	Intron	DEL	ATG	-	-													cgtatatttcaaaatttaaaAtgatgtaaaaagatagacgt							TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	207288945	-	-	207288943	6	5	161	0	1	1	0	1	0	0	0	0	2272	116	4	0		0	C4BPA	1	207288943	Intron	DEL	ATG	TCGA-50-5935-01A-11D-1753-08	639421	207288943	41961678	30	134988											
LAMB3	3914	broad.mit.edu	37	chr1	209789861	209789861	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtctccccaaacagctcctCtgcctctgtcttcacactct	5	18	6	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209789861	T	T	209789861	3	4	161	1	0	0	0	0	1	0	0	0	8684	922	32	4	189	4	LAMB3	1	209789861	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	2500918	209789861	39460760	31	134989											
RPS6KC1	26750	broad.mit.edu	37	chr1	213415373	213415373	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtttacagatcagactgatGatttggctaaagaggaacca	10	6	1	5			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213415373	A	A	213415373	3	1	161	1	0	0	0	0	1	0	0	0	13769	1290	45	4	2596	4	RPS6KC1	1	213415373	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	3625512	213415373	35835248	32	134990											
SMYD2	56950	broad.mit.edu	37	chr1	214510074	214510074	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcatggaagtagctcacGgcaaagatcatccatatatt	7	9	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214510074	A	A	214510074	3	1	161	1	0	0	0	0	1	0	0	0	14936	1116	39	4	1295	4	SMYD2	1	214510074	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	1094701	214510074	34740547	33	134991											
CENPF	1063	broad.mit.edu	37	chr1	214813604	214813604	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagaaaaggaaaacttgcaGagtaaaattaatcacttgga	8	5	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214813604	C	C	214813604	3	2	161	1	0	0	0	0	1	0	0	0	3261	933	33	4	1965	4	CENPF	1	214813604	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	303530	214813604	34437017	34	134992											
RRP15	51018	broad.mit.edu	37	chr1	218504419	218504419	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagaccagaatctgcaagtGactctgatacataaagcatc	8	10	2	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218504419	A	A	218504419	3	1	161	1	0	0	0	0	1	0	0	0	13798	1290	45	4	853	4	RRP15	1	218504419	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	3690815	218504419	30746202	35	134993											
EPRS	2058	broad.mit.edu	37	chr1	220152725	220152725	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatatggcttgtattttAtaaaatgagtgataaacagg	9	2	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220152725	T	T	220152725	1	4	161	0	1	0	0	0	0	0	0	0	5233	464	16	5		5	EPRS	1	220152725	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	1648306	220152725	29097896	36	134994											
CABC1	56997	broad.mit.edu	37	chr1	227153456	227153456	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtaaggtggctgtgtgcCcctggactgcctcacctgcc	14	13	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227153456	T	T	227153456	1	4	161	0	1	0	0	0	0	0	0	0	2553	638	22	4		4	CABC1	1	227153456	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	7000731	227153456	22097165	37	134995											
ZNF678	339500	broad.mit.edu	37	chr1	227843344	227843344	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaccctacaaatgtgaaGaatgtggcaaagcctttaac	8	8	0	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227843344	A	A	227843344	3	1	161	1	0	0	0	0	1	0	0	0	18212	943	33	4	1572	4	ZNF678	1	227843344	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	689888	227843344	21407277	38	134996											
OBSCN	84033	broad.mit.edu	37	chr1	228492141	228492141	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccctccgagatggggacAgacacagcctgaggcaggat	13	11	0	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228492141	G	G	228492141	1	3	161	0	1	0	0	0	0	0	0	0	10907	203	7	5		5	OBSCN	1	228492141	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	648797	228492141	20758480	39	134997											
LYST	1130	broad.mit.edu	37	chr1	235964450	235964450	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccctaaacactaaatatttCaaacttcattaatcatttag	1	9	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	235964450	G	G	235964450	1	3	161	0	1	0	0	0	0	0	0	0	9216	841	29	4		4	LYST	1	235964450	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	7472309	235964450	13286171	40	134998											
FMN2	56776	broad.mit.edu	37	chr1	240555729	240555729	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaataattaaaataagttaCgttatgtagggcagatgttg	9	2	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240555729	T	T	240555729	1	4	161	0	1	0	0	0	0	0	0	0	6008	551	19	4		4	FMN2	1	240555729	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	4591279	240555729	8694892	41	134999											
OR2W5	441932	broad.mit.edu	37	chr1	247655031	247655031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaagcgattcacctttGccctgggggtggctctcctc	13	12	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247655031	T	T	247655031	3	4	161	1	0	0	0	0	1	0	0	0	11128	1319	46	3	604	3	OR2W5	1	247655031	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	7099302	247655031	1595590	42	135000											
OR14C36	127066	broad.mit.edu	37	chr1	248512659	248512659	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacaccttcagcaatgagGtcatgattgttgtctctgct	9	10	3	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248512659	A	A	248512659	3	1	161	1	0	0	0	0	1	0	0	0	11040	1261	44	4	585	4	OR14C36	1	248512659	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	857628	248512659	737962	43	135001											
OR2T34	127068	broad.mit.edu	37	chr1	248737470	248737470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatcttatagagggagaCgtcagagcaggagagcttca	14	7	3	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248737470	T	T	248737470	3	4	161	1	0	0	0	0	1	0	0	0	11119	536	19	4	371	4	OR2T34	1	248737470	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	224811	248737470	513151	44	135002											
PGBD2	267002	broad.mit.edu	37	chr1	249211155	249211155	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgtccagactttggcagttgGactgcatcagatcctcatat	9	11	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	249211155	C	C	249211155	3	2	161	1	0	0	0	0	1	0	0	0	11876	1183	41	4	378	4	PGBD2	1	249211155	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	473685	249211155	39466	45	135003											
PXDN	7837	broad.mit.edu	37	chr2	1647136	1647136	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacatggtgcccctggcacGcaccttcacagcagtcctgc	10	16	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1647136	A	A	1647136	1	1	161	0	1	0	0	0	0	0	0	0	12955	1102	38	4		4	PXDN	2	1647136	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08		1647136	241552237	46	135004											
NBAS	51594	broad.mit.edu	37	chr2	15629148	15629148	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatcttaaaaattccatccTaaataagaatcataaggtca	3	8	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15629148	A	A	15629148	5	1	161	1	0	0	0	0	0	0	1	0	10280	1536	53	5	6326	5	NBAS	2	15629148	Splice_Site	SNP	T	TCGA-50-5935-01A-11D-1753-08	13982012	15629148	227570225	47	135005											
ATAD2B	54454	broad.mit.edu	37	chr2	23980262	23980262	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctggagtttaaaccttcaGaagatttttcaaatattagc	6	7	3	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23980262	T	T	23980262	1	4	161	0	1	0	0	0	0	0	0	0	1076	957	33	3		3	ATAD2B	2	23980262	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	8351114	23980262	219219111	48	135006											
C2orf16	84226	broad.mit.edu	37	chr2	27802858	27802858	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcataaattacagaccacttCggggccttatcttcttatct	5	11	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27802858	T	T	27802858	3	4	161	1	0	0	0	0	1	0	0	0	2179	893	31	4	3421	4	C2orf16	2	27802858	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	3822596	27802858	215396515	49	135007											
RTN4	57142	broad.mit.edu	37	chr2	55237228	55237228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagcagatatacccttgTccttccaatttttcttctga	4	10	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55237228	C	C	55237228	1	2	161	0	1	0	0	0	0	0	0	0	13839	1667	58	5		5	RTN4	2	55237228	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	27434370	55237228	187962145	50	135008											
CCDC88A	55704	broad.mit.edu	37	chr2	55543031	55543031	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcatgtcttggtgcctaaatGaaggacacagtgattaaact	10	7	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55543031	A	A	55543031	1	1	161	0	1	0	0	0	0	0	0	0	2891	1305	45	4		4	CCDC88A	2	55543031	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	305803	55543031	187656342	51	135009											
DCTN1	1639	broad.mit.edu	37	chr2	74604910	74604910	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatatagccagatcaaggaCggctgtaatatgggcccctc	10	11	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74604910	T	T	74604910	1	4	161	0	1	0	0	0	0	0	0	0	4339	551	19	4		4	DCTN1	2	74604910	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	19061879	74604910	168594463	52	135010											
REV1	51455	broad.mit.edu	37	chr2	100027144	100027144	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taattaccaatatcatttctGaggtgagcttacctggcaat	7	8	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100027144	C	C	100027144	1	2	161	0	1	0	0	0	0	0	0	0	13347	1305	45	4		4	REV1	2	100027144	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	25422234	100027144	143172229	53	135011											
LRP1B	53353	broad.mit.edu	37	chr2	141092095	141092095	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggctgcttcttctatatgGgaatgatccccaacaacagt	8	10	2	1	rs145423213	by1000genomes	TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141092095	A	A	141092095	2	1	161	1	0	0	0	0	0	0	0	1	9042	1219	43	4		4	LRP1B	2	141092095	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	41064951	141092095	102107278	54	135012											
KBTBD10	10324	broad.mit.edu	37	chr2	170371506	170371506	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcatgatttatgtctaaAtgactttttattagaagggt	7	5	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170371506	G	G	170371506	1	3	161	0	1	0	0	0	0	0	0	0	8060	116	4	5		5	KBTBD10	2	170371506	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	29279411	170371506	72827867	55	135013											
TTN	7273	broad.mit.edu	37	chr2	179418768	179418768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttactttttgtctggtGtcacggatagtctcttttag	9	8	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179418768	T	T	179418768	3	4	161	1	0	0	0	0	1	0	0	0	16861	1368	48	3	19029	3	TTN	2	179418768	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	9047262	179418768	63780605	56	135014											
TTN	7273	broad.mit.edu	37	chr2	179429186	179429186	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaattcagtttctaataCgttggtaaagctggctttca	8	6	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179429186	T	T	179429186	3	4	161	1	0	0	0	0	1	0	0	0	16861	536	19	4	26454	4	TTN	2	179429186	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	10418	179429186	63770187	57	135015											
TNS1	7145	broad.mit.edu	37	chr2	218712545	218712545	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggctggctcaggggttcCcaacgaatgcccactgggga	16	11	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218712545	T	T	218712545	3	4	161	1	0	0	0	0	1	0	0	0	16466	632	22	4	2955	4	TNS1	2	218712545	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	39283359	218712545	24486828	58	135016											
DNPEP	23549	broad.mit.edu	37	chr2	220239731	220239731	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccacagggggtgtcattcCggaccatgagatcctaggga	13	10	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220239731	T	T	220239731	3	4	161	1	0	0	0	0	1	0	0	0	4719	652	23	4	212	4	DNPEP	2	220239731	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	1527186	220239731	22959642	59	135017											
RBM44	375316	broad.mit.edu	37	chr2	238735994	238735994	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tataccaggattatttttttGagcttcattttcaaatttat	4	5	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238735994	A	A	238735994	1	1	161	0	1	0	0	0	0	0	0	0	13246	1305	45	4		4	RBM44	2	238735994	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	18496263	238735994	4463379	60	135018											
DLEC1	9940	broad.mit.edu	37	chr3	38136442	38136442	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcatgcctggagaaaccttCagcatggacagcatcaagtg	10	11	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38136442	T	T	38136442	2	4	161	1	0	0	0	0	0	0	0	1	4592	825	29	4		4	DLEC1	3	38136442	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08		38136442	159885988	61	135019											
SCN10A	6336	broad.mit.edu	37	chr3	38760174	38760174	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagtccagccagcaccaGgcattggtgaagtacttttt	11	9	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38760174	A	A	38760174	2	1	161	1	0	0	0	0	0	0	0	1	14025	987	35	4		4	SCN10A	3	38760174	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	623732	38760174	159262256	62	135020											
SRPRB	58477	broad.mit.edu	37	chr3	133529917	133529917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaggtttatattgtgaacGtggaactgtattgaaacgtt	10	3	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133529917	A	A	133529917	1	1	161	0	1	0	0	0	0	0	0	0	15281	1160	40	4		4	SRPRB	3	133529917	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	94769743	133529917	64492513	63	135021											
MED12L	116931	broad.mit.edu	37	chr3	151078143	151078143	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actattctatttattagtttCaacaatccaatatccttttt	1	8	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151078143	T	T	151078143	1	4	161	0	1	0	0	0	0	0	0	0	9522	841	29	4		4	MED12L	3	151078143	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	17548226	151078143	46944287	64	135022											
DVL3	1857	broad.mit.edu	37	chr3	183883995	183883995	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catctacattggctctatcaTgaagggtggggccgtggctg	14	9	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183883995	C	C	183883995	3	2	161	1	0	0	0	0	1	0	0	0	4877	1464	51	5	875	5	DVL3	3	183883995	Missense_Mutation	SNP	T	TCGA-50-5935-01A-11D-1753-08	32805852	183883995	14138435	65	135023											
SENP5	205564	broad.mit.edu	37	chr3	196612594	196612594	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagtccaggtgagagtgGcacgattgtggtcaccttga	13	9	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196612594	C	C	196612594	3	2	161	1	0	0	0	0	1	0	0	0	14162	1203	42	4	544	4	SENP5	3	196612594	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	12728599	196612594	1409836	66	135024											
LDB2	9079	broad.mit.edu	37	chr4	16597424	16597424	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgactctttcgagtgtttgaGaatgtaatacaggtcggtca	11	6	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16597424	T	T	16597424	3	4	161	1	0	0	0	0	1	0	0	0	8768	942	33	3	944	3	LDB2	4	16597424	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08		16597424	174556852	67	135025											
GRSF1	2926	broad.mit.edu	37	chr4	71698055	71698055	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctacaatgtctttctcattGcaactataaggaagtcctct	5	10	4	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71698055	C	C	71698055	3	2	161	1	0	0	0	0	1	0	0	0	6875	1311	46	4	683	4	GRSF1	4	71698055	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	55100631	71698055	119456221	68	135026											
FAM13A	10144	broad.mit.edu	37	chr4	89653325	89653325	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctggcttcacattgctatCgtcttctgacccctcctctt	6	15	5	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89653325	A	A	89653325	3	1	161	1	0	0	0	0	1	0	0	0	5498	884	31	3	412	3	FAM13A	4	89653325	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	17955270	89653325	101500951	69	135027											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99214538	99214538	+	Intron	DEL	T	-	-													tcataaggttgagtttctgaTttttttttttctttaagcag							TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99214538	-	-	99214538	6	5	161	0	1	1	0	1	0	0	0	0	13147	1508	52	0		0	RAP1GDS1	4	99214538	Intron	DEL	T	TCGA-50-5935-01A-11D-1753-08	9561213	99214538	91939738	70	135028											
CENPE	1062	broad.mit.edu	37	chr4	104027348	104027348	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttccaaataaggaatgCtggatctccagagaagtgac	9	8	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104027348	A	A	104027348	1	1	161	0	1	0	0	0	0	0	0	0	3260	812	28	3		3	CENPE	4	104027348	3'UTR	SNP	C	TCGA-50-5935-01A-11D-1753-08	4812810	104027348	87126928	71	135029											
EGF	1950	broad.mit.edu	37	chr4	110834393	110834393	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagggctgaggcctccgctCaggcagccgcatctggggtc	15	15	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110834393	T	T	110834393	1	4	161	0	1	0	0	0	0	0	0	0	5002	841	29	4		4	EGF	4	110834393	5'UTR	SNP	C	TCGA-50-5935-01A-11D-1753-08	6807045	110834393	80319883	72	135030											
KIAA1109	84162	broad.mit.edu	37	chr4	123268929	123268929	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctgattcttcagttcctcGaagaggtaacactgctcttt	7	10	4	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123268929	A	A	123268929	3	1	161	1	0	0	0	0	1	0	0	0	8278	1058	37	4	13418	4	KIAA1109	4	123268929	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	12434536	123268929	67885347	73	135031											
ELMOD2	255520	broad.mit.edu	37	chr4	141458637	141458637	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtatttggatgtagaaaGtgtgaggaaaaggccatatg	14	3	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141458637	A	A	141458637	3	1	161	1	0	0	0	0	1	0	0	0	5111	1029	36	4	355	4	ELMOD2	4	141458637	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	18189708	141458637	49695639	74	135032											
ANXA10	11199	broad.mit.edu	37	chr4	169102830	169102830	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttctctctctgatttctcCtagttctctgtgttcgagac	6	12	5	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169102830	G	G	169102830	1	3	161	0	1	0	0	0	0	0	0	0	715	696	24	4		4	ANXA10	4	169102830	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	27644193	169102830	22051446	75	135033											
ZDHHC11	79844	broad.mit.edu	37	chr5	825388	825388	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggtgggacagaaaggaggaGagaaactcatctcagctttg	14	6	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	825388	C	C	825388	1	2	161	0	1	0	0	0	0	0	0	0	17727	957	33	4		4	ZDHHC11	5	825388	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08		825388	180089872	76	135034											
TRIO	7204	broad.mit.edu	37	chr5	14498824	14498824	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctccttaagtcctgagtCtgcccttacactccaagtgg	8	13	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14498824	T	T	14498824	1	4	161	0	1	0	0	0	0	0	0	0	16677	928	32	4		4	TRIO	5	14498824	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	13673436	14498824	166416436	77	135035											
CDH12	1010	broad.mit.edu	37	chr5	21883328	21883328	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaaacactgaatgatgAattagaaattattgaaggca	9	3	0	5			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21883328	C	C	21883328	1	2	161	0	1	0	0	0	0	0	0	0	3128	261	9	5		5	CDH12	5	21883328	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	7384504	21883328	159031932	78	135036											
NNT	23530	broad.mit.edu	37	chr5	43700084	43700084	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctggactactgctgtttcAttctgtagagatcagatagt	9	7	4	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43700084	G	G	43700084	1	3	161	0	1	0	0	0	0	0	0	0	10605	232	8	5		5	NNT	5	43700084	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	21816756	43700084	137215176	79	135037											
BDP1	55814	broad.mit.edu	37	chr5	70840467	70840467	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtaatcccggcactttggGaggccaagacgggaggatca	14	10	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70840467	A	A	70840467	1	1	161	0	1	0	0	0	0	0	0	0	1400	1189	41	4		4	BDP1	5	70840467	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	27140383	70840467	110074793	80	135038											
UTP15	84135	broad.mit.edu	37	chr5	72868505	72868505	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtacacctgtttactgcttGaggaaatgagttatttcagc	9	7	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72868505	C	C	72868505	1	2	161	0	1	0	0	0	0	0	0	0	17224	1305	45	4		4	UTP15	5	72868505	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	2028038	72868505	108046755	81	135039											
GPR98	84059	broad.mit.edu	37	chr5	90004586	90004586	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtttctgagggttaattActttgagagtataactaaag	9	4	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90004586	T	T	90004586	1	4	161	0	1	0	0	0	0	0	0	0	6787	406	14	5		5	GPR98	5	90004586	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	17136081	90004586	90910674	82	135040											
FBN2	2201	broad.mit.edu	37	chr5	127648361	127648361	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcatgtctcacaggggtttCcccaggcctttcccagagag	12	13	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127648361	T	T	127648361	3	4	161	1	0	0	0	0	1	0	0	0	5760	855	30	4	4010	4	FBN2	5	127648361	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	37643775	127648361	53266899	83	135041											
PKD2L2	27039	broad.mit.edu	37	chr5	137230163	137230163	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatacttctaggagttcccaGagttcgtcaactaaaagtcc	7	10	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137230163	C	C	137230163	3	2	161	1	0	0	0	0	1	0	0	0	12063	942	33	4	403	4	PKD2L2	5	137230163	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	9581802	137230163	43685097	84	135042											
SH3TC2	79628	broad.mit.edu	37	chr5	148427473	148427473	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattctccagtgcccagagCcgcctccgagcagcttcctg	9	17	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148427473	T	T	148427473	2	4	161	1	0	0	0	0	0	0	0	1	14375	726	26	4		4	SH3TC2	5	148427473	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	11197310	148427473	32487787	85	135043											
FAF2	23197	broad.mit.edu	37	chr5	175906151	175906151	+	Intron	DEL	T	-	-													actcacacgtatactgttggTttttctctaagtaacttgtt							TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	175906151	-	-	175906151	6	5	161	0	1	1	0	1	0	0	0	0	5416	1740	60	0		0	FAF2	5	175906151	Intron	DEL	T	TCGA-50-5935-01A-11D-1753-08	27478678	175906151	5009109	86	135044											
LRRC16A	55604	broad.mit.edu	37	chr6	25426819	25426819	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaatggatcactgcaagatCatgatctttcttgaattctt	6	7	5	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25426819	G	G	25426819	1	3	161	0	1	0	0	0	0	0	0	0	9058	841	29	4		4	LRRC16A	6	25426819	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08		25426819	145688248	87	135045											
OR12D2	26529	broad.mit.edu	37	chr6	29364564	29364564	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttctcttcgtggttttcCtcaccatctacttcatcagt	4	13	5	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29364564	T	T	29364564	3	4	161	1	0	0	0	0	1	0	0	0	11025	681	24	4	90	4	OR12D2	6	29364564	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	3937745	29364564	141750503	88	135046											
FLOT1	10211	broad.mit.edu	37	chr6	30708892	30708892	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctcttggatccactgtctCtcacagactagtgtgggcct	10	12	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30708892	T	T	30708892	1	4	161	0	1	0	0	0	0	0	0	0	5994	928	32	4		4	FLOT1	6	30708892	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	1344328	30708892	140406175	89	135047											
COL11A2	1302	broad.mit.edu	37	chr6	33145988	33145988	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacggtgaggggaggagaCggcatgaatggataaaactg	16	5	1	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33145988	T	T	33145988	1	4	161	0	1	0	0	0	0	0	0	0	3700	551	19	4		4	COL11A2	6	33145988	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	2437096	33145988	137969079	90	135048											
SFRS3	6428	broad.mit.edu	37	chr6	36568787	36568788	+	Intron	INS	-	TC	TC													tcttttttttctttttttttINSttttttttttttttttggac							TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	36568788	TC	TC	36568787	6	5	161	0	1	1	1	0	0	0	0	0	14291	1856	64	0		0	SFRS3	6	36568787	Intron	INS	-	TCGA-50-5935-01A-11D-1753-08	3422799	36568787	134546280	91	135049											
PKHD1	5314	broad.mit.edu	37	chr6	51938342	51938342	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacatgtattagttttcctGtttgaagaagaattttttta	6	3	0	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51938342	A	A	51938342	1	1	161	0	1	0	0	0	0	0	0	0	12066	1392	48	4		4	PKHD1	6	51938342	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	15369555	51938342	119176725	92	135050											
PHF3	23469	broad.mit.edu	37	chr6	64422504	64422504	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagatggagatagttgcCggaatggagaaaaacacatg	13	5	0	3	rs147627550		TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64422504	T	T	64422504	3	4	161	1	0	0	0	0	1	0	0	0	11931	643	23	4	5078	4	PHF3	6	64422504	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	12484162	64422504	106692563	93	135051											
IMPG1	3617	broad.mit.edu	37	chr6	76743999	76744000	+	Intron	DEL	CA	-	-													gatctttttaaattcaaaagCacacacacacacactctatt							TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76744000	-	-	76743999	6	5	161	0	1	1	0	1	0	0	0	0	7798	725	25	0		0	IMPG1	6	76743999	Intron	DEL	CA	TCGA-50-5935-01A-11D-1753-08	12321495	76743999	94371068	94	135052											
C6orf170	221322	broad.mit.edu	37	chr6	121629166	121629166	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagagacacggtcagtttttCgcagagagtagtccaatttt	10	7	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121629166	A	A	121629166	4	1	161	1	0	0	0	0	0	1	0	0	2367	893	31	3	3239	3	C6orf170	6	121629166	Nonsense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	44885167	121629166	49485901	95	135053											
TRMT11	60487	broad.mit.edu	37	chr6	126319848	126319848	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtgagcaagttttctttCtacctatgtcagtttgtttt	9	6	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126319848	T	T	126319848	1	4	161	0	1	0	0	0	0	0	0	0	16687	928	32	4		4	TRMT11	6	126319848	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	4690682	126319848	44795219	96	135054											
MAP7	9053	broad.mit.edu	37	chr6	136693819	136693819	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgattggttttacacacaaGagtgccagaggagcagttga	13	6	0	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136693819	C	C	136693819	1	2	161	0	1	0	0	0	0	0	0	0	9358	957	33	4		4	MAP7	6	136693819	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	10373971	136693819	34421248	97	135055											
MLLT4	4301	broad.mit.edu	37	chr6	168344625	168344625	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcttcttctcctagggcgGcagaactcatgacaagaaca	8	11	4	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168344625	A	A	168344625	3	1	161	1	0	0	0	0	1	0	0	0	9722	1203	42	4	3321	4	MLLT4	6	168344625	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	31650806	168344625	2770442	98	135056											
NXPH1	30010	broad.mit.edu	37	chr7	8790640	8790640	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctcttctgttttcaggtCacatgtgccaatttaacgaa	6	9	4	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8790640	G	G	8790640	2	3	161	1	0	0	0	0	0	0	0	1	10885	813	29	4		4	NXPH1	7	8790640	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08		8790640	150348023	99	135057											
TMEM195	392636	broad.mit.edu	37	chr7	15601385	15601385	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcttctaatgtttggaatGaagtttcactgggtttcatc	8	8	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15601385	A	A	15601385	3	1	161	1	0	0	0	0	1	0	0	0	16240	1294	45	4	1303	4	TMEM195	7	15601385	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	6810745	15601385	143537278	100	135058											
C7orf10	79783	broad.mit.edu	37	chr7	40234681	40234681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcaaccccacacccttGtcagttaaaaggttttccag	5	12	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40234681	T	T	40234681	1	4	161	0	1	0	0	0	0	0	0	0	2401	1392	48	3		3	C7orf10	7	40234681	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	24633296	40234681	118903982	101	135059											
STEAP1	26872	broad.mit.edu	37	chr7	89791166	89791166	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagggaagagtgtagaaggaGattcacattcaggaaataac	12	5	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89791166	T	T	89791166	1	4	161	0	1	0	0	0	0	0	0	0	15395	957	33	3		3	STEAP1	7	89791166	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	49556485	89791166	69347497	102	135060											
ZCWPW1	55063	broad.mit.edu	37	chr7	100014672	100014672	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attctgtgttcaacttgcctCactgaaataaacttacccat	4	11	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100014672	T	T	100014672	1	4	161	0	1	0	0	0	0	0	0	0	17723	841	29	4		4	ZCWPW1	7	100014672	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	10223506	100014672	59123991	103	135061											
MUC17	140453	broad.mit.edu	37	chr7	100684569	100684569	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtatgcctgtcagcaccaCaacggtggccagttctgaaa	10	11	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100684569	T	T	100684569	3	4	161	1	0	0	0	0	1	0	0	0	10068	478	17	4	9882	4	MUC17	7	100684569	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	669897	100684569	58454094	104	135062											
RELN	5649	broad.mit.edu	37	chr7	103234382	103234382	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttgatagctttgaaaacAagaaaggaattttcatttca	6	4	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103234382	G	G	103234382	1	3	161	0	1	0	0	0	0	0	0	0	13328	145	5	5		5	RELN	7	103234382	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	2549813	103234382	55904281	105	135063											
MLL5	55904	broad.mit.edu	37	chr7	104722395	104722395	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaaccagaagtttagtatCagcctctattacagcattgc	7	9	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104722395	A	A	104722395	1	1	161	0	1	0	0	0	0	0	0	0	9717	841	29	3		3	MLL5	7	104722395	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	1488013	104722395	54416268	106	135064											
TBXAS1	6916	broad.mit.edu	37	chr7	139575437	139575437	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatggacctctgtgtggGtaagaaggaaactcaacgtt	12	7	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139575437	A	A	139575437	5	1	161	1	0	0	0	0	0	0	1	0	15786	1275	44	4	250	4	TBXAS1	7	139575437	Splice_Site	SNP	G	TCGA-50-5935-01A-11D-1753-08	34853042	139575437	19563226	107	135065											
KRBA1	84626	broad.mit.edu	37	chr7	149419892	149419892	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaatttctcctgggaacaGccccttgcaaggcctcatca	9	13	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149419892	A	A	149419892	3	1	161	1	0	0	0	0	1	0	0	0	8510	971	34	4	639	4	KRBA1	7	149419892	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	9844455	149419892	9718771	108	135066											
SSPO	23145	broad.mit.edu	37	chr7	149523250	149523250	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcagttgctcggcccCctgtggtgggggcactatgg	17	11	0	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149523250	T	T	149523250	3	4	161	1	0	0	0	0	1	0	0	0	15307	623	22	4	14726	4	SSPO	7	149523250	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	103358	149523250	9615413	109	135067											
PCM1	5108	broad.mit.edu	37	chr8	17804748	17804748	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagaaaatttgaagaaacaAcatgatttattaaaaagaat	5	2	0	5			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17804748	G	G	17804748	2	3	161	1	0	0	0	0	0	0	0	1	11678	40	2	5		5	PCM1	8	17804748	Silent	SNP	A	TCGA-50-5935-01A-11D-1753-08		17804748	128559274	110	135068											
BMP1	649	broad.mit.edu	37	chr8	22058779	22058779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttggacggaatgggatgGgggcttcggtgcccaccaac	15	11	0	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22058779	A	A	22058779	1	1	161	0	1	0	0	0	0	0	0	0	1462	1247	43	4		4	BMP1	8	22058779	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	4254031	22058779	124305243	111	135069											
ST18	9705	broad.mit.edu	37	chr8	53079328	53079328	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtttgtttccattcctaAttccaaattgggagacaaag	7	7	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53079328	C	C	53079328	1	2	161	0	1	0	0	0	0	0	0	0	15330	116	4	5		5	ST18	8	53079328	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	31020549	53079328	93284694	112	135070											
ARFGEF1	10565	broad.mit.edu	37	chr8	68111195	68111195	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgtttattccaagttcctGttcaggtggttgtgatatct	9	7	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68111195	C	C	68111195	3	2	161	1	0	0	0	0	1	0	0	0	854	1386	48	4	29	4	ARFGEF1	8	68111195	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	15031867	68111195	78252827	113	135071											
PREX2	80243	broad.mit.edu	37	chr8	68995474	68995474	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttgtaatttctctcttaGatggctggcatggaagtcgg	11	6	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68995474	C	C	68995474	5	2	161	1	0	0	0	0	0	0	1	0	12583	956	33	4	1948	4	PREX2	8	68995474	Splice_Site	SNP	G	TCGA-50-5935-01A-11D-1753-08	884279	68995474	77368548	114	135072											
RBM12B	389677	broad.mit.edu	37	chr8	94746054	94746054	+	Frame_Shift_Del	DEL	G	-	-													caggaggtctaaaattgtcaGgaagtctagggtcctcctcc							TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94746054	-	-	94746054	7	5	161	1	0	1	0	1	0	0	0	0	13222	1000	35	0	424	0	RBM12B	8	94746054	Frame_Shift_Del	DEL	G	TCGA-50-5935-01A-11D-1753-08	25750580	94746054	51617968	115	135073											
VPS13B	157680	broad.mit.edu	37	chr8	100866417	100866417	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgaaagaggacccatcttCaccactgcgaggcagcttgt	10	11	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100866417	T	T	100866417	2	4	161	1	0	0	0	0	0	0	0	1	17317	825	29	4		4	VPS13B	8	100866417	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	6120363	100866417	45497605	116	135074											
COL22A1	169044	broad.mit.edu	37	chr8	139815074	139815074	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggtcccccacgcccgCcctgaggttcagccatgtag	11	18	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139815074	T	T	139815074	1	4	161	0	1	0	0	0	0	0	0	0	3713	754	26	4		4	COL22A1	8	139815074	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	38948657	139815074	6548948	117	135075											
GPAA1	8733	broad.mit.edu	37	chr8	145140569	145140569	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagctgggctgcatcgccctCaccaacttctcactgggctt	9	16	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145140569	T	T	145140569	2	4	161	1	0	0	0	0	0	0	0	1	6652	813	29	4		4	GPAA1	8	145140569	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	5325495	145140569	1223453	118	135076											
SHARPIN	81858	broad.mit.edu	37	chr8	145158011	145158011	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcccaccgctgagcttcctGagggttgaggaagtgcaggc	15	11	0	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145158011	C	C	145158011	3	2	161	1	0	0	0	0	1	0	0	0	14380	1299	45	4	872	4	SHARPIN	8	145158011	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	17442	145158011	1206011	119	135077											
KANK1	23189	broad.mit.edu	37	chr9	713067	713067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggcagataaatattaaCgacaactatctggttggtct	11	6	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	713067	A	A	713067	3	1	161	1	0	0	0	0	1	0	0	0	8046	535	19	3	2307	3	KANK1	9	713067	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08		713067	140500364	120	135078											
SMARCA2	6595	broad.mit.edu	37	chr9	2182201	2182201	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggagaaggatgtcatgcttCtctgtcacaacgctcagacg	11	10	4	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2182201	G	G	2182201	3	3	161	1	0	0	0	0	1	0	0	0	14883	913	32	4	4538	4	SMARCA2	9	2182201	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	1469134	2182201	139031230	121	135079											
KIAA2026	158358	broad.mit.edu	37	chr9	5920916	5920916	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagtctatttgacaaaaTaggcataattcttgaagagg	9	5	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5920916	C	C	5920916	3	2	161	1	0	0	0	0	1	0	0	0	8340	1406	49	5	1235	5	KIAA2026	9	5920916	Missense_Mutation	SNP	T	TCGA-50-5935-01A-11D-1753-08	3738715	5920916	135292515	122	135080											
FRMPD1	22844	broad.mit.edu	37	chr9	37744348	37744348	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctattaacctctttttttTgtgctttttaatgtattttt	3	6	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37744348	G	G	37744348	1	3	161	0	1	0	0	0	0	0	0	0	6117	1827	63	5		5	FRMPD1	9	37744348	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	31823432	37744348	103469083	123	135081											
NAA35	60560	broad.mit.edu	37	chr9	88593302	88593302	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atactacaaaaggaggtaatTgttcaatttgctcctactct	6	8	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88593302	A	A	88593302	1	1	161	0	1	0	0	0	0	0	0	0	10217	1827	63	5		5	NAA35	9	88593302	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	50848954	88593302	52620129	124	135082											
TMEM38B	55151	broad.mit.edu	37	chr9	108522400	108522400	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagggttgccatcgatgcGctacaattgtgtcgtttgtt	13	7	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108522400	A	A	108522400	1	1	161	0	1	0	0	0	0	0	0	0	16283	1102	38	4		4	TMEM38B	9	108522400	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	19929098	108522400	32691031	125	135083											
FAM166A	401565	broad.mit.edu	37	chr9	140138730	140138730	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaggtcacagtgggggtttCtaaacaggaactggggagac	15	8	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140138730	T	T	140138730	3	4	161	1	0	0	0	0	1	0	0	0	5526	913	32	4	203	4	FAM166A	9	140138730	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	31616330	140138730	1074701	126	135084											
AKR1C3	8644	broad.mit.edu	37	chr10	5139595	5139595	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttgctcaagcattcattCaaaatcacctccattcttta	3	11	5	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5139595	G	G	5139595	1	3	161	0	1	0	0	0	0	0	0	0	471	841	29	4		4	AKR1C3	10	5139595	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08		5139595	130395152	127	135085											
ACBD5	91452	broad.mit.edu	37	chr10	27506908	27506908	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaattatttggggacaataCcttggtgaatgcaaacagca	10	6	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27506908	A	A	27506908	5	1	161	1	0	0	0	0	0	0	1	0	125	521	18	3	775	3	ACBD5	10	27506908	Splice_Site	SNP	C	TCGA-50-5935-01A-11D-1753-08	22367313	27506908	108027839	128	135086											
EPC1	80314	broad.mit.edu	37	chr10	32561036	32561036	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccatcagttgttctgatgtCaccaaagcagaagcagcaaa	8	11	3	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32561036	T	T	32561036	2	4	161	1	0	0	0	0	0	0	0	1	5202	813	29	4		4	EPC1	10	32561036	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	5054128	32561036	102973711	129	135087											
ANUBL1	93550	broad.mit.edu	37	chr10	46113731	46113731	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttagagaaaggacaccttGattaacacaggcataaaatc	8	7	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46113731	C	C	46113731	1	2	161	0	1	0	0	0	0	0	0	0	713	1305	45	4		4	ANUBL1	10	46113731	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	13552695	46113731	89421016	130	135088											
NRG3	10718	broad.mit.edu	37	chr10	84744853	84744853	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacactgtgtttctttttcaGgtattcatccagtggtttaa	7	7	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84744853	C	C	84744853	5	2	161	1	0	0	0	0	0	0	1	0	10744	1014	35	4	1861	4	NRG3	10	84744853	Splice_Site	SNP	G	TCGA-50-5935-01A-11D-1753-08	38631122	84744853	50789894	131	135089											
TLL2	7093	broad.mit.edu	37	chr10	98138709	98138709	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcccgcccccccaacaactgGaggtccagcctcaccctctt	7	21	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98138709	C	C	98138709	1	2	161	0	1	0	0	0	0	0	0	0	16069	1189	41	4		4	TLL2	10	98138709	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	13393856	98138709	37396038	132	135090											
COL17A1	1308	broad.mit.edu	37	chr10	105798252	105798252	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggcccagggggccctggCgggcctgacacgtacatggt	19	12	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105798252	T	T	105798252	2	4	161	1	0	0	0	0	0	0	0	1	3706	755	27	4		4	COL17A1	10	105798252	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	7659543	105798252	29736495	133	135091											
ACSL5	51703	broad.mit.edu	37	chr10	114176510	114176510	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgggctcatcattatTcagcaatccaattcatgact	5	11	5	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114176510	C	C	114176510	1	2	161	0	1	0	0	0	0	0	0	0	180	1798	62	5		5	ACSL5	10	114176510	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	8378258	114176510	21358237	134	135092											
ATHL1	80162	broad.mit.edu	37	chr11	293450	293450	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggctgacaagatcaaggtAccctttgacgtggagcagaa	13	8	1	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	293450	G	G	293450	2	3	161	1	0	0	0	0	0	0	0	1	1108	378	14	5		5	ATHL1	11	293450	Silent	SNP	A	TCGA-50-5935-01A-11D-1753-08		293450	134713066	135	135093											
NUP98	4928	broad.mit.edu	37	chr11	3714470	3714470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccacatatacctgaaatgCttcttcatacatgctgagcg	8	11	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3714470	T	T	3714470	3	4	161	1	0	0	0	0	1	0	0	0	10868	797	28	4	1127	4	NUP98	11	3714470	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	3421020	3714470	131292046	136	135094											
OR56A3	390083	broad.mit.edu	37	chr11	5969263	5969263	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accttcattctgcgagctgtGctgagactcaaggcagaggg	13	10	3	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5969263	C	C	5969263	2	2	161	1	0	0	0	0	0	0	0	1	11228	1306	46	4		4	OR56A3	11	5969263	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	2254793	5969263	129037253	137	135095											
PDE3B	5140	broad.mit.edu	37	chr11	14880641	14880641	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatcatcatgctgcgtcagCttggaatctatatctttctc	6	10	6	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14880641	T	T	14880641	3	4	161	1	0	0	0	0	1	0	0	0	11732	797	28	4	2623	4	PDE3B	11	14880641	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	8911378	14880641	120125875	138	135096											
HTATIP2	10553	broad.mit.edu	37	chr11	20398080	20398080	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caagtagtaatctttaagatGaacttgctgctttttggaaa	8	5	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20398080	C	C	20398080	1	2	161	0	1	0	0	0	0	0	0	0	7502	1305	45	4		4	HTATIP2	11	20398080	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	5517439	20398080	114608436	139	135097											
MPPED2	744	broad.mit.edu	37	chr11	30433004	30433004	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcacattccaatagggCatttagagcttcaggaaccc	7	13	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30433004	A	A	30433004	1	1	161	0	1	0	0	0	0	0	0	0	9836	725	25	3		3	MPPED2	11	30433004	3'UTR	SNP	C	TCGA-50-5935-01A-11D-1753-08	10034924	30433004	104573512	140	135098											
LRP4	4038	broad.mit.edu	37	chr11	46884071	46884071	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgggattactcagcagcCgttactgacttatttgggca	11	8	1	2	rs142507948	by1000genomes	TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46884071	T	T	46884071	1	4	161	0	1	0	0	0	0	0	0	0	9046	667	23	4		4	LRP4	11	46884071	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	16451067	46884071	88122445	141	135099											
OR5J2	282775	broad.mit.edu	37	chr11	55944458	55944458	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtgatggcctatgaccGctatgtggccattgtgagtc	13	9	1	3	rs151315491		TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944458	A	A	55944458	3	1	161	1	0	0	0	0	1	0	0	0	11259	1087	38	4	367	4	OR5J2	11	55944458	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	9060387	55944458	79062058	142	135100											
SCGB1D1	10648	broad.mit.edu	37	chr11	61957768	61957768	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagccaccatgaggctgtcGgtgtgtctcctgctgctcac	11	13	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61957768	A	A	61957768	2	1	161	1	0	0	0	0	0	0	0	1	14008	1103	39	4		4	SCGB1D1	11	61957768	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	6013310	61957768	73048748	143	135101											
AHNAK	79026	broad.mit.edu	37	chr11	62284242	62284242	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctttgtggaaactgacaGctccacctcgggaagctgga	11	10	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62284242	A	A	62284242	2	1	161	1	0	0	0	0	0	0	0	1	414	962	34	4		4	AHNAK	11	62284242	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	326474	62284242	72722274	144	135102											
B3GAT3	26229	broad.mit.edu	37	chr11	62384436	62384436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccgcacctggtctcttgCccatccccatcctggtgctc	9	18	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62384436	T	T	62384436	1	4	161	0	1	0	0	0	0	0	0	0	1260	754	26	4		4	B3GAT3	11	62384436	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	100194	62384436	72622080	145	135103											
ACER3	55331	broad.mit.edu	37	chr11	76730737	76730737	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttgcatgaattcaaaatGaatctgaaaagctttccccc	6	9	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76730737	T	T	76730737	1	4	161	0	1	0	0	0	0	0	0	0	140	1305	45	3		3	ACER3	11	76730737	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	14346301	76730737	58275779	146	135104											
SIK2	23235	broad.mit.edu	37	chr11	111590634	111590634	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggccgaggaagaccccgctCatgcctttgaggcatttcag	12	12	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111590634	T	T	111590634	3	4	161	1	0	0	0	0	1	0	0	0	14431	826	29	4	1440	4	SIK2	11	111590634	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	34859897	111590634	23415882	147	135105											
HTR3B	9177	broad.mit.edu	37	chr11	113803630	113803630	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcatctctttctctctggGaaagtcaattgtttgtgttg	10	7	4	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113803630	A	A	113803630	1	1	161	0	1	0	0	0	0	0	0	0	7515	1189	41	4		4	HTR3B	11	113803630	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	2212996	113803630	21202886	148	135106											
RBM7	10179	broad.mit.edu	37	chr11	114272522	114272522	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgtctgttccttatgcaAtgaatctacttaatggaatc	7	7	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114272522	G	G	114272522	3	3	161	1	0	0	0	0	1	0	0	0	13253	101	4	5	205	5	RBM7	11	114272522	Missense_Mutation	SNP	A	TCGA-50-5935-01A-11D-1753-08	468892	114272522	20733994	149	135107											
OAF	220323	broad.mit.edu	37	chr11	120096462	120096462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcacccagctgcagcaCaatgagatcatccccagtga	8	13	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120096462	A	A	120096462	3	1	161	1	0	0	0	0	1	0	0	0	10893	477	17	3	330	3	OAF	11	120096462	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	5823940	120096462	14910054	150	135108											
WNK1	65125	broad.mit.edu	37	chr12	970206	970206	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgggtatgtctgtgaaggtGatcacaagaccatggctaaa	12	7	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	970206	C	C	970206	3	2	161	1	0	0	0	0	1	0	0	0	17504	1290	45	4	1674	4	WNK1	12	970206	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08		970206	132881689	151	135109											
CLSTN3	9746	broad.mit.edu	37	chr12	7295905	7295905	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcgcctcaccactgctgtCaagtgagtgttgggtggggc	15	11	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7295905	A	A	7295905	2	1	161	1	0	0	0	0	0	0	0	1	3595	813	29	3		3	CLSTN3	12	7295905	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	6325699	7295905	126555990	152	135110											
PRB4	5545	broad.mit.edu	37	chr12	11461564	11461564	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggtggtctttctggctttCctggaggaggtggggtacct	18	7	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11461564	T	T	11461564	3	4	161	1	0	0	0	0	1	0	0	0	12551	855	30	4	394	4	PRB4	12	11461564	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	4165659	11461564	122390331	153	135111			1	104		4	4	127	C		1.817919e-10
PRB4	5545	broad.mit.edu	37	chr12	11461628	11461628	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtggtctttctggctttcCtggatgaggtgggggacctt	17	7	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11461628	T	T	11461628	3	4	161	1	0	0	0	0	1	0	0	0	12551	690	24	4	458	4	PRB4	12	11461628	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	64	11461628	122390267	154	135112			1	104		4	4	127	C		1.817919e-10
PRB4	5545	broad.mit.edu	37	chr12	11461679	11461679	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccttgtgggggtcgtcCttctggctttcctggaggag	15	11	1	0	rs77184113		TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11461679	A	A	11461679	4	1	161	1	0	0	0	0	0	1	0	0	12551	690	24	2	509	2	PRB4	12	11461679	Nonsense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	51	11461679	122390216	155	135113			1	104		4	4	127	C		1.817919e-10
PRB4	5545	broad.mit.edu	37	chr12	11461690	11461690	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggtcgtccttctggctttCctggaggaggtgggggacct	18	9	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11461690	T	T	11461690	3	4	161	1	0	0	0	0	1	0	0	0	12551	855	30	4	520	4	PRB4	12	11461690	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	11	11461690	122390205	156	135114			1	104		4	4	127	C		1.817919e-10
PCBP2	5094	broad.mit.edu	37	chr12	53852869	53852869	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctaattttgaggaatttttCatgagcttttatctttacat	6	5	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53852869	G	G	53852869	1	3	161	0	1	0	0	0	0	0	0	0	11595	841	29	4		4	PCBP2	12	53852869	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	42391179	53852869	79999026	157	135115											
RAB3IP	117177	broad.mit.edu	37	chr12	70178554	70178554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaaagtgcgagatcaaCttggacaggaattggaagaa	11	5	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70178554	A	A	70178554	3	1	161	1	0	0	0	0	1	0	0	0	13046	565	20	3	627	3	RAB3IP	12	70178554	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	16325685	70178554	63673341	158	135116											
IGF1	3479	broad.mit.edu	37	chr12	102811743	102811743	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttggccaacctttccttctCtgagacttcgtgttcttgtt	7	11	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102811743	G	G	102811743	3	3	161	1	0	0	0	0	1	0	0	0	7640	912	32	4	214	4	IGF1	12	102811743	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	32633189	102811743	31040152	159	135117											
NOS1	4842	broad.mit.edu	37	chr12	117723102	117723102	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacagatgtagttgaacatCccgtgggccgtggtgcagtc	13	9	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117723102	T	T	117723102	2	4	161	1	0	0	0	0	0	0	0	1	10636	842	30	4		4	NOS1	12	117723102	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	14911359	117723102	16128793	160	135118											
ATP12A	479	broad.mit.edu	37	chr13	25268512	25268512	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcaggagggtgtgttttGggtcctatgctgagggcatg	18	5	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25268512	T	T	25268512	1	4	161	0	1	0	0	0	0	0	0	0	1126	1363	47	2		2	ATP12A	13	25268512	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08		25268512	89901366	161	135119											
NEK5	341676	broad.mit.edu	37	chr13	52684572	52684572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggagaaaatgtcatgttGtttgaggtacttcaagaaaa	10	3	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52684572	A	A	52684572	1	1	161	0	1	0	0	0	0	0	0	0	10422	1392	48	4		4	NEK5	13	52684572	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	27416060	52684572	62485306	162	135120											
MYO16	23026	broad.mit.edu	37	chr13	109610094	109610094	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggagcgttctctgaacaggGagaaattggctgttttgaaa	14	5	1	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109610094	A	A	109610094	3	1	161	1	0	0	0	0	1	0	0	0	10158	1175	41	4	1980	4	MYO16	13	109610094	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	56925522	109610094	5559784	163	135121											
MYH6	4624	broad.mit.edu	37	chr14	23861783	23861783	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagtcacctggttttccttCagtttcttctgtagttgaag	8	8	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23861783	G	G	23861783	2	3	161	1	0	0	0	0	0	0	0	1	10132	813	29	4		4	MYH6	14	23861783	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08		23861783	83487757	164	135122											
BAZ1A	11177	broad.mit.edu	37	chr14	35227951	35227951	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaaaaggccagctgtcatCatgtcgtaccaattctacaa	6	11	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35227951	T	T	35227951	3	4	161	1	0	0	0	0	1	0	0	0	1334	826	29	4	337	4	BAZ1A	14	35227951	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	11366168	35227951	72121589	165	135123											
LRFN5	145581	broad.mit.edu	37	chr14	42360699	42360699	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagcatctgtgctggtattCatcattattctgatgatccg	9	8	4	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42360699	G	G	42360699	3	3	161	1	0	0	0	0	1	0	0	0	9028	825	29	4	1638	4	LRFN5	14	42360699	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	7132748	42360699	64988841	166	135124											
CDKL1	8814	broad.mit.edu	37	chr14	50856836	50856836	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaaatttactaggtccCttgcccctacctgccacata	5	15	0	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50856836	G	G	50856836	1	3	161	0	1	0	0	0	0	0	0	0	3183	696	24	4		4	CDKL1	14	50856836	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	8496137	50856836	56492704	167	135125											
SPTB	6710	broad.mit.edu	37	chr14	65235692	65235692	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccattgtggcacctccccaTtcccctactcctgcgggggt	9	18	0	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65235692	G	G	65235692	1	3	161	0	1	0	0	0	0	0	0	0	15236	1508	52	5		5	SPTB	14	65235692	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	14378856	65235692	42113848	168	135126											
ZFP36L1	677	broad.mit.edu	37	chr14	69259641	69259641	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgaagatggtggcagacacGagggtggtggtcatcctgtg	17	7	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69259641	C	C	69259641	2	2	161	1	0	0	0	0	0	0	0	1	17772	1045	37	4		4	ZFP36L1	14	69259641	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	4023949	69259641	38089899	169	135127											
SLC39A9	55334	broad.mit.edu	37	chr14	69908920	69908920	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattggtgtttccctcgttCtgggcttcgttttcatgttg	10	8	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69908920	G	G	69908920	3	3	161	1	0	0	0	0	1	0	0	0	14739	912	32	4	350	4	SLC39A9	14	69908920	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	649279	69908920	37440620	170	135128											
FOXN3	1112	broad.mit.edu	37	chr14	89756867	89756867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttactttccctttcatcGggagagctgatttttcacaa	7	9	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89756867	T	T	89756867	1	4	161	0	1	0	0	0	0	0	0	0	6081	1131	39	1		1	FOXN3	14	89756867	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	19847947	89756867	17592673	171	135129											
ASB2	51676	broad.mit.edu	37	chr14	94413798	94413798	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaaactccaccacctcctCatgctcattcttgcaggcct	5	17	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94413798	G	G	94413798	3	3	161	1	0	0	0	0	1	0	0	0	1027	835	29	4	974	4	ASB2	14	94413798	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	4656931	94413798	12935742	172	135130											
BDKRB2	624	broad.mit.edu	37	chr14	96707415	96707415	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatgcagatcatgcaggtGctgcggaacaacgagatgca	13	9	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96707415	T	T	96707415	2	4	161	1	0	0	0	0	0	0	0	1	1398	1306	46	3		3	BDKRB2	14	96707415	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	2293617	96707415	10642125	173	135131											
ATG2B	55102	broad.mit.edu	37	chr14	96761535	96761535	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgcatgtttgaaaaatTagatatgcttcttcttagca	7	5	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96761535	C	C	96761535	1	2	161	0	1	0	0	0	0	0	0	0	1098	1769	61	5		5	ATG2B	14	96761535	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	54120	96761535	10588005	174	135132											
MTMR15	22909	broad.mit.edu	37	chr15	31217958	31217958	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagggacttttgctgacctGaggctaatagatgttattct	10	7	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31217958	A	A	31217958	1	1	161	0	1	0	0	0	0	0	0	0	10037	1305	45	4		4	MTMR15	15	31217958	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08		31217958	71313434	175	135133											
TCF12	6938	broad.mit.edu	37	chr15	57383997	57383997	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccccctagggttttacagAcagccctcattacagtgatc	7	14	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57383997	G	G	57383997	3	3	161	1	0	0	0	0	1	0	0	0	15809	275	10	5	247	5	TCF12	15	57383997	Missense_Mutation	SNP	A	TCGA-50-5935-01A-11D-1753-08	26166039	57383997	45147395	176	135134											
AP3B2	8120	broad.mit.edu	37	chr15	83334362	83334362	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtcaggcaggtagcagCagtgagggaaagctctggga	18	6	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83334362	A	A	83334362	1	1	161	0	1	0	0	0	0	0	0	0	747	725	25	3		3	AP3B2	15	83334362	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	25950365	83334362	19197030	177	135135											
SV2B	9899	broad.mit.edu	37	chr15	91810797	91810797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgtaggtctgggataatGccctgtactgtgtgatgggg	17	5	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91810797	T	T	91810797	3	4	161	1	0	0	0	0	1	0	0	0	15536	1319	46	3	1158	3	SV2B	15	91810797	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	8476435	91810797	10720595	178	135136											
MSLNL	401827	broad.mit.edu	37	chr16	830999	830999	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaggtgacagctgtgtgcaCggggaggtgacagctgtgtg	19	6	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	830999	T	T	830999	1	4	161	0	1	0	0	0	0	0	0	0	9976	551	19	4		4	MSLNL	16	830999	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08		830999	89523754	179	135137											
LMF1	64788	broad.mit.edu	37	chr16	920074	920074	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccttggtgatgctgccggGagaccgaggcaggccaggcc	16	13	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	920074	A	A	920074	1	1	161	0	1	0	0	0	0	0	0	0	8919	1189	41	4		4	LMF1	16	920074	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	89075	920074	89434679	180	135138											
TMC7	79905	broad.mit.edu	37	chr16	19056263	19056263	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgttcacgctgggctccaaGatcacatcctgtgatgatga	11	10	2	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19056263	C	C	19056263	3	2	161	1	0	0	0	0	1	0	0	0	16113	933	33	4	1433	4	TMC7	16	19056263	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	18136189	19056263	71298490	181	135139											
TMC5	79838	broad.mit.edu	37	chr16	19474982	19474982	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaacatgcctagcatggTgcctgcacttaacaatactc	7	11	0	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19474982	C	C	19474982	1	2	161	0	1	0	0	0	0	0	0	0	16111	1711	59	5		5	TMC5	16	19474982	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	418719	19474982	70879771	182	135140											
CD2BP2	10421	broad.mit.edu	37	chr16	30364598	30364598	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccagaccatctccccgCgactctgcttctaaaataac	4	17	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30364598	T	T	30364598	2	4	161	1	0	0	0	0	0	0	0	1	3025	755	27	4		4	CD2BP2	16	30364598	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	10889616	30364598	59990155	183	135141											
FBRS	64319	broad.mit.edu	37	chr16	30676242	30676242	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccacggcccccacatgGtgagctcctcattgggctgg	11	17	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30676242	T	T	30676242	5	4	161	1	0	0	0	0	0	0	1	0	5764	1275	44	3	6	3	FBRS	16	30676242	Splice_Site	SNP	G	TCGA-50-5935-01A-11D-1753-08	311644	30676242	59678511	184	135142											
OGFOD1	55239	broad.mit.edu	37	chr16	56500026	56500026	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtgtcagctggtcactAtctgcagggatctaaggtgt	13	8	5	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56500026	G	G	56500026	1	3	161	0	1	0	0	0	0	0	0	0	10936	464	16	5		5	OGFOD1	16	56500026	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	25823784	56500026	33854727	185	135143											
CNOT1	23019	broad.mit.edu	37	chr16	58555102	58555102	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacttttcgatttctgggGcacagtgtacaaattcatgg	9	9	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58555102	A	A	58555102	3	1	161	1	0	0	0	0	1	0	0	0	3649	1203	42	4	101	4	CNOT1	16	58555102	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	2055076	58555102	31799651	186	135144											
SPG7	6687	broad.mit.edu	37	chr16	89614444	89614444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatctgcaatgaggctgCgctgcacgcggcgcgggagg	16	12	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89614444	A	A	89614444	3	1	161	1	0	0	0	0	1	0	0	0	15162	768	27	3	1782	3	SPG7	16	89614444	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	31059342	89614444	740309	187	135145											
TUBB3	10381	broad.mit.edu	37	chr16	89986023	89986023	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcagcagctggacaatgtCattgacgtgatcacctgcag	11	11	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89986023	T	T	89986023	2	4	161	1	0	0	0	0	0	0	0	1	16883	813	29	4		4	TUBB3	16	89986023	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	371579	89986023	368730	188	135146											
P2RX5	5026	broad.mit.edu	37	chr17	3593383	3593383	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggagaagttgaatttggGgaaacggatgtggttcttta	14	3	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3593383	C	C	3593383	3	2	161	1	0	0	0	0	1	0	0	0	11437	1232	43	4	701	4	P2RX5	17	3593383	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08		3593383	77601827	189	135147											
SLFN13	146857	broad.mit.edu	37	chr17	33770904	33770904	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgtcagatagactcaactGagactcaaaggcctcagcaa	8	11	4	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33770904	A	A	33770904	4	1	161	1	0	0	0	0	0	1	0	0	14850	1299	45	4	1603	4	SLFN13	17	33770904	Nonsense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	30177521	33770904	47424306	190	135148											
KRT27	342574	broad.mit.edu	37	chr17	38935859	38935859	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgccagcgtcgtcagagatCtgctgctgcagcgaggcgct	15	13	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38935859	T	T	38935859	2	4	161	1	0	0	0	0	0	0	0	1	8535	912	32	4		4	KRT27	17	38935859	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	5164955	38935859	42259351	191	135149											
KRT20	54474	broad.mit.edu	37	chr17	39036034	39036034	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accttggtaaacacatactaGattgagaaagagaagttaga	9	5	0	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39036034	A	A	39036034	1	1	161	0	1	0	0	0	0	0	0	0	8529	957	33	4		4	KRT20	17	39036034	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	100175	39036034	42159176	192	135150											
KRT36	8689	broad.mit.edu	37	chr17	39645783	39645783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctcccgctccagctgacGcaccttctccaggtagttgg	10	15	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39645783	T	T	39645783	3	4	161	1	0	0	0	0	1	0	0	0	8544	1087	38	3	1097	3	KRT36	17	39645783	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	609749	39645783	41549427	193	135151											
FZD2	2535	broad.mit.edu	37	chr17	42635739	42635739	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcgccctgcgaacctgCgcggcccgatggttccatgt	13	15	0	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42635739	T	T	42635739	3	4	161	1	0	0	0	0	1	0	0	0	6190	768	27	4	685	4	FZD2	17	42635739	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	2989956	42635739	38559471	194	135152											
ZNF652	22834	broad.mit.edu	37	chr17	47388720	47388720	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtactgcttcatgttgaaAtccttgccacaccactggca	7	12	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47388720	C	C	47388720	3	2	161	1	0	0	0	0	1	0	0	0	18192	98	4	5	565	5	ZNF652	17	47388720	Missense_Mutation	SNP	A	TCGA-50-5935-01A-11D-1753-08	4752981	47388720	33806490	195	135153											
MSI2	124540	broad.mit.edu	37	chr17	55334523	55334526	+	Intron	DEL	CTGG	-	-													agggagggagggggggacgcCtgggtcccccccttcttggc							TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55334526	-	-	55334523	6	5	161	0	1	1	0	1	0	0	0	0	9970	696	24	0		0	MSI2	17	55334523	Intron	DEL	CTGG	TCGA-50-5935-01A-11D-1753-08	7945803	55334523	25860687	196	135154											
MSI2	124540	broad.mit.edu	37	chr17	55729385	55729385	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagggcggggggttgtgtGgcccgtgacctaggtctgtg	21	7	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55729385	A	A	55729385	1	1	161	0	1	0	0	0	0	0	0	0	9970	1363	47	4		4	MSI2	17	55729385	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	394862	55729385	25465825	197	135155											
PRR11	55771	broad.mit.edu	37	chr17	57255798	57255798	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctccccctggcagtgcactGaagcaggaacacggttccgt	11	15	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57255798	A	A	57255798	1	1	161	0	1	0	0	0	0	0	0	0	12689	1305	45	4		4	PRR11	17	57255798	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	1526413	57255798	23939412	198	135156											
MED13	9969	broad.mit.edu	37	chr17	60024297	60024297	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgaggacatctgaagtctGatttgagtcaagtgggtggg	15	6	3	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60024297	A	A	60024297	4	1	161	1	0	0	0	0	0	1	0	0	9523	1299	45	4	159	4	MED13	17	60024297	Nonsense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	2768499	60024297	21170913	199	135157											
DNAI2	64446	broad.mit.edu	37	chr17	72285903	72285903	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagcggggtcctggtggccTgggagggctgagggctggga	23	8	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72285903	A	A	72285903	1	1	161	0	1	0	0	0	0	0	0	0	4650	1595	55	5		5	DNAI2	17	72285903	Intron	SNP	T	TCGA-50-5935-01A-11D-1753-08	12261606	72285903	8909307	200	135158											
OTOP3	347741	broad.mit.edu	37	chr17	72942967	72942967	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctgcacggggccatcttCgggccgctgctgggcctgct	14	16	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72942967	T	T	72942967	2	4	161	1	0	0	0	0	0	0	0	1	11401	883	31	4		4	OTOP3	17	72942967	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	657064	72942967	8252243	201	135159											
OTOP3	347741	broad.mit.edu	37	chr17	72943371	72943371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcatcgagggcctgcaccGgcgcccactctgggagacag	13	15	2	1	rs149666474	byFrequency	TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72943371	A	A	72943371	3	1	161	1	0	0	0	0	1	0	0	0	11401	1116	39	4	1443	4	OTOP3	17	72943371	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	404	72943371	8251839	202	135160											
HN1	51155	broad.mit.edu	37	chr17	73132392	73132392	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actcataatgacagccatttCctgttaagatcaaggatctg	7	9	3	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73132392	G	G	73132392	1	3	161	0	1	0	0	0	0	0	0	0	7316	870	30	4		4	HN1	17	73132392	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	189021	73132392	8062818	203	135161											
EVPL	2125	broad.mit.edu	37	chr17	74004735	74004735	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcacttccttgtagatggtCttctcctgcgatttggcttt	8	10	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74004735	G	G	74004735	3	3	161	1	0	0	0	0	1	0	0	0	5334	912	32	4	1554	4	EVPL	17	74004735	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	872343	74004735	7190475	204	135162											
C17orf70	80233	broad.mit.edu	37	chr17	79517327	79517327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacactgcagatgttcaggCtggctgggcacagcatgggg	16	10	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79517327	A	A	79517327	3	1	161	1	0	0	0	0	1	0	0	0	1893	797	28	3	1480	3	C17orf70	17	79517327	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	5512592	79517327	1677883	205	135163											
ROCK1	6093	broad.mit.edu	37	chr18	18531365	18531365	+	Intron	DEL	A	-	-													ttaactgttgagggagggggAaaaaactaatttaagaaatg					rs45521238		TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18531365	-	-	18531365	6	5	161	0	1	1	0	1	0	0	0	0	13628	261	9	0		0	ROCK1	18	18531365	Intron	DEL	A	TCGA-50-5935-01A-11D-1753-08		18531365	59545883	206	135164											
C18orf8	29919	broad.mit.edu	37	chr18	21086937	21086937	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatctttcttcttaaagaatGgatgacaaaggagaagtgaa	9	4	3	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21086937	A	A	21086937	3	1	161	1	0	0	0	0	1	0	0	0	1926	1348	47	4	193	4	C18orf8	18	21086937	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	2555572	21086937	56990311	207	135165											
SETBP1	26040	broad.mit.edu	37	chr18	42643129	42643129	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatgtgcaactacaccaaGatcctgtccaccaagaagaa	7	11	0	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42643129	C	C	42643129	3	2	161	1	0	0	0	0	1	0	0	0	14242	933	33	4	4468	4	SETBP1	18	42643129	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	21556192	42643129	35434119	208	135166											
TNFRSF11A	8792	broad.mit.edu	37	chr18	60036591	60036591	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggcatgggccttccccctGaagaagaagccagcaggacg	13	12	0	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60036591	A	A	60036591	3	1	161	1	0	0	0	0	1	0	0	0	16407	1291	45	4	1475	4	TNFRSF11A	18	60036591	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	17393462	60036591	18040657	209	135167											
CD226	10666	broad.mit.edu	37	chr18	67531647	67531647	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattggtaggttgactggtaGagatgggacttctatagtta	14	3	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67531647	C	C	67531647	3	2	161	1	0	0	0	0	1	0	0	0	3016	942	33	4	100	4	CD226	18	67531647	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	7495056	67531647	10545601	210	135168											
ZNF699	374879	broad.mit.edu	37	chr19	9407326	9407326	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggtacattccttacattCatagggcttctcttcagtgg	8	9	3	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9407326	T	T	9407326	3	4	161	1	0	0	0	0	1	0	0	0	18228	835	29	4	1178	4	ZNF699	19	9407326	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08		9407326	49721657	211	135169											
OR10H3	26532	broad.mit.edu	37	chr19	15852411	15852411	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgtgtgccctctccatctCtgagattctgttcactgttg	8	12	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15852411	G	G	15852411	3	3	161	1	0	0	0	0	1	0	0	0	11001	913	32	4	211	4	OR10H3	19	15852411	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	6445085	15852411	43276572	212	135170											
MYO9B	4650	broad.mit.edu	37	chr19	17264843	17264843	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcgccaagaatttcagctCaagcagcctgaagattattt	9	9	2	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17264843	G	G	17264843	2	3	161	1	0	0	0	0	0	0	0	1	10179	813	29	4		4	MYO9B	19	17264843	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	1412432	17264843	41864140	213	135171											
LSM4	25804	broad.mit.edu	37	chr19	18420683	18420683	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccccgtcctgcggagaagGggagcaggttattaacttac	13	10	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18420683	A	A	18420683	1	1	161	0	1	0	0	0	0	0	0	0	9145	1247	43	4		4	LSM4	19	18420683	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	1155840	18420683	40708300	214	135172											
GPATCH1	55094	broad.mit.edu	37	chr19	33588819	33588819	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccagaaaggtaattcgacAgccacaaacctaatggcagg	9	10	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33588819	C	C	33588819	1	2	161	0	1	0	0	0	0	0	0	0	6655	203	7	5		5	GPATCH1	19	33588819	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	15168136	33588819	25540164	215	135173											
RYR1	6261	broad.mit.edu	37	chr19	39018359	39018359	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgggtcgcgaggaggacgccGatgaccccgagaaaatcgtg	16	11	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39018359	A	A	39018359	3	1	161	1	0	0	0	0	1	0	0	0	13879	1058	37	4	11049	4	RYR1	19	39018359	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	5429540	39018359	20110624	216	135174											
EIF3K	27335	broad.mit.edu	37	chr19	39123104	39123104	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacatggacctcttggaagGtataactggctttgaagact	10	7	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39123104	C	C	39123104	3	2	161	1	0	0	0	0	1	0	0	0	5063	1261	44	4	407	4	EIF3K	19	39123104	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	104745	39123104	20005879	217	135175											
ZC3H4	23211	broad.mit.edu	37	chr19	47597768	47597768	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcactgtgatgcttctcccCcttttctttccggcttctct	5	15	4	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47597768	T	T	47597768	3	4	161	1	0	0	0	0	1	0	0	0	17696	623	22	4	3704	4	ZC3H4	19	47597768	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	8474664	47597768	11531215	218	135176											
SHANK1	50944	broad.mit.edu	37	chr19	51200826	51200826	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggggtgaggggggttgcccGagggtgtaaggacatttacc	19	6	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51200826	A	A	51200826	1	1	161	0	1	0	0	0	0	0	0	0	14377	1073	37	4		4	SHANK1	19	51200826	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	3603058	51200826	7928157	219	135177											
KLK1	3816	broad.mit.edu	37	chr19	51323577	51323577	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcctcgtctgcttggcggGtgtggttctccaggaggctc	15	11	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51323577	A	A	51323577	3	1	161	1	0	0	0	0	1	0	0	0	8468	1261	44	4	471	4	KLK1	19	51323577	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	122751	51323577	7805406	220	135178											
ZNF582	147948	broad.mit.edu	37	chr19	56895542	56895542	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttttcacctgtatgaattCtgtaatgtacagtaagatgt	8	6	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56895542	G	G	56895542	3	3	161	1	0	0	0	0	1	0	0	0	18141	913	32	4	313	4	ZNF582	19	56895542	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	5571965	56895542	2233441	221	135179											
CSNK2A1	1457	broad.mit.edu	37	chr20	467014	467014	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaagaaaatttaccaatgaActgacctgacatcatattgg	6	7	1	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	467014	T	T	467014	1	4	161	0	1	0	0	0	0	0	0	0	3991	58	2	5		5	CSNK2A1	20	467014	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08		467014	62558506	222	135180											
PAX1	5075	broad.mit.edu	37	chr20	21689309	21689309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgggctagagaaacctGccttagaggcagacattaaa	11	7	0	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21689309	T	T	21689309	3	4	161	1	0	0	0	0	1	0	0	0	11572	1319	46	3	1040	3	PAX1	20	21689309	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	21222295	21689309	41336211	223	135181											
CST5	1473	broad.mit.edu	37	chr20	23858166	23858166	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcagttttggctggtcattGaagggacagttgtccaagtt	12	6	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23858166	T	T	23858166	3	4	161	1	0	0	0	0	1	0	0	0	4009	1281	45	3	115	3	CST5	20	23858166	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	2168857	23858166	39167354	224	135182											
VAPB	9217	broad.mit.edu	37	chr20	57019258	57019258	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggtggttttgttctttatCgttggtgtaattattgggaa	12	3	1	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57019258	A	A	57019258	2	1	161	1	0	0	0	0	0	0	0	1	17249	874	31	3		3	VAPB	20	57019258	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	33161092	57019258	6006262	225	135183											
ZGPAT	84619	broad.mit.edu	37	chr20	62365055	62365055	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggccacagagtccgactcaGacagcgacggtacgggtgac	14	12	1	3			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62365055	C	C	62365055	3	2	161	1	0	0	0	0	1	0	0	0	17800	942	33	4	845	4	ZGPAT	20	62365055	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	5345797	62365055	660465	226	135184											
PCMTD2	55251	broad.mit.edu	37	chr20	62891579	62891579	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactctcgtttctgaacctGggcagtggcactgggtatct	13	10	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62891579	A	A	62891579	2	1	161	1	0	0	0	0	0	0	0	1	11681	1335	47	4		4	PCMTD2	20	62891579	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	526524	62891579	133941	227	135185											
CYYR1	116159	broad.mit.edu	37	chr21	27945234	27945234	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggaagcaagacccctggaCgcacgggtagcctcggagcg	15	13	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27945234	T	T	27945234	3	4	161	1	0	0	0	0	1	0	0	0	4244	536	19	4	454	4	CYYR1	21	27945234	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08		27945234	20184661	228	135186											
KRTAP10-12	386685	broad.mit.edu	37	chr21	46117437	46117437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggcctgctgcgtgccCgtctgctgcaagactgtctg	13	14	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46117437	A	A	46117437	2	1	161	1	0	0	0	0	0	0	0	1	8579	639	23	1		1	KRTAP10-12	21	46117437	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	18172203	46117437	2012458	229	135187											
PRMT2	3275	broad.mit.edu	37	chr21	48063423	48063423	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagctccagcgtcctctcctCacgctttccttggctttgag	8	15	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48063423	T	T	48063423	1	4	161	0	1	0	0	0	0	0	0	0	12643	841	29	4		4	PRMT2	21	48063423	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	1945986	48063423	66472	230	135188											
CHEK2	11200	broad.mit.edu	37	chr22	29130366	29130366	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttttctgaacaaaacgtGatactatacaacaaagggtc	7	7	1	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29130366	C	C	29130366	1	2	161	0	1	0	0	0	0	0	0	0	3366	1305	45	4		4	CHEK2	22	29130366	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08		29130366	22174200	231	135189											
LARGE	9215	broad.mit.edu	37	chr22	33673269	33673269	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacggagaaaagccattggGtgtagggaaggaagccaagc	15	7	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33673269	C	C	33673269	1	2	161	0	1	0	0	0	0	0	0	0	8699	1276	44	4		4	LARGE	22	33673269	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	4542903	33673269	17631297	232	135190											
CARD10	29775	broad.mit.edu	37	chr22	37902158	37902177	+	Intron	DEL	CAGCCTTCCTGCCAGGACCT	-	-													aagagctcctgccaggacccCagccttcctgccaggacctc					rs738304	by1000genomes	TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37902177	-	-	37902158	6	5	161	0	1	1	0	1	0	0	0	0	2670	609	21	0		0	CARD10	22	37902158	Intron	DEL	CAGCCTTCCTGCCAGGACCT	TCGA-50-5935-01A-11D-1753-08	4228889	37902158	13402408	233	135191											
TRMU	55687	broad.mit.edu	37	chr22	46742503	46742503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgaaatctttggaggaAtgacagtgggttgtgcctga	14	4	1	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46742503	G	G	46742503	1	3	161	0	1	0	0	0	0	0	0	0	16696	116	4	5		5	TRMU	22	46742503	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	8840345	46742503	4562063	234	135192											
TLR7	51284	broad.mit.edu	37	chrX	12905921	12905921	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccagatgatccaaaagaCcagcttcccagaaaatgtcc	6	12	0	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12905921	T	T	12905921	3	4	161	1	0	0	0	0	1	0	0	0	16079	507	18	4	2300	4	TLR7	23	12905921	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08		12905921	142364639	235	135193											
RS1	6247	broad.mit.edu	37	chrX	18660249	18660249	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcaggttctgaaccgtggAggtgcggtccgagttgccat	15	10	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18660249	T	T	18660249	3	4	161	1	0	0	0	0	1	0	0	0	13804	304	11	5	128	5	RS1	23	18660249	Missense_Mutation	SNP	A	TCGA-50-5935-01A-11D-1753-08	5754328	18660249	136610311	236	135194											
CNKSR2	22866	broad.mit.edu	37	chrX	21666912	21666913	+	Intron	INS	-	T	T													tctctctctctctctctttcINStttttttttttttttttttt					rs5901679		TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21666913	T	T	21666912	6	5	161	0	1	1	1	0	0	0	0	0	3639	928	32	0		0	CNKSR2	23	21666912	Intron	INS	-	TCGA-50-5935-01A-11D-1753-08	3006663	21666912	133603648	237	135195											
PCYT1B	9468	broad.mit.edu	37	chrX	24580213	24580213	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtccagctagaagtctcTgcacctcgcccaactcttca	7	15	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24580213	C	C	24580213	1	2	161	0	1	0	0	0	0	0	0	0	11705	1588	55	5		5	PCYT1B	23	24580213	3'UTR	SNP	T	TCGA-50-5935-01A-11D-1753-08	2913301	24580213	130690347	238	135196											
FAM47A	158724	broad.mit.edu	37	chrX	34149208	34149208	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactgggtggagatgagaCacttcagtcttgggaggctc	16	8	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34149208	A	A	34149208	2	1	161	1	0	0	0	0	0	0	0	1	5620	465	17	3		3	FAM47A	23	34149208	Silent	SNP	C	TCGA-50-5935-01A-11D-1753-08	9568995	34149208	121121352	239	135197											
USP9X	8239	broad.mit.edu	37	chrX	41007726	41007726	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgatggcacacaaagtgttGaaccttctgtggaatctggc	12	8	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41007726	A	A	41007726	2	1	161	1	0	0	0	0	0	0	0	1	17217	1281	45	4		4	USP9X	23	41007726	Silent	SNP	G	TCGA-50-5935-01A-11D-1753-08	6858518	41007726	114262834	240	135198											
ARAF	369	broad.mit.edu	37	chrX	47430737	47430737	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcagatcctggccacaattGagctgctgcaacggtcactc	9	14	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47430737	C	C	47430737	3	2	161	1	0	0	0	0	1	0	0	0	839	1291	45	4	1760	4	ARAF	23	47430737	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	6423011	47430737	107839823	241	135199											
HUWE1	10075	broad.mit.edu	37	chrX	53610529	53610529	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacactcaccttttccatggTatgacgaagggtacaggggt	11	10	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53610529	C	C	53610529	3	2	161	1	0	0	0	0	1	0	0	0	7531	1638	57	5	7787	5	HUWE1	23	53610529	Missense_Mutation	SNP	T	TCGA-50-5935-01A-11D-1753-08	6179792	53610529	101660031	242	135200											
HUWE1	10075	broad.mit.edu	37	chrX	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-													gggccagggccggggccgggGccggggccggggccggggcc					rs78801842	by1000genomes	TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652829	6	5	161	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652829	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	TCGA-50-5935-01A-11D-1753-08	42300	53652829	101617731	243	135201											
ITIH5L	347365	broad.mit.edu	37	chrX	54823428	54823428	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatccaggtcaaagatggcTtcatgggcttcagcatgtgg	13	8	3	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54823428	G	G	54823428	3	3	161	1	0	0	0	0	1	0	0	0	7978	1606	56	5	3785	5	ITIH5L	23	54823428	Missense_Mutation	SNP	T	TCGA-50-5935-01A-11D-1753-08	1170599	54823428	100447132	244	135202											
ACSL4	2182	broad.mit.edu	37	chrX	108921347	108921347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtccttcggtctaaaaCaaaataagagaaatatttta	6	5	1	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108921347	A	A	108921347	1	1	161	0	1	0	0	0	0	0	0	0	179	493	17	3		3	ACSL4	23	108921347	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	54097919	108921347	46349213	245	135203											
DOCK11	139818	broad.mit.edu	37	chrX	117748867	117748867	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttggactatagacatacgtAaaagcaaggaatactggact	10	6	0	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117748867	G	G	117748867	1	3	161	0	1	0	0	0	0	0	0	0	4726	377	13	5		5	DOCK11	23	117748867	Intron	SNP	A	TCGA-50-5935-01A-11D-1753-08	8827520	117748867	37521693	246	135204											
CXorf56	63932	broad.mit.edu	37	chrX	118678319	118678319	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttcaatggtaattaccttCttaggaggctcttgtttctg	8	9	4	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118678319	G	G	118678319	3	3	161	1	0	0	0	0	1	0	0	0	4145	912	32	4	264	4	CXorf56	23	118678319	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	929452	118678319	36592241	247	135205											
SAGE1	55511	broad.mit.edu	37	chrX	134987660	134987660	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactttcctagtctcaatttGaggggtctcagatggccacc	9	11	2	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134987660	C	C	134987660	1	2	161	0	1	0	0	0	0	0	0	0	13920	1305	45	4		4	SAGE1	23	134987660	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	16309341	134987660	20282900	248	135206											
HTATSF1	27336	broad.mit.edu	37	chrX	135586542	135586542	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcagttggattggagacctGagaggcgagccggaccatcc	16	10	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135586542	A	A	135586542	3	1	161	1	0	0	0	0	1	0	0	0	7503	1291	45	4	776	4	HTATSF1	23	135586542	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	598882	135586542	19684018	249	135207											
FGF13	2258	broad.mit.edu	37	chrX	137793208	137793208	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttcttttgctgcccctctCtgggttcgcctcctcctcct	7	18	2	0			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137793208	G	G	137793208	1	3	161	0	1	0	0	0	0	0	0	0	5899	928	32	4		4	FGF13	23	137793208	5'UTR	SNP	C	TCGA-50-5935-01A-11D-1753-08	2206666	137793208	17477352	250	135208											
SLITRK4	139065	broad.mit.edu	37	chrX	142716664	142716664	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaataaacacattggaaTccctgctagggaataattca	7	8	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142716664	C	C	142716664	3	2	161	1	0	0	0	0	1	0	0	0	14859	1435	50	5	256	5	SLITRK4	23	142716664	Missense_Mutation	SNP	T	TCGA-50-5935-01A-11D-1753-08	4923456	142716664	12553896	251	135209											
MAGEA11	4110	broad.mit.edu	37	chrX	148794784	148794784	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagtcccgccgtctcaaactGaggtgccttttcattcagcc	8	14	3	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148794784	C	C	148794784	1	2	161	0	1	0	0	0	0	0	0	0	9253	1305	45	4		4	MAGEA11	23	148794784	Intron	SNP	G	TCGA-50-5935-01A-11D-1753-08	6078120	148794784	6475776	252	135210											
MAGEA8	4107	broad.mit.edu	37	chrX	149013830	149013830	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagaactacctggagtacCgccaggcgcccggcagtgat	14	12	0	2			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149013830	T	T	149013830	3	4	161	1	0	0	0	0	1	0	0	0	9261	652	23	4	786	4	MAGEA8	23	149013830	Missense_Mutation	SNP	C	TCGA-50-5935-01A-11D-1753-08	219046	149013830	6256730	253	135211											
ARHGAP4	393	broad.mit.edu	37	chrX	153186252	153186252	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtgatatgcctggtacGtcttcttggcctgcagggag	13	10	2	1			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153186252	A	A	153186252	3	1	161	1	0	0	0	0	1	0	0	0	887	1145	40	4	2527	4	ARHGAP4	23	153186252	Missense_Mutation	SNP	G	TCGA-50-5935-01A-11D-1753-08	4172422	153186252	2084308	254	135212											
CLIC2	1193	broad.mit.edu	37	chrX	154520397	154520397	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgacggacatgagaatgatCtggaaaccatgcaatgaata	10	6	1	4			TCGA-50-5935-01A-11D-1753-08	TCGA-50-5935-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154520397	T	T	154520397	1	4	161	0	1	0	0	0	0	0	0	0	3558	928	32	4		4	CLIC2	23	154520397	Intron	SNP	C	TCGA-50-5935-01A-11D-1753-08	1334145	154520397	750163	255	135213											
MORN1	79906	broad.mit.edu	37	chr1	2318994	2318994	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtggacaaggaggaggggaGacaggaggttcagttcaggg	20	4	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2318994	C	C	2318994	1	2	162	0	1	0	0	0	0	0	0	0	9802	957	33	4		4	MORN1	1	2318994	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08		2318994	246931627	1	135214											
PPT1	5538	broad.mit.edu	37	chr1	40562949	40562949	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgcgggcgcgagactccggGaaccgcgctccgcccgcctg	15	19	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40562949	A	A	40562949	1	1	162	0	1	0	0	0	0	0	0	0	12512	1189	41	4		4	PPT1	1	40562949	5'UTR	SNP	G	TCGA-50-5936-01A-11D-1625-08	38243955	40562949	208687672	2	135215											
DMBX1	127343	broad.mit.edu	37	chr1	46976626	46976626	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggttcaagaaccgccGggccaagttccggaagaagc	15	10	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46976626	A	A	46976626	3	1	162	1	0	0	0	0	1	0	0	0	4618	1116	39	4	378	4	DMBX1	1	46976626	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	6413677	46976626	202273995	3	135216											
ACADM	34	broad.mit.edu	37	chr1	76198356	76198356	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaacagcagaaagaatttcAagctactgctcgtaaatttg	8	8	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76198356	C	C	76198356	3	2	162	1	0	0	0	0	1	0	0	0	113	130	5	5	168	5	ACADM	1	76198356	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	29221730	76198356	173052265	4	135217											
HFM1	164045	broad.mit.edu	37	chr1	91781919	91781919	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggcctcagaatttagaTggaattaggaataagtgaat	12	3	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91781919	G	G	91781919	1	3	162	0	1	0	0	0	0	0	0	0	7150	1479	51	5		5	HFM1	1	91781919	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	15583563	91781919	157468702	5	135218											
LPPR4	9890	broad.mit.edu	37	chr1	99764596	99764596	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattttgcctataggtgttCatgtatttggattatgctct	8	6	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99764596	T	T	99764596	3	4	162	1	0	0	0	0	1	0	0	0	9014	826	29	4	558	4	LPPR4	1	99764596	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	7982677	99764596	149486025	6	135219											
HSD3B1	3283	broad.mit.edu	37	chr1	120057020	120057020	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttcctttatccctgatgTattggattggcttcctgctg	9	10	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120057020	C	C	120057020	3	2	162	1	0	0	0	0	1	0	0	0	7457	1638	57	5	884	5	HSD3B1	1	120057020	Missense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	20292424	120057020	129193601	7	135220											
ITGA10	8515	broad.mit.edu	37	chr1	145535838	145535838	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggccaagaggcagtctgtCtgactgcagccctttgcttc	12	12	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145535838	T	T	145535838	2	4	162	1	0	0	0	0	0	0	0	1	7943	912	32	4		4	ITGA10	1	145535838	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	25478818	145535838	103714783	8	135221											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858560	149858560	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaggaggcaaggcccgCgccaaggccaagtcgcgctc	13	14	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149858560	T	T	149858560	2	4	162	1	0	0	0	0	0	0	0	1	7245	755	27	4		4	HIST2H2AC	1	149858560	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	4322722	149858560	99392061	9	135222											
DENND4B	9909	broad.mit.edu	37	chr1	153907270	153907270	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctcttgatgtgctgaCacctgctcctgctgctgctg	10	15	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153907270	T	T	153907270	2	4	162	1	0	0	0	0	0	0	0	1	4474	465	17	4		4	DENND4B	1	153907270	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	4048710	153907270	95343351	10	135223											
C1orf129	80133	broad.mit.edu	37	chr1	170961578	170961578	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttaacacagtcctcttctCatgcatccattcatgcaaca	3	14	4	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170961578	T	T	170961578	1	4	162	0	1	0	0	0	0	0	0	0	2016	841	29	4		4	C1orf129	1	170961578	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	17054308	170961578	78289043	11	135224											
CEP350	9857	broad.mit.edu	37	chr1	179938070	179938070	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgctgccactggagccActccaattgctgactgcttt	9	13	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179938070	T	T	179938070	1	4	162	0	1	0	0	0	0	0	0	0	3284	174	6	5		5	CEP350	1	179938070	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	8976492	179938070	69312551	12	135225											
F13B	2165	broad.mit.edu	37	chr1	197019966	197019966	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgttgaactaataatgacTccatgtttaataagaggagg	9	5	0	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197019966	A	A	197019966	2	1	162	1	0	0	0	0	0	0	0	1	5384	1538	54	5		5	F13B	1	197019966	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08	17081896	197019966	52230655	13	135226											
NR5A2	2494	broad.mit.edu	37	chr1	200014594	200014594	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaagcgaacagtccaAaataataaaaggtacacatg	6	6	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200014594	T	T	200014594	3	4	162	1	0	0	0	0	1	0	0	0	10731	11	1	5	359	5	NR5A2	1	200014594	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	2994628	200014594	49236027	14	135227											
NAV1	89796	broad.mit.edu	37	chr1	201749556	201749556	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctgtcctgtagctgggatGaaagcagctccatcagtagt	11	10	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201749556	A	A	201749556	3	1	162	1	0	0	0	0	1	0	0	0	10277	1291	45	4	1305	4	NAV1	1	201749556	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	1734962	201749556	47501065	15	135228											
NAV1	89796	broad.mit.edu	37	chr1	201776954	201776954	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatcaagtgaagtgttataGagggtggcttaattaaagta	12	2	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201776954	C	C	201776954	1	2	162	0	1	0	0	0	0	0	0	0	10277	957	33	4		4	NAV1	1	201776954	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	27398	201776954	47473667	16	135229											
NAV1	89796	broad.mit.edu	37	chr1	201777216	201777216	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactacagcatggttctacaGagactgcttcaccctccatc	6	14	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201777216	A	A	201777216	3	1	162	1	0	0	0	0	1	0	0	0	10277	943	33	4	3911	4	NAV1	1	201777216	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	262	201777216	47473405	17	135230											
NFASC	23114	broad.mit.edu	37	chr1	204923896	204923896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcctgcctctgaccctGctccttgccccgggcccagc	10	20	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204923896	T	T	204923896	1	4	162	0	1	0	0	0	0	0	0	0	10454	1334	46	3		3	NFASC	1	204923896	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	3146680	204923896	44326725	18	135231											
PIGR	5284	broad.mit.edu	37	chr1	207105952	207105952	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcttaagttagttcatcccTggaagggagatctgggggcc	15	8	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207105952	A	A	207105952	1	1	162	0	1	0	0	0	0	0	0	0	11992	1595	55	5		5	PIGR	1	207105952	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	2182056	207105952	42144669	19	135232											
USH2A	7399	broad.mit.edu	37	chr1	216405452	216405452	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagcatggcaggcagccagTggcattgcctggagaaatat	14	8	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216405452	C	C	216405452	3	2	162	1	0	0	0	0	1	0	0	0	17162	1696	59	5	13022	5	USH2A	1	216405452	Missense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	9299500	216405452	32845169	20	135233											
EPRS	2058	broad.mit.edu	37	chr1	220160560	220160560	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccttggtttttagaagggtCtttcctttggccatcatttt	8	8	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220160560	A	A	220160560	3	1	162	1	0	0	0	0	1	0	0	0	5233	913	32	3	1628	3	EPRS	1	220160560	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	3755108	220160560	29090061	21	135234											
URB2	9816	broad.mit.edu	37	chr1	229771675	229771675	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcagcgtggatcgatgccGaggtaacagagtttcgaacc	12	10	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229771675	A	A	229771675	3	1	162	1	0	0	0	0	1	0	0	0	17151	1059	37	4	1325	4	URB2	1	229771675	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	9611115	229771675	19478946	22	135235											
GALNT2	2590	broad.mit.edu	37	chr1	230415081	230415081	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcgagggcaactccaagctGaggcacgtgggcagcaacct	13	12	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230415081	C	C	230415081	2	2	162	1	0	0	0	0	0	0	0	1	6275	1277	45	4		4	GALNT2	1	230415081	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	643406	230415081	18835540	23	135236											
ZP4	57829	broad.mit.edu	37	chr1	238048576	238048576	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaaggctttctggacaggGatcagctgggtctgatagtt	13	8	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048576	T	T	238048576	2	4	162	1	0	0	0	0	0	0	0	1	18347	1164	41	3		3	ZP4	1	238048576	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	7633495	238048576	11202045	24	135237											
NLRP3	114548	broad.mit.edu	37	chr1	247587274	247587274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcgtctcatcaaggagCaccggagccagcaggagagg	15	11	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247587274	A	A	247587274	3	1	162	1	0	0	0	0	1	0	0	0	10573	710	25	3	539	3	NLRP3	1	247587274	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	9538698	247587274	1663347	25	135238											
OR2L13	284521	broad.mit.edu	37	chr1	248263401	248263401	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccttcaccaccatttcaAcacatttaactgtagtgatc	5	12	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248263401	G	G	248263401	3	3	162	1	0	0	0	0	1	0	0	0	11100	43	2	5	726	5	OR2L13	1	248263401	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	676127	248263401	987220	26	135239											
APOB	338	broad.mit.edu	37	chr2	21234442	21234442	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgttgtcaagttttgaagaGaagtccagtgataagcctgc	11	6	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21234442	C	C	21234442	3	2	162	1	0	0	0	0	1	0	0	0	787	933	33	4	8409	4	APOB	2	21234442	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08		21234442	221964931	27	135240											
DHX57	90957	broad.mit.edu	37	chr2	39089319	39089319	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgcaaatggggagacTgtaaattctggaacataagg	12	6	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39089319	A	A	39089319	2	1	162	1	0	0	0	0	0	0	0	1	4553	1567	55	5		5	DHX57	2	39089319	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08	17854877	39089319	204110054	28	135241											
ABCG5	64240	broad.mit.edu	37	chr2	44051074	44051074	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattcacagcgttcagcatGcctgtgtacggggtggcgcc	14	11	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44051074	T	T	44051074	2	4	162	1	0	0	0	0	0	0	0	1	71	1306	46	3		3	ABCG5	2	44051074	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	4961755	44051074	199148299	29	135242											
PSME4	23198	broad.mit.edu	37	chr2	54124089	54124089	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaactggttgtctgctttActcaaagcagaaataggatt	8	7	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54124089	C	C	54124089	1	2	162	0	1	0	0	0	0	0	0	0	12815	406	14	5		5	PSME4	2	54124089	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	10073015	54124089	189075284	30	135243											
DYSF	8291	broad.mit.edu	37	chr2	71795381	71795381	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagttttctgacgtcaCgggcaagatcaagctaccca	8	14	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71795381	T	T	71795381	3	4	162	1	0	0	0	0	1	0	0	0	4899	536	19	4	3017	4	DYSF	2	71795381	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	17671292	71795381	171403992	31	135244											
SFTPB	6439	broad.mit.edu	37	chr2	85893940	85893941	+	Intron	INS	-	A	A													gtccctggacacaaggccccINSaccagggcagactgacccct							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85893941	A	A	85893940	6	5	162	0	1	1	1	0	0	0	0	0	14304	609	21	0		0	SFTPB	2	85893940	Intron	INS	-	TCGA-50-5936-01A-11D-1625-08	14098559	85893940	157305433	32	135245											
C2orf29	55571	broad.mit.edu	37	chr2	101874279	101874279	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacctcctataactccaccaGaaaagttttttctttcccag	3	13	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101874279	A	A	101874279	3	1	162	1	0	0	0	0	1	0	0	0	2183	943	33	4	547	4	C2orf29	2	101874279	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	15980339	101874279	141325094	33	135246											
C2orf29	55571	broad.mit.edu	37	chr2	101874347	101874347	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcaaaaagacgcctcgccaGattgcactgatggacgttgg	11	10	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101874347	C	C	101874347	3	2	162	1	0	0	0	0	1	0	0	0	2183	933	33	4	615	4	C2orf29	2	101874347	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	68	101874347	141325026	34	135247											
LRP1B	53353	broad.mit.edu	37	chr2	141528420	141528420	+	Intron	DEL	C	-	-													tgattagtgaagtaaatgaaCcagaggtaaggtttttcatg							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141528420	-	-	141528420	6	5	162	0	1	1	0	1	0	0	0	0	9042	522	18	0		0	LRP1B	2	141528420	Intron	DEL	C	TCGA-50-5936-01A-11D-1625-08	39654073	141528420	101670953	35	135248											
KYNU	8942	broad.mit.edu	37	chr2	143685382	143685382	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagttataaacacaggctCataaagtcaaaatcttattg	5	6	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143685382	A	A	143685382	1	1	162	0	1	0	0	0	0	0	0	0	8659	841	29	3		3	KYNU	2	143685382	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	2156962	143685382	99513991	36	135249											
TANC1	85461	broad.mit.edu	37	chr2	160086373	160086373	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaactcccaggtcccagcCatcctcatctgtcccttcct	4	21	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160086373	G	G	160086373	3	3	162	1	0	0	0	0	1	0	0	0	15663	594	21	4	4539	4	TANC1	2	160086373	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	16400991	160086373	83113000	37	135250											
LY75	4065	broad.mit.edu	37	chr2	160676435	160676435	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacataagagacttatctaGagaagaaacattttttccta	5	8	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160676435	C	C	160676435	1	2	162	0	1	0	0	0	0	0	0	0	9187	957	33	4		4	LY75	2	160676435	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	590062	160676435	82522938	38	135251											
DPP4	1803	broad.mit.edu	37	chr2	162851636	162851636	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcacaagaagaaagggactGtttgaagttctaggactcag	13	6	2	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162851636	C	C	162851636	1	2	162	0	1	0	0	0	0	0	0	0	4769	1392	48	4		4	DPP4	2	162851636	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	2175201	162851636	80347737	39	135252											
XIRP2	129446	broad.mit.edu	37	chr2	168104901	168104901	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctcactgtccacagagaaGataaaggctgaatttgaaag	9	9	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168104901	A	A	168104901	2	1	162	1	0	0	0	0	0	0	0	1	17557	933	33	4		4	XIRP2	2	168104901	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	5253265	168104901	75094472	40	135253											
WIPF1	7456	broad.mit.edu	37	chr2	175436481	175436481	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggacctgaacgtcctGgcgaaggtaacgggggcgtg	18	8	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175436481	A	A	175436481	3	1	162	1	0	0	0	0	1	0	0	0	17494	1348	47	4	475	4	WIPF1	2	175436481	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	7331580	175436481	67762892	41	135254											
PPP1R1C	151242	broad.mit.edu	37	chr2	182852547	182852547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactcactgatattagctGggcttttgtcgttcacagat	8	8	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182852547	T	T	182852547	1	4	162	0	1	0	0	0	0	0	0	0	12470	1363	47	2		2	PPP1R1C	2	182852547	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	7416066	182852547	60346826	42	135255											
MYO1B	4430	broad.mit.edu	37	chr2	192250498	192250498	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctgctttttgttataactGaacagacttttcttgtgact	6	8	2	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192250498	A	A	192250498	1	1	162	0	1	0	0	0	0	0	0	0	10163	1305	45	4		4	MYO1B	2	192250498	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	9397951	192250498	50948875	43	135256											
SF3B1	23451	broad.mit.edu	37	chr2	198274563	198274563	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgcgcctccatggcctgGtgtcgcatggcctggtgtat	14	11	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198274563	A	A	198274563	3	1	162	1	0	0	0	0	1	0	0	0	14262	1261	44	4	3155	4	SF3B1	2	198274563	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	6024065	198274563	44924810	44	135257											
SATB2	23314	broad.mit.edu	37	chr2	200173449	200173449	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgctggcacacagagccctGatcaggtggggtacggcggt	16	11	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200173449	C	C	200173449	1	2	162	0	1	0	0	0	0	0	0	0	13966	1305	45	4		4	SATB2	2	200173449	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	1898886	200173449	43025924	45	135258											
CXCR1	3577	broad.mit.edu	37	chr2	219029334	219029334	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggcaggatccgcaacaCcatccgccattttgctgtgt	11	12	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219029334	G	G	219029334	3	3	162	1	0	0	0	0	1	0	0	0	4123	507	18	4	455	4	CXCR1	2	219029334	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	18855885	219029334	24170039	46	135259											
SP140	11262	broad.mit.edu	37	chr2	231106062	231106062	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagttcatcttgagcacactGaggtctctcctctggtcact	8	12	5	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231106062	A	A	231106062	1	1	162	0	1	0	0	0	0	0	0	0	15076	1305	45	4		4	SP140	2	231106062	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	12076728	231106062	12093311	47	135260											
COPS7B	64708	broad.mit.edu	37	chr2	232656576	232656576	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatgttgctcagtttggaaGaccatcaaggtttgagatat	10	5	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232656576	C	C	232656576	1	2	162	0	1	0	0	0	0	0	0	0	3771	957	33	4		4	COPS7B	2	232656576	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	1550514	232656576	10542797	48	135261											
NDUFA10	4705	broad.mit.edu	37	chr2	240921677	240921677	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attctgttcacctcgcctctGacaaaggccgactttacttt	6	13	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240921677	A	A	240921677	1	1	162	0	1	0	0	0	0	0	0	0	10355	1305	45	4		4	NDUFA10	2	240921677	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	8265101	240921677	2277696	49	135262											
AGXT	189	broad.mit.edu	37	chr2	241812310	241812310	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccttgccagcctgaggctCagaaaccccatccagcctgg	9	16	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241812310	A	A	241812310	1	1	162	0	1	0	0	0	0	0	0	0	404	841	29	3		3	AGXT	2	241812310	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	890633	241812310	1387063	50	135263											
EFHB	151651	broad.mit.edu	37	chr3	19961408	19961408	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttccgtaaaatactctttCtactccagcaggtggatatc	6	11	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19961408	T	T	19961408	3	4	162	1	0	0	0	0	1	0	0	0	4985	922	32	4	1632	4	EFHB	3	19961408	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08		19961408	178061022	51	135264											
KAT2B	8850	broad.mit.edu	37	chr3	20141466	20141466	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaaaagattttaaaagcCctctttttattggctcaagg	8	6	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20141466	T	T	20141466	1	4	162	0	1	0	0	0	0	0	0	0	8052	638	22	4		4	KAT2B	3	20141466	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	180058	20141466	177880964	52	135265											
NGLY1	55768	broad.mit.edu	37	chr3	25781184	25781184	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatctctagacctagtctgTccaccacatttgctgcacaa	5	14	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25781184	A	A	25781184	2	1	162	1	0	0	0	0	0	0	0	1	10493	1654	58	5		5	NGLY1	3	25781184	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08	5639718	25781184	172241246	53	135266											
CELSR3	1951	broad.mit.edu	37	chr3	48688273	48688273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgccactgacacgtgatggTggcacactggaaccagccct	12	13	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48688273	A	A	48688273	1	1	162	0	1	0	0	0	0	0	0	0	3253	1711	59	5		5	CELSR3	3	48688273	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	22907089	48688273	149334157	54	135267											
NCKIPSD	51517	broad.mit.edu	37	chr3	48719904	48719904	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatccaagtggtggtcactGgttgatgaggtcataactgc	13	8	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48719904	A	A	48719904	2	1	162	1	0	0	0	0	0	0	0	1	10320	1335	47	4		4	NCKIPSD	3	48719904	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	31631	48719904	149302526	55	135268											
ROBO1	6091	broad.mit.edu	37	chr3	78710334	78710334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacttcaaaaactaaccaGtctgattctccgtggttggc	7	12	4	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78710334	T	T	78710334	3	4	162	1	0	0	0	0	1	0	0	0	13624	1020	36	3	2853	3	ROBO1	3	78710334	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	29990430	78710334	119312096	56	135269											
EPHA3	2042	broad.mit.edu	37	chr3	89157103	89157103	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgaatagagcagtttgctCtgagagtgaaggaaagatgt	13	5	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89157103	A	A	89157103	1	1	162	0	1	0	0	0	0	0	0	0	5210	928	32	3		3	EPHA3	3	89157103	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	10446769	89157103	108865327	57	135270											
OR5H15	403274	broad.mit.edu	37	chr3	97888478	97888478	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaagaaatgttaaggtttCatactaatatcctttttcta	4	5	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97888478	T	T	97888478	3	4	162	1	0	0	0	0	1	0	0	0	11255	838	29	4	937	4	OR5H15	3	97888478	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	8731375	97888478	100133952	58	135271											
C3orf26	84319	broad.mit.edu	37	chr3	99895199	99895199	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttgagccccttaaaattTctggtttttgactggaactg	8	7	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99895199	G	G	99895199	3	3	162	1	0	0	0	0	1	0	0	0	2240	1780	62	5	744	5	C3orf26	3	99895199	Missense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	2006721	99895199	98127231	59	135272											
PHLDB2	90102	broad.mit.edu	37	chr3	111638039	111638039	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatcaaagacataaatgatCagatggatgagtctttcaga	8	5	4	5			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111638039	A	A	111638039	3	1	162	1	0	0	0	0	1	0	0	0	11947	827	29	3	1935	3	PHLDB2	3	111638039	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	11742840	111638039	86384391	60	135273											
CD200	4345	broad.mit.edu	37	chr3	112080563	112080563	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttactgccatctgagctactCagtgtttgaatcccaagagg	9	10	2	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112080563	T	T	112080563	1	4	162	0	1	0	0	0	0	0	0	0	3010	841	29	4		4	CD200	3	112080563	3'UTR	SNP	C	TCGA-50-5936-01A-11D-1625-08	442524	112080563	85941867	61	135274											
GTF2E1	2960	broad.mit.edu	37	chr3	120489792	120489792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtgagtgtaggccctGtgctcttactaagaacacat	11	9	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120489792	T	T	120489792	1	4	162	0	1	0	0	0	0	0	0	0	6921	1392	48	3		3	GTF2E1	3	120489792	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	8409229	120489792	77532638	62	135275											
ITGB5	3693	broad.mit.edu	37	chr3	124578095	124578095	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggcaactcaccgggccGgaggttcacggcaatctcct	13	13	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124578095	A	A	124578095	3	1	162	1	0	0	0	0	1	0	0	0	7968	1115	39	4	2096	4	ITGB5	3	124578095	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	4088303	124578095	73444335	63	135276											
CCDC37	348807	broad.mit.edu	37	chr3	126126012	126126012	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctcacttttgtgtctcctCagagaacagcctggaatcca	7	14	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126126012	G	G	126126012	1	3	162	0	1	0	0	0	0	0	0	0	2836	841	29	4		4	CCDC37	3	126126012	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	1547917	126126012	71896418	64	135277											
PIK3CB	5291	broad.mit.edu	37	chr3	138423380	138423380	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattttggctctcatatttGtagaattttaagtgtaaatg	8	3	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138423380	A	A	138423380	1	1	162	0	1	0	0	0	0	0	0	0	12009	1392	48	4		4	PIK3CB	3	138423380	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	12297368	138423380	59599050	65	135278											
PLSCR5	389158	broad.mit.edu	37	chr3	146307604	146307604	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcattaatggttttcacctTtagaaagaaaataaggagta	7	4	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146307604	G	G	146307604	1	3	162	0	1	0	0	0	0	0	0	0	12208	1856	64	5		5	PLSCR5	3	146307604	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	7884224	146307604	51714826	66	135279											
MLF1	4291	broad.mit.edu	37	chr3	158322896	158322896	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttctcagggagaaacctCaacaaagtccagccattgaa	7	10	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158322896	T	T	158322896	4	4	162	1	0	0	0	0	0	1	0	0	9707	827	29	4	738	4	MLF1	3	158322896	Nonsense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	12015292	158322896	39699534	67	135280											
MAP3K13	9175	broad.mit.edu	37	chr3	185146488	185146488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggggaaccacccttctcCcaagctgctcgaggaccagc	10	15	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185146488	A	A	185146488	3	1	162	1	0	0	0	0	1	0	0	0	9339	623	22	2	121	2	MAP3K13	3	185146488	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	26823592	185146488	12875942	68	135281											
ZNF718	255403	broad.mit.edu	37	chr4	106063	106063	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttctctactcttcctagAagcagacagcagcagtgaat	9	10	2	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106063	T	T	106063	1	4	162	0	1	0	0	0	0	0	0	0	18248	261	9	5		5	ZNF718	4	106063	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08		106063	191048213	69	135282											
CNO	55330	broad.mit.edu	37	chr4	6718324	6718324	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaaggccgccgagatgcggCgcatctacagcaggatcgac	14	13	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6718324	T	T	6718324	3	4	162	1	0	0	0	0	1	0	0	0	3648	768	27	4	390	4	CNO	4	6718324	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	6612261	6718324	184435952	70	135283											
CLNK	116449	broad.mit.edu	37	chr4	10559969	10559969	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacagtaatgcgagaggaTcttagaagcaaaatagatgt	10	5	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10559969	G	G	10559969	1	3	162	0	1	0	0	0	0	0	0	0	3579	1450	50	5		5	CLNK	4	10559969	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	3841645	10559969	180594307	71	135284											
CWH43	80157	broad.mit.edu	37	chr4	49046710	49046710	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaacagcatgtacaaagaGatatttatcatgtagctcac	7	7	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49046710	A	A	49046710	1	1	162	0	1	0	0	0	0	0	0	0	4106	957	33	4		4	CWH43	4	49046710	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	38486741	49046710	142107566	72	135285											
UBE2D3	7323	broad.mit.edu	37	chr4	103722779	103722779	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatcttttaaagcaaaactTaaaataatcaagccacaatg	3	8	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103722779	A	A	103722779	1	1	162	0	1	0	0	0	0	0	0	0	16976	1769	61	5		5	UBE2D3	4	103722779	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	54676069	103722779	87431497	73	135286											
PCDH10	57575	broad.mit.edu	37	chr4	134073258	134073258	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgacccccagcggccttatGagctggtgatcgaggtgcgc	15	13	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134073258	A	A	134073258	3	1	162	1	0	0	0	0	1	0	0	0	11601	1291	45	4	1965	4	PCDH10	4	134073258	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	30350479	134073258	57081018	74	135287											
C4orf41	60684	broad.mit.edu	37	chr4	184596357	184596357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaaaatagctttcttcaGtgagttgaaacaagatacac	7	7	3	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184596357	T	T	184596357	3	4	162	1	0	0	0	0	1	0	0	0	2293	1029	36	3	723	3	C4orf41	4	184596357	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	50523099	184596357	6557919	75	135288											
TRIML2	205860	broad.mit.edu	37	chr4	189013107	189013107	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaaatgtcctatcaggagaGaaaaccctcgttaacctagg	8	9	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189013107	A	A	189013107	1	1	162	0	1	0	0	0	0	0	0	0	16676	957	33	4		4	TRIML2	4	189013107	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	4416750	189013107	2141169	76	135289											
DNAH5	1767	broad.mit.edu	37	chr5	13911489	13911489	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaggaattttattatacaAcctacatgaaggtcattagt	6	6	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13911489	G	G	13911489	1	3	162	0	1	0	0	0	0	0	0	0	4644	58	2	5		5	DNAH5	5	13911489	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08		13911489	167003771	77	135290											
DNAH5	1767	broad.mit.edu	37	chr5	13931342	13931342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttggcttccttctctccCttcagtctttgctaaaagaa	6	13	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13931342	A	A	13931342	3	1	162	1	0	0	0	0	1	0	0	0	4644	680	24	2	14117	2	DNAH5	5	13931342	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	19853	13931342	166983918	78	135291											
UGT3A1	133688	broad.mit.edu	37	chr5	35954243	35954244	+	3'UTR	DNP	GG	CT	CT													agaggggtggcgtgtgctggGgtggggagaaccttcaaagg							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	35954244	CT	CT	35954243	1	2	162	0	1	0	0	0	0	0	0	0	17089	1247	43	4		4	UGT3A1	5	35954243	3'UTR	DNP	GG	TCGA-50-5936-01A-11D-1625-08	22022901	35954243	144961017	79	135292											
ZFYVE16	9765	broad.mit.edu	37	chr5	79734068	79734068	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttaatattgatgaaggcGcaaaaagtggcccactaatt	8	7	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79734068	A	A	79734068	3	1	162	1	0	0	0	0	1	0	0	0	17790	1087	38	4	1570	4	ZFYVE16	5	79734068	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	43779825	79734068	101181192	80	135293											
GPR98	84059	broad.mit.edu	37	chr5	89923136	89923136	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcattaagaaaaatgatAgtcccgtgagattccttcag	7	8	3	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89923136	T	T	89923136	3	4	162	1	0	0	0	0	1	0	0	0	6787	420	15	5	807	5	GPR98	5	89923136	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	10189068	89923136	90992124	81	135294											
ANKRD32	84250	broad.mit.edu	37	chr5	94027746	94027746	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccaaaagtcctacttctgCtgttttaaaacttgccttga	5	10	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94027746	T	T	94027746	1	4	162	0	1	0	0	0	0	0	0	0	660	812	28	4		4	ANKRD32	5	94027746	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	4104610	94027746	86887514	82	135295											
ZNF474	133923	broad.mit.edu	37	chr5	121488198	121488198	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgccctgtgaatcctgTggccgcacattcttgccaga	10	14	1	2	rs150551514	by1000genomes	TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121488198	G	G	121488198	3	3	162	1	0	0	0	0	1	0	0	0	18059	1702	59	5	515	5	ZNF474	5	121488198	Missense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	27460452	121488198	59427062	83	135296											
ACSL6	23305	broad.mit.edu	37	chr5	131295317	131295318	+	Intron	DNP	GA	AT	AT													gatcctgaatcaaaccatatGagaaaaattacaagacaaga							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	131295318	AT	AT	131295317	1	1	162	0	1	0	0	0	0	0	0	0	181	1305	45	4		4	ACSL6	5	131295317	Intron	DNP	GA	TCGA-50-5936-01A-11D-1625-08	9807119	131295317	49619943	84	135297											
KDM3B	51780	broad.mit.edu	37	chr5	137734048	137734048	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgccagctcgtaatgtctGagaaggaggccatgatgatg	13	8	2	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137734048	C	C	137734048	3	2	162	1	0	0	0	0	1	0	0	0	8197	1291	45	4	3051	4	KDM3B	5	137734048	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	6438731	137734048	43181212	85	135298											
PCDHB14	56122	broad.mit.edu	37	chr5	140605416	140605416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaagttcatgacactgGtaggaatatgggggaaatcg	12	5	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605416	T	T	140605416	3	4	162	1	0	0	0	0	1	0	0	0	11633	1261	44	3	2341	3	PCDHB14	5	140605416	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	2871368	140605416	40309844	86	135299											
PCDHGB2	56103	broad.mit.edu	37	chr5	140741814	140741814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttgatctcagtgctcttcttCctcgcggtgattctggcaat	9	11	4	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140741814	G	G	140741814	3	3	162	1	0	0	0	0	1	0	0	0	11657	854	30	4	2114	4	PCDHGB2	5	140741814	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	136398	140741814	40173446	87	135300											
DIAPH1	1729	broad.mit.edu	37	chr5	140956963	140956963	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttacattttccttttacaGaacaatctttgaatttaagg	4	7	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140956963	A	A	140956963	1	1	162	0	1	0	0	0	0	0	0	0	4558	957	33	4		4	DIAPH1	5	140956963	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	215149	140956963	39958297	88	135301											
LARS	51520	broad.mit.edu	37	chr5	145529278	145529278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatctaaaaggatgagagGggagaaaaaccacatataaa	10	4	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145529278	A	A	145529278	1	1	162	0	1	0	0	0	0	0	0	0	8706	1247	43	4		4	LARS	5	145529278	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	4572315	145529278	35385982	89	135302											
PPARGC1B	133522	broad.mit.edu	37	chr5	149216733	149216733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggatccctgggaagcttGctctgaaactgaggctgcat	14	9	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149216733	T	T	149216733	1	4	162	0	1	0	0	0	0	0	0	0	12397	1334	46	3		3	PPARGC1B	5	149216733	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	3687455	149216733	31698527	90	135303											
PRL	5617	broad.mit.edu	37	chr6	22292896	22292896	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaaatgatgagacaaattCaattagttggggttgtttgg	13	2	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22292896	T	T	22292896	1	4	162	0	1	0	0	0	0	0	0	0	12634	841	29	4		4	PRL	6	22292896	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08		22292896	148822171	91	135304											
VARS	7407	broad.mit.edu	37	chr6	31746796	31746796	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaccttgacaggatagcccGaggcagcacggcgttcccgc	13	15	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31746796	A	A	31746796	3	1	162	1	0	0	0	0	1	0	0	0	17250	1059	37	4	128	4	VARS	6	31746796	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	9453900	31746796	139368271	92	135305											
CRISP3	10321	broad.mit.edu	37	chr6	49704133	49704133	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgtttctggcagggggagAtactgctctcctcagttcat	11	10	4	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49704133	T	T	49704133	3	4	162	1	0	0	0	0	1	0	0	0	3913	333	12	5	601	5	CRISP3	6	49704133	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	17957337	49704133	121410934	93	135306											
TFAP2B	7021	broad.mit.edu	37	chr6	50803685	50803685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccacttggtgtctgtcCtgtggcctcacacagagaca	9	13	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50803685	A	A	50803685	1	1	162	0	1	0	0	0	0	0	0	0	15911	696	24	2		2	TFAP2B	6	50803685	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	1099552	50803685	120311382	94	135307											
TINAG	27283	broad.mit.edu	37	chr6	54245341	54245341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagatggggcacactgagagGagcacaagggcagaaagaaa	15	6	0	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54245341	T	T	54245341	3	4	162	1	0	0	0	0	1	0	0	0	16044	1174	41	3	1306	3	TINAG	6	54245341	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	3441656	54245341	116869726	95	135308											
DOPEY1	23033	broad.mit.edu	37	chr6	83868250	83868250	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgaaaggattaaatatccAgtttaaataaacatttaaca	4	5	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83868250	G	G	83868250	1	3	162	0	1	0	0	0	0	0	0	0	4747	203	7	5		5	DOPEY1	6	83868250	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	29622909	83868250	87246817	96	135309											
BACH2	60468	broad.mit.edu	37	chr6	90660737	90660737	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctggactcctggcaaagTgctgctgagatgtactgggc	15	9	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90660737	A	A	90660737	3	1	162	1	0	0	0	0	1	0	0	0	1289	1696	59	5	1449	5	BACH2	6	90660737	Missense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	6792487	90660737	80454330	97	135310											
AKD1	221264	broad.mit.edu	37	chr6	109978150	109978150	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actattcaatttacaagccaTattccccactccttacacct	1	15	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109978150	C	C	109978150	1	2	162	0	1	0	0	0	0	0	0	0	460	1421	49	5		5	AKD1	6	109978150	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	19317413	109978150	61136917	98	135311											
SLC22A16	85413	broad.mit.edu	37	chr6	110763563	110763563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacggtaagtgtccttttcGtaatgctccagttataaaac	7	8	0	0	rs140212592		TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110763563	T	T	110763563	3	4	162	1	0	0	0	0	1	0	0	0	14560	1145	40	3	686	3	SLC22A16	6	110763563	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	785413	110763563	60351504	99	135312											
FRK	2444	broad.mit.edu	37	chr6	116263687	116263687	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccttaggctctgcattccAgcactccaacatgatgttgt	7	12	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116263687	G	G	116263687	3	3	162	1	0	0	0	0	1	0	0	0	6108	188	7	5	113	5	FRK	6	116263687	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	5500124	116263687	54851380	100	135313											
MAP3K5	4217	broad.mit.edu	37	chr6	136963676	136963676	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctcactcccctgacagaaGaggcactaaaattccactca	5	15	2	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136963676	C	C	136963676	3	2	162	1	0	0	0	0	1	0	0	0	9345	942	33	4	2380	4	MAP3K5	6	136963676	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	20699989	136963676	34151391	101	135314											
REPS1	85021	broad.mit.edu	37	chr6	139241422	139241422	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaaaaggtcagatggtttCacaagtaatgggctagtggg	13	5	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139241422	A	A	139241422	2	1	162	1	0	0	0	0	0	0	0	1	13336	813	29	3		3	REPS1	6	139241422	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	2277746	139241422	31873645	102	135315											
FNDC1	84624	broad.mit.edu	37	chr6	159660620	159660620	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggggcgacatggcacacctCtggccaatgcccaagataag	12	12	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159660620	A	A	159660620	3	1	162	1	0	0	0	0	1	0	0	0	6026	912	32	3	4306	3	FNDC1	6	159660620	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	20419198	159660620	11454447	103	135316											
PDGFA	5154	broad.mit.edu	37	chr7	550631	550631	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagacagcggggacagcttCctctgcaacggcgggggcac	16	13	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	550631	A	A	550631	4	1	162	1	0	0	0	0	0	1	0	0	11751	864	30	3	394	3	PDGFA	7	550631	Nonsense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08		550631	158588032	104	135317											
LFNG	3955	broad.mit.edu	37	chr7	2566061	2566061	+	Intron	DEL	C	-	-													caggtgcaccatcctccgggCcccgccaggactccgagagc							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2566061	-	-	2566061	6	5	162	0	1	1	0	1	0	0	0	0	8809	754	26	0		0	LFNG	7	2566061	Intron	DEL	C	TCGA-50-5936-01A-11D-1625-08	2015430	2566061	156572602	105	135318											
SDK1	221935	broad.mit.edu	37	chr7	4281609	4281609	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccagggctggggtggcagCccacgcccactggcacctcc	14	17	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4281609	G	G	4281609	1	3	162	0	1	0	0	0	0	0	0	0	14081	754	26	4		4	SDK1	7	4281609	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	1715548	4281609	154857054	106	135319											
MIOS	54468	broad.mit.edu	37	chr7	7612605	7612605	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtgaaactttcagcaggtGaaactgaaacaacattatta	7	6	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7612605	A	A	7612605	3	1	162	1	0	0	0	0	1	0	0	0	9682	1291	45	4	501	4	MIOS	7	7612605	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	3330996	7612605	151526058	107	135320											
HDAC9	9734	broad.mit.edu	37	chr7	18868872	18868872	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactgttgcccatctccaagCaccacggttcctggcggtca	10	15	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18868872	G	G	18868872	1	3	162	0	1	0	0	0	0	0	0	0	7081	725	25	4		4	HDAC9	7	18868872	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	11256267	18868872	140269791	108	135321											
ZMIZ2	83637	broad.mit.edu	37	chr7	44799010	44799010	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggctgcccctgcagcaggGcatgacccagtccctgtccg	12	17	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44799010	C	C	44799010	3	2	162	1	0	0	0	0	1	0	0	0	17823	1203	42	4	966	4	ZMIZ2	7	44799010	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	25930138	44799010	114339653	109	135322											
IKZF1	10320	broad.mit.edu	37	chr7	50444181	50444182	+	Intron	INS	-	T	T													tgctgtgttgttttgttgagINSttttttttttgcaatgacac					rs112450927		TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50444182	T	T	50444181	6	5	162	0	1	1	1	0	0	0	0	0	7684	1044	36	0		0	IKZF1	7	50444181	Intron	INS	-	TCGA-50-5936-01A-11D-1625-08	5645171	50444181	108694482	110	135323											
ELN	2006	broad.mit.edu	37	chr7	73462547	73462547	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaggtaaggaaagcctcaCgtcacttccagccaagggag	12	11	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73462547	T	T	73462547	1	4	162	0	1	0	0	0	0	0	0	0	5113	551	19	4		4	ELN	7	73462547	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	23018366	73462547	85676116	111	135324											
ZNF804B	219578	broad.mit.edu	37	chr7	88847431	88847431	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatctggttatgctattagaGagaagtctaaccaacattta	8	6	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88847431	T	T	88847431	1	4	162	0	1	0	0	0	0	0	0	0	18300	957	33	3		3	ZNF804B	7	88847431	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	15384884	88847431	70291232	112	135325											
ZNF804B	219578	broad.mit.edu	37	chr7	88847483	88847483	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaaggattttgcagaaaaGaagtccacagcaaaggccct	9	8	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88847483	C	C	88847483	3	2	162	1	0	0	0	0	1	0	0	0	18300	933	33	4	129	4	ZNF804B	7	88847483	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	52	88847483	70291180	113	135326											
AGFG2	3268	broad.mit.edu	37	chr7	100159952	100159952	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccaaacagcctcgcagaCgtgggcagcttcctgggacc	12	15	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100159952	T	T	100159952	2	4	162	1	0	0	0	0	0	0	0	1	381	535	19	4		4	AGFG2	7	100159952	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	11312469	100159952	58978711	114	135327											
RELN	5649	broad.mit.edu	37	chr7	103180586	103180586	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttgaactaaatgccttctAaggccacattcagctcaagt	8	10	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103180586	T	T	103180586	1	4	162	0	1	0	0	0	0	0	0	0	13328	377	13	5		5	RELN	7	103180586	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	3020634	103180586	55958077	115	135328											
RELN	5649	broad.mit.edu	37	chr7	103180626	103180626	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacgacaattaaaatagttAatcctgaagggactgacctg	9	7	0	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103180626	G	G	103180626	1	3	162	0	1	0	0	0	0	0	0	0	13328	377	13	5		5	RELN	7	103180626	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	40	103180626	55958037	116	135329											
GPR22	2845	broad.mit.edu	37	chr7	107115456	107115456	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcttcaggatgtctttattGattatttctacatttcttct	5	7	6	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107115456	A	A	107115456	2	1	162	1	0	0	0	0	0	0	0	1	6747	1281	45	4		4	GPR22	7	107115456	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	3934830	107115456	52023207	117	135330											
DOCK4	9732	broad.mit.edu	37	chr7	111629071	111629071	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgatgctcaatactcactCattgccccagtcaagccggg	9	13	4	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111629071	G	G	111629071	3	3	162	1	0	0	0	0	1	0	0	0	4729	840	29	4	5625	4	DOCK4	7	111629071	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	4513615	111629071	47509592	118	135331											
AKR1D1	6718	broad.mit.edu	37	chr7	137761344	137761344	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catcggacttggtacctactCagaacctaaatcggtaagct	8	11	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137761344	G	G	137761344	4	3	162	1	0	0	0	0	0	1	0	0	473	838	29	4	82	4	AKR1D1	7	137761344	Nonsense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	26132273	137761344	21377319	119	135332											
OR2A2	442361	broad.mit.edu	37	chr7	143807577	143807577	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagttgaagggcgccctccAcagagcactccagaggaaga	12	12	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143807577	C	C	143807577	3	2	162	1	0	0	0	0	1	0	0	0	11071	159	6	5	904	5	OR2A2	7	143807577	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	6046233	143807577	15331086	120	135333											
DPP6	1804	broad.mit.edu	37	chr7	154645370	154645370	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgattactcttgcatgaattCgggttctccaggctccgcac	9	12	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154645370	T	T	154645370	1	4	162	0	1	0	0	0	0	0	0	0	4770	899	31	4		4	DPP6	7	154645370	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	10837793	154645370	4493293	121	135334											
VIPR2	7434	broad.mit.edu	37	chr7	158935386	158935386	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccaatcaccttgatttttCtggcattttttaaaaacttc	3	9	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158935386	T	T	158935386	1	4	162	0	1	0	0	0	0	0	0	0	17297	928	32	4		4	VIPR2	7	158935386	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	4290016	158935386	203277	122	135335											
TNKS	8658	broad.mit.edu	37	chr8	9609136	9609136	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggctgacgatatcagagcTttgctgatagatgccatgcc	11	9	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9609136	G	G	9609136	2	3	162	1	0	0	0	0	0	0	0	1	16442	1596	56	5		5	TNKS	8	9609136	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08		9609136	136754886	123	135336											
RP1L1	94137	broad.mit.edu	37	chr8	10467205	10467205	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcaagctgggagccactcTgcctctcgctggcacttggg	13	14	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10467205	G	G	10467205	3	3	162	1	0	0	0	0	1	0	0	0	13644	1580	55	5	2803	5	RP1L1	8	10467205	Missense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	858069	10467205	135896817	124	135337											
DLC1	10395	broad.mit.edu	37	chr8	12958176	12958177	+	Frame_Shift_Ins	INS	-	A	A													gaccaggtcttgttttggagINSaaaagacatcaaactcttca							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12958177	A	A	12958176	7	5	162	1	0	1	1	0	0	0	0	0	4590	942	33	0	2956	0	DLC1	8	12958176	Frame_Shift_Ins	INS	-	TCGA-50-5936-01A-11D-1625-08	2490971	12958176	133405846	125	135338											
CNOT7	29883	broad.mit.edu	37	chr8	17088094	17088094	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaacggtcatacttagtactGaaaggcagacaataaaatgg	10	6	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17088094	A	A	17088094	1	1	162	0	1	0	0	0	0	0	0	0	3656	1305	45	4		4	CNOT7	8	17088094	3'UTR	SNP	G	TCGA-50-5936-01A-11D-1625-08	4129918	17088094	129275928	126	135339											
FAM160B2	64760	broad.mit.edu	37	chr8	21951987	21951987	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgctgcaggccttcgtgGagcactggaagggcatcacg	14	12	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21951987	A	A	21951987	3	1	162	1	0	0	0	0	1	0	0	0	5517	1175	41	4	88	4	FAM160B2	8	21951987	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	4863893	21951987	124412035	127	135340											
NRG1	3084	broad.mit.edu	37	chr8	32616840	32616841	+	Frame_Shift_Ins	INS	-	G	G													cagcaatacgtatctaaaaaINScgtcatctccagtgagcata							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32616841	G	G	32616840	7	5	162	1	0	1	1	0	0	0	0	0	10742	43	2	0	2581	0	NRG1	8	32616840	Frame_Shift_Ins	INS	-	TCGA-50-5936-01A-11D-1625-08	10664853	32616840	113747182	128	135341											
GINS4	84296	broad.mit.edu	37	chr8	41387758	41387758	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttcctgggacaggactctGatgggggtagtgaggaagtg	17	5	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41387758	A	A	41387758	3	1	162	1	0	0	0	0	1	0	0	0	6454	1290	45	4	39	4	GINS4	8	41387758	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	8770918	41387758	104976264	129	135342											
POLB	5423	broad.mit.edu	37	chr8	42218903	42218903	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgcctcagagtttataatCaatggtgatcagtcttacac	9	8	4	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42218903	A	A	42218903	1	1	162	0	1	0	0	0	0	0	0	0	12284	841	29	3		3	POLB	8	42218903	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	831145	42218903	104145119	130	135343											
CYP7A1	1581	broad.mit.edu	37	chr8	59409214	59409214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggaatggtgtttgcttgcGatgcccagaggaccacgagg	15	9	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59409214	A	A	59409214	3	1	162	1	0	0	0	0	1	0	0	0	4229	1059	37	4	673	4	CYP7A1	8	59409214	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	17190311	59409214	86954808	131	135344											
ARFGEF1	10565	broad.mit.edu	37	chr8	68114002	68114002	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaggtgatttccatgtccaGaattccctccctattcaagc	7	12	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68114002	A	A	68114002	1	1	162	0	1	0	0	0	0	0	0	0	854	957	33	4		4	ARFGEF1	8	68114002	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	8704788	68114002	78250020	132	135345											
CDH17	1015	broad.mit.edu	37	chr8	95161147	95161147	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcctgcattactttgcAtgaaaatgtgaagctagttt	9	6	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95161147	G	G	95161147	1	3	162	0	1	0	0	0	0	0	0	0	3132	232	8	5		5	CDH17	8	95161147	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	27047145	95161147	51202875	133	135346											
ZFPM2	23414	broad.mit.edu	37	chr8	106431460	106431460	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagactttccattggaGgaaagcttttccacagaatt	9	7	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106431460	C	C	106431460	3	2	162	1	0	0	0	0	1	0	0	0	17784	991	35	4	135	4	ZFPM2	8	106431460	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	11270313	106431460	39932562	134	135347											
ZFPM2	23414	broad.mit.edu	37	chr8	106814836	106814836	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttatctcagtctgagcgGacgaccacgtctcccaaaag	9	12	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106814836	T	T	106814836	2	4	162	1	0	0	0	0	0	0	0	1	17784	1161	41	3		3	ZFPM2	8	106814836	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	383376	106814836	39549186	135	135348											
KCNV1	27012	broad.mit.edu	37	chr8	110984680	110984680	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttaggaagcgacacctGtcccgcacacacaggaagcg	10	13	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110984680	A	A	110984680	2	1	162	1	0	0	0	0	0	0	0	1	8164	1368	48	4		4	KCNV1	8	110984680	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	4169844	110984680	35379342	136	135349											
TRPS1	7227	broad.mit.edu	37	chr8	116426804	116426804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtcattatgtacaaagGgaagtccaaaaagtgggtac	12	5	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116426804	T	T	116426804	3	4	162	1	0	0	0	0	1	0	0	0	16718	1232	43	2	556	2	TRPS1	8	116426804	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	5442124	116426804	29937218	137	135350											
RAD21	5885	broad.mit.edu	37	chr8	117862744	117862744	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaattttgcttatattctaAcatttttaaataactctgat	2	5	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117862744	C	C	117862744	1	2	162	0	1	0	0	0	0	0	0	0	13089	58	2	5		5	RAD21	8	117862744	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	1435940	117862744	28501278	138	135351											
TG	7038	broad.mit.edu	37	chr8	134128747	134128747	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtaggcctggcaggggTgggttgggggcccagggggc	22	8	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134128747	G	G	134128747	1	3	162	0	1	0	0	0	0	0	0	0	15936	1711	59	5		5	TG	8	134128747	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	16266003	134128747	12235275	139	135352											
CPSF1	29894	broad.mit.edu	37	chr8	145625940	145625940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccccgcagagacccagGcccagctcctcccgagcaag	10	20	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145625940	T	T	145625940	1	4	162	0	1	0	0	0	0	0	0	0	3856	1218	42	3		3	CPSF1	8	145625940	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	11497193	145625940	738082	140	135353											
ZNF250	58500	broad.mit.edu	37	chr8	146107103	146107103	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtcctcaggtgcacaatcaGagttgctttcaggctgaagg	13	9	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146107103	C	C	146107103	3	2	162	1	0	0	0	0	1	0	0	0	17921	933	33	4	206	4	ZNF250	8	146107103	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	481163	146107103	256919	141	135354											
KIAA1432	57589	broad.mit.edu	37	chr9	5757362	5757362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggaggtttccatgtcaCgctacattcctcaccctttc	6	14	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5757362	A	A	5757362	3	1	162	1	0	0	0	0	1	0	0	0	8303	536	19	3	1728	3	KIAA1432	9	5757362	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08		5757362	135456069	142	135355											
TTC39B	158219	broad.mit.edu	37	chr9	15189720	15189720	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactttgaaatactgagcgTacatttggaaactgctggag	10	7	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15189720	G	G	15189720	1	3	162	0	1	0	0	0	0	0	0	0	16834	1625	57	5		5	TTC39B	9	15189720	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	9432358	15189720	126023711	143	135356											
CD72	971	broad.mit.edu	37	chr9	35611857	35611857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgttagagctgaggccagtCcaatatgaattccctgaacc	9	10	0	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35611857	A	A	35611857	3	1	162	1	0	0	0	0	1	0	0	0	3064	856	30	3	193	3	CD72	9	35611857	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	20422137	35611857	105601574	144	135357											
FLJ46321	389763	broad.mit.edu	37	chr9	84605787	84605787	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccgtctgtcgggtgtgtaaGagagcaactgctgatatcca	12	10	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84605787	C	C	84605787	3	2	162	1	0	0	0	0	1	0	0	0	5990	933	33	4	416	4	FLJ46321	9	84605787	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	48993930	84605787	56607644	145	135358											
MUSK	4593	broad.mit.edu	37	chr9	113449573	113449573	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaaacagattcgtctaTtgatttgaaagttgacttgg	12	4	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113449573	C	C	113449573	1	2	162	0	1	0	0	0	0	0	0	0	10083	1508	52	5		5	MUSK	9	113449573	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	28843786	113449573	27763858	146	135359											
C9orf84	158401	broad.mit.edu	37	chr9	114470265	114470265	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatacatatttttggtatgtCatatatttcactaccataaa	4	6	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114470265	T	T	114470265	1	4	162	0	1	0	0	0	0	0	0	0	2526	841	29	4		4	C9orf84	9	114470265	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	1020692	114470265	26743166	147	135360											
NDUFA8	4702	broad.mit.edu	37	chr9	124906576	124906576	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcaggctgcagatctccctCgatctcagggctgggatccg	14	13	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124906576	A	A	124906576	4	1	162	1	0	0	0	0	0	1	0	0	10366	893	31	3	59	3	NDUFA8	9	124906576	Nonsense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	10436311	124906576	16306855	148	135361											
FCN2	2220	broad.mit.edu	37	chr9	137777710	137777710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggggagttctggctgGggaatgacaacatccacgcc	16	10	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137777710	T	T	137777710	3	4	162	1	0	0	0	0	1	0	0	0	5849	1232	43	2	548	2	FCN2	9	137777710	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	12871134	137777710	3435721	149	135362											
OLFM1	10439	broad.mit.edu	37	chr9	137982234	137982235	+	Intron	INS	-	TT	TT													tttgtatgtgtgtgtgtttgINStgtgtgtgtgtgtgtgtgta					rs149127682	by1000genomes	TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	137982235	TT	TT	137982234	6	5	162	0	1	1	1	0	0	0	0	0	10947	1392	48	0		0	OLFM1	9	137982234	Intron	INS	-	TCGA-50-5936-01A-11D-1625-08	204524	137982234	3231197	150	135363											
PITRM1	10531	broad.mit.edu	37	chr10	3202411	3202411	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaggcttgtcccagggTgtctgagctggcaccacggt	13	13	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3202411	G	G	3202411	2	3	162	1	0	0	0	0	0	0	0	1	12048	1683	59	5		5	PITRM1	10	3202411	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08		3202411	132332336	151	135364											
ACBD7	414149	broad.mit.edu	37	chr10	15130604	15130604	+	Intron	DEL	C	-	-													tggggaaggagtgggcgtgtCccccgggtcaccgccgaccg							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15130604	-	-	15130604	6	5	162	0	1	1	0	1	0	0	0	0	127	870	30	0		0	ACBD7	10	15130604	Intron	DEL	C	TCGA-50-5936-01A-11D-1625-08	11928193	15130604	120404143	152	135365											
CUBN	8029	broad.mit.edu	37	chr10	17164686	17164686	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatttcctcatggagtacCaacttttggtggaatacaga	8	7	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17164686	T	T	17164686	1	4	162	0	1	0	0	0	0	0	0	0	4084	609	21	4		4	CUBN	10	17164686	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	2034082	17164686	118370061	153	135366											
NEBL	10529	broad.mit.edu	37	chr10	21120557	21120557	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgctctccaatcatttgaGaaactgctcaaaaatcgaga	7	9	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21120557	A	A	21120557	1	1	162	0	1	0	0	0	0	0	0	0	10398	957	33	4		4	NEBL	10	21120557	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	3955871	21120557	114414190	154	135367											
KIAA1462	57608	broad.mit.edu	37	chr10	30316110	30316110	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttcagctggataggacgcGggcagtggttttgcgtcact	16	8	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30316110	C	C	30316110	2	2	162	1	0	0	0	0	0	0	0	1	8304	1103	39	4		4	KIAA1462	10	30316110	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	9195553	30316110	105218637	155	135368											
SLC18A3	6572	broad.mit.edu	37	chr10	50818879	50818879	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcaggagccccggcggcaGaggcgcctggtgcttgttat	16	12	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50818879	A	A	50818879	2	1	162	1	0	0	0	0	0	0	0	1	14540	933	33	4		4	SLC18A3	10	50818879	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	20502769	50818879	84715868	156	135369											
PRKG1	5592	broad.mit.edu	37	chr10	54048708	54048708	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagggacaatccatcagaaaGattagggaatttgaaaaatg	10	4	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54048708	A	A	54048708	3	1	162	1	0	0	0	0	1	0	0	0	12628	942	33	4	2182	4	PRKG1	10	54048708	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	3229829	54048708	81486039	157	135370											
ANK3	288	broad.mit.edu	37	chr10	62038898	62038898	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagcaaggtggagagcgttCaacccattctgattaaaagt	11	7	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62038898	G	G	62038898	3	3	162	1	0	0	0	0	1	0	0	0	622	825	29	4	13405	4	ANK3	10	62038898	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	7990190	62038898	73495849	158	135371											
PPA1	5464	broad.mit.edu	37	chr10	71973273	71973273	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatggcaatgactttccagtCggtttccccttcgtcaatca	7	12	2	1	rs11538284		TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71973273	T	T	71973273	3	4	162	1	0	0	0	0	1	0	0	0	12382	884	31	4	436	4	PPA1	10	71973273	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	9934375	71973273	63561474	159	135372											
C10orf27	219793	broad.mit.edu	37	chr10	72539324	72539324	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcatgagccccagggtagAgggaggcatggcccaagtac	16	10	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72539324	T	T	72539324	1	4	162	0	1	0	0	0	0	0	0	0	1611	319	11	5		5	C10orf27	10	72539324	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	566051	72539324	62995423	160	135373											
CYP2C9	1559	broad.mit.edu	37	chr10	96731836	96731836	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctggtaaataatttgtcaGataattgcatcaaatcattc	6	6	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96731836	A	A	96731836	1	1	162	0	1	0	0	0	0	0	0	0	4201	957	33	4		4	CYP2C9	10	96731836	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	24192512	96731836	38802911	161	135374											
GOT1	2805	broad.mit.edu	37	chr10	101163595	101163595	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttccagatgcgaagccctGataggctgagtcaaagaagg	13	8	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101163595	C	C	101163595	3	2	162	1	0	0	0	0	1	0	0	0	6643	1299	45	4	578	4	GOT1	10	101163595	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	4431759	101163595	34371152	162	135375											
PCGF6	84108	broad.mit.edu	37	chr10	105108755	105108755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagagagattaatcaggCgctgcaaataaacggaaaca	10	8	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105108755	A	A	105108755	3	1	162	1	0	0	0	0	1	0	0	0	11672	782	27	3	726	3	PCGF6	10	105108755	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	3945160	105108755	30425992	163	135376											
C10orf79	80217	broad.mit.edu	37	chr10	105921673	105921673	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtaaaacttaagtagctCtttccaccccattccacctt	4	13	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105921673	G	G	105921673	1	3	162	0	1	0	0	0	0	0	0	0	1629	928	32	4		4	C10orf79	10	105921673	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	812918	105921673	29613074	164	135377											
SORCS3	22986	broad.mit.edu	37	chr10	106918643	106918643	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaaactatttctttctccAttttagcccttctgttcctt	3	11	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106918643	T	T	106918643	1	4	162	0	1	0	0	0	0	0	0	0	15046	232	8	5		5	SORCS3	10	106918643	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	996970	106918643	28616104	165	135378											
ATRNL1	26033	broad.mit.edu	37	chr10	117061315	117061315	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaacccatacaattgtGttaacatgaagttaaaaatg	6	5	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117061315	C	C	117061315	1	2	162	0	1	0	0	0	0	0	0	0	1211	1392	48	4		4	ATRNL1	10	117061315	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	10142672	117061315	18473432	166	135379											
ATRNL1	26033	broad.mit.edu	37	chr10	117607385	117607385	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaaagtgggttttctttttCagggggcacccaagccaatt	10	8	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117607385	T	T	117607385	1	4	162	0	1	0	0	0	0	0	0	0	1211	841	29	4		4	ATRNL1	10	117607385	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	546070	117607385	17927362	167	135380											
HSPA12A	259217	broad.mit.edu	37	chr10	118466670	118466670	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgcacccatgcgcgcacacAcacacacacacacacacaca	5	20	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118466670	G	G	118466670	1	3	162	0	1	0	0	0	0	0	0	0	7473	174	6	5		5	HSPA12A	10	118466670	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	859285	118466670	17068077	168	135381											
ALKBH3	221120	broad.mit.edu	37	chr11	43919643	43919643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggctgagtggcgatgccCtcagcagccccagtgcacct	14	14	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43919643	A	A	43919643	1	1	162	0	1	0	0	0	0	0	0	0	528	696	24	2		2	ALKBH3	11	43919643	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08		43919643	91086873	169	135382											
VWCE	220001	broad.mit.edu	37	chr11	61050424	61050424	+	Intron	SNP	C	T	T													gttcatttccccaacagaacCttggaaatatatggtcccct							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61050424	T	T	61050424	1	4	162	0	1	0	0	0	0	0	0	0	17372	696	24	4		4	VWCE	11	61050424	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	17130781	61050424	73956092	170	135383	578	2									
VWCE	220001	broad.mit.edu	37	chr11	61050430	61050430	+	Intron	SNP	A	C	C													ttccccaacagaaccttggaAatatatggtcccctcttcct							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61050430	C	C	61050430	1	2	162	0	1	0	0	0	0	0	0	0	17372	29	1	5		5	VWCE	11	61050430	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	6	61050430	73956086	171	135384	578	2									
NUDT22	84304	broad.mit.edu	37	chr11	63995007	63995007	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggggcagggggaagaggTggggagcaggggctgagcct	24	5	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63995007	G	G	63995007	1	3	162	0	1	0	0	0	0	0	0	0	10834	1711	59	5		5	NUDT22	11	63995007	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	2944577	63995007	71011509	172	135385											
MAP3K11	4296	broad.mit.edu	37	chr11	65375408	65375408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaccggccataagctgtgCgaagggctcggggcaggtgg	17	10	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65375408	A	A	65375408	3	1	162	1	0	0	0	0	1	0	0	0	9337	768	27	3	1521	3	MAP3K11	11	65375408	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	1380401	65375408	69631108	173	135386											
BBS1	582	broad.mit.edu	37	chr11	66282099	66282099	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttcaagttcagcctgcccCaattgcctccaaatcctctg	5	16	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66282099	T	T	66282099	4	4	162	1	0	0	0	0	0	1	0	0	1340	595	21	4	396	4	BBS1	11	66282099	Nonsense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	906691	66282099	68724417	174	135387											
ME3	10873	broad.mit.edu	37	chr11	86267677	86267677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattggcatgaacttctccaCgtccgaagtcagcactcggt	10	12	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86267677	A	A	86267677	3	1	162	1	0	0	0	0	1	0	0	0	9512	536	19	3	1477	3	ME3	11	86267677	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	19985578	86267677	48738839	175	135388											
UBE4A	9354	broad.mit.edu	37	chr11	118244462	118244462	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagagttttctcagaaagcaGatacagataaggctgctcaa	9	7	2	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118244462	C	C	118244462	1	2	162	0	1	0	0	0	0	0	0	0	17008	957	33	4		4	UBE4A	11	118244462	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	31976785	118244462	16762054	176	135389											
OR4D5	219875	broad.mit.edu	37	chr11	123810836	123810836	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctgccattctgtgggccTgacaagctggacaactttta	10	11	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123810836	C	C	123810836	2	2	162	1	0	0	0	0	0	0	0	1	11151	1567	55	5		5	OR4D5	11	123810836	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08	5566374	123810836	11195680	177	135390											
OR8B8	26493	broad.mit.edu	37	chr11	124310358	124310358	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatggtgactgtgggcacAccaatatcaatgcccacaac	9	11	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124310358	C	C	124310358	2	2	162	1	0	0	0	0	0	0	0	1	11324	146	6	5		5	OR8B8	11	124310358	Silent	SNP	A	TCGA-50-5936-01A-11D-1625-08	499522	124310358	10696158	178	135391											
C11orf61	79684	broad.mit.edu	37	chr11	124637469	124637469	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggcctctcaatacattctTcatagccaatggcataaagg	9	10	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124637469	C	C	124637469	3	2	162	1	0	0	0	0	1	0	0	0	1665	1783	62	5	400	5	C11orf61	11	124637469	Missense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	327111	124637469	10369047	179	135392											
PUS3	83480	broad.mit.edu	37	chr11	125765718	125765718	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagatactgggttttagaGacacaaataatctcagtact	7	7	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125765718	A	A	125765718	1	1	162	0	1	0	0	0	0	0	0	0	12940	957	33	4		4	PUS3	11	125765718	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	1128249	125765718	9240798	180	135393											
ETS1	2113	broad.mit.edu	37	chr11	128354828	128354828	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagggtctcggagaatgaccGaggggtagtcattctcatac	14	8	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128354828	A	A	128354828	3	1	162	1	0	0	0	0	1	0	0	0	5317	1059	37	4	721	4	ETS1	11	128354828	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	2589110	128354828	6651688	181	135394											
PRMT8	56341	broad.mit.edu	37	chr12	3677968	3677968	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgggctactgtctgttctAtgagtccatgctcaacacgg	11	10	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3677968	G	G	3677968	3	3	162	1	0	0	0	0	1	0	0	0	12648	449	16	5	596	5	PRMT8	12	3677968	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08		3677968	130173927	182	135395											
GALNT8	26290	broad.mit.edu	37	chr12	4872541	4872541	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgaagccactccacaccatCgtgggctatggaagagtatg	11	10	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4872541	T	T	4872541	2	4	162	1	0	0	0	0	0	0	0	1	6281	874	31	4		4	GALNT8	12	4872541	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	1194573	4872541	128979354	183	135396											
GAPDH	2597	broad.mit.edu	37	chr12	6647123	6647123	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctttgacgctggggctgGcattgccctcaacgaccact	10	15	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6647123	A	A	6647123	3	1	162	1	0	0	0	0	1	0	0	0	6298	1203	42	4	925	4	GAPDH	12	6647123	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	1774582	6647123	127204772	184	135397											
CD163L1	283316	broad.mit.edu	37	chr12	7527023	7527023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtagaggagggtgaaaaGgtagcagcacagacctgagc	16	6	0	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7527023	T	T	7527023	1	4	162	0	1	0	0	0	0	0	0	0	2998	1015	35	2		2	CD163L1	12	7527023	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	879900	7527023	126324872	185	135398											
RIMKLB	57494	broad.mit.edu	37	chr12	8866363	8866363	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaatccagaaatcaagtaGatttcttgatttacctttta	5	6	2	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8866363	C	C	8866363	1	2	162	0	1	0	0	0	0	0	0	0	13477	957	33	4		4	RIMKLB	12	8866363	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	1339340	8866363	124985532	186	135399											
CLEC9A	283420	broad.mit.edu	37	chr12	10193908	10193908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagggcacttttagtagGtattgtttttttaacgtctt	9	5	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10193908	T	T	10193908	1	4	162	0	1	0	0	0	0	0	0	0	3554	1276	44	3		3	CLEC9A	12	10193908	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	1327545	10193908	123657987	187	135400											
C12orf59	120939	broad.mit.edu	37	chr12	10332047	10332047	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaacgagagagagaaaagctGataaattcctgagaaaagtt	11	4	0	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10332047	A	A	10332047	1	1	162	0	1	0	0	0	0	0	0	0	1715	1305	45	4		4	C12orf59	12	10332047	5'UTR	SNP	G	TCGA-50-5936-01A-11D-1625-08	138139	10332047	123519848	188	135401											
GUCY2C	2984	broad.mit.edu	37	chr12	14778702	14778702	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccttaccttggaagcaaCataaagttaagtctgtcagc	8	9	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14778702	T	T	14778702	3	4	162	1	0	0	0	0	1	0	0	0	6961	478	17	4	852	4	GUCY2C	12	14778702	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	4446655	14778702	119073193	189	135402											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	162	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	10619583	25398285	108453610	190	135403											
C12orf11	55726	broad.mit.edu	37	chr12	27066581	27066581	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatatgggctctgacaagGgtttctaattcattccacat	8	8	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27066581	A	A	27066581	2	1	162	1	0	0	0	0	0	0	0	1	1688	1219	43	4		4	C12orf11	12	27066581	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	1668296	27066581	106785314	191	135404											
HDAC7	51564	broad.mit.edu	37	chr12	48192440	48192440	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgtccatggagagctgtGggcagggccggcagcccaga	18	11	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48192440	A	A	48192440	1	1	162	0	1	0	0	0	0	0	0	0	7079	1363	47	4		4	HDAC7	12	48192440	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	21125859	48192440	85659455	192	135405											
FAIM2	23017	broad.mit.edu	37	chr12	50283749	50283749	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccagctgagtgctcaagcaGaggaccctaggccaaagcct	11	13	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50283749	C	C	50283749	1	2	162	0	1	0	0	0	0	0	0	0	5422	957	33	4		4	FAIM2	12	50283749	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	2091309	50283749	83568146	193	135406											
FAIM2	23017	broad.mit.edu	37	chr12	50284790	50284790	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctggcagggctggggccaGaattttcatgatcctgctca	14	10	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50284790	C	C	50284790	1	2	162	0	1	0	0	0	0	0	0	0	5422	957	33	4		4	FAIM2	12	50284790	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	1041	50284790	83567105	194	135407											
KRT76	51350	broad.mit.edu	37	chr12	53162394	53162394	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagggaacttgaggaaaaAtgtggttgacccttatgcat	11	7	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53162394	C	C	53162394	1	2	162	0	1	0	0	0	0	0	0	0	8560	116	4	5		5	KRT76	12	53162394	3'UTR	SNP	A	TCGA-50-5936-01A-11D-1625-08	2877604	53162394	80689501	195	135408											
ZFC3H1	196441	broad.mit.edu	37	chr12	72022764	72022764	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatctgaaataggttttcTccaaaactttggcttccact	5	9	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72022764	G	G	72022764	2	3	162	1	0	0	0	0	0	0	0	1	17759	1559	54	5		5	ZFC3H1	12	72022764	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08	18860370	72022764	61829131	196	135409											
MYO1H	283446	broad.mit.edu	37	chr12	109872885	109872885	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagaactctgtttgctaccGaagatgcctttgaatttagt	8	9	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109872885	A	A	109872885	3	1	162	1	0	0	0	0	1	0	0	0	10169	1059	37	4	2137	4	MYO1H	12	109872885	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	37850121	109872885	23979010	197	135410											
NOS1	4842	broad.mit.edu	37	chr12	117672562	117672562	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgcacgaagatagttgaccGactgcaggaaattgcagagg	13	8	0	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117672562	A	A	117672562	3	1	162	1	0	0	0	0	1	0	0	0	10636	1072	37	4	1297	4	NOS1	12	117672562	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	7799677	117672562	16179333	198	135411											
MSI1	4440	broad.mit.edu	37	chr12	120795766	120795766	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcaaaactcaaccccAggtcgtaccaatatccccgc	7	16	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120795766	T	T	120795766	1	4	162	0	1	0	0	0	0	0	0	0	9969	203	7	5		5	MSI1	12	120795766	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	3123204	120795766	13056129	199	135412											
SFRS9	8683	broad.mit.edu	37	chr12	120899758	120899770	+	3'UTR	DEL	AGATTCTGAGCAC	-	-													aaatcctcaatctggaatgtAgattctgagcacaaagcagc							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120899770	-	-	120899758	6	5	162	0	1	1	0	1	0	0	0	0	14297	435	15	0		0	SFRS9	12	120899758	3'UTR	DEL	AGATTCTGAGCAC	TCGA-50-5936-01A-11D-1625-08	103992	120899758	12952137	200	135413											
KNTC1	9735	broad.mit.edu	37	chr12	123087269	123087269	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattctttggcacagcacagAacttctggaaaattctctgt	7	9	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123087269	C	C	123087269	3	2	162	1	0	0	0	0	1	0	0	0	8499	246	9	5	4985	5	KNTC1	12	123087269	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	2187511	123087269	10764626	201	135414											
SHISA2	387914	broad.mit.edu	37	chr13	26620830	26620830	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatactgcccttgatgtgGcacaatctgggtggcctgct	12	11	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26620830	A	A	26620830	3	1	162	1	0	0	0	0	1	0	0	0	14393	1203	42	4	182	4	SHISA2	13	26620830	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08		26620830	88549048	202	135415											
ZC3H13	23091	broad.mit.edu	37	chr13	46559563	46559563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctctcaaatggtttcggCcataactccgggattcttct	7	12	4	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46559563	T	T	46559563	3	4	162	1	0	0	0	0	1	0	0	0	17691	739	26	4	3137	4	ZC3H13	13	46559563	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	19938733	46559563	68610315	203	135416											
RCBTB1	55213	broad.mit.edu	37	chr13	50108475	50108475	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attacttctctctgagccctTtaccccaaatctctcaccct	2	17	4	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50108475	C	C	50108475	1	2	162	0	1	0	0	0	0	0	0	0	13279	1856	64	5		5	RCBTB1	13	50108475	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	3548912	50108475	65061403	204	135417											
PCID2	55795	broad.mit.edu	37	chr13	113832459	113832459	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggaccggtctcatcagcacAaccaaagtggaaagaaacaa	9	11	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113832459	C	C	113832459	1	2	162	0	1	0	0	0	0	0	0	0	11673	145	5	5		5	PCID2	13	113832459	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	63723984	113832459	1337419	205	135418											
METTL3	56339	broad.mit.edu	37	chr14	21968119	21968119	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgaaaagataaaactatgctCaacaaccttacctttctcaa	3	11	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21968119	G	G	21968119	1	3	162	0	1	0	0	0	0	0	0	0	9594	841	29	4		4	METTL3	14	21968119	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08		21968119	85381421	206	135419											
SEC23A	10484	broad.mit.edu	37	chr14	39536294	39536294	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaagtaaatattaaatttGattaatggcattttagaatt	6	1	0	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39536294	C	C	39536294	1	2	162	0	1	0	0	0	0	0	0	0	14104	1305	45	4		4	SEC23A	14	39536294	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	17568175	39536294	67813246	207	135420											
SYNJ2BP	55333	broad.mit.edu	37	chr14	70883600	70883600	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcccctactgtcagatatgAccctttccgcacatacctga	5	15	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70883600	G	G	70883600	1	3	162	0	1	0	0	0	0	0	0	0	15573	290	10	5		5	SYNJ2BP	14	70883600	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	31347306	70883600	36465940	208	135421											
C14orf68	283600	broad.mit.edu	37	chr14	100792080	100792080	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcaatggggttgaactgctCgccggccccactctcctcac	10	16	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100792080	T	T	100792080	1	4	162	0	1	0	0	0	0	0	0	0	1791	899	31	4		4	C14orf68	14	100792080	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	29908480	100792080	6557460	209	135422											
WARS	7453	broad.mit.edu	37	chr14	100819908	100819908	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catagcatttaataaaggaaGaagaacatttactaggcctt	7	6	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100819908	A	A	100819908	1	1	162	0	1	0	0	0	0	0	0	0	17376	957	33	4		4	WARS	14	100819908	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	27828	100819908	6529632	210	135423											
WDR25	79446	broad.mit.edu	37	chr14	100847837	100847837	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattaagcacggagacaggCaagggtaaagacgtggagcc	15	8	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100847837	T	T	100847837	2	4	162	1	0	0	0	0	0	0	0	1	17409	697	25	4		4	WDR25	14	100847837	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	27929	100847837	6501703	211	135424											
BRF1	2972	broad.mit.edu	37	chr14	105692426	105692426	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcttttgccaggctggccAggccccccttggcctttggc	11	16	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105692426	C	C	105692426	3	2	162	1	0	0	0	0	1	0	0	0	1519	188	7	5	1041	5	BRF1	14	105692426	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	4844589	105692426	1657114	212	135425											
UBE3A	7337	broad.mit.edu	37	chr15	25599468	25599468	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacacacccctttggtgaatCaaatcttcctctgaagaact	5	13	3	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25599468	A	A	25599468	1	1	162	0	1	0	0	0	0	0	0	0	17005	841	29	3		3	UBE3A	15	25599468	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08		25599468	76931924	213	135426											
CHST14	113189	broad.mit.edu	37	chr15	40764548	40764548	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtgtcagcagtgaccatGggtgtggggccagcagctgg	19	9	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40764548	C	C	40764548	1	2	162	0	1	0	0	0	0	0	0	0	3433	1363	47	4		4	CHST14	15	40764548	3'UTR	SNP	G	TCGA-50-5936-01A-11D-1625-08	15165080	40764548	61766844	214	135427											
LTK	4058	broad.mit.edu	37	chr15	41798042	41798042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagggggttaaccctagCtctagtcattgtccttccct	11	11	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41798042	A	A	41798042	1	1	162	0	1	0	0	0	0	0	0	0	9167	812	28	3		3	LTK	15	41798042	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	1033494	41798042	60733350	215	135428											
USP8	9101	broad.mit.edu	37	chr15	50769639	50769639	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaaccagttgctgcttcTaaatctgatgtttcacccat	7	10	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50769639	G	G	50769639	2	3	162	1	0	0	0	0	0	0	0	1	17216	1509	53	5		5	USP8	15	50769639	Silent	SNP	T	TCGA-50-5936-01A-11D-1625-08	8971597	50769639	51761753	216	135429											
CSPG4	1464	broad.mit.edu	37	chr15	75977457	75977457	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctgaaatgtgactccccGtctcctctctgtgtataacc	6	14	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75977457	A	A	75977457	1	1	162	0	1	0	0	0	0	0	0	0	3994	1160	40	4		4	CSPG4	15	75977457	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	25207818	75977457	26553935	217	135430											
ADAMTS7	11173	broad.mit.edu	37	chr15	79058500	79058500	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacgtcaggactaggagaGgagtgggtgctgccaacagg	17	9	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79058500	A	A	79058500	2	1	162	1	0	0	0	0	0	0	0	1	271	987	35	4		4	ADAMTS7	15	79058500	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	3081043	79058500	23472892	218	135431											
ARNT2	9915	broad.mit.edu	37	chr15	80869214	80869214	+	Silent	SNP	G	A	A													ctggttttcctagcggagaaGaagatgatgagctcagcctc							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80869214	A	A	80869214	2	1	162	1	0	0	0	0	0	0	0	1	970	933	33	4		4	ARNT2	15	80869214	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	1810714	80869214	21662178	219	135432	579	2									
ARNT2	9915	broad.mit.edu	37	chr15	80869217	80869217	+	Silent	SNP	G	A	A													gttttcctagcggagaagaaGatgatgagctcagcctctgc							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80869217	A	A	80869217	2	1	162	1	0	0	0	0	0	0	0	1	970	933	33	4		4	ARNT2	15	80869217	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	3	80869217	21662175	220	135433	579	2									
KIAA1199	57214	broad.mit.edu	37	chr15	81180152	81180152	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attccctccagtgtctctctGatcaagaggtgcagggcttt	10	11	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81180152	C	C	81180152	1	2	162	0	1	0	0	0	0	0	0	0	8283	1305	45	4		4	KIAA1199	15	81180152	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	310935	81180152	21351240	221	135434											
IDH2	3418	broad.mit.edu	37	chr15	90634804	90634804	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttctccttgatgaactgcCagataatacgggtcatctca	7	12	3	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90634804	T	T	90634804	4	4	162	1	0	0	0	0	0	1	0	0	7565	595	21	4	1210	4	IDH2	15	90634804	Nonsense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	9454652	90634804	11896588	222	135435											
CHD2	1106	broad.mit.edu	37	chr15	93523986	93523986	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctgaaggatagttattctGaagtagaacactttagaggt	10	4	2	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93523986	C	C	93523986	1	2	162	0	1	0	0	0	0	0	0	0	3356	1305	45	4		4	CHD2	15	93523986	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	2889182	93523986	9007406	223	135436											
CHD2	1106	broad.mit.edu	37	chr15	93524176	93524176	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagagggaaatttttttgaGaagtatgatctgtgagagtc	14	2	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93524176	C	C	93524176	1	2	162	0	1	0	0	0	0	0	0	0	3356	957	33	4		4	CHD2	15	93524176	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	190	93524176	9007216	224	135437											
PCSK6	5046	broad.mit.edu	37	chr15	101983872	101983872	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaggtttccaatctgcaaGacaagaagcagaatgccatc	8	11	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101983872	C	C	101983872	1	2	162	0	1	0	0	0	0	0	0	0	11698	957	33	4		4	PCSK6	15	101983872	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	8459696	101983872	547520	225	135438											
SRRM2	23524	broad.mit.edu	37	chr16	2813050	2813050	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcattccagttcatctcctCatcctaaagtgaaatctgga	6	11	5	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2813050	T	T	2813050	3	4	162	1	0	0	0	0	1	0	0	0	15287	826	29	4	2559	4	SRRM2	16	2813050	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08		2813050	87541703	226	135439											
GTF3C1	2975	broad.mit.edu	37	chr16	27481580	27481580	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagtgaaaaggccaccatgtCgtttgtgggctcgttattat	11	8	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27481580	T	T	27481580	3	4	162	1	0	0	0	0	1	0	0	0	6937	884	31	4	1694	4	GTF3C1	16	27481580	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	24668530	27481580	62873173	227	135440											
ZNF48	197407	broad.mit.edu	37	chr16	30408675	30408675	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggagtgagaacgtgatttCtcagccgaatgagtttgaac	13	6	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30408675	T	T	30408675	3	4	162	1	0	0	0	0	1	0	0	0	18061	913	32	4	110	4	ZNF48	16	30408675	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	2927095	30408675	59946078	228	135441											
ZNF48	197407	broad.mit.edu	37	chr16	30409150	30409150	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctggtgagcgccccactatCtgtggtgaatgtggcaagag	15	9	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30409150	G	G	30409150	3	3	162	1	0	0	0	0	1	0	0	0	18061	903	32	4	585	4	ZNF48	16	30409150	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	475	30409150	59945603	229	135442											
SRCAP	10847	broad.mit.edu	37	chr16	30732059	30732059	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcagccagtacctaagcaaGaaggccggacagtggtggtg	15	9	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30732059	C	C	30732059	3	2	162	1	0	0	0	0	1	0	0	0	15253	943	33	4	3083	4	SRCAP	16	30732059	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	322909	30732059	59622694	230	135443											
PRSS53	339105	broad.mit.edu	37	chr16	31099152	31099152	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagcggcttgaagacctggGaagagagagacacaggtaag	16	6	0	5			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31099152	A	A	31099152	1	1	162	0	1	0	0	0	0	0	0	0	12738	1189	41	4		4	PRSS53	16	31099152	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	367093	31099152	59255601	231	135444											
PHKB	5257	broad.mit.edu	37	chr16	47533691	47533691	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacattgctgctgtatcAaagtccaactaccggtctct	7	12	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47533691	G	G	47533691	3	3	162	1	0	0	0	0	1	0	0	0	11940	130	5	5	260	5	PHKB	16	47533691	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	16434539	47533691	42821062	232	135445											
N4BP1	9683	broad.mit.edu	37	chr16	48580307	48580307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctcaactgcctaaaagCggggaaaacacccaagtcaa	8	12	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48580307	A	A	48580307	1	1	162	0	1	0	0	0	0	0	0	0	10203	783	27	3		3	N4BP1	16	48580307	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	1046616	48580307	41774446	233	135446											
NKD1	85407	broad.mit.edu	37	chr16	50666372	50666372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggcagggcgtggctggaCgggccaggcgggccgtgcgg	24	10	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50666372	A	A	50666372	1	1	162	0	1	0	0	0	0	0	0	0	10536	551	19	3		3	NKD1	16	50666372	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	2086065	50666372	39688381	234	135447											
TSR1	55720	broad.mit.edu	37	chr17	2234267	2234267	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccttcaacctctttttcttCaacctctttaaagatgcttt	2	12	5	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2234267	T	T	2234267	3	4	162	1	0	0	0	0	1	0	0	0	16789	835	29	4	809	4	TSR1	17	2234267	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08		2234267	78960943	235	135448											
USP6	9098	broad.mit.edu	37	chr17	5050362	5050362	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctcccccttctcatcttGctgctgtttctgtagaactt	5	14	4	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5050362	A	A	5050362	1	1	162	0	1	0	0	0	0	0	0	0	17213	1334	46	4		4	USP6	17	5050362	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	2816095	5050362	76144848	236	135449											
PIK3R5	23533	broad.mit.edu	37	chr17	8792352	8792352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttagagcctgctcatGtgggagagctttggggacgg	16	8	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8792352	T	T	8792352	1	4	162	0	1	0	0	0	0	0	0	0	12017	1392	48	3		3	PIK3R5	17	8792352	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	3741990	8792352	72402858	237	135450											
DNAH9	1770	broad.mit.edu	37	chr17	11631220	11631220	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgaatctccgtggaggtctTgtcagtggtggcagtgcagg	16	8	3	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11631220	A	A	11631220	4	1	162	1	0	0	0	0	0	1	0	0	4648	1821	63	5	5905	5	DNAH9	17	11631220	Nonsense_Mutation	SNP	T	TCGA-50-5936-01A-11D-1625-08	2838868	11631220	69563990	238	135451											
MAP2K3	5606	broad.mit.edu	37	chr17	21204251	21204251	+	Frame_Shift_Del	DEL	G	-	-													atggacctggacatcaacatGcgcacggtcgactgtttcta							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21204251	-	-	21204251	7	5	162	1	0	1	0	1	0	0	0	0	9330	1319	46	0	363	0	MAP2K3	17	21204251	Frame_Shift_Del	DEL	G	TCGA-50-5936-01A-11D-1625-08	9573031	21204251	59990959	239	135452											
NUFIP2	57532	broad.mit.edu	37	chr17	27613317	27613317	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagtccgtttctccagctcGtaagccttgggaaacacagg	10	12	1	0	rs150088850		TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27613317	A	A	27613317	2	1	162	1	0	0	0	0	0	0	0	1	10844	1140	40	4		4	NUFIP2	17	27613317	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	6409066	27613317	53581893	240	135453											
HOXB5	3215	broad.mit.edu	37	chr17	46671010	46671010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccgggccatttggataaCgccccgagaaggagtttaca	12	10	0	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46671010	A	A	46671010	3	1	162	1	0	0	0	0	1	0	0	0	7371	536	19	3	782	3	HOXB5	17	46671010	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	19057693	46671010	34524200	241	135454											
KPNA2	3838	broad.mit.edu	37	chr17	66042019	66042019	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttcgttaagcttaattgaGaagtatttctctgtagaggt	10	5	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66042019	C	C	66042019	3	2	162	1	0	0	0	0	1	0	0	0	8501	933	33	4	1513	4	KPNA2	17	66042019	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	19371009	66042019	15153191	242	135455											
ABCA5	23461	broad.mit.edu	37	chr17	67267474	67267474	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aataaaaaatgagtctaaacGaggcttttagtaacactggg	9	5	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67267474	A	A	67267474	1	1	162	0	1	0	0	0	0	0	0	0	35	1073	37	4		4	ABCA5	17	67267474	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	1225455	67267474	13927736	243	135456											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74639579	74639579	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatgaggagtggaaaggacAagaatcttacctggaaggct	13	5	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74639579	T	T	74639579	1	4	162	0	1	0	0	0	0	0	0	0	15341	145	5	5		5	ST6GALNAC1	17	74639579	Intron	SNP	A	TCGA-50-5936-01A-11D-1625-08	7372105	74639579	6555631	244	135457											
NOTUM	147111	broad.mit.edu	37	chr17	79910829	79910829	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccggctcctcctccagaCagtctgcctagcttccgttg	10	16	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79910829	T	T	79910829	1	4	162	0	1	0	0	0	0	0	0	0	10647	493	17	4		4	NOTUM	17	79910829	3'UTR	SNP	C	TCGA-50-5936-01A-11D-1625-08	5271250	79910829	1284381	245	135458											
METTL4	64863	broad.mit.edu	37	chr18	2567170	2567170	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatcttgttgataaaagaaaGatgatccagtaaccacccag	7	8	1	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2567170	C	C	2567170	3	2	162	1	0	0	0	0	1	0	0	0	9595	942	33	4	1404	4	METTL4	18	2567170	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08		2567170	75510078	246	135459											
PTPRM	5797	broad.mit.edu	37	chr18	8406203	8406203	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccctttcataccacaaaGccaagacgttccatggtatt	5	12	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8406203	T	T	8406203	1	4	162	0	1	0	0	0	0	0	0	0	12914	986	34	3		3	PTPRM	18	8406203	3'UTR	SNP	G	TCGA-50-5936-01A-11D-1625-08	5839033	8406203	69671045	247	135460											
DSG3	1830	broad.mit.edu	37	chr18	29039000	29039000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctctgttcctagatcaCatgtcgggctctaaatgccc	7	14	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29039000	A	A	29039000	3	1	162	1	0	0	0	0	1	0	0	0	4818	478	17	3	395	3	DSG3	18	29039000	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	20632797	29039000	49038248	248	135461											
MED16	10025	broad.mit.edu	37	chr19	881766	881766	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatggagtaaagacaggctGagacagccgcaggagtccag	14	9	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	881766	A	A	881766	1	1	162	0	1	0	0	0	0	0	0	0	9527	1305	45	4		4	MED16	19	881766	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08		881766	58247217	249	135462											
THOP1	7064	broad.mit.edu	37	chr19	2813149	2813150	+	Missense_Mutation	DNP	GG	TT	TT													gaagctgcatcctgagacccGgcggttccgaggatgccagc							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	2813150	TT	TT	2813149	3	4	162	1	0	0	0	0	1	0	0	0	15994	1116	39	1	1995	1	THOP1	19	2813149	Missense_Mutation	DNP	GG	TCGA-50-5936-01A-11D-1625-08	1931383	2813149	56315834	250	135463											
KEAP1	9817	broad.mit.edu	37	chr19	10610574	10610574	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgcggttgccatgctGggagggcgtcacctccgcct	16	12	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610574	A	A	10610574	4	1	162	1	0	0	0	0	0	1	0	0	8211	1357	47	4	1758	4	KEAP1	19	10610574	Nonsense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	7797425	10610574	48518409	251	135464											
SMARCA4	6597	broad.mit.edu	37	chr19	11099962	11099962	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggtgccctggcaaccctctCaccgcctttgctccttgtct	9	17	2	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11099962	G	G	11099962	1	3	162	0	1	0	0	0	0	0	0	0	14884	841	29	4		4	SMARCA4	19	11099962	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	489388	11099962	48029021	252	135465											
SMARCA4	6597	broad.mit.edu	37	chr19	11100021	11100021	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgcatcgcacaccgaattCaggaacttgaaaaccttccc	6	15	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11100021	T	T	11100021	4	4	162	1	0	0	0	0	0	1	0	0	14884	827	29	4	1169	4	SMARCA4	19	11100021	Nonsense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	59	11100021	48028962	253	135466											
TSHZ3	57616	broad.mit.edu	37	chr19	31768163	31768163	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcagcatatcggatatatCtgacaaggcattctcgcgta	8	10	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31768163	G	G	31768163	3	3	162	1	0	0	0	0	1	0	0	0	16750	913	32	4	713	4	TSHZ3	19	31768163	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	20668142	31768163	27360820	254	135467											
SUPT5H	6829	broad.mit.edu	37	chr19	39962250	39962250	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctccccggctagggccgAgaaggggagattcgccatct	13	13	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39962250	G	G	39962250	2	3	162	1	0	0	0	0	0	0	0	1	15517	291	11	5		5	SUPT5H	19	39962250	Silent	SNP	A	TCGA-50-5936-01A-11D-1625-08	8194087	39962250	19166733	255	135468											
FLT3LG	2323	broad.mit.edu	37	chr19	49982278	49982278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcgccagaacttctcccGgtgcctggagctgcagtgtc	11	15	1	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49982278	T	T	49982278	3	4	162	1	0	0	0	0	1	0	0	0	6001	1116	39	1	473	1	FLT3LG	19	49982278	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	10020028	49982278	9146705	256	135469											
ZNF473	25888	broad.mit.edu	37	chr19	50548183	50548183	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactcagtcctgtgtccacCgtttccacgggagaagattc	11	12	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50548183	T	T	50548183	2	4	162	1	0	0	0	0	0	0	0	1	18058	639	23	4		4	ZNF473	19	50548183	Silent	SNP	C	TCGA-50-5936-01A-11D-1625-08	565905	50548183	8580800	257	135470											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56833781	56833781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcctacaaatttgtccaGgaggcgggcgaccccgcaac	12	13	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56833781	T	T	56833781	1	4	162	0	1	0	0	0	0	0	0	0	18367	1015	35	2		2	ZSCAN5A	19	56833781	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	6285598	56833781	2295202	258	135471											
RRBP1	6238	broad.mit.edu	37	chr20	17641179	17641179	+	Intron	DEL	A	-	-													ttgctttcctttcacctgtcAaacatacatggaggttacta							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17641179	-	-	17641179	6	5	162	0	1	1	0	1	0	0	0	0	13789	145	5	0		0	RRBP1	20	17641179	Intron	DEL	A	TCGA-50-5936-01A-11D-1625-08		17641179	45384341	259	135472											
DUSP15	128853	broad.mit.edu	37	chr20	30451754	30451754	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaaggcggcagcagtggatGaagttgatacattctttgaa	12	5	1	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30451754	A	A	30451754	2	1	162	1	0	0	0	0	0	0	0	1	4855	1281	45	4		4	DUSP15	20	30451754	Silent	SNP	G	TCGA-50-5936-01A-11D-1625-08	12810575	30451754	32573766	260	135473											
EIF6	3692	broad.mit.edu	37	chr20	33871963	33871963	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accactccctccctcggcgtCctccacctgccttacccaca	4	23	0	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33871963	A	A	33871963	1	1	162	0	1	0	0	0	0	0	0	0	5087	870	30	3		3	EIF6	20	33871963	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	3420209	33871963	29153557	261	135474											
SRC	6714	broad.mit.edu	37	chr20	36014605	36014605	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccccttccctattgcccctCagggctgggtggtgggactt	12	15	1	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36014605	A	A	36014605	1	1	162	0	1	0	0	0	0	0	0	0	15252	841	29	3		3	SRC	20	36014605	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	2142642	36014605	27010915	262	135475											
BAGE2	85319	broad.mit.edu	37	chr21	11026811	11026811	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgcacctcgaggtctcCgctttcttggaaatccagac	9	14	2	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11026811	T	T	11026811	1	4	162	0	1	0	0	0	0	0	0	0	1297	667	23	4		4	BAGE2	21	11026811	3'UTR	SNP	C	TCGA-50-5936-01A-11D-1625-08		11026811	37103084	263	135476											
IGSF5	150084	broad.mit.edu	37	chr21	41142827	41142827	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgtcttcaatgtgtttctCtcttttcttctttagttatg	5	8	6	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41142827	G	G	41142827	1	3	162	0	1	0	0	0	0	0	0	0	7672	928	32	4		4	IGSF5	21	41142827	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	30116016	41142827	6987068	264	135477											
LSS	4047	broad.mit.edu	37	chr21	47614325	47614325	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcctctctacattcactCagcccaggccaccggctcac	5	21	4	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47614325	T	T	47614325	1	4	162	0	1	0	0	0	0	0	0	0	9152	841	29	4		4	LSS	21	47614325	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	6471498	47614325	515570	265	135478											
CECR2	27443	broad.mit.edu	37	chr22	18022656	18022656	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaaccctgggagggcaccgGagaacagtgaagcacaagag	15	10	0	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18022656	A	A	18022656	3	1	162	1	0	0	0	0	1	0	0	0	3236	1175	41	4	2818	4	CECR2	22	18022656	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08		18022656	33281910	266	135479											
BCR	613	broad.mit.edu	37	chr22	23596223	23596223	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgaggctccctgaagcgCagccccatgctcaggggtat	14	12	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23596223	G	G	23596223	1	3	162	0	1	0	0	0	0	0	0	0	1393	725	25	4		4	BCR	22	23596223	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	5573567	23596223	27708343	267	135480											
LIF	3976	broad.mit.edu	37	chr22	30640019	30640019	+	Frame_Shift_Del	DEL	T	-	-													ggccacatagcttgtccaggTtgttggggaacggctccccc							TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30640019	-	-	30640019	7	5	162	1	0	1	0	1	0	0	0	0	8851	1725	60	0	382	0	LIF	22	30640019	Frame_Shift_Del	DEL	T	TCGA-50-5936-01A-11D-1625-08	7043796	30640019	20664547	268	135481											
MLC1	23209	broad.mit.edu	37	chr22	50506929	50506929	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctgaatgacagatatccaGaggctgtgaacagcagcgga	13	8	0	5			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50506929	C	C	50506929	3	2	162	1	0	0	0	0	1	0	0	0	9705	942	33	4	318	4	MLC1	22	50506929	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	19866910	50506929	797637	269	135482											
TUBGCP6	85378	broad.mit.edu	37	chr22	50682674	50682674	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcaagtcaaaggacaacAtgaggatcttgtttctcgct	8	10	4	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50682674	G	G	50682674	3	3	162	1	0	0	0	0	1	0	0	0	16896	217	8	5	5344	5	TUBGCP6	22	50682674	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	175745	50682674	621892	270	135483											
SFRS17A	8227	broad.mit.edu	37	chrX	1712156	1712156	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtgtactcttaatgatttCaaaaagtaaagaactccgtt	7	6	2	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1712156	G	G	1712156	1	3	162	0	1	0	0	0	0	0	0	0	14286	841	29	4		4	SFRS17A	23	1712156	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08		1712156	153558404	271	135484											
CD99	4267	broad.mit.edu	37	chrX	2635666	2635666	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaatgaaaacaagaaacccActgcaatccccaagaaaccc	4	14	0	3			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2635666	T	T	2635666	3	4	162	1	0	0	0	0	1	0	0	0	3080	159	6	5	131	5	CD99	23	2635666	Missense_Mutation	SNP	A	TCGA-50-5936-01A-11D-1625-08	923510	2635666	152634894	272	135485											
ACE2	59272	broad.mit.edu	37	chrX	15610305	15610305	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaatcatttttaaaatctGagagaaaagtaaatttcata	5	4	3	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15610305	A	A	15610305	1	1	162	0	1	0	0	0	0	0	0	0	137	1305	45	4		4	ACE2	23	15610305	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	12974639	15610305	139660255	273	135486											
MAP7D2	256714	broad.mit.edu	37	chrX	20083019	20083019	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggcacccgagtctgactGcacgtgcacatcatccatct	8	15	3	1			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20083019	T	T	20083019	1	4	162	0	1	0	0	0	0	0	0	0	9360	1334	46	3		3	MAP7D2	23	20083019	Intron	SNP	G	TCGA-50-5936-01A-11D-1625-08	4472714	20083019	135187541	274	135487											
USP11	8237	broad.mit.edu	37	chrX	47102208	47102208	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttaaccaccttctctcttCcctgcctctgcctcgttcac	3	20	4	0			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47102208	A	A	47102208	1	1	162	0	1	0	0	0	0	0	0	0	17168	870	30	3		3	USP11	23	47102208	Intron	SNP	C	TCGA-50-5936-01A-11D-1625-08	27019189	47102208	108168352	275	135488											
VSIG4	11326	broad.mit.edu	37	chrX	65259692	65259692	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagactcacctgcccagTaggaataggctttccatagt	10	10	1	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65259692	C	C	65259692	1	2	162	0	1	0	0	0	0	0	0	0	17352	1653	57	5		5	VSIG4	23	65259692	Intron	SNP	T	TCGA-50-5936-01A-11D-1625-08	18157484	65259692	90010868	276	135489											
MAGEE1	57692	broad.mit.edu	37	chrX	75648900	75648900	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctccgtggtgcccacccctGatgagggaccaagcacctcc	10	18	0	2			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75648900	A	A	75648900	3	1	162	1	0	0	0	0	1	0	0	0	9277	1290	45	4	579	4	MAGEE1	23	75648900	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	10389208	75648900	79621660	277	135490											
OCRL	4952	broad.mit.edu	37	chrX	128699793	128699793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattatagactttgcatgcCtgatgccaatgaggtgaaaa	10	6	0	4			TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128699793	A	A	128699793	3	1	162	1	0	0	0	0	1	0	0	0	10918	681	24	2	1339	2	OCRL	23	128699793	Missense_Mutation	SNP	C	TCGA-50-5936-01A-11D-1625-08	53050893	128699793	26570767	278	135491											
PRRG3	79057	broad.mit.edu	37	chrX	150869297	150869297	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgctggggcccagtcGggggggcaggaccacagtcc	20	11	0	0	rs139807152	byFrequency	TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150869297	C	C	150869297	3	2	162	1	0	0	0	0	1	0	0	0	12713	1116	39	4	498	4	PRRG3	23	150869297	Missense_Mutation	SNP	G	TCGA-50-5936-01A-11D-1625-08	22169504	150869297	4401263	279	135492											
CHD5	26038	broad.mit.edu	37	chr1	6203888	6203888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctccccactcacgtccaCaatgggcgtgtccggcggct	10	18	1	0	rs139532134		TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6203888	A	A	6203888	3	1	163	1	0	0	0	0	1	0	0	0	3359	478	17	3	3942	3	CHD5	1	6203888	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08		6203888	243046733	1	135493											
AADACL3	126767	broad.mit.edu	37	chr1	12785267	12785267	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatccacttcctgaagtcCctggatgcatatggagtgga	10	11	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12785267	A	A	12785267	2	1	163	1	0	0	0	0	0	0	0	1	12	610	22	2		2	AADACL3	1	12785267	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	6581379	12785267	236465354	2	135494											
WNT4	54361	broad.mit.edu	37	chr1	22447964	22447964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaccccatgcactgtcCtgtcacagccgcacttctcc	8	18	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22447964	T	T	22447964	3	4	163	1	0	0	0	0	1	0	0	0	17517	681	24	4	648	4	WNT4	1	22447964	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	9662697	22447964	226802657	3	135495											
SYTL1	84958	broad.mit.edu	37	chr1	27673817	27673817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtctgatttgctgttggGtccctggcccctggtcccaa	11	13	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27673817	T	T	27673817	1	4	163	0	1	0	0	0	0	0	0	0	15601	1276	44	3		3	SYTL1	1	27673817	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	5225853	27673817	221576804	4	135496											
KIAA0319L	79932	broad.mit.edu	37	chr1	35921751	35921751	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcacttggttggggcctgCgttggccacaggggggtaat	17	8	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35921751	T	T	35921751	3	4	163	1	0	0	0	0	1	0	0	0	8239	768	27	4	1678	4	KIAA0319L	1	35921751	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	8247934	35921751	213328870	5	135497											
PTPRF	5792	broad.mit.edu	37	chr1	44019085	44019085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggtctttctctctgccCccatgactgccaccttcctc	6	17	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44019085	T	T	44019085	1	4	163	0	1	0	0	0	0	0	0	0	12909	638	22	4		4	PTPRF	1	44019085	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	8097334	44019085	205231536	6	135498											
NRD1	4898	broad.mit.edu	37	chr1	52283748	52283748	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactcttacctgtaatgttGctgttgaggaggaagtgccc	11	8	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52283748	A	A	52283748	4	1	163	1	0	0	0	0	0	1	0	0	10740	1328	46	4	2192	4	NRD1	1	52283748	Nonsense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	8264663	52283748	196966873	7	135499											
TYW3	127253	broad.mit.edu	37	chr1	75204482	75204482	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagattctggtaaaatttTgttgtaattgtacttgaatt	7	4	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75204482	G	G	75204482	1	3	163	0	1	0	0	0	0	0	0	0	16946	1827	63	5		5	TYW3	1	75204482	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	22920734	75204482	174046139	8	135500											
LPHN2	23266	broad.mit.edu	37	chr1	82409477	82409477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgtttacttgctaatgCttatgtcattttgtgaaaag	9	5	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82409477	A	A	82409477	1	1	163	0	1	0	0	0	0	0	0	0	9003	812	28	3		3	LPHN2	1	82409477	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	7204995	82409477	166841144	9	135501											
LMO4	8543	broad.mit.edu	37	chr1	87805268	87805268	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcggacagtcgattcctGcgagtgaactcgtcatgagg	13	10	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87805268	C	C	87805268	3	2	163	1	0	0	0	0	1	0	0	0	8928	1319	46	4	292	4	LMO4	1	87805268	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	5395791	87805268	161445353	10	135502											
LRRC8B	23507	broad.mit.edu	37	chr1	90058463	90058463	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatctggagctcattggtaAttacctggaaacacttcctc	7	11	3	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90058463	G	G	90058463	3	3	163	1	0	0	0	0	1	0	0	0	9109	101	4	5	2279	5	LRRC8B	1	90058463	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	2253195	90058463	159192158	11	135503											
DENND2C	163259	broad.mit.edu	37	chr1	115168247	115168247	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctttcaatttctttgaccCgagaacatacccagttggat	7	10	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115168247	G	G	115168247	3	3	163	1	0	0	0	0	1	0	0	0	4470	652	23	4	2324	4	DENND2C	1	115168247	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	25109784	115168247	134082374	12	135504											
TTF2	8458	broad.mit.edu	37	chr1	117620454	117620454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtaagaaacagatacaGggccatttgtagctaagttc	12	6	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117620454	T	T	117620454	1	4	163	0	1	0	0	0	0	0	0	0	16845	1015	35	2		2	TTF2	1	117620454	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	2452207	117620454	131630167	13	135505											
HMGCS2	3158	broad.mit.edu	37	chr1	120300051	120300051	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcaagggtgaagggtcgAtcgctgccagctggaagagg	17	8	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120300051	T	T	120300051	3	4	163	1	0	0	0	0	1	0	0	0	7300	330	12	5	685	5	HMGCS2	1	120300051	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	2679597	120300051	128950570	14	135506											
SLC27A3	11000	broad.mit.edu	37	chr1	153748035	153748035	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgctgctgaagctacAcctctggccgcagttgcgct	12	14	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153748035	G	G	153748035	3	3	163	1	0	0	0	0	1	0	0	0	14641	159	6	5	205	5	SLC27A3	1	153748035	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	33447984	153748035	95502586	15	135507											
FCRL1	115350	broad.mit.edu	37	chr1	157771618	157771618	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaccatgggtagcaaaccCccggaagcacagtggcacca	10	16	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157771618	T	T	157771618	1	4	163	0	1	0	0	0	0	0	0	0	5851	638	22	4		4	FCRL1	1	157771618	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	4023583	157771618	91479003	16	135508											
FCER1A	2205	broad.mit.edu	37	chr1	159273855	159273855	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccacaatggcagcctttcaGaagagacaaattcaagtttg	8	9	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159273855	C	C	159273855	3	2	163	1	0	0	0	0	1	0	0	0	5831	943	33	4	224	4	FCER1A	1	159273855	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	1502237	159273855	89976766	17	135509											
VSIG8	391123	broad.mit.edu	37	chr1	159832247	159832247	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgctggctaccctgccccCtgcccagccccgtacctggg	10	20	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159832247	G	G	159832247	1	3	163	0	1	0	0	0	0	0	0	0	17353	696	24	4		4	VSIG8	1	159832247	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	558392	159832247	89418374	18	135510											
ALDH9A1	223	broad.mit.edu	37	chr1	165648625	165648625	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagctttaaaacacactgTtggatgagggggtagagatt	12	4	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165648625	C	C	165648625	1	2	163	0	1	0	0	0	0	0	0	0	506	1740	60	5		5	ALDH9A1	1	165648625	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	5816378	165648625	83601996	19	135511											
CFHR5	81494	broad.mit.edu	37	chr1	196963408	196963408	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagtatttattttagaagtGatgaaacaagaatttgattt	7	2	1	5			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196963408	A	A	196963408	1	1	163	0	1	0	0	0	0	0	0	0	3318	1305	45	4		4	CFHR5	1	196963408	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	31314783	196963408	52287213	20	135512											
TSNAX	7257	broad.mit.edu	37	chr1	231700631	231700631	+	Missense_Mutation	SNP	C	G	G													ttaaaacagaaatgatagatCaagaagagggcatttcttag							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231700631	G	G	231700631	3	3	163	1	0	0	0	0	1	0	0	0	16756	827	29	4	875	4	TSNAX	1	231700631	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	34737223	231700631	17549990	21	135513	580	2									
TSNAX	7257	broad.mit.edu	37	chr1	231700636	231700636	+	Silent	SNP	A	G	G													acagaaatgatagatcaagaAgagggcatttcttagaatct							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231700636	G	G	231700636	2	3	163	1	0	0	0	0	0	0	0	1	16756	69	3	5		5	TSNAX	1	231700636	Silent	SNP	A	TCGA-50-5939-01A-11D-1625-08	5	231700636	17549985	22	135514	580	2									
RYR2	6262	broad.mit.edu	37	chr1	237801625	237801625	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaatgagttttcagccaagGgataactctttgttaatcat	7	7	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237801625	A	A	237801625	1	1	163	0	1	0	0	0	0	0	0	0	13880	1247	43	4		4	RYR2	1	237801625	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	6100989	237801625	11448996	23	135515											
ZNF238	10472	broad.mit.edu	37	chr1	244214608	244214608	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtgcggatctgtggtggaGaaggtatctcattcctctct	13	8	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244214608	A	A	244214608	1	1	163	0	1	0	0	0	0	0	0	0	17916	957	33	4		4	ZNF238	1	244214608	5'Flank	SNP	G	TCGA-50-5939-01A-11D-1625-08	6412983	244214608	5036013	24	135516											
OR2W3	343171	broad.mit.edu	37	chr1	248059023	248059023	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcgtaggcaacaccaccatCatcctggtgtcccggctgga	10	15	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248059023	G	G	248059023	3	3	163	1	0	0	0	0	1	0	0	0	11127	816	29	4	137	4	OR2W3	1	248059023	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	3844415	248059023	1191598	25	135517											
KLF11	8462	broad.mit.edu	37	chr2	10192429	10192429	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgagctgtcacgccaccGcagaactcacacaggggaga	13	12	2	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10192429	A	A	10192429	3	1	163	1	0	0	0	0	1	0	0	0	8410	1087	38	4	1348	4	KLF11	2	10192429	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08		10192429	233006944	26	135518											
APOB	338	broad.mit.edu	37	chr2	21236089	21236089	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccttcatgtggtaacgagCccgaaggctgaaatggtctg	13	9	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21236089	G	G	21236089	3	3	163	1	0	0	0	0	1	0	0	0	787	739	26	4	9552	4	APOB	2	21236089	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	11043660	21236089	221963284	27	135519											
ZNF512	84450	broad.mit.edu	37	chr2	27805813	27805813	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaatcggagggtgactcAtcacgtgactcgctccggcc	14	12	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27805813	T	T	27805813	1	4	163	0	1	0	0	0	0	0	0	0	18083	232	8	5		5	ZNF512	2	27805813	5'Flank	SNP	A	TCGA-50-5939-01A-11D-1625-08	6569724	27805813	215393560	28	135520											
SRBD1	55133	broad.mit.edu	37	chr2	45801904	45801904	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacaaaaacaaaaagtaTacgattggttttaaattcta	5	4	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45801904	C	C	45801904	1	2	163	0	1	0	0	0	0	0	0	0	15251	1421	49	5		5	SRBD1	2	45801904	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	17996091	45801904	197397469	29	135521											
AAK1	22848	broad.mit.edu	37	chr2	69825540	69825540	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgccaaggatctataaatGatgagtcatgtaaaacccat	9	7	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69825540	C	C	69825540	1	2	163	0	1	0	0	0	0	0	0	0	16	1305	45	4		4	AAK1	2	69825540	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	24023636	69825540	173373833	30	135522											
DOK1	1796	broad.mit.edu	37	chr2	74784050	74784050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccccctcggagcacaaagCccctccttgctcccaagccc	6	22	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74784050	T	T	74784050	3	4	163	1	0	0	0	0	1	0	0	0	4736	739	26	4	1273	4	DOK1	2	74784050	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	4958510	74784050	168415323	31	135523											
MAL	4118	broad.mit.edu	37	chr2	95715246	95715246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggggagaggcaaggggcGggggtggaggggacctcagc	25	6	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95715246	A	A	95715246	1	1	163	0	1	0	0	0	0	0	0	0	9291	1131	39	4		4	MAL	2	95715246	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	20931196	95715246	147484127	32	135524											
XIRP2	129446	broad.mit.edu	37	chr2	168106620	168106620	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagtcaagggcatacaagaGaaacaagtcttctctaatac	8	8	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168106620	C	C	168106620	3	2	163	1	0	0	0	0	1	0	0	0	17557	933	33	4	8748	4	XIRP2	2	168106620	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	72391374	168106620	75092753	33	135525											
COL5A2	1290	broad.mit.edu	37	chr2	189950490	189950490	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaggtcctgtaggtccTgcaccaccctacagttgaaa	10	13	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189950490	C	C	189950490	2	2	163	1	0	0	0	0	0	0	0	1	3729	1567	55	5		5	COL5A2	2	189950490	Silent	SNP	T	TCGA-50-5939-01A-11D-1625-08	21843870	189950490	53248883	34	135526											
RPE	6120	broad.mit.edu	37	chr2	210882212	210882212	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaggttcactggttgaggAcccagttcccatctttggat	10	10	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210882212	G	G	210882212	3	3	163	1	0	0	0	0	1	0	0	0	13655	275	10	5	569	5	RPE	2	210882212	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	20931722	210882212	32317161	35	135527											
FN1	2335	broad.mit.edu	37	chr2	216226688	216226688	+	Intron	DEL	T	-	-													cacttgtgctgctaatgcacTtacagtgtttgttctctgat							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216226688	-	-	216226688	6	5	163	0	1	1	0	1	0	0	0	0	6020	1624	56	0		0	FN1	2	216226688	Intron	DEL	T	TCGA-50-5939-01A-11D-1625-08	5344476	216226688	26972685	36	135528											
CTDSP1	58190	broad.mit.edu	37	chr2	219266341	219266342	+	Frame_Shift_Ins	INS	-	A	A													agccggggcatcctccactcINSactcttctgctgtgtctgcc							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219266342	A	A	219266341	7	5	163	1	0	1	1	0	0	0	0	0	4037	838	29	0	128	0	CTDSP1	2	219266341	Frame_Shift_Ins	INS	-	TCGA-50-5939-01A-11D-1625-08	3039653	219266341	23933032	37	135529											
AGAP1	116987	broad.mit.edu	37	chr2	236658921	236658921	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgagtaaggtactggttttCcgtgttgtggggagtgtagg	17	4	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236658921	T	T	236658921	1	4	163	0	1	0	0	0	0	0	0	0	366	870	30	4		4	AGAP1	2	236658921	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	17392580	236658921	6540452	38	135530											
IQCA1	79781	broad.mit.edu	37	chr2	237300824	237300824	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggtcattagtaggaaattGtaaagaagcacaatggttga	11	3	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237300824	A	A	237300824	1	1	163	0	1	0	0	0	0	0	0	0	7872	1392	48	4		4	IQCA1	2	237300824	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	641903	237300824	5898549	39	135531											
GPR35	2859	broad.mit.edu	37	chr2	241569288	241569288	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctcccacatccctgcccaGaggtgggcagagtgggggca	14	14	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241569288	A	A	241569288	1	1	163	0	1	0	0	0	0	0	0	0	6755	957	33	4		4	GPR35	2	241569288	5'UTR	SNP	G	TCGA-50-5939-01A-11D-1625-08	4268464	241569288	1630085	40	135532											
CCDC13	152206	broad.mit.edu	37	chr3	42794271	42794271	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atacacatcaaactcatgctCcaccactaacagcaccaggg	5	15	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42794271	T	T	42794271	1	4	163	0	1	0	0	0	0	0	0	0	2791	870	30	4		4	CCDC13	3	42794271	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08		42794271	155228159	41	135533											
ANO10	55129	broad.mit.edu	37	chr3	43596810	43596810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaggttctgagaatggaCgtttgaagaccctgcacatt	11	8	1	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43596810	T	T	43596810	3	4	163	1	0	0	0	0	1	0	0	0	696	536	19	4	370	4	ANO10	3	43596810	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	802539	43596810	154425620	42	135534											
PTH1R	5745	broad.mit.edu	37	chr3	46937261	46937261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaagggatggacatctgCgtccacatcagggaagccca	12	11	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46937261	A	A	46937261	3	1	163	1	0	0	0	0	1	0	0	0	12864	768	27	3	225	3	PTH1R	3	46937261	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	3340451	46937261	151085169	43	135535											
FAM3D	131177	broad.mit.edu	37	chr3	58629398	58629398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaactcaccattcaccaGggcgatgtttaggcctctgc	9	13	3	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58629398	T	T	58629398	3	4	163	1	0	0	0	0	1	0	0	0	5610	991	35	2	381	2	FAM3D	3	58629398	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	11692137	58629398	139393032	44	135536											
ABI3BP	25890	broad.mit.edu	37	chr3	100569436	100569436	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgaaatggtcatttggaaGaaaggcattcacatgatttt	9	4	2	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100569436	A	A	100569436	1	1	163	0	1	0	0	0	0	0	0	0	91	957	33	4		4	ABI3BP	3	100569436	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	41940038	100569436	97452994	45	135537											
ZBBX	79740	broad.mit.edu	37	chr3	167046054	167046054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaacttagaatattttTaagttgtgcttatttatatg	5	2	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167046054	A	A	167046054	1	1	163	0	1	0	0	0	0	0	0	0	17643	1769	61	5		5	ZBBX	3	167046054	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	66476618	167046054	30976376	46	135538											
KCNMB2	10242	broad.mit.edu	37	chr3	178543325	178543325	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactgacctgctctctagggGcatgctgattaactaaactt	8	10	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178543325	C	C	178543325	1	2	163	0	1	0	0	0	0	0	0	0	8145	1218	42	4		4	KCNMB2	3	178543325	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	11497271	178543325	19479105	47	135539											
HAUS3	79441	broad.mit.edu	37	chr4	2242226	2242226	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttagaattccttgactctGcttcagctttttagtggctt	7	8	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2242226	A	A	2242226	4	1	163	1	0	0	0	0	0	1	0	0	7033	1328	46	4	1379	4	HAUS3	4	2242226	Nonsense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08		2242226	188912050	48	135540											
EVC	2121	broad.mit.edu	37	chr4	5735281	5735281	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcagtggaaacagagccGctgtgaggtgggggaaagcg	17	7	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5735281	A	A	5735281	1	1	163	0	1	0	0	0	0	0	0	0	5327	1102	38	4		4	EVC	4	5735281	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	3493055	5735281	185418995	49	135541											
ENAM	10117	broad.mit.edu	37	chr4	71508556	71508556	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagttaataaatcaaattaTaaactgcctcactctgaggg	7	7	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71508556	A	A	71508556	4	1	163	1	0	0	0	0	0	1	0	0	5154	1413	49	5	1443	5	ENAM	4	71508556	Nonsense_Mutation	SNP	T	TCGA-50-5939-01A-11D-1625-08	65773275	71508556	119645720	50	135542											
KLHL8	57563	broad.mit.edu	37	chr4	88106383	88106383	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcacttcatttctgtgtgaAatcttatttcagctcctacc	4	11	5	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88106383	C	C	88106383	1	2	163	0	1	0	0	0	0	0	0	0	8466	29	1	5		5	KLHL8	4	88106383	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	16597827	88106383	103047893	51	135543											
NPY5R	4889	broad.mit.edu	37	chr4	164272190	164272190	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgaagaaaatgagatgatCaacttaactcttcatccatc	5	9	3	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164272190	T	T	164272190	2	4	163	1	0	0	0	0	0	0	0	1	10705	816	29	4		4	NPY5R	4	164272190	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	76165807	164272190	26882086	52	135544											
ZDHHC11	79844	broad.mit.edu	37	chr5	825470	825470	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcaccactgctgtgggGcacacatgtctcagaaactt	10	12	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	825470	A	A	825470	1	1	163	0	1	0	0	0	0	0	0	0	17727	1218	42	4		4	ZDHHC11	5	825470	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08		825470	180089790	53	135545											
MARCH11	441061	broad.mit.edu	37	chr5	16067562	16067562	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagggtggtccacactgCatcatcttatgcttttgtca	10	10	3	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16067562	T	T	16067562	1	4	163	0	1	0	0	0	0	0	0	0	9392	725	25	4		4	MARCH11	5	16067562	3'UTR	SNP	C	TCGA-50-5939-01A-11D-1625-08	15242092	16067562	164847698	54	135546											
CDH18	1016	broad.mit.edu	37	chr5	19543933	19543933	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaaatttcagtatgtcttCttgtacaagtgacatctttt	7	6	4	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19543933	G	G	19543933	1	3	163	0	1	0	0	0	0	0	0	0	3133	928	32	4		4	CDH18	5	19543933	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	3476371	19543933	161371327	55	135547											
POLK	51426	broad.mit.edu	37	chr5	74892989	74892989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaatcaacccaaagaaaGctccagaagtactggtaagt	8	8	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74892989	T	T	74892989	3	4	163	1	0	0	0	0	1	0	0	0	12299	971	34	3	2517	3	POLK	5	74892989	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	55349056	74892989	106022271	56	135548											
CRHBP	1393	broad.mit.edu	37	chr5	76259380	76259380	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacattggaaggtgagtttcGccaaaaaagccttcaatttt	8	7	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76259380	A	A	76259380	1	1	163	0	1	0	0	0	0	0	0	0	3902	1102	38	4		4	CRHBP	5	76259380	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	1366391	76259380	104655880	57	135549											
TTC37	9652	broad.mit.edu	37	chr5	94878980	94878980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctagttcagctgcagcaaCgccaataaaaacccaggcat	7	12	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94878980	A	A	94878980	3	1	163	1	0	0	0	0	1	0	0	0	16831	536	19	3	4708	3	TTC37	5	94878980	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	18619600	94878980	86036280	58	135550											
FBXL17	64839	broad.mit.edu	37	chr5	107700310	107700310	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatctaaacaaatattcatTaataggtaaaaaagatgatt	4	3	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107700310	C	C	107700310	1	2	163	0	1	0	0	0	0	0	0	0	5770	1769	61	5		5	FBXL17	5	107700310	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	12821330	107700310	73214950	59	135551											
CAMK4	814	broad.mit.edu	37	chr5	110809089	110809089	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatcacctacatcttgtaaGtgaagaaaagcaatatttat	5	6	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110809089	C	C	110809089	1	2	163	0	1	0	0	0	0	0	0	0	2631	1044	36	4		4	CAMK4	5	110809089	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	3108779	110809089	70106171	60	135552											
MYOT	9499	broad.mit.edu	37	chr5	137206504	137206504	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagcaaagattttctgcctCctcaacactgagctctcaca	6	13	3	3	rs121908457		TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137206504	T	T	137206504	3	4	163	1	0	0	0	0	1	0	0	0	10188	855	30	4	166	4	MYOT	5	137206504	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	26397415	137206504	43708756	61	135553											
CTNNA1	1495	broad.mit.edu	37	chr5	138269764	138269764	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagcgagttcaaagctAtggacagcatctaagtctgc	9	12	4	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138269764	G	G	138269764	3	3	163	1	0	0	0	0	1	0	0	0	4046	449	16	5	2773	5	CTNNA1	5	138269764	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	1063260	138269764	42645496	62	135554											
SIL1	64374	broad.mit.edu	37	chr5	138287576	138287576	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggaccttggggttgctGgggaagaagcacaggacagc	16	9	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138287576	A	A	138287576	1	1	163	0	1	0	0	0	0	0	0	0	14434	1363	47	4		4	SIL1	5	138287576	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	17812	138287576	42627684	63	135555											
UBE2D2	7322	broad.mit.edu	37	chr5	138994420	138994420	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatactaataaactagtttAcagaaagtttcctttctttc	3	7	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138994420	G	G	138994420	1	3	163	0	1	0	0	0	0	0	0	0	16975	406	14	5		5	UBE2D2	5	138994420	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	706844	138994420	41920840	64	135556											
PCDHA1	56147	broad.mit.edu	37	chr5	140167508	140167508	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggatgcgggcgtgccgcctCtgggcagcaacgtgacgctg	18	12	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140167508	G	G	140167508	3	3	163	1	0	0	0	0	1	0	0	0	11613	912	32	4	1635	4	PCDHA1	5	140167508	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	1173088	140167508	40747752	65	135557											
ABLIM3	22885	broad.mit.edu	37	chr5	148626096	148626096	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggaggatgattttgaccGcagcatgcacaaggtgggca	15	7	0	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148626096	A	A	148626096	3	1	163	1	0	0	0	0	1	0	0	0	96	1087	38	4	1600	4	ABLIM3	5	148626096	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	8458588	148626096	32289164	66	135558											
NMUR2	56923	broad.mit.edu	37	chr5	151775143	151775143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaacactaagaccaagaCaactgaaaatggatgataaa	7	7	0	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151775143	A	A	151775143	3	1	163	1	0	0	0	0	1	0	0	0	10602	478	17	3	441	3	NMUR2	5	151775143	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	3149047	151775143	29140117	67	135559											
LSM11	134353	broad.mit.edu	37	chr5	157181030	157181030	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcacttactgatgtggatGagacctaccgaaaacctgtc	10	10	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157181030	A	A	157181030	3	1	163	1	0	0	0	0	1	0	0	0	9139	1291	45	4	617	4	LSM11	5	157181030	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	5405887	157181030	23734230	68	135560											
ATP10B	23120	broad.mit.edu	37	chr5	160114890	160114890	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttctgttgccagggtatctCctggagacctcttcccaatc	9	13	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160114890	T	T	160114890	2	4	163	1	0	0	0	0	0	0	0	1	1121	854	30	4		4	ATP10B	5	160114890	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	2933860	160114890	20800370	69	135561											
DOCK2	1794	broad.mit.edu	37	chr5	169186588	169186588	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaggcttccatcaatatTgtaatgtccaggatgcagaa	9	8	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169186588	C	C	169186588	1	2	163	0	1	0	0	0	0	0	0	0	4727	1827	63	5		5	DOCK2	5	169186588	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	9071698	169186588	11728672	70	135562											
DDX41	51428	broad.mit.edu	37	chr5	176938674	176938674	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcagccaggaccagcctGgcccatcccaggccagctga	12	17	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176938674	A	A	176938674	1	1	163	0	1	0	0	0	0	0	0	0	4394	1363	47	4		4	DDX41	5	176938674	3'UTR	SNP	G	TCGA-50-5939-01A-11D-1625-08	7752086	176938674	3976586	71	135563											
ATXN1	6310	broad.mit.edu	37	chr6	16327538	16327538	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcggctgaggacggggccCcgtaccgccggctcttctcc	15	16	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16327538	T	T	16327538	3	4	163	1	0	0	0	0	1	0	0	0	1213	623	22	4	1451	4	ATXN1	6	16327538	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08		16327538	154787529	72	135564											
SKIV2L	6499	broad.mit.edu	37	chr6	31926915	31926915	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccggggcggggcttacttCgcagcgactacttgccgcac	13	14	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31926915	T	T	31926915	1	4	163	0	1	0	0	0	0	0	0	0	14472	899	31	4		4	SKIV2L	6	31926915	5'UTR	SNP	C	TCGA-50-5939-01A-11D-1625-08	15599377	31926915	139188152	73	135565											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34825625	34825625	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggagcagttcaaagctatCtacaagctggaagattcaag	10	7	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34825625	G	G	34825625	3	3	163	1	0	0	0	0	1	0	0	0	17094	903	32	4	1748	4	UHRF1BP1	6	34825625	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	2898710	34825625	136289442	74	135566											
SESN1	27244	broad.mit.edu	37	chr6	109315585	109315585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggacatatttagattgatGctttaaaagttatttaaatt	6	2	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109315585	A	A	109315585	1	1	163	0	1	0	0	0	0	0	0	0	14237	1334	46	4		4	SESN1	6	109315585	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	74489960	109315585	61799482	75	135567											
MICAL1	64780	broad.mit.edu	37	chr6	109768517	109768517	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaaacgcccctgccctGccctccccgggcctctgcct	8	22	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109768517	C	C	109768517	1	2	163	0	1	0	0	0	0	0	0	0	9662	1334	46	4		4	MICAL1	6	109768517	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	452932	109768517	61346550	76	135568											
MAP3K5	4217	broad.mit.edu	37	chr6	136977668	136977671	+	Intron	DEL	TAAT	-	-													tgttcccatgtatcccagtcTaattctgtaaatgtaattta							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136977671	-	-	136977668	6	5	163	0	1	1	0	1	0	0	0	0	9345	1537	53	0		0	MAP3K5	6	136977668	Intron	DEL	TAAT	TCGA-50-5939-01A-11D-1625-08	27209151	136977668	34137399	77	135569											
PLG	5340	broad.mit.edu	37	chr6	161127337	161127337	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagtaaacagaaagttttAtttggttaatgctaaccaaa	6	6	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161127337	C	C	161127337	1	2	163	0	1	0	0	0	0	0	0	0	12181	464	16	5		5	PLG	6	161127337	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	24149669	161127337	9987730	78	135570											
PDE10A	10846	broad.mit.edu	37	chr6	165829629	165829629	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaggtttcagctgagtggGacatcacagaagaaatcaat	11	6	3	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165829629	T	T	165829629	1	4	163	0	1	0	0	0	0	0	0	0	11724	1189	41	3		3	PDE10A	6	165829629	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	4702292	165829629	5285438	79	135571											
CCDC146	57639	broad.mit.edu	37	chr7	76924258	76924258	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacccacaggtgaaaaatgtGagcataatacttctaatatt	6	7	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76924258	A	A	76924258	1	1	163	0	1	0	0	0	0	0	0	0	2806	1305	45	4		4	CCDC146	7	76924258	3'UTR	SNP	G	TCGA-50-5939-01A-11D-1625-08		76924258	82214405	80	135572											
PCLO	27445	broad.mit.edu	37	chr7	82451802	82451802	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgaggaatttatttgcGtcttttacttggttgaatgc	10	5	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82451802	A	A	82451802	1	1	163	0	1	0	0	0	0	0	0	0	11677	1145	40	4		4	PCLO	7	82451802	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	5527544	82451802	76686861	81	135573											
SEMA3E	9723	broad.mit.edu	37	chr7	83032095	83032095	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccctcgaaaaatattactGaaaaatacaaaaaagataat	4	6	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83032095	A	A	83032095	1	1	163	0	1	0	0	0	0	0	0	0	14141	1305	45	4		4	SEMA3E	7	83032095	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	580293	83032095	76106568	82	135574											
ABCB1	5243	broad.mit.edu	37	chr7	87133549	87133552	+	3'UTR	DEL	CAGT	-	-													aaagtatttaacatctcataCagtcagagttcactggcgct							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87133552	-	-	87133549	6	5	163	0	1	1	0	1	0	0	0	0	40	493	17	0		0	ABCB1	7	87133549	3'UTR	DEL	CAGT	TCGA-50-5939-01A-11D-1625-08	4101454	87133549	72005114	83	135575											
KCND2	3751	broad.mit.edu	37	chr7	119914843	119914843	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtgagtggcacccgcttcCagacgtggcaggacaccctg	13	13	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119914843	G	G	119914843	3	3	163	1	0	0	0	0	1	0	0	0	8089	595	21	4	159	4	KCND2	7	119914843	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	32781294	119914843	39223820	84	135576											
CRYGN	155051	broad.mit.edu	37	chr7	151135071	151135071	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactcagccttcggtggacgGgcccactcaccattcctaca	9	16	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151135071	A	A	151135071	1	1	163	0	1	0	0	0	0	0	0	0	3950	1247	43	4		4	CRYGN	7	151135071	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	31220228	151135071	8003592	85	135577											
MLL3	58508	broad.mit.edu	37	chr7	151849821	151849821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaaatggtacattaggCtgcttcagccggtaagagct	14	7	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151849821	A	A	151849821	3	1	163	1	0	0	0	0	1	0	0	0	9715	796	28	3	2284	3	MLL3	7	151849821	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	714750	151849821	7288842	86	135578											
MTMR9	66036	broad.mit.edu	37	chr8	11174186	11174186	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccatcttccccctaggctgGtcacccattccagcagcgct	7	18	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11174186	C	C	11174186	3	2	163	1	0	0	0	0	1	0	0	0	10044	1261	44	4	1148	4	MTMR9	8	11174186	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08		11174186	135189836	87	135579											
BAG4	9530	broad.mit.edu	37	chr8	38067484	38067484	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgatgttgatgcattcccAttaaaacagctcttttcctc	5	10	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38067484	G	G	38067484	1	3	163	0	1	0	0	0	0	0	0	0	1294	232	8	5		5	BAG4	8	38067484	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	26893298	38067484	108296538	88	135580											
RAD54B	25788	broad.mit.edu	37	chr8	95416341	95416341	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attcataaaggaatatgattCcttctttctgatgtggtcga	8	6	3	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95416341	T	T	95416341	3	4	163	1	0	0	0	0	1	0	0	0	13100	855	30	4	1864	4	RAD54B	8	95416341	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	57348857	95416341	50947681	89	135581											
UBR5	51366	broad.mit.edu	37	chr8	103298089	103298089	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattatatatacttacgtaAatctaaatggtcaattgtgg	8	4	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103298089	T	T	103298089	1	4	163	0	1	0	0	0	0	0	0	0	17031	29	1	5		5	UBR5	8	103298089	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	7881748	103298089	43065933	90	135582											
FZD6	8323	broad.mit.edu	37	chr8	104337734	104337734	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtccttatcaggtaaaagCtatcacttggattatgtctc	7	8	3	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104337734	G	G	104337734	1	3	163	0	1	0	0	0	0	0	0	0	6194	812	28	4		4	FZD6	8	104337734	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	1039645	104337734	42026288	91	135583											
TRIB1	10221	broad.mit.edu	37	chr8	126445604	126445604	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaaatcaggccttacatcCagctgccatcgcacagcaac	6	15	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126445604	T	T	126445604	4	4	163	1	0	0	0	0	0	1	0	0	16606	595	21	4	412	4	TRIB1	8	126445604	Nonsense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	22107870	126445604	19918418	92	135584											
TRIB1	10221	broad.mit.edu	37	chr8	126448609	126448609	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctactgcacccctggtttGagtccgtcttggaacccggg	11	14	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126448609	T	T	126448609	4	4	163	1	0	0	0	0	0	1	0	0	16606	1291	45	3	1025	3	TRIB1	8	126448609	Nonsense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	3005	126448609	19915413	93	135585											
PPP1R16A	84988	broad.mit.edu	37	chr8	145724260	145724260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggcagggtgggggctgGcccccgtgctctggtcgctc	19	12	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145724260	T	T	145724260	1	4	163	0	1	0	0	0	0	0	0	0	12466	1218	42	3		3	PPP1R16A	8	145724260	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	19275651	145724260	639762	94	135586											
KIAA0020	9933	broad.mit.edu	37	chr9	2811463	2811463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatcccagaatgtcagaCaccaacacacacgcagactt	7	14	1	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2811463	A	A	2811463	2	1	163	1	0	0	0	0	0	0	0	1	8222	465	17	3		3	KIAA0020	9	2811463	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08		2811463	138401968	95	135587											
IPPK	64768	broad.mit.edu	37	chr9	95432294	95432294	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggcgcagccctggcgcctCgcgggctaggactcggggac	17	15	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95432294	T	T	95432294	1	4	163	0	1	0	0	0	0	0	0	0	7871	899	31	4		4	IPPK	9	95432294	5'UTR	SNP	C	TCGA-50-5939-01A-11D-1625-08	92620831	95432294	45781137	96	135588											
KIAA1529	57653	broad.mit.edu	37	chr9	100085103	100085103	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggactgatttgctttgttttCtgcccatggagacacctacc	9	11	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100085103	T	T	100085103	1	4	163	0	1	0	0	0	0	0	0	0	8310	928	32	4		4	KIAA1529	9	100085103	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	4652809	100085103	41128328	97	135589											
GAPVD1	26130	broad.mit.edu	37	chr9	128025821	128025821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgttgtttttttttttttGgttgtaagtttattcaatgc	7	3	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128025821	T	T	128025821	1	4	163	0	1	0	0	0	0	0	0	0	6301	1363	47	2		2	GAPVD1	9	128025821	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	27940718	128025821	13187610	98	135590											
SH2D3C	10044	broad.mit.edu	37	chr9	130536699	130536699	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatcgtctcagagtgaaggAccgagggaggttggagagac	18	6	1	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130536699	G	G	130536699	3	3	163	1	0	0	0	0	1	0	0	0	14347	275	10	5	2674	5	SH2D3C	9	130536699	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	2510878	130536699	10676732	99	135591											
DNM1	1759	broad.mit.edu	37	chr9	131001628	131001628	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattatggatactaacctccTatatgtgctgcaagtacttt	6	8	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131001628	G	G	131001628	1	3	163	0	1	0	0	0	0	0	0	0	4710	1537	53	5		5	DNM1	9	131001628	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	464929	131001628	10211803	100	135592											
PRDM12	59335	broad.mit.edu	37	chr9	133542191	133542191	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctcatgtgggaggtacgCgcgggctggggcagaggggc	20	9	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133542191	G	G	133542191	1	3	163	0	1	0	0	0	0	0	0	0	12559	783	27	4		4	PRDM12	9	133542191	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	2540563	133542191	7671240	101	135593											
DIP2C	22982	broad.mit.edu	37	chr10	327359	327359	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaaaaacgacccccaagtGagacagggatgcaaaggaag	11	8	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	327359	A	A	327359	1	1	163	0	1	0	0	0	0	0	0	0	4569	1305	45	4		4	DIP2C	10	327359	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08		327359	135207388	102	135594											
AKR1E2	83592	broad.mit.edu	37	chr10	4877971	4877971	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagcaacatggttattccCagtgacacggacttcctgga	11	10	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4877971	G	G	4877971	2	3	163	1	0	0	0	0	0	0	0	1	474	581	21	4		4	AKR1E2	10	4877971	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	4550612	4877971	130656776	103	135595											
CUBN	8029	broad.mit.edu	37	chr10	17061799	17061799	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcttggccaaatagcaacTgcaaatacaactgagatcag	7	9	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17061799	A	A	17061799	1	1	163	0	1	0	0	0	0	0	0	0	4084	1595	55	5		5	CUBN	10	17061799	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	12183828	17061799	118472948	104	135596											
ANKRD26	22852	broad.mit.edu	37	chr10	27329051	27329051	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagtgattttttttaagttCtaataatctttcacatgaaa	4	5	3	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27329051	T	T	27329051	3	4	163	1	0	0	0	0	1	0	0	0	654	922	32	4	2970	4	ANKRD26	10	27329051	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	10267252	27329051	108205696	105	135597											
LRRTM3	347731	broad.mit.edu	37	chr10	68686763	68686763	+	Frame_Shift_Del	DEL	C	-	-													actgacaatgctttcttctgCcgaacgaggatgccctaagg							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68686763	-	-	68686763	7	5	163	1	0	1	0	1	0	0	0	0	9128	739	26	0	95	0	LRRTM3	10	68686763	Frame_Shift_Del	DEL	C	TCGA-50-5939-01A-11D-1625-08	41357712	68686763	66847984	106	135598											
GRID1	2894	broad.mit.edu	37	chr10	87379854	87379854	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtgtcagctttgattggtGagccatcttgatggtgggat	14	6	2	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87379854	A	A	87379854	1	1	163	0	1	0	0	0	0	0	0	0	6837	1305	45	4		4	GRID1	10	87379854	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	18693091	87379854	48154893	107	135599											
TMEM20	159371	broad.mit.edu	37	chr10	95660511	95660511	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcatttgaatttacagaaCtgggtttataggcccaaaag	8	7	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95660511	T	T	95660511	3	4	163	1	0	0	0	0	1	0	0	0	16245	565	20	4	372	4	TMEM20	10	95660511	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	8280657	95660511	39874236	108	135600											
PDZD7	79955	broad.mit.edu	37	chr10	102782064	102782064	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tataggtggacgatgcgccgGacaccatcttctgagctggt	13	10	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102782064	A	A	102782064	2	1	163	1	0	0	0	0	0	0	0	1	11798	1161	41	4		4	PDZD7	10	102782064	Silent	SNP	G	TCGA-50-5939-01A-11D-1625-08	7121553	102782064	32752683	109	135601											
SORCS3	22986	broad.mit.edu	37	chr10	106907571	106907571	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaggtatgtagccaaaattCtccttcccttgggtctgtct	9	10	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106907571	T	T	106907571	1	4	163	0	1	0	0	0	0	0	0	0	15046	928	32	4		4	SORCS3	10	106907571	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	4125507	106907571	28627176	110	135602											
WDR11	55717	broad.mit.edu	37	chr10	122622304	122622304	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccccatccaagcctccctCaggccctgggaaaaaagttt	7	16	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122622304	T	T	122622304	3	4	163	1	0	0	0	0	1	0	0	0	17400	838	29	4	602	4	WDR11	10	122622304	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	15714733	122622304	12912443	111	135603											
C10orf90	118611	broad.mit.edu	37	chr10	128193152	128193152	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcgggaaccttcagcCgcaccacggagctgtttctg	13	14	2	0	rs148312578		TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128193152	T	T	128193152	3	4	163	1	0	0	0	0	1	0	0	0	1634	652	23	4	1510	4	C10orf90	10	128193152	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	5570848	128193152	7341595	112	135604											
RPL27A	6157	broad.mit.edu	37	chr11	8704740	8704740	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccttaccaccaagcttttTccacacagccatccagactg	6	16	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8704740	C	C	8704740	1	2	163	0	1	0	0	0	0	0	0	0	13687	1798	62	5		5	RPL27A	11	8704740	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08		8704740	126301776	113	135605											
ASCL3	56676	broad.mit.edu	37	chr11	8959615	8959615	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggaaagtgaccatgggctCcagatagaaggacctggtca	14	8	1	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8959615	A	A	8959615	4	1	163	1	0	0	0	0	0	1	0	0	1039	864	30	3	455	3	ASCL3	11	8959615	Nonsense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	254875	8959615	126046901	114	135606											
RAG1	5896	broad.mit.edu	37	chr11	36596221	36596221	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagctgatgagctggaggCcatcatgcagggaaagggct	16	8	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36596221	T	T	36596221	3	4	163	1	0	0	0	0	1	0	0	0	13111	739	26	4	1369	4	RAG1	11	36596221	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	27636606	36596221	98410295	115	135607											
LRRC4C	57689	broad.mit.edu	37	chr11	40136625	40136625	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatttaacgtaccatcactGagcacagctatccgcacttt	5	12	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40136625	T	T	40136625	2	4	163	1	0	0	0	0	0	0	0	1	9095	1277	45	3		3	LRRC4C	11	40136625	Silent	SNP	G	TCGA-50-5939-01A-11D-1625-08	3540404	40136625	94869891	116	135608											
OR8H3	390152	broad.mit.edu	37	chr11	55890333	55890333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctttgtcaatgtggtttCcatgagcagattgcatttct	8	9	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55890333	A	A	55890333	3	1	163	1	0	0	0	0	1	0	0	0	11333	855	30	3	487	3	OR8H3	11	55890333	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	15753708	55890333	79116183	117	135609											
OR5A1	219982	broad.mit.edu	37	chr11	59211414	59211414	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactctgctgtttgggacagCccttttcgtgtacttgcgac	11	11	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59211414	T	T	59211414	3	4	163	1	0	0	0	0	1	0	0	0	11233	739	26	4	775	4	OR5A1	11	59211414	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	3321081	59211414	75795102	118	135610											
PACS1	55690	broad.mit.edu	37	chr11	65987365	65987365	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacactctgtattgccactgAgagtcaggattctaggatta	9	8	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65987365	G	G	65987365	1	3	163	0	1	0	0	0	0	0	0	0	11466	319	11	5		5	PACS1	11	65987365	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	6775951	65987365	69019151	119	135611											
ARAP1	116985	broad.mit.edu	37	chr11	72412759	72412759	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtagaggaagccactgTggctcacggtcggcaggaca	14	10	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72412759	G	G	72412759	3	3	163	1	0	0	0	0	1	0	0	0	840	1696	59	5	2195	5	ARAP1	11	72412759	Missense_Mutation	SNP	T	TCGA-50-5939-01A-11D-1625-08	6425394	72412759	62593757	120	135612											
P2RY6	5031	broad.mit.edu	37	chr11	73007896	73007896	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctatgccaacctgcaCggcagcatcctcttcctcac	5	18	4	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73007896	T	T	73007896	2	4	163	1	0	0	0	0	0	0	0	1	11448	535	19	4		4	P2RY6	11	73007896	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	595137	73007896	61998620	121	135613											
C11orf82	220042	broad.mit.edu	37	chr11	82625917	82625917	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagtaaagtctgtaagtgtGagagaggaaatacaaatgca	11	3	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82625917	A	A	82625917	1	1	163	0	1	0	0	0	0	0	0	0	1677	1305	45	4		4	C11orf82	11	82625917	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	9618021	82625917	52380599	122	135614											
GRM5	2915	broad.mit.edu	37	chr11	88323703	88323703	+	Intron	DEL	C	-	-													agtaacgcttggggatgtgaCccccctctcccacgtctgca							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88323703	-	-	88323703	6	5	163	0	1	1	0	1	0	0	0	0	6866	522	18	0		0	GRM5	11	88323703	Intron	DEL	C	TCGA-50-5939-01A-11D-1625-08	5697786	88323703	46682813	123	135615											
USP28	57646	broad.mit.edu	37	chr11	113724895	113724895	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctatatgtgctttaatttgGgaatagaaatagcttgaact	8	5	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113724895	A	A	113724895	1	1	163	0	1	0	0	0	0	0	0	0	17185	1247	43	4		4	USP28	11	113724895	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	25401192	113724895	21281621	124	135616											
IL10RA	3587	broad.mit.edu	37	chr11	117866260	117866260	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctatgtccagaatcaccgtGccccatggtgacaggccaca	9	15	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117866260	A	A	117866260	1	1	163	0	1	0	0	0	0	0	0	0	7690	1334	46	4		4	IL10RA	11	117866260	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	4141365	117866260	17140256	125	135617											
IFFO1	25900	broad.mit.edu	37	chr12	6664536	6664536	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccatccgggtgcacccaCgacaagccaggcccttgcac	9	19	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6664536	A	A	6664536	2	1	163	1	0	0	0	0	0	0	0	1	7580	523	19	3		3	IFFO1	12	6664536	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08		6664536	127187359	126	135618											
SYT10	341359	broad.mit.edu	37	chr12	33578966	33578966	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctcctgtttctcttttctCccaactaaagtttttctctc	2	13	4	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33578966	A	A	33578966	1	1	163	0	1	0	0	0	0	0	0	0	15585	870	30	3		3	SYT10	12	33578966	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	26914430	33578966	100272929	127	135619											
KRT1	3848	broad.mit.edu	37	chr12	53074043	53074043	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtgtggagctgctggtggtCctgcgctggtagttgatgat	17	7	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53074043	T	T	53074043	2	4	163	1	0	0	0	0	0	0	0	1	8518	854	30	4		4	KRT1	12	53074043	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	19495077	53074043	80777852	128	135620											
HNRNPA1	3178	broad.mit.edu	37	chr12	54675629	54675629	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggctttgggtttgtcacAtatgccactgtggaggaggt	16	6	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54675629	G	G	54675629	2	3	163	1	0	0	0	0	0	0	0	1	7324	204	8	5		5	HNRNPA1	12	54675629	Silent	SNP	A	TCGA-50-5939-01A-11D-1625-08	1601586	54675629	79176266	129	135621											
NFE2	4778	broad.mit.edu	37	chr12	54686563	54686571	+	In_Frame_Del	DEL	CGTAGGAAA	-	-													ggcaagttgacaatcttgtcCgtaggaaaaggaatcttcat							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54686571	-	-	54686563	7	5	163	1	0	1	0	1	0	0	0	0	10461	639	23	0	408	0	NFE2	12	54686563	In_Frame_Del	DEL	CGTAGGAAA	TCGA-50-5939-01A-11D-1625-08	10934	54686563	79165332	130	135622											
RPL41	6171	broad.mit.edu	37	chr12	56510448	56510448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgccatttttttgggtgaGtgttttttggttcctgcgtt	12	6	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56510448	T	T	56510448	1	4	163	0	1	0	0	0	0	0	0	0	13707	1044	36	3		3	RPL41	12	56510448	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	1823885	56510448	77341447	131	135623											
COQ10A	93058	broad.mit.edu	37	chr12	56664024	56664024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatgttgctgcctttgagCgtcgggcagccaccaagttt	12	10	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56664024	T	T	56664024	3	4	163	1	0	0	0	0	1	0	0	0	3775	768	27	4	727	4	COQ10A	12	56664024	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	153576	56664024	77187871	132	135624											
MBD6	114785	broad.mit.edu	37	chr12	57919411	57919411	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacctcctccacctgctatCagcctcaatgctccctcata	3	20	3	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57919411	T	T	57919411	2	4	163	1	0	0	0	0	0	0	0	1	9441	816	29	4		4	MBD6	12	57919411	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	1255387	57919411	75932484	133	135625											
MARCH9	92979	broad.mit.edu	37	chr12	58152340	58152340	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggatttcttattcctattGctcaggcctcatcatccatg	6	12	4	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58152340	A	A	58152340	1	1	163	0	1	0	0	0	0	0	0	0	9400	1334	46	4		4	MARCH9	12	58152340	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	232929	58152340	75699555	134	135626											
HELB	92797	broad.mit.edu	37	chr12	66725430	66725430	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagcaaaatttttatggtagGagtgatgtttccatgttccc	9	6	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66725430	T	T	66725430	1	4	163	0	1	0	0	0	0	0	0	0	7112	1189	41	3		3	HELB	12	66725430	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	8573090	66725430	67126465	135	135627											
NAV3	89795	broad.mit.edu	37	chr12	78516195	78516196	+	Missense_Mutation	DNP	AC	TG	TG													gaacgggtagtgtgagatctActctctcagaaaggtgagct							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	78516196	TG	TG	78516195	3	4	163	1	0	0	0	0	1	0	0	0	10279	391	14	5	4287	5	NAV3	12	78516195	Missense_Mutation	DNP	AC	TCGA-50-5939-01A-11D-1625-08	11790765	78516195	55335700	136	135628											
LRRIQ1	84125	broad.mit.edu	37	chr12	85449827	85449827	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatatttcaaatgataAgggtgatatagccaaaaatc	8	4	1	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85449827	C	C	85449827	3	2	163	1	0	0	0	0	1	0	0	0	9116	72	3	5	1282	5	LRRIQ1	12	85449827	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	6933632	85449827	48402068	137	135629											
C12orf48	55010	broad.mit.edu	37	chr12	102542294	102542294	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattaaaatttagctctatTtattttgaattatagtatca	3	3	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102542294	G	G	102542294	1	3	163	0	1	0	0	0	0	0	0	0	1705	1856	64	5		5	C12orf48	12	102542294	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	17092467	102542294	31309601	138	135630											
CMKLR1	1240	broad.mit.edu	37	chr12	108686166	108686166	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtggacaggctgaagtTgttgaagcaggatattttcc	14	5	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108686166	C	C	108686166	3	2	163	1	0	0	0	0	1	0	0	0	3611	1812	63	5	551	5	CMKLR1	12	108686166	Missense_Mutation	SNP	T	TCGA-50-5939-01A-11D-1625-08	6143872	108686166	25165729	139	135631			1	105		3	3	64	T		7.668027e-08
CMKLR1	1240	broad.mit.edu	37	chr12	108686195	108686195	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatattttcccatgcaggTtggctgtgtcccggaagacg	13	9	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108686195	G	G	108686195	3	3	163	1	0	0	0	0	1	0	0	0	3611	1725	60	5	580	5	CMKLR1	12	108686195	Missense_Mutation	SNP	T	TCGA-50-5939-01A-11D-1625-08	29	108686195	25165700	140	135632			1	105		3	3	64	T		7.668027e-08
CMKLR1	1240	broad.mit.edu	37	chr12	108686229	108686229	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagacgagagatggggaacTcaagaagaaagccaggaccc	14	8	1	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108686229	G	G	108686229	3	3	163	1	0	0	0	0	1	0	0	0	3611	1551	54	5	614	5	CMKLR1	12	108686229	Missense_Mutation	SNP	T	TCGA-50-5939-01A-11D-1625-08	34	108686229	25165666	141	135633			1	105		3	3	64	T		7.668027e-08
RPH3A	22895	broad.mit.edu	37	chr12	113319638	113319638	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgttaagctgcacctcctgcCgggagccagcaaggtaccat	11	14	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113319638	G	G	113319638	3	3	163	1	0	0	0	0	1	0	0	0	13662	652	23	4	1363	4	RPH3A	12	113319638	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	4633409	113319638	20532257	142	135634											
MYO16	23026	broad.mit.edu	37	chr13	109496821	109496821	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaccccatgatgagcGgttccaccaaacccgagcag	9	14	0	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109496821	A	A	109496821	3	1	163	1	0	0	0	0	1	0	0	0	10158	1116	39	4	1196	4	MYO16	13	109496821	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08		109496821	5673057	143	135635											
PSME2	5721	broad.mit.edu	37	chr14	24614414	24614414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccagtagtcagtgtgCcatcaccccttccctagtca	6	16	4	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24614414	A	A	24614414	1	1	163	0	1	0	0	0	0	0	0	0	12813	754	26	3		3	PSME2	14	24614414	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08		24614414	82735126	144	135636											
CTAGE5	4253	broad.mit.edu	37	chr14	39772754	39772755	+	Intron	INS	-	A	A													gctattagatacttaaaaagINSaataaggaggaagaaagaga							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39772755	A	A	39772754	6	5	163	0	1	1	1	0	0	0	0	0	4028	957	33	0		0	CTAGE5	14	39772754	Intron	INS	-	TCGA-50-5939-01A-11D-1625-08	15158340	39772754	67576786	145	135637											
VTI1B	10490	broad.mit.edu	37	chr14	68129276	68129276	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagatagataagtttcaAatgcttattactgtttccac	6	6	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68129276	T	T	68129276	1	4	163	0	1	0	0	0	0	0	0	0	17363	29	1	5		5	VTI1B	14	68129276	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	28356522	68129276	39220264	146	135638											
ALDH6A1	4329	broad.mit.edu	37	chr14	74535733	74535733	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaggagcaaatggattctCaacatggcaaatttcccctt	7	10	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74535733	T	T	74535733	1	4	163	0	1	0	0	0	0	0	0	0	503	841	29	4		4	ALDH6A1	14	74535733	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	6406457	74535733	32813807	147	135639											
GALC	2581	broad.mit.edu	37	chr14	88420873	88420873	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatcgcatacaatgccttgGtcatcctgtgagtgcttgtt	9	9	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88420873	C	C	88420873	1	2	163	0	1	0	0	0	0	0	0	0	6263	1276	44	4		4	GALC	14	88420873	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	13885140	88420873	18928667	148	135640											
ITPK1	3705	broad.mit.edu	37	chr14	93428755	93428755	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcaaactatgggttggggaGagaaaagcagagagaaatta	14	3	0	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93428755	A	A	93428755	1	1	163	0	1	0	0	0	0	0	0	0	7986	957	33	4		4	ITPK1	14	93428755	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	5007882	93428755	13920785	149	135641											
DYNC1H1	1778	broad.mit.edu	37	chr14	102500313	102500313	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcggttttccttttagGtaaaccggagcactgctctt	9	9	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102500313	C	C	102500313	3	2	163	1	0	0	0	0	1	0	0	0	4881	1275	44	4	10632	4	DYNC1H1	14	102500313	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	9071558	102500313	4849227	150	135642											
AHNAK2	113146	broad.mit.edu	37	chr14	105413727	105413727	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcttaaggtccccttgCatggaggggaggctcatgtc	15	9	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105413727	T	T	105413727	3	4	163	1	0	0	0	0	1	0	0	0	415	710	25	4	9330	4	AHNAK2	14	105413727	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	2913414	105413727	1935813	151	135643											
OR4N4	283694	broad.mit.edu	37	chr15	22382659	22382659	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcccccctctatttatttCtgggcaacttggccttcctg	7	15	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22382659	T	T	22382659	2	4	163	1	0	0	0	0	0	0	0	1	11172	912	32	4		4	OR4N4	15	22382659	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08		22382659	80148733	152	135644											
BUB1B	701	broad.mit.edu	37	chr15	40500858	40500858	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaattattgaagacagtcGtgaagccacacactcctctg	7	13	1	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40500858	A	A	40500858	3	1	163	1	0	0	0	0	1	0	0	0	1581	1145	40	4	2092	4	BUB1B	15	40500858	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	18118199	40500858	62030534	153	135645											
PDIA3	2923	broad.mit.edu	37	chr15	44045953	44045953	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattatagtttgagattcttCctagtgagacaacattaaca	6	6	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44045953	T	T	44045953	1	4	163	0	1	0	0	0	0	0	0	0	11763	870	30	4		4	PDIA3	15	44045953	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	3545095	44045953	58485439	154	135646											
EIF3J	8669	broad.mit.edu	37	chr15	44846729	44846729	+	Intron	DEL	A	-	-													tcataatccctgtgctttttAaaaacttttgtctcatttta							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44846729	-	-	44846729	6	5	163	0	1	1	0	1	0	0	0	0	5062	377	13	0		0	EIF3J	15	44846729	Intron	DEL	A	TCGA-50-5939-01A-11D-1625-08	800776	44846729	57684663	155	135647											
SHF	90525	broad.mit.edu	37	chr15	45490821	45490821	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caatgccgtgactcggattcGaaccgaggttgctgcggcca	13	12	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45490821	A	A	45490821	1	1	163	0	1	0	0	0	0	0	0	0	14390	1073	37	4		4	SHF	15	45490821	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	644092	45490821	57040571	156	135648											
WDR90	197335	broad.mit.edu	37	chr16	715599	715599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggacagcccggccctgGgggctggaataggaaatgcc	16	10	0	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	715599	T	T	715599	1	4	163	0	1	0	0	0	0	0	0	0	17464	1247	43	2		2	WDR90	16	715599	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08		715599	89639154	157	135649											
TRAP1	10131	broad.mit.edu	37	chr16	3725361	3725361	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccttccattcaagtacaaGgggaagctgacgaagttgct	11	10	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3725361	A	A	3725361	2	1	163	1	0	0	0	0	0	0	0	1	16579	987	35	4		4	TRAP1	16	3725361	Silent	SNP	G	TCGA-50-5939-01A-11D-1625-08	3009762	3725361	86629392	158	135650											
CREBBP	1387	broad.mit.edu	37	chr16	3817765	3817765	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttgactgagaggctgtgCcgttactgctactctcttct	10	10	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3817765	T	T	3817765	3	4	163	1	0	0	0	0	1	0	0	0	3893	739	26	4	4186	4	CREBBP	16	3817765	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	92404	3817765	86536988	159	135651											
SALL1	6299	broad.mit.edu	37	chr16	51171517	51171517	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagagagagaaaaaaaagAggagggggagagaagcttaa	17	1	0	5			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51171517	T	T	51171517	1	4	163	0	1	0	0	0	0	0	0	0	13921	319	11	5		5	SALL1	16	51171517	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	47353752	51171517	39183236	160	135652											
MMP2	4313	broad.mit.edu	37	chr16	55522477	55522477	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcaccatgggcggcaaCgctgaaggacagccctgcaa	12	13	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55522477	G	G	55522477	3	3	163	1	0	0	0	0	1	0	0	0	9751	535	19	4	884	4	MMP2	16	55522477	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	4350960	55522477	34832276	161	135653											
COQ9	57017	broad.mit.edu	37	chr16	57490845	57490845	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttccctcttccaggaAgaggaagacagaccagttcc	8	12	2	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57490845	G	G	57490845	3	3	163	1	0	0	0	0	1	0	0	0	3783	72	3	5	542	5	COQ9	16	57490845	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	1968368	57490845	32863908	162	135654											
CNTNAP4	85445	broad.mit.edu	37	chr16	76556003	76556003	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatctcagtgcagtcaccCacccacttcaacgacaacca	5	16	3	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76556003	A	A	76556003	2	1	163	1	0	0	0	0	0	0	0	1	3681	581	21	2		2	CNTNAP4	16	76556003	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	19065158	76556003	13798750	163	135655											
MYO1C	4641	broad.mit.edu	37	chr17	1370595	1370595	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccgagccgggtgtgaagtCaatggtgccatccctgccgg	14	13	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1370595	T	T	1370595	3	4	163	1	0	0	0	0	1	0	0	0	10164	826	29	4	93	4	MYO1C	17	1370595	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08		1370595	79824615	164	135656											
NLRP1	22861	broad.mit.edu	37	chr17	5436224	5436224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcgtcagtccccaaagGcttcgtatgcaggtcccctt	9	14	2	0	rs149973177		TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5436224	A	A	5436224	3	1	163	1	0	0	0	0	1	0	0	0	10566	1203	42	4	1298	4	NLRP1	17	5436224	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	4065629	5436224	75758986	165	135657											
NLGN2	57555	broad.mit.edu	37	chr17	7315483	7315483	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcccggtcttaggtccgctCacaaaaaaacgtgacgaggc	10	12	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7315483	T	T	7315483	2	4	163	1	0	0	0	0	0	0	0	1	10557	813	29	4		4	NLGN2	17	7315483	Silent	SNP	C	TCGA-50-5939-01A-11D-1625-08	1879259	7315483	73879727	166	135658											
TP53	7157	broad.mit.edu	37	chr17	7577085	7577085	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgcggagattctcttcctCtgtgcgccggtctctcccag	10	15	3	1	rs112431538		TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577085	T	T	7577085	3	4	163	1	0	0	0	0	1	0	0	0	16505	922	32	4	433	4	TP53	17	7577085	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	261602	7577085	73618125	167	135659											
DNAH9	1770	broad.mit.edu	37	chr17	11604644	11604644	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccagccttcagcagctggTagatatcaggctggctgcat	11	13	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11604644	C	C	11604644	1	2	163	0	1	0	0	0	0	0	0	0	4648	1653	57	5		5	DNAH9	17	11604644	Intron	SNP	T	TCGA-50-5939-01A-11D-1625-08	4027559	11604644	69590566	168	135660											
DRG2	1819	broad.mit.edu	37	chr17	18003602	18003602	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctctgggtgggcagtgacAtcctgcgtaacagggaagct	15	9	1	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18003602	G	G	18003602	1	3	163	0	1	0	0	0	0	0	0	0	4802	232	8	5		5	DRG2	17	18003602	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	6398958	18003602	63191608	169	135661											
ACACA	31	broad.mit.edu	37	chr17	35512644	35512644	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacgtgttcacaatggacaGagttgagagcactgactctc	10	11	2	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35512644	C	C	35512644	3	2	163	1	0	0	0	0	1	0	0	0	106	942	33	4	1799	4	ACACA	17	35512644	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	17509042	35512644	45682566	170	135662											
CDK12	51755	broad.mit.edu	37	chr17	37687195	37687195	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccttgacagaatccttgGtccagaccctggtgaagaac	10	12	0	5			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37687195	C	C	37687195	3	2	163	1	0	0	0	0	1	0	0	0	3158	1261	44	4	4153	4	CDK12	17	37687195	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	2174551	37687195	43508015	171	135663											
TUBG1	7283	broad.mit.edu	37	chr17	40762371	40762372	+	Intron	DEL	CA	-	-													gagggagggccggagggagcCagagttgggaggacttcgga							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40762372	-	-	40762371	6	5	163	0	1	1	0	1	0	0	0	0	16890	609	21	0		0	TUBG1	17	40762371	Intron	DEL	CA	TCGA-50-5939-01A-11D-1625-08	3075176	40762371	40432839	172	135664											
CRHR1	1394	broad.mit.edu	37	chr17	43898645	43898645	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatctacagatccatctacGcatccatctgggccaggatg	8	14	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43898645	A	A	43898645	1	1	163	0	1	0	0	0	0	0	0	0	3903	1102	38	4		4	CRHR1	17	43898645	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	3136274	43898645	37296565	173	135665											
OR4D1	26689	broad.mit.edu	37	chr17	56233005	56233005	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccaactggctctgatacTtccactgcccttctgtggcc	8	15	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56233005	A	A	56233005	3	1	163	1	0	0	0	0	1	0	0	0	11147	1609	56	5	493	5	OR4D1	17	56233005	Missense_Mutation	SNP	T	TCGA-50-5939-01A-11D-1625-08	12334360	56233005	24962205	174	135666											
KIF19	124602	broad.mit.edu	37	chr17	72338224	72338224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctgcctttgaacctcagCctccactccacctgctcacc	4	22	2	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72338224	A	A	72338224	1	1	163	0	1	0	0	0	0	0	0	0	8352	754	26	3		3	KIF19	17	72338224	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	16105219	72338224	8856986	175	135667											
USP36	57602	broad.mit.edu	37	chr17	76794672	76794672	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcacagttcccaaaaacGgctctttcctggcccacggg	9	15	2	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76794672	A	A	76794672	1	1	163	0	1	0	0	0	0	0	0	0	17194	1131	39	4		4	USP36	17	76794672	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	4456448	76794672	4400538	176	135668											
DSC1	1823	broad.mit.edu	37	chr18	28728565	28728565	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatcaaagggagtggatatTctggtgcatagccatctgca	12	7	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28728565	A	A	28728565	3	1	163	1	0	0	0	0	1	0	0	0	4805	1783	62	5	2100	5	DSC1	18	28728565	Missense_Mutation	SNP	T	TCGA-50-5939-01A-11D-1625-08		28728565	49348683	177	135669											
MOCOS	55034	broad.mit.edu	37	chr18	33779985	33779985	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggagtcagataccccctGtcctggatagaagaggtcaa	11	10	3	3			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33779985	A	A	33779985	2	1	163	1	0	0	0	0	0	0	0	1	9783	1364	48	4		4	MOCOS	18	33779985	Silent	SNP	G	TCGA-50-5939-01A-11D-1625-08	5051420	33779985	44297263	178	135670											
PIK3C3	5289	broad.mit.edu	37	chr18	39535148	39535149	+	5'Flank	DNP	GG	TT	TT													gcgtggattggcggcttgctGgcgggggcggaaccggaagt							TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39535149	TT	TT	39535148	1	4	163	0	1	0	0	0	0	0	0	0	12007	1363	47	2		2	PIK3C3	18	39535148	5'Flank	DNP	GG	TCGA-50-5939-01A-11D-1625-08	5755163	39535148	38542100	179	135671											
STK11	6794	broad.mit.edu	37	chr19	1220717	1220717	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcggctggggtcaccctGtaagtgccccgcccccccgg	14	17	1	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220717	T	T	1220717	5	4	163	1	0	0	0	0	0	0	1	0	15405	1391	48	3	753	3	STK11	19	1220717	Splice_Site	SNP	G	TCGA-50-5939-01A-11D-1625-08		1220717	57908266	180	135672											
KEAP1	9817	broad.mit.edu	37	chr19	10602796	10602796	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcgcctggacgtagaacCgtcgctgttcgcagtcgtac	13	13	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10602796	G	G	10602796	3	3	163	1	0	0	0	0	1	0	0	0	8211	652	23	4	1108	4	KEAP1	19	10602796	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08	9382079	10602796	48526187	181	135673											
ZNF577	84765	broad.mit.edu	37	chr19	52383448	52383448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttagcttaccccactaaaCaacaggaaaaagccatagaa	5	12	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52383448	A	A	52383448	1	1	163	0	1	0	0	0	0	0	0	0	18136	493	17	3		3	ZNF577	19	52383448	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	41780652	52383448	6745535	182	135674											
MYADM	91663	broad.mit.edu	37	chr19	54377753	54377753	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtttttgtcaaggtctaaGactctcccaagaggctcccg	10	11	3	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54377753	A	A	54377753	1	1	163	0	1	0	0	0	0	0	0	0	10100	957	33	4		4	MYADM	19	54377753	3'UTR	SNP	G	TCGA-50-5939-01A-11D-1625-08	1994305	54377753	4751230	183	135675											
ITCH	83737	broad.mit.edu	37	chr20	33063788	33063788	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccactgtttcaggcactcGaacagtcatattgtccatag	8	11	2	0	rs111408736		TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33063788	A	A	33063788	1	1	163	0	1	0	0	0	0	0	0	0	7938	1073	37	4		4	ITCH	20	33063788	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08		33063788	29961732	184	135676											
DSN1	79980	broad.mit.edu	37	chr20	35384135	35384135	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggttctgtaatattttctGgtagtcaggttttgtattaa	9	4	3	0			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35384135	A	A	35384135	4	1	163	1	0	0	0	0	0	1	0	0	4820	1357	47	4	259	4	DSN1	20	35384135	Nonsense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	2320347	35384135	27641385	185	135677											
SPINLW1	57119	broad.mit.edu	37	chr20	44170692	44170692	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgctgagagtgaaactGgaagccagtctggagcatcc	14	8	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44170692	A	A	44170692	1	1	163	0	1	0	0	0	0	0	0	0	15185	1363	47	4		4	SPINLW1	20	44170692	3'UTR	SNP	G	TCGA-50-5939-01A-11D-1625-08	8786557	44170692	18854828	186	135678											
TCFL5	10732	broad.mit.edu	37	chr20	61490556	61490556	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtttaaagcgaaaagacaGggaagcgggtggacagaccc	14	7	0	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61490556	A	A	61490556	1	1	163	0	1	0	0	0	0	0	0	0	15821	1015	35	4		4	TCFL5	20	61490556	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	17319864	61490556	1534964	187	135679											
USP16	10600	broad.mit.edu	37	chr21	30414892	30414892	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcaagtagattttttttcCtgtaagattttgtgggggga	11	3	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30414892	G	G	30414892	1	3	163	0	1	0	0	0	0	0	0	0	17173	696	24	4		4	USP16	21	30414892	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08		30414892	17715003	188	135680											
ITSN1	6453	broad.mit.edu	37	chr21	35190760	35190760	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaactcatttcagggcccAtaaggaagtctacaaggtat	9	8	3	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35190760	G	G	35190760	3	3	163	1	0	0	0	0	1	0	0	0	7996	217	8	5	3003	5	ITSN1	21	35190760	Missense_Mutation	SNP	A	TCGA-50-5939-01A-11D-1625-08	4775868	35190760	12939135	189	135681											
RCAN1	1827	broad.mit.edu	37	chr21	35898979	35898979	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accctggtttcactttcgctGaagatatcactgtttgccac	7	12	2	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35898979	A	A	35898979	1	1	163	0	1	0	0	0	0	0	0	0	13276	1281	45	4		4	RCAN1	21	35898979	Intron	SNP	G	TCGA-50-5939-01A-11D-1625-08	708219	35898979	12230916	190	135682											
RRP1B	23076	broad.mit.edu	37	chr21	45093925	45093925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaggtttatttgtgaagCaaaacaagccacaggcttag	12	6	0	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45093925	A	A	45093925	1	1	163	0	1	0	0	0	0	0	0	0	13799	725	25	3		3	RRP1B	21	45093925	Intron	SNP	C	TCGA-50-5939-01A-11D-1625-08	9194946	45093925	3035970	191	135683											
PHKA2	5256	broad.mit.edu	37	chrX	18927024	18927024	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccacgtcaccatggtcatctCtgggccactgaaagtcactt	8	14	4	1			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18927024	T	T	18927024	3	4	163	1	0	0	0	0	1	0	0	0	11939	913	32	4	1504	4	PHKA2	23	18927024	Missense_Mutation	SNP	C	TCGA-50-5939-01A-11D-1625-08		18927024	136343536	192	135684											
DMD	1756	broad.mit.edu	37	chrX	32328177	32328177	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatcaccttgtaaaatacgAatgaaagtgctttggtttta	8	5	1	2			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32328177	T	T	32328177	1	4	163	0	1	0	0	0	0	0	0	0	4620	261	9	5		5	DMD	23	32328177	Intron	SNP	A	TCGA-50-5939-01A-11D-1625-08	13401153	32328177	122942383	193	135685											
DMD	1756	broad.mit.edu	37	chrX	32361373	32361373	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccactgatgagaaatttctaGagccttttttcttctttgag	7	8	3	4			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32361373	A	A	32361373	2	1	163	1	0	0	0	0	0	0	0	1	4620	933	33	4		4	DMD	23	32361373	Silent	SNP	G	TCGA-50-5939-01A-11D-1625-08	33196	32361373	122909187	194	135686											
GPR112	139378	broad.mit.edu	37	chrX	135487991	135487991	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatccagaagactcggcGgaagatgatcctgcatgacc	10	12	0	5			TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135487991	A	A	135487991	3	1	163	1	0	0	0	0	1	0	0	0	6694	1116	39	4	8873	4	GPR112	23	135487991	Missense_Mutation	SNP	G	TCGA-50-5939-01A-11D-1625-08	103126618	135487991	19782569	195	135687											
TTLL10	254173	broad.mit.edu	37	chr1	1119234	1119234	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacaggcccggggtggggTgtgaggggatgcaggccagg	23	7	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1119234	G	G	1119234	1	3	164	0	1	0	0	0	0	0	0	0	16849	1711	59	5		5	TTLL10	1	1119234	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08		1119234	248131387	1	135688											
MMEL1	79258	broad.mit.edu	37	chr1	2535737	2535737	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacctgggccaaaggacgcCgggcagagctgggtggcctc	17	13	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2535737	T	T	2535737	1	4	164	0	1	0	0	0	0	0	0	0	9739	667	23	4		4	MMEL1	1	2535737	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1416503	2535737	246714884	2	135689											
SPSB1	80176	broad.mit.edu	37	chr1	9416202	9416202	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccggtggcccagagcacGgacgctatcaggggcaaagt	14	12	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9416202	T	T	9416202	2	4	164	1	0	0	0	0	0	0	0	1	15230	1103	39	1		1	SPSB1	1	9416202	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	6880465	9416202	239834419	3	135690											
EPHA2	1969	broad.mit.edu	37	chr1	16455882	16455882	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcatggaggcagcctctgGagtgggaggcgggaggcgag	23	7	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16455882	T	T	16455882	1	4	164	0	1	0	0	0	0	0	0	0	5209	1189	41	3		3	EPHA2	1	16455882	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	7039680	16455882	232794739	4	135691											
ACTL8	81569	broad.mit.edu	37	chr1	18149852	18149852	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgaaagaagatgctggagGtgaggcctgccggggcctgc	17	10	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18149852	T	T	18149852	5	4	164	1	0	0	0	0	0	0	1	0	202	1275	44	3	351	3	ACTL8	1	18149852	Splice_Site	SNP	G	TCGA-50-5941-01A-11D-1753-08	1693970	18149852	231100769	5	135692											
EIF4G3	8672	broad.mit.edu	37	chr1	21307472	21307472	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacaattcatccacccagctCcctctgatgtgaatccgggt	7	15	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21307472	A	A	21307472	1	1	164	0	1	0	0	0	0	0	0	0	5080	870	30	3		3	EIF4G3	1	21307472	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	3157620	21307472	227943149	6	135693											
HNRNPR	10236	broad.mit.edu	37	chr1	23667598	23667599	+	Intron	DNP	TA	AT	AT													gatttatctaaactaatttgTatacatgctgctaataacct							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	23667599	AT	AT	23667598	1	1	164	0	1	0	0	0	0	0	0	0	7339	1653	57	5		5	HNRNPR	1	23667598	Intron	DNP	TA	TCGA-50-5941-01A-11D-1753-08	2360126	23667598	225583023	7	135694											
ZDHHC18	84243	broad.mit.edu	37	chr1	27180149	27180149	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgagatagactctgccGtccaacccctggcctagagc	11	14	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27180149	T	T	27180149	1	4	164	0	1	0	0	0	0	0	0	0	17734	1160	40	3		3	ZDHHC18	1	27180149	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	3512551	27180149	222070472	8	135695											
TSSK3	81629	broad.mit.edu	37	chr1	32829553	32829553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccgggagctgagccagaCcttctgcggcagtacagcct	12	14	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32829553	A	A	32829553	3	1	164	1	0	0	0	0	1	0	0	0	16795	507	18	3	509	3	TSSK3	1	32829553	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5649404	32829553	216421068	9	135696											
CSMD2	114784	broad.mit.edu	37	chr1	34049141	34049141	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacatcctgtggagcttcTggcaagccctgataggaaaa	12	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34049141	C	C	34049141	1	2	164	0	1	0	0	0	0	0	0	0	3979	1595	55	5		5	CSMD2	1	34049141	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	1219588	34049141	215201480	10	135697											
MTF1	4520	broad.mit.edu	37	chr1	38283017	38283017	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagttttagaaactgggaCaaagcaataattagctgtgc	9	5	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38283017	T	T	38283017	1	4	164	0	1	0	0	0	0	0	0	0	10016	493	17	4		4	MTF1	1	38283017	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4233876	38283017	210967604	11	135698											
ZNF642	339559	broad.mit.edu	37	chr1	40961204	40961204	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcatagaactcacactgggGagaaaccctatgtatgtgat	9	8	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40961204	A	A	40961204	3	1	164	1	0	0	0	0	1	0	0	0	18185	1175	41	4	1072	4	ZNF642	1	40961204	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2678187	40961204	208289417	12	135699											
PTCH2	8643	broad.mit.edu	37	chr1	45307784	45307784	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttcccttctcaccctgtAtatctgctgcccagccctcg	5	19	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45307784	G	G	45307784	1	3	164	0	1	0	0	0	0	0	0	0	12837	464	16	5		5	PTCH2	1	45307784	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	4346580	45307784	203942837	13	135700											
CYP4X1	260293	broad.mit.edu	37	chr1	47489621	47489621	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctgctgcgggacctgcgCcccttcccagcgccccccac	11	22	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47489621	A	A	47489621	2	1	164	1	0	0	0	0	0	0	0	1	4226	726	26	3		3	CYP4X1	1	47489621	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	2181837	47489621	201761000	14	135701											
SLC5A9	200010	broad.mit.edu	37	chr1	48701566	48701566	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggcaggtgcgccggcccctCcttccctccttccgaagtgc	12	18	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48701566	A	A	48701566	1	1	164	0	1	0	0	0	0	0	0	0	14786	870	30	3		3	SLC5A9	1	48701566	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1211945	48701566	200549055	15	135702											
RAB3B	5865	broad.mit.edu	37	chr1	52403027	52403027	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atacatcagaatgaagcccaTggccccacggtaataggctg	10	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52403027	A	A	52403027	3	1	164	1	0	0	0	0	1	0	0	0	13040	1464	51	5	385	5	RAB3B	1	52403027	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	3701461	52403027	196847594	16	135703											
ORC1L	4998	broad.mit.edu	37	chr1	52851472	52851472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattttatgtgaatgaaagCagaggccccatggttcctgc	10	8	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52851472	A	A	52851472	1	1	164	0	1	0	0	0	0	0	0	0	11355	725	25	3		3	ORC1L	1	52851472	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	448445	52851472	196399149	17	135704											
DAB1	1600	broad.mit.edu	37	chr1	57537871	57537871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttggtcatatctgagaGtgggccctcaaagaccaacg	11	10	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57537871	T	T	57537871	1	4	164	0	1	0	0	0	0	0	0	0	4250	1044	36	3		3	DAB1	1	57537871	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4686399	57537871	191712750	18	135705											
INADL	10207	broad.mit.edu	37	chr1	62504496	62504496	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcagggttctgggccgGggtggacggtgggtgggatg	23	5	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62504496	C	C	62504496	1	2	164	0	1	0	0	0	0	0	0	0	7801	1247	43	4		4	INADL	1	62504496	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4966625	62504496	186746125	19	135706											
KANK4	163782	broad.mit.edu	37	chr1	62739867	62739867	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctcgctgatgttgagctcGatttcttccaggaggagctc	11	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739867	T	T	62739867	2	4	164	1	0	0	0	0	0	0	0	1	8049	1048	37	3		3	KANK4	1	62739867	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	235371	62739867	186510754	20	135707											
USP1	7398	broad.mit.edu	37	chr1	62915921	62915921	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttttcctcccaaaggtttGattgttatggtggtggactt	10	6	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62915921	A	A	62915921	3	1	164	1	0	0	0	0	1	0	0	0	17166	1290	45	4	1657	4	USP1	1	62915921	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	176054	62915921	186334700	21	135708											
NEGR1	257194	broad.mit.edu	37	chr1	72400931	72400931	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaccacttatcacctccCgcaaaaataatacttgaccg	4	14	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72400931	A	A	72400931	2	1	164	1	0	0	0	0	0	0	0	1	10412	639	23	1		1	NEGR1	1	72400931	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	9485010	72400931	176849690	22	135709											
SLC44A5	204962	broad.mit.edu	37	chr1	75680203	75680203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatatccaataatgccaCcaacactttaaataacaaca	1	11	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75680203	A	A	75680203	1	1	164	0	1	0	0	0	0	0	0	0	14753	522	18	3		3	SLC44A5	1	75680203	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	3279272	75680203	173570418	23	135710											
COL24A1	255631	broad.mit.edu	37	chr1	86355338	86355338	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtaggaaaagtggtgtgtGaagatgttttagacactttc	12	3	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86355338	C	C	86355338	1	2	164	0	1	0	0	0	0	0	0	0	3715	1305	45	4		4	COL24A1	1	86355338	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	10675135	86355338	162895283	24	135711											
CLCA2	9635	broad.mit.edu	37	chr1	86905999	86905999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatctggaggaattatcaCgtcttacaggtaataaactt	7	7	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86905999	A	A	86905999	3	1	164	1	0	0	0	0	1	0	0	0	3489	536	19	3	1402	3	CLCA2	1	86905999	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	550661	86905999	162344622	25	135712											
AGL	178	broad.mit.edu	37	chr1	100329901	100329901	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattttaggctggttttgttTgtttgtttttacagtggtct	10	4	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100329901	A	A	100329901	1	1	164	0	1	0	0	0	0	0	0	0	384	1827	63	5		5	AGL	1	100329901	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	13423902	100329901	148920720	26	135713											
COL11A1	1301	broad.mit.edu	37	chr1	103428231	103428231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaccttcttttcctgcaGcaccaggaagaccttgctca	7	14	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103428231	T	T	103428231	3	4	164	1	0	0	0	0	1	0	0	0	3699	971	34	3	2534	3	COL11A1	1	103428231	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3098330	103428231	145822390	27	135714											
NTNG1	22854	broad.mit.edu	37	chr1	107866766	107866766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctattaaagaggagaatcCagttagggcaaataaaaatg	10	4	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107866766	A	A	107866766	1	1	164	0	1	0	0	0	0	0	0	0	10799	609	21	2		2	NTNG1	1	107866766	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4438535	107866766	141383855	28	135715											
FNDC7	163479	broad.mit.edu	37	chr1	109284551	109284551	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatttgtcttgcagagttGtctcatttgttagtgattag	9	7	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109284551	T	T	109284551	1	4	164	0	1	0	0	0	0	0	0	0	6031	1392	48	3		3	FNDC7	1	109284551	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	1417785	109284551	139966070	29	135716											
KCNA10	3744	broad.mit.edu	37	chr1	111060811	111060811	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagaggagccagaactgaCggtggatgtcattggtgggt	16	6	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111060811	T	T	111060811	3	4	164	1	0	0	0	0	1	0	0	0	8072	536	19	4	940	4	KCNA10	1	111060811	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1776260	111060811	138189810	30	135717											
SYT6	148281	broad.mit.edu	37	chr1	114682455	114682455	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttccaaggggggattagcAgaagagggactggaggcctc	17	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114682455	G	G	114682455	2	3	164	1	0	0	0	0	0	0	0	1	15597	175	7	5		5	SYT6	1	114682455	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	3621644	114682455	134568166	31	135718											
SYCP1	6847	broad.mit.edu	37	chr1	115527385	115527386	+	Frame_Shift_Ins	INS	-	A	A													aacaaaaccaaaactacagcINSaaagagaaaacttgaatata							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115527386	A	A	115527385	7	5	164	1	0	1	1	0	0	0	0	0	15550	711	25	0	2713	0	SYCP1	1	115527385	Frame_Shift_Ins	INS	-	TCGA-50-5941-01A-11D-1753-08	844930	115527385	133723236	32	135719											
IGSF3	3321	broad.mit.edu	37	chr1	117127643	117127643	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctccagaaccgacaggttCccctgggcttggctgagcct	12	14	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117127643	A	A	117127643	2	1	164	1	0	0	0	0	0	0	0	1	7671	842	30	3		3	IGSF3	1	117127643	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	1600258	117127643	132122978	33	135720											
PTGFRN	5738	broad.mit.edu	37	chr1	117504136	117504136	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttttctaaggaacatacAgacacgttcaatttccggat	6	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117504136	G	G	117504136	2	3	164	1	0	0	0	0	0	0	0	1	12856	175	7	5		5	PTGFRN	1	117504136	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	376493	117504136	131746485	34	135721											
HMGCS2	3158	broad.mit.edu	37	chr1	120298057	120298057	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcagtactcactgggacaGaagcgaggccaggcacccgt	13	12	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120298057	C	C	120298057	3	2	164	1	0	0	0	0	1	0	0	0	7300	933	33	4	362	4	HMGCS2	1	120298057	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2793921	120298057	128952564	35	135722											
NBPF7	343505	broad.mit.edu	37	chr1	120384050	120384050	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccgtgccagcctacacCcctcagccagctgttctcgg	11	17	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120384050	G	G	120384050	3	3	164	1	0	0	0	0	1	0	0	0	10293	623	22	4	776	4	NBPF7	1	120384050	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	85993	120384050	128866571	36	135723											
GJA8	2703	broad.mit.edu	37	chr1	147381011	147381011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcagcacaggacccctggGggacttgtcccggggctacc	14	14	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147381011	T	T	147381011	3	4	164	1	0	0	0	0	1	0	0	0	6469	1232	43	2	931	2	GJA8	1	147381011	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	26996961	147381011	101869610	37	135724											
FLG	2312	broad.mit.edu	37	chr1	152276020	152276020	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgggaccctgagtgtccaGacctatctaccgattgctcg	11	12	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152276020	T	T	152276020	3	4	164	1	0	0	0	0	1	0	0	0	5979	942	33	3	847	3	FLG	1	152276020	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4895009	152276020	96974601	38	135725											
FLG	2312	broad.mit.edu	37	chr1	152280635	152280635	+	Frame_Shift_Del	DEL	C	-	-													actgtcactgtcctggctaaCactggatccccggggcctgc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152280635	-	-	152280635	7	5	164	1	0	1	0	1	0	0	0	0	5979	478	17	0	5462	0	FLG	1	152280635	Frame_Shift_Del	DEL	C	TCGA-50-5941-01A-11D-1753-08	4615	152280635	96969986	39	135726											
FLG2	388698	broad.mit.edu	37	chr1	152325492	152325492	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttctcgtgagtgtggtctGtgtgagccccctgagtgcac	14	10	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152325492	C	C	152325492	3	2	164	1	0	0	0	0	1	0	0	0	5980	1368	48	4	2409	4	FLG2	1	152325492	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	44857	152325492	96925129	40	135727											
LCE2C	353140	broad.mit.edu	37	chr1	152648533	152648533	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagtgccagccccctccCaagtgtcctcccaagtgtac	8	18	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152648533	G	G	152648533	2	3	164	1	0	0	0	0	0	0	0	1	8739	581	21	4		4	LCE2C	1	152648533	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	323041	152648533	96602088	41	135728											
SLC39A1	27173	broad.mit.edu	37	chr1	153932916	153932916	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggagcagcaaagccagGcacagctccatggcccgagc	13	13	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153932916	A	A	153932916	2	1	164	1	0	0	0	0	0	0	0	1	14726	1195	42	4		4	SLC39A1	1	153932916	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	1284383	153932916	95317705	42	135729											
SMG5	23381	broad.mit.edu	37	chr1	156223237	156223237	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacttgggtcctgatttccTacctgaagtcgtagctgagc	11	11	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156223237	A	A	156223237	1	1	164	0	1	0	0	0	0	0	0	0	14910	1537	53	5		5	SMG5	1	156223237	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	2290321	156223237	93027384	43	135730											
FCRL3	115352	broad.mit.edu	37	chr1	157650724	157650724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgctcaatccctcttccCtccctggctcctccctagag	6	19	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157650724	A	A	157650724	1	1	164	0	1	0	0	0	0	0	0	0	5853	696	24	2		2	FCRL3	1	157650724	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1427487	157650724	91599897	44	135731											
CD5L	922	broad.mit.edu	37	chr1	157805847	157805847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtccttaatgtcccagcCgtcatcacacacggtgcccc	7	18	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157805847	A	A	157805847	3	1	164	1	0	0	0	0	1	0	0	0	3057	652	23	1	905	1	CD5L	1	157805847	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	155123	157805847	91444774	45	135732											
CD1B	910	broad.mit.edu	37	chr1	158300956	158300956	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacaagaacctagagtcTaaagaacacaggaagtctga	9	7	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158300956	C	C	158300956	1	2	164	0	1	0	0	0	0	0	0	0	3005	1537	53	5		5	CD1B	1	158300956	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	495109	158300956	90949665	46	135733											
SPTA1	6708	broad.mit.edu	37	chr1	158627350	158627350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtttctgcttcatgcaGgtcagccaggtactgctgga	11	11	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158627350	T	T	158627350	3	4	164	1	0	0	0	0	1	0	0	0	15234	991	35	2	4673	2	SPTA1	1	158627350	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	326394	158627350	90623271	47	135734											
SPTA1	6708	broad.mit.edu	37	chr1	158632506	158632506	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actaaccaaggtaggtggaaGtagctgagggttcagtctct	13	7	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158632506	C	C	158632506	3	2	164	1	0	0	0	0	1	0	0	0	15234	1029	36	4	4953	4	SPTA1	1	158632506	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5156	158632506	90618115	48	135735											
SPTA1	6708	broad.mit.edu	37	chr1	158653091	158653091	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccactcaaggtttatatctCatataatcagttaaaaccct	4	10	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158653091	A	A	158653091	1	1	164	0	1	0	0	0	0	0	0	0	15234	841	29	3		3	SPTA1	1	158653091	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	20585	158653091	90597530	49	135736											
OR6K2	81448	broad.mit.edu	37	chr1	158670176	158670176	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaccattgaaggaaatgctCctctcactaagcaggctaga	8	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158670176	T	T	158670176	2	4	164	1	0	0	0	0	0	0	0	1	11296	854	30	4		4	OR6K2	1	158670176	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	17085	158670176	90580445	50	135737											
FCER1A	2205	broad.mit.edu	37	chr1	159275977	159275977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggaacctactactgtacGggcaaagtgtggcagctgga	14	8	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159275977	T	T	159275977	2	4	164	1	0	0	0	0	0	0	0	1	5831	1103	39	1		1	FCER1A	1	159275977	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	605801	159275977	89974644	51	135738											
VANGL2	57216	broad.mit.edu	37	chr1	160388876	160388876	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgacctcacacgcatcgccAaggacatggaggacagtgtc	11	12	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160388876	T	T	160388876	4	4	164	1	0	0	0	0	0	1	0	0	17247	131	5	5	287	5	VANGL2	1	160388876	Nonsense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	1112899	160388876	88861745	52	135739											
DDR2	4921	broad.mit.edu	37	chr1	162725424	162725424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaatgggcctgagcagtaGgcactcacttggctgtgttt	14	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162725424	T	T	162725424	1	4	164	0	1	0	0	0	0	0	0	0	4370	1015	35	2		2	DDR2	1	162725424	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2336548	162725424	86525197	53	135740											
C1orf129	80133	broad.mit.edu	37	chr1	170955626	170955626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttggctcttgagcatcccCcaccatgtctgagtttagct	9	13	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170955626	A	A	170955626	1	1	164	0	1	0	0	0	0	0	0	0	2016	638	22	2		2	C1orf129	1	170955626	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	8230202	170955626	78294995	54	135741											
FMO1	2326	broad.mit.edu	37	chr1	171250038	171250038	+	Frame_Shift_Del	DEL	C	-	-													aacatgttgagaaattccctCccaaccccaattgtgacttg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171250038	-	-	171250038	7	5	164	1	0	1	0	1	0	0	0	0	6012	842	30	0	759	0	FMO1	1	171250038	Frame_Shift_Del	DEL	C	TCGA-50-5941-01A-11D-1753-08	294412	171250038	78000583	55	135742											
TNN	63923	broad.mit.edu	37	chr1	175049198	175049198	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggcgccttacacaggtctGcatcctgcacacccaccctt	7	17	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175049198	C	C	175049198	1	2	164	0	1	0	0	0	0	0	0	0	16446	1334	46	4		4	TNN	1	175049198	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	3799160	175049198	74201423	56	135743											
PAPPA2	60676	broad.mit.edu	37	chr1	176811630	176811630	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccactgcctcagaggcaGtaagaaagagaggccgaccc	11	14	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176811630	T	T	176811630	1	4	164	0	1	0	0	0	0	0	0	0	11527	1044	36	3		3	PAPPA2	1	176811630	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	1762432	176811630	72438991	57	135744											
ASTN1	460	broad.mit.edu	37	chr1	176863929	176863929	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcagcaccttggggtcTctttcccgctcctcagactc	8	15	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176863929	A	A	176863929	3	1	164	1	0	0	0	0	1	0	0	0	1068	1548	54	5	1207	5	ASTN1	1	176863929	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	52299	176863929	72386692	58	135745											
SMG7	9887	broad.mit.edu	37	chr1	183511555	183511557	+	In_Frame_Del	DEL	ACA	-	-													taagaatgatggaaagaaggAcaacaacaagaggaaaactg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	183511557	-	-	183511555	7	5	164	1	0	1	0	1	0	0	0	0	14912	275	10	0	1814	0	SMG7	1	183511555	In_Frame_Del	DEL	ACA	TCGA-50-5941-01A-11D-1753-08	6647626	183511555	65739066	59	135746											
EDEM3	80267	broad.mit.edu	37	chr1	184679666	184679666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagggggtttagctccactCctgaaactctcctctctgct	9	13	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184679666	A	A	184679666	3	1	164	1	0	0	0	0	1	0	0	0	4953	854	30	3	1111	3	EDEM3	1	184679666	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1168111	184679666	64570955	60	135747											
TPR	7175	broad.mit.edu	37	chr1	186286693	186286693	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttgaaccggctcttcttcCtgctggctatcaatttctag	8	12	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186286693	G	G	186286693	3	3	164	1	0	0	0	0	1	0	0	0	16540	680	24	4	242	4	TPR	1	186286693	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1607027	186286693	62963928	61	135748											
KCNT2	343450	broad.mit.edu	37	chr1	196274535	196274535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatatggtattttttataacAacatatttatgagtgagtga	7	2	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196274535	T	T	196274535	1	4	164	0	1	0	0	0	0	0	0	0	8162	145	5	5		5	KCNT2	1	196274535	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	9987842	196274535	52976086	62	135749											
CFHR2	3080	broad.mit.edu	37	chr1	196928191	196928191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgggaaactggtatatcCcagttgtgaagaaaaataga	11	4	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196928191	A	A	196928191	3	1	164	1	0	0	0	0	1	0	0	0	3315	623	22	2	812	2	CFHR2	1	196928191	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	653656	196928191	52322430	63	135750											
LGR6	59352	broad.mit.edu	37	chr1	202245330	202245330	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcacaactttagtcccaggGagcctcaaaggccctgttga	10	12	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202245330	T	T	202245330	1	4	164	0	1	0	0	0	0	0	0	0	8830	1189	41	3		3	LGR6	1	202245330	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5317139	202245330	47005291	64	135751											
SYT2	127833	broad.mit.edu	37	chr1	202572283	202572283	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagagggaacaagttaaaaGgggaggaccgagaagtctgg	17	4	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202572283	A	A	202572283	1	1	164	0	1	0	0	0	0	0	0	0	15593	1015	35	4		4	SYT2	1	202572283	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	326953	202572283	46678338	65	135752											
LRRN2	10446	broad.mit.edu	37	chr1	204588512	204588512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaagttcatgtccaggatGgcatctaccttgttgccgcc	11	12	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204588512	T	T	204588512	2	4	164	1	0	0	0	0	0	0	0	1	9122	1335	47	2		2	LRRN2	1	204588512	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2016229	204588512	44662109	66	135753											
CNTN2	6900	broad.mit.edu	37	chr1	205033990	205033990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttggtgtcaaggccacccCaggattcagttttgcttggg	13	9	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205033990	A	A	205033990	1	1	164	0	1	0	0	0	0	0	0	0	3673	609	21	2		2	CNTN2	1	205033990	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	445478	205033990	44216631	67	135754											
PLXNA2	5362	broad.mit.edu	37	chr1	208218405	208218405	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcattacagacgcagggctCactcaccatgaccttgtgct	10	13	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208218405	A	A	208218405	1	1	164	0	1	0	0	0	0	0	0	0	12215	841	29	3		3	PLXNA2	1	208218405	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	3184415	208218405	41032216	68	135755											
LAMB3	3914	broad.mit.edu	37	chr1	209788495	209788495	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctacacaccaggggtggtCcaggctgtactttaggctgc	13	11	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209788495	A	A	209788495	1	1	164	0	1	0	0	0	0	0	0	0	8684	870	30	3		3	LAMB3	1	209788495	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	1570090	209788495	39462126	69	135756											
SYT14	255928	broad.mit.edu	37	chr1	210267755	210267755	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagtggttctccccatctGtcatgtacaccctcagaaat	7	13	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210267755	T	T	210267755	2	4	164	1	0	0	0	0	0	0	0	1	15589	1364	48	3		3	SYT14	1	210267755	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	479260	210267755	38982866	70	135757											
USH2A	7399	broad.mit.edu	37	chr1	215933287	215933287	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgatattttttctgttgAttttaaaaaatatctaactg	5	4	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215933287	C	C	215933287	1	2	164	0	1	0	0	0	0	0	0	0	17162	348	12	5		5	USH2A	1	215933287	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	5665532	215933287	33317334	71	135758											
MARK1	4139	broad.mit.edu	37	chr1	220752872	220752872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttgccaaagtcaaattGgcaagacacgttctaactgg	8	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220752872	T	T	220752872	3	4	164	1	0	0	0	0	1	0	0	0	9404	1339	47	2	234	2	MARK1	1	220752872	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4819585	220752872	28497749	72	135759											
HHIPL2	79802	broad.mit.edu	37	chr1	222695919	222695919	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcctctctcacgtcaccCtgtcggccaccttgaccaat	5	19	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222695919	A	A	222695919	1	1	164	0	1	0	0	0	0	0	0	0	7161	696	24	2		2	HHIPL2	1	222695919	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	1943047	222695919	26554702	73	135760											
HHIPL2	79802	broad.mit.edu	37	chr1	222715289	222715289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgagtttgatgccatccCtgcaaaaacaccacaccagg	7	12	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222715289	A	A	222715289	1	1	164	0	1	0	0	0	0	0	0	0	7161	696	24	2		2	HHIPL2	1	222715289	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	19370	222715289	26535332	74	135761											
PSEN2	5664	broad.mit.edu	37	chr1	227068277	227068277	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcagcctctggacagcgaTcactcagcctctggacagcg	10	15	5	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227068277	A	A	227068277	1	1	164	0	1	0	0	0	0	0	0	0	12757	1450	50	5		5	PSEN2	1	227068277	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	4352988	227068277	22182344	75	135762											
CABC1	56997	broad.mit.edu	37	chr1	227171593	227171593	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccttgcgtgtttgcaccAgggaggcagaagggaccatg	15	11	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227171593	G	G	227171593	1	3	164	0	1	0	0	0	0	0	0	0	2553	203	7	5		5	CABC1	1	227171593	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	103316	227171593	22079028	76	135763											
OBSCN	84033	broad.mit.edu	37	chr1	228402843	228402843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctacggggctgctcacctGccccggaatcccccaggtcc	10	19	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228402843	T	T	228402843	1	4	164	0	1	0	0	0	0	0	0	0	10907	1334	46	3		3	OBSCN	1	228402843	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1231250	228402843	20847778	77	135764											
OBSCN	84033	broad.mit.edu	37	chr1	228471364	228471364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaccagcccagccaggaGggcctgaccctgcggctcac	12	17	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228471364	T	T	228471364	3	4	164	1	0	0	0	0	1	0	0	0	10907	991	35	2	9024	2	OBSCN	1	228471364	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	68521	228471364	20779257	78	135765											
DISC1	27185	broad.mit.edu	37	chr1	232172460	232172460	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctctcaggagggagctccaGatggtgaaggaaactctgca	13	9	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232172460	A	A	232172460	2	1	164	1	0	0	0	0	0	0	0	1	4578	933	33	4		4	DISC1	1	232172460	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	3701096	232172460	17078161	79	135766											
PCNXL2	80003	broad.mit.edu	37	chr1	233394396	233394396	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgtcagactttacactGgtcttctctgtgccaaccac	7	14	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233394396	A	A	233394396	2	1	164	1	0	0	0	0	0	0	0	1	11686	1335	47	4		4	PCNXL2	1	233394396	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	1221936	233394396	15856225	80	135767											
LYST	1130	broad.mit.edu	37	chr1	235860531	235860531	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcactgggggaacccacGtattccccccatttcaagcc	10	15	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235860531	A	A	235860531	2	1	164	1	0	0	0	0	0	0	0	1	9216	1140	40	4		4	LYST	1	235860531	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2466135	235860531	13390090	81	135768											
NID1	4811	broad.mit.edu	37	chr1	236201523	236201523	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgttgttagcacacGtctggcgggaatccgtgtta	14	8	2	0	rs142155830	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236201523	A	A	236201523	3	1	164	1	0	0	0	0	1	0	0	0	10509	1145	40	4	2641	4	NID1	1	236201523	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	340992	236201523	13049098	82	135769											
RYR2	6262	broad.mit.edu	37	chr1	237551440	237551440	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatggacacatggacgagTgtctcactgtcccttcagga	11	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237551440	A	A	237551440	3	1	164	1	0	0	0	0	1	0	0	0	13880	1696	59	5	768	5	RYR2	1	237551440	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	1349917	237551440	11699181	83	135770											
GREM2	64388	broad.mit.edu	37	chr1	240656352	240656352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttgagtcggaagggtgGgtccaggccggggcactcga	17	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240656352	T	T	240656352	3	4	164	1	0	0	0	0	1	0	0	0	6828	1232	43	2	86	2	GREM2	1	240656352	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3104912	240656352	8594269	84	135771											
PLD5	200150	broad.mit.edu	37	chr1	242383324	242383324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtccaaaccggcactgCcgatatacacgtgctgtttg	10	13	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242383324	A	A	242383324	3	1	164	1	0	0	0	0	1	0	0	0	12144	739	26	3	933	3	PLD5	1	242383324	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1726972	242383324	6867297	85	135772											
PLD5	200150	broad.mit.edu	37	chr1	242383405	242383405	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcggtcatgttcatgtacGtcacctcggctcctaggagt	11	11	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242383405	A	A	242383405	3	1	164	1	0	0	0	0	1	0	0	0	12144	1145	40	4	1014	4	PLD5	1	242383405	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	81	242383405	6867216	86	135773											
PLD5	200150	broad.mit.edu	37	chr1	242428646	242428646	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accttggtcttaccctttaaTttcaaggcttctaatacctt	4	11	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242428646	A	A	242428646	3	1	164	1	0	0	0	0	1	0	0	0	12144	1490	52	5	1038	5	PLD5	1	242428646	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	45241	242428646	6821975	87	135774											
KIF26B	55083	broad.mit.edu	37	chr1	245850143	245850143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggctgagcgagatgagCgcgggcagtgagggtgagca	19	8	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	245850143	A	A	245850143	3	1	164	1	0	0	0	0	1	0	0	0	8365	767	27	3	3904	3	KIF26B	1	245850143	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3421497	245850143	3400478	88	135775											
SCCPDH	51097	broad.mit.edu	37	chr1	246927551	246927551	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccttctccttcacagattGatgctgcctcattcacgctg	7	14	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246927551	A	A	246927551	3	1	164	1	0	0	0	0	1	0	0	0	13997	1290	45	4	1032	4	SCCPDH	1	246927551	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1077408	246927551	2323070	89	135776											
ZNF695	57116	broad.mit.edu	37	chr1	247162709	247162709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctttccttgcctccagaCagatgatcagttctggctta	8	12	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247162709	A	A	247162709	3	1	164	1	0	0	0	0	1	0	0	0	18225	478	17	3	1355	3	ZNF695	1	247162709	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	235158	247162709	2087912	90	135777											
NLRP3	114548	broad.mit.edu	37	chr1	247588044	247588044	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtggcaagagccttgcCcagacatccaagaccaccac	10	14	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588044	A	A	247588044	2	1	164	1	0	0	0	0	0	0	0	1	10573	610	22	2		2	NLRP3	1	247588044	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	425335	247588044	1662577	91	135778											
OR2W3	343171	broad.mit.edu	37	chr1	248059379	248059379	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccatgtctcctgtgacccTgcgcttaccccgctgtgggc	12	16	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059379	A	A	248059379	3	1	164	1	0	0	0	0	1	0	0	0	11127	1580	55	5	493	5	OR2W3	1	248059379	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	471335	248059379	1191242	92	135779											
OR2L13	284521	broad.mit.edu	37	chr1	248185236	248185236	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtctcccttcaggaaggatCgtatgaatgccccatggaaa	10	10	2	1	rs141972552	by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248185236	G	G	248185236	1	3	164	0	1	0	0	0	0	0	0	0	11100	899	31	4		4	OR2L13	1	248185236	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	125857	248185236	1065385	93	135780											
OR2M5	127059	broad.mit.edu	37	chr1	248308286	248308286	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaagaacacattttgttCtgattctatactttttgaac	5	7	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308286	A	A	248308286	1	1	164	0	1	0	0	0	0	0	0	0	11107	928	32	3		3	OR2M5	1	248308286	5'Flank	SNP	C	TCGA-50-5941-01A-11D-1753-08	123050	248308286	942335	94	135781											
OR2M4	26245	broad.mit.edu	37	chr1	248402653	248402653	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgaatccgaaactctgTgtcttcatgactgttgcttc	7	11	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248402653	C	C	248402653	2	2	164	1	0	0	0	0	0	0	0	1	11106	1702	59	5		5	OR2M4	1	248402653	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	94367	248402653	847968	95	135782											
OR2T12	127064	broad.mit.edu	37	chr1	248458123	248458123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcatataggtaaaaatgCcagctccataaaagagtccc	7	10	1	1	rs140090926	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458123	A	A	248458123	3	1	164	1	0	0	0	0	1	0	0	0	11113	739	26	3	207	3	OR2T12	1	248458123	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	55470	248458123	792498	96	135783											
OR2T6	254879	broad.mit.edu	37	chr1	248550949	248550949	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaccagaggctttaccCtcatggggctcttcactcac	8	15	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248550949	T	T	248550949	3	4	164	1	0	0	0	0	1	0	0	0	11123	681	24	4	42	4	OR2T6	1	248550949	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	92826	248550949	699672	97	135784											
SNTG2	54221	broad.mit.edu	37	chr2	1079468	1079468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttatttaaatatccccaaCtactggctttcactgtgtca	5	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1079468	A	A	1079468	1	1	164	0	1	0	0	0	0	0	0	0	14989	580	20	3		3	SNTG2	2	1079468	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08		1079468	242119905	98	135785											
TPO	7173	broad.mit.edu	37	chr2	1520666	1520666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccccagactccgggaggCtccctcgggtgacttggatc	14	14	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1520666	A	A	1520666	3	1	164	1	0	0	0	0	1	0	0	0	16534	797	28	3	2584	3	TPO	2	1520666	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	441198	1520666	241678707	99	135786											
VSNL1	7447	broad.mit.edu	37	chr2	17830643	17830643	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcgccccgattccatcccctCccgacacctgactgcgcgtg	8	20	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17830643	G	G	17830643	1	3	164	0	1	0	0	0	0	0	0	0	17354	870	30	4		4	VSNL1	2	17830643	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	16309977	17830643	225368730	100	135787											
GEN1	348654	broad.mit.edu	37	chr2	17953925	17953925	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctaaggatcatgaacgtaAtggatgcagattatgtaaaa	9	5	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17953925	G	G	17953925	3	3	164	1	0	0	0	0	1	0	0	0	6399	101	4	5	853	5	GEN1	2	17953925	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	123282	17953925	225245448	101	135788											
APOB	338	broad.mit.edu	37	chr2	21233331	21233331	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcagtttctccttggcatGtgaaacttgtctctcccaat	7	11	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21233331	C	C	21233331	3	2	164	1	0	0	0	0	1	0	0	0	787	1377	48	4	7298	4	APOB	2	21233331	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3279406	21233331	221966042	102	135789											
ADCY3	109	broad.mit.edu	37	chr2	25048944	25048944	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtagtagaagctgagcatCatgaggaacaccatcaccgt	10	9	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25048944	A	A	25048944	3	1	164	1	0	0	0	0	1	0	0	0	295	826	29	3	915	3	ADCY3	2	25048944	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3815613	25048944	218150429	103	135790											
OTOF	9381	broad.mit.edu	37	chr2	26725160	26725160	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggggttgcagggctcccgtCcactcaccgcttgttggaga	14	12	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26725160	T	T	26725160	1	4	164	0	1	0	0	0	0	0	0	0	11397	870	30	4		4	OTOF	2	26725160	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1676216	26725160	216474213	104	135791											
DPYSL5	56896	broad.mit.edu	37	chr2	27121559	27121559	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgatccctggtggcatcgaCaccagcacccacttccacca	8	17	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27121559	G	G	27121559	3	3	164	1	0	0	0	0	1	0	0	0	4790	477	17	4	194	4	DPYSL5	2	27121559	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	396399	27121559	216077814	105	135792											
SLC8A1	6546	broad.mit.edu	37	chr2	40342547	40342547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgccgatacagcagcaccCccacattgatgaaagcaaaa	7	14	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40342547	A	A	40342547	3	1	164	1	0	0	0	0	1	0	0	0	14820	623	22	2	157	2	SLC8A1	2	40342547	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	13220988	40342547	202856826	106	135793											
ABCG8	64241	broad.mit.edu	37	chr2	44079912	44079912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgatgacgtctggcaCccccatctacttaggggcgg	11	15	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44079912	A	A	44079912	3	1	164	1	0	0	0	0	1	0	0	0	72	507	18	3	891	3	ABCG8	2	44079912	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3737365	44079912	199119461	107	135794											
PREPL	9581	broad.mit.edu	37	chr2	44566424	44566424	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggccatctatcaaccaCacttcagaagtagtcttgtt	6	12	5	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44566424	A	A	44566424	2	1	164	1	0	0	0	0	0	0	0	1	12581	465	17	3		3	PREPL	2	44566424	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	486512	44566424	198632949	108	135795											
FSHR	2492	broad.mit.edu	37	chr2	49195971	49195971	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggccctcagcttcttaagAttttctaagccatagctagg	8	11	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49195971	G	G	49195971	2	3	164	1	0	0	0	0	0	0	0	1	6133	330	12	5		5	FSHR	2	49195971	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	4629547	49195971	194003402	109	135796											
NRXN1	9378	broad.mit.edu	37	chr2	51206288	51206288	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatttaaaaccttgatatagCtaaaacacataacttacatg	3	7	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51206288	G	G	51206288	1	3	164	0	1	0	0	0	0	0	0	0	10760	812	28	4		4	NRXN1	2	51206288	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2010317	51206288	191993085	110	135797											
PAPOLG	64895	broad.mit.edu	37	chr2	60998766	60998766	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtattcgcagcttaaatgGtaagcttctaaaaagaaatc	8	6	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60998766	T	T	60998766	5	4	164	1	0	0	0	0	0	0	1	0	11525	1275	44	3	631	3	PAPOLG	2	60998766	Splice_Site	SNP	G	TCGA-50-5941-01A-11D-1753-08	9792478	60998766	182200607	111	135798											
REL	5966	broad.mit.edu	37	chr2	61149634	61149634	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtatgcaaaatgagcaattGagtgactcctttccatatga	8	7	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61149634	C	C	61149634	3	2	164	1	0	0	0	0	1	0	0	0	13323	1281	45	4	1866	4	REL	2	61149634	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	150868	61149634	182049739	112	135799											
ANXA4	307	broad.mit.edu	37	chr2	70035165	70035165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccctggctgaggtttcGctgtgattagagaatgaggg	17	6	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70035165	T	T	70035165	1	4	164	0	1	0	0	0	0	0	0	0	720	1102	38	3		3	ANXA4	2	70035165	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	8885531	70035165	173164208	113	135800											
CYP26B1	56603	broad.mit.edu	37	chr2	72360201	72360201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagccgccggaaatgggcGtgaacaggcgcatgacctcc	15	12	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72360201	T	T	72360201	3	4	164	1	0	0	0	0	1	0	0	0	4189	1145	40	3	449	3	CYP26B1	2	72360201	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2325036	72360201	170839172	114	135801											
ALMS1	7840	broad.mit.edu	37	chr2	73717864	73717864	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttgcatttttcttgaacaAcgagaactctttgaacagtg	7	8	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73717864	T	T	73717864	3	4	164	1	0	0	0	0	1	0	0	0	535	40	2	5	8813	5	ALMS1	2	73717864	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	1357663	73717864	169481509	115	135802											
REG3A	5068	broad.mit.edu	37	chr2	79385513	79385513	+	Frame_Shift_Del	DEL	A	-	-													tgttaccaatgctcttcaccAgggaggacacgaaggatccc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79385513	-	-	79385513	7	5	164	1	0	1	0	1	0	0	0	0	13320	188	7	0	267	0	REG3A	2	79385513	Frame_Shift_Del	DEL	A	TCGA-50-5941-01A-11D-1753-08	5667649	79385513	163813860	116	135803											
CTNNA2	1496	broad.mit.edu	37	chr2	80808895	80808895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgatgtgcgtagcaggaCaagtgttcagactgaggatg	14	5	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80808895	A	A	80808895	3	1	164	1	0	0	0	0	1	0	0	0	4047	478	17	3	1800	3	CTNNA2	2	80808895	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1423382	80808895	162390478	117	135804											
GGCX	2677	broad.mit.edu	37	chr2	85779914	85779914	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcattgccctatctcaaccCacataaaagatagttcaatc	4	12	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85779914	T	T	85779914	1	4	164	0	1	0	0	0	0	0	0	0	6420	609	21	4		4	GGCX	2	85779914	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4971019	85779914	157419459	118	135805											
PTCD3	55037	broad.mit.edu	37	chr2	86348591	86348591	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttctttatctttctgtctCttacccacaggaaccactgt	5	12	4	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86348591	G	G	86348591	1	3	164	0	1	0	0	0	0	0	0	0	12835	928	32	4		4	PTCD3	2	86348591	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	568677	86348591	156850782	119	135806											
SLC9A4	389015	broad.mit.edu	37	chr2	103148979	103148979	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtggagtaaggagggtGgccttaagacccaaacctct	14	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103148979	T	T	103148979	2	4	164	1	0	0	0	0	0	0	0	1	14830	1335	47	2		2	SLC9A4	2	103148979	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	16800388	103148979	140050394	120	135807											
RANBP2	5903	broad.mit.edu	37	chr2	109380702	109380702	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattcgccttctaatgagacGagagcaagtattgaaaatct	8	7	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109380702	T	T	109380702	3	4	164	1	0	0	0	0	1	0	0	0	13136	1058	37	3	3785	3	RANBP2	2	109380702	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	6231723	109380702	133818671	121	135808											
RANBP2	5903	broad.mit.edu	37	chr2	109382540	109382540	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtaatttctcagaaaaaGcttctaagtttggcaataca	6	6	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109382540	A	A	109382540	3	1	164	1	0	0	0	0	1	0	0	0	13136	971	34	4	5623	4	RANBP2	2	109382540	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1838	109382540	133816833	122	135809											
IL1F8	27177	broad.mit.edu	37	chr2	113786740	113786740	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggtagggaatagtgaCaggctcctcccattagccat	10	13	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113786740	T	T	113786740	1	4	164	0	1	0	0	0	0	0	0	0	7726	493	17	4		4	IL1F8	2	113786740	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4404200	113786740	129412633	123	135810											
DPP10	57628	broad.mit.edu	37	chr2	116573173	116573173	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattagctattgttttgtaTgtatgcatgccaactatata	6	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116573173	G	G	116573173	1	3	164	0	1	0	0	0	0	0	0	0	4767	1479	51	5		5	DPP10	2	116573173	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	2786433	116573173	126626200	124	135811											
GLI2	2736	broad.mit.edu	37	chr2	121726545	121726545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagctgggctgagggcccGgtggggaggcgctggctttt	20	9	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121726545	T	T	121726545	1	4	164	0	1	0	0	0	0	0	0	0	6502	1131	39	1		1	GLI2	2	121726545	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5153372	121726545	121472828	125	135812											
IWS1	55677	broad.mit.edu	37	chr2	128250758	128250758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttctggcaggctgtagCagagataacatataaaaaca	8	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128250758	A	A	128250758	1	1	164	0	1	0	0	0	0	0	0	0	8001	725	25	3		3	IWS1	2	128250758	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6524213	128250758	114948615	126	135813											
UGGT1	56886	broad.mit.edu	37	chr2	128941255	128941255	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctttattcagtgcactAtatgttgtggatctgaagaa	8	6	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128941255	G	G	128941255	2	3	164	1	0	0	0	0	0	0	0	1	17067	436	16	5		5	UGGT1	2	128941255	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	690497	128941255	114258118	127	135814											
CCDC74B	91409	broad.mit.edu	37	chr2	130898003	130898003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcgtctaaccacccacCcagcatacctccccaggcag	8	18	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130898003	A	A	130898003	1	1	164	0	1	0	0	0	0	0	0	0	2876	638	22	2		2	CCDC74B	2	130898003	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1956748	130898003	112301370	128	135815											
FAM168B	130074	broad.mit.edu	37	chr2	131813266	131813266	+	Frame_Shift_Del	DEL	A	-	-													gtaaggtgtgccaggagtgtAacctggaacaaagaaggcaa							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131813266	-	-	131813266	7	5	164	1	0	1	0	1	0	0	0	0	5531	362	13	0	442	0	FAM168B	2	131813266	Frame_Shift_Del	DEL	A	TCGA-50-5941-01A-11D-1753-08	915263	131813266	111386107	129	135816											
PLEKHB2	55041	broad.mit.edu	37	chr2	131904333	131904333	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catggccttagggtctctatTttgggtcttctaggggcctc	12	10	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131904333	C	C	131904333	3	2	164	1	0	0	0	0	1	0	0	0	12160	1841	64	5	682	5	PLEKHB2	2	131904333	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	91067	131904333	111295040	130	135817											
LCT	3938	broad.mit.edu	37	chr2	136567022	136567022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccttcaaagctcggagCatattcagatcggcatccag	8	12	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136567022	A	A	136567022	3	1	164	1	0	0	0	0	1	0	0	0	8765	710	25	3	2928	3	LCT	2	136567022	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4662689	136567022	106632351	131	135818											
THSD7B	80731	broad.mit.edu	37	chr2	137814464	137814464	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcagcatagaactcgcgCggtcatagctccccctctct	8	15	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137814464	T	T	137814464	3	4	164	1	0	0	0	0	1	0	0	0	16003	768	27	4	527	4	THSD7B	2	137814464	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1247442	137814464	105384909	132	135819											
LRP1B	53353	broad.mit.edu	37	chr2	140997093	140997094	+	Frame_Shift_Ins	INS	-	A	A													acgagaggcacaatgatggcINSaatgcttcctggaaaataaa							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140997094	A	A	140997093	7	5	164	1	0	1	1	0	0	0	0	0	9042	710	25	0	482	0	LRP1B	2	140997093	Frame_Shift_Ins	INS	-	TCGA-50-5941-01A-11D-1753-08	3182629	140997093	102202280	133	135820											
LRP1B	53353	broad.mit.edu	37	chr2	141055259	141055259	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataattgttggagtgacagAgactgaacctgaaaaataga	10	4	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141055259	T	T	141055259	1	4	164	0	1	0	0	0	0	0	0	0	9042	319	11	5		5	LRP1B	2	141055259	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	58166	141055259	102144114	134	135821											
LRP1B	53353	broad.mit.edu	37	chr2	141571402	141571402	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattttacaacttaaacAtaatgatagccacttaaatt	2	6	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141571402	T	T	141571402	1	4	164	0	1	0	0	0	0	0	0	0	9042	232	8	5		5	LRP1B	2	141571402	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	516143	141571402	101627971	135	135822											
LRP1B	53353	broad.mit.edu	37	chr2	141747165	141747165	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagctccatcacaaagccaTctcttggggatgcagcgatt	9	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141747165	A	A	141747165	3	1	164	1	0	0	0	0	1	0	0	0	9042	1432	50	5	11393	5	LRP1B	2	141747165	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	175763	141747165	101452208	136	135823											
LRP1B	53353	broad.mit.edu	37	chr2	141806572	141806573	+	Frame_Shift_Del	DEL	TC	-	-													taccatctttcaggatggttTctctctctgtgccatctatc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141806573	-	-	141806572	7	5	164	1	0	1	0	1	0	0	0	0	9042	1783	62	0	12351	0	LRP1B	2	141806572	Frame_Shift_Del	DEL	TC	TCGA-50-5941-01A-11D-1753-08	59407	141806572	101392801	137	135824											
NEB	4703	broad.mit.edu	37	chr2	152472566	152472566	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcttggattggaatggcatCcagacgcaagtcatagcctt	11	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152472566	G	G	152472566	3	3	164	1	0	0	0	0	1	0	0	0	10397	855	30	4	14875	4	NEB	2	152472566	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	10665994	152472566	90726807	138	135825											
GALNT13	114805	broad.mit.edu	37	chr2	154801049	154801049	+	Frame_Shift_Del	DEL	T	-	-													tgcaaggtggttctagccacTtcgctgatgtgggttcttgt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154801049	-	-	154801049	7	5	164	1	0	1	0	1	0	0	0	0	6273	1596	56	0	41	0	GALNT13	2	154801049	Frame_Shift_Del	DEL	T	TCGA-50-5941-01A-11D-1753-08	2328483	154801049	88398324	139	135826											
KCNJ3	3760	broad.mit.edu	37	chr2	155555301	155555301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgtattatgtctgcactccGaaggaaatttggggacgatt	11	7	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155555301	T	T	155555301	3	4	164	1	0	0	0	0	1	0	0	0	8122	1058	37	3	16	3	KCNJ3	2	155555301	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	754252	155555301	87644072	140	135827											
LY75	4065	broad.mit.edu	37	chr2	160755507	160755507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagtcgtctgctactatcCagccatacactggcttgatg	8	13	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160755507	A	A	160755507	3	1	164	1	0	0	0	0	1	0	0	0	9187	595	21	2	5146	2	LY75	2	160755507	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5200206	160755507	82443866	141	135828											
ITGB6	3694	broad.mit.edu	37	chr2	160958301	160958301	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctgtgtttataagttacAtttttaaaagtacttgtgga	7	5	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160958301	G	G	160958301	2	3	164	1	0	0	0	0	0	0	0	1	7969	214	8	5		5	ITGB6	2	160958301	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	202794	160958301	82241072	142	135829											
SCN3A	6328	broad.mit.edu	37	chr2	165946747	165946747	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttgtctggttttgttacActatcataggaaggaggaga	11	6	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165946747	C	C	165946747	3	2	164	1	0	0	0	0	1	0	0	0	14031	156	6	5	90	5	SCN3A	2	165946747	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	4988446	165946747	77252626	143	135830											
CSRNP3	80034	broad.mit.edu	37	chr2	166451759	166451759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaccgaagtcaattgtctGgttctacagcaaaactaatt	7	8	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166451759	T	T	166451759	1	4	164	0	1	0	0	0	0	0	0	0	3999	1363	47	2		2	CSRNP3	2	166451759	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	505012	166451759	76747614	144	135831											
XIRP2	129446	broad.mit.edu	37	chr2	168102059	168102059	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagaagggagatgttagttCtgtcagatacagatttgaaa	11	4	3	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168102059	G	G	168102059	3	3	164	1	0	0	0	0	1	0	0	0	17557	913	32	4	4187	4	XIRP2	2	168102059	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1650300	168102059	75097314	145	135832											
XIRP2	129446	broad.mit.edu	37	chr2	168114688	168114688	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttggcctccttccaaggaGatccctaagaaaaccttacc	6	13	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168114688	A	A	168114688	1	1	164	0	1	0	0	0	0	0	0	0	17557	933	33	4		4	XIRP2	2	168114688	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	12629	168114688	75084685	146	135833											
LRP2	4036	broad.mit.edu	37	chr2	170065919	170065919	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctagcataaaataagatGacagagatgcaaacatatta	6	5	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170065919	A	A	170065919	1	1	164	0	1	0	0	0	0	0	0	0	9043	1305	45	4		4	LRP2	2	170065919	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1951231	170065919	73133454	147	135834											
TTN	7273	broad.mit.edu	37	chr2	179499398	179499398	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcttttcagaatgcacAgggaagtgaaataaagttga	12	4	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179499398	G	G	179499398	1	3	164	0	1	0	0	0	0	0	0	0	16861	203	7	5		5	TTN	2	179499398	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	9433479	179499398	63699975	148	135835											
TTN	7273	broad.mit.edu	37	chr2	179590390	179590390	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggttctgaacaggaaaaGatggatggaaattgttgaaa	14	2	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179590390	T	T	179590390	1	4	164	0	1	0	0	0	0	0	0	0	16861	957	33	3		3	TTN	2	179590390	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	90992	179590390	63608983	149	135836											
TTN	7273	broad.mit.edu	37	chr2	179614245	179614245	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacatttgtccagggagtAaagggaccagctggataatc	11	7	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179614245	G	G	179614245	2	3	164	1	0	0	0	0	0	0	0	1	16861	359	13	5		5	TTN	2	179614245	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	23855	179614245	63585128	150	135837											
TTN	7273	broad.mit.edu	37	chr2	179632810	179632810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggttcagaaacttcaCattcaaacatggctcgcttc	7	11	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179632810	A	A	179632810	3	1	164	1	0	0	0	0	1	0	0	0	16861	478	17	3	102048	3	TTN	2	179632810	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	18565	179632810	63566563	151	135838											
CCDC141	285025	broad.mit.edu	37	chr2	179736949	179736949	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgccagccgaaggaggcTaagttcttcccgttctgctt	10	13	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179736949	C	C	179736949	3	2	164	1	0	0	0	0	1	0	0	0	2801	1522	53	5	2406	5	CCDC141	2	179736949	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	104139	179736949	63462424	152	135839											
ITGA4	3676	broad.mit.edu	37	chr2	182395540	182395540	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatggttggaaagttgagaTagacccagggtctatcccat	12	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182395540	C	C	182395540	1	2	164	0	1	0	0	0	0	0	0	0	7948	1421	49	5		5	ITGA4	2	182395540	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	2658591	182395540	60803833	153	135840											
COL3A1	1281	broad.mit.edu	37	chr2	189870935	189870935	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcattttttaatcagggaAaccctggatcagatggtctt	8	8	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189870935	T	T	189870935	3	4	164	1	0	0	0	0	1	0	0	0	3720	14	1	5	3209	5	COL3A1	2	189870935	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	7475395	189870935	53328438	154	135841											
C2orf66	401027	broad.mit.edu	37	chr2	197674047	197674047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacacatagtagcaggagaGgtgctctggtcatggtggag	15	7	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197674047	T	T	197674047	3	4	164	1	0	0	0	0	1	0	0	0	2207	1000	35	2	296	2	C2orf66	2	197674047	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	7803112	197674047	45525326	155	135842											
C2orf67	151050	broad.mit.edu	37	chr2	210887823	210887823	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttgacctttcaacctgAtcctttttttcatcttgaca	5	11	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210887823	T	T	210887823	3	4	164	1	0	0	0	0	1	0	0	0	2208	330	12	5	153	5	C2orf67	2	210887823	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	13213776	210887823	32311550	156	135843											
CPS1	1373	broad.mit.edu	37	chr2	211466964	211466964	+	Frame_Shift_Del	DEL	C	-	-													gcagcagacaccattggctaCccagtgatgatccgttccgc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	211466964	-	-	211466964	7	5	164	1	0	1	0	1	0	0	0	0	3855	518	18	0	1830	0	CPS1	2	211466964	Frame_Shift_Del	DEL	C	TCGA-50-5941-01A-11D-1753-08	579141	211466964	31732409	157	135844											
C2orf24	27013	broad.mit.edu	37	chr2	220038064	220038064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccctatccttccgagcccCtcctcacctttaccagccgc	4	22	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220038064	A	A	220038064	1	1	164	0	1	0	0	0	0	0	0	0	2181	696	24	2		2	C2orf24	2	220038064	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	8571100	220038064	23161309	158	135845											
ATG9A	79065	broad.mit.edu	37	chr2	220085370	220085370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagggtacagtatctctGtgtgggggtggggcatatct	18	5	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220085370	T	T	220085370	1	4	164	0	1	0	0	0	0	0	0	0	1106	1392	48	3		3	ATG9A	2	220085370	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	47306	220085370	23114003	159	135846											
PTPRN	5798	broad.mit.edu	37	chr2	220161604	220161604	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcattggcatcgcgggacctCtgccactcagcctgagccag	11	15	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220161604	A	A	220161604	1	1	164	0	1	0	0	0	0	0	0	0	12915	928	32	3		3	PTPRN	2	220161604	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	76234	220161604	23037769	160	135847											
GMPPA	29926	broad.mit.edu	37	chr2	220366326	220366326	+	Intron	DEL	G	-	-													ttgtgcacacactcgtatatGggggggtggggatgccctag					rs111228471		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220366326	-	-	220366326	6	5	164	0	1	1	0	1	0	0	0	0	6558	1363	47	0		0	GMPPA	2	220366326	Intron	DEL	G	TCGA-50-5941-01A-11D-1753-08	204722	220366326	22833047	161	135848											
MRPL44	65080	broad.mit.edu	37	chr2	224831449	224831449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatccaaaagatgatctatCagagctattgtgttacttct	6	7	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224831449	T	T	224831449	1	4	164	0	1	0	0	0	0	0	0	0	9902	841	29	4		4	MRPL44	2	224831449	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4465123	224831449	18367924	162	135849											
TRIP12	9320	broad.mit.edu	37	chr2	230724103	230724103	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagggagattcagtatgctGaagtgcttttggtttttttg	13	3	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230724103	A	A	230724103	4	1	164	1	0	0	0	0	0	1	0	0	16681	1299	45	4	5848	4	TRIP12	2	230724103	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5892654	230724103	12475270	163	135850											
COL6A3	1293	broad.mit.edu	37	chr2	238249699	238249699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgtctaagatgaaagcCatgtcgatgtccacatcgct	10	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238249699	A	A	238249699	3	1	164	1	0	0	0	0	1	0	0	0	3733	594	21	2	1701	2	COL6A3	2	238249699	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	7525596	238249699	4949674	164	135851											
OR6B2	389090	broad.mit.edu	37	chr2	240969109	240969109	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatagaagacggtgaccacGgtgaggtgagaggcgcaggt	18	6	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240969109	T	T	240969109	2	4	164	1	0	0	0	0	0	0	0	1	11282	1103	39	1		1	OR6B2	2	240969109	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2719410	240969109	2230264	165	135852											
CAPN10	11132	broad.mit.edu	37	chr2	241533901	241533901	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttccccccagcctgccGgcaagttgacactaccagtt	9	16	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241533901	T	T	241533901	1	4	164	0	1	0	0	0	0	0	0	0	2649	1131	39	1		1	CAPN10	2	241533901	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	564792	241533901	1665472	166	135853											
CAPN10	11132	broad.mit.edu	37	chr2	241535790	241535790	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccatgccccccgtggctGgcaccgcgtgccatgcatac	11	17	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241535790	A	A	241535790	3	1	164	1	0	0	0	0	1	0	0	0	2649	1348	47	4	1363	4	CAPN10	2	241535790	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1889	241535790	1663583	167	135854											
KIF1A	547	broad.mit.edu	37	chr2	241656827	241656827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggagagcttggacctgCagaagagttgggagaggcgg	18	6	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241656827	A	A	241656827	1	1	164	0	1	0	0	0	0	0	0	0	8353	725	25	3		3	KIF1A	2	241656827	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	121037	241656827	1542546	168	135855											
GAL3ST2	64090	broad.mit.edu	37	chr2	242741367	242741367	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacctgggctacccctggctCttcctggcgcgctacgtgga	12	16	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242741367	A	A	242741367	2	1	164	1	0	0	0	0	0	0	0	1	6260	900	32	3		3	GAL3ST2	2	242741367	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	1084540	242741367	458006	169	135856											
CHL1	10752	broad.mit.edu	37	chr3	418044	418044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcaatggcccttgcccCatctccaaatgtactgattt	6	12	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	418044	A	A	418044	1	1	164	0	1	0	0	0	0	0	0	0	3380	609	21	2		2	CHL1	3	418044	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08		418044	197604386	170	135857											
RAD18	56852	broad.mit.edu	37	chr3	8955464	8955464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttttaatcactgtacaAtaattatttaagttgttaac	3	5	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8955464	G	G	8955464	1	3	164	0	1	0	0	0	0	0	0	0	13088	116	4	5		5	RAD18	3	8955464	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	8537420	8955464	189066966	171	135858											
FANCD2	2177	broad.mit.edu	37	chr3	10107090	10107090	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcagattggtgtctccGctgtgcctggctccgtattt	10	12	2	1	rs142144794		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10107090	T	T	10107090	2	4	164	1	0	0	0	0	0	0	0	1	5722	1074	38	3		3	FANCD2	3	10107090	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	1151626	10107090	187915340	172	135859											
C3orf20	84077	broad.mit.edu	37	chr3	14762972	14762972	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcatttactttttcagtGggcccccagggaaacctgga	10	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14762972	T	T	14762972	1	4	164	0	1	0	0	0	0	0	0	0	2235	1363	47	2		2	C3orf20	3	14762972	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4655882	14762972	183259458	173	135860											
BTD	686	broad.mit.edu	37	chr3	15677046	15677046	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagcgtggctgaccatcacGaggctgaatattatgtggct	13	8	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15677046	T	T	15677046	4	4	164	1	0	0	0	0	0	1	0	0	1560	1059	37	3	166	3	BTD	3	15677046	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	914074	15677046	182345384	174	135861											
CRTAP	10491	broad.mit.edu	37	chr3	33174052	33174052	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttcccaaccctagtgaacGacctgaagaatgcagccccc	7	16	1	3	rs111525897		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33174052	C	C	33174052	3	2	164	1	0	0	0	0	1	0	0	0	3930	1058	37	4	946	4	CRTAP	3	33174052	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	17497006	33174052	164848378	175	135862											
ARPP21	10777	broad.mit.edu	37	chr3	35781139	35781139	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgacctttatctttctatGtagaaaataaccagattcac	4	8	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35781139	A	A	35781139	1	1	164	0	1	0	0	0	0	0	0	0	982	1392	48	4		4	ARPP21	3	35781139	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2607087	35781139	162241291	176	135863											
SCN10A	6336	broad.mit.edu	37	chr3	38739040	38739040	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgcaacaaaaccttcatCtgggagtgatgcagcctcct	9	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38739040	T	T	38739040	3	4	164	1	0	0	0	0	1	0	0	0	14025	913	32	4	203	4	SCN10A	3	38739040	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2957901	38739040	159283390	177	135864											
SCN11A	11280	broad.mit.edu	37	chr3	38888217	38888217	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgcccttggccacccCaaagctagacaagtctccat	7	16	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38888217	T	T	38888217	3	4	164	1	0	0	0	0	1	0	0	0	14026	594	21	4	35	4	SCN11A	3	38888217	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	149177	38888217	159134213	178	135865											
EIF1B	10289	broad.mit.edu	37	chr3	40352529	40352529	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattatgacaaaaagaaactTgtgaaagctttcaaaaaggt	8	4	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40352529	A	A	40352529	2	1	164	1	0	0	0	0	0	0	0	1	5034	1799	63	5		5	EIF1B	3	40352529	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	1464312	40352529	157669901	179	135866											
SETD2	29072	broad.mit.edu	37	chr3	47164413	47164414	+	Frame_Shift_Ins	INS	-	C	C													attctgtacaacagaaagaaINStttttaaatttatcagactt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47164414	C	C	47164413	7	5	164	1	0	1	1	0	0	0	0	0	14244	98	4	0	6057	0	SETD2	3	47164413	Frame_Shift_Ins	INS	-	TCGA-50-5941-01A-11D-1753-08	6811884	47164413	150858017	180	135867											
CSPG5	10675	broad.mit.edu	37	chr3	47603999	47603999	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagagtttaacaaatgGttacaagaaatagactctgt	8	4	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47603999	C	C	47603999	1	2	164	0	1	0	0	0	0	0	0	0	3995	1276	44	4		4	CSPG5	3	47603999	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	439586	47603999	150418431	181	135868											
MAP4	4134	broad.mit.edu	37	chr3	47956349	47956349	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaggttgactgttgcatgGtttcctttcccctagttttt	9	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47956349	C	C	47956349	3	2	164	1	0	0	0	0	1	0	0	0	9350	1261	44	4	2908	4	MAP4	3	47956349	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	352350	47956349	150066081	182	135869											
COL7A1	1294	broad.mit.edu	37	chr3	48613229	48613229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggtgcgtcgccgcagccCctatgcctgtgggcaccact	14	16	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48613229	A	A	48613229	1	1	164	0	1	0	0	0	0	0	0	0	3736	638	22	2		2	COL7A1	3	48613229	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	656880	48613229	149409201	183	135870											
VPRBP	9730	broad.mit.edu	37	chr3	51455667	51455667	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatcctaaaagaaaaaggCgcaaggtgggtaaccacgta	10	10	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51455667	T	T	51455667	1	4	164	0	1	0	0	0	0	0	0	0	17312	783	27	4		4	VPRBP	3	51455667	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2842438	51455667	146566763	184	135871											
SFMBT1	51460	broad.mit.edu	37	chr3	52962181	52962181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagaagctctcaagtgaCaattcagaagacagcgaatg	11	7	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52962181	A	A	52962181	1	1	164	0	1	0	0	0	0	0	0	0	14270	493	17	3		3	SFMBT1	3	52962181	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1506514	52962181	145060249	185	135872											
CACNA2D3	55799	broad.mit.edu	37	chr3	54604170	54604170	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttctttgcacttgggttCatttgatcttttggtagtga	10	7	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54604170	A	A	54604170	1	1	164	0	1	0	0	0	0	0	0	0	2576	841	29	3		3	CACNA2D3	3	54604170	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1641989	54604170	143418260	186	135873											
FLNB	2317	broad.mit.edu	37	chr3	58120479	58120479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgagatgccggggaaggcCtgcttgctgttcaaataacg	13	11	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58120479	A	A	58120479	3	1	164	1	0	0	0	0	1	0	0	0	5992	680	24	2	4854	2	FLNB	3	58120479	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3516309	58120479	139901951	187	135874											
ACOX2	8309	broad.mit.edu	37	chr3	58514714	58514714	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaccagaagatttagatCactacctgttgtgtccacct	7	10	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514714	A	A	58514714	1	1	164	0	1	0	0	0	0	0	0	0	159	841	29	3		3	ACOX2	3	58514714	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	394235	58514714	139507716	188	135875											
MAGI1	9223	broad.mit.edu	37	chr3	65342407	65342407	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccggagagacgtctcgtctCttctcgtgcttctccctcct	8	16	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65342407	G	G	65342407	3	3	164	1	0	0	0	0	1	0	0	0	9282	912	32	4	357	4	MAGI1	3	65342407	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	6827693	65342407	132680023	189	135876											
MAGI1	9223	broad.mit.edu	37	chr3	65365287	65365287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcccctccatcctgctGcccctccctccttccagcaa	5	22	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65365287	T	T	65365287	1	4	164	0	1	0	0	0	0	0	0	0	9282	1334	46	3		3	MAGI1	3	65365287	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	22880	65365287	132657143	190	135877											
PDZRN3	23024	broad.mit.edu	37	chr3	73433087	73433087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagctctggtagtgctggGcgtgcgccgggatgtgcgcg	19	9	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73433087	T	T	73433087	3	4	164	1	0	0	0	0	1	0	0	0	11803	1203	42	3	574	3	PDZRN3	3	73433087	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	8067800	73433087	124589343	191	135878											
CNTN3	5067	broad.mit.edu	37	chr3	74385598	74385598	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcatagtgtactgaacatTgtgaaacacatagttacttt	6	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74385598	A	A	74385598	1	1	164	0	1	0	0	0	0	0	0	0	3674	1827	63	5		5	CNTN3	3	74385598	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	952511	74385598	123636832	192	135879											
VGLL3	389136	broad.mit.edu	37	chr3	87017813	87017813	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgctgaggtagcagaGgtgactgtagttggttctgt	15	7	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87017813	A	A	87017813	2	1	164	1	0	0	0	0	0	0	0	1	17287	987	35	4		4	VGLL3	3	87017813	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	12632215	87017813	111004617	193	135880											
OR5H6	79295	broad.mit.edu	37	chr3	97983972	97983972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgggctctgcatctccgCaagcagatgaccaagatatg	10	11	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97983972	A	A	97983972	3	1	164	1	0	0	0	0	1	0	0	0	11257	711	25	3	846	3	OR5H6	3	97983972	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	10966159	97983972	100038458	194	135881											
OR5H6	79295	broad.mit.edu	37	chr3	97983997	97983997	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgaccaagatatgatggAgtctctattttacactgtca	8	7	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97983997	T	T	97983997	3	4	164	1	0	0	0	0	1	0	0	0	11257	304	11	5	871	5	OR5H6	3	97983997	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	25	97983997	100038433	195	135882											
IMPG2	50939	broad.mit.edu	37	chr3	100965004	100965004	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaagaaacatataaaaagTgattttaaataccacctatc	3	6	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100965004	A	A	100965004	1	1	164	0	1	0	0	0	0	0	0	0	7799	1711	59	5		5	IMPG2	3	100965004	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	2981007	100965004	97057426	196	135883											
FAM55C	91775	broad.mit.edu	37	chr3	101540808	101540808	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaaacctagcctgtcttgGaagggactggaggaatcata	13	7	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101540808	T	T	101540808	1	4	164	0	1	0	0	0	0	0	0	0	5637	1189	41	3		3	FAM55C	3	101540808	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	575804	101540808	96481622	197	135884											
DPPA4	55211	broad.mit.edu	37	chr3	109049664	109049664	+	Intron	DEL	A	-	-													ctgtgctaggaaaatcctacAaaaagggttaaataataaag					rs35734174		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109049664	-	-	109049664	6	5	164	0	1	1	0	1	0	0	0	0	4776	145	5	0		0	DPPA4	3	109049664	Intron	DEL	A	TCGA-50-5941-01A-11D-1753-08	7508856	109049664	88972766	198	135885											
ZBTB20	26137	broad.mit.edu	37	chr3	114069321	114069321	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcacaaactgggtctgcTggcctgccaggggctgtggc	15	12	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114069321	A	A	114069321	3	1	164	1	0	0	0	0	1	0	0	0	17655	1580	55	5	629	5	ZBTB20	3	114069321	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	5019657	114069321	83953109	199	135886											
LRRC58	116064	broad.mit.edu	37	chr3	120053875	120053875	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctaacaaaacgaacaacCaatggatttcctcgtaaact	4	11	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120053875	T	T	120053875	2	4	164	1	0	0	0	0	0	0	0	1	9101	593	21	4		4	LRRC58	3	120053875	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	5984554	120053875	77968555	200	135887											
STXBP5L	9515	broad.mit.edu	37	chr3	121137243	121137243	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcaacacattcctggaccaGgtagtatagaagggatgaaa	11	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121137243	C	C	121137243	3	2	164	1	0	0	0	0	1	0	0	0	15475	1000	35	4	3460	4	STXBP5L	3	121137243	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1083368	121137243	76885187	201	135888											
POLQ	10721	broad.mit.edu	37	chr3	121217437	121217437	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actagctctgccacccttttCattgaagttggcaacttctc	6	13	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121217437	T	T	121217437	3	4	164	1	0	0	0	0	1	0	0	0	12303	826	29	4	5804	4	POLQ	3	121217437	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	80194	121217437	76804993	202	135889											
PLXNA1	5361	broad.mit.edu	37	chr3	126751210	126751210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggcctatctgagcagcGcctggactctcgcctgcagc	12	15	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126751210	T	T	126751210	1	4	164	0	1	0	0	0	0	0	0	0	12214	1102	38	3		3	PLXNA1	3	126751210	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5533773	126751210	71271220	203	135890											
CLSTN2	64084	broad.mit.edu	37	chr3	140122658	140122658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgagacagcctggaaaaaGtcacacaagtgagtggcctg	12	10	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140122658	T	T	140122658	3	4	164	1	0	0	0	0	1	0	0	0	3594	1020	36	3	430	3	CLSTN2	3	140122658	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	13371448	140122658	57899772	204	135891											
ACPL2	92370	broad.mit.edu	37	chr3	141006085	141006085	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatacacgtgggatttggctCgctgaagctggaaactgttt	13	7	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141006085	T	T	141006085	1	4	164	0	1	0	0	0	0	0	0	0	166	899	31	4		4	ACPL2	3	141006085	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	883427	141006085	57016345	205	135892											
XRN1	54464	broad.mit.edu	37	chr3	142123810	142123810	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagaaggatagataaactCtgtgtctctatcataccagc	9	8	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142123810	T	T	142123810	3	4	164	1	0	0	0	0	1	0	0	0	17586	922	32	4	3406	4	XRN1	3	142123810	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1117725	142123810	55898620	206	135893											
USP13	8975	broad.mit.edu	37	chr3	179501817	179501817	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgacttaaatccatcaaatGcttctgtcttattttcagat	4	9	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179501817	C	C	179501817	1	2	164	0	1	0	0	0	0	0	0	0	17170	1334	46	4		4	USP13	3	179501817	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	37378007	179501817	18520613	207	135894											
TTC14	151613	broad.mit.edu	37	chr3	180320033	180320033	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcccgtcggcctccgggCcctgcattctctagccatgg	11	17	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180320033	T	T	180320033	1	4	164	0	1	0	0	0	0	0	0	0	16807	754	26	4		4	TTC14	3	180320033	5'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	818216	180320033	17702397	208	135895											
EHHADH	1962	broad.mit.edu	37	chr3	184910894	184910894	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagctggcgaaaagaagtggGtgccaatgaccaagtgagga	16	6	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184910894	C	C	184910894	3	2	164	1	0	0	0	0	1	0	0	0	5022	1261	44	4	883	4	EHHADH	3	184910894	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4590861	184910894	13111536	209	135896											
HRG	3273	broad.mit.edu	37	chr3	186395691	186395691	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtgattcctttgaagAggaaaatgaataatacattg	8	3	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186395691	G	G	186395691	1	3	164	0	1	0	0	0	0	0	0	0	7421	319	11	5		5	HRG	3	186395691	3'UTR	SNP	A	TCGA-50-5941-01A-11D-1753-08	1484797	186395691	11626739	210	135897											
MASP1	5648	broad.mit.edu	37	chr3	186953545	186953545	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acacccagtccacgtaattgGagacctttgtgtagactcca	8	12	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186953545	T	T	186953545	1	4	164	0	1	0	0	0	0	0	0	0	9414	1174	41	3		3	MASP1	3	186953545	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	557854	186953545	11068885	211	135898											
TP63	8626	broad.mit.edu	37	chr3	189604442	189604442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaagctaaatgagagacaCagtgggacagatcagatcaa	10	7	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189604442	A	A	189604442	1	1	164	0	1	0	0	0	0	0	0	0	16516	493	17	3		3	TP63	3	189604442	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2650897	189604442	8417988	212	135899											
PPARGC1A	10891	broad.mit.edu	37	chr4	23833297	23833297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaaatgagggcaatccGtcttcatccacagggagact	10	11	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23833297	T	T	23833297	3	4	164	1	0	0	0	0	1	0	0	0	12396	1136	40	3	2128	3	PPARGC1A	4	23833297	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08		23833297	167320979	213	135900											
TMEM156	80008	broad.mit.edu	37	chr4	39000506	39000506	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agattgcaaacacacttccaGacatgatagctccaatgttc	6	11	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39000506	C	C	39000506	3	2	164	1	0	0	0	0	1	0	0	0	16196	933	33	4	798	4	TMEM156	4	39000506	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	15167209	39000506	152153770	214	135901											
CORIN	10699	broad.mit.edu	37	chr4	47765481	47765481	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atagcaactgaggcgatggaGatatgtgaaaaacttgagga	13	4	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47765481	T	T	47765481	3	4	164	1	0	0	0	0	1	0	0	0	3784	942	33	3	2672	3	CORIN	4	47765481	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	8764975	47765481	143388795	215	135902											
CORIN	10699	broad.mit.edu	37	chr4	47840020	47840020	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatcttggtcgcttttctCtcctctacgtgtcccccggg	8	14	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47840020	T	T	47840020	1	4	164	0	1	0	0	0	0	0	0	0	3784	928	32	4		4	CORIN	4	47840020	5'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	74539	47840020	143314256	216	135903											
NFXL1	152518	broad.mit.edu	37	chr4	47900034	47900034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcgaggacattctccaCaagcaccaacatggcaaact	7	13	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47900034	A	A	47900034	3	1	164	1	0	0	0	0	1	0	0	0	10483	478	17	3	1641	3	NFXL1	4	47900034	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	60014	47900034	143254242	217	135904											
FRYL	285527	broad.mit.edu	37	chr4	48564827	48564827	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaaatactattatcagtaTgctttaatagcaagactaaa	5	6	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48564827	C	C	48564827	1	2	164	0	1	0	0	0	0	0	0	0	6124	1479	51	5		5	FRYL	4	48564827	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	664793	48564827	142589449	218	135905											
CWH43	80157	broad.mit.edu	37	chr4	48993685	48993685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccaggttatagtttttaCcttccatatggctttgtcaa	7	8	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48993685	A	A	48993685	1	1	164	0	1	0	0	0	0	0	0	0	4106	522	18	3		3	CWH43	4	48993685	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	428858	48993685	142160591	219	135906											
SPATA18	132671	broad.mit.edu	37	chr4	52926965	52926965	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaggacgtaatgatggtGtggaaacaatcaagtcacgc	13	6	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52926965	T	T	52926965	3	4	164	1	0	0	0	0	1	0	0	0	15119	1377	48	3	221	3	SPATA18	4	52926965	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3933280	52926965	138227311	220	135907											
LPHN3	23284	broad.mit.edu	37	chr4	62445436	62445436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaacatctgaatttcatGcttttcttttgacctcagaa	4	8	4	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62445436	T	T	62445436	1	4	164	0	1	0	0	0	0	0	0	0	9004	1334	46	3		3	LPHN3	4	62445436	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	9518471	62445436	128708840	221	135908											
LPHN3	23284	broad.mit.edu	37	chr4	62449493	62449493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccaatttattcagcagaTatctattacacacctaatag	3	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62449493	A	A	62449493	1	1	164	0	1	0	0	0	0	0	0	0	9004	1421	49	5		5	LPHN3	4	62449493	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	4057	62449493	128704783	222	135909											
STAP1	26228	broad.mit.edu	37	chr4	68471961	68471961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgaaaataaagaaccacCgttttctacaatattggttc	5	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68471961	A	A	68471961	1	1	164	0	1	0	0	0	0	0	0	0	15370	667	23	1		1	STAP1	4	68471961	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6022468	68471961	122682315	223	135910											
UBA6	55236	broad.mit.edu	37	chr4	68504691	68504691	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcctggcttccacattaTctaatgctgtaataattaca	4	10	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68504691	C	C	68504691	3	2	164	1	0	0	0	0	1	0	0	0	16958	1435	50	5	1512	5	UBA6	4	68504691	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	32730	68504691	122649585	224	135911											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68925001	68925002	+	Intron	DNP	GG	TT	TT													caaactcagaaatagctaatGgaaactttcctcataaactt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	68925002	TT	TT	68925001	1	4	164	0	1	0	0	0	0	0	0	0	16366	1363	47	2		2	TMPRSS11F	4	68925001	Intron	DNP	GG	TCGA-50-5941-01A-11D-1753-08	420310	68925001	122229275	225	135912											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68938203	68938203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccacaccttgttcatctgGactgaagaacaaaaaagcag	7	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68938203	T	T	68938203	3	4	164	1	0	0	0	0	1	0	0	0	16366	1188	41	3	988	3	TMPRSS11F	4	68938203	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	13202	68938203	122216073	226	135913											
UGT2B28	54490	broad.mit.edu	37	chr4	70148399	70148399	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaaacatactttcgttgGttttattttgttggcttcga	9	5	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70148399	A	A	70148399	1	1	164	0	1	0	0	0	0	0	0	0	17086	1276	44	4		4	UGT2B28	4	70148399	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1210196	70148399	121005877	227	135914											
ODAM	54959	broad.mit.edu	37	chr4	71064274	71064274	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtcaagcatacatttttAtataattcttttttttggca	4	5	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71064274	G	G	71064274	1	3	164	0	1	0	0	0	0	0	0	0	10919	464	16	5		5	ODAM	4	71064274	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	915875	71064274	120090002	228	135915											
AFP	174	broad.mit.edu	37	chr4	74301971	74301971	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgccaataacaaaataaCtagcaaccatgaagtgggtg	8	9	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74301971	A	A	74301971	1	1	164	0	1	0	0	0	0	0	0	0	363	580	20	3		3	AFP	4	74301971	5'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	3237697	74301971	116852305	229	135916											
PPEF2	5470	broad.mit.edu	37	chr4	76794229	76794229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccaggcctgagcccttcGgactactttggtgacacaca	9	14	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76794229	T	T	76794229	1	4	164	0	1	0	0	0	0	0	0	0	12404	1131	39	1		1	PPEF2	4	76794229	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2492258	76794229	114360047	230	135917											
WDFY3	23001	broad.mit.edu	37	chr4	85750188	85750188	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacaaagaaaattatatcCttgccatatccgaaaatcat	3	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85750188	A	A	85750188	4	1	164	1	0	0	0	0	0	1	0	0	17397	690	24	2	9938	2	WDFY3	4	85750188	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	8955959	85750188	105404088	231	135918											
GRID2	2895	broad.mit.edu	37	chr4	94690466	94690466	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtggacacaaagcagaaAggaggcgccctggacataaa	12	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94690466	T	T	94690466	3	4	164	1	0	0	0	0	1	0	0	0	6838	69	3	5	2524	5	GRID2	4	94690466	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	8940278	94690466	96463810	232	135919											
UNC5C	8633	broad.mit.edu	37	chr4	96124011	96124011	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtggtggaatgtcctacCagggcgtaggtgctgaggtt	17	6	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96124011	A	A	96124011	2	1	164	1	0	0	0	0	0	0	0	1	17119	581	21	2		2	UNC5C	4	96124011	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	1433545	96124011	95030265	233	135920											
ANK2	287	broad.mit.edu	37	chr4	113748530	113748530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagatacagcatagagatGctaatctcacagctcttgca	7	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113748530	T	T	113748530	1	4	164	0	1	0	0	0	0	0	0	0	621	1334	46	3		3	ANK2	4	113748530	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	17624519	113748530	77405746	234	135921											
NDST4	64579	broad.mit.edu	37	chr4	115997569	115997569	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggcctttctcaaccttGggggctttggtaatatgcag	13	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115997569	T	T	115997569	2	4	164	1	0	0	0	0	0	0	0	1	10353	1335	47	2		2	NDST4	4	115997569	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2249039	115997569	75156707	235	135922											
INTU	27152	broad.mit.edu	37	chr4	128564978	128564978	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcagtccaatcagaagaCaggagtcattgtccaacagc	9	11	3	2	rs147508682		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128564978	T	T	128564978	3	4	164	1	0	0	0	0	1	0	0	0	7856	478	17	4	455	4	INTU	4	128564978	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	12567409	128564978	62589298	236	135923											
LRBA	987	broad.mit.edu	37	chr4	151271106	151271106	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccttctagtttaaatataCctgactataagttgctttct	4	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151271106	G	G	151271106	1	3	164	0	1	0	0	0	0	0	0	0	9018	522	18	4		4	LRBA	4	151271106	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	22706128	151271106	39883170	237	135924											
FGB	2244	broad.mit.edu	37	chr4	155489541	155489541	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttacatttgcagaatgtgagGaaattatcaggaaaggaggt	12	3	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155489541	A	A	155489541	3	1	164	1	0	0	0	0	1	0	0	0	5888	1175	41	4	745	4	FGB	4	155489541	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4218435	155489541	35664735	238	135925											
RXFP1	59350	broad.mit.edu	37	chr4	159566335	159566335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgtagttttgaaatataCaaaagctttattattagaaa	5	2	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159566335	A	A	159566335	1	1	164	0	1	0	0	0	0	0	0	0	13870	493	17	3		3	RXFP1	4	159566335	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4076794	159566335	31587941	239	135926											
TRIM60	166655	broad.mit.edu	37	chr4	165962701	165962701	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagccagtaaatttaatctCatttctggactctttaagtt	5	7	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165962701	T	T	165962701	1	4	164	0	1	0	0	0	0	0	0	0	16660	841	29	4		4	TRIM60	4	165962701	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	6396366	165962701	25191575	240	135927											
SAP30	8819	broad.mit.edu	37	chr4	174292240	174292240	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccgctgtctaacttggtGtgcagagtgaattgccgctg	14	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174292240	T	T	174292240	1	4	164	0	1	0	0	0	0	0	0	0	13945	1392	48	3		3	SAP30	4	174292240	5'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	8329539	174292240	16862036	241	135928											
NSUN2	54888	broad.mit.edu	37	chr5	6605242	6605242	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagtcaacagctctgaaatCaaagggcaggctcagggacc	11	11	5	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6605242	A	A	6605242	1	1	164	0	1	0	0	0	0	0	0	0	10773	841	29	3		3	NSUN2	5	6605242	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08		6605242	174310018	242	135929											
SEMA5A	9037	broad.mit.edu	37	chr5	9054132	9054133	+	Intron	DNP	CC	AA	AA													atgcagtatcatcaattacaCcatttatccattaaggaaag							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	9054133	AA	AA	9054132	1	1	164	0	1	0	0	0	0	0	0	0	14150	522	18	3		3	SEMA5A	5	9054132	Intron	DNP	CC	TCGA-50-5941-01A-11D-1753-08	2448890	9054132	171861128	243	135930											
SEMA5A	9037	broad.mit.edu	37	chr5	9066421	9066421	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcattgttttcaaggctgcTaagccataaataaccaaaaa	5	8	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9066421	A	A	9066421	1	1	164	0	1	0	0	0	0	0	0	0	14150	1537	53	5		5	SEMA5A	5	9066421	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	12289	9066421	171848839	244	135931											
DNAH5	1767	broad.mit.edu	37	chr5	13923425	13923425	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgatggctttggaaggGtcagtcctgatgaagaacac	16	6	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13923425	A	A	13923425	2	1	164	1	0	0	0	0	0	0	0	1	4644	1252	44	4		4	DNAH5	5	13923425	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4857004	13923425	166991835	245	135932											
MYO10	4651	broad.mit.edu	37	chr5	16674949	16674949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagctcatctcccgtgcCcccatgctttaccttttcag	6	18	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16674949	A	A	16674949	1	1	164	0	1	0	0	0	0	0	0	0	10156	638	22	2		2	MYO10	5	16674949	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2751524	16674949	164240311	246	135933											
PRDM9	56979	broad.mit.edu	37	chr5	23517956	23517956	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagtgtttggaaacatttaCcaaccaaaccactgatttct	5	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23517956	G	G	23517956	1	3	164	0	1	0	0	0	0	0	0	0	12569	522	18	4		4	PRDM9	5	23517956	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6843007	23517956	157397304	247	135934											
CDH9	1007	broad.mit.edu	37	chr5	26881273	26881273	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcactatcatcacccccaTacatatcggcaagttttttg	6	12	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881273	A	A	26881273	3	1	164	1	0	0	0	0	1	0	0	0	3147	1406	49	5	31	5	CDH9	5	26881273	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	3363317	26881273	154033987	248	135935											
RNASEN	29102	broad.mit.edu	37	chr5	31526097	31526097	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaatcaagatgccctacTggatccttttggtttggttg	9	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31526097	C	C	31526097	1	2	164	0	1	0	0	0	0	0	0	0	13528	1595	55	5		5	RNASEN	5	31526097	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	4644824	31526097	149389163	249	135936											
TARS	6897	broad.mit.edu	37	chr5	33458624	33458624	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtatatatacacacaCgtatacgtgacgtacataaa	5	7	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33458624	T	T	33458624	1	4	164	0	1	0	0	0	0	0	0	0	15678	551	19	4		4	TARS	5	33458624	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1932527	33458624	147456636	250	135937											
SPEF2	79925	broad.mit.edu	37	chr5	35776410	35776410	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagacaaaagcattggctcTtcttgaagatttagtaacaa	7	6	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35776410	A	A	35776410	3	1	164	1	0	0	0	0	1	0	0	0	15153	1609	56	5	4265	5	SPEF2	5	35776410	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	2317786	35776410	145138850	251	135938											
CAPSL	133690	broad.mit.edu	37	chr5	35910451	35910451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaactcagcagatacactgaTtaatggggccacttactctt	7	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35910451	A	A	35910451	1	1	164	0	1	0	0	0	0	0	0	0	2665	1508	52	5		5	CAPSL	5	35910451	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	134041	35910451	145004809	252	135939											
EGFLAM	133584	broad.mit.edu	37	chr5	38458550	38458550	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgagcagtggtgggatgTggtgtccagttcccttgtag	16	7	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38458550	A	A	38458550	1	1	164	0	1	0	0	0	0	0	0	0	5006	1711	59	5		5	EGFLAM	5	38458550	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	2548099	38458550	142456710	253	135940											
C6	729	broad.mit.edu	37	chr5	41186174	41186174	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgctaggctgtcatacctCaaagccgacattttccagat	7	12	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41186174	G	G	41186174	3	3	164	1	0	0	0	0	1	0	0	0	2338	835	29	4	2132	4	C6	5	41186174	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2727624	41186174	139729086	254	135941											
OXCT1	5019	broad.mit.edu	37	chr5	41870398	41870398	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaccttgtaccaggttgcCccagatccgcgggcagaggc	12	13	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41870398	T	T	41870398	2	4	164	1	0	0	0	0	0	0	0	1	11423	610	22	4		4	OXCT1	5	41870398	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	684224	41870398	139044862	255	135942											
GHR	2690	broad.mit.edu	37	chr5	42629274	42629274	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagtgtaattaagctactatCctttctctattttatttggg	6	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42629274	A	A	42629274	1	1	164	0	1	0	0	0	0	0	0	0	6435	870	30	3		3	GHR	5	42629274	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	758876	42629274	138285986	256	135943											
GPBP1	65056	broad.mit.edu	37	chr5	56531911	56531911	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaatgttgatatttataGgtttcactttttgtgttttt	6	3	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56531911	A	A	56531911	1	1	164	0	1	0	0	0	0	0	0	0	6660	1015	35	4		4	GPBP1	5	56531911	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	13902637	56531911	124383349	257	135944											
ADAMTS6	11174	broad.mit.edu	37	chr5	64468799	64468799	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgctcttgcacagaacaaTccgatgcttgaatcctggac	8	12	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64468799	G	G	64468799	3	3	164	1	0	0	0	0	1	0	0	0	270	1435	50	5	418	5	ADAMTS6	5	64468799	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	7936888	64468799	116446461	258	135945											
SGTB	54557	broad.mit.edu	37	chr5	65008852	65008852	+	Frame_Shift_Del	DEL	G	-	-													ctgctaggtgtgtatcttctGggctgatcttaaaaactgtc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65008852	-	-	65008852	7	5	164	1	0	1	0	1	0	0	0	0	14339	1348	47	0	810	0	SGTB	5	65008852	Frame_Shift_Del	DEL	G	TCGA-50-5941-01A-11D-1753-08	540053	65008852	115906408	259	135946											
CCDC125	202243	broad.mit.edu	37	chr5	68629787	68629787	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcccctccggccagccaGgccccctcagatgagagctg	12	17	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68629787	T	T	68629787	1	4	164	0	1	0	0	0	0	0	0	0	2787	1015	35	2		2	CCDC125	5	68629787	5'Flank	SNP	G	TCGA-50-5941-01A-11D-1753-08	3620935	68629787	112285473	260	135947											
BDP1	55814	broad.mit.edu	37	chr5	70806102	70806102	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcctctaggtgaaatggaGacggatttgaaagcaactgg	13	6	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70806102	T	T	70806102	3	4	164	1	0	0	0	0	1	0	0	0	1400	933	33	3	3249	3	BDP1	5	70806102	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2176315	70806102	110109158	261	135948											
TMEM174	134288	broad.mit.edu	37	chr5	72469765	72469765	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgatctgtggctgtttggtCcatgaataaggtgttgggag	15	4	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72469765	A	A	72469765	1	1	164	0	1	0	0	0	0	0	0	0	16213	870	30	3		3	TMEM174	5	72469765	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1663663	72469765	108445495	262	135949											
GFM2	84340	broad.mit.edu	37	chr5	74055140	74055140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtccatcagaaaaaacCtgtaaattttcgtgacagtc	6	9	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74055140	A	A	74055140	1	1	164	0	1	0	0	0	0	0	0	0	6406	696	24	2		2	GFM2	5	74055140	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1585375	74055140	106860120	263	135950											
DHFR	1719	broad.mit.edu	37	chr5	79933673	79933673	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtagaacagaacattTgtttttatttaccaacaact	5	6	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79933673	A	A	79933673	1	1	164	0	1	0	0	0	0	0	0	0	4521	1827	63	5		5	DHFR	5	79933673	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	5878533	79933673	100981587	264	135951											
XRCC4	7518	broad.mit.edu	37	chr5	82499255	82499255	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaagtcagtgaaagcatAtgtgaaaataatctttaatt	6	5	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82499255	G	G	82499255	1	3	164	0	1	0	0	0	0	0	0	0	17582	464	16	5		5	XRCC4	5	82499255	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	2565582	82499255	98416005	265	135952											
VCAN	1462	broad.mit.edu	37	chr5	82779473	82779473	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtgctggaggatgaaatGgcaatgtggaatcactggaa	14	4	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82779473	A	A	82779473	1	1	164	0	1	0	0	0	0	0	0	0	17265	1363	47	4		4	VCAN	5	82779473	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	280218	82779473	98135787	266	135953											
DCP2	167227	broad.mit.edu	37	chr5	112312476	112312476	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgggacggaagtgagcgGgtcccgccccttccccttct	14	15	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112312476	T	T	112312476	1	4	164	0	1	0	0	0	0	0	0	0	4333	1247	43	2		2	DCP2	5	112312476	5'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	29533003	112312476	68602784	267	135954											
PRR16	51334	broad.mit.edu	37	chr5	120021828	120021828	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagcacacccgtctgctatCctcacggtcctgagaaagcc	8	17	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120021828	T	T	120021828	2	4	164	1	0	0	0	0	0	0	0	1	12695	845	30	4		4	PRR16	5	120021828	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	7709352	120021828	60893432	268	135955											
SNCAIP	9627	broad.mit.edu	37	chr5	121780446	121780446	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagtaagtggcctgttggttCcatgagaaccaagtctaact	11	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121780446	A	A	121780446	1	1	164	0	1	0	0	0	0	0	0	0	14955	870	30	3		3	SNCAIP	5	121780446	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1758618	121780446	59134814	269	135956											
FBN2	2201	broad.mit.edu	37	chr5	127686665	127686666	+	Missense_Mutation	DNP	GG	TT	TT													cacctcacagcggctgtcctGgatgttgagccaacaggtcc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	127686666	TT	TT	127686665	3	4	164	1	0	0	0	0	1	0	0	0	5760	1357	47	2	6211	2	FBN2	5	127686665	Missense_Mutation	DNP	GG	TCGA-50-5941-01A-11D-1753-08	5906219	127686665	53228595	270	135957											
ADAMTS19	171019	broad.mit.edu	37	chr5	128862031	128862031	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtggaagagggaaacgatAttcatacaaattacctcaag	9	6	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128862031	T	T	128862031	3	4	164	1	0	0	0	0	1	0	0	0	264	449	16	5	964	5	ADAMTS19	5	128862031	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	1175366	128862031	52053229	271	135958											
TRPC7	57113	broad.mit.edu	37	chr5	135549258	135549258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagaagctcatagcgcagGctggagatatcttgcttgat	11	8	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135549258	T	T	135549258	3	4	164	1	0	0	0	0	1	0	0	0	16709	1194	42	3	138	3	TRPC7	5	135549258	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	6687227	135549258	45366002	272	135959											
BRD8	10902	broad.mit.edu	37	chr5	137499603	137499603	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtttcatatgggaggcaCctgttgctatagtactccca	10	10	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137499603	T	T	137499603	1	4	164	0	1	0	0	0	0	0	0	0	1515	522	18	4		4	BRD8	5	137499603	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1950345	137499603	43415657	273	135960											
APBB3	10307	broad.mit.edu	37	chr5	139943781	139943781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgggcccctccgtgcacaCcatcgcagttgaccagaatg	10	16	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139943781	T	T	139943781	1	4	164	0	1	0	0	0	0	0	0	0	764	521	18	4		4	APBB3	5	139943781	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2444178	139943781	40971479	274	135961											
PCDHA4	56144	broad.mit.edu	37	chr5	140186910	140186910	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacacggcaccttcgtgggCcgcatcgcgcaggacctggg	14	14	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140186910	A	A	140186910	2	1	164	1	0	0	0	0	0	0	0	1	11620	726	26	3		3	PCDHA4	5	140186910	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	243129	140186910	40728350	275	135962											
PCDHA4	56144	broad.mit.edu	37	chr5	140189058	140189058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagggtgtgctctggtgaGggcccacccaagaccgacct	14	14	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140189058	T	T	140189058	3	4	164	1	0	0	0	0	1	0	0	0	11620	991	35	2	2288	2	PCDHA4	5	140189058	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2148	140189058	40726202	276	135963											
PCDHA11	56138	broad.mit.edu	37	chr5	140250586	140250586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgggcgagataagcacaaCgcgtgccctggacgaggcag	15	12	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140250586	A	A	140250586	3	1	164	1	0	0	0	0	1	0	0	0	11615	536	19	3	1900	3	PCDHA11	5	140250586	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	61528	140250586	40664674	277	135964											
PCDHB10	56126	broad.mit.edu	37	chr5	140573083	140573083	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcttacaaaataaatataCaggcaatggacggtggaggc	10	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140573083	G	G	140573083	3	3	164	1	0	0	0	0	1	0	0	0	11629	479	17	4	960	4	PCDHB10	5	140573083	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	322497	140573083	40342177	278	135965											
PCDHB12	56124	broad.mit.edu	37	chr5	140589623	140589623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggacaacggaaagatgGtttgttctatcccggaggac	14	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140589623	T	T	140589623	3	4	164	1	0	0	0	0	1	0	0	0	11631	1261	44	3	1146	3	PCDHB12	5	140589623	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	16540	140589623	40325637	279	135966											
PCDHGA8	9708	broad.mit.edu	37	chr5	140774087	140774087	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaccccgccctccccacAgacggttccactggcgtgga	10	18	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140774087	G	G	140774087	2	3	164	1	0	0	0	0	0	0	0	1	11654	175	7	5		5	PCDHGA8	5	140774087	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	184464	140774087	40141173	280	135967											
PPARGC1B	133522	broad.mit.edu	37	chr5	149215939	149215939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcctcccctcccctgagGgcctctcactcaaggccacc	7	21	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149215939	T	T	149215939	3	4	164	1	0	0	0	0	1	0	0	0	12397	1232	43	2	1958	2	PPARGC1B	5	149215939	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	8441852	149215939	31699321	281	135968											
HAVCR1	26762	broad.mit.edu	37	chr5	156469677	156469677	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggccatctgaagactctgtCacggtgtcattcccatctac	8	13	5	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156469677	A	A	156469677	2	1	164	1	0	0	0	0	0	0	0	1	7039	813	29	3		3	HAVCR1	5	156469677	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	7253738	156469677	24445583	282	135969											
FAM71B	153745	broad.mit.edu	37	chr5	156589905	156589905	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttctgattcttgtccccCgctctcctgcggtgactttc	8	15	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156589905	A	A	156589905	2	1	164	1	0	0	0	0	0	0	0	1	5659	639	23	1		1	FAM71B	5	156589905	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	120228	156589905	24325355	283	135970											
CYFIP2	26999	broad.mit.edu	37	chr5	156819862	156819862	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaagaagatggccgacCggatcaggaagtatcagatc	12	10	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156819862	T	T	156819862	3	4	164	1	0	0	0	0	1	0	0	0	4171	643	23	4	3734	4	CYFIP2	5	156819862	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	229957	156819862	24095398	284	135971											
ATP10B	23120	broad.mit.edu	37	chr5	160033812	160033812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcaacttgtctcgcaccagCttgactatcatactcttctg	6	14	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160033812	A	A	160033812	3	1	164	1	0	0	0	0	1	0	0	0	1121	796	28	3	1297	3	ATP10B	5	160033812	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3213950	160033812	20881448	285	135972											
GABRA1	2554	broad.mit.edu	37	chr5	161324499	161324499	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgttctcaacgcagtaattCccatctgctttattgcctct	5	12	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161324499	A	A	161324499	1	1	164	0	1	0	0	0	0	0	0	0	6220	870	30	3		3	GABRA1	5	161324499	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	1290687	161324499	19590761	286	135973											
GABRG2	2566	broad.mit.edu	37	chr5	161580234	161580234	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagttttttctgctgttttGaagattgtcgaacaggagct	10	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161580234	T	T	161580234	4	4	164	1	0	0	0	0	0	1	0	0	6232	1291	45	3	1450	3	GABRG2	5	161580234	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	255735	161580234	19335026	287	135974											
ODZ2	57451	broad.mit.edu	37	chr5	167625733	167625733	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttccagccccacctgtctgCctccaaagcccatggtctcc	7	19	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167625733	G	G	167625733	1	3	164	0	1	0	0	0	0	0	0	0	10930	754	26	4		4	ODZ2	5	167625733	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6045499	167625733	13289527	288	135975											
ODZ2	57451	broad.mit.edu	37	chr5	167642143	167642143	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaatctaccgcgtcaagtCtctgagtggaaccaaagacc	10	11	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167642143	A	A	167642143	3	1	164	1	0	0	0	0	1	0	0	0	10930	913	32	3	3999	3	ODZ2	5	167642143	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	16410	167642143	13273117	289	135976											
ODZ2	57451	broad.mit.edu	37	chr5	167675390	167675390	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaggtgaggattctgcCaccaaaggtgggcagtggct	16	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167675390	A	A	167675390	1	1	164	0	1	0	0	0	0	0	0	0	10930	609	21	2		2	ODZ2	5	167675390	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	33247	167675390	13239870	290	135977											
DOCK2	1794	broad.mit.edu	37	chr5	169446071	169446071	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccataccaatcttcttcgacAtgatgctgtgtgaatatcaa	6	10	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169446071	C	C	169446071	3	2	164	1	0	0	0	0	1	0	0	0	4727	217	8	5	3470	5	DOCK2	5	169446071	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	1770681	169446071	11469189	291	135978											
STK10	6793	broad.mit.edu	37	chr5	171544702	171544702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaactgaaatgtcaggccCacgccagggagaaatataaa	11	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171544702	A	A	171544702	1	1	164	0	1	0	0	0	0	0	0	0	15404	609	21	2		2	STK10	5	171544702	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2098631	171544702	9370558	292	135979											
HRH2	3274	broad.mit.edu	37	chr5	175110816	175110816	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctggtcaccttctacctcCcgctactgatcatgtgcatc	8	15	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175110816	G	G	175110816	3	3	164	1	0	0	0	0	1	0	0	0	7423	623	22	4	582	4	HRH2	5	175110816	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3566114	175110816	5804444	293	135980											
F12	2161	broad.mit.edu	37	chr5	176830319	176830319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagggtcgcgcggcgccGcttggcaggcacaccggctg	18	14	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176830319	T	T	176830319	3	4	164	1	0	0	0	0	1	0	0	0	5382	1078	38	3	392	3	F12	5	176830319	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1719503	176830319	4084941	294	135981											
CNOT6	57472	broad.mit.edu	37	chr5	179993993	179993993	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatctgcagaccagtcctTtgaaattatttcaagctctc	5	10	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179993993	C	C	179993993	1	2	164	0	1	0	0	0	0	0	0	0	3654	1856	64	5		5	CNOT6	5	179993993	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	3163674	179993993	921267	295	135982											
C6orf201	404220	broad.mit.edu	37	chr6	4125453	4125453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatctcgcgctgcttgcCtgacctcttgctttctagga	8	14	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4125453	A	A	4125453	1	1	164	0	1	0	0	0	0	0	0	0	2374	696	24	2		2	C6orf201	6	4125453	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08		4125453	166989614	296	135983											
F13A1	2162	broad.mit.edu	37	chr6	6145961	6145961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcccagagacccagggcCggcacacttcttcccactgc	10	17	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6145961	A	A	6145961	3	1	164	1	0	0	0	0	1	0	0	0	5383	652	23	1	112	1	F13A1	6	6145961	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2020508	6145961	164969106	297	135984											
GCNT2	2651	broad.mit.edu	37	chr6	10529565	10529565	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcctttaaaggtgcagtgAaacagttactcagctgcttc	9	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10529565	G	G	10529565	3	3	164	1	0	0	0	0	1	0	0	0	6363	247	9	5	423	5	GCNT2	6	10529565	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	4383604	10529565	160585502	298	135985											
SYCP2L	221711	broad.mit.edu	37	chr6	10910380	10910380	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatatcatttgctttgaaGgacagtagacgttttctcaa	7	6	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10910380	T	T	10910380	5	4	164	1	0	0	0	0	0	0	1	0	15552	1014	35	2	861	2	SYCP2L	6	10910380	Splice_Site	SNP	G	TCGA-50-5941-01A-11D-1753-08	380815	10910380	160204687	299	135986											
CCDC90A	63933	broad.mit.edu	37	chr6	13802537	13802537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggcctccaggatcttgaCcaatgcagacacaatgattt	9	10	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13802537	T	T	13802537	3	4	164	1	0	0	0	0	1	0	0	0	2896	507	18	4	530	4	CCDC90A	6	13802537	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2892157	13802537	157312530	300	135987											
JARID2	3720	broad.mit.edu	37	chr6	15468783	15468783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccaccaggttctcctgcGctgcccaacagcatggtgta	9	14	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15468783	T	T	15468783	2	4	164	1	0	0	0	0	0	0	0	1	8015	1074	38	3		3	JARID2	6	15468783	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	1666246	15468783	155646284	301	135988											
KDM1B	221656	broad.mit.edu	37	chr6	18222173	18222173	+	Frame_Shift_Del	DEL	G	-	-													atttcccacaaactgttacaGgggcatatttgagtggcgtt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18222173	-	-	18222173	7	5	164	1	0	1	0	1	0	0	0	0	8193	1000	35	0	1785	0	KDM1B	6	18222173	Frame_Shift_Del	DEL	G	TCGA-50-5941-01A-11D-1753-08	2753390	18222173	152892894	302	135989											
KIAA0319	9856	broad.mit.edu	37	chr6	24582371	24582371	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaacagagcaagactctgtCcccaaaaagaagaaagacgt	9	10	1	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24582371	A	A	24582371	1	1	164	0	1	0	0	0	0	0	0	0	8238	870	30	3		3	KIAA0319	6	24582371	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6360198	24582371	146532696	303	135990											
SCGN	10590	broad.mit.edu	37	chr6	25689566	25689566	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacttatttagaaaacagaCaaggatcagcatggaatcaa	7	6	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25689566	T	T	25689566	1	4	164	0	1	0	0	0	0	0	0	0	14016	493	17	4		4	SCGN	6	25689566	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1107195	25689566	145425501	304	135991											
OR14J1	442191	broad.mit.edu	37	chr6	29274833	29274833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttatgacaggtacgcaGcaatctgtcaaccacttcat	7	11	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29274833	T	T	29274833	3	4	164	1	0	0	0	0	1	0	0	0	11042	971	34	3	369	3	OR14J1	6	29274833	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3585267	29274833	141840234	305	135992											
OR5V1	81696	broad.mit.edu	37	chr6	29323943	29323943	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcccaagatgatgaattcAgttatagctgtttgattctt	7	6	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29323943	G	G	29323943	2	3	164	1	0	0	0	0	0	0	0	1	11278	175	7	5		5	OR5V1	6	29323943	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	49110	29323943	141791124	306	135993											
MOG	4340	broad.mit.edu	37	chr6	29638999	29638999	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggtggaggagagcctGgttgcccagggatttgtcct	18	8	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29638999	T	T	29638999	1	4	164	0	1	0	0	0	0	0	0	0	9787	1363	47	2		2	MOG	6	29638999	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	315056	29638999	141476068	307	135994											
HLA-F	3134	broad.mit.edu	37	chr6	29691171	29691171	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagccaatcagtgtcgccgcAgttcccaggttctaaagtcc	9	13	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29691171	T	T	29691171	1	4	164	0	1	0	0	0	0	0	0	0	7278	203	7	5		5	HLA-F	6	29691171	5'UTR	SNP	A	TCGA-50-5941-01A-11D-1753-08	52172	29691171	141423896	308	135995											
HLA-G	3135	broad.mit.edu	37	chr6	29798401	29798401	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaccccggggggcctgatgTgtgtgggttgttgaggggaa	19	7	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29798401	A	A	29798401	1	1	164	0	1	0	0	0	0	0	0	0	7279	1711	59	5		5	HLA-G	6	29798401	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	107230	29798401	141316666	309	135996											
TRIM10	10107	broad.mit.edu	37	chr6	30121598	30121598	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgagagtcctctcttcTatcccttaccacccggcccc	6	17	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30121598	G	G	30121598	1	3	164	0	1	0	0	0	0	0	0	0	16610	1537	53	5		5	TRIM10	6	30121598	3'UTR	SNP	T	TCGA-50-5941-01A-11D-1753-08	323197	30121598	140993469	310	135997											
TRIM10	10107	broad.mit.edu	37	chr6	30128165	30128165	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgctgtttctcttagtcCagtccagtccaccctgggat	8	14	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30128165	A	A	30128165	1	1	164	0	1	0	0	0	0	0	0	0	16610	609	21	2		2	TRIM10	6	30128165	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6567	30128165	140986902	311	135998											
DHX16	8449	broad.mit.edu	37	chr6	30639186	30639186	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccactgtcaggcaatggcGtgatctcggctcacttcaac	9	15	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30639186	A	A	30639186	1	1	164	0	1	0	0	0	0	0	0	0	4542	1160	40	4		4	DHX16	6	30639186	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	511021	30639186	140475881	312	135999											
DPCR1	135656	broad.mit.edu	37	chr6	30920784	30920784	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacacgccgcacactaaccCagaacacccagtacaatgat	7	15	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30920784	G	G	30920784	3	3	164	1	0	0	0	0	1	0	0	0	4752	595	21	4	4082	4	DPCR1	6	30920784	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	281598	30920784	140194283	313	136000											
HLA-B	3106	broad.mit.edu	37	chr6	31248135	31248135	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcccagacatgggtccctCggcttcctgccttggaagcg	11	15	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31248135	A	A	31248135	1	1	164	0	1	0	0	0	0	0	0	0	7263	899	31	3		3	HLA-B	6	31248135	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	327351	31248135	139866932	314	136001											
NOTCH4	4855	broad.mit.edu	37	chr6	32169207	32169207	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctccatcccagccacactCtgcagtgttgcagcctttct	6	17	2	0	rs139568674		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32169207	G	G	32169207	3	3	164	1	0	0	0	0	1	0	0	0	10646	922	32	4	2221	4	NOTCH4	6	32169207	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	921072	32169207	138945860	315	136002											
NOTCH4	4855	broad.mit.edu	37	chr6	32181503	32181503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtttggcactggggcCctgtgtggcttggagggcag	19	8	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32181503	A	A	32181503	3	1	164	1	0	0	0	0	1	0	0	0	10646	623	22	2	3797	2	NOTCH4	6	32181503	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	12296	32181503	138933564	316	136003											
HLA-DMB	3109	broad.mit.edu	37	chr6	32903146	32903146	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataattggacccaggaagagGagtgtaacctaagagaggaa	13	5	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32903146	A	A	32903146	3	1	164	1	0	0	0	0	1	0	0	0	7266	1174	41	4	51	4	HLA-DMB	6	32903146	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	721643	32903146	138211921	317	136004											
KCNK17	89822	broad.mit.edu	37	chr6	39278873	39278873	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacacacacacacacacacac	0	21	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39278873	T	T	39278873	1	4	164	0	1	0	0	0	0	0	0	0	8134	493	17	4		4	KCNK17	6	39278873	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6375727	39278873	131836194	318	136005											
FOXP4	116113	broad.mit.edu	37	chr6	41552696	41552696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctcctcccaccctgtttAcacctcaccaagggcccaag	7	18	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41552696	G	G	41552696	1	3	164	0	1	0	0	0	0	0	0	0	6089	406	14	5		5	FOXP4	6	41552696	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	2273823	41552696	129562371	319	136006											
CAPN11	11131	broad.mit.edu	37	chr6	44148766	44148766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtgctctcttggccctGtcccctgcccacaagcctgg	9	18	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44148766	T	T	44148766	1	4	164	0	1	0	0	0	0	0	0	0	2650	1392	48	3		3	CAPN11	6	44148766	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2596070	44148766	126966301	320	136007											
TFAP2B	7021	broad.mit.edu	37	chr6	50805561	50805561	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaataaccaaaaggaaGggggaaaaatgtgctaacct	10	7	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50805561	A	A	50805561	1	1	164	0	1	0	0	0	0	0	0	0	15911	1015	35	4		4	TFAP2B	6	50805561	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	6656795	50805561	120309506	321	136008											
PKHD1	5314	broad.mit.edu	37	chr6	51524526	51524526	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcagactttggtgatttgCctgatgggtaagatagaata	12	4	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51524526	T	T	51524526	2	4	164	1	0	0	0	0	0	0	0	1	12066	738	26	4		4	PKHD1	6	51524526	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	718965	51524526	119590541	322	136009											
GSTA1	2938	broad.mit.edu	37	chr6	52658789	52658789	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctattttcataaaatgccttGagagtcagagtgctgcattg	9	7	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52658789	T	T	52658789	1	4	164	0	1	0	0	0	0	0	0	0	6896	1305	45	3		3	GSTA1	6	52658789	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1134263	52658789	118456278	323	136010											
GSTA5	221357	broad.mit.edu	37	chr6	52701131	52701131	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcttcatcccgtcaatctCaaccattggtacttgctgga	7	13	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52701131	G	G	52701131	3	3	164	1	0	0	0	0	1	0	0	0	6900	835	29	4	509	4	GSTA5	6	52701131	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	42342	52701131	118413936	324	136011											
FAM83B	222584	broad.mit.edu	37	chr6	54805963	54805963	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagaaactctccaagtGgcactactaccaaatcagtt	6	12	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54805963	A	A	54805963	3	1	164	1	0	0	0	0	1	0	0	0	5687	1348	47	4	2208	4	FAM83B	6	54805963	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2104832	54805963	116309104	325	136012											
ZNF451	26036	broad.mit.edu	37	chr6	56999642	56999642	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatttgttactcaacaaCaatatagagatcaccttttt	3	7	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56999642	T	T	56999642	4	4	164	1	0	0	0	0	0	1	0	0	18049	479	17	4	702	4	ZNF451	6	56999642	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2193679	56999642	114115425	326	136013											
BAI3	577	broad.mit.edu	37	chr6	70071411	70071411	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagttctttagaggtgagcCacagaagattaaatttttcc	9	6	1	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70071411	T	T	70071411	1	4	164	0	1	0	0	0	0	0	0	0	1305	609	21	4		4	BAI3	6	70071411	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	13071769	70071411	101043656	327	136014											
COL9A1	1297	broad.mit.edu	37	chr6	70964868	70964868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataccgtgtctcctttgggCccagggagaccaggaattcc	11	13	1	1	rs145650924		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70964868	A	A	70964868	2	1	164	1	0	0	0	0	0	0	0	1	3739	726	26	3		3	COL9A1	6	70964868	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	893457	70964868	100150199	328	136015											
CD109	135228	broad.mit.edu	37	chr6	74521964	74521964	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacggcagttaatatttccGcaaatggttttggatttgct	9	7	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74521964	C	C	74521964	3	2	164	1	0	0	0	0	1	0	0	0	2993	1087	38	4	3853	4	CD109	6	74521964	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3557096	74521964	96593103	329	136016											
IMPG1	3617	broad.mit.edu	37	chr6	76735070	76735070	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttatactgagtaaacctAaaagttataggaaaagcata	6	5	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76735070	G	G	76735070	1	3	164	0	1	0	0	0	0	0	0	0	7798	377	13	5		5	IMPG1	6	76735070	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	2213106	76735070	94379997	330	136017											
UBE2CBP	90025	broad.mit.edu	37	chr6	83733789	83733789	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaaattaagactctccCcaatacactaataattttat	2	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83733789	G	G	83733789	1	3	164	0	1	0	0	0	0	0	0	0	16973	638	22	4		4	UBE2CBP	6	83733789	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6998719	83733789	87381278	331	136018											
SEC63	11231	broad.mit.edu	37	chr6	108218735	108218735	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatttcaaaagagttaacaGaatttgcaaaattagatctt	5	4	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108218735	C	C	108218735	1	2	164	0	1	0	0	0	0	0	0	0	14118	957	33	4		4	SEC63	6	108218735	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	24484946	108218735	62896332	332	136019											
GPR6	2830	broad.mit.edu	37	chr6	110300445	110300445	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccccctgctgcggcggctCtaggagccggcggcggagct	17	15	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110300445	A	A	110300445	3	1	164	1	0	0	0	0	1	0	0	0	6766	912	32	3	132	3	GPR6	6	110300445	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2081710	110300445	60814622	333	136020											
WASF1	8936	broad.mit.edu	37	chr6	110424491	110424491	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacaaaaactgtaaggcCcgaaagccaaaaatacttac	7	9	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110424491	T	T	110424491	1	4	164	0	1	0	0	0	0	0	0	0	17379	638	22	4		4	WASF1	6	110424491	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	124046	110424491	60690576	334	136021											
HS3ST5	222537	broad.mit.edu	37	chr6	114378649	114378649	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggaggcagatttaggaaCttctccacgagctgaagttc	11	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114378649	T	T	114378649	2	4	164	1	0	0	0	0	0	0	0	1	7435	564	20	4		4	HS3ST5	6	114378649	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	3954158	114378649	56736418	335	136022											
TAAR1	134864	broad.mit.edu	37	chr6	132966566	132966566	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaagtcataaaggtcaGtaccccagatattttgctaa	7	7	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132966566	C	C	132966566	3	2	164	1	0	0	0	0	1	0	0	0	15608	1020	36	4	446	4	TAAR1	6	132966566	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	18587917	132966566	38148501	336	136023											
UST	10090	broad.mit.edu	37	chr6	149275032	149275032	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgattaaaaatataagtActgccgaacaaccctattta	4	8	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149275032	G	G	149275032	3	3	164	1	0	0	0	0	1	0	0	0	17220	391	14	5	486	5	UST	6	149275032	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	16308466	149275032	21840035	337	136024											
MYCT1	80177	broad.mit.edu	37	chr6	153043513	153043513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagttccaagttgaaacatGgttgtgcaagttggacatta	11	5	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153043513	T	T	153043513	1	4	164	0	1	0	0	0	0	0	0	0	10116	1363	47	2		2	MYCT1	6	153043513	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	3768481	153043513	18071554	338	136025											
TULP4	56995	broad.mit.edu	37	chr6	158882747	158882747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagcacatcttcacactgGacactctcgtgcaggtaagg	12	11	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158882747	T	T	158882747	3	4	164	1	0	0	0	0	1	0	0	0	16902	1174	41	3	1034	3	TULP4	6	158882747	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5839234	158882747	12232320	339	136026											
FNDC1	84624	broad.mit.edu	37	chr6	159653518	159653518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgctgtgggctccctccaCcccaagggcgccttcgccca	11	20	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159653518	A	A	159653518	3	1	164	1	0	0	0	0	1	0	0	0	6026	506	18	3	2016	3	FNDC1	6	159653518	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	770771	159653518	11461549	340	136027											
LPA	4018	broad.mit.edu	37	chr6	161032655	161032655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcatagatgaccaagcttGgcaggttcttccagtgacag	11	9	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161032655	T	T	161032655	3	4	164	1	0	0	0	0	1	0	0	0	8990	1357	47	2	3676	2	LPA	6	161032655	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1379137	161032655	10082412	341	136028											
PLG	5340	broad.mit.edu	37	chr6	161173185	161173185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaaggaagcccagctcCctgtgattgagaataaagtg	10	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161173185	A	A	161173185	3	1	164	1	0	0	0	0	1	0	0	0	12181	623	22	2	2238	2	PLG	6	161173185	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	140530	161173185	9941882	342	136029											
SUN1	23353	broad.mit.edu	37	chr7	892324	892324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagtcaaatctggctgaGttgcctccgatggctaagcg	13	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	892324	T	T	892324	1	4	164	0	1	0	0	0	0	0	0	0	15509	1044	36	3		3	SUN1	7	892324	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08		892324	158246339	343	136030											
GNA12	2768	broad.mit.edu	37	chr7	2875479	2875479	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatcaaatcggtgatgtcttCattagccattctcaagaaga	7	8	4	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2875479	G	G	2875479	1	3	164	0	1	0	0	0	0	0	0	0	6564	841	29	4		4	GNA12	7	2875479	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1983155	2875479	156263184	344	136031											
TNRC18	84629	broad.mit.edu	37	chr7	5354591	5354591	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagatccgcccaccgccctGccctggggaccaggccaacc	12	19	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5354591	A	A	5354591	1	1	164	0	1	0	0	0	0	0	0	0	16462	1334	46	4		4	TNRC18	7	5354591	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2479112	5354591	153784072	345	136032											
DGKB	1607	broad.mit.edu	37	chr7	14378261	14378261	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccaaagattggatcctccAtgcatgcttggtatattcaa	7	11	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14378261	C	C	14378261	3	2	164	1	0	0	0	0	1	0	0	0	4506	214	8	5	441	5	DGKB	7	14378261	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	9023670	14378261	144760402	346	136033											
ABCB5	340273	broad.mit.edu	37	chr7	20668466	20668466	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaaactaacacaagtgaGtatacgattatttttctgta	6	7	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20668466	T	T	20668466	1	4	164	0	1	0	0	0	0	0	0	0	44	1044	36	3		3	ABCB5	7	20668466	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	6290205	20668466	138470197	347	136034											
SKAP2	8935	broad.mit.edu	37	chr7	27022789	27022789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcatagcgcattttatcCgcctttgttatttcatcaaa	5	9	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27022789	A	A	27022789	1	1	164	0	1	0	0	0	0	0	0	0	14469	667	23	1		1	SKAP2	7	27022789	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6354323	27022789	132115874	348	136035											
HOXA2	3199	broad.mit.edu	37	chr7	27140891	27140891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctgcctcttgtgcttcatCctccggttctgaaaccacac	7	15	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27140891	A	A	27140891	3	1	164	1	0	0	0	0	1	0	0	0	7359	854	30	3	549	3	HOXA2	7	27140891	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	118102	27140891	131997772	349	136036											
SCRN1	9805	broad.mit.edu	37	chr7	29976370	29976370	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaagacagacaaatggaaaGagtagatataggccgggcgc	13	6	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29976370	C	C	29976370	1	2	164	0	1	0	0	0	0	0	0	0	14051	957	33	4		4	SCRN1	7	29976370	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2835479	29976370	129162293	350	136037											
EEPD1	80820	broad.mit.edu	37	chr7	36324452	36324452	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acccgctccacgccgtctgtGacgtggaatctgcttctttc	9	15	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36324452	T	T	36324452	1	4	164	0	1	0	0	0	0	0	0	0	4972	1305	45	3		3	EEPD1	7	36324452	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	6348082	36324452	122814211	351	136038											
ELMO1	9844	broad.mit.edu	37	chr7	36917705	36917705	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgtgatttggcgaaagccGacaataccaaaacttgtctg	9	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36917705	T	T	36917705	2	4	164	1	0	0	0	0	0	0	0	1	5107	1057	37	3		3	ELMO1	7	36917705	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	593253	36917705	122220958	352	136039											
TXNDC3	51314	broad.mit.edu	37	chr7	37927822	37927822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaacaacttatagaaattGtgttatattattctgttctg	6	4	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37927822	T	T	37927822	1	4	164	0	1	0	0	0	0	0	0	0	16924	1392	48	3		3	TXNDC3	7	37927822	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1010117	37927822	121210841	353	136040											
HECW1	23072	broad.mit.edu	37	chr7	43519179	43519179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctattctcacaccacaCggtgctttttttcactggtc	7	13	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43519179	A	A	43519179	1	1	164	0	1	0	0	0	0	0	0	0	7109	551	19	3		3	HECW1	7	43519179	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	5591357	43519179	115619484	354	136041											
SPDYE1	285955	broad.mit.edu	37	chr7	44046813	44046813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggaagctgacctcagCcggaggtctctcctggtggt	14	12	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44046813	T	T	44046813	1	4	164	0	1	0	0	0	0	0	0	0	15145	754	26	4		4	SPDYE1	7	44046813	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	527634	44046813	115091850	355	136042											
POLM	27434	broad.mit.edu	37	chr7	44113476	44113476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccaggatgggcagggcCtcgtggatccccccacagca	12	16	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44113476	A	A	44113476	3	1	164	1	0	0	0	0	1	0	0	0	12301	681	24	2	276	2	POLM	7	44113476	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	66663	44113476	115025187	356	136043											
TBRG4	9238	broad.mit.edu	37	chr7	45141142	45141142	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactggctcccagttggctGggcaaggtgaggtgccacaa	15	10	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45141142	A	A	45141142	4	1	164	1	0	0	0	0	0	1	0	0	15771	1357	47	4	268	4	TBRG4	7	45141142	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1027666	45141142	113997521	357	136044											
ADCY1	107	broad.mit.edu	37	chr7	45650023	45650023	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccggaacgttgccatggagAtgaaggaggacttcctgaag	14	9	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45650023	T	T	45650023	3	4	164	1	0	0	0	0	1	0	0	0	292	333	12	5	845	5	ADCY1	7	45650023	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	508881	45650023	113488640	358	136045											
PKD1L1	168507	broad.mit.edu	37	chr7	47906320	47906320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaaatacctcttggacaGggcagggtagaaagagaatg	13	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47906320	T	T	47906320	1	4	164	0	1	0	0	0	0	0	0	0	12059	1015	35	2		2	PKD1L1	7	47906320	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2256297	47906320	111232343	359	136046											
UPP1	7378	broad.mit.edu	37	chr7	48143002	48143002	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgcattggcacttctggtGggataggtaaggtctgcaga	14	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48143002	A	A	48143002	3	1	164	1	0	0	0	0	1	0	0	0	17138	1348	47	4	444	4	UPP1	7	48143002	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	236682	48143002	110995661	360	136047											
POM121L12	285877	broad.mit.edu	37	chr7	53104146	53104146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgctggtccagcccgcccCatccgccatctgggacttct	10	18	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104146	A	A	53104146	3	1	164	1	0	0	0	0	1	0	0	0	12336	594	21	2	784	2	POM121L12	7	53104146	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4961144	53104146	106034517	361	136048											
LANCL2	55915	broad.mit.edu	37	chr7	55467813	55467813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggtactatggggtatgGgtaactatgggcgtctctac	14	6	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55467813	T	T	55467813	1	4	164	0	1	0	0	0	0	0	0	0	8693	1247	43	2		2	LANCL2	7	55467813	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2363667	55467813	103670850	362	136049											
ZNF479	90827	broad.mit.edu	37	chr7	57193643	57193643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcaaagcacagctcccCagaccacattttaaggactg	6	13	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57193643	A	A	57193643	1	1	164	0	1	0	0	0	0	0	0	0	18060	609	21	2		2	ZNF479	7	57193643	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1725830	57193643	101945020	363	136050											
ZNF716	441234	broad.mit.edu	37	chr7	57510075	57510075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagagaggggtgggggctGgttggaactgactgaaagtg	21	3	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57510075	T	T	57510075	1	4	164	0	1	0	0	0	0	0	0	0	18247	1363	47	2		2	ZNF716	7	57510075	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	316432	57510075	101628588	364	136051											
ZNF735	730291	broad.mit.edu	37	chr7	63673615	63673615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgaggttaacctcaataCataattcctaatatattgcc	7	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63673615	A	A	63673615	1	1	164	0	1	0	0	0	0	0	0	0	18253	493	17	3		3	ZNF735	7	63673615	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6163540	63673615	95465048	365	136052											
WBSCR27	155368	broad.mit.edu	37	chr7	73249147	73249147	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatgaagccatccttggcaGagatgccggataccacctcc	10	13	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73249147	A	A	73249147	2	1	164	1	0	0	0	0	0	0	0	1	17393	933	33	4		4	WBSCR27	7	73249147	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	9575532	73249147	85889516	366	136053											
RFC2	5982	broad.mit.edu	37	chr7	73668693	73668693	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccacctcgcccgcgccaccAcagacggcctccacctccat	6	23	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73668693	G	G	73668693	2	3	164	1	0	0	0	0	0	0	0	1	13353	157	6	5		5	RFC2	7	73668693	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	419546	73668693	85469970	367	136054											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73952477	73952477	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttcacaggtcagacaaggGcagcatgtctgaagactgtg	12	10	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73952477	C	C	73952477	3	2	164	1	0	0	0	0	1	0	0	0	6933	1203	42	4	1463	4	GTF2IRD1	7	73952477	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	283784	73952477	85186186	368	136055											
MAGI2	9863	broad.mit.edu	37	chr7	77762312	77762312	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggactctgctgtgccaGgggactctgctgcgccatgg	16	12	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77762312	T	T	77762312	3	4	164	1	0	0	0	0	1	0	0	0	9283	991	35	2	1290	2	MAGI2	7	77762312	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3809835	77762312	81376351	369	136056											
MAGI2	9863	broad.mit.edu	37	chr7	78754592	78754592	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagtaaggaaagccctGccaaaacaagagatggctag	12	7	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78754592	A	A	78754592	1	1	164	0	1	0	0	0	0	0	0	0	9283	1334	46	4		4	MAGI2	7	78754592	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	992280	78754592	80384071	370	136057											
CACNA2D1	781	broad.mit.edu	37	chr7	81624225	81624225	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctgaatgttttttctcCactttccccatcaatcatct	3	12	5	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81624225	G	G	81624225	3	3	164	1	0	0	0	0	1	0	0	0	2574	603	21	4	1662	4	CACNA2D1	7	81624225	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2869633	81624225	77514438	371	136058											
C7orf23	79161	broad.mit.edu	37	chr7	86827212	86827212	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtcctgtgcattgcaActtaaaccctcaagaacact	5	11	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86827212	T	T	86827212	1	4	164	0	1	0	0	0	0	0	0	0	2404	58	2	5		5	C7orf23	7	86827212	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	5202987	86827212	72311451	372	136059											
SAMD9	54809	broad.mit.edu	37	chr7	92731758	92731759	+	Frame_Shift_Ins	INS	-	G	G													agatagctcatttttattatINScaaaaaaaggaatgagctgg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92731759	G	G	92731758	7	5	164	1	0	1	1	0	0	0	0	0	13937	1435	50	0	1120	0	SAMD9	7	92731758	Frame_Shift_Ins	INS	-	TCGA-50-5941-01A-11D-1753-08	5904546	92731758	66406905	373	136060											
SAMD9L	219285	broad.mit.edu	37	chr7	92762155	92762155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatctccatacaccttgcGctgtcttgtaagcagaagag	8	11	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92762155	T	T	92762155	3	4	164	1	0	0	0	0	1	0	0	0	13938	1087	38	3	1628	3	SAMD9L	7	92762155	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	30397	92762155	66376508	374	136061											
ZAN	7455	broad.mit.edu	37	chr7	100345752	100345752	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctgctccatctccctttCtctccagtttgccgtggtag	7	16	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100345752	T	T	100345752	1	4	164	0	1	0	0	0	0	0	0	0	17640	928	32	4		4	ZAN	7	100345752	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	7583597	100345752	58792911	375	136062											
SERPINE1	5054	broad.mit.edu	37	chr7	100777155	100777155	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaacatgaccaggctgcccCgcctcctggttctgcccaag	10	17	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100777155	T	T	100777155	3	4	164	1	0	0	0	0	1	0	0	0	14224	652	23	4	894	4	SERPINE1	7	100777155	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	431403	100777155	58361508	376	136063											
CUX1	1523	broad.mit.edu	37	chr7	101845330	101845330	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcctccccgatcgtgcCcatgtccaagcccaccaagc	7	20	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101845330	T	T	101845330	3	4	164	1	0	0	0	0	1	0	0	0	4097	623	22	4	2890	4	CUX1	7	101845330	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1068175	101845330	57293333	377	136064											
RELN	5649	broad.mit.edu	37	chr7	103163929	103163929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctattgcccatgtctgctGcttgtcaaaaggagctggtt	10	9	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103163929	T	T	103163929	3	4	164	1	0	0	0	0	1	0	0	0	13328	1328	46	3	3059	3	RELN	7	103163929	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1318599	103163929	55974734	378	136065											
RELN	5649	broad.mit.edu	37	chr7	103322530	103322530	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagaataaatgtaagtgctAcatacacagcatgggagata	10	5	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103322530	G	G	103322530	1	3	164	0	1	0	0	0	0	0	0	0	13328	406	14	5		5	RELN	7	103322530	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	158601	103322530	55816133	379	136066											
WNT16	51384	broad.mit.edu	37	chr7	120965378	120965378	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgctgacaggagcccCggttacccaacccaacccag	8	18	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120965378	G	G	120965378	1	3	164	0	1	0	0	0	0	0	0	0	17512	667	23	4		4	WNT16	7	120965378	5'Flank	SNP	C	TCGA-50-5941-01A-11D-1753-08	17642848	120965378	38173285	380	136067											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651013	121651013	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaagattcaacttcatcagGttcagaagaatcactaaagg	8	8	5	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121651013	A	A	121651013	3	1	164	1	0	0	0	0	1	0	0	0	12922	1261	44	4	1959	4	PTPRZ1	7	121651013	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	685635	121651013	37487650	381	136068											
SLC13A1	6561	broad.mit.edu	37	chr7	122757399	122757399	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtcatgcacactgcattCataaacagaattcaggccct	6	11	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122757399	A	A	122757399	1	1	164	0	1	0	0	0	0	0	0	0	14504	841	29	3		3	SLC13A1	7	122757399	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1106386	122757399	36381264	382	136069											
SPAM1	6677	broad.mit.edu	37	chr7	123594501	123594501	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagagtttccaaaatacctGatgcaaaaagtccacttccg	6	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123594501	C	C	123594501	3	2	164	1	0	0	0	0	1	0	0	0	15102	1290	45	4	879	4	SPAM1	7	123594501	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	837102	123594501	35544162	383	136070											
MKLN1	4289	broad.mit.edu	37	chr7	131163290	131163290	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaatacgtagttgctgaTaaatggtcaaagttatagaa	9	4	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131163290	G	G	131163290	1	3	164	0	1	0	0	0	0	0	0	0	9696	1421	49	5		5	MKLN1	7	131163290	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	7568789	131163290	27975373	384	136071											
PLXNA4	91584	broad.mit.edu	37	chr7	131879026	131879026	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctacccaggtccctttctCcacagtaggatctcagggat	8	14	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131879026	A	A	131879026	1	1	164	0	1	0	0	0	0	0	0	0	12217	870	30	3		3	PLXNA4	7	131879026	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	715736	131879026	27259637	385	136072											
PLXNA4	91584	broad.mit.edu	37	chr7	131883442	131883442	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaacaccaagatactgccActcacttgctgatgaggcaa	7	12	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131883442	G	G	131883442	1	3	164	0	1	0	0	0	0	0	0	0	12217	174	6	5		5	PLXNA4	7	131883442	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	4416	131883442	27255221	386	136073											
EXOC4	60412	broad.mit.edu	37	chr7	133622639	133622639	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgtttctgatttgcttTtcagggcagcttttggcaag	12	6	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133622639	C	C	133622639	1	2	164	0	1	0	0	0	0	0	0	0	5348	1856	64	5		5	EXOC4	7	133622639	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	1739197	133622639	25516024	387	136074											
NUP205	23165	broad.mit.edu	37	chr7	135282250	135282250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcattcttacccttttacGtttccataattatcaaattt	1	9	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135282250	T	T	135282250	1	4	164	0	1	0	0	0	0	0	0	0	10854	1160	40	3		3	NUP205	7	135282250	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1659611	135282250	23856413	388	136075											
DGKI	9162	broad.mit.edu	37	chr7	137148322	137148322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccactgtcactcagcatgCgtttccgcagggcaggattc	11	14	2	0	rs78898727		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137148322	A	A	137148322	3	1	164	1	0	0	0	0	1	0	0	0	4511	768	27	3	553	3	DGKI	7	137148322	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1866072	137148322	21990341	389	136076											
SLC37A3	84255	broad.mit.edu	37	chr7	140055463	140055463	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagagctagaaaacaataCctacctcataaccatactga	4	12	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140055463	T	T	140055463	1	4	164	0	1	0	0	0	0	0	0	0	14713	522	18	4		4	SLC37A3	7	140055463	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2907141	140055463	19083200	390	136077											
BRAF	673	broad.mit.edu	37	chr7	140494268	140494268	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactggtgagaatttggggcCtggaaaaatgaagtcattgg	15	4	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140494268	A	A	140494268	5	1	164	1	0	0	0	0	0	0	1	0	1505	695	24	2	1364	2	BRAF	7	140494268	Splice_Site	SNP	C	TCGA-50-5941-01A-11D-1753-08	438805	140494268	18644395	391	136078											
EPHB6	2051	broad.mit.edu	37	chr7	142568118	142568118	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatttgacaagatgatccGcaagccagataccctgcagg	10	11	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142568118	A	A	142568118	3	1	164	1	0	0	0	0	1	0	0	0	5220	1087	38	4	2813	4	EPHB6	7	142568118	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2073850	142568118	16570545	392	136079											
KEL	3792	broad.mit.edu	37	chr7	142638294	142638294	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatggatgtgaccagggaGgtgttggtcgatatttctgt	14	6	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142638294	T	T	142638294	1	4	164	0	1	0	0	0	0	0	0	0	8212	1015	35	2		2	KEL	7	142638294	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	70176	142638294	16500369	393	136080											
KEL	3792	broad.mit.edu	37	chr7	142651453	142651453	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggtaagtcaggtattcccGaaagatctggaggaaggaaa	13	6	2	1	rs61728832		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142651453	A	A	142651453	3	1	164	1	0	0	0	0	1	0	0	0	8212	1057	37	4	1504	4	KEL	7	142651453	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	13159	142651453	16487210	394	136081											
KEL	3792	broad.mit.edu	37	chr7	142659256	142659256	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acacagccaccctcacccctCcccgctaagcctctgactcc	4	23	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142659256	G	G	142659256	1	3	164	0	1	0	0	0	0	0	0	0	8212	870	30	4		4	KEL	7	142659256	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	7803	142659256	16479407	395	136082											
CLCN1	1180	broad.mit.edu	37	chr7	143039237	143039237	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggctggaaccagctcaggTcaggggcactagacggaatt	14	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143039237	C	C	143039237	5	2	164	1	0	0	0	0	0	0	1	0	3493	1681	58	5	1856	5	CLCN1	7	143039237	Splice_Site	SNP	T	TCGA-50-5941-01A-11D-1753-08	379981	143039237	16099426	396	136083											
OR2A7	401427	broad.mit.edu	37	chr7	143955988	143955988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaaagagtccaatcacaCagaggtgggagaagcaggtg	13	7	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143955988	A	A	143955988	3	1	164	1	0	0	0	0	1	0	0	0	11076	478	17	3	201	3	OR2A7	7	143955988	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	916751	143955988	15182675	397	136084											
NOBOX	135935	broad.mit.edu	37	chr7	144097292	144097292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaccagtgagccggcccCctttaccatgatgcgctggg	12	15	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144097292	A	A	144097292	3	1	164	1	0	0	0	0	1	0	0	0	10607	638	22	2		2	NOBOX	7	144097292	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	141304	144097292	15041371	398	136085											
NOS3	4846	broad.mit.edu	37	chr7	150704248	150704248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctgcgcctttgctcgtGccgtggacacacggctggag	13	13	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150704248	T	T	150704248	3	4	164	1	0	0	0	0	1	0	0	0	10639	1319	46	3	2340	3	NOS3	7	150704248	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	6606956	150704248	8434415	399	136086											
NUB1	51667	broad.mit.edu	37	chr7	151064199	151064199	+	Frame_Shift_Del	DEL	G	-	-													ggagaaaatcatcagagactGgtccacataaaagtatgttc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151064199	-	-	151064199	7	5	164	1	0	1	0	1	0	0	0	0	10809	1335	47	0	1005	0	NUB1	7	151064199	Frame_Shift_Del	DEL	G	TCGA-50-5941-01A-11D-1753-08	359951	151064199	8074464	400	136087											
PTPRN2	5799	broad.mit.edu	37	chr7	158325361	158325361	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatgatgtgattagaggaaCagcatggaacatggcaaaaa	11	5	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158325361	G	G	158325361	1	3	164	0	1	0	0	0	0	0	0	0	12916	493	17	4		4	PTPRN2	7	158325361	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	7261162	158325361	813302	401	136088											
CSMD1	64478	broad.mit.edu	37	chr8	2944825	2944825	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtgggcagacagacaCacacagaaataagtcaacaa	10	9	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2944825	T	T	2944825	1	4	164	0	1	0	0	0	0	0	0	0	3978	493	17	4		4	CSMD1	8	2944825	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08		2944825	143419197	402	136089											
PRSS55	203074	broad.mit.edu	37	chr8	10383137	10383137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcctgtccctggtcacGggaactcagctcggtccacg	11	16	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10383137	T	T	10383137	2	4	164	1	0	0	0	0	0	0	0	1	12740	1103	39	1		1	PRSS55	8	10383137	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	7438312	10383137	135980885	403	136090											
RP1L1	94137	broad.mit.edu	37	chr8	10465503	10465503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtctccccttcaacctcCtgggcctcttcaccttctga	7	17	5	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10465503	A	A	10465503	3	1	164	1	0	0	0	0	1	0	0	0	13644	680	24	2	1101	2	RP1L1	8	10465503	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	82366	10465503	135898519	404	136091											
AMAC1L2	83650	broad.mit.edu	37	chr8	11189238	11189238	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgctgtccctggggcttcTggtctatcgttctctgcact	12	13	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11189238	A	A	11189238	3	1	164	1	0	0	0	0	1	0	0	0	560	1580	55	5	625	5	AMAC1L2	8	11189238	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	723735	11189238	135174784	405	136092											
PCM1	5108	broad.mit.edu	37	chr8	17823761	17823761	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtatatttttcgtctAtttttataacttctgaagca	5	5	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17823761	G	G	17823761	1	3	164	0	1	0	0	0	0	0	0	0	11678	464	16	5		5	PCM1	8	17823761	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	6634523	17823761	128540261	406	136093											
ATP6V1B2	526	broad.mit.edu	37	chr8	20073974	20073974	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctacattacagaggggcagAtctatgtggacagacagctg	13	8	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20073974	G	G	20073974	3	3	164	1	0	0	0	0	1	0	0	0	1183	333	12	5	1171	5	ATP6V1B2	8	20073974	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	2250213	20073974	126290048	407	136094											
ADAM7	8756	broad.mit.edu	37	chr8	24326279	24326279	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattttccctaactttacaGggcatccatgatgaaaagta	7	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24326279	T	T	24326279	5	4	164	1	0	0	0	0	0	0	1	0	251	1014	35	2	605	2	ADAM7	8	24326279	Splice_Site	SNP	G	TCGA-50-5941-01A-11D-1753-08	4252305	24326279	122037743	408	136095											
ADAM7	8756	broad.mit.edu	37	chr8	24334069	24334069	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataatacgaatgcaaagaaCctttcagcgcagttctctgc	7	10	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24334069	T	T	24334069	1	4	164	0	1	0	0	0	0	0	0	0	251	522	18	4		4	ADAM7	8	24334069	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	7790	24334069	122029953	409	136096											
NRG1	3084	broad.mit.edu	37	chr8	32463033	32463033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatgtatttatatttgttGgatttctgtgatatatactg	8	2	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32463033	T	T	32463033	1	4	164	0	1	0	0	0	0	0	0	0	10742	1363	47	2		2	NRG1	8	32463033	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	8128964	32463033	113900989	410	136097											
NRG1	3084	broad.mit.edu	37	chr8	32471999	32471999	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcccggcctcctgtttatAtatcataatgtcctatcacc	5	14	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32471999	G	G	32471999	1	3	164	0	1	0	0	0	0	0	0	0	10742	464	16	5		5	NRG1	8	32471999	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	8966	32471999	113892023	411	136098											
ADAM18	8749	broad.mit.edu	37	chr8	39537481	39537481	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caattaacagtatgttaccaTtatgcagtactcacttggaa	6	8	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39537481	C	C	39537481	1	2	164	0	1	0	0	0	0	0	0	0	239	1508	52	5		5	ADAM18	8	39537481	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	7065482	39537481	106826541	412	136099											
IDO1	3620	broad.mit.edu	37	chr8	39776555	39776555	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcagcgcagctttcctctCagctgggtatggttcctctc	12	13	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39776555	T	T	39776555	1	4	164	0	1	0	0	0	0	0	0	0	7571	841	29	4		4	IDO1	8	39776555	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	239074	39776555	106587467	413	136100											
MYST3	7994	broad.mit.edu	37	chr8	41792282	41792282	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcggctcttgcctttgggCcatccctttttctttttcaa	7	12	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41792282	T	T	41792282	4	4	164	1	0	0	0	0	0	1	0	0	10198	740	26	4	2562	4	MYST3	8	41792282	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2015727	41792282	104571740	414	136101											
PLAT	5327	broad.mit.edu	37	chr8	42046462	42046462	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtacatacttttgacaggCactgagtggcactgtgccct	10	11	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42046462	A	A	42046462	2	1	164	1	0	0	0	0	0	0	0	1	12116	697	25	3		3	PLAT	8	42046462	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	254180	42046462	104317560	415	136102											
SNTG1	54212	broad.mit.edu	37	chr8	51362327	51362327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccagccatttctttaagGcattgtttttgaagtgtgag	10	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51362327	T	T	51362327	1	4	164	0	1	0	0	0	0	0	0	0	14988	1218	42	3		3	SNTG1	8	51362327	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	9315865	51362327	95001695	416	136103											
SNTG1	54212	broad.mit.edu	37	chr8	51449156	51449156	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttaggggaaaaataatatCccccagataaaaggggtttg	10	5	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51449156	A	A	51449156	1	1	164	0	1	0	0	0	0	0	0	0	14988	870	30	3		3	SNTG1	8	51449156	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	86829	51449156	94914866	417	136104											
RP1	6101	broad.mit.edu	37	chr8	55609264	55609264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatggtgtgattttactgGtgcagagaaccacttcaaga	11	6	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55609264	T	T	55609264	1	4	164	0	1	0	0	0	0	0	0	0	13643	1276	44	3		3	RP1	8	55609264	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4160108	55609264	90754758	418	136105											
UBXN2B	137886	broad.mit.edu	37	chr8	59337166	59337166	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatctgaaactcttctgcTgttgcatcaggcccacgttt	7	13	5	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59337166	A	A	59337166	1	1	164	0	1	0	0	0	0	0	0	0	17041	1595	55	5		5	UBXN2B	8	59337166	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	3727902	59337166	87026856	419	136106											
PREX2	80243	broad.mit.edu	37	chr8	68942818	68942818	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaaagctgtctgttccaaCataaacgaggccaagagaca	9	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68942818	T	T	68942818	2	4	164	1	0	0	0	0	0	0	0	1	12583	477	17	4		4	PREX2	8	68942818	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	9605652	68942818	77421204	420	136107											
TRPA1	8989	broad.mit.edu	37	chr8	72935108	72935108	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccagcaagtcatgcaccCcccattagaagcctcactga	7	15	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72935108	T	T	72935108	1	4	164	0	1	0	0	0	0	0	0	0	16702	638	22	4		4	TRPA1	8	72935108	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	3992290	72935108	73428914	421	136108											
ZFHX4	79776	broad.mit.edu	37	chr8	77618756	77618756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagcataatctgcacttGggcctcgccccggcggaagc	11	15	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77618756	T	T	77618756	3	4	164	1	0	0	0	0	1	0	0	0	17761	1339	47	2	2435	2	ZFHX4	8	77618756	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4683648	77618756	68745266	422	136109											
SNX16	64089	broad.mit.edu	37	chr8	82720128	82720128	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcaatggggaaccctcaCgaactgtgcggtaatgagaa	13	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82720128	T	T	82720128	1	4	164	0	1	0	0	0	0	0	0	0	15001	551	19	4		4	SNX16	8	82720128	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	5101372	82720128	63643894	423	136110											
SLC7A13	157724	broad.mit.edu	37	chr8	87242447	87242447	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgatattaataagcaaaaaActtgtgccccaccaatatcc	4	10	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87242447	T	T	87242447	3	4	164	1	0	0	0	0	1	0	0	0	14809	40	2	5	1368	5	SLC7A13	8	87242447	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	4522319	87242447	59121575	424	136111											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885723	88885723	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctatgaacagcgacgctggGagcagcacggcacagcttgg	14	12	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885723	T	T	88885723	2	4	164	1	0	0	0	0	0	0	0	1	4305	1161	41	3		3	DCAF4L2	8	88885723	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	1643276	88885723	57478299	425	136112											
MMP16	4325	broad.mit.edu	37	chr8	89086833	89086833	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatatggaaaacatccttacCtttaaagaacacaaaattcc	4	9	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89086833	G	G	89086833	3	3	164	1	0	0	0	0	1	0	0	0	9748	695	24	4	773	4	MMP16	8	89086833	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	201110	89086833	57277189	426	136113											
SLC26A7	115111	broad.mit.edu	37	chr8	92307866	92307866	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacaagcgtgctgggcttaTccgactttgaaatgcaaagg	11	9	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92307866	C	C	92307866	3	2	164	1	0	0	0	0	1	0	0	0	14636	1435	50	5	422	5	SLC26A7	8	92307866	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	3221033	92307866	54056156	427	136114											
RAD54B	25788	broad.mit.edu	37	chr8	95403926	95403926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggactattttccaacaaccCttgaaggcagaacctgacaa	8	11	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95403926	A	A	95403926	3	1	164	1	0	0	0	0	1	0	0	0	13100	681	24	2	1036	2	RAD54B	8	95403926	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3096060	95403926	50960096	428	136115											
INTS8	55656	broad.mit.edu	37	chr8	95877917	95877917	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctacgttaggtatcatgtatCggtatgtattggtacgtttc	10	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95877917	T	T	95877917	3	4	164	1	0	0	0	0	1	0	0	0	7854	898	31	4	2326	4	INTS8	8	95877917	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	473991	95877917	50486105	429	136116											
RGS22	26166	broad.mit.edu	37	chr8	101084367	101084367	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatatattgatgggactaTagtacctgtattcaaagtaa	7	5	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101084367	C	C	101084367	1	2	164	0	1	0	0	0	0	0	0	0	13414	1421	49	5		5	RGS22	8	101084367	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	5206450	101084367	45279655	430	136117											
SLC25A32	81034	broad.mit.edu	37	chr8	104415420	104415420	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccacgcacaccttcatacTtatatattttcacaagtgta	3	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104415420	G	G	104415420	3	3	164	1	0	0	0	0	1	0	0	0	14610	1609	56	5	439	5	SLC25A32	8	104415420	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	3331053	104415420	41948602	431	136118											
PKHD1L1	93035	broad.mit.edu	37	chr8	110445422	110445424	+	In_Frame_Del	DEL	GTT	-	-													agtctcagttggaccagtagGttgttctcttctttctgtgg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110445424	-	-	110445422	7	5	164	1	0	1	0	1	0	0	0	0	12067	1261	44	0	3427	0	PKHD1L1	8	110445422	In_Frame_Del	DEL	GTT	TCGA-50-5941-01A-11D-1753-08	6030002	110445422	35918600	432	136119											
CSMD3	114788	broad.mit.edu	37	chr8	113326767	113326767	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccatgcacacatttgaagAtttgggtaactgtcaggata	9	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113326767	T	T	113326767	3	4	164	1	0	0	0	0	1	0	0	0	3980	330	12	5	3779	5	CSMD3	8	113326767	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	2881345	113326767	33037255	433	136120											
CSMD3	114788	broad.mit.edu	37	chr8	113349999	113349999	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagacattttttctttccaaAtttcagaggccacagatagg	7	8	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113349999	T	T	113349999	1	4	164	0	1	0	0	0	0	0	0	0	3980	116	4	5		5	CSMD3	8	113349999	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	23232	113349999	33014023	434	136121											
CSMD3	114788	broad.mit.edu	37	chr8	113358306	113358306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatattgaaagctctttcaCgtgtttttaatacacatacc	4	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113358306	A	A	113358306	1	1	164	0	1	0	0	0	0	0	0	0	3980	551	19	3		3	CSMD3	8	113358306	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	8307	113358306	33005716	435	136122											
CSMD3	114788	broad.mit.edu	37	chr8	113668537	113668537	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatttggcccatcatgaacTtccagaacatcataattcag	6	10	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113668537	C	C	113668537	2	2	164	1	0	0	0	0	0	0	0	1	3980	1606	56	5		5	CSMD3	8	113668537	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	310231	113668537	32695485	436	136123											
CSMD3	114788	broad.mit.edu	37	chr8	114031236	114031236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttctatcacaaaacataGttgtgtacaccaaaattatt	3	7	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114031236	T	T	114031236	1	4	164	0	1	0	0	0	0	0	0	0	3980	1044	36	3		3	CSMD3	8	114031236	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	362699	114031236	32332786	437	136124											
TRPS1	7227	broad.mit.edu	37	chr8	116426404	116426404	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatggcaactcatatgcaaAgcatacatcacttcatccag	5	13	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116426404	G	G	116426404	2	3	164	1	0	0	0	0	0	0	0	1	16718	59	3	5		5	TRPS1	8	116426404	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	2395168	116426404	29937618	438	136125											
ADCY8	114	broad.mit.edu	37	chr8	131916433	131916433	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaatacttgtcttcctaaaAagtagaaagaataaaagaaa	5	5	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131916433	T	T	131916433	1	4	164	0	1	0	0	0	0	0	0	0	300	29	1	5		5	ADCY8	8	131916433	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	15490029	131916433	14447589	439	136126											
FAM135B	51059	broad.mit.edu	37	chr8	139158306	139158306	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgttccctaaaaatgacaGataacccccatcccagtccc	4	16	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139158306	T	T	139158306	1	4	164	0	1	0	0	0	0	0	0	0	5495	957	33	3		3	FAM135B	8	139158306	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	7241873	139158306	7205716	440	136127											
BAI1	575	broad.mit.edu	37	chr8	143562550	143562550	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaggtctgctgccaggGgccaagggtgggattcctgg	17	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143562550	C	C	143562550	1	2	164	0	1	0	0	0	0	0	0	0	1303	1247	43	4		4	BAI1	8	143562550	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4404244	143562550	2801472	441	136128											
DGAT1	8694	broad.mit.edu	37	chr8	145540826	145540827	+	Intron	DEL	CA	-	-													ttcacagccatgttccacatCacacacacacacaccccacc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145540827	-	-	145540826	6	5	164	0	1	1	0	1	0	0	0	0	4497	841	29	0		0	DGAT1	8	145540826	Intron	DEL	CA	TCGA-50-5941-01A-11D-1753-08	1978276	145540826	823196	442	136129											
CD274	29126	broad.mit.edu	37	chr9	5466808	5466808	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgtggcatccaagatAcaaactcaaagaagcaaagt	7	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5466808	T	T	5466808	3	4	164	1	0	0	0	0	1	0	0	0	3021	391	14	5	847	5	CD274	9	5466808	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08		5466808	135746623	443	136130											
KIAA2026	158358	broad.mit.edu	37	chr9	5920563	5920563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggacttgttgaaagggaCgacaattcagtttgaggttt	12	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5920563	A	A	5920563	2	1	164	1	0	0	0	0	0	0	0	1	8340	523	19	3		3	KIAA2026	9	5920563	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	453755	5920563	135292868	444	136131											
PTPRD	5789	broad.mit.edu	37	chr9	8340448	8340448	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgccaagggcccctgggtAgcgatgtaggctttctgttg	14	10	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8340448	T	T	8340448	2	4	164	1	0	0	0	0	0	0	0	1	12907	407	15	5		5	PTPRD	9	8340448	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	2419885	8340448	132872983	445	136132											
PTPRD	5789	broad.mit.edu	37	chr9	8449900	8449900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgaaacagatagaaaagcAgagaattgcacctgcactcc	8	9	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8449900	T	T	8449900	1	4	164	0	1	0	0	0	0	0	0	0	12907	203	7	5		5	PTPRD	9	8449900	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	109452	8449900	132763531	446	136133											
PTPRD	5789	broad.mit.edu	37	chr9	8504469	8504469	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatactttttaatcataCtgtctggaccatcagatttc	5	9	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8504469	T	T	8504469	1	4	164	0	1	0	0	0	0	0	0	0	12907	580	20	4		4	PTPRD	9	8504469	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	54569	8504469	132708962	447	136134											
MPDZ	8777	broad.mit.edu	37	chr9	13119528	13119528	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcggcaaccgcttcttgGgtggcattacgaacgtcttc	11	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13119528	A	A	13119528	2	1	164	1	0	0	0	0	0	0	0	1	9816	1219	43	4		4	MPDZ	9	13119528	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4615059	13119528	128093903	448	136135											
MPDZ	8777	broad.mit.edu	37	chr9	13125264	13125264	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgtgggaccatcagagaCtgggagctgttctttttttc	12	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13125264	T	T	13125264	2	4	164	1	0	0	0	0	0	0	0	1	9816	564	20	4		4	MPDZ	9	13125264	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	5736	13125264	128088167	449	136136											
SH3GL2	6456	broad.mit.edu	37	chr9	17795682	17795682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgaggggatgctgcatGgccattcaggcttcttcccc	13	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17795682	T	T	17795682	3	4	164	1	0	0	0	0	1	0	0	0	14364	1348	47	2	1034	2	SH3GL2	9	17795682	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4670418	17795682	123417749	450	136137											
CDKN2A	1029	broad.mit.edu	37	chr9	21974560	21974560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accccttctgaaaactccccAggaagcctcccctttttccg	5	18	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21974560	T	T	21974560	1	4	164	0	1	0	0	0	0	0	0	0	3191	175	7	5		5	CDKN2A	9	21974560	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	4178878	21974560	119238871	451	136138											
TEK	7010	broad.mit.edu	37	chr9	27190515	27190515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggactaatctgccttctgaAattgtatttagttcttccaa	6	8	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27190515	T	T	27190515	1	4	164	0	1	0	0	0	0	0	0	0	15873	29	1	5		5	TEK	9	27190515	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	5215955	27190515	114022916	452	136139											
GDA	9615	broad.mit.edu	37	chr9	74865729	74865729	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatttccttaatgttccatGgtattttcaacggaatacac	5	10	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74865729	A	A	74865729	1	1	164	0	1	0	0	0	0	0	0	0	6369	1363	47	4		4	GDA	9	74865729	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	47675214	74865729	66347702	453	136140											
ANXA1	301	broad.mit.edu	37	chr9	75778406	75778406	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcagggtgaccgatctgaGgactttggtgtgaatgaaga	14	5	2	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75778406	A	A	75778406	2	1	164	1	0	0	0	0	0	0	0	1	714	991	35	4		4	ANXA1	9	75778406	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	912677	75778406	65435025	454	136141											
PCSK5	5125	broad.mit.edu	37	chr9	78789943	78789943	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctctacggcacctccGtgcagccatattcaccaacc	7	17	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78789943	T	T	78789943	3	4	164	1	0	0	0	0	1	0	0	0	11697	1145	40	3	1852	3	PCSK5	9	78789943	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3011537	78789943	62423488	455	136142											
FLJ46321	389763	broad.mit.edu	37	chr9	84604696	84604696	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtcttttgttctcagcatCagggcagagccaagaggaga	12	9	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84604696	G	G	84604696	3	3	164	1	0	0	0	0	1	0	0	0	5990	827	29	4	196	4	FLJ46321	9	84604696	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5814753	84604696	56608735	456	136143											
FRMD3	257019	broad.mit.edu	37	chr9	85862723	85862723	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtttgaataatcaattatGagtaaggaacacctgttgac	9	5	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85862723	T	T	85862723	1	4	164	0	1	0	0	0	0	0	0	0	6110	1305	45	3		3	FRMD3	9	85862723	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	1258027	85862723	55350708	457	136144											
DAPK1	1612	broad.mit.edu	37	chr9	90312088	90312088	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttctggctcagtttcctGaagtcccttgtcccagttga	8	11	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90312088	T	T	90312088	2	4	164	1	0	0	0	0	0	0	0	1	4268	1277	45	3		3	DAPK1	9	90312088	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4449365	90312088	50901343	458	136145											
ROR2	4920	broad.mit.edu	37	chr9	94486199	94486199	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccactgtggtgtgagctGggcttggggaccatctgagg	17	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94486199	A	A	94486199	2	1	164	1	0	0	0	0	0	0	0	1	13638	1335	47	4		4	ROR2	9	94486199	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4174111	94486199	46727232	459	136146											
IARS	3376	broad.mit.edu	37	chr9	95036847	95036847	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagggatgaaacattactgTgttacaacgttaactttgta	8	6	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95036847	A	A	95036847	1	1	164	0	1	0	0	0	0	0	0	0	7543	1711	59	5		5	IARS	9	95036847	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	550648	95036847	46176584	460	136147											
PTPDC1	138639	broad.mit.edu	37	chr9	96827133	96827133	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttaatacactttttgtctCtctgtgcaagctggcattta	6	9	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96827133	T	T	96827133	1	4	164	0	1	0	0	0	0	0	0	0	12879	928	32	4		4	PTPDC1	9	96827133	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1790286	96827133	44386298	461	136148											
FBP2	8789	broad.mit.edu	37	chr9	97349768	97349768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacctgagaagacaaaaggCtgaatgaggaagtcactagg	12	6	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97349768	A	A	97349768	1	1	164	0	1	0	0	0	0	0	0	0	5763	812	28	3		3	FBP2	9	97349768	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	522635	97349768	43863663	462	136149											
C9orf102	375748	broad.mit.edu	37	chr9	98690246	98690246	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaattagaaaaaatgaAtgaggttagtattgtatgaa	10	0	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98690246	G	G	98690246	1	3	164	0	1	0	0	0	0	0	0	0	2471	116	4	5		5	C9orf102	9	98690246	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	1340478	98690246	42523185	463	136150											
TBC1D2	55357	broad.mit.edu	37	chr9	100961605	100961605	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccactggtccgtgcctgacCtccagtgggtctgccagcca	12	16	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100961605	T	T	100961605	1	4	164	0	1	0	0	0	0	0	0	0	15727	696	24	4		4	TBC1D2	9	100961605	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	2271359	100961605	40251826	464	136151											
COL15A1	1306	broad.mit.edu	37	chr9	101747956	101747956	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccggcctacagtttcggGcctggtgccaatgttggccg	13	13	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101747956	A	A	101747956	2	1	164	1	0	0	0	0	0	0	0	1	3704	1190	42	4		4	COL15A1	9	101747956	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	786351	101747956	39465475	465	136152											
OR13F1	138805	broad.mit.edu	37	chr9	107267232	107267232	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtatcctgagaatcagctCagtggaaggtcgaagtaaag	12	7	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107267232	A	A	107267232	4	1	164	1	0	0	0	0	0	1	0	0	11035	838	29	3	691	3	OR13F1	9	107267232	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5519276	107267232	33946199	466	136153											
ACTL7B	10880	broad.mit.edu	37	chr9	111617373	111617373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgtccgggagctcgtagtCcacgcgcagctcctccggga	14	16	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111617373	A	A	111617373	3	1	164	1	0	0	0	0	1	0	0	0	201	855	30	3	413	3	ACTL7B	9	111617373	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4350141	111617373	29596058	467	136154											
SUSD1	64420	broad.mit.edu	37	chr9	114904686	114904686	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacactgaagaatccttctCtgcaagcataacgaacctgg	8	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114904686	G	G	114904686	3	3	164	1	0	0	0	0	1	0	0	0	15525	913	32	4	1675	4	SUSD1	9	114904686	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3287313	114904686	26308745	468	136155											
OR1L8	138881	broad.mit.edu	37	chr9	125329898	125329898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcaggctgtagataaaagGattgagcatggatgacaaaa	11	5	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125329898	T	T	125329898	3	4	164	1	0	0	0	0	1	0	0	0	11061	1174	41	3	74	3	OR1L8	9	125329898	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	10425212	125329898	15883533	469	136156											
OR1Q1	158131	broad.mit.edu	37	chr9	125376974	125376974	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcacaacagtgactatatgTccaagtctatagaactaatt	7	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125376974	G	G	125376974	1	3	164	0	1	0	0	0	0	0	0	0	11065	1682	58	5		5	OR1Q1	9	125376974	5'Flank	SNP	T	TCGA-50-5941-01A-11D-1753-08	47076	125376974	15836457	470	136157											
SPTAN1	6709	broad.mit.edu	37	chr9	131339595	131339595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaaataagttaccaagGgtcaggagaatagttctgac	10	6	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131339595	T	T	131339595	1	4	164	0	1	0	0	0	0	0	0	0	15235	1247	43	2		2	SPTAN1	9	131339595	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5962621	131339595	9873836	471	136158											
PPP2R4	5524	broad.mit.edu	37	chr9	131885446	131885446	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaggagctgctgcagcaGcctttccaaaaatagctcca	10	11	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131885446	A	A	131885446	1	1	164	0	1	0	0	0	0	0	0	0	12492	986	34	4		4	PPP2R4	9	131885446	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	545851	131885446	9327985	472	136159											
LAMC3	10319	broad.mit.edu	37	chr9	133932433	133932433	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacgggccagttctgtgaatCctgtgctccgggatacaaga	12	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133932433	G	G	133932433	3	3	164	1	0	0	0	0	1	0	0	0	8688	855	30	4	2103	4	LAMC3	9	133932433	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2046987	133932433	7280998	473	136160											
NUP214	8021	broad.mit.edu	37	chr9	134026318	134026318	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgagttcaaatcctaccTtcagcacttaataaattatg	4	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134026318	G	G	134026318	1	3	164	0	1	0	0	0	0	0	0	0	10857	1624	56	5		5	NUP214	9	134026318	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	93885	134026318	7187113	474	136161											
TSC1	7248	broad.mit.edu	37	chr9	135781380	135781381	+	Missense_Mutation	DNP	CG	AA	AA													aggctcagggttcacgctggCgccctgagaactggaggctg					rs149439187		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	135781381	AA	AA	135781380	3	1	164	1	0	0	0	0	1	0	0	0	16730	768	27	3	1945	3	TSC1	9	135781380	Missense_Mutation	DNP	CG	TCGA-50-5941-01A-11D-1753-08	1755062	135781380	5432051	475	136162											
ENTPD2	954	broad.mit.edu	37	chr9	139945644	139945644	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacgccccctggctctttGgctggctgctgggcccacct	11	19	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139945644	A	A	139945644	1	1	164	0	1	0	0	0	0	0	0	0	5181	1363	47	4		4	ENTPD2	9	139945644	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4164264	139945644	1267787	476	136163											
EHMT1	79813	broad.mit.edu	37	chr9	140646836	140646836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggacaccggggaggaggaGgaaggcggtgacgagtctga	21	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140646836	T	T	140646836	3	4	164	1	0	0	0	0	1	0	0	0	5023	991	35	2	1250	2	EHMT1	9	140646836	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	701192	140646836	566595	477	136164											
GDI2	2665	broad.mit.edu	37	chr10	5827102	5827102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggttttaaacacaggctctTaccttgcaaatccttggggc	9	10	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827102	A	A	5827102	1	1	164	0	1	0	0	0	0	0	0	0	6385	1769	61	5		5	GDI2	10	5827102	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08		5827102	129707645	478	136165											
KIN	22944	broad.mit.edu	37	chr10	7804421	7804421	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgcaaacagatttaccTggtgctggaattactgtctc	10	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7804421	A	A	7804421	2	1	164	1	0	0	0	0	0	0	0	1	8386	1594	55	5		5	KIN	10	7804421	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	1977319	7804421	127730326	479	136166											
BEND7	222389	broad.mit.edu	37	chr10	13494470	13494470	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaataacctagagccaagTattgtactttataaagtcta	6	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13494470	A	A	13494470	1	1	164	0	1	0	0	0	0	0	0	0	1408	1653	57	5		5	BEND7	10	13494470	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	5690049	13494470	122040277	480	136167											
FAM171A1	221061	broad.mit.edu	37	chr10	15290756	15290756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccggcgttccattactGctcagcaagtggacgctgac	11	13	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15290756	T	T	15290756	3	4	164	1	0	0	0	0	1	0	0	0	5535	1310	46	3	2052	3	FAM171A1	10	15290756	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1796286	15290756	120243991	481	136168											
ITGA8	8516	broad.mit.edu	37	chr10	15639265	15639265	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caccatcctggttacattttCcatcttgtactcacagctca	4	14	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15639265	G	G	15639265	3	3	164	1	0	0	0	0	1	0	0	0	7952	864	30	4	1079	4	ITGA8	10	15639265	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	348509	15639265	119895482	482	136169											
FAM188A	80013	broad.mit.edu	37	chr10	15820911	15820911	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgataccagtgtttagCttaatccagccaattgccag	8	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15820911	A	A	15820911	1	1	164	0	1	0	0	0	0	0	0	0	5560	812	28	3		3	FAM188A	10	15820911	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	181646	15820911	119713836	483	136170											
ST8SIA6	338596	broad.mit.edu	37	chr10	17362912	17362912	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgctaaattgcagtttgaGgattcctttcatgtgaagtt	9	5	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17362912	C	C	17362912	3	2	164	1	0	0	0	0	1	0	0	0	15354	1000	35	4	38	4	ST8SIA6	10	17362912	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1542001	17362912	118171835	484	136171											
ST8SIA6	338596	broad.mit.edu	37	chr10	17373574	17373574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaggaaaaggatgaaaaGgaagccaaagtataagatta	11	3	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17373574	T	T	17373574	1	4	164	0	1	0	0	0	0	0	0	0	15354	1015	35	2		2	ST8SIA6	10	17373574	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	10662	17373574	118161173	485	136172											
SLC39A12	221074	broad.mit.edu	37	chr10	18242091	18242091	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgttgcaggcacaataattGaaggctttatttttcccctt	7	8	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18242091	A	A	18242091	1	1	164	0	1	0	0	0	0	0	0	0	14729	1305	45	4		4	SLC39A12	10	18242091	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	868517	18242091	117292656	486	136173											
NSUN6	221078	broad.mit.edu	37	chr10	18940128	18940128	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatatcttagggaaaataGacatttttcctgttgtttag	8	4	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18940128	C	C	18940128	3	2	164	1	0	0	0	0	1	0	0	0	10777	942	33	4	1448	4	NSUN6	10	18940128	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	698037	18940128	116594619	487	136174											
GAD2	2572	broad.mit.edu	37	chr10	26582019	26582019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttaggagacagcctacCtgggtacatgggcccattcc	12	13	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26582019	A	A	26582019	1	1	164	0	1	0	0	0	0	0	0	0	6240	696	24	2		2	GAD2	10	26582019	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	7641891	26582019	108952728	488	136175											
APBB1IP	54518	broad.mit.edu	37	chr10	26848972	26848972	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttttaaatttcctgacaGgtgctttgacctcctaatac	5	9	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26848972	C	C	26848972	1	2	164	0	1	0	0	0	0	0	0	0	762	1015	35	4		4	APBB1IP	10	26848972	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	266953	26848972	108685775	489	136176											
MPP7	143098	broad.mit.edu	37	chr10	28436394	28436394	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgaaggtatttattaccGgcgtaacatgtcctcacctt	8	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28436394	A	A	28436394	1	1	164	0	1	0	0	0	0	0	0	0	9833	1131	39	4		4	MPP7	10	28436394	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1587422	28436394	107098353	490	136177											
OR13A1	79290	broad.mit.edu	37	chr10	45799084	45799084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacatgcacaccacggtgaGgtgggaagagcaggtggaga	16	7	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45799084	T	T	45799084	3	4	164	1	0	0	0	0	1	0	0	0	11027	1000	35	2	203	2	OR13A1	10	45799084	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	17362690	45799084	89735663	491	136178											
SLC18A3	6572	broad.mit.edu	37	chr10	50820036	50820036	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcgccatgtctcagtctAtggcagcgtctacgccatcg	11	14	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50820036	T	T	50820036	3	4	164	1	0	0	0	0	1	0	0	0	14540	449	16	5	1252	5	SLC18A3	10	50820036	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	5020952	50820036	84714711	492	136179											
PCDH15	65217	broad.mit.edu	37	chr10	55582022	55582022	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggcaaggaatagaaggagGtggtggaggaagaggagttg	21	1	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55582022	C	C	55582022	3	2	164	1	0	0	0	0	1	0	0	0	11605	1261	44	4	2013	4	PCDH15	10	55582022	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4761986	55582022	79952725	493	136180											
JMJD1C	221037	broad.mit.edu	37	chr10	64953315	64953315	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttacaatattttgtatTataattgggaataacggagg	8	3	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64953315	C	C	64953315	1	2	164	0	1	0	0	0	0	0	0	0	8020	1769	61	5		5	JMJD1C	10	64953315	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	9371293	64953315	70581432	494	136181											
MYPN	84665	broad.mit.edu	37	chr10	69957180	69957180	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccgaccacatttcctgcAggctcctggggatatggtag	11	11	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69957180	C	C	69957180	3	2	164	1	0	0	0	0	1	0	0	0	10192	188	7	5	3288	5	MYPN	10	69957180	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	5003865	69957180	65577567	495	136182											
SAR1A	56681	broad.mit.edu	37	chr10	71913618	71913618	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtggtctgtccataaagCccaaatatctcacggagttt	8	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71913618	G	G	71913618	2	3	164	1	0	0	0	0	0	0	0	1	13951	726	26	4		4	SAR1A	10	71913618	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	1956438	71913618	63621129	496	136183											
SAR1A	56681	broad.mit.edu	37	chr10	71920720	71920720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgggaggcacaaaaaaaAtaagtcaataaacatgcttt	8	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71920720	T	T	71920720	1	4	164	0	1	0	0	0	0	0	0	0	13951	116	4	5		5	SAR1A	10	71920720	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	7102	71920720	63614027	497	136184											
FUT11	170384	broad.mit.edu	37	chr10	75533453	75533453	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggatgccgagaaagcccAcgcggcctctcccggggaca	14	15	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75533453	T	T	75533453	3	4	164	1	0	0	0	0	1	0	0	0	6163	159	6	5	1220	5	FUT11	10	75533453	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	3612733	75533453	60001294	498	136185											
SH2D4B	387694	broad.mit.edu	37	chr10	82348575	82348575	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagggagaccagtcccgcCtccccacccacctcctccca	8	22	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82348575	T	T	82348575	1	4	164	0	1	0	0	0	0	0	0	0	14349	696	24	4		4	SH2D4B	10	82348575	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6815122	82348575	53186172	499	136186											
HECTD2	143279	broad.mit.edu	37	chr10	93220264	93220264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatcatccgaaatgaagGccccagtccttccagaacct	6	15	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93220264	T	T	93220264	3	4	164	1	0	0	0	0	1	0	0	0	7107	1203	42	3	359	3	HECTD2	10	93220264	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	10871689	93220264	42314483	500	136187											
ABCC2	1244	broad.mit.edu	37	chr10	101591910	101591910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagtatctcaagaactgtcAggtggtgtgtttatatactg	10	5	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101591910	T	T	101591910	1	4	164	0	1	0	0	0	0	0	0	0	53	203	7	5		5	ABCC2	10	101591910	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	8371646	101591910	33942837	501	136188											
BTRC	8945	broad.mit.edu	37	chr10	103292158	103292158	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtatgatgatcagaaaaTagtaagcggccttcgagaca	10	7	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103292158	C	C	103292158	3	2	164	1	0	0	0	0	1	0	0	0	1579	1406	49	5	977	5	BTRC	10	103292158	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	1700248	103292158	32242589	502	136189											
CCDC147	159686	broad.mit.edu	37	chr10	106209934	106209934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaaagaagaaatacctcGctcagaaacgtaaagaacaa	6	7	1	4	rs138183014		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106209934	T	T	106209934	3	4	164	1	0	0	0	0	1	0	0	0	2807	1087	38	3	2548	3	CCDC147	10	106209934	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2917776	106209934	29324813	503	136190											
SORCS1	114815	broad.mit.edu	37	chr10	108923853	108923853	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggctttgtccgggtcccgCtcccgagtcccaggctcctg	13	16	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108923853	G	G	108923853	3	3	164	1	0	0	0	0	1	0	0	0	15044	796	28	4	3412	4	SORCS1	10	108923853	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2713919	108923853	26610894	504	136191											
HABP2	3026	broad.mit.edu	37	chr10	115334134	115334134	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacttacccacgctgagaatCctgactggtactacactgag	8	13	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115334134	A	A	115334134	3	1	164	1	0	0	0	0	1	0	0	0	7004	855	30	3	203	3	HABP2	10	115334134	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	6410281	115334134	20200613	505	136192											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118220524	118220524	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaacactccaaaggaagtCaggctagacccctcggatgc	9	14	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118220524	A	A	118220524	2	1	164	1	0	0	0	0	0	0	0	1	12247	813	29	3		3	PNLIPRP3	10	118220524	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	2886390	118220524	17314223	506	136193											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118360618	118360618	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccagatcaaggatgccCacagatgggtcactatgctg	12	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118360618	T	T	118360618	3	4	164	1	0	0	0	0	1	0	0	0	12245	594	21	4	1002	4	PNLIPRP1	10	118360618	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	140094	118360618	17174129	507	136194											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118386413	118386414	+	Missense_Mutation	DNP	GG	CA	CA													aaggtgaactgcatctgtgtGgactggaggcacgggtcccg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	118386414	CA	CA	118386413	3	2	164	1	0	0	0	0	1	0	0	0	12246	1335	47	4	389	4	PNLIPRP2	10	118386413	Missense_Mutation	DNP	GG	TCGA-50-5941-01A-11D-1753-08	25795	118386413	17148334	508	136195											
KCNK18	338567	broad.mit.edu	37	chr10	118960839	118960839	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctcacggtggccctgtgAagggtgggtttctgggtggc	17	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118960839	T	T	118960839	1	4	164	0	1	0	0	0	0	0	0	0	8135	261	9	5		5	KCNK18	10	118960839	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	574426	118960839	16573908	509	136196											
SLC18A2	6571	broad.mit.edu	37	chr10	119026618	119026618	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctttgggcaagaatcacCaagaaacattttacgtttga	9	8	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119026618	A	A	119026618	1	1	164	0	1	0	0	0	0	0	0	0	14539	609	21	2		2	SLC18A2	10	119026618	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	65779	119026618	16508129	510	136197											
INPP5F	22876	broad.mit.edu	37	chr10	121551247	121551247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagaaaatttatttttaaAccatttgttgtattgaagca	5	5	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121551247	T	T	121551247	1	4	164	0	1	0	0	0	0	0	0	0	7828	58	2	5		5	INPP5F	10	121551247	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	2524629	121551247	13983500	511	136198											
DMBT1	1755	broad.mit.edu	37	chr10	124345771	124345771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcccggtttggtcaggGctcaggacccattgtcctgg	13	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124345771	T	T	124345771	3	4	164	1	0	0	0	0	1	0	0	0	4617	1203	42	3	1717	3	DMBT1	10	124345771	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2794524	124345771	11188976	512	136199											
CPXM2	119587	broad.mit.edu	37	chr10	125528294	125528294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaacacttagggccaaaCggtgcttgtcacattgtgtt	10	8	1	1	rs115623953	by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125528294	A	A	125528294	1	1	164	0	1	0	0	0	0	0	0	0	3870	551	19	3		3	CPXM2	10	125528294	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1182523	125528294	10006453	513	136200											
CPXM2	119587	broad.mit.edu	37	chr10	125558608	125558608	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccaggaagaaaggcatgGttaaatggaggatgagactc	14	6	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125558608	C	C	125558608	1	2	164	0	1	0	0	0	0	0	0	0	3870	1276	44	4		4	CPXM2	10	125558608	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	30314	125558608	9976139	514	136201											
PSMD13	5719	broad.mit.edu	37	chr11	249047	249047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagactctgaagactgcctGgggccagcaggtaggactcc	13	13	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	249047	T	T	249047	3	4	164	1	0	0	0	0	1	0	0	0	12802	1357	47	2	879	2	PSMD13	11	249047	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08		249047	134757469	515	136202											
OR51F1	256892	broad.mit.edu	37	chr11	4790230	4790230	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattttgtaagcagcagactGagcatagccttgcggatttg	11	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4790230	A	A	4790230	2	1	164	1	0	0	0	0	0	0	0	1	11190	1277	45	4		4	OR51F1	11	4790230	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4541183	4790230	130216286	516	136203											
OR51F2	119694	broad.mit.edu	37	chr11	4843470	4843470	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccattcagcacctccattTgtccacatcatcatggccaa	6	15	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4843470	G	G	4843470	3	3	164	1	0	0	0	0	1	0	0	0	11191	1809	63	5	857	5	OR51F2	11	4843470	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	53240	4843470	130163046	517	136204											
OR52B2	255725	broad.mit.edu	37	chr11	6191076	6191076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttcagcaagaatatgaCtgggaagatgatgcagaagc	12	8	1	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6191076	A	A	6191076	3	1	164	1	0	0	0	0	1	0	0	0	11205	565	20	3	493	3	OR52B2	11	6191076	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1347606	6191076	128815440	518	136205											
NLRP14	338323	broad.mit.edu	37	chr11	7070935	7070935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttccctgatggttgtcaGgatatctctacttctttgat	7	9	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7070935	T	T	7070935	3	4	164	1	0	0	0	0	1	0	0	0	10571	991	35	2	2175	2	NLRP14	11	7070935	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	879859	7070935	127935581	519	136206											
CALCB	797	broad.mit.edu	37	chr11	15096262	15096262	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcctttacagagaggcGgcatgggtttccggaagttc	12	10	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15096262	T	T	15096262	1	4	164	0	1	0	0	0	0	0	0	0	2602	1131	39	1		1	CALCB	11	15096262	5'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	8025327	15096262	119910254	520	136207											
INSC	387755	broad.mit.edu	37	chr11	15199812	15199812	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttctggcccgtgcaacaTttctgggctgaccacatgcc	10	14	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15199812	C	C	15199812	1	2	164	0	1	0	0	0	0	0	0	0	7834	1508	52	5		5	INSC	11	15199812	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	103550	15199812	119806704	521	136208											
GTF2H1	2965	broad.mit.edu	37	chr11	18361082	18361082	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctttccctgatgctctaaCgtgtatgtgtgtatgggctt	10	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18361082	T	T	18361082	1	4	164	0	1	0	0	0	0	0	0	0	6925	551	19	4		4	GTF2H1	11	18361082	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	3161270	18361082	116645434	522	136209											
LDHAL6A	160287	broad.mit.edu	37	chr11	18485688	18485688	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacaagtatctaagaaaatCatctttatttcttttgacct	4	7	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18485688	A	A	18485688	1	1	164	0	1	0	0	0	0	0	0	0	8771	841	29	3		3	LDHAL6A	11	18485688	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	124606	18485688	116520828	523	136210											
NELL1	4745	broad.mit.edu	37	chr11	21191533	21191533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagggacagtgcaatgcgGgctcctcaggcttttgagca	14	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21191533	T	T	21191533	1	4	164	0	1	0	0	0	0	0	0	0	10428	1247	43	2		2	NELL1	11	21191533	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2705845	21191533	113814983	524	136211											
NELL1	4745	broad.mit.edu	37	chr11	21594744	21594745	+	Frame_Shift_Ins	INS	-	T	T													ctacaggaaggagaggtagaINSttgctggccactcacttgcc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21594745	T	T	21594744	7	5	164	1	0	1	1	0	0	0	0	0	10428	333	12	0	2245	0	NELL1	11	21594744	Frame_Shift_Ins	INS	-	TCGA-50-5941-01A-11D-1753-08	403211	21594744	113411772	525	136212											
SLC5A12	159963	broad.mit.edu	37	chr11	26700146	26700146	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtagacatctctgtgggaaGaagggtttttgtgggaaacg	15	4	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26700146	A	A	26700146	1	1	164	0	1	0	0	0	0	0	0	0	14778	957	33	4		4	SLC5A12	11	26700146	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5105402	26700146	108306370	526	136213											
KCNA4	3739	broad.mit.edu	37	chr11	30032774	30032774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggatgaccccaatgaagagGaagaagatcagaaggcccag	13	8	1	6			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30032774	T	T	30032774	3	4	164	1	0	0	0	0	1	0	0	0	8075	1165	41	3	513	3	KCNA4	11	30032774	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	3332628	30032774	104973742	527	136214											
KCNA4	3739	broad.mit.edu	37	chr11	30032822	30032822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctggctctgagggtgtgGcccaggatctgcaggccttt	15	10	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30032822	T	T	30032822	2	4	164	1	0	0	0	0	0	0	0	1	8075	1190	42	3		3	KCNA4	11	30032822	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	48	30032822	104973694	528	136215											
C11orf46	120534	broad.mit.edu	37	chr11	30352778	30352778	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatttgcatgtaattgacTtagatgatgccacttttctg	7	6	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30352778	G	G	30352778	3	3	164	1	0	0	0	0	1	0	0	0	1655	1606	56	5	285	5	C11orf46	11	30352778	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	319956	30352778	104653738	529	136216											
WT1	7490	broad.mit.edu	37	chr11	32413601	32413601	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaagttttacactggaatGgtttcacacctaaatggaca	8	8	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32413601	T	T	32413601	3	4	164	1	0	0	0	0	1	0	0	0	17535	1348	47	2	212	2	WT1	11	32413601	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2060823	32413601	102592915	530	136217											
LRRC4C	57689	broad.mit.edu	37	chr11	40136858	40136858	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgggaggagtgttacaccGggcacaacaagctgtgttcg	14	8	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40136858	A	A	40136858	3	1	164	1	0	0	0	0	1	0	0	0	9095	1115	39	4	941	4	LRRC4C	11	40136858	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	7723257	40136858	94869658	531	136218											
LRRC4C	57689	broad.mit.edu	37	chr11	40137192	40137192	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctcatctagttttatgagCggtgtgaggttagggatttc	13	5	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40137192	G	G	40137192	2	3	164	1	0	0	0	0	0	0	0	1	9095	755	27	4		4	LRRC4C	11	40137192	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	334	40137192	94869324	532	136219											
DGKZ	8525	broad.mit.edu	37	chr11	46400077	46400077	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccaggctccagttccttCccccagcagctccctcgggc	9	20	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46400077	T	T	46400077	1	4	164	0	1	0	0	0	0	0	0	0	4514	870	30	4		4	DGKZ	11	46400077	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6262885	46400077	88606439	533	136220											
CKAP5	9793	broad.mit.edu	37	chr11	46783744	46783744	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccagctcttccaggcactCtgatgggggagaaaggctag	13	11	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46783744	A	A	46783744	5	1	164	1	0	0	0	0	0	0	1	0	3476	927	32	3	2123	3	CKAP5	11	46783744	Splice_Site	SNP	C	TCGA-50-5941-01A-11D-1753-08	383667	46783744	88222772	534	136221											
SLC39A13	91252	broad.mit.edu	37	chr11	47381379	47381379	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcctggcagtctcctgggGgacggggcaggcggtggcat	20	10	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47381379	A	A	47381379	1	1	164	0	1	0	0	0	0	0	0	0	14730	1247	43	4		4	SLC39A13	11	47381379	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	597635	47381379	87625137	535	136222											
OR4A47	403253	broad.mit.edu	37	chr11	48511136	48511136	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacctgctaggaccttcccCattgacaaatcagtgagtgt	9	11	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48511136	T	T	48511136	2	4	164	1	0	0	0	0	0	0	0	1	11136	581	21	4		4	OR4A47	11	48511136	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	1129757	48511136	86495380	536	136223											
TRIM48	79097	broad.mit.edu	37	chr11	55032690	55032690	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacaaagaagatgttctGtgaagtggacaggagcctgc	15	6	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55032690	T	T	55032690	3	4	164	1	0	0	0	0	1	0	0	0	16648	1377	48	3	365	3	TRIM48	11	55032690	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	6521554	55032690	79973826	537	136224											
TRIM48	79097	broad.mit.edu	37	chr11	55036774	55036774	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatctagcgctcagggcagGgcccatcactggactgaggg	15	11	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55036774	A	A	55036774	3	1	164	1	0	0	0	0	1	0	0	0	16648	1232	43	4	653	4	TRIM48	11	55036774	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4084	55036774	79969742	538	136225											
OR4C15	81309	broad.mit.edu	37	chr11	55322383	55322383	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcattctgatgggggtaGcctggacagggggcctcttg	18	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55322383	A	A	55322383	3	1	164	1	0	0	0	0	1	0	0	0	11142	971	34	4	603	4	OR4C15	11	55322383	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	285609	55322383	79684133	539	136226											
OR4C16	219428	broad.mit.edu	37	chr11	55340091	55340091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatttttcttgccctgaGtttgccattctgtggcccca	8	12	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55340091	T	T	55340091	3	4	164	1	0	0	0	0	1	0	0	0	11143	1029	36	3	490	3	OR4C16	11	55340091	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	17708	55340091	79666425	540	136227											
OR5D14	219436	broad.mit.edu	37	chr11	55563864	55563864	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagtcaaagtggcctctgTattttacacagttgtcaacc	7	10	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563864	A	A	55563864	3	1	164	1	0	0	0	0	1	0	0	0	11249	1638	57	5	835	5	OR5D14	11	55563864	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	223773	55563864	79442652	541	136228											
OR5I1	10798	broad.mit.edu	37	chr11	55703071	55703071	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taattttatcagtgtttggaGaatacaggtagctgggccgt	12	5	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55703071	A	A	55703071	3	1	164	1	0	0	0	0	1	0	0	0	11258	942	33	4	141	4	OR5I1	11	55703071	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	139207	55703071	79303445	542	136229											
OR10AG1	282770	broad.mit.edu	37	chr11	55735247	55735247	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actattaggtgagatgagcaGgtggagaaggctttagcctt	14	5	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55735247	A	A	55735247	2	1	164	1	0	0	0	0	0	0	0	1	10991	987	35	4		4	OR10AG1	11	55735247	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	32176	55735247	79271269	543	136230											
OR8J3	81168	broad.mit.edu	37	chr11	55905297	55905298	+	5'Flank	DNP	GG	TT	TT													agatggcaaggacaattcctGggtgtgatcttcttgtcatg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55905298	TT	TT	55905297	1	4	164	0	1	0	0	0	0	0	0	0	11336	1363	47	2		2	OR8J3	11	55905297	5'Flank	DNP	GG	TCGA-50-5941-01A-11D-1753-08	170050	55905297	79101219	544	136231											
OR5T3	390154	broad.mit.edu	37	chr11	56020011	56020011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcactccaaaaatgttGgtcaatttcctggcaaaaaa	7	8	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56020011	T	T	56020011	3	4	164	1	0	0	0	0	1	0	0	0	11277	1339	47	2	338	2	OR5T3	11	56020011	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	114714	56020011	78986505	545	136232											
OR9G9	504191	broad.mit.edu	37	chr11	56468089	56468089	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctctggtattcttctgtcTacaccccaaagatcctagtg	6	12	4	1	rs62619921		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468089	A	A	56468089	3	1	164	1	0	0	0	0	1	0	0	0	11346	1522	53	5	228	5	OR9G9	11	56468089	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	448078	56468089	78538427	546	136233											
MRPL49	740	broad.mit.edu	37	chr11	64891944	64891944	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtgttgggtaggctaaTggagaaatgggatttttgtt	14	3	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64891944	G	G	64891944	1	3	164	0	1	0	0	0	0	0	0	0	9907	1479	51	5		5	MRPL49	11	64891944	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	8423855	64891944	70114572	547	136234											
EFEMP2	30008	broad.mit.edu	37	chr11	65635362	65635362	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtccccctgcgagtttccAgcacggatctgaaaggcatt	10	12	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65635362	T	T	65635362	2	4	164	1	0	0	0	0	0	0	0	1	4982	175	7	5		5	EFEMP2	11	65635362	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	743418	65635362	69371154	548	136235											
DPP3	10072	broad.mit.edu	37	chr11	66272113	66272113	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggggatgtggccggaGggcgggccctgtacgagggg	21	10	0	0	rs35493089		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66272113	C	C	66272113	3	2	164	1	0	0	0	0	1	0	0	0	4768	1000	35	4	1971	4	DPP3	11	66272113	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	636751	66272113	68734403	549	136236											
CTSF	8722	broad.mit.edu	37	chr11	66332545	66332545	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcacagccagaaatgaacTaagccctctacgcgaggttt	8	11	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66332545	A	A	66332545	1	1	164	0	1	0	0	0	0	0	0	0	4068	1537	53	5		5	CTSF	11	66332545	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	60432	66332545	68673971	550	136237											
NUDT8	254552	broad.mit.edu	37	chr11	67395479	67395479	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtgaagccaggggctgctTagggcgggccagaccctcag	18	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67395479	A	A	67395479	4	1	164	1	0	0	0	0	0	1	0	0	10840	1769	61	5		5	NUDT8	11	67395479	Nonsense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	1062934	67395479	67611037	551	136238											
NARS2	79731	broad.mit.edu	37	chr11	78147603	78147603	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgatatcttatggcacaaCaattacatattgaaatctgc	5	7	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78147603	A	A	78147603	1	1	164	0	1	0	0	0	0	0	0	0	10265	493	17	3		3	NARS2	11	78147603	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	10752124	78147603	56858913	552	136239											
ODZ4	26011	broad.mit.edu	37	chr11	78443641	78443641	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgtttgggaggggaaggTtgagaaggggcggggagcag	23	3	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78443641	A	A	78443641	1	1	164	0	1	0	0	0	0	0	0	0	10932	1740	60	5		5	ODZ4	11	78443641	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	296038	78443641	56562875	553	136240											
DLG2	1740	broad.mit.edu	37	chr11	83525469	83525469	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgctatttctcttcttctAtaatttcagaatgatagctt	4	8	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83525469	G	G	83525469	1	3	164	0	1	0	0	0	0	0	0	0	4595	464	16	5		5	DLG2	11	83525469	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	5081828	83525469	51481047	554	136241											
SYTL2	54843	broad.mit.edu	37	chr11	85435010	85435010	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatcccaattaaaaaaaaTcatcctttacatcagcattc	1	10	2	0	rs72355598		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85435010	C	C	85435010	1	2	164	0	1	0	0	0	0	0	0	0	15602	1450	50	5		5	SYTL2	11	85435010	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	1909541	85435010	49571506	555	136242											
TRIM49	57093	broad.mit.edu	37	chr11	89537473	89537473	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgctcggttgactttgtGcattcagagcactggacaag	11	9	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89537473	A	A	89537473	2	1	164	1	0	0	0	0	0	0	0	1	16649	1311	46	4		4	TRIM49	11	89537473	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4102463	89537473	45469043	556	136243											
FAT3	120114	broad.mit.edu	37	chr11	92534672	92534672	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagggatgcctgttggcacCaaactcacacaagtgagagc	12	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92534672	G	G	92534672	2	3	164	1	0	0	0	0	0	0	0	1	5748	581	21	4		4	FAT3	11	92534672	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	2997199	92534672	42471844	557	136244											
MMP7	4316	broad.mit.edu	37	chr11	102398129	102398130	+	Intron	DNP	TA	CT	CT													ataatattgctaaatctatcTattaactatctatctaccaa							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	102398130	CT	CT	102398129	1	2	164	0	1	0	0	0	0	0	0	0	9761	1537	53	5		5	MMP7	11	102398129	Intron	DNP	TA	TCGA-50-5941-01A-11D-1753-08	9863457	102398129	32608387	558	136245											
CASP1	834	broad.mit.edu	37	chr11	104937552	104937552	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctcccgttattttagaaaGactatcaaactcttcgttgc	6	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104937552	A	A	104937552	1	1	164	0	1	0	0	0	0	0	0	0	2694	957	33	4		4	CASP1	11	104937552	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2539423	104937552	30068964	559	136246											
C11orf52	91894	broad.mit.edu	37	chr11	111794877	111794877	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccatccatgtgggagaggTgtggtacccttgactaatgt	12	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111794877	G	G	111794877	1	3	164	0	1	0	0	0	0	0	0	0	1659	1711	59	5		5	C11orf52	11	111794877	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	6857325	111794877	23211639	560	136247											
DIXDC1	85458	broad.mit.edu	37	chr11	111864309	111864309	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgatgtcagttaccaCcaggtcagaacatattcagc	7	12	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111864309	A	A	111864309	3	1	164	1	0	0	0	0	1	0	0	0	4581	506	18	3	1438	3	DIXDC1	11	111864309	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	69432	111864309	23142207	561	136248											
DSCAML1	57453	broad.mit.edu	37	chr11	117310107	117310107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccattggtgtggatgagcCggtgcccatccatggacact	13	11	0	1	rs61730454	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117310107	A	A	117310107	3	1	164	1	0	0	0	0	1	0	0	0	4809	652	23	1	2186	1	DSCAML1	11	117310107	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5445798	117310107	17696409	562	136249											
UBE4A	9354	broad.mit.edu	37	chr11	118244409	118244409	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatccatcaggtggaactGtttaccagggtatcccagcc	9	12	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118244409	A	A	118244409	1	1	164	0	1	0	0	0	0	0	0	0	17008	1392	48	4		4	UBE4A	11	118244409	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	934302	118244409	16762107	563	136250											
OR4D5	219875	broad.mit.edu	37	chr11	123810293	123810293	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatatgtccttttttcttaGcaggttcattgacaaggtca	7	7	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123810293	T	T	123810293	1	4	164	0	1	0	0	0	0	0	0	0	11151	986	34	3		3	OR4D5	11	123810293	5'Flank	SNP	G	TCGA-50-5941-01A-11D-1753-08	5565884	123810293	11196223	564	136251											
OR10G4	390264	broad.mit.edu	37	chr11	123886884	123886884	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatggtcatctttgtggaCattgggatagtggcctcagg	15	6	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123886884	T	T	123886884	2	4	164	1	0	0	0	0	0	0	0	1	10995	477	17	4		4	OR10G4	11	123886884	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	76591	123886884	11119632	565	136252											
OR10G4	390264	broad.mit.edu	37	chr11	123886904	123886904	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattgggatagtggcctcagGctgctttgtcctgatagtgc	13	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123886904	C	C	123886904	3	2	164	1	0	0	0	0	1	0	0	0	10995	1203	42	4	625	4	OR10G4	11	123886904	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	20	123886904	11119612	566	136253											
OR10G8	219869	broad.mit.edu	37	chr11	123900308	123900308	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttatattcccagagggaGagagaccaagggtgagaaga	13	6	1	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123900308	A	A	123900308	1	1	164	0	1	0	0	0	0	0	0	0	10997	957	33	4		4	OR10G8	11	123900308	5'Flank	SNP	G	TCGA-50-5941-01A-11D-1753-08	13404	123900308	11106208	567	136254											
SLC6A13	6540	broad.mit.edu	37	chr12	333523	333523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctccccagcacacacCcccccactcatctctcagcc	2	25	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	333523	A	A	333523	1	1	164	0	1	0	0	0	0	0	0	0	14790	638	22	2		2	SLC6A13	12	333523	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08		333523	133518372	568	136255											
FGF23	8074	broad.mit.edu	37	chr12	4488554	4488554	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgtagatggtctgatgGggtgcgccatccacatggcc	13	11	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4488554	T	T	4488554	2	4	164	1	0	0	0	0	0	0	0	1	5909	1219	43	2		2	FGF23	12	4488554	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4155031	4488554	129363341	569	136256											
KCNA1	3736	broad.mit.edu	37	chr12	5022097	5022097	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagacttaaaaaacaaaacaGaaaacctagtgactcatgtc	5	8	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5022097	C	C	5022097	1	2	164	0	1	0	0	0	0	0	0	0	8071	957	33	4		4	KCNA1	12	5022097	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	533543	5022097	128829798	570	136257											
VWF	7450	broad.mit.edu	37	chr12	6121229	6121229	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacatctctaacctttctttCaaagtcaacagaaaggaact	4	11	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6121229	G	G	6121229	1	3	164	0	1	0	0	0	0	0	0	0	17373	841	29	4		4	VWF	12	6121229	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1099132	6121229	127730666	571	136258											
CD163	9332	broad.mit.edu	37	chr12	7639558	7639558	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaaagacgatgaattgcacGaggacagtgtttgggactgg	14	7	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7639558	T	T	7639558	4	4	164	1	0	0	0	0	0	1	0	0	2997	1059	37	3	1427	3	CD163	12	7639558	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1518329	7639558	126212337	572	136259											
GRIN2B	2904	broad.mit.edu	37	chr12	13715647	13715647	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttcacccccgtcaccctcCgtgacatgcgcatcacgcga	8	18	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13715647	T	T	13715647	1	4	164	0	1	0	0	0	0	0	0	0	6846	667	23	4		4	GRIN2B	12	13715647	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	6076089	13715647	120136248	573	136260											
RERG	85004	broad.mit.edu	37	chr12	15262005	15262005	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaggggaacagaaggggaaGagtgtttccaattagttggt	15	3	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15262005	C	C	15262005	1	2	164	0	1	0	0	0	0	0	0	0	13340	957	33	4		4	RERG	12	15262005	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	1546358	15262005	118589890	574	136261											
PTPRO	5800	broad.mit.edu	37	chr12	15704327	15704327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctaagttacagttgacCaggaagaggtcattgctggc	12	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15704327	A	A	15704327	1	1	164	0	1	0	0	0	0	0	0	0	12917	609	21	2		2	PTPRO	12	15704327	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	442322	15704327	118147568	575	136262											
PDE3A	5139	broad.mit.edu	37	chr12	20803388	20803388	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctcaaataggtaaatgatGatgttggaatagattggacc	10	5	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20803388	A	A	20803388	3	1	164	1	0	0	0	0	1	0	0	0	11731	1290	45	4	2833	4	PDE3A	12	20803388	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5099061	20803388	113048507	576	136263											
SLCO1A2	6579	broad.mit.edu	37	chr12	21428305	21428305	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttttaccaaatactcttGtgcaaaatgtatgtaatccc	4	8	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21428305	C	C	21428305	3	2	164	1	0	0	0	0	1	0	0	0	14836	1377	48	4	360	4	SLCO1A2	12	21428305	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	624917	21428305	112423590	577	136264											
LDHB	3945	broad.mit.edu	37	chr12	21794870	21794870	+	Intron	DEL	T	-	-													acatcacaagtaattatttcTtttttttttctttaccactt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21794870	-	-	21794870	6	5	164	0	1	1	0	1	0	0	0	0	8773	1624	56	0		0	LDHB	12	21794870	Intron	DEL	T	TCGA-50-5941-01A-11D-1753-08	366565	21794870	112057025	578	136265											
KCNJ8	3764	broad.mit.edu	37	chr12	21926134	21926134	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggcattttgacattttttCtctactgttttcaacccctg	6	10	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21926134	T	T	21926134	1	4	164	0	1	0	0	0	0	0	0	0	8126	928	32	4		4	KCNJ8	12	21926134	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	131264	21926134	111925761	579	136266											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25398284	G	G	25398284	3	3	164	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3472150	25398284	108453611	580	136267											
ITPR2	3709	broad.mit.edu	37	chr12	26493144	26493144	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acccgacagctgtttgaccaGactcatggtcgattccaact	8	13	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26493144	C	C	26493144	3	2	164	1	0	0	0	0	1	0	0	0	7991	933	33	4	138	4	ITPR2	12	26493144	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1094860	26493144	107358751	581	136268											
PTHLH	5744	broad.mit.edu	37	chr12	28116578	28116578	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagttaggggacacctccGaggtagctctgatttcagct	13	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28116578	T	T	28116578	4	4	164	1	0	0	0	0	0	1	0	0	12867	1059	37	3	318	3	PTHLH	12	28116578	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1623434	28116578	105735317	582	136269											
OVCH1	341350	broad.mit.edu	37	chr12	29583892	29583892	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcagaaacggtttgctaaGgcaccaagcaatctcccaag	10	11	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29583892	C	C	29583892	1	2	164	0	1	0	0	0	0	0	0	0	11417	1015	35	4		4	OVCH1	12	29583892	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1467314	29583892	104268003	583	136270											
OVCH1	341350	broad.mit.edu	37	chr12	29614829	29614829	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgctgcaaagccagcacaGatcatcttctctgtgatccc	8	13	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29614829	T	T	29614829	2	4	164	1	0	0	0	0	0	0	0	1	11417	932	33	3		3	OVCH1	12	29614829	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	30937	29614829	104237066	584	136271											
TMTC1	83857	broad.mit.edu	37	chr12	29669365	29669365	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtctcctctgacacaatgtGattggtcatcttttcagctt	8	10	5	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29669365	A	A	29669365	3	1	164	1	0	0	0	0	1	0	0	0	16383	1290	45	4	440	4	TMTC1	12	29669365	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	54536	29669365	104182530	585	136272											
TMTC1	83857	broad.mit.edu	37	chr12	29709752	29709752	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaaagagtttcttggaatCgcaaggccacctgatcgatg	12	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29709752	A	A	29709752	1	1	164	0	1	0	0	0	0	0	0	0	16383	899	31	3		3	TMTC1	12	29709752	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	40387	29709752	104142143	586	136273											
CAPRIN2	65981	broad.mit.edu	37	chr12	30886543	30886543	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttagtatttactgcataagtCcagagtagagaaaactcaca	7	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30886543	A	A	30886543	1	1	164	0	1	0	0	0	0	0	0	0	2662	870	30	3		3	CAPRIN2	12	30886543	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1176791	30886543	102965352	587	136274											
DENND5B	160518	broad.mit.edu	37	chr12	31566360	31566360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaaatgtatcaaagatGgtatcttacttggtgagtgg	11	4	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31566360	T	T	31566360	1	4	164	0	1	0	0	0	0	0	0	0	4477	1363	47	2		2	DENND5B	12	31566360	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	679817	31566360	102285535	588	136275											
FGD4	121512	broad.mit.edu	37	chr12	32735271	32735271	+	Frame_Shift_Del	DEL	G	-	-													tgcttctgacagtagctacaGgactccaggcataggcccag							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32735271	-	-	32735271	7	5	164	1	0	1	0	1	0	0	0	0	5892	1000	35	0	476	0	FGD4	12	32735271	Frame_Shift_Del	DEL	G	TCGA-50-5941-01A-11D-1753-08	1168911	32735271	101116624	589	136276											
CNTN1	1272	broad.mit.edu	37	chr12	41337491	41337492	+	Missense_Mutation	DNP	GG	TT	TT													ctttgcagaaaataacagagGgaaagctaatagcactggaa							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	41337492	TT	TT	41337491	3	4	164	1	0	0	0	0	1	0	0	0	3672	1232	43	2	1518	2	CNTN1	12	41337491	Missense_Mutation	DNP	GG	TCGA-50-5941-01A-11D-1753-08	8602220	41337491	92514404	590	136277											
CNTN1	1272	broad.mit.edu	37	chr12	41374668	41374668	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaatgtgtgtttgactcaCtagatggaattcactgattc	8	7	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41374668	G	G	41374668	1	3	164	0	1	0	0	0	0	0	0	0	3672	580	20	4		4	CNTN1	12	41374668	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	37177	41374668	92477227	591	136278											
ADAMTS20	80070	broad.mit.edu	37	chr12	43826499	43826499	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggtcaccacagtagtggtCatcaacttgaacagtctgtc	9	11	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43826499	G	G	43826499	3	3	164	1	0	0	0	0	1	0	0	0	266	826	29	4	2975	4	ADAMTS20	12	43826499	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2451831	43826499	90025396	592	136279											
ADAMTS20	80070	broad.mit.edu	37	chr12	43925915	43925915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatataagatgtggcttgttGtgaccatcttcatattcatt	7	6	3	2	rs80268015		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43925915	T	T	43925915	3	4	164	1	0	0	0	0	1	0	0	0	266	1368	48	3	5342	3	ADAMTS20	12	43925915	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	99416	43925915	89925980	593	136280											
RPAP3	79657	broad.mit.edu	37	chr12	48073436	48073436	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattatacaacaaataaataTatttatgtttcagaaaatat	2	3	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48073436	C	C	48073436	1	2	164	0	1	0	0	0	0	0	0	0	13654	1421	49	5		5	RPAP3	12	48073436	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	4147521	48073436	85778459	594	136281											
KRT84	3890	broad.mit.edu	37	chr12	52774790	52774790	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtctccctcacctcattAgacttgggggttcccaaagc	9	13	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52774790	G	G	52774790	1	3	164	0	1	0	0	0	0	0	0	0	8569	435	15	5		5	KRT84	12	52774790	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	4701354	52774790	81077105	595	136282											
KRT6B	3854	broad.mit.edu	37	chr12	52843691	52843691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcacctttccaatctacCcatcttctagtcctcctgcc	3	18	4	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52843691	A	A	52843691	1	1	164	0	1	0	0	0	0	0	0	0	8552	638	22	2		2	KRT6B	12	52843691	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	68901	52843691	81008204	596	136283											
MAP3K12	7786	broad.mit.edu	37	chr12	53877180	53877180	+	Frame_Shift_Del	DEL	A	-	-													ggcacattcctcttcttgatAagcttctccattgtgtttcc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53877180	-	-	53877180	7	5	164	1	0	1	0	1	0	0	0	0	9338	349	13	0	1132	0	MAP3K12	12	53877180	Frame_Shift_Del	DEL	A	TCGA-50-5941-01A-11D-1753-08	1033489	53877180	79974715	597	136284											
OR6C6	283365	broad.mit.edu	37	chr12	55688106	55688106	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaaacacaaattctttTgtaatacatcccagaagact	4	8	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55688106	C	C	55688106	3	2	164	1	0	0	0	0	1	0	0	0	11288	1812	63	5	35	5	OR6C6	12	55688106	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	1810926	55688106	78163789	598	136285											
INHBC	3626	broad.mit.edu	37	chr12	57842987	57842987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatagacaactcaagaatgCtgagtacagagaaatagttg	9	6	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57842987	A	A	57842987	1	1	164	0	1	0	0	0	0	0	0	0	7813	812	28	3		3	INHBC	12	57842987	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2154881	57842987	76008908	599	136286											
MON2	23041	broad.mit.edu	37	chr12	62954583	62954583	+	Frame_Shift_Del	DEL	G	-	-													tgaagatttgaatctatggtGggctgcgtggaatacctggt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62954583	-	-	62954583	7	5	164	1	0	1	0	1	0	0	0	0	9794	1357	47	0	3824	0	MON2	12	62954583	Frame_Shift_Del	DEL	G	TCGA-50-5941-01A-11D-1753-08	5111596	62954583	70897312	600	136287											
DPY19L2	283417	broad.mit.edu	37	chr12	63977659	63977659	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctatttactgaaggtctttTatactatgaatacataaaaa	4	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63977659	A	A	63977659	1	1	164	0	1	0	0	0	0	0	0	0	4781	1769	61	5		5	DPY19L2	12	63977659	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	1023076	63977659	69874236	601	136288											
NAV3	89795	broad.mit.edu	37	chr12	78452876	78452876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagagaggggttcacgatGtgacagtggatgcagacagg	16	7	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78452876	T	T	78452876	3	4	164	1	0	0	0	0	1	0	0	0	10279	1377	48	3	2663	3	NAV3	12	78452876	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	14475217	78452876	55399019	602	136289											
NAV3	89795	broad.mit.edu	37	chr12	78569175	78569175	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtattggcagtggtaatgatGccgactccaagaagaagaaa	12	6	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78569175	C	C	78569175	3	2	164	1	0	0	0	0	1	0	0	0	10279	1319	46	4	5169	4	NAV3	12	78569175	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	116299	78569175	55282720	603	136290											
MYF6	4618	broad.mit.edu	37	chr12	81102500	81102500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacgcgccctgcgaaaagGgcgctctttgcgcgccggga	17	13	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81102500	T	T	81102500	1	4	164	0	1	0	0	0	0	0	0	0	10122	1247	43	2		2	MYF6	12	81102500	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2533325	81102500	52749395	604	136291											
LRRIQ1	84125	broad.mit.edu	37	chr12	85531700	85531700	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctattaagaatgaagaatccGatgaagaatacagagaaata	8	4	0	6			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85531700	A	A	85531700	3	1	164	1	0	0	0	0	1	0	0	0	9116	1058	37	4	4356	4	LRRIQ1	12	85531700	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4429200	85531700	48320195	605	136292											
GAS2L3	283431	broad.mit.edu	37	chr12	101011503	101011503	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattttgctgtataaaataaGtggttttattttccacagtt	6	4	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101011503	A	A	101011503	1	1	164	0	1	0	0	0	0	0	0	0	6310	1044	36	4		4	GAS2L3	12	101011503	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	15479803	101011503	32840392	606	136293											
SLC5A8	160728	broad.mit.edu	37	chr12	101603509	101603509	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaagtccttggaggtctGctggccgcccccagcgaagg	15	13	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101603509	T	T	101603509	3	4	164	1	0	0	0	0	1	0	0	0	14785	1328	46	3	1774	3	SLC5A8	12	101603509	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	592006	101603509	32248386	607	136294											
IGF1	3479	broad.mit.edu	37	chr12	102813420	102813420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcactcatccacgatgCctgtctgaggcgccctccga	10	16	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102813420	A	A	102813420	3	1	164	1	0	0	0	0	1	0	0	0	7640	739	26	3	390	3	IGF1	12	102813420	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1209911	102813420	31038475	608	136295											
WSCD2	9671	broad.mit.edu	37	chr12	108600180	108600180	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacaactgtgctgaacGgtagggtcccagcatcccag	12	13	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108600180	T	T	108600180	3	4	164	1	0	0	0	0	1	0	0	0	17534	1130	39	1	503	1	WSCD2	12	108600180	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5786760	108600180	25251715	609	136296											
ACACB	32	broad.mit.edu	37	chr12	109661794	109661794	+	Intron	SNP	C	A	A													atgcacctgaccctaggccaCatgccttggtgaatgtgatc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109661794	A	A	109661794	1	1	164	0	1	0	0	0	0	0	0	0	107	493	17	3		3	ACACB	12	109661794	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1061614	109661794	24190101	610	136297	581	2									
ACACB	32	broad.mit.edu	37	chr12	109661799	109661799	+	Intron	SNP	C	T	T													cctgaccctaggccacatgcCttggtgaatgtgatcctatc							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109661799	T	T	109661799	1	4	164	0	1	0	0	0	0	0	0	0	107	696	24	4		4	ACACB	12	109661799	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	5	109661799	24190096	611	136298	581	2									
PPTC7	160760	broad.mit.edu	37	chr12	110977584	110977584	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccataaaactcagctatccaGagagggccacttttcccaag	7	13	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110977584	A	A	110977584	1	1	164	0	1	0	0	0	0	0	0	0	12514	957	33	4		4	PPTC7	12	110977584	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1315785	110977584	22874311	612	136299											
CCDC63	160762	broad.mit.edu	37	chr12	111296569	111296569	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtgctgttggctgaacTggatgagaaggtgtggtctt	16	4	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111296569	G	G	111296569	3	3	164	1	0	0	0	0	1	0	0	0	2862	1580	55	5	369	5	CCDC63	12	111296569	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	318985	111296569	22555326	613	136300											
CUX2	23316	broad.mit.edu	37	chr12	111772477	111772477	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacacgtactccatcacCaagagggtgaaggaggtcct	12	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111772477	A	A	111772477	2	1	164	1	0	0	0	0	0	0	0	1	4098	581	21	2		2	CUX2	12	111772477	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	475908	111772477	22079418	614	136301											
OAS1	4938	broad.mit.edu	37	chr12	113344990	113344990	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggtgcttccgaggtaGctcctaccctgtgtgtgtgt	14	9	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113344990	C	C	113344990	3	2	164	1	0	0	0	0	1	0	0	0	10894	971	34	4	148	4	OAS1	12	113344990	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1572513	113344990	20506905	615	136302											
OAS2	4939	broad.mit.edu	37	chr12	113433282	113433282	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcactggcatcaacaggtAattttccaactgtctatata	6	9	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113433282	T	T	113433282	1	4	164	0	1	0	0	0	0	0	0	0	10895	377	13	5		5	OAS2	12	113433282	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	88292	113433282	20418613	616	136303											
MED13L	23389	broad.mit.edu	37	chr12	116410034	116410034	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacattctccaaggaggatActccaatctgaaatcaaata	6	9	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116410034	T	T	116410034	3	4	164	1	0	0	0	0	1	0	0	0	9524	388	14	5	917	5	MED13L	12	116410034	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	2976752	116410034	17441861	617	136304											
MED13L	23389	broad.mit.edu	37	chr12	116421096	116421096	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttatctggctaataccaGgagcagaggcagacgatgag	13	8	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116421096	A	A	116421096	3	1	164	1	0	0	0	0	1	0	0	0	9524	1000	35	4	1895	4	MED13L	12	116421096	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	11062	116421096	17430799	618	136305											
CIT	11113	broad.mit.edu	37	chr12	120214178	120214178	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataccttctccagtttcgcaTattctcccacttcaggcttc	4	15	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120214178	A	A	120214178	3	1	164	1	0	0	0	0	1	0	0	0	3469	1406	49	5	4344	5	CIT	12	120214178	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	3793082	120214178	13637717	619	136306											
LRRC43	254050	broad.mit.edu	37	chr12	122684775	122684775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacaagccctgggctgaGgtcatcccctgcagttacga	11	15	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122684775	T	T	122684775	3	4	164	1	0	0	0	0	1	0	0	0	9088	991	35	2	1419	2	LRRC43	12	122684775	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2470597	122684775	11167120	620	136307											
NOC4L	79050	broad.mit.edu	37	chr12	132635965	132635965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgcggctgcagcctggGgccaggggagggtggtgggg	23	8	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132635965	T	T	132635965	1	4	164	0	1	0	0	0	0	0	0	0	10610	1247	43	2		2	NOC4L	12	132635965	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	9951190	132635965	1215930	621	136308											
P2RX2	22953	broad.mit.edu	37	chr12	133196474	133196474	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctctccgacgccgactgCgtggctggggagctggacat	15	13	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133196474	A	A	133196474	4	1	164	1	0	0	0	0	0	1	0	0	11434	776	27	3	440	3	P2RX2	12	133196474	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	560509	133196474	655421	622	136309											
TPTE2	93492	broad.mit.edu	37	chr13	20024286	20024286	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccactcatttacttccttGgtgaaaaccaccatctcact	3	14	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20024286	C	C	20024286	2	2	164	1	0	0	0	0	0	0	0	1	16555	1335	47	4		4	TPTE2	13	20024286	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08		20024286	95145592	623	136310											
KATNAL1	84056	broad.mit.edu	37	chr13	30814495	30814495	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacataaacttctcccaaccTtttcaaaatgggttaaatac	3	10	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30814495	A	A	30814495	1	1	164	0	1	0	0	0	0	0	0	0	8055	1624	56	5		5	KATNAL1	13	30814495	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	10790209	30814495	84355383	624	136311											
HSPH1	10808	broad.mit.edu	37	chr13	31711466	31711466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaggttatctagtccaagtCcatattaacagaatttttct	5	7	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31711466	A	A	31711466	3	1	164	1	0	0	0	0	1	0	0	0	7501	855	30	3	14	3	HSPH1	13	31711466	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	896971	31711466	83458412	625	136312											
ENOX1	55068	broad.mit.edu	37	chr13	43933986	43933986	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttatgtaatgcaaagtaCcagaaaggtaaatggcttta	8	6	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43933986	G	G	43933986	5	3	164	1	0	0	0	0	0	0	1	0	5168	521	18	4	1385	4	ENOX1	13	43933986	Splice_Site	SNP	C	TCGA-50-5941-01A-11D-1753-08	12222520	43933986	71235892	626	136313											
NUDT15	55270	broad.mit.edu	37	chr13	48619794	48619794	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttagcatctttcttttctAggttgggagtgggttccttg	11	6	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48619794	T	T	48619794	5	4	164	1	0	0	0	0	0	0	1	0	10826	434	15	5	364	5	NUDT15	13	48619794	Splice_Site	SNP	A	TCGA-50-5941-01A-11D-1753-08	4685808	48619794	66550084	627	136314											
PCDH8	5100	broad.mit.edu	37	chr13	53422253	53422253	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgcgagaagctgaccacatCgaaggccagcacgcactgcg	12	14	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53422253	G	G	53422253	3	3	164	1	0	0	0	0	1	0	0	0	11611	884	31	4	2905	4	PCDH8	13	53422253	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4802459	53422253	61747625	628	136315											
OLFM4	10562	broad.mit.edu	37	chr13	53602884	53602884	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccactccctcttttcctaCatgctggccatggggaaatc	9	14	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53602884	A	A	53602884	1	1	164	0	1	0	0	0	0	0	0	0	10950	493	17	3		3	OLFM4	13	53602884	5'Flank	SNP	C	TCGA-50-5941-01A-11D-1753-08	180631	53602884	61566994	629	136316											
LMO7	4008	broad.mit.edu	37	chr13	76379705	76379705	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttatttggaagaggaaaaAgcaaagacaagaagcatacc	10	5	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76379705	T	T	76379705	3	4	164	1	0	0	0	0	1	0	0	0	8929	69	3	5	1199	5	LMO7	13	76379705	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	22776821	76379705	38790173	630	136317											
RBM26	64062	broad.mit.edu	37	chr13	79945047	79945047	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatttaaacatggagtttTtcataaaaagataaccaaaa	4	5	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79945047	C	C	79945047	1	2	164	0	1	0	0	0	0	0	0	0	13234	1856	64	5		5	RBM26	13	79945047	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	3565342	79945047	35224831	631	136318											
SLITRK1	114798	broad.mit.edu	37	chr13	84453826	84453826	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtgtctaggtaggagttgGagtgcgtcccggtctccgcc	16	10	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84453826	A	A	84453826	3	1	164	1	0	0	0	0	1	0	0	0	14856	1174	41	4	277	4	SLITRK1	13	84453826	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4508779	84453826	30716052	632	136319											
SLITRK6	84189	broad.mit.edu	37	chr13	86368638	86368638	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcagagggtctttcagtaGtgtgatgagtggttttatgg	16	3	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86368638	C	C	86368638	3	2	164	1	0	0	0	0	1	0	0	0	14861	1029	36	4	523	4	SLITRK6	13	86368638	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1914812	86368638	28801240	633	136320											
UGGT2	55757	broad.mit.edu	37	chr13	96519616	96519616	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactttgagtatcttgctttTgaagctgtttaatacaacaa	6	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96519616	G	G	96519616	3	3	164	1	0	0	0	0	1	0	0	0	17068	1821	63	5	1055	5	UGGT2	13	96519616	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	10150978	96519616	18650262	634	136321											
SLC15A1	6564	broad.mit.edu	37	chr13	99356687	99356687	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaagtcataaatgcattTgtctatagagggagggaaag	11	4	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99356687	C	C	99356687	2	2	164	1	0	0	0	0	0	0	0	1	14511	1799	63	5		5	SLC15A1	13	99356687	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	2837071	99356687	15813191	635	136322											
SLC15A1	6564	broad.mit.edu	37	chr13	99378453	99378453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagagccacaaacgtatGgtagatggcggtggacaggt	15	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99378453	T	T	99378453	3	4	164	1	0	0	0	0	1	0	0	0	14511	1348	47	2	2037	2	SLC15A1	13	99378453	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	21766	99378453	15791425	636	136323											
GPR183	1880	broad.mit.edu	37	chr13	99947695	99947696	+	Missense_Mutation	DNP	TT	GA	GA													gcctttttgtttacaccagaTttctcagtgagtgggttttg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	99947696	GA	GA	99947695	3	3	164	1	0	0	0	0	1	0	0	0	6743	1490	52	5	384	5	GPR183	13	99947695	Missense_Mutation	DNP	TT	TCGA-50-5941-01A-11D-1753-08	569242	99947695	15222183	637	136324											
NALCN	259232	broad.mit.edu	37	chr13	101756709	101756709	+	Missense_Mutation	SNP	T	A	A													acagcagttggagtgaaaaaTaagccatctgccataatctt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101756709	A	A	101756709	3	1	164	1	0	0	0	0	1	0	0	0	10242	1403	49	5	2470	5	NALCN	13	101756709	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	1809014	101756709	13413169	638	136325	582	2									
NALCN	259232	broad.mit.edu	37	chr13	101756712	101756712	+	Silent	SNP	G	A	A													gcagttggagtgaaaaataaGccatctgccataatcttcag							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101756712	A	A	101756712	2	1	164	1	0	0	0	0	0	0	0	1	10242	958	34	4		4	NALCN	13	101756712	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	3	101756712	13413166	639	136326	582	2									
MYO16	23026	broad.mit.edu	37	chr13	109644702	109644702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaggatgcccatttatcCtggtgtattgttttgtttca	8	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109644702	A	A	109644702	1	1	164	0	1	0	0	0	0	0	0	0	10158	696	24	2		2	MYO16	13	109644702	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	7887990	109644702	5525176	640	136327											
OR4K5	79317	broad.mit.edu	37	chr14	20389008	20389008	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttttgctacccctaaaatGattgcagattttctgagtgc	7	9	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20389008	T	T	20389008	3	4	164	1	0	0	0	0	1	0	0	0	11167	1290	45	3	245	3	OR4K5	14	20389008	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08		20389008	86960532	641	136328											
RNASE2	6036	broad.mit.edu	37	chr14	21424014	21424014	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggctcactccatgtcaaAcctccacagtttacctgggc	9	14	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21424014	T	T	21424014	3	4	164	1	0	0	0	0	1	0	0	0	13515	40	2	5	86	5	RNASE2	14	21424014	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	1035006	21424014	85925526	642	136329											
MYH6	4624	broad.mit.edu	37	chr14	23876236	23876236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatgccctactcaccttcCcattctcggtttcagcaatg	6	16	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23876236	A	A	23876236	3	1	164	1	0	0	0	0	1	0	0	0	10132	623	22	2	5770	2	MYH6	14	23876236	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2452222	23876236	83473304	643	136330											
MYH7	4625	broad.mit.edu	37	chr14	23894495	23894495	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgagatctctcacctacGttccagcagctttttgtact	6	12	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23894495	T	T	23894495	3	4	164	1	0	0	0	0	1	0	0	0	10133	1145	40	3	3468	3	MYH7	14	23894495	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	18259	23894495	83455045	644	136331											
MYH7	4625	broad.mit.edu	37	chr14	23898510	23898510	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtggcacagccccttgagCaggtcggctgagttcagccc	15	13	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23898510	G	G	23898510	2	3	164	1	0	0	0	0	0	0	0	1	10133	697	25	4		4	MYH7	14	23898510	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	4015	23898510	83451030	645	136332											
PCK2	5106	broad.mit.edu	37	chr14	24572135	24572135	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctccatgttcttggcaaaaGggctatctctgtattagggc	11	9	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24572135	C	C	24572135	1	2	164	0	1	0	0	0	0	0	0	0	11676	1015	35	4		4	PCK2	14	24572135	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	673625	24572135	82777405	646	136333											
RNF31	55072	broad.mit.edu	37	chr14	24626903	24626903	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggggtgccattggctttgAgagtcagaggctattgagga	18	5	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24626903	G	G	24626903	1	3	164	0	1	0	0	0	0	0	0	0	13598	319	11	5		5	RNF31	14	24626903	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	54768	24626903	82722637	647	136334											
NUBPL	80224	broad.mit.edu	37	chr14	32319279	32319279	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgagattcaaaatgcctAtatgaacttttctggttcta	7	6	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32319279	G	G	32319279	1	3	164	0	1	0	0	0	0	0	0	0	10812	464	16	5		5	NUBPL	14	32319279	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	7692376	32319279	75030261	648	136335											
AKAP6	9472	broad.mit.edu	37	chr14	33293463	33293463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgactcgggcttagatgaCaaggaagatattgaatgctt	11	6	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33293463	A	A	33293463	3	1	164	1	0	0	0	0	1	0	0	0	455	477	17	3	6490	3	AKAP6	14	33293463	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	974184	33293463	74056077	649	136336											
CTAGE5	4253	broad.mit.edu	37	chr14	39763376	39763376	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatagtaggatttgagatatAggggatcccagatatgtatt	11	3	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39763376	G	G	39763376	1	3	164	0	1	0	0	0	0	0	0	0	4028	435	15	5		5	CTAGE5	14	39763376	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	6469913	39763376	67586164	650	136337											
FKBP3	2287	broad.mit.edu	37	chr14	45603518	45603518	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtgaggcgtccctcagcCgcaccagcccggccgcccct	14	19	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45603518	T	T	45603518	1	4	164	0	1	0	0	0	0	0	0	0	5966	667	23	4		4	FKBP3	14	45603518	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	5840142	45603518	61746022	651	136338											
L2HGDH	79944	broad.mit.edu	37	chr14	50768900	50768900	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaacagctacagaacaagaGaaacagggtaagagtaagta	11	5	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50768900	C	C	50768900	1	2	164	0	1	0	0	0	0	0	0	0	8662	957	33	4		4	L2HGDH	14	50768900	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5165382	50768900	56580640	652	136339											
PELI2	57161	broad.mit.edu	37	chr14	56763705	56763705	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtagacgcaggaccgCcaactcatgctttcactccc	7	14	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56763705	T	T	56763705	3	4	164	1	0	0	0	0	1	0	0	0	11816	739	26	4	1106	4	PELI2	14	56763705	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5994805	56763705	50585835	653	136340											
DAAM1	23002	broad.mit.edu	37	chr14	59793303	59793303	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagatagttatccagaatgAcaaaggacaggaccctgact	10	9	0	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59793303	T	T	59793303	3	4	164	1	0	0	0	0	1	0	0	0	4248	275	10	5	1288	5	DAAM1	14	59793303	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	3029598	59793303	47556237	654	136341											
HSPA2	3306	broad.mit.edu	37	chr14	65008300	65008300	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgcatggtgagccacctgGcggaggagttcaagcgcaag	15	11	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65008300	A	A	65008300	3	1	164	1	0	0	0	0	1	0	0	0	7480	1203	42	4	735	4	HSPA2	14	65008300	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5214997	65008300	42341240	655	136342											
PLEKHH1	57475	broad.mit.edu	37	chr14	68045031	68045031	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcccagccagcgggcagcCtctgtgctccaagctgcatc	12	16	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68045031	G	G	68045031	1	3	164	0	1	0	0	0	0	0	0	0	12171	696	24	4		4	PLEKHH1	14	68045031	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	3036731	68045031	39304509	656	136343											
ZFYVE26	23503	broad.mit.edu	37	chr14	68222597	68222597	+	Intron	SNP	T	A	A													acagtctcattccctcatcgTgcactgcctctcctgcaggg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68222597	A	A	68222597	1	1	164	0	1	0	0	0	0	0	0	0	17794	1711	59	5		5	ZFYVE26	14	68222597	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	177566	68222597	39126943	657	136344	583	2									
ZFYVE26	23503	broad.mit.edu	37	chr14	68222599	68222599	+	Intron	SNP	C	G	G													agtctcattccctcatcgtgCactgcctctcctgcagggtg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68222599	G	G	68222599	1	3	164	0	1	0	0	0	0	0	0	0	17794	725	25	4		4	ZFYVE26	14	68222599	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2	68222599	39126941	658	136345	583	2									
MAP3K9	4293	broad.mit.edu	37	chr14	71209068	71209068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtccccggccactgacCagaagggaggctgatgcggt	15	13	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71209068	A	A	71209068	3	1	164	1	0	0	0	0	1	0	0	0	9349	608	21	2	1821	2	MAP3K9	14	71209068	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2986469	71209068	36140472	659	136346											
RGS6	9628	broad.mit.edu	37	chr14	73029227	73029227	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcggaccccacaggcaggcGgcggcgctccacatctgcgg	15	17	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73029227	A	A	73029227	1	1	164	0	1	0	0	0	0	0	0	0	13418	1131	39	4		4	RGS6	14	73029227	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	1820159	73029227	34320313	660	136347											
LTBP2	4053	broad.mit.edu	37	chr14	74967652	74967652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccggggagcagtggcagcGgtaggagccctctgtgttct	16	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74967652	T	T	74967652	3	4	164	1	0	0	0	0	1	0	0	0	9161	1116	39	1	68	1	LTBP2	14	74967652	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1938425	74967652	32381888	661	136348											
YLPM1	56252	broad.mit.edu	37	chr14	75264581	75264581	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaagcagaacctctttcaGgaaacaaagaaccattagca	6	11	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75264581	A	A	75264581	3	1	164	1	0	0	0	0	1	0	0	0	17613	1001	35	4	2599	4	YLPM1	14	75264581	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	296929	75264581	32084959	662	136349											
C14orf145	145508	broad.mit.edu	37	chr14	81244254	81244254	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagttgatccttcaaacatTgatattttagcttcagtttt	5	7	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81244254	A	A	81244254	3	1	164	1	0	0	0	0	1	0	0	0	1762	1812	63	5	976	5	C14orf145	14	81244254	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	5979673	81244254	26105286	663	136350											
YY1	7528	broad.mit.edu	37	chr14	100743846	100743846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagacaggccctatgtgtGccccttcgatggttgtaata	12	10	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100743846	T	T	100743846	3	4	164	1	0	0	0	0	1	0	0	0	17634	1319	46	3	1172	3	YY1	14	100743846	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	19499592	100743846	6605694	664	136351											
DYNC1H1	1778	broad.mit.edu	37	chr14	102496195	102496195	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttgaggataaagagccaaGagctggaggtgaagaatgca	14	5	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102496195	T	T	102496195	4	4	164	1	0	0	0	0	0	1	0	0	4881	943	33	3	9880	3	DYNC1H1	14	102496195	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1752349	102496195	4853345	665	136352											
TDRD9	122402	broad.mit.edu	37	chr14	104462107	104462107	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attattctgtccaccaatatTgcagagagttctgtcacagt	7	9	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104462107	A	A	104462107	2	1	164	1	0	0	0	0	0	0	0	1	15858	1800	63	5		5	TDRD9	14	104462107	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	1965912	104462107	2887433	666	136353											
AHNAK2	113146	broad.mit.edu	37	chr14	105410307	105410307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccaccttgggtgcagacacGtgcaccgaggcctcaatgga	12	13	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105410307	C	C	105410307	3	2	164	1	0	0	0	0	1	0	0	0	415	1136	40	4	5910	4	AHNAK2	14	105410307	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	948200	105410307	1939233	667	136354											
AHNAK2	113146	broad.mit.edu	37	chr14	105411915	105411915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggccagggacaggtccccCtccagccgtgcaccatccaa	10	18	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105411915	A	A	105411915	3	1	164	1	0	0	0	0	1	0	0	0	415	680	24	2	7518	2	AHNAK2	14	105411915	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1608	105411915	1937625	668	136355											
GABRG3	2567	broad.mit.edu	37	chr15	27725868	27725868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctgaccagaaatcatGgcggctttatcagtttgact	11	9	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27725868	T	T	27725868	3	4	164	1	0	0	0	0	1	0	0	0	6233	1357	47	2	669	2	GABRG3	15	27725868	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08		27725868	74805524	669	136356											
RYR3	6263	broad.mit.edu	37	chr15	33895447	33895447	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccacacatctgcgggtGggctgggcctcttcttcagg	14	13	4	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33895447	T	T	33895447	2	4	164	1	0	0	0	0	0	0	0	1	13881	1335	47	2		2	RYR3	15	33895447	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	6169579	33895447	68635945	670	136357											
RYR3	6263	broad.mit.edu	37	chr15	33962753	33962753	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggaggaggaggagagatgCcccagtaagtgacattgcct	15	8	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33962753	T	T	33962753	2	4	164	1	0	0	0	0	0	0	0	1	13881	747	26	4		4	RYR3	15	33962753	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	67306	33962753	68568639	671	136358											
UBR1	197131	broad.mit.edu	37	chr15	43281045	43281045	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatagtgaaagcgcaggtGctccaggtcagcatggggac	16	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43281045	A	A	43281045	2	1	164	1	0	0	0	0	0	0	0	1	17027	1310	46	4		4	UBR1	15	43281045	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	9318292	43281045	59250347	672	136359											
SLC28A2	9153	broad.mit.edu	37	chr15	45564558	45564558	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagggccctcttcacagggGcctgtgtatcccttatcagt	10	13	4	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45564558	C	C	45564558	3	2	164	1	0	0	0	0	1	0	0	0	14646	1203	42	4	1772	4	SLC28A2	15	45564558	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2283513	45564558	56966834	673	136360											
FBN1	2200	broad.mit.edu	37	chr15	48713085	48713085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaataagaaatctggccCctacacatcctacacattat	3	12	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48713085	A	A	48713085	1	1	164	0	1	0	0	0	0	0	0	0	5759	638	22	2		2	FBN1	15	48713085	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	3148527	48713085	53818307	674	136361											
CEP152	22995	broad.mit.edu	37	chr15	49030440	49030440	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcttcttaaatactgtaCcataattagtctagattaac	4	7	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49030440	A	A	49030440	1	1	164	0	1	0	0	0	0	0	0	0	3278	522	18	3		3	CEP152	15	49030440	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	317355	49030440	53500952	675	136362											
DPP8	54878	broad.mit.edu	37	chr15	65779977	65779977	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatgactacagaaagaatcTtatttggaaagaggaaatga	11	3	1	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65779977	A	A	65779977	1	1	164	0	1	0	0	0	0	0	0	0	4772	1624	56	5		5	DPP8	15	65779977	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	16749537	65779977	36751415	676	136363											
DIS3L	115752	broad.mit.edu	37	chr15	66610849	66610849	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggtgacatttccgtccaaaGaagaggtccaatctcagggc	11	10	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66610849	C	C	66610849	3	2	164	1	0	0	0	0	1	0	0	0	4576	943	33	4	1087	4	DIS3L	15	66610849	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	830872	66610849	35920543	677	136364											
LRRC49	54839	broad.mit.edu	37	chr15	71329524	71329524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctttctacaggaaaaaGcaatttcggtatctactaga	7	8	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71329524	T	T	71329524	3	4	164	1	0	0	0	0	1	0	0	0	9093	962	34	3	1768	3	LRRC49	15	71329524	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4718675	71329524	31201868	678	136365											
THSD4	79875	broad.mit.edu	37	chr15	71953117	71953117	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaccgtctgtccctgccaGatgatgtattccttcagaac	7	12	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71953117	T	T	71953117	1	4	164	0	1	0	0	0	0	0	0	0	16001	957	33	3		3	THSD4	15	71953117	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	623593	71953117	30578275	679	136366											
ACAN	176	broad.mit.edu	37	chr15	89382144	89382144	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggacaaggtctcactgccCaactacccggccatccccag	8	18	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89382144	T	T	89382144	2	4	164	1	0	0	0	0	0	0	0	1	117	581	21	4		4	ACAN	15	89382144	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	17429027	89382144	13149248	680	136367											
ANPEP	290	broad.mit.edu	37	chr15	90347444	90347444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgtctcctctcggagcCcctgtttccttctccgcact	8	19	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90347444	A	A	90347444	1	1	164	0	1	0	0	0	0	0	0	0	710	638	22	2		2	ANPEP	15	90347444	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	965300	90347444	12183948	681	136368											
TTC23	64927	broad.mit.edu	37	chr15	99678233	99678233	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcagtctgctgttgtgccGggccgggccttccccagcag	13	16	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99678233	A	A	99678233	2	1	164	1	0	0	0	0	0	0	0	1	16816	1103	39	4		4	TTC23	15	99678233	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	9330789	99678233	2853159	682	136369											
TTC23	64927	broad.mit.edu	37	chr15	99759098	99759098	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaaaagttagaggcaaaagGatacttttgaagggagagta	13	2	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99759098	A	A	99759098	1	1	164	0	1	0	0	0	0	0	0	0	16816	1189	41	4		4	TTC23	15	99759098	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	80865	99759098	2772294	683	136370											
BAIAP3	8938	broad.mit.edu	37	chr16	1391159	1391159	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgccctgaaagtctctgtCatgcgtgccaagaaccttct	8	12	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1391159	T	T	1391159	2	4	164	1	0	0	0	0	0	0	0	1	1309	813	29	4		4	BAIAP3	16	1391159	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08		1391159	88963594	684	136371											
A2BP1	54715	broad.mit.edu	37	chr16	7726787	7726787	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttttagggtggttatgcTgcataccgctacgcccagcc	12	11	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7726787	C	C	7726787	2	2	164	1	0	0	0	0	0	0	0	1	3	1567	55	5		5	A2BP1	16	7726787	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	6335628	7726787	82627966	685	136372											
USP7	7874	broad.mit.edu	37	chr16	8988572	8988572	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatctctggcaaaaaagccTaggccgctacgctaggcaag	10	12	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8988572	A	A	8988572	1	1	164	0	1	0	0	0	0	0	0	0	17215	1537	53	5		5	USP7	16	8988572	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	1261785	8988572	81366181	686	136373											
PARN	5073	broad.mit.edu	37	chr16	14700284	14700284	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaaaaaaagaaacccCtaacagtgtaacaatggatg	7	6	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14700284	T	T	14700284	1	4	164	0	1	0	0	0	0	0	0	0	11547	696	24	4		4	PARN	16	14700284	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	5711712	14700284	75654469	687	136374											
C16orf62	57020	broad.mit.edu	37	chr16	19656206	19656206	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgtacaattattgattttAgtgcactcactcttgaggat	7	6	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19656206	T	T	19656206	5	4	164	1	0	0	0	0	0	0	1	0	1839	434	15	5	1954	5	C16orf62	16	19656206	Splice_Site	SNP	A	TCGA-50-5941-01A-11D-1753-08	4955922	19656206	70698547	688	136375											
ACSM2A	123876	broad.mit.edu	37	chr16	20483115	20483115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctaatttttgctaaaccCctgccatgtggtgaacagtg	8	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20483115	A	A	20483115	1	1	164	0	1	0	0	0	0	0	0	0	183	638	22	2		2	ACSM2A	16	20483115	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	826909	20483115	69871638	689	136376											
POLR3E	55718	broad.mit.edu	37	chr16	22314227	22314227	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttggttgaacgactgatggtCccagtctctcgccctccttt	9	13	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22314227	T	T	22314227	1	4	164	0	1	0	0	0	0	0	0	0	12327	870	30	4		4	POLR3E	16	22314227	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1831112	22314227	68040526	690	136377											
RBBP6	5930	broad.mit.edu	37	chr16	24580932	24580932	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaaataaaacagactcatTgtttgttctcccaagtagag	7	7	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24580932	A	A	24580932	4	1	164	1	0	0	0	0	0	1	0	0	13211	1821	63	5	3041	5	RBBP6	16	24580932	Nonsense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	2266705	24580932	65773821	691	136378											
SLC5A11	115584	broad.mit.edu	37	chr16	24888359	24888359	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggaccaaaagcagaagcagGaagaccattgaggaggctgc	14	8	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24888359	C	C	24888359	1	2	164	0	1	0	0	0	0	0	0	0	14777	1189	41	4		4	SLC5A11	16	24888359	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	307427	24888359	65466394	692	136379											
FAM57B	83723	broad.mit.edu	37	chr16	30038006	30038006	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccttgtgcaggtagccaCgcgctatggcccacgtgctg	12	14	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30038006	T	T	30038006	3	4	164	1	0	0	0	0	1	0	0	0	5640	536	19	4	468	4	FAM57B	16	30038006	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5149647	30038006	60316747	693	136380											
ZNF768	79724	broad.mit.edu	37	chr16	30536017	30536017	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcgcacctgtagggccgctCgcccgtgtgggagcgctggt	18	13	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30536017	A	A	30536017	4	1	164	1	0	0	0	0	0	1	0	0	18270	893	31	3	182	3	ZNF768	16	30536017	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	498011	30536017	59818736	694	136381											
HSD3B7	80270	broad.mit.edu	37	chr16	30998216	30998216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcccacgggcatctacgGtgaaggccaccagatcatga	11	13	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30998216	T	T	30998216	3	4	164	1	0	0	0	0	1	0	0	0	7459	1261	44	3	605	3	HSD3B7	16	30998216	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	462199	30998216	59356537	695	136382											
ITGAM	3684	broad.mit.edu	37	chr16	31282234	31282234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaacccaaaacaccaaGtgtcaaattacttgattcat	3	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31282234	T	T	31282234	1	4	164	0	1	0	0	0	0	0	0	0	7957	1044	36	3		3	ITGAM	16	31282234	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	284018	31282234	59072519	696	136383											
N4BP1	9683	broad.mit.edu	37	chr16	48596397	48596397	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtcaatttacaaaagtTccttatagcacataataaat	4	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48596397	A	A	48596397	1	1	164	0	1	0	0	0	0	0	0	0	10203	1798	62	5		5	N4BP1	16	48596397	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	17314163	48596397	41758356	697	136384											
ADCY7	113	broad.mit.edu	37	chr16	50325833	50325833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgggctaaggcctctgGgggaggttttgtggtctggg	21	5	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50325833	T	T	50325833	1	4	164	0	1	0	0	0	0	0	0	0	299	1247	43	2		2	ADCY7	16	50325833	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1729436	50325833	40028920	698	136385											
NLRC5	84166	broad.mit.edu	37	chr16	57054740	57054740	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagttcttcctccccaacaCggacctggattccaggaacg	9	14	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57054740	T	T	57054740	3	4	164	1	0	0	0	0	1	0	0	0	10565	536	19	4	118	4	NLRC5	16	57054740	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	6728907	57054740	33300013	699	136386											
GPR114	221188	broad.mit.edu	37	chr16	57596965	57596965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcacccttaccccactcCgggctctggcctccctggcc	7	22	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57596965	A	A	57596965	1	1	164	0	1	0	0	0	0	0	0	0	6696	667	23	1		1	GPR114	16	57596965	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	542225	57596965	32757788	700	136387											
TK2	7084	broad.mit.edu	37	chr16	66551131	66551131	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggtaaactgaggttaaaaGaatacgtggctctcaggact	11	6	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66551131	T	T	66551131	1	4	164	0	1	0	0	0	0	0	0	0	16056	957	33	3		3	TK2	16	66551131	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	8954166	66551131	23803622	701	136388											
CMTM3	123920	broad.mit.edu	37	chr16	66643754	66643754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggagcagggagtcagcCctgtgatgcatcccatccac	11	15	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66643754	A	A	66643754	1	1	164	0	1	0	0	0	0	0	0	0	3616	638	22	2		2	CMTM3	16	66643754	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	92623	66643754	23710999	702	136389											
RFWD3	55159	broad.mit.edu	37	chr16	74662599	74662599	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaaactgtatctcacactCcaaaactcggacggctccag	8	13	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74662599	A	A	74662599	1	1	164	0	1	0	0	0	0	0	0	0	13369	870	30	3		3	RFWD3	16	74662599	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	8018845	74662599	15692154	703	136390											
CNTNAP4	85445	broad.mit.edu	37	chr16	76501225	76501225	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgattcattgtgatgcgtaCtggatttatttcgtttttat	8	5	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76501225	G	G	76501225	1	3	164	0	1	0	0	0	0	0	0	0	3681	580	20	4		4	CNTNAP4	16	76501225	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1838626	76501225	13853528	704	136391											
CLEC3A	10143	broad.mit.edu	37	chr16	78064459	78064459	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaatcctggttatcccCaggaactccgacgaaatcaa	10	11	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78064459	A	A	78064459	2	1	164	1	0	0	0	0	0	0	0	1	3542	581	21	2		2	CLEC3A	16	78064459	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	1563234	78064459	12290294	705	136392											
C16orf46	123775	broad.mit.edu	37	chr16	81095024	81095024	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctggggtctggagggcaCgccaggtttttctcagacag	15	9	2	1	rs76579573	byFrequency;by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81095024	A	A	81095024	2	1	164	1	0	0	0	0	0	0	0	1	1829	523	19	3		3	C16orf46	16	81095024	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	3030565	81095024	9259729	706	136393											
CDH13	1012	broad.mit.edu	37	chr16	83378559	83378559	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatcagaatgacaaccgaccGatctttcgggaaggccccta	10	12	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83378559	C	C	83378559	2	2	164	1	0	0	0	0	0	0	0	1	3129	1045	37	4		4	CDH13	16	83378559	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2283535	83378559	6976194	707	136394											
TAF1C	9013	broad.mit.edu	37	chr16	84212613	84212613	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacgggtgtgtgctgctgGgagcgagtggcccggacgct	20	9	0	0	rs138100695		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84212613	T	T	84212613	2	4	164	1	0	0	0	0	0	0	0	1	15640	1219	43	2		2	TAF1C	16	84212613	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	834054	84212613	6142140	708	136395											
USP10	9100	broad.mit.edu	37	chr16	84779061	84779061	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtgcatcacctcctgctgAcggcacgggctctgcatcag	12	14	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84779061	G	G	84779061	3	3	164	1	0	0	0	0	1	0	0	0	17167	275	10	5	988	5	USP10	16	84779061	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	566448	84779061	5575692	709	136396											
GLOD4	51031	broad.mit.edu	37	chr17	663352	663352	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatttattgggaactgacaCgtcaggcctcacaggtgctg	12	10	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	663352	G	G	663352	1	3	164	0	1	0	0	0	0	0	0	0	6514	551	19	4		4	GLOD4	17	663352	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08		663352	80531858	710	136397											
SCARF1	8578	broad.mit.edu	37	chr17	1543189	1543189	+	Intron	DEL	G	-	-													cctggcactctcccgcccccGggatccccatccttacctgg							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1543189	-	-	1543189	6	5	164	0	1	1	0	1	0	0	0	0	13995	1131	39	0		0	SCARF1	17	1543189	Intron	DEL	G	TCGA-50-5941-01A-11D-1753-08	879837	1543189	79652021	711	136398											
SPATA22	84690	broad.mit.edu	37	chr17	3343342	3343342	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaaatactttaattcaaCaagtgaaatacaatagtagc	4	6	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3343342	A	A	3343342	1	1	164	0	1	0	0	0	0	0	0	0	15124	493	17	3		3	SPATA22	17	3343342	3'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	1800153	3343342	77851868	712	136399											
USP6	9098	broad.mit.edu	37	chr17	5038423	5038423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagctcactgcttatctGgtgaatcatctgaacctgaa	9	9	4	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5038423	T	T	5038423	1	4	164	0	1	0	0	0	0	0	0	0	17213	1363	47	2		2	USP6	17	5038423	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1695081	5038423	76156787	713	136400											
WSCD1	23302	broad.mit.edu	37	chr17	6021461	6021461	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagaattcaacagaaaatGtgccgggcacctgggatatg	13	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6021461	C	C	6021461	3	2	164	1	0	0	0	0	1	0	0	0	17533	1377	48	4	1354	4	WSCD1	17	6021461	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	983038	6021461	75173749	714	136401											
TP53	7157	broad.mit.edu	37	chr17	7579471	7579471	+	Frame_Shift_Del	DEL	G	-	-													gctgctggtgcaggggccacGgggggagcagcctctggcat					rs56275308		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7579471	-	-	7579471	7	5	164	1	0	1	0	1	0	0	0	0	16505	1103	39	0	1086	0	TP53	17	7579471	Frame_Shift_Del	DEL	G	TCGA-50-5941-01A-11D-1753-08	1558010	7579471	73615739	715	136402											
MYH8	4626	broad.mit.edu	37	chr17	10316083	10316083	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacatgttgtttcatgaaGgatatcctcttttacctaat	7	7	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10316083	A	A	10316083	1	1	164	0	1	0	0	0	0	0	0	0	10135	1015	35	4		4	MYH8	17	10316083	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2736612	10316083	70879127	716	136403											
MYH8	4626	broad.mit.edu	37	chr17	10323440	10323440	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaagacagatgttttagcAtcaaacggcttgttttgggc	10	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10323440	C	C	10323440	3	2	164	1	0	0	0	0	1	0	0	0	10135	214	8	5	5860	5	MYH8	17	10323440	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	7357	10323440	70871770	717	136404											
MYH1	4619	broad.mit.edu	37	chr17	10403986	10403986	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgtgctgtgaggtcattGatcagccgctgctgctcctc	11	13	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10403986	T	T	10403986	2	4	164	1	0	0	0	0	0	0	0	1	10123	1280	45	3		3	MYH1	17	10403986	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	80546	10403986	70791224	718	136405											
RICH2	9912	broad.mit.edu	37	chr17	12883520	12883520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccccagccagccgcctGcagaccagagtcctcacacc	8	21	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12883520	T	T	12883520	3	4	164	1	0	0	0	0	1	0	0	0	13466	1319	46	3	1983	3	RICH2	17	12883520	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2479534	12883520	68311690	719	136406											
LLGL1	3996	broad.mit.edu	37	chr17	18138698	18138698	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtttcagttctaagcccGgaggtcagaatgtgccatac	11	9	3	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18138698	A	A	18138698	1	1	164	0	1	0	0	0	0	0	0	0	8907	1131	39	4		4	LLGL1	17	18138698	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5255178	18138698	63056512	720	136407											
NOS2	4843	broad.mit.edu	37	chr17	26110042	26110042	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgcttggtggcgaagatGagctcatctcccgtcagttg	13	11	3	2	rs139747007	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26110042	A	A	26110042	2	1	164	1	0	0	0	0	0	0	0	1	10638	1277	45	4		4	NOS2	17	26110042	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	7971344	26110042	55085168	721	136408											
NF1	4763	broad.mit.edu	37	chr17	29576239	29576239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtgtgtggttaactaTaatactgagtcagtttggat	12	3	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29576239	C	C	29576239	1	2	164	0	1	0	0	0	0	0	0	0	10451	1421	49	5		5	NF1	17	29576239	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	3466197	29576239	51618971	722	136409											
TMEM132E	124842	broad.mit.edu	37	chr17	32961968	32961968	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagggcactgaccaggtggtCaccatgttaggcccggactg	15	11	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32961968	T	T	32961968	2	4	164	1	0	0	0	0	0	0	0	1	16171	813	29	4		4	TMEM132E	17	32961968	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	3385729	32961968	48233242	723	136410											
TMEM132E	124842	broad.mit.edu	37	chr17	32961989	32961989	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accatgttaggcccggactgGctggtggaggtcaccgacct	14	12	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32961989	A	A	32961989	4	1	164	1	0	0	0	0	0	1	0	0	16171	1212	42	4	1620	4	TMEM132E	17	32961989	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	21	32961989	48233221	724	136411											
AP2B1	163	broad.mit.edu	37	chr17	33935316	33935316	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacagcagcagtctgcgtGgcaaaactccatgatatcaa	8	10	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33935316	T	T	33935316	2	4	164	1	0	0	0	0	0	0	0	1	743	1335	47	2		2	AP2B1	17	33935316	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	973327	33935316	47259894	725	136412											
DDX52	11056	broad.mit.edu	37	chr17	35984500	35984500	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgggaagaaaatatacctTgtagtttgtaagagttaatt	9	4	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35984500	A	A	35984500	1	1	164	0	1	0	0	0	0	0	0	0	4403	1827	63	5		5	DDX52	17	35984500	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	2049184	35984500	45210710	726	136413											
KLHL10	317719	broad.mit.edu	37	chr17	39994098	39994098	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaaagatgtagtagggaAaaggagcgacagctggctaa	13	5	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39994098	C	C	39994098	1	2	164	0	1	0	0	0	0	0	0	0	8437	29	1	5		5	KLHL10	17	39994098	5'UTR	SNP	A	TCGA-50-5941-01A-11D-1753-08	4009598	39994098	41201112	727	136414											
KLHL10	317719	broad.mit.edu	37	chr17	39994152	39994152	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaccctccccgacaccctagGaaagcagcctctctccgctg	7	19	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39994152	C	C	39994152	1	2	164	0	1	0	0	0	0	0	0	0	8437	1189	41	4		4	KLHL10	17	39994152	5'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	54	39994152	41201058	728	136415											
ADAM11	4185	broad.mit.edu	37	chr17	42853507	42853507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctagtacgaaccacggGgtgtgtcctgccgagaggcc	13	13	0	1	rs138490145		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42853507	T	T	42853507	3	4	164	1	0	0	0	0	1	0	0	0	235	1232	43	2	1568	2	ADAM11	17	42853507	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2859355	42853507	38341703	729	136416											
DCAKD	79877	broad.mit.edu	37	chr17	43107426	43107426	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcccagatacccccatggtCctcccttccagccagggcat	7	18	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43107426	A	A	43107426	1	1	164	0	1	0	0	0	0	0	0	0	4312	870	30	3		3	DCAKD	17	43107426	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	253919	43107426	38087784	730	136417											
ITGA3	3675	broad.mit.edu	37	chr17	48152893	48152893	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actacaggcgaaacatcagtGagtgctggggtgcagcgtaa	14	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48152893	A	A	48152893	1	1	164	0	1	0	0	0	0	0	0	0	7947	1305	45	4		4	ITGA3	17	48152893	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5045467	48152893	33042317	731	136418											
SPAG9	9043	broad.mit.edu	37	chr17	49156969	49156969	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcagcatagtttttcgcttTcagctcaagttgtcttgttt	8	8	4	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49156969	A	A	49156969	4	1	164	1	0	0	0	0	0	1	0	0	15101	1792	62	5	3681	5	SPAG9	17	49156969	Nonsense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	1004076	49156969	32038241	732	136419											
ANKFN1	162282	broad.mit.edu	37	chr17	54431318	54431318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacacacctaacagcgaggGcttgacacccctggatattg	9	13	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54431318	T	T	54431318	3	4	164	1	0	0	0	0	1	0	0	0	625	1203	42	3	539	3	ANKFN1	17	54431318	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5274349	54431318	26763892	733	136420											
COIL	8161	broad.mit.edu	37	chr17	55027026	55027026	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccttttttgctgtgactgTtcttttgaaatataccttaa	5	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55027026	C	C	55027026	1	2	164	0	1	0	0	0	0	0	0	0	3697	1740	60	5		5	COIL	17	55027026	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	595708	55027026	26168184	734	136421											
COIL	8161	broad.mit.edu	37	chr17	55038196	55038196	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggggcaagagcccccccTccaggtagaggcctaggaag	16	13	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55038196	C	C	55038196	3	2	164	1	0	0	0	0	1	0	0	0	3697	1551	54	5	1573	5	COIL	17	55038196	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	11170	55038196	26157014	735	136422											
MRC2	9902	broad.mit.edu	37	chr17	60741785	60741785	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgagtaccgagtgatttaAcgtatgagtgacggctcacc	12	8	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60741785	T	T	60741785	1	4	164	0	1	0	0	0	0	0	0	0	9852	58	2	5		5	MRC2	17	60741785	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	5703589	60741785	20453425	736	136423											
GH2	2689	broad.mit.edu	37	chr17	61958593	61958593	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacctcactcagcgtatgctCatctgcctgcattttcactt	5	14	5	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61958593	T	T	61958593	1	4	164	0	1	0	0	0	0	0	0	0	6432	841	29	4		4	GH2	17	61958593	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1216808	61958593	19236617	737	136424											
GH1	2688	broad.mit.edu	37	chr17	61994708	61994708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccacagagcggcactgcacGatgcgcaggaatgtctcgac	12	13	1	1	rs148474991		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61994708	C	C	61994708	3	2	164	1	0	0	0	0	1	0	0	0	6431	1048	37	4	42	4	GH1	17	61994708	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	36115	61994708	19200502	738	136425											
CD79B	974	broad.mit.edu	37	chr17	62006911	62006911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggccaggctggggagGgccagggagaggggtgaggg	25	6	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62006911	T	T	62006911	1	4	164	0	1	0	0	0	0	0	0	0	3067	1247	43	2		2	CD79B	17	62006911	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	12203	62006911	19188299	739	136426											
DDX5	1655	broad.mit.edu	37	chr17	62499955	62499958	+	Frame_Shift_Del	DEL	TGAT	-	-													ctctctctaggaatggctgaTgattgatgtggacaatggca							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62499958	-	-	62499955	7	5	164	1	0	1	0	1	0	0	0	0	4400	1464	51	0	1407	0	DDX5	17	62499955	Frame_Shift_Del	DEL	TGAT	TCGA-50-5941-01A-11D-1753-08	493044	62499955	18695255	740	136427											
CACNG5	27091	broad.mit.edu	37	chr17	64876837	64876837	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttgtgttgttttcttttCttgcaccctggaattttttg	8	6	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64876837	T	T	64876837	1	4	164	0	1	0	0	0	0	0	0	0	2586	928	32	4		4	CACNG5	17	64876837	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2376882	64876837	16318373	741	136428											
SDK2	54549	broad.mit.edu	37	chr17	71346482	71346482	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccaagctcatcatctcgcTgtggcctagggctccagact	9	14	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71346482	A	A	71346482	3	1	164	1	0	0	0	0	1	0	0	0	14082	1580	55	5	598	5	SDK2	17	71346482	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	6469645	71346482	9848728	742	136429											
SDK2	54549	broad.mit.edu	37	chr17	71346525	71346525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcactgttccctgaagtcggCgggagattgacaccctttag	12	11	0	3	rs149660021	by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71346525	T	T	71346525	1	4	164	0	1	0	0	0	0	0	0	0	14082	783	27	4		4	SDK2	17	71346525	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	43	71346525	9848685	743	136430											
DNAI2	64446	broad.mit.edu	37	chr17	72301559	72301559	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggtctgaagacagccggGaatcgtccatcatgtggacc	12	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72301559	T	T	72301559	4	4	164	1	0	0	0	0	0	1	0	0	4650	1175	41	3	1219	3	DNAI2	17	72301559	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	955034	72301559	8893651	744	136431											
DNAI2	64446	broad.mit.edu	37	chr17	72308104	72308104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcgcttgccatcctgccCtctccccaccgggctctctc	8	20	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72308104	A	A	72308104	1	1	164	0	1	0	0	0	0	0	0	0	4650	696	24	2		2	DNAI2	17	72308104	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	6545	72308104	8887106	745	136432											
UNK	85451	broad.mit.edu	37	chr17	73780779	73780779	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggtcctgtgctttgccAgcaaccctctgccgacggta	11	13	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73780779	G	G	73780779	1	3	164	0	1	0	0	0	0	0	0	0	17126	203	7	5		5	UNK	17	73780779	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	1472675	73780779	7414431	746	136433											
TBC1D16	125058	broad.mit.edu	37	chr17	77926534	77926534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctccagggcgcacaccCgctgcggctcgtcccagcgt	12	18	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77926534	A	A	77926534	3	1	164	1	0	0	0	0	1	0	0	0	15724	652	23	1	1476	1	TBC1D16	17	77926534	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4145755	77926534	3268676	747	136434											
FASN	2194	broad.mit.edu	37	chr17	80045689	80045689	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttgggggtggggctttccGggtggtcgaagagcctgggg	23	6	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80045689	A	A	80045689	3	1	164	1	0	0	0	0	1	0	0	0	5740	1116	39	4	4720	4	FASN	17	80045689	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2119155	80045689	1149521	748	136435											
SMCHD1	23347	broad.mit.edu	37	chr18	2762207	2762207	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttgccagtaggaccttGgtcagagatctacatcttag	10	9	4	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2762207	T	T	2762207	3	4	164	1	0	0	0	0	1	0	0	0	14902	1339	47	2	4681	2	SMCHD1	18	2762207	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08		2762207	75315041	749	136436											
EPB41L3	23136	broad.mit.edu	37	chr18	5415909	5415909	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggcacagagccagagGgaaggagagagtgagagcgt	19	6	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5415909	A	A	5415909	3	1	164	1	0	0	0	0	1	0	0	0	5196	1232	43	4	1328	4	EPB41L3	18	5415909	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2653702	5415909	72661339	750	136437											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851954	14851954	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggaataatgaatgttgaTgtgagtaatacaatatataa	8	2	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14851954	G	G	14851954	3	3	164	1	0	0	0	0	1	0	0	0	659	1461	51	5	3796	5	ANKRD30B	18	14851954	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	9436045	14851954	63225294	751	136438											
ZNF521	25925	broad.mit.edu	37	chr18	22805060	22805060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttcccggaggccattttcgGagaagaaggttcgagagcac	14	9	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22805060	T	T	22805060	3	4	164	1	0	0	0	0	1	0	0	0	18092	1174	41	3	1133	3	ZNF521	18	22805060	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	7953106	22805060	55272188	752	136439											
CDH2	1000	broad.mit.edu	37	chr18	25565006	25565006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatggcaatgatggcacCggtgccaagccccgcaccca	12	15	0	1	rs151110746		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25565006	A	A	25565006	3	1	164	1	0	0	0	0	1	0	0	0	3135	652	23	1	569	1	CDH2	18	25565006	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2759946	25565006	52512242	753	136440											
KIAA1012	22878	broad.mit.edu	37	chr18	29437775	29437775	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacaattctcagaagctgaGggacttagtggtgttagaac	11	7	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29437775	C	C	29437775	2	2	164	1	0	0	0	0	0	0	0	1	8274	987	35	4		4	KIAA1012	18	29437775	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	3872769	29437775	48639473	754	136441											
MOCOS	55034	broad.mit.edu	37	chr18	33848580	33848580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggatctcaggtgctccctGtgttgaaagagaatgtggaa	13	6	1	2	rs79823152	byFrequency;by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33848580	T	T	33848580	3	4	164	1	0	0	0	0	1	0	0	0	9783	1377	48	3	2657	3	MOCOS	18	33848580	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4410805	33848580	44228668	755	136442											
KIAA1632	57724	broad.mit.edu	37	chr18	43493633	43493633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcatcaaagtgtaagcCaccttctaccactcaaatgc	5	13	4	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43493633	A	A	43493633	1	1	164	0	1	0	0	0	0	0	0	0	8319	609	21	2		2	KIAA1632	18	43493633	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	9645053	43493633	34583615	756	136443											
MBD1	4152	broad.mit.edu	37	chr18	47796406	47796406	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaatcaaataaatttcaTatagatcattgtcaaaatta	3	5	5	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47796406	C	C	47796406	1	2	164	0	1	0	0	0	0	0	0	0	9434	1421	49	5		5	MBD1	18	47796406	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	4302773	47796406	30280842	757	136444											
MBD2	8932	broad.mit.edu	37	chr18	51715144	51715144	+	Intron	DEL	A	-	-													cataaaataattttctttccAaatatactccattttaacca							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51715144	-	-	51715144	6	5	164	0	1	1	0	1	0	0	0	0	9435	145	5	0		0	MBD2	18	51715144	Intron	DEL	A	TCGA-50-5941-01A-11D-1753-08	3918738	51715144	26362104	758	136445	584	2									
MBD2	8932	broad.mit.edu	37	chr18	51715152	51715152	+	Intron	SNP	T	G	G													aattttctttccaaatatacTccattttaaccagaatttat							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51715152	G	G	51715152	1	3	164	0	1	0	0	0	0	0	0	0	9435	1566	54	5		5	MBD2	18	51715152	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	8	51715152	26362096	759	136446	584	2									
ZNF532	55205	broad.mit.edu	37	chr18	56620993	56620993	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgcctgttcatgcagagaGatgtgtacatatcccacgtg	10	10	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56620993	C	C	56620993	3	2	164	1	0	0	0	0	1	0	0	0	18099	942	33	4	3130	4	ZNF532	18	56620993	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4905841	56620993	21456255	760	136447											
SERPINB4	6318	broad.mit.edu	37	chr18	61310635	61310635	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacaggacaacgtaatgatGctgatagctaccttgctaat	8	9	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61310635	A	A	61310635	1	1	164	0	1	0	0	0	0	0	0	0	14216	1334	46	4		4	SERPINB4	18	61310635	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4689642	61310635	16766613	761	136448											
CDH7	1005	broad.mit.edu	37	chr18	63529984	63529984	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctgccaattttcattgtGgacagtggatctccctcact	7	11	4	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63529984	T	T	63529984	2	4	164	1	0	0	0	0	0	0	0	1	3145	1335	47	2		2	CDH7	18	63529984	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2219349	63529984	14547264	762	136449											
CDH7	1005	broad.mit.edu	37	chr18	63547583	63547583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctaattttaccatgacGtggggcaatgggtgagttta	13	6	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63547583	T	T	63547583	1	4	164	0	1	0	0	0	0	0	0	0	3145	1160	40	3		3	CDH7	18	63547583	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	17599	63547583	14529665	763	136450											
TMX3	54495	broad.mit.edu	37	chr18	66350137	66350137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattaatagatttgacagCaaaatcattcagcactttac	4	7	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66350137	A	A	66350137	1	1	164	0	1	0	0	0	0	0	0	0	16391	725	25	3		3	TMX3	18	66350137	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2802554	66350137	11727111	764	136451											
DAZAP1	26528	broad.mit.edu	37	chr19	1430351	1430351	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagggctacggtgccccGccacagttcagtaagtctag	11	14	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1430351	T	T	1430351	2	4	164	1	0	0	0	0	0	0	0	1	4277	1074	38	3		3	DAZAP1	19	1430351	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08		1430351	57698632	765	136452											
ATP8B3	148229	broad.mit.edu	37	chr19	1811740	1811740	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggccagtgcccattcacCgcatgaggaaaagggaggtt	15	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1811740	A	A	1811740	1	1	164	0	1	0	0	0	0	0	0	0	1200	667	23	1		1	ATP8B3	19	1811740	5'UTR	SNP	C	TCGA-50-5941-01A-11D-1753-08	381389	1811740	57317243	766	136453											
PIP5K1C	23396	broad.mit.edu	37	chr19	3641685	3641685	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgggcgccccgacctccCgccgaggccgtgctcaccct	13	19	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3641685	A	A	3641685	1	1	164	0	1	0	0	0	0	0	0	0	12036	667	23	1		1	PIP5K1C	19	3641685	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1829945	3641685	55487298	767	136454											
PIP5K1C	23396	broad.mit.edu	37	chr19	3645875	3645875	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagtttactgccctgccCagggggctctcggcctcccg	12	16	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3645875	A	A	3645875	1	1	164	0	1	0	0	0	0	0	0	0	12036	609	21	2		2	PIP5K1C	19	3645875	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4190	3645875	55483108	768	136455											
FBN3	84467	broad.mit.edu	37	chr19	8165957	8165957	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctggagcccagccctcacCtggccaccttgaactttttt	7	17	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8165957	G	G	8165957	1	3	164	0	1	0	0	0	0	0	0	0	5761	696	24	4		4	FBN3	19	8165957	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	4520082	8165957	50963026	769	136456											
NDUFA7	4701	broad.mit.edu	37	chr19	8381358	8381358	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggggcatgggggctgtggtGagcagcgctggagatcctca	20	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8381358	A	A	8381358	1	1	164	0	1	0	0	0	0	0	0	0	10365	1305	45	4		4	NDUFA7	19	8381358	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	215401	8381358	50747625	770	136457											
MUC16	94025	broad.mit.edu	37	chr19	9000432	9000433	+	Intron	DNP	GG	TT	TT													ggggtagaatgaggtatgtgGggctcttaccagaccctgaa							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	9000433	TT	TT	9000432	1	4	164	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	9000432	Intron	DNP	GG	TCGA-50-5941-01A-11D-1753-08	619074	9000432	50128551	771	136458											
ZNF560	147741	broad.mit.edu	37	chr19	9577253	9577253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccacagggcttctctctaGtgtgttttcaaatgtgcaat	8	9	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9577253	T	T	9577253	3	4	164	1	0	0	0	0	1	0	0	0	18118	1020	36	3	6	3	ZNF560	19	9577253	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	576821	9577253	49551730	772	136459											
COL5A3	50509	broad.mit.edu	37	chr19	10084181	10084181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccagaggtcaaagtggccCaagatgcccaggggtcaggg	16	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10084181	A	A	10084181	1	1	164	0	1	0	0	0	0	0	0	0	3730	609	21	2		2	COL5A3	19	10084181	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	506928	10084181	49044802	773	136460											
COL5A3	50509	broad.mit.edu	37	chr19	10096468	10096468	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggacccccagatgttagtCtctgaatcctgcccatatcc	7	15	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10096468	G	G	10096468	1	3	164	0	1	0	0	0	0	0	0	0	3730	928	32	4		4	COL5A3	19	10096468	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	12287	10096468	49032515	774	136461											
SMARCA4	6597	broad.mit.edu	37	chr19	11105387	11105387	+	Intron	DEL	T	-	-													cctcgtgatctgccctcctcTgcctcccaaagcgctgggat					rs113802009		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11105387	-	-	11105387	6	5	164	0	1	1	0	1	0	0	0	0	14884	1595	55	0		0	SMARCA4	19	11105387	Intron	DEL	T	TCGA-50-5941-01A-11D-1753-08	1008919	11105387	48023596	775	136462											
CC2D1A	54862	broad.mit.edu	37	chr19	14040397	14040397	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccccagaagtggcccaGcagtaccaggacatcatgca	11	14	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14040397	C	C	14040397	3	2	164	1	0	0	0	0	1	0	0	0	2752	962	34	4	2736	4	CC2D1A	19	14040397	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	2935010	14040397	45088586	776	136463											
EMR2	30817	broad.mit.edu	37	chr19	14883382	14883382	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagagacccccgtcctgaCtccccaacatggggcctgct	11	17	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14883382	G	G	14883382	1	3	164	0	1	0	0	0	0	0	0	0	5147	580	20	4		4	EMR2	19	14883382	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	842985	14883382	44245601	777	136464											
OR7C2	26658	broad.mit.edu	37	chr19	15052637	15052637	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttggatgcctggacaatTtgctcctgaccatgacggcc	10	12	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15052637	A	A	15052637	3	1	164	1	0	0	0	0	1	0	0	0	11312	1838	64	5	339	5	OR7C2	19	15052637	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	169255	15052637	44076346	778	136465											
CYP4F12	66002	broad.mit.edu	37	chr19	15791131	15791131	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacctgcaggtgaaagggGttggggacaaccttgcgggg	18	7	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15791131	T	T	15791131	1	4	164	0	1	0	0	0	0	0	0	0	4220	1276	44	3		3	CYP4F12	19	15791131	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	738494	15791131	43337852	779	136466											
OR10H2	26538	broad.mit.edu	37	chr19	15838973	15838973	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacctgttcacgctgctGggcaacctgctcatcatggc	10	13	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15838973	T	T	15838973	2	4	164	1	0	0	0	0	0	0	0	1	11000	1335	47	2		2	OR10H2	19	15838973	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	47842	15838973	43290010	780	136467											
OR10H2	26538	broad.mit.edu	37	chr19	15839525	15839525	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctatgccttcatcgtggcCgacatcttgaagatcccttc	7	14	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15839525	T	T	15839525	2	4	164	1	0	0	0	0	0	0	0	1	11000	639	23	4		4	OR10H2	19	15839525	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	552	15839525	43289458	781	136468											
IL12RB1	3594	broad.mit.edu	37	chr19	18188419	18188419	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactccatacgcagctgcccGgccaacttggacaccttgat	8	16	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18188419	T	T	18188419	2	4	164	1	0	0	0	0	0	0	0	1	7696	1103	39	1		1	IL12RB1	19	18188419	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2348894	18188419	40940564	782	136469											
ZNF208	7757	broad.mit.edu	37	chr19	22155045	22155045	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcttatgtttactaaagaCtgacaaccagctgaaggctt	7	8	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22155045	G	G	22155045	3	3	164	1	0	0	0	0	1	0	0	0	17892	565	20	4	1055	4	ZNF208	19	22155045	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3966626	22155045	36973938	783	136470											
ZNF257	113835	broad.mit.edu	37	chr19	22271585	22271585	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactggagagaaacccttcCaatgtgaagagtgtggcaaa	11	7	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22271585	T	T	22271585	4	4	164	1	0	0	0	0	0	1	0	0	17926	595	21	4	1047	4	ZNF257	19	22271585	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	116540	22271585	36857398	784	136471											
UQCRFS1	7386	broad.mit.edu	37	chr19	29698810	29698810	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttgccttctggaatatcgGataacttgatttcgattttc	7	8	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29698810	C	C	29698810	3	2	164	1	0	0	0	0	1	0	0	0	17147	1174	41	4	358	4	UQCRFS1	19	29698810	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	7427225	29698810	29430173	785	136472											
ZNF536	9745	broad.mit.edu	37	chr19	30935025	30935025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacaagctgggcaacctgGgcaaggggcgtgggcgtgtg	18	11	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935025	T	T	30935025	3	4	164	1	0	0	0	0	1	0	0	0	18101	1232	43	2	558	2	ZNF536	19	30935025	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1236215	30935025	28193958	786	136473											
TSHZ3	57616	broad.mit.edu	37	chr19	31769436	31769436	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctccacaatgggcttcccCtttttcatagcagagttggt	9	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31769436	G	G	31769436	3	3	164	1	0	0	0	0	1	0	0	0	16750	680	24	4	1986	4	TSHZ3	19	31769436	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	834411	31769436	27359547	787	136474											
ZNF585B	92285	broad.mit.edu	37	chr19	37678134	37678135	+	Missense_Mutation	DNP	CA	GT	GT													ttctatgttgattatggtccCataatttctctcctgttgga							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	37678135	GT	GT	37678134	3	3	164	1	0	0	0	0	1	0	0	0	18145	595	21	4	2008	4	ZNF585B	19	37678134	Missense_Mutation	DNP	CA	TCGA-50-5941-01A-11D-1753-08	5908698	37678134	21450849	788	136475											
HKR1	284459	broad.mit.edu	37	chr19	37854259	37854259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccagaggacacactcagGggagaagccatttgtatgtg	13	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37854259	T	T	37854259	3	4	164	1	0	0	0	0	1	0	0	0	7261	1232	43	2	1576	2	HKR1	19	37854259	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	176125	37854259	21274724	789	136476											
RYR1	6261	broad.mit.edu	37	chr19	38942578	38942578	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgctgtcccatgctccGggcatccatacacttggcct	9	16	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38942578	A	A	38942578	1	1	164	0	1	0	0	0	0	0	0	0	13879	1131	39	4		4	RYR1	19	38942578	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1088319	38942578	20186405	790	136477											
RYR1	6261	broad.mit.edu	37	chr19	39008033	39008033	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtgtggaggagatgtgTcccgacatcccggtgctgga	15	9	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39008033	C	C	39008033	2	2	164	1	0	0	0	0	0	0	0	1	13879	1673	58	5		5	RYR1	19	39008033	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	65455	39008033	20120950	791	136478											
PSG8	440533	broad.mit.edu	37	chr19	43268239	43268239	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcccatatataattatttGaccgtctactacatatgatg	6	8	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43268239	T	T	43268239	3	4	164	1	0	0	0	0	1	0	0	0	12767	1299	45	3	1058	3	PSG8	19	43268239	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4260206	43268239	15860744	792	136479											
PSG1	5669	broad.mit.edu	37	chr19	43348630	43348630	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggataaagagcttttgttctGattgctgaaacttcccatta	8	7	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43348630	C	C	43348630	1	2	164	0	1	0	0	0	0	0	0	0	12759	1305	45	4		4	PSG1	19	43348630	3'UTR	SNP	G	TCGA-50-5941-01A-11D-1753-08	80391	43348630	15780353	793	136480											
PSG6	5675	broad.mit.edu	37	chr19	43411020	43411020	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgactcttctctgaaaGccagatagactccacctaaa	5	13	2	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43411020	A	A	43411020	1	1	164	0	1	0	0	0	0	0	0	0	12765	986	34	4		4	PSG6	19	43411020	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	62390	43411020	15717963	794	136481											
PSG5	5673	broad.mit.edu	37	chr19	43688814	43688814	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcactaaatgcccaaaccGcagcatgggacataatgcag	9	12	0	0	rs111533954		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43688814	A	A	43688814	1	1	164	0	1	0	0	0	0	0	0	0	12764	1102	38	4		4	PSG5	19	43688814	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	277794	43688814	15440169	795	136482											
GPR4	2828	broad.mit.edu	37	chr19	46094546	46094546	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcagcatgagcgcccaCgggaagaggaagcccacgaa	14	12	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46094546	A	A	46094546	2	1	164	1	0	0	0	0	0	0	0	1	6759	523	19	3		3	GPR4	19	46094546	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	2405732	46094546	13034437	796	136483											
NPAS1	4861	broad.mit.edu	37	chr19	47535635	47535635	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggccccttccctgcctgCcgctccttgctaccacctag	8	19	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47535635	T	T	47535635	1	4	164	0	1	0	0	0	0	0	0	0	10657	754	26	4		4	NPAS1	19	47535635	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1441089	47535635	11593348	797	136484											
SPACA4	171169	broad.mit.edu	37	chr19	49110448	49110448	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgcgagccaccagctgCggccttgaggaacccgtcag	13	15	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49110448	A	A	49110448	4	1	164	1	0	0	0	0	0	1	0	0	15088	776	27	3	215	3	SPACA4	19	49110448	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1574813	49110448	10018535	798	136485											
RASIP1	54922	broad.mit.edu	37	chr19	49225186	49225186	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggccagggcccagctgatAgtggctgagcagatggtgca	17	10	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49225186	C	C	49225186	3	2	164	1	0	0	0	0	1	0	0	0	13186	420	15	5	282	5	RASIP1	19	49225186	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	114738	49225186	9903797	799	136486											
NAPSA	9476	broad.mit.edu	37	chr19	50865189	50865189	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccgcctcctcccttcaCccccattcagccttattctc	3	22	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50865189	A	A	50865189	1	1	164	0	1	0	0	0	0	0	0	0	10260	522	18	3		3	NAPSA	19	50865189	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1640003	50865189	8263794	800	136487											
KLK2	3817	broad.mit.edu	37	chr19	51380292	51380292	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccctactcccaacatctgGaggggaaaggtgagtgaaga	12	9	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51380292	T	T	51380292	1	4	164	0	1	0	0	0	0	0	0	0	8475	1175	41	3		3	KLK2	19	51380292	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	515103	51380292	7748691	801	136488											
KLK8	11202	broad.mit.edu	37	chr19	51499377	51499377	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcagatgttggtatagaCgccaggtttgtcggacctcc	14	10	0	2	rs56296296	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51499377	T	T	51499377	3	4	164	1	0	0	0	0	1	0	0	0	8481	536	19	4	65	4	KLK8	19	51499377	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	119085	51499377	7629606	802	136489											
ZNF665	79788	broad.mit.edu	37	chr19	53667774	53667774	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaccttgccacattggtTacatttgtaaggtttgtctc	8	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53667774	A	A	53667774	3	1	164	1	0	0	0	0	1	0	0	0	18200	1754	61	5	71	5	ZNF665	19	53667774	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	2168397	53667774	5461209	803	136490											
LENG8	114823	broad.mit.edu	37	chr19	54966526	54966526	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgtctccagctgagcccctCatctgtcctcccgcagcggg	10	18	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54966526	T	T	54966526	1	4	164	0	1	0	0	0	0	0	0	0	8796	841	29	4		4	LENG8	19	54966526	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1298752	54966526	4162457	804	136491											
LAIR2	3904	broad.mit.edu	37	chr19	55018975	55018975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgtgggaatgttctaagGttgggctgtggtcgtggctg	19	5	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55018975	T	T	55018975	1	4	164	0	1	0	0	0	0	0	0	0	8675	1276	44	3		3	LAIR2	19	55018975	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	52449	55018975	4110008	805	136492											
LAIR2	3904	broad.mit.edu	37	chr19	55021835	55021835	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggggagaaataattagaaTgagcaatagaaatgcacaga	11	3	0	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55021835	G	G	55021835	1	3	164	0	1	0	0	0	0	0	0	0	8675	1479	51	5		5	LAIR2	19	55021835	3'UTR	SNP	T	TCGA-50-5941-01A-11D-1753-08	2860	55021835	4107148	806	136493											
PTPRH	5794	broad.mit.edu	37	chr19	55718417	55718417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccaagtccagaaacaacGgcgctcataaacccctacca	6	17	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55718417	A	A	55718417	1	1	164	0	1	0	0	0	0	0	0	0	12911	1131	39	4		4	PTPRH	19	55718417	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	696582	55718417	3410566	807	136494											
ZNF805	390980	broad.mit.edu	37	chr19	57755474	57755474	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacctccttcgttccaccctCtgactccaggcctgatgggt	8	17	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57755474	T	T	57755474	1	4	164	0	1	0	0	0	0	0	0	0	18301	928	32	4		4	ZNF805	19	57755474	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2037057	57755474	1373509	808	136495											
ZSCAN1	284312	broad.mit.edu	37	chr19	58551710	58551710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactcttgcctgcgcctcaGgggtgctgcagggatgttcg	14	13	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58551710	A	A	58551710	1	1	164	0	1	0	0	0	0	0	0	0	18355	1015	35	4		4	ZSCAN1	19	58551710	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	796236	58551710	577273	809	136496											
ZSCAN1	284312	broad.mit.edu	37	chr19	58563761	58563761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgccctgggacagagcCtttggggatgacgcccgttc	14	13	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58563761	A	A	58563761	1	1	164	0	1	0	0	0	0	0	0	0	18355	696	24	2		2	ZSCAN1	19	58563761	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	12051	58563761	565222	810	136497											
C20orf54	113278	broad.mit.edu	37	chr20	744476	744476	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccacggaagcctcccagcAcctgggttgacgctggagga	13	13	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	744476	T	T	744476	3	4	164	1	0	0	0	0	1	0	0	0	2136	159	6	5	682	5	C20orf54	20	744476	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08		744476	62281044	811	136498											
SIRPA	140885	broad.mit.edu	37	chr20	1908406	1908406	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctgtggttccaaggatgtGattacagcatttcctctcca	8	11	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1908406	A	A	1908406	1	1	164	0	1	0	0	0	0	0	0	0	14445	1305	45	4		4	SIRPA	20	1908406	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1163930	1908406	61117114	812	136499											
TGM3	7053	broad.mit.edu	37	chr20	2320491	2320491	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgactcggcagcccctctCccccataggtgctgaacgag	10	17	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2320491	T	T	2320491	1	4	164	0	1	0	0	0	0	0	0	0	15954	870	30	4		4	TGM3	20	2320491	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	412085	2320491	60705029	813	136500											
TGM6	343641	broad.mit.edu	37	chr20	2384386	2384386	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgtatactcaaacacgaAgaagattgggagatgcatca	11	7	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2384386	G	G	2384386	3	3	164	1	0	0	0	0	1	0	0	0	15957	72	3	5	1287	5	TGM6	20	2384386	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	63895	2384386	60641134	814	136501											
C20orf103	24141	broad.mit.edu	37	chr20	9496977	9496977	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgtctacgactcctcGgagaaaacccacttcaaaga	7	12	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9496977	C	C	9496977	2	2	164	1	0	0	0	0	0	0	0	1	2097	1103	39	4		4	C20orf103	20	9496977	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	7112591	9496977	53528543	815	136502											
ANKRD5	63926	broad.mit.edu	37	chr20	10026385	10026385	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgcttcaagtacttatgAtttacccatgtcatagataa	6	7	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10026385	G	G	10026385	1	3	164	0	1	0	0	0	0	0	0	0	676	348	12	5		5	ANKRD5	20	10026385	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	529408	10026385	52999135	816	136503											
BTBD3	22903	broad.mit.edu	37	chr20	11898955	11898955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggaaaagaacatgaaatGtctcaccttcttcttgatgc	7	9	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11898955	T	T	11898955	3	4	164	1	0	0	0	0	1	0	0	0	1554	1377	48	3	34	3	BTBD3	20	11898955	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1872570	11898955	51126565	817	136504											
MACROD2	140733	broad.mit.edu	37	chr20	14474231	14474231	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatatttagtaagttctgtGacacttaaaagaaaattaat	6	3	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14474231	C	C	14474231	1	2	164	0	1	0	0	0	0	0	0	0	9234	1305	45	4		4	MACROD2	20	14474231	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	2575276	14474231	48551289	818	136505											
XRN2	22803	broad.mit.edu	37	chr20	21328900	21328900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtacgaaaccggtaagcttAattacttaaagtcataaagt	8	6	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21328900	T	T	21328900	1	4	164	0	1	0	0	0	0	0	0	0	17587	377	13	5		5	XRN2	20	21328900	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	6854669	21328900	41696620	819	136506											
TMEM90B	79953	broad.mit.edu	37	chr20	24565510	24565510	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcgactactcaagcgacAcagagagtgaggacaatttc	11	9	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24565510	G	G	24565510	3	3	164	1	0	0	0	0	1	0	0	0	16342	159	6	5	505	5	TMEM90B	20	24565510	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	3236610	24565510	38460010	820	136507											
HM13	81502	broad.mit.edu	37	chr20	30149586	30149586	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaatgcctcactgcaaataGagggacttacagagggattt	12	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30149586	T	T	30149586	1	4	164	0	1	0	0	0	0	0	0	0	7284	957	33	3		3	HM13	20	30149586	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	5584076	30149586	32875934	821	136508											
HCK	3055	broad.mit.edu	37	chr20	30662469	30662469	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatccctggccacccggaagGagggctacatcccaagcaac	11	15	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30662469	T	T	30662469	4	4	164	1	0	0	0	0	0	1	0	0	7060	1175	41	3	397	3	HCK	20	30662469	Nonsense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	512883	30662469	32363051	822	136509											
KIF3B	9371	broad.mit.edu	37	chr20	30918117	30918117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaaataagaaatccaaGgccaggtgagtggctttgat	11	7	0	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30918117	T	T	30918117	3	4	164	1	0	0	0	0	1	0	0	0	8371	991	35	2	2168	2	KIF3B	20	30918117	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	255648	30918117	32107403	823	136510											
BPIL3	128859	broad.mit.edu	37	chr20	31622623	31622623	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacatcacagccaccaaCcggcttctgcgggatgagga	11	13	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31622623	G	G	31622623	3	3	164	1	0	0	0	0	1	0	0	0	1502	506	18	4	371	4	BPIL3	20	31622623	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	704506	31622623	31402897	824	136511											
GDF5	8200	broad.mit.edu	37	chr20	34022074	34022074	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtggccagtggggcccgcCgttttcgccgctggctgaac	16	13	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34022074	T	T	34022074	3	4	164	1	0	0	0	0	1	0	0	0	6380	652	23	4	370	4	GDF5	20	34022074	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	2399451	34022074	29003446	825	136512											
LPIN3	64900	broad.mit.edu	37	chr20	39974619	39974619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaagctgggcgtcctgcGgtcgcgggagaaggtggtga	20	8	0	2	rs139051268		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39974619	T	T	39974619	3	4	164	1	0	0	0	0	1	0	0	0	9007	1116	39	1	178	1	LPIN3	20	39974619	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5952545	39974619	23050901	826	136513											
ZSWIM3	140831	broad.mit.edu	37	chr20	44505598	44505598	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcctgtgcagcccacaaCcaaaaaagaccttgacactg	7	15	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44505598	T	T	44505598	3	4	164	1	0	0	0	0	1	0	0	0	18371	507	18	4	407	4	ZSWIM3	20	44505598	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4530979	44505598	18519922	827	136514											
ZMYND8	23613	broad.mit.edu	37	chr20	45905216	45905216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgacaaggaaatccggcggCctgtgcccccactcagcaca	10	17	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45905216	A	A	45905216	3	1	164	1	0	0	0	0	1	0	0	0	17837	739	26	3	2296	3	ZMYND8	20	45905216	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1399618	45905216	17120304	828	136515											
ZMYND8	23613	broad.mit.edu	37	chr20	45918993	45918993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccaggaaggcttctgtgCagccatacattttctttttc	8	11	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45918993	A	A	45918993	3	1	164	1	0	0	0	0	1	0	0	0	17837	710	25	3	2948	3	ZMYND8	20	45918993	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	13777	45918993	17106527	829	136516											
PREX1	57580	broad.mit.edu	37	chr20	47268039	47268039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaccacgccgtgttccagGtgcacgttgtccacagtcag	10	14	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47268039	T	T	47268039	3	4	164	1	0	0	0	0	1	0	0	0	12582	1252	44	3	2505	3	PREX1	20	47268039	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1349046	47268039	15757481	830	136517											
ARFGEF2	10564	broad.mit.edu	37	chr20	47592674	47592674	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccagacaactgttcaggaTgaccctgagcaatttgaggt	10	10	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47592674	A	A	47592674	3	1	164	1	0	0	0	0	1	0	0	0	855	1461	51	5	1950	5	ARFGEF2	20	47592674	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	324635	47592674	15432846	831	136518											
SALL4	57167	broad.mit.edu	37	chr20	50406727	50406727	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcctggtctcccatcagCgaggatgagtcgttggtcaa	11	11	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50406727	A	A	50406727	2	1	164	1	0	0	0	0	0	0	0	1	13924	755	27	3		3	SALL4	20	50406727	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	2814053	50406727	12618793	832	136519											
TSHZ2	128553	broad.mit.edu	37	chr20	51873149	51873149	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattgcgattagcctggtgAggagctttcttacagggaga	14	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51873149	C	C	51873149	1	2	164	0	1	0	0	0	0	0	0	0	16749	319	11	5		5	TSHZ2	20	51873149	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	1466422	51873149	11152371	833	136520											
SPO11	23626	broad.mit.edu	37	chr20	55914087	55914087	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagtatggatctatggtaaGtatagaaaagcagttttcct	9	4	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55914087	C	C	55914087	1	2	164	0	1	0	0	0	0	0	0	0	15195	1044	36	4		4	SPO11	20	55914087	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4040938	55914087	7111433	834	136521											
ZNF831	128611	broad.mit.edu	37	chr20	57829409	57829409	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgccagggagaccttcaTctggacaaagaatttcagat	9	9	4	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57829409	A	A	57829409	3	1	164	1	0	0	0	0	1	0	0	0	18314	1435	50	5	4663	5	ZNF831	20	57829409	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	1915322	57829409	5196111	835	136522											
EDN3	1908	broad.mit.edu	37	chr20	57896227	57896227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgcctgcacttttgcaCccaaactctggacgtcagca	9	15	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57896227	A	A	57896227	3	1	164	1	0	0	0	0	1	0	0	0	4958	507	18	3	531	3	EDN3	20	57896227	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	66818	57896227	5129293	836	136523											
CDH26	60437	broad.mit.edu	37	chr20	58571518	58571518	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacagttatgtagcatctActggtaccctggaactgtgc	9	10	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58571518	G	G	58571518	1	3	164	0	1	0	0	0	0	0	0	0	3140	406	14	5		5	CDH26	20	58571518	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	675291	58571518	4454002	837	136524											
C20orf195	79025	broad.mit.edu	37	chr20	62187726	62187726	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccatccagccagccacatCggagcagtatgagttgcgct	10	14	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62187726	A	A	62187726	4	1	164	1	0	0	0	0	0	1	0	0	2122	893	31	3	712	3	C20orf195	20	62187726	Nonsense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3616208	62187726	837794	838	136525											
RTEL1	51750	broad.mit.edu	37	chr20	62298989	62298989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtccgagcctttgctGcttcagggccttagatcagc	11	13	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62298989	T	T	62298989	1	4	164	0	1	0	0	0	0	0	0	0	13831	1334	46	3		3	RTEL1	20	62298989	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	111263	62298989	726531	839	136526											
TPTE	7179	broad.mit.edu	37	chr21	10933749	10933749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatatttaaaaatgctaaCaattattaatacatattaat	1	4	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10933749	A	A	10933749	1	1	164	0	1	0	0	0	0	0	0	0	16554	493	17	3		3	TPTE	21	10933749	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08		10933749	37196146	840	136527											
TPTE	7179	broad.mit.edu	37	chr21	10934071	10934071	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acattatgatcatcaatcatGattctaacgaccctattatg	4	9	4	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10934071	T	T	10934071	2	4	164	1	0	0	0	0	0	0	0	1	16554	1280	45	3		3	TPTE	21	10934071	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	322	10934071	37195824	841	136528											
TMPRSS15	5651	broad.mit.edu	37	chr21	19687406	19687406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatctttctttgacactgtAgagtccaaatgcagaggcta	8	8	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19687406	T	T	19687406	1	4	164	0	1	0	0	0	0	0	0	0	16369	435	15	5		5	TMPRSS15	21	19687406	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	8753335	19687406	28442489	842	136529											
KRTAP6-2	337967	broad.mit.edu	37	chr21	31971137	31971137	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatagcctaggccttcgtaTccacagcacccatagccatg	7	16	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31971137	A	A	31971137	2	1	164	1	0	0	0	0	0	0	0	1	8642	1422	50	5		5	KRTAP6-2	21	31971137	Silent	SNP	T	TCGA-50-5941-01A-11D-1753-08	12283731	31971137	16158758	843	136530											
TIAM1	7074	broad.mit.edu	37	chr21	32496832	32496832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttgaacgtccgaatcccCacagtacctgccctgctcat	6	16	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32496832	A	A	32496832	1	1	164	0	1	0	0	0	0	0	0	0	16013	609	21	2		2	TIAM1	21	32496832	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	525695	32496832	15633063	844	136531											
ITSN1	6453	broad.mit.edu	37	chr21	35229038	35229038	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaaatggttgtgttttccAgggtgttcagacttacatct	9	9	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35229038	T	T	35229038	5	4	164	1	0	0	0	0	0	0	1	0	7996	202	7	5	3780	5	ITSN1	21	35229038	Splice_Site	SNP	A	TCGA-50-5941-01A-11D-1753-08	2732206	35229038	12900857	845	136532											
TTC3	7267	broad.mit.edu	37	chr21	38537963	38537963	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgacagatactagaaaaagcAggaggtttaaaaccttttct	8	7	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38537963	T	T	38537963	2	4	164	1	0	0	0	0	0	0	0	1	16823	175	7	5		5	TTC3	21	38537963	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	3308925	38537963	9591932	846	136533											
RSPH1	89765	broad.mit.edu	37	chr21	43902867	43902867	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaacacccagcagaaaaTacaaaatacaaatgtcacca	4	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43902867	A	A	43902867	1	1	164	0	1	0	0	0	0	0	0	0	13813	1421	49	5		5	RSPH1	21	43902867	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	5364904	43902867	4227028	847	136534											
U2AF1	7307	broad.mit.edu	37	chr21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggtttattgtgcaaccgaGagcacctgtctccatgacga	10	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44524456	A	A	44524456	3	1	164	1	0	0	0	0	1	0	0	0	16947	942	33	4	720	4	U2AF1	21	44524456	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	621589	44524456	3605439	848	136535											
RRP1	8568	broad.mit.edu	37	chr21	45220427	45220427	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagttgctaacagactGtttgaaatggccagccgcca	12	10	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45220427	T	T	45220427	2	4	164	1	0	0	0	0	0	0	0	1	13796	1364	48	3		3	RRP1	21	45220427	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	695971	45220427	2909468	849	136536											
TRPM2	7226	broad.mit.edu	37	chr21	45783989	45783989	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgggtgactggtgctgtgtCtttgcaggaaggtggtgtgt	18	5	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45783989	A	A	45783989	1	1	164	0	1	0	0	0	0	0	0	0	16711	928	32	3		3	TRPM2	21	45783989	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	563562	45783989	2345906	850	136537											
PCNT	5116	broad.mit.edu	37	chr21	47801665	47801665	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaagaggagacacttcgGcttcagagtgcacaggcaca	12	9	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47801665	T	T	47801665	2	4	164	1	0	0	0	0	0	0	0	1	11684	1190	42	3		3	PCNT	21	47801665	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	2017676	47801665	328230	851	136538											
PRAME	23532	broad.mit.edu	37	chr22	22892596	22892596	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactggaatgaagggctgctCtgcctctgtgctcaaaccat	10	11	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22892596	T	T	22892596	3	4	164	1	0	0	0	0	1	0	0	0	12525	922	32	4	1032	4	PRAME	22	22892596	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08		22892596	28411970	852	136539											
MYO18B	84700	broad.mit.edu	37	chr22	26270186	26270186	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagtggggtctgatttgcAagcacccccccattgtagac	11	11	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26270186	C	C	26270186	1	2	164	0	1	0	0	0	0	0	0	0	10160	145	5	5		5	MYO18B	22	26270186	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	3377590	26270186	25034380	853	136540											
SLC35E4	339665	broad.mit.edu	37	chr22	31032660	31032660	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggatcttcacagtgcacGgctttgggcggcccctgctg	14	12	2	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31032660	T	T	31032660	3	4	164	1	0	0	0	0	1	0	0	0	14701	1116	39	1	225	1	SLC35E4	22	31032660	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	4762474	31032660	20271906	854	136541											
SMTN	6525	broad.mit.edu	37	chr22	31487707	31487707	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgaccctactcagcaccagTagtgggggcaagagcaccat	11	14	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31487707	A	A	31487707	3	1	164	1	0	0	0	0	1	0	0	0	14928	1635	57	5	1544	5	SMTN	22	31487707	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	455047	31487707	19816859	855	136542											
CSF2RB	1439	broad.mit.edu	37	chr22	37328989	37328989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagaaacactggggagggCgggagaagggaaagcaacca	19	6	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37328989	A	A	37328989	1	1	164	0	1	0	0	0	0	0	0	0	3969	783	27	3		3	CSF2RB	22	37328989	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	5841282	37328989	13975577	856	136543											
CSF2RB	1439	broad.mit.edu	37	chr22	37331522	37331522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggaggtggcagccgagaCcccagagggcactggggaat	18	10	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37331522	A	A	37331522	1	1	164	0	1	0	0	0	0	0	0	0	3969	522	18	3		3	CSF2RB	22	37331522	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2533	37331522	13973044	857	136544											
TRIOBP	11078	broad.mit.edu	37	chr22	38155515	38155515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtcaccccgcctgcagGtctcaaaggtgggatttgag	13	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38155515	T	T	38155515	1	4	164	0	1	0	0	0	0	0	0	0	16678	1261	44	3		3	TRIOBP	22	38155515	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	823993	38155515	13149051	858	136545											
PACSIN2	11252	broad.mit.edu	37	chr22	43284834	43284834	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgagttcctgaatgccaTgtcactgggagttcaggatc	12	8	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43284834	C	C	43284834	1	2	164	0	1	0	0	0	0	0	0	0	11469	1479	51	5		5	PACSIN2	22	43284834	Intron	SNP	T	TCGA-50-5941-01A-11D-1753-08	5129319	43284834	8019732	859	136546											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45122524	45122524	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctatgagggtgagtgtgGgccccttggcggccactctg	15	11	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45122524	C	C	45122524	1	2	164	0	1	0	0	0	0	0	0	0	12707	1247	43	4		4	PRR5-ARHGAP8	22	45122524	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1837690	45122524	6182042	860	136547											
FBLN1	2192	broad.mit.edu	37	chr22	45929753	45929753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcgggactggctatgaGctcacagaggacaatagctg	14	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45929753	T	T	45929753	3	4	164	1	0	0	0	0	1	0	0	0	5755	962	34	3	785	3	FBLN1	22	45929753	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	807229	45929753	5374813	861	136548											
CELSR1	9620	broad.mit.edu	37	chr22	46931885	46931885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaagacgtcccacgcgcCccccaacacgcggtaacgca	10	18	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46931885	A	A	46931885	3	1	164	1	0	0	0	0	1	0	0	0	3251	623	22	2	8001	2	CELSR1	22	46931885	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1002132	46931885	4372681	862	136549											
BRD1	23774	broad.mit.edu	37	chr22	50167916	50167916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcgctggtcggctcccCgtggacgcggctcaggtggt	18	12	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50167916	A	A	50167916	3	1	164	1	0	0	0	0	1	0	0	0	1510	652	23	1	38	1	BRD1	22	50167916	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3236031	50167916	1136650	863	136550											
MSL3	10943	broad.mit.edu	37	chrX	11790301	11790301	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaagcttgtgcctgaCaattaccccccaggtgacca	9	14	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11790301	T	T	11790301	2	4	164	1	0	0	0	0	0	0	0	1	9973	477	17	4		4	MSL3	23	11790301	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08		11790301	143480259	864	136551											
EGFL6	25975	broad.mit.edu	37	chrX	13642112	13642112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagccctccatgagtgatGggttgttattcccattactc	9	10	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13642112	T	T	13642112	1	4	164	0	1	0	0	0	0	0	0	0	5003	1363	47	2		2	EGFL6	23	13642112	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1851811	13642112	141628448	865	136552											
PIR	8544	broad.mit.edu	37	chrX	15444019	15444019	+	Intron	DEL	C	-	-													gtgactactaaaccccagaaCccatcatacctttagggata							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15444019	-	-	15444019	6	5	164	0	1	1	0	1	0	0	0	0	12039	522	18	0		0	PIR	23	15444019	Intron	DEL	C	TCGA-50-5941-01A-11D-1753-08	1801907	15444019	139826541	866	136553											
SH3KBP1	30011	broad.mit.edu	37	chrX	19568124	19568124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggacggaggccgcctccCtgtagcttttggtctgcttg	14	12	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19568124	A	A	19568124	3	1	164	1	0	0	0	0	1	0	0	0	14368	681	24	2	555	2	SH3KBP1	23	19568124	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4124105	19568124	135702436	867	136554											
DMD	1756	broad.mit.edu	37	chrX	32380907	32380907	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagtagatcttcctacctTtccagtcttaattctgtgtg	8	9	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32380907	A	A	32380907	4	1	164	1	0	0	0	0	0	1	0	0	4620	1850	64	5	6054	5	DMD	23	32380907	Nonsense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	12812783	32380907	122889653	868	136555											
DMD	1756	broad.mit.edu	37	chrX	32563439	32563439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggctgagtggtggtgaCagcctgtgaaatctgtgaga	16	5	1	5			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32563439	A	A	32563439	3	1	164	1	0	0	0	0	1	0	0	0	4620	478	17	3	9547	3	DMD	23	32563439	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	182532	32563439	122707121	869	136556											
FAM47C	442444	broad.mit.edu	37	chrX	37026687	37026687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcagtctcctgaagatacGcttgtttgtcgccgtgacga	11	10	2	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37026687	T	T	37026687	2	4	164	1	0	0	0	0	0	0	0	1	5622	1074	38	3		3	FAM47C	23	37026687	Silent	SNP	G	TCGA-50-5941-01A-11D-1753-08	4463248	37026687	118243873	870	136557											
RPGR	6103	broad.mit.edu	37	chrX	38144877	38144877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttaaaagtcgttttgaCtggactggcattttggacct	9	6	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38144877	A	A	38144877	3	1	164	1	0	0	0	0	1	0	0	0	13659	564	20	3	646	3	RPGR	23	38144877	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	1118190	38144877	117125683	871	136558											
OTUD5	55593	broad.mit.edu	37	chrX	48781242	48781242	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtgacgaggctgaactccGctgccgcggggaccggctag	17	12	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48781242	C	C	48781242	3	2	164	1	0	0	0	0	1	0	0	0	11409	1086	38	4	361	4	OTUD5	23	48781242	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	10636365	48781242	106489318	872	136559											
HUWE1	10075	broad.mit.edu	37	chrX	53573634	53573634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttatcctttctccccaaGtcttagcagatcagaagagc	7	11	3	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53573634	T	T	53573634	1	4	164	0	1	0	0	0	0	0	0	0	7531	1044	36	3		3	HUWE1	23	53573634	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	4792392	53573634	101696926	873	136560											
ITIH5L	347365	broad.mit.edu	37	chrX	54818475	54818475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgttgatggtcctaatGgggcaggaaagaggagggac	16	4	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54818475	T	T	54818475	1	4	164	0	1	0	0	0	0	0	0	0	7978	1363	47	2		2	ITIH5L	23	54818475	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1244841	54818475	100452085	874	136561											
PAGE2	203569	broad.mit.edu	37	chrX	55116444	55116444	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataacaatattctgtttgcAgtgggaaatatgagtgagct	10	4	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55116444	T	T	55116444	5	4	164	1	0	0	0	0	0	0	1	0	11484	202	7	5		5	PAGE2	23	55116444	Splice_Site	SNP	A	TCGA-50-5941-01A-11D-1753-08	297969	55116444	100154116	875	136562											
OGT	8473	broad.mit.edu	37	chrX	70783033	70783033	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatttatgacaatcggatAgttctgaatggcatcgacct	8	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70783033	T	T	70783033	2	4	164	1	0	0	0	0	0	0	0	1	10942	410	15	5		5	OGT	23	70783033	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	15666589	70783033	84487527	876	136563											
APOOL	139322	broad.mit.edu	37	chrX	84258822	84258822	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtaactggcaggcaagggGcgtaacggggtggggctgtc	20	8	0	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84258822	T	T	84258822	1	4	164	0	1	0	0	0	0	0	0	0	816	1218	42	3		3	APOOL	23	84258822	5'Flank	SNP	G	TCGA-50-5941-01A-11D-1753-08	13475789	84258822	71011738	877	136564											
POF1B	79983	broad.mit.edu	37	chrX	84634174	84634174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcatagctttctttgttGtacctgagaatggtcgctcc	10	10	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84634174	T	T	84634174	1	4	164	0	1	0	0	0	0	0	0	0	12277	1392	48	3		3	POF1B	23	84634174	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	375352	84634174	70636386	878	136565											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177403	89177403	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtttatcaatgctcgcagaCgcattctcccggatatgctt	9	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89177403	G	G	89177403	3	3	164	1	0	0	0	0	1	0	0	0	15950	536	19	4	321	4	TGIF2LX	23	89177403	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4543229	89177403	66093157	879	136566											
PCDH11X	27328	broad.mit.edu	37	chrX	91138018	91138018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgtgatttcaaaattagGctaagatcattaattttgta	7	3	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91138018	T	T	91138018	1	4	164	0	1	0	0	0	0	0	0	0	11602	1218	42	3		3	PCDH11X	23	91138018	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	1960615	91138018	64132542	880	136567											
SRPX2	27286	broad.mit.edu	37	chrX	99920572	99920572	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctggctctcactttccCgaaggagagcatgtgattcg	12	11	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99920572	A	A	99920572	2	1	164	1	0	0	0	0	0	0	0	1	15283	639	23	1		1	SRPX2	23	99920572	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	8782554	99920572	55349988	881	136568											
BTK	695	broad.mit.edu	37	chrX	100613165	100613165	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctctttaccagcttctacCcagtatcacagggatttcct	5	14	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100613165	T	T	100613165	1	4	164	0	1	0	0	0	0	0	0	0	1567	638	22	4		4	BTK	23	100613165	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	692593	100613165	54657395	882	136569											
TMSB15B	286527	broad.mit.edu	37	chrX	103216341	103216341	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagctttctcaacctgctaTataaaattaccagcaagaaa	4	9	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103216341	C	C	103216341	1	2	164	0	1	0	0	0	0	0	0	0	16379	1421	49	5		5	TMSB15B	23	103216341	5'Flank	SNP	T	TCGA-50-5941-01A-11D-1753-08	2603176	103216341	52054219	883	136570											
COL4A5	1287	broad.mit.edu	37	chrX	107802269	107802269	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaattcacaaatgaccttAcctttcattctcatttaatt	2	9	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107802269	T	T	107802269	1	4	164	0	1	0	0	0	0	0	0	0	3726	406	14	5		5	COL4A5	23	107802269	Intron	SNP	A	TCGA-50-5941-01A-11D-1753-08	4585928	107802269	47468291	884	136571											
COL4A5	1287	broad.mit.edu	37	chrX	107807111	107807111	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatattgcatttttcaGggtgatgatggaattccagg	10	4	1	2	rs104886350		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107807111	T	T	107807111	5	4	164	1	0	0	0	0	0	0	1	0	3726	1014	35	2	245	2	COL4A5	23	107807111	Splice_Site	SNP	G	TCGA-50-5941-01A-11D-1753-08	4842	107807111	47463449	885	136572											
COL4A5	1287	broad.mit.edu	37	chrX	107898561	107898561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttattcgtgttttcagGgtgagcctggtctgcctgga	12	8	2	1	rs104886223		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107898561	T	T	107898561	3	4	164	1	0	0	0	0	1	0	0	0	3726	1246	43	2	3393	2	COL4A5	23	107898561	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	91450	107898561	47371999	886	136573											
IRS4	8471	broad.mit.edu	37	chrX	107977781	107977781	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccatcaccatcggatccTttcccacttcctgagccttt	4	17	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107977781	A	A	107977781	3	1	164	1	0	0	0	0	1	0	0	0	7912	1606	56	5	1983	5	IRS4	23	107977781	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	79220	107977781	47292779	887	136574											
TMEM164	84187	broad.mit.edu	37	chrX	109388104	109388104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacctgctttggaaaggaGgtaaggccagcaaaccacat	10	10	1	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109388104	T	T	109388104	3	4	164	1	0	0	0	0	1	0	0	0	16202	1014	35	2	600	2	TMEM164	23	109388104	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	1410323	109388104	45882456	888	136575											
TRPC5	7224	broad.mit.edu	37	chrX	111078377	111078377	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagagcaggttagttaattCtttaagaagagcaagaaaag	10	3	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111078377	A	A	111078377	1	1	164	0	1	0	0	0	0	0	0	0	16707	928	32	3		3	TRPC5	23	111078377	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	1690273	111078377	44192183	889	136576											
KIAA1210	57481	broad.mit.edu	37	chrX	118223471	118223471	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctggcagtcttattggtAggtgaagacccagctctatc	10	10	2	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118223471	C	C	118223471	2	2	164	1	0	0	0	0	0	0	0	1	8284	407	15	5		5	KIAA1210	23	118223471	Silent	SNP	A	TCGA-50-5941-01A-11D-1753-08	7145094	118223471	37047089	890	136577											
KIAA1210	57481	broad.mit.edu	37	chrX	118284525	118284525	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcagagaagcctcgaggCgtccagccggccctcatttc	12	14	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118284525	A	A	118284525	2	1	164	1	0	0	0	0	0	0	0	1	8284	755	27	3		3	KIAA1210	23	118284525	Silent	SNP	C	TCGA-50-5941-01A-11D-1753-08	61054	118284525	36986035	891	136578											
ODZ1	10178	broad.mit.edu	37	chrX	123519722	123519722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtctgtagcaatcggcCatctcgactatagtcttgga	11	10	3	0			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123519722	A	A	123519722	3	1	164	1	0	0	0	0	1	0	0	0	10929	594	21	2	2333	2	ODZ1	23	123519722	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	5235197	123519722	31750838	892	136579											
FRMD7	90167	broad.mit.edu	37	chrX	131234555	131234555	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttttcatttttcaatcaGggaattgaaccctacatacc	5	9	3	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131234555	A	A	131234555	1	1	164	0	1	0	0	0	0	0	0	0	6115	1015	35	4		4	FRMD7	23	131234555	Intron	SNP	G	TCGA-50-5941-01A-11D-1753-08	7714833	131234555	24036005	893	136580											
HTATSF1	27336	broad.mit.edu	37	chrX	135593508	135593508	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgaagaggaggttggccCcacaaaagagtccgaagaag	14	8	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135593508	T	T	135593508	3	4	164	1	0	0	0	0	1	0	0	0	7503	623	22	4	1638	4	HTATSF1	23	135593508	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	4358953	135593508	19677052	894	136581											
MAGEC3	139081	broad.mit.edu	37	chrX	140985169	140985169	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcctgattgatgaccaggGcatgcccaagaactgtctcc	10	12	1	4			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140985169	C	C	140985169	3	2	164	1	0	0	0	0	1	0	0	0	9274	1203	42	4	1880	4	MAGEC3	23	140985169	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08	5391661	140985169	14285391	895	136582											
MAGEC1	9947	broad.mit.edu	37	chrX	140995914	140995915	+	Missense_Mutation	DNP	GG	TA	TA													cccttgttcacttatacactGgatgaaaaggtggacgagtt							TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	140995915	TA	TA	140995914	3	4	164	1	0	0	0	0	1	0	0	0	9272	1335	47	2	2730	2	MAGEC1	23	140995914	Missense_Mutation	DNP	GG	TCGA-50-5941-01A-11D-1753-08	10745	140995914	14274646	896	136583											
SLITRK4	139065	broad.mit.edu	37	chrX	142718545	142718545	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagttctctatgccaaggAaagtgtcagctcggagaatc	10	10	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142718545	G	G	142718545	3	3	164	1	0	0	0	0	1	0	0	0	14859	246	9	5	2137	5	SLITRK4	23	142718545	Missense_Mutation	SNP	A	TCGA-50-5941-01A-11D-1753-08	1722631	142718545	12552015	897	136584											
SPANXN1	494118	broad.mit.edu	37	chrX	144337347	144337347	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcctgagagaactccatcAatccagtccaagaggaggag	11	10	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144337347	T	T	144337347	1	4	164	0	1	0	0	0	0	0	0	0	15106	145	5	5		5	SPANXN1	23	144337347	3'UTR	SNP	A	TCGA-50-5941-01A-11D-1753-08	1618802	144337347	10933213	898	136585											
SLITRK2	84631	broad.mit.edu	37	chrX	144904874	144904874	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcccaaaatgagaaatcgtCcaactcctcgagtgactgtg	9	12	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144904874	G	G	144904874	3	3	164	1	0	0	0	0	1	0	0	0	14857	855	30	4	933	4	SLITRK2	23	144904874	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	567527	144904874	10365686	899	136586											
AFF2	2334	broad.mit.edu	37	chrX	147743813	147743813	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agactttgacacaggaccagTctcaagccaaactggaagac	9	11	1	3			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147743813	G	G	147743813	3	3	164	1	0	0	0	0	1	0	0	0	357	1667	58	5	575	5	AFF2	23	147743813	Missense_Mutation	SNP	T	TCGA-50-5941-01A-11D-1753-08	2838939	147743813	7526747	900	136587											
AFF2	2334	broad.mit.edu	37	chrX	148037217	148037217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagtcttttatttgtggcCaaaatgaaacacccatggag	8	8	1	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148037217	A	A	148037217	3	1	164	1	0	0	0	0	1	0	0	0	357	595	21	2	1739	2	AFF2	23	148037217	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	293404	148037217	7233343	901	136588											
AFF2	2334	broad.mit.edu	37	chrX	148068787	148068787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacgctatgctaaacttcaCtccagcaaatggcattctga	7	11	2	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148068787	A	A	148068787	1	1	164	0	1	0	0	0	0	0	0	0	357	580	20	3		3	AFF2	23	148068787	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	31570	148068787	7201773	902	136589											
MAGEA10	4109	broad.mit.edu	37	chrX	151303295	151303295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgagcagcttcctgggCtccccataaatgaggtgctc	13	11	0	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151303295	A	A	151303295	3	1	164	1	0	0	0	0	1	0	0	0	9252	796	28	3	315	3	MAGEA10	23	151303295	Missense_Mutation	SNP	C	TCGA-50-5941-01A-11D-1753-08	3234508	151303295	3967265	903	136590											
MTCP1	4515	broad.mit.edu	37	chrX	154293885	154293885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatggaaaataattaagcaaCatgtgtaccattaaatgatg	7	4	0	1			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154293885	T	T	154293885	1	4	164	0	1	0	0	0	0	0	0	0	10009	493	17	4		4	MTCP1	23	154293885	Intron	SNP	C	TCGA-50-5941-01A-11D-1753-08	2990590	154293885	976675	904	136591											
NLGN4Y	22829	broad.mit.edu	37	chrY	16952497	16952497	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catttgcacaacttgaacgaGatattccagtatgtttcaac	6	9	1	2			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16952497	T	T	16952497	3	4	164	1	0	0	0	0	1	0	0	0	10560	933	33	3	1978	3	NLGN4Y	24	16952497	Missense_Mutation	SNP	G	TCGA-50-5941-01A-11D-1753-08		16952497	42421069	905	136592											
HPCA	3208	broad.mit.edu	37	chr1	33354743	33354743	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagcgatggcaccatagacTttcgggagttcatcattgcg	11	10	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33354743	A	A	33354743	3	1	165	1	0	0	0	0	1	0	0	0	7396	1609	56	5	246	5	HPCA	1	33354743	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08		33354743	215895878	1	136593											
SMAP2	64744	broad.mit.edu	37	chr1	40882768	40882769	+	Splice_Site	DNP	GG	TT	TT													ctgcaatggaaccttactcaGgtaagctaccccattttact							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	40882769	TT	TT	40882768	5	4	165	1	0	0	0	0	0	0	1	0	14881	1014	35	2	1198	2	SMAP2	1	40882768	Splice_Site	DNP	GG	TCGA-50-5942-01A-21D-1753-08	7528025	40882768	208367853	2	136594											
C1orf168	199920	broad.mit.edu	37	chr1	57252852	57252852	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggagcatgtacttacctctCtggagacagggagccctctt	11	11	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57252852	A	A	57252852	4	1	165	1	0	0	0	0	0	1	0	0	2032	922	32	3	1305	3	C1orf168	1	57252852	Nonsense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	16370084	57252852	191997769	3	136595											
FUBP1	8880	broad.mit.edu	37	chr1	78444302	78444302	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaactagctcactggagaCacgcgagtgccgcagaagcg	12	12	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78444302	T	T	78444302	1	4	165	0	1	0	0	0	0	0	0	0	6152	493	17	4		4	FUBP1	1	78444302	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	21191450	78444302	170806319	4	136596											
LCE5A	254910	broad.mit.edu	37	chr1	152484327	152484327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgctgccacagctctgGgggctctggctgctgccaca	13	15	2	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152484327	T	T	152484327	3	4	165	1	0	0	0	0	1	0	0	0	8747	1232	43	2	319	2	LCE5A	1	152484327	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	74040025	152484327	96766294	5	136597											
SPTA1	6708	broad.mit.edu	37	chr1	158637883	158637883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaaaaaaaaaaaaaaacCattacctgaagaatgaggga	7	4	0	4			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158637883	A	A	158637883	1	1	165	0	1	0	0	0	0	0	0	0	15234	609	21	2		2	SPTA1	1	158637883	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	6153556	158637883	90612738	6	136598											
ASPM	259266	broad.mit.edu	37	chr1	197098265	197098265	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacataccatgaaagcaagcAaaagtcgtaaatgggaaata	8	6	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197098265	G	G	197098265	1	3	165	0	1	0	0	0	0	0	0	0	1060	145	5	5		5	ASPM	1	197098265	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	38460382	197098265	52152356	7	136599											
LHX9	56956	broad.mit.edu	37	chr1	197890683	197890683	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctggcggccaagagcggCggcctggccctgccttactt	15	14	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197890683	A	A	197890683	2	1	165	1	0	0	0	0	0	0	0	1	8849	755	27	3		3	LHX9	1	197890683	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08	792418	197890683	51359938	8	136600											
PTPRC	5788	broad.mit.edu	37	chr1	198668699	198668699	+	Frame_Shift_Del	DEL	C	-	-													ctttcctaccttaggtgtttCatcagtacagacgcctcacc							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	198668699	-	-	198668699	7	5	165	1	0	1	0	1	0	0	0	0	12905	838	29	0	324	0	PTPRC	1	198668699	Frame_Shift_Del	DEL	C	TCGA-50-5942-01A-21D-1753-08	778016	198668699	50581922	9	136601											
KCNH1	3756	broad.mit.edu	37	chr1	211280615	211280615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaggtgctgcttttttGcatcacttctgccctgtgat	9	12	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211280615	T	T	211280615	3	4	165	1	0	0	0	0	1	0	0	0	8101	1328	46	3	2825	3	KCNH1	1	211280615	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	12611916	211280615	37970006	10	136602											
KCTD3	51133	broad.mit.edu	37	chr1	215792243	215792243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaatatgtgagatccaGgctgttgactgtactacaat	10	7	0	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215792243	T	T	215792243	3	4	165	1	0	0	0	0	1	0	0	0	8180	991	35	2	1640	2	KCTD3	1	215792243	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	4511628	215792243	33458378	11	136603											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220344182	220344182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttctattaaaagaaaCcctcgtaacataaaaaaatg	4	7	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220344182	A	A	220344182	1	1	165	0	1	0	0	0	0	0	0	0	13044	522	18	3		3	RAB3GAP2	1	220344182	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	4551939	220344182	28906439	12	136604											
OR2W3	343171	broad.mit.edu	37	chr1	248059653	248059653	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccttttctatggaaacatCatctacatgtacatgcagcc	5	12	3	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059653	A	A	248059653	2	1	165	1	0	0	0	0	0	0	0	1	11127	816	29	3		3	OR2W3	1	248059653	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08	27715471	248059653	1190968	13	136605											
SLC8A1	6546	broad.mit.edu	37	chr2	40342549	40342549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgatacagcagcaccccCacattgatgaaagcaaaaat	7	13	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40342549	A	A	40342549	2	1	165	1	0	0	0	0	0	0	0	1	14820	581	21	2		2	SLC8A1	2	40342549	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08		40342549	202856824	14	136606											
KLRAQ1	129285	broad.mit.edu	37	chr2	48738497	48738497	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatgagctgacaactaccAagaggagttacgaggatcag	13	7	1	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48738497	T	T	48738497	4	4	165	1	0	0	0	0	0	1	0	0	8484	131	5	5	2285	5	KLRAQ1	2	48738497	Nonsense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	8395948	48738497	194460876	15	136607											
ACOXL	55289	broad.mit.edu	37	chr2	111726073	111726073	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgaagatgcttacaagaaAcagttctctcaatacacaaa	6	8	2	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111726073	T	T	111726073	1	4	165	0	1	0	0	0	0	0	0	0	161	58	2	5		5	ACOXL	2	111726073	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	62987576	111726073	131473300	16	136608											
XIRP2	129446	broad.mit.edu	37	chr2	168103814	168103814	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaggttgctgtccagaGgaacaaaaatagtcttcttc	8	9	4	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168103814	A	A	168103814	3	1	165	1	0	0	0	0	1	0	0	0	17557	1000	35	4	5942	4	XIRP2	2	168103814	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	56377741	168103814	75095559	17	136609											
ZNF804A	91752	broad.mit.edu	37	chr2	185803464	185803464	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctgctgcagctgcagCtgcagccgcagctgcaggaa	14	13	0	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185803464	G	G	185803464	3	3	165	1	0	0	0	0	1	0	0	0	18299	797	28	4	3355	4	ZNF804A	2	185803464	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	17699650	185803464	57395909	18	136610											
PASK	23178	broad.mit.edu	37	chr2	242066933	242066933	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaaaaggagagattgcaccGattctccattagaactaagt	8	8	2	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242066933	A	A	242066933	1	1	165	0	1	0	0	0	0	0	0	0	11566	1073	37	4		4	PASK	2	242066933	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	56263469	242066933	1132440	19	136611											
D2HGDH	728294	broad.mit.edu	37	chr2	242680508	242680508	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgtcccacatcctcaggtGaggtggtggctcccggctcc	14	14	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242680508	T	T	242680508	1	4	165	0	1	0	0	0	0	0	0	0	4246	1305	45	3		3	D2HGDH	2	242680508	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	613575	242680508	518865	20	136612											
LRRFIP2	9209	broad.mit.edu	37	chr3	37151074	37151074	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagaggcctaagaaaaaaGtgtattattaaaccccaaaa	8	6	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37151074	C	C	37151074	1	2	165	0	1	0	0	0	0	0	0	0	9115	1044	36	4		4	LRRFIP2	3	37151074	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08		37151074	160871356	21	136613											
PRSS42	339906	broad.mit.edu	37	chr3	46873306	46873306	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaactaggtgtgaatagagGaagcagcaaataacccagac	10	8	1	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46873306	A	A	46873306	1	1	165	0	1	0	0	0	0	0	0	0	12734	1189	41	4		4	PRSS42	3	46873306	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	9722232	46873306	151149124	22	136614											
SETD2	29072	broad.mit.edu	37	chr3	47142964	47142964	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttacccatatctctggaactGatagtcaaacgttaactctg	6	10	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47142964	A	A	47142964	4	1	165	1	0	0	0	0	0	1	0	0	14244	1299	45	4	2751	4	SETD2	3	47142964	Nonsense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	269658	47142964	150879466	23	136615											
SETD2	29072	broad.mit.edu	37	chr3	47155459	47155459	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttctctgaaaccgtctaTtggaacaataatccccattt	5	10	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47155459	C	C	47155459	3	2	165	1	0	0	0	0	1	0	0	0	14244	1493	52	5	3140	5	SETD2	3	47155459	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08	12495	47155459	150866971	24	136616											
SETD2	29072	broad.mit.edu	37	chr3	47161858	47161859	+	Frame_Shift_Ins	INS	-	C	C													cactctaactttctttctgtINScctgaagctcaccatcactt							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47161859	C	C	47161858	7	5	165	1	0	1	1	0	0	0	0	0	14244	1667	58	0	3502	0	SETD2	3	47161858	Frame_Shift_Ins	INS	-	TCGA-50-5942-01A-21D-1753-08	6399	47161858	150860572	25	136617											
GLYCTK	132158	broad.mit.edu	37	chr3	52326927	52326928	+	Missense_Mutation	DNP	GG	AT	AT													ttttgagcggtggcaccgatGggcaggatgggcccacagag							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	52326928	AT	AT	52326927	3	1	165	1	0	0	0	0	1	0	0	0	6546	1348	47	4	1371	4	GLYCTK	3	52326927	Missense_Mutation	DNP	GG	TCGA-50-5942-01A-21D-1753-08	5165069	52326927	145695503	26	136618											
EPHA6	285220	broad.mit.edu	37	chr3	96706498	96706498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagatggatttgggtgatCgcatcctcaaactcaacact	8	12	2	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96706498	A	A	96706498	3	1	165	1	0	0	0	0	1	0	0	0	5213	884	31	3	785	3	EPHA6	3	96706498	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	44379571	96706498	101315932	27	136619											
SLC9A10	285335	broad.mit.edu	37	chr3	111996575	111996575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcagctgcggttagcatggGatctgaactcacaaggatag	13	8	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111996575	T	T	111996575	3	4	165	1	0	0	0	0	1	0	0	0	14824	1174	41	3	3182	3	SLC9A10	3	111996575	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	15290077	111996575	86025855	28	136620											
SLC2A2	6514	broad.mit.edu	37	chr3	170715646	170715646	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcatcatttaaaaacagacGgttcccttattgtttctgtt	5	8	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170715646	A	A	170715646	1	1	165	0	1	0	0	0	0	0	0	0	14658	1131	39	4		4	SLC2A2	3	170715646	3'UTR	SNP	G	TCGA-50-5942-01A-21D-1753-08	58719071	170715646	27306784	29	136621											
KLHL6	89857	broad.mit.edu	37	chr3	183217479	183217479	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagcgggagcttggccaccTccaggcggctgcgcctcagg	15	14	1	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183217479	C	C	183217479	3	2	165	1	0	0	0	0	1	0	0	0	8464	1551	54	5	835	5	KLHL6	3	183217479	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08	12501833	183217479	14804951	30	136622											
CCDC50	152137	broad.mit.edu	37	chr3	191093239	191093239	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcgactttcacccaagtcCtcacaaaaagcagggcttca	7	13	3	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191093239	A	A	191093239	1	1	165	0	1	0	0	0	0	0	0	0	2848	668	24	2		2	CCDC50	3	191093239	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	7875760	191093239	6929191	31	136623											
ANKRD17	26057	broad.mit.edu	37	chr4	74043241	74043241	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatcctgatccaaaatgaAagactccacctataaaacaa	3	11	1	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74043241	C	C	74043241	3	2	165	1	0	0	0	0	1	0	0	0	646	14	1	5	7540	5	ANKRD17	4	74043241	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08		74043241	117111035	32	136624											
CCDC158	339965	broad.mit.edu	37	chr4	77283379	77283379	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacggagccgctcagagccTgcattcaccagcttcacctt	9	16	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77283379	C	C	77283379	2	2	165	1	0	0	0	0	0	0	0	1	2817	1567	55	5		5	CCDC158	4	77283379	Silent	SNP	T	TCGA-50-5942-01A-21D-1753-08	3240138	77283379	113870897	33	136625											
WDFY3	23001	broad.mit.edu	37	chr4	85626628	85626628	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcccattggcttagccaGgtttctaaacgtcttgggat	10	10	2	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85626628	A	A	85626628	2	1	165	1	0	0	0	0	0	0	0	1	17397	991	35	4		4	WDFY3	4	85626628	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08	8343249	85626628	105527648	34	136626											
NHEDC1	150159	broad.mit.edu	37	chr4	103822564	103822568	+	Intron	DEL	TAAAA	-	-													tataatgtaaatggctctgtTaaaataaacaaaatctagta							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103822568	-	-	103822564	6	5	165	0	1	1	0	1	0	0	0	0	10495	1769	61	0		0	NHEDC1	4	103822564	Intron	DEL	TAAAA	TCGA-50-5942-01A-21D-1753-08	18195936	103822564	87331712	35	136627											
FGB	2244	broad.mit.edu	37	chr4	155487738	155487738	+	Frame_Shift_Del	DEL	A	-	-													tgagttaaataacaatgtggAagctgtttcccagacctcct							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155487738	-	-	155487738	7	5	165	1	0	1	0	1	0	0	0	0	5888	246	9	0	414	0	FGB	4	155487738	Frame_Shift_Del	DEL	A	TCGA-50-5942-01A-21D-1753-08	51665174	155487738	35666538	36	136628											
GRIA2	2891	broad.mit.edu	37	chr4	158256853	158256853	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgttatgatgaagaaaaatCatgaaatgcttgaaggcaat	9	3	1	5			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158256853	A	A	158256853	3	1	165	1	0	0	0	0	1	0	0	0	6834	826	29	3	1335	3	GRIA2	4	158256853	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	2769115	158256853	32897423	37	136629											
RAPGEF2	9693	broad.mit.edu	37	chr4	160264217	160264217	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactatttcaagatctccAagacctgtttgatccttcca	4	11	2	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160264217	G	G	160264217	3	3	165	1	0	0	0	0	1	0	0	0	13152	130	5	5	2580	5	RAPGEF2	4	160264217	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	2007364	160264217	30890059	38	136630											
CDH10	1008	broad.mit.edu	37	chr5	24498627	24498627	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgttgtctctttgggattGtctggaaaaggggaagaaaa	14	4	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24498627	C	C	24498627	3	2	165	1	0	0	0	0	1	0	0	0	3126	1391	48	4	987	4	CDH10	5	24498627	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08		24498627	156416633	39	136631											
PDZD2	23037	broad.mit.edu	37	chr5	32093041	32093041	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacttctagtctcagcggggGaccagcaaagattacagtct	10	10	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32093041	A	A	32093041	3	1	165	1	0	0	0	0	1	0	0	0	11795	1174	41	4	7834	4	PDZD2	5	32093041	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	7594414	32093041	148822219	40	136632											
C5orf33	133686	broad.mit.edu	37	chr5	36211993	36211993	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttcatttagtgctctcacTggcagaagttggggtcctga	11	9	2	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36211993	A	A	36211993	2	1	165	1	0	0	0	0	0	0	0	1	2315	1567	55	5		5	C5orf33	5	36211993	Silent	SNP	T	TCGA-50-5942-01A-21D-1753-08	4118952	36211993	144703267	41	136633											
NIPBL	25836	broad.mit.edu	37	chr5	37064848	37064848	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctaagcgccgtgatggcCgcaaactggtgccttgggta	15	10	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37064848	T	T	37064848	3	4	165	1	0	0	0	0	1	0	0	0	10523	652	23	4	8496	4	NIPBL	5	37064848	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	852855	37064848	143850412	42	136634											
GPR98	84059	broad.mit.edu	37	chr5	90074798	90074798	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcctgcagcaggggagctCctctttgaagcaggggagat	15	9	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90074798	A	A	90074798	2	1	165	1	0	0	0	0	0	0	0	1	6787	842	30	3		3	GPR98	5	90074798	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08	53009950	90074798	90840462	43	136635											
PCDHB7	56129	broad.mit.edu	37	chr5	140553994	140553994	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacgaggccctgcaggcGttcgagttccgcgtgggcgc	16	13	0	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140553994	T	T	140553994	2	4	165	1	0	0	0	0	0	0	0	1	11641	1132	40	3		3	PCDHB7	5	140553994	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08	50479196	140553994	40361266	44	136636											
PCDHB15	56121	broad.mit.edu	37	chr5	140626217	140626217	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttaccagccctattccCgagaattctccagagacaga	6	14	2	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140626217	A	A	140626217	2	1	165	1	0	0	0	0	0	0	0	1	11634	639	23	1		1	PCDHB15	5	140626217	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08	72223	140626217	40289043	45	136637											
SLC17A1	6568	broad.mit.edu	37	chr6	25813103	25813103	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagttgataaacattggagTgtatagtgtcatgatgttat	12	2	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25813103	C	C	25813103	3	2	165	1	0	0	0	0	1	0	0	0	14529	1696	59	5	570	5	SLC17A1	6	25813103	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08		25813103	145301964	46	136638											
GABBR1	2550	broad.mit.edu	37	chr6	29527451	29527451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttatcaaatcccaacttaCacagaggcaggaagcattgg	8	10	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29527451	A	A	29527451	1	1	165	0	1	0	0	0	0	0	0	0	6215	492	17	3		3	GABBR1	6	29527451	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	3714348	29527451	141587616	47	136639											
TNXB	7148	broad.mit.edu	37	chr6	32011811	32011811	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccagctggtaggagacttTgaagctgtccgcccgggatg	15	11	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32011811	C	C	32011811	3	2	165	1	0	0	0	0	1	0	0	0	16469	1821	63	5	3404	5	TNXB	6	32011811	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08	2484360	32011811	139103256	48	136640											
C6orf222	389384	broad.mit.edu	37	chr6	36298275	36298275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcagtgagcctctgcagAtggagctgggctgtctgaat	16	8	2	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36298275	T	T	36298275	3	4	165	1	0	0	0	0	1	0	0	0	2379	333	12	5	1809	5	C6orf222	6	36298275	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	4286464	36298275	134816792	49	136641											
UBR2	23304	broad.mit.edu	37	chr6	42600256	42600256	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcctagtacatagtttttGattaccatgcactctgataa	5	9	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42600256	A	A	42600256	1	1	165	0	1	0	0	0	0	0	0	0	17028	1305	45	4		4	UBR2	6	42600256	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	6301981	42600256	128514811	50	136642											
TINAG	27283	broad.mit.edu	37	chr6	54219236	54219236	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caatttacccattggttgttCcgtgaaattttctggtggtt	9	7	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54219236	A	A	54219236	1	1	165	0	1	0	0	0	0	0	0	0	16044	870	30	3		3	TINAG	6	54219236	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	11618980	54219236	116895831	51	136643											
EYS	346007	broad.mit.edu	37	chr6	66013942	66013942	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggggcaaggttgctactgCgaatcaccaaaagaacatgg	12	9	1	1	rs138546306	by1000genomes	TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66013942	G	G	66013942	1	3	165	0	1	0	0	0	0	0	0	0	5375	783	27	4		4	EYS	6	66013942	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	11794706	66013942	105101125	52	136644											
COL19A1	1310	broad.mit.edu	37	chr6	70856622	70856622	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatattatagttaatttttAaggaatgaataattaacaaa	4	1	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70856622	G	G	70856622	1	3	165	0	1	0	0	0	0	0	0	0	3708	377	13	5		5	COL19A1	6	70856622	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	4842680	70856622	100258445	53	136645											
BCKDHB	594	broad.mit.edu	37	chr6	81053483	81053483	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctacatcccagacaaatggAagtgttatgatgcccttcga	8	10	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81053483	C	C	81053483	3	2	165	1	0	0	0	0	1	0	0	0	1365	247	9	5	1179	5	BCKDHB	6	81053483	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	10196861	81053483	90061584	54	136646											
CCNC	892	broad.mit.edu	37	chr6	99994324	99994324	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctggcatctttctgctGtacaacacaggctacatgta	8	11	2	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99994324	A	A	99994324	4	1	165	1	0	0	0	0	0	1	0	0	2945	1386	48	4	238	4	CCNC	6	99994324	Nonsense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	18940841	99994324	71120743	55	136647											
WIPI2	26100	broad.mit.edu	37	chr7	5239317	5239317	+	Intron	DEL	C	-	-													tttgctttatttttccccttCttaaaaaaaaaaaaaaaagt							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5239317	-	-	5239317	6	5	165	0	1	1	0	1	0	0	0	0	17498	928	32	0		0	WIPI2	7	5239317	Intron	DEL	C	TCGA-50-5942-01A-21D-1753-08		5239317	153899346	56	136648											
C7orf28B	221960	broad.mit.edu	37	chr7	6840708	6840708	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcatcttcatccactcTgcaagacgagggtcaaaatg	7	13	5	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6840708	A	A	6840708	5	1	165	1	0	0	0	0	0	0	1	0	2409	1594	55	5	192	5	C7orf28B	7	6840708	Splice_Site	SNP	T	TCGA-50-5942-01A-21D-1753-08	1601391	6840708	152297955	57	136649											
ZNF655	79027	broad.mit.edu	37	chr7	99170026	99170026	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggacagattagaaagaCttcaggaaattctaaggaaa	10	5	2	4			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99170026	G	G	99170026	3	3	165	1	0	0	0	0	1	0	0	0	18195	565	20	4	832	4	ZNF655	7	99170026	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	92329318	99170026	59968637	58	136650											
LAMB4	22798	broad.mit.edu	37	chr7	107696313	107696313	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagcacaagtgacattgAagacaagtagggaattcctg	10	7	1	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107696313	G	G	107696313	2	3	165	1	0	0	0	0	0	0	0	1	8685	233	9	5		5	LAMB4	7	107696313	Silent	SNP	A	TCGA-50-5942-01A-21D-1753-08	8526287	107696313	51442350	59	136651											
BRAF	673	broad.mit.edu	37	chr7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccactccatcgagatttcActgtagctagaccaaaatca	5	13	2	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140453136	T	T	140453136	3	4	165	1	0	0	0	0	1	0	0	0	1505	159	6	5	517	5	BRAF	7	140453136	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	32756823	140453136	18685527	60	136652											
COL14A1	7373	broad.mit.edu	37	chr8	121345021	121345021	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtaggcccagtcatcacGtttatttatgtgtttaaatt	7	6	2	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121345021	A	A	121345021	1	1	165	0	1	0	0	0	0	0	0	0	3703	1160	40	4		4	COL14A1	8	121345021	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08		121345021	25019001	61	136653											
PTPRD	5789	broad.mit.edu	37	chr9	8317972	8317972	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatgaatggggagaagcaAaagaagggaccatgagcata	13	5	0	4			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8317972	G	G	8317972	1	3	165	0	1	0	0	0	0	0	0	0	12907	29	1	5		5	PTPRD	9	8317972	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08		8317972	132895459	62	136654											
PIGO	84720	broad.mit.edu	37	chr9	35091859	35091859	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaacagggccaccagcgcCgccacacaagctccatacca	8	18	0	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35091859	A	A	35091859	2	1	165	1	0	0	0	0	0	0	0	1	11989	639	23	1		1	PIGO	9	35091859	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08	26773887	35091859	106121572	63	136655											
FAM75A3	727830	broad.mit.edu	37	chr9	40701622	40701622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggcagagagggagagcCggtcctagcttcttaccctt	14	11	1	2	rs150236353	by1000genomes	TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40701622	A	A	40701622	1	1	165	0	1	0	0	0	0	0	0	0	5672	667	23	1		1	FAM75A3	9	40701622	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	5609763	40701622	100511809	64	136656											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69391003	69391003	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacatctatactgacaggcgGatattaaactggtaaagtgt	9	6	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69391003	T	T	69391003	1	4	165	0	1	0	0	0	0	0	0	0	650	1189	41	3		3	ANKRD20A4	9	69391003	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	28689381	69391003	71822428	65	136657											
TRPM6	140803	broad.mit.edu	37	chr9	77354328	77354328	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcacttggttgaaggtaTagatcaatttttgagcagct	10	5	2	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77354328	G	G	77354328	3	3	165	1	0	0	0	0	1	0	0	0	16715	1406	49	5	563	5	TRPM6	9	77354328	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08	7963325	77354328	63859103	66	136658											
TLE1	7088	broad.mit.edu	37	chr9	84231652	84231652	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacgccatttactaaaagcTaagaataggtttgaggcaca	8	7	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84231652	A	A	84231652	1	1	165	0	1	0	0	0	0	0	0	0	16061	1537	53	5		5	TLE1	9	84231652	Intron	SNP	T	TCGA-50-5942-01A-21D-1753-08	6877324	84231652	56981779	67	136659											
PRPF4	9128	broad.mit.edu	37	chr9	116053798	116053798	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatgataacacagccaagaTctggacgcacccaggctggt	10	12	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116053798	C	C	116053798	3	2	165	1	0	0	0	0	1	0	0	0	12676	1435	50	5	1481	5	PRPF4	9	116053798	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08	31822146	116053798	25159633	68	136660											
RABGAP1	23637	broad.mit.edu	37	chr9	125791622	125791622	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttttacttaataaagttTtatttttccaaatgtagagt	4	3	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125791622	C	C	125791622	1	2	165	0	1	0	0	0	0	0	0	0	13072	1856	64	5		5	RABGAP1	9	125791622	Intron	SNP	T	TCGA-50-5942-01A-21D-1753-08	9737824	125791622	15421809	69	136661											
BAMBI	25805	broad.mit.edu	37	chr10	28970558	28970558	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtatgtctgctattgatTttgttgttaatgtaattaga	8	2	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28970558	A	A	28970558	1	1	165	0	1	0	0	0	0	0	0	0	1311	1856	64	5		5	BAMBI	10	28970558	Intron	SNP	T	TCGA-50-5942-01A-21D-1753-08		28970558	106564189	70	136662											
RBP3	5949	broad.mit.edu	37	chr10	48385969	48385969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaacctcaagtagccaatGttgtcctcaagcacgttagt	7	11	3	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48385969	T	T	48385969	3	4	165	1	0	0	0	0	1	0	0	0	13265	1368	48	3	632	3	RBP3	10	48385969	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	19415411	48385969	87148778	71	136663											
LUZP2	338645	broad.mit.edu	37	chr11	24750659	24750659	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagtgttagtgattatgActgatgccaagtggaaccat	12	5	0	4			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24750659	T	T	24750659	1	4	165	0	1	0	0	0	0	0	0	0	9174	290	10	5		5	LUZP2	11	24750659	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08		24750659	110255857	72	136664											
OR4C15	81309	broad.mit.edu	37	chr11	55322400	55322400	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtagcctggacagggggcctCttgcattccatgatacaaat	11	10	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55322400	T	T	55322400	2	4	165	1	0	0	0	0	0	0	0	1	11142	900	32	4		4	OR4C15	11	55322400	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08	30571741	55322400	79684116	73	136665											
PLAC1L	219990	broad.mit.edu	37	chr11	59807989	59807989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttggaccggtgctgagaaCctccatggtaaataacaagt	10	8	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59807989	A	A	59807989	3	1	165	1	0	0	0	0	1	0	0	0	12108	506	18	3	59	3	PLAC1L	11	59807989	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	4485589	59807989	75198527	74	136666											
SAPS3	55291	broad.mit.edu	37	chr11	68331711	68331711	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaagacatacatggtcgAtaaccttgaatgatttgttc	8	6	0	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68331711	G	G	68331711	1	3	165	0	1	0	0	0	0	0	0	0	13950	348	12	5		5	SAPS3	11	68331711	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	8523722	68331711	66674805	75	136667											
RSF1	51773	broad.mit.edu	37	chr11	77378462	77378462	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaatactcgtctgtgcttcGgccccgctttcgaactgacc	9	14	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77378462	A	A	77378462	4	1	165	1	0	0	0	0	0	1	0	0	13810	1124	39	4	503	4	RSF1	11	77378462	Nonsense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	9046751	77378462	57628054	76	136668											
ALG9	79796	broad.mit.edu	37	chr11	111708285	111708285	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggacagtgtggatggttgGgtctgtagcaattcggtaaa	16	4	1	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111708285	A	A	111708285	3	1	165	1	0	0	0	0	1	0	0	0	524	1232	43	4	494	4	ALG9	11	111708285	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	34329823	111708285	23298231	77	136669											
C12orf39	80763	broad.mit.edu	37	chr12	21679861	21679861	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaccttggctcttttcctGgtgtttgttttcctgggaaa	9	9	1	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21679861	T	T	21679861	2	4	165	1	0	0	0	0	0	0	0	1	1697	1335	47	2		2	C12orf39	12	21679861	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08		21679861	112172034	78	136670											
TMTC1	83857	broad.mit.edu	37	chr12	29786142	29786142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccgccagaaagatggtggCtaagttccgcatgtcccata	10	11	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29786142	A	A	29786142	3	1	165	1	0	0	0	0	1	0	0	0	16383	797	28	3	1634	3	TMTC1	12	29786142	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	8106281	29786142	104065753	79	136671											
ZFC3H1	196441	broad.mit.edu	37	chr12	72013257	72013257	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattaaaatgtcacgagggaGaaaaaaagccttaaaaaagt	8	4	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72013257	C	C	72013257	1	2	165	0	1	0	0	0	0	0	0	0	17759	957	33	4		4	ZFC3H1	12	72013257	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	42227115	72013257	61838638	80	136672											
MGAT4C	25834	broad.mit.edu	37	chr12	86377333	86377333	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgtggcagctaggtagCgataggtgacatttatggct	15	5	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86377333	T	T	86377333	3	4	165	1	0	0	0	0	1	0	0	0	9640	768	27	4	1181	4	MGAT4C	12	86377333	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	14364076	86377333	47474562	81	136673											
DHX37	57647	broad.mit.edu	37	chr12	125441662	125441662	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccacggaggggggcgtcGggaaggggaagttgatgacc	19	8	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125441662	A	A	125441662	3	1	165	1	0	0	0	0	1	0	0	0	4550	1116	39	4	1340	4	DHX37	12	125441662	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	39064329	125441662	8410233	82	136674											
MYH6	4624	broad.mit.edu	37	chr14	23862750	23862750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgaccaaaaacccatcccCtttagggtcaaagatcacca	6	15	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23862750	A	A	23862750	1	1	165	0	1	0	0	0	0	0	0	0	10132	696	24	2		2	MYH6	14	23862750	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08		23862750	83486790	83	136675											
TTLL5	23093	broad.mit.edu	37	chr14	76211439	76211439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattttcttctccttagcGttgccgtccactctctgcca	5	15	4	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76211439	T	T	76211439	3	4	165	1	0	0	0	0	1	0	0	0	16856	1159	40	3	1341	3	TTLL5	14	76211439	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	52348689	76211439	31138101	84	136676											
NRXN3	9369	broad.mit.edu	37	chr14	79117585	79117585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgctgggctcggacgaCttcttctatgtaggaggaag	13	9	2	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79117585	A	A	79117585	3	1	165	1	0	0	0	0	1	0	0	0	10762	564	20	3	20	3	NRXN3	14	79117585	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	2906146	79117585	28231955	85	136677											
AQR	9716	broad.mit.edu	37	chr15	35149010	35149010	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggctacttggtctcttccgGggcagatgtggcatcctgag	14	10	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35149010	C	C	35149010	3	2	165	1	0	0	0	0	1	0	0	0	837	1232	43	4	20	4	AQR	15	35149010	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08		35149010	67382382	86	136678											
SLC12A1	6557	broad.mit.edu	37	chr15	48527175	48527175	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctactgggattcttgctGgtgccaatatctcaggagat	11	9	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48527175	C	C	48527175	3	2	165	1	0	0	0	0	1	0	0	0	14495	1348	47	4	1319	4	SLC12A1	15	48527175	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	13378165	48527175	54004217	87	136679											
TRPM7	54822	broad.mit.edu	37	chr15	50875388	50875388	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaatataaaaaagctAcacaactgaagttttatgaa	4	4	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50875388	G	G	50875388	1	3	165	0	1	0	0	0	0	0	0	0	16716	406	14	5		5	TRPM7	15	50875388	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	2348213	50875388	51656004	88	136680											
UNC13C	440279	broad.mit.edu	37	chr15	54707189	54707189	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggttttaggtttcctcaAgagctgaacatgggaaaaat	10	5	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54707189	G	G	54707189	2	3	165	1	0	0	0	0	0	0	0	1	17112	69	3	5		5	UNC13C	15	54707189	Silent	SNP	A	TCGA-50-5942-01A-21D-1753-08	3831801	54707189	47824203	89	136681											
CGNL1	84952	broad.mit.edu	37	chr15	57823948	57823948	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaactcagatttgctgTctgagaggatcagtaggagc	12	7	3	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57823948	C	C	57823948	3	2	165	1	0	0	0	0	1	0	0	0	3334	1667	58	5	3312	5	CGNL1	15	57823948	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08	3116759	57823948	44707444	90	136682											
TIPIN	54962	broad.mit.edu	37	chr15	66639557	66639557	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaacatgtatggagcCatcgcacagaaaatctgata	7	8	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66639557	A	A	66639557	1	1	165	0	1	0	0	0	0	0	0	0	16048	609	21	2		2	TIPIN	15	66639557	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	8815609	66639557	35891835	91	136683											
BBS4	585	broad.mit.edu	37	chr15	73016905	73016905	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatgccctgaatcttaatAggcacgatctgacttatata	6	9	2	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73016905	G	G	73016905	3	3	165	1	0	0	0	0	1	0	0	0	1344	411	15	5	526	5	BBS4	15	73016905	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	6377348	73016905	29514487	92	136684											
WDR61	80349	broad.mit.edu	37	chr15	78578502	78578502	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaagtttcaaacaaaaTtgagatgttaatttctacag	8	4	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78578502	C	C	78578502	1	2	165	0	1	0	0	0	0	0	0	0	17439	1508	52	5		5	WDR61	15	78578502	Intron	SNP	T	TCGA-50-5942-01A-21D-1753-08	5561597	78578502	23952890	93	136685											
IREB2	3658	broad.mit.edu	37	chr15	78790371	78790371	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagatgtttttgctcctttCaagacaagcactggaaaagt	9	7	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78790371	T	T	78790371	1	4	165	0	1	0	0	0	0	0	0	0	7896	841	29	4		4	IREB2	15	78790371	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	211869	78790371	23741021	94	136686											
KIAA1024	23251	broad.mit.edu	37	chr15	79749976	79749976	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgcacctctggtcaggGcaagtacagtgacaggcaca	12	12	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79749976	A	A	79749976	3	1	165	1	0	0	0	0	1	0	0	0	8275	1203	42	4	1489	4	KIAA1024	15	79749976	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	959605	79749976	22781416	95	136687											
MAN2A2	4122	broad.mit.edu	37	chr15	91453496	91453496	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcccttctacaagagcttAgaccgagtcctggaagccca	10	14	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91453496	C	C	91453496	3	2	165	1	0	0	0	0	1	0	0	0	9307	417	15	5	1585	5	MAN2A2	15	91453496	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	11703520	91453496	11077896	96	136688											
SMG1	23049	broad.mit.edu	37	chr16	18850990	18850990	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcaaaagaaatactactActgagtatagtctaaaacaa	6	7	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18850990	T	T	18850990	1	4	165	0	1	0	0	0	0	0	0	0	14909	406	14	5		5	SMG1	16	18850990	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08		18850990	71503763	97	136689											
CDR2	1039	broad.mit.edu	37	chr16	22358221	22358221	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcagagtctacaaacaCttgtctgaatgggagagaga	12	7	3	4			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22358221	A	A	22358221	1	1	165	0	1	0	0	0	0	0	0	0	3202	580	20	3		3	CDR2	16	22358221	3'UTR	SNP	C	TCGA-50-5942-01A-21D-1753-08	3507231	22358221	67996532	98	136690											
GSG1L	146395	broad.mit.edu	37	chr16	27840097	27840097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtggccagaggtaacccCctgtgcactgacctctcccg	12	15	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27840097	A	A	27840097	1	1	165	0	1	0	0	0	0	0	0	0	6887	638	22	2		2	GSG1L	16	27840097	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	5481876	27840097	62514656	99	136691											
HIRIP3	8479	broad.mit.edu	37	chr16	30006824	30006824	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacggagtcccgacccaccCgcgccctttccaaccccatc	8	21	0	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30006824	A	A	30006824	1	1	165	0	1	0	0	0	0	0	0	0	7188	667	23	1		1	HIRIP3	16	30006824	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	2166727	30006824	60347929	100	136692											
DUS2L	54920	broad.mit.edu	37	chr16	68087630	68087630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccaactcatgccctgtGccaggccagtgttgaatacc	8	14	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68087630	T	T	68087630	1	4	165	0	1	0	0	0	0	0	0	0	4846	1334	46	3		3	DUS2L	16	68087630	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	38080806	68087630	22267123	101	136693											
ZFHX3	463	broad.mit.edu	37	chr16	72831707	72831707	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctccagcttggctgccCgggccttggtttgatgtaac	12	13	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72831707	A	A	72831707	3	1	165	1	0	0	0	0	1	0	0	0	17760	652	23	1	6245	1	ZFHX3	16	72831707	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	4744077	72831707	17523046	102	136694											
PRDM7	11105	broad.mit.edu	37	chr16	90128521	90128521	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggttgggatgccccttgtcCactgcactgtcctttacaaa	9	13	0	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90128521	T	T	90128521	2	4	165	1	0	0	0	0	0	0	0	1	12567	581	21	4		4	PRDM7	16	90128521	Silent	SNP	C	TCGA-50-5942-01A-21D-1753-08	17296814	90128521	226232	103	136695											
ITGAE	3682	broad.mit.edu	37	chr17	3664699	3664699	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgtccaatccttaccaAggtcgaagaagttggcctga	10	9	0	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3664699	T	T	3664699	3	4	165	1	0	0	0	0	1	0	0	0	7955	72	3	5	3216	5	ITGAE	17	3664699	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08		3664699	77530511	104	136696											
BCL6B	255877	broad.mit.edu	37	chr17	6927925	6927925	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtacaagtacatcgtgctaAactctcaggcctcccaagca	7	13	1	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6927925	T	T	6927925	3	4	165	1	0	0	0	0	1	0	0	0	1382	14	1	5	617	5	BCL6B	17	6927925	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	3263226	6927925	74267285	105	136697											
RARA	5914	broad.mit.edu	37	chr17	38510602	38510603	+	Missense_Mutation	DNP	TT	AC	AC													ccgagcaggacaccatgaccTtctcggacgggctgaccctg							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	38510603	AC	AC	38510602	3	1	165	1	0	0	0	0	1	0	0	0	13160	1609	56	5	1045	5	RARA	17	38510602	Missense_Mutation	DNP	TT	TCGA-50-5942-01A-21D-1753-08	31582677	38510602	42684608	106	136698											
KRT31	3881	broad.mit.edu	37	chr17	39552825	39552825	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagggacagctcggtctgGtacctgcgcaaggacagggt	16	11	1	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39552825	A	A	39552825	2	1	165	1	0	0	0	0	0	0	0	1	8538	1256	44	4		4	KRT31	17	39552825	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08	1042223	39552825	41642385	107	136699											
KRT16	3868	broad.mit.edu	37	chr17	39767654	39767654	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaggccttcgatctgcatCtccaggtcagtcctggccag	10	14	4	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39767654	G	G	39767654	3	3	165	1	0	0	0	0	1	0	0	0	8524	912	32	4	731	4	KRT16	17	39767654	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	214829	39767654	41427556	108	136700											
C17orf47	284083	broad.mit.edu	37	chr17	56620680	56620680	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagactcagggtctacccGtgcagaaactcggtgtacac	11	11	2	2	rs149389321		TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56620680	A	A	56620680	3	1	165	1	0	0	0	0	1	0	0	0	1874	1144	40	4	852	4	C17orf47	17	56620680	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	16853026	56620680	24574530	109	136701											
ANKRD30B	374860	broad.mit.edu	37	chr18	14809851	14809851	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacaaatacaataacccaaAagaccccaaaacctagtgta	3	11	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14809851	G	G	14809851	1	3	165	0	1	0	0	0	0	0	0	0	659	29	1	5		5	ANKRD30B	18	14809851	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08		14809851	63267397	110	136702											
DTNA	1837	broad.mit.edu	37	chr18	32459575	32459575	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacggactcagtttgaggAtcttgttccctcaccaacct	8	13	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32459575	G	G	32459575	3	3	165	1	0	0	0	0	1	0	0	0	4828	333	12	5	2137	5	DTNA	18	32459575	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	17649724	32459575	45617673	111	136703											
TCEB3B	51224	broad.mit.edu	37	chr18	44560673	44560673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatttcctgggtcccggccGtctagactgggcctcttctt	10	15	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44560673	T	T	44560673	3	4	165	1	0	0	0	0	1	0	0	0	15804	1136	40	3	1302	3	TCEB3B	18	44560673	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	12101098	44560673	33516575	112	136704											
FZR1	51343	broad.mit.edu	37	chr19	3533341	3533341	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccttgtctggaagtaccCctccctgacccaggtggcca	10	15	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3533341	T	T	3533341	3	4	165	1	0	0	0	0	1	0	0	0	6198	623	22	4	1334	4	FZR1	19	3533341	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08		3533341	55595642	113	136705											
PTPRS	5802	broad.mit.edu	37	chr19	5221159	5221159	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccgcccaggctgctgcCgcgattggtcagcacaaagt	14	13	1	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5221159	A	A	5221159	3	1	165	1	0	0	0	0	1	0	0	0	12919	652	23	1	2615	1	PTPRS	19	5221159	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	1687818	5221159	53907824	114	136706											
RFX2	5990	broad.mit.edu	37	chr19	6016244	6016244	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacttctggggagactcacAccttccgctgtttcataatt	8	11	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6016244	C	C	6016244	2	2	165	1	0	0	0	0	0	0	0	1	13371	146	6	5		5	RFX2	19	6016244	Silent	SNP	A	TCGA-50-5942-01A-21D-1753-08	795085	6016244	53112739	115	136707											
ACSBG2	81616	broad.mit.edu	37	chr19	6185606	6185606	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaggctggctacactcTggggatctgggccagctgga	16	9	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6185606	G	G	6185606	2	3	165	1	0	0	0	0	0	0	0	1	174	1567	55	5		5	ACSBG2	19	6185606	Silent	SNP	T	TCGA-50-5942-01A-21D-1753-08	169362	6185606	52943377	116	136708											
SAMD4B	55095	broad.mit.edu	37	chr19	39871152	39871152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacaacttggggttgttGgggaaggtgaggaaggggtg	19	4	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39871152	T	T	39871152	1	4	165	0	1	0	0	0	0	0	0	0	13933	1363	47	2		2	SAMD4B	19	39871152	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	33685546	39871152	19257831	117	136709											
C19orf47	126526	broad.mit.edu	37	chr19	40842259	40842259	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatcacggcataattgacGgcaggtcctggaggaatgcc	12	10	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40842259	A	A	40842259	2	1	165	1	0	0	0	0	0	0	0	1	1949	1131	39	4		4	C19orf47	19	40842259	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08	971107	40842259	18286724	118	136710											
BCAM	4059	broad.mit.edu	37	chr19	45316500	45316500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggccatgcccgtgtctGcctcagatcgccacctgcaa	10	17	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45316500	T	T	45316500	1	4	165	0	1	0	0	0	0	0	0	0	1349	1334	46	3		3	BCAM	19	45316500	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	4474241	45316500	13812483	119	136711											
CD3EAP	10849	broad.mit.edu	37	chr19	45911871	45911871	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgtgcggaagaagaagaaGaaaaaaaatcagcagctgaa	12	4	1	5			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45911871	T	T	45911871	3	4	165	1	0	0	0	0	1	0	0	0	3042	933	33	3	655	3	CD3EAP	19	45911871	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	595371	45911871	13217112	120	136712											
NLRP12	91662	broad.mit.edu	37	chr19	54312783	54312783	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacagagcaaaaaaaaaaaAaaaaaaaaaaaacacacgaa	3	6	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54312783	C	C	54312783	1	2	165	0	1	0	0	0	0	0	0	0	10569	29	1	5		5	NLRP12	19	54312783	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	8400912	54312783	4816200	121	136713											
PRPF31	26121	broad.mit.edu	37	chr19	54626962	54626962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtccgcttcgagggaggcGccgggccctaatgggattgg	17	10	0	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54626962	T	T	54626962	1	4	165	0	1	0	0	0	0	0	0	0	12672	1102	38	3		3	PRPF31	19	54626962	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	314179	54626962	4502021	122	136714											
NLRP7	199713	broad.mit.edu	37	chr19	55447693	55447693	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcagcatcatcgtgcGttcccactcgatgtgccctg	9	15	2	0	rs143673542		TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55447693	A	A	55447693	3	1	165	1	0	0	0	0	1	0	0	0	10577	1145	40	4	901	4	NLRP7	19	55447693	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	820731	55447693	3681290	123	136715											
C20orf26	26074	broad.mit.edu	37	chr20	20278871	20278871	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaaaatgggacttacttccGaattcatattaacaagtata	6	6	1	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20278871	C	C	20278871	3	2	165	1	0	0	0	0	1	0	0	0	2128	1058	37	4	3389	4	C20orf26	20	20278871	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08		20278871	42746649	124	136716											
PLK1S1	55857	broad.mit.edu	37	chr20	21142930	21142930	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagtctgctgaactcaAttccccgttacgggaaagat	8	10	2	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21142930	C	C	21142930	3	2	165	1	0	0	0	0	1	0	0	0	12190	101	4	5	842	5	PLK1S1	20	21142930	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	864059	21142930	41882590	125	136717											
TMEM90B	79953	broad.mit.edu	37	chr20	24565545	24565545	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttcctcatgatgcccccGcgggaccacctgggcctcag	10	16	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24565545	A	A	24565545	2	1	165	1	0	0	0	0	0	0	0	1	16342	1074	38	4		4	TMEM90B	20	24565545	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08	3422615	24565545	38459975	126	136718											
TTLL9	164395	broad.mit.edu	37	chr20	30496492	30496492	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcggatcagtcacttccGgaaccactatgaggtgagct	12	10	2	2	rs117415805	by1000genomes	TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30496492	A	A	30496492	3	1	165	1	0	0	0	0	1	0	0	0	16860	1116	39	4	319	4	TTLL9	20	30496492	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	5930947	30496492	32529028	127	136719											
ROMO1	140823	broad.mit.edu	37	chr20	34287492	34287492	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccacttcccagcctacCgcttccgtccccgcccgact	8	22	0	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34287492	A	A	34287492	1	1	165	0	1	0	0	0	0	0	0	0	13633	667	23	1		1	ROMO1	20	34287492	Intron	SNP	C	TCGA-50-5942-01A-21D-1753-08	3791000	34287492	28738028	128	136720											
RPN2	6185	broad.mit.edu	37	chr20	35864949	35864949	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggcatcattatgtttcAtttaattggatgtcatgaca	9	6	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35864949	C	C	35864949	1	2	165	0	1	0	0	0	0	0	0	0	13719	232	8	5		5	RPN2	20	35864949	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	1577457	35864949	27160571	129	136721											
BPI	671	broad.mit.edu	37	chr20	36946783	36946783	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatttttcactatgggaagAccttactgattacttgtttg	7	7	1	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36946783	G	G	36946783	1	3	165	0	1	0	0	0	0	0	0	0	1499	290	10	5		5	BPI	20	36946783	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08	1081834	36946783	26078737	130	136722											
ADA	100	broad.mit.edu	37	chr20	43249764	43249764	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcatctgtgttgagcgaGtagttagcctggtcattttt	13	6	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43249764	A	A	43249764	2	1	165	1	0	0	0	0	0	0	0	1	230	1024	36	4		4	ADA	20	43249764	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08	6302981	43249764	19775756	131	136723											
TPTE	7179	broad.mit.edu	37	chr21	10907111	10907111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacacagttgggtacccacGttagagctggaagaaacaaa	10	10	0	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10907111	A	A	10907111	1	1	165	0	1	0	0	0	0	0	0	0	16554	1160	40	4		4	TPTE	21	10907111	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08		10907111	37222784	132	136724											
SYAP1	94056	broad.mit.edu	37	chrX	16773014	16773014	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgtctgtctgctttttAttgattttcaattttgcctt	5	7	4	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16773014	T	T	16773014	1	4	165	0	1	0	0	0	0	0	0	0	15544	464	16	5		5	SYAP1	23	16773014	Intron	SNP	A	TCGA-50-5942-01A-21D-1753-08		16773014	138497546	133	136725											
FGD1	2245	broad.mit.edu	37	chrX	54497730	54497730	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggccacttctctgctctTttccaggaccacttaccctg	7	16	2	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54497730	A	A	54497730	1	1	165	0	1	0	0	0	0	0	0	0	5889	1856	64	5		5	FGD1	23	54497730	Intron	SNP	T	TCGA-50-5942-01A-21D-1753-08	37724716	54497730	100772830	134	136726											
PGAM4	441531	broad.mit.edu	37	chrX	77224418	77224418	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagcttctatggctttgcAcaccgtctcttcatccccca	5	17	3	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77224418	G	G	77224418	3	3	165	1	0	0	0	0	1	0	0	0	11870	159	6	5	50	5	PGAM4	23	77224418	Missense_Mutation	SNP	A	TCGA-50-5942-01A-21D-1753-08	22726688	77224418	78046142	135	136727											
ZNF711	7552	broad.mit.edu	37	chrX	84526181	84526181	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtattttcaggtgtgcagatCaatcaaatctgaaaactcac	7	8	5	2			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84526181	A	A	84526181	3	1	165	1	0	0	0	0	1	0	0	0	18244	827	29	3	1659	3	ZNF711	23	84526181	Missense_Mutation	SNP	C	TCGA-50-5942-01A-21D-1753-08	7301763	84526181	70744379	136	136728											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177044	89177044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttgtcctaactcagttGtctgtgattctcaatatagt	6	9	3	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177044	T	T	89177044	1	4	165	0	1	0	0	0	0	0	0	0	15950	1392	48	3		3	TGIF2LX	23	89177044	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	4650863	89177044	66093516	137	136729											
RPA4	29935	broad.mit.edu	37	chrX	96139775	96139775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacatgaacgagttcaccGtgcatattctggaaacggtc	11	9	2	1	rs139569203	byFrequency	TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96139775	A	A	96139775	3	1	165	1	0	0	0	0	1	0	0	0	13650	1145	40	4	468	4	RPA4	23	96139775	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	6962731	96139775	59130785	138	136730											
GPRASP2	114928	broad.mit.edu	37	chrX	101970221	101970221	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgaagcagtgtcacagGcagaaggagtgtcccagact	14	9	1	3			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101970221	T	T	101970221	3	4	165	1	0	0	0	0	1	0	0	0	6789	1203	42	3	426	3	GPRASP2	23	101970221	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	5830446	101970221	53300339	139	136731											
PLP1	5354	broad.mit.edu	37	chrX	103042910	103042910	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatggtgagttagggtacGggtgctttggctctcctacc	14	8	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103042910	A	A	103042910	1	1	165	0	1	0	0	0	0	0	0	0	12199	1131	39	4		4	PLP1	23	103042910	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	1072689	103042910	52227650	140	136732											
IL13RA1	3597	broad.mit.edu	37	chrX	117874953	117874954	+	Intron	INS	-	T	T													aaatactgttgataaattcaINStttttttttgtccttgattt							TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117874954	T	T	117874953	6	5	165	0	1	1	1	0	0	0	0	0	7699	232	8	0		0	IL13RA1	23	117874953	Intron	INS	-	TCGA-50-5942-01A-21D-1753-08	14832043	117874953	37395607	141	136733											
ZNF280C	55609	broad.mit.edu	37	chrX	129349244	129349244	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtggatgtatatagaaaaGtggcttgcaaaatcttttat	9	4	1	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129349244	C	C	129349244	3	2	165	1	0	0	0	0	1	0	0	0	17942	1020	36	4	331	4	ZNF280C	23	129349244	Missense_Mutation	SNP	G	TCGA-50-5942-01A-21D-1753-08	11474291	129349244	25921316	142	136734											
ZIC3	7547	broad.mit.edu	37	chrX	136648858	136648858	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacgtcccacccatgacgaTgctcctggacggaggcccgc	12	16	0	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136648858	A	A	136648858	3	1	165	1	0	0	0	0	1	0	0	0	17806	1464	51	5	10	5	ZIC3	23	136648858	Missense_Mutation	SNP	T	TCGA-50-5942-01A-21D-1753-08	7299614	136648858	18621702	143	136735											
MAGEC3	139081	broad.mit.edu	37	chrX	140985257	140985257	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggtcatctgggaagtGttgagtgcaataggggtgtg	19	3	2	1			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140985257	A	A	140985257	2	1	165	1	0	0	0	0	0	0	0	1	9274	1364	48	4		4	MAGEC3	23	140985257	Silent	SNP	G	TCGA-50-5942-01A-21D-1753-08	4336399	140985257	14285303	144	136736											
IDH3G	3421	broad.mit.edu	37	chrX	153055161	153055161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggcccctggccctggaGctcacccttcagggccacgc	11	19	2	0			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153055161	A	A	153055161	1	1	165	0	1	0	0	0	0	0	0	0	7568	986	34	4		4	IDH3G	23	153055161	Intron	SNP	G	TCGA-50-5942-01A-21D-1753-08	12069904	153055161	2215399	145	136737											
GNB1	2782	broad.mit.edu	37	chr1	1718768	1718768	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgcattacctactggCgttagttccagatcttgagg	11	10	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1718768	A	A	1718768	1	1	166	0	1	0	0	0	0	0	0	0	6579	783	27	3		3	GNB1	1	1718768	3'UTR	SNP	C	TCGA-50-5944-01A-11D-1753-08		1718768	247531853	1	136738											
CATSPER4	378807	broad.mit.edu	37	chr1	26528939	26528939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacggaggctgccatatcgGggggagtgggggattaacaa	17	6	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26528939	T	T	26528939	1	4	166	0	1	0	0	0	0	0	0	0	2716	1247	43	2		2	CATSPER4	1	26528939	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	24810171	26528939	222721682	2	136739											
PHACTR4	65979	broad.mit.edu	37	chr1	28817596	28817596	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttgattggaaatgaattCacagctgggcacagtggctt	11	6	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28817596	T	T	28817596	1	4	166	0	1	0	0	0	0	0	0	0	11907	841	29	4		4	PHACTR4	1	28817596	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	2288657	28817596	220433025	3	136740											
PUM1	9698	broad.mit.edu	37	chr1	31479805	31479805	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggagctctaagacagGcataaatcacagtacagatg	11	7	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31479805	A	A	31479805	1	1	166	0	1	0	0	0	0	0	0	0	12933	1218	42	4		4	PUM1	1	31479805	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	2662209	31479805	217770816	4	136741											
KANK4	163782	broad.mit.edu	37	chr1	62737210	62737210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattacctcctgcacggaagCcatagtctttctttttcatt	5	12	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62737210	A	A	62737210	3	1	166	1	0	0	0	0	1	0	0	0	8049	739	26	3	1063	3	KANK4	1	62737210	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	31257405	62737210	186513411	5	136742											
LRRIQ3	127255	broad.mit.edu	37	chr1	74507534	74507534	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attattcttcaatgaacctgAagtgtatatgggtagtttga	9	4	2	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74507534	G	G	74507534	3	3	166	1	0	0	0	0	1	0	0	0	9117	246	9	5	801	5	LRRIQ3	1	74507534	Missense_Mutation	SNP	A	TCGA-50-5944-01A-11D-1753-08	11770324	74507534	174743087	6	136743											
AK5	26289	broad.mit.edu	37	chr1	77951940	77951940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atataatatgagtaaaaccaGggcttcagtacagtttttct	7	6	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77951940	A	A	77951940	1	1	166	0	1	0	0	0	0	0	0	0	443	1015	35	4		4	AK5	1	77951940	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	3444406	77951940	171298681	7	136744											
SSX2IP	117178	broad.mit.edu	37	chr1	85115982	85115982	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacagacatgccacctttcCcttagcagtgcaactttagc	6	14	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85115982	T	T	85115982	1	4	166	0	1	0	0	0	0	0	0	0	15322	638	22	4		4	SSX2IP	1	85115982	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	7164042	85115982	164134639	8	136745											
DENND4B	9909	broad.mit.edu	37	chr1	153909237	153909237	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcatctcctaggtaggacaGgggacacatcagggtgagta	13	8	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153909237	C	C	153909237	1	2	166	0	1	0	0	0	0	0	0	0	4474	1015	35	4		4	DENND4B	1	153909237	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	68793255	153909237	95341384	9	136746											
SLC19A2	10560	broad.mit.edu	37	chr1	169438087	169438088	+	Intron	INS	-	A	A													acagcacctacagaacaaacINSaaaaaaaatccaattatttt							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169438088	A	A	169438087	6	5	166	0	1	1	1	0	0	0	0	0	14542	493	17	0		0	SLC19A2	1	169438087	Intron	INS	-	TCGA-50-5944-01A-11D-1753-08	15528850	169438087	79812534	10	136747											
TNN	63923	broad.mit.edu	37	chr1	175049279	175049279	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgctcaccctctctgcccTgttcctgttctgcctgcagt	7	17	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175049279	A	A	175049279	1	1	166	0	1	0	0	0	0	0	0	0	16446	1595	55	5		5	TNN	1	175049279	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	5611192	175049279	74201342	11	136748											
FAM5C	339479	broad.mit.edu	37	chr1	190067206	190067206	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaatttggcattaaacGcctgcagagcagattggatc	11	8	0	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067206	A	A	190067206	3	1	166	1	0	0	0	0	1	0	0	0	5645	1087	38	4	61	4	FAM5C	1	190067206	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	15017927	190067206	59183415	12	136749											
HHAT	55733	broad.mit.edu	37	chr1	210761218	210761218	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcagccctctgtatgtctCctaacagcctcttctttctc	7	15	5	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210761218	T	T	210761218	1	4	166	0	1	0	0	0	0	0	0	0	7156	870	30	4		4	HHAT	1	210761218	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	20694012	210761218	38489403	13	136750											
MARK1	4139	broad.mit.edu	37	chr1	220805674	220805674	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtaagtttttcaccttttCagattactgtgaattatttc	5	6	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220805674	A	A	220805674	1	1	166	0	1	0	0	0	0	0	0	0	9404	841	29	3		3	MARK1	1	220805674	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	10044456	220805674	28444947	14	136751											
TP53BP2	7159	broad.mit.edu	37	chr1	223983555	223983555	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggtgatttcaggcgggcGcatgctcaccgagtcttctc	12	14	4	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223983555	A	A	223983555	3	1	166	1	0	0	0	0	1	0	0	0	16508	1087	38	4	742	4	TP53BP2	1	223983555	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	3177881	223983555	25267066	15	136752											
TARBP1	6894	broad.mit.edu	37	chr1	234536884	234536884	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaggaagcatcaggatTaaagatacaatagagaattt	9	4	1	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234536884	C	C	234536884	1	2	166	0	1	0	0	0	0	0	0	0	15674	1769	61	5		5	TARBP1	1	234536884	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	10553329	234536884	14713737	16	136753											
NCOA1	8648	broad.mit.edu	37	chr2	24930566	24930566	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcttcaaagaaaaaagaaTcaaaagaccatcagctccta	5	9	3	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24930566	G	G	24930566	3	3	166	1	0	0	0	0	1	0	0	0	10323	1435	50	5	2261	5	NCOA1	2	24930566	Missense_Mutation	SNP	T	TCGA-50-5944-01A-11D-1753-08		24930566	218268807	17	136754											
XDH	7498	broad.mit.edu	37	chr2	31598368	31598368	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcgggaggcagatgcaGctcctctgccagtcctgcac	13	14	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31598368	A	A	31598368	2	1	166	1	0	0	0	0	0	0	0	1	17553	962	34	4		4	XDH	2	31598368	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	6667802	31598368	211601005	18	136755											
FER1L5	90342	broad.mit.edu	37	chr2	97361646	97361646	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccaaagcttccaagtacGgcccttcctccgtgcctttc	6	18	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97361646	A	A	97361646	1	1	166	0	1	0	0	0	0	0	0	0	5871	1131	39	4		4	FER1L5	2	97361646	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	65763278	97361646	145837727	19	136756											
XIRP2	129446	broad.mit.edu	37	chr2	168115032	168115032	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagtgctatggatcttaAtgacaacaataatgtgattg	9	4	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168115032	G	G	168115032	1	3	166	0	1	0	0	0	0	0	0	0	17557	101	4	5		5	XIRP2	2	168115032	3'UTR	SNP	A	TCGA-50-5944-01A-11D-1753-08	70753386	168115032	75084341	20	136757											
SLC25A12	8604	broad.mit.edu	37	chr2	172644412	172644412	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagccacctgcagtcttGtcttgatgacatcagcaggg	13	11	3	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172644412	A	A	172644412	3	1	166	1	0	0	0	0	1	0	0	0	14588	1377	48	4	417	4	SLC25A12	2	172644412	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	4529380	172644412	70554961	21	136758											
SLC25A12	8604	broad.mit.edu	37	chr2	172725074	172725074	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcaggtgatccgcccgccTcagccttccaaagcgctggg	11	17	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172725074	G	G	172725074	1	3	166	0	1	0	0	0	0	0	0	0	14588	1566	54	5		5	SLC25A12	2	172725074	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	80662	172725074	70474299	22	136759											
MYO1B	4430	broad.mit.edu	37	chr2	192225432	192225432	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgttctatcagctgctctCtggtgcctctgaagagctcc	10	12	4	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192225432	G	G	192225432	3	3	166	1	0	0	0	0	1	0	0	0	10163	913	32	4	664	4	MYO1B	2	192225432	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	19500358	192225432	50973941	23	136760											
CCNYL1	151195	broad.mit.edu	37	chr2	208605368	208605368	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttcttcaatgcatattcTtattttatagagatgcaaat	4	6	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	208605368	G	G	208605368	1	3	166	0	1	0	0	0	0	0	0	0	2967	1624	56	5		5	CCNYL1	2	208605368	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	16379936	208605368	34594005	24	136761											
GLB1L	79411	broad.mit.edu	37	chr2	220102885	220102885	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaacgtgaacaggcaggtgGgaaagtgtaaatatggggaa	15	4	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220102885	A	A	220102885	1	1	166	0	1	0	0	0	0	0	0	0	6492	1247	43	4		4	GLB1L	2	220102885	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	11497517	220102885	23096488	25	136762											
HDAC11	79885	broad.mit.edu	37	chr3	13542208	13542208	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaccgctctctgcccttcCgcagggggtggcttccacca	11	17	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13542208	T	T	13542208	1	4	166	0	1	0	0	0	0	0	0	0	7073	667	23	4		4	HDAC11	3	13542208	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08		13542208	184480222	26	136763											
FGD5	152273	broad.mit.edu	37	chr3	14862467	14862467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaccaagaagcccatcaCaaagagctctccctcactcc	4	18	4	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14862467	A	A	14862467	3	1	166	1	0	0	0	0	1	0	0	0	5893	478	17	3	1891	3	FGD5	3	14862467	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	1320259	14862467	183159963	27	136764											
PRKAR2A	5576	broad.mit.edu	37	chr3	48831587	48831587	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttattcactgttttcttttCttttttttttttttgagaca	3	5	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48831587	T	T	48831587	1	4	166	0	1	0	0	0	0	0	0	0	12611	928	32	4		4	PRKAR2A	3	48831587	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	33969120	48831587	149190843	28	136765											
CACNA2D3	55799	broad.mit.edu	37	chr3	54872835	54872835	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctgcacagttatttaaaAggttttttttttattattta	4	4	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54872835	G	G	54872835	1	3	166	0	1	0	0	0	0	0	0	0	2576	87	3	5		5	CACNA2D3	3	54872835	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08	6041248	54872835	143149595	29	136766											
ZBTB11	27107	broad.mit.edu	37	chr3	101378534	101378534	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacattttacaaatgagaGtgacttgagaatacatatcc	7	7	0	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101378534	A	A	101378534	1	1	166	0	1	0	0	0	0	0	0	0	17650	1044	36	4		4	ZBTB11	3	101378534	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	46505699	101378534	96643896	30	136767											
DPPA4	55211	broad.mit.edu	37	chr3	109049557	109049557	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaagagccacttcaggagGatgtgtctcagaactttgca	12	8	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109049557	A	A	109049557	3	1	166	1	0	0	0	0	1	0	0	0	4776	1174	41	4	433	4	DPPA4	3	109049557	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	7671023	109049557	88972873	31	136768											
EPHB1	2047	broad.mit.edu	37	chr3	134514403	134514403	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcggagagcgcagcggcGccctgggacgcggcgctctc	17	17	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134514403	T	T	134514403	1	4	166	0	1	0	0	0	0	0	0	0	5216	1102	38	3		3	EPHB1	3	134514403	5'UTR	SNP	G	TCGA-50-5944-01A-11D-1753-08	25464846	134514403	63508027	32	136769											
KPNA4	3840	broad.mit.edu	37	chr3	160286030	160286030	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggagccttctgcagcaGcacaagatggctgggagcaa	14	9	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160286030	T	T	160286030	1	4	166	0	1	0	0	0	0	0	0	0	8503	986	34	3		3	KPNA4	3	160286030	5'Flank	SNP	G	TCGA-50-5944-01A-11D-1753-08	25771627	160286030	37736400	33	136770											
TTC14	151613	broad.mit.edu	37	chr3	180320181	180320181	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgccgagccagcccggggCccgccgccccagcacccgtt	13	22	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180320181	T	T	180320181	2	4	166	1	0	0	0	0	0	0	0	1	16807	726	26	4		4	TTC14	3	180320181	Silent	SNP	C	TCGA-50-5944-01A-11D-1753-08	20034151	180320181	17702249	34	136771											
FXR1	8087	broad.mit.edu	37	chr3	180630550	180630550	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaccgttttgccactttgtcGagtgttctgggtgctggagc	14	9	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180630550	T	T	180630550	1	4	166	0	1	0	0	0	0	0	0	0	6175	1073	37	3		3	FXR1	3	180630550	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	310369	180630550	17391880	35	136772											
RGS12	6002	broad.mit.edu	37	chr4	3344679	3344679	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttagggctcaaaatttgggCggggaactggactcactcag	13	8	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3344679	T	T	3344679	3	4	166	1	0	0	0	0	1	0	0	0	13404	759	27	4	1903	4	RGS12	4	3344679	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08		3344679	187809597	36	136773											
C1QTNF7	114905	broad.mit.edu	37	chr4	15444073	15444073	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttaacaaggtcctcttcaacGagggagagcactacaaccct	8	12	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15444073	C	C	15444073	3	2	166	1	0	0	0	0	1	0	0	0	1988	1059	37	4	551	4	C1QTNF7	4	15444073	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	12099394	15444073	175710203	37	136774											
TECRL	253017	broad.mit.edu	37	chr4	65146797	65146797	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgactgtgaaactaatccatGatccaatctgttatattaaa	5	7	1	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65146797	T	T	65146797	4	4	166	1	0	0	0	0	0	1	0	0	15868	1294	45	3	173	3	TECRL	4	65146797	Nonsense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	49702724	65146797	126007479	38	136775											
WDFY3	23001	broad.mit.edu	37	chr4	85781638	85781638	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtgccggggaggatggCacaactccgtgaagagccgg	16	10	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85781638	T	T	85781638	3	4	166	1	0	0	0	0	1	0	0	0	17397	710	25	4	10776	4	WDFY3	4	85781638	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	20634841	85781638	105372638	39	136776											
NUDT9	53343	broad.mit.edu	37	chr4	88343913	88343925	+	5'UTR	DEL	GCTACTCCCGTTC	-	-													gtgatttatagataggcacaGctactcccgttcgggaaccc					rs113013798		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88343925	-	-	88343913	6	5	166	0	1	1	0	1	0	0	0	0	10841	986	34	0		0	NUDT9	4	88343913	5'UTR	DEL	GCTACTCCCGTTC	TCGA-50-5944-01A-11D-1753-08	2562275	88343913	102810363	40	136777											
NAP1L5	266812	broad.mit.edu	37	chr4	89618409	89618409	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcatcgtcatgtttggccCccgcggcagcctctgccgca	13	16	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89618409	T	T	89618409	3	4	166	1	0	0	0	0	1	0	0	0	10254	623	22	4	55	4	NAP1L5	4	89618409	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	1274496	89618409	101535867	41	136778											
TNIP3	79931	broad.mit.edu	37	chr4	122063984	122063984	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaagttaaaatcattaatTcccaagccactcttgaccta	4	11	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122063984	C	C	122063984	1	2	166	0	1	0	0	0	0	0	0	0	16439	1798	62	5		5	TNIP3	4	122063984	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	32445575	122063984	69090292	42	136779											
PCDH18	54510	broad.mit.edu	37	chr4	138453153	138453153	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctcataaatcctgtatttCaaattcttgcccagtacatc	3	12	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138453153	G	G	138453153	3	3	166	1	0	0	0	0	1	0	0	0	11607	825	29	4	3333	4	PCDH18	4	138453153	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	16389169	138453153	52701123	43	136780											
LRBA	987	broad.mit.edu	37	chr4	151388763	151388763	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttaagtaaaataacgaaaGacaatccaatttatttttat	4	4	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151388763	C	C	151388763	1	2	166	0	1	0	0	0	0	0	0	0	9018	957	33	4		4	LRBA	4	151388763	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	12935610	151388763	39765513	44	136781											
C5orf38	153571	broad.mit.edu	37	chr5	2753492	2753492	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcgcggtccaggcacgttAcccctcccgccaggagctcc	12	18	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2753492	C	C	2753492	1	2	166	0	1	0	0	0	0	0	0	0	2319	406	14	5		5	C5orf38	5	2753492	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08		2753492	178161768	45	136782											
ZNF622	90441	broad.mit.edu	37	chr5	16465785	16465785	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgtcgccattgccaggcgaGaaataagaaccgaccaagcc	10	13	0	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16465785	C	C	16465785	1	2	166	0	1	0	0	0	0	0	0	0	18173	957	33	4		4	ZNF622	5	16465785	5'UTR	SNP	G	TCGA-50-5944-01A-11D-1753-08	13712293	16465785	164449475	46	136783											
C5orf51	285636	broad.mit.edu	37	chr5	41904478	41904478	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgattgtggccatggcggcCgcagtctctagtgtggtgag	16	10	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41904478	G	G	41904478	2	3	166	1	0	0	0	0	0	0	0	1	2331	639	23	4		4	C5orf51	5	41904478	Silent	SNP	C	TCGA-50-5944-01A-11D-1753-08	25438693	41904478	139010782	47	136784											
ITGA2	3673	broad.mit.edu	37	chr5	52360756	52360756	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagggcattttgggtcaGcaccaatttcttgaaggccc	11	10	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52360756	A	A	52360756	2	1	166	1	0	0	0	0	0	0	0	1	7945	962	34	4		4	ITGA2	5	52360756	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	10456278	52360756	128554504	48	136785											
PIK3R1	5295	broad.mit.edu	37	chr5	67584451	67584451	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacacgagcactgcctgccGggaacaggctggggggaggt	19	10	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67584451	A	A	67584451	1	1	166	0	1	0	0	0	0	0	0	0	12013	1131	39	4		4	PIK3R1	5	67584451	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	15223695	67584451	113330809	49	136786											
GPR98	84059	broad.mit.edu	37	chr5	90125039	90125039	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatattcatacacgttatgGttttcttctttaactacagc	4	8	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90125039	A	A	90125039	1	1	166	0	1	0	0	0	0	0	0	0	6787	1276	44	4		4	GPR98	5	90125039	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	22540588	90125039	90790221	50	136787											
RIOK2	55781	broad.mit.edu	37	chr5	96503628	96503628	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctaatggatgaagcagttCatcatctgcctgcatttcct	7	11	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96503628	G	G	96503628	3	3	166	1	0	0	0	0	1	0	0	0	13489	835	29	4	758	4	RIOK2	5	96503628	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	6378589	96503628	84411632	51	136788											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730641	140730641	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggatgagggcattaatGcagagatcacctatgccttc	10	10	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140730641	A	A	140730641	3	1	166	1	0	0	0	0	1	0	0	0	11656	1319	46	4	816	4	PCDHGB1	5	140730641	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	44227013	140730641	40184619	52	136789											
PDE6A	5145	broad.mit.edu	37	chr5	149311640	149311640	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattgaatacacgaccatttCtcttttagcacgttctttgt	5	9	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149311640	G	G	149311640	1	3	166	0	1	0	0	0	0	0	0	0	11739	928	32	4		4	PDE6A	5	149311640	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	8580999	149311640	31603620	53	136790											
ODZ2	57451	broad.mit.edu	37	chr5	167551958	167551958	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactgtgagctggcgagggtCcagtgcccagaccagtgcag	15	11	0	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167551958	A	A	167551958	2	1	166	1	0	0	0	0	0	0	0	1	10930	842	30	3		3	ODZ2	5	167551958	Silent	SNP	C	TCGA-50-5944-01A-11D-1753-08	18240318	167551958	13363302	54	136791											
WWC1	23286	broad.mit.edu	37	chr5	167855884	167855884	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatttaccttcacagccGcccagggtggaaggcagcac	11	14	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167855884	A	A	167855884	1	1	166	0	1	0	0	0	0	0	0	0	17538	1102	38	4		4	WWC1	5	167855884	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	303926	167855884	13059376	55	136792											
WWC1	23286	broad.mit.edu	37	chr5	167882278	167882278	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaggtgaggtgacaggaggGaagaggagcagctgagtggt	20	3	0	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167882278	A	A	167882278	1	1	166	0	1	0	0	0	0	0	0	0	17538	1189	41	4		4	WWC1	5	167882278	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	26394	167882278	13032982	56	136793											
KCNIP1	30820	broad.mit.edu	37	chr5	169812504	169812504	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagaagcaaacagaagtgaGatcagcccagttcacaggtg	11	9	2	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169812504	C	C	169812504	1	2	166	0	1	0	0	0	0	0	0	0	8109	957	33	4		4	KCNIP1	5	169812504	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	1930226	169812504	11102756	57	136794											
NOP16	51491	broad.mit.edu	37	chr5	175811464	175811464	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaggcaagccacttgctatCtatccctgaggtccagaatc	8	12	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175811464	G	G	175811464	1	3	166	0	1	0	0	0	0	0	0	0	10632	928	32	4		4	NOP16	5	175811464	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	5998960	175811464	5103796	58	136795											
NOP16	51491	broad.mit.edu	37	chr5	175812191	175812191	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatggtccagggcgccttcCcagccagcccacggggcctg	14	16	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175812191	G	G	175812191	1	3	166	0	1	0	0	0	0	0	0	0	10632	638	22	4		4	NOP16	5	175812191	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	727	175812191	5103069	59	136796											
NOP16	51491	broad.mit.edu	37	chr5	175813814	175813814	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagtgcaggacagtgacCtaaaggaatatatggaccac	10	10	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175813814	T	T	175813814	1	4	166	0	1	0	0	0	0	0	0	0	10632	696	24	4		4	NOP16	5	175813814	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	1623	175813814	5101446	60	136797											
CDHR2	54825	broad.mit.edu	37	chr5	175992422	175992422	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggtaggtgtctcccctcCccagccacgcagccctaacc	8	19	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175992422	T	T	175992422	1	4	166	0	1	0	0	0	0	0	0	0	3149	638	22	4		4	CDHR2	5	175992422	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	178608	175992422	4922838	61	136798											
GFPT2	9945	broad.mit.edu	37	chr5	179743881	179743882	+	Intron	INS	-	CTGT	CTGT													ctgcagggcacacgacaaggINScgttaatgctgagtctacac							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTGT	179743882	CTGT	CTGT	179743881	6	5	166	0	1	1	1	0	0	0	0	0	6410	1218	42	0		0	GFPT2	5	179743881	Intron	INS	-	TCGA-50-5944-01A-11D-1753-08	3751459	179743881	1171379	62	136799											
PAK1IP1	55003	broad.mit.edu	37	chr6	10702848	10702849	+	Missense_Mutation	DNP	CG	AT	AT													atctggcaagttggccctgtCggttggtacagataaaactt					rs114979482	byFrequency;by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	10702849	AT	AT	10702848	3	1	166	1	0	0	0	0	1	0	0	0	11494	893	31	3	433	3	PAK1IP1	6	10702848	Missense_Mutation	DNP	CG	TCGA-50-5944-01A-11D-1753-08		10702848	160412219	63	136800											
HIST1H3F	8968	broad.mit.edu	37	chr6	26250719	26250719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggcctgtagcggtgggGcttcttcacgccaccggtgg	15	13	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26250719	T	T	26250719	3	4	166	1	0	0	0	0	1	0	0	0	7227	1203	42	3	299	3	HIST1H3F	6	26250719	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	15547871	26250719	144864348	64	136801											
MOG	4340	broad.mit.edu	37	chr6	29638806	29638806	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccattccacagcaactgCccagtgcctcacctctcaga	6	18	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29638806	T	T	29638806	1	4	166	0	1	0	0	0	0	0	0	0	9787	754	26	4		4	MOG	6	29638806	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	3388087	29638806	141476261	65	136802											
BAT1	7919	broad.mit.edu	37	chr6	31508296	31508296	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagagctcattgtccacaTcgttctctgccataactggg	8	13	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31508296	G	G	31508296	3	3	166	1	0	0	0	0	1	0	0	0	1323	1435	50	5	1312	5	BAT1	6	31508296	Missense_Mutation	SNP	T	TCGA-50-5944-01A-11D-1753-08	1869490	31508296	139606771	66	136803											
BAT5	7920	broad.mit.edu	37	chr6	31669840	31669840	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagtcccagatgccagGgtagacataccagtgccagg	13	11	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31669840	C	C	31669840	1	2	166	0	1	0	0	0	0	0	0	0	1329	1247	43	4		4	BAT5	6	31669840	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	161544	31669840	139445227	67	136804											
BTNL2	56244	broad.mit.edu	37	chr6	32362585	32362585	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgatggaacaagtgacGtccacagcggagatgtttgt	13	7	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32362585	A	A	32362585	2	1	166	1	0	0	0	0	0	0	0	1	1575	1136	40	4		4	BTNL2	6	32362585	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	692745	32362585	138752482	68	136805											
SUPT3H	8464	broad.mit.edu	37	chr6	44988380	44988380	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgctgtaactaacaataaTgaaaatttagaaatttttct	4	5	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44988380	A	A	44988380	1	1	166	0	1	0	0	0	0	0	0	0	15515	1479	51	5		5	SUPT3H	6	44988380	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	12625795	44988380	126126687	69	136806											
GSTA1	2938	broad.mit.edu	37	chr6	52657545	52657545	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttggagaccttggggcacTgaaggcctggagaagactgg	16	7	0	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52657545	A	A	52657545	1	1	166	0	1	0	0	0	0	0	0	0	6896	1595	55	5		5	GSTA1	6	52657545	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	7669165	52657545	118457522	70	136807											
PRIM2	5558	broad.mit.edu	37	chr6	57372258	57372258	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcggtgttcggcctttgctGtttttactaattttcttccc	7	10	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57372258	A	A	57372258	1	1	166	0	1	0	0	0	0	0	0	0	12597	1392	48	4		4	PRIM2	6	57372258	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	4714713	57372258	113742809	71	136808											
RIMS1	22999	broad.mit.edu	37	chr6	72806907	72806907	+	Intron	DEL	A	-	-													ggggcgttgtgaatgtggatAaaaactattacgccttccaa							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72806907	-	-	72806907	6	5	166	0	1	1	0	1	0	0	0	0	13478	377	13	0		0	RIMS1	6	72806907	Intron	DEL	A	TCGA-50-5944-01A-11D-1753-08	15434649	72806907	98308160	72	136809											
MOXD1	26002	broad.mit.edu	37	chr6	132649115	132649115	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaggtacaaaactttttatAaaaatcataggtaaaacata	4	5	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132649115	T	T	132649115	1	4	166	0	1	0	0	0	0	0	0	0	9814	377	13	5		5	MOXD1	6	132649115	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08	59842208	132649115	38465952	73	136810											
ZC3H12D	340152	broad.mit.edu	37	chr6	149778067	149778067	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgacggagacgcgggtgaGggcccaagggcaccgcccct	18	14	0	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149778067	A	A	149778067	1	1	166	0	1	0	0	0	0	0	0	0	17690	1015	35	4		4	ZC3H12D	6	149778067	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	17128952	149778067	21337000	74	136811											
PLEKHG1	57480	broad.mit.edu	37	chr6	151142342	151142342	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcccagaaccttcctcaCggtcacataaagttttgaag	7	12	3	2	rs140780640	byFrequency;by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151142342	T	T	151142342	3	4	166	1	0	0	0	0	1	0	0	0	12163	527	19	4	1466	4	PLEKHG1	6	151142342	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	1364275	151142342	19972725	75	136812											
SYNE1	23345	broad.mit.edu	37	chr6	152671318	152671318	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaccttgtggtgggccaaTtgctgggtgattgtctccag	15	8	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152671318	C	C	152671318	2	2	166	1	0	0	0	0	0	0	0	1	15564	1490	52	5		5	SYNE1	6	152671318	Silent	SNP	T	TCGA-50-5944-01A-11D-1753-08	1528976	152671318	18443749	76	136813											
HDAC9	9734	broad.mit.edu	37	chr7	18875236	18875236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatttctttagagccccaCttttatttgtatctttcagg	5	8	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18875236	A	A	18875236	1	1	166	0	1	0	0	0	0	0	0	0	7081	564	20	3		3	HDAC9	7	18875236	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08		18875236	140263427	77	136814											
HOXA13	3209	broad.mit.edu	37	chr7	27238157	27238157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacccgccttgcagcgcccGgctgctctttgccacccgct	9	21	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27238157	A	A	27238157	1	1	166	0	1	0	0	0	0	0	0	0	7358	1131	39	4		4	HOXA13	7	27238157	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	8362921	27238157	131900506	78	136815											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	166	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-50-5944-01A-11D-1753-08	28021358	55259515	103879148	79	136816											
WBSCR17	64409	broad.mit.edu	37	chr7	71175812	71175812	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaccaccacactcctccctGacacccgctgcctggtggac	9	19	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71175812	A	A	71175812	3	1	166	1	0	0	0	0	1	0	0	0	17391	1290	45	4	1605	4	WBSCR17	7	71175812	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	15916297	71175812	87962851	80	136817											
HGF	3082	broad.mit.edu	37	chr7	81335569	81335569	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccaacaattcttgtccaGgtgaaaaatacaaaatcttc	5	10	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81335569	T	T	81335569	1	4	166	0	1	0	0	0	0	0	0	0	7152	1015	35	2		2	HGF	7	81335569	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	10159757	81335569	77803094	81	136818											
HEPACAM2	253012	broad.mit.edu	37	chr7	92838013	92838013	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcagatgcaacttctaagcGaggcccatgcttaatgatat	8	10	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92838013	A	A	92838013	3	1	166	1	0	0	0	0	1	0	0	0	7120	1058	37	4	524	4	HEPACAM2	7	92838013	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	11502444	92838013	66300650	82	136819											
PSMC2	5701	broad.mit.edu	37	chr7	103006539	103006539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagggggctcgaatggttcGtgaactctttgaaatggcca	13	7	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103006539	A	A	103006539	3	1	166	1	0	0	0	0	1	0	0	0	12792	1145	40	4	807	4	PSMC2	7	103006539	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	10168526	103006539	56132124	83	136820											
PNPLA8	50640	broad.mit.edu	37	chr7	108150995	108150995	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcccaaaggtccgaaagGtgttgcagcttcttcgcctt	11	11	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108150995	A	A	108150995	1	1	166	0	1	0	0	0	0	0	0	0	12266	1276	44	4		4	PNPLA8	7	108150995	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	5144456	108150995	50987668	84	136821											
MKLN1	4289	broad.mit.edu	37	chr7	131113849	131113849	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcttgctgacttctgggCgtacagtgtgaaggagaacc	13	8	2	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131113849	T	T	131113849	3	4	166	1	0	0	0	0	1	0	0	0	9696	768	27	4	972	4	MKLN1	7	131113849	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	22962854	131113849	28024814	85	136822											
MGAM	8972	broad.mit.edu	37	chr7	141785659	141785659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtactcagacatcgactaCatggagcggcagctggactt	11	11	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141785659	A	A	141785659	1	1	166	0	1	0	0	0	0	0	0	0	9634	493	17	3		3	MGAM	7	141785659	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	10671810	141785659	17353004	86	136823											
KEL	3792	broad.mit.edu	37	chr7	142659398	142659398	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccccagttccttgatcctGgagaaggggcacttctgctg	12	13	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142659398	A	A	142659398	1	1	166	0	1	0	0	0	0	0	0	0	8212	1363	47	4		4	KEL	7	142659398	5'UTR	SNP	G	TCGA-50-5944-01A-11D-1753-08	873739	142659398	16479265	87	136824											
CNTNAP2	26047	broad.mit.edu	37	chr7	147964316	147964316	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtaaatttctcttactgGggccagtcacgaatatcttc	8	10	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147964316	A	A	147964316	1	1	166	0	1	0	0	0	0	0	0	0	3679	1247	43	4		4	CNTNAP2	7	147964316	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	5304918	147964316	11174347	88	136825											
INSIG1	3638	broad.mit.edu	37	chr7	155094563	155094563	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacagttagctatggtaagtGaaatgatcatattatcttct	8	5	3	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155094563	A	A	155094563	1	1	166	0	1	0	0	0	0	0	0	0	7835	1305	45	4		4	INSIG1	7	155094563	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	7130247	155094563	4044100	89	136826											
CSMD1	64478	broad.mit.edu	37	chr8	3226892	3226892	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtagcctccacatagaGcttaaaataataaagagaga	9	6	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3226892	C	C	3226892	3	2	166	1	0	0	0	0	1	0	0	0	3978	985	34	4	8119	4	CSMD1	8	3226892	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08		3226892	143137130	90	136827											
FDFT1	2222	broad.mit.edu	37	chr8	11683576	11683576	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcggaattggcctttcccGtcttttctcagcctcagagt	10	12	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11683576	A	A	11683576	3	1	166	1	0	0	0	0	1	0	0	0	5859	1145	40	4	572	4	FDFT1	8	11683576	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	8456684	11683576	134680446	91	136828											
CA1	759	broad.mit.edu	37	chr8	86245699	86245699	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccttatttccttctattttGaggtctaattggtaagacag	8	7	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86245699	A	A	86245699	1	1	166	0	1	0	0	0	0	0	0	0	2536	1305	45	4		4	CA1	8	86245699	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	74562123	86245699	60118323	92	136829											
PTDSS1	9791	broad.mit.edu	37	chr8	97321848	97321848	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacacaatgctgggtgttTgggtgagtaatctgttattg	14	4	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97321848	C	C	97321848	2	2	166	1	0	0	0	0	0	0	0	1	12842	1809	63	5		5	PTDSS1	8	97321848	Silent	SNP	T	TCGA-50-5944-01A-11D-1753-08	11076149	97321848	49042174	93	136830											
CSMD3	114788	broad.mit.edu	37	chr8	113564858	113564858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctacctcaatcatccaCatgcaacgcaggttattgtc	7	12	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113564858	A	A	113564858	3	1	166	1	0	0	0	0	1	0	0	0	3980	478	17	3	6981	3	CSMD3	8	113564858	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	16243010	113564858	32799164	94	136831											
TSTA3	7264	broad.mit.edu	37	chr8	144696688	144696688	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccccaggctgccgctgGcctcttactgaggctggcac	11	18	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144696688	A	A	144696688	1	1	166	0	1	0	0	0	0	0	0	0	16799	1218	42	4		4	TSTA3	8	144696688	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	31131830	144696688	1667334	95	136832											
ZNF707	286075	broad.mit.edu	37	chr8	144772152	144772152	+	Intron	DEL	G	-	-													ttccccgtgatttgctgagtGggggggctcctggggtcagg					rs35228840		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144772152	-	-	144772152	6	5	166	0	1	1	0	1	0	0	0	0	18239	1363	47	0		0	ZNF707	8	144772152	Intron	DEL	G	TCGA-50-5944-01A-11D-1753-08	75464	144772152	1591870	96	136833											
ACER2	340485	broad.mit.edu	37	chr9	19424530	19424530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttctttctagactggaGgcatgcatgcttgggtggtg	13	7	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19424530	T	T	19424530	1	4	166	0	1	0	0	0	0	0	0	0	139	1015	35	2		2	ACER2	9	19424530	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08		19424530	121788901	97	136834											
UNC13B	10497	broad.mit.edu	37	chr9	35366901	35366901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagattacaggcaatctccCatctttcccaggatctaact	5	13	4	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35366901	T	T	35366901	1	4	166	0	1	0	0	0	0	0	0	0	17111	609	21	4		4	UNC13B	9	35366901	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	15942371	35366901	105846530	98	136835											
RABGAP1	23637	broad.mit.edu	37	chr9	125836554	125836554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccagaactaattggtttGctatttcaggaatacattcc	7	9	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125836554	T	T	125836554	1	4	166	0	1	0	0	0	0	0	0	0	13072	1334	46	3		3	RABGAP1	9	125836554	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	90469653	125836554	15376877	99	136836											
TRUB2	26995	broad.mit.edu	37	chr9	131071839	131071839	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggcattcactgccccGcacccctctccagccccaag	8	21	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131071839	A	A	131071839	3	1	166	1	0	0	0	0	1	0	0	0	16728	1087	38	4	13	4	TRUB2	9	131071839	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	5235285	131071839	10141592	100	136837											
SFMBT2	57713	broad.mit.edu	37	chr10	7214659	7214659	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaacttttgaaggctaTacacacacacagacatgaac	7	9	0	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7214659	A	A	7214659	1	1	166	0	1	0	0	0	0	0	0	0	14271	1421	49	5		5	SFMBT2	10	7214659	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08		7214659	128320088	101	136838											
SFTPA1	653509	broad.mit.edu	37	chr10	81373378	81373379	+	Intron	DEL	AG	-	-													ggaagaggaagagaagacacAgagagaggcagagatggaga							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81373379	-	-	81373378	6	5	166	0	1	1	0	1	0	0	0	0	14302	203	7	0		0	SFTPA1	10	81373378	Intron	DEL	AG	TCGA-50-5944-01A-11D-1753-08	74158719	81373378	54161369	102	136839											
C10orf99	387695	broad.mit.edu	37	chr10	85944358	85944358	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaacttaattgtgttttcCtctctctccccacaacctgg	5	14	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85944358	T	T	85944358	1	4	166	0	1	0	0	0	0	0	0	0	1639	696	24	4		4	C10orf99	10	85944358	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	4570980	85944358	49590389	103	136840											
COL17A1	1308	broad.mit.edu	37	chr10	105800830	105800830	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctgacattacctgagttGgacaggaacgatcctggtgg	12	10	0	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105800830	A	A	105800830	2	1	166	1	0	0	0	0	0	0	0	1	3706	1335	47	4		4	COL17A1	10	105800830	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	19856472	105800830	29733917	104	136841											
API5	8539	broad.mit.edu	37	chr11	43340417	43340417	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtatgtggctgatacaattgGagtagcaatctgatatatca	10	5	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43340417	C	C	43340417	1	2	166	0	1	0	0	0	0	0	0	0	775	1189	41	4		4	API5	11	43340417	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08		43340417	91666099	105	136842											
OR4P4	81300	broad.mit.edu	37	chr11	55405809	55405809	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attatgtcatttcaggtgacTtatatgttctatctacactg	6	7	4	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55405809	A	A	55405809	1	1	166	0	1	0	0	0	0	0	0	0	11174	1624	56	5		5	OR4P4	11	55405809	5'Flank	SNP	T	TCGA-50-5944-01A-11D-1753-08	12065392	55405809	79600707	106	136843											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57069779	57069779	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtagctgaccaggagctgGacccctcctgcagccggagc	13	15	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57069779	T	T	57069779	1	4	166	0	1	0	0	0	0	0	0	0	16443	1189	41	3		3	TNKS1BP1	11	57069779	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	1663970	57069779	77936737	107	136844											
GLYATL1	92292	broad.mit.edu	37	chr11	58723213	58723213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatagaagacctgccagcaGcctgtatgctcggcccagag	12	13	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58723213	T	T	58723213	3	4	166	1	0	0	0	0	1	0	0	0	6544	971	34	3	741	3	GLYATL1	11	58723213	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	1653434	58723213	76283303	108	136845											
OR4D9	390199	broad.mit.edu	37	chr11	59283060	59283060	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acggtcatcttgatgatgctGaggtctcacactggggaagg	14	8	3	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59283060	A	A	59283060	2	1	166	1	0	0	0	0	0	0	0	1	11153	1277	45	4		4	OR4D9	11	59283060	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	559847	59283060	75723456	109	136846											
TMEM132A	54972	broad.mit.edu	37	chr11	60695271	60695271	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtctggcagcctgccCtgtgcccggctccatgccac	12	18	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60695271	T	T	60695271	2	4	166	1	0	0	0	0	0	0	0	1	16168	668	24	4		4	TMEM132A	11	60695271	Silent	SNP	C	TCGA-50-5944-01A-11D-1753-08	1412211	60695271	74311245	110	136847											
C11orf9	745	broad.mit.edu	37	chr11	61539415	61539415	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccctgtacgatgctaactAcaaggagctgtgagtgccct	11	11	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61539415	G	G	61539415	3	3	166	1	0	0	0	0	1	0	0	0	1683	391	14	5	1155	5	C11orf9	11	61539415	Missense_Mutation	SNP	A	TCGA-50-5944-01A-11D-1753-08	844144	61539415	73467101	111	136848											
FRMD8	83786	broad.mit.edu	37	chr11	65172387	65172387	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcgaactgagccaggcggCggagcccgcaggcccccagg	15	16	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65172387	T	T	65172387	3	4	166	1	0	0	0	0	1	0	0	0	6116	768	27	4	1158	4	FRMD8	11	65172387	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	3632972	65172387	69834129	112	136849											
SAPS3	55291	broad.mit.edu	37	chr11	68337296	68337296	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcactgattcttgcaagtccTtttgaaaacacagaaaatgc	7	9	1	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68337296	C	C	68337296	2	2	166	1	0	0	0	0	0	0	0	1	13950	1596	56	5		5	SAPS3	11	68337296	Silent	SNP	T	TCGA-50-5944-01A-11D-1753-08	3164909	68337296	66669220	113	136850											
PDE2A	5138	broad.mit.edu	37	chr11	72296591	72296591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcagagagaacagtgCactcacccaggtgggtgaag	15	10	1	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72296591	A	A	72296591	1	1	166	0	1	0	0	0	0	0	0	0	11730	725	25	3		3	PDE2A	11	72296591	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	3959295	72296591	62709925	114	136851											
MMP27	64066	broad.mit.edu	37	chr11	102565710	102565710	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggttacctttaaaaaccaGaatcttatctctggggttct	7	9	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102565710	A	A	102565710	2	1	166	1	0	0	0	0	0	0	0	1	9758	933	33	4		4	MMP27	11	102565710	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	30269119	102565710	32440806	115	136852			1	106		3	3	92	G		1.883676e-07
MMP27	64066	broad.mit.edu	37	chr11	102565768	102565768	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagctggcagagatggccaGaatgaagcaattaattcaaa	10	7	2	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102565768	C	C	102565768	3	2	166	1	0	0	0	0	1	0	0	0	9758	933	33	4	594	4	MMP27	11	102565768	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	58	102565768	32440748	116	136853			1	106		3	3	92	G		1.883676e-07
MMP27	64066	broad.mit.edu	37	chr11	102565801	102565801	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattcaaactcaacatccgtGatatcataatagatcctcca	3	11	3	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102565801	A	A	102565801	2	1	166	1	0	0	0	0	0	0	0	1	9758	1280	45	4		4	MMP27	11	102565801	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	33	102565801	32440715	117	136854			1	106		3	3	92	G		1.883676e-07
MMP12	4321	broad.mit.edu	37	chr11	102743681	102743681	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggactccacatcgaggtgcGtgcatcatctccagggtaga	13	11	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102743681	A	A	102743681	2	1	166	1	0	0	0	0	0	0	0	1	9744	1136	40	4		4	MMP12	11	102743681	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	177880	102743681	32262835	118	136855											
C11orf63	79864	broad.mit.edu	37	chr11	122775840	122775840	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acattagtctctttatttgtAaaattgggacagtaataaat	6	4	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122775840	G	G	122775840	1	3	166	0	1	0	0	0	0	0	0	0	1666	377	13	5		5	C11orf63	11	122775840	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08	20032159	122775840	12230676	119	136856											
PLCZ1	89869	broad.mit.edu	37	chr12	18865975	18865975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaccattaaaaatatataCcaaagtattaaaatattcca	3	6	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18865975	A	A	18865975	1	1	166	0	1	0	0	0	0	0	0	0	12139	522	18	3		3	PLCZ1	12	18865975	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08		18865975	114985920	120	136857											
SLCO1B1	10599	broad.mit.edu	37	chr12	21355464	21355464	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcaagtggaatgttttTaggaggatatatcattaaaa	9	2	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21355464	C	C	21355464	3	2	166	1	0	0	0	0	1	0	0	0	14837	1764	61	5	1209	5	SLCO1B1	12	21355464	Missense_Mutation	SNP	T	TCGA-50-5944-01A-11D-1753-08	2489489	21355464	112496431	121	136858											
KIAA0528	9847	broad.mit.edu	37	chr12	22697149	22697149	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacgagtctgcgccgagcgcGgggccggcgggagaggggcg	22	11	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22697149	C	C	22697149	1	2	166	0	1	0	0	0	0	0	0	0	8252	1131	39	4		4	KIAA0528	12	22697149	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	1341685	22697149	111154746	122	136859											
BICD1	636	broad.mit.edu	37	chr12	32491707	32491707	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctatatgtatttttcttgGatctcctgcaagacaatttt	5	8	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32491707	T	T	32491707	1	4	166	0	1	0	0	0	0	0	0	0	1434	1189	41	3		3	BICD1	12	32491707	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	9794558	32491707	101360188	123	136860											
ADAMTS20	80070	broad.mit.edu	37	chr12	43833626	43833626	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatcattttatatttgatAatgttaagcacttaaccagt	5	6	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43833626	G	G	43833626	1	3	166	0	1	0	0	0	0	0	0	0	266	377	13	5		5	ADAMTS20	12	43833626	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08	11341919	43833626	90018269	124	136861											
VDR	7421	broad.mit.edu	37	chr12	48272937	48272937	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccacggtcagagccagagTcagtgccagggccagctggc	16	13	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48272937	C	C	48272937	1	2	166	0	1	0	0	0	0	0	0	0	17276	1682	58	5		5	VDR	12	48272937	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	4439311	48272937	85578958	125	136862											
INHBE	83729	broad.mit.edu	37	chr12	57850082	57850082	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatcaccaacctgggctgGcataccttaactctgccctc	6	17	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57850082	A	A	57850082	4	1	166	1	0	0	0	0	0	1	0	0	7814	1212	42	4	510	4	INHBE	12	57850082	Nonsense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	9577145	57850082	76001813	126	136863											
MMAB	326625	broad.mit.edu	37	chr12	110006724	110006724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgttttcctgatatgctGtttttttttttttaaacttt	4	5	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110006724	T	T	110006724	1	4	166	0	1	0	0	0	0	0	0	0	9733	1392	48	3		3	MMAB	12	110006724	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	52156642	110006724	23845171	127	136864											
RPL6	6128	broad.mit.edu	37	chr12	112843710	112843710	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgggcttccgcagctTcttcttcttgaagtaagcat	10	10	4	1	rs148929822	byFrequency	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112843710	G	G	112843710	3	3	166	1	0	0	0	0	1	0	0	0	13709	1792	62	5	213	5	RPL6	12	112843710	Missense_Mutation	SNP	T	TCGA-50-5944-01A-11D-1753-08	2836986	112843710	21008185	128	136865											
TBX5	6910	broad.mit.edu	37	chr12	114823226	114823226	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggttgctgctggcttaccTgggtaatttgaggggtatgt	16	5	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114823226	A	A	114823226	1	1	166	0	1	0	0	0	0	0	0	0	15783	1595	55	5		5	TBX5	12	114823226	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	1979516	114823226	19028669	129	136866											
IFT88	8100	broad.mit.edu	37	chr13	21181799	21181799	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctgggttctggtggacctCtcagctttcctggtcagcag	12	12	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21181799	T	T	21181799	1	4	166	0	1	0	0	0	0	0	0	0	7636	928	32	4		4	IFT88	13	21181799	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08		21181799	93988079	130	136867											
OXA1L	5018	broad.mit.edu	37	chr14	23236654	23236654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgcaatattaggagtgGtgtttcctggttggtttcat	11	6	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23236654	T	T	23236654	1	4	166	0	1	0	0	0	0	0	0	0	11422	1276	44	3		3	OXA1L	14	23236654	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08		23236654	84112886	131	136868											
MDP1	145553	broad.mit.edu	37	chr14	24683410	24683410	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcagggttctccattattActctgacctttgtgagtgcc	8	10	3	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24683410	G	G	24683410	1	3	166	0	1	0	0	0	0	0	0	0	9509	406	14	5		5	MDP1	14	24683410	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08	1446756	24683410	82666130	132	136869											
CFL2	1073	broad.mit.edu	37	chr14	35182544	35182544	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catatcggcaatcattcagaGgtagcaacttcacaaaagat	7	9	3	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35182544	A	A	35182544	3	1	166	1	0	0	0	0	1	0	0	0	3321	1000	35	4	285	4	CFL2	14	35182544	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	10499134	35182544	72166996	133	136870											
SSTR1	6751	broad.mit.edu	37	chr14	38679102	38679102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggcggcccgctaccgcCggcccaccgtggccaaggta	13	17	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38679102	T	T	38679102	3	4	166	1	0	0	0	0	1	0	0	0	15315	643	23	4	510	4	SSTR1	14	38679102	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	3496558	38679102	68670438	134	136871											
MIA2	117153	broad.mit.edu	37	chr14	39716224	39716224	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttatgaagaagataaagAtgaaaaatctagtatatatg	7	3	1	5			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39716224	T	T	39716224	3	4	166	1	0	0	0	0	1	0	0	0	9657	333	12	5	460	5	MIA2	14	39716224	Missense_Mutation	SNP	A	TCGA-50-5944-01A-11D-1753-08	1037122	39716224	67633316	135	136872											
MDGA2	161357	broad.mit.edu	37	chr14	47315146	47315146	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttctcttgagaaatcaaGgtgacaaaaataaacttgtc	7	6	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47315146	T	T	47315146	1	4	166	0	1	0	0	0	0	0	0	0	9500	1015	35	2		2	MDGA2	14	47315146	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	7598922	47315146	60034394	136	136873											
PPM1A	5494	broad.mit.edu	37	chr14	60756655	60756655	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagttacattctgtacactcTtatgctttatgtcagtgtat	6	7	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60756655	G	G	60756655	1	3	166	0	1	0	0	0	0	0	0	0	12436	1624	56	5		5	PPM1A	14	60756655	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	13441509	60756655	46592885	137	136874											
DLST	1743	broad.mit.edu	37	chr14	75364926	75364926	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagttactgtgttaacctCaggtagactatttcaaaact	7	8	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75364926	T	T	75364926	1	4	166	0	1	0	0	0	0	0	0	0	4609	841	29	4		4	DLST	14	75364926	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	14608271	75364926	31984614	138	136875											
SERPINA3	12	broad.mit.edu	37	chr14	95085495	95085495	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgagcagggcgacccttgCactcacaccttctccaactg	9	16	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95085495	T	T	95085495	1	4	166	0	1	0	0	0	0	0	0	0	14203	725	25	4		4	SERPINA3	14	95085495	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	19720569	95085495	12264045	139	136876											
TYRO3	7301	broad.mit.edu	37	chr15	41865675	41865675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgacgtggtgagcaggGtggcccgtgaagcttggtgg	20	6	0	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41865675	A	A	41865675	1	1	166	0	1	0	0	0	0	0	0	0	16940	1276	44	4		4	TYRO3	15	41865675	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08		41865675	60665717	140	136877											
WDR72	256764	broad.mit.edu	37	chr15	53889528	53889528	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattacaaatgcttgggtaTgttgcaaaaaatccaaagcc	7	7	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53889528	C	C	53889528	1	2	166	0	1	0	0	0	0	0	0	0	17449	1479	51	5		5	WDR72	15	53889528	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	12023853	53889528	48641864	141	136878											
DENND4A	10260	broad.mit.edu	37	chr15	66021846	66021846	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtttaaactaaattgacTgccaataagaaactgtgata	6	5	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66021846	G	G	66021846	1	3	166	0	1	0	0	0	0	0	0	0	4473	1595	55	5		5	DENND4A	15	66021846	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	12132318	66021846	36509546	142	136879											
BCL2A1	597	broad.mit.edu	37	chr15	80253408	80253408	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatatggagtgtcctttctgGtcaacagtattgcttcagga	10	7	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80253408	C	C	80253408	1	2	166	0	1	0	0	0	0	0	0	0	1371	1276	44	4		4	BCL2A1	15	80253408	3'UTR	SNP	G	TCGA-50-5944-01A-11D-1753-08	14231562	80253408	22277984	143	136880											
LINS1	55180	broad.mit.edu	37	chr15	101115176	101115176	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgatgattgtttatgggGccatgtaatccatacctgtt	10	6	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101115176	C	C	101115176	1	2	166	0	1	0	0	0	0	0	0	0	8891	1218	42	4		4	LINS1	15	101115176	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	20861768	101115176	1416216	144	136881											
SOLH	6650	broad.mit.edu	37	chr16	601212	601212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggtgagggtccccagtcGgtgagggtcccggtcagtga	18	10	1	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	601212	A	A	601212	1	1	166	0	1	0	0	0	0	0	0	0	15039	1131	39	4		4	SOLH	16	601212	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08		601212	89753541	145	136882											
C16orf73	254528	broad.mit.edu	37	chr16	1894854	1894854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccaaatatatttaaacgGtcacttacaatttatggatt	4	6	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1894854	T	T	1894854	1	4	166	0	1	0	0	0	0	0	0	0	1846	1276	44	3		3	C16orf73	16	1894854	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	1293642	1894854	88459899	146	136883											
RPL3L	6123	broad.mit.edu	37	chr16	2000751	2000751	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgtgccgaggctcgggTatttttaggctgacatttgc	14	8	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2000751	G	G	2000751	1	3	166	0	1	0	0	0	0	0	0	0	13705	1653	57	5		5	RPL3L	16	2000751	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	105897	2000751	88354002	147	136884											
NUDT16L1	84309	broad.mit.edu	37	chr16	4745281	4745281	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaccccgcttctgactgCctagggcgagtgggcatcct	13	13	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4745281	T	T	4745281	1	4	166	0	1	0	0	0	0	0	0	0	10828	754	26	4		4	NUDT16L1	16	4745281	3'UTR	SNP	C	TCGA-50-5944-01A-11D-1753-08	2744530	4745281	85609472	148	136885											
AQP8	343	broad.mit.edu	37	chr16	25238282	25238282	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgatgtaggagtttagAgagggtttctgggtggtgtg	17	3	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25238282	C	C	25238282	1	2	166	0	1	0	0	0	0	0	0	0	834	319	11	5		5	AQP8	16	25238282	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08	20493001	25238282	65116471	149	136886											
GSG1L	146395	broad.mit.edu	37	chr16	27856237	27856237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgccttgggccctggtgCctgaagctgctcttgtcctg	14	13	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27856237	A	A	27856237	1	1	166	0	1	0	0	0	0	0	0	0	6887	754	26	3		3	GSG1L	16	27856237	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	2617955	27856237	62498516	150	136887											
ITGAM	3684	broad.mit.edu	37	chr16	31282350	31282351	+	Missense_Mutation	DNP	GG	TT	TT													catcccacatgactttcggcGgatgaaggagtttgtctcaa							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31282351	TT	TT	31282350	3	4	166	1	0	0	0	0	1	0	0	0	7957	1116	39	1	525	1	ITGAM	16	31282350	Missense_Mutation	DNP	GG	TCGA-50-5944-01A-11D-1753-08	3426113	31282350	59072403	151	136888											
SALL1	6299	broad.mit.edu	37	chr16	51173914	51173914	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcgtggtgaaagcccggCcacagatcttacacttaaag	9	11	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51173914	T	T	51173914	3	4	166	1	0	0	0	0	1	0	0	0	13921	739	26	4	1763	4	SALL1	16	51173914	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	19891564	51173914	39180839	152	136889											
IRX6	79190	broad.mit.edu	37	chr16	55360423	55360423	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggcatctatggagcacCctatgcggccgctgcagctg	13	13	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55360423	T	T	55360423	3	4	166	1	0	0	0	0	1	0	0	0	7918	623	22	4	227	4	IRX6	16	55360423	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	4186509	55360423	34994330	153	136890											
RSPRY1	89970	broad.mit.edu	37	chr16	57261295	57261295	+	Frame_Shift_Del	DEL	T	-	-													gatgaatactcctgtgcgtaTgatggctgccggcagctgat							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57261295	-	-	57261295	7	5	166	1	0	1	0	1	0	0	0	0	13824	1471	51	0	1241	0	RSPRY1	16	57261295	Frame_Shift_Del	DEL	T	TCGA-50-5944-01A-11D-1753-08	1900872	57261295	33093458	154	136891											
HYDIN	54768	broad.mit.edu	37	chr16	70989186	70989186	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agacttcaaccaggctgtggGaggagagctcagtggggcac	16	9	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70989186	T	T	70989186	1	4	166	0	1	0	0	0	0	0	0	0	7537	1189	41	3		3	HYDIN	16	70989186	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	13727891	70989186	19365567	155	136892											
CNTNAP4	85445	broad.mit.edu	37	chr16	76556183	76556184	+	Intron	INS	-	T	T													ctttttaagcaatcattttaINSttgtatgatatgtgttcaga							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76556184	T	T	76556183	6	5	166	0	1	1	1	0	0	0	0	0	3681	464	16	0		0	CNTNAP4	16	76556183	Intron	INS	-	TCGA-50-5944-01A-11D-1753-08	5566997	76556183	13798570	156	136893											
PKD1L2	114780	broad.mit.edu	37	chr16	81151065	81151065	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcgctccagctggccagGatgatggccagctccagaag	15	12	0	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81151065	T	T	81151065	2	4	166	1	0	0	0	0	0	0	0	1	12060	1164	41	3		3	PKD1L2	16	81151065	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	4594882	81151065	9203688	157	136894											
CPNE7	27132	broad.mit.edu	37	chr16	89662090	89662090	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccaagaccttcccaggccAggctcacgccagtggatgtg	12	15	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89662090	T	T	89662090	1	4	166	0	1	0	0	0	0	0	0	0	3849	203	7	5		5	CPNE7	16	89662090	Intron	SNP	A	TCGA-50-5944-01A-11D-1753-08	8511025	89662090	692663	158	136895											
ZZEF1	23140	broad.mit.edu	37	chr17	3990763	3990763	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtaaaaattccagaagatCtgcaaatcaagacccgcgaa	7	10	2	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3990763	T	T	3990763	2	4	166	1	0	0	0	0	0	0	0	1	18384	912	32	4		4	ZZEF1	17	3990763	Silent	SNP	C	TCGA-50-5944-01A-11D-1753-08		3990763	77204447	159	136896											
RABEP1	9135	broad.mit.edu	37	chr17	5286437	5286437	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagttagagcggatccgGcaagctgactccttggagag	15	9	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5286437	A	A	5286437	2	1	166	1	0	0	0	0	0	0	0	1	13069	1190	42	4		4	RABEP1	17	5286437	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	1295674	5286437	75908773	160	136897											
TP53	7157	broad.mit.edu	37	chr17	7577085	7577085	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgcggagattctcttcctCtgtgcgccggtctctcccag	10	15	3	1	rs112431538		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577085	A	A	7577085	4	1	166	1	0	0	0	0	0	1	0	0	16505	922	32	3	433	3	TP53	17	7577085	Nonsense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	2290648	7577085	73618125	161	136898											
PHF12	57649	broad.mit.edu	37	chr17	27239438	27239438	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatataagtgcttttagaaTcttatttgccagaaagagca	9	5	1	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27239438	A	A	27239438	1	1	166	0	1	0	0	0	0	0	0	0	11918	1450	50	5		5	PHF12	17	27239438	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	19662353	27239438	53955772	162	136899											
PIP4K2B	8396	broad.mit.edu	37	chr17	36935652	36935652	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttgaggtcatacttgCgatgcacagtgagccgatgg	12	9	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36935652	T	T	36935652	3	4	166	1	0	0	0	0	1	0	0	0	12032	768	27	4	636	4	PIP4K2B	17	36935652	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	9696214	36935652	44259558	163	136900											
KRT25	147183	broad.mit.edu	37	chr17	38906800	38906800	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggatctgcgccagctgcGcacagtagttgctctcggtc	12	14	2	0	rs77242879	byFrequency;by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38906800	A	A	38906800	3	1	166	1	0	0	0	0	1	0	0	0	8533	1087	38	4	357	4	KRT25	17	38906800	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	1971148	38906800	42288410	164	136901											
HDAC5	10014	broad.mit.edu	37	chr17	42188978	42188978	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaaaggaattggaagggtCtaggagaggctggcacacag	17	5	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42188978	G	G	42188978	1	3	166	0	1	0	0	0	0	0	0	0	7077	928	32	4		4	HDAC5	17	42188978	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	3282178	42188978	39006232	165	136902											
HDAC5	10014	broad.mit.edu	37	chr17	42189016	42189016	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggcaccttccctggagttCtaatagccccatggaggttt	10	12	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42189016	G	G	42189016	1	3	166	0	1	0	0	0	0	0	0	0	7077	928	32	4		4	HDAC5	17	42189016	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	38	42189016	39006194	166	136903											
MED13	9969	broad.mit.edu	37	chr17	60040305	60040305	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgaatcaccatctgtgggGattcccactttatcccgatc	8	12	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60040305	T	T	60040305	2	4	166	1	0	0	0	0	0	0	0	1	9523	1164	41	3		3	MED13	17	60040305	Silent	SNP	G	TCGA-50-5944-01A-11D-1753-08	17851289	60040305	21154905	167	136904											
CCDC45	90799	broad.mit.edu	37	chr17	62504728	62504728	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagtgggtaaccattgccaAtaaccttctttttaagtgtc	8	8	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62504728	G	G	62504728	3	3	166	1	0	0	0	0	1	0	0	0	2844	101	4	5	44	5	CCDC45	17	62504728	Missense_Mutation	SNP	A	TCGA-50-5944-01A-11D-1753-08	2464423	62504728	18690482	168	136905											
TBC1D16	125058	broad.mit.edu	37	chr17	77915948	77915948	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagctgctgctcgatgaCgtcatccccgtagatggcca	12	14	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77915948	T	T	77915948	3	4	166	1	0	0	0	0	1	0	0	0	15724	536	19	4	345	4	TBC1D16	17	77915948	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	15411220	77915948	3279262	169	136906											
BAHCC1	57597	broad.mit.edu	37	chr17	79409981	79409981	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagccccggccggccccCcaggggcacagaaggtggcc	16	16	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79409981	T	T	79409981	3	4	166	1	0	0	0	0	1	0	0	0	1301	623	22	4	1455	4	BAHCC1	17	79409981	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	1494033	79409981	1785229	170	136907											
P4HB	5034	broad.mit.edu	37	chr17	79804869	79804869	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgaagttgctcagtttgCcgtcatagtcagacacactc	8	10	3	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79804869	T	T	79804869	3	4	166	1	0	0	0	0	1	0	0	0	11453	739	26	4	741	4	P4HB	17	79804869	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	394888	79804869	1390341	171	136908											
C18orf34	374864	broad.mit.edu	37	chr18	30791980	30791980	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatgatcaaacacagtttgTgcatgttcccttttaaatct	5	8	2	1	rs61749300		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30791980	A	A	30791980	2	1	166	1	0	0	0	0	0	0	0	1	1920	1683	59	5		5	C18orf34	18	30791980	Silent	SNP	T	TCGA-50-5944-01A-11D-1753-08		30791980	47285268	172	136909											
NOL4	8715	broad.mit.edu	37	chr18	31537161	31537161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaaacaaacgagcaaaCaaaaccccctttgacctgac	6	12	0	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31537161	A	A	31537161	1	1	166	0	1	0	0	0	0	0	0	0	10619	493	17	3		3	NOL4	18	31537161	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	745181	31537161	46540087	173	136910											
SLC14A1	6563	broad.mit.edu	37	chr18	43310932	43310932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggcctgtggttgaagaGtatcacttggcagcttcctt	14	8	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43310932	T	T	43310932	1	4	166	0	1	0	0	0	0	0	0	0	14509	1044	36	3		3	SLC14A1	18	43310932	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	11773771	43310932	34766316	174	136911											
ST8SIA5	29906	broad.mit.edu	37	chr18	44268625	44268625	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaccaggaccaagacaactGagtccagaggaccgtgagtg	12	11	0	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44268625	T	T	44268625	1	4	166	0	1	0	0	0	0	0	0	0	15353	1305	45	3		3	ST8SIA5	18	44268625	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	957693	44268625	33808623	175	136912											
KATNAL2	83473	broad.mit.edu	37	chr18	44580978	44580978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attacagctgccccagatttGggccaatgtccgtctactct	8	13	2	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44580978	T	T	44580978	1	4	166	0	1	0	0	0	0	0	0	0	8056	1363	47	2		2	KATNAL2	18	44580978	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	312353	44580978	33496270	176	136913											
SALL3	27164	broad.mit.edu	37	chr18	76752165	76752165	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcgagaaatgctgcgcCgagttcttcaagtgggcgga	16	8	2	1	rs140790375	byFrequency	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76752165	A	A	76752165	2	1	166	1	0	0	0	0	0	0	0	1	13923	639	23	1		1	SALL3	18	76752165	Silent	SNP	C	TCGA-50-5944-01A-11D-1753-08	32171187	76752165	1325083	177	136914											
POLR2E	5434	broad.mit.edu	37	chr19	1091773	1091773	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggggagaggctggcggggTggggcaggggtgcccacctg	24	8	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1091773	G	G	1091773	1	3	166	0	1	0	0	0	0	0	0	0	12313	1711	59	5		5	POLR2E	19	1091773	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08		1091773	58037210	178	136915											
OR7G1	125962	broad.mit.edu	37	chr19	9226266	9226266	+	Frame_Shift_Del	DEL	G	-	-													ttaaagagaaggaagtacatGggggtgtggaggtgggagtc							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9226266	-	-	9226266	7	5	166	1	0	1	0	1	0	0	0	0	11316	1335	47	0	835	0	OR7G1	19	9226266	Frame_Shift_Del	DEL	G	TCGA-50-5944-01A-11D-1753-08	8134493	9226266	49902717	179	136916											
GRAMD1A	57655	broad.mit.edu	37	chr19	35512776	35512776	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attcacacctcgggtacgttCcgttggggccgggttggggt	16	10	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35512776	G	G	35512776	1	3	166	0	1	0	0	0	0	0	0	0	6813	870	30	4		4	GRAMD1A	19	35512776	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	26286510	35512776	23616207	180	136917											
RYR1	6261	broad.mit.edu	37	chr19	38948368	38948368	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggatgtcctttccttaatctCccaccccagggttaacaacc	6	15	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38948368	A	A	38948368	1	1	166	0	1	0	0	0	0	0	0	0	13879	870	30	3		3	RYR1	19	38948368	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	3435592	38948368	20180615	181	136918											
PSG4	5672	broad.mit.edu	37	chr19	43702476	43702476	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtggcatctttgattcTtccaaaggcatttttcaatc	7	9	3	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43702476	C	C	43702476	1	2	166	0	1	0	0	0	0	0	0	0	12763	1624	56	5		5	PSG4	19	43702476	Intron	SNP	T	TCGA-50-5944-01A-11D-1753-08	4754108	43702476	15426507	182	136919											
GYS1	2997	broad.mit.edu	37	chr19	49494725	49494725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgccttcgtctgcagcaccGtgtagatgccacccactgtg	10	15	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49494725	T	T	49494725	3	4	166	1	0	0	0	0	1	0	0	0	6977	1145	40	3	2139	3	GYS1	19	49494725	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	5792249	49494725	9634258	183	136920											
SIGLEC9	27180	broad.mit.edu	37	chr19	51630513	51630513	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgcagagctcagaacccTctcggctctcagcaggtcta	9	15	4	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51630513	A	A	51630513	2	1	166	1	0	0	0	0	0	0	0	1	14428	1538	54	5		5	SIGLEC9	19	51630513	Silent	SNP	T	TCGA-50-5944-01A-11D-1753-08	2135788	51630513	7498470	184	136921											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52148952	52148953	+	Intron	INS	-	ACAC	ACAC													tctttctctctctctcttctINSacacacacacacacacacac					rs141777694	by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACAC	52148953	ACAC	ACAC	52148952	6	5	166	0	1	1	1	0	0	0	0	0	14422	1537	53	0		0	SIGLEC14	19	52148952	Intron	INS	-	TCGA-50-5944-01A-11D-1753-08	518439	52148952	6980031	185	136922											
NLRP2	55655	broad.mit.edu	37	chr19	55505634	55505634	+	Intron	DEL	T	-	-													ttcttcctgtggttgatttcTaggctttggaactgcgacat							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55505634	-	-	55505634	6	5	166	0	1	1	0	1	0	0	0	0	10572	1537	53	0		0	NLRP2	19	55505634	Intron	DEL	T	TCGA-50-5944-01A-11D-1753-08	3356682	55505634	3623349	186	136923											
NLRP4	147945	broad.mit.edu	37	chr19	56382251	56382251	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatctctgaaatgcttctgCgtaacaagagcgtgcgctat	9	10	2	2	rs144714657	by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56382251	G	G	56382251	3	3	166	1	0	0	0	0	1	0	0	0	10574	768	27	4	2435	4	NLRP4	19	56382251	Missense_Mutation	SNP	C	TCGA-50-5944-01A-11D-1753-08	876617	56382251	2746732	187	136924											
ZNF582	147948	broad.mit.edu	37	chr19	56896634	56896634	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aataagaactggagggtttaGactcaatgcctattaactct	8	7	2	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56896634	T	T	56896634	1	4	166	0	1	0	0	0	0	0	0	0	18141	957	33	3		3	ZNF582	19	56896634	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	514383	56896634	2232349	188	136925											
CDC25B	994	broad.mit.edu	37	chr20	3783699	3783699	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctggggacaggctagggCcacctgccagctgccagcct	13	16	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3783699	T	T	3783699	1	4	166	0	1	0	0	0	0	0	0	0	3093	754	26	4		4	CDC25B	20	3783699	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08		3783699	59241821	189	136926											
SPAG4	6676	broad.mit.edu	37	chr20	34205536	34205536	+	Intron	SNP	G	A	A													gaagggacgctggcgccccaGgaacagctctttggaggggg							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34205536	A	A	34205536	1	1	166	0	1	0	0	0	0	0	0	0	15096	1015	35	4		4	SPAG4	20	34205536	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	30421837	34205536	28819984	190	136927	585	2	2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34205542	34205542	+	Intron	SNP	G	A	A													acgctggcgccccaggaacaGctctttggagggggtgggga							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34205542	A	A	34205542	1	1	166	0	1	0	0	0	0	0	0	0	15096	986	34	4		4	SPAG4	20	34205542	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	6	34205542	28819978	191	136928	585	2	2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34205665	34205665	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggactggagggttgaGcaggtcggggcctcagcctc	20	9	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34205665	C	C	34205665	1	2	166	0	1	0	0	0	0	0	0	0	15096	986	34	4		4	SPAG4	20	34205665	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	123	34205665	28819855	192	136929			2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34205984	34205984	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attctcttccttttccttctGagacccctccctctctttct	2	17	4	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34205984	C	C	34205984	1	2	166	0	1	0	0	0	0	0	0	0	15096	1305	45	4		4	SPAG4	20	34205984	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	319	34205984	28819536	193	136930			2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34206123	34206123	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagattgtgggggtcccctGgactgtcggtctgctggggt	19	8	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34206123	A	A	34206123	1	1	166	0	1	0	0	0	0	0	0	0	15096	1363	47	4		4	SPAG4	20	34206123	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	139	34206123	28819397	194	136931			2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34207180	34207180	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaacactgcctacttctGgaatcgcttcagcttctgga	9	12	3	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34207180	A	A	34207180	4	1	166	1	0	0	0	0	0	1	0	0	15096	1357	47	4	891	4	SPAG4	20	34207180	Nonsense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	1057	34207180	28818340	195	136932			2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34207242	34207242	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttatcctggaggtgagtctgGaaacatcccgggatgggacc	14	9	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34207242	C	C	34207242	1	2	166	0	1	0	0	0	0	0	0	0	15096	1189	41	4		4	SPAG4	20	34207242	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	62	34207242	28818278	196	136933			2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34207279	34207279	+	Intron	SNP	G	A	A													gaccccgggcgggacgctggGaaaagcaccaaaaccccgcc							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34207279	A	A	34207279	1	1	166	0	1	0	0	0	0	0	0	0	15096	1189	41	4		4	SPAG4	20	34207279	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	37	34207279	28818241	197	136934	586	2	2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34207284	34207284	+	Intron	SNP	G	C	C													cgggcgggacgctgggaaaaGcaccaaaaccccgccctaca							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34207284	C	C	34207284	1	2	166	0	1	0	0	0	0	0	0	0	15096	986	34	4		4	SPAG4	20	34207284	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	5	34207284	28818236	198	136935	586	2	2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34207380	34207380	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggcattgctggggactgGggcgggctggaggtggagct	21	8	0	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34207380	C	C	34207380	1	2	166	0	1	0	0	0	0	0	0	0	15096	1247	43	4		4	SPAG4	20	34207380	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	96	34207380	28818140	199	136936			2	107		11	9	3130	N	G	9.939651e-19
SPAG4	6676	broad.mit.edu	37	chr20	34208665	34208665	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattcaccttcgatgttgaGaaatcggagattcagacttt	8	7	2	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34208665	C	C	34208665	3	2	166	1	0	0	0	0	1	0	0	0	15096	933	33	4	1179	4	SPAG4	20	34208665	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	1285	34208665	28816855	200	136937			2	107		11	9	3130	N	G	9.939651e-19
C20orf24	55969	broad.mit.edu	37	chr20	35237963	35237963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagttctgagtcttctaaGctttcaatttatgtttggta	8	7	4	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35237963	T	T	35237963	1	4	166	0	1	0	0	0	0	0	0	0	2127	986	34	3		3	C20orf24	20	35237963	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	1029298	35237963	27787557	201	136938											
LAMA5	3911	broad.mit.edu	37	chr20	60910196	60910196	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggtgccctgggggccaaggGaggaggtgaagtggggcagg	23	7	0	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60910196	A	A	60910196	1	1	166	0	1	0	0	0	0	0	0	0	8681	1189	41	4		4	LAMA5	20	60910196	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	25672233	60910196	2115324	202	136939											
COL6A2	1292	broad.mit.edu	37	chr21	47532313	47532313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaagctgcaggccgagcGggcccgcgaggagggcatcc	16	14	1	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47532313	T	T	47532313	3	4	166	1	0	0	0	0	1	0	0	0	3732	1116	39	1	542	1	COL6A2	21	47532313	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08		47532313	597582	203	136940											
TOP3B	8940	broad.mit.edu	37	chr22	22323138	22323138	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttcccctggaaatatttAgtctgaaacctggagggagt	10	7	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22323138	G	G	22323138	2	3	166	1	0	0	0	0	0	0	0	1	16492	407	15	5		5	TOP3B	22	22323138	Silent	SNP	A	TCGA-50-5944-01A-11D-1753-08		22323138	28981428	204	136941											
C22orf43	51233	broad.mit.edu	37	chr22	23955358	23955358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagacctcacacatatttcCattttctttctgatttcata	2	12	4	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23955358	A	A	23955358	1	1	166	0	1	0	0	0	0	0	0	0	2172	609	21	2		2	C22orf43	22	23955358	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	1632220	23955358	27349208	205	136942											
CRYBB1	1414	broad.mit.edu	37	chr22	27012048	27012048	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaggagaagaaggaggagGagggaaggaaggaaagaagg	22	0	0	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27012048	T	T	27012048	1	4	166	0	1	0	0	0	0	0	0	0	3942	1189	41	3		3	CRYBB1	22	27012048	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	3056690	27012048	24292518	206	136943											
EP300	2033	broad.mit.edu	37	chr22	41521784	41521784	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctttgaaactgtctttgtGaacttggaagtgaaatcaga	9	6	2	4			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41521784	A	A	41521784	1	1	166	0	1	0	0	0	0	0	0	0	5190	1305	45	4		4	EP300	22	41521784	Intron	SNP	G	TCGA-50-5944-01A-11D-1753-08	14509736	41521784	9782782	207	136944											
DMD	1756	broad.mit.edu	37	chrX	32328141	32328141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagtcaattgttctggcaCtatgaatgatcagtatgatc	8	6	3	3			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32328141	A	A	32328141	1	1	166	0	1	0	0	0	0	0	0	0	4620	580	20	3		3	DMD	23	32328141	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08		32328141	122942419	208	136945											
FOXP3	50943	broad.mit.edu	37	chrX	49113188	49113188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagggccggtagactggCacaggcctgggccactcact	14	14	1	1			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49113188	A	A	49113188	1	1	166	0	1	0	0	0	0	0	0	0	6088	725	25	3		3	FOXP3	23	49113188	Intron	SNP	C	TCGA-50-5944-01A-11D-1753-08	16785047	49113188	106157372	209	136946											
ATRX	546	broad.mit.edu	37	chrX	76875916	76875916	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaaataatcctcctccttGatcgtatagaattcatagct	4	9	1	2			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76875916	T	T	76875916	4	4	166	1	0	0	0	0	0	1	0	0	1212	1294	45	3	2323	3	ATRX	23	76875916	Nonsense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	27762728	76875916	78394644	210	136947											
THOC2	57187	broad.mit.edu	37	chrX	122830700	122830700	+	Intron	DEL	A	-	-													ctgaaactaaatactgtattAaaaaatattaaaggtcattt							TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122830700	-	-	122830700	6	5	166	0	1	1	0	1	0	0	0	0	15988	377	13	0		0	THOC2	23	122830700	Intron	DEL	A	TCGA-50-5944-01A-11D-1753-08	45954784	122830700	32439860	211	136948											
ACTRT1	139741	broad.mit.edu	37	chrX	127185954	127185954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcccatcctgttaccaGtccacgctcaatggggtagt	9	13	2	0			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127185954	T	T	127185954	3	4	166	1	0	0	0	0	1	0	0	0	218	1020	36	3	902	3	ACTRT1	23	127185954	Missense_Mutation	SNP	G	TCGA-50-5944-01A-11D-1753-08	4355254	127185954	28084606	212	136949											
SGIP1	84251	broad.mit.edu	37	chr1	67154753	67154753	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaatgtccGggactggcattatactgtga							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67154753	-	-	67154753	6	5	167	0	1	1	0	1	0	0	0	0	14319	1131	39	0		0	SGIP1	1	67154753	Intron	DEL	G	TCGA-50-5946-01A-11D-1753-08		67154753	182095868	1	136950											
NPR1	4881	broad.mit.edu	37	chr1	153656313	153656314	+	Intron	INS	-	T	T													tatacaggtgagctgtgatgINStggggggttgagtgaggctg							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153656314	T	T	153656313	6	5	167	0	1	1	1	0	0	0	0	0	10689	1392	48	0		0	NPR1	1	153656313	Intron	INS	-	TCGA-50-5946-01A-11D-1753-08	86501560	153656313	95594308	2	136951											
TRIM46	80128	broad.mit.edu	37	chr1	155149784	155149785	+	Intron	INS	-	GTA	GTA													aggtgagggagggcacagagINSgtaggccctgggccctgcct							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GTA	155149785	GTA	GTA	155149784	6	5	167	0	1	1	1	0	0	0	0	0	16646	1015	35	0		0	TRIM46	1	155149784	Intron	INS	-	TCGA-50-5946-01A-11D-1753-08	1493471	155149784	94100837	3	136952											
RALGPS2	55103	broad.mit.edu	37	chr1	178716753	178716753	+	Intron	DEL	T	-	-													gtaactcctttgtcctcttcTatgtcaactaagctggcatt							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	178716753	-	-	178716753	6	5	167	0	1	1	0	1	0	0	0	0	13126	1537	53	0		0	RALGPS2	1	178716753	Intron	DEL	T	TCGA-50-5946-01A-11D-1753-08	23566969	178716753	70533868	4	136953											
OR2M2	391194	broad.mit.edu	37	chr1	248343407	248343407	+	Frame_Shift_Del	DEL	G	-	-													atctttttagtggccttcatGggaaactctgtcatggttct							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248343407	-	-	248343407	7	5	167	1	0	1	0	1	0	0	0	0	11104	1348	47	0	122	0	OR2M2	1	248343407	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08	69626654	248343407	907214	5	136954											
LRP1B	53353	broad.mit.edu	37	chr2	141459630	141459631	+	Intron	INS	-	T	T													tttgtgaccttgctaagaaaINStggtaaatcctacaagggta							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141459631	T	T	141459630	6	5	167	0	1	1	1	0	0	0	0	0	9042	116	4	0		0	LRP1B	2	141459630	Intron	INS	-	TCGA-50-5946-01A-11D-1753-08		141459630	101739743	6	136955											
CCDC54	84692	broad.mit.edu	37	chr3	107097399	107097401	+	In_Frame_Del	DEL	AAG	-	-													cggctttatttgttccttaaAagaagaagtaactcgactat							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107097401	-	-	107097399	7	5	167	1	0	1	0	1	0	0	0	0	2852	14	1	0	967	0	CCDC54	3	107097399	In_Frame_Del	DEL	AAG	TCGA-50-5946-01A-11D-1753-08		107097399	90925031	7	136956											
ATG3	64422	broad.mit.edu	37	chr3	112260671	112260676	+	In_Frame_Del	DEL	CTTCAT	-	-													ttccatatctgcagcttctcCttcatcttcatcttcttcct							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112260676	-	-	112260671	7	5	167	1	0	1	0	1	0	0	0	0	1099	690	24	0	514	0	ATG3	3	112260671	In_Frame_Del	DEL	CTTCAT	TCGA-50-5946-01A-11D-1753-08	5163272	112260671	85761759	8	136957											
SI	6476	broad.mit.edu	37	chr3	164697221	164697221	+	Intron	DEL	A	-	-													cagatcaatacgtaatatctAaaaaagtaaaataataatta							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164697221	-	-	164697221	6	5	167	0	1	1	0	1	0	0	0	0	14410	377	13	0		0	SI	3	164697221	Intron	DEL	A	TCGA-50-5946-01A-11D-1753-08	52436550	164697221	33325209	9	136958											
KIAA0232	9778	broad.mit.edu	37	chr4	6864770	6864770	+	Frame_Shift_Del	DEL	G	-	-													tcagagtaccatctgtgggaGggacagaaagagagcctgga							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6864770	-	-	6864770	7	5	167	1	0	1	0	1	0	0	0	0	8233	991	35	0	2679	0	KIAA0232	4	6864770	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08		6864770	184289506	10	136959											
SORCS2	57537	broad.mit.edu	37	chr4	7728436	7728450	+	Intron	DEL	CCATAGGCCAGCGTC	-	-													tgctctcagtgaggcagcgaCcataggccagcgtcccccac							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7728450	-	-	7728436	6	5	167	0	1	1	0	1	0	0	0	0	15045	522	18	0		0	SORCS2	4	7728436	Intron	DEL	CCATAGGCCAGCGTC	TCGA-50-5946-01A-11D-1753-08	863666	7728436	183425840	11	136960											
LIMCH1	22998	broad.mit.edu	37	chr4	41687873	41687873	+	Intron	DEL	G	-	-													taaccagacacgatggttgtGggattcccttttttaaaaat							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41687873	-	-	41687873	6	5	167	0	1	1	0	1	0	0	0	0	8869	1363	47	0		0	LIMCH1	4	41687873	Intron	DEL	G	TCGA-50-5946-01A-11D-1753-08	33959437	41687873	149466403	12	136961											
FRYL	285527	broad.mit.edu	37	chr4	48636331	48636332	+	Frame_Shift_Ins	INS	-	A	A													ggttcggccattacaacttcINSaattttcttttcagcttgaa							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48636332	A	A	48636331	7	5	167	1	0	1	1	0	0	0	0	0	6124	835	29	0	9188	0	FRYL	4	48636331	Frame_Shift_Ins	INS	-	TCGA-50-5946-01A-11D-1753-08	6948458	48636331	142517945	13	136962											
HSPA4L	22824	broad.mit.edu	37	chr4	128733853	128733853	+	Intron	DEL	T	-	-													tgtagcccagaggtcctttaTttttttttttttttaacacc							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128733853	-	-	128733853	6	5	167	0	1	1	0	1	0	0	0	0	7482	1508	52	0		0	HSPA4L	4	128733853	Intron	DEL	T	TCGA-50-5946-01A-11D-1753-08	80097522	128733853	62420423	14	136963											
NUP155	9631	broad.mit.edu	37	chr5	37325893	37325894	+	Intron	DEL	AT	-	-													aaaaaaaaaaaaaaaaaaaaAtaacctttgccatcttattt							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37325894	-	-	37325893	6	5	167	0	1	1	0	1	0	0	0	0	10851	116	4	0		0	NUP155	5	37325893	Intron	DEL	AT	TCGA-50-5946-01A-11D-1753-08		37325893	143589367	15	136964											
ITGA2	3673	broad.mit.edu	37	chr5	52369108	52369111	+	Intron	DEL	TACT	-	-													cggtatgtgatgagaccctgTacttacttccaccatgcttc							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52369111	-	-	52369108	6	5	167	0	1	1	0	1	0	0	0	0	7945	1653	57	0		0	ITGA2	5	52369108	Intron	DEL	TACT	TCGA-50-5946-01A-11D-1753-08	15043215	52369108	128546152	16	136965											
OCLN	4950	broad.mit.edu	37	chr5	68805265	68805270	+	In_Frame_Del	DEL	TGGCTA	-	-													ggctttggtagctacggaagTggctatggctatggctatgg							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68805270	-	-	68805265	7	5	167	1	0	1	0	1	0	0	0	0	10915	1693	59	0	354	0	OCLN	5	68805265	In_Frame_Del	DEL	TGGCTA	TCGA-50-5946-01A-11D-1753-08	16436157	68805265	112109995	17	136966											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725793	140725794	+	Frame_Shift_Ins	INS	-	T	T													tgcaggcttcgggaggcggcINSttggcgagtacgcccggctc							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140725794	T	T	140725793	7	5	167	1	0	1	1	0	0	0	0	0	11649	784	28	0	2195	0	PCDHGA3	5	140725793	Frame_Shift_Ins	INS	-	TCGA-50-5946-01A-11D-1753-08	71920528	140725793	40189467	18	136967											
FAT2	2196	broad.mit.edu	37	chr5	150921897	150921897	+	Frame_Shift_Del	DEL	G	-	-													ctcagaaatgtcagcatccaGggtctttagagtcgccacca							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150921897	-	-	150921897	7	5	167	1	0	1	0	1	0	0	0	0	5747	991	35	0	4318	0	FAT2	5	150921897	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08	10196104	150921897	29993363	19	136968											
C7orf25	79020	broad.mit.edu	37	chr7	42949986	42949987	+	Frame_Shift_Del	DEL	TG	-	-													tgccatggggctggagacacTgttgtaaaatgcaaagatga							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42949987	-	-	42949986	7	5	167	1	0	1	0	1	0	0	0	0	2405	1580	55	0	755	0	C7orf25	7	42949986	Frame_Shift_Del	DEL	TG	TCGA-50-5946-01A-11D-1753-08		42949986	116188677	20	136969											
PTPRZ1	5803	broad.mit.edu	37	chr7	121650666	121650667	+	Frame_Shift_Del	DEL	TG	-	-													atttccttgacttctcagacTgtgactgaactgccacctca							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121650667	-	-	121650666	7	5	167	1	0	1	0	1	0	0	0	0	12922	1567	55	0	1612	0	PTPRZ1	7	121650666	Frame_Shift_Del	DEL	TG	TCGA-50-5946-01A-11D-1753-08	78700680	121650666	37487997	21	136970											
TPD52	7163	broad.mit.edu	37	chr8	80950450	80950450	+	Frame_Shift_Del	DEL	C	-	-													ccaaaatcaccaccagcaggCttggttccccctactttaga							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80950450	-	-	80950450	7	5	167	1	0	1	0	1	0	0	0	0	16521	796	28	0	102	0	TPD52	8	80950450	Frame_Shift_Del	DEL	C	TCGA-50-5946-01A-11D-1753-08		80950450	65413572	22	136971											
GATA3	2625	broad.mit.edu	37	chr10	8106097	8106097	+	Frame_Shift_Del	DEL	G	-	-													cctcattaagcccaagcgaaGgctggtaagttctcgggaag							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8106097	-	-	8106097	7	5	167	1	0	1	0	1	0	0	0	0	6317	1000	35	0	930	0	GATA3	10	8106097	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08		8106097	127428650	23	136972											
SEC24C	9632	broad.mit.edu	37	chr10	75527681	75527681	+	Frame_Shift_Del	DEL	C	-	-													tgtgtagatctctttctcttCcctaaccagtatgtggatgt							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75527681	-	-	75527681	7	5	167	1	0	1	0	1	0	0	0	0	14109	854	30	0	2151	0	SEC24C	10	75527681	Frame_Shift_Del	DEL	C	TCGA-50-5946-01A-11D-1753-08	67421584	75527681	60007066	24	136973											
CYP2C8	1558	broad.mit.edu	37	chr10	96818037	96818046	+	Intron	DEL	ATGAATCACA	-	-													gtaaattacagaaggattcgAtgaatcacaaaatggacaag					rs112930590		TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	96818046	-	-	96818037	6	5	167	0	1	1	0	1	0	0	0	0	4200	348	12	0		0	CYP2C8	10	96818037	Intron	DEL	ATGAATCACA	TCGA-50-5946-01A-11D-1753-08	21290356	96818037	38716710	25	136974											
LMO7	4008	broad.mit.edu	37	chr13	76378355	76378356	+	Intron	DEL	GC	-	-													ctaagggaaagacaaagcagGcgcgctgtgtgggtttcagt							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76378356	-	-	76378355	6	5	167	0	1	1	0	1	0	0	0	0	8929	1218	42	0		0	LMO7	13	76378355	Intron	DEL	GC	TCGA-50-5946-01A-11D-1753-08		76378355	38791523	26	136975											
MYH7	4625	broad.mit.edu	37	chr14	23891376	23891376	+	Intron	DEL	G	-	-													aggaggaagggcagcagggaGgggacacagtactttttcag							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23891376	-	-	23891376	6	5	167	0	1	1	0	1	0	0	0	0	10133	1015	35	0		0	MYH7	14	23891376	Intron	DEL	G	TCGA-50-5946-01A-11D-1753-08		23891376	83458164	27	136976											
RYR3	6263	broad.mit.edu	37	chr15	34105645	34105646	+	Intron	INS	-	A	A													agatcagcctaatgtgcaccINSaaccgatgtgatctcttctc							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34105646	A	A	34105645	6	5	167	0	1	1	1	0	0	0	0	0	13881	609	21	0		0	RYR3	15	34105645	Intron	INS	-	TCGA-50-5946-01A-11D-1753-08		34105645	68425747	28	136977											
ERN2	10595	broad.mit.edu	37	chr16	23721788	23721788	+	Intron	DEL	C	-	-													ctctccagacaactatgagtCccccatctcccagaagcctc							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23721788	-	-	23721788	6	5	167	0	1	1	0	1	0	0	0	0	5280	870	30	0		0	ERN2	16	23721788	Intron	DEL	C	TCGA-50-5946-01A-11D-1753-08		23721788	66632965	29	136978											
BCMO1	53630	broad.mit.edu	37	chr16	81304004	81304004	+	Frame_Shift_Del	DEL	C	-	-													ccctcaggaggtttgccgtgCccctccacgtggacaaggta							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81304004	-	-	81304004	7	5	167	1	0	1	0	1	0	0	0	0	1389	739	26	0	1110	0	BCMO1	16	81304004	Frame_Shift_Del	DEL	C	TCGA-50-5946-01A-11D-1753-08	57582216	81304004	9050749	30	136979											
PLCG2	5336	broad.mit.edu	37	chr16	81929346	81929346	+	Intron	DEL	G	-	-													actgaactggtgtgtgggccGggggctgacctcggggctgt							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81929346	-	-	81929346	6	5	167	0	1	1	0	1	0	0	0	0	12131	1131	39	0		0	PLCG2	16	81929346	Intron	DEL	G	TCGA-50-5946-01A-11D-1753-08	625342	81929346	8425407	31	136980											
USP6	9098	broad.mit.edu	37	chr17	5073935	5073935	+	Frame_Shift_Del	DEL	G	-	-													gtagtaagaagaacttggatGccagcaaagagaatggggct							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5073935	-	-	5073935	7	5	167	1	0	1	0	1	0	0	0	0	17213	1319	46	0	3785	0	USP6	17	5073935	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08		5073935	76121275	32	136981											
TP53	7157	broad.mit.edu	37	chr17	7578458	7578458	+	Frame_Shift_Del	DEL	G	-	-													cttgtagatggccatggcgcGgacgcgggtgccgggcgggg							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7578458	-	-	7578458	7	5	167	1	0	1	0	1	0	0	0	0	16505	1116	39	0	826	0	TP53	17	7578458	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08	2504523	7578458	73616752	33	136982											
NF1	4763	broad.mit.edu	37	chr17	29586106	29586106	+	Frame_Shift_Del	DEL	T	-	-													aaagaagaacatatgcggccTttcaatgattttgtgaaaag							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29586106	-	-	29586106	7	5	167	1	0	1	0	1	0	0	0	0	10451	1596	56	0	4580	0	NF1	17	29586106	Frame_Shift_Del	DEL	T	TCGA-50-5946-01A-11D-1753-08	22007648	29586106	51609104	34	136983											
HOXB4	3214	broad.mit.edu	37	chr17	46654168	46654168	+	Frame_Shift_Del	DEL	G	-	-													cccgagcggatcttggtgttGggcaacttgtggtctttttt							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46654168	-	-	46654168	7	5	167	1	0	1	0	1	0	0	0	0	7370	1335	47	0	87	0	HOXB4	17	46654168	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08	17068062	46654168	34541042	35	136984											
ZNF333	84449	broad.mit.edu	37	chr19	14815991	14815992	+	Intron	DEL	GG	-	-													ctgggatgcacggtaagcctGggagaggttcactgtgatgg							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14815992	-	-	14815991	6	5	167	0	1	1	0	1	0	0	0	0	17976	1363	47	0		0	ZNF333	19	14815991	Intron	DEL	GG	TCGA-50-5946-01A-11D-1753-08		14815991	44312992	36	136985											
CYP4F3	4051	broad.mit.edu	37	chr19	15770154	15770154	+	Frame_Shift_Del	DEL	G	-	-													agccggagctggtcctgcgcGcagagggcggactttggctg							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15770154	-	-	15770154	7	5	167	1	0	1	0	1	0	0	0	0	4223	1087	38	0	1568	0	CYP4F3	19	15770154	Frame_Shift_Del	DEL	G	TCGA-50-5946-01A-11D-1753-08	954163	15770154	43358829	37	136986											
CHD6	84181	broad.mit.edu	37	chr20	40042165	40042165	+	Intron	DEL	G	-	-													tcatggacttcctggatgaaGgaaaaacgagtatgtataat							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40042165	-	-	40042165	6	5	167	0	1	1	0	1	0	0	0	0	3360	1015	35	0		0	CHD6	20	40042165	Intron	DEL	G	TCGA-50-5946-01A-11D-1753-08		40042165	22983355	38	136987											
CTPS2	56474	broad.mit.edu	37	chrX	16672438	16672438	+	Intron	DEL	C	-	-													ctgccttcttggcacacagaCcccaaggcctctaatttctg							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16672438	-	-	16672438	6	5	167	0	1	1	0	1	0	0	0	0	4057	522	18	0		0	CTPS2	23	16672438	Intron	DEL	C	TCGA-50-5946-01A-11D-1753-08		16672438	138598122	39	136988											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	167	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-50-5946-01A-11D-1753-08	36980409	53652847	101617713	40	136989											
ZNF449	203523	broad.mit.edu	37	chrX	134494660	134494675	+	Frame_Shift_Del	DEL	ACATATAAATGTCTTG	-	-													gaacccattctgaagaagaaAcatataaatgtcttgagtgt							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134494675	-	-	134494660	7	5	167	1	0	1	0	1	0	0	0	0	18047	43	2	0	1230	0	ZNF449	23	134494660	Frame_Shift_Del	DEL	ACATATAAATGTCTTG	TCGA-50-5946-01A-11D-1753-08	80841813	134494660	20775900	41	136990											
SPANXN3	139067	broad.mit.edu	37	chrX	142596896	142596896	+	Frame_Shift_Del	DEL	C	-	-													gaatttattttcttacccttCctgaggtaatacacaaatat							TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142596896	-	-	142596896	7	5	167	1	0	1	0	1	0	0	0	0	15108	854	30	0	255	0	SPANXN3	23	142596896	Frame_Shift_Del	DEL	C	TCGA-50-5946-01A-11D-1753-08	8102236	142596896	12673664	42	136991											
NPHP4	261734	broad.mit.edu	37	chr1	6021958	6021958	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccagggccgggtgtggcTtcagcgtgtactgcaggctg	17	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6021958	A	A	6021958	3	1	168	1	0	0	0	0	1	0	0	0	10676	1609	56	5	3811	5	NPHP4	1	6021958	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08		6021958	243228663	1	136992											
KCNAB2	8514	broad.mit.edu	37	chr1	6145239	6145239	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttctgtttggctgtgatGagagctcggtgtcttgtttt	12	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6145239	A	A	6145239	1	1	168	0	1	0	0	0	0	0	0	0	8080	1305	45	4		4	KCNAB2	1	6145239	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	123281	6145239	243105382	2	136993											
CHD5	26038	broad.mit.edu	37	chr1	6206332	6206332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgccatagcggtagaagCgctcctccatcttggcatag	11	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6206332	A	A	6206332	3	1	168	1	0	0	0	0	1	0	0	0	3359	768	27	3	4246	3	CHD5	1	6206332	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	61093	6206332	243044289	3	136994											
CLSTN1	22883	broad.mit.edu	37	chr1	9809460	9809460	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacaagtatttccagttgtAaaggtccctcccaccttcac	5	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9809460	G	G	9809460	1	3	168	0	1	0	0	0	0	0	0	0	3593	377	13	5		5	CLSTN1	1	9809460	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	3603128	9809460	239441161	4	136995											
MTOR	2475	broad.mit.edu	37	chr1	11292494	11292494	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaagcagtaatactcaccTgccttttggccaacaaagag	9	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11292494	A	A	11292494	3	1	168	1	0	0	0	0	1	0	0	0	10048	1594	55	5	5308	5	MTOR	1	11292494	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1483034	11292494	237958127	5	136996											
PTCHD2	57540	broad.mit.edu	37	chr1	11579699	11579699	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcctcaccaggcatctGggcttccctggaagcgagcg	13	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11579699	A	A	11579699	1	1	168	0	1	0	0	0	0	0	0	0	12839	1363	47	4		4	PTCHD2	1	11579699	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	287205	11579699	237670922	6	136997											
CLCN6	1185	broad.mit.edu	37	chr1	11883812	11883812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaaatgctatctgaatGgcgtaaaggtgccaggaatc	12	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11883812	T	T	11883812	3	4	168	1	0	0	0	0	1	0	0	0	3498	1348	47	2	528	2	CLCN6	1	11883812	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	304113	11883812	237366809	7	136998											
AADACL3	126767	broad.mit.edu	37	chr1	12779534	12779534	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaatttttctgtttcatgCaagatctgcctccgctaaag	6	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12779534	T	T	12779534	4	4	168	1	0	0	0	0	0	1	0	0	12	711	25	4	65	4	AADACL3	1	12779534	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	895722	12779534	236471087	8	136999											
CELA2A	63036	broad.mit.edu	37	chr1	15789920	15789921	+	Missense_Mutation	DNP	CC	AA	AA													aaactggctaaccccgtctcCctcaccgacaagatccagct							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	15789921	AA	AA	15789920	3	1	168	1	0	0	0	0	1	0	0	0	3241	610	22	2	414	2	CELA2A	1	15789920	Missense_Mutation	DNP	CC	TCGA-50-6590-01A-12D-1855-08	3010386	15789920	233460701	9	137000											
SPEN	23013	broad.mit.edu	37	chr1	16255328	16255328	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagagagaaagctgacaaaGagggaatagcgaaaaaccgc	13	7	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16255328	C	C	16255328	3	2	168	1	0	0	0	0	1	0	0	0	15156	943	33	4	2635	4	SPEN	1	16255328	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	465408	16255328	232995293	10	137001											
SPEN	23013	broad.mit.edu	37	chr1	16255445	16255445	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaagttgaaagccaagcttGataatgacactgtcaaatct	7	7	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16255445	C	C	16255445	3	2	168	1	0	0	0	0	1	0	0	0	15156	1290	45	4	2752	4	SPEN	1	16255445	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	117	16255445	232995176	11	137002											
SPEN	23013	broad.mit.edu	37	chr1	16257830	16257830	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctgtggaacagctggaaCaagtagacctgcccccagga	11	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16257830	G	G	16257830	3	3	168	1	0	0	0	0	1	0	0	0	15156	479	17	4	5137	4	SPEN	1	16257830	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2385	16257830	232992791	12	137003											
NBPF1	55672	broad.mit.edu	37	chr1	16892787	16892787	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccaacagcaatgtcagTaggagtaattcaaccttcgt	7	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16892787	C	C	16892787	1	2	168	0	1	0	0	0	0	0	0	0	10286	1653	57	5		5	NBPF1	1	16892787	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	634957	16892787	232357834	13	137004											
NBPF1	55672	broad.mit.edu	37	chr1	16907946	16907946	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgattccagtactttctcagCctcctcaacttgaacatctt	4	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16907946	G	G	16907946	3	3	168	1	0	0	0	0	1	0	0	0	10286	739	26	4	2136	4	NBPF1	1	16907946	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	15159	16907946	232342675	14	137005											
AKR7A3	22977	broad.mit.edu	37	chr1	19612377	19612377	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggcctctgcagccctggctCtcacctggtacacagtgggc	12	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19612377	G	G	19612377	1	3	168	0	1	0	0	0	0	0	0	0	476	928	32	4		4	AKR7A3	1	19612377	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2704431	19612377	229638244	15	137006											
PLA2G2F	64600	broad.mit.edu	37	chr1	20469903	20469903	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagcggccagccccggGgcaggggctcagagcacccc	17	16	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20469903	A	A	20469903	1	1	168	0	1	0	0	0	0	0	0	0	12094	1247	43	4		4	PLA2G2F	1	20469903	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	857526	20469903	228780718	16	137007											
KIF17	57576	broad.mit.edu	37	chr1	21011435	21011435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagccaccagggccaccgGggcctgagcctccaaccaca	11	18	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21011435	T	T	21011435	3	4	168	1	0	0	0	0	1	0	0	0	8349	1232	43	2	1015	2	KIF17	1	21011435	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	541532	21011435	228239186	17	137008											
KIF17	57576	broad.mit.edu	37	chr1	21039940	21039940	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcccacaatgggtctgCacccacctccagcttctgct	7	18	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21039940	T	T	21039940	1	4	168	0	1	0	0	0	0	0	0	0	8349	725	25	4		4	KIF17	1	21039940	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	28505	21039940	228210681	18	137009											
USP48	84196	broad.mit.edu	37	chr1	22078142	22078142	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacgacaaaattcagatcaGagtgtgaaaagcaacaaagt	9	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22078142	C	C	22078142	1	2	168	0	1	0	0	0	0	0	0	0	17206	957	33	4		4	USP48	1	22078142	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1038202	22078142	227172479	19	137010											
EPHA8	2046	broad.mit.edu	37	chr1	22923973	22923973	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatcatcggctctggtgAgtctcaggggttgtgagggc	16	7	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22923973	T	T	22923973	1	4	168	0	1	0	0	0	0	0	0	0	5215	319	11	5		5	EPHA8	1	22923973	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	845831	22923973	226326648	20	137011											
EPHB2	2048	broad.mit.edu	37	chr1	23219579	23219579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagaggagggcacagactcCacaaacagaacaaactcaag	9	11	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23219579	T	T	23219579	1	4	168	0	1	0	0	0	0	0	0	0	5217	609	21	4		4	EPHB2	1	23219579	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	295606	23219579	226031042	21	137012											
ZNF436	80818	broad.mit.edu	37	chr1	23689076	23689076	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtgtgggtcctctggtgctGagctaggtgagagctccggc	17	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23689076	C	C	23689076	3	2	168	1	0	0	0	0	1	0	0	0	18036	1299	45	4	617	4	ZNF436	1	23689076	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	469497	23689076	225561545	22	137013											
TMEM57	55219	broad.mit.edu	37	chr1	25785240	25785240	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcacctcgaagtcatagCgccacaaatgggagcattcc	8	13	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25785240	T	T	25785240	2	4	168	1	0	0	0	0	0	0	0	1	16307	767	27	4		4	TMEM57	1	25785240	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	2096164	25785240	223465381	23	137014											
RPS6KA1	6195	broad.mit.edu	37	chr1	26887626	26887626	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcatcactctgaaagatGtgagtgggggtccttaagac	11	8	3	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26887626	T	T	26887626	5	4	168	1	0	0	0	0	0	0	1	0	13761	1391	48	3	1633	3	RPS6KA1	1	26887626	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	1102386	26887626	222362995	24	137015											
SMPDL3B	27293	broad.mit.edu	37	chr1	28282220	28282220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgtcggccacgtgccccCggggttctttgagaagacgc	13	13	1	2	rs138724868		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28282220	A	A	28282220	3	1	168	1	0	0	0	0	1	0	0	0	14923	652	23	1	738	1	SMPDL3B	1	28282220	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1394594	28282220	220968401	25	137016											
YTHDF2	51441	broad.mit.edu	37	chr1	29069369	29069369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcactgaagttgggtaGcacagaagttgcaagcaatg	14	7	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29069369	T	T	29069369	3	4	168	1	0	0	0	0	1	0	0	0	17626	971	34	3	601	3	YTHDF2	1	29069369	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	787149	29069369	220181252	26	137017											
HCRTR1	3061	broad.mit.edu	37	chr1	32086599	32086599	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctggccatcatggtgccCcaggctgcagtcatggaatg	13	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32086599	A	A	32086599	2	1	168	1	0	0	0	0	0	0	0	1	7068	610	22	2		2	HCRTR1	1	32086599	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3017230	32086599	217164022	27	137018											
SPOCD1	90853	broad.mit.edu	37	chr1	32259389	32259389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaactccctggttttgggCatctctggagcaggcatagg	13	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32259389	A	A	32259389	3	1	168	1	0	0	0	0	1	0	0	0	15196	710	25	3	1177	3	SPOCD1	1	32259389	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	172790	32259389	216991232	28	137019											
CSMD2	114784	broad.mit.edu	37	chr1	34123757	34123757	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actggggcaaggaaatagaaGagagggtaaggtcgcctggg	18	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34123757	T	T	34123757	1	4	168	0	1	0	0	0	0	0	0	0	3979	957	33	3		3	CSMD2	1	34123757	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1864368	34123757	215126864	29	137020											
DLGAP3	58512	broad.mit.edu	37	chr1	35370309	35370309	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgatggtggtggtgatGgtggtgatgggaggtgtggg	25	0	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35370309	A	A	35370309	3	1	168	1	0	0	0	0	1	0	0	0	4601	1348	47	4	2303	4	DLGAP3	1	35370309	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1246552	35370309	213880312	30	137021											
MTF1	4520	broad.mit.edu	37	chr1	38281087	38281087	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatcaggagcctgggggctCggctctggagggggtgggga	21	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38281087	T	T	38281087	2	4	168	1	0	0	0	0	0	0	0	1	10016	871	31	4		4	MTF1	1	38281087	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	2910778	38281087	210969534	31	137022											
MACF1	23499	broad.mit.edu	37	chr1	39812670	39812670	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgaaacagcccatggctGaaaggaaagctcagctggat	11	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39812670	A	A	39812670	3	1	168	1	0	0	0	0	1	0	0	0	9232	1291	45	4	10710	4	MACF1	1	39812670	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1531583	39812670	209437951	32	137023											
PABPC4	8761	broad.mit.edu	37	chr1	40034456	40034456	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaatcccattgctaggctGggccaagaccaccttacctg	9	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40034456	A	A	40034456	1	1	168	0	1	0	0	0	0	0	0	0	11460	1363	47	4		4	PABPC4	1	40034456	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	221786	40034456	209216165	33	137024											
CTPS	1503	broad.mit.edu	37	chr1	41450572	41450572	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggttccttgacatccgcctCaccaaggacaataatctgac	7	14	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41450572	G	G	41450572	2	3	168	1	0	0	0	0	0	0	0	1	4056	813	29	4		4	CTPS	1	41450572	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1416116	41450572	207800049	34	137025											
HIVEP3	59269	broad.mit.edu	37	chr1	42047885	42047885	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccggccggtcaggctcctCagttactaggatctcaggaa	12	12	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42047885	T	T	42047885	3	4	168	1	0	0	0	0	1	0	0	0	7255	835	29	4	4660	4	HIVEP3	1	42047885	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	597313	42047885	207202736	35	137026											
KDM4A	9682	broad.mit.edu	37	chr1	44133828	44133828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtttttgatggagtctcGctctgtcgcccaggctggag	13	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44133828	T	T	44133828	1	4	168	0	1	0	0	0	0	0	0	0	8198	1102	38	3		3	KDM4A	1	44133828	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2085943	44133828	205116793	36	137027											
DPH2	1802	broad.mit.edu	37	chr1	44437298	44437298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggctgctcttggggtggGcaccaggtcaacccttctcc	13	14	3	0	rs144632086	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44437298	T	T	44437298	3	4	168	1	0	0	0	0	1	0	0	0	4760	1203	42	3	738	3	DPH2	1	44437298	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	303470	44437298	204813323	37	137028											
HECTD3	79654	broad.mit.edu	37	chr1	45475600	45475600	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgggggttctttctggatCtagccttgaggggtgtgact	17	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45475600	A	A	45475600	1	1	168	0	1	0	0	0	0	0	0	0	7108	928	32	3		3	HECTD3	1	45475600	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1038302	45475600	203775021	38	137029											
GPBP1L1	60313	broad.mit.edu	37	chr1	46095229	46095229	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttactaactggtctctaggAagaaggtttacaacatacct	8	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46095229	C	C	46095229	1	2	168	0	1	0	0	0	0	0	0	0	6661	261	9	5		5	GPBP1L1	1	46095229	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	619629	46095229	203155392	39	137030											
MAST2	23139	broad.mit.edu	37	chr1	46500535	46500536	+	Missense_Mutation	DNP	TT	AA	AA													aagagtgcggagccaccccgTtcaccactactcaagagggt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	46500536	AA	AA	46500535	3	1	168	1	0	0	0	0	1	0	0	0	9417	1712	60	5	4308	5	MAST2	1	46500535	Missense_Mutation	DNP	TT	TCGA-50-6590-01A-12D-1855-08	405306	46500535	202750086	40	137031											
LRRC41	10489	broad.mit.edu	37	chr1	46745230	46745230	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcatagcagcaaccatctCaggcagaaattgggctgggc	11	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46745230	G	G	46745230	3	3	168	1	0	0	0	0	1	0	0	0	9086	835	29	4	373	4	LRRC41	1	46745230	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	244695	46745230	202505391	41	137032											
LRRC41	10489	broad.mit.edu	37	chr1	46746159	46746159	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcagagaacccgaggccttCagaacggagcacagcagtgg	14	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46746159	T	T	46746159	2	4	168	1	0	0	0	0	0	0	0	1	9086	813	29	4		4	LRRC41	1	46746159	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	929	46746159	202504462	42	137033											
ZFYVE9	9372	broad.mit.edu	37	chr1	52703666	52703666	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataatgaaaacagacaaactGatcaatttagttttagtata	5	4	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52703666	A	A	52703666	3	1	168	1	0	0	0	0	1	0	0	0	17797	1290	45	4	583	4	ZFYVE9	1	52703666	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5957507	52703666	196546955	43	137034											
C8A	731	broad.mit.edu	37	chr1	57341792	57341792	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggactgccttgatggctCtgatgaggacgactgtgaag	14	9	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57341792	G	G	57341792	3	3	168	1	0	0	0	0	1	0	0	0	2441	913	32	4	388	4	C8A	1	57341792	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4638126	57341792	191908829	44	137035											
JAK1	3716	broad.mit.edu	37	chr1	65323402	65323402	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtcggtgcagctccacctCagcacgtacatcccctcctc	7	18	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65323402	G	G	65323402	2	3	168	1	0	0	0	0	0	0	0	1	8007	813	29	4		4	JAK1	1	65323402	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	7981610	65323402	183927219	45	137036											
PDE4B	5142	broad.mit.edu	37	chr1	66723040	66723040	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgctttgaattacagtactCtggatctgttatttaatggg	9	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66723040	A	A	66723040	1	1	168	0	1	0	0	0	0	0	0	0	11734	928	32	3		3	PDE4B	1	66723040	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1399638	66723040	182527581	46	137037											
PDE4B	5142	broad.mit.edu	37	chr1	66838395	66838395	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggagatgaacattctatcCttgatgagcatgccagctat	10	8	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66838395	T	T	66838395	1	4	168	0	1	0	0	0	0	0	0	0	11734	696	24	4		4	PDE4B	1	66838395	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	115355	66838395	182412226	47	137038											
LRRC7	57554	broad.mit.edu	37	chr1	70505161	70505161	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaacacccttcatatcaAgaagtgaaagctcaggcggg	11	9	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70505161	G	G	70505161	2	3	168	1	0	0	0	0	0	0	0	1	9107	69	3	5		5	LRRC7	1	70505161	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	3666766	70505161	178745460	48	137039											
LRRIQ3	127255	broad.mit.edu	37	chr1	74649349	74649349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgactggttagctcttctGtgactgttccatgaaacatc	8	10	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74649349	T	T	74649349	3	4	168	1	0	0	0	0	1	0	0	0	9117	1377	48	3	1882	3	LRRIQ3	1	74649349	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4144188	74649349	174601272	49	137040											
TNNI3K	51086	broad.mit.edu	37	chr1	74664034	74664035	+	Missense_Mutation	DNP	CG	GA	GA													cgaaaattgcggaggttttcCgagctaagaggtaccagaga							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	74664035	GA	GA	74664034	3	3	168	1	0	0	0	0	1	0	0	0	16452	639	23	4	74	4	TNNI3K	1	74664034	Missense_Mutation	DNP	CG	TCGA-50-6590-01A-12D-1855-08	14685	74664034	174586587	50	137041											
C1orf173	127254	broad.mit.edu	37	chr1	75037310	75037310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcggctgtctccgaacCtgccaacacctccctctcct	5	21	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037310	A	A	75037310	3	1	168	1	0	0	0	0	1	0	0	0	2034	681	24	2	512	2	C1orf173	1	75037310	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	373276	75037310	174213311	51	137042											
C1orf173	127254	broad.mit.edu	37	chr1	75037410	75037410	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcctcccatgccctcattCttttgtgtgtttccttctcc	4	17	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75037410	T	T	75037410	2	4	168	1	0	0	0	0	0	0	0	1	2034	912	32	4		4	C1orf173	1	75037410	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	100	75037410	174213211	52	137043											
C1orf173	127254	broad.mit.edu	37	chr1	75072350	75072350	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggttttcctttacttgtcAtttcctccacagcagttacc	5	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75072350	T	T	75072350	3	4	168	1	0	0	0	0	1	0	0	0	2034	217	8	5	3188	5	C1orf173	1	75072350	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	34940	75072350	174178271	53	137044											
C1orf173	127254	broad.mit.edu	37	chr1	75072517	75072517	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcttcagttcctctcctttCtcagtgctcttttctttcct	3	14	6	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75072517	A	A	75072517	3	1	168	1	0	0	0	0	1	0	0	0	2034	912	32	3	3355	3	C1orf173	1	75072517	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	167	75072517	174178104	54	137045											
LHX8	431707	broad.mit.edu	37	chr1	75608953	75608953	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggagtttgctttggtGgaagagaaagtcctctgcag	16	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75608953	T	T	75608953	2	4	168	1	0	0	0	0	0	0	0	1	8848	1335	47	2		2	LHX8	1	75608953	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	536436	75608953	173641668	55	137046											
SLC44A5	204962	broad.mit.edu	37	chr1	76107319	76107319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcacggttcaaaattgCataacaaggaagtaaaataa	9	5	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76107319	A	A	76107319	1	1	168	0	1	0	0	0	0	0	0	0	14753	725	25	3		3	SLC44A5	1	76107319	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	498366	76107319	173143302	56	137047											
MSH4	4438	broad.mit.edu	37	chr1	76347000	76347000	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaactatctgacactgtGtcaatgctggatatgctact	7	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76347000	T	T	76347000	2	4	168	1	0	0	0	0	0	0	0	1	9966	1364	48	3		3	MSH4	1	76347000	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	239681	76347000	172903621	57	137048											
ELTD1	64123	broad.mit.edu	37	chr1	79383618	79383619	+	Nonsense_Mutation	DNP	CC	AA	AA													aaaattcttgtgcaaaaatcCcttgttgtagatgacaccca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	79383619	AA	AA	79383618	4	1	168	1	0	0	0	0	0	1	0	0	5126	632	22	2	513	2	ELTD1	1	79383618	Nonsense_Mutation	DNP	CC	TCGA-50-6590-01A-12D-1855-08	3036618	79383618	169867003	58	137049											
LPHN2	23266	broad.mit.edu	37	chr1	82432322	82432322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtatgctaatgaagtaatGgaaggttataaaagcagaaa	10	2	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82432322	T	T	82432322	1	4	168	0	1	0	0	0	0	0	0	0	9003	1363	47	2		2	LPHN2	1	82432322	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3048704	82432322	166818299	59	137050											
LPHN2	23266	broad.mit.edu	37	chr1	82452676	82452676	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcgctgaaacagttgtAtgtaatgccccttcagctcc	8	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82452676	T	T	82452676	1	4	168	0	1	0	0	0	0	0	0	0	9003	464	16	5		5	LPHN2	1	82452676	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	20354	82452676	166797945	60	137051											
LPHN2	23266	broad.mit.edu	37	chr1	82452992	82452992	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggactgacatcacatggtctGagagcccatcttcaagattt	9	10	4	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82452992	T	T	82452992	1	4	168	0	1	0	0	0	0	0	0	0	9003	1305	45	3		3	LPHN2	1	82452992	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	316	82452992	166797629	61	137052											
CLCA1	1179	broad.mit.edu	37	chr1	86952403	86952403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagcttcaggagggacGtccatctgcagcgggcttcg	15	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86952403	T	T	86952403	2	4	168	1	0	0	0	0	0	0	0	1	3488	1132	40	3		3	CLCA1	1	86952403	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	4499411	86952403	162298218	62	137053											
CLCA4	22802	broad.mit.edu	37	chr1	87025857	87025858	+	Intron	INS	-	T	T													actgaatattatcttttttaINStttttgatgtttgacaatct							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87025858	T	T	87025857	6	5	168	0	1	1	1	0	0	0	0	0	3490	464	16	0		0	CLCA4	1	87025857	Intron	INS	-	TCGA-50-6590-01A-12D-1855-08	73454	87025857	162224764	63	137054											
GBP1	2633	broad.mit.edu	37	chr1	89521892	89521892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtttacaaaagtcatccCgctttttttctagctgggcc	7	11	3	0	rs139042305		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89521892	T	T	89521892	3	4	168	1	0	0	0	0	1	0	0	0	6335	652	23	4	619	4	GBP1	1	89521892	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2496035	89521892	159728729	64	137055											
GBP7	388646	broad.mit.edu	37	chr1	89616169	89616169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttttttgtcatttattgGccggtcaaagacaaagcact	9	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89616169	T	T	89616169	3	4	168	1	0	0	0	0	1	0	0	0	6341	1203	42	3	1225	3	GBP7	1	89616169	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	94277	89616169	159634452	65	137056											
HFM1	164045	broad.mit.edu	37	chr1	91859777	91859777	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatatttctgagaagcatAtgtcagcttgccagcaatat	7	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91859777	G	G	91859777	3	3	168	1	0	0	0	0	1	0	0	0	7150	449	16	5	4084	5	HFM1	1	91859777	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2243608	91859777	157390844	66	137057											
BRDT	676	broad.mit.edu	37	chr1	92457919	92457919	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggggaagaaatggtttacAtatagattaggggcttactt	12	4	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92457919	G	G	92457919	1	3	168	0	1	0	0	0	0	0	0	0	1517	232	8	5		5	BRDT	1	92457919	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	598142	92457919	156792702	67	137058											
PTBP2	58155	broad.mit.edu	37	chr1	97235307	97235307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagaagataaaatggatgGtgctccttctcgtgtacttc	11	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97235307	C	C	97235307	3	2	168	1	0	0	0	0	1	0	0	0	12832	1261	44	4	178	4	PTBP2	1	97235307	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4777388	97235307	152015314	68	137059											
LPPR4	9890	broad.mit.edu	37	chr1	99771394	99771394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaattgctcatacagaaGgcatcctcaaccgaaaccac	7	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771394	T	T	99771394	3	4	168	1	0	0	0	0	1	0	0	0	9014	1000	35	2	1146	2	LPPR4	1	99771394	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2536087	99771394	149479227	69	137060											
COL11A1	1301	broad.mit.edu	37	chr1	103412485	103412485	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaattgggccagctgtacCtgctgacccacgttctcctg	9	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103412485	T	T	103412485	3	4	168	1	0	0	0	0	1	0	0	0	3699	681	24	4	2328	4	COL11A1	1	103412485	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3641091	103412485	145838136	70	137061											
COL11A1	1301	broad.mit.edu	37	chr1	103428152	103428152	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagacaaggggtgagtaTagttaaacataaattaaagt	10	3	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103428152	C	C	103428152	1	2	168	0	1	0	0	0	0	0	0	0	3699	1421	49	5		5	COL11A1	1	103428152	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	15667	103428152	145822469	71	137062											
NTNG1	22854	broad.mit.edu	37	chr1	107867256	107867256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggatttatcacagcataCggtcttagaaatcatttgca	8	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107867256	A	A	107867256	3	1	168	1	0	0	0	0	1	0	0	0	10799	536	19	3	605	3	NTNG1	1	107867256	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4439104	107867256	141383365	72	137063											
NTNG1	22854	broad.mit.edu	37	chr1	107963809	107963809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatttcatggtgttatgtGttgtgaaacattgcactgta	11	4	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107963809	T	T	107963809	1	4	168	0	1	0	0	0	0	0	0	0	10799	1392	48	3		3	NTNG1	1	107963809	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	96553	107963809	141286812	73	137064											
VAV3	10451	broad.mit.edu	37	chr1	108315512	108315512	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttctattatgcagtaaAtgcaatagctacaaatagcc	5	8	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108315512	G	G	108315512	1	3	168	0	1	0	0	0	0	0	0	0	17260	116	4	5		5	VAV3	1	108315512	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	351703	108315512	140935109	74	137065											
PSMA5	5686	broad.mit.edu	37	chr1	109968974	109968974	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgagggtaggaggaggcagCggctacgcggggattctgag	21	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109968974	G	G	109968974	1	3	168	0	1	0	0	0	0	0	0	0	12776	783	27	4		4	PSMA5	1	109968974	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	1653462	109968974	139281647	75	137066											
KCNA2	3737	broad.mit.edu	37	chr1	111146418	111146418	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaaagaatatcaggagGcccaattctctcatgctggc	10	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111146418	T	T	111146418	2	4	168	1	0	0	0	0	0	0	0	1	8073	1190	42	3		3	KCNA2	1	111146418	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1177444	111146418	138104203	76	137067											
KCNA3	3738	broad.mit.edu	37	chr1	111216069	111216070	+	Missense_Mutation	DNP	TG	AT	AT													tcccacaatcttgccccctaTggtcactgggtgcatatcgc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	111216070	AT	AT	111216069	3	1	168	1	0	0	0	0	1	0	0	0	8074	1464	51	5	368	5	KCNA3	1	111216069	Missense_Mutation	DNP	TG	TCGA-50-6590-01A-12D-1855-08	69651	111216069	138034552	77	137068											
KCNA3	3738	broad.mit.edu	37	chr1	111216142	111216142	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagaaggcatccgggatGctgctgaaacctgaagtggg	14	10	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111216142	A	A	111216142	2	1	168	1	0	0	0	0	0	0	0	1	8074	1310	46	4		4	KCNA3	1	111216142	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	73	111216142	138034479	78	137069											
C1orf103	55791	broad.mit.edu	37	chr1	111492511	111492511	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcaccataaactctgtctCtttgtaagtaccactcttta	3	12	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111492511	G	G	111492511	3	3	168	1	0	0	0	0	1	0	0	0	1997	922	32	4	486	4	C1orf103	1	111492511	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	276369	111492511	137758110	79	137070											
HIPK1	204851	broad.mit.edu	37	chr1	114515703	114515703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagcaacccagcccccCgcaggcagcaggcgtttgtg	13	15	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114515703	A	A	114515703	3	1	168	1	0	0	0	0	1	0	0	0	7183	652	23	1	3362	1	HIPK1	1	114515703	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3023192	114515703	134734918	80	137071											
TSPAN2	10100	broad.mit.edu	37	chr1	115603136	115603136	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggttacttcagcagcaaaTatcaccaggaggcaggtaaa	11	8	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115603136	C	C	115603136	3	2	168	1	0	0	0	0	1	0	0	0	16769	1396	49	5	391	5	TSPAN2	1	115603136	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1087433	115603136	133647485	81	137072											
CD2	914	broad.mit.edu	37	chr1	117303199	117303199	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtgcaaaattcaagtgCacagcagggaacaaagtcag	11	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117303199	T	T	117303199	2	4	168	1	0	0	0	0	0	0	0	1	3009	718	25	4		4	CD2	1	117303199	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1700063	117303199	131947422	82	137073											
SPAG17	200162	broad.mit.edu	37	chr1	118530450	118530450	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttatgtgcgttttggggtaTaattacctcgttttgtctat	9	6	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118530450	A	A	118530450	1	1	168	0	1	0	0	0	0	0	0	0	15095	1421	49	5		5	SPAG17	1	118530450	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1227251	118530450	130720171	83	137074											
SPAG17	200162	broad.mit.edu	37	chr1	118535301	118535301	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaagcaataacaccacCaaagaaatcagaatgttttc	4	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118535301	A	A	118535301	1	1	168	0	1	0	0	0	0	0	0	0	15095	609	21	2		2	SPAG17	1	118535301	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4851	118535301	130715320	84	137075											
SPAG17	200162	broad.mit.edu	37	chr1	118583391	118583391	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccacttcaatctgccccCcatcagaaggatacaggtag	7	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118583391	T	T	118583391	3	4	168	1	0	0	0	0	1	0	0	0	15095	623	22	4	3651	4	SPAG17	1	118583391	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	48090	118583391	130667230	85	137076											
WARS2	10352	broad.mit.edu	37	chr1	119628304	119628304	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaaaattgtcaatggccaGaattgtgctcctctggtctt	8	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119628304	A	A	119628304	1	1	168	0	1	0	0	0	0	0	0	0	17377	957	33	4		4	WARS2	1	119628304	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1044913	119628304	129622317	86	137077											
NBPF7	343505	broad.mit.edu	37	chr1	120377484	120377484	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagaaaagctactttttgTgacatcctttcatccttttc	5	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120377484	A	A	120377484	2	1	168	1	0	0	0	0	0	0	0	1	10293	1683	59	5		5	NBPF7	1	120377484	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	749180	120377484	128873137	87	137078											
NBPF7	343505	broad.mit.edu	37	chr1	120379909	120379909	+	Frame_Shift_Del	DEL	C	-	-													tgtcactattgaactaacagCccacaaatccacagagttac							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120379909	-	-	120379909	7	5	168	1	0	1	0	1	0	0	0	0	10293	726	26	0	364	0	NBPF7	1	120379909	Frame_Shift_Del	DEL	C	TCGA-50-6590-01A-12D-1855-08	2425	120379909	128870712	88	137079											
NOTCH2	4853	broad.mit.edu	37	chr1	120547953	120547953	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttggtctcattagttaccTgtaaacccgacttgacaggt	8	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120547953	A	A	120547953	2	1	168	1	0	0	0	0	0	0	0	1	10643	1594	55	5		5	NOTCH2	1	120547953	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	168044	120547953	128702668	89	137080											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874005	144874005	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttagaagacaacacagcaGaatgactcgaatgatggatg	11	6	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144874005	C	C	144874005	3	2	168	1	0	0	0	0	1	0	0	0	11737	942	33	4	2144	4	PDE4DIP	1	144874005	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	24326052	144874005	104376616	90	137081											
NBPF10	100132406	broad.mit.edu	37	chr1	145311775	145311775	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttattctttactttttccTacttttccacgctcagcagg	5	12	2	0	rs59196149	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145311775	C	C	145311775	1	2	168	0	1	0	0	0	0	0	0	0	10287	1537	53	5		5	NBPF10	1	145311775	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	437770	145311775	103938846	91	137082											
NBPF10	100132406	broad.mit.edu	37	chr1	146253007	146253007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattttcatatgttaccacCcattacttgctcctgagtat	4	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146253007	A	A	146253007	1	1	168	0	1	0	0	0	0	0	0	0	10287	638	22	2		2	NBPF10	1	146253007	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	941232	146253007	102997614	92	137083											
NBPF10	100132406	broad.mit.edu	37	chr1	146399658	146399658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactcaggagcaagtaatgGgtggtaacatatgaaaatgt	11	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146399658	T	T	146399658	1	4	168	0	1	0	0	0	0	0	0	0	10287	1247	43	2		2	NBPF10	1	146399658	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	146651	146399658	102850963	93	137084											
NBPF14	25832	broad.mit.edu	37	chr1	148015775	148015775	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagacttcaggccctttctCatccagcagctctctgctga	7	15	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148015775	T	T	148015775	3	4	168	1	0	0	0	0	1	0	0	0	10289	835	29	4	1969	4	NBPF14	1	148015775	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1616117	148015775	101234846	94	137085											
LOC200030	200030	broad.mit.edu	37	chr1	148016460	148016461	+	Splice_Site	DNP	CC	AA	AA													tcacttgatcccaccgatgtCctgcaaataaattcagatgg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	148016461	AA	AA	148016460	5	1	168	1	0	0	0	0	0	0	1	0	8950	869	30	3		3	LOC200030	1	148016460	Splice_Site	DNP	CC	TCGA-50-6590-01A-12D-1855-08	685	148016460	101234161	95	137086											
LOC200030	200030	broad.mit.edu	37	chr1	148346594	148346594	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttactgtatttcttctGctggttggccaggaagccgg	12	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148346594	A	A	148346594	4	1	168	1	0	0	0	0	0	1	0	0	8950	1334	46	4		4	LOC200030	1	148346594	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	330134	148346594	100904027	96	137087											
HIST2H2BE	8349	broad.mit.edu	37	chr1	149857906	149857906	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcaggcgcacggccgtctgGatctcgcgggatgtgatggt	17	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149857906	C	C	149857906	3	2	168	1	0	0	0	0	1	0	0	0	7246	1164	41	4	99	4	HIST2H2BE	1	149857906	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1511312	149857906	99392715	97	137088											
SF3B4	10262	broad.mit.edu	37	chr1	149895850	149895850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagagcctgggggtccagCgtggggatgtcctaagccat	15	12	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149895850	A	A	149895850	3	1	168	1	0	0	0	0	1	0	0	0	14266	768	27	3	312	3	SF3B4	1	149895850	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	37944	149895850	99354771	98	137089											
PLEKHO1	51177	broad.mit.edu	37	chr1	150123304	150123304	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atagcccccactttgtcactCcccaagggctcgcctagctt	7	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150123304	A	A	150123304	1	1	168	0	1	0	0	0	0	0	0	0	12179	870	30	3		3	PLEKHO1	1	150123304	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	227454	150123304	99127317	99	137090											
PRPF3	9129	broad.mit.edu	37	chr1	150310579	150310579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaattgagattctacaCattctgttttctatgactcc	4	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150310579	A	A	150310579	1	1	168	0	1	0	0	0	0	0	0	0	12671	493	17	3		3	PRPF3	1	150310579	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	187275	150310579	98940042	100	137091											
PRPF3	9129	broad.mit.edu	37	chr1	150321807	150321807	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaataatgttttaaataAtttatgtttctttttggaat	6	1	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150321807	G	G	150321807	1	3	168	0	1	0	0	0	0	0	0	0	12671	116	4	5		5	PRPF3	1	150321807	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	11228	150321807	98928814	101	137092											
CTSK	1513	broad.mit.edu	37	chr1	150776582	150776582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattggtcatgtagccccctCcacagccatcattctcagac	6	16	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150776582	A	A	150776582	3	1	168	1	0	0	0	0	1	0	0	0	4071	855	30	3	472	3	CTSK	1	150776582	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	454775	150776582	98474039	102	137093											
ZNF687	57592	broad.mit.edu	37	chr1	151259784	151259784	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaccattaaaacatcctgCgggaatatcacaaggactgt	8	9	1	1	rs141982116		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151259784	T	T	151259784	2	4	168	1	0	0	0	0	0	0	0	1	18219	776	27	4		4	ZNF687	1	151259784	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	483202	151259784	97990837	103	137094											
RPTN	126638	broad.mit.edu	37	chr1	152129396	152129396	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctcggtcttgatctaagAggttcaagatggtttccaca	9	9	4	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152129396	G	G	152129396	3	3	168	1	0	0	0	0	1	0	0	0	13775	304	11	5	2179	5	RPTN	1	152129396	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	869612	152129396	97121225	104	137095											
FLG	2312	broad.mit.edu	37	chr1	152277574	152277574	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgcagagtgcccgtgaCcggctctgtcttcgtgatgg	15	11	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152277574	T	T	152277574	3	4	168	1	0	0	0	0	1	0	0	0	5979	507	18	4	2401	4	FLG	1	152277574	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	148178	152277574	96973047	105	137096											
SPRR2E	6704	broad.mit.edu	37	chr1	153066232	153066232	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttgataagacatcctgCtggagtctcagaatctgaaa	10	8	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153066232	A	A	153066232	1	1	168	0	1	0	0	0	0	0	0	0	15218	812	28	3		3	SPRR2E	1	153066232	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	788658	153066232	96184389	106	137097											
INTS3	65123	broad.mit.edu	37	chr1	153736716	153736716	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtaaggctgattttccctCactccagagcctcaggagcc	10	13	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153736716	A	A	153736716	1	1	168	0	1	0	0	0	0	0	0	0	7849	841	29	3		3	INTS3	1	153736716	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	670484	153736716	95513905	107	137098											
ASH1L	55870	broad.mit.edu	37	chr1	155449401	155449401	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagtaatgggggaagaatcTgtcctaatgctgacccagct	12	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155449401	A	A	155449401	3	1	168	1	0	0	0	0	1	0	0	0	1045	1580	55	5	5738	5	ASH1L	1	155449401	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1712685	155449401	93801220	108	137099											
GON4L	54856	broad.mit.edu	37	chr1	155741067	155741067	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttccttctaaagggtctcCccagactaacacattttaca	4	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155741067	G	G	155741067	1	3	168	0	1	0	0	0	0	0	0	0	6636	638	22	4		4	GON4L	1	155741067	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	291666	155741067	93509554	109	137100											
UBQLN4	56893	broad.mit.edu	37	chr1	156012438	156012438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcttaactcacacagctGggaagcagcagagcttggga	12	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156012438	T	T	156012438	1	4	168	0	1	0	0	0	0	0	0	0	17025	1363	47	2		2	UBQLN4	1	156012438	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	271371	156012438	93238183	110	137101											
SMG5	23381	broad.mit.edu	37	chr1	156244369	156244369	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taacccaaaacagagaaaatGaaaggtgcaaattcttacac	6	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156244369	A	A	156244369	1	1	168	0	1	0	0	0	0	0	0	0	14910	1305	45	4		4	SMG5	1	156244369	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	231931	156244369	93006252	111	137102											
SMG5	23381	broad.mit.edu	37	chr1	156244567	156244567	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccgagatgtagagactaaGaatccagggccagtcttgga	12	9	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156244567	A	A	156244567	1	1	168	0	1	0	0	0	0	0	0	0	14910	957	33	4		4	SMG5	1	156244567	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	198	156244567	93006054	112	137103											
VHLL	391104	broad.mit.edu	37	chr1	156269023	156269023	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggcctgcccataccagttCttaaagagactacttccgtt	8	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156269023	G	G	156269023	1	3	168	0	1	0	0	0	0	0	0	0	17290	928	32	4		4	VHLL	1	156269023	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	24456	156269023	92981598	113	137104											
C1orf61	10485	broad.mit.edu	37	chr1	156386678	156386678	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaacaaatcatatgctatCagtctttccaaactgtagcc	5	10	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156386678	G	G	156386678	1	3	168	0	1	0	0	0	0	0	0	0	2074	841	29	4		4	C1orf61	1	156386678	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	117655	156386678	92863943	114	137105											
BCAN	63827	broad.mit.edu	37	chr1	156622018	156622018	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagacgctgtccctggtgctGaaccgtttgtgctttgccta	11	12	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156622018	A	A	156622018	1	1	168	0	1	0	0	0	0	0	0	0	1350	1305	45	4		4	BCAN	1	156622018	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	235340	156622018	92628603	115	137106											
BCAN	63827	broad.mit.edu	37	chr1	156628514	156628514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccccagatctcctgtgtgCccagaagacctgtgagtgcc	10	16	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156628514	A	A	156628514	3	1	168	1	0	0	0	0	1	0	0	0	1350	739	26	3	2737	3	BCAN	1	156628514	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	6496	156628514	92622107	116	137107											
FCRL2	79368	broad.mit.edu	37	chr1	157737387	157737387	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggctcagcaaagggccTggccccatggctgttgcata	13	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157737387	A	A	157737387	1	1	168	0	1	0	0	0	0	0	0	0	5852	1595	55	5		5	FCRL2	1	157737387	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1108873	157737387	91513234	117	137108											
KIRREL	55243	broad.mit.edu	37	chr1	158046019	158046019	+	Frame_Shift_Del	DEL	G	-	-													ttgtgcaatggaccaaggacGggctggccctgggcatgggc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158046019	-	-	158046019	7	5	168	1	0	1	0	1	0	0	0	0	8395	1116	39	0	175	0	KIRREL	1	158046019	Frame_Shift_Del	DEL	G	TCGA-50-6590-01A-12D-1855-08	308632	158046019	91204602	118	137109											
OR10K2	391107	broad.mit.edu	37	chr1	158390407	158390407	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcttctgggacagcaggtCaaccagcatcttgggtacaa	10	11	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158390407	A	A	158390407	3	1	168	1	0	0	0	0	1	0	0	0	11008	826	29	3	690	3	OR10K2	1	158390407	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	344388	158390407	90860214	119	137110											
SPTA1	6708	broad.mit.edu	37	chr1	158584192	158584192	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaggaattttaatggacAatttgctatttgagtcatct	9	4	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158584192	G	G	158584192	1	3	168	0	1	0	0	0	0	0	0	0	15234	145	5	5		5	SPTA1	1	158584192	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	193785	158584192	90666429	120	137111											
SPTA1	6708	broad.mit.edu	37	chr1	158589210	158589210	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttgtaggcttaactgcatAtctttcctctctcaagtcta	6	10	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158589210	G	G	158589210	1	3	168	0	1	0	0	0	0	0	0	0	15234	464	16	5		5	SPTA1	1	158589210	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	5018	158589210	90661411	121	137112											
SPTA1	6708	broad.mit.edu	37	chr1	158614185	158614185	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcacagttcccctggaacAtctatgaggaatcaaatgag	9	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158614185	G	G	158614185	3	3	168	1	0	0	0	0	1	0	0	0	15234	231	8	5	3155	5	SPTA1	1	158614185	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	24975	158614185	90636436	122	137113											
SPTA1	6708	broad.mit.edu	37	chr1	158650425	158650425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaactctcccttctttaGctaccagctccacttggaag	5	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158650425	T	T	158650425	3	4	168	1	0	0	0	0	1	0	0	0	15234	971	34	3	6825	3	SPTA1	1	158650425	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	36240	158650425	90600196	123	137114											
OR6K2	81448	broad.mit.edu	37	chr1	158670237	158670237	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggtataccaaatctccAggaaagaaagagcactgata	9	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158670237	T	T	158670237	3	4	168	1	0	0	0	0	1	0	0	0	11296	188	7	5	772	5	OR6K2	1	158670237	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	19812	158670237	90580384	124	137115											
MNDA	4332	broad.mit.edu	37	chr1	158817535	158817535	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaaagcgtacacaagaaGaacacaatttatgaaataca	6	7	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158817535	T	T	158817535	3	4	168	1	0	0	0	0	1	0	0	0	9770	933	33	3	1023	3	MNDA	1	158817535	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	147298	158817535	90433086	125	137116											
FCER1A	2205	broad.mit.edu	37	chr1	159274015	159274015	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacagatctctcatgtgaggGatggctcatctgaagatggg	13	7	4	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159274015	C	C	159274015	1	2	168	0	1	0	0	0	0	0	0	0	5831	1189	41	4		4	FCER1A	1	159274015	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	456480	159274015	89976606	126	137117											
OR10J1	26476	broad.mit.edu	37	chr1	159410333	159410333	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgtggtcattgtccactAcagctgtgcctccattgcct	8	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159410333	G	G	159410333	3	3	168	1	0	0	0	0	1	0	0	0	11004	391	14	5	787	5	OR10J1	1	159410333	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	136318	159410333	89840288	127	137118											
PIGM	93183	broad.mit.edu	37	chr1	160000856	160000856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaacagcagcacagccCgattacacagccttttcagg	7	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160000856	A	A	160000856	3	1	168	1	0	0	0	0	1	0	0	0	11987	652	23	1	601	1	PIGM	1	160000856	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	590523	160000856	89249765	128	137119											
IGSF8	93185	broad.mit.edu	37	chr1	160064700	160064700	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtagctgcccaggtagcggGtatcagtggagggggtgtgg	20	6	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160064700	A	A	160064700	3	1	168	1	0	0	0	0	1	0	0	0	7674	1261	44	4	1460	4	IGSF8	1	160064700	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	63844	160064700	89185921	129	137120											
ATP1A4	480	broad.mit.edu	37	chr1	160141450	160141450	+	Missense_Mutation	SNP	T	G	G													agatgaaataaatttccccaTggacaacctttgttttgtgg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160141450	G	G	160141450	3	3	168	1	0	0	0	0	1	0	0	0	1135	1464	51	5	1803	5	ATP1A4	1	160141450	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	76750	160141450	89109171	130	137121	587	2									
ATP1A4	480	broad.mit.edu	37	chr1	160141452	160141452	+	Missense_Mutation	SNP	G	A	A													atgaaataaatttccccatgGacaacctttgttttgtgggc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160141452	A	A	160141452	3	1	168	1	0	0	0	0	1	0	0	0	1135	1174	41	4	1805	4	ATP1A4	1	160141452	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2	160141452	89109169	131	137122	587	2									
LY9	4063	broad.mit.edu	37	chr1	160765910	160765910	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcatatacacatgcagaaGctgtgacacgtgcggaagct	10	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160765910	A	A	160765910	1	1	168	0	1	0	0	0	0	0	0	0	9189	986	34	4		4	LY9	1	160765910	5'Flank	SNP	G	TCGA-50-6590-01A-12D-1855-08	624458	160765910	88484711	132	137123											
MAEL	84944	broad.mit.edu	37	chr1	166985562	166985562	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttcataatactgtattctGattaaattattctgtgccgt	5	7	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166985562	C	C	166985562	1	2	168	0	1	0	0	0	0	0	0	0	9242	1305	45	4		4	MAEL	1	166985562	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6219652	166985562	82265059	133	137124											
DUSP27	92235	broad.mit.edu	37	chr1	167083011	167083011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacccattcacctctcctcaGccattgcagccaaacagatc	4	17	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167083011	T	T	167083011	3	4	168	1	0	0	0	0	1	0	0	0	4864	971	34	3	181	3	DUSP27	1	167083011	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	97449	167083011	82167610	134	137125											
POU2F1	5451	broad.mit.edu	37	chr1	167341087	167341087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgattcctaaaagatgGggttttaagtacatttcttt	7	4	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167341087	T	T	167341087	1	4	168	0	1	0	0	0	0	0	0	0	12367	1247	43	2		2	POU2F1	1	167341087	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	258076	167341087	81909534	135	137126											
RCSD1	92241	broad.mit.edu	37	chr1	167663339	167663339	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcttttcttgacaggccAatttaacctttgacccagct	5	12	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167663339	T	T	167663339	3	4	168	1	0	0	0	0	1	0	0	0	13293	130	5	5	292	5	RCSD1	1	167663339	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	322252	167663339	81587282	136	137127											
DCAF6	55827	broad.mit.edu	37	chr1	168013998	168013998	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctatagttagaggccatgttCaagtgtattgtggaagtttc	11	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168013998	G	G	168013998	1	3	168	0	1	0	0	0	0	0	0	0	4307	841	29	4		4	DCAF6	1	168013998	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	350659	168013998	81236623	137	137128											
BLZF1	8548	broad.mit.edu	37	chr1	169338845	169338845	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttatgacgatgtgaaggAacgtttgagccagataacta	10	6	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169338845	T	T	169338845	1	4	168	0	1	0	0	0	0	0	0	0	1459	261	9	5		5	BLZF1	1	169338845	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1324847	169338845	79911776	138	137129											
SELE	6401	broad.mit.edu	37	chr1	169702805	169702805	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcttgaaatactttcctgGggagataaaacacaaaatga	9	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169702805	C	C	169702805	1	2	168	0	1	0	0	0	0	0	0	0	14126	1247	43	4		4	SELE	1	169702805	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	363960	169702805	79547816	139	137130											
PRRX1	5396	broad.mit.edu	37	chr1	170689119	170689119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaactgtttaaaaacaCaaattatagcccagcacagt	5	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170689119	A	A	170689119	1	1	168	0	1	0	0	0	0	0	0	0	12718	493	17	3		3	PRRX1	1	170689119	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	986314	170689119	78561502	140	137131											
C1orf129	80133	broad.mit.edu	37	chr1	170934323	170934323	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggatgagtaaagatagctCatatctgcaagagagaataa	11	4	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170934323	A	A	170934323	4	1	168	1	0	0	0	0	0	1	0	0	2016	838	29	3	429	3	C1orf129	1	170934323	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	245204	170934323	78316298	141	137132											
C1orf129	80133	broad.mit.edu	37	chr1	170965683	170965683	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgagagttctgctgaattGttctggactgcaacaggtgg	13	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170965683	A	A	170965683	3	1	168	1	0	0	0	0	1	0	0	0	2016	1377	48	4	1423	4	C1orf129	1	170965683	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	31360	170965683	78284938	142	137133											
FMO3	2328	broad.mit.edu	37	chr1	171079894	171079894	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctcaccagaatatccaCtacaaatggtcactaatttc	6	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171079894	G	G	171079894	1	3	168	0	1	0	0	0	0	0	0	0	6014	580	20	4		4	FMO3	1	171079894	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	114211	171079894	78170727	143	137134											
FMO1	2326	broad.mit.edu	37	chr1	171227270	171227270	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagctggggtcagcggccTggcctccatcaagtgctgtc	16	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171227270	A	A	171227270	3	1	168	1	0	0	0	0	1	0	0	0	6012	1580	55	5	46	5	FMO1	1	171227270	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	147376	171227270	78023351	144	137135											
C1orf9	51430	broad.mit.edu	37	chr1	172558474	172558474	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagaaatcaatcccttgCctaaaatagaagtatctgag	6	11	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172558474	T	T	172558474	3	4	168	1	0	0	0	0	1	0	0	0	2089	739	26	4	2303	4	C1orf9	1	172558474	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1331204	172558474	76692147	145	137136											
TNFSF18	8995	broad.mit.edu	37	chr1	173010504	173010504	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgaggagatcaaatcaagTctctaggagatgaattgggg	13	4	3	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173010504	A	A	173010504	1	1	168	0	1	0	0	0	0	0	0	0	16432	1682	58	5		5	TNFSF18	1	173010504	3'UTR	SNP	T	TCGA-50-6590-01A-12D-1855-08	452030	173010504	76240117	146	137137											
TNFSF18	8995	broad.mit.edu	37	chr1	173010824	173010824	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacgcaaggaggttcagaagAtgccatttgccattttgagg	12	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173010824	T	T	173010824	3	4	168	1	0	0	0	0	1	0	0	0	16432	333	12	5	320	5	TNFSF18	1	173010824	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	320	173010824	76239797	147	137138											
SLC9A11	284525	broad.mit.edu	37	chr1	173470159	173470159	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtatttgagcgaggaaagtAgtttggtctttaacctgact	11	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173470159	T	T	173470159	1	4	168	0	1	0	0	0	0	0	0	0	14825	435	15	5		5	SLC9A11	1	173470159	3'UTR	SNP	A	TCGA-50-6590-01A-12D-1855-08	459335	173470159	75780462	148	137139											
SERPINC1	462	broad.mit.edu	37	chr1	173876436	173876436	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggagggaaggcagaacaatCacaccatgaaggttttggag	15	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173876436	G	G	173876436	1	3	168	0	1	0	0	0	0	0	0	0	14222	841	29	4		4	SERPINC1	1	173876436	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	406277	173876436	75374185	149	137140											
RC3H1	149041	broad.mit.edu	37	chr1	173915621	173915621	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctaggctggtacctctagtCcacgtagctgggtctgctgg	13	11	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173915621	T	T	173915621	3	4	168	1	0	0	0	0	1	0	0	0	13274	855	30	4	463	4	RC3H1	1	173915621	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	39185	173915621	75335000	150	137141											
TNN	63923	broad.mit.edu	37	chr1	175046618	175046618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctctgtgctcctggtgGcttcggccccagccactctg	12	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175046618	T	T	175046618	3	4	168	1	0	0	0	0	1	0	0	0	16446	1203	42	3	66	3	TNN	1	175046618	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1130997	175046618	74204003	151	137142											
TNN	63923	broad.mit.edu	37	chr1	175046880	175046880	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtgtccaggacctccTggcccgggtgaagaagctgg	16	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175046880	A	A	175046880	3	1	168	1	0	0	0	0	1	0	0	0	16446	1580	55	5	328	5	TNN	1	175046880	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	262	175046880	74203741	152	137143											
TNN	63923	broad.mit.edu	37	chr1	175048462	175048462	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctactgtttctcctctccCtcccagatctaagccgccac	4	19	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175048462	T	T	175048462	1	4	168	0	1	0	0	0	0	0	0	0	16446	696	24	4		4	TNN	1	175048462	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1582	175048462	74202159	153	137144											
TNN	63923	broad.mit.edu	37	chr1	175048554	175048554	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcagggagggccccgcCtgcgagcggctggcctgccc	19	15	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175048554	T	T	175048554	2	4	168	1	0	0	0	0	0	0	0	1	16446	668	24	4		4	TNN	1	175048554	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	92	175048554	74202067	154	137145											
TNR	7143	broad.mit.edu	37	chr1	175328854	175328854	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtagcaatcagatccacAgggttgtccatggctgaaac	11	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175328854	G	G	175328854	2	3	168	1	0	0	0	0	0	0	0	1	16461	175	7	5		5	TNR	1	175328854	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	280300	175328854	73921767	155	137146											
TNR	7143	broad.mit.edu	37	chr1	175331736	175331736	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagaacctttctacaagcccGaacaacttcacccagatctt	4	15	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175331736	A	A	175331736	1	1	168	0	1	0	0	0	0	0	0	0	16461	1073	37	4		4	TNR	1	175331736	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2882	175331736	73918885	156	137147											
RFWD2	64326	broad.mit.edu	37	chr1	175956158	175956158	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggtctttgtcgagaacaCttttgactgtatcaaactta	7	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175956158	T	T	175956158	3	4	168	1	0	0	0	0	1	0	0	0	13368	565	20	4	153	4	RFWD2	1	175956158	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	624422	175956158	73294463	157	137148											
PAPPA2	60676	broad.mit.edu	37	chr1	176525707	176525707	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactacctaaggccctacccCgtgggggagcaagaaatcca	10	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176525707	T	T	176525707	2	4	168	1	0	0	0	0	0	0	0	1	11527	639	23	4		4	PAPPA2	1	176525707	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	569549	176525707	72724914	158	137149											
FAM20B	9917	broad.mit.edu	37	chr1	179033164	179033164	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgtcacactttggcttcCagatgtgtggcctctgcaga	10	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179033164	T	T	179033164	3	4	168	1	0	0	0	0	1	0	0	0	5585	594	21	4	691	4	FAM20B	1	179033164	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2507457	179033164	70217457	159	137150											
C1orf125	126859	broad.mit.edu	37	chr1	179348612	179348612	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcaggtttggagtgttaTgatgagtgagtactatgata	13	2	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179348612	C	C	179348612	2	2	168	1	0	0	0	0	0	0	0	1	2013	1471	51	5		5	C1orf125	1	179348612	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	315448	179348612	69902009	160	137151											
QSOX1	5768	broad.mit.edu	37	chr1	180166391	180166391	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccaggttcccctgctgtgCagggagggcagccccgggca	16	14	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180166391	T	T	180166391	1	4	168	0	1	0	0	0	0	0	0	0	12991	725	25	4		4	QSOX1	1	180166391	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	817779	180166391	69084230	161	137152											
XPR1	9213	broad.mit.edu	37	chr1	180832785	180832785	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttaattagtgttattaatGaaaaattttacttaaatgta	4	1	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180832785	C	C	180832785	1	2	168	0	1	0	0	0	0	0	0	0	17578	1305	45	4		4	XPR1	1	180832785	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	666394	180832785	68417836	162	137153											
CACNA1E	777	broad.mit.edu	37	chr1	181691074	181691074	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaccagcatttgaggaggCattggtggtggtggtgctag	18	5	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181691074	T	T	181691074	1	4	168	0	1	0	0	0	0	0	0	0	2568	725	25	4		4	CACNA1E	1	181691074	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	858289	181691074	67559547	163	137154											
CACNA1E	777	broad.mit.edu	37	chr1	181707533	181707533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttgactatgtgttcacgGgcgtgttcacctttgagatg	11	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181707533	A	A	181707533	3	1	168	1	0	0	0	0	1	0	0	0	2568	1232	43	4	3677	4	CACNA1E	1	181707533	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	16459	181707533	67543088	164	137155											
CACNA1E	777	broad.mit.edu	37	chr1	181725136	181725136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaagatggaggtgaaggGccgggaatggaagcgccatg	17	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181725136	T	T	181725136	3	4	168	1	0	0	0	0	1	0	0	0	2568	1203	42	3	4148	3	CACNA1E	1	181725136	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	17603	181725136	67525485	165	137156											
CACNA1E	777	broad.mit.edu	37	chr1	181726202	181726202	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctttgtggctctcatcatCatcaccttccaggagcaagg	8	12	5	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181726202	G	G	181726202	3	3	168	1	0	0	0	0	1	0	0	0	2568	816	29	4	4387	4	CACNA1E	1	181726202	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1066	181726202	67524419	166	137157											
DHX9	1660	broad.mit.edu	37	chr1	182835642	182835642	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaagaggagaagagcctGgaaaaagctgtggctacagc	14	6	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182835642	C	C	182835642	3	2	168	1	0	0	0	0	1	0	0	0	4556	1349	47	4	1442	4	DHX9	1	182835642	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1109440	182835642	66414979	167	137158											
HMCN1	83872	broad.mit.edu	37	chr1	185931698	185931698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcagtctttcacaggagGgtctgaggtctccatcatgt	11	9	6	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185931698	T	T	185931698	3	4	168	1	0	0	0	0	1	0	0	0	7287	1232	43	2	1923	2	HMCN1	1	185931698	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3096056	185931698	63318923	168	137159											
HMCN1	83872	broad.mit.edu	37	chr1	186084074	186084074	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggcgaatagatttacaggtCcatggtaaatatccgtttat	9	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186084074	A	A	186084074	2	1	168	1	0	0	0	0	0	0	0	1	7287	842	30	3		3	HMCN1	1	186084074	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	152376	186084074	63166547	169	137160											
HMCN1	83872	broad.mit.edu	37	chr1	186099268	186099268	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatttttaatttataatgcAttcataatgaatagttcaag	4	5	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186099268	T	T	186099268	1	4	168	0	1	0	0	0	0	0	0	0	7287	232	8	5		5	HMCN1	1	186099268	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	15194	186099268	63151353	170	137161											
RGS21	431704	broad.mit.edu	37	chr1	192335236	192335236	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggttccaaatcataaaaaAtggctcccttttttgtgagg	8	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192335236	G	G	192335236	2	3	168	1	0	0	0	0	0	0	0	1	13413	98	4	5		5	RGS21	1	192335236	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	6235968	192335236	56915385	171	137162											
RGS1	5996	broad.mit.edu	37	chr1	192547448	192547448	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agactataagaaaacagagtCtgatcttttgccctgtaaag	8	7	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192547448	A	A	192547448	3	1	168	1	0	0	0	0	1	0	0	0	13401	913	32	3	391	3	RGS1	1	192547448	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	212212	192547448	56703173	172	137163											
CDC73	79577	broad.mit.edu	37	chr1	193121443	193121443	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatgtagattattactttaGatttgttataggtcataaga	7	3	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193121443	T	T	193121443	1	4	168	0	1	0	0	0	0	0	0	0	3115	957	33	3		3	CDC73	1	193121443	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	573995	193121443	56129178	173	137164											
CFH	3075	broad.mit.edu	37	chr1	196682928	196682928	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaatctcagtatacatAtgccttaaaagaaaaagcga	6	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196682928	G	G	196682928	3	3	168	1	0	0	0	0	1	0	0	0	3313	449	16	5	1456	5	CFH	1	196682928	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	3561485	196682928	52567693	174	137165											
CFH	3075	broad.mit.edu	37	chr1	196716452	196716452	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaagatagaatcaatcAtaaagtgcacacctttattc	5	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196716452	T	T	196716452	1	4	168	0	1	0	0	0	0	0	0	0	3313	232	8	5		5	CFH	1	196716452	3'UTR	SNP	A	TCGA-50-6590-01A-12D-1855-08	33524	196716452	52534169	175	137166											
F13B	2165	broad.mit.edu	37	chr1	197031079	197031079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatgtaaccattactcaGgtcaggcttagtgcattttt	9	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197031079	T	T	197031079	3	4	168	1	0	0	0	0	1	0	0	0	5384	991	35	2	1739	2	F13B	1	197031079	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	314627	197031079	52219542	176	137167											
CRB1	23418	broad.mit.edu	37	chr1	197398518	197398518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagatatgtggtttcaccGtcaacatttttctatttagt	6	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197398518	T	T	197398518	1	4	168	0	1	0	0	0	0	0	0	0	3880	1160	40	3		3	CRB1	1	197398518	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	367439	197398518	51852103	177	137168											
NR5A2	2494	broad.mit.edu	37	chr1	200116598	200116598	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtacacggagagctctttGaggcaagggacaatttgatc	12	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200116598	T	T	200116598	1	4	168	0	1	0	0	0	0	0	0	0	10731	1305	45	3		3	NR5A2	1	200116598	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2718080	200116598	49134023	178	137169											
LGR6	59352	broad.mit.edu	37	chr1	202287133	202287133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggggcatccgcctggccGtgtgggccatcgtgttgctc	16	13	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202287133	T	T	202287133	3	4	168	1	0	0	0	0	1	0	0	0	8830	1145	40	3	1919	3	LGR6	1	202287133	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2170535	202287133	46963488	179	137170											
PPP1R12B	4660	broad.mit.edu	37	chr1	202464798	202464798	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaggcacaggcatcaatttCtggacaaaggatgtaagtgg	13	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202464798	T	T	202464798	2	4	168	1	0	0	0	0	0	0	0	1	12456	912	32	4		4	PPP1R12B	1	202464798	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	177665	202464798	46785823	180	137171											
KDM5B	10765	broad.mit.edu	37	chr1	202702851	202702851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggtgtggaaagcatccCtgcagagttcacattgaatc	10	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202702851	A	A	202702851	3	1	168	1	0	0	0	0	1	0	0	0	8204	681	24	2	1067	2	KDM5B	1	202702851	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	238053	202702851	46547770	181	137172											
SOX13	9580	broad.mit.edu	37	chr1	204095176	204095176	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgacaggcactcggtggctGatggcgagatgtaccggtac	15	9	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204095176	C	C	204095176	3	2	168	1	0	0	0	0	1	0	0	0	15058	1290	45	4	1833	4	SOX13	1	204095176	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1392325	204095176	45155445	182	137173											
DSTYK	25778	broad.mit.edu	37	chr1	205116708	205116708	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtagaatcatctagtcctCtgtttggctgctcagaattg	9	8	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205116708	T	T	205116708	3	4	168	1	0	0	0	0	1	0	0	0	4825	913	32	4	25	4	DSTYK	1	205116708	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1021532	205116708	44133913	183	137174											
CDK18	5129	broad.mit.edu	37	chr1	205492400	205492400	+	Frame_Shift_Del	DEL	C	-	-													gaattcacggagcaattcaaCcagctccacaaccggcggaa							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	205492400	-	-	205492400	7	5	168	1	0	1	0	1	0	0	0	0	3164	506	18	0	107	0	CDK18	1	205492400	Frame_Shift_Del	DEL	C	TCGA-50-6590-01A-12D-1855-08	375692	205492400	43758221	184	137175											
IL19	29949	broad.mit.edu	37	chr1	206972373	206972373	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taagtaatttctgctataggGaccctggatgtggagccatt	11	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206972373	A	A	206972373	1	1	168	0	1	0	0	0	0	0	0	0	7719	1189	41	4		4	IL19	1	206972373	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1479973	206972373	42278248	185	137176											
CR2	1380	broad.mit.edu	37	chr1	207640143	207640143	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctacaccctacagacatGgtgattctgtgacatttgcc	8	12	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207640143	T	T	207640143	3	4	168	1	0	0	0	0	1	0	0	0	3874	1348	47	2	337	2	CR2	1	207640143	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	667770	207640143	41610478	186	137177											
LAMB3	3914	broad.mit.edu	37	chr1	209796374	209796374	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgaagccccgcagctgctCagccacctgccccgccatca	8	19	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209796374	T	T	209796374	3	4	168	1	0	0	0	0	1	0	0	0	8684	835	29	4	1037	4	LAMB3	1	209796374	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2156231	209796374	39454247	187	137178											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209933485	209933485	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagatccgtgaaagccgccGctgccgtcccaatgtgacca	11	14	0	3	rs138600826		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209933485	C	C	209933485	3	2	168	1	0	0	0	0	1	0	0	0	16566	1087	38	4	103	4	TRAF3IP3	1	209933485	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	137111	209933485	39317136	188	137179											
C1orf107	27042	broad.mit.edu	37	chr1	210012330	210012330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctcctcgagggtgacaGcaagaagaaaatcattgtga	11	9	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210012330	T	T	210012330	3	4	168	1	0	0	0	0	1	0	0	0	2001	971	34	3	1165	3	C1orf107	1	210012330	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	78845	210012330	39238291	189	137180											
CENPF	1063	broad.mit.edu	37	chr1	214787202	214787202	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactgaagaaggaaaagcaGcaaaggcagtttcagcttga	11	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214787202	A	A	214787202	2	1	168	1	0	0	0	0	0	0	0	1	3261	962	34	4		4	CENPF	1	214787202	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	4774872	214787202	34463419	190	137181											
KCTD3	51133	broad.mit.edu	37	chr1	215747182	215747182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagattcttttttttccaGgtatgtcttataattcttta	4	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215747182	T	T	215747182	3	4	168	1	0	0	0	0	1	0	0	0	8180	1014	35	2	143	2	KCTD3	1	215747182	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	959980	215747182	33503439	191	137182											
USH2A	7399	broad.mit.edu	37	chr1	215808090	215808090	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatgttatttcagaaagCatttttgtcatctctggccc	8	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215808090	G	G	215808090	1	3	168	0	1	0	0	0	0	0	0	0	17162	725	25	4		4	USH2A	1	215808090	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	60908	215808090	33442531	192	137183											
USH2A	7399	broad.mit.edu	37	chr1	216051137	216051137	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcataaagccactgagttcCtgaataaatattgtgccacc	6	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216051137	A	A	216051137	4	1	168	1	0	0	0	0	0	1	0	0	17162	690	24	2	7084	2	USH2A	1	216051137	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	243047	216051137	33199484	193	137184											
USH2A	7399	broad.mit.edu	37	chr1	216390789	216390789	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcactgggaacacaagcatCacactttgagccagtgacaa	9	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216390789	A	A	216390789	3	1	168	1	0	0	0	0	1	0	0	0	17162	826	29	3	12757	3	USH2A	1	216390789	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	339652	216390789	32859832	194	137185											
USH2A	7399	broad.mit.edu	37	chr1	216420371	216420371	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaggccttacaattggtgaCatctaacccataaaagtttt	6	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216420371	G	G	216420371	3	3	168	1	0	0	0	0	1	0	0	0	17162	478	17	4	13497	4	USH2A	1	216420371	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	29582	216420371	32830250	195	137186											
USH2A	7399	broad.mit.edu	37	chr1	216420442	216420442	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttttttgcactcacacTgcccagagtgaggattgcag	9	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216420442	A	A	216420442	3	1	168	1	0	0	0	0	1	0	0	0	17162	1580	55	5	13568	5	USH2A	1	216420442	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	71	216420442	32830179	196	137187											
ESRRG	2104	broad.mit.edu	37	chr1	216741516	216741516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaatacctagatggtatcCcccaagagcacataggtgac	8	11	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216741516	A	A	216741516	1	1	168	0	1	0	0	0	0	0	0	0	5304	638	22	2		2	ESRRG	1	216741516	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	321074	216741516	32509105	197	137188											
BPNT1	10380	broad.mit.edu	37	chr1	220242743	220242743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttcggtatattccttgGttccatccagaggatcaacc	7	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220242743	T	T	220242743	3	4	168	1	0	0	0	0	1	0	0	0	1503	1261	44	3	581	3	BPNT1	1	220242743	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3501227	220242743	29007878	198	137189											
HHIPL2	79802	broad.mit.edu	37	chr1	222717515	222717515	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgtcgtagaggtgggctGcgtagggcgagcactcctaa	17	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222717515	T	T	222717515	3	4	168	1	0	0	0	0	1	0	0	0	7161	1319	46	3	1868	3	HHIPL2	1	222717515	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2474772	222717515	26533106	199	137190											
HHIPL2	79802	broad.mit.edu	37	chr1	222721223	222721223	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaactcaaggtgcagaGggggctggaaagggggcccg	18	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222721223	A	A	222721223	3	1	168	1	0	0	0	0	1	0	0	0	7161	1000	35	4	2046	4	HHIPL2	1	222721223	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3708	222721223	26529398	200	137191											
FAM177B	400823	broad.mit.edu	37	chr1	222920374	222920374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtctaaactttcctggggGccctacctacgattttgggc	10	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222920374	T	T	222920374	2	4	168	1	0	0	0	0	0	0	0	1	5547	1190	42	3		3	FAM177B	1	222920374	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	199151	222920374	26330247	201	137192											
LIN9	286826	broad.mit.edu	37	chr1	226483578	226483578	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccctctggtttcttttagGtgaccttgtatttatttgcc	7	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226483578	C	C	226483578	3	2	168	1	0	0	0	0	1	0	0	0	8886	1261	44	4	1447	4	LIN9	1	226483578	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3563204	226483578	22767043	202	137193											
PARP1	142	broad.mit.edu	37	chr1	226580055	226580055	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaatgctcatctcaacagcCccaaaatgcagctcagagga	8	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226580055	G	G	226580055	1	3	168	0	1	0	0	0	0	0	0	0	11548	638	22	4		4	PARP1	1	226580055	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	96477	226580055	22670566	203	137194											
WNT3A	89780	broad.mit.edu	37	chr1	228210323	228210323	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtagcctgctcatctgtgtCgctgtcccagccccacactc	8	17	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228210323	A	A	228210323	1	1	168	0	1	0	0	0	0	0	0	0	17516	899	31	3		3	WNT3A	1	228210323	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1630268	228210323	21040298	204	137195											
ACTA1	58	broad.mit.edu	37	chr1	229567635	229567635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggtggtctcgtgaatgcCcgccgactccatacctgggg	14	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229567635	A	A	229567635	3	1	168	1	0	0	0	0	1	0	0	0	191	623	22	2	318	2	ACTA1	1	229567635	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1357312	229567635	19682986	205	137196											
PGBD5	79605	broad.mit.edu	37	chr1	230473017	230473017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctgggcccccaccttcCttcaggtggacataaatctt	7	15	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230473017	A	A	230473017	3	1	168	1	0	0	0	0	1	0	0	0	11879	680	24	2	678	2	PGBD5	1	230473017	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	905382	230473017	18777604	206	137197											
AGT	183	broad.mit.edu	37	chr1	230846389	230846389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttggcctgaattggagCaggtatgaaggtggggtctt	16	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230846389	A	A	230846389	3	1	168	1	0	0	0	0	1	0	0	0	399	710	25	3	1265	3	AGT	1	230846389	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	373372	230846389	18404232	207	137198											
ARID4B	51742	broad.mit.edu	37	chr1	235383560	235383560	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgattttggaactttataGaggatatggaaaatatacca	8	3	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235383560	C	C	235383560	1	2	168	0	1	0	0	0	0	0	0	0	922	957	33	4		4	ARID4B	1	235383560	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4537171	235383560	13867061	208	137199											
LYST	1130	broad.mit.edu	37	chr1	235907394	235907394	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatttcggtctggaaaactGaggtcttgctttgagttaca	10	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235907394	A	A	235907394	3	1	168	1	0	0	0	0	1	0	0	0	9216	1294	45	4	3465	4	LYST	1	235907394	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	523834	235907394	13343227	209	137200											
NID1	4811	broad.mit.edu	37	chr1	236195668	236195668	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccctaggcactactgtgtGacccactaattttaatgtcg	7	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236195668	C	C	236195668	1	2	168	0	1	0	0	0	0	0	0	0	10509	1305	45	4		4	NID1	1	236195668	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	288274	236195668	13054953	210	137201											
ACTN2	88	broad.mit.edu	37	chr1	236917279	236917279	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccatccgcgatcaatcCctgcaggaggagctggctcg	13	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236917279	G	G	236917279	2	3	168	1	0	0	0	0	0	0	0	1	205	610	22	4		4	ACTN2	1	236917279	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	721611	236917279	12333342	211	137202											
MTR	4548	broad.mit.edu	37	chr1	237016235	237016235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaattctcatttttatttGtattgcccttagtctggcat	6	7	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237016235	T	T	237016235	1	4	168	0	1	0	0	0	0	0	0	0	10052	1392	48	3		3	MTR	1	237016235	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	98956	237016235	12234386	212	137203											
RYR2	6262	broad.mit.edu	37	chr1	237666760	237666760	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgggccccacagtttcCctgacgcaagctgccttcac	9	17	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237666760	A	A	237666760	2	1	168	1	0	0	0	0	0	0	0	1	13880	610	22	2		2	RYR2	1	237666760	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	650525	237666760	11583861	213	137204											
RYR2	6262	broad.mit.edu	37	chr1	237780726	237780726	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcatgcaagccttaaaCatgtcagctgcactcacagc	8	12	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237780726	T	T	237780726	2	4	168	1	0	0	0	0	0	0	0	1	13880	477	17	4		4	RYR2	1	237780726	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	113966	237780726	11469895	214	137205											
RYR2	6262	broad.mit.edu	37	chr1	237796971	237796971	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaaaaagctatgtttgatCatctcagttatttactggaa	6	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237796971	A	A	237796971	3	1	168	1	0	0	0	0	1	0	0	0	13880	826	29	3	6819	3	RYR2	1	237796971	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	16245	237796971	11453650	215	137206											
RYR2	6262	broad.mit.edu	37	chr1	237801599	237801599	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatttattgtatccaatgtAagcatctaatgagttttcag	6	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237801599	T	T	237801599	1	4	168	0	1	0	0	0	0	0	0	0	13880	377	13	5		5	RYR2	1	237801599	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	4628	237801599	11449022	216	137207											
RYR2	6262	broad.mit.edu	37	chr1	237886431	237886431	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttccttttttctgcagttgGaggatcctgctattagatgg	10	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237886431	T	T	237886431	4	4	168	1	0	0	0	0	0	1	0	0	13880	1175	41	3	10852	3	RYR2	1	237886431	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	84832	237886431	11364190	217	137208											
RYR2	6262	broad.mit.edu	37	chr1	237919540	237919540	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatggtctgtagaaatctgTtgtgcttactgataccctca	8	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237919540	C	C	237919540	1	2	168	0	1	0	0	0	0	0	0	0	13880	1740	60	5		5	RYR2	1	237919540	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	33109	237919540	11331081	218	137209											
RYR2	6262	broad.mit.edu	37	chr1	237947865	237947865	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatggtcacggccttctttTcatcctactggagtattttc	7	11	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237947865	G	G	237947865	3	3	168	1	0	0	0	0	1	0	0	0	13880	1783	62	5	13211	5	RYR2	1	237947865	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	28325	237947865	11302756	219	137210											
RYR2	6262	broad.mit.edu	37	chr1	237972197	237972197	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtccttgtcacattgttttCcagctcgtattaaccgttgg	9	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237972197	A	A	237972197	1	1	168	0	1	0	0	0	0	0	0	0	13880	870	30	3		3	RYR2	1	237972197	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	24332	237972197	11278424	220	137211											
CHRM3	1131	broad.mit.edu	37	chr1	240071724	240071724	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagctggaaacccagctccGagcagatggaccaagaccac	11	13	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240071724	T	T	240071724	4	4	168	1	0	0	0	0	0	1	0	0	3409	1059	37	3	975	3	CHRM3	1	240071724	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2099527	240071724	9178897	221	137212											
FMN2	56776	broad.mit.edu	37	chr1	240370908	240370908	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctacccggagcaggcatactCcctctgccccctctacccgg	8	20	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240370908	A	A	240370908	2	1	168	1	0	0	0	0	0	0	0	1	6008	842	30	3		3	FMN2	1	240370908	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	299184	240370908	8879713	222	137213											
FMN2	56776	broad.mit.edu	37	chr1	240371074	240371074	+	Missense_Mutation	SNP	C	A	A													tacccggagcgggcatacccCctcctcccccacttcccgga							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240371074	A	A	240371074	3	1	168	1	0	0	0	0	1	0	0	0	6008	623	22	2	2980	2	FMN2	1	240371074	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	166	240371074	8879547	223	137214	588	2									
FMN2	56776	broad.mit.edu	37	chr1	240371084	240371084	+	Missense_Mutation	SNP	C	T	T													gggcataccccctcctccccCacttcccggagcgggcatac							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240371084	T	T	240371084	3	4	168	1	0	0	0	0	1	0	0	0	6008	594	21	4	2990	4	FMN2	1	240371084	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	10	240371084	8879537	224	137215	588	2									
FMN2	56776	broad.mit.edu	37	chr1	240492626	240492626	+	Intron	DEL	T	-	-													atttttcttcttaacttggcTttatttccttaggttccttt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	240492626	-	-	240492626	6	5	168	0	1	1	0	1	0	0	0	0	6008	1624	56	0		0	FMN2	1	240492626	Intron	DEL	T	TCGA-50-6590-01A-12D-1855-08	121542	240492626	8757995	225	137216											
FMN2	56776	broad.mit.edu	37	chr1	240555700	240555700	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataagcttctggttgtagtAcaatagaattaataattaaa	6	3	1	1	rs113456088		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240555700	G	G	240555700	1	3	168	0	1	0	0	0	0	0	0	0	6008	406	14	5		5	FMN2	1	240555700	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	63074	240555700	8694921	226	137217											
RGS7	6000	broad.mit.edu	37	chr1	241031924	241031924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagaacgctctctcttggCtgtcaaggatcttcctttca	7	14	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241031924	T	T	241031924	3	4	168	1	0	0	0	0	1	0	0	0	13419	797	28	4	931	4	RGS7	1	241031924	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	476224	241031924	8218697	227	137218											
RGS7	6000	broad.mit.edu	37	chr1	241083296	241083296	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtggcattaaagaagacaCagaagaacatcacctaagag	10	7	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241083296	G	G	241083296	1	3	168	0	1	0	0	0	0	0	0	0	13419	493	17	4		4	RGS7	1	241083296	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	51372	241083296	8167325	228	137219											
KMO	8564	broad.mit.edu	37	chr1	241750108	241750108	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgtgggcttatttctgatCctcaatgatcacaaacctgt	7	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241750108	A	A	241750108	1	1	168	0	1	0	0	0	0	0	0	0	8495	870	30	3		3	KMO	1	241750108	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	666812	241750108	7500513	229	137220											
PLD5	200150	broad.mit.edu	37	chr1	242271246	242271246	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tactcagatcattactttatCctgtaatatatataagcaac	3	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242271246	A	A	242271246	1	1	168	0	1	0	0	0	0	0	0	0	12144	870	30	3		3	PLD5	1	242271246	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	521138	242271246	6979375	230	137221											
CEP170	9859	broad.mit.edu	37	chr1	243319538	243319538	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaacctggctatctcttctCgatgagcagtccaatctcgg	8	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243319538	T	T	243319538	3	4	168	1	0	0	0	0	1	0	0	0	3280	884	31	4	916	4	CEP170	1	243319538	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1048292	243319538	5931083	231	137222											
ZNF670	93474	broad.mit.edu	37	chr1	247202108	247202108	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgctcttgtgaatgcaaaTtaccttagatttctcccagg	7	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247202108	C	C	247202108	1	2	168	0	1	0	0	0	0	0	0	0	18204	1508	52	5		5	ZNF670	1	247202108	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	3882570	247202108	2048513	232	137223											
ZNF496	84838	broad.mit.edu	37	chr1	247486582	247486582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggccagggccaggcctGgtgctgataccttctgagct	15	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247486582	A	A	247486582	1	1	168	0	1	0	0	0	0	0	0	0	18072	1363	47	4		4	ZNF496	1	247486582	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	284474	247486582	1764039	233	137224											
NLRP3	114548	broad.mit.edu	37	chr1	247587920	247587920	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctgatgaggcccaagCcagggcagccttcagtctga	11	13	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247587920	A	A	247587920	3	1	168	1	0	0	0	0	1	0	0	0	10573	739	26	3	1185	3	NLRP3	1	247587920	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	101338	247587920	1662701	234	137225											
OR2G3	81469	broad.mit.edu	37	chr1	247769356	247769356	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtggtttggctagttccCtaatccatgcaacttttacc	7	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247769356	T	T	247769356	2	4	168	1	0	0	0	0	0	0	0	1	11093	680	24	4		4	OR2G3	1	247769356	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	181436	247769356	1481265	235	137226											
OR2G3	81469	broad.mit.edu	37	chr1	247769616	247769616	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcagcacctgctcctcCcaccttacagtggtgattat	7	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247769616	A	A	247769616	2	1	168	1	0	0	0	0	0	0	0	1	11093	610	22	2		2	OR2G3	1	247769616	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	260	247769616	1481005	236	137227											
OR14A16	284532	broad.mit.edu	37	chr1	247978357	247978357	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggccttctgtggaagggatCttcttgactgtagagaagac	13	7	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978357	A	A	247978357	3	1	168	1	0	0	0	0	1	0	0	0	11039	912	32	3	258	3	OR14A16	1	247978357	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	208741	247978357	1272264	237	137228											
OR14A16	284532	broad.mit.edu	37	chr1	247978624	247978624	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctctttggacacaggtgctCctgtccatgatgacatcata	9	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247978624	T	T	247978624	2	4	168	1	0	0	0	0	0	0	0	1	11039	854	30	4		4	OR14A16	1	247978624	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	267	247978624	1271997	238	137229											
OR14A16	284532	broad.mit.edu	37	chr1	247979040	247979040	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagatttgccattattgcagGagtaatctgcaggaaaagga	12	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247979040	T	T	247979040	1	4	168	0	1	0	0	0	0	0	0	0	11039	1189	41	3		3	OR14A16	1	247979040	5'Flank	SNP	G	TCGA-50-6590-01A-12D-1855-08	416	247979040	1271581	239	137230											
OR11L1	391189	broad.mit.edu	37	chr1	248004658	248004658	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgcatgagtggcgggaGgtcgcagaagaaatggttaa	17	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248004658	A	A	248004658	3	1	168	1	0	0	0	0	1	0	0	0	11024	1000	35	4	431	4	OR11L1	1	248004658	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	25618	248004658	1245963	240	137231											
TRIM58	25893	broad.mit.edu	37	chr1	248023910	248023910	+	Intron	DEL	C	-	-													tctgtaacagctgaaatgttCccaaacaggtaaagctccag							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248023910	-	-	248023910	6	5	168	0	1	1	0	1	0	0	0	0	16656	870	30	0		0	TRIM58	1	248023910	Intron	DEL	C	TCGA-50-6590-01A-12D-1855-08	19252	248023910	1226711	241	137232											
TRIM58	25893	broad.mit.edu	37	chr1	248031161	248031162	+	Missense_Mutation	DNP	CC	AA	AA													tttcagggtgtgagaggagtCctgagcaggtatgtgtgctt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	248031162	AA	AA	248031161	3	1	168	1	0	0	0	0	1	0	0	0	16656	842	30	3	776	3	TRIM58	1	248031161	Missense_Mutation	DNP	CC	TCGA-50-6590-01A-12D-1855-08	7251	248031161	1219460	242	137233											
OR2M4	26245	broad.mit.edu	37	chr1	248402587	248402587	+	Silent	SNP	T	A	A													ttcttgttggctgtcatggcTtatgaccgctatgtggctat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248402587	A	A	248402587	2	1	168	1	0	0	0	0	0	0	0	1	11106	1596	56	5		5	OR2M4	1	248402587	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	371426	248402587	848034	243	137234	589	2									
OR2M4	26245	broad.mit.edu	37	chr1	248402589	248402589	+	Missense_Mutation	SNP	A	T	T													cttgttggctgtcatggcttAtgaccgctatgtggctatat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248402589	T	T	248402589	3	4	168	1	0	0	0	0	1	0	0	0	11106	449	16	5	361	5	OR2M4	1	248402589	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2	248402589	848032	244	137235	589	2									
OR2M7	391196	broad.mit.edu	37	chr1	248487472	248487472	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgggtctcatgagattGgtgtatcttagagggtggca	14	4	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487472	T	T	248487472	2	4	168	1	0	0	0	0	0	0	0	1	11108	1335	47	2		2	OR2M7	1	248487472	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	84883	248487472	763149	245	137236											
OR2T34	127068	broad.mit.edu	37	chr1	248737461	248737461	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtacgtgagcatcttatAgagggagacgtcagagcagg	15	7	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248737461	T	T	248737461	3	4	168	1	0	0	0	0	1	0	0	0	11119	420	15	5	362	5	OR2T34	1	248737461	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	249989	248737461	513160	246	137237											
OR2T11	127077	broad.mit.edu	37	chr1	248789925	248789925	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaatggttgatacttcGggagccacagtaagggacat	12	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248789925	T	T	248789925	2	4	168	1	0	0	0	0	0	0	0	1	11112	1124	39	1		1	OR2T11	1	248789925	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	52464	248789925	460696	247	137238											
OR2T27	403239	broad.mit.edu	37	chr1	248813749	248813749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctcccagccaggctgccGccacaatcaaccagcagatc	7	19	1	1	rs151135924	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248813749	T	T	248813749	3	4	168	1	0	0	0	0	1	0	0	0	11115	1087	38	3	519	3	OR2T27	1	248813749	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	23824	248813749	436872	248	137239											
OR2T27	403239	broad.mit.edu	37	chr1	248813773	248813773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcaaccagcagatcttgCggctcatgaggacaggatag	11	10	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248813773	A	A	248813773	3	1	168	1	0	0	0	0	1	0	0	0	11115	768	27	3	543	3	OR2T27	1	248813773	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	24	248813773	436848	249	137240											
SNTG2	54221	broad.mit.edu	37	chr2	1263177	1263177	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgcgagcagaaaggacCtatcacctctgtgaggtgct	14	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1263177	T	T	1263177	2	4	168	1	0	0	0	0	0	0	0	1	14989	668	24	4		4	SNTG2	2	1263177	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08		1263177	241936196	250	137241											
KIDINS220	57498	broad.mit.edu	37	chr2	8926244	8926244	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcacaatacctgatgagtCtaatgttcaaggtgtgtttt	9	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8926244	G	G	8926244	1	3	168	0	1	0	0	0	0	0	0	0	8341	928	32	4		4	KIDINS220	2	8926244	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	7663067	8926244	234273129	251	137242											
KLF11	8462	broad.mit.edu	37	chr2	10188397	10188397	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctccccagttgtctgtGgggactgtgagacccatcct	10	16	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10188397	T	T	10188397	2	4	168	1	0	0	0	0	0	0	0	1	8410	1335	47	2		2	KLF11	2	10188397	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1262153	10188397	233010976	252	137243											
ROCK2	9475	broad.mit.edu	37	chr2	11484051	11484051	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccacgggcggacgggcacGgagggctgggcggagagggg	23	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11484051	C	C	11484051	1	2	168	0	1	0	0	0	0	0	0	0	13629	1131	39	4		4	ROCK2	2	11484051	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1295654	11484051	231715322	253	137244											
NBAS	51594	broad.mit.edu	37	chr2	15644269	15644269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaagccaatttgtgttacCtgttcttgtccctggcgact	9	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15644269	A	A	15644269	3	1	168	1	0	0	0	0	1	0	0	0	10280	695	24	2	6329	2	NBAS	2	15644269	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4160218	15644269	227555104	254	137245											
FAM49A	81553	broad.mit.edu	37	chr2	16746923	16746923	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattgacatacatctcggatCtctgggcctgcgcctttgta	9	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16746923	A	A	16746923	3	1	168	1	0	0	0	0	1	0	0	0	5626	912	32	3	824	3	FAM49A	2	16746923	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1102654	16746923	226452450	255	137246											
NT5C1B	93034	broad.mit.edu	37	chr2	18745415	18745415	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacatatatcacagctgtgAtacagtgagccaaagaaagt	9	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18745415	G	G	18745415	1	3	168	0	1	0	0	0	0	0	0	0	10781	348	12	5		5	NT5C1B	2	18745415	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1998492	18745415	224453958	256	137247											
PUM2	23369	broad.mit.edu	37	chr2	20491354	20491354	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccattttttcttctttttCttttctttcttccttttctt	0	10	6	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20491354	A	A	20491354	1	1	168	0	1	0	0	0	0	0	0	0	12934	928	32	3		3	PUM2	2	20491354	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1745939	20491354	222708019	257	137248											
APOB	338	broad.mit.edu	37	chr2	21234160	21234160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatggctaaactccacaccCtgaaccttagcaacagtgtc	7	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21234160	A	A	21234160	3	1	168	1	0	0	0	0	1	0	0	0	787	680	24	2	8127	2	APOB	2	21234160	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	742806	21234160	221965213	258	137249											
DNMT3A	1788	broad.mit.edu	37	chr2	25472446	25472446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggcactatagaccaggCgtgctctctgccatcccacc	9	16	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25472446	A	A	25472446	1	1	168	0	1	0	0	0	0	0	0	0	4716	783	27	3		3	DNMT3A	2	25472446	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4238286	25472446	217726927	259	137250											
DTNB	1838	broad.mit.edu	37	chr2	25851118	25851118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtgagtagaaggaaggCgcttgttcaactgatagtag	14	4	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25851118	A	A	25851118	3	1	168	1	0	0	0	0	1	0	0	0	4829	768	27	3	1667	3	DTNB	2	25851118	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	378672	25851118	217348255	260	137251											
KIF3C	3797	broad.mit.edu	37	chr2	26204527	26204527	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaccgtgccattgaaacccTggagcacggagtctatcagg	11	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26204527	A	A	26204527	3	1	168	1	0	0	0	0	1	0	0	0	8372	1580	55	5	2153	5	KIF3C	2	26204527	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	353409	26204527	216994846	261	137252											
OTOF	9381	broad.mit.edu	37	chr2	26686933	26686933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcctcccagtgcctcaGggccaacagcgccacatgct	10	16	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26686933	T	T	26686933	3	4	168	1	0	0	0	0	1	0	0	0	11397	991	35	2	1204	2	OTOF	2	26686933	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	482406	26686933	216512440	262	137253											
PPM1G	5496	broad.mit.edu	37	chr2	27607030	27607030	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccacagctcatactcagaAtcaagaggtcctgactgaac	7	14	3	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27607030	C	C	27607030	1	2	168	0	1	0	0	0	0	0	0	0	12441	116	4	5		5	PPM1G	2	27607030	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	920097	27607030	215592343	263	137254											
C2orf16	84226	broad.mit.edu	37	chr2	27805239	27805239	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccctctgagaggagccgaCgcagtccccttaaggaggga	14	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27805239	T	T	27805239	3	4	168	1	0	0	0	0	1	0	0	0	2179	536	19	4	5802	4	C2orf16	2	27805239	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	198209	27805239	215394134	264	137255											
ALK	238	broad.mit.edu	37	chr2	29606781	29606781	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaacagatatgagaattaGgcctaacatgtggacagggt	12	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29606781	A	A	29606781	1	1	168	0	1	0	0	0	0	0	0	0	525	1015	35	4		4	ALK	2	29606781	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1801542	29606781	213592592	265	137256											
XDH	7498	broad.mit.edu	37	chr2	31558965	31558965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctcccaccactgccaaCcatcattccaaggccaagca	4	19	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31558965	A	A	31558965	1	1	168	0	1	0	0	0	0	0	0	0	17553	522	18	3		3	XDH	2	31558965	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1952184	31558965	211640408	266	137257											
TTC27	55622	broad.mit.edu	37	chr2	32858900	32858900	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgtttgagattatacagtGatagtagttcatatttattt	8	2	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32858900	A	A	32858900	1	1	168	0	1	0	0	0	0	0	0	0	16821	1305	45	4		4	TTC27	2	32858900	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1299935	32858900	210340473	267	137258											
LTBP1	4052	broad.mit.edu	37	chr2	33589266	33589266	+	Intron	DEL	T	-	-													ctgattttctttagtaatacTtttttttgctcttaagatat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33589266	-	-	33589266	6	5	168	0	1	1	0	1	0	0	0	0	9160	1624	56	0		0	LTBP1	2	33589266	Intron	DEL	T	TCGA-50-6590-01A-12D-1855-08	730366	33589266	209610107	268	137259											
SULT6B1	391365	broad.mit.edu	37	chr2	37406600	37406600	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttaccaacagccataCcttgtcctttcatgaactgt	4	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37406600	A	A	37406600	5	1	168	1	0	0	0	0	0	0	1	0	15502	521	18	3	397	3	SULT6B1	2	37406600	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	3817334	37406600	205792773	269	137260											
DHX57	90957	broad.mit.edu	37	chr2	39088257	39088257	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcacaggagggtcactaTacttgtggtgggtattcgtt	13	6	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39088257	C	C	39088257	3	2	168	1	0	0	0	0	1	0	0	0	4553	1406	49	5	2945	5	DHX57	2	39088257	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1681657	39088257	204111116	270	137261											
SLC8A1	6546	broad.mit.edu	37	chr2	40342413	40342413	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagaagccttttatgtggcAgtaggcctccagggaggaga	14	7	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40342413	T	T	40342413	3	4	168	1	0	0	0	0	1	0	0	0	14820	188	7	5	23	5	SLC8A1	2	40342413	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1254156	40342413	202856960	271	137262											
MTA3	57504	broad.mit.edu	37	chr2	42836680	42836680	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagttgaaacatagggaactCtttttgtcacgccagtatga	9	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42836680	G	G	42836680	2	3	168	1	0	0	0	0	0	0	0	1	10004	900	32	4		4	MTA3	2	42836680	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	2494267	42836680	200362693	272	137263											
THADA	63892	broad.mit.edu	37	chr2	43798777	43798777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgctcccaaaatctggGctctttttaaaaacgatttc	5	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43798777	T	T	43798777	1	4	168	0	1	0	0	0	0	0	0	0	15963	1218	42	3		3	THADA	2	43798777	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	962097	43798777	199400596	273	137264											
PREPL	9581	broad.mit.edu	37	chr2	44571703	44571703	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaacaaccttcttggtaaTaaacaaaaccaccatgttta	4	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44571703	A	A	44571703	3	1	168	1	0	0	0	0	1	0	0	0	12581	1406	49	5	1866	5	PREPL	2	44571703	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	772926	44571703	198627670	274	137265											
SRBD1	55133	broad.mit.edu	37	chr2	45619952	45619952	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaggaagatcaccatgcTttatttttctcatgtataaa	6	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45619952	C	C	45619952	1	2	168	0	1	0	0	0	0	0	0	0	15251	1624	56	5		5	SRBD1	2	45619952	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1048249	45619952	197579421	275	137266											
FSHR	2492	broad.mit.edu	37	chr2	49190148	49190148	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagaatctttgctttggaCacagtgatgaggggcacctt	12	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49190148	G	G	49190148	2	3	168	1	0	0	0	0	0	0	0	1	6133	465	17	4		4	FSHR	2	49190148	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3570196	49190148	194009225	276	137267											
FSHR	2492	broad.mit.edu	37	chr2	49295382	49295382	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctccaggtccccaaatcctGaaaatgcacctttttggatg	7	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49295382	A	A	49295382	3	1	168	1	0	0	0	0	1	0	0	0	6133	1294	45	4	1923	4	FSHR	2	49295382	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	105234	49295382	193903991	277	137268											
NRXN1	9378	broad.mit.edu	37	chr2	50280529	50280529	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcagtggctgttgactcAgttgtcatagaggaaggcac	14	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50280529	T	T	50280529	2	4	168	1	0	0	0	0	0	0	0	1	10760	175	7	5		5	NRXN1	2	50280529	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	985147	50280529	192918844	278	137269											
NRXN1	9378	broad.mit.edu	37	chr2	50464028	50464028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctatggccagtctgtctgCtcgtgtactgggtcggtcat	12	11	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50464028	A	A	50464028	3	1	168	1	0	0	0	0	1	0	0	0	10760	797	28	3	1102	3	NRXN1	2	50464028	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	183499	50464028	192735345	279	137270											
NRXN1	9378	broad.mit.edu	37	chr2	50850443	50850443	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttactctcttatccactgCgctgttacctgacgcagatt	7	12	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50850443	G	G	50850443	1	3	168	0	1	0	0	0	0	0	0	0	10760	783	27	4		4	NRXN1	2	50850443	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	386415	50850443	192348930	280	137271											
SMEK2	57223	broad.mit.edu	37	chr2	55831071	55831071	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaacaaaaattccagaAaagaagcaaacattaagtta	6	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55831071	G	G	55831071	1	3	168	0	1	0	0	0	0	0	0	0	14908	29	1	5		5	SMEK2	2	55831071	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	4980628	55831071	187368302	281	137272											
CCDC85A	114800	broad.mit.edu	37	chr2	56420064	56420064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagaagccccggagcgaGggcagcccggagcactccaa	14	15	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56420064	T	T	56420064	3	4	168	1	0	0	0	0	1	0	0	0	2887	991	35	2	735	2	CCDC85A	2	56420064	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	588993	56420064	186779309	282	137273											
ARHGAP25	9938	broad.mit.edu	37	chr2	69002621	69002621	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggagcccgctgggatttCacttaaactcacaggggcct	11	13	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69002621	T	T	69002621	1	4	168	0	1	0	0	0	0	0	0	0	876	841	29	4		4	ARHGAP25	2	69002621	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	12582557	69002621	174196752	283	137274											
ANTXR1	84168	broad.mit.edu	37	chr2	69304502	69304502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccacatccaagcctaacAgtctccccatgtgtttgtgt	6	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69304502	T	T	69304502	1	4	168	0	1	0	0	0	0	0	0	0	711	203	7	5		5	ANTXR1	2	69304502	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	301881	69304502	173894871	284	137275											
ADD2	119	broad.mit.edu	37	chr2	70922833	70922833	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcaataaggagtgggcagTgatgctggactgtactcacc	12	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70922833	A	A	70922833	1	1	168	0	1	0	0	0	0	0	0	0	305	1711	59	5		5	ADD2	2	70922833	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1618331	70922833	172276540	285	137276											
ZNF638	27332	broad.mit.edu	37	chr2	71625961	71625961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatttatgttttaaattcGtataataatttttagcatct	3	3	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71625961	T	T	71625961	1	4	168	0	1	0	0	0	0	0	0	0	18182	1160	40	3		3	ZNF638	2	71625961	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	703128	71625961	171573412	286	137277											
CYP26B1	56603	broad.mit.edu	37	chr2	72371192	72371192	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagcaacatgcgggtgctgcGaggccactcggtgctcacga	14	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72371192	C	C	72371192	3	2	168	1	0	0	0	0	1	0	0	0	4189	1058	37	4	1203	4	CYP26B1	2	72371192	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	745231	72371192	170828181	287	137278											
EXOC6B	23233	broad.mit.edu	37	chr2	73052881	73052881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacccagaggagcctgcccCgtcccgcccgttcccgcccc	10	23	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73052881	A	A	73052881	1	1	168	0	1	0	0	0	0	0	0	0	5351	667	23	1		1	EXOC6B	2	73052881	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	681689	73052881	170146492	288	137279											
EMX1	2016	broad.mit.edu	37	chr2	73160986	73160986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggaggaagggcctgagtCcgagcagaagaagaagggct	19	6	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73160986	A	A	73160986	3	1	168	1	0	0	0	0	1	0	0	0	5149	855	30	3	786	3	EMX1	2	73160986	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	108105	73160986	170038387	289	137280											
RAB11FIP5	26056	broad.mit.edu	37	chr2	73339481	73339481	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccccctactcactgcgtgTgctgggcgcggcctgcgccg	14	18	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73339481	A	A	73339481	3	1	168	1	0	0	0	0	1	0	0	0	13005	1696	59	5	1556	5	RAB11FIP5	2	73339481	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	178495	73339481	169859892	290	137281											
DCTN1	1639	broad.mit.edu	37	chr2	74597689	74597689	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcctggagaagatcattaaCactttcaggcatggttctca	9	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74597689	G	G	74597689	1	3	168	0	1	0	0	0	0	0	0	0	4339	493	17	4		4	DCTN1	2	74597689	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1258208	74597689	168601684	291	137282											
AUP1	550	broad.mit.edu	37	chr2	74754001	74754001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatattattcaggctttgcCgtagtagctccataattcca	7	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74754001	A	A	74754001	1	1	168	0	1	0	0	0	0	0	0	0	1225	667	23	1		1	AUP1	2	74754001	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	156312	74754001	168445372	292	137283											
REG1A	5967	broad.mit.edu	37	chr2	79349907	79349907	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgagtgtgcacacaggcCcagtgattccatgtattttt	9	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79349907	A	A	79349907	1	1	168	0	1	0	0	0	0	0	0	0	13318	638	22	2		2	REG1A	2	79349907	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4595906	79349907	163849466	293	137284											
REG3A	5068	broad.mit.edu	37	chr2	79384319	79384319	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcccatgatgagttgcaCaccaaacacaggctgctgac	9	13	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384319	A	A	79384319	1	1	168	0	1	0	0	0	0	0	0	0	13320	493	17	3		3	REG3A	2	79384319	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	34412	79384319	163815054	294	137285											
CTNNA2	1496	broad.mit.edu	37	chr2	80085237	80085237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcaagggctttgctctccGcggtgacacgcttactcatc	11	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80085237	T	T	80085237	3	4	168	1	0	0	0	0	1	0	0	0	4047	1087	38	3	407	3	CTNNA2	2	80085237	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	700918	80085237	163114136	295	137286											
SMYD1	150572	broad.mit.edu	37	chr2	88408080	88408080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagtagcgtcttgaggctgGtgttcccttcctggcctgag	13	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88408080	T	T	88408080	1	4	168	0	1	0	0	0	0	0	0	0	14935	1276	44	3		3	SMYD1	2	88408080	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	8322843	88408080	154791293	296	137287											
NCAPH	23397	broad.mit.edu	37	chr2	97030231	97030231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctttagttacttaagatgGcccagggccatagggtagag	12	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97030231	T	T	97030231	3	4	168	1	0	0	0	0	1	0	0	0	10304	1203	42	3	1650	3	NCAPH	2	97030231	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	8622151	97030231	146169142	297	137288											
LYG1	129530	broad.mit.edu	37	chr2	99908990	99908990	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggttgagagggcgaaagctCatagctaccacagtagttca	12	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99908990	T	T	99908990	1	4	168	0	1	0	0	0	0	0	0	0	9192	841	29	4		4	LYG1	2	99908990	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2878759	99908990	143290383	298	137289											
REV1	51455	broad.mit.edu	37	chr2	100020963	100020963	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcgtcactgttcgattcttGaggttctggtatttgcaaca	10	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100020963	C	C	100020963	3	2	168	1	0	0	0	0	1	0	0	0	13347	1299	45	4	790	4	REV1	2	100020963	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	111973	100020963	143178410	299	137290											
MAP4K4	9448	broad.mit.edu	37	chr2	102456515	102456515	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtttagtttcttgccaaCtagagtaggtccctcccttc	7	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102456515	T	T	102456515	1	4	168	0	1	0	0	0	0	0	0	0	9354	580	20	4		4	MAP4K4	2	102456515	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2435552	102456515	140742858	300	137291											
IL18R1	8809	broad.mit.edu	37	chr2	103003409	103003409	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgttttatataattgcactGtggccagcacgggaggcaca	11	8	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103003409	C	C	103003409	3	2	168	1	0	0	0	0	1	0	0	0	7717	1377	48	4	924	4	IL18R1	2	103003409	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	546894	103003409	140195964	301	137292											
IL18R1	8809	broad.mit.edu	37	chr2	103013338	103013338	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtcttgcctgttctttccGagtcttaatcttcagaaaca	6	10	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103013338	T	T	103013338	4	4	168	1	0	0	0	0	0	1	0	0	7717	1059	37	3	1656	3	IL18R1	2	103013338	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	9929	103013338	140186035	302	137293											
SLC9A4	389015	broad.mit.edu	37	chr2	103124755	103124755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaggtaagtagatttccCttatatttaaataaataggt	6	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103124755	A	A	103124755	1	1	168	0	1	0	0	0	0	0	0	0	14830	696	24	2		2	SLC9A4	2	103124755	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	111417	103124755	140074618	303	137294											
RGPD3	653489	broad.mit.edu	37	chr2	107040328	107040328	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacatctttatcatatctGtagaattctgccctgtgact	5	11	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107040328	T	T	107040328	4	4	168	1	0	0	0	0	0	1	0	0	13395	1372	48	3	1197	3	RGPD3	2	107040328	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3915573	107040328	136159045	304	137295											
ST6GAL2	84620	broad.mit.edu	37	chr2	107446571	107446571	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaatcttctctttagtgttCtcctggataatatcccagag	7	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107446571	A	A	107446571	3	1	168	1	0	0	0	0	1	0	0	0	15340	912	32	3	415	3	ST6GAL2	2	107446571	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	406243	107446571	135752802	305	137296											
ZC3H6	376940	broad.mit.edu	37	chr2	113088956	113088956	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatgtcaaacacaaaagaGgcgatgatgatgatgaagat	10	5	1	6			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113088956	T	T	113088956	3	4	168	1	0	0	0	0	1	0	0	0	17697	1000	35	2	2507	2	ZC3H6	2	113088956	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5642385	113088956	130110417	306	137297											
CKAP2L	150468	broad.mit.edu	37	chr2	113509933	113509933	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttcttcctcttctttttCaatgctcttccagaatgaaa	3	11	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113509933	G	G	113509933	3	3	168	1	0	0	0	0	1	0	0	0	3474	835	29	4	744	4	CKAP2L	2	113509933	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	420977	113509933	129689440	307	137298											
PSD4	23550	broad.mit.edu	37	chr2	113951608	113951608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggagatgctgagcttgGgactggctttgccaaaatat	13	7	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113951608	T	T	113951608	1	4	168	0	1	0	0	0	0	0	0	0	12755	1247	43	2		2	PSD4	2	113951608	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	441675	113951608	129247765	308	137299											
DDX18	8886	broad.mit.edu	37	chr2	118579413	118579413	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtggtgacagccacatttaGacttctaccatatatcattt	6	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118579413	T	T	118579413	1	4	168	0	1	0	0	0	0	0	0	0	4378	957	33	3		3	DDX18	2	118579413	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4627805	118579413	124619960	309	137300											
TMEM177	80775	broad.mit.edu	37	chr2	120439110	120439110	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattctctcactcatgccgtGgagtcctggctggaccgccg	12	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120439110	A	A	120439110	2	1	168	1	0	0	0	0	0	0	0	1	16217	1335	47	4		4	TMEM177	2	120439110	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1859697	120439110	122760263	310	137301											
TFCP2L1	29842	broad.mit.edu	37	chr2	121991727	121991727	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggggcactcgattctgctCcagctcctgacagacataaa	9	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121991727	G	G	121991727	3	3	168	1	0	0	0	0	1	0	0	0	15919	864	30	4	317	4	TFCP2L1	2	121991727	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1552617	121991727	121207646	311	137302											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204345	125204345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggtgacagcaaagcgcGgctcagcagcagcttgccct	12	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125204345	T	T	125204345	3	4	168	1	0	0	0	0	1	0	0	0	3682	1116	39	1	771	1	CNTNAP5	2	125204345	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3212618	125204345	117995028	312	137303											
MYO7B	4648	broad.mit.edu	37	chr2	128354111	128354111	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgctcagcatccagaaagtCcttcggggctacagatacag	11	12	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128354111	T	T	128354111	2	4	168	1	0	0	0	0	0	0	0	1	10177	842	30	4		4	MYO7B	2	128354111	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3149766	128354111	114845262	313	137304											
MYO7B	4648	broad.mit.edu	37	chr2	128394410	128394410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcaccaagatctccagctgGagcagcggcagcacctactt	9	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128394410	T	T	128394410	3	4	168	1	0	0	0	0	1	0	0	0	10177	1183	41	3	6349	3	MYO7B	2	128394410	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	40299	128394410	114804963	314	137305											
WDR33	55339	broad.mit.edu	37	chr2	128482706	128482706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgatatcaaaaagtttaCagagatgatcacgtgatgct	8	6	3	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128482706	A	A	128482706	3	1	168	1	0	0	0	0	1	0	0	0	17414	478	17	3	3131	3	WDR33	2	128482706	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	88296	128482706	114716667	315	137306											
PLEKHB2	55041	broad.mit.edu	37	chr2	132109716	132109716	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaaggagtggaggaagttCcctcctagctcgccctcatc	11	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132109716	A	A	132109716	1	1	168	0	1	0	0	0	0	0	0	0	12160	870	30	3		3	PLEKHB2	2	132109716	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3627010	132109716	111089657	316	137307											
TUBA3D	113457	broad.mit.edu	37	chr2	132238277	132238277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcgccaccatcaagacCaagcgcaccatccagtttgt	7	16	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132238277	A	A	132238277	2	1	168	1	0	0	0	0	0	0	0	1	16873	581	21	2		2	TUBA3D	2	132238277	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	128561	132238277	110961096	317	137308											
YSK4	80122	broad.mit.edu	37	chr2	135743311	135743311	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaaataaggggtttgaaCcagattgtctctgaggtcct	11	6	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135743311	G	G	135743311	1	3	168	0	1	0	0	0	0	0	0	0	17622	522	18	4		4	YSK4	2	135743311	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3505034	135743311	107456062	318	137309											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135848566	135848566	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccattttattggtacatatAgggtatatttacttctggca	8	6	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135848566	G	G	135848566	5	3	168	1	0	0	0	0	0	0	1	0	13043	434	15	5	163	5	RAB3GAP1	2	135848566	Splice_Site	SNP	A	TCGA-50-6590-01A-12D-1855-08	105255	135848566	107350807	319	137310											
R3HDM1	23518	broad.mit.edu	37	chr2	136380227	136380227	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgttgttgttttttagattCcagtcaagaatacactgatt	8	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136380227	T	T	136380227	3	4	168	1	0	0	0	0	1	0	0	0	12995	855	30	4	440	4	R3HDM1	2	136380227	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	531661	136380227	106819146	320	137311											
LCT	3938	broad.mit.edu	37	chr2	136561716	136561716	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctgggaagaagccagatCagctgttgcatcagtcatgc	11	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136561716	G	G	136561716	1	3	168	0	1	0	0	0	0	0	0	0	8765	841	29	4		4	LCT	2	136561716	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	181489	136561716	106637657	321	137312											
THSD7B	80731	broad.mit.edu	37	chr2	138414452	138414452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttgagactgtgggccgcCagtctagatcaaggactttt	12	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138414452	A	A	138414452	3	1	168	1	0	0	0	0	1	0	0	0	16003	595	21	2	4190	2	THSD7B	2	138414452	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1852736	138414452	104784921	322	137313											
THSD7B	80731	broad.mit.edu	37	chr2	138414563	138414563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagagcacttttcagttcTttagccttcattgatcaatg	6	10	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138414563	A	A	138414563	1	1	168	0	1	0	0	0	0	0	0	0	16003	1624	56	5		5	THSD7B	2	138414563	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	111	138414563	104784810	323	137314											
HNMT	3176	broad.mit.edu	37	chr2	138722049	138722049	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttcctgctctgtctttctCagaaaaccaaatatggcatc	6	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138722049	G	G	138722049	1	3	168	0	1	0	0	0	0	0	0	0	7322	841	29	4		4	HNMT	2	138722049	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	307486	138722049	104477324	324	137315											
LRP1B	53353	broad.mit.edu	37	chr2	140992364	140992364	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttctctcaccccagcagtTagtggtcctttcaaatcaga	6	13	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140992364	A	A	140992364	2	1	168	1	0	0	0	0	0	0	0	1	9042	1741	61	5		5	LRP1B	2	140992364	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	2270315	140992364	102207009	325	137316											
LRP1B	53353	broad.mit.edu	37	chr2	141115807	141115807	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtttacaatcctttatctGaagctctcaaggccaaattt	7	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141115807	T	T	141115807	1	4	168	0	1	0	0	0	0	0	0	0	9042	1305	45	3		3	LRP1B	2	141115807	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	123443	141115807	102083566	326	137317											
LRP1B	53353	broad.mit.edu	37	chr2	141299446	141299446	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgtgtacttgttggacCgcagtatagctcttcttccc	8	13	2	0	rs111444554		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141299446	G	G	141299446	3	3	168	1	0	0	0	0	1	0	0	0	9042	652	23	4	6702	4	LRP1B	2	141299446	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	183639	141299446	101899927	327	137318											
MBD5	55777	broad.mit.edu	37	chr2	149247082	149247082	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaccttgtgagttgcaacCgaggattgacccatctcttg	9	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149247082	T	T	149247082	3	4	168	1	0	0	0	0	1	0	0	0	9440	652	23	4	3208	4	MBD5	2	149247082	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	7947636	149247082	93952291	328	137319											
NEB	4703	broad.mit.edu	37	chr2	152417259	152417259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatatgggaaaatgcatctGgttagcttctgagtagcagg	13	5	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152417259	T	T	152417259	1	4	168	0	1	0	0	0	0	0	0	0	10397	1363	47	2		2	NEB	2	152417259	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3170177	152417259	90782114	329	137320											
NEB	4703	broad.mit.edu	37	chr2	152544927	152544927	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagctgaaaaacaaaggatAtttgaacggttcaggggaac	11	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152544927	G	G	152544927	1	3	168	0	1	0	0	0	0	0	0	0	10397	464	16	5		5	NEB	2	152544927	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	127668	152544927	90654446	330	137321											
NR4A2	4929	broad.mit.edu	37	chr2	157183351	157183351	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccccggatgatctccaTggagccagtcaggagatcat	11	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157183351	C	C	157183351	3	2	168	1	0	0	0	0	1	0	0	0	10728	1464	51	5	568	5	NR4A2	2	157183351	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	4638424	157183351	86016022	331	137322											
TANC1	85461	broad.mit.edu	37	chr2	160005759	160005759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtgccacacacataacCattgaagacaaaaatgaaac	5	11	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160005759	A	A	160005759	2	1	168	1	0	0	0	0	0	0	0	1	15663	581	21	2		2	TANC1	2	160005759	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	2822408	160005759	83193614	332	137323											
BAZ2B	29994	broad.mit.edu	37	chr2	160229598	160229598	+	Nonsense_Mutation	SNP	G	A	A													tacaaaaatccccccacattGgggaagaatccagtaccggc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160229598	A	A	160229598	4	1	168	1	0	0	0	0	0	1	0	0	1337	1357	47	4	2379	4	BAZ2B	2	160229598	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	223839	160229598	82969775	333	137324	590	2									
BAZ2B	29994	broad.mit.edu	37	chr2	160229604	160229604	+	Missense_Mutation	SNP	G	A	A													aatccccccacattggggaaGaatccagtaccggcgtctgt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160229604	A	A	160229604	3	1	168	1	0	0	0	0	1	0	0	0	1337	942	33	4	2385	4	BAZ2B	2	160229604	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	6	160229604	82969769	334	137325	590	2									
BAZ2B	29994	broad.mit.edu	37	chr2	160229657	160229657	+	Missense_Mutation	SNP	G	A	A													caaacatcactgaacgcaatGagtgagacgcatcaaagagc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160229657	A	A	160229657	3	1	168	1	0	0	0	0	1	0	0	0	1337	1294	45	4	2438	4	BAZ2B	2	160229657	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	53	160229657	82969716	335	137326	591	2									
BAZ2B	29994	broad.mit.edu	37	chr2	160229661	160229661	+	Missense_Mutation	SNP	G	A	A													catcactgaacgcaatgagtGagacgcatcaaagagcttcc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160229661	A	A	160229661	3	1	168	1	0	0	0	0	1	0	0	0	1337	1290	45	4	2442	4	BAZ2B	2	160229661	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4	160229661	82969712	336	137327	591	2									
PLA2R1	22925	broad.mit.edu	37	chr2	160807914	160807914	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggacaacagtgaggaaGgactggtgatactggtctgt	15	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160807914	C	C	160807914	2	2	168	1	0	0	0	0	0	0	0	1	12105	987	35	4		4	PLA2R1	2	160807914	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	578253	160807914	82391459	337	137328											
DPP4	1803	broad.mit.edu	37	chr2	162902171	162902171	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacaattccatttcattgCcatcactgtgcacttacttc	4	12	2	1	rs112912302		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162902171	T	T	162902171	1	4	168	0	1	0	0	0	0	0	0	0	4769	754	26	4		4	DPP4	2	162902171	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2094257	162902171	80297202	338	137329											
GCG	2641	broad.mit.edu	37	chr2	163003725	163003725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatactaaggagagcatccCcaaccctaaacatcttcaaa	4	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163003725	A	A	163003725	1	1	168	0	1	0	0	0	0	0	0	0	6352	638	22	2		2	GCG	2	163003725	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	101554	163003725	80195648	339	137330											
GCG	2641	broad.mit.edu	37	chr2	163003758	163003758	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaaaatgatcagggctTatgggcactatttgacgagc	10	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163003758	C	C	163003758	1	2	168	0	1	0	0	0	0	0	0	0	6352	1769	61	5		5	GCG	2	163003758	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	33	163003758	80195615	340	137331											
FAP	2191	broad.mit.edu	37	chr2	163099430	163099430	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcttacctcttgaagggcGtaagacaatgcacatcacca	8	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163099430	A	A	163099430	3	1	168	1	0	0	0	0	1	0	0	0	5730	1145	40	4	2303	4	FAP	2	163099430	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	95672	163099430	80099943	341	137332											
TTC21B	79809	broad.mit.edu	37	chr2	166755187	166755187	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaaaaatacaataagtaGgtatttacctggcttacgtt	6	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166755187	C	C	166755187	1	2	168	0	1	0	0	0	0	0	0	0	16814	1015	35	4		4	TTC21B	2	166755187	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3655757	166755187	76444186	342	137333											
SCN1A	6323	broad.mit.edu	37	chr2	166859123	166859123	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgatgtcaaacctgtcaccAgttgtggtgttaatacagtg	10	8	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166859123	T	T	166859123	2	4	168	1	0	0	0	0	0	0	0	1	14027	175	7	5		5	SCN1A	2	166859123	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	103936	166859123	76340250	343	137334											
XIRP2	129446	broad.mit.edu	37	chr2	168099200	168099200	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatatagtgatcacagtgTcacttcctcaactctggcac	7	11	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168099200	A	A	168099200	3	1	168	1	0	0	0	0	1	0	0	0	17557	1667	58	5	1328	5	XIRP2	2	168099200	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1240077	168099200	75100173	344	137335											
XIRP2	129446	broad.mit.edu	37	chr2	168099600	168099600	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagaatacttggaatgGgatgaaattctgaagggaga	14	2	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168099600	A	A	168099600	4	1	168	1	0	0	0	0	0	1	0	0	17557	1241	43	4	1728	4	XIRP2	2	168099600	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	400	168099600	75099773	345	137336											
XIRP2	129446	broad.mit.edu	37	chr2	168102985	168102985	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatgactatctattgtcttCttcatgaaaatgatggtgac	7	7	4	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168102985	T	T	168102985	3	4	168	1	0	0	0	0	1	0	0	0	17557	913	32	4	5113	4	XIRP2	2	168102985	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3385	168102985	75096388	346	137337											
XIRP2	129446	broad.mit.edu	37	chr2	168106954	168106954	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataacacatattaaaactCaagcggaagatatgcttgtg	7	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168106954	T	T	168106954	4	4	168	1	0	0	0	0	0	1	0	0	17557	827	29	4	9082	4	XIRP2	2	168106954	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3969	168106954	75092419	347	137338											
SPC25	57405	broad.mit.edu	37	chr2	169728007	169728007	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagctgaaaaattgttggtCttccttacattctcttgaaa	6	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169728007	A	A	169728007	3	1	168	1	0	0	0	0	1	0	0	0	15138	912	32	3	69	3	SPC25	2	169728007	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1621053	169728007	73471366	348	137339											
ABCB11	8647	broad.mit.edu	37	chr2	169836375	169836375	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttttggcttatacataCcctgtctattgtctcaaaaa	4	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169836375	A	A	169836375	5	1	168	1	0	0	0	0	0	0	1	0	42	521	18	3	2839	3	ABCB11	2	169836375	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	108368	169836375	73362998	349	137340											
LRP2	4036	broad.mit.edu	37	chr2	170012963	170012963	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacatctgttcccatccattCcttagagatcttgcttctgt	5	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170012963	A	A	170012963	1	1	168	0	1	0	0	0	0	0	0	0	9043	870	30	3		3	LRP2	2	170012963	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	176588	170012963	73186410	350	137341											
LRP2	4036	broad.mit.edu	37	chr2	170031841	170031841	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcgggcaaagggccagttCatcagagccatctgagcagt	13	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170031841	G	G	170031841	3	3	168	1	0	0	0	0	1	0	0	0	9043	835	29	4	3437	4	LRP2	2	170031841	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	18878	170031841	73167532	351	137342											
LRP2	4036	broad.mit.edu	37	chr2	170031859	170031859	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcagagccatctgagcAgtctttctgtccatcacatt	6	12	6	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170031859	T	T	170031859	3	4	168	1	0	0	0	0	1	0	0	0	9043	188	7	5	3455	5	LRP2	2	170031859	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	18	170031859	73167514	352	137343											
KBTBD10	10324	broad.mit.edu	37	chr2	170367047	170367047	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctccagaaaaaaatcaaAgttctaaaagatgctttcgc	6	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170367047	T	T	170367047	3	4	168	1	0	0	0	0	1	0	0	0	8060	69	3	5	761	5	KBTBD10	2	170367047	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	335188	170367047	72832326	353	137344											
PHOSPHO2	493911	broad.mit.edu	37	chr2	170557703	170557703	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagtgacatcattgcctttCactccagggatggtggaact	11	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170557703	T	T	170557703	2	4	168	1	0	0	0	0	0	0	0	1	11952	825	29	4		4	PHOSPHO2	2	170557703	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	190656	170557703	72641670	354	137345											
PHOSPHO2	493911	broad.mit.edu	37	chr2	170558124	170558124	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttccagaatgtctcaaaatCttgagcctatggaatattct	6	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170558124	G	G	170558124	3	3	168	1	0	0	0	0	1	0	0	0	11952	913	32	4	645	4	PHOSPHO2	2	170558124	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	421	170558124	72641249	355	137346											
MYO3B	140469	broad.mit.edu	37	chr2	171264477	171264477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaacttctttaagcaggaGtaagggtctaaattcaagaa	9	5	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171264477	T	T	171264477	1	4	168	0	1	0	0	0	0	0	0	0	10171	1044	36	3		3	MYO3B	2	171264477	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	706353	171264477	71934896	356	137347											
MYO3B	140469	broad.mit.edu	37	chr2	171371431	171371431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttgtttcattccacagGggacacttcaaaccaaagca	6	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171371431	T	T	171371431	3	4	168	1	0	0	0	0	1	0	0	0	10171	1246	43	2	3485	2	MYO3B	2	171371431	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	106954	171371431	71827942	357	137348											
ZAK	51776	broad.mit.edu	37	chr2	174131422	174131422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccacaggccatctcccGccaaaaccaataaagagaga	7	15	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174131422	T	T	174131422	3	4	168	1	0	0	0	0	1	0	0	0	17639	1087	38	3	2806	3	ZAK	2	174131422	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2759991	174131422	69067951	358	137349											
CDCA7	83879	broad.mit.edu	37	chr2	174232427	174232427	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgcctgccttctacttctCaaatctttcttgtaaaagtt	5	11	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174232427	G	G	174232427	1	3	168	0	1	0	0	0	0	0	0	0	3120	841	29	4		4	CDCA7	2	174232427	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	101005	174232427	68966946	359	137350											
HOXD13	3239	broad.mit.edu	37	chr2	176957939	176957939	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcccccagccaaagagtgCccagcacccacgcctgcagc	9	20	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176957939	T	T	176957939	2	4	168	1	0	0	0	0	0	0	0	1	7389	747	26	4		4	HOXD13	2	176957939	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	2725512	176957939	66241434	360	137351											
HOXD4	3233	broad.mit.edu	37	chr2	177016886	177016886	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgagtaggtgggggcgtgtgGagcttccatgggcgccgcaa	19	9	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177016886	C	C	177016886	1	2	168	0	1	0	0	0	0	0	0	0	7391	1189	41	4		4	HOXD4	2	177016886	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	58947	177016886	66182487	361	137352											
PDE11A	50940	broad.mit.edu	37	chr2	178494168	178494168	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttggctaccataacactGgcaggggaggatgaggcagt	14	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178494168	T	T	178494168	2	4	168	1	0	0	0	0	0	0	0	1	11725	1335	47	2		2	PDE11A	2	178494168	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1477282	178494168	64705205	362	137353											
PDE11A	50940	broad.mit.edu	37	chr2	178681583	178681583	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacagactgcttggcccaGgacttcttcacttgatcata	8	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178681583	A	A	178681583	2	1	168	1	0	0	0	0	0	0	0	1	11725	987	35	4		4	PDE11A	2	178681583	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	187415	178681583	64517790	363	137354											
OSBPL6	114880	broad.mit.edu	37	chr2	179214117	179214117	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctaatcgcacagaaagGtaagaacaaaaataatgcgc	8	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179214117	T	T	179214117	5	4	168	1	0	0	0	0	0	0	1	0	11375	1275	44	3	1314	3	OSBPL6	2	179214117	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	532534	179214117	63985256	364	137355											
TTN	7273	broad.mit.edu	37	chr2	179399495	179399495	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaatggtagagcttcttctGgtttggtaaatgatattttc	9	4	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179399495	C	C	179399495	2	2	168	1	0	0	0	0	0	0	0	1	16861	1335	47	4		4	TTN	2	179399495	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	185378	179399495	63799878	365	137356											
TTN	7273	broad.mit.edu	37	chr2	179407215	179407215	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaccgtccaattcaggtGgttcccaggaaatggtaatt	9	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179407215	T	T	179407215	3	4	168	1	0	0	0	0	1	0	0	0	16861	1348	47	2	10767	2	TTN	2	179407215	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	7720	179407215	63792158	366	137357											
TTN	7273	broad.mit.edu	37	chr2	179432396	179432396	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaattcatatctttgatcttCagtaagacctgacacagtaa	6	8	4	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179432396	T	T	179432396	3	4	168	1	0	0	0	0	1	0	0	0	16861	835	29	4	29664	4	TTN	2	179432396	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	25181	179432396	63766977	367	137358											
TTN	7273	broad.mit.edu	37	chr2	179439537	179439537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggtggttgctaactcaacCcaggtagtactgtcagtctg	11	10	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179439537	A	A	179439537	3	1	168	1	0	0	0	0	1	0	0	0	16861	624	22	2	36805	2	TTN	2	179439537	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	7141	179439537	63759836	368	137359											
TTN	7273	broad.mit.edu	37	chr2	179447086	179447086	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctactccatatttattttCagcacaaatacggaactgat	5	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179447086	A	A	179447086	4	1	168	1	0	0	0	0	0	1	0	0	16861	835	29	3	42078	3	TTN	2	179447086	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	7549	179447086	63752287	369	137360											
TTN	7273	broad.mit.edu	37	chr2	179447730	179447730	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttcagcagtaatggtatAgtctcctgagtccttccggt	9	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179447730	G	G	179447730	3	3	168	1	0	0	0	0	1	0	0	0	16861	420	15	5	42379	5	TTN	2	179447730	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	644	179447730	63751643	370	137361											
TTN	7273	broad.mit.edu	37	chr2	179450060	179450060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttatttgctctggcataaGgatctttggtggcactgaaa	11	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179450060	T	T	179450060	3	4	168	1	0	0	0	0	1	0	0	0	16861	1000	35	2	43784	2	TTN	2	179450060	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2330	179450060	63749313	371	137362											
TTN	7273	broad.mit.edu	37	chr2	179454814	179454814	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttagctgagatgatataCttgccatgatcagctctaac	7	9	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179454814	G	G	179454814	3	3	168	1	0	0	0	0	1	0	0	0	16861	564	20	4	46577	4	TTN	2	179454814	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4754	179454814	63744559	372	137363											
TTN	7273	broad.mit.edu	37	chr2	179455175	179455175	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaggcacattgcctaatgAgttcatctttattaatcctg	6	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179455175	T	T	179455175	3	4	168	1	0	0	0	0	1	0	0	0	16861	304	11	5	46938	5	TTN	2	179455175	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	361	179455175	63744198	373	137364											
TTN	7273	broad.mit.edu	37	chr2	179459375	179459375	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggacgctctggtacagcTgcgaatataagtataggaat	11	7	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179459375	A	A	179459375	5	1	168	1	0	0	0	0	0	0	1	0	16861	1594	55	5	50401	5	TTN	2	179459375	Splice_Site	SNP	T	TCGA-50-6590-01A-12D-1855-08	4200	179459375	63739998	374	137365											
TTN	7273	broad.mit.edu	37	chr2	179472295	179472295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctccccttcttctttgGtccatacttttgtaggtaca	6	13	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179472295	T	T	179472295	3	4	168	1	0	0	0	0	1	0	0	0	16861	1261	44	3	54917	3	TTN	2	179472295	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	12920	179472295	63727078	375	137366											
TTN	7273	broad.mit.edu	37	chr2	179495493	179495493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttttctaattcacacaGctcctttaggtgttgacaag	7	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179495493	T	T	179495493	1	4	168	0	1	0	0	0	0	0	0	0	16861	986	34	3		3	TTN	2	179495493	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	23198	179495493	63703880	376	137367											
TTN	7273	broad.mit.edu	37	chr2	179517754	179517754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcttctgaagcctaaagCcagtgacaaatacctttaac	6	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179517754	A	A	179517754	1	1	168	0	1	0	0	0	0	0	0	0	16861	754	26	3		3	TTN	2	179517754	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	22261	179517754	63681619	377	137368											
TTN	7273	broad.mit.edu	37	chr2	179526459	179526459	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagcacaagagatagatcatCtgaagcctaaaatcagtgac	9	8	3	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179526459	A	A	179526459	1	1	168	0	1	0	0	0	0	0	0	0	16861	928	32	3		3	TTN	2	179526459	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	8705	179526459	63672914	378	137369											
TTN	7273	broad.mit.edu	37	chr2	179552888	179552888	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcctctctttcttcttctCtataaactgaaatggacaca	3	13	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179552888	T	T	179552888	3	4	168	1	0	0	0	0	1	0	0	0	16861	913	32	4	72212	4	TTN	2	179552888	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	26429	179552888	63646485	379	137370											
TTN	7273	broad.mit.edu	37	chr2	179576812	179576812	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgcattttgtaagtcgTagtgggtctcaattttgtat	9	4	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179576812	C	C	179576812	3	2	168	1	0	0	0	0	1	0	0	0	16861	1638	57	5	76852	5	TTN	2	179576812	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	23924	179576812	63622561	380	137371											
TTN	7273	broad.mit.edu	37	chr2	179577502	179577502	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtatattctccactttgtgAtgtatctacatcgaacaact	5	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179577502	T	T	179577502	3	4	168	1	0	0	0	0	1	0	0	0	16861	333	12	5	77355	5	TTN	2	179577502	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	690	179577502	63621871	381	137372											
TTN	7273	broad.mit.edu	37	chr2	179586740	179586740	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacggatctccttgttatcTtttgaccaagtgattcgcat	9	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179586740	G	G	179586740	3	3	168	1	0	0	0	0	1	0	0	0	16861	1606	56	5	82019	5	TTN	2	179586740	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	9238	179586740	63612633	382	137373											
TTN	7273	broad.mit.edu	37	chr2	179587120	179587120	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatctacaaatgaagtctgtAgattttcatcgtctcttaaa	5	7	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179587120	T	T	179587120	3	4	168	1	0	0	0	0	1	0	0	0	16861	420	15	5	82279	5	TTN	2	179587120	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	380	179587120	63612253	383	137374											
TTN	7273	broad.mit.edu	37	chr2	179588665	179588665	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taattgcccatatctgaggaAtccagagaattcaactgcaa	7	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179588665	T	T	179588665	3	4	168	1	0	0	0	0	1	0	0	0	16861	98	4	5	83368	5	TTN	2	179588665	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1545	179588665	63610708	384	137375											
TTN	7273	broad.mit.edu	37	chr2	179639722	179639722	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgtaatcttcagcatcaGacgtatcaatggtcagtatg	9	8	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179639722	C	C	179639722	3	2	168	1	0	0	0	0	1	0	0	0	16861	942	33	4	104608	4	TTN	2	179639722	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	51057	179639722	63559651	385	137376											
TTN	7273	broad.mit.edu	37	chr2	179649066	179649066	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatgtggcaatagcactacCggctattgatgcctacatgg	10	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179649066	G	G	179649066	3	3	168	1	0	0	0	0	1	0	0	0	16861	652	23	4	108870	4	TTN	2	179649066	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	9344	179649066	63550307	386	137377											
TTN	7273	broad.mit.edu	37	chr2	179659381	179659381	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacctagagcaaaatacactCatacataagcatttattatt	3	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179659381	A	A	179659381	1	1	168	0	1	0	0	0	0	0	0	0	16861	841	29	3		3	TTN	2	179659381	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	10315	179659381	63539992	387	137378											
ITGA4	3676	broad.mit.edu	37	chr2	182344794	182344794	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaatatgttctcttcactatCgtgtatctggaggaggtttg	10	6	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182344794	G	G	182344794	1	3	168	0	1	0	0	0	0	0	0	0	7948	899	31	4		4	ITGA4	2	182344794	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2685413	182344794	60854579	388	137379											
ITGA4	3676	broad.mit.edu	37	chr2	182388919	182388919	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagatattagctttctcctgGatgtgagctcactcagcaga	9	9	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182388919	A	A	182388919	3	1	168	1	0	0	0	0	1	0	0	0	7948	1174	41	4	2269	4	ITGA4	2	182388919	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	44125	182388919	60810454	389	137380											
ITGA4	3676	broad.mit.edu	37	chr2	182396570	182396570	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatctataaattcagtcatAtaggcaggatagtatgaagg	9	4	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182396570	G	G	182396570	1	3	168	0	1	0	0	0	0	0	0	0	7948	464	16	5		5	ITGA4	2	182396570	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	7651	182396570	60802803	390	137381											
NEUROD1	4760	broad.mit.edu	37	chr2	182542406	182542406	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catatatcacttgaagcttgGagtatttgcactttgcagca	8	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182542406	C	C	182542406	1	2	168	0	1	0	0	0	0	0	0	0	10443	1189	41	4		4	NEUROD1	2	182542406	3'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	145836	182542406	60656967	391	137382											
DNAJC10	54431	broad.mit.edu	37	chr2	183620958	183620958	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattttggataagagatactCaacctgtaccaacaatttgc	6	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183620958	T	T	183620958	1	4	168	0	1	0	0	0	0	0	0	0	4669	841	29	4		4	DNAJC10	2	183620958	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1078552	183620958	59578415	392	137383											
ITGAV	3685	broad.mit.edu	37	chr2	187531437	187531437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctctcctttagctcttaGctggtcttcgtttcagtgtg	8	12	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187531437	T	T	187531437	3	4	168	1	0	0	0	0	1	0	0	0	7958	971	34	3	2310	3	ITGAV	2	187531437	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3910479	187531437	55667936	393	137384											
FAM171B	165215	broad.mit.edu	37	chr2	187615999	187615999	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatataagtgcaggggatcGcatacctgcttggacatttg	12	7	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187615999	C	C	187615999	3	2	168	1	0	0	0	0	1	0	0	0	5536	1087	38	4	881	4	FAM171B	2	187615999	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	84562	187615999	55583374	394	137385											
FAM171B	165215	broad.mit.edu	37	chr2	187626765	187626765	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctactttgccaagaaagGgacagttagtctatggccaa	10	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187626765	A	A	187626765	3	1	168	1	0	0	0	0	1	0	0	0	5536	1233	43	4	1726	4	FAM171B	2	187626765	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	10766	187626765	55572608	395	137386											
FAM171B	165215	broad.mit.edu	37	chr2	187627596	187627596	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcgtgctgtttattcttGcttcttgttgtaaattgcag	9	7	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187627596	T	T	187627596	1	4	168	0	1	0	0	0	0	0	0	0	5536	1334	46	3		3	FAM171B	2	187627596	3'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	831	187627596	55571777	396	137387											
COL5A2	1290	broad.mit.edu	37	chr2	189927656	189927656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagctccctagtatcacaCacagatatttgtgaggtgag	11	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189927656	A	A	189927656	1	1	168	0	1	0	0	0	0	0	0	0	3729	493	17	3		3	COL5A2	2	189927656	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2300060	189927656	53271717	397	137388											
COL5A2	1290	broad.mit.edu	37	chr2	189944715	189944715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagattaccttggaaccagGtgctccaacttcacctttag	7	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189944715	T	T	189944715	3	4	168	1	0	0	0	0	1	0	0	0	3729	1261	44	3	3714	3	COL5A2	2	189944715	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	17059	189944715	53254658	398	137389											
COL5A2	1290	broad.mit.edu	37	chr2	189948754	189948754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggatttccatttctgcCaggttcaccctttatggaaa	7	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189948754	A	A	189948754	3	1	168	1	0	0	0	0	1	0	0	0	3729	594	21	2	3863	2	COL5A2	2	189948754	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4039	189948754	53250619	399	137390											
PMS1	5378	broad.mit.edu	37	chr2	190682749	190682749	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctgccaacaggtacaaCtgtaactgctttaagattat	7	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190682749	G	G	190682749	3	3	168	1	0	0	0	0	1	0	0	0	12237	565	20	4	439	4	PMS1	2	190682749	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	733995	190682749	52516624	400	137391											
MSTN	2660	broad.mit.edu	37	chr2	190927318	190927318	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacacagagttgcagttttTgcatgattttaaaatcaata	6	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190927318	A	A	190927318	3	1	168	1	0	0	0	0	1	0	0	0	9987	1812	63	5	1134	5	MSTN	2	190927318	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	244569	190927318	52272055	401	137392											
ANKRD44	91526	broad.mit.edu	37	chr2	197878319	197878319	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gataagcgcttccacacattCtgtgtgtcctttaaaggcag	9	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197878319	G	G	197878319	3	3	168	1	0	0	0	0	1	0	0	0	672	922	32	4	1030	4	ANKRD44	2	197878319	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	6951001	197878319	45321054	402	137393											
ALS2	57679	broad.mit.edu	37	chr2	202582828	202582828	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtctgtctttatcactctCatatagactaggtttgaagt	8	7	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202582828	T	T	202582828	3	4	168	1	0	0	0	0	1	0	0	0	550	835	29	4	1209	4	ALS2	2	202582828	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4704509	202582828	40616545	403	137394											
ZDBF2	57683	broad.mit.edu	37	chr2	207146608	207146608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatattgcagttattgccGtgtgcagtataataacctgg	11	6	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207146608	T	T	207146608	3	4	168	1	0	0	0	0	1	0	0	0	17725	1145	40	3	37	3	ZDBF2	2	207146608	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4563780	207146608	36052765	404	137395											
ADAM23	8745	broad.mit.edu	37	chr2	207474736	207474736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatttaagtaagcaacgcCgcatgtcttcttctcagtgg	11	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207474736	A	A	207474736	1	1	168	0	1	0	0	0	0	0	0	0	245	667	23	1		1	ADAM23	2	207474736	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	328128	207474736	35724637	405	137396											
MYL1	4632	broad.mit.edu	37	chr2	211163125	211163125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatacttccacacttcttGgaaaaattgatgggttacct	6	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211163125	T	T	211163125	1	4	168	0	1	0	0	0	0	0	0	0	10137	1363	47	2		2	MYL1	2	211163125	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3688389	211163125	32036248	406	137397											
XRCC5	7520	broad.mit.edu	37	chr2	216983579	216983579	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattttggccaagatgttcAaagtataaagtgtatcaggg	10	5	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216983579	C	C	216983579	1	2	168	0	1	0	0	0	0	0	0	0	17583	145	5	5		5	XRCC5	2	216983579	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	5820454	216983579	26215794	407	137398											
TNP1	7141	broad.mit.edu	37	chr2	217724358	217724358	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctgcttggtgctgtgTgaagcgcaccagggcagagc	16	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217724358	A	A	217724358	1	1	168	0	1	0	0	0	0	0	0	0	16456	1711	59	5		5	TNP1	2	217724358	3'UTR	SNP	T	TCGA-50-6590-01A-12D-1855-08	740779	217724358	25475015	408	137399											
FAM134A	79137	broad.mit.edu	37	chr2	220045542	220045542	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttccttggactgacccaGagggaagactatgctctctc	9	12	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220045542	C	C	220045542	1	2	168	0	1	0	0	0	0	0	0	0	5491	957	33	4		4	FAM134A	2	220045542	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2321184	220045542	23153831	409	137400											
CUL3	8452	broad.mit.edu	37	chr2	225346808	225346808	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaatttcctgaaatttcatCagattaacataattagactt	4	6	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225346808	T	T	225346808	1	4	168	0	1	0	0	0	0	0	0	0	4089	841	29	4		4	CUL3	2	225346808	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5301266	225346808	17852565	410	137401											
DOCK10	55619	broad.mit.edu	37	chr2	225670017	225670017	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatcgaagagttgagccaatCaaagacaagggtcttgggat	12	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225670017	G	G	225670017	3	3	168	1	0	0	0	0	1	0	0	0	4725	825	29	4	2687	4	DOCK10	2	225670017	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	323209	225670017	17529356	411	137402											
DOCK10	55619	broad.mit.edu	37	chr2	225729692	225729692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccaaagccacagaagccCccaagagcatctgtctgaca	7	14	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225729692	A	A	225729692	3	1	168	1	0	0	0	0	1	0	0	0	4725	623	22	2	5370	2	DOCK10	2	225729692	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	59675	225729692	17469681	412	137403											
IRS1	3667	broad.mit.edu	37	chr2	227661713	227661713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagaccctcctctgggtagGagcgggtgggcacgaaggcg	17	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227661713	T	T	227661713	3	4	168	1	0	0	0	0	1	0	0	0	7910	1174	41	3	1990	3	IRS1	2	227661713	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1932021	227661713	15537660	413	137404											
C2orf83	56918	broad.mit.edu	37	chr2	228476285	228476285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagaggccatggcccgcaGggtgaatgaaggtcagcccg	17	11	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228476285	T	T	228476285	3	4	168	1	0	0	0	0	1	0	0	0	2220	1000	35	2	178	2	C2orf83	2	228476285	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	814572	228476285	14723088	414	137405											
SPHKAP	80309	broad.mit.edu	37	chr2	228882720	228882720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgttttccactggagttGtcaaggcaaatcgctgcaat	11	8	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228882720	T	T	228882720	3	4	168	1	0	0	0	0	1	0	0	0	15166	1368	48	3	2276	3	SPHKAP	2	228882720	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	406435	228882720	14316653	415	137406											
SPHKAP	80309	broad.mit.edu	37	chr2	228884459	228884459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtttcttgtgtcttcatGgtctcctgggtttaggttgc	12	8	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228884459	T	T	228884459	3	4	168	1	0	0	0	0	1	0	0	0	15166	1348	47	2	4015	2	SPHKAP	2	228884459	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1739	228884459	14314914	416	137407											
SPHKAP	80309	broad.mit.edu	37	chr2	228973499	228973499	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaacatgggtacatgtgcCcgcttccctgctttatcaga	8	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228973499	T	T	228973499	1	4	168	0	1	0	0	0	0	0	0	0	15166	638	22	4		4	SPHKAP	2	228973499	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	89040	228973499	14225874	417	137408											
TRIP12	9320	broad.mit.edu	37	chr2	230654584	230654584	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaacagaagttgttatagtCaacgcttggaatcttattag	9	5	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230654584	T	T	230654584	1	4	168	0	1	0	0	0	0	0	0	0	16681	841	29	4		4	TRIP12	2	230654584	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1681085	230654584	12544789	418	137409											
SP110	3431	broad.mit.edu	37	chr2	231065715	231065715	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttagtaaatgccccttGggaaacaccatggagaatct	9	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231065715	A	A	231065715	1	1	168	0	1	0	0	0	0	0	0	0	15075	1363	47	4		4	SP110	2	231065715	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	411131	231065715	12133658	419	137410											
SP140L	93349	broad.mit.edu	37	chr2	231267732	231267732	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctctgagcctccctcatCtgcccaaaaacaaatcctca	3	16	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231267732	G	G	231267732	1	3	168	0	1	0	0	0	0	0	0	0	15077	928	32	4		4	SP140L	2	231267732	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	202017	231267732	11931641	420	137411											
ARMC9	80210	broad.mit.edu	37	chr2	232104712	232104712	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcagtaaccagatgcgGcagagcctggcgcatagtgt	13	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232104712	T	T	232104712	2	4	168	1	0	0	0	0	0	0	0	1	962	1190	42	3		3	ARMC9	2	232104712	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	836980	232104712	11094661	421	137412											
ALPPL2	251	broad.mit.edu	37	chr2	233272500	233272500	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagctggggcccgctgtggGgtcagggccaggtgacagac	19	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233272500	A	A	233272500	1	1	168	0	1	0	0	0	0	0	0	0	549	1247	43	4		4	ALPPL2	2	233272500	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1167788	233272500	9926873	422	137413											
GIGYF2	26058	broad.mit.edu	37	chr2	233671355	233671355	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttctccaggtccagctccCcctcctcatatggtaagtac	6	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233671355	T	T	233671355	2	4	168	1	0	0	0	0	0	0	0	1	6442	610	22	4		4	GIGYF2	2	233671355	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	398855	233671355	9528018	423	137414											
UGT1A5	54579	broad.mit.edu	37	chr2	234663729	234663729	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccatagcggtcatagatatCgcgtttctacgcgtccgaca	10	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234663729	G	G	234663729	1	3	168	0	1	0	0	0	0	0	0	0	17074	899	31	4		4	UGT1A5	2	234663729	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	992374	234663729	8535644	424	137415											
AGAP1	116987	broad.mit.edu	37	chr2	236617781	236617781	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcattttgacttggcctttaCgtgagttatggtgtctgact	11	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236617781	T	T	236617781	1	4	168	0	1	0	0	0	0	0	0	0	366	551	19	4		4	AGAP1	2	236617781	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1954052	236617781	6581592	425	137416											
COL6A3	1293	broad.mit.edu	37	chr2	238269725	238269725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgggtaaggatcaaggaGggggtgaaattttagggact	16	3	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238269725	T	T	238269725	1	4	168	0	1	0	0	0	0	0	0	0	3733	1015	35	2		2	COL6A3	2	238269725	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1651944	238269725	4929648	426	137417											
NEU4	129807	broad.mit.edu	37	chr2	242755785	242755785	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccgtgccccccgggcccaCcctgctggcctttgtggagc	12	20	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242755785	G	G	242755785	3	3	168	1	0	0	0	0	1	0	0	0	10439	507	18	4	149	4	NEU4	2	242755785	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4486060	242755785	443588	427	137418											
C2orf85	285093	broad.mit.edu	37	chr2	242815036	242815036	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacatcactgaaggcaaagaGaaggaaggtggcctggtcac	14	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242815036	C	C	242815036	3	2	168	1	0	0	0	0	1	0	0	0	2222	933	33	4	1335	4	C2orf85	2	242815036	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	59251	242815036	384337	428	137419											
CHL1	10752	broad.mit.edu	37	chr3	403500	403501	+	Intron	INS	-	A	A													cagtcgtgtcctggtaagccINSggtggctcatggttttctta							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	403501	A	A	403500	6	5	168	0	1	1	1	0	0	0	0	0	3380	667	23	0		0	CHL1	3	403500	Intron	INS	-	TCGA-50-6590-01A-12D-1855-08		403500	197618930	429	137420											
IL5RA	3568	broad.mit.edu	37	chr3	3144499	3144499	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaattgacaggtgggagaaGtgaaactgttgattcaaaga	13	3	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3144499	T	T	3144499	3	4	168	1	0	0	0	0	1	0	0	0	7770	1029	36	3	1236	3	IL5RA	3	3144499	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2740999	3144499	194877931	430	137421											
TTLL3	26140	broad.mit.edu	37	chr3	9839507	9839507	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgaggggtgcagcacacaGagatggctgctgtctagaag	16	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9839507	C	C	9839507	1	2	168	0	1	0	0	0	0	0	0	0	16854	957	33	4		4	TTLL3	3	9839507	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6695008	9839507	188182923	431	137422											
FANCD2	2177	broad.mit.edu	37	chr3	10084739	10084739	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttactttctgcaggtaatTtctgagcttcgggagaagtt	10	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10084739	C	C	10084739	2	2	168	1	0	0	0	0	0	0	0	1	5722	1829	64	5		5	FANCD2	3	10084739	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	245232	10084739	187937691	432	137423											
IRAK2	3656	broad.mit.edu	37	chr3	10255175	10255175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctctacagacagcctGttcaagtccaggatcaatcg	7	12	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10255175	T	T	10255175	3	4	168	1	0	0	0	0	1	0	0	0	7893	1377	48	3	753	3	IRAK2	3	10255175	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	170436	10255175	187767255	433	137424											
PPARG	5468	broad.mit.edu	37	chr3	12458631	12458631	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcgacttggcaatatttatTgctgtcattattctcagtgg	9	7	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12458631	A	A	12458631	2	1	168	1	0	0	0	0	0	0	0	1	12395	1800	63	5		5	PPARG	3	12458631	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	2203456	12458631	185563799	434	137425											
GALNTL2	117248	broad.mit.edu	37	chr3	16261186	16261186	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatcccgtgcctccatgCcagtctgaggaaggtggctg	13	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16261186	A	A	16261186	1	1	168	0	1	0	0	0	0	0	0	0	6284	754	26	3		3	GALNTL2	3	16261186	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3802555	16261186	181761244	435	137426											
ZNF385D	79750	broad.mit.edu	37	chr3	21462738	21462738	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacagcacaggagtgtgggCggtccgaatgggtccaggag	17	8	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21462738	T	T	21462738	3	4	168	1	0	0	0	0	1	0	0	0	18004	768	27	4	35	4	ZNF385D	3	21462738	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	5201552	21462738	176559692	436	137427											
ZNF385D	79750	broad.mit.edu	37	chr3	21478689	21478689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattgctggtgtccctgcaGtaccgtctgtattcaaaata	8	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21478689	T	T	21478689	3	4	168	1	0	0	0	0	1	0	0	0	18004	1029	36	3	757	3	ZNF385D	3	21478689	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	15951	21478689	176543741	437	137428											
ZCWPW2	152098	broad.mit.edu	37	chr3	28454784	28454784	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataactgctcaatttctgaAgaagacttccctgaagagtc	7	9	2	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28454784	G	G	28454784	2	3	168	1	0	0	0	0	0	0	0	1	17724	69	3	5		5	ZCWPW2	3	28454784	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	6976095	28454784	169567646	438	137429											
CNOT10	25904	broad.mit.edu	37	chr3	32745455	32745455	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctttccaagctttcacaGtaagaaatggcttctcttag	7	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32745455	T	T	32745455	5	4	168	1	0	0	0	0	0	0	1	0	3650	1043	36	3	124	3	CNOT10	3	32745455	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	4290671	32745455	165276975	439	137430											
GLB1	2720	broad.mit.edu	37	chr3	33059851	33059851	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggctgaaaaggtgagCaaagaccccaaatgctgtgt	12	9	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33059851	G	G	33059851	1	3	168	0	1	0	0	0	0	0	0	0	6491	725	25	4		4	GLB1	3	33059851	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	314396	33059851	164962579	440	137431											
TTC21A	199223	broad.mit.edu	37	chr3	39149412	39149412	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactccccgcccctgacccaGagaccgtctgccctgctact	8	20	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39149412	C	C	39149412	1	2	168	0	1	0	0	0	0	0	0	0	16813	957	33	4		4	TTC21A	3	39149412	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6089561	39149412	158873018	441	137432											
SLC25A38	54977	broad.mit.edu	37	chr3	39433348	39433348	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctctctttgcagagtgGgaaatatggctatgagagta	13	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39433348	T	T	39433348	3	4	168	1	0	0	0	0	1	0	0	0	14616	1232	43	2	479	2	SLC25A38	3	39433348	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	283936	39433348	158589082	442	137433											
SLC6A20	54716	broad.mit.edu	37	chr3	45817564	45817564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagggaggtggccctgagCggagactcttggaagagaag	19	6	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45817564	A	A	45817564	1	1	168	0	1	0	0	0	0	0	0	0	14798	783	27	3		3	SLC6A20	3	45817564	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	6384216	45817564	152204866	443	137434											
ALS2CL	259173	broad.mit.edu	37	chr3	46716186	46716186	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagagctctgagtagaagcTgggcagcatgaggggcagca	17	7	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46716186	A	A	46716186	3	1	168	1	0	0	0	0	1	0	0	0	551	1580	55	5	586	5	ALS2CL	3	46716186	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	898622	46716186	151306244	444	137435											
SMARCC1	6599	broad.mit.edu	37	chr3	47721882	47721882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcttgaagagcccctaCcgcacacaggcaaataaaca	9	12	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47721882	A	A	47721882	1	1	168	0	1	0	0	0	0	0	0	0	14889	522	18	3		3	SMARCC1	3	47721882	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1005696	47721882	150300548	445	137436											
QARS	5859	broad.mit.edu	37	chr3	49138142	49138142	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatctgtgaactcccacatCatccatcagccccacaatcc	3	19	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49138142	A	A	49138142	1	1	168	0	1	0	0	0	0	0	0	0	12979	841	29	3		3	QARS	3	49138142	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1416260	49138142	148884288	446	137437											
LOC646498	646498	broad.mit.edu	37	chr3	49227502	49227502	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctggggcttggctgCaaggtggtattctctagcac	16	8	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49227502	A	A	49227502	1	1	168	0	1	0	0	0	0	0	0	0	8968	710	25	3		3	LOC646498	3	49227502	5'Flank	SNP	C	TCGA-50-6590-01A-12D-1855-08	89360	49227502	148794928	447	137438											
BSN	8927	broad.mit.edu	37	chr3	49695595	49695595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctgccaaagagagattctCcctctaccagcaccaggggg	11	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49695595	A	A	49695595	3	1	168	1	0	0	0	0	1	0	0	0	1539	855	30	3	8624	3	BSN	3	49695595	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	468093	49695595	148326835	448	137439											
RNF123	63891	broad.mit.edu	37	chr3	49737835	49737835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgtcagtcttcactggGgtcgggaagatacggggaga	17	7	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49737835	T	T	49737835	1	4	168	0	1	0	0	0	0	0	0	0	13544	1247	43	2		2	RNF123	3	49737835	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	42240	49737835	148284595	449	137440											
UBA7	7318	broad.mit.edu	37	chr3	49850017	49850017	+	Intron	DEL	C	-	-													ctcagggttgcctggacctgCcttccacaggccctggcagc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49850017	-	-	49850017	6	5	168	0	1	1	0	1	0	0	0	0	16959	754	26	0		0	UBA7	3	49850017	Intron	DEL	C	TCGA-50-6590-01A-12D-1855-08	112182	49850017	148172413	450	137441											
RBM6	10180	broad.mit.edu	37	chr3	50114546	50114546	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcgaagagtcatgtttgctCgatataaagaactcgattaa	8	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50114546	A	A	50114546	2	1	168	1	0	0	0	0	0	0	0	1	13252	876	31	3		3	RBM6	3	50114546	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	264529	50114546	147907884	451	137442											
POC1A	25886	broad.mit.edu	37	chr3	52130543	52130543	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtccaaatgcgggaccaagTgcagatgacgggatgacggg	17	8	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52130543	A	A	52130543	1	1	168	0	1	0	0	0	0	0	0	0	12270	1711	59	5		5	POC1A	3	52130543	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	2015997	52130543	145891887	452	137443											
DNAH1	25981	broad.mit.edu	37	chr3	52410018	52410018	+	Intron	DEL	G	-	-													gggagcgtgtgcgtaagtgtGggcctgggcgggaatggggc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52410018	-	-	52410018	6	5	168	0	1	1	0	1	0	0	0	0	4637	1363	47	0		0	DNAH1	3	52410018	Intron	DEL	G	TCGA-50-6590-01A-12D-1855-08	279475	52410018	145612412	453	137444											
STAB1	23166	broad.mit.edu	37	chr3	52555803	52555803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagggtgggtggaacgggCagaggccaggaaggcaacta	18	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52555803	A	A	52555803	1	1	168	0	1	0	0	0	0	0	0	0	15355	725	25	3		3	STAB1	3	52555803	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	145785	52555803	145466627	454	137445											
ITIH1	3697	broad.mit.edu	37	chr3	52822006	52822006	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccccctcccatcagcgttCgtgctgtcagccttgcagcc	8	19	2	0	rs145881645	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52822006	G	G	52822006	3	3	168	1	0	0	0	0	1	0	0	0	7973	883	31	4	1995	4	ITIH1	3	52822006	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	266203	52822006	145200424	455	137446											
CACNA1D	776	broad.mit.edu	37	chr3	53694253	53694253	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggctttgatgtcaaagccctCcgtgcctttcgagtgttgcg	12	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53694253	T	T	53694253	2	4	168	1	0	0	0	0	0	0	0	1	2567	842	30	4		4	CACNA1D	3	53694253	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	872247	53694253	144328177	456	137447											
CACNA1D	776	broad.mit.edu	37	chr3	53760933	53760933	+	Missense_Mutation	SNP	G	T	T													caggcgaagactggaatgctGtgatgtacgatggcatcatg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53760933	T	T	53760933	3	4	168	1	0	0	0	0	1	0	0	0	2567	1377	48	3	2358	3	CACNA1D	3	53760933	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	66680	53760933	144261497	457	137448	592	2									
CACNA1D	776	broad.mit.edu	37	chr3	53760942	53760942	+	Missense_Mutation	SNP	G	A	A													actggaatgctgtgatgtacGatggcatcatggcttacggg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53760942	A	A	53760942	3	1	168	1	0	0	0	0	1	0	0	0	2567	1058	37	4	2367	4	CACNA1D	3	53760942	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	9	53760942	144261488	458	137449	592	2									
CACNA1D	776	broad.mit.edu	37	chr3	53839168	53839168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcctactacctcccacccCagcatgtgaggccagatttt	7	16	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53839168	A	A	53839168	3	1	168	1	0	0	0	0	1	0	0	0	2567	594	21	2	6094	2	CACNA1D	3	53839168	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	78226	53839168	144183262	459	137450											
C3orf63	23272	broad.mit.edu	37	chr3	56655658	56655658	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcattttaaatgtagaaaatCaaatccttcacatttgattt	3	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56655658	A	A	56655658	1	1	168	0	1	0	0	0	0	0	0	0	2261	841	29	3		3	C3orf63	3	56655658	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	2816490	56655658	141366772	460	137451											
FAM19A1	407738	broad.mit.edu	37	chr3	68194260	68194260	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaattgctacacccccagTgtatggtcagcgtctagctt	10	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68194260	G	G	68194260	1	3	168	0	1	0	0	0	0	0	0	0	5578	1711	59	5		5	FAM19A1	3	68194260	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	11538602	68194260	129828170	461	137452											
FOXP1	27086	broad.mit.edu	37	chr3	71037319	71037319	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattacaaattacgctatgGcaccacagcacatgataaaa	5	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71037319	A	A	71037319	1	1	168	0	1	0	0	0	0	0	0	0	6086	1218	42	4		4	FOXP1	3	71037319	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2843059	71037319	126985111	462	137453											
CNTN3	5067	broad.mit.edu	37	chr3	74315790	74315791	+	Missense_Mutation	DNP	CT	AA	AA													cgttattttgactgctagtcCtatagaaaacctaaaatgca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74315791	AA	AA	74315790	3	1	168	1	0	0	0	0	1	0	0	0	3674	681	24	2	266	2	CNTN3	3	74315790	Missense_Mutation	DNP	CT	TCGA-50-6590-01A-12D-1855-08	3278471	74315790	123706640	463	137454											
CNTN3	5067	broad.mit.edu	37	chr3	74351765	74351765	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtatgctcacatactatctCatcatggtttttcctccagt	5	12	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74351765	A	A	74351765	1	1	168	0	1	0	0	0	0	0	0	0	3674	841	29	3		3	CNTN3	3	74351765	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	35975	74351765	123670665	464	137455											
EPHA6	285220	broad.mit.edu	37	chr3	96706224	96706224	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataggcccattcacacataCcaggtatgtaatgtaatgga	8	8	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96706224	T	T	96706224	2	4	168	1	0	0	0	0	0	0	0	1	5213	518	18	4		4	EPHA6	3	96706224	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	22354459	96706224	101316206	465	137456											
EPHA6	285220	broad.mit.edu	37	chr3	97184997	97184997	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaggttgttttagaaaGgtaagcacatttccactcca	8	7	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97184997	A	A	97184997	1	1	168	0	1	0	0	0	0	0	0	0	5213	1015	35	4		4	EPHA6	3	97184997	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	478773	97184997	100837433	466	137457											
EPHA6	285220	broad.mit.edu	37	chr3	97311618	97311618	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttttctgccaccatataCagcagtaggattgtgctcat	8	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97311618	T	T	97311618	1	4	168	0	1	0	0	0	0	0	0	0	5213	493	17	4		4	EPHA6	3	97311618	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	126621	97311618	100710812	467	137458											
CRYBG3	131544	broad.mit.edu	37	chr3	97605331	97605331	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaaaaaaaaaaagggtgagGagaaacaatatttcctttat	7	3	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97605331	T	T	97605331	1	4	168	0	1	0	0	0	0	0	0	0	3945	1189	41	3		3	CRYBG3	3	97605331	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	293713	97605331	100417099	468	137459											
CRYBG3	131544	broad.mit.edu	37	chr3	97608237	97608237	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcccatgaacttaaaggtAagtcttggactgatttttgt	9	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97608237	T	T	97608237	1	4	168	0	1	0	0	0	0	0	0	0	3945	377	13	5		5	CRYBG3	3	97608237	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	2906	97608237	100414193	469	137460											
OR5H15	403274	broad.mit.edu	37	chr3	97888239	97888240	+	Missense_Mutation	DNP	GG	TT	TT													ttagaaaagaaatctgataaGggtgtaaggaaagccttttc					rs138282085	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	97888240	TT	TT	97888239	3	4	168	1	0	0	0	0	1	0	0	0	11255	991	35	2	698	2	OR5H15	3	97888239	Missense_Mutation	DNP	GG	TCGA-50-6590-01A-12D-1855-08	280002	97888239	100134191	470	137461											
ST3GAL6	10402	broad.mit.edu	37	chr3	98512693	98512693	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatatgttggatgcactcgtCaaataattatgtatactgtc	7	6	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98512693	G	G	98512693	1	3	168	0	1	0	0	0	0	0	0	0	15337	841	29	4		4	ST3GAL6	3	98512693	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	624454	98512693	99509737	471	137462											
FILIP1L	11259	broad.mit.edu	37	chr3	99568152	99568154	+	In_Frame_Del	DEL	TTC	-	-													aaatacttgaggatcggaaaTtcttcttccattgagactag							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99568154	-	-	99568152	7	5	168	1	0	1	0	1	0	0	0	0	5952	1493	52	0	1068	0	FILIP1L	3	99568152	In_Frame_Del	DEL	TTC	TCGA-50-6590-01A-12D-1855-08	1055459	99568152	98454278	472	137463											
ZBTB11	27107	broad.mit.edu	37	chr3	101383713	101383713	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaccttgtacccatctcacCtcccaaataattttcattat	1	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101383713	G	G	101383713	1	3	168	0	1	0	0	0	0	0	0	0	17650	696	24	4		4	ZBTB11	3	101383713	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1815561	101383713	96638717	473	137464											
IFT57	55081	broad.mit.edu	37	chr3	107882459	107882459	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttaagtaggtttcttgaaGagctatttttctcttgctca	8	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107882459	C	C	107882459	1	2	168	0	1	0	0	0	0	0	0	0	7632	957	33	4		4	IFT57	3	107882459	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6498746	107882459	90139971	474	137465											
KIAA1524	57650	broad.mit.edu	37	chr3	108304034	108304034	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgatttgatgtaaatagtCgtgtgagtttctgtccagaa	10	5	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108304034	T	T	108304034	3	4	168	1	0	0	0	0	1	0	0	0	8309	884	31	4	2669	4	KIAA1524	3	108304034	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	421575	108304034	89718396	475	137466											
GRAMD1C	54762	broad.mit.edu	37	chr3	113638696	113638696	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacaacatatggagttacaActgatcaaaaaagagatcac	6	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113638696	G	G	113638696	1	3	168	0	1	0	0	0	0	0	0	0	6815	58	2	5		5	GRAMD1C	3	113638696	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	5334662	113638696	84383734	476	137467											
C3orf30	152405	broad.mit.edu	37	chr3	118866929	118866929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattttctccaactccttgTgttaagatctcatcaacatc	4	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118866929	A	A	118866929	1	1	168	0	1	0	0	0	0	0	0	0	2242	1711	59	5		5	C3orf30	3	118866929	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	5228233	118866929	79155501	477	137468											
PLA1A	51365	broad.mit.edu	37	chr3	119337151	119337151	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctatccaatttgggaaaaGaaaattaagcaatgaggtgc	9	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119337151	C	C	119337151	1	2	168	0	1	0	0	0	0	0	0	0	12083	957	33	4		4	PLA1A	3	119337151	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	470222	119337151	78685279	478	137469											
SLC15A2	6565	broad.mit.edu	37	chr3	121641883	121641883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccattcttcctccttttcGcagaagcagctcattatgga	7	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121641883	T	T	121641883	1	4	168	0	1	0	0	0	0	0	0	0	14512	1102	38	3		3	SLC15A2	3	121641883	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2304732	121641883	76380547	479	137470											
CASR	846	broad.mit.edu	37	chr3	121980765	121980765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacgggcaagatctggctgGccagcgaggcctgggccagc	16	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121980765	T	T	121980765	3	4	168	1	0	0	0	0	1	0	0	0	2708	1203	42	3	893	3	CASR	3	121980765	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	338882	121980765	76041665	480	137471											
ALDH1L1	10840	broad.mit.edu	37	chr3	125854372	125854372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcaggtacatgttgggcTcccacctgtacatcagccgg	12	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125854372	C	C	125854372	1	2	168	0	1	0	0	0	0	0	0	0	494	1566	54	5		5	ALDH1L1	3	125854372	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	3873607	125854372	72168058	481	137472											
COPG	22820	broad.mit.edu	37	chr3	128987847	128987847	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagatcttccagggtgAgtcacagtggttgggggatg	18	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128987847	C	C	128987847	1	2	168	0	1	0	0	0	0	0	0	0	3763	319	11	5		5	COPG	3	128987847	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	3133475	128987847	69034583	482	137473											
COPG	22820	broad.mit.edu	37	chr3	128987863	128987863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagtcacagtggttgggGgatgcttgggacctgggctt	19	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128987863	T	T	128987863	1	4	168	0	1	0	0	0	0	0	0	0	3763	1247	43	2		2	COPG	3	128987863	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	16	128987863	69034567	483	137474											
COL6A6	131873	broad.mit.edu	37	chr3	130289710	130289710	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgtttgtcattgatagctCtggcagtattgactatgatg	11	5	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130289710	A	A	130289710	3	1	168	1	0	0	0	0	1	0	0	0	3735	913	32	3	2472	3	COL6A6	3	130289710	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1301847	130289710	67732720	484	137475											
COL6A6	131873	broad.mit.edu	37	chr3	130307991	130307991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtgcattggaggagatGgcacaatgggagatcctgga	16	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130307991	T	T	130307991	3	4	168	1	0	0	0	0	1	0	0	0	3735	1348	47	2	4225	2	COL6A6	3	130307991	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	18281	130307991	67714439	485	137476											
UBA5	79876	broad.mit.edu	37	chr3	132390744	132390744	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtatgcattattctttttGgaatattcttcactgttaga	7	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132390744	A	A	132390744	1	1	168	0	1	0	0	0	0	0	0	0	16956	1363	47	4		4	UBA5	3	132390744	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2082753	132390744	65631686	486	137477											
NPHP3	27031	broad.mit.edu	37	chr3	132418735	132418735	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatctctttctgagcatatCaataggtaacaaatggaaaa	6	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132418735	A	A	132418735	1	1	168	0	1	0	0	0	0	0	0	0	10675	841	29	3		3	NPHP3	3	132418735	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	27991	132418735	65603695	487	137478											
TF	7018	broad.mit.edu	37	chr3	133473544	133473544	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaggagtctgggtgccctcGagcagctgcctctgctccag	14	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133473544	A	A	133473544	1	1	168	0	1	0	0	0	0	0	0	0	15908	1073	37	4		4	TF	3	133473544	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1054809	133473544	64548886	488	137479											
TF	7018	broad.mit.edu	37	chr3	133487023	133487023	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaggtgagtcttttaacCctgaaacaaatagaataata	6	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133487023	T	T	133487023	1	4	168	0	1	0	0	0	0	0	0	0	15908	638	22	4		4	TF	3	133487023	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	13479	133487023	64535407	489	137480											
TF	7018	broad.mit.edu	37	chr3	133487079	133487079	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatttcttttaggaactaagGtaagattcttaggttcctat	8	5	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133487079	C	C	133487079	1	2	168	0	1	0	0	0	0	0	0	0	15908	1276	44	4		4	TF	3	133487079	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	56	133487079	64535351	490	137481											
PPP2R3A	5523	broad.mit.edu	37	chr3	135768223	135768223	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtaattttcatctccttttGaaaatgggttctaattttgg	8	5	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135768223	C	C	135768223	1	2	168	0	1	0	0	0	0	0	0	0	12489	1305	45	4		4	PPP2R3A	3	135768223	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2281144	135768223	62254207	491	137482											
MSL2	55167	broad.mit.edu	37	chr3	135913854	135913854	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactgtcggaagtaaggcaaGagcctgttaatctcagtaaa	11	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135913854	C	C	135913854	2	2	168	1	0	0	0	0	0	0	0	1	9972	929	33	4		4	MSL2	3	135913854	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	145631	135913854	62108576	492	137483											
PIK3CB	5291	broad.mit.edu	37	chr3	138374338	138374338	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaaactgtttgagtgcttCttcttcactcttccctaatg	5	11	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138374338	T	T	138374338	3	4	168	1	0	0	0	0	1	0	0	0	12009	922	32	4	108	4	PIK3CB	3	138374338	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2460484	138374338	59648092	493	137484											
COPB2	9276	broad.mit.edu	37	chr3	139077137	139077137	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccacaagtgaagatataTatgaagacaagggaatttac	8	5	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139077137	C	C	139077137	1	2	168	0	1	0	0	0	0	0	0	0	3761	1421	49	5		5	COPB2	3	139077137	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	702799	139077137	58945293	494	137485											
CLSTN2	64084	broad.mit.edu	37	chr3	140281582	140281582	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcttgtaccacaagcccTggcttgtctcctctcttctc	7	15	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140281582	C	C	140281582	1	2	168	0	1	0	0	0	0	0	0	0	3594	1595	55	5		5	CLSTN2	3	140281582	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1204445	140281582	57740848	495	137486											
TRIM42	287015	broad.mit.edu	37	chr3	140401979	140401979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccgcctcactcttcagCgccatcgccaagttcaaagc	9	16	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140401979	A	A	140401979	3	1	168	1	0	0	0	0	1	0	0	0	16641	767	27	3	1023	3	TRIM42	3	140401979	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	120397	140401979	57620451	496	137487											
SR140	23350	broad.mit.edu	37	chr3	142757789	142757789	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcatgaagaatcagaagaaGaagaaaatcaaaagtaagaa	9	3	2	7			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142757789	C	C	142757789	3	2	168	1	0	0	0	0	1	0	0	0	15249	943	33	4	2461	4	SR140	3	142757789	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2355810	142757789	55264641	497	137488											
CPA3	1359	broad.mit.edu	37	chr3	148601396	148601396	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatccacctatgtcttctGcagccattcctaacaccaat	3	16	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148601396	C	C	148601396	1	2	168	0	1	0	0	0	0	0	0	0	3823	1334	46	4		4	CPA3	3	148601396	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	5843607	148601396	49421034	498	137489											
MED12L	116931	broad.mit.edu	37	chr3	151073658	151073658	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatttagaatattggtcttaCaatatttttgtttttatttg	5	2	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151073658	G	G	151073658	1	3	168	0	1	0	0	0	0	0	0	0	9522	493	17	4		4	MED12L	3	151073658	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2472262	151073658	46948772	499	137490											
RAP2B	5912	broad.mit.edu	37	chr3	152880648	152880648	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgtcggtgctggagatcCtggatacggcgggcaccgag	17	12	0	1	rs34414975		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152880648	T	T	152880648	2	4	168	1	0	0	0	0	0	0	0	1	13149	680	24	4		4	RAP2B	3	152880648	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1806990	152880648	45141782	500	137491											
OTOL1	131149	broad.mit.edu	37	chr3	161220164	161220164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgggagcacaaggtagagCatgaaatgtatctactgtgt	12	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161220164	A	A	161220164	1	1	168	0	1	0	0	0	0	0	0	0	11398	725	25	3		3	OTOL1	3	161220164	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	8339516	161220164	36802266	501	137492											
SI	6476	broad.mit.edu	37	chr3	164705047	164705047	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatataattttacccatgTttgtagaatagcatatgtct	5	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164705047	C	C	164705047	1	2	168	0	1	0	0	0	0	0	0	0	14410	1740	60	5		5	SI	3	164705047	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	3484883	164705047	33317383	502	137493											
SI	6476	broad.mit.edu	37	chr3	164748573	164748573	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catctggataacaattaaatCtttcattttctgagaaaatt	4	6	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164748573	A	A	164748573	3	1	168	1	0	0	0	0	1	0	0	0	14410	913	32	3	2760	3	SI	3	164748573	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	43526	164748573	33273857	503	137494											
SI	6476	broad.mit.edu	37	chr3	164750353	164750353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattggaatgagcgttcattGgttgattattttccgccact	9	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164750353	T	T	164750353	3	4	168	1	0	0	0	0	1	0	0	0	14410	1348	47	2	2890	2	SI	3	164750353	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1780	164750353	33272077	504	137495											
SI	6476	broad.mit.edu	37	chr3	164777717	164777717	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgccagcttcccggtttctCcttaccacttctttcactac	4	16	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164777717	G	G	164777717	3	3	168	1	0	0	0	0	1	0	0	0	14410	854	30	4	4520	4	SI	3	164777717	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	27364	164777717	33244713	505	137496											
SLITRK3	22865	broad.mit.edu	37	chr3	164905952	164905952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagggggcaggctgtggCctctctcgatctagtagcat	15	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164905952	A	A	164905952	3	1	168	1	0	0	0	0	1	0	0	0	14858	738	26	3	270	3	SLITRK3	3	164905952	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	128235	164905952	33116478	506	137497											
BCHE	590	broad.mit.edu	37	chr3	165548502	165548502	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtttgggttccacatctctGatccatggaagcctggaaaa	10	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165548502	T	T	165548502	4	4	168	1	0	0	0	0	0	1	0	0	1363	1294	45	3	1500	3	BCHE	3	165548502	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	642550	165548502	32473928	507	137498											
SERPINI2	5276	broad.mit.edu	37	chr3	167183059	167183059	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattttaggatttgttgagcAgtaattagtttttccacttc	7	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167183059	T	T	167183059	2	4	168	1	0	0	0	0	0	0	0	1	14232	175	7	5		5	SERPINI2	3	167183059	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	1634557	167183059	30839371	508	137499											
WDR49	151790	broad.mit.edu	37	chr3	167245694	167245694	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagataatcagtaactgacCacctggctcacacatctcta	7	12	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167245694	A	A	167245694	3	1	168	1	0	0	0	0	1	0	0	0	17429	594	21	2	651	2	WDR49	3	167245694	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	62635	167245694	30776736	509	137500											
WDR49	151790	broad.mit.edu	37	chr3	167254714	167254714	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagatgtcatcatggtgcTgtatacctcctttccattct	6	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167254714	A	A	167254714	3	1	168	1	0	0	0	0	1	0	0	0	17429	1580	55	5	1287	5	WDR49	3	167254714	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	9020	167254714	30767716	510	137501											
PDCD10	11235	broad.mit.edu	37	chr3	167414840	167414840	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaagaagggactccgtgaaGttaacttccacgcttttttt	9	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167414840	C	C	167414840	3	2	168	1	0	0	0	0	1	0	0	0	11710	1020	36	4	433	4	PDCD10	3	167414840	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	160126	167414840	30607590	511	137502											
PRKCI	5584	broad.mit.edu	37	chr3	169952990	169952990	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattatttttaatcattttCaaactgaaaactccttttct	1	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169952990	G	G	169952990	1	3	168	0	1	0	0	0	0	0	0	0	12620	841	29	4		4	PRKCI	3	169952990	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2538150	169952990	28069440	512	137503											
FNDC3B	64778	broad.mit.edu	37	chr3	172025273	172025273	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacataggagcaaaagttcActaaccctgcagtggaaggt	11	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172025273	T	T	172025273	2	4	168	1	0	0	0	0	0	0	0	1	6028	146	6	5		5	FNDC3B	3	172025273	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	2072283	172025273	25997157	513	137504											
NLGN1	22871	broad.mit.edu	37	chr3	173525373	173525373	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttaagaactatattgaaAttatgccctcttttcactaa	4	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173525373	T	T	173525373	1	4	168	0	1	0	0	0	0	0	0	0	10556	116	4	5		5	NLGN1	3	173525373	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1500100	173525373	24497057	514	137505											
NLGN1	22871	broad.mit.edu	37	chr3	173525445	173525445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatttttgaggataagaaCgattgccaaccatttgtttt	8	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173525445	A	A	173525445	1	1	168	0	1	0	0	0	0	0	0	0	10556	551	19	3		3	NLGN1	3	173525445	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	72	173525445	24496985	515	137506											
PIK3CA	5290	broad.mit.edu	37	chr3	178921542	178921542	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaataaaaattctttgtgcaAcctacgtgaatgtaaatatt	6	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178921542	T	T	178921542	3	4	168	1	0	0	0	0	1	0	0	0	12008	43	2	5	1038	5	PIK3CA	3	178921542	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	5396097	178921542	19100888	516	137507											
USP13	8975	broad.mit.edu	37	chr3	179448420	179448421	+	Missense_Mutation	DNP	GG	TT	TT													ccaggactaagttaggacatGgccttctctcaggccagtat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	179448421	TT	TT	179448420	3	4	168	1	0	0	0	0	1	0	0	0	17170	1348	47	2	1215	2	USP13	3	179448420	Missense_Mutation	DNP	GG	TCGA-50-6590-01A-12D-1855-08	526878	179448420	18574010	517	137508											
ABCC5	10057	broad.mit.edu	37	chr3	183700635	183700635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggttaggatggcccccCgcaagcggacaccggttcgg	14	14	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183700635	A	A	183700635	3	1	168	1	0	0	0	0	1	0	0	0	56	652	23	1	3661	1	ABCC5	3	183700635	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4252215	183700635	14321795	518	137509											
DVL3	1857	broad.mit.edu	37	chr3	183888122	183888122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggcagtcggagcagtgGctccaaccgtagcggcagcg	15	12	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183888122	T	T	183888122	3	4	168	1	0	0	0	0	1	0	0	0	4877	1203	42	3	1788	3	DVL3	3	183888122	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	187487	183888122	14134308	519	137510											
ALG3	10195	broad.mit.edu	37	chr3	183960451	183960451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagagctcgatgagccCcagcaccaacaacctggaga	11	14	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183960451	A	A	183960451	3	1	168	1	0	0	0	0	1	0	0	0	520	623	22	2	152	2	ALG3	3	183960451	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	72329	183960451	14061979	520	137511											
EIF4G1	1981	broad.mit.edu	37	chr3	184049680	184049680	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtcagccttggcctcccAgttctgaaccggggtaaggg	15	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184049680	T	T	184049680	1	4	168	0	1	0	0	0	0	0	0	0	5078	203	7	5		5	EIF4G1	3	184049680	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	89229	184049680	13972750	521	137512											
VPS8	23355	broad.mit.edu	37	chr3	184586832	184586832	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcagtagtgggtgagtaGgcagaattccagtgtagtag	15	4	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184586832	A	A	184586832	1	1	168	0	1	0	0	0	0	0	0	0	17345	1015	35	4		4	VPS8	3	184586832	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	537152	184586832	13435598	522	137513											
IGF2BP2	10644	broad.mit.edu	37	chr3	185541031	185541031	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaattaaagcactcagaaCcttgcttagatcaagcccgc	7	11	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185541031	G	G	185541031	1	3	168	0	1	0	0	0	0	0	0	0	7644	522	18	4		4	IGF2BP2	3	185541031	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	954199	185541031	12481399	523	137514											
FETUB	26998	broad.mit.edu	37	chr3	186370413	186370413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagccctcttgtccttcCgccatgagaatcacacagag	8	15	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186370413	A	A	186370413	3	1	168	1	0	0	0	0	1	0	0	0	5878	652	23	1	1168	1	FETUB	3	186370413	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	829382	186370413	11652017	524	137515											
HRG	3273	broad.mit.edu	37	chr3	186394866	186394866	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatcaatggtgtaccgcctCatttgggacatcccttccac	7	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186394866	T	T	186394866	3	4	168	1	0	0	0	0	1	0	0	0	7421	826	29	4	798	4	HRG	3	186394866	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	24453	186394866	11627564	525	137516											
RTP2	344892	broad.mit.edu	37	chr3	187419769	187419769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctgcctgaggcgtgctGctccaggtactgcttccagc	11	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187419769	T	T	187419769	3	4	168	1	0	0	0	0	1	0	0	0	13845	1328	46	3	537	3	RTP2	3	187419769	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1024903	187419769	10602661	526	137517											
LPP	4026	broad.mit.edu	37	chr3	188583987	188583987	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtttctgtttccttccccaGaatactctggagcagtgcaa	9	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	188583987	C	C	188583987	5	2	168	1	0	0	0	0	0	0	1	0	9010	956	33	4	1436	4	LPP	3	188583987	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	1164218	188583987	9438443	527	137518											
FGF12	2257	broad.mit.edu	37	chr3	192053165	192053165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactgaactgtagagataGccttcaccattcatggccac	7	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192053165	T	T	192053165	2	4	168	1	0	0	0	0	0	0	0	1	5898	958	34	3		3	FGF12	3	192053165	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	3469178	192053165	5969265	528	137519											
FGF12	2257	broad.mit.edu	37	chr3	192078262	192078262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcaatggtaccatctgGgtgcatctgcaggaagtatc	10	11	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192078262	T	T	192078262	3	4	168	1	0	0	0	0	1	0	0	0	5898	1232	43	2	482	2	FGF12	3	192078262	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	25097	192078262	5944168	529	137520											
ATP13A5	344905	broad.mit.edu	37	chr3	193032638	193032638	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtaagggactacagggTaacaaattcgacaacagaac	10	7	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193032638	A	A	193032638	1	1	168	0	1	0	0	0	0	0	0	0	1131	1653	57	5		5	ATP13A5	3	193032638	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	954376	193032638	4989792	530	137521											
MUC4	4585	broad.mit.edu	37	chr3	195475697	195475697	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcgagccatcctaattccTggaccccttgcagtgtcttg	8	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195475697	A	A	195475697	1	1	168	0	1	0	0	0	0	0	0	0	10072	1595	55	5		5	MUC4	3	195475697	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	2443059	195475697	2546733	531	137522											
PCGF3	10336	broad.mit.edu	37	chr4	728712	728712	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctaacacacctgtgctttGatgacagtctgcaggagctg	10	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	728712	A	A	728712	1	1	168	0	1	0	0	0	0	0	0	0	11670	1305	45	4		4	PCGF3	4	728712	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08		728712	190425564	532	137523											
GAK	2580	broad.mit.edu	37	chr4	860764	860764	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcggcagggggccctcctCttggggtgctctgcacgctc	15	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	860764	G	G	860764	3	3	168	1	0	0	0	0	1	0	0	0	6257	913	32	4	1115	4	GAK	4	860764	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	132052	860764	190293512	533	137524											
AFAP1	60312	broad.mit.edu	37	chr4	7811568	7811568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaacatacatcaaaaccCatttcttctttcccttggca	2	12	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7811568	A	A	7811568	1	1	168	0	1	0	0	0	0	0	0	0	353	609	21	2		2	AFAP1	4	7811568	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	6950804	7811568	183342708	534	137525											
CPZ	8532	broad.mit.edu	37	chr4	8602816	8602816	+	Intron	DEL	A	-	-													gtgacggtcagggccactgcAggagggactgacctgccgac					rs4594711	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8602816	-	-	8602816	6	5	168	0	1	1	0	1	0	0	0	0	3871	203	7	0		0	CPZ	4	8602816	Intron	DEL	A	TCGA-50-6590-01A-12D-1855-08	791248	8602816	182551460	535	137526											
RAB28	9364	broad.mit.edu	37	chr4	13370332	13370332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacatttagaaagagctcCttaaagtatatttttatttt	5	4	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13370332	A	A	13370332	1	1	168	0	1	0	0	0	0	0	0	0	13024	696	24	2		2	RAB28	4	13370332	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4767516	13370332	177783944	536	137527											
LDB2	9079	broad.mit.edu	37	chr4	16513703	16513703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtctcgacatcagttcctGcattggctccaatattacac	6	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16513703	T	T	16513703	3	4	168	1	0	0	0	0	1	0	0	0	8768	1328	46	3	602	3	LDB2	4	16513703	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3143371	16513703	174640573	537	137528											
SLIT2	9353	broad.mit.edu	37	chr4	20619206	20619206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagcatgggaagtgcagGctttcaggtctggggcagcc	16	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20619206	T	T	20619206	3	4	168	1	0	0	0	0	1	0	0	0	14854	1194	42	3	4423	3	SLIT2	4	20619206	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4105503	20619206	170535070	538	137529											
PPARGC1A	10891	broad.mit.edu	37	chr4	23815726	23815727	+	Missense_Mutation	DNP	GG	AT	AT													ccgaagtgcttgttcagctcGgctcggatttcctggtcttg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	23815727	AT	AT	23815726	3	1	168	1	0	0	0	0	1	0	0	0	12396	1103	39	4	1040	4	PPARGC1A	4	23815726	Missense_Mutation	DNP	GG	TCGA-50-6590-01A-12D-1855-08	3196520	23815726	167338550	539	137530											
PDS5A	23244	broad.mit.edu	37	chr4	39875953	39875953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttatttgtgaatatggCgtgtatacagtgcacagcct	9	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39875953	A	A	39875953	3	1	168	1	0	0	0	0	1	0	0	0	11785	768	27	3	1836	3	PDS5A	4	39875953	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	16060227	39875953	151278323	540	137531											
RBM47	54502	broad.mit.edu	37	chr4	40439911	40439911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgcctcagccgcgccgcCgcccctggctgccttctggt	12	20	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40439911	A	A	40439911	3	1	168	1	0	0	0	0	1	0	0	0	13249	652	23	1	797	1	RBM47	4	40439911	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	563958	40439911	150714365	541	137532											
APBB2	323	broad.mit.edu	37	chr4	40936666	40936666	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatagcgtagggttgctccTtcaaactcttttaaactggg	10	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40936666	A	A	40936666	3	1	168	1	0	0	0	0	1	0	0	0	763	1606	56	5	1161	5	APBB2	4	40936666	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	496755	40936666	150217610	542	137533											
KCTD8	386617	broad.mit.edu	37	chr4	44176975	44176975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttgtttcccgggacttGctgatgagggtctgaaagag	14	6	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44176975	T	T	44176975	3	4	168	1	0	0	0	0	1	0	0	0	8185	1310	46	3	171	3	KCTD8	4	44176975	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3240309	44176975	146977301	543	137534											
GABRG1	2565	broad.mit.edu	37	chr4	46099399	46099399	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaaaaatggatggtagAaggttcaatcaaatcatgta	9	3	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46099399	G	G	46099399	1	3	168	0	1	0	0	0	0	0	0	0	6231	261	9	5		5	GABRG1	4	46099399	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1922424	46099399	145054877	544	137535											
SLC10A4	201780	broad.mit.edu	37	chr4	48490381	48490381	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatgggtgttttcttccgtGagcttaggattctctcgcct	11	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48490381	A	A	48490381	1	1	168	0	1	0	0	0	0	0	0	0	14489	1305	45	4		4	SLC10A4	4	48490381	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2390982	48490381	142663895	545	137536											
CWH43	80157	broad.mit.edu	37	chr4	49040160	49040160	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacttcagcacctggctccaGagattatctacagctcactg	7	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49040160	T	T	49040160	3	4	168	1	0	0	0	0	1	0	0	0	4106	942	33	3	1816	3	CWH43	4	49040160	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	549779	49040160	142114116	546	137537											
LRRC66	339977	broad.mit.edu	37	chr4	52861702	52861702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatttccacttcctgcccCggtgttgtccccgcactgtc	7	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52861702	A	A	52861702	3	1	168	1	0	0	0	0	1	0	0	0	9105	652	23	1	1160	1	LRRC66	4	52861702	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3821542	52861702	138292574	547	137538											
SGCB	6443	broad.mit.edu	37	chr4	52895759	52895759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagggaaaatatctctttcCaataatcaactaggtttttg	6	6	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52895759	A	A	52895759	1	1	168	0	1	0	0	0	0	0	0	0	14313	609	21	2		2	SGCB	4	52895759	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	34057	52895759	138258517	548	137539											
PDGFRA	5156	broad.mit.edu	37	chr4	55125098	55125098	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagtccaaaagagtgaaaaGaaatagaaaactataggacg	9	5	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55125098	C	C	55125098	1	2	168	0	1	0	0	0	0	0	0	0	11755	957	33	4		4	PDGFRA	4	55125098	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2229339	55125098	136029178	549	137540											
KDR	3791	broad.mit.edu	37	chr4	55971000	55971000	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcttgcaaacaggtgtGggcaactctcccacatggat	10	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55971000	T	T	55971000	2	4	168	1	0	0	0	0	0	0	0	1	8209	1335	47	2		2	KDR	4	55971000	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	845902	55971000	135183276	550	137541											
KDR	3791	broad.mit.edu	37	chr4	55976850	55976850	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggggtgggtaaccaagGtacttcgcagggattctgac	15	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55976850	T	T	55976850	4	4	168	1	0	0	0	0	0	1	0	0	8209	1256	44	3	3100	3	KDR	4	55976850	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5850	55976850	135177426	551	137542											
KDR	3791	broad.mit.edu	37	chr4	55980506	55980506	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcacagatttatttttTaaagtaatgcaactttaaaa	4	5	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55980506	C	C	55980506	1	2	168	0	1	0	0	0	0	0	0	0	8209	1769	61	5		5	KDR	4	55980506	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	3656	55980506	135173770	552	137543											
CEP135	9662	broad.mit.edu	37	chr4	56890589	56890589	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattacaaattagctaatAactcttatatttgtttgcca	3	6	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56890589	T	T	56890589	1	4	168	0	1	0	0	0	0	0	0	0	3277	377	13	5		5	CEP135	4	56890589	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	910083	56890589	134263687	553	137544											
KIAA1211	57482	broad.mit.edu	37	chr4	57181085	57181085	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagcggggatttccagGgggccgatcgtcctgggccc	18	11	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57181085	C	C	57181085	3	2	168	1	0	0	0	0	1	0	0	0	8285	1232	43	4	1435	4	KIAA1211	4	57181085	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	290496	57181085	133973191	554	137545											
POLR2B	5431	broad.mit.edu	37	chr4	57873086	57873086	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattaaaacacggatcatatCtgatggcctaaaatactctt	5	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57873086	G	G	57873086	3	3	168	1	0	0	0	0	1	0	0	0	12310	913	32	4	1360	4	POLR2B	4	57873086	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	692001	57873086	133281190	555	137546											
LPHN3	23284	broad.mit.edu	37	chr4	62598884	62598884	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagacctggcagtagatgaGaatgggctatgggtaatcta	13	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62598884	A	A	62598884	2	1	168	1	0	0	0	0	0	0	0	1	9004	933	33	4		4	LPHN3	4	62598884	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	4725798	62598884	128555392	556	137547											
LPHN3	23284	broad.mit.edu	37	chr4	62845602	62845602	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catttcttctagtcatctaaGatagatactaattttcaggc	5	8	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62845602	A	A	62845602	1	1	168	0	1	0	0	0	0	0	0	0	9004	957	33	4		4	LPHN3	4	62845602	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	246718	62845602	128308674	557	137548											
LPHN3	23284	broad.mit.edu	37	chr4	62863922	62863922	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttccttgggattgctttaTataaaatgtttcatcatact	5	7	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62863922	C	C	62863922	3	2	168	1	0	0	0	0	1	0	0	0	9004	1406	49	5	3200	5	LPHN3	4	62863922	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	18320	62863922	128290354	558	137549											
LPHN3	23284	broad.mit.edu	37	chr4	62910216	62910216	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacggttcgaaagcagtcaGagtcttcctttattactgga	9	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62910216	C	C	62910216	3	2	168	1	0	0	0	0	1	0	0	0	9004	943	33	4	3645	4	LPHN3	4	62910216	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	46294	62910216	128244060	559	137550											
LPHN3	23284	broad.mit.edu	37	chr4	62933996	62933996	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtagttattaaaaacaGttcatctcacaatttaaaaa	4	5	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62933996	C	C	62933996	1	2	168	0	1	0	0	0	0	0	0	0	9004	1044	36	4		4	LPHN3	4	62933996	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	23780	62933996	128220280	560	137551											
EPHA5	2044	broad.mit.edu	37	chr4	66213739	66213739	+	Intron	SNP	T	A	A													cagagaacaaagcatttcatTgtcaagttgggaaagagtag							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66213739	A	A	66213739	1	1	168	0	1	0	0	0	0	0	0	0	5212	1827	63	5		5	EPHA5	4	66213739	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	3279743	66213739	124940537	561	137552	593	2									
EPHA5	2044	broad.mit.edu	37	chr4	66213745	66213745	+	Intron	SNP	G	C	C													acaaagcatttcattgtcaaGttgggaaagagtagttccat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66213745	C	C	66213745	1	2	168	0	1	0	0	0	0	0	0	0	5212	1044	36	4		4	EPHA5	4	66213745	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6	66213745	124940531	562	137553	593	2									
TMPRSS11F	389208	broad.mit.edu	37	chr4	68995518	68995518	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacctttactgagaaaagctGaatacttacgcgtacatcat	6	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68995518	T	T	68995518	1	4	168	0	1	0	0	0	0	0	0	0	16366	1305	45	3		3	TMPRSS11F	4	68995518	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2781773	68995518	122158758	563	137554											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69111239	69111239	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacttgctacattttgccaActtgctctccccagtgaagt	6	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69111239	T	T	69111239	1	4	168	0	1	0	0	0	0	0	0	0	16363	58	2	5		5	TMPRSS11B	4	69111239	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	115721	69111239	122043037	564	137555											
UGT2B28	54490	broad.mit.edu	37	chr4	70152664	70152664	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgttaaagtttgagatcTacacagaaagaatattaagg	10	4	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70152664	A	A	70152664	1	1	168	0	1	0	0	0	0	0	0	0	17086	1537	53	5		5	UGT2B28	4	70152664	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1041425	70152664	121001612	565	137556											
SULT1B1	27284	broad.mit.edu	37	chr4	70596417	70596417	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attctattagtgggtaaaacCcaagacaataaacaagtaac	6	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70596417	G	G	70596417	1	3	168	0	1	0	0	0	0	0	0	0	15494	638	22	4		4	SULT1B1	4	70596417	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	443753	70596417	120557859	566	137557											
CSN1S1	1446	broad.mit.edu	37	chr4	70802107	70802107	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgatgtgaagtacagtttctCatagatttccactcatgtat	7	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70802107	A	A	70802107	1	1	168	0	1	0	0	0	0	0	0	0	3981	841	29	3		3	CSN1S1	4	70802107	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	205690	70802107	120352169	567	137558											
ODAM	54959	broad.mit.edu	37	chr4	71063865	71063865	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctcagacacaaccaggCcccagtcacgtaagtcaggc	9	17	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71063865	T	T	71063865	2	4	168	1	0	0	0	0	0	0	0	1	10919	726	26	4		4	ODAM	4	71063865	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	261758	71063865	120090411	568	137559											
CSN3	1448	broad.mit.edu	37	chr4	71110627	71110627	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaccagattgtactgacttTaagaaaattttgtttaaggg	8	4	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71110627	C	C	71110627	1	2	168	0	1	0	0	0	0	0	0	0	3983	1769	61	5		5	CSN3	4	71110627	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	46762	71110627	120043649	569	137560											
C4orf35	85438	broad.mit.edu	37	chr4	71202002	71202002	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctagccagctagccttaaCatctaagaaatttttccaac	5	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71202002	A	A	71202002	1	1	168	0	1	0	0	0	0	0	0	0	2288	493	17	3		3	C4orf35	4	71202002	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	91375	71202002	119952274	570	137561											
IGJ	3512	broad.mit.edu	37	chr4	71527723	71527723	+	Intron	DEL	G	-	-													agcaaaaaggggagtaaagaGgcaggtgttacattcaaaca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71527723	-	-	71527723	6	5	168	0	1	1	0	1	0	0	0	0	7662	1015	35	0		0	IGJ	4	71527723	Intron	DEL	G	TCGA-50-6590-01A-12D-1855-08	325721	71527723	119626553	571	137562											
SLC4A4	8671	broad.mit.edu	37	chr4	72338327	72338328	+	Intron	DNP	TC	GT	GT													aaggtgatcttgtatttttgTcaatctttctgtagacattt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	72338328	GT	GT	72338327	1	3	168	0	1	0	0	0	0	0	0	0	14770	1682	58	5		5	SLC4A4	4	72338327	Intron	DNP	TC	TCGA-50-6590-01A-12D-1855-08	810604	72338327	118815949	572	137563											
SLC4A4	8671	broad.mit.edu	37	chr4	72338393	72338393	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaggaggaggaatctaaAcatttttctttcttttttcc	6	8	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72338393	G	G	72338393	1	3	168	0	1	0	0	0	0	0	0	0	14770	58	2	5		5	SLC4A4	4	72338393	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	66	72338393	118815883	573	137564											
GC	2638	broad.mit.edu	37	chr4	72618364	72618364	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgcttttagtcgctctgcCagtctgaaaaaccatttaaa	6	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72618364	G	G	72618364	2	3	168	1	0	0	0	0	0	0	0	1	6344	581	21	4		4	GC	4	72618364	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	279971	72618364	118535912	574	137565											
ANKRD17	26057	broad.mit.edu	37	chr4	73956491	73956491	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaatatgaggattttcctGatagcatagattctggtgtt	10	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73956491	A	A	73956491	3	1	168	1	0	0	0	0	1	0	0	0	646	1294	45	4	981	4	ANKRD17	4	73956491	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1338127	73956491	117197785	575	137566											
EREG	2069	broad.mit.edu	37	chr4	75246683	75246683	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatgaaagagtgagaaattCttccatgaaggctgcagaat	10	5	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75246683	G	G	75246683	1	3	168	0	1	0	0	0	0	0	0	0	5262	928	32	4		4	EREG	4	75246683	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1290192	75246683	115907593	576	137567											
USO1	8615	broad.mit.edu	37	chr4	76731607	76731607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaatcagttgaggtacaagGagagaccgagactataatag	11	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76731607	T	T	76731607	3	4	168	1	0	0	0	0	1	0	0	0	17165	1174	41	3	2425	3	USO1	4	76731607	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1484924	76731607	114422669	577	137568											
CXCL9	4283	broad.mit.edu	37	chr4	76924763	76924763	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggtctcttatgtagtcttCttttgacgagaacgttgaga	11	6	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76924763	G	G	76924763	3	3	168	1	0	0	0	0	1	0	0	0	4122	912	32	4	15	4	CXCL9	4	76924763	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	193156	76924763	114229513	578	137569											
ART3	419	broad.mit.edu	37	chr4	77021379	77021379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaataattttgctgtagCaatagtaactgccagttctt	7	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77021379	A	A	77021379	1	1	168	0	1	0	0	0	0	0	0	0	1002	725	25	3		3	ART3	4	77021379	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	96616	77021379	114132897	579	137570											
SHROOM3	57619	broad.mit.edu	37	chr4	77692084	77692084	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgatgcagttcaacaagttCtccctcaaagcccacataca	6	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77692084	T	T	77692084	1	4	168	0	1	0	0	0	0	0	0	0	14408	928	32	4		4	SHROOM3	4	77692084	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	670705	77692084	113462192	580	137571											
SEPT11	55752	broad.mit.edu	37	chr4	77917577	77917577	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttctcccctgaaattgcaGaatgaagagcttcgaaactt	7	10	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77917577	A	A	77917577	5	1	168	1	0	0	0	0	0	0	1	0	14174	956	33	4	33	4	SEPT11	4	77917577	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	225493	77917577	113236699	581	137572											
FRAS1	80144	broad.mit.edu	37	chr4	79199931	79199931	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttataaccgaagatgatttCaaattaattcaaaattaatc	3	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79199931	G	G	79199931	1	3	168	0	1	0	0	0	0	0	0	0	6102	841	29	4		4	FRAS1	4	79199931	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1282354	79199931	111954345	582	137573											
FRAS1	80144	broad.mit.edu	37	chr4	79297024	79297024	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtccacacctctaatgaaAcatgttctggtaagtgcttc	7	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79297024	G	G	79297024	3	3	168	1	0	0	0	0	1	0	0	0	6102	43	2	5	3385	5	FRAS1	4	79297024	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	97093	79297024	111857252	583	137574											
ANTXR2	118429	broad.mit.edu	37	chr4	80828641	80828641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaagaaagaaataaatcCatattgaaatattgaagcca	6	6	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80828641	A	A	80828641	1	1	168	0	1	0	0	0	0	0	0	0	712	609	21	2		2	ANTXR2	4	80828641	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1531617	80828641	110325635	584	137575											
ANTXR2	118429	broad.mit.edu	37	chr4	80992766	80992766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctccgcaagttgctgtacGaaattataaatttcaatcca	5	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80992766	T	T	80992766	3	4	168	1	0	0	0	0	1	0	0	0	712	1049	37	3	1377	3	ANTXR2	4	80992766	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	164125	80992766	110161510	585	137576											
ANTXR2	118429	broad.mit.edu	37	chr4	80992829	80992829	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaaagatgaaattgaactGatcagagaaacaaaacacgg	9	6	1	6			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80992829	T	T	80992829	1	4	168	0	1	0	0	0	0	0	0	0	712	1305	45	3		3	ANTXR2	4	80992829	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	63	80992829	110161447	586	137577											
SCD5	79966	broad.mit.edu	37	chr4	83719607	83719607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccgggccgccgccgccCtcagagctttcgagcccggc	12	20	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83719607	A	A	83719607	3	1	168	1	0	0	0	0	1	0	0	0	13999	680	24	2	1134	2	SCD5	4	83719607	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2726778	83719607	107434669	587	137578											
PTPN13	5783	broad.mit.edu	37	chr4	87680174	87680174	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgaaattttgcaaaatgcAcctgaagatgtgacacttgt	8	6	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87680174	G	G	87680174	2	3	168	1	0	0	0	0	0	0	0	1	12888	146	6	5		5	PTPN13	4	87680174	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	3960567	87680174	103474102	588	137579											
SPARCL1	8404	broad.mit.edu	37	chr4	88411271	88411271	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctcctacggttaaggcctGagagttcttattttttaagt	8	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88411271	C	C	88411271	1	2	168	0	1	0	0	0	0	0	0	0	15112	1305	45	4		4	SPARCL1	4	88411271	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	731097	88411271	102743005	589	137580											
SNCA	6622	broad.mit.edu	37	chr4	90647673	90647673	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagacttcgagatacactGtaaaaactttgagaaatgtc	9	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90647673	C	C	90647673	1	2	168	0	1	0	0	0	0	0	0	0	14954	1392	48	4		4	SNCA	4	90647673	3'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	2236402	90647673	100506603	590	137581											
MMRN1	22915	broad.mit.edu	37	chr4	90856447	90856447	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccagctgctgagtcagttaGcaataatgtcactgagtaca	9	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90856447	C	C	90856447	3	2	168	1	0	0	0	0	1	0	0	0	9764	971	34	4	1638	4	MMRN1	4	90856447	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	208774	90856447	100297829	591	137582											
MMRN1	22915	broad.mit.edu	37	chr4	90857244	90857244	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttttgcaagtcgccaagAcccttgcaggtattcccaga	9	11	0	2	rs3756065	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90857244	C	C	90857244	3	2	168	1	0	0	0	0	1	0	0	0	9764	275	10	5	2435	5	MMRN1	4	90857244	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	797	90857244	100297032	592	137583											
COL25A1	84570	broad.mit.edu	37	chr4	109783708	109783708	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccttgtttcccctattaCagcagaataagaggatgaaa	7	9	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109783708	G	G	109783708	1	3	168	0	1	0	0	0	0	0	0	0	3716	493	17	4		4	COL25A1	4	109783708	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	18926464	109783708	81370568	593	137584											
PRSS12	8492	broad.mit.edu	37	chr4	119229564	119229564	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatatgctcatcagtaacCatcccaaataattaggtttt	5	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119229564	A	A	119229564	1	1	168	0	1	0	0	0	0	0	0	0	12721	609	21	2		2	PRSS12	4	119229564	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	9445856	119229564	71924712	594	137585											
PRSS12	8492	broad.mit.edu	37	chr4	119237555	119237555	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaacatttgtatttcacaaGaaatatcaccatattcaggc	4	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119237555	C	C	119237555	1	2	168	0	1	0	0	0	0	0	0	0	12721	957	33	4		4	PRSS12	4	119237555	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	7991	119237555	71916721	595	137586											
SYNPO2	171024	broad.mit.edu	37	chr4	119952487	119952487	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccacaccaacagtcaatGctgttcagcctggtgcagtg	9	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119952487	T	T	119952487	3	4	168	1	0	0	0	0	1	0	0	0	15576	1319	46	3	2571	3	SYNPO2	4	119952487	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	714932	119952487	71201789	596	137587											
FAT4	79633	broad.mit.edu	37	chr4	126402805	126402805	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgttggagccttttggtgTgaacagtctggaagtaaaat	12	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126402805	A	A	126402805	3	1	168	1	0	0	0	0	1	0	0	0	5749	1696	59	5	12786	5	FAT4	4	126402805	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	6450318	126402805	64751471	597	137588											
PCDH10	57575	broad.mit.edu	37	chr4	134073887	134073887	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accggttacaccgaccagcaGcctgatatcatctccaacgg	8	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134073887	C	C	134073887	3	2	168	1	0	0	0	0	1	0	0	0	11601	962	34	4	2594	4	PCDH10	4	134073887	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	7671082	134073887	57080389	598	137589											
RNF150	57484	broad.mit.edu	37	chr4	141789444	141789444	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttcttcacagtcctggtCagtggaaagttctacatcag	8	11	5	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141789444	A	A	141789444	3	1	168	1	0	0	0	0	1	0	0	0	13562	826	29	3	32	3	RNF150	4	141789444	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	7715557	141789444	49364832	599	137590											
INPP4B	8821	broad.mit.edu	37	chr4	143094812	143094812	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaagcatctttaaagaattCttcaagctgtctggagaatg	9	6	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143094812	G	G	143094812	3	3	168	1	0	0	0	0	1	0	0	0	7823	912	32	4	1486	4	INPP4B	4	143094812	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1305368	143094812	48059464	600	137591											
SLC10A7	84068	broad.mit.edu	37	chr4	147215233	147215233	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaagccaatccttgatGtatcttcggacaatctgaaa	6	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147215233	A	A	147215233	2	1	168	1	0	0	0	0	0	0	0	1	14492	1372	48	4		4	SLC10A7	4	147215233	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	4120421	147215233	43939043	601	137592											
TTC29	83894	broad.mit.edu	37	chr4	147824673	147824673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaaaacatacccaaggCatcctggcaaatgcccactc	5	17	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147824673	A	A	147824673	1	1	168	0	1	0	0	0	0	0	0	0	16822	725	25	3		3	TTC29	4	147824673	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	609440	147824673	43329603	602	137593											
EDNRA	1909	broad.mit.edu	37	chr4	148457192	148457192	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttaagcaggtaaatcccaTaacatcatgaaaatctggcc	6	10	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148457192	C	C	148457192	1	2	168	0	1	0	0	0	0	0	0	0	4959	1421	49	5		5	EDNRA	4	148457192	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	632519	148457192	42697084	603	137594											
PRSS48	345062	broad.mit.edu	37	chr4	152204272	152204272	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgtcttcctccacagataGagattaccattctgcccttc	5	15	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152204272	C	C	152204272	3	2	168	1	0	0	0	0	1	0	0	0	12736	942	33	4	499	4	PRSS48	4	152204272	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3747080	152204272	38950004	604	137595											
TDO2	6999	broad.mit.edu	37	chr4	156830000	156830000	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attttgtattttctagaggtCagcattgctaactcagtgtt	8	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156830000	T	T	156830000	1	4	168	0	1	0	0	0	0	0	0	0	15849	841	29	4		4	TDO2	4	156830000	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4625728	156830000	34324276	605	137596											
TDO2	6999	broad.mit.edu	37	chr4	156838702	156838702	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatcttggtcttctgtgtgCcctcctgcccactttctctc	6	15	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156838702	G	G	156838702	1	3	168	0	1	0	0	0	0	0	0	0	15849	754	26	4		4	TDO2	4	156838702	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	8702	156838702	34315574	606	137597											
PDGFC	56034	broad.mit.edu	37	chr4	157731921	157731921	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctgattctcatgtgtaaGaggagaaaaataaaaagaaa	8	3	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157731921	A	A	157731921	1	1	168	0	1	0	0	0	0	0	0	0	11753	957	33	4		4	PDGFC	4	157731921	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	893219	157731921	33422355	607	137598											
NPY1R	4886	broad.mit.edu	37	chr4	164246587	164246587	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataatcatcatcccgagaCcggaaatcacaaaagttgaa	6	10	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164246587	A	A	164246587	2	1	168	1	0	0	0	0	0	0	0	1	10703	494	18	3		3	NPY1R	4	164246587	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	6514666	164246587	26907689	608	137599											
MARCH1	55016	broad.mit.edu	37	chr4	165111490	165111490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaagatgagttgtagaCacagatctgctactgctgta	10	6	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165111490	A	A	165111490	1	1	168	0	1	0	0	0	0	0	0	0	9390	493	17	3		3	MARCH1	4	165111490	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	864903	165111490	26042786	609	137600											
TLL1	7092	broad.mit.edu	37	chr4	166795203	166795203	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataaaacagagactatagaTtacaaggacccgtgtaaagc	9	7	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166795203	C	C	166795203	2	2	168	1	0	0	0	0	0	0	0	1	16068	1490	52	5		5	TLL1	4	166795203	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	1683713	166795203	24359073	610	137601											
TLL1	7092	broad.mit.edu	37	chr4	166916357	166916357	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaactaggtagggactgacTtaaggaaaaaaaaaattaaa	9	3	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166916357	A	A	166916357	1	1	168	0	1	0	0	0	0	0	0	0	16068	1624	56	5		5	TLL1	4	166916357	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	121154	166916357	24237919	611	137602											
TLL1	7092	broad.mit.edu	37	chr4	166946698	166946698	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgagttttcaaatggactAaaaagttcagaaaattcata	6	4	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166946698	G	G	166946698	1	3	168	0	1	0	0	0	0	0	0	0	16068	377	13	5		5	TLL1	4	166946698	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	30341	166946698	24207578	612	137603											
DDX60L	91351	broad.mit.edu	37	chr4	169362572	169362572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacgttaaattctttaaCcaggtgtgacacaacattcc	5	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169362572	A	A	169362572	3	1	168	1	0	0	0	0	1	0	0	0	4412	507	18	3	4026	3	DDX60L	4	169362572	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2415874	169362572	21791704	613	137604											
VEGFC	7424	broad.mit.edu	37	chr4	177608644	177608644	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catccagctccttgtttggtCcacagatgtcatggaatcca	8	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177608644	T	T	177608644	3	4	168	1	0	0	0	0	1	0	0	0	17279	855	30	4	428	4	VEGFC	4	177608644	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	8246072	177608644	13545632	614	137605											
HELT	391723	broad.mit.edu	37	chr4	185940984	185940984	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactccgctgattttccccgGggaagggaaaaaggtgggca	14	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185940984	T	T	185940984	2	4	168	1	0	0	0	0	0	0	0	1	7115	1219	43	2		2	HELT	4	185940984	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	8332340	185940984	5213292	615	137606											
TRIML2	205860	broad.mit.edu	37	chr4	189026098	189026098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataacttctatagagaaaGcacagaattccaggtgagat	9	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189026098	T	T	189026098	1	4	168	0	1	0	0	0	0	0	0	0	16676	986	34	3		3	TRIML2	4	189026098	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3085114	189026098	2128178	616	137607											
SLC6A19	340024	broad.mit.edu	37	chr5	1208874	1208874	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attgcaggagccttcatgatCccgttcctcatcctgctggt	9	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1208874	T	T	1208874	2	4	168	1	0	0	0	0	0	0	0	1	14796	845	30	4		4	SLC6A19	5	1208874	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08		1208874	179706386	617	137608											
SLC6A18	348932	broad.mit.edu	37	chr5	1232286	1232286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcccacgccacagtccCccccagcccccgaccctggg	9	24	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1232286	A	A	1232286	1	1	168	0	1	0	0	0	0	0	0	0	14795	638	22	2		2	SLC6A18	5	1232286	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	23412	1232286	179682974	618	137609											
SLC6A18	348932	broad.mit.edu	37	chr5	1240700	1240700	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcaacaggatgacctcCctgtacgcgtccatcgctgt	10	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1240700	A	A	1240700	2	1	168	1	0	0	0	0	0	0	0	1	14795	610	22	2		2	SLC6A18	5	1240700	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	8414	1240700	179674560	619	137610											
ADAMTS16	170690	broad.mit.edu	37	chr5	5262931	5262932	+	Intron	DNP	CA	AG	AG													gttcatcaaagcaggtttccCagtttgcagacgtgctcagc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	5262932	AG	AG	5262931	1	1	168	0	1	0	0	0	0	0	0	0	261	609	21	2		2	ADAMTS16	5	5262931	Intron	DNP	CA	TCGA-50-6590-01A-12D-1855-08	4022231	5262931	175652329	620	137611											
SEMA5A	9037	broad.mit.edu	37	chr5	9190652	9190652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagctggctgtggccaccCtagctggaaagtaacttgga	12	11	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9190652	A	A	9190652	1	1	168	0	1	0	0	0	0	0	0	0	14150	696	24	2		2	SEMA5A	5	9190652	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3927721	9190652	171724608	621	137612											
SEMA5A	9037	broad.mit.edu	37	chr5	9197405	9197406	+	Frame_Shift_Ins	INS	-	A	A													acgcacacagctgaggccgcINSaatgctgttcctgggagcgg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9197406	A	A	9197405	7	5	168	1	0	1	1	0	0	0	0	0	14150	710	25	0	2337	0	SEMA5A	5	9197405	Frame_Shift_Ins	INS	-	TCGA-50-6590-01A-12D-1855-08	6753	9197405	171717855	622	137613											
TRIO	7204	broad.mit.edu	37	chr5	14487460	14487460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggggttgctctgcgccCctgcacggggtctgccccat	16	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14487460	A	A	14487460	1	1	168	0	1	0	0	0	0	0	0	0	16677	638	22	2		2	TRIO	5	14487460	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5290055	14487460	166427800	623	137614											
CDH12	1010	broad.mit.edu	37	chr5	21884289	21884289	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgagaactgctttattGgatgctgctggtgtggcctc	13	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21884289	A	A	21884289	1	1	168	0	1	0	0	0	0	0	0	0	3128	1363	47	4		4	CDH12	5	21884289	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	7396829	21884289	159030971	624	137615											
CDH12	1010	broad.mit.edu	37	chr5	21975500	21975500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtcggaatggagctttaGggaagagaaggagagagaga	17	2	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21975500	T	T	21975500	1	4	168	0	1	0	0	0	0	0	0	0	3128	1015	35	2		2	CDH12	5	21975500	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	91211	21975500	158939760	625	137616											
PRDM9	56979	broad.mit.edu	37	chr5	23522881	23522881	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcaggcatccctcaggctGggcttggagtatggaatgag	14	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23522881	A	A	23522881	3	1	168	1	0	0	0	0	1	0	0	0	12569	1348	47	4	795	4	PRDM9	5	23522881	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1547381	23522881	157392379	626	137617											
CDH10	1008	broad.mit.edu	37	chr5	24487965	24487965	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcgtaggggggtgcggtgGggtcaagatcatgctctttt	17	6	3	1	rs143036065		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24487965	C	C	24487965	3	2	168	1	0	0	0	0	1	0	0	0	3126	1232	43	4	196	4	CDH10	5	24487965	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	965084	24487965	156427295	627	137618											
PDZD2	23037	broad.mit.edu	37	chr5	31983859	31983859	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgggaaatacaagctgggctCagaaccagaattttgaaaga	11	7	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31983859	G	G	31983859	1	3	168	0	1	0	0	0	0	0	0	0	11795	841	29	4		4	PDZD2	5	31983859	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	7495894	31983859	148931401	628	137619											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576137	33576137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttccatgtaaaaccaggCcaggggtaggaaatgtctta	10	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33576137	A	A	33576137	1	1	168	0	1	0	0	0	0	0	0	0	257	754	26	3		3	ADAMTS12	5	33576137	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1592278	33576137	147339123	629	137620											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658341	33658341	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagggagtcccgaatcttCattgatgttacaactgcggt	11	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33658341	T	T	33658341	3	4	168	1	0	0	0	0	1	0	0	0	257	835	29	4	3718	4	ADAMTS12	5	33658341	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	82204	33658341	147256919	630	137621											
SPEF2	79925	broad.mit.edu	37	chr5	35700934	35700934	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaatactcccatttacAattataaatgagtacaaaat	4	7	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35700934	C	C	35700934	1	2	168	0	1	0	0	0	0	0	0	0	15153	145	5	5		5	SPEF2	5	35700934	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	2042593	35700934	145214326	631	137622											
WDR70	55100	broad.mit.edu	37	chr5	37379354	37379354	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgctcttggcttcggcgGcgccgctgtagcttgaaggc	15	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37379354	T	T	37379354	1	4	168	0	1	0	0	0	0	0	0	0	17448	1218	42	3		3	WDR70	5	37379354	5'Flank	SNP	G	TCGA-50-6590-01A-12D-1855-08	1678420	37379354	143535906	632	137623											
EGFLAM	133584	broad.mit.edu	37	chr5	38406128	38406128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatgtttccaatacactgCgttccattcggtacagctct	7	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38406128	A	A	38406128	1	1	168	0	1	0	0	0	0	0	0	0	5006	783	27	3		3	EGFLAM	5	38406128	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1026774	38406128	142509132	633	137624											
FYB	2533	broad.mit.edu	37	chr5	39202772	39202772	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggggtctctggtggtcaaGctggctggtgttccgaatct	15	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39202772	A	A	39202772	2	1	168	1	0	0	0	0	0	0	0	1	6184	962	34	4		4	FYB	5	39202772	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	796644	39202772	141712488	634	137625											
C7	730	broad.mit.edu	37	chr5	40909775	40909775	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcttttcaaatgaacgggGgtaatataaatgtaatttaa	7	3	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40909775	C	C	40909775	1	2	168	0	1	0	0	0	0	0	0	0	2400	1247	43	4		4	C7	5	40909775	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1707003	40909775	140005485	635	137626											
HEATR7B2	133558	broad.mit.edu	37	chr5	41058230	41058230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccagggcacctggcccaGggcgtatccacggaagtctt	14	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41058230	T	T	41058230	3	4	168	1	0	0	0	0	1	0	0	0	7102	991	35	2	4210	2	HEATR7B2	5	41058230	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	148455	41058230	139857030	636	137627											
MGC42105	167359	broad.mit.edu	37	chr5	43280085	43280085	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgtcttcttccacagcatGaaaaccaaattattcataga	4	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43280085	T	T	43280085	4	4	168	1	0	0	0	0	0	1	0	0	9645	1291	45	3	575	3	MGC42105	5	43280085	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2221855	43280085	137635175	637	137628											
RGS7BP	401190	broad.mit.edu	37	chr5	63802459	63802459	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggatgtgtatgcatgagttCtgcaccgaatgggcgcaaaa	13	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63802459	A	A	63802459	3	1	168	1	0	0	0	0	1	0	0	0	13420	913	32	3	10	3	RGS7BP	5	63802459	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	20522374	63802459	117112801	638	137629											
MCCC2	64087	broad.mit.edu	37	chr5	70944904	70944904	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccatcacccagaggctctCtttctgatctttctctcagg	6	15	6	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70944904	G	G	70944904	1	3	168	0	1	0	0	0	0	0	0	0	9468	928	32	4		4	MCCC2	5	70944904	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	7142445	70944904	109970356	639	137630											
MCCC2	64087	broad.mit.edu	37	chr5	70946038	70946038	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgttttctcttgtttctctCtggttttgcctctcaccata	5	12	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70946038	T	T	70946038	1	4	168	0	1	0	0	0	0	0	0	0	9468	928	32	4		4	MCCC2	5	70946038	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1134	70946038	109969222	640	137631											
FAM169A	26049	broad.mit.edu	37	chr5	74095433	74095433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcggtggcactggtggCtgggtccacggggtcagctt	20	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74095433	A	A	74095433	1	1	168	0	1	0	0	0	0	0	0	0	5532	812	28	3		3	FAM169A	5	74095433	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3149395	74095433	106819827	641	137632											
FAM169A	26049	broad.mit.edu	37	chr5	74096686	74096686	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaaataaaaaatgagagtAaaatcaacaattatttactt	3	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74096686	T	T	74096686	1	4	168	0	1	0	0	0	0	0	0	0	5532	377	13	5		5	FAM169A	5	74096686	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1253	74096686	106818574	642	137633											
IQGAP2	10788	broad.mit.edu	37	chr5	75969934	75969934	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaccaacatataactttGtaagattattccccatgtat	3	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75969934	T	T	75969934	1	4	168	0	1	0	0	0	0	0	0	0	7885	1392	48	3		3	IQGAP2	5	75969934	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1873248	75969934	104945326	643	137634											
VCAN	1462	broad.mit.edu	37	chr5	82836667	82836667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatgaaagtaatgatgaCagcactcaagttcaagagat	9	5	2	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82836667	A	A	82836667	3	1	168	1	0	0	0	0	1	0	0	0	17265	477	17	3	7871	3	VCAN	5	82836667	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	6866733	82836667	98078593	644	137635											
EDIL3	10085	broad.mit.edu	37	chr5	83433051	83433051	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacacatacacacacgtgaAtacttactgtattgacaatt	4	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83433051	T	T	83433051	1	4	168	0	1	0	0	0	0	0	0	0	4955	116	4	5		5	EDIL3	5	83433051	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	596384	83433051	97482209	645	137636											
RASA1	5921	broad.mit.edu	37	chr5	86676247	86676247	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaactgtggtatatttggGtaaattaagcttttggctgc	11	4	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86676247	A	A	86676247	1	1	168	0	1	0	0	0	0	0	0	0	13168	1276	44	4		4	RASA1	5	86676247	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3243196	86676247	94239013	646	137637											
CAST	831	broad.mit.edu	37	chr5	96076323	96076323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcgttttgaggtactggGgttaagacttgaacatatag	12	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96076323	T	T	96076323	1	4	168	0	1	0	0	0	0	0	0	0	2710	1247	43	2		2	CAST	5	96076323	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	9400076	96076323	84838937	647	137638											
ST8SIA4	7903	broad.mit.edu	37	chr5	100231285	100231285	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccataaatccagtgttgaAtacaagtttgccaagcccaa	6	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100231285	C	C	100231285	1	2	168	0	1	0	0	0	0	0	0	0	15352	116	4	5		5	ST8SIA4	5	100231285	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	4154962	100231285	80683975	648	137639											
FBXL17	64839	broad.mit.edu	37	chr5	107684001	107684001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattaagtagtatttgaacCatcacaagaaaataagcaga	7	5	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107684001	A	A	107684001	1	1	168	0	1	0	0	0	0	0	0	0	5770	609	21	2		2	FBXL17	5	107684001	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	7452716	107684001	73231259	649	137640											
MAN2A1	4124	broad.mit.edu	37	chr5	109051935	109051935	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acactgaaccccttcaagtcTttgtggtgcctcattcccat	6	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109051935	C	C	109051935	3	2	168	1	0	0	0	0	1	0	0	0	9306	1609	56	5	515	5	MAN2A1	5	109051935	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1367934	109051935	71863325	650	137641											
MAN2A1	4124	broad.mit.edu	37	chr5	109065175	109065175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttacctttcaaagtggtGggatattatagatattcaga	8	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109065175	T	T	109065175	3	4	168	1	0	0	0	0	1	0	0	0	9306	1357	47	2	682	2	MAN2A1	5	109065175	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	13240	109065175	71850085	651	137642											
MCC	4163	broad.mit.edu	37	chr5	112389554	112389554	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcatggtcagcttgacCgcagccctgtcattcttgag	10	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112389554	A	A	112389554	2	1	168	1	0	0	0	0	0	0	0	1	9466	639	23	1		1	MCC	5	112389554	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3324379	112389554	68525706	652	137643											
TSSK1B	83942	broad.mit.edu	37	chr5	112769535	112769535	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctccgactgcctggacatTtgcattgctgtcccctcggg	10	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112769535	C	C	112769535	2	2	168	1	0	0	0	0	0	0	0	1	16793	1838	64	5		5	TSSK1B	5	112769535	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	379981	112769535	68145725	653	137644											
KCNN2	3781	broad.mit.edu	37	chr5	113699509	113699509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttccttctgtgagttcaGgtccacctgtgggggactga	12	10	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113699509	T	T	113699509	1	4	168	0	1	0	0	0	0	0	0	0	8149	1015	35	2		2	KCNN2	5	113699509	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	929974	113699509	67215751	654	137645											
KCNN2	3781	broad.mit.edu	37	chr5	113740528	113740528	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcattatggataattgccGcatggactgtccgagcttgt	10	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113740528	C	C	113740528	3	2	168	1	0	0	0	0	1	0	0	0	8149	1087	38	4	986	4	KCNN2	5	113740528	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	41019	113740528	67174732	655	137646											
DMXL1	1657	broad.mit.edu	37	chr5	118485675	118485675	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctagtggaagcactaccagaGacccccaggcattcaacaag	9	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118485675	T	T	118485675	3	4	168	1	0	0	0	0	1	0	0	0	4634	942	33	3	4223	3	DMXL1	5	118485675	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4745147	118485675	62429585	656	137647											
FTMT	94033	broad.mit.edu	37	chr5	121187928	121187928	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaacctcgagctctatgcGtcctacgtgtacttgtccat	7	13	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121187928	T	T	121187928	2	4	168	1	0	0	0	0	0	0	0	1	6145	1132	40	3		3	FTMT	5	121187928	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2702253	121187928	59727332	657	137648											
SNCAIP	9627	broad.mit.edu	37	chr5	121759041	121759041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagagctcatcatccaaCatggcaccattttgtgttct	7	11	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121759041	A	A	121759041	3	1	168	1	0	0	0	0	1	0	0	0	14955	477	17	3	619	3	SNCAIP	5	121759041	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	571113	121759041	59156219	658	137649											
CEP120	153241	broad.mit.edu	37	chr5	122734824	122734824	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccaatctcatgaaaagTctcacctgttccaactgggt	7	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122734824	C	C	122734824	1	2	168	0	1	0	0	0	0	0	0	0	3276	1682	58	5		5	CEP120	5	122734824	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	975783	122734824	58180436	659	137650											
FBN2	2201	broad.mit.edu	37	chr5	127611615	127611615	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcaataacatggccactagGatgggaccttttaatgaagg	11	7	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127611615	A	A	127611615	1	1	168	0	1	0	0	0	0	0	0	0	5760	1189	41	4		4	FBN2	5	127611615	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4876791	127611615	53303645	660	137651											
CHSY3	337876	broad.mit.edu	37	chr5	129520882	129520882	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaccagaacaagtaccccAaagcagaaatgaccctgatc	8	12	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129520882	G	G	129520882	3	3	168	1	0	0	0	0	1	0	0	0	3444	131	5	5	2057	5	CHSY3	5	129520882	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1909267	129520882	51394378	661	137652											
FBXL21	26223	broad.mit.edu	37	chr5	135272755	135272755	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtgaattttgcaaatcAttttatccaaagaggtttcc	7	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135272755	T	T	135272755	1	4	168	0	1	0	0	0	0	0	0	0	5775	232	8	5		5	FBXL21	5	135272755	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	5751873	135272755	45642505	662	137653											
LECT2	3950	broad.mit.edu	37	chr5	135288490	135288490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccttgaggcaaccaacGttgggcaaggacactaagaa	12	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135288490	T	T	135288490	1	4	168	0	1	0	0	0	0	0	0	0	8785	1160	40	3		3	LECT2	5	135288490	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	15735	135288490	45626770	663	137654											
TRPC7	57113	broad.mit.edu	37	chr5	135692735	135692735	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcacatagcccttgctgAtggccagcagcagcgcgtcc	12	15	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135692735	G	G	135692735	3	3	168	1	0	0	0	0	1	0	0	0	16709	333	12	5	2291	5	TRPC7	5	135692735	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	404245	135692735	45222525	664	137655											
PKD2L2	27039	broad.mit.edu	37	chr5	137271488	137271488	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcctctaccctgacaggaGattcaaaacgcagagcagat	9	11	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137271488	C	C	137271488	3	2	168	1	0	0	0	0	1	0	0	0	12063	933	33	4	1724	4	PKD2L2	5	137271488	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1578753	137271488	43643772	665	137656											
CXXC5	51523	broad.mit.edu	37	chr5	139060161	139060161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcggcagtagcagcagcaGcaccaatggcagcggtggca	16	12	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139060161	T	T	139060161	3	4	168	1	0	0	0	0	1	0	0	0	4132	971	34	3	55	3	CXXC5	5	139060161	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1788673	139060161	41855099	666	137657											
PURA	5813	broad.mit.edu	37	chr5	139494510	139494510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttatgcgagtgagcgaGgtgaagcccacctatcgcaa	13	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139494510	T	T	139494510	3	4	168	1	0	0	0	0	1	0	0	0	12935	991	35	2	746	2	PURA	5	139494510	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	434349	139494510	41420750	667	137658											
PCDHA4	56144	broad.mit.edu	37	chr5	140188385	140188385	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtttcaggtgaccgctcGcgatgccggcgtgccacctc	13	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140188385	A	A	140188385	3	1	168	1	0	0	0	0	1	0	0	0	11620	1087	38	4	1615	4	PCDHA4	5	140188385	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	693875	140188385	40726875	668	137659											
PCDHA6	56142	broad.mit.edu	37	chr5	140209566	140209566	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggggctgtacacgggcgaGatcagcaccactcgtgtcct	14	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140209566	T	T	140209566	3	4	168	1	0	0	0	0	1	0	0	0	11622	933	33	3	1892	3	PCDHA6	5	140209566	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	21181	140209566	40705694	669	137660											
PCDHA13	56136	broad.mit.edu	37	chr5	140262628	140262628	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagagaacgccttcaatggaAcattagtgatcaagctaaat	8	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140262628	C	C	140262628	3	2	168	1	0	0	0	0	1	0	0	0	11617	43	2	5	777	5	PCDHA13	5	140262628	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	53062	140262628	40652632	670	137661											
PCDHB5	26167	broad.mit.edu	37	chr5	140515534	140515534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcagaactacacaatcaGcccaaattcacactttcatg	4	12	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140515534	T	T	140515534	3	4	168	1	0	0	0	0	1	0	0	0	11639	971	34	3	520	3	PCDHB5	5	140515534	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	252906	140515534	40399726	671	137662											
PCDHB5	26167	broad.mit.edu	37	chr5	140515984	140515984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaattgtagccacagatgGtgggggcctttcaggaaaat	14	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140515984	C	C	140515984	3	2	168	1	0	0	0	0	1	0	0	0	11639	1261	44	4	970	4	PCDHB5	5	140515984	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	450	140515984	40399276	672	137663											
PCDHB16	57717	broad.mit.edu	37	chr5	140564055	140564055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcagccaagcagaggctgGtggtgctggtcaaggacaat	15	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140564055	T	T	140564055	3	4	168	1	0	0	0	0	1	0	0	0	11635	1261	44	3	1923	3	PCDHB16	5	140564055	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	48071	140564055	40351205	673	137664											
PCDHGA3	56112	broad.mit.edu	37	chr5	140723724	140723724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgaggagctagataaaGgttccttcgtgggcaacatc	12	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140723724	T	T	140723724	3	4	168	1	0	0	0	0	1	0	0	0	11649	1000	35	2	126	2	PCDHGA3	5	140723724	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	159669	140723724	40191536	674	137665											
PCDHGA4	56111	broad.mit.edu	37	chr5	140737040	140737040	+	Frame_Shift_Del	DEL	C	-	-													gacctattcccacgaggtctCcctcaccgcggactcgcgga							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140737040	-	-	140737040	7	5	168	1	0	1	0	1	0	0	0	0	11650	855	30	0	2275	0	PCDHGA4	5	140737040	Frame_Shift_Del	DEL	C	TCGA-50-6590-01A-12D-1855-08	13316	140737040	40178220	675	137666											
ARAP3	64411	broad.mit.edu	37	chr5	141052406	141052406	+	Frame_Shift_Del	DEL	G	-	-													catgcccgtgcggaggggtcGgggtggttgggggggccggg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141052406	-	-	141052406	7	5	168	1	0	1	0	1	0	0	0	0	842	1124	39	0	3558	0	ARAP3	5	141052406	Frame_Shift_Del	DEL	G	TCGA-50-6590-01A-12D-1855-08	315366	141052406	39862854	676	137667											
TCERG1	10915	broad.mit.edu	37	chr5	145858034	145858034	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctgtaacataagagaatGatattttgcatcaattctta	6	5	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145858034	T	T	145858034	1	4	168	0	1	0	0	0	0	0	0	0	15807	1305	45	3		3	TCERG1	5	145858034	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4805628	145858034	35057226	677	137668											
GPR151	134391	broad.mit.edu	37	chr5	145894570	145894570	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttttccctttgccagaGgagggagagctgggtttctc	13	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145894570	T	T	145894570	2	4	168	1	0	0	0	0	0	0	0	1	6722	987	35	2		2	GPR151	5	145894570	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	36536	145894570	35020690	678	137669											
PPP2R2B	5521	broad.mit.edu	37	chr5	145972654	145972654	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacatatcgagaaggtcaGttattattttaaacagtaat	7	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145972654	A	A	145972654	1	1	168	0	1	0	0	0	0	0	0	0	12486	1044	36	4		4	PPP2R2B	5	145972654	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	78084	145972654	34942606	679	137670											
PPP2R2B	5521	broad.mit.edu	37	chr5	146086564	146086564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctctacctcgttaatGtaagcttcatccacatcctt	4	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146086564	T	T	146086564	1	4	168	0	1	0	0	0	0	0	0	0	12486	1392	48	3		3	PPP2R2B	5	146086564	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	113910	146086564	34828696	680	137671											
ABLIM3	22885	broad.mit.edu	37	chr5	148563037	148563037	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttatcagcagaatccttaCaatccacggggcagctccaa	7	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148563037	A	A	148563037	4	1	168	1	0	0	0	0	0	1	0	0	96	489	17	3	42	3	ABLIM3	5	148563037	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2476473	148563037	32352223	681	137672											
ABLIM3	22885	broad.mit.edu	37	chr5	148625996	148625996	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatgccttaagccagGctgagtggggtgcacatgcc	12	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148625996	C	C	148625996	1	2	168	0	1	0	0	0	0	0	0	0	96	1218	42	4		4	ABLIM3	5	148625996	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	62959	148625996	32289264	682	137673											
GLRA1	2741	broad.mit.edu	37	chr5	151208695	151208695	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaaaacattaagcatggcgGaatattttctgctcttcggt	9	7	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151208695	A	A	151208695	1	1	168	0	1	0	0	0	0	0	0	0	6518	1189	41	4		4	GLRA1	5	151208695	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2582699	151208695	29706565	683	137674											
GLRA1	2741	broad.mit.edu	37	chr5	151231016	151231016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcacagtggtgatgcctaGgcccacacgagcaggtgcag	15	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151231016	T	T	151231016	3	4	168	1	0	0	0	0	1	0	0	0	6518	991	35	2	538	2	GLRA1	5	151231016	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	22321	151231016	29684244	684	137675											
GRIA1	2890	broad.mit.edu	37	chr5	153077664	153077664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccgatgcccaagctgggGgcgataattcaagtgttcag	12	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153077664	T	T	153077664	3	4	168	1	0	0	0	0	1	0	0	0	6833	1232	43	2	1229	2	GRIA1	5	153077664	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1846648	153077664	27837596	685	137676											
LARP1	23367	broad.mit.edu	37	chr5	154173492	154173492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggggctggtggggcgcGggcttccttccgtggccgtg	20	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154173492	T	T	154173492	3	4	168	1	0	0	0	0	1	0	0	0	8700	1116	39	1	792	1	LARP1	5	154173492	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1095828	154173492	26741768	686	137677											
KIF4B	285643	broad.mit.edu	37	chr5	154394127	154394127	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctttcgctccaagctGcatcttgtagatctcgctgg	10	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154394127	T	T	154394127	2	4	168	1	0	0	0	0	0	0	0	1	8374	1306	46	3		3	KIF4B	5	154394127	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	220635	154394127	26521133	687	137678											
ITK	3702	broad.mit.edu	37	chr5	156671325	156671325	+	Frame_Shift_Del	DEL	C	-	-													tggggtgtgcctggagcaggCccccatctgcctggtgtttg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156671325	-	-	156671325	7	5	168	1	0	1	0	1	0	0	0	0	7979	739	26	0	1336	0	ITK	5	156671325	Frame_Shift_Del	DEL	C	TCGA-50-6590-01A-12D-1855-08	2277198	156671325	24243935	688	137679											
FABP6	2172	broad.mit.edu	37	chr5	159640816	159640816	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagagaatgaaacagacacAtaaaggaaaggtatggggta	13	4	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159640816	T	T	159640816	3	4	168	1	0	0	0	0	1	0	0	0	5407	217	8	5	131	5	FABP6	5	159640816	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2969491	159640816	21274444	689	137680											
GABRA6	2559	broad.mit.edu	37	chr5	161115927	161115927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcaaactatctttccagCccacacaaatattttatttt	2	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161115927	A	A	161115927	1	1	168	0	1	0	0	0	0	0	0	0	6225	754	26	3		3	GABRA6	5	161115927	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1475111	161115927	19799333	690	137681											
GABRA1	2554	broad.mit.edu	37	chr5	161300031	161300031	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagctaacattatacttccAaagttgcaaaaattatgcac	4	9	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161300031	G	G	161300031	1	3	168	0	1	0	0	0	0	0	0	0	6220	145	5	5		5	GABRA1	5	161300031	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	184104	161300031	19615229	691	137682											
GABRA1	2554	broad.mit.edu	37	chr5	161324018	161324018	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaattcctaaataaggcaCagatttaggctgcaaaataa	6	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161324018	T	T	161324018	1	4	168	0	1	0	0	0	0	0	0	0	6220	493	17	4		4	GABRA1	5	161324018	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	23987	161324018	19591242	692	137683											
SLIT3	6586	broad.mit.edu	37	chr5	168201449	168201449	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgcggggcaagggttgcAcctgcaggggatgggctgca	18	10	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168201449	T	T	168201449	1	4	168	0	1	0	0	0	0	0	0	0	14855	174	6	5		5	SLIT3	5	168201449	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	6877431	168201449	12713811	693	137684											
DOCK2	1794	broad.mit.edu	37	chr5	169477107	169477107	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctgctaggtcagtgagttGagcccttcctttccctgtgg	11	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169477107	T	T	169477107	1	4	168	0	1	0	0	0	0	0	0	0	4727	1305	45	3		3	DOCK2	5	169477107	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1275658	169477107	11438153	694	137685											
FOXI1	2299	broad.mit.edu	37	chr5	169535194	169535194	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagacagagagcagtctccCggtggacagccccaagacca	12	13	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169535194	T	T	169535194	3	4	168	1	0	0	0	0	1	0	0	0	6069	652	23	4	722	4	FOXI1	5	169535194	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	58087	169535194	11380066	695	137686											
KCNMB1	3779	broad.mit.edu	37	chr5	169805970	169805970	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccacgctgcctgggatgTaggagcactgtggggagaaa	16	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169805970	A	A	169805970	3	1	168	1	0	0	0	0	1	0	0	0	8144	1638	57	5	265	5	KCNMB1	5	169805970	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	270776	169805970	11109290	696	137687											
FAM153B	202134	broad.mit.edu	37	chr5	175526171	175526171	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctattggaaaatggggtTtgggaagaaatttctaagag	12	3	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175526171	C	C	175526171	1	2	168	0	1	0	0	0	0	0	0	0	5507	1856	64	5		5	FAM153B	5	175526171	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	5720201	175526171	5389089	697	137688											
UNC5A	90249	broad.mit.edu	37	chr5	176301472	176301472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcgtctcccgcctctccaCccagaactacttccgctccc	5	21	2	1	rs150952594		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176301472	A	A	176301472	3	1	168	1	0	0	0	0	1	0	0	0	17117	507	18	3	1313	3	UNC5A	5	176301472	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	775301	176301472	4613788	698	137689											
NSD1	64324	broad.mit.edu	37	chr5	176637041	176637041	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatatatctgatacgcaggcCtctaatgaactttccaggat	8	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176637041	T	T	176637041	2	4	168	1	0	0	0	0	0	0	0	1	10764	668	24	4		4	NSD1	5	176637041	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	335569	176637041	4278219	699	137690											
MYLK4	340156	broad.mit.edu	37	chr6	2675455	2675455	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttctgccttcgggagacCagatggccgaatgtcaactc	11	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2675455	T	T	2675455	1	4	168	0	1	0	0	0	0	0	0	0	10153	609	21	4		4	MYLK4	6	2675455	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08		2675455	168439612	700	137691											
SERPINB6	5269	broad.mit.edu	37	chr6	2949010	2949010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctatgctgtggatgcCagacaccagtggcagcgtgg	15	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2949010	A	A	2949010	1	1	168	0	1	0	0	0	0	0	0	0	14218	609	21	2		2	SERPINB6	6	2949010	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	273555	2949010	168166057	701	137692											
PRPF4B	8899	broad.mit.edu	37	chr6	4056899	4056899	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggaaaatcctcgactttaGaagactgctcttgattattc	8	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4056899	A	A	4056899	1	1	168	0	1	0	0	0	0	0	0	0	12679	957	33	4		4	PRPF4B	6	4056899	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1107889	4056899	167058168	702	137693											
F13A1	2162	broad.mit.edu	37	chr6	6145984	6145984	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacttcttcccactgcacGgtggagttgggccggatttc	11	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6145984	T	T	6145984	2	4	168	1	0	0	0	0	0	0	0	1	5383	1103	39	1		1	F13A1	6	6145984	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2089085	6145984	164969083	703	137694											
TFAP2A	7020	broad.mit.edu	37	chr6	10404933	10404933	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccttgttaatagggatggcgGagacggcattgctgttggac	15	7	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10404933	C	C	10404933	3	2	168	1	0	0	0	0	1	0	0	0	15910	1174	41	4	757	4	TFAP2A	6	10404933	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4258949	10404933	160710134	704	137695											
JARID2	3720	broad.mit.edu	37	chr6	15501370	15501370	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaaggaggtgctgatggaGaaggagatcctggagaagcg	19	4	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15501370	T	T	15501370	3	4	168	1	0	0	0	0	1	0	0	0	8015	933	33	3	2208	3	JARID2	6	15501370	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5096437	15501370	155613697	705	137696											
NUP153	9972	broad.mit.edu	37	chr6	17669394	17669395	+	Intron	DNP	CT	AA	AA													atcttgactcactgcaacctCtgcctcccaagttcaagtga							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	17669395	AA	AA	17669394	1	1	168	0	1	0	0	0	0	0	0	0	10850	928	32	3		3	NUP153	6	17669394	Intron	DNP	CT	TCGA-50-6590-01A-12D-1855-08	2168024	17669394	153445673	706	137697											
KIF13A	63971	broad.mit.edu	37	chr6	17777458	17777458	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccaccttcccccaccccaGaggctgcgacatgtcacata	6	19	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17777458	A	A	17777458	1	1	168	0	1	0	0	0	0	0	0	0	8344	957	33	4		4	KIF13A	6	17777458	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	108064	17777458	153337609	707	137698											
MBOAT1	154141	broad.mit.edu	37	chr6	20110008	20110008	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaacacaggcaacagtagtGaggagggggtgaaaaacaaa	13	7	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20110008	A	A	20110008	1	1	168	0	1	0	0	0	0	0	0	0	9449	1305	45	4		4	MBOAT1	6	20110008	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2332550	20110008	151005059	708	137699											
SLC17A3	10786	broad.mit.edu	37	chr6	25851096	25851096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaggcagcagacacagCcaacacctcctgtaagcaca	9	13	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25851096	A	A	25851096	3	1	168	1	0	0	0	0	1	0	0	0	14531	739	26	3	798	3	SLC17A3	6	25851096	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	5741088	25851096	145263971	709	137700											
HIST1H3B	8358	broad.mit.edu	37	chr6	26033861	26033861	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactacattagaacgcaaggCagagaagtatttatactgac	8	7	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26033861	T	T	26033861	1	4	168	0	1	0	0	0	0	0	0	0	7223	725	25	4		4	HIST1H3B	6	26033861	5'Flank	SNP	C	TCGA-50-6590-01A-12D-1855-08	182765	26033861	145081206	710	137701											
HIST1H3D	8351	broad.mit.edu	37	chr6	26197400	26197400	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtggctggagcgctctttcGagcagccttggtggccagct	16	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26197400	C	C	26197400	3	2	168	1	0	0	0	0	1	0	0	0	7225	1066	37	4	335	4	HIST1H3D	6	26197400	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	163539	26197400	144917667	711	137702											
HIST1H2AE	3012	broad.mit.edu	37	chr6	26217622	26217622	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactagtcaaatccgtcagtGatcccgagtcccagaaacca	7	13	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26217622	C	C	26217622	1	2	168	0	1	0	0	0	0	0	0	0	7199	1305	45	4		4	HIST1H2AE	6	26217622	3'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	20222	26217622	144897445	712	137703											
BTN2A1	11120	broad.mit.edu	37	chr6	26463790	26463790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagactcgtcgagtgcatGggggatcctcagcacacaga	13	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26463790	T	T	26463790	1	4	168	0	1	0	0	0	0	0	0	0	1570	1363	47	2		2	BTN2A1	6	26463790	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	246168	26463790	144651277	713	137704											
BTN1A1	696	broad.mit.edu	37	chr6	26509123	26509123	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgaatcaggagacatctcCttctacaacatgaatgatgg	8	8	3	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26509123	G	G	26509123	2	3	168	1	0	0	0	0	0	0	0	1	1569	668	24	4		4	BTN1A1	6	26509123	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	45333	26509123	144605944	714	137705											
ABT1	29777	broad.mit.edu	37	chr6	26598587	26598587	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagcggaggttgctcaagCcaagcgtgagaccgacttct	14	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26598587	G	G	26598587	3	3	168	1	0	0	0	0	1	0	0	0	101	739	26	4	543	4	ABT1	6	26598587	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	89464	26598587	144516480	715	137706											
OR2B6	26212	broad.mit.edu	37	chr6	27925657	27925657	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catctaatacccctgacactCatccttatatcatatgcttt	2	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27925657	A	A	27925657	2	1	168	1	0	0	0	0	0	0	0	1	11085	813	29	3		3	OR2B6	6	27925657	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1327070	27925657	143189410	716	137707											
PGBD1	84547	broad.mit.edu	37	chr6	28254867	28254867	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgcagggcctgttccCcacggatcagctcatctcca	8	17	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28254867	T	T	28254867	2	4	168	1	0	0	0	0	0	0	0	1	11875	610	22	4		4	PGBD1	6	28254867	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	329210	28254867	142860200	717	137708											
SCAND3	114821	broad.mit.edu	37	chr6	28541542	28541542	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttcttttattactactActgtgttcagaaaaggcatg	6	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28541542	T	T	28541542	3	4	168	1	0	0	0	0	1	0	0	0	13988	388	14	5	1857	5	SCAND3	6	28541542	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	286675	28541542	142573525	718	137709											
ZNF311	282890	broad.mit.edu	37	chr6	28971290	28971290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatctcctgtgtatctcacCgctttcctgagggagctggg	11	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28971290	A	A	28971290	3	1	168	1	0	0	0	0	1	0	0	0	17960	666	23	1	1929	1	ZNF311	6	28971290	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	429748	28971290	142143777	719	137710											
OR2B3	442184	broad.mit.edu	37	chr6	29054630	29054630	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caataattcatgatgactacAtagtggaggggtctgcaaac	10	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29054630	G	G	29054630	2	3	168	1	0	0	0	0	0	0	0	1	11084	224	8	5		5	OR2B3	6	29054630	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	83340	29054630	142060437	720	137711											
GABBR1	2550	broad.mit.edu	37	chr6	29541780	29541780	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctttgtagttgtcttcacttCctacctcctaaccccggtgg	7	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29541780	A	A	29541780	1	1	168	0	1	0	0	0	0	0	0	0	6215	870	30	3		3	GABBR1	6	29541780	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	487150	29541780	141573287	721	137712											
GABBR1	2550	broad.mit.edu	37	chr6	29542555	29542555	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaccctgaggaacaaggAggtaaccagggcattcagga	12	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29542555	C	C	29542555	1	2	168	0	1	0	0	0	0	0	0	0	6215	319	11	5		5	GABBR1	6	29542555	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	775	29542555	141572512	722	137713											
HLA-F	3134	broad.mit.edu	37	chr6	29692182	29692182	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcgagtgcctggagttgctCcgcagatacttggagaatgg	16	8	0	2	rs138293991	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29692182	T	T	29692182	2	4	168	1	0	0	0	0	0	0	0	1	7278	842	30	4		4	HLA-F	6	29692182	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	149627	29692182	141422885	723	137714											
TRIM40	135644	broad.mit.edu	37	chr6	30115165	30115165	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagaatgggcacagaagaGgggtgttgctatgttccccc	14	9	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30115165	A	A	30115165	1	1	168	0	1	0	0	0	0	0	0	0	16639	1015	35	4		4	TRIM40	6	30115165	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	422983	30115165	140999902	724	137715											
MDC1	9656	broad.mit.edu	37	chr6	30672204	30672204	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctcaggggtgacaagctGgtttctggaggtggaaggct	19	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30672204	A	A	30672204	4	1	168	1	0	0	0	0	0	1	0	0	9496	1357	47	4	1537	4	MDC1	6	30672204	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	557039	30672204	140442863	725	137716											
CCHCR1	54535	broad.mit.edu	37	chr6	31125262	31125262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatctccagagttctctcCatggctcagcaaggcctgag	10	14	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31125262	A	A	31125262	1	1	168	0	1	0	0	0	0	0	0	0	2905	595	21	2		2	CCHCR1	6	31125262	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	453058	31125262	139989805	726	137717											
TNF	7124	broad.mit.edu	37	chr6	31544650	31544650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggatttggggattgaagcCcggctgatggtaggcagaac	16	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31544650	A	A	31544650	1	1	168	0	1	0	0	0	0	0	0	0	16394	638	22	2		2	TNF	6	31544650	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	419388	31544650	139570417	727	137718											
C6orf27	80737	broad.mit.edu	37	chr6	31734330	31734330	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggccaatcagctccagggaGaagggtctaggggtggacag	17	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31734330	C	C	31734330	3	2	168	1	0	0	0	0	1	0	0	0	2385	933	33	4	596	4	C6orf27	6	31734330	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	189680	31734330	139380737	728	137719											
VARS	7407	broad.mit.edu	37	chr6	31760738	31760738	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgaggagagcagtcttgTtcttccccaggcctggtgac	13	11	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31760738	C	C	31760738	1	2	168	0	1	0	0	0	0	0	0	0	17250	1740	60	5		5	VARS	6	31760738	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	26408	31760738	139354329	729	137720											
TNXB	7148	broad.mit.edu	37	chr6	32021402	32021402	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggggtggcatctgtcaCggtcagctccccgaggcgag	16	12	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32021402	T	T	32021402	3	4	168	1	0	0	0	0	1	0	0	0	16469	536	19	4	6245	4	TNXB	6	32021402	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	260664	32021402	139093665	730	137721											
TNXB	7148	broad.mit.edu	37	chr6	32035474	32035474	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacactgggcccacgcgccGcccctcgtggaggccgtaca	13	17	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32035474	T	T	32035474	2	4	168	1	0	0	0	0	0	0	0	1	16469	1086	38	3		3	TNXB	6	32035474	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	14072	32035474	139079593	731	137722											
NOTCH4	4855	broad.mit.edu	37	chr6	32180777	32180778	+	Intron	DNP	GG	TT	TT													ttgtcgggaggcaaccacagGgaggtggcaagccaggaggg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32180778	TT	TT	32180777	1	4	168	0	1	0	0	0	0	0	0	0	10646	1247	43	2		2	NOTCH4	6	32180777	Intron	DNP	GG	TCGA-50-6590-01A-12D-1855-08	145303	32180777	138934290	732	137723											
HLA-DQA1	3117	broad.mit.edu	37	chr6	32609933	32609933	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagtgatcattccttcttCaagatcagttacctcacctt	5	11	5	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32609933	T	T	32609933	2	4	168	1	0	0	0	0	0	0	0	1	7271	825	29	4		4	HLA-DQA1	6	32609933	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	429156	32609933	138505134	733	137724											
HLA-DQA2	3118	broad.mit.edu	37	chr6	32713752	32713752	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagtgatcattccttcttCaagatcagttacctcacctt	5	11	5	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32713752	T	T	32713752	2	4	168	1	0	0	0	0	0	0	0	1	7272	825	29	4		4	HLA-DQA2	6	32713752	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	103819	32713752	138401315	734	137725											
RPL10A	4736	broad.mit.edu	37	chr6	35436137	35436137	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggagcaaagcattatcgcGagatcagggccactatttga	12	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35436137	A	A	35436137	1	1	168	0	1	0	0	0	0	0	0	0	13666	1073	37	4		4	RPL10A	6	35436137	5'Flank	SNP	G	TCGA-50-6590-01A-12D-1855-08	2722385	35436137	135678930	735	137726											
TBC1D22B	55633	broad.mit.edu	37	chr6	37281631	37281631	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccaggaatccagaagaagGtgaaggcactggaagagctt	13	7	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37281631	A	A	37281631	3	1	168	1	0	0	0	0	1	0	0	0	15731	1261	44	4	1167	4	TBC1D22B	6	37281631	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1845494	37281631	133833436	736	137727											
C6orf129	154467	broad.mit.edu	37	chr6	37451048	37451048	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttccggttctcttgccgaaGaaacttcagttccttctctg	7	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37451048	C	C	37451048	3	2	168	1	0	0	0	0	1	0	0	0	2351	942	33	4	89	4	C6orf129	6	37451048	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	169417	37451048	133664019	737	137728											
MDGA1	266727	broad.mit.edu	37	chr6	37631870	37631870	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccgcatgcacgatctgcGcctgggctggagctggcagg	17	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37631870	A	A	37631870	3	1	168	1	0	0	0	0	1	0	0	0	9499	1087	38	4	2851	4	MDGA1	6	37631870	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	180822	37631870	133483197	738	137729											
DNAH8	1769	broad.mit.edu	37	chr6	38747767	38747767	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaagctgaacattccctgtCtgggattagaaataaaccac	8	9	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38747767	T	T	38747767	2	4	168	1	0	0	0	0	0	0	0	1	4647	912	32	4		4	DNAH8	6	38747767	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1115897	38747767	132367300	739	137730											
DNAH8	1769	broad.mit.edu	37	chr6	38830022	38830022	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtaacgtgtcatcccaTactcacaatgctttattgga	6	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38830022	C	C	38830022	1	2	168	0	1	0	0	0	0	0	0	0	4647	1421	49	5		5	DNAH8	6	38830022	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	82255	38830022	132285045	740	137731											
KCNK16	83795	broad.mit.edu	37	chr6	39286895	39286895	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttcacacctttcacccaGgcttccatgatgacctgtag	9	13	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39286895	T	T	39286895	2	4	168	1	0	0	0	0	0	0	0	1	8133	987	35	2		2	KCNK16	6	39286895	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	456873	39286895	131828172	741	137732											
TSPO2	222642	broad.mit.edu	37	chr6	41011324	41011324	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctacctggtgtggaaggacCtgggagggggcttggggtgg	21	7	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41011324	T	T	41011324	2	4	168	1	0	0	0	0	0	0	0	1	16781	680	24	4		4	TSPO2	6	41011324	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1724429	41011324	130103743	742	137733											
TREML2	79865	broad.mit.edu	37	chr6	41168740	41168740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcaggaaggctgGggccatggttccatccagct	14	12	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41168740	T	T	41168740	3	4	168	1	0	0	0	0	1	0	0	0	16597	1232	43	2	978	2	TREML2	6	41168740	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	157416	41168740	129946327	743	137734											
MED20	9477	broad.mit.edu	37	chr6	41874858	41874858	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctgcttgcggatcttgttGaagagttccatgtactggac	12	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41874858	A	A	41874858	2	1	168	1	0	0	0	0	0	0	0	1	9531	1281	45	4		4	MED20	6	41874858	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	706118	41874858	129240209	744	137735											
CAPN11	11131	broad.mit.edu	37	chr6	44148729	44148729	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgctgcatgatcaacctcAtggatgtatcctcctgtcca	8	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44148729	C	C	44148729	3	2	168	1	0	0	0	0	1	0	0	0	2650	217	8	5	1934	5	CAPN11	6	44148729	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2273871	44148729	126966338	745	137736											
ENPP5	59084	broad.mit.edu	37	chr6	46135616	46135616	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccactagtatgtcctgccctCtggtttgtgatccatattgg	9	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46135616	G	G	46135616	3	3	168	1	0	0	0	0	1	0	0	0	5175	912	32	4	1061	4	ENPP5	6	46135616	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1986887	46135616	124979451	746	137737											
PLA2G7	7941	broad.mit.edu	37	chr6	46680036	46680036	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcaactataaacccaTgagatgccaggtcaatgcca	8	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46680036	C	C	46680036	3	2	168	1	0	0	0	0	1	0	0	0	12104	1464	51	5	844	5	PLA2G7	6	46680036	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	544420	46680036	124435031	747	137738											
MEP1A	4224	broad.mit.edu	37	chr6	46800982	46800982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggggtctggacagtccGgaatttctcccaagtccttg	11	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46800982	T	T	46800982	3	4	168	1	0	0	0	0	1	0	0	0	9568	1116	39	1	1358	1	MEP1A	6	46800982	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	120946	46800982	124314085	748	137739											
GPR115	221393	broad.mit.edu	37	chr6	47682166	47682166	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attctcatgtcctccaaatcGatgaccgacaaagttctgga	7	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47682166	T	T	47682166	2	4	168	1	0	0	0	0	0	0	0	1	6697	1045	37	3		3	GPR115	6	47682166	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	881184	47682166	123432901	749	137740											
OPN5	221391	broad.mit.edu	37	chr6	47776036	47776036	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaatctgcagcgatgtaCaatcccatcatttaccaagt	6	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47776036	A	A	47776036	4	1	168	1	0	0	0	0	0	1	0	0	10977	489	17	3	921	3	OPN5	6	47776036	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	93870	47776036	123339031	750	137741											
C6orf138	442213	broad.mit.edu	37	chr6	47976530	47976530	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcatggagctggagagGgtggctgtggtcaggatcag	17	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47976530	T	T	47976530	2	4	168	1	0	0	0	0	0	0	0	1	2355	1219	43	2		2	C6orf138	6	47976530	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	200494	47976530	123138537	751	137742											
MUT	4594	broad.mit.edu	37	chr6	49409663	49409663	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacctttttcagggcatcTgtgatttctcccactgtaca	6	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49409663	A	A	49409663	2	1	168	1	0	0	0	0	0	0	0	1	10085	1567	55	5		5	MUT	6	49409663	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	1433133	49409663	121705404	752	137743											
CRISP2	7180	broad.mit.edu	37	chr6	49665594	49665594	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggacaatattggcaaacaTagtagtattttagactatct	7	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49665594	C	C	49665594	3	2	168	1	0	0	0	0	1	0	0	0	3912	1406	49	5	249	5	CRISP2	6	49665594	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	255931	49665594	121449473	753	137744											
PKHD1	5314	broad.mit.edu	37	chr6	51524450	51524450	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagccaagagaagcttggAggtacttttgttccccaata	9	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51524450	C	C	51524450	3	2	168	1	0	0	0	0	1	0	0	0	12066	304	11	5	1778	5	PKHD1	6	51524450	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1858856	51524450	119590617	754	137745											
PKHD1	5314	broad.mit.edu	37	chr6	51920329	51920329	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttttcagtcttgaatccaGagagcaataccaatacctac	6	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51920329	A	A	51920329	1	1	168	0	1	0	0	0	0	0	0	0	12066	957	33	4		4	PKHD1	6	51920329	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	395879	51920329	119194738	755	137746											
PKHD1	5314	broad.mit.edu	37	chr6	51938335	51938335	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccatatacatgtattagTtttcctgtttgaagaagaat	7	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51938335	C	C	51938335	2	2	168	1	0	0	0	0	0	0	0	1	12066	1722	60	5		5	PKHD1	6	51938335	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	18006	51938335	119176732	756	137747											
TRAM2	9697	broad.mit.edu	37	chr6	52400608	52400608	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcacgctaatgttatactGaggtaaaataaatagaaagg	10	4	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52400608	A	A	52400608	4	1	168	1	0	0	0	0	0	1	0	0	16577	1299	45	4	995	4	TRAM2	6	52400608	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	462273	52400608	118714459	757	137748											
FBXO9	26268	broad.mit.edu	37	chr6	52957177	52957177	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatagcaaaaatatttatgTctatgtatagggacttagtt	8	3	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52957177	A	A	52957177	1	1	168	0	1	0	0	0	0	0	0	0	5819	1682	58	5		5	FBXO9	6	52957177	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	556569	52957177	118157890	758	137749											
GCM1	8521	broad.mit.edu	37	chr6	52999205	52999205	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagtgagtagataggaagGatgttttggcattcaggagc	16	3	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52999205	T	T	52999205	1	4	168	0	1	0	0	0	0	0	0	0	6359	1189	41	3		3	GCM1	6	52999205	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	42028	52999205	118115862	759	137750											
C6orf142	90523	broad.mit.edu	37	chr6	54095709	54095709	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcagtcacaacgcatgCaacaaggtgagaactcctcc	7	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54095709	A	A	54095709	4	1	168	1	0	0	0	0	0	1	0	0	2356	718	25	3	1353	3	C6orf142	6	54095709	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1096504	54095709	117019358	760	137751											
HCRTR2	3062	broad.mit.edu	37	chr6	55119932	55119932	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgatctttcttttctctAgaccgtgtcggtgtctgtgt	9	9	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55119932	G	G	55119932	5	3	168	1	0	0	0	0	0	0	1	0	7069	434	15	5	411	5	HCRTR2	6	55119932	Splice_Site	SNP	A	TCGA-50-6590-01A-12D-1855-08	1024223	55119932	115995135	761	137752											
GFRAL	389400	broad.mit.edu	37	chr6	55216093	55216093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaagtggcagaggcatGtgtaggggatgtggtctgta	18	3	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55216093	T	T	55216093	3	4	168	1	0	0	0	0	1	0	0	0	6415	1377	48	3	431	3	GFRAL	6	55216093	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	96161	55216093	115898974	762	137753											
COL21A1	81578	broad.mit.edu	37	chr6	56141530	56141530	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcacggcttccttataaacaGaactgccatcaagtatccaa	5	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56141530	C	C	56141530	1	2	168	0	1	0	0	0	0	0	0	0	3712	957	33	4		4	COL21A1	6	56141530	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	925437	56141530	114973537	763	137754											
BAI3	577	broad.mit.edu	37	chr6	69703696	69703696	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggggcagcgaatgctgGcaggtgatggaatgtcccag	16	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69703696	A	A	69703696	3	1	168	1	0	0	0	0	1	0	0	0	1305	1203	42	4	1805	4	BAI3	6	69703696	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	13562166	69703696	101411371	764	137755											
BAI3	577	broad.mit.edu	37	chr6	70049262	70049262	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgtgtggtgttgccccttCtggctttgacgtggatgtct	13	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70049262	T	T	70049262	2	4	168	1	0	0	0	0	0	0	0	1	1305	912	32	4		4	BAI3	6	70049262	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	345566	70049262	101065805	765	137756											
COL19A1	1310	broad.mit.edu	37	chr6	70646642	70646642	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatgagaatgtttggaattGaccccatttcctaaagcctc	7	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70646642	C	C	70646642	1	2	168	0	1	0	0	0	0	0	0	0	3708	1305	45	4		4	COL19A1	6	70646642	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	597380	70646642	100468425	766	137757											
COL19A1	1310	broad.mit.edu	37	chr6	70672649	70672649	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtttgaaacataattttTattgtaaaaattgcatgtgt	6	2	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70672649	A	A	70672649	1	1	168	0	1	0	0	0	0	0	0	0	3708	1769	61	5		5	COL19A1	6	70672649	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	26007	70672649	100442418	767	137758											
COL9A1	1297	broad.mit.edu	37	chr6	70926771	70926771	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatttctgccatagctggcAgggcctgggtcacctgaaac	11	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70926771	T	T	70926771	2	4	168	1	0	0	0	0	0	0	0	1	3739	175	7	5		5	COL9A1	6	70926771	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	254122	70926771	100188296	768	137759											
COL9A1	1297	broad.mit.edu	37	chr6	70961820	70961820	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagaacagcaaggaatactCacaggaagcccctggggtcc	11	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70961820	T	T	70961820	1	4	168	0	1	0	0	0	0	0	0	0	3739	841	29	4		4	COL9A1	6	70961820	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	35049	70961820	100153247	769	137760											
B3GAT2	135152	broad.mit.edu	37	chr6	71603888	71603888	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccggtgtaccagccaacaaCtttgccgttttccaccagcg	9	15	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71603888	G	G	71603888	3	3	168	1	0	0	0	0	1	0	0	0	1259	565	20	4	304	4	B3GAT2	6	71603888	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	642068	71603888	99511179	770	137761											
DDX43	55510	broad.mit.edu	37	chr6	74104594	74104594	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtggtgcagagctggaCggcaacgacgtcggacgcgc	17	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74104594	A	A	74104594	1	1	168	0	1	0	0	0	0	0	0	0	4396	551	19	3		3	DDX43	6	74104594	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	2500706	74104594	97010473	771	137762											
DDX43	55510	broad.mit.edu	37	chr6	74121941	74121941	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcccagtgctacatggcctCattcagttcatcgcctcgca	7	15	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74121941	A	A	74121941	3	1	168	1	0	0	0	0	1	0	0	0	4396	826	29	3	1336	3	DDX43	6	74121941	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	17347	74121941	96993126	772	137763											
EEF1A1	1915	broad.mit.edu	37	chr6	74229019	74229019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagtgtacaaagcaagcCttttgggataaagaaaccta	8	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74229019	A	A	74229019	1	1	168	0	1	0	0	0	0	0	0	0	4963	696	24	2		2	EEF1A1	6	74229019	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	107078	74229019	96886048	773	137764											
CD109	135228	broad.mit.edu	37	chr6	74473357	74473357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatgattacatcattgaGttttttgattatactactgt	5	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74473357	T	T	74473357	3	4	168	1	0	0	0	0	1	0	0	0	2993	1020	36	3	1094	3	CD109	6	74473357	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	244338	74473357	96641710	774	137765											
CD109	135228	broad.mit.edu	37	chr6	74528290	74528290	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacataaggtaactgttgacAaaaccactgtgttttgtatt	7	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74528290	T	T	74528290	1	4	168	0	1	0	0	0	0	0	0	0	2993	145	5	5		5	CD109	6	74528290	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	54933	74528290	96586777	775	137766											
MYO6	4646	broad.mit.edu	37	chr6	76542705	76542705	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtatttgagtaggttgatCttttttttccccccttgaga	8	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76542705	G	G	76542705	1	3	168	0	1	0	0	0	0	0	0	0	10175	928	32	4		4	MYO6	6	76542705	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2014415	76542705	94572362	776	137767											
TTK	7272	broad.mit.edu	37	chr6	80750341	80750341	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agttaaccaaatggccaaggGaaccactgaagaaatgaaat	9	7	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80750341	C	C	80750341	3	2	168	1	0	0	0	0	1	0	0	0	16846	1174	41	4	2489	4	TTK	6	80750341	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4207636	80750341	90364726	777	137768											
SYNCRIP	10492	broad.mit.edu	37	chr6	86347031	86347031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctccatacttcctctgtCcagtggtcacatcaagtgtg	8	13	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86347031	A	A	86347031	3	1	168	1	0	0	0	0	1	0	0	0	15563	855	30	3	1526	3	SYNCRIP	6	86347031	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	5596690	86347031	84768036	778	137769											
ORC3L	23595	broad.mit.edu	37	chr6	88331735	88331735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagagatatttgaaggtaGgaatgtgaatgtgtttcagt	13	1	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88331735	T	T	88331735	1	4	168	0	1	0	0	0	0	0	0	0	11357	1015	35	2		2	ORC3L	6	88331735	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1984704	88331735	82783332	779	137770											
GABRR1	2569	broad.mit.edu	37	chr6	89908038	89908038	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggattctgtagcccctgtgGagccatcacttggctgggga	14	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89908038	T	T	89908038	1	4	168	0	1	0	0	0	0	0	0	0	6236	1189	41	3		3	GABRR1	6	89908038	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1576303	89908038	81207029	780	137771											
MDN1	23195	broad.mit.edu	37	chr6	90466040	90466040	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgttcacactcaatcctttCagataatctacaataagaac	3	10	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90466040	T	T	90466040	2	4	168	1	0	0	0	0	0	0	0	1	9508	813	29	4		4	MDN1	6	90466040	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	558002	90466040	80649027	781	137772											
FHL5	9457	broad.mit.edu	37	chr6	97058521	97058521	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttctgtgtagtggctgtaGgaaagatctctgtgaagaac	12	5	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97058521	A	A	97058521	3	1	168	1	0	0	0	0	1	0	0	0	5938	1000	35	4	592	4	FHL5	6	97058521	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	6592481	97058521	74056546	782	137773											
SIM1	6492	broad.mit.edu	37	chr6	100841699	100841699	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcggagaggccgtgtcggTcaagggacttccgccccact	14	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100841699	G	G	100841699	3	3	168	1	0	0	0	0	1	0	0	0	14436	1667	58	5	1074	5	SIM1	6	100841699	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	3783178	100841699	70273368	783	137774											
LAMA4	3910	broad.mit.edu	37	chr6	112462132	112462132	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgttttcccaccctattgaGataaataattttcacttgtt	4	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112462132	T	T	112462132	1	4	168	0	1	0	0	0	0	0	0	0	8680	957	33	3		3	LAMA4	6	112462132	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	11620433	112462132	58652935	784	137775											
ZUFSP	221302	broad.mit.edu	37	chr6	116972825	116972825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttattaagttgagaggccCcctgaggatcaaaaccttcc	9	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116972825	A	A	116972825	3	1	168	1	0	0	0	0	1	0	0	0	18375	623	22	2	526	2	ZUFSP	6	116972825	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4510693	116972825	54142242	785	137776											
RFX6	222546	broad.mit.edu	37	chr6	117252432	117252432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtattaaaatgagtggCatttgcagagaaaagaaaat	11	3	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117252432	A	A	117252432	1	1	168	0	1	0	0	0	0	0	0	0	13375	725	25	3		3	RFX6	6	117252432	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	279607	117252432	53862635	786	137777											
CLVS2	134829	broad.mit.edu	37	chr6	123319104	123319104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacgcttcttgcgggctaGgaagtttcatcactttgagg	11	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123319104	T	T	123319104	3	4	168	1	0	0	0	0	1	0	0	0	3604	1000	35	2	184	2	CLVS2	6	123319104	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	6066672	123319104	47795963	787	137778											
CLVS2	134829	broad.mit.edu	37	chr6	123377080	123377080	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagaacactgctagaccatGaatatgacgatgacagcgag	10	9	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123377080	A	A	123377080	3	1	168	1	0	0	0	0	1	0	0	0	3604	1291	45	4	819	4	CLVS2	6	123377080	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	57976	123377080	47737987	788	137779											
TRDN	10345	broad.mit.edu	37	chr6	123786080	123786080	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtgatgccggagtgggtCtggaagcttgttctgtcggt	17	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123786080	T	T	123786080	3	4	168	1	0	0	0	0	1	0	0	0	16592	913	32	4	1415	4	TRDN	6	123786080	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	409000	123786080	47328987	789	137780											
NKAIN2	154215	broad.mit.edu	37	chr6	124979567	124979567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccgctccttctagtgcCtctggggttgttttatttct	8	12	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124979567	A	A	124979567	1	1	168	0	1	0	0	0	0	0	0	0	10531	696	24	2		2	NKAIN2	6	124979567	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1193487	124979567	46135500	790	137781											
TMEM200A	114801	broad.mit.edu	37	chr6	130762817	130762817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaacaacggaaacatcCaagttggcctaggttggatc	12	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130762817	A	A	130762817	3	1	168	1	0	0	0	0	1	0	0	0	16246	594	21	2	1252	2	TMEM200A	6	130762817	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	5783250	130762817	40352250	791	137782											
TMEM200A	114801	broad.mit.edu	37	chr6	130762884	130762884	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctagagaacaaagaagacccGatggataggttgcttgtgcc	12	8	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130762884	T	T	130762884	2	4	168	1	0	0	0	0	0	0	0	1	16246	1045	37	3		3	TMEM200A	6	130762884	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	67	130762884	40352183	792	137783											
MED23	9439	broad.mit.edu	37	chr6	131903928	131903928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatatgctttactgaccaaCtctatgagagaaaattaaac	6	7	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131903928	A	A	131903928	1	1	168	0	1	0	0	0	0	0	0	0	9534	580	20	3		3	MED23	6	131903928	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1141044	131903928	39211139	793	137784											
TAAR6	319100	broad.mit.edu	37	chr6	132892374	132892374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcttattataactcagCcatgaatcctttgatttatg	7	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132892374	A	A	132892374	3	1	168	1	0	0	0	0	1	0	0	0	15611	739	26	3	916	3	TAAR6	6	132892374	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	988446	132892374	38222693	794	137785											
TAAR2	9287	broad.mit.edu	37	chr6	132938716	132938716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccataaacaaggtggtcCcccatagcttgttgaacatc	8	12	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132938716	A	A	132938716	3	1	168	1	0	0	0	0	1	0	0	0	15609	623	22	2	430	2	TAAR2	6	132938716	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	46342	132938716	38176351	795	137786											
SLC2A12	154091	broad.mit.edu	37	chr6	134350242	134350242	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgtatctgagagtgctcTtaaccttccaagaaccttgc	8	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134350242	C	C	134350242	3	2	168	1	0	0	0	0	1	0	0	0	14655	1617	56	5	1148	5	SLC2A12	6	134350242	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1411526	134350242	36764825	796	137787											
PDE7B	27115	broad.mit.edu	37	chr6	136494944	136494944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttctagaatatgtctGtgctggagaatcatcactgg	9	7	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136494944	T	T	136494944	3	4	168	1	0	0	0	0	1	0	0	0	11746	1377	48	3	755	3	PDE7B	6	136494944	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2144702	136494944	34620123	797	137788											
IL22RA2	116379	broad.mit.edu	37	chr6	137468974	137468974	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttggagcatggagaattAccaacaaagagccattgact	9	7	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137468974	C	C	137468974	3	2	168	1	0	0	0	0	1	0	0	0	7744	391	14	5	272	5	IL22RA2	6	137468974	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	974030	137468974	33646093	798	137789											
CCDC28A	25901	broad.mit.edu	37	chr6	139106455	139106455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctctatggggagttagaGgaacttcctgaggataagag	15	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139106455	T	T	139106455	3	4	168	1	0	0	0	0	1	0	0	0	2829	991	35	2	698	2	CCDC28A	6	139106455	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1637481	139106455	32008612	799	137790											
ECT2L	345930	broad.mit.edu	37	chr6	139167684	139167684	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttactccatagaagcaataTttctggaagccattcctacc	5	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139167684	C	C	139167684	3	2	168	1	0	0	0	0	1	0	0	0	4942	1493	52	5	795	5	ECT2L	6	139167684	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	61229	139167684	31947383	800	137791											
GPR126	57211	broad.mit.edu	37	chr6	142711495	142711495	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgggtaagtgagcttgtAacttttcttttttaaaaaaa	8	3	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142711495	T	T	142711495	1	4	168	0	1	0	0	0	0	0	0	0	6705	377	13	5		5	GPR126	6	142711495	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	3543811	142711495	28403572	801	137792											
SHPRH	257218	broad.mit.edu	37	chr6	146256253	146256253	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaatgcctttccactggaGaaaagtggagccagtgtatt	11	7	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146256253	A	A	146256253	3	1	168	1	0	0	0	0	1	0	0	0	14404	942	33	4	2387	4	SHPRH	6	146256253	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3544758	146256253	24858814	802	137793											
GRM1	2911	broad.mit.edu	37	chr6	146480657	146480657	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtggtggtctgcttctgtGaaggcatgacagtgcgagga	17	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146480657	A	A	146480657	3	1	168	1	0	0	0	0	1	0	0	0	6862	1291	45	4	880	4	GRM1	6	146480657	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	224404	146480657	24634410	803	137794											
LATS1	9113	broad.mit.edu	37	chr6	150001319	150001319	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagacgaactacccattcaTtgtcagcttcagccaggata	7	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150001319	C	C	150001319	3	2	168	1	0	0	0	0	1	0	0	0	8718	1493	52	5	1123	5	LATS1	6	150001319	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	3520662	150001319	21113748	804	137795											
PPP1R14C	81706	broad.mit.edu	37	chr6	150538010	150538010	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggtaagcaaatcacttttCctaaatgccatgtttgaact	7	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150538010	T	T	150538010	1	4	168	0	1	0	0	0	0	0	0	0	12462	870	30	4		4	PPP1R14C	6	150538010	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	536691	150538010	20577057	805	137796											
PLEKHG1	57480	broad.mit.edu	37	chr6	151107479	151107479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatacaaaatgtactcacCcagaagactacaatctaata	3	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151107479	A	A	151107479	1	1	168	0	1	0	0	0	0	0	0	0	12163	638	22	2		2	PLEKHG1	6	151107479	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	569469	151107479	20007588	806	137797											
PLEKHG1	57480	broad.mit.edu	37	chr6	151121977	151121977	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcttgaaaccagttcagcGgattctcaagtatcatctcc	6	12	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151121977	C	C	151121977	3	2	168	1	0	0	0	0	1	0	0	0	12163	1116	39	4	770	4	PLEKHG1	6	151121977	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	14498	151121977	19993090	807	137798											
SYNE1	23345	broad.mit.edu	37	chr6	152454387	152454387	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagtaagaaatgctacaCgatgatgtctgtttattgct	8	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152454387	T	T	152454387	1	4	168	0	1	0	0	0	0	0	0	0	15564	551	19	4		4	SYNE1	6	152454387	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1332410	152454387	18660680	808	137799											
ARID1B	57492	broad.mit.edu	37	chr6	157488201	157488201	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtttccccggcatgaaccaGagtggacttatggcttccag	11	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157488201	C	C	157488201	3	2	168	1	0	0	0	0	1	0	0	0	916	933	33	4	2945	4	ARID1B	6	157488201	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5033814	157488201	13626866	809	137800											
TAGAP	117289	broad.mit.edu	37	chr6	159457709	159457709	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagtgcccgcgggagcaccGaacccggggccaagttcttg	14	15	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159457709	T	T	159457709	4	4	168	1	0	0	0	0	0	1	0	0	15656	1059	37	3	853	3	TAGAP	6	159457709	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1969508	159457709	11657358	810	137801											
LPA	4018	broad.mit.edu	37	chr6	161005972	161005972	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacattttgctacaaactctGagtctatgagaaatttggac	8	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161005972	T	T	161005972	1	4	168	0	1	0	0	0	0	0	0	0	8990	1305	45	3		3	LPA	6	161005972	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1548263	161005972	10109095	811	137802											
PLG	5340	broad.mit.edu	37	chr6	161152034	161152034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagagggtgctgggtgcccCtgaatattctcccacctctt	11	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161152034	A	A	161152034	1	1	168	0	1	0	0	0	0	0	0	0	12181	696	24	2		2	PLG	6	161152034	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	146062	161152034	9963033	812	137803											
AGPAT4	56895	broad.mit.edu	37	chr6	161570225	161570225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagttcgacttacctaacaTacaaatctgcatggtatttc	5	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161570225	A	A	161570225	3	1	168	1	0	0	0	0	1	0	0	0	389	1406	49	5	391	5	AGPAT4	6	161570225	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	418191	161570225	9544842	813	137804											
AGPAT4	56895	broad.mit.edu	37	chr6	161653134	161653134	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttgttaatgggccagaGgaggagagtgaagagctgaa	16	5	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161653134	A	A	161653134	3	1	168	1	0	0	0	0	1	0	0	0	389	1000	35	4	1056	4	AGPAT4	6	161653134	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	82909	161653134	9461933	814	137805											
PARK2	5071	broad.mit.edu	37	chr6	162989945	162989945	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatcaggaaggacatggaTgatgcttacgtgaacaaggt	12	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162989945	A	A	162989945	1	1	168	0	1	0	0	0	0	0	0	0	11543	1479	51	5		5	PARK2	6	162989945	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1336811	162989945	8125122	815	137806											
C6orf118	168090	broad.mit.edu	37	chr6	165712899	165712899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagctatggataagcagGctctattcaggctctttgtg	11	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165712899	T	T	165712899	1	4	168	0	1	0	0	0	0	0	0	0	2346	1218	42	3		3	C6orf118	6	165712899	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2722954	165712899	5402168	816	137807											
C6orf118	168090	broad.mit.edu	37	chr6	165715075	165715075	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacctgctgcagctttctctCgtggcccgcggccgccttgc	11	18	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165715075	G	G	165715075	3	3	168	1	0	0	0	0	1	0	0	0	2346	893	31	4	705	4	C6orf118	6	165715075	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2176	165715075	5399992	817	137808											
PDE10A	10846	broad.mit.edu	37	chr6	165756861	165756861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcactatctatgtcaatAtaagaatcaaggacatacct	4	10	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165756861	G	G	165756861	1	3	168	0	1	0	0	0	0	0	0	0	11724	464	16	5		5	PDE10A	6	165756861	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	41786	165756861	5358206	818	137809											
WDR27	253769	broad.mit.edu	37	chr6	170059369	170059369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagacgaaacgtgcatcCgcacacgtatcctaacagct	8	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170059369	A	A	170059369	1	1	168	0	1	0	0	0	0	0	0	0	17411	667	23	1		1	WDR27	6	170059369	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4302508	170059369	1055698	819	137810											
MICALL2	79778	broad.mit.edu	37	chr7	1476417	1476417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagtccacgatgtcactgCggtcgttcacggtgctcacg	13	13	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1476417	A	A	1476417	3	1	168	1	0	0	0	0	1	0	0	0	9667	768	27	3	174	3	MICALL2	7	1476417	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08		1476417	157662246	820	137811											
INTS1	26173	broad.mit.edu	37	chr7	1538937	1538937	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggctcagcttctcctccgCgatcagcaactccgtctggc	11	16	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1538937	G	G	1538937	3	3	168	1	0	0	0	0	1	0	0	0	7845	768	27	4	5836	4	INTS1	7	1538937	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	62520	1538937	157599726	821	137812											
EIF3B	8662	broad.mit.edu	37	chr7	2406159	2406159	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcacttttgtttttcttaGgtggagccatgatggcaaat	11	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2406159	A	A	2406159	5	1	168	1	0	0	0	0	0	0	1	0	5053	1014	35	4	1319	4	EIF3B	7	2406159	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	867222	2406159	156732504	822	137813											
SDK1	221935	broad.mit.edu	37	chr7	4285325	4285325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtccccaccccggcctaGccccggcggcctgcactact	10	20	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4285325	T	T	4285325	3	4	168	1	0	0	0	0	1	0	0	0	14081	971	34	3	6443	3	SDK1	7	4285325	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1879166	4285325	154853338	823	137814											
RADIL	55698	broad.mit.edu	37	chr7	4839130	4839130	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagctctgaaatccatgccaGaggtgggggtgggcaggagg	18	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4839130	C	C	4839130	1	2	168	0	1	0	0	0	0	0	0	0	13105	957	33	4		4	RADIL	7	4839130	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	553805	4839130	154299533	824	137815											
RADIL	55698	broad.mit.edu	37	chr7	4839263	4839263	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcatgcggtgggggtacctCaggtagccaaggcccaggag	17	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4839263	A	A	4839263	2	1	168	1	0	0	0	0	0	0	0	1	13105	813	29	3		3	RADIL	7	4839263	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	133	4839263	154299400	825	137816											
NXPH1	30010	broad.mit.edu	37	chr7	8791192	8791192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatatgaaaaggttgacaaGgctaccaagaacacactctg	9	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8791192	T	T	8791192	3	4	168	1	0	0	0	0	1	0	0	0	10885	991	35	2	615	2	NXPH1	7	8791192	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3951929	8791192	150347471	826	137817											
PHF14	9678	broad.mit.edu	37	chr7	11068308	11068308	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctgttactttgttgtagGagtgtagcttttgtgaagac	11	4	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11068308	T	T	11068308	4	4	168	1	0	0	0	0	0	1	0	0	11920	1188	41	3	1344	3	PHF14	7	11068308	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2277116	11068308	148070355	827	137818											
THSD7A	221981	broad.mit.edu	37	chr7	11485953	11485953	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttctttttactttttccTgtggaagagaaacaatcagg	7	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11485953	C	C	11485953	5	2	168	1	0	0	0	0	0	0	1	0	16002	1594	55	5	2234	5	THSD7A	7	11485953	Splice_Site	SNP	T	TCGA-50-6590-01A-12D-1855-08	417645	11485953	147652710	828	137819											
DGKB	1607	broad.mit.edu	37	chr7	14378342	14378342	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtactccatcacactgatcGgtaaaaagaaagaaacagaa	7	8	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14378342	C	C	14378342	1	2	168	0	1	0	0	0	0	0	0	0	4506	1131	39	4		4	DGKB	7	14378342	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2892389	14378342	144760321	829	137820											
DGKB	1607	broad.mit.edu	37	chr7	14880857	14880857	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgggaaaattccgaagggCtgaggtgggcccatttttcc	14	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14880857	G	G	14880857	3	3	168	1	0	0	0	0	1	0	0	0	4506	797	28	4	2497	4	DGKB	7	14880857	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	502515	14880857	144257806	830	137821											
HDAC9	9734	broad.mit.edu	37	chr7	18633405	18633405	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtgaggctatggtttgTatacactaaggagaaagagc	12	4	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18633405	C	C	18633405	1	2	168	0	1	0	0	0	0	0	0	0	7081	1653	57	5		5	HDAC9	7	18633405	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	3752548	18633405	140505258	831	137822											
HDAC9	9734	broad.mit.edu	37	chr7	18869045	18869045	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataatggttttcctggatgAtttgctttcttatttctctg	7	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18869045	C	C	18869045	1	2	168	0	1	0	0	0	0	0	0	0	7081	348	12	5		5	HDAC9	7	18869045	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	235640	18869045	140269618	832	137823											
MACC1	346389	broad.mit.edu	37	chr7	20198880	20198880	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaattccaattgaggtggtTttgtggatataatcccaaat	8	5	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20198880	G	G	20198880	3	3	168	1	0	0	0	0	1	0	0	0	9231	1838	64	5	1466	5	MACC1	7	20198880	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1329835	20198880	138939783	833	137824											
ITGB8	3696	broad.mit.edu	37	chr7	20431053	20431053	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcactaggccaactttcaGagaaattaatagacaacaac	5	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20431053	T	T	20431053	4	4	168	1	0	0	0	0	0	1	0	0	7971	943	33	3	1014	3	ITGB8	7	20431053	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	232173	20431053	138707610	834	137825											
ABCB5	340273	broad.mit.edu	37	chr7	20738227	20738227	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttaaagaaagtatgacctGagagaacaagcttgtatcag	9	5	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20738227	C	C	20738227	1	2	168	0	1	0	0	0	0	0	0	0	44	1305	45	4		4	ABCB5	7	20738227	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	307174	20738227	138400436	835	137826											
SP4	6671	broad.mit.edu	37	chr7	21516849	21516849	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaggccagcagacttctGatcaagaggtacaacctggc	11	11	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21516849	A	A	21516849	3	1	168	1	0	0	0	0	1	0	0	0	15080	1290	45	4	1845	4	SP4	7	21516849	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	778622	21516849	137621814	836	137827											
DNAH11	8701	broad.mit.edu	37	chr7	21628134	21628134	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatatcaacttgcagattgAatgtggtcatgtagttctta	8	5	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21628134	T	T	21628134	3	4	168	1	0	0	0	0	1	0	0	0	4639	246	9	5	1895	5	DNAH11	7	21628134	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	111285	21628134	137510529	837	137828											
DNAH11	8701	broad.mit.edu	37	chr7	21789412	21789412	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgattaatgacttgctGgcatcaggtgattaaaccaa	10	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21789412	T	T	21789412	2	4	168	1	0	0	0	0	0	0	0	1	4639	1335	47	2		2	DNAH11	7	21789412	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	161278	21789412	137349251	838	137829											
RAPGEF5	9771	broad.mit.edu	37	chr7	22184600	22184600	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcataagaaagaaagaaaGaagaacaatgtactctctca	6	7	3	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22184600	C	C	22184600	1	2	168	0	1	0	0	0	0	0	0	0	13155	957	33	4		4	RAPGEF5	7	22184600	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	395188	22184600	136954063	839	137830											
KLHL7	55975	broad.mit.edu	37	chr7	23145690	23145690	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcagcaagaagaagaccgaGaagaaacttgctgctcggga	13	8	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23145690	C	C	23145690	3	2	168	1	0	0	0	0	1	0	0	0	8465	933	33	4	47	4	KLHL7	7	23145690	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	961090	23145690	135992973	840	137831											
CCDC126	90693	broad.mit.edu	37	chr7	23682515	23682515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacaaaaatgaagagctctAttaatgttaattttattctg	5	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23682515	G	G	23682515	1	3	168	0	1	0	0	0	0	0	0	0	2788	464	16	5		5	CCDC126	7	23682515	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	536825	23682515	135456148	841	137832											
OSBPL3	26031	broad.mit.edu	37	chr7	24892206	24892206	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcagctgcttcagtttctCtctctccgctgacatgatat	6	13	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24892206	T	T	24892206	3	4	168	1	0	0	0	0	1	0	0	0	11373	922	32	4	1640	4	OSBPL3	7	24892206	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1209691	24892206	134246457	842	137833											
INMT	11185	broad.mit.edu	37	chr7	30791821	30791821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaagcacttcctgcccaggGactacttggctacttactac	8	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30791821	T	T	30791821	3	4	168	1	0	0	0	0	1	0	0	0	7815	1174	41	3	57	3	INMT	7	30791821	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5899615	30791821	128346842	843	137834											
C7orf16	10842	broad.mit.edu	37	chr7	31746992	31746992	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttctgctctcatttttgtCatcgtctgacttgaagattc	7	9	4	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31746992	T	T	31746992	1	4	168	0	1	0	0	0	0	0	0	0	2403	841	29	4		4	C7orf16	7	31746992	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	955171	31746992	127391671	844	137835											
PDE1C	5137	broad.mit.edu	37	chr7	31890348	31890348	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagatctccagctccgtcAgccagttctgaaaggagatt	9	11	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31890348	T	T	31890348	3	4	168	1	0	0	0	0	1	0	0	0	11729	188	7	5	1186	5	PDE1C	7	31890348	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	143356	31890348	127248315	845	137836											
PDE1C	5137	broad.mit.edu	37	chr7	31918557	31918557	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttccagttattggaaaCgtgttgctttggctgcttta	10	7	0	0	rs137899559	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31918557	A	A	31918557	1	1	168	0	1	0	0	0	0	0	0	0	11729	551	19	3		3	PDE1C	7	31918557	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	28209	31918557	127220106	846	137837											
AOAH	313	broad.mit.edu	37	chr7	36572086	36572086	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatttttcatgcagcattgCtcttgaagaatgcctgtgct	9	8	2	3	rs140524230	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36572086	G	G	36572086	1	3	168	0	1	0	0	0	0	0	0	0	728	812	28	4		4	AOAH	7	36572086	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4653529	36572086	122566577	847	137838											
AOAH	313	broad.mit.edu	37	chr7	36616055	36616055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaagggcaatggcattGgaagggagaccgttcatttt	13	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36616055	T	T	36616055	1	4	168	0	1	0	0	0	0	0	0	0	728	1363	47	2		2	AOAH	7	36616055	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	43969	36616055	122522608	848	137839											
AOAH	313	broad.mit.edu	37	chr7	36657948	36657948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactccatcttttggatcgaCaccctttaaaaaagaaacga	5	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36657948	A	A	36657948	3	1	168	1	0	0	0	0	1	0	0	0	728	478	17	3	1410	3	AOAH	7	36657948	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	41893	36657948	122480715	849	137840											
AMPH	273	broad.mit.edu	37	chr7	38424457	38424457	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagttctctggaaagaggcCtttgtaggtggcaaggtctc	14	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38424457	G	G	38424457	3	3	168	1	0	0	0	0	1	0	0	0	588	681	24	4	41	4	AMPH	7	38424457	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1766509	38424457	120714206	850	137841											
POU6F2	11281	broad.mit.edu	37	chr7	39504268	39504268	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggagcccttaacagactctCtggaagaaaactcctaaaga	8	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39504268	G	G	39504268	3	3	168	1	0	0	0	0	1	0	0	0	12381	912	32	4	2097	4	POU6F2	7	39504268	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1079811	39504268	119634395	851	137842											
CDK13	8621	broad.mit.edu	37	chr7	40132365	40132365	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaattatgacagttctaattAatataattttgtctttagta	5	3	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40132365	C	C	40132365	1	2	168	0	1	0	0	0	0	0	0	0	3159	377	13	5		5	CDK13	7	40132365	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	628097	40132365	119006298	852	137843											
INHBA	3624	broad.mit.edu	37	chr7	41730010	41730010	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctgctgctggaagaggcgGatggtgactttggtcctggt	16	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41730010	T	T	41730010	2	4	168	1	0	0	0	0	0	0	0	1	7811	1164	41	3		3	INHBA	7	41730010	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1597645	41730010	117408653	853	137844											
ZMIZ2	83637	broad.mit.edu	37	chr7	44802952	44802952	+	Frame_Shift_Del	DEL	C	-	-													atcaaggtgtccctgaagtgCcccatcaccttccgcaggat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44802952	-	-	44802952	7	5	168	1	0	1	0	1	0	0	0	0	17823	747	26	0	1846	0	ZMIZ2	7	44802952	Frame_Shift_Del	DEL	C	TCGA-50-6590-01A-12D-1855-08	3072942	44802952	114335711	854	137845											
MYO1G	64005	broad.mit.edu	37	chr7	45014658	45014658	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgatgggctaggtggggttGagtgggcagagagggggaat	22	3	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45014658	T	T	45014658	1	4	168	0	1	0	0	0	0	0	0	0	10168	1305	45	3		3	MYO1G	7	45014658	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	211706	45014658	114124005	855	137846											
MYO1G	64005	broad.mit.edu	37	chr7	45015002	45015004	+	Intron	TNP	GTC	AAA	AAA													cagccctcctaagctgcaccGtcgggatgggtaccttccca					rs149282135	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAA	45015004	AAA	AAA	45015002	1	1	168	0	1	0	0	0	0	0	0	0	10168	1160	40	4		4	MYO1G	7	45015002	Intron	TNP	GTC	TCGA-50-6590-01A-12D-1855-08	344	45015002	114123661	856	137847											
CCM2	83605	broad.mit.edu	37	chr7	45115296	45115296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagctgtggccctgtcaGggggctttgagccctgagag	18	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45115296	T	T	45115296	1	4	168	0	1	0	0	0	0	0	0	0	2938	1015	35	2		2	CCM2	7	45115296	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	100294	45115296	114023367	857	137848											
TBRG4	9238	broad.mit.edu	37	chr7	45141246	45141246	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggatgagaacatgttgGgggacatccctcagaaaccc	13	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45141246	A	A	45141246	1	1	168	0	1	0	0	0	0	0	0	0	15771	1247	43	4		4	TBRG4	7	45141246	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	25950	45141246	113997417	858	137849											
TNS3	64759	broad.mit.edu	37	chr7	47408169	47408169	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactggtcgatgtccagggTgggcgagcctggggaggggc	22	8	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47408169	A	A	47408169	3	1	168	1	0	0	0	0	1	0	0	0	16467	1696	59	5	2323	5	TNS3	7	47408169	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	2266923	47408169	111730494	859	137850											
ABCA13	154664	broad.mit.edu	37	chr7	48266979	48266979	+	Frame_Shift_Del	DEL	G	-	-													caagccatgatcatgtggaaGatggcatggatgttgcagtg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48266979	-	-	48266979	7	5	168	1	0	1	0	1	0	0	0	0	31	942	33	0	440	0	ABCA13	7	48266979	Frame_Shift_Del	DEL	G	TCGA-50-6590-01A-12D-1855-08	858810	48266979	110871684	860	137851											
ABCA13	154664	broad.mit.edu	37	chr7	48428735	48428735	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgagggccacaaggctgtgGtccaagacctcagcctgacc	12	13	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48428735	C	C	48428735	3	2	168	1	0	0	0	0	1	0	0	0	31	1261	44	4	11547	4	ABCA13	7	48428735	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	161756	48428735	110709928	861	137852											
IKZF1	10320	broad.mit.edu	37	chr7	50459490	50459490	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcaagataggatcagagaGatctctcgtgctggacagac	13	8	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50459490	T	T	50459490	3	4	168	1	0	0	0	0	1	0	0	0	7684	942	33	3	801	3	IKZF1	7	50459490	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2030755	50459490	108679173	862	137853											
DDC	1644	broad.mit.edu	37	chr7	50547537	50547537	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccagtctaaaggctccCgttaagtctgttctcttttt	9	10	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50547537	A	A	50547537	2	1	168	1	0	0	0	0	0	0	0	1	4358	639	23	1		1	DDC	7	50547537	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	88047	50547537	108591126	863	137854											
SEPT14	346288	broad.mit.edu	37	chr7	55914085	55914085	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacataatatggctaagatGagaatcactgtaaacatgaa	7	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55914085	C	C	55914085	1	2	168	0	1	0	0	0	0	0	0	0	14176	1305	45	4		4	SEPT14	7	55914085	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	5366548	55914085	103224578	864	137855											
ZNF479	90827	broad.mit.edu	37	chr7	57188263	57188263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtatgaattctcttgtGgttagtaagtgctgaggagc	12	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57188263	T	T	57188263	3	4	168	1	0	0	0	0	1	0	0	0	18060	1348	47	2	719	2	ZNF479	7	57188263	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1274178	57188263	101950400	865	137856											
ZNF679	168417	broad.mit.edu	37	chr7	63709545	63709545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagaaatggtgagtgctgGgtctgtcaccgtgagagagg	17	7	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63709545	T	T	63709545	1	4	168	0	1	0	0	0	0	0	0	0	18213	1247	43	2		2	ZNF679	7	63709545	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6521282	63709545	95429118	866	137857											
ZNF107	51427	broad.mit.edu	37	chr7	64168595	64168595	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagaaaccttaccaatGtgcagaatgtggcaaagcct	12	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64168595	T	T	64168595	3	4	168	1	0	0	0	0	1	0	0	0	17841	1377	48	3	1919	3	ZNF107	7	64168595	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	459050	64168595	94970068	867	137858											
STAG3L4	64940	broad.mit.edu	37	chr7	66770984	66770984	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttactagtctttggtagAtgagtggctggatagctaca	11	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66770984	T	T	66770984	3	4	168	1	0	0	0	0	1	0	0	0	15365	333	12	5	3	5	STAG3L4	7	66770984	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2602389	66770984	92367679	868	137859											
AUTS2	26053	broad.mit.edu	37	chr7	69599543	69599543	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagctccttccagcttgGgaacaggctacttcgtaagt	10	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69599543	T	T	69599543	4	4	168	1	0	0	0	0	0	1	0	0	1230	1233	43	2	660	2	AUTS2	7	69599543	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2828559	69599543	89539120	869	137860											
CALN1	83698	broad.mit.edu	37	chr7	71743592	71743592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtggccaaagtccagggCtttcaattgagcttcacaat	11	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71743592	A	A	71743592	1	1	168	0	1	0	0	0	0	0	0	0	2617	812	28	3		3	CALN1	7	71743592	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2144049	71743592	87395071	870	137861											
FKBP6	8468	broad.mit.edu	37	chr7	72712105	72712105	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgctgtcttctccttcgGtgcagccaccagctctggct	9	16	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72712105	A	A	72712105	1	1	168	0	1	0	0	0	0	0	0	0	5969	1276	44	4		4	FKBP6	7	72712105	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	968513	72712105	86426558	871	137862											
SRRM3	222183	broad.mit.edu	37	chr7	75894765	75894765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctctcctcccactacaGtgattccagatctcccagca	4	19	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75894765	T	T	75894765	3	4	168	1	0	0	0	0	1	0	0	0	15288	1029	36	3	843	3	SRRM3	7	75894765	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3182660	75894765	83243898	872	137863											
ZP3	7784	broad.mit.edu	37	chr7	76054473	76054473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctttttggcaccgggaaGctcatcagggctgctgacct	12	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76054473	T	T	76054473	3	4	168	1	0	0	0	0	1	0	0	0	18346	962	34	3	194	3	ZP3	7	76054473	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	159708	76054473	83084190	873	137864											
DTX2	113878	broad.mit.edu	37	chr7	76111985	76111985	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggggcaaccagctcgtGgacttggcccccctggggta	15	14	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76111985	T	T	76111985	2	4	168	1	0	0	0	0	0	0	0	1	4834	1335	47	2		2	DTX2	7	76111985	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	57512	76111985	83026678	874	137865											
PHTF2	57157	broad.mit.edu	37	chr7	77567233	77567233	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agataattactggaatattaTattagtaaccttctgacctc	5	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77567233	C	C	77567233	1	2	168	0	1	0	0	0	0	0	0	0	11958	1421	49	5		5	PHTF2	7	77567233	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1455248	77567233	81571430	875	137866											
MAGI2	9863	broad.mit.edu	37	chr7	77764405	77764405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcttcacgatgtcagcGtgaggcatgttgatgataga	13	6	2	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77764405	T	T	77764405	3	4	168	1	0	0	0	0	1	0	0	0	9283	1136	40	3	1427	3	MAGI2	7	77764405	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	197172	77764405	81374258	876	137867											
GNAT3	346562	broad.mit.edu	37	chr7	80091554	80091554	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttttttgttgaggaacagGacaatggaggttgttgaaaa	12	3	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80091554	T	T	80091554	2	4	168	1	0	0	0	0	0	0	0	1	6577	1161	41	3		3	GNAT3	7	80091554	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2327149	80091554	79047109	877	137868											
HGF	3082	broad.mit.edu	37	chr7	81339449	81339449	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggatatgcatgacttgcatCtattaataattacctgtatc	6	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81339449	G	G	81339449	1	3	168	0	1	0	0	0	0	0	0	0	7152	928	32	4		4	HGF	7	81339449	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1247895	81339449	77799214	878	137869											
CACNA2D1	781	broad.mit.edu	37	chr7	81641406	81641406	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagagacatcatctagaaaGaagtagaaatcatctgtgtg	9	6	4	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81641406	A	A	81641406	1	1	168	0	1	0	0	0	0	0	0	0	2574	957	33	4		4	CACNA2D1	7	81641406	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	301957	81641406	77497257	879	137870											
PCLO	27445	broad.mit.edu	37	chr7	82581843	82581843	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccactaggctttctgtgCctgtagtgtaacttgcacta	8	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82581843	G	G	82581843	3	3	168	1	0	0	0	0	1	0	0	0	11677	739	26	4	7103	4	PCLO	7	82581843	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	940437	82581843	76556820	880	137871											
PCLO	27445	broad.mit.edu	37	chr7	82764747	82764747	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaagggttggttgtttcaCtagtggtggtggctttttag	15	3	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82764747	G	G	82764747	3	3	168	1	0	0	0	0	1	0	0	0	11677	565	20	4	13418	4	PCLO	7	82764747	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	182904	82764747	76373916	881	137872											
SEMA3E	9723	broad.mit.edu	37	chr7	83029608	83029608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattctttttgctttacacCcaaagagaaaatttataatc	3	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83029608	A	A	83029608	1	1	168	0	1	0	0	0	0	0	0	0	14141	638	22	2		2	SEMA3E	7	83029608	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	264861	83029608	76109055	882	137873											
SEMA3A	10371	broad.mit.edu	37	chr7	83606525	83606525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcgtctgaagcaattaCatttaaaaggtgttattgta	9	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83606525	T	T	83606525	1	4	168	0	1	0	0	0	0	0	0	0	14137	493	17	4		4	SEMA3A	7	83606525	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	576917	83606525	75532138	883	137874											
SEMA3D	223117	broad.mit.edu	37	chr7	84694730	84694730	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaaaagtaaacaaaaaaaAatcacaaaccattgagccag	4	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84694730	G	G	84694730	1	3	168	0	1	0	0	0	0	0	0	0	14140	29	1	5		5	SEMA3D	7	84694730	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1088205	84694730	74443933	884	137875											
SEMA3D	223117	broad.mit.edu	37	chr7	84751139	84751139	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacatggtcatgcttagcatCatcaaagcaggaaaaaggtg	10	7	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84751139	T	T	84751139	3	4	168	1	0	0	0	0	1	0	0	0	14140	826	29	4	2332	4	SEMA3D	7	84751139	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	56409	84751139	74387524	885	137876											
ABCB4	5244	broad.mit.edu	37	chr7	87035567	87035567	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattgtttgggggataaaaAgtagtctcttctgatttcag	10	4	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87035567	C	C	87035567	1	2	168	0	1	0	0	0	0	0	0	0	43	87	3	5		5	ABCB4	7	87035567	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	2284428	87035567	72103096	886	137877											
ADAM22	53616	broad.mit.edu	37	chr7	87746060	87746060	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttgcttgtgtcatttcagGaggatttccattttcattca	8	7	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87746060	T	T	87746060	4	4	168	1	0	0	0	0	0	1	0	0	244	1188	41	3	564	3	ADAM22	7	87746060	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	710493	87746060	71392603	887	137878											
ZNF804B	219578	broad.mit.edu	37	chr7	88956801	88956801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaatggtaagaattaaaGgtgtctgggatgcttcaaaa	11	4	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88956801	T	T	88956801	1	4	168	0	1	0	0	0	0	0	0	0	18300	1015	35	2		2	ZNF804B	7	88956801	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1210741	88956801	70181862	888	137879											
ZNF804B	219578	broad.mit.edu	37	chr7	88962752	88962752	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcaaggaattttcccCattaagaatggcagaaaggt	9	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88962752	A	A	88962752	2	1	168	1	0	0	0	0	0	0	0	1	18300	581	21	2		2	ZNF804B	7	88962752	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	5951	88962752	70175911	889	137880											
ZNF804B	219578	broad.mit.edu	37	chr7	88965181	88965181	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggctccttcgcaagtccCatgcacaattcaacttgcac	7	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88965181	T	T	88965181	3	4	168	1	0	0	0	0	1	0	0	0	18300	594	21	4	2899	4	ZNF804B	7	88965181	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2429	88965181	70173482	890	137881											
AKAP9	10142	broad.mit.edu	37	chr7	91725996	91725996	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaaatttgattttctcGtaccaggatctgaagttttc	6	7	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91725996	C	C	91725996	1	2	168	0	1	0	0	0	0	0	0	0	459	1160	40	4		4	AKAP9	7	91725996	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2760815	91725996	67412667	891	137882											
SAMD9	54809	broad.mit.edu	37	chr7	92732174	92732174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaatgaatgcatttggGttgaaccgatggatactttc	11	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92732174	T	T	92732174	3	4	168	1	0	0	0	0	1	0	0	0	13937	1252	44	3	1536	3	SAMD9	7	92732174	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1006178	92732174	66406489	892	137883											
SAMD9L	219285	broad.mit.edu	37	chr7	92764151	92764151	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatactcttcttcagcctcTtttctagatgctaccagtga	5	13	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92764151	C	C	92764151	2	2	168	1	0	0	0	0	0	0	0	1	13938	1606	56	5		5	SAMD9L	7	92764151	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	31977	92764151	66374512	893	137884											
GNGT1	2792	broad.mit.edu	37	chr7	93536082	93536082	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagtaatcaatattgaggaCctgacagaaaaggacaaatt	8	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93536082	G	G	93536082	3	3	168	1	0	0	0	0	1	0	0	0	6597	506	18	4	26	4	GNGT1	7	93536082	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	771931	93536082	65602581	894	137885											
COL1A2	1278	broad.mit.edu	37	chr7	94056487	94056487	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agctcacatgtacctggtgtCtgtcttccttagggccctgc	10	13	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94056487	T	T	94056487	1	4	168	0	1	0	0	0	0	0	0	0	3710	928	32	4		4	COL1A2	7	94056487	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	520405	94056487	65082176	895	137886											
PEG10	23089	broad.mit.edu	37	chr7	94293471	94293471	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggattggaacgagcctgcGctgattgaccagtaccacga	12	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94293471	T	T	94293471	2	4	168	1	0	0	0	0	0	0	0	1	11813	1087	38	3		3	PEG10	7	94293471	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	236984	94293471	64845192	896	137887											
DLX5	1749	broad.mit.edu	37	chr7	96650109	96650109	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagcccggcggcggcaggTgggaattgattgagctggct	19	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96650109	A	A	96650109	3	1	168	1	0	0	0	0	1	0	0	0	4614	1696	59	5	64	5	DLX5	7	96650109	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	2356638	96650109	62488554	897	137888											
TRRAP	8295	broad.mit.edu	37	chr7	98574467	98574467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaataaatactcctccCaaatgatttcaaatgacagc	3	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98574467	A	A	98574467	1	1	168	0	1	0	0	0	0	0	0	0	16726	609	21	2		2	TRRAP	7	98574467	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1924358	98574467	60564196	898	137889											
TRRAP	8295	broad.mit.edu	37	chr7	98592252	98592252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcgaaatgttactccGtggcgtttgagaaaagtgga	14	7	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98592252	T	T	98592252	3	4	168	1	0	0	0	0	1	0	0	0	16726	1145	40	3	10215	3	TRRAP	7	98592252	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	17785	98592252	60546411	899	137890											
AP4M1	9179	broad.mit.edu	37	chr7	99699374	99699374	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcattctgtcctccaaggggGacccgctcatctacaaagac	8	14	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99699374	C	C	99699374	3	2	168	1	0	0	0	0	1	0	0	0	755	1174	41	4	39	4	AP4M1	7	99699374	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1107122	99699374	59439289	900	137891											
ACTL6B	51412	broad.mit.edu	37	chr7	100244137	100244137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacagctgagccaggacGggtgtccagggctctgggtc	17	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100244137	T	T	100244137	1	4	168	0	1	0	0	0	0	0	0	0	199	1131	39	1		1	ACTL6B	7	100244137	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	544763	100244137	58894526	901	137892											
EPO	2056	broad.mit.edu	37	chr7	100320627	100320627	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatctcccctccagatgcGgcctcagctgctccactccg	8	20	2	1	rs78925197	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100320627	T	T	100320627	2	4	168	1	0	0	0	0	0	0	0	1	5230	1103	39	1		1	EPO	7	100320627	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	76490	100320627	58818036	902	137893											
ZAN	7455	broad.mit.edu	37	chr7	100334246	100334246	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcccccggggggtaccctAacggaggtgaggggctatgg	20	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100334246	T	T	100334246	3	4	168	1	0	0	0	0	1	0	0	0	17640	362	13	5	257	5	ZAN	7	100334246	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	13619	100334246	58804417	903	137894											
ZAN	7455	broad.mit.edu	37	chr7	100350635	100350635	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatctccacggaaaaaccCaccatccccacggaaaaact	4	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100350635	A	A	100350635	2	1	168	1	0	0	0	0	0	0	0	1	17640	581	21	2		2	ZAN	7	100350635	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	16389	100350635	58788028	904	137895											
MUC17	140453	broad.mit.edu	37	chr7	100681897	100681897	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaagcactccactaacAagtgtgcctgtcagcaccat	9	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100681897	C	C	100681897	2	2	168	1	0	0	0	0	0	0	0	1	10068	117	5	5		5	MUC17	7	100681897	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	331262	100681897	58456766	905	137896											
MOGAT3	346606	broad.mit.edu	37	chr7	100843632	100843632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacccccggagtcacctccCctcaccccccatgtccccac	5	24	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100843632	A	A	100843632	1	1	168	0	1	0	0	0	0	0	0	0	9790	638	22	2		2	MOGAT3	7	100843632	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	161735	100843632	58295031	906	137897											
CUX1	1523	broad.mit.edu	37	chr7	101821689	101821689	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctcagttgccagcacaggTagcctcgagcacccgcctca	10	16	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101821689	C	C	101821689	1	2	168	0	1	0	0	0	0	0	0	0	4097	1653	57	5		5	CUX1	7	101821689	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	978057	101821689	57316974	907	137898											
RELN	5649	broad.mit.edu	37	chr7	103194051	103194051	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggaatccatttaggcaaaAgttcatcatgatttgtatac	7	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103194051	T	T	103194051	1	4	168	0	1	0	0	0	0	0	0	0	13328	87	3	5		5	RELN	7	103194051	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1372362	103194051	55944612	908	137899											
RELN	5649	broad.mit.edu	37	chr7	103236888	103236888	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaactaatgcgaggaccatCaggtgggtagttacctgggt	14	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103236888	T	T	103236888	1	4	168	0	1	0	0	0	0	0	0	0	13328	841	29	4		4	RELN	7	103236888	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	42837	103236888	55901775	909	137900											
RELN	5649	broad.mit.edu	37	chr7	103290888	103290888	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcatatctttagaatctAttttacatggttttcatgtt	5	5	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103290888	G	G	103290888	1	3	168	0	1	0	0	0	0	0	0	0	13328	464	16	5		5	RELN	7	103290888	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	54000	103290888	55847775	910	137901											
ORC5L	5001	broad.mit.edu	37	chr7	103828716	103828716	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccagatgtctgagctcttTcaaatctcgacaaacagtgt	7	10	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103828716	C	C	103828716	3	2	168	1	0	0	0	0	1	0	0	0	11359	1792	62	5	774	5	ORC5L	7	103828716	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	537828	103828716	55309947	911	137902											
LHFPL3	375612	broad.mit.edu	37	chr7	104309700	104309700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacacagagcagcaatccCctacaagtggtgggggaaaa	12	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104309700	A	A	104309700	1	1	168	0	1	0	0	0	0	0	0	0	8838	638	22	2		2	LHFPL3	7	104309700	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	480984	104309700	54828963	912	137903											
SLC26A4	5172	broad.mit.edu	37	chr7	107330784	107330785	+	Intron	DNP	AC	CA	CA													caggacaatttgcctttcagActtgtacttcctaatctgat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	107330785	CA	CA	107330784	1	2	168	0	1	0	0	0	0	0	0	0	14633	290	10	5		5	SLC26A4	7	107330784	Intron	DNP	AC	TCGA-50-6590-01A-12D-1855-08	3021084	107330784	51807879	913	137904											
SLC26A4	5172	broad.mit.edu	37	chr7	107350696	107350696	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctaaactatcatgatttCtataaatggcaaacattaca	3	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107350696	G	G	107350696	1	3	168	0	1	0	0	0	0	0	0	0	14633	928	32	4		4	SLC26A4	7	107350696	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	19912	107350696	51787967	914	137905											
SLC26A4	5172	broad.mit.edu	37	chr7	107352929	107352929	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttcaaatcattttcagtgGagcatcaggtgggttgatgc	12	7	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107352929	T	T	107352929	1	4	168	0	1	0	0	0	0	0	0	0	14633	1189	41	3		3	SLC26A4	7	107352929	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2233	107352929	51785734	915	137906											
LAMB4	22798	broad.mit.edu	37	chr7	107756607	107756607	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgagtaactgagccaccCttgaacacaacagaaatagc	7	10	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107756607	A	A	107756607	5	1	168	1	0	0	0	0	0	0	1	0	8685	695	24	2	5379	2	LAMB4	7	107756607	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	403678	107756607	51382056	916	137907											
PNPLA8	50640	broad.mit.edu	37	chr7	108150872	108150872	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatataggcagatgtacagaActgaaattcgaatggcgagg	12	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108150872	C	C	108150872	1	2	168	0	1	0	0	0	0	0	0	0	12266	58	2	5		5	PNPLA8	7	108150872	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	394265	108150872	50987791	917	137908											
C7orf66	154907	broad.mit.edu	37	chr7	108524400	108524400	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaccaggtttatgcacaaTgagtcaggctcattcctcaa	9	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108524400	A	A	108524400	1	1	168	0	1	0	0	0	0	0	0	0	2437	1479	51	5		5	C7orf66	7	108524400	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	373528	108524400	50614263	918	137909											
C7orf66	154907	broad.mit.edu	37	chr7	108524580	108524580	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accatcactgggtgtcatcaCagccatcattttgcaaggtt	8	11	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108524580	G	G	108524580	3	3	168	1	0	0	0	0	1	0	0	0	2437	478	17	4	345	4	C7orf66	7	108524580	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	180	108524580	50614083	919	137910											
IMMP2L	83943	broad.mit.edu	37	chr7	111034908	111034908	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtagttacatgaagcaaaTagtatcagtgtaaggcccat	9	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111034908	C	C	111034908	1	2	168	0	1	0	0	0	0	0	0	0	7787	1421	49	5		5	IMMP2L	7	111034908	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	2510328	111034908	48103755	920	137911											
CTTNBP2	83992	broad.mit.edu	37	chr7	117424334	117424334	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattcttagcagcagaatacAaggcagaatggccatcttca	8	10	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117424334	T	T	117424334	4	4	168	1	0	0	0	0	0	1	0	0	4079	131	5	5	2824	5	CTTNBP2	7	117424334	Nonsense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	6389426	117424334	41714329	921	137912											
C7orf58	79974	broad.mit.edu	37	chr7	120704476	120704476	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgttgctactttgtctatCaattcggcaatcacagatct	6	10	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120704476	A	A	120704476	1	1	168	0	1	0	0	0	0	0	0	0	2430	841	29	3		3	C7orf58	7	120704476	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3280142	120704476	38434187	922	137913											
PTPRZ1	5803	broad.mit.edu	37	chr7	121652668	121652668	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaccttcctttcaggcttctGatgttgacaccttgcttaaa	6	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121652668	A	A	121652668	3	1	168	1	0	0	0	0	1	0	0	0	12922	1290	45	4	3614	4	PTPRZ1	7	121652668	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	948192	121652668	37485995	923	137914											
PTPRZ1	5803	broad.mit.edu	37	chr7	121698978	121698978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgccaatagggatgggcCtatgattgttcatgatgagt	13	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121698978	A	A	121698978	3	1	168	1	0	0	0	0	1	0	0	0	12922	681	24	2	6763	2	PTPRZ1	7	121698978	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	46310	121698978	37439685	924	137915											
AASS	10157	broad.mit.edu	37	chr7	121769442	121769442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatctcatccaacaagccCatattggcctcctgagcttt	6	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121769442	A	A	121769442	3	1	168	1	0	0	0	0	1	0	0	0	24	594	21	2	2508	2	AASS	7	121769442	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	70464	121769442	37369221	925	137916											
CADPS2	93664	broad.mit.edu	37	chr7	122261607	122261607	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatctcctatgtccaaaaaTgcagagttctgtgaacgttt	7	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122261607	C	C	122261607	2	2	168	1	0	0	0	0	0	0	0	1	2597	1451	51	5		5	CADPS2	7	122261607	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	492165	122261607	36877056	926	137917											
SPAM1	6677	broad.mit.edu	37	chr7	123594546	123594546	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcatatacccgcatagttTttactgatcaagttttgaaa	6	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123594546	A	A	123594546	3	1	168	1	0	0	0	0	1	0	0	0	15102	1841	64	5	924	5	SPAM1	7	123594546	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1332939	123594546	35544117	927	137918											
GRM8	2918	broad.mit.edu	37	chr7	126172989	126172989	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaaaaagttgtcaagtgTatttccttctacttaccttt	6	8	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126172989	C	C	126172989	1	2	168	0	1	0	0	0	0	0	0	0	6869	1653	57	5		5	GRM8	7	126172989	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	2578443	126172989	32965674	928	137919											
FAM71F1	84691	broad.mit.edu	37	chr7	128363286	128363286	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaagcctcccagcccagCgagagtctcattcagctaat	7	16	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128363286	T	T	128363286	2	4	168	1	0	0	0	0	0	0	0	1	5663	767	27	4		4	FAM71F1	7	128363286	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	2190297	128363286	30775377	929	137920											
SMO	6608	broad.mit.edu	37	chr7	128849255	128849255	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgtgagtgaggggcatgGaggcggcagtgctgggagct	21	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128849255	T	T	128849255	1	4	168	0	1	0	0	0	0	0	0	0	14914	1189	41	3		3	SMO	7	128849255	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	485969	128849255	30289408	930	137921											
SMO	6608	broad.mit.edu	37	chr7	128850377	128850377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgctgctcatctggaggcGtacctggtgcaggtgggcat	15	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128850377	T	T	128850377	3	4	168	1	0	0	0	0	1	0	0	0	14914	1145	40	3	1674	3	SMO	7	128850377	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1122	128850377	30288286	931	137922											
FAM40B	57464	broad.mit.edu	37	chr7	129091374	129091374	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcaggggagctgagatcaGaggtggatatgctatgagga	18	4	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129091374	A	A	129091374	1	1	168	0	1	0	0	0	0	0	0	0	5612	957	33	4		4	FAM40B	7	129091374	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	240997	129091374	30047289	932	137923											
COPG2	26958	broad.mit.edu	37	chr7	130289969	130289969	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagattccaattacatatgTgttaggccacttgatcttat	6	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130289969	C	C	130289969	1	2	168	0	1	0	0	0	0	0	0	0	3764	1711	59	5		5	COPG2	7	130289969	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1198595	130289969	28848694	933	137924											
COPG2	26958	broad.mit.edu	37	chr7	130295014	130295014	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgattgtttgctagacaCtgcttataaaggtgcagtag	10	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130295014	A	A	130295014	1	1	168	0	1	0	0	0	0	0	0	0	3764	580	20	3		3	COPG2	7	130295014	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5045	130295014	28843649	934	137925											
TSGA13	114960	broad.mit.edu	37	chr7	130353959	130353959	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatgtcttccaagagcgaTgcgagtgtcagtggttcccg	14	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130353959	G	G	130353959	2	3	168	1	0	0	0	0	0	0	0	1	16744	1451	51	5		5	TSGA13	7	130353959	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	58945	130353959	28784704	935	137926											
PLXNA4	91584	broad.mit.edu	37	chr7	131872072	131872072	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctattgcaataatgctgTctcaggaaattggctctatc	7	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131872072	C	C	131872072	1	2	168	0	1	0	0	0	0	0	0	0	12217	1682	58	5		5	PLXNA4	7	131872072	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1518113	131872072	27266591	936	137927											
EXOC4	60412	broad.mit.edu	37	chr7	133749297	133749297	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttagcagggcgtactgcggTtggtgacgggggtcccctca	16	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133749297	A	A	133749297	1	1	168	0	1	0	0	0	0	0	0	0	5348	1740	60	5		5	EXOC4	7	133749297	3'UTR	SNP	T	TCGA-50-6590-01A-12D-1855-08	1877225	133749297	25389366	937	137928											
AKR1B10	57016	broad.mit.edu	37	chr7	134215686	134215686	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatctctgccttgataAcatccgtgaatacaacacta	4	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134215686	G	G	134215686	1	3	168	0	1	0	0	0	0	0	0	0	467	58	2	5		5	AKR1B10	7	134215686	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	466389	134215686	24922977	938	137929											
CALD1	800	broad.mit.edu	37	chr7	134617818	134617818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccgcattcctggagcgcCtggctcggcgtgaggaaaga	16	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134617818	A	A	134617818	3	1	168	1	0	0	0	0	1	0	0	0	2607	680	24	2	365	2	CALD1	7	134617818	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	402132	134617818	24520845	939	137930											
CNOT4	4850	broad.mit.edu	37	chr7	135129642	135129642	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttcaactatcacgatgtgGgcatctgcaaagctgttgcc	9	10	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135129642	C	C	135129642	1	2	168	0	1	0	0	0	0	0	0	0	3653	1247	43	4		4	CNOT4	7	135129642	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	511824	135129642	24009021	940	137931											
CHRM2	1129	broad.mit.edu	37	chr7	136623091	136623091	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctccgagtcgtcgtcTgctgctgcaggaggctccac	13	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136623091	C	C	136623091	1	2	168	0	1	0	0	0	0	0	0	0	3408	1595	55	5		5	CHRM2	7	136623091	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1493449	136623091	22515572	941	137932											
DGKI	9162	broad.mit.edu	37	chr7	137148183	137148183	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacagcccacagtacatcctCtcccagcaatcacagtggca	6	17	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137148183	A	A	137148183	1	1	168	0	1	0	0	0	0	0	0	0	4511	928	32	3		3	DGKI	7	137148183	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	525092	137148183	21990480	942	137933											
JHDM1D	80853	broad.mit.edu	37	chr7	139833402	139833402	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccagcttgcactggtttgGaaccatcatcaatttctgtg	8	10	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139833402	A	A	139833402	3	1	168	1	0	0	0	0	1	0	0	0	8018	1174	41	4	2562	4	JHDM1D	7	139833402	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2685219	139833402	19305261	943	137934											
SLC37A3	84255	broad.mit.edu	37	chr7	140048468	140048468	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatggacagcttgtcggCttccgcctccttccagccga	9	16	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140048468	T	T	140048468	3	4	168	1	0	0	0	0	1	0	0	0	14713	797	28	4	675	4	SLC37A3	7	140048468	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	215066	140048468	19090195	944	137935											
DENND2A	27147	broad.mit.edu	37	chr7	140287523	140287523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttagtctgcgcgtaccaGtccaccctgctgctctcaga	9	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140287523	T	T	140287523	3	4	168	1	0	0	0	0	1	0	0	0	4469	1020	36	3	2044	3	DENND2A	7	140287523	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	239055	140287523	18851140	945	137936											
MGAM	8972	broad.mit.edu	37	chr7	141726897	141726897	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attctgatttttattttcttCatttttaacctttcaagagg	4	6	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141726897	T	T	141726897	1	4	168	0	1	0	0	0	0	0	0	0	9634	841	29	4		4	MGAM	7	141726897	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1439374	141726897	17411766	946	137937											
MGAM	8972	broad.mit.edu	37	chr7	141752684	141752684	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggggccacagctgacatctCcttaaagtcttccgtttatg	9	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141752684	T	T	141752684	3	4	168	1	0	0	0	0	1	0	0	0	9634	855	30	4	3157	4	MGAM	7	141752684	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	25787	141752684	17385979	947	137938											
MGAM	8972	broad.mit.edu	37	chr7	141756618	141756618	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgtgaggcttggcatttttCtttattttcagatgtgacgt	10	7	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141756618	G	G	141756618	1	3	168	0	1	0	0	0	0	0	0	0	9634	928	32	4		4	MGAM	7	141756618	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3934	141756618	17382045	948	137939											
MGAM	8972	broad.mit.edu	37	chr7	141768474	141768474	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgtcactgcatatttcCctagagcccgttggtacgat	9	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141768474	T	T	141768474	1	4	168	0	1	0	0	0	0	0	0	0	9634	638	22	4		4	MGAM	7	141768474	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	11856	141768474	17370189	949	137940											
TRYX3	136541	broad.mit.edu	37	chr7	141955393	141955393	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgatcacccaaagcggGtggatcaggactccagcgca	13	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141955393	A	A	141955393	2	1	168	1	0	0	0	0	0	0	0	1	16729	1252	44	4		4	TRYX3	7	141955393	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	186919	141955393	17183270	950	137941											
EPHB6	2051	broad.mit.edu	37	chr7	142561083	142561083	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcagttctggctctggAaggtaagagggaggggagac	17	6	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142561083	T	T	142561083	3	4	168	1	0	0	0	0	1	0	0	0	5220	246	9	5	100	5	EPHB6	7	142561083	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	605690	142561083	16577580	951	137942											
EPHB6	2051	broad.mit.edu	37	chr7	142564021	142564021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatggggtgtctgagctcaGccctgaccctcctcaggctg	12	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142564021	T	T	142564021	3	4	168	1	0	0	0	0	1	0	0	0	5220	971	34	3	1427	3	EPHB6	7	142564021	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2938	142564021	16574642	952	137943											
TRPV6	55503	broad.mit.edu	37	chr7	142575641	142575641	+	Intron	DEL	G	-	-													tcctgggaggccccatgtgtGgggctcacctaggagatcat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	142575641	-	-	142575641	6	5	168	0	1	1	0	1	0	0	0	0	16725	1363	47	0		0	TRPV6	7	142575641	Intron	DEL	G	TCGA-50-6590-01A-12D-1855-08	11620	142575641	16563022	953	137944											
TRPV5	56302	broad.mit.edu	37	chr7	142612498	142612498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgacatggaatggccccCcaagaatcgtctttccaaaa	8	11	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142612498	A	A	142612498	3	1	168	1	0	0	0	0	1	0	0	0	16724	623	22	2	948	2	TRPV5	7	142612498	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	36857	142612498	16526165	954	137945											
KEL	3792	broad.mit.edu	37	chr7	142651280	142651280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccaggcaccttgagctgGtcgatagtgaccatctggaa	12	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142651280	T	T	142651280	3	4	168	1	0	0	0	0	1	0	0	0	8212	1252	44	3	1331	3	KEL	7	142651280	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	38782	142651280	16487383	955	137946											
KEL	3792	broad.mit.edu	37	chr7	142658287	142658287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggtgagtaactaagtgGggagctgatgaaaaagaaat	13	3	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142658287	T	T	142658287	1	4	168	0	1	0	0	0	0	0	0	0	8212	1247	43	2		2	KEL	7	142658287	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	7007	142658287	16480376	956	137947											
OR2F1	26211	broad.mit.edu	37	chr7	143657039	143657039	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctgactcccttcacAgattaataatccttgaatat	3	9	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143657039	T	T	143657039	1	4	168	0	1	0	0	0	0	0	0	0	11090	203	7	5		5	OR2F1	7	143657039	5'UTR	SNP	A	TCGA-50-6590-01A-12D-1855-08	998752	143657039	15481624	957	137948											
OR2F1	26211	broad.mit.edu	37	chr7	143657207	143657207	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgtctcattgtccttctGatcagactggacagccgact	8	12	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143657207	T	T	143657207	2	4	168	1	0	0	0	0	0	0	0	1	11090	1277	45	3		3	OR2F1	7	143657207	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	168	143657207	15481456	958	137949											
OR6B1	135946	broad.mit.edu	37	chr7	143701184	143701184	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccatgtttctgatattccTtgtggcctatattctgacag	8	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143701184	C	C	143701184	3	2	168	1	0	0	0	0	1	0	0	0	11281	1609	56	5	97	5	OR6B1	7	143701184	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	43977	143701184	15437479	959	137950											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092897	147092897	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgatcttttcatcctacctCacgttgtccaaactttccaa	3	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147092897	G	G	147092897	1	3	168	0	1	0	0	0	0	0	0	0	3679	841	29	4		4	CNTNAP2	7	147092897	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3391713	147092897	12045766	960	137951											
EZH2	2146	broad.mit.edu	37	chr7	148512461	148512461	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gattcatcagtagacgtcctCcattcaaattggtttaacat	6	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148512461	G	G	148512461	1	3	168	0	1	0	0	0	0	0	0	0	5377	870	30	4		4	EZH2	7	148512461	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1419564	148512461	10626202	961	137952											
ZNF777	27153	broad.mit.edu	37	chr7	149129541	149129541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggggttgaacgtgggccCgcgttcgggtgagacgcagc	18	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149129541	T	T	149129541	3	4	168	1	0	0	0	0	1	0	0	0	18279	652	23	4	677	4	ZNF777	7	149129541	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	617080	149129541	10009122	962	137953											
ZNF746	155061	broad.mit.edu	37	chr7	149174026	149174026	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtaccttccgtggaggcTgctgtgttgagcttcagggt	14	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149174026	A	A	149174026	2	1	168	1	0	0	0	0	0	0	0	1	18258	1567	55	5		5	ZNF746	7	149174026	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	44485	149174026	9964637	963	137954											
SSPO	23145	broad.mit.edu	37	chr7	149489633	149489633	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagctgcacatccaccacCtccttcaggctctgactgtt	6	18	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149489633	T	T	149489633	1	4	168	0	1	0	0	0	0	0	0	0	15307	696	24	4		4	SSPO	7	149489633	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	315607	149489633	9649030	964	137955											
SSPO	23145	broad.mit.edu	37	chr7	149494478	149494478	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtggagtggggggacgggGacctcgcctcacagcctcac	18	12	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149494478	T	T	149494478	1	4	168	0	1	0	0	0	0	0	0	0	15307	1189	41	3		3	SSPO	7	149494478	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4845	149494478	9644185	965	137956											
SSPO	23145	broad.mit.edu	37	chr7	149523230	149523230	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttgggccttggtcagcCtggagcagttgctcggcccc	14	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149523230	A	A	149523230	2	1	168	1	0	0	0	0	0	0	0	1	15307	668	24	2		2	SSPO	7	149523230	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	28752	149523230	9615433	966	137957											
ZNF862	643641	broad.mit.edu	37	chr7	149557773	149557773	+	Frame_Shift_Del	DEL	G	-	-													cggttagtcagaggttacacGgggccttttaaagtggagac							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149557773	-	-	149557773	7	5	168	1	0	1	0	1	0	0	0	0	18324	1103	39	0	1550	0	ZNF862	7	149557773	Frame_Shift_Del	DEL	G	TCGA-50-6590-01A-12D-1855-08	34543	149557773	9580890	967	137958											
ESYT2	57488	broad.mit.edu	37	chr7	158552764	158552764	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaccttgtcgaggtttgaCgcatttggcattaacgtgag	12	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158552764	G	G	158552764	2	3	168	1	0	0	0	0	0	0	0	1	5307	523	19	4		4	ESYT2	7	158552764	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	8994991	158552764	585899	968	137959											
VIPR2	7434	broad.mit.edu	37	chr7	158829533	158829533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagagcccctccaccagcaGccagaagaagttggccatga	11	13	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158829533	T	T	158829533	3	4	168	1	0	0	0	0	1	0	0	0	17297	962	34	3	686	3	VIPR2	7	158829533	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	276769	158829533	309130	969	137960											
MYOM2	9172	broad.mit.edu	37	chr8	2054265	2054267	+	Intron	DEL	TCT	-	-													aatgatcgacattcacctacTcttcttcctttttagctcca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2054267	-	-	2054265	6	5	168	0	1	1	0	1	0	0	0	0	10186	1566	54	0		0	MYOM2	8	2054265	Intron	DEL	TCT	TCGA-50-6590-01A-12D-1855-08		2054265	144309757	970	137961											
CSMD1	64478	broad.mit.edu	37	chr8	3216592	3216592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcaacaaacccccaccCgaccccgaccaccctaggct	5	21	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3216592	A	A	3216592	1	1	168	0	1	0	0	0	0	0	0	0	3978	667	23	1		1	CSMD1	8	3216592	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1162327	3216592	143147430	971	137962											
RP1L1	94137	broad.mit.edu	37	chr8	10466200	10466200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagagccttgacccccaGtttctcccctttcacttatg	6	17	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10466200	T	T	10466200	3	4	168	1	0	0	0	0	1	0	0	0	13644	1029	36	3	1798	3	RP1L1	8	10466200	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	7249608	10466200	135897822	972	137963											
RP1L1	94137	broad.mit.edu	37	chr8	10469019	10469019	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggaagagcgcctctgGgggcagggccgccccctggg	18	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10469019	T	T	10469019	2	4	168	1	0	0	0	0	0	0	0	1	13644	1219	43	2		2	RP1L1	8	10469019	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2819	10469019	135895003	973	137964											
C8orf74	203076	broad.mit.edu	37	chr8	10557713	10557713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccggcgaggctccccagCcctgctcatcggccttcccc	10	20	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10557713	A	A	10557713	1	1	168	0	1	0	0	0	0	0	0	0	2462	754	26	3		3	C8orf74	8	10557713	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	88694	10557713	135806309	974	137965											
SLC39A14	23516	broad.mit.edu	37	chr8	22272314	22272314	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catttggtttcaaccctctgGaagattattatgtctccaag	7	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22272314	T	T	22272314	4	4	168	1	0	0	0	0	0	1	0	0	14731	1175	41	3	837	3	SLC39A14	8	22272314	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	11714601	22272314	124091708	975	137966											
PDLIM2	64236	broad.mit.edu	37	chr8	22439036	22439036	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgcccctgcggctgcagCtggaccggtagggcctcccg	14	18	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22439036	T	T	22439036	2	4	168	1	0	0	0	0	0	0	0	1	11774	796	28	4		4	PDLIM2	8	22439036	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	166722	22439036	123924986	976	137967											
SLC25A37	51312	broad.mit.edu	37	chr8	23429055	23429055	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccggacctacaacccgcAgtcccacatcatctcaggcg	7	19	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23429055	T	T	23429055	3	4	168	1	0	0	0	0	1	0	0	0	14615	188	7	5	718	5	SLC25A37	8	23429055	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	990019	23429055	122934967	977	137968											
ADRA1A	148	broad.mit.edu	37	chr8	26627776	26627776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctacacagcagcagacctGcaaaaagcttttacttctca	5	14	1	1	rs1048102		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26627776	T	T	26627776	3	4	168	1	0	0	0	0	1	0	0	0	334	1328	46	3	404	3	ADRA1A	8	26627776	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3198721	26627776	119736246	978	137969											
PNOC	5368	broad.mit.edu	37	chr8	28186863	28186863	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actacctcctccctccctacTccagagcagactctgagtga	6	17	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28186863	A	A	28186863	1	1	168	0	1	0	0	0	0	0	0	0	12257	1566	54	5		5	PNOC	8	28186863	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1559087	28186863	118177159	979	137970											
TEX15	56154	broad.mit.edu	37	chr8	30701812	30701812	+	Frame_Shift_Del	DEL	A	-	-													tgggcaggtaaaataggcgtAtgattaactcctagaattcc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30701812	-	-	30701812	7	5	168	1	0	1	0	1	0	0	0	0	15901	446	16	0	3663	0	TEX15	8	30701812	Frame_Shift_Del	DEL	A	TCGA-50-6590-01A-12D-1855-08	2514949	30701812	115662210	980	137971											
TACC1	6867	broad.mit.edu	37	chr8	38684771	38684771	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagaaactggcatccacgtCatgtggtcagaaatcagctg	12	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38684771	T	T	38684771	3	4	168	1	0	0	0	0	1	0	0	0	15620	838	29	4	1556	4	TACC1	8	38684771	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	7982959	38684771	107679251	981	137972											
ANK1	286	broad.mit.edu	37	chr8	41557874	41557874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaagcaggaatggattaGtgagcatcagggttgcttag	15	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41557874	T	T	41557874	1	4	168	0	1	0	0	0	0	0	0	0	620	1044	36	3		3	ANK1	8	41557874	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2873103	41557874	104806148	982	137973											
ANK1	286	broad.mit.edu	37	chr8	41573153	41573153	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgttgcttccttagaccacGaggcgggaggctgtaccttg	13	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41573153	T	T	41573153	1	4	168	0	1	0	0	0	0	0	0	0	620	1073	37	3		3	ANK1	8	41573153	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	15279	41573153	104790869	983	137974											
SNTG1	54212	broad.mit.edu	37	chr8	51449065	51449065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattctgttaataaataaGttaaccaatacaactttagt	4	6	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51449065	T	T	51449065	1	4	168	0	1	0	0	0	0	0	0	0	14988	1044	36	3		3	SNTG1	8	51449065	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	9875912	51449065	94914957	984	137975											
SNTG1	54212	broad.mit.edu	37	chr8	51571098	51571098	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattatgcaaatcaaatacAgtggtaaataactttctaaa	4	5	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51571098	T	T	51571098	1	4	168	0	1	0	0	0	0	0	0	0	14988	203	7	5		5	SNTG1	8	51571098	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	122033	51571098	94792924	985	137976											
ST18	9705	broad.mit.edu	37	chr8	53045795	53045795	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcagaaataagatcaatcCtaccttctgtgggaagcata	7	9	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53045795	T	T	53045795	1	4	168	0	1	0	0	0	0	0	0	0	15330	696	24	4		4	ST18	8	53045795	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1474697	53045795	93318227	986	137977											
NPBWR1	2831	broad.mit.edu	37	chr8	53852868	53852868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgtcatgagcgccgaccGctacctggtggtgttggcca	13	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53852868	T	T	53852868	3	4	168	1	0	0	0	0	1	0	0	0	10663	1087	38	3	403	3	NPBWR1	8	53852868	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	807073	53852868	92511154	987	137978											
RP1	6101	broad.mit.edu	37	chr8	55533539	55533539	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccaaaatgagtgataccCcttctactggtttttccatc	6	12	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55533539	G	G	55533539	3	3	168	1	0	0	0	0	1	0	0	0	13643	623	22	4	15	4	RP1	8	55533539	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1680671	55533539	90830483	988	137979											
ARMC1	55156	broad.mit.edu	37	chr8	66534452	66534452	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggccctgtaagtaagtaaTataagtaagtatataaataa	8	3	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66534452	C	C	66534452	1	2	168	0	1	0	0	0	0	0	0	0	953	1421	49	5		5	ARMC1	8	66534452	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	11000913	66534452	79829570	989	137980											
PREX2	80243	broad.mit.edu	37	chr8	68939592	68939592	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacctcattgtagccattttCttgtatctacatattttgct	4	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68939592	G	G	68939592	1	3	168	0	1	0	0	0	0	0	0	0	12583	928	32	4		4	PREX2	8	68939592	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2405140	68939592	77424430	990	137981											
SLCO5A1	81796	broad.mit.edu	37	chr8	70744068	70744068	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttggtcccagggtataaaTaggtgtggagcccattccaa	13	8	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70744068	C	C	70744068	3	2	168	1	0	0	0	0	1	0	0	0	14845	1406	49	5	1741	5	SLCO5A1	8	70744068	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1804476	70744068	75619954	991	137982											
PRDM14	63978	broad.mit.edu	37	chr8	70978417	70978417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggtttgtggaaaagagcCcagtccttctactgggatgc	14	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70978417	A	A	70978417	1	1	168	0	1	0	0	0	0	0	0	0	12561	638	22	2		2	PRDM14	8	70978417	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	234349	70978417	75385605	992	137983											
EYA1	2138	broad.mit.edu	37	chr8	72211453	72211453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaccctggccaaaactggGataagacggatagtcctacc	10	12	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72211453	T	T	72211453	3	4	168	1	0	0	0	0	1	0	0	0	5371	1174	41	3	1163	3	EYA1	8	72211453	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1233036	72211453	74152569	993	137984											
TRPA1	8989	broad.mit.edu	37	chr8	72946447	72946447	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatatatttccataattcaCagcgacaaaatcaactactg	3	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72946447	T	T	72946447	1	4	168	0	1	0	0	0	0	0	0	0	16702	493	17	4		4	TRPA1	8	72946447	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	734994	72946447	73417575	994	137985											
TRPA1	8989	broad.mit.edu	37	chr8	72951078	72951078	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttataatcctttattttaGaaagttaaaatttgaaatta	3	2	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72951078	C	C	72951078	1	2	168	0	1	0	0	0	0	0	0	0	16702	957	33	4		4	TRPA1	8	72951078	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4631	72951078	73412944	995	137986											
TRPA1	8989	broad.mit.edu	37	chr8	72964795	72964795	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaaatcatcccaacaccAgagaacactaaatgacagtg	5	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72964795	G	G	72964795	1	3	168	0	1	0	0	0	0	0	0	0	16702	203	7	5		5	TRPA1	8	72964795	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	13717	72964795	73399227	996	137987											
UBE2W	55284	broad.mit.edu	37	chr8	74742658	74742658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttctcatttaaggtcattCcaggaggtgggtcattttgc	10	8	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74742658	A	A	74742658	3	1	168	1	0	0	0	0	1	0	0	0	17003	855	30	3	410	3	UBE2W	8	74742658	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1777863	74742658	71621364	997	137988											
ZFHX4	79776	broad.mit.edu	37	chr8	77616468	77616468	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaaaacagctccacagatGacaacctgaaaacggatgag	11	9	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77616468	C	C	77616468	3	2	168	1	0	0	0	0	1	0	0	0	17761	1290	45	4	147	4	ZFHX4	8	77616468	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2873810	77616468	68747554	998	137989											
ZFHX4	79776	broad.mit.edu	37	chr8	77767959	77767959	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcacaagcgttttcgaacGcaaatgagcaatcttcaact	8	10	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77767959	T	T	77767959	2	4	168	1	0	0	0	0	0	0	0	1	17761	1074	38	3		3	ZFHX4	8	77767959	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	151491	77767959	68596063	999	137990											
PEX2	5828	broad.mit.edu	37	chr8	77895970	77895970	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaattaatcagcccacCtaatttcaaaagtccaatca	2	11	3	0	rs13251732		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77895970	A	A	77895970	3	1	168	1	0	0	0	0	1	0	0	0	11840	681	24	2	476	2	PEX2	8	77895970	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	128011	77895970	68468052	1000	137991											
CA2	760	broad.mit.edu	37	chr8	86392880	86392880	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaacattaattatcaatGttttattgtgtcttttaggt	7	3	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86392880	C	C	86392880	1	2	168	0	1	0	0	0	0	0	0	0	2542	1392	48	4		4	CA2	8	86392880	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	8496910	86392880	59971142	1001	137992											
ATP6V0D2	245972	broad.mit.edu	37	chr8	87125988	87125988	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtaactttttggctaatCacacaaatcctcttactgtt	5	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87125988	G	G	87125988	3	3	168	1	0	0	0	0	1	0	0	0	1178	826	29	4	187	4	ATP6V0D2	8	87125988	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	733108	87125988	59238034	1002	137993											
ATP6V0D2	245972	broad.mit.edu	37	chr8	87165051	87165051	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttcctcaggtacaaAtgaatgtgctggcattcaac	7	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87165051	T	T	87165051	3	4	168	1	0	0	0	0	1	0	0	0	1178	101	4	5	928	5	ATP6V0D2	8	87165051	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	39063	87165051	59198971	1003	137994											
WWP1	11059	broad.mit.edu	37	chr8	87424098	87424098	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaacacagaaaccttgccAtcagggtatgttaagctttt	8	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87424098	G	G	87424098	2	3	168	1	0	0	0	0	0	0	0	1	17542	204	8	5		5	WWP1	8	87424098	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	259047	87424098	58939924	1004	137995											
FAM82B	51115	broad.mit.edu	37	chr8	87517343	87517343	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcatgggaaagccacctctCcctgaatgagagacctcatc	9	13	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87517343	A	A	87517343	1	1	168	0	1	0	0	0	0	0	0	0	5685	870	30	3		3	FAM82B	8	87517343	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	93245	87517343	58846679	1005	137996											
CNGB3	54714	broad.mit.edu	37	chr8	87673939	87673939	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcacttctattttcccattCtgacccatgggtagtggttg	9	10	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87673939	G	G	87673939	1	3	168	0	1	0	0	0	0	0	0	0	3633	928	32	4		4	CNGB3	8	87673939	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	156596	87673939	58690083	1006	137997											
CNBD1	168975	broad.mit.edu	37	chr8	88249384	88249384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacaagcaacaaggtaacGggcttttgtaaaactttatc	7	9	0	0	rs151276481	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88249384	T	T	88249384	1	4	168	0	1	0	0	0	0	0	0	0	3623	1131	39	1		1	CNBD1	8	88249384	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	575445	88249384	58114638	1007	137998											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885966	88885966	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcagtgttggtattcgcCagtatgcggttaaatcggtc	13	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88885966	A	A	88885966	2	1	168	1	0	0	0	0	0	0	0	1	4305	581	21	2		2	DCAF4L2	8	88885966	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	636582	88885966	57478056	1008	137999											
SLC26A7	115111	broad.mit.edu	37	chr8	92401487	92401487	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacatgaggccactgttAccctcccaccagtcaacaaa	5	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92401487	C	C	92401487	1	2	168	0	1	0	0	0	0	0	0	0	14636	406	14	5		5	SLC26A7	8	92401487	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	3515521	92401487	53962535	1009	138000											
RUNX1T1	862	broad.mit.edu	37	chr8	92998337	92998337	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgttttcgagatactcatCtgaagaaaagttacctagtg	9	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92998337	T	T	92998337	1	4	168	0	1	0	0	0	0	0	0	0	13858	928	32	4		4	RUNX1T1	8	92998337	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	596850	92998337	53365685	1010	138001											
GEM	2669	broad.mit.edu	37	chr8	95262773	95262774	+	Missense_Mutation	DNP	TC	CT	CT													gctggacagctgcagaggtcTcgatgaacttgcagtcaaac							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	95262774	CT	CT	95262773	3	2	168	1	0	0	0	0	1	0	0	0	6393	1551	54	5	238	5	GEM	8	95262773	Missense_Mutation	DNP	TC	TCGA-50-6590-01A-12D-1855-08	2264436	95262773	51101249	1011	138002											
PTDSS1	9791	broad.mit.edu	37	chr8	97307407	97307407	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatttggacatttctggGgctgggccatgaaggccttg	14	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97307407	T	T	97307407	3	4	168	1	0	0	0	0	1	0	0	0	12842	1232	43	2	541	2	PTDSS1	8	97307407	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2044634	97307407	49056615	1012	138003											
SDC2	6383	broad.mit.edu	37	chr8	97614558	97614558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaacgtcaggcaatagtGcctgataatggagacatctg	11	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97614558	T	T	97614558	1	4	168	0	1	0	0	0	0	0	0	0	14065	1334	46	3		3	SDC2	8	97614558	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	307151	97614558	48749464	1013	138004											
POP1	10940	broad.mit.edu	37	chr8	99169968	99169968	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagaggcttgcctgtccatCttgggccacttccccagggc	12	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99169968	G	G	99169968	3	3	168	1	0	0	0	0	1	0	0	0	12346	903	32	4	2602	4	POP1	8	99169968	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1555410	99169968	47194054	1014	138005											
FBXO43	286151	broad.mit.edu	37	chr8	101153930	101153930	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaatatttttttctaagttGataacttggcttatactact	6	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101153930	T	T	101153930	2	4	168	1	0	0	0	0	0	0	0	1	5809	1280	45	3		3	FBXO43	8	101153930	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1983962	101153930	45210092	1015	138006											
BAALC	79870	broad.mit.edu	37	chr8	104240321	104240321	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaatcacaaagaactgtgtCaactagcagagagtccaagc	9	9	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104240321	A	A	104240321	2	1	168	1	0	0	0	0	0	0	0	1	1284	813	29	3		3	BAALC	8	104240321	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3086391	104240321	42123701	1016	138007											
DCAF13	25879	broad.mit.edu	37	chr8	104426970	104426970	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggagatccagttcgggctGacagtgagaggatgcagccc	16	9	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104426970	A	A	104426970	1	1	168	0	1	0	0	0	0	0	0	0	4299	1305	45	4		4	DCAF13	8	104426970	5'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	186649	104426970	41937052	1017	138008											
RIMS2	9699	broad.mit.edu	37	chr8	104831624	104831624	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtttttacagagctcagGagaaatatggaacttgattg	10	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104831624	T	T	104831624	1	4	168	0	1	0	0	0	0	0	0	0	13479	1189	41	3		3	RIMS2	8	104831624	5'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	404654	104831624	41532398	1018	138009											
RIMS2	9699	broad.mit.edu	37	chr8	104987691	104987691	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcgagtagatgttataGgaaggactagatcatggtca	11	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104987691	A	A	104987691	3	1	168	1	0	0	0	0	1	0	0	0	13479	1001	35	4	3072	4	RIMS2	8	104987691	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	156067	104987691	41376331	1019	138010											
TM7SF4	81501	broad.mit.edu	37	chr8	105367344	105367344	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccaatatctgcatgcaaaGctgcttaaaaaaagatcaaa	5	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105367344	A	A	105367344	2	1	168	1	0	0	0	0	0	0	0	1	16099	962	34	4		4	TM7SF4	8	105367344	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	379653	105367344	40996678	1020	138011											
ZFPM2	23414	broad.mit.edu	37	chr8	106813429	106813429	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactgccatttcggcttccaGactcagagggagttattgca	10	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106813429	A	A	106813429	2	1	168	1	0	0	0	0	0	0	0	1	17784	933	33	4		4	ZFPM2	8	106813429	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1446085	106813429	39550593	1021	138012											
NUDCD1	84955	broad.mit.edu	37	chr8	110255470	110255470	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcactcacaaagggctgcaTacgagtaatttggagcacag	12	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110255470	A	A	110255470	3	1	168	1	0	0	0	0	1	0	0	0	10817	1406	49	5	235	5	NUDCD1	8	110255470	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	3442041	110255470	36108552	1022	138013											
NUDCD1	84955	broad.mit.edu	37	chr8	110257660	110257660	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacagaagcagggcatttcTttaggatccactatgacaga	9	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110257660	A	A	110257660	3	1	168	1	0	0	0	0	1	0	0	0	10817	1606	56	5	409	5	NUDCD1	8	110257660	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	2190	110257660	36106362	1023	138014											
PKHD1L1	93035	broad.mit.edu	37	chr8	110412648	110412648	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatgtatcttactctaaatCaaaacgaatgaacattttta	3	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110412648	T	T	110412648	1	4	168	0	1	0	0	0	0	0	0	0	12067	841	29	4		4	PKHD1L1	8	110412648	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	154988	110412648	35951374	1024	138015											
PKHD1L1	93035	broad.mit.edu	37	chr8	110535564	110535564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttagtggaaatacaacaattCcgtttagcagctgttgggcc	10	8	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110535564	A	A	110535564	3	1	168	1	0	0	0	0	1	0	0	0	12067	855	30	3	12735	3	PKHD1L1	8	110535564	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	122916	110535564	35828458	1025	138016											
CSMD3	114788	broad.mit.edu	37	chr8	113529425	113529425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccattcatggggacccCtgggtcacgacacgcagtgg	13	13	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113529425	A	A	113529425	3	1	168	1	0	0	0	0	1	0	0	0	3980	681	24	2	6705	2	CSMD3	8	113529425	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2993861	113529425	32834597	1026	138017											
CSMD3	114788	broad.mit.edu	37	chr8	113564886	113564886	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggttattgtcatatggaAaaggatagccaggagataag	13	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113564886	T	T	113564886	3	4	168	1	0	0	0	0	1	0	0	0	3980	14	1	5	7009	5	CSMD3	8	113564886	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	35461	113564886	32799136	1027	138018											
CSMD3	114788	broad.mit.edu	37	chr8	113668524	113668524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggtgacagaagatttgGcccatcatgaacttccagaa	10	9	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113668524	T	T	113668524	3	4	168	1	0	0	0	0	1	0	0	0	3980	1203	42	3	8476	3	CSMD3	8	113668524	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	103638	113668524	32695498	1028	138019											
CSMD3	114788	broad.mit.edu	37	chr8	113678505	113678505	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaaaaatatttgtgagaCctttcaaatgtaattttgat	7	3	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113678505	A	A	113678505	5	1	168	1	0	0	0	0	0	0	1	0	3980	521	18	3	8526	3	CSMD3	8	113678505	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	9981	113678505	32685517	1029	138020											
CSMD3	114788	broad.mit.edu	37	chr8	113697770	113697770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaagaattggggattctgGagagtcaccatctttaacag	10	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113697770	T	T	113697770	3	4	168	1	0	0	0	0	1	0	0	0	3980	1174	41	3	9004	3	CSMD3	8	113697770	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	19265	113697770	32666252	1030	138021											
CSMD3	114788	broad.mit.edu	37	chr8	113812517	113812517	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtcagcctaaaaagagatgGacaaagaagggagagatggg	15	4	1	3	rs59464748	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113812517	T	T	113812517	1	4	168	0	1	0	0	0	0	0	0	0	3980	1189	41	3		3	CSMD3	8	113812517	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	114747	113812517	32551505	1031	138022											
CSMD3	114788	broad.mit.edu	37	chr8	113933898	113933898	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actccaagcagcaaaaacttCagctatccgttgacaggtga	8	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113933898	T	T	113933898	3	4	168	1	0	0	0	0	1	0	0	0	3980	835	29	4	9780	4	CSMD3	8	113933898	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	121381	113933898	32430124	1032	138023											
CSMD3	114788	broad.mit.edu	37	chr8	114186069	114186069	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtagcggatcttgtcCccgacgtcgaatcttgtgcc	11	13	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114186069	A	A	114186069	2	1	168	1	0	0	0	0	0	0	0	1	3980	610	22	2		2	CSMD3	8	114186069	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	252171	114186069	32177953	1033	138024											
TRPS1	7227	broad.mit.edu	37	chr8	116427058	116427058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggctgctgagcagaatgGcttttagtcaatgaaccctg	11	9	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116427058	T	T	116427058	3	4	168	1	0	0	0	0	1	0	0	0	16718	1194	42	3	810	3	TRPS1	8	116427058	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2240989	116427058	29936964	1034	138025											
TRPS1	7227	broad.mit.edu	37	chr8	116599370	116599370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagccaagccataaataggtCgcgccagatgggcggcctcc	12	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116599370	A	A	116599370	3	1	168	1	0	0	0	0	1	0	0	0	16718	884	31	3	1338	3	TRPS1	8	116599370	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	172312	116599370	29764652	1035	138026											
COL14A1	7373	broad.mit.edu	37	chr8	121224717	121224717	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagagacccacacagatattGaattgagtgggttgttgccc	12	8	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121224717	T	T	121224717	4	4	168	1	0	0	0	0	0	1	0	0	3703	1291	45	3	1544	3	COL14A1	8	121224717	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4625347	121224717	25139305	1036	138027											
COL14A1	7373	broad.mit.edu	37	chr8	121328190	121328190	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttctacacagggtatccCaggaggcgttggttcaccag	12	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121328190	T	T	121328190	3	4	168	1	0	0	0	0	1	0	0	0	3703	594	21	4	4767	4	COL14A1	8	121328190	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	103473	121328190	25035832	1037	138028											
SNTB1	6641	broad.mit.edu	37	chr8	121823892	121823892	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgcagaacgagccattGgtggcggtcccgatgccgtt	13	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121823892	A	A	121823892	2	1	168	1	0	0	0	0	0	0	0	1	14986	1335	47	4		4	SNTB1	8	121823892	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	495702	121823892	24540130	1038	138029											
HAS2	3037	broad.mit.edu	37	chr8	122640887	122640887	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatgggctatagcatatgActggacagatacaaaagcgg	13	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122640887	T	T	122640887	1	4	168	0	1	0	0	0	0	0	0	0	7028	290	10	5		5	HAS2	8	122640887	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	816995	122640887	23723135	1039	138030											
ZHX1	11244	broad.mit.edu	37	chr8	124265929	124265929	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccgcccacgcggtcttcctCttccccgtcctttgggtctc	9	19	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124265929	A	A	124265929	3	1	168	1	0	0	0	0	1	0	0	0	17801	913	32	3	367	3	ZHX1	8	124265929	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1625042	124265929	22098093	1040	138031											
ANXA13	312	broad.mit.edu	37	chr8	124696882	124696882	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgactatgcgaatcaacgTctcctcatcggtccccgcac	7	17	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124696882	A	A	124696882	3	1	168	1	0	0	0	0	1	0	0	0	717	1667	58	5	159	5	ANXA13	8	124696882	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	430953	124696882	21667140	1041	138032											
FER1L6	654463	broad.mit.edu	37	chr8	124985586	124985586	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatggccaaactccactgtGctccagacagggtcaaagct	10	12	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124985586	A	A	124985586	1	1	168	0	1	0	0	0	0	0	0	0	5872	1334	46	4		4	FER1L6	8	124985586	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	288704	124985586	21378436	1042	138033											
FER1L6	654463	broad.mit.edu	37	chr8	125081775	125081775	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatgctcagcaatgaggtTctgtcagtgctttggtcaac	13	8	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125081775	C	C	125081775	1	2	168	0	1	0	0	0	0	0	0	0	5872	1798	62	5		5	FER1L6	8	125081775	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	96189	125081775	21282247	1043	138034											
RNF139	11236	broad.mit.edu	37	chr8	125498688	125498688	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaatgaaactgattccttCtttatttcttgggatgattt	7	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125498688	T	T	125498688	2	4	168	1	0	0	0	0	0	0	0	1	13553	912	32	4		4	RNF139	8	125498688	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	416913	125498688	20865334	1044	138035											
TG	7038	broad.mit.edu	37	chr8	133881926	133881926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgggagccggcatgtgGctttgggggcccatcccagg	18	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133881926	T	T	133881926	1	4	168	0	1	0	0	0	0	0	0	0	15936	1218	42	3		3	TG	8	133881926	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	8383238	133881926	12482096	1045	138036											
COL22A1	169044	broad.mit.edu	37	chr8	139707001	139707001	+	Intron	DEL	G	-	-													cacggtgcagatctacagctGgtcagcctttggagtccggg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139707001	-	-	139707001	6	5	168	0	1	1	0	1	0	0	0	0	3713	1363	47	0		0	COL22A1	8	139707001	Intron	DEL	G	TCGA-50-6590-01A-12D-1855-08	5825075	139707001	6657021	1046	138037											
COL22A1	169044	broad.mit.edu	37	chr8	139767336	139767336	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgccgggaatgactctgatCttccaaacccattggtaaga	10	11	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139767336	A	A	139767336	1	1	168	0	1	0	0	0	0	0	0	0	3713	928	32	3		3	COL22A1	8	139767336	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	60335	139767336	6596686	1047	138038											
COL22A1	169044	broad.mit.edu	37	chr8	139815024	139815024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctgccaggtattcagcCcacacttgctgatttgcatg	9	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139815024	A	A	139815024	1	1	168	0	1	0	0	0	0	0	0	0	3713	638	22	2		2	COL22A1	8	139815024	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	47688	139815024	6548998	1048	138039											
COL22A1	169044	broad.mit.edu	37	chr8	139815132	139815132	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccacatcacctttctctcCcttaggtccaggagcgccaa	6	17	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139815132	T	T	139815132	3	4	168	1	0	0	0	0	1	0	0	0	3713	632	22	4	3560	4	COL22A1	8	139815132	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	108	139815132	6548890	1049	138040											
FLJ43860	389690	broad.mit.edu	37	chr8	142505442	142505442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagctgtccccacctctGggttgtctatgaagtagtcg	10	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142505442	T	T	142505442	3	4	168	1	0	0	0	0	1	0	0	0	5987	1348	47	2	3664	2	FLJ43860	8	142505442	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2690310	142505442	3858580	1050	138041											
CYP11B1	1584	broad.mit.edu	37	chr8	143956510	143956510	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgctgggggttatagcgctCaggcctcgggaacaaggcgg	18	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143956510	G	G	143956510	3	3	168	1	0	0	0	0	1	0	0	0	4178	835	29	4	258	4	CYP11B1	8	143956510	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1451068	143956510	2407512	1051	138042											
PLEC	5339	broad.mit.edu	37	chr8	144998619	144998619	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctccgcctcggcccgctgCcgcgccgcgtcttcctcggc	12	22	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144998619	A	A	144998619	2	1	168	1	0	0	0	0	0	0	0	1	12147	726	26	3		3	PLEC	8	144998619	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1042109	144998619	1365403	1052	138043											
SHARPIN	81858	broad.mit.edu	37	chr8	145157929	145157929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggctattccaaattgtaAttgtatccattacagggcac	7	9	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145157929	G	G	145157929	1	3	168	0	1	0	0	0	0	0	0	0	14380	116	4	5		5	SHARPIN	8	145157929	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	159310	145157929	1206093	1053	138044											
MFSD3	113655	broad.mit.edu	37	chr8	145736023	145736023	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcggtgctgcgcttccgcctCgggggcctagcctgtcagac	14	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145736023	T	T	145736023	2	4	168	1	0	0	0	0	0	0	0	1	9625	871	31	4		4	MFSD3	8	145736023	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	578094	145736023	627999	1054	138045											
FOXD4	2298	broad.mit.edu	37	chr9	116735	116735	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgggattcagatgcacaCgcccagtatgggccgcgcaa	13	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116735	A	A	116735	1	1	168	0	1	0	0	0	0	0	0	0	6057	551	19	3		3	FOXD4	9	116735	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08		116735	141096696	1055	138046											
DOCK8	81704	broad.mit.edu	37	chr9	429660	429660	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acggtccagaaagtgtatcaAactgccaagtgatgcctaat	9	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	429660	T	T	429660	1	4	168	0	1	0	0	0	0	0	0	0	4733	29	1	5		5	DOCK8	9	429660	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	312925	429660	140783771	1056	138047											
SMARCA2	6595	broad.mit.edu	37	chr9	2088462	2088462	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgtatgaaacatccttttCtttaaaaaatcaaattcata	2	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2088462	T	T	2088462	1	4	168	0	1	0	0	0	0	0	0	0	14883	928	32	4		4	SMARCA2	9	2088462	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1658802	2088462	139124969	1057	138048											
JAK2	3717	broad.mit.edu	37	chr9	5072540	5072540	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagatttttaaaggcgtaCgaagagaagtaggagactac	11	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5072540	G	G	5072540	3	3	168	1	0	0	0	0	1	0	0	0	8008	528	19	4	1732	4	JAK2	9	5072540	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2984078	5072540	136140891	1058	138049											
PTPRD	5789	broad.mit.edu	37	chr9	8331774	8331774	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catacccggccgcaaaggaaGacgccaggaggattcagcaa	12	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8331774	T	T	8331774	1	4	168	0	1	0	0	0	0	0	0	0	12907	957	33	3		3	PTPRD	9	8331774	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3259234	8331774	132881657	1059	138050											
PTPRD	5789	broad.mit.edu	37	chr9	8499732	8499732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacataatgcacctgatatCctcttatctggccatgctgt	6	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8499732	A	A	8499732	3	1	168	1	0	0	0	0	1	0	0	0	12907	855	30	3	3657	3	PTPRD	9	8499732	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	167958	8499732	132713699	1060	138051											
TTC39B	158219	broad.mit.edu	37	chr9	15177782	15177782	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttaagtaacttcactaagCactcatcatccacagagaag	5	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15177782	T	T	15177782	3	4	168	1	0	0	0	0	1	0	0	0	16834	710	25	4	306	4	TTC39B	9	15177782	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	6678050	15177782	126035649	1061	138052											
C9orf93	203238	broad.mit.edu	37	chr9	15666171	15666171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtccggtagttacggattcGagaccttgaaggagctttgc	13	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15666171	T	T	15666171	3	4	168	1	0	0	0	0	1	0	0	0	2532	1058	37	3	956	3	C9orf93	9	15666171	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	488389	15666171	125547260	1062	138053											
CNTLN	54875	broad.mit.edu	37	chr9	17235809	17235809	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtgttgacttgtacatAgttttgtgggactgttgctt	13	4	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17235809	T	T	17235809	1	4	168	0	1	0	0	0	0	0	0	0	3671	435	15	5		5	CNTLN	9	17235809	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1569638	17235809	123977622	1063	138054											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18504971	18504971	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtaagtcctgcacccgTtgggggtctttgtgagaacc	13	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18504971	A	A	18504971	1	1	168	0	1	0	0	0	0	0	0	0	274	1740	60	5		5	ADAMTSL1	9	18504971	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1269162	18504971	122708460	1064	138055											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18718409	18718409	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttcaacttgctttctatAagaatcttctatcataggac	4	9	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18718409	G	G	18718409	1	3	168	0	1	0	0	0	0	0	0	0	274	377	13	5		5	ADAMTSL1	9	18718409	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	213438	18718409	122495022	1065	138056											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18817158	18817158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatcaacacggagaagcCtgcagtcacagtcgatatag	11	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18817158	A	A	18817158	3	1	168	1	0	0	0	0	1	0	0	0	274	681	24	2	3943	2	ADAMTSL1	9	18817158	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	98749	18817158	122396273	1066	138057											
KIAA1797	54914	broad.mit.edu	37	chr9	20764905	20764905	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaaataatggcaccatttCtgtggtatctgtattgtgaa	8	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20764905	G	G	20764905	3	3	168	1	0	0	0	0	1	0	0	0	8328	912	32	4	554	4	KIAA1797	9	20764905	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1947747	20764905	120448526	1067	138058											
IFNA6	3443	broad.mit.edu	37	chr9	21350557	21350557	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagctgctggtaaagttcAgtatagagtttgtctagaag	11	5	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21350557	T	T	21350557	2	4	168	1	0	0	0	0	0	0	0	1	7611	175	7	5		5	IFNA6	9	21350557	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	585652	21350557	119862874	1068	138059											
TAF1L	138474	broad.mit.edu	37	chr9	32632340	32632340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacattcctctttgtaacGctcttgatgctcagccacag	7	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32632340	T	T	32632340	3	4	168	1	0	0	0	0	1	0	0	0	15642	1087	38	3	2246	3	TAF1L	9	32632340	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	11281783	32632340	108581091	1069	138060											
NFX1	4799	broad.mit.edu	37	chr9	33332521	33332521	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatgactggggtggggcatGagggaatttctggggtgaaa	19	3	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33332521	A	A	33332521	1	1	168	0	1	0	0	0	0	0	0	0	10482	1305	45	4		4	NFX1	9	33332521	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	700181	33332521	107880910	1070	138061											
CNTFR	1271	broad.mit.edu	37	chr9	34556267	34556267	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcacatgctgccactggtCcaggatgaggggtcggtagc	14	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34556267	A	A	34556267	3	1	168	1	0	0	0	0	1	0	0	0	3670	855	30	3	380	3	CNTFR	9	34556267	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1223746	34556267	106657164	1071	138062											
FOXD4L5	653427	broad.mit.edu	37	chr9	70177795	70177795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcgcaaccccgccccaCcgggccacctgcagccccgg	12	21	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70177795	A	A	70177795	2	1	168	1	0	0	0	0	0	0	0	1	6062	494	18	3		3	FOXD4L5	9	70177795	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	35621528	70177795	71035636	1072	138063											
PGM5	5239	broad.mit.edu	37	chr9	71098889	71098889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagtttgctgtggggagCcatgtctacagcgtggcgaa	15	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71098889	A	A	71098889	3	1	168	1	0	0	0	0	1	0	0	0	11896	738	26	3	1438	3	PGM5	9	71098889	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	921094	71098889	70114542	1073	138064											
APBA1	320	broad.mit.edu	37	chr9	72071250	72071250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccacgttctcctgggaGttggagcgaggcatccgccg	14	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72071250	T	T	72071250	3	4	168	1	0	0	0	0	1	0	0	0	758	1020	36	3	836	3	APBA1	9	72071250	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	972361	72071250	69142181	1074	138065											
PRUNE2	158471	broad.mit.edu	37	chr9	79259661	79259661	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagctcgactacctccgtGagaaatgactctcctgtagg	10	12	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79259661	T	T	79259661	3	4	168	1	0	0	0	0	1	0	0	0	12747	1290	45	3	576	3	PRUNE2	9	79259661	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	7188411	79259661	61953770	1075	138066											
PRUNE2	158471	broad.mit.edu	37	chr9	79321012	79321012	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaggccagctgcccacCctcttgaaagttgccatgta	11	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79321012	A	A	79321012	3	1	168	1	0	0	0	0	1	0	0	0	12747	623	22	2	3136	2	PRUNE2	9	79321012	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	61351	79321012	61892419	1076	138067											
FOXB2	442425	broad.mit.edu	37	chr9	79635338	79635338	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcggccgccgccgctgcCgccgcggccgcggcgtccac	16	21	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79635338	A	A	79635338	2	1	168	1	0	0	0	0	0	0	0	1	6051	639	23	1		1	FOXB2	9	79635338	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	314326	79635338	61578093	1077	138068											
UBQLN1	29979	broad.mit.edu	37	chr9	86292810	86292810	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatctctattttctgtacGggaaggttgactaccttcac	9	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86292810	A	A	86292810	3	1	168	1	0	0	0	0	1	0	0	0	17022	1116	39	4	856	4	UBQLN1	9	86292810	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	6657472	86292810	54920621	1078	138069											
ROR2	4920	broad.mit.edu	37	chr9	94495713	94495713	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacgtgccgatcatggtgaAggccgctgcagagcccgcga	15	12	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94495713	G	G	94495713	3	3	168	1	0	0	0	0	1	0	0	0	13638	72	3	5	2219	5	ROR2	9	94495713	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	8202903	94495713	46717718	1079	138070											
FGD3	89846	broad.mit.edu	37	chr9	95797930	95797930	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgctgtcctgggaggtGgtgttggaggccccatgaag	17	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95797930	C	C	95797930	1	2	168	0	1	0	0	0	0	0	0	0	5891	1363	47	4		4	FGD3	9	95797930	3'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	1302217	95797930	45415501	1080	138071											
FANCC	2176	broad.mit.edu	37	chr9	97876976	97876976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcagtgtctggagccaGtgtccccgagggatatctgc	13	11	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97876976	T	T	97876976	3	4	168	1	0	0	0	0	1	0	0	0	5721	1020	36	3	603	3	FANCC	9	97876976	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2079046	97876976	43336455	1081	138072											
CTSL2	1515	broad.mit.edu	37	chr9	99800108	99800108	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttattgcctggtaaggtcTggtgtctagaagctactctc	12	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99800108	A	A	99800108	1	1	168	0	1	0	0	0	0	0	0	0	4073	1595	55	5		5	CTSL2	9	99800108	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1923132	99800108	41413323	1082	138073											
GABBR2	9568	broad.mit.edu	37	chr9	101151282	101151282	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgtcttttggtggttcGgatcctagaggatcaagaga	13	6	3	2	rs55677951		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101151282	T	T	101151282	2	4	168	1	0	0	0	0	0	0	0	1	6216	1103	39	1		1	GABBR2	9	101151282	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1351174	101151282	40062149	1083	138074											
ABCA1	19	broad.mit.edu	37	chr9	107589502	107589502	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcaacaatcccaagcactCacttgtatgatctacagaaa	4	13	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107589502	A	A	107589502	1	1	168	0	1	0	0	0	0	0	0	0	28	841	29	3		3	ABCA1	9	107589502	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	6438220	107589502	33623929	1084	138075											
TMEM38B	55151	broad.mit.edu	37	chr9	108522820	108522820	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttctacctctcaagctgcAgttacagaacttatagaaaa	6	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108522820	T	T	108522820	1	4	168	0	1	0	0	0	0	0	0	0	16283	203	7	5		5	TMEM38B	9	108522820	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	933318	108522820	32690611	1085	138076											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112687384	112687384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtgctctctgccccgacTgtagatgaatgttttaatcc	8	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112687384	C	C	112687384	1	2	168	0	1	0	0	0	0	0	0	0	11504	1595	55	5		5	PALM2-AKAP2	9	112687384	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	4164564	112687384	28526047	1086	138077											
HSDL2	84263	broad.mit.edu	37	chr9	115216466	115216466	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggactgcatctggtaatctGaagtttttatgaaacaaaat	8	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115216466	A	A	115216466	1	1	168	0	1	0	0	0	0	0	0	0	7461	1305	45	4		4	HSDL2	9	115216466	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2529082	115216466	25996965	1087	138078											
RGS3	5998	broad.mit.edu	37	chr9	116247969	116247969	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggaacagggccagccagTccaggtgaggagagctgctg	17	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116247969	G	G	116247969	3	3	168	1	0	0	0	0	1	0	0	0	13415	1667	58	5	794	5	RGS3	9	116247969	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1031503	116247969	24965462	1088	138079											
DFNB31	25861	broad.mit.edu	37	chr9	117165376	117165376	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccggaagagcaaaggtgacAtaagcctaggtctgcccttg	12	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117165376	T	T	117165376	1	4	168	0	1	0	0	0	0	0	0	0	4495	232	8	5		5	DFNB31	9	117165376	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	917407	117165376	24048055	1089	138080											
DFNB31	25861	broad.mit.edu	37	chr9	117170260	117170260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagggcgttgatattgccCtggacagcctcgccagtttc	14	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117170260	A	A	117170260	3	1	168	1	0	0	0	0	1	0	0	0	4495	680	24	2	1078	2	DFNB31	9	117170260	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4884	117170260	24043171	1090	138081											
PAPPA	5069	broad.mit.edu	37	chr9	119065173	119065173	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catccaatgcttcagtatctCatcaagaccagcaatgccca	5	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119065173	A	A	119065173	3	1	168	1	0	0	0	0	1	0	0	0	11526	826	29	3	3129	3	PAPPA	9	119065173	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1894913	119065173	22148258	1091	138082											
TLR4	7099	broad.mit.edu	37	chr9	120470840	120470840	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcatgtgtaatcattgcaGgtggttcctaatattactta	8	6	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120470840	T	T	120470840	5	4	168	1	0	0	0	0	0	0	1	0	16076	1014	35	2	99	2	TLR4	9	120470840	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	1405667	120470840	20742591	1092	138083											
C5	727	broad.mit.edu	37	chr9	123779771	123779771	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctggagaatatgcatctgCatcaggagacagatgaacct	11	9	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123779771	G	G	123779771	3	3	168	1	0	0	0	0	1	0	0	0	2303	710	25	4	3407	4	C5	9	123779771	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3308931	123779771	17433660	1093	138084											
STRBP	55342	broad.mit.edu	37	chr9	125898293	125898293	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaacatttttcacaggttCtgcaaaggtttaatgtttac	6	7	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125898293	G	G	125898293	1	3	168	0	1	0	0	0	0	0	0	0	15445	928	32	4		4	STRBP	9	125898293	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2118522	125898293	15315138	1094	138085											
OLFML2A	169611	broad.mit.edu	37	chr9	127572612	127572612	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcctacaccacccagatcgActacaaccccaaggagcggg	9	17	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127572612	G	G	127572612	3	3	168	1	0	0	0	0	1	0	0	0	10952	275	10	5	1910	5	OLFML2A	9	127572612	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1674319	127572612	13640819	1095	138086											
SCAI	286205	broad.mit.edu	37	chr9	127818240	127818240	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctccctgtgggatatcatCttcagcacctccagaggaca	8	14	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127818240	T	T	127818240	3	4	168	1	0	0	0	0	1	0	0	0	13981	913	32	4	1739	4	SCAI	9	127818240	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	245628	127818240	13395191	1096	138087											
SLC27A4	10999	broad.mit.edu	37	chr9	131105460	131105460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgttctccaagctgGtgctgaaactgccctggacc	11	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131105460	T	T	131105460	3	4	168	1	0	0	0	0	1	0	0	0	14642	1261	44	3	51	3	SLC27A4	9	131105460	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3287220	131105460	10107971	1097	138088											
SPTAN1	6709	broad.mit.edu	37	chr9	131367432	131367432	+	Frame_Shift_Del	DEL	G	-	-													caagcatgagggcttcgagaGggaccttgcggctctcggtg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131367432	-	-	131367432	7	5	168	1	0	1	0	1	0	0	0	0	15235	1000	35	0	3953	0	SPTAN1	9	131367432	Frame_Shift_Del	DEL	G	TCGA-50-6590-01A-12D-1855-08	261972	131367432	9845999	1098	138089											
LAMC3	10319	broad.mit.edu	37	chr9	133944389	133944389	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtcacaggccaggcctgtGacaggtgccagctgggtttc	15	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133944389	T	T	133944389	3	4	168	1	0	0	0	0	1	0	0	0	8688	1290	45	3	2904	3	LAMC3	9	133944389	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2576957	133944389	7269042	1099	138090											
TTF1	7270	broad.mit.edu	37	chr9	135277293	135277293	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggccgggattcctgcatatCagccccaacctcactgccca	8	17	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135277293	G	G	135277293	3	3	168	1	0	0	0	0	1	0	0	0	16844	826	29	4	1841	4	TTF1	9	135277293	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1332904	135277293	5936138	1100	138091											
C9orf9	11092	broad.mit.edu	37	chr9	135762991	135762991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgctcttgaggccccGtgtgtgcctgtggggaggcc	17	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135762991	T	T	135762991	1	4	168	0	1	0	0	0	0	0	0	0	2530	1160	40	3		3	C9orf9	9	135762991	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	485698	135762991	5450440	1101	138092											
GFI1B	8328	broad.mit.edu	37	chr9	135862119	135862119	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcacacctaccaccagccCcgtgtgcaggaagatgaacc	9	16	1	2	rs140302929	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135862119	T	T	135862119	2	4	168	1	0	0	0	0	0	0	0	1	6404	610	22	4		4	GFI1B	9	135862119	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	99128	135862119	5351312	1102	138093											
SARDH	1757	broad.mit.edu	37	chr9	136570127	136570127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccagccatgccgctcctgGaacacgcagccttgtccaag	9	17	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136570127	T	T	136570127	3	4	168	1	0	0	0	0	1	0	0	0	13953	1165	41	3	1299	3	SARDH	9	136570127	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	708008	136570127	4643304	1103	138094											
SOHLH1	402381	broad.mit.edu	37	chr9	138586174	138586174	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggcctgagtcccaattccCcagctcatatcaggtgctta	8	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138586174	T	T	138586174	1	4	168	0	1	0	0	0	0	0	0	0	15037	638	22	4		4	SOHLH1	9	138586174	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	2016047	138586174	2627257	1104	138095											
GRIN1	2902	broad.mit.edu	37	chr9	140040246	140040246	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagcgtgtggtttgagatGatgcgtgtctacagctggaa	14	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140040246	T	T	140040246	3	4	168	1	0	0	0	0	1	0	0	0	6844	1290	45	3	472	3	GRIN1	9	140040246	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1454072	140040246	1173185	1105	138096											
GRIN1	2902	broad.mit.edu	37	chr9	140058239	140058239	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgctggtagctgggggcatCgtggccgggatcttcctgat	16	9	1	1	rs143098819		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140058239	T	T	140058239	2	4	168	1	0	0	0	0	0	0	0	1	6844	874	31	4		4	GRIN1	9	140058239	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	17993	140058239	1155192	1106	138097											
NOXA1	10811	broad.mit.edu	37	chr9	140327640	140327640	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggtagtggctgtgtcagtCttgctctgtcctacagggct	14	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140327640	G	G	140327640	1	3	168	0	1	0	0	0	0	0	0	0	10655	928	32	4		4	NOXA1	9	140327640	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	269401	140327640	885791	1107	138098											
CACNA1B	774	broad.mit.edu	37	chr9	141006957	141006957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtaccaccccataagCgtaagtgtgagggtgagaaa	13	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141006957	A	A	141006957	3	1	168	1	0	0	0	0	1	0	0	0	2565	782	27	3	5690	3	CACNA1B	9	141006957	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	679317	141006957	206474	1108	138099											
IL2RA	3559	broad.mit.edu	37	chr10	6104125	6104126	+	5'UTR	INS	-	T	T													tgaatccatcttcctgacccINSttgggaccagccggggcagt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6104126	T	T	6104125	6	5	168	0	1	1	1	0	0	0	0	0	7756	696	24	0		0	IL2RA	10	6104125	5'UTR	INS	-	TCGA-50-6590-01A-12D-1855-08		6104125	129430622	1109	138100											
ITIH5	80760	broad.mit.edu	37	chr10	7618544	7618544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcttcatggaggtgaagGgagtgaggaagcggtagctc	17	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7618544	T	T	7618544	3	4	168	1	0	0	0	0	1	0	0	0	7977	1232	43	2	1121	2	ITIH5	10	7618544	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1514419	7618544	127916203	1110	138101											
ITIH5	80760	broad.mit.edu	37	chr10	7697524	7697524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggatctgcaagcaaagtGgatacctggttcaaaataaa	11	6	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7697524	T	T	7697524	1	4	168	0	1	0	0	0	0	0	0	0	7977	1363	47	2		2	ITIH5	10	7697524	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	78980	7697524	127837223	1111	138102											
CAMK1D	57118	broad.mit.edu	37	chr10	12595110	12595110	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggataaaagtaacagtaatgCttacaactgtgccgtcgtta	9	7	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12595110	G	G	12595110	1	3	168	0	1	0	0	0	0	0	0	0	2623	812	28	4		4	CAMK1D	10	12595110	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4897586	12595110	122939637	1112	138103											
OPTN	10133	broad.mit.edu	37	chr10	13166046	13166046	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtgacatctctgtttaagGagcttcaagaggctcataca	10	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13166046	A	A	13166046	3	1	168	1	0	0	0	0	1	0	0	0	10983	1175	41	4	960	4	OPTN	10	13166046	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	570936	13166046	122368701	1113	138104											
FAM107B	83641	broad.mit.edu	37	chr10	14765939	14765939	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccatcacttttccttttaTagatgtgctgttccatttgg	7	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14765939	C	C	14765939	1	2	168	0	1	0	0	0	0	0	0	0	5436	1421	49	5		5	FAM107B	10	14765939	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1599893	14765939	120768808	1114	138105											
ITGA8	8516	broad.mit.edu	37	chr10	15649534	15649534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaggagagtatttgacCctaaaataaagtttcctgct	8	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15649534	A	A	15649534	1	1	168	0	1	0	0	0	0	0	0	0	7952	638	22	2		2	ITGA8	10	15649534	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	883595	15649534	119885213	1115	138106											
RSU1	6251	broad.mit.edu	37	chr10	16823921	16823921	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaaagtaaactaaggtttCtgcaaataatcattcttcat	4	8	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16823921	A	A	16823921	1	1	168	0	1	0	0	0	0	0	0	0	13827	928	32	3		3	RSU1	10	16823921	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1174387	16823921	118710826	1116	138107											
CUBN	8029	broad.mit.edu	37	chr10	16870770	16870770	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcattattgtctaaaaataAcaaatgggaatataaaatgt	5	4	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16870770	G	G	16870770	1	3	168	0	1	0	0	0	0	0	0	0	4084	58	2	5		5	CUBN	10	16870770	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	46849	16870770	118663977	1117	138108											
ST8SIA6	338596	broad.mit.edu	37	chr10	17363209	17363209	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttttgtcttgctttagactCttcgagcgtgtagtatactt	8	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17363209	A	A	17363209	4	1	168	1	0	0	0	0	0	1	0	0	15354	922	32	3	335	3	ST8SIA6	10	17363209	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	492439	17363209	118171538	1118	138109											
STAM	8027	broad.mit.edu	37	chr10	17702489	17702489	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaccagcgagatgaatactGctgaggactggggcctcatt	12	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17702489	C	C	17702489	3	2	168	1	0	0	0	0	1	0	0	0	15366	1319	46	4	73	4	STAM	10	17702489	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	339280	17702489	117832258	1119	138110											
MRC1	4360	broad.mit.edu	37	chr10	17949691	17949691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcactgttcttcctacaaagGatatatttgtaaaagaccaa	5	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17949691	T	T	17949691	3	4	168	1	0	0	0	0	1	0	0	0	9850	1174	41	3	4165	3	MRC1	10	17949691	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	247202	17949691	117585056	1120	138111											
PLXDC2	84898	broad.mit.edu	37	chr10	20290747	20290747	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttccctcacacagaggaGgaggtggaagttgattcaca	12	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20290747	T	T	20290747	3	4	168	1	0	0	0	0	1	0	0	0	12213	991	35	2	162	2	PLXDC2	10	20290747	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2341056	20290747	115244000	1121	138112											
PLXDC2	84898	broad.mit.edu	37	chr10	20290762	20290762	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggtggaagttgaTtcacacgcgtacagccacag	15	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20290762	A	A	20290762	3	1	168	1	0	0	0	0	1	0	0	0	12213	1490	52	5	177	5	PLXDC2	10	20290762	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	15	20290762	115243985	1122	138113											
ARMC3	219681	broad.mit.edu	37	chr10	23290941	23290941	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagttgggcagtgatggtcTgtgctggtgacgagctgacg	17	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23290941	A	A	23290941	3	1	168	1	0	0	0	0	1	0	0	0	956	1580	55	5	1561	5	ARMC3	10	23290941	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	3000179	23290941	112243806	1123	138114											
ARHGAP21	57584	broad.mit.edu	37	chr10	24924047	24924047	+	Intron	DEL	C	-	-													gttttcctgttacagagaagCccaaagcatgattttacttc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24924047	-	-	24924047	6	5	168	0	1	1	0	1	0	0	0	0	873	754	26	0		0	ARHGAP21	10	24924047	Intron	DEL	C	TCGA-50-6590-01A-12D-1855-08	1633106	24924047	110610700	1124	138115											
GPR158	57512	broad.mit.edu	37	chr10	25861626	25861626	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcaacgaattccatatatGactggcggacgggtcatgag	12	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25861626	T	T	25861626	3	4	168	1	0	0	0	0	1	0	0	0	6728	1290	45	3	1589	3	GPR158	10	25861626	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	937579	25861626	109673121	1125	138116											
MYO3A	53904	broad.mit.edu	37	chr10	26462571	26462571	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttagtactgtatattcaAagataatatattttacacag	5	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26462571	T	T	26462571	1	4	168	0	1	0	0	0	0	0	0	0	10170	29	1	5		5	MYO3A	10	26462571	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	600945	26462571	109072176	1126	138117											
ABI1	10006	broad.mit.edu	37	chr10	27112235	27112235	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttttctcttgtctgtagcCtgaaataagaacaaaaacaa	6	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27112235	T	T	27112235	5	4	168	1	0	0	0	0	0	0	1	0	88	695	24	4	1453	4	ABI1	10	27112235	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	649664	27112235	108422512	1127	138118											
BAMBI	25805	broad.mit.edu	37	chr10	28971061	28971061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgttgcttattatgttgGccctgaggatgcttcgaagt	12	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28971061	T	T	28971061	3	4	168	1	0	0	0	0	1	0	0	0	1311	1203	42	3	524	3	BAMBI	10	28971061	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1858826	28971061	106563686	1128	138119											
SVIL	6840	broad.mit.edu	37	chr10	29756823	29756823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgcaagggagaaactccAagagttctttataagtctgg	10	7	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29756823	G	G	29756823	1	3	168	0	1	0	0	0	0	0	0	0	15539	145	5	5		5	SVIL	10	29756823	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	785762	29756823	105777924	1129	138120											
MTPAP	55149	broad.mit.edu	37	chr10	30658234	30658234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgacctatctaaagtgggGggcttaagggtcaggtctca	14	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30658234	T	T	30658234	1	4	168	0	1	0	0	0	0	0	0	0	10050	1247	43	2		2	MTPAP	10	30658234	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	901411	30658234	104876513	1130	138121											
BMS1	9790	broad.mit.edu	37	chr10	43292122	43292122	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgagatgactgatcagtAtatggctgttaagggcatca	12	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43292122	G	G	43292122	3	3	168	1	0	0	0	0	1	0	0	0	1478	449	16	5	1464	5	BMS1	10	43292122	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	12633888	43292122	92242625	1131	138122											
GDF10	2662	broad.mit.edu	37	chr10	48426633	48426633	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagaaccacattccgattCtcatccaggaagaggacccc	7	14	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48426633	G	G	48426633	3	3	168	1	0	0	0	0	1	0	0	0	6375	912	32	4	66	4	GDF10	10	48426633	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	5134511	48426633	87108114	1132	138123											
DRGX	644168	broad.mit.edu	37	chr10	50594780	50594780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttggtccccagggggcGgggagttgatgtttctcact	17	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50594780	T	T	50594780	3	4	168	1	0	0	0	0	1	0	0	0	4803	1116	39	1	443	1	DRGX	10	50594780	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2168147	50594780	84939967	1133	138124											
PRKG1	5592	broad.mit.edu	37	chr10	54011288	54011288	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacgtggtactcgtgtttgCacctctaagaaatttccatt	8	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54011288	A	A	54011288	1	1	168	0	1	0	0	0	0	0	0	0	12628	725	25	3		3	PRKG1	10	54011288	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3416508	54011288	81523459	1134	138125											
DKK1	22943	broad.mit.edu	37	chr10	54074385	54074385	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcagtcagcgccgcgcCgggaatcctgtacccgggcg	14	16	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54074385	A	A	54074385	3	1	168	1	0	0	0	0	1	0	0	0	4584	652	23	1	193	1	DKK1	10	54074385	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	63097	54074385	81460362	1135	138126											
PCDH15	65217	broad.mit.edu	37	chr10	55568489	55568489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttcagagtttgctcctGgcgacttcttttggtttgca	9	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55568489	T	T	55568489	3	4	168	1	0	0	0	0	1	0	0	0	11605	1348	47	2	595	2	PCDH15	10	55568489	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1494104	55568489	79966258	1136	138127											
PCDH15	65217	broad.mit.edu	37	chr10	55569054	55569054	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgcttcctcttggtccaGagtgagtttcaaataatctt	8	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55569054	C	C	55569054	3	2	168	1	0	0	0	0	1	0	0	0	11605	933	33	4	1160	4	PCDH15	10	55569054	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	565	55569054	79965693	1137	138128											
PCDH15	65217	broad.mit.edu	37	chr10	55582436	55582436	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgacattaggttctgattTgagttccacagttcttgaaa	9	6	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55582436	G	G	55582436	3	3	168	1	0	0	0	0	1	0	0	0	11605	1821	63	5	2427	5	PCDH15	10	55582436	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	13382	55582436	79952311	1138	138129											
IPMK	253430	broad.mit.edu	37	chr10	59956169	59956169	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttttgcccactgaagactCtatttttccattagctgtgg	8	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59956169	T	T	59956169	3	4	168	1	0	0	0	0	1	0	0	0	7862	922	32	4	335	4	IPMK	10	59956169	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4373733	59956169	75578578	1139	138130											
ANK3	288	broad.mit.edu	37	chr10	61932654	61932654	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgagctggccctgagcgcTtaccacagtgagttcattgg	12	12	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61932654	C	C	61932654	1	2	168	0	1	0	0	0	0	0	0	0	622	1624	56	5		5	ANK3	10	61932654	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1976485	61932654	73602093	1140	138131											
C10orf107	219621	broad.mit.edu	37	chr10	63519868	63519868	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccctttcccaaatcctctgGaagaaggaatctcatttgat	7	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63519868	A	A	63519868	3	1	168	1	0	0	0	0	1	0	0	0	1592	1175	41	4	354	4	C10orf107	10	63519868	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1587214	63519868	72014879	1141	138132											
JMJD1C	221037	broad.mit.edu	37	chr10	64967837	64967837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaatgcaggcatactgcGgagtgtatttgtagaagaaa	12	4	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64967837	T	T	64967837	3	4	168	1	0	0	0	0	1	0	0	0	8020	1116	39	1	4098	1	JMJD1C	10	64967837	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1447969	64967837	70566910	1142	138133											
CTNNA3	29119	broad.mit.edu	37	chr10	68139031	68139031	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccggcctctgatagcaccCgcagcacggtctaaattatc	9	15	2	1	rs146900023	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68139031	A	A	68139031	2	1	168	1	0	0	0	0	0	0	0	1	4048	639	23	1		1	CTNNA3	10	68139031	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3171194	68139031	67395716	1143	138134											
MYPN	84665	broad.mit.edu	37	chr10	69882003	69882003	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctctggggcaacctcccCggttcactcaaaagttacgg	9	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69882003	T	T	69882003	3	4	168	1	0	0	0	0	1	0	0	0	10192	643	23	4	810	4	MYPN	10	69882003	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1742972	69882003	65652744	1144	138135											
DDX21	9188	broad.mit.edu	37	chr10	70733333	70733333	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacattcatcgatccgggcgGacaggcagagctggaaggac	14	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70733333	T	T	70733333	2	4	168	1	0	0	0	0	0	0	0	1	4382	1161	41	3		3	DDX21	10	70733333	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	851330	70733333	64801414	1145	138136											
HK1	3098	broad.mit.edu	37	chr10	71075622	71075622	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggagtcctggctcaaaaCtctaccacaacctgacactg	8	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71075622	A	A	71075622	1	1	168	0	1	0	0	0	0	0	0	0	7257	580	20	3		3	HK1	10	71075622	5'Flank	SNP	C	TCGA-50-6590-01A-12D-1855-08	342289	71075622	64459125	1146	138137											
HK1	3098	broad.mit.edu	37	chr10	71142152	71142152	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaaaaggaaaagaaaaaaGagttaaagagtggagaaaga	11	0	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71142152	C	C	71142152	1	2	168	0	1	0	0	0	0	0	0	0	7257	957	33	4		4	HK1	10	71142152	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	66530	71142152	64392595	1147	138138											
PLA2G12B	84647	broad.mit.edu	37	chr10	74714370	74714370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataggactcctccgtgtcaGggctcgtgtcgctctgagcc	12	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74714370	T	T	74714370	3	4	168	1	0	0	0	0	1	0	0	0	12086	1000	35	2	529	2	PLA2G12B	10	74714370	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3572218	74714370	60820377	1148	138139											
KIAA0913	23053	broad.mit.edu	37	chr10	75561137	75561137	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgactttgtgaatgcgatcCggagtgcccgcagcgccttc	12	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75561137	A	A	75561137	2	1	168	1	0	0	0	0	0	0	0	1	8270	643	23	1		1	KIAA0913	10	75561137	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	846767	75561137	59973610	1149	138140											
KCNMA1	3778	broad.mit.edu	37	chr10	78674828	78674828	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctagtgggaaggaaacagagGaggaagaaaaatcagagaag	15	3	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78674828	C	C	78674828	1	2	168	0	1	0	0	0	0	0	0	0	8143	1189	41	4		4	KCNMA1	10	78674828	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3113691	78674828	56859919	1150	138141											
TSPAN14	81619	broad.mit.edu	37	chr10	82267187	82267187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggggtacaggctctgctGggcaggattatatgttacct	13	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82267187	T	T	82267187	1	4	168	0	1	0	0	0	0	0	0	0	16763	1363	47	2		2	TSPAN14	10	82267187	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3592359	82267187	53267560	1151	138142											
NRG3	10718	broad.mit.edu	37	chr10	84118523	84118523	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatattccacagagcgatcCgagcacttcaaaccctgccg	7	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84118523	T	T	84118523	2	4	168	1	0	0	0	0	0	0	0	1	10744	639	23	4		4	NRG3	10	84118523	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1851336	84118523	51416224	1152	138143											
NRG3	10718	broad.mit.edu	37	chr10	84118652	84118652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaggccactgatggaaaGggcaggcccgttgcaaggcg	16	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84118652	T	T	84118652	1	4	168	0	1	0	0	0	0	0	0	0	10744	1015	35	2		2	NRG3	10	84118652	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	129	84118652	51416095	1153	138144											
FAM22D	728130	broad.mit.edu	37	chr10	89118103	89118103	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagccaggtcactctctGggtcttacccttggcttttc	11	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89118103	C	C	89118103	2	2	168	1	0	0	0	0	0	0	0	1	5591	1335	47	4		4	FAM22D	10	89118103	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	4999451	89118103	46416644	1154	138145											
PAPSS2	9060	broad.mit.edu	37	chr10	89473906	89473906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagagacgtaaaaggcCtctataaaagggccagagct	11	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89473906	A	A	89473906	3	1	168	1	0	0	0	0	1	0	0	0	11529	681	24	2	501	2	PAPSS2	10	89473906	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	355803	89473906	46060841	1155	138146											
KIF20B	9585	broad.mit.edu	37	chr10	91489016	91489016	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcaatgtaagaatttaAccttgtgttatattaataaa	5	3	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91489016	C	C	91489016	1	2	168	0	1	0	0	0	0	0	0	0	8357	58	2	5		5	KIF20B	10	91489016	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	2015110	91489016	44045731	1156	138147											
KIF20B	9585	broad.mit.edu	37	chr10	91497359	91497359	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttcagcaggaactttctCtttctgaaaaaaagaattta	5	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91497359	G	G	91497359	3	3	168	1	0	0	0	0	1	0	0	0	8357	913	32	4	2715	4	KIF20B	10	91497359	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	8343	91497359	44037388	1157	138148											
IDE	3416	broad.mit.edu	37	chr10	94264609	94264609	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattaagtcaggtctaaattCttccagtaaatattccgctg	6	8	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94264609	T	T	94264609	3	4	168	1	0	0	0	0	1	0	0	0	7563	922	32	4	1747	4	IDE	10	94264609	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2767250	94264609	41270138	1158	138149											
MYOF	26509	broad.mit.edu	37	chr10	95132881	95132881	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaagaggaagcacagccaTggttagtctaaatggagagg	15	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95132881	C	C	95132881	1	2	168	0	1	0	0	0	0	0	0	0	10183	1479	51	5		5	MYOF	10	95132881	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	868272	95132881	40401866	1159	138150											
SORBS1	10580	broad.mit.edu	37	chr10	97096425	97096425	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgttgagatctgagagtctCtgttcagtactcaggcacct	11	9	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97096425	G	G	97096425	3	3	168	1	0	0	0	0	1	0	0	0	15041	912	32	4	466	4	SORBS1	10	97096425	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1963544	97096425	38438322	1160	138151											
TLX1	3195	broad.mit.edu	37	chr10	102896655	102896655	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagcgtcacgtcggtggcGtcggcctgcgagtgagcctg	16	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102896655	T	T	102896655	2	4	168	1	0	0	0	0	0	0	0	1	16082	1132	40	3		3	TLX1	10	102896655	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	5800230	102896655	32638092	1161	138152											
POLL	27343	broad.mit.edu	37	chr10	103344509	103344509	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggttgtgattggtcgccttCtggcttgagggctgtgcaca	15	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103344509	G	G	103344509	3	3	168	1	0	0	0	0	1	0	0	0	12300	912	32	4	1006	4	POLL	10	103344509	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	447854	103344509	32190238	1162	138153											
CNNM2	54805	broad.mit.edu	37	chr10	104678642	104678642	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccgggggagcgcgggctGgggggccccgcgccgccaga	21	15	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104678642	T	T	104678642	2	4	168	1	0	0	0	0	0	0	0	1	3645	1335	47	2		2	CNNM2	10	104678642	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1334133	104678642	30856105	1163	138154											
CALHM2	51063	broad.mit.edu	37	chr10	105209385	105209385	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagccgcacgtcccaggatgGagcttagaaggaggaaggtg	16	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105209385	C	C	105209385	3	2	168	1	0	0	0	0	1	0	0	0	2609	1174	41	4	665	4	CALHM2	10	105209385	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	530743	105209385	30325362	1164	138155											
C10orf79	80217	broad.mit.edu	37	chr10	105920734	105920734	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaaagtagaaaacatttgAaaagatatttaaacagcact	6	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105920734	G	G	105920734	1	3	168	0	1	0	0	0	0	0	0	0	1629	261	9	5		5	C10orf79	10	105920734	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	711349	105920734	29614013	1165	138156											
CCDC147	159686	broad.mit.edu	37	chr10	106139943	106139943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctggaaaaggagcgtgacCggtacatcaaccaagccagt	11	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106139943	A	A	106139943	2	1	168	1	0	0	0	0	0	0	0	1	2807	643	23	1		1	CCDC147	10	106139943	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	219209	106139943	29394804	1166	138157											
CCDC147	159686	broad.mit.edu	37	chr10	106209931	106209931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatttaaagaagaaatacCtcgctcagaaacgtaaagaa	7	6	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106209931	A	A	106209931	3	1	168	1	0	0	0	0	1	0	0	0	2807	681	24	2	2545	2	CCDC147	10	106209931	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	69988	106209931	29324816	1167	138158											
SORCS3	22986	broad.mit.edu	37	chr10	106982903	106982903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcatgttcatctccgagttCcatttgttgccataagaaat	7	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106982903	A	A	106982903	3	1	168	1	0	0	0	0	1	0	0	0	15046	855	30	3	2842	3	SORCS3	10	106982903	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	772972	106982903	28551844	1168	138159											
SORCS3	22986	broad.mit.edu	37	chr10	107012559	107012559	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgtcccagaggaccagatCctcattgccgtgtttcctgg	11	12	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107012559	A	A	107012559	2	1	168	1	0	0	0	0	0	0	0	1	15046	845	30	3		3	SORCS3	10	107012559	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	29656	107012559	28522188	1169	138160											
SORCS1	114815	broad.mit.edu	37	chr10	108412274	108412274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgtactgttcccttaCgccatcagtgcaattattgg	10	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108412274	A	A	108412274	3	1	168	1	0	0	0	0	1	0	0	0	15044	536	19	3	1435	3	SORCS1	10	108412274	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1399715	108412274	27122473	1170	138161											
SORCS1	114815	broad.mit.edu	37	chr10	108431237	108431237	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttagtgtaatgtaaactttGgtagccctctttgtgctaac	8	8	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108431237	C	C	108431237	1	2	168	0	1	0	0	0	0	0	0	0	15044	1363	47	4		4	SORCS1	10	108431237	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	18963	108431237	27103510	1171	138162											
SORCS1	114815	broad.mit.edu	37	chr10	108458987	108458987	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catacctcatagaggtcgatCatgatgttgccctcagggcc	10	12	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108458987	A	A	108458987	3	1	168	1	0	0	0	0	1	0	0	0	15044	826	29	3	2414	3	SORCS1	10	108458987	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	27750	108458987	27075760	1172	138163											
ADD3	120	broad.mit.edu	37	chr10	111885621	111885621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcatctaaagttagtggtgGaacacctatcaaaattgaag	8	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111885621	A	A	111885621	3	1	168	1	0	0	0	0	1	0	0	0	306	1174	41	4	1477	4	ADD3	10	111885621	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3426634	111885621	23649126	1173	138164											
NRAP	4892	broad.mit.edu	37	chr10	115357723	115357723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtggggacaggttgatGgtacctcgctgatgagttct	16	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115357723	T	T	115357723	1	4	168	0	1	0	0	0	0	0	0	0	10733	1363	47	2		2	NRAP	10	115357723	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3472102	115357723	20177024	1174	138165											
TDRD1	56165	broad.mit.edu	37	chr10	115982366	115982366	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcaggaaaagctgtgcAtgttgacagctgaattatta	9	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115982366	C	C	115982366	3	2	168	1	0	0	0	0	1	0	0	0	15852	217	8	5	2989	5	TDRD1	10	115982366	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	624643	115982366	19552381	1175	138166											
ATRNL1	26033	broad.mit.edu	37	chr10	117024738	117024738	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacagatttggacactctGcagtagtcattaacgggtaa	9	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117024738	T	T	117024738	3	4	168	1	0	0	0	0	1	0	0	0	1211	1319	46	3	1798	3	ATRNL1	10	117024738	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1042372	117024738	18510009	1176	138167											
ATRNL1	26033	broad.mit.edu	37	chr10	117045739	117045739	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactagctcatctttgtggAgaaggatggagtcatattgg	12	5	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117045739	G	G	117045739	2	3	168	1	0	0	0	0	0	0	0	1	1211	291	11	5		5	ATRNL1	10	117045739	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	21001	117045739	18489008	1177	138168											
EIF3A	8661	broad.mit.edu	37	chr10	120832466	120832466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctaagaaggtccaaacaCtgcctgtaagactcccacag	7	12	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120832466	A	A	120832466	3	1	168	1	0	0	0	0	1	0	0	0	5052	564	20	3	3747	3	EIF3A	10	120832466	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3786727	120832466	14702281	1178	138169											
SFXN4	119559	broad.mit.edu	37	chr10	120919215	120919215	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcccaagcccctagtctccTaacggcaaatgtctgcttgc	7	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120919215	A	A	120919215	1	1	168	0	1	0	0	0	0	0	0	0	14310	1537	53	5		5	SFXN4	10	120919215	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	86749	120919215	14615532	1179	138170											
BTBD16	118663	broad.mit.edu	37	chr10	124097609	124097609	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagcatcttgacagtttccAgaagaatctatgggattttc	8	9	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124097609	T	T	124097609	1	4	168	0	1	0	0	0	0	0	0	0	1550	203	7	5		5	BTBD16	10	124097609	3'UTR	SNP	A	TCGA-50-6590-01A-12D-1855-08	3178394	124097609	11437138	1180	138171											
LHPP	64077	broad.mit.edu	37	chr10	126205795	126205795	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcgacgtcggcggtgcccAgcggtgtggaatgagagcgc	20	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126205795	T	T	126205795	3	4	168	1	0	0	0	0	1	0	0	0	8841	188	7	5	693	5	LHPP	10	126205795	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2108186	126205795	9328952	1181	138172											
FANK1	92565	broad.mit.edu	37	chr10	127693550	127693550	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacctgggaggctgtacaGctctgcactgggctgcagat	15	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127693550	A	A	127693550	3	1	168	1	0	0	0	0	1	0	0	0	5729	971	34	4	663	4	FANK1	10	127693550	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1487755	127693550	7841197	1182	138173											
ADAM12	8038	broad.mit.edu	37	chr10	127843972	127843972	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggtagcaagattgtgacctCctttttttttttttaacaga	8	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127843972	G	G	127843972	1	3	168	0	1	0	0	0	0	0	0	0	236	870	30	4		4	ADAM12	10	127843972	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	150422	127843972	7690775	1183	138174											
C10orf90	118611	broad.mit.edu	37	chr10	128147624	128147624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttaccactcagaggatgggGaatcgtgaactgcttcttgc	11	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128147624	T	T	128147624	3	4	168	1	0	0	0	0	1	0	0	0	1634	1174	41	3	233	3	C10orf90	10	128147624	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	303652	128147624	7387123	1184	138175											
DOCK1	1793	broad.mit.edu	37	chr10	129216871	129216871	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacagactgaaaattcccgaGagtccccaaagcccagaaac	8	13	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129216871	T	T	129216871	1	4	168	0	1	0	0	0	0	0	0	0	4724	957	33	3		3	DOCK1	10	129216871	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1069247	129216871	6317876	1185	138176											
LRRC27	80313	broad.mit.edu	37	chr10	134165200	134165200	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaaagactggaagagagccGagcggcggcgctccgagagc	16	10	0	3	rs138072740		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134165200	A	A	134165200	3	1	168	1	0	0	0	0	1	0	0	0	9068	1059	37	4	1137	4	LRRC27	10	134165200	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4948329	134165200	1369547	1186	138177											
KNDC1	85442	broad.mit.edu	37	chr10	135027556	135027556	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggacaagtatctgttacAgcttctaagaaacgcagatg	9	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135027556	T	T	135027556	3	4	168	1	0	0	0	0	1	0	0	0	8497	188	7	5	4709	5	KNDC1	10	135027556	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	862356	135027556	507191	1187	138178											
MTG1	92170	broad.mit.edu	37	chr10	135233637	135233637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggacctcgacgtcctgCggggccaccccccggctgag	14	17	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135233637	T	T	135233637	3	4	168	1	0	0	0	0	1	0	0	0	10020	759	27	4	1015	4	MTG1	10	135233637	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	206081	135233637	301110	1188	138179											
CD151	977	broad.mit.edu	37	chr11	837420	837420	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggacctctgcaggagcctCtggccccaggtctcaacccc	10	18	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	837420	G	G	837420	1	3	168	0	1	0	0	0	0	0	0	0	2995	928	32	4		4	CD151	11	837420	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08		837420	134169096	1189	138180											
MUC6	4588	broad.mit.edu	37	chr11	1029498	1029498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggcgcctcactcaccagGtttggcaggcagctattgtg	12	13	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1029498	T	T	1029498	3	4	168	1	0	0	0	0	1	0	0	0	10074	1261	44	3	6286	3	MUC6	11	1029498	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	192078	1029498	133977018	1190	138181											
TNNI2	7136	broad.mit.edu	37	chr11	1860815	1860815	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgggagggggctgtcatcagGagccctgaacccctcaccac	13	15	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1860815	T	T	1860815	1	4	168	0	1	0	0	0	0	0	0	0	16450	1189	41	3		3	TNNI2	11	1860815	5'Flank	SNP	G	TCGA-50-6590-01A-12D-1855-08	831317	1860815	133145701	1191	138182											
LSP1	4046	broad.mit.edu	37	chr11	1905563	1905563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagagaagaggtctgtctgTctgtctgtctgctttctggg	13	7	6	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1905563	A	A	1905563	1	1	168	0	1	0	0	0	0	0	0	0	9150	1682	58	5		5	LSP1	11	1905563	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	44748	1905563	133100953	1192	138183											
TNNT3	7140	broad.mit.edu	37	chr11	1957395	1957395	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctagcccacagccgggcctCgatgccccagccgcccatcc	10	21	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1957395	T	T	1957395	1	4	168	0	1	0	0	0	0	0	0	0	16455	899	31	4		4	TNNT3	11	1957395	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	51832	1957395	133049121	1193	138184											
TRIM21	6737	broad.mit.edu	37	chr11	4406815	4406815	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaaccaaattgtccagaaGccactcttggaactaagcaa	6	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4406815	C	C	4406815	2	2	168	1	0	0	0	0	0	0	0	1	16619	958	34	4		4	TRIM21	11	4406815	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2449420	4406815	130599701	1194	138185											
OR51D1	390038	broad.mit.edu	37	chr11	4661732	4661732	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatcctcatcctgtgggctGttttggagctgtcctctcgg	11	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4661732	C	C	4661732	3	2	168	1	0	0	0	0	1	0	0	0	11187	1377	48	4	714	4	OR51D1	11	4661732	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	254917	4661732	130344784	1195	138186											
OR51B6	390058	broad.mit.edu	37	chr11	5373151	5373151	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatcctgaccaacacccaGgtaatgaagattggtgtgcg	10	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5373151	A	A	5373151	2	1	168	1	0	0	0	0	0	0	0	1	11186	991	35	4		4	OR51B6	11	5373151	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	711419	5373151	129633365	1196	138187											
OR51Q1	390061	broad.mit.edu	37	chr11	5444012	5444012	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcctggtctgtgctgacatCaggctcaacagctggtatgg	13	11	3	1	rs146457615		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5444012	A	A	5444012	2	1	168	1	0	0	0	0	0	0	0	1	11198	816	29	3		3	OR51Q1	11	5444012	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	70861	5444012	129562504	1197	138188											
OR56A3	390083	broad.mit.edu	37	chr11	5969240	5969240	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatccttatcttcctctccTacaccttcattctgcgagct	3	16	5	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5969240	C	C	5969240	3	2	168	1	0	0	0	0	1	0	0	0	11228	1522	53	5	666	5	OR56A3	11	5969240	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	525228	5969240	129037276	1198	138189											
OR56A4	120793	broad.mit.edu	37	chr11	6023420	6023420	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctggaggaattctcttcCtggccaggttagtgatgacc	11	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6023420	T	T	6023420	3	4	168	1	0	0	0	0	1	0	0	0	11229	681	24	4	140	4	OR56A4	11	6023420	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	54180	6023420	128983096	1199	138190											
C11orf42	160298	broad.mit.edu	37	chr11	6231720	6231720	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcatgccgcctctggcccCcacatcagcacctgctgata	7	18	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6231720	G	G	6231720	3	3	168	1	0	0	0	0	1	0	0	0	1653	623	22	4	719	4	C11orf42	11	6231720	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	208300	6231720	128774796	1200	138191											
TRIM3	10612	broad.mit.edu	37	chr11	6487011	6487011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccagaacttcttctcccCacccaatccccgccactcaa	3	20	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6487011	A	A	6487011	1	1	168	0	1	0	0	0	0	0	0	0	16628	609	21	2		2	TRIM3	11	6487011	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	255291	6487011	128519505	1201	138192											
ILK	3611	broad.mit.edu	37	chr11	6631346	6631346	+	Intron	DEL	G	-	-													ggcagagacaggacaggcaaGggggccagaacagacaagcc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6631346	-	-	6631346	6	5	168	0	1	1	0	1	0	0	0	0	7783	1015	35	0		0	ILK	11	6631346	Intron	DEL	G	TCGA-50-6590-01A-12D-1855-08	144335	6631346	128375170	1202	138193											
OR2AG2	338755	broad.mit.edu	37	chr11	6789238	6789238	+	Nonstop_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcaagccatgatccttccCtagagcgtggaatgtgccag	12	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6789238	G	G	6789238	4	3	168	1	0	0	0	0	0	0	0	0	11079	695	24	4	3	4	OR2AG2	11	6789238	Nonstop_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	157892	6789238	128217278	1203	138194											
OR2AG1	144125	broad.mit.edu	37	chr11	6807060	6807060	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtatgtcttgcccagttcCttccacagcaccagacaaga	7	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6807060	A	A	6807060	2	1	168	1	0	0	0	0	0	0	0	1	11078	668	24	2		2	OR2AG1	11	6807060	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	17822	6807060	128199456	1204	138195											
OR10A5	144124	broad.mit.edu	37	chr11	6867090	6867090	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccatgctacacagcccCatgtacttcttcctcagaaa	5	16	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6867090	A	A	6867090	2	1	168	1	0	0	0	0	0	0	0	1	10987	581	21	2		2	OR10A5	11	6867090	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	60030	6867090	128139426	1205	138196											
SBF2	81846	broad.mit.edu	37	chr11	9853807	9853807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagatttgaaaagaccaaCgactcccttcccatggaatc	7	12	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9853807	A	A	9853807	3	1	168	1	0	0	0	0	1	0	0	0	13971	536	19	3	1989	3	SBF2	11	9853807	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2986717	9853807	125152709	1206	138197											
SBF2	81846	broad.mit.edu	37	chr11	9990064	9990064	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttggccgtggaactttcTggaatgccatatgaggattt	12	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9990064	C	C	9990064	3	2	168	1	0	0	0	0	1	0	0	0	13971	1580	55	5	4233	5	SBF2	11	9990064	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	136257	9990064	125016452	1207	138198											
COPB1	1315	broad.mit.edu	37	chr11	14515881	14515881	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcctgaagaggtagcaCaaaacgaatgatggtcatca	11	7	2	4	rs147506345		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14515881	G	G	14515881	3	3	168	1	0	0	0	0	1	0	0	0	3760	478	17	4	2745	4	COPB1	11	14515881	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4525817	14515881	120490635	1208	138199											
PLEKHA7	144100	broad.mit.edu	37	chr11	16824580	16824580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaccctgtcttgttcaCagaagatgctcagtttgacc	11	10	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16824580	A	A	16824580	3	1	168	1	0	0	0	0	1	0	0	0	12156	478	17	3	1305	3	PLEKHA7	11	16824580	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2308699	16824580	118181936	1209	138200											
ABCC8	6833	broad.mit.edu	37	chr11	17416026	17416026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgggatggcttggggggCtgttggaaaatgtgtgcatg	19	3	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17416026	A	A	17416026	1	1	168	0	1	0	0	0	0	0	0	0	58	812	28	3		3	ABCC8	11	17416026	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	591446	17416026	117590490	1210	138201											
ABCC8	6833	broad.mit.edu	37	chr11	17434921	17434921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctggctttgaaaaaaccCctcagaggctgctactaacc	8	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17434921	A	A	17434921	1	1	168	0	1	0	0	0	0	0	0	0	58	638	22	2		2	ABCC8	11	17434921	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	18895	17434921	117571595	1211	138202											
ABCC8	6833	broad.mit.edu	37	chr11	17434996	17434996	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtcgatgtctggctgcAgagagcaggcttcaatgacc	14	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17434996	T	T	17434996	3	4	168	1	0	0	0	0	1	0	0	0	58	188	7	5	2405	5	ABCC8	11	17434996	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	75	17434996	117571520	1212	138203											
UEVLD	55293	broad.mit.edu	37	chr11	18610241	18610241	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taggtcccaggactccagccCccggaccttcttccggactt	9	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18610241	G	G	18610241	1	3	168	0	1	0	0	0	0	0	0	0	17059	638	22	4		4	UEVLD	11	18610241	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	1175245	18610241	116396275	1213	138204											
E2F8	79733	broad.mit.edu	37	chr11	19251862	19251862	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgggaagggtgcagaattCtgagaactctcagctggtaa	13	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19251862	T	T	19251862	2	4	168	1	0	0	0	0	0	0	0	1	4913	912	32	4		4	E2F8	11	19251862	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	641621	19251862	115754654	1214	138205											
NAV2	89797	broad.mit.edu	37	chr11	19905765	19905765	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccccattgtcagaagactCttaggatttgtgtgtctaat	8	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19905765	G	G	19905765	1	3	168	0	1	0	0	0	0	0	0	0	10278	928	32	4		4	NAV2	11	19905765	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	653903	19905765	115100751	1215	138206											
NAV2	89797	broad.mit.edu	37	chr11	20119101	20119101	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccacatctttgatggggtCtttattttttattttttcca	6	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20119101	G	G	20119101	1	3	168	0	1	0	0	0	0	0	0	0	10278	928	32	4		4	NAV2	11	20119101	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	213336	20119101	114887415	1216	138207											
PRMT3	10196	broad.mit.edu	37	chr11	20486092	20486092	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggacatccatgtgcacGgtaagctatttcattctgct	8	10	2	0	rs149199835		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20486092	T	T	20486092	2	4	168	1	0	0	0	0	0	0	0	1	12644	1130	39	1		1	PRMT3	11	20486092	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	366991	20486092	114520424	1217	138208											
NELL1	4745	broad.mit.edu	37	chr11	20959507	20959507	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatattggcctggatagGgccccgaggggtggaactct	17	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20959507	T	T	20959507	1	4	168	0	1	0	0	0	0	0	0	0	10428	1247	43	2		2	NELL1	11	20959507	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	473415	20959507	114047009	1218	138209											
ANO5	203859	broad.mit.edu	37	chr11	22242707	22242707	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggattaggcaaattgattTtgtgctttcctacgttgatg	11	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22242707	C	C	22242707	3	2	168	1	0	0	0	0	1	0	0	0	700	1841	64	5	263	5	ANO5	11	22242707	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1283200	22242707	112763809	1219	138210											
ANO5	203859	broad.mit.edu	37	chr11	22283567	22283567	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgccagaatggggagcattCtataggctcccagaatgatg	12	9	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22283567	G	G	22283567	1	3	168	0	1	0	0	0	0	0	0	0	700	928	32	4		4	ANO5	11	22283567	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	40860	22283567	112722949	1220	138211											
SLC17A6	57084	broad.mit.edu	37	chr11	22387293	22387293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatctcgcccccattgacCaaccaaactatcttacaagt	3	17	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22387293	A	A	22387293	1	1	168	0	1	0	0	0	0	0	0	0	14534	609	21	2		2	SLC17A6	11	22387293	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	103726	22387293	112619223	1221	138212											
ANO3	63982	broad.mit.edu	37	chr11	26555920	26555920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttactatgcttcatatGcattagctttaatggaactt	6	6	1	1	rs143704682	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26555920	T	T	26555920	1	4	168	0	1	0	0	0	0	0	0	0	698	1334	46	3		3	ANO3	11	26555920	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4168627	26555920	108450596	1222	138213											
CCDC34	91057	broad.mit.edu	37	chr11	27371933	27371933	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttcagcaattatcttTcttttttcacgttcttccat	2	10	6	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27371933	C	C	27371933	2	2	168	1	0	0	0	0	0	0	0	1	2834	1780	62	5		5	CCDC34	11	27371933	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	816013	27371933	107634583	1223	138214											
KCNA4	3739	broad.mit.edu	37	chr11	30033352	30033352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaagaggagccaaatctGctttttaaattcattctcgg	7	8	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30033352	T	T	30033352	3	4	168	1	0	0	0	0	1	0	0	0	8075	1328	46	3	1091	3	KCNA4	11	30033352	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2661419	30033352	104973164	1224	138215											
C11orf41	25758	broad.mit.edu	37	chr11	33564580	33564580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatcctttctggggcggttCccgcatcaccatcaactggg	10	15	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33564580	A	A	33564580	3	1	168	1	0	0	0	0	1	0	0	0	1652	855	30	3	582	3	C11orf41	11	33564580	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3531228	33564580	101441936	1225	138216											
LDLRAD3	143458	broad.mit.edu	37	chr11	36248607	36248607	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaactggtaaccttctctCttttctctcctctcttgggt	5	14	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36248607	T	T	36248607	1	4	168	0	1	0	0	0	0	0	0	0	8779	928	32	4		4	LDLRAD3	11	36248607	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2684027	36248607	98757909	1226	138217											
LRRC4C	57689	broad.mit.edu	37	chr11	40137814	40137814	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggacctatcattatctgcTgtggatgtaaggtcatcttg	10	7	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40137814	A	A	40137814	3	1	168	1	0	0	0	0	1	0	0	0	9095	1580	55	5	1897	5	LRRC4C	11	40137814	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	3889207	40137814	94868702	1227	138218											
ALKBH3	221120	broad.mit.edu	37	chr11	43920661	43920661	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaaggggacattgtcttTaacatctatcactccaagag	7	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43920661	C	C	43920661	1	2	168	0	1	0	0	0	0	0	0	0	528	1769	61	5		5	ALKBH3	11	43920661	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	3782847	43920661	91085855	1228	138219											
ACCSL	390110	broad.mit.edu	37	chr11	44069547	44069547	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtctctttctccataggTgccaggcagccttcagaggc	11	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44069547	G	G	44069547	1	3	168	0	1	0	0	0	0	0	0	0	134	1711	59	5		5	ACCSL	11	44069547	5'UTR	SNP	T	TCGA-50-6590-01A-12D-1855-08	148886	44069547	90936969	1229	138220											
ACCS	84680	broad.mit.edu	37	chr11	44105089	44105089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagagcctggttggtttcGctttgtcttctcagaccagg	11	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44105089	T	T	44105089	3	4	168	1	0	0	0	0	1	0	0	0	133	1087	38	3	1420	3	ACCS	11	44105089	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	35542	44105089	90901427	1230	138221											
TSPAN18	90139	broad.mit.edu	37	chr11	44941315	44941315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtccttctctgtccccGcccctgtgtcctcctcctgc	7	19	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44941315	T	T	44941315	1	4	168	0	1	0	0	0	0	0	0	0	16767	1102	38	3		3	TSPAN18	11	44941315	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	836226	44941315	90065201	1231	138222											
PHF21A	51317	broad.mit.edu	37	chr11	46098392	46098392	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgattggaaagaaaaaatatCtgtgagaaagatatttcatt	8	2	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46098392	G	G	46098392	1	3	168	0	1	0	0	0	0	0	0	0	11928	928	32	4		4	PHF21A	11	46098392	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1157077	46098392	88908124	1232	138223											
CKAP5	9793	broad.mit.edu	37	chr11	46812053	46812053	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccactatttctttagtctcCagtcctttcttgttcttggt	5	11	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46812053	T	T	46812053	2	4	168	1	0	0	0	0	0	0	0	1	3476	581	21	4		4	CKAP5	11	46812053	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	713661	46812053	88194463	1233	138224											
AGBL2	79841	broad.mit.edu	37	chr11	47681984	47681984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttggggttggctttacaaGgagctggtgagaaatatttg	16	3	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47681984	A	A	47681984	1	1	168	0	1	0	0	0	0	0	0	0	376	1015	35	4		4	AGBL2	11	47681984	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	869931	47681984	87324532	1234	138225											
OR4B1	119765	broad.mit.edu	37	chr11	48238559	48238559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttagctgcctgtccttGgtggagatcagttattcctc	9	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48238559	T	T	48238559	3	4	168	1	0	0	0	0	1	0	0	0	11138	1339	47	2	200	2	OR4B1	11	48238559	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	556575	48238559	86767957	1235	138226											
FOLH1	2346	broad.mit.edu	37	chr11	49204671	49204671	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaataagaaaattacccaaAtagccatccatggtttctta	4	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49204671	G	G	49204671	1	3	168	0	1	0	0	0	0	0	0	0	6037	116	4	5		5	FOLH1	11	49204671	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	966112	49204671	85801845	1236	138227											
OR4C46	119749	broad.mit.edu	37	chr11	51515953	51515953	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcatcttgtgctccctaagGactcatagcttggaggcaag	11	10	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515953	A	A	51515953	2	1	168	1	0	0	0	0	0	0	0	1	11145	1165	41	4		4	OR4C46	11	51515953	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2311282	51515953	83490563	1237	138228											
OR4A15	81328	broad.mit.edu	37	chr11	55136241	55136241	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccaattctacttttccCattgataaatccatgactgt	5	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55136241	A	A	55136241	2	1	168	1	0	0	0	0	0	0	0	1	11134	581	21	2		2	OR4A15	11	55136241	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3620288	55136241	79870275	1238	138229											
OR5D13	390142	broad.mit.edu	37	chr11	55541105	55541106	+	Missense_Mutation	DNP	CC	AA	AA													catacaatcatgtgctttttCcttagtcacttgtccttgac							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55541106	AA	AA	55541105	3	1	168	1	0	0	0	0	1	0	0	0	11248	854	30	3	194	3	OR5D13	11	55541105	Missense_Mutation	DNP	CC	TCGA-50-6590-01A-12D-1855-08	404864	55541105	79465411	1239	138230											
OR5D14	219436	broad.mit.edu	37	chr11	55563504	55563504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctggggcatgtttggccCcttggtactcctttgttatg	11	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55563504	A	A	55563504	3	1	168	1	0	0	0	0	1	0	0	0	11249	623	22	2	475	2	OR5D14	11	55563504	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	22399	55563504	79443012	1240	138231											
OR5L1	219437	broad.mit.edu	37	chr11	55579021	55579021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgagttgagagtctgcCtcttcctgctgttccttctc	8	14	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579021	A	A	55579021	3	1	168	1	0	0	0	0	1	0	0	0	11264	681	24	2	81	2	OR5L1	11	55579021	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	15517	55579021	79427495	1241	138232											
OR10AG1	282770	broad.mit.edu	37	chr11	55735447	55735447	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcacaaaagaaatgattaaTtgtgttagttccgcaaaagg	9	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55735447	A	A	55735447	3	1	168	1	0	0	0	0	1	0	0	0	10991	1493	52	5	415	5	OR10AG1	11	55735447	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	156426	55735447	79271069	1242	138233											
OR5F1	338674	broad.mit.edu	37	chr11	55761571	55761571	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgggggactgtcacagaaGaagtgatggatgacattgga	16	4	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55761571	T	T	55761571	3	4	168	1	0	0	0	0	1	0	0	0	11252	933	33	3	416	3	OR5F1	11	55761571	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	26124	55761571	79244945	1243	138234											
OR5T3	390154	broad.mit.edu	37	chr11	56019822	56019823	+	Missense_Mutation	DNP	TG	CT	CT													atattgacaggcttcacagaTgattttgagctgcaagtctt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	56019823	CT	CT	56019822	3	2	168	1	0	0	0	0	1	0	0	0	11277	1461	51	5	149	5	OR5T3	11	56019822	Missense_Mutation	DNP	TG	TCGA-50-6590-01A-12D-1855-08	258251	56019822	78986694	1244	138235											
OR8K3	219473	broad.mit.edu	37	chr11	56086245	56086245	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttacctctattgcacattcAtttctcttctagtcaccata	2	13	5	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56086245	T	T	56086245	3	4	168	1	0	0	0	0	1	0	0	0	11338	217	8	5	465	5	OR8K3	11	56086245	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	66423	56086245	78920271	1245	138236											
OR8J1	219477	broad.mit.edu	37	chr11	56127732	56127732	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaactctgacatggctcctGaaaatttcaccagagtcact	6	12	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56127732	A	A	56127732	3	1	168	1	0	0	0	0	1	0	0	0	11335	1291	45	4	12	4	OR8J1	11	56127732	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	41487	56127732	78878784	1246	138237											
OR9Q1	219956	broad.mit.edu	37	chr11	57947251	57947251	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctttggttccatcgactGctacctcttggccctcatgg	8	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57947251	A	A	57947251	3	1	168	1	0	0	0	0	1	0	0	0	11349	1319	46	4	337	4	OR9Q1	11	57947251	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1819519	57947251	77059265	1247	138238											
OR10Q1	219960	broad.mit.edu	37	chr11	57995652	57995652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccctcggcagaacggatGctcaggatggcacaggtgat	15	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995652	T	T	57995652	3	4	168	1	0	0	0	0	1	0	0	0	11010	1310	46	3	267	3	OR10Q1	11	57995652	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	48401	57995652	77010864	1248	138239											
OR5B12	390191	broad.mit.edu	37	chr11	58207086	58207086	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgagagagtcaagagaggaGgagcatcacagaaaaagtgt	14	4	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58207086	C	C	58207086	3	2	168	1	0	0	0	0	1	0	0	0	11242	1000	35	4	409	4	OR5B12	11	58207086	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	211434	58207086	76799430	1249	138240											
GLYATL2	219970	broad.mit.edu	37	chr11	58605978	58605978	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgggccagtgcttccaGgatggctcattgggctactc	14	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58605978	A	A	58605978	1	1	168	0	1	0	0	0	0	0	0	0	6545	1015	35	4		4	GLYATL2	11	58605978	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	398892	58605978	76400538	1250	138241											
OR5A1	219982	broad.mit.edu	37	chr11	59211574	59211574	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaaggtgttggaaaggaaGaaagtgttttcttaggtcat	14	2	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59211574	A	A	59211574	2	1	168	1	0	0	0	0	0	0	0	1	11233	933	33	4		4	OR5A1	11	59211574	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	605596	59211574	75794942	1251	138242											
OR4D11	219986	broad.mit.edu	37	chr11	59271968	59271968	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgaagagaagactcgtgcCttctgaaagggaatagaaaa	11	6	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59271968	T	T	59271968	3	4	168	1	0	0	0	0	1	0	0	0	11149	681	24	4	922	4	OR4D11	11	59271968	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	60394	59271968	75734548	1252	138243											
PLAC1L	219990	broad.mit.edu	37	chr11	59811015	59811015	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcagaaatctgtatatAtttgcggatgaattacatct	8	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59811015	T	T	59811015	2	4	168	1	0	0	0	0	0	0	0	1	12108	439	16	5		5	PLAC1L	11	59811015	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	539047	59811015	75195501	1253	138244											
MS4A12	54860	broad.mit.edu	37	chr11	60269415	60269415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaattcccaagcacaacCagttaacccatttcacaaat	4	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60269415	A	A	60269415	1	1	168	0	1	0	0	0	0	0	0	0	9950	609	21	2		2	MS4A12	11	60269415	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	458400	60269415	74737101	1254	138245											
TMEM132A	54972	broad.mit.edu	37	chr11	60695346	60695346	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggtgagtagacaggcCccacctaggctggtcctgct	12	13	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60695346	A	A	60695346	1	1	168	0	1	0	0	0	0	0	0	0	16168	638	22	2		2	TMEM132A	11	60695346	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	425931	60695346	74311170	1255	138246											
VWCE	220001	broad.mit.edu	37	chr11	61050436	61050436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagaaccttggaaatataTggtcccctcttcctccctca	5	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61050436	A	A	61050436	1	1	168	0	1	0	0	0	0	0	0	0	17372	1479	51	5		5	VWCE	11	61050436	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	355090	61050436	73956080	1256	138247											
CPSF7	79869	broad.mit.edu	37	chr11	61187394	61187394	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagatggtctccacgtacCccctcttgggactcggacac	9	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61187394	A	A	61187394	4	1	168	1	0	0	0	0	0	1	0	0	3862	637	22	2	885	2	CPSF7	11	61187394	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	136958	61187394	73819122	1257	138248											
UBXN1	51035	broad.mit.edu	37	chr11	62445448	62445448	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctctcctcagcagcccGgcgcatctcatcttcctgta	7	19	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62445448	A	A	62445448	3	1	168	1	0	0	0	0	1	0	0	0	17037	1115	39	4	521	4	UBXN1	11	62445448	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1258054	62445448	72561068	1258	138249											
SLC22A10	387775	broad.mit.edu	37	chr11	63057949	63057949	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcacctgaatgggacTatccacagcacaagtgaggc	9	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63057949	A	A	63057949	2	1	168	1	0	0	0	0	0	0	0	1	14554	1509	53	5		5	SLC22A10	11	63057949	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	612501	63057949	71948567	1259	138250											
MARK2	2011	broad.mit.edu	37	chr11	63656439	63656439	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccctttctccagtcgggtAtgttgtccccctttttactc	6	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63656439	T	T	63656439	1	4	168	0	1	0	0	0	0	0	0	0	9405	464	16	5		5	MARK2	11	63656439	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	598490	63656439	71350077	1260	138251											
MARK2	2011	broad.mit.edu	37	chr11	63666261	63666261	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatttgattacctagtggctCatggcaggatgaaagaaaaa	10	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63666261	A	A	63666261	3	1	168	1	0	0	0	0	1	0	0	0	9405	826	29	3	452	3	MARK2	11	63666261	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	9822	63666261	71340255	1261	138252											
SLC22A12	116085	broad.mit.edu	37	chr11	64360946	64360946	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgggtacggcagctgccttCgcccctgccttccccgtgta	11	16	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64360946	T	T	64360946	2	4	168	1	0	0	0	0	0	0	0	1	14556	883	31	4		4	SLC22A12	11	64360946	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	694685	64360946	70645570	1262	138253											
NRXN2	9379	broad.mit.edu	37	chr11	64427723	64427723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcttgctggtgccaccaCcagcttctccagacagaggc	9	16	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64427723	A	A	64427723	1	1	168	0	1	0	0	0	0	0	0	0	10761	522	18	3		3	NRXN2	11	64427723	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	66777	64427723	70578793	1263	138254											
NAALADL1	10004	broad.mit.edu	37	chr11	64820931	64820931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catccagagcagagcaggggCctggggtgcaggcagcaaga	17	10	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64820931	T	T	64820931	1	4	168	0	1	0	0	0	0	0	0	0	10223	754	26	4		4	NAALADL1	11	64820931	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	393208	64820931	70185585	1264	138255											
CAPN1	823	broad.mit.edu	37	chr11	64977410	64977410	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggttgtccccactcacctCagtcatgcaggtgcgggccg	12	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64977410	T	T	64977410	1	4	168	0	1	0	0	0	0	0	0	0	2648	841	29	4		4	CAPN1	11	64977410	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	156479	64977410	70029106	1265	138256											
TSGA10IP	254187	broad.mit.edu	37	chr11	65721244	65721244	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcgggaggcctggttgggaGagggcagggaggccgtgtca	21	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65721244	T	T	65721244	1	4	168	0	1	0	0	0	0	0	0	0	16743	957	33	3		3	TSGA10IP	11	65721244	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	743834	65721244	69285272	1266	138257											
GAL3ST3	89792	broad.mit.edu	37	chr11	65810536	65810536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgcagcagcactagcgaCtcgtcgaagtactcggcgat	12	14	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65810536	A	A	65810536	3	1	168	1	0	0	0	0	1	0	0	0	6261	564	20	3	561	3	GAL3ST3	11	65810536	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	89292	65810536	69195980	1267	138258											
CCS	9973	broad.mit.edu	37	chr11	66367067	66367067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgggctgcatggactcCacgtccatcagtacggggac	13	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66367067	A	A	66367067	3	1	168	1	0	0	0	0	1	0	0	0	2982	594	21	2	402	2	CCS	11	66367067	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	556531	66367067	68639449	1268	138259											
SPTBN2	6712	broad.mit.edu	37	chr11	66476574	66476574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttccaaatgggtgtcctgTgttgcttttcttcttacaaa	7	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66476574	A	A	66476574	1	1	168	0	1	0	0	0	0	0	0	0	15238	1711	59	5		5	SPTBN2	11	66476574	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	109507	66476574	68529942	1269	138260											
ADRBK1	156	broad.mit.edu	37	chr11	67046685	67046685	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagggtacctgctcttcCgagacttctgcctgaaccac	8	15	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67046685	A	A	67046685	2	1	168	1	0	0	0	0	0	0	0	1	343	644	23	1		1	ADRBK1	11	67046685	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	570111	67046685	67959831	1270	138261											
SSH3	54961	broad.mit.edu	37	chr11	67075137	67075137	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagactgaactccgaacaGagctgcctcaatgagtggac	12	10	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67075137	A	A	67075137	2	1	168	1	0	0	0	0	0	0	0	1	15304	933	33	4		4	SSH3	11	67075137	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	28452	67075137	67931379	1271	138262											
C11orf24	53838	broad.mit.edu	37	chr11	68029494	68029494	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcatggggcttggctgtgtCgtgggggacatggcctccat	18	9	0	0	rs144699148	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68029494	A	A	68029494	2	1	168	1	0	0	0	0	0	0	0	1	1647	871	31	3		3	C11orf24	11	68029494	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	954357	68029494	66977022	1272	138263											
CPT1A	1374	broad.mit.edu	37	chr11	68522274	68522274	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccatatgctgagactttCcactttgtctcaagtatctg	6	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68522274	A	A	68522274	1	1	168	0	1	0	0	0	0	0	0	0	3863	870	30	3		3	CPT1A	11	68522274	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	492780	68522274	66484242	1273	138264											
CTTN	2017	broad.mit.edu	37	chr11	70261828	70261828	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgcctcccagaaaggtaaGacgcgaaaggtgcagaaaga	12	9	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70261828	C	C	70261828	1	2	168	0	1	0	0	0	0	0	0	0	4078	957	33	4		4	CTTN	11	70261828	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1739554	70261828	64744688	1274	138265											
NUMA1	4926	broad.mit.edu	37	chr11	71725417	71725418	+	Frame_Shift_Del	DEL	CT	-	-													gcctcttgcagggtagcgaaCtccacacgctgctcgttgag							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71725418	-	-	71725417	7	5	168	1	0	1	0	1	0	0	0	0	10845	564	20	0	3267	0	NUMA1	11	71725417	Frame_Shift_Del	DEL	CT	TCGA-50-6590-01A-12D-1855-08	1463589	71725417	63281099	1275	138266											
GDPD5	81544	broad.mit.edu	37	chr11	75160019	75160019	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggaccctgaggtggcactCaccatgggggccccgcggtg	16	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75160019	T	T	75160019	1	4	168	0	1	0	0	0	0	0	0	0	6391	841	29	4		4	GDPD5	11	75160019	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3434602	75160019	59846497	1276	138267											
SERPINH1	871	broad.mit.edu	37	chr11	75277965	75277965	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctgcccgaggtcaccaagGacgtggagcgcacggacggc	16	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75277965	C	C	75277965	3	2	168	1	0	0	0	0	1	0	0	0	14230	1174	41	4	573	4	SERPINH1	11	75277965	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	117946	75277965	59728551	1277	138268											
UVRAG	7405	broad.mit.edu	37	chr11	75852056	75852056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaacaagaaaaaaggagagGatctagttggcagcttaaac	10	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75852056	T	T	75852056	3	4	168	1	0	0	0	0	1	0	0	0	17235	1174	41	3	1757	3	UVRAG	11	75852056	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	574091	75852056	59154460	1278	138269											
C11orf30	56946	broad.mit.edu	37	chr11	76260927	76260927	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttttttttttttttcttGatattgttggggaagttatt	7	2	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76260927	T	T	76260927	1	4	168	0	1	0	0	0	0	0	0	0	1648	1305	45	3		3	C11orf30	11	76260927	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	408871	76260927	58745589	1279	138270											
EED	8726	broad.mit.edu	37	chr11	85979592	85979592	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgatggttaggcgatttgAtactttctaaggtatggtaa	12	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85979592	C	C	85979592	3	2	168	1	0	0	0	0	1	0	0	0	4962	333	12	5	989	5	EED	11	85979592	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	9718665	85979592	49026924	1280	138271											
GRM5	2915	broad.mit.edu	37	chr11	88583026	88583026	+	Intron	DEL	C	-	-													aaagctacccttcagtgctgCcaaattcctggtattaactc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88583026	-	-	88583026	6	5	168	0	1	1	0	1	0	0	0	0	6866	754	26	0		0	GRM5	11	88583026	Intron	DEL	C	TCGA-50-6590-01A-12D-1855-08	2603434	88583026	46423490	1281	138272											
TYR	7299	broad.mit.edu	37	chr11	89028421	89028421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcctcactgccctgctgGcagggcttgtgagcttgctg	13	14	1	1	rs146020203		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89028421	T	T	89028421	3	4	168	1	0	0	0	0	1	0	0	0	16939	1203	42	3	1495	3	TYR	11	89028421	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	445395	89028421	45978095	1282	138273											
NAALAD2	10003	broad.mit.edu	37	chr11	89885665	89885665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaaggtaagggatgagCctatcagtccaccaattttg	10	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89885665	A	A	89885665	1	1	168	0	1	0	0	0	0	0	0	0	10222	754	26	3		3	NAALAD2	11	89885665	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	857244	89885665	45120851	1283	138274											
FAT3	120114	broad.mit.edu	37	chr11	92538341	92538341	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaccctcgaggaaggttTgctctgggcctggtgcaaag	15	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92538341	G	G	92538341	3	3	168	1	0	0	0	0	1	0	0	0	5748	1809	63	5	8957	5	FAT3	11	92538341	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	2652676	92538341	42468175	1284	138275											
MED17	9440	broad.mit.edu	37	chr11	93542890	93542890	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcattcacagatgtcacAgcaccaggtacatgcagttc	7	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93542890	T	T	93542890	3	4	168	1	0	0	0	0	1	0	0	0	9528	188	7	5	1634	5	MED17	11	93542890	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1004549	93542890	41463626	1285	138276											
MRE11A	4361	broad.mit.edu	37	chr11	94203630	94203630	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcattgactttatcaaaaaGaattaccttctccaaacaga	3	10	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94203630	A	A	94203630	1	1	168	0	1	0	0	0	0	0	0	0	9853	957	33	4		4	MRE11A	11	94203630	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	660740	94203630	40802886	1286	138277											
FAM76B	143684	broad.mit.edu	37	chr11	95504852	95504852	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attcaagattaaaaatgtttGaaatattattaagtcatgct	5	3	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95504852	C	C	95504852	1	2	168	0	1	0	0	0	0	0	0	0	5678	1305	45	4		4	FAM76B	11	95504852	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1301222	95504852	39501664	1287	138278											
MMP27	64066	broad.mit.edu	37	chr11	102573508	102573508	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccatccttggtccagttttCatcctcatcaaaatgagtgt	6	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102573508	T	T	102573508	3	4	168	1	0	0	0	0	1	0	0	0	9758	835	29	4	974	4	MMP27	11	102573508	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	7068656	102573508	32433008	1288	138279											
MMP1	4312	broad.mit.edu	37	chr11	102666207	102666207	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatggcttggatgccatcaaTgtcatcctgagctagctgaa	10	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102666207	A	A	102666207	3	1	168	1	0	0	0	0	1	0	0	0	9741	1464	51	5	676	5	MMP1	11	102666207	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	92699	102666207	32340309	1289	138280											
CASP5	838	broad.mit.edu	37	chr11	104871020	104871020	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggacaatgatgaccttgGgtttgtcctttagactgagg	12	8	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104871020	C	C	104871020	3	2	168	1	0	0	0	0	1	0	0	0	2700	1232	43	4	400	4	CASP5	11	104871020	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2204813	104871020	30135496	1290	138281											
CASP5	838	broad.mit.edu	37	chr11	104872862	104872862	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attccttgcaggcaggtgatCaaactttgtattgcatatga	9	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104872862	G	G	104872862	3	3	168	1	0	0	0	0	1	0	0	0	2700	826	29	4	714	4	CASP5	11	104872862	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1842	104872862	30133654	1291	138282											
CASP1	834	broad.mit.edu	37	chr11	104937538	104937538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgtcaacctcagctccCgttattttagaaagactatc	6	10	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104937538	A	A	104937538	1	1	168	0	1	0	0	0	0	0	0	0	2694	667	23	1		1	CASP1	11	104937538	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	64676	104937538	30068978	1292	138283											
GRIA4	2893	broad.mit.edu	37	chr11	105836774	105836774	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggagaatgtggcagcgggGgaggtgactccaaggttagc	18	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105836774	A	A	105836774	1	1	168	0	1	0	0	0	0	0	0	0	6836	1233	43	4		4	GRIA4	11	105836774	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	899236	105836774	29169742	1293	138284											
GUCY1A2	2977	broad.mit.edu	37	chr11	106680949	106680949	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaagatccactgtcttctTtttctcttcttccagggcct	6	12	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106680949	A	A	106680949	4	1	168	1	0	0	0	0	0	1	0	0	6958	1850	64	5	752	5	GUCY1A2	11	106680949	Nonsense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	844175	106680949	28325567	1294	138285											
GUCY1A2	2977	broad.mit.edu	37	chr11	106810821	106810821	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaagtgccacctacagCtcgaaggactctctcattct	7	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106810821	A	A	106810821	3	1	168	1	0	0	0	0	1	0	0	0	6958	797	28	3	1647	3	GUCY1A2	11	106810821	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	129872	106810821	28195695	1295	138286											
CWF19L2	143884	broad.mit.edu	37	chr11	107275091	107275091	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccagacctttcagctgtaCctcatgtagggcatcagcag	9	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107275091	G	G	107275091	1	3	168	0	1	0	0	0	0	0	0	0	4105	522	18	4		4	CWF19L2	11	107275091	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	464270	107275091	27731425	1296	138287											
ELMOD1	55531	broad.mit.edu	37	chr11	107501444	107501444	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaaacatcactgagggattCtaaaagtaaggtaagtaaaa	9	4	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107501444	G	G	107501444	3	3	168	1	0	0	0	0	1	0	0	0	5110	913	32	4	192	4	ELMOD1	11	107501444	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	226353	107501444	27505072	1297	138288											
DDX10	1662	broad.mit.edu	37	chr11	108562509	108562509	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaattgggtatcacattgctCtgctgttgagactctgtggg	13	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108562509	T	T	108562509	1	4	168	0	1	0	0	0	0	0	0	0	4375	928	32	4		4	DDX10	11	108562509	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1061065	108562509	26444007	1298	138289											
PPP2R1B	5519	broad.mit.edu	37	chr11	111622952	111622952	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatttggcatcttctgcCagctccactatggcaggaag	9	13	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111622952	A	A	111622952	2	1	168	1	0	0	0	0	0	0	0	1	12484	581	21	2		2	PPP2R1B	11	111622952	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3060443	111622952	23383564	1299	138290											
USP28	57646	broad.mit.edu	37	chr11	113683217	113683217	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacaagaactgcatgcaagcGataaggcacctgtaagtcag	10	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113683217	A	A	113683217	3	1	168	1	0	0	0	0	1	0	0	0	17185	1058	37	4	1520	4	USP28	11	113683217	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2060265	113683217	21323299	1300	138291											
HTR3A	3359	broad.mit.edu	37	chr11	113860292	113860292	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgggaggcctcgctggcggTgtgtgggctgctgcaggagc	20	10	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113860292	G	G	113860292	3	3	168	1	0	0	0	0	1	0	0	0	7514	1696	59	5	1414	5	HTR3A	11	113860292	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	177075	113860292	21146224	1301	138292											
PCSK7	9159	broad.mit.edu	37	chr11	117099085	117099085	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtaagagagacaggatGggaatacagtgacacatagc	12	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117099085	A	A	117099085	1	1	168	0	1	0	0	0	0	0	0	0	11699	1363	47	4		4	PCSK7	11	117099085	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3238793	117099085	17907431	1302	138293											
CD3D	915	broad.mit.edu	37	chr11	118209937	118209937	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagcatcatctcgatctcgGaggggctaagagaggagaag	15	7	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118209937	A	A	118209937	2	1	168	1	0	0	0	0	0	0	0	1	3040	1161	41	4		4	CD3D	11	118209937	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1110852	118209937	16796579	1303	138294											
CD3D	915	broad.mit.edu	37	chr11	118209949	118209949	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgatctcggaggggctaagaGaggagaagagaaaacggtca	16	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118209949	A	A	118209949	1	1	168	0	1	0	0	0	0	0	0	0	3040	957	33	4		4	CD3D	11	118209949	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	12	118209949	16796567	1304	138295											
PHLDB1	23187	broad.mit.edu	37	chr11	118495567	118495567	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactcccgacctcaggtgatCcaccctcctccgcctccaaa	5	20	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118495567	A	A	118495567	1	1	168	0	1	0	0	0	0	0	0	0	11946	870	30	3		3	PHLDB1	11	118495567	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	285618	118495567	16510949	1305	138296											
TREH	11181	broad.mit.edu	37	chr11	118529778	118529778	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggtctcccatcccagacaGagcagtggctgcaccctact	9	16	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118529778	C	C	118529778	1	2	168	0	1	0	0	0	0	0	0	0	16593	957	33	4		4	TREH	11	118529778	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	34211	118529778	16476738	1306	138297											
FOXR1	283150	broad.mit.edu	37	chr11	118849643	118849643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagccagtgggctgtggCacacaatcttttgttctgca	10	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118849643	A	A	118849643	1	1	168	0	1	0	0	0	0	0	0	0	6091	725	25	3		3	FOXR1	11	118849643	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	319865	118849643	16156873	1307	138298											
H2AFX	3014	broad.mit.edu	37	chr11	118965693	118965693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtactcctgggaggcctGggtggccttcttgccgcccg	14	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118965693	T	T	118965693	3	4	168	1	0	0	0	0	1	0	0	0	6993	1357	47	2	23	2	H2AFX	11	118965693	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	116050	118965693	16040823	1308	138299											
PVRL1	5818	broad.mit.edu	37	chr11	119545239	119545239	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggtggggggggccctgtCcagggtcacagctgtctgac	18	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119545239	A	A	119545239	1	1	168	0	1	0	0	0	0	0	0	0	12947	870	30	3		3	PVRL1	11	119545239	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	579546	119545239	15461277	1309	138300											
POU2F3	25833	broad.mit.edu	37	chr11	120175779	120175779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggatcctctttagaacCccacctggaagcatcccagc	8	16	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120175779	A	A	120175779	3	1	168	1	0	0	0	0	1	0	0	0	12369	623	22	2	511	2	POU2F3	11	120175779	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	630540	120175779	14830737	1310	138301											
CRTAM	56253	broad.mit.edu	37	chr11	122720873	122720874	+	Missense_Mutation	DNP	CC	AA	AA													ctgaggaagaactcctccctCcagtggctgaccccctcagg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	122720874	AA	AA	122720873	3	1	168	1	0	0	0	0	1	0	0	0	3929	842	30	3	150	3	CRTAM	11	122720873	Missense_Mutation	DNP	CC	TCGA-50-6590-01A-12D-1855-08	2545094	122720873	12285643	1311	138302											
GRAMD1B	57476	broad.mit.edu	37	chr11	123469825	123469825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcgagccttcaggagCtcctcaaattccactgacat	6	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123469825	A	A	123469825	1	1	168	0	1	0	0	0	0	0	0	0	6814	812	28	3		3	GRAMD1B	11	123469825	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	748952	123469825	11536691	1312	138303											
ZNF202	7753	broad.mit.edu	37	chr11	123596630	123596630	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgaaaaggtcttcccaggctGacaagagggcttttcctctt	10	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123596630	A	A	123596630	1	1	168	0	1	0	0	0	0	0	0	0	17889	1305	45	4		4	ZNF202	11	123596630	3'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	126805	123596630	11409886	1313	138304											
OR10G9	219870	broad.mit.edu	37	chr11	123893745	123893745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaccagcctcgtgacagCgttcatcctcacgggccttc	9	16	2	2	rs79715120	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123893745	A	A	123893745	3	1	168	1	0	0	0	0	1	0	0	0	10998	768	27	3	28	3	OR10G9	11	123893745	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	297115	123893745	11112771	1314	138305											
OR10G9	219870	broad.mit.edu	37	chr11	123894622	123894622	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaaagctgtgttgaaactGagagacaaagtagcacattc	10	6	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123894622	T	T	123894622	2	4	168	1	0	0	0	0	0	0	0	1	10998	1277	45	3		3	OR10G9	11	123894622	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	877	123894622	11111894	1315	138306											
OR10G7	390265	broad.mit.edu	37	chr11	123909167	123909167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccagtttcaggatgggcGgtgcgtcacagaagtagtgc	16	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123909167	T	T	123909167	3	4	168	1	0	0	0	0	1	0	0	0	10996	1116	39	1	397	1	OR10G7	11	123909167	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	14545	123909167	11097349	1316	138307											
OR8B12	219858	broad.mit.edu	37	chr11	124413576	124413576	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggtcaggcaggagagtcgGaggggacaagagaagaggac	19	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124413576	C	C	124413576	1	2	168	0	1	0	0	0	0	0	0	0	11320	1189	41	4		4	OR8B12	11	124413576	5'Flank	SNP	G	TCGA-50-6590-01A-12D-1855-08	504409	124413576	10592940	1317	138308											
ROBO4	54538	broad.mit.edu	37	chr11	124763628	124763628	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtatatctgtacagaccTgggagaaggcaggaggaaag	15	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124763628	C	C	124763628	5	2	168	1	0	0	0	0	0	0	1	0	13627	1594	55	5	1556	5	ROBO4	11	124763628	Splice_Site	SNP	T	TCGA-50-6590-01A-12D-1855-08	350052	124763628	10242888	1318	138309											
HEPACAM	220296	broad.mit.edu	37	chr11	124794531	124794531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcccaagtgccttttggGttggttttccctcagtctag	10	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124794531	T	T	124794531	1	4	168	0	1	0	0	0	0	0	0	0	7119	1276	44	3		3	HEPACAM	11	124794531	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	30903	124794531	10211985	1319	138310											
STT3A	3703	broad.mit.edu	37	chr11	125484098	125484098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatttctcgagtagggcaGgtaagataaagggatgatct	12	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125484098	T	T	125484098	3	4	168	1	0	0	0	0	1	0	0	0	15451	1014	35	2	1721	2	STT3A	11	125484098	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	689567	125484098	9522418	1320	138311											
FOXRED1	55572	broad.mit.edu	37	chr11	126141434	126141434	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccacctgcctcccgagcActcggatgtggtgatcgtgg	13	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126141434	T	T	126141434	3	4	168	1	0	0	0	0	1	0	0	0	6093	159	6	5	194	5	FOXRED1	11	126141434	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	657336	126141434	8865082	1321	138312											
PRDM10	56980	broad.mit.edu	37	chr11	129785510	129785510	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctttccttaagagattcctCgcatggcggttttgacctta	8	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129785510	T	T	129785510	1	4	168	0	1	0	0	0	0	0	0	0	12557	899	31	4		4	PRDM10	11	129785510	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3644076	129785510	5221006	1322	138313											
ADAMTS15	170689	broad.mit.edu	37	chr11	130332435	130332435	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaagcccatctccctgccCgaggatctgccgggcgccag	12	17	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130332435	A	A	130332435	2	1	168	1	0	0	0	0	0	0	0	1	260	639	23	1		1	ADAMTS15	11	130332435	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	546925	130332435	4674081	1323	138314											
NTM	50863	broad.mit.edu	37	chr11	132180014	132180014	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttgcagatccaccaTacatttcagaagccaagggt	7	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132180014	C	C	132180014	3	2	168	1	0	0	0	0	1	0	0	0	10794	1406	49	5	774	5	NTM	11	132180014	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1847579	132180014	2826502	1324	138315											
IQSEC3	440073	broad.mit.edu	37	chr12	247543	247543	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcaagaacttcgagaaaatCcgcaactcgcttctggagag	10	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247543	A	A	247543	2	1	168	1	0	0	0	0	0	0	0	1	7889	845	30	3		3	IQSEC3	12	247543	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08		247543	133604352	1325	138316											
ERC1	23085	broad.mit.edu	37	chr12	1599149	1599149	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatggttaattttgatgcaGagagacttcacatacagagt	9	5	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1599149	C	C	1599149	1	2	168	0	1	0	0	0	0	0	0	0	5252	957	33	4		4	ERC1	12	1599149	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1351606	1599149	132252746	1326	138317											
CACNA1C	775	broad.mit.edu	37	chr12	2566801	2566801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctctcggagggaaaggggCcggatttgatgtgaaggcgc	18	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2566801	A	A	2566801	3	1	168	1	0	0	0	0	1	0	0	0	2566	739	26	3	704	3	CACNA1C	12	2566801	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	967652	2566801	131285094	1327	138318											
GALNT8	26290	broad.mit.edu	37	chr12	4854524	4854524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagggcaaggtgcttggaaCagctttatctgctctcccct	10	12	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4854524	T	T	4854524	1	4	168	0	1	0	0	0	0	0	0	0	6281	493	17	4		4	GALNT8	12	4854524	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2287723	4854524	128997371	1328	138319											
C12orf53	196500	broad.mit.edu	37	chr12	6804645	6804645	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggggcatcccaggccGgggtccccctcggggctcct	18	15	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6804645	T	T	6804645	2	4	168	1	0	0	0	0	0	0	0	1	1711	1115	39	1		1	C12orf53	12	6804645	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1950121	6804645	127047250	1329	138320											
TPI1	7167	broad.mit.edu	37	chr12	6978433	6978433	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcaacagctgattgggcaGaaagtggcccatgctctggc	12	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6978433	T	T	6978433	3	4	168	1	0	0	0	0	1	0	0	0	16527	933	33	3	461	3	TPI1	12	6978433	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	173788	6978433	126873462	1330	138321											
LRRC23	10233	broad.mit.edu	37	chr12	7021987	7021987	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgataacccatgcacggaCgaaaccagctaccgccagga	9	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7021987	T	T	7021987	2	4	168	1	0	0	0	0	0	0	0	1	9065	535	19	4		4	LRRC23	12	7021987	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	43554	7021987	126829908	1331	138322											
CD163	9332	broad.mit.edu	37	chr12	7647728	7647728	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacaggtaagtccaccccAttgccagttcttgcagtccc	7	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7647728	G	G	7647728	3	3	168	1	0	0	0	0	1	0	0	0	2997	217	8	5	2145	5	CD163	12	7647728	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	625741	7647728	126204167	1332	138323											
APOBEC1	339	broad.mit.edu	37	chr12	7818601	7818601	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccgcatctcaggcagttAtgggaatctgagctgtctgt	11	10	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7818601	G	G	7818601	1	3	168	0	1	0	0	0	0	0	0	0	789	464	16	5		5	APOBEC1	12	7818601	5'Flank	SNP	A	TCGA-50-6590-01A-12D-1855-08	170873	7818601	126033294	1333	138324											
C3AR1	719	broad.mit.edu	37	chr12	8212797	8212797	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccattgctaaacttctgcaAaaagatgaaaaaaatgttaa	6	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8212797	G	G	8212797	1	3	168	0	1	0	0	0	0	0	0	0	2227	29	1	5		5	C3AR1	12	8212797	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	394196	8212797	125639098	1334	138325											
CLEC12A	160364	broad.mit.edu	37	chr12	10133119	10133119	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtcacacagagaggaaagGaaataataagaattattatg	9	3	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10133119	A	A	10133119	1	1	168	0	1	0	0	0	0	0	0	0	3529	1189	41	4		4	CLEC12A	12	10133119	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1920322	10133119	123718776	1335	138326											
KLRD1	3824	broad.mit.edu	37	chr12	10464034	10464034	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgtctagtctccagtgtCattagtcatgctttatgttt	7	7	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10464034	T	T	10464034	1	4	168	0	1	0	0	0	0	0	0	0	8490	841	29	4		4	KLRD1	12	10464034	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	330915	10464034	123387861	1336	138327											
PRH1	5554	broad.mit.edu	37	chr12	11036773	11036773	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcatttaaatcctgagctGagctgaaggccagcagggcc	11	11	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11036773	A	A	11036773	3	1	168	1	0	0	0	0	1	0	0	0	12588	1294	45	4	472	4	PRH1	12	11036773	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	572739	11036773	122815122	1337	138328											
CDKN1B	1027	broad.mit.edu	37	chr12	12870860	12870866	+	Frame_Shift_Del	DEL	CAGGAAC	-	-													caccccaagccctcggcctgCaggaacctcttcggcccggt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12870866	-	-	12870860	7	5	168	1	0	1	0	1	0	0	0	0	3189	718	25	0	89	0	CDKN1B	12	12870860	Frame_Shift_Del	DEL	CAGGAAC	TCGA-50-6590-01A-12D-1855-08	1834087	12870860	120981035	1338	138329											
KIAA1467	57613	broad.mit.edu	37	chr12	13228955	13228955	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcctttttgctgcttattAtcaggatatcatcctaggaa	6	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13228955	T	T	13228955	1	4	168	0	1	0	0	0	0	0	0	0	8305	464	16	5		5	KIAA1467	12	13228955	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	358095	13228955	120622940	1339	138330											
ATF7IP	55729	broad.mit.edu	37	chr12	14609578	14609578	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtcttacaggtgagaattCatagtctgtctagtttttaa	8	5	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14609578	T	T	14609578	1	4	168	0	1	0	0	0	0	0	0	0	1091	841	29	4		4	ATF7IP	12	14609578	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1380623	14609578	119242317	1340	138331											
ATF7IP	55729	broad.mit.edu	37	chr12	14610174	14610175	+	Frame_Shift_Ins	INS	-	A	A													tgagacagatgctggagtccINSaaaagaaatgtaagcgagag							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14610175	A	A	14610174	7	5	168	1	0	1	1	0	0	0	0	0	1091	581	21	0	2129	0	ATF7IP	12	14610174	Frame_Shift_Ins	INS	-	TCGA-50-6590-01A-12D-1855-08	596	14610174	119241721	1341	138332											
PTPRO	5800	broad.mit.edu	37	chr12	15652344	15652344	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgatgtttagaagaccaTatttttcatgtaattgattt	8	3	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15652344	C	C	15652344	1	2	168	0	1	0	0	0	0	0	0	0	12917	1421	49	5		5	PTPRO	12	15652344	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1042170	15652344	118199551	1342	138333											
PIK3C2G	5288	broad.mit.edu	37	chr12	18715656	18715656	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaaataaaggaaagtctgGagtgtttccctgttaaattg	11	4	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18715656	T	T	18715656	4	4	168	1	0	0	0	0	0	1	0	0	12006	1175	41	3	3585	3	PIK3C2G	12	18715656	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3063312	18715656	115136239	1343	138334											
SLCO1C1	53919	broad.mit.edu	37	chr12	20885915	20885915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaaaaaattcagaatcaGtgtgtgtggagctgcaaaac	10	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20885915	T	T	20885915	3	4	168	1	0	0	0	0	1	0	0	0	14839	1029	36	3	1293	3	SLCO1C1	12	20885915	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2170259	20885915	112965980	1344	138335											
GOLT1B	51026	broad.mit.edu	37	chr12	21659867	21659867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgtttttcctgttctttgGaatgattctcttttttgaca	7	6	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21659867	T	T	21659867	3	4	168	1	0	0	0	0	1	0	0	0	6635	1174	41	3	80	3	GOLT1B	12	21659867	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	773952	21659867	112192028	1345	138336											
C12orf39	80763	broad.mit.edu	37	chr12	21680173	21680173	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaataatggaagacccctAggagtcaggaacagatagat	10	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21680173	T	T	21680173	1	4	168	0	1	0	0	0	0	0	0	0	1697	435	15	5		5	C12orf39	12	21680173	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	20306	21680173	112171722	1346	138337											
KCNJ8	3764	broad.mit.edu	37	chr12	21918522	21918522	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactacagaaagtgctgttgCttgaatatgaatatcattta	7	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21918522	A	A	21918522	1	1	168	0	1	0	0	0	0	0	0	0	8126	812	28	3		3	KCNJ8	12	21918522	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	238349	21918522	111933373	1347	138338											
PPFIBP1	8496	broad.mit.edu	37	chr12	27835728	27835728	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaacacagtgttttcagtGattccaccagagtttgaagc	8	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27835728	T	T	27835728	1	4	168	0	1	0	0	0	0	0	0	0	12409	1305	45	3		3	PPFIBP1	12	27835728	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	5917206	27835728	106016167	1348	138339											
KLHDC5	57542	broad.mit.edu	37	chr12	27933771	27933771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccagttccacctcctgGggtctcctccccaagctcca	7	20	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27933771	T	T	27933771	3	4	168	1	0	0	0	0	1	0	0	0	8430	1232	43	2	510	2	KLHDC5	12	27933771	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	98043	27933771	105918124	1349	138340											
BICD1	636	broad.mit.edu	37	chr12	32480545	32480545	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggcctgcaaagcagcaagGagctcaaggctgagctggac	16	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32480545	C	C	32480545	3	2	168	1	0	0	0	0	1	0	0	0	1434	1175	41	4	1174	4	BICD1	12	32480545	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4546774	32480545	101371350	1350	138341											
SYT10	341359	broad.mit.edu	37	chr12	33560369	33560369	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatacagtgacatataaactCttccccacccccagaatagt	4	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33560369	G	G	33560369	1	3	168	0	1	0	0	0	0	0	0	0	15585	928	32	4		4	SYT10	12	33560369	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1079824	33560369	100291526	1351	138342											
LRRK2	120892	broad.mit.edu	37	chr12	40643696	40643696	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagctgtgcagcagtacCcagagaatgcagcattgcag	12	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40643696	G	G	40643696	3	3	168	1	0	0	0	0	1	0	0	0	9120	623	22	4	937	4	LRRK2	12	40643696	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	7083327	40643696	93208199	1352	138343											
CNTN1	1272	broad.mit.edu	37	chr12	41410554	41410554	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttaagccatttgatggagAagaatggaaaaaagtcacag	10	4	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41410554	T	T	41410554	3	4	168	1	0	0	0	0	1	0	0	0	3672	246	9	5	2325	5	CNTN1	12	41410554	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	766858	41410554	92441341	1353	138344											
PDZRN4	29951	broad.mit.edu	37	chr12	41957357	41957357	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttgttttctagataaatgGggaagatgtccagaatcgag	11	4	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41957357	C	C	41957357	3	2	168	1	0	0	0	0	1	0	0	0	11804	1232	43	4	1476	4	PDZRN4	12	41957357	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	546803	41957357	91894538	1354	138345											
PPHLN1	51535	broad.mit.edu	37	chr12	42792875	42792875	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatttattgaataaatatGcttcatttctttttccacct	2	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42792875	A	A	42792875	1	1	168	0	1	0	0	0	0	0	0	0	12411	1334	46	4		4	PPHLN1	12	42792875	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	835518	42792875	91059020	1355	138346											
NELL2	4753	broad.mit.edu	37	chr12	45059341	45059341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaacccggggtgttgacaCacattgtattttcacgacag	10	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45059341	A	A	45059341	3	1	168	1	0	0	0	0	1	0	0	0	10429	478	17	3	1112	3	NELL2	12	45059341	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2266466	45059341	88792554	1356	138347											
NELL2	4753	broad.mit.edu	37	chr12	45169922	45169922	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatctattcattcgctgttcAgctcgagacagctgtggcac	9	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45169922	T	T	45169922	2	4	168	1	0	0	0	0	0	0	0	1	10429	175	7	5		5	NELL2	12	45169922	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	110581	45169922	88681973	1357	138348											
RPAP3	79657	broad.mit.edu	37	chr12	48091454	48091454	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgactctgattcttgagacaGagactcatgggtactatcgt	10	9	3	3	rs151225713	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48091454	C	C	48091454	3	2	168	1	0	0	0	0	1	0	0	0	13654	933	33	4	1710	4	RPAP3	12	48091454	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2921532	48091454	85760441	1358	138349											
BIN2	51411	broad.mit.edu	37	chr12	51689810	51689810	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcatctgtctagcattAgagtccagggtcctgtcccg	9	13	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51689810	G	G	51689810	1	3	168	0	1	0	0	0	0	0	0	0	1439	435	15	5		5	BIN2	12	51689810	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	3598356	51689810	82162085	1359	138350											
SCN8A	6334	broad.mit.edu	37	chr12	52180553	52180553	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacagagatcagatggaaGaacgtgaagatcaactttga	10	5	2	6			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52180553	C	C	52180553	3	2	168	1	0	0	0	0	1	0	0	0	14037	933	33	4	4252	4	SCN8A	12	52180553	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	490743	52180553	81671342	1360	138351											
ACVRL1	94	broad.mit.edu	37	chr12	52306955	52306955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacattgcaaggggcctaCctgccggggggcctggtgca	15	14	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52306955	A	A	52306955	3	1	168	1	0	0	0	0	1	0	0	0	225	507	18	3	140	3	ACVRL1	12	52306955	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	126402	52306955	81544940	1361	138352											
KRT2	3849	broad.mit.edu	37	chr12	53040844	53040844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccactggccctgggagtGttaggtcccctctggagttt	13	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53040844	T	T	53040844	1	4	168	0	1	0	0	0	0	0	0	0	8528	1392	48	3		3	KRT2	12	53040844	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	733889	53040844	80811051	1362	138353											
ESPL1	9700	broad.mit.edu	37	chr12	53663690	53663690	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcaaggcatcagctgtcCtgagcaagagtatggaggca	13	8	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53663690	T	T	53663690	2	4	168	1	0	0	0	0	0	0	0	1	5295	680	24	4		4	ESPL1	12	53663690	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	622846	53663690	80188205	1363	138354											
OR6C76	390326	broad.mit.edu	37	chr12	55820153	55820153	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtatgtactgagtgttactgGaaatctaactatcatctccc	7	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55820153	A	A	55820153	3	1	168	1	0	0	0	0	1	0	0	0	11294	1174	41	4	118	4	OR6C76	12	55820153	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2156463	55820153	78031742	1364	138355											
METTL7B	196410	broad.mit.edu	37	chr12	56075645	56075645	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctgtgcaaaagctactTcccctacctgatggccgtgc	9	16	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56075645	C	C	56075645	3	2	168	1	0	0	0	0	1	0	0	0	9599	1783	62	5	109	5	METTL7B	12	56075645	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	255492	56075645	77776250	1365	138356											
ESYT1	23344	broad.mit.edu	37	chr12	56525880	56525880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagcacaaaggattttcaCaaaaggactttcttacagct	7	8	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56525880	A	A	56525880	1	1	168	0	1	0	0	0	0	0	0	0	5306	493	17	3		3	ESYT1	12	56525880	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	450235	56525880	77326015	1366	138357											
ESYT1	23344	broad.mit.edu	37	chr12	56532702	56532702	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactgatcataagccctcatCtccaccagactatttcgcaa	4	14	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56532702	G	G	56532702	1	3	168	0	1	0	0	0	0	0	0	0	5306	928	32	4		4	ESYT1	12	56532702	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	6822	56532702	77319193	1367	138358											
MYO1A	4640	broad.mit.edu	37	chr12	57423272	57423272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctggtgactgacacccCagccacattgtctagcccaa	10	14	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57423272	A	A	57423272	3	1	168	1	0	0	0	0	1	0	0	0	10162	594	21	2	319	2	MYO1A	12	57423272	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	890570	57423272	76428623	1368	138359											
GLI1	2735	broad.mit.edu	37	chr12	57865470	57865470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggggcaaatagggcttcaCatagggcagcagcaccacct	13	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57865470	T	T	57865470	3	4	168	1	0	0	0	0	1	0	0	0	6501	478	17	4	2989	4	GLI1	12	57865470	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	442198	57865470	75986425	1369	138360											
ARHGAP9	64333	broad.mit.edu	37	chr12	57870482	57870482	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtcaccctcgccctccatAgtggccacggctttccctag	8	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57870482	T	T	57870482	1	4	168	0	1	0	0	0	0	0	0	0	891	435	15	5		5	ARHGAP9	12	57870482	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	5012	57870482	75981413	1370	138361											
CDK4	1019	broad.mit.edu	37	chr12	58145275	58145275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcccaaccctccaccacCttctcaccggacaacattgg	5	20	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58145275	A	A	58145275	1	1	168	0	1	0	0	0	0	0	0	0	3171	696	24	2		2	CDK4	12	58145275	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	274793	58145275	75706620	1371	138362											
CAND1	55832	broad.mit.edu	37	chr12	67699249	67699249	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaattatttgcaaccttGgagacaatttgggttctgac	9	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67699249	T	T	67699249	4	4	168	1	0	0	0	0	0	1	0	0	2641	1349	47	2	1839	2	CAND1	12	67699249	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	9553974	67699249	66152646	1372	138363											
KCNMB4	27345	broad.mit.edu	37	chr12	70794139	70794139	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtcaatatttgcatgtgcGtgttaaaattgtttgtagac	9	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70794139	A	A	70794139	1	1	168	0	1	0	0	0	0	0	0	0	8147	1160	40	4		4	KCNMB4	12	70794139	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3094890	70794139	63057756	1373	138364											
PTPRB	5787	broad.mit.edu	37	chr12	70949641	70949641	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctgtgcgcacctccaggGacacttacggtctatcattg	10	13	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70949641	T	T	70949641	1	4	168	0	1	0	0	0	0	0	0	0	12904	1189	41	3		3	PTPRB	12	70949641	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	155502	70949641	62902254	1374	138365											
PTPRB	5787	broad.mit.edu	37	chr12	70949987	70949987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaatttttttttttcaGctcctttgggtccaactagc	9	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70949987	T	T	70949987	1	4	168	0	1	0	0	0	0	0	0	0	12904	986	34	3		3	PTPRB	12	70949987	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	346	70949987	62901908	1375	138366											
PTPRB	5787	broad.mit.edu	37	chr12	70954555	70954555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgaaaccgccactccGtcaggtccttgtctttccag	9	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70954555	T	T	70954555	3	4	168	1	0	0	0	0	1	0	0	0	12904	1145	40	3	2391	3	PTPRB	12	70954555	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4568	70954555	62897340	1376	138367											
TPH2	121278	broad.mit.edu	37	chr12	72355294	72355294	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaagatgtatctgattaAatctgtgactcttcattctt	7	7	5	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72355294	T	T	72355294	1	4	168	0	1	0	0	0	0	0	0	0	16526	29	1	5		5	TPH2	12	72355294	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1400739	72355294	61496601	1377	138368											
E2F7	144455	broad.mit.edu	37	chr12	77423600	77423600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccagacacatccacctgCactcccttaccttgggcatg	6	17	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77423600	A	A	77423600	1	1	168	0	1	0	0	0	0	0	0	0	4912	725	25	3		3	E2F7	12	77423600	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5068306	77423600	56428295	1378	138369											
PPFIA2	8499	broad.mit.edu	37	chr12	81732894	81732894	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatgaaatgaaatgaaagaTagatggatactgtgacatga	10	3	0	7			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81732894	A	A	81732894	1	1	168	0	1	0	0	0	0	0	0	0	12406	1421	49	5		5	PPFIA2	12	81732894	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	4309294	81732894	52119001	1379	138370											
LRRIQ1	84125	broad.mit.edu	37	chr12	85626523	85626523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacttaatggtggaagaGttcagcttgtggtaagaaat	12	3	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85626523	T	T	85626523	3	4	168	1	0	0	0	0	1	0	0	0	9116	1029	36	3	5107	3	LRRIQ1	12	85626523	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3893629	85626523	48225372	1380	138371											
MGAT4C	25834	broad.mit.edu	37	chr12	86373386	86373386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaacatctcctgttgaaGgtggtttcccccaaaagtac	7	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86373386	T	T	86373386	3	4	168	1	0	0	0	0	1	0	0	0	9640	1000	35	2	322	2	MGAT4C	12	86373386	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	746863	86373386	47478509	1381	138372											
TMTC3	160418	broad.mit.edu	37	chr12	88568469	88568469	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccacagaaattgggattggGagtctgaatatacattgttt	10	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88568469	C	C	88568469	3	2	168	1	0	0	0	0	1	0	0	0	16385	1175	41	4	1315	4	TMTC3	12	88568469	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2195083	88568469	45283426	1382	138373											
TMCC3	57458	broad.mit.edu	37	chr12	94976067	94976067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaagacttgcttgatacgtCccgcctgctgcttgtctgcg	10	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94976067	A	A	94976067	3	1	168	1	0	0	0	0	1	0	0	0	16117	855	30	3	1119	3	TMCC3	12	94976067	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	6407598	94976067	38875828	1383	138374											
SLC17A8	246213	broad.mit.edu	37	chr12	100795395	100795395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttcctctcctggaagcCctgttctgtggcacactggg	11	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100795395	A	A	100795395	1	1	168	0	1	0	0	0	0	0	0	0	14536	638	22	2		2	SLC17A8	12	100795395	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5819328	100795395	33056500	1384	138375											
ANO4	121601	broad.mit.edu	37	chr12	101381203	101381203	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatatcctgagtgcagtgAgagggcctggaatgtgtggt	17	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101381203	T	T	101381203	1	4	168	0	1	0	0	0	0	0	0	0	699	319	11	5		5	ANO4	12	101381203	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	585808	101381203	32470692	1385	138376											
ANO4	121601	broad.mit.edu	37	chr12	101413969	101413969	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttggcatttgggaattacaGacttcttcccttggttttat	8	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101413969	T	T	101413969	1	4	168	0	1	0	0	0	0	0	0	0	699	957	33	3		3	ANO4	12	101413969	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	32766	101413969	32437926	1386	138377											
SLC5A8	160728	broad.mit.edu	37	chr12	101603519	101603519	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaggtctgctggccgccCccagcgaaggcgtagtagat	15	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101603519	A	A	101603519	2	1	168	1	0	0	0	0	0	0	0	1	14785	610	22	2		2	SLC5A8	12	101603519	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	189550	101603519	32248376	1387	138378											
SLC5A8	160728	broad.mit.edu	37	chr12	101603667	101603667	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgcgcaaactggtggcCccgcggcgcgcagccggagc	16	17	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101603667	G	G	101603667	1	3	168	0	1	0	0	0	0	0	0	0	14785	638	22	4		4	SLC5A8	12	101603667	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	148	101603667	32248228	1388	138379											
PAH	5053	broad.mit.edu	37	chr12	103240674	103240674	+	Missense_Mutation	SNP	G	T	T													agggagagaagggacttactGtggcgagcttttcaatgtat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103240674	T	T	103240674	3	4	168	1	0	0	0	0	1	0	0	0	11488	1391	48	3	410	3	PAH	12	103240674	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1637007	103240674	30611221	1389	138380	594	2									
PAH	5053	broad.mit.edu	37	chr12	103240676	103240676	+	Silent	SNP	G	T	T													ggagagaagggacttactgtGgcgagcttttcaatgtattc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103240676	T	T	103240676	2	4	168	1	0	0	0	0	0	0	0	1	11488	1335	47	2		2	PAH	12	103240676	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2	103240676	30611219	1390	138381	594	2									
NFYB	4801	broad.mit.edu	37	chr12	104519783	104519783	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagaaatatttgatttgctGaaagcctgaatgattgaaat	8	3	0	6			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104519783	A	A	104519783	1	1	168	0	1	0	0	0	0	0	0	0	10485	1305	45	4		4	NFYB	12	104519783	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1279107	104519783	29332112	1391	138382											
RFX4	5992	broad.mit.edu	37	chr12	107048028	107048028	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagaactatgagattGcagagggggtctgcatccct	15	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107048028	A	A	107048028	3	1	168	1	0	0	0	0	1	0	0	0	13373	1319	46	4	302	4	RFX4	12	107048028	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2528245	107048028	26803867	1392	138383											
BTBD11	121551	broad.mit.edu	37	chr12	107937726	107937726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaggtgacctggtgtccCgtgcaatgcatcacctgcag	11	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107937726	A	A	107937726	3	1	168	1	0	0	0	0	1	0	0	0	1548	652	23	1	1310	1	BTBD11	12	107937726	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	889698	107937726	25914169	1393	138384											
WSCD2	9671	broad.mit.edu	37	chr12	108620678	108620678	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacagagaagacagtggttGaaatgcaaatcctgttctcc	10	8	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108620678	C	C	108620678	1	2	168	0	1	0	0	0	0	0	0	0	17534	1305	45	4		4	WSCD2	12	108620678	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	682952	108620678	25231217	1394	138385											
WSCD2	9671	broad.mit.edu	37	chr12	108634280	108634280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaaccgcaagtacggcgGccacataggctttgctgcgc	12	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108634280	T	T	108634280	3	4	168	1	0	0	0	0	1	0	0	0	17534	1203	42	3	1330	3	WSCD2	12	108634280	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	13602	108634280	25217615	1395	138386											
GLTP	51228	broad.mit.edu	37	chr12	110290384	110290384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgtagttaagctcagcGttcatctgggtgtacatctc	9	10	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110290384	T	T	110290384	3	4	168	1	0	0	0	0	1	0	0	0	6535	1136	40	3	27	3	GLTP	12	110290384	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1656104	110290384	23561511	1396	138387											
MYL2	4633	broad.mit.edu	37	chr12	111358181	111358181	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcattgattggggttcctCtgtgcccgcgcagtcaatgg	15	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111358181	T	T	111358181	1	4	168	0	1	0	0	0	0	0	0	0	10141	928	32	4		4	MYL2	12	111358181	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1067797	111358181	22493714	1397	138388											
TMEM116	89894	broad.mit.edu	37	chr12	112371823	112371823	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttatacaatgtctgggctcgGataagtaagacctaaatatg	9	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112371823	C	C	112371823	3	2	168	1	0	0	0	0	1	0	0	0	16153	1164	41	4	425	4	TMEM116	12	112371823	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1013642	112371823	21480072	1398	138389											
RPH3A	22895	broad.mit.edu	37	chr12	113307716	113307716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccctgacccagcctctgCtcccgggcgaggaaactatg	12	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113307716	A	A	113307716	3	1	168	1	0	0	0	0	1	0	0	0	13662	797	28	3	698	3	RPH3A	12	113307716	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	935893	113307716	20544179	1399	138390											
PLBD2	196463	broad.mit.edu	37	chr12	113822053	113822053	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctgggcagacatcttcaaGaggttcaacagcggcacgtg	12	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113822053	A	A	113822053	2	1	168	1	0	0	0	0	0	0	0	1	12121	933	33	4		4	PLBD2	12	113822053	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	514337	113822053	20029842	1400	138391											
KSR2	283455	broad.mit.edu	37	chr12	117992964	117992964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgagacccaggggaagcCcagccttaccttgttgattt	11	12	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117992964	A	A	117992964	1	1	168	0	1	0	0	0	0	0	0	0	8654	638	22	2		2	KSR2	12	117992964	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4170911	117992964	15858931	1401	138392											
GCN1L1	10985	broad.mit.edu	37	chr12	120592790	120592790	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacctggcttcccactgatCtggaggagattctgaaataa	9	9	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120592790	G	G	120592790	3	3	168	1	0	0	0	0	1	0	0	0	6361	913	32	4	4442	4	GCN1L1	12	120592790	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2599826	120592790	13259105	1402	138393											
MSI1	4440	broad.mit.edu	37	chr12	120785154	120785154	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgaatgaacaagtgtcccTctgcaaaggggtggcagtgg	15	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120785154	A	A	120785154	1	1	168	0	1	0	0	0	0	0	0	0	9969	1566	54	5		5	MSI1	12	120785154	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	192364	120785154	13066741	1403	138394											
KNTC1	9735	broad.mit.edu	37	chr12	123097813	123097813	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaattgtattaagaaatagGaaacagatcattttttggag	8	2	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123097813	A	A	123097813	1	1	168	0	1	0	0	0	0	0	0	0	8499	1189	41	4		4	KNTC1	12	123097813	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2312659	123097813	10754082	1404	138395											
KNTC1	9735	broad.mit.edu	37	chr12	123098300	123098300	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtggaaaaaccacagccacGagtccatggtaggtacacct	10	11	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123098300	A	A	123098300	3	1	168	1	0	0	0	0	1	0	0	0	8499	1059	37	4	6083	4	KNTC1	12	123098300	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	487	123098300	10753595	1405	138396											
KNTC1	9735	broad.mit.edu	37	chr12	123098362	123098362	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcccctactcagaatcctGaaagagaaaaccaggaacag	8	12	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123098362	T	T	123098362	1	4	168	0	1	0	0	0	0	0	0	0	8499	1305	45	3		3	KNTC1	12	123098362	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	62	123098362	10753533	1406	138397											
GTF2H3	2967	broad.mit.edu	37	chr12	124144730	124144730	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggacagcctttaaaatttCtctgcctccagtgctgaaag	8	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124144730	G	G	124144730	3	3	168	1	0	0	0	0	1	0	0	0	6929	913	32	4	925	4	GTF2H3	12	124144730	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1046368	124144730	9707165	1407	138398											
DNAH10	196385	broad.mit.edu	37	chr12	124274537	124274537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgacgggggaccccaagCgcattgatgatgtcctatgc	13	11	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124274537	A	A	124274537	3	1	168	1	0	0	0	0	1	0	0	0	4638	768	27	3	1543	3	DNAH10	12	124274537	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	129807	124274537	9577358	1408	138399											
NCOR2	9612	broad.mit.edu	37	chr12	124922574	124922574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcggcagacaggtcagCccggccgggctcaggcgctg	18	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124922574	A	A	124922574	1	1	168	0	1	0	0	0	0	0	0	0	10331	754	26	3		3	NCOR2	12	124922574	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	648037	124922574	8929321	1409	138400											
DHX37	57647	broad.mit.edu	37	chr12	125441676	125441676	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcgtcgggaaggggaagttGatgacctgggacacaaggag	19	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125441676	A	A	125441676	2	1	168	1	0	0	0	0	0	0	0	1	4550	1280	45	4		4	DHX37	12	125441676	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	519102	125441676	8410219	1410	138401											
PIWIL1	9271	broad.mit.edu	37	chr12	130831590	130831590	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacttgtttgcagttctaTaatattattttcaggaggta	7	6	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130831590	A	A	130831590	4	1	168	1	0	0	0	0	0	1	0	0	12052	1413	49	5	654	5	PIWIL1	12	130831590	Nonsense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	5389914	130831590	3020305	1411	138402											
GPR133	283383	broad.mit.edu	37	chr12	131622690	131622690	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgctttcaaggtgagagcCgccttcaagcacaaaaccaa	8	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131622690	G	G	131622690	2	3	168	1	0	0	0	0	0	0	0	1	6708	639	23	4		4	GPR133	12	131622690	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	791100	131622690	2229205	1412	138403											
GOLGA3	2802	broad.mit.edu	37	chr12	133357432	133357432	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccttctctagtgaggcCtgcagggcctggacaagatg	12	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133357432	T	T	133357432	2	4	168	1	0	0	0	0	0	0	0	1	6618	680	24	4		4	GOLGA3	12	133357432	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1734742	133357432	494463	1413	138404											
TPTE2	93492	broad.mit.edu	37	chr13	20066854	20066854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtttccactttgtgcatGggtttgtttgtgtaaatgtg	13	4	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20066854	T	T	20066854	1	4	168	0	1	0	0	0	0	0	0	0	16555	1363	47	2		2	TPTE2	13	20066854	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08		20066854	95103024	1414	138405											
MTUS2	23281	broad.mit.edu	37	chr13	29598829	29598829	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcagccccaccaaaggGttgacaatgagcgtcccagt	11	13	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29598829	C	C	29598829	2	2	168	1	0	0	0	0	0	0	0	1	10060	1248	44	4		4	MTUS2	13	29598829	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	9531975	29598829	85571049	1415	138406											
STARD13	90627	broad.mit.edu	37	chr13	33704305	33704305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccgtgcctcccggtgacCcatttctgtctcctcgaggg	10	17	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33704305	A	A	33704305	3	1	168	1	0	0	0	0	1	0	0	0	15374	623	22	2	2872	2	STARD13	13	33704305	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4105476	33704305	81465573	1416	138407											
FREM2	341640	broad.mit.edu	37	chr13	39448686	39448686	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgcacttcaagacagaGgctcagttccatggcttatt	10	11	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39448686	A	A	39448686	2	1	168	1	0	0	0	0	0	0	0	1	6105	991	35	4		4	FREM2	13	39448686	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	5744381	39448686	75721192	1417	138408											
CCDC122	160857	broad.mit.edu	37	chr13	44442842	44442842	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagttaccttcaaattgaaCagaacctttttgtttttttc	5	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44442842	G	G	44442842	2	3	168	1	0	0	0	0	0	0	0	1	2784	465	17	4		4	CCDC122	13	44442842	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	4994156	44442842	70727036	1418	138409											
CPB2	1361	broad.mit.edu	37	chr13	46656575	46656575	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagctgtgtgatggcttaCttcatttagtgagtgatact	11	5	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46656575	T	T	46656575	5	4	168	1	0	0	0	0	0	0	1	0	3829	579	20	4	918	4	CPB2	13	46656575	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	2213733	46656575	68513303	1419	138410											
LRCH1	23143	broad.mit.edu	37	chr13	47303002	47303002	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcattgagatgagattgaaGgtcagtctacacgaagacct	11	7	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47303002	C	C	47303002	3	2	168	1	0	0	0	0	1	0	0	0	9019	991	35	4	1960	4	LRCH1	13	47303002	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	646427	47303002	67866876	1420	138411											
PCDH17	27253	broad.mit.edu	37	chr13	58208522	58208522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgtgcgcgccctagaCagcgacttcggcgagagcgg	15	13	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58208522	A	A	58208522	3	1	168	1	0	0	0	0	1	0	0	0	11606	477	17	3	1844	3	PCDH17	13	58208522	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	10905520	58208522	56961356	1421	138412											
PCDH20	64881	broad.mit.edu	37	chr13	61986893	61986893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgcaatgggagtgttaaCgggttccagttctttcagat	11	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61986893	A	A	61986893	3	1	168	1	0	0	0	0	1	0	0	0	11609	536	19	3	1520	3	PCDH20	13	61986893	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3778371	61986893	53182985	1422	138413											
SLITRK1	114798	broad.mit.edu	37	chr13	84453626	84453626	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgtaaggcccattgtgccAgtaggaagagtcacagactg	13	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84453626	T	T	84453626	3	4	168	1	0	0	0	0	1	0	0	0	14856	188	7	5	77	5	SLITRK1	13	84453626	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	22466733	84453626	30716252	1423	138414											
UGGT2	55757	broad.mit.edu	37	chr13	96489554	96489554	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagttagactgtaaacagatCataaaacatatgcaaatctg	6	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96489554	A	A	96489554	1	1	168	0	1	0	0	0	0	0	0	0	17068	841	29	3		3	UGGT2	13	96489554	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	12035928	96489554	18680324	1424	138415											
OXGR1	27199	broad.mit.edu	37	chr13	97639078	97639078	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctcactgttgagcagacAgcctgctgaaagttgtcgct	10	11	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97639078	G	G	97639078	2	3	168	1	0	0	0	0	0	0	0	1	11426	175	7	5		5	OXGR1	13	97639078	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	1149524	97639078	17530800	1425	138416											
NALCN	259232	broad.mit.edu	37	chr13	101833786	101833786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtttttgtttttaatGcatgtaatgcagcaagttta	9	3	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101833786	T	T	101833786	1	4	168	0	1	0	0	0	0	0	0	0	10242	1334	46	3		3	NALCN	13	101833786	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4194708	101833786	13336092	1426	138417											
TPP2	7174	broad.mit.edu	37	chr13	103295796	103295796	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtatgggctaagactaagtAtttgcatttgattttatagt	10	3	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103295796	G	G	103295796	1	3	168	0	1	0	0	0	0	0	0	0	16536	464	16	5		5	TPP2	13	103295796	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1462010	103295796	11874082	1427	138418											
ERCC5	2073	broad.mit.edu	37	chr13	103468881	103468881	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttgaagatattaaacagcgGaaagtattagacctcagacg	9	7	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103468881	C	C	103468881	2	2	168	1	0	0	0	0	0	0	0	1	5258	1161	41	4		4	ERCC5	13	103468881	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	173085	103468881	11700997	1428	138419											
ERCC5	2073	broad.mit.edu	37	chr13	103483796	103483796	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcttgtttttccccagcAgtgtcagtgtattccaagta	8	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103483796	T	T	103483796	1	4	168	0	1	0	0	0	0	0	0	0	5258	203	7	5		5	ERCC5	13	103483796	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	14915	103483796	11686082	1429	138420											
ERCC5	2073	broad.mit.edu	37	chr13	103518145	103518145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagggagggagaagcccctGctgagtccgagagcctcctg	15	12	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103518145	T	T	103518145	3	4	168	1	0	0	0	0	1	0	0	0	5258	1319	46	3	2117	3	ERCC5	13	103518145	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	34349	103518145	11651733	1430	138421											
MYO16	23026	broad.mit.edu	37	chr13	109475688	109475688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctggtcattttagagcCcatattaagtctgactctca	7	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109475688	A	A	109475688	1	1	168	0	1	0	0	0	0	0	0	0	10158	638	22	2		2	MYO16	13	109475688	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5957543	109475688	5694190	1431	138422											
MYO16	23026	broad.mit.edu	37	chr13	109777466	109777466	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccttctataaaagttatcaGaggatttttagcacgccagc	7	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109777466	A	A	109777466	3	1	168	1	0	0	0	0	1	0	0	0	10158	942	33	4	3590	4	MYO16	13	109777466	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	301778	109777466	5392412	1432	138423											
ING1	3621	broad.mit.edu	37	chr13	111367917	111367918	+	Missense_Mutation	DNP	GG	TT	TT													gtcttcttttttctttttcgGggaggagcggggtggagggt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	111367918	TT	TT	111367917	3	4	168	1	0	0	0	0	1	0	0	0	7805	1232	43	2	277	2	ING1	13	111367917	Missense_Mutation	DNP	GG	TCGA-50-6590-01A-12D-1855-08	1590451	111367917	3801961	1433	138424											
C13orf16	121793	broad.mit.edu	37	chr13	111973159	111973159	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagccgcccgctccccaaacGacgtccccagggccccgccc	10	23	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111973159	T	T	111973159	1	4	168	0	1	0	0	0	0	0	0	0	1732	1073	37	3		3	C13orf16	13	111973159	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	605242	111973159	3196719	1434	138425											
RASA3	22821	broad.mit.edu	37	chr13	114784223	114784223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccacacccacaggccaCggcgtggacaagcacctcca	9	19	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114784223	A	A	114784223	1	1	168	0	1	0	0	0	0	0	0	0	13170	551	19	3		3	RASA3	13	114784223	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2811064	114784223	385655	1435	138426											
OR4N2	390429	broad.mit.edu	37	chr14	20295722	20295722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatattctacttcatcatcCtccctggaaattttctcatt	2	11	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20295722	A	A	20295722	3	1	168	1	0	0	0	0	1	0	0	0	11171	681	24	2	117	2	OR4N2	14	20295722	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08		20295722	87053818	1436	138427											
OR4N2	390429	broad.mit.edu	37	chr14	20296242	20296242	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgacactcctgtgctttcTggggcttctggcctcctatg	11	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20296242	A	A	20296242	3	1	168	1	0	0	0	0	1	0	0	0	11171	1580	55	5	637	5	OR4N2	14	20296242	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	520	20296242	87053298	1437	138428											
METT11D1	64745	broad.mit.edu	37	chr14	21463281	21463281	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctactgacatttatactttcGtgtaattcaagtcttctgca	5	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21463281	C	C	21463281	1	2	168	0	1	0	0	0	0	0	0	0	9584	1160	40	4		4	METT11D1	14	21463281	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1167039	21463281	85886259	1438	138429											
PRMT5	10419	broad.mit.edu	37	chr14	23397456	23397456	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaaagacaaatactgaaTaaggttcagcactttacttg	7	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23397456	G	G	23397456	1	3	168	0	1	0	0	0	0	0	0	0	12645	1421	49	5		5	PRMT5	14	23397456	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1934175	23397456	83952084	1439	138430											
PRMT5	10419	broad.mit.edu	37	chr14	23398556	23398556	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaccagcacccccgacCgccatcgccgccatctttct	5	23	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23398556	A	A	23398556	2	1	168	1	0	0	0	0	0	0	0	1	12645	639	23	1		1	PRMT5	14	23398556	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1100	23398556	83950984	1440	138431											
KHNYN	23351	broad.mit.edu	37	chr14	24901200	24901200	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatctatgggacccggagatTgcaggggagcaaggggagac	18	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24901200	A	A	24901200	3	1	168	1	0	0	0	0	1	0	0	0	8220	1812	63	5	739	5	KHNYN	14	24901200	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1502644	24901200	82448340	1441	138432											
NOVA1	4857	broad.mit.edu	37	chr14	26949200	26949200	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacttgtttgatgcgatctgGattaacggtggtctggggtt	14	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26949200	C	C	26949200	3	2	168	1	0	0	0	0	1	0	0	0	10649	1174	41	4	1136	4	NOVA1	14	26949200	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2048000	26949200	80400340	1442	138433											
KIAA0391	9692	broad.mit.edu	37	chr14	35628258	35628258	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatccacagaagaaccacGgtgctgctgttgacgctcct	10	12	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35628258	A	A	35628258	1	1	168	0	1	0	0	0	0	0	0	0	8242	1131	39	4		4	KIAA0391	14	35628258	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	8679058	35628258	71721282	1443	138434											
PSMA6	5687	broad.mit.edu	37	chr14	35778168	35778168	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcacttattcaagataactGaaaacattggttgtgtgatg	8	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35778168	C	C	35778168	3	2	168	1	0	0	0	0	1	0	0	0	12777	1291	45	4	230	4	PSMA6	14	35778168	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	149910	35778168	71571372	1444	138435			1	108		3	3	106	G		2.190352e-05
PSMA6	5687	broad.mit.edu	37	chr14	35778193	35778193	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cattggttgtgtgatgaccgGaatgacaggtaattaatctg	12	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35778193	C	C	35778193	3	2	168	1	0	0	0	0	1	0	0	0	12777	1174	41	4	255	4	PSMA6	14	35778193	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	25	35778193	71571347	1445	138436			1	108		3	3	106	G		2.190352e-05
PSMA6	5687	broad.mit.edu	37	chr14	35778273	35778273	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattttcttcaaattattttGagttttgtattaattttaaa	3	2	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35778273	C	C	35778273	1	2	168	0	1	0	0	0	0	0	0	0	12777	1305	45	4		4	PSMA6	14	35778273	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	80	35778273	71571267	1446	138437			1	108		3	3	106	G		2.190352e-05
C14orf106	55320	broad.mit.edu	37	chr14	45712152	45712152	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaaacagcttttaaaattCttgaaataaagacacttaga	4	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45712152	G	G	45712152	1	3	168	0	1	0	0	0	0	0	0	0	1751	928	32	4		4	C14orf106	14	45712152	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	9933879	45712152	61637388	1447	138438											
MDGA2	161357	broad.mit.edu	37	chr14	47504309	47504309	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acattcctgacatttccctaGatacattcacaatcctcagt	3	13	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47504309	T	T	47504309	3	4	168	1	0	0	0	0	1	0	0	0	9500	942	33	3	1393	3	MDGA2	14	47504309	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1792157	47504309	59845231	1448	138439											
CDKL1	8814	broad.mit.edu	37	chr14	50845235	50845235	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgacaaggacacctgcagaCagttcttttttaaattttac	6	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50845235	G	G	50845235	1	3	168	0	1	0	0	0	0	0	0	0	3183	493	17	4		4	CDKL1	14	50845235	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3340926	50845235	56504305	1449	138440											
NID2	22795	broad.mit.edu	37	chr14	52534918	52534918	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaaaaaggtgacagtcgctCaagcccaaggacgctaccct	9	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52534918	G	G	52534918	1	3	168	0	1	0	0	0	0	0	0	0	10510	841	29	4		4	NID2	14	52534918	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1689683	52534918	54814622	1450	138441											
ERO1L	30001	broad.mit.edu	37	chr14	53119806	53119806	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgatttcatgaagtatttCcagaagtaacattttgtttt	6	5	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53119806	A	A	53119806	4	1	168	1	0	0	0	0	0	1	0	0	5281	864	30	3	390	3	ERO1L	14	53119806	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	584888	53119806	54229734	1451	138442											
GCH1	2643	broad.mit.edu	37	chr14	55309739	55309739	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgtcagttcattctgtgctCgttcaggtgcgtggaagcta	12	10	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55309739	A	A	55309739	1	1	168	0	1	0	0	0	0	0	0	0	6353	899	31	3		3	GCH1	14	55309739	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	2189933	55309739	52039801	1452	138443											
PELI2	57161	broad.mit.edu	37	chr14	56757004	56757004	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaaggcagcaaagtggAaaaaccccgacggccacatg	12	10	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56757004	G	G	56757004	3	3	168	1	0	0	0	0	1	0	0	0	11816	247	9	5	544	5	PELI2	14	56757004	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1447265	56757004	50592536	1453	138444											
ARID4A	5926	broad.mit.edu	37	chr14	58772654	58772654	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcataagtatggtgtttatTtttcttagctagattatata	6	3	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58772654	G	G	58772654	1	3	168	0	1	0	0	0	0	0	0	0	921	1856	64	5		5	ARID4A	14	58772654	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	2015650	58772654	48576886	1454	138445											
RTN1	6252	broad.mit.edu	37	chr14	60193858	60193858	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaacccggctcggccaggCcccgccggcttggcgcacgc	15	18	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60193858	T	T	60193858	3	4	168	1	0	0	0	0	1	0	0	0	13836	739	26	4	879	4	RTN1	14	60193858	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1421204	60193858	47155682	1455	138446											
KCNH5	27133	broad.mit.edu	37	chr14	63416960	63416960	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtaaagtagagagaggaCacgtacaatgaatccttgct	11	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63416960	G	G	63416960	2	3	168	1	0	0	0	0	0	0	0	1	8105	465	17	4		4	KCNH5	14	63416960	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3223102	63416960	43932580	1456	138447											
RHOJ	57381	broad.mit.edu	37	chr14	63671695	63671695	+	Frame_Shift_Del	DEL	C	-	-													ggtgccgtggggaaaacctgCctgctgatgagctacgccaa							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63671695	-	-	63671695	7	5	168	1	0	1	0	1	0	0	0	0	13450	747	26	0	110	0	RHOJ	14	63671695	Frame_Shift_Del	DEL	C	TCGA-50-6590-01A-12D-1855-08	254735	63671695	43677845	1457	138448											
PPP2R5E	5529	broad.mit.edu	37	chr14	63888614	63888614	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccattagtgtactctaatttGatttcttggtgaataaagcc	7	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63888614	A	A	63888614	1	1	168	0	1	0	0	0	0	0	0	0	12497	1305	45	4		4	PPP2R5E	14	63888614	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	216919	63888614	43460926	1458	138449											
RAD51L1	5890	broad.mit.edu	37	chr14	68888881	68888881	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaagggctcgctgtcgacGgcaaattcaaagaacatggt	11	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68888881	C	C	68888881	1	2	168	0	1	0	0	0	0	0	0	0	13097	1131	39	4		4	RAD51L1	14	68888881	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	5000267	68888881	38460659	1459	138450											
SFRS5	6430	broad.mit.edu	37	chr14	70238119	70238119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctaagtctccagcatctGtggatcgccagaggtcccgg	12	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70238119	T	T	70238119	3	4	168	1	0	0	0	0	1	0	0	0	14293	1377	48	3	786	3	SFRS5	14	70238119	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1349238	70238119	37111421	1460	138451											
SMOC1	64093	broad.mit.edu	37	chr14	70418870	70418870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagtttctaataagtgacCgtgacccacagtgcaacctc	7	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70418870	A	A	70418870	3	1	168	1	0	0	0	0	1	0	0	0	14915	652	23	1	121	1	SMOC1	14	70418870	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	180751	70418870	36930670	1461	138452											
SMOC1	64093	broad.mit.edu	37	chr14	70461123	70461123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcacccctagaaatcaCagccccaactctatggatta	4	15	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70461123	A	A	70461123	3	1	168	1	0	0	0	0	1	0	0	0	14915	478	17	3	616	3	SMOC1	14	70461123	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	42253	70461123	36888417	1462	138453											
MAP3K9	4293	broad.mit.edu	37	chr14	71209277	71209277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgctgcagtgcagccCgcgtcagctcctcctcccag	9	18	3	0	rs148357774		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71209277	A	A	71209277	3	1	168	1	0	0	0	0	1	0	0	0	9349	652	23	1	2030	1	MAP3K9	14	71209277	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	748154	71209277	36140263	1463	138454											
SIPA1L1	26037	broad.mit.edu	37	chr14	72196974	72196974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctccccaagtcgctccCgttgaggaggccttcttaca	8	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72196974	A	A	72196974	3	1	168	1	0	0	0	0	1	0	0	0	14442	652	23	1	4946	1	SIPA1L1	14	72196974	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	987697	72196974	35152566	1464	138455											
RGS6	9628	broad.mit.edu	37	chr14	73002750	73002750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggggtgtggggatggaaCatgttgcaagtttttctagg	17	3	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73002750	A	A	73002750	1	1	168	0	1	0	0	0	0	0	0	0	13418	493	17	3		3	RGS6	14	73002750	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	805776	73002750	34346790	1465	138456											
RBM25	58517	broad.mit.edu	37	chr14	73569704	73569704	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagattcctggtctgtgtaGagtatatggttttgcacgaa	13	5	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73569704	C	C	73569704	1	2	168	0	1	0	0	0	0	0	0	0	13233	957	33	4		4	RBM25	14	73569704	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	566954	73569704	33779836	1466	138457											
FAM161B	145483	broad.mit.edu	37	chr14	74411034	74411034	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtggcaaggatgtctTtaccctggagtttatcccca	11	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74411034	A	A	74411034	1	1	168	0	1	0	0	0	0	0	0	0	5519	1856	64	5		5	FAM161B	14	74411034	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	841330	74411034	32938506	1467	138458											
KIAA0317	9870	broad.mit.edu	37	chr14	75150054	75150054	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatttaatccaccaagcttCactgtgatttcataacgccc	4	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75150054	T	T	75150054	2	4	168	1	0	0	0	0	0	0	0	1	8237	813	29	4		4	KIAA0317	14	75150054	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	739020	75150054	32199486	1468	138459											
NEK9	91754	broad.mit.edu	37	chr14	75580004	75580004	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcctctaaaagtcaactatCtcagaaaagacaatggagtg	8	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75580004	A	A	75580004	1	1	168	0	1	0	0	0	0	0	0	0	10426	928	32	3		3	NEK9	14	75580004	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	429950	75580004	31769536	1469	138460											
TTLL5	23093	broad.mit.edu	37	chr14	76259372	76259372	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtatggttacagctgaacttCagcggctagctgagaagcag	13	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76259372	T	T	76259372	4	4	168	1	0	0	0	0	0	1	0	0	16856	827	29	4	3202	4	TTLL5	14	76259372	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	679368	76259372	31090168	1470	138461											
NGB	58157	broad.mit.edu	37	chr14	77732878	77732878	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgccgggcggggtcgcctCttactcgccatcccagcctc	12	18	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77732878	G	G	77732878	1	3	168	0	1	0	0	0	0	0	0	0	10487	928	32	4		4	NGB	14	77732878	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	1473506	77732878	29616662	1471	138462											
NRXN3	9369	broad.mit.edu	37	chr14	79176097	79176097	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taattttcacccttgcatgcTtgttgattcttttgctactc	5	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79176097	A	A	79176097	1	1	168	0	1	0	0	0	0	0	0	0	10762	1624	56	5		5	NRXN3	14	79176097	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1443219	79176097	28173443	1472	138463											
GPR65	8477	broad.mit.edu	37	chr14	88477568	88477569	+	Missense_Mutation	DNP	GG	TT	TT													tttgaagttttttttcctaaGgacaagaagatttgcactca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	88477569	TT	TT	88477568	3	4	168	1	0	0	0	0	1	0	0	0	6771	1000	35	2	379	2	GPR65	14	88477568	Missense_Mutation	DNP	GG	TCGA-50-6590-01A-12D-1855-08	9301471	88477568	18871972	1473	138464											
KCNK10	54207	broad.mit.edu	37	chr14	88737097	88737097	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctgaatcactgcgacAgccttcagtcctgtccccct	6	18	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88737097	T	T	88737097	1	4	168	0	1	0	0	0	0	0	0	0	8129	188	7	5		5	KCNK10	14	88737097	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	259529	88737097	18612443	1474	138465											
PTPN21	11099	broad.mit.edu	37	chr14	88970868	88970868	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacacagtggtaagtatgTgacaattcaccccaatttct	6	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88970868	C	C	88970868	1	2	168	0	1	0	0	0	0	0	0	0	12894	1711	59	5		5	PTPN21	14	88970868	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	233771	88970868	18378672	1475	138466											
TTC8	123016	broad.mit.edu	37	chr14	89310242	89310242	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttattgtaatttttctgacTttggaagtttagattctgaa	7	3	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89310242	C	C	89310242	1	2	168	0	1	0	0	0	0	0	0	0	16840	1624	56	5		5	TTC8	14	89310242	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	339374	89310242	18039298	1476	138467											
LGMN	5641	broad.mit.edu	37	chr14	93183807	93183807	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattcctggagtgggattgCtgaaaattaaaggacacaat	10	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93183807	A	A	93183807	5	1	168	1	0	0	0	0	0	0	1	0	8827	811	28	3	1109	3	LGMN	14	93183807	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	3873565	93183807	14165733	1477	138468											
BTBD7	55727	broad.mit.edu	37	chr14	93761036	93761036	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagagaaagctcctttaaTgctgatgttccctcatattc	7	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93761036	C	C	93761036	2	2	168	1	0	0	0	0	0	0	0	1	1556	1451	51	5		5	BTBD7	14	93761036	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	577229	93761036	13588504	1478	138469											
KIAA1409	57578	broad.mit.edu	37	chr14	94044364	94044364	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattgtgaagatgatgaaatGaatctaaattgtttcatcct	8	4	2	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94044364	A	A	94044364	3	1	168	1	0	0	0	0	1	0	0	0	8300	1290	45	4	1915	4	KIAA1409	14	94044364	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	283328	94044364	13305176	1479	138470											
KIAA1409	57578	broad.mit.edu	37	chr14	94084637	94084637	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcatagctgcaagccccatGccacggcaggacctttgtac	9	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94084637	C	C	94084637	3	2	168	1	0	0	0	0	1	0	0	0	8300	1319	46	4	3895	4	KIAA1409	14	94084637	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	40273	94084637	13264903	1480	138471											
FAM181A	90050	broad.mit.edu	37	chr14	94395260	94395261	+	Missense_Mutation	DNP	CC	AA	AA													cttggtgggccgcgtcaatgCctggagttgctgccccttcc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	94395261	AA	AA	94395260	3	1	168	1	0	0	0	0	1	0	0	0	5554	739	26	3	821	3	FAM181A	14	94395260	Missense_Mutation	DNP	CC	TCGA-50-6590-01A-12D-1855-08	310623	94395260	12954280	1481	138472											
PPP4R4	57718	broad.mit.edu	37	chr14	94703803	94703803	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagtatctttatgatttttCatattttctgcagcaactag	5	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94703803	G	G	94703803	1	3	168	0	1	0	0	0	0	0	0	0	12506	841	29	4		4	PPP4R4	14	94703803	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	308543	94703803	12645737	1482	138473											
PPP4R4	57718	broad.mit.edu	37	chr14	94731173	94731173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaattttctagacctaCttcagttgtacctttaatgc	5	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94731173	A	A	94731173	1	1	168	0	1	0	0	0	0	0	0	0	12506	580	20	3		3	PPP4R4	14	94731173	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	27370	94731173	12618367	1483	138474											
PPP4R4	57718	broad.mit.edu	37	chr14	94731755	94731755	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacaccaacgcaaagtctGcccaagaacatccccatttc	5	15	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731755	T	T	94731755	2	4	168	1	0	0	0	0	0	0	0	1	12506	1306	46	3		3	PPP4R4	14	94731755	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	582	94731755	12617785	1484	138475											
SERPINA11	256394	broad.mit.edu	37	chr14	94908973	94908973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggttgacaacttttccCaggaagagtaagctctgggt	12	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94908973	A	A	94908973	2	1	168	1	0	0	0	0	0	0	0	1	14201	581	21	2		2	SERPINA11	14	94908973	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	177218	94908973	12440567	1485	138476											
ATG2B	55102	broad.mit.edu	37	chr14	96755865	96755865	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatatgggcacatgttatTagtggcagttgccattctgc	11	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96755865	A	A	96755865	1	1	168	0	1	0	0	0	0	0	0	0	1098	1769	61	5		5	ATG2B	14	96755865	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1846892	96755865	10593675	1486	138477											
AK7	122481	broad.mit.edu	37	chr14	96949366	96949366	+	Missense_Mutation	SNP	G	A	A													acttgaagatgctcagaataGacttgctatcaaacagctca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96949366	A	A	96949366	3	1	168	1	0	0	0	0	1	0	0	0	444	942	33	4	1846	4	AK7	14	96949366	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	193501	96949366	10400174	1487	138478	595	2									
AK7	122481	broad.mit.edu	37	chr14	96949376	96949376	+	Missense_Mutation	SNP	C	G	G													gctcagaatagacttgctatCaaacagctcatcaaagagat							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96949376	G	G	96949376	3	3	168	1	0	0	0	0	1	0	0	0	444	816	29	4	1856	4	AK7	14	96949376	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	10	96949376	10400164	1488	138479	595	2									
VRK1	7443	broad.mit.edu	37	chr14	97319406	97319406	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttattctgtatgatactttCatagctggatattctggaat	7	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97319406	A	A	97319406	1	1	168	0	1	0	0	0	0	0	0	0	17346	841	29	3		3	VRK1	14	97319406	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	370030	97319406	10030134	1489	138480											
C14orf177	283598	broad.mit.edu	37	chr14	99183594	99183594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaaaggaactgtagaaCagatgtcacagatgtaacta	9	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99183594	A	A	99183594	3	1	168	1	0	0	0	0	1	0	0	0	1773	479	17	3	367	3	C14orf177	14	99183594	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1864188	99183594	8165946	1490	138481											
EVL	51466	broad.mit.edu	37	chr14	100598998	100598998	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggtggaggcagaagagttCtgggacagtgagagaacgtg	19	4	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100598998	G	G	100598998	1	3	168	0	1	0	0	0	0	0	0	0	5333	928	32	4		4	EVL	14	100598998	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1415404	100598998	6750542	1491	138482											
C14orf68	283600	broad.mit.edu	37	chr14	100795348	100795348	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcctacgcggtcctctgcGagtggctcagccccgctggc	12	16	2	0	rs147730585		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100795348	T	T	100795348	4	4	168	1	0	0	0	0	0	1	0	0	1791	1059	37	3	631	3	C14orf68	14	100795348	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	196350	100795348	6554192	1492	138483											
ZNF839	55778	broad.mit.edu	37	chr14	102808406	102808406	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacagaagcagatttttattCagacttccgatgggcttatc	9	8	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102808406	A	A	102808406	3	1	168	1	0	0	0	0	1	0	0	0	18317	827	29	3	2704	3	ZNF839	14	102808406	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2013058	102808406	4541134	1493	138484											
RCOR1	23186	broad.mit.edu	37	chr14	103128621	103128621	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacatccaaagcatcataatCaggagctagttgaacgtatg	8	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103128621	T	T	103128621	1	4	168	0	1	0	0	0	0	0	0	0	13290	841	29	4		4	RCOR1	14	103128621	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	320215	103128621	4220919	1494	138485											
CDC42BPB	9578	broad.mit.edu	37	chr14	103425913	103425913	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaaatcatatatgacacTatttctaacttatcataaac	3	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103425913	C	C	103425913	1	2	168	0	1	0	0	0	0	0	0	0	3103	1537	53	5		5	CDC42BPB	14	103425913	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	297292	103425913	3923627	1495	138486											
AHNAK2	113146	broad.mit.edu	37	chr14	105415110	105415110	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggccgacttcctcgggCacagggccctccaggagttt	13	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105415110	A	A	105415110	2	1	168	1	0	0	0	0	0	0	0	1	415	697	25	3		3	AHNAK2	14	105415110	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1989197	105415110	1934430	1496	138487											
TUBGCP5	114791	broad.mit.edu	37	chr15	22842198	22842198	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaaggtattatgtgttatGaggtgctcgcattttctaat	11	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22842198	C	C	22842198	1	2	168	0	1	0	0	0	0	0	0	0	16895	1305	45	4		4	TUBGCP5	15	22842198	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08		22842198	79689194	1497	138488											
MAGEL2	54551	broad.mit.edu	37	chr15	23889815	23889815	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaggaactgcaccaacgcAtttgccctctcatccaaggg	9	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23889815	T	T	23889815	3	4	168	1	0	0	0	0	1	0	0	0	9281	214	8	5	678	5	MAGEL2	15	23889815	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1047617	23889815	78641577	1498	138489											
MAGEL2	54551	broad.mit.edu	37	chr15	23890520	23890520	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaactgggaggtagctggGaagacacttgaggagggagc	18	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23890520	A	A	23890520	2	1	168	1	0	0	0	0	0	0	0	1	9281	1165	41	4		4	MAGEL2	15	23890520	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	705	23890520	78640872	1499	138490											
GABRB3	2562	broad.mit.edu	37	chr15	26812859	26812859	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttcaaccgaaagctcAgtgacagtcgaggataggca	10	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26812859	T	T	26812859	3	4	168	1	0	0	0	0	1	0	0	0	6228	188	7	5	729	5	GABRB3	15	26812859	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2922339	26812859	75718533	1500	138491											
HERC2	8924	broad.mit.edu	37	chr15	28441571	28441571	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcaacagaaaaccattcgtCccaaagcaaatctagcaacc	4	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28441571	A	A	28441571	1	1	168	0	1	0	0	0	0	0	0	0	7125	870	30	3		3	HERC2	15	28441571	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1628712	28441571	74089821	1501	138492											
HERC2	8924	broad.mit.edu	37	chr15	28478365	28478365	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaagaacttaacaatttAaacttagacattatagagag	7	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28478365	G	G	28478365	2	3	168	1	0	0	0	0	0	0	0	1	7125	359	13	5		5	HERC2	15	28478365	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	36794	28478365	74053027	1502	138493											
APBA2	321	broad.mit.edu	37	chr15	29386539	29386539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagggccttgaggccctGggacagtgttgtttgcttgt	16	7	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29386539	T	T	29386539	1	4	168	0	1	0	0	0	0	0	0	0	759	1363	47	2		2	APBA2	15	29386539	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	908174	29386539	73144853	1503	138494											
RYR3	6263	broad.mit.edu	37	chr15	33926713	33926713	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagccaggactgttgctggGaatatgtgaatagggtgagc	15	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33926713	T	T	33926713	1	4	168	0	1	0	0	0	0	0	0	0	13881	1189	41	3		3	RYR3	15	33926713	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4540174	33926713	68604679	1504	138495											
RYR3	6263	broad.mit.edu	37	chr15	34130391	34130391	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaagcgacagttcattttTgatgttgtcaatgaaggtgg	11	5	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34130391	C	C	34130391	2	2	168	1	0	0	0	0	0	0	0	1	13881	1809	63	5		5	RYR3	15	34130391	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	203678	34130391	68401001	1505	138496											
CHRM5	1133	broad.mit.edu	37	chr15	34354914	34354914	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttactgtaaaatttttgcaCcaggatggaaggggattctt	10	5	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34354914	T	T	34354914	1	4	168	0	1	0	0	0	0	0	0	0	3411	522	18	4		4	CHRM5	15	34354914	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	224523	34354914	68176478	1506	138497											
EXD1	161829	broad.mit.edu	37	chr15	41487996	41487996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcaaagacattattcaGcaaaattccatactgatgag	7	7	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41487996	T	T	41487996	3	4	168	1	0	0	0	0	1	0	0	0	5339	962	34	3	1037	3	EXD1	15	41487996	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	7133082	41487996	61043396	1507	138498											
TYRO3	7301	broad.mit.edu	37	chr15	41857324	41857324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggccgagctctgctacaGtcctgtacagttcaggtagg	13	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41857324	T	T	41857324	3	4	168	1	0	0	0	0	1	0	0	0	16940	1020	36	3	790	3	TYRO3	15	41857324	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	369328	41857324	60674068	1508	138499											
UBR1	197131	broad.mit.edu	37	chr15	43252861	43252861	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgaccacggtgttttttTgcttcaaacagtttagtaag	8	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43252861	A	A	43252861	3	1	168	1	0	0	0	0	1	0	0	0	17027	1812	63	5	530	5	UBR1	15	43252861	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1395537	43252861	59278531	1509	138500											
SEMA6D	80031	broad.mit.edu	37	chr15	48060921	48060921	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaacacttctgattttactGatcctttatcgggtatccca	5	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48060921	C	C	48060921	3	2	168	1	0	0	0	0	1	0	0	0	14155	1290	45	4	2018	4	SEMA6D	15	48060921	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4808060	48060921	54470471	1510	138501											
SLC12A1	6557	broad.mit.edu	37	chr15	48577341	48577341	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacaggagagactagcattgGaagcgactatcaaagataat	10	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48577341	A	A	48577341	3	1	168	1	0	0	0	0	1	0	0	0	14495	1175	41	4	2702	4	SLC12A1	15	48577341	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	516420	48577341	53954051	1511	138502											
FBN1	2200	broad.mit.edu	37	chr15	48787277	48787277	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcccctttttatgcaaagAccattggagtggtataggaa	9	8	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48787277	T	T	48787277	1	4	168	0	1	0	0	0	0	0	0	0	5759	290	10	5		5	FBN1	15	48787277	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	209936	48787277	53744115	1512	138503											
CEP152	22995	broad.mit.edu	37	chr15	49044714	49044714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttagtaaaaatctttataCaattttatatttaaaatgct	3	4	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49044714	T	T	49044714	1	4	168	0	1	0	0	0	0	0	0	0	3278	493	17	4		4	CEP152	15	49044714	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	257437	49044714	53486678	1513	138504											
ATP8B4	79895	broad.mit.edu	37	chr15	50190202	50190202	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatctagtgattatatattgCcaaatgctgaaactgaggac	8	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50190202	G	G	50190202	1	3	168	0	1	0	0	0	0	0	0	0	1201	754	26	4		4	ATP8B4	15	50190202	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1145488	50190202	52341190	1514	138505											
SLC27A2	11001	broad.mit.edu	37	chr15	50521115	50521115	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagaaaccaccagtgacCtctgctaactttgtcctttc	7	14	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50521115	T	T	50521115	1	4	168	0	1	0	0	0	0	0	0	0	14640	696	24	4		4	SLC27A2	15	50521115	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	330913	50521115	52010277	1515	138506											
ALDH1A2	8854	broad.mit.edu	37	chr15	58247299	58247299	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatctttaagtaaggacCgtggctcaactttgtattcc	7	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58247299	A	A	58247299	1	1	168	0	1	0	0	0	0	0	0	0	491	667	23	1		1	ALDH1A2	15	58247299	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	7726184	58247299	44284093	1516	138507											
VPS13C	54832	broad.mit.edu	37	chr15	62223233	62223233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctagcaatgcctggcagcCatgcaggtgcaatgtcaacc	11	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62223233	A	A	62223233	1	1	168	0	1	0	0	0	0	0	0	0	17318	609	21	2		2	VPS13C	15	62223233	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3975934	62223233	40308159	1517	138508											
TLN2	83660	broad.mit.edu	37	chr15	63044382	63044382	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctttttaatccaaataaagGagaaaatgtcaaatgttcca	5	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63044382	T	T	63044382	1	4	168	0	1	0	0	0	0	0	0	0	16071	1189	41	3		3	TLN2	15	63044382	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	821149	63044382	39487010	1518	138509											
TLN2	83660	broad.mit.edu	37	chr15	63102154	63102154	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaccccgatgtcagtgacGaggtgagaaccagagccttg	12	12	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63102154	T	T	63102154	4	4	168	1	0	0	0	0	0	1	0	0	16071	1059	37	3	6888	3	TLN2	15	63102154	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	57772	63102154	39429238	1519	138510											
ITGA11	22801	broad.mit.edu	37	chr15	68620471	68620471	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatggggtgccaggaagatGggcgtgaagcagaggaaggc	19	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68620471	A	A	68620471	2	1	168	1	0	0	0	0	0	0	0	1	7944	1335	47	4		4	ITGA11	15	68620471	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	5518317	68620471	33910921	1520	138511											
GOLGA6B	55889	broad.mit.edu	37	chr15	72954823	72954823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgcgggagcaggagagaCtgtgtgaacaaaacgagagg	18	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72954823	A	A	72954823	3	1	168	1	0	0	0	0	1	0	0	0	6622	564	20	3	1120	3	GOLGA6B	15	72954823	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4334352	72954823	29576569	1521	138512											
ADPGK	83440	broad.mit.edu	37	chr15	73047867	73047867	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcaaggctctatgaggatCagggccaaacgatggtccca	12	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73047867	A	A	73047867	1	1	168	0	1	0	0	0	0	0	0	0	330	841	29	3		3	ADPGK	15	73047867	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	93044	73047867	29483525	1522	138513											
ISLR	3671	broad.mit.edu	37	chr15	74467295	74467295	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggaaaagtatggcttccaGatcgccgactgtgcctaccg	13	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74467295	C	C	74467295	3	2	168	1	0	0	0	0	1	0	0	0	7928	933	33	4	98	4	ISLR	15	74467295	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1419428	74467295	28064097	1523	138514											
STRA6	64220	broad.mit.edu	37	chr15	74473108	74473108	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctctattcccccattcccAgtgggagggcgcaccttcgt	11	15	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74473108	T	T	74473108	1	4	168	0	1	0	0	0	0	0	0	0	15440	203	7	5		5	STRA6	15	74473108	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	5813	74473108	28058284	1524	138515											
UBL7	84993	broad.mit.edu	37	chr15	74743668	74743668	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactctccctcttcccacaaGaccagtcattcttcaaaaga	3	15	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74743668	C	C	74743668	1	2	168	0	1	0	0	0	0	0	0	0	17016	957	33	4		4	UBL7	15	74743668	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	270560	74743668	27787724	1525	138516											
LMAN1L	79748	broad.mit.edu	37	chr15	75111699	75111699	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctaaagagcactggggtgGcgtcagccacttcaccacat	10	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75111699	C	C	75111699	1	2	168	0	1	0	0	0	0	0	0	0	8911	1218	42	4		4	LMAN1L	15	75111699	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	368031	75111699	27419693	1526	138517											
AKAP13	11214	broad.mit.edu	37	chr15	86284145	86284145	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagcatttttatgagacgGgcttgaaaaatgaggggaga	15	3	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86284145	C	C	86284145	1	2	168	0	1	0	0	0	0	0	0	0	449	1247	43	4		4	AKAP13	15	86284145	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	11172446	86284145	16247247	1527	138518											
C15orf42	90381	broad.mit.edu	37	chr15	90167030	90167030	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaagactcctcctcaccCggccatgactcaccattgga	6	15	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90167030	A	A	90167030	2	1	168	1	0	0	0	0	0	0	0	1	1809	639	23	1		1	C15orf42	15	90167030	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	3882885	90167030	12364362	1528	138519											
KIF7	374654	broad.mit.edu	37	chr15	90190167	90190168	+	Missense_Mutation	DNP	GG	TT	TT													ggggggctgtatgaggtcgaGgcacaaaggacccgggaggc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	90190168	TT	TT	90190167	3	4	168	1	0	0	0	0	1	0	0	0	8379	1000	35	2	2401	2	KIF7	15	90190167	Missense_Mutation	DNP	GG	TCGA-50-6590-01A-12D-1855-08	23137	90190167	12341225	1529	138520											
CRTC3	64784	broad.mit.edu	37	chr15	91168876	91168876	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccagtgttctcagaatcaGagaggccgcaccaggacctc	10	14	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91168876	C	C	91168876	1	2	168	0	1	0	0	0	0	0	0	0	3933	957	33	4		4	CRTC3	15	91168876	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	978709	91168876	11362516	1530	138521											
LRRC28	123355	broad.mit.edu	37	chr15	99825120	99825120	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaacccatcatgactgctGaagtttcctccacgaccaaa	5	15	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99825120	T	T	99825120	1	4	168	0	1	0	0	0	0	0	0	0	9069	1305	45	3		3	LRRC28	15	99825120	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	8656244	99825120	2706272	1531	138522											
ADAMTS17	170691	broad.mit.edu	37	chr15	100695480	100695480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgacatgatgtgggaCctgccagcgcaagatgagtg	13	10	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100695480	A	A	100695480	3	1	168	1	0	0	0	0	1	0	0	0	262	506	18	3	2116	3	ADAMTS17	15	100695480	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	870360	100695480	1835912	1532	138523											
TM2D3	80213	broad.mit.edu	37	chr15	102190128	102190128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcttcagaatttcttccCaataatcaagtctgaattgt	4	8	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102190128	A	A	102190128	1	1	168	0	1	0	0	0	0	0	0	0	16088	609	21	2		2	TM2D3	15	102190128	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1494648	102190128	341264	1533	138524											
BAIAP3	8938	broad.mit.edu	37	chr16	1388884	1388884	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtgctgagagctgtgagctGacccggctctttctccagga	13	12	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1388884	C	C	1388884	1	2	168	0	1	0	0	0	0	0	0	0	1309	1305	45	4		4	BAIAP3	16	1388884	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08		1388884	88965869	1534	138525											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1817877	1817877	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggcagccggctctgggtgGgcaccggcaacggagtggtc	19	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1817877	C	C	1817877	3	2	168	1	0	0	0	0	1	0	0	0	9378	1232	43	4	3604	4	MAPK8IP3	16	1817877	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	428993	1817877	88536876	1535	138526											
OR1F1	4992	broad.mit.edu	37	chr16	3254739	3254739	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcacaccctgctgatggctCcactctcattctgtgcagac	8	15	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3254739	G	G	3254739	3	3	168	1	0	0	0	0	1	0	0	0	11050	855	30	4	495	4	OR1F1	16	3254739	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1436862	3254739	87100014	1536	138527											
TIGD7	91151	broad.mit.edu	37	chr16	3350096	3350096	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttcatccccactgtatagCtgagctagacacagtttctc	7	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3350096	G	G	3350096	3	3	168	1	0	0	0	0	1	0	0	0	16024	796	28	4	1134	4	TIGD7	16	3350096	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	95357	3350096	87004657	1537	138528											
TIGD7	91151	broad.mit.edu	37	chr16	3350604	3350604	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagtgttgtatatttccctCtcttattcatactgaattta	4	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3350604	G	G	3350604	3	3	168	1	0	0	0	0	1	0	0	0	16024	913	32	4	1642	4	TIGD7	16	3350604	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	508	3350604	87004149	1538	138529											
NLRC3	197358	broad.mit.edu	37	chr16	3614852	3614852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtctgcctcccaagccGgtcctaccattgctgcaggg	11	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3614852	T	T	3614852	1	4	168	0	1	0	0	0	0	0	0	0	10563	1131	39	1		1	NLRC3	16	3614852	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	264248	3614852	86739901	1539	138530											
PPL	5493	broad.mit.edu	37	chr16	4960772	4960772	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccctgggtgagaatcacCgattccaaacagatcctggt	9	13	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4960772	T	T	4960772	1	4	168	0	1	0	0	0	0	0	0	0	12435	667	23	4		4	PPL	16	4960772	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1345920	4960772	85393981	1540	138531											
A2BP1	54715	broad.mit.edu	37	chr16	7629967	7629967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcccgctctgggggttcCagagacctccctgtctcatg	12	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7629967	A	A	7629967	1	1	168	0	1	0	0	0	0	0	0	0	3	609	21	2		2	A2BP1	16	7629967	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2669195	7629967	82724786	1541	138532											
PMM2	5373	broad.mit.edu	37	chr16	8906833	8906833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgcctttgtgtgccccGtccccacccggcaggaggcc	11	17	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8906833	T	T	8906833	1	4	168	0	1	0	0	0	0	0	0	0	12232	1160	40	3		3	PMM2	16	8906833	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1276866	8906833	81447920	1542	138533											
USP7	7874	broad.mit.edu	37	chr16	8995999	8995999	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctcgggatcaactgtttCcaggaatattgtccaagggt	11	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8995999	T	T	8995999	3	4	168	1	0	0	0	0	1	0	0	0	17215	864	30	4	1377	4	USP7	16	8995999	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	89166	8995999	81358754	1543	138534											
GRIN2A	2903	broad.mit.edu	37	chr16	9858499	9858499	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttatccttctgccggttggCcacaaatgtttggagttcgt	11	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9858499	G	G	9858499	3	3	168	1	0	0	0	0	1	0	0	0	6845	739	26	4	1496	4	GRIN2A	16	9858499	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	862500	9858499	80496254	1544	138535											
PDXDC1	23042	broad.mit.edu	37	chr16	15128365	15128365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgtgctgaattggttttctCcggtccaggctttacagaag	11	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15128365	A	A	15128365	3	1	168	1	0	0	0	0	1	0	0	0	11790	855	30	3	2039	3	PDXDC1	16	15128365	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	5269866	15128365	75226388	1545	138536											
ABCC1	4363	broad.mit.edu	37	chr16	16150007	16150007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaacgaaattctcaatgGgatcaaagtgctaaagcttt	9	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16150007	T	T	16150007	3	4	168	1	0	0	0	0	1	0	0	0	49	1232	43	2	1578	2	ABCC1	16	16150007	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1021642	16150007	74204746	1546	138537											
ACSM2B	348158	broad.mit.edu	37	chr16	20552030	20552030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacatgctgctgcagctcCttggtgagctgttctgggtc	12	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20552030	A	A	20552030	3	1	168	1	0	0	0	0	1	0	0	0	184	680	24	2	166	2	ACSM2B	16	20552030	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4402023	20552030	69802723	1547	138538											
ACSM1	116285	broad.mit.edu	37	chr16	20635556	20635556	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcagaatgaagtcatgGgctcacagtgagtgccaacc	11	11	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20635556	T	T	20635556	1	4	168	0	1	0	0	0	0	0	0	0	182	1247	43	2		2	ACSM1	16	20635556	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	83526	20635556	69719197	1548	138539											
ZP2	7783	broad.mit.edu	37	chr16	21216719	21216719	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctgtgctttggtggtacAaagccagacttccacaccta	10	12	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21216719	G	G	21216719	1	3	168	0	1	0	0	0	0	0	0	0	18345	145	5	5		5	ZP2	16	21216719	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	581163	21216719	69138034	1549	138540											
ANKS4B	257629	broad.mit.edu	37	chr16	21261823	21261823	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggagcatcagaggctgaTgagggtgcagctgatgaaga	16	6	1	6			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21261823	C	C	21261823	2	2	168	1	0	0	0	0	0	0	0	1	691	1461	51	5		5	ANKS4B	16	21261823	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	45104	21261823	69092930	1550	138541											
EEF2K	29904	broad.mit.edu	37	chr16	22268994	22268994	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatggcgctcttcttctactCtcatgcctgcaaccggattt	8	13	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22268994	G	G	22268994	3	3	168	1	0	0	0	0	1	0	0	0	4970	913	32	4	962	4	EEF2K	16	22268994	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1007171	22268994	68085759	1551	138542											
SCNN1G	6340	broad.mit.edu	37	chr16	23203593	23203593	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtatctggcctggagtctCagtcactcattcttatggtc	10	10	5	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23203593	A	A	23203593	1	1	168	0	1	0	0	0	0	0	0	0	14043	841	29	3		3	SCNN1G	16	23203593	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	934599	23203593	67151160	1552	138543											
PRKCB	5579	broad.mit.edu	37	chr16	24135066	24135066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagggtgccggagctgcaGgaactacagcttcccattgt	13	11	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24135066	T	T	24135066	1	4	168	0	1	0	0	0	0	0	0	0	12614	1015	35	2		2	PRKCB	16	24135066	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	931473	24135066	66219687	1553	138544											
HS3ST4	9951	broad.mit.edu	37	chr16	26147016	26147016	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaaatgaggctcccaagcGcattcactccatggccaagg	10	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26147016	A	A	26147016	3	1	168	1	0	0	0	0	1	0	0	0	7434	1087	38	4	824	4	HS3ST4	16	26147016	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2011950	26147016	64207737	1554	138545											
EIF3CL	728689	broad.mit.edu	37	chr16	28426164	28426164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttcaatgcgaaggacgCgcaaatgcagcaagatggac	14	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28426164	A	A	28426164	1	1	168	0	1	0	0	0	0	0	0	0	5055	783	27	3		3	EIF3CL	16	28426164	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2279148	28426164	61928589	1555	138546											
SPN	6693	broad.mit.edu	37	chr16	29676149	29676149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaagtctgggtcaggccCcagcctcaaaggggaggagg	17	10	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29676149	A	A	29676149	3	1	168	1	0	0	0	0	1	0	0	0	15191	623	22	2	1102	2	SPN	16	29676149	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1249985	29676149	60678604	1556	138547											
C16orf54	283897	broad.mit.edu	37	chr16	29756144	29756144	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtggtgaggatgaagagCgcagccagggtggccaggac	20	8	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29756144	A	A	29756144	2	1	168	1	0	0	0	0	0	0	0	1	1833	755	27	3		3	C16orf54	16	29756144	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	79995	29756144	60598609	1557	138548											
HIRIP3	8479	broad.mit.edu	37	chr16	30005561	30005561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctctcccactgtcatccCcactgctggctgcctctttc	5	18	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30005561	A	A	30005561	3	1	168	1	0	0	0	0	1	0	0	0	7188	623	22	2	781	2	HIRIP3	16	30005561	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	249417	30005561	60349192	1558	138549											
INO80E	283899	broad.mit.edu	37	chr16	30012022	30012022	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtgtagaggaggttatacCtttctgggatggactgggat	15	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30012022	T	T	30012022	1	4	168	0	1	0	0	0	0	0	0	0	7820	696	24	4		4	INO80E	16	30012022	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	6461	30012022	60342731	1559	138550											
INO80E	283899	broad.mit.edu	37	chr16	30012182	30012182	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagatgcattcctctcGctggggagggtcaggtgggg	18	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30012182	C	C	30012182	1	2	168	0	1	0	0	0	0	0	0	0	7820	1102	38	4		4	INO80E	16	30012182	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	160	30012182	60342571	1560	138551											
ZNF768	79724	broad.mit.edu	37	chr16	30537224	30537224	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccccgggctttcaggctcAaatctggggctttggggttc	13	11	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30537224	C	C	30537224	3	2	168	1	0	0	0	0	1	0	0	0	18270	127	5	5	1389	5	ZNF768	16	30537224	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	525042	30537224	59817529	1561	138552											
SRCAP	10847	broad.mit.edu	37	chr16	30745918	30745918	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagactgtggccagcaagcaGactcatattctggagcaggt	13	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30745918	C	C	30745918	3	2	168	1	0	0	0	0	1	0	0	0	15253	933	33	4	6825	4	SRCAP	16	30745918	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	208694	30745918	59608835	1562	138553											
ITGAM	3684	broad.mit.edu	37	chr16	31341697	31341697	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttggcatccaggaagaattCaatgctaccctcaaaggcaa	8	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31341697	G	G	31341697	3	3	168	1	0	0	0	0	1	0	0	0	7957	825	29	4	3238	4	ITGAM	16	31341697	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	595779	31341697	59013056	1563	138554											
ITGAD	3681	broad.mit.edu	37	chr16	31409059	31409059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggaggaggctggggctGggagtgaaggaggaggggct	25	3	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31409059	T	T	31409059	1	4	168	0	1	0	0	0	0	0	0	0	7954	1363	47	2		2	ITGAD	16	31409059	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	67362	31409059	58945694	1564	138555											
ARMC5	79798	broad.mit.edu	37	chr16	31476282	31476282	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatggcttccatgggcccAgaacctcaccttcccactca	6	19	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31476282	G	G	31476282	1	3	168	0	1	0	0	0	0	0	0	0	958	175	7	5		5	ARMC5	16	31476282	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	67223	31476282	58878471	1565	138556											
MYLK3	91807	broad.mit.edu	37	chr16	46746759	46746759	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgctggggctcatttcTggtgggatgcagacattccc	15	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46746759	C	C	46746759	1	2	168	0	1	0	0	0	0	0	0	0	10152	1595	55	5		5	MYLK3	16	46746759	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	15270477	46746759	43607994	1566	138557											
ABCC12	94160	broad.mit.edu	37	chr16	48141258	48141258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccttgtccaaccagagaCccagccaccagttgctgaag	9	15	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48141258	A	A	48141258	3	1	168	1	0	0	0	0	1	0	0	0	52	507	18	3	1677	3	ABCC12	16	48141258	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1394499	48141258	42213495	1567	138558											
ABCC11	85320	broad.mit.edu	37	chr16	48201550	48201550	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccatgtcaatggaggctgTggcttcatcgataaggatga	12	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48201550	A	A	48201550	3	1	168	1	0	0	0	0	1	0	0	0	51	1696	59	5	243	5	ABCC11	16	48201550	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	60292	48201550	42153203	1568	138559											
ABCC11	85320	broad.mit.edu	37	chr16	48256525	48256525	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacctctcctgaggtgatgTgtattacagacttaaattgg	9	7	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48256525	C	C	48256525	3	2	168	1	0	0	0	0	1	0	0	0	51	1696	59	5	3487	5	ABCC11	16	48256525	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	54975	48256525	42098228	1569	138560											
LONP2	83752	broad.mit.edu	37	chr16	48290700	48290700	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctttgtcactttttattGagatctagatagtgagtagt	9	4	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48290700	C	C	48290700	1	2	168	0	1	0	0	0	0	0	0	0	8980	1305	45	4		4	LONP2	16	48290700	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	34175	48290700	42064053	1570	138561											
C16orf78	123970	broad.mit.edu	37	chr16	49430386	49430386	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccactcagcggccaaacccAttccgtcgacaaagcattgt	7	15	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49430386	G	G	49430386	2	3	168	1	0	0	0	0	0	0	0	1	1849	204	8	5		5	C16orf78	16	49430386	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	1139686	49430386	40924367	1571	138562											
ZNF423	23090	broad.mit.edu	37	chr16	49671243	49671243	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagacacctccacatcggacGagactgggctctgctcggcc	11	15	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49671243	T	T	49671243	4	4	168	1	0	0	0	0	0	1	0	0	18025	1059	37	3	2054	3	ZNF423	16	49671243	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	240857	49671243	40683510	1572	138563											
SALL1	6299	broad.mit.edu	37	chr16	51175915	51175915	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctggattttcatttacgAttaaaactaattgattttta	6	4	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51175915	T	T	51175915	3	4	168	1	0	0	0	0	1	0	0	0	13921	333	12	5	3764	5	SALL1	16	51175915	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1504672	51175915	39178838	1573	138564											
SALL1	6299	broad.mit.edu	37	chr16	51176097	51176097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggattagaaaaggggccaGgacacacagtcacctatgac	11	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51176097	T	T	51176097	1	4	168	0	1	0	0	0	0	0	0	0	13921	1015	35	2		2	SALL1	16	51176097	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	182	51176097	39178656	1574	138565											
LPCAT2	54947	broad.mit.edu	37	chr16	55543151	55543151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgccaggtgccggcgtcGggaacgtggggctgcggccg	20	12	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55543151	T	T	55543151	3	4	168	1	0	0	0	0	1	0	0	0	8998	1116	39	1	60	1	LPCAT2	16	55543151	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	4367054	55543151	34811602	1575	138566											
SLC12A3	6559	broad.mit.edu	37	chr16	56920913	56920913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagctcatcgccaacgggCacaccaagtggctgaacaag	10	14	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56920913	A	A	56920913	3	1	168	1	0	0	0	0	1	0	0	0	14497	710	25	3	2152	3	SLC12A3	16	56920913	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1377762	56920913	33433840	1576	138567											
CPNE2	221184	broad.mit.edu	37	chr16	57155139	57155139	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtactgtaaccccaagacctCagcagggctgggggaagggg	16	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57155139	T	T	57155139	1	4	168	0	1	0	0	0	0	0	0	0	3844	841	29	4		4	CPNE2	16	57155139	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	234226	57155139	33199614	1577	138568											
KIFC3	3801	broad.mit.edu	37	chr16	57805055	57805055	+	Intron	DEL	C	-	-													ccccttatgggctagccctgCcccaggtgccaggggccttg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57805055	-	-	57805055	6	5	168	0	1	1	0	1	0	0	0	0	8384	754	26	0		0	KIFC3	16	57805055	Intron	DEL	C	TCGA-50-6590-01A-12D-1855-08	649916	57805055	32549698	1578	138569											
SLC38A7	55238	broad.mit.edu	37	chr16	58712262	58712262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atatttctggaaaccaatctCcctggggatggagaggggca	13	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58712262	T	T	58712262	3	4	168	1	0	0	0	0	1	0	0	0	14723	864	30	4	834	4	SLC38A7	16	58712262	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	907207	58712262	31642491	1579	138570											
CDH8	1006	broad.mit.edu	37	chr16	61761058	61761058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggatgcgaattcaggggcGttgtcattgacatccagcac	12	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61761058	T	T	61761058	3	4	168	1	0	0	0	0	1	0	0	0	3146	1136	40	3	939	3	CDH8	16	61761058	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3048796	61761058	28593695	1580	138571											
CDH8	1006	broad.mit.edu	37	chr16	61859037	61859037	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggataacaaccaggtactcCtccttggcttctctgtccat	7	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61859037	T	T	61859037	2	4	168	1	0	0	0	0	0	0	0	1	3146	680	24	4		4	CDH8	16	61859037	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	97979	61859037	28495716	1581	138572											
CDH11	1009	broad.mit.edu	37	chr16	64981514	64981514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatcgttattgttaagaatCgtcatcaaaagtgtctttgg	9	5	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64981514	A	A	64981514	3	1	168	1	0	0	0	0	1	0	0	0	3127	884	31	3	11	3	CDH11	16	64981514	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3122477	64981514	25373239	1582	138573											
CDH5	1003	broad.mit.edu	37	chr16	66436991	66436991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctgacgtggattacgaCttccttaacgactggggacc	11	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66436991	A	A	66436991	3	1	168	1	0	0	0	0	1	0	0	0	3143	564	20	3	2316	3	CDH5	16	66436991	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1455477	66436991	23917762	1583	138574											
DYNC1LI2	1783	broad.mit.edu	37	chr16	66768032	66768032	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctttggcagaacactattCtgggtttgggaggtgcttta	12	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66768032	G	G	66768032	1	3	168	0	1	0	0	0	0	0	0	0	4885	928	32	4		4	DYNC1LI2	16	66768032	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	331041	66768032	23586721	1584	138575											
CES3	23491	broad.mit.edu	37	chr16	67006790	67006790	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggctctgcctccttggccCcaattcaaccaggcggaaca	9	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67006790	T	T	67006790	2	4	168	1	0	0	0	0	0	0	0	1	3301	610	22	4		4	CES3	16	67006790	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	238758	67006790	23347963	1585	138576											
E2F4	1874	broad.mit.edu	37	chr16	67228931	67228931	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcccaagaggtagtatctCtgtgttgtggaacaccatgc	12	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67228931	G	G	67228931	1	3	168	0	1	0	0	0	0	0	0	0	4909	928	32	4		4	E2F4	16	67228931	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	222141	67228931	23125822	1586	138577											
ATP6V0D1	9114	broad.mit.edu	37	chr16	67476968	67476968	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacagccccacccaccgacAggccaatcccccatggcttg	7	21	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67476968	T	T	67476968	1	4	168	0	1	0	0	0	0	0	0	0	1177	203	7	5		5	ATP6V0D1	16	67476968	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	248037	67476968	22877785	1587	138578											
CENPT	80152	broad.mit.edu	37	chr16	67862182	67862182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggccactactgggcaggGaagacagagttgccactgta	13	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67862182	T	T	67862182	3	4	168	1	0	0	0	0	1	0	0	0	3272	1165	41	3	15	3	CENPT	16	67862182	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	385214	67862182	22492571	1588	138579											
NFATC3	4775	broad.mit.edu	37	chr16	68225567	68225567	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatatgtcacagtttgtgtGatccagcgtcatttccacct	7	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68225567	A	A	68225567	3	1	168	1	0	0	0	0	1	0	0	0	10459	1290	45	4	3029	4	NFATC3	16	68225567	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	363385	68225567	22129186	1589	138580											
CDH1	999	broad.mit.edu	37	chr16	68835796	68835796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgccccccgccccatcaGgtatgttggcatttttctga	8	16	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68835796	T	T	68835796	3	4	168	1	0	0	0	0	1	0	0	0	3125	1014	35	2	397	2	CDH1	16	68835796	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	610229	68835796	21518957	1590	138581											
WWP2	11060	broad.mit.edu	37	chr16	69922200	69922200	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctcctcctcaaagactgAggctcctttacgggggtgga	11	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69922200	T	T	69922200	1	4	168	0	1	0	0	0	0	0	0	0	17543	319	11	5		5	WWP2	16	69922200	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1086404	69922200	20432553	1591	138582											
ZFHX3	463	broad.mit.edu	37	chr16	72830811	72830811	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggctcagaaccaccccCtggtgccaactctttcttct	8	15	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72830811	G	G	72830811	3	3	168	1	0	0	0	0	1	0	0	0	17760	681	24	4	5349	4	ZFHX3	16	72830811	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2908611	72830811	17523942	1592	138583											
CDYL2	124359	broad.mit.edu	37	chr16	80719049	80719049	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgatacaagatgagagggtCagaaaacagagagagaggga	16	4	1	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80719049	A	A	80719049	1	1	168	0	1	0	0	0	0	0	0	0	3216	841	29	3		3	CDYL2	16	80719049	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	7888238	80719049	9635704	1593	138584											
PKD1L2	114780	broad.mit.edu	37	chr16	81183300	81183300	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacactgggaattacccaagTccatcttttgctcagctggg	10	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81183300	A	A	81183300	3	1	168	1	0	0	0	0	1	0	0	0	12060	1667	58	5	2694	5	PKD1L2	16	81183300	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	464251	81183300	9171453	1594	138585											
KCNG4	93107	broad.mit.edu	37	chr16	84256316	84256316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagccccagcgtctgcagcCccagcgagtggcgagccagg	15	15	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84256316	A	A	84256316	3	1	168	1	0	0	0	0	1	0	0	0	8100	623	22	2	494	2	KCNG4	16	84256316	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3073016	84256316	6098437	1595	138586											
SPIRE2	84501	broad.mit.edu	37	chr16	89922515	89922515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaggtctcgcttccccaCcgcaggtctctgagaggcgg	13	16	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89922515	A	A	89922515	1	1	168	0	1	0	0	0	0	0	0	0	15190	522	18	3		3	SPIRE2	16	89922515	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5666199	89922515	432238	1596	138587											
PITPNA	5306	broad.mit.edu	37	chr17	1444790	1444790	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacagagaggaccccatggTagccctggagaggctacaag	13	12	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1444790	A	A	1444790	1	1	168	0	1	0	0	0	0	0	0	0	12042	1653	57	5		5	PITPNA	17	1444790	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08		1444790	79750420	1597	138588											
PRPF8	10594	broad.mit.edu	37	chr17	1559518	1559518	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagccaccacgcccggcccCaagagttgatttttaacttt	8	13	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1559518	T	T	1559518	1	4	168	0	1	0	0	0	0	0	0	0	12681	609	21	4		4	PRPF8	17	1559518	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	114728	1559518	79635692	1598	138589											
PRPF8	10594	broad.mit.edu	37	chr17	1564752	1564752	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgatctcatatgaggagctCagcactccttcctggccaaa	9	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1564752	A	A	1564752	1	1	168	0	1	0	0	0	0	0	0	0	12681	841	29	3		3	PRPF8	17	1564752	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5234	1564752	79630458	1599	138590											
TRPV3	162514	broad.mit.edu	37	chr17	3422138	3422138	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacttctcgatcagcgagGccaaggctaagggaacataa	11	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3422138	A	A	3422138	3	1	168	1	0	0	0	0	1	0	0	0	16722	1203	42	4	571	4	TRPV3	17	3422138	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1857386	3422138	77773072	1600	138591											
P2RX1	5023	broad.mit.edu	37	chr17	3819483	3819483	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggtgtcatactcgaagaGgaaggcggccagctcctcct	15	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3819483	A	A	3819483	3	1	168	1	0	0	0	0	1	0	0	0	11433	1000	35	4	1210	4	P2RX1	17	3819483	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	397345	3819483	77375727	1601	138592											
SPNS3	201305	broad.mit.edu	37	chr17	4390992	4390992	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttggatctggaatgtattCtgcatttgggacagagagga	15	4	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4390992	T	T	4390992	1	4	168	0	1	0	0	0	0	0	0	0	15194	928	32	4		4	SPNS3	17	4390992	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	571509	4390992	76804218	1602	138593											
PFN1	5216	broad.mit.edu	37	chr17	4849269	4849269	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaccaccgtggacaccttCtttgcccatcagcaggacta	7	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4849269	G	G	4849269	3	3	168	1	0	0	0	0	1	0	0	0	11862	922	32	4	77	4	PFN1	17	4849269	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	458277	4849269	76345941	1603	138594											
PFN1	5216	broad.mit.edu	37	chr17	4849328	4849328	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagaaaggaggctaggatcCaggtgtcacaattccacccc	11	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4849328	G	G	4849328	1	3	168	0	1	0	0	0	0	0	0	0	11862	609	21	4		4	PFN1	17	4849328	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	59	4849328	76345882	1604	138595											
ENO3	2027	broad.mit.edu	37	chr17	4858809	4858809	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcgcaatgggaagtacgatCttgacttcaagtcgcctgat	10	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4858809	G	G	4858809	3	3	168	1	0	0	0	0	1	0	0	0	5165	913	32	4	801	4	ENO3	17	4858809	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	9481	4858809	76336401	1605	138596											
KIF1C	10749	broad.mit.edu	37	chr17	4905404	4905404	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaccagagtgctcagctAtcctactctgtggaggtaag	12	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4905404	C	C	4905404	2	2	168	1	0	0	0	0	0	0	0	1	8355	436	16	5		5	KIF1C	17	4905404	Silent	SNP	A	TCGA-50-6590-01A-12D-1855-08	46595	4905404	76289806	1606	138597											
USP6	9098	broad.mit.edu	37	chr17	5048835	5048835	+	Frame_Shift_Del	DEL	C	-	-													ctttcaattttttgtctttgCcactaccaatggacagttac							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5048835	-	-	5048835	7	5	168	1	0	1	0	1	0	0	0	0	17213	739	26	0	2198	0	USP6	17	5048835	Frame_Shift_Del	DEL	C	TCGA-50-6590-01A-12D-1855-08	143431	5048835	76146375	1607	138598											
EIF4A1	1973	broad.mit.edu	37	chr17	7476125	7476125	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgggcgctctataagttgtcGataggcgggcactccgccct	13	13	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7476125	C	C	7476125	1	2	168	0	1	0	0	0	0	0	0	0	5066	1073	37	4		4	EIF4A1	17	7476125	5'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	2427290	7476125	73719085	1608	138599											
TP53	7157	broad.mit.edu	37	chr17	7578370	7578370	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccagccccagctgctcaCcatcgctatctgagcagcgc	8	18	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578370	A	A	7578370	5	1	168	1	0	0	0	0	0	0	1	0	16505	521	18	3	738	3	TP53	17	7578370	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	102245	7578370	73616840	1609	138600											
DNAH2	146754	broad.mit.edu	37	chr17	7660236	7660236	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagctcaagtgatccgcctGcctcggccccacaaagtgct	10	15	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7660236	A	A	7660236	1	1	168	0	1	0	0	0	0	0	0	0	4642	1334	46	4		4	DNAH2	17	7660236	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	81866	7660236	73534974	1610	138601											
DNAH2	146754	broad.mit.edu	37	chr17	7679508	7679508	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgagggaacaaggggctggGcacggtggctcacgcctgta	18	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7679508	C	C	7679508	1	2	168	0	1	0	0	0	0	0	0	0	4642	1218	42	4		4	DNAH2	17	7679508	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	19272	7679508	73515702	1611	138602											
KDM6B	23135	broad.mit.edu	37	chr17	7749569	7749569	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccacagcgcccttcgatacgGaggaagcttcgctgagctgg	13	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7749569	C	C	7749569	3	2	168	1	0	0	0	0	1	0	0	0	8208	1174	41	4	420	4	KDM6B	17	7749569	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	70061	7749569	73445641	1612	138603											
WDR16	146845	broad.mit.edu	37	chr17	9536222	9536222	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcatggaacgacggtaaaAtccgagccttcgccccagag	11	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9536222	C	C	9536222	3	2	168	1	0	0	0	0	1	0	0	0	17403	101	4	5	1230	5	WDR16	17	9536222	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1786653	9536222	71658988	1613	138604											
GAS7	8522	broad.mit.edu	37	chr17	9822901	9822901	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccaggggctgctctgtgtCagcctctgtactgccatgtc	11	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9822901	A	A	9822901	1	1	168	0	1	0	0	0	0	0	0	0	6312	841	29	3		3	GAS7	17	9822901	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	286679	9822901	71372309	1614	138605											
MYH8	4626	broad.mit.edu	37	chr17	10315661	10315661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagcccacaattgcctcctTcttaattcttgttaatataa	3	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10315661	A	A	10315661	1	1	168	0	1	0	0	0	0	0	0	0	10135	1798	62	5		5	MYH8	17	10315661	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	492760	10315661	70879549	1615	138606											
MYH4	4622	broad.mit.edu	37	chr17	10363241	10363241	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacaagaggatttgcactgGctaattttctgtcagttcac	8	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10363241	C	C	10363241	1	2	168	0	1	0	0	0	0	0	0	0	10131	1218	42	4		4	MYH4	17	10363241	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	47580	10363241	70831969	1616	138607											
MYH1	4619	broad.mit.edu	37	chr17	10398481	10398481	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacattaagatttaagtttGaccaccactgtgttaccctt	6	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10398481	A	A	10398481	1	1	168	0	1	0	0	0	0	0	0	0	10123	1305	45	4		4	MYH1	17	10398481	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	35240	10398481	70796729	1617	138608											
MYH1	4619	broad.mit.edu	37	chr17	10408159	10408159	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagttgcaagtcatttttttCttgcatcagagtaaccattt	7	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10408159	G	G	10408159	3	3	168	1	0	0	0	0	1	0	0	0	10123	922	32	4	3236	4	MYH1	17	10408159	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	9678	10408159	70787051	1618	138609											
MYH2	4620	broad.mit.edu	37	chr17	10428484	10428484	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctttttattcactctaTgcagatgtacctaattattt	5	7	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10428484	A	A	10428484	1	1	168	0	1	0	0	0	0	0	0	0	10129	1479	51	5		5	MYH2	17	10428484	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	20325	10428484	70766726	1619	138610											
MYH2	4620	broad.mit.edu	37	chr17	10435251	10435251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgtgtggttgatgcaatGggatgaaaccttggcagtga	14	4	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10435251	T	T	10435251	1	4	168	0	1	0	0	0	0	0	0	0	10129	1363	47	2		2	MYH2	17	10435251	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6767	10435251	70759959	1620	138611											
MYH3	4621	broad.mit.edu	37	chr17	10533025	10533025	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgagcctttcggaatttGgtgagatgagcattggcttg	14	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10533025	C	C	10533025	2	2	168	1	0	0	0	0	0	0	0	1	10130	1335	47	4		4	MYH3	17	10533025	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	97774	10533025	70662185	1621	138612											
MYH3	4621	broad.mit.edu	37	chr17	10537274	10537274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagccacacccacgccagCatgctctcgagcaatagagc	9	15	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10537274	A	A	10537274	1	1	168	0	1	0	0	0	0	0	0	0	10130	725	25	3		3	MYH3	17	10537274	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4249	10537274	70657936	1622	138613											
DNAH9	1770	broad.mit.edu	37	chr17	11572978	11572978	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctctatgaagaggtgtgcAggctggaacccatcaaggtg	14	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11572978	T	T	11572978	3	4	168	1	0	0	0	0	1	0	0	0	4648	179	7	5	3286	5	DNAH9	17	11572978	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1035704	11572978	69622232	1623	138614											
DNAH9	1770	broad.mit.edu	37	chr17	11597192	11597192	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttatttgcaggattctaAaaggtttgaaggcatcgaca	9	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11597192	T	T	11597192	3	4	168	1	0	0	0	0	1	0	0	0	4648	14	1	5	4704	5	DNAH9	17	11597192	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	24214	11597192	69598018	1624	138615											
ZNF287	57336	broad.mit.edu	37	chr17	16456492	16456492	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattaggtttgaatgcttttCaaaattatttctatatatat	4	3	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16456492	G	G	16456492	3	3	168	1	0	0	0	0	1	0	0	0	17951	835	29	4	1325	4	ZNF287	17	16456492	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4859300	16456492	64738718	1625	138616											
AKAP10	11216	broad.mit.edu	37	chr17	19813325	19813325	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaaaattgaatgtacatttCatgcataattttacattaaa	3	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19813325	G	G	19813325	1	3	168	0	1	0	0	0	0	0	0	0	446	841	29	4		4	AKAP10	17	19813325	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3356833	19813325	61381885	1626	138617											
MAP2K3	5606	broad.mit.edu	37	chr17	21207866	21207866	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaagccctacatggccGtgagtggtccccaagccccc	11	17	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21207866	A	A	21207866	5	1	168	1	0	0	0	0	0	0	1	0	9330	1159	40	4	727	4	MAP2K3	17	21207866	Splice_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	1394541	21207866	59987344	1627	138618											
KIAA0100	9703	broad.mit.edu	37	chr17	26942339	26942339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatcaaaatgaaccaagaCaataaagatttattaaacac	3	6	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26942339	A	A	26942339	1	1	168	0	1	0	0	0	0	0	0	0	8224	493	17	3		3	KIAA0100	17	26942339	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	5734473	26942339	54252871	1628	138619											
FLOT2	2319	broad.mit.edu	37	chr17	27216019	27216019	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccgccaaacacgtactgTttatagtcggaaccacaaca	7	13	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27216019	G	G	27216019	3	3	168	1	0	0	0	0	1	0	0	0	5995	1722	60	5	1251	5	FLOT2	17	27216019	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	273680	27216019	53979191	1629	138620											
SSH2	85464	broad.mit.edu	37	chr17	28003892	28003892	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaactctgttatccgtcgatAcactgaacccactaaggaca	7	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28003892	T	T	28003892	3	4	168	1	0	0	0	0	1	0	0	0	15303	391	14	5	3828	5	SSH2	17	28003892	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	787873	28003892	53191318	1630	138621											
EFCAB5	374786	broad.mit.edu	37	chr17	28417509	28417509	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggagaaacgcatataGtagttccacttcgtgagaga	11	8	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28417509	A	A	28417509	3	1	168	1	0	0	0	0	1	0	0	0	4978	1029	36	4	3999	4	EFCAB5	17	28417509	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	413617	28417509	52777701	1631	138622											
ATAD5	79915	broad.mit.edu	37	chr17	29221104	29221104	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagagatccaaccaacgatCttactttttatgtttcacaa	5	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29221104	G	G	29221104	3	3	168	1	0	0	0	0	1	0	0	0	1080	913	32	4	5315	4	ATAD5	17	29221104	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	803595	29221104	51974106	1632	138623											
UTP6	55813	broad.mit.edu	37	chr17	30216303	30216303	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatgtgcatacacactcaCttctttataaagttttgggc	6	10	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30216303	A	A	30216303	5	1	168	1	0	0	0	0	0	0	1	0	17229	579	20	3	1301	3	UTP6	17	30216303	Splice_Site	SNP	C	TCGA-50-6590-01A-12D-1855-08	995199	30216303	50978907	1633	138624											
MYO1D	4642	broad.mit.edu	37	chr17	31105561	31105561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatactgcataatgtacttaCtggcttccgttttaccagct	6	10	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31105561	A	A	31105561	3	1	168	1	0	0	0	0	1	0	0	0	10165	565	20	3	2765	3	MYO1D	17	31105561	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	889258	31105561	50089649	1634	138625											
SLFN11	91607	broad.mit.edu	37	chr17	33690603	33690603	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagactgttctaaatccAgtcccatctccacgggatgc	7	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33690603	T	T	33690603	3	4	168	1	0	0	0	0	1	0	0	0	14847	188	7	5	2497	5	SLFN11	17	33690603	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2585042	33690603	47504607	1635	138626											
GAS2L2	246176	broad.mit.edu	37	chr17	34072748	34072748	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgttcccgcccaagggcaGaggtgtgtaccgcccctcct	11	16	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34072748	A	A	34072748	2	1	168	1	0	0	0	0	0	0	0	1	6309	933	33	4		4	GAS2L2	17	34072748	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	382145	34072748	47122462	1636	138627											
TBC1D3B	414059	broad.mit.edu	37	chr17	34493270	34493270	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgagctgcactctttcttaAtacattttcataagtttaac	4	9	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34493270	G	G	34493270	1	3	168	0	1	0	0	0	0	0	0	0	15740	116	4	5		5	TBC1D3B	17	34493270	3'UTR	SNP	A	TCGA-50-6590-01A-12D-1855-08	420522	34493270	46701940	1637	138628											
TBC1D3G	654341	broad.mit.edu	37	chr17	34797366	34797366	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctgaatgtctctcaagCtgcactctttcttaatacat	4	11	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34797366	A	A	34797366	1	1	168	0	1	0	0	0	0	0	0	0	15743	812	28	3		3	TBC1D3G	17	34797366	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	304096	34797366	46397844	1638	138629											
ZNHIT3	9326	broad.mit.edu	37	chr17	34842563	34842563	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggcgtcgctcaaatgtaGcaccgtcgtctgcgtgatct	11	12	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34842563	T	T	34842563	3	4	168	1	0	0	0	0	1	0	0	0	18337	971	34	3	22	3	ZNHIT3	17	34842563	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	45197	34842563	46352647	1639	138630											
GGNBP2	79893	broad.mit.edu	37	chr17	34941772	34941772	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagctgcaaagcctgtggcAgcactgaagatggtaatact	12	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34941772	T	T	34941772	3	4	168	1	0	0	0	0	1	0	0	0	6423	188	7	5	1292	5	GGNBP2	17	34941772	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	99209	34941772	46253438	1640	138631											
CWC25	54883	broad.mit.edu	37	chr17	36962616	36962616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgggctcctagtttggCctgtctctctcctgttcacc	10	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36962616	A	A	36962616	3	1	168	1	0	0	0	0	1	0	0	0	4102	739	26	3	354	3	CWC25	17	36962616	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2020844	36962616	44232594	1641	138632											
PSMD3	5709	broad.mit.edu	37	chr17	38146160	38146160	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccaacaacaatgagtgGgccaggtacctctactacac	9	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38146160	T	T	38146160	3	4	168	1	0	0	0	0	1	0	0	0	12805	1241	43	2	873	2	PSMD3	17	38146160	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1183544	38146160	43049050	1642	138633											
KRT24	192666	broad.mit.edu	37	chr17	38859404	38859404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaccgtctccagacccaGgcccatatttgtcataccac	5	17	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38859404	T	T	38859404	3	4	168	1	0	0	0	0	1	0	0	0	8532	1000	35	2	1067	2	KRT24	17	38859404	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	713244	38859404	42335806	1643	138634											
KRT32	3882	broad.mit.edu	37	chr17	39623522	39623522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaccgaggcaggccggGggcagctcttgagagaggct	17	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39623522	T	T	39623522	3	4	168	1	0	0	0	0	1	0	0	0	8539	1232	43	2	1318	2	KRT32	17	39623522	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	764118	39623522	41571688	1644	138635											
DHX8	1659	broad.mit.edu	37	chr17	41567782	41567782	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcttattagtaacttgctGcgtctcatacaaaccatgcg	6	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41567782	C	C	41567782	2	2	168	1	0	0	0	0	0	0	0	1	4555	1306	46	4		4	DHX8	17	41567782	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1944260	41567782	39627428	1645	138636											
DHX8	1659	broad.mit.edu	37	chr17	41569554	41569554	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcctctacctctgcagaccAtgttggatgaagatgatgtg	12	9	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41569554	T	T	41569554	3	4	168	1	0	0	0	0	1	0	0	0	4555	217	8	5	415	5	DHX8	17	41569554	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1772	41569554	39625656	1646	138637											
HDAC5	10014	broad.mit.edu	37	chr17	42156292	42156292	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagggtggggagtagggttGccatgcatacccctctaact	13	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42156292	A	A	42156292	1	1	168	0	1	0	0	0	0	0	0	0	7077	1334	46	4		4	HDAC5	17	42156292	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	586738	42156292	39038918	1647	138638											
GPATCH8	23131	broad.mit.edu	37	chr17	42475588	42475588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaatactaggatccccaCtgggaggtgcataactgggg	12	10	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42475588	A	A	42475588	3	1	168	1	0	0	0	0	1	0	0	0	6659	565	20	3	655	3	GPATCH8	17	42475588	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	319296	42475588	38719622	1648	138639											
GJC1	10052	broad.mit.edu	37	chr17	42882068	42882068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttggacccagctttggacCccactttggccttcttctcc	8	15	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42882068	A	A	42882068	3	1	168	1	0	0	0	0	1	0	0	0	6478	623	22	2	76	2	GJC1	17	42882068	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	406480	42882068	38313142	1649	138640											
EFTUD2	9343	broad.mit.edu	37	chr17	42953452	42953452	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcatgcttgatcagccgcTctgtgttcagcatcacctga	9	14	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42953452	A	A	42953452	3	1	168	1	0	0	0	0	1	0	0	0	5001	1551	54	5	2275	5	EFTUD2	17	42953452	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	71384	42953452	38241758	1650	138641											
KIAA1267	284058	broad.mit.edu	37	chr17	44116524	44116525	+	Missense_Mutation	DNP	AC	CA	CA													ccaccatgggcacggcccccAcatcgtctaagtgctgcctg							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	44116525	CA	CA	44116524	3	2	168	1	0	0	0	0	1	0	0	0	8289	159	6	5	1084	5	KIAA1267	17	44116524	Missense_Mutation	DNP	AC	TCGA-50-6590-01A-12D-1855-08	1163072	44116524	37078686	1651	138642											
C17orf57	124989	broad.mit.edu	37	chr17	45451949	45451949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttgtcttccaaactccCtgaaccttcaatatccaaaa	3	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45451949	A	A	45451949	3	1	168	1	0	0	0	0	1	0	0	0	1881	681	24	2	1023	2	C17orf57	17	45451949	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1335425	45451949	35743261	1652	138643											
CACNA1G	8913	broad.mit.edu	37	chr17	48699019	48699019	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcatctctctccctgtctAgatccctctagctgagatgg	8	13	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48699019	G	G	48699019	5	3	168	1	0	0	0	0	0	0	1	0	2570	434	15	5	6329	5	CACNA1G	17	48699019	Splice_Site	SNP	A	TCGA-50-6590-01A-12D-1855-08	3247070	48699019	32496191	1653	138644											
TRIM25	7706	broad.mit.edu	37	chr17	54978736	54978736	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttaggggacccatcgggtTgcagggttccacagggggca	16	9	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54978736	G	G	54978736	1	3	168	0	1	0	0	0	0	0	0	0	16623	1827	63	5		5	TRIM25	17	54978736	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	6279717	54978736	26216474	1654	138645											
OR4D2	124538	broad.mit.edu	37	chr17	56247594	56247594	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttgcctgcactgacacctCactgctggagttcctcaaga	8	14	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56247594	T	T	56247594	3	4	168	1	0	0	0	0	1	0	0	0	11150	838	29	4	580	4	OR4D2	17	56247594	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1268858	56247594	24947616	1655	138646											
PPM1D	8493	broad.mit.edu	37	chr17	58725272	58725272	+	Frame_Shift_Del	DEL	T	-	-													ggtgatttgtggagctatgaTttcttcagtggtgaatttgt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58725272	-	-	58725272	7	5	168	1	0	1	0	1	0	0	0	0	12438	1490	52	0	860	0	PPM1D	17	58725272	Frame_Shift_Del	DEL	T	TCGA-50-6590-01A-12D-1855-08	2477678	58725272	22469938	1656	138647											
PPM1D	8493	broad.mit.edu	37	chr17	58725327	58725327	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagacacaagtgtccacactCttgaccctcagaagcacaag	7	14	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58725327	A	A	58725327	3	1	168	1	0	0	0	0	1	0	0	0	12438	913	32	3	915	3	PPM1D	17	58725327	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	55	58725327	22469883	1657	138648											
BCAS3	54828	broad.mit.edu	37	chr17	59093252	59093252	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacattggggaccatcaccAaacgaaccgggtaaggcctt	11	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59093252	C	C	59093252	3	2	168	1	0	0	0	0	1	0	0	0	1357	131	5	5	1685	5	BCAS3	17	59093252	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	367925	59093252	22101958	1658	138649											
BCAS3	54828	broad.mit.edu	37	chr17	59115345	59115345	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgcgacccctcagcactGcacccaagattagtgacgac	9	16	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59115345	A	A	59115345	3	1	168	1	0	0	0	0	1	0	0	0	1357	1319	46	4	1973	4	BCAS3	17	59115345	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	22093	59115345	22079865	1659	138650											
TBX2	6909	broad.mit.edu	37	chr17	59477534	59477534	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgggcgcctgggccggatgtCccgatgagagagccggcgct	18	13	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59477534	T	T	59477534	1	4	168	0	1	0	0	0	0	0	0	0	15777	870	30	4		4	TBX2	17	59477534	5'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	362189	59477534	21717676	1660	138651											
TANC2	26115	broad.mit.edu	37	chr17	61498018	61498018	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctatagatcccagtctGgttcacccgtgcgctatcag	10	12	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61498018	C	C	61498018	3	2	168	1	0	0	0	0	1	0	0	0	15664	1348	47	4	4773	4	TANC2	17	61498018	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2020484	61498018	19697192	1661	138652											
GH1	2688	broad.mit.edu	37	chr17	61995703	61995703	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacccattccccaagagctTacaaactcctggtaggtgtc	8	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61995703	A	A	61995703	1	1	168	0	1	0	0	0	0	0	0	0	6431	1769	61	5		5	GH1	17	61995703	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	497685	61995703	19199507	1662	138653											
SCN4A	6329	broad.mit.edu	37	chr17	62021054	62021054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttacccccatcagtcccCtaggcaggagcctggcagca	9	16	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62021054	A	A	62021054	1	1	168	0	1	0	0	0	0	0	0	0	14033	696	24	2		2	SCN4A	17	62021054	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	25351	62021054	19174156	1663	138654											
CACNG1	786	broad.mit.edu	37	chr17	65040999	65040999	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgggcccatcaccctgCccgggggtaacgtacccacc	11	19	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65040999	G	G	65040999	3	3	168	1	0	0	0	0	1	0	0	0	2582	739	26	4	225	4	CACNG1	17	65040999	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3019945	65040999	16154211	1664	138655											
PSMD12	5718	broad.mit.edu	37	chr17	65346486	65346486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccattcataagtaaaataCattcctcacagagcgaaaaa	4	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65346486	A	A	65346486	1	1	168	0	1	0	0	0	0	0	0	0	12801	493	17	3		3	PSMD12	17	65346486	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	305487	65346486	15848724	1665	138656											
ABCA8	10351	broad.mit.edu	37	chr17	66920869	66920869	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctttcccttggaattctGgaggcgcttgttcaaaagag	10	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66920869	A	A	66920869	3	1	168	1	0	0	0	0	1	0	0	0	38	1348	47	4	3446	4	ABCA8	17	66920869	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1574383	66920869	14274341	1666	138657											
ABCA9	10350	broad.mit.edu	37	chr17	67024005	67024005	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggaaaatgtgtcatgcttCattgaagatcttttaaaatg	8	5	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67024005	T	T	67024005	1	4	168	0	1	0	0	0	0	0	0	0	39	841	29	4		4	ABCA9	17	67024005	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	103136	67024005	14171205	1667	138658											
ABCA6	23460	broad.mit.edu	37	chr17	67111489	67111489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattctattataagacatctTgcctttgagaaatttctttt	4	7	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67111489	A	A	67111489	1	1	168	0	1	0	0	0	0	0	0	0	36	1827	63	5		5	ABCA6	17	67111489	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	87484	67111489	14083721	1668	138659											
SOX9	6662	broad.mit.edu	37	chr17	70118928	70118928	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcgcgtgcagcacaagaAggaccacccggattacaagt	12	12	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70118928	C	C	70118928	3	2	168	1	0	0	0	0	1	0	0	0	15072	72	3	5	506	5	SOX9	17	70118928	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	3007439	70118928	11076282	1669	138660											
KIF19	124602	broad.mit.edu	37	chr17	72348945	72348945	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctaactgtccaccctggCtccctcctccccaggacagc	6	20	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72348945	T	T	72348945	1	4	168	0	1	0	0	0	0	0	0	0	8352	812	28	4		4	KIF19	17	72348945	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2230017	72348945	8846265	1670	138661											
CD300A	11314	broad.mit.edu	37	chr17	72469746	72469746	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgagtgtgcagtgtcccTatgagaaggaacacaggacc	12	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72469746	A	A	72469746	3	1	168	1	0	0	0	0	1	0	0	0	3026	1522	53	5	118	5	CD300A	17	72469746	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	120801	72469746	8725464	1671	138662											
CD300A	11314	broad.mit.edu	37	chr17	72470716	72470716	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatcactgcggccaagacctCaacaatcacaactgcatttc	5	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72470716	G	G	72470716	4	3	168	1	0	0	0	0	0	1	0	0	3026	838	29	4	435	4	CD300A	17	72470716	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	970	72470716	8724494	1672	138663											
OTOP2	92736	broad.mit.edu	37	chr17	72923430	72923430	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgctggtgttcaccttgcagGagagattcaggctttccacc	11	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72923430	C	C	72923430	1	2	168	0	1	0	0	0	0	0	0	0	11400	1189	41	4		4	OTOP2	17	72923430	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	452714	72923430	8271780	1673	138664											
OTOP3	347741	broad.mit.edu	37	chr17	72938166	72938166	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacgtccccacatcaccgagGacataccctatctacccatg	5	18	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72938166	C	C	72938166	1	2	168	0	1	0	0	0	0	0	0	0	11401	1189	41	4		4	OTOP3	17	72938166	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	14736	72938166	8257044	1674	138665											
ATP5H	10476	broad.mit.edu	37	chr17	73036053	73036053	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattcgtccatgttgttGcatttattgacaagtcattc	7	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73036053	A	A	73036053	1	1	168	0	1	0	0	0	0	0	0	0	1160	1334	46	4		4	ATP5H	17	73036053	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	97887	73036053	8159157	1675	138666											
GGA3	23163	broad.mit.edu	37	chr17	73237030	73237030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagggaggattgggatgCctgaggagggtggagtaggt	23	2	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73237030	A	A	73237030	3	1	168	1	0	0	0	0	1	0	0	0	6418	739	26	3	1232	3	GGA3	17	73237030	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	200977	73237030	7958180	1676	138667											
RECQL5	9400	broad.mit.edu	37	chr17	73657728	73657728	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacacccctgcagctgagctCtatggccagctgttcacaag	9	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73657728	G	G	73657728	3	3	168	1	0	0	0	0	1	0	0	0	13311	922	32	4	2294	4	RECQL5	17	73657728	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	420698	73657728	7537482	1677	138668											
RECQL5	9400	broad.mit.edu	37	chr17	73658542	73658542	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctaacagctgcttggcctCcacctcaatgcctcacccct	5	19	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73658542	T	T	73658542	1	4	168	0	1	0	0	0	0	0	0	0	13311	870	30	4		4	RECQL5	17	73658542	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	814	73658542	7536668	1678	138669											
EXOC7	23265	broad.mit.edu	37	chr17	74080340	74080340	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgactcaccttaaaacgctCcttgataatctgccgctcct	5	16	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74080340	G	G	74080340	3	3	168	1	0	0	0	0	1	0	0	0	5352	864	30	4	259	4	EXOC7	17	74080340	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	421798	74080340	7114870	1679	138670											
RHBDF2	79651	broad.mit.edu	37	chr17	74470538	74470538	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcccgctccaggtctcgctCgcgcagcaccagctgctcga	11	18	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74470538	T	T	74470538	3	4	168	1	0	0	0	0	1	0	0	0	13429	893	31	4	1134	4	RHBDF2	17	74470538	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	390198	74470538	6724672	1680	138671											
RHBDF2	79651	broad.mit.edu	37	chr17	74475819	74475819	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaggggggctcacttgcGgatgctctgggacagtgagg	19	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74475819	A	A	74475819	3	1	168	1	0	0	0	0	1	0	0	0	13429	1116	39	4	2279	4	RHBDF2	17	74475819	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5281	74475819	6719391	1681	138672											
MFSD11	79157	broad.mit.edu	37	chr17	74765921	74765921	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaagccttattggactttCtggcattttcatcggcattg	9	8	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74765921	G	G	74765921	3	3	168	1	0	0	0	0	1	0	0	0	9622	913	32	4	880	4	MFSD11	17	74765921	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	290102	74765921	6429289	1682	138673											
CCDC40	55036	broad.mit.edu	37	chr17	78055328	78055328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacacgtaactggctctccCcgctgcatttctacagagga	8	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78055328	A	A	78055328	1	1	168	0	1	0	0	0	0	0	0	0	2839	638	22	2		2	CCDC40	17	78055328	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3289407	78055328	3139882	1683	138674											
NPLOC4	55666	broad.mit.edu	37	chr17	79563220	79563220	+	Frame_Shift_Del	DEL	G	-	-													catgttgggatgcttgttctGgaagtctcctgcagtgatgc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79563220	-	-	79563220	7	5	168	1	0	1	0	1	0	0	0	0	10681	1357	47	0	812	0	NPLOC4	17	79563220	Frame_Shift_Del	DEL	G	TCGA-50-6590-01A-12D-1855-08	1507892	79563220	1631990	1684	138675											
SIRT7	51547	broad.mit.edu	37	chr17	79872196	79872196	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggaccctagacacaggaTggtgtctgctctgctggcag	14	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79872196	A	A	79872196	3	1	168	1	0	0	0	0	1	0	0	0	14456	1464	51	5	428	5	SIRT7	17	79872196	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	308976	79872196	1323014	1685	138676											
CD7	924	broad.mit.edu	37	chr17	80273286	80273286	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgccgaattcttatcccGccacgagcacagtttcttta	7	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80273286	T	T	80273286	2	4	168	1	0	0	0	0	0	0	0	1	3062	1086	38	3		3	CD7	17	80273286	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	401090	80273286	921924	1686	138677											
ZNF750	79755	broad.mit.edu	37	chr17	80789947	80789947	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccctgtggagggctggcttCtgtcccaggcacctgtgggt	16	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80789947	T	T	80789947	2	4	168	1	0	0	0	0	0	0	0	1	18261	912	32	4		4	ZNF750	17	80789947	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	516661	80789947	405263	1687	138678											
LAMA1	284217	broad.mit.edu	37	chr18	6959383	6959383	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgcgcttgtccatcacTgcaggtacccgtgggagcgt	14	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6959383	A	A	6959383	3	1	168	1	0	0	0	0	1	0	0	0	8677	1580	55	5	1532	5	LAMA1	18	6959383	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08		6959383	71117865	1688	138679											
PTPRM	5797	broad.mit.edu	37	chr18	8143587	8143587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgaaattttttaaactgtGgcatctttattctctcttac	5	8	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8143587	T	T	8143587	1	4	168	0	1	0	0	0	0	0	0	0	12914	1363	47	2		2	PTPRM	18	8143587	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1184204	8143587	69933661	1689	138680											
CEP76	79959	broad.mit.edu	37	chr18	12674622	12674622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaccatcaggtacagccCttcttatggcatcttgaaat	8	10	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12674622	A	A	12674622	3	1	168	1	0	0	0	0	1	0	0	0	3291	681	24	2	233	2	CEP76	18	12674622	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	4531035	12674622	65402626	1690	138681											
ANKRD30B	374860	broad.mit.edu	37	chr18	14782613	14782613	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agataaatagagaagtagaaGgtaagaacaactttttattt	8	2	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14782613	T	T	14782613	4	4	168	1	0	0	0	0	0	1	0	0	659	1014	35	2	1616	2	ANKRD30B	18	14782613	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2107991	14782613	63294635	1691	138682											
ANKRD30B	374860	broad.mit.edu	37	chr18	14822464	14822464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgtataatcaattatatAtgtcccttttcttttagagt	5	6	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14822464	G	G	14822464	1	3	168	0	1	0	0	0	0	0	0	0	659	464	16	5		5	ANKRD30B	18	14822464	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	39851	14822464	63254784	1692	138683											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851756	14851756	+	Frame_Shift_Del	DEL	G	-	-													gagcagcttaaagttctgacGgcagagaacacgatgctgac					rs148887033	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14851756	-	-	14851756	7	5	168	1	0	1	0	1	0	0	0	0	659	1103	39	0	3598	0	ANKRD30B	18	14851756	Frame_Shift_Del	DEL	G	TCGA-50-6590-01A-12D-1855-08	29292	14851756	63225492	1693	138684											
ZNF521	25925	broad.mit.edu	37	chr18	22804792	22804792	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttgagttccaaggtggaGgtcactgtctgcatgcacac	11	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804792	A	A	22804792	2	1	168	1	0	0	0	0	0	0	0	1	18092	987	35	4		4	ZNF521	18	22804792	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	7953036	22804792	55272456	1694	138685											
CDH2	1000	broad.mit.edu	37	chr18	25562964	25562964	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaatattatctcttacatCatcttctggatcaattaaaa	2	7	5	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25562964	T	T	25562964	3	4	168	1	0	0	0	0	1	0	0	0	3135	826	29	4	439	4	CDH2	18	25562964	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2758172	25562964	52514284	1695	138686											
DSC3	1825	broad.mit.edu	37	chr18	28586948	28586948	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaaataaaatggagctcCatggacaggttcatcaggat	10	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28586948	A	A	28586948	4	1	168	1	0	0	0	0	0	1	0	0	4807	603	21	2	928	2	DSC3	18	28586948	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3023984	28586948	49490300	1696	138687											
DSG4	147409	broad.mit.edu	37	chr18	28993189	28993189	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaatgctgatccatgtgtGcaacccactacaattatttt	7	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28993189	A	A	28993189	2	1	168	1	0	0	0	0	0	0	0	1	4819	1306	46	4		4	DSG4	18	28993189	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	406241	28993189	49084059	1697	138688											
DSG3	1830	broad.mit.edu	37	chr18	29040804	29040804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaaattagcaagctagCagctatcgtctggttgtgag	10	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29040804	A	A	29040804	3	1	168	1	0	0	0	0	1	0	0	0	4818	709	25	3	719	3	DSG3	18	29040804	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	47615	29040804	49036444	1698	138689											
KLHL14	57565	broad.mit.edu	37	chr18	30349928	30349928	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagcacatcctccacCaggtacttgttggccagctt	9	14	0	0	rs141522910		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30349928	A	A	30349928	2	1	168	1	0	0	0	0	0	0	0	1	8441	581	21	2		2	KLHL14	18	30349928	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1309124	30349928	47727320	1699	138690											
ZNF396	252884	broad.mit.edu	37	chr18	32953382	32953382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggtgagcagagggcccCcacaccttccaacatgaact	11	13	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32953382	A	A	32953382	1	1	168	0	1	0	0	0	0	0	0	0	18009	638	22	2		2	ZNF396	18	32953382	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2603454	32953382	45123866	1700	138691											
FHOD3	80206	broad.mit.edu	37	chr18	34081919	34081919	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actatacaactccagcggacGagatttgagaagggccctct	10	11	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34081919	A	A	34081919	3	1	168	1	0	0	0	0	1	0	0	0	5940	1058	37	4	376	4	FHOD3	18	34081919	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1128537	34081919	43995329	1701	138692											
RIT2	6014	broad.mit.edu	37	chr18	40500652	40500652	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcattaagaatacaggcacCtattcttaccaaatatgaaa	5	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40500652	A	A	40500652	1	1	168	0	1	0	0	0	0	0	0	0	13498	696	24	2		2	RIT2	18	40500652	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	6418733	40500652	37576596	1702	138693											
SYT4	6860	broad.mit.edu	37	chr18	40850492	40850492	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatatcttcaaggccctcAcaaggaatatcaaagacaaa	5	10	4	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40850492	T	T	40850492	4	4	168	1	0	0	0	0	0	1	0	0	15595	157	6	5	189	5	SYT4	18	40850492	Nonsense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	349840	40850492	37226756	1703	138694											
SETBP1	26040	broad.mit.edu	37	chr18	42532590	42532591	+	Missense_Mutation	DNP	CC	AA	AA													acagtgccaccacctcagttCcacacaaactcccacgtaaa							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	42532591	AA	AA	42532590	3	1	168	1	0	0	0	0	1	0	0	0	14242	854	30	3	3488	3	SETBP1	18	42532590	Missense_Mutation	DNP	CC	TCGA-50-6590-01A-12D-1855-08	1682098	42532590	35544658	1704	138695											
SIGLEC15	284266	broad.mit.edu	37	chr18	43418899	43418900	+	Frame_Shift_Ins	INS	-	A	A													gacggccgctacacgtgtacINSggccgccaacagcctgggcc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43418900	A	A	43418899	7	5	168	1	0	1	1	0	0	0	0	0	14423	536	19	0	727	0	SIGLEC15	18	43418899	Frame_Shift_Ins	INS	-	TCGA-50-6590-01A-12D-1855-08	886309	43418899	34658349	1705	138696											
TCEB3B	51224	broad.mit.edu	37	chr18	44561107	44561107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccctcgggcatccggagggGagctgtgcgcgttggagagg	20	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44561107	T	T	44561107	3	4	168	1	0	0	0	0	1	0	0	0	15804	1174	41	3	1736	3	TCEB3B	18	44561107	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1142208	44561107	33516141	1706	138697											
DCC	1630	broad.mit.edu	37	chr18	50831975	50831975	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagttagctggctgcctcctCcatcaggaacacaaaatgga	9	11	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50831975	T	T	50831975	3	4	168	1	0	0	0	0	1	0	0	0	4315	855	30	4	1989	4	DCC	18	50831975	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	6270868	50831975	27245273	1707	138698											
TCF4	6925	broad.mit.edu	37	chr18	52896444	52896444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagaatttttatatccaCttgaccttgggattggttta	9	6	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52896444	A	A	52896444	1	1	168	0	1	0	0	0	0	0	0	0	15817	580	20	3		3	TCF4	18	52896444	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2064469	52896444	25180804	1708	138699											
FECH	2235	broad.mit.edu	37	chr18	55247342	55247342	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggttttgcaccctgggCatgctgggctgtttctgtgg	15	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55247342	A	A	55247342	3	1	168	1	0	0	0	0	1	0	0	0	5865	710	25	3	1172	3	FECH	18	55247342	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2350898	55247342	22829906	1709	138700											
PIGN	23556	broad.mit.edu	37	chr18	59821947	59821947	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaactatcataaaatatGagctagtcattcacagattt	4	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59821947	T	T	59821947	1	4	168	0	1	0	0	0	0	0	0	0	11988	1305	45	3		3	PIGN	18	59821947	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4574605	59821947	18255301	1710	138701											
SERPINB12	89777	broad.mit.edu	37	chr18	61231325	61231325	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atactttgaccatgaaaacaCggtggatgcacctttctgtc	8	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61231325	G	G	61231325	3	3	168	1	0	0	0	0	1	0	0	0	14212	536	19	4	635	4	SERPINB12	18	61231325	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1409378	61231325	16845923	1711	138702											
SERPINB7	8710	broad.mit.edu	37	chr18	61460485	61460485	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcattgtgaatgggctttttGctgaaaaagtgtatggcttt	12	4	0	2	rs142252651		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61460485	C	C	61460485	3	2	168	1	0	0	0	0	1	0	0	0	14219	1319	46	4	320	4	SERPINB7	18	61460485	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	229160	61460485	16616763	1712	138703											
SERPINB2	5055	broad.mit.edu	37	chr18	61558726	61558726	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctttgccctcaatttattCaagcatctggcaaaagcaag	6	11	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61558726	G	G	61558726	3	3	168	1	0	0	0	0	1	0	0	0	14214	825	29	4	50	4	SERPINB2	18	61558726	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	98241	61558726	16518522	1713	138704											
CDH7	1005	broad.mit.edu	37	chr18	63530201	63530201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagagctgtcacaataacCacatgtcacgacttgcctat	7	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63530201	A	A	63530201	1	1	168	0	1	0	0	0	0	0	0	0	3145	609	21	2		2	CDH7	18	63530201	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1971475	63530201	14547047	1714	138705											
ADNP2	22850	broad.mit.edu	37	chr18	77894245	77894245	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcccagggtgcccctGgaagcctcactcattccccc	10	18	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77894245	T	T	77894245	4	4	168	1	0	0	0	0	0	1	0	0	324	1349	47	2	959	2	ADNP2	18	77894245	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	14364044	77894245	183003	1715	138706											
PARD6G	84552	broad.mit.edu	37	chr18	77960844	77960844	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagagacggggtggggggaGgggcattaataaataccaga	17	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77960844	A	A	77960844	1	1	168	0	1	0	0	0	0	0	0	0	11541	1015	35	4		4	PARD6G	18	77960844	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	66599	77960844	116404	1716	138707											
AZU1	566	broad.mit.edu	37	chr19	828484	828484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcttggtaggtgaggaGgggaggggattgcaaaagga	22	2	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	828484	T	T	828484	1	4	168	0	1	0	0	0	0	0	0	0	1248	1015	35	2		2	AZU1	19	828484	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08		828484	58300499	1717	138708											
MED16	10025	broad.mit.edu	37	chr19	886165	886165	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcgacggtgagaacttgaCtcgggagaacttctccccga	13	11	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	886165	T	T	886165	3	4	168	1	0	0	0	0	1	0	0	0	9527	565	20	4	2197	4	MED16	19	886165	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	57681	886165	58242818	1718	138709											
EFNA2	1943	broad.mit.edu	37	chr19	1295739	1295739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcggcttcaagcgctgGgagtgcaaccggcccgcggc	16	15	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1295739	T	T	1295739	3	4	168	1	0	0	0	0	1	0	0	0	4991	1241	43	2	342	2	EFNA2	19	1295739	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	409574	1295739	57833244	1719	138710											
REXO1	57455	broad.mit.edu	37	chr19	1825947	1825947	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcttccttggggggctaaGacacatgtccgtccgtcagc	11	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1825947	A	A	1825947	1	1	168	0	1	0	0	0	0	0	0	0	13349	957	33	4		4	REXO1	19	1825947	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	530208	1825947	57303036	1720	138711											
C19orf36	113177	broad.mit.edu	37	chr19	2099252	2099252	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcagcctcgtctccccgcAgcctggtatcgccagcctta	10	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2099252	C	C	2099252	5	2	168	1	0	0	0	0	0	0	1	0	1940	202	7	5	645	5	C19orf36	19	2099252	Splice_Site	SNP	A	TCGA-50-6590-01A-12D-1855-08	273305	2099252	57029731	1721	138712											
KDM4B	23030	broad.mit.edu	37	chr19	5047745	5047745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggagggagtcaatcccGggtacacggctgggcgccgt	17	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5047745	T	T	5047745	1	4	168	0	1	0	0	0	0	0	0	0	8199	1131	39	1		1	KDM4B	19	5047745	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2948493	5047745	54081238	1722	138713											
SAFB	6294	broad.mit.edu	37	chr19	5654557	5654557	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaattactaagcttcatttGaaaaaagcttttgtcggccg	9	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5654557	C	C	5654557	1	2	168	0	1	0	0	0	0	0	0	0	13917	1305	45	4		4	SAFB	19	5654557	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	606812	5654557	53474426	1723	138714											
LONP1	9361	broad.mit.edu	37	chr19	5711898	5711899	+	Missense_Mutation	DNP	CG	AC	AC													cagctccgccgggtgcctggCgctcagctcgtcctccgcct							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	5711899	AC	AC	5711898	3	1	168	1	0	0	0	0	1	0	0	0	8979	768	27	3	2185	3	LONP1	19	5711898	Missense_Mutation	DNP	CG	TCGA-50-6590-01A-12D-1855-08	57341	5711898	53417085	1724	138715											
DENND1C	79958	broad.mit.edu	37	chr19	6475669	6475669	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcatctggggatgtagagGaagggggaaccctcacgtcc	17	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6475669	T	T	6475669	1	4	168	0	1	0	0	0	0	0	0	0	4468	1189	41	3		3	DENND1C	19	6475669	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	763771	6475669	52653314	1725	138716											
C3	718	broad.mit.edu	37	chr19	6686930	6686930	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctctatgagaaagaggatCagattctccggtcatgtggg	14	7	4	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6686930	A	A	6686930	1	1	168	0	1	0	0	0	0	0	0	0	2226	841	29	3		3	C3	19	6686930	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	211261	6686930	52442053	1726	138717											
EMR1	2015	broad.mit.edu	37	chr19	6928343	6928343	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacttattcccatcaaaagTtctcctttccaggccgggcg	7	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6928343	C	C	6928343	1	2	168	0	1	0	0	0	0	0	0	0	5146	1740	60	5		5	EMR1	19	6928343	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	241413	6928343	52200640	1727	138718											
LRRC8E	80131	broad.mit.edu	37	chr19	7965131	7965131	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggcccgtctggttgcccTgaacagcctcaagaagctgg	14	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7965131	C	C	7965131	3	2	168	1	0	0	0	0	1	0	0	0	9112	1580	55	5	1730	5	LRRC8E	19	7965131	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1036788	7965131	51163852	1728	138719											
HNRNPM	4670	broad.mit.edu	37	chr19	8530150	8530150	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatatcatttactgtgcaAgcatggtttgcgttgtactg	10	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8530150	T	T	8530150	1	4	168	0	1	0	0	0	0	0	0	0	7338	87	3	5		5	HNRNPM	19	8530150	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	565019	8530150	50598833	1729	138720											
MYO1F	4542	broad.mit.edu	37	chr19	8601354	8601354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgttctgatgaaggggatGgcgagggcgggggtggaggg	25	4	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8601354	T	T	8601354	1	4	168	0	1	0	0	0	0	0	0	0	10167	1363	47	2		2	MYO1F	19	8601354	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	71204	8601354	50527629	1730	138721											
MUC16	94025	broad.mit.edu	37	chr19	9006351	9006351	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaaggtctcacctgagcaAggtcagtctgcagccagaat	10	11	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9006351	T	T	9006351	3	4	168	1	0	0	0	0	1	0	0	0	10067	69	3	5	4016	5	MUC16	19	9006351	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	404997	9006351	50122632	1731	138722											
MUC16	94025	broad.mit.edu	37	chr19	9011253	9011253	+	Intron	DEL	C	-	-													atggccaggcagagagtatgCccccaagccagagattagag							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9011253	-	-	9011253	6	5	168	0	1	1	0	1	0	0	0	0	10067	754	26	0		0	MUC16	19	9011253	Intron	DEL	C	TCGA-50-6590-01A-12D-1855-08	4902	9011253	50117730	1732	138723											
MUC16	94025	broad.mit.edu	37	chr19	9018068	9018068	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaggaagtgcagcaaggaaGcagtgcaaagtcttttagag	13	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9018068	A	A	9018068	1	1	168	0	1	0	0	0	0	0	0	0	10067	986	34	4		4	MUC16	19	9018068	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	6815	9018068	50110915	1733	138724											
MUC16	94025	broad.mit.edu	37	chr19	9038471	9038471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgatgggtgagaggtaggGgaggggaagatggtagatcc	20	2	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9038471	T	T	9038471	1	4	168	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	9038471	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	20403	9038471	50090512	1734	138725											
OR7D4	125958	broad.mit.edu	37	chr19	9325354	9325354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacatgggggtgtggaggtGggagtcagagctgacggcca	20	6	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9325354	T	T	9325354	3	4	168	1	0	0	0	0	1	0	0	0	11314	1348	47	2	782	2	OR7D4	19	9325354	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	286883	9325354	49803629	1735	138726											
COL5A3	50509	broad.mit.edu	37	chr19	10078711	10078712	+	Frame_Shift_Ins	INS	-	G	G													gcatactcaccgccacacctINSgggggcccagggtggcccag							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10078712	G	G	10078711	7	5	168	1	0	1	1	0	0	0	0	0	3730	1567	55	0	910	0	COL5A3	19	10078711	Frame_Shift_Ins	INS	-	TCGA-50-6590-01A-12D-1855-08	753357	10078711	49050272	1736	138727											
COL5A3	50509	broad.mit.edu	37	chr19	10090436	10090436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccactgcactctagccCaggtgacagagtgagactct	10	14	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10090436	A	A	10090436	1	1	168	0	1	0	0	0	0	0	0	0	3730	609	21	2		2	COL5A3	19	10090436	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	11725	10090436	49038547	1737	138728											
S1PR2	9294	broad.mit.edu	37	chr19	10335474	10335474	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgacgatgaaggccgaGgccacctggcgggaggtcgt	18	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10335474	T	T	10335474	2	4	168	1	0	0	0	0	0	0	0	1	13905	987	35	2		2	S1PR2	19	10335474	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	245038	10335474	48793509	1738	138729											
ZNF440	126070	broad.mit.edu	37	chr19	11943358	11943358	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaatacactctggagaaaGacgttataaatgtaagatat	8	4	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11943358	A	A	11943358	3	1	168	1	0	0	0	0	1	0	0	0	18040	942	33	4	1381	4	ZNF440	19	11943358	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1607884	11943358	47185625	1739	138730											
ZNF440	126070	broad.mit.edu	37	chr19	11943498	11943498	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtagttccagttccttttGatatcatgaaaggactcaca	7	9	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11943498	C	C	11943498	3	2	168	1	0	0	0	0	1	0	0	0	18040	1290	45	4	1521	4	ZNF440	19	11943498	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	140	11943498	47185485	1740	138731											
ZNF763	284390	broad.mit.edu	37	chr19	12088822	12088822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttcaaacaattcagccaGggcagaaagcctacaccttg	7	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12088822	T	T	12088822	1	4	168	0	1	0	0	0	0	0	0	0	18266	1015	35	2		2	ZNF763	19	12088822	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	145324	12088822	47040161	1741	138732											
ZNF136	7695	broad.mit.edu	37	chr19	12273958	12273958	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggagtctctgtggcgcGgtttcctgtacctgccttgg	14	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12273958	T	T	12273958	1	4	168	0	1	0	0	0	0	0	0	0	17852	1131	39	1		1	ZNF136	19	12273958	5'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	185136	12273958	46855025	1742	138733											
DHPS	1725	broad.mit.edu	37	chr19	12790352	12790352	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcttagaaggcgtccacttTacaccctaggagaggatgtg	11	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12790352	C	C	12790352	2	2	168	1	0	0	0	0	0	0	0	1	4525	1741	61	5		5	DHPS	19	12790352	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	516394	12790352	46338631	1743	138734											
TNPO2	30000	broad.mit.edu	37	chr19	12825812	12825812	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggctccctgacccctGccaccggccccctgcctgcc	12	21	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12825812	A	A	12825812	1	1	168	0	1	0	0	0	0	0	0	0	16459	1334	46	4		4	TNPO2	19	12825812	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	35460	12825812	46303171	1744	138735											
TNPO2	30000	broad.mit.edu	37	chr19	12825904	12825904	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatgagcctgtcaatccgcActtccagaagcatcaccagg	10	13	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12825904	T	T	12825904	3	4	168	1	0	0	0	0	1	0	0	0	16459	159	6	5	2033	5	TNPO2	19	12825904	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	92	12825904	46303079	1745	138736											
ZSWIM4	65249	broad.mit.edu	37	chr19	13939467	13939467	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctaccttgcaggtgatgcgGatgactctgaacgtaatgac	11	10	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13939467	A	A	13939467	2	1	168	1	0	0	0	0	0	0	0	1	18372	1161	41	4		4	ZSWIM4	19	13939467	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1113563	13939467	45189516	1746	138737											
NOTCH3	4854	broad.mit.edu	37	chr19	15299958	15299958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctgcgtgttcacgcacCtgcccaagtgctcgcagggg	13	15	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15299958	A	A	15299958	3	1	168	1	0	0	0	0	1	0	0	0	10645	681	24	2	5849	2	NOTCH3	19	15299958	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1360491	15299958	43829025	1747	138738											
BRD4	23476	broad.mit.edu	37	chr19	15354287	15354287	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatggctgctggggtagtgCgttgtgcaaagctggaagaa	17	5	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15354287	T	T	15354287	3	4	168	1	0	0	0	0	1	0	0	0	1513	768	27	4	1523	4	BRD4	19	15354287	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	54329	15354287	43774696	1748	138739											
UNC13A	23025	broad.mit.edu	37	chr19	17738480	17738480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcattttctcatctgaccCagggaaagggatcccaaggg	13	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17738480	A	A	17738480	1	1	168	0	1	0	0	0	0	0	0	0	17110	609	21	2		2	UNC13A	19	17738480	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2384193	17738480	41390503	1749	138740											
GMIP	51291	broad.mit.edu	37	chr19	19745301	19745301	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcgcgtttcaaggctcaGggacccatgcacacctgaac	12	13	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19745301	A	A	19745301	1	1	168	0	1	0	0	0	0	0	0	0	6555	1015	35	4		4	GMIP	19	19745301	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2006821	19745301	39383682	1750	138741											
ZNF737	100129842	broad.mit.edu	37	chr19	20727634	20727634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgagttgaaggctttgcCacattcttcacatttgtagg	11	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20727634	A	A	20727634	3	1	168	1	0	0	0	0	1	0	0	0	18255	594	21	2	239	2	ZNF737	19	20727634	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	982333	20727634	38401349	1751	138742											
ZNF208	7757	broad.mit.edu	37	chr19	22154078	22154078	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccacattcttcacatttgTagggtttctctccagtatga	7	10	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22154078	C	C	22154078	3	2	168	1	0	0	0	0	1	0	0	0	17892	1638	57	5	88	5	ZNF208	19	22154078	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	1426444	22154078	36974905	1752	138743											
ZNF257	113835	broad.mit.edu	37	chr19	22271616	22271616	+	Missense_Mutation	SNP	G	A	A													gtgtggcaaagcttttaaccGgtcttcacaccttactcaac							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22271616	A	A	22271616	3	1	168	1	0	0	0	0	1	0	0	0	17926	1116	39	4	1078	4	ZNF257	19	22271616	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	117538	22271616	36857367	1753	138744	596	2									
ZNF257	113835	broad.mit.edu	37	chr19	22271620	22271620	+	Silent	SNP	T	G	G													ggcaaagcttttaaccggtcTtcacaccttactcaacataa							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22271620	G	G	22271620	2	3	168	1	0	0	0	0	0	0	0	1	17926	1596	56	5		5	ZNF257	19	22271620	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	4	22271620	36857363	1754	138745	596	2									
ZNF675	171392	broad.mit.edu	37	chr19	23836222	23836222	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacatttgtagggtttctCcccagtatgaattcttttat	6	8	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23836222	A	A	23836222	4	1	168	1	0	0	0	0	0	1	0	0	18209	864	30	3	197	3	ZNF675	19	23836222	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1564602	23836222	35292761	1755	138746											
TSHZ3	57616	broad.mit.edu	37	chr19	31770504	31770504	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcatggcaggaaaactcGgcggccggggagttctggta	15	8	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31770504	T	T	31770504	2	4	168	1	0	0	0	0	0	0	0	1	16750	1103	39	1		1	TSHZ3	19	31770504	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	7934282	31770504	27358479	1756	138747											
KIAA0355	9710	broad.mit.edu	37	chr19	34791804	34791804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcctgagatcgccaagatGctaatggaacttagtgctgg	12	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34791804	T	T	34791804	3	4	168	1	0	0	0	0	1	0	0	0	8240	1319	46	3	428	3	KIAA0355	19	34791804	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3021300	34791804	24337179	1757	138748											
ATP4A	495	broad.mit.edu	37	chr19	36041670	36041670	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggccaagtgttgaggatcAaaggtgggtgcagctgctca	16	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36041670	G	G	36041670	1	3	168	0	1	0	0	0	0	0	0	0	1149	145	5	5		5	ATP4A	19	36041670	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	1249866	36041670	23087313	1758	138749											
ATP4A	495	broad.mit.edu	37	chr19	36054497	36054497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccctgtccccactgcaccCcggacccctgggccccactc	7	24	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36054497	A	A	36054497	1	1	168	0	1	0	0	0	0	0	0	0	1149	638	22	2		2	ATP4A	19	36054497	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	12827	36054497	23074486	1759	138750											
COX6B1	1340	broad.mit.edu	37	chr19	36145555	36145555	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccagcgtgtgtaccagtcCctctgccccacatcctgggt	9	16	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36145555	A	A	36145555	2	1	168	1	0	0	0	0	0	0	0	1	3808	610	22	2		2	COX6B1	19	36145555	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	91058	36145555	22983428	1760	138751											
KIRREL2	84063	broad.mit.edu	37	chr19	36348297	36348297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacctggtggtgctgctgGgggaggaagcccggctgccg	20	10	0	0	rs147522074	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36348297	T	T	36348297	3	4	168	1	0	0	0	0	1	0	0	0	8396	1232	43	2	118	2	KIRREL2	19	36348297	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	202742	36348297	22780686	1761	138752											
NFKBID	84807	broad.mit.edu	37	chr19	36386965	36386965	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgtgctcagcacccgggGacagaggtcggaagggcgca	17	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36386965	A	A	36386965	3	1	168	1	0	0	0	0	1	0	0	0	10474	1174	41	4	434	4	NFKBID	19	36386965	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	38668	36386965	22742018	1762	138753											
ZNF382	84911	broad.mit.edu	37	chr19	37117543	37117543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaataaagatggaattgcCttcatagaaaagtcaagcct	7	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37117543	A	A	37117543	2	1	168	1	0	0	0	0	0	0	0	1	17999	668	24	2		2	ZNF382	19	37117543	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	730578	37117543	22011440	1763	138754											
ZNF461	92283	broad.mit.edu	37	chr19	37155483	37155483	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcccacctgggagacagcGaggctatgtctcaaaaaaaa	9	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37155483	A	A	37155483	1	1	168	0	1	0	0	0	0	0	0	0	18052	1073	37	4		4	ZNF461	19	37155483	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	37940	37155483	21973500	1764	138755											
FAM98C	147965	broad.mit.edu	37	chr19	38899434	38899434	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgggggggccgcccaaatgAgctggagcctcccatgccca	14	16	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38899434	T	T	38899434	3	4	168	1	0	0	0	0	1	0	0	0	5715	304	11	5	992	5	FAM98C	19	38899434	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	1743951	38899434	20229549	1765	138756											
RYR1	6261	broad.mit.edu	37	chr19	38993389	38993389	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcggggcaggcttcagGgtggggcaggggcaggggca	24	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38993389	T	T	38993389	1	4	168	0	1	0	0	0	0	0	0	0	13879	1247	43	2		2	RYR1	19	38993389	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	93955	38993389	20135594	1766	138757											
LGALS4	3960	broad.mit.edu	37	chr19	39294168	39294168	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccccaagccataccgggttGaaggttgggggtccttccat	12	12	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39294168	C	C	39294168	3	2	168	1	0	0	0	0	1	0	0	0	8817	1281	45	4	423	4	LGALS4	19	39294168	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	300779	39294168	19834815	1767	138758											
IL28A	282616	broad.mit.edu	37	chr19	39760495	39760495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagagggactgaggtctGgggagccactgggagcccag	19	8	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39760495	T	T	39760495	1	4	168	0	1	0	0	0	0	0	0	0	7752	1363	47	2		2	IL28A	19	39760495	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	466327	39760495	19368488	1768	138759											
ZNF780B	163131	broad.mit.edu	37	chr19	40541949	40541949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgatatggttttacacCagcatgaatactttgatgct	7	7	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40541949	A	A	40541949	3	1	168	1	0	0	0	0	1	0	0	0	18282	594	21	2	1688	2	ZNF780B	19	40541949	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	781454	40541949	18587034	1769	138760											
ADCK4	79934	broad.mit.edu	37	chr19	41206327	41206327	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttaaccacggctgggaccCggaagaaggggtcatttgcc	13	12	1	1	rs147037877		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41206327	A	A	41206327	3	1	168	1	0	0	0	0	1	0	0	0	290	652	23	1	731	1	ADCK4	19	41206327	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	664378	41206327	17922656	1770	138761											
AXL	558	broad.mit.edu	37	chr19	41744609	41744609	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttgtgaaggttgggtagTacacaattgctctatgccta	12	6	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41744609	A	A	41744609	1	1	168	0	1	0	0	0	0	0	0	0	1243	1653	57	5		5	AXL	19	41744609	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	538282	41744609	17384374	1771	138762											
MEGF8	1954	broad.mit.edu	37	chr19	42840851	42840851	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttggaggggacatagagtCagtcatggccagtctcatcc	13	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42840851	T	T	42840851	1	4	168	0	1	0	0	0	0	0	0	0	9556	841	29	4		4	MEGF8	19	42840851	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1096242	42840851	16288132	1772	138763											
PSG3	5671	broad.mit.edu	37	chr19	43233590	43233590	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaaggggatgctcctggtCtcttaaagggacacagtgac	15	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43233590	A	A	43233590	1	1	168	0	1	0	0	0	0	0	0	0	12762	928	32	3		3	PSG3	19	43233590	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	392739	43233590	15895393	1773	138764											
PSG6	5675	broad.mit.edu	37	chr19	43527565	43527565	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggtcctctccttgatcctCtcatgacagtgacatggaca	8	12	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43527565	A	A	43527565	1	1	168	0	1	0	0	0	0	0	0	0	12765	928	32	3		3	PSG6	19	43527565	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	293975	43527565	15601418	1774	138765											
PSG9	5678	broad.mit.edu	37	chr19	43762511	43762511	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaattgtccaaaaatactcTgccggtgggttagattccgt	9	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43762511	A	A	43762511	2	1	168	1	0	0	0	0	0	0	0	1	12768	1567	55	5		5	PSG9	19	43762511	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	234946	43762511	15366472	1775	138766											
ZNF234	10780	broad.mit.edu	37	chr19	44660544	44660544	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagtatttctcggttcccCagacaaggtgatttgtcctg	9	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44660544	A	A	44660544	2	1	168	1	0	0	0	0	0	0	0	1	17913	581	21	2		2	ZNF234	19	44660544	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	898033	44660544	14468439	1776	138767											
PVRL2	5819	broad.mit.edu	37	chr19	45375315	45375315	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttcaccttggtgccctcGggccgagcagatggtgtcac	13	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45375315	A	A	45375315	2	1	168	1	0	0	0	0	0	0	0	1	12948	1103	39	4		4	PVRL2	19	45375315	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	714771	45375315	13753668	1777	138768											
GIPR	2696	broad.mit.edu	37	chr19	46184982	46184982	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctctgagcgccatcgtctCacaggtgcagtcggagatcc	12	14	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46184982	T	T	46184982	1	4	168	0	1	0	0	0	0	0	0	0	6459	841	29	4		4	GIPR	19	46184982	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	809667	46184982	12944001	1778	138769											
SYMPK	8189	broad.mit.edu	37	chr19	46331047	46331047	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcagacccctcagggcaGggccctgtcccctgccccgg	11	20	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46331047	A	A	46331047	1	1	168	0	1	0	0	0	0	0	0	0	15558	1015	35	4		4	SYMPK	19	46331047	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	146065	46331047	12797936	1779	138770											
PTGIR	5739	broad.mit.edu	37	chr19	47124657	47124657	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccccaagccgacaaaggCacgcagctcccctcctttcc	7	20	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47124657	A	A	47124657	2	1	168	1	0	0	0	0	0	0	0	1	12857	697	25	3		3	PTGIR	19	47124657	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	793610	47124657	12004326	1780	138771											
RASIP1	54922	broad.mit.edu	37	chr19	49227757	49227757	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaccattgatagaaaggcCggccttgacctgtgggtgtt	15	8	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49227757	T	T	49227757	3	4	168	1	0	0	0	0	1	0	0	0	13186	652	23	4	522	4	RASIP1	19	49227757	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2103100	49227757	9901226	1781	138772											
IZUMO1	284359	broad.mit.edu	37	chr19	49245225	49245225	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccaagctcaaggggtcactGaggcctgaggaattcagggg	15	10	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49245225	A	A	49245225	1	1	168	0	1	0	0	0	0	0	0	0	8003	1305	45	4		4	IZUMO1	19	49245225	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	17468	49245225	9883758	1782	138773											
TEAD2	8463	broad.mit.edu	37	chr19	49860457	49860457	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctctttctgggtctcggtCccccacccccagtctctgtc	7	19	4	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49860457	A	A	49860457	1	1	168	0	1	0	0	0	0	0	0	0	15861	870	30	3		3	TEAD2	19	49860457	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	615232	49860457	9268526	1783	138774											
CPT1C	126129	broad.mit.edu	37	chr19	50208458	50208458	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggcagctcacagcccaCggtttcctgcagactttgct	11	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50208458	T	T	50208458	1	4	168	0	1	0	0	0	0	0	0	0	3865	551	19	4		4	CPT1C	19	50208458	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	348001	50208458	8920525	1784	138775											
SIGLEC12	89858	broad.mit.edu	37	chr19	52003553	52003553	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgacagtaggtcctgggaCgctgtggagaaacgagggtc	16	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52003553	G	G	52003553	2	3	168	1	0	0	0	0	0	0	0	1	14421	550	19	4		4	SIGLEC12	19	52003553	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1795095	52003553	7125430	1785	138776											
SIGLEC6	946	broad.mit.edu	37	chr19	52031089	52031089	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctagtcttcactctgaggGaacagccctaagcctttcag	8	12	5	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52031089	A	A	52031089	1	1	168	0	1	0	0	0	0	0	0	0	14425	1189	41	4		4	SIGLEC6	19	52031089	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	27536	52031089	7097894	1786	138777											
SIGLEC6	946	broad.mit.edu	37	chr19	52033242	52033242	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggattttgaaggctttggGgagagaggtgtagagagtta	17	2	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52033242	A	A	52033242	1	1	168	0	1	0	0	0	0	0	0	0	14425	1247	43	4		4	SIGLEC6	19	52033242	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2153	52033242	7095741	1787	138778											
ZNF578	147660	broad.mit.edu	37	chr19	52994605	52994605	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaatgcatgatgaaaaaGgtgggaagattacttgagcc	11	6	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52994605	T	T	52994605	1	4	168	1	0	0	0	0	0	0	0	0	18137	1015	35	2		2	ZNF578	19	52994605	Translation_Start_Site	SNP	G	TCGA-50-6590-01A-12D-1855-08	961363	52994605	6134378	1788	138779											
ZNF321	399669	broad.mit.edu	37	chr19	53432347	53432347	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accaattttccattcaggctGaaatatgtggagttcaggca	9	8	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53432347	C	C	53432347	3	2	168	1	0	0	0	0	1	0	0	0	17966	1299	45	4	194	4	ZNF321	19	53432347	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	437742	53432347	5696636	1789	138780											
RPS9	6203	broad.mit.edu	37	chr19	54711356	54711356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgcgctctccctacggGggtggccgcccgggccgcgt	15	17	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54711356	T	T	54711356	2	4	168	1	0	0	0	0	0	0	0	1	13773	1219	43	2		2	RPS9	19	54711356	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1279009	54711356	4417627	1790	138781											
LILRB5	10990	broad.mit.edu	37	chr19	54756398	54756398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggccccgcagcccctgcagGacggtagaaatgggctggac	15	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54756398	T	T	54756398	3	4	168	1	0	0	0	0	1	0	0	0	8866	1174	41	3	302	3	LILRB5	19	54756398	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	45042	54756398	4372585	1791	138782											
LILRB1	10859	broad.mit.edu	37	chr19	55142760	55142760	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggacccacgtgcaggcaggtGagtctgtccccagctcttcc	12	15	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55142760	T	T	55142760	1	4	168	0	1	0	0	0	0	0	0	0	8862	1305	45	3		3	LILRB1	19	55142760	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	386362	55142760	3986223	1792	138783											
KIR3DL1	3811	broad.mit.edu	37	chr19	55341702	55341702	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacttccaaatgctaagcCcagatccaaagttgtctcct	7	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55341702	T	T	55341702	3	4	168	1	0	0	0	0	1	0	0	0	8391	623	22	4	1341	4	KIR3DL1	19	55341702	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	198942	55341702	3787281	1793	138784											
NLRP7	199713	broad.mit.edu	37	chr19	55449458	55449458	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgggttacgtggtcacaaaGaatccgcacagaagagtcac	11	10	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55449458	C	C	55449458	3	2	168	1	0	0	0	0	1	0	0	0	10577	942	33	4	1058	4	NLRP7	19	55449458	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	107756	55449458	3679525	1794	138785											
NLRP2	55655	broad.mit.edu	37	chr19	55494845	55494845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgcgacataagttgtaaGggtggacattcaacggtgac	13	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55494845	T	T	55494845	3	4	168	1	0	0	0	0	1	0	0	0	10572	991	35	2	1797	2	NLRP2	19	55494845	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	45387	55494845	3634138	1795	138786											
HSPBP1	23640	broad.mit.edu	37	chr19	55776856	55776856	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggctcactcaggagcctGgcaagtcgctgccccacaat	10	16	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55776856	A	A	55776856	1	1	168	0	1	0	0	0	0	0	0	0	7496	1363	47	4		4	HSPBP1	19	55776856	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	282011	55776856	3352127	1796	138787											
NLRP8	126205	broad.mit.edu	37	chr19	56467478	56467478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctctgagtaagtgcttcGgtccctccttgggtagcccg	13	12	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56467478	T	T	56467478	1	4	168	0	1	0	0	0	0	0	0	0	10578	1131	39	1		1	NLRP8	19	56467478	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	690622	56467478	2661505	1797	138788											
NLRP8	126205	broad.mit.edu	37	chr19	56477780	56477780	+	Intron	SNP	G	T	T													ggggggttagagtgggaaccGgggtacccggatggtctttt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56477780	T	T	56477780	1	4	168	0	1	0	0	0	0	0	0	0	10578	1131	39	1		1	NLRP8	19	56477780	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	10302	56477780	2651203	1798	138789	597	2									
NLRP8	126205	broad.mit.edu	37	chr19	56477782	56477782	+	Intron	SNP	G	T	T													ggggttagagtgggaaccggGgtacccggatggtcttttca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56477782	T	T	56477782	1	4	168	0	1	0	0	0	0	0	0	0	10578	1247	43	2		2	NLRP8	19	56477782	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2	56477782	2651201	1799	138790	597	2									
NLRP8	126205	broad.mit.edu	37	chr19	56481798	56481798	+	Intron	DEL	C	-	-													gccggaaagttggaaataatCccccgagtctctgctgtgaa					rs78902419	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56481798	-	-	56481798	6	5	168	0	1	1	0	1	0	0	0	0	10578	870	30	0		0	NLRP8	19	56481798	Intron	DEL	C	TCGA-50-6590-01A-12D-1855-08	4016	56481798	2647185	1800	138791											
NLRP5	126206	broad.mit.edu	37	chr19	56538929	56538929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatccacttgctccttgagCgcgggattggtgagcatcag	13	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56538929	A	A	56538929	3	1	168	1	0	0	0	0	1	0	0	0	10575	768	27	3	1356	3	NLRP5	19	56538929	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	57131	56538929	2590054	1801	138792											
DUXA	503835	broad.mit.edu	37	chr19	57665747	57665747	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacagatttggggtccagtTgatattatcaagtacactga	10	6	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57665747	A	A	57665747	1	1	168	0	1	0	0	0	0	0	0	0	4874	1827	63	5		5	DUXA	19	57665747	3'UTR	SNP	T	TCGA-50-6590-01A-12D-1855-08	1126818	57665747	1463236	1802	138793											
DUXA	503835	broad.mit.edu	37	chr19	57666721	57666721	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctggagaagtaatctagatCttcgattttggaaccaaatc	8	7	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57666721	A	A	57666721	3	1	168	1	0	0	0	0	1	0	0	0	4874	913	32	3	164	3	DUXA	19	57666721	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	974	57666721	1462262	1803	138794											
ANGPT4	51378	broad.mit.edu	37	chr20	870864	870864	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accctctgttacctgagcctCcatgtcggtcagcttgcgga	10	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	870864	A	A	870864	4	1	168	1	0	0	0	0	0	1	0	0	612	864	30	3	1086	3	ANGPT4	20	870864	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08		870864	62154656	1804	138795											
SIRPG	55423	broad.mit.edu	37	chr20	1630065	1630065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccacttctgaaaaggaGcacaaagcaatcattttttc	6	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1630065	T	T	1630065	1	4	168	0	1	0	0	0	0	0	0	0	14449	986	34	3		3	SIRPG	20	1630065	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	759201	1630065	61395455	1805	138796											
TGM6	343641	broad.mit.edu	37	chr20	2377251	2377251	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagcacatacgagcccAgggctggaactacgggcagg	16	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2377251	T	T	2377251	3	4	168	1	0	0	0	0	1	0	0	0	15957	188	7	5	538	5	TGM6	20	2377251	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	747186	2377251	60648269	1806	138797											
TGM6	343641	broad.mit.edu	37	chr20	2411686	2411686	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatcgagtaagtgccagcCtggggggctggcagggaatg	18	8	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2411686	T	T	2411686	1	4	168	0	1	0	0	0	0	0	0	0	15957	696	24	4		4	TGM6	20	2411686	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	34435	2411686	60613834	1807	138798											
ZNF343	79175	broad.mit.edu	37	chr20	2464766	2464766	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgatgagggttgatcTatctttaaagcttcgcccac	10	9	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2464766	C	C	2464766	3	2	168	1	0	0	0	0	1	0	0	0	17984	1530	53	5	962	5	ZNF343	20	2464766	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	53080	2464766	60560754	1808	138799											
TMC2	117532	broad.mit.edu	37	chr20	2616632	2616632	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccgagctaatgcccagctGaggaagaaaatccaagtggt	11	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2616632	T	T	2616632	2	4	168	1	0	0	0	0	0	0	0	1	16108	1277	45	3		3	TMC2	20	2616632	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	151866	2616632	60408888	1809	138800											
FAM113A	64773	broad.mit.edu	37	chr20	2816230	2816230	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattctccgcacatggtaggGgctgttaggaacatagcgtg	13	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2816230	C	C	2816230	3	2	168	1	0	0	0	0	1	0	0	0	5447	1232	43	4	125	4	FAM113A	20	2816230	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	199598	2816230	60209290	1810	138801											
C20orf29	55317	broad.mit.edu	37	chr20	3802911	3802911	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccgagagggacaggcttctCcggaaggaacagattttagc	14	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3802911	T	T	3802911	2	4	168	1	0	0	0	0	0	0	0	1	2130	842	30	4		4	C20orf29	20	3802911	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	986681	3802911	59222609	1811	138802											
CHGB	1114	broad.mit.edu	37	chr20	5897521	5897521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgccttgtcgaagtccaGcgctccacccatcacccctg	7	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5897521	T	T	5897521	3	4	168	1	0	0	0	0	1	0	0	0	3370	971	34	3	156	3	CHGB	20	5897521	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2094610	5897521	57127999	1812	138803											
TRMT6	51605	broad.mit.edu	37	chr20	5923323	5923323	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagactgtccactttgttGagagggaattcataaagacc	10	7	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5923323	C	C	5923323	2	2	168	1	0	0	0	0	0	0	0	1	16693	1277	45	4		4	TRMT6	20	5923323	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	25802	5923323	57102197	1813	138804											
PLCB1	23236	broad.mit.edu	37	chr20	8770175	8770175	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcttttagggagaagacaGagatgatccggtcatatatc	11	6	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8770175	T	T	8770175	4	4	168	1	0	0	0	0	0	1	0	0	12122	943	33	3	3407	3	PLCB1	20	8770175	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2846852	8770175	54255345	1814	138805											
PAK7	57144	broad.mit.edu	37	chr20	9524994	9524994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccccagtcctgccacgCctatgactgtgaccccctta	7	18	0	2	rs113012559		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9524994	A	A	9524994	1	1	168	0	1	0	0	0	0	0	0	0	11499	754	26	3		3	PAK7	20	9524994	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	754819	9524994	53500526	1815	138806											
SPTLC3	55304	broad.mit.edu	37	chr20	12989924	12989924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttcacacccatggctaaCcctggaggtggtgctgtttg	11	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12989924	A	A	12989924	3	1	168	1	0	0	0	0	1	0	0	0	15243	506	18	3	11	3	SPTLC3	20	12989924	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3464930	12989924	50035596	1816	138807											
KIF16B	55614	broad.mit.edu	37	chr20	16493399	16493399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaccttatccatttccagCacctaaatgcaggccaacca	5	14	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16493399	A	A	16493399	1	1	168	0	1	0	0	0	0	0	0	0	8348	725	25	3		3	KIF16B	20	16493399	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3503475	16493399	46532121	1817	138808											
RRBP1	6238	broad.mit.edu	37	chr20	17617167	17617167	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctctggctccctccgtccTggacctggactgggtcctgt	11	16	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17617167	C	C	17617167	1	2	168	0	1	0	0	0	0	0	0	0	13789	1595	55	5		5	RRBP1	20	17617167	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	1123768	17617167	45408353	1818	138809											
RBBP9	10741	broad.mit.edu	37	chr20	18471027	18471027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttgctcagatttctacCtttggacttaccacttgcac	7	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18471027	A	A	18471027	1	1	168	0	1	0	0	0	0	0	0	0	13214	696	24	2		2	RBBP9	20	18471027	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	853860	18471027	44554493	1819	138810											
FOXA2	3170	broad.mit.edu	37	chr20	22563800	22563800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaggagtagccctgcggaCagagccccgggagggaggcg	20	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22563800	A	A	22563800	1	1	168	0	1	0	0	0	0	0	0	0	6048	493	17	3		3	FOXA2	20	22563800	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4092773	22563800	40461720	1820	138811											
CST8	10047	broad.mit.edu	37	chr20	23473599	23473599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgctaaccaacaggtcaCaaatcttctggaatacctta	5	10	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23473599	A	A	23473599	3	1	168	1	0	0	0	0	1	0	0	0	4012	478	17	3	242	3	CST8	20	23473599	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	909799	23473599	39551921	1821	138812											
C20orf3	57136	broad.mit.edu	37	chr20	24959487	24959487	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcttcgtatttggatgcaGaacaccaagcaagagcgggg	13	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24959487	C	C	24959487	3	2	168	1	0	0	0	0	1	0	0	0	2131	933	33	4	1034	4	C20orf3	20	24959487	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1485888	24959487	38066033	1822	138813											
DEFB116	245930	broad.mit.edu	37	chr20	29891349	29891349	+	Intron	DEL	G	-	-													acacgccctaagactattaaGggcacaagatctggaatcaa							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29891349	-	-	29891349	6	5	168	0	1	1	0	1	0	0	0	0	4444	1015	35	0		0	DEFB116	20	29891349	Intron	DEL	G	TCGA-50-6590-01A-12D-1855-08	4931862	29891349	33134171	1823	138814											
DEFB116	245930	broad.mit.edu	37	chr20	29896313	29896313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaacctttgagagaggcCtgagttacctggagtctttt	11	9	1	4	rs6121358		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29896313	A	A	29896313	1	1	168	0	1	0	0	0	0	0	0	0	4444	696	24	2		2	DEFB116	20	29896313	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4964	29896313	33129207	1824	138815											
DEFB118	117285	broad.mit.edu	37	chr20	29956330	29956330	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggataagctcttagatatcCggctggttctgtgcccatcc	10	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29956330	A	A	29956330	1	1	168	0	1	0	0	0	0	0	0	0	4445	667	23	1		1	DEFB118	20	29956330	5'Flank	SNP	C	TCGA-50-6590-01A-12D-1855-08	60017	29956330	33069190	1825	138816											
REM1	28954	broad.mit.edu	37	chr20	30070119	30070120	+	Frame_Shift_Ins	INS	-	C	C													ggagccaggagtcatgcctgINScaggggggcagtgcctatgt							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30070120	C	C	30070119	7	5	168	1	0	1	1	0	0	0	0	0	13330	1306	46	0	463	0	REM1	20	30070119	Frame_Shift_Ins	INS	-	TCGA-50-6590-01A-12D-1855-08	113789	30070119	32955401	1826	138817											
HM13	81502	broad.mit.edu	37	chr20	30136875	30136875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaaggacctggtgtgcctGggcctgagcagcatcgttgg	15	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30136875	T	T	30136875	2	4	168	1	0	0	0	0	0	0	0	1	7284	1335	47	2		2	HM13	20	30136875	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	66756	30136875	32888645	1827	138818											
MYLK2	85366	broad.mit.edu	37	chr20	30409594	30409594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggccagggggagggaaGggggctgtcagtcccaagtc	20	9	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30409594	T	T	30409594	1	4	168	0	1	0	0	0	0	0	0	0	10151	1015	35	2		2	MYLK2	20	30409594	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	272719	30409594	32615926	1828	138819											
PDRG1	81572	broad.mit.edu	37	chr20	30533722	30533722	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagatgatccatcagcacgtCgggcctcctgctggctctgg	12	13	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30533722	A	A	30533722	1	1	168	0	1	0	0	0	0	0	0	0	11784	899	31	3		3	PDRG1	20	30533722	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	124128	30533722	32491798	1829	138820											
TM9SF4	9777	broad.mit.edu	37	chr20	30743012	30743012	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgcctcccctacccttcCagcccctccccagcaagcga	6	21	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30743012	T	T	30743012	1	4	168	0	1	0	0	0	0	0	0	0	16103	609	21	4		4	TM9SF4	20	30743012	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	209290	30743012	32282508	1830	138821											
GGT7	2686	broad.mit.edu	37	chr20	33451081	33451081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaccccactccccactccCcagtttcctccccctcccca	1	25	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33451081	A	A	33451081	1	1	168	0	1	0	0	0	0	0	0	0	6428	638	22	2		2	GGT7	20	33451081	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2708069	33451081	29574439	1831	138822											
MYH7B	57644	broad.mit.edu	37	chr20	33577898	33577898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccatcttccagaagtcaCagaataggctcctggcgact	8	14	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33577898	A	A	33577898	3	1	168	1	0	0	0	0	1	0	0	0	10134	479	17	3	2049	3	MYH7B	20	33577898	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	126817	33577898	29447622	1832	138823											
EDEM2	55741	broad.mit.edu	37	chr20	33703449	33703449	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttcgacctgctccgtttGagagagtagaattccctcat	8	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33703449	C	C	33703449	2	2	168	1	0	0	0	0	0	0	0	1	4952	1277	45	4		4	EDEM2	20	33703449	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	125551	33703449	29322071	1833	138824											
EDEM2	55741	broad.mit.edu	37	chr20	33703557	33703557	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtgagcttctgtgttgaaGatgtaccccccagcccccag	12	13	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33703557	C	C	33703557	3	2	168	1	0	0	0	0	1	0	0	0	4952	932	33	4	324	4	EDEM2	20	33703557	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	108	33703557	29321963	1834	138825											
FAM83C	128876	broad.mit.edu	37	chr20	33876450	33876450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaagccatgtctctgcccCatggggtctctaaccccaga	8	16	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33876450	A	A	33876450	1	1	168	0	1	0	0	0	0	0	0	0	5688	609	21	2		2	FAM83C	20	33876450	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	172893	33876450	29149070	1835	138826											
C20orf118	140711	broad.mit.edu	37	chr20	35517646	35517646	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcaccaagactgtcctcttCtctctagtggccggtttggg	11	13	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35517646	G	G	35517646	1	3	168	0	1	0	0	0	0	0	0	0	2106	928	32	4		4	C20orf118	20	35517646	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1641196	35517646	27507874	1836	138827											
SRC	6714	broad.mit.edu	37	chr20	36014672	36014672	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggcatcagggcagcacaGtgcagagcccagggcagtgc	15	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36014672	A	A	36014672	1	1	168	0	1	0	0	0	0	0	0	0	15252	1044	36	4		4	SRC	20	36014672	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	497026	36014672	27010848	1837	138828											
CTNNBL1	56259	broad.mit.edu	37	chr20	36470800	36470800	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaatgcaggtggcggacaaGaagattgaaggggaaaaaca	15	5	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36470800	C	C	36470800	3	2	168	1	0	0	0	0	1	0	0	0	4052	933	33	4	1421	4	CTNNBL1	20	36470800	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	456128	36470800	26554720	1838	138829											
KIAA1755	85449	broad.mit.edu	37	chr20	36888960	36888960	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggcgcggggtctgtgGgtccgcgggtccgtctgtct	18	12	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36888960	T	T	36888960	1	4	168	0	1	0	0	0	0	0	0	0	8327	1247	43	2		2	KIAA1755	20	36888960	5'UTR	SNP	G	TCGA-50-6590-01A-12D-1855-08	418160	36888960	26136560	1839	138830											
BPI	671	broad.mit.edu	37	chr20	36948676	36948676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctggatgtacagatgaaGgtgaggctgacactgagaat	13	7	0	5			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36948676	T	T	36948676	3	4	168	1	0	0	0	0	1	0	0	0	1499	1014	35	2	794	2	BPI	20	36948676	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	59716	36948676	26076844	1840	138831											
DHX35	60625	broad.mit.edu	37	chr20	37619999	37619999	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtgggaatttacttgtAcacatgctggcaaagaggtt	11	6	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37619999	T	T	37619999	1	4	168	0	1	0	0	0	0	0	0	0	4548	406	14	5		5	DHX35	20	37619999	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	671323	37619999	25405521	1841	138832											
CHD6	84181	broad.mit.edu	37	chr20	40116400	40116400	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atttaacaaactgaagagctCctccacagagttctgcaagg	8	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40116400	T	T	40116400	3	4	168	1	0	0	0	0	1	0	0	0	3360	864	30	4	6337	4	CHD6	20	40116400	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2496401	40116400	22909120	1842	138833											
SLC12A5	57468	broad.mit.edu	37	chr20	44665331	44665331	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttggcccccacccaggccActgcggcccctaccccagcc	9	23	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44665331	T	T	44665331	1	4	168	0	1	0	0	0	0	0	0	0	14499	174	6	5		5	SLC12A5	20	44665331	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	4548931	44665331	18360189	1843	138834											
ARFGEF2	10564	broad.mit.edu	37	chr20	47648708	47648708	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataaatgatgaaaaggtatGaacaagtaaactctgaccaa	7	5	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47648708	C	C	47648708	1	2	168	0	1	0	0	0	0	0	0	0	855	1305	45	4		4	ARFGEF2	20	47648708	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2983377	47648708	15376812	1844	138835											
DDX27	55661	broad.mit.edu	37	chr20	47849974	47849974	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttctctgtggcgggtggCaggtgtgcccagagggggcc	19	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47849974	T	T	47849974	1	4	168	0	1	0	0	0	0	0	0	0	4387	725	25	4		4	DDX27	20	47849974	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	201266	47849974	15175546	1845	138836											
TSHZ2	128553	broad.mit.edu	37	chr20	51873136	51873136	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtttgctctgaggcattgcGattagcctggtgaggagctt	15	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51873136	T	T	51873136	1	4	168	0	1	0	0	0	0	0	0	0	16749	1073	37	3		3	TSHZ2	20	51873136	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	4023162	51873136	11152384	1846	138837											
MC3R	4159	broad.mit.edu	37	chr20	54824187	54824187	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaatgccctggagaccatCatgatcgccatcgtccacag	8	15	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54824187	G	G	54824187	3	3	168	1	0	0	0	0	1	0	0	0	9458	816	29	4	290	4	MC3R	20	54824187	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2951051	54824187	8201333	1847	138838											
AURKA	6790	broad.mit.edu	37	chr20	54948488	54948488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggagcatgtactgacCacccaaaatctgcaatttta	7	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54948488	A	A	54948488	3	1	168	1	0	0	0	0	1	0	0	0	1226	595	21	2	393	2	AURKA	20	54948488	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	124301	54948488	8077032	1848	138839											
PCK1	5105	broad.mit.edu	37	chr20	56140312	56140312	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagagagagagaaagagagaGaggagaacaaagcatgctaa	15	3	0	6			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56140312	C	C	56140312	1	2	168	0	1	0	0	0	0	0	0	0	11675	957	33	4		4	PCK1	20	56140312	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	1191824	56140312	6885208	1849	138840											
GNAS	2778	broad.mit.edu	37	chr20	57429020	57429020	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttgatggagaaggatttGgggacgacagcccacccccg	14	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57429020	A	A	57429020	3	1	168	1	0	0	0	0	1	0	0	0	6574	1348	47	4	1444	4	GNAS	20	57429020	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1288708	57429020	5596500	1850	138841											
GNAS	2778	broad.mit.edu	37	chr20	57485473	57485473	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgagtcgagcctgtcTttagtttcctctcttgttcc	9	11	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57485473	G	G	57485473	1	3	168	0	1	0	0	0	0	0	0	0	6574	1624	56	5		5	GNAS	20	57485473	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	56453	57485473	5540047	1851	138842											
ZNF831	128611	broad.mit.edu	37	chr20	57767460	57767460	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccgcgcgctggagccaggCcgtaggagggccccgggccc	17	16	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57767460	A	A	57767460	2	1	168	1	0	0	0	0	0	0	0	1	18314	726	26	3		3	ZNF831	20	57767460	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	281987	57767460	5258060	1852	138843											
CDH4	1002	broad.mit.edu	37	chr20	60427890	60427890	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctacgtcatcgacatgaaTgacaaccgccctgagttcat	7	12	3	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60427890	A	A	60427890	3	1	168	1	0	0	0	0	1	0	0	0	3142	1461	51	5	835	5	CDH4	20	60427890	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	2660430	60427890	2597630	1853	138844											
LAMA5	3911	broad.mit.edu	37	chr20	60885533	60885534	+	Missense_Mutation	DNP	GA	AT	AT													cccgcctccagggggcccaaGatgcagggtgtgacccctgc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	60885534	AT	AT	60885533	3	1	168	1	0	0	0	0	1	0	0	0	8681	932	33	4	565	4	LAMA5	20	60885533	Missense_Mutation	DNP	GA	TCGA-50-6590-01A-12D-1855-08	457643	60885533	2139987	1854	138845											
LAMA5	3911	broad.mit.edu	37	chr20	60885969	60885969	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctcaccttgtgccagcGgccaggccgggagcgctggc	16	16	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60885969	A	A	60885969	3	1	168	1	0	0	0	0	1	0	0	0	8681	1116	39	4	845	4	LAMA5	20	60885969	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	436	60885969	2139551	1855	138846											
LAMA5	3911	broad.mit.edu	37	chr20	60886057	60886057	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtggccattgctcaggaaGagcgccagggaggggctgcc	17	10	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60886057	C	C	60886057	2	2	168	1	0	0	0	0	0	0	0	1	8681	929	33	4		4	LAMA5	20	60886057	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	88	60886057	2139463	1856	138847											
NTSR1	4923	broad.mit.edu	37	chr20	61341142	61341142	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcagcgccatctggctcGcctcggccctgctggcggtg	13	16	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61341142	A	A	61341142	3	1	168	1	0	0	0	0	1	0	0	0	10805	1087	38	4	585	4	NTSR1	20	61341142	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	455085	61341142	1684378	1857	138848											
COL20A1	57642	broad.mit.edu	37	chr20	61950514	61950514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgctgtggcagatgacagCcgaggacttccagcccctcc	12	16	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61950514	A	A	61950514	3	1	168	1	0	0	0	0	1	0	0	0	3711	739	26	3	2850	3	COL20A1	20	61950514	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	609372	61950514	1075006	1858	138849											
EEF1A2	1917	broad.mit.edu	37	chr20	62121927	62121927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaccgacacgttcttcaCattgaagccgacgttgtcgc	8	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62121927	A	A	62121927	3	1	168	1	0	0	0	0	1	0	0	0	4964	478	17	3	469	3	EEF1A2	20	62121927	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	171413	62121927	903593	1859	138850											
PRIC285	85441	broad.mit.edu	37	chr20	62198635	62198635	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgcatgtggtcgcccgcCagcacgaggcgggtgccgtg	16	14	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62198635	A	A	62198635	2	1	168	1	0	0	0	0	0	0	0	1	12591	581	21	2		2	PRIC285	20	62198635	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	76708	62198635	826885	1860	138851											
TCEA2	6919	broad.mit.edu	37	chr20	62698261	62698261	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaacccagaccacttgcCtcgtagtccacccgagtcgg	8	19	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62698261	T	T	62698261	1	4	168	0	1	0	0	0	0	0	0	0	15790	696	24	4		4	TCEA2	20	62698261	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	499626	62698261	327259	1861	138852											
MYT1	4661	broad.mit.edu	37	chr20	62831117	62831117	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggggaaacggctcaggtctCactgagatttgcctccactc	11	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62831117	T	T	62831117	1	4	168	0	1	0	0	0	0	0	0	0	10200	841	29	4		4	MYT1	20	62831117	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	132856	62831117	194403	1862	138853											
TPTE	7179	broad.mit.edu	37	chr21	10942857	10942857	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagtatagatatcaaccCttgtcaatgggtcccaaaac	6	10	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10942857	A	A	10942857	1	1	168	0	1	0	0	0	0	0	0	0	16554	696	24	2		2	TPTE	21	10942857	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08		10942857	37187038	1863	138854											
BAGE2	85319	broad.mit.edu	37	chr21	11039277	11039277	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagttgctcttgctgcaCagtgatctggtgtgtaacga	12	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11039277	G	G	11039277	1	3	168	0	1	0	0	0	0	0	0	0	1297	493	17	4		4	BAGE2	21	11039277	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	96420	11039277	37090618	1864	138855											
TMPRSS15	5651	broad.mit.edu	37	chr21	19755919	19755919	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatagcttaatgattcaaaGaaatcaaataatgttcacac	4	7	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19755919	C	C	19755919	1	2	168	0	1	0	0	0	0	0	0	0	16369	957	33	4		4	TMPRSS15	21	19755919	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	8716642	19755919	28373976	1865	138856											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212700	28212700	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaagtgtttggtttgacaCaccagcaccccaccagaggt	12	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28212700	A	A	28212700	2	1	168	1	0	0	0	0	0	0	0	1	255	465	17	3		3	ADAMTS1	21	28212700	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	8456781	28212700	19917195	1866	138857											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744160	31744161	+	Nonsense_Mutation	DNP	GG	TT	TT													cccagggatctgacaccactGgacccacagcccactgagta							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31744161	TT	TT	31744160	4	4	168	1	0	0	0	0	0	1	0	0	8594	1335	47	2	159	2	KRTAP13-2	21	31744160	Nonsense_Mutation	DNP	GG	TCGA-50-6590-01A-12D-1855-08	3531460	31744160	16385735	1867	138858											
DOPEY2	9980	broad.mit.edu	37	chr21	37620568	37620568	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accacatgtatgagttgcttAgaagagagtccaacagccca	9	10	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37620568	T	T	37620568	1	4	168	0	1	0	0	0	0	0	0	0	4748	435	15	5		5	DOPEY2	21	37620568	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	5876408	37620568	10509327	1868	138859											
DSCAM	1826	broad.mit.edu	37	chr21	41560956	41560956	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattccattgtgttgtatttGccatgcttttacctgcagag	8	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41560956	T	T	41560956	1	4	168	0	1	0	0	0	0	0	0	0	4808	1334	46	3		3	DSCAM	21	41560956	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	3940388	41560956	6568939	1869	138860											
PRDM15	63977	broad.mit.edu	37	chr21	43246293	43246293	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgctttccatctcagcgtCcgacgtggactgcgagcatt	11	12	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43246293	A	A	43246293	1	1	168	0	1	0	0	0	0	0	0	0	12562	870	30	3		3	PRDM15	21	43246293	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1685337	43246293	4883602	1870	138861											
UBASH3A	53347	broad.mit.edu	37	chr21	43833516	43833516	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctgcacctgtcctcaccCaggcacttccgtttcccgct	8	18	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43833516	G	G	43833516	1	3	168	0	1	0	0	0	0	0	0	0	16965	609	21	4		4	UBASH3A	21	43833516	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	587223	43833516	4296379	1871	138862											
RRP1	8568	broad.mit.edu	37	chr21	45217390	45217390	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgtgaagagccacttcatCgagatcttcctggaggagct	13	9	2	3	rs148457924	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45217390	A	A	45217390	2	1	168	1	0	0	0	0	0	0	0	1	13796	874	31	3		3	RRP1	21	45217390	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	1383874	45217390	2912505	1872	138863											
KRTAP10-12	386685	broad.mit.edu	37	chr21	46117307	46117307	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtatccagcccctgctgccGagtgacctgtgagcccagcc	11	16	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46117307	C	C	46117307	3	2	168	1	0	0	0	0	1	0	0	0	8579	1058	37	4	193	4	KRTAP10-12	21	46117307	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	899917	46117307	2012588	1873	138864											
POTEH	23784	broad.mit.edu	37	chr22	16279360	16279360	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtacatattcctcaacCgaagtggaaactttatataa	5	7	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16279360	A	A	16279360	1	1	168	0	1	0	0	0	0	0	0	0	12363	667	23	1		1	POTEH	22	16279360	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08		16279360	35025206	1874	138865											
DGCR14	8220	broad.mit.edu	37	chr22	19118830	19118830	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcccagccagacgcctcCggtagtgtaaatgaggacaa	12	12	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19118830	T	T	19118830	1	4	168	0	1	0	0	0	0	0	0	0	4500	667	23	4		4	DGCR14	22	19118830	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	2839470	19118830	32185736	1875	138866											
DGCR14	8220	broad.mit.edu	37	chr22	19127438	19127438	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctctccttggccacctccAtgatctcctggaaggaggca	9	14	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19127438	G	G	19127438	3	3	168	1	0	0	0	0	1	0	0	0	4500	217	8	5	958	5	DGCR14	22	19127438	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	8608	19127438	32177128	1876	138867											
DGCR6L	85359	broad.mit.edu	37	chr22	20302978	20302978	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccatcgcccgctgctcctCacggatccggtgttccacgg	11	17	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20302978	T	T	20302978	3	4	168	1	0	0	0	0	1	0	0	0	4503	835	29	4	276	4	DGCR6L	22	20302978	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1175540	20302978	31001588	1877	138868											
PI4KA	5297	broad.mit.edu	37	chr22	21188758	21188758	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggagggagacaagatgcatCtgatgtgtcagtatgaataa	13	4	2	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21188758	T	T	21188758	1	4	168	0	1	0	0	0	0	0	0	0	11968	928	32	4		4	PI4KA	22	21188758	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	885780	21188758	30115808	1878	138869											
MAPK1	5594	broad.mit.edu	37	chr22	22143123	22143123	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagaaagagagaaaagactGaaaatggtatctggtgttac	13	3	1	5	rs61763389	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22143123	A	A	22143123	1	1	168	0	1	0	0	0	0	0	0	0	9363	1305	45	4		4	MAPK1	22	22143123	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	954365	22143123	29161443	1879	138870											
CABIN1	23523	broad.mit.edu	37	chr22	24492066	24492066	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagtagcaccctttaggcGacccctagcagcttacccca	9	15	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24492066	T	T	24492066	1	4	168	0	1	0	0	0	0	0	0	0	2554	1073	37	3		3	CABIN1	22	24492066	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2348943	24492066	26812500	1880	138871											
MYO18B	84700	broad.mit.edu	37	chr22	26157129	26157129	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatggctggggctgcagcCatctgcagggactgactcga	14	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26157129	T	T	26157129	1	4	168	0	1	0	0	0	0	0	0	0	10160	609	21	4		4	MYO18B	22	26157129	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1665063	26157129	25147437	1881	138872											
MYO18B	84700	broad.mit.edu	37	chr22	26294343	26294343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgaagaggaagtgccacCatcttacctgtgaccttgag	10	10	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26294343	A	A	26294343	3	1	168	1	0	0	0	0	1	0	0	0	10160	594	21	2	4848	2	MYO18B	22	26294343	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	137214	26294343	25010223	1882	138873											
MYO18B	84700	broad.mit.edu	37	chr22	26423427	26423427	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccattttgaagaagagccCggagcccaaggaggatcccg	13	11	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26423427	T	T	26423427	3	4	168	1	0	0	0	0	1	0	0	0	10160	652	23	4	7653	4	MYO18B	22	26423427	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	129084	26423427	24881139	1883	138874											
HPS4	89781	broad.mit.edu	37	chr22	26864523	26864523	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactttacaatacctgctcCtgaggtgctgttcggtgaag	12	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26864523	T	T	26864523	2	4	168	1	0	0	0	0	0	0	0	1	7408	680	24	4		4	HPS4	22	26864523	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	441096	26864523	24440043	1884	138875											
ZNRF3	84133	broad.mit.edu	37	chr22	29445223	29445223	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgcggtgtgtgtggagaccAgcaacctctcacgtggtcgg	16	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29445223	G	G	29445223	3	3	168	1	0	0	0	0	1	0	0	0	18342	188	7	5	780	5	ZNRF3	22	29445223	Missense_Mutation	SNP	A	TCGA-50-6590-01A-12D-1855-08	2580700	29445223	21859343	1885	138876											
NEFH	4744	broad.mit.edu	37	chr22	29885826	29885826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggaagaagcaaagaccCccgagaaggccaagtcccca	11	12	0	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29885826	A	A	29885826	3	1	168	1	0	0	0	0	1	0	0	0	10409	623	22	2	2211	2	NEFH	22	29885826	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	440603	29885826	21418740	1886	138877											
NF2	4771	broad.mit.edu	37	chr22	30057102	30057102	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctgctgaaacttgtcacAtgtgacagtgtgtgccagat	11	9	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30057102	T	T	30057102	1	4	168	0	1	0	0	0	0	0	0	0	10452	232	8	5		5	NF2	22	30057102	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	171276	30057102	21247464	1887	138878											
CABP7	164633	broad.mit.edu	37	chr22	30125451	30125451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctccaaccagcagatcCgccagacttgcgtgcgcaag	10	16	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30125451	A	A	30125451	3	1	168	1	0	0	0	0	1	0	0	0	2561	652	23	1	559	1	CABP7	22	30125451	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	68349	30125451	21179115	1888	138879											
TBC1D10A	83874	broad.mit.edu	37	chr22	30688619	30688619	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcttgggtggcttgggCttggctttggagccagggag	19	8	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30688619	T	T	30688619	2	4	168	1	0	0	0	0	0	0	0	1	15717	796	28	4		4	TBC1D10A	22	30688619	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	563168	30688619	20615947	1889	138880											
C22orf30	253143	broad.mit.edu	37	chr22	32097683	32097683	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgggggtaagattaggatcTggcctaggaatggttttccg	15	5	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32097683	C	C	32097683	2	2	168	1	0	0	0	0	0	0	0	1	2164	1567	55	5		5	C22orf30	22	32097683	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	1409064	32097683	19206883	1890	138881											
DEPDC5	9681	broad.mit.edu	37	chr22	32289842	32289842	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattttttagttcaggctctTattaccattcatcgggacta	6	8	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32289842	G	G	32289842	1	3	168	0	1	0	0	0	0	0	0	0	4482	1769	61	5		5	DEPDC5	22	32289842	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	192159	32289842	19014724	1891	138882											
C22orf42	150297	broad.mit.edu	37	chr22	32546309	32546309	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagaaatgcatcttaccatCtccggtgtcatgaggtcttc	8	10	4	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32546309	A	A	32546309	3	1	168	1	0	0	0	0	1	0	0	0	2171	912	32	3	116	3	C22orf42	22	32546309	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	256467	32546309	18758257	1892	138883											
APOL6	80830	broad.mit.edu	37	chr22	36054687	36054687	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgacgctcctctgtgtGaagacgtggagctacaagac	13	9	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36054687	A	A	36054687	3	1	168	1	0	0	0	0	1	0	0	0	812	1291	45	4	82	4	APOL6	22	36054687	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3508378	36054687	15249879	1893	138884											
IL2RB	3560	broad.mit.edu	37	chr22	37524342	37524342	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcagggggtggctgaaaatCcaccaggtctgggactcctg	14	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37524342	G	G	37524342	3	3	168	1	0	0	0	0	1	0	0	0	7757	855	30	4	209	4	IL2RB	22	37524342	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1469655	37524342	13780224	1894	138885											
CARD10	29775	broad.mit.edu	37	chr22	37899160	37899160	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccacctcccccgaccagagGagccctccccacggaactca	8	21	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37899160	A	A	37899160	1	1	168	0	1	0	0	0	0	0	0	0	2670	1189	41	4		4	CARD10	22	37899160	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	374818	37899160	13405406	1895	138886											
PICK1	9463	broad.mit.edu	37	chr22	38468540	38468540	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccccagccagctgcgagcGaggcttttgtgaagttcgcc	13	13	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38468540	A	A	38468540	3	1	168	1	0	0	0	0	1	0	0	0	11976	1059	37	4	643	4	PICK1	22	38468540	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	569380	38468540	12836026	1896	138887											
KDELR3	11015	broad.mit.edu	37	chr22	38864286	38864286	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagccacctcctggccatGatcttgctgctggggaagat	12	12	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38864286	C	C	38864286	3	2	168	1	0	0	0	0	1	0	0	0	8191	1290	45	4	50	4	KDELR3	22	38864286	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	395746	38864286	12440280	1897	138888											
KDELR3	11015	broad.mit.edu	37	chr22	38875670	38875670	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccgtaaaacttttgacagtGagaatgacacattccgcctg	8	10	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38875670	A	A	38875670	3	1	168	1	0	0	0	0	1	0	0	0	8191	1291	45	4	275	4	KDELR3	22	38875670	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	11384	38875670	12428896	1898	138889											
SBF1	6305	broad.mit.edu	37	chr22	50906112	50906112	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcatcctccacgcgcGtcgtttcctgctgggggtca	13	14	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50906112	C	C	50906112	3	2	168	1	0	0	0	0	1	0	0	0	13970	1145	40	4	5546	4	SBF1	22	50906112	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	12030442	50906112	398454	1899	138890											
CSF2RA	1438	broad.mit.edu	37	chrX	1413423	1413424	+	Intron	DNP	GG	TT	TT													acacgcccgcacaggagcctGggaatcccggggaagtggcc							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1413424	TT	TT	1413423	1	4	168	0	1	0	0	0	0	0	0	0	3968	1363	47	2		2	CSF2RA	23	1413423	Intron	DNP	GG	TCGA-50-6590-01A-12D-1855-08		1413423	153857137	1900	138891											
NLGN4X	57502	broad.mit.edu	37	chrX	5810837	5810837	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgggtagggcagagggatAggaagggaaatagggcaaag	20	3	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5810837	T	T	5810837	1	4	168	0	1	0	0	0	0	0	0	0	10559	435	15	5		5	NLGN4X	23	5810837	3'UTR	SNP	A	TCGA-50-6590-01A-12D-1855-08	4397414	5810837	149459723	1901	138892											
FAM9A	171482	broad.mit.edu	37	chrX	8761846	8761846	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgggtaatttttaatactTacaaaacataattctgcatt	4	5	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8761846	C	C	8761846	1	2	168	0	1	0	0	0	0	0	0	0	5716	1769	61	5		5	FAM9A	23	8761846	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	2951009	8761846	146508714	1902	138893											
ARHGAP6	395	broad.mit.edu	37	chrX	11200338	11200338	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacagtgccgtaacatGtagagcaatagtaacttgac	9	10	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11200338	A	A	11200338	1	1	168	0	1	0	0	0	0	0	0	0	889	1392	48	4		4	ARHGAP6	23	11200338	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2438492	11200338	144070222	1903	138894											
ARHGAP6	395	broad.mit.edu	37	chrX	11352823	11352823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcttggcacatgattgacAgagacaaacattaatgctct	8	8	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11352823	G	G	11352823	1	3	168	0	1	0	0	0	0	0	0	0	889	203	7	5		5	ARHGAP6	23	11352823	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	152485	11352823	143917737	1904	138895											
FRMPD4	9758	broad.mit.edu	37	chrX	12725695	12725695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttttagccgactttagCcacgtcaacaggatcgaaat	8	11	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12725695	A	A	12725695	3	1	168	1	0	0	0	0	1	0	0	0	6119	738	26	3	1445	3	FRMPD4	23	12725695	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1372872	12725695	142544865	1905	138896											
FRMPD4	9758	broad.mit.edu	37	chrX	12728532	12728532	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtagcctatcacgcttctGatggaatcctcagatgccat	9	11	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12728532	T	T	12728532	2	4	168	1	0	0	0	0	0	0	0	1	6119	1277	45	3		3	FRMPD4	23	12728532	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	2837	12728532	142542028	1906	138897											
GPM6B	2824	broad.mit.edu	37	chrX	13825686	13825686	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaagcaaaacataaaatatCaccaagctgcaagagccatt	5	11	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13825686	T	T	13825686	1	4	168	0	1	0	0	0	0	0	0	0	6681	841	29	4		4	GPM6B	23	13825686	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1097154	13825686	141444874	1907	138898											
GLRA2	2742	broad.mit.edu	37	chrX	14550574	14550574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactgaaaaacattttcagGgcttttaattataaaatgaa	5	4	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14550574	T	T	14550574	1	4	168	0	1	0	0	0	0	0	0	0	6519	1247	43	2		2	GLRA2	23	14550574	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	724888	14550574	140719986	1908	138899											
TXLNG	55787	broad.mit.edu	37	chrX	16850763	16850763	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagcacattgataaggtgttCaaacataaggaactgcaaca	8	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16850763	G	G	16850763	3	3	168	1	0	0	0	0	1	0	0	0	16915	825	29	4	904	4	TXLNG	23	16850763	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2300189	16850763	138419797	1909	138900											
PPEF1	5475	broad.mit.edu	37	chrX	18768099	18768099	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcagatgctgccttgattCttgtacataacagatgccca	8	10	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18768099	G	G	18768099	1	3	168	0	1	0	0	0	0	0	0	0	12403	928	32	4		4	PPEF1	23	18768099	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1917336	18768099	136502461	1910	138901											
GPR64	10149	broad.mit.edu	37	chrX	19042029	19042029	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggtgcactatgattacctCacttagggtttgcagggttt	12	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19042029	A	A	19042029	4	1	168	1	0	0	0	0	0	1	0	0	6770	835	29	3	2617	3	GPR64	23	19042029	Nonsense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	273930	19042029	136228531	1911	138902											
CNKSR2	22866	broad.mit.edu	37	chrX	21534381	21534381	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttagtctttgatttgacatGgtaaatgtccattatgttgt	8	4	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21534381	C	C	21534381	1	2	168	0	1	0	0	0	0	0	0	0	3639	1363	47	4		4	CNKSR2	23	21534381	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2492352	21534381	133736179	1912	138903											
SMPX	23676	broad.mit.edu	37	chrX	21755551	21755551	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaaatactgacttaaattGaaggcacctggtatttaatg	8	6	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21755551	C	C	21755551	1	2	168	0	1	0	0	0	0	0	0	0	14924	1305	45	4		4	SMPX	23	21755551	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	221170	21755551	133515009	1913	138904											
KLHL15	80311	broad.mit.edu	37	chrX	24006319	24006319	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgggttgtatacttctgTagaagggcatccctgagatt	11	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24006319	C	C	24006319	3	2	168	1	0	0	0	0	1	0	0	0	8442	1638	57	5	284	5	KLHL15	23	24006319	Missense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	2250768	24006319	131264241	1914	138905											
EIF2S3	1968	broad.mit.edu	37	chrX	24082539	24082539	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgtttattaatatttcctCtttctgcagaggtgataatt	7	5	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24082539	G	G	24082539	1	3	168	0	1	0	0	0	0	0	0	0	5051	928	32	4		4	EIF2S3	23	24082539	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	76220	24082539	131188021	1915	138906											
FAM48B2	170067	broad.mit.edu	37	chrX	24329527	24329527	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtatttaggaaaaactgaaGgggtgctggagaagatgcct	14	4	0	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24329527	C	C	24329527	3	2	168	1	0	0	0	0	1	0	0	0	5625	1000	35	4	550	4	FAM48B2	23	24329527	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	246988	24329527	130941033	1916	138907											
PCYT1B	9468	broad.mit.edu	37	chrX	24608167	24608167	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttccagaaactctggcgtGagtgtccagggagcatctct	11	10	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24608167	T	T	24608167	2	4	168	1	0	0	0	0	0	0	0	1	11705	1277	45	3		3	PCYT1B	23	24608167	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	278640	24608167	130662393	1917	138908											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997756	27997756	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggaactcagctccatgatCtctccagccgggttgatgag	12	11	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27997756	T	T	27997756	3	4	168	1	0	0	0	0	1	0	0	0	4310	913	32	4	110	4	DCAF8L1	23	27997756	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3389589	27997756	127272804	1918	138909											
CXorf22	170063	broad.mit.edu	37	chrX	35969364	35969364	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggaatgcatacactttgGtcctgttttcttcggatcat	9	9	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35969364	C	C	35969364	3	2	168	1	0	0	0	0	1	0	0	0	4135	1261	44	4	791	4	CXorf22	23	35969364	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	7971608	35969364	119301196	1919	138910											
PRRG1	5638	broad.mit.edu	37	chrX	37312670	37312670	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccaggctttctgggataTgtagttgggcgctcagattc	12	9	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37312670	C	C	37312670	2	2	168	1	0	0	0	0	0	0	0	1	12711	1471	51	5		5	PRRG1	23	37312670	Silent	SNP	T	TCGA-50-6590-01A-12D-1855-08	1343306	37312670	117957890	1920	138911											
LANCL3	347404	broad.mit.edu	37	chrX	37514997	37514997	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaattctggactctgggaaGcagtatgccataaagaagag	12	7	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37514997	A	A	37514997	2	1	168	1	0	0	0	0	0	0	0	1	8694	962	34	4		4	LANCL3	23	37514997	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	202327	37514997	117755563	1921	138912											
GPKOW	27238	broad.mit.edu	37	chrX	48976099	48976099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgccaggtttccagccCatgccccgcagcatggccag	10	19	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48976099	A	A	48976099	3	1	168	1	0	0	0	0	1	0	0	0	6678	594	21	2	937	2	GPKOW	23	48976099	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	11461102	48976099	106294461	1922	138913											
DGKK	139189	broad.mit.edu	37	chrX	50135414	50135414	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccaccacaaaccagaatGcgaaagcgagcaaagttctt	7	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50135414	T	T	50135414	2	4	168	1	0	0	0	0	0	0	0	1	4512	1306	46	3		3	DGKK	23	50135414	Silent	SNP	G	TCGA-50-6590-01A-12D-1855-08	1159315	50135414	105135146	1923	138914											
DGKK	139189	broad.mit.edu	37	chrX	50146598	50146598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatttcactttgcacactGtgagaagaggaagagaaaag	12	5	1	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50146598	T	T	50146598	1	4	168	0	1	0	0	0	0	0	0	0	4512	1392	48	3		3	DGKK	23	50146598	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	11184	50146598	105123962	1924	138915											
FAM120C	54954	broad.mit.edu	37	chrX	54184102	54184102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcccctaatctgtataggCaagaaataggaaacattacc	6	9	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54184102	A	A	54184102	1	1	168	0	1	0	0	0	0	0	0	0	5464	725	25	3		3	FAM120C	23	54184102	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4037504	54184102	101086458	1925	138916											
GNL3L	54552	broad.mit.edu	37	chrX	54569523	54569523	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagggttccagtccagcccCttttcctctccatttctgtt	8	14	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54569523	G	G	54569523	1	3	168	0	1	0	0	0	0	0	0	0	6602	696	24	4		4	GNL3L	23	54569523	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	385421	54569523	100701037	1926	138917											
ITIH5L	347365	broad.mit.edu	37	chrX	54783437	54783437	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtatagaaagctggtgGgttcaaggactccacgaact	13	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54783437	A	A	54783437	3	1	168	1	0	0	0	0	1	0	0	0	7978	1232	43	4	895	4	ITIH5L	23	54783437	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	213914	54783437	100487123	1927	138918											
FAAH2	158584	broad.mit.edu	37	chrX	57419873	57419873	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caatgtctgctccaaatcccGcctccgtcactacaaaccct	4	18	2	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57419873	C	C	57419873	1	2	168	0	1	0	0	0	0	0	0	0	5400	1102	38	4		4	FAAH2	23	57419873	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2636436	57419873	97850687	1928	138919											
MSN	4478	broad.mit.edu	37	chrX	64958393	64958393	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caatttatccgtaggccttgGaaatggcagagctgacagct	11	9	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64958393	C	C	64958393	3	2	168	1	0	0	0	0	1	0	0	0	9979	1175	41	4	1300	4	MSN	23	64958393	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	7538520	64958393	90312167	1929	138920											
HEPH	9843	broad.mit.edu	37	chrX	65409517	65409517	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatattttctttgggttttCttttgcagcaatcaatggct	8	6	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65409517	G	G	65409517	1	3	168	0	1	0	0	0	0	0	0	0	7121	928	32	4		4	HEPH	23	65409517	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	451124	65409517	89861043	1930	138921											
HEPH	9843	broad.mit.edu	37	chrX	65428069	65428069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaatctactactgtctgGccactggctgctgagcctgg	11	12	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65428069	T	T	65428069	3	4	168	1	0	0	0	0	1	0	0	0	7121	1212	42	3	2764	3	HEPH	23	65428069	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	18552	65428069	89842491	1931	138922											
OPHN1	4983	broad.mit.edu	37	chrX	67413739	67413739	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcagatcttacctttggtCtcaataatattgatgcactt	6	8	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67413739	A	A	67413739	3	1	168	1	0	0	0	0	1	0	0	0	10969	912	32	3	1258	3	OPHN1	23	67413739	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1985670	67413739	87856821	1932	138923											
YIPF6	286451	broad.mit.edu	37	chrX	67731848	67731848	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactagttgagagaacttctGttcagtatcatgggactaag	11	6	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67731848	A	A	67731848	1	1	168	0	1	0	0	0	0	0	0	0	17609	1392	48	4		4	YIPF6	23	67731848	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	318109	67731848	87538712	1933	138924											
STARD8	9754	broad.mit.edu	37	chrX	67939192	67939192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcactgctgcggcttaCcgcgttcatggagaagtaca	13	11	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67939192	A	A	67939192	3	1	168	1	0	0	0	0	1	0	0	0	15381	507	18	3	1867	3	STARD8	23	67939192	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	207344	67939192	87331368	1934	138925											
ARR3	407	broad.mit.edu	37	chrX	69500011	69500011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaattactcttcatgccCcaaacaccctaaaacgaata	3	12	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69500011	A	A	69500011	1	1	168	0	1	0	0	0	0	0	0	0	983	638	22	2		2	ARR3	23	69500011	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1560819	69500011	85770549	1935	138926											
RAB41	347517	broad.mit.edu	37	chrX	69504354	69504354	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaagatcagaattcctcttCtacatctcctagaagctgac	6	11	4	4			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69504354	A	A	69504354	1	1	168	0	1	0	0	0	0	0	0	0	13051	928	32	3		3	RAB41	23	69504354	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	4343	69504354	85766206	1936	138927											
CXorf65	158830	broad.mit.edu	37	chrX	70326315	70326315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacacatgggcccatttctGtgatctccactgccctcaga	9	14	3	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70326315	T	T	70326315	1	4	168	0	1	0	0	0	0	0	0	0	4150	1392	48	3		3	CXorf65	23	70326315	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	821961	70326315	84944245	1937	138928											
OGT	8473	broad.mit.edu	37	chrX	70782807	70782807	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcagtattccgagaaattGgcttatatgccccacacttt	8	10	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70782807	C	C	70782807	3	2	168	1	0	0	0	0	1	0	0	0	10942	1339	47	4	2150	4	OGT	23	70782807	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	456492	70782807	84487753	1938	138929											
TAF9B	51616	broad.mit.edu	37	chrX	77388807	77388807	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttcaaattattcacaaaTtctgtcccccactcccaatc	1	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77388807	C	C	77388807	1	2	168	0	1	0	0	0	0	0	0	0	15655	1508	52	5		5	TAF9B	23	77388807	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	6606000	77388807	77881753	1939	138930											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912978	77912978	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctggattatcaaaagtatCctggagcacaggtatgaaac	9	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77912978	G	G	77912978	3	3	168	1	0	0	0	0	1	0	0	0	17717	855	30	4	491	4	ZCCHC5	23	77912978	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	524171	77912978	77357582	1940	138931											
ITM2A	9452	broad.mit.edu	37	chrX	78618355	78618355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacatgtgcattcatgaaTgaatttaatacctgccaatg	6	7	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78618355	C	C	78618355	1	2	168	0	1	0	0	0	0	0	0	0	7982	1479	51	5		5	ITM2A	23	78618355	Intron	SNP	T	TCGA-50-6590-01A-12D-1855-08	705377	78618355	76652205	1941	138932											
POF1B	79983	broad.mit.edu	37	chrX	84562267	84562267	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctttctcaagtctcatctTgtcattttccagtgactaga	5	10	5	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84562267	A	A	84562267	4	1	168	1	0	0	0	0	0	1	0	0	12277	1821	63	5	731	5	POF1B	23	84562267	Nonsense_Mutation	SNP	T	TCGA-50-6590-01A-12D-1855-08	5943912	84562267	70708293	1942	138933											
CHM	1121	broad.mit.edu	37	chrX	85211305	85211305	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctgatgtcattgcaattGaatgcatgacaatatattgg	8	6	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85211305	T	T	85211305	4	4	168	1	0	0	0	0	0	1	0	0	3381	1294	45	3	974	3	CHM	23	85211305	Nonsense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	649038	85211305	70059255	1943	138934											
PABPC5	140886	broad.mit.edu	37	chrX	90690624	90690624	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcaagaaaaagaagtatctCaaggccgctctgtacgtggg	13	8	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90690624	A	A	90690624	2	1	168	1	0	0	0	0	0	0	0	1	11461	813	29	3		3	PABPC5	23	90690624	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	5479319	90690624	64579936	1944	138935											
PCDH11X	27328	broad.mit.edu	37	chrX	91134268	91134268	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgtgtccgtacacaccaGaccggtaggtatccaagttt	9	12	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91134268	T	T	91134268	3	4	168	1	0	0	0	0	1	0	0	0	11602	942	33	3	3035	3	PCDH11X	23	91134268	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	443644	91134268	64136292	1945	138936											
NXF5	55998	broad.mit.edu	37	chrX	101091631	101091631	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatattgagaacaccctgagGactgcacccaacacattccc	6	14	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101091631	A	A	101091631	1	1	168	0	1	0	0	0	0	0	0	0	10881	1189	41	4		4	NXF5	23	101091631	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	9957363	101091631	54178929	1946	138937											
NXF5	55998	broad.mit.edu	37	chrX	101096538	101096538	+	Intron	DEL	A	-	-													caaatatacatatctgcaggAaggcagggtggtaagtacca							TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101096538	-	-	101096538	6	5	168	0	1	1	0	1	0	0	0	0	10881	261	9	0		0	NXF5	23	101096538	Intron	DEL	A	TCGA-50-6590-01A-12D-1855-08	4907	101096538	54174022	1947	138938											
GPRASP1	9737	broad.mit.edu	37	chrX	101910920	101910920	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgccggtggaggaagttgGaagtctaggccagaggagga	18	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101910920	T	T	101910920	3	4	168	1	0	0	0	0	1	0	0	0	6788	1183	41	3	2081	3	GPRASP1	23	101910920	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	814382	101910920	53359640	1948	138939											
MID2	11043	broad.mit.edu	37	chrX	107084007	107084007	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caatctgcctagagttgtttGaagacccccttctgctccct	7	14	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107084007	A	A	107084007	3	1	168	1	0	0	0	0	1	0	0	0	9671	1291	45	4	118	4	MID2	23	107084007	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	5173087	107084007	48186553	1949	138940											
CHRDL1	91851	broad.mit.edu	37	chrX	109919662	109919662	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaattaggaatagaaccaAtataccccatgcttacccac	5	12	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109919662	G	G	109919662	1	3	168	0	1	0	0	0	0	0	0	0	3404	116	4	5		5	CHRDL1	23	109919662	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	2835655	109919662	45350898	1950	138941											
PAK3	5063	broad.mit.edu	37	chrX	110459751	110459751	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgctgtcttgagatggatGtggataggcgaggatctgcc	15	7	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110459751	A	A	110459751	3	1	168	1	0	0	0	0	1	0	0	0	11496	1377	48	4	1676	4	PAK3	23	110459751	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	540089	110459751	44810809	1951	138942											
DCX	1641	broad.mit.edu	37	chrX	110544905	110544905	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactctggactctgagcactCtcccctcctttacatggaat	6	14	3	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110544905	A	A	110544905	1	1	168	0	1	0	0	0	0	0	0	0	4351	928	32	3		3	DCX	23	110544905	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	85154	110544905	44725655	1952	138943											
ZCCHC16	340595	broad.mit.edu	37	chrX	111624847	111624847	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaagaagacaagaatcagcCttcaggtgtgccgaacaaat	10	9	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111624847	T	T	111624847	1	4	168	0	1	0	0	0	0	0	0	0	17710	696	24	4		4	ZCCHC16	23	111624847	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	1079942	111624847	43645713	1953	138944											
ZCCHC12	170261	broad.mit.edu	37	chrX	117959226	117959226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggctagcatcattgcaCgtgtcggtaacagccggcgg	13	11	2	0	rs35356061	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117959226	A	A	117959226	3	1	168	1	0	0	0	0	1	0	0	0	17707	536	19	3	21	3	ZCCHC12	23	117959226	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	6334379	117959226	37311334	1954	138945											
ATP1B4	23439	broad.mit.edu	37	chrX	119510248	119510248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatagattgtaggctttcGtcctgagcttggagatcctg	12	7	0	4	rs143954745	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119510248	T	T	119510248	3	4	168	1	0	0	0	0	1	0	0	0	1139	1145	40	3	795	3	ATP1B4	23	119510248	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	1551022	119510248	35760312	1955	138946											
GRIA3	2892	broad.mit.edu	37	chrX	122532532	122532532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatactggtcatagcagaaGctttccgctacctgaggagg	11	10	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122532532	T	T	122532532	3	4	168	1	0	0	0	0	1	0	0	0	6835	971	34	3	984	3	GRIA3	23	122532532	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3022284	122532532	32738028	1956	138947											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685253	125685253	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcagggagaggcccccCagccacaaagagcttcatct	11	15	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125685253	A	A	125685253	3	1	168	1	0	0	0	0	1	0	0	0	4297	594	21	2	56	2	DCAF12L1	23	125685253	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	3152721	125685253	29585307	1957	138948											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685683	125685683	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattatcccggaagtagggCagcctgatggacagcagcct	12	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125685683	A	A	125685683	2	1	168	1	0	0	0	0	0	0	0	1	4297	697	25	3		3	DCAF12L1	23	125685683	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	430	125685683	29584877	1958	138949											
XPNPEP2	7512	broad.mit.edu	37	chrX	128887107	128887107	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagacctgtgcccccagacCtccttttctcctccctgccc	5	22	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128887107	T	T	128887107	1	4	168	0	1	0	0	0	0	0	0	0	17570	696	24	4		4	XPNPEP2	23	128887107	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	3201424	128887107	26383453	1959	138950											
FRMD7	90167	broad.mit.edu	37	chrX	131264787	131264787	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacacaggctgttcctttTcacccttgatctgcaagacg	7	13	2	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131264787	G	G	131264787	1	3	168	0	1	0	0	0	0	0	0	0	6115	1798	62	5		5	FRMD7	23	131264787	5'Flank	SNP	T	TCGA-50-6590-01A-12D-1855-08	2377680	131264787	24005773	1960	138951											
SAGE1	55511	broad.mit.edu	37	chrX	134988091	134988091	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcctggtttatgggatAatttcctagaaactgagcat	9	8	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134988091	T	T	134988091	1	4	168	0	1	0	0	0	0	0	0	0	13920	377	13	5		5	SAGE1	23	134988091	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	3723304	134988091	20282469	1961	138952											
SAGE1	55511	broad.mit.edu	37	chrX	134990365	134990365	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggcaggagctggtattcCacccatgagtaccagggatc	12	11	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134990365	G	G	134990365	3	3	168	1	0	0	0	0	1	0	0	0	13920	594	21	4	1315	4	SAGE1	23	134990365	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	2274	134990365	20280195	1962	138953											
SLC9A6	10479	broad.mit.edu	37	chrX	135076887	135076887	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatccatagttatgcgtgGggtacaaaagaagtggtctc	11	7	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135076887	A	A	135076887	1	1	168	0	1	0	0	0	0	0	0	0	14832	1247	43	4		4	SLC9A6	23	135076887	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	86522	135076887	20193673	1963	138954											
FHL1	2273	broad.mit.edu	37	chrX	135279219	135279219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccacagccttatcagctGgggttgagggaagactggtc	15	9	1	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135279219	T	T	135279219	1	4	168	0	1	0	0	0	0	0	0	0	5935	1363	47	2		2	FHL1	23	135279219	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	202332	135279219	19991341	1964	138955											
FHL1	2273	broad.mit.edu	37	chrX	135290607	135290607	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatccggtgctacactccctGgtctaggccatcacatctgg	9	14	3	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135290607	A	A	135290607	1	1	168	0	1	0	0	0	0	0	0	0	5935	1363	47	4		4	FHL1	23	135290607	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	11388	135290607	19979953	1965	138956											
GPR112	139378	broad.mit.edu	37	chrX	135455156	135455156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggctttggctgtgctgcGgggggaccacacgtttgatg	17	9	0	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135455156	T	T	135455156	3	4	168	1	0	0	0	0	1	0	0	0	6694	1116	39	1	7755	1	GPR112	23	135455156	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	164549	135455156	19815404	1966	138957											
ARHGEF6	9459	broad.mit.edu	37	chrX	135760186	135760186	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataatgaccaaatccacttAtcaataattctaaaacaaca	1	9	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135760186	T	T	135760186	1	4	168	0	1	0	0	0	0	0	0	0	912	464	16	5		5	ARHGEF6	23	135760186	Intron	SNP	A	TCGA-50-6590-01A-12D-1855-08	305030	135760186	19510374	1967	138958											
F9	2158	broad.mit.edu	37	chrX	138613141	138613141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagtctaacagccagcaCgcaggttggtaagtactggt	13	8	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138613141	A	A	138613141	1	1	168	0	1	0	0	0	0	0	0	0	5397	551	19	3		3	F9	23	138613141	Intron	SNP	C	TCGA-50-6590-01A-12D-1855-08	2852955	138613141	16657419	1968	138959											
MAGEC1	9947	broad.mit.edu	37	chrX	140995587	140995587	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttcccatgagagtcctcaGagtcctcctgaggggcctgc	12	13	1	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140995587	T	T	140995587	3	4	168	1	0	0	0	0	1	0	0	0	9272	933	33	3	2403	3	MAGEC1	23	140995587	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	2382446	140995587	14274973	1969	138960											
SLITRK4	139065	broad.mit.edu	37	chrX	142718605	142718605	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaactgctttaatgcaCtgagcccaagaaaggctcct	9	11	0	2			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142718605	T	T	142718605	3	4	168	1	0	0	0	0	1	0	0	0	14859	565	20	4	2197	4	SLITRK4	23	142718605	Missense_Mutation	SNP	C	TCGA-50-6590-01A-12D-1855-08	1723018	142718605	12551955	1970	138961											
CXorf1	9142	broad.mit.edu	37	chrX	144909468	144909468	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcaaaatggttccagcCtacagaatgcagtctcccag	8	13	1	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144909468	A	A	144909468	2	1	168	1	0	0	0	0	0	0	0	1	4133	668	24	2		2	CXorf1	23	144909468	Silent	SNP	C	TCGA-50-6590-01A-12D-1855-08	2190863	144909468	10361092	1971	138962											
FMR1NB	158521	broad.mit.edu	37	chrX	147090235	147090235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttttctggaggaggtaGgtgaacataaacttttattt	9	5	2	1			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147090235	T	T	147090235	1	4	168	0	1	0	0	0	0	0	0	0	6019	1015	35	2		2	FMR1NB	23	147090235	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	2180767	147090235	8180325	1972	138963											
AFF2	2334	broad.mit.edu	37	chrX	147967551	147967551	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctttgttttgggatgaagGggggagcaggaggaactgga	20	3	0	1	rs148137743	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147967551	A	A	147967551	1	1	168	0	1	0	0	0	0	0	0	0	357	1247	43	4		4	AFF2	23	147967551	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	877316	147967551	7303009	1973	138964											
AFF2	2334	broad.mit.edu	37	chrX	148059311	148059311	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcattttgtgtatgttttcgGggaagcatgcttttgcccac	10	8	1	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148059311	C	C	148059311	1	2	168	0	1	0	0	0	0	0	0	0	357	1247	43	4		4	AFF2	23	148059311	Intron	SNP	G	TCGA-50-6590-01A-12D-1855-08	91760	148059311	7211249	1974	138965											
GABRQ	55879	broad.mit.edu	37	chrX	151815584	151815584	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtgactgtggagaatcGcgtgtttcagcttcacccag	12	9	2	3			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151815584	A	A	151815584	3	1	168	1	0	0	0	0	1	0	0	0	6235	1087	38	4	496	4	GABRQ	23	151815584	Missense_Mutation	SNP	G	TCGA-50-6590-01A-12D-1855-08	3756273	151815584	3454976	1975	138966											
MAGEA6	4105	broad.mit.edu	37	chrX	151870313	151870313	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtttgggccagtgcaccttCcggggccccatcccttagtt	12	14	0	0			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151870313	A	A	151870313	1	1	168	0	1	0	0	0	0	0	0	0	9260	870	30	3		3	MAGEA6	23	151870313	3'UTR	SNP	C	TCGA-50-6590-01A-12D-1855-08	54729	151870313	3400247	1976	138967											
EIF4G3	8672	broad.mit.edu	37	chr1	21183820	21183821	+	Intron	DEL	TG	-	-													gttttgcaactattgtaaatTgtgtgtgtgtgtgtgtgttt							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21183821	-	-	21183820	6	5	169	0	1	1	0	1	0	0	0	0	5080	1827	63	0		0	EIF4G3	1	21183820	Intron	DEL	TG	TCGA-50-6591-01A-11D-1753-08		21183820	228066801	1	138968											
ASAP3	55616	broad.mit.edu	37	chr1	23763945	23763945	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcgtgctcgtcctctgcctGaaagtggtacgtccggttgt	12	12	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23763945	T	T	23763945	3	4	169	1	0	0	0	0	1	0	0	0	1016	1299	45	3	1640	3	ASAP3	1	23763945	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	2580125	23763945	225486676	2	138969											
CSMD2	114784	broad.mit.edu	37	chr1	34049273	34049273	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaactcatcatattgcttCtcgctgaggaagtactccac	6	12	4	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34049273	T	T	34049273	2	4	169	1	0	0	0	0	0	0	0	1	3979	912	32	4		4	CSMD2	1	34049273	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08	10285328	34049273	215201348	3	138970											
MRPS15	64960	broad.mit.edu	37	chr1	36923551	36923551	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttctccaagtgttcttcAtaactgcggatcttgacaga	8	9	4	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36923551	T	T	36923551	4	4	169	1	0	0	0	0	0	1	0	0	9919	224	8	5	368	5	MRPS15	1	36923551	Nonsense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	2874278	36923551	212327070	4	138971											
MAGI3	260425	broad.mit.edu	37	chr1	114186352	114186352	+	Intron	DEL	T	-	-													tggttttaaactttggttcaTtttttttttaaggtcctcct							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114186352	-	-	114186352	6	5	169	0	1	1	0	1	0	0	0	0	9284	1508	52	0		0	MAGI3	1	114186352	Intron	DEL	T	TCGA-50-6591-01A-11D-1753-08	77262801	114186352	135064269	5	138972											
POGZ	23126	broad.mit.edu	37	chr1	151380726	151380726	+	Intron	DEL	A	-	-													ccatgacactcctgtgggggAaaaaaaaaaagaattctcat					rs112072925		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151380726	-	-	151380726	6	5	169	0	1	1	0	1	0	0	0	0	12281	261	9	0		0	POGZ	1	151380726	Intron	DEL	A	TCGA-50-6591-01A-11D-1753-08	37194374	151380726	97869895	6	138973											
TCHHL1	126637	broad.mit.edu	37	chr1	152059758	152059758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgccattcctgaaggaaGcatcctcttttcttgagttg	9	9	2	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152059758	T	T	152059758	3	4	169	1	0	0	0	0	1	0	0	0	15823	971	34	3	2318	3	TCHHL1	1	152059758	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	679032	152059758	97190863	7	138974											
CD1A	909	broad.mit.edu	37	chr1	158224874	158224874	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctgttcttttgtcgcagGgctcaaggagcctctctcct	9	12	4	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158224874	A	A	158224874	3	1	169	1	0	0	0	0	1	0	0	0	3004	1246	43	4	65	4	CD1A	1	158224874	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	6165116	158224874	91025747	8	138975											
SELP	6403	broad.mit.edu	37	chr1	169564029	169564029	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctagacaatggaaagagcAgattgatccataactgaagt	9	7	1	5			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169564029	G	G	169564029	3	3	169	1	0	0	0	0	1	0	0	0	14132	188	7	5	320	5	SELP	1	169564029	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	11339155	169564029	79686592	9	138976											
UCHL5	51377	broad.mit.edu	37	chr1	192998323	192998323	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cattacctaaatcaatcggtCcttctcttaatccatctaat	2	12	3	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192998323	T	T	192998323	3	4	169	1	0	0	0	0	1	0	0	0	17048	855	30	4	462	4	UCHL5	1	192998323	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	23434294	192998323	56252298	10	138977											
CAPN2	824	broad.mit.edu	37	chr1	223962514	223962514	+	Intron	DEL	T	-	-													aaagtggtcactgagctgacTtttttttttccttcctcaca							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	223962514	-	-	223962514	6	5	169	0	1	1	0	1	0	0	0	0	2653	1624	56	0		0	CAPN2	1	223962514	Intron	DEL	T	TCGA-50-6591-01A-11D-1753-08	30964191	223962514	25288107	11	138978											
ACBD3	64746	broad.mit.edu	37	chr1	226349289	226349289	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctttcctcttcctccCgtcgaagcctttcctcttct	4	18	4	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226349289	A	A	226349289	3	1	169	1	0	0	0	0	1	0	0	0	123	652	23	1	935	1	ACBD3	1	226349289	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	2386775	226349289	22901332	12	138979											
SIPA1L2	57568	broad.mit.edu	37	chr1	232564299	232564300	+	Frame_Shift_Ins	INS	-	C	C													tgtggacatgacatccatctINScactatacatcctgttgaaa							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	232564300	C	C	232564299	7	5	169	1	0	1	1	0	0	0	0	0	14443	1551	54	0	928	0	SIPA1L2	1	232564299	Frame_Shift_Ins	INS	-	TCGA-50-6591-01A-11D-1753-08	6215010	232564299	16686322	13	138980											
KIAA1804	84451	broad.mit.edu	37	chr1	233489706	233489707	+	Intron	DEL	TG	-	-													gccaagctcatgaaaggtatTgtgtgtgtgtgtgtgtgtct					rs7551511	by1000genomes	TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	233489707	-	-	233489706	6	5	169	0	1	1	0	1	0	0	0	0	8329	1827	63	0		0	KIAA1804	1	233489706	Intron	DEL	TG	TCGA-50-6591-01A-11D-1753-08	925407	233489706	15760915	14	138981											
OR2M5	127059	broad.mit.edu	37	chr1	248308638	248308638	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccccatgtacttcctcctCagtcaactgttcctcatgga	5	16	3	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248308638	A	A	248308638	2	1	169	1	0	0	0	0	0	0	0	1	11107	813	29	3		3	OR2M5	1	248308638	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08	14818932	248308638	941983	15	138982											
OR2T1	26696	broad.mit.edu	37	chr1	248569685	248569685	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttccactattgtgcctaaGatgctggttaattacctgct	7	9	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248569685	T	T	248569685	3	4	169	1	0	0	0	0	1	0	0	0	11110	933	33	3	392	3	OR2T1	1	248569685	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	261047	248569685	680936	16	138983											
NBAS	51594	broad.mit.edu	37	chr2	15693632	15693632	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagagggggaagaaaatctAttatgaatatctatagcagt	10	3	2	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15693632	G	G	15693632	1	3	169	0	1	0	0	0	0	0	0	0	10280	464	16	5		5	NBAS	2	15693632	Intron	SNP	A	TCGA-50-6591-01A-11D-1753-08		15693632	227505741	17	138984											
PLB1	151056	broad.mit.edu	37	chr2	28816814	28816815	+	Intron	INS	-	TTT	TTT													atattttactgttgataatcINSttttttttttttttgattgt					rs35712549		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTT	28816815	TTT	TTT	28816814	6	5	169	0	1	1	1	0	0	0	0	0	12119	928	32	0		0	PLB1	2	28816814	Intron	INS	-	TCGA-50-6591-01A-11D-1753-08	13123182	28816814	214382559	18	138985											
C2orf34	79823	broad.mit.edu	37	chr2	44934525	44934525	+	Intron	DEL	T	-	-													tcattgtttgctgtgctcccTtttttttttcaggttgctat							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44934525	-	-	44934525	6	5	169	0	1	1	0	1	0	0	0	0	2185	1624	56	0		0	C2orf34	2	44934525	Intron	DEL	T	TCGA-50-6591-01A-11D-1753-08	16117711	44934525	198264848	19	138986											
DYSF	8291	broad.mit.edu	37	chr2	71753488	71753488	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgcagagtgcgtggggcGcgcccttgggtgggaggtct	20	10	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71753488	A	A	71753488	1	1	169	0	1	0	0	0	0	0	0	0	4899	1102	38	4		4	DYSF	2	71753488	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	26818963	71753488	171445885	20	138987											
ALMS1	7840	broad.mit.edu	37	chr2	73746982	73746982	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcactcagataacaacagAaagtccagaaaagaccctat	6	10	2	4			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73746982	G	G	73746982	3	3	169	1	0	0	0	0	1	0	0	0	535	246	9	5	9659	5	ALMS1	2	73746982	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	1993494	73746982	169452391	21	138988											
RMND5A	64795	broad.mit.edu	37	chr2	87096022	87096022	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaacatagaaatacacTtacttccagatttacaaaca	2	8	0	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87096022	G	G	87096022	1	3	169	0	1	0	0	0	0	0	0	0	13508	1624	56	5		5	RMND5A	2	87096022	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08	13349040	87096022	156103351	22	138989											
MERTK	10461	broad.mit.edu	37	chr2	112751940	112751940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcaccagagggggagttgGgcccttcagtgatccagtga	15	10	2	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112751940	T	T	112751940	3	4	169	1	0	0	0	0	1	0	0	0	9572	1232	43	2	1443	2	MERTK	2	112751940	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	25655918	112751940	130447433	23	138990											
CLASP1	23332	broad.mit.edu	37	chr2	122160142	122160145	+	Intron	DEL	ACTA	-	-													cttacaggcagctaacaaatActaactaaactgagacctcc							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122160145	-	-	122160142	6	5	169	0	1	1	0	1	0	0	0	0	3485	406	14	0		0	CLASP1	2	122160142	Intron	DEL	ACTA	TCGA-50-6591-01A-11D-1753-08	9408202	122160142	121039231	24	138991											
ACVR1	90	broad.mit.edu	37	chr2	158634653	158634653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgacttactgctaaagtgCtgtctccaacattggtggtg	10	9	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158634653	A	A	158634653	3	1	169	1	0	0	0	0	1	0	0	0	220	797	28	3	1024	3	ACVR1	2	158634653	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	36474511	158634653	84564720	25	138992											
XIRP2	129446	broad.mit.edu	37	chr2	168104846	168104846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcctcctccacctcCtttgatgatgtttcctgaaa	4	15	1	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168104846	A	A	168104846	3	1	169	1	0	0	0	0	1	0	0	0	17557	681	24	2	6974	2	XIRP2	2	168104846	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	9470193	168104846	75094527	26	138993											
TTN	7273	broad.mit.edu	37	chr2	179441553	179441553	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtttttcaggagggccagGgggacctgaaaaggaagcaa	16	6	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179441553	A	A	179441553	3	1	169	1	0	0	0	0	1	0	0	0	16861	1232	43	4	38713	4	TTN	2	179441553	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	11336707	179441553	63757820	27	138994											
COL6A3	1293	broad.mit.edu	37	chr2	238247766	238247767	+	Intron	INS	-	A	A													aaaagcattttcacctaaagINSaaaaaaaacaaagaaaacaa					rs111494366		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238247767	A	A	238247766	6	5	169	0	1	1	1	0	0	0	0	0	3733	957	33	0		0	COL6A3	2	238247766	Intron	INS	-	TCGA-50-6591-01A-11D-1753-08	58806213	238247766	4951607	28	138995											
BTD	686	broad.mit.edu	37	chr3	15686794	15686794	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacaggaaatcacagaGgccacggggatatttgagtt	14	6	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15686794	A	A	15686794	2	1	169	1	0	0	0	0	0	0	0	1	1560	991	35	4		4	BTD	3	15686794	Silent	SNP	G	TCGA-50-6591-01A-11D-1753-08		15686794	182335636	29	138996											
VPRBP	9730	broad.mit.edu	37	chr3	51504907	51504907	+	Intron	DEL	A	-	-													taataaaagtgtcttaaaagAaaaaaaaaagacccacactt							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51504907	-	-	51504907	6	5	169	0	1	1	0	1	0	0	0	0	17312	261	9	0		0	VPRBP	3	51504907	Intron	DEL	A	TCGA-50-6591-01A-11D-1753-08	35818113	51504907	146517523	30	138997											
SLC9A10	285335	broad.mit.edu	37	chr3	111870258	111870258	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatttctctcttgaattcCtttaacttcagctggtgtta	6	10	3	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111870258	G	G	111870258	1	3	169	0	1	0	0	0	0	0	0	0	14824	696	24	4		4	SLC9A10	3	111870258	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	60365351	111870258	86152172	31	138998											
RPN1	6184	broad.mit.edu	37	chr3	128350745	128350745	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaagaataggtagctgtGataaagtcctcatttctcac	8	8	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128350745	A	A	128350745	1	1	169	0	1	0	0	0	0	0	0	0	13718	1305	45	4		4	RPN1	3	128350745	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	16480487	128350745	69671685	32	138999											
PLCH1	23007	broad.mit.edu	37	chr3	155200026	155200026	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagtttcataaactgtgttCgttgcatgtttggtggtctc	11	6	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155200026	T	T	155200026	2	4	169	1	0	0	0	0	0	0	0	1	12132	871	31	4		4	PLCH1	3	155200026	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08	26849281	155200026	42822404	33	139000											
TBC1D19	55296	broad.mit.edu	37	chr4	26640461	26640461	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaactgatgaaccaggtatGtgaacaattttttctgaatg	10	5	1	4			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26640461	A	A	26640461	1	1	169	0	1	0	0	0	0	0	0	0	15726	1392	48	4		4	TBC1D19	4	26640461	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08		26640461	164513815	34	139001											
STIM2	57620	broad.mit.edu	37	chr4	27024674	27024674	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaaactattatcccccAccctccactccccacctttt	1	19	1	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27024674	C	C	27024674	1	2	169	0	1	0	0	0	0	0	0	0	15402	174	6	5		5	STIM2	4	27024674	3'UTR	SNP	A	TCGA-50-6591-01A-11D-1753-08	384213	27024674	164129602	35	139002											
KLB	152831	broad.mit.edu	37	chr4	39436044	39436049	+	In_Frame_Del	DEL	AGTTGT	-	-													tccagaggggatgagaaagaAgttgttctccgttctaccca							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39436049	-	-	39436044	7	5	169	1	0	1	0	1	0	0	0	0	8403	72	3	0	1046	0	KLB	4	39436044	In_Frame_Del	DEL	AGTTGT	TCGA-50-6591-01A-11D-1753-08	12411370	39436044	151718232	36	139003											
TRIML1	339976	broad.mit.edu	37	chr4	189067841	189067841	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgctgcattacaggcGcgagccatcacgcccggccc	11	16	1	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189067841	A	A	189067841	1	1	169	0	1	0	0	0	0	0	0	0	16675	1102	38	4		4	TRIML1	4	189067841	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	149631797	189067841	2086435	37	139004											
PDZD2	23037	broad.mit.edu	37	chr5	31983820	31983820	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcgtgtgtgtttgtttgtTtttgcagcccagcccatgcg	11	9	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31983820	C	C	31983820	1	2	169	0	1	0	0	0	0	0	0	0	11795	1856	64	5		5	PDZD2	5	31983820	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08		31983820	148931440	38	139005											
PAIP1	10605	broad.mit.edu	37	chr5	43536898	43536898	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtaaatacgtaaattagTtaaattaaaaaaaaaaacct	3	3	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43536898	C	C	43536898	1	2	169	0	1	0	0	0	0	0	0	0	11490	1740	60	5		5	PAIP1	5	43536898	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08	11553078	43536898	137378362	39	139006											
DDX4	54514	broad.mit.edu	37	chr5	55088620	55088620	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgttcagtgcaacttttcCagaggaaattcaaaggttaa	8	6	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55088620	T	T	55088620	3	4	169	1	0	0	0	0	1	0	0	0	4393	594	21	4	1557	4	DDX4	5	55088620	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	11551722	55088620	125826640	40	139007											
GPR98	84059	broad.mit.edu	37	chr5	90106986	90106986	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaactcttacccttatattCctagatggagaaagagaacg	7	9	1	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90106986	T	T	90106986	2	4	169	1	0	0	0	0	0	0	0	1	6787	854	30	4		4	GPR98	5	90106986	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08	35018366	90106986	90808274	41	139008											
FAM174A	345757	broad.mit.edu	37	chr5	99897996	99897996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacagcttatattccaacaCagtttcttcagttctgttta	4	9	3	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99897996	A	A	99897996	1	1	169	0	1	0	0	0	0	0	0	0	5540	493	17	3		3	FAM174A	5	99897996	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	9791010	99897996	81017264	42	139009											
APC	324	broad.mit.edu	37	chr5	112102062	112102062	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagtattgaagatgaaGctatggcttcttctggacag	12	5	2	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112102062	T	T	112102062	3	4	169	1	0	0	0	0	1	0	0	0	765	971	34	3	181	3	APC	5	112102062	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	12204066	112102062	68813198	43	139010											
HSPA9	3313	broad.mit.edu	37	chr5	137892191	137892191	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcctgctgaagagaggAtgctgcctgtctaatatttt	11	7	1	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137892191	T	T	137892191	3	4	169	1	0	0	0	0	1	0	0	0	7486	333	12	5	135	5	HSPA9	5	137892191	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	25790129	137892191	43023069	44	139011											
HAVCR2	84868	broad.mit.edu	37	chr5	156525921	156525922	+	Intron	DEL	AG	-	-													tctgtgtctctgctataaaaAgagagagagagagagagaga							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156525922	-	-	156525921	6	5	169	0	1	1	0	1	0	0	0	0	7040	87	3	0		0	HAVCR2	5	156525921	Intron	DEL	AG	TCGA-50-6591-01A-11D-1753-08	18633730	156525921	24389339	45	139012											
PROP1	5626	broad.mit.edu	37	chr5	177422865	177422865	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccagtggccgggtgtctctCaggcaacaggttgctgccga	14	13	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177422865	G	G	177422865	3	3	169	1	0	0	0	0	1	0	0	0	12663	835	29	4	622	4	PROP1	5	177422865	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	20896944	177422865	3492395	46	139013											
RASGEF1C	255426	broad.mit.edu	37	chr5	179545863	179545863	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacagggctcatgttcatgCcggctggaagagggaggagg	18	7	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179545863	T	T	179545863	3	4	169	1	0	0	0	0	1	0	0	0	13179	739	26	4	513	4	RASGEF1C	5	179545863	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	2122998	179545863	1369397	47	139014											
CAGE1	285782	broad.mit.edu	37	chr6	7370201	7370201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagaagactgtgcattttgGaggccagctgagaagctctt	12	9	1	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7370201	T	T	7370201	3	4	169	1	0	0	0	0	1	0	0	0	2598	1174	41	3	817	3	CAGE1	6	7370201	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08		7370201	163744866	48	139015											
HIST1H3G	8355	broad.mit.edu	37	chr6	26271322	26271322	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccccaccaagtaggcctcGcaggcctcctgcagggccat	11	17	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26271322	A	A	26271322	2	1	169	1	0	0	0	0	0	0	0	1	7228	1079	38	4		4	HIST1H3G	6	26271322	Silent	SNP	G	TCGA-50-6591-01A-11D-1753-08	18901121	26271322	144843745	49	139016											
HIST1H2BJ	8970	broad.mit.edu	37	chr6	27100386	27100386	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccggtgtcagggtggacCtgcttcagaaccttgtacac	12	11	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27100386	G	G	27100386	3	3	169	1	0	0	0	0	1	0	0	0	7216	680	24	4	240	4	HIST1H2BJ	6	27100386	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	829064	27100386	144014681	50	139017											
MOG	4340	broad.mit.edu	37	chr6	29635519	29635519	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggtcccgttcttggaccGtctctccctctcaataccct	6	16	3	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29635519	A	A	29635519	1	1	169	0	1	0	0	0	0	0	0	0	9787	1160	40	4		4	MOG	6	29635519	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	2535133	29635519	141479548	51	139018											
DST	667	broad.mit.edu	37	chr6	56325089	56325090	+	Intron	DNP	GC	AT	AT													acaagacatttcaaaatattGctcctgtaccatgatattcc							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	56325090	AT	AT	56325089	1	1	169	0	1	0	0	0	0	0	0	0	4823	1334	46	4		4	DST	6	56325089	Intron	DNP	GC	TCGA-50-6591-01A-11D-1753-08	26689570	56325089	114789978	52	139019											
SH3BGRL2	83699	broad.mit.edu	37	chr6	80406173	80406173	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataattgtttgcttttgttgGtttattttctgcttcccttt	6	6	1	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80406173	C	C	80406173	1	2	169	0	1	0	0	0	0	0	0	0	14355	1276	44	4		4	SH3BGRL2	6	80406173	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	24081084	80406173	90708894	53	139020											
MED23	9439	broad.mit.edu	37	chr6	131948487	131948487	+	Intron	DEL	G	-	-													aagaaaaaaaaaaaaaaaaaGaagaggccaaaaatcatcag							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131948487	-	-	131948487	6	5	169	0	1	1	0	1	0	0	0	0	9534	957	33	0		0	MED23	6	131948487	Intron	DEL	G	TCGA-50-6591-01A-11D-1753-08	51542314	131948487	39166580	54	139021											
TBP	6908	broad.mit.edu	37	chr6	170881381	170881381	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtacccttgcctcccccAcccccttctttttttttttt	2	17	1	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170881381	C	C	170881381	1	2	169	0	1	0	0	0	0	0	0	0	15766	174	6	5		5	TBP	6	170881381	3'UTR	SNP	A	TCGA-50-6591-01A-11D-1753-08	38932894	170881381	233686	55	139022											
PLEKHA8	84725	broad.mit.edu	37	chr7	30092277	30092277	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaccaaataacgaccttctgg							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30092277	-	-	30092277	6	5	169	0	1	1	0	1	0	0	0	0	12157	957	33	0		0	PLEKHA8	7	30092277	Intron	DEL	G	TCGA-50-6591-01A-11D-1753-08		30092277	129046386	56	139023											
EEPD1	80820	broad.mit.edu	37	chr7	36324335	36324335	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctatgggacgcggctgccgGcatggagctgagagacgcgg	18	11	0	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36324335	A	A	36324335	3	1	169	1	0	0	0	0	1	0	0	0	4972	1203	42	4	1096	4	EEPD1	7	36324335	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	6232058	36324335	122814328	57	139024											
COBL	23242	broad.mit.edu	37	chr7	51258724	51258724	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaacctcagggctcacacGcacaacagctttttgtgtcc	9	13	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51258724	A	A	51258724	3	1	169	1	0	0	0	0	1	0	0	0	3685	1087	38	4	3317	4	COBL	7	51258724	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	14934389	51258724	107879939	58	139025											
EGFR	1956	broad.mit.edu	37	chr7	55242490	55242507	+	In_Frame_Del	DEL	AAAGCCAACAAGGAAATC	-	-													taagagaagcaacatctccgAaagccaacaaggaaatcctc							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242507	-	-	55242490	7	5	169	1	0	1	0	1	0	0	0	0	5007	247	9	0	2598	0	EGFR	7	55242490	In_Frame_Del	DEL	AAAGCCAACAAGGAAATC	TCGA-50-6591-01A-11D-1753-08	3983766	55242490	103896173	59	139026											
EGFR	1956	broad.mit.edu	37	chr7	55259439	55259439	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actacttggaggaccgtcgcTtggtgcaccgcgacctggca	13	13	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259439	G	G	55259439	3	3	169	1	0	0	0	0	1	0	0	0	5007	1606	56	5	2843	5	EGFR	7	55259439	Missense_Mutation	SNP	T	TCGA-50-6591-01A-11D-1753-08	16949	55259439	103879224	60	139027											
GATS	352954	broad.mit.edu	37	chr7	99821621	99821621	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataggctgggagctggagaAgctgccaccgccggacacca	14	12	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99821621	C	C	99821621	3	2	169	1	0	0	0	0	1	0	0	0	6326	72	3	5	204	5	GATS	7	99821621	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	44562182	99821621	59317042	61	139028											
MUC17	140453	broad.mit.edu	37	chr7	100681373	100681373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactccattcacaagtatgCctgtcagcaccatgccggta	8	14	2	0	rs144624588		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100681373	A	A	100681373	3	1	169	1	0	0	0	0	1	0	0	0	10068	739	26	3	6686	3	MUC17	7	100681373	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	859752	100681373	58457290	62	139029											
BRAF	673	broad.mit.edu	37	chr7	140434574	140434575	+	Intron	INS	-	A	A													caatagaggcgagaatctacINSaaaaaaaaaaagaaaaaaaa					rs151306633		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140434575	A	A	140434574	6	5	169	0	1	1	1	0	0	0	0	0	1505	493	17	0		0	BRAF	7	140434574	Intron	INS	-	TCGA-50-6591-01A-11D-1753-08	39753201	140434574	18704089	63	139030											
GALNT11	63917	broad.mit.edu	37	chr7	151817828	151817828	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttctgctttgagaccTtacagaatcaatatgtggaa	8	7	3	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151817828	G	G	151817828	1	3	169	0	1	0	0	0	0	0	0	0	6271	1624	56	5		5	GALNT11	7	151817828	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08	11383254	151817828	7320835	64	139031											
RNF32	140545	broad.mit.edu	37	chr7	156468320	156468320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccaaaatagatggtcaggCtcgagagcgcttccctgcaa	10	11	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156468320	A	A	156468320	1	1	169	0	1	0	0	0	0	0	0	0	13599	812	28	3		3	RNF32	7	156468320	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	4650492	156468320	2670343	65	139032											
ZNF250	58500	broad.mit.edu	37	chr8	146112218	146112218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaaaaagatcaggcataCacttaccccatggacaagat	6	9	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146112218	A	A	146112218	1	1	169	0	1	0	0	0	0	0	0	0	17921	493	17	3		3	ZNF250	8	146112218	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08		146112218	251804	66	139033											
DOCK8	81704	broad.mit.edu	37	chr9	340238	340238	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgctgcccgtgaaaccCtttcctgaaaaccggacacg	9	13	0	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	340238	G	G	340238	2	3	169	1	0	0	0	0	0	0	0	1	4733	668	24	4		4	DOCK8	9	340238	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08		340238	140873193	67	139034											
PTPRD	5789	broad.mit.edu	37	chr9	8521531	8521531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgggatagagaatcttGgtgggacacggcgaactgga	18	5	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8521531	T	T	8521531	3	4	169	1	0	0	0	0	1	0	0	0	12907	1348	47	2	5207	2	PTPRD	9	8521531	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	8181293	8521531	132691900	68	139035											
TRPM6	140803	broad.mit.edu	37	chr9	77502691	77502691	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccgggggcgcagatctagcGaatcgcctaaggtccttgtt	14	11	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77502691	A	A	77502691	1	1	169	0	1	0	0	0	0	0	0	0	16715	1073	37	4		4	TRPM6	9	77502691	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	68981160	77502691	63710740	69	139036											
KIAA1529	57653	broad.mit.edu	37	chr9	100070197	100070197	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgccctggggtgccgcCtcgaggccagacgtcgtccc	14	17	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100070197	T	T	100070197	1	4	169	0	1	0	0	0	0	0	0	0	8310	696	24	4		4	KIAA1529	9	100070197	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	22567506	100070197	41143234	70	139037											
COL27A1	85301	broad.mit.edu	37	chr9	117062395	117062395	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaatggcaggtctcttcGgacccaaggtatggactccc	12	12	1	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117062395	A	A	117062395	3	1	169	1	0	0	0	0	1	0	0	0	3717	1117	39	4	4828	4	COL27A1	9	117062395	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	16992198	117062395	24151036	71	139038											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123177476	123177476	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaatttaaagtctgaacCcccaacaaattgaataattt	3	7	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123177476	T	T	123177476	1	4	169	0	1	0	0	0	0	0	0	0	3176	638	22	4		4	CDK5RAP2	9	123177476	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	6115081	123177476	18035955	72	139039											
PTGS1	5742	broad.mit.edu	37	chr9	125145998	125145998	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaccccacctggggcgatGagcagcttttccagacgacc	11	15	0	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125145998	A	A	125145998	3	1	169	1	0	0	0	0	1	0	0	0	12861	1291	45	4	1003	4	PTGS1	9	125145998	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	1968522	125145998	16067433	73	139040											
OR1L1	26737	broad.mit.edu	37	chr9	125424498	125424498	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgactaatcagctcatcttCtgtgcctcaaatgtcatcca	5	13	6	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125424498	A	A	125424498	3	1	169	1	0	0	0	0	1	0	0	0	11057	912	32	3	506	3	OR1L1	9	125424498	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	278500	125424498	15788933	74	139041											
KIF11	3832	broad.mit.edu	37	chr10	94369049	94369064	+	Intron	DEL	GAGAGAGAGAGAGTGT	-	-													gagagagagagagagagagaGagagagagagagtgtgtgtg					rs57826875		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94369064	-	-	94369049	6	5	169	0	1	1	0	1	0	0	0	0	8342	957	33	0		0	KIF11	10	94369049	Intron	DEL	GAGAGAGAGAGAGTGT	TCGA-50-6591-01A-11D-1753-08		94369049	41165698	75	139042											
CYP17A1	1586	broad.mit.edu	37	chr10	104597001	104597001	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctggggaggaatggcaGgctgcccaccaggggcaggg	20	9	1	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104597001	A	A	104597001	2	1	169	1	0	0	0	0	0	0	0	1	4180	991	35	4		4	CYP17A1	10	104597001	Silent	SNP	G	TCGA-50-6591-01A-11D-1753-08	10227952	104597001	30937746	76	139043											
MUC5B	727897	broad.mit.edu	37	chr11	1262717	1262717	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacgataagatcagggccgCtggagggcacttatgccagc	13	11	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1262717	T	T	1262717	3	4	169	1	0	0	0	0	1	0	0	0	10073	797	28	4	4738	4	MUC5B	11	1262717	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08		1262717	133743799	77	139044											
LMO2	4005	broad.mit.edu	37	chr11	33880984	33880984	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaggaggtatctgtcaCctacacagaaatgcttctga	10	8	3	4			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33880984	G	G	33880984	3	3	169	1	0	0	0	0	1	0	0	0	8926	507	18	4	85	4	LMO2	11	33880984	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	32618267	33880984	101125532	78	139045											
MADD	8567	broad.mit.edu	37	chr11	47330840	47330840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattctatgcaggcaaagagCgttctactttatgggaccaa	9	8	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47330840	A	A	47330840	3	1	169	1	0	0	0	0	1	0	0	0	9240	768	27	3	4042	3	MADD	11	47330840	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	13449856	47330840	87675676	79	139046											
MAP4K2	5871	broad.mit.edu	37	chr11	64566286	64566286	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactcaactcttcctttccCagtagtgtccactcttcctc	3	18	3	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64566286	A	A	64566286	2	1	169	1	0	0	0	0	0	0	0	1	9352	581	21	2		2	MAP4K2	11	64566286	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08	17235446	64566286	70440230	80	139047											
GAL3ST3	89792	broad.mit.edu	37	chr11	65811095	65811095	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagtcatgtgcttggggCgcggcggcgagttccgcaga	16	12	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65811095	T	T	65811095	3	4	169	1	0	0	0	0	1	0	0	0	6261	768	27	4	1120	4	GAL3ST3	11	65811095	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	1244809	65811095	69195421	81	139048											
KLC2	64837	broad.mit.edu	37	chr11	66034357	66034358	+	Frame_Shift_Ins	INS	-	TC	TC													ccacagcctggaggcacaggINStctctctgacagccgcactc							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	66034358	TC	TC	66034357	7	5	169	1	0	1	1	0	0	0	0	0	8405	1261	44	0	1857	0	KLC2	11	66034357	Frame_Shift_Ins	INS	-	TCGA-50-6591-01A-11D-1753-08	223262	66034357	68972159	82	139049											
TMEM135	65084	broad.mit.edu	37	chr11	86782702	86782702	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaactgattacctgtcccCtaccccaactataatttttt	4	13	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86782702	T	T	86782702	1	4	169	0	1	0	0	0	0	0	0	0	16174	696	24	4		4	TMEM135	11	86782702	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	20748345	86782702	48223814	83	139050											
TTC12	54970	broad.mit.edu	37	chr11	113233252	113233252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttattggttacaacccCtgaaatgtacagaagtctcc	6	11	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113233252	A	A	113233252	1	1	169	0	1	0	0	0	0	0	0	0	16805	696	24	2		2	TTC12	11	113233252	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	26450550	113233252	21773264	84	139051											
SCNN1A	6337	broad.mit.edu	37	chr12	6483790	6483790	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaagagctctcggtaggAgcggtggaactcgatcaggg	16	9	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6483790	C	C	6483790	3	2	169	1	0	0	0	0	1	0	0	0	14040	304	11	5	1897	5	SCNN1A	12	6483790	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08		6483790	127368105	85	139052											
TPI1	7167	broad.mit.edu	37	chr12	6978046	6978046	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggtggtttgtgctccccCtactgcctatatcgacttcg	10	12	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6978046	T	T	6978046	3	4	169	1	0	0	0	0	1	0	0	0	16527	681	24	4	251	4	TPI1	12	6978046	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	494256	6978046	126873849	86	139053											
SLCO1C1	53919	broad.mit.edu	37	chr12	20885798	20885798	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtgttagtacactcaaatCttttttagagattcacaaaa	5	6	3	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20885798	A	A	20885798	1	1	169	0	1	0	0	0	0	0	0	0	14839	928	32	3		3	SLCO1C1	12	20885798	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	13907752	20885798	112966097	87	139054											
C12orf35	55196	broad.mit.edu	37	chr12	32138804	32138805	+	Missense_Mutation	DNP	CC	GT	GT													tgctggagtttaaattatgtCcagatatcttactaaagaat							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	32138805	GT	GT	32138804	3	3	169	1	0	0	0	0	1	0	0	0	1695	855	30	4	4917	4	C12orf35	12	32138804	Missense_Mutation	DNP	CC	TCGA-50-6591-01A-11D-1753-08	11253006	32138804	101713091	88	139055											
FRY	10129	broad.mit.edu	37	chr13	32868709	32868709	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagatcagggagtgcaggTgactctgctatttcttttag	13	7	3	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32868709	G	G	32868709	5	3	169	1	0	0	0	0	0	0	1	0	6123	1710	59	5	9023	5	FRY	13	32868709	Splice_Site	SNP	T	TCGA-50-6591-01A-11D-1753-08		32868709	82301169	89	139056											
LHFP	10186	broad.mit.edu	37	chr13	39918267	39918267	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggtttcttattgcttccaGtgtgtgggttctgaaacacc	11	8	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39918267	C	C	39918267	1	2	169	0	1	0	0	0	0	0	0	0	8835	1044	36	4		4	LHFP	13	39918267	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	7049558	39918267	75251611	90	139057											
SLC25A15	10166	broad.mit.edu	37	chr13	41382537	41382537	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtcacatcagctgttcttGagacaaaataccatttgcta	6	9	3	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41382537	A	A	41382537	1	1	169	0	1	0	0	0	0	0	0	0	14591	1305	45	4		4	SLC25A15	13	41382537	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	1464270	41382537	73787341	91	139058											
PCDH8	5100	broad.mit.edu	37	chr13	53422137	53422137	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccactgccgcaccctcGgacacctctaccgggatctg	10	18	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53422137	A	A	53422137	2	1	169	1	0	0	0	0	0	0	0	1	11611	1103	39	4		4	PCDH8	13	53422137	Silent	SNP	G	TCGA-50-6591-01A-11D-1753-08	12039600	53422137	61747741	92	139059											
MYCBP2	23077	broad.mit.edu	37	chr13	77644856	77644856	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgatgttgcctttacataGaaaaagaaaaaaaaaaaaaa	5	4	1	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77644856	A	A	77644856	1	1	169	0	1	0	0	0	0	0	0	0	10112	957	33	4		4	MYCBP2	13	77644856	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	24222719	77644856	37525022	93	139060											
MYCBP2	23077	broad.mit.edu	37	chr13	77655572	77655572	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctttcttaccccaagatctCgggaattgtccacgtgaaca	8	12	2	2	rs150342167		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77655572	T	T	77655572	3	4	169	1	0	0	0	0	1	0	0	0	10112	884	31	4	2704	4	MYCBP2	13	77655572	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	10716	77655572	37514306	94	139061											
ITGBL1	9358	broad.mit.edu	37	chr13	102235755	102235755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagggggaggtggggcttGttaatgggtaaaaaaaaaaa	17	1	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102235755	T	T	102235755	1	4	169	0	1	0	0	0	0	0	0	0	7972	1392	48	3		3	ITGBL1	13	102235755	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	24580183	102235755	12934123	95	139062											
IL25	64806	broad.mit.edu	37	chr14	23844699	23844699	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttgttcaaagttacacaGcaagtgggttcagaactgag	11	7	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23844699	A	A	23844699	1	1	169	0	1	0	0	0	0	0	0	0	7748	986	34	4		4	IL25	14	23844699	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08		23844699	83504841	96	139063											
FANCM	57697	broad.mit.edu	37	chr14	45642257	45642257	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attactttttaaataattaaGgctcaagaatcaaccactgg	5	7	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45642257	C	C	45642257	5	2	169	1	0	0	0	0	0	0	1	0	5728	1014	35	4	2210	4	FANCM	14	45642257	Splice_Site	SNP	G	TCGA-50-6591-01A-11D-1753-08	21797558	45642257	61707283	97	139064											
MAX	4149	broad.mit.edu	37	chr14	65568195	65568195	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaatagtacgatctctttTtctctctgaccccaaaaagg	6	10	3	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65568195	C	C	65568195	1	2	169	0	1	0	0	0	0	0	0	0	9431	1856	64	5		5	MAX	14	65568195	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08	19925938	65568195	41781345	98	139065											
YLPM1	56252	broad.mit.edu	37	chr14	75265095	75265095	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcagaatggaagacacacGggataaaggtctagtaaaca	11	6	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75265095	A	A	75265095	3	1	169	1	0	0	0	0	1	0	0	0	17613	1116	39	4	3113	4	YLPM1	14	75265095	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	9696900	75265095	32084445	99	139066											
DICER1	23405	broad.mit.edu	37	chr14	95598834	95598834	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcccctgcacaacttgatAaaataattttttattaccag	3	9	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95598834	G	G	95598834	1	3	169	0	1	0	0	0	0	0	0	0	4561	377	13	5		5	DICER1	14	95598834	Intron	SNP	A	TCGA-50-6591-01A-11D-1753-08	20333739	95598834	11750706	100	139067											
DLK1	8788	broad.mit.edu	37	chr14	101200790	101200790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacgagtgtctgtgcaagCccgagttcacaggtctcacc	11	13	3	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101200790	A	A	101200790	3	1	169	1	0	0	0	0	1	0	0	0	4604	739	26	3	727	3	DLK1	14	101200790	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	5601956	101200790	6148750	101	139068											
DYNC1H1	1778	broad.mit.edu	37	chr14	102453876	102453876	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaccataagacattctcGgaaatcttgaacagagtcca	7	9	2	4	rs17512082	byFrequency;by1000genomes	TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102453876	T	T	102453876	2	4	169	1	0	0	0	0	0	0	0	1	4881	1103	39	1		1	DYNC1H1	14	102453876	Silent	SNP	G	TCGA-50-6591-01A-11D-1753-08	1253086	102453876	4895664	102	139069											
UBE3A	7337	broad.mit.edu	37	chr15	25584472	25584472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacacttagaattaaatGctcctatttttagattgtat	4	5	0	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25584472	T	T	25584472	1	4	169	0	1	0	0	0	0	0	0	0	17005	1334	46	3		3	UBE3A	15	25584472	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08		25584472	76946920	103	139070											
GABRB3	2562	broad.mit.edu	37	chr15	26792930	26792930	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtctttgaaaaatcaaGtacagtcactcagttaacat	6	7	4	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26792930	A	A	26792930	1	1	169	0	1	0	0	0	0	0	0	0	6228	1044	36	4		4	GABRB3	15	26792930	3'UTR	SNP	G	TCGA-50-6591-01A-11D-1753-08	1208458	26792930	75738462	104	139071											
OCA2	4948	broad.mit.edu	37	chr15	28235620	28235620	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaacatggacgtggcaTataaaatagtgaaaaaacca	8	6	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28235620	C	C	28235620	1	2	169	0	1	0	0	0	0	0	0	0	10910	1421	49	5		5	OCA2	15	28235620	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08	1442690	28235620	74295772	105	139072											
PAK6	56924	broad.mit.edu	37	chr15	40558063	40558063	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagtggtgcggggcagcgcGatgcctgtggatggctacat	17	9	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40558063	A	A	40558063	2	1	169	1	0	0	0	0	0	0	0	1	11498	1045	37	4		4	PAK6	15	40558063	Silent	SNP	G	TCGA-50-6591-01A-11D-1753-08	12322443	40558063	61973329	106	139073											
SPTBN5	51332	broad.mit.edu	37	chr15	42168342	42168342	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccacgtgtctgcgggtGgcgagtagctcgctctcagc	14	14	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42168342	T	T	42168342	2	4	169	1	0	0	0	0	0	0	0	1	15240	1335	47	2		2	SPTBN5	15	42168342	Silent	SNP	G	TCGA-50-6591-01A-11D-1753-08	1610279	42168342	60363050	107	139074											
NEDD4	4734	broad.mit.edu	37	chr15	56141027	56141027	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaggccctagatcattggAagtatcaagtgatgtctttc	9	7	3	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56141027	C	C	56141027	3	2	169	1	0	0	0	0	1	0	0	0	10405	246	9	5	1357	5	NEDD4	15	56141027	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	13972685	56141027	46390365	108	139075											
PTPN9	5780	broad.mit.edu	37	chr15	75798091	75798092	+	Missense_Mutation	DNP	CT	GG	GG													catagattccttgcttttgcCtggcattaacatagtccacc							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	75798092	GG	GG	75798091	3	3	169	1	0	0	0	0	1	0	0	0	12902	681	24	4	916	4	PTPN9	15	75798091	Missense_Mutation	DNP	CT	TCGA-50-6591-01A-11D-1753-08	19657064	75798091	26733301	109	139076											
HMG20A	10363	broad.mit.edu	37	chr15	77770862	77770862	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcccttgcctggtaagtcctCctgcctgagaactgtcagtg	11	13	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77770862	T	T	77770862	1	4	169	0	1	0	0	0	0	0	0	0	7288	870	30	4		4	HMG20A	15	77770862	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	1972771	77770862	24760530	110	139077											
PRC1	9055	broad.mit.edu	37	chr15	91527271	91527271	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatggctcaacatgtaactCgctgcacagagtgttcagct	9	10	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91527271	A	A	91527271	4	1	169	1	0	0	0	0	0	1	0	0	12552	893	31	3	1670	3	PRC1	15	91527271	Nonsense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	13756409	91527271	11004121	111	139078											
MEFV	4210	broad.mit.edu	37	chr16	3294399	3294399	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggggaagaggagggaagtGaggggctctgggctatgtgg	22	4	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3294399	T	T	3294399	1	4	169	0	1	0	0	0	0	0	0	0	9552	1305	45	3		3	MEFV	16	3294399	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08		3294399	87060354	112	139079											
ARHGAP17	55114	broad.mit.edu	37	chr16	24931301	24931301	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctccaggttctccttggGccgtgcagaaggccaggtcc	14	14	1	1	rs34517660		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24931301	A	A	24931301	1	1	169	0	1	0	0	0	0	0	0	0	869	1218	42	4		4	ARHGAP17	16	24931301	3'UTR	SNP	G	TCGA-50-6591-01A-11D-1753-08	21636902	24931301	65423452	113	139080											
KIF22	3835	broad.mit.edu	37	chr16	29809711	29809711	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtttgatgccttctatGgggagaggagtactcagcag	15	7	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29809711	C	C	29809711	3	2	169	1	0	0	0	0	1	0	0	0	8360	1348	47	4	293	4	KIF22	16	29809711	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	4878410	29809711	60545042	114	139081											
SRCAP	10847	broad.mit.edu	37	chr16	30736029	30736029	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcttctccagtgggcCcagccccagctcacacgctg	9	19	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30736029	T	T	30736029	3	4	169	1	0	0	0	0	1	0	0	0	15253	623	22	4	5374	4	SRCAP	16	30736029	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	926318	30736029	59618724	115	139082											
SPEM1	374768	broad.mit.edu	37	chr17	7324082	7324082	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagccctaaattagccccttCccttcttgctcgcccctctc	4	20	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7324082	A	A	7324082	1	1	169	0	1	0	0	0	0	0	0	0	15155	870	30	3		3	SPEM1	17	7324082	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08		7324082	73871128	116	139083											
TP53	7157	broad.mit.edu	37	chr17	7579526	7579526	+	Frame_Shift_Del	DEL	A	-	-													ctggacctgggtcttcagtgAaccattgttcaatatcgtcc							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7579526	-	-	7579526	7	5	169	1	0	1	0	1	0	0	0	0	16505	246	9	0	1141	0	TP53	17	7579526	Frame_Shift_Del	DEL	A	TCGA-50-6591-01A-11D-1753-08	255444	7579526	73615684	117	139084											
ARHGEF15	22899	broad.mit.edu	37	chr17	8221672	8221672	+	Intron	DEL	G	-	-													aatcccagggccacagagcaGggggcccagtcacccttcct							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8221672	-	-	8221672	6	5	169	0	1	1	0	1	0	0	0	0	900	1015	35	0		0	ARHGEF15	17	8221672	Intron	DEL	G	TCGA-50-6591-01A-11D-1753-08	642146	8221672	72973538	118	139085											
KRT25	147183	broad.mit.edu	37	chr17	38906740	38906740	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctggccctcggtctcggttCtgacctggtgcagctgctcc	12	15	3	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38906740	T	T	38906740	3	4	169	1	0	0	0	0	1	0	0	0	8533	913	32	4	297	4	KRT25	17	38906740	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	30685068	38906740	42288470	119	139086											
KRTAP1-5	83895	broad.mit.edu	37	chr17	39183256	39183256	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgcaggtcccactggttGagaagctgggaaatccgcag	14	10	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39183256	T	T	39183256	4	4	169	1	0	0	0	0	0	1	0	0	8575	1294	45	3	376	3	KRTAP1-5	17	39183256	Nonsense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	276516	39183256	42011954	120	139087											
DBF4B	80174	broad.mit.edu	37	chr17	42808230	42808230	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgctcccagctttccgagGgacataaccccaagacataa	7	14	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42808230	A	A	42808230	1	1	169	0	1	0	0	0	0	0	0	0	4282	1247	43	4		4	DBF4B	17	42808230	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	3624974	42808230	38386980	121	139088											
TOB1	10140	broad.mit.edu	37	chr17	48940623	48940623	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgtggtggtggtggTggcggtggcggctgggctgg	24	6	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48940623	C	C	48940623	2	2	169	1	0	0	0	0	0	0	0	1	16470	1683	59	5		5	TOB1	17	48940623	Silent	SNP	T	TCGA-50-6591-01A-11D-1753-08	6132393	48940623	32254587	122	139089											
BZRAP1	9256	broad.mit.edu	37	chr17	56389823	56389823	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaaggcacggcaggaggctCgcccaggccctccggtgatg	16	13	0	1	rs146622872	byFrequency	TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56389823	A	A	56389823	4	1	169	1	0	0	0	0	0	1	0	0	1587	893	31	3	3274	3	BZRAP1	17	56389823	Nonsense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	7449200	56389823	24805387	123	139090											
USP32	84669	broad.mit.edu	37	chr17	58303332	58303332	+	Intron	DEL	G	-	-													tcaaaaaaaaaaaaaaaaaaGaaaagaaaagaaagacctat							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58303332	-	-	58303332	6	5	169	0	1	1	0	1	0	0	0	0	17190	957	33	0		0	USP32	17	58303332	Intron	DEL	G	TCGA-50-6591-01A-11D-1753-08	1913509	58303332	22891878	124	139091											
H3F3B	3021	broad.mit.edu	37	chr17	73774708	73774708	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccgtatccggcgagccaActggatgtctttgggcatga	12	12	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73774708	C	C	73774708	3	2	169	1	0	0	0	0	1	0	0	0	7000	40	2	5	35	5	H3F3B	17	73774708	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	15471376	73774708	7420502	125	139092											
CBX4	8535	broad.mit.edu	37	chr17	77807808	77807808	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggcagttcgcggtgaCgtcggtgataattatattcc	14	7	0	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77807808	T	T	77807808	3	4	169	1	0	0	0	0	1	0	0	0	2746	536	19	4	53	4	CBX4	17	77807808	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	4033100	77807808	3387402	126	139093											
CEP192	55125	broad.mit.edu	37	chr18	13113744	13113744	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtaaattattgtatgtaTtttaaaaacagaaagggaaa	7	1	0	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13113744	G	G	13113744	1	3	169	0	1	0	0	0	0	0	0	0	3281	1508	52	5		5	CEP192	18	13113744	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08		13113744	64963504	127	139094											
DSG4	147409	broad.mit.edu	37	chr18	28993383	28993383	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgagcaatagtagcacgaCtgagggttgtatgggacctg	14	7	0	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28993383	T	T	28993383	3	4	169	1	0	0	0	0	1	0	0	0	4819	565	20	4	3131	4	DSG4	18	28993383	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	15879639	28993383	49083865	128	139095											
ZNF568	374900	broad.mit.edu	37	chr19	37441720	37441720	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaaaattcatactggagaGaaaccattcaaatgtaatga	7	5	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37441720	C	C	37441720	3	2	169	1	0	0	0	0	1	0	0	0	18126	933	33	4	1683	4	ZNF568	19	37441720	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08		37441720	21687263	129	139096											
CLC	1178	broad.mit.edu	37	chr19	40222091	40222091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgcaccatcttcacagCctcaggcttgattctatggt	7	13	4	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40222091	A	A	40222091	3	1	169	1	0	0	0	0	1	0	0	0	3487	739	26	3	74	3	CLC	19	40222091	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	2780371	40222091	18906892	130	139097											
CCDC106	29903	broad.mit.edu	37	chr19	56164048	56164048	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggacgacgagacgctcaAgaaggtgcaggcgctcaaga	14	11	2	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56164048	G	G	56164048	3	3	169	1	0	0	0	0	1	0	0	0	2767	72	3	5	797	5	CCDC106	19	56164048	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	15941957	56164048	2964935	131	139098											
TRIM28	10155	broad.mit.edu	37	chr19	59059582	59059582	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcctggctggtgggttccAggcaggtggttcccaatacc	14	12	0	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59059582	T	T	59059582	1	4	169	0	1	0	0	0	0	0	0	0	16626	203	7	5		5	TRIM28	19	59059582	Intron	SNP	A	TCGA-50-6591-01A-11D-1753-08	2895534	59059582	69401	132	139099											
BCAS1	8537	broad.mit.edu	37	chr20	52645352	52645352	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtacgtcctggtacaggcCgagagagcatcaagaaaaaa	12	9	1	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52645352	T	T	52645352	3	4	169	1	0	0	0	0	1	0	0	0	1355	652	23	4	1488	4	BCAS1	20	52645352	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08		52645352	10380168	133	139100											
SLCO4A1	28231	broad.mit.edu	37	chr20	61299189	61299189	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccctgtgtgcggctcggAcggcctcatgtacttctcac	11	15	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61299189	G	G	61299189	3	3	169	1	0	0	0	0	1	0	0	0	14843	275	10	5	1591	5	SLCO4A1	20	61299189	Missense_Mutation	SNP	A	TCGA-50-6591-01A-11D-1753-08	8653837	61299189	1726331	134	139101											
ARFGAP1	55738	broad.mit.edu	37	chr20	61914090	61914090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgagagacagtcctggaCctgagtctgtgggccctgag	14	10	1	4			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61914090	A	A	61914090	1	1	169	0	1	0	0	0	0	0	0	0	851	522	18	3		3	ARFGAP1	20	61914090	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	614901	61914090	1111430	135	139102											
PTK6	5753	broad.mit.edu	37	chr20	62163804	62163804	+	Intron	DEL	G	-	-													gtgtgtgtgtgtgtagacgtGgggggggggtgtgcacttta							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62163804	-	-	62163804	6	5	169	0	1	1	0	1	0	0	0	0	12870	1363	47	0		0	PTK6	20	62163804	Intron	DEL	G	TCGA-50-6591-01A-11D-1753-08	249714	62163804	861716	136	139103											
BAGE2	85319	broad.mit.edu	37	chr21	11097627	11097627	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcttggagcagctggGcagacaatgccagaaaaacc	13	11	0	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11097627	C	C	11097627	3	2	169	1	0	0	0	0	1	0	0	0	1297	1203	42	4	306	4	BAGE2	21	11097627	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08		11097627	37032268	137	139104											
ATP5O	539	broad.mit.edu	37	chr21	35275766	35275766	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaacataatatgatctgttCtggaagctttttattgttgc	8	5	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35275766	T	T	35275766	1	4	169	0	1	0	0	0	0	0	0	0	1166	928	32	4		4	ATP5O	21	35275766	3'UTR	SNP	C	TCGA-50-6591-01A-11D-1753-08	24178139	35275766	12854129	138	139105											
TMPRSS2	7113	broad.mit.edu	37	chr21	42852432	42852432	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtccctgcaggccgcccgCccgtagttctcgttccagtc	10	17	1	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42852432	A	A	42852432	2	1	169	1	0	0	0	0	0	0	0	1	16370	726	26	3		3	TMPRSS2	21	42852432	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08	7576666	42852432	5277463	139	139106											
C21orf57	54059	broad.mit.edu	37	chr21	47707050	47707050	+	Intron	DEL	T	-	-													ttcatgaggtaaaaaaaaaaTgttcctcttcttgtctagcc					rs67358539		TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47707050	-	-	47707050	6	5	169	0	1	1	0	1	0	0	0	0	2150	1479	51	0		0	C21orf57	21	47707050	Intron	DEL	T	TCGA-50-6591-01A-11D-1753-08	4854618	47707050	422845	140	139107											
MSL3	10943	broad.mit.edu	37	chrX	11781891	11781891	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaatctcttctttttaatCctcccagtgttgacctttgt	4	11	3	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11781891	A	A	11781891	1	1	169	0	1	0	0	0	0	0	0	0	9973	870	30	3		3	MSL3	23	11781891	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08		11781891	143488669	141	139108											
FRMPD4	9758	broad.mit.edu	37	chrX	12738704	12738704	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcatgccttcagcttggtCtcaacatcctgaagctgatc	9	12	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12738704	A	A	12738704	1	1	169	0	1	0	0	0	0	0	0	0	6119	928	32	3		3	FRMPD4	23	12738704	3'UTR	SNP	C	TCGA-50-6591-01A-11D-1753-08	956813	12738704	142531856	142	139109											
GNL3L	54552	broad.mit.edu	37	chrX	54578810	54578810	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agatcgttaaggaaatgaccGaggtctttgacatcgaggat	12	6	1	3			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54578810	A	A	54578810	3	1	169	1	0	0	0	0	1	0	0	0	6602	1059	37	4	1313	4	GNL3L	23	54578810	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	41840106	54578810	100691750	143	139110											
USP51	158880	broad.mit.edu	37	chrX	55513806	55513806	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctgggaatcgaatgtggCacaagagccaggcaagtcca	13	9	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55513806	T	T	55513806	3	4	169	1	0	0	0	0	1	0	0	0	17210	710	25	4	572	4	USP51	23	55513806	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	934996	55513806	99756754	144	139111											
KIF4A	24137	broad.mit.edu	37	chrX	69549130	69549130	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgaacaagattaagaaGttttctcaagattgatgact	8	4	1	6			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69549130	A	A	69549130	1	1	169	0	1	0	0	0	0	0	0	0	8373	1044	36	4		4	KIF4A	23	69549130	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	14035324	69549130	85721430	145	139112											
DLG3	1741	broad.mit.edu	37	chrX	69712171	69712171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcaaggcctttcctgccCtcttgctggtatttctttct	8	12	3	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69712171	A	A	69712171	1	1	169	0	1	0	0	0	0	0	0	0	4596	696	24	2		2	DLG3	23	69712171	Intron	SNP	C	TCGA-50-6591-01A-11D-1753-08	163041	69712171	85558389	146	139113											
FOXO4	4303	broad.mit.edu	37	chrX	70321392	70321392	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttctatgatagcaccacctCcagtcatggcaagtgccccc	7	15	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70321392	T	T	70321392	3	4	169	1	0	0	0	0	1	0	0	0	6085	855	30	4	1318	4	FOXO4	23	70321392	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	609221	70321392	84949168	147	139114											
TAF1	6872	broad.mit.edu	37	chrX	70602339	70602339	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacttgtctgtaggaaaggTgaatcttcagggagagcaac	12	6	3	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70602339	C	C	70602339	1	2	169	0	1	0	0	0	0	0	0	0	15632	1711	59	5		5	TAF1	23	70602339	Intron	SNP	T	TCGA-50-6591-01A-11D-1753-08	280947	70602339	84668221	148	139115											
NAP1L2	4674	broad.mit.edu	37	chrX	72433139	72433139	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttggaattatgtaagtaCgtaaattgtgaccaagtaaa	8	4	1	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72433139	T	T	72433139	3	4	169	1	0	0	0	0	1	0	0	0	10251	536	19	4	196	4	NAP1L2	23	72433139	Missense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	1830800	72433139	82837421	149	139116											
PCDH11X	27328	broad.mit.edu	37	chrX	91133292	91133292	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaactgttcttatgaattgGttctaccgtccactaatcca	5	12	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91133292	C	C	91133292	3	2	169	1	0	0	0	0	1	0	0	0	11602	1261	44	4	2059	4	PCDH11X	23	91133292	Missense_Mutation	SNP	G	TCGA-50-6591-01A-11D-1753-08	18700153	91133292	64137268	150	139117											
BEX1	55859	broad.mit.edu	37	chrX	102317992	102317992	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccttgcctgtggttctcCaagcctatgcatcatatccc	6	15	2	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102317992	A	A	102317992	4	1	169	1	0	0	0	0	0	1	0	0	1416	603	21	2	170	2	BEX1	23	102317992	Nonsense_Mutation	SNP	C	TCGA-50-6591-01A-11D-1753-08	11184700	102317992	52952568	151	139118											
XPNPEP2	7512	broad.mit.edu	37	chrX	128901751	128901751	+	Intron	DEL	C	-	-													caccacatcctctgtccctgCccctcctccaggagggtcca							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128901751	-	-	128901751	6	5	169	0	1	1	0	1	0	0	0	0	17570	754	26	0		0	XPNPEP2	23	128901751	Intron	DEL	C	TCGA-50-6591-01A-11D-1753-08	26583759	128901751	26368809	152	139119											
RBMX	27316	broad.mit.edu	37	chrX	135958875	135958876	+	Intron	INS	-	T	T													aatcaagaaagatataaaagINStttttttttttttttgagag							TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135958876	T	T	135958875	6	5	169	0	1	1	1	0	0	0	0	0	13259	1044	36	0		0	RBMX	23	135958875	Intron	INS	-	TCGA-50-6591-01A-11D-1753-08	7057124	135958875	19311685	153	139120											
PASD1	139135	broad.mit.edu	37	chrX	150842574	150842574	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggctttggcaagagttgtcTgattcactcggtcctgttgt	12	9	2	2			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150842574	A	A	150842574	2	1	169	1	0	0	0	0	0	0	0	1	11565	1567	55	5		5	PASD1	23	150842574	Silent	SNP	T	TCGA-50-6591-01A-11D-1753-08	14883699	150842574	4427986	154	139121											
GABRQ	55879	broad.mit.edu	37	chrX	151820134	151820134	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgctggagtatgtctacatCaactatcttttctacagtcg	7	9	4	0			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151820134	A	A	151820134	2	1	169	1	0	0	0	0	0	0	0	1	6235	816	29	3		3	GABRQ	23	151820134	Silent	SNP	C	TCGA-50-6591-01A-11D-1753-08	977560	151820134	3450426	155	139122											
L1CAM	3897	broad.mit.edu	37	chrX	153136432	153136432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctgcagggggcaaggaGgccgaagtcatgaccccgtc	14	12	2	1			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153136432	T	T	153136432	1	4	169	0	1	0	0	0	0	0	0	0	8660	1015	35	2		2	L1CAM	23	153136432	Intron	SNP	G	TCGA-50-6591-01A-11D-1753-08	1316298	153136432	2134128	156	139123											
PRDM16	63976	broad.mit.edu	37	chr1	3321339	3321339	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatccacacggaggagcgCgagtacaaatgcgaccagtg	13	11	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3321339	T	T	3321339	2	4	170	1	0	0	0	0	0	0	0	1	12563	755	27	4		4	PRDM16	1	3321339	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08		3321339	245929282	1	139124											
KIAA2013	90231	broad.mit.edu	37	chr1	11985482	11985482	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggagccacttggaggcgGttcaccagcttcttggcggc	15	11	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11985482	A	A	11985482	2	1	170	1	0	0	0	0	0	0	0	1	8337	1252	44	4		4	KIAA2013	1	11985482	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	8664143	11985482	237265139	2	139125											
RCC2	55920	broad.mit.edu	37	chr1	17736443	17736443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggtacggacacgtcccCgagctggcacagctgccccc	12	17	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17736443	A	A	17736443	1	1	170	0	1	0	0	0	0	0	0	0	13282	667	23	1		1	RCC2	1	17736443	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	5750961	17736443	231514178	3	139126											
C1orf201	90529	broad.mit.edu	37	chr1	24706266	24706266	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatccgatgggatagtgtaTgcattcgctgcagggtattt	12	6	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24706266	C	C	24706266	2	2	170	1	0	0	0	0	0	0	0	1	2047	1451	51	5		5	C1orf201	1	24706266	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08	6969823	24706266	224544355	4	139127											
WASF2	10163	broad.mit.edu	37	chr1	27742500	27742500	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatgctttctcttctctttCatgatatccttggtgtcctg	6	11	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27742500	T	T	27742500	3	4	170	1	0	0	0	0	1	0	0	0	17380	826	29	4	1000	4	WASF2	1	27742500	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3036234	27742500	221508121	5	139128											
SFRS4	6429	broad.mit.edu	37	chr1	29475666	29475666	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttccttgctggggctcctGcttttctctttcttgctccg	8	13	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29475666	A	A	29475666	2	1	170	1	0	0	0	0	0	0	0	1	14292	1310	46	4		4	SFRS4	1	29475666	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	1733166	29475666	219774955	6	139129											
TMEM39B	55116	broad.mit.edu	37	chr1	32557333	32557333	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacctccgcaagacaagcctCttcaaccacatggcctccat	6	17	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32557333	G	G	32557333	2	3	170	1	0	0	0	0	0	0	0	1	16285	900	32	4		4	TMEM39B	1	32557333	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	3081667	32557333	216693288	7	139130											
CSMD2	114784	broad.mit.edu	37	chr1	34238130	34238130	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaacgggcccctgcctctCagtgaagaccctggcgtggc	14	14	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34238130	T	T	34238130	1	4	170	0	1	0	0	0	0	0	0	0	3979	841	29	4		4	CSMD2	1	34238130	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1680797	34238130	215012491	8	139131											
EIF2C1	26523	broad.mit.edu	37	chr1	36354251	36354251	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaccaaatctgaaagacaCcaaccttgaaagaggggcca	9	12	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36354251	T	T	36354251	1	4	170	0	1	0	0	0	0	0	0	0	5045	522	18	4		4	EIF2C1	1	36354251	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	2116121	36354251	212896370	9	139132											
CSF3R	1441	broad.mit.edu	37	chr1	36939048	36939048	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacccaccaacatccatggGatcaagacacagttgtgggg	10	12	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36939048	A	A	36939048	3	1	170	1	0	0	0	0	1	0	0	0	3971	1174	41	4	2087	4	CSF3R	1	36939048	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	584797	36939048	212311573	10	139133											
RRAGC	64121	broad.mit.edu	37	chr1	39322858	39322858	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgatcccacaaaaaaaaAttttttttgaaaagtagaaa	4	4	0	3	rs74701224		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39322858	T	T	39322858	1	4	170	0	1	0	0	0	0	0	0	0	13785	116	4	5		5	RRAGC	1	39322858	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	2383810	39322858	209927763	11	139134											
HIVEP3	59269	broad.mit.edu	37	chr1	42049869	42049869	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacgctgggcttggcacaGggccggctgcagtactggca	16	12	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42049869	T	T	42049869	2	4	170	1	0	0	0	0	0	0	0	1	7255	987	35	2		2	HIVEP3	1	42049869	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	2727011	42049869	207200752	12	139135											
BEST4	266675	broad.mit.edu	37	chr1	45250564	45250564	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccctggactcctgatcctGatgcttgctcacctgcaagt	9	14	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45250564	A	A	45250564	1	1	170	0	1	0	0	0	0	0	0	0	1412	1305	45	4		4	BEST4	1	45250564	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3200695	45250564	204000057	13	139136											
C1orf168	199920	broad.mit.edu	37	chr1	57185666	57185666	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaatgtattaggaactcatGatttaaagtataaaatcaaa	5	4	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57185666	T	T	57185666	1	4	170	0	1	0	0	0	0	0	0	0	2032	1305	45	3		3	C1orf168	1	57185666	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	11935102	57185666	192064955	14	139137											
DOCK7	85440	broad.mit.edu	37	chr1	62940874	62940874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgctagcaaaaagcaCtaacctgattcactgtggtg	9	10	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62940874	T	T	62940874	1	4	170	0	1	0	0	0	0	0	0	0	4732	580	20	4		4	DOCK7	1	62940874	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	5755208	62940874	186309747	15	139138											
DOCK7	85440	broad.mit.edu	37	chr1	62953176	62953176	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catataccataaattcttctCcacaaacagaagacagcagg	5	11	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62953176	A	A	62953176	1	1	170	0	1	0	0	0	0	0	0	0	4732	870	30	3		3	DOCK7	1	62953176	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	12302	62953176	186297445	16	139139											
LRRC7	57554	broad.mit.edu	37	chr1	70489097	70489097	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaggagaatctcccatgtaGaggcaaccttggaacagtgg	13	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70489097	A	A	70489097	1	1	170	0	1	0	0	0	0	0	0	0	9107	957	33	4		4	LRRC7	1	70489097	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	7535921	70489097	178761524	17	139140											
PTGER3	5733	broad.mit.edu	37	chr1	71512458	71512458	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccccactgggcactggacTgagatgccgtggccttggcc	15	14	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71512458	A	A	71512458	3	1	170	1	0	0	0	0	1	0	0	0	12850	1580	55	5	688	5	PTGER3	1	71512458	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	1023361	71512458	177738163	18	139141											
LHX8	431707	broad.mit.edu	37	chr1	75606585	75606585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttaatatattaaggggCcagttttttaaattgcccaa	8	5	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75606585	A	A	75606585	1	1	170	0	1	0	0	0	0	0	0	0	8848	754	26	3		3	LHX8	1	75606585	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4094127	75606585	173644036	19	139142											
COL24A1	255631	broad.mit.edu	37	chr1	86241249	86241249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaattttatttttattctAcaagtatcagagacataata	4	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86241249	T	T	86241249	1	4	170	0	1	0	0	0	0	0	0	0	3715	406	14	5		5	COL24A1	1	86241249	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	10634664	86241249	163009372	20	139143											
GBP7	388646	broad.mit.edu	37	chr1	89630438	89630438	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatatcacccaggccctcCgtgtccagaaggatcagggt	10	14	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89630438	T	T	89630438	2	4	170	1	0	0	0	0	0	0	0	1	6341	639	23	4		4	GBP7	1	89630438	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	3389189	89630438	159620183	21	139144											
AMY2B	280	broad.mit.edu	37	chr1	104121933	104121933	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgaaattttattttacagGacattttctttaactttgca	4	6	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104121933	A	A	104121933	4	1	170	1	0	0	0	0	0	1	0	0	595	1188	41	4	1385	4	AMY2B	1	104121933	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	14491495	104121933	145128688	22	139145											
KCND3	3752	broad.mit.edu	37	chr1	112319865	112319865	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actctccatgcagttctgctCaaacatctgctcatcaataa	4	13	6	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112319865	G	G	112319865	3	3	170	1	0	0	0	0	1	0	0	0	8090	835	29	4	426	4	KCND3	1	112319865	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	8197932	112319865	136930756	23	139146											
DENND2C	163259	broad.mit.edu	37	chr1	115079948	115079948	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagctagtcaggcccacctGtaccgtggcatcttccctgt	9	15	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115079948	A	A	115079948	1	1	170	0	1	0	0	0	0	0	0	0	4470	1392	48	4		4	DENND2C	1	115079948	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2760083	115079948	134170673	24	139147											
ANKRD35	148741	broad.mit.edu	37	chr1	145561550	145561550	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagccccaggaaagatccAgtatgaagtccatggaaggt	11	10	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145561550	G	G	145561550	3	3	170	1	0	0	0	0	1	0	0	0	664	188	7	5	1276	5	ANKRD35	1	145561550	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	30481602	145561550	103689071	25	139148											
CHD1L	9557	broad.mit.edu	37	chr1	146756888	146756888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcagggtgtgtggagatGcagtgttctgtggaatatta	15	4	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146756888	T	T	146756888	1	4	170	0	1	0	0	0	0	0	0	0	3355	1334	46	3		3	CHD1L	1	146756888	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1195338	146756888	102493733	26	139149											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858747	149858749	+	In_Frame_Del	DEL	AAG	-	-													gcaacgcggctcgggacaacAagaagacgcgcatcatccct							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149858749	-	-	149858747	7	5	170	1	0	1	0	1	0	0	0	0	7245	131	5	0	225	0	HIST2H2AC	1	149858747	In_Frame_Del	DEL	AAG	TCGA-50-6592-01A-11D-1753-08	3101859	149858747	99391874	27	139150											
SCNM1	79005	broad.mit.edu	37	chr1	151138661	151138661	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggaaggagacgattggagTcaactcaatgtgctcaaagt	13	6	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151138661	A	A	151138661	3	1	170	1	0	0	0	0	1	0	0	0	14039	1664	58	5	35	5	SCNM1	1	151138661	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	1279914	151138661	98111960	28	139151											
PSMD4	5710	broad.mit.edu	37	chr1	151239877	151239877	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgggaagcacggaatAtagggttagatgtgtgttat	14	4	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151239877	G	G	151239877	1	3	170	0	1	0	0	0	0	0	0	0	12806	464	16	5		5	PSMD4	1	151239877	3'UTR	SNP	A	TCGA-50-6592-01A-11D-1753-08	101216	151239877	98010744	29	139152											
TCHH	7062	broad.mit.edu	37	chr1	152082275	152082275	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctcctcttcctcccgatAttgcctctccagctcctggc	5	20	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152082275	T	T	152082275	3	4	170	1	0	0	0	0	1	0	0	0	15822	449	16	5	2417	5	TCHH	1	152082275	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	842398	152082275	97168346	30	139153											
LCE2A	353139	broad.mit.edu	37	chr1	152671410	152671410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaccagcagcagtgccaGccccctcccaagtgcccccc	7	21	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152671410	T	T	152671410	3	4	170	1	0	0	0	0	1	0	0	0	8737	962	34	3	35	3	LCE2A	1	152671410	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	589135	152671410	96579211	31	139154											
TDRD10	126668	broad.mit.edu	37	chr1	154480955	154480955	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttccactggatatttctAaggtatttattcttcacaat	4	8	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154480955	T	T	154480955	4	4	170	1	0	0	0	0	0	1	0	0	15853	363	13	5	149	5	TDRD10	1	154480955	Nonsense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	1809545	154480955	94769666	32	139155											
FLAD1	80308	broad.mit.edu	37	chr1	154956263	154956263	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagaagactagggtcttcctCgaaggaagcacgcgcacgcc	13	12	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154956263	T	T	154956263	2	4	170	1	0	0	0	0	0	0	0	1	5977	871	31	4		4	FLAD1	1	154956263	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	475308	154956263	94294358	33	139156											
TRIM46	80128	broad.mit.edu	37	chr1	155156452	155156452	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacagtgcccctgccacCccgcctgggcatctgcctgg	11	19	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155156452	T	T	155156452	3	4	170	1	0	0	0	0	1	0	0	0	16646	623	22	4	2104	4	TRIM46	1	155156452	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	200189	155156452	94094169	34	139157											
ASH1L	55870	broad.mit.edu	37	chr1	155452127	155452127	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttctgagtgtactggagaCagcttcttagacaaaggatt	10	6	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155452127	T	T	155452127	2	4	170	1	0	0	0	0	0	0	0	1	1045	465	17	4		4	ASH1L	1	155452127	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	295675	155452127	93798494	35	139158											
GPATCH4	54865	broad.mit.edu	37	chr1	156568897	156568897	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagaggtgatatcatcCttttaagaagaaagtagaaa	10	3	1	6			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156568897	T	T	156568897	1	4	170	0	1	0	0	0	0	0	0	0	6658	695	24	4		4	GPATCH4	1	156568897	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1116770	156568897	92681724	36	139159											
SPTA1	6708	broad.mit.edu	37	chr1	158584869	158584869	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaaatagtcattccgtGgggcagtaaagacccagaat	11	7	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158584869	T	T	158584869	1	4	170	0	1	0	0	0	0	0	0	0	15234	1363	47	2		2	SPTA1	1	158584869	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2015972	158584869	90665752	37	139160											
SPTA1	6708	broad.mit.edu	37	chr1	158632750	158632750	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgatcctaagggagaaataGaatgaatgcgaagaaatccc	10	7	0	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158632750	C	C	158632750	1	2	170	0	1	0	0	0	0	0	0	0	15234	957	33	4		4	SPTA1	1	158632750	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	47881	158632750	90617871	38	139161											
OR6K6	128371	broad.mit.edu	37	chr1	158725513	158725513	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggacacagcaattgctgTcacttttgttatccttgctc	8	10	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158725513	A	A	158725513	3	1	170	1	0	0	0	0	1	0	0	0	11298	1667	58	5	910	5	OR6K6	1	158725513	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	92763	158725513	90525108	39	139162											
FCGR2C	9103	broad.mit.edu	37	chr1	161560921	161560921	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccgggtcctctggggttttCtgtgtctttcagagtggctg	14	10	4	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161560921	T	T	161560921	1	4	170	0	1	0	0	0	0	0	0	0	5840	928	32	4		4	FCGR2C	1	161560921	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	2835408	161560921	87689700	40	139163											
FCGR2C	9103	broad.mit.edu	37	chr1	161561521	161561521	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactgaggtttgcctttattCttctcatggctcatgttata	7	8	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161561521	G	G	161561521	1	3	170	0	1	0	0	0	0	0	0	0	5840	928	32	4		4	FCGR2C	1	161561521	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	600	161561521	87689100	41	139164											
UHMK1	127933	broad.mit.edu	37	chr1	162470787	162470787	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaggctggcctgcagagtGatacagaatgtacctcagct	11	12	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162470787	C	C	162470787	3	2	170	1	0	0	0	0	1	0	0	0	17092	1290	45	4	706	4	UHMK1	1	162470787	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	909266	162470787	86779834	42	139165											
ADCY10	55811	broad.mit.edu	37	chr1	167823640	167823640	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctcagactccgtttgTtggaaaacgagtacctcatg	8	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167823640	A	A	167823640	3	1	170	1	0	0	0	0	1	0	0	0	293	1722	60	5	2637	5	ADCY10	1	167823640	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	5352853	167823640	81426981	43	139166											
PAPPA2	60676	broad.mit.edu	37	chr1	176740038	176740038	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagaggtttttatttcatCtgctatgattatctttctgg	7	6	5	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176740038	G	G	176740038	1	3	170	0	1	0	0	0	0	0	0	0	11527	928	32	4		4	PAPPA2	1	176740038	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	8916398	176740038	72510583	44	139167											
ASTN1	460	broad.mit.edu	37	chr1	177001758	177001758	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaggataggtgtctcccgGatgctcagggtgccactgga	14	11	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001758	T	T	177001758	2	4	170	1	0	0	0	0	0	0	0	1	1068	1164	41	3		3	ASTN1	1	177001758	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	261720	177001758	72248863	45	139168											
C1orf125	126859	broad.mit.edu	37	chr1	179354544	179354544	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttttgatttttatattaGatttgtctttatatctactt	3	5	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179354544	T	T	179354544	1	4	170	0	1	0	0	0	0	0	0	0	2013	957	33	3		3	C1orf125	1	179354544	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2352786	179354544	69896077	46	139169											
DHX9	1660	broad.mit.edu	37	chr1	182811842	182811842	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacagtttgcatttatgtGatttatgaggttcattttgg	9	3	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182811842	C	C	182811842	1	2	170	0	1	0	0	0	0	0	0	0	4556	1305	45	4		4	DHX9	1	182811842	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3457298	182811842	66438779	47	139170											
NMNAT2	23057	broad.mit.edu	37	chr1	183247699	183247699	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctactcacatctgcctcgtTccagagccctgggatgcaga	10	14	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183247699	C	C	183247699	3	2	170	1	0	0	0	0	1	0	0	0	10594	1783	62	5	299	5	NMNAT2	1	183247699	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	435857	183247699	66002922	48	139171											
TPR	7175	broad.mit.edu	37	chr1	186324472	186324472	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actattgcaaattagctcttGaatttaaatgatttgaattg	6	4	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186324472	C	C	186324472	1	2	170	0	1	0	0	0	0	0	0	0	16540	1305	45	4		4	TPR	1	186324472	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3076773	186324472	62926149	49	139172											
PM20D1	148811	broad.mit.edu	37	chr1	205814509	205814509	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atagatgatgccatcacgctCcaacccagagaatgggggca	11	11	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205814509	T	T	205814509	3	4	170	1	0	0	0	0	1	0	0	0	12223	864	30	4	1119	4	PM20D1	1	205814509	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	19490037	205814509	43436112	50	139173											
CR2	1380	broad.mit.edu	37	chr1	207644471	207644471	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctgacccaattccggtgTatcagcacacactgcaggct	9	13	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207644471	C	C	207644471	1	2	170	0	1	0	0	0	0	0	0	0	3874	1653	57	5		5	CR2	1	207644471	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1829962	207644471	41606150	51	139174											
PPP2R5A	5525	broad.mit.edu	37	chr1	212534193	212534193	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaattacaaaacaaacctCatcagtataatataattaaa	1	6	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212534193	T	T	212534193	1	4	170	0	1	0	0	0	0	0	0	0	12493	841	29	4		4	PPP2R5A	1	212534193	3'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	4889722	212534193	36716428	52	139175											
USH2A	7399	broad.mit.edu	37	chr1	216017807	216017807	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acagctgtactgttgatgatGacaacctctggaggaagcat	11	8	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216017807	A	A	216017807	2	1	170	1	0	0	0	0	0	0	0	1	17162	1277	45	4		4	USH2A	1	216017807	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	3483614	216017807	33232814	53	139176											
USH2A	7399	broad.mit.edu	37	chr1	216246251	216246251	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctcctgttgtacgtcctCgactccaatcactatatact	5	14	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216246251	T	T	216246251	3	4	170	1	0	0	0	0	1	0	0	0	17162	884	31	4	9947	4	USH2A	1	216246251	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	228444	216246251	33004370	54	139177											
HHIPL2	79802	broad.mit.edu	37	chr1	222716993	222716993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataataaatatagaacttgCgattgtggcggaatttgggg	12	3	0	1	rs148477475	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222716993	A	A	222716993	3	1	170	1	0	0	0	0	1	0	0	0	7161	768	27	3	1346	3	HHIPL2	1	222716993	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	6470742	222716993	26533628	55	139178											
SUSD4	55061	broad.mit.edu	37	chr1	223402411	223402411	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcgacccgcaatgatatgTttcgatatcctgttcctgac	7	12	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223402411	C	C	223402411	1	2	170	0	1	0	0	0	0	0	0	0	15528	1740	60	5		5	SUSD4	1	223402411	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	685418	223402411	25848210	56	139179											
C1orf55	163859	broad.mit.edu	37	chr1	226187055	226187055	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcctctctgagacaccagGcgccgcaactcgcccggcgc	11	18	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226187055	C	C	226187055	1	2	170	0	1	0	0	0	0	0	0	0	2069	1218	42	4		4	C1orf55	1	226187055	5'UTR	SNP	G	TCGA-50-6592-01A-11D-1753-08	2784644	226187055	23063566	57	139180											
ABCB10	23456	broad.mit.edu	37	chr1	229661917	229661917	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaacagacttaaaacatgtCtaataaatttagacctagca	4	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229661917	A	A	229661917	1	1	170	0	1	0	0	0	0	0	0	0	41	928	32	3		3	ABCB10	1	229661917	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	3474862	229661917	19588704	58	139181											
SLC35F3	148641	broad.mit.edu	37	chr1	234444964	234444964	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtacttacatgcaataaaGaaaataaacactacggatgt	6	7	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234444964	C	C	234444964	3	2	170	1	0	0	0	0	1	0	0	0	14704	933	33	4	740	4	SLC35F3	1	234444964	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	4783047	234444964	14805657	59	139182											
RGS7	6000	broad.mit.edu	37	chr1	240975485	240975485	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatatatatccgattaacGgctctgcatgaaatcatcgt	6	8	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240975485	A	A	240975485	1	1	170	0	1	0	0	0	0	0	0	0	13419	1131	39	4		4	RGS7	1	240975485	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	6530521	240975485	8275136	60	139183											
CHML	1122	broad.mit.edu	37	chr1	241797473	241797473	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatttctgtttcagtataCggagtgaataatttcttcac	6	6	4	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241797473	T	T	241797473	2	4	170	1	0	0	0	0	0	0	0	1	3382	523	19	4		4	CHML	1	241797473	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	821988	241797473	7453148	61	139184											
AKT3	10000	broad.mit.edu	37	chr1	243828134	243828134	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtagtccactggagacatCtgattataaatgtgtttggc	10	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243828134	A	A	243828134	3	1	170	1	0	0	0	0	1	0	0	0	481	913	32	3	1307	3	AKT3	1	243828134	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2030661	243828134	5422487	62	139185											
TRIM58	25893	broad.mit.edu	37	chr1	248028155	248028156	+	Missense_Mutation	DNP	TG	CT	CT													gcgggagagcaagagccggcTggtccagcagagcaaggccc							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	248028156	CT	CT	248028155	3	2	170	1	0	0	0	0	1	0	0	0	16656	1580	55	5	675	5	TRIM58	1	248028155	Missense_Mutation	DNP	TG	TCGA-50-6592-01A-11D-1753-08	4200021	248028155	1222466	63	139186											
OR2T8	343172	broad.mit.edu	37	chr1	248084246	248084246	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttttttactacgtaactCaaatggagtaccataaagga	6	6	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248084246	G	G	248084246	1	3	170	0	1	0	0	0	0	0	0	0	11124	841	29	4		4	OR2T8	1	248084246	5'Flank	SNP	C	TCGA-50-6592-01A-11D-1753-08	56091	248084246	1166375	64	139187											
OR2M7	391196	broad.mit.edu	37	chr1	248487930	248487930	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaatttgataaacatttaCccagtgccttataaagcatg	5	7	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487930	T	T	248487930	1	4	170	0	1	0	0	0	0	0	0	0	11108	522	18	4		4	OR2M7	1	248487930	5'Flank	SNP	C	TCGA-50-6592-01A-11D-1753-08	403684	248487930	762691	65	139188											
OR14C36	127066	broad.mit.edu	37	chr1	248512051	248512051	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcaggatttctgtttcCcaggtccaagcttcatcatc	8	11	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248512051	A	A	248512051	1	1	170	0	1	0	0	0	0	0	0	0	11040	638	22	2		2	OR14C36	1	248512051	5'Flank	SNP	C	TCGA-50-6592-01A-11D-1753-08	24121	248512051	738570	66	139189											
OR2T4	127074	broad.mit.edu	37	chr1	248525654	248525654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcatcctcctcaccatcCacgggatgaactcagcagag	7	15	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525654	A	A	248525654	3	1	170	1	0	0	0	0	1	0	0	0	11121	594	21	2	774	2	OR2T4	1	248525654	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	13603	248525654	724967	67	139190											
ASAP2	8853	broad.mit.edu	37	chr2	9515100	9515100	+	Intron	DEL	A	-	-													gtgtgggttgttgctactttAaaaaaaaaaaaaaggccggc							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9515100	-	-	9515100	6	5	170	0	1	1	0	1	0	0	0	0	1015	377	13	0		0	ASAP2	2	9515100	Intron	DEL	A	TCGA-50-6592-01A-11D-1753-08		9515100	233684273	68	139191											
ASAP2	8853	broad.mit.edu	37	chr2	9525441	9525441	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatgaatggcgactactccAcgaagacctggatgaaagtg	11	8	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9525441	T	T	9525441	3	4	170	1	0	0	0	0	1	0	0	0	1015	159	6	5	2166	5	ASAP2	2	9525441	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	10341	9525441	233673932	69	139192											
TAF1B	9014	broad.mit.edu	37	chr2	10074012	10074012	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctcagaataaagacttccCttctccatgaagaagtgagc	8	10	2	5	rs111442552	byFrequency;by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10074012	G	G	10074012	3	3	170	1	0	0	0	0	1	0	0	0	15639	681	24	4	1724	4	TAF1B	2	10074012	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	548571	10074012	233125361	70	139193											
GREB1	9687	broad.mit.edu	37	chr2	11772056	11772056	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccatgaatatataaaaagtCcgacattcactccaaccacc	4	13	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11772056	T	T	11772056	3	4	170	1	0	0	0	0	1	0	0	0	6826	855	30	4	4843	4	GREB1	2	11772056	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1698044	11772056	231427317	71	139194											
DDX1	1653	broad.mit.edu	37	chr2	15742605	15742605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattttttttggtggtaggGggtgggaatgtatgatttat	15	0	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15742605	T	T	15742605	1	4	170	0	1	0	0	0	0	0	0	0	4374	1247	43	2		2	DDX1	2	15742605	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3970549	15742605	227456768	72	139195											
SMC6	79677	broad.mit.edu	37	chr2	17897451	17897451	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagggccaaatcttttgagtCgatcagttttactatctttc	7	8	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17897451	G	G	17897451	3	3	170	1	0	0	0	0	1	0	0	0	14901	884	31	4	1904	4	SMC6	2	17897451	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2154846	17897451	225301922	73	139196											
C2orf39	92749	broad.mit.edu	37	chr2	26678075	26678075	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacacagagctgcaggcgCtactgcagcagtatctgaac	11	11	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26678075	T	T	26678075	2	4	170	1	0	0	0	0	0	0	0	1	2186	796	28	4		4	C2orf39	2	26678075	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	8780624	26678075	216521298	74	139197											
CIB4	130106	broad.mit.edu	37	chr2	26864168	26864168	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccagtgcatctgatacctCaagcattgccccatgccaac	6	16	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26864168	T	T	26864168	2	4	170	1	0	0	0	0	0	0	0	1	3454	825	29	4		4	CIB4	2	26864168	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	186093	26864168	216335205	75	139198											
TMEM214	54867	broad.mit.edu	37	chr2	27261663	27261663	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaacaaccaggatgtcgtcAcctgtgacatggcctgcaag	11	11	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27261663	C	C	27261663	3	2	170	1	0	0	0	0	1	0	0	0	16260	159	6	5	1433	5	TMEM214	2	27261663	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	397495	27261663	215937710	76	139199											
EMILIN1	11117	broad.mit.edu	37	chr2	27305857	27305857	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggaggagcaggtggcagGggccatgcaggcatgcgggc	21	8	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27305857	A	A	27305857	3	1	170	1	0	0	0	0	1	0	0	0	5135	1232	43	4	1432	4	EMILIN1	2	27305857	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	44194	27305857	215893516	77	139200											
CAD	790	broad.mit.edu	37	chr2	27461359	27461359	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacctgcgaggtggctcccCaccacctgttcctaagccat	9	16	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27461359	T	T	27461359	3	4	170	1	0	0	0	0	1	0	0	0	2591	594	21	4	5043	4	CAD	2	27461359	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	155502	27461359	215738014	78	139201											
RBKS	64080	broad.mit.edu	37	chr2	28050350	28050350	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctagggctttgtttcattatCcaaaaattcaggtacagcat	7	8	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28050350	G	G	28050350	1	3	170	0	1	0	0	0	0	0	0	0	13216	870	30	4		4	RBKS	2	28050350	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	588991	28050350	215149023	79	139202											
CLIP4	79745	broad.mit.edu	37	chr2	29366647	29366647	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttagagatggctgacgccGcagccactgctaaggaaatc	12	11	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29366647	T	T	29366647	3	4	170	1	0	0	0	0	1	0	0	0	3567	1087	38	3	743	3	CLIP4	2	29366647	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1316297	29366647	213832726	80	139203											
ALK	238	broad.mit.edu	37	chr2	29940384	29940384	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcccaaactgaaactcacAgagtccttattatgagatag	6	9	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29940384	G	G	29940384	1	3	170	0	1	0	0	0	0	0	0	0	525	203	7	5		5	ALK	2	29940384	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	573737	29940384	213258989	81	139204											
XDH	7498	broad.mit.edu	37	chr2	31637538	31637538	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtctgctgtcattgtcaCaggttggggtccccgaactc	11	11	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31637538	A	A	31637538	1	1	170	0	1	0	0	0	0	0	0	0	17553	493	17	3		3	XDH	2	31637538	5'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	1697154	31637538	211561835	82	139205											
TMEM178	130733	broad.mit.edu	37	chr2	39944312	39944312	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggctttattgtggcagctgGaggtctctgcatcgcttatc	12	9	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39944312	C	C	39944312	3	2	170	1	0	0	0	0	1	0	0	0	16218	1174	41	4	829	4	TMEM178	2	39944312	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	8306774	39944312	203255061	83	139206											
THADA	63892	broad.mit.edu	37	chr2	43514223	43514223	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcacaaaatgtacctaTcagtagttcagaagatgcaa	7	7	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43514223	C	C	43514223	1	2	170	0	1	0	0	0	0	0	0	0	15963	1450	50	5		5	THADA	2	43514223	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	3569911	43514223	199685150	84	139207											
SIX2	10736	broad.mit.edu	37	chr2	45233433	45233433	+	Frame_Shift_Del	DEL	C	-	-													gcactggcactgcgctggggCccggagggtggcccaggctg							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45233433	-	-	45233433	7	5	170	1	0	1	0	1	0	0	0	0	14460	739	26	0	127	0	SIX2	2	45233433	Frame_Shift_Del	DEL	C	TCGA-50-6592-01A-11D-1753-08	1719210	45233433	197965940	85	139208											
STON1	11037	broad.mit.edu	37	chr2	48822396	48822396	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaaagaagtggattaaaatCgatggagaagacccagataa	11	4	0	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48822396	T	T	48822396	2	4	170	1	0	0	0	0	0	0	0	1	15434	874	31	4		4	STON1	2	48822396	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	3588963	48822396	194376977	86	139209											
MTIF2	4528	broad.mit.edu	37	chr2	55470454	55470454	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaactctcctaaaatatTgaaataattttcatgtaaat	3	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55470454	A	A	55470454	1	1	170	0	1	0	0	0	0	0	0	0	10028	1827	63	5		5	MTIF2	2	55470454	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	6648058	55470454	187728919	87	139210											
PAPOLG	64895	broad.mit.edu	37	chr2	60988923	60988923	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttagtaaaagaatggatttCtgatgtcagcgagagtaagg	12	3	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60988923	T	T	60988923	3	4	170	1	0	0	0	0	1	0	0	0	11525	913	32	4	237	4	PAPOLG	2	60988923	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	5518469	60988923	182210450	88	139211											
VPS54	51542	broad.mit.edu	37	chr2	64147478	64147478	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taattaaaaaaacctttatcAggcattttcactggccaatt	4	8	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64147478	T	T	64147478	1	4	170	0	1	0	0	0	0	0	0	0	17343	203	7	5		5	VPS54	2	64147478	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	3158555	64147478	179051895	89	139212											
MEIS1	4211	broad.mit.edu	37	chr2	66775017	66775017	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcatgagacacttaggctAttgacaaaatggctaaatat	7	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66775017	T	T	66775017	1	4	170	0	1	0	0	0	0	0	0	0	9560	464	16	5		5	MEIS1	2	66775017	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	2627539	66775017	176424356	90	139213											
GGCX	2677	broad.mit.edu	37	chr2	85781216	85781216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatgcctctggctagtccCttcctgcaaaactgtggttc	8	13	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85781216	A	A	85781216	1	1	170	0	1	0	0	0	0	0	0	0	6420	696	24	2		2	GGCX	2	85781216	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	19006199	85781216	157418157	91	139214											
RMND5A	64795	broad.mit.edu	37	chr2	87113548	87113548	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgcctaaagtaaatttAttaaaaattcagagttaatt	5	3	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87113548	G	G	87113548	1	3	170	0	1	0	0	0	0	0	0	0	13508	464	16	5		5	RMND5A	2	87113548	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	1332332	87113548	156085825	92	139215											
MRPS5	64969	broad.mit.edu	37	chr2	95783793	95783793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatagaataaagaaccaagaCgagggagtaagtaatttctg	10	4	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95783793	A	A	95783793	1	1	170	0	1	0	0	0	0	0	0	0	9940	551	19	3		3	MRPS5	2	95783793	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	8670245	95783793	147415580	93	139216											
KIAA1310	55683	broad.mit.edu	37	chr2	97297100	97297100	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggggcatctgcatcaGtcctggcaaagatgacatgc	14	9	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97297100	C	C	97297100	3	2	170	1	0	0	0	0	1	0	0	0	8292	1029	36	4	2377	4	KIAA1310	2	97297100	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1513307	97297100	145902273	94	139217											
AFF3	3899	broad.mit.edu	37	chr2	100182112	100182112	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagagttaatacagtgtcTtcctaaacaatagttttttt	5	6	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100182112	C	C	100182112	1	2	170	0	1	0	0	0	0	0	0	0	358	1624	56	5		5	AFF3	2	100182112	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	2885012	100182112	143017261	95	139218											
NMS	129521	broad.mit.edu	37	chr2	101086849	101086849	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgctgggctgatcagatgCaggacagagggttgcctctg	15	9	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101086849	T	T	101086849	1	4	170	0	1	0	0	0	0	0	0	0	10597	725	25	4		4	NMS	2	101086849	5'Flank	SNP	C	TCGA-50-6592-01A-11D-1753-08	904737	101086849	142112524	96	139219											
NMS	129521	broad.mit.edu	37	chr2	101089902	101089902	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccattaatcaatctctctCttcatccccctcatcccttt	0	18	5	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101089902	A	A	101089902	1	1	170	0	1	0	0	0	0	0	0	0	10597	928	32	3		3	NMS	2	101089902	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	3053	101089902	142109471	97	139220											
MRPS9	64965	broad.mit.edu	37	chr2	105716185	105716185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagaagccaggccaagaggGagcccgcagaaagtttacgt	14	9	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105716185	T	T	105716185	3	4	170	1	0	0	0	0	1	0	0	0	9943	1174	41	3	1199	3	MRPS9	2	105716185	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	4626283	105716185	137483188	98	139221											
BUB1	699	broad.mit.edu	37	chr2	111425442	111425442	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaccctaaaaaacagaaaaCaaacatgagcattcacttat	4	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111425442	G	G	111425442	1	3	170	0	1	0	0	0	0	0	0	0	1580	493	17	4		4	BUB1	2	111425442	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	5709257	111425442	131773931	99	139222											
SLC35F5	80255	broad.mit.edu	37	chr2	114500365	114500365	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttctttcacaggatatgaCatgcgagacaactttgcttc	8	9	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114500365	G	G	114500365	3	3	170	1	0	0	0	0	1	0	0	0	14706	478	17	4	953	4	SLC35F5	2	114500365	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3074923	114500365	128699008	100	139223											
INSIG2	51141	broad.mit.edu	37	chr2	118860814	118860815	+	Missense_Mutation	DNP	GG	TC	TC													cctgcattgacagacatctaGgagaaccacataaatttaaa							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	118860815	TC	TC	118860814	3	4	170	1	0	0	0	0	1	0	0	0	7836	1001	35	2	292	2	INSIG2	2	118860814	Missense_Mutation	DNP	GG	TCGA-50-6592-01A-11D-1753-08	4360449	118860814	124338559	101	139224											
PLEKHB2	55041	broad.mit.edu	37	chr2	131951829	131951829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaacagcttcagtgtcagGgttctgcagaaacatgtaca	10	9	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131951829	T	T	131951829	1	4	170	0	1	0	0	0	0	0	0	0	12160	1247	43	2		2	PLEKHB2	2	131951829	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	13091015	131951829	111247544	102	139225											
PLEKHB2	55041	broad.mit.edu	37	chr2	131960496	131960496	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttggtcggtggcaccggGggcagtgggggagtgggctg	23	6	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131960496	A	A	131960496	1	1	170	0	1	0	0	0	0	0	0	0	12160	1247	43	4		4	PLEKHB2	2	131960496	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	8667	131960496	111238877	103	139226											
LCT	3938	broad.mit.edu	37	chr2	136562355	136562355	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggggctggatgctggcGgccagcagtgtatcgatgag	17	9	0	1	rs148768579		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136562355	A	A	136562355	2	1	170	1	0	0	0	0	0	0	0	1	8765	1103	39	4		4	LCT	2	136562355	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	4601859	136562355	106637018	104	139227											
KCNJ3	3760	broad.mit.edu	37	chr2	155711422	155711422	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggaaatgcttctcatgtCgtcccctttaatagcaccag	9	11	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155711422	A	A	155711422	4	1	170	1	0	0	0	0	0	1	0	0	8122	893	31	3	1113	3	KCNJ3	2	155711422	Nonsense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	19149067	155711422	87487951	105	139228											
GPD2	2820	broad.mit.edu	37	chr2	157407174	157407174	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacgggacctttcacggactCtgtgcgcaaaatggatgata	11	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157407174	T	T	157407174	3	4	170	1	0	0	0	0	1	0	0	0	6671	913	32	4	913	4	GPD2	2	157407174	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1695752	157407174	85792199	106	139229											
FIGN	55137	broad.mit.edu	37	chr2	164468117	164468117	+	Nonsense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaccttccaaaatgccggaAtacttctctgcatatttttt	6	10	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164468117	C	C	164468117	4	2	170	1	0	0	0	0	0	1	0	0	5948	108	4	5	2058	5	FIGN	2	164468117	Nonsense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	7060943	164468117	78731256	107	139230											
SCN1A	6323	broad.mit.edu	37	chr2	166929794	166929794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgtgctaatttggcatGtgttggtgctacaacagtcc	10	7	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166929794	T	T	166929794	1	4	170	0	1	0	0	0	0	0	0	0	14027	1392	48	3		3	SCN1A	2	166929794	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2461677	166929794	76269579	108	139231											
SCN9A	6335	broad.mit.edu	37	chr2	167089786	167089786	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcataatttctacatacccAttgtttttatattttaaacc	1	9	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167089786	C	C	167089786	1	2	170	0	1	0	0	0	0	0	0	0	14038	232	8	5		5	SCN9A	2	167089786	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	159992	167089786	76109587	109	139232											
SP3	6670	broad.mit.edu	37	chr2	174820362	174820362	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtttatcaaatgtccgTcggcattaatgcctgcagtc	9	10	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174820362	A	A	174820362	3	1	170	1	0	0	0	0	1	0	0	0	15079	1667	58	5	1483	5	SP3	2	174820362	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	7730576	174820362	68379011	110	139233											
TTN	7273	broad.mit.edu	37	chr2	179415750	179415750	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgagggcgggcttatagttCcaacagcatttcttgcaatt	11	8	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179415750	G	G	179415750	3	3	170	1	0	0	0	0	1	0	0	0	16861	855	30	4	16579	4	TTN	2	179415750	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	4595388	179415750	63783623	111	139234											
CERKL	375298	broad.mit.edu	37	chr2	182403759	182403759	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcagagaagagagctttcGttgtaatattagatttatgt	10	3	1	3	rs139671261	by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182403759	A	A	182403759	1	1	170	0	1	0	0	0	0	0	0	0	3298	1160	40	4		4	CERKL	2	182403759	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2988009	182403759	60795614	112	139235											
FAM171B	165215	broad.mit.edu	37	chr2	187626606	187626606	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgctcaagatgaaaagAggtatctcacaggtaatgag	12	5	2	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187626606	G	G	187626606	3	3	170	1	0	0	0	0	1	0	0	0	5536	295	11	5	1567	5	FAM171B	2	187626606	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	5222847	187626606	55572767	113	139236											
ZSWIM2	151112	broad.mit.edu	37	chr2	187702340	187702341	+	Intron	DEL	TA	-	-													gcagttttacatatccattgTatatatatatatatattata							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	187702341	-	-	187702340	6	5	170	0	1	1	0	1	0	0	0	0	18370	1653	57	0		0	ZSWIM2	2	187702340	Intron	DEL	TA	TCGA-50-6592-01A-11D-1753-08	75734	187702340	55497033	114	139237											
WDR75	84128	broad.mit.edu	37	chr2	190316467	190316467	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacataaaaacccctgccttGatggatcttatgttccactg	6	11	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190316467	T	T	190316467	1	4	170	0	1	0	0	0	0	0	0	0	17452	1305	45	3		3	WDR75	2	190316467	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2614127	190316467	52882906	115	139238											
SLC40A1	30061	broad.mit.edu	37	chr2	190428701	190428701	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atactgaggatggaaccactCagtccctgagtgtaggcgta	12	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190428701	A	A	190428701	2	1	170	1	0	0	0	0	0	0	0	1	14742	813	29	3		3	SLC40A1	2	190428701	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	112234	190428701	52770672	116	139239											
DNAH7	56171	broad.mit.edu	37	chr2	196726419	196726419	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgccatagcttacttagAaatatgaaatttgattttta	5	4	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196726419	G	G	196726419	1	3	170	0	1	0	0	0	0	0	0	0	4646	261	9	5		5	DNAH7	2	196726419	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	6297718	196726419	46472954	117	139240											
DNAH7	56171	broad.mit.edu	37	chr2	196849397	196849397	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtatttggaggagtgctaaGagctttttcagctatcctct	10	7	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196849397	C	C	196849397	3	2	170	1	0	0	0	0	1	0	0	0	4646	942	33	4	10486	4	DNAH7	2	196849397	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	122978	196849397	46349976	118	139241											
TRAK2	66008	broad.mit.edu	37	chr2	202252388	202252388	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaggaacttccagtaaGtcacatggcttagtaagggc	13	7	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202252388	T	T	202252388	1	4	170	0	1	0	0	0	0	0	0	0	16574	1044	36	3		3	TRAK2	2	202252388	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	5402991	202252388	40946985	119	139242											
ALS2CR8	79800	broad.mit.edu	37	chr2	203831607	203831607	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaagctgtatatttgaaaGattttgacattgccaccacc	6	8	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203831607	C	C	203831607	1	2	170	0	1	0	0	0	0	0	0	0	555	957	33	4		4	ALS2CR8	2	203831607	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1579219	203831607	39367766	120	139243											
NBEAL1	65065	broad.mit.edu	37	chr2	204037332	204037332	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaatggatatttacaacaGggaaaaaatatttttagaga	8	2	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204037332	C	C	204037332	1	2	170	0	1	0	0	0	0	0	0	0	10282	1015	35	4		4	NBEAL1	2	204037332	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	205725	204037332	39162041	121	139244											
PARD3B	117583	broad.mit.edu	37	chr2	205829890	205829890	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtagctgattgctgtgtttGaagaacaagaaccactccac	9	9	0	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205829890	A	A	205829890	3	1	170	1	0	0	0	0	1	0	0	0	11538	1291	45	4	248	4	PARD3B	2	205829890	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1792558	205829890	37369483	122	139245											
PARD3B	117583	broad.mit.edu	37	chr2	205978323	205978323	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagatgtttttctcattccAgaagctcatgctaatgaaaa	6	7	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205978323	T	T	205978323	1	4	170	0	1	0	0	0	0	0	0	0	11538	203	7	5		5	PARD3B	2	205978323	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	148433	205978323	37221050	123	139246											
PTH2R	5746	broad.mit.edu	37	chr2	209358129	209358129	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagccagtcacaggtggcGgccagcacacgcatggtgct	14	13	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209358129	T	T	209358129	2	4	170	1	0	0	0	0	0	0	0	1	12866	1103	39	1		1	PTH2R	2	209358129	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	3379806	209358129	33841244	124	139247											
XRCC5	7520	broad.mit.edu	37	chr2	216982416	216982416	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttcattggaaagagttgCgtgttcacatgaagagactg	12	6	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216982416	T	T	216982416	1	4	170	0	1	0	0	0	0	0	0	0	17583	783	27	4		4	XRCC5	2	216982416	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	7624287	216982416	26216957	125	139248											
C2orf62	375307	broad.mit.edu	37	chr2	219219144	219219144	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctaagaagattgatcgccAcatgtatcacagcctgtacc	7	11	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219219144	G	G	219219144	1	3	170	0	1	0	0	0	0	0	0	0	2203	174	6	5		5	C2orf62	2	219219144	5'Flank	SNP	A	TCGA-50-6592-01A-11D-1753-08	2236728	219219144	23980229	126	139249											
ANKZF1	55139	broad.mit.edu	37	chr2	220098947	220098947	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagcctactgaggaagaaAtaagaaagatctgcagggat	12	5	1	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220098947	G	G	220098947	3	3	170	1	0	0	0	0	1	0	0	0	693	101	4	5	1171	5	ANKZF1	2	220098947	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	879803	220098947	23100426	127	139250											
EPHA4	2043	broad.mit.edu	37	chr2	222298897	222298897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccaatagggcctctcccCgtacgacatcacttcccaca	5	18	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222298897	A	A	222298897	3	1	170	1	0	0	0	0	1	0	0	0	5211	652	23	1	515	1	EPHA4	2	222298897	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2199950	222298897	20900476	128	139251											
FARSB	10056	broad.mit.edu	37	chr2	223513485	223513485	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcaagctccagaccaaattCaaaacatagttcatcaaatt	3	10	4	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223513485	G	G	223513485	3	3	170	1	0	0	0	0	1	0	0	0	5737	835	29	4	1745	4	FARSB	2	223513485	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1214588	223513485	19685888	129	139252											
SCG2	7857	broad.mit.edu	37	chr2	224462659	224462659	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaaaatacgacgttttctGatttgctgcactctccatcc	8	11	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224462659	C	C	224462659	3	2	170	1	0	0	0	0	1	0	0	0	14003	1299	45	4	515	4	SCG2	2	224462659	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	949174	224462659	18736714	130	139253											
DOCK10	55619	broad.mit.edu	37	chr2	225684102	225684102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcaggtatccacagagacTactttatttatttacaatgc	6	8	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225684102	A	A	225684102	1	1	170	0	1	0	0	0	0	0	0	0	4725	1537	53	5		5	DOCK10	2	225684102	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1221443	225684102	17515271	131	139254											
SP140	11262	broad.mit.edu	37	chr2	231174740	231174740	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggactgtcacatcccgccTgtggaagctgagaggtaagt	14	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231174740	A	A	231174740	2	1	170	1	0	0	0	0	0	0	0	1	15076	1567	55	5		5	SP140	2	231174740	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08	5490638	231174740	12024633	132	139255											
EIF4E2	9470	broad.mit.edu	37	chr2	233431656	233431656	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagttcatggttggggagGagatctgtggggctgtggtg	19	4	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233431656	T	T	233431656	4	4	170	1	0	0	0	0	0	1	0	0	5072	1175	41	3	511	3	EIF4E2	2	233431656	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2256916	233431656	9767717	133	139256											
NEU2	4759	broad.mit.edu	37	chr2	233899563	233899563	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtgcctacctcaacccGcgacctccagcccctgaggc	10	19	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233899563	A	A	233899563	2	1	170	1	0	0	0	0	0	0	0	1	10437	1074	38	4		4	NEU2	2	233899563	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	467907	233899563	9299810	134	139257											
THUMPD3	25917	broad.mit.edu	37	chr3	9413088	9413088	+	Frame_Shift_Del	DEL	G	-	-													gaaactgagcctcaagtgctGaagtttagagtcacatgcaa							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9413088	-	-	9413088	7	5	170	1	0	1	0	1	0	0	0	0	16007	1277	45	0	685	0	THUMPD3	3	9413088	Frame_Shift_Del	DEL	G	TCGA-50-6592-01A-11D-1753-08		9413088	188609342	135	139258											
CNOT10	25904	broad.mit.edu	37	chr3	32805965	32805965	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatcagacaaaggtgaaaAtgaagcaatggaatcctgta	11	5	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32805965	G	G	32805965	3	3	170	1	0	0	0	0	1	0	0	0	3650	101	4	5	1921	5	CNOT10	3	32805965	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	23392877	32805965	165216465	136	139259											
PBRM1	55193	broad.mit.edu	37	chr3	52637791	52637791	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgacatacaagctgtttCttttaaacacctcaattata	3	9	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52637791	G	G	52637791	1	3	170	0	1	0	0	0	0	0	0	0	11585	928	32	4		4	PBRM1	3	52637791	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	19831826	52637791	145384639	137	139260											
PTPRG	5793	broad.mit.edu	37	chr3	62259225	62259225	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaagactgataaagtgagTattggagcaaatcacctagc	10	6	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62259225	A	A	62259225	1	1	170	0	1	0	0	0	0	0	0	0	12910	1653	57	5		5	PTPRG	3	62259225	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	9621434	62259225	135763205	138	139261											
TMF1	7110	broad.mit.edu	37	chr3	69097192	69097192	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccaaagctatgtcctttgTttctgctgtgagagactgcg	10	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69097192	C	C	69097192	3	2	170	1	0	0	0	0	1	0	0	0	16351	1725	60	5	2681	5	TMF1	3	69097192	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	6837967	69097192	128925238	139	139262											
CNTN3	5067	broad.mit.edu	37	chr3	74383778	74383778	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactcaaccaaaaccacttAtttagaaaacatttctagag	3	11	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74383778	G	G	74383778	1	3	170	0	1	0	0	0	0	0	0	0	3674	464	16	5		5	CNTN3	3	74383778	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	5286586	74383778	123638652	140	139263											
FAM55C	91775	broad.mit.edu	37	chr3	101519958	101519958	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctttgatattcactgtgAgaatctgattgagctcctgg	9	7	3	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101519958	T	T	101519958	1	4	170	0	1	0	0	0	0	0	0	0	5637	319	11	5		5	FAM55C	3	101519958	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	27136180	101519958	96502472	141	139264											
MYH15	22989	broad.mit.edu	37	chr3	108102326	108102326	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggaaccctttgttcttatCttttaaaagcttttaaggag	7	6	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108102326	G	G	108102326	1	3	170	0	1	0	0	0	0	0	0	0	10128	928	32	4		4	MYH15	3	108102326	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	6582368	108102326	89920104	142	139265											
MYH15	22989	broad.mit.edu	37	chr3	108127306	108127306	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggctcagtctcaaaccaAtgataccaggcacaacagat	8	11	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108127306	G	G	108127306	1	3	170	0	1	0	0	0	0	0	0	0	10128	116	4	5		5	MYH15	3	108127306	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	24980	108127306	89895124	143	139266											
DPPA4	55211	broad.mit.edu	37	chr3	109052752	109052752	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagacattttttctttggttCtctttgctgatgttcctggc	8	8	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109052752	T	T	109052752	3	4	170	1	0	0	0	0	1	0	0	0	4776	913	32	4	795	4	DPPA4	3	109052752	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	925446	109052752	88969678	144	139267											
CCDC52	152185	broad.mit.edu	37	chr3	113225387	113225387	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcactgaagttttcttcttCtttactttcggtgtctttct	5	9	6	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113225387	G	G	113225387	3	3	170	1	0	0	0	0	1	0	0	0	2850	912	32	4	2569	4	CCDC52	3	113225387	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	4172635	113225387	84797043	145	139268											
KTELC1	56983	broad.mit.edu	37	chr3	119205483	119205483	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtaccccccaaccctaaaGgtacagaggggaccagccct	9	15	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119205483	C	C	119205483	1	2	170	0	1	0	0	0	0	0	0	0	8655	1015	35	4		4	KTELC1	3	119205483	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	5980096	119205483	78816947	146	139269											
CD80	941	broad.mit.edu	37	chr3	119248738	119248738	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatttactgagattaaggtAatggcccaggatgggagcag	13	7	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119248738	G	G	119248738	2	3	170	1	0	0	0	0	0	0	0	1	3068	358	13	5		5	CD80	3	119248738	Silent	SNP	A	TCGA-50-6592-01A-11D-1753-08	43255	119248738	78773692	147	139270											
PLXNA1	5361	broad.mit.edu	37	chr3	126708349	126708349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccattggctgcgagcagGcgggtgtggagtaccgcctg	16	12	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126708349	T	T	126708349	3	4	170	1	0	0	0	0	1	0	0	0	12214	1203	42	3	915	3	PLXNA1	3	126708349	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	7459611	126708349	71314081	148	139271											
PIK3R4	30849	broad.mit.edu	37	chr3	130447403	130447403	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaacatcgttggctttctGacgtccaaagaatacacaca	6	11	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130447403	C	C	130447403	3	2	170	1	0	0	0	0	1	0	0	0	12016	1299	45	4	2425	4	PIK3R4	3	130447403	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	3739054	130447403	67575027	149	139272											
ACAD11	84129	broad.mit.edu	37	chr3	132363796	132363796	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatatgttttccgtcatcCccaaatcctactgaaatgtc	5	11	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132363796	A	A	132363796	1	1	170	0	1	0	0	0	0	0	0	0	109	638	22	2		2	ACAD11	3	132363796	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1916393	132363796	65658634	150	139273											
SRPRB	58477	broad.mit.edu	37	chr3	133525472	133525472	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcttctggaagttaatccgGagcagaaggagcagtcagag	14	7	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133525472	T	T	133525472	2	4	170	1	0	0	0	0	0	0	0	1	15281	1161	41	3		3	SRPRB	3	133525472	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	1161676	133525472	64496958	151	139274											
SI	6476	broad.mit.edu	37	chr3	164764690	164764690	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaccattccatttgttccCatgaagcagtattgtctcct	6	11	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164764690	T	T	164764690	4	4	170	1	0	0	0	0	0	1	0	0	14410	595	21	4	3789	4	SI	3	164764690	Nonsense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	31239218	164764690	33257740	152	139275											
ZBBX	79740	broad.mit.edu	37	chr3	167077582	167077582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggagaggtgtatgaggcCatgtgaaagttctattctaa	13	4	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167077582	A	A	167077582	1	1	170	0	1	0	0	0	0	0	0	0	17643	609	21	2		2	ZBBX	3	167077582	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	2312892	167077582	30944848	153	139276											
MECOM	2122	broad.mit.edu	37	chr3	168845574	168845574	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcacaaagcctcaaaattCagcataacattgcagaaaaa	5	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168845574	G	G	168845574	1	3	170	0	1	0	0	0	0	0	0	0	9515	841	29	4		4	MECOM	3	168845574	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1767992	168845574	29176856	154	139277											
FNDC3B	64778	broad.mit.edu	37	chr3	172098807	172098807	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaaattttatgggagaCggtaccatcaatgaaaggtg	12	4	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172098807	G	G	172098807	3	3	170	1	0	0	0	0	1	0	0	0	6028	536	19	4	3321	4	FNDC3B	3	172098807	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3253233	172098807	25923623	155	139278											
ECT2	1894	broad.mit.edu	37	chr3	172525487	172525487	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaatttcattgctctgaggGaactaaacttgcatacatct	8	8	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172525487	T	T	172525487	1	4	170	0	1	0	0	0	0	0	0	0	4941	1189	41	3		3	ECT2	3	172525487	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	426680	172525487	25496943	156	139279											
PIK3CA	5290	broad.mit.edu	37	chr3	178916946	178916946	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaggcaaccgtgaagaaaaGatcctcaatcgagaaattgg	11	7	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178916946	C	C	178916946	3	2	170	1	0	0	0	0	1	0	0	0	12008	933	33	4	335	4	PIK3CA	3	178916946	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	6391459	178916946	19105484	157	139280											
THPO	7066	broad.mit.edu	37	chr3	184090235	184090235	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttgtccagttgtctcccAggggcgccctgcagggaagg	14	12	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184090235	G	G	184090235	1	3	170	0	1	0	0	0	0	0	0	0	15995	203	7	5		5	THPO	3	184090235	3'UTR	SNP	A	TCGA-50-6592-01A-11D-1753-08	5173289	184090235	13932195	158	139281											
VPS8	23355	broad.mit.edu	37	chr3	184654067	184654067	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaagccttgtaaagctgcgGagctggttgccacccacttt	11	11	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184654067	T	T	184654067	4	4	170	1	0	0	0	0	0	1	0	0	17345	1175	41	3	3062	3	VPS8	3	184654067	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	563832	184654067	13368363	159	139282											
SENP2	59343	broad.mit.edu	37	chr3	185347653	185347653	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaactttgcctggtccctCtagctgctggtggttctttc	10	11	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185347653	T	T	185347653	1	4	170	0	1	0	0	0	0	0	0	0	14160	928	32	4		4	SENP2	3	185347653	3'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	693586	185347653	12674777	160	139283											
DGKG	1608	broad.mit.edu	37	chr3	185970902	185970902	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccccagcggagacaaCgggcaaggtcatttcctgtt	10	14	1	1	rs148285460		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185970902	T	T	185970902	3	4	170	1	0	0	0	0	1	0	0	0	4509	536	19	4	827	4	DGKG	3	185970902	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	623249	185970902	12051528	161	139284											
DGKG	1608	broad.mit.edu	37	chr3	185975687	185975687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcccatctccaccacagGccaaaacacggaagtctgga	8	15	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185975687	T	T	185975687	3	4	170	1	0	0	0	0	1	0	0	0	4509	1203	42	3	945	3	DGKG	3	185975687	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	4785	185975687	12046743	162	139285											
TP63	8626	broad.mit.edu	37	chr3	189590692	189590692	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgttgaagatcaaagaGtccctggaactcatgcagta	10	8	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189590692	A	A	189590692	2	1	170	1	0	0	0	0	0	0	0	1	16516	1020	36	4		4	TP63	3	189590692	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	3615005	189590692	8431738	163	139286											
TMEM207	131920	broad.mit.edu	37	chr3	190147425	190147425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatatggaggtggggagcCtaaagggccaaaacatggag	15	6	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190147425	A	A	190147425	3	1	170	1	0	0	0	0	1	0	0	0	16255	681	24	2	44	2	TMEM207	3	190147425	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	556733	190147425	7875005	164	139287											
CCDC50	152137	broad.mit.edu	37	chr3	191100670	191100670	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactttggggtgaataaggaGatttcagttccctaagaaga	12	5	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191100670	T	T	191100670	1	4	170	0	1	0	0	0	0	0	0	0	2848	957	33	3		3	CCDC50	3	191100670	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	953245	191100670	6921760	165	139288											
GP5	2814	broad.mit.edu	37	chr3	194117342	194117342	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattggtttacccaagggctCtctctctgattaattttcga	7	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194117342	A	A	194117342	3	1	170	1	0	0	0	0	1	0	0	0	6648	913	32	3	16	3	GP5	3	194117342	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3016672	194117342	3905088	166	139289											
LRRC33	375387	broad.mit.edu	37	chr3	196387756	196387756	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacctgagctccaaccagctCctgggcgtcccccctggcct	9	19	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196387756	A	A	196387756	2	1	170	1	0	0	0	0	0	0	0	1	9075	842	30	3		3	LRRC33	3	196387756	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	2270414	196387756	1634674	167	139290											
IDUA	3425	broad.mit.edu	37	chr4	997818	997818	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtgcctgtggacatacgaGatccagttctctcaggacgg	13	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	997818	A	A	997818	2	1	170	1	0	0	0	0	0	0	0	1	7574	933	33	4		4	IDUA	4	997818	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08		997818	190156458	168	139291											
KIAA1530	57654	broad.mit.edu	37	chr4	1346745	1346745	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgcggggagtgggcctctGagtgtggttttgagtgggct	19	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1346745	C	C	1346745	1	2	170	0	1	0	0	0	0	0	0	0	8311	1305	45	4		4	KIAA1530	4	1346745	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	348927	1346745	189807531	169	139292											
LETM1	3954	broad.mit.edu	37	chr4	1823941	1823941	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaccggggcagtgtccttCaaggtctctgactgcaggac	13	12	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1823941	T	T	1823941	2	4	170	1	0	0	0	0	0	0	0	1	8806	825	29	4		4	LETM1	4	1823941	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	477196	1823941	189330335	170	139293											
WHSC1	7468	broad.mit.edu	37	chr4	1956800	1956800	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagcattaacttttcaaattCatggaggctgagtaattatt	7	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1956800	T	T	1956800	1	4	170	0	1	0	0	0	0	0	0	0	17489	841	29	4		4	WHSC1	4	1956800	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	132859	1956800	189197476	171	139294											
KIAA0232	9778	broad.mit.edu	37	chr4	6843574	6843574	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatgtttgtgatcagaaaAcaatactattaagatggcag	8	7	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6843574	T	T	6843574	1	4	170	0	1	0	0	0	0	0	0	0	8233	58	2	5		5	KIAA0232	4	6843574	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	4886774	6843574	184310702	172	139295											
SORCS2	57537	broad.mit.edu	37	chr4	7668759	7668759	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtaaaagggcattttcaCttgctgaatataacatgtag	8	5	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7668759	T	T	7668759	1	4	170	0	1	0	0	0	0	0	0	0	15045	580	20	4		4	SORCS2	4	7668759	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	825185	7668759	183485517	173	139296											
ACOX3	8310	broad.mit.edu	37	chr4	8407536	8407536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgtggccagtgcatgcaCgggggctaggcgtaggtccc	18	11	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8407536	A	A	8407536	1	1	170	0	1	0	0	0	0	0	0	0	160	551	19	3		3	ACOX3	4	8407536	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	738777	8407536	182746740	174	139297											
CPZ	8532	broad.mit.edu	37	chr4	8607764	8607764	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatggcaacgaggtggCgggccgggagatgctcatct	15	10	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8607764	A	A	8607764	3	1	170	1	0	0	0	0	1	0	0	0	3871	768	27	3	776	3	CPZ	4	8607764	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	200228	8607764	182546512	175	139298											
PROM1	8842	broad.mit.edu	37	chr4	15993844	15993844	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactttaatttctcctaaagGatcaagcatgaacacatgcg	6	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15993844	A	A	15993844	1	1	170	0	1	0	0	0	0	0	0	0	12661	1189	41	4		4	PROM1	4	15993844	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	7386080	15993844	175160432	176	139299											
ARAP2	116984	broad.mit.edu	37	chr4	36134867	36134867	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatactgtgtaacaaatgcTatacagctgttcactataat	5	9	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36134867	C	C	36134867	3	2	170	1	0	0	0	0	1	0	0	0	841	1512	53	5	1762	5	ARAP2	4	36134867	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	20141023	36134867	155019409	177	139300											
TLR10	81793	broad.mit.edu	37	chr4	38776689	38776689	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcataatgaggaagagttcTgaatcctaagaagacagtat	9	5	2	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38776689	G	G	38776689	2	3	170	1	0	0	0	0	0	0	0	1	16073	1588	55	5		5	TLR10	4	38776689	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08	2641822	38776689	152377587	178	139301											
RBM47	54502	broad.mit.edu	37	chr4	40438443	40438443	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaatgggagcattctcaatCtgcttcatactgacctgtac	8	10	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40438443	T	T	40438443	1	4	170	0	1	0	0	0	0	0	0	0	13249	928	32	4		4	RBM47	4	40438443	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1661754	40438443	150715833	179	139302											
TEC	7006	broad.mit.edu	37	chr4	48170630	48170630	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttctggtgctggaggtagTgcttttcttatacctgaaaa	11	6	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48170630	A	A	48170630	2	1	170	1	0	0	0	0	0	0	0	1	15864	1683	59	5		5	TEC	4	48170630	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08	7732187	48170630	142983646	180	139303											
LPHN3	23284	broad.mit.edu	37	chr4	62933853	62933853	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaagcttacttgttgtttTttctttccttttcttcatgc	5	8	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62933853	C	C	62933853	1	2	170	0	1	0	0	0	0	0	0	0	9004	1856	64	5		5	LPHN3	4	62933853	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	14763223	62933853	128220423	181	139304											
UGT2B10	7365	broad.mit.edu	37	chr4	69692148	69692148	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttctttggagatttgatggGaataaaccagatgccttagg	12	5	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69692148	T	T	69692148	2	4	170	1	0	0	0	0	0	0	0	1	17082	1161	41	3		3	UGT2B10	4	69692148	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	6758295	69692148	121462128	182	139305											
ENAM	10117	broad.mit.edu	37	chr4	71510242	71510242	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggctccaatccagaaggcatCcaaagtcaagtccaagaaaa	8	11	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71510242	G	G	71510242	3	3	170	1	0	0	0	0	1	0	0	0	5154	845	30	4	3129	4	ENAM	4	71510242	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1818094	71510242	119644034	183	139306											
FRAS1	80144	broad.mit.edu	37	chr4	79340086	79340086	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccatgtgttcctcttcctTcttaaactttgtttaggcta	5	10	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79340086	G	G	79340086	1	3	170	0	1	0	0	0	0	0	0	0	6102	1798	62	5		5	FRAS1	4	79340086	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	7829844	79340086	111814190	184	139307											
ABCG2	9429	broad.mit.edu	37	chr4	89034796	89034796	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctttcttggatgcttcccTaacaccttcattctaaagct	4	14	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89034796	G	G	89034796	1	3	170	0	1	0	0	0	0	0	0	0	69	1537	53	5		5	ABCG2	4	89034796	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	9694710	89034796	102119480	185	139308											
SMARCAD1	56916	broad.mit.edu	37	chr4	95206110	95206110	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattttgtatttttttttaGagaagtactagttataaaac	5	2	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95206110	C	C	95206110	5	2	170	1	0	0	0	0	0	0	1	0	14886	956	33	4	3001	4	SMARCAD1	4	95206110	Splice_Site	SNP	G	TCGA-50-6592-01A-11D-1753-08	6171314	95206110	95948166	186	139309											
C4orf37	285555	broad.mit.edu	37	chr4	98633811	98633811	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactttctggaaattaattcTattcttgtgtcactgttaag	6	6	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98633811	C	C	98633811	1	2	170	0	1	0	0	0	0	0	0	0	2290	1537	53	5		5	C4orf37	4	98633811	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	3427701	98633811	92520465	187	139310											
GSTCD	79807	broad.mit.edu	37	chr4	106744216	106744216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagaattgtggatttctGcagcggtggggtattttatc	13	5	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106744216	T	T	106744216	3	4	170	1	0	0	0	0	1	0	0	0	6901	1319	46	3	1364	3	GSTCD	4	106744216	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	8110405	106744216	84410060	188	139311											
ANK2	287	broad.mit.edu	37	chr4	114195639	114195639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctttacatattgcctcccGcctgggtaagacagaaattg	8	11	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114195639	T	T	114195639	3	4	170	1	0	0	0	0	1	0	0	0	621	1087	38	3	1600	3	ANK2	4	114195639	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	7451423	114195639	76958637	189	139312											
ARSJ	79642	broad.mit.edu	37	chr4	114824400	114824400	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcggtagtgttcgaaatacCtgccaggagcttgcagtggt	13	8	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114824400	T	T	114824400	3	4	170	1	0	0	0	0	1	0	0	0	999	681	24	4	973	4	ARSJ	4	114824400	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	628761	114824400	76329876	190	139313											
TRAM1L1	133022	broad.mit.edu	37	chr4	118006123	118006123	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggtctgacaggcagttttCagagattaaaatgaatgtgc	12	5	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118006123	A	A	118006123	4	1	170	1	0	0	0	0	0	1	0	0	16576	835	29	3	686	3	TRAM1L1	4	118006123	Nonsense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3181723	118006123	73148153	191	139314											
OTUD4	54726	broad.mit.edu	37	chr4	146080515	146080515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgacagggataaagaaaCttcagcagactgctgtattt	10	6	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146080515	A	A	146080515	1	1	170	0	1	0	0	0	0	0	0	0	11408	580	20	3		3	OTUD4	4	146080515	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	28074392	146080515	45073761	192	139315											
ETFDH	2110	broad.mit.edu	37	chr4	159601866	159601866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttaaaaacatctaataatAttttgtggctttaccaagtc	4	6	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159601866	G	G	159601866	1	3	170	0	1	0	0	0	0	0	0	0	5313	464	16	5		5	ETFDH	4	159601866	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	13521351	159601866	31552410	193	139316											
NAF1	92345	broad.mit.edu	37	chr4	164049972	164049972	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttttaaaaatctagctcCataatcactcttgaaaaaaa	3	7	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164049972	T	T	164049972	1	4	170	0	1	0	0	0	0	0	0	0	10234	609	21	4		4	NAF1	4	164049972	3'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	4448106	164049972	27104304	194	139317											
PALLD	23022	broad.mit.edu	37	chr4	169837281	169837281	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttacataaagtataaaatgaGagctgggcacagtggctcac	10	7	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169837281	A	A	169837281	1	1	170	0	1	0	0	0	0	0	0	0	11501	957	33	4		4	PALLD	4	169837281	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	5787309	169837281	21316995	195	139318											
ASB5	140458	broad.mit.edu	37	chr4	177143487	177143487	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcctgcttccagcagagTtctggcacatgccacgtgat	10	13	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177143487	C	C	177143487	3	2	170	1	0	0	0	0	1	0	0	0	1030	1725	60	5	648	5	ASB5	4	177143487	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	7306206	177143487	14010789	196	139319											
ACSL1	2180	broad.mit.edu	37	chr4	185678694	185678694	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattcctcatgtatgtcttTaggtcaccccatatgtttat	5	9	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185678694	C	C	185678694	1	2	170	0	1	0	0	0	0	0	0	0	177	1769	61	5		5	ACSL1	4	185678694	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	8535207	185678694	5475582	197	139320											
CYP4V2	285440	broad.mit.edu	37	chr4	187120254	187120254	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtaagtccctgactttTacaattgtggtaaaatagac	8	7	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187120254	C	C	187120254	1	2	170	0	1	0	0	0	0	0	0	0	4225	1769	61	5		5	CYP4V2	4	187120254	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1441560	187120254	4034022	198	139321											
ADCY2	108	broad.mit.edu	37	chr5	7717298	7717298	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaaaagaagagatttgaaGaagaattgaatgaaaggatg	11	2	0	7			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7717298	C	C	7717298	3	2	170	1	0	0	0	0	1	0	0	0	294	943	33	4	1697	4	ADCY2	5	7717298	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08		7717298	173197962	199	139322											
SEMA5A	9037	broad.mit.edu	37	chr5	9066617	9066617	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttccagcaaattcggatCagccaggcgggctttgcatg	11	12	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9066617	A	A	9066617	3	1	170	1	0	0	0	0	1	0	0	0	14150	826	29	3	1037	3	SEMA5A	5	9066617	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1349319	9066617	171848643	200	139323											
SEMA5A	9037	broad.mit.edu	37	chr5	9226925	9226925	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaactagtatttttacaCaatgttttgcctcttctgat	4	7	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9226925	T	T	9226925	1	4	170	0	1	0	0	0	0	0	0	0	14150	493	17	4		4	SEMA5A	5	9226925	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	160308	9226925	171688335	201	139324											
SEMA5A	9037	broad.mit.edu	37	chr5	9226985	9226985	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaagaagccataccgagCggttggtgcagacaggcgtg	14	9	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9226985	A	A	9226985	3	1	170	1	0	0	0	0	1	0	0	0	14150	768	27	3	2864	3	SEMA5A	5	9226985	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	60	9226985	171688275	202	139325											
SEMA5A	9037	broad.mit.edu	37	chr5	9337943	9337943	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctaaatagaaaaaataaaTaaataaaaagataaaaatga	3	1	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9337943	G	G	9337943	1	3	170	0	1	0	0	0	0	0	0	0	14150	1421	49	5		5	SEMA5A	5	9337943	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	110958	9337943	171577317	203	139326											
MARCH6	10299	broad.mit.edu	37	chr5	10397495	10397495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttatagtattatGgtaggaatttagttttgtag	8	0	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10397495	T	T	10397495	1	4	170	0	1	0	0	0	0	0	0	0	9397	1363	47	2		2	MARCH6	5	10397495	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1059552	10397495	170517765	204	139327											
DNAH5	1767	broad.mit.edu	37	chr5	13885094	13885094	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaaaccacacaagattaTtaccccggaagttaattgtg	7	9	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13885094	C	C	13885094	1	2	170	0	1	0	0	0	0	0	0	0	4644	1508	52	5		5	DNAH5	5	13885094	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	3487599	13885094	167030166	205	139328											
ANKH	56172	broad.mit.edu	37	chr5	14769115	14769115	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagacggcagcgatggcCcctgccaccaccatacacag	10	15	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14769115	T	T	14769115	2	4	170	1	0	0	0	0	0	0	0	1	627	610	22	4		4	ANKH	5	14769115	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	884021	14769115	166146145	206	139329											
CDH18	1016	broad.mit.edu	37	chr5	19591263	19591263	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatggagtaggtcatgtcaGcatttgagccagtgtcagca	13	7	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19591263	A	A	19591263	3	1	170	1	0	0	0	0	1	0	0	0	3133	971	34	4	1498	4	CDH18	5	19591263	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	4822148	19591263	161323997	207	139330											
PRDM9	56979	broad.mit.edu	37	chr5	23526879	23526879	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggagtgtgggcggggctTtagctggaagtcacacctcc	16	10	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23526879	A	A	23526879	3	1	170	1	0	0	0	0	1	0	0	0	12569	1841	64	5	1720	5	PRDM9	5	23526879	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	3935616	23526879	157388381	208	139331											
CDH6	1004	broad.mit.edu	37	chr5	31302202	31302202	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatgtttgacttatatctGtctggtgattaataggtaca	8	5	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31302202	A	A	31302202	1	1	170	0	1	0	0	0	0	0	0	0	3144	1392	48	4		4	CDH6	5	31302202	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	7775323	31302202	149613058	209	139332											
MTMR12	54545	broad.mit.edu	37	chr5	32270928	32270928	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgcaactagttaccctttTgacttcctcttcctttgtgt	5	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32270928	A	A	32270928	4	1	170	1	0	0	0	0	0	1	0	0	10035	1821	63	5	1807	5	MTMR12	5	32270928	Nonsense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	968726	32270928	148644332	210	139333											
TARS	6897	broad.mit.edu	37	chr5	33456226	33456226	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtatgtcattttgtctttGttaaaattcctttcatttta	4	5	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33456226	C	C	33456226	1	2	170	0	1	0	0	0	0	0	0	0	15678	1392	48	4		4	TARS	5	33456226	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1185298	33456226	147459034	211	139334											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881443	33881443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaattctgtagtacacCcagtcctctgagccatccaa	7	12	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33881443	A	A	33881443	3	1	170	1	0	0	0	0	1	0	0	0	257	624	22	2	4606	2	ADAMTS12	5	33881443	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	425217	33881443	147033817	212	139335											
TTC23L	153657	broad.mit.edu	37	chr5	34863158	34863158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctggctcctgcagaacCgatatccttccattcctagc	8	15	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34863158	A	A	34863158	3	1	170	1	0	0	0	0	1	0	0	0	16817	666	23	1	549	1	TTC23L	5	34863158	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	981715	34863158	146052102	213	139336											
AGXT2	64902	broad.mit.edu	37	chr5	35037072	35037072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctcaggaagaagtgcgGcaagcttctctgcatattca	12	9	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35037072	T	T	35037072	3	4	170	1	0	0	0	0	1	0	0	0	405	1203	42	3	1127	3	AGXT2	5	35037072	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	173914	35037072	145878188	214	139337											
PTGER4	5734	broad.mit.edu	37	chr5	40681297	40681297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgtcaccgacctgttgGgcactttgttggtgagcccg	14	11	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40681297	T	T	40681297	3	4	170	1	0	0	0	0	1	0	0	0	12851	1232	43	2	204	2	PTGER4	5	40681297	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	5644225	40681297	140233963	215	139338											
C7	730	broad.mit.edu	37	chr5	40958273	40958273	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaaatggtggtttggctActgttgaggggacccattgt	14	6	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40958273	C	C	40958273	3	2	170	1	0	0	0	0	1	0	0	0	2400	391	14	5	1441	5	C7	5	40958273	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	276976	40958273	139956987	216	139339											
HCN1	348980	broad.mit.edu	37	chr5	45396782	45396782	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actcatagctttgaagagtgCgtatgaatactgctttcccc	8	10	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45396782	G	G	45396782	3	3	170	1	0	0	0	0	1	0	0	0	7062	768	27	4	1650	4	HCN1	5	45396782	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	4438509	45396782	135518478	217	139340											
HCN1	348980	broad.mit.edu	37	chr5	45645511	45645511	+	Frame_Shift_Del	DEL	C	-	-													catcttgatcactttggggtCcaggatgatttcagaactgt							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45645511	-	-	45645511	7	5	170	1	0	1	0	1	0	0	0	0	7062	855	30	0	2075	0	HCN1	5	45645511	Frame_Shift_Del	DEL	C	TCGA-50-6592-01A-11D-1753-08	248729	45645511	135269749	218	139341											
ACOT12	134526	broad.mit.edu	37	chr5	80643486	80643486	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaaaggcaacattttcctCagtcctttccttgacttctt	4	11	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80643486	A	A	80643486	1	1	170	0	1	0	0	0	0	0	0	0	150	841	29	3		3	ACOT12	5	80643486	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	34997975	80643486	100271774	219	139342											
WDR36	134430	broad.mit.edu	37	chr5	110462460	110462460	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatgcttccttcagagcCagtactcctagaagaaataa	6	9	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110462460	T	T	110462460	3	4	170	1	0	0	0	0	1	0	0	0	17417	594	21	4	2825	4	WDR36	5	110462460	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	29818974	110462460	70452800	220	139343											
AQPEP	206338	broad.mit.edu	37	chr5	115335993	115335993	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actattttgttagcacattcCaaaataattcaaacattcaa	2	8	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115335993	G	G	115335993	1	3	170	0	1	0	0	0	0	0	0	0	836	609	21	4		4	AQPEP	5	115335993	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4873533	115335993	65579267	221	139344											
VDAC1	7416	broad.mit.edu	37	chr5	133311789	133311789	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagatccacccaagtctcCcagaagacagggatgacaga	10	12	1	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133311789	T	T	133311789	1	4	170	0	1	0	0	0	0	0	0	0	17273	638	22	4		4	VDAC1	5	133311789	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	17975796	133311789	47603471	222	139345											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139884598	139884598	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attttgcacattctgatcttCtttggaaaggaaaattattc	6	6	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139884598	T	T	139884598	1	4	170	0	1	0	0	0	0	0	0	0	629	928	32	4		4	ANKHD1-EIF4EBP3	5	139884598	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	6572809	139884598	41030662	223	139346											
APBB3	10307	broad.mit.edu	37	chr5	139943182	139943182	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgggccacccgttacctcCggtccagtgaactctccagg	10	17	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139943182	G	G	139943182	3	3	170	1	0	0	0	0	1	0	0	0	764	652	23	4	1234	4	APBB3	5	139943182	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	58584	139943182	40972078	224	139347											
PCDHGB2	56103	broad.mit.edu	37	chr5	140741751	140741751	+	Frame_Shift_Del	DEL	C	-	-													gaccgccgggagccctctgaCccccaggcaaaactgcagtt							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140741751	-	-	140741751	7	5	170	1	0	1	0	1	0	0	0	0	11657	506	18	0	2051	0	PCDHGB2	5	140741751	Frame_Shift_Del	DEL	C	TCGA-50-6592-01A-11D-1753-08	798569	140741751	40173509	225	139348											
JAKMIP2	9832	broad.mit.edu	37	chr5	147027952	147027952	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcaccagttcatttcgtTcatctccaagcaaggtattc	5	12	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147027952	G	G	147027952	3	3	170	1	0	0	0	0	1	0	0	0	8011	1783	62	5	1577	5	JAKMIP2	5	147027952	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	6286201	147027952	33887308	226	139349											
CAMK2A	815	broad.mit.edu	37	chr5	149636276	149636276	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgggaagctgacagcaGgcaagagtgccctgtccccg	13	15	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149636276	A	A	149636276	1	1	170	0	1	0	0	0	0	0	0	0	2625	1015	35	4		4	CAMK2A	5	149636276	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2608324	149636276	31278984	227	139350											
GEMIN5	25929	broad.mit.edu	37	chr5	154310952	154310952	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaccctcaggacaataagAacagaaaaccctctacttcc	4	15	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154310952	C	C	154310952	1	2	170	0	1	0	0	0	0	0	0	0	6395	261	9	5		5	GEMIN5	5	154310952	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	4674676	154310952	26604308	228	139351											
CYFIP2	26999	broad.mit.edu	37	chr5	156721744	156721744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggcttttgcagcctgGtggcacccgtcttgttcctc	13	13	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156721744	T	T	156721744	1	4	170	0	1	0	0	0	0	0	0	0	4171	1276	44	3		3	CYFIP2	5	156721744	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2410792	156721744	24193516	229	139352											
SOX30	11063	broad.mit.edu	37	chr5	157073589	157073589	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaacacttcaaacttgagGtaaaattttcttgcagctat	6	7	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157073589	C	C	157073589	1	2	170	0	1	0	0	0	0	0	0	0	15066	1276	44	4		4	SOX30	5	157073589	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	351845	157073589	23841671	230	139353											
FOXI1	2299	broad.mit.edu	37	chr5	169533524	169533524	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagaaggtgccccgcgacgAggacgacccgggtaaggagg	17	11	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169533524	T	T	169533524	3	4	170	1	0	0	0	0	1	0	0	0	6069	304	11	5	565	5	FOXI1	5	169533524	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	12459935	169533524	11381736	231	139354											
DBN1	1627	broad.mit.edu	37	chr5	176884408	176884408	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtgggcggccttggcaAgggtagcctagggctggcgc	20	10	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176884408	C	C	176884408	1	2	170	0	1	0	0	0	0	0	0	0	4285	87	3	5		5	DBN1	5	176884408	3'UTR	SNP	A	TCGA-50-6592-01A-11D-1753-08	7350884	176884408	4030852	232	139355											
RNF130	55819	broad.mit.edu	37	chr5	179405138	179405138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaagggagatgcccacCctgaaaaggaggcatacaaa	11	9	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179405138	A	A	179405138	1	1	170	0	1	0	0	0	0	0	0	0	13549	638	22	2		2	RNF130	5	179405138	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	2520730	179405138	1510122	233	139356											
TRIM41	90933	broad.mit.edu	37	chr5	180651801	180651801	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccattggaggaggtggtgCaggagtacaaggtgagagaa	18	4	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180651801	T	T	180651801	4	4	170	1	0	0	0	0	0	1	0	0	16640	711	25	4	804	4	TRIM41	5	180651801	Nonsense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1246663	180651801	263459	234	139357											
MYLK4	340156	broad.mit.edu	37	chr6	2693022	2693022	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttctaaagatgttacctgcGagggctgatgtccttttgct	10	8	1	2	rs147243450		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2693022	A	A	2693022	2	1	170	1	0	0	0	0	0	0	0	1	10153	1045	37	4		4	MYLK4	6	2693022	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08		2693022	168422045	235	139358											
BTN3A3	10384	broad.mit.edu	37	chr6	26450236	26450236	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgaagcctggaagagactCtgaagaaaaggagagaaaac	13	6	1	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26450236	T	T	26450236	1	4	170	0	1	0	0	0	0	0	0	0	1574	928	32	4		4	BTN3A3	6	26450236	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	23757214	26450236	144664831	236	139359											
DDR1	780	broad.mit.edu	37	chr6	30863109	30863109	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccctggtcttgccctattCaaggtctccctgtctgtcta	8	14	5	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30863109	T	T	30863109	1	4	170	0	1	0	0	0	0	0	0	0	4369	841	29	4		4	DDR1	6	30863109	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4412873	30863109	140251958	237	139360											
C6orf26	401251	broad.mit.edu	37	chr6	31731363	31731376	+	Intron	DEL	GGGAGGACCAGGGA	-	-													tgcccctctgtgtgaatgggGggaggaccagggagggagga							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31731376	-	-	31731363	6	5	170	0	1	1	0	1	0	0	0	0	2384	1247	43	0		0	C6orf26	6	31731363	Intron	DEL	GGGAGGACCAGGGA	TCGA-50-6592-01A-11D-1753-08	868254	31731363	139383704	238	139361											
ITPR3	3710	broad.mit.edu	37	chr6	33627307	33627307	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgcagtttcgggaccaccTggaggaggtgttgaaagggg	17	6	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33627307	A	A	33627307	3	1	170	1	0	0	0	0	1	0	0	0	7992	1580	55	5	718	5	ITPR3	6	33627307	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	1895944	33627307	137487760	239	139362											
ITPR3	3710	broad.mit.edu	37	chr6	33648293	33648293	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggagtggaggggccccAtgtgaggagcccccagccat	17	11	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33648293	T	T	33648293	1	4	170	0	1	0	0	0	0	0	0	0	7992	232	8	5		5	ITPR3	6	33648293	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	20986	33648293	137466774	240	139363											
C6orf106	64771	broad.mit.edu	37	chr6	34654528	34654528	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcagaggcgggcggatcacGaggtcaggagatcgagacca	18	9	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34654528	A	A	34654528	1	1	170	0	1	0	0	0	0	0	0	0	2342	1073	37	4		4	C6orf106	6	34654528	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1006235	34654528	136460539	241	139364											
C6orf153	88745	broad.mit.edu	37	chr6	42994880	42994880	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatttcagctaacatttgcaGaatgctaaccatgatactca	5	9	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42994880	A	A	42994880	1	1	170	0	1	0	0	0	0	0	0	0	2361	957	33	4		4	C6orf153	6	42994880	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	8340352	42994880	128120187	242	139365											
CUL9	23113	broad.mit.edu	37	chr6	43172631	43172631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagtctgcagaggggagGggctgctccttttatgtcat	14	8	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43172631	T	T	43172631	1	4	170	0	1	0	0	0	0	0	0	0	4094	1247	43	2		2	CUL9	6	43172631	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	177751	43172631	127942436	243	139366											
CAPN11	11131	broad.mit.edu	37	chr6	44144290	44144290	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccacatgacctccgcccctCtccttccaccgcccatctct	4	23	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44144290	T	T	44144290	1	4	170	0	1	0	0	0	0	0	0	0	2650	928	32	4		4	CAPN11	6	44144290	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	971659	44144290	126970777	244	139367											
NFKBIE	4794	broad.mit.edu	37	chr6	44228230	44228230	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccgaagcagcaattccatGagtggttggttcttctgaag	11	8	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44228230	C	C	44228230	2	2	170	1	0	0	0	0	0	0	0	1	10475	1277	45	4		4	NFKBIE	6	44228230	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	83940	44228230	126886837	245	139368											
RUNX2	860	broad.mit.edu	37	chr6	45480048	45480048	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttacccctcctacctgagcCagatgacgtccccgtccatc	6	19	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45480048	G	G	45480048	3	3	170	1	0	0	0	0	1	0	0	0	13859	595	21	4	963	4	RUNX2	6	45480048	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1251818	45480048	125635019	246	139369											
MEP1A	4224	broad.mit.edu	37	chr6	46802472	46802472	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgatgacctcatcatAtttgtggactttgaaggtac	8	6	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46802472	G	G	46802472	3	3	170	1	0	0	0	0	1	0	0	0	9568	439	16	5	1813	5	MEP1A	6	46802472	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	1322424	46802472	124312595	247	139370											
LRRC1	55227	broad.mit.edu	37	chr6	53660211	53660211	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accagctccgcgagctgcccGaggtaagggtccggcctcac	13	16	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53660211	C	C	53660211	3	2	170	1	0	0	0	0	1	0	0	0	9053	1059	37	4	159	4	LRRC1	6	53660211	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	6857739	53660211	117454856	248	139371											
BAI3	577	broad.mit.edu	37	chr6	70048967	70048967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagtgcatgtgagaaaatGctatgatgaaaaaaaattgt	9	3	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70048967	T	T	70048967	1	4	170	0	1	0	0	0	0	0	0	0	1305	1334	46	3		3	BAI3	6	70048967	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	16388756	70048967	101066100	249	139372											
HTR1E	3354	broad.mit.edu	37	chr6	87725133	87725133	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagaagatgctcatttgcatGactctggtggtcatcaccac	10	10	4	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87725133	C	C	87725133	3	2	170	1	0	0	0	0	1	0	0	0	7509	1290	45	4	83	4	HTR1E	6	87725133	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	17676166	87725133	83389934	250	139373											
C6orf165	154313	broad.mit.edu	37	chr6	88154185	88154185	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccattttactggtatttTgacatacttgctgggttgta	8	6	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88154185	G	G	88154185	1	3	170	0	1	0	0	0	0	0	0	0	2364	1827	63	5		5	C6orf165	6	88154185	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	429052	88154185	82960882	251	139374											
GABRR1	2569	broad.mit.edu	37	chr6	89909084	89909084	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagagaagcacttaccatGtcaacctctgagatgctatc	8	11	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89909084	A	A	89909084	2	1	170	1	0	0	0	0	0	0	0	1	6236	1368	48	4		4	GABRR1	6	89909084	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	1754899	89909084	81205983	252	139375											
ASCC3	10973	broad.mit.edu	37	chr6	101090426	101090426	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaaccattttggaaaaatCaatgattcaaatcagcattc	4	8	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101090426	T	T	101090426	1	4	170	0	1	0	0	0	0	0	0	0	1037	841	29	4		4	ASCC3	6	101090426	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	11181342	101090426	70024641	253	139376											
SLC22A16	85413	broad.mit.edu	37	chr6	110752419	110752419	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggtccacagagaacggCgccaggatgctggccaggcg	16	12	0	2	rs140728757	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110752419	A	A	110752419	2	1	170	1	0	0	0	0	0	0	0	1	14560	755	27	3		3	SLC22A16	6	110752419	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	9661993	110752419	60362648	254	139377											
LAMA4	3910	broad.mit.edu	37	chr6	112438875	112438875	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttaactctgggcctgatAttccctgttagccatctcca	7	12	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112438875	G	G	112438875	1	3	170	0	1	0	0	0	0	0	0	0	8680	464	16	5		5	LAMA4	6	112438875	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	1686456	112438875	58676192	255	139378											
GPRC6A	222545	broad.mit.edu	37	chr6	117127977	117127977	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatcactagcaatccacatCttatttatattcatttcaat	1	9	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117127977	T	T	117127977	2	4	170	1	0	0	0	0	0	0	0	1	6794	912	32	4		4	GPRC6A	6	117127977	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	4689102	117127977	53987090	256	139379											
GPRC6A	222545	broad.mit.edu	37	chr6	117128020	117128020	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttattgaagagatcaaaaAcatggaattgcctcagaaat	7	6	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117128020	G	G	117128020	3	3	170	1	0	0	0	0	1	0	0	0	6794	43	2	5	1948	5	GPRC6A	6	117128020	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	43	117128020	53987047	257	139380											
C6orf170	221322	broad.mit.edu	37	chr6	121427049	121427049	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggggagaaaagctagctTgaggattttaaatacacttt	10	6	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121427049	A	A	121427049	1	1	170	0	1	0	0	0	0	0	0	0	2367	1827	63	5		5	C6orf170	6	121427049	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	4299029	121427049	49688018	258	139381											
HIVEP2	3097	broad.mit.edu	37	chr6	143093059	143093059	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgcaagtcgcagacgcttCtttttgggtggcaacttctc	10	11	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143093059	G	G	143093059	3	3	170	1	0	0	0	0	1	0	0	0	7254	912	32	4	4547	4	HIVEP2	6	143093059	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	21666010	143093059	28022008	259	139382											
STXBP5	134957	broad.mit.edu	37	chr6	147581744	147581744	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttttgagtatatttttctCttgcagggttacattttgcc	7	6	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147581744	T	T	147581744	1	4	170	0	1	0	0	0	0	0	0	0	15474	928	32	4		4	STXBP5	6	147581744	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4488685	147581744	23533323	260	139383											
SYTL3	94120	broad.mit.edu	37	chr6	159178390	159178390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcacaacacagtccttcCgctggcatccgctccgggcc	9	18	0	0	rs139194153	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159178390	A	A	159178390	3	1	170	1	0	0	0	0	1	0	0	0	15603	652	23	1	1115	1	SYTL3	6	159178390	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	11596646	159178390	11936677	261	139384											
IGF2R	3482	broad.mit.edu	37	chr6	160477509	160477509	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgtggtcagtttcctgtgGaacacagaggctgcctgtcc	13	10	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160477509	A	A	160477509	4	1	170	1	0	0	0	0	0	1	0	0	7646	1183	41	4	2826	4	IGF2R	6	160477509	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1299119	160477509	10637558	262	139385											
PARK2	5071	broad.mit.edu	37	chr6	161807728	161807728	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaccagtctgcttcttgcTtttttagaatggaactctcc	7	11	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161807728	A	A	161807728	1	1	170	0	1	0	0	0	0	0	0	0	11543	1624	56	5		5	PARK2	6	161807728	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1330219	161807728	9307339	263	139386											
PDE10A	10846	broad.mit.edu	37	chr6	165956898	165956898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtaagatagaaaaagctgGtttaaaatgagatccacaag	9	6	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165956898	T	T	165956898	1	4	170	0	1	0	0	0	0	0	0	0	11724	1276	44	3		3	PDE10A	6	165956898	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	4149170	165956898	5158169	264	139387											
UNCX	340260	broad.mit.edu	37	chr7	1273285	1273285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcccgacgtgttcatgcGcgaggcgctggcgctgcgcc	14	15	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1273285	T	T	1273285	3	4	170	1	0	0	0	0	1	0	0	0	17124	1087	38	3	410	3	UNCX	7	1273285	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08		1273285	157865378	265	139388											
HDAC9	9734	broad.mit.edu	37	chr7	19035610	19035610	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaatgtcattgtgtactcTtatgccgtattctgattgcc	7	9	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19035610	C	C	19035610	1	2	170	0	1	0	0	0	0	0	0	0	7081	1624	56	5		5	HDAC9	7	19035610	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	17762325	19035610	140103053	266	139389											
ABCB5	340273	broad.mit.edu	37	chr7	20685483	20685483	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcatagcctttagggcCcaggagaaagaacttcaaag	10	9	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20685483	A	A	20685483	1	1	170	0	1	0	0	0	0	0	0	0	44	610	22	2		2	ABCB5	7	20685483	5'Flank	SNP	C	TCGA-50-6592-01A-11D-1753-08	1649873	20685483	138453180	267	139390											
DNAH11	8701	broad.mit.edu	37	chr7	21913129	21913129	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttgatcaggtaagaaagCgaagcaggctaggcagacaa	12	7	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21913129	T	T	21913129	1	4	170	0	1	0	0	0	0	0	0	0	4639	783	27	4		4	DNAH11	7	21913129	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1227646	21913129	137225534	268	139391											
ZNRF2	223082	broad.mit.edu	37	chr7	30395539	30395539	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaatcttcgttgaaaCcaccccctccctgtctcaca	5	15	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30395539	T	T	30395539	1	4	170	0	1	0	0	0	0	0	0	0	18341	522	18	4		4	ZNRF2	7	30395539	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	8482410	30395539	128743124	269	139392											
SFRP4	6424	broad.mit.edu	37	chr7	37949323	37949323	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacagatttttattacaaAagtaaacagctaaaaataca	3	5	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37949323	C	C	37949323	1	2	170	0	1	0	0	0	0	0	0	0	14276	29	1	5		5	SFRP4	7	37949323	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	7553784	37949323	121189340	270	139393											
ZNF713	349075	broad.mit.edu	37	chr7	56007632	56007632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaggaaaatccatactcGggagaaattatgtgaatata	8	6	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56007632	T	T	56007632	3	4	170	1	0	0	0	0	1	0	0	0	18245	1116	39	1	1240	1	ZNF713	7	56007632	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	18058309	56007632	103131031	271	139394											
SBDS	51119	broad.mit.edu	37	chr7	66459324	66459324	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaacttcatcgaggtcttTttcccttgtgagggcaggag	12	9	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66459324	C	C	66459324	3	2	170	1	0	0	0	0	1	0	0	0	13969	1850	64	5	635	5	SBDS	7	66459324	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	10451692	66459324	92679339	272	139395											
WBSCR17	64409	broad.mit.edu	37	chr7	71134995	71134995	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatgtctccgaaagaagAgcattaaggaaaagtttaaa	11	4	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71134995	G	G	71134995	2	3	170	1	0	0	0	0	0	0	0	1	17391	301	11	5		5	WBSCR17	7	71134995	Silent	SNP	A	TCGA-50-6592-01A-11D-1753-08	4675671	71134995	88003668	273	139396											
PCLO	27445	broad.mit.edu	37	chr7	82584974	82584974	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaatagtaggcaaaagAgggccatgtggtctgtgccg	13	8	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82584974	G	G	82584974	2	3	170	1	0	0	0	0	0	0	0	1	11677	291	11	5		5	PCLO	7	82584974	Silent	SNP	A	TCGA-50-6592-01A-11D-1753-08	11449979	82584974	76553689	274	139397											
GRM3	2913	broad.mit.edu	37	chr7	86493754	86493754	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagaatatggaaacagagCaaaagaacaaccctagtacc	7	10	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86493754	A	A	86493754	1	1	170	0	1	0	0	0	0	0	0	0	6864	725	25	3		3	GRM3	7	86493754	3'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	3908780	86493754	72644909	275	139398											
ABCB4	5244	broad.mit.edu	37	chr7	87104728	87104728	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcccagttcaaagtcgccCtccgcgctcgtggggcgcca	12	16	1	0	rs141141860		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87104728	T	T	87104728	2	4	170	1	0	0	0	0	0	0	0	1	43	680	24	4		4	ABCB4	7	87104728	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	610974	87104728	72033935	276	139399											
MGC26647	219557	broad.mit.edu	37	chr7	88423779	88423779	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggactgtgactgtgtcacatCgtcgagatacataactggaa	11	8	1	2	rs34781240	byFrequency;by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88423779	G	G	88423779	3	3	170	1	0	0	0	0	1	0	0	0	9643	884	31	4	287	4	MGC26647	7	88423779	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1319051	88423779	70714884	277	139400											
C7orf64	84060	broad.mit.edu	37	chr7	92158152	92158152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgagcggcggggagctaGggagtttatttgatcaccac	15	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92158152	T	T	92158152	3	4	170	1	0	0	0	0	1	0	0	0	2435	1000	35	2	27	2	C7orf64	7	92158152	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	3734373	92158152	66980511	278	139401											
CCDC132	55610	broad.mit.edu	37	chr7	92887606	92887606	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtatatatgggtcatttAaaaaaattaaaactgaattt	6	2	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92887606	G	G	92887606	1	3	170	0	1	0	0	0	0	0	0	0	2793	377	13	5		5	CCDC132	7	92887606	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	729454	92887606	66251057	279	139402											
GNG11	2791	broad.mit.edu	37	chr7	93555449	93555449	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaactatattgaagaacgttCtggagaggatcctctagtaa	10	6	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93555449	A	A	93555449	3	1	170	1	0	0	0	0	1	0	0	0	6588	913	32	3	149	3	GNG11	7	93555449	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	667843	93555449	65583214	280	139403											
PON1	5444	broad.mit.edu	37	chr7	94940832	94940832	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcttgaaatttaaacAactccactgtggacttggca	6	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94940832	G	G	94940832	3	3	170	1	0	0	0	0	1	0	0	0	12343	131	5	5	659	5	PON1	7	94940832	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	1385383	94940832	64197831	281	139404											
SMURF1	57154	broad.mit.edu	37	chr7	98639627	98639627	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctccatgttttgcttacCactgtctttgattaagtcta	5	11	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98639627	T	T	98639627	1	4	170	0	1	0	0	0	0	0	0	0	14933	609	21	4		4	SMURF1	7	98639627	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	3698795	98639627	60499036	282	139405											
TFR2	7036	broad.mit.edu	37	chr7	100239148	100239148	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatgcttgtgtcccctccTgaagcctgcaggctgtcccc	9	17	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100239148	A	A	100239148	1	1	170	0	1	0	0	0	0	0	0	0	15934	1595	55	5		5	TFR2	7	100239148	5'UTR	SNP	T	TCGA-50-6592-01A-11D-1753-08	1599521	100239148	58899515	283	139406											
PUS7	54517	broad.mit.edu	37	chr7	105142792	105142792	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtagcccttgaacacgaaCgggcaaggctaacgaggagc	13	10	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105142792	T	T	105142792	1	4	170	0	1	0	0	0	0	0	0	0	12941	551	19	4		4	PUS7	7	105142792	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4903644	105142792	53995871	284	139407											
SLC26A4	5172	broad.mit.edu	37	chr7	107350585	107350585	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgacggtccatgatgctAtactctatctacagaaccaa	6	10	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107350585	G	G	107350585	3	3	170	1	0	0	0	0	1	0	0	0	14633	449	16	5	2246	5	SLC26A4	7	107350585	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	2207793	107350585	51788078	285	139408											
DOCK4	9732	broad.mit.edu	37	chr7	111379142	111379142	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagagataggtaagcaaTtccagaattgtccttgtttt	9	7	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111379142	A	A	111379142	1	1	170	0	1	0	0	0	0	0	0	0	4729	1508	52	5		5	DOCK4	7	111379142	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	4028557	111379142	47759521	286	139409											
ANKRD7	56311	broad.mit.edu	37	chr7	117876904	117876904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtaaagcttcttcttcaGcaaggtgtggaattatgtta	9	5	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117876904	T	T	117876904	3	4	170	1	0	0	0	0	1	0	0	0	686	962	34	3	654	3	ANKRD7	7	117876904	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	6497762	117876904	41261759	287	139410											
FAM3C	10447	broad.mit.edu	37	chr7	121023022	121023022	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatcttacctgctaccctcAtgtttggtttttcagtttat	5	9	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121023022	G	G	121023022	3	3	170	1	0	0	0	0	1	0	0	0	5609	217	8	5	717	5	FAM3C	7	121023022	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	3146118	121023022	38115641	288	139411											
FAM40B	57464	broad.mit.edu	37	chr7	129107331	129107331	+	Intron	DEL	G	-	-													ttatttcaaggggctattttGgggtggttgagaaaattaca							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129107331	-	-	129107331	6	5	170	0	1	1	0	1	0	0	0	0	5612	1363	47	0		0	FAM40B	7	129107331	Intron	DEL	G	TCGA-50-6592-01A-11D-1753-08	8084309	129107331	30031332	289	139412											
CHCHD3	54927	broad.mit.edu	37	chr7	132470356	132470356	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaaaaaaatgttccatctCtggaattaacgttgatggtg	10	5	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132470356	G	G	132470356	1	3	170	0	1	0	0	0	0	0	0	0	3348	928	32	4		4	CHCHD3	7	132470356	3'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	3363025	132470356	26668307	290	139413											
DENND2A	27147	broad.mit.edu	37	chr7	140273860	140273860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattcaaaggagactgacCgggggataactggtggtgcc	15	7	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140273860	A	A	140273860	1	1	170	0	1	0	0	0	0	0	0	0	4469	667	23	1		1	DENND2A	7	140273860	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	7803504	140273860	18864803	291	139414											
PIP	5304	broad.mit.edu	37	chr7	142836239	142836239	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtatactgcctgcctatgTgacgacaatccaaaaacctt	6	11	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142836239	G	G	142836239	3	3	170	1	0	0	0	0	1	0	0	0	12030	1702	59	5	283	5	PIP	7	142836239	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	2562379	142836239	16302424	292	139415											
PIP	5304	broad.mit.edu	37	chr7	142836738	142836738	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcctaaaggtagaataatgGaagccctgtctgtttgccac	9	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142836738	T	T	142836738	1	4	170	0	1	0	0	0	0	0	0	0	12030	1189	41	3		3	PIP	7	142836738	3'UTR	SNP	G	TCGA-50-6592-01A-11D-1753-08	499	142836738	16301925	293	139416											
CLCN1	1180	broad.mit.edu	37	chr7	143044081	143044081	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacctggggtggattgttctAtcaaatgaagatattgctaa	10	5	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143044081	T	T	143044081	1	4	170	0	1	0	0	0	0	0	0	0	3493	464	16	5		5	CLCN1	7	143044081	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	207343	143044081	16094582	294	139417											
NOBOX	135935	broad.mit.edu	37	chr7	144098346	144098346	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgatgttggggccagacCcatggcattaggctttttct	12	8	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144098346	T	T	144098346	3	4	170	1	0	0	0	0	1	0	0	0	10607	623	22	4	1370	4	NOBOX	7	144098346	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1054265	144098346	15040317	295	139418											
TPK1	27010	broad.mit.edu	37	chr7	144380113	144380113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatttcaatacaggaggcaCagagcaatatctttcaaatg	7	8	4	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144380113	A	A	144380113	1	1	170	0	1	0	0	0	0	0	0	0	16528	493	17	3		3	TPK1	7	144380113	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	281767	144380113	14758550	296	139419											
NOS3	4846	broad.mit.edu	37	chr7	150703923	150703923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggggctggggctgggccTagcctgtatccccagggccc	16	15	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150703923	C	C	150703923	1	2	170	0	1	0	0	0	0	0	0	0	10639	1537	53	5		5	NOS3	7	150703923	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	6323810	150703923	8434740	297	139420											
AGAP3	116988	broad.mit.edu	37	chr7	150814309	150814309	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgggccctgaggccggccActcctccagctcctgcccac	10	21	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150814309	T	T	150814309	1	4	170	0	1	0	0	0	0	0	0	0	369	174	6	5		5	AGAP3	7	150814309	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	110386	150814309	8324354	298	139421											
GALNT11	63917	broad.mit.edu	37	chr7	151805010	151805010	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttaggccgtctggggctggGagggtggcagtcgtgtttca	19	7	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151805010	A	A	151805010	1	1	170	0	1	0	0	0	0	0	0	0	6271	1189	41	4		4	GALNT11	7	151805010	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	990701	151805010	7333653	299	139422											
CSMD1	64478	broad.mit.edu	37	chr8	3000195	3000195	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaaactgaatatgtgcAcctatggaaaaacatgcaaa	7	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3000195	T	T	3000195	2	4	170	1	0	0	0	0	0	0	0	1	3978	173	6	5		5	CSMD1	8	3000195	Silent	SNP	A	TCGA-50-6592-01A-11D-1753-08		3000195	143363827	300	139423											
DLC1	10395	broad.mit.edu	37	chr8	13357118	13357118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagaaacttggttactttGtatgatgggcagtgcctttt	11	5	0	3	rs150963046		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13357118	T	T	13357118	3	4	170	1	0	0	0	0	1	0	0	0	4590	1386	48	3	4276	3	DLC1	8	13357118	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	10356923	13357118	133006904	301	139424											
PSD3	23362	broad.mit.edu	37	chr8	18430338	18430338	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttcattagagatgaacaTtgtcattcgacgatcaccaa	6	9	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18430338	C	C	18430338	1	2	170	0	1	0	0	0	0	0	0	0	12754	1508	52	5		5	PSD3	8	18430338	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	5073220	18430338	127933684	302	139425											
EPB49	2039	broad.mit.edu	37	chr8	21926532	21926532	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctccattcacagcgctcGctgtcacccaaatccacatc	4	19	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21926532	T	T	21926532	2	4	170	1	0	0	0	0	0	0	0	1	5201	1074	38	3		3	EPB49	8	21926532	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	3496194	21926532	124437490	303	139426											
HR	55806	broad.mit.edu	37	chr8	21986719	21986719	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggggctctcccagaggggGgtccctggagcataaccatc	14	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21986719	C	C	21986719	1	2	170	0	1	0	0	0	0	0	0	0	7414	1247	43	4		4	HR	8	21986719	5'UTR	SNP	G	TCGA-50-6592-01A-11D-1753-08	60187	21986719	124377303	304	139427											
REEP4	80346	broad.mit.edu	37	chr8	21998133	21998133	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacacacccaaacccccacgCtcacatattcacgaatgttc	3	17	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21998133	G	G	21998133	1	3	170	0	1	0	0	0	0	0	0	0	13315	812	28	4		4	REEP4	8	21998133	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	11414	21998133	124365889	305	139428											
BMP1	649	broad.mit.edu	37	chr8	22069310	22069310	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagactggatagtgggggtGggcggaaggcaacgcaccat	17	8	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22069310	A	A	22069310	1	1	170	0	1	0	0	0	0	0	0	0	1462	1363	47	4		4	BMP1	8	22069310	3'UTR	SNP	G	TCGA-50-6592-01A-11D-1753-08	71177	22069310	124294712	306	139429											
STC1	6781	broad.mit.edu	37	chr8	23702578	23702578	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaagaaagagagtgcataTggtggtcacccagtgagagc	13	7	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23702578	C	C	23702578	1	2	170	0	1	0	0	0	0	0	0	0	15393	1479	51	5		5	STC1	8	23702578	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1633268	23702578	122661444	307	139430											
TEX15	56154	broad.mit.edu	37	chr8	30694993	30694993	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatacagatgggttctggaGaagtcatgcatgaggaattt	14	4	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30694993	A	A	30694993	3	1	170	1	0	0	0	0	1	0	0	0	15901	942	33	4	719	4	TEX15	8	30694993	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	6992415	30694993	115669029	308	139431											
NRG1	3084	broad.mit.edu	37	chr8	32600293	32600293	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcctgaataggagcatGctcagttggtgctgctttct	11	10	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32600293	T	T	32600293	1	4	170	0	1	0	0	0	0	0	0	0	10742	1334	46	3		3	NRG1	8	32600293	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1905300	32600293	113763729	309	139432											
CHRNB3	1142	broad.mit.edu	37	chr8	42563855	42563855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtccacccatgattctttTacagccaccacaggtttcaa	6	13	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42563855	A	A	42563855	1	1	170	0	1	0	0	0	0	0	0	0	3423	1769	61	5		5	CHRNB3	8	42563855	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	9963562	42563855	103800167	310	139433											
CHRNA6	8973	broad.mit.edu	37	chr8	42611772	42611772	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atatccacttttgatccaatGattagaagatcaatttcagc	5	8	2	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42611772	A	A	42611772	2	1	170	1	0	0	0	0	0	0	0	1	3418	1280	45	4		4	CHRNA6	8	42611772	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	47917	42611772	103752250	311	139434											
MCM4	4173	broad.mit.edu	37	chr8	48880031	48880031	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaggtccagcctggggacaGagtgaatgttacaggtaaga	14	7	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48880031	A	A	48880031	3	1	170	1	0	0	0	0	1	0	0	0	9482	942	33	4	1194	4	MCM4	8	48880031	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	6268259	48880031	97483991	312	139435											
UBXN2B	137886	broad.mit.edu	37	chr8	59339148	59339148	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccagggttacttttactagGccttgccaaaaaactgctgt	8	10	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59339148	C	C	59339148	1	2	170	0	1	0	0	0	0	0	0	0	17041	1218	42	4		4	UBXN2B	8	59339148	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	10459117	59339148	87024874	313	139436											
NKAIN3	286183	broad.mit.edu	37	chr8	63769576	63769576	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtctccacttgcttcaagGttctcttcttgttcttcttt	5	11	6	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63769576	C	C	63769576	1	2	170	0	1	0	0	0	0	0	0	0	10532	1276	44	4		4	NKAIN3	8	63769576	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	4430428	63769576	82594446	314	139437											
PREX2	80243	broad.mit.edu	37	chr8	68972959	68972959	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attggagagattcacaggccTgaggaaggcgtgcacttggg	16	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68972959	G	G	68972959	2	3	170	1	0	0	0	0	0	0	0	1	12583	1567	55	5		5	PREX2	8	68972959	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08	5203383	68972959	77391063	315	139438											
PREX2	80243	broad.mit.edu	37	chr8	69026602	69026602	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatggaaaaatgagaatcaaGatatgtgctactgattggaa	10	3	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69026602	T	T	69026602	1	4	170	0	1	0	0	0	0	0	0	0	12583	957	33	3		3	PREX2	8	69026602	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	53643	69026602	77337420	316	139439											
SULF1	23213	broad.mit.edu	37	chr8	70515708	70515708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagctgcttgtgaatagCatattgatggagatgcactc	10	8	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70515708	A	A	70515708	1	1	170	0	1	0	0	0	0	0	0	0	15488	725	25	3		3	SULF1	8	70515708	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1489106	70515708	75848314	317	139440											
SLCO5A1	81796	broad.mit.edu	37	chr8	70585461	70585461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaacgaaacgacgtcacGttgtactcccagcaagaacc	7	13	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70585461	T	T	70585461	3	4	170	1	0	0	0	0	1	0	0	0	14845	1136	40	3	360	3	SLCO5A1	8	70585461	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	69753	70585461	75778561	318	139441											
HNF4G	3174	broad.mit.edu	37	chr8	76459718	76459718	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcctataccttctttttAtcgaaccgaatttgacaata	4	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76459718	T	T	76459718	1	4	170	0	1	0	0	0	0	0	0	0	7321	464	16	5		5	HNF4G	8	76459718	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	5874257	76459718	69904304	319	139442											
SNX16	64089	broad.mit.edu	37	chr8	82720655	82720655	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtgggaatgacaactttgGttgtggaggaaacttcaggg	16	5	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82720655	A	A	82720655	1	1	170	0	1	0	0	0	0	0	0	0	15001	1276	44	4		4	SNX16	8	82720655	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	6260937	82720655	63643367	320	139443											
CNGB3	54714	broad.mit.edu	37	chr8	87673970	87673970	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagtggttgatctagcatcTcaaacatccaggtgcttagg	11	8	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87673970	C	C	87673970	1	2	170	0	1	0	0	0	0	0	0	0	3633	1566	54	5		5	CNGB3	8	87673970	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	4953315	87673970	58690052	321	139444											
TMEM67	91147	broad.mit.edu	37	chr8	94808003	94808003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtgagtccagaatcaaGtcctgcccgggcagcatact	10	13	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94808003	T	T	94808003	1	4	170	0	1	0	0	0	0	0	0	0	16319	1044	36	3		3	TMEM67	8	94808003	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	7134033	94808003	51556019	322	139445											
MTDH	92140	broad.mit.edu	37	chr8	98718983	98718983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgatgatcaaaaggtgaGtataagagattcctgggtgt	12	5	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98718983	T	T	98718983	1	4	170	0	1	0	0	0	0	0	0	0	10011	1044	36	3		3	MTDH	8	98718983	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3910980	98718983	47645039	323	139446											
RGS22	26166	broad.mit.edu	37	chr8	101020769	101020769	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccaatgtcaagagtggcaGaaggagcaacgtatgtggca	14	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101020769	A	A	101020769	3	1	170	1	0	0	0	0	1	0	0	0	13414	942	33	4	1651	4	RGS22	8	101020769	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2301786	101020769	45343253	324	139447											
CSMD3	114788	broad.mit.edu	37	chr8	113812417	113812417	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttaaccttgaaaccaacaGatccaacactttcgtccgtt	5	12	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113812417	T	T	113812417	3	4	170	1	0	0	0	0	1	0	0	0	3980	942	33	3	9413	3	CSMD3	8	113812417	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	12791648	113812417	32551605	325	139448											
MTBP	27085	broad.mit.edu	37	chr8	121457668	121457668	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagcgcgcgtctgtttggaTgtggaagccgagacctaaag	14	8	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121457668	A	A	121457668	1	1	170	0	1	0	0	0	0	0	0	0	10006	1479	51	5		5	MTBP	8	121457668	5'UTR	SNP	T	TCGA-50-6592-01A-11D-1753-08	7645251	121457668	24906354	326	139449											
GSDMC	56169	broad.mit.edu	37	chr8	130762329	130762329	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctttaggatggcaccacCagggccatccaaatgacctg	9	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130762329	G	G	130762329	3	3	170	1	0	0	0	0	1	0	0	0	6884	594	21	4	418	4	GSDMC	8	130762329	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	9304661	130762329	15601693	327	139450											
FAM135B	51059	broad.mit.edu	37	chr8	139209928	139209928	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttccctaaggggtgaaacaGaaacagaggctgaggaatat	12	7	0	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139209928	A	A	139209928	1	1	170	0	1	0	0	0	0	0	0	0	5495	957	33	4		4	FAM135B	8	139209928	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	8447599	139209928	7154094	328	139451											
FLJ43860	389690	broad.mit.edu	37	chr8	142504897	142504897	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcccacttgctgtgggaGgggaggcccaccgtggcctt	16	12	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142504897	A	A	142504897	1	1	170	0	1	0	0	0	0	0	0	0	5987	1015	35	4		4	FLJ43860	8	142504897	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3294969	142504897	3859125	329	139452											
GPAA1	8733	broad.mit.edu	37	chr8	145139236	145139236	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacgcttcagggcaaggtGgggctgcctgcctgcctgag	16	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145139236	A	A	145139236	1	1	170	0	1	0	0	0	0	0	0	0	6652	1363	47	4		4	GPAA1	8	145139236	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2634339	145139236	1224786	330	139453											
GLDC	2731	broad.mit.edu	37	chr9	6605137	6605137	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaggtatacctaccccactCtgatgagctctctccacgag	7	14	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6605137	T	T	6605137	2	4	170	1	0	0	0	0	0	0	0	1	6497	912	32	4		4	GLDC	9	6605137	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08		6605137	134608294	331	139454											
IFNB1	3456	broad.mit.edu	37	chr9	21077565	21077565	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggttctcaacaatagtctCattccagccagtgctagatg	9	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21077565	T	T	21077565	3	4	170	1	0	0	0	0	1	0	0	0	7616	835	29	4	263	4	IFNB1	9	21077565	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	14472428	21077565	120135866	332	139455											
LRRC19	64922	broad.mit.edu	37	chr9	26998234	26998234	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttcagtaaaattacattgGacttcctagaaaaacaaaaa	4	6	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26998234	T	T	26998234	2	4	170	1	0	0	0	0	0	0	0	1	9062	1161	41	3		3	LRRC19	9	26998234	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	5920669	26998234	114215197	333	139456											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69382301	69382301	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacaagcagcacaggtagcGggggctcagcccggggtggg	20	10	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69382301	C	C	69382301	1	2	170	0	1	0	0	0	0	0	0	0	650	1131	39	4		4	ANKRD20A4	9	69382301	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	42384067	69382301	71831130	334	139457											
PIP5K1B	8395	broad.mit.edu	37	chr9	71438868	71438868	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcagccaaaccttgaaatAcaaactgggaggttgtcatt	8	9	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71438868	T	T	71438868	1	4	170	0	1	0	0	0	0	0	0	0	12035	406	14	5		5	PIP5K1B	9	71438868	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	2056567	71438868	69774563	335	139458											
TMEM2	23670	broad.mit.edu	37	chr9	74359946	74359946	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgcctacctgtagcccagtCcttggatcagttcacttccc	7	15	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74359946	G	G	74359946	3	3	170	1	0	0	0	0	1	0	0	0	16244	855	30	4	3213	4	TMEM2	9	74359946	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2921078	74359946	66853485	336	139459											
TRPM6	140803	broad.mit.edu	37	chr9	77436693	77436693	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacagtctcccacactgacAggatgacgttgggaccgcct	11	13	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77436693	G	G	77436693	3	3	170	1	0	0	0	0	1	0	0	0	16715	188	7	5	5294	5	TRPM6	9	77436693	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	3076747	77436693	63776738	337	139460											
DAPK1	1612	broad.mit.edu	37	chr9	90255223	90255223	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttaacagcctaagtgggGcctccccatttcttggagac	9	11	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90255223	C	C	90255223	3	2	170	1	0	0	0	0	1	0	0	0	4268	1203	42	4	666	4	DAPK1	9	90255223	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	12818530	90255223	50958208	338	139461											
FAM75C1	441452	broad.mit.edu	37	chr9	90535180	90535180	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagcctcctggggccaCaccttgaaaaaggtgacttt	10	13	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90535180	T	T	90535180	3	4	170	1	0	0	0	0	1	0	0	0	5676	478	17	4	372	4	FAM75C1	9	90535180	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	279957	90535180	50678251	339	139462											
COL15A1	1306	broad.mit.edu	37	chr9	101749598	101749598	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccctccagcagctcaccgTgcaccccgaccccaggactc	7	22	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101749598	A	A	101749598	3	1	170	1	0	0	0	0	1	0	0	0	3704	1696	59	5	685	5	COL15A1	9	101749598	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	11214418	101749598	39463833	340	139463											
FKBP15	23307	broad.mit.edu	37	chr9	115933898	115933898	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcagcagcttcaaccccaGacatctgggacttgttcttc	8	13	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115933898	A	A	115933898	3	1	170	1	0	0	0	0	1	0	0	0	5962	942	33	4	1058	4	FKBP15	9	115933898	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	14184300	115933898	25279533	341	139464											
WDR31	114987	broad.mit.edu	37	chr9	116091332	116091332	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactttctccctcctcactcActccctctctgctcaggaac	3	19	5	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116091332	T	T	116091332	1	4	170	0	1	0	0	0	0	0	0	0	17413	174	6	5		5	WDR31	9	116091332	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	157434	116091332	25122099	342	139465											
ZNF618	114991	broad.mit.edu	37	chr9	116812104	116812104	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgaggtgaaggagtcctgggCcgaggaggccgacttcgagc	18	10	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116812104	G	G	116812104	3	3	170	1	0	0	0	0	1	0	0	0	18169	739	26	4	2297	4	ZNF618	9	116812104	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	720772	116812104	24401327	343	139466											
ASTN2	23245	broad.mit.edu	37	chr9	119382627	119382627	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagttggggagcccattGgcatcaaaggcgctgaggtc	15	10	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119382627	A	A	119382627	2	1	170	1	0	0	0	0	0	0	0	1	1069	1335	47	4		4	ASTN2	9	119382627	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	2570523	119382627	21830804	344	139467											
DBC1	1620	broad.mit.edu	37	chr9	121930551	121930551	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagctaccatgagtgggtcTgtgagttacagttatccaac	10	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121930551	A	A	121930551	1	1	170	0	1	0	0	0	0	0	0	0	4280	1595	55	5		5	DBC1	9	121930551	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	2547924	121930551	19282880	345	139468											
SH2D3C	10044	broad.mit.edu	37	chr9	130536661	130536661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggctccaaatgggactgCctactgatggaagctgagga	13	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130536661	A	A	130536661	3	1	170	1	0	0	0	0	1	0	0	0	14347	738	26	3	2636	3	SH2D3C	9	130536661	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	8606110	130536661	10676770	346	139469											
LCN2	3934	broad.mit.edu	37	chr9	130914413	130914413	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctcatctactcattcaacGatatttatgtggtgtctgcc	7	11	5	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130914413	A	A	130914413	1	1	170	0	1	0	0	0	0	0	0	0	8756	1073	37	4		4	LCN2	9	130914413	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	377752	130914413	10299018	347	139470											
C9orf96	169436	broad.mit.edu	37	chr9	136251403	136251403	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgctctatcctggcagctGatgccactgctgaagctgcg	11	13	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136251403	A	A	136251403	2	1	170	1	0	0	0	0	0	0	0	1	2534	1277	45	4		4	C9orf96	9	136251403	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	5336990	136251403	4962028	348	139471											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136402557	136402557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatccaatagcctggagGggggcaccgacgccacggcc	13	15	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136402557	T	T	136402557	3	4	170	1	0	0	0	0	1	0	0	0	275	1232	43	2	127	2	ADAMTSL2	9	136402557	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	151154	136402557	4810874	349	139472											
FCN1	2219	broad.mit.edu	37	chr9	137804499	137804499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagagttaggcggggcagGccgaggtcccacagcaccgg	16	12	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137804499	T	T	137804499	1	4	170	0	1	0	0	0	0	0	0	0	5848	1218	42	3		3	FCN1	9	137804499	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1401942	137804499	3408932	350	139473											
PNPLA7	375775	broad.mit.edu	37	chr9	140354901	140354901	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaagccagactggggtGtcgatgccgcagtgaggact	17	8	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140354901	A	A	140354901	3	1	170	1	0	0	0	0	1	0	0	0	12265	1377	48	4	59	4	PNPLA7	9	140354901	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2550402	140354901	858530	351	139474											
CACNA1B	774	broad.mit.edu	37	chr9	140962971	140962971	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtggctgcctcctccctgTgcgtctcgcccggaagcatt	11	16	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140962971	C	C	140962971	1	2	170	0	1	0	0	0	0	0	0	0	2565	1711	59	5		5	CACNA1B	9	140962971	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	608070	140962971	250460	352	139475											
DIP2C	22982	broad.mit.edu	37	chr10	468734	468734	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggcgtttacacaacagGcacagaaagacaccgtgaag	10	10	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	468734	T	T	468734	1	4	170	0	1	0	0	0	0	0	0	0	4569	1218	42	3		3	DIP2C	10	468734	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08		468734	135066013	353	139476											
GTPBP4	23560	broad.mit.edu	37	chr10	1043054	1043054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttggagtaagatgaatatcAccataggcctggactgtaac	11	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1043054	T	T	1043054	1	4	170	0	1	0	0	0	0	0	0	0	6947	174	6	5		5	GTPBP4	10	1043054	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	574320	1043054	134491693	354	139477											
WDR37	22884	broad.mit.edu	37	chr10	1126036	1126036	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagctgagtaagggccaactCaaaacaaaaggtaaggtgaa	12	6	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1126036	G	G	1126036	2	3	170	1	0	0	0	0	0	0	0	1	17418	813	29	4		4	WDR37	10	1126036	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	82982	1126036	134408711	355	139478											
AKR1C3	8644	broad.mit.edu	37	chr10	5141579	5141579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtgtcaaacttcaacCgcaggcagctggagatgatc	13	9	2	2	rs35575889	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5141579	T	T	5141579	3	4	170	1	0	0	0	0	1	0	0	0	471	652	23	4	526	4	AKR1C3	10	5141579	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	4015543	5141579	130393168	356	139479											
ITIH2	3698	broad.mit.edu	37	chr10	7751045	7751045	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctactattacttctcggAtggccaccaccatgatccag	7	13	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7751045	G	G	7751045	3	3	170	1	0	0	0	0	1	0	0	0	7974	333	12	5	267	5	ITIH2	10	7751045	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	2609466	7751045	127783702	357	139480											
ITGA8	8516	broad.mit.edu	37	chr10	15730041	15730041	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgatctttctgttgtctgTcaaagaagataggaagagtt	10	5	5	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15730041	A	A	15730041	1	1	170	0	1	0	0	0	0	0	0	0	7952	1682	58	5		5	ITGA8	10	15730041	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	7978996	15730041	119804706	358	139481											
CUBN	8029	broad.mit.edu	37	chr10	16871067	16871067	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaacaggacaggaagtttGattcaacagcatataagccg	10	7	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16871067	A	A	16871067	1	1	170	0	1	0	0	0	0	0	0	0	4084	1305	45	4		4	CUBN	10	16871067	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1141026	16871067	118663680	359	139482											
NEBL	10529	broad.mit.edu	37	chr10	21098860	21098860	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaaatcaacactcatcAagaaggaatttaaaaaagga	8	5	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21098860	C	C	21098860	1	2	170	0	1	0	0	0	0	0	0	0	10398	145	5	5		5	NEBL	10	21098860	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	4227793	21098860	114435887	360	139483											
PIP4K2A	5305	broad.mit.edu	37	chr10	22828995	22828995	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgaagtacacctccttccTaggcgagtctgcagagacag	10	12	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22828995	C	C	22828995	3	2	170	1	0	0	0	0	1	0	0	0	12031	1521	53	5	183	5	PIP4K2A	10	22828995	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	1730135	22828995	112705752	361	139484											
GAD2	2572	broad.mit.edu	37	chr10	26569922	26569922	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagtgccacccgcttatgtGatttctttattttagggcca	10	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26569922	A	A	26569922	1	1	170	0	1	0	0	0	0	0	0	0	6240	1305	45	4		4	GAD2	10	26569922	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3740927	26569922	108964825	362	139485											
CCDC7	221016	broad.mit.edu	37	chr10	32751962	32751962	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagtggtttcagtggcaggtCaatcagatggaagaagtaag	14	4	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32751962	A	A	32751962	2	1	170	1	0	0	0	0	0	0	0	1	2870	813	29	3		3	CCDC7	10	32751962	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	6182040	32751962	102782785	363	139486											
CCDC7	221016	broad.mit.edu	37	chr10	32854468	32854468	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagtaaataccttttttcCcccttcttacttcctagaaa	2	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32854468	T	T	32854468	1	4	170	0	1	0	0	0	0	0	0	0	2870	638	22	4		4	CCDC7	10	32854468	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	102506	32854468	102680279	364	139487											
ANKRD30A	91074	broad.mit.edu	37	chr10	37486074	37486074	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtcctaaacaaaccaaaaGaaaactttccaaatctaaag	4	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37486074	A	A	37486074	1	1	170	0	1	0	0	0	0	0	0	0	658	957	33	4		4	ANKRD30A	10	37486074	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	4631606	37486074	98048673	365	139488											
C10orf71	118461	broad.mit.edu	37	chr10	50531291	50531291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgtcacggctccagcaGcttcctcccagcagccaatg	10	17	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50531291	T	T	50531291	3	4	170	1	0	0	0	0	1	0	0	0	1625	971	34	3	703	3	C10orf71	10	50531291	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	13045217	50531291	85003456	366	139489											
OGDHL	55753	broad.mit.edu	37	chr10	50944528	50944528	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcaggggcccgtgctgCggccccatcttcaggaatca	12	15	4	0	rs140281439	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50944528	T	T	50944528	3	4	170	1	0	0	0	0	1	0	0	0	10935	768	27	4	415	4	OGDHL	10	50944528	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	413237	50944528	84590219	367	139490											
C10orf11	83938	broad.mit.edu	37	chr10	77542697	77542697	+	Translation_Start_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catctgctcagtgtagccatCaagaatttgaatgtcaatat	7	8	4	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77542697	G	G	77542697	1	3	170	1	0	0	0	0	0	0	0	0	1593	841	29	4		4	C10orf11	10	77542697	Translation_Start_Site	SNP	C	TCGA-50-6592-01A-11D-1753-08	26598169	77542697	57992050	368	139491											
LIPA	3988	broad.mit.edu	37	chr10	90988179	90988179	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacattcattgtttaggAggcagtagcaccaagcttca	8	8	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90988179	T	T	90988179	1	4	170	0	1	0	0	0	0	0	0	0	8892	319	11	5		5	LIPA	10	90988179	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	13445482	90988179	44546568	369	139492											
EXOC6	54536	broad.mit.edu	37	chr10	94695455	94695455	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaaaattttaaacttattAtaagtctggcagattaaaag	5	5	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94695455	G	G	94695455	1	3	170	0	1	0	0	0	0	0	0	0	5350	464	16	5		5	EXOC6	10	94695455	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	3707276	94695455	40839292	370	139493											
SEC31B	25956	broad.mit.edu	37	chr10	102249432	102249432	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcattggtgaatgtgcgaGggagtgggtagggaaagatg	20	2	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102249432	A	A	102249432	1	1	170	0	1	0	0	0	0	0	0	0	14112	1015	35	4		4	SEC31B	10	102249432	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	7553977	102249432	33285315	371	139494											
PDCD11	22984	broad.mit.edu	37	chr10	105194134	105194134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaaacagtgcctggtcGgggaaggggagcggcaggaa	20	6	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105194134	T	T	105194134	1	4	170	0	1	0	0	0	0	0	0	0	11711	1131	39	1		1	PDCD11	10	105194134	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2944702	105194134	30340613	372	139495											
SMC3	9126	broad.mit.edu	37	chr10	112343559	112343559	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctagacctaaattatgcAaaaaatttaaagcagtttgc	6	6	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112343559	C	C	112343559	1	2	170	0	1	0	0	0	0	0	0	0	14898	145	5	5		5	SMC3	10	112343559	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	7149425	112343559	23191188	373	139496											
GFRA1	2674	broad.mit.edu	37	chr10	117849413	117849413	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcacatcggagccattgcCaaaggcttgaattgcatttt	10	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117849413	G	G	117849413	3	3	170	1	0	0	0	0	1	0	0	0	6411	594	21	4	373	4	GFRA1	10	117849413	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	5505854	117849413	17685334	374	139497											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118228671	118228671	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttctaattacataagtAatcacctttcattttctgtc	2	9	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118228671	T	T	118228671	1	4	170	0	1	0	0	0	0	0	0	0	12247	377	13	5		5	PNLIPRP3	10	118228671	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	379258	118228671	17306076	375	139498											
OR51E2	81285	broad.mit.edu	37	chr11	4703272	4703272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggaaggcagttgcagaaCcgttcgtattatcagaaaat	10	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4703272	A	A	4703272	3	1	170	1	0	0	0	0	1	0	0	0	11189	507	18	3	296	3	OR51E2	11	4703272	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08		4703272	130303244	376	139499											
OR10A5	144124	broad.mit.edu	37	chr11	6867752	6867752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttatcattatcctacaCtgttgtgactcccatgttga	7	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6867752	A	A	6867752	3	1	170	1	0	0	0	0	1	0	0	0	10987	565	20	3	841	3	OR10A5	11	6867752	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2164480	6867752	128138764	377	139500											
OR10A4	283297	broad.mit.edu	37	chr11	6897837	6897837	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatatgagatttcttctacCttcctagattttgaatgccc	5	10	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6897837	G	G	6897837	1	3	170	0	1	0	0	0	0	0	0	0	10986	696	24	4		4	OR10A4	11	6897837	5'Flank	SNP	C	TCGA-50-6592-01A-11D-1753-08	30085	6897837	128108679	378	139501											
NLRP14	338323	broad.mit.edu	37	chr11	7059931	7059931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattcctaaaggagaccatGgaacctgagcatggcctgac	10	10	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7059931	A	A	7059931	3	1	170	1	0	0	0	0	1	0	0	0	10571	1348	47	4	116	4	NLRP14	11	7059931	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	162094	7059931	127946585	379	139502											
SBF2	81846	broad.mit.edu	37	chr11	9917629	9917629	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatacatgcgaactaacaTctgggatacactgtttactg	7	9	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9917629	C	C	9917629	1	2	170	0	1	0	0	0	0	0	0	0	13971	1450	50	5		5	SBF2	11	9917629	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	2857698	9917629	125088887	380	139503											
CTR9	9646	broad.mit.edu	37	chr11	10790096	10790096	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattgttaagcagatgtttTcttagccattctggccctgt	8	9	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10790096	C	C	10790096	1	2	170	0	1	0	0	0	0	0	0	0	4058	1798	62	5		5	CTR9	11	10790096	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	872467	10790096	124216420	381	139504											
PARVA	55742	broad.mit.edu	37	chr11	12530276	12530276	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttgctgatatttagttttCatttattgggattgcaggag	10	3	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12530276	T	T	12530276	1	4	170	0	1	0	0	0	0	0	0	0	11562	841	29	4		4	PARVA	11	12530276	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1740180	12530276	122476240	382	139505											
RASSF10	644943	broad.mit.edu	37	chr11	13031141	13031141	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccatggatccttcggaaaaGaagatatcggtgtggatctg	13	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13031141	C	C	13031141	3	2	170	1	0	0	0	0	1	0	0	0	13193	933	33	4	348	4	RASSF10	11	13031141	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	500865	13031141	121975375	383	139506											
KCNJ11	3767	broad.mit.edu	37	chr11	17408921	17408921	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacccacgccgttctccaTggggatgtccacctggtgga	12	15	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17408921	C	C	17408921	3	2	170	1	0	0	0	0	1	0	0	0	8115	1464	51	5	458	5	KCNJ11	11	17408921	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	4377780	17408921	117597595	384	139507											
GTF2H1	2965	broad.mit.edu	37	chr11	18380312	18380312	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataactcttttgcatacatcGtttcatgtaaacctcacagc	4	11	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18380312	A	A	18380312	1	1	170	0	1	0	0	0	0	0	0	0	6925	1160	40	4		4	GTF2H1	11	18380312	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	971391	18380312	116626204	385	139508											
EXT2	2132	broad.mit.edu	37	chr11	44193353	44193353	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgtcagggtgggtggaagGaaaaatgtactacaattgta	14	4	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44193353	A	A	44193353	1	1	170	0	1	0	0	0	0	0	0	0	5367	1189	41	4		4	EXT2	11	44193353	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	25813041	44193353	90813163	386	139509											
PRDM11	56981	broad.mit.edu	37	chr11	45241290	45241290	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcatgtcccaggaaaccattCaccgcaacctggccagaggt	10	14	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45241290	G	G	45241290	3	3	170	1	0	0	0	0	1	0	0	0	12558	826	29	4	848	4	PRDM11	11	45241290	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1047937	45241290	89765226	387	139510											
LRP4	4038	broad.mit.edu	37	chr11	46914542	46914542	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccctccatgggatgcaagGcaatggcccggggcttctcc	12	15	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46914542	A	A	46914542	3	1	170	1	0	0	0	0	1	0	0	0	9046	1203	42	4	4142	4	LRP4	11	46914542	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1673252	46914542	88091974	388	139511											
MYBPC3	4607	broad.mit.edu	37	chr11	47360789	47360789	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaagtgtggcacctccaTggagacctcgccaagggctc	13	14	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47360789	C	C	47360789	1	2	170	0	1	0	0	0	0	0	0	0	10107	1479	51	5		5	MYBPC3	11	47360789	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	446247	47360789	87645727	389	139512											
OR4X1	390113	broad.mit.edu	37	chr11	48285642	48285642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgttctgtcatggcccCcaagcttatctttgactcct	6	14	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48285642	A	A	48285642	3	1	170	1	0	0	0	0	1	0	0	0	11178	623	22	2	232	2	OR4X1	11	48285642	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	924853	48285642	86720874	390	139513											
OR4C3	256144	broad.mit.edu	37	chr11	48346345	48346345	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagttattattttcatctAataactgagatatgtggtgc	7	4	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48346345	C	C	48346345	1	2	170	0	1	0	0	0	0	0	0	0	11144	377	13	5		5	OR4C3	11	48346345	5'Flank	SNP	A	TCGA-50-6592-01A-11D-1753-08	60703	48346345	86660171	391	139514											
OR4C16	219428	broad.mit.edu	37	chr11	55340087	55340087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttcagatttttcttgccCtgagtttgccattctgtggc	9	9	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55340087	A	A	55340087	3	1	170	1	0	0	0	0	1	0	0	0	11143	680	24	2	486	2	OR4C16	11	55340087	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	6993742	55340087	79666429	392	139515											
OR5W2	390148	broad.mit.edu	37	chr11	55681794	55681794	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagaagggtattgacttgtTcttggcaagtagatctacca	10	6	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55681794	C	C	55681794	3	2	170	1	0	0	0	0	1	0	0	0	11279	1783	62	5	669	5	OR5W2	11	55681794	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	341707	55681794	79324722	393	139516											
OR8K3	219473	broad.mit.edu	37	chr11	56086504	56086504	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaggctttttctacctgtgGagcccacctgacagtggtca	10	11	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56086504	T	T	56086504	3	4	170	1	0	0	0	0	1	0	0	0	11338	1174	41	3	724	3	OR8K3	11	56086504	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	404710	56086504	78920012	394	139517											
ZDHHC5	25921	broad.mit.edu	37	chr11	57440692	57440692	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcccagcaggggtgtTtgggtgggtggatactccat	14	8	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57440692	G	G	57440692	1	3	170	0	1	0	0	0	0	0	0	0	17744	1856	64	5		5	ZDHHC5	11	57440692	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1354188	57440692	77565824	395	139518											
SPTBN2	6712	broad.mit.edu	37	chr11	66466354	66466354	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagtgggcgccttgggaaGaagccatgaaggggctcaca	16	8	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66466354	C	C	66466354	1	2	170	0	1	0	0	0	0	0	0	0	15238	957	33	4		4	SPTBN2	11	66466354	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	9025662	66466354	68540162	396	139519											
CPT1A	1374	broad.mit.edu	37	chr11	68548137	68548137	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggccacgatcggcgcatCtgcccaggagtgttcagcgt	15	12	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68548137	A	A	68548137	3	1	170	1	0	0	0	0	1	0	0	0	3863	913	32	3	964	3	CPT1A	11	68548137	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2081783	68548137	66458379	397	139520											
C11orf30	56946	broad.mit.edu	37	chr11	76257150	76257150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccacccacatggtggtgGcagggatggcgaattccact	12	13	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76257150	T	T	76257150	3	4	170	1	0	0	0	0	1	0	0	0	1648	1203	42	3	3657	3	C11orf30	11	76257150	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	7709013	76257150	58749366	398	139521											
GRIA4	2893	broad.mit.edu	37	chr11	105774480	105774480	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttacaaagaccccagacCatttctggcactcgataaga	6	12	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105774480	T	T	105774480	1	4	170	0	1	0	0	0	0	0	0	0	6836	609	21	4		4	GRIA4	11	105774480	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	29517330	105774480	29232036	399	139522											
DSCAML1	57453	broad.mit.edu	37	chr11	117308126	117308126	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctttgctgaaggagggctCtggcaggccggagggagaga	19	7	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117308126	T	T	117308126	5	4	170	1	0	0	0	0	0	0	1	0	4809	927	32	4	1761	4	DSCAML1	11	117308126	Splice_Site	SNP	C	TCGA-50-6592-01A-11D-1753-08	11533646	117308126	17698390	400	139523											
UBASH3B	84959	broad.mit.edu	37	chr11	122665630	122665630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaggccttgcccttgctGtctccaaagcttccacgatc	8	15	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122665630	T	T	122665630	1	4	170	0	1	0	0	0	0	0	0	0	16966	1392	48	3		3	UBASH3B	11	122665630	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	5357504	122665630	12340886	401	139524											
OR10G8	219869	broad.mit.edu	37	chr11	123901236	123901236	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagctctgttgaagctgaaaGacaaagtagcacattctcag	9	8	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123901236	T	T	123901236	3	4	170	1	0	0	0	0	1	0	0	0	10997	942	33	3	909	3	OR10G8	11	123901236	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1235606	123901236	11105280	402	139525											
ADAMTS15	170689	broad.mit.edu	37	chr11	130343039	130343039	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcggggatgacaactacCtggctctgaagaacagccaa	11	10	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130343039	T	T	130343039	2	4	170	1	0	0	0	0	0	0	0	1	260	680	24	4		4	ADAMTS15	11	130343039	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	6441803	130343039	4663477	403	139526											
CACNA1C	775	broad.mit.edu	37	chr12	2621976	2621976	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctcctctcactctcaccAgagagttttccaaagagagg	7	15	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2621976	G	G	2621976	5	3	170	1	0	0	0	0	0	0	1	0	2566	202	7	5	1358	5	CACNA1C	12	2621976	Splice_Site	SNP	A	TCGA-50-6592-01A-11D-1753-08		2621976	131229919	404	139527											
ATN1	1822	broad.mit.edu	37	chr12	7045534	7045535	+	Frame_Shift_Ins	INS	-	C	C													cttcctcttctgctccagcgINSccccccatgaggtttcctta							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7045535	C	C	7045534	7	5	170	1	0	1	1	0	0	0	0	0	1115	1074	38	0	1118	0	ATN1	12	7045534	Frame_Shift_Ins	INS	-	TCGA-50-6592-01A-11D-1753-08	4423558	7045534	126806361	405	139528											
MFAP5	8076	broad.mit.edu	37	chr12	8800681	8800681	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttcttctttcctctttttCaatgatcacagaccattggg	5	10	5	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8800681	T	T	8800681	1	4	170	0	1	0	0	0	0	0	0	0	9611	841	29	4		4	MFAP5	12	8800681	3'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	1755147	8800681	125051214	406	139529											
GRIN2B	2904	broad.mit.edu	37	chr12	13906605	13906605	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctttgaagtttcttgagcTgattctggatcttagaatct	10	6	4	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13906605	A	A	13906605	3	1	170	1	0	0	0	0	1	0	0	0	6846	1580	55	5	3842	5	GRIN2B	12	13906605	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	5105924	13906605	119945290	407	139530											
PDE3A	5139	broad.mit.edu	37	chr12	20833077	20833077	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaacggttggcaggcataGaaaatcaatccctggaccag	11	10	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20833077	A	A	20833077	3	1	170	1	0	0	0	0	1	0	0	0	11731	943	33	4	3360	4	PDE3A	12	20833077	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	6926472	20833077	113018818	408	139531											
PYROXD1	79912	broad.mit.edu	37	chr12	21598400	21598400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactgaagagtgaagaacaCgtaagataattgttttctta	8	5	1	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21598400	A	A	21598400	3	1	170	1	0	0	0	0	1	0	0	0	12974	550	19	3	295	3	PYROXD1	12	21598400	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	765323	21598400	112253495	409	139532											
PYROXD1	79912	broad.mit.edu	37	chr12	21602743	21602743	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagggaaatttttgtttcatGaccagtaaaccacagagtgg	10	6	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21602743	A	A	21602743	1	1	170	0	1	0	0	0	0	0	0	0	12974	1305	45	4		4	PYROXD1	12	21602743	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	4343	21602743	112249152	410	139533											
ABCC9	10060	broad.mit.edu	37	chr12	22048235	22048235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagctgctatgggaattgCtgcattcatgaagactgtgg	12	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22048235	A	A	22048235	3	1	170	1	0	0	0	0	1	0	0	0	59	797	28	3	3270	3	ABCC9	12	22048235	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	445492	22048235	111803660	411	139534											
ABCC9	10060	broad.mit.edu	37	chr12	22068801	22068801	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagatcctggaggtctTcaggaggctttactttctga	10	11	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22068801	A	A	22068801	3	1	170	1	0	0	0	0	1	0	0	0	59	1783	62	5	4310	5	ABCC9	12	22068801	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	20566	22068801	111783094	412	139535											
ABCC9	10060	broad.mit.edu	37	chr12	22086858	22086858	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctttggctcccccaccCtggaaaagagagaaaagtta	10	10	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22086858	A	A	22086858	5	1	170	1	0	0	0	0	0	0	1	0	59	695	24	2	4797	2	ABCC9	12	22086858	Splice_Site	SNP	C	TCGA-50-6592-01A-11D-1753-08	18057	22086858	111765037	413	139536											
CMAS	55907	broad.mit.edu	37	chr12	22215287	22215287	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactggattgcaaaatggaaGtcagtgtatcagacaagcta	10	6	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22215287	A	A	22215287	3	1	170	1	0	0	0	0	1	0	0	0	3607	1029	36	4	1059	4	CMAS	12	22215287	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	128429	22215287	111636608	414	139537											
KIAA0528	9847	broad.mit.edu	37	chr12	22623828	22623828	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttttgtcaaaagtgattgcGactgccgtgactgtaaccta	9	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22623828	C	C	22623828	2	2	170	1	0	0	0	0	0	0	0	1	8252	1045	37	4		4	KIAA0528	12	22623828	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	408541	22623828	111228067	415	139538											
TSPAN11	441631	broad.mit.edu	37	chr12	31132538	31132538	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagcacttgaaccggactcTggctgagaactacgggcagc	13	12	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31132538	A	A	31132538	3	1	170	1	0	0	0	0	1	0	0	0	16760	1580	55	5	403	5	TSPAN11	12	31132538	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	8508710	31132538	102719357	416	139539											
YARS2	51067	broad.mit.edu	37	chr12	32903846	32903846	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagttacacttatataacAtacctaatttttatctccag	3	8	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32903846	G	G	32903846	1	3	170	0	1	0	0	0	0	0	0	0	17595	232	8	5		5	YARS2	12	32903846	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	1771308	32903846	100948049	417	139540											
LRRK2	120892	broad.mit.edu	37	chr12	40653203	40653203	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatattggttctgccctcCtgtacttatttcaatttggt	6	8	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40653203	T	T	40653203	1	4	170	0	1	0	0	0	0	0	0	0	9120	696	24	4		4	LRRK2	12	40653203	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	7749357	40653203	93198692	418	139541											
CNTN1	1272	broad.mit.edu	37	chr12	41327314	41327314	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttcagttcaaggatgtatAtgcattgatgggccaaaatg	11	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41327314	G	G	41327314	3	3	170	1	0	0	0	0	1	0	0	0	3672	449	16	5	781	5	CNTN1	12	41327314	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	674111	41327314	92524581	419	139542											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777469	43777469	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actatttcattcacttgtctGatttggttatctgtgcactc	6	9	4	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43777469	C	C	43777469	3	2	170	1	0	0	0	0	1	0	0	0	266	1280	45	4	1078	4	ADAMTS20	12	43777469	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2450155	43777469	90074426	420	139543											
ADAMTS20	80070	broad.mit.edu	37	chr12	43833654	43833654	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacttaaccagtagtttacTaatataattaaatccaagtg	5	7	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43833654	A	A	43833654	1	1	170	0	1	0	0	0	0	0	0	0	266	1537	53	5		5	ADAMTS20	12	43833654	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	56185	43833654	90018241	421	139544											
ADAMTS20	80070	broad.mit.edu	37	chr12	43945065	43945065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaggaggtcagtgtcctcaCcagggcttctgcaacaacag	12	11	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43945065	A	A	43945065	3	1	170	1	0	0	0	0	1	0	0	0	266	507	18	3	5783	3	ADAMTS20	12	43945065	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	111411	43945065	89906830	422	139545											
ARID2	196528	broad.mit.edu	37	chr12	46285565	46285565	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttttattttttataggtGgtttcagacaccctcacagg	7	8	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46285565	T	T	46285565	3	4	170	1	0	0	0	0	1	0	0	0	917	1357	47	2	4991	2	ARID2	12	46285565	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2340500	46285565	87566330	423	139546											
TIMELESS	8914	broad.mit.edu	37	chr12	56824676	56824676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatactcacgttgtgaaggcCtttgtgaaagatgaggtccc	11	8	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56824676	A	A	56824676	3	1	170	1	0	0	0	0	1	0	0	0	16027	681	24	2	2812	2	TIMELESS	12	56824676	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	10539111	56824676	77027219	424	139547											
HELB	92797	broad.mit.edu	37	chr12	66725408	66725408	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgtgaatgatgatgaaagtCcaagcaaaatttttatggta	10	3	0	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66725408	G	G	66725408	3	3	170	1	0	0	0	0	1	0	0	0	7112	855	30	4	3191	4	HELB	12	66725408	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	9900732	66725408	67126487	425	139548											
NUP107	57122	broad.mit.edu	37	chr12	69135550	69135550	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttttgtaaggatctTtagcttaaattgttaaaatg	6	3	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69135550	G	G	69135550	1	3	170	0	1	0	0	0	0	0	0	0	10848	1856	64	5		5	NUP107	12	69135550	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	2410142	69135550	64716345	426	139549											
TRHDE	29953	broad.mit.edu	37	chr12	73012716	73012716	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctggagattatcagataCctgtctgaggagaaggattt	11	7	3	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73012716	A	A	73012716	4	1	170	1	0	0	0	0	0	1	0	0	16603	518	18	3	2282	3	TRHDE	12	73012716	Nonsense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3877166	73012716	60839179	427	139550											
TRHDE	29953	broad.mit.edu	37	chr12	73056972	73056972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggaaaagctctaagacaCtaatatatgtatcttataaa	5	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73056972	A	A	73056972	3	1	170	1	0	0	0	0	1	0	0	0	16603	564	20	3	3146	3	TRHDE	12	73056972	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	44256	73056972	60794923	428	139551											
MYF6	4618	broad.mit.edu	37	chr12	81101699	81101699	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtcctggcgcccccgggCctgcagcctccacactgccc	10	21	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81101699	A	A	81101699	2	1	170	1	0	0	0	0	0	0	0	1	10122	726	26	3		3	MYF6	12	81101699	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	8044727	81101699	52750196	429	139552											
EEA1	8411	broad.mit.edu	37	chr12	93244827	93244827	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcaaatcctggcttcactCaatagtatacactacacaag	4	12	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93244827	G	G	93244827	1	3	170	0	1	0	0	0	0	0	0	0	4961	841	29	4		4	EEA1	12	93244827	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	12143128	93244827	40607068	430	139553											
ANKS1B	56899	broad.mit.edu	37	chr12	99223145	99223145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttcctgaatggaaataCatcatgaaataaataccatg	8	6	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99223145	A	A	99223145	1	1	170	0	1	0	0	0	0	0	0	0	689	493	17	3		3	ANKS1B	12	99223145	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	5978318	99223145	34628750	431	139554											
SLC5A8	160728	broad.mit.edu	37	chr12	101588818	101588818	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatacaacaactggaatttTcaattttgcaaagcaagtgg	8	6	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101588818	C	C	101588818	1	2	170	0	1	0	0	0	0	0	0	0	14785	1798	62	5		5	SLC5A8	12	101588818	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	2365673	101588818	32263077	432	139555											
MYBPC1	4604	broad.mit.edu	37	chr12	102053373	102053373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctatagtctgctgaattGctcaatttataggagactct	7	8	4	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102053373	T	T	102053373	1	4	170	0	1	0	0	0	0	0	0	0	10105	1334	46	3		3	MYBPC1	12	102053373	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	464555	102053373	31798522	433	139556											
STAB2	55576	broad.mit.edu	37	chr12	104106245	104106245	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgaaggaaggaatttgctGggggggctggcaaggcttgc	19	6	0	0	rs78000735		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104106245	C	C	104106245	1	2	170	0	1	0	0	0	0	0	0	0	15356	1363	47	4		4	STAB2	12	104106245	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2052872	104106245	29745650	434	139557											
C12orf45	121053	broad.mit.edu	37	chr12	105385645	105385645	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtaactatgctttgttttCatatggtgaaattactggtc	9	5	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105385645	T	T	105385645	1	4	170	0	1	0	0	0	0	0	0	0	1704	841	29	4		4	C12orf45	12	105385645	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1279400	105385645	28466250	435	139558											
UNG	7374	broad.mit.edu	37	chr12	109536251	109536251	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcaggccatcccagccaaGaaggccccggctgggcagga	14	14	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109536251	C	C	109536251	3	2	170	1	0	0	0	0	1	0	0	0	17125	933	33	4	258	4	UNG	12	109536251	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	4150606	109536251	24315644	436	139559											
MED13L	23389	broad.mit.edu	37	chr12	116453021	116453021	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttggactgtgcatcgttatCatccctccatcttgggaaac	8	11	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116453021	G	G	116453021	3	3	170	1	0	0	0	0	1	0	0	0	9524	826	29	4	5660	4	MED13L	12	116453021	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	6916770	116453021	17398874	437	139560											
VSIG10	54621	broad.mit.edu	37	chr12	118506200	118506200	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttgaagatcctggaatcCatttcccatctgttctatgt	6	11	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118506200	T	T	118506200	3	4	170	1	0	0	0	0	1	0	0	0	17350	603	21	4	81	4	VSIG10	12	118506200	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2053179	118506200	15345695	438	139561											
MMP17	4326	broad.mit.edu	37	chr12	132334445	132334445	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcggcatcgacgctgccTtctcctgggcccacaatgac	11	16	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132334445	G	G	132334445	3	3	170	1	0	0	0	0	1	0	0	0	9749	1609	56	5	1337	5	MMP17	12	132334445	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	13828245	132334445	1517450	439	139562											
POLE	5426	broad.mit.edu	37	chr12	133219533	133219533	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttctccaggaggaggccgTgctctgctgagtacagggcg	15	12	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133219533	G	G	133219533	3	3	170	1	0	0	0	0	1	0	0	0	12291	1696	59	5	2315	5	POLE	12	133219533	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	885088	133219533	632362	440	139563											
KATNAL1	84056	broad.mit.edu	37	chr13	30814603	30814603	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataaattctcaccttccaTggccttctaatccctttgaa	3	12	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30814603	C	C	30814603	2	2	170	1	0	0	0	0	0	0	0	1	8055	1451	51	5		5	KATNAL1	13	30814603	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08		30814603	84355275	441	139564											
KATNAL1	84056	broad.mit.edu	37	chr13	30829462	30829462	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agactacttaggctttgaatGagacttttttctaactcttc	6	8	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30829462	C	C	30829462	1	2	170	0	1	0	0	0	0	0	0	0	8055	1305	45	4		4	KATNAL1	13	30829462	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	14859	30829462	84340416	442	139565											
FRY	10129	broad.mit.edu	37	chr13	32731405	32731405	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataactataatgcatgtttTtcaggcatgtccttatatta	5	6	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32731405	C	C	32731405	1	2	170	0	1	0	0	0	0	0	0	0	6123	1856	64	5		5	FRY	13	32731405	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1901943	32731405	82438473	443	139566											
FRY	10129	broad.mit.edu	37	chr13	32759380	32759380	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttaaccctactggccttTatgcaggtctgggatggtga	11	9	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32759380	C	C	32759380	1	2	170	0	1	0	0	0	0	0	0	0	6123	1769	61	5		5	FRY	13	32759380	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	27975	32759380	82410498	444	139567											
DGKH	160851	broad.mit.edu	37	chr13	42780201	42780201	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcagtatattcctcttccCagcttgcaaggcatagccgt	10	12	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42780201	T	T	42780201	2	4	170	1	0	0	0	0	0	0	0	1	4510	581	21	4		4	DGKH	13	42780201	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	10020821	42780201	72389677	445	139568											
TSC22D1	8848	broad.mit.edu	37	chr13	45149716	45149716	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagctgcgttcgggctccccTaagtcagtagccctggaaag	13	12	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45149716	A	A	45149716	3	1	170	1	0	0	0	0	1	0	0	0	16732	1519	53	5	2867	5	TSC22D1	13	45149716	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	2369515	45149716	70020162	446	139569											
HTR2A	3356	broad.mit.edu	37	chr13	47469796	47469796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagttagaataatcactacGgctgtcagtaaagcagacca	8	8	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47469796	T	T	47469796	2	4	170	1	0	0	0	0	0	0	0	1	7511	1103	39	1		1	HTR2A	13	47469796	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	2320080	47469796	67700082	447	139570											
KPNA3	3839	broad.mit.edu	37	chr13	50307098	50307098	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatggtaacttactgcttTaaaatcagcatcaacatctg	5	9	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50307098	C	C	50307098	3	2	170	1	0	0	0	0	1	0	0	0	8502	1763	61	5	1426	5	KPNA3	13	50307098	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	2837302	50307098	64862780	448	139571											
KLHL1	57626	broad.mit.edu	37	chr13	70281786	70281786	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcattagtttgtgggtcatAggattccatagtgttgaggt	12	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70281786	T	T	70281786	3	4	170	1	0	0	0	0	1	0	0	0	8436	420	15	5	96	5	KLHL1	13	70281786	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	19974688	70281786	44888092	449	139572											
LMO7	4008	broad.mit.edu	37	chr13	76379464	76379464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagatgctgttataataaCtttgtcctaggagctgtggt	11	5	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76379464	A	A	76379464	1	1	170	0	1	0	0	0	0	0	0	0	8929	580	20	3		3	LMO7	13	76379464	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	6097678	76379464	38790414	450	139573											
SLITRK1	114798	broad.mit.edu	37	chr13	84454937	84454937	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgcagaccactcggccgaTcagggcattcttgggaatgt	12	11	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84454937	C	C	84454937	3	2	170	1	0	0	0	0	1	0	0	0	14856	1435	50	5	1388	5	SLITRK1	13	84454937	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	8075473	84454937	30714941	451	139574											
NALCN	259232	broad.mit.edu	37	chr13	102029295	102029295	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttgtaattctggtccttGgcagttcaaatcggaaataa	8	6	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102029295	A	A	102029295	3	1	170	1	0	0	0	0	1	0	0	0	10242	1348	47	4	4888	4	NALCN	13	102029295	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	17574358	102029295	13140583	452	139575											
CDC16	8881	broad.mit.edu	37	chr13	115037862	115037862	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaagaaacctttgaaattGaaatgaatgaaagtgacatg	10	3	0	6			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115037862	A	A	115037862	3	1	170	1	0	0	0	0	1	0	0	0	3088	1291	45	4	1877	4	CDC16	13	115037862	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	13008567	115037862	132016	453	139576											
OR4K1	79544	broad.mit.edu	37	chr14	20404199	20404200	+	Missense_Mutation	DNP	CC	AT	AT													ggcatatgacagatttatagCcatatgtaagcctctgcact							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	20404200	AT	AT	20404199	3	1	170	1	0	0	0	0	1	0	0	0	11161	739	26	3	376	3	OR4K1	14	20404199	Missense_Mutation	DNP	CC	TCGA-50-6592-01A-11D-1753-08		20404199	86945341	454	139577											
OR4K15	81127	broad.mit.edu	37	chr14	20444178	20444178	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccgtcgtgtatgtgttgtGctcgtcctcatttcatggtt	11	9	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20444178	C	C	20444178	2	2	170	1	0	0	0	0	0	0	0	1	11164	1306	46	4		4	OR4K15	14	20444178	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	39979	20444178	86905362	455	139578											
TTC5	91875	broad.mit.edu	37	chr14	20757805	20757805	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcattcacactgtggtcgcGatgccactgtggcaacagcc	11	13	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20757805	T	T	20757805	4	4	170	1	0	0	0	0	0	1	0	0	16837	1059	37	3	22	3	TTC5	14	20757805	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	313627	20757805	86591735	456	139579											
CPNE6	9362	broad.mit.edu	37	chr14	24543221	24543221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgtggccaaggcagatggGgatgtcacagctgggtctcc	15	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24543221	T	T	24543221	1	4	170	0	1	0	0	0	0	0	0	0	3848	1247	43	2		2	CPNE6	14	24543221	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3785416	24543221	82806319	457	139580											
SDCCAG1	9147	broad.mit.edu	37	chr14	50053098	50053098	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcaacgaggtaaaaggaaGaagctggcccacgcatgcgc	14	10	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50053098	A	A	50053098	1	1	170	0	1	0	0	0	0	0	0	0	14070	957	33	4		4	SDCCAG1	14	50053098	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	25509877	50053098	57296442	458	139581											
POLE2	5427	broad.mit.edu	37	chr14	50140867	50140867	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaaatggtatatcgctcacGaaacatctctgctttatctc	5	11	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50140867	A	A	50140867	3	1	170	1	0	0	0	0	1	0	0	0	12292	1058	37	4	1252	4	POLE2	14	50140867	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	87769	50140867	57208673	459	139582											
NIN	51199	broad.mit.edu	37	chr14	51259545	51259545	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaactcgggcaaggaccttCgtccgtaacgcttcccacct	10	15	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51259545	T	T	51259545	3	4	170	1	0	0	0	0	1	0	0	0	10512	884	31	4	6337	4	NIN	14	51259545	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1118678	51259545	56089995	460	139583											
SYNE2	23224	broad.mit.edu	37	chr14	64610661	64610661	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtacatggaatgctgaatAgaaaggtgtgttcctgcgtc	13	6	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64610661	G	G	64610661	3	3	170	1	0	0	0	0	1	0	0	0	15565	412	15	5	15804	5	SYNE2	14	64610661	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	13351116	64610661	42738879	461	139584											
TMEM63C	57156	broad.mit.edu	37	chr14	77705862	77705862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcggggccttttgggGcccggggtgggggtaaaagg	21	8	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77705862	T	T	77705862	1	4	170	0	1	0	0	0	0	0	0	0	16315	1218	42	3		3	TMEM63C	14	77705862	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	13095201	77705862	29643678	462	139585											
VIPAR	63894	broad.mit.edu	37	chr14	77919630	77919630	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctatccctgcctagggacTcttctacttacttcccacag	5	15	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77919630	A	A	77919630	1	1	170	0	1	0	0	0	0	0	0	0	17295	1566	54	5		5	VIPAR	14	77919630	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	213768	77919630	29429910	463	139586											
NRXN3	9369	broad.mit.edu	37	chr14	80163886	80163886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaattgctcaaggaagcctGttatgatgcctggtccattc	9	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80163886	T	T	80163886	1	4	170	0	1	0	0	0	0	0	0	0	10762	1392	48	3		3	NRXN3	14	80163886	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2244256	80163886	27185654	464	139587											
ATG2B	55102	broad.mit.edu	37	chr14	96796068	96796068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatcaataattaatactcCtaaggaaattaaccagaaag	5	6	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96796068	A	A	96796068	1	1	170	0	1	0	0	0	0	0	0	0	1098	696	24	2		2	ATG2B	14	96796068	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	16632182	96796068	10553472	465	139588											
MAGEL2	54551	broad.mit.edu	37	chr15	23890089	23890089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggggtgtttgggtgctccCagtcacccgagacctggata	16	10	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23890089	A	A	23890089	3	1	170	1	0	0	0	0	1	0	0	0	9281	595	21	2	952	2	MAGEL2	15	23890089	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08		23890089	78641303	466	139589											
HERC2	8924	broad.mit.edu	37	chr15	28361721	28361721	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagcagatattcaagatatCtactgtcactcctcaaacag	5	10	4	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28361721	G	G	28361721	1	3	170	0	1	0	0	0	0	0	0	0	7125	928	32	4		4	HERC2	15	28361721	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4471632	28361721	74169671	467	139590											
RYR3	6263	broad.mit.edu	37	chr15	34030761	34030761	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacctaacggagaagcttttCtgggggatttttgactcgct	11	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34030761	T	T	34030761	2	4	170	1	0	0	0	0	0	0	0	1	13881	912	32	4		4	RYR3	15	34030761	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	5669040	34030761	68500631	468	139591											
MGA	23269	broad.mit.edu	37	chr15	42049867	42049867	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtaaataatgtggccatAtatcacaccttgggaaaaag	8	7	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42049867	G	G	42049867	1	3	170	0	1	0	0	0	0	0	0	0	9633	464	16	5		5	MGA	15	42049867	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	8019106	42049867	60481525	469	139592											
SORD	6652	broad.mit.edu	37	chr15	45345184	45345184	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaaaagacagaaggtgctGagatagaacagcagttggct	12	6	0	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45345184	T	T	45345184	1	4	170	0	1	0	0	0	0	0	0	0	15047	1305	45	3		3	SORD	15	45345184	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3295317	45345184	57186208	470	139593											
C15orf48	84419	broad.mit.edu	37	chr15	45723071	45723071	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaatcttgactaaagttttCatttttaaagatgaaaagat	5	3	2	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45723071	A	A	45723071	1	1	170	0	1	0	0	0	0	0	0	0	1812	841	29	3		3	C15orf48	15	45723071	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	377887	45723071	56808321	471	139594											
MYO5C	55930	broad.mit.edu	37	chr15	52521134	52521134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaagttagaaagttgaCttttaaaatatggaatacaa	6	3	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52521134	A	A	52521134	1	1	170	0	1	0	0	0	0	0	0	0	10174	580	20	3		3	MYO5C	15	52521134	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	6798063	52521134	50010258	472	139595											
WDR72	256764	broad.mit.edu	37	chr15	53907714	53907714	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataaactatagtatctgactCtcgcaaagaatcacaattat	4	8	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53907714	G	G	53907714	3	3	170	1	0	0	0	0	1	0	0	0	17449	922	32	4	643	4	WDR72	15	53907714	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1386580	53907714	48623678	473	139596											
GLCE	26035	broad.mit.edu	37	chr15	69561478	69561478	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactatcataccacccacatCaatcagttgcagctactcag	5	14	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69561478	G	G	69561478	3	3	170	1	0	0	0	0	1	0	0	0	6496	816	29	4	1759	4	GLCE	15	69561478	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	15653764	69561478	32969914	474	139597											
LARP6	55323	broad.mit.edu	37	chr15	71128813	71128813	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgctccaggtcctcacGctcgttctcacctccacttg	6	19	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71128813	A	A	71128813	3	1	170	1	0	0	0	0	1	0	0	0	8704	1087	38	4	1251	4	LARP6	15	71128813	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1567335	71128813	31402579	475	139598											
ISLR2	57611	broad.mit.edu	37	chr15	74426491	74426491	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtggcaacggggacccctctCggtacgtttctaaccacgcg	12	14	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74426491	G	G	74426491	3	3	170	1	0	0	0	0	1	0	0	0	7929	875	31	4	1398	4	ISLR2	15	74426491	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3297678	74426491	28104901	476	139599											
CYP11A1	1583	broad.mit.edu	37	chr15	74631499	74631499	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggccccaccagggccccagTgccaccctctgtctgcaatt	10	18	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74631499	C	C	74631499	1	2	170	0	1	0	0	0	0	0	0	0	4177	1711	59	5		5	CYP11A1	15	74631499	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	205008	74631499	27899893	477	139600											
CPEB1	64506	broad.mit.edu	37	chr15	83240093	83240093	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactcattctctggcactcaCccgagtgtgtgctgctctgg	10	13	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83240093	T	T	83240093	5	4	170	1	0	0	0	0	0	0	1	0	3832	521	18	4	1360	4	CPEB1	15	83240093	Splice_Site	SNP	C	TCGA-50-6592-01A-11D-1753-08	8608594	83240093	19291299	478	139601											
SEMA4B	10509	broad.mit.edu	37	chr15	90771740	90771740	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccagtccctgtcagacagCcccccggggtcccgagtctt	10	17	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90771740	T	T	90771740	2	4	170	1	0	0	0	0	0	0	0	1	14145	738	26	4		4	SEMA4B	15	90771740	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	7531647	90771740	11759652	479	139602											
MCTP2	55784	broad.mit.edu	37	chr15	94983273	94983273	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcattgtgtgtgtgcgtaCctgtttggaaatgtttctga	12	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94983273	G	G	94983273	1	3	170	0	1	0	0	0	0	0	0	0	9494	522	18	4		4	MCTP2	15	94983273	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4211533	94983273	7548119	480	139603											
PDIA2	64714	broad.mit.edu	37	chr16	335705	335705	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcaacggccaagtcaaggTccgctgcagactgctcataa	9	14	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	335705	A	A	335705	5	1	170	1	0	0	0	0	0	0	1	0	11762	1681	58	5	1147	5	PDIA2	16	335705	Splice_Site	SNP	T	TCGA-50-6592-01A-11D-1753-08		335705	90019048	481	139604											
MSLNL	401827	broad.mit.edu	37	chr16	831143	831143	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtgcgcatgtccacctgTgttgcacatgtgtgagatgg	14	9	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	831143	C	C	831143	1	2	170	0	1	0	0	0	0	0	0	0	9976	1711	59	5		5	MSLNL	16	831143	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	495438	831143	89523610	482	139605											
TSC2	7249	broad.mit.edu	37	chr16	2104434	2104434	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatcacctacttggaggaAgagctgggtgggtgccacct	13	11	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2104434	G	G	2104434	2	3	170	1	0	0	0	0	0	0	0	1	16731	69	3	5		5	TSC2	16	2104434	Silent	SNP	A	TCGA-50-6592-01A-11D-1753-08	1273291	2104434	88250319	483	139606											
RNPS1	10921	broad.mit.edu	37	chr16	2313105	2313105	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcactcacttggagcgGgagcgcctcctgttgtcgtg	15	12	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2313105	A	A	2313105	2	1	170	1	0	0	0	0	0	0	0	1	13622	1219	43	4		4	RNPS1	16	2313105	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	208671	2313105	88041648	484	139607											
CREBBP	1387	broad.mit.edu	37	chr16	3820748	3820748	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggcactgagccaggagtCggggtgggagtctgcccgga	19	10	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3820748	A	A	3820748	2	1	170	1	0	0	0	0	0	0	0	1	3893	871	31	3		3	CREBBP	16	3820748	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	1507643	3820748	86534005	485	139608											
MYH11	4629	broad.mit.edu	37	chr16	15810937	15810937	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggttccctgacttcactAtgactcctgctgtccatcac	7	14	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15810937	G	G	15810937	1	3	170	0	1	0	0	0	0	0	0	0	10125	464	16	5		5	MYH11	16	15810937	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	11990189	15810937	74543816	486	139609											
ABCC6	368	broad.mit.edu	37	chr16	16272552	16272552	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatacaaagaggaaattggaCtcaagtggaagggggaggtg	16	3	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16272552	G	G	16272552	1	3	170	0	1	0	0	0	0	0	0	0	57	580	20	4		4	ABCC6	16	16272552	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	461615	16272552	74082201	487	139610											
ACSM2B	348158	broad.mit.edu	37	chr16	20559639	20559639	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgcgagagattcagaTagataggcatgaatgtatgt	13	4	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20559639	A	A	20559639	1	1	170	0	1	0	0	0	0	0	0	0	184	1421	49	5		5	ACSM2B	16	20559639	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	4287087	20559639	69795114	488	139611											
DNAH3	55567	broad.mit.edu	37	chr16	21062956	21062956	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcccctggagttctccGttcacccctcagatctagga	7	15	5	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21062956	A	A	21062956	1	1	170	0	1	0	0	0	0	0	0	0	4643	1160	40	4		4	DNAH3	16	21062956	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	503317	21062956	69291797	489	139612											
CRYM	1428	broad.mit.edu	37	chr16	21279135	21279135	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgagcccagggatgcggaGggaaagttgaactactctgg	15	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21279135	A	A	21279135	1	1	170	0	1	0	0	0	0	0	0	0	3953	1015	35	4		4	CRYM	16	21279135	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	216179	21279135	69075618	490	139613											
CHP2	63928	broad.mit.edu	37	chr16	23767251	23767251	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcttcttccccgatgggtGaggcttgctgggcgtgggga	17	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23767251	A	A	23767251	1	1	170	0	1	0	0	0	0	0	0	0	3398	1305	45	4		4	CHP2	16	23767251	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2488116	23767251	66587502	491	139614											
ITGAD	3681	broad.mit.edu	37	chr16	31414913	31414913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagagcctggtggatccCatcgtccaactgaaaggcct	11	13	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31414913	A	A	31414913	2	1	170	1	0	0	0	0	0	0	0	1	7954	581	21	2		2	ITGAD	16	31414913	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	7647662	31414913	58939840	492	139615											
N4BP1	9683	broad.mit.edu	37	chr16	48634330	48634330	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaataccagtgagagctatgGaataaaactactgaagcaat	8	6	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48634330	A	A	48634330	1	1	170	0	1	0	0	0	0	0	0	0	10203	1189	41	4		4	N4BP1	16	48634330	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	17219417	48634330	41720423	493	139616											
NUP93	9688	broad.mit.edu	37	chr16	56868624	56868624	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctttgtccaataatttgaGtaaacttttttccttccaca	3	9	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56868624	A	A	56868624	1	1	170	0	1	0	0	0	0	0	0	0	10867	1044	36	4		4	NUP93	16	56868624	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	8234294	56868624	33486129	494	139617											
CDH5	1003	broad.mit.edu	37	chr16	66434680	66434680	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggtgtttccagataacaCggccaacatcacagtcaagt	8	11	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66434680	T	T	66434680	3	4	170	1	0	0	0	0	1	0	0	0	3143	536	19	4	1636	4	CDH5	16	66434680	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	9566056	66434680	23920073	495	139618											
TRADD	8717	broad.mit.edu	37	chr16	67189226	67189227	+	Intron	DNP	GG	AC	AC													atggaacgtgccgtcacgggGgacttaaccgcggatccccg							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	67189227	AC	AC	67189226	1	1	170	0	1	0	0	0	0	0	0	0	16560	1247	43	4		4	TRADD	16	67189226	Intron	DNP	GG	TCGA-50-6592-01A-11D-1753-08	754546	67189226	23165527	496	139619											
SNTB2	6645	broad.mit.edu	37	chr16	69303946	69303946	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagtccatcaggttgggaaAacaaaatggagacccattgt	10	7	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69303946	T	T	69303946	1	4	170	0	1	0	0	0	0	0	0	0	14987	29	1	5		5	SNTB2	16	69303946	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	2114720	69303946	21050807	497	139620											
TAT	6898	broad.mit.edu	37	chr16	71610280	71610280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtccagaattgaggggagGttgcctttgctgctcatctg	13	9	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71610280	T	T	71610280	3	4	170	1	0	0	0	0	1	0	0	0	15709	1252	44	3	1369	3	TAT	16	71610280	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2306334	71610280	18744473	498	139621											
ZFP1	162239	broad.mit.edu	37	chr16	75204195	75204195	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagcaggaagtcccgactcaGtgtccatcagagagttcaca	10	11	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75204195	C	C	75204195	3	2	170	1	0	0	0	0	1	0	0	0	17762	1029	36	4	1197	4	ZFP1	16	75204195	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	3593915	75204195	15150558	499	139622											
NECAB2	54550	broad.mit.edu	37	chr16	84035950	84035950	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcacggtgggacgggactGacagcctcccagaggcccgt	16	13	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84035950	A	A	84035950	2	1	170	1	0	0	0	0	0	0	0	1	10400	1285	45	4		4	NECAB2	16	84035950	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	8831755	84035950	6318803	500	139623											
CDH15	1013	broad.mit.edu	37	chr16	89245841	89245841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagcctctgcctgtctttGggggttcctggatggaggag	16	9	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89245841	T	T	89245841	3	4	170	1	0	0	0	0	1	0	0	0	3130	1339	47	2	66	2	CDH15	16	89245841	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	5209891	89245841	1108912	501	139624											
CDK10	8558	broad.mit.edu	37	chr16	89760648	89760648	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatcgacatgtggtgaggaGatacggttaccgctcctggg	15	9	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89760648	C	C	89760648	1	2	170	0	1	0	0	0	0	0	0	0	3155	957	33	4		4	CDK10	16	89760648	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	514807	89760648	594105	502	139625											
TRPV3	162514	broad.mit.edu	37	chr17	3431387	3431387	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggagctgcagccaccccaTcttgtgcgtcagggccaagg	13	13	2	0	rs114131791	byFrequency;by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3431387	C	C	3431387	3	2	170	1	0	0	0	0	1	0	0	0	16722	1435	50	5	969	5	TRPV3	17	3431387	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08		3431387	77763823	503	139626											
ZZEF1	23140	broad.mit.edu	37	chr17	3912869	3912869	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaacgcacatggaggcaccGggctccctgcccagacctca	10	17	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3912869	A	A	3912869	1	1	170	0	1	0	0	0	0	0	0	0	18384	1131	39	4		4	ZZEF1	17	3912869	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	481482	3912869	77282341	504	139627											
ZZEF1	23140	broad.mit.edu	37	chr17	3969896	3969896	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaagcaaggacagccatgGcaaactacttcaaaagcaca	10	10	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3969896	A	A	3969896	1	1	170	0	1	0	0	0	0	0	0	0	18384	1218	42	4		4	ZZEF1	17	3969896	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	57027	3969896	77225314	505	139628											
ALOX15	246	broad.mit.edu	37	chr17	4535475	4535475	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccatctctggtaagtaCctggcccaggtgcacagagg	12	13	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4535475	A	A	4535475	5	1	170	1	0	0	0	0	0	0	1	0	538	521	18	3	358	3	ALOX15	17	4535475	Splice_Site	SNP	C	TCGA-50-6592-01A-11D-1753-08	565579	4535475	76659735	506	139629											
TP53	7157	broad.mit.edu	37	chr17	7577536	7577536	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgatggtgaggatgggccTccggttcatgccgcccatgc	15	11	1	2	rs67185453		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7577536	C	C	7577536	3	2	170	1	0	0	0	0	1	0	0	0	16505	1550	54	5	545	5	TP53	17	7577536	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	3042061	7577536	73617674	507	139630											
CNTROB	116840	broad.mit.edu	37	chr17	7843311	7843311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaatgggaggagctgGgggaagcttggattttaggg	17	3	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7843311	T	T	7843311	1	4	170	0	1	0	0	0	0	0	0	0	3683	1247	43	2		2	CNTROB	17	7843311	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	265775	7843311	73351899	508	139631											
MYH13	8735	broad.mit.edu	37	chr17	10204768	10204768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgctcttacctggtcccCacatctcaggtacctgccct	6	18	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10204768	A	A	10204768	1	1	170	0	1	0	0	0	0	0	0	0	10126	609	21	2		2	MYH13	17	10204768	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	2361457	10204768	70990442	509	139632											
MYH4	4622	broad.mit.edu	37	chr17	10360813	10360813	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctggtacagccccaccacAgtctcattcagggggtcctt	9	14	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10360813	T	T	10360813	2	4	170	1	0	0	0	0	0	0	0	1	10131	175	7	5		5	MYH4	17	10360813	Silent	SNP	A	TCGA-50-6592-01A-11D-1753-08	156045	10360813	70834397	510	139633											
MYH2	4620	broad.mit.edu	37	chr17	10448685	10448685	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcatgaactgataggcGttgtcagagatggagaagat	14	5	2	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10448685	A	A	10448685	2	1	170	1	0	0	0	0	0	0	0	1	10129	1136	40	4		4	MYH2	17	10448685	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	87872	10448685	70746525	511	139634											
MAP2K4	6416	broad.mit.edu	37	chr17	12032561	12032561	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcagctgagtaattctgagGaaagggaattctccccgagt	12	9	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12032561	T	T	12032561	4	4	170	1	0	0	0	0	0	1	0	0	9331	1175	41	3	1031	3	MAP2K4	17	12032561	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1583876	12032561	69162649	512	139635											
MYO15A	51168	broad.mit.edu	37	chr17	18040988	18040988	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaagatcgtcttccaggagGagcaggtgtgtgggccccat	14	10	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18040988	A	A	18040988	3	1	170	1	0	0	0	0	1	0	0	0	10157	1175	41	4	4924	4	MYO15A	17	18040988	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	6008427	18040988	63154222	513	139636											
USP22	23326	broad.mit.edu	37	chr17	20911076	20911076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcggtgttcttcctgcttGctgcaattataaaaaatgta	7	9	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20911076	T	T	20911076	1	4	170	0	1	0	0	0	0	0	0	0	17180	1334	46	3		3	USP22	17	20911076	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2870088	20911076	60284134	514	139637											
TAF15	8148	broad.mit.edu	37	chr17	34171066	34171066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgatttttctcccctgGccccatccccctaggccgtg	8	18	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34171066	T	T	34171066	1	4	170	0	1	0	0	0	0	0	0	0	15637	1218	42	3		3	TAF15	17	34171066	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	13259990	34171066	47024144	515	139638											
NMT1	4836	broad.mit.edu	37	chr17	43174708	43174708	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaatgtgccccatgaaaGgaagagggaaggtctcagga	14	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43174708	T	T	43174708	1	4	170	0	1	0	0	0	0	0	0	0	10598	1015	35	2		2	NMT1	17	43174708	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	9003642	43174708	38020502	516	139639											
IMP5	162540	broad.mit.edu	37	chr17	43923137	43923137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggatctttggcctgggtGctggcattggcctctacagc	14	10	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43923137	T	T	43923137	3	4	170	1	0	0	0	0	1	0	0	0	7791	1319	46	3	867	3	IMP5	17	43923137	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	748429	43923137	37272073	517	139640											
GOSR2	9570	broad.mit.edu	37	chr17	45009463	45009464	+	Missense_Mutation	DNP	GC	TT	TT													cagttaaagtatgatgtccaGcacctgcagactgcgctcag							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	45009464	TT	TT	45009463	3	4	170	1	0	0	0	0	1	0	0	0	6642	962	34	3	248	3	GOSR2	17	45009463	Missense_Mutation	DNP	GC	TCGA-50-6592-01A-11D-1753-08	1086326	45009463	36185747	518	139641											
COPZ2	51226	broad.mit.edu	37	chr17	46114330	46114330	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttccgtttggcccctgactCgaggtggacaccctgtgtct	12	13	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46114330	G	G	46114330	1	3	170	0	1	0	0	0	0	0	0	0	3774	899	31	4		4	COPZ2	17	46114330	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1104867	46114330	35080880	519	139642											
TUBD1	51174	broad.mit.edu	37	chr17	57952108	57952108	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatttttttttattctacAttgttgccaatagtctatat	3	6	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57952108	G	G	57952108	1	3	170	0	1	0	0	0	0	0	0	0	16888	232	8	5		5	TUBD1	17	57952108	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	11837778	57952108	23243102	520	139643											
TBX4	9496	broad.mit.edu	37	chr17	59560402	59560402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactgcagtgaggtgacccCcagagaagcatgtatgtact	11	10	0	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59560402	A	A	59560402	3	1	170	1	0	0	0	0	1	0	0	0	15782	623	22	2	1193	2	TBX4	17	59560402	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1608294	59560402	21634808	521	139644											
DCAF7	10238	broad.mit.edu	37	chr17	61655948	61655948	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acacaaaaggcgtctatccaGacctactggcaacaagcggt	9	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61655948	T	T	61655948	3	4	170	1	0	0	0	0	1	0	0	0	4308	942	33	3	262	3	DCAF7	17	61655948	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2095546	61655948	19539262	522	139645											
BPTF	2186	broad.mit.edu	37	chr17	65924679	65924679	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagaactttcatcaaaCctttgctacatgggttaagc	6	9	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65924679	T	T	65924679	3	4	170	1	0	0	0	0	1	0	0	0	1504	507	18	4	6408	4	BPTF	17	65924679	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	4268731	65924679	15270531	523	139646											
ABCA8	10351	broad.mit.edu	37	chr17	66902272	66902272	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accataattctcaattcctaGgtcaggatagctatcaagat	6	9	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66902272	C	C	66902272	3	2	170	1	0	0	0	0	1	0	0	0	38	991	35	4	2642	4	ABCA8	17	66902272	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	977593	66902272	14292938	524	139647											
MFSD11	79157	broad.mit.edu	37	chr17	74774475	74774475	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtatgacctcagaaacacAgctggacacagagcttggtg	11	10	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74774475	T	T	74774475	1	4	170	0	1	0	0	0	0	0	0	0	9622	203	7	5		5	MFSD11	17	74774475	3'UTR	SNP	A	TCGA-50-6592-01A-11D-1753-08	7872203	74774475	6420735	525	139648											
RNF213	57674	broad.mit.edu	37	chr17	78318726	78318726	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcaccccggaggaatgCctccagcatttcctgtttca	10	13	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78318726	G	G	78318726	3	3	170	1	0	0	0	0	1	0	0	0	13588	747	26	4	7020	4	RNF213	17	78318726	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	3544251	78318726	2876484	526	139649											
EMILIN2	84034	broad.mit.edu	37	chr18	2891556	2891556	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgaggaaacccttcggggCgccattaatggagaggtggg	16	7	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2891556	T	T	2891556	2	4	170	1	0	0	0	0	0	0	0	1	5136	755	27	4		4	EMILIN2	18	2891556	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08		2891556	75185692	527	139650											
EMILIN2	84034	broad.mit.edu	37	chr18	2892120	2892120	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccagcaccccgtggctcaTtgctgcagtcagctggagga	12	15	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2892120	C	C	2892120	2	2	170	1	0	0	0	0	0	0	0	1	5136	1490	52	5		5	EMILIN2	18	2892120	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08	564	2892120	75185128	528	139651											
LAMA1	284217	broad.mit.edu	37	chr18	6999564	6999564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcaccgtggacagagcCgtgcgggttgcagtcacact	13	12	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6999564	A	A	6999564	3	1	170	1	0	0	0	0	1	0	0	0	8677	652	23	1	4812	1	LAMA1	18	6999564	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	4107444	6999564	71077684	529	139652											
KIAA0802	23255	broad.mit.edu	37	chr18	8824821	8824821	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccccacccctgtctccagacGacctcaagtacatcgaggag	8	17	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8824821	C	C	8824821	3	2	170	1	0	0	0	0	1	0	0	0	8264	1058	37	4	3363	4	KIAA0802	18	8824821	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1825257	8824821	69252427	530	139653											
ANKRD12	23253	broad.mit.edu	37	chr18	9255003	9255003	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatgtcattacagcctgatCttgttcggtatgataataca	7	7	2	2	rs148294667	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9255003	G	G	9255003	3	3	170	1	0	0	0	0	1	0	0	0	640	913	32	4	1768	4	ANKRD12	18	9255003	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	430182	9255003	68822245	531	139654											
MPPE1	65258	broad.mit.edu	37	chr18	11884315	11884315	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcagttactcatttcaGtgattgagaatttctgtgct	8	6	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11884315	C	C	11884315	1	2	170	0	1	0	0	0	0	0	0	0	9834	1044	36	4		4	MPPE1	18	11884315	3'UTR	SNP	G	TCGA-50-6592-01A-11D-1753-08	2629312	11884315	66192933	532	139655											
AFG3L2	10939	broad.mit.edu	37	chr18	12359959	12359959	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgtagacaacaggcaccCgattttctccttctatgccc	6	14	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12359959	T	T	12359959	3	4	170	1	0	0	0	0	1	0	0	0	360	652	23	4	1718	4	AFG3L2	18	12359959	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	475644	12359959	65717289	533	139656											
CEP192	55125	broad.mit.edu	37	chr18	13124693	13124693	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccgcaggcaaatttgaagCtttgcttgtcattcaaacag	9	9	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13124693	G	G	13124693	3	3	170	1	0	0	0	0	1	0	0	0	3281	797	28	4	7712	4	CEP192	18	13124693	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	764734	13124693	64952555	534	139657											
ANKRD30B	374860	broad.mit.edu	37	chr18	14797691	14797691	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagatggtcttctgaaggtAatagcttttatgtctctatc	8	6	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14797691	C	C	14797691	1	2	170	0	1	0	0	0	0	0	0	0	659	377	13	5		5	ANKRD30B	18	14797691	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	1672998	14797691	63279557	535	139658											
AQP4	361	broad.mit.edu	37	chr18	24441225	24441225	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgattatcaactcaaccAggagaccatgaccagcggta	9	10	2	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24441225	T	T	24441225	3	4	170	1	0	0	0	0	1	0	0	0	830	188	7	5	501	5	AQP4	18	24441225	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	9643534	24441225	53636023	536	139659											
DSC1	1823	broad.mit.edu	37	chr18	28714744	28714744	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttccagtgcaagatcggCcaactaagattaattaaaaa	7	7	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28714744	G	G	28714744	3	3	170	1	0	0	0	0	1	0	0	0	4805	739	26	4	1077	4	DSC1	18	28714744	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	4273519	28714744	49362504	537	139660											
C18orf34	374864	broad.mit.edu	37	chr18	30803079	30803079	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattcttacctcagtttcTattaatgcatcaagggtttt	5	7	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30803079	C	C	30803079	3	2	170	1	0	0	0	0	1	0	0	0	1920	1512	53	5	704	5	C18orf34	18	30803079	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	2088335	30803079	47274169	538	139661											
SLC39A6	25800	broad.mit.edu	37	chr18	33694102	33694102	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtgcaggccatcacccaTtatcaccatccaggccagag	8	14	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33694102	C	C	33694102	3	2	170	1	0	0	0	0	1	0	0	0	14736	1493	52	5	494	5	SLC39A6	18	33694102	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	2891023	33694102	44383146	539	139662											
FHOD3	80206	broad.mit.edu	37	chr18	34205327	34205327	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttggacacatgtggttgtGaagacctggcagggaagctg	16	7	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34205327	T	T	34205327	1	4	170	0	1	0	0	0	0	0	0	0	5940	1305	45	3		3	FHOD3	18	34205327	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	511225	34205327	43871921	540	139663											
PIK3C3	5289	broad.mit.edu	37	chr18	39617691	39617691	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagttgttttttaagacGgaagatggaggcaaatatcc	11	6	0	2	rs145164124	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39617691	T	T	39617691	2	4	170	1	0	0	0	0	0	0	0	1	12007	1103	39	1		1	PIK3C3	18	39617691	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	5412364	39617691	38459557	541	139664											
PTBP1	5725	broad.mit.edu	37	chr19	804558	804558	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggcggccctgcaggcggtGaactcggtccagtcggggaa	17	12	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	804558	T	T	804558	2	4	170	1	0	0	0	0	0	0	0	1	12831	1277	45	3		3	PTBP1	19	804558	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08		804558	58324425	542	139665											
BTBD2	55643	broad.mit.edu	37	chr19	1986642	1986642	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggtgccgtagtgggagtCtgggccctgtagggaatagg	18	6	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1986642	T	T	1986642	3	4	170	1	0	0	0	0	1	0	0	0	1553	913	32	4	158	4	BTBD2	19	1986642	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1182084	1986642	57142341	543	139666											
C3	718	broad.mit.edu	37	chr19	6713376	6713376	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgggctcagaggtggcGgggactggggcagggatcaa	22	7	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6713376	A	A	6713376	1	1	170	0	1	0	0	0	0	0	0	0	2226	1131	39	4		4	C3	19	6713376	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	4726734	6713376	52415607	544	139667											
MUC16	94025	broad.mit.edu	37	chr19	9018262	9018262	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtcggggcagatGtgaggtgggtggagcaggca	22	4	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9018262	A	A	9018262	1	1	170	0	1	0	0	0	0	0	0	0	10067	1392	48	4		4	MUC16	19	9018262	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2304886	9018262	50110721	545	139668											
ZNF699	374879	broad.mit.edu	37	chr19	9406091	9406091	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagggtgtctccacagtaTgagatctcacatgttgccta	9	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9406091	C	C	9406091	1	2	170	0	1	0	0	0	0	0	0	0	18228	1479	51	5		5	ZNF699	19	9406091	3'UTR	SNP	T	TCGA-50-6592-01A-11D-1753-08	387829	9406091	49722892	546	139669											
SLC44A2	57153	broad.mit.edu	37	chr19	10738343	10738343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgcagagggcagatgggCccatggtgcacacagcacca	14	11	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10738343	A	A	10738343	1	1	170	0	1	0	0	0	0	0	0	0	14750	754	26	3		3	SLC44A2	19	10738343	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1332252	10738343	48390640	547	139670											
SMARCA4	6597	broad.mit.edu	37	chr19	11145727	11145728	+	Nonsense_Mutation	DNP	GG	TT	TT													ctgacctgtgaggaggaggaGgagaagatgttcggccgtgg							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	11145728	TT	TT	11145727	4	4	170	1	0	0	0	0	0	1	0	0	14884	991	35	2	4199	2	SMARCA4	19	11145727	Nonsense_Mutation	DNP	GG	TCGA-50-6592-01A-11D-1753-08	407384	11145727	47983256	548	139671											
TRMT1	55621	broad.mit.edu	37	chr19	13220612	13220612	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgcccacagtgttcacactCgggggtcacagggggaccac	13	13	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13220612	T	T	13220612	3	4	170	1	0	0	0	0	1	0	0	0	16686	893	31	4	864	4	TRMT1	19	13220612	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2074885	13220612	45908371	549	139672											
CLEC17A	388512	broad.mit.edu	37	chr19	14693909	14693909	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccccagacgcctgagtcGgagagacagggggcagaggt	17	11	0	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14693909	T	T	14693909	1	4	170	0	1	0	0	0	0	0	0	0	3533	1131	39	1		1	CLEC17A	19	14693909	5'UTR	SNP	G	TCGA-50-6592-01A-11D-1753-08	1473297	14693909	44435074	550	139673											
CYP4F2	8529	broad.mit.edu	37	chr19	15990078	15990078	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttggaccatctacaatgTcccccttttccccactgtca	4	16	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15990078	A	A	15990078	1	1	170	0	1	0	0	0	0	0	0	0	4221	1682	58	5		5	CYP4F2	19	15990078	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	1296169	15990078	43138905	551	139674											
MYO9B	4650	broad.mit.edu	37	chr19	17322659	17322659	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcgagggtcctccggctGccggccctgaagctgcagta	16	13	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17322659	A	A	17322659	1	1	170	0	1	0	0	0	0	0	0	0	10179	1334	46	4		4	MYO9B	19	17322659	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	1332581	17322659	41806324	552	139675											
GTPBP3	84705	broad.mit.edu	37	chr19	17452041	17452041	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggcccaggtcccggtcCtgacctgcccccgcacctgc	13	19	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17452041	T	T	17452041	3	4	170	1	0	0	0	0	1	0	0	0	6946	681	24	4	1285	4	GTPBP3	19	17452041	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	129382	17452041	41676942	553	139676											
COMP	1311	broad.mit.edu	37	chr19	18893990	18893990	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccaccagctcagggccctCatagaatcgcaccctgaggg	12	15	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18893990	T	T	18893990	3	4	170	1	0	0	0	0	1	0	0	0	3756	835	29	4	180	4	COMP	19	18893990	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1441949	18893990	40234993	554	139677											
GMIP	51291	broad.mit.edu	37	chr19	19752605	19752606	+	Intron	DNP	CC	AA	AA													tgtccccactgtcctggcctCcagacccccctacctgtgag							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	19752606	AA	AA	19752605	1	1	170	0	1	0	0	0	0	0	0	0	6555	870	30	3		3	GMIP	19	19752605	Intron	DNP	CC	TCGA-50-6592-01A-11D-1753-08	858615	19752605	39376378	555	139678											
ZNF90	7643	broad.mit.edu	37	chr19	20216194	20216194	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggtcaaagagaaagccGgtccttaaaatgtgatttag	10	7	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20216194	A	A	20216194	1	1	170	0	1	0	0	0	0	0	0	0	18328	1131	39	4		4	ZNF90	19	20216194	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	463589	20216194	38912789	556	139679											
ZNF99	7652	broad.mit.edu	37	chr19	22940005	22940005	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttgccacattcttcacAtttgtatggtttcttcccag	6	11	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22940005	G	G	22940005	3	3	170	1	0	0	0	0	1	0	0	0	18333	217	8	5	794	5	ZNF99	19	22940005	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	2723811	22940005	36188978	557	139680											
KIAA0355	9710	broad.mit.edu	37	chr19	34791643	34791643	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatctggatgccctgaacGtcttctgccgtgccagtact	10	12	3	1	rs149799888		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34791643	A	A	34791643	3	1	170	1	0	0	0	0	1	0	0	0	8240	1145	40	4	267	4	KIAA0355	19	34791643	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	11851638	34791643	24337340	558	139681											
USF2	7392	broad.mit.edu	37	chr19	35761683	35761683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaacacagaggacgatcGccccccggacacacccttac	9	17	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35761683	T	T	35761683	3	4	170	1	0	0	0	0	1	0	0	0	17159	1087	38	3	665	3	USF2	19	35761683	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	970040	35761683	23367300	559	139682											
ARHGAP33	115703	broad.mit.edu	37	chr19	36271639	36271639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccactcatcccttccaCcccatttttcgcctagcaga	3	20	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36271639	A	A	36271639	1	1	170	0	1	0	0	0	0	0	0	0	884	522	18	3		3	ARHGAP33	19	36271639	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	509956	36271639	22857344	560	139683											
ZNF790	388536	broad.mit.edu	37	chr19	37314611	37314611	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctccaacatcacatctcTatataaatccctctgttcca	2	14	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37314611	A	A	37314611	4	1	170	1	0	0	0	0	0	1	0	0	18291	1530	53	5	1831	5	ZNF790	19	37314611	Nonsense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	1042972	37314611	21814372	561	139684											
ZNF829	374899	broad.mit.edu	37	chr19	37383497	37383497	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacagttttcaaaggtggaGaggcaatctgtaaaactgac	10	7	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37383497	A	A	37383497	1	1	170	0	1	0	0	0	0	0	0	0	18311	957	33	4		4	ZNF829	19	37383497	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	68886	37383497	21745486	562	139685											
ZNF420	147923	broad.mit.edu	37	chr19	37619576	37619576	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagaaaccatatcaatgTaaggaatgtgggaaagcctt	12	5	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37619576	C	C	37619576	2	2	170	1	0	0	0	0	0	0	0	1	18024	1644	57	5		5	ZNF420	19	37619576	Silent	SNP	T	TCGA-50-6592-01A-11D-1753-08	236079	37619576	21509407	563	139686											
ZNF420	147923	broad.mit.edu	37	chr19	37619928	37619928	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatataaggaatgtgggattGactttagtcatggctcacaa	10	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37619928	T	T	37619928	3	4	170	1	0	0	0	0	1	0	0	0	18024	1290	45	3	2045	3	ZNF420	19	37619928	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	352	37619928	21509055	564	139687											
ZNF383	163087	broad.mit.edu	37	chr19	37734241	37734241	+	Missense_Mutation	SNP	G	T	T													tggtgagaaaccctatgattGtaaggaatgtggaaaggctt							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37734241	T	T	37734241	3	4	170	1	0	0	0	0	1	0	0	0	18000	1377	48	3	1117	3	ZNF383	19	37734241	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	114313	37734241	21394742	565	139688	598	2									
ZNF383	163087	broad.mit.edu	37	chr19	37734245	37734245	+	Silent	SNP	G	A	A													gagaaaccctatgattgtaaGgaatgtggaaaggcttttac							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37734245	A	A	37734245	2	1	170	1	0	0	0	0	0	0	0	1	18000	991	35	4		4	ZNF383	19	37734245	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	4	37734245	21394738	566	139689	598	2									
ZNF781	163115	broad.mit.edu	37	chr19	38161104	38161104	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatacagaggtgttcccacAcatttcgtcaagcttgtcac	7	11	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38161104	G	G	38161104	1	3	170	0	1	0	0	0	0	0	0	0	18283	174	6	5		5	ZNF781	19	38161104	5'UTR	SNP	A	TCGA-50-6592-01A-11D-1753-08	426859	38161104	20967879	567	139690											
LRFN1	57622	broad.mit.edu	37	chr19	39798860	39798860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacgtggctgacccgcgGgagcgacctggagcccttga	15	14	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39798860	T	T	39798860	3	4	170	1	0	0	0	0	1	0	0	0	9024	1232	43	2	590	2	LRFN1	19	39798860	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1637756	39798860	19330123	568	139691											
SELV	348303	broad.mit.edu	37	chr19	40009424	40009424	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagcaatttccgaatcaCctactctttgtaagtgtgtg	9	9	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40009424	T	T	40009424	2	4	170	1	0	0	0	0	0	0	0	1	14136	506	18	4		4	SELV	19	40009424	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	210564	40009424	19119559	569	139692											
LGALS13	29124	broad.mit.edu	37	chr19	40095887	40095887	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagatattgccttccgtttCcgagtgcactttggcaatca	8	11	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40095887	T	T	40095887	2	4	170	1	0	0	0	0	0	0	0	1	8812	854	30	4		4	LGALS13	19	40095887	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	86463	40095887	19033096	570	139693											
LTBP4	8425	broad.mit.edu	37	chr19	41129916	41129916	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgggctcttatcactGtacctgcgagcccccactgg	10	15	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41129916	C	C	41129916	3	2	170	1	0	0	0	0	1	0	0	0	9163	1377	48	4	4368	4	LTBP4	19	41129916	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1034029	41129916	17999067	571	139694											
CYP2A13	1553	broad.mit.edu	37	chr19	41595022	41595022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgcccaagagggggaaGgtggccaggtggatgcaatg	21	6	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41595022	T	T	41595022	1	4	170	0	1	0	0	0	0	0	0	0	4194	1015	35	2		2	CYP2A13	19	41595022	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	465106	41595022	17533961	572	139695											
GRIK5	2901	broad.mit.edu	37	chr19	42557843	42557843	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcatggccagggtgcggtTagagtaccacaccccaatct	10	12	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42557843	A	A	42557843	3	1	170	1	0	0	0	0	1	0	0	0	6843	1754	61	5	1802	5	GRIK5	19	42557843	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	962821	42557843	16571140	573	139696											
MEGF8	1954	broad.mit.edu	37	chr19	42866752	42866752	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagttcaagaggacaggtGagcagtgggcctagttcctg	16	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42866752	C	C	42866752	1	2	170	0	1	0	0	0	0	0	0	0	9556	1305	45	4		4	MEGF8	19	42866752	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	308909	42866752	16262231	574	139697											
CEACAM8	1088	broad.mit.edu	37	chr19	43093016	43093016	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggcataggatccgctgTtctttgtagtgatgttgggg	16	6	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43093016	A	A	43093016	3	1	170	1	0	0	0	0	1	0	0	0	3228	1725	60	5	179	5	CEACAM8	19	43093016	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	226264	43093016	16035967	575	139698											
PSG8	440533	broad.mit.edu	37	chr19	43268091	43268091	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataaggtgaaggtgaaatgtCcagttactcctctattctca	8	8	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43268091	G	G	43268091	3	3	170	1	0	0	0	0	1	0	0	0	12767	855	30	4	910	4	PSG8	19	43268091	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	175075	43268091	15860892	576	139699											
IRGQ	126298	broad.mit.edu	37	chr19	44096657	44096657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgggcagcgctgggagatgCtggtggcaacgccagcagca	17	11	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44096657	A	A	44096657	3	1	170	1	0	0	0	0	1	0	0	0	7909	797	28	3	482	3	IRGQ	19	44096657	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	828566	44096657	15032326	577	139700											
IRGQ	126298	broad.mit.edu	37	chr19	44097241	44097241	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtccagagcaccacattcGggcgctctggggctgggaag	16	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44097241	A	A	44097241	3	1	170	1	0	0	0	0	1	0	0	0	7909	1116	39	4	1066	4	IRGQ	19	44097241	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	584	44097241	15031742	578	139701											
ZNF229	7772	broad.mit.edu	37	chr19	44946863	44946863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctgaagctctagatcAtctacctggtaggaaggtgc	12	10	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44946863	T	T	44946863	1	4	170	0	1	0	0	0	0	0	0	0	17908	232	8	5		5	ZNF229	19	44946863	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	849622	44946863	14182120	579	139702											
QPCTL	54814	broad.mit.edu	37	chr19	46198725	46198725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgctgcggtccctgacaGcaggttggcacgtggagctg	15	13	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46198725	T	T	46198725	3	4	170	1	0	0	0	0	1	0	0	0	12983	971	34	3	392	3	QPCTL	19	46198725	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1251862	46198725	12930258	580	139703											
C5AR1	728	broad.mit.edu	37	chr19	47822946	47822946	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctagtgagaaaaagccacaCaggggaaaagccacatgcct	10	11	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47822946	T	T	47822946	1	4	170	0	1	0	0	0	0	0	0	0	2304	493	17	4		4	C5AR1	19	47822946	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1624221	47822946	11306037	581	139704											
PPFIA3	8541	broad.mit.edu	37	chr19	49651314	49651314	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggggccagagggcctgactCttccctcacctgcccatggc	12	16	2	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49651314	G	G	49651314	1	3	170	0	1	0	0	0	0	0	0	0	12407	928	32	4		4	PPFIA3	19	49651314	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1828368	49651314	9477669	582	139705											
TSKS	60385	broad.mit.edu	37	chr19	50251357	50251357	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccttgagttgaatgcaGtacccctccaactcttctgc	6	15	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50251357	T	T	50251357	4	4	170	1	0	0	0	0	0	1	0	0	16751	1024	36	3	1246	3	TSKS	19	50251357	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	600043	50251357	8877626	583	139706											
AP2A1	160	broad.mit.edu	37	chr19	50306261	50306261	+	Frame_Shift_Del	DEL	A	-	-													aagccgatgagttgctgaatAagtgagtcctgggagtggtg							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50306261	-	-	50306261	7	5	170	1	0	1	0	1	0	0	0	0	741	376	13	0	2302	0	AP2A1	19	50306261	Frame_Shift_Del	DEL	A	TCGA-50-6592-01A-11D-1753-08	54904	50306261	8822722	584	139707											
SHANK1	50944	broad.mit.edu	37	chr19	51165658	51165658	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggatgggcagggacgagGgcctgggcgcagggctgacc	21	10	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51165658	T	T	51165658	3	4	170	1	0	0	0	0	1	0	0	0	14377	1232	43	2	439	2	SHANK1	19	51165658	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	859397	51165658	7963325	585	139708											
ZNF610	162963	broad.mit.edu	37	chr19	52856839	52856839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgttttttaatgatctgcCatttttaatagcttaatatt	4	4	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52856839	A	A	52856839	1	1	170	0	1	0	0	0	0	0	0	0	18163	609	21	2		2	ZNF610	19	52856839	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1691181	52856839	6272144	586	139709											
ZNF701	55762	broad.mit.edu	37	chr19	53077548	53077548	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcaactcatgccttccctCagtccctgtcatctcactta	3	17	5	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53077548	G	G	53077548	1	3	170	0	1	0	0	0	0	0	0	0	18232	841	29	4		4	ZNF701	19	53077548	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	220709	53077548	6051435	587	139710											
ZNF611	81856	broad.mit.edu	37	chr19	53207861	53207861	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacatttattacacttgtaaGatctctcttcattatggatt	4	8	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53207861	T	T	53207861	1	4	170	0	1	0	0	0	0	0	0	0	18164	957	33	3		3	ZNF611	19	53207861	3'UTR	SNP	G	TCGA-50-6592-01A-11D-1753-08	130313	53207861	5921122	588	139711											
ZNF600	162966	broad.mit.edu	37	chr19	53269696	53269696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catatttgtaaggttgctctCcagtatgaattgacttatga	8	6	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53269696	A	A	53269696	3	1	170	1	0	0	0	0	1	0	0	0	18157	855	30	3	859	3	ZNF600	19	53269696	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	61835	53269696	5859287	589	139712											
VN1R2	317701	broad.mit.edu	37	chr19	53762196	53762196	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgtcttccaggtgatcAccatcaaccctaggaactcc	8	13	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53762196	T	T	53762196	3	4	170	1	0	0	0	0	1	0	0	0	17306	159	6	5	570	5	VN1R2	19	53762196	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	492500	53762196	5366787	590	139713											
NLRP5	126206	broad.mit.edu	37	chr19	56565024	56565024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggtaaagtgtcatctcaCcgccgcgtgctgtgagagtc	13	10	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56565024	A	A	56565024	3	1	170	1	0	0	0	0	1	0	0	0	10575	507	18	3	3199	3	NLRP5	19	56565024	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2802828	56565024	2563959	591	139714											
PLCB4	5332	broad.mit.edu	37	chr20	9453406	9453406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatttcattcaatgtcatAccaaccgttatttgtgccca	4	10	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9453406	T	T	9453406	1	4	170	0	1	0	0	0	0	0	0	0	12125	406	14	5		5	PLCB4	20	9453406	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08		9453406	53572114	592	139715											
CST11	140880	broad.mit.edu	37	chr20	23431200	23431200	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaaaccagggtacagcAaacactgagaagaagcagtt	10	8	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23431200	G	G	23431200	2	3	170	1	0	0	0	0	0	0	0	1	4005	127	5	5		5	CST11	20	23431200	Silent	SNP	A	TCGA-50-6592-01A-11D-1753-08	13977794	23431200	39594320	593	139716											
C20orf71	128861	broad.mit.edu	37	chr20	31814864	31814864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgaaagaggtaccccCggccctggagcccccaggga	15	14	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31814864	A	A	31814864	1	1	170	0	1	0	0	0	0	0	0	0	2139	667	23	1		1	C20orf71	20	31814864	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	8383664	31814864	31210656	594	139717											
ZNF341	84905	broad.mit.edu	37	chr20	32340105	32340105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaccgcacacggatgcaGtatgggacattctttattcc	9	11	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32340105	T	T	32340105	1	4	170	0	1	0	0	0	0	0	0	0	17983	1044	36	3		3	ZNF341	20	32340105	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	525241	32340105	30685415	595	139718											
AHCY	191	broad.mit.edu	37	chr20	32877968	32877968	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgataccttcagggatgcCggctgcccacaggataaggt	12	12	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32877968	G	G	32877968	1	3	170	0	1	0	0	0	0	0	0	0	409	667	23	4		4	AHCY	20	32877968	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	537863	32877968	30147552	596	139719											
SPAG4	6676	broad.mit.edu	37	chr20	34207424	34207424	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcgggtcgatggatggggtCgagctgaggcccgggctggg	23	8	0	1	rs112335285		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34207424	G	G	34207424	1	3	170	0	1	0	0	0	0	0	0	0	15096	899	31	4		4	SPAG4	20	34207424	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1329456	34207424	28818096	597	139720											
RBL1	5933	broad.mit.edu	37	chr20	35627292	35627292	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactcgcttcttggttctcTgctcaccttgccttatcatg	6	13	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35627292	G	G	35627292	3	3	170	1	0	0	0	0	1	0	0	0	13217	1580	55	5	133	5	RBL1	20	35627292	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	1419868	35627292	27398228	598	139721											
PTPRT	11122	broad.mit.edu	37	chr20	40944397	40944397	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgcctggaagtagatgCtgtagcttttcaggggagag	16	5	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40944397	G	G	40944397	3	3	170	1	0	0	0	0	1	0	0	0	12920	797	28	4	2361	4	PTPRT	20	40944397	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	5317105	40944397	22081123	599	139722											
KCNK15	60598	broad.mit.edu	37	chr20	43378982	43378982	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtggccgggctgctgGcgtgtgccgccaccctggcc	18	14	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43378982	C	C	43378982	3	2	170	1	0	0	0	0	1	0	0	0	8132	1203	42	4	502	4	KCNK15	20	43378982	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	2434585	43378982	19646538	600	139723											
SULF2	55959	broad.mit.edu	37	chr20	46331298	46331298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgcttctctttcacccCgttccgacacagcgtgtagt	9	15	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46331298	A	A	46331298	3	1	170	1	0	0	0	0	1	0	0	0	15489	652	23	1	2152	1	SULF2	20	46331298	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	2952316	46331298	16694222	601	139724											
PREX1	57580	broad.mit.edu	37	chr20	47296204	47296204	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaccttggacatgatgtcCtccagctcacttcgggcctt	8	15	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47296204	T	T	47296204	2	4	170	1	0	0	0	0	0	0	0	1	12582	680	24	4		4	PREX1	20	47296204	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	964906	47296204	15729316	602	139725											
CDH26	60437	broad.mit.edu	37	chr20	58564276	58564276	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaatagccacataaccaaGagggctcctgttagaaaacc	9	10	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58564276	C	C	58564276	1	2	170	0	1	0	0	0	0	0	0	0	3140	957	33	4		4	CDH26	20	58564276	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	11268072	58564276	4461244	603	139726											
EEF1A2	1917	broad.mit.edu	37	chr20	62121989	62121989	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcgtggtgcatctccactGacttcacctcagtggtgatg	10	13	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62121989	A	A	62121989	3	1	170	1	0	0	0	0	1	0	0	0	4964	1294	45	4	531	4	EEF1A2	20	62121989	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	3557713	62121989	903531	604	139727											
LIPI	149998	broad.mit.edu	37	chr21	15579128	15579128	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagaaagtgaagttaaaaGagattacctgatctcaggca	10	5	1	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15579128	A	A	15579128	1	1	170	0	1	0	0	0	0	0	0	0	8898	957	33	4		4	LIPI	21	15579128	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08		15579128	32550767	605	139728											
DOPEY2	9980	broad.mit.edu	37	chr21	37584329	37584329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcgtgcgcattctctcaGccgccacccagaccctactg	7	18	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37584329	T	T	37584329	3	4	170	1	0	0	0	0	1	0	0	0	4748	971	34	3	860	3	DOPEY2	21	37584329	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	22005201	37584329	10545566	606	139729											
ETS2	2114	broad.mit.edu	37	chr21	40188894	40188895	+	Intron	DNP	AC	GT	GT													gttctgtgtagttttcacctAcatctgccatcttacgtctc							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	40188895	GT	GT	40188894	1	3	170	0	1	0	0	0	0	0	0	0	5318	406	14	5		5	ETS2	21	40188894	Intron	DNP	AC	TCGA-50-6592-01A-11D-1753-08	2604565	40188894	7941001	607	139730											
AGPAT3	56894	broad.mit.edu	37	chr21	45400793	45400793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagtcgtttttcattgcCaacaatcttctcctgcattg	7	10	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45400793	A	A	45400793	1	1	170	0	1	0	0	0	0	0	0	0	388	609	21	2		2	AGPAT3	21	45400793	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	5211899	45400793	2729102	608	139731											
OR11H1	81061	broad.mit.edu	37	chr22	16449060	16449060	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtagagaaggccttatgtcTcccagtgcttgaaggcatac	12	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16449060	C	C	16449060	3	2	170	1	0	0	0	0	1	0	0	0	11020	1559	54	5	237	5	OR11H1	22	16449060	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08		16449060	34855506	609	139732											
SLC25A1	6576	broad.mit.edu	37	chr22	19165156	19165156	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccctccccagcttgccgGttgccccgggagcaccgggc	13	18	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19165156	A	A	19165156	1	1	170	0	1	0	0	0	0	0	0	0	14585	1276	44	4		4	SLC25A1	22	19165156	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	2716096	19165156	32139410	610	139733											
ARVCF	421	broad.mit.edu	37	chr22	19965107	19965107	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcacacgcagttctccacCgactgcagggagaggtgagt	13	11	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19965107	A	A	19965107	2	1	170	1	0	0	0	0	0	0	0	1	1007	639	23	1		1	ARVCF	22	19965107	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	799951	19965107	31339459	611	139734											
CABIN1	23523	broad.mit.edu	37	chr22	24445547	24445547	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcataaactgtctctttcccCgccagcatgtctgtacttca	5	14	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24445547	T	T	24445547	1	4	170	0	1	0	0	0	0	0	0	0	2554	667	23	4		4	CABIN1	22	24445547	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	4480440	24445547	26859019	612	139735											
EWSR1	2130	broad.mit.edu	37	chr22	29664520	29664520	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccccaaccgggcgggccGgttctggaatcttccggcgc	13	17	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29664520	A	A	29664520	1	1	170	0	1	0	0	0	0	0	0	0	5338	1131	39	4		4	EWSR1	22	29664520	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	5218973	29664520	21640046	613	139736											
CSF2RB	1439	broad.mit.edu	37	chr22	37334309	37334309	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtcctgcagcaagtggGcgactattgcttcctccccg	10	15	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37334309	A	A	37334309	3	1	170	1	0	0	0	0	1	0	0	0	3969	1203	42	4	2509	4	CSF2RB	22	37334309	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	7669789	37334309	13970257	614	139737											
IL2RB	3560	broad.mit.edu	37	chr22	37533835	37533835	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctccacctcccactttgtAcctgccactcctccctcctg	3	22	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37533835	C	C	37533835	1	2	170	0	1	0	0	0	0	0	0	0	7757	406	14	5		5	IL2RB	22	37533835	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	199526	37533835	13770731	615	139738											
MICALL1	85377	broad.mit.edu	37	chr22	38328974	38328974	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttaccctcttccctcatCagtaacagcgcagggcaggg	9	16	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38328974	T	T	38328974	1	4	170	0	1	0	0	0	0	0	0	0	9666	841	29	4		4	MICALL1	22	38328974	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	795139	38328974	12975592	616	139739											
CELSR1	9620	broad.mit.edu	37	chr22	46795764	46795764	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactccacatcggaggggccGtgggacacctcaaactggag	14	12	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46795764	A	A	46795764	2	1	170	1	0	0	0	0	0	0	0	1	3251	1136	40	4		4	CELSR1	22	46795764	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	8466790	46795764	4508802	617	139740											
GRAMD4	23151	broad.mit.edu	37	chr22	47059697	47059697	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcagagccggcgggtgcAttaaccctgggctcccatct	12	14	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47059697	G	G	47059697	1	3	170	0	1	0	0	0	0	0	0	0	6818	232	8	5		5	GRAMD4	22	47059697	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	263933	47059697	4244869	618	139741											
ARSA	410	broad.mit.edu	37	chr22	51065403	51065403	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacaggttggccaacagtggGatggggaccaggccctggtc	17	10	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51065403	A	A	51065403	2	1	170	1	0	0	0	0	0	0	0	1	991	1164	41	4		4	ARSA	22	51065403	Silent	SNP	G	TCGA-50-6592-01A-11D-1753-08	4005706	51065403	239163	619	139742											
IL3RA	3563	broad.mit.edu	37	chrX	1475073	1475073	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagaaaaagaattgatttCttgtactcctaaatcctaaa	4	6	1	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1475073	A	A	1475073	1	1	170	0	1	0	0	0	0	0	0	0	7765	928	32	3		3	IL3RA	23	1475073	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08		1475073	153795487	620	139743											
MAGEB18	286514	broad.mit.edu	37	chrX	26157780	26157780	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaattatgaatatgatGggtgtatatgccgataggaa	13	2	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26157780	C	C	26157780	3	2	170	1	0	0	0	0	1	0	0	0	9267	1348	47	4	680	4	MAGEB18	23	26157780	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	24682707	26157780	129112780	621	139744											
SYTL5	94122	broad.mit.edu	37	chrX	37935964	37935964	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcagacaggtaagagtcAtacagattgagcaatgatgt	12	5	2	5			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37935964	C	C	37935964	1	2	170	0	1	0	0	0	0	0	0	0	15605	232	8	5		5	SYTL5	23	37935964	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	11778184	37935964	117334596	622	139745											
PJA1	64219	broad.mit.edu	37	chrX	68381955	68381955	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcttcgatatttccgaCgcagagcagcaatccactct	8	14	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68381955	T	T	68381955	3	4	170	1	0	0	0	0	1	0	0	0	12056	536	19	4	808	4	PJA1	23	68381955	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	30445991	68381955	86888605	623	139746											
SLC16A2	6567	broad.mit.edu	37	chrX	73740833	73740833	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctctgcagcatgggtcGgagccctcgcgatgggtatg	14	10	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73740833	T	T	73740833	4	4	170	1	0	0	0	0	0	1	0	0	14521	1117	39	1	667	1	SLC16A2	23	73740833	Nonsense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	5358878	73740833	81529727	624	139747											
P2RY10	27334	broad.mit.edu	37	chrX	78216921	78216922	+	Missense_Mutation	DNP	CC	AA	AA													gtctctgctgccttttggatCcaattctttattactttatg							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	78216922	AA	AA	78216921	3	1	170	1	0	0	0	0	1	0	0	0	11441	855	30	3	906	3	P2RY10	23	78216921	Missense_Mutation	DNP	CC	TCGA-50-6592-01A-11D-1753-08	4476088	78216921	77053639	625	139748											
DACH2	117154	broad.mit.edu	37	chrX	86068109	86068109	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacagataagatgaactgcAtgtcatttcctgtaccttga	7	8	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86068109	T	T	86068109	1	4	170	0	1	0	0	0	0	0	0	0	4254	232	8	5		5	DACH2	23	86068109	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	7851188	86068109	69202451	626	139749											
PCDH11X	27328	broad.mit.edu	37	chrX	91133114	91133114	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gattcacaaactggtgtcatCcgaccaaatatttcatttga	6	9	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91133114	G	G	91133114	3	3	170	1	0	0	0	0	1	0	0	0	11602	845	30	4	1881	4	PCDH11X	23	91133114	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	5065005	91133114	64137446	627	139750											
NOX1	27035	broad.mit.edu	37	chrX	100098831	100098831	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaataccagggagtcaaggcTtgagaggcacattcttatcc	11	9	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100098831	A	A	100098831	1	1	170	0	1	0	0	0	0	0	0	0	10651	1624	56	5		5	NOX1	23	100098831	3'UTR	SNP	T	TCGA-50-6592-01A-11D-1753-08	8965717	100098831	55171729	628	139751											
TAF7L	54457	broad.mit.edu	37	chrX	100548084	100548084	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtgtagtcatgtgaccTggagggttccagaaccttcg	12	10	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100548084	A	A	100548084	1	1	170	0	1	0	0	0	0	0	0	0	15652	1595	55	5		5	TAF7L	23	100548084	5'Flank	SNP	T	TCGA-50-6592-01A-11D-1753-08	449253	100548084	54722476	629	139752											
NRK	203447	broad.mit.edu	37	chrX	105181473	105181473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgatctaatctatatctgaTggacagaagtggaaaggctg	11	7	3	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105181473	A	A	105181473	3	1	170	1	0	0	0	0	1	0	0	0	10750	1464	51	5	3784	5	NRK	23	105181473	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	4633389	105181473	50089087	630	139753											
RHOXF1	158800	broad.mit.edu	37	chrX	119249502	119249502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggaccctccatggccgCctgggccggctcctccggcg	14	19	0	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119249502	A	A	119249502	3	1	170	1	0	0	0	0	1	0	0	0	13456	739	26	3	295	3	RHOXF1	23	119249502	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	14068029	119249502	36021058	631	139754											
THOC2	57187	broad.mit.edu	37	chrX	122747257	122747258	+	Missense_Mutation	DNP	CC	AT	AT													tttcctaatttacctttttgCcaccggaggagattttatcc							TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	122747258	AT	AT	122747257	3	1	170	1	0	0	0	0	1	0	0	0	15988	739	26	3	123	3	THOC2	23	122747257	Missense_Mutation	DNP	CC	TCGA-50-6592-01A-11D-1753-08	3497755	122747257	32523303	632	139755											
STAG2	10735	broad.mit.edu	37	chrX	123197114	123197114	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattcagttcattatatcaTagcgtttgtttatatttctt	4	5	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123197114	C	C	123197114	1	2	170	0	1	0	0	0	0	0	0	0	15361	1421	49	5		5	STAG2	23	123197114	Intron	SNP	T	TCGA-50-6592-01A-11D-1753-08	449857	123197114	32073446	633	139756											
ODZ1	10178	broad.mit.edu	37	chrX	123540180	123540180	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttaccttgttttaaaatAtatatggtactagttgccgt	6	6	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123540180	T	T	123540180	4	4	170	1	0	0	0	0	0	1	0	0	10929	456	16	5	3084	5	ODZ1	23	123540180	Nonsense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	343066	123540180	31730380	634	139757											
ODZ1	10178	broad.mit.edu	37	chrX	123637470	123637470	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctcctaggttagaagcatCcatctcaaaaccttgtaaaa	6	11	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123637470	G	G	123637470	3	3	170	1	0	0	0	0	1	0	0	0	10929	855	30	4	4869	4	ODZ1	23	123637470	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	97290	123637470	31633090	635	139758											
XPNPEP2	7512	broad.mit.edu	37	chrX	128881796	128881796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccggctgctattccgtagGtggcaaacttcatcatcaga	9	12	3	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128881796	T	T	128881796	1	4	170	0	1	0	0	0	0	0	0	0	17570	1276	44	3		3	XPNPEP2	23	128881796	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	5244326	128881796	26388764	636	139759											
UTP14A	10813	broad.mit.edu	37	chrX	129042031	129042031	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtttttccttttctgtgtCttagggggacaatgatggag	12	5	2	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129042031	T	T	129042031	1	4	170	0	1	0	0	0	0	0	0	0	17222	928	32	4		4	UTP14A	23	129042031	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	160235	129042031	26228529	637	139760											
SLC25A14	9016	broad.mit.edu	37	chrX	129484689	129484689	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttccactatagccaatcCcaccgatgttctaaaggtaa	5	12	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129484689	T	T	129484689	3	4	170	1	0	0	0	0	1	0	0	0	14590	623	22	4	500	4	SLC25A14	23	129484689	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	442658	129484689	25785871	638	139761											
FRMD7	90167	broad.mit.edu	37	chrX	131231335	131231335	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtccagggtccactgggaaAaatttcaccataaatttgaa	8	8	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131231335	T	T	131231335	3	4	170	1	0	0	0	0	1	0	0	0	6115	11	1	5	1937	5	FRMD7	23	131231335	Missense_Mutation	SNP	A	TCGA-50-6592-01A-11D-1753-08	1746646	131231335	24039225	639	139762											
ZNF75D	7626	broad.mit.edu	37	chrX	134428212	134428212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcagaagaaaagtacatGtcaagaagaaaatcacatga	9	5	2	6			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134428212	A	A	134428212	1	1	170	0	1	0	0	0	0	0	0	0	18263	1392	48	4		4	ZNF75D	23	134428212	Intron	SNP	G	TCGA-50-6592-01A-11D-1753-08	3196877	134428212	20842348	640	139763											
ZNF449	203523	broad.mit.edu	37	chrX	134494262	134494262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacagttagaaaatcaatGggaaacccccccagaggatt	9	9	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134494262	T	T	134494262	3	4	170	1	0	0	0	0	1	0	0	0	18047	1357	47	2	832	2	ZNF449	23	134494262	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	66050	134494262	20776298	641	139764											
ARHGEF6	9459	broad.mit.edu	37	chrX	135825773	135825773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatttcacggacataattaCtggggaaccagcctgttctc	8	10	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135825773	A	A	135825773	3	1	170	1	0	0	0	0	1	0	0	0	912	565	20	3	1770	3	ARHGEF6	23	135825773	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1331511	135825773	19444787	642	139765											
ATP11C	286410	broad.mit.edu	37	chrX	138914275	138914275	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaagacctcaaaacccaacCtggctgaaaagaggagaaat	8	11	1	4			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138914275	G	G	138914275	1	3	170	0	1	0	0	0	0	0	0	0	1125	696	24	4		4	ATP11C	23	138914275	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	3088502	138914275	16356285	643	139766											
CXorf66	347487	broad.mit.edu	37	chrX	139040411	139040411	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataatcagagaaggtgttaAgtaaccaagtttttttccac	7	6	1	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139040411	G	G	139040411	1	3	170	0	1	0	0	0	0	0	0	0	4151	87	3	5		5	CXorf66	23	139040411	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	126136	139040411	16230149	644	139767											
MAGEC3	139081	broad.mit.edu	37	chrX	140969709	140969709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccacgttatgaattcCtgtggggtcctagagcccat	9	13	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140969709	A	A	140969709	1	1	170	0	1	0	0	0	0	0	0	0	9274	696	24	2		2	MAGEC3	23	140969709	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1929298	140969709	14300851	645	139768											
SPANXN3	139067	broad.mit.edu	37	chrX	142605119	142605119	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctttcaccctcaccttcCcttcaaaacctgacaatctt	1	16	5	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142605119	T	T	142605119	1	4	170	0	1	0	0	0	0	0	0	0	15108	638	22	4		4	SPANXN3	23	142605119	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1635410	142605119	12665441	646	139769											
MTM1	4534	broad.mit.edu	37	chrX	149761155	149761155	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagggtaagttgaattttcAgatttatctgtctctttcct	8	6	3	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149761155	T	T	149761155	1	4	170	0	1	0	0	0	0	0	0	0	10031	203	7	5		5	MTM1	23	149761155	Intron	SNP	A	TCGA-50-6592-01A-11D-1753-08	7156036	149761155	5509405	647	139770											
PASD1	139135	broad.mit.edu	37	chrX	150770096	150770096	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catttctgtcaaagccctctCcctcgtcctgtgttcccgtt	6	16	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150770096	T	T	150770096	1	4	170	0	1	0	0	0	0	0	0	0	11565	870	30	4		4	PASD1	23	150770096	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	1008941	150770096	4500464	648	139771											
CNGA2	1260	broad.mit.edu	37	chrX	150906871	150906871	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgttcacttgccactctcCcactctctgtgggtgtcagg	9	15	4	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150906871	G	G	150906871	1	3	170	0	1	0	0	0	0	0	0	0	3629	638	22	4		4	CNGA2	23	150906871	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	136775	150906871	4363689	649	139772											
MAGEA5	4104	broad.mit.edu	37	chrX	151284010	151284010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactcttctgctcaagagaCatgacgactctggtcaccgc	9	13	5	3			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151284010	A	A	151284010	3	1	170	1	0	0	0	0	1	0	0	0	9259	478	17	3	375	3	MAGEA5	23	151284010	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	377139	151284010	3986550	650	139773											
MAGEA12	4111	broad.mit.edu	37	chrX	151900849	151900849	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgggcaggagctagtgCtgctccggggcctgtctcct	16	11	1	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151900849	A	A	151900849	1	1	170	0	1	0	0	0	0	0	0	0	9254	812	28	3		3	MAGEA12	23	151900849	5'UTR	SNP	C	TCGA-50-6592-01A-11D-1753-08	616839	151900849	3369711	651	139774											
HCFC1	3054	broad.mit.edu	37	chrX	153220590	153220590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtggtggcggtgttggtgGtgcccgtctcgtgggtctcg	20	9	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153220590	T	T	153220590	3	4	170	1	0	0	0	0	1	0	0	0	7057	1261	44	3	2887	3	HCFC1	23	153220590	Missense_Mutation	SNP	G	TCGA-50-6592-01A-11D-1753-08	1319741	153220590	2049970	652	139775											
IRAK1	3654	broad.mit.edu	37	chrX	153279704	153279704	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagccactccagcctccTcagcctcctcttccaccagg	5	20	3	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153279704	G	G	153279704	3	3	170	1	0	0	0	0	1	0	0	0	7891	1551	54	5	826	5	IRAK1	23	153279704	Missense_Mutation	SNP	T	TCGA-50-6592-01A-11D-1753-08	59114	153279704	1990856	653	139776											
FLNA	2316	broad.mit.edu	37	chrX	153588197	153588197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggttggccacacgggcCttgacgtgcggccctccggt	17	13	0	1			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153588197	A	A	153588197	3	1	170	1	0	0	0	0	1	0	0	0	5991	680	24	2	4165	2	FLNA	23	153588197	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	308493	153588197	1682363	654	139777											
FLNA	2316	broad.mit.edu	37	chrX	153590146	153590146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccataagtgacattgacgcCtactggaccctgggaagggt	12	10	0	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153590146	A	A	153590146	3	1	170	1	0	0	0	0	1	0	0	0	5991	681	24	2	5223	2	FLNA	23	153590146	Missense_Mutation	SNP	C	TCGA-50-6592-01A-11D-1753-08	1949	153590146	1680414	655	139778											
ATP6AP1	537	broad.mit.edu	37	chrX	153663818	153663818	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtggcccgcacgcagccCtctccctggcagatgatgct	11	17	1	2			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153663818	A	A	153663818	2	1	170	1	0	0	0	0	0	0	0	1	1169	668	24	2		2	ATP6AP1	23	153663818	Silent	SNP	C	TCGA-50-6592-01A-11D-1753-08	73672	153663818	1606742	656	139779											
LAGE3	8270	broad.mit.edu	37	chrX	153706571	153706571	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctcatccttggatgtccCccatgtctccatgggccgcc	11	16	2	0			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153706571	T	T	153706571	1	4	170	0	1	0	0	0	0	0	0	0	8673	638	22	4		4	LAGE3	23	153706571	Intron	SNP	C	TCGA-50-6592-01A-11D-1753-08	42753	153706571	1563989	657	139780											
PLCH2	9651	broad.mit.edu	37	chr1	2420731	2420731	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atctgactgacatccttgggGacaagctggacctgtcatca	10	11	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2420731	A	A	2420731	3	1	171	1	0	0	0	0	1	0	0	0	12133	1174	41	4	1355	4	PLCH2	1	2420731	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08		2420731	246829890	1	139781											
CHD5	26038	broad.mit.edu	37	chr1	6190214	6190214	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacagaacctgcctgaggCccgggatgagaggccccctg	15	13	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6190214	T	T	6190214	1	4	171	0	1	0	0	0	0	0	0	0	3359	754	26	4		4	CHD5	1	6190214	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3769483	6190214	243060407	2	139782											
PRAMEF2	65122	broad.mit.edu	37	chr1	12919770	12919770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagatacctcttccagtgGgtttaccaaaggagaggttt	11	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12919770	T	T	12919770	3	4	171	1	0	0	0	0	1	0	0	0	12537	1241	43	2	516	2	PRAMEF2	1	12919770	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	6729556	12919770	236330851	3	139783											
CTRC	11330	broad.mit.edu	37	chr1	15772300	15772300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccctccccctcactcaCccatcccctcactcattcac	1	25	5	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15772300	A	A	15772300	1	1	171	0	1	0	0	0	0	0	0	0	4061	522	18	3		3	CTRC	1	15772300	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2852530	15772300	233478321	4	139784											
ATP13A2	23400	broad.mit.edu	37	chr1	17331296	17331296	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccggccatcctctgcctggGactgtggggacggctccagg	15	14	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17331296	A	A	17331296	3	1	171	1	0	0	0	0	1	0	0	0	1128	1174	41	4	3510	4	ATP13A2	1	17331296	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1558996	17331296	231919325	5	139785											
PADI4	23569	broad.mit.edu	37	chr1	17666217	17666217	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgctgatgaccctgagcacGaagacccccaaggacttctt	9	14	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17666217	A	A	17666217	2	1	171	1	0	0	0	0	0	0	0	1	11474	1045	37	4		4	PADI4	1	17666217	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	334921	17666217	231584404	6	139786											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17991008	17991008	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggcccgggcctgtccgcaCcctgttgagcctggaggatg	17	13	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17991008	G	G	17991008	3	3	171	1	0	0	0	0	1	0	0	0	897	507	18	4	3025	4	ARHGEF10L	1	17991008	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	324791	17991008	231259613	7	139787											
KIF17	57576	broad.mit.edu	37	chr1	20992836	20992836	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtcctcctgccgagatgCagatgcccgtggtcacgtcc	12	15	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20992836	A	A	20992836	1	1	171	0	1	0	0	0	0	0	0	0	8349	725	25	3		3	KIF17	1	20992836	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3001828	20992836	228257785	8	139788											
SFPQ	6421	broad.mit.edu	37	chr1	35652958	35652958	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaacatggtaaagttcAaaagttcatcatgtgaatta	6	4	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35652958	G	G	35652958	1	3	171	0	1	0	0	0	0	0	0	0	14273	145	5	5		5	SFPQ	1	35652958	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	14660122	35652958	213597663	9	139789											
KIAA0467	23334	broad.mit.edu	37	chr1	43900849	43900849	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaggtatttcagttccctGacctcatgctccttctccca	7	14	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43900849	T	T	43900849	1	4	171	0	1	0	0	0	0	0	0	0	8248	1305	45	3		3	KIAA0467	1	43900849	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	8247891	43900849	205349772	10	139790											
ERI3	79033	broad.mit.edu	37	chr1	44818453	44818453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgcatcagcccccaccCcctaccctccaagcccaaat	3	21	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44818453	A	A	44818453	1	1	171	0	1	0	0	0	0	0	0	0	5271	638	22	2		2	ERI3	1	44818453	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	917604	44818453	204432168	11	139791											
BSND	7809	broad.mit.edu	37	chr1	55472787	55472787	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagtgaggaccaccgctcCttgctggcccctgagatggg	13	13	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55472787	T	T	55472787	2	4	171	1	0	0	0	0	0	0	0	1	1540	668	24	4		4	BSND	1	55472787	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	10654334	55472787	193777834	12	139792											
C1orf168	199920	broad.mit.edu	37	chr1	57185676	57185676	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaactcatgatttaaagtAtaaaatcaaacagcttactt	5	6	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57185676	G	G	57185676	1	3	171	0	1	0	0	0	0	0	0	0	2032	464	16	5		5	C1orf168	1	57185676	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	1712889	57185676	192064945	13	139793											
DAB1	1600	broad.mit.edu	37	chr1	58522101	58522101	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgcagcgaataggctgcaCgtggccgcggccctttttgg	15	11	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58522101	G	G	58522101	1	3	171	0	1	0	0	0	0	0	0	0	4250	551	19	4		4	DAB1	1	58522101	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1336425	58522101	190728520	14	139794											
KANK4	163782	broad.mit.edu	37	chr1	62740490	62740490	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagtgatgcctcccttgGcaccacgggagaccagtttt	10	14	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62740490	T	T	62740490	3	4	171	1	0	0	0	0	1	0	0	0	8049	1203	42	3	2733	3	KANK4	1	62740490	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	4218389	62740490	186510131	15	139795											
PDE4B	5142	broad.mit.edu	37	chr1	66723462	66723462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccttaaccgtttaaaaCatttttcttctaggtccttg	5	9	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66723462	A	A	66723462	1	1	171	0	1	0	0	0	0	0	0	0	11734	493	17	3		3	PDE4B	1	66723462	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3982972	66723462	182527159	16	139796											
LRRIQ3	127255	broad.mit.edu	37	chr1	74507380	74507380	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcggagtttcataccagctCtttgtggtgcaaaaaactct	8	9	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74507380	T	T	74507380	3	4	171	1	0	0	0	0	1	0	0	0	9117	913	32	4	647	4	LRRIQ3	1	74507380	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	7783918	74507380	174743241	17	139797											
TNNI3K	51086	broad.mit.edu	37	chr1	74905377	74905377	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttataacttcaagaaaatTttttttcacaaaatgattag	3	4	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74905377	G	G	74905377	1	3	171	0	1	0	0	0	0	0	0	0	16452	1856	64	5		5	TNNI3K	1	74905377	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	397997	74905377	174345244	18	139798											
C1orf173	127254	broad.mit.edu	37	chr1	75065247	75065247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaccttcacatgtaccCcttatttaaaagttagaaaa	3	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75065247	A	A	75065247	1	1	171	0	1	0	0	0	0	0	0	0	2034	638	22	2		2	C1orf173	1	75065247	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	159870	75065247	174185374	19	139799											
C1orf173	127254	broad.mit.edu	37	chr1	75086594	75086594	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgttttatgaatccttcttGaatcctgaaataaacagaaa	5	6	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75086594	C	C	75086594	4	2	171	1	0	0	0	0	0	1	0	0	2034	1294	45	4	3796	4	C1orf173	1	75086594	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	21347	75086594	174164027	20	139800											
FUBP1	8880	broad.mit.edu	37	chr1	78425923	78425923	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatgcatttccccatccctGgggagcatatggggctggag	13	10	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78425923	A	A	78425923	4	1	171	1	0	0	0	0	0	1	0	0	6152	1357	47	4	432	4	FUBP1	1	78425923	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	3339329	78425923	170824698	21	139801											
ELTD1	64123	broad.mit.edu	37	chr1	79392809	79392809	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taagtatatttagtgaaattCttataaaacaaagtgtattt	5	2	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79392809	G	G	79392809	1	3	171	0	1	0	0	0	0	0	0	0	5126	928	32	4		4	ELTD1	1	79392809	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	966886	79392809	169857812	22	139802											
CLCA4	22802	broad.mit.edu	37	chr1	87029468	87029468	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaggcatggctatttaaaTtttctaaactgacttcaggc	7	8	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87029468	G	G	87029468	1	3	171	0	1	0	0	0	0	0	0	0	3490	1508	52	5		5	CLCA4	1	87029468	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	7636659	87029468	162221153	23	139803											
GLMN	11146	broad.mit.edu	37	chr1	92755673	92755673	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagctgtaaactttactttgGtgtagtattgacattttgag	9	4	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92755673	C	C	92755673	1	2	171	0	1	0	0	0	0	0	0	0	6512	1276	44	4		4	GLMN	1	92755673	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	5726205	92755673	156494948	24	139804											
COL11A1	1301	broad.mit.edu	37	chr1	103444196	103444196	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagcagacatatatcttttCtctgaaatctaaatacttgc	4	8	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103444196	A	A	103444196	1	1	171	0	1	0	0	0	0	0	0	0	3699	928	32	3		3	COL11A1	1	103444196	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	10688523	103444196	145806425	25	139805											
VAV3	10451	broad.mit.edu	37	chr1	108247311	108247311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggtatattaaacggtgCaaaattctgcccatatgaaa	8	6	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108247311	A	A	108247311	1	1	171	0	1	0	0	0	0	0	0	0	17260	725	25	3		3	VAV3	1	108247311	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	4803115	108247311	141003310	26	139806											
FAM102B	284611	broad.mit.edu	37	chr1	109148824	109148824	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattatgtgatatccttatAgtattttctgtctttggcag	7	6	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109148824	T	T	109148824	1	4	171	0	1	0	0	0	0	0	0	0	5429	435	15	5		5	FAM102B	1	109148824	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	901513	109148824	140101797	27	139807											
AMIGO1	57463	broad.mit.edu	37	chr1	110050444	110050444	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagggtgtcatggtgtccgTgcaaggtgaaattgtgcact	15	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110050444	C	C	110050444	3	2	171	1	0	0	0	0	1	0	0	0	575	1696	59	5	394	5	AMIGO1	1	110050444	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	901620	110050444	139200177	28	139808											
KCNA2	3737	broad.mit.edu	37	chr1	111145816	111145816	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccatgcagaaccagatacAcactgtagaacacactgact	6	12	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111145816	G	G	111145816	1	3	171	0	1	0	0	0	0	0	0	0	8073	174	6	5		5	KCNA2	1	111145816	3'UTR	SNP	A	TCGA-50-6593-01A-11D-1753-08	1095372	111145816	138104805	29	139809											
PDE4DIP	9659	broad.mit.edu	37	chr1	144882871	144882871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcaaggcaaaggctcaGcatggtgttcctgcaggaaa	11	9	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144882871	T	T	144882871	3	4	171	1	0	0	0	0	1	0	0	0	11737	962	34	3	3976	3	PDE4DIP	1	144882871	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	33737055	144882871	104367750	30	139810											
PDE4DIP	9659	broad.mit.edu	37	chr1	144915608	144915608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatctcactctgccctggtCcaagtttgcagagcagtgtt	9	12	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144915608	A	A	144915608	3	1	171	1	0	0	0	0	1	0	0	0	11737	855	30	3	5357	3	PDE4DIP	1	144915608	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	32737	144915608	104335013	31	139811											
VPS45	11311	broad.mit.edu	37	chr1	150039930	150039930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccatgaacgtggtttttGctgtgaagcagtacatttcc	10	10	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150039930	T	T	150039930	3	4	171	1	0	0	0	0	1	0	0	0	17338	1319	46	3	18	3	VPS45	1	150039930	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	5124322	150039930	99210691	32	139812											
FLG	2312	broad.mit.edu	37	chr1	152286898	152286898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttcttttttttcagaaCtagattcatgccttttcccc	3	11	4	2	rs113297198		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152286898	A	A	152286898	3	1	171	1	0	0	0	0	1	0	0	0	5979	565	20	3	11725	3	FLG	1	152286898	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2246968	152286898	96963723	33	139813											
LCE1F	353137	broad.mit.edu	37	chr1	152748857	152748857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccaccgagatgtcttgcCagcagagccagcagcagtgc	12	15	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152748857	A	A	152748857	3	1	171	1	0	0	0	0	1	0	0	0	8736	595	21	2	12	2	LCE1F	1	152748857	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	461959	152748857	96501764	34	139814											
LCE1A	353131	broad.mit.edu	37	chr1	152799832	152799832	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctctgacttatttgaacAggttttaaaaatgtagcaaa	6	6	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152799832	T	T	152799832	1	4	171	0	1	0	0	0	0	0	0	0	8731	203	7	5		5	LCE1A	1	152799832	5'Flank	SNP	A	TCGA-50-6593-01A-11D-1753-08	50975	152799832	96450789	35	139815											
PKLR	5313	broad.mit.edu	37	chr1	155261655	155261655	+	Frame_Shift_Del	DEL	G	-	-													tcggcataagtggacctggcGggcagcctgggcagagcggg							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155261655	-	-	155261655	7	5	171	1	0	1	0	1	0	0	0	0	12071	1116	39	0	222	0	PKLR	1	155261655	Frame_Shift_Del	DEL	G	TCGA-50-6593-01A-11D-1753-08	2461823	155261655	93988966	36	139816											
GON4L	54856	broad.mit.edu	37	chr1	155815398	155815398	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttatttgaaaaacacatacaGaatgtttaagagggtgaatg	9	3	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155815398	A	A	155815398	1	1	171	0	1	0	0	0	0	0	0	0	6636	957	33	4		4	GON4L	1	155815398	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	553743	155815398	93435223	37	139817											
RHBG	57127	broad.mit.edu	37	chr1	156354339	156354339	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcctgctgaagctaccctTtctggactccccccccagac	7	19	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156354339	G	G	156354339	3	3	171	1	0	0	0	0	1	0	0	0	13433	1841	64	5	1290	5	RHBG	1	156354339	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	538941	156354339	92896282	38	139818											
APCS	325	broad.mit.edu	37	chr1	159557666	159557666	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactgtgttgtctgctaccCtcatcctggtcactgcttct	7	15	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159557666	A	A	159557666	1	1	171	0	1	0	0	0	0	0	0	0	769	696	24	2		2	APCS	1	159557666	5'UTR	SNP	C	TCGA-50-6593-01A-11D-1753-08	3203327	159557666	89692955	39	139819											
FCRL6	343413	broad.mit.edu	37	chr1	159783300	159783300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccttccatcccagatacCacccacagctccaggtggag	8	18	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159783300	A	A	159783300	3	1	171	1	0	0	0	0	1	0	0	0	5856	594	21	2	1057	2	FCRL6	1	159783300	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	225634	159783300	89467321	40	139820											
ATP1A4	480	broad.mit.edu	37	chr1	160125911	160125911	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatcaggaggccaagagctCcaagatcatggagtctttta	10	8	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160125911	T	T	160125911	3	4	171	1	0	0	0	0	1	0	0	0	1135	855	30	4	502	4	ATP1A4	1	160125911	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	342611	160125911	89124710	41	139821											
DCAF8	50717	broad.mit.edu	37	chr1	160210208	160210208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagggaaaaataagaaaaCaggatagtgaccaccttagt	11	5	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160210208	A	A	160210208	1	1	171	0	1	0	0	0	0	0	0	0	4309	493	17	3		3	DCAF8	1	160210208	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	84297	160210208	89040413	42	139822											
COPA	1314	broad.mit.edu	37	chr1	160260101	160260101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaatgggcacagtagaCaggtattggggtgttcatca	12	9	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160260101	A	A	160260101	1	1	171	0	1	0	0	0	0	0	0	0	3759	493	17	3		3	COPA	1	160260101	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	49893	160260101	88990520	43	139823											
CD84	8832	broad.mit.edu	37	chr1	160535531	160535531	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcttttccagctgcttcCggccctgagaacataaaaag	9	11	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160535531	A	A	160535531	2	1	171	1	0	0	0	0	0	0	0	1	3072	639	23	1		1	CD84	1	160535531	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	275430	160535531	88715090	44	139824											
FCRLA	84824	broad.mit.edu	37	chr1	161680999	161680999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttctctggaccatagaCtggctgatcctccaaggtcc	8	14	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161680999	A	A	161680999	3	1	171	1	0	0	0	0	1	0	0	0	5857	579	20	3	317	3	FCRLA	1	161680999	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1145468	161680999	87569622	45	139825											
XCL2	6846	broad.mit.edu	37	chr1	168511287	168511287	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgattctgctaactggCagtcgctgggtagtgaggct	14	8	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168511287	T	T	168511287	2	4	171	1	0	0	0	0	0	0	0	1	17551	697	25	4		4	XCL2	1	168511287	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	6830288	168511287	80739334	46	139826											
XCL1	6375	broad.mit.edu	37	chr1	168549359	168549359	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctcactacccagcgactGccggttagcagaatcaagac	9	14	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168549359	A	A	168549359	2	1	171	1	0	0	0	0	0	0	0	1	17550	1306	46	4		4	XCL1	1	168549359	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	38072	168549359	80701262	47	139827											
KLHL20	27252	broad.mit.edu	37	chr1	173703228	173703228	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atacctcccagataacagtaGaagagggcaatgttcagact	9	9	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173703228	A	A	173703228	3	1	171	1	0	0	0	0	1	0	0	0	8446	943	33	4	406	4	KLHL20	1	173703228	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	5153869	173703228	75547393	48	139828											
TNR	7143	broad.mit.edu	37	chr1	175355420	175355420	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacatcgcgaaccaggatctGcgtggggccgtcaatgactg	14	11	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175355420	C	C	175355420	3	2	171	1	0	0	0	0	1	0	0	0	16461	1328	46	4	2615	4	TNR	1	175355420	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1652192	175355420	73895201	49	139829											
TNR	7143	broad.mit.edu	37	chr1	175360617	175360617	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcaaaagagaaaagtcacTgggagagaaatctgatgaga	13	4	2	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175360617	A	A	175360617	1	1	171	0	1	0	0	0	0	0	0	0	16461	1595	55	5		5	TNR	1	175360617	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	5197	175360617	73890004	50	139830											
TNR	7143	broad.mit.edu	37	chr1	175365934	175365934	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccactcgcaagtcctctGgaggggcaactaccgggagg	14	13	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175365934	C	C	175365934	3	2	171	1	0	0	0	0	1	0	0	0	16461	1348	47	4	3166	4	TNR	1	175365934	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	5317	175365934	73884687	51	139831											
PAPPA2	60676	broad.mit.edu	37	chr1	176762718	176762718	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgtgttccccattgtgTgtaatcccccccagtgaccc	9	15	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176762718	C	C	176762718	2	2	171	1	0	0	0	0	0	0	0	1	11527	1702	59	5		5	PAPPA2	1	176762718	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	1396784	176762718	72487903	52	139832											
PAPPA2	60676	broad.mit.edu	37	chr1	176762847	176762847	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccaaagacatgagtctGctgagcaacacttggagcat	11	9	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176762847	T	T	176762847	1	4	171	0	1	0	0	0	0	0	0	0	11527	1334	46	3		3	PAPPA2	1	176762847	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	129	176762847	72487774	53	139833											
FAM20B	9917	broad.mit.edu	37	chr1	179013192	179013192	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggagattgcagcccagtgGgtggttccccgggaagtgta	17	8	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179013192	A	A	179013192	4	1	171	1	0	0	0	0	0	1	0	0	5585	1241	43	4	212	4	FAM20B	1	179013192	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2250345	179013192	70237429	54	139834											
PRG4	10216	broad.mit.edu	37	chr1	186269110	186269110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgacatcattccaacaCcttctcgatcaataaaattc	3	12	3	1	rs77422143	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186269110	A	A	186269110	1	1	171	0	1	0	0	0	0	0	0	0	12587	522	18	3		3	PRG4	1	186269110	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	7255918	186269110	62981511	55	139835											
FAM5C	339479	broad.mit.edu	37	chr1	190423887	190423887	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttatcagagaggagccagTcgaaggggcttgtggcatgc	15	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190423887	C	C	190423887	3	2	171	1	0	0	0	0	1	0	0	0	5645	1667	58	5	2194	5	FAM5C	1	190423887	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	4154777	190423887	58826734	56	139836											
RGS18	64407	broad.mit.edu	37	chr1	192129574	192129574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctttcccatagaggttaGtggtactttcaccaaatact	7	10	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192129574	T	T	192129574	1	4	171	0	1	0	0	0	0	0	0	0	13409	1044	36	3		3	RGS18	1	192129574	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1705687	192129574	57121047	57	139837											
KCNT2	343450	broad.mit.edu	37	chr1	196227445	196227445	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttattttttcagctgttttAccagagtgttttgggccttt	9	6	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196227445	C	C	196227445	2	2	171	1	0	0	0	0	0	0	0	1	8162	378	14	5		5	KCNT2	1	196227445	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	4097871	196227445	53023176	58	139838											
ASPM	259266	broad.mit.edu	37	chr1	197059495	197059495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacaatcatttttcttcctCcaagaatagcctctccataa	3	12	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197059495	A	A	197059495	3	1	171	1	0	0	0	0	1	0	0	0	1060	856	30	3	793	3	ASPM	1	197059495	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	832050	197059495	52191126	59	139839											
ASPM	259266	broad.mit.edu	37	chr1	197097545	197097545	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaagagcaagattgaatAattacaaaaaaagtgttttc	7	3	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197097545	C	C	197097545	1	2	171	0	1	0	0	0	0	0	0	0	1060	377	13	5		5	ASPM	1	197097545	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	38050	197097545	52153076	60	139840											
ASPM	259266	broad.mit.edu	37	chr1	197112565	197112565	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtttcagttacagctttctCattaaaagaaacttttgaaa	5	6	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197112565	A	A	197112565	4	1	171	1	0	0	0	0	0	1	0	0	1060	835	29	3	9720	3	ASPM	1	197112565	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	15020	197112565	52138056	61	139841											
CRB1	23418	broad.mit.edu	37	chr1	197390222	197390222	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgggaattatacttgcCattgcccatttgataacctt	7	10	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197390222	T	T	197390222	3	4	171	1	0	0	0	0	1	0	0	0	3880	594	21	4	1286	4	CRB1	1	197390222	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	277657	197390222	51860399	62	139842											
KIF21B	23046	broad.mit.edu	37	chr1	200960801	200960801	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacctcctgggtcttcctcCtcaggaccatctcctgctgc	7	18	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200960801	T	T	200960801	3	4	171	1	0	0	0	0	1	0	0	0	8359	681	24	4	2508	4	KIF21B	1	200960801	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	3570579	200960801	48289820	63	139843											
KIF21B	23046	broad.mit.edu	37	chr1	200961370	200961370	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaggctgggagtgctaGggccaaaggctcctgggagg	19	9	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200961370	C	C	200961370	1	2	171	0	1	0	0	0	0	0	0	0	8359	1015	35	4		4	KIF21B	1	200961370	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	569	200961370	48289251	64	139844											
KIF21B	23046	broad.mit.edu	37	chr1	200969654	200969654	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcggctggagaagcacccaGggagtaggggctcctagccg	18	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200969654	C	C	200969654	3	2	171	1	0	0	0	0	1	0	0	0	8359	991	35	4	3421	4	KIF21B	1	200969654	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	8284	200969654	48280967	65	139845											
IGFN1	91156	broad.mit.edu	37	chr1	201187763	201187763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggacctccatcggatgCtgtctttgctcgggacccca	11	15	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201187763	A	A	201187763	3	1	171	1	0	0	0	0	1	0	0	0	7660	797	28	3	9941	3	IGFN1	1	201187763	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	218109	201187763	48062858	66	139846											
PKP1	5317	broad.mit.edu	37	chr1	201288901	201288901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccggccacccccagatcCacttctgatccagcatcaac	6	19	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201288901	T	T	201288901	1	4	171	0	1	0	0	0	0	0	0	0	12079	609	21	4		4	PKP1	1	201288901	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	101138	201288901	47961720	67	139847											
IPO9	55705	broad.mit.edu	37	chr1	201823891	201823892	+	Intron	INS	-	A	A													gagtttgaggggctggtctgINSaaatcatttatttcttatat							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201823892	A	A	201823891	6	5	171	0	1	1	1	0	0	0	0	0	7869	1305	45	0		0	IPO9	1	201823891	Intron	INS	-	TCGA-50-6593-01A-11D-1753-08	534990	201823891	47426730	68	139848											
CR2	1380	broad.mit.edu	37	chr1	207649641	207649641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatactggtggaaacataGctcgattttctcctggaatg	9	9	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207649641	T	T	207649641	3	4	171	1	0	0	0	0	1	0	0	0	3874	971	34	3	2837	3	CR2	1	207649641	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	5825750	207649641	41600980	69	139849											
PLXNA2	5362	broad.mit.edu	37	chr1	208270154	208270154	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccggacacctgcccctcCacctctgtcaggttcccaaa	6	20	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208270154	A	A	208270154	2	1	171	1	0	0	0	0	0	0	0	1	12215	581	21	2		2	PLXNA2	1	208270154	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	620513	208270154	40980467	70	139850											
TATDN3	128387	broad.mit.edu	37	chr1	212976051	212976051	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttctcccaggatttggaTgtagctttgcccattattga	8	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212976051	A	A	212976051	3	1	171	1	0	0	0	0	1	0	0	0	15712	1461	51	5	285	5	TATDN3	1	212976051	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	4705897	212976051	36274570	71	139851											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220379362	220379362	+	Intron	DEL	A	-	-													cttcattctatttaagaaatAaaaaaaaaaagttcttgaat							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220379362	-	-	220379362	6	5	171	0	1	1	0	1	0	0	0	0	13044	377	13	0		0	RAB3GAP2	1	220379362	Intron	DEL	A	TCGA-50-6593-01A-11D-1753-08	7403311	220379362	28871259	72	139852											
SUSD4	55061	broad.mit.edu	37	chr1	223465926	223465926	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagccttcaaagaaaaccccTccgctgggggtcctgaagcc	11	14	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223465926	C	C	223465926	2	2	171	1	0	0	0	0	0	0	0	1	15528	1538	54	5		5	SUSD4	1	223465926	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	3086564	223465926	25784695	73	139853											
C1orf69	200205	broad.mit.edu	37	chr1	228362874	228362874	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggtggccctgcccctggAgtccaacctggccttcatga	13	14	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228362874	T	T	228362874	3	4	171	1	0	0	0	0	1	0	0	0	2079	304	11	5	741	5	C1orf69	1	228362874	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	4896948	228362874	20887747	74	139854											
RHOU	58480	broad.mit.edu	37	chr1	228879403	228879403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcggacactcagcaacaGccaaagaagtctaaaagcag	8	11	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228879403	T	T	228879403	3	4	171	1	0	0	0	0	1	0	0	0	13454	962	34	3	703	3	RHOU	1	228879403	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	516529	228879403	20371218	75	139855											
TTC13	79573	broad.mit.edu	37	chr1	231081094	231081094	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccctggtctgtgtcaggTcatgtaggcgctatggcaat	12	9	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231081094	A	A	231081094	1	1	171	0	1	0	0	0	0	0	0	0	16806	1682	58	5		5	TTC13	1	231081094	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	2201691	231081094	18169527	76	139856											
RYR2	6262	broad.mit.edu	37	chr1	237789139	237789139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcactggcagaatgaccCaactgctgacacttaactca	8	12	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237789139	A	A	237789139	1	1	171	0	1	0	0	0	0	0	0	0	13880	609	21	2		2	RYR2	1	237789139	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	6708045	237789139	11461482	77	139857											
RYR2	6262	broad.mit.edu	37	chr1	237813179	237813179	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgattctttttcaggcAgctttgagtgctacagacat	8	9	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237813179	G	G	237813179	2	3	171	1	0	0	0	0	0	0	0	1	13880	175	7	5		5	RYR2	1	237813179	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	24040	237813179	11437442	78	139858											
RYR2	6262	broad.mit.edu	37	chr1	237921011	237921011	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttaggtgaaactggaccaAtggtagcagctactctgaaa	10	8	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237921011	T	T	237921011	3	4	171	1	0	0	0	0	1	0	0	0	13880	101	4	5	11586	5	RYR2	1	237921011	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	107832	237921011	11329610	79	139859											
ZP4	57829	broad.mit.edu	37	chr1	238050259	238050259	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccctcagcaatgctacccTgttgtatggtatatttccta	7	11	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050259	A	A	238050259	1	1	171	0	1	0	0	0	0	0	0	0	18347	1595	55	5		5	ZP4	1	238050259	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	129248	238050259	11200362	80	139860											
AHCTF1	25909	broad.mit.edu	37	chr1	247020947	247020947	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttctggttcataatttcaTtaaacttctttctaaaagta	3	7	5	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247020947	C	C	247020947	1	2	171	0	1	0	0	0	0	0	0	0	408	1508	52	5		5	AHCTF1	1	247020947	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	8970688	247020947	2229674	81	139861											
AHCTF1	25909	broad.mit.edu	37	chr1	247068777	247068777	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactgcactccagcctggaCaacagagcgagactctgtct	9	15	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247068777	G	G	247068777	1	3	171	0	1	0	0	0	0	0	0	0	408	493	17	4		4	AHCTF1	1	247068777	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	47830	247068777	2181844	82	139862											
OR2T12	127064	broad.mit.edu	37	chr1	248458341	248458341	+	Silent	SNP	G	A	A													caagccaaacgcaccaacacGggggcctcgcagaagaagtg							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458341	A	A	248458341	2	1	171	1	0	0	0	0	0	0	0	1	11113	1103	39	4		4	OR2T12	1	248458341	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	1389564	248458341	792280	83	139863	599	2									
OR2T12	127064	broad.mit.edu	37	chr1	248458344	248458344	+	Silent	SNP	G	C	C													gccaaacgcaccaacacgggGgcctcgcagaagaagtgatc							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248458344	C	C	248458344	2	2	171	1	0	0	0	0	0	0	0	1	11113	1219	43	4		4	OR2T12	1	248458344	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	3	248458344	792277	84	139864	599	2									
OR2M7	391196	broad.mit.edu	37	chr1	248487249	248487249	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgattgcaacagggaaaaCaagcattactatacagcaga	9	7	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487249	T	T	248487249	3	4	171	1	0	0	0	0	1	0	0	0	11108	478	17	4	319	4	OR2M7	1	248487249	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	28905	248487249	763372	85	139865											
OR2M7	391196	broad.mit.edu	37	chr1	248487840	248487840	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattcccaggaggaggaagtCagagttgaaggtctgattct	14	6	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487840	T	T	248487840	3	4	171	1	0	0	0	0	1	0	0	0	11108	826	29	4	910	4	OR2M7	1	248487840	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	591	248487840	762781	86	139866											
KIDINS220	57498	broad.mit.edu	37	chr2	8888001	8888001	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattaatatttgcgttacCcttttatatacttactaggc	4	7	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8888001	A	A	8888001	1	1	171	0	1	0	0	0	0	0	0	0	8341	638	22	2		2	KIDINS220	2	8888001	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08		8888001	234311372	87	139867											
ASAP2	8853	broad.mit.edu	37	chr2	9540191	9540191	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaccaacaaaggccaaccGagaggacctggtaattattt	9	10	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9540191	T	T	9540191	2	4	171	1	0	0	0	0	0	0	0	1	1015	1045	37	3		3	ASAP2	2	9540191	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	652190	9540191	233659182	88	139868											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10917755	10917755	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggatcatccaccttcccGgaccacaaggttaaggtaac	9	12	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10917755	A	A	10917755	2	1	171	1	0	0	0	0	0	0	0	1	1185	1103	39	4		4	ATP6V1C2	2	10917755	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	1377564	10917755	232281618	89	139869											
NBAS	51594	broad.mit.edu	37	chr2	15427279	15427279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttgtgccagagaaatagCaatgctgtagacgctttcct	10	9	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15427279	A	A	15427279	3	1	171	1	0	0	0	0	1	0	0	0	10280	710	25	3	2103	3	NBAS	2	15427279	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	4509524	15427279	227772094	90	139870											
OTOF	9381	broad.mit.edu	37	chr2	26683600	26683600	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgtcagtaaatgcagctCagcctccaccttgccctgca	8	15	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26683600	A	A	26683600	4	1	171	1	0	0	0	0	0	1	0	0	11397	835	29	3	458	3	OTOF	2	26683600	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	11256321	26683600	216515773	91	139871											
AGBL5	60509	broad.mit.edu	37	chr2	27292958	27292958	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctctctcttttctgttgcAggctgcctcaggccaggccc	9	16	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27292958	T	T	27292958	5	4	171	1	0	0	0	0	0	0	1	0	378	202	7	5	2607	5	AGBL5	2	27292958	Splice_Site	SNP	A	TCGA-50-6593-01A-11D-1753-08	609358	27292958	215906415	92	139872											
GALNT14	79623	broad.mit.edu	37	chr2	31178519	31178519	+	Frame_Shift_Del	DEL	C	-	-													caacagaggctggagccagtCcctgttcacctcacagtggc							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31178519	-	-	31178519	7	5	171	1	0	1	0	1	0	0	0	0	6274	855	30	0	1079	0	GALNT14	2	31178519	Frame_Shift_Del	DEL	C	TCGA-50-6593-01A-11D-1753-08	3885561	31178519	212020854	93	139873											
XDH	7498	broad.mit.edu	37	chr2	31611101	31611101	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaactcacttactgagtggtCtttcttctggttcatgcagc	9	10	5	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31611101	A	A	31611101	3	1	171	1	0	0	0	0	1	0	0	0	17553	913	32	3	3565	3	XDH	2	31611101	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	432582	31611101	211588272	94	139874											
HEATR5B	54497	broad.mit.edu	37	chr2	37227729	37227729	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttaaaactgataggttacCtggttgagaatattccagga	10	5	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37227729	A	A	37227729	4	1	171	1	0	0	0	0	0	1	0	0	7099	695	24	2	686	2	HEATR5B	2	37227729	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	5616628	37227729	205971644	95	139875											
PKDCC	91461	broad.mit.edu	37	chr2	42284449	42284449	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagctgcctcctttcagtGttcaacctggctgaggctgt	13	11	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42284449	T	T	42284449	2	4	171	1	0	0	0	0	0	0	0	1	12064	1364	48	3		3	PKDCC	2	42284449	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	5056720	42284449	200914924	96	139876											
MTA3	57504	broad.mit.edu	37	chr2	42883392	42883392	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagttaaagtttgggatccAaatagcccacttacggatcg	10	8	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42883392	T	T	42883392	2	4	171	1	0	0	0	0	0	0	0	1	10004	117	5	5		5	MTA3	2	42883392	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	598943	42883392	200315981	97	139877											
FBXO11	80204	broad.mit.edu	37	chr2	48066010	48066010	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacttaccacaaaattggaTcattagcaagttcactgaag	6	8	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48066010	A	A	48066010	3	1	171	1	0	0	0	0	1	0	0	0	5784	1435	50	5	2378	5	FBXO11	2	48066010	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	5182618	48066010	195133363	98	139878											
NRXN1	9378	broad.mit.edu	37	chr2	50883582	50883582	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaagttctagaagtatcaaGtttctagattcttttcagtt	6	5	5	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50883582	A	A	50883582	1	1	171	0	1	0	0	0	0	0	0	0	10760	1044	36	4		4	NRXN1	2	50883582	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2817572	50883582	192315791	99	139879											
PNPT1	87178	broad.mit.edu	37	chr2	55894127	55894127	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctttttatataaattaccTgtgtttgtcctctttgaaat	5	6	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55894127	A	A	55894127	3	1	171	1	0	0	0	0	1	0	0	0	12268	1594	55	5	1240	5	PNPT1	2	55894127	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	5010545	55894127	187305246	100	139880											
DYSF	8291	broad.mit.edu	37	chr2	71839888	71839888	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgctccctggagagcttcCtgtgtgacccctactcggcg	11	16	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71839888	T	T	71839888	2	4	171	1	0	0	0	0	0	0	0	1	4899	680	24	4		4	DYSF	2	71839888	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	15945761	71839888	171359485	101	139881											
REG3A	5068	broad.mit.edu	37	chr2	79384873	79384873	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggaatggccattgcagctCttcttgcatggccccttagc	11	12	2	0	rs146788331	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79384873	G	G	79384873	1	3	171	0	1	0	0	0	0	0	0	0	13320	928	32	4		4	REG3A	2	79384873	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	7544985	79384873	163814500	102	139882											
DNAH6	1768	broad.mit.edu	37	chr2	84775457	84775457	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtttcattaatacaccacAtgagttgcccacttatggag	7	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84775457	G	G	84775457	3	3	171	1	0	0	0	0	1	0	0	0	4645	217	8	5	1258	5	DNAH6	2	84775457	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	5390584	84775457	158423916	103	139883											
RMND5A	64795	broad.mit.edu	37	chr2	87128071	87128071	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaggtaagaaaaggactaGgtgctgccaaaaagttaaca	11	6	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87128071	T	T	87128071	1	4	171	0	1	0	0	0	0	0	0	0	13508	1015	35	2		2	RMND5A	2	87128071	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2352614	87128071	156071302	104	139884											
PROM2	150696	broad.mit.edu	37	chr2	95953996	95953996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacctgccagcccctctccgGagccctggacaacagccgtg	10	19	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95953996	T	T	95953996	3	4	171	1	0	0	0	0	1	0	0	0	12662	1174	41	3	2364	3	PROM2	2	95953996	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	8825925	95953996	147245377	105	139885											
SNRNP200	23020	broad.mit.edu	37	chr2	96950908	96950908	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattcacatgacacagcgcCacgtcatacctgctctgcca	6	15	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96950908	A	A	96950908	1	1	171	0	1	0	0	0	0	0	0	0	14966	609	21	2		2	SNRNP200	2	96950908	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	996912	96950908	146248465	106	139886											
LMAN2L	81562	broad.mit.edu	37	chr2	97400113	97400113	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaaaaatcaggctgtcaCacccacacaagagtaacaca	6	12	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97400113	A	A	97400113	1	1	171	0	1	0	0	0	0	0	0	0	8913	493	17	3		3	LMAN2L	2	97400113	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	449205	97400113	145799260	107	139887											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105912807	105912807	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttctgtgaccagttaattAcaaacctgaaatttttcctt	4	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105912807	G	G	105912807	1	3	171	0	1	0	0	0	0	0	0	0	15947	406	14	5		5	TGFBRAP1	2	105912807	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	8512694	105912807	137286566	108	139888											
IL1F7	27178	broad.mit.edu	37	chr2	113674893	113674893	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcctcctgctaggtgggCtcaactccatgctataccat	9	13	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113674893	T	T	113674893	1	4	171	0	1	0	0	0	0	0	0	0	7725	812	28	4		4	IL1F7	2	113674893	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	7762086	113674893	129524480	109	139889											
IL1F6	27179	broad.mit.edu	37	chr2	113764288	113764288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgatgtgtgctaaagtcGgggaccagcccacactgcag	13	12	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113764288	T	T	113764288	3	4	171	1	0	0	0	0	1	0	0	0	7724	1116	39	1	248	1	IL1F6	2	113764288	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	89395	113764288	129435085	110	139890											
SMPD4	55627	broad.mit.edu	37	chr2	130910820	130910820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagcctgatggcctctgCtcacaagggaggagggagct	17	9	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130910820	A	A	130910820	1	1	171	0	1	0	0	0	0	0	0	0	14921	812	28	3		3	SMPD4	2	130910820	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	17146532	130910820	112288553	111	139891											
PLEKHB2	55041	broad.mit.edu	37	chr2	131935309	131935309	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccttcaggtccttgcacttgGacttagatgtgagctgactc	10	11	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131935309	C	C	131935309	1	2	171	0	1	0	0	0	0	0	0	0	12160	1189	41	4		4	PLEKHB2	2	131935309	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1024489	131935309	111264064	112	139892											
PLEKHB2	55041	broad.mit.edu	37	chr2	132109724	132109724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggaagttccctcctaGctcgccctcatctggagggg	14	12	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132109724	T	T	132109724	1	4	171	0	1	0	0	0	0	0	0	0	12160	986	34	3		3	PLEKHB2	2	132109724	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	174415	132109724	111089649	113	139893											
THSD7B	80731	broad.mit.edu	37	chr2	138163308	138163308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagactgcaccttcactGcttggtccaagtttacgccc	9	13	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138163308	T	T	138163308	3	4	171	1	0	0	0	0	1	0	0	0	16003	1319	46	3	2579	3	THSD7B	2	138163308	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	6053584	138163308	105036065	114	139894											
LRP1B	53353	broad.mit.edu	37	chr2	140995720	140995720	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattatcttaagacatactaCctttgttgggtctatcataa	5	8	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140995720	G	G	140995720	5	3	171	1	0	0	0	0	0	0	1	0	9042	521	18	4	250	4	LRP1B	2	140995720	Splice_Site	SNP	C	TCGA-50-6593-01A-11D-1753-08	2832412	140995720	102203653	115	139895											
LRP1B	53353	broad.mit.edu	37	chr2	141641581	141641581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccacaaccacttcaatgGcactgacacctacaaaagaa	5	14	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141641581	T	T	141641581	3	4	171	1	0	0	0	0	1	0	0	0	9042	1203	42	3	10093	3	LRP1B	2	141641581	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	645861	141641581	101557792	116	139896											
RND3	390	broad.mit.edu	37	chr2	151331328	151331328	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgagcttcccaacaaacCccacgtttctatttatacat	3	13	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151331328	A	A	151331328	1	1	171	0	1	0	0	0	0	0	0	0	13532	638	22	2		2	RND3	2	151331328	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	9689747	151331328	91868045	117	139897											
SLC4A10	57282	broad.mit.edu	37	chr2	162719630	162719630	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtctctgacatatcaaagCgcttctaaatcttttaaaac	5	9	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162719630	G	G	162719630	1	3	171	0	1	0	0	0	0	0	0	0	14765	783	27	4		4	SLC4A10	2	162719630	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	11388302	162719630	80479743	118	139898											
GCA	25801	broad.mit.edu	37	chr2	163212867	163212867	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcagttttttaatgttttAttttgaaactggagattgtc	9	3	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163212867	G	G	163212867	1	3	171	0	1	0	0	0	0	0	0	0	6345	464	16	5		5	GCA	2	163212867	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	493237	163212867	79986506	119	139899											
SCN2A	6326	broad.mit.edu	37	chr2	166164446	166164446	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagactggacaaagaatgtgGagtaagtataaatatttttc	9	4	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166164446	C	C	166164446	3	2	171	1	0	0	0	0	1	0	0	0	14029	1188	41	4	485	4	SCN2A	2	166164446	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2951579	166164446	77034927	120	139900											
CSRNP3	80034	broad.mit.edu	37	chr2	166533101	166533101	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacgtgcacctgcagcctgGctggcattaagtgccaggta	12	12	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166533101	A	A	166533101	3	1	171	1	0	0	0	0	1	0	0	0	3999	1203	42	4	698	4	CSRNP3	2	166533101	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	368655	166533101	76666272	121	139901											
CSRNP3	80034	broad.mit.edu	37	chr2	166535484	166535484	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactgagccccaggctgcaGtgctgcacctgcagtcggct	12	14	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166535484	A	A	166535484	3	1	171	1	0	0	0	0	1	0	0	0	3999	1029	36	4	993	4	CSRNP3	2	166535484	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2383	166535484	76663889	122	139902											
XIRP2	129446	broad.mit.edu	37	chr2	167759983	167759983	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatattgcaggacaacctGgacccatccatgttcccaat	7	12	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167759983	T	T	167759983	1	4	171	0	1	0	0	0	0	0	0	0	17557	1363	47	2		2	XIRP2	2	167759983	5'UTR	SNP	G	TCGA-50-6593-01A-11D-1753-08	1224499	167759983	75439390	123	139903											
XIRP2	129446	broad.mit.edu	37	chr2	167760502	167760502	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccccccgccagtattctaGacagatgtcctgaagccgat	8	14	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167760502	C	C	167760502	1	2	171	0	1	0	0	0	0	0	0	0	17557	957	33	4		4	XIRP2	2	167760502	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	519	167760502	75438871	124	139904											
LRP2	4036	broad.mit.edu	37	chr2	170099499	170099499	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccgagttgtcactgcaatCaaaaacaccatcacaacgat	5	12	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170099499	A	A	170099499	3	1	171	1	0	0	0	0	1	0	0	0	9043	826	29	3	10557	3	LRP2	2	170099499	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2338997	170099499	73099874	125	139905											
LRP2	4036	broad.mit.edu	37	chr2	170113562	170113562	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttccttacaccatcatatCacccaacctgcctcattatg	3	15	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170113562	G	G	170113562	1	3	171	0	1	0	0	0	0	0	0	0	9043	841	29	4		4	LRP2	2	170113562	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	14063	170113562	73085811	126	139906											
LRP2	4036	broad.mit.edu	37	chr2	170127535	170127535	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattccccgaaactggaacCatgacatcttcctgggtaga	10	11	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170127535	T	T	170127535	3	4	171	1	0	0	0	0	1	0	0	0	9043	594	21	4	12024	4	LRP2	2	170127535	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	13973	170127535	73071838	127	139907											
FASTKD1	79675	broad.mit.edu	37	chr2	170387292	170387292	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttttcagaaacaagattgCatctttataaactaacaaaa	4	7	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170387292	T	T	170387292	1	4	171	0	1	0	0	0	0	0	0	0	5742	725	25	4		4	FASTKD1	2	170387292	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	259757	170387292	72812081	128	139908											
HOXD10	3236	broad.mit.edu	37	chr2	176981647	176981647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggagtgacagtttttattCcagcagcgccagcatgtaca	10	10	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176981647	A	A	176981647	3	1	171	1	0	0	0	0	1	0	0	0	7386	855	30	3	88	3	HOXD10	2	176981647	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	6594355	176981647	66217726	129	139909											
OSBPL6	114880	broad.mit.edu	37	chr2	179209008	179209008	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctcttctcccattcaccGtcaggaagggccacccgcga	8	19	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179209008	T	T	179209008	1	4	171	0	1	0	0	0	0	0	0	0	11375	1160	40	3		3	OSBPL6	2	179209008	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2227361	179209008	63990365	130	139910											
OSBPL6	114880	broad.mit.edu	37	chr2	179238620	179238620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctgtcttctgcaggctGgtgagcaaatccatgtcagt	11	10	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179238620	T	T	179238620	3	4	171	1	0	0	0	0	1	0	0	0	11375	1348	47	2	1571	2	OSBPL6	2	179238620	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	29612	179238620	63960753	131	139911											
TTN	7273	broad.mit.edu	37	chr2	179449532	179449532	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaagtttttgtgactgaAgctagagccgtgacccagtc	12	9	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179449532	C	C	179449532	2	2	171	1	0	0	0	0	0	0	0	1	16861	59	3	5		5	TTN	2	179449532	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	210912	179449532	63749841	132	139912											
TTN	7273	broad.mit.edu	37	chr2	179582535	179582535	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaggtggaagtttgcGcgctgtaaagaagttacaga	13	4	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179582535	C	C	179582535	3	2	171	1	0	0	0	0	1	0	0	0	16861	1087	38	4	79567	4	TTN	2	179582535	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	133003	179582535	63616838	133	139913											
SSFA2	6744	broad.mit.edu	37	chr2	182780208	182780208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaacagtccacctgtagtcCaggggatcatatcattgaaa	8	9	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182780208	T	T	182780208	3	4	171	1	0	0	0	0	1	0	0	0	15301	594	21	4	1883	4	SSFA2	2	182780208	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	3197673	182780208	60419165	134	139914											
PDE1A	5136	broad.mit.edu	37	chr2	183291392	183291392	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaacttcttcctggaaaccActccagaaactccagagagg	7	12	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183291392	G	G	183291392	1	3	171	0	1	0	0	0	0	0	0	0	11727	174	6	5		5	PDE1A	2	183291392	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	511184	183291392	59907981	135	139915											
COL3A1	1281	broad.mit.edu	37	chr2	189870978	189870978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccgagatggatctcctgGtggcaaggtataataaacac	12	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189870978	T	T	189870978	3	4	171	1	0	0	0	0	1	0	0	0	3720	1261	44	3	3252	3	COL3A1	2	189870978	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	6579586	189870978	53328395	136	139916											
COL5A2	1290	broad.mit.edu	37	chr2	189923181	189923181	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatcaggaccatgtcctcCagccattcccttctcaccag	6	18	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189923181	G	G	189923181	3	3	171	1	0	0	0	0	1	0	0	0	3729	603	21	4	2384	4	COL5A2	2	189923181	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	52203	189923181	53276192	137	139917											
MFSD6	54842	broad.mit.edu	37	chr2	191301129	191301129	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccttttggggtgtagttgCagaccgctttaaaaaaggca	11	9	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191301129	T	T	191301129	3	4	171	1	0	0	0	0	1	0	0	0	9628	710	25	4	376	4	MFSD6	2	191301129	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1377948	191301129	51898244	138	139918											
DNAH7	56171	broad.mit.edu	37	chr2	196825191	196825191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagagaatattctttgctaGctgcttcactaataccttca	5	10	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196825191	T	T	196825191	3	4	171	1	0	0	0	0	1	0	0	0	4646	971	34	3	9582	3	DNAH7	2	196825191	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	5524062	196825191	46374182	139	139919											
C2orf66	401027	broad.mit.edu	37	chr2	197674027	197674027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcccaagcagcaccagggCaacacatagtagcaggagag	12	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197674027	A	A	197674027	3	1	171	1	0	0	0	0	1	0	0	0	2207	710	25	3	276	3	C2orf66	2	197674027	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	848836	197674027	45525346	140	139920											
C2orf47	79568	broad.mit.edu	37	chr2	200824646	200824646	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgaaatgatccataattgtCcagataagctaaactagtgg	8	6	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200824646	T	T	200824646	1	4	171	0	1	0	0	0	0	0	0	0	2191	870	30	4		4	C2orf47	2	200824646	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3150619	200824646	42374727	141	139921											
CDK15	65061	broad.mit.edu	37	chr2	202671456	202671456	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccattgttcagagggaggCgaggcacacagctgtcggag	15	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202671456	A	A	202671456	2	1	171	1	0	0	0	0	0	0	0	1	3161	783	27	3		3	CDK15	2	202671456	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	1846810	202671456	40527917	142	139922											
WDR12	55759	broad.mit.edu	37	chr2	203748851	203748851	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagaaattcctttttttgTacatctccagagagatgaga	8	8	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203748851	A	A	203748851	1	1	171	0	1	0	0	0	0	0	0	0	17401	1653	57	5		5	WDR12	2	203748851	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	1077395	203748851	39450522	143	139923											
PARD3B	117583	broad.mit.edu	37	chr2	205978327	205978327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtttttctcattccagaaGctcatgctaatgaaaaccct	5	10	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205978327	T	T	205978327	1	4	171	0	1	0	0	0	0	0	0	0	11538	986	34	3		3	PARD3B	2	205978327	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2229476	205978327	37221046	144	139924											
PARD3B	117583	broad.mit.edu	37	chr2	206364739	206364739	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaagagcaaggccatctgAgtatgacctactctgggtaa	12	8	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206364739	T	T	206364739	3	4	171	1	0	0	0	0	1	0	0	0	11538	304	11	5	3246	5	PARD3B	2	206364739	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	386412	206364739	36834634	145	139925											
ADAM23	8745	broad.mit.edu	37	chr2	207452814	207452814	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtgtgctcctgtccccaGggccgctgctacaatggcga	12	14	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207452814	T	T	207452814	5	4	171	1	0	0	0	0	0	0	1	0	245	1014	35	2	1866	2	ADAM23	2	207452814	Splice_Site	SNP	G	TCGA-50-6593-01A-11D-1753-08	1088075	207452814	35746559	146	139926											
CPS1	1373	broad.mit.edu	37	chr2	211539587	211539587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcataaatgaagagcatGtatatctagaaagtgaattt	8	3	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211539587	T	T	211539587	1	4	171	0	1	0	0	0	0	0	0	0	3855	1392	48	3		3	CPS1	2	211539587	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	4086773	211539587	31659786	147	139927											
ACCN4	55515	broad.mit.edu	37	chr2	220396524	220396524	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaccttcaacgcggacccGcggagctcgctgcccagccg	11	18	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220396524	T	T	220396524	2	4	171	1	0	0	0	0	0	0	0	1	131	1074	38	3		3	ACCN4	2	220396524	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	8856937	220396524	22802849	148	139928											
DOCK10	55619	broad.mit.edu	37	chr2	225635387	225635387	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagaagaaaattggtgaagGatgatctaccttctgcatgg	12	5	2	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225635387	T	T	225635387	1	4	171	0	1	0	0	0	0	0	0	0	4725	1189	41	3		3	DOCK10	2	225635387	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	5238863	225635387	17563986	149	139929											
C3orf32	51066	broad.mit.edu	37	chr3	8675687	8675687	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acggggcaggttttcctagaGaacagccaaaaacactttag	10	9	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8675687	C	C	8675687	1	2	171	0	1	0	0	0	0	0	0	0	2244	957	33	4		4	C3orf32	3	8675687	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08		8675687	189346743	150	139930											
SRGAP3	9901	broad.mit.edu	37	chr3	9032338	9032338	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcgctcccgaacgtcGccatcctccgcttctcaggg	10	18	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9032338	A	A	9032338	3	1	171	1	0	0	0	0	1	0	0	0	15265	1087	38	4	563	4	SRGAP3	3	9032338	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	356651	9032338	188990092	151	139931											
ATP2B2	491	broad.mit.edu	37	chr3	10444022	10444022	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctctgccccaccctgggcCgtcgcacatcctgaaagacc	8	19	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10444022	G	G	10444022	2	3	171	1	0	0	0	0	0	0	0	1	1144	639	23	4		4	ATP2B2	3	10444022	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	1411684	10444022	187578408	152	139932											
COLQ	8292	broad.mit.edu	37	chr3	15520396	15520396	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcagtgaccactgaagtgCattgctgttcccccctccct	7	15	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15520396	T	T	15520396	1	4	171	0	1	0	0	0	0	0	0	0	3745	725	25	4		4	COLQ	3	15520396	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	5076374	15520396	182502034	153	139933											
PDCD6IP	10015	broad.mit.edu	37	chr3	33877528	33877528	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttgttgttgacgtttttCtttttagcatgcagcagaac	8	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33877528	T	T	33877528	1	4	171	0	1	0	0	0	0	0	0	0	11718	928	32	4		4	PDCD6IP	3	33877528	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	18357132	33877528	164144902	154	139934											
MYRIP	25924	broad.mit.edu	37	chr3	40204346	40204346	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactgggaagttggagtaaTagaaacacctacaggtacag	11	7	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40204346	C	C	40204346	1	2	171	0	1	0	0	0	0	0	0	0	10194	1421	49	5		5	MYRIP	3	40204346	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	6326818	40204346	157818084	155	139935											
ZNF662	389114	broad.mit.edu	37	chr3	42949613	42949613	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtacagggatgtgatgctgGagaattatggggctgtggct	17	4	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42949613	A	A	42949613	3	1	171	1	0	0	0	0	1	0	0	0	18198	1175	41	4	196	4	ZNF662	3	42949613	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2745267	42949613	155072817	156	139936											
KIF15	56992	broad.mit.edu	37	chr3	44846493	44846493	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcagaaaaaaaaaaaaaaaGactgagattgttttcttatt	5	4	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44846493	A	A	44846493	1	1	171	0	1	0	0	0	0	0	0	0	8347	957	33	4		4	KIF15	3	44846493	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1896880	44846493	153175937	157	139937											
COL7A1	1294	broad.mit.edu	37	chr3	48613018	48613018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggctgtacagctacaccCcactccacggggcacaaccc	10	17	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48613018	A	A	48613018	1	1	171	0	1	0	0	0	0	0	0	0	3736	638	22	2		2	COL7A1	3	48613018	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3766525	48613018	149409412	158	139938											
UQCRC1	7384	broad.mit.edu	37	chr3	48646610	48646610	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccgtgcaagtgggctgAgaggactgctcggaggccac	15	12	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48646610	G	G	48646610	2	3	171	1	0	0	0	0	0	0	0	1	17145	291	11	5		5	UQCRC1	3	48646610	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	33592	48646610	149375820	159	139939											
BSN	8927	broad.mit.edu	37	chr3	49699759	49699759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatggcccacagccgggtacGaccccccatgcggagccagg	13	16	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49699759	T	T	49699759	3	4	171	1	0	0	0	0	1	0	0	0	1539	1058	37	3	10503	3	BSN	3	49699759	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1053149	49699759	148322671	160	139940											
RNF123	63891	broad.mit.edu	37	chr3	49743572	49743572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagatgaagtctggttctGggggctgccctggcagttct	14	10	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49743572	T	T	49743572	1	4	171	0	1	0	0	0	0	0	0	0	13544	1363	47	2		2	RNF123	3	49743572	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	43813	49743572	148278858	161	139941											
IQCF2	389123	broad.mit.edu	37	chr3	51897392	51897392	+	3'UTR	DEL	G	-	-													atcatcaactcctaagggctGgcaagaagggcactgtgtct							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51897392	-	-	51897392	6	5	171	0	1	1	0	1	0	0	0	0	7878	1363	47	0		0	IQCF2	3	51897392	3'UTR	DEL	G	TCGA-50-6593-01A-11D-1753-08	2153820	51897392	146125038	162	139942											
CNTN3	5067	broad.mit.edu	37	chr3	74350822	74350822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacggtttgccaacccaCggagaaaggtgtccgagcct	13	11	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74350822	A	A	74350822	3	1	171	1	0	0	0	0	1	0	0	0	3674	536	19	3	1201	3	CNTN3	3	74350822	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	22453430	74350822	123671608	163	139943											
CNTN3	5067	broad.mit.edu	37	chr3	74350861	74350861	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggatagaataggatataaCtgggctatggttgtctttac	11	5	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74350861	G	G	74350861	3	3	171	1	0	0	0	0	1	0	0	0	3674	565	20	4	1240	4	CNTN3	3	74350861	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	39	74350861	123671569	164	139944											
CASR	846	broad.mit.edu	37	chr3	122003983	122003983	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtagtgtccagttcacagaGctttgtcatcagtggtggag	13	7	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122003983	A	A	122003983	3	1	171	1	0	0	0	0	1	0	0	0	2708	971	34	4	3234	4	CASR	3	122003983	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	47653122	122003983	76018447	165	139945											
PLCH1	23007	broad.mit.edu	37	chr3	155199813	155199813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggatcagctattacatcCtccagggtcaaatcagggga	12	9	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155199813	A	A	155199813	3	1	171	1	0	0	0	0	1	0	0	0	12132	680	24	2	1059	2	PLCH1	3	155199813	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	33195830	155199813	42822617	166	139946											
ARL14	80117	broad.mit.edu	37	chr3	160395577	160395577	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaagaagctttgcagtgAccggaactggtatgtgcaac	13	7	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160395577	G	G	160395577	3	3	171	1	0	0	0	0	1	0	0	0	932	275	10	5	445	5	ARL14	3	160395577	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	5195764	160395577	37626853	167	139947											
SI	6476	broad.mit.edu	37	chr3	164766917	164766917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaaattgcacttactgCtctgtggctatagccatgct	9	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164766917	A	A	164766917	3	1	171	1	0	0	0	0	1	0	0	0	14410	796	28	3	3906	3	SI	3	164766917	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	4371340	164766917	33255513	168	139948											
WDR49	151790	broad.mit.edu	37	chr3	167217936	167217936	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtatgatggctgagaaCttacttttaaaaagtgacgg	12	4	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167217936	G	G	167217936	1	3	171	0	1	0	0	0	0	0	0	0	17429	580	20	4		4	WDR49	3	167217936	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2451019	167217936	30804494	169	139949											
SLC7A14	57709	broad.mit.edu	37	chr3	170214357	170214357	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtaccaggagctgatgaaCgtcaaactggccctggacat	12	10	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170214357	T	T	170214357	1	4	171	0	1	0	0	0	0	0	0	0	14810	551	19	4		4	SLC7A14	3	170214357	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2996421	170214357	27808073	170	139950											
SLC7A14	57709	broad.mit.edu	37	chr3	170214499	170214499	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtggtctgagttccgcCtatgggggcctcacaagccc	14	13	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170214499	T	T	170214499	1	4	171	0	1	0	0	0	0	0	0	0	14810	696	24	4		4	SLC7A14	3	170214499	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	142	170214499	27807931	171	139951											
SLC2A2	6514	broad.mit.edu	37	chr3	170736221	170736221	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggccaggatggccttgtgtCtcccacgtggacacccttta	11	13	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170736221	T	T	170736221	1	4	171	0	1	0	0	0	0	0	0	0	14658	928	32	4		4	SLC2A2	3	170736221	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	521722	170736221	27286209	172	139952											
PEX5L	51555	broad.mit.edu	37	chr3	179537810	179537810	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggatttaagaacatgccAcatcatctgtgtttttcttc	7	8	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179537810	G	G	179537810	1	3	171	0	1	0	0	0	0	0	0	0	11844	174	6	5		5	PEX5L	3	179537810	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	8801589	179537810	18484620	173	139953											
LIPH	200879	broad.mit.edu	37	chr3	185232351	185232351	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtaagagagagatactacCaactgatcccctgaagggct	11	10	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185232351	T	T	185232351	1	4	171	0	1	0	0	0	0	0	0	0	8897	609	21	4		4	LIPH	3	185232351	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	5694541	185232351	12790079	174	139954											
OPA1	4976	broad.mit.edu	37	chr3	193333443	193333443	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgcagagcatctgattgaCacactttcttgtcttttaga	7	9	3	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193333443	T	T	193333443	1	4	171	0	1	0	0	0	0	0	0	0	10965	493	17	4		4	OPA1	3	193333443	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	8101092	193333443	4688987	175	139955											
ZNF721	170960	broad.mit.edu	37	chr4	437409	437409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatattaaaggctttacCacattctaaacatttaaagg	6	6	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	437409	A	A	437409	3	1	171	1	0	0	0	0	1	0	0	0	18250	594	21	2	1928	2	ZNF721	4	437409	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08		437409	190716867	176	139956											
FAM193A	8603	broad.mit.edu	37	chr4	2691508	2691508	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgccgtagtctcccgtGgaagccctggcgcagctgta	12	13	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2691508	T	T	2691508	1	4	171	0	1	0	0	0	0	0	0	0	5571	1363	47	2		2	FAM193A	4	2691508	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2254099	2691508	188462768	177	139957											
SH3BP2	6452	broad.mit.edu	37	chr4	2831140	2831140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggttgcactcctggttgGcctggctgaccactgccagc	13	13	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2831140	T	T	2831140	1	4	171	0	1	0	0	0	0	0	0	0	14358	1218	42	3		3	SH3BP2	4	2831140	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	139632	2831140	188323136	178	139958											
STK32B	55351	broad.mit.edu	37	chr4	5399976	5399976	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggatgaacacggtaaGcctgctactaatcctttaca	8	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5399976	T	T	5399976	1	4	171	0	1	0	0	0	0	0	0	0	15416	986	34	3		3	STK32B	4	5399976	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2568836	5399976	185754300	179	139959											
CPZ	8532	broad.mit.edu	37	chr4	8616159	8616159	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctgtgtgaagttcccCcccgaggaggccctgtacat	13	13	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8616159	T	T	8616159	2	4	171	1	0	0	0	0	0	0	0	1	3871	610	22	4		4	CPZ	4	8616159	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	3216183	8616159	182538117	180	139960											
BOD1L	259282	broad.mit.edu	37	chr4	13588025	13588025	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtggaaaaaatacctttgTgtcatgtggctccgtttcag	10	7	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13588025	A	A	13588025	3	1	171	1	0	0	0	0	1	0	0	0	1489	1696	59	5	767	5	BOD1L	4	13588025	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	4971866	13588025	177566251	181	139961											
CD38	952	broad.mit.edu	37	chr4	15839701	15839701	+	Intron	DEL	T	-	-													tgcatgatgaatggtgggcaTttttttttttaagtttgcag					rs113665761		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15839701	-	-	15839701	6	5	171	0	1	1	0	1	0	0	0	0	3039	1508	52	0		0	CD38	4	15839701	Intron	DEL	T	TCGA-50-6593-01A-11D-1753-08	2251676	15839701	175314575	182	139962											
SLIT2	9353	broad.mit.edu	37	chr4	20555632	20555632	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttcttttaagaattactAtattaagtaaaaaagaaaaa	3	2	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20555632	G	G	20555632	1	3	171	0	1	0	0	0	0	0	0	0	14854	464	16	5		5	SLIT2	4	20555632	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	4715931	20555632	170598644	183	139963											
SLIT2	9353	broad.mit.edu	37	chr4	20597397	20597397	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagacaacaagtgtaaaaAcggagcccactgcacagatg	9	11	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20597397	C	C	20597397	3	2	171	1	0	0	0	0	1	0	0	0	14854	43	2	5	3382	5	SLIT2	4	20597397	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	41765	20597397	170556879	184	139964											
PPARGC1A	10891	broad.mit.edu	37	chr4	23814445	23814445	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatactctctgcgatattcTtccctcttcagcctctcgtg	5	15	6	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23814445	G	G	23814445	3	3	171	1	0	0	0	0	1	0	0	0	12396	1606	56	5	468	5	PPARGC1A	4	23814445	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	3217048	23814445	167339831	185	139965											
PCDH7	5099	broad.mit.edu	37	chr4	30725632	30725632	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgcacatcccactcacccAggatatagctggtgacccaa	7	14	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30725632	T	T	30725632	3	4	171	1	0	0	0	0	1	0	0	0	11610	188	7	5	2590	5	PCDH7	4	30725632	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	6911187	30725632	160428644	186	139966											
ATP10D	57205	broad.mit.edu	37	chr4	47517444	47517444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactttgcctctgacatcaGtccttgaagtaacttcttaa	6	10	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47517444	T	T	47517444	1	4	171	0	1	0	0	0	0	0	0	0	1122	1044	36	3		3	ATP10D	4	47517444	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	16791812	47517444	143636832	187	139967											
SLAIN2	57606	broad.mit.edu	37	chr4	48381723	48381723	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggtaacttgaaaagctcAgacagaaatcctccactcag	7	10	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48381723	G	G	48381723	2	3	171	1	0	0	0	0	0	0	0	1	14479	175	7	5		5	SLAIN2	4	48381723	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	864279	48381723	142772553	188	139968											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68934421	68934421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaccctatgagctggaGgctggcctgccatggccatt	13	13	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68934421	T	T	68934421	3	4	171	1	0	0	0	0	1	0	0	0	16366	1000	35	2	662	2	TMPRSS11F	4	68934421	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	20552698	68934421	122219855	189	139969											
YTHDC1	91746	broad.mit.edu	37	chr4	69197847	69197847	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggcaagagacacattctCatggttgttactctttatga	8	7	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69197847	A	A	69197847	4	1	171	1	0	0	0	0	0	1	0	0	17623	835	29	3	1131	3	YTHDC1	4	69197847	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	263426	69197847	121956429	190	139970											
UGT2B28	54490	broad.mit.edu	37	chr4	70160247	70160247	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctttatttttatccttcaGatataaagagaatgttatga	5	4	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70160247	C	C	70160247	5	2	171	1	0	0	0	0	0	0	1	0	17086	956	33	4	1332	4	UGT2B28	4	70160247	Splice_Site	SNP	G	TCGA-50-6593-01A-11D-1753-08	962400	70160247	120994029	191	139971											
MUC7	4589	broad.mit.edu	37	chr4	71347269	71347269	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caccttctgcaactaccctaGacccatcatccgcctcagct	4	19	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71347269	T	T	71347269	3	4	171	1	0	0	0	0	1	0	0	0	10075	942	33	3	814	3	MUC7	4	71347269	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1187022	71347269	119807007	192	139972											
CCDC158	339965	broad.mit.edu	37	chr4	77305770	77305770	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttttgtttgcaaatcaaTgactgactgcctcaaataaa	6	7	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77305770	C	C	77305770	3	2	171	1	0	0	0	0	1	0	0	0	2817	1464	51	5	3088	5	CCDC158	4	77305770	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	5958501	77305770	113848506	193	139973											
FRAS1	80144	broad.mit.edu	37	chr4	79373507	79373507	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggaacatgcagcatcaccAggtaagtctatcatctcttg	8	10	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79373507	T	T	79373507	2	4	171	1	0	0	0	0	0	0	0	1	6102	202	7	5		5	FRAS1	4	79373507	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	2067737	79373507	111780769	194	139974											
WDFY3	23001	broad.mit.edu	37	chr4	85660237	85660237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtgccatgtggtcatgCgggcttctgcttccagtcca	11	11	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85660237	A	A	85660237	3	1	171	1	0	0	0	0	1	0	0	0	17397	768	27	3	4196	3	WDFY3	4	85660237	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	6286730	85660237	105494039	195	139975											
MEPE	56955	broad.mit.edu	37	chr4	88766342	88766342	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatcagtaacaaagagaatActcacaatggcctgaggatg	10	7	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88766342	T	T	88766342	3	4	171	1	0	0	0	0	1	0	0	0	9571	391	14	5	332	5	MEPE	4	88766342	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	3106105	88766342	102387934	196	139976											
PPM1K	152926	broad.mit.edu	37	chr4	89189557	89189557	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccaaggagggcagatcacGaggtcaggagatcgagacca	16	9	2	3	rs142621223	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89189557	A	A	89189557	1	1	171	0	1	0	0	0	0	0	0	0	12444	1073	37	4		4	PPM1K	4	89189557	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	423215	89189557	101964719	197	139977											
ARHGEF38	54848	broad.mit.edu	37	chr4	106534548	106534549	+	Frame_Shift_Ins	INS	-	TATC	TATC													ttgtttcttcagactgatagINSgctggatgtggatagcttgt							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TATC	106534549	TATC	TATC	106534548	7	5	171	1	0	1	1	0	0	0	0	0	909	1000	35	0	402	0	ARHGEF38	4	106534548	Frame_Shift_Ins	INS	-	TCGA-50-6593-01A-11D-1753-08	17344991	106534548	84619728	198	139978											
DKK2	27123	broad.mit.edu	37	chr4	108124803	108124803	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggataccactttgcacGgactttttcaaatgatgcag	8	10	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108124803	C	C	108124803	1	2	171	0	1	0	0	0	0	0	0	0	4585	1131	39	4		4	DKK2	4	108124803	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1590255	108124803	83029473	199	139979											
COL25A1	84570	broad.mit.edu	37	chr4	109971271	109971271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacatgagtgacacagagCagctgaaagagagacttacc	11	8	0	7			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109971271	A	A	109971271	1	1	171	0	1	0	0	0	0	0	0	0	3716	725	25	3		3	COL25A1	4	109971271	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1846468	109971271	81183005	200	139980											
USP53	54532	broad.mit.edu	37	chr4	120170028	120170029	+	Nonsense_Mutation	DNP	GG	CT	CT													ggccttatggatgatgctgcGgagtgctttgtaagtgtttc					rs144065914	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	120170029	CT	CT	120170028	4	2	171	1	0	0	0	0	0	1	0	0	17211	1103	39	4	373	4	USP53	4	120170028	Nonsense_Mutation	DNP	GG	TCGA-50-6593-01A-11D-1753-08	10198757	120170028	70984248	201	139981											
INTU	27152	broad.mit.edu	37	chr4	128584607	128584607	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagacagaaaaagacacaGtccaacacaagtgatttagt	7	9	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128584607	A	A	128584607	2	1	171	1	0	0	0	0	0	0	0	1	7856	1020	36	4		4	INTU	4	128584607	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	8414579	128584607	62569669	202	139982											
GYPA	2993	broad.mit.edu	37	chr4	145037952	145037952	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaactcagaggaataaaccCtcttagagctgttcacattg	8	9	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145037952	G	G	145037952	1	3	171	0	1	0	0	0	0	0	0	0	6973	696	24	4		4	GYPA	4	145037952	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	16453345	145037952	46116324	203	139983											
DCHS2	54798	broad.mit.edu	37	chr4	155155900	155155900	+	Missense_Mutation	SNP	C	A	A													gtgtttcggaggcacctgccCcaggtttactgccggcattc							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155155900	A	A	155155900	3	1	171	1	0	0	0	0	1	0	0	0	4321	623	22	2	215	2	DCHS2	4	155155900	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	10117948	155155900	35998376	204	139984	600	2									
DCHS2	54798	broad.mit.edu	37	chr4	155155902	155155902	+	Missense_Mutation	SNP	A	G	G													gtttcggaggcacctgccccAggtttactgccggcattctt							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155155902	G	G	155155902	3	3	171	1	0	0	0	0	1	0	0	0	4321	188	7	5	217	5	DCHS2	4	155155902	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	2	155155902	35998374	205	139985	600	2									
CPE	1363	broad.mit.edu	37	chr4	166389022	166389022	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggtagtgaccacgggAtagtcttcttgggttcgtct	12	8	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166389022	G	G	166389022	1	3	171	0	1	0	0	0	0	0	0	0	3831	348	12	5		5	CPE	4	166389022	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	11233120	166389022	24765254	206	139986											
TLL1	7092	broad.mit.edu	37	chr4	167022109	167022109	+	3'UTR	SNP	A	G	G													ttaaaactgaagatattggcAcaaatgttttatacaaagag							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167022109	G	G	167022109	1	3	171	0	1	0	0	0	0	0	0	0	16068	174	6	5		5	TLL1	4	167022109	3'UTR	SNP	A	TCGA-50-6593-01A-11D-1753-08	633087	167022109	24132167	207	139987	601	2									
TLL1	7092	broad.mit.edu	37	chr4	167022111	167022111	+	3'UTR	SNP	A	G	G													aaaactgaagatattggcacAaatgttttatacaaagagtt							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167022111	G	G	167022111	1	3	171	0	1	0	0	0	0	0	0	0	16068	145	5	5		5	TLL1	4	167022111	3'UTR	SNP	A	TCGA-50-6593-01A-11D-1753-08	2	167022111	24132165	208	139988	601	2									
HPGD	3248	broad.mit.edu	37	chr4	175443105	175443105	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcttacctctcagttgTtgctggtcagccacatcgca	8	14	3	0	rs146392763		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175443105	C	C	175443105	2	2	171	1	0	0	0	0	0	0	0	1	7401	1722	60	5		5	HPGD	4	175443105	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	8420994	175443105	15711171	209	139989											
WDR17	116966	broad.mit.edu	37	chr4	177061073	177061073	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaatattctgcattgccTggagtcataaagattctaaa	8	6	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177061073	A	A	177061073	3	1	171	1	0	0	0	0	1	0	0	0	17404	1580	55	5	1500	5	WDR17	4	177061073	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	1617968	177061073	14093203	210	139990											
SNX25	83891	broad.mit.edu	37	chr4	186274560	186274564	+	Intron	DEL	TACAC	-	-													cgagcagatagtttggaattTacacttgaagagggagaaca							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	186274564	-	-	186274560	6	5	171	0	1	1	0	1	0	0	0	0	15010	1769	61	0		0	SNX25	4	186274560	Intron	DEL	TACAC	TCGA-50-6593-01A-11D-1753-08	9213487	186274560	4879716	211	139991											
CYP4V2	285440	broad.mit.edu	37	chr4	187118467	187118467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccagggctgtgagtggggCaggcatggagcaactgccca	17	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187118467	T	T	187118467	1	4	171	0	1	0	0	0	0	0	0	0	4225	725	25	4		4	CYP4V2	4	187118467	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	843907	187118467	4035809	212	139992											
KIAA0947	23379	broad.mit.edu	37	chr5	5486895	5486895	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgaaaaatattagttcGgttattggtatgtttataca	9	3	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5486895	T	T	5486895	2	4	171	1	0	0	0	0	0	0	0	1	8272	1103	39	1		1	KIAA0947	5	5486895	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08		5486895	175428365	213	139993											
SEMA5A	9037	broad.mit.edu	37	chr5	9197541	9197541	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagaccacagtctcttaaAgatcccaaaaggatgaagtc	7	10	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9197541	C	C	9197541	1	2	171	0	1	0	0	0	0	0	0	0	14150	87	3	5		5	SEMA5A	5	9197541	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	3710646	9197541	171717719	214	139994											
CTNND2	1501	broad.mit.edu	37	chr5	10982047	10982047	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcaagttcttgccctaaCaaagcttgttttcttgggga	10	8	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10982047	T	T	10982047	1	4	171	0	1	0	0	0	0	0	0	0	4054	493	17	4		4	CTNND2	5	10982047	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1784506	10982047	169933213	215	139995											
DNAH5	1767	broad.mit.edu	37	chr5	13788778	13788778	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcttcagatttcccttTagggaacaccttttggggaa	9	9	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13788778	A	A	13788778	1	1	171	0	1	0	0	0	0	0	0	0	4644	1769	61	5		5	DNAH5	5	13788778	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	2806731	13788778	167126482	216	139996											
TRIO	7204	broad.mit.edu	37	chr5	14364019	14364019	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatcttctgcagtatgtcaAtgaggtccaggcctctggta	11	9	4	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14364019	G	G	14364019	3	3	171	1	0	0	0	0	1	0	0	0	16677	101	4	5	2624	5	TRIO	5	14364019	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	575241	14364019	166551241	217	139997											
PRDM9	56979	broad.mit.edu	37	chr5	23526524	23526524	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcaggagcagcaatatccaGatccacacagccgtaatgac	8	12	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23526524	A	A	23526524	3	1	171	1	0	0	0	0	1	0	0	0	12569	942	33	4	1365	4	PRDM9	5	23526524	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	9162505	23526524	157388736	218	139998			1	109		4	4	78	G		6.547561e-10
PRDM9	56979	broad.mit.edu	37	chr5	23526569	23526569	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaaggtcaagagatcaaaGaaaggtccaaactcttgaat	8	8	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23526569	T	T	23526569	4	4	171	1	0	0	0	0	0	1	0	0	12569	943	33	3	1410	3	PRDM9	5	23526569	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	45	23526569	157388691	219	139999			1	109		4	4	78	G		6.547561e-10
PRDM9	56979	broad.mit.edu	37	chr5	23526586	23526586	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagaaaggtccaaactcttGaataaaaggacatggcagag	10	6	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23526586	A	A	23526586	2	1	171	1	0	0	0	0	0	0	0	1	12569	1281	45	4		4	PRDM9	5	23526586	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	17	23526586	157388674	220	140000			1	109		4	4	78	G		6.547561e-10
PRDM9	56979	broad.mit.edu	37	chr5	23526601	23526601	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgaataaaaggacatgGcagagggagatttcaagggc	13	6	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23526601	A	A	23526601	4	1	171	1	0	0	0	0	0	1	0	0	12569	1212	42	4	1442	4	PRDM9	5	23526601	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	15	23526601	157388659	221	140001			1	109		4	4	78	G		6.547561e-10
CDH10	1008	broad.mit.edu	37	chr5	24487942	24487942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataggcataggttgcaaGtgagtcgtaggggggtgcgg	18	5	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24487942	T	T	24487942	3	4	171	1	0	0	0	0	1	0	0	0	3126	1029	36	3	173	3	CDH10	5	24487942	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	961341	24487942	156427318	222	140002											
CDH10	1008	broad.mit.edu	37	chr5	24498501	24498501	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagttttaatcctgtagggGcttacctgccctggtctggc	12	10	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24498501	A	A	24498501	1	1	171	0	1	0	0	0	0	0	0	0	3126	1218	42	4		4	CDH10	5	24498501	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	10559	24498501	156416759	223	140003											
CDH6	1004	broad.mit.edu	37	chr5	31294040	31294040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccacatgcttgacttttaCtttctttaattttttttttc	2	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31294040	A	A	31294040	1	1	171	0	1	0	0	0	0	0	0	0	3144	580	20	3		3	CDH6	5	31294040	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	6795539	31294040	149621220	224	140004											
RNASEN	29102	broad.mit.edu	37	chr5	31429689	31429689	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatgccaaaagagagtctcCatcaacagtcaaagaaaatg	8	8	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31429689	G	G	31429689	1	3	171	0	1	0	0	0	0	0	0	0	13528	609	21	4		4	RNASEN	5	31429689	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	135649	31429689	149485571	225	140005											
PDZD2	23037	broad.mit.edu	37	chr5	31847444	31847444	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaatgaaatttagaagacGacaagagggtaaaaccgatt	9	5	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31847444	T	T	31847444	1	4	171	0	1	0	0	0	0	0	0	0	11795	1073	37	3		3	PDZD2	5	31847444	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	417755	31847444	149067816	226	140006											
IL7R	3575	broad.mit.edu	37	chr5	35874576	35874576	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggatcctatcttactaacCatcagcattttgagtttttt	5	8	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35874576	A	A	35874576	2	1	171	1	0	0	0	0	0	0	0	1	7775	581	21	2		2	IL7R	5	35874576	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	4027132	35874576	145040684	227	140007											
WDR70	55100	broad.mit.edu	37	chr5	37726964	37726964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattcagtttctaatttgGttttttttcttttgcaatag	5	6	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37726964	T	T	37726964	1	4	171	0	1	0	0	0	0	0	0	0	17448	1276	44	3		3	WDR70	5	37726964	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1852388	37726964	143188296	228	140008											
RICTOR	253260	broad.mit.edu	37	chr5	38949913	38949913	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgccaaagcttcagagtgaGataaggatggatgcattctt	11	6	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38949913	C	C	38949913	3	2	171	1	0	0	0	0	1	0	0	0	13467	942	33	4	1121	4	RICTOR	5	38949913	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1222949	38949913	141965347	229	140009											
C6	729	broad.mit.edu	37	chr5	41142965	41142965	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatgcagtatttccatctTcctgtttgcacatcttatag	7	9	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41142965	G	G	41142965	3	3	171	1	0	0	0	0	1	0	0	0	2338	1792	62	5	41	5	C6	5	41142965	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	2193052	41142965	139772295	230	140010											
C6	729	broad.mit.edu	37	chr5	41154096	41154096	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaactggcttgatgcactcCgtccctgcaagagagcaaca	9	13	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41154096	A	A	41154096	2	1	171	1	0	0	0	0	0	0	0	1	2338	639	23	1		1	C6	5	41154096	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	11131	41154096	139761164	231	140011											
HSPB3	8988	broad.mit.edu	37	chr5	53751553	53751553	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtaggcaactgcaggggctCgccactgactgaaggcagtg	15	10	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53751553	A	A	53751553	1	1	171	0	1	0	0	0	0	0	0	0	7490	899	31	3		3	HSPB3	5	53751553	5'UTR	SNP	C	TCGA-50-6593-01A-11D-1753-08	12597457	53751553	127163707	232	140012											
SNX18	112574	broad.mit.edu	37	chr5	53814525	53814525	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttcgtgctgggggaggCgtcaggcttcgtgaaggacg	19	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53814525	T	T	53814525	3	4	171	1	0	0	0	0	1	0	0	0	15003	768	27	4	745	4	SNX18	5	53814525	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	62972	53814525	127100735	233	140013											
PJA2	9867	broad.mit.edu	37	chr5	108717348	108717348	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatctcctgcctgtaattgTctgataccctcctgctggtt	7	12	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108717348	C	C	108717348	3	2	171	1	0	0	0	0	1	0	0	0	12057	1667	58	5	2070	5	PJA2	5	108717348	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	54902823	108717348	72197912	234	140014											
AQPEP	206338	broad.mit.edu	37	chr5	115336424	115336424	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaggaaaagactgggaggCcatgggtgaatggcagttcc	15	7	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115336424	T	T	115336424	1	4	171	0	1	0	0	0	0	0	0	0	836	754	26	4		4	AQPEP	5	115336424	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	6619076	115336424	65578836	235	140015											
SLC12A2	6558	broad.mit.edu	37	chr5	127514405	127514405	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttgttaatttttttaaaAtgattttaaatttactgaca	5	2	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127514405	G	G	127514405	1	3	171	0	1	0	0	0	0	0	0	0	14496	116	4	5		5	SLC12A2	5	127514405	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	12177981	127514405	53400855	236	140016											
NEUROG1	4762	broad.mit.edu	37	chr5	134871381	134871381	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctcaaggcgggctggcatCgttgcgctgtgcaggaccga	16	11	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134871381	T	T	134871381	1	4	171	0	1	0	0	0	0	0	0	0	10447	899	31	4		4	NEUROG1	5	134871381	5'UTR	SNP	C	TCGA-50-6593-01A-11D-1753-08	7356976	134871381	46043879	237	140017											
TRPC7	57113	broad.mit.edu	37	chr5	135692916	135692916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggaccaccgggatgttgcCatactcagccgagtccagga	12	14	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135692916	A	A	135692916	3	1	171	1	0	0	0	0	1	0	0	0	16709	594	21	2	2472	2	TRPC7	5	135692916	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	821535	135692916	45222344	238	140018											
SLC23A1	9963	broad.mit.edu	37	chr5	138718265	138718265	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttaggctctgtgggtagCggggtcgaggggtccctggt	18	8	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138718265	T	T	138718265	2	4	171	1	0	0	0	0	0	0	0	1	14576	755	27	4		4	SLC23A1	5	138718265	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	3025349	138718265	42196995	239	140019											
PCDHA7	56141	broad.mit.edu	37	chr5	140215949	140215949	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggggagccctcgctgacaGccacagccaccgtgctggtg	14	15	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140215949	A	A	140215949	3	1	171	1	0	0	0	0	1	0	0	0	11623	971	34	4	1983	4	PCDHA7	5	140215949	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1497684	140215949	40699311	240	140020											
PCDHA12	56137	broad.mit.edu	37	chr5	140256413	140256413	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgacgtgaacgacaatgcGcctgcgttcgcgcagcccga	13	15	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140256413	T	T	140256413	2	4	171	1	0	0	0	0	0	0	0	1	11616	1074	38	3		3	PCDHA12	5	140256413	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	40464	140256413	40658847	241	140021											
PCDHB1	29930	broad.mit.edu	37	chr5	140431512	140431512	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccctttgggttcacgttttCctctgcagagcgcccaggat	10	14	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140431512	T	T	140431512	3	4	171	1	0	0	0	0	1	0	0	0	11628	855	30	4	459	4	PCDHB1	5	140431512	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	175099	140431512	40483748	242	140022											
PCDHB3	56132	broad.mit.edu	37	chr5	140482154	140482154	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcggccaagcacaggctgGtggtgctggtcaaggacaat	15	10	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140482154	A	A	140482154	3	1	171	1	0	0	0	0	1	0	0	0	11637	1261	44	4	1923	4	PCDHB3	5	140482154	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	50642	140482154	40433106	243	140023											
PCDHB13	56123	broad.mit.edu	37	chr5	140594897	140594897	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatccgcggaaaacttttAcaccctactaacggagagac	8	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140594897	G	G	140594897	3	3	171	1	0	0	0	0	1	0	0	0	11632	391	14	5	1204	5	PCDHB13	5	140594897	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	112743	140594897	40320363	244	140024											
SH3TC2	79628	broad.mit.edu	37	chr5	148388674	148388674	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggaacggcagtggactaAaacaaaggggagtcagccat	15	7	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148388674	T	T	148388674	1	4	171	0	1	0	0	0	0	0	0	0	14375	29	1	5		5	SH3TC2	5	148388674	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	7793777	148388674	32526586	245	140025											
FAM71B	153745	broad.mit.edu	37	chr5	156592624	156592624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccccagatagaagtgttgGggtactgcagtaactctcta	11	9	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156592624	T	T	156592624	3	4	171	1	0	0	0	0	1	0	0	0	5659	1232	43	2	1269	2	FAM71B	5	156592624	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	8203950	156592624	24322636	246	140026											
ADAM19	8728	broad.mit.edu	37	chr5	156940420	156940420	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctggcacctttcccaCaaagtacacacctggtctca	7	16	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156940420	T	T	156940420	1	4	171	0	1	0	0	0	0	0	0	0	240	493	17	4		4	ADAM19	5	156940420	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	347796	156940420	23974840	247	140027											
ATP10B	23120	broad.mit.edu	37	chr5	160026025	160026025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggctccatgtgcagccGgtcaccagctcctgcttggg	15	13	1	0	rs17480493	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160026025	T	T	160026025	1	4	171	0	1	0	0	0	0	0	0	0	1121	1131	39	1		1	ATP10B	5	160026025	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3085605	160026025	20889235	248	140028											
ATP10B	23120	broad.mit.edu	37	chr5	160061467	160061467	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagatgtactggatctgGcccaagtcctctgcgatgtt	12	9	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160061467	T	T	160061467	2	4	171	1	0	0	0	0	0	0	0	1	1121	1190	42	3		3	ATP10B	5	160061467	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	35442	160061467	20853793	249	140029											
DOCK2	1794	broad.mit.edu	37	chr5	169186763	169186763	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgatgtagaaatggtctttGatgcgaagttactcaggtga	12	4	2	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169186763	C	C	169186763	3	2	171	1	0	0	0	0	1	0	0	0	4727	1290	45	4	2525	4	DOCK2	5	169186763	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	9125296	169186763	11728497	250	140030											
DOCK2	1794	broad.mit.edu	37	chr5	169446013	169446013	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggtaggacctatattagaGatgacacttatccctgaggc	10	8	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169446013	A	A	169446013	2	1	171	1	0	0	0	0	0	0	0	1	4727	933	33	4		4	DOCK2	5	169446013	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	259250	169446013	11469247	251	140031											
UNC5A	90249	broad.mit.edu	37	chr5	176301187	176301187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgtgcccccagcactcctGccccagctcccacgccaagg	8	23	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176301187	T	T	176301187	1	4	171	0	1	0	0	0	0	0	0	0	17117	1334	46	3		3	UNC5A	5	176301187	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	6855174	176301187	4614073	252	140032											
FGFR4	2264	broad.mit.edu	37	chr5	176520557	176520557	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcccccgggacaggtgcGctgagctgtgtgggggcagg	19	10	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176520557	A	A	176520557	1	1	171	0	1	0	0	0	0	0	0	0	5925	1102	38	4		4	FGFR4	5	176520557	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	219370	176520557	4394703	253	140033											
FAM153C	653316	broad.mit.edu	37	chr5	177466249	177466249	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttagtatgagttgatttGctctgttcttctttggggtt	10	5	4	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177466249	T	T	177466249	1	4	171	0	1	0	0	0	0	0	0	0	5508	1334	46	3		3	FAM153C	5	177466249	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	945692	177466249	3449011	254	140034											
ADAMTS2	9509	broad.mit.edu	37	chr5	178541268	178541268	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagcctgggatggagcaaTagcgggacaagacttccatc	13	9	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178541268	C	C	178541268	3	2	171	1	0	0	0	0	1	0	0	0	265	1406	49	5	403	5	ADAMTS2	5	178541268	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	1075019	178541268	2373992	255	140035											
BTNL3	10917	broad.mit.edu	37	chr5	180419856	180419856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagtttgtccaggccttGgtgggggaggacgccgtgtt	18	8	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180419856	T	T	180419856	3	4	171	1	0	0	0	0	1	0	0	0	1576	1339	47	2	99	2	BTNL3	5	180419856	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1878588	180419856	495404	256	140036											
ATXN1	6310	broad.mit.edu	37	chr6	16328216	16328216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccggggtccctggctgcGgggtggcgtacgcggcaggc	19	13	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16328216	A	A	16328216	3	1	171	1	0	0	0	0	1	0	0	0	1213	1116	39	4	2129	4	ATXN1	6	16328216	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08		16328216	154786851	257	140037											
RBM24	221662	broad.mit.edu	37	chr6	17292081	17292081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgccgcctccaccaccCcttacattgattacactgga	6	17	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17292081	A	A	17292081	3	1	171	1	0	0	0	0	1	0	0	0	13232	623	22	2	489	2	RBM24	6	17292081	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	963865	17292081	153822986	258	140038											
BTN1A1	696	broad.mit.edu	37	chr6	26506762	26506762	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttttttctgaaaagtttaGagtggcattggagtgactat	10	3	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26506762	T	T	26506762	1	4	171	0	1	0	0	0	0	0	0	0	1569	957	33	3		3	BTN1A1	6	26506762	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	9214681	26506762	144608305	259	140039											
TRIM39	56658	broad.mit.edu	37	chr6	30309955	30309955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttttactgagaaactttgGcccctcttctacccaggcat	6	13	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30309955	T	T	30309955	3	4	171	1	0	0	0	0	1	0	0	0	16637	1212	42	3	1502	3	TRIM39	6	30309955	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	3803193	30309955	140805112	260	140040											
HLA-B	3106	broad.mit.edu	37	chr6	31248723	31248723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaccaagtgtttgggcaGgatgagatgatcgacgtcat	14	6	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31248723	T	T	31248723	1	4	171	0	1	0	0	0	0	0	0	0	7263	1015	35	2		2	HLA-B	6	31248723	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	938768	31248723	139866344	261	140041											
TMEM217	221468	broad.mit.edu	37	chr6	37186304	37186304	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaatctccgctgtagaaattCgtctcttgtaggaaattata	8	7	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37186304	G	G	37186304	3	3	171	1	0	0	0	0	1	0	0	0	16263	884	31	4	198	4	TMEM217	6	37186304	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	5937581	37186304	133928763	262	140042											
CUL7	9820	broad.mit.edu	37	chr6	43018826	43018826	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtgtgtcccgcacataCaaagcataggtattgccact	9	11	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43018826	G	G	43018826	3	3	171	1	0	0	0	0	1	0	0	0	4093	477	17	4	4075	4	CUL7	6	43018826	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	5832522	43018826	128096241	263	140043											
TDRD6	221400	broad.mit.edu	37	chr6	46660740	46660740	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccattccttctgaacttctGtcggttcccatgcaagcctt	7	14	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46660740	C	C	46660740	2	2	171	1	0	0	0	0	0	0	0	1	15856	1364	48	4		4	TDRD6	6	46660740	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	3641914	46660740	124454327	264	140044											
DEFB110	245913	broad.mit.edu	37	chr6	49986946	49986946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatagagtgaaaatgtccacCtacctatggaggaaagttta	9	6	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49986946	A	A	49986946	1	1	171	0	1	0	0	0	0	0	0	0	4439	696	24	2		2	DEFB110	6	49986946	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3326206	49986946	121128121	265	140045											
PKHD1	5314	broad.mit.edu	37	chr6	51887575	51887575	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catatatatgctttaaaataTatgtgtgtggcatctttact	6	5	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51887575	C	C	51887575	1	2	171	0	1	0	0	0	0	0	0	0	12066	1421	49	5		5	PKHD1	6	51887575	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	1900629	51887575	119227492	266	140046											
COL21A1	81578	broad.mit.edu	37	chr6	55932126	55932126	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccttgatttcctttgtcCccctacaaaaaggcagtttg	6	12	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55932126	A	A	55932126	2	1	171	1	0	0	0	0	0	0	0	1	3712	610	22	2		2	COL21A1	6	55932126	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	4044551	55932126	115182941	267	140047											
DST	667	broad.mit.edu	37	chr6	56472096	56472096	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttccctgactgtgcatcaAtttatcatgacttaacaagg	6	10	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56472096	G	G	56472096	1	3	171	0	1	0	0	0	0	0	0	0	4823	116	4	5		5	DST	6	56472096	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	539970	56472096	114642971	268	140048											
PRIM2	5558	broad.mit.edu	37	chr6	57398139	57398139	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcttgtagctttctaCcaaatccttcccactttaca	2	12	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398139	T	T	57398139	3	4	171	1	0	0	0	0	1	0	0	0	12597	507	18	4	876	4	PRIM2	6	57398139	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	926043	57398139	113716928	269	140049											
BCKDHB	594	broad.mit.edu	37	chr6	80838877	80838877	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttaaatactgtttttcaGtaatatttggtgaagatgtt	7	2	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80838877	T	T	80838877	5	4	171	1	0	0	0	0	0	0	1	0	1365	1043	36	3	284	3	BCKDHB	6	80838877	Splice_Site	SNP	G	TCGA-50-6593-01A-11D-1753-08	23440738	80838877	90276190	270	140050											
EPHA7	2045	broad.mit.edu	37	chr6	93955244	93955244	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgttttggcccatataaAattaaggtataaagaacaaa	7	4	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93955244	T	T	93955244	1	4	171	0	1	0	0	0	0	0	0	0	5214	29	1	5		5	EPHA7	6	93955244	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	13116367	93955244	77159823	271	140051											
C6orf168	84553	broad.mit.edu	37	chr6	99771263	99771263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaaccaacagtgttttaCtaatcatgcaaaaggaaaga	8	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771263	A	A	99771263	1	1	171	0	1	0	0	0	0	0	0	0	2366	580	20	3		3	C6orf168	6	99771263	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	5816019	99771263	71343804	272	140052											
ASCC3	10973	broad.mit.edu	37	chr6	101315740	101315740	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatagttgtccatagtctGtgtttataataatgttcaac	6	6	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101315740	C	C	101315740	1	2	171	0	1	0	0	0	0	0	0	0	1037	1392	48	4		4	ASCC3	6	101315740	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1544477	101315740	69799327	273	140053											
HACE1	57531	broad.mit.edu	37	chr6	105192119	105192120	+	Intron	INS	-	A	A													gaaccactaacaacaagaacINSaaaaaacttagctcatattt							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105192120	A	A	105192119	6	5	171	0	1	1	1	0	0	0	0	0	7006	493	17	0		0	HACE1	6	105192119	Intron	INS	-	TCGA-50-6593-01A-11D-1753-08	3876379	105192119	65922948	274	140054											
SLC35F1	222553	broad.mit.edu	37	chr6	118598573	118598573	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcattatttgtatacatctGataagtgggggggaaaaaag	11	3	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118598573	A	A	118598573	1	1	171	0	1	0	0	0	0	0	0	0	14702	1305	45	4		4	SLC35F1	6	118598573	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	13406454	118598573	52516494	275	140055											
MED23	9439	broad.mit.edu	37	chr6	131943063	131943063	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtacaacagcagagctcacTgtattaggaattgtcaaaat	8	7	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131943063	A	A	131943063	2	1	171	1	0	0	0	0	0	0	0	1	9534	1567	55	5		5	MED23	6	131943063	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	13344490	131943063	39172004	276	140056											
VNN2	8875	broad.mit.edu	37	chr6	133073886	133073886	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctcagagtacaggtgGtactacaacaaatggatagg	13	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133073886	C	C	133073886	4	2	171	1	0	0	0	0	0	1	0	0	17310	1256	44	4	1038	4	VNN2	6	133073886	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1130823	133073886	38041181	277	140057											
TXLNB	167838	broad.mit.edu	37	chr6	139598001	139598001	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaataaaaaatcaaacTtttcttccggtgtttgcaac	5	8	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139598001	A	A	139598001	3	1	171	1	0	0	0	0	1	0	0	0	16914	1609	56	5	1604	5	TXLNB	6	139598001	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	6524115	139598001	31517066	278	140058											
GRM1	2911	broad.mit.edu	37	chr6	146480615	146480615	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgactcttgcgcaaactcCgagagaggcttcccaaggct	10	14	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146480615	A	A	146480615	2	1	171	1	0	0	0	0	0	0	0	1	6862	644	23	1		1	GRM1	6	146480615	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	6882614	146480615	24634452	279	140059											
ZDHHC14	79683	broad.mit.edu	37	chr6	158066744	158066744	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcgcggtccctcacttcCgcttgcctccttgactcgca	8	18	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158066744	T	T	158066744	1	4	171	0	1	0	0	0	0	0	0	0	17730	667	23	4		4	ZDHHC14	6	158066744	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	11586129	158066744	13048323	280	140060											
IGF2R	3482	broad.mit.edu	37	chr6	160493977	160493977	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctctggggttgtcctcagTctctttgcatgctaatggca	10	11	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160493977	C	C	160493977	1	2	171	0	1	0	0	0	0	0	0	0	7646	1682	58	5		5	IGF2R	6	160493977	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	2427233	160493977	10621090	281	140061											
CARD11	84433	broad.mit.edu	37	chr7	2976752	2976752	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggcctcccgccgcaccatCtcgatcctcatctcgtcgtt	7	19	3	0	rs112171353	byFrequency	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2976752	A	A	2976752	3	1	171	1	0	0	0	0	1	0	0	0	2671	912	32	3	2272	3	CARD11	7	2976752	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08		2976752	156161911	282	140062											
MMD2	221938	broad.mit.edu	37	chr7	4965100	4965100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcatgggtggcacagttGgccgcatgttcatactctgt	12	10	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4965100	T	T	4965100	2	4	171	1	0	0	0	0	0	0	0	1	9737	1335	47	2		2	MMD2	7	4965100	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	1988348	4965100	154173563	283	140063											
THSD7A	221981	broad.mit.edu	37	chr7	11447019	11447019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattccaccatgcaggacGtgttcatctgccagttcttc	9	13	3	0	rs142233480	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11447019	T	T	11447019	3	4	171	1	0	0	0	0	1	0	0	0	16002	1145	40	3	1179	3	THSD7A	7	11447019	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	6481919	11447019	147691644	284	140064											
DGKB	1607	broad.mit.edu	37	chr7	14797366	14797366	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtagaatctataaaaaAcagaaaacacaaaaattgtt	4	5	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14797366	G	G	14797366	1	3	171	0	1	0	0	0	0	0	0	0	4506	58	2	5		5	DGKB	7	14797366	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	3350347	14797366	144341297	285	140065											
DNAH11	8701	broad.mit.edu	37	chr7	21721152	21721152	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctctcctttttaaaaaatGattccttctagatttctcag	3	9	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21721152	T	T	21721152	1	4	171	0	1	0	0	0	0	0	0	0	4639	1305	45	3		3	DNAH11	7	21721152	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	6923786	21721152	137417511	286	140066											
TRA2A	29896	broad.mit.edu	37	chr7	23556189	23556189	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaatactgaaacaaaaTggctaaagtccttccctctt	5	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23556189	C	C	23556189	1	2	171	0	1	0	0	0	0	0	0	0	16557	1479	51	5		5	TRA2A	7	23556189	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	1835037	23556189	135582474	287	140067											
HOXA13	3209	broad.mit.edu	37	chr7	27237756	27237756	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcattattatcattatctgGgcaaagcaacgagttctgaa	8	7	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27237756	T	T	27237756	1	4	171	0	1	0	0	0	0	0	0	0	7358	1247	43	2		2	HOXA13	7	27237756	3'UTR	SNP	G	TCGA-50-6593-01A-11D-1753-08	3681567	27237756	131900907	288	140068											
CHN2	1124	broad.mit.edu	37	chr7	29394316	29394316	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatctccccagaagtcgtTagcaggccagcctttctgaa	8	12	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29394316	C	C	29394316	1	2	171	0	1	0	0	0	0	0	0	0	3394	1769	61	5		5	CHN2	7	29394316	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	2156560	29394316	129744347	289	140069											
NOD1	10392	broad.mit.edu	37	chr7	30492353	30492353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggaagaagaatttgaccCctgcgtctagccggcccgtg	13	11	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30492353	A	A	30492353	3	1	171	1	0	0	0	0	1	0	0	0	10611	623	22	2	2217	2	NOD1	7	30492353	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1098037	30492353	128646310	290	140070											
GGCT	79017	broad.mit.edu	37	chr7	30544351	30544351	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacgcccctgcactggagCctgaagcagagtgtaaggaa	12	11	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30544351	A	A	30544351	1	1	171	0	1	0	0	0	0	0	0	0	6419	754	26	3		3	GGCT	7	30544351	5'UTR	SNP	C	TCGA-50-6593-01A-11D-1753-08	51998	30544351	128594312	291	140071											
AVL9	23080	broad.mit.edu	37	chr7	33066410	33066410	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaacacacacagccaaggCttcttgataattattcacct	5	13	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33066410	G	G	33066410	1	3	171	0	1	0	0	0	0	0	0	0	1233	812	28	4		4	AVL9	7	33066410	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2522059	33066410	126072253	292	140072											
TBX20	57057	broad.mit.edu	37	chr7	35242211	35242211	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgtcagaggcattcccagtCggctatatggtggcagagaa	14	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35242211	T	T	35242211	3	4	171	1	0	0	0	0	1	0	0	0	15778	884	31	4	171	4	TBX20	7	35242211	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2175801	35242211	123896452	293	140073											
VPS41	27072	broad.mit.edu	37	chr7	38937702	38937702	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaccttacctcagactcatCtgtagattcttcaagggacc	6	14	5	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38937702	T	T	38937702	3	4	171	1	0	0	0	0	1	0	0	0	17337	913	32	4	2627	4	VPS41	7	38937702	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	3695491	38937702	120200961	294	140074											
VPS41	27072	broad.mit.edu	37	chr7	38937757	38937757	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcatagaaaaagaaaatggtCagaagagatgataaaagaat	10	2	1	6			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38937757	G	G	38937757	1	3	171	0	1	0	0	0	0	0	0	0	17337	841	29	4		4	VPS41	7	38937757	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	55	38937757	120200906	295	140075											
RALA	5898	broad.mit.edu	37	chr7	39736360	39736360	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaatcagatttagaagatAaaagacaggtttctgtagaa	8	4	2	5			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39736360	G	G	39736360	3	3	171	1	0	0	0	0	1	0	0	0	13118	363	13	5	410	5	RALA	7	39736360	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	798603	39736360	119402303	296	140076											
ZMIZ2	83637	broad.mit.edu	37	chr7	44803065	44803065	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgctgctaaaatatcttGagtcgatacatcagtgtcat	8	8	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44803065	T	T	44803065	1	4	171	0	1	0	0	0	0	0	0	0	17823	1305	45	3		3	ZMIZ2	7	44803065	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	5066705	44803065	114335598	297	140077											
CCM2	83605	broad.mit.edu	37	chr7	45104118	45104118	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacgatgctgtgctcagcctGtctgcgtacaacgtcaagct	10	13	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45104118	C	C	45104118	2	2	171	1	0	0	0	0	0	0	0	1	2938	1364	48	4		4	CCM2	7	45104118	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	301053	45104118	114034545	298	140078											
UPP1	7378	broad.mit.edu	37	chr7	48146550	48146550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttgagcagattgtcctgGggaagcgggtcatccggaaa	15	7	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48146550	T	T	48146550	3	4	171	1	0	0	0	0	1	0	0	0	17138	1232	43	2	535	2	UPP1	7	48146550	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	3042432	48146550	110992113	299	140079											
VSTM2A	222008	broad.mit.edu	37	chr7	54610349	54610349	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgagactgagcctgcCatccactcgcacgcctttct	9	16	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54610349	A	A	54610349	1	1	171	0	1	0	0	0	0	0	0	0	17356	609	21	2		2	VSTM2A	7	54610349	5'UTR	SNP	C	TCGA-50-6593-01A-11D-1753-08	6463799	54610349	104528314	300	140080											
ZNF107	51427	broad.mit.edu	37	chr7	64167304	64167304	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaccttactatacataaaAtaattcatactggagaaaaa	3	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64167304	T	T	64167304	3	4	171	1	0	0	0	0	1	0	0	0	17841	101	4	5	628	5	ZNF107	7	64167304	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	9556955	64167304	94971359	301	140081											
CRCP	27297	broad.mit.edu	37	chr7	65610483	65610483	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgactgctgtggagatccAgctggtgagtgaagggcgcc	17	8	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65610483	T	T	65610483	3	4	171	1	0	0	0	0	1	0	0	0	3884	188	7	5	401	5	CRCP	7	65610483	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	1443179	65610483	93528180	302	140082											
WBSCR28	135886	broad.mit.edu	37	chr7	73279758	73279758	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctcagtaaggtgggtGgtctcggggtgaggctgggg	22	6	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73279758	C	C	73279758	1	2	171	0	1	0	0	0	0	0	0	0	17394	1363	47	4		4	WBSCR28	7	73279758	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	7669275	73279758	85858905	303	140083											
CACNA2D1	781	broad.mit.edu	37	chr7	81667468	81667468	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggctgtgatattattcacCgcgtctttcaacactttttt	6	9	3	1	rs73151507	byFrequency;by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81667468	G	G	81667468	2	3	171	1	0	0	0	0	0	0	0	1	2574	639	23	4		4	CACNA2D1	7	81667468	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	8387710	81667468	77471195	304	140084											
SEMA3D	223117	broad.mit.edu	37	chr7	84694657	84694657	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattaattattccaaaacaCatttgaatgaataataatac	2	5	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84694657	A	A	84694657	1	1	171	0	1	0	0	0	0	0	0	0	14140	493	17	3		3	SEMA3D	7	84694657	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3027189	84694657	74444006	305	140085											
ABCB1	5243	broad.mit.edu	37	chr7	87133638	87133638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagctgctgatgcgtgCcatgctccttgactctgcca	10	15	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87133638	A	A	87133638	3	1	171	1	0	0	0	0	1	0	0	0	40	739	26	3	82	3	ABCB1	7	87133638	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2438981	87133638	72005025	306	140086											
DLX5	1749	broad.mit.edu	37	chr7	96650229	96650229	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtggtggctgagcgagcggGacgagccctggggctcccac	19	12	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96650229	C	C	96650229	3	2	171	1	0	0	0	0	1	0	0	0	4614	1174	41	4	184	4	DLX5	7	96650229	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	9516591	96650229	62488434	307	140087											
MUC17	140453	broad.mit.edu	37	chr7	100683669	100683669	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaagaactccattaacaaGtatgtctgtcagcaccatgc	7	10	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100683669	C	C	100683669	3	2	171	1	0	0	0	0	1	0	0	0	10068	1029	36	4	8982	4	MUC17	7	100683669	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	4033440	100683669	58454994	308	140088											
RELN	5649	broad.mit.edu	37	chr7	103252320	103252320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaaattaaagtcttcaCttcacactatataccaaaat	3	8	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103252320	A	A	103252320	1	1	171	0	1	0	0	0	0	0	0	0	13328	580	20	3		3	RELN	7	103252320	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2568651	103252320	55886343	309	140089											
DOCK4	9732	broad.mit.edu	37	chr7	111535708	111535708	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgccatctggaagagtcCtaccatcttcttgcatcaga	9	11	4	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111535708	T	T	111535708	3	4	171	1	0	0	0	0	1	0	0	0	4729	681	24	4	4501	4	DOCK4	7	111535708	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	8283388	111535708	47602955	310	140090											
C7orf53	286006	broad.mit.edu	37	chr7	112125071	112125071	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaatagccactgctgactgGatgtgtgggtgtggtggagg	17	5	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112125071	C	C	112125071	1	2	171	0	1	0	0	0	0	0	0	0	2427	1189	41	4		4	C7orf53	7	112125071	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	589363	112125071	47013592	311	140091											
PPP1R3A	5506	broad.mit.edu	37	chr7	113522066	113522066	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaaatggattcatcttctCtaataccgtggcaaccagaa	7	10	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113522066	A	A	113522066	1	1	171	0	1	0	0	0	0	0	0	0	12472	928	32	3		3	PPP1R3A	7	113522066	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1396995	113522066	45616597	312	140092											
CFTR	1080	broad.mit.edu	37	chr7	117243042	117243042	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccaagcattatggtagtgGaaagataaggttttttgttt	10	4	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117243042	T	T	117243042	1	4	171	0	1	0	0	0	0	0	0	0	3324	1189	41	3		3	CFTR	7	117243042	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3720976	117243042	41895621	313	140093											
CTTNBP2	83992	broad.mit.edu	37	chr7	117386042	117386042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaattttcaaagaaaagCagctgatatacaagtaatca	6	7	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117386042	A	A	117386042	1	1	171	0	1	0	0	0	0	0	0	0	4079	725	25	3		3	CTTNBP2	7	117386042	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	143000	117386042	41752621	314	140094											
CTTNBP2	83992	broad.mit.edu	37	chr7	117417770	117417770	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtacataagaagcttgaggCtgtccacattaccagtgtcc	10	10	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117417770	G	G	117417770	3	3	171	1	0	0	0	0	1	0	0	0	4079	797	28	4	2482	4	CTTNBP2	7	117417770	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	31728	117417770	41720893	315	140095											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432194	117432194	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtcaatacctggtctGgccatggtggcactggtgca	13	11	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117432194	T	T	117432194	2	4	171	1	0	0	0	0	0	0	0	1	4079	1335	47	2		2	CTTNBP2	7	117432194	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	14424	117432194	41706469	316	140096											
CTTNBP2	83992	broad.mit.edu	37	chr7	117450774	117450774	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggtgatctcctcattGgacaccatgttgtggggaaa	13	7	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117450774	A	A	117450774	1	1	171	0	1	0	0	0	0	0	0	0	4079	1363	47	4		4	CTTNBP2	7	117450774	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	18580	117450774	41687889	317	140097											
C7orf58	79974	broad.mit.edu	37	chr7	120765938	120765938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtttcatgtaccctgtaGtgctccaggtcagtatgcca	10	11	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120765938	T	T	120765938	3	4	171	1	0	0	0	0	1	0	0	0	2430	1029	36	3	1156	3	C7orf58	7	120765938	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	3315164	120765938	38372725	318	140098											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651908	121651909	+	Frame_Shift_Ins	INS	-	T	T													tgtctgataatgagggctccINScaacacatcttcactgtttc							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121651909	T	T	121651908	7	5	171	1	0	1	1	0	0	0	0	0	12922	610	22	0	2854	0	PTPRZ1	7	121651908	Frame_Shift_Ins	INS	-	TCGA-50-6593-01A-11D-1753-08	885970	121651908	37486755	319	140099											
RNF133	168433	broad.mit.edu	37	chr7	122338345	122338345	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctaaacaaagtctatgaaTgtgataaaagatgaaatatg	8	3	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122338345	C	C	122338345	3	2	171	1	0	0	0	0	1	0	0	0	13550	1464	51	5	506	5	RNF133	7	122338345	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	686437	122338345	36800318	320	140100											
ZC3HC1	51530	broad.mit.edu	37	chr7	129665899	129665899	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgtctctttttctcacggGaaacaccatgtgatttctaa	6	9	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129665899	A	A	129665899	1	1	171	0	1	0	0	0	0	0	0	0	17703	1189	41	4		4	ZC3HC1	7	129665899	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	7327554	129665899	29472764	321	140101											
WDR91	29062	broad.mit.edu	37	chr7	134873387	134873387	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggccccctcaccctctactCaggctgacagctgttctgga	9	16	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134873387	T	T	134873387	1	4	171	0	1	0	0	0	0	0	0	0	17465	841	29	4		4	WDR91	7	134873387	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	5207488	134873387	24265276	322	140102											
STRA8	346673	broad.mit.edu	37	chr7	134927625	134927625	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtaatggagcactactTgccaaccccatctccctccc	6	16	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134927625	G	G	134927625	1	3	171	0	1	0	0	0	0	0	0	0	15441	1827	63	5		5	STRA8	7	134927625	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	54238	134927625	24211038	323	140103											
UBN2	254048	broad.mit.edu	37	chr7	138967913	138967913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaccatctgcctcgacgaCtcactagatgaagacctttc	7	13	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138967913	A	A	138967913	3	1	171	1	0	0	0	0	1	0	0	0	17019	564	20	3	2320	3	UBN2	7	138967913	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	4040288	138967913	20170750	324	140104											
JHDM1D	80853	broad.mit.edu	37	chr7	139794028	139794028	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaatgaaagcaggttgGgcgtgatggctcacgcctgt	13	7	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139794028	A	A	139794028	1	1	171	0	1	0	0	0	0	0	0	0	8018	1247	43	4		4	JHDM1D	7	139794028	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	826115	139794028	19344635	325	140105											
MGAM	8972	broad.mit.edu	37	chr7	141785590	141785590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctcctataaagcttgggCgtgtacagcagcagcctctc	10	12	2	0	rs111685780		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141785590	A	A	141785590	1	1	171	0	1	0	0	0	0	0	0	0	9634	783	27	3		3	MGAM	7	141785590	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1991562	141785590	17353073	326	140106											
MGAM	8972	broad.mit.edu	37	chr7	141802532	141802532	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccactggcttaggagggtGctgaatatcgtaagggcata	13	7	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141802532	C	C	141802532	1	2	171	0	1	0	0	0	0	0	0	0	9634	1334	46	4		4	MGAM	7	141802532	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	16942	141802532	17336131	327	140107											
OR2A1	346528	broad.mit.edu	37	chr7	144015559	144015559	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcgaatgtctcctgctGgtgctgatgtcctacgatcg	11	12	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144015559	A	A	144015559	2	1	171	1	0	0	0	0	0	0	0	1	11068	1335	47	4		4	OR2A1	7	144015559	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	2213027	144015559	15123104	328	140108											
CNTNAP2	26047	broad.mit.edu	37	chr7	147183020	147183020	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttctgtttgtctctctctCtgacagatgtgtgcccaatc	7	11	4	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147183020	A	A	147183020	1	1	171	0	1	0	0	0	0	0	0	0	3679	928	32	3		3	CNTNAP2	7	147183020	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3167461	147183020	11955643	329	140109											
GIMAP6	474344	broad.mit.edu	37	chr7	150325428	150325428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcaagctccttcccagcCcactctcggctccgtctctg	6	20	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150325428	A	A	150325428	3	1	171	1	0	0	0	0	1	0	0	0	6447	624	22	2	624	2	GIMAP6	7	150325428	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	3142408	150325428	8813235	330	140110											
GIMAP5	55340	broad.mit.edu	37	chr7	150439764	150439764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaagacctggtgcgggaGtgtgagagaaggtactgtgc	17	6	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150439764	T	T	150439764	3	4	171	1	0	0	0	0	1	0	0	0	6446	1020	36	3	543	3	GIMAP5	7	150439764	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	114336	150439764	8698899	331	140111											
CSMD1	64478	broad.mit.edu	37	chr8	4851843	4851843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccccggccaggagcaaGtccgtcttacccttcgctgc	10	18	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4851843	T	T	4851843	1	4	171	0	1	0	0	0	0	0	0	0	3978	1044	36	3		3	CSMD1	8	4851843	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08		4851843	141512179	332	140112											
ASAH1	427	broad.mit.edu	37	chr8	17942257	17942257	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgcgctgagacttgggtaGgaggcccggtgggacccgcg	19	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17942257	C	C	17942257	1	2	171	0	1	0	0	0	0	0	0	0	1010	987	35	4		4	ASAH1	8	17942257	5'Flank	SNP	G	TCGA-50-6593-01A-11D-1753-08	13090414	17942257	128421765	333	140113											
XPO7	23039	broad.mit.edu	37	chr8	21860812	21860812	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgaccactacttggcttgaTattgcttaatgaaaaggtga	9	8	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21860812	C	C	21860812	3	2	171	1	0	0	0	0	1	0	0	0	17576	1406	49	5	3180	5	XPO7	8	21860812	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	3918555	21860812	124503210	334	140114											
ADAM7	8756	broad.mit.edu	37	chr8	24342845	24342845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatccagggggtatgtgcCtgccctattattccaccagt	9	12	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24342845	A	A	24342845	3	1	171	1	0	0	0	0	1	0	0	0	251	680	24	2	969	2	ADAM7	8	24342845	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2482033	24342845	122021177	335	140115											
DPYSL2	1808	broad.mit.edu	37	chr8	26513217	26513217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaacatcaccagcctgGgctagagctcctgggctgtg	13	13	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26513217	T	T	26513217	3	4	171	1	0	0	0	0	1	0	0	0	4787	1232	43	2	1768	2	DPYSL2	8	26513217	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2170372	26513217	119850805	336	140116											
TEX15	56154	broad.mit.edu	37	chr8	30694594	30694594	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccagaaggagatggctgtActtcatatgatgttatccct	10	9	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30694594	T	T	30694594	3	4	171	1	0	0	0	0	1	0	0	0	15901	391	14	5	320	5	TEX15	8	30694594	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	4181377	30694594	115669428	337	140117											
ST18	9705	broad.mit.edu	37	chr8	53049131	53049131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatgaagggcaagccggCcacgcttcccgcacttactt	12	13	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53049131	A	A	53049131	1	1	171	0	1	0	0	0	0	0	0	0	15330	754	26	3		3	ST18	8	53049131	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	22354537	53049131	93314891	338	140118											
IMPAD1	54928	broad.mit.edu	37	chr8	57876276	57876276	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaccatgcatagtctccaCcaatcctttgaagcttccag	5	13	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57876276	A	A	57876276	1	1	171	0	1	0	0	0	0	0	0	0	7795	522	18	3		3	IMPAD1	8	57876276	3'UTR	SNP	C	TCGA-50-6593-01A-11D-1753-08	4827145	57876276	88487746	339	140119											
DNAJC5B	85479	broad.mit.edu	37	chr8	66963858	66963858	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctatacgaaattcttggtCtgcataagggagcatcaaat	8	8	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66963858	T	T	66963858	2	4	171	1	0	0	0	0	0	0	0	1	4691	912	32	4		4	DNAJC5B	8	66963858	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	9087582	66963858	79400164	340	140120											
TRPA1	8989	broad.mit.edu	37	chr8	72973915	72973915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaacaatatccacgctacCagaataggacgatatcatca	6	10	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72973915	A	A	72973915	3	1	171	1	0	0	0	0	1	0	0	0	16702	594	21	2	2554	2	TRPA1	8	72973915	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	6010057	72973915	73390107	341	140121											
FABP12	646486	broad.mit.edu	37	chr8	82437306	82437306	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttgagactgagtttgatGatactttctcgtatgttcgt	10	5	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82437306	T	T	82437306	4	4	171	1	0	0	0	0	0	1	0	0	5402	1294	45	3	26	3	FABP12	8	82437306	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	9463391	82437306	63926716	342	140122											
LRRCC1	85444	broad.mit.edu	37	chr8	86027601	86027601	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggattttggtttgtttctGtgtcatagatcattgataga	10	3	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86027601	T	T	86027601	1	4	171	0	1	0	0	0	0	0	0	0	9113	1392	48	3		3	LRRCC1	8	86027601	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3590295	86027601	60336421	343	140123											
CA2	760	broad.mit.edu	37	chr8	86385979	86385979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcagtttcactttcactGgggttcacttgatggacaag	10	8	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86385979	T	T	86385979	3	4	171	1	0	0	0	0	1	0	0	0	2542	1357	47	2	300	2	CA2	8	86385979	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	358378	86385979	59978043	344	140124											
MMP16	4325	broad.mit.edu	37	chr8	89209452	89209452	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgctgcatggcagctagGgcagactgcatggtctctgc	13	11	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89209452	T	T	89209452	2	4	171	1	0	0	0	0	0	0	0	1	9748	1219	43	2		2	MMP16	8	89209452	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	2823473	89209452	57154570	345	140125											
CALB1	793	broad.mit.edu	37	chr8	91090510	91090510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaataaactgtactgaatgGgtcttgctatatcttacttg	7	6	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91090510	T	T	91090510	1	4	171	0	1	0	0	0	0	0	0	0	2599	1247	43	2		2	CALB1	8	91090510	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1881058	91090510	55273512	346	140126											
RUNX1T1	862	broad.mit.edu	37	chr8	92999139	92999139	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagatgtttccactcttcTgcccattctctgtctgttag	6	12	5	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92999139	G	G	92999139	2	3	171	1	0	0	0	0	0	0	0	1	13858	1567	55	5		5	RUNX1T1	8	92999139	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	1908629	92999139	53364883	347	140127											
KIAA1429	25962	broad.mit.edu	37	chr8	95531312	95531312	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctgatcttcccacaggaTtaaaagtaatcaaataaaga	6	8	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95531312	A	A	95531312	3	1	171	1	0	0	0	0	1	0	0	0	8301	1493	52	5	3142	5	KIAA1429	8	95531312	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	2532173	95531312	50832710	348	140128											
UBR5	51366	broad.mit.edu	37	chr8	103289440	103289440	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctatgaatatttacatttaAaagttacaaatgaagggaaa	6	4	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103289440	G	G	103289440	1	3	171	0	1	0	0	0	0	0	0	0	17031	29	1	5		5	UBR5	8	103289440	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	7758128	103289440	43074582	349	140129											
RIMS2	9699	broad.mit.edu	37	chr8	104897787	104897787	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggaaagcagagatgaataCgaaaggcaaaggagagagga	16	3	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104897787	G	G	104897787	4	3	171	1	0	0	0	0	0	1	0	0	13479	547	19	4	1100	4	RIMS2	8	104897787	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1608347	104897787	41466235	350	140130											
TM7SF4	81501	broad.mit.edu	37	chr8	105361895	105361895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacctcccgaggcagggCagtggctcattcacctttgc	11	13	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105361895	A	A	105361895	1	1	171	0	1	0	0	0	0	0	0	0	16099	725	25	3		3	TM7SF4	8	105361895	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	464108	105361895	41002127	351	140131											
CSMD3	114788	broad.mit.edu	37	chr8	113650903	113650903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaagttactgaatgagccCttttgttttttattttctca	5	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113650903	T	T	113650903	1	4	171	0	1	0	0	0	0	0	0	0	3980	696	24	4		4	CSMD3	8	113650903	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	8289008	113650903	32713119	352	140132											
CSMD3	114788	broad.mit.edu	37	chr8	114326964	114326964	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatatccatatggaaaaccAgggctttctatagtgccatt	9	8	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114326964	T	T	114326964	2	4	171	1	0	0	0	0	0	0	0	1	3980	175	7	5		5	CSMD3	8	114326964	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	676061	114326964	32037058	353	140133											
CSMD3	114788	broad.mit.edu	37	chr8	114448956	114448956	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaggttccaaaacgtaaatCcacttttaatccccattttc	4	12	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114448956	A	A	114448956	3	1	171	1	0	0	0	0	1	0	0	0	3980	855	30	3	11341	3	CSMD3	8	114448956	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	121992	114448956	31915066	354	140134											
TNFRSF11B	4982	broad.mit.edu	37	chr8	119936780	119936780	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgagtgctttagtgcgtGcattaggcccttcaaggtgt	12	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119936780	T	T	119936780	3	4	171	1	0	0	0	0	1	0	0	0	16408	1319	46	3	170	3	TNFRSF11B	8	119936780	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	5487824	119936780	26427242	355	140135											
FAM91A1	157769	broad.mit.edu	37	chr8	124789603	124789603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggtaatgtttaggttGtgtctttgtgcatcctgtca	11	5	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124789603	T	T	124789603	1	4	171	0	1	0	0	0	0	0	0	0	5708	1392	48	3		3	FAM91A1	8	124789603	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	4852823	124789603	21574419	356	140136											
FER1L6	654463	broad.mit.edu	37	chr8	125052164	125052164	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctcacatgtaccaagccCggggcctcatcgcagctgac	12	15	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125052164	A	A	125052164	2	1	171	1	0	0	0	0	0	0	0	1	5872	643	23	1		1	FER1L6	8	125052164	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	262561	125052164	21311858	357	140137											
OC90	729330	broad.mit.edu	37	chr8	133053357	133053357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcggggtcttggagacagtCcatctcagcggcctcctcat	13	13	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133053357	A	A	133053357	3	1	171	1	0	0	0	0	1	0	0	0	10909	855	30	3	1078	3	OC90	8	133053357	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	8001193	133053357	13310665	358	140138											
FAM135B	51059	broad.mit.edu	37	chr8	139180172	139180172	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccacgtatctgtcctcaaaGatcaccggcagggtgttcca	9	13	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139180172	C	C	139180172	3	2	171	1	0	0	0	0	1	0	0	0	5495	932	33	4	3032	4	FAM135B	8	139180172	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	6126815	139180172	7183850	359	140139											
FAM135B	51059	broad.mit.edu	37	chr8	139209829	139209829	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagacggagaccccggtaAgcgtggaggagcaacaggca	17	9	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139209829	T	T	139209829	2	4	171	1	0	0	0	0	0	0	0	1	5495	59	3	5		5	FAM135B	8	139209829	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	29657	139209829	7154193	360	140140											
BAI1	575	broad.mit.edu	37	chr8	143559682	143559682	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcggagtgccagggccacTgggtggagacccgagactgc	18	11	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143559682	A	A	143559682	3	1	171	1	0	0	0	0	1	0	0	0	1303	1580	55	5	1544	5	BAI1	8	143559682	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	4349853	143559682	2804340	361	140141											
GML	2765	broad.mit.edu	37	chr8	143921845	143921845	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcaggtccaggctcctgCgtgaagtgatgctcctcttt	10	13	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143921845	A	A	143921845	1	1	171	0	1	0	0	0	0	0	0	0	6556	783	27	3		3	GML	8	143921845	5'UTR	SNP	C	TCGA-50-6593-01A-11D-1753-08	362163	143921845	2442177	362	140142											
GPIHBP1	338328	broad.mit.edu	37	chr8	144297010	144297010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggaacaccggtaagtggGcgtggggccgcagcacacgc	17	12	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144297010	T	T	144297010	1	4	171	0	1	0	0	0	0	0	0	0	6677	1218	42	3		3	GPIHBP1	8	144297010	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	375165	144297010	2067012	363	140143											
TOP1MT	116447	broad.mit.edu	37	chr8	144407573	144407573	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttcagcatccccatcTtgggatggtcgccacggcca	9	15	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144407573	G	G	144407573	3	3	171	1	0	0	0	0	1	0	0	0	16488	1609	56	5	1231	5	TOP1MT	8	144407573	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	110563	144407573	1956449	364	140144											
ZC3H3	23144	broad.mit.edu	37	chr8	144620288	144620288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctactgctggtctgtcccCcgacggggacctagacagga	12	14	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144620288	A	A	144620288	3	1	171	1	0	0	0	0	1	0	0	0	17695	623	22	2	1641	2	ZC3H3	8	144620288	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	212715	144620288	1743734	365	140145											
ZC3H3	23144	broad.mit.edu	37	chr8	144621362	144621362	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaagagtagcccctccGgcttggacgagggtagcggg	19	9	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144621362	C	C	144621362	3	2	171	1	0	0	0	0	1	0	0	0	17695	1115	39	4	2715	4	ZC3H3	8	144621362	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1074	144621362	1742660	366	140146											
GRINA	2907	broad.mit.edu	37	chr8	145065687	145065687	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctacccccaagggggctAcccccaggggccatatcccc	9	21	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145065687	T	T	145065687	3	4	171	1	0	0	0	0	1	0	0	0	6851	391	14	5	298	5	GRINA	8	145065687	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	444325	145065687	1298335	367	140147											
KIAA1432	57589	broad.mit.edu	37	chr9	5772720	5772720	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggccagtaaagggcctcAtaaatcccaggtccagcttc	10	12	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5772720	C	C	5772720	3	2	171	1	0	0	0	0	1	0	0	0	8303	217	8	5	3700	5	KIAA1432	9	5772720	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08		5772720	135440711	368	140148											
PTPRD	5789	broad.mit.edu	37	chr9	8449818	8449818	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggtatgctgctttttctagAgtcggactctgccctcttcc	9	13	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8449818	T	T	8449818	3	4	171	1	0	0	0	0	1	0	0	0	12907	304	11	5	1941	5	PTPRD	9	8449818	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	2677098	8449818	132763613	369	140149											
PSIP1	11168	broad.mit.edu	37	chr9	15506708	15506708	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttatctgaataaacaagaGcacaacatccaaaagggttc	6	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15506708	A	A	15506708	1	1	171	0	1	0	0	0	0	0	0	0	12769	986	34	4		4	PSIP1	9	15506708	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	7056890	15506708	125706723	370	140150											
DENND4C	55667	broad.mit.edu	37	chr9	19345883	19345883	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aataaaagttaacttggaaaAtaggttcattgttaatattt	6	2	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19345883	G	G	19345883	1	3	171	0	1	0	0	0	0	0	0	0	4475	116	4	5		5	DENND4C	9	19345883	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	3839175	19345883	121867548	371	140151											
KIAA1797	54914	broad.mit.edu	37	chr9	20981356	20981356	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcaaacacagtgatgatGtacaggttttgaacattgca	8	9	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20981356	A	A	20981356	1	1	171	0	1	0	0	0	0	0	0	0	8328	1392	48	4		4	KIAA1797	9	20981356	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1635473	20981356	120232075	372	140152											
C9orf72	203228	broad.mit.edu	37	chr9	27558365	27558365	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtgcagaactgtgtaaagGaagtcagtctctgggcatgt	13	6	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27558365	A	A	27558365	1	1	171	0	1	0	0	0	0	0	0	0	2521	1189	41	4		4	C9orf72	9	27558365	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	6577009	27558365	113655066	373	140153											
ACO1	48	broad.mit.edu	37	chr9	32408496	32408496	+	Intron	DEL	C	-	-													ggcttattttctgcattattCtctttcttctcttaggggtg					rs10123372	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32408496	-	-	32408496	6	5	171	0	1	1	0	1	0	0	0	0	146	928	32	0		0	ACO1	9	32408496	Intron	DEL	C	TCGA-50-6593-01A-11D-1753-08	4850131	32408496	108804935	374	140154											
TAF1L	138474	broad.mit.edu	37	chr9	32635336	32635336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcaattcttcatttgccGtgagttcagtgattaggctg	10	8	4	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32635336	T	T	32635336	3	4	171	1	0	0	0	0	1	0	0	0	15642	1145	40	3	5242	3	TAF1L	9	32635336	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	226840	32635336	108578095	375	140155											
PIP5K1B	8395	broad.mit.edu	37	chr9	71509280	71509280	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccagaatccaaggactcTtttgccaaaattttacggac	6	10	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71509280	C	C	71509280	3	2	171	1	0	0	0	0	1	0	0	0	12035	1609	56	5	515	5	PIP5K1B	9	71509280	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	38873944	71509280	69704151	376	140156											
TRPM6	140803	broad.mit.edu	37	chr9	77436681	77436681	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtccttgtccttgacagtcTcccacactgacaggatgacg	10	13	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77436681	G	G	77436681	3	3	171	1	0	0	0	0	1	0	0	0	16715	1551	54	5	5282	5	TRPM6	9	77436681	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	5927401	77436681	63776750	377	140157											
TRPM6	140803	broad.mit.edu	37	chr9	77457061	77457061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaagaaaccagcaaaaCaatttgggttattagcaaac	7	6	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77457061	A	A	77457061	1	1	171	0	1	0	0	0	0	0	0	0	16715	493	17	3		3	TRPM6	9	77457061	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	20380	77457061	63756370	378	140158											
VPS13A	23230	broad.mit.edu	37	chr9	79890421	79890422	+	Nonsense_Mutation	DNP	GG	CT	CT													ctgtgaaatgtagattcagaGgaggaattttttgatgcacc							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	79890422	CT	CT	79890421	4	2	171	1	0	0	0	0	0	1	0	0	17316	991	35	4	2618	4	VPS13A	9	79890421	Nonsense_Mutation	DNP	GG	TCGA-50-6593-01A-11D-1753-08	2433360	79890421	61323010	379	140159											
VPS13A	23230	broad.mit.edu	37	chr9	79908412	79908412	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttttgtcacgaaatttctAtattctatattggtaagtat	6	4	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79908412	G	G	79908412	2	3	171	1	0	0	0	0	0	0	0	1	17316	436	16	5		5	VPS13A	9	79908412	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	17991	79908412	61305019	380	140160											
TLE4	7091	broad.mit.edu	37	chr9	82337955	82337955	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagtatattccaggtaaCatggaacttgttaactacca	8	9	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82337955	T	T	82337955	1	4	171	0	1	0	0	0	0	0	0	0	16064	493	17	4		4	TLE4	9	82337955	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2429543	82337955	58875476	381	140161											
FLJ46321	389763	broad.mit.edu	37	chr9	84606402	84606402	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgggtcatccacctcTgccccaacaatcaaaggcat	8	14	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84606402	C	C	84606402	2	2	171	1	0	0	0	0	0	0	0	1	5990	1567	55	5		5	FLJ46321	9	84606402	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	2268447	84606402	56607029	382	140162											
C9orf3	84909	broad.mit.edu	37	chr9	97823056	97823056	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccgaactctgcaaagcctCcagaggacataccacctcca	6	18	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97823056	A	A	97823056	2	1	171	1	0	0	0	0	0	0	0	1	2503	842	30	3		3	C9orf3	9	97823056	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	13216654	97823056	43390375	383	140163											
GABBR2	9568	broad.mit.edu	37	chr9	101304342	101304342	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgaaaaacacaaaagAgacaacgctttttactgatg	7	7	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101304342	T	T	101304342	1	4	171	0	1	0	0	0	0	0	0	0	6216	319	11	5		5	GABBR2	9	101304342	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	3481286	101304342	39909089	384	140164											
OR13C8	138802	broad.mit.edu	37	chr9	107331444	107331444	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgttggagatcagtatatGtaatatggaaaggaccaacg	11	5	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107331444	C	C	107331444	1	2	171	0	1	0	0	0	0	0	0	0	11032	1392	48	4		4	OR13C8	9	107331444	5'Flank	SNP	G	TCGA-50-6593-01A-11D-1753-08	6027102	107331444	33881987	385	140165											
KIF12	113220	broad.mit.edu	37	chr9	116858525	116858525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggggacttgggagggacCgtccccatcaaagccacaag	13	12	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116858525	T	T	116858525	1	4	171	0	1	0	0	0	0	0	0	0	8343	667	23	4		4	KIF12	9	116858525	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	9527081	116858525	24354906	386	140166											
ASTN2	23245	broad.mit.edu	37	chr9	119976834	119976834	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacggaattgtgggtttgcAgccgggatgaacggaagctc	16	7	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119976834	T	T	119976834	3	4	171	1	0	0	0	0	1	0	0	0	1069	188	7	5	3360	5	ASTN2	9	119976834	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	3118309	119976834	21236597	387	140167											
SLC2A8	29988	broad.mit.edu	37	chr9	130160593	130160593	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccattttacactgaggtcAtgacatgcagtctcggaaag	9	10	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130160593	T	T	130160593	1	4	171	0	1	0	0	0	0	0	0	0	14665	232	8	5		5	SLC2A8	9	130160593	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	10183759	130160593	11052838	388	140168											
ENG	2022	broad.mit.edu	37	chr9	130586661	130586661	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaaggacatgagcagctcCgggctacaagtgtccttggg	13	10	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130586661	G	G	130586661	2	3	171	1	0	0	0	0	0	0	0	1	5159	639	23	4		4	ENG	9	130586661	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	426068	130586661	10626770	389	140169											
LRRC8A	56262	broad.mit.edu	37	chr9	131670205	131670205	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagttccggacccatgtGgaggagggggacattgtgta	16	6	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131670205	T	T	131670205	2	4	171	1	0	0	0	0	0	0	0	1	9108	1335	47	2		2	LRRC8A	9	131670205	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	1083544	131670205	9543226	390	140170											
RAPGEF1	2889	broad.mit.edu	37	chr9	134454756	134454756	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccgcccggccccgctgaGggctggccagcctcatggct	13	19	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134454756	A	A	134454756	1	1	171	0	1	0	0	0	0	0	0	0	13151	1015	35	4		4	RAPGEF1	9	134454756	3'UTR	SNP	G	TCGA-50-6593-01A-11D-1753-08	2784551	134454756	6758675	391	140171											
CCDC3	83643	broad.mit.edu	37	chr10	13040235	13040235	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgctaatactctctgatcTgggcttttggaagagtattc	9	8	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13040235	C	C	13040235	1	2	171	0	1	0	0	0	0	0	0	0	2831	1595	55	5		5	CCDC3	10	13040235	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08		13040235	122494512	392	140172											
CUBN	8029	broad.mit.edu	37	chr10	16942697	16942697	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgagttaaaagtcacgacCagctgattggaacctgactg	10	9	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16942697	A	A	16942697	2	1	171	1	0	0	0	0	0	0	0	1	4084	581	21	2		2	CUBN	10	16942697	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	3902462	16942697	118592050	393	140173											
NEBL	10529	broad.mit.edu	37	chr10	21317950	21317950	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcctcagcaaaaaagaCgaataagaagaggaaaacta	11	7	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21317950	A	A	21317950	1	1	171	0	1	0	0	0	0	0	0	0	10398	551	19	3		3	NEBL	10	21317950	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	4375253	21317950	114216797	394	140174											
MYO3A	53904	broad.mit.edu	37	chr10	26462618	26462618	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcgtgaagaaacaagcagAaaatgcaatctctgctaatg	8	7	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26462618	T	T	26462618	3	4	171	1	0	0	0	0	1	0	0	0	10170	246	9	5	3535	5	MYO3A	10	26462618	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	5144668	26462618	109072129	395	140175											
GAD2	2572	broad.mit.edu	37	chr10	26575229	26575229	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaccaatataaatctaaTaagtagtcagtagaatttcc	4	6	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26575229	A	A	26575229	1	1	171	0	1	0	0	0	0	0	0	0	6240	1421	49	5		5	GAD2	10	26575229	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	112611	26575229	108959518	396	140176											
LRRC18	474354	broad.mit.edu	37	chr10	50121502	50121502	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattgggaaagatggtcttTctcggtgtcgtcgtggccat	14	7	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50121502	C	C	50121502	2	2	171	1	0	0	0	0	0	0	0	1	9061	1780	62	5		5	LRRC18	10	50121502	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	23546273	50121502	85413245	397	140177											
DRGX	644168	broad.mit.edu	37	chr10	50599213	50599213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatcaacgttggtacctgCtgaagagtgaacgtcgtccg	12	9	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50599213	A	A	50599213	3	1	171	1	0	0	0	0	1	0	0	0	4803	796	28	3	681	3	DRGX	10	50599213	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	477711	50599213	84935534	398	140178											
PARG	8505	broad.mit.edu	37	chr10	51480445	51480445	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaatcaagagagacatcCttttatgtcaaactgtcaat	6	7	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51480445	G	G	51480445	1	3	171	0	1	0	0	0	0	0	0	0	11542	696	24	4		4	PARG	10	51480445	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	881232	51480445	84054302	399	140179											
ASAH2B	653308	broad.mit.edu	37	chr10	52502843	52502843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtatgtgtctgtgtctgGgtaagagggaagtgaaagag	16	3	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52502843	T	T	52502843	1	4	171	0	1	0	0	0	0	0	0	0	1012	1247	43	2		2	ASAH2B	10	52502843	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1022398	52502843	83031904	400	140180											
ZWINT	11130	broad.mit.edu	37	chr10	58119843	58119843	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcctgagccaggatgttCtgcaggaaatccgctacctg	10	13	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58119843	A	A	58119843	3	1	171	1	0	0	0	0	1	0	0	0	18378	912	32	3	665	3	ZWINT	10	58119843	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	5617000	58119843	77414904	401	140181											
FAM13C	220965	broad.mit.edu	37	chr10	61083990	61083990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacattctgctgattgtaGtgtgggaagggagccaattc	12	7	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61083990	T	T	61083990	1	4	171	0	1	0	0	0	0	0	0	0	5500	1044	36	3		3	FAM13C	10	61083990	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2964147	61083990	74450757	402	140182											
CDH23	64072	broad.mit.edu	37	chr10	73490369	73490369	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccgagactctggtgaggcTggcaggaggaagccggggat	19	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73490369	A	A	73490369	1	1	171	0	1	0	0	0	0	0	0	0	3138	1595	55	5		5	CDH23	10	73490369	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	12406379	73490369	62044378	403	140183											
VCL	7414	broad.mit.edu	37	chr10	75874084	75874084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcagatgaggtgactcGgttggccaaggaggttgcca	16	9	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75874084	T	T	75874084	3	4	171	1	0	0	0	0	1	0	0	0	17266	1116	39	1	3170	1	VCL	10	75874084	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2383715	75874084	59660663	404	140184											
SH2D4B	387694	broad.mit.edu	37	chr10	82369203	82369203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgggagcgcccgctgcGcccagtctccagagatgtca	13	15	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82369203	T	T	82369203	3	4	171	1	0	0	0	0	1	0	0	0	14349	1087	38	3	947	3	SH2D4B	10	82369203	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	6495119	82369203	53165544	405	140185											
FAM190B	54462	broad.mit.edu	37	chr10	86259667	86259667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttctctccttggcagGgctccttccaggggatccca	9	17	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86259667	T	T	86259667	3	4	171	1	0	0	0	0	1	0	0	0	5569	1232	43	2	2396	2	FAM190B	10	86259667	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	3890464	86259667	49275080	406	140186											
PLCE1	51196	broad.mit.edu	37	chr10	95892185	95892185	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggccttctcagtactttTggaggatccactggacgaat	11	9	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95892185	A	A	95892185	3	1	171	1	0	0	0	0	1	0	0	0	12129	1809	63	5	1753	5	PLCE1	10	95892185	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	9632518	95892185	39642562	407	140187											
ARHGAP19	84986	broad.mit.edu	37	chr10	98985923	98985923	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaagagcgttagacatGttcttaaatatttctttttg	6	5	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98985923	C	C	98985923	1	2	171	0	1	0	0	0	0	0	0	0	871	1392	48	4		4	ARHGAP19	10	98985923	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3093738	98985923	36548824	408	140188											
CNNM1	26507	broad.mit.edu	37	chr10	101090479	101090479	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcatgctgcgctcagaCgcggtgctcgacttcgccac	11	15	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101090479	T	T	101090479	2	4	171	1	0	0	0	0	0	0	0	1	3644	535	19	4		4	CNNM1	10	101090479	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	2104556	101090479	34444268	409	140189											
WNT8B	7479	broad.mit.edu	37	chr10	102242208	102242208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcaacagcgcggccggcCgcggcgccatcgccgacacc	14	19	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102242208	T	T	102242208	3	4	171	1	0	0	0	0	1	0	0	0	17524	652	23	4	713	4	WNT8B	10	102242208	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1151729	102242208	33292539	410	140190											
NEURL	9148	broad.mit.edu	37	chr10	105330655	105330655	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgggggccccttccccgtcActtctcaccgatgccaccac	8	20	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105330655	G	G	105330655	3	3	171	1	0	0	0	0	1	0	0	0	10440	159	6	5	118	5	NEURL	10	105330655	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	3088447	105330655	30204092	411	140191											
SORCS1	114815	broad.mit.edu	37	chr10	108438960	108438960	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagatttgaaccaagctgGgcaatttttatgttacttaa	7	8	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108438960	T	T	108438960	1	4	171	0	1	0	0	0	0	0	0	0	15044	1247	43	2		2	SORCS1	10	108438960	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3108305	108438960	27095787	412	140192											
XPNPEP1	7511	broad.mit.edu	37	chr10	111628590	111628590	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taactgggagccaagaagtgGtgagctggtcaccacttttc	12	9	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111628590	C	C	111628590	1	2	171	0	1	0	0	0	0	0	0	0	17569	1276	44	4		4	XPNPEP1	10	111628590	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3189630	111628590	23906157	413	140193											
VAX1	11023	broad.mit.edu	37	chr10	118896116	118896116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgcgcgtcctcttaggcCggtccaagtccaggcccttg	12	15	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118896116	A	A	118896116	3	1	171	1	0	0	0	0	1	0	0	0	17261	652	23	1	856	1	VAX1	10	118896116	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	7267526	118896116	16638631	414	140194											
CPXM2	119587	broad.mit.edu	37	chr10	125521558	125521558	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggggtgtgttcctgcGtcttccagggggaccgcacc	18	11	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125521558	A	A	125521558	3	1	171	1	0	0	0	0	1	0	0	0	3870	1145	40	4	679	4	CPXM2	10	125521558	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	6625442	125521558	10013189	415	140195											
MMP21	118856	broad.mit.edu	37	chr10	127459199	127459199	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacagccacttgtcacataCatggtgcaaaacttatattt	5	9	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127459199	T	T	127459199	1	4	171	0	1	0	0	0	0	0	0	0	9753	493	17	4		4	MMP21	10	127459199	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1937641	127459199	8075548	416	140196											
GPR123	84435	broad.mit.edu	37	chr10	134896241	134896241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccctgacacgcagagtcCgccccacagtacaggccgac	10	18	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134896241	A	A	134896241	1	1	171	0	1	0	0	0	0	0	0	0	6702	667	23	1		1	GPR123	10	134896241	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	7437042	134896241	638506	417	140197											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651183	1651183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctctggctgtgggggctGtggctccggctgtggaggct	20	9	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1651183	T	T	1651183	3	4	171	1	0	0	0	0	1	0	0	0	8636	1377	48	3	115	3	KRTAP5-5	11	1651183	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08		1651183	133355333	418	140198											
OSBPL5	114879	broad.mit.edu	37	chr11	3121425	3121425	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatggtaagggtgtaatcCtcggctcggttcaggaaggt	16	7	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3121425	T	T	3121425	2	4	171	1	0	0	0	0	0	0	0	1	11374	680	24	4		4	OSBPL5	11	3121425	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	1470242	3121425	131885091	419	140199											
HBG2	3048	broad.mit.edu	37	chr11	5592781	5592781	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccacaaccactgaagtttCctccatgaccaaagttgtca	5	14	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5592781	A	A	5592781	1	1	171	0	1	0	0	0	0	0	0	0	7049	870	30	3		3	HBG2	11	5592781	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2471356	5592781	129413735	420	140200											
TEAD1	7003	broad.mit.edu	37	chr11	12886397	12886397	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcaggtgtctagtcacAttcaggttcttgccagaagg	11	11	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12886397	G	G	12886397	3	3	171	1	0	0	0	0	1	0	0	0	15860	217	8	5	290	5	TEAD1	11	12886397	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	7293616	12886397	122120119	421	140201											
LIN7C	55327	broad.mit.edu	37	chr11	27522982	27522982	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttattatgaatttaataactCcatattttaaacttctaatt	1	5	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27522982	A	A	27522982	1	1	171	0	1	0	0	0	0	0	0	0	8885	870	30	3		3	LIN7C	11	27522982	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	14636585	27522982	107483534	422	140202											
DGKZ	8525	broad.mit.edu	37	chr11	46389247	46389247	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggttcgagaccaacgtgTccggggacttctgctacgtt	12	11	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46389247	G	G	46389247	3	3	171	1	0	0	0	0	1	0	0	0	4514	1667	58	5	1337	5	DGKZ	11	46389247	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	18866265	46389247	88617269	423	140203											
OR4A16	81327	broad.mit.edu	37	chr11	55111517	55111517	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caattatcacactcatgttgAatcctttaatatactcgttg	4	9	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55111517	G	G	55111517	3	3	171	1	0	0	0	0	1	0	0	0	11135	246	9	5	843	5	OR4A16	11	55111517	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	8722270	55111517	79894999	424	140204											
OR5D13	390142	broad.mit.edu	37	chr11	55540864	55540864	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctatctcttttttcctatcCagttctgcttttcaagaata	3	11	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55540864	T	T	55540864	1	4	171	0	1	0	0	0	0	0	0	0	11248	609	21	4		4	OR5D13	11	55540864	5'Flank	SNP	C	TCGA-50-6593-01A-11D-1753-08	429347	55540864	79465652	425	140205											
OR8H1	219469	broad.mit.edu	37	chr11	56057612	56057612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctattttaattacctggaGtcctgtcttctctgcatgac	7	10	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56057612	T	T	56057612	3	4	171	1	0	0	0	0	1	0	0	0	11331	1020	36	3	10	3	OR8H1	11	56057612	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	516748	56057612	78948904	426	140206											
OR5M8	219484	broad.mit.edu	37	chr11	56258326	56258326	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtccgcacagtagaagtgaTtaatttcattggggccacag	12	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56258326	A	A	56258326	3	1	171	1	0	0	0	0	1	0	0	0	11270	1493	52	5	418	5	OR5M8	11	56258326	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	200714	56258326	78748190	427	140207											
OR4D6	219983	broad.mit.edu	37	chr11	59225048	59225048	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatctctaacaacggactGgtgaccctgctctggttcct	9	12	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59225048	T	T	59225048	2	4	171	1	0	0	0	0	0	0	0	1	11152	1335	47	2		2	OR4D6	11	59225048	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	2966722	59225048	75781468	428	140208											
MS4A2	2206	broad.mit.edu	37	chr11	59860249	59860249	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actcattgtggcttttttttCctcctttttgaacagttttc	5	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59860249	T	T	59860249	1	4	171	0	1	0	0	0	0	0	0	0	9954	870	30	4		4	MS4A2	11	59860249	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	635201	59860249	75146267	429	140209											
MS4A4A	51338	broad.mit.edu	37	chr11	60075571	60075571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctttggcattctgattGtttcacaggttgtgttaatt	8	7	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60075571	T	T	60075571	1	4	171	0	1	0	0	0	0	0	0	0	9956	1392	48	3		3	MS4A4A	11	60075571	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	215322	60075571	74930945	430	140210											
MS4A1	931	broad.mit.edu	37	chr11	60235910	60235910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctccccaagatcaggaatCctcaccaatagaaaatgaca	5	13	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60235910	A	A	60235910	3	1	171	1	0	0	0	0	1	0	0	0	9948	855	30	3	885	3	MS4A1	11	60235910	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	160339	60235910	74770606	431	140211											
C11orf9	745	broad.mit.edu	37	chr11	61541490	61541490	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcttcaacttttcggtGggcgacgacgcctttgtgtg	14	9	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61541490	T	T	61541490	2	4	171	1	0	0	0	0	0	0	0	1	1683	1335	47	2		2	C11orf9	11	61541490	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	1305580	61541490	73465026	432	140212											
HNRNPUL2	221092	broad.mit.edu	37	chr11	62488849	62488849	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaggcttgctgaactaaaAggtctcggcttttggggtcc	15	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62488849	T	T	62488849	3	4	171	1	0	0	0	0	1	0	0	0	7342	72	3	5	738	5	HNRNPUL2	11	62488849	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	947359	62488849	72517667	433	140213											
ATG2A	23130	broad.mit.edu	37	chr11	64678617	64678617	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaactcggtgaaaaagtgCgtggcgaggtcaggtggtcc	15	8	2	1	rs151243555		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64678617	A	A	64678617	2	1	171	1	0	0	0	0	0	0	0	1	1097	755	27	3		3	ATG2A	11	64678617	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	2189768	64678617	70327899	434	140214											
SNX15	29907	broad.mit.edu	37	chr11	64795119	64795119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccgcgcaggtgaggtgggGcccagcgcgtactttaccct	14	13	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64795119	T	T	64795119	1	4	171	0	1	0	0	0	0	0	0	0	15000	1218	42	3		3	SNX15	11	64795119	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	116502	64795119	70211397	435	140215											
MMP27	64066	broad.mit.edu	37	chr11	102565698	102565698	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgggatgggccaggttacCtttaaaaaccagaatcttat	9	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102565698	T	T	102565698	3	4	171	1	0	0	0	0	1	0	0	0	9758	695	24	4	524	4	MMP27	11	102565698	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	37770579	102565698	32440818	436	140216											
DDI1	414301	broad.mit.edu	37	chr11	103907640	103907640	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactttgagctccgaaacttCaaggtcctctgcgaagcgga	11	11	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103907640	A	A	103907640	3	1	171	1	0	0	0	0	1	0	0	0	4361	825	29	3	92	3	DDI1	11	103907640	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1341942	103907640	31098876	437	140217											
CASP5	838	broad.mit.edu	37	chr11	104878093	104878093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagactcctttaactatGggcacagcttaaagagttct	8	8	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104878093	T	T	104878093	1	4	171	0	1	0	0	0	0	0	0	0	2700	1363	47	2		2	CASP5	11	104878093	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	970453	104878093	30128423	438	140218											
GRIA4	2893	broad.mit.edu	37	chr11	105795003	105795003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaggcttatacattgttgGcactccaaaaataaatgtag	7	7	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105795003	T	T	105795003	1	4	171	0	1	0	0	0	0	0	0	0	6836	1218	42	3		3	GRIA4	11	105795003	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	916910	105795003	29211513	439	140219											
CADM1	23705	broad.mit.edu	37	chr11	115080337	115080337	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggtggtggtggtggtGgtggtggttgttgtgggagg	26	0	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115080337	A	A	115080337	2	1	171	1	0	0	0	0	0	0	0	1	2592	1335	47	4		4	CADM1	11	115080337	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	9285334	115080337	19926179	440	140220											
CEP164	22897	broad.mit.edu	37	chr11	117267237	117267237	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtctgcttttgctacactCagtggacttttctaccatgt	8	10	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117267237	T	T	117267237	1	4	171	0	1	0	0	0	0	0	0	0	3279	841	29	4		4	CEP164	11	117267237	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2186900	117267237	17739279	441	140221											
OAF	220323	broad.mit.edu	37	chr11	120097542	120097542	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaaatccccgggcagtGcggcaggcggaggaggttcg	17	10	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120097542	A	A	120097542	2	1	171	1	0	0	0	0	0	0	0	1	10893	1306	46	4		4	OAF	11	120097542	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	2830305	120097542	14908974	442	140222											
SCN3B	55800	broad.mit.edu	37	chr11	123524448	123524448	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggcatggcgaggtgctggTacttaccccagtagataagc	13	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123524448	A	A	123524448	1	1	171	0	1	0	0	0	0	0	0	0	14032	1653	57	5		5	SCN3B	11	123524448	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	3426906	123524448	11482068	443	140223											
OR10G9	219870	broad.mit.edu	37	chr11	123894188	123894188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctctctgcactctgctGtccagaccatattgactttc	8	13	2	2	rs144713433		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123894188	T	T	123894188	3	4	171	1	0	0	0	0	1	0	0	0	10998	1377	48	3	471	3	OR10G9	11	123894188	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	369740	123894188	11112328	444	140224											
ROBO4	54538	broad.mit.edu	37	chr11	124761606	124761606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggcatccgcccccagcCgactgctgaggctgctgctg	13	18	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124761606	A	A	124761606	3	1	171	1	0	0	0	0	1	0	0	0	13627	652	23	1	1415	1	ROBO4	11	124761606	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	867418	124761606	10244910	445	140225											
CCDC15	80071	broad.mit.edu	37	chr11	124857203	124857203	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtgttaagccagataccCaggctgttgaaatgaaggtt	12	6	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124857203	T	T	124857203	4	4	171	1	0	0	0	0	0	1	0	0	2810	595	21	4	1107	4	CCDC15	11	124857203	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	95597	124857203	10149313	446	140226											
NFRKB	4798	broad.mit.edu	37	chr11	129751924	129751924	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctcaagctatagaccattCaggatttgaacactttgaaa	6	8	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129751924	A	A	129751924	1	1	171	0	1	0	0	0	0	0	0	0	10479	841	29	3		3	NFRKB	11	129751924	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	4894721	129751924	5254592	447	140227											
ST14	6768	broad.mit.edu	37	chr11	130064043	130064043	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgccctctgcccccacaGgttgtgtggcacctaccctc	9	20	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130064043	T	T	130064043	5	4	171	1	0	0	0	0	0	0	1	0	15329	1014	35	2	905	2	ST14	11	130064043	Splice_Site	SNP	G	TCGA-50-6593-01A-11D-1753-08	312119	130064043	4942473	448	140228											
NCAPD3	23310	broad.mit.edu	37	chr11	134050952	134050952	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaagcgaaaagaatggtTaggaaaagcagtcgcttacc	12	6	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134050952	A	A	134050952	1	1	171	0	1	0	0	0	0	0	0	0	10301	1769	61	5		5	NCAPD3	11	134050952	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	3986909	134050952	955564	449	140229											
GALNT8	26290	broad.mit.edu	37	chr12	4873146	4873146	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctattggatgaaaatgtctGcttggatcagggacccgttc	11	9	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4873146	C	C	4873146	3	2	171	1	0	0	0	0	1	0	0	0	6281	1319	46	4	1560	4	GALNT8	12	4873146	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08		4873146	128978749	450	140230											
CD163L1	283316	broad.mit.edu	37	chr12	7585062	7585062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcagtcatgatttcccCatccacgatgtctgcaattc	7	13	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7585062	A	A	7585062	3	1	171	1	0	0	0	0	1	0	0	0	2998	595	21	2	3709	2	CD163L1	12	7585062	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2711916	7585062	126266833	451	140231											
SLC2A14	144195	broad.mit.edu	37	chr12	7967074	7967074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttgaagaaggtaaaggcCaagaaggtaatgaggaagcc	13	5	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7967074	A	A	7967074	3	1	171	1	0	0	0	0	1	0	0	0	14657	593	21	2	165	2	SLC2A14	12	7967074	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	382012	7967074	125884821	452	140232											
ZNF705A	440077	broad.mit.edu	37	chr12	8329650	8329650	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgattcgggagaagattGcactcacagttccacaataa	8	8	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8329650	A	A	8329650	3	1	171	1	0	0	0	0	1	0	0	0	18235	1319	46	4	392	4	ZNF705A	12	8329650	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	362576	8329650	125522245	453	140233											
CSDA	8531	broad.mit.edu	37	chr12	10868273	10868273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccagcactttgataccCaaccacaatttcctctcacc	4	16	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10868273	A	A	10868273	1	1	171	0	1	0	0	0	0	0	0	0	3961	609	21	2		2	CSDA	12	10868273	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2538623	10868273	122983622	454	140234											
GRIN2B	2904	broad.mit.edu	37	chr12	13768141	13768141	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacagagaagtcgaccacctCcgatcgttcctcattgatgg	9	13	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13768141	T	T	13768141	3	4	171	1	0	0	0	0	1	0	0	0	6846	864	30	4	2921	4	GRIN2B	12	13768141	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2899868	13768141	120083754	455	140235											
SLCO1B3	28234	broad.mit.edu	37	chr12	21033901	21033901	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacaatggaataacttacCtgtcaccttgtctagcagga	9	9	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21033901	T	T	21033901	2	4	171	1	0	0	0	0	0	0	0	1	14838	680	24	4		4	SLCO1B3	12	21033901	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	7265760	21033901	112817994	456	140236											
SLCO1B1	10599	broad.mit.edu	37	chr12	21353667	21353667	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatactaaatactgtattccAagtggtattttattgtgaaa	6	4	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21353667	G	G	21353667	1	3	171	0	1	0	0	0	0	0	0	0	14837	145	5	5		5	SLCO1B1	12	21353667	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	319766	21353667	112498228	457	140237											
ABCC9	10060	broad.mit.edu	37	chr12	21998656	21998656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatcatcaggatgagcaGgaagaatcctccagatgtca	10	8	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21998656	T	T	21998656	3	4	171	1	0	0	0	0	1	0	0	0	59	991	35	2	1874	2	ABCC9	12	21998656	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	644989	21998656	111853239	458	140238											
ADAMTS20	80070	broad.mit.edu	37	chr12	43840391	43840391	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatctagaaacaaatacacAacttaccataatgagaactg	4	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43840391	G	G	43840391	1	3	171	0	1	0	0	0	0	0	0	0	266	145	5	5		5	ADAMTS20	12	43840391	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	21841735	43840391	90011504	459	140239											
OR10A7	121364	broad.mit.edu	37	chr12	55615682	55615682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaccccatcatctacggcCtgaggaacaatgaagtgaaa	8	10	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55615682	A	A	55615682	3	1	171	1	0	0	0	0	1	0	0	0	10989	680	24	2	876	2	OR10A7	12	55615682	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	11775291	55615682	78236213	460	140240											
OR6C70	390327	broad.mit.edu	37	chr12	55863608	55863608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaaattctgtaaccccCaagaatatgtaaaaaaacaa	5	7	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55863608	A	A	55863608	3	1	171	1	0	0	0	0	1	0	0	0	11291	593	21	2	625	2	OR6C70	12	55863608	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	247926	55863608	77988287	461	140241											
LRP1	4035	broad.mit.edu	37	chr12	57595378	57595378	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacaatgactgtgtggatGgcagtgatgagcccgccaac	15	9	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57595378	A	A	57595378	3	1	171	1	0	0	0	0	1	0	0	0	9038	1348	47	4	10706	4	LRP1	12	57595378	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1731770	57595378	76256517	462	140242											
MON2	23041	broad.mit.edu	37	chr12	62981934	62981934	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagaaaactcagcctgagaAtggtaagtgcttagaaacag	10	6	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62981934	G	G	62981934	3	3	171	1	0	0	0	0	1	0	0	0	9794	101	4	5	5122	5	MON2	12	62981934	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	5386556	62981934	70869961	463	140243											
POC1B	282809	broad.mit.edu	37	chr12	89860637	89860637	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatcaaaatgtaatcttttGagatttcttttggtaagacc	7	5	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89860637	C	C	89860637	2	2	171	1	0	0	0	0	0	0	0	1	12271	1277	45	4		4	POC1B	12	89860637	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	26878703	89860637	43991258	464	140244											
ANO4	121601	broad.mit.edu	37	chr12	101433897	101433897	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atataaagcttgcacagaatGattagggcagactgtcagct	10	7	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101433897	T	T	101433897	1	4	171	0	1	0	0	0	0	0	0	0	699	1305	45	3		3	ANO4	12	101433897	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	11573260	101433897	32417998	465	140245											
TDG	6996	broad.mit.edu	37	chr12	104378552	104378552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgttatgccatcatccaGtgcaagatgtgctcagtttc	8	10	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104378552	T	T	104378552	3	4	171	1	0	0	0	0	1	0	0	0	15847	1029	36	3	848	3	TDG	12	104378552	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2944655	104378552	29473343	466	140246											
CCDC63	160762	broad.mit.edu	37	chr12	111290731	111290731	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctctgggtacagtgtctgAgtggaggcaaagtgcggttc	15	8	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111290731	T	T	111290731	1	4	171	0	1	0	0	0	0	0	0	0	2862	319	11	5		5	CCDC63	12	111290731	5'UTR	SNP	A	TCGA-50-6593-01A-11D-1753-08	6912179	111290731	22561164	467	140247											
TMEM132B	114795	broad.mit.edu	37	chr12	126138770	126138770	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccattctggtcttcttgatCaactgcgtggcgtttgcctg	11	11	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126138770	G	G	126138770	3	3	171	1	0	0	0	0	1	0	0	0	16169	816	29	4	2785	4	TMEM132B	12	126138770	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	14848039	126138770	7713125	468	140248											
EP400	57634	broad.mit.edu	37	chr12	132498101	132498101	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagctctggaccatggtGcacttcctggtcccagggat	13	12	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132498101	T	T	132498101	2	4	171	1	0	0	0	0	0	0	0	1	5191	1306	46	3		3	EP400	12	132498101	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	6359331	132498101	1353794	469	140249											
EP400	57634	broad.mit.edu	37	chr12	132539519	132539519	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattttttttttttaaatagGcaggaaccattaaaacatca	5	5	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132539519	C	C	132539519	3	2	171	1	0	0	0	0	1	0	0	0	5191	1217	42	4	7896	4	EP400	12	132539519	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	41418	132539519	1312376	470	140250											
IFT88	8100	broad.mit.edu	37	chr13	21166510	21166510	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttagtcagtcaaggggccCtgcttcccctttggaagcca	10	14	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21166510	T	T	21166510	3	4	171	1	0	0	0	0	1	0	0	0	7636	681	24	4	418	4	IFT88	13	21166510	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08		21166510	94003368	471	140251											
C13orf33	84935	broad.mit.edu	37	chr13	31498411	31498411	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtttttttttctttcagtGatggtaataatgcatgcttt	8	4	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31498411	A	A	31498411	1	1	171	0	1	0	0	0	0	0	0	0	1740	1305	45	4		4	C13orf33	13	31498411	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	10331901	31498411	83671467	472	140252											
N4BP2L2	10443	broad.mit.edu	37	chr13	33018246	33018246	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgagcctatgcccagttTtcttcaaaactctttctctg	6	12	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33018246	A	A	33018246	3	1	171	1	0	0	0	0	1	0	0	0	10206	1841	64	5	1842	5	N4BP2L2	13	33018246	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	1519835	33018246	82151632	473	140253											
NBEA	26960	broad.mit.edu	37	chr13	35619056	35619056	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcagctcatgactagagTtcagaataactttattttcc	7	8	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35619056	C	C	35619056	1	2	171	0	1	0	0	0	0	0	0	0	10281	1740	60	5		5	NBEA	13	35619056	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	2600810	35619056	79550822	474	140254											
SETDB2	83852	broad.mit.edu	37	chr13	50042023	50042023	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctatgcctgtgactcagaagGaacaggaaaacaaatccaat	8	9	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50042023	C	C	50042023	3	2	171	1	0	0	0	0	1	0	0	0	14252	1175	41	4	286	4	SETDB2	13	50042023	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	14422967	50042023	65127855	475	140255											
UTP14C	9724	broad.mit.edu	37	chr13	52602691	52602691	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcaggaatttgaagtgAcattcctatcatctgtggaa	9	7	3	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52602691	G	G	52602691	1	3	171	0	1	0	0	0	0	0	0	0	17223	275	10	5		5	UTP14C	13	52602691	5'UTR	SNP	A	TCGA-50-6593-01A-11D-1753-08	2560668	52602691	62567187	476	140256											
PCDH17	27253	broad.mit.edu	37	chr13	58240807	58240807	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttcagtagctccacgttTaaggacccagaaagagccag	9	10	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58240807	A	A	58240807	3	1	171	1	0	0	0	0	1	0	0	0	11606	1751	61	5	2647	5	PCDH17	13	58240807	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	5638116	58240807	56929071	477	140257											
SLITRK1	114798	broad.mit.edu	37	chr13	84454106	84454106	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttaactggtccagcacccCtgccaccgggaggtacatga	12	13	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84454106	T	T	84454106	3	4	171	1	0	0	0	0	1	0	0	0	14856	681	24	4	557	4	SLITRK1	13	84454106	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	26213299	84454106	30715772	478	140258											
DNAJC3	5611	broad.mit.edu	37	chr13	96443247	96443247	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggttcaatcccttcagctCaggcggaccatttagattta	9	10	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96443247	T	T	96443247	3	4	171	1	0	0	0	0	1	0	0	0	4687	838	29	4	1524	4	DNAJC3	13	96443247	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	11989141	96443247	18726631	479	140259											
MYO16	23026	broad.mit.edu	37	chr13	109562326	109562326	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaatactgccatttaacaGaatcacttttcttttcccaa	3	10	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109562326	T	T	109562326	1	4	171	0	1	0	0	0	0	0	0	0	10158	957	33	3		3	MYO16	13	109562326	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	13119079	109562326	5607552	480	140260											
OR4N5	390437	broad.mit.edu	37	chr14	20612416	20612416	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctgtggcccaaaccagctCgataacttcttctgtgatgt	8	11	3	1	rs76001619	byFrequency;by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20612416	A	A	20612416	2	1	171	1	0	0	0	0	0	0	0	1	11173	871	31	3		3	OR4N5	14	20612416	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08		20612416	86737124	481	140261											
OR10G2	26534	broad.mit.edu	37	chr14	22102829	22102829	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggcgagcacagagcttcGggtcagcccacatggtgagc	16	11	1	2	rs57476477	byFrequency;by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22102829	C	C	22102829	3	2	171	1	0	0	0	0	1	0	0	0	10993	1116	39	4	765	4	OR10G2	14	22102829	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1490413	22102829	85246711	482	140262											
EGLN3	112399	broad.mit.edu	37	chr14	34398476	34398476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtagtttatcaacaacCatatttcagctccatttaga	4	9	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34398476	A	A	34398476	1	1	171	0	1	0	0	0	0	0	0	0	5010	609	21	2		2	EGLN3	14	34398476	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	12295647	34398476	72951064	483	140263											
LRFN5	145581	broad.mit.edu	37	chr14	42356586	42356586	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaattgttgtggttgaggcGtctgtccagagaagatgact	14	5	1	5			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356586	A	A	42356586	3	1	171	1	0	0	0	0	1	0	0	0	9028	1145	40	4	760	4	LRFN5	14	42356586	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	7958110	42356586	64992954	484	140264											
NID2	22795	broad.mit.edu	37	chr14	52509064	52509064	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcccattcactcggtgaggTgcccctaaaagacagcaaat	8	12	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52509064	A	A	52509064	2	1	171	1	0	0	0	0	0	0	0	1	10510	1683	59	5		5	NID2	14	52509064	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	10152478	52509064	54840476	485	140265											
PTGER2	5732	broad.mit.edu	37	chr14	52781374	52781374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgttctcggccggggtGctggggaacctcatagcact	14	11	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52781374	T	T	52781374	2	4	171	1	0	0	0	0	0	0	0	1	12849	1306	46	3		3	PTGER2	14	52781374	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	272310	52781374	54568166	486	140266											
DACT1	51339	broad.mit.edu	37	chr14	59112610	59112610	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagtggtcgaaagaatcAaaggccgaacaagccgaaag	12	8	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59112610	G	G	59112610	2	3	171	1	0	0	0	0	0	0	0	1	4255	117	5	5		5	DACT1	14	59112610	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	6331236	59112610	48236930	487	140267											
RTN1	6252	broad.mit.edu	37	chr14	60069844	60069844	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattggtcaatctgtgcctAcataaagaaaaaaaaaataa	5	5	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60069844	G	G	60069844	1	3	171	0	1	0	0	0	0	0	0	0	13836	406	14	5		5	RTN1	14	60069844	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	957234	60069844	47279696	488	140268											
DLST	1743	broad.mit.edu	37	chr14	75360125	75360125	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggtctgcgttcagaacatCgggtaagcctctgaggacca	12	10	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75360125	T	T	75360125	3	4	171	1	0	0	0	0	1	0	0	0	4609	875	31	4	704	4	DLST	14	75360125	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	15290281	75360125	31989415	489	140269											
ESRRB	2103	broad.mit.edu	37	chr14	76965259	76965259	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttccgcagagggcaggtaCgcaagggacaacagtatctt	12	11	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76965259	T	T	76965259	1	4	171	0	1	0	0	0	0	0	0	0	5303	551	19	4		4	ESRRB	14	76965259	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1605134	76965259	30384281	490	140270											
TTC8	123016	broad.mit.edu	37	chr14	89327606	89327606	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtgactgctttaaatcTtttcaaacaaggcttagata	6	8	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89327606	C	C	89327606	3	2	171	1	0	0	0	0	1	0	0	0	16840	1609	56	5	877	5	TTC8	14	89327606	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	12362347	89327606	18021934	491	140271											
CATSPERB	79820	broad.mit.edu	37	chr14	92058149	92058149	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacattatttctatgtctTagttttcatgtttaacctaa	4	6	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92058149	C	C	92058149	1	2	171	0	1	0	0	0	0	0	0	0	2717	1769	61	5		5	CATSPERB	14	92058149	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	2730543	92058149	15291391	492	140272											
CATSPERB	79820	broad.mit.edu	37	chr14	92074741	92074741	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatattagatggaggcctgTagtttatctgcaagtgatta	10	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92074741	C	C	92074741	3	2	171	1	0	0	0	0	1	0	0	0	2717	1638	57	5	768	5	CATSPERB	14	92074741	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	16592	92074741	15274799	493	140273											
RIN3	79890	broad.mit.edu	37	chr14	93118691	93118691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggagagcacggagcaaGgccaggacacagaggtgaaa	16	10	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93118691	T	T	93118691	3	4	171	1	0	0	0	0	1	0	0	0	13484	1000	35	2	1319	2	RIN3	14	93118691	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1043950	93118691	14230849	494	140274											
KIAA1409	57578	broad.mit.edu	37	chr14	94060029	94060029	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccttgattccctagcctGtggagggtcgtcaaatccga	10	12	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94060029	A	A	94060029	2	1	171	1	0	0	0	0	0	0	0	1	8300	1364	48	4		4	KIAA1409	14	94060029	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	941338	94060029	13289511	495	140275											
KIAA1409	57578	broad.mit.edu	37	chr14	94158119	94158119	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgctgcacatgtgctccCtcttccacgcgttcatcttt	7	16	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94158119	G	G	94158119	3	3	171	1	0	0	0	0	1	0	0	0	8300	681	24	4	7057	4	KIAA1409	14	94158119	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	98090	94158119	13191421	496	140276											
DICER1	23405	broad.mit.edu	37	chr14	95573988	95573988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaatcttctaatttaaaaaCaaagggtgtttcttttgtat	6	4	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95573988	A	A	95573988	3	1	171	1	0	0	0	0	1	0	0	0	4561	478	17	3	3051	3	DICER1	14	95573988	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1415869	95573988	11775552	497	140277											
ATG2B	55102	broad.mit.edu	37	chr14	96756049	96756049	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggtctactggctggtGggctaaccggtgatgaggaa	15	9	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96756049	C	C	96756049	3	2	171	1	0	0	0	0	1	0	0	0	1098	1348	47	4	294	4	ATG2B	14	96756049	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1182061	96756049	10593491	498	140278											
ATG2B	55102	broad.mit.edu	37	chr14	96791902	96791902	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtactatattgcagggcTgtcagatacttttgtgatgt	10	5	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96791902	A	A	96791902	1	1	171	0	1	0	0	0	0	0	0	0	1098	1595	55	5		5	ATG2B	14	96791902	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	35853	96791902	10557638	499	140279											
HHIPL1	84439	broad.mit.edu	37	chr14	100123176	100123176	+	Intron	DEL	G	-	-													gaaagaaagaaagaaagaaaGgaaggaaggaaggaaggaag							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100123176	-	-	100123176	6	5	171	0	1	1	0	1	0	0	0	0	7160	1015	35	0		0	HHIPL1	14	100123176	Intron	DEL	G	TCGA-50-6593-01A-11D-1753-08	3331274	100123176	7226364	500	140280											
DLK1	8788	broad.mit.edu	37	chr14	101198328	101198328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactggggcccgcatcacGctcgtgtatggagaggaagc	14	13	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101198328	T	T	101198328	1	4	171	0	1	0	0	0	0	0	0	0	4604	1102	38	3		3	DLK1	14	101198328	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1075152	101198328	6151212	501	140281											
TDRD9	122402	broad.mit.edu	37	chr14	104490907	104490907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaattcgtattatgtaggGtgaatgtggacttccagaag	11	4	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104490907	T	T	104490907	3	4	171	1	0	0	0	0	1	0	0	0	15858	1275	44	3	2706	3	TDRD9	14	104490907	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	3292579	104490907	2858633	502	140282											
AHNAK2	113146	broad.mit.edu	37	chr14	105418880	105418880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagcttggccttctgggCctggacatccacctccatgc	9	16	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105418880	A	A	105418880	3	1	171	1	0	0	0	0	1	0	0	0	415	739	26	3	14483	3	AHNAK2	14	105418880	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	927973	105418880	1930660	503	140283											
MKRN3	7681	broad.mit.edu	37	chr15	23811300	23811300	+	Frame_Shift_Del	DEL	G	-	-													ttcgcacgacctttctggtcGgaagatggccactgagggtg							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23811300	-	-	23811300	7	5	171	1	0	1	0	1	0	0	0	0	9701	1116	39	0	373	0	MKRN3	15	23811300	Frame_Shift_Del	DEL	G	TCGA-50-6593-01A-11D-1753-08		23811300	78720092	504	140284											
RYR3	6263	broad.mit.edu	37	chr15	33936678	33936678	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtggttcagcaagcgcctCccgacgtttgtcaacgtgcc	11	13	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33936678	T	T	33936678	2	4	171	1	0	0	0	0	0	0	0	1	13881	842	30	4		4	RYR3	15	33936678	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	10125378	33936678	68594714	505	140285											
MEIS2	4212	broad.mit.edu	37	chr15	37187407	37187407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacaaagctccccatgggCtgaccctctggactatatgc	8	14	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37187407	A	A	37187407	3	1	171	1	0	0	0	0	1	0	0	0	9561	796	28	3	412	3	MEIS2	15	37187407	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	3250729	37187407	65343985	506	140286											
UBR1	197131	broad.mit.edu	37	chr15	43367404	43367404	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaccttaattgagttcaaTgtaatattaactggatgtaa	6	6	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43367404	A	A	43367404	1	1	171	0	1	0	0	0	0	0	0	0	17027	1479	51	5		5	UBR1	15	43367404	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	6179997	43367404	59163988	507	140287											
UNC13C	440279	broad.mit.edu	37	chr15	54914534	54914534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttattttcaggtcgttcctCcaaagatgccgtgggtcaga	10	10	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54914534	A	A	54914534	3	1	171	1	0	0	0	0	1	0	0	0	17112	855	30	3	6230	3	UNC13C	15	54914534	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	11547130	54914534	47616858	508	140288											
NEDD4	4734	broad.mit.edu	37	chr15	56139269	56139269	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaaataaagaagtttaGgttgtttttattctggaaca	9	2	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56139269	T	T	56139269	1	4	171	0	1	0	0	0	0	0	0	0	10405	1015	35	2		2	NEDD4	15	56139269	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1224735	56139269	46392123	509	140289											
CSNK1G1	53944	broad.mit.edu	37	chr15	64592498	64592498	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgttagtagaagtcacTgacataaccaagtgcttacc	8	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64592498	C	C	64592498	1	2	171	0	1	0	0	0	0	0	0	0	3988	1595	55	5		5	CSNK1G1	15	64592498	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	8453229	64592498	37938894	510	140290											
CLPX	10845	broad.mit.edu	37	chr15	65472568	65472568	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaggaaatctacatcAaatatagacatgcctcaata	4	7	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65472568	C	C	65472568	1	2	171	0	1	0	0	0	0	0	0	0	3588	145	5	5		5	CLPX	15	65472568	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	880070	65472568	37058824	511	140291											
SMAD3	4088	broad.mit.edu	37	chr15	67473723	67473723	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgacccctccaattcggagcGcttctgcctagggctgctct	10	16	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67473723	A	A	67473723	3	1	171	1	0	0	0	0	1	0	0	0	14873	1087	38	4	903	4	SMAD3	15	67473723	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2001155	67473723	35057669	512	140292											
PTPN9	5780	broad.mit.edu	37	chr15	75816577	75816577	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgaattttccactgaggatCtcagaacgaagaggttcctc	10	9	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75816577	G	G	75816577	3	3	171	1	0	0	0	0	1	0	0	0	12902	912	32	4	1555	4	PTPN9	15	75816577	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	8342854	75816577	26714815	513	140293											
ADAMTS17	170691	broad.mit.edu	37	chr15	100739504	100739504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaaagaaaacaggacgaCacagagtctgatacttactt	8	8	1	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100739504	A	A	100739504	1	1	171	0	1	0	0	0	0	0	0	0	262	493	17	3		3	ADAMTS17	15	100739504	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	24922927	100739504	1791888	514	140294											
ADAMTS17	170691	broad.mit.edu	37	chr15	100801699	100801699	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttacctggtcacaaacacgGcagcatccaccaggggcggg	12	14	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100801699	C	C	100801699	3	2	171	1	0	0	0	0	1	0	0	0	262	1203	42	4	2339	4	ADAMTS17	15	100801699	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	62195	100801699	1729693	515	140295											
PARN	5073	broad.mit.edu	37	chr16	14711498	14711498	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcttgctagaaagtcaaTgctggagctctgaaacagag	12	8	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14711498	C	C	14711498	3	2	171	1	0	0	0	0	1	0	0	0	11547	1464	51	5	1658	5	PARN	16	14711498	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08		14711498	75643255	516	140296											
RRN3	54700	broad.mit.edu	37	chr16	15166736	15166736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcatggtctccgtccaccCcagtttttagggaaaatttt	7	11	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15166736	A	A	15166736	1	1	171	0	1	0	0	0	0	0	0	0	13795	638	22	2		2	RRN3	16	15166736	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	455238	15166736	75188017	517	140297											
KIAA0430	9665	broad.mit.edu	37	chr16	15694590	15694590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatactactggttaagcagCggaaaaggaggggacagaag	14	6	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15694590	A	A	15694590	1	1	171	0	1	0	0	0	0	0	0	0	8247	783	27	3		3	KIAA0430	16	15694590	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	527854	15694590	74660163	518	140298											
NDE1	54820	broad.mit.edu	37	chr16	15785148	15785148	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctcaccgaggacccagctCaagtttaaacacacctggga	9	13	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15785148	T	T	15785148	3	4	171	1	0	0	0	0	1	0	0	0	10338	838	29	4	689	4	NDE1	16	15785148	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	90558	15785148	74569605	519	140299											
GPR139	124274	broad.mit.edu	37	chr16	20043936	20043937	+	Nonsense_Mutation	DNP	GG	TT	TT													gccaagagatagttgtaggaGgacttctgtcttcttgccac							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	20043937	TT	TT	20043936	4	4	171	1	0	0	0	0	0	1	0	0	6713	987	35	2	882	2	GPR139	16	20043936	Nonsense_Mutation	DNP	GG	TCGA-50-6593-01A-11D-1753-08	4258788	20043936	70310817	520	140300											
GP2	2813	broad.mit.edu	37	chr16	20329664	20329664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagttcaactgcatcccCttcgtaaggattcgtgtagt	9	10	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20329664	A	A	20329664	3	1	171	1	0	0	0	0	1	0	0	0	6647	681	24	2	528	2	GP2	16	20329664	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	285728	20329664	70025089	521	140301											
ACSM5	54988	broad.mit.edu	37	chr16	20429494	20429494	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggcagccaatgtgctGgggggtgcatgcggcctgca	18	9	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20429494	C	C	20429494	2	2	171	1	0	0	0	0	0	0	0	1	187	1335	47	4		4	ACSM5	16	20429494	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	99830	20429494	69925259	522	140302											
ACSM2A	123876	broad.mit.edu	37	chr16	20482661	20482661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgaacattcatctcctGttgatacaggatgtgtggat	9	8	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20482661	T	T	20482661	1	4	171	0	1	0	0	0	0	0	0	0	183	1392	48	3		3	ACSM2A	16	20482661	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	53167	20482661	69872092	523	140303											
ACSM2A	123876	broad.mit.edu	37	chr16	20488798	20488798	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgggacactgaggagggagGaagttaggggaaacactgat	17	5	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20488798	T	T	20488798	1	4	171	0	1	0	0	0	0	0	0	0	183	1189	41	3		3	ACSM2A	16	20488798	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	6137	20488798	69865955	524	140304											
OTOA	146183	broad.mit.edu	37	chr16	21696548	21696548	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccaacaccccaaataCaggcagccgtggaaaaccac	6	17	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21696548	T	T	21696548	1	4	171	0	1	0	0	0	0	0	0	0	11396	493	17	4		4	OTOA	16	21696548	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1207750	21696548	68658205	525	140305											
ERN2	10595	broad.mit.edu	37	chr16	23713880	23713880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggcagaagatggagagcCatgagtgagggaggttcttc	16	5	1	5			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23713880	A	A	23713880	1	1	171	0	1	0	0	0	0	0	0	0	5280	609	21	2		2	ERN2	16	23713880	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2017332	23713880	66640873	526	140306											
KIAA0556	23247	broad.mit.edu	37	chr16	27689013	27689013	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtttttctcaaggtaccAtatttatctctcatctctct	3	10	5	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27689013	G	G	27689013	1	3	171	0	1	0	0	0	0	0	0	0	8253	232	8	5		5	KIAA0556	16	27689013	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	3975133	27689013	62665740	527	140307											
GSG1L	146395	broad.mit.edu	37	chr16	27802648	27802648	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgcagcaggggctggtGccagcgatggcctgaggtcc	17	11	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27802648	A	A	27802648	1	1	171	0	1	0	0	0	0	0	0	0	6887	1334	46	4		4	GSG1L	16	27802648	3'UTR	SNP	G	TCGA-50-6593-01A-11D-1753-08	113635	27802648	62552105	528	140308											
ZNF688	146542	broad.mit.edu	37	chr16	30583418	30583418	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgccttcaagaaagaTgtaagggcccgaagcttcac	9	11	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30583418	A	A	30583418	1	1	171	0	1	0	0	0	0	0	0	0	18220	1479	51	5		5	ZNF688	16	30583418	5'UTR	SNP	T	TCGA-50-6593-01A-11D-1753-08	2780770	30583418	59771335	529	140309											
ITGAX	3687	broad.mit.edu	37	chr16	31382401	31382401	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacccttctctcctctggCcagcggatcgcgggctccca	9	18	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31382401	T	T	31382401	1	4	171	0	1	0	0	0	0	0	0	0	7959	754	26	4		4	ITGAX	16	31382401	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	798983	31382401	58972352	530	140310											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53639303	53639303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaacgtgtgactcagcacCcttggagccagcaaaaagaa	10	10	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53639303	A	A	53639303	1	1	171	0	1	0	0	0	0	0	0	0	13661	638	22	2		2	RPGRIP1L	16	53639303	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	22256902	53639303	36715450	531	140311											
SLC6A2	6530	broad.mit.edu	37	chr16	55729298	55729298	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacacaaggtcaacattgaGgatgtggccacagaaggtgg	14	7	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55729298	A	A	55729298	2	1	171	1	0	0	0	0	0	0	0	1	14797	991	35	4		4	SLC6A2	16	55729298	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	2089995	55729298	34625455	532	140312											
SLC12A3	6559	broad.mit.edu	37	chr16	56913484	56913484	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtcaggcttcgcgcccCtgatcacggctggcatcttc	12	14	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56913484	T	T	56913484	2	4	171	1	0	0	0	0	0	0	0	1	14497	680	24	4		4	SLC12A3	16	56913484	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	1184186	56913484	33441269	533	140313											
TMCO7	79613	broad.mit.edu	37	chr16	68953169	68953169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatggagggaagggagaagCgaaataccagttgttttcct	14	5	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68953169	A	A	68953169	1	1	171	0	1	0	0	0	0	0	0	0	16124	783	27	3		3	TMCO7	16	68953169	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	12039685	68953169	21401584	534	140314											
MLKL	197259	broad.mit.edu	37	chr16	74712987	74712988	+	Intron	DNP	CC	AA	AA													acagtaccatgggtgcctgtCcacagttacacaggaaaaac					rs148805824	by1000genomes	TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	74712988	AA	AA	74712987	1	1	171	0	1	0	0	0	0	0	0	0	9712	870	30	3		3	MLKL	16	74712987	Intron	DNP	CC	TCGA-50-6593-01A-11D-1753-08	5759818	74712987	15641766	535	140315											
SDR42E1	93517	broad.mit.edu	37	chr16	82034527	82034527	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcactgttactgatccaaAtgcaaacgtcattctcccta	4	13	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82034527	C	C	82034527	1	2	171	0	1	0	0	0	0	0	0	0	14086	116	4	5		5	SDR42E1	16	82034527	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	7321540	82034527	8320226	536	140316											
GINS2	51659	broad.mit.edu	37	chr16	85712182	85712182	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtctcacaaagctgtcAgcagacactcggagtttggc	11	11	2	1	rs138755140		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85712182	G	G	85712182	2	3	171	1	0	0	0	0	0	0	0	1	6452	175	7	5		5	GINS2	16	85712182	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	3677655	85712182	4642571	537	140317											
ZC3H18	124245	broad.mit.edu	37	chr16	88690964	88690964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggatgtaggccagcgggGccccgtccaccagccctgcc	15	16	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88690964	T	T	88690964	1	4	171	0	1	0	0	0	0	0	0	0	17694	1218	42	3		3	ZC3H18	16	88690964	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2978782	88690964	1663789	538	140318											
OR1A2	26189	broad.mit.edu	37	chr17	3101096	3101096	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaagttcatctcctttgGgggatgcctaatgcagatgt	12	8	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3101096	A	A	3101096	3	1	171	1	0	0	0	0	1	0	0	0	11044	1232	43	4	286	4	OR1A2	17	3101096	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08		3101096	78094114	539	140319											
OR3A3	8392	broad.mit.edu	37	chr17	3324736	3324737	+	Missense_Mutation	DNP	CC	AA	AA													tttcatgactgtgatcaaccCcatgctgaacccacttatct							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	3324737	AA	AA	3324736	3	1	171	1	0	0	0	0	1	0	0	0	11133	623	22	2	877	2	OR3A3	17	3324736	Missense_Mutation	DNP	CC	TCGA-50-6593-01A-11D-1753-08	223640	3324736	77870474	540	140320											
RABEP1	9135	broad.mit.edu	37	chr17	5276845	5276845	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttttattcagatataattCacgtgccaattcaaccattt	4	8	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5276845	G	G	5276845	1	3	171	0	1	0	0	0	0	0	0	0	13069	841	29	4		4	RABEP1	17	5276845	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1952109	5276845	75918365	541	140321											
CLEC10A	10462	broad.mit.edu	37	chr17	6981959	6981959	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctggggcctgacctcctcaGagttaggacccaccagtgcg	13	14	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6981959	T	T	6981959	1	4	171	0	1	0	0	0	0	0	0	0	3527	957	33	3		3	CLEC10A	17	6981959	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1705114	6981959	74213251	542	140322											
SHBG	6462	broad.mit.edu	37	chr17	7534882	7534882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgatttctacatccccGtatcttatctctgtcacact	4	15	4	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7534882	T	T	7534882	1	4	171	0	1	0	0	0	0	0	0	0	14382	1160	40	3		3	SHBG	17	7534882	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	552923	7534882	73660328	543	140323											
TP53	7157	broad.mit.edu	37	chr17	7577609	7577609	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtacagtcagagccaacCtaggagataacacaggccca	11	11	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7577609	G	G	7577609	5	3	171	1	0	0	0	0	0	0	1	0	16505	695	24	4	618	4	TP53	17	7577609	Splice_Site	SNP	C	TCGA-50-6593-01A-11D-1753-08	42727	7577609	73617601	544	140324											
NTN1	9423	broad.mit.edu	37	chr17	9124456	9124456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccagcctaattagtttttGtctgtgctccccccccaccc	6	18	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9124456	T	T	9124456	1	4	171	0	1	0	0	0	0	0	0	0	10795	1392	48	3		3	NTN1	17	9124456	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1546847	9124456	72070754	545	140325											
MYH3	4621	broad.mit.edu	37	chr17	10555979	10555979	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacggagtcttgctttgtcgCccaggctggagtgcagtgat	15	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10555979	G	G	10555979	1	3	171	0	1	0	0	0	0	0	0	0	10130	754	26	4		4	MYH3	17	10555979	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1431523	10555979	70639231	546	140326											
LGALS9	3965	broad.mit.edu	37	chr17	25974363	25974363	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccccgttttgatgagaatGctgtggtccgcaacacccag	10	13	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25974363	T	T	25974363	3	4	171	1	0	0	0	0	1	0	0	0	8820	1319	46	3	864	3	LGALS9	17	25974363	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	15418384	25974363	55220847	547	140327											
NOS2	4843	broad.mit.edu	37	chr17	26114746	26114746	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttgacaaattcgatagctTgaggtagaagctcatctgga	12	6	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26114746	A	A	26114746	3	1	171	1	0	0	0	0	1	0	0	0	10638	1812	63	5	3128	5	NOS2	17	26114746	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	140383	26114746	55080464	548	140328											
SLC13A2	9058	broad.mit.edu	37	chr17	26818601	26818601	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgccacgctgactggcaccGcacccaacctggtgctgcaa	10	17	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26818601	A	A	26818601	3	1	171	1	0	0	0	0	1	0	0	0	14505	1087	38	4	886	4	SLC13A2	17	26818601	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	703855	26818601	54376609	549	140329											
TMIGD1	388364	broad.mit.edu	37	chr17	28656339	28656339	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtaaagctgattccGttgtcattttcactgatgga	10	8	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28656339	A	A	28656339	2	1	171	1	0	0	0	0	0	0	0	1	16353	1136	40	4		4	TMIGD1	17	28656339	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	1837738	28656339	52538871	550	140330											
NF1	4763	broad.mit.edu	37	chr17	29562721	29562721	+	Frame_Shift_Del	DEL	G	-	-													ttttctaaagaagtagaattGgcagactccatgcagactct							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29562721	-	-	29562721	7	5	171	1	0	1	0	1	0	0	0	0	10451	1339	47	0	3972	0	NF1	17	29562721	Frame_Shift_Del	DEL	G	TCGA-50-6593-01A-11D-1753-08	906382	29562721	51632489	551	140331											
NF1	4763	broad.mit.edu	37	chr17	29679430	29679430	+	Frame_Shift_Del	DEL	T	-	-													ggccaacactaagaagttgcTtggttagtttatctaaatta							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29679430	-	-	29679430	7	5	171	1	0	1	0	1	0	0	0	0	10451	1609	56	0	7876	0	NF1	17	29679430	Frame_Shift_Del	DEL	T	TCGA-50-6593-01A-11D-1753-08	116709	29679430	51515780	552	140332											
UNC45B	146862	broad.mit.edu	37	chr17	33510508	33510508	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggtgctgctctgcggGgaggatgatgataaggtgca	18	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33510508	T	T	33510508	2	4	171	1	0	0	0	0	0	0	0	1	17115	1219	43	2		2	UNC45B	17	33510508	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	3831078	33510508	47684702	553	140333											
MED1	5469	broad.mit.edu	37	chr17	37580133	37580133	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatataaaaatgaaaaaccCaaacaccttttttttttttg	3	6	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37580133	G	G	37580133	1	3	171	0	1	0	0	0	0	0	0	0	9518	609	21	4		4	MED1	17	37580133	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	4069625	37580133	43615077	554	140334											
KRT34	3885	broad.mit.edu	37	chr17	39537532	39537532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctctcatgtgttgtttgGgtagaattggcctgaatctt	10	9	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39537532	T	T	39537532	1	4	171	0	1	0	0	0	0	0	0	0	8542	1247	43	2		2	KRT34	17	39537532	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	1957399	39537532	41657678	555	140335											
KRT13	3860	broad.mit.edu	37	chr17	39658830	39658830	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actccgtctctgccaccgtgTtctccagccccgctttctgg	8	18	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39658830	A	A	39658830	3	1	171	1	0	0	0	0	1	0	0	0	8521	1725	60	5	348	5	KRT13	17	39658830	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	121298	39658830	41536380	556	140336											
KRT14	3861	broad.mit.edu	37	chr17	39739908	39739908	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcgctgttggtggccacCtcgcggttcagctcctctgt	12	14	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39739908	T	T	39739908	2	4	171	1	0	0	0	0	0	0	0	1	8522	680	24	4		4	KRT14	17	39739908	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	81078	39739908	41455302	557	140337											
KCNH4	23415	broad.mit.edu	37	chr17	40317401	40317401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggttcatgggactctcaGgctggggaggtctgctttgg	18	7	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40317401	T	T	40317401	1	4	171	0	1	0	0	0	0	0	0	0	8104	1015	35	2		2	KCNH4	17	40317401	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	577493	40317401	40877809	558	140338											
WNK4	65266	broad.mit.edu	37	chr17	40933017	40933017	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcgaggagcccaccgcctAgctccaaagaaccccccgag	10	19	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40933017	G	G	40933017	3	3	171	1	0	0	0	0	1	0	0	0	17507	420	15	5	303	5	WNK4	17	40933017	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	615616	40933017	40262193	559	140339											
G6PC	2538	broad.mit.edu	37	chr17	41056063	41056063	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagactggaccaggtaagCgtcccagcccctgcagacag	13	13	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41056063	T	T	41056063	1	4	171	0	1	0	0	0	0	0	0	0	6203	783	27	4		4	G6PC	17	41056063	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	123046	41056063	40139147	560	140340											
BRCA1	672	broad.mit.edu	37	chr17	41251814	41251814	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattcaatgtagacagacgtCttttgaggttgtatccgctg	10	7	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41251814	A	A	41251814	3	1	171	1	0	0	0	0	1	0	0	0	1507	912	32	3	5204	3	BRCA1	17	41251814	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	195751	41251814	39943396	561	140341											
MYL4	4635	broad.mit.edu	37	chr17	45300361	45300361	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgagccacatggtggctgAttttcacttttttcctagcc	9	11	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45300361	G	G	45300361	1	3	171	0	1	0	0	0	0	0	0	0	10143	348	12	5		5	MYL4	17	45300361	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	4048547	45300361	35894849	562	140342											
KIF2B	84643	broad.mit.edu	37	chr17	51901824	51901824	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattaacaagagtcttctagCcctcaaagaatgtattctgg	8	8	4	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901824	T	T	51901824	3	4	171	1	0	0	0	0	1	0	0	0	8368	739	26	4	1432	4	KIF2B	17	51901824	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	6601463	51901824	29293386	563	140343											
BZRAP1	9256	broad.mit.edu	37	chr17	56382393	56382393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtagggtagactgccctgCcaagctgggagcccagctcc	13	14	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56382393	A	A	56382393	1	1	171	0	1	0	0	0	0	0	0	0	1587	754	26	3		3	BZRAP1	17	56382393	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	4480569	56382393	24812817	564	140344											
ABCA9	10350	broad.mit.edu	37	chr17	67014530	67014530	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaagaacaacatttaacaGctgcatttcagccccatgtt	5	11	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67014530	A	A	67014530	1	1	171	0	1	0	0	0	0	0	0	0	39	986	34	4		4	ABCA9	17	67014530	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	10632137	67014530	14180680	565	140345											
ABCA10	10349	broad.mit.edu	37	chr17	67148714	67148714	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatctaaagagaaaatgtTatgttaggatgcaagaaacc	9	4	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67148714	G	G	67148714	1	3	171	0	1	0	0	0	0	0	0	0	29	1769	61	5		5	ABCA10	17	67148714	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	134184	67148714	14046496	566	140346											
UBE2O	63893	broad.mit.edu	37	chr17	74398656	74398656	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggctatccttcccaagccGatggctctctggtggtgaga	13	11	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74398656	A	A	74398656	1	1	171	0	1	0	0	0	0	0	0	0	16994	1073	37	4		4	UBE2O	17	74398656	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	7249942	74398656	6796554	567	140347											
TBC1D16	125058	broad.mit.edu	37	chr17	77987181	77987181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacctgggtggtgctcccCcagcccctgcagcccctccg	10	21	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77987181	A	A	77987181	3	1	171	1	0	0	0	0	1	0	0	0	15724	623	22	2	2181	2	TBC1D16	17	77987181	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	3588525	77987181	3208029	568	140348											
SLC26A11	284129	broad.mit.edu	37	chr17	78210991	78210991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtatctgctgggtgccaGggggtctgaggtcagttagg	18	6	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78210991	T	T	78210991	1	4	171	0	1	0	0	0	0	0	0	0	14630	1015	35	2		2	SLC26A11	17	78210991	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	223810	78210991	2984219	569	140349											
ANKRD30B	374860	broad.mit.edu	37	chr18	14852116	14852116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaccgatgtgaaacacaGtgtcaaatgaagaaagctga	11	6	1	5			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14852116	T	T	14852116	3	4	171	1	0	0	0	0	1	0	0	0	659	1020	36	3	3958	3	ANKRD30B	18	14852116	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08		14852116	63225132	570	140350											
ASXL3	80816	broad.mit.edu	37	chr18	31323961	31323961	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggagtgaagaacaggcCactgtatccatgggtaccac	12	11	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323961	T	T	31323961	2	4	171	1	0	0	0	0	0	0	0	1	1072	581	21	4		4	ASXL3	18	31323961	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	16471845	31323961	46753287	571	140351											
DTNA	1837	broad.mit.edu	37	chr18	32374320	32374320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctctctcttttttttttTactctcttttttcttacagt	1	9	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32374320	C	C	32374320	1	2	171	0	1	0	0	0	0	0	0	0	4828	1769	61	5		5	DTNA	18	32374320	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	1050359	32374320	45702928	572	140352											
FHOD3	80206	broad.mit.edu	37	chr18	34310681	34310681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtaacgccatcaatattGgtctgacggtgctgccccct	11	12	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34310681	T	T	34310681	3	4	171	1	0	0	0	0	1	0	0	0	5940	1348	47	2	3031	2	FHOD3	18	34310681	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1936361	34310681	43766567	573	140353											
FHOD3	80206	broad.mit.edu	37	chr18	34335226	34335226	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagcagaaacagaaacgGgccaaccacagagagagaaa	11	9	0	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34335226	T	T	34335226	2	4	171	1	0	0	0	0	0	0	0	1	5940	1219	43	2		2	FHOD3	18	34335226	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	24545	34335226	43742022	574	140354											
NARS	4677	broad.mit.edu	37	chr18	55276717	55276717	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttagttattcacattgaTttaaaaattctaccatatag	3	5	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55276717	C	C	55276717	1	2	171	0	1	0	0	0	0	0	0	0	10264	1508	52	5		5	NARS	18	55276717	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	20941491	55276717	22800531	575	140355											
LRRC8E	80131	broad.mit.edu	37	chr19	7965609	7965609	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctgggcgacaaccagctGagccagctctcgccccacgt	10	17	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7965609	A	A	7965609	2	1	171	1	0	0	0	0	0	0	0	1	9112	1277	45	4		4	LRRC8E	19	7965609	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08		7965609	51163374	576	140356											
MUC16	94025	broad.mit.edu	37	chr19	9048033	9048033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgtacagtaggggagaCagctaaagttggaatggctg	14	7	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9048033	A	A	9048033	3	1	171	1	0	0	0	0	1	0	0	0	10067	478	17	3	10245	3	MUC16	19	9048033	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1082424	9048033	50080950	577	140357											
MUC16	94025	broad.mit.edu	37	chr19	9087382	9087382	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcatgggtgaacttggaCttgaaatatcaaggtctgtt	10	6	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9087382	T	T	9087382	3	4	171	1	0	0	0	0	1	0	0	0	10067	565	20	4	39426	4	MUC16	19	9087382	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	39349	9087382	50041601	578	140358											
ZNF439	90594	broad.mit.edu	37	chr19	11978562	11978562	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggaaagcattccattgtctCagtttatatcttatccatga	7	8	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11978562	T	T	11978562	2	4	171	1	0	0	0	0	0	0	0	1	18038	813	29	4		4	ZNF439	19	11978562	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	2891180	11978562	47150421	579	140359											
CC2D1A	54862	broad.mit.edu	37	chr19	14029551	14029551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattggcctggacctctctGtccccagaccagctgccccc	8	19	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14029551	T	T	14029551	1	4	171	0	1	0	0	0	0	0	0	0	2752	1392	48	3		3	CC2D1A	19	14029551	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	2050989	14029551	45099432	580	140360											
NXNL1	115861	broad.mit.edu	37	chr19	17571338	17571338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctccaggaagccctcCctgcccctcctcacctcctc	4	25	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17571338	A	A	17571338	1	1	171	0	1	0	0	0	0	0	0	0	10883	638	22	2		2	NXNL1	19	17571338	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3541787	17571338	41557645	581	140361											
GLT25D1	79709	broad.mit.edu	37	chr19	17690182	17690182	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaggagaggcagggagatGcactggcttctctacgggtc	16	9	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17690182	A	A	17690182	1	1	171	0	1	0	0	0	0	0	0	0	6530	1334	46	4		4	GLT25D1	19	17690182	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	118844	17690182	41438801	582	140362											
SLC5A5	6528	broad.mit.edu	37	chr19	17988751	17988751	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggctatcccctaagcCtgaggctgcctcttccccca	8	18	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17988751	A	A	17988751	1	1	171	0	1	0	0	0	0	0	0	0	14782	696	24	2		2	SLC5A5	19	17988751	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	298569	17988751	41140232	583	140363											
SF4	57794	broad.mit.edu	37	chr19	19388526	19388526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcatggccatgccctccCacaaggccacactcacttgt	7	16	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19388526	A	A	19388526	1	1	171	0	1	0	0	0	0	0	0	0	14268	609	21	2		2	SF4	19	19388526	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	1399775	19388526	39740457	584	140364											
ZNF492	57615	broad.mit.edu	37	chr19	22847981	22847981	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattcatactggagagaaaCtctacaaacctgaaagttgt	8	7	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22847981	T	T	22847981	3	4	171	1	0	0	0	0	1	0	0	0	18070	565	20	4	1520	4	ZNF492	19	22847981	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	3459455	22847981	36281002	585	140365											
CCNE1	898	broad.mit.edu	37	chr19	30308274	30308274	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatggacgcattcttaccCctttgtgggcctcatttttg	9	11	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30308274	T	T	30308274	1	4	171	0	1	0	0	0	0	0	0	0	2950	638	22	4		4	CCNE1	19	30308274	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	7460293	30308274	28820709	586	140366											
NFKBID	84807	broad.mit.edu	37	chr19	36380905	36380905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcacgatggcctcctgggCcggcccagggggcagggcag	18	15	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36380905	A	A	36380905	3	1	171	1	0	0	0	0	1	0	0	0	10474	739	26	3	174	3	NFKBID	19	36380905	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	6072631	36380905	22748078	587	140367											
WDR62	284403	broad.mit.edu	37	chr19	36582094	36582094	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtgacatgtgggtccctttCctggcaggtccatgtggacc	13	11	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36582094	T	T	36582094	1	4	171	0	1	0	0	0	0	0	0	0	17440	870	30	4		4	WDR62	19	36582094	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	201189	36582094	22546889	588	140368											
GMFG	9535	broad.mit.edu	37	chr19	39825873	39825873	+	Intron	DEL	C	-	-													cccagtctcaccctgtacctCccagtcccaatcaccccagc							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39825873	-	-	39825873	6	5	171	0	1	1	0	1	0	0	0	0	6554	870	30	0		0	GMFG	19	39825873	Intron	DEL	C	TCGA-50-6593-01A-11D-1753-08	3243779	39825873	19303110	589	140369											
SUPT5H	6829	broad.mit.edu	37	chr19	39959770	39959770	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggaaaagtttgaggacCagccagagggcattgacctg	14	8	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39959770	T	T	39959770	4	4	171	1	0	0	0	0	0	1	0	0	15517	595	21	4	1249	4	SUPT5H	19	39959770	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	133897	39959770	19169213	590	140370											
PSG1	5669	broad.mit.edu	37	chr19	43348899	43348899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaccccctctatgttcaCtgagctgaagcctgaggtat	9	13	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43348899	A	A	43348899	1	1	171	0	1	0	0	0	0	0	0	0	12759	580	20	3		3	PSG1	19	43348899	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3389129	43348899	15780084	591	140371											
CEACAM19	56971	broad.mit.edu	37	chr19	45175887	45175887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctcaatcctggtcctctgGatgctccaaggctcccaggc	10	16	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45175887	T	T	45175887	3	4	171	1	0	0	0	0	1	0	0	0	3220	1183	41	3	81	3	CEACAM19	19	45175887	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	1826988	45175887	13953096	592	140372											
GPR77	27202	broad.mit.edu	37	chr19	47845055	47845055	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagccatgacctggtctcGgagatggaggtgtaggctgg	16	9	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47845055	T	T	47845055	2	4	171	1	0	0	0	0	0	0	0	1	6774	1103	39	1		1	GPR77	19	47845055	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	2669168	47845055	11283928	593	140373											
TSKS	60385	broad.mit.edu	37	chr19	50245161	50245161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaatcttcttgtgtagcCtctgacagctgggacaggca	11	11	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50245161	A	A	50245161	3	1	171	1	0	0	0	0	1	0	0	0	16751	681	24	2	312	2	TSKS	19	50245161	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2400106	50245161	8883822	594	140374											
SIGLEC6	946	broad.mit.edu	37	chr19	52033116	52033116	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgggggtggcgttcagggCggggaagccctggaaccagc	20	9	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52033116	T	T	52033116	3	4	171	1	0	0	0	0	1	0	0	0	14425	768	27	4	503	4	SIGLEC6	19	52033116	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	1787955	52033116	7095867	595	140375											
LILRA6	79168	broad.mit.edu	37	chr19	54745485	54745485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagggggtcactggggtGggaccacacccggggggtgt	19	11	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54745485	T	T	54745485	3	4	171	1	0	0	0	0	1	0	0	0	8861	1348	47	2	840	2	LILRA6	19	54745485	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2712369	54745485	4383498	596	140376											
LILRB1	10859	broad.mit.edu	37	chr19	55143393	55143393	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttctctcctaggagcctaCatcaaacccaccctctcagc	4	19	3	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55143393	G	G	55143393	4	3	171	1	0	0	0	0	0	1	0	0	8862	489	17	4	380	4	LILRB1	19	55143393	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	397908	55143393	3985590	597	140377											
NLRP8	126205	broad.mit.edu	37	chr19	56481879	56481879	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaccattttccccagaaccAtggctcagcatttgtatctg	7	12	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56481879	G	G	56481879	1	3	171	0	1	0	0	0	0	0	0	0	10578	232	8	5		5	NLRP8	19	56481879	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	1338486	56481879	2647104	598	140378											
PEG3	5178	broad.mit.edu	37	chr19	57327625	57327625	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgactcttctgagattcagTgaatggcccactatgaatga	9	8	3	5			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57327625	C	C	57327625	3	2	171	1	0	0	0	0	1	0	0	0	11814	1696	59	5	2585	5	PEG3	19	57327625	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	845746	57327625	1801358	599	140379											
ZNF304	57343	broad.mit.edu	37	chr19	57868358	57868358	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtgggaaagcctttagccGtaaagacacacttgttcagc	10	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57868358	C	C	57868358	3	2	171	1	0	0	0	0	1	0	0	0	17959	1145	40	4	1131	4	ZNF304	19	57868358	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	540733	57868358	1260625	600	140380											
SIRPB1	10326	broad.mit.edu	37	chr20	1551451	1551451	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgggaagtaaccgcacCatgggtgatatctgagccgt	12	8	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1551451	A	A	1551451	4	1	171	1	0	0	0	0	0	1	0	0	14446	608	21	2	120	2	SIRPB1	20	1551451	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08		1551451	61474069	601	140381											
TGM6	343641	broad.mit.edu	37	chr20	2384036	2384036	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcacccatcctctctctGtggcaggaatttccatgtct	7	14	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2384036	A	A	2384036	1	1	171	0	1	0	0	0	0	0	0	0	15957	1392	48	4		4	TGM6	20	2384036	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	832585	2384036	60641484	602	140382											
C20orf103	24141	broad.mit.edu	37	chr20	9496758	9496758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggatcgcgcatatgcaCtcaaaatgctctttgtaaag	11	8	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9496758	A	A	9496758	3	1	171	1	0	0	0	0	1	0	0	0	2097	565	20	3	359	3	C20orf103	20	9496758	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	7112722	9496758	53528762	603	140383											
KIAA1755	85449	broad.mit.edu	37	chr20	36869019	36869019	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggctcggttgggtttaggaGagtagagggaacacaggact	17	5	0	2	rs144867582		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36869019	T	T	36869019	3	4	171	1	0	0	0	0	1	0	0	0	8327	942	33	3	2136	3	KIAA1755	20	36869019	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	27372261	36869019	26156501	604	140384											
EYA2	2139	broad.mit.edu	37	chr20	45702913	45702913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcgcccctctccacgtcCacctacgtcctccaggaggc	7	21	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45702913	A	A	45702913	2	1	171	1	0	0	0	0	0	0	0	1	5372	581	21	2		2	EYA2	20	45702913	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	8833894	45702913	17322607	605	140385											
CTCFL	140690	broad.mit.edu	37	chr20	56099046	56099046	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtacttctcgctctcctcCgagggggccagcaccagctc	10	16	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56099046	G	G	56099046	2	3	171	1	0	0	0	0	0	0	0	1	4035	639	23	4		4	CTCFL	20	56099046	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	10396133	56099046	6926474	606	140386											
PHACTR3	116154	broad.mit.edu	37	chr20	58318045	58318045	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggacaaccatcctggggtCcaggctttggggggatcact	14	11	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58318045	A	A	58318045	1	1	171	0	1	0	0	0	0	0	0	0	11906	870	30	3		3	PHACTR3	20	58318045	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	2218999	58318045	4707475	607	140387											
ARFGAP1	55738	broad.mit.edu	37	chr20	61910347	61910347	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgtcctccctgtactcGgtgaggacttggccctgcag	12	14	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61910347	T	T	61910347	2	4	171	1	0	0	0	0	0	0	0	1	851	1130	39	1		1	ARFGAP1	20	61910347	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	3592302	61910347	1115173	608	140388											
BAGE2	85319	broad.mit.edu	37	chr21	11026837	11026837	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggaaatccagacccatgGccctatgtaacagattagga	9	10	0	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11026837	T	T	11026837	1	4	171	0	1	0	0	0	0	0	0	0	1297	1218	42	3		3	BAGE2	21	11026837	3'UTR	SNP	G	TCGA-50-6593-01A-11D-1753-08		11026837	37103058	609	140389											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253584	32253584	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggaaatacaggtagtttgtCgagagcaagtcacctggcaa	12	7	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32253584	G	G	32253584	3	3	171	1	0	0	0	0	1	0	0	0	8588	884	31	4	235	4	KRTAP11-1	21	32253584	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	21226747	32253584	15876311	610	140390											
TIAM1	7074	broad.mit.edu	37	chr21	32537365	32537365	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcagcactgctgccctgctCgctgcaaaggctgtgccctg	11	16	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32537365	A	A	32537365	4	1	171	1	0	0	0	0	0	1	0	0	16013	893	31	3	1922	3	TIAM1	21	32537365	Nonsense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	283781	32537365	15592530	611	140391											
COL6A1	1291	broad.mit.edu	37	chr21	47423462	47423462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacgacgtgcgggtggcGgtggtgcagtacagcggcac	18	12	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47423462	T	T	47423462	2	4	171	1	0	0	0	0	0	0	0	1	3731	1103	39	1		1	COL6A1	21	47423462	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	14886097	47423462	706433	612	140392											
C21orf56	84221	broad.mit.edu	37	chr21	47581632	47581632	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggtctgcgggcgcagCgcatggatgggggtgggggg	25	6	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47581632	G	G	47581632	1	3	171	0	1	0	0	0	0	0	0	0	2149	783	27	4		4	C21orf56	21	47581632	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	158170	47581632	548263	613	140393											
C22orf25	128989	broad.mit.edu	37	chr22	20030990	20030990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcttcctgcgtgctcagcGgtggctgcgccttgttgctt	13	12	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20030990	T	T	20030990	1	4	171	0	1	0	0	0	0	0	0	0	2161	1131	39	1		1	C22orf25	22	20030990	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08		20030990	31273576	614	140394											
C22orf43	51233	broad.mit.edu	37	chr22	23961586	23961586	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accggtaacagccacctgcgGagaaatggaaaagttaatct	10	9	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23961586	T	T	23961586	1	4	171	0	1	0	0	0	0	0	0	0	2172	1189	41	3		3	C22orf43	22	23961586	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3930596	23961586	27342980	615	140395											
SEZ6L	23544	broad.mit.edu	37	chr22	26747161	26747161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctgacctgctacagcCgtgaaacagggactcccatc	8	15	2	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26747161	A	A	26747161	3	1	171	1	0	0	0	0	1	0	0	0	14256	652	23	1	2597	1	SEZ6L	22	26747161	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2785575	26747161	24557405	616	140396											
TTLL8	164714	broad.mit.edu	37	chr22	50485615	50485615	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accttggtggtgaaggaggcTgtctttgcgtagtggttcag	16	6	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50485615	A	A	50485615	2	1	171	1	0	0	0	0	0	0	0	1	16859	1567	55	5		5	TTLL8	22	50485615	Silent	SNP	T	TCGA-50-6593-01A-11D-1753-08	23738454	50485615	818951	617	140397											
MOV10L1	54456	broad.mit.edu	37	chr22	50591726	50591726	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccttcctcccaggtgaggCtctgtcacctgcctgtggcg	12	15	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50591726	T	T	50591726	1	4	171	0	1	0	0	0	0	0	0	0	9813	812	28	4		4	MOV10L1	22	50591726	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	106111	50591726	712840	618	140398											
ZBED1	9189	broad.mit.edu	37	chrX	2406876	2406877	+	Missense_Mutation	DNP	CC	AA	AA													ccggttcctcttggcgctgaCcacgttggcggcggatccga							TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2406877	AA	AA	2406876	3	1	171	1	0	0	0	0	1	0	0	0	17644	507	18	3	203	3	ZBED1	23	2406876	Missense_Mutation	DNP	CC	TCGA-50-6593-01A-11D-1753-08		2406876	152863684	619	140399											
ZBED1	9189	broad.mit.edu	37	chrX	2407791	2407791	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacatggccacggcagactGctggaagtactccaccagtt	11	12	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2407791	A	A	2407791	4	1	171	1	0	0	0	0	0	1	0	0	17644	1328	46	4	1118	4	ZBED1	23	2407791	Nonsense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	915	2407791	152862769	620	140400											
CNKSR2	22866	broad.mit.edu	37	chrX	21579529	21579529	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagctaaaaatcagtgtaAgtttgagcagacatggggaa	11	4	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21579529	C	C	21579529	1	2	171	0	1	0	0	0	0	0	0	0	3639	87	3	5		5	CNKSR2	23	21579529	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	19171738	21579529	133691031	621	140401											
CNKSR2	22866	broad.mit.edu	37	chrX	21627175	21627175	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggcacagactaatcagggGctcctttctacagatgagtt	10	9	2	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21627175	C	C	21627175	1	2	171	0	1	0	0	0	0	0	0	0	3639	1218	42	4		4	CNKSR2	23	21627175	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	47646	21627175	133643385	622	140402											
SMS	6611	broad.mit.edu	37	chrX	22010739	22010739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgtcaatctgacagaaGcactgtcgctctatgaagaa	9	9	3	4			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22010739	T	T	22010739	3	4	171	1	0	0	0	0	1	0	0	0	14927	971	34	3	1008	3	SMS	23	22010739	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	383564	22010739	133259821	623	140403											
FAM47A	158724	broad.mit.edu	37	chrX	34149722	34149722	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccagtctcaggaggctccGggcggagactggacaccgga	15	13	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34149722	C	C	34149722	3	2	171	1	0	0	0	0	1	0	0	0	5620	1116	39	4	1705	4	FAM47A	23	34149722	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	12138983	34149722	121120838	624	140404											
FAM47C	442444	broad.mit.edu	37	chrX	37028384	37028384	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccatctccgcccagagcCtcccaagactcggatgtaca	8	17	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37028384	T	T	37028384	3	4	171	1	0	0	0	0	1	0	0	0	5622	681	24	4	1903	4	FAM47C	23	37028384	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	2878662	37028384	118242176	625	140405											
SYTL5	94122	broad.mit.edu	37	chrX	37984682	37984682	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatataaagaatgtttgccTagaacttactatctgggaca	9	6	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37984682	C	C	37984682	3	2	171	1	0	0	0	0	1	0	0	0	15605	1522	53	5	2101	5	SYTL5	23	37984682	Missense_Mutation	SNP	T	TCGA-50-6593-01A-11D-1753-08	956298	37984682	117285878	626	140406											
SRPX	8406	broad.mit.edu	37	chrX	38033568	38033568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccctgcagtacacatccCcatacttcaccttgatgggg	10	14	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38033568	A	A	38033568	3	1	171	1	0	0	0	0	1	0	0	0	15282	623	22	2	1232	2	SRPX	23	38033568	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	48886	38033568	117236992	627	140407											
RPGR	6103	broad.mit.edu	37	chrX	38178331	38178331	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgatttcctctattaacaGtgaagaaagttgaaagctat	8	6	1	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38178331	A	A	38178331	1	1	171	0	1	0	0	0	0	0	0	0	13659	1044	36	4		4	RPGR	23	38178331	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	144763	38178331	117092229	628	140408											
GSPT2	23708	broad.mit.edu	37	chrX	51486791	51486791	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtggacatggaatccccGgggtcggccccgagcgggga	18	12	0	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51486791	T	T	51486791	2	4	171	1	0	0	0	0	0	0	0	1	6893	1103	39	1		1	GSPT2	23	51486791	Silent	SNP	G	TCGA-50-6593-01A-11D-1753-08	13308460	51486791	103783769	629	140409											
TBX22	50945	broad.mit.edu	37	chrX	79286020	79286020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcagtggctcatctccaGtgacctctagtggaggggcc	14	11	3	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79286020	T	T	79286020	3	4	171	1	0	0	0	0	1	0	0	0	15780	1029	36	3	1003	3	TBX22	23	79286020	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	27799229	79286020	75984540	630	140410											
BRWD3	254065	broad.mit.edu	37	chrX	79951398	79951398	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagttattaaacaacaattcTatatttaccaatctgccagt	3	8	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79951398	C	C	79951398	1	2	171	0	1	0	0	0	0	0	0	0	1535	1537	53	5		5	BRWD3	23	79951398	Intron	SNP	T	TCGA-50-6593-01A-11D-1753-08	665378	79951398	75319162	631	140411											
PCDH11X	27328	broad.mit.edu	37	chrX	91238182	91238182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttagcatcttttttcccCcagtcttaggtaagaaggat	7	8	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91238182	A	A	91238182	1	1	171	0	1	0	0	0	0	0	0	0	11602	638	22	2		2	PCDH11X	23	91238182	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	11286784	91238182	64032378	632	140412											
PCDH11X	27328	broad.mit.edu	37	chrX	91714861	91714861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgggggcctggccgcgGggatggctgggggtctggca	23	10	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91714861	T	T	91714861	1	4	171	0	1	0	0	0	0	0	0	0	11602	1247	43	2		2	PCDH11X	23	91714861	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	476679	91714861	63555699	633	140413											
NXF5	55998	broad.mit.edu	37	chrX	101093983	101093983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctccagggctttcttcCtctccctccctcccctttgc	6	20	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101093983	A	A	101093983	1	1	171	0	1	0	0	0	0	0	0	0	10881	696	24	2		2	NXF5	23	101093983	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	9379122	101093983	54176577	634	140414											
COL4A5	1287	broad.mit.edu	37	chrX	107858176	107858177	+	Missense_Mutation	DNP	GG	TT	TT													atggacaacctggaccaatgGgacctcctgggctgccagga					rs104886182		TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107858177	TT	TT	107858176	3	4	171	1	0	0	0	0	1	0	0	0	3726	1233	43	2	2549	2	COL4A5	23	107858176	Missense_Mutation	DNP	GG	TCGA-50-6593-01A-11D-1753-08	6764193	107858176	47412384	635	140415											
LHFPL1	340596	broad.mit.edu	37	chrX	111903845	111903845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcactgccatctgcccagGccaccttacctaactgaaat	5	16	2	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111903845	T	T	111903845	1	4	171	0	1	0	0	0	0	0	0	0	8836	1218	42	3		3	LHFPL1	23	111903845	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	4045669	111903845	43366715	636	140416											
LRCH2	57631	broad.mit.edu	37	chrX	114357172	114357172	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgctcagtttgggctgtAaagtaagagggaaaaaatgt	12	5	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114357172	G	G	114357172	1	3	171	0	1	0	0	0	0	0	0	0	9020	377	13	5		5	LRCH2	23	114357172	Intron	SNP	A	TCGA-50-6593-01A-11D-1753-08	2453327	114357172	40913388	637	140417											
DOCK11	139818	broad.mit.edu	37	chrX	117758564	117758564	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactacttttggaaaatatAcagcgattagcaggtcgaga	11	6	0	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117758564	G	G	117758564	3	3	171	1	0	0	0	0	1	0	0	0	4726	381	14	5	3660	5	DOCK11	23	117758564	Missense_Mutation	SNP	A	TCGA-50-6593-01A-11D-1753-08	3401392	117758564	37511996	638	140418											
DOCK11	139818	broad.mit.edu	37	chrX	117814713	117814713	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtctttttcagcatacacGagtagcagctggccagctgg	12	10	2	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117814713	T	T	117814713	1	4	171	0	1	0	0	0	0	0	0	0	4726	1073	37	3		3	DOCK11	23	117814713	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	56149	117814713	37455847	639	140419											
ZDHHC9	51114	broad.mit.edu	37	chrX	128975781	128975781	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgaagaagagtgtacatgtCcccaggatgaggaaaagggt	15	6	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128975781	A	A	128975781	2	1	171	1	0	0	0	0	0	0	0	1	17748	842	30	3		3	ZDHHC9	23	128975781	Silent	SNP	C	TCGA-50-6593-01A-11D-1753-08	11161068	128975781	26294779	640	140420											
MST4	51765	broad.mit.edu	37	chrX	131206387	131206387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagaaagtacagaatgggGcagtatgtatatggagacaa	12	4	0	3			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131206387	T	T	131206387	3	4	171	1	0	0	0	0	1	0	0	0	9986	1203	42	3	1054	3	MST4	23	131206387	Missense_Mutation	SNP	G	TCGA-50-6593-01A-11D-1753-08	2230606	131206387	24064173	641	140421											
GPC3	2719	broad.mit.edu	37	chrX	132670042	132670042	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttcatggctggaggaggTatacaggataacaaaaaaaa	10	5	1	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132670042	G	G	132670042	1	3	171	0	1	0	0	0	0	0	0	0	6664	1653	57	5		5	GPC3	23	132670042	3'UTR	SNP	T	TCGA-50-6593-01A-11D-1753-08	1463655	132670042	22600518	642	140422											
ZIC3	7547	broad.mit.edu	37	chrX	136650988	136650988	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaccgccgggagctcagtCtcctgctgcttgcctctgag	12	14	3	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136650988	T	T	136650988	1	4	171	0	1	0	0	0	0	0	0	0	17806	928	32	4		4	ZIC3	23	136650988	Intron	SNP	C	TCGA-50-6593-01A-11D-1753-08	3980946	136650988	18619572	643	140423											
SPANXC	64663	broad.mit.edu	37	chrX	140358296	140358296	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttatcggccaccccaaGctggacctctcgctcattca	6	17	4	0			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140358296	T	T	140358296	1	4	171	0	1	0	0	0	0	0	0	0	15103	986	34	3		3	SPANXC	23	140358296	Intron	SNP	G	TCGA-50-6593-01A-11D-1753-08	3707308	140358296	14912264	644	140424											
MAGEC1	9947	broad.mit.edu	37	chrX	140995890	140995890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgagtccttgatagagagCgagcccttgttcacttatac	10	10	1	2			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995890	A	A	140995890	3	1	171	1	0	0	0	0	1	0	0	0	9272	767	27	3	2706	3	MAGEC1	23	140995890	Missense_Mutation	SNP	C	TCGA-50-6593-01A-11D-1753-08	637594	140995890	14274670	645	140425											
AFF2	2334	broad.mit.edu	37	chrX	148038041	148038041	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagctcactccatgcagcAcctgccaagccagaccacaa	6	18	1	1			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148038041	C	C	148038041	2	2	171	1	0	0	0	0	0	0	0	1	357	146	6	5		5	AFF2	23	148038041	Silent	SNP	A	TCGA-50-6593-01A-11D-1753-08	7042151	148038041	7232519	646	140426											
KIAA1751	85452	broad.mit.edu	37	chr1	1916778	1916778	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgggaaggactcgcacCgttctggggcctgcctgctg	15	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1916778	A	A	1916778	1	1	172	0	1	0	0	0	0	0	0	0	8326	667	23	1		1	KIAA1751	1	1916778	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08		1916778	247333843	1	140427											
CHD5	26038	broad.mit.edu	37	chr1	6214700	6214700	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagcgggactaggtgcCcacccaaccccagccttacc	8	19	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6214700	T	T	6214700	1	4	172	0	1	0	0	0	0	0	0	0	3359	638	22	4		4	CHD5	1	6214700	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4297922	6214700	243035921	2	140428											
NMNAT1	64802	broad.mit.edu	37	chr1	10041188	10041188	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaagtggactgaaacacaAgattctagtcaaaagaaatc	9	6	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10041188	G	G	10041188	2	3	172	1	0	0	0	0	0	0	0	1	10593	69	3	5		5	NMNAT1	1	10041188	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	3826488	10041188	239209433	3	140429											
PTCHD2	57540	broad.mit.edu	37	chr1	11583942	11583942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttccctctgcccatcgGgcccaggccaggatgtcctg	10	18	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11583942	T	T	11583942	1	4	172	0	1	0	0	0	0	0	0	0	12839	1247	43	2		2	PTCHD2	1	11583942	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1542754	11583942	237666679	4	140430											
VPS13D	55187	broad.mit.edu	37	chr1	12422933	12422933	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttgcttttgaaggatgaGagtgcctatttaatagcacg	11	5	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12422933	T	T	12422933	1	4	172	0	1	0	0	0	0	0	0	0	17319	957	33	3		3	VPS13D	1	12422933	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	838991	12422933	236827688	5	140431											
AADACL3	126767	broad.mit.edu	37	chr1	12786060	12786060	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaggtggtgcatagtgggGctagggaggaggtagaggtt	20	2	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12786060	T	T	12786060	1	4	172	0	1	0	0	0	0	0	0	0	12	1218	42	3		3	AADACL3	1	12786060	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	363127	12786060	236464561	6	140432											
PRAMEF1	65121	broad.mit.edu	37	chr1	12854358	12854358	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctaacgccgattaaataTctcagaaagtcattgaaaat	5	7	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12854358	A	A	12854358	4	1	172	1	0	0	0	0	0	1	0	0	12526	1442	50	5	588	5	PRAMEF1	1	12854358	Nonsense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	68298	12854358	236396263	7	140433											
CLCNKA	1187	broad.mit.edu	37	chr1	16356212	16356212	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaacctctgccctgggctCccccttcctgcagttctgga	8	17	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16356212	A	A	16356212	1	1	172	0	1	0	0	0	0	0	0	0	3500	870	30	3		3	CLCNKA	1	16356212	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3501854	16356212	232894409	8	140434											
NBPF1	55672	broad.mit.edu	37	chr1	16891109	16891109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtatggtcatcctatgGtacgttagtaaatgataagg	11	4	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16891109	T	T	16891109	1	4	172	0	1	0	0	0	0	0	0	0	10286	1276	44	3		3	NBPF1	1	16891109	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	534897	16891109	232359512	9	140435											
NBPF1	55672	broad.mit.edu	37	chr1	16894492	16894492	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgggacctgttgcctctTggtcctcctttttcacttga	8	13	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16894492	A	A	16894492	3	1	172	1	0	0	0	0	1	0	0	0	10286	1812	63	5	800	5	NBPF1	1	16894492	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	3383	16894492	232356129	10	140436											
IGSF21	84966	broad.mit.edu	37	chr1	18554341	18554341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgccctcatcagcccagCccctctgatctgctcgtgcc	7	21	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18554341	A	A	18554341	1	1	172	0	1	0	0	0	0	0	0	0	7669	754	26	3		3	IGSF21	1	18554341	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1659849	18554341	230696280	11	140437											
OTUD3	23252	broad.mit.edu	37	chr1	20234014	20234014	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccttctagcaggtggcaGcttgagtcccccgtgcttcc	10	16	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20234014	T	T	20234014	1	4	172	0	1	0	0	0	0	0	0	0	11407	986	34	3		3	OTUD3	1	20234014	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1679673	20234014	229016607	12	140438											
CAMK2N1	55450	broad.mit.edu	37	chr1	20810198	20810198	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcacgtcatcaatcctatCatcttcaataacaactgcaa	3	13	5	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20810198	T	T	20810198	3	4	172	1	0	0	0	0	1	0	0	0	2629	826	29	4	59	4	CAMK2N1	1	20810198	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	576184	20810198	228440423	13	140439											
EPHB2	2048	broad.mit.edu	37	chr1	23219270	23219270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaattgggaaccatagatGtttatccaatggccagacct	9	8	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23219270	T	T	23219270	1	4	172	0	1	0	0	0	0	0	0	0	5217	1392	48	3		3	EPHB2	1	23219270	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2409072	23219270	226031351	14	140440											
E2F2	1870	broad.mit.edu	37	chr1	23847583	23847583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggaacagagcagccccCcagtgtcagtctgtgggtga	14	11	3	2	rs137863297	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847583	A	A	23847583	1	1	172	0	1	0	0	0	0	0	0	0	4907	638	22	2		2	E2F2	1	23847583	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	628313	23847583	225403038	15	140441											
MYOM3	127294	broad.mit.edu	37	chr1	24383961	24383961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgaagacgccgtagcggcCgctgtcttcactgttgacct	12	13	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24383961	A	A	24383961	3	1	172	1	0	0	0	0	1	0	0	0	10187	652	23	1	110	1	MYOM3	1	24383961	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	536378	24383961	224866660	16	140442											
EXTL1	2134	broad.mit.edu	37	chr1	26356998	26356998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccaggagatgtcccctgCacgggtcctcgccctgcgtc	11	18	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26356998	A	A	26356998	3	1	172	1	0	0	0	0	1	0	0	0	5368	710	25	3	1027	3	EXTL1	1	26356998	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1973037	26356998	222893623	17	140443											
SYTL1	84958	broad.mit.edu	37	chr1	27679943	27679943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatggggccctggccaacCgccagctggggggcacacgc	15	16	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27679943	A	A	27679943	3	1	172	1	0	0	0	0	1	0	0	0	15601	652	23	1	1527	1	SYTL1	1	27679943	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1322945	27679943	221570678	18	140444											
C1orf38	9473	broad.mit.edu	37	chr1	28208975	28208975	+	Frame_Shift_Del	DEL	C	-	-													ctggaggtgctggggcctggCcaggcccatggggcccaggg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28208975	-	-	28208975	7	5	172	1	0	1	0	1	0	0	0	0	2061	726	26	0	1154	0	C1orf38	1	28208975	Frame_Shift_Del	DEL	C	TCGA-50-6594-01A-11D-1753-08	529032	28208975	221041646	19	140445											
SNRNP40	9410	broad.mit.edu	37	chr1	31769581	31769581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaactctgggcccttacgCttctgctgttctatcatggc	10	13	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31769581	A	A	31769581	3	1	172	1	0	0	0	0	1	0	0	0	14970	796	28	3	1095	3	SNRNP40	1	31769581	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3560606	31769581	217481040	20	140446											
BAI2	576	broad.mit.edu	37	chr1	32193111	32193111	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgttctcggggcttgggGggcagcgagcccagtgtcat	17	11	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32193111	T	T	32193111	2	4	172	1	0	0	0	0	0	0	0	1	1304	1219	43	2		2	BAI2	1	32193111	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	423530	32193111	217057510	21	140447											
TMCO2	127391	broad.mit.edu	37	chr1	40717240	40717240	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgccagagtcccttgtccAcatcagggtttacttccccc	7	16	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40717240	G	G	40717240	3	3	172	1	0	0	0	0	1	0	0	0	16119	159	6	5	529	5	TMCO2	1	40717240	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	8524129	40717240	208533381	22	140448											
CTPS	1503	broad.mit.edu	37	chr1	41473264	41473264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggctctgcgtgcccaGgacgcgtgtcttagggtgat	14	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41473264	T	T	41473264	1	4	172	0	1	0	0	0	0	0	0	0	4056	1015	35	2		2	CTPS	1	41473264	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	756024	41473264	207777357	23	140449											
FOXJ3	22887	broad.mit.edu	37	chr1	42776663	42776663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgtaatatgaggtgacCagtctaacttttaaaatgtt	7	5	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42776663	A	A	42776663	1	1	172	0	1	0	0	0	0	0	0	0	6073	609	21	2		2	FOXJ3	1	42776663	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1303399	42776663	206473958	24	140450											
TIE1	7075	broad.mit.edu	37	chr1	43772926	43772926	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgcccccctggcttcactGgcacccgctgtgaacagggt	11	15	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43772926	A	A	43772926	3	1	172	1	0	0	0	0	1	0	0	0	16016	1348	47	4	772	4	TIE1	1	43772926	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	996263	43772926	205477695	25	140451											
KIF2C	11004	broad.mit.edu	37	chr1	45227636	45227636	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgaatatactttaaacAccctgagatatgcagacagg	8	9	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45227636	T	T	45227636	3	4	172	1	0	0	0	0	1	0	0	0	8369	159	6	5	1798	5	KIF2C	1	45227636	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1454710	45227636	204022985	26	140452											
EIF2B3	8891	broad.mit.edu	37	chr1	45446642	45446642	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctgacaaatcatggggatCaaatctcctaaaagttttat	7	8	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45446642	T	T	45446642	1	4	172	0	1	0	0	0	0	0	0	0	5042	841	29	4		4	EIF2B3	1	45446642	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	219006	45446642	203803979	27	140453											
MUTYH	4595	broad.mit.edu	37	chr1	45798700	45798700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggaagccttctctacaCccaccccaaagtagaggctc	8	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45798700	A	A	45798700	1	1	172	0	1	0	0	0	0	0	0	0	10087	522	18	3		3	MUTYH	1	45798700	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	352058	45798700	203451921	28	140454											
AGBL4	84871	broad.mit.edu	37	chr1	50311714	50311714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttcagtcagcttgctcCcctcattcagcatcagagga	8	14	5	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50311714	A	A	50311714	1	1	172	0	1	0	0	0	0	0	0	0	377	638	22	2		2	AGBL4	1	50311714	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4513014	50311714	198938907	29	140455											
KTI12	112970	broad.mit.edu	37	chr1	52499255	52499255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacggaggctcgcagagctCcacgcaatgccttctcacgg	11	16	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52499255	A	A	52499255	3	1	172	1	0	0	0	0	1	0	0	0	8656	855	30	3	889	3	KTI12	1	52499255	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2187541	52499255	196751366	30	140456											
C1orf175	374977	broad.mit.edu	37	chr1	55158164	55158164	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttatgagaccacgtttctgGaggaccagggtggctgggag	16	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55158164	T	T	55158164	4	4	172	1	0	0	0	0	0	1	0	0	2036	1175	41	3	2833	3	C1orf175	1	55158164	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2658909	55158164	194092457	31	140457											
C1orf168	199920	broad.mit.edu	37	chr1	57252888	57252888	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcttccacagtcactgcaaGagaaagaggcggaatgaaaa	10	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57252888	T	T	57252888	1	4	172	0	1	0	0	0	0	0	0	0	2032	957	33	3		3	C1orf168	1	57252888	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2094724	57252888	191997733	32	140458											
RPE65	6121	broad.mit.edu	37	chr1	68895518	68895518	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaatctccacttcagcccGggcaacttcacttaagtcct	6	14	3	0	rs121917745		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68895518	T	T	68895518	2	4	172	1	0	0	0	0	0	0	0	1	13656	1115	39	1		1	RPE65	1	68895518	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	11642630	68895518	180355103	33	140459											
RPE65	6121	broad.mit.edu	37	chr1	68904918	68904918	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatccatgtagttggctcCccaaagactccatgaagaaa	7	11	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68904918	A	A	68904918	4	1	172	1	0	0	0	0	0	1	0	0	13656	632	22	2	815	2	RPE65	1	68904918	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	9400	68904918	180345703	34	140460											
LRRIQ3	127255	broad.mit.edu	37	chr1	74507409	74507409	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaaaaaactctttcatactCcgctccaatcgtatgtcttt	4	12	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74507409	A	A	74507409	2	1	172	1	0	0	0	0	0	0	0	1	9117	842	30	3		3	LRRIQ3	1	74507409	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	5602491	74507409	174743212	35	140461											
FPGT	8790	broad.mit.edu	37	chr1	74671565	74671565	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttttgagtaacattccagaGataggtattttttgtaggct	9	4	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74671565	T	T	74671565	1	4	172	0	1	0	0	0	0	0	0	0	6097	957	33	3		3	FPGT	1	74671565	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	164156	74671565	174579056	36	140462											
SLC44A5	204962	broad.mit.edu	37	chr1	75805205	75805205	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaaacagtacctccccCatcccccaaagctttctgtg	6	16	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75805205	G	G	75805205	1	3	172	0	1	0	0	0	0	0	0	0	14753	609	21	4		4	SLC44A5	1	75805205	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1133640	75805205	173445416	37	140463											
ELTD1	64123	broad.mit.edu	37	chr1	79403823	79403823	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggtgtccttggctgagaTagtgttgttcttgtaaccta	12	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79403823	C	C	79403823	3	2	172	1	0	0	0	0	1	0	0	0	5126	1406	49	5	1578	5	ELTD1	1	79403823	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	3598618	79403823	169846798	38	140464											
LPHN2	23266	broad.mit.edu	37	chr1	81968033	81968033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagaatggtggtttggcCtggagtgatgatgcagatgg	17	4	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81968033	A	A	81968033	1	1	172	0	1	0	0	0	0	0	0	0	9003	696	24	2		2	LPHN2	1	81968033	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2564210	81968033	167282588	39	140465											
SSX2IP	117178	broad.mit.edu	37	chr1	85115658	85115658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaataaaatgggcatgcCggaaaaaagtgttaagatat	9	5	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85115658	A	A	85115658	1	1	172	0	1	0	0	0	0	0	0	0	15322	667	23	1		1	SSX2IP	1	85115658	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3147625	85115658	164134963	40	140466											
COL24A1	255631	broad.mit.edu	37	chr1	86488261	86488261	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttctcctagctctcctgctGtgccttgttcaccctggaaa	8	14	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86488261	C	C	86488261	3	2	172	1	0	0	0	0	1	0	0	0	3715	1377	48	4	3158	4	COL24A1	1	86488261	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1372603	86488261	162762360	41	140467											
CLCA4	22802	broad.mit.edu	37	chr1	87031533	87031533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatcaagaagctccaagcCtacaaaacataaagtgcaat	5	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87031533	A	A	87031533	3	1	172	1	0	0	0	0	1	0	0	0	3490	680	24	2	806	2	CLCA4	1	87031533	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	543272	87031533	162219088	42	140468											
CLCA4	22802	broad.mit.edu	37	chr1	87045876	87045876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactttgtttatccctcaaGcaaatcctgatgacattgat	5	9	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87045876	T	T	87045876	3	4	172	1	0	0	0	0	1	0	0	0	3490	971	34	3	2662	3	CLCA4	1	87045876	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	14343	87045876	162204745	43	140469											
GBP5	115362	broad.mit.edu	37	chr1	89732129	89732129	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgcacaaattcaggctcTagctcatcatcaggcagtgt	9	10	5	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89732129	C	C	89732129	2	2	172	1	0	0	0	0	0	0	0	1	6339	1509	53	5		5	GBP5	1	89732129	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	2686253	89732129	159518492	44	140470											
COL11A1	1301	broad.mit.edu	37	chr1	103387028	103387028	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctgctataaaataacaatAcctatataacttcaaaataa	1	7	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103387028	T	T	103387028	1	4	172	0	1	0	0	0	0	0	0	0	3699	406	14	5		5	COL11A1	1	103387028	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	13654899	103387028	145863593	45	140471											
C1orf59	113802	broad.mit.edu	37	chr1	109191532	109191532	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggctcactcttaagctttCcacttgttgggacacctcat	8	12	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109191532	A	A	109191532	4	1	172	1	0	0	0	0	0	1	0	0	2073	864	30	3	347	3	C1orf59	1	109191532	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	5804504	109191532	140059089	46	140472											
KIAA1324	57535	broad.mit.edu	37	chr1	109715046	109715046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggagggctggtgcaatGtggggaaaggtatccatttc	15	7	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109715046	A	A	109715046	1	1	172	0	1	0	0	0	0	0	0	0	8293	1392	48	4		4	KIAA1324	1	109715046	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	523514	109715046	139535575	47	140473											
OVGP1	5016	broad.mit.edu	37	chr1	111966126	111966126	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctagatatataaaagtagAatcatttctggattctggcg	9	6	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111966126	T	T	111966126	1	4	172	0	1	0	0	0	0	0	0	0	11419	261	9	5		5	OVGP1	1	111966126	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2251080	111966126	137284495	48	140474											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	112958687	112958687	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattaaggcatttgatactAtaattgctcttatctctcac	4	8	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112958687	G	G	112958687	1	3	172	0	1	0	0	0	0	0	0	0	4080	464	16	5		5	CTTNBP2NL	1	112958687	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	992561	112958687	136291934	49	140475											
SYT6	148281	broad.mit.edu	37	chr1	114640403	114640403	+	Frame_Shift_Del	DEL	C	-	-													tgccagtgtgcgatgggcttCcgggggtatgccagcatctc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114640403	-	-	114640403	7	5	172	1	0	1	0	1	0	0	0	0	15597	842	30	0	79	0	SYT6	1	114640403	Frame_Shift_Del	DEL	C	TCGA-50-6594-01A-11D-1753-08	1681716	114640403	134610218	50	140476											
AMPD1	270	broad.mit.edu	37	chr1	115238066	115238066	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctccaaacactttgtacaCctacctgggagtttgaacag	7	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115238066	G	G	115238066	1	3	172	0	1	0	0	0	0	0	0	0	585	522	18	4		4	AMPD1	1	115238066	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	597663	115238066	134012555	51	140477											
ATP1A1	476	broad.mit.edu	37	chr1	116941357	116941357	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtgtccaagcaagctgctGacatgattcttctggatgac	10	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116941357	C	C	116941357	3	2	172	1	0	0	0	0	1	0	0	0	1132	1290	45	4	2317	4	ATP1A1	1	116941357	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1703291	116941357	132309264	52	140478											
WDR3	10885	broad.mit.edu	37	chr1	118484427	118484427	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccaaaaaggaaattcagAagaaaatggataagaagatg	9	3	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118484427	G	G	118484427	3	3	172	1	0	0	0	0	1	0	0	0	17412	247	9	5	976	5	WDR3	1	118484427	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1543070	118484427	130766194	53	140479											
SPAG17	200162	broad.mit.edu	37	chr1	118555088	118555088	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatacgaagatggcaccatCaaagtcctagttatttattt	7	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118555088	G	G	118555088	1	3	172	0	1	0	0	0	0	0	0	0	15095	841	29	4		4	SPAG17	1	118555088	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	70661	118555088	130695533	54	140480											
HSD3B1	3283	broad.mit.edu	37	chr1	120056732	120056732	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatctatggggaaggaagcCgattcctttctgctagtata	10	7	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120056732	A	A	120056732	2	1	172	1	0	0	0	0	0	0	0	1	7457	644	23	1		1	HSD3B1	1	120056732	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	1501644	120056732	129193889	55	140481											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874542	144874543	+	Intron	DNP	CC	AA	AA													agcagagcaaagatcctgatCcactggtgcctgtgcatggc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	144874543	AA	AA	144874542	1	1	172	0	1	0	0	0	0	0	0	0	11737	870	30	3		3	PDE4DIP	1	144874542	Intron	DNP	CC	TCGA-50-6594-01A-11D-1753-08	24817810	144874542	104376079	56	140482											
PDE4DIP	9659	broad.mit.edu	37	chr1	144886093	144886093	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttccctgggaagaatgtcCtacctgatgtgggacactga	11	11	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144886093	T	T	144886093	1	4	172	0	1	0	0	0	0	0	0	0	11737	696	24	4		4	PDE4DIP	1	144886093	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	11551	144886093	104364528	57	140483											
NBPF10	100132406	broad.mit.edu	37	chr1	145440162	145440162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatcctagtgcttatggCagttaaaacaggaactgggt	10	6	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145440162	A	A	145440162	1	1	172	0	1	0	0	0	0	0	0	0	10287	725	25	3		3	NBPF10	1	145440162	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	554069	145440162	103810459	58	140484											
MTMR11	10903	broad.mit.edu	37	chr1	149906027	149906027	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtcctagctttagaggatCaaggaactaagggaagattg	12	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149906027	G	G	149906027	1	3	172	0	1	0	0	0	0	0	0	0	10034	841	29	4		4	MTMR11	1	149906027	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4465865	149906027	99344594	59	140485											
TARS2	80222	broad.mit.edu	37	chr1	150463952	150463952	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcgacccttccggaggctaGaggcttcacgggatcagctt	12	13	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150463952	A	A	150463952	3	1	172	1	0	0	0	0	1	0	0	0	15679	943	33	4	613	4	TARS2	1	150463952	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	557925	150463952	98786669	60	140486											
SEMA6C	10500	broad.mit.edu	37	chr1	151109355	151109355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggtctgggtggtgaagaCcccaaagagagcagagcggc	16	8	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151109355	A	A	151109355	3	1	172	1	0	0	0	0	1	0	0	0	14154	507	18	3	1976	3	SEMA6C	1	151109355	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	645403	151109355	98141266	61	140487											
SEMA6C	10500	broad.mit.edu	37	chr1	151112131	151112131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccttgttgggcaccagccCctccccttcttcttcggctt	7	18	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151112131	A	A	151112131	3	1	172	1	0	0	0	0	1	0	0	0	14154	623	22	2	2672	2	SEMA6C	1	151112131	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2776	151112131	98138490	62	140488											
FLG	2312	broad.mit.edu	37	chr1	152287711	152287711	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctattttaagagaaatagttCacaaagagctcaaaataacc	5	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152287711	A	A	152287711	1	1	172	0	1	0	0	0	0	0	0	0	5979	841	29	3		3	FLG	1	152287711	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1175580	152287711	96962910	63	140489											
LOR	4014	broad.mit.edu	37	chr1	153233506	153233506	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggtggcggtggcggCggcagcggcggtggtggctg	26	9	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153233506	A	A	153233506	2	1	172	1	0	0	0	0	0	0	0	1	8984	755	27	3		3	LOR	1	153233506	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	945795	153233506	96017115	64	140490											
HAX1	10456	broad.mit.edu	37	chr1	154247798	154247798	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgaatgccctgaaacagggAtctgtgtaaagaaactgctg	11	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154247798	T	T	154247798	1	4	172	0	1	0	0	0	0	0	0	0	7041	348	12	5		5	HAX1	1	154247798	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1014292	154247798	95002823	65	140491											
PBXIP1	57326	broad.mit.edu	37	chr1	154920450	154920450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacaagacaggctcctccCtactcaccagtctcagactc	6	17	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154920450	A	A	154920450	1	1	172	0	1	0	0	0	0	0	0	0	11590	696	24	2		2	PBXIP1	1	154920450	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	672652	154920450	94330171	66	140492											
THBS3	7059	broad.mit.edu	37	chr1	155167905	155167905	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacgacggtctgataggcCcgaaaatccgtaagcgttac	12	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155167905	A	A	155167905	2	1	172	1	0	0	0	0	0	0	0	1	15978	610	22	2		2	THBS3	1	155167905	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	247455	155167905	94082716	67	140493											
ASH1L	55870	broad.mit.edu	37	chr1	155449759	155449759	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttctcttggtaattttttTatctggttccatctcaaggt	7	7	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155449759	A	A	155449759	4	1	172	1	0	0	0	0	0	1	0	0	1045	1763	61	5	6096	5	ASH1L	1	155449759	Nonsense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	281854	155449759	93800862	68	140494											
BCAN	63827	broad.mit.edu	37	chr1	156622711	156622711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccaaggctcaactgccCtctctatcctactccttttc	4	18	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156622711	A	A	156622711	1	1	172	0	1	0	0	0	0	0	0	0	1350	681	24	2		2	BCAN	1	156622711	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1172952	156622711	92627910	69	140495											
PRCC	5546	broad.mit.edu	37	chr1	156770211	156770211	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacacctggtcagagaacAagctcagccgccgtcagacc	10	14	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156770211	T	T	156770211	4	4	172	1	0	0	0	0	0	1	0	0	12553	131	5	5	1461	5	PRCC	1	156770211	Nonsense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	147500	156770211	92480410	70	140496											
OR10K1	391109	broad.mit.edu	37	chr1	158435355	158435355	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatagaagtgctctccatgGagcaagtcaataagactgtg	10	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158435355	T	T	158435355	4	4	172	1	0	0	0	0	0	1	0	0	11007	1175	41	3	6	3	OR10K1	1	158435355	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1665144	158435355	90815266	71	140497											
OR10R2	343406	broad.mit.edu	37	chr1	158450300	158450300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcttctggcttgtaccaaCacagatgttaacgaatttgt	7	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158450300	A	A	158450300	3	1	172	1	0	0	0	0	1	0	0	0	11011	477	17	3	635	3	OR10R2	1	158450300	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	14945	158450300	90800321	72	140498											
SPTA1	6708	broad.mit.edu	37	chr1	158627111	158627111	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggattcctgtcaactctgaGggagtctcagcagatgaagg	14	8	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158627111	T	T	158627111	1	4	172	0	1	0	0	0	0	0	0	0	15234	1015	35	2		2	SPTA1	1	158627111	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	176811	158627111	90623510	73	140499											
OR6N2	81442	broad.mit.edu	37	chr1	158747401	158747401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaacacaaattcagccaGgcttgaatggttgtattgat	10	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158747401	T	T	158747401	3	4	172	1	0	0	0	0	1	0	0	0	11301	991	35	2	931	2	OR6N2	1	158747401	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	120290	158747401	90503220	74	140500											
CADM3	57863	broad.mit.edu	37	chr1	159166865	159166865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatggtaagccctcctcaGttctcttcctccagaatctc	5	14	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159166865	T	T	159166865	1	4	172	0	1	0	0	0	0	0	0	0	2594	1044	36	3		3	CADM3	1	159166865	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	419464	159166865	90083756	75	140501											
COPA	1314	broad.mit.edu	37	chr1	160275343	160275343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacataaagcatccagtttgCggttacagatcacaatggct	8	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160275343	A	A	160275343	3	1	172	1	0	0	0	0	1	0	0	0	3759	768	27	3	2195	3	COPA	1	160275343	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1108478	160275343	88975278	76	140502											
LY9	4063	broad.mit.edu	37	chr1	160765944	160765944	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaagctgtggtaagtgcatCctccttcagtctcagttctg	11	10	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160765944	A	A	160765944	1	1	172	0	1	0	0	0	0	0	0	0	9189	870	30	3		3	LY9	1	160765944	5'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	490601	160765944	88484677	77	140503											
F11R	50848	broad.mit.edu	37	chr1	160970372	160970372	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgcagcagagcctgctAtgagaagtaactaactccag	10	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160970372	T	T	160970372	1	4	172	0	1	0	0	0	0	0	0	0	5381	464	16	5		5	F11R	1	160970372	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	204428	160970372	88280249	78	140504											
FCER1G	2207	broad.mit.edu	37	chr1	161188514	161188514	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcagatggtgtttacacgGtaagtgtgcctacctccccc	9	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161188514	A	A	161188514	5	1	172	1	0	0	0	0	0	0	1	0	5832	1275	44	4	213	4	FCER1G	1	161188514	Splice_Site	SNP	G	TCGA-50-6594-01A-11D-1753-08	218142	161188514	88062107	79	140505											
FCGR2A	2212	broad.mit.edu	37	chr1	161479723	161479723	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcacattcttccagaatGgaaaatcccagaaattctcc	6	11	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161479723	A	A	161479723	3	1	172	1	0	0	0	0	1	0	0	0	5838	1349	47	4	492	4	FCGR2A	1	161479723	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	291209	161479723	87770898	80	140506											
FCRLA	84824	broad.mit.edu	37	chr1	161682007	161682007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctagagatcagagtgcaGggtgagttcgcatcagagtg	15	7	2	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161682007	T	T	161682007	3	4	172	1	0	0	0	0	1	0	0	0	5857	1014	35	2	870	2	FCRLA	1	161682007	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	202284	161682007	87568614	81	140507											
LRRC52	440699	broad.mit.edu	37	chr1	165532688	165532688	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgatcccctttggccttagGacgctgggagtcacgctgtt	12	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165532688	A	A	165532688	1	1	172	0	1	0	0	0	0	0	0	0	9097	1189	41	4		4	LRRC52	1	165532688	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3850681	165532688	83717933	82	140508											
FAM78B	149297	broad.mit.edu	37	chr1	166039616	166039616	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatccggggctgctcctgCtgagtcctgcccaccagccg	13	16	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166039616	A	A	166039616	3	1	172	1	0	0	0	0	1	0	0	0	5680	796	28	3	141	3	FAM78B	1	166039616	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	506928	166039616	83211005	83	140509											
MPZL1	9019	broad.mit.edu	37	chr1	167745276	167745276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattattattttttacatttGttcttcaaattgccaattca	2	6	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167745276	T	T	167745276	1	4	172	0	1	0	0	0	0	0	0	0	9843	1392	48	3		3	MPZL1	1	167745276	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1705660	167745276	81505345	84	140510											
GPR161	23432	broad.mit.edu	37	chr1	168066241	168066241	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagcacaccagcatgaccaGaaaggggaagagggcacacc	12	11	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168066241	A	A	168066241	2	1	172	1	0	0	0	0	0	0	0	1	6730	933	33	4		4	GPR161	1	168066241	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	320965	168066241	81184380	85	140511											
F5	2153	broad.mit.edu	37	chr1	169525912	169525912	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttggggtgagagaagaTatgatccactttccctctgg	12	7	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169525912	C	C	169525912	3	2	172	1	0	0	0	0	1	0	0	0	5391	1396	49	5	5830	5	F5	1	169525912	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	1459671	169525912	79724709	86	140512											
BAT2L2	23215	broad.mit.edu	37	chr1	171504659	171504659	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaaccagaatcagggtctCaacctcggccggctgtatta	10	12	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171504659	T	T	171504659	4	4	172	1	0	0	0	0	0	1	0	0	1326	827	29	4	2006	4	BAT2L2	1	171504659	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1978747	171504659	77745962	87	140513											
C1orf9	51430	broad.mit.edu	37	chr1	172571257	172571257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggttctttgtgttgtcttGggactgatgctttgtatgca	12	5	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172571257	T	T	172571257	3	4	172	1	0	0	0	0	1	0	0	0	2089	1339	47	2	3154	2	C1orf9	1	172571257	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1066598	172571257	76679364	88	140514											
SLC9A11	284525	broad.mit.edu	37	chr1	173571086	173571086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccacactcagatctgaaCatgtctcttcttgtcacagg	8	12	5	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173571086	A	A	173571086	1	1	172	0	1	0	0	0	0	0	0	0	14825	493	17	3		3	SLC9A11	1	173571086	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	999829	173571086	75679535	89	140515											
TNN	63923	broad.mit.edu	37	chr1	175049402	175049402	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactacctcctcagctactaCcccctggggaaggagctctc	8	17	2	0	rs34902018		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175049402	A	A	175049402	4	1	172	1	0	0	0	0	0	1	0	0	16446	518	18	3	898	3	TNN	1	175049402	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1478316	175049402	74201219	90	140516											
TNN	63923	broad.mit.edu	37	chr1	175067610	175067611	+	Missense_Mutation	DNP	GG	TT	TT													gagaccagggaggttccggtGgggaaggagcagagcagcac							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	175067611	TT	TT	175067610	3	4	172	1	0	0	0	0	1	0	0	0	16446	1335	47	2	2028	2	TNN	1	175067610	Missense_Mutation	DNP	GG	TCGA-50-6594-01A-11D-1753-08	18208	175067610	74183011	91	140517											
PAPPA2	60676	broad.mit.edu	37	chr1	176709301	176709301	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcccagtaactgcatctcaGaggacgaggggcagaatcat	11	11	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176709301	T	T	176709301	4	4	172	1	0	0	0	0	0	1	0	0	11527	943	33	3	4223	3	PAPPA2	1	176709301	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1641691	176709301	72541320	92	140518											
ASTN1	460	broad.mit.edu	37	chr1	176903200	176903200	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgattgagtcgttactacAgactccttaaaatgggtctt	8	8	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176903200	C	C	176903200	1	2	172	0	1	0	0	0	0	0	0	0	1068	203	7	5		5	ASTN1	1	176903200	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	193899	176903200	72347421	93	140519											
ASTN1	460	broad.mit.edu	37	chr1	176934374	176934374	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattgtgtaaggccatggcCtaaaagaagaaacatcattc	8	7	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176934374	A	A	176934374	5	1	172	1	0	0	0	0	0	0	1	0	1068	695	24	2	2425	2	ASTN1	1	176934374	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	31174	176934374	72316247	94	140520											
ABL2	27	broad.mit.edu	37	chr1	179089220	179089220	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggacaacagagcgagaccCtgtctctatatttaaaaaga	8	9	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179089220	T	T	179089220	1	4	172	0	1	0	0	0	0	0	0	0	93	696	24	4		4	ABL2	1	179089220	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2154846	179089220	70161401	95	140521											
HMCN1	83872	broad.mit.edu	37	chr1	186106580	186106580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaaatgaaatctcctttaCaatgttttatttgcaaaagc	4	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186106580	A	A	186106580	1	1	172	0	1	0	0	0	0	0	0	0	7287	493	17	3		3	HMCN1	1	186106580	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	7017360	186106580	63144041	96	140522											
HMCN1	83872	broad.mit.edu	37	chr1	186135820	186135820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaccaaaaactttagtcCttcttgttcttttctagttt	3	10	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186135820	A	A	186135820	1	1	172	0	1	0	0	0	0	0	0	0	7287	696	24	2		2	HMCN1	1	186135820	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	29240	186135820	63114801	97	140523											
C1orf27	54953	broad.mit.edu	37	chr1	186359733	186359733	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtttagccatatatgttaGatatgagtttgtatgcgtta	11	3	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186359733	A	A	186359733	1	1	172	0	1	0	0	0	0	0	0	0	2058	957	33	4		4	C1orf27	1	186359733	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	223913	186359733	62890888	98	140524											
ASPM	259266	broad.mit.edu	37	chr1	197094378	197094378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacgtatatgaaaaaaccCttcactgaaatatagttatt	4	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197094378	A	A	197094378	1	1	172	0	1	0	0	0	0	0	0	0	1060	696	24	2		2	ASPM	1	197094378	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	10734645	197094378	52156243	99	140525											
PTPRC	5788	broad.mit.edu	37	chr1	198703333	198703333	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcaatagggtttcaaAgaacccaggaaatacattgc	8	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198703333	T	T	198703333	3	4	172	1	0	0	0	0	1	0	0	0	12905	69	3	5	2234	5	PTPRC	1	198703333	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1608955	198703333	50547288	100	140526											
CACNA1S	779	broad.mit.edu	37	chr1	201013705	201013705	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggagtgcagtggcacaatCtgagctcactgtaacctctg	11	11	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201013705	A	A	201013705	1	1	172	0	1	0	0	0	0	0	0	0	2573	928	32	3		3	CACNA1S	1	201013705	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2310372	201013705	48236916	101	140527											
CACNA1S	779	broad.mit.edu	37	chr1	201052196	201052196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcaatatctaattgacCtcttctgcacaacctgtggt	7	10	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201052196	A	A	201052196	1	1	172	0	1	0	0	0	0	0	0	0	2573	696	24	2		2	CACNA1S	1	201052196	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	38491	201052196	48198425	102	140528											
IGFN1	91156	broad.mit.edu	37	chr1	201196209	201196209	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaccccgcggtgtacagCactgacctgctgggcgtgtg	15	12	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201196209	G	G	201196209	3	3	172	1	0	0	0	0	1	0	0	0	7660	709	25	4	11072	4	IGFN1	1	201196209	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	144013	201196209	48054412	103	140529											
TNNT2	7139	broad.mit.edu	37	chr1	201337151	201337151	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgtttgttgattgggcaatCaatggttgaatcttagtcaa	10	5	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201337151	A	A	201337151	1	1	172	0	1	0	0	0	0	0	0	0	16454	841	29	3		3	TNNT2	1	201337151	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	140942	201337151	47913470	104	140530											
LGR6	59352	broad.mit.edu	37	chr1	202287530	202287530	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggcactggcagggctggCcgccgcgctgcccctggcct	15	18	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202287530	G	G	202287530	3	3	172	1	0	0	0	0	1	0	0	0	8830	739	26	4	2316	4	LGR6	1	202287530	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	950379	202287530	46963091	105	140531											
KDM5B	10765	broad.mit.edu	37	chr1	202736142	202736142	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggaatatcatggggtttgTactccttgtccttagtgtct	12	7	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202736142	A	A	202736142	3	1	172	1	0	0	0	0	1	0	0	0	8204	1638	57	5	4103	5	KDM5B	1	202736142	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	448612	202736142	46514479	106	140532											
CDK18	5129	broad.mit.edu	37	chr1	205497110	205497110	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagggtgtgggtgcagtggGggagggcatagcagtcaacc	19	7	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205497110	A	A	205497110	1	1	172	0	1	0	0	0	0	0	0	0	3164	1247	43	4		4	CDK18	1	205497110	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2760968	205497110	43753511	107	140533											
CD34	947	broad.mit.edu	37	chr1	208062250	208062250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaagtggagcccagcccGctccagccctctgtgtgtga	11	15	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208062250	T	T	208062250	1	4	172	0	1	0	0	0	0	0	0	0	3036	1102	38	3		3	CD34	1	208062250	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2565140	208062250	41188371	108	140534											
PROX1	5629	broad.mit.edu	37	chr1	214170994	214170994	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtggtcaaagtcttttcGgccaagccctcccgccaggt	10	14	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214170994	T	T	214170994	2	4	172	1	0	0	0	0	0	0	0	1	12666	1103	39	1		1	PROX1	1	214170994	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	6108744	214170994	35079627	109	140535											
USH2A	7399	broad.mit.edu	37	chr1	215847564	215847564	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggatgaagagggtataattGatgatatcaccatttgttct	10	5	2	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215847564	C	C	215847564	3	2	172	1	0	0	0	0	1	0	0	0	17162	1280	45	4	1959	4	USH2A	1	215847564	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1676570	215847564	33403057	110	140536											
USH2A	7399	broad.mit.edu	37	chr1	216262461	216262461	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgccatgatcattagttgtAgttacttccactggtgaccc	8	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216262461	G	G	216262461	2	3	172	1	0	0	0	0	0	0	0	1	17162	407	15	5		5	USH2A	1	216262461	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	414897	216262461	32988160	111	140537											
SPATA17	128153	broad.mit.edu	37	chr1	217955618	217955618	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgagttaaagttggccagaGaggagctcagaagagaggaa	15	4	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	217955618	C	C	217955618	3	2	172	1	0	0	0	0	1	0	0	0	15118	943	33	4	856	4	SPATA17	1	217955618	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1693157	217955618	31295003	112	140538											
FAM177B	400823	broad.mit.edu	37	chr1	222922752	222922752	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactctgggcatctcaactgAtgcgaagctttagttagtaa	9	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222922752	T	T	222922752	1	4	172	0	1	0	0	0	0	0	0	0	5547	348	12	5		5	FAM177B	1	222922752	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	4967134	222922752	26327869	113	140539											
DISP1	84976	broad.mit.edu	37	chr1	223178057	223178057	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacagttctagcttacacCcagctgggcaccttcatgat	7	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223178057	T	T	223178057	2	4	172	1	0	0	0	0	0	0	0	1	4579	610	22	4		4	DISP1	1	223178057	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	255305	223178057	26072564	114	140540											
COG2	22796	broad.mit.edu	37	chr1	230820988	230820988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttgtcaatgaggtaagGgctggctgtggagctcatcc	15	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230820988	T	T	230820988	1	4	172	0	1	0	0	0	0	0	0	0	3690	1247	43	2		2	COG2	1	230820988	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7642931	230820988	18429633	115	140541											
SIPA1L2	57568	broad.mit.edu	37	chr1	232568021	232568021	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcagtcacttcaggctcctCgggcggtgggctgccctccg	13	15	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232568021	A	A	232568021	4	1	172	1	0	0	0	0	0	1	0	0	14443	893	31	3	972	3	SIPA1L2	1	232568021	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1747033	232568021	16682600	116	140542											
RYR2	6262	broad.mit.edu	37	chr1	237494122	237494122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctcctaaggtaagctgGgtctggatgcttgatgaaga	14	7	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237494122	T	T	237494122	1	4	172	0	1	0	0	0	0	0	0	0	13880	1247	43	2		2	RYR2	1	237494122	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4926101	237494122	11756499	117	140543											
RYR2	6262	broad.mit.edu	37	chr1	237580393	237580393	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgtctgttcatgcacgttCcctttggagactagagacgc	11	10	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237580393	T	T	237580393	3	4	172	1	0	0	0	0	1	0	0	0	13880	855	30	4	860	4	RYR2	1	237580393	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	86271	237580393	11670228	118	140544											
RYR2	6262	broad.mit.edu	37	chr1	237732578	237732578	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaatccttcttgatgattCaggctcagaactggctttca	8	9	4	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237732578	A	A	237732578	4	1	172	1	0	0	0	0	0	1	0	0	13880	838	29	3	3671	3	RYR2	1	237732578	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	152185	237732578	11518043	119	140545											
RYR2	6262	broad.mit.edu	37	chr1	237969682	237969682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatgacaatgtacagtttTaaagatttttttgaagggag	9	3	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237969682	C	C	237969682	1	2	172	0	1	0	0	0	0	0	0	0	13880	1769	61	5		5	RYR2	1	237969682	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	237104	237969682	11280939	120	140546											
ZP4	57829	broad.mit.edu	37	chr1	238048734	238048734	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctgactcagggggtcagTgctgggtgttgcccaacact	15	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238048734	G	G	238048734	3	3	172	1	0	0	0	0	1	0	0	0	18347	1696	59	5	525	5	ZP4	1	238048734	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	79052	238048734	11201887	121	140547											
FMN2	56776	broad.mit.edu	37	chr1	240307117	240307117	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgctatcattccacaggCtagagctgtcacacctgcca	7	15	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240307117	T	T	240307117	1	4	172	0	1	0	0	0	0	0	0	0	6008	812	28	4		4	FMN2	1	240307117	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2258383	240307117	8943504	122	140548											
FMN2	56776	broad.mit.edu	37	chr1	240374282	240374282	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatctctcttctttttccctCcttccctcctgctggccttc	3	18	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240374282	A	A	240374282	1	1	172	0	1	0	0	0	0	0	0	0	6008	870	30	3		3	FMN2	1	240374282	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	67165	240374282	8876339	123	140549											
FMN2	56776	broad.mit.edu	37	chr1	240635819	240635819	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctattttcataatatatAcaaactcataatattttaat	0	6	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240635819	G	G	240635819	1	3	172	0	1	0	0	0	0	0	0	0	6008	406	14	5		5	FMN2	1	240635819	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	261537	240635819	8614802	124	140550											
RGS7	6000	broad.mit.edu	37	chr1	240990412	240990412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaccttccgtgttttgtGggggtttctcattctggatg	11	7	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240990412	T	T	240990412	3	4	172	1	0	0	0	0	1	0	0	0	13419	1348	47	2	829	2	RGS7	1	240990412	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	354593	240990412	8260209	125	140551											
CNST	163882	broad.mit.edu	37	chr1	246823460	246823460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacatgtagagatgtcccGccttaataaaagaattatag	8	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246823460	T	T	246823460	1	4	172	0	1	0	0	0	0	0	0	0	3666	1102	38	3		3	CNST	1	246823460	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5833048	246823460	2427161	126	140552											
OR2L13	284521	broad.mit.edu	37	chr1	248185161	248185161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggcattcactggaggcCttggaatgcaacccctgcag	11	12	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248185161	A	A	248185161	1	1	172	0	1	0	0	0	0	0	0	0	11100	696	24	2		2	OR2L13	1	248185161	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1361701	248185161	1065460	127	140553											
OR2L13	284521	broad.mit.edu	37	chr1	248247679	248247680	+	Intron	DNP	GG	TT	TT													gccattttgggcacagtggtGgaaaccagcatcacgtccat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	248247680	TT	TT	248247679	1	4	172	0	1	0	0	0	0	0	0	0	11100	1363	47	2		2	OR2L13	1	248247679	Intron	DNP	GG	TCGA-50-6594-01A-11D-1753-08	62518	248247679	1002942	128	140554											
OR2L13	284521	broad.mit.edu	37	chr1	248262995	248262995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttcttcttcctgaccatGgcgtgttctgaaggcttact	9	11	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248262995	T	T	248262995	3	4	172	1	0	0	0	0	1	0	0	0	11100	1348	47	2	320	2	OR2L13	1	248262995	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	15316	248262995	987626	129	140555											
OR2M5	127059	broad.mit.edu	37	chr1	248308657	248308657	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagtcaactgttcctcatgGacctcatgctcatctgctct	6	14	7	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248308657	C	C	248308657	3	2	172	1	0	0	0	0	1	0	0	0	11107	1174	41	4	210	4	OR2M5	1	248308657	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	45662	248308657	941964	130	140556											
OR2T33	391195	broad.mit.edu	37	chr1	248436889	248436889	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtcagccgccattttgggCacagtggtggaaaccagcat	12	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248436889	G	G	248436889	2	3	172	1	0	0	0	0	0	0	0	1	11118	697	25	4		4	OR2T33	1	248436889	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	128232	248436889	813732	131	140557											
OR2T4	127074	broad.mit.edu	37	chr1	248525735	248525735	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggtcatcctcttctatGgggctgccatctacacctac	8	14	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248525735	C	C	248525735	3	2	172	1	0	0	0	0	1	0	0	0	11121	1348	47	4	855	4	OR2T4	1	248525735	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	88846	248525735	724886	132	140558											
OR2G6	391211	broad.mit.edu	37	chr1	248684970	248684970	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggaaaccaacaacagctCtgaaaagggatttcttctcc	9	10	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248684970	A	A	248684970	3	1	172	1	0	0	0	0	1	0	0	0	11094	913	32	3	25	3	OR2G6	1	248684970	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	159235	248684970	565651	133	140559											
OR2T34	127068	broad.mit.edu	37	chr1	248737546	248737546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctagactggcaaaagggGaagctcatggtaatgggggt	15	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248737546	T	T	248737546	3	4	172	1	0	0	0	0	1	0	0	0	11119	1165	41	3	447	3	OR2T34	1	248737546	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	52576	248737546	513075	134	140560											
SNTG2	54221	broad.mit.edu	37	chr2	1168598	1168598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggtcagatcttggtgaGgagaccatatcacagcagga	13	8	3	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1168598	T	T	1168598	1	4	172	0	1	0	0	0	0	0	0	0	14989	1015	35	2		2	SNTG2	2	1168598	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08		1168598	242030775	135	140561											
TPO	7173	broad.mit.edu	37	chr2	1439923	1439923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagttacatatgaatccCaaattcagatgctggagtca	7	11	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1439923	A	A	1439923	1	1	172	0	1	0	0	0	0	0	0	0	16534	609	21	2		2	TPO	2	1439923	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	271325	1439923	241759450	136	140562											
COLEC11	78989	broad.mit.edu	37	chr2	3691504	3691504	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcccgtgtcttcatcggCatcaacgacctggagaagga	12	12	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3691504	T	T	3691504	2	4	172	1	0	0	0	0	0	0	0	1	3743	697	25	4		4	COLEC11	2	3691504	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	2251581	3691504	239507869	137	140563											
ASAP2	8853	broad.mit.edu	37	chr2	9463317	9463317	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattcggactgaaataagcGgagcggaaattgccgaagag	14	6	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9463317	T	T	9463317	4	4	172	1	0	0	0	0	0	1	0	0	1015	1117	39	1	560	1	ASAP2	2	9463317	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	5771813	9463317	233736056	138	140564											
ITGB1BP1	9270	broad.mit.edu	37	chr2	9547108	9547108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaatttggctagcagaggCacacacctgaccctcttaag	8	12	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9547108	A	A	9547108	1	1	172	0	1	0	0	0	0	0	0	0	7961	725	25	3		3	ITGB1BP1	2	9547108	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	83791	9547108	233652265	139	140565											
GREB1	9687	broad.mit.edu	37	chr2	11728879	11728879	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttcctctgcaggccatggGaacttcccttacctctgtgg	10	13	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11728879	T	T	11728879	2	4	172	1	0	0	0	0	0	0	0	1	6826	1161	41	3		3	GREB1	2	11728879	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2181771	11728879	231470494	140	140566											
NBAS	51594	broad.mit.edu	37	chr2	15372560	15372560	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaccccttgtccacactGgcgtggactgctgcaacaac	8	15	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15372560	T	T	15372560	2	4	172	1	0	0	0	0	0	0	0	1	10280	1335	47	2		2	NBAS	2	15372560	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	3643681	15372560	227826813	141	140567											
RAD51AP2	729475	broad.mit.edu	37	chr2	17697542	17697542	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacattcacaacttgttgaGgacaactcatattctgacaa	5	11	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17697542	A	A	17697542	3	1	172	1	0	0	0	0	1	0	0	0	13095	1000	35	4	1350	4	RAD51AP2	2	17697542	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2324982	17697542	225501831	142	140568											
MSGN1	343930	broad.mit.edu	37	chr2	17998189	17998189	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccagcgagagggagaagcTcaggatgaggaccttggcag	17	8	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17998189	G	G	17998189	3	3	172	1	0	0	0	0	1	0	0	0	9963	1551	54	5	406	5	MSGN1	2	17998189	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	300647	17998189	225201184	143	140569											
PUM2	23369	broad.mit.edu	37	chr2	20483206	20483206	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggccaaccactaaggcacCagtctgatcataataggcag	10	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20483206	T	T	20483206	3	4	172	1	0	0	0	0	1	0	0	0	12934	594	21	4	1905	4	PUM2	2	20483206	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2485017	20483206	222716167	144	140570											
APOB	338	broad.mit.edu	37	chr2	21224591	21224591	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaagaataaatgaagatttCttttaaaaaattagaggatg	8	1	1	5	rs72654428	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21224591	G	G	21224591	1	3	172	0	1	0	0	0	0	0	0	0	787	928	32	4		4	APOB	2	21224591	3'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	741385	21224591	221974782	145	140571											
APOB	338	broad.mit.edu	37	chr2	21251398	21251398	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaaggaaagtctgaagaaGaacctcctggtcctgcagtc	10	10	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21251398	T	T	21251398	3	4	172	1	0	0	0	0	1	0	0	0	787	942	33	3	12129	3	APOB	2	21251398	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	26807	21251398	221947975	146	140572											
APOB	338	broad.mit.edu	37	chr2	21256487	21256487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggagtatcagcacaggGgaaaagggaaagaaactatc	13	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21256487	T	T	21256487	1	4	172	0	1	0	0	0	0	0	0	0	787	1247	43	2		2	APOB	2	21256487	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5089	21256487	221942886	147	140573											
ADCY3	109	broad.mit.edu	37	chr2	25095595	25095596	+	Intron	INS	-	A	A													cgttggccaggatctgcaccINSccaaggaagaagagagaaaa							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25095596	A	A	25095595	6	5	172	0	1	1	1	0	0	0	0	0	295	638	22	0		0	ADCY3	2	25095595	Intron	INS	-	TCGA-50-6594-01A-11D-1753-08	3839108	25095595	218103778	148	140574											
CIB4	130106	broad.mit.edu	37	chr2	26817904	26817904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttattccatggtacatgCaaaatatgacacagacccac	5	10	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26817904	A	A	26817904	1	1	172	0	1	0	0	0	0	0	0	0	3454	725	25	3		3	CIB4	2	26817904	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1722309	26817904	216381469	149	140575											
MAPRE3	22924	broad.mit.edu	37	chr2	27247075	27247075	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggaaaggattacaaccctCtgctggcgcggcagggccag	14	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27247075	G	G	27247075	3	3	172	1	0	0	0	0	1	0	0	0	9388	912	32	4	389	4	MAPRE3	2	27247075	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	429171	27247075	215952298	150	140576											
KHK	3795	broad.mit.edu	37	chr2	27315392	27315392	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggatgtatccaccctGggtggatgggggattagaaa	15	5	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27315392	T	T	27315392	1	4	172	0	1	0	0	0	0	0	0	0	8219	1363	47	2		2	KHK	2	27315392	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	68317	27315392	215883981	151	140577											
TRIM54	57159	broad.mit.edu	37	chr2	27522076	27522076	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtattcctaggacccttcatGcttaaggtccacctccccct	6	16	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27522076	C	C	27522076	1	2	172	0	1	0	0	0	0	0	0	0	16653	1334	46	4		4	TRIM54	2	27522076	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	206684	27522076	215677297	152	140578											
GALNT14	79623	broad.mit.edu	37	chr2	31189191	31189191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaaggaaaggcacagggCaagtgagaccttcagggaca	17	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31189191	A	A	31189191	1	1	172	0	1	0	0	0	0	0	0	0	6274	725	25	3		3	GALNT14	2	31189191	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3667115	31189191	212010182	153	140579											
EHD3	30845	broad.mit.edu	37	chr2	31483646	31483646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctacatcggctccttctGgtcccaccccctcctcatcc	6	20	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31483646	T	T	31483646	3	4	172	1	0	0	0	0	1	0	0	0	5019	1357	47	2	787	2	EHD3	2	31483646	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	294455	31483646	211715727	154	140580											
XDH	7498	broad.mit.edu	37	chr2	31625983	31625983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcagcccccctctccaCagccgagcttggttccactc	7	22	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31625983	A	A	31625983	3	1	172	1	0	0	0	0	1	0	0	0	17553	478	17	3	4009	3	XDH	2	31625983	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	142337	31625983	211573390	155	140581											
LTBP1	4052	broad.mit.edu	37	chr2	33518427	33518427	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaattagccttagaaaaGggaaccctgctacctgtgtt	10	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33518427	A	A	33518427	1	1	172	0	1	0	0	0	0	0	0	0	9160	1015	35	4		4	LTBP1	2	33518427	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1892444	33518427	209680946	156	140582											
STRN	6801	broad.mit.edu	37	chr2	37152241	37152241	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaccacttttcattttactGaattacctttcctgtttaag	3	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37152241	A	A	37152241	1	1	172	0	1	0	0	0	0	0	0	0	15447	1305	45	4		4	STRN	2	37152241	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3633814	37152241	206047132	157	140583											
C2orf56	55471	broad.mit.edu	37	chr2	37469751	37469754	+	Intron	DEL	ATTA	-	-													ttcctgtgaaatgtggaaacAttaattgttttcctcttttt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37469754	-	-	37469751	6	5	172	0	1	1	0	1	0	0	0	0	2199	232	8	0		0	C2orf56	2	37469751	Intron	DEL	ATTA	TCGA-50-6594-01A-11D-1753-08	317510	37469751	205729622	158	140584											
FAM82A1	151393	broad.mit.edu	37	chr2	38294239	38294239	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtgaagtcaagtatttTtaccaagtaaaaagattggc	8	7	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38294239	G	G	38294239	1	3	172	0	1	0	0	0	0	0	0	0	5683	1856	64	5		5	FAM82A1	2	38294239	3'UTR	SNP	T	TCGA-50-6594-01A-11D-1753-08	824488	38294239	204905134	159	140585											
SLC8A1	6546	broad.mit.edu	37	chr2	40657385	40657385	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaaatcccattgaaaaGgtgggtgaaagacttaatcg	11	5	0	5			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40657385	T	T	40657385	2	4	172	1	0	0	0	0	0	0	0	1	14820	987	35	2		2	SLC8A1	2	40657385	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2363146	40657385	202541988	160	140586											
ABCG5	64240	broad.mit.edu	37	chr2	44064972	44064972	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcctccttcccaagcttaCctgagcttcctaggatgcac	6	15	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44064972	A	A	44064972	5	1	172	1	0	0	0	0	0	0	1	0	71	521	18	3	1737	3	ABCG5	2	44064972	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	3407587	44064972	199134401	161	140587											
ABCG8	64241	broad.mit.edu	37	chr2	44101693	44101693	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtgtggagaaaacgttgCtacaaggaaggcttttctga	12	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44101693	A	A	44101693	1	1	172	0	1	0	0	0	0	0	0	0	72	812	28	3		3	ABCG8	2	44101693	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	36721	44101693	199097680	162	140588											
CRIPT	9419	broad.mit.edu	37	chr2	46846824	46846824	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcaaaaaaagcaaggtgGgtaagaggatccatcgatgg	12	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46846824	T	T	46846824	1	4	172	0	1	0	0	0	0	0	0	0	3910	1247	43	2		2	CRIPT	2	46846824	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2745131	46846824	196352549	163	140589											
USP34	9736	broad.mit.edu	37	chr2	61431428	61431428	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgggcaagaggcacataTtgagttcagggcgcggaggc	17	7	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61431428	C	C	61431428	3	2	172	1	0	0	0	0	1	0	0	0	17192	1493	52	5	1321	5	USP34	2	61431428	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	14584604	61431428	181767945	164	140590											
USP34	9736	broad.mit.edu	37	chr2	61455909	61455909	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaataaaagcaattaagttgCaaatactgaaaaaaggtaga	7	3	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61455909	G	G	61455909	1	3	172	0	1	0	0	0	0	0	0	0	17192	725	25	4		4	USP34	2	61455909	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	24481	61455909	181743464	165	140591											
SLC1A4	6509	broad.mit.edu	37	chr2	65245590	65245590	+	Intron	SNP	C	T	T													ggtggggcggtttttagtttCcagccacattgcagctgcat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65245590	T	T	65245590	1	4	172	0	1	0	0	0	0	0	0	0	14547	870	30	4		4	SLC1A4	2	65245590	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3789681	65245590	177953783	166	140592	602	2									
SLC1A4	6509	broad.mit.edu	37	chr2	65245592	65245592	+	Intron	SNP	A	T	T													tggggcggtttttagtttccAgccacattgcagctgcatgg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65245592	T	T	65245592	1	4	172	0	1	0	0	0	0	0	0	0	14547	203	7	5		5	SLC1A4	2	65245592	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2	65245592	177953781	167	140593	602	2									
EGR4	1961	broad.mit.edu	37	chr2	73518710	73518710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcgctgcgcgcgaagcGgcggccgcacacgtcgcaag	14	16	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73518710	T	T	73518710	3	4	172	1	0	0	0	0	1	0	0	0	5014	1116	39	1	128	1	EGR4	2	73518710	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	8273118	73518710	169680663	168	140594											
HK2	3099	broad.mit.edu	37	chr2	75061718	75061718	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgcggcaggatgattgcctCgcatctgcttgcctacttct	10	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75061718	T	T	75061718	3	4	172	1	0	0	0	0	1	0	0	0	7258	893	31	4	13	4	HK2	2	75061718	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1543008	75061718	168137655	169	140595											
TACR1	6869	broad.mit.edu	37	chr2	75276688	75276688	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcctctggctcctcctcGtgggcccccaccactgtgga	10	19	1	0	rs150773283		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75276688	A	A	75276688	2	1	172	1	0	0	0	0	0	0	0	1	15624	1136	40	4		4	TACR1	2	75276688	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	214970	75276688	167922685	170	140596											
REG3G	130120	broad.mit.edu	37	chr2	79254365	79254365	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcccaggcgcactccctgtCcccagtccctgcccaggaag	10	19	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79254365	G	G	79254365	1	3	172	0	1	0	0	0	0	0	0	0	13321	870	30	4		4	REG3G	2	79254365	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3977677	79254365	163945008	171	140597											
REG1B	5968	broad.mit.edu	37	chr2	79312761	79312761	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggccagaacaggggccatGgtcactcaaaaatcaataga	11	9	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79312761	A	A	79312761	1	1	172	0	1	0	0	0	0	0	0	0	13319	1363	47	4		4	REG1B	2	79312761	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	58396	79312761	163886612	172	140598											
POLR1A	25885	broad.mit.edu	37	chr2	86260759	86260759	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtccctgtgcaactcTagtgacccccggggactcac	12	15	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86260759	C	C	86260759	1	2	172	0	1	0	0	0	0	0	0	0	12304	1537	53	5		5	POLR1A	2	86260759	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	6947998	86260759	156938614	173	140599											
INPP4A	3631	broad.mit.edu	37	chr2	99170827	99170827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgactacattgcctccaagGcctctcccacttcgactgag	7	16	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99170827	T	T	99170827	3	4	172	1	0	0	0	0	1	0	0	0	7822	1203	42	3	1510	3	INPP4A	2	99170827	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	12910068	99170827	144028546	174	140600											
MRPL30	51263	broad.mit.edu	37	chr2	99811100	99811100	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaggattacatgatgattaAggatgaggtaattatgtagt	12	1	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99811100	T	T	99811100	1	4	172	0	1	0	0	0	0	0	0	0	9888	87	3	5		5	MRPL30	2	99811100	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	640273	99811100	143388273	175	140601											
AFF3	3899	broad.mit.edu	37	chr2	100368631	100368631	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaaagcccactgcccactaGaaatgcctgcatgagtgaaa	9	11	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100368631	C	C	100368631	1	2	172	0	1	0	0	0	0	0	0	0	358	957	33	4		4	AFF3	2	100368631	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	557531	100368631	142830742	176	140602											
ST6GAL2	84620	broad.mit.edu	37	chr2	107423189	107423189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaccgcctggaagccgGgaagaaccaccttgcccttg	12	14	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107423189	T	T	107423189	3	4	172	1	0	0	0	0	1	0	0	0	15340	1232	43	2	58	2	ST6GAL2	2	107423189	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	7054558	107423189	135776184	177	140603											
RGPD4	285190	broad.mit.edu	37	chr2	108496518	108496518	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcacttaaacggcctgctTcgggaagcagaggcaaccag	12	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108496518	A	A	108496518	2	1	172	1	0	0	0	0	0	0	0	1	13396	1770	62	5		5	RGPD4	2	108496518	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	1073329	108496518	134702855	178	140604											
RANBP2	5903	broad.mit.edu	37	chr2	109389243	109389243	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttgttacctgggtctgtgGattatgttgatgactaccat	10	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109389243	A	A	109389243	1	1	172	0	1	0	0	0	0	0	0	0	13136	1189	41	4		4	RANBP2	2	109389243	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	892725	109389243	133810130	179	140605											
MERTK	10461	broad.mit.edu	37	chr2	112786078	112786078	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcaatacacagttgctggaGagctctgagggcctggccca	13	11	2	2	rs139897984		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112786078	A	A	112786078	2	1	172	1	0	0	0	0	0	0	0	1	9572	933	33	4		4	MERTK	2	112786078	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	3396835	112786078	130413295	180	140606											
IL1F9	56300	broad.mit.edu	37	chr2	113742503	113742503	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagactggtaggacctccacCcttgagtctgtggccttccc	10	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113742503	A	A	113742503	2	1	172	1	0	0	0	0	0	0	0	1	7727	610	22	2		2	IL1F9	2	113742503	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	956425	113742503	129456870	181	140607											
DPP10	57628	broad.mit.edu	37	chr2	116510839	116510839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagaacatctccatcctcaCagtctgtgagaccactacag	6	14	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116510839	T	T	116510839	3	4	172	1	0	0	0	0	1	0	0	0	4767	478	17	4	1253	4	DPP10	2	116510839	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2768336	116510839	126688534	182	140608											
MARCO	8685	broad.mit.edu	37	chr2	119731997	119731997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggagccaagggggctatGggacgagatggagcaacagg	19	6	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119731997	T	T	119731997	3	4	172	1	0	0	0	0	1	0	0	0	9403	1348	47	2	567	2	MARCO	2	119731997	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3221158	119731997	123467376	183	140609											
CNTNAP5	129684	broad.mit.edu	37	chr2	125405480	125405480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatcgacggctctgagcaCtgtgagcaggaggtggccta	16	9	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125405480	A	A	125405480	3	1	172	1	0	0	0	0	1	0	0	0	3682	564	20	3	2069	3	CNTNAP5	2	125405480	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	5673483	125405480	117793893	184	140610											
POLR2D	5433	broad.mit.edu	37	chr2	128610417	128610417	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttaaattcacaagtgacaCctgggaaagggggaggggac	14	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128610417	T	T	128610417	1	4	172	0	1	0	0	0	0	0	0	0	12312	522	18	4		4	POLR2D	2	128610417	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3204937	128610417	114588956	185	140611											
LCT	3938	broad.mit.edu	37	chr2	136566900	136566900	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgttgcttgccaccaagCcattgatcagcctgttgtaa	9	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136566900	T	T	136566900	3	4	172	1	0	0	0	0	1	0	0	0	8765	739	26	4	2806	4	LCT	2	136566900	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	7956483	136566900	106632473	186	140612											
LRP1B	53353	broad.mit.edu	37	chr2	141660833	141660833	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaagcctacaattagccagGatactacaaatgaatataag	6	8	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141660833	T	T	141660833	1	4	172	0	1	0	0	0	0	0	0	0	9042	1189	41	3		3	LRP1B	2	141660833	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5093933	141660833	101538540	187	140613											
KYNU	8942	broad.mit.edu	37	chr2	143685270	143685270	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaagcgtccttggattacAggagatgagagtattgtagg	16	4	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143685270	G	G	143685270	2	3	172	1	0	0	0	0	0	0	0	1	8659	175	7	5		5	KYNU	2	143685270	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	2024437	143685270	99514103	188	140614											
KYNU	8942	broad.mit.edu	37	chr2	143712385	143712385	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttattttacaggagccaAtgagaaagaaatagccctaa	8	6	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143712385	G	G	143712385	3	3	172	1	0	0	0	0	1	0	0	0	8659	101	4	5	394	5	KYNU	2	143712385	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	27115	143712385	99486988	189	140615											
GTDC1	79712	broad.mit.edu	37	chr2	144714907	144714907	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggcctctgaaaaaatatCttttaaaaacaagaaaaaga	5	5	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144714907	A	A	144714907	5	1	172	1	0	0	0	0	0	0	1	0	6916	927	32	3	407	3	GTDC1	2	144714907	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	1002522	144714907	98484466	190	140616											
NR4A2	4929	broad.mit.edu	37	chr2	157183331	157183331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccagggatcttctctgcCcagccccggatgatctccat	9	15	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157183331	A	A	157183331	3	1	172	1	0	0	0	0	1	0	0	0	10728	624	22	2	548	2	NR4A2	2	157183331	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	12468424	157183331	86016042	191	140617											
GALNT5	11227	broad.mit.edu	37	chr2	158114923	158114923	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacttggaccaaacccagaGggaaagaaaaatgcagaatg	12	7	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158114923	A	A	158114923	3	1	172	1	0	0	0	0	1	0	0	0	6278	1000	35	4	331	4	GALNT5	2	158114923	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	931592	158114923	85084450	192	140618											
KCNH7	90134	broad.mit.edu	37	chr2	163374550	163374550	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaatgcttcatggctacTgaatcatcactgtgtttaga	7	7	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163374550	C	C	163374550	2	2	172	1	0	0	0	0	0	0	0	1	8107	1567	55	5		5	KCNH7	2	163374550	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	5259627	163374550	79824823	193	140619											
KCNH7	90134	broad.mit.edu	37	chr2	163393400	163393400	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactacagtagcagaattaTcaagagcattgagtacacat	8	7	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163393400	A	A	163393400	1	1	172	0	1	0	0	0	0	0	0	0	8107	1450	50	5		5	KCNH7	2	163393400	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	18850	163393400	79805973	194	140620											
FIGN	55137	broad.mit.edu	37	chr2	164467657	164467657	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggaccaaggctggtgGcggaggaggtggtggtgggg	24	6	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164467657	A	A	164467657	3	1	172	1	0	0	0	0	1	0	0	0	5948	1203	42	4	1598	4	FIGN	2	164467657	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1074257	164467657	78731716	195	140621											
B3GALT1	8708	broad.mit.edu	37	chr2	168726546	168726546	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttaggatttttaccaatgtAaatatgtttcttttcttttt	5	4	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168726546	T	T	168726546	1	4	172	0	1	0	0	0	0	0	0	0	1252	377	13	5		5	B3GALT1	2	168726546	3'UTR	SNP	A	TCGA-50-6594-01A-11D-1753-08	4258889	168726546	74472827	196	140622											
SPC25	57405	broad.mit.edu	37	chr2	169745772	169745772	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacatctcaaccattcgttCttcttcctttaatttcacag	2	12	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169745772	G	G	169745772	3	3	172	1	0	0	0	0	1	0	0	0	15138	922	32	4	531	4	SPC25	2	169745772	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1019226	169745772	73453601	197	140623											
ABCB11	8647	broad.mit.edu	37	chr2	169780177	169780177	+	Frame_Shift_Del	DEL	T	-	-													actagtttgtagtaggctccTttttgggccatcagttcttc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169780177	-	-	169780177	7	5	172	1	0	1	0	1	0	0	0	0	42	1606	56	0	48	0	ABCB11	2	169780177	Frame_Shift_Del	DEL	T	TCGA-50-6594-01A-11D-1753-08	34405	169780177	73419196	198	140624											
ABCB11	8647	broad.mit.edu	37	chr2	169850174	169850174	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacatttttggctgtttaTgaaggcaaatgtcttcccat	7	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169850174	C	C	169850174	1	2	172	0	1	0	0	0	0	0	0	0	42	1479	51	5		5	ABCB11	2	169850174	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	69997	169850174	73349199	199	140625											
DCAF17	80067	broad.mit.edu	37	chr2	172337513	172337513	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaagtctactttgacagAgacttggtgctacacataga	9	8	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172337513	G	G	172337513	2	3	172	1	0	0	0	0	0	0	0	1	4302	301	11	5		5	DCAF17	2	172337513	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	2487339	172337513	70861860	200	140626											
HAT1	8520	broad.mit.edu	37	chr2	172821868	172821868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattctttaggcagatgatGttgagggcaaaattagacaa	10	4	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172821868	T	T	172821868	3	4	172	1	0	0	0	0	1	0	0	0	7030	1377	48	3	337	3	HAT1	2	172821868	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	484355	172821868	70377505	201	140627											
MAP1D	254042	broad.mit.edu	37	chr2	172942609	172942609	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactttcatggacatccagaAatttggcatcatggtaagaa	8	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172942609	C	C	172942609	3	2	172	1	0	0	0	0	1	0	0	0	9321	11	1	5	815	5	MAP1D	2	172942609	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	120741	172942609	70256764	202	140628											
DFNB59	494513	broad.mit.edu	37	chr2	179319922	179319922	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagaagatggagtggtggAgccgcttggtgtccagtgac	16	7	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179319922	C	C	179319922	1	2	172	0	1	0	0	0	0	0	0	0	4496	319	11	5		5	DFNB59	2	179319922	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	6377313	179319922	63879451	203	140629											
TTN	7273	broad.mit.edu	37	chr2	179401683	179401683	+	Frame_Shift_Del	DEL	T	-	-													accaaatggactcttaatgaTcacaactgaggacacttcta							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179401683	-	-	179401683	7	5	172	1	0	1	0	1	0	0	0	0	16861	1435	50	0	7854	0	TTN	2	179401683	Frame_Shift_Del	DEL	T	TCGA-50-6594-01A-11D-1753-08	81761	179401683	63797690	204	140630											
TTN	7273	broad.mit.edu	37	chr2	179433110	179433110	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttggcagccccctgtatAtaatggagggttccaagata	11	8	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179433110	G	G	179433110	3	3	172	1	0	0	0	0	1	0	0	0	16861	449	16	5	30378	5	TTN	2	179433110	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	31427	179433110	63766263	205	140631											
TTN	7273	broad.mit.edu	37	chr2	179583250	179583250	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagattggaggtgtgccagTgtatgtggcctcgagaacta	15	6	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179583250	A	A	179583250	3	1	172	1	0	0	0	0	1	0	0	0	16861	1696	59	5	80058	5	TTN	2	179583250	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	150140	179583250	63616123	206	140632											
TTN	7273	broad.mit.edu	37	chr2	179587299	179587299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagacatgtaatacttaaGgtgttaggagatgaaatgag	14	2	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179587299	T	T	179587299	1	4	172	0	1	0	0	0	0	0	0	0	16861	1015	35	2		2	TTN	2	179587299	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4049	179587299	63612074	207	140633											
SESTD1	91404	broad.mit.edu	37	chr2	180041248	180041248	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacaatcacggtaaatcctCtagccttacacttctcactg	4	15	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180041248	A	A	180041248	3	1	172	1	0	0	0	0	1	0	0	0	14240	913	32	3	1968	3	SESTD1	2	180041248	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	453949	180041248	63158125	208	140634											
DNAJC10	54431	broad.mit.edu	37	chr2	183605255	183605255	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggattatatattagtcaAttgtaggttaaattctaatt	6	2	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183605255	G	G	183605255	1	3	172	0	1	0	0	0	0	0	0	0	4669	116	4	5		5	DNAJC10	2	183605255	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3564007	183605255	59594118	209	140635											
ZNF804A	91752	broad.mit.edu	37	chr2	185803037	185803037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctaaatcctatctttgcCattatgaactggctgaggcc	8	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803037	A	A	185803037	3	1	172	1	0	0	0	0	1	0	0	0	18299	594	21	2	2928	2	ZNF804A	2	185803037	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2197782	185803037	57396336	210	140636											
ITGAV	3685	broad.mit.edu	37	chr2	187511634	187511634	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcaacacatagagcccttAgatttttcagtcctaatagc	5	10	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187511634	G	G	187511634	1	3	172	0	1	0	0	0	0	0	0	0	7958	435	15	5		5	ITGAV	2	187511634	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1708597	187511634	55687739	211	140637											
COL5A2	1290	broad.mit.edu	37	chr2	189915945	189915945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaattttaggaatgtgcCcagcataatatttaagcatt	6	5	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189915945	A	A	189915945	1	1	172	0	1	0	0	0	0	0	0	0	3729	638	22	2		2	COL5A2	2	189915945	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2404311	189915945	53283428	212	140638											
COL5A2	1290	broad.mit.edu	37	chr2	189925510	189925510	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaggaccaggaagcccCtaaaacaaaagtaagaaaat	9	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189925510	A	A	189925510	5	1	172	1	0	0	0	0	0	0	1	0	3729	695	24	2	2564	2	COL5A2	2	189925510	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	9565	189925510	53273863	213	140639											
SATB2	23314	broad.mit.edu	37	chr2	200188633	200188633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtgatgttgatgttggCgccgtccaccttaataggga	13	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200188633	A	A	200188633	3	1	172	1	0	0	0	0	1	0	0	0	13966	768	27	3	778	3	SATB2	2	200188633	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	10263123	200188633	43010740	214	140640											
ORC2L	4999	broad.mit.edu	37	chr2	201800586	201800586	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagttggaagcagaatattCgctttcactgtcagaatgag	11	6	2	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201800586	A	A	201800586	4	1	172	1	0	0	0	0	0	1	0	0	11356	893	31	3	1229	3	ORC2L	2	201800586	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1611953	201800586	41398787	215	140641											
ORC2L	4999	broad.mit.edu	37	chr2	201822281	201822281	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagctcctataagaacatcCaaagaaatagagcatgacag	7	8	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201822281	G	G	201822281	1	3	172	0	1	0	0	0	0	0	0	0	11356	609	21	4		4	ORC2L	2	201822281	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	21695	201822281	41377092	216	140642											
ALS2CR11	151254	broad.mit.edu	37	chr2	202483860	202483860	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtggctccatctctccAtcttctgcggcctgtctgcg	12	14	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202483860	G	G	202483860	1	3	172	0	1	0	0	0	0	0	0	0	552	232	8	5		5	ALS2CR11	2	202483860	5'UTR	SNP	A	TCGA-50-6594-01A-11D-1753-08	661579	202483860	40715513	217	140643											
ALS2CR8	79800	broad.mit.edu	37	chr2	203789674	203789674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctaaacaagtttgccccCttcactgagaaggtaccctt	6	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203789674	T	T	203789674	1	4	172	0	1	0	0	0	0	0	0	0	555	696	24	4		4	ALS2CR8	2	203789674	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1305814	203789674	39409699	218	140644											
TNS1	7145	broad.mit.edu	37	chr2	218675013	218675013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagttgagttggcagggcCggagctatctttcgattcat	13	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218675013	A	A	218675013	3	1	172	1	0	0	0	0	1	0	0	0	16466	652	23	1	477	1	TNS1	2	218675013	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	14885339	218675013	24524360	219	140645											
CCDC108	255101	broad.mit.edu	37	chr2	219874056	219874056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcccactttacccctggGgctggttcctaccttgcata	7	16	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219874056	T	T	219874056	1	4	172	0	1	0	0	0	0	0	0	0	2769	1247	43	2		2	CCDC108	2	219874056	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1199043	219874056	23325317	220	140646											
PTPRN	5798	broad.mit.edu	37	chr2	220172160	220172160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctccagtgcacccagaCcttaccttgggacatgagtt	8	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220172160	T	T	220172160	1	4	172	0	1	0	0	0	0	0	0	0	12915	522	18	4		4	PTPRN	2	220172160	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	298104	220172160	23027213	221	140647											
SP140	11262	broad.mit.edu	37	chr2	231149104	231149104	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagaatgagaatgagaagGcaggaaaacagccaacaaaa	11	6	0	3	rs142957886		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231149104	C	C	231149104	3	2	172	1	0	0	0	0	1	0	0	0	15076	1194	42	4	1721	4	SP140	2	231149104	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	10976944	231149104	12050269	222	140648											
NGEF	25791	broad.mit.edu	37	chr2	233791842	233791842	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgtggtggggctgtcggcCagggccggccactcctcggg	19	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233791842	A	A	233791842	2	1	172	1	0	0	0	0	0	0	0	1	10489	581	21	2		2	NGEF	2	233791842	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	2642738	233791842	9407531	223	140649											
AGAP1	116987	broad.mit.edu	37	chr2	236706531	236706531	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgtgcacatcagccagGtacgttaggtgacatgagaa	12	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236706531	T	T	236706531	5	4	172	1	0	0	0	0	0	0	1	0	366	1275	44	3	828	3	AGAP1	2	236706531	Splice_Site	SNP	G	TCGA-50-6594-01A-11D-1753-08	2914689	236706531	6492842	224	140650											
KIF1A	547	broad.mit.edu	37	chr2	241726813	241726813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgcgatactgtgggcaGcctgtgccaggcgggatcca	14	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241726813	T	T	241726813	1	4	172	0	1	0	0	0	0	0	0	0	8353	986	34	3		3	KIF1A	2	241726813	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5020282	241726813	1472560	225	140651											
GAL3ST2	64090	broad.mit.edu	37	chr2	242716406	242716406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcttgcagaggtaaggGgggcagttggaccccccagg	19	10	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242716406	T	T	242716406	1	4	172	0	1	0	0	0	0	0	0	0	6260	1247	43	2		2	GAL3ST2	2	242716406	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	989593	242716406	482967	226	140652											
CHL1	10752	broad.mit.edu	37	chr3	447415	447415	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaacatatgtaagcaacGctactggttcaccccaacct	5	14	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	447415	T	T	447415	1	4	172	0	1	0	0	0	0	0	0	0	3380	1102	38	3		3	CHL1	3	447415	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08		447415	197575015	227	140653											
SLC6A1	6529	broad.mit.edu	37	chr3	11078613	11078613	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaatggtcctgagcagccCcaggcgggcagctccaccag	14	14	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11078613	A	A	11078613	2	1	172	1	0	0	0	0	0	0	0	1	14787	610	22	2		2	SLC6A1	3	11078613	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	10631198	11078613	186943817	228	140654											
ZCWPW2	152098	broad.mit.edu	37	chr3	28489194	28489194	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatatctagcttccacgaAcgttgtctagaggcactcag	9	10	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28489194	G	G	28489194	1	3	172	0	1	0	0	0	0	0	0	0	17724	58	2	5		5	ZCWPW2	3	28489194	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	17410581	28489194	169533236	229	140655											
OSBPL10	114884	broad.mit.edu	37	chr3	31724991	31724991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaacctgacccttttaCcacccacactctaattccaa	1	16	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31724991	A	A	31724991	1	1	172	0	1	0	0	0	0	0	0	0	11369	522	18	3		3	OSBPL10	3	31724991	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3235797	31724991	166297439	230	140656											
TTC21A	199223	broad.mit.edu	37	chr3	39171651	39171651	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcattctggaggtaagtgaGaggcctcacagccttgccaa	12	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39171651	C	C	39171651	1	2	172	0	1	0	0	0	0	0	0	0	16813	957	33	4		4	TTC21A	3	39171651	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7446660	39171651	158850779	231	140657											
ABHD5	51099	broad.mit.edu	37	chr3	43743798	43743798	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcataatatttcaaataaGactccacttgtccttctcca	2	12	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43743798	A	A	43743798	2	1	172	1	0	0	0	0	0	0	0	1	85	933	33	4		4	ABHD5	3	43743798	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	4572147	43743798	154278632	232	140658											
ZDHHC3	51304	broad.mit.edu	37	chr3	44968472	44968472	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagctatctacctaatataTctttctcataaaaagtgtta	3	7	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44968472	A	A	44968472	1	1	172	0	1	0	0	0	0	0	0	0	17742	1450	50	5		5	ZDHHC3	3	44968472	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	1224674	44968472	153053958	233	140659											
KLHDC8B	200942	broad.mit.edu	37	chr3	49213241	49213241	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggggtctgaaggcttGgtgggagctgtccactggag	19	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49213241	T	T	49213241	1	4	172	0	1	0	0	0	0	0	0	0	8434	1363	47	2		2	KLHDC8B	3	49213241	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	4244769	49213241	148809189	234	140660											
SEMA3F	6405	broad.mit.edu	37	chr3	50197202	50197211	+	Intron	DEL	CCTCTCTTTA	-	-													tgttcttccccagaaatcatCctctctttacaatagcgctc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50197211	-	-	50197202	6	5	172	0	1	1	0	1	0	0	0	0	14142	870	30	0		0	SEMA3F	3	50197202	Intron	DEL	CCTCTCTTTA	TCGA-50-6594-01A-11D-1753-08	983961	50197202	147825228	235	140661											
CACNA2D2	9254	broad.mit.edu	37	chr3	50418419	50418419	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacaggggacaggggctggTacctacccgggtagtagcga	17	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50418419	G	G	50418419	1	3	172	0	1	0	0	0	0	0	0	0	2575	1653	57	5		5	CACNA2D2	3	50418419	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	221217	50418419	147604011	236	140662											
POC1A	25886	broad.mit.edu	37	chr3	52183986	52183986	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgccagaccatgaggcatgAgtccatggagccactggctg	14	11	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52183986	C	C	52183986	3	2	172	1	0	0	0	0	1	0	0	0	12270	304	11	5	1138	5	POC1A	3	52183986	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1765567	52183986	145838444	237	140663											
PBRM1	55193	broad.mit.edu	37	chr3	52621347	52621347	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagggaatgagtgagacttTgggatttaatgagtttctta	12	3	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52621347	C	C	52621347	1	2	172	0	1	0	0	0	0	0	0	0	11585	1827	63	5		5	PBRM1	3	52621347	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	437361	52621347	145401083	238	140664											
FRMD4B	23150	broad.mit.edu	37	chr3	69521296	69521296	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctttttcaggttcattaCcagaatttctagagtaactt	5	7	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69521296	G	G	69521296	1	3	172	0	1	0	0	0	0	0	0	0	6112	522	18	4		4	FRMD4B	3	69521296	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	16899949	69521296	128501134	239	140665											
OR5H14	403273	broad.mit.edu	37	chr3	97868309	97868309	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accacagtggaaaataccccTgttcctggcattcttggtaa	8	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97868309	A	A	97868309	3	1	172	1	0	0	0	0	1	0	0	0	11254	1580	55	5	82	5	OR5H14	3	97868309	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	28347013	97868309	100154121	240	140666											
GPR128	84873	broad.mit.edu	37	chr3	100356236	100356236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctactgctaatgatgatGcccttacaacgtaagcacaa	7	11	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100356236	T	T	100356236	3	4	172	1	0	0	0	0	1	0	0	0	6706	1319	46	3	710	3	GPR128	3	100356236	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2487927	100356236	97666194	241	140667											
MYH15	22989	broad.mit.edu	37	chr3	108214565	108214565	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatacctatgtgcttacatAtaagttttaccattgcttac	4	9	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108214565	T	T	108214565	1	4	172	0	1	0	0	0	0	0	0	0	10128	464	16	5		5	MYH15	3	108214565	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	7858329	108214565	89807865	242	140668											
MORC1	27136	broad.mit.edu	37	chr3	108833273	108833273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgctccaaaaaggaaaCtgtgagtggtgctgatgaag	13	7	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108833273	A	A	108833273	3	1	172	1	0	0	0	0	1	0	0	0	9795	565	20	3	2985	3	MORC1	3	108833273	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	618708	108833273	89189157	243	140669											
IGSF11	152404	broad.mit.edu	37	chr3	118623377	118623377	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagaaaataccatttagccActttaatagtctcggccatc	5	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118623377	T	T	118623377	1	4	172	0	1	0	0	0	0	0	0	0	7668	174	6	5		5	IGSF11	3	118623377	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	9790104	118623377	79399053	244	140670											
IGSF11	152404	broad.mit.edu	37	chr3	118645047	118645047	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagctacagagcaggatgaCatcgctgccaatatcctggg	12	10	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118645047	T	T	118645047	3	4	172	1	0	0	0	0	1	0	0	0	7668	478	17	4	830	4	IGSF11	3	118645047	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	21670	118645047	79377383	245	140671											
CD86	942	broad.mit.edu	37	chr3	121822291	121822291	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtatctgggtattgtataaAgagaaatggaggttttttcc	11	3	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121822291	T	T	121822291	1	4	172	0	1	0	0	0	0	0	0	0	3073	87	3	5		5	CD86	3	121822291	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3177244	121822291	76200139	246	140672											
HEG1	57493	broad.mit.edu	37	chr3	124732515	124732515	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatattaatggtgggtgtGtaggacggaaggttggatgt	18	2	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124732515	A	A	124732515	2	1	172	1	0	0	0	0	0	0	0	1	7111	1372	48	4		4	HEG1	3	124732515	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2910224	124732515	73289915	247	140673											
PLXNA1	5361	broad.mit.edu	37	chr3	126741729	126741729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggaaaacggagagagGtggggattagtgggaggtgc	23	2	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126741729	T	T	126741729	1	4	172	0	1	0	0	0	0	0	0	0	12214	1276	44	3		3	PLXNA1	3	126741729	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2009214	126741729	71280701	248	140674											
PLXND1	23129	broad.mit.edu	37	chr3	129275994	129275994	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatgtcctggatctgctTgtagtagcgctgcacgatct	11	11	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129275994	A	A	129275994	4	1	172	1	0	0	0	0	0	1	0	0	12222	1821	63	5	271	5	PLXND1	3	129275994	Nonsense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	2534265	129275994	68746436	249	140675											
NEK11	79858	broad.mit.edu	37	chr3	130852932	130852932	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatttctgtgaccagagtaAaagaaggtcttttgcattta	8	5	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130852932	G	G	130852932	1	3	172	0	1	0	0	0	0	0	0	0	10418	29	1	5		5	NEK11	3	130852932	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1576938	130852932	67169498	250	140676											
CPNE4	131034	broad.mit.edu	37	chr3	131283074	131283074	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttacctgtcatagtcttgGcaaatctcccccacagctac	5	15	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131283074	T	T	131283074	4	4	172	1	0	0	0	0	0	1	0	0	3846	1195	42	3	650	3	CPNE4	3	131283074	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	430142	131283074	66739356	251	140677											
ACAD11	84129	broad.mit.edu	37	chr3	132294812	132294812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggaatgtgaaaatggcCtagcccattccttttgttat	11	7	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132294812	A	A	132294812	1	1	172	0	1	0	0	0	0	0	0	0	109	696	24	2		2	ACAD11	3	132294812	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1011738	132294812	65727618	252	140678											
CDV3	55573	broad.mit.edu	37	chr3	133293931	133293931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagaggttgattacagcGgcctcagggttcaggcaatg	13	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133293931	A	A	133293931	3	1	172	1	0	0	0	0	1	0	0	0	3211	1116	39	4	295	4	CDV3	3	133293931	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	999119	133293931	64728499	253	140679											
TOPBP1	11073	broad.mit.edu	37	chr3	133371470	133371470	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgacatctgaaagagtaCgacctacatattttgaaaac	7	8	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133371470	G	G	133371470	3	3	172	1	0	0	0	0	1	0	0	0	16493	536	19	4	3726	4	TOPBP1	3	133371470	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	77539	133371470	64650960	254	140680											
FOXL2	668	broad.mit.edu	37	chr3	138665316	138665316	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgggaacttcgcgatgatGtactggtagatgccggacag	14	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138665316	A	A	138665316	2	1	172	1	0	0	0	0	0	0	0	1	6077	1372	48	4		4	FOXL2	3	138665316	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	5293846	138665316	59357114	255	140681											
PCOLCE2	26577	broad.mit.edu	37	chr3	142545905	142545905	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgactcttacttttttttgGcataaagacaaactttattg	5	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142545905	T	T	142545905	1	4	172	0	1	0	0	0	0	0	0	0	11689	1218	42	3		3	PCOLCE2	3	142545905	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3880589	142545905	55476525	256	140682											
MED12L	116931	broad.mit.edu	37	chr3	150883129	150883129	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actataggatactttactcaCgtggaaaaacctgacatgat	7	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150883129	T	T	150883129	1	4	172	0	1	0	0	0	0	0	0	0	9522	551	19	4		4	MED12L	3	150883129	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	8337224	150883129	47139301	257	140683											
IGSF10	285313	broad.mit.edu	37	chr3	151166649	151166649	+	Missense_Mutation	SNP	C	A	A													caaagccaaaatttgccacaCtggctgaatgtgaccgtaat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151166649	A	A	151166649	3	1	172	1	0	0	0	0	1	0	0	0	7667	565	20	3	6811	3	IGSF10	3	151166649	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	283520	151166649	46855781	258	140684	603	2									
IGSF10	285313	broad.mit.edu	37	chr3	151166651	151166651	+	Missense_Mutation	SNP	G	T	T													aagccaaaatttgccacactGgctgaatgtgaccgtaatct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151166651	T	T	151166651	3	4	172	1	0	0	0	0	1	0	0	0	7667	1348	47	2	6813	2	IGSF10	3	151166651	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2	151166651	46855779	259	140685	603	2									
GFM1	85476	broad.mit.edu	37	chr3	158409161	158409161	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caatggagtatagcaggtatCagccatgtttaccatccaca	8	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158409161	T	T	158409161	4	4	172	1	0	0	0	0	0	1	0	0	6405	827	29	4	2231	4	GFM1	3	158409161	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	7242510	158409161	39613269	260	140686											
SI	6476	broad.mit.edu	37	chr3	164716197	164716197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccactgtctttttctgatGctatatgacataaagtacga	7	9	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164716197	T	T	164716197	1	4	172	0	1	0	0	0	0	0	0	0	14410	1334	46	3		3	SI	3	164716197	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6307036	164716197	33306233	261	140687											
SI	6476	broad.mit.edu	37	chr3	164735641	164735641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtacggtaagttagagcagGagttggctggaatgtaacat	14	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164735641	T	T	164735641	3	4	172	1	0	0	0	0	1	0	0	0	14410	1174	41	3	2018	3	SI	3	164735641	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	19444	164735641	33286789	262	140688											
SI	6476	broad.mit.edu	37	chr3	164776800	164776800	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcatttatccacacatgtTgtgtgtttcccctctcatag	5	12	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164776800	A	A	164776800	3	1	172	1	0	0	0	0	1	0	0	0	14410	1812	63	5	4282	5	SI	3	164776800	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	41159	164776800	33245630	263	140689											
SI	6476	broad.mit.edu	37	chr3	164777184	164777184	+	Intron	DEL	C	-	-													aacgtgtattataaacataaCccttaaaaaataaatgaacg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164777184	-	-	164777184	6	5	172	0	1	1	0	1	0	0	0	0	14410	522	18	0		0	SI	3	164777184	Intron	DEL	C	TCGA-50-6594-01A-11D-1753-08	384	164777184	33245246	264	140690											
SLC7A14	57709	broad.mit.edu	37	chr3	170214370	170214370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaacgtcaaactggccCtggacatggagatcgccacc	11	12	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170214370	A	A	170214370	1	1	172	0	1	0	0	0	0	0	0	0	14810	696	24	2		2	SLC7A14	3	170214370	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	5437186	170214370	27808060	265	140691											
CCDC39	339829	broad.mit.edu	37	chr3	180381658	180381658	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttcagttactgtacctgTgtaattgagagctcttgctt	8	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180381658	A	A	180381658	2	1	172	1	0	0	0	0	0	0	0	1	2838	1683	59	5		5	CCDC39	3	180381658	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	10167288	180381658	17640772	266	140692											
HTR3E	285242	broad.mit.edu	37	chr3	183824008	183824008	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgtggccaccacccagCccccacccctgcctcggtgg	10	21	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183824008	G	G	183824008	3	3	172	1	0	0	0	0	1	0	0	0	7518	739	26	4	1089	4	HTR3E	3	183824008	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3442350	183824008	14198422	267	140693											
AP2M1	1173	broad.mit.edu	37	chr3	183894823	183894823	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tataatcacaagggggaggtGctcatctcccgagtctaccg	11	11	4	0	rs2231214	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183894823	C	C	183894823	2	2	172	1	0	0	0	0	0	0	0	1	744	1306	46	4		4	AP2M1	3	183894823	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	70815	183894823	14127607	268	140694											
ALG3	10195	broad.mit.edu	37	chr3	183967125	183967125	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcgcccctcctgcctgcCcttcgagccttccggatgct	9	19	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183967125	T	T	183967125	1	4	172	0	1	0	0	0	0	0	0	0	520	638	22	4		4	ALG3	3	183967125	5'Flank	SNP	C	TCGA-50-6594-01A-11D-1753-08	72302	183967125	14055305	269	140695											
RTP1	132112	broad.mit.edu	37	chr3	186915369	186915369	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaccctcactctccgtgttCtcactaaggtggaaattgcc	7	14	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186915369	A	A	186915369	3	1	172	1	0	0	0	0	1	0	0	0	13844	912	32	3	68	3	RTP1	3	186915369	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2948244	186915369	11107061	270	140696											
MASP1	5648	broad.mit.edu	37	chr3	186953834	186953834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgacaaggtccgtgtgcCactgctgatgatctcatcca	9	12	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186953834	A	A	186953834	1	1	172	0	1	0	0	0	0	0	0	0	9414	594	21	2		2	MASP1	3	186953834	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	38465	186953834	11068596	271	140697											
LPP	4026	broad.mit.edu	37	chr3	188590546	188590546	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatgttcactgctaccgaTgcgaggtctggttgacagcc	11	12	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188590546	A	A	188590546	3	1	172	1	0	0	0	0	1	0	0	0	9010	1464	51	5	1735	5	LPP	3	188590546	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	1636712	188590546	9431884	272	140698											
LSG1	55341	broad.mit.edu	37	chr3	194373629	194373629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagagctttccttccagtcCtggctgcagtcctcttcctt	8	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194373629	A	A	194373629	3	1	172	1	0	0	0	0	1	0	0	0	9136	680	24	2	1002	2	LSG1	3	194373629	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	5783083	194373629	3648801	273	140699											
SENP5	205564	broad.mit.edu	37	chr3	196650449	196650449	+	Intron	DEL	C	-	-													taatatactgcctattttttCatttattttgtaattggcca							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	196650449	-	-	196650449	6	5	172	0	1	1	0	1	0	0	0	0	14162	841	29	0		0	SENP5	3	196650449	Intron	DEL	C	TCGA-50-6594-01A-11D-1753-08	2276820	196650449	1371981	274	140700											
GAK	2580	broad.mit.edu	37	chr4	871403	871403	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgcagctgcactcacCgcatcttgtcgtactcctgg	12	14	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	871403	G	G	871403	3	3	172	1	0	0	0	0	1	0	0	0	6257	666	23	4	2131	4	GAK	4	871403	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08		871403	190282873	275	140701											
MAEA	10296	broad.mit.edu	37	chr4	1309087	1309087	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccgtaatccctgcttttcTccttgtgagtgttgtggatt	9	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1309087	C	C	1309087	1	2	172	0	1	0	0	0	0	0	0	0	9241	1566	54	5		5	MAEA	4	1309087	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	437684	1309087	189845189	276	140702			1	110		3	3	75	N	T_G_C	3.785717e-06
MAEA	10296	broad.mit.edu	37	chr4	1309148	1309148	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgcagggctgcggggcatCcctgtcctgaacgtgcctct	15	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1309148	T	T	1309148	1	4	172	0	1	0	0	0	0	0	0	0	9241	870	30	4		4	MAEA	4	1309148	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	61	1309148	189845128	277	140703			1	110		3	3	75	N	T_G_C	3.785717e-06
MAEA	10296	broad.mit.edu	37	chr4	1309161	1309161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcatccctgtcctgaacGtgcctctgttgtgtgtggct	14	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1309161	T	T	1309161	1	4	172	0	1	0	0	0	0	0	0	0	9241	1160	40	3		3	MAEA	4	1309161	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	13	1309161	189845115	278	140704			1	110		3	3	75	N	T_G_C	3.785717e-06
CRIPAK	285464	broad.mit.edu	37	chr4	1388837	1388867	+	Frame_Shift_Del	DEL	TCACACGTGCCAACGTGGAGTGCCCGCCTGA	-	-													catgtggagtgcccgcctgcTcacacgtgccaacgtggagt					rs74511366	byFrequency;by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1388867	-	-	1388837	7	5	172	1	0	1	0	1	0	0	0	0	3909	1551	54	0	540	0	CRIPAK	4	1388837	Frame_Shift_Del	DEL	TCACACGTGCCAACGTGGAGTGCCCGCCTGA	TCGA-50-6594-01A-11D-1753-08	79676	1388837	189765439	279	140705											
JAKMIP1	152789	broad.mit.edu	37	chr4	6083359	6083359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacgttttcccgcgtgaGgttcttgattttctcctcca	7	13	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6083359	T	T	6083359	3	4	172	1	0	0	0	0	1	0	0	0	8010	1000	35	2	1556	2	JAKMIP1	4	6083359	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	4694522	6083359	185070917	280	140706											
ABLIM2	84448	broad.mit.edu	37	chr4	8029633	8029633	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaacctgggctggctggtgCaacgccacacatattcctca	9	14	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8029633	G	G	8029633	1	3	172	0	1	0	0	0	0	0	0	0	95	725	25	4		4	ABLIM2	4	8029633	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1946274	8029633	183124643	281	140707											
GPR78	27201	broad.mit.edu	37	chr4	8589099	8589099	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacacactgagggcctggCagggctcatcgcccccacct	11	17	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8589099	A	A	8589099	1	1	172	0	1	0	0	0	0	0	0	0	6775	725	25	3		3	GPR78	4	8589099	3'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	559466	8589099	182565177	282	140708											
SLIT2	9353	broad.mit.edu	37	chr4	20255565	20255565	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagcacagtggactgtcacGggctggcgctgcgcagcgtg	17	12	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20255565	C	C	20255565	3	2	172	1	0	0	0	0	1	0	0	0	14854	1116	39	4	129	4	SLIT2	4	20255565	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	11666466	20255565	170898711	283	140709											
SLIT2	9353	broad.mit.edu	37	chr4	20619132	20619132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcttggagggccatggaGgtgtcctctgtgatgaagag	17	6	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20619132	T	T	20619132	3	4	172	1	0	0	0	0	1	0	0	0	14854	1000	35	2	4349	2	SLIT2	4	20619132	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	363567	20619132	170535144	284	140710											
PPARGC1A	10891	broad.mit.edu	37	chr4	23814313	23814313	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatctatcaccaaaaaaagCacacagaaaaagaagaaacc	4	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23814313	G	G	23814313	1	3	172	0	1	0	0	0	0	0	0	0	12396	725	25	4		4	PPARGC1A	4	23814313	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3195181	23814313	167339963	285	140711											
PCDH7	5099	broad.mit.edu	37	chr4	30723485	30723485	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccttcccgtcgcccgtGctcacgctcacggtggagga	11	18	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30723485	T	T	30723485	2	4	172	1	0	0	0	0	0	0	0	1	11610	1306	46	3		3	PCDH7	4	30723485	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	6909172	30723485	160430791	286	140712											
PDS5A	23244	broad.mit.edu	37	chr4	39876088	39876088	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccataaaccaacaagtatTcctttggttgacttccactt	4	12	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39876088	G	G	39876088	1	3	172	0	1	0	0	0	0	0	0	0	11785	1798	62	5		5	PDS5A	4	39876088	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	9152603	39876088	151278188	287	140713											
DCAF4L1	285429	broad.mit.edu	37	chr4	41984938	41984938	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggctcgggggcatccggGgagcagcaccagggctgctc	17	14	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41984938	T	T	41984938	4	4	172	1	0	0	0	0	0	1	0	0	4304	1233	43	2	1131	2	DCAF4L1	4	41984938	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2108850	41984938	149169338	288	140714											
SLC30A9	10463	broad.mit.edu	37	chr4	42037187	42037187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaatatttttgctgttaGctagtagcgcatatttaaca	6	6	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42037187	T	T	42037187	1	4	172	0	1	0	0	0	0	0	0	0	14676	986	34	3		3	SLC30A9	4	42037187	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	52249	42037187	149117089	289	140715											
KCTD8	386617	broad.mit.edu	37	chr4	44176822	44176822	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattactataacccatacttCtgcaacagttcagattgcca	4	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44176822	A	A	44176822	3	1	172	1	0	0	0	0	1	0	0	0	8185	912	32	3	18	3	KCTD8	4	44176822	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2139635	44176822	146977454	290	140716											
GABRG1	2565	broad.mit.edu	37	chr4	46060349	46060349	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaatatcccattcttctGctcaggtcaaaaaaaattgt	6	8	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46060349	A	A	46060349	2	1	172	1	0	0	0	0	0	0	0	1	6231	1310	46	4		4	GABRG1	4	46060349	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1883527	46060349	145093927	291	140717											
GABRA2	2555	broad.mit.edu	37	chr4	46252686	46252686	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacttaacattttctaaagtCcacttcaaattctgaaggaa	4	8	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46252686	A	A	46252686	1	1	172	0	1	0	0	0	0	0	0	0	6221	870	30	3		3	GABRA2	4	46252686	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	192337	46252686	144901590	292	140718											
GABRA2	2555	broad.mit.edu	37	chr4	46312365	46312365	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagactcgatagaggtagaGcattaatcacagcagtaggc	11	8	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46312365	C	C	46312365	1	2	172	0	1	0	0	0	0	0	0	0	6221	986	34	4		4	GABRA2	4	46312365	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	59679	46312365	144841911	293	140719											
ATP10D	57205	broad.mit.edu	37	chr4	47571099	47571099	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctgccgagccacaccGctgcagaaaagtgaagtggt	13	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47571099	C	C	47571099	2	2	172	1	0	0	0	0	0	0	0	1	1122	1074	38	4		4	ATP10D	4	47571099	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1258734	47571099	143583177	294	140720											
ATP10D	57205	broad.mit.edu	37	chr4	47574793	47574793	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcggtcagaagaaggtAgaatatgaggcctagggttt	14	4	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47574793	G	G	47574793	1	3	172	0	1	0	0	0	0	0	0	0	1122	435	15	5		5	ATP10D	4	47574793	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3694	47574793	143579483	295	140721											
CNGA1	1259	broad.mit.edu	37	chr4	47945102	47945102	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacacagggctctttactAtaaagtttctttctactttg	5	8	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47945102	G	G	47945102	1	3	172	0	1	0	0	0	0	0	0	0	3628	464	16	5		5	CNGA1	4	47945102	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	370309	47945102	143209174	296	140722											
SLAIN2	57606	broad.mit.edu	37	chr4	48412965	48412965	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagccctatagcagaaacAgtgatggctcctcctcttcc	9	13	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48412965	T	T	48412965	1	4	172	0	1	0	0	0	0	0	0	0	14479	203	7	5		5	SLAIN2	4	48412965	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	467863	48412965	142741311	297	140723											
FRYL	285527	broad.mit.edu	37	chr4	48572899	48572899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatattcgtaccagttgtaCtcgtaaaatgtctcgacgcc	7	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48572899	A	A	48572899	3	1	172	1	0	0	0	0	1	0	0	0	6124	565	20	3	6252	3	FRYL	4	48572899	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	159934	48572899	142581377	298	140724											
KDR	3791	broad.mit.edu	37	chr4	55963855	55963855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattttgactgctactgtcCtgcaagttgctgtcttgtca	8	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55963855	A	A	55963855	3	1	172	1	0	0	0	0	1	0	0	0	8209	681	24	2	1534	2	KDR	4	55963855	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	7390956	55963855	135190421	299	140725											
KDR	3791	broad.mit.edu	37	chr4	55971027	55971027	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcccacatggattggcagAggctgtgggccaagcttgta	13	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55971027	T	T	55971027	2	4	172	1	0	0	0	0	0	0	0	1	8209	291	11	5		5	KDR	4	55971027	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	7172	55971027	135183249	300	140726											
LPHN3	23284	broad.mit.edu	37	chr4	62445259	62445259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttttttaggcaatcctcaGgtagacgatttcatttgaag	9	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62445259	T	T	62445259	1	4	172	0	1	0	0	0	0	0	0	0	9004	1015	35	2		2	LPHN3	4	62445259	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6474232	62445259	128709017	301	140727											
GNRHR	2798	broad.mit.edu	37	chr4	68610586	68610586	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggtactctgctagccttCtaacatgttacctaaagcaa	6	10	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68610586	T	T	68610586	1	4	172	0	1	0	0	0	0	0	0	0	6613	928	32	4		4	GNRHR	4	68610586	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6165327	68610586	122543690	302	140728											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68795710	68795710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccctttgttcagtagagggGaactggaacaccataatgac	11	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68795710	T	T	68795710	3	4	172	1	0	0	0	0	1	0	0	0	16362	1165	41	3	911	3	TMPRSS11A	4	68795710	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	185124	68795710	122358566	303	140729											
UGT2A3	79799	broad.mit.edu	37	chr4	69811094	69811094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaggttggtatggttgaGgaaattcaaaatcccaatat	10	4	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69811094	T	T	69811094	3	4	172	1	0	0	0	0	1	0	0	0	17081	1000	35	2	809	2	UGT2A3	4	69811094	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1015384	69811094	121343182	304	140730											
UGT2B11	10720	broad.mit.edu	37	chr4	70070452	70070452	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgaaagtgacagtgttttCtagataacacattgaactaa	7	6	2	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70070452	G	G	70070452	1	3	172	0	1	0	0	0	0	0	0	0	17083	928	32	4		4	UGT2B11	4	70070452	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	259358	70070452	121083824	305	140731											
UGT2B11	10720	broad.mit.edu	37	chr4	70078208	70078208	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctttctttcagtgtaagtCaaacattttgaatgaaaact	5	6	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70078208	T	T	70078208	1	4	172	0	1	0	0	0	0	0	0	0	17083	841	29	4		4	UGT2B11	4	70078208	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	7756	70078208	121076068	306	140732											
UGT2B28	54490	broad.mit.edu	37	chr4	70152426	70152426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaattctttagtagtgcctGctgtggtgatactcttttgt	9	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70152426	T	T	70152426	1	4	172	0	1	0	0	0	0	0	0	0	17086	1334	46	3		3	UGT2B28	4	70152426	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	74218	70152426	121001850	307	140733											
PROL1	58503	broad.mit.edu	37	chr4	71275675	71275676	+	Missense_Mutation	DNP	CC	AA	AA													actactcaaattctcgccaaCcgtcctcacacagtattgct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	71275676	AA	AA	71275675	3	1	172	1	0	0	0	0	1	0	0	0	12660	506	18	3	636	3	PROL1	4	71275675	Missense_Mutation	DNP	CC	TCGA-50-6594-01A-11D-1753-08	1123249	71275675	119878601	308	140734											
SLC4A4	8671	broad.mit.edu	37	chr4	72332028	72332028	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatatgggtaaaagacttTgttcttcattcttgatatgt	8	5	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72332028	C	C	72332028	1	2	172	0	1	0	0	0	0	0	0	0	14770	1827	63	5		5	SLC4A4	4	72332028	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	1056353	72332028	118822248	309	140735											
RASSF6	166824	broad.mit.edu	37	chr4	74459028	74459028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgtgagccaccgtgccCggccattgctgggaaattaa	13	11	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74459028	A	A	74459028	1	1	172	0	1	0	0	0	0	0	0	0	13198	667	23	1		1	RASSF6	4	74459028	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2127000	74459028	116695248	310	140736											
RASSF6	166824	broad.mit.edu	37	chr4	74477409	74477409	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtatattccacaaatgactGgtgagtaggacaatgtataa	10	5	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74477409	A	A	74477409	1	1	172	0	1	0	0	0	0	0	0	0	13198	1363	47	4		4	RASSF6	4	74477409	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	18381	74477409	116676867	311	140737											
SDAD1	55153	broad.mit.edu	37	chr4	76882214	76882214	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcatctgaggattcagTgttcggaagaggtgaatcaa	13	6	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76882214	C	C	76882214	2	2	172	1	0	0	0	0	0	0	0	1	14063	1683	59	5		5	SDAD1	4	76882214	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	2404805	76882214	114272062	312	140738											
FRAS1	80144	broad.mit.edu	37	chr4	79367867	79367867	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgagatctaatagttTatgctttaatcagaggaaga	10	4	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79367867	A	A	79367867	1	1	172	0	1	0	0	0	0	0	0	0	6102	1769	61	5		5	FRAS1	4	79367867	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	2485653	79367867	111786409	313	140739											
PRKG2	5593	broad.mit.edu	37	chr4	82125934	82125934	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgaagcgggcttcctcCctgcatatgcaccacatcct	9	16	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82125934	A	A	82125934	4	1	172	1	0	0	0	0	0	1	0	0	12629	632	22	2	2092	2	PRKG2	4	82125934	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2758067	82125934	109028342	314	140740											
FAM175A	84142	broad.mit.edu	37	chr4	84383867	84383867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttcaggaatgtcagtgtGttctaccattaaggtcagat	10	7	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84383867	T	T	84383867	3	4	172	1	0	0	0	0	1	0	0	0	5542	1377	48	3	248	3	FAM175A	4	84383867	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2257933	84383867	106770409	315	140741											
MAPK10	5602	broad.mit.edu	37	chr4	87019676	87019676	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcaaaaggtacaaggataCagtcccttcctggaaagagg	11	8	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87019676	T	T	87019676	5	4	172	1	0	0	0	0	0	0	1	0	9364	492	17	4	620	4	MAPK10	4	87019676	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	2635809	87019676	104134600	316	140742											
HSD17B13	345275	broad.mit.edu	37	chr4	88231548	88231548	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaatattatttttattttCtaaaattttaattttataag	2	1	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88231548	T	T	88231548	1	4	172	0	1	0	0	0	0	0	0	0	7449	928	32	4		4	HSD17B13	4	88231548	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1211872	88231548	102922728	317	140743											
DMP1	1758	broad.mit.edu	37	chr4	88583076	88583076	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactccttctctatcggttcCtggaatactgaccatatctg	6	12	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88583076	A	A	88583076	1	1	172	0	1	0	0	0	0	0	0	0	4623	696	24	2		2	DMP1	4	88583076	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	351528	88583076	102571200	318	140744											
DMP1	1758	broad.mit.edu	37	chr4	88584032	88584032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtccaggggagataacCccgaccccacaactagttat	10	12	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88584032	A	A	88584032	3	1	172	1	0	0	0	0	1	0	0	0	4623	623	22	2	1120	2	DMP1	4	88584032	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	956	88584032	102570244	319	140745											
MEPE	56955	broad.mit.edu	37	chr4	88766962	88766962	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagagaagaaaatggtggAaataccattggaactaggga	14	3	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88766962	T	T	88766962	2	4	172	1	0	0	0	0	0	0	0	1	9571	233	9	5		5	MEPE	4	88766962	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	182930	88766962	102387314	320	140746											
HERC5	51191	broad.mit.edu	37	chr4	89415467	89415467	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagacttgaaagaactcaGtcctgatttgggaaagtaag	12	5	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89415467	C	C	89415467	3	2	172	1	0	0	0	0	1	0	0	0	7128	1029	36	4	2499	4	HERC5	4	89415467	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	648505	89415467	101738809	321	140747											
GPRIN3	285513	broad.mit.edu	37	chr4	90168977	90168977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacggacgcagcagttggggCgtcggaagttctgcagcatg	17	9	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90168977	A	A	90168977	3	1	172	1	0	0	0	0	1	0	0	0	6797	768	27	3	49	3	GPRIN3	4	90168977	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	753510	90168977	100985299	322	140748											
GRID2	2895	broad.mit.edu	37	chr4	94376753	94376753	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgaggcaagctgaagtGgcacaaatgaaattgttttt	10	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94376753	A	A	94376753	1	1	172	0	1	0	0	0	0	0	0	0	6838	1363	47	4		4	GRID2	4	94376753	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4207776	94376753	96777523	323	140749											
UNC5C	8633	broad.mit.edu	37	chr4	96137361	96137361	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgggaatcagcaagctgacTcctgaatagcaaaagagaaa	11	8	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96137361	A	A	96137361	2	1	172	1	0	0	0	0	0	0	0	1	17119	1565	54	5		5	UNC5C	4	96137361	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	1760608	96137361	95016915	324	140750											
ADH6	130	broad.mit.edu	37	chr4	100130052	100130052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaagccgactcctcccaGgccaaacacagcacaggtag	9	15	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100130052	T	T	100130052	3	4	172	1	0	0	0	0	1	0	0	0	312	991	35	2	546	2	ADH6	4	100130052	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3992691	100130052	91024224	325	140751											
ADH1A	124	broad.mit.edu	37	chr4	100197673	100197673	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccccaaatgtaatttattGataaaatctgtgatgagcag	8	7	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100197673	T	T	100197673	1	4	172	0	1	0	0	0	0	0	0	0	307	1305	45	3		3	ADH1A	4	100197673	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	67621	100197673	90956603	326	140752											
SLC39A8	64116	broad.mit.edu	37	chr4	103189243	103189243	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttttttccatcctagcaGaaaatcaattaaaatgataa	3	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103189243	A	A	103189243	1	1	172	0	1	0	0	0	0	0	0	0	14738	957	33	4		4	SLC39A8	4	103189243	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2991570	103189243	87965033	327	140753											
ARHGEF38	54848	broad.mit.edu	37	chr4	106534698	106534698	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctcgagttctacaatacAacaggaaataattttttaat	4	7	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106534698	G	G	106534698	1	3	172	0	1	0	0	0	0	0	0	0	909	145	5	5		5	ARHGEF38	4	106534698	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3345455	106534698	84619578	328	140754											
TBCK	93627	broad.mit.edu	37	chr4	107115860	107115860	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaatatcaaaaaaaccgggGgaagtcatacttacgagtaa	8	7	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107115860	A	A	107115860	1	1	172	0	1	0	0	0	0	0	0	0	15758	1247	43	4		4	TBCK	4	107115860	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	581162	107115860	84038416	329	140755											
COL25A1	84570	broad.mit.edu	37	chr4	109862705	109862705	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccacattagacttataatgAttattaaacaaaatagaact	3	6	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109862705	G	G	109862705	1	3	172	0	1	0	0	0	0	0	0	0	3716	348	12	5		5	COL25A1	4	109862705	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2746845	109862705	81291571	330	140756											
PITX2	5308	broad.mit.edu	37	chr4	111539909	111539909	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gattactaaaacttccatcgGaggccaacccccgccttccc	6	17	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111539909	T	T	111539909	1	4	172	0	1	0	0	0	0	0	0	0	12050	1189	41	3		3	PITX2	4	111539909	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1677204	111539909	79614367	331	140757											
ANK2	287	broad.mit.edu	37	chr4	114171085	114171085	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgatgtattatctctattCttttttaaattgaaacatca	3	6	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114171085	A	A	114171085	1	1	172	0	1	0	0	0	0	0	0	0	621	928	32	3		3	ANK2	4	114171085	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2631176	114171085	76983191	332	140758											
SPATA5	166378	broad.mit.edu	37	chr4	124011851	124011851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctactaaccgtccagatagGatagacaaggtaagagagaa	11	7	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124011851	T	T	124011851	3	4	172	1	0	0	0	0	1	0	0	0	15127	1165	41	3	2385	3	SPATA5	4	124011851	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	9840766	124011851	67142425	333	140759											
PLK4	10733	broad.mit.edu	37	chr4	128812264	128812264	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggtgagcatacttgattcAgaggaggtgtgtgtggagct	16	4	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128812264	T	T	128812264	2	4	172	1	0	0	0	0	0	0	0	1	12193	175	7	5		5	PLK4	4	128812264	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	4800413	128812264	62342012	334	140760											
C4orf33	132321	broad.mit.edu	37	chr4	130030700	130030700	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagcttatctcccttggAgttattttccaccaaatgtg	7	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130030700	T	T	130030700	3	4	172	1	0	0	0	0	1	0	0	0	2286	304	11	5	381	5	C4orf33	4	130030700	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1218436	130030700	61123576	335	140761											
RNF150	57484	broad.mit.edu	37	chr4	141868675	141868675	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagaatgttagggttgtcTgcaatagaaacatggaaaca	10	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141868675	A	A	141868675	1	1	172	0	1	0	0	0	0	0	0	0	13562	1595	55	5		5	RNF150	4	141868675	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	11837975	141868675	49285601	336	140762											
USP38	84640	broad.mit.edu	37	chr4	144117059	144117059	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatcaatatttttttcTttgggtggtatccttgaaag	7	4	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144117059	G	G	144117059	1	3	172	0	1	0	0	0	0	0	0	0	17196	1624	56	5		5	USP38	4	144117059	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	2248384	144117059	47037217	337	140763											
SH3D19	152503	broad.mit.edu	37	chr4	152056103	152056103	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccacctcagcctcccaaaGtactgggatacaggtctgag	9	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152056103	T	T	152056103	1	4	172	0	1	0	0	0	0	0	0	0	14362	1044	36	3		3	SH3D19	4	152056103	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7939044	152056103	39098173	338	140764											
DCHS2	54798	broad.mit.edu	37	chr4	155219046	155219046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctttatacaggtggtgGctgaaggaaatctttacatc	10	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155219046	T	T	155219046	3	4	172	1	0	0	0	0	1	0	0	0	4321	1194	42	3	3727	3	DCHS2	4	155219046	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3162943	155219046	35935230	339	140765											
MAP9	79884	broad.mit.edu	37	chr4	156296835	156296835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaatataagatttacccCtgctttatataggactgttc	6	7	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156296835	A	A	156296835	1	1	172	0	1	0	0	0	0	0	0	0	9362	696	24	2		2	MAP9	4	156296835	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1077789	156296835	34857441	340	140766											
TKTL2	84076	broad.mit.edu	37	chr4	164394464	164394465	+	Frame_Shift_Ins	INS	-	T	T													agctggccttgtcaaggtacINSttgccagtataagccattcc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164394465	T	T	164394464	7	5	172	1	0	1	1	0	0	0	0	0	16059	564	20	0	1461	0	TKTL2	4	164394464	Frame_Shift_Ins	INS	-	TCGA-50-6594-01A-11D-1753-08	8097629	164394464	26759812	341	140767											
MARCH1	55016	broad.mit.edu	37	chr4	164450168	164450168	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccaatggctaccacaaccAgttttgtccaaaatggccat	7	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164450168	T	T	164450168	3	4	172	1	0	0	0	0	1	0	0	0	9390	188	7	5	271	5	MARCH1	4	164450168	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	55704	164450168	26704108	342	140768											
DDX60	55601	broad.mit.edu	37	chr4	169182261	169182261	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggtttttttaaaatagtcCtatgaaagtacattataaaa	6	3	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169182261	G	G	169182261	1	3	172	0	1	0	0	0	0	0	0	0	4411	696	24	4		4	DDX60	4	169182261	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4732093	169182261	21972015	343	140769											
GALNT7	51809	broad.mit.edu	37	chr4	174238925	174238925	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaagttgttccgtattgaGggccatcaggtttattgatc	10	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174238925	C	C	174238925	1	2	172	0	1	0	0	0	0	0	0	0	6280	1015	35	4		4	GALNT7	4	174238925	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5056664	174238925	16915351	344	140770											
GLRA3	8001	broad.mit.edu	37	chr4	175604184	175604184	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcacataggatgagaagaCcaaacagtgtcatcttatag	9	7	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175604184	T	T	175604184	1	4	172	0	1	0	0	0	0	0	0	0	6520	522	18	4		4	GLRA3	4	175604184	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1365259	175604184	15550092	345	140771											
GLRA3	8001	broad.mit.edu	37	chr4	175688072	175688072	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgccattaatgtaattacaGattactctagtgtgaaactt	6	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175688072	T	T	175688072	1	4	172	0	1	0	0	0	0	0	0	0	6520	957	33	3		3	GLRA3	4	175688072	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	83888	175688072	15466204	346	140772											
WDR17	116966	broad.mit.edu	37	chr4	177063217	177063217	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgattggagccaaaacaAtaagtaagtggttttttttc	9	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177063217	G	G	177063217	3	3	172	1	0	0	0	0	1	0	0	0	17404	101	4	5	1640	5	WDR17	4	177063217	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1375145	177063217	14091059	347	140773											
AGA	175	broad.mit.edu	37	chr4	178355746	178355746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacttagcctctgatacCgttttaagtaaattcttcat	4	10	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178355746	A	A	178355746	1	1	172	0	1	0	0	0	0	0	0	0	365	667	23	1		1	AGA	4	178355746	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1292529	178355746	12798530	348	140774											
FRG1	2483	broad.mit.edu	37	chr4	190878635	190878635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcaaaaagtaaaacagCaggagaagaagaaatgatca	10	4	1	5			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190878635	A	A	190878635	3	1	172	1	0	0	0	0	1	0	0	0	6106	710	25	3	537	3	FRG1	4	190878635	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	12522889	190878635	275641	349	140775											
ADAMTS16	170690	broad.mit.edu	37	chr5	5306772	5306772	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcgccccgcttccatgCcccaggcaccccccatttgc	8	22	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5306772	A	A	5306772	4	1	172	1	0	0	0	0	0	1	0	0	261	747	26	3	3424	3	ADAMTS16	5	5306772	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08		5306772	175608488	350	140776											
KIAA0947	23379	broad.mit.edu	37	chr5	5454625	5454625	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggccttgtgtacggtgaGccaaatgacgtgactttaat	11	8	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5454625	A	A	5454625	1	1	172	0	1	0	0	0	0	0	0	0	8272	986	34	4		4	KIAA0947	5	5454625	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	147853	5454625	175460635	351	140777											
TAS2R1	50834	broad.mit.edu	37	chr5	9629204	9629204	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggcaggcatgggtaaaTcattgaatcatgggttcttt	13	5	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9629204	G	G	9629204	1	3	172	0	1	0	0	0	0	0	0	0	15684	1450	50	5		5	TAS2R1	5	9629204	3'UTR	SNP	T	TCGA-50-6594-01A-11D-1753-08	4174579	9629204	171286056	352	140778											
TAS2R1	50834	broad.mit.edu	37	chr5	9629953	9629953	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagataacaatcacattaacGtagaagatgaacaactgcag	7	7	1	4	rs139834398		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9629953	C	C	9629953	4	2	172	1	0	0	0	0	0	1	0	0	15684	1140	40	4	711	4	TAS2R1	5	9629953	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	749	9629953	171285307	353	140779											
CTNND2	1501	broad.mit.edu	37	chr5	11199707	11199707	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagctccacaggcactacGgtggacttcggtcatccgat	11	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11199707	C	C	11199707	3	2	172	1	0	0	0	0	1	0	0	0	4054	1116	39	4	1897	4	CTNND2	5	11199707	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1569754	11199707	169715553	354	140780											
MARCH11	441061	broad.mit.edu	37	chr5	16177774	16177774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatccttagtaataactaaGcttaagtgcattcatgttaa	5	6	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16177774	T	T	16177774	1	4	172	0	1	0	0	0	0	0	0	0	9392	986	34	3		3	MARCH11	5	16177774	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4978067	16177774	164737486	355	140781											
RNASEN	29102	broad.mit.edu	37	chr5	31436063	31436063	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagggctggcacacagtaGctgtgcaatggatatcaggt	13	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31436063	A	A	31436063	1	1	172	0	1	0	0	0	0	0	0	0	13528	986	34	4		4	RNASEN	5	31436063	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	15258289	31436063	149479197	356	140782											
PDZD2	23037	broad.mit.edu	37	chr5	31725552	31725552	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttttttaagcatcattgcAacattgtattcctgataatt	5	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31725552	T	T	31725552	1	4	172	0	1	0	0	0	0	0	0	0	11795	145	5	5		5	PDZD2	5	31725552	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	289489	31725552	149189708	357	140783											
CAPSL	133690	broad.mit.edu	37	chr5	35904633	35904633	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtcccagggcctggtcCccaggtcatgtgcttaaagc	13	13	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35904633	A	A	35904633	1	1	172	0	1	0	0	0	0	0	0	0	2665	638	22	2		2	CAPSL	5	35904633	3'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	4179081	35904633	145010627	358	140784											
SLC1A3	6507	broad.mit.edu	37	chr5	36671334	36671334	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgccttcctggacttgatcAggtatgtccttgcaagcccg	10	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36671334	T	T	36671334	3	4	172	1	0	0	0	0	1	0	0	0	14546	202	7	5	550	5	SLC1A3	5	36671334	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	766701	36671334	144243926	359	140785											
C9	735	broad.mit.edu	37	chr5	39311461	39311461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgaatttctcctttcaCatgcagaaacattttttcct	4	10	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39311461	A	A	39311461	3	1	172	1	0	0	0	0	1	0	0	0	2469	478	17	3	810	3	C9	5	39311461	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2640127	39311461	141603799	360	140786											
DAB2	1601	broad.mit.edu	37	chr5	39381532	39381532	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaagcaaaagagtcatacTtaattttatctctaggcacc	5	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39381532	C	C	39381532	1	2	172	0	1	0	0	0	0	0	0	0	4251	1624	56	5		5	DAB2	5	39381532	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	70071	39381532	141533728	361	140787											
DAB2	1601	broad.mit.edu	37	chr5	39381544	39381544	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcatacttaattttatctCtaggcacctacctagaccca	4	12	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39381544	G	G	39381544	1	3	172	0	1	0	0	0	0	0	0	0	4251	928	32	4		4	DAB2	5	39381544	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	12	39381544	141533716	362	140788											
C7	730	broad.mit.edu	37	chr5	40959516	40959516	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttcccaagccctctttaAgaacttattgatcaacctct	4	12	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40959516	T	T	40959516	1	4	172	0	1	0	0	0	0	0	0	0	2400	87	3	5		5	C7	5	40959516	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1577972	40959516	139955744	363	140789											
C6	729	broad.mit.edu	37	chr5	41195923	41195923	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaactgtacactagggatGggattatacttccgtgtgca	10	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41195923	T	T	41195923	2	4	172	1	0	0	0	0	0	0	0	1	2338	1335	47	2		2	C6	5	41195923	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	236407	41195923	139719337	364	140790											
PAIP1	10605	broad.mit.edu	37	chr5	43535036	43535036	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgccccagttacttgaccgGagttctacaagcttcaagag	9	12	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43535036	C	C	43535036	2	2	172	1	0	0	0	0	0	0	0	1	11490	1161	41	4		4	PAIP1	5	43535036	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2339113	43535036	137380224	365	140791											
HCN1	348980	broad.mit.edu	37	chr5	45262167	45262167	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggctcccgacgacatctgTcggaagagggtgacgcgctg	15	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45262167	C	C	45262167	2	2	172	1	0	0	0	0	0	0	0	1	7062	1654	58	5		5	HCN1	5	45262167	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	1727131	45262167	135653093	366	140792											
HCN1	348980	broad.mit.edu	37	chr5	45461867	45461867	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacatttatagagaagaaatCagatcattgtaacataatta	5	4	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45461867	A	A	45461867	1	1	172	0	1	0	0	0	0	0	0	0	7062	841	29	3		3	HCN1	5	45461867	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	199700	45461867	135453393	367	140793											
ITGA2	3673	broad.mit.edu	37	chr5	52376359	52376359	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtaacaacaggaagtgttCcagtaagcatggcaactgta	11	7	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52376359	G	G	52376359	3	3	172	1	0	0	0	0	1	0	0	0	7945	855	30	4	3045	4	ITGA2	5	52376359	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	6914492	52376359	128538901	368	140794											
GZMA	3001	broad.mit.edu	37	chr5	54405931	54405931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaataaatgcggagaccCtcgtgggcctggtgtctata	12	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54405931	A	A	54405931	3	1	172	1	0	0	0	0	1	0	0	0	6980	681	24	2	728	2	GZMA	5	54405931	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2029572	54405931	126509329	369	140795											
CDC20B	166979	broad.mit.edu	37	chr5	54468503	54468503	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaacacagataacatattGagggagaaactatttaggaa	9	4	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54468503	T	T	54468503	1	4	172	0	1	0	0	0	0	0	0	0	3090	1305	45	3		3	CDC20B	5	54468503	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	62572	54468503	126446757	370	140796											
IL31RA	133396	broad.mit.edu	37	chr5	55201965	55201965	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgaggtcatgcaggcctgCgttgctgaggaccagctagt	14	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55201965	A	A	55201965	4	1	172	1	0	0	0	0	0	1	0	0	7761	776	27	3	1135	3	IL31RA	5	55201965	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	733462	55201965	125713295	371	140797											
IL31RA	133396	broad.mit.edu	37	chr5	55206564	55206564	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accttacatcagagagaaatGacatctgccaaaagctggag	9	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55206564	T	T	55206564	1	4	172	0	1	0	0	0	0	0	0	0	7761	1305	45	3		3	IL31RA	5	55206564	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4599	55206564	125708696	372	140798											
ANKRD55	79722	broad.mit.edu	37	chr5	55471986	55471986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagtcagtaccaggtagGtggccaggcataaacttgtg	12	9	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55471986	T	T	55471986	3	4	172	1	0	0	0	0	1	0	0	0	681	1261	44	3	1575	3	ANKRD55	5	55471986	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	265422	55471986	125443274	373	140799											
PIK3R1	5295	broad.mit.edu	37	chr5	67569148	67569148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaattaaattattttgtacGtccttcattgtggtctaatg	7	5	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67569148	T	T	67569148	1	4	172	0	1	0	0	0	0	0	0	0	12013	1160	40	3		3	PIK3R1	5	67569148	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	12097162	67569148	113346112	374	140800											
MAP1B	4131	broad.mit.edu	37	chr5	71493793	71493793	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctactcctgttgatgagggCgtagcagaagacacgtactc	12	10	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71493793	A	A	71493793	2	1	172	1	0	0	0	0	0	0	0	1	9320	755	27	3		3	MAP1B	5	71493793	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	3924645	71493793	109421467	375	140801											
GPR98	84059	broad.mit.edu	37	chr5	89979399	89979399	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attttaatattaagtattttGtaggttataagacatcatgg	7	2	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89979399	C	C	89979399	1	2	172	0	1	0	0	0	0	0	0	0	6787	1392	48	4		4	GPR98	5	89979399	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	18485606	89979399	90935861	376	140802											
GPR150	285601	broad.mit.edu	37	chr5	94956254	94956254	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggtgcagctggccctggCggacctgtacgcgtgcgggg	19	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94956254	T	T	94956254	3	4	172	1	0	0	0	0	1	0	0	0	6721	768	27	4	277	4	GPR150	5	94956254	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4976855	94956254	85959006	377	140803											
LNPEP	4012	broad.mit.edu	37	chr5	96329351	96329351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgaacaggtcttcctcaGctgacatgtgggtagagagc	13	8	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96329351	T	T	96329351	1	4	172	0	1	0	0	0	0	0	0	0	8938	986	34	3		3	LNPEP	5	96329351	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1373097	96329351	84585909	378	140804											
FER	2241	broad.mit.edu	37	chr5	108171400	108171400	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacatttatgcattttgtttCtttgacaggttaccaaaaca	5	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108171400	G	G	108171400	1	3	172	0	1	0	0	0	0	0	0	0	5870	928	32	4		4	FER	5	108171400	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	11842049	108171400	72743860	379	140805											
MCC	4163	broad.mit.edu	37	chr5	112389746	112389746	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcactcttctccacattcCctctccccagtgttatttag	3	17	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112389746	G	G	112389746	1	3	172	0	1	0	0	0	0	0	0	0	9466	638	22	4		4	MCC	5	112389746	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4218346	112389746	68525514	380	140806											
AQPEP	206338	broad.mit.edu	37	chr5	115338980	115338980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagattctgaccatgactGggtgattttgaatttgaata	9	5	2	6			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115338980	T	T	115338980	3	4	172	1	0	0	0	0	1	0	0	0	836	1357	47	2	1986	2	AQPEP	5	115338980	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2949234	115338980	65576280	381	140807											
SEMA6A	57556	broad.mit.edu	37	chr5	115814324	115814324	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attctggccaaaaacttcaaGatgattcccttctctgatcc	5	12	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115814324	A	A	115814324	2	1	172	1	0	0	0	0	0	0	0	1	14152	932	33	4		4	SEMA6A	5	115814324	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	475344	115814324	65100936	382	140808											
SEMA6A	57556	broad.mit.edu	37	chr5	115831129	115831129	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatagtttctgcaggaagGgttgaaggcattagttccac	11	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115831129	A	A	115831129	3	1	172	1	0	0	0	0	1	0	0	0	14152	1232	43	4	2724	4	SEMA6A	5	115831129	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	16805	115831129	65084131	383	140809											
HSD17B4	3295	broad.mit.edu	37	chr5	118866961	118866961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttgttgtcgttgttagGgcgggaagcttcagagtacc	13	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118866961	T	T	118866961	3	4	172	1	0	0	0	0	1	0	0	0	7453	1246	43	2	1941	2	HSD17B4	5	118866961	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3035832	118866961	62048299	384	140810											
SRFBP1	153443	broad.mit.edu	37	chr5	121311046	121311046	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaaaaaaccaaagacgGgcgcaaagattgcttgaaga	10	7	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121311046	T	T	121311046	2	4	172	1	0	0	0	0	0	0	0	1	15262	1219	43	2		2	SRFBP1	5	121311046	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2444085	121311046	59604214	385	140811											
SNCAIP	9627	broad.mit.edu	37	chr5	121759192	121759192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatatgagcctgaaaacCagagtaaagacttcctaaac	7	10	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121759192	A	A	121759192	3	1	172	1	0	0	0	0	1	0	0	0	14955	595	21	2	770	2	SNCAIP	5	121759192	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	448146	121759192	59156068	386	140812											
SLC27A6	28965	broad.mit.edu	37	chr5	128351810	128351810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttattaaagaaatacatcgGtgcggtggctcatacctgta	9	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128351810	T	T	128351810	1	4	172	0	1	0	0	0	0	0	0	0	14644	1276	44	3		3	SLC27A6	5	128351810	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6592618	128351810	52563450	387	140813											
ACSL6	23305	broad.mit.edu	37	chr5	131296196	131296196	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtaacctttcaggagacAgccccaagataccaacctta	6	13	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131296196	T	T	131296196	1	4	172	0	1	0	0	0	0	0	0	0	181	203	7	5		5	ACSL6	5	131296196	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2944386	131296196	49619064	388	140814											
EGR1	1958	broad.mit.edu	37	chr5	137802793	137802793	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgaacactgacattttccctGagccacaaagccaggccttc	7	15	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137802793	A	A	137802793	3	1	172	1	0	0	0	0	1	0	0	0	5011	1291	45	4	661	4	EGR1	5	137802793	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	6506597	137802793	43112467	389	140815											
LRRTM2	26045	broad.mit.edu	37	chr5	138210660	138210660	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttagactcaacgcagtgagtCtgtaaaaggctctaacatgt	9	8	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138210660	G	G	138210660	1	3	172	0	1	0	0	0	0	0	0	0	9127	928	32	4		4	LRRTM2	5	138210660	5'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	407867	138210660	42704600	390	140816											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139864795	139864795	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctggcagttgttgagcttCtcttggctcatggggctgac	13	10	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139864795	T	T	139864795	3	4	172	1	0	0	0	0	1	0	0	0	629	913	32	4	2006	4	ANKHD1-EIF4EBP3	5	139864795	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1654135	139864795	41050465	391	140817											
PCDHA3	56145	broad.mit.edu	37	chr5	140182888	140182888	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcaacgtgtacttgatcgtCgccatctgcgcggtgtccag	12	12	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140182888	T	T	140182888	2	4	172	1	0	0	0	0	0	0	0	1	11619	871	31	4		4	PCDHA3	5	140182888	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	318093	140182888	40732372	392	140818											
PCDHA8	56140	broad.mit.edu	37	chr5	140222831	140222831	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcctggacgaagcggactCtccgcgccaccgtctgctgg	13	15	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140222831	G	G	140222831	3	3	172	1	0	0	0	0	1	0	0	0	11624	913	32	4	1927	4	PCDHA8	5	140222831	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	39943	140222831	40692429	393	140819											
PCDHA13	56136	broad.mit.edu	37	chr5	140262933	140262933	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtcactccccatcagAgaagacactcagcctagcgc	7	15	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140262933	T	T	140262933	3	4	172	1	0	0	0	0	1	0	0	0	11617	301	11	5	1082	5	PCDHA13	5	140262933	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	40102	140262933	40652327	394	140820											
PCDHB16	57717	broad.mit.edu	37	chr5	140563269	140563269	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgactccggaaacaatGggaagacgatttcctccatc	8	12	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140563269	T	T	140563269	3	4	172	1	0	0	0	0	1	0	0	0	11635	1348	47	2	1137	2	PCDHB16	5	140563269	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	300336	140563269	40351991	395	140821											
PCDHB10	56126	broad.mit.edu	37	chr5	140574557	140574557	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagtttcatatacttttgGtgtgttacatagccatgttt	7	5	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140574557	T	T	140574557	1	4	172	0	1	0	0	0	0	0	0	0	11629	1276	44	3		3	PCDHB10	5	140574557	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	11288	140574557	40340703	396	140822											
PCDHB13	56123	broad.mit.edu	37	chr5	140595649	140595649	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacaatggcgagcctccgCgctcggccaccgccacgctg	13	17	0	0	rs141899378		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140595649	T	T	140595649	3	4	172	1	0	0	0	0	1	0	0	0	11632	768	27	4	1956	4	PCDHB13	5	140595649	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	21092	140595649	40319611	397	140823											
PCDHGB6	56100	broad.mit.edu	37	chr5	140788541	140788541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgaaaatctgccccctGggtcccctgtgttgcaagtg	11	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140788541	T	T	140788541	3	4	172	1	0	0	0	0	1	0	0	0	11661	1348	47	2	774	2	PCDHGB6	5	140788541	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	192892	140788541	40126719	398	140824											
PCDHGA12	26025	broad.mit.edu	37	chr5	140812476	140812476	+	Frame_Shift_Del	DEL	G	-	-													gctgctggcgctcaggctgcGgcgctggcacaagtcacgcc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140812476	-	-	140812476	7	5	172	1	0	1	0	1	0	0	0	0	11647	1116	39	0	2152	0	PCDHGA12	5	140812476	Frame_Shift_Del	DEL	G	TCGA-50-6594-01A-11D-1753-08	23935	140812476	40102784	399	140825											
FCHSD1	89848	broad.mit.edu	37	chr5	141022678	141022679	+	Intron	INS	-	T	T													gaggtggggtgggcacagagINSttattcctggcatgtgggga							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141022679	T	T	141022678	6	5	172	0	1	1	1	0	0	0	0	0	5846	1044	36	0		0	FCHSD1	5	141022678	Intron	INS	-	TCGA-50-6594-01A-11D-1753-08	210202	141022678	39892582	400	140826											
KCTD16	57528	broad.mit.edu	37	chr5	143586840	143586840	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcagatgccaagtttcggaGagttccccggattttggttt	13	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143586840	T	T	143586840	3	4	172	1	0	0	0	0	1	0	0	0	8173	942	33	3	565	3	KCTD16	5	143586840	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2564162	143586840	37328420	401	140827											
PPP2R2B	5521	broad.mit.edu	37	chr5	146257541	146257541	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgcccggccccaacggcGgaatgcggcggggctggcgt	18	14	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146257541	A	A	146257541	1	1	172	0	1	0	0	0	0	0	0	0	12486	1131	39	4		4	PPP2R2B	5	146257541	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2670701	146257541	34657719	402	140828											
HTR4	3360	broad.mit.edu	37	chr5	147889330	147889330	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagggtcttggctgctttGgtctctgtcctcatgcgatg	12	11	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147889330	C	C	147889330	2	2	172	1	0	0	0	0	0	0	0	1	7519	1335	47	4		4	HTR4	5	147889330	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1631789	147889330	33025930	403	140829											
ABLIM3	22885	broad.mit.edu	37	chr5	148577968	148577968	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtgtgcagcttgtgcaggtGagtgggcgaccagcagggcc	18	10	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148577968	A	A	148577968	1	1	172	0	1	0	0	0	0	0	0	0	96	1305	45	4		4	ABLIM3	5	148577968	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	688638	148577968	32337292	404	140830											
FAT2	2196	broad.mit.edu	37	chr5	150924435	150924435	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaagaggacatcccctgGctctgtgccatcttggatga	11	11	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150924435	C	C	150924435	3	2	172	1	0	0	0	0	1	0	0	0	5747	1203	42	4	6856	4	FAT2	5	150924435	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2346467	150924435	29990825	405	140831											
G3BP1	10146	broad.mit.edu	37	chr5	151166233	151166233	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgggcgggaatttgtgagaCagtattacacactgctgaac	12	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151166233	T	T	151166233	4	4	172	1	0	0	0	0	0	1	0	0	6201	479	17	4	54	4	G3BP1	5	151166233	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	241798	151166233	29749027	406	140832											
ADAM19	8728	broad.mit.edu	37	chr5	156899239	156899239	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggtttgtctgactctagaGcccacgatcttaatgctacc	9	12	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156899239	C	C	156899239	1	2	172	0	1	0	0	0	0	0	0	0	240	986	34	4		4	ADAM19	5	156899239	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5733006	156899239	24016021	407	140833											
ADAM19	8728	broad.mit.edu	37	chr5	156921692	156921692	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggcctgccctttggtcatCacctcatgttgcacttcctg	9	14	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156921692	A	A	156921692	1	1	172	0	1	0	0	0	0	0	0	0	240	841	29	3		3	ADAM19	5	156921692	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	22453	156921692	23993568	408	140834											
GABRA6	2559	broad.mit.edu	37	chr5	161113500	161113500	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtatgttcccatccagtctCtgcctcatccaccattagta	6	14	2	0	rs113567255		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161113500	G	G	161113500	1	3	172	0	1	0	0	0	0	0	0	0	6225	928	32	4		4	GABRA6	5	161113500	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4191808	161113500	19801760	409	140835											
SLIT3	6586	broad.mit.edu	37	chr5	168212820	168212820	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttttgtctgcagaaagtCaaaagaactctccagagcat	7	10	4	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168212820	G	G	168212820	1	3	172	0	1	0	0	0	0	0	0	0	14855	841	29	4		4	SLIT3	5	168212820	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	7099320	168212820	12702440	410	140836											
DOCK2	1794	broad.mit.edu	37	chr5	169454779	169454779	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggagataaagagtgctccCtaaagctttggttgaaataa	11	5	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169454779	T	T	169454779	1	4	172	0	1	0	0	0	0	0	0	0	4727	696	24	4		4	DOCK2	5	169454779	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1241959	169454779	11460481	411	140837											
HRH2	3274	broad.mit.edu	37	chr5	175110971	175110971	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcatgggggccttcatcatCtgctggtttccctacttcac	9	13	5	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175110971	G	G	175110971	3	3	172	1	0	0	0	0	1	0	0	0	7423	903	32	4	737	4	HRH2	5	175110971	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	5656192	175110971	5804289	412	140838											
CPLX2	10814	broad.mit.edu	37	chr5	175305868	175305868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctccccagccctgacCcctagctgaccccgccctct	5	24	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175305868	A	A	175305868	1	1	172	0	1	0	0	0	0	0	0	0	3837	638	22	2		2	CPLX2	5	175305868	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	194897	175305868	5609392	413	140839											
DBN1	1627	broad.mit.edu	37	chr5	176894891	176894891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgatagggtgcatcttcccCggggtgggaagagggtgggc	19	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176894891	A	A	176894891	1	1	172	0	1	0	0	0	0	0	0	0	4285	667	23	1		1	DBN1	5	176894891	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1589023	176894891	4020369	414	140840											
FAM193B	54540	broad.mit.edu	37	chr5	176951058	176951058	+	Intron	SNP	T	C	C													gaagacacagccaggagggcTcagtgcccatggccaggcct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176951058	C	C	176951058	1	2	172	0	1	0	0	0	0	0	0	0	5572	1566	54	5		5	FAM193B	5	176951058	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	56167	176951058	3964202	415	140841	604	2									
FAM193B	54540	broad.mit.edu	37	chr5	176951068	176951068	+	Intron	SNP	T	C	C													ccaggagggctcagtgcccaTggccaggcctttggggttat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176951068	C	C	176951068	1	2	172	0	1	0	0	0	0	0	0	0	5572	1479	51	5		5	FAM193B	5	176951068	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	10	176951068	3964192	416	140842	604	2									
FAM153C	653316	broad.mit.edu	37	chr5	177473998	177473998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgcccatgttcttcttGgctacgctcactttcttgtt	7	13	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177473998	T	T	177473998	1	4	172	0	1	0	0	0	0	0	0	0	5508	1363	47	2		2	FAM153C	5	177473998	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	522930	177473998	3441262	417	140843											
ZNF454	285676	broad.mit.edu	37	chr5	178392950	178392950	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaacctcattcagcatcaGagacatcatattggagagaa	8	9	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178392950	A	A	178392950	2	1	172	1	0	0	0	0	0	0	0	1	18050	933	33	4		4	ZNF454	5	178392950	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	918952	178392950	2522310	418	140844											
MAML1	9794	broad.mit.edu	37	chr5	179192681	179192681	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaggagcctgtcgaagacCtgccttgcatgatcactggg	13	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179192681	G	G	179192681	3	3	172	1	0	0	0	0	1	0	0	0	9297	680	24	4	676	4	MAML1	5	179192681	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	799731	179192681	1722579	419	140845											
FLT4	2324	broad.mit.edu	37	chr5	180036999	180037000	+	Missense_Mutation	DNP	CC	AA	AA													cagcccctctggccaggcacCcgggaaaggacacccagttg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	180037000	AA	AA	180036999	3	1	172	1	0	0	0	0	1	0	0	0	6002	623	22	2	398	2	FLT4	5	180036999	Missense_Mutation	DNP	CC	TCGA-50-6594-01A-11D-1753-08	844318	180036999	878261	420	140846											
MYLIP	29116	broad.mit.edu	37	chr6	16130898	16130898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccggatctcccagcagatGgatgggctagccccttacag	11	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16130898	T	T	16130898	3	4	172	1	0	0	0	0	1	0	0	0	10149	1348	47	2	204	2	MYLIP	6	16130898	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08		16130898	154984169	421	140847											
KIAA0319	9856	broad.mit.edu	37	chr6	24582439	24582439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagctctatgccgttacGctgtgctgttagacacaacc	9	12	1	2	rs144288503	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24582439	T	T	24582439	1	4	172	0	1	0	0	0	0	0	0	0	8238	1102	38	3		3	KIAA0319	6	24582439	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	8451541	24582439	146532628	422	140848											
MOG	4340	broad.mit.edu	37	chr6	29627268	29627268	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaatggcaaggaccaagaTggagaccaggcacctgaata	12	8	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29627268	C	C	29627268	2	2	172	1	0	0	0	0	0	0	0	1	9787	1461	51	5		5	MOG	6	29627268	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	5044829	29627268	141487799	423	140849											
MICB	4277	broad.mit.edu	37	chr6	31477804	31477804	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatttattgttgttggatGctgcaaagtgttagtaggta	11	3	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31477804	T	T	31477804	1	4	172	0	1	0	0	0	0	0	0	0	9668	1334	46	3		3	MICB	6	31477804	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	1850536	31477804	139637263	424	140850											
TNF	7124	broad.mit.edu	37	chr6	31543733	31543733	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggccagccttcatccactCtcccacccaaggggaaatgg	9	16	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31543733	G	G	31543733	1	3	172	0	1	0	0	0	0	0	0	0	16394	928	32	4		4	TNF	6	31543733	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	65929	31543733	139571334	425	140851											
MSH5	4439	broad.mit.edu	37	chr6	31726371	31726371	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatcgcttcacagtcctccCcaacatagatcctgaaattg	5	13	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31726371	G	G	31726371	3	3	172	1	0	0	0	0	1	0	0	0	9967	623	22	4	1291	4	MSH5	6	31726371	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	182638	31726371	139388696	426	140852											
C2	717	broad.mit.edu	37	chr6	31913078	31913078	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcacatcaatctcttccgcAtgcagccctggctgaggcag	9	14	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31913078	G	G	31913078	3	3	172	1	0	0	0	0	1	0	0	0	2096	217	8	5	2350	5	C2	6	31913078	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	186707	31913078	139201989	427	140853											
COL11A2	1302	broad.mit.edu	37	chr6	33143702	33143702	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactggaactgtggagtctgGagactcaggagaataaaccg	13	8	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33143702	A	A	33143702	1	1	172	0	1	0	0	0	0	0	0	0	3700	1189	41	4		4	COL11A2	6	33143702	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1230624	33143702	137971365	428	140854											
BAK1	578	broad.mit.edu	37	chr6	33543420	33543420	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggatacaaggtcctggaTgggggtgggagcccaacata	15	7	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33543420	A	A	33543420	1	1	172	0	1	0	0	0	0	0	0	0	1310	1479	51	5		5	BAK1	6	33543420	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	399718	33543420	137571647	429	140855											
C6orf222	389384	broad.mit.edu	37	chr6	36293104	36293104	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagctcctctccaggttccTggctctctgatggggtggga	14	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36293104	C	C	36293104	3	2	172	1	0	0	0	0	1	0	0	0	2379	1580	55	5	862	5	C6orf222	6	36293104	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	2749684	36293104	134821963	430	140856											
C6orf222	389384	broad.mit.edu	37	chr6	36297678	36297693	+	Intron	DEL	GAAGGAAGGAAGGAAA	-	-													aaggaggaggaggaggagagGaaggaaggaaggaaagaagg					rs6913729		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36297693	-	-	36297678	6	5	172	0	1	1	0	1	0	0	0	0	2379	1189	41	0		0	C6orf222	6	36297678	Intron	DEL	GAAGGAAGGAAGGAAA	TCGA-50-6594-01A-11D-1753-08	4574	36297678	134817389	431	140857											
DNAH8	1769	broad.mit.edu	37	chr6	38840708	38840708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattttcctcattttagatGgtcctgtggatgccatctgg	9	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38840708	T	T	38840708	3	4	172	1	0	0	0	0	1	0	0	0	4647	1348	47	2	6799	2	DNAH8	6	38840708	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2543030	38840708	132274359	432	140858											
KCNK17	89822	broad.mit.edu	37	chr6	39271904	39271904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagccaccgcgccttgtcagGatcctgtgggtgcaacattg	12	13	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39271904	T	T	39271904	3	4	172	1	0	0	0	0	1	0	0	0	8134	1174	41	3	621	3	KCNK17	6	39271904	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	431196	39271904	131843163	433	140859											
PTCRA	171558	broad.mit.edu	37	chr6	42890818	42890818	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caccaatcatgctgctggtgGatggaaagcagcagatggtg	14	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42890818	C	C	42890818	3	2	172	1	0	0	0	0	1	0	0	0	12841	1174	41	4	118	4	PTCRA	6	42890818	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3618914	42890818	128224249	434	140860											
KLHDC3	116138	broad.mit.edu	37	chr6	42985740	42985740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaataagaggtttagggtGggactgagaaagaggggaag	17	1	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42985740	T	T	42985740	1	4	172	0	1	0	0	0	0	0	0	0	8428	1363	47	2		2	KLHDC3	6	42985740	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	94922	42985740	128129327	435	140861											
CUL7	9820	broad.mit.edu	37	chr6	43019062	43019062	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggccatactgaactccagctCcagttgacccctctccccac	6	19	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43019062	G	G	43019062	3	3	172	1	0	0	0	0	1	0	0	0	4093	864	30	4	4311	4	CUL7	6	43019062	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	33322	43019062	128096005	436	140862											
GPR111	222611	broad.mit.edu	37	chr6	47645719	47645719	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgtggcatggcagatGgaatccttgatgactctgat	12	8	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47645719	T	T	47645719	1	4	172	0	1	0	0	0	0	0	0	0	6693	1363	47	2		2	GPR111	6	47645719	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4626657	47645719	123469348	437	140863											
DEFB110	245913	broad.mit.edu	37	chr6	49989688	49989688	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagggggcaacagacctccTttttcaagtcagttgttttg	10	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49989688	A	A	49989688	1	1	172	1	0	0	0	0	0	0	0	0	4439	1624	56	5		5	DEFB110	6	49989688	Translation_Start_Site	SNP	T	TCGA-50-6594-01A-11D-1753-08	2343969	49989688	121125379	438	140864											
TFAP2B	7021	broad.mit.edu	37	chr6	50791266	50791266	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccacccccctaccagccGctcccctaccaccagagcca	4	24	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50791266	T	T	50791266	2	4	172	1	0	0	0	0	0	0	0	1	15911	1074	38	3		3	TFAP2B	6	50791266	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	801578	50791266	120323801	439	140865											
PKHD1	5314	broad.mit.edu	37	chr6	51640784	51640784	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaagagagggagaaatTgcagtataatttcaataatg	10	2	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51640784	A	A	51640784	1	1	172	0	1	0	0	0	0	0	0	0	12066	1827	63	5		5	PKHD1	6	51640784	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	849518	51640784	119474283	440	140866											
GSTA4	2941	broad.mit.edu	37	chr6	52852158	52852158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcattttcatactcaccatCctgcaacttgtacaactgtt	3	12	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52852158	A	A	52852158	3	1	172	1	0	0	0	0	1	0	0	0	6899	855	30	3	552	3	GSTA4	6	52852158	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1211374	52852158	118262909	441	140867											
COL19A1	1310	broad.mit.edu	37	chr6	70894799	70894799	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagacagaggccccaaaGgagaacgtgtatgtatatta	12	7	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70894799	T	T	70894799	4	4	172	1	0	0	0	0	0	1	0	0	3708	1001	35	2	3026	2	COL19A1	6	70894799	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	18042641	70894799	100220268	442	140868											
COL9A1	1297	broad.mit.edu	37	chr6	71012515	71012515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctctcaccttgaggctcaCctactctcatcttaccactg	5	16	5	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71012515	A	A	71012515	1	1	172	0	1	0	0	0	0	0	0	0	3739	522	18	3		3	COL9A1	6	71012515	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	117716	71012515	100102552	443	140869											
C6orf221	154288	broad.mit.edu	37	chr6	74073453	74073453	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggttctccggtggaggtgcAggaggccgggacccagcagt	19	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74073453	C	C	74073453	3	2	172	1	0	0	0	0	1	0	0	0	2378	188	7	5	534	5	C6orf221	6	74073453	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	3060938	74073453	97041614	444	140870											
DDX43	55510	broad.mit.edu	37	chr6	74115454	74115454	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggatggggagaaacgaCctatccccaatcctacctgc	10	12	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74115454	A	A	74115454	3	1	172	1	0	0	0	0	1	0	0	0	4396	507	18	3	725	3	DDX43	6	74115454	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	42001	74115454	96999613	445	140871											
COL12A1	1303	broad.mit.edu	37	chr6	75839971	75839971	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaataaataaaatacaataGagtttgttgcctgcctgtga	7	5	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75839971	A	A	75839971	1	1	172	0	1	0	0	0	0	0	0	0	3701	957	33	4		4	COL12A1	6	75839971	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1724517	75839971	95275096	446	140872											
MYO6	4646	broad.mit.edu	37	chr6	76545769	76545769	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctctcagagatgcaaaaGactctcttatctcctactaa	4	12	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76545769	A	A	76545769	1	1	172	0	1	0	0	0	0	0	0	0	10175	957	33	4		4	MYO6	6	76545769	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	705798	76545769	94569298	447	140873											
CYB5R4	51167	broad.mit.edu	37	chr6	84627835	84627835	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatcaattatgtacaaaaAtgtacacatttaaaaaataa	2	4	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84627835	T	T	84627835	1	4	172	0	1	0	0	0	0	0	0	0	4162	116	4	5		5	CYB5R4	6	84627835	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	8082066	84627835	86487232	448	140874											
CYB5R4	51167	broad.mit.edu	37	chr6	84650150	84650150	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgggcactaaaacattcaCactggttcactttagacttt	6	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84650150	T	T	84650150	1	4	172	0	1	0	0	0	0	0	0	0	4162	493	17	4		4	CYB5R4	6	84650150	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	22315	84650150	86464917	449	140875											
KIAA0776	23376	broad.mit.edu	37	chr6	96976537	96976537	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttaaagtatatatatttGcacatttctttgatcatggt	5	4	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96976537	T	T	96976537	1	4	172	0	1	0	0	0	0	0	0	0	8263	1334	46	3		3	KIAA0776	6	96976537	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	12326387	96976537	74138530	450	140876											
KIAA0776	23376	broad.mit.edu	37	chr6	96997507	96997507	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attgattttcataatttgggGaataaattagttttaataaa	6	1	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96997507	T	T	96997507	1	4	172	0	1	0	0	0	0	0	0	0	8263	1189	41	3		3	KIAA0776	6	96997507	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	20970	96997507	74117560	451	140877											
ASCC3	10973	broad.mit.edu	37	chr6	101166053	101166053	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatggattaacatgtaaaaaTgtggcaacatcgaggtagtt	10	4	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101166053	A	A	101166053	2	1	172	1	0	0	0	0	0	0	0	1	1037	1451	51	5		5	ASCC3	6	101166053	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	4168546	101166053	69949014	452	140878											
BVES	11149	broad.mit.edu	37	chr6	105564768	105564768	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagaaacaagcatgcaaaGaataaagtacatctatgtat	6	6	1	2	rs145419931	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105564768	A	A	105564768	1	1	172	0	1	0	0	0	0	0	0	0	1585	957	33	4		4	BVES	6	105564768	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4398715	105564768	65550299	453	140879											
ATG5	9474	broad.mit.edu	37	chr6	106682090	106682090	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctagcccctacaaaggactaGatctcttaaaactacatgaa	5	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106682090	C	C	106682090	1	2	172	0	1	0	0	0	0	0	0	0	1104	957	33	4		4	ATG5	6	106682090	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1117322	106682090	64432977	454	140880											
QRSL1	55278	broad.mit.edu	37	chr6	107100454	107100454	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactatgtataggaattccAaaggtaactttttcctttca	5	7	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107100454	G	G	107100454	2	3	172	1	0	0	0	0	0	0	0	1	12989	117	5	5		5	QRSL1	6	107100454	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	418364	107100454	64014613	455	140881											
FAM26D	221301	broad.mit.edu	37	chr6	116879196	116879196	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctatttggcttcattcCcgggagtgaagacgtcaaac	11	9	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116879196	T	T	116879196	3	4	172	1	0	0	0	0	1	0	0	0	5600	623	22	4	211	4	FAM26D	6	116879196	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	9778742	116879196	54235871	456	140882											
NKAIN2	154215	broad.mit.edu	37	chr6	124676334	124676334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatcttatattagggtgtGcgaaagttcgttttatttga	9	4	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124676334	T	T	124676334	1	4	172	0	1	0	0	0	0	0	0	0	10531	1334	46	3		3	NKAIN2	6	124676334	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7797138	124676334	46438733	457	140883											
RNF217	154214	broad.mit.edu	37	chr6	125366429	125366429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggaagaaacaactgttGtctataacttaacgcatgaa	7	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125366429	T	T	125366429	3	4	172	1	0	0	0	0	1	0	0	0	13592	1377	48	3	85	3	RNF217	6	125366429	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	690095	125366429	45748638	458	140884											
LAMA2	3908	broad.mit.edu	37	chr6	129479461	129479461	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttctcgaaaccagctgGcttcttcagtggtaaagaat	9	9	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129479461	T	T	129479461	1	4	172	0	1	0	0	0	0	0	0	0	8678	1218	42	3		3	LAMA2	6	129479461	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4113032	129479461	41635606	459	140885											
LAMA2	3908	broad.mit.edu	37	chr6	129513743	129513743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttaatttccaaaagtGgacacgaccaggaacatgaa	8	7	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129513743	T	T	129513743	1	4	172	0	1	0	0	0	0	0	0	0	8678	1363	47	2		2	LAMA2	6	129513743	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	34282	129513743	41601324	460	140886											
SAMD3	154075	broad.mit.edu	37	chr6	130535490	130535490	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacatactcactctcgagcTgcttctgtttgcatgaccag	8	12	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130535490	A	A	130535490	2	1	172	1	0	0	0	0	0	0	0	1	13931	1567	55	5		5	SAMD3	6	130535490	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	1021747	130535490	40579577	461	140887											
TMEM200A	114801	broad.mit.edu	37	chr6	130762639	130762639	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggggagtcgttgtcgagtCagtacaagtcatctatggct	13	7	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130762639	A	A	130762639	3	1	172	1	0	0	0	0	1	0	0	0	16246	827	29	3	1074	3	TMEM200A	6	130762639	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	227149	130762639	40352428	462	140888											
ENPP3	5169	broad.mit.edu	37	chr6	132047241	132047241	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcctagggtactgcagaaGaacgtggaccactgtctcct	12	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132047241	T	T	132047241	3	4	172	1	0	0	0	0	1	0	0	0	5173	933	33	3	1932	3	ENPP3	6	132047241	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1284602	132047241	39067826	463	140889											
VNN1	8876	broad.mit.edu	37	chr6	133014272	133014272	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacaaatgtggcaaaacattCatccaagctgttgggaatac	9	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133014272	T	T	133014272	3	4	172	1	0	0	0	0	1	0	0	0	17309	826	29	4	840	4	VNN1	6	133014272	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	967031	133014272	38100795	464	140890											
TBPL1	9519	broad.mit.edu	37	chr6	134301367	134301367	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggaagattgctttggaagGagcaaatgtaatttataaac	10	3	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134301367	A	A	134301367	3	1	172	1	0	0	0	0	1	0	0	0	15767	1174	41	4	106	4	TBPL1	6	134301367	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1287095	134301367	36813700	465	140891											
IL22RA2	116379	broad.mit.edu	37	chr6	137479413	137479413	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagctcggatcctaacActccattgcattctagaaca	5	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137479413	T	T	137479413	1	4	172	0	1	0	0	0	0	0	0	0	7744	174	6	5		5	IL22RA2	6	137479413	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3178046	137479413	33635654	466	140892											
PLAGL1	5325	broad.mit.edu	37	chr6	144263191	144263191	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggacctcagctggcaagctActtgcaagcccgttctgggc	12	13	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144263191	T	T	144263191	3	4	172	1	0	0	0	0	1	0	0	0	12114	388	14	5	633	5	PLAGL1	6	144263191	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	6783778	144263191	26851876	467	140893											
ULBP2	80328	broad.mit.edu	37	chr6	150267592	150267592	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcagttcagtttcgatgGgcagatcttcctcctctttg	10	10	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150267592	A	A	150267592	3	1	172	1	0	0	0	0	1	0	0	0	17099	1232	43	4	444	4	ULBP2	6	150267592	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	6004401	150267592	20847475	468	140894											
SYNE1	23345	broad.mit.edu	37	chr6	152501421	152501421	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacctatttgctgccgcctTaaggagagctgaaaagttta	9	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152501421	A	A	152501421	3	1	172	1	0	0	0	0	1	0	0	0	15564	1751	61	5	3228	5	SYNE1	6	152501421	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	2233829	152501421	18613646	469	140895											
MYCT1	80177	broad.mit.edu	37	chr6	153027241	153027241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgggtggaatgggaggtgGtatgagaggtggcatgttct	19	2	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153027241	A	A	153027241	1	1	172	0	1	0	0	0	0	0	0	0	10116	1276	44	4		4	MYCT1	6	153027241	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	525820	153027241	18087826	470	140896											
SERAC1	84947	broad.mit.edu	37	chr6	158532359	158532359	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaacaccaagtttcttGcactgaattcacatatgaaa	5	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158532359	T	T	158532359	1	4	172	0	1	0	0	0	0	0	0	0	14187	1334	46	3		3	SERAC1	6	158532359	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	5505118	158532359	12582708	471	140897											
PARK2	5071	broad.mit.edu	37	chr6	161771155	161771155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtcgaaccagtggtccccCatgcagacgcggttccactc	10	16	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161771155	A	A	161771155	3	1	172	1	0	0	0	0	1	0	0	0	11543	594	21	2	27	2	PARK2	6	161771155	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3238796	161771155	9343912	472	140898											
C6orf118	168090	broad.mit.edu	37	chr6	165706873	165706874	+	Intron	DNP	AT	TA	TA													aaggtcacagcaaagcacccAtaaggaaggacatcacacag							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	165706874	TA	TA	165706873	1	4	172	0	1	0	0	0	0	0	0	0	2346	232	8	5		5	C6orf118	6	165706873	Intron	DNP	AT	TCGA-50-6594-01A-11D-1753-08	3935718	165706873	5408194	473	140899											
THBS2	7058	broad.mit.edu	37	chr6	169648614	169648614	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccagagcgaagctgtctatGaggtcgcagcccacgtgcaa	12	12	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169648614	A	A	169648614	2	1	172	1	0	0	0	0	0	0	0	1	15977	1277	45	4		4	THBS2	6	169648614	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	3941741	169648614	1466453	474	140900											
DLL1	28514	broad.mit.edu	37	chr6	170594559	170594559	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagataggaagctcgacatCaaatgcaggaagactttatt	11	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170594559	T	T	170594559	1	4	172	0	1	0	0	0	0	0	0	0	4606	841	29	4		4	DLL1	6	170594559	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	945945	170594559	520508	475	140901											
CARD11	84433	broad.mit.edu	37	chr7	2949713	2949713	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgttcttctcacacacCcggatgaagagcacgatggg	11	10	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2949713	T	T	2949713	2	4	172	1	0	0	0	0	0	0	0	1	2671	610	22	4		4	CARD11	7	2949713	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08		2949713	156188950	476	140902											
PMS2	5395	broad.mit.edu	37	chr7	6038725	6038725	+	Intron	DEL	C	-	-													aataagaggcgttgaagtaaCcggccatcactacctgcttc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6038725	-	-	6038725	6	5	172	0	1	1	0	1	0	0	0	0	12238	522	18	0		0	PMS2	7	6038725	Intron	DEL	C	TCGA-50-6594-01A-11D-1753-08	3089012	6038725	153099938	477	140903											
EIF2AK1	27102	broad.mit.edu	37	chr7	6080771	6080771	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcagattctccaaagcGtttttctttttctggggtgg	11	7	4	1	rs143036043	byFrequency	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6080771	A	A	6080771	3	1	172	1	0	0	0	0	1	0	0	0	5036	1145	40	4	1049	4	EIF2AK1	7	6080771	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	42046	6080771	153057892	478	140904											
ABCB5	340273	broad.mit.edu	37	chr7	20687598	20687598	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttttccaagaaacccaGtatagataacttttccacag	5	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20687598	T	T	20687598	1	4	172	0	1	0	0	0	0	0	0	0	44	1029	36	3		3	ABCB5	7	20687598	5'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	14606827	20687598	138451065	479	140905											
DNAH11	8701	broad.mit.edu	37	chr7	21789479	21789479	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacaaattatctgtagtttCagtgaactttaaagagagag	9	4	2	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21789479	A	A	21789479	1	1	172	0	1	0	0	0	0	0	0	0	4639	841	29	3		3	DNAH11	7	21789479	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1101881	21789479	137349184	480	140906											
RAPGEF5	9771	broad.mit.edu	37	chr7	22175692	22175692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaaagggatttttggtgGcttcatctttttgaatgcat	10	5	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22175692	T	T	22175692	3	4	172	1	0	0	0	0	1	0	0	0	13155	1203	42	3	287	3	RAPGEF5	7	22175692	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	386213	22175692	136962971	481	140907											
KLHL7	55975	broad.mit.edu	37	chr7	23213895	23213895	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcgatacttgtggagcaaAtgaagagacccttgaaacat	10	7	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23213895	G	G	23213895	3	3	172	1	0	0	0	0	1	0	0	0	8465	101	4	5	1844	5	KLHL7	7	23213895	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1038203	23213895	135924768	482	140908											
CREB5	9586	broad.mit.edu	37	chr7	28610176	28610176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggagccctccttggctGcccctgggtcctggctggaa	14	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28610176	T	T	28610176	1	4	172	0	1	0	0	0	0	0	0	0	3892	1334	46	3		3	CREB5	7	28610176	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5396281	28610176	130528487	483	140909											
LSM5	23658	broad.mit.edu	37	chr7	32530016	32530016	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccttcattgatggtgggAcgactttgaaaagcgcgctt	12	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32530016	C	C	32530016	1	2	172	0	1	0	0	0	0	0	0	0	9146	290	10	5		5	LSM5	7	32530016	5'UTR	SNP	A	TCGA-50-6594-01A-11D-1753-08	3919840	32530016	126608647	484	140910											
AOAH	313	broad.mit.edu	37	chr7	36713442	36713442	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaataacacctcgagccctgTccagaaagcgcatcatgctg	9	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36713442	A	A	36713442	1	1	172	0	1	0	0	0	0	0	0	0	728	1682	58	5		5	AOAH	7	36713442	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	4183426	36713442	122425221	485	140911											
POLM	27434	broad.mit.edu	37	chr7	44118469	44118469	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggaagaaagagaagggCggggagttagggtcagggct	21	4	1	2	rs150582649	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44118469	G	G	44118469	1	3	172	0	1	0	0	0	0	0	0	0	12301	783	27	4		4	POLM	7	44118469	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	7405027	44118469	115020194	486	140912											
NPC1L1	29881	broad.mit.edu	37	chr7	44561205	44561205	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcccccgacagaccctgcAggatgcgtgggagaggttga	15	11	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44561205	T	T	44561205	1	4	172	0	1	0	0	0	0	0	0	0	10666	203	7	5		5	NPC1L1	7	44561205	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	442736	44561205	114577458	487	140913											
ABCA13	154664	broad.mit.edu	37	chr7	48547487	48547487	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctggagagcatccgtcagTgtggagtggccctctgcatc	14	12	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48547487	A	A	48547487	3	1	172	1	0	0	0	0	1	0	0	0	31	1696	59	5	13393	5	ABCA13	7	48547487	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	3986282	48547487	110591176	488	140914											
POM121L12	285877	broad.mit.edu	37	chr7	53103905	53103905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggagactctgctggggGcgctcagccagtgccccaag	15	15	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103905	T	T	53103905	3	4	172	1	0	0	0	0	1	0	0	0	12336	1203	42	3	543	3	POM121L12	7	53103905	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	4556418	53103905	106034758	489	140915											
ZNF479	90827	broad.mit.edu	37	chr7	57187552	57187552	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggactttgccatattattCacatttgtagggtttctctc	8	8	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57187552	A	A	57187552	4	1	172	1	0	0	0	0	0	1	0	0	18060	835	29	3	8	3	ZNF479	7	57187552	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4083647	57187552	101951111	490	140916											
ZNF479	90827	broad.mit.edu	37	chr7	57193642	57193642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatcaaagcacagctccCcagaccacattttaaggact	5	13	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57193642	A	A	57193642	1	1	172	0	1	0	0	0	0	0	0	0	18060	638	22	2		2	ZNF479	7	57193642	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6090	57193642	101945021	491	140917											
AUTS2	26053	broad.mit.edu	37	chr7	69583203	69583203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccaccggagcagctctcGggaaaggctcagtgatgtaa	12	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69583203	T	T	69583203	3	4	172	1	0	0	0	0	1	0	0	0	1230	1116	39	1	618	1	AUTS2	7	69583203	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	12389561	69583203	89555460	492	140918											
WBSCR17	64409	broad.mit.edu	37	chr7	71130631	71130631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtacagtgatccttactGtttgatcactatttatttaa	5	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71130631	T	T	71130631	1	4	172	0	1	0	0	0	0	0	0	0	17391	1392	48	3		3	WBSCR17	7	71130631	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1547428	71130631	88008032	493	140919											
SEMA3C	10512	broad.mit.edu	37	chr7	80374574	80374574	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagaaccctgaacagagCggatcaggagtccctgtgaa	13	10	2	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80374574	A	A	80374574	3	1	172	1	0	0	0	0	1	0	0	0	14139	768	27	3	367	3	SEMA3C	7	80374574	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	9243943	80374574	78764089	494	140920											
PCLO	27445	broad.mit.edu	37	chr7	82585288	82585288	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcggcgtagccctcctcCtccagtaactacaagttctt	6	14	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82585288	A	A	82585288	4	1	172	1	0	0	0	0	0	1	0	0	11677	690	24	2	10548	2	PCLO	7	82585288	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2210714	82585288	76553375	495	140921											
SEMA3A	10371	broad.mit.edu	37	chr7	83634655	83634655	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaatttaaaaatttacCtgttccgataaacataacat	4	7	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83634655	T	T	83634655	3	4	172	1	0	0	0	0	1	0	0	0	14137	695	24	4	983	4	SEMA3A	7	83634655	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1049367	83634655	75504008	496	140922											
CCDC132	55610	broad.mit.edu	37	chr7	92861895	92861895	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtccccaaccagtggcGggcggggatctaagttatgg	14	10	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92861895	T	T	92861895	1	4	172	0	1	0	0	0	0	0	0	0	2793	1131	39	1		1	CCDC132	7	92861895	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	9227240	92861895	66276768	497	140923											
TFPI2	7980	broad.mit.edu	37	chr7	93516687	93516687	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttggattaaaataatagcGagtcacattggcagagcaca	9	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93516687	A	A	93516687	3	1	172	1	0	0	0	0	1	0	0	0	15932	1058	37	4	198	4	TFPI2	7	93516687	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	654792	93516687	65621976	498	140924											
TFPI2	7980	broad.mit.edu	37	chr7	93518455	93518459	+	Frame_Shift_Del	DEL	TTAGA	-	-													tttttcacatgtcatggaacTtagattaaagaaatactttt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93518459	-	-	93518455	7	5	172	1	0	1	0	1	0	0	0	0	15932	1609	56	0	367	0	TFPI2	7	93518455	Frame_Shift_Del	DEL	TTAGA	TCGA-50-6594-01A-11D-1753-08	1768	93518455	65620208	499	140925											
DYNC1I1	1780	broad.mit.edu	37	chr7	95442627	95442627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctggaagccaagactcaGgcgatctggggccattaaca	12	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95442627	T	T	95442627	3	4	172	1	0	0	0	0	1	0	0	0	4882	1000	35	2	353	2	DYNC1I1	7	95442627	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1924172	95442627	63696036	500	140926											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97933593	97933593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcctgtcggcagctgccCccatggacaagcattccaag	9	16	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97933593	A	A	97933593	3	1	172	1	0	0	0	0	1	0	0	0	1307	623	22	2	210	2	BAIAP2L1	7	97933593	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2490966	97933593	61205070	501	140927											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97949370	97949370	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaaaccatgcacttacGttcatatatttcacgtcaag	7	9	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97949370	A	A	97949370	2	1	172	1	0	0	0	0	0	0	0	1	1307	1159	40	4		4	BAIAP2L1	7	97949370	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	15777	97949370	61189293	502	140928											
GATS	352954	broad.mit.edu	37	chr7	99799011	99799011	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatgggttgggggctgggGggctagattttaaggaccta	19	4	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99799011	A	A	99799011	1	1	172	0	1	0	0	0	0	0	0	0	6326	1247	43	4		4	GATS	7	99799011	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	1849641	99799011	59339652	503	140929											
MUC17	140453	broad.mit.edu	37	chr7	100675916	100675916	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaccatattggtggccAgttctgaggctagcaccact	10	12	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100675916	T	T	100675916	3	4	172	1	0	0	0	0	1	0	0	0	10068	188	7	5	1229	5	MUC17	7	100675916	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	876905	100675916	58462747	504	140930											
MUC17	140453	broad.mit.edu	37	chr7	100684439	100684439	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctttcaacaactcctgttGactccaacactcctttgacc	3	16	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100684439	T	T	100684439	3	4	172	1	0	0	0	0	1	0	0	0	10068	1290	45	3	9752	3	MUC17	7	100684439	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	8523	100684439	58454224	505	140931											
MUC17	140453	broad.mit.edu	37	chr7	100692276	100692276	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtctgggagagcaaggccCcatagctactcagttccccc	10	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100692276	G	G	100692276	1	3	172	0	1	0	0	0	0	0	0	0	10068	638	22	4		4	MUC17	7	100692276	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	7837	100692276	58446387	506	140932											
EMID2	136227	broad.mit.edu	37	chr7	101063285	101063285	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccatcacacagtgacacgGacggtgtcctgccaggtgca	12	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101063285	T	T	101063285	2	4	172	1	0	0	0	0	0	0	0	1	5134	1161	41	3		3	EMID2	7	101063285	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	371009	101063285	58075378	507	140933											
EMID2	136227	broad.mit.edu	37	chr7	101183184	101183184	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggcccaggtcctcctgcTagaagcagcagaacggccct	11	14	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101183184	G	G	101183184	3	3	172	1	0	0	0	0	1	0	0	0	5134	1522	53	5	470	5	EMID2	7	101183184	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	119899	101183184	57955479	508	140934											
PMPCB	9512	broad.mit.edu	37	chr7	102938970	102938970	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatttaatatcagattaGtaatgtgttttgctttgtct	6	5	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102938970	T	T	102938970	1	4	172	0	1	0	0	0	0	0	0	0	12236	1044	36	3		3	PMPCB	7	102938970	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1755786	102938970	56199693	509	140935											
RELN	5649	broad.mit.edu	37	chr7	103183200	103183200	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcatgtgataaatccaggtCtcgtgtcatcaacatgcgca	9	10	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103183200	T	T	103183200	3	4	172	1	0	0	0	0	1	0	0	0	13328	913	32	4	3825	4	RELN	7	103183200	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	244230	103183200	55955463	510	140936											
RELN	5649	broad.mit.edu	37	chr7	103322543	103322543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgctacatacacagcatGggagatagcaattacttacc	8	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103322543	T	T	103322543	1	4	172	0	1	0	0	0	0	0	0	0	13328	1363	47	2		2	RELN	7	103322543	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	139343	103322543	55816120	511	140937											
LAMB1	3912	broad.mit.edu	37	chr7	107600006	107600006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttataagcaccctgtcccCaattcagaatgctcatgggt	7	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107600006	A	A	107600006	1	1	172	0	1	0	0	0	0	0	0	0	8682	609	21	2		2	LAMB1	7	107600006	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4277463	107600006	51538657	512	140938											
DOCK4	9732	broad.mit.edu	37	chr7	111484739	111484739	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaaggccacattttccagAttataacatcaagccacctg	5	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111484739	T	T	111484739	1	4	172	0	1	0	0	0	0	0	0	0	4729	348	12	5		5	DOCK4	7	111484739	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3884733	111484739	47653924	513	140939											
DOCK4	9732	broad.mit.edu	37	chr7	111517025	111517025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtgtttactgaatatgCttaccaaaatatacatgatt	6	5	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111517025	A	A	111517025	1	1	172	0	1	0	0	0	0	0	0	0	4729	812	28	3		3	DOCK4	7	111517025	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	32286	111517025	47621638	514	140940											
IFRD1	3475	broad.mit.edu	37	chr7	112108010	112108010	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagaaaaataataataaagGaaacaaaattgcttttcttg	5	3	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112108010	A	A	112108010	1	1	172	0	1	0	0	0	0	0	0	0	7623	1189	41	4		4	IFRD1	7	112108010	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	590985	112108010	47030653	515	140941											
CTTNBP2	83992	broad.mit.edu	37	chr7	117359696	117359696	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattctctaaagacctaacAcaaagttcagaaaaacgttt	4	9	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117359696	T	T	117359696	1	4	172	0	1	0	0	0	0	0	0	0	4079	174	6	5		5	CTTNBP2	7	117359696	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	5251686	117359696	41778967	516	140942											
ING3	54556	broad.mit.edu	37	chr7	120608008	120608008	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtcgaaataataattccAcagcctcttctaacaatgcc	5	11	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120608008	G	G	120608008	3	3	172	1	0	0	0	0	1	0	0	0	7807	159	6	5	623	5	ING3	7	120608008	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	3248312	120608008	38530655	517	140943											
TAS2R16	50833	broad.mit.edu	37	chr7	122635640	122635640	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaataattgtcaaggactCaagcacatagatgatcatga	7	8	3	3	rs79856696	byFrequency;by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122635640	G	G	122635640	3	3	172	1	0	0	0	0	1	0	0	0	15688	835	29	4	830	4	TAS2R16	7	122635640	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2027632	122635640	36503023	518	140944											
GCC1	79571	broad.mit.edu	37	chr7	127223354	127223354	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacggagttgatcctctgCaagagctgtctgcaaaacaa	10	10	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127223354	T	T	127223354	3	4	172	1	0	0	0	0	1	0	0	0	6347	710	25	4	1289	4	GCC1	7	127223354	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4587714	127223354	31915309	519	140945											
SND1	27044	broad.mit.edu	37	chr7	127528055	127528055	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actacgatgaactgcttgctGcagaggccaggtaagaccaa	11	10	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127528055	A	A	127528055	3	1	172	1	0	0	0	0	1	0	0	0	14958	1319	46	4	1494	4	SND1	7	127528055	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	304701	127528055	31610608	520	140946											
OPN1SW	611	broad.mit.edu	37	chr7	128413825	128413825	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgaccatgtacatggCgaaggccgcgtagggcacgt	15	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128413825	T	T	128413825	3	4	172	1	0	0	0	0	1	0	0	0	10974	768	27	4	249	4	OPN1SW	7	128413825	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	885770	128413825	30724838	521	140947											
OPN1SW	611	broad.mit.edu	37	chr7	128413885	128413885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccatcacaaccaccatgcGgctcacctcccgttcagcct	5	19	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128413885	T	T	128413885	3	4	172	1	0	0	0	0	1	0	0	0	10974	1116	39	1	309	1	OPN1SW	7	128413885	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	60	128413885	30724778	522	140948											
EXOC4	60412	broad.mit.edu	37	chr7	133692564	133692564	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccaacatcaccatgtcgcGggaggcagacctggactttg	12	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133692564	A	A	133692564	3	1	172	1	0	0	0	0	1	0	0	0	5348	1116	39	4	2738	4	EXOC4	7	133692564	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	5278679	133692564	25446099	523	140949											
DGKI	9162	broad.mit.edu	37	chr7	137294433	137294433	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcagaaccaagtagaagaTgacggcagcgcatgctgttc	12	9	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137294433	G	G	137294433	1	3	172	0	1	0	0	0	0	0	0	0	4511	1479	51	5		5	DGKI	7	137294433	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	3601869	137294433	21844230	524	140950											
KIAA1549	57670	broad.mit.edu	37	chr7	138604108	138604108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaggccacttgtgcagcGctgtgcccagtgcttttctt	11	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138604108	T	T	138604108	3	4	172	1	0	0	0	0	1	0	0	0	8314	1078	38	3	5664	3	KIAA1549	7	138604108	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1309675	138604108	20534555	525	140951											
CLEC2L	154790	broad.mit.edu	37	chr7	139219202	139219202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcagctgcctggtttacCgagctgatacccagacatac	8	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139219202	A	A	139219202	1	1	172	0	1	0	0	0	0	0	0	0	3541	667	23	1		1	CLEC2L	7	139219202	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	615094	139219202	19919461	526	140952											
BRAF	673	broad.mit.edu	37	chr7	140481411	140481411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtagactgttccaaatgatCcagatccaattctttgtccc	6	11	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481411	A	A	140481411	3	1	172	1	0	0	0	0	1	0	0	0	1505	855	30	3	935	3	BRAF	7	140481411	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1262209	140481411	18657252	527	140953											
MGAM	8972	broad.mit.edu	37	chr7	141767034	141767034	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaacaaagcaaggatggctCaggggcagctgtatttccga	14	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141767034	T	T	141767034	1	4	172	0	1	0	0	0	0	0	0	0	9634	841	29	4		4	MGAM	7	141767034	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1285623	141767034	17371629	528	140954											
SSPO	23145	broad.mit.edu	37	chr7	149479975	149479975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggatgtgggcttgccctgGattggcgctgagggcctcag	17	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149479975	T	T	149479975	3	4	172	1	0	0	0	0	1	0	0	0	15307	1183	41	3	1997	3	SSPO	7	149479975	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	7712941	149479975	9658688	529	140955											
ABP1	26	broad.mit.edu	37	chr7	150556093	150556093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccatggccgaccaggtgCtgcccccaggctggcaggag	14	15	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150556093	A	A	150556093	3	1	172	1	0	0	0	0	1	0	0	0	98	796	28	3	1819	3	ABP1	7	150556093	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1076118	150556093	8582570	530	140956											
CRYGN	155051	broad.mit.edu	37	chr7	151135214	151135214	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagcagacccaggctccGctctccacgtggatggagtt	12	12	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151135214	C	C	151135214	3	2	172	1	0	0	0	0	1	0	0	0	3950	1078	38	4	422	4	CRYGN	7	151135214	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	579121	151135214	8003449	531	140957											
RHEB	6009	broad.mit.edu	37	chr7	151198983	151198983	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggtggacgaccccagtgCtgtggacaggaacgtggagt	17	8	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151198983	G	G	151198983	1	3	172	0	1	0	0	0	0	0	0	0	13437	812	28	4		4	RHEB	7	151198983	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	63769	151198983	7939680	532	140958											
MLL3	58508	broad.mit.edu	37	chr7	151962128	151962128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgaaaacttacttgcaGttctggcacactttgcactc	7	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151962128	T	T	151962128	3	4	172	1	0	0	0	0	1	0	0	0	9715	1020	36	3	13764	3	MLL3	7	151962128	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	763145	151962128	7176535	533	140959											
MLL3	58508	broad.mit.edu	37	chr7	151962241	151962241	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagtagtacaaaagaactGatctaagaggtctcccgggc	10	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151962241	T	T	151962241	3	4	172	1	0	0	0	0	1	0	0	0	9715	1299	45	3	13877	3	MLL3	7	151962241	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	113	151962241	7176422	534	140960											
UBE3C	9690	broad.mit.edu	37	chr7	156962929	156962929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaaacacagcaacgtatAtttacatcataagaattgtg	6	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156962929	G	G	156962929	1	3	172	0	1	0	0	0	0	0	0	0	17007	464	16	5		5	UBE3C	7	156962929	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	5000688	156962929	2175734	535	140961											
UBE3C	9690	broad.mit.edu	37	chr7	156974295	156974295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatctcgagttcctataGcaaaaattttgctagagaat	6	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156974295	T	T	156974295	3	4	172	1	0	0	0	0	1	0	0	0	17007	971	34	3	726	3	UBE3C	7	156974295	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	11366	156974295	2164368	536	140962											
PTPRN2	5799	broad.mit.edu	37	chr7	157387960	157387960	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagccacggtggcgggcagCggtccctgggtggcgatgta	18	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157387960	T	T	157387960	2	4	172	1	0	0	0	0	0	0	0	1	12916	755	27	4		4	PTPRN2	7	157387960	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	413665	157387960	1750703	537	140963											
ESYT2	57488	broad.mit.edu	37	chr7	158542440	158542440	+	Intron	DEL	C	-	-													caaaacaaacagaaaacagaCaaaataaataaacacatttt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158542440	-	-	158542440	6	5	172	0	1	1	0	1	0	0	0	0	5307	493	17	0		0	ESYT2	7	158542440	Intron	DEL	C	TCGA-50-6594-01A-11D-1753-08	1154480	158542440	596223	538	140964											
CSMD1	64478	broad.mit.edu	37	chr8	4494769	4494769	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaccggaaggaaccaactCcggacacaataataaaattt	6	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4494769	A	A	4494769	1	1	172	0	1	0	0	0	0	0	0	0	3978	870	30	3		3	CSMD1	8	4494769	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08		4494769	141869253	539	140965											
XKR5	389610	broad.mit.edu	37	chr8	6682573	6682573	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccagtgagctcaaggtgcCctaatgctcctaagcagagg	12	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6682573	T	T	6682573	1	4	172	0	1	0	0	0	0	0	0	0	17561	638	22	4		4	XKR5	8	6682573	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2187804	6682573	139681449	540	140966											
SGK223	157285	broad.mit.edu	37	chr8	8234236	8234236	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcggtgacactgggggcccTccagcagacggtgacaccgg	16	13	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8234236	A	A	8234236	2	1	172	1	0	0	0	0	0	0	0	1	14323	1538	54	5		5	SGK223	8	8234236	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	1551663	8234236	138129786	541	140967											
TNKS	8658	broad.mit.edu	37	chr8	9584131	9584131	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttggatatatatatgagttCtttccttccttttatgcaga	6	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9584131	G	G	9584131	1	3	172	0	1	0	0	0	0	0	0	0	16442	928	32	4		4	TNKS	8	9584131	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1349895	9584131	136779891	542	140968											
BLK	640	broad.mit.edu	37	chr8	11420536	11420536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggaagccatccacttcgGggtcttcaccatcaaagcag	9	15	3	0	rs149924770		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11420536	T	T	11420536	3	4	172	1	0	0	0	0	1	0	0	0	1450	1232	43	2	1271	2	BLK	8	11420536	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1836405	11420536	134943486	543	140969											
LPL	4023	broad.mit.edu	37	chr8	19809435	19809435	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaactggtgggacaggatgtGgcccggtttatcaactggat	14	7	1	0	rs1121923	byFrequency;by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19809435	C	C	19809435	2	2	172	1	0	0	0	0	0	0	0	1	9008	1335	47	4		4	LPL	8	19809435	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	8388899	19809435	126554587	544	140970											
C8orf41	80185	broad.mit.edu	37	chr8	33370971	33370971	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agtggcacatacttggcactCcttaatgtcaactataagat	7	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33370971	G	G	33370971	1	3	172	0	1	0	0	0	0	0	0	0	2453	870	30	4		4	C8orf41	8	33370971	5'Flank	SNP	C	TCGA-50-6594-01A-11D-1753-08	13561536	33370971	112993051	545	140971											
TM2D2	83877	broad.mit.edu	37	chr8	38851201	38851201	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggaataacaaccaagacCaaaaccaactcaccagagca	6	12	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38851201	A	A	38851201	1	1	172	0	1	0	0	0	0	0	0	0	16087	609	21	2		2	TM2D2	8	38851201	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	5480230	38851201	107512821	546	140972											
ADAM32	203102	broad.mit.edu	37	chr8	39027465	39027465	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcctcgttatttgggagcAgtgtttcctggaacaatgtg	11	7	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39027465	T	T	39027465	2	4	172	1	0	0	0	0	0	0	0	1	249	175	7	5		5	ADAM32	8	39027465	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	176264	39027465	107336557	547	140973											
POTEA	340441	broad.mit.edu	37	chr8	43152321	43152321	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgaggtagatttaagatAattaaaaaaatgagttttct	8	2	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43152321	G	G	43152321	1	3	172	0	1	0	0	0	0	0	0	0	12356	377	13	5		5	POTEA	8	43152321	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	4124856	43152321	103211701	548	140974											
MCM4	4173	broad.mit.edu	37	chr8	48874496	48874496	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagaatctcagccaccGcaggttgcaataaatattca	7	11	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48874496	C	C	48874496	1	2	172	0	1	0	0	0	0	0	0	0	9482	1102	38	4		4	MCM4	8	48874496	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5722175	48874496	97489526	549	140975											
EFCAB1	79645	broad.mit.edu	37	chr8	49644012	49644012	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgcctctctactcctcCcaccaagtcataaaaaagct	3	16	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49644012	A	A	49644012	4	1	172	1	0	0	0	0	0	1	0	0	4973	632	22	2	546	2	EFCAB1	8	49644012	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	769516	49644012	96720010	550	140976											
PXDNL	137902	broad.mit.edu	37	chr8	52233591	52233591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaacttcaaagcctaCataatttttcattttccccc	2	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52233591	A	A	52233591	1	1	172	0	1	0	0	0	0	0	0	0	12956	493	17	3		3	PXDNL	8	52233591	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2589579	52233591	94130431	551	140977											
PXDNL	137902	broad.mit.edu	37	chr8	52366224	52366224	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggatccatccagctccaaTccattgtccctggtccaagt	7	15	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52366224	A	A	52366224	2	1	172	1	0	0	0	0	0	0	0	1	12956	1422	50	5		5	PXDNL	8	52366224	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	132633	52366224	93997798	552	140978											
ST18	9705	broad.mit.edu	37	chr8	53084901	53084901	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcaatcttgtctcttccatCatcagaatgaatcagaaagc	5	10	6	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53084901	A	A	53084901	3	1	172	1	0	0	0	0	1	0	0	0	15330	826	29	3	2691	3	ST18	8	53084901	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	718677	53084901	93279121	553	140979											
RB1CC1	9821	broad.mit.edu	37	chr8	53573726	53573726	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagcagtacatctgaggaaCtgtactaagagcttcaacaa	8	8	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53573726	T	T	53573726	3	4	172	1	0	0	0	0	1	0	0	0	13207	565	20	4	3370	4	RB1CC1	8	53573726	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	488825	53573726	92790296	554	140980											
ATP6V1H	51606	broad.mit.edu	37	chr8	54714476	54714476	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgcacaagaagaagtgttGagtttttaaatgggaagcat	11	4	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54714476	A	A	54714476	1	1	172	0	1	0	0	0	0	0	0	0	1193	1305	45	4		4	ATP6V1H	8	54714476	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1140750	54714476	91649546	555	140981											
NKAIN3	286183	broad.mit.edu	37	chr8	63502281	63502281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctatctagtatacagtGtggactgccctctgggtcac	9	10	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63502281	T	T	63502281	2	4	172	1	0	0	0	0	0	0	0	1	10532	1364	48	3		3	NKAIN3	8	63502281	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	8787805	63502281	82861741	556	140982											
NKAIN3	286183	broad.mit.edu	37	chr8	63768166	63768166	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatgtcaggtccactgcTtgttcagtctccatcaaatc	8	12	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63768166	A	A	63768166	1	1	172	0	1	0	0	0	0	0	0	0	10532	1624	56	5		5	NKAIN3	8	63768166	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	265885	63768166	82595856	557	140983											
YTHDF3	253943	broad.mit.edu	37	chr8	64098882	64098882	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcactatataccagatggtGtatttagtcaacctggggca	9	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64098882	A	A	64098882	3	1	172	1	0	0	0	0	1	0	0	0	17627	1364	48	4	326	4	YTHDF3	8	64098882	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	330716	64098882	82265140	558	140984											
PREX2	80243	broad.mit.edu	37	chr8	68984685	68984685	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcttacctaccctcttgctTaatttttgttttttgtttgt	5	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68984685	A	A	68984685	1	1	172	0	1	0	0	0	0	0	0	0	12583	1769	61	5		5	PREX2	8	68984685	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	4885803	68984685	77379337	559	140985											
SULF1	23213	broad.mit.edu	37	chr8	70513913	70513913	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataacatgctcgtggagacgGgggagctggagaatacttac	14	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70513913	C	C	70513913	3	2	172	1	0	0	0	0	1	0	0	0	15488	1232	43	4	932	4	SULF1	8	70513913	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1529228	70513913	75850109	560	140986											
NCOA2	10499	broad.mit.edu	37	chr8	71185975	71185975	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcactgtccaaacaatcTgtgggtggaaaagcaccact	10	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71185975	C	C	71185975	1	2	172	0	1	0	0	0	0	0	0	0	10324	1595	55	5		5	NCOA2	8	71185975	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	672062	71185975	75178047	561	140987											
MSC	9242	broad.mit.edu	37	chr8	72754925	72754925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccacatagtctgttggCtgcggaaacttctttggtgt	12	8	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72754925	A	A	72754925	3	1	172	1	0	0	0	0	1	0	0	0	9962	797	28	3	32	3	MSC	8	72754925	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1568950	72754925	73609097	562	140988											
TRPA1	8989	broad.mit.edu	37	chr8	72987515	72987515	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgtcggaacccctccagacCcgcgagcccccagagtacct	9	19	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72987515	G	G	72987515	1	3	172	0	1	0	0	0	0	0	0	0	16702	638	22	4		4	TRPA1	8	72987515	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	232590	72987515	73376507	563	140989											
KCNB2	9312	broad.mit.edu	37	chr8	73849569	73849569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatccagagagaaaggacCtgctgccagggatggcacgc	13	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73849569	A	A	73849569	3	1	172	1	0	0	0	0	1	0	0	0	8083	681	24	2	1985	2	KCNB2	8	73849569	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	862054	73849569	72514453	564	140990											
TCEB1	6921	broad.mit.edu	37	chr8	74859150	74859150	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtaccacagaatgtggcTgtatttagagataagttctt	9	6	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74859150	A	A	74859150	1	1	172	0	1	0	0	0	0	0	0	0	15801	1595	55	5		5	TCEB1	8	74859150	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	1009581	74859150	71504872	565	140991											
ZFHX4	79776	broad.mit.edu	37	chr8	77616460	77616460	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctgacagggaaaacagctCcacagatgacaacctgaaaa	9	11	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77616460	G	G	77616460	3	3	172	1	0	0	0	0	1	0	0	0	17761	855	30	4	139	4	ZFHX4	8	77616460	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2757310	77616460	68747562	566	140992											
ZFHX4	79776	broad.mit.edu	37	chr8	77766151	77766163	+	Frame_Shift_Del	DEL	AAAAAGCAGTGTT	-	-													ttgacttgattacgcatcagAaaaagcagtgttacaaggat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77766163	-	-	77766151	7	5	172	1	0	1	0	1	0	0	0	0	17761	247	9	0	7028	0	ZFHX4	8	77766151	Frame_Shift_Del	DEL	AAAAAGCAGTGTT	TCGA-50-6594-01A-11D-1753-08	149691	77766151	68597871	567	140993											
ZFHX4	79776	broad.mit.edu	37	chr8	77776343	77776343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgaagcacttagccaaCacctccagtcaagcttgcac	8	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77776343	A	A	77776343	3	1	172	1	0	0	0	0	1	0	0	0	17761	478	17	3	10431	3	ZFHX4	8	77776343	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	10192	77776343	68587679	568	140994											
CNBD1	168975	broad.mit.edu	37	chr8	87878781	87878781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgacagctattaacaatGtgcctcctcctccacttcac	4	15	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87878781	A	A	87878781	3	1	172	1	0	0	0	0	1	0	0	0	3623	1377	48	4	60	4	CNBD1	8	87878781	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	10102438	87878781	58485241	569	140995											
VPS13B	157680	broad.mit.edu	37	chr8	100168776	100168776	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgaacactattattttctaGaactcaagtaacttcatgaa	5	8	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100168776	A	A	100168776	5	1	172	1	0	0	0	0	0	0	1	0	17317	956	33	4	2109	4	VPS13B	8	100168776	Splice_Site	SNP	G	TCGA-50-6594-01A-11D-1753-08	12289995	100168776	46195246	570	140996											
SNX31	169166	broad.mit.edu	37	chr8	101630056	101630056	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggctggagtgcaatggcgtGatcttggctcactgcaacct	13	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101630056	T	T	101630056	1	4	172	0	1	0	0	0	0	0	0	0	15015	1305	45	3		3	SNX31	8	101630056	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1461280	101630056	44733966	571	140997											
DCAF13	25879	broad.mit.edu	37	chr8	104433128	104433129	+	Intron	INS	-	T	T													cagtagagtgattcgtagccINSttgtcagtgttgaatttatc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104433129	T	T	104433128	6	5	172	0	1	1	1	0	0	0	0	0	4299	696	24	0		0	DCAF13	8	104433128	Intron	INS	-	TCGA-50-6594-01A-11D-1753-08	2803072	104433128	41930894	572	140998											
CSMD3	114788	broad.mit.edu	37	chr8	113236882	113236882	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctgtatcattcctcaGgaaaaggtgacccagcaagt	8	11	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113236882	T	T	113236882	1	4	172	0	1	0	0	0	0	0	0	0	3980	1015	35	2		2	CSMD3	8	113236882	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	8803754	113236882	33127140	573	140999											
CSMD3	114788	broad.mit.edu	37	chr8	113241000	113241000	+	Frame_Shift_Del	DEL	T	-	-													cttacctttgtttataaagaTaaaatccaaatcctgcaaat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113241000	-	-	113241000	7	5	172	1	0	1	0	1	0	0	0	0	3980	1406	49	0	182	0	CSMD3	8	113241000	Frame_Shift_Del	DEL	T	TCGA-50-6594-01A-11D-1753-08	4118	113241000	33123022	574	141000											
CSMD3	114788	broad.mit.edu	37	chr8	113326136	113326136	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttataagttttacataccTatatatcttatccggaagcc	5	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113326136	A	A	113326136	2	1	172	1	0	0	0	0	0	0	0	1	3980	1536	53	5		5	CSMD3	8	113326136	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	85136	113326136	33037886	575	141001											
TRPS1	7227	broad.mit.edu	37	chr8	116426509	116426509	+	Frame_Shift_Del	DEL	G	-	-													tctgtttttactacattcaaGggaccttcattttttacatt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116426509	-	-	116426509	7	5	172	1	0	1	0	1	0	0	0	0	16718	987	35	0	261	0	TRPS1	8	116426509	Frame_Shift_Del	DEL	G	TCGA-50-6594-01A-11D-1753-08	3100373	116426509	29937513	576	141002											
COL14A1	7373	broad.mit.edu	37	chr8	121295836	121295836	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaggagtaacttttttgagGaaggatacaatgaaacatgg	11	3	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121295836	A	A	121295836	1	1	172	0	1	0	0	0	0	0	0	0	3703	1189	41	4		4	COL14A1	8	121295836	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4869327	121295836	25068186	577	141003											
HAS2	3037	broad.mit.edu	37	chr8	122626456	122626456	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccaatagcatgcatagaGcaacgttccaacaattagaa	7	10	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122626456	A	A	122626456	3	1	172	1	0	0	0	0	1	0	0	0	7028	971	34	4	110	4	HAS2	8	122626456	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1330620	122626456	23737566	578	141004											
FER1L6	654463	broad.mit.edu	37	chr8	125033682	125033682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggaacagtccacgtgaGtgactcagtgtggagctcac	12	12	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125033682	T	T	125033682	1	4	172	0	1	0	0	0	0	0	0	0	5872	1044	36	3		3	FER1L6	8	125033682	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2407226	125033682	21330340	579	141005											
FER1L6	654463	broad.mit.edu	37	chr8	125047632	125047632	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaacttgccagtaggctatGaagcagaaatgtcctccaaa	8	10	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125047632	T	T	125047632	4	4	172	1	0	0	0	0	0	1	0	0	5872	1291	45	3	2471	3	FER1L6	8	125047632	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	13950	125047632	21316390	580	141006											
ADCY8	114	broad.mit.edu	37	chr8	131949232	131949232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttctgcctttcaccataCatatgatttaccacaaaggg	7	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131949232	A	A	131949232	1	1	172	0	1	0	0	0	0	0	0	0	300	493	17	3		3	ADCY8	8	131949232	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6901600	131949232	14414790	581	141007											
PHF20L1	51105	broad.mit.edu	37	chr8	133806689	133806689	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgaaaaaattgactatgaGgagggcaagatgttggtcca	12	4	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133806689	A	A	133806689	2	1	172	1	0	0	0	0	0	0	0	1	11927	991	35	4		4	PHF20L1	8	133806689	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1857457	133806689	12557333	582	141008											
TG	7038	broad.mit.edu	37	chr8	134030139	134030139	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatggaagcaagtggacCagttccttggagttccatat	10	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134030139	A	A	134030139	3	1	172	1	0	0	0	0	1	0	0	0	15936	595	21	2	6829	2	TG	8	134030139	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	223450	134030139	12333883	583	141009											
FAM135B	51059	broad.mit.edu	37	chr8	139151240	139151240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accactgacctgttttttggCttagttggtagaggaaacat	10	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139151240	A	A	139151240	3	1	172	1	0	0	0	0	1	0	0	0	5495	797	28	3	342	3	FAM135B	8	139151240	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	5121101	139151240	7212782	584	141010											
COL22A1	169044	broad.mit.edu	37	chr8	139629009	139629009	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatggtgcttcaaaggtgtCcctgtgctggcttgctccat	12	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139629009	A	A	139629009	1	1	172	0	1	0	0	0	0	0	0	0	3713	870	30	3		3	COL22A1	8	139629009	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	477769	139629009	6735013	585	141011											
CYP11B1	1584	broad.mit.edu	37	chr8	143957750	143957750	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagctccgccacgatgctGgtgtactgttgagggcggct	16	10	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143957750	T	T	143957750	2	4	172	1	0	0	0	0	0	0	0	1	4178	1335	47	2		2	CYP11B1	8	143957750	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	4328741	143957750	2406272	586	141012											
C9orf46	55848	broad.mit.edu	37	chr9	5431905	5431905	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttaaaacatacctgaagtcGagcattcataagcatgaact	6	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5431905	A	A	5431905	4	1	172	1	0	0	0	0	0	1	0	0	2510	1066	37	4	386	4	C9orf46	9	5431905	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08		5431905	135781526	587	141013											
GLDC	2731	broad.mit.edu	37	chr9	6532950	6532950	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctggggtgggagatgaaatCtttcttgcttatcaaatgct	12	6	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6532950	T	T	6532950	1	4	172	0	1	0	0	0	0	0	0	0	6497	928	32	4		4	GLDC	9	6532950	3'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	1101045	6532950	134680481	588	141014											
KDM4C	23081	broad.mit.edu	37	chr9	7049148	7049148	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttcgattcactaatgtccCagaaaggacacaaatagatg	8	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7049148	T	T	7049148	3	4	172	1	0	0	0	0	1	0	0	0	8200	594	21	4	2504	4	KDM4C	9	7049148	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	516198	7049148	134164283	589	141015											
PTPRD	5789	broad.mit.edu	37	chr9	8340348	8340349	+	Missense_Mutation	DNP	CC	AT	AT													gggccacacacttactctgcCcatttcacgcagcttggtga							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	8340349	AT	AT	8340348	3	1	172	1	0	0	0	0	1	0	0	0	12907	623	22	2	510	2	PTPRD	9	8340348	Missense_Mutation	DNP	CC	TCGA-50-6594-01A-11D-1753-08	1291200	8340348	132873083	590	141016											
FREM1	158326	broad.mit.edu	37	chr9	14788867	14788867	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacgaatgtggaatacttaTaccagttagcaaagttgatc	8	6	0	1	rs140362610	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14788867	C	C	14788867	1	2	172	0	1	0	0	0	0	0	0	0	6104	1421	49	5		5	FREM1	9	14788867	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	6448519	14788867	126424564	591	141017											
PLAA	9373	broad.mit.edu	37	chr9	26917217	26917217	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccaaagttctgaatttttCaaacagcacaatgcttgttt	5	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26917217	T	T	26917217	1	4	172	0	1	0	0	0	0	0	0	0	12106	841	29	4		4	PLAA	9	26917217	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	12128350	26917217	114296214	592	141018											
IFT74	80173	broad.mit.edu	37	chr9	26999580	26999580	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaatgtacctttgaaaAtatttttactattttgattg	5	4	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26999580	G	G	26999580	1	3	172	0	1	0	0	0	0	0	0	0	7633	116	4	5		5	IFT74	9	26999580	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	82363	26999580	114213851	593	141019											
NOL6	65083	broad.mit.edu	37	chr9	33468622	33468622	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctggggacccagccctaatGacaccctccctcagccgatt	8	17	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33468622	A	A	33468622	1	1	172	0	1	0	0	0	0	0	0	0	10620	1305	45	4		4	NOL6	9	33468622	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6469042	33468622	107744809	594	141020											
CNTFR	1271	broad.mit.edu	37	chr9	34552645	34552645	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctccaggacagcaaagccAggaggtaggggcgggagcaa	17	10	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34552645	T	T	34552645	1	4	172	0	1	0	0	0	0	0	0	0	3670	203	7	5		5	CNTFR	9	34552645	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1084023	34552645	106660786	595	141021											
RECK	8434	broad.mit.edu	37	chr9	36080721	36080721	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagcaggattccgatagGctctttcccatggtgtattt	10	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36080721	T	T	36080721	1	4	172	0	1	0	0	0	0	0	0	0	13308	1218	42	3		3	RECK	9	36080721	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1528076	36080721	105132710	596	141022											
CNTNAP3	79937	broad.mit.edu	37	chr9	39103845	39103845	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acacgtcagcagtgagttctCcgtggaaagcagggaaatga	13	8	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39103845	T	T	39103845	3	4	172	1	0	0	0	0	1	0	0	0	3680	855	30	4	1470	4	CNTNAP3	9	39103845	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3023124	39103845	102109586	597	141023											
CNTNAP3	79937	broad.mit.edu	37	chr9	39154376	39154376	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgacgaatatgatcctatgTtcccttatgattatgagaaa	7	7	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39154376	A	A	39154376	1	1	172	0	1	0	0	0	0	0	0	0	3680	1740	60	5		5	CNTNAP3	9	39154376	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	50531	39154376	102059055	598	141024											
PIP5K1B	8395	broad.mit.edu	37	chr9	71606220	71606221	+	Intron	DNP	GG	TT	TT													tccacttctggtttgtaaatGgatccaggccatggcttaca							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	71606221	TT	TT	71606220	1	4	172	0	1	0	0	0	0	0	0	0	12035	1363	47	2		2	PIP5K1B	9	71606220	Intron	DNP	GG	TCGA-50-6594-01A-11D-1753-08	32451844	71606220	69607211	599	141025											
TMEM2	23670	broad.mit.edu	37	chr9	74300878	74300878	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattagataaaagcagaacTccaaaaagaaaaaagtctag	6	5	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74300878	A	A	74300878	1	1	172	0	1	0	0	0	0	0	0	0	16244	1566	54	5		5	TMEM2	9	74300878	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	2694658	74300878	66912553	600	141026											
PRUNE2	158471	broad.mit.edu	37	chr9	79259674	79259674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctccgtgagaaatgactctCctgtagggctcgatgacctt	10	12	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79259674	A	A	79259674	3	1	172	1	0	0	0	0	1	0	0	0	12747	854	30	3	589	3	PRUNE2	9	79259674	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4958796	79259674	61953757	601	141027											
C9orf3	84909	broad.mit.edu	37	chr9	97522631	97522631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaggaatcagattgtacGtgaacttgtgactttgcctg	11	7	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97522631	T	T	97522631	3	4	172	1	0	0	0	0	1	0	0	0	2503	1145	40	3	568	3	C9orf3	9	97522631	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	18262957	97522631	43690800	602	141028											
ZNF510	22869	broad.mit.edu	37	chr9	99521205	99521205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgatttctggccaaaaGttttcccacatttattacac	6	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99521205	T	T	99521205	3	4	172	1	0	0	0	0	1	0	0	0	18081	1029	36	3	148	3	ZNF510	9	99521205	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1998574	99521205	41692226	603	141029											
CTSL2	1515	broad.mit.edu	37	chr9	99799652	99799652	+	Frame_Shift_Del	DEL	C	-	-													atttctggtttcgaaagcaaCccatcatctgcctgaattct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99799652	-	-	99799652	7	5	172	1	0	1	0	1	0	0	0	0	4073	507	18	0	746	0	CTSL2	9	99799652	Frame_Shift_Del	DEL	C	TCGA-50-6594-01A-11D-1753-08	278447	99799652	41413779	604	141030											
KIF12	113220	broad.mit.edu	37	chr9	116859806	116859806	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacagtccccaccgcctctTctgtcctttgatccaggctc	6	18	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116859806	A	A	116859806	1	1	172	0	1	0	0	0	0	0	0	0	8343	1798	62	5		5	KIF12	9	116859806	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	17060154	116859806	24353625	605	141031											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123206135	123206135	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaataaaaacactggggagGcaaaatgcaatttataagat	8	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123206135	A	A	123206135	1	1	172	0	1	0	0	0	0	0	0	0	3176	1218	42	4		4	CDK5RAP2	9	123206135	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6346329	123206135	18007296	606	141032											
CEP110	11064	broad.mit.edu	37	chr9	123920368	123920368	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggccaaaagagccgagcTggaaaagctgaaaagccagg	13	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123920368	C	C	123920368	3	2	172	1	0	0	0	0	1	0	0	0	3275	1580	55	5	4855	5	CEP110	9	123920368	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	714233	123920368	17293063	607	141033											
WDR34	89891	broad.mit.edu	37	chr9	131397359	131397359	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccagggcagtttccggGtgcccacgtaccttcttgag	13	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131397359	T	T	131397359	1	4	172	0	1	0	0	0	0	0	0	0	17415	1276	44	3		3	WDR34	9	131397359	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7476991	131397359	9816072	608	141034											
NTNG2	84628	broad.mit.edu	37	chr9	135102363	135102363	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccgcacccggtcctggCgggccggctcctacctgccg	12	18	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135102363	A	A	135102363	2	1	172	1	0	0	0	0	0	0	0	1	10800	759	27	3		3	NTNG2	9	135102363	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	3705004	135102363	6111068	609	141035											
TMEM8C	389827	broad.mit.edu	37	chr9	136384217	136384217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctacccccccacccccCagcccccaggaggcatcctg	8	23	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136384217	A	A	136384217	1	1	172	0	1	0	0	0	0	0	0	0	16339	609	21	2		2	TMEM8C	9	136384217	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1281854	136384217	4829214	610	141036											
VAV2	7410	broad.mit.edu	37	chr9	136650887	136650887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacctgggggctgccgccCtggaactcacatggccatct	14	14	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136650887	A	A	136650887	1	1	172	0	1	0	0	0	0	0	0	0	17259	696	24	2		2	VAV2	9	136650887	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	266670	136650887	4562544	611	141037											
MRPS2	51116	broad.mit.edu	37	chr9	138395820	138395820	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatgacgactctccgctGgctgtgcacctctactgcag	11	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138395820	T	T	138395820	2	4	172	1	0	0	0	0	0	0	0	1	9925	1335	47	2		2	MRPS2	9	138395820	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1744933	138395820	2817611	612	141038											
LCN8	138307	broad.mit.edu	37	chr9	139650836	139650836	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttcagggaacagcatgggGaacagtgcagggaacagcac	15	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139650836	A	A	139650836	1	1	172	0	1	0	0	0	0	0	0	0	8758	1189	41	4		4	LCN8	9	139650836	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1255016	139650836	1562595	613	141039											
PNPLA7	375775	broad.mit.edu	37	chr9	140441712	140441712	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacatcccaagacaccCacgctttcccccaacccccc	2	22	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140441712	G	G	140441712	1	3	172	0	1	0	0	0	0	0	0	0	12265	609	21	4		4	PNPLA7	9	140441712	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	790876	140441712	771719	614	141040											
TUBB8	347688	broad.mit.edu	37	chr10	93853	93853	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgtttatgatcctgtctGggtactcctcccggatctta	9	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93853	T	T	93853	3	4	172	1	0	0	0	0	1	0	0	0	16887	1348	47	2	859	2	TUBB8	10	93853	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08		93853	135440894	615	141041											
ITIH2	3698	broad.mit.edu	37	chr10	7759491	7759491	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaactactgagcagaacGgacggtccaggaaattctac	10	10	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7759491	A	A	7759491	1	1	172	0	1	0	0	0	0	0	0	0	7974	1131	39	4		4	ITIH2	10	7759491	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7665638	7759491	127775256	616	141042											
FAM188A	80013	broad.mit.edu	37	chr10	15883599	15883599	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagttccttctgctcttcctCtaaaaataaccaaagcataa	4	11	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15883599	A	A	15883599	5	1	172	1	0	0	0	0	0	0	1	0	5560	927	32	3	1150	3	FAM188A	10	15883599	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	8124108	15883599	119651148	617	141043											
ST8SIA6	338596	broad.mit.edu	37	chr10	17401499	17401500	+	Intron	INS	-	T	T													ttaaaatctcatattatttaINStgaaaaaaattacctaaaat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17401500	T	T	17401499	6	5	172	0	1	1	1	0	0	0	0	0	15354	464	16	0		0	ST8SIA6	10	17401499	Intron	INS	-	TCGA-50-6594-01A-11D-1753-08	1517900	17401499	118133248	618	141044											
KIAA1217	56243	broad.mit.edu	37	chr10	24810883	24810883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggccctcatcgtgctggGggtggcctgcggaggggtgc	20	12	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24810883	T	T	24810883	1	4	172	0	1	0	0	0	0	0	0	0	8286	1247	43	2		2	KIAA1217	10	24810883	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7409384	24810883	110723864	619	141045											
GPR158	57512	broad.mit.edu	37	chr10	25886911	25886911	+	Frame_Shift_Del	DEL	G	-	-													atggcacagccaaaggcactGccctcatcaggaagaacccc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25886911	-	-	25886911	7	5	172	1	0	1	0	1	0	0	0	0	6728	1319	46	0	2398	0	GPR158	10	25886911	Frame_Shift_Del	DEL	G	TCGA-50-6594-01A-11D-1753-08	1076028	25886911	109647836	620	141046											
GAD2	2572	broad.mit.edu	37	chr10	26569888	26569888	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctcagttgcgcatgccctGagcctgtcagggtggagtgc	15	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26569888	A	A	26569888	1	1	172	0	1	0	0	0	0	0	0	0	6240	1305	45	4		4	GAD2	10	26569888	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	682977	26569888	108964859	621	141047											
APBB1IP	54518	broad.mit.edu	37	chr10	26825315	26825315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatctttttgagttttccCgtagctctcttgaaggtaaa	8	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26825315	A	A	26825315	1	1	172	0	1	0	0	0	0	0	0	0	762	667	23	1		1	APBB1IP	10	26825315	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	255427	26825315	108709432	622	141048											
ALOX5	240	broad.mit.edu	37	chr10	45869880	45869880	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacttcgagcgtggcgcggtGagcgcgggcggggcacgggt	22	10	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45869880	T	T	45869880	1	4	172	0	1	0	0	0	0	0	0	0	540	1305	45	3		3	ALOX5	10	45869880	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	19044565	45869880	89664867	623	141049											
RBP3	5949	broad.mit.edu	37	chr10	48382057	48382057	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgccatccgaggcccccaCagaacgggccgtggggatag	15	14	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48382057	G	G	48382057	3	3	172	1	0	0	0	0	1	0	0	0	13265	478	17	4	155	4	RBP3	10	48382057	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2512177	48382057	87152690	624	141050											
GDF2	2658	broad.mit.edu	37	chr10	48413982	48413982	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcgtgactgctctcacCtgcctctgtggagccgtcct	9	17	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48413982	A	A	48413982	3	1	172	1	0	0	0	0	1	0	0	0	6378	681	24	2	407	2	GDF2	10	48413982	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	31925	48413982	87120765	625	141051											
PCDH15	65217	broad.mit.edu	37	chr10	55626444	55626444	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcccttcccatagtcgtcAgttgcaataacttgaaactt	6	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55626444	T	T	55626444	2	4	172	1	0	0	0	0	0	0	0	1	11605	175	7	5		5	PCDH15	10	55626444	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	7212462	55626444	79908303	626	141052											
MYPN	84665	broad.mit.edu	37	chr10	69881655	69881655	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtatttttaaataagGctgccgacttcattgaagag	8	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69881655	C	C	69881655	3	2	172	1	0	0	0	0	1	0	0	0	10192	1203	42	4	462	4	MYPN	10	69881655	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	14255211	69881655	65653092	627	141053											
SLC25A16	8034	broad.mit.edu	37	chr10	70259759	70259759	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaagctttgataaaaactcGaaataaaaaaaagaaaatac	4	5	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70259759	A	A	70259759	1	1	172	0	1	0	0	0	0	0	0	0	14592	1073	37	4		4	SLC25A16	10	70259759	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	378104	70259759	65274988	628	141054											
HKDC1	80201	broad.mit.edu	37	chr10	71007006	71007006	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttttattctataccatGgacctgcctattaattttca	3	8	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71007006	T	T	71007006	1	4	172	0	1	0	0	0	0	0	0	0	7260	1363	47	2		2	HKDC1	10	71007006	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	747247	71007006	64527741	629	141055											
DLG5	9231	broad.mit.edu	37	chr10	79555726	79555726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcactgaaggtctgagcCgctggggcagaggatcacgg	17	10	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79555726	A	A	79555726	1	1	172	0	1	0	0	0	0	0	0	0	4598	667	23	1		1	DLG5	10	79555726	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	8548720	79555726	55979021	630	141056											
LDB3	11155	broad.mit.edu	37	chr10	88451570	88451570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagaacgataggggccacCaatgggcatggagcagggac	16	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88451570	T	T	88451570	1	4	172	0	1	0	0	0	0	0	0	0	8769	609	21	4		4	LDB3	10	88451570	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	8895844	88451570	47083177	631	141057											
BMPR1A	657	broad.mit.edu	37	chr10	88683407	88683407	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcccacaatccagcctcCagactcacagcattgagaat	8	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88683407	T	T	88683407	2	4	172	1	0	0	0	0	0	0	0	1	1475	581	21	4		4	BMPR1A	10	88683407	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	231837	88683407	46851340	632	141058											
KIF20B	9585	broad.mit.edu	37	chr10	91479222	91479222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctcaagagaaattatttgGacctgtcaaatcttctcaag	6	9	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91479222	T	T	91479222	3	4	172	1	0	0	0	0	1	0	0	0	8357	1174	41	3	1527	3	KIF20B	10	91479222	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2795815	91479222	44055525	633	141059											
ANKRD1	27063	broad.mit.edu	37	chr10	92677489	92677489	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaagaaatatatttacCatatcacggaattcgatctg	6	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92677489	G	G	92677489	3	3	172	1	0	0	0	0	1	0	0	0	637	608	21	4	427	4	ANKRD1	10	92677489	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1198267	92677489	42857258	634	141060											
GPR120	338557	broad.mit.edu	37	chr10	95335703	95335703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggattgtggtgggcagtgGgagggattctggggttcact	20	4	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95335703	T	T	95335703	1	4	172	0	1	0	0	0	0	0	0	0	6701	1247	43	2		2	GPR120	10	95335703	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2658214	95335703	40199044	635	141061											
LGI1	9211	broad.mit.edu	37	chr10	95557398	95557398	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttactcaagtgtataactgGgatgcagagaaagccaaatt	9	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95557398	A	A	95557398	4	1	172	1	0	0	0	0	0	1	0	0	8823	1241	43	4	1542	4	LGI1	10	95557398	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	221695	95557398	39977349	636	141062											
DNTT	1791	broad.mit.edu	37	chr10	98084190	98084190	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttgctatgggctggtcGggtcgtggtggagctctaag	17	6	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98084190	T	T	98084190	1	4	172	0	1	0	0	0	0	0	0	0	4720	1131	39	1		1	DNTT	10	98084190	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2526792	98084190	37450557	637	141063											
PIK3AP1	118788	broad.mit.edu	37	chr10	98411062	98411062	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaggtgcagtccgcttgCagggatattgttcttcaggg	14	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98411062	T	T	98411062	3	4	172	1	0	0	0	0	1	0	0	0	12003	710	25	4	1534	4	PIK3AP1	10	98411062	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	326872	98411062	37123685	638	141064											
C10orf12	26148	broad.mit.edu	37	chr10	98743249	98743249	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagagtgatgccccatgcaGctctcttgggttgtcgagta	13	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98743249	A	A	98743249	3	1	172	1	0	0	0	0	1	0	0	0	1600	971	34	4	2104	4	C10orf12	10	98743249	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	332187	98743249	36791498	639	141065											
ABCC2	1244	broad.mit.edu	37	chr10	101596120	101596120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatattagcggtgggagGgcaggcatggctagtggtgt	18	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101596120	T	T	101596120	1	4	172	0	1	0	0	0	0	0	0	0	53	1247	43	2		2	ABCC2	10	101596120	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2852871	101596120	33938627	640	141066											
DNMBP	23268	broad.mit.edu	37	chr10	101639582	101639582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacctggttgccttctgCctcactgccatctggctctg	8	16	5	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101639582	A	A	101639582	3	1	172	1	0	0	0	0	1	0	0	0	4714	739	26	3	207	3	DNMBP	10	101639582	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	43462	101639582	33895165	641	141067											
LDB1	8861	broad.mit.edu	37	chr10	103869025	103869025	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcatgagcctgccctgatCccaattttgtagacccggga	11	12	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103869025	A	A	103869025	1	1	172	0	1	0	0	0	0	0	0	0	8767	870	30	3		3	LDB1	10	103869025	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2229443	103869025	31665722	642	141068											
ADRA2A	150	broad.mit.edu	37	chr10	112838132	112838132	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcgagatctacctggcGctcgacgtgctcttctgcac	12	13	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112838132	T	T	112838132	2	4	172	1	0	0	0	0	0	0	0	1	337	1074	38	3		3	ADRA2A	10	112838132	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	8969107	112838132	22696615	643	141069											
TCF7L2	6934	broad.mit.edu	37	chr10	114724519	114724519	+	Intron	SNP	A	G	G													tggtggtggtggtggtggtgAtggtggtggtggtggtgatg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114724519	G	G	114724519	1	3	172	0	1	0	0	0	0	0	0	0	15820	348	12	5		5	TCF7L2	10	114724519	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1886387	114724519	20810228	644	141070	605	2									
TCF7L2	6934	broad.mit.edu	37	chr10	114724522	114724522	+	Intron	SNP	G	A	A													tggtggtggtggtggtgatgGtggtggtggtggtgatggtg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114724522	A	A	114724522	1	1	172	0	1	0	0	0	0	0	0	0	15820	1276	44	4		4	TCF7L2	10	114724522	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3	114724522	20810225	645	141071	605	2									
NRAP	4892	broad.mit.edu	37	chr10	115405559	115405559	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagaggtgatgctcatgGgtgtgactcttcccccatac	10	10	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115405559	T	T	115405559	1	4	172	0	1	0	0	0	0	0	0	0	10733	1247	43	2		2	NRAP	10	115405559	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	681037	115405559	20129188	646	141072											
AFAP1L2	84632	broad.mit.edu	37	chr10	116070142	116070142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaagcgctgggcatccgGggtgtactggtttccttcag	14	9	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116070142	T	T	116070142	3	4	172	1	0	0	0	0	1	0	0	0	355	1232	43	2	1651	2	AFAP1L2	10	116070142	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	664583	116070142	19464605	647	141073											
SLC18A2	6571	broad.mit.edu	37	chr10	119017450	119017450	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagagcatttgtccccaGggcagcctttgtccccaggg	11	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119017450	T	T	119017450	1	4	172	0	1	0	0	0	0	0	0	0	14539	1015	35	2		2	SLC18A2	10	119017450	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2947308	119017450	16517297	648	141074											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122280680	122280680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctttgggaatttaggtGcagagaaaagcactggtaca	12	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122280680	T	T	122280680	1	4	172	0	1	0	0	0	0	0	0	0	12389	1334	46	3		3	PPAPDC1A	10	122280680	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3263230	122280680	13254067	649	141075											
GPR26	2849	broad.mit.edu	37	chr10	125426527	125426527	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctcaaggtggcccgcttcCattgcaagcgcatcgacgtg	12	13	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125426527	G	G	125426527	3	3	172	1	0	0	0	0	1	0	0	0	6749	594	21	4	606	4	GPR26	10	125426527	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3145847	125426527	10108220	650	141076											
DOCK1	1793	broad.mit.edu	37	chr10	128817119	128817119	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagaactggcttgttcaGggcttctcagcatggcatgg	14	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128817119	T	T	128817119	1	4	172	0	1	0	0	0	0	0	0	0	4724	1015	35	2		2	DOCK1	10	128817119	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3390592	128817119	6717628	651	141077											
KNDC1	85442	broad.mit.edu	37	chr10	135012623	135012623	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagagaggccgcggcccgcaGaccggaggctctgtctgccc	15	16	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135012623	A	A	135012623	3	1	172	1	0	0	0	0	1	0	0	0	8497	942	33	4	2665	4	KNDC1	10	135012623	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	6195504	135012623	522124	652	141078											
PTDSS2	81490	broad.mit.edu	37	chr11	474085	474085	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtcctcccctccgcctgGcccctccccgaggcctccga	8	24	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	474085	T	T	474085	1	4	172	0	1	0	0	0	0	0	0	0	12843	1218	42	3		3	PTDSS2	11	474085	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08		474085	134532431	653	141079											
OR51G2	81282	broad.mit.edu	37	chr11	4936940	4936940	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccctccaaaatcctgaAgtaaattgaggcagtactgg	11	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4936940	T	T	4936940	1	4	172	0	1	0	0	0	0	0	0	0	11193	87	3	5		5	OR51G2	11	4936940	5'Flank	SNP	A	TCGA-50-6594-01A-11D-1753-08	4462855	4936940	130069576	654	141080											
MMP26	56547	broad.mit.edu	37	chr11	5010946	5010946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaggagacacaaacacaGctcctgcaacaattccatcg	6	15	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5010946	T	T	5010946	3	4	172	1	0	0	0	0	1	0	0	0	9757	962	34	3	174	3	MMP26	11	5010946	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	74006	5010946	129995570	655	141081											
OR52L1	338751	broad.mit.edu	37	chr11	6007393	6007393	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgagagccacatgtgctAaacgccttaagtcgggcctc	10	11	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6007393	G	G	6007393	2	3	172	1	0	0	0	0	0	0	0	1	11219	359	13	5		5	OR52L1	11	6007393	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	996447	6007393	128999123	656	141082											
DCHS1	8642	broad.mit.edu	37	chr11	6655050	6655050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaaggtaaaaagtggggGgctgttgccagccaggatat	14	7	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6655050	T	T	6655050	3	4	172	1	0	0	0	0	1	0	0	0	4320	1232	43	2	7780	2	DCHS1	11	6655050	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	647657	6655050	128351466	657	141083											
SBF2	81846	broad.mit.edu	37	chr11	9980858	9980858	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccataggttttgtctgctCacatactacagttaagatgg	9	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9980858	G	G	9980858	1	3	172	0	1	0	0	0	0	0	0	0	13971	841	29	4		4	SBF2	11	9980858	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	3325808	9980858	125025658	658	141084											
CALCA	796	broad.mit.edu	37	chr11	14991586	14991586	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcttcgtcctcactgagcGtggccgggtctgctgggctg	16	13	2	1	rs147263808	byFrequency	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14991586	C	C	14991586	3	2	172	1	0	0	0	0	1	0	0	0	2601	1145	40	4	475	4	CALCA	11	14991586	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	5010728	14991586	120014930	659	141085											
NELL1	4745	broad.mit.edu	37	chr11	21581860	21581860	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgactgtcctcatgaaGgggggctgaagcacaatggc	15	9	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21581860	T	T	21581860	3	4	172	1	0	0	0	0	1	0	0	0	10428	1000	35	2	1978	2	NELL1	11	21581860	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	6590274	21581860	113424656	660	141086											
LUZP2	338645	broad.mit.edu	37	chr11	24759897	24759897	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttttgggctgggacattgTtactttctttttccaaaatc	8	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24759897	C	C	24759897	1	2	172	0	1	0	0	0	0	0	0	0	9174	1740	60	5		5	LUZP2	11	24759897	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	3178037	24759897	110246619	661	141087											
WT1	7490	broad.mit.edu	37	chr11	32413740	32413740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgtctgcatctgcctcaCccttagatttccccagtccc	5	17	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32413740	A	A	32413740	1	1	172	0	1	0	0	0	0	0	0	0	17535	522	18	3		3	WT1	11	32413740	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	7653843	32413740	102592776	662	141088											
WT1	7490	broad.mit.edu	37	chr11	32449979	32449979	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgtgggttaggaattcCtgggggagaggaggatagca	18	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32449979	G	G	32449979	1	3	172	0	1	0	0	0	0	0	0	0	17535	696	24	4		4	WT1	11	32449979	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	36239	32449979	102556537	663	141089											
CCDC73	493860	broad.mit.edu	37	chr11	32657241	32657241	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaacatacttaaattttaCctgaaactttttgtcttcct	2	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32657241	A	A	32657241	5	1	172	1	0	0	0	0	0	0	1	0	2874	521	18	3	2073	3	CCDC73	11	32657241	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	207262	32657241	102349275	664	141090											
EHF	26298	broad.mit.edu	37	chr11	34664191	34664191	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acagatcatgattctggaagGaggtggtgtaatgaatctca	12	5	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34664191	C	C	34664191	3	2	172	1	0	0	0	0	1	0	0	0	5021	1174	41	4	16	4	EHF	11	34664191	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2006950	34664191	100342325	665	141091											
PRR5L	79899	broad.mit.edu	37	chr11	36459085	36459085	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctgtcttctctcctggcCcttgcggcctgagggctcct	11	15	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36459085	T	T	36459085	1	4	172	0	1	0	0	0	0	0	0	0	12708	638	22	4		4	PRR5L	11	36459085	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1794894	36459085	98547431	666	141092											
HSD17B12	51144	broad.mit.edu	37	chr11	43755399	43755399	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actctgccttatataatgtgGatgctgggcacagagctgcg	12	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43755399	T	T	43755399	1	4	172	0	1	0	0	0	0	0	0	0	7448	1189	41	3		3	HSD17B12	11	43755399	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7296314	43755399	91251117	667	141093											
HSD17B12	51144	broad.mit.edu	37	chr11	43772331	43772331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaccttagatttgaaccGctggtattgttctgtctttt	7	8	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43772331	T	T	43772331	1	4	172	0	1	0	0	0	0	0	0	0	7448	1102	38	3		3	HSD17B12	11	43772331	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	16932	43772331	91234185	668	141094											
ACCS	84680	broad.mit.edu	37	chr11	44105108	44105108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctttgtcttctcagaccaGgtccaccggctttgcctggg	11	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44105108	T	T	44105108	3	4	172	1	0	0	0	0	1	0	0	0	133	991	35	2	1439	2	ACCS	11	44105108	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	332777	44105108	90901408	669	141095											
LRP4	4038	broad.mit.edu	37	chr11	46894955	46894955	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaacagcaatggcccgGggctcatccaggctattgtt	13	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46894955	T	T	46894955	2	4	172	1	0	0	0	0	0	0	0	1	9046	1219	43	2		2	LRP4	11	46894955	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2789847	46894955	88111561	670	141096											
MYBPC3	4607	broad.mit.edu	37	chr11	47356833	47356833	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccactcccactgcccactccTctgataggaatctccaggat	6	17	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47356833	A	A	47356833	1	1	172	0	1	0	0	0	0	0	0	0	10107	1566	54	5		5	MYBPC3	11	47356833	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	461878	47356833	87649683	671	141097											
OR4A5	81318	broad.mit.edu	37	chr11	51412190	51412190	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatggtagtggaatatgcaGcatctataaatgacaggcag	11	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51412190	C	C	51412190	3	2	172	1	0	0	0	0	1	0	0	0	11137	971	34	4	745	4	OR4A5	11	51412190	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	4055357	51412190	83594326	672	141098											
TRIM48	79097	broad.mit.edu	37	chr11	55033171	55033171	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accagaatcagccactggaaGgttagtcctgtaatacccta	8	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55033171	C	C	55033171	3	2	172	1	0	0	0	0	1	0	0	0	16648	1014	35	4	565	4	TRIM48	11	55033171	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3620981	55033171	79973345	673	141099											
OR4A16	81327	broad.mit.edu	37	chr11	55111208	55111208	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttattgaccactctgtctgtGacatgtacccattgttggaa	8	9	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55111208	T	T	55111208	3	4	172	1	0	0	0	0	1	0	0	0	11135	1290	45	3	534	3	OR4A16	11	55111208	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	78037	55111208	79895308	674	141100											
OR4C16	219428	broad.mit.edu	37	chr11	55340249	55340249	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtcatgctaatattctccTatgtcatcttcttgcattct	4	10	6	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55340249	A	A	55340249	3	1	172	1	0	0	0	0	1	0	0	0	11143	1522	53	5	648	5	OR4C16	11	55340249	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	229041	55340249	79666267	675	141101											
OR4P4	81300	broad.mit.edu	37	chr11	55406611	55406611	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttcatttacattagaccgGtcacaacattctcagaagat	6	9	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55406611	C	C	55406611	3	2	172	1	0	0	0	0	1	0	0	0	11174	1261	44	4	780	4	OR4P4	11	55406611	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	66362	55406611	79599905	676	141102											
OR5M11	219487	broad.mit.edu	37	chr11	56310300	56310300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatagacatagggaaatGtggccaagcagatgcaaact	11	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56310300	T	T	56310300	3	4	172	1	0	0	0	0	1	0	0	0	11268	1377	48	3	486	3	OR5M11	11	56310300	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	903689	56310300	78696216	677	141103											
OR6Q1	219952	broad.mit.edu	37	chr11	57799282	57799282	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctactctgttgtcacGcccatgctcaatcctctcat	5	15	6	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57799282	T	T	57799282	2	4	172	1	0	0	0	0	0	0	0	1	11302	1074	38	3		3	OR6Q1	11	57799282	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1488982	57799282	77207234	678	141104											
MS4A6A	64231	broad.mit.edu	37	chr11	59947340	59947340	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgggtaagcagagttcaaCagtgtagaagtcacttgggt	13	5	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59947340	A	A	59947340	2	1	172	1	0	0	0	0	0	0	0	1	9958	465	17	3		3	MS4A6A	11	59947340	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	2148058	59947340	75059176	679	141105											
MS4A14	84689	broad.mit.edu	37	chr11	60160345	60160345	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaaaaagtggcaaaaagaaGaatcaattattgttcatgag	8	4	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60160345	T	T	60160345	1	4	172	0	1	0	0	0	0	0	0	0	9952	957	33	3		3	MS4A14	11	60160345	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	213005	60160345	74846171	680	141106											
MS4A8B	83661	broad.mit.edu	37	chr11	60482705	60482705	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgctcaggagcaggaGtagttcctcggtgtccgagg	15	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60482705	A	A	60482705	1	1	172	0	1	0	0	0	0	0	0	0	9961	1044	36	4		4	MS4A8B	11	60482705	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	322360	60482705	74523811	681	141107											
ZP1	22917	broad.mit.edu	37	chr11	60640699	60640699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggcatccattttcccaCccccatcgcctgctcctatg	5	18	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60640699	A	A	60640699	3	1	172	1	0	0	0	0	1	0	0	0	18344	507	18	3	1203	3	ZP1	11	60640699	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	157994	60640699	74365817	682	141108											
SCGB2A1	4246	broad.mit.edu	37	chr11	61977750	61977750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaactctgcatactgcacCaaaatctttctgaacctcgg	7	12	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61977750	A	A	61977750	1	1	172	0	1	0	0	0	0	0	0	0	14011	609	21	2		2	SCGB2A1	11	61977750	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1337051	61977750	73028766	683	141109											
SCGB1D2	10647	broad.mit.edu	37	chr11	62010767	62010767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttgctgcagccaatgCcgagttctgcccagctcttg	9	13	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62010767	A	A	62010767	3	1	172	1	0	0	0	0	1	0	0	0	14009	739	26	3	68	3	SCGB1D2	11	62010767	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	33017	62010767	72995749	684	141110											
DHCR7	1717	broad.mit.edu	37	chr11	71146760	71146760	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaggcagcgcccatccgtGcggcggaacaggtccttctg	14	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71146760	A	A	71146760	2	1	172	1	0	0	0	0	0	0	0	1	4517	1306	46	4		4	DHCR7	11	71146760	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	9135993	71146760	63859756	685	141111											
KRTAP5-9	3846	broad.mit.edu	37	chr11	71260011	71260011	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgccagtgcagctgctgcaAgccctactgctcccagtgca	10	16	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71260011	T	T	71260011	3	4	172	1	0	0	0	0	1	0	0	0	8640	72	3	5	310	5	KRTAP5-9	11	71260011	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	113251	71260011	63746505	686	141112											
CLPB	81570	broad.mit.edu	37	chr11	72005147	72005147	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcgcggtcccagagcagCgtgatgttgtgcctttgctt	12	12	0	2	rs141458508	byFrequency	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72005147	A	A	72005147	2	1	172	1	0	0	0	0	0	0	0	1	3583	755	27	3		3	CLPB	11	72005147	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	745136	72005147	63001369	687	141113											
PDE2A	5138	broad.mit.edu	37	chr11	72293420	72293420	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaggaagttcttgatgCgcatttaacttaagcctctg	8	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72293420	T	T	72293420	1	4	172	0	1	0	0	0	0	0	0	0	11730	783	27	4		4	PDE2A	11	72293420	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	288273	72293420	62713096	688	141114											
PGM2L1	283209	broad.mit.edu	37	chr11	74049567	74049567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttatctttggttctgttCcacttgtccgaagggtagca	9	9	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74049567	A	A	74049567	3	1	172	1	0	0	0	0	1	0	0	0	11894	855	30	3	164	3	PGM2L1	11	74049567	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1756147	74049567	60956949	689	141115											
LRRC32	2615	broad.mit.edu	37	chr11	76372225	76372225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccgctccagcaggccgcTgtacaggctgttcccagaca	11	16	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76372225	A	A	76372225	3	1	172	1	0	0	0	0	1	0	0	0	9074	1580	55	5	1580	5	LRRC32	11	76372225	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	2322658	76372225	58634291	690	141116											
MYO7A	4647	broad.mit.edu	37	chr11	76867814	76867814	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggtcttggaggccacCcccattctggaaggtaggac	13	12	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76867814	T	T	76867814	2	4	172	1	0	0	0	0	0	0	0	1	10176	610	22	4		4	MYO7A	11	76867814	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	495589	76867814	58138702	691	141117											
DLG2	1740	broad.mit.edu	37	chr11	83501919	83501919	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acaatagctacttgatccttCcaaaggacacatcccctcat	4	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83501919	G	G	83501919	1	3	172	0	1	0	0	0	0	0	0	0	4595	870	30	4		4	DLG2	11	83501919	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6634105	83501919	51504597	692	141118											
DLG2	1740	broad.mit.edu	37	chr11	83502395	83502395	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcctttttaacgtatccatCaagcttttgctttttgatct	5	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83502395	G	G	83502395	1	3	172	0	1	0	0	0	0	0	0	0	4595	841	29	4		4	DLG2	11	83502395	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	476	83502395	51504121	693	141119											
FOLH1B	219595	broad.mit.edu	37	chr11	89395461	89395461	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgggtaattttcattaatGacagttttcaaatgttaggc	8	4	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89395461	C	C	89395461	1	2	172	0	1	0	0	0	0	0	0	0	6038	1305	45	4		4	FOLH1B	11	89395461	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	5893066	89395461	45611055	694	141120											
FAT3	120114	broad.mit.edu	37	chr11	92088025	92088025	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagagagtggtcagcagcTgttttcagttgtcactctta	12	8	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92088025	C	C	92088025	3	2	172	1	0	0	0	0	1	0	0	0	5748	1580	55	5	2749	5	FAT3	11	92088025	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	2692564	92088025	42918491	695	141121											
FAT3	120114	broad.mit.edu	37	chr11	92088206	92088206	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagtgcgctattctttggtCaatgactataatgggagatt	10	6	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92088206	G	G	92088206	2	3	172	1	0	0	0	0	0	0	0	1	5748	813	29	4		4	FAT3	11	92088206	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	181	92088206	42918310	696	141122											
C11orf54	28970	broad.mit.edu	37	chr11	93486822	93486822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttttaaggtggcttgtGtttttgttttttggtttttt	10	2	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93486822	T	T	93486822	1	4	172	0	1	0	0	0	0	0	0	0	1661	1392	48	3		3	C11orf54	11	93486822	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1398616	93486822	41519694	697	141123											
CNTN5	53942	broad.mit.edu	37	chr11	100141962	100141962	+	Frame_Shift_Del	DEL	C	-	-													cccatctcgaatgatccgcaCaaatgaagcaggtaaaaatt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100141962	-	-	100141962	7	5	172	1	0	1	0	1	0	0	0	0	3676	478	17	0	2365	0	CNTN5	11	100141962	Frame_Shift_Del	DEL	C	TCGA-50-6594-01A-11D-1753-08	6655140	100141962	34864554	698	141124											
ANGPTL5	253935	broad.mit.edu	37	chr11	101777879	101777879	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtaattttagttttaacatCacatgattcctcacagtctt	4	8	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101777879	G	G	101777879	3	3	172	1	0	0	0	0	1	0	0	0	617	826	29	4	998	4	ANGPTL5	11	101777879	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1635917	101777879	33228637	699	141125											
DDI1	414301	broad.mit.edu	37	chr11	103908338	103908338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttttgttgactcgggcgCccagatgaccattatgagcc	12	11	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103908338	A	A	103908338	3	1	172	1	0	0	0	0	1	0	0	0	4361	739	26	3	790	3	DDI1	11	103908338	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2130459	103908338	31098178	700	141126											
DDX10	1662	broad.mit.edu	37	chr11	108547737	108547737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatccctttgatttggaGgggcaaggttgagatgcagg	16	5	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108547737	T	T	108547737	1	4	172	0	1	0	0	0	0	0	0	0	4375	1015	35	2		2	DDX10	11	108547737	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4639399	108547737	26458779	701	141127											
NCAM1	4684	broad.mit.edu	37	chr11	113076759	113076759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgaacctgcctcttatctcTtctagtccgattcatagtcc	5	13	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113076759	A	A	113076759	1	1	172	0	1	0	0	0	0	0	0	0	10297	1624	56	5		5	NCAM1	11	113076759	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	4529022	113076759	21929757	702	141128											
PCSK7	9159	broad.mit.edu	37	chr11	117089187	117089187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgattacttaccattcCacaggacctccagggaacgg	10	12	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117089187	A	A	117089187	3	1	172	1	0	0	0	0	1	0	0	0	11699	595	21	2	852	2	PCSK7	11	117089187	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4012428	117089187	17917329	703	141129											
TECTA	7007	broad.mit.edu	37	chr11	120983879	120983879	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacggggacggcgagtggCggcgaccccctgacaggtct	16	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120983879	A	A	120983879	2	1	172	1	0	0	0	0	0	0	0	1	15869	755	27	3		3	TECTA	11	120983879	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	3894692	120983879	14022637	704	141130											
TECTA	7007	broad.mit.edu	37	chr11	120996407	120996407	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaacaagacagacggccctCtgtgggagtgtggcactgtc	13	11	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120996407	A	A	120996407	3	1	172	1	0	0	0	0	1	0	0	0	15869	912	32	3	1626	3	TECTA	11	120996407	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	12528	120996407	14010109	705	141131											
OR8D4	338662	broad.mit.edu	37	chr11	123777147	123777147	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcagagaagaatgggtgtAaaaaaccattccacagtgac	9	8	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123777147	T	T	123777147	2	4	172	1	0	0	0	0	0	0	0	1	11327	349	13	5		5	OR8D4	11	123777147	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	2780740	123777147	11229369	706	141132											
FEZ1	9638	broad.mit.edu	37	chr11	125351420	125351420	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctaaaccaggggccccGgagaggtacctcagtgtcag	13	13	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125351420	A	A	125351420	1	1	172	0	1	0	0	0	0	0	0	0	5880	1131	39	4		4	FEZ1	11	125351420	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1574273	125351420	9655096	707	141133											
VPS26B	112936	broad.mit.edu	37	chr11	134104877	134104877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagatcacccagtcgcagGccttcgactttgagtttacc	10	12	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134104877	T	T	134104877	3	4	172	1	0	0	0	0	1	0	0	0	17325	1203	42	3	316	3	VPS26B	11	134104877	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	8753457	134104877	901639	708	141134											
CACNA2D4	93589	broad.mit.edu	37	chr12	1995390	1995390	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggaaggcacatttaccGctatgatattaatgaagtca	8	7	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1995390	A	A	1995390	3	1	172	1	0	0	0	0	1	0	0	0	2577	1101	38	4	2545	4	CACNA2D4	12	1995390	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08		1995390	131856505	709	141135											
CCND2	894	broad.mit.edu	37	chr12	4397890	4397890	+	Intron	SNP	A	C	C													ggaggacatgcctgtagggcAcggggtcactcgcgccgctg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4397890	C	C	4397890	1	2	172	0	1	0	0	0	0	0	0	0	2947	174	6	5		5	CCND2	12	4397890	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2402500	4397890	129454005	710	141136	606	2									
CCND2	894	broad.mit.edu	37	chr12	4397892	4397892	+	Intron	SNP	G	C	C													aggacatgcctgtagggcacGgggtcactcgcgccgctgac							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4397892	C	C	4397892	1	2	172	0	1	0	0	0	0	0	0	0	2947	1131	39	4		4	CCND2	12	4397892	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2	4397892	129454003	711	141137	606	2									
VWF	7450	broad.mit.edu	37	chr12	6131343	6131343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactcccaggggtcacccCatcactcaaggagcatctct	8	16	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6131343	A	A	6131343	1	1	172	0	1	0	0	0	0	0	0	0	17373	609	21	2		2	VWF	12	6131343	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1733451	6131343	127720552	712	141138											
NCAPD2	9918	broad.mit.edu	37	chr12	6631034	6631034	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtcacaggacagactgtCtgtaaaaataaacccaatat	7	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6631034	G	G	6631034	2	3	172	1	0	0	0	0	0	0	0	1	10300	900	32	4		4	NCAPD2	12	6631034	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	499691	6631034	127220861	713	141139											
KLRD1	3824	broad.mit.edu	37	chr12	10466042	10466042	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcaacaattttactggAttggactctcttacagtgag	8	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10466042	T	T	10466042	3	4	172	1	0	0	0	0	1	0	0	0	8490	333	12	5	367	5	KLRD1	12	10466042	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	3835008	10466042	123385853	714	141140											
GYS2	2998	broad.mit.edu	37	chr12	21712497	21712497	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattccttgatatttggaaCaaaattaataagttatgatg	6	3	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21712497	A	A	21712497	1	1	172	0	1	0	0	0	0	0	0	0	6978	493	17	3		3	GYS2	12	21712497	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	11246455	21712497	112139398	715	141141											
OVCH1	341350	broad.mit.edu	37	chr12	29630602	29630602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctccttctcaacccccCagtctcacatgtccaaattc	3	18	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29630602	A	A	29630602	1	1	172	0	1	0	0	0	0	0	0	0	11417	609	21	2		2	OVCH1	12	29630602	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	7918105	29630602	104221293	716	141142											
DENND5B	160518	broad.mit.edu	37	chr12	31586069	31586069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcttgctgtgaggcacccCaggaaggtagaccacatacc	12	13	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31586069	A	A	31586069	1	1	172	0	1	0	0	0	0	0	0	0	4477	609	21	2		2	DENND5B	12	31586069	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1955467	31586069	102265826	717	141143											
CPNE8	144402	broad.mit.edu	37	chr12	39156000	39156000	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtttttgacaacttctgtCttgtgacaaattgtaaaact	7	6	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39156000	A	A	39156000	3	1	172	1	0	0	0	0	1	0	0	0	3850	912	32	3	1148	3	CPNE8	12	39156000	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	7569931	39156000	94695895	718	141144											
KIF21A	55605	broad.mit.edu	37	chr12	39709677	39709677	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttagaatttctaggaaGgcactttagaacatcaatga	8	6	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39709677	C	C	39709677	1	2	172	0	1	0	0	0	0	0	0	0	8358	1015	35	4		4	KIF21A	12	39709677	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	553677	39709677	94142218	719	141145											
LRRK2	120892	broad.mit.edu	37	chr12	40748355	40748355	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaaacgactgaattgtgtGcataattgttattgcatcag	8	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40748355	C	C	40748355	1	2	172	0	1	0	0	0	0	0	0	0	9120	1334	46	4		4	LRRK2	12	40748355	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1038678	40748355	93103540	720	141146											
CNTN1	1272	broad.mit.edu	37	chr12	41419119	41419119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccaagtgacatgattgaGgctttcaccaagaaagcacg	9	11	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41419119	T	T	41419119	3	4	172	1	0	0	0	0	1	0	0	0	3672	991	35	2	2769	2	CNTN1	12	41419119	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	670764	41419119	92432776	721	141147											
ADAMTS20	80070	broad.mit.edu	37	chr12	43886354	43886354	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgggaagggtgaacatcatCaaggtcattctgagtttgtt	13	5	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43886354	G	G	43886354	3	3	172	1	0	0	0	0	1	0	0	0	266	826	29	4	4837	4	ADAMTS20	12	43886354	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2467235	43886354	89965541	722	141148											
ANP32D	23519	broad.mit.edu	37	chr12	48866732	48866732	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctcatacatctaaatttAagtggcaacaaaattaaaga	4	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48866732	G	G	48866732	2	3	172	1	0	0	0	0	0	0	0	1	708	359	13	5		5	ANP32D	12	48866732	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	4980378	48866732	84985163	723	141149											
OR8S1	341568	broad.mit.edu	37	chr12	48919247	48919247	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatttcttgttttcacatcCatgttcttcagtggaccatt	5	10	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48919247	A	A	48919247	1	1	172	0	1	0	0	0	0	0	0	0	11340	609	21	2		2	OR8S1	12	48919247	5'Flank	SNP	C	TCGA-50-6594-01A-11D-1753-08	52515	48919247	84932648	724	141150											
CCNT1	904	broad.mit.edu	37	chr12	49110287	49110287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggccgaaggcctaggcCacaaggatacacgttaagac	11	12	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49110287	A	A	49110287	1	1	172	0	1	0	0	0	0	0	0	0	2964	609	21	2		2	CCNT1	12	49110287	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	191040	49110287	84741608	725	141151											
KRT82	3888	broad.mit.edu	37	chr12	52790834	52790834	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccccaggccccacaagatGgcatctcctagcctcttttc	7	17	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52790834	A	A	52790834	1	1	172	0	1	0	0	0	0	0	0	0	8567	1363	47	4		4	KRT82	12	52790834	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3680547	52790834	81061061	726	141152											
KRT72	140807	broad.mit.edu	37	chr12	52980816	52980816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccataaataatcaccccaaCcacctggaagtcacctctgt	4	16	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52980816	A	A	52980816	1	1	172	0	1	0	0	0	0	0	0	0	8556	522	18	3		3	KRT72	12	52980816	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	189982	52980816	80871079	727	141153											
WIBG	84305	broad.mit.edu	37	chr12	56295911	56295911	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcactggggagttgggctgtCtcttccagggacaccttatc	13	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56295911	G	G	56295911	3	3	172	1	0	0	0	0	1	0	0	0	17492	912	32	4	258	4	WIBG	12	56295911	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3315095	56295911	77555984	728	141154											
STAC3	246329	broad.mit.edu	37	chr12	57640563	57640563	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgggatctctgggagggacCtcgtggggaggtacagtgct	18	7	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57640563	G	G	57640563	1	3	172	0	1	0	0	0	0	0	0	0	15359	696	24	4		4	STAC3	12	57640563	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1344652	57640563	76211332	729	141155											
DPY19L2	283417	broad.mit.edu	37	chr12	64045440	64045440	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggccctacagagactgcgCggtgcattgagtccctgata	12	13	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64045440	T	T	64045440	1	4	172	0	1	0	0	0	0	0	0	0	4781	783	27	4		4	DPY19L2	12	64045440	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6404877	64045440	69806455	730	141156											
IL22	50616	broad.mit.edu	37	chr12	68642443	68642443	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtaactaacgcaggggttCatttggaatccacccatcat	8	10	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68642443	A	A	68642443	1	1	172	0	1	0	0	0	0	0	0	0	7742	841	29	3		3	IL22	12	68642443	3'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	4597003	68642443	65209452	731	141157											
PTPRB	5787	broad.mit.edu	37	chr12	70948943	70948943	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactcatgataacttaccatCagcctctctcaccaccactg	3	16	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70948943	T	T	70948943	3	4	172	1	0	0	0	0	1	0	0	0	12904	826	29	4	1567	4	PTPRB	12	70948943	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2306500	70948943	62902952	732	141158											
ZFC3H1	196441	broad.mit.edu	37	chr12	72051003	72051003	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatactttaaaagcaaatctTcaaaagtttcttccacacag	3	9	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72051003	A	A	72051003	3	1	172	1	0	0	0	0	1	0	0	0	17759	1783	62	5	5428	5	ZFC3H1	12	72051003	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	1102060	72051003	61800892	733	141159											
TRHDE	29953	broad.mit.edu	37	chr12	72680536	72680536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgagccaatctacaaGgctactttcaaaatcagcat	6	9	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72680536	T	T	72680536	3	4	172	1	0	0	0	0	1	0	0	0	16603	991	35	2	861	2	TRHDE	12	72680536	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	629533	72680536	61171359	734	141160											
NAV3	89795	broad.mit.edu	37	chr12	78582310	78582310	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcttgacaactagctctAtatccctgtgagttatgtat	6	8	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78582310	T	T	78582310	1	4	172	0	1	0	0	0	0	0	0	0	10279	464	16	5		5	NAV3	12	78582310	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	5901774	78582310	55269585	735	141161											
DCN	1634	broad.mit.edu	37	chr12	91550779	91550779	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgacaattccagtttccAcaagattttttttttttaat	5	6	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91550779	C	C	91550779	1	2	172	0	1	0	0	0	0	0	0	0	4330	174	6	5		5	DCN	12	91550779	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	12968469	91550779	42301116	736	141162											
C12orf63	374467	broad.mit.edu	37	chr12	97137342	97137342	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgacaaaccttcaggtagAaaggaaactttgttcgtatt	8	7	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97137342	T	T	97137342	1	4	172	0	1	0	0	0	0	0	0	0	1719	261	9	5		5	C12orf63	12	97137342	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	5586563	97137342	36714553	737	141163											
NR1H4	9971	broad.mit.edu	37	chr12	100955646	100955646	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaattgtattatgattGcaactttcccccacaggtat	5	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100955646	C	C	100955646	1	2	172	0	1	0	0	0	0	0	0	0	10714	1334	46	4		4	NR1H4	12	100955646	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3818304	100955646	32896249	738	141164											
IGF1	3479	broad.mit.edu	37	chr12	102813513	102813513	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatgttagggtgcaatctgCtttcttcagtcttccaccca	7	12	5	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102813513	T	T	102813513	1	4	172	0	1	0	0	0	0	0	0	0	7640	812	28	4		4	IGF1	12	102813513	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1857867	102813513	31038382	739	141165											
POLR3B	55703	broad.mit.edu	37	chr12	106804616	106804616	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttacaggttaaggaattcAatttccgagccaaatgtatc	7	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106804616	G	G	106804616	3	3	172	1	0	0	0	0	1	0	0	0	12324	130	5	5	1025	5	POLR3B	12	106804616	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	3991103	106804616	27047279	740	141166											
BTBD11	121551	broad.mit.edu	37	chr12	108008883	108008883	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catccgtccaccccgagaccCgccattggacggctctgact	9	18	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108008883	G	G	108008883	3	3	172	1	0	0	0	0	1	0	0	0	1548	652	23	4	2076	4	BTBD11	12	108008883	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1204267	108008883	25843012	741	141167											
PRDM4	11108	broad.mit.edu	37	chr12	108147786	108147786	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctttcaggtaacccacaCatcacccctcgatccccaat	3	17	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108147786	T	T	108147786	3	4	172	1	0	0	0	0	1	0	0	0	12565	478	17	4	2195	4	PRDM4	12	108147786	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	138903	108147786	25704109	742	141168											
UNG	7374	broad.mit.edu	37	chr12	109539648	109539648	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttatgtttgtttgaggcAgggtctgtgctgcttacatt	12	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109539648	T	T	109539648	1	4	172	0	1	0	0	0	0	0	0	0	17125	203	7	5		5	UNG	12	109539648	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1391862	109539648	24312247	743	141169											
ACACB	32	broad.mit.edu	37	chr12	109639376	109639376	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttttacgaaataggtgaTgaagatgatcatgaccctga	9	6	2	6			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109639376	C	C	109639376	3	2	172	1	0	0	0	0	1	0	0	0	107	1464	51	5	2853	5	ACACB	12	109639376	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	99728	109639376	24212519	744	141170											
ANAPC7	51434	broad.mit.edu	37	chr12	110824121	110824121	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccactgtcttcctgccccaaGaattacttaccttttatcag	4	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110824121	C	C	110824121	1	2	172	0	1	0	0	0	0	0	0	0	606	957	33	4		4	ANAPC7	12	110824121	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1184745	110824121	23027774	745	141171											
OAS2	4939	broad.mit.edu	37	chr12	113445542	113445542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagccaaaggggtctttGcccccaaagtatgccttgga	11	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113445542	T	T	113445542	3	4	172	1	0	0	0	0	1	0	0	0	10895	1310	46	3	1794	3	OAS2	12	113445542	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2621421	113445542	20406353	746	141172											
OAS2	4939	broad.mit.edu	37	chr12	113446823	113446823	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttattgctgaaagtattatAggatggaccccaaattctga	8	7	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113446823	G	G	113446823	1	3	172	0	1	0	0	0	0	0	0	0	10895	435	15	5		5	OAS2	12	113446823	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1281	113446823	20405072	747	141173											
DTX1	1840	broad.mit.edu	37	chr12	113534584	113534585	+	Missense_Mutation	DNP	CC	AG	AG													cactatcggcacgtccaacaCcacgggcgagtcggacaccg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	113534585	AG	AG	113534584	3	1	172	1	0	0	0	0	1	0	0	0	4833	507	18	3	1737	3	DTX1	12	113534584	Missense_Mutation	DNP	CC	TCGA-50-6594-01A-11D-1753-08	87761	113534584	20317311	748	141174											
RBM19	9904	broad.mit.edu	37	chr12	114384065	114384065	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggtatgaactaaacccatCaggagtcagaagacccaggt	10	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114384065	G	G	114384065	1	3	172	0	1	0	0	0	0	0	0	0	13229	841	29	4		4	RBM19	12	114384065	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	849481	114384065	19467830	749	141175											
NOS1	4842	broad.mit.edu	37	chr12	117693686	117693686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggatgctcaggcattGggtgtgcatgcatacactcg	14	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117693686	T	T	117693686	1	4	172	0	1	0	0	0	0	0	0	0	10636	1363	47	2		2	NOS1	12	117693686	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3309621	117693686	16158209	750	141176											
NOS1	4842	broad.mit.edu	37	chr12	117698478	117698478	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagaagatgctggattGggactttcgtgcaagaacca	15	6	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117698478	T	T	117698478	1	4	172	0	1	0	0	0	0	0	0	0	10636	1363	47	2		2	NOS1	12	117698478	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4792	117698478	16153417	751	141177											
CCDC60	160777	broad.mit.edu	37	chr12	119942925	119942925	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaaccgcaaaccaagcCggcgaggctccacactcagt	8	17	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119942925	A	A	119942925	2	1	172	1	0	0	0	0	0	0	0	1	2859	643	23	1		1	CCDC60	12	119942925	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	2244447	119942925	13908970	752	141178											
CCDC60	160777	broad.mit.edu	37	chr12	119960659	119960659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgcctgaatcctggaagCtagcaggtgccatggagcac	12	12	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119960659	A	A	119960659	1	1	172	0	1	0	0	0	0	0	0	0	2859	812	28	3		3	CCDC60	12	119960659	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	17734	119960659	13891236	753	141179											
GCN1L1	10985	broad.mit.edu	37	chr12	120599747	120599747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataatggcaaactcctccCgcgtcaccaggcgcagtgca	10	15	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120599747	A	A	120599747	3	1	172	1	0	0	0	0	1	0	0	0	6361	652	23	1	5888	1	GCN1L1	12	120599747	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	639088	120599747	13252148	754	141180											
COQ5	84274	broad.mit.edu	37	chr12	120960561	120960561	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttggccttggcctttgacCgacatagcttgagccccttg	10	13	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120960561	T	T	120960561	1	4	172	0	1	0	0	0	0	0	0	0	3780	667	23	4		4	COQ5	12	120960561	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	360814	120960561	12891334	755	141181											
MLEC	9761	broad.mit.edu	37	chr12	121132798	121132798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaactctacattgagtttGtcaaggtaattcccctattc	7	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121132798	T	T	121132798	3	4	172	1	0	0	0	0	1	0	0	0	9706	1377	48	3	596	3	MLEC	12	121132798	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	172237	121132798	12719097	756	141182											
ANAPC5	51433	broad.mit.edu	37	chr12	121746298	121746298	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctctctagagatggtttatCaagggtaccccatgagaggg	12	9	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121746298	G	G	121746298	3	3	172	1	0	0	0	0	1	0	0	0	605	825	29	4	18	4	ANAPC5	12	121746298	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	613500	121746298	12105597	757	141183											
VPS33A	65082	broad.mit.edu	37	chr12	122724487	122724487	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatttatcaaaaaagtcttCagaagctaaaatgaaattag	5	4	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122724487	T	T	122724487	3	4	172	1	0	0	0	0	1	0	0	0	17328	835	29	4	708	4	VPS33A	12	122724487	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	978189	122724487	11127408	758	141184											
KNTC1	9735	broad.mit.edu	37	chr12	123054448	123054448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattgagaattaagtcacGttaacaccagttaacaccag	6	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123054448	T	T	123054448	1	4	172	0	1	0	0	0	0	0	0	0	8499	1160	40	3		3	KNTC1	12	123054448	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	329961	123054448	10797447	759	141185											
SLC15A4	121260	broad.mit.edu	37	chr12	129285335	129285335	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatattccaacagcacagtCagaatgcccgagcgctcacg	8	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129285335	A	A	129285335	1	1	172	0	1	0	0	0	0	0	0	0	14514	841	29	3		3	SLC15A4	12	129285335	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6230887	129285335	4566560	760	141186											
GLT1D1	144423	broad.mit.edu	37	chr12	129442128	129442128	+	Frame_Shift_Del	DEL	C	-	-													ccggtattggccaggaacatCcccgggaatgctgccgtggt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129442128	-	-	129442128	7	5	172	1	0	1	0	1	0	0	0	0	6529	845	30	0	605	0	GLT1D1	12	129442128	Frame_Shift_Del	DEL	C	TCGA-50-6594-01A-11D-1753-08	156793	129442128	4409767	761	141187											
TMEM132D	121256	broad.mit.edu	37	chr12	129563213	129563213	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctgtgatggtcaccttctCgtccagcacagtgatggtct	11	11	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129563213	A	A	129563213	4	1	172	1	0	0	0	0	0	1	0	0	16170	893	31	3	1326	3	TMEM132D	12	129563213	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	121085	129563213	4288682	762	141188											
TMEM132D	121256	broad.mit.edu	37	chr12	130184388	130184388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatcttcagtggaatttctgGagatggaaacaggaaaagtc	12	5	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130184388	T	T	130184388	3	4	172	1	0	0	0	0	1	0	0	0	16170	1174	41	3	2396	3	TMEM132D	12	130184388	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	621175	130184388	3667507	763	141189											
GPR133	283383	broad.mit.edu	37	chr12	131621617	131621617	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttttcctttccgaaaGgtcacaggagcaggaacagc	11	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131621617	T	T	131621617	1	4	172	0	1	0	0	0	0	0	0	0	6708	1015	35	2		2	GPR133	12	131621617	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1437229	131621617	2230278	764	141190											
RNF17	56163	broad.mit.edu	37	chr13	25404638	25404638	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggattgcctggacatcaGgaagttgaagttaaatatgt	11	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25404638	A	A	25404638	2	1	172	1	0	0	0	0	0	0	0	1	13572	991	35	4		4	RNF17	13	25404638	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08		25404638	89765240	765	141191											
ATP8A2	51761	broad.mit.edu	37	chr13	26273380	26273380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcaaggaaaatgacgtgGccctgatcatcgatggccac	13	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26273380	T	T	26273380	3	4	172	1	0	0	0	0	1	0	0	0	1197	1203	42	3	2379	3	ATP8A2	13	26273380	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	868742	26273380	88896498	766	141192											
CDX2	1045	broad.mit.edu	37	chr13	28538932	28538932	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacagatttagatggccccTgcagccagattttctaactc	7	13	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28538932	A	A	28538932	1	1	172	0	1	0	0	0	0	0	0	0	3213	1595	55	5		5	CDX2	13	28538932	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	2265552	28538932	86630946	767	141193											
FLT1	2321	broad.mit.edu	37	chr13	29008057	29008057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagtaatttgactgggcGtggtgtgcttatttggacat	12	5	1	1	rs139202898		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29008057	T	T	29008057	3	4	172	1	0	0	0	0	1	0	0	0	5999	1145	40	3	3667	3	FLT1	13	29008057	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	469125	29008057	86161821	768	141194											
RXFP2	122042	broad.mit.edu	37	chr13	32336009	32336009	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgcacagatttatatGggtaatgtgacaaattccct	9	6	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32336009	T	T	32336009	1	4	172	0	1	0	0	0	0	0	0	0	13871	1363	47	2		2	RXFP2	13	32336009	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3327952	32336009	82833869	769	141195											
RXFP2	122042	broad.mit.edu	37	chr13	32355909	32355910	+	Intron	DNP	GG	TT	TT													caatggacttcactaaatgaGgggaaaccctatatatttgg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32355910	TT	TT	32355909	1	4	172	0	1	0	0	0	0	0	0	0	13871	1015	35	2		2	RXFP2	13	32355909	Intron	DNP	GG	TCGA-50-6594-01A-11D-1753-08	19900	32355909	82813969	770	141196											
DCLK1	9201	broad.mit.edu	37	chr13	36521632	36521632	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcactcagcaagggtggtaGaacagcaattacaacaatgc	11	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36521632	T	T	36521632	1	4	172	0	1	0	0	0	0	0	0	0	4324	957	33	3		3	DCLK1	13	36521632	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4165723	36521632	78648246	771	141197											
POSTN	10631	broad.mit.edu	37	chr13	38144090	38144090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaactctgatacttcaGtgtgaaagcagccttaggta	9	8	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38144090	T	T	38144090	1	4	172	0	1	0	0	0	0	0	0	0	12354	1044	36	3		3	POSTN	13	38144090	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1622458	38144090	77025788	772	141198											
KIAA0564	23078	broad.mit.edu	37	chr13	42465423	42465423	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaagctgtaaattcatgacTctagcaatttacccaagata	5	8	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42465423	A	A	42465423	1	1	172	0	1	0	0	0	0	0	0	0	8255	1566	54	5		5	KIAA0564	13	42465423	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	4321333	42465423	72704455	773	141199											
DGKH	160851	broad.mit.edu	37	chr13	42793811	42793811	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaaattattttcttgctcGatttgaacaggaacctccta	5	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42793811	T	T	42793811	1	4	172	0	1	0	0	0	0	0	0	0	4510	1073	37	3		3	DGKH	13	42793811	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	328388	42793811	72376067	774	141200											
NUFIP1	26747	broad.mit.edu	37	chr13	45517710	45517711	+	Frame_Shift_Ins	INS	-	T	T													cttggcttctgaaaaatttcINStaacagttgctttaacatct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45517711	T	T	45517710	7	5	172	1	0	1	1	0	0	0	0	0	10843	913	32	0	257	0	NUFIP1	13	45517710	Frame_Shift_Ins	INS	-	TCGA-50-6594-01A-11D-1753-08	2723899	45517710	69652168	775	141201											
HNRNPA1L2	144983	broad.mit.edu	37	chr13	53217101	53217102	+	Frame_Shift_Ins	INS	-	A	A													cctttgacgaccatgactccINSgtggataagattgtcattca							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53217102	A	A	53217101	7	5	172	1	0	1	1	0	0	0	0	0	7325	639	23	0	476	0	HNRNPA1L2	13	53217101	Frame_Shift_Ins	INS	-	TCGA-50-6594-01A-11D-1753-08	7699391	53217101	61952777	776	141202											
PCDH17	27253	broad.mit.edu	37	chr13	58240775	58240775	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacaacactttctcttcttTttctttatatgtatttcagt	3	8	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58240775	C	C	58240775	1	2	172	0	1	0	0	0	0	0	0	0	11606	1856	64	5		5	PCDH17	13	58240775	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	5023674	58240775	56929103	777	141203											
KLHL1	57626	broad.mit.edu	37	chr13	70681523	70681523	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccaggagccccttgctgCagcctcgtggcaactggaag	13	14	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70681523	A	A	70681523	2	1	172	1	0	0	0	0	0	0	0	1	8436	697	25	3		3	KLHL1	13	70681523	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	12440748	70681523	44488355	778	141204											
LMO7	4008	broad.mit.edu	37	chr13	76427584	76427584	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtattttttcattaaaataTcccccaaatcctgtccaagt	4	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76427584	C	C	76427584	1	2	172	0	1	0	0	0	0	0	0	0	8929	1450	50	5		5	LMO7	13	76427584	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	5746061	76427584	38742294	779	141205											
EDNRB	1910	broad.mit.edu	37	chr13	78492704	78492704	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcacagacttggaggcggcTgcatgctgctacctgctcca	12	14	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78492704	A	A	78492704	3	1	172	1	0	0	0	0	1	0	0	0	4960	1580	55	5	1472	5	EDNRB	13	78492704	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	2065120	78492704	36677174	780	141206											
STK24	8428	broad.mit.edu	37	chr13	99171847	99171847	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggactcatctattttctGtgtccagcatcaggctggtg	11	10	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99171847	A	A	99171847	1	1	172	0	1	0	0	0	0	0	0	0	15411	1392	48	4		4	STK24	13	99171847	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	20679143	99171847	15998031	781	141207											
ZIC2	7546	broad.mit.edu	37	chr13	100637985	100637985	+	3'UTR	DEL	C	-	-													tccccaccccagcgcagcagCcctccccgcagctagcagcg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100637985	-	-	100637985	6	5	172	0	1	1	0	1	0	0	0	0	17805	754	26	0		0	ZIC2	13	100637985	3'UTR	DEL	C	TCGA-50-6594-01A-11D-1753-08	1466138	100637985	14531893	782	141208											
NALCN	259232	broad.mit.edu	37	chr13	101833607	101833607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagagtctggcttccagGcagagggtttggaggctgga	18	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101833607	T	T	101833607	1	4	172	0	1	0	0	0	0	0	0	0	10242	1218	42	3		3	NALCN	13	101833607	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1195622	101833607	13336271	783	141209											
F10	2159	broad.mit.edu	37	chr13	113803753	113803753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcctcaagtggatcgaCaggtccatgaaaaccagggg	12	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113803753	A	A	113803753	3	1	172	1	0	0	0	0	1	0	0	0	5379	477	17	3	1419	3	F10	13	113803753	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	11970146	113803753	1366125	784	141210											
TEP1	7011	broad.mit.edu	37	chr14	20871902	20871902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagagcggggtggccggcGggggtgtctcttggcccggt	22	9	1	1	rs141943004		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20871902	A	A	20871902	3	1	172	1	0	0	0	0	1	0	0	0	15881	1116	39	4	6909	4	TEP1	14	20871902	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08		20871902	86477638	785	141211											
MYH6	4624	broad.mit.edu	37	chr14	23866799	23866799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgagccctttttcttgcCtcctttgcttttaccactgt	7	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23866799	A	A	23866799	3	1	172	1	0	0	0	0	1	0	0	0	10132	681	24	2	4000	2	MYH6	14	23866799	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2994897	23866799	83482741	786	141212											
ADCY4	196883	broad.mit.edu	37	chr14	24793471	24793471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaggacaggttgtgacCagggctccggcataccactt	11	12	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24793471	A	A	24793471	1	1	172	0	1	0	0	0	0	0	0	0	296	609	21	2		2	ADCY4	14	24793471	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	926672	24793471	82556069	787	141213											
ADCY4	196883	broad.mit.edu	37	chr14	24795478	24795478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcatccagacagccccaCtggcaaagactttgaggcct	11	13	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24795478	A	A	24795478	1	1	172	0	1	0	0	0	0	0	0	0	296	580	20	3		3	ADCY4	14	24795478	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2007	24795478	82554062	788	141214											
NYNRIN	57523	broad.mit.edu	37	chr14	24884537	24884537	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatacctcaaaacccctcctCcctgatgaggagagccaggg	9	14	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24884537	A	A	24884537	2	1	172	1	0	0	0	0	0	0	0	1	10891	842	30	3		3	NYNRIN	14	24884537	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	89059	24884537	82465003	789	141215											
STXBP6	29091	broad.mit.edu	37	chr14	25288228	25288228	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagagctgagaagcctgctCctctcttggcccaccttgtg	10	15	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25288228	A	A	25288228	1	1	172	0	1	0	0	0	0	0	0	0	15476	870	30	3		3	STXBP6	14	25288228	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	403691	25288228	82061312	790	141216											
NOVA1	4857	broad.mit.edu	37	chr14	26918160	26918160	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtgctgttgggaactaTaatctttacctgtaattaaa	8	6	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26918160	A	A	26918160	3	1	172	1	0	0	0	0	1	0	0	0	10649	1406	49	5	998	5	NOVA1	14	26918160	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	1629932	26918160	80431380	791	141217											
PRKD1	5587	broad.mit.edu	37	chr14	30133012	30133012	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttctccgcctcacaccgcTgcaattgttgggtattttaa	7	13	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30133012	A	A	30133012	3	1	172	1	0	0	0	0	1	0	0	0	12624	1580	55	5	2209	5	PRKD1	14	30133012	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	3214852	30133012	77216528	792	141218											
RALGAPA1	253959	broad.mit.edu	37	chr14	36230167	36230167	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgctacagttattctgaaGagcttgcaaccatagtaaga	8	7	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36230167	A	A	36230167	3	1	172	1	0	0	0	0	1	0	0	0	13121	942	33	4	5988	4	RALGAPA1	14	36230167	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	6097155	36230167	71119373	793	141219											
C14orf106	55320	broad.mit.edu	37	chr14	45711277	45711277	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtaacagtttgaaatattCttggaggagaaagctttgaa	10	3	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45711277	G	G	45711277	3	3	172	1	0	0	0	0	1	0	0	0	1751	913	32	4	2351	4	C14orf106	14	45711277	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	9481110	45711277	61638263	794	141220											
RPL10L	140801	broad.mit.edu	37	chr14	47121002	47121002	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttaactacgcctgcgCgcatttatatacgttgcccc	6	15	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47121002	T	T	47121002	1	4	172	0	1	0	0	0	0	0	0	0	13667	783	27	4		4	RPL10L	14	47121002	5'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	1409725	47121002	60228538	795	141221											
MDGA2	161357	broad.mit.edu	37	chr14	47530668	47530668	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaccaactaaatgttagctCctcagaaggaacagcttcta	6	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47530668	A	A	47530668	4	1	172	1	0	0	0	0	0	1	0	0	9500	864	30	3	1812	3	MDGA2	14	47530668	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	409666	47530668	59818872	796	141222											
SDCCAG1	9147	broad.mit.edu	37	chr14	50052625	50052625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaataacccccacaacCttctctgcccaaacaacatg	3	15	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50052625	A	A	50052625	1	1	172	0	1	0	0	0	0	0	0	0	14070	696	24	2		2	SDCCAG1	14	50052625	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2521957	50052625	57296915	797	141223											
MAX	4149	broad.mit.edu	37	chr14	65544631	65544631	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacgagctcgggtgctcacCttgctgctccagaagagcat	11	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65544631	T	T	65544631	3	4	172	1	0	0	0	0	1	0	0	0	9431	695	24	4	411	4	MAX	14	65544631	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	15492006	65544631	41804909	798	141224											
PAPLN	89932	broad.mit.edu	37	chr14	73733266	73733266	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagtggctgtagaagatggCggcttctacacctgtgtcgc	14	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73733266	G	G	73733266	2	3	172	1	0	0	0	0	0	0	0	1	11522	755	27	4		4	PAPLN	14	73733266	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	8188635	73733266	33616274	799	141225											
C14orf43	91748	broad.mit.edu	37	chr14	74196470	74196470	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggctgaggatggggggCggcgtgtagggaggtagctc	22	6	0	1	rs149124754		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74196470	A	A	74196470	2	1	172	1	0	0	0	0	0	0	0	1	1787	755	27	3		3	C14orf43	14	74196470	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	463204	74196470	33153070	800	141226											
NGB	58157	broad.mit.edu	37	chr14	77732669	77732669	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggctactggggatgaggGgacacccagaagccccttcc	14	12	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77732669	C	C	77732669	1	2	172	0	1	0	0	0	0	0	0	0	10487	1247	43	4		4	NGB	14	77732669	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	3536199	77732669	29616871	801	141227											
BCL11B	64919	broad.mit.edu	37	chr14	99724153	99724153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtcttcttcgaggatggCggcctccacatggtcagcct	11	14	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99724153	A	A	99724153	3	1	172	1	0	0	0	0	1	0	0	0	1369	768	27	3	2614	3	BCL11B	14	99724153	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	21991484	99724153	7625387	802	141228											
PLD4	122618	broad.mit.edu	37	chr14	105396484	105396484	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaggcctgcctgaagcgTttccccgcctgcactcctgg	12	16	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105396484	C	C	105396484	1	2	172	0	1	0	0	0	0	0	0	0	12143	1740	60	5		5	PLD4	14	105396484	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	5672331	105396484	1953056	803	141229											
NIPA1	123606	broad.mit.edu	37	chr15	23060868	23060868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggaccgtggggaccgcCgtgtaagccaggaagtttcc	14	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23060868	A	A	23060868	2	1	172	1	0	0	0	0	0	0	0	1	10517	639	23	1		1	NIPA1	15	23060868	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08		23060868	79470524	804	141230											
C15orf2	23742	broad.mit.edu	37	chr15	24923236	24923236	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccagcggcaacactgcctCagtccaaggctccaccagtt	8	17	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24923236	A	A	24923236	4	1	172	1	0	0	0	0	0	1	0	0	1797	838	29	3	2224	3	C15orf2	15	24923236	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1862368	24923236	77608156	805	141231											
FSIP1	161835	broad.mit.edu	37	chr15	40018855	40018855	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggggaggctgcagagagttCttggagttttatatcaattt	13	4	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40018855	A	A	40018855	4	1	172	1	0	0	0	0	0	1	0	0	6134	922	32	3	776	3	FSIP1	15	40018855	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	15095619	40018855	62512537	806	141232											
TYRO3	7301	broad.mit.edu	37	chr15	41857260	41857260	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaacatcaccgtgacaaAgctttccagcagcaacgcta	6	14	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41857260	G	G	41857260	3	3	172	1	0	0	0	0	1	0	0	0	16940	72	3	5	726	5	TYRO3	15	41857260	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1838405	41857260	60674132	807	141233											
MAPKBP1	23005	broad.mit.edu	37	chr15	42105978	42105978	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgctagcgtcaccgaggccAggtgagctatgtgggccccc	14	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42105978	T	T	42105978	3	4	172	1	0	0	0	0	1	0	0	0	9384	202	7	5	1031	5	MAPKBP1	15	42105978	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	248718	42105978	60425414	808	141234											
EPB42	2038	broad.mit.edu	37	chr15	43503780	43503780	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgggggtcctaggtccAccctccacatccaggcctct	10	17	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43503780	C	C	43503780	1	2	172	0	1	0	0	0	0	0	0	0	5200	174	6	5		5	EPB42	15	43503780	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1397802	43503780	59027612	809	141235											
TGM7	116179	broad.mit.edu	37	chr15	43585737	43585737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggctggccgcggcgcaCagtgagccgcttgacgccca	16	14	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43585737	A	A	43585737	3	1	172	1	0	0	0	0	1	0	0	0	15958	478	17	3	2077	3	TGM7	15	43585737	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	81957	43585737	58945655	810	141236											
SLC12A1	6557	broad.mit.edu	37	chr15	48513130	48513130	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccacaggtaagatgcatgCtgaacatctggggagtcatg	12	8	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48513130	G	G	48513130	3	3	172	1	0	0	0	0	1	0	0	0	14495	796	28	4	575	4	SLC12A1	15	48513130	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4927393	48513130	54018262	811	141237											
CEP152	22995	broad.mit.edu	37	chr15	49054527	49054527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcaatgatagcattgtaTgggttttcattaagagacag	10	4	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49054527	C	C	49054527	1	2	172	0	1	0	0	0	0	0	0	0	3278	1479	51	5		5	CEP152	15	49054527	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	541397	49054527	53476865	812	141238											
DMXL2	23312	broad.mit.edu	37	chr15	51756966	51756966	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttggatatgtgttgatatAgttagggggtggaccttcaa	14	3	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51756966	C	C	51756966	3	2	172	1	0	0	0	0	1	0	0	0	4635	420	15	5	1447	5	DMXL2	15	51756966	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	2702439	51756966	50774426	813	141239											
ARID3B	10620	broad.mit.edu	37	chr15	74836611	74836611	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaagttgcagaggtggctGagaaagaaacccaggctgct	14	7	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74836611	A	A	74836611	3	1	172	1	0	0	0	0	1	0	0	0	919	1291	45	4	336	4	ARID3B	15	74836611	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	23079645	74836611	27694781	814	141240											
SCAMP5	192683	broad.mit.edu	37	chr15	75309110	75309110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaagtggttggtgctatcCgcagtgcctagccgtctctg	13	10	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75309110	A	A	75309110	1	1	172	0	1	0	0	0	0	0	0	0	13986	667	23	1		1	SCAMP5	15	75309110	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	472499	75309110	27222282	815	141241											
SCAPER	49855	broad.mit.edu	37	chr15	76866552	76866552	+	Frame_Shift_Del	DEL	C	-	-													ggtccgatccaaagcagacaCtttattgtttgcccatgagc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76866552	-	-	76866552	7	5	172	1	0	1	0	1	0	0	0	0	13990	565	20	0	1457	0	SCAPER	15	76866552	Frame_Shift_Del	DEL	C	TCGA-50-6594-01A-11D-1753-08	1557442	76866552	25664840	816	141242											
MAN2A2	4122	broad.mit.edu	37	chr15	91450480	91450480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagcctgaacagatccttGcccccctggcgtccagaggc	10	15	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91450480	T	T	91450480	1	4	172	0	1	0	0	0	0	0	0	0	9307	1334	46	3		3	MAN2A2	15	91450480	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	14583928	91450480	11080912	817	141243											
C15orf32	145858	broad.mit.edu	37	chr15	93043544	93043544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaacattatggctccatgCtaatgacctcgtcttccgta	7	12	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93043544	A	A	93043544	1	1	172	0	1	0	0	0	0	0	0	0	1803	812	28	3		3	C15orf32	15	93043544	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1593064	93043544	9487848	818	141244											
SYNM	23336	broad.mit.edu	37	chr15	99672854	99672854	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccagaacatttgtgcttgCtggttcagcggactcccctg	11	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99672854	G	G	99672854	3	3	172	1	0	0	0	0	1	0	0	0	15574	797	28	4	4302	4	SYNM	15	99672854	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	6629310	99672854	2858538	819	141245											
ALDH1A3	220	broad.mit.edu	37	chr15	101425464	101425464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattggttacacttcctttcCtggttagatatttatcaaca	5	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101425464	A	A	101425464	1	1	172	0	1	0	0	0	0	0	0	0	492	696	24	2		2	ALDH1A3	15	101425464	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1752610	101425464	1105928	820	141246											
CHTF18	63922	broad.mit.edu	37	chr16	848001	848001	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagccgcggacatgccctcGcattgcttcccgcagagtgc	12	15	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	848001	T	T	848001	1	4	172	0	1	0	0	0	0	0	0	0	3445	1102	38	3		3	CHTF18	16	848001	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08		848001	89506752	821	141247											
LMF1	64788	broad.mit.edu	37	chr16	929718	929718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaggtagtacgccacaGgattgggcatcggctgggtc	17	9	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	929718	A	A	929718	3	1	172	1	0	0	0	0	1	0	0	0	8919	1000	35	4	978	4	LMF1	16	929718	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	81717	929718	89425035	822	141248											
CACNA1H	8912	broad.mit.edu	37	chr16	1259320	1259320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctaccaagtgccgcgatcgcGacgggcaggtggtggccctg	16	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1259320	T	T	1259320	3	4	172	1	0	0	0	0	1	0	0	0	2571	1058	37	3	3714	3	CACNA1H	16	1259320	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	329602	1259320	89095433	823	141249											
IFT140	9742	broad.mit.edu	37	chr16	1616135	1616135	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacatcattttttccaaCaaaatcctcctgaaccacaa	2	13	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1616135	G	G	1616135	1	3	172	0	1	0	0	0	0	0	0	0	7626	493	17	4		4	IFT140	16	1616135	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	356815	1616135	88738618	824	141250											
PRSS21	10942	broad.mit.edu	37	chr16	2870849	2870849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtaatggagatgaacctgCcaggcacagtgggtgcccca	15	10	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2870849	A	A	2870849	1	1	172	0	1	0	0	0	0	0	0	0	12724	754	26	3		3	PRSS21	16	2870849	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1254714	2870849	87483904	825	141251											
EMP2	2013	broad.mit.edu	37	chr16	10631774	10631774	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttgttagggaagcccgttGatgtacttacatgacattag	10	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10631774	T	T	10631774	1	4	172	0	1	0	0	0	0	0	0	0	5144	1305	45	3		3	EMP2	16	10631774	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7760925	10631774	79722979	826	141252											
CIITA	4261	broad.mit.edu	37	chr16	11000948	11000948	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggctgctggccggccttttCcagaagaagctgctccgagg	15	12	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11000948	G	G	11000948	3	3	172	1	0	0	0	0	1	0	0	0	3459	854	30	4	1641	4	CIITA	16	11000948	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	369174	11000948	79353805	827	141253											
PDXDC1	23042	broad.mit.edu	37	chr16	15229592	15229593	+	Intron	DNP	CC	GA	GA													gtcgtaggactcgctcccatCcagcaccaggtcctgtgtgt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	15229593	GA	GA	15229592	1	3	172	0	1	0	0	0	0	0	0	0	11790	870	30	4		4	PDXDC1	16	15229592	Intron	DNP	CC	TCGA-50-6594-01A-11D-1753-08	4228644	15229592	75125161	828	141254											
KIAA0430	9665	broad.mit.edu	37	chr16	15694630	15694630	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctaacattcaggaagagTgtgacctacggagcctgcct	11	12	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15694630	A	A	15694630	1	1	172	0	1	0	0	0	0	0	0	0	8247	1711	59	5		5	KIAA0430	16	15694630	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	465038	15694630	74660123	829	141255											
GP2	2813	broad.mit.edu	37	chr16	20327419	20327419	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatgcctggattctatctaGactgctcctacaatgggcag	9	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20327419	T	T	20327419	1	4	172	0	1	0	0	0	0	0	0	0	6647	957	33	3		3	GP2	16	20327419	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4632789	20327419	70027334	830	141256											
ACSM2A	123876	broad.mit.edu	37	chr16	20497895	20497895	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactgatttgtttttcaacaGatagagtttgtcttgaacct	8	6	2	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20497895	T	T	20497895	5	4	172	1	0	0	0	0	0	0	1	0	183	956	33	3	1679	3	ACSM2A	16	20497895	Splice_Site	SNP	G	TCGA-50-6594-01A-11D-1753-08	170476	20497895	69856858	831	141257											
DNAH3	55567	broad.mit.edu	37	chr16	21051299	21051299	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaaatcagaatcggaacaCgtgcagtgaatactgaggga	11	7	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21051299	G	G	21051299	1	3	172	0	1	0	0	0	0	0	0	0	4643	551	19	4		4	DNAH3	16	21051299	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	553404	21051299	69303454	832	141258											
VWA3A	146177	broad.mit.edu	37	chr16	22132701	22132701	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgagcccaggagtttgagGatgcagtgagttatgattgt	14	5	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22132701	A	A	22132701	1	1	172	0	1	0	0	0	0	0	0	0	17367	1189	41	4		4	VWA3A	16	22132701	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1081402	22132701	68222052	833	141259											
PRKCB	5579	broad.mit.edu	37	chr16	24231390	24231390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttggaccaaaatgaatttGctggcttctcttatactaac	6	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24231390	T	T	24231390	3	4	172	1	0	0	0	0	1	0	0	0	12614	1319	46	3	2201	3	PRKCB	16	24231390	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2098689	24231390	66123363	834	141260											
SLC5A11	115584	broad.mit.edu	37	chr16	24919143	24919143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgagcccaggagttggagGctgcagtgagctatgctctc	14	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24919143	T	T	24919143	1	4	172	0	1	0	0	0	0	0	0	0	14777	1218	42	3		3	SLC5A11	16	24919143	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	687753	24919143	65435610	835	141261											
LCMT1	51451	broad.mit.edu	37	chr16	25175866	25175866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatgtgtacaattagagGgtcctgacttgatgataaca	9	7	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25175866	T	T	25175866	1	4	172	0	1	0	0	0	0	0	0	0	8750	1247	43	2		2	LCMT1	16	25175866	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	256723	25175866	65178887	836	141262											
IL4R	3566	broad.mit.edu	37	chr16	27372178	27372178	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcctgcatgcattgggaAggtgatagaattggagaggc	15	6	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27372178	T	T	27372178	1	4	172	0	1	0	0	0	0	0	0	0	7768	87	3	5		5	IL4R	16	27372178	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2196312	27372178	62982575	837	141263											
RABEP2	79874	broad.mit.edu	37	chr16	28919868	28919868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgaccaacgctctgccCtgcctgggaagaaggggccc	14	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28919868	A	A	28919868	1	1	172	0	1	0	0	0	0	0	0	0	13070	696	24	2		2	RABEP2	16	28919868	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1547690	28919868	61434885	838	141264											
KIF22	3835	broad.mit.edu	37	chr16	29810961	29810961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctcaggactctctgggtGgctcagcccacagtatcctt	9	15	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29810961	T	T	29810961	3	4	172	1	0	0	0	0	1	0	0	0	8360	1348	47	2	1029	2	KIF22	16	29810961	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	891093	29810961	60543792	839	141265											
SRCAP	10847	broad.mit.edu	37	chr16	30740811	30740811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattggcctctgagctctgGccccgggctcgtcctttgca	11	15	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30740811	T	T	30740811	3	4	172	1	0	0	0	0	1	0	0	0	15253	1212	42	3	6143	3	SRCAP	16	30740811	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	929850	30740811	59613942	840	141266											
ITGAX	3687	broad.mit.edu	37	chr16	31367143	31367143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggagattgggacgctggGgccgggggtggagggcagcc	24	7	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31367143	T	T	31367143	1	4	172	0	1	0	0	0	0	0	0	0	7959	1247	43	2		2	ITGAX	16	31367143	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	626332	31367143	58987610	841	141267											
ITGAX	3687	broad.mit.edu	37	chr16	31391128	31391128	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcatcaacttctgggtGcctgtggagctgaaccagga	13	10	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31391128	T	T	31391128	2	4	172	1	0	0	0	0	0	0	0	1	7959	1306	46	3		3	ITGAX	16	31391128	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	23985	31391128	58963625	842	141268											
ITGAD	3681	broad.mit.edu	37	chr16	31422253	31422253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggggaggatgagggtgGggacagtggccggggctagg	26	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31422253	T	T	31422253	1	4	172	0	1	0	0	0	0	0	0	0	7954	1247	43	2		2	ITGAD	16	31422253	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	31125	31422253	58932500	843	141269											
PHKB	5257	broad.mit.edu	37	chr16	47622698	47622698	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgtctgatcctgggagcaGagcgtgctcacttttgactg	12	10	3	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47622698	C	C	47622698	1	2	172	0	1	0	0	0	0	0	0	0	11940	957	33	4		4	PHKB	16	47622698	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	16200445	47622698	42732055	844	141270											
ZNF423	23090	broad.mit.edu	37	chr16	49557649	49557649	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttgttggcctggacgaaGactagacacagacacggctg	12	10	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49557649	T	T	49557649	2	4	172	1	0	0	0	0	0	0	0	1	18025	956	33	3		3	ZNF423	16	49557649	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1934951	49557649	40797104	845	141271											
SLC6A2	6530	broad.mit.edu	37	chr16	55733607	55733607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgcatgtggggagggGgctgtgtccaggatggagct	19	7	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55733607	T	T	55733607	1	4	172	0	1	0	0	0	0	0	0	0	14797	1247	43	2		2	SLC6A2	16	55733607	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6175958	55733607	34621146	846	141272											
CES2	8824	broad.mit.edu	37	chr16	66969710	66969710	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggagggcaggcgcctgggAggtaggagctggtggagatg	23	6	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66969710	T	T	66969710	1	4	172	0	1	0	0	0	0	0	0	0	3300	319	11	5		5	CES2	16	66969710	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	11236103	66969710	23385043	847	141273											
EDC4	23644	broad.mit.edu	37	chr16	67913196	67913196	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggtgtgctcatcaagctcTtttgtgtgcatactaagtga	10	9	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67913196	C	C	67913196	3	2	172	1	0	0	0	0	1	0	0	0	4948	1609	56	5	1575	5	EDC4	16	67913196	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	943486	67913196	22441557	848	141274											
DPEP2	64174	broad.mit.edu	37	chr16	68036948	68036948	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctggaaccatcttccccGtgatttccgtgagattgtga	9	12	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68036948	T	T	68036948	1	4	172	0	1	0	0	0	0	0	0	0	4754	1160	40	3		3	DPEP2	16	68036948	5'Flank	SNP	G	TCGA-50-6594-01A-11D-1753-08	123752	68036948	22317805	849	141275											
HYDIN	54768	broad.mit.edu	37	chr16	71212908	71212908	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgaaatataatttctgatgGaaagggctggaataatgcct	10	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71212908	C	C	71212908	3	2	172	1	0	0	0	0	1	0	0	0	7537	1174	41	4	15402	4	HYDIN	16	71212908	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3175960	71212908	19141845	850	141276											
CALB2	794	broad.mit.edu	37	chr16	71419410	71419410	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggctagactcttagacatCcctggaatgggtcgggacag	14	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71419410	G	G	71419410	1	3	172	0	1	0	0	0	0	0	0	0	2600	870	30	4		4	CALB2	16	71419410	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	206502	71419410	18935343	851	141277											
TAT	6898	broad.mit.edu	37	chr16	71606283	71606283	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaacatttagggggaatcCtcacttatctcaagggtcca	9	9	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71606283	T	T	71606283	1	4	172	0	1	0	0	0	0	0	0	0	15709	696	24	4		4	TAT	16	71606283	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	186873	71606283	18748470	852	141278											
ZFHX3	463	broad.mit.edu	37	chr16	72992181	72992181	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcagagggagccagcgtGctggtgatggggaacgaagc	18	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72992181	A	A	72992181	3	1	172	1	0	0	0	0	1	0	0	0	17760	1319	46	4	9283	4	ZFHX3	16	72992181	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1385898	72992181	17362572	853	141279											
WWOX	51741	broad.mit.edu	37	chr16	78312491	78312491	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaactgtcttttgtttgtAtcttacagaaaacaaaatac	4	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78312491	G	G	78312491	1	3	172	0	1	0	0	0	0	0	0	0	17541	464	16	5		5	WWOX	16	78312491	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	5320310	78312491	12042262	854	141280											
PKD1L2	114780	broad.mit.edu	37	chr16	81167252	81167252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcagcggtgagaggtgGctggtagacatccctgctgc	16	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81167252	T	T	81167252	3	4	172	1	0	0	0	0	1	0	0	0	12060	1203	42	3	1645	3	PKD1L2	16	81167252	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2854761	81167252	9187501	855	141281											
FBXO31	79791	broad.mit.edu	37	chr16	87368896	87368896	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagccccaccaaccaggtCagccgccactcaccgtgatc	8	19	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87368896	A	A	87368896	1	1	172	0	1	0	0	0	0	0	0	0	5798	841	29	3		3	FBXO31	16	87368896	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6201644	87368896	2985857	856	141282											
BANP	54971	broad.mit.edu	37	chr16	88017823	88017823	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtccccatggtggccgGctcccctctcggggcaaccc	12	19	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88017823	T	T	88017823	3	4	172	1	0	0	0	0	1	0	0	0	1315	1203	42	3	348	3	BANP	16	88017823	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	648927	88017823	2336930	857	141283											
ANKRD11	29123	broad.mit.edu	37	chr16	89351666	89351666	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcaatatcgtatgtgccgaGagtctcagcttctctcctgt	10	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89351666	A	A	89351666	2	1	172	1	0	0	0	0	0	0	0	1	639	929	33	4		4	ANKRD11	16	89351666	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1333843	89351666	1003087	858	141284											
UBE2G1	7326	broad.mit.edu	37	chr17	4204760	4204760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttcagcagctatttttGctataataatcctgctgccc	7	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4204760	T	T	4204760	1	4	172	0	1	0	0	0	0	0	0	0	16982	1334	46	3		3	UBE2G1	17	4204760	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08		4204760	76990450	859	141285											
CLEC10A	10462	broad.mit.edu	37	chr17	6978642	6978642	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccctgggggaaacgctgaCggaggacattggcacagaaa	14	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6978642	T	T	6978642	1	4	172	0	1	0	0	0	0	0	0	0	3527	551	19	4		4	CLEC10A	17	6978642	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2773882	6978642	74216568	860	141286											
TP53	7157	broad.mit.edu	37	chr17	7577124	7577124	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacaggcacaaacacgcaCctcaaagctgttccgtccca	8	15	1	0	rs121912657		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577124	T	T	7577124	3	4	172	1	0	0	0	0	1	0	0	0	16505	507	18	4	472	4	TP53	17	7577124	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	598482	7577124	73618086	861	141287											
PIK3R5	23533	broad.mit.edu	37	chr17	8791869	8791869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcccaggcctgcggtggcctCggcgttcctggctgccacgc	15	17	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8791869	A	A	8791869	3	1	172	1	0	0	0	0	1	0	0	0	12017	884	31	3	1447	3	PIK3R5	17	8791869	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1214745	8791869	72403341	862	141288											
MYH13	8735	broad.mit.edu	37	chr17	10265460	10265460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgaactgataggcattGtcagagatggagaagatgtg	14	4	1	5			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10265460	T	T	10265460	3	4	172	1	0	0	0	0	1	0	0	0	10126	1368	48	3	5484	3	MYH13	17	10265460	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1473591	10265460	70929750	863	141289											
MYH8	4626	broad.mit.edu	37	chr17	10300383	10300383	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttggtcccttttcacagtCctatttcttttcttttcttt	3	12	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10300383	A	A	10300383	1	1	172	0	1	0	0	0	0	0	0	0	10135	870	30	3		3	MYH8	17	10300383	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	34923	10300383	70894827	864	141290											
MYH3	4621	broad.mit.edu	37	chr17	10541071	10541071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttggttttggccagctaCgcccattgggtgccaggagg	14	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10541071	A	A	10541071	1	1	172	0	1	0	0	0	0	0	0	0	10130	551	19	3		3	MYH3	17	10541071	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	240688	10541071	70654139	865	141291											
DNAH9	1770	broad.mit.edu	37	chr17	11583981	11583981	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgggctctgtccagctcagGactatgggagaggaaagagc	15	9	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11583981	A	A	11583981	1	1	172	0	1	0	0	0	0	0	0	0	4648	1189	41	4		4	DNAH9	17	11583981	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1042910	11583981	69611229	866	141292											
DNAH9	1770	broad.mit.edu	37	chr17	11672316	11672316	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaagatactcctgaccgGtgcttatttggggagctcca	13	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11672316	A	A	11672316	1	1	172	0	1	0	0	0	0	0	0	0	4648	1276	44	4		4	DNAH9	17	11672316	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	88335	11672316	69522894	867	141293											
LGALS9C	654346	broad.mit.edu	37	chr17	18391107	18391107	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaccggtcccaggggctGggatgcagggcccagcgtag	18	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18391107	T	T	18391107	1	4	172	0	1	0	0	0	0	0	0	0	8822	1363	47	2		2	LGALS9C	17	18391107	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6718791	18391107	62804103	868	141294											
LGALS9C	654346	broad.mit.edu	37	chr17	18391139	18391139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgtagctgtgcttaggCccagctggggggacccaagc	15	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18391139	A	A	18391139	1	1	172	0	1	0	0	0	0	0	0	0	8822	754	26	3		3	LGALS9C	17	18391139	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	32	18391139	62804071	869	141295											
RNF112	7732	broad.mit.edu	37	chr17	19318159	19318159	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgcctcttgcctgcccCagggaggcggcggatgaacc	14	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19318159	T	T	19318159	3	4	172	1	0	0	0	0	1	0	0	0	13537	594	21	4	833	4	RNF112	17	19318159	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	927020	19318159	61877051	870	141296											
NOS2	4843	broad.mit.edu	37	chr17	26114667	26114667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaggagagcaggaggaagGgcaggaggcagcgaccctgc	19	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26114667	T	T	26114667	1	4	172	0	1	0	0	0	0	0	0	0	10638	1247	43	2		2	NOS2	17	26114667	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	6796508	26114667	55080543	871	141297											
TMEM132E	124842	broad.mit.edu	37	chr17	32963144	32963144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctggccctctccctgcGgcccagccctgggagcagcc	12	20	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32963144	T	T	32963144	3	4	172	1	0	0	0	0	1	0	0	0	16171	1116	39	1	1860	1	TMEM132E	17	32963144	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	6848477	32963144	48232066	872	141298											
MLLT6	4302	broad.mit.edu	37	chr17	36875767	36875767	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagccttcccttcttccAagagccagacctggaggact	8	16	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36875767	G	G	36875767	1	3	172	0	1	0	0	0	0	0	0	0	9723	145	5	5		5	MLLT6	17	36875767	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3912623	36875767	44319443	873	141299											
KRT33A	3883	broad.mit.edu	37	chr17	39506922	39506923	+	Missense_Mutation	DNP	CC	AA	AA													tggcggggatgttgcaggccCcgggcagggtgcagccgtgg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	39506923	AA	AA	39506922	3	1	172	1	0	0	0	0	1	0	0	0	8540	623	22	2	1144	2	KRT33A	17	39506922	Missense_Mutation	DNP	CC	TCGA-50-6594-01A-11D-1753-08	2631155	39506922	41688288	874	141300											
KRT38	8687	broad.mit.edu	37	chr17	39597226	39597226	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagctgggaaagctgaacCactgagactgaagcctcctc	10	12	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39597226	A	A	39597226	1	1	172	0	1	0	0	0	0	0	0	0	8546	609	21	2		2	KRT38	17	39597226	5'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	90304	39597226	41597984	875	141301											
EIF1	10209	broad.mit.edu	37	chr17	39846406	39846406	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtaattcagctacagggtGaccaacgcaagaacatatgc	9	9	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39846406	A	A	39846406	3	1	172	1	0	0	0	0	1	0	0	0	5030	1290	45	4	272	4	EIF1	17	39846406	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	249180	39846406	41348804	876	141302											
STAT3	6774	broad.mit.edu	37	chr17	40474933	40474933	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtcaaggccatctccaccCaccagggggcagtaggtgct	13	13	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40474933	T	T	40474933	1	4	172	0	1	0	0	0	0	0	0	0	15384	609	21	4		4	STAT3	17	40474933	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	628527	40474933	40720277	877	141303											
DHX8	1659	broad.mit.edu	37	chr17	41597599	41597599	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacacactgggggccctGgatgacgagggcctgctcac	14	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41597599	T	T	41597599	2	4	172	1	0	0	0	0	0	0	0	1	4555	1335	47	2		2	DHX8	17	41597599	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1122666	41597599	39597611	878	141304											
MPP2	4355	broad.mit.edu	37	chr17	41958262	41958262	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcaccaggctgcacggtGagggaggggcggagctctca	17	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41958262	T	T	41958262	1	4	172	0	1	0	0	0	0	0	0	0	9828	1305	45	3		3	MPP2	17	41958262	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	360663	41958262	39236948	879	141305											
ITGA2B	3674	broad.mit.edu	37	chr17	42451883	42451883	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcaccttgacacctgcCtttcacaaagactcaaacct	4	15	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42451883	G	G	42451883	1	3	172	0	1	0	0	0	0	0	0	0	7946	696	24	4		4	ITGA2B	17	42451883	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	493621	42451883	38743327	880	141306											
EFTUD2	9343	broad.mit.edu	37	chr17	42942220	42942220	+	Intron	DEL	G	-	-													gatttctgacctccatcgctGggtgagaaaaaattgctgtg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42942220	-	-	42942220	6	5	172	0	1	1	0	1	0	0	0	0	5001	1363	47	0		0	EFTUD2	17	42942220	Intron	DEL	G	TCGA-50-6594-01A-11D-1753-08	490337	42942220	38252990	881	141307											
HEXIM1	10614	broad.mit.edu	37	chr17	43227463	43227463	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcctctcgcgcatggaGgacgagaacaaccggctgcg	14	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43227463	A	A	43227463	2	1	172	1	0	0	0	0	0	0	0	1	7143	991	35	4		4	HEXIM1	17	43227463	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	285243	43227463	37967747	882	141308											
NPEPPS	9520	broad.mit.edu	37	chr17	45608960	45608960	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccggggcaagctgcggggcGagcagttaggccgcgcccgc	18	15	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45608960	T	T	45608960	1	4	172	0	1	0	0	0	0	0	0	0	10670	1073	37	3		3	NPEPPS	17	45608960	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2381497	45608960	35586250	883	141309											
OSBPL7	114881	broad.mit.edu	37	chr17	45886170	45886170	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaggacaaagccccagctCtgtactctgtggagggagtg	15	9	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45886170	A	A	45886170	1	1	172	0	1	0	0	0	0	0	0	0	11376	928	32	3		3	OSBPL7	17	45886170	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	277210	45886170	35309040	884	141310											
CALCOCO2	10241	broad.mit.edu	37	chr17	46925870	46925870	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccattacgggtagcaatatAggataggatggaatttgagt	13	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46925870	G	G	46925870	1	3	172	0	1	0	0	0	0	0	0	0	2604	435	15	5		5	CALCOCO2	17	46925870	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1039700	46925870	34269340	885	141311											
ABI3	51225	broad.mit.edu	37	chr17	47299525	47299525	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgaattggggctgcctcCacccccaccaggatttgggc	12	13	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47299525	T	T	47299525	3	4	172	1	0	0	0	0	1	0	0	0	90	594	21	4	901	4	ABI3	17	47299525	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	373655	47299525	33895685	886	141312											
NGFR	4804	broad.mit.edu	37	chr17	47583905	47583905	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcgaggagtgccccgaCggcacgtattccgacgaggc	16	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47583905	T	T	47583905	2	4	172	1	0	0	0	0	0	0	0	1	10491	535	19	4		4	NGFR	17	47583905	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	284380	47583905	33611305	887	141313											
CA10	56934	broad.mit.edu	37	chr17	49713294	49713294	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgggatagtcatcgaCccatcgtaagtgatgaaact	12	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49713294	T	T	49713294	2	4	172	1	0	0	0	0	0	0	0	1	2537	494	18	4		4	CA10	17	49713294	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	2129389	49713294	31481916	888	141314											
KIF2B	84643	broad.mit.edu	37	chr17	51901662	51901662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgtcaacgctcactcatCcaggagccatgcagtgttcc	8	15	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51901662	A	A	51901662	3	1	172	1	0	0	0	0	1	0	0	0	8368	855	30	3	1270	3	KIF2B	17	51901662	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2188368	51901662	29293548	889	141315											
STXBP4	252983	broad.mit.edu	37	chr17	53084700	53084701	+	Intron	INS	-	A	A													tgagactctgtcccccctccINSaaaaaaaaaaaagaaaagaa							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53084701	A	A	53084700	6	5	172	0	1	1	1	0	0	0	0	0	15473	609	21	0		0	STXBP4	17	53084700	Intron	INS	-	TCGA-50-6594-01A-11D-1753-08	1183038	53084700	28110510	890	141316											
OR4D2	124538	broad.mit.edu	37	chr17	56247798	56247798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttacctctatgcccggcCcttcactccattccctatgg	5	17	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247798	A	A	56247798	3	1	172	1	0	0	0	0	1	0	0	0	11150	623	22	2	784	2	OR4D2	17	56247798	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3163098	56247798	24947412	891	141317											
TEX14	56155	broad.mit.edu	37	chr17	56665210	56665210	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagggtgccagaacccacCcccacccccgctccaccacc	7	23	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56665210	A	A	56665210	1	1	172	0	1	0	0	0	0	0	0	0	15900	638	22	2		2	TEX14	17	56665210	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	417412	56665210	24530000	892	141318											
CLTC	1213	broad.mit.edu	37	chr17	57759573	57759573	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcaattttcatttacttgGgtgaaagataaactaggatg	9	4	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57759573	C	C	57759573	1	2	172	0	1	0	0	0	0	0	0	0	3598	1247	43	4		4	CLTC	17	57759573	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1094363	57759573	23435637	893	141319											
CCDC47	57003	broad.mit.edu	37	chr17	61833629	61833629	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcattccgtctgtgacttCtcccatctctgacaggatgg	8	13	4	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61833629	A	A	61833629	4	1	172	1	0	0	0	0	0	1	0	0	2846	922	32	3	556	3	CCDC47	17	61833629	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4074056	61833629	19361581	894	141320											
GH2	2689	broad.mit.edu	37	chr17	61959189	61959189	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagctgtccacaggacCctgagtggttcggggagttg	17	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61959189	A	A	61959189	1	1	172	0	1	0	0	0	0	0	0	0	6432	638	22	2		2	GH2	17	61959189	5'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	125560	61959189	19236021	895	141321											
CSHL1	1444	broad.mit.edu	37	chr17	61988148	61988148	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtaggtgtcaatggcCagctggtgtgcgcgatgggc	17	9	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61988148	T	T	61988148	2	4	172	1	0	0	0	0	0	0	0	1	3976	581	21	4		4	CSHL1	17	61988148	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	28959	61988148	19207062	896	141322											
GH1	2688	broad.mit.edu	37	chr17	61994662	61994662	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcacagggatgccaccCgggcagctagaagccacagc	15	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61994662	A	A	61994662	1	1	172	0	1	0	0	0	0	0	0	0	6431	667	23	1		1	GH1	17	61994662	3'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	6514	61994662	19200548	897	141323											
CACNG4	27092	broad.mit.edu	37	chr17	65026491	65026492	+	Intron	DNP	CC	TT	TT													atcagagaggggagtgtccaCctgttccctacactgcccgt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	65026492	TT	TT	65026491	1	4	172	0	1	0	0	0	0	0	0	0	2585	522	18	4		4	CACNG4	17	65026491	Intron	DNP	CC	TCGA-50-6594-01A-11D-1753-08	3031829	65026491	16168719	898	141324											
ABCA6	23460	broad.mit.edu	37	chr17	67099179	67099179	+	Intron	SNP	C	A	A													atcaaacttttaaaataagtCatatacataattaaagttaa							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67099179	A	A	67099179	1	1	172	0	1	0	0	0	0	0	0	0	36	841	29	3		3	ABCA6	17	67099179	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2072688	67099179	14096031	899	141325	607	2									
ABCA6	23460	broad.mit.edu	37	chr17	67099181	67099181	+	Intron	SNP	T	A	A													caaacttttaaaataagtcaTatacataattaaagttaata							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67099181	A	A	67099181	1	1	172	0	1	0	0	0	0	0	0	0	36	1421	49	5		5	ABCA6	17	67099181	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	2	67099181	14096029	900	141326	607	2									
ABCA5	23461	broad.mit.edu	37	chr17	67269929	67269929	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgtaaaccaaaatttaCtgtaatatattcttcagcat	3	6	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67269929	A	A	67269929	1	1	172	0	1	0	0	0	0	0	0	0	35	580	20	3		3	ABCA5	17	67269929	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	170748	67269929	13925281	901	141327											
DNAI2	64446	broad.mit.edu	37	chr17	72281270	72281270	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaccccctggagctggagcAgaccatccgtttccggaaga	12	13	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72281270	T	T	72281270	3	4	172	1	0	0	0	0	1	0	0	0	4650	188	7	5	281	5	DNAI2	17	72281270	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	5011341	72281270	8913940	902	141328											
RNF157	114804	broad.mit.edu	37	chr17	74151253	74151253	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgcagcctcctggccctgGtccttactggcatccccagc	10	18	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74151253	C	C	74151253	1	2	172	0	1	0	0	0	0	0	0	0	13565	1276	44	4		4	RNF157	17	74151253	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1869983	74151253	7043957	903	141329											
DNAH17	8632	broad.mit.edu	37	chr17	76539980	76539980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccagcatccctgactgCtgcgtagcgcttgttgaggt	11	13	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76539980	A	A	76539980	3	1	172	1	0	0	0	0	1	0	0	0	4641	797	28	3	11157	3	DNAH17	17	76539980	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2388727	76539980	4655230	904	141330											
AZI1	22994	broad.mit.edu	37	chr17	79173736	79173736	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctggagtcccctagagttCgtggaatctcagggccagca	12	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79173736	A	A	79173736	1	1	172	0	1	0	0	0	0	0	0	0	1245	899	31	3		3	AZI1	17	79173736	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2633756	79173736	2021474	905	141331											
ADCYAP1	116	broad.mit.edu	37	chr18	905426	905426	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgaggctggccctgctggtCtatgggataatcatgcacag	14	10	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	905426	A	A	905426	2	1	172	1	0	0	0	0	0	0	0	1	302	900	32	3		3	ADCYAP1	18	905426	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08		905426	77171822	906	141332											
EPB41L3	23136	broad.mit.edu	37	chr18	5395218	5395218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catggttcagtagggggaaaTggccgaagatgctgacatca	14	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5395218	C	C	5395218	1	2	172	0	1	0	0	0	0	0	0	0	5196	1479	51	5		5	EPB41L3	18	5395218	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	4489792	5395218	72682030	907	141333											
AFG3L2	10939	broad.mit.edu	37	chr18	12363881	12363881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttaaaaataaattcacaCataaattcacagaaaatact	1	6	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12363881	A	A	12363881	1	1	172	0	1	0	0	0	0	0	0	0	360	493	17	3		3	AFG3L2	18	12363881	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	6968663	12363881	65713367	908	141334											
PSMG2	56984	broad.mit.edu	37	chr18	12724672	12724672	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctggttgtattcattaactCgcactttatatactacctaa	4	9	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12724672	A	A	12724672	1	1	172	0	1	0	0	0	0	0	0	0	12818	899	31	3		3	PSMG2	18	12724672	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	360791	12724672	65352576	909	141335											
MC5R	4161	broad.mit.edu	37	chr18	13825812	13825812	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatctcaacctgaatgcCacagagggcaacctttcagg	10	11	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13825812	A	A	13825812	2	1	172	1	0	0	0	0	0	0	0	1	9460	581	21	2		2	MC5R	18	13825812	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	1101140	13825812	64251436	910	141336											
MC5R	4161	broad.mit.edu	37	chr18	13826320	13826320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtactcagaatccacctacGtcatcctgtgcctcatctcc	5	16	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13826320	T	T	13826320	3	4	172	1	0	0	0	0	1	0	0	0	9460	1145	40	3	558	3	MC5R	18	13826320	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	508	13826320	64250928	911	141337											
DSC1	1823	broad.mit.edu	37	chr18	28719723	28719723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactcacctgcatccactgCaacaactgaaatattgtatt	5	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28719723	A	A	28719723	3	1	172	1	0	0	0	0	1	0	0	0	4805	710	25	3	1097	3	DSC1	18	28719723	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	14893403	28719723	49357525	912	141338											
DSG1	1828	broad.mit.edu	37	chr18	28906836	28906836	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttattgctgtcatttaaGgtaagagattataacactaa	6	5	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28906836	C	C	28906836	5	2	172	1	0	0	0	0	0	0	1	0	4816	1014	35	4	94	4	DSG1	18	28906836	Splice_Site	SNP	G	TCGA-50-6594-01A-11D-1753-08	187113	28906836	49170412	913	141339											
DSG1	1828	broad.mit.edu	37	chr18	28913555	28913555	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaatatgtatttttagcaaTacggccagtatgctcttgct	8	7	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28913555	C	C	28913555	3	2	172	1	0	0	0	0	1	0	0	0	4816	1406	49	5	714	5	DSG1	18	28913555	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	6719	28913555	49163693	914	141340											
DSG4	147409	broad.mit.edu	37	chr18	28981003	28981003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagaaaatttattttcaGtattttaagaaaactagtac	6	3	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28981003	T	T	28981003	1	4	172	0	1	0	0	0	0	0	0	0	4819	1044	36	3		3	DSG4	18	28981003	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	67448	28981003	49096245	915	141341											
DSG3	1830	broad.mit.edu	37	chr18	29038552	29038552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagtcgaccgggaggaaactCcaagcttcctggtaagtttg	12	9	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29038552	A	A	29038552	3	1	172	1	0	0	0	0	1	0	0	0	4818	855	30	3	375	3	DSG3	18	29038552	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	57549	29038552	49038696	916	141342											
DSG3	1830	broad.mit.edu	37	chr18	29046559	29046559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatttcaatgacaattgtcCaacagctgtcctcgaaaaag	7	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29046559	A	A	29046559	3	1	172	1	0	0	0	0	1	0	0	0	4818	594	21	2	1520	2	DSG3	18	29046559	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	8007	29046559	49030689	917	141343											
DSG3	1830	broad.mit.edu	37	chr18	29054364	29054364	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctggactcctacttttcTcaggtaatttggtgaaaaac	7	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29054364	A	A	29054364	2	1	172	1	0	0	0	0	0	0	0	1	4818	1538	54	5		5	DSG3	18	29054364	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	7805	29054364	49022884	918	141344											
RIT2	6014	broad.mit.edu	37	chr18	40500615	40500615	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatcttttttagaaagggcCctgggatttcccaaaatgca	8	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40500615	T	T	40500615	1	4	172	0	1	0	0	0	0	0	0	0	13498	638	22	4		4	RIT2	18	40500615	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	11446251	40500615	37576633	919	141345											
KATNAL2	83473	broad.mit.edu	37	chr18	44627236	44627236	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgttgtgttcttatcctaGaaagcagcgacttacccagg	9	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44627236	C	C	44627236	5	2	172	1	0	0	0	0	0	0	1	0	8056	956	33	4	1315	4	KATNAL2	18	44627236	Splice_Site	SNP	G	TCGA-50-6594-01A-11D-1753-08	4126621	44627236	33450012	920	141346											
SEC11C	90701	broad.mit.edu	37	chr18	56822759	56822759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtgcttcagttgaatgGttgtcttaagcagtcatctt	9	6	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56822759	T	T	56822759	1	4	172	0	1	0	0	0	0	0	0	0	14092	1276	44	3		3	SEC11C	18	56822759	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	12195523	56822759	21254489	921	141347											
CD226	10666	broad.mit.edu	37	chr18	67531511	67531511	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagatccatgcatgagtacAtaagagtcattactaatgca	7	7	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67531511	T	T	67531511	1	4	172	0	1	0	0	0	0	0	0	0	3016	232	8	5		5	CD226	18	67531511	3'UTR	SNP	A	TCGA-50-6594-01A-11D-1753-08	10708752	67531511	10545737	922	141348											
ZNF236	7776	broad.mit.edu	37	chr18	74627621	74627621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagtgaaggcgttcagctGcagtgtgtgcaatgcttcct	14	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74627621	A	A	74627621	3	1	172	1	0	0	0	0	1	0	0	0	17915	1319	46	4	3148	4	ZNF236	18	74627621	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	7096110	74627621	3449627	923	141349											
FZR1	51343	broad.mit.edu	37	chr19	3527169	3527169	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctgcgggtcctggtgggcGaggctgaagggggcttccca	18	12	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3527169	T	T	3527169	1	4	172	0	1	0	0	0	0	0	0	0	6198	1073	37	3		3	FZR1	19	3527169	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08		3527169	55601814	924	141350											
MATK	4145	broad.mit.edu	37	chr19	3781689	3781689	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtggagtgaagacccaGtcagaggggtaatgggcccc	16	10	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3781689	C	C	3781689	1	2	172	0	1	0	0	0	0	0	0	0	9424	1044	36	4		4	MATK	19	3781689	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	254520	3781689	55347294	925	141351											
STXBP2	6813	broad.mit.edu	37	chr19	7712288	7712288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctggcatagaagcccgGgcgggcccccggctcatcgt	15	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7712288	T	T	7712288	2	4	172	1	0	0	0	0	0	0	0	1	15471	1219	43	2		2	STXBP2	19	7712288	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	3930599	7712288	51416695	926	141352											
EVI5L	115704	broad.mit.edu	37	chr19	7925449	7925449	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctctctgcctcccccaggaGaacccccgcctcacagaaga	8	19	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7925449	T	T	7925449	3	4	172	1	0	0	0	0	1	0	0	0	5332	933	33	3	1427	3	EVI5L	19	7925449	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	213161	7925449	51203534	927	141353											
MYO1F	4542	broad.mit.edu	37	chr19	8595473	8595473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagctgggcgggggtcgtGgggggcaagggtgagtcctg	22	6	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8595473	T	T	8595473	1	4	172	0	1	0	0	0	0	0	0	0	10167	1363	47	2		2	MYO1F	19	8595473	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	670024	8595473	50533510	928	141354											
MUC16	94025	broad.mit.edu	37	chr19	9049773	9049773	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatacagtgtctaattcacTgtggaaaaaattgggggttg	12	4	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9049773	G	G	9049773	3	3	172	1	0	0	0	0	1	0	0	0	10067	1580	55	5	11985	5	MUC16	19	9049773	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	454300	9049773	50079210	929	141355											
ZNF20	7568	broad.mit.edu	37	chr19	12243489	12243490	+	Frame_Shift_Del	DEL	TT	-	-													cattgcttgcattgatagggTttctctccagtgtgagtcct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12243490	-	-	12243489	7	5	172	1	0	1	0	1	0	0	0	0	17887	1722	60	0	90	0	ZNF20	19	12243489	Frame_Shift_Del	DEL	TT	TCGA-50-6594-01A-11D-1753-08	3193716	12243489	46885494	930	141356											
RASAL3	64926	broad.mit.edu	37	chr19	15567097	15567097	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagataggggctggggccatGaccaccaaaacctgccacac	11	14	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15567097	A	A	15567097	1	1	172	0	1	0	0	0	0	0	0	0	13173	1305	45	4		4	RASAL3	19	15567097	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3323608	15567097	43561886	931	141357											
CPAMD8	27151	broad.mit.edu	37	chr19	17085965	17085965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacgggaagacagaggagCgccggcgtcgttgtgccgtc	17	12	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17085965	A	A	17085965	3	1	172	1	0	0	0	0	1	0	0	0	3827	768	27	3	3749	3	CPAMD8	19	17085965	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1518868	17085965	42043018	932	141358											
MYO9B	4650	broad.mit.edu	37	chr19	17322842	17322842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcggacccccatcatgcCcacggccaacatcaagctcc	8	20	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17322842	A	A	17322842	3	1	172	1	0	0	0	0	1	0	0	0	10179	623	22	2	6362	2	MYO9B	19	17322842	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	236877	17322842	41806141	933	141359											
FCHO1	23149	broad.mit.edu	37	chr19	17865961	17865961	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcctgcaggggtctccacAgagaccatcaggatgtcgta	14	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17865961	G	G	17865961	1	3	172	0	1	0	0	0	0	0	0	0	5844	203	7	5		5	FCHO1	19	17865961	5'UTR	SNP	A	TCGA-50-6594-01A-11D-1753-08	543119	17865961	41263022	934	141360											
SLC5A5	6528	broad.mit.edu	37	chr19	17994461	17994461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggtgggagggctccgccCtcagccccacttccacctac	11	18	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17994461	A	A	17994461	1	1	172	0	1	0	0	0	0	0	0	0	14782	696	24	2		2	SLC5A5	19	17994461	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	128500	17994461	41134522	935	141361											
KIAA0892	23383	broad.mit.edu	37	chr19	19449669	19449669	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttagcaactgcacacgcttGagaaggacctggtgtcggcc	12	11	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19449669	C	C	19449669	3	2	172	1	0	0	0	0	1	0	0	0	8266	1291	45	4	490	4	KIAA0892	19	19449669	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1455208	19449669	39679314	936	141362											
ZNF675	171392	broad.mit.edu	37	chr19	23844856	23844856	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttaaggactggctttctCtttgacctttggacctctca	7	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23844856	A	A	23844856	1	1	172	0	1	0	0	0	0	0	0	0	18209	928	32	3		3	ZNF675	19	23844856	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4395187	23844856	35284127	937	141363											
C19orf2	8725	broad.mit.edu	37	chr19	30498541	30498541	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaattgctgggtgaacttGataggtacttgatgacaaat	11	4	0	5			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30498541	A	A	30498541	3	1	172	1	0	0	0	0	1	0	0	0	1930	1290	45	4	708	4	C19orf2	19	30498541	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	6653685	30498541	28630442	938	141364											
ANKRD27	84079	broad.mit.edu	37	chr19	33117667	33117667	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaggtggagcggagtggctCcatggtagtctgtggcattt	16	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33117667	G	G	33117667	3	3	172	1	0	0	0	0	1	0	0	0	655	855	30	4	1721	4	ANKRD27	19	33117667	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2619126	33117667	26011316	939	141365											
RBM42	79171	broad.mit.edu	37	chr19	36122148	36122148	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagtaaagagtagcaaggtGagggggttgggcaatcaggc	17	4	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36122148	A	A	36122148	1	1	172	0	1	0	0	0	0	0	0	0	13244	1305	45	4		4	RBM42	19	36122148	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3004481	36122148	23006835	940	141366											
RYR1	6261	broad.mit.edu	37	chr19	38976771	38976771	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcgacggtgggcagcacGctcgcgaccccgtcgggggc	18	15	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38976771	C	C	38976771	3	2	172	1	0	0	0	0	1	0	0	0	13879	1087	38	4	5610	4	RYR1	19	38976771	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2854623	38976771	20152212	941	141367											
RYR1	6261	broad.mit.edu	37	chr19	39010054	39010054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgccgggacctctacGccctgtatccgctgctcatc	9	17	3	0	rs143533100		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39010054	T	T	39010054	3	4	172	1	0	0	0	0	1	0	0	0	13879	1087	38	3	10485	3	RYR1	19	39010054	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	33283	39010054	20118929	942	141368											
MAP4K1	11184	broad.mit.edu	37	chr19	39086175	39086175	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccatgcttccagaaggcctGaagctgacctccaaccatag	8	14	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39086175	A	A	39086175	4	1	172	1	0	0	0	0	0	1	0	0	9351	1299	45	4	289	4	MAP4K1	19	39086175	Nonsense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	76121	39086175	20042808	943	141369											
PAPL	390928	broad.mit.edu	37	chr19	39590759	39590759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatactcttgccttggcctcCcgaagcgctgggattaacag	11	12	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39590759	A	A	39590759	1	1	172	0	1	0	0	0	0	0	0	0	11521	638	22	2		2	PAPL	19	39590759	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	504584	39590759	19538224	944	141370											
CYP2B6	1555	broad.mit.edu	37	chr19	41518371	41518371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacccaacacaccagcttccGagggtacatcatccccaagg	7	17	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41518371	T	T	41518371	3	4	172	1	0	0	0	0	1	0	0	0	4197	1058	37	3	1159	3	CYP2B6	19	41518371	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1927612	41518371	17610612	945	141371											
PSG6	5675	broad.mit.edu	37	chr19	43530356	43530356	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccacctcagcctccctaaAtgctggcttttttatttttt	4	13	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43530356	G	G	43530356	1	3	172	0	1	0	0	0	0	0	0	0	12765	116	4	5		5	PSG6	19	43530356	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2011985	43530356	15598627	946	141372											
SYMPK	8189	broad.mit.edu	37	chr19	46330801	46330801	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggagctgaggtcgaggagGacatgcaggtactggaactg	18	6	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46330801	A	A	46330801	2	1	172	1	0	0	0	0	0	0	0	1	15558	1161	41	4		4	SYMPK	19	46330801	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2800445	46330801	12798182	947	141373											
SYMPK	8189	broad.mit.edu	37	chr19	46341918	46341918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggctatagagagagctGcaggccctccatccttccgg	12	13	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46341918	T	T	46341918	1	4	172	0	1	0	0	0	0	0	0	0	15558	1334	46	3		3	SYMPK	19	46341918	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	11117	46341918	12787065	948	141374											
CYTH2	9266	broad.mit.edu	37	chr19	48981804	48981804	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacatggtgtaccggatctCggcccccacgcaggaggaga	13	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48981804	T	T	48981804	3	4	172	1	0	0	0	0	1	0	0	0	4237	893	31	4	1112	4	CYTH2	19	48981804	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2639886	48981804	10147179	949	141375											
CGB	1082	broad.mit.edu	37	chr19	49539372	49539372	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaggtggcagcacctgCcctggccccgggcagctcac	13	18	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49539372	T	T	49539372	1	4	172	0	1	0	0	0	0	0	0	0	3326	754	26	4		4	CGB	19	49539372	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	557568	49539372	9589611	950	141376											
CPT1C	126129	broad.mit.edu	37	chr19	50213543	50213543	+	Intron	DEL	C	-	-													caccctacccccatctgtaaCcccaactactcctcttccct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50213543	-	-	50213543	6	5	172	0	1	1	0	1	0	0	0	0	3865	522	18	0		0	CPT1C	19	50213543	Intron	DEL	C	TCGA-50-6594-01A-11D-1753-08	674171	50213543	8915440	951	141377											
TBC1D17	79735	broad.mit.edu	37	chr19	50381712	50381712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggaaagttttgggaatgtGgtttggggagcgcctctaac	15	6	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50381712	T	T	50381712	1	4	172	0	1	0	0	0	0	0	0	0	15725	1363	47	2		2	TBC1D17	19	50381712	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	168169	50381712	8747271	952	141378											
SPIB	6689	broad.mit.edu	37	chr19	50926091	50926091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcccccagactccctgtggGactggactgtggccccacct	10	17	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50926091	T	T	50926091	3	4	172	1	0	0	0	0	1	0	0	0	15168	1174	41	3	150	3	SPIB	19	50926091	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	544379	50926091	8202892	953	141379											
KLK12	43849	broad.mit.edu	37	chr19	51534202	51534202	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagaacatgcgtgctgcAgggtcccctaaatctcccca	10	13	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51534202	G	G	51534202	1	3	172	0	1	0	0	0	0	0	0	0	8471	203	7	5		5	KLK12	19	51534202	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	608111	51534202	7594781	954	141380											
CACNG7	59284	broad.mit.edu	37	chr19	54445018	54445018	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtctaacccctgggtcctGgaggaagaggggtctgagag	18	8	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54445018	A	A	54445018	1	1	172	0	1	0	0	0	0	0	0	0	2588	1363	47	4		4	CACNG7	19	54445018	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2910816	54445018	4683965	955	141381											
TTYH1	57348	broad.mit.edu	37	chr19	54947401	54947401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccgggcctctgcccccCtcccgccctccgagctgctc	10	23	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54947401	A	A	54947401	1	1	172	0	1	0	0	0	0	0	0	0	16865	696	24	2		2	TTYH1	19	54947401	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	502383	54947401	4181582	956	141382											
LILRA2	11027	broad.mit.edu	37	chr19	55085876	55085876	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctgaggagtaccatcTatatagggaaaacaaatcag	10	7	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55085876	A	A	55085876	3	1	172	1	0	0	0	0	1	0	0	0	8857	1522	53	5	189	5	LILRA2	19	55085876	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	138475	55085876	4043107	957	141383											
ZNF524	147807	broad.mit.edu	37	chr19	56114165	56114165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccatgggggtacccctGtgtgcaccagatccagggtc	15	12	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56114165	T	T	56114165	2	4	172	1	0	0	0	0	0	0	0	1	18093	1364	48	3		3	ZNF524	19	56114165	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1028289	56114165	3014818	958	141384											
CCDC106	29903	broad.mit.edu	37	chr19	56163777	56163777	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctgcccctcactttcgtgtCcccgcctccacccctcagtg	6	22	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56163777	G	G	56163777	1	3	172	0	1	0	0	0	0	0	0	0	2767	870	30	4		4	CCDC106	19	56163777	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	49612	56163777	2965206	959	141385											
NLRP8	126205	broad.mit.edu	37	chr19	56499322	56499322	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcttgattgatcagttccCactctgacaactggcaaata	9	10	2	3	rs138338429	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56499322	A	A	56499322	1	1	172	0	1	0	0	0	0	0	0	0	10578	609	21	2		2	NLRP8	19	56499322	3'UTR	SNP	C	TCGA-50-6594-01A-11D-1753-08	335545	56499322	2629661	960	141386											
PEG3	5178	broad.mit.edu	37	chr19	57325336	57325336	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatctcttgatcttcaccttCttctgggtcttcaattccca	4	13	7	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57325336	A	A	57325336	4	1	172	1	0	0	0	0	0	1	0	0	11814	922	32	3	296	3	PEG3	19	57325336	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	826014	57325336	1803647	961	141387											
PEG3	5178	broad.mit.edu	37	chr19	57335710	57335710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcttttttgctcgcaccCaaggcttgagcttttcaggg	11	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57335710	A	A	57335710	3	1	172	1	0	0	0	0	1	0	0	0	11814	595	21	2		2	PEG3	19	57335710	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	10374	57335710	1793273	962	141388											
ZIK1	284307	broad.mit.edu	37	chr19	58099970	58099970	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgagtggggacttcttgatGaggctcagagactcctgtac	13	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58099970	A	A	58099970	3	1	172	1	0	0	0	0	1	0	0	0	17809	1291	45	4	146	4	ZIK1	19	58099970	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	764260	58099970	1029013	963	141389											
ZSCAN1	284312	broad.mit.edu	37	chr19	58557190	58557191	+	Intron	INS	-	A	A													cgctgctcatcctgtcccggINSaccatgtagctcccggacac							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58557191	A	A	58557190	6	5	172	0	1	1	1	0	0	0	0	0	18355	1189	41	0		0	ZSCAN1	19	58557190	Intron	INS	-	TCGA-50-6594-01A-11D-1753-08	457220	58557190	571793	964	141390											
ZNF8	7554	broad.mit.edu	37	chr19	58806844	58806844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccctgtgcacgttattgGggtggaagagccttctgtgg	14	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58806844	T	T	58806844	3	4	172	1	0	0	0	0	1	0	0	0	18296	1232	43	2	1684	2	ZNF8	19	58806844	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	249654	58806844	322139	965	141391											
UBE2M	9040	broad.mit.edu	37	chr19	59068421	59068421	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgggaattcagccatatgCaccctcacctcatcaggaca	7	15	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59068421	G	G	59068421	1	3	172	0	1	0	0	0	0	0	0	0	16991	725	25	4		4	UBE2M	19	59068421	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	261577	59068421	60562	966	141392											
ADAM33	80332	broad.mit.edu	37	chr20	3655363	3655363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgcagaggggtaggagCgggtgtgagggagctctttc	21	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3655363	A	A	3655363	1	1	172	0	1	0	0	0	0	0	0	0	250	783	27	3		3	ADAM33	20	3655363	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08		3655363	59370157	967	141393											
SIGLEC1	6614	broad.mit.edu	37	chr20	3677378	3677378	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcctggaaccgaccatgGgatgggacctggggacccag	15	11	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3677378	T	T	3677378	2	4	172	1	0	0	0	0	0	0	0	1	14418	1219	43	2		2	SIGLEC1	20	3677378	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	22015	3677378	59348142	968	141394											
RASSF2	9770	broad.mit.edu	37	chr20	4764972	4764972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctctgtcgaatcattaGccggagcacggtgtacctgg	12	12	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4764972	T	T	4764972	3	4	172	1	0	0	0	0	1	0	0	0	13194	962	34	3	56	3	RASSF2	20	4764972	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1087594	4764972	58260548	969	141395											
PLCB4	5332	broad.mit.edu	37	chr20	9402202	9402202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaggggcacttattcaaCcgacaacatcttctttttct	5	11	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9402202	A	A	9402202	1	1	172	0	1	0	0	0	0	0	0	0	12125	522	18	3		3	PLCB4	20	9402202	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	4637230	9402202	53623318	970	141396											
RALGAPA2	57186	broad.mit.edu	37	chr20	20617969	20617969	+	Intron	DEL	T	-	-													aagagactgcatagctttccTttggatatcctctatacacg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20617969	-	-	20617969	6	5	172	0	1	1	0	1	0	0	0	0	13122	1624	56	0		0	RALGAPA2	20	20617969	Intron	DEL	T	TCGA-50-6594-01A-11D-1753-08	11215767	20617969	42407551	971	141397											
CST8	10047	broad.mit.edu	37	chr20	23472318	23472318	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaccatgcccaggtgccGgtggctctccctgatcctcc	12	16	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23472318	A	A	23472318	3	1	172	1	0	0	0	0	1	0	0	0	4012	1116	39	4	16	4	CST8	20	23472318	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2854349	23472318	39553202	972	141398											
CST9L	128821	broad.mit.edu	37	chr20	23546595	23546595	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtatccaggagggaagcTggtgtcctgtcttacattgt	13	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23546595	A	A	23546595	1	1	172	0	1	0	0	0	0	0	0	0	4014	1595	55	5		5	CST9L	20	23546595	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	74277	23546595	39478925	973	141399											
ACSS1	84532	broad.mit.edu	37	chr20	25003719	25003719	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcaaacagggtcctcctTggccatttcctggcagggag	14	12	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25003719	A	A	25003719	4	1	172	1	0	0	0	0	0	1	0	0	188	1821	63	5	1292	5	ACSS1	20	25003719	Nonsense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	1457124	25003719	38021801	974	141400											
PLAGL2	5326	broad.mit.edu	37	chr20	30785030	30785030	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcctgcgagtggctcttcTtgacatgacgcgtcaggtgg	14	11	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30785030	C	C	30785030	3	2	172	1	0	0	0	0	1	0	0	0	12115	1609	56	5	778	5	PLAGL2	20	30785030	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	5781311	30785030	32240490	975	141401											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31967468	31967468	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccgaaaactattaacattCtgaccaagaagtgtcacttc	5	11	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31967468	G	G	31967468	3	3	172	1	0	0	0	0	1	0	0	0	3175	912	32	4	885	4	CDK5RAP1	20	31967468	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1182438	31967468	31058052	976	141402											
SPAG4	6676	broad.mit.edu	37	chr20	34205716	34205716	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagggaggtctgttccatCcgcttcctgttcacggctgt	11	14	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34205716	A	A	34205716	2	1	172	1	0	0	0	0	0	0	0	1	15096	845	30	3		3	SPAG4	20	34205716	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	2238248	34205716	28819804	977	141403											
NFS1	9054	broad.mit.edu	37	chr20	34278354	34278354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttaggtcaatgatcccaCtcttctgcactgggaggtag	10	11	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34278354	A	A	34278354	3	1	172	1	0	0	0	0	1	0	0	0	10480	565	20	3	867	3	NFS1	20	34278354	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	72638	34278354	28747166	978	141404											
C20orf117	140710	broad.mit.edu	37	chr20	35467806	35467806	+	Missense_Mutation	SNP	C	A	A													tcctccatatagacgtcccgCatctccagcatctcggcccg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35467806	A	A	35467806	3	1	172	1	0	0	0	0	1	0	0	0	2105	710	25	3	4377	3	C20orf117	20	35467806	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1189452	35467806	27557714	979	141405	608	2									
C20orf117	140710	broad.mit.edu	37	chr20	35467808	35467808	+	Missense_Mutation	SNP	T	A	A													ctccatatagacgtcccgcaTctccagcatctcggcccgca							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35467808	A	A	35467808	3	1	172	1	0	0	0	0	1	0	0	0	2105	1435	50	5	4379	5	C20orf117	20	35467808	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	2	35467808	27557712	980	141406	608	2									
PPP1R16B	26051	broad.mit.edu	37	chr20	37536417	37536417	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgccacaggtcctggccccGtcccccacaacagactcctc	8	21	0	1	rs112917272		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37536417	C	C	37536417	1	2	172	0	1	0	0	0	0	0	0	0	12467	1160	40	4		4	PPP1R16B	20	37536417	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2068609	37536417	25489103	981	141407											
PPP1R16B	26051	broad.mit.edu	37	chr20	37536806	37536806	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaacggggacatcagggaGaccaggacagaccaagagaa	13	9	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37536806	T	T	37536806	3	4	172	1	0	0	0	0	1	0	0	0	12467	933	33	3	1198	3	PPP1R16B	20	37536806	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	389	37536806	25488714	982	141408											
PTPRT	11122	broad.mit.edu	37	chr20	40828068	40828068	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaaccacagtcagatGgtgccagttgcattaaagca	10	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40828068	C	C	40828068	1	2	172	0	1	0	0	0	0	0	0	0	12920	1363	47	4		4	PTPRT	20	40828068	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3291262	40828068	22197452	983	141409											
PTPRT	11122	broad.mit.edu	37	chr20	40979483	40979483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatagagggaggacgtttaGgaaaggggttggataagaag	19	1	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40979483	T	T	40979483	1	4	172	0	1	0	0	0	0	0	0	0	12920	1015	35	2		2	PTPRT	20	40979483	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	151415	40979483	22046037	984	141410											
PTPRT	11122	broad.mit.edu	37	chr20	40981015	40981015	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggaaccttagggaggcgGgggaaggggcaggcatgtga	21	5	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40981015	C	C	40981015	1	2	172	0	1	0	0	0	0	0	0	0	12920	1247	43	4		4	PTPRT	20	40981015	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1532	40981015	22044505	985	141411											
HNF4A	3172	broad.mit.edu	37	chr20	43042431	43042431	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgcaggcggaggtcctGtcccgacaggtaccggggtg	16	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43042431	C	C	43042431	2	2	172	1	0	0	0	0	0	0	0	1	7320	1364	48	4		4	HNF4A	20	43042431	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	2061416	43042431	19983089	986	141412											
SERINC3	10955	broad.mit.edu	37	chr20	43129651	43129651	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaggtcaggacaatggaTgagattttataggccatcca	11	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43129651	A	A	43129651	1	1	172	0	1	0	0	0	0	0	0	0	14194	1479	51	5		5	SERINC3	20	43129651	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	87220	43129651	19895869	987	141413											
WISP2	8839	broad.mit.edu	37	chr20	43355732	43355732	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctttcccccctaggaccCcagttttctggccttgtctc	7	16	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43355732	A	A	43355732	2	1	172	1	0	0	0	0	0	0	0	1	17500	610	22	2		2	WISP2	20	43355732	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	226081	43355732	19669788	988	141414											
SEMG2	6407	broad.mit.edu	37	chr20	43851752	43851752	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagatgtatcccaaagcagTatttctttccaaattgaaaa	5	7	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43851752	C	C	43851752	2	2	172	1	0	0	0	0	0	0	0	1	14158	1635	57	5		5	SEMG2	20	43851752	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	496020	43851752	19173768	989	141415											
PLTP	5360	broad.mit.edu	37	chr20	44540080	44540080	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgctaggaagagggccccGaagagggccatggcgagcgg	19	10	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44540080	A	A	44540080	2	1	172	1	0	0	0	0	0	0	0	1	12209	1049	37	4		4	PLTP	20	44540080	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	688328	44540080	18485440	990	141416											
SLC12A5	57468	broad.mit.edu	37	chr20	44672001	44672001	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agggaagactctgcctgtgaGtggatggggaagagagagtc	18	5	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44672001	C	C	44672001	1	2	172	0	1	0	0	0	0	0	0	0	14499	1044	36	4		4	SLC12A5	20	44672001	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	131921	44672001	18353519	991	141417											
SLC2A10	81031	broad.mit.edu	37	chr20	45362393	45362393	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacgcattctttgtctgacAggttcaccctgagctttggc	9	13	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45362393	G	G	45362393	5	3	172	1	0	0	0	0	0	0	1	0	14653	202	7	5	1564	5	SLC2A10	20	45362393	Splice_Site	SNP	A	TCGA-50-6594-01A-11D-1753-08	690392	45362393	17663127	992	141418											
SULF2	55959	broad.mit.edu	37	chr20	46307517	46307517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtccaggatggtgggggCcaggtcaatgttgaggacga	17	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46307517	A	A	46307517	3	1	172	1	0	0	0	0	1	0	0	0	15489	739	26	3	1572	3	SULF2	20	46307517	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	945124	46307517	16718003	993	141419											
SULF2	55959	broad.mit.edu	37	chr20	46313277	46313277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgggccccgtgtagcgCatgatccagtgtttgtccgg	13	11	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46313277	A	A	46313277	3	1	172	1	0	0	0	0	1	0	0	0	15489	710	25	3	1890	3	SULF2	20	46313277	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	5760	46313277	16712243	994	141420											
CASS4	57091	broad.mit.edu	37	chr20	55027266	55027266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagtggaacagcagaacaCcaagcccaatatttatgaca	8	11	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55027266	A	A	55027266	3	1	172	1	0	0	0	0	1	0	0	0	2709	507	18	3	1052	3	CASS4	20	55027266	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	8713989	55027266	7998254	995	141421											
GNAS	2778	broad.mit.edu	37	chr20	57485266	57485266	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagaagcaagaaaaacgcActcccactaattctcatatg	6	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57485266	T	T	57485266	1	4	172	0	1	0	0	0	0	0	0	0	6574	174	6	5		5	GNAS	20	57485266	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2458000	57485266	5540254	996	141422											
HRH3	11255	broad.mit.edu	37	chr20	60791902	60791902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggatggctggtccgtaCagcaggaaggccagcaccca	13	13	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60791902	A	A	60791902	2	1	172	1	0	0	0	0	0	0	0	1	7424	465	17	3		3	HRH3	20	60791902	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	3306636	60791902	2233618	997	141423											
COL9A3	1299	broad.mit.edu	37	chr20	61459170	61459170	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgggggtggcccctgccGctgcccaccatagctccttg	14	16	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61459170	A	A	61459170	1	1	172	0	1	0	0	0	0	0	0	0	3741	1102	38	4		4	COL9A3	20	61459170	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	667268	61459170	1566350	998	141424											
COL20A1	57642	broad.mit.edu	37	chr20	61957095	61957095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccggctctgggcttggagGgttctgtcagggtggtagag	19	7	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61957095	T	T	61957095	1	4	172	0	1	0	0	0	0	0	0	0	3711	1247	43	2		2	COL20A1	20	61957095	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	497925	61957095	1068425	999	141425											
CHRNA4	1137	broad.mit.edu	37	chr20	61981097	61981097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgacaggggcaggtgcgGgggcggcgctttggtgctgc	22	10	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61981097	T	T	61981097	3	4	172	1	0	0	0	0	1	0	0	0	3416	1232	43	2	225	2	CHRNA4	20	61981097	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	24002	61981097	1044423	1000	141426											
TPTE	7179	broad.mit.edu	37	chr21	10914577	10914577	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaatagtcacttatttggtCttgcatggattttgtctttg	8	6	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10914577	A	A	10914577	1	1	172	0	1	0	0	0	0	0	0	0	16554	928	32	3		3	TPTE	21	10914577	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08		10914577	37215318	1001	141427											
TPTE	7179	broad.mit.edu	37	chr21	10920046	10920046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcaatctgaacccacaCccctaaaaaaactcccattt	5	14	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10920046	A	A	10920046	1	1	172	0	1	0	0	0	0	0	0	0	16554	522	18	3		3	TPTE	21	10920046	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	5469	10920046	37209849	1002	141428											
TPTE	7179	broad.mit.edu	37	chr21	10922029	10922029	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagttagttcaagaacataCgtggtataaaaatacactca	7	6	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10922029	G	G	10922029	1	3	172	0	1	0	0	0	0	0	0	0	16554	551	19	4		4	TPTE	21	10922029	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1983	10922029	37207866	1003	141429											
BAGE2	85319	broad.mit.edu	37	chr21	11049568	11049568	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagtagtacaaaagaactGatctaagaggtctcccgggc	10	9	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11049568	T	T	11049568	1	4	172	0	1	0	0	0	0	0	0	0	1297	1305	45	3		3	BAGE2	21	11049568	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	127539	11049568	37080327	1004	141430											
HSPA13	6782	broad.mit.edu	37	chr21	15755506	15755506	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccgcccccactcctcccGgcagtcccgcagccccctgg	9	24	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15755506	T	T	15755506	1	4	172	0	1	0	0	0	0	0	0	0	7475	1131	39	1		1	HSPA13	21	15755506	5'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	4705938	15755506	32374389	1005	141431											
CXADR	1525	broad.mit.edu	37	chr21	18933874	18933874	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattcgttctcttattaaccAcccaaagcatctttcttagg	4	12	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18933874	T	T	18933874	1	4	172	0	1	0	0	0	0	0	0	0	4109	174	6	5		5	CXADR	21	18933874	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	3178368	18933874	29196021	1006	141432											
JAM2	58494	broad.mit.edu	37	chr21	27084631	27084631	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgataatgtagtaaatattgTcttttatattccacaaacag	5	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27084631	A	A	27084631	1	1	172	0	1	0	0	0	0	0	0	0	8013	1682	58	5		5	JAM2	21	27084631	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	8150757	27084631	21045264	1007	141433											
KRTAP19-4	337971	broad.mit.edu	37	chr21	31869431	31869431	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgccatagtagctcatggCgtcaggagtggtgagttgtt	15	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31869431	A	A	31869431	1	1	172	0	1	0	0	0	0	0	0	0	8602	783	27	3		3	KRTAP19-4	21	31869431	5'Flank	SNP	C	TCGA-50-6594-01A-11D-1753-08	4784800	31869431	16260464	1008	141434											
KRTAP6-3	337968	broad.mit.edu	37	chr21	31964888	31964888	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggctgtggctatgggtgcTgtggctacggaggcctgggc	20	9	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31964888	A	A	31964888	3	1	172	1	0	0	0	0	1	0	0	0	8643	1580	55	5	126	5	KRTAP6-3	21	31964888	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	95457	31964888	16165007	1009	141435											
KRTAP6-2	337967	broad.mit.edu	37	chr21	31971153	31971153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtatccacagcacccatagCcatggtcgccgtagtagttt	9	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31971153	A	A	31971153	3	1	172	1	0	0	0	0	1	0	0	0	8642	739	26	3	150	3	KRTAP6-2	21	31971153	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	6265	31971153	16158742	1010	141436											
TIAM1	7074	broad.mit.edu	37	chr21	32513557	32513557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggtcttgatggccactGgaagaaaacaggttgtgaaa	12	6	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32513557	T	T	32513557	1	4	172	0	1	0	0	0	0	0	0	0	16013	1363	47	2		2	TIAM1	21	32513557	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	542404	32513557	15616338	1011	141437											
MRPS6	64968	broad.mit.edu	37	chr21	35514622	35514622	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagttgatgtctgtctaGgaagagtaaaatggaaacac	12	4	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35514622	C	C	35514622	1	2	172	0	1	0	0	0	0	0	0	0	9941	1015	35	4		4	MRPS6	21	35514622	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	3001065	35514622	12615273	1012	141438											
MORC3	23515	broad.mit.edu	37	chr21	37728869	37728870	+	Intron	INS	-	TTATC	TTATC													attactagattatttatgatINSttatgtttgaaaagaatttt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTATC	37728870	TTATC	TTATC	37728869	6	5	172	0	1	1	1	0	0	0	0	0	9797	1508	52	0		0	MORC3	21	37728869	Intron	INS	-	TCGA-50-6594-01A-11D-1753-08	2214247	37728869	10401026	1013	141439											
BRWD1	54014	broad.mit.edu	37	chr21	40610526	40610526	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgaaggggggaaaaaaatCttgatccctgaagttaaaca	11	5	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40610526	A	A	40610526	1	1	172	0	1	0	0	0	0	0	0	0	1534	928	32	3		3	BRWD1	21	40610526	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2881657	40610526	7519369	1014	141440											
IGSF5	150084	broad.mit.edu	37	chr21	41165450	41165450	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgactctaaaattgttcTtctgttgcagacaccgcttc	6	10	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41165450	C	C	41165450	1	2	172	0	1	0	0	0	0	0	0	0	7672	1624	56	5		5	IGSF5	21	41165450	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	554924	41165450	6964445	1015	141441											
UBASH3A	53347	broad.mit.edu	37	chr21	43857596	43857596	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctttttcactattttccAggggacgcgctactggacag	10	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43857596	T	T	43857596	5	4	172	1	0	0	0	0	0	0	1	0	16965	202	7	5	1434	5	UBASH3A	21	43857596	Splice_Site	SNP	A	TCGA-50-6594-01A-11D-1753-08	2692146	43857596	4272299	1016	141442											
PKNOX1	5316	broad.mit.edu	37	chr21	44430034	44430034	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaattgcatactttcaacGggtggaccgtgtggcgtgtg	14	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44430034	T	T	44430034	1	4	172	0	1	0	0	0	0	0	0	0	12077	1131	39	1		1	PKNOX1	21	44430034	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	572438	44430034	3699861	1017	141443											
CBS	875	broad.mit.edu	37	chr21	44483093	44483093	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaccgtggggatgaagtcGtagccgatcccttccacctc	11	14	0	1	rs149809170		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44483093	A	A	44483093	2	1	172	1	0	0	0	0	0	0	0	1	2737	1140	40	4		4	CBS	21	44483093	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	53059	44483093	3646802	1018	141444											
TRPM2	7226	broad.mit.edu	37	chr21	45819245	45819245	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgctcacccgcgtgtccgAggcctgggggaagaccacct	13	15	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45819245	T	T	45819245	3	4	172	1	0	0	0	0	1	0	0	0	16711	304	11	5	2183	5	TRPM2	21	45819245	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1336152	45819245	2310650	1019	141445											
TRPM2	7226	broad.mit.edu	37	chr21	45821482	45821482	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctctctgaggggcacggggGatcacggggtggccaaagcc	17	11	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45821482	T	T	45821482	1	4	172	0	1	0	0	0	0	0	0	0	16711	1189	41	3		3	TRPM2	21	45821482	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2237	45821482	2308413	1020	141446											
C21orf29	54084	broad.mit.edu	37	chr21	45941973	45941973	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggttccacttgtagatgacActgtcgatgttgtggttgtc	13	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45941973	C	C	45941973	3	2	172	1	0	0	0	0	1	0	0	0	2146	156	6	5	666	5	C21orf29	21	45941973	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	120491	45941973	2187922	1021	141447											
ITGB2	3689	broad.mit.edu	37	chr21	46321680	46321680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaggggctggggaggtgGcaggctgggcccaggtggga	24	6	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46321680	T	T	46321680	1	4	172	0	1	0	0	0	0	0	0	0	7964	1218	42	3		3	ITGB2	21	46321680	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	379707	46321680	1808215	1022	141448											
MCM3AP	8888	broad.mit.edu	37	chr21	47704209	47704209	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataaagtacctccccggggtCgattcaggcggacaggtcgt	13	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47704209	T	T	47704209	3	4	172	1	0	0	0	0	1	0	0	0	9481	884	31	4	5062	4	MCM3AP	21	47704209	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1382529	47704209	425686	1023	141449											
PCNT	5116	broad.mit.edu	37	chr21	47754257	47754257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgggaagggcctgagGctgcagccctagaccttgct	16	11	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47754257	T	T	47754257	1	4	172	0	1	0	0	0	0	0	0	0	11684	1218	42	3		3	PCNT	21	47754257	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	50048	47754257	375638	1024	141450											
SLC25A18	83733	broad.mit.edu	37	chr22	18064010	18064010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtctccaggcagcgcgCgtgagcctgggggctgggga	18	12	1	1	rs140144096	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18064010	A	A	18064010	1	1	172	0	1	0	0	0	0	0	0	0	14594	783	27	3		3	SLC25A18	22	18064010	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08		18064010	33240556	1025	141451											
C22orf25	128989	broad.mit.edu	37	chr22	20052235	20052235	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggggccctgccttgagGggcactgtggacaggaaacc	17	11	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20052235	T	T	20052235	1	4	172	0	1	0	0	0	0	0	0	0	2161	1247	43	2		2	C22orf25	22	20052235	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	1988225	20052235	31252331	1026	141452											
MYO18B	84700	broad.mit.edu	37	chr22	26400716	26400716	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcctcagctcccagccagAgggcagcctgcagtcctggt	11	16	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26400716	T	T	26400716	3	4	172	1	0	0	0	0	1	0	0	0	10160	304	11	5	6527	5	MYO18B	22	26400716	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	6348481	26400716	24903850	1027	141453											
MN1	4330	broad.mit.edu	37	chr22	28194003	28194003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgaaggtcacgttgagGttgggggccccgaggctggc	18	8	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28194003	T	T	28194003	3	4	172	1	0	0	0	0	1	0	0	0	9767	1252	44	3	1441	3	MN1	22	28194003	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1793287	28194003	23110563	1028	141454											
C22orf42	150297	broad.mit.edu	37	chr22	32550130	32550130	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaatgaaataaatgaagaAcatgacatagcatttactga	6	5	0	5			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32550130	T	T	32550130	1	4	172	0	1	0	0	0	0	0	0	0	2171	58	2	5		5	C22orf42	22	32550130	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	4356127	32550130	18754436	1029	141455											
CACNA1I	8911	broad.mit.edu	37	chr22	40043907	40043907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgcatgggcctgcctccCctggaaatgatcactcggga	11	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40043907	A	A	40043907	3	1	172	1	0	0	0	0	1	0	0	0	2572	623	22	2	1577	2	CACNA1I	22	40043907	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	7493777	40043907	11260659	1030	141456											
MEI1	150365	broad.mit.edu	37	chr22	42095530	42095530	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgccgcctcagctgagGgcaagcgaggagatggctgt	17	9	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42095530	A	A	42095530	1	1	172	0	1	0	0	0	0	0	0	0	9558	1247	43	4		4	MEI1	22	42095530	5'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	2051623	42095530	9209036	1031	141457											
MEI1	150365	broad.mit.edu	37	chr22	42172324	42172324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaaagccagtcgagaatGggcatctctacccttgttag	10	11	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42172324	T	T	42172324	1	4	172	0	1	0	0	0	0	0	0	0	9558	1363	47	2		2	MEI1	22	42172324	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	76794	42172324	9132242	1032	141458											
WBP2NL	164684	broad.mit.edu	37	chr22	42336238	42336238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgcctacttccttcaGgtctttatttatttagaagt	6	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42336238	A	A	42336238	1	1	172	0	1	0	0	0	0	0	0	0	17387	1015	35	4		4	WBP2NL	22	42336238	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	163914	42336238	8968328	1033	141459											
TTLL12	23170	broad.mit.edu	37	chr22	43565474	43565474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccgggacccgccccacCggcctgcgatggtgtgcagg	15	17	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43565474	A	A	43565474	1	1	172	0	1	0	0	0	0	0	0	0	16851	667	23	1		1	TTLL12	22	43565474	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1229236	43565474	7739092	1034	141460											
PHF21B	112885	broad.mit.edu	37	chr22	45309683	45309683	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgagcagggcctgggccctCcggagaggcctgtcctacct	14	15	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45309683	A	A	45309683	1	1	172	0	1	0	0	0	0	0	0	0	11929	870	30	3		3	PHF21B	22	45309683	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1744209	45309683	5994883	1035	141461											
C22orf9	23313	broad.mit.edu	37	chr22	45601987	45601987	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcactgtagcctcaacctCctgggctcaaatgatcctct	7	15	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45601987	A	A	45601987	1	1	172	0	1	0	0	0	0	0	0	0	2173	870	30	3		3	C22orf9	22	45601987	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	292304	45601987	5702579	1036	141462											
MAPK11	5600	broad.mit.edu	37	chr22	50705474	50705474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgccagcccaaaatccaGgatctggggcgaccacgtgg	14	14	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50705474	T	T	50705474	3	4	172	1	0	0	0	0	1	0	0	0	9365	991	35	2	619	2	MAPK11	22	50705474	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	5103487	50705474	599092	1037	141463											
ASMT	438	broad.mit.edu	37	chrX	1748942	1748942	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatgctttgacatgtgcggCcttactggtcttagaggaat	12	7	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1748942	G	G	1748942	1	3	172	0	1	0	0	0	0	0	0	0	1049	754	26	4		4	ASMT	23	1748942	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08		1748942	153521618	1038	141464											
ZBED1	9189	broad.mit.edu	37	chrX	2407837	2407838	+	Frame_Shift_Ins	INS	-	A	A													agcgcgacagcagcgcccccINSagcttcgggagctggaaggc							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2407838	A	A	2407837	7	5	172	1	0	1	1	0	0	0	0	0	17644	581	21	0	1164	0	ZBED1	23	2407837	Frame_Shift_Ins	INS	-	TCGA-50-6594-01A-11D-1753-08	658895	2407837	152862723	1039	141465											
MXRA5	25878	broad.mit.edu	37	chrX	3247989	3247989	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtcaatataagaaccttgGagaatggaacgtctccaaaa	8	7	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3247989	A	A	3247989	1	1	172	0	1	0	0	0	0	0	0	0	10097	1189	41	4		4	MXRA5	23	3247989	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	840152	3247989	152022571	1040	141466											
FRMPD4	9758	broad.mit.edu	37	chrX	12736044	12736044	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaagcaagctggccgaTggtgaggggaaggcaccccc	16	10	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12736044	C	C	12736044	2	2	172	1	0	0	0	0	0	0	0	1	6119	1461	51	5		5	FRMPD4	23	12736044	Silent	SNP	T	TCGA-50-6594-01A-11D-1753-08	9488055	12736044	142534516	1041	141467											
DMD	1756	broad.mit.edu	37	chrX	33229438	33229438	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaaagcattttgaaaaGtgtatatcaaggcagcgata	8	8	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33229438	T	T	33229438	1	4	172	0	1	0	0	0	0	0	0	0	4620	1044	36	3		3	DMD	23	33229438	5'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	20493394	33229438	122041122	1042	141468											
CYBB	1536	broad.mit.edu	37	chrX	37658310	37658310	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaataaaggaatgcccaatCcctcagtttgctggaaaccc	7	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37658310	T	T	37658310	2	4	172	1	0	0	0	0	0	0	0	1	4166	845	30	4		4	CYBB	23	37658310	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	4428872	37658310	117612250	1043	141469											
SRPX	8406	broad.mit.edu	37	chrX	38080652	38080652	+	5'Flank	DEL	G	-	-													cccccgttactggcagagcaGggactggaacttaggtgtgt							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38080652	-	-	38080652	6	5	172	0	1	1	0	1	0	0	0	0	15282	1015	35	0		0	SRPX	23	38080652	5'Flank	DEL	G	TCGA-50-6594-01A-11D-1753-08	422342	38080652	117189908	1044	141470											
USP9X	8239	broad.mit.edu	37	chrX	41088907	41088907	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaccatatactggcaatcctCagtacacttacaacaattgg	6	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41088907	T	T	41088907	4	4	172	1	0	0	0	0	0	1	0	0	17217	827	29	4	7472	4	USP9X	23	41088907	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3008255	41088907	114181653	1045	141471											
EFHC2	80258	broad.mit.edu	37	chrX	44094637	44094637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcctgtccaagtcaacaCatttgtctgtgactagtttt	6	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44094637	A	A	44094637	3	1	172	1	0	0	0	0	1	0	0	0	4987	478	17	3	940	3	EFHC2	23	44094637	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3005730	44094637	111175923	1046	141472											
RBM10	8241	broad.mit.edu	37	chrX	47039450	47039450	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatcgtggtgagggcggCacagttgggggccgggcagc	19	11	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47039450	A	A	47039450	1	1	172	0	1	0	0	0	0	0	0	0	13219	725	25	3		3	RBM10	23	47039450	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2944813	47039450	108231110	1047	141473											
USP11	8237	broad.mit.edu	37	chrX	47092493	47092494	+	Missense_Mutation	DNP	GG	TT	TT													gctgcggcggctgtggcggcGgcagcggcggtgactgagga							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	47092494	TT	TT	47092493	3	4	172	1	0	0	0	0	1	0	0	0	17168	1103	39	1	182	1	USP11	23	47092493	Missense_Mutation	DNP	GG	TCGA-50-6594-01A-11D-1753-08	53043	47092493	108178067	1048	141474											
ELK1	2002	broad.mit.edu	37	chrX	47497343	47497343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggaagccgcatggccgCccgcctgccctgcggtgtcc	15	17	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47497343	A	A	47497343	3	1	172	1	0	0	0	0	1	0	0	0	5101	739	26	3	405	3	ELK1	23	47497343	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	404850	47497343	107773217	1049	141475											
SUV39H1	6839	broad.mit.edu	37	chrX	48558670	48558670	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcttggccaactacctGgtgcagaaggccaagcagag	12	12	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48558670	A	A	48558670	2	1	172	1	0	0	0	0	0	0	0	1	15530	1335	47	4		4	SUV39H1	23	48558670	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	1061327	48558670	106711890	1050	141476											
SLC35A2	7355	broad.mit.edu	37	chrX	48762039	48762039	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgactttggcagaaagggctCcgtgatgaggtctccacggt	14	9	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48762039	A	A	48762039	4	1	172	1	0	0	0	0	0	1	0	0	14685	864	30	3	207	3	SLC35A2	23	48762039	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	203369	48762039	106508521	1051	141477											
CCDC120	90060	broad.mit.edu	37	chrX	48920019	48920019	+	Missense_Mutation	SNP	G	T	T													ctgccctgttcggagaggctGccccccaggtgaagtcagag							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48920019	T	T	48920019	3	4	172	1	0	0	0	0	1	0	0	0	2782	1319	46	3	76	3	CCDC120	23	48920019	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	157980	48920019	106350541	1052	141478	609	2									
CCDC120	90060	broad.mit.edu	37	chrX	48920024	48920025	+	Frame_Shift_Ins	INS	-	T	T													tgttcggagaggctgcccccINScaggtgaagtcagagcgtct							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48920025	T	T	48920024	7	5	172	1	0	1	1	0	0	0	0	0	2782	610	22	0	81	0	CCDC120	23	48920024	Frame_Shift_Ins	INS	-	TCGA-50-6594-01A-11D-1753-08	5	48920024	106350536	1053	141479	609	2									
GPKOW	27238	broad.mit.edu	37	chrX	48972137	48972137	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtatctgggcttaggacatCttcaattatcatctggggat	11	7	5	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48972137	A	A	48972137	3	1	172	1	0	0	0	0	1	0	0	0	6678	913	32	3	289	3	GPKOW	23	48972137	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	52113	48972137	106298423	1054	141480											
SYP	6855	broad.mit.edu	37	chrX	49048117	49048117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggtgccggttgtttctcgGgggcgccgggaggcgcgcgc	21	12	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49048117	T	T	49048117	3	4	172	1	0	0	0	0	1	0	0	0	15580	1232	43	2	226	2	SYP	23	49048117	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	75980	49048117	106222443	1055	141481											
MAGED1	9500	broad.mit.edu	37	chrX	51639712	51639712	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagaccccaccagcacgtCagagccctccagctaggcag	11	17	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51639712	A	A	51639712	3	1	172	1	0	0	0	0	1	0	0	0	9275	827	29	3	1143	3	MAGED1	23	51639712	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	2591595	51639712	103630848	1056	141482											
SSX7	280658	broad.mit.edu	37	chrX	52682698	52682698	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtaatgacatggggcgaAgtcagatgaaaatagggaac	14	4	1	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52682698	C	C	52682698	1	2	172	0	1	0	0	0	0	0	0	0	15327	87	3	5		5	SSX7	23	52682698	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	1042986	52682698	102587862	1057	141483											
TSPYL2	64061	broad.mit.edu	37	chrX	53114342	53114342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgttcctgggtgcgtggGgaattaagaggaggatctgg	18	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53114342	T	T	53114342	1	4	172	0	1	0	0	0	0	0	0	0	16785	1247	43	2		2	TSPYL2	23	53114342	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	431644	53114342	102156218	1058	141484											
HUWE1	10075	broad.mit.edu	37	chrX	53561453	53561453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtaagaggaccatatgaGgagggatgccagcagcagct	16	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53561453	T	T	53561453	1	4	172	0	1	0	0	0	0	0	0	0	7531	1015	35	2		2	HUWE1	23	53561453	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	447111	53561453	101709107	1059	141485											
GNL3L	54552	broad.mit.edu	37	chrX	54567837	54567837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaggtaagagtgcagccCttgcccctgggtaggtttgc	13	10	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54567837	A	A	54567837	1	1	172	0	1	0	0	0	0	0	0	0	6602	696	24	2		2	GNL3L	23	54567837	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1006384	54567837	100702723	1060	141486											
ITIH5L	347365	broad.mit.edu	37	chrX	54817378	54817378	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgctcagcctcttcaccaAttggccaggcctcaggctca	8	15	5	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54817378	G	G	54817378	2	3	172	1	0	0	0	0	0	0	0	1	7978	98	4	5		5	ITIH5L	23	54817378	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	249541	54817378	100453182	1061	141487											
PFKFB1	5207	broad.mit.edu	37	chrX	54978579	54978579	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcaggagcaagggcagctCaggggctaatggtggtaggg	19	6	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54978579	A	A	54978579	1	1	172	0	1	0	0	0	0	0	0	0	11855	841	29	3		3	PFKFB1	23	54978579	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	161201	54978579	100291981	1062	141488											
ARHGEF9	23229	broad.mit.edu	37	chrX	62875751	62875751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttggtttgttctaaatttGgccaggttatactagtagtc	11	5	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62875751	T	T	62875751	1	4	172	0	1	0	0	0	0	0	0	0	914	1363	47	2		2	ARHGEF9	23	62875751	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	7897172	62875751	92394809	1063	141489											
MSN	4478	broad.mit.edu	37	chrX	64949255	64949255	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctacagccactccattaccCttaaaacctattttttgaga	3	13	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64949255	T	T	64949255	1	4	172	0	1	0	0	0	0	0	0	0	9979	696	24	4		4	MSN	23	64949255	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2073504	64949255	90321305	1064	141490											
AR	367	broad.mit.edu	37	chrX	66765161	66765161	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccagtttgctgctgctgcAgcagcagcagcagcagcagc	13	14	0	0	rs5902610		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66765161	T	T	66765161	3	4	172	1	0	0	0	0	1	0	0	0	838	188	7	5	175	5	AR	23	66765161	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1815906	66765161	88505399	1065	141491											
YIPF6	286451	broad.mit.edu	37	chrX	67738453	67738453	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtaaagaagtgcattcagGattaggggacagggagggca	16	4	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67738453	T	T	67738453	1	4	172	0	1	0	0	0	0	0	0	0	17609	1189	41	3		3	YIPF6	23	67738453	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	973292	67738453	87532107	1066	141492											
STARD8	9754	broad.mit.edu	37	chrX	67938333	67938333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatttctgacactgtggCctcctccagcgaacttgaca	7	15	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67938333	A	A	67938333	3	1	172	1	0	0	0	0	1	0	0	0	15381	739	26	3	1599	3	STARD8	23	67938333	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	199880	67938333	87332227	1067	141493											
AWAT1	158833	broad.mit.edu	37	chrX	69458232	69458232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcacagccctccagcatGggtaggtgttccccacagag	12	14	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69458232	T	T	69458232	3	4	172	1	0	0	0	0	1	0	0	0	1239	1362	47	2	649	2	AWAT1	23	69458232	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1519899	69458232	85812328	1068	141494											
MED12	9968	broad.mit.edu	37	chrX	70341002	70341002	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggccatgttcatgtttcaGgtagagagtagggcatgctg	14	7	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70341002	A	A	70341002	2	1	172	1	0	0	0	0	0	0	0	1	9521	1014	35	4		4	MED12	23	70341002	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	882770	70341002	84929558	1069	141495											
MED12	9968	broad.mit.edu	37	chrX	70352931	70352931	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgtgggatggaaacaCgaagatccctgagctgcata	13	9	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70352931	G	G	70352931	1	3	172	0	1	0	0	0	0	0	0	0	9521	551	19	4		4	MED12	23	70352931	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	11929	70352931	84917629	1070	141496											
ZMYM3	9203	broad.mit.edu	37	chrX	70470376	70470376	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgaggcagccccttgcGctgataggcagtctgcccct	13	14	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70470376	A	A	70470376	3	1	172	1	0	0	0	0	1	0	0	0	17827	1087	38	4	3235	4	ZMYM3	23	70470376	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	117445	70470376	84800184	1071	141497											
TAF1	6872	broad.mit.edu	37	chrX	70614045	70614045	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaaccagctctcagctttCacgtgaacgggaggaacagg	12	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70614045	T	T	70614045	3	4	172	1	0	0	0	0	1	0	0	0	15632	838	29	4	3502	4	TAF1	23	70614045	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	143669	70614045	84656515	1072	141498											
ERCC6L	54821	broad.mit.edu	37	chrX	71425016	71425016	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacgctttacaagagtctCatagtcatttgtagcctctg	7	11	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71425016	A	A	71425016	4	1	172	1	0	0	0	0	0	1	0	0	5260	835	29	3	155	3	ERCC6L	23	71425016	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	810971	71425016	83845544	1073	141499											
PHKA1	5255	broad.mit.edu	37	chrX	71877521	71877521	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaaaaaaggtcagcagCttgtacactggtacggccat	10	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71877521	A	A	71877521	1	1	172	0	1	0	0	0	0	0	0	0	11938	812	28	3		3	PHKA1	23	71877521	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	452505	71877521	83393039	1074	141500											
RLIM	51132	broad.mit.edu	37	chrX	73811822	73811822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaacctcctcttccactcCgtgactctgccctttccata	4	18	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73811822	A	A	73811822	3	1	172	1	0	0	0	0	1	0	0	0	13501	652	23	1	550	1	RLIM	23	73811822	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1934301	73811822	81458738	1075	141501											
ATRX	546	broad.mit.edu	37	chrX	76920185	76920185	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccagttctttttttcccttCttctggctcatcatctgaag	5	12	6	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76920185	A	A	76920185	4	1	172	1	0	0	0	0	0	1	0	0	1212	922	32	3	3686	3	ATRX	23	76920185	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3108363	76920185	78350375	1076	141502											
ATRX	546	broad.mit.edu	37	chrX	76939995	76939995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccattattgtggacaactcCtttcgaccaaggttgcgtag	9	10	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76939995	A	A	76939995	3	1	172	1	0	0	0	0	1	0	0	0	1212	680	24	2	6833	2	ATRX	23	76939995	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	19810	76939995	78330565	1077	141503											
MAGT1	84061	broad.mit.edu	37	chrX	77112882	77112882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttctgtcggcgatccacCgggcaatctgctcagctgaa	11	13	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77112882	A	A	77112882	3	1	172	1	0	0	0	0	1	0	0	0	9288	652	23	1	532	1	MAGT1	23	77112882	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	172887	77112882	78157678	1078	141504											
LPAR4	2846	broad.mit.edu	37	chrX	78011509	78011509	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgttcaggtccagatatGgtttctcctataatttttcc	7	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78011509	T	T	78011509	1	4	172	0	1	0	0	0	0	0	0	0	8994	1363	47	2		2	LPAR4	23	78011509	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	898627	78011509	77259051	1079	141505											
BRWD3	254065	broad.mit.edu	37	chrX	79971552	79971552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccctatatgcagatacCtattaaaatagtctcttaac	5	9	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79971552	A	A	79971552	1	1	172	0	1	0	0	0	0	0	0	0	1535	696	24	2		2	BRWD3	23	79971552	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1960043	79971552	75299008	1080	141506											
HDX	139324	broad.mit.edu	37	chrX	83581269	83581269	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaagtatttttgcttttGaatctcgagctcattttcaa	5	6	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83581269	T	T	83581269	3	4	172	1	0	0	0	0	1	0	0	0	7093	1299	45	3	216	3	HDX	23	83581269	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3609717	83581269	71689291	1081	141507											
ZNF711	7552	broad.mit.edu	37	chrX	84525804	84525804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatatcagtgtacagattGtgactttacaactaacaaga	6	6	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84525804	T	T	84525804	3	4	172	1	0	0	0	0	1	0	0	0	18244	1377	48	3	1282	3	ZNF711	23	84525804	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	944535	84525804	70744756	1082	141508											
CHM	1121	broad.mit.edu	37	chrX	85119852	85119852	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaggaagaaaagataaaatCgtttttggaaatcggtttaa	9	3	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85119852	A	A	85119852	1	1	172	0	1	0	0	0	0	0	0	0	3381	899	31	3		3	CHM	23	85119852	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	594048	85119852	70150708	1083	141509											
CHM	1121	broad.mit.edu	37	chrX	85158837	85158837	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttgtttctgcagaaattGaggtgatggtcacatatgcc	10	6	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85158837	A	A	85158837	1	1	172	0	1	0	0	0	0	0	0	0	3381	1305	45	4		4	CHM	23	85158837	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	38985	85158837	70111723	1084	141510											
PCDH11X	27328	broad.mit.edu	37	chrX	91090681	91090681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacaagtccttgacaactGctatgcagttcaagctagtg	8	10	1	1	rs34165727		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91090681	T	T	91090681	3	4	172	1	0	0	0	0	1	0	0	0	11602	1319	46	3	180	3	PCDH11X	23	91090681	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	5931844	91090681	64179879	1085	141511											
PCDH11X	27328	broad.mit.edu	37	chrX	91133455	91133455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataacattgatggagaaatGtgatgttacagaccttggtt	10	5	0	4			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91133455	T	T	91133455	3	4	172	1	0	0	0	0	1	0	0	0	11602	1377	48	3	2222	3	PCDH11X	23	91133455	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	42774	91133455	64137105	1086	141512											
DIAPH2	1730	broad.mit.edu	37	chrX	96171606	96171606	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattattatatttgctgcaTggaaaatgacacttaagaaa	6	4	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96171606	A	A	96171606	1	1	172	0	1	0	0	0	0	0	0	0	4559	1479	51	5		5	DIAPH2	23	96171606	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	5038151	96171606	59098954	1087	141513											
PCDH19	57526	broad.mit.edu	37	chrX	99662981	99662981	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctagcgcagtgattcggaaGctgtagtgcgactgcgtctc	13	10	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99662981	C	C	99662981	3	2	172	1	0	0	0	0	1	0	0	0	11608	962	34	4	2855	4	PCDH19	23	99662981	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3491375	99662981	55607579	1088	141514											
CSTF2	1478	broad.mit.edu	37	chrX	100087795	100087795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgagagccgaggaccaccCccacatgaactgaggggagg	14	12	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100087795	A	A	100087795	2	1	172	1	0	0	0	0	0	0	0	1	4018	610	22	2		2	CSTF2	23	100087795	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	424814	100087795	55182765	1089	141515											
NOX1	27035	broad.mit.edu	37	chrX	100105367	100105367	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaaactttggatgggtgCataacaacctgtgaatgaag	10	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100105367	T	T	100105367	3	4	172	1	0	0	0	0	1	0	0	0	10651	710	25	4	808	4	NOX1	23	100105367	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	17572	100105367	55165193	1090	141516											
DRP2	1821	broad.mit.edu	37	chrX	100505910	100505911	+	Missense_Mutation	DNP	CC	TA	TA													cttcttgtttccgtagagcaCcgggaagccagtcattgaag							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	100505911	TA	TA	100505910	3	4	172	1	0	0	0	0	1	0	0	0	4804	507	18	4	1757	4	DRP2	23	100505910	Missense_Mutation	DNP	CC	TCGA-50-6594-01A-11D-1753-08	400543	100505910	54764650	1091	141517											
DRP2	1821	broad.mit.edu	37	chrX	100509421	100509421	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctcctcctcagaccacatCcagtgagaacatgagggact	9	13	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100509421	T	T	100509421	3	4	172	1	0	0	0	0	1	0	0	0	4804	855	30	4	2047	4	DRP2	23	100509421	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	3511	100509421	54761139	1092	141518											
TMSB15A	11013	broad.mit.edu	37	chrX	101769792	101769792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagttttcccccccattcCtattaagacttatgtgagaa	5	11	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101769792	A	A	101769792	1	1	172	0	1	0	0	0	0	0	0	0	16378	696	24	2		2	TMSB15A	23	101769792	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1260371	101769792	53500768	1093	141519											
GPRASP2	114928	broad.mit.edu	37	chrX	101969960	101969960	+	Frame_Shift_Del	DEL	A	-	-													caaggcccaaaactgagaccAagtctgtgcctgcggcaagg							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101969960	-	-	101969960	7	5	172	1	0	1	0	1	0	0	0	0	6789	131	5	0	165	0	GPRASP2	23	101969960	Frame_Shift_Del	DEL	A	TCGA-50-6594-01A-11D-1753-08	200168	101969960	53300600	1094	141520											
BHLHB9	80823	broad.mit.edu	37	chrX	102003868	102003868	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgttaagacttcgacctagGacacattgagaaccaaggcc	10	10	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102003868	C	C	102003868	1	2	172	0	1	0	0	0	0	0	0	0	1426	1189	41	4		4	BHLHB9	23	102003868	5'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	33908	102003868	53266692	1095	141521											
NXF3	56000	broad.mit.edu	37	chrX	102335190	102335190	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaaagtagggaggtggCacagaaaattacggaaaagg	15	4	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102335190	T	T	102335190	1	4	172	0	1	0	0	0	0	0	0	0	10880	725	25	4		4	NXF3	23	102335190	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	331322	102335190	52935370	1096	141522											
MORF4L2	9643	broad.mit.edu	37	chrX	102931732	102931732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgcttgttctttctgGtcttcctcacggatcctgaa	7	12	6	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102931732	T	T	102931732	3	4	172	1	0	0	0	0	1	0	0	0	9801	1261	44	3	646	3	MORF4L2	23	102931732	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	596542	102931732	52338828	1097	141523											
TMSB15B	286527	broad.mit.edu	37	chrX	103216431	103216431	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctattctagcattctcaGaaggatcccatccgttagac	6	12	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103216431	T	T	103216431	1	4	172	0	1	0	0	0	0	0	0	0	16379	957	33	3		3	TMSB15B	23	103216431	5'Flank	SNP	G	TCGA-50-6594-01A-11D-1753-08	284699	103216431	52054129	1098	141524											
MCART6	401612	broad.mit.edu	37	chrX	103349150	103349150	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtagatcaggagcagctttCggccccgagtgttccataca	12	11	1	1	rs12862951		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103349150	A	A	103349150	3	1	172	1	0	0	0	0	1	0	0	0	9464	884	31	3	136	3	MCART6	23	103349150	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	132719	103349150	51921410	1099	141525											
SERPINA7	6906	broad.mit.edu	37	chrX	105280839	105280839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagctgcagaaatgctcaCaggggaaaagaagatgttct	11	7	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105280839	A	A	105280839	3	1	172	1	0	0	0	0	1	0	0	0	14207	478	17	3	1052	3	SERPINA7	23	105280839	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1931689	105280839	49989721	1100	141526											
SERPINA7	6906	broad.mit.edu	37	chrX	105281019	105281019	+	Frame_Shift_Del	DEL	C	-	-													tgtagcatgaagcccaagtaCcaagagaaccagatacagga							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105281019	-	-	105281019	7	5	172	1	0	1	0	1	0	0	0	0	14207	507	18	0	1232	0	SERPINA7	23	105281019	Frame_Shift_Del	DEL	C	TCGA-50-6594-01A-11D-1753-08	180	105281019	49989541	1101	141527											
RNF128	79589	broad.mit.edu	37	chrX	106034405	106034405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcgagaccgcatcatctgGatatgcttcagtacagggaa	11	10	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106034405	T	T	106034405	3	4	172	1	0	0	0	0	1	0	0	0	13547	1174	41	3	1526	3	RNF128	23	106034405	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	753386	106034405	49236155	1102	141528											
GUCY2F	2986	broad.mit.edu	37	chrX	108619476	108619476	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagcattcaggttggctcaGaaattgcctcaccactccct	7	13	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108619476	T	T	108619476	1	4	172	0	1	0	0	0	0	0	0	0	6963	957	33	3		3	GUCY2F	23	108619476	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2585071	108619476	46651084	1103	141529											
GUCY2F	2986	broad.mit.edu	37	chrX	108631889	108631889	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaggcatctccaatggtctCtacctgggaattaggaaaaa	10	8	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108631889	A	A	108631889	5	1	172	1	0	0	0	0	0	0	1	0	6963	927	32	3	561	3	GUCY2F	23	108631889	Splice_Site	SNP	C	TCGA-50-6594-01A-11D-1753-08	12413	108631889	46638671	1104	141530											
PAK3	5063	broad.mit.edu	37	chrX	110435808	110435808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaattctggtcatgagGgaaaataagaaccctaatat	8	5	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110435808	T	T	110435808	3	4	172	1	0	0	0	0	1	0	0	0	11496	1223	43	2	1104	2	PAK3	23	110435808	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1803919	110435808	44834752	1105	141531											
PAK3	5063	broad.mit.edu	37	chrX	110439861	110439861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttaccttaatgaaaatcCactcagggtaagtcagaaga	7	10	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110439861	A	A	110439861	3	1	172	1	0	0	0	0	1	0	0	0	11496	594	21	2	1562	2	PAK3	23	110439861	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	4053	110439861	44830699	1106	141532											
CAPN6	827	broad.mit.edu	37	chrX	110490045	110490045	+	Intron	DEL	C	-	-													ctcagtgagattagcctttgCccagtgacatccagatctaa							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110490045	-	-	110490045	6	5	172	0	1	1	0	1	0	0	0	0	2656	754	26	0		0	CAPN6	23	110490045	Intron	DEL	C	TCGA-50-6594-01A-11D-1753-08	50184	110490045	44780515	1107	141533											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698205	111698205	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtgactacctacttgacAgctctccaaatctctaatcc	5	14	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111698205	T	T	111698205	2	4	172	1	0	0	0	0	0	0	0	1	17710	175	7	5		5	ZCCHC16	23	111698205	Silent	SNP	A	TCGA-50-6594-01A-11D-1753-08	1208160	111698205	43572355	1108	141534											
HTR2C	3358	broad.mit.edu	37	chrX	113865275	113865275	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctacagcactgccaagtgaCccattgggctccatcttgac	8	14	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113865275	G	G	113865275	1	3	172	0	1	0	0	0	0	0	0	0	7513	522	18	4		4	HTR2C	23	113865275	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2167070	113865275	41405285	1109	141535											
LRCH2	57631	broad.mit.edu	37	chrX	114357602	114357602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaattttccaagttaaacCcatttccacaaagcagatct	3	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114357602	A	A	114357602	1	1	172	0	1	0	0	0	0	0	0	0	9020	638	22	2		2	LRCH2	23	114357602	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	492327	114357602	40912958	1110	141536											
CXorf61	203413	broad.mit.edu	37	chrX	115593934	115593934	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attcaaatctcccttacattCaccattacctgaaagcggcg	5	13	3	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115593934	G	G	115593934	1	3	172	0	1	0	0	0	0	0	0	0	4149	841	29	4		4	CXorf61	23	115593934	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1236332	115593934	39676626	1111	141537											
DOCK11	139818	broad.mit.edu	37	chrX	117739208	117739208	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttaattttagtgtttgcAtgccatggagatccaagtca	9	7	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117739208	T	T	117739208	3	4	172	1	0	0	0	0	1	0	0	0	4726	217	8	5	2664	5	DOCK11	23	117739208	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	2145274	117739208	37531352	1112	141538											
DOCK11	139818	broad.mit.edu	37	chrX	117770346	117770346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaataaagtatcacctcaGgagctcataaacattcttat	6	8	4	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117770346	T	T	117770346	3	4	172	1	0	0	0	0	1	0	0	0	4726	991	35	2	4066	2	DOCK11	23	117770346	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	31138	117770346	37500214	1113	141539											
DOCK11	139818	broad.mit.edu	37	chrX	117782933	117782933	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcagcatttttcaaaggaaGagtaaacatgtgtgctgcat	9	6	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117782933	T	T	117782933	3	4	172	1	0	0	0	0	1	0	0	0	4726	942	33	3	4586	3	DOCK11	23	117782933	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	12587	117782933	37487627	1114	141540											
LONRF3	79836	broad.mit.edu	37	chrX	118124489	118124489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttaccacttgcatctttcGacgcatctgaccttgaatgc	7	12	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118124489	T	T	118124489	3	4	172	1	0	0	0	0	1	0	0	0	8983	1058	37	3	1399	3	LONRF3	23	118124489	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	341556	118124489	37146071	1115	141541											
UBE2A	7319	broad.mit.edu	37	chrX	118708874	118708874	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcccgaaggttgcaggagGatcctccagccggagtcagc	13	13	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118708874	T	T	118708874	3	4	172	1	0	0	0	0	1	0	0	0	16970	1174	41	3	61	3	UBE2A	23	118708874	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	584385	118708874	36561686	1116	141542											
ZBTB33	10009	broad.mit.edu	37	chrX	119389209	119389209	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaagatatttttattcagCaggaaaatgattcaattttt	8	3	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119389209	T	T	119389209	4	4	172	1	0	0	0	0	0	1	0	0	17662	711	25	4	1941	4	ZBTB33	23	119389209	Nonsense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	680335	119389209	35881351	1117	141543											
THOC2	57187	broad.mit.edu	37	chrX	122771948	122771948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcattctttccttttctgGattagctaaagcttcaatga	5	8	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122771948	T	T	122771948	3	4	172	1	0	0	0	0	1	0	0	0	15988	1174	41	3	2998	3	THOC2	23	122771948	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	3382739	122771948	32498612	1118	141544											
OCRL	4952	broad.mit.edu	37	chrX	128696344	128696344	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaacattaaccttttgtaaCtccccggaactcataggttc	5	11	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128696344	G	G	128696344	1	3	172	0	1	0	0	0	0	0	0	0	10918	580	20	4		4	OCRL	23	128696344	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	5924396	128696344	26574216	1119	141545											
SASH3	54440	broad.mit.edu	37	chrX	128925035	128925035	+	Frame_Shift_Del	DEL	G	-	-													gaggagcatgaacttccggtGctcagccgccaggcatcaac							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128925035	-	-	128925035	7	5	172	1	0	1	0	1	0	0	0	0	13961	1306	46	0	434	0	SASH3	23	128925035	Frame_Shift_Del	DEL	G	TCGA-50-6594-01A-11D-1753-08	228691	128925035	26345525	1120	141546											
UTP14A	10813	broad.mit.edu	37	chrX	129040222	129040222	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcagagaggtgaagggcAacgaggggaggggggattct	20	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129040222	C	C	129040222	1	2	172	0	1	0	0	0	0	0	0	0	17222	145	5	5		5	UTP14A	23	129040222	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	115187	129040222	26230338	1121	141547											
UTP14A	10813	broad.mit.edu	37	chrX	129055587	129055587	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgtgatcaaatggaagaGggaaattcctagtgctgtgg	14	5	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129055587	A	A	129055587	1	1	172	0	1	0	0	0	0	0	0	0	17222	1015	35	4		4	UTP14A	23	129055587	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	15365	129055587	26214973	1122	141548											
UTP14A	10813	broad.mit.edu	37	chrX	129063440	129063440	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcccaaggtcgtcaccaaGccaggccatatcattaaccc	6	16	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129063440	A	A	129063440	2	1	172	1	0	0	0	0	0	0	0	1	17222	962	34	4		4	UTP14A	23	129063440	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	7853	129063440	26207120	1123	141549											
BCORL1	63035	broad.mit.edu	37	chrX	129189788	129189788	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtcggtgcccccaccgcttCctccagcctccttcaataac	7	19	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129189788	A	A	129189788	1	1	172	0	1	0	0	0	0	0	0	0	1392	870	30	3		3	BCORL1	23	129189788	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	126348	129189788	26080772	1124	141550											
AIFM1	9131	broad.mit.edu	37	chrX	129270036	129270036	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccacccagatgttagagCgtgcttgtagctctgcattt	9	10	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129270036	A	A	129270036	3	1	172	1	0	0	0	0	1	0	0	0	426	768	27	3	572	3	AIFM1	23	129270036	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	80248	129270036	26000524	1125	141551											
SLC25A14	9016	broad.mit.edu	37	chrX	129499532	129499532	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttccagctttacatgtgGtttggctggggctctggcct	13	9	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129499532	T	T	129499532	3	4	172	1	0	0	0	0	1	0	0	0	14590	1261	44	3	767	3	SLC25A14	23	129499532	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	229496	129499532	25771028	1126	141552											
IGSF1	3547	broad.mit.edu	37	chrX	130411007	130411007	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccatcaccaatgcccacCgaaatgattagaaagtgagc	7	13	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130411007	A	A	130411007	2	1	172	1	0	0	0	0	0	0	0	1	7666	639	23	1		1	IGSF1	23	130411007	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	911475	130411007	24859553	1127	141553											
IGSF1	3547	broad.mit.edu	37	chrX	130415406	130415406	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaatctggttactgacagtGcttatattgagaaggtgagg	12	5	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130415406	A	A	130415406	1	1	172	0	1	0	0	0	0	0	0	0	7666	1334	46	4		4	IGSF1	23	130415406	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	4399	130415406	24855154	1128	141554											
OR13H1	347468	broad.mit.edu	37	chrX	130678719	130678719	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atacgaattgctatggctatCataaggattcgctcactcca	7	10	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130678719	A	A	130678719	2	1	172	1	0	0	0	0	0	0	0	1	11037	816	29	3		3	OR13H1	23	130678719	Silent	SNP	C	TCGA-50-6594-01A-11D-1753-08	263313	130678719	24591841	1129	141555											
HS6ST2	90161	broad.mit.edu	37	chrX	131762609	131762609	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctttggcatagctgtacAactccatatccagaaaattc	7	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131762609	G	G	131762609	3	3	172	1	0	0	0	0	1	0	0	0	7438	131	5	5	361	5	HS6ST2	23	131762609	Missense_Mutation	SNP	A	TCGA-50-6594-01A-11D-1753-08	1083890	131762609	23507951	1130	141556											
USP26	83844	broad.mit.edu	37	chrX	132160099	132160099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcttcatacaaatctttaGtaggattgataatcctatca	4	7	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132160099	T	T	132160099	3	4	172	1	0	0	0	0	1	0	0	0	17183	1029	36	3	594	3	USP26	23	132160099	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	397490	132160099	23110461	1131	141557											
MOSPD1	56180	broad.mit.edu	37	chrX	134030761	134030761	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaagtggtagatgatttttCtagtaattattcttagctgc	9	4	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134030761	A	A	134030761	1	1	172	0	1	0	0	0	0	0	0	0	9809	928	32	3		3	MOSPD1	23	134030761	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1870662	134030761	21239799	1132	141558											
HTATSF1	27336	broad.mit.edu	37	chrX	135592352	135592352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtcaaatcactgcccagGcatgggatgggactacagat	12	11	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135592352	T	T	135592352	3	4	172	1	0	0	0	0	1	0	0	0	7503	1203	42	3	1066	3	HTATSF1	23	135592352	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	1561591	135592352	19678208	1133	141559											
ARHGEF6	9459	broad.mit.edu	37	chrX	135772674	135772674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatccaagaccttgattcCtctgcaaggccattttggag	9	10	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135772674	T	T	135772674	1	4	172	0	1	0	0	0	0	0	0	0	912	696	24	4		4	ARHGEF6	23	135772674	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	180322	135772674	19497886	1134	141560											
F9	2158	broad.mit.edu	37	chrX	138619418	138619418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctttaaaattttaaagCatccatatatatttatgtat	2	5	1	0	rs4149679	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138619418	A	A	138619418	1	1	172	0	1	0	0	0	0	0	0	0	5397	725	25	3		3	F9	23	138619418	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	2846744	138619418	16651142	1135	141561											
SPANXC	64663	broad.mit.edu	37	chrX	140358427	140358427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatagagtaaagcaccaGcaaacctgcaaggggacaag	11	8	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140358427	T	T	140358427	1	4	172	0	1	0	0	0	0	0	0	0	15103	986	34	3		3	SPANXC	23	140358427	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	1739009	140358427	14912133	1136	141562											
MAGEC1	9947	broad.mit.edu	37	chrX	140995442	140995442	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtatctgctcctcctccaCttctttgagtcttccccaga	6	15	3	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140995442	T	T	140995442	3	4	172	1	0	0	0	0	1	0	0	0	9272	565	20	4	2258	4	MAGEC1	23	140995442	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	637015	140995442	14275118	1137	141563											
MAGEC2	51438	broad.mit.edu	37	chrX	141292017	141292017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaggatgtgggaacacaCctcagggcacagctggcagg	16	9	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141292017	A	A	141292017	1	1	172	0	1	0	0	0	0	0	0	0	9273	522	18	3		3	MAGEC2	23	141292017	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	296575	141292017	13978543	1138	141564											
SLITRK4	139065	broad.mit.edu	37	chrX	142718244	142718244	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatatggcatgttctccagCcaagcttttaagggcaataa	8	8	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142718244	G	G	142718244	3	3	172	1	0	0	0	0	1	0	0	0	14859	740	26	4	1836	4	SLITRK4	23	142718244	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	1426227	142718244	12552316	1139	141565											
UBE2NL	389898	broad.mit.edu	37	chrX	142967583	142967583	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattagcaaatgatgtagtGgagcagtggaagaccaacga	12	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142967583	T	T	142967583	2	4	172	1	0	0	0	0	0	0	0	1	16993	1335	47	2		2	UBE2NL	23	142967583	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	249339	142967583	12302977	1140	141566											
SLITRK2	84631	broad.mit.edu	37	chrX	144903893	144903893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttcttccccctgccccCacctaaggtttgcctgtagg	8	18	1	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144903893	A	A	144903893	1	1	172	0	1	0	0	0	0	0	0	0	14857	609	21	2		2	SLITRK2	23	144903893	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	1936310	144903893	10366667	1141	141567											
FMR1	2332	broad.mit.edu	37	chrX	147030276	147030276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctccagtgaaggtagtcGgctgcgcacgggtaaagatc	13	10	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147030276	T	T	147030276	3	4	172	1	0	0	0	0	1	0	0	0	6018	1116	39	1	1877	1	FMR1	23	147030276	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2126383	147030276	8240284	1142	141568											
AFF2	2334	broad.mit.edu	37	chrX	147891457	147891457	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcgggtgagtttaaacCtttatttttgtgccttttaa	8	6	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147891457	A	A	147891457	1	1	172	0	1	0	0	0	0	0	0	0	357	696	24	2		2	AFF2	23	147891457	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	861181	147891457	7379103	1143	141569											
AFF2	2334	broad.mit.edu	37	chrX	148035035	148035035	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttcacagaccacaggccCttcacctgaactgggctgtt	8	14	2	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148035035	T	T	148035035	1	4	172	0	1	0	0	0	0	0	0	0	357	696	24	4		4	AFF2	23	148035035	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	143578	148035035	7235525	1144	141570											
AFF2	2334	broad.mit.edu	37	chrX	148044222	148044222	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagaagactttatgacacCctacacttcttgtttttcac	6	10	2	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148044222	G	G	148044222	1	3	172	0	1	0	0	0	0	0	0	0	357	638	22	4		4	AFF2	23	148044222	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	9187	148044222	7226338	1145	141571											
IDS	3423	broad.mit.edu	37	chrX	148586553	148586553	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagagatggcagggagggCgtgggcggcacctgtggtcg	21	7	0	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148586553	A	A	148586553	1	1	172	0	1	0	0	0	0	0	0	0	7573	783	27	3		3	IDS	23	148586553	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	542331	148586553	6684007	1146	141572											
PASD1	139135	broad.mit.edu	37	chrX	150773214	150773214	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgacgctacaggtaagagGgcttttgttctttgattact	11	6	1	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150773214	A	A	150773214	1	1	172	0	1	0	0	0	0	0	0	0	11565	1247	43	4		4	PASD1	23	150773214	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	2186661	150773214	4497346	1147	141573											
CNGA2	1260	broad.mit.edu	37	chrX	150907120	150907120	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctacttcttcccatctcTgcctcattgtcacagagcaa	5	15	4	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150907120	A	A	150907120	1	1	172	0	1	0	0	0	0	0	0	0	3629	1595	55	5		5	CNGA2	23	150907120	Intron	SNP	T	TCGA-50-6594-01A-11D-1753-08	133906	150907120	4363440	1148	141574											
MAGEA10	4109	broad.mit.edu	37	chrX	151303053	151303053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagtagtatcatctgtgGtggcaattctgtcctgggct	13	8	3	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151303053	T	T	151303053	3	4	172	1	0	0	0	0	1	0	0	0	9252	1261	44	3	73	3	MAGEA10	23	151303053	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	395933	151303053	3967507	1149	141575											
GABRA3	2556	broad.mit.edu	37	chrX	151336957	151336957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaattcagtgtccttggCcaggttgatgggataggtgg	16	5	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151336957	A	A	151336957	3	1	172	1	0	0	0	0	1	0	0	0	6222	739	26	3	260	3	GABRA3	23	151336957	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	33904	151336957	3933603	1150	141576											
NSDHL	50814	broad.mit.edu	37	chrX	152037712	152037713	+	3'UTR	INS	-	C	C													tgctcagccagtcactccttINScccctgtggattgatgaaat							TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152037713	C	C	152037712	6	5	172	0	1	1	1	0	0	0	0	0	10765	1798	62	0		0	NSDHL	23	152037712	3'UTR	INS	-	TCGA-50-6594-01A-11D-1753-08	700755	152037712	3232848	1151	141577											
BGN	633	broad.mit.edu	37	chrX	152770674	152770674	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggtctcaagttcatgctgGtgatgggggtggggccccta	16	8	2	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152770674	C	C	152770674	1	2	172	0	1	0	0	0	0	0	0	0	1424	1276	44	4		4	BGN	23	152770674	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	732962	152770674	2499886	1152	141578											
ATP2B3	492	broad.mit.edu	37	chrX	152813495	152813495	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgggcccaggccattgaCtgggcgtggaggatgctggg	20	8	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152813495	A	A	152813495	1	1	172	0	1	0	0	0	0	0	0	0	1145	580	20	3		3	ATP2B3	23	152813495	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	42821	152813495	2457065	1153	141579											
PNCK	139728	broad.mit.edu	37	chrX	152938117	152938117	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacgaggtgtgcggagcccCgctcctgggccagcaccacc	13	18	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152938117	T	T	152938117	3	4	172	1	0	0	0	0	1	0	0	0	12240	652	23	4	963	4	PNCK	23	152938117	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	124622	152938117	2332443	1154	141580											
ABCD1	215	broad.mit.edu	37	chrX	153008744	153008744	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaaggcaagatcttccaGgcggccaaggacgcgggcat	16	10	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153008744	A	A	153008744	2	1	172	1	0	0	0	0	0	0	0	1	60	991	35	4		4	ABCD1	23	153008744	Silent	SNP	G	TCGA-50-6594-01A-11D-1753-08	70627	153008744	2261816	1155	141581											
PLXNB3	5365	broad.mit.edu	37	chrX	153035264	153035264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacccctgcctggcaggtGtacccggaagggccagtgcg	16	13	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153035264	T	T	153035264	3	4	172	1	0	0	0	0	1	0	0	0	12220	1377	48	3	1639	3	PLXNB3	23	153035264	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	26520	153035264	2235296	1156	141582											
L1CAM	3897	broad.mit.edu	37	chrX	153133425	153133425	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtgagccccggccttctgGagtggaggcttccaccctag	13	13	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153133425	T	T	153133425	1	4	172	0	1	0	0	0	0	0	0	0	8660	1189	41	3		3	L1CAM	23	153133425	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	98161	153133425	2137135	1157	141583											
L1CAM	3897	broad.mit.edu	37	chrX	153135652	153135652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtgacacggtcggctgGcatggggccactggggcgca	19	10	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153135652	T	T	153135652	3	4	172	1	0	0	0	0	1	0	0	0	8660	1203	42	3	3007	3	L1CAM	23	153135652	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	2227	153135652	2134908	1158	141584											
OPN1MW	2652	broad.mit.edu	37	chrX	153490694	153490694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagccagtcggggcccagGctcagcggaaaccactcatt	12	13	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153490694	T	T	153490694	1	4	172	0	1	0	0	0	0	0	0	0	10972	1218	42	3		3	OPN1MW	23	153490694	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	355042	153490694	1779866	1159	141585											
FLNA	2316	broad.mit.edu	37	chrX	153590548	153590548	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagggaccatgtaggggcaCcctgccccaagccctcctac	10	17	0	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153590548	G	G	153590548	1	3	172	0	1	0	0	0	0	0	0	0	5991	522	18	4		4	FLNA	23	153590548	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	99854	153590548	1680012	1160	141586											
FAM50A	9130	broad.mit.edu	37	chrX	153674079	153674079	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgtgggtgagcagggtgcGggtgcccctcacccgggccc	17	15	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153674079	A	A	153674079	1	1	172	0	1	0	0	0	0	0	0	0	5628	1131	39	4		4	FAM50A	23	153674079	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	83531	153674079	1596481	1161	141587											
SLC10A3	8273	broad.mit.edu	37	chrX	153716008	153716008	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccaaggccagcaggctgttCtgcacccctacctcaatgct	9	16	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153716008	G	G	153716008	3	3	172	1	0	0	0	0	1	0	0	0	14488	912	32	4	165	4	SLC10A3	23	153716008	Missense_Mutation	SNP	C	TCGA-50-6594-01A-11D-1753-08	41929	153716008	1554552	1162	141588											
GAB3	139716	broad.mit.edu	37	chrX	153906437	153906437	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttccctgtttcacacatGgcacaagcccgcacctctca	6	17	2	0			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153906437	T	T	153906437	1	4	172	0	1	0	0	0	0	0	0	0	6210	1363	47	2		2	GAB3	23	153906437	3'UTR	SNP	G	TCGA-50-6594-01A-11D-1753-08	190429	153906437	1364123	1163	141589											
GAB3	139716	broad.mit.edu	37	chrX	153941734	153941734	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcccaggttaatgtttaaGaatggctataacacgcactc	7	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153941734	T	T	153941734	1	4	172	0	1	0	0	0	0	0	0	0	6210	957	33	3		3	GAB3	23	153941734	Intron	SNP	G	TCGA-50-6594-01A-11D-1753-08	35297	153941734	1328826	1164	141590											
DKC1	1736	broad.mit.edu	37	chrX	153999154	153999154	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggagaagcaatctgcatgGgtaagaggggatgtttattt	14	3	1	2			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153999154	A	A	153999154	3	1	172	1	0	0	0	0	1	0	0	0	4582	1246	43	4	1074	4	DKC1	23	153999154	Missense_Mutation	SNP	G	TCGA-50-6594-01A-11D-1753-08	57420	153999154	1271406	1165	141591											
DKC1	1736	broad.mit.edu	37	chrX	154001256	154001256	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatggagtatttcctccatAtgcacatcctgagcaaaggt	8	9	0	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154001256	G	G	154001256	1	3	172	0	1	0	0	0	0	0	0	0	4582	464	16	5		5	DKC1	23	154001256	Intron	SNP	A	TCGA-50-6594-01A-11D-1753-08	2102	154001256	1269304	1166	141592											
MPP1	4354	broad.mit.edu	37	chrX	154019431	154019431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagataccatagaagagaaaCcaggatttacagcatgttat	8	6	0	3			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154019431	A	A	154019431	1	1	172	0	1	0	0	0	0	0	0	0	9827	522	18	3		3	MPP1	23	154019431	Intron	SNP	C	TCGA-50-6594-01A-11D-1753-08	18175	154019431	1251129	1167	141593											
F8	2157	broad.mit.edu	37	chrX	154157135	154157135	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaccttgctttgcccaggTgacttctatttcgggcttat	8	12	1	1			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154157135	A	A	154157135	3	1	172	1	0	0	0	0	1	0	0	0	5393	1696	59	5	2205	5	F8	23	154157135	Missense_Mutation	SNP	T	TCGA-50-6594-01A-11D-1753-08	137704	154157135	1113425	1168	141594											
AKR7A3	22977	broad.mit.edu	37	chr1	19612764	19612764	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaggtagaagaggtccactCggggacactgcagccgcttc	14	12	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19612764	T	T	19612764	3	4	173	1	0	0	0	0	1	0	0	0	476	884	31	4	702	4	AKR7A3	1	19612764	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08		19612764	229637857	1	141595											
SPOCD1	90853	broad.mit.edu	37	chr1	32263879	32263879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgagctcatccgcaccaGgtcgtagggggtgacatctc	12	13	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32263879	T	T	32263879	3	4	173	1	0	0	0	0	1	0	0	0	15196	991	35	2	1608	2	SPOCD1	1	32263879	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	12651115	32263879	216986742	2	141596											
MCOLN3	55283	broad.mit.edu	37	chr1	85487776	85487776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatggtaaggccccagcaCgatccatccacagaagcagt	10	13	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85487776	T	T	85487776	3	4	173	1	0	0	0	0	1	0	0	0	9490	536	19	4	376	4	MCOLN3	1	85487776	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	53223897	85487776	163762845	3	141597											
CCDC18	343099	broad.mit.edu	37	chr1	93649735	93649735	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagacctatctagttaaaagAagttttggttttaggcctgt	9	5	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93649735	G	G	93649735	1	3	173	0	1	0	0	0	0	0	0	0	2821	261	9	5		5	CCDC18	1	93649735	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	8161959	93649735	155600886	4	141598											
HIST2H2AB	317772	broad.mit.edu	37	chr1	149859288	149859288	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagctccagaatttccgcgGtcaggtactcgaggaccgcc	11	15	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149859288	C	C	149859288	3	2	173	1	0	0	0	0	1	0	0	0	7244	1261	44	4	217	4	HIST2H2AB	1	149859288	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	56209553	149859288	99391333	5	141599											
PRRX1	5396	broad.mit.edu	37	chr1	170695593	170695593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttccacatgtttctcagcGgtcggtcatgtttcaagctg	9	11	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170695593	T	T	170695593	1	4	173	0	1	0	0	0	0	0	0	0	12718	1131	39	1		1	PRRX1	1	170695593	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	20836305	170695593	78555028	6	141600											
KLHL20	27252	broad.mit.edu	37	chr1	173735414	173735414	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggatggtgtgtcttgcctCaacattgttgagaggtgatc	13	7	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173735414	T	T	173735414	2	4	173	1	0	0	0	0	0	0	0	1	8446	813	29	4		4	KLHL20	1	173735414	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	3039821	173735414	75515207	7	141601											
GPR52	9293	broad.mit.edu	37	chr1	174417353	174417353	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttggatttggccactacaGtgtggtggatgtctgcatct	12	8	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174417353	C	C	174417353	3	2	173	1	0	0	0	0	1	0	0	0	6763	1029	36	4	106	4	GPR52	1	174417353	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	681939	174417353	74833268	8	141602											
RFWD2	64326	broad.mit.edu	37	chr1	176145160	176145160	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagctattagtagggggggAaaaaaaaggcttaattaaat	12	2	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176145160	G	G	176145160	1	3	173	0	1	0	0	0	0	0	0	0	13368	261	9	5		5	RFWD2	1	176145160	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	1727807	176145160	73105461	9	141603											
C1orf26	54823	broad.mit.edu	37	chr1	185196383	185196383	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccagtggtaattctggcaaGacctgcatccaaatagcagg	11	10	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185196383	T	T	185196383	1	4	173	0	1	0	0	0	0	0	0	0	2057	957	33	3		3	C1orf26	1	185196383	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	9051223	185196383	64054238	10	141604											
FAM5C	339479	broad.mit.edu	37	chr1	190068056	190068056	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggctgagcatgtagccggTgttgcaggtgccgcagcggg	18	10	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190068056	A	A	190068056	3	1	173	1	0	0	0	0	1	0	0	0	5645	1696	59	5	911	5	FAM5C	1	190068056	Missense_Mutation	SNP	T	TCGA-50-6595-01A-12D-1855-08	4871673	190068056	59182565	11	141605											
FAIM3	9214	broad.mit.edu	37	chr1	207085276	207085276	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaactggagggaccttgCccctttgagctggtgtggta	16	8	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207085276	T	T	207085276	3	4	173	1	0	0	0	0	1	0	0	0	5423	739	26	4	683	4	FAIM3	1	207085276	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	17017220	207085276	42165345	12	141606											
CD34	947	broad.mit.edu	37	chr1	208072190	208072190	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatttaaactgtgtatttcCgtgctgattcccacatgacc	6	10	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208072190	T	T	208072190	1	4	173	0	1	0	0	0	0	0	0	0	3036	667	23	4		4	CD34	1	208072190	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	986914	208072190	41178431	13	141607											
PPP2R5A	5525	broad.mit.edu	37	chr1	212521742	212521742	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctccagtattatcaatgGctttgcattgccactgaaag	7	11	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	212521742	C	C	212521742	3	2	173	1	0	0	0	0	1	0	0	0	12493	1203	42	4	802	4	PPP2R5A	1	212521742	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	4449552	212521742	36728879	14	141608											
NLRP3	114548	broad.mit.edu	37	chr1	247588806	247588806	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtttctccataacatGcccaaggaggaagaggagga	14	8	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247588806	C	C	247588806	3	2	173	1	0	0	0	0	1	0	0	0	10573	1319	46	4	2071	4	NLRP3	1	247588806	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	35067064	247588806	1661815	15	141609											
OR2M7	391196	broad.mit.edu	37	chr1	248487204	248487204	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccatgtgaatgacagccaGaataactcgagcataggaag	10	9	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248487204	C	C	248487204	3	2	173	1	0	0	0	0	1	0	0	0	11108	933	33	4	274	4	OR2M7	1	248487204	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	898398	248487204	763417	16	141610											
KLF11	8462	broad.mit.edu	37	chr2	10186145	10186146	+	Intron	DNP	TT	AA	AA													cttttactacacctcggtgtTtgttgctatagactattgca							TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	10186146	AA	AA	10186145	1	1	173	0	1	0	0	0	0	0	0	0	8410	1856	64	5		5	KLF11	2	10186145	Intron	DNP	TT	TCGA-50-6595-01A-12D-1855-08		10186145	233013228	17	141611											
ATAD2B	54454	broad.mit.edu	37	chr2	24095140	24095140	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatagctaagagcaggaagCcacagcttccacggctttac	9	12	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24095140	G	G	24095140	1	3	173	0	1	0	0	0	0	0	0	0	1076	754	26	4		4	ATAD2B	2	24095140	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	13908995	24095140	219104233	18	141612											
DNMT3A	1788	broad.mit.edu	37	chr2	25470495	25470495	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctccgaaccacatgacccAgcgggtgccttcagctgctc	10	16	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25470495	C	C	25470495	3	2	173	1	0	0	0	0	1	0	0	0	4716	188	7	5	1823	5	DNMT3A	2	25470495	Missense_Mutation	SNP	A	TCGA-50-6595-01A-12D-1855-08	1375355	25470495	217728878	19	141613											
CIB4	130106	broad.mit.edu	37	chr2	26818193	26818193	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagggttgacctgtgggCgacaggaggagcagggagga	20	5	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26818193	T	T	26818193	1	4	173	0	1	0	0	0	0	0	0	0	3454	783	27	4		4	CIB4	2	26818193	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	1347698	26818193	216381180	20	141614											
DNAH6	1768	broad.mit.edu	37	chr2	84804447	84804447	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaggacgcagtagcgctcaGacccaccagaaatgtaggat	11	11	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84804447	C	C	84804447	3	2	173	1	0	0	0	0	1	0	0	0	4645	942	33	4	2037	4	DNAH6	2	84804447	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	57986254	84804447	158394926	21	141615											
GLI2	2736	broad.mit.edu	37	chr2	121708991	121708991	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccccacgctctccatgatcTctgcagccaggggcctcagc	10	18	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121708991	A	A	121708991	3	1	173	1	0	0	0	0	1	0	0	0	6502	1551	54	5	437	5	GLI2	2	121708991	Missense_Mutation	SNP	T	TCGA-50-6595-01A-12D-1855-08	36904544	121708991	121490382	22	141616											
LRP1B	53353	broad.mit.edu	37	chr2	141526893	141526893	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattccttcatgaacagagtAcataagaaatgattctatac	6	7	2	4			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141526893	G	G	141526893	3	3	173	1	0	0	0	0	1	0	0	0	9042	391	14	5	8380	5	LRP1B	2	141526893	Missense_Mutation	SNP	A	TCGA-50-6595-01A-12D-1855-08	19817902	141526893	101672480	23	141617											
CDCA7	83879	broad.mit.edu	37	chr2	174229553	174229553	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccgcgaaggcgtacattcCcgggtgttgcttccaggaga	14	11	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174229553	T	T	174229553	3	4	173	1	0	0	0	0	1	0	0	0	3120	623	22	4	752	4	CDCA7	2	174229553	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	32702660	174229553	68969820	24	141618											
TTN	7273	broad.mit.edu	37	chr2	179446303	179446303	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttattaacggcatacacaCggaattgatattgtgtgtct	8	7	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179446303	G	G	179446303	3	3	173	1	0	0	0	0	1	0	0	0	16861	536	19	4	41475	4	TTN	2	179446303	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	5216750	179446303	63753070	25	141619											
NBEAL1	65065	broad.mit.edu	37	chr2	204063925	204063925	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatcttaagatgtgcttaatGagtttcaggtttgaagtaca	9	4	2	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204063925	C	C	204063925	1	2	173	0	1	0	0	0	0	0	0	0	10282	1305	45	4		4	NBEAL1	2	204063925	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	24617622	204063925	39135448	26	141620											
ABCA12	26154	broad.mit.edu	37	chr2	215884116	215884116	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagcatggcttctatgatcGgtattaactgagtgatattt	10	6	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215884116	C	C	215884116	3	2	173	1	0	0	0	0	1	0	0	0	30	1116	39	4	6350	4	ABCA12	2	215884116	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	11820191	215884116	27315257	27	141621											
HDAC4	9759	broad.mit.edu	37	chr2	240016554	240016554	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaaaacgctctcggctcaCacggcctttgaagccgcaca	8	15	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240016554	T	T	240016554	1	4	173	0	1	0	0	0	0	0	0	0	7076	493	17	4		4	HDAC4	2	240016554	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	24132438	240016554	3182819	28	141622											
PPP1R7	5510	broad.mit.edu	37	chr2	242105745	242105745	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacagctgtgtgctctccctCttgcagagcaaccggctgac	11	14	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242105745	G	G	242105745	1	3	173	0	1	0	0	0	0	0	0	0	12477	928	32	4		4	PPP1R7	2	242105745	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	2089191	242105745	1093628	29	141623											
GRM7	2917	broad.mit.edu	37	chr3	6903349	6903349	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctggaccagatcaacagtGatcccaacctactgcccaac	6	17	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6903349	T	T	6903349	3	4	173	1	0	0	0	0	1	0	0	0	6868	1290	45	3	276	3	GRM7	3	6903349	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08		6903349	191119081	30	141624											
LIMD1	8994	broad.mit.edu	37	chr3	45637520	45637520	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggcactggtcccaagctCagccccaccagtcttgtcca	8	17	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45637520	G	G	45637520	2	3	173	1	0	0	0	0	0	0	0	1	8870	813	29	4		4	LIMD1	3	45637520	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	38734171	45637520	152384910	31	141625											
ROBO1	6091	broad.mit.edu	37	chr3	78649390	78649390	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctcttgatgacattgagCttgaggaactgggatctctg	11	8	2	4			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78649390	T	T	78649390	3	4	173	1	0	0	0	0	1	0	0	0	13624	797	28	4	149	4	ROBO1	3	78649390	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	33011870	78649390	119373040	32	141626											
TOMM70A	9868	broad.mit.edu	37	chr3	100093992	100093992	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttgatgagagcatttgctCgaagctatataccccaagtg	9	8	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100093992	T	T	100093992	3	4	173	1	0	0	0	0	1	0	0	0	16486	884	31	4	753	4	TOMM70A	3	100093992	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	21444602	100093992	97928438	33	141627											
PLSCR2	57047	broad.mit.edu	37	chr3	146166994	146166994	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagcaggaatagacttacaAtgaggaaacaggcaccaatc	9	8	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146166994	G	G	146166994	3	3	173	1	0	0	0	0	1	0	0	0	12205	115	4	5	38	5	PLSCR2	3	146166994	Missense_Mutation	SNP	A	TCGA-50-6595-01A-12D-1855-08	46073002	146166994	51855436	34	141628											
PLSCR2	57047	broad.mit.edu	37	chr3	146167007	146167007	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttacaatgaggaaacaggCaccaatcatcacggctttca	7	11	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146167007	G	G	146167007	3	3	173	1	0	0	0	0	1	0	0	0	12205	710	25	4	51	4	PLSCR2	3	146167007	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	13	146167007	51855423	35	141629											
PHC3	80012	broad.mit.edu	37	chr3	169840403	169840403	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaggatgttcagaagtcaAatcttctcctctccccactg	6	13	5	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169840403	C	C	169840403	3	2	173	1	0	0	0	0	1	0	0	0	11913	11	1	5	1097	5	PHC3	3	169840403	Missense_Mutation	SNP	A	TCGA-50-6595-01A-12D-1855-08	23673396	169840403	28182027	36	141630											
TTC14	151613	broad.mit.edu	37	chr3	180327734	180327734	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaaaagacacagataaaaGagaaagatagatgccctctc	8	7	1	6			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180327734	A	A	180327734	3	1	173	1	0	0	0	0	1	0	0	0	16807	943	33	4	1793	4	TTC14	3	180327734	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	10487331	180327734	17694696	37	141631											
POLR2H	5437	broad.mit.edu	37	chr3	184081293	184081293	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgcgatggcgggcatcCtgtttgaggatattttcgat	12	10	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184081293	T	T	184081293	2	4	173	1	0	0	0	0	0	0	0	1	12316	680	24	4		4	POLR2H	3	184081293	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	3753559	184081293	13941137	38	141632											
DGKQ	1609	broad.mit.edu	37	chr4	958905	958905	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtgcacctgcagacccCgacctccctctggccacccc	8	22	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	958905	A	A	958905	1	1	173	0	1	0	0	0	0	0	0	0	4513	667	23	1		1	DGKQ	4	958905	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08		958905	190195371	39	141633											
ACOX3	8310	broad.mit.edu	37	chr4	8407736	8407736	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctatgtcgccaaccatcactCcaggcatgggaagaagggtc	11	12	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8407736	T	T	8407736	3	4	173	1	0	0	0	0	1	0	0	0	160	855	30	4	1428	4	ACOX3	4	8407736	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	7448831	8407736	182746540	40	141634											
LRRC66	339977	broad.mit.edu	37	chr4	52860582	52860582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctctttcatggaaggcaGccttatcaggatctgaggga	12	8	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52860582	T	T	52860582	3	4	173	1	0	0	0	0	1	0	0	0	9105	971	34	3	40	3	LRRC66	4	52860582	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	44452846	52860582	138293694	41	141635											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68691511	68691511	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcattccagacaagatggctCcattataactatgtggtgca	9	9	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68691511	T	T	68691511	3	4	173	1	0	0	0	0	1	0	0	0	16364	855	30	4	230	4	TMPRSS11D	4	68691511	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	15830929	68691511	122462765	42	141636											
FRAS1	80144	broad.mit.edu	37	chr4	79391329	79391329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacttatgaatagaagtcCagttcagctcacctgtttat	7	8	2	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79391329	A	A	79391329	1	1	173	0	1	0	0	0	0	0	0	0	6102	609	21	2		2	FRAS1	4	79391329	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	10699818	79391329	111762947	43	141637											
UNC5C	8633	broad.mit.edu	37	chr4	96137371	96137371	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagctgactcctgaatagCaaaagagaaaagcagtcatt	9	8	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96137371	A	A	96137371	1	1	173	0	1	0	0	0	0	0	0	0	17119	725	25	3		3	UNC5C	4	96137371	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	16746042	96137371	95016905	44	141638											
AGXT2L1	64850	broad.mit.edu	37	chr4	109665008	109665008	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggttcccatagcttcttcTaaaactgaatcaaggaaggt	8	8	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109665008	A	A	109665008	3	1	173	1	0	0	0	0	1	0	0	0	406	1519	53	5	199	5	AGXT2L1	4	109665008	Missense_Mutation	SNP	T	TCGA-50-6595-01A-12D-1855-08	13527637	109665008	81489268	45	141639											
ANK2	287	broad.mit.edu	37	chr4	113803030	113803030	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgggtttttgagaatattctCttgagaccgctctctttggt	10	8	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113803030	T	T	113803030	1	4	173	0	1	0	0	0	0	0	0	0	621	928	32	4		4	ANK2	4	113803030	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	4138022	113803030	77351246	46	141640											
ZNF827	152485	broad.mit.edu	37	chr4	146791527	146791527	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacacttcagattccgggctGaacacatagctggaccgagg	12	11	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146791527	A	A	146791527	2	1	173	1	0	0	0	0	0	0	0	1	18309	1281	45	4		4	ZNF827	4	146791527	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	32988497	146791527	44362749	47	141641											
ARHGAP10	79658	broad.mit.edu	37	chr4	148796218	148796218	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagaagtggaagagctcaTgaacaaaatcagacagaatc	10	7	3	5			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148796218	C	C	148796218	3	2	173	1	0	0	0	0	1	0	0	0	864	1464	51	5	779	5	ARHGAP10	4	148796218	Missense_Mutation	SNP	T	TCGA-50-6595-01A-12D-1855-08	2004691	148796218	42358058	48	141642											
PLEKHG4B	153478	broad.mit.edu	37	chr5	169734	169734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggccatggcgtgggtgcCgggcaacgtggtgggtgaag	21	8	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169734	A	A	169734	1	1	173	0	1	0	0	0	0	0	0	0	12167	667	23	1		1	PLEKHG4B	5	169734	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08		169734	180745526	49	141643											
SLC6A18	348932	broad.mit.edu	37	chr5	1244701	1244701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacagaccatgtgaagcCtgagcccagcatctggtgca	10	13	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1244701	A	A	1244701	1	1	173	0	1	0	0	0	0	0	0	0	14795	696	24	2		2	SLC6A18	5	1244701	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	1074967	1244701	179670559	50	141644											
PAPD7	11044	broad.mit.edu	37	chr5	6743821	6743821	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctttttcttttggaatttAcagaaatattcattgctgcc	5	7	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6743821	T	T	6743821	1	4	173	0	1	0	0	0	0	0	0	0	11520	406	14	5		5	PAPD7	5	6743821	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	5499120	6743821	174171439	51	141645											
PARP8	79668	broad.mit.edu	37	chr5	50111358	50111358	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatagcaactggagctcaGgtagtaacacaggatactaa	10	7	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50111358	A	A	50111358	2	1	173	1	0	0	0	0	0	0	0	1	11559	1014	35	4		4	PARP8	5	50111358	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	43367537	50111358	130803902	52	141646											
PDE8B	8622	broad.mit.edu	37	chr5	76624847	76624847	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccgggccacaaatccctcCgagcacacggtgatcctcgc	9	17	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76624847	A	A	76624847	2	1	173	1	0	0	0	0	0	0	0	1	11748	639	23	1		1	PDE8B	5	76624847	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	26513489	76624847	104290413	53	141647											
ACSL6	23305	broad.mit.edu	37	chr5	131309043	131309043	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtcatctgagagaaggcgGatatctccctggaagaagcc	12	9	3	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131309043	A	A	131309043	2	1	173	1	0	0	0	0	0	0	0	1	181	1164	41	4		4	ACSL6	5	131309043	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	54684196	131309043	49606217	54	141648											
PCDHA6	56142	broad.mit.edu	37	chr5	140208743	140208743	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatagcactgacttccttatCcttgcctgtacgtgaagacg	9	11	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140208743	T	T	140208743	3	4	173	1	0	0	0	0	1	0	0	0	11622	855	30	4	1069	4	PCDHA6	5	140208743	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	8899700	140208743	40706517	55	141649											
GRM6	2916	broad.mit.edu	37	chr5	178413779	178413779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcacaaaacacaggctgGggcgtctgcctccgggatcc	13	14	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178413779	T	T	178413779	1	4	173	0	1	0	0	0	0	0	0	0	6867	1247	43	2		2	GRM6	5	178413779	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	38205036	178413779	2501481	56	141650											
ZNF354C	30832	broad.mit.edu	37	chr5	178503623	178503623	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttataggaacgcctcacagGtccatctttggggttccgag	12	10	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178503623	C	C	178503623	1	2	173	0	1	0	0	0	0	0	0	0	17992	1276	44	4		4	ZNF354C	5	178503623	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	89844	178503623	2411637	57	141651											
HIST1H1E	3008	broad.mit.edu	37	chr6	26156807	26156807	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatctttggccgctctcaaGaaagcgctggcagccgctgg	13	12	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26156807	A	A	26156807	2	1	173	1	0	0	0	0	0	0	0	1	7193	933	33	4		4	HIST1H1E	6	26156807	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08		26156807	144958260	58	141652											
C6orf136	221545	broad.mit.edu	37	chr6	30619243	30619243	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacaaagacgagcattaccGgtaagagagaaatgagaaag	12	5	0	5			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30619243	A	A	30619243	3	1	173	1	0	0	0	0	1	0	0	0	2354	1130	39	4	1321	4	C6orf136	6	30619243	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	4462436	30619243	140495824	59	141653											
GSTA1	2938	broad.mit.edu	37	chr6	52657701	52657701	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggagtcaagctcctcgaCgtagtagagaagttccacca	10	11	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52657701	T	T	52657701	3	4	173	1	0	0	0	0	1	0	0	0	6896	536	19	4	177	4	GSTA1	6	52657701	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	22038458	52657701	118457366	60	141654											
C6orf165	154313	broad.mit.edu	37	chr6	88126328	88126328	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaaaacgttatttaacGtctgatatctttattctatc	4	6	3	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88126328	T	T	88126328	1	4	173	0	1	0	0	0	0	0	0	0	2364	1160	40	3		3	C6orf165	6	88126328	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	35468627	88126328	82988739	61	141655											
C6orf204	387119	broad.mit.edu	37	chr6	118887202	118887202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcatacagtgccaccCtggccacagttatccggggc	10	15	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118887202	A	A	118887202	3	1	173	1	0	0	0	0	1	0	0	0	2376	680	24	2	2005	2	C6orf204	6	118887202	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	30760874	118887202	52227865	62	141656											
NCOA7	135112	broad.mit.edu	37	chr6	126211682	126211682	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtaggatgtttctgcaAtgttttgactaagagaggat	12	3	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126211682	G	G	126211682	1	3	173	0	1	0	0	0	0	0	0	0	10329	116	4	5		5	NCOA7	6	126211682	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	7324480	126211682	44903385	63	141657											
NCOA7	135112	broad.mit.edu	37	chr6	126249904	126249904	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttcaggatctggaggtgtGggcatttgattgaaattcag	14	4	3	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126249904	C	C	126249904	3	2	173	1	0	0	0	0	1	0	0	0	10329	1357	47	4	2874	4	NCOA7	6	126249904	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	38222	126249904	44865163	64	141658											
GRM1	2911	broad.mit.edu	37	chr6	146755808	146755808	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccgtcgcctttccgcgactCggtggcctcgggcagctcgg	14	16	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146755808	T	T	146755808	3	4	173	1	0	0	0	0	1	0	0	0	6862	893	31	4	3556	4	GRM1	6	146755808	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	20505904	146755808	24359259	65	141659											
AKAP12	9590	broad.mit.edu	37	chr6	151670666	151670666	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgagaaagttgagctgccCtcagaggagcaagtcagtgg	14	7	2	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151670666	A	A	151670666	2	1	173	1	0	0	0	0	0	0	0	1	448	668	24	2		2	AKAP12	6	151670666	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	4914858	151670666	19444401	66	141660											
CCR6	1235	broad.mit.edu	37	chr6	167550481	167550481	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcacaaagccatccgtGtaatcatagctgtggtgctt	10	9	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167550481	C	C	167550481	3	2	173	1	0	0	0	0	1	0	0	0	2975	1377	48	4	769	4	CCR6	6	167550481	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	15879815	167550481	3564586	67	141661											
INTS1	26173	broad.mit.edu	37	chr7	1516170	1516170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctcccggatgggccacCccctctcccggatgggccac	10	21	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1516170	A	A	1516170	1	1	173	0	1	0	0	0	0	0	0	0	7845	638	22	2		2	INTS1	7	1516170	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08		1516170	157622493	68	141662											
MAD1L1	8379	broad.mit.edu	37	chr7	2041675	2041675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccaggtgccctgaatcCcagccactcccgcgtctgac	11	17	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2041675	A	A	2041675	1	1	173	0	1	0	0	0	0	0	0	0	9235	638	22	2		2	MAD1L1	7	2041675	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	525505	2041675	157096988	69	141663											
BBS9	27241	broad.mit.edu	37	chr7	33192289	33192289	+	Intron	DEL	T	-	-													tgtttgtttctccctctatcTttttttttttaaattctcta							TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33192289	-	-	33192289	6	5	173	0	1	1	0	1	0	0	0	0	1347	1624	56	0		0	BBS9	7	33192289	Intron	DEL	T	TCGA-50-6595-01A-12D-1855-08	31150614	33192289	125946374	70	141664											
TXNDC3	51314	broad.mit.edu	37	chr7	37916489	37916489	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctctgtgacattgaagagGatgcagctaatgttgctaag	12	6	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37916489	A	A	37916489	3	1	173	1	0	0	0	0	1	0	0	0	16924	1174	41	4	912	4	TXNDC3	7	37916489	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	4724200	37916489	121222174	71	141665											
EGFR	1956	broad.mit.edu	37	chr7	55211207	55211207	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggctgggatgccaaggctgGgggttcataaatgcagacag	16	7	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55211207	C	C	55211207	1	2	173	0	1	0	0	0	0	0	0	0	5007	1247	43	4		4	EGFR	7	55211207	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	17294718	55211207	103927456	72	141666											
EGFR	1956	broad.mit.edu	37	chr7	55241708	55241708	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaaaagatcaaagtgctggGctccggtgcgttcggcacgg	14	10	1	1	rs121913428		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55241708	C	C	55241708	3	2	173	1	0	0	0	0	1	0	0	0	5007	1203	42	4	2490	4	EGFR	7	55241708	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	30501	55241708	103896955	73	141667											
EGFR	1956	broad.mit.edu	37	chr7	55249005	55249005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcctacgtgatggccaGcgtggacaacccccacgtgt	13	13	0	1	rs146024686		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55249005	T	T	55249005	3	4	173	1	0	0	0	0	1	0	0	0	5007	971	34	3	2645	3	EGFR	7	55249005	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	7297	55249005	103889658	74	141668											
TYW1	55253	broad.mit.edu	37	chr7	66582688	66582688	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaagaaagatggaagaaaaGaacagaggtactttttcctc	10	5	0	5			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66582688	C	C	66582688	1	2	173	0	1	0	0	0	0	0	0	0	16944	957	33	4		4	TYW1	7	66582688	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	11333683	66582688	92555975	75	141669											
CLIP2	7461	broad.mit.edu	37	chr7	73768216	73768216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgccgacaggttggcGggacgaagactggcgtggtg	19	8	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73768216	T	T	73768216	3	4	173	1	0	0	0	0	1	0	0	0	3565	1116	39	1	695	1	CLIP2	7	73768216	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	7185528	73768216	85370447	76	141670											
GTF2IRD1	9569	broad.mit.edu	37	chr7	73973268	73973268	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accccggctccgtgatcatcGaggggctgcccccaggaatc	12	16	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73973268	A	A	73973268	3	1	173	1	0	0	0	0	1	0	0	0	6933	1059	37	4	2308	4	GTF2IRD1	7	73973268	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	205052	73973268	85165395	77	141671											
ABCB4	5244	broad.mit.edu	37	chr7	87041236	87041236	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catctctgaagcgcatatgtCcattcacaatgagatatgca	7	10	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87041236	G	G	87041236	3	3	173	1	0	0	0	0	1	0	0	0	43	855	30	4	987	4	ABCB4	7	87041236	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	13067968	87041236	72097427	78	141672											
ADAM22	53616	broad.mit.edu	37	chr7	87757864	87757864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatattttttagcttttcGcagccaagtttagagggctg	9	8	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87757864	T	T	87757864	1	4	173	0	1	0	0	0	0	0	0	0	244	1102	38	3		3	ADAM22	7	87757864	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	716628	87757864	71380799	79	141673											
ACN9	57001	broad.mit.edu	37	chr7	96747030	96747030	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcggcggtcggcgtggGgcgctatgccggggcggcac	21	12	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96747030	T	T	96747030	1	4	173	0	1	0	0	0	0	0	0	0	145	1247	43	2		2	ACN9	7	96747030	5'UTR	SNP	G	TCGA-50-6595-01A-12D-1855-08	8989166	96747030	62391633	80	141674											
PILRB	29990	broad.mit.edu	37	chr7	99936376	99936376	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacctttttttcatatttctGatctttttatgtgtatcagg	5	6	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99936376	C	C	99936376	1	2	173	0	1	0	0	0	0	0	0	0	12021	1305	45	4		4	PILRB	7	99936376	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	3189346	99936376	59202287	81	141675											
LRWD1	222229	broad.mit.edu	37	chr7	102113258	102113258	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcccccacacaggtactgCccggctcaccctgcccaggc	10	20	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102113258	T	T	102113258	1	4	173	0	1	0	0	0	0	0	0	0	9134	754	26	4		4	LRWD1	7	102113258	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	2176882	102113258	57025405	82	141676											
FEZF1	389549	broad.mit.edu	37	chr7	121941978	121941978	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggtctgcagacgaactcGgaccaggagctctagtctgc	14	11	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121941978	C	C	121941978	1	2	173	0	1	0	0	0	0	0	0	0	5882	1131	39	4		4	FEZF1	7	121941978	3'UTR	SNP	G	TCGA-50-6595-01A-12D-1855-08	19828720	121941978	37196685	83	141677											
DENND2A	27147	broad.mit.edu	37	chr7	140285336	140285336	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggaactccagagtgctcaAggccaccatgctttggcccc	10	16	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140285336	T	T	140285336	1	4	173	0	1	0	0	0	0	0	0	0	4469	87	3	5		5	DENND2A	7	140285336	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	18343358	140285336	18853327	84	141678											
MLL3	58508	broad.mit.edu	37	chr7	151855941	151855941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgctctaaatgactcaCcctcacctgtttcaagtggg	9	12	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151855941	A	A	151855941	1	1	173	0	1	0	0	0	0	0	0	0	9715	522	18	3		3	MLL3	7	151855941	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	11570605	151855941	7282722	85	141679											
WDR60	55112	broad.mit.edu	37	chr7	158711644	158711644	+	Intron	DEL	T	-	-													ctctgtagtataatattttaTtttaatgtgatggggtttaa					rs3216979		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158711644	-	-	158711644	6	5	173	0	1	1	0	1	0	0	0	0	17438	1508	52	0		0	WDR60	7	158711644	Intron	DEL	T	TCGA-50-6595-01A-12D-1855-08	6855703	158711644	427019	86	141680											
SLC7A2	6542	broad.mit.edu	37	chr8	17421114	17421114	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattgttttccccctcaggtTccattcttaccatttttgcc	5	13	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17421114	C	C	17421114	2	2	173	1	0	0	0	0	0	0	0	1	14811	1770	62	5		5	SLC7A2	8	17421114	Silent	SNP	T	TCGA-50-6595-01A-12D-1855-08		17421114	128942908	87	141681											
ADAM2	2515	broad.mit.edu	37	chr8	39634694	39634694	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggtgctgagaaaaaaaaAtagatgtacacgttttggga	13	3	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39634694	C	C	39634694	1	2	173	0	1	0	0	0	0	0	0	0	241	116	4	5		5	ADAM2	8	39634694	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	22213580	39634694	106729328	88	141682											
ASPH	444	broad.mit.edu	37	chr8	62577896	62577896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgtcatctttgtctcGggatgccattttactagaaa	7	9	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62577896	T	T	62577896	1	4	173	0	1	0	0	0	0	0	0	0	1057	1124	39	1		1	ASPH	8	62577896	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	22943202	62577896	83786126	89	141683											
ZBTB10	65986	broad.mit.edu	37	chr8	81426206	81426206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgaatgcaaatttattGgctgaagctggcactagtca	10	6	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81426206	T	T	81426206	3	4	173	1	0	0	0	0	1	0	0	0	17649	1339	47	2	1933	2	ZBTB10	8	81426206	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	18848310	81426206	64937816	90	141684											
CA1	759	broad.mit.edu	37	chr8	86242016	86242016	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccagggtaggtccagaaatCcagggatgaaggaaggagag	17	6	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86242016	G	G	86242016	3	3	173	1	0	0	0	0	1	0	0	0	2536	855	30	4	222	4	CA1	8	86242016	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	4815810	86242016	60122006	91	141685											
SLC26A7	115111	broad.mit.edu	37	chr8	92374658	92374658	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttggtgttgtttgtacCatagctatagtgataggacg	12	5	0	1	rs144974209		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92374658	T	T	92374658	2	4	173	1	0	0	0	0	0	0	0	1	14636	581	21	4		4	SLC26A7	8	92374658	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	6132642	92374658	53989364	92	141686											
ANXA13	312	broad.mit.edu	37	chr8	124706047	124706047	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattgacacattgttattaaCttgcattcctgcttgaccac	5	10	0	2	rs12056704		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124706047	G	G	124706047	1	3	173	0	1	0	0	0	0	0	0	0	717	580	20	4		4	ANXA13	8	124706047	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	32331389	124706047	21657975	93	141687											
ASAP1	50807	broad.mit.edu	37	chr8	131067070	131067070	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctgcagggagaaaagagaGtggtcaggatggaggcagca	17	5	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131067070	C	C	131067070	1	2	173	0	1	0	0	0	0	0	0	0	1014	1044	36	4		4	ASAP1	8	131067070	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	6361023	131067070	15296952	94	141688											
TG	7038	broad.mit.edu	37	chr8	134042186	134042186	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtccctggcagcagaccGtggcggggctgatgtggcca	17	12	0	2	rs144905796	byFrequency	TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134042186	A	A	134042186	3	1	173	1	0	0	0	0	1	0	0	0	15936	1145	40	4	7319	4	TG	8	134042186	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	2975116	134042186	12321836	95	141689											
SLC24A2	25769	broad.mit.edu	37	chr9	19520813	19520813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaggttcagagatcctgGtcatgtctttccagcttcta	8	10	5	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19520813	T	T	19520813	1	4	173	0	1	0	0	0	0	0	0	0	14580	1276	44	3		3	SLC24A2	9	19520813	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08		19520813	121692618	96	141690											
CDKN2A	1029	broad.mit.edu	37	chr9	21974763	21974763	+	Frame_Shift_Del	DEL	G	-	-													cacctcctctacccgaccccGggccgcggccgtggccagcc							TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21974763	-	-	21974763	7	5	173	1	0	1	0	1	0	0	0	0	3191	1115	39	0	619	0	CDKN2A	9	21974763	Frame_Shift_Del	DEL	G	TCGA-50-6595-01A-12D-1855-08	2453950	21974763	119238668	97	141691											
TLN1	7094	broad.mit.edu	37	chr9	35717691	35717691	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacttgggtctgaagtccCgagtcctctgtccgctgggc	12	12	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35717691	A	A	35717691	2	1	173	1	0	0	0	0	0	0	0	1	16070	639	23	1		1	TLN1	9	35717691	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	13742928	35717691	105495740	98	141692											
C9orf128	392307	broad.mit.edu	37	chr9	35826173	35826173	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccatctagtggtagaacaGggtacaggcttcattaggtt	11	7	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35826173	C	C	35826173	1	2	173	0	1	0	0	0	0	0	0	0	2481	1015	35	4		4	C9orf128	9	35826173	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	108482	35826173	105387258	99	141693											
TEX10	54881	broad.mit.edu	37	chr9	103108428	103108428	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaagaacttgctgcataaCctgtagaggttctcgttcta	8	8	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103108428	T	T	103108428	3	4	173	1	0	0	0	0	1	0	0	0	15894	507	18	4	1774	4	TEX10	9	103108428	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	67282255	103108428	38105003	100	141694											
C9orf125	84302	broad.mit.edu	37	chr9	104238192	104238192	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgggatgaaagttgtaccGgagactggagaagagcccga	15	7	0	4			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104238192	A	A	104238192	3	1	173	1	0	0	0	0	1	0	0	0	2480	1115	39	4	32	4	C9orf125	9	104238192	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	1129764	104238192	36975239	101	141695											
TLR4	7099	broad.mit.edu	37	chr9	120476638	120476638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagcacttcatccagagCcgctggtgtatctttgaata	8	12	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476638	A	A	120476638	3	1	173	1	0	0	0	0	1	0	0	0	16076	738	26	3	2242	3	TLR4	9	120476638	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	16238446	120476638	20736793	102	141696											
ODF2	4957	broad.mit.edu	37	chr9	131219701	131219701	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccatgtctgcctcatcctCaggcggctcccccaggtatt	9	16	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131219701	T	T	131219701	3	4	173	1	0	0	0	0	1	0	0	0	10922	838	29	4	19	4	ODF2	9	131219701	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	10743063	131219701	9993730	103	141697											
ODF2	4957	broad.mit.edu	37	chr9	131223324	131223324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggaaaatcatctgcccGgcctgtgggatgcaagtggg	14	11	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131223324	T	T	131223324	3	4	173	1	0	0	0	0	1	0	0	0	10922	1131	39	1		1	ODF2	9	131223324	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	3623	131223324	9990107	104	141698											
CAMSAP1	157922	broad.mit.edu	37	chr9	138714931	138714931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgctcaggaggctcttccCgtggctcttcgtggccgtgg	14	12	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138714931	A	A	138714931	3	1	173	1	0	0	0	0	1	0	0	0	2637	652	23	1	3260	1	CAMSAP1	9	138714931	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	7491607	138714931	2498500	105	141699											
UCMA	221044	broad.mit.edu	37	chr10	13271571	13271571	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatgtgatttctccccaaCgctccacctccctgaagaca	5	17	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13271571	T	T	13271571	1	4	173	0	1	0	0	0	0	0	0	0	17052	551	19	4		4	UCMA	10	13271571	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08		13271571	122263176	106	141700											
CTNNA3	29119	broad.mit.edu	37	chr10	67680437	67680437	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgttaattattgccaaGcgtgggcatggtggcatgtg	14	5	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67680437	T	T	67680437	1	4	173	0	1	0	0	0	0	0	0	0	4048	986	34	3		3	CTNNA3	10	67680437	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	54408866	67680437	67854310	107	141701											
COL13A1	1305	broad.mit.edu	37	chr10	71654410	71654410	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagctttggtttctaactctCtcatctccgtctctttgtag	6	11	5	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71654410	G	G	71654410	1	3	173	0	1	0	0	0	0	0	0	0	3702	928	32	4		4	COL13A1	10	71654410	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	3973973	71654410	63880337	108	141702											
SEC24C	9632	broad.mit.edu	37	chr10	75525733	75525733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgagacagctgagaatgGctgttatcatttccctcacc	8	10	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75525733	T	T	75525733	1	4	173	0	1	0	0	0	0	0	0	0	14109	1218	42	3		3	SEC24C	10	75525733	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	3871323	75525733	60009014	109	141703											
MYST4	23522	broad.mit.edu	37	chr10	76788256	76788256	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcactaagacaatatgaAtgatgattcaagtaacttga	6	6	3	5			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76788256	G	G	76788256	3	3	173	1	0	0	0	0	1	0	0	0	10199	101	4	5	3736	5	MYST4	10	76788256	Missense_Mutation	SNP	A	TCGA-50-6595-01A-12D-1855-08	1262523	76788256	58746491	110	141704											
KCNMA1	3778	broad.mit.edu	37	chr10	78674704	78674704	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgacccctacctagttcagtGatgatggggatgttgacccc	11	11	1	4			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78674704	A	A	78674704	2	1	173	1	0	0	0	0	0	0	0	1	8143	1280	45	4		4	KCNMA1	10	78674704	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	1886448	78674704	56860043	111	141705											
HPS1	3257	broad.mit.edu	37	chr10	100185491	100185491	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggctctgagggtaagggCcgagaggcgggtgaacgggg	23	6	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100185491	T	T	100185491	1	4	173	0	1	0	0	0	0	0	0	0	7406	754	26	4		4	HPS1	10	100185491	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	21510787	100185491	35349256	112	141706											
DNMBP	23268	broad.mit.edu	37	chr10	101731666	101731666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttgcccaggctggagtGcagtgccagcctttattttt	11	10	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101731666	T	T	101731666	1	4	173	0	1	0	0	0	0	0	0	0	4714	1334	46	3		3	DNMBP	10	101731666	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	1546175	101731666	33803081	113	141707											
SORCS1	114815	broad.mit.edu	37	chr10	108366980	108366980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggatcctgatagggtaGgacaaagagttcagcagtgg	15	6	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108366980	T	T	108366980	3	4	173	1	0	0	0	0	1	0	0	0	15044	991	35	2	647	2	SORCS1	10	108366980	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	6635314	108366980	27167767	114	141708											
PNLIP	5406	broad.mit.edu	37	chr10	118306827	118306827	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaagaagtttgctacgaaaGactcggctgcttcagtgatg	11	7	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118306827	A	A	118306827	3	1	173	1	0	0	0	0	1	0	0	0	12244	942	33	4	74	4	PNLIP	10	118306827	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	9939847	118306827	17227920	115	141709											
BAG3	9531	broad.mit.edu	37	chr10	121431869	121431869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcaccagctcccgcggGggtacatctccattccggtg	12	15	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121431869	T	T	121431869	3	4	173	1	0	0	0	0	1	0	0	0	1293	1232	43	2	620	2	BAG3	10	121431869	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	3125042	121431869	14102878	116	141710											
ADAM12	8038	broad.mit.edu	37	chr10	127806591	127806591	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctttccagaaacacaaaatCaggtatcccccttacccttc	4	15	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127806591	G	G	127806591	1	3	173	0	1	0	0	0	0	0	0	0	236	841	29	4		4	ADAM12	10	127806591	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	6374722	127806591	7728156	117	141711											
DPYSL4	10570	broad.mit.edu	37	chr10	134006229	134006229	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgcccacggcctgatggtcCttcctggtggcgttgacgtc	13	14	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134006229	G	G	134006229	3	3	173	1	0	0	0	0	1	0	0	0	4789	681	24	4	206	4	DPYSL4	10	134006229	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	6199638	134006229	1528518	118	141712											
ADAM8	101	broad.mit.edu	37	chr10	135084565	135084565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacggcacagctcaccagCcggcttcacctggcccagca	12	17	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135084565	A	A	135084565	3	1	173	1	0	0	0	0	1	0	0	0	252	739	26	3	1048	3	ADAM8	10	135084565	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	1078336	135084565	450182	119	141713											
LDHA	3939	broad.mit.edu	37	chr11	18427087	18427087	+	Frame_Shift_Del	DEL	A	-	-													agagtataatgaagaatcttAggcgggtgcacccagtttcc							TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18427087	-	-	18427087	7	5	173	1	0	1	0	1	0	0	0	0	8770	411	15	0	915	0	LDHA	11	18427087	Frame_Shift_Del	DEL	A	TCGA-50-6595-01A-12D-1855-08		18427087	116579429	120	141714											
RAG1	5896	broad.mit.edu	37	chr11	36597424	36597424	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggatgaatggcaactttgCcaggaagctcatgaccaaag	12	8	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36597424	T	T	36597424	3	4	173	1	0	0	0	0	1	0	0	0	13111	739	26	4	2572	4	RAG1	11	36597424	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	18170337	36597424	98409092	121	141715											
CD5	921	broad.mit.edu	37	chr11	60885646	60885646	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccacacctttctgacccccaGatttccaggcaaggctcacc	6	18	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60885646	C	C	60885646	5	2	173	1	0	0	0	0	0	0	1	0	3051	956	33	4	104	4	CD5	11	60885646	Splice_Site	SNP	G	TCGA-50-6595-01A-12D-1855-08	24288222	60885646	74120870	122	141716											
PGA5	5222	broad.mit.edu	37	chr11	61016134	61016134	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggggaacacactccaggGggaaggtggaagttggccaa	16	8	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61016134	A	A	61016134	1	1	173	0	1	0	0	0	0	0	0	0	11867	1247	43	4		4	PGA5	11	61016134	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	130488	61016134	73990382	123	141717											
PLCB3	5331	broad.mit.edu	37	chr11	64021894	64021894	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgctgtcctcaggagacctCcagtcggaacctggtgaccc	12	14	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64021894	T	T	64021894	3	4	173	1	0	0	0	0	1	0	0	0	12124	855	30	4	113	4	PLCB3	11	64021894	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	3005760	64021894	70984622	124	141718											
NRXN2	9379	broad.mit.edu	37	chr11	64444526	64444526	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcttcaccggagatatgGggggatggggaggagggggg	23	5	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64444526	A	A	64444526	1	1	173	0	1	0	0	0	0	0	0	0	10761	1247	43	4		4	NRXN2	11	64444526	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	422632	64444526	70561990	125	141719											
CDC42BPG	55561	broad.mit.edu	37	chr11	64603314	64603314	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggctcagggaggacacctGggcctccagctgtgaggggt	17	12	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64603314	C	C	64603314	3	2	173	1	0	0	0	0	1	0	0	0	3104	1357	47	4	3073	4	CDC42BPG	11	64603314	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	158788	64603314	70403202	126	141720											
ODZ4	26011	broad.mit.edu	37	chr11	78413335	78413335	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtgcatgggcctcccggcGacaatgcgcacctggtggtt	14	13	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78413335	T	T	78413335	2	4	173	1	0	0	0	0	0	0	0	1	10932	1045	37	3		3	ODZ4	11	78413335	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	13810021	78413335	56593181	127	141721											
NAALAD2	10003	broad.mit.edu	37	chr11	89883707	89883707	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actttttcaaactagaaagaGagatgggcatcaactgtact	8	7	2	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89883707	C	C	89883707	3	2	173	1	0	0	0	0	1	0	0	0	10222	943	33	4	559	4	NAALAD2	11	89883707	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	11470372	89883707	45122809	128	141722											
C11orf54	28970	broad.mit.edu	37	chr11	93494648	93494648	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaactctaatcaataatttGagtactaacatattgtttgt	4	5	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93494648	C	C	93494648	1	2	173	0	1	0	0	0	0	0	0	0	1661	1305	45	4		4	C11orf54	11	93494648	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	3610941	93494648	41511868	129	141723											
C11orf1	64776	broad.mit.edu	37	chr11	111750308	111750308	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcctcccagtgtctctgCtgctcaaaatttctcttcca	6	15	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111750308	T	T	111750308	2	4	173	1	0	0	0	0	0	0	0	1	1640	805	28	4		4	C11orf1	11	111750308	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	18255660	111750308	23256208	130	141724											
MPZL2	10205	broad.mit.edu	37	chr11	118133663	118133663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaactgctcaggtccccCgtctagaggacgaaaattcc	8	13	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118133663	A	A	118133663	3	1	173	1	0	0	0	0	1	0	0	0	9844	652	23	1	455	1	MPZL2	11	118133663	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	6383355	118133663	16872853	131	141725											
C2CD2L	9854	broad.mit.edu	37	chr11	118984675	118984675	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacccaccaagcgcagcactCtcatcatctctggtgtttcc	6	17	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118984675	T	T	118984675	3	4	173	1	0	0	0	0	1	0	0	0	2175	913	32	4	1649	4	C2CD2L	11	118984675	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	851012	118984675	16021841	132	141726											
C2CD2L	9854	broad.mit.edu	37	chr11	118984730	118984730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggagaggagctgggatGgggagaaagccctaatgggt	20	5	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118984730	T	T	118984730	1	4	173	0	1	0	0	0	0	0	0	0	2175	1363	47	2		2	C2CD2L	11	118984730	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	55	118984730	16021786	133	141727											
CD163L1	283316	broad.mit.edu	37	chr12	7521407	7521407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgataccactggctgcgacCcacagactcatatttctgca	7	13	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7521407	T	T	7521407	1	4	173	0	1	0	0	0	0	0	0	0	2998	638	22	4		4	CD163L1	12	7521407	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08		7521407	126330488	134	141728											
A2ML1	144568	broad.mit.edu	37	chr12	9013866	9013866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaacattctccttaaaCagttagatcaacaggctatc	5	10	3	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9013866	A	A	9013866	3	1	173	1	0	0	0	0	1	0	0	0	5	479	17	3	3585	3	A2ML1	12	9013866	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	1492459	9013866	124838029	135	141729											
CNTN1	1272	broad.mit.edu	37	chr12	41418892	41418892	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagaaccagttgaagagaaCttttcatagctgaagactct	8	7	2	5			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41418892	G	G	41418892	1	3	173	0	1	0	0	0	0	0	0	0	3672	580	20	4		4	CNTN1	12	41418892	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	32405026	41418892	92433003	136	141730											
PFKM	5213	broad.mit.edu	37	chr12	48501132	48501132	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgttcgtttggattaaactCtgtctctatttctaggaggc	9	8	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48501132	T	T	48501132	1	4	173	0	1	0	0	0	0	0	0	0	11860	928	32	4		4	PFKM	12	48501132	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	7082240	48501132	85350763	137	141731											
LASS5	91012	broad.mit.edu	37	chr12	50528561	50528561	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagctgagtcctggggatGcagagccctgtgtgttttcc	14	9	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50528561	A	A	50528561	1	1	173	0	1	0	0	0	0	0	0	0	8714	1334	46	4		4	LASS5	12	50528561	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	2027429	50528561	83323334	138	141732											
KRT6A	3853	broad.mit.edu	37	chr12	52884197	52884197	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttccttcttgacttgggcAtaagttctgcaaatgtctac	7	9	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52884197	G	G	52884197	1	3	173	0	1	0	0	0	0	0	0	0	8551	232	8	5		5	KRT6A	12	52884197	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	2355636	52884197	80967698	139	141733											
KRT3	3850	broad.mit.edu	37	chr12	53185017	53185017	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgccctccagcagcttgCggtaggtggcgatctccacg	12	16	1	0	rs60410063		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53185017	T	T	53185017	3	4	173	1	0	0	0	0	1	0	0	0	8537	768	27	4	390	4	KRT3	12	53185017	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	300820	53185017	80666878	140	141734											
PCBP2	5094	broad.mit.edu	37	chr12	53854970	53854970	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaatggggggagggccattCtggggacagagggactgatc	18	6	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53854970	G	G	53854970	1	3	173	0	1	0	0	0	0	0	0	0	11595	928	32	4		4	PCBP2	12	53854970	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	669953	53854970	79996925	141	141735											
PDE1B	5153	broad.mit.edu	37	chr12	54968993	54968993	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggccctcatggaggaattCttccgtcaggtagcgtggca	13	10	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54968993	G	G	54968993	3	3	173	1	0	0	0	0	1	0	0	0	11728	912	32	4	1271	4	PDE1B	12	54968993	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	1114023	54968993	78882902	142	141736											
ITGA7	3679	broad.mit.edu	37	chr12	56091221	56091221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagggtccaggtgccaccCgatcccacctcaccagaccg	10	19	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56091221	A	A	56091221	1	1	173	0	1	0	0	0	0	0	0	0	7951	667	23	1		1	ITGA7	12	56091221	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	1122228	56091221	77760674	143	141737											
STAT6	6778	broad.mit.edu	37	chr12	57500438	57500438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagatccaagaggcaacCactcctacacactccccaga	7	15	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57500438	A	A	57500438	1	1	173	0	1	0	0	0	0	0	0	0	15388	609	21	2		2	STAT6	12	57500438	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	1409217	57500438	76351457	144	141738											
MARS	4141	broad.mit.edu	37	chr12	57884172	57884172	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgagcctgaggtttggaatAgggcagagccttggggcctg	17	7	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57884172	T	T	57884172	1	4	173	0	1	0	0	0	0	0	0	0	9408	435	15	5		5	MARS	12	57884172	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	383734	57884172	75967723	145	141739											
SRGAP1	57522	broad.mit.edu	37	chr12	64472704	64472704	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttctattcccaggttaaGaaaacgactgaagccacctt	6	10	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64472704	A	A	64472704	2	1	173	1	0	0	0	0	0	0	0	1	15263	933	33	4		4	SRGAP1	12	64472704	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	6588532	64472704	69379191	146	141740											
WIF1	11197	broad.mit.edu	37	chr12	65445189	65445189	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggcctttttaagtgaaggCgtgtgctgcctgagctgggc	15	9	0	2	rs148339341		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65445189	T	T	65445189	2	4	173	1	0	0	0	0	0	0	0	1	17493	755	27	4		4	WIF1	12	65445189	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	972485	65445189	68406706	147	141741											
SLC35E3	55508	broad.mit.edu	37	chr12	69158481	69158481	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatccttatccaaaaacctCagctataacatgttcggaca	4	11	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69158481	T	T	69158481	1	4	173	0	1	0	0	0	0	0	0	0	14700	841	29	4		4	SLC35E3	12	69158481	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	3713292	69158481	64693414	148	141742											
NAV3	89795	broad.mit.edu	37	chr12	78415686	78415686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaaacctaggaatttccGtattctctccataagacttt	6	10	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78415686	A	A	78415686	1	1	173	0	1	0	0	0	0	0	0	0	10279	1160	40	4		4	NAV3	12	78415686	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	9257205	78415686	55436209	149	141743											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100453666	100453666	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactcgaacatcaacatgctCgtcagattttgaattgtcat	6	9	3	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100453666	A	A	100453666	4	1	173	1	0	0	0	0	0	1	0	0	17095	893	31	3	2725	3	UHRF1BP1L	12	100453666	Nonsense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	22037980	100453666	33398229	150	141744											
ANAPC7	51434	broad.mit.edu	37	chr12	110813919	110813919	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcctgatactcattgacaGctacaaggaaatctcctagg	7	12	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110813919	A	A	110813919	3	1	173	1	0	0	0	0	1	0	0	0	606	971	34	4	249	4	ANAPC7	12	110813919	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	10360253	110813919	23037976	151	141745											
NOC4L	79050	broad.mit.edu	37	chr12	132635787	132635787	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctccatccgctgctcctTccccccggcccgcagggagt	10	20	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132635787	C	C	132635787	1	2	173	0	1	0	0	0	0	0	0	0	10610	1798	62	5		5	NOC4L	12	132635787	Intron	SNP	T	TCGA-50-6595-01A-12D-1855-08	21821868	132635787	1216108	152	141746											
RNF6	6049	broad.mit.edu	37	chr13	26789520	26789520	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaatgtctgtataatcttCtccatgaatttcaaatcctc	5	9	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26789520	G	G	26789520	3	3	173	1	0	0	0	0	1	0	0	0	13609	922	32	4	1562	4	RNF6	13	26789520	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08		26789520	88380358	153	141747											
PDS5B	23047	broad.mit.edu	37	chr13	33315184	33315184	+	Intron	DEL	C	-	-													tcatatttacattttaaagtCcctggtttttttttttttct							TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33315184	-	-	33315184	6	5	173	0	1	1	0	1	0	0	0	0	11786	870	30	0		0	PDS5B	13	33315184	Intron	DEL	C	TCGA-50-6595-01A-12D-1855-08	6525664	33315184	81854694	154	141748											
RCBTB1	55213	broad.mit.edu	37	chr13	50118929	50118929	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttccatcaattcgaaacttCagatcagcagtttctggact	6	10	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50118929	A	A	50118929	2	1	173	1	0	0	0	0	0	0	0	1	13279	813	29	3		3	RCBTB1	13	50118929	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	16803745	50118929	65050949	155	141749											
FARP1	10160	broad.mit.edu	37	chr13	99076821	99076821	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaaccctttgcttttgctCtcagggaaggccgctcaaat	8	13	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99076821	T	T	99076821	1	4	173	0	1	0	0	0	0	0	0	0	5733	928	32	4		4	FARP1	13	99076821	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	48957892	99076821	16093057	156	141750											
MYO16	23026	broad.mit.edu	37	chr13	109707855	109707855	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataatttttacgtgtctgctCagctacaatatattggggtc	8	7	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109707855	T	T	109707855	4	4	173	1	0	0	0	0	0	1	0	0	10158	827	29	4	3283	4	MYO16	13	109707855	Nonsense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	10631034	109707855	5462023	157	141751											
MTHFD1	4522	broad.mit.edu	37	chr14	64911421	64911421	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccttccaggtcactgctgGactgcctcttcccaaggctt	8	15	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64911421	A	A	64911421	3	1	173	1	0	0	0	0	1	0	0	0	10021	1174	41	4	2233	4	MTHFD1	14	64911421	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08		64911421	42438119	158	141752											
TTLL5	23093	broad.mit.edu	37	chr14	76198575	76198575	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccacttgctacttacactCagtgagtttctaggcctggg	9	11	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76198575	G	G	76198575	1	3	173	0	1	0	0	0	0	0	0	0	16856	841	29	4		4	TTLL5	14	76198575	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	11287154	76198575	31150965	159	141753											
C14orf145	145508	broad.mit.edu	37	chr14	81251329	81251329	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctgttcgtgttttgttttCacactctgcaatgatgatgt	8	7	3	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81251329	A	A	81251329	2	1	173	1	0	0	0	0	0	0	0	1	1762	813	29	3		3	C14orf145	14	81251329	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	5052754	81251329	26098211	160	141754											
OR4N4	283694	broad.mit.edu	37	chr15	22333111	22333111	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacacttcggccagggccaGaacaagttcctctctacctg	8	15	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22333111	A	A	22333111	1	1	173	0	1	0	0	0	0	0	0	0	11172	957	33	4		4	OR4N4	15	22333111	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08		22333111	80198281	161	141755											
GABRG3	2567	broad.mit.edu	37	chr15	27772717	27772717	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgcgctgatggagtatgCcaccctcaactactattcca	8	15	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27772717	T	T	27772717	3	4	173	1	0	0	0	0	1	0	0	0	6233	739	26	4	1034	4	GABRG3	15	27772717	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	5439606	27772717	74758675	162	141756											
FMN1	342184	broad.mit.edu	37	chr15	33359007	33359007	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggcgactcagggtctgctCccttcggttcagttttgggc	14	11	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33359007	T	T	33359007	3	4	173	1	0	0	0	0	1	0	0	0	6007	855	30	4	2579	4	FMN1	15	33359007	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	5586290	33359007	69172385	163	141757											
TMEM87A	25963	broad.mit.edu	37	chr15	42511775	42511775	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaaatggaaaagtcatacTtactgctttgttaactttac	6	7	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42511775	C	C	42511775	1	2	173	0	1	0	0	0	0	0	0	0	16333	1624	56	5		5	TMEM87A	15	42511775	Intron	SNP	T	TCGA-50-6595-01A-12D-1855-08	9152768	42511775	60019617	164	141758											
MYO5A	4644	broad.mit.edu	37	chr15	52606269	52606269	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaataaattacaaaatgtCcattcaaaagactgtgttgg	6	6	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52606269	T	T	52606269	1	4	173	0	1	0	0	0	0	0	0	0	10172	870	30	4		4	MYO5A	15	52606269	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	10094494	52606269	49925123	165	141759											
KIAA1370	56204	broad.mit.edu	37	chr15	52892439	52892439	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatggtcgaggactattaGaaaaacaaatcagcaaaaga	8	6	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52892439	A	A	52892439	1	1	173	0	1	0	0	0	0	0	0	0	8296	957	33	4		4	KIAA1370	15	52892439	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	286170	52892439	49638953	166	141760											
SLTM	79811	broad.mit.edu	37	chr15	59192058	59192058	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatctcttcatgagctgtgTgatcagcctcagctaggctc	9	13	4	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59192058	C	C	59192058	3	2	173	1	0	0	0	0	1	0	0	0	14868	1696	59	5	2496	5	SLTM	15	59192058	Missense_Mutation	SNP	T	TCGA-50-6595-01A-12D-1855-08	6299619	59192058	43339334	167	141761											
TBC1D2B	23102	broad.mit.edu	37	chr15	78295883	78295883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcctgccaggtcaccggGtaagcagacgagcagacgcg	15	13	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78295883	T	T	78295883	1	4	173	0	1	0	0	0	0	0	0	0	15738	1276	44	3		3	TBC1D2B	15	78295883	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	19103825	78295883	24235509	168	141762											
TMC3	342125	broad.mit.edu	37	chr15	81660570	81660570	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtgagccaccgcgcccAgccacatgtgtgttctgtat	12	12	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81660570	T	T	81660570	1	4	173	0	1	0	0	0	0	0	0	0	16109	203	7	5		5	TMC3	15	81660570	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	3364687	81660570	20870822	169	141763											
PIGQ	9091	broad.mit.edu	37	chr16	630192	630192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccctacagctgttcatcGggactctgctcttcaccatc	6	17	4	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	630192	T	T	630192	3	4	173	1	0	0	0	0	1	0	0	0	11991	1116	39	1	1371	1	PIGQ	16	630192	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08		630192	89724561	170	141764											
PKD1	5310	broad.mit.edu	37	chr16	2160594	2160594	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattccagccggccaccctaAcggtgaagtcacctgtgctg	10	15	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2160594	C	C	2160594	3	2	173	1	0	0	0	0	1	0	0	0	12058	43	2	5	8465	5	PKD1	16	2160594	Missense_Mutation	SNP	A	TCGA-50-6595-01A-12D-1855-08	1530402	2160594	88194159	171	141765											
CCDC135	84229	broad.mit.edu	37	chr16	57733886	57733886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccatgtgccagatctgGgcatcaccttcccagccaag	10	15	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57733886	T	T	57733886	1	4	173	0	1	0	0	0	0	0	0	0	2795	1247	43	2		2	CCDC135	16	57733886	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	55573292	57733886	32620867	172	141766											
USP10	9100	broad.mit.edu	37	chr16	84792372	84792372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagtgtcgttgcaacccCgtgggctgatcaataaaggg	12	10	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84792372	A	A	84792372	3	1	173	1	0	0	0	0	1	0	0	0	17167	652	23	1	1261	1	USP10	16	84792372	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	27058486	84792372	5562381	173	141767											
OR1G1	8390	broad.mit.edu	37	chr17	3030851	3030851	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttcccctccatttgtcTgtaggaagaaagttgggtta	9	7	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3030851	C	C	3030851	1	2	173	0	1	0	0	0	0	0	0	0	11051	1595	55	5		5	OR1G1	17	3030851	5'Flank	SNP	T	TCGA-50-6595-01A-12D-1855-08		3030851	78164359	174	141768											
TP53	7157	broad.mit.edu	37	chr17	7578382	7578382	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgctcaccatcgctatctGagcagcgctcatggtggggg	14	12	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578382	C	C	7578382	4	2	173	1	0	0	0	0	0	1	0	0	16505	1294	45	4	750	4	TP53	17	7578382	Nonsense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	4547531	7578382	73616828	175	141769											
TP53	7157	broad.mit.edu	37	chr17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgctcatggtgggggcagCgcctcacaacctccgtcatg	13	14	3	0	rs28934578		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7578406	T	T	7578406	3	4	173	1	0	0	0	0	1	0	0	0	16505	768	27	4	774	4	TP53	17	7578406	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	24	7578406	73616804	176	141770											
TEKT3	64518	broad.mit.edu	37	chr17	15207417	15207417	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctctgcatccctcaggcGctgctgcagggtctggatgg	14	13	3	0	rs148345040	byFrequency	TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15207417	A	A	15207417	3	1	173	1	0	0	0	0	1	0	0	0	15876	1087	38	4	167	4	TEKT3	17	15207417	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	7629011	15207417	65987793	177	141771											
SMCR8	140775	broad.mit.edu	37	chr17	18219416	18219416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaccaggcttccttcgtgGgccatcctcctggatctgcc	9	15	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18219416	A	A	18219416	3	1	173	1	0	0	0	0	1	0	0	0	14906	1232	43	4	315	4	SMCR8	17	18219416	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	3011999	18219416	62975794	178	141772											
KIAA0100	9703	broad.mit.edu	37	chr17	26942074	26942074	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtactgcagccactcgaaTcgccaaatcatttgcgcctg	8	14	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26942074	A	A	26942074	1	1	173	0	1	0	0	0	0	0	0	0	8224	1450	50	5		5	KIAA0100	17	26942074	3'UTR	SNP	T	TCGA-50-6595-01A-12D-1855-08	8722658	26942074	54253136	179	141773											
GSDMA	284110	broad.mit.edu	37	chr17	38122732	38122732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcccgggatgtgggtgGggcagtgcatggaaatggtg	20	6	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38122732	T	T	38122732	1	4	173	0	1	0	0	0	0	0	0	0	6882	1247	43	2		2	GSDMA	17	38122732	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	11180658	38122732	43072478	180	141774											
KRT23	25984	broad.mit.edu	37	chr17	39092763	39092763	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaccgccatggacggtgggAgccctggggaagctcctggg	18	12	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39092763	G	G	39092763	2	3	173	1	0	0	0	0	0	0	0	1	8531	291	11	5		5	KRT23	17	39092763	Silent	SNP	A	TCGA-50-6595-01A-12D-1855-08	970031	39092763	42102447	181	141775											
MED13	9969	broad.mit.edu	37	chr17	60039133	60039133	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaacaggtactgacaaGgaataatctaagaagtatag	10	5	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60039133	A	A	60039133	3	1	173	1	0	0	0	0	1	0	0	0	9523	1000	35	4	1488	4	MED13	17	60039133	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	20946370	60039133	21156077	182	141776											
TANC2	26115	broad.mit.edu	37	chr17	61483718	61483718	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatttccagcaatggatcccAggagatgctaagaacagata	10	8	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61483718	C	C	61483718	1	2	173	0	1	0	0	0	0	0	0	0	15664	203	7	5		5	TANC2	17	61483718	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	1444585	61483718	19711492	183	141777											
ACE	1636	broad.mit.edu	37	chr17	61559918	61559918	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actacctgcagtacaaggatCtgcccgtctccctgcgtcgg	10	15	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61559918	G	G	61559918	3	3	173	1	0	0	0	0	1	0	0	0	136	912	32	4	1240	4	ACE	17	61559918	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	76200	61559918	19635292	184	141778											
ACE	1636	broad.mit.edu	37	chr17	61561181	61561181	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttcctggccccccatgatCttccctgactcccaccctgt	6	19	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61561181	G	G	61561181	1	3	173	0	1	0	0	0	0	0	0	0	136	928	32	4		4	ACE	17	61561181	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	1263	61561181	19634029	185	141779											
GRB2	2885	broad.mit.edu	37	chr17	73316467	73316467	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttagacgttccggttcacGggggtgacataattgcgggg	15	8	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73316467	T	T	73316467	2	4	173	1	0	0	0	0	0	0	0	1	6824	1103	39	1		1	GRB2	17	73316467	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	11755286	73316467	7878743	186	141780											
DSG2	1829	broad.mit.edu	37	chr18	29104409	29104409	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatttttcattgctctgcAggaacacagcagctacactt	7	11	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29104409	G	G	29104409	5	3	173	1	0	0	0	0	0	0	1	0	4817	202	7	5	715	5	DSG2	18	29104409	Splice_Site	SNP	A	TCGA-50-6595-01A-12D-1855-08		29104409	48972839	187	141781											
DCC	1630	broad.mit.edu	37	chr18	50589599	50589599	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcccagagcagtgttttaaActcagtgaagacctcagcag	9	10	2	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50589599	G	G	50589599	1	3	173	0	1	0	0	0	0	0	0	0	4315	58	2	5		5	DCC	18	50589599	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	21485190	50589599	27487649	188	141782											
WDR7	23335	broad.mit.edu	37	chr18	54385184	54385184	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacacaattaaggtttattCttcttttcaggcaagagtac	6	7	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54385184	T	T	54385184	1	4	173	0	1	0	0	0	0	0	0	0	17447	928	32	4		4	WDR7	18	54385184	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	3795585	54385184	23692064	189	141783											
PTPRS	5802	broad.mit.edu	37	chr19	5220963	5220963	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcttgccccagccatatagTaggctgatgggggtgacaag	15	9	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5220963	A	A	5220963	1	1	173	0	1	0	0	0	0	0	0	0	12919	1653	57	5		5	PTPRS	19	5220963	Intron	SNP	T	TCGA-50-6595-01A-12D-1855-08		5220963	53908020	190	141784											
CD209	30835	broad.mit.edu	37	chr19	7808151	7808151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcccatgcggaatgtgaGcctctgtccccgccagctac	10	15	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7808151	T	T	7808151	1	4	173	0	1	0	0	0	0	0	0	0	3014	986	34	3		3	CD209	19	7808151	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	2587188	7808151	51320832	191	141785											
MUC16	94025	broad.mit.edu	37	chr19	8968945	8968945	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtttcggaagagttggttGagctgaaagacagggcgatg	16	5	0	4			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8968945	T	T	8968945	2	4	173	1	0	0	0	0	0	0	0	1	10067	1277	45	3		3	MUC16	19	8968945	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	1160794	8968945	50160038	192	141786											
COL5A3	50509	broad.mit.edu	37	chr19	10089213	10089213	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacaccttgagtcccctcCaccctgcccccacccagcac	5	22	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10089213	T	T	10089213	1	4	173	0	1	0	0	0	0	0	0	0	3730	609	21	4		4	COL5A3	19	10089213	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	1120268	10089213	49039770	193	141787											
TNPO2	30000	broad.mit.edu	37	chr19	12813730	12813730	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacataaggctgcatctctgCccctgggggagcacccagtc	11	15	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12813730	T	T	12813730	3	4	173	1	0	0	0	0	1	0	0	0	16459	739	26	4	501	4	TNPO2	19	12813730	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	2724517	12813730	46315253	194	141788											
LPHN1	22859	broad.mit.edu	37	chr19	14262269	14262269	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgagatgatcatcttctCaaaggccgccgcatcggcta	9	13	4	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14262269	T	T	14262269	3	4	173	1	0	0	0	0	1	0	0	0	9002	835	29	4	587	4	LPHN1	19	14262269	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	1448539	14262269	44866714	195	141789											
CPAMD8	27151	broad.mit.edu	37	chr19	17056292	17056292	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaccacacactccagctGggcccagcttcatggctgaa	9	15	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17056292	A	A	17056292	1	1	173	0	1	0	0	0	0	0	0	0	3827	1363	47	4		4	CPAMD8	19	17056292	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	2794023	17056292	42072691	196	141790											
RFXANK	8625	broad.mit.edu	37	chr19	19312474	19312474	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagtgcaacaggtgatcgaGaaccacatcctcaagctctt	8	12	3	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19312474	A	A	19312474	2	1	173	1	0	0	0	0	0	0	0	1	13377	933	33	4		4	RFXANK	19	19312474	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	2256182	19312474	39816509	197	141791											
ARHGAP33	115703	broad.mit.edu	37	chr19	36275303	36275303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggtgggctcccagtccCgtccccaccccactgaagct	11	18	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36275303	A	A	36275303	1	1	173	0	1	0	0	0	0	0	0	0	884	667	23	1		1	ARHGAP33	19	36275303	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	16962829	36275303	22853680	198	141792											
IL29	282618	broad.mit.edu	37	chr19	39789087	39789087	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctcttccgcctcctcacGcgagacctcaaatatgtggc	7	16	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39789087	A	A	39789087	2	1	173	1	0	0	0	0	0	0	0	1	7755	1074	38	4		4	IL29	19	39789087	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	3513784	39789087	19339896	199	141793											
EGLN2	112398	broad.mit.edu	37	chr19	41292951	41292951	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggagatggtgtggagataGacactgaacatgtgatgaca	16	4	0	6			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41292951	C	C	41292951	1	2	173	0	1	0	0	0	0	0	0	0	5009	957	33	4		4	EGLN2	19	41292951	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	1503864	41292951	17836032	200	141794											
PSG6	5675	broad.mit.edu	37	chr19	43571185	43571185	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatttcaaattcaccacctCttgtgcacagaaagcttctt	5	12	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43571185	T	T	43571185	1	4	173	0	1	0	0	0	0	0	0	0	12765	928	32	4		4	PSG6	19	43571185	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	2278234	43571185	15557798	201	141795											
ZNF428	126299	broad.mit.edu	37	chr19	44112203	44112203	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctcctcctcatcttcttCctcttcggagtccggctctg	6	18	5	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44112203	T	T	44112203	3	4	173	1	0	0	0	0	1	0	0	0	18028	864	30	4	437	4	ZNF428	19	44112203	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	541018	44112203	15016780	202	141796											
ZNF226	7769	broad.mit.edu	37	chr19	44681620	44681620	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgatgtgtgtggtaaagtCttcagtcggtcttcacaact	11	7	4	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44681620	T	T	44681620	2	4	173	1	0	0	0	0	0	0	0	1	17906	900	32	4		4	ZNF226	19	44681620	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	569417	44681620	14447363	203	141797											
KCNA7	3743	broad.mit.edu	37	chr19	49575293	49575293	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccccgcctctcaccgggcCggctgcggctgcagcagcaa	13	19	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49575293	T	T	49575293	3	4	173	1	0	0	0	0	1	0	0	0	8078	652	23	4	828	4	KCNA7	19	49575293	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	4893673	49575293	9553690	204	141798											
ZNF473	25888	broad.mit.edu	37	chr19	50548237	50548237	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgaaaagaccctcacAccagctaagtctaaggaata	7	10	3	2	rs142027756		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50548237	T	T	50548237	2	4	173	1	0	0	0	0	0	0	0	1	18058	146	6	5		5	ZNF473	19	50548237	Silent	SNP	A	TCGA-50-6595-01A-12D-1855-08	972944	50548237	8580746	205	141799											
SIGLEC9	27180	broad.mit.edu	37	chr19	51628848	51628848	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcctgagtccccctctcttCaccagccttgacccacaggc	6	19	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51628848	T	T	51628848	1	4	173	0	1	0	0	0	0	0	0	0	14428	841	29	4		4	SIGLEC9	19	51628848	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	1080611	51628848	7500135	206	141800											
SIGLEC12	89858	broad.mit.edu	37	chr19	52003092	52003092	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcttcacctccaactccctCccaggatgggggtcccacct	8	18	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52003092	A	A	52003092	1	1	173	0	1	0	0	0	0	0	0	0	14421	870	30	3		3	SIGLEC12	19	52003092	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	374244	52003092	7125891	207	141801											
LILRA4	23547	broad.mit.edu	37	chr19	54845127	54845127	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccagggtacccacctcccCttgacaggacctgaccctct	7	19	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54845127	G	G	54845127	1	3	173	0	1	0	0	0	0	0	0	0	8859	696	24	4		4	LILRA4	19	54845127	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	2842035	54845127	4283856	208	141802											
LENG8	114823	broad.mit.edu	37	chr19	54967153	54967153	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtattctcaggctgaccCgggagcctgtggctgagagc	15	11	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54967153	A	A	54967153	2	1	173	1	0	0	0	0	0	0	0	1	8796	643	23	1		1	LENG8	19	54967153	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	122026	54967153	4161830	209	141803											
LILRA2	11027	broad.mit.edu	37	chr19	55086091	55086091	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagccccaggctctgccctCaggaagggggtcggctctca	13	16	3	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55086091	T	T	55086091	1	4	173	0	1	0	0	0	0	0	0	0	8857	841	29	4		4	LILRA2	19	55086091	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	118938	55086091	4042892	210	141804											
NLRP5	126206	broad.mit.edu	37	chr19	56539579	56539579	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtcccgttcccctgggGgtgaagcagaagcttctgca	14	12	1	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56539579	C	C	56539579	2	2	173	1	0	0	0	0	0	0	0	1	10575	1219	43	4		4	NLRP5	19	56539579	Silent	SNP	G	TCGA-50-6595-01A-12D-1855-08	1453488	56539579	2589404	211	141805											
ZIM3	114026	broad.mit.edu	37	chr19	57649755	57649755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgaggagcacctctgtGccaaccctatttggccagcc	11	13	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57649755	T	T	57649755	1	4	173	0	1	0	0	0	0	0	0	0	17811	1334	46	3		3	ZIM3	19	57649755	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	1110176	57649755	1479228	212	141806											
ZNF304	57343	broad.mit.edu	37	chr19	57869098	57869098	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttacgtatgcagcgaatgtGggaaagcctatagcagaagc	12	8	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57869098	C	C	57869098	3	2	173	1	0	0	0	0	1	0	0	0	17959	1348	47	4	1871	4	ZNF304	19	57869098	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	219343	57869098	1259885	213	141807											
ZSCAN1	284312	broad.mit.edu	37	chr19	58551960	58551960	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcaccccagggcatgcGtgccgcttctgggacggcct	13	16	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58551960	A	A	58551960	1	1	173	0	1	0	0	0	0	0	0	0	18355	1160	40	4		4	ZSCAN1	19	58551960	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	682862	58551960	577023	214	141808											
PPP1R16B	26051	broad.mit.edu	37	chr20	37535588	37535588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggctttctgagctctgggCagggggacacatgagcttct	14	9	3	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37535588	T	T	37535588	1	4	173	0	1	0	0	0	0	0	0	0	12467	725	25	4		4	PPP1R16B	20	37535588	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08		37535588	25489932	215	141809											
PTPRT	11122	broad.mit.edu	37	chr20	40735283	40735283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtctcaccatagtaagcCacgtgtctactccctcctgc	7	15	2	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40735283	A	A	40735283	1	1	173	0	1	0	0	0	0	0	0	0	12920	609	21	2		2	PTPRT	20	40735283	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	3199695	40735283	22290237	216	141810											
EYA2	2139	broad.mit.edu	37	chr20	45789717	45789717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtagcagtcatagataccCgccatcagcagcagcttttg	10	12	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45789717	A	A	45789717	1	1	173	0	1	0	0	0	0	0	0	0	5372	667	23	1		1	EYA2	20	45789717	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	5054434	45789717	17235803	217	141811											
TH1L	51497	broad.mit.edu	37	chr20	57568005	57568005	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgcttttctagcatattTtgtgttttaaattgtttttt	5	3	1	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57568005	G	G	57568005	1	3	173	0	1	0	0	0	0	0	0	0	15962	1856	64	5		5	TH1L	20	57568005	Intron	SNP	T	TCGA-50-6595-01A-12D-1855-08	11778288	57568005	5457515	218	141812											
BIRC7	79444	broad.mit.edu	37	chr20	61870003	61870003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgctgactccttgtgcGcctgcagcctgtgcttggcc	11	17	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61870003	T	T	61870003	1	4	173	0	1	0	0	0	0	0	0	0	1445	1102	38	3		3	BIRC7	20	61870003	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	4301998	61870003	1155517	219	141813											
GMEB2	26205	broad.mit.edu	37	chr20	62234350	62234350	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacattgatgccgggacacaCaaacttcctccagatgaggt	9	12	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62234350	G	G	62234350	3	3	173	1	0	0	0	0	1	0	0	0	6552	478	17	4	1295	4	GMEB2	20	62234350	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	364347	62234350	791170	220	141814											
ZGPAT	84619	broad.mit.edu	37	chr20	62364617	62364617	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatgagctgcgccccttcCaggacccagacctgagctcc	11	16	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62364617	T	T	62364617	4	4	173	1	0	0	0	0	0	1	0	0	17800	595	21	4	637	4	ZGPAT	20	62364617	Nonsense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	130267	62364617	660903	221	141815											
NRIP1	8204	broad.mit.edu	37	chr21	16338607	16338607	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatgactgcattccacatTgtgctaaattttgtaacagc	8	8	0	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16338607	C	C	16338607	3	2	173	1	0	0	0	0	1	0	0	0	10747	1812	63	5	1573	5	NRIP1	21	16338607	Missense_Mutation	SNP	T	TCGA-50-6595-01A-12D-1855-08		16338607	31791288	222	141816											
APP	351	broad.mit.edu	37	chr21	27372472	27372472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcattgctcggcacggcccCgtctcggcttgttcagagca	11	14	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27372472	A	A	27372472	2	1	173	1	0	0	0	0	0	0	0	1	817	639	23	1		1	APP	21	27372472	Silent	SNP	C	TCGA-50-6595-01A-12D-1855-08	11033865	27372472	20757423	223	141817											
PCNT	5116	broad.mit.edu	37	chr21	47768890	47768890	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctttagcacagataatcAactattgagtttaatttttt	4	5	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47768890	T	T	47768890	1	4	173	0	1	0	0	0	0	0	0	0	11684	145	5	5		5	PCNT	21	47768890	Intron	SNP	A	TCGA-50-6595-01A-12D-1855-08	20396418	47768890	361005	224	141818											
CYTH4	27128	broad.mit.edu	37	chr22	37707484	37707484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccctgaccttccttccCctttccctgtaggacaagga	7	16	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37707484	T	T	37707484	1	4	173	0	1	0	0	0	0	0	0	0	4239	638	22	4		4	CYTH4	22	37707484	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08		37707484	13597082	225	141819											
GTPBP1	9567	broad.mit.edu	37	chr22	39112766	39112766	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgccagaaactcttccgcCacaaacatgaaattgaatct	5	14	2	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39112766	T	T	39112766	3	4	173	1	0	0	0	0	1	0	0	0	6943	594	21	4	609	4	GTPBP1	22	39112766	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	1405282	39112766	12191800	226	141820											
TUBGCP6	85378	broad.mit.edu	37	chr22	50660468	50660468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcttacctgggggtgcaCgctcaagaggacgtctggcg	16	12	2	1	rs143355923		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50660468	A	A	50660468	3	1	173	1	0	0	0	0	1	0	0	0	16896	536	19	3	3030	3	TUBGCP6	22	50660468	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	11547702	50660468	644098	227	141821											
CLCN4	1183	broad.mit.edu	37	chrX	10163199	10163199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatgcgtgcttgggaatGctgctgggagatttgtgaat	14	6	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10163199	T	T	10163199	1	4	173	0	1	0	0	0	0	0	0	0	3496	1334	46	3		3	CLCN4	23	10163199	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08		10163199	145107361	228	141822											
PHKA2	5256	broad.mit.edu	37	chrX	18926137	18926137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggttttgaacggtgacccCgtgctgtccagagagatttg	13	8	0	4			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18926137	A	A	18926137	3	1	173	1	0	0	0	0	1	0	0	0	11939	652	23	1	1357	1	PHKA2	23	18926137	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	8762938	18926137	136344423	229	141823											
PHKA2	5256	broad.mit.edu	37	chrX	18938213	18938213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatcaggactgaaagtccCttcgctggcattgtcaaaca	8	11	2	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18938213	A	A	18938213	3	1	173	1	0	0	0	0	1	0	0	0	11939	681	24	2	1871	2	PHKA2	23	18938213	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	12076	18938213	136332347	230	141824											
GPR34	2857	broad.mit.edu	37	chrX	41555240	41555240	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtatcatattaaccaaaaCaagtggacactaggtgtgat	8	6	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41555240	G	G	41555240	3	3	173	1	0	0	0	0	1	0	0	0	6754	477	17	4	356	4	GPR34	23	41555240	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	22617027	41555240	113715320	231	141825											
RP2	6102	broad.mit.edu	37	chrX	46713257	46713257	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatttggatgttttcaatGgtactatcctgaattagctt	7	6	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46713257	A	A	46713257	4	1	173	1	0	0	0	0	0	1	0	0	13645	1357	47	4	455	4	RP2	23	46713257	Nonsense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	5158017	46713257	108557303	232	141826											
HUWE1	10075	broad.mit.edu	37	chrX	53672299	53672299	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agccgagttagcagcggggtCctcttgtcagatcccagacg	13	12	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53672299	G	G	53672299	3	3	173	1	0	0	0	0	1	0	0	0	7531	854	30	4	12968	4	HUWE1	23	53672299	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	6959042	53672299	101598261	233	141827											
SPIN3	169981	broad.mit.edu	37	chrX	57020822	57020822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggaatcttgaaggatgcGgaggtcaccatctttataat	10	6	3	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57020822	T	T	57020822	3	4	173	1	0	0	0	0	1	0	0	0	15173	1116	39	1	221	1	SPIN3	23	57020822	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	3348523	57020822	98249738	234	141828											
TEX11	56159	broad.mit.edu	37	chrX	69960640	69960640	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggctaatagccgtagaaCtttagcctgtaagaaaaaaa	9	7	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69960640	T	T	69960640	3	4	173	1	0	0	0	0	1	0	0	0	15896	565	20	4	2103	4	TEX11	23	69960640	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	12939818	69960640	85309920	235	141829											
ATRX	546	broad.mit.edu	37	chrX	76937732	76937732	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaagattcatactgttgttCcattttaattacttttttct	4	6	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76937732	T	T	76937732	3	4	173	1	0	0	0	0	1	0	0	0	1212	864	30	4	4570	4	ATRX	23	76937732	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	6977092	76937732	78332828	236	141830											
CYLC1	1538	broad.mit.edu	37	chrX	83141485	83141485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttcgtgtgatccttaaCacatcatagttgtcttgatt	7	8	2	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83141485	A	A	83141485	1	1	173	0	1	0	0	0	0	0	0	0	4174	493	17	3		3	CYLC1	23	83141485	Intron	SNP	C	TCGA-50-6595-01A-12D-1855-08	6203753	83141485	72129075	237	141831											
DACH2	117154	broad.mit.edu	37	chrX	86067912	86067912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccttggacaagatacagCtgactcctgggcaggcattg	11	12	0	2			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86067912	A	A	86067912	3	1	173	1	0	0	0	0	1	0	0	0	4254	796	28	3	1324	3	DACH2	23	86067912	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	2926427	86067912	69202648	238	141832											
DACH2	117154	broad.mit.edu	37	chrX	86069769	86069769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggaatttgaatcaaagcGccgggagcaagtggagcagg	15	7	1	1	rs143491219		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86069769	T	T	86069769	3	4	173	1	0	0	0	0	1	0	0	0	4254	1087	38	3	1654	3	DACH2	23	86069769	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	1857	86069769	69200791	239	141833											
RAB40A	142684	broad.mit.edu	37	chrX	102755560	102755560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccccgagatggctgtacGgggactcagctgcaccatcc	11	16	1	1	rs61739206	byFrequency	TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102755560	T	T	102755560	3	4	173	1	0	0	0	0	1	0	0	0	13047	1116	39	1	712	1	RAB40A	23	102755560	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	16685791	102755560	52515000	240	141834											
COL4A5	1287	broad.mit.edu	37	chrX	107802324	107802324	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttccaggtttggaaggaCacccaggattgcctggattt	13	8	0	0			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107802324	T	T	107802324	3	4	173	1	0	0	0	0	1	0	0	0	3726	478	17	4	182	4	COL4A5	23	107802324	Missense_Mutation	SNP	C	TCGA-50-6595-01A-12D-1855-08	5046764	107802324	47468236	241	141835											
PAK3	5063	broad.mit.edu	37	chrX	110459621	110459621	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattttaatatgtatgtgctGaatggatttttctatttttt	7	2	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110459621	A	A	110459621	1	1	173	0	1	0	0	0	0	0	0	0	11496	1305	45	4		4	PAK3	23	110459621	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	2657297	110459621	44810939	242	141836											
NKAP	79576	broad.mit.edu	37	chrX	119064115	119064115	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcaccttcaccaggtaacaGagcatggccatagctacaaa	8	12	1	1			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119064115	C	C	119064115	3	2	173	1	0	0	0	0	1	0	0	0	10534	933	33	4	318	4	NKAP	23	119064115	Missense_Mutation	SNP	G	TCGA-50-6595-01A-12D-1855-08	8604494	119064115	36206445	243	141837											
BCORL1	63035	broad.mit.edu	37	chrX	129173294	129173294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacactgttgtccttggGgccagcctctgattcctgaa	10	12	1	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129173294	T	T	129173294	1	4	173	0	1	0	0	0	0	0	0	0	1392	1247	43	2		2	BCORL1	23	129173294	Intron	SNP	G	TCGA-50-6595-01A-12D-1855-08	10109179	129173294	26097266	244	141838											
SLITRK4	139065	broad.mit.edu	37	chrX	142717050	142717050	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accgttaaaatgaggaccacTaagatacttaagattaaaat	6	6	0	3			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142717050	A	A	142717050	3	1	173	1	0	0	0	0	1	0	0	0	14859	1519	53	5	642	5	SLITRK4	23	142717050	Missense_Mutation	SNP	T	TCGA-50-6595-01A-12D-1855-08	13543756	142717050	12553510	245	141839											
CLCNKB	1188	broad.mit.edu	37	chr1	16383338	16383338	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctctacatccccccgcAcctccaccccctttctctgt	2	24	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16383338	C	C	16383338	1	2	174	0	1	0	0	0	0	0	0	0	3501	174	6	5		5	CLCNKB	1	16383338	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08		16383338	232867283	1	141840											
FAM46B	115572	broad.mit.edu	37	chr1	27332767	27332767	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcgccgctgctccaccaGgtctggaaagtcgatgaaga	14	11	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27332767	A	A	27332767	2	1	174	1	0	0	0	0	0	0	0	1	5617	991	35	4		4	FAM46B	1	27332767	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	10949429	27332767	221917854	2	141841											
SNHG3-RCC1	751867	broad.mit.edu	37	chr1	28833869	28833869	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaaatttatgcgttacActgattgtccaacgtggata	8	7	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28833869	G	G	28833869	1	3	174	0	1	0	0	0	0	0	0	0	14961	174	6	5		5	SNHG3-RCC1	1	28833869	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	1501102	28833869	220416752	3	141842											
LEPRE1	64175	broad.mit.edu	37	chr1	43212925	43212925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaccagctgctctcaccCgctcgagctgctctcacccg	8	20	2	0	rs137853890		TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43212925	A	A	43212925	1	1	174	0	1	0	0	0	0	0	0	0	8801	666	23	1		1	LEPRE1	1	43212925	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	14379056	43212925	206037696	4	141843											
NASP	4678	broad.mit.edu	37	chr1	46083204	46083204	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaagagccggaggtgaacGgaggcagtggggatgctgtc	18	7	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46083204	A	A	46083204	3	1	174	1	0	0	0	0	1	0	0	0	10266	1117	39	4	2358	4	NASP	1	46083204	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	2870279	46083204	203167417	5	141844											
TMEM48	55706	broad.mit.edu	37	chr1	54284761	54284761	+	Intron	DEL	A	-	-													gaacttgtattgctgtggggAaaaaaaaaagaatcaaatga							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54284761	-	-	54284761	6	5	174	0	1	1	0	1	0	0	0	0	16295	261	9	0		0	TMEM48	1	54284761	Intron	DEL	A	TCGA-50-6597-01A-11D-1855-08	8201557	54284761	194965860	6	141845											
USP24	23358	broad.mit.edu	37	chr1	55604693	55604693	+	Intron	DEL	A	-	-													gtttagtagatctatagattAaaaaaaaaaagtattaaaat							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55604693	-	-	55604693	6	5	174	0	1	1	0	1	0	0	0	0	17181	377	13	0		0	USP24	1	55604693	Intron	DEL	A	TCGA-50-6597-01A-11D-1855-08	1319932	55604693	193645928	7	141846											
PDE4DIP	9659	broad.mit.edu	37	chr1	144874795	144874795	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtgctgctgggagagcGgtgggagtcagacaaggcat	19	6	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144874795	A	A	144874795	3	1	174	1	0	0	0	0	1	0	0	0	11737	1116	39	4	2287	4	PDE4DIP	1	144874795	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	89270102	144874795	104375826	8	141847											
NBPF10	100132406	broad.mit.edu	37	chr1	145415166	145415166	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggaaggcccttagttaggTtttaggaaggctggaaaccc	15	7	0	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145415166	A	A	145415166	1	1	174	0	1	0	0	0	0	0	0	0	10287	1740	60	5		5	NBPF10	1	145415166	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	540371	145415166	103835455	9	141848											
SPTA1	6708	broad.mit.edu	37	chr1	158631093	158631093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccttcctctaccattttGtttcccctttctgttatctc	2	14	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158631093	T	T	158631093	3	4	174	1	0	0	0	0	1	0	0	0	15234	1368	48	3	4828	3	SPTA1	1	158631093	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	13215927	158631093	90619528	10	141849											
CACNA1E	777	broad.mit.edu	37	chr1	181708389	181708389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggtggcctttgctctggCgtaagtgactcttttcatat	10	8	3	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181708389	A	A	181708389	3	1	174	1	0	0	0	0	1	0	0	0	2568	782	27	3	3817	3	CACNA1E	1	181708389	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	23077296	181708389	67542232	11	141850											
HMCN1	83872	broad.mit.edu	37	chr1	186057109	186057109	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagagctataaatgtagcaGgacgggatgataaaaatttc	11	4	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186057109	T	T	186057109	4	4	174	1	0	0	0	0	0	1	0	0	7287	1001	35	2	9651	2	HMCN1	1	186057109	Nonsense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	4348720	186057109	63193512	12	141851											
TPR	7175	broad.mit.edu	37	chr1	186324846	186324846	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggagtggaaacagtctgtGatgtacttggacgttttgga	14	5	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186324846	A	A	186324846	3	1	174	1	0	0	0	0	1	0	0	0	16540	1294	45	4	5292	4	TPR	1	186324846	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	267737	186324846	62925775	13	141852											
CR1L	1379	broad.mit.edu	37	chr1	207883643	207883643	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattgcagtgagccatgatcGtgccactgcactccagcctg	11	13	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207883643	A	A	207883643	1	1	174	0	1	0	0	0	0	0	0	0	3873	1160	40	4		4	CR1L	1	207883643	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	21558797	207883643	41366978	14	141853											
USH2A	7399	broad.mit.edu	37	chr1	215963477	215963477	+	Missense_Mutation	SNP	T	A	A													atccaactccattacagcatTtctggctctttggaataagt							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215963477	A	A	215963477	3	1	174	1	0	0	0	0	1	0	0	0	17162	1841	64	5	5590	5	USH2A	1	215963477	Missense_Mutation	SNP	T	TCGA-50-6597-01A-11D-1855-08	8079834	215963477	33287144	15	141854	610	2									
USH2A	7399	broad.mit.edu	37	chr1	215963479	215963479	+	Silent	SNP	C	T	T													ccaactccattacagcatttCtggctctttggaataagttc							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215963479	T	T	215963479	2	4	174	1	0	0	0	0	0	0	0	1	17162	912	32	4		4	USH2A	1	215963479	Silent	SNP	C	TCGA-50-6597-01A-11D-1855-08	2	215963479	33287142	16	141855	610	2									
OBSCN	84033	broad.mit.edu	37	chr1	228505469	228505469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgagttgcttcattgGggtctggggagttcacagcc	15	8	3	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228505469	T	T	228505469	1	4	174	0	1	0	0	0	0	0	0	0	10907	1247	43	2		2	OBSCN	1	228505469	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	12541990	228505469	20745152	17	141856											
TTC13	79573	broad.mit.edu	37	chr1	231064840	231064840	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaagatatcgagaatactCtgcagaaaggaaatgagatc	10	5	1	5			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231064840	T	T	231064840	5	4	174	1	0	0	0	0	0	0	1	0	16806	927	32	4	1330	4	TTC13	1	231064840	Splice_Site	SNP	C	TCGA-50-6597-01A-11D-1855-08	2559371	231064840	18185781	18	141857											
PCNXL2	80003	broad.mit.edu	37	chr1	233344195	233344195	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagtaaggaagcttagaaaTtcagaagacaaaggggagac	12	5	1	4			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233344195	A	A	233344195	1	1	174	0	1	0	0	0	0	0	0	0	11686	1508	52	5		5	PCNXL2	1	233344195	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	2279355	233344195	15906426	19	141858											
ADCY3	109	broad.mit.edu	37	chr2	25057771	25057771	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtcctgcaggcgcagcCtccggcgtgggttggggaat	17	12	0	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25057771	T	T	25057771	3	4	174	1	0	0	0	0	1	0	0	0	295	681	24	4	1789	4	ADCY3	2	25057771	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08		25057771	218141602	20	141859											
PREB	10113	broad.mit.edu	37	chr2	27356607	27356607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtgggagggggaaccCggatgagcaagttcaggggt	20	6	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27356607	A	A	27356607	1	1	174	0	1	0	0	0	0	0	0	0	12576	667	23	1		1	PREB	2	27356607	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	2298836	27356607	215842766	21	141860											
C2orf71	388939	broad.mit.edu	37	chr2	29296770	29296770	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttgtgatccatgggaacCctgtgtcttgaacggaatat	10	10	1	2	rs140625913	by1000genomes	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29296770	G	G	29296770	3	3	174	1	0	0	0	0	1	0	0	0	2213	623	22	4	3516	4	C2orf71	2	29296770	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	1940163	29296770	213902603	22	141861											
NLRC4	58484	broad.mit.edu	37	chr2	32463197	32463197	+	Intron	DEL	T	-	-													tcagttaatggaagcaacagTtacctaggattttcactgca							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32463197	-	-	32463197	6	5	174	0	1	1	0	1	0	0	0	0	10564	1740	60	0		0	NLRC4	2	32463197	Intron	DEL	T	TCGA-50-6597-01A-11D-1855-08	3166427	32463197	210736176	23	141862											
CEBPZ	10153	broad.mit.edu	37	chr2	37455407	37455407	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttccagtttgtcaaaaggaCgctggctgaaaatcctcagc	10	10	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37455407	G	G	37455407	3	3	174	1	0	0	0	0	1	0	0	0	3234	536	19	4	2295	4	CEBPZ	2	37455407	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	4992210	37455407	205743966	24	141863											
DUSP11	8446	broad.mit.edu	37	chr2	73994268	73994268	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaataaaagggaaaaataGtgtcaaccctcatacttaca	5	7	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73994268	A	A	73994268	1	1	174	0	1	0	0	0	0	0	0	0	4851	1044	36	4		4	DUSP11	2	73994268	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	36538861	73994268	169205105	25	141864											
PSD4	23550	broad.mit.edu	37	chr2	113942396	113942396	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcccctccttgggctgGcaccacctgaggcagggcca	12	17	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113942396	A	A	113942396	1	1	174	0	1	0	0	0	0	0	0	0	12755	1218	42	4		4	PSD4	2	113942396	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	39948128	113942396	129256977	26	141865											
DPP10	57628	broad.mit.edu	37	chr2	116539924	116539924	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatacacatatttttaaattCcaggtccaagggtcccagtg	7	9	0	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116539924	A	A	116539924	1	1	174	0	1	0	0	0	0	0	0	0	4767	870	30	3		3	DPP10	2	116539924	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	2597528	116539924	126659449	27	141866											
STEAP3	55240	broad.mit.edu	37	chr2	120005841	120005841	+	Intron	DEL	C	-	-													cacatgcttgtccagcacctCccccccccaccaaccaggtg							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120005841	-	-	120005841	6	5	174	0	1	1	0	1	0	0	0	0	15397	870	30	0		0	STEAP3	2	120005841	Intron	DEL	C	TCGA-50-6597-01A-11D-1855-08	3465917	120005841	123193532	28	141867											
NCKAP5	344148	broad.mit.edu	37	chr2	133539846	133539846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctggaagtctactcttcCgaaaaccaaaccagctggca	9	12	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133539846	A	A	133539846	3	1	174	1	0	0	0	0	1	0	0	0	10318	652	23	1	1219	1	NCKAP5	2	133539846	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	13534005	133539846	109659527	29	141868											
VIL1	7429	broad.mit.edu	37	chr2	219301247	219301247	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaccccccggctctttgaGtgttccaacaagactgggcg	10	14	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219301247	A	A	219301247	2	1	174	1	0	0	0	0	0	0	0	1	17291	1020	36	4		4	VIL1	2	219301247	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	85761401	219301247	23898126	30	141869											
WDR69	164781	broad.mit.edu	37	chr2	228762983	228762983	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttaccataccttcaggggtCatacagcagaaatagtgagt	10	8	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228762983	T	T	228762983	3	4	174	1	0	0	0	0	1	0	0	0	17446	826	29	4	548	4	WDR69	2	228762983	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	9461736	228762983	14436390	31	141870											
COL6A3	1293	broad.mit.edu	37	chr2	238280361	238280361	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccaaggagaacctccgaCgcccccatctcacctggagg	10	17	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238280361	T	T	238280361	1	4	174	0	1	0	0	0	0	0	0	0	3733	523	19	4		4	COL6A3	2	238280361	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	9517378	238280361	4919012	32	141871											
STAC	6769	broad.mit.edu	37	chr3	36484872	36484872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagctccagaaactaaaacGatcactttctttcaagacca	5	12	3	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36484872	A	A	36484872	3	1	174	1	0	0	0	0	1	0	0	0	15357	1058	37	4	134	4	STAC	3	36484872	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08		36484872	161537558	33	141872											
IL17RB	55540	broad.mit.edu	37	chr3	53892853	53892853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctggataacagtaagtgCccagtaacttcaaccagatg	8	11	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53892853	T	T	53892853	1	4	174	0	1	0	0	0	0	0	0	0	7710	754	26	4		4	IL17RB	3	53892853	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	17407981	53892853	144129577	34	141873											
CADPS	8618	broad.mit.edu	37	chr3	62477035	62477035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactggttcccatgactccCgctcaaagcccctgtgaatg	9	14	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62477035	A	A	62477035	3	1	174	1	0	0	0	0	1	0	0	0	2596	652	23	1	1096	1	CADPS	3	62477035	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	8584182	62477035	135545395	35	141874											
XRN1	54464	broad.mit.edu	37	chr3	142133085	142133085	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatggattttgagtgtactGatgttgtgtatatcagacag	11	3	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142133085	A	A	142133085	2	1	174	1	0	0	0	0	0	0	0	1	17586	1280	45	4		4	XRN1	3	142133085	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	79656050	142133085	55889345	36	141875											
ACOX3	8310	broad.mit.edu	37	chr4	8394092	8394092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtcctccacacgcctccCggcattcctgaattccttgc	7	18	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8394092	A	A	8394092	3	1	174	1	0	0	0	0	1	0	0	0	160	652	23	1	866	1	ACOX3	4	8394092	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08		8394092	182760184	37	141876											
TLR1	7096	broad.mit.edu	37	chr4	38798356	38798356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcactctggacaaagttGggagacaaaacaaagatgga	10	7	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38798356	T	T	38798356	2	4	174	1	0	0	0	0	0	0	0	1	16072	1335	47	2		2	TLR1	4	38798356	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	30404264	38798356	152355920	38	141877											
FAM190A	401145	broad.mit.edu	37	chr4	91701613	91701613	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accacataccctagggaattCtgaaaacctgactaacatca	5	12	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91701613	A	A	91701613	1	1	174	0	1	0	0	0	0	0	0	0	5568	912	32	3		3	FAM190A	4	91701613	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	52903257	91701613	99452663	39	141878											
NFKB1	4790	broad.mit.edu	37	chr4	103528248	103528248	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatttccttcagcttcacaAgggccatcttgtgagttagc	8	12	3	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103528248	G	G	103528248	1	3	174	0	1	0	0	0	0	0	0	0	10470	87	3	5		5	NFKB1	4	103528248	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	11826635	103528248	87626028	40	141879											
TRIML2	205860	broad.mit.edu	37	chr4	189012797	189012797	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacccagagagtccactcGgtccccatcaccgaccccgt	8	18	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189012797	A	A	189012797	2	1	174	1	0	0	0	0	0	0	0	1	16676	1103	39	4		4	TRIML2	4	189012797	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	85484549	189012797	2141479	41	141880											
NSUN2	54888	broad.mit.edu	37	chr5	6632745	6632745	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattcttaaagtggccgggAgcggctccctgagagcgtcc	13	11	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6632745	C	C	6632745	3	2	174	1	0	0	0	0	1	0	0	0	10773	304	11	5	2154	5	NSUN2	5	6632745	Missense_Mutation	SNP	A	TCGA-50-6597-01A-11D-1855-08		6632745	174282515	42	141881											
RXFP3	51289	broad.mit.edu	37	chr5	33937248	33937248	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcagtttgtgctcaccCtgcccttctgggcggtggag	12	12	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33937248	A	A	33937248	3	1	174	1	0	0	0	0	1	0	0	0	13872	680	24	2	405	2	RXFP3	5	33937248	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	27304503	33937248	146978012	43	141882											
SLC12A2	6558	broad.mit.edu	37	chr5	127520580	127520580	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttataaagattttcttgcTaatttatgataatatgcttt	4	4	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127520580	G	G	127520580	1	3	174	0	1	0	0	0	0	0	0	0	14496	1537	53	5		5	SLC12A2	5	127520580	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	93583332	127520580	53394680	44	141883											
CLINT1	9685	broad.mit.edu	37	chr5	157218693	157218693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataaataacaaattccaaGggaaccagacaacttacctg	5	9	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157218693	T	T	157218693	1	4	174	0	1	0	0	0	0	0	0	0	3563	1015	35	2		2	CLINT1	5	157218693	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	29698113	157218693	23696567	45	141884											
RANBP17	64901	broad.mit.edu	37	chr5	170610377	170610377	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatcatagtctcagcgacTtcaggtgtcgaacaaccttc	7	12	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170610377	G	G	170610377	3	3	174	1	0	0	0	0	1	0	0	0	13135	1609	56	5	2051	5	RANBP17	5	170610377	Missense_Mutation	SNP	T	TCGA-50-6597-01A-11D-1855-08	13391684	170610377	10304883	46	141885											
RANBP17	64901	broad.mit.edu	37	chr5	170610449	170610449	+	Intron	SNP	T	C	C													atctgggtaaggttaagaatTtaaactcaattaataaggga							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170610449	C	C	170610449	1	2	174	0	1	0	0	0	0	0	0	0	13135	1856	64	5		5	RANBP17	5	170610449	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	72	170610449	10304811	47	141886	611	2									
RANBP17	64901	broad.mit.edu	37	chr5	170610455	170610455	+	Intron	SNP	T	A	A													gtaaggttaagaatttaaacTcaattaataagggatcagca							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170610455	A	A	170610455	1	1	174	0	1	0	0	0	0	0	0	0	13135	1566	54	5		5	RANBP17	5	170610455	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	6	170610455	10304805	48	141887	611	2									
CPEB4	80315	broad.mit.edu	37	chr5	173337418	173337418	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatgtgccttacatagagAgtaaaattgctactttgtga	8	5	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173337418	C	C	173337418	1	2	174	0	1	0	0	0	0	0	0	0	3835	319	11	5		5	CPEB4	5	173337418	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	2726963	173337418	7577842	49	141888											
SLC34A1	6569	broad.mit.edu	37	chr5	176820662	176820662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacctcaggctgtgttttcCtaattcactaagtcaccctc	5	14	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176820662	A	A	176820662	1	1	174	0	1	0	0	0	0	0	0	0	14681	696	24	2		2	SLC34A1	5	176820662	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	3483244	176820662	4094598	50	141889											
NQO2	4835	broad.mit.edu	37	chr6	3019752	3019752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatttaaagtccttgccCctcagatcagctttgctcct	8	12	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3019752	A	A	3019752	3	1	174	1	0	0	0	0	1	0	0	0	10707	623	22	2	581	2	NQO2	6	3019752	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08		3019752	168095315	51	141890											
TDP2	51567	broad.mit.edu	37	chr6	24651254	24651254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtttgcccaaaaactccCagacatccacaatgttgttg	7	11	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24651254	A	A	24651254	3	1	174	1	0	0	0	0	1	0	0	0	15851	595	21	2	241	2	TDP2	6	24651254	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	21631502	24651254	146463813	52	141891											
BTN2A1	11120	broad.mit.edu	37	chr6	26466290	26466290	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctctgtctgtcccttgcagGatggagaagaacattcttac	9	10	3	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26466290	A	A	26466290	3	1	174	1	0	0	0	0	1	0	0	0	1570	1188	41	4	978	4	BTN2A1	6	26466290	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	1815036	26466290	144648777	53	141892											
HLA-A	3105	broad.mit.edu	37	chr6	29911194	29911194	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcggcggacatggcggctCagatcaccaagcgcaagtgg	15	13	2	1	rs41541518		TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29911194	T	T	29911194	4	4	174	1	0	0	0	0	0	1	0	0	7262	827	29	4	503	4	HLA-A	6	29911194	Nonsense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	3444904	29911194	141203873	54	141893											
GNL1	2794	broad.mit.edu	37	chr6	30522868	30522868	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacctcccggatgtccagctCcaacaactcagcactgaccg	7	18	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30522868	G	G	30522868	3	3	174	1	0	0	0	0	1	0	0	0	6599	864	30	4	1523	4	GNL1	6	30522868	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	611674	30522868	140592199	55	141894											
GNL1	2794	broad.mit.edu	37	chr6	30522939	30522939	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctctctacctcctccCtgctgtctctctcaaaatgc	3	18	4	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30522939	T	T	30522939	3	4	174	1	0	0	0	0	1	0	0	0	6599	681	24	4	1594	4	GNL1	6	30522939	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	71	30522939	140592128	56	141895											
DNAH8	1769	broad.mit.edu	37	chr6	38840727	38840727	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctgtggatgccatctGgattgagaacttaaattccg	11	8	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38840727	A	A	38840727	4	1	174	1	0	0	0	0	0	1	0	0	4647	1357	47	4	6818	4	DNAH8	6	38840727	Nonsense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	8317788	38840727	132274340	57	141896											
PKHD1	5314	broad.mit.edu	37	chr6	51938411	51938411	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tataataaaaaaccatgtttCtttttggttgtatatactca	4	5	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51938411	A	A	51938411	1	1	174	0	1	0	0	0	0	0	0	0	12066	928	32	3		3	PKHD1	6	51938411	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	13097684	51938411	119176656	58	141897											
WASF1	8936	broad.mit.edu	37	chr6	110424684	110424684	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctttcctcagctctagtcaGaagctcactcatctgactaa	5	14	6	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110424684	C	C	110424684	3	2	174	1	0	0	0	0	1	0	0	0	17379	933	33	4	901	4	WASF1	6	110424684	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	58486273	110424684	60690383	59	141898											
REV3L	5980	broad.mit.edu	37	chr6	111632428	111632428	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattagacttatatctctcGtttcaaatagcagctttaga	5	7	2	2	rs142379750		TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111632428	A	A	111632428	3	1	174	1	0	0	0	0	1	0	0	0	13348	1145	40	4	769	4	REV3L	6	111632428	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	1207744	111632428	59482639	60	141899											
RSPH10B2	728194	broad.mit.edu	37	chr7	6803562	6803562	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggccgttctgcttcagggcGactttgtgaagaatgtcccg	13	10	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6803562	A	A	6803562	3	1	174	1	0	0	0	0	1	0	0	0	13815	1058	37	4	3106	4	RSPH10B2	7	6803562	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08		6803562	152335101	61	141900											
ANKMY2	57037	broad.mit.edu	37	chr7	16640525	16640525	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatacctacttcagcctctGgttgctcttcattaacacag	6	12	4	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16640525	A	A	16640525	3	1	174	1	0	0	0	0	1	0	0	0	635	1348	47	4	142	4	ANKMY2	7	16640525	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	9836963	16640525	142498138	62	141901											
TRIL	9865	broad.mit.edu	37	chr7	28996325	28996325	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcggcggcagctcctccgcGagacctgcaggtggcgtcat	15	14	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28996325	A	A	28996325	2	1	174	1	0	0	0	0	0	0	0	1	16609	1045	37	4		4	TRIL	7	28996325	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	12355800	28996325	130142338	63	141902											
FAM188B	84182	broad.mit.edu	37	chr7	30915313	30915314	+	Intron	DEL	CT	-	-													ccacaagtaggggagcctgaCtctctggagcaatgaggagg							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30915314	-	-	30915313	6	5	174	0	1	1	0	1	0	0	0	0	5561	580	20	0		0	FAM188B	7	30915313	Intron	DEL	CT	TCGA-50-6597-01A-11D-1855-08	1918988	30915313	128223350	64	141903											
RELN	5649	broad.mit.edu	37	chr7	103138396	103138396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgcaagcacattttatcCatcagaataattcattagaa	5	7	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103138396	A	A	103138396	1	1	174	0	1	0	0	0	0	0	0	0	13328	609	21	2		2	RELN	7	103138396	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	72223083	103138396	56000267	65	141904											
MET	4233	broad.mit.edu	37	chr7	116412042	116412045	+	Splice_Site	DEL	AGGT	-	-													taccgagctacttttccagaAggtatatttcagtttattgt							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116412045	-	-	116412042	8	5	174	1	0	1	0	1	0	0	1	0	9578	86	3	0	3131	0	MET	7	116412042	Splice_Site	DEL	AGGT	TCGA-50-6597-01A-11D-1855-08	13273646	116412042	42726621	66	141905											
WNT16	51384	broad.mit.edu	37	chr7	120969620	120969620	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgggcggccgtgtcttacaGgtggttgggcattgcctcct	15	11	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120969620	A	A	120969620	5	1	174	1	0	0	0	0	0	0	1	0	17512	1014	35	4	170	4	WNT16	7	120969620	Splice_Site	SNP	G	TCGA-50-6597-01A-11D-1855-08	4557578	120969620	38169043	67	141906											
SPAM1	6677	broad.mit.edu	37	chr7	123595113	123595113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctggaattgtaatatgGggaaccctcagtataatgcg	11	7	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123595113	T	T	123595113	3	4	174	1	0	0	0	0	1	0	0	0	15102	1241	43	2	1023	2	SPAM1	7	123595113	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	2625493	123595113	35543550	68	141907											
PAX4	5078	broad.mit.edu	37	chr7	127251541	127251541	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcctggaggttgagtcagtCgaccctccctacatcctgca	9	15	1	1	rs111652274	by1000genomes	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127251541	G	G	127251541	1	3	174	0	1	0	0	0	0	0	0	0	11575	899	31	4		4	PAX4	7	127251541	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	3656428	127251541	31887122	69	141908											
KEL	3792	broad.mit.edu	37	chr7	142640391	142640391	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaagatgtgcaacagctcGtgggccatgatgctgccagc	13	10	0	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142640391	A	A	142640391	2	1	174	1	0	0	0	0	0	0	0	1	8212	1136	40	4		4	KEL	7	142640391	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	15388850	142640391	16498272	70	141909											
CLCN1	1180	broad.mit.edu	37	chr7	143028371	143028371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttccgaatggatttcccCtttgacctgaaggaactacc	7	11	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143028371	A	A	143028371	2	1	174	1	0	0	0	0	0	0	0	1	3493	668	24	2		2	CLCN1	7	143028371	Silent	SNP	C	TCGA-50-6597-01A-11D-1855-08	387980	143028371	16110292	71	141910											
LGI3	203190	broad.mit.edu	37	chr8	22013937	22013937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcaagagcagctgggcGggcaggggggcgtcttgggg	23	7	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22013937	T	T	22013937	3	4	174	1	0	0	0	0	1	0	0	0	8825	1116	39	1	1559	1	LGI3	8	22013937	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08		22013937	124350085	72	141911											
PRDM14	63978	broad.mit.edu	37	chr8	70964594	70964594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacttccacgagctggaCaaccaattaaactaaggggt	9	10	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70964594	A	A	70964594	1	1	174	0	1	0	0	0	0	0	0	0	12561	493	17	3		3	PRDM14	8	70964594	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	48950657	70964594	75399428	73	141912											
C8orf37	157657	broad.mit.edu	37	chr8	96281433	96281433	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcttgaatcgcctggcCttttcccctccaatcgccaa	6	17	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96281433	A	A	96281433	1	1	174	1	0	0	0	0	0	0	0	0	2449	696	24	2		2	C8orf37	8	96281433	Translation_Start_Site	SNP	C	TCGA-50-6597-01A-11D-1855-08	25316839	96281433	50082589	74	141913											
MATN2	4147	broad.mit.edu	37	chr8	99006571	99006571	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggaagtagctttattgGgagaccccttcatggtgtga	12	7	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99006571	T	T	99006571	1	4	174	0	1	0	0	0	0	0	0	0	9426	1247	43	2		2	MATN2	8	99006571	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	2725138	99006571	47357451	75	141914											
CSMD3	114788	broad.mit.edu	37	chr8	113933800	113933800	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattgcaacttaattacaatGaaataaaggttaaactatta	4	4	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113933800	T	T	113933800	1	4	174	0	1	0	0	0	0	0	0	0	3980	1305	45	3		3	CSMD3	8	113933800	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	14927229	113933800	32430222	76	141915											
ARHGAP39	80728	broad.mit.edu	37	chr8	145773476	145773476	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgccagcctcgaattgcaCgtccatggggggctcatcgt	12	15	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145773476	T	T	145773476	3	4	174	1	0	0	0	0	1	0	0	0	886	536	19	4	2382	4	ARHGAP39	8	145773476	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	31839676	145773476	590546	77	141916											
RASEF	158158	broad.mit.edu	37	chr9	85597694	85597694	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcagttctctttttcacTtctctgagacagagatagag	8	8	4	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85597694	C	C	85597694	2	2	174	1	0	0	0	0	0	0	0	1	13176	1606	56	5		5	RASEF	9	85597694	Silent	SNP	T	TCGA-50-6597-01A-11D-1855-08		85597694	55615737	78	141917											
C9orf6	54942	broad.mit.edu	37	chr9	111701755	111701757	+	Intron	DEL	ATG	-	-													gtaaaagagagagaaaaaatAtgatctcatccacatacctt							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111701757	-	-	111701755	6	5	174	0	1	1	0	1	0	0	0	0	2514	464	16	0		0	C9orf6	9	111701755	Intron	DEL	ATG	TCGA-50-6597-01A-11D-1855-08	26104061	111701755	29511676	79	141918											
C9orf5	23731	broad.mit.edu	37	chr9	111795868	111795868	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgcattctttaatacaCtatgctttttagcatattat	4	6	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111795868	T	T	111795868	1	4	174	0	1	0	0	0	0	0	0	0	2512	580	20	4		4	C9orf5	9	111795868	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	94113	111795868	29417563	80	141919											
ZNF483	158399	broad.mit.edu	37	chr9	114293154	114293154	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggttttctcccctttcctaGatccagtctctcaagattct	5	13	4	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114293154	A	A	114293154	5	1	174	1	0	0	0	0	0	0	1	0	18063	956	33	4	418	4	ZNF483	9	114293154	Splice_Site	SNP	G	TCGA-50-6597-01A-11D-1855-08	2497286	114293154	26920277	81	141920											
SLC46A2	57864	broad.mit.edu	37	chr9	115651960	115651960	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaccaggacacccaggaaGctggtgatgaagatggtgta	14	7	0	4			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115651960	A	A	115651960	2	1	174	1	0	0	0	0	0	0	0	1	14759	962	34	4		4	SLC46A2	9	115651960	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	1358806	115651960	25561471	82	141921											
COL27A1	85301	broad.mit.edu	37	chr9	117002471	117002471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccttcacagcccccgtGggtgaccctgctctctgctt	8	18	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117002471	T	T	117002471	1	4	174	0	1	0	0	0	0	0	0	0	3717	1363	47	2		2	COL27A1	9	117002471	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	1350511	117002471	24210960	83	141922											
AKNA	80709	broad.mit.edu	37	chr9	117119128	117119128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgacgggacaatggcGggatcccgggatacctgatg	16	10	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117119128	T	T	117119128	1	4	174	0	1	0	0	0	0	0	0	0	463	1131	39	1		1	AKNA	9	117119128	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	116657	117119128	24094303	84	141923											
DHTKD1	55526	broad.mit.edu	37	chr10	12159613	12159613	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgatagcggcccttgtaAgtgacagcatcacctctttc	9	11	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12159613	C	C	12159613	1	2	174	0	1	0	0	0	0	0	0	0	4540	87	3	5		5	DHTKD1	10	12159613	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08		12159613	123375134	85	141924											
ARHGAP21	57584	broad.mit.edu	37	chr10	24909535	24909535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaaagtagtgcggttgGggacgacctggttataatct	13	8	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24909535	T	T	24909535	3	4	174	1	0	0	0	0	1	0	0	0	873	1232	43	2	4659	2	ARHGAP21	10	24909535	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	12749922	24909535	110625212	86	141925											
HNRNPH3	3189	broad.mit.edu	37	chr10	70097841	70097842	+	Intron	INS	-	T	T													atgggggggtagccataacaINStttttctggggtagtttaaa							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70097842	T	T	70097841	6	5	174	0	1	1	1	0	0	0	0	0	7335	232	8	0		0	HNRNPH3	10	70097841	Intron	INS	-	TCGA-50-6597-01A-11D-1855-08	45188306	70097841	65436906	87	141926											
GRID1	2894	broad.mit.edu	37	chr10	87407070	87407070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccagggggttggtgccCttggctcggaagtactcata	14	10	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87407070	A	A	87407070	3	1	174	1	0	0	0	0	1	0	0	0	6837	680	24	2	963	2	GRID1	10	87407070	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	17309229	87407070	48127677	88	141927											
MYOF	26509	broad.mit.edu	37	chr10	95211783	95211783	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatagtaatacctaaaatgaGaaaaacaggtgaaaacaact	7	5	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95211783	C	C	95211783	1	2	174	0	1	0	0	0	0	0	0	0	10183	957	33	4		4	MYOF	10	95211783	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	7804713	95211783	40322964	89	141928											
IFITM2	10581	broad.mit.edu	37	chr11	308104	308104	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcatttgacaaatgccagGaagaggaaactgttgagaaa	11	6	0	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	308104	A	A	308104	1	1	174	0	1	0	0	0	0	0	0	0	7597	1189	41	4		4	IFITM2	11	308104	5'Flank	SNP	G	TCGA-50-6597-01A-11D-1855-08		308104	134698412	90	141929											
OR51A7	119687	broad.mit.edu	37	chr11	4929375	4929375	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccatcatcaccctggctgCcatgcatcactttgccaagc	7	17	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4929375	G	G	4929375	3	3	174	1	0	0	0	0	1	0	0	0	11182	739	26	4	778	4	OR51A7	11	4929375	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	4621271	4929375	130077141	91	141930											
FXC1	26515	broad.mit.edu	37	chr11	6503506	6503506	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccctcagattgaaggaccCggtggaccttggggttggtg	16	9	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6503506	T	T	6503506	1	4	174	0	1	0	0	0	0	0	0	0	6173	667	23	4		4	FXC1	11	6503506	3'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08	1574131	6503506	128503010	92	141931											
DNAJC24	120526	broad.mit.edu	37	chr11	31454180	31454180	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatagtatcatcatattccCttttgctatctgtccctttt	3	10	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31454180	G	G	31454180	1	3	174	0	1	0	0	0	0	0	0	0	4682	696	24	4		4	DNAJC24	11	31454180	3'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08	24950674	31454180	103552336	93	141932											
PDHX	8050	broad.mit.edu	37	chr11	34938159	34938159	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggcggggccttgatgctgGacatcaggctgtgctgcggg	19	9	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34938159	T	T	34938159	1	4	174	0	1	0	0	0	0	0	0	0	11761	1189	41	3		3	PDHX	11	34938159	5'UTR	SNP	G	TCGA-50-6597-01A-11D-1855-08	3483979	34938159	100068357	94	141933											
CRY2	1408	broad.mit.edu	37	chr11	45891169	45891169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccgcatggaggggaaccCcatctgcatccagatcccct	10	15	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45891169	A	A	45891169	3	1	174	1	0	0	0	0	1	0	0	0	3936	623	22	2	1120	2	CRY2	11	45891169	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	10953010	45891169	89115347	95	141934											
ACP2	53	broad.mit.edu	37	chr11	47261720	47261720	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagccaggaggctgggcctGcatccggaagaggacggtga	18	9	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47261720	A	A	47261720	4	1	174	1	0	0	0	0	0	1	0	0	163	1328	46	4	56	4	ACP2	11	47261720	Nonsense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	1370551	47261720	87744796	96	141935											
SF1	7536	broad.mit.edu	37	chr11	64533557	64533557	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggctcctggagaagctgcGgcagccgcctgctgctgttg	17	12	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64533557	C	C	64533557	2	2	174	1	0	0	0	0	0	0	0	1	14258	1103	39	4		4	SF1	11	64533557	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	17271837	64533557	70472959	97	141936											
FRMD8	83786	broad.mit.edu	37	chr11	65156898	65156898	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctgtggagaacctgccctCgctcagtgcccatgagctgc	13	14	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65156898	A	A	65156898	4	1	174	1	0	0	0	0	0	1	0	0	6116	893	31	3	158	3	FRMD8	11	65156898	Nonsense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	623341	65156898	69849618	98	141937											
PPFIA1	8500	broad.mit.edu	37	chr11	70172763	70172763	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaaagtaattgagctccaaGaaatcataagtaagcagtca	7	7	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70172763	A	A	70172763	3	1	174	1	0	0	0	0	1	0	0	0	12405	943	33	4	791	4	PPFIA1	11	70172763	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	5015865	70172763	64833753	99	141938											
INTS4	92105	broad.mit.edu	37	chr11	77649800	77649800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgggagcatcatctccCcactttctgccactggaaaa	7	14	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77649800	A	A	77649800	3	1	174	1	0	0	0	0	1	0	0	0	7850	624	22	2	1885	2	INTS4	11	77649800	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	7477037	77649800	57356716	100	141939											
C11orf88	399949	broad.mit.edu	37	chr11	111405300	111405300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcttctagaaacccaccCgtgtattacagatttcttgc	5	11	3	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111405300	A	A	111405300	1	1	174	0	1	0	0	0	0	0	0	0	1682	667	23	1		1	C11orf88	11	111405300	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	33755500	111405300	23601216	101	141940											
C11orf1	64776	broad.mit.edu	37	chr11	111753869	111753869	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctttccagtttggacacTactttgaaacaacatatgat	5	8	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111753869	G	G	111753869	3	3	174	1	0	0	0	0	1	0	0	0	1640	1522	53	5	296	5	C11orf1	11	111753869	Missense_Mutation	SNP	T	TCGA-50-6597-01A-11D-1855-08	348569	111753869	23252647	102	141941											
FAM55A	120400	broad.mit.edu	37	chr11	114393191	114393191	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagcaaatgtttcttaaaGattccagtttcatgaagatc	7	6	2	4			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114393191	C	C	114393191	3	2	174	1	0	0	0	0	1	0	0	0	5635	932	33	4	504	4	FAM55A	11	114393191	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	2639322	114393191	20613325	103	141942											
FAM90A1	55138	broad.mit.edu	37	chr12	8376143	8376143	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagagccttcctctgcgGgtcttgtggcctgcagaaca	14	11	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8376143	A	A	8376143	3	1	174	1	0	0	0	0	1	0	0	0	5703	1232	43	4	1068	4	FAM90A1	12	8376143	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08		8376143	125475752	104	141943											
SLC39A5	283375	broad.mit.edu	37	chr12	56628834	56628834	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggggcccatgccaaaaagGaggctcactggggtcctgcc	15	12	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56628834	A	A	56628834	1	1	174	0	1	0	0	0	0	0	0	0	14735	1189	41	4		4	SLC39A5	12	56628834	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	48252691	56628834	77223061	105	141944											
ANKRD52	283373	broad.mit.edu	37	chr12	56647786	56647786	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccaagagagctatccagaTacagtcaggacccctagatc	8	14	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56647786	C	C	56647786	1	2	174	0	1	0	0	0	0	0	0	0	678	1421	49	5		5	ANKRD52	12	56647786	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	18952	56647786	77204109	106	141945											
LRP1	4035	broad.mit.edu	37	chr12	57539234	57539234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggcctaaagggcttcGtggatgagcacaccatcaac	11	12	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57539234	A	A	57539234	3	1	174	1	0	0	0	0	1	0	0	0	9038	1145	40	4	824	4	LRP1	12	57539234	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	891448	57539234	76312661	107	141946											
KIF5A	3798	broad.mit.edu	37	chr12	57969810	57969810	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggagttctggtcacaacGtgaagttctttccgaaagag	11	9	3	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57969810	A	A	57969810	1	1	174	0	1	0	0	0	0	0	0	0	8375	1160	40	4		4	KIF5A	12	57969810	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	430576	57969810	75882085	108	141947											
LRIG3	121227	broad.mit.edu	37	chr12	59284031	59284031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttaaccatcaatggaaaCttaaaataattactttttag	3	6	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59284031	A	A	59284031	1	1	174	0	1	0	0	0	0	0	0	0	9033	580	20	3		3	LRIG3	12	59284031	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	1314221	59284031	74567864	109	141948											
DPY19L2	283417	broad.mit.edu	37	chr12	63963073	63963073	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaactccaacaatttatctCttacttctttggcagatttt	4	9	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63963073	A	A	63963073	3	1	174	1	0	0	0	0	1	0	0	0	4781	913	32	3	227	3	DPY19L2	12	63963073	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	4679042	63963073	69888822	110	141949											
CPM	1368	broad.mit.edu	37	chr12	69260803	69260803	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttcaaaacactgggcccaGatgtagttgtaatcttgcat	8	8	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69260803	C	C	69260803	3	2	174	1	0	0	0	0	1	0	0	0	3840	932	33	4	530	4	CPM	12	69260803	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	5297730	69260803	64591092	111	141950											
CPM	1368	broad.mit.edu	37	chr12	69265510	69265510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggccaacaggtgcctgtcGggagcctttgtgttgtgttg	15	8	0	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69265510	T	T	69265510	1	4	174	0	1	0	0	0	0	0	0	0	3840	1131	39	1		1	CPM	12	69265510	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	4707	69265510	64586385	112	141951											
CPM	1368	broad.mit.edu	37	chr12	69265726	69265726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatggagcagcagctccCgcccaacagtctatatgtgt	10	12	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69265726	A	A	69265726	3	1	174	1	0	0	0	0	1	0	0	0	3840	652	23	1	1086	1	CPM	12	69265726	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	216	69265726	64586169	113	141952											
CPM	1368	broad.mit.edu	37	chr12	69326435	69326435	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggactgagggtttggcaaAgtgttcacgagacggaccct	15	8	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69326435	G	G	69326435	1	3	174	0	1	0	0	0	0	0	0	0	3840	87	3	5		5	CPM	12	69326435	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	60709	69326435	64525460	114	141953											
CPM	1368	broad.mit.edu	37	chr12	69326650	69326650	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataaaaataagaagaacctGagaacacatgagggcaggcg	11	6	0	4			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69326650	C	C	69326650	1	2	174	0	1	0	0	0	0	0	0	0	3840	1305	45	4		4	CPM	12	69326650	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	215	69326650	64525245	115	141954											
YEATS4	8089	broad.mit.edu	37	chr12	69756739	69756739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaagttgtctgtaatttGttttgcttaaagacaacctg	7	6	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69756739	T	T	69756739	1	4	174	0	1	0	0	0	0	0	0	0	17600	1392	48	3		3	YEATS4	12	69756739	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	430089	69756739	64095156	116	141955											
ATP2A2	488	broad.mit.edu	37	chr12	110783813	110783813	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttgctctgcagcttgtccGaaaaccagtccttgctgagg	10	13	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110783813	A	A	110783813	3	1	174	1	0	0	0	0	1	0	0	0	1141	1059	37	4	2823	4	ATP2A2	12	110783813	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	41027074	110783813	23068082	117	141956											
SMAD9	4093	broad.mit.edu	37	chr13	37427571	37427571	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttaccttaacaaaactcatCcggatagtacacatcttggt	5	11	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37427571	T	T	37427571	2	4	174	1	0	0	0	0	0	0	0	1	14878	842	30	4		4	SMAD9	13	37427571	Silent	SNP	C	TCGA-50-6597-01A-11D-1855-08		37427571	77742307	118	141957											
CMTM5	116173	broad.mit.edu	37	chr14	23846421	23846421	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtttctcttgctgggCttttggcagtagggggctgt	14	7	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23846421	A	A	23846421	1	1	174	0	1	0	0	0	0	0	0	0	3618	812	28	3		3	CMTM5	14	23846421	5'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08		23846421	83503119	119	141958											
WDHD1	11169	broad.mit.edu	37	chr14	55475291	55475291	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatttttaaacatattcaGgaaaaacacaaaaagagaag	5	4	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55475291	A	A	55475291	1	1	174	0	1	0	0	0	0	0	0	0	17398	1015	35	4		4	WDHD1	14	55475291	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	31628870	55475291	51874249	120	141959											
COQ6	51004	broad.mit.edu	37	chr14	74428548	74428548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattctaccagtgcctcccCgcttgtgttgctcaggacgt	9	14	2	0	rs148444170	by1000genomes	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74428548	A	A	74428548	3	1	174	1	0	0	0	0	1	0	0	0	3781	652	23	1	1361	1	COQ6	14	74428548	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	18953257	74428548	32920992	121	141960											
C14orf166B	145497	broad.mit.edu	37	chr14	77327095	77327095	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtatgccgttcacccGcagctggacgtggtattcaa	13	10	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77327095	A	A	77327095	2	1	174	1	0	0	0	0	0	0	0	1	1770	1074	38	4		4	C14orf166B	14	77327095	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	2898547	77327095	30022445	122	141961											
DICER1	23405	broad.mit.edu	37	chr14	95556943	95556943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacacctttaaatttcccCtttcctactacttccacagt	1	16	0	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95556943	A	A	95556943	3	1	174	1	0	0	0	0	1	0	0	0	4561	680	24	2	111	2	DICER1	14	95556943	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	18229848	95556943	11792597	123	141962											
ANKS3	124401	broad.mit.edu	37	chr16	4751201	4751201	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagccttggtgaaacccccAcccgccacacaggggcttga	11	15	0	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4751201	C	C	4751201	1	2	174	0	1	0	0	0	0	0	0	0	690	174	6	5		5	ANKS3	16	4751201	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08		4751201	85603552	124	141963											
PDXDC1	23042	broad.mit.edu	37	chr16	15102638	15102638	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atatgtttcttcctgcagctCggcttgcccttcccctgctt	7	15	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15102638	T	T	15102638	2	4	174	1	0	0	0	0	0	0	0	1	11790	871	31	4		4	PDXDC1	16	15102638	Silent	SNP	C	TCGA-50-6597-01A-11D-1855-08	10351437	15102638	75252115	125	141964											
PDXDC1	23042	broad.mit.edu	37	chr16	15141606	15141606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccagaaaaaaggtaagcGgagtccgcttccaacaagac	10	10	0	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15141606	T	T	15141606	1	4	174	0	1	0	0	0	0	0	0	0	11790	1131	39	1		1	PDXDC1	16	15141606	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	38968	15141606	75213147	126	141965											
KIAA0556	23247	broad.mit.edu	37	chr16	27781388	27781388	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcccggcccctgggccCgcttgctttgcaagttgctc	10	19	0	0	rs80151013	byFrequency;by1000genomes	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27781388	A	A	27781388	1	1	174	0	1	0	0	0	0	0	0	0	8253	667	23	1		1	KIAA0556	16	27781388	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	12639782	27781388	62573365	127	141966											
MYLK3	91807	broad.mit.edu	37	chr16	46754929	46754929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacacaagagctttcttgcaTcagttccaaaactcaagcat	5	12	3	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46754929	A	A	46754929	1	1	174	0	1	0	0	0	0	0	0	0	10152	1450	50	5		5	MYLK3	16	46754929	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	18973541	46754929	43599824	128	141967											
CDH3	1001	broad.mit.edu	37	chr16	68720499	68720499	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggagataaagttcttctTccagaatatggaggcaccaa	10	7	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68720499	C	C	68720499	1	2	174	0	1	0	0	0	0	0	0	0	3141	1798	62	5		5	CDH3	16	68720499	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	21965570	68720499	21634254	129	141968											
PKD1L2	114780	broad.mit.edu	37	chr16	81214698	81214698	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaccgggcatgcgacacGggtgtgctgaaagcgcaagg	16	10	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81214698	T	T	81214698	1	4	174	0	1	0	0	0	0	0	0	0	12060	1131	39	1		1	PKD1L2	16	81214698	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	12494199	81214698	9140055	130	141969											
PRDM7	11105	broad.mit.edu	37	chr16	90128579	90128579	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacagctgtcaatgaagAagttctgacacatctcacaa	7	11	3	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90128579	G	G	90128579	3	3	174	1	0	0	0	0	1	0	0	0	12567	246	9	5	862	5	PRDM7	16	90128579	Missense_Mutation	SNP	A	TCGA-50-6597-01A-11D-1855-08	8913881	90128579	226174	131	141970											
NLGN2	57555	broad.mit.edu	37	chr17	7311965	7311965	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgacaacttggaggcggccGccacctacgtgcagaaccag	12	15	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7311965	A	A	7311965	3	1	174	1	0	0	0	0	1	0	0	0	10557	1087	38	4	393	4	NLGN2	17	7311965	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08		7311965	73883245	132	141971											
DNAH9	1770	broad.mit.edu	37	chr17	11790293	11790293	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctcaaggtgacttacaCctggagtttcttgcctgatt	8	10	3	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11790293	T	T	11790293	1	4	174	0	1	0	0	0	0	0	0	0	4648	522	18	4		4	DNAH9	17	11790293	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	4478328	11790293	69404917	133	141972											
PMP22	5376	broad.mit.edu	37	chr17	15142888	15142888	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagacagaatgctgaagatGatcgacaggatcatggtggc	14	6	1	5			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15142888	A	A	15142888	2	1	174	1	0	0	0	0	0	0	0	1	12234	1280	45	4		4	PMP22	17	15142888	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	3352595	15142888	66052322	134	141973											
MYO18A	399687	broad.mit.edu	37	chr17	27447788	27447788	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttctccactgcagaatacAggcccaaggggatatcagga	10	11	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27447788	T	T	27447788	1	4	174	0	1	0	0	0	0	0	0	0	10159	203	7	5		5	MYO18A	17	27447788	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	12304900	27447788	53747422	135	141974											
SSH2	85464	broad.mit.edu	37	chr17	28120973	28120974	+	Intron	INS	-	A	A													tcctgtatagacagaaaatgINSaaaaaaaaaattaaaacctg							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28120974	A	A	28120973	6	5	174	0	1	1	1	0	0	0	0	0	15303	1305	45	0		0	SSH2	17	28120973	Intron	INS	-	TCGA-50-6597-01A-11D-1855-08	673185	28120973	53074237	136	141975											
JUP	3728	broad.mit.edu	37	chr17	39778034	39778034	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggggatgtggatgtgcGcatctggacccatcctgacc	13	10	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39778034	A	A	39778034	1	1	174	0	1	0	0	0	0	0	0	0	8042	1102	38	4		4	JUP	17	39778034	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	11657061	39778034	41417176	137	141976											
CLTC	1213	broad.mit.edu	37	chr17	57762973	57762973	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgcagtatgcttctgaatCtaaagatactgaattggctg	9	6	2	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57762973	G	G	57762973	3	3	174	1	0	0	0	0	1	0	0	0	3598	913	32	4	4749	4	CLTC	17	57762973	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	17984939	57762973	23432237	138	141977											
BRIP1	83990	broad.mit.edu	37	chr17	59857699	59857699	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgacgaaaaggatttcaTtggtgataatgtaccagatg	10	5	2	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59857699	C	C	59857699	3	2	174	1	0	0	0	0	1	0	0	0	1523	1493	52	5	1923	5	BRIP1	17	59857699	Missense_Mutation	SNP	T	TCGA-50-6597-01A-11D-1855-08	2094726	59857699	21337511	139	141978											
CCDC47	57003	broad.mit.edu	37	chr17	61842264	61842264	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtcaccagcagctgtgtcTcattttgttggcaacatttg	9	9	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61842264	A	A	61842264	1	1	174	0	1	0	0	0	0	0	0	0	2846	1566	54	5		5	CCDC47	17	61842264	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	1984565	61842264	19352946	140	141979											
SLC25A10	1468	broad.mit.edu	37	chr17	79682633	79682633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtcagcggtgagctgccGggcgggagggggaggggcgc	23	10	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79682633	T	T	79682633	1	4	174	0	1	0	0	0	0	0	0	0	14586	1131	39	1		1	SLC25A10	17	79682633	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	17840369	79682633	1512577	141	141980											
P4HB	5034	broad.mit.edu	37	chr17	79804956	79804956	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcggggctgtctgtgttAtaaacttaagttactgggtc	11	7	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79804956	G	G	79804956	1	3	174	0	1	0	0	0	0	0	0	0	11453	464	16	5		5	P4HB	17	79804956	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	122323	79804956	1390254	142	141981											
RNMT	8731	broad.mit.edu	37	chr18	13760037	13760037	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcacaaatttgaacaactCatctcgatatatttgatatt	4	8	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13760037	G	G	13760037	1	3	174	0	1	0	0	0	0	0	0	0	13617	841	29	4		4	RNMT	18	13760037	3'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08		13760037	64317211	143	141982											
LAMA3	3909	broad.mit.edu	37	chr18	21329449	21329449	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaatatggctgtcacccGggatgatgatgtactttgtg	13	7	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21329449	T	T	21329449	3	4	174	1	0	0	0	0	1	0	0	0	8679	1116	39	1	637	1	LAMA3	18	21329449	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	7569412	21329449	56747799	144	141983											
ZNF521	25925	broad.mit.edu	37	chr18	22669583	22669583	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgaacttgggttattttgTttccgaaatgccctcagtcg	10	8	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22669583	C	C	22669583	1	2	174	0	1	0	0	0	0	0	0	0	18092	1740	60	5		5	ZNF521	18	22669583	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	1340134	22669583	55407665	145	141984											
KIAA1632	57724	broad.mit.edu	37	chr18	43450467	43450467	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactatgcctaacaaccacaGtgaccaggctgctccctaga	7	15	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43450467	A	A	43450467	1	1	174	0	1	0	0	0	0	0	0	0	8319	1044	36	4		4	KIAA1632	18	43450467	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	20780884	43450467	34626781	146	141985											
ABCA7	10347	broad.mit.edu	37	chr19	1065435	1065435	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctctgagcctccctccCctgcggggccgcggggaggc	16	16	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1065435	G	G	1065435	1	3	174	0	1	0	0	0	0	0	0	0	37	638	22	4		4	ABCA7	19	1065435	3'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08		1065435	58063548	147	141986											
VAV1	7409	broad.mit.edu	37	chr19	6820593	6820593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagataattcaatttcatGgaagagggtctgtgctttca	10	5	4	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6820593	T	T	6820593	1	4	174	0	1	0	0	0	0	0	0	0	17258	1363	47	2		2	VAV1	19	6820593	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	5755158	6820593	52308390	148	141987											
EMR1	2015	broad.mit.edu	37	chr19	6897650	6897650	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagggattttctcatgtAgggataagaaaattggggct	13	3	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6897650	T	T	6897650	1	4	174	0	1	0	0	0	0	0	0	0	5146	435	15	5		5	EMR1	19	6897650	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	77057	6897650	52231333	149	141988											
AKAP8L	26993	broad.mit.edu	37	chr19	15511220	15511220	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccttttttttttttttTaaaagaaaccaagtttatta	5	4	0	1	rs141168895		TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15511220	A	A	15511220	1	1	174	0	1	0	0	0	0	0	0	0	458	1769	61	5		5	AKAP8L	19	15511220	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	8613570	15511220	43617763	150	141989											
LIN37	55957	broad.mit.edu	37	chr19	36245235	36245235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaggtgagcgtcccccaGcctgcttgcccctcgtaggg	13	16	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36245235	T	T	36245235	1	4	174	0	1	0	0	0	0	0	0	0	8880	986	34	3		3	LIN37	19	36245235	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	20734015	36245235	22883748	151	141990											
ALKBH6	84964	broad.mit.edu	37	chr19	36501775	36501775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtctgagtggggggacacGggccgagggtgtgtggttac	20	6	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36501775	T	T	36501775	1	4	174	0	1	0	0	0	0	0	0	0	531	1131	39	1		1	ALKBH6	19	36501775	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	256540	36501775	22627208	152	141991											
ZNF461	92283	broad.mit.edu	37	chr19	37130957	37130957	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgccaagtctgaaagataaGaaatatattttaactcctgg	7	6	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37130957	A	A	37130957	1	1	174	0	1	0	0	0	0	0	0	0	18052	957	33	4		4	ZNF461	19	37130957	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	629182	37130957	21998026	153	141992											
ZNF570	148268	broad.mit.edu	37	chr19	37967220	37967220	+	Intron	DEL	T	-	-													acagcatgacaaaactctacTtttttttttcgtatttgcag							TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37967220	-	-	37967220	6	5	174	0	1	1	0	1	0	0	0	0	18129	1624	56	0		0	ZNF570	19	37967220	Intron	DEL	T	TCGA-50-6597-01A-11D-1855-08	836263	37967220	21161763	154	141993											
ZNF781	163115	broad.mit.edu	37	chr19	38160111	38160111	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcttgcattactgacattCataaggtttttcattagtat	5	7	3	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38160111	A	A	38160111	3	1	174	1	0	0	0	0	1	0	0	0	18283	826	29	3	48	3	ZNF781	19	38160111	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	192891	38160111	20968872	155	141994											
ZNF155	7711	broad.mit.edu	37	chr19	44495995	44495995	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccttacctattcacaggGcatcaaccgttccaccaaga	6	14	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44495995	A	A	44495995	2	1	174	1	0	0	0	0	0	0	0	1	17862	1217	42	4		4	ZNF155	19	44495995	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	6335884	44495995	14632988	156	141995											
IGFL3	388555	broad.mit.edu	37	chr19	46627241	46627241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggggccaaaagactcGggacagcagagctcaaagca	14	10	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46627241	T	T	46627241	2	4	174	1	0	0	0	0	0	0	0	1	7658	1103	39	1		1	IGFL3	19	46627241	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	2131246	46627241	12501742	157	141996											
CNOT3	4849	broad.mit.edu	37	chr19	54655947	54655947	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagtgctcaggccaggcctCttgtttcctccccaggcccc	9	18	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54655947	G	G	54655947	1	3	174	0	1	0	0	0	0	0	0	0	3652	928	32	4		4	CNOT3	19	54655947	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	8028706	54655947	4473036	158	141997											
LILRB5	10990	broad.mit.edu	37	chr19	54755918	54755918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaggggcggggcctcaccCgagcatccatctccaccccg	12	18	2	0	rs76522818	byFrequency;by1000genomes	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54755918	A	A	54755918	3	1	174	1	0	0	0	0	1	0	0	0	8866	666	23	1	155	1	LILRB5	19	54755918	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	99971	54755918	4373065	159	141998											
LILRA1	11024	broad.mit.edu	37	chr19	55107879	55107879	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcccactcggggacctAcaggtgctacggctcactca	10	16	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55107879	C	C	55107879	3	2	174	1	0	0	0	0	1	0	0	0	8856	391	14	5	1206	5	LILRA1	19	55107879	Missense_Mutation	SNP	A	TCGA-50-6597-01A-11D-1855-08	351961	55107879	4021104	160	141999											
HAO1	54363	broad.mit.edu	37	chr20	7866404	7866404	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacaaacacagccttggcGccaagagccagagctttcag	9	15	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7866404	A	A	7866404	2	1	174	1	0	0	0	0	0	0	0	1	7017	1074	38	4		4	HAO1	20	7866404	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08		7866404	55159116	161	142000											
PLCB1	23236	broad.mit.edu	37	chr20	8782791	8782791	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccccaaccctcaagctcTcaagtggtgaccaccgtcct	6	19	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8782791	C	C	8782791	1	2	174	0	1	0	0	0	0	0	0	0	12122	1551	54	5		5	PLCB1	20	8782791	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	916387	8782791	54242729	162	142001											
C20orf114	92747	broad.mit.edu	37	chr20	31890785	31890785	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggacactcccgagtttTttatagaccaaggccatgcc	8	13	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31890785	C	C	31890785	3	2	174	1	0	0	0	0	1	0	0	0	2104	1841	64	5	1083	5	C20orf114	20	31890785	Missense_Mutation	SNP	T	TCGA-50-6597-01A-11D-1855-08	23107994	31890785	31134735	163	142002											
EPB41L1	2036	broad.mit.edu	37	chr20	34797690	34797690	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaccgggacaaaagcgactCggacactgagggcctgctgt	14	12	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34797690	T	T	34797690	3	4	174	1	0	0	0	0	1	0	0	0	5194	893	31	4	2003	4	EPB41L1	20	34797690	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	2906905	34797690	28227830	164	142003											
C20orf132	140699	broad.mit.edu	37	chr20	35783530	35783530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggccgtggcccgttccCgctcatggtctttgactgac	12	14	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35783530	A	A	35783530	3	1	174	1	0	0	0	0	1	0	0	0	2108	652	23	1	2194	1	C20orf132	20	35783530	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	985840	35783530	27241990	165	142004											
HNF4A	3172	broad.mit.edu	37	chr20	43058158	43058158	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtctgtctgtttgtcctTccagccacccctgagacccc	7	18	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43058158	C	C	43058158	1	2	174	0	1	0	0	0	0	0	0	0	7320	1798	62	5		5	HNF4A	20	43058158	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	7274628	43058158	19967362	166	142005											
CDH4	1002	broad.mit.edu	37	chr20	60503472	60503472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaactggaccatcaccCgcctgaacggtgagcccgcc	12	15	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60503472	A	A	60503472	3	1	174	1	0	0	0	0	1	0	0	0	3142	652	23	1	2042	1	CDH4	20	60503472	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	17445314	60503472	2522048	167	142006											
SLC17A9	63910	broad.mit.edu	37	chr20	61598914	61598914	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccccaggacacaggggactCagtgtgtgggacttggtcac	15	11	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61598914	T	T	61598914	1	4	174	0	1	0	0	0	0	0	0	0	14537	841	29	4		4	SLC17A9	20	61598914	3'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08	1095442	61598914	1426606	168	142007											
EEF1A2	1917	broad.mit.edu	37	chr20	62127397	62127397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccttccccatctggagcgGgtgagggtcacggctgaggg	16	12	2	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62127397	A	A	62127397	1	1	174	0	1	0	0	0	0	0	0	0	4964	1247	43	4		4	EEF1A2	20	62127397	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	528483	62127397	898123	169	142008											
C20orf195	79025	broad.mit.edu	37	chr20	62187706	62187706	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccggctgcgctggttcgtCaccatccagccagccacatc	10	18	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62187706	T	T	62187706	2	4	174	1	0	0	0	0	0	0	0	1	2122	813	29	4		4	C20orf195	20	62187706	Silent	SNP	C	TCGA-50-6597-01A-11D-1855-08	60309	62187706	837814	170	142009											
C20orf195	79025	broad.mit.edu	37	chr20	62187996	62187996	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgattttctaatatttatCcactaataaagaagagtgta	6	4	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62187996	T	T	62187996	1	4	174	0	1	0	0	0	0	0	0	0	2122	870	30	4		4	C20orf195	20	62187996	3'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08	290	62187996	837524	171	142010											
GMEB2	26205	broad.mit.edu	37	chr20	62234341	62234341	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacatttcacattgatgcCgggacacacaaacttcctcc	5	14	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62234341	T	T	62234341	3	4	174	1	0	0	0	0	1	0	0	0	6552	652	23	4	1286	4	GMEB2	20	62234341	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	46345	62234341	791179	172	142011											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212371	28212371	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacattccccagcttccatGaaaaggcgtctaaatggaga	8	12	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28212371	A	A	28212371	3	1	174	1	0	0	0	0	1	0	0	0	255	1290	45	4	1244	4	ADAMTS1	21	28212371	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08		28212371	19917524	173	142012											
SYNJ1	8867	broad.mit.edu	37	chr21	34099161	34099161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactatgaggctgaaaggtgGgggatccaatttgtgataga	14	5	0	4			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34099161	T	T	34099161	3	4	174	1	0	0	0	0	1	0	0	0	15571	1232	43	2	4833	2	SYNJ1	21	34099161	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	5886790	34099161	14030734	174	142013											
KCNJ15	3772	broad.mit.edu	37	chr21	39671440	39671440	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttttggagtcatctactAtgccatcgcgtttattcatg	7	10	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39671440	G	G	39671440	3	3	174	1	0	0	0	0	1	0	0	0	8119	449	16	5	259	5	KCNJ15	21	39671440	Missense_Mutation	SNP	A	TCGA-50-6597-01A-11D-1855-08	5572279	39671440	8458455	175	142014											
PRDM15	63977	broad.mit.edu	37	chr21	43226299	43226299	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaccatcaccaccaccatCaccaccaccaccaccatcac	0	24	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43226299	T	T	43226299	1	4	174	0	1	0	0	0	0	0	0	0	12562	841	29	4		4	PRDM15	21	43226299	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	3554859	43226299	4903596	176	142015											
MCM3AP	8888	broad.mit.edu	37	chr21	47697543	47697543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggagagcacacatggccCgaggccctcggagccctcgg	16	14	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47697543	A	A	47697543	3	1	174	1	0	0	0	0	1	0	0	0	9481	652	23	1	4282	1	MCM3AP	21	47697543	Missense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	4471244	47697543	432352	177	142016											
OR11H1	81061	broad.mit.edu	37	chr22	16449695	16449695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagaggaagatctgaattGtccactcacaagagaaacct	9	8	2	5			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16449695	T	T	16449695	3	4	174	1	0	0	0	0	1	0	0	0	11020	1377	48	3	872	3	OR11H1	22	16449695	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08		16449695	34854871	178	142017											
RFPL1	5988	broad.mit.edu	37	chr22	29834951	29834951	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtccctggagtgtggatgCgctgtctgcttcaagtgcat	13	9	2	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29834951	T	T	29834951	2	4	174	1	0	0	0	0	0	0	0	1	13361	776	27	4		4	RFPL1	22	29834951	Silent	SNP	C	TCGA-50-6597-01A-11D-1855-08	13385256	29834951	21469615	179	142018											
OSBP2	23762	broad.mit.edu	37	chr22	31284164	31284164	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacttagggaggcgagattGagccttttgtgaggttacaa	15	5	0	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31284164	C	C	31284164	1	2	174	0	1	0	0	0	0	0	0	0	11368	1305	45	4		4	OSBP2	22	31284164	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	1449213	31284164	20020402	180	142019											
KCNJ4	3761	broad.mit.edu	37	chr22	38824042	38824042	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacttgttgctcaggttggcGaagtacacgttgcattggcc	13	9	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38824042	A	A	38824042	2	1	174	1	0	0	0	0	0	0	0	1	8123	1049	37	4		4	KCNJ4	22	38824042	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	7539878	38824042	12480524	181	142020											
MLC1	23209	broad.mit.edu	37	chr22	50515157	50515157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcgcacgccgccatgcGgtgtagacagccaactcttc	12	14	1	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50515157	T	T	50515157	1	4	174	0	1	0	0	0	0	0	0	0	9705	1131	39	1		1	MLC1	22	50515157	Intron	SNP	G	TCGA-50-6597-01A-11D-1855-08	11691115	50515157	789409	182	142021											
ASMT	438	broad.mit.edu	37	chrX	1743365	1743365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggaggtgggggctgcCcccaggcagatgctgggagg	21	9	0	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1743365	A	A	1743365	1	1	174	0	1	0	0	0	0	0	0	0	1049	638	22	2		2	ASMT	23	1743365	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08		1743365	153527195	183	142022											
NLGN4X	57502	broad.mit.edu	37	chrX	5811410	5811410	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcgtttggtggttggCcatatcttggcgggagatcg	18	7	1	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5811410	T	T	5811410	4	4	174	1	0	0	0	0	0	1	0	0	10559	740	26	4	555	4	NLGN4X	23	5811410	Nonsense_Mutation	SNP	C	TCGA-50-6597-01A-11D-1855-08	4068045	5811410	149459150	184	142023											
EIF2S3	1968	broad.mit.edu	37	chrX	24094881	24094881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagaggagtgacaatcaaGccaacagtagatgatgactg	12	6	1	6			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24094881	T	T	24094881	3	4	174	1	0	0	0	0	1	0	0	0	5051	962	34	3	1444	3	EIF2S3	23	24094881	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	18283471	24094881	131175679	185	142024											
SSX5	6758	broad.mit.edu	37	chrX	48046211	48046211	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgctatacacctgatgacGagggatccgcagccatgccc	10	14	0	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48046211	A	A	48046211	1	1	174	0	1	0	0	0	0	0	0	0	15326	1073	37	4		4	SSX5	23	48046211	3'UTR	SNP	G	TCGA-50-6597-01A-11D-1855-08	23951330	48046211	107224349	186	142025											
PORCN	64840	broad.mit.edu	37	chrX	48368171	48368171	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgtgtccctgctttgacaGatctatccatctggccatcc	7	14	3	2			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48368171	A	A	48368171	5	1	174	1	0	0	0	0	0	0	1	0	12353	956	33	4		4	PORCN	23	48368171	Splice_Site	SNP	G	TCGA-50-6597-01A-11D-1855-08	321960	48368171	106902389	187	142026											
SSX7	280658	broad.mit.edu	37	chrX	52682434	52682434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccctgggccactactctgCtccctccaggtcacctcacc	6	21	3	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52682434	T	T	52682434	1	4	174	0	1	0	0	0	0	0	0	0	15327	812	28	4		4	SSX7	23	52682434	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	4314263	52682434	102588126	188	142027											
GPR174	84636	broad.mit.edu	37	chrX	78427197	78427197	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacagaaagccttgaagatGattctaacctgtgcaggggt	11	7	1	4			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78427197	A	A	78427197	3	1	174	1	0	0	0	0	1	0	0	0	6737	1290	45	4	695	4	GPR174	23	78427197	Missense_Mutation	SNP	G	TCGA-50-6597-01A-11D-1855-08	25744763	78427197	76843363	189	142028											
KLHL4	56062	broad.mit.edu	37	chrX	86924389	86924389	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgaaagagactctggggCactaaattcagatcctttct	9	9	3	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86924389	A	A	86924389	1	1	174	0	1	0	0	0	0	0	0	0	8462	710	25	3		3	KLHL4	23	86924389	3'UTR	SNP	C	TCGA-50-6597-01A-11D-1855-08	8497192	86924389	68346171	190	142029											
PLP1	5354	broad.mit.edu	37	chrX	103041668	103041668	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgacaaggtgatcatcctcAggattttgtggcaataacaa	9	9	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103041668	T	T	103041668	1	4	174	0	1	0	0	0	0	0	0	0	12199	203	7	5		5	PLP1	23	103041668	Intron	SNP	A	TCGA-50-6597-01A-11D-1855-08	16117279	103041668	52228892	191	142030											
SH2D1A	4068	broad.mit.edu	37	chrX	123499814	123499814	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccaatccaaaattgttcaTggatcattaagaaagcttta	5	8	2	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123499814	C	C	123499814	1	2	174	0	1	0	0	0	0	0	0	0	14343	1479	51	5		5	SH2D1A	23	123499814	Intron	SNP	T	TCGA-50-6597-01A-11D-1855-08	20458146	123499814	31770746	192	142031											
ODZ1	10178	broad.mit.edu	37	chrX	123538839	123538839	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaacaaacaaacaaaaCacctataaaagttctatatc	1	9	1	0			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123538839	A	A	123538839	1	1	174	0	1	0	0	0	0	0	0	0	10929	493	17	3		3	ODZ1	23	123538839	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	39025	123538839	31731721	193	142032											
SLITRK2	84631	broad.mit.edu	37	chrX	144905473	144905473	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccatttttctcacctgccCgtgaaaggggttctggatca	9	11	3	1			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144905473	A	A	144905473	2	1	174	1	0	0	0	0	0	0	0	1	14857	639	23	1		1	SLITRK2	23	144905473	Silent	SNP	C	TCGA-50-6597-01A-11D-1855-08	21366634	144905473	10365087	194	142033											
PLXNA3	55558	broad.mit.edu	37	chrX	153698805	153698805	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcacactgcagaagttcgtGgatgacctctttgagacagt	12	9	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153698805	C	C	153698805	2	2	174	1	0	0	0	0	0	0	0	1	12216	1335	47	4		4	PLXNA3	23	153698805	Silent	SNP	G	TCGA-50-6597-01A-11D-1855-08	8793332	153698805	1571755	195	142034											
MPP1	4354	broad.mit.edu	37	chrX	154020020	154020020	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaatccctgaatcaaaccCcacccagagctcccacagag	5	16	1	3			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154020020	T	T	154020020	1	4	174	0	1	0	0	0	0	0	0	0	9827	638	22	4		4	MPP1	23	154020020	Intron	SNP	C	TCGA-50-6597-01A-11D-1855-08	321215	154020020	1250540	196	142035											
MIB2	142678	broad.mit.edu	37	chr1	1563878	1563878	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccctccccagggccgctgtGacgtgaacgtgcgcaaccgg	13	17	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1563878	A	A	1563878	3	1	175	1	0	0	0	0	1	0	0	0	9660	1290	45	4	2385	4	MIB2	1	1563878	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08		1563878	247686743	1	142036											
CDK11B	984	broad.mit.edu	37	chr1	1586707	1586707	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctatgtcacagtaactctagGaaagagtaaaccttaatagt	7	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1586707	A	A	1586707	1	1	175	0	1	0	0	0	0	0	0	0	3157	1189	41	4		4	CDK11B	1	1586707	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	22829	1586707	247663914	2	142037											
PANK4	55229	broad.mit.edu	37	chr1	2440356	2440356	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgctcggccagccacGcgttcttgatgacggccagc	12	17	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2440356	C	C	2440356	3	2	175	1	0	0	0	0	1	0	0	0	11513	1087	38	4	73	4	PANK4	1	2440356	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	853649	2440356	246810265	3	142038											
PTCHD2	57540	broad.mit.edu	37	chr1	11596438	11596438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcggcacgtgggcgtgGccatcgtctccagtgccctc	14	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11596438	T	T	11596438	3	4	175	1	0	0	0	0	1	0	0	0	12839	1203	42	3	3952	3	PTCHD2	1	11596438	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	9156082	11596438	237654183	4	142039											
CLCN6	1185	broad.mit.edu	37	chr1	11879714	11879714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatagtattagaagggccGcttattagctattcagcttt	9	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11879714	T	T	11879714	1	4	175	0	1	0	0	0	0	0	0	0	3498	1102	38	3		3	CLCN6	1	11879714	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	283276	11879714	237370907	5	142040											
SPATA21	374955	broad.mit.edu	37	chr1	16727321	16727321	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagcttctgcaaccgcagCcggcctacggccgcttccat	11	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16727321	T	T	16727321	2	4	175	1	0	0	0	0	0	0	0	1	15123	726	26	4		4	SPATA21	1	16727321	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	4847607	16727321	232523300	6	142041											
NBPF1	55672	broad.mit.edu	37	chr1	16894104	16894104	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagctcagtgaattggccAggtgacacactgatgaggga	15	7	1	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16894104	G	G	16894104	1	3	175	0	1	0	0	0	0	0	0	0	10286	203	7	5		5	NBPF1	1	16894104	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	166783	16894104	232356517	7	142042											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17961112	17961112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggctctggggctctgGtgccatgtgattctggatat	15	8	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17961112	T	T	17961112	1	4	175	0	1	0	0	0	0	0	0	0	897	1276	44	3		3	ARHGEF10L	1	17961112	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1067008	17961112	231289509	8	142043											
PLA2G2A	5320	broad.mit.edu	37	chr1	20304613	20304613	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtcatgagtgacacagcAgctgtgaggagacaccctgt	12	10	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20304613	T	T	20304613	3	4	175	1	0	0	0	0	1	0	0	0	12090	202	7	5	255	5	PLA2G2A	1	20304613	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2343501	20304613	228946008	9	142044											
NBPF3	84224	broad.mit.edu	37	chr1	21801677	21801677	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaactagccaaacagggAtttcttgttgatcttttcaa	9	7	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21801677	T	T	21801677	1	4	175	0	1	0	0	0	0	0	0	0	10292	348	12	5		5	NBPF3	1	21801677	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1497064	21801677	227448944	10	142045											
ZBTB40	9923	broad.mit.edu	37	chr1	22837737	22837737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcagtgctgagcagagcCatggaaaaatcagtcccggc	13	10	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22837737	A	A	22837737	2	1	175	1	0	0	0	0	0	0	0	1	17668	581	21	2		2	ZBTB40	1	22837737	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1036060	22837737	226412884	11	142046											
LIN28A	79727	broad.mit.edu	37	chr1	26738039	26738039	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccgcccgcgccggggtcgCgctcgaccccccagtggatg	15	18	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26738039	T	T	26738039	3	4	175	1	0	0	0	0	1	0	0	0	8878	768	27	4	200	4	LIN28A	1	26738039	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	3900302	26738039	222512582	12	142047											
SESN2	83667	broad.mit.edu	37	chr1	28607141	28607141	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaggaaatggtgaggtaAgtgggtcagggatcaaggca	18	3	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28607141	G	G	28607141	1	3	175	0	1	0	0	0	0	0	0	0	14238	87	3	5		5	SESN2	1	28607141	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1869102	28607141	220643480	13	142048											
MATN1	4146	broad.mit.edu	37	chr1	31194232	31194232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaacagcagcatcctaGcagggtggcgtgcacgtacc	11	14	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31194232	T	T	31194232	1	4	175	0	1	0	0	0	0	0	0	0	9425	986	34	3		3	MATN1	1	31194232	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2587091	31194232	218056389	14	142049											
ZSCAN20	7579	broad.mit.edu	37	chr1	33954745	33954745	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccgagtccctactctccCaaagatggggagcgttggag	12	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33954745	T	T	33954745	3	4	175	1	0	0	0	0	1	0	0	0	18361	594	21	4	645	4	ZSCAN20	1	33954745	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2760513	33954745	215295876	15	142050											
CSMD2	114784	broad.mit.edu	37	chr1	34554714	34554714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtccacgtgcagttggCgtaattggggtagccatatg	15	7	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34554714	A	A	34554714	3	1	175	1	0	0	0	0	1	0	0	0	3979	768	27	3	10587	3	CSMD2	1	34554714	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	599969	34554714	214695907	16	142051											
NCDN	23154	broad.mit.edu	37	chr1	36029491	36029491	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggctcctcatggcccgGctccttagcacctctccagg	11	17	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36029491	A	A	36029491	2	1	175	1	0	0	0	0	0	0	0	1	10309	1190	42	4		4	NCDN	1	36029491	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	1474777	36029491	213221130	17	142052											
MACF1	23499	broad.mit.edu	37	chr1	39765882	39765882	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttttcttatcattttgtagGatgaaaaggagcagcttata	8	4	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39765882	C	C	39765882	3	2	175	1	0	0	0	0	1	0	0	0	9232	1188	41	4	2579	4	MACF1	1	39765882	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3736391	39765882	209484739	18	142053											
MACF1	23499	broad.mit.edu	37	chr1	39788376	39788376	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctttcctcttcagatgccAtcactcaagaggtgagaggg	11	10	4	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39788376	G	G	39788376	3	3	175	1	0	0	0	0	1	0	0	0	9232	217	8	5	4263	5	MACF1	1	39788376	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	22494	39788376	209462245	19	142054											
MFSD2A	84879	broad.mit.edu	37	chr1	40433393	40433393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggatctcagtgagtgggGttgaagagcagagcctgggt	18	5	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40433393	A	A	40433393	1	1	175	0	1	0	0	0	0	0	0	0	9623	1276	44	4		4	MFSD2A	1	40433393	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	645017	40433393	208817228	20	142055											
NFYC	4802	broad.mit.edu	37	chr1	41236480	41236480	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctccgacgggcaggccCcccaggtgaccggcgactga	14	17	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41236480	T	T	41236480	3	4	175	1	0	0	0	0	1	0	0	0	10486	623	22	4	1083	4	NFYC	1	41236480	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	803087	41236480	208014141	21	142056											
SCMH1	22955	broad.mit.edu	37	chr1	41564600	41564600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtccctcctgaccactgGgtcagccatgaagaagatag	10	11	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41564600	A	A	41564600	1	1	175	0	1	0	0	0	0	0	0	0	14021	1247	43	4		4	SCMH1	1	41564600	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	328120	41564600	207686021	22	142057											
EDN2	1907	broad.mit.edu	37	chr1	41948217	41948217	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccttggcagggagcggcgCcggcgtcttggcgggtttcc	18	13	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41948217	T	T	41948217	2	4	175	1	0	0	0	0	0	0	0	1	4957	726	26	4		4	EDN2	1	41948217	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	383617	41948217	207302404	23	142058											
MED8	112950	broad.mit.edu	37	chr1	43852785	43852785	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaaggaaaatacaacctgaGacataatatctagtttgcta	6	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43852785	C	C	43852785	1	2	175	0	1	0	0	0	0	0	0	0	9546	957	33	4		4	MED8	1	43852785	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1904568	43852785	205397836	24	142059											
PIK3R3	8503	broad.mit.edu	37	chr1	46527515	46527515	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggctgtgcagtttgaggGggtaaaagaaaacaagacag	15	4	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46527515	A	A	46527515	1	1	175	0	1	0	0	0	0	0	0	0	12015	1247	43	4		4	PIK3R3	1	46527515	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2674730	46527515	202723106	25	142060											
STIL	6491	broad.mit.edu	37	chr1	47761390	47761390	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacatgcttatcatatacaTttgaacatttggctgataag	6	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47761390	C	C	47761390	1	2	175	0	1	0	0	0	0	0	0	0	15400	1508	52	5		5	STIL	1	47761390	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1233875	47761390	201489231	26	142061											
NRD1	4898	broad.mit.edu	37	chr1	52301803	52301803	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatattttacaaattcttacTgtgctccaaaaagtgtgcca	6	8	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52301803	C	C	52301803	3	2	175	1	0	0	0	0	1	0	0	0	10740	1594	55	5	2859	5	NRD1	1	52301803	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	4540413	52301803	196948818	27	142062											
ZFYVE9	9372	broad.mit.edu	37	chr1	52704107	52704107	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccggtctggtttacctttgCttctcaaaccagacatgcct	7	13	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52704107	T	T	52704107	3	4	175	1	0	0	0	0	1	0	0	0	17797	797	28	4	1024	4	ZFYVE9	1	52704107	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	402304	52704107	196546514	28	142063											
ZCCHC11	23318	broad.mit.edu	37	chr1	52981763	52981763	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactcagttatcatcagaaCtggtaaatttttaaattttt	4	6	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52981763	A	A	52981763	1	1	175	0	1	0	0	0	0	0	0	0	17706	580	20	3		3	ZCCHC11	1	52981763	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	277656	52981763	196268858	29	142064											
LRRC42	115353	broad.mit.edu	37	chr1	54427876	54427876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaattggtatttagaaagGgctggtatttatgatggtct	12	3	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54427876	T	T	54427876	1	4	175	0	1	0	0	0	0	0	0	0	9087	1247	43	2		2	LRRC42	1	54427876	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1446113	54427876	194822745	30	142065											
SSBP3	23648	broad.mit.edu	37	chr1	54707730	54707730	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaagcatcaggagagtccTgctgcatctcccacttcccg	9	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54707730	A	A	54707730	1	1	175	0	1	0	0	0	0	0	0	0	15299	1595	55	5		5	SSBP3	1	54707730	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	279854	54707730	194542891	31	142066											
TTC22	55001	broad.mit.edu	37	chr1	55266541	55266541	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattggcccaggcattgaggTtgcccgggtgctcgtgggcc	17	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55266541	C	C	55266541	3	2	175	1	0	0	0	0	1	0	0	0	16815	1725	60	5	1544	5	TTC22	1	55266541	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	558811	55266541	193984080	32	142067											
C1orf168	199920	broad.mit.edu	37	chr1	57185334	57185334	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcagtccatagcatttgatCttgatttttctaaggtgacc	8	8	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57185334	G	G	57185334	1	3	175	0	1	0	0	0	0	0	0	0	2032	928	32	4		4	C1orf168	1	57185334	3'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	1918793	57185334	192065287	33	142068											
C8B	732	broad.mit.edu	37	chr1	57411795	57411795	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaggaatctggaacgagaaGatgaactttacaaataccat	8	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57411795	C	C	57411795	1	2	175	0	1	0	0	0	0	0	0	0	2442	957	33	4		4	C8B	1	57411795	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	226461	57411795	191838826	34	142069											
DAB1	1600	broad.mit.edu	37	chr1	58515013	58515013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcttcggcggcatccaCgggcagaaaggagcaagctg	14	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58515013	A	A	58515013	1	1	175	0	1	0	0	0	0	0	0	0	4250	551	19	3		3	DAB1	1	58515013	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1103218	58515013	190735608	35	142070											
KANK4	163782	broad.mit.edu	37	chr1	62747332	62747332	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaggaggatacagaagtGgtgagtctcattagcgtttg	14	4	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62747332	A	A	62747332	1	1	175	0	1	0	0	0	0	0	0	0	8049	1363	47	4		4	KANK4	1	62747332	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4232319	62747332	186503289	36	142071											
ALG6	29929	broad.mit.edu	37	chr1	63885123	63885123	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcactgtaagtagaaaCatttgaaatatgtgtttatt	9	3	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63885123	T	T	63885123	1	4	175	0	1	0	0	0	0	0	0	0	522	493	17	4		4	ALG6	1	63885123	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1137791	63885123	185365498	37	142072											
PDE4B	5142	broad.mit.edu	37	chr1	66723195	66723195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtgccaaattgtgagtcCtgtcttatatccaggtagaa	9	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66723195	A	A	66723195	1	1	175	0	1	0	0	0	0	0	0	0	11734	696	24	2		2	PDE4B	1	66723195	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2838072	66723195	182527426	38	142073											
PDE4B	5142	broad.mit.edu	37	chr1	66838408	66838408	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctatccttgatgagcatgCcagctatgtggtagggccag	12	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66838408	A	A	66838408	1	1	175	0	1	0	0	0	0	0	0	0	11734	754	26	3		3	PDE4B	1	66838408	3'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	115213	66838408	182412213	39	142074											
DIRAS3	9077	broad.mit.edu	37	chr1	68512673	68512673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccccgggctataacgtggCgctgcagagcgcggttgccg	17	13	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68512673	A	A	68512673	3	1	175	1	0	0	0	0	1	0	0	0	4572	768	27	3	385	3	DIRAS3	1	68512673	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1674265	68512673	180737948	40	142075											
WLS	79971	broad.mit.edu	37	chr1	68620705	68620705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatttctcagatgagacaGgtgaggcatagaggtgccaa	12	9	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68620705	T	T	68620705	1	4	175	0	1	0	0	0	0	0	0	0	17503	1015	35	2		2	WLS	1	68620705	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	108032	68620705	180629916	41	142076											
DEPDC1	55635	broad.mit.edu	37	chr1	68949537	68949537	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaataatttgtaggctgcCacctttatatttacctatgg	6	7	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68949537	G	G	68949537	1	3	175	0	1	0	0	0	0	0	0	0	4479	609	21	4		4	DEPDC1	1	68949537	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	328832	68949537	180301084	42	142077											
NEGR1	257194	broad.mit.edu	37	chr1	72163599	72163599	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttaccaatagacaacctCttaaaaacagcaacataaat	2	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72163599	T	T	72163599	1	4	175	0	1	0	0	0	0	0	0	0	10412	928	32	4		4	NEGR1	1	72163599	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3214062	72163599	177087022	43	142078											
NEGR1	257194	broad.mit.edu	37	chr1	72163734	72163734	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcacatctgggaatgacacAtcattttccgcactgcattc	6	13	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72163734	T	T	72163734	3	4	175	1	0	0	0	0	1	0	0	0	10412	214	8	5	456	5	NEGR1	1	72163734	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	135	72163734	177086887	44	142079											
RABGGTB	5876	broad.mit.edu	37	chr1	76251861	76251861	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgtggtcagctatatcGgagcgcgatgggggcctgag	17	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76251861	C	C	76251861	1	2	175	0	1	0	0	0	0	0	0	0	13076	1131	39	4		4	RABGGTB	1	76251861	5'Flank	SNP	G	TCGA-55-1592-01A-01D-0969-08	4088127	76251861	172998760	45	142080											
AK5	26289	broad.mit.edu	37	chr1	77876759	77876759	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaagaggctgcagcaggtAagtcactgtgtcctttagac	11	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77876759	C	C	77876759	1	2	175	0	1	0	0	0	0	0	0	0	443	377	13	5		5	AK5	1	77876759	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1624898	77876759	171373862	46	142081											
ZZZ3	26009	broad.mit.edu	37	chr1	78098634	78098634	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccttgtctgattttatagGagaatcttcttctgaactgt	7	8	4	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78098634	A	A	78098634	3	1	175	1	0	0	0	0	1	0	0	0	18385	1174	41	4	2349	4	ZZZ3	1	78098634	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	221875	78098634	171151987	47	142082											
IFI44	10561	broad.mit.edu	37	chr1	79129581	79129581	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacagaccaaagagaagtatCtaagaccaaagggatgtgtt	10	7	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79129581	A	A	79129581	1	1	175	0	1	0	0	0	0	0	0	0	7587	928	32	3		3	IFI44	1	79129581	3'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	1030947	79129581	170121040	48	142083											
ZNHIT6	54680	broad.mit.edu	37	chr1	86123355	86123355	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agattatacgctcttagaaaCagaagagtagcagcattgca	9	7	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86123355	T	T	86123355	1	4	175	0	1	0	0	0	0	0	0	0	18338	493	17	4		4	ZNHIT6	1	86123355	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	6993774	86123355	163127266	49	142084											
GBP3	2635	broad.mit.edu	37	chr1	89481013	89481013	+	Missense_Mutation	SNP	G	A	A													cagtgtcaagcaggactaagGtgtgttctggctttttgggg					rs142900270	byFrequency;by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89481013	A	A	89481013	3	1	175	1	0	0	0	0	1	0	0	0	6337	1261	44	4	1548	4	GBP3	1	89481013	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3357658	89481013	159769608	50	142085	612	2									
GBP3	2635	broad.mit.edu	37	chr1	89481019	89481019	+	Missense_Mutation	SNP	T	G	G													caagcaggactaaggtgtgtTctggctttttggggtgaggc							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89481019	G	G	89481019	3	3	175	1	0	0	0	0	1	0	0	0	6337	1783	62	5	1554	5	GBP3	1	89481019	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	6	89481019	159769602	51	142086	612	2									
LRRC8C	84230	broad.mit.edu	37	chr1	90178876	90178876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggtgaagaagttcagGctgcatgtggaagaaggtga	17	3	1	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90178876	T	T	90178876	3	4	175	1	0	0	0	0	1	0	0	0	9110	1194	42	3	753	3	LRRC8C	1	90178876	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	697857	90178876	159071745	52	142087											
ZNF644	84146	broad.mit.edu	37	chr1	91406850	91406850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatattgttggcaagccCatttaacacatttagtctag	6	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91406850	A	A	91406850	3	1	175	1	0	0	0	0	1	0	0	0	18187	594	21	2	3938	2	ZNF644	1	91406850	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1227974	91406850	157843771	53	142088											
GLMN	11146	broad.mit.edu	37	chr1	92754745	92754745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcgctcatcaagtatgCtaaacatgggacaagaaatt	9	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92754745	T	T	92754745	1	4	175	0	1	0	0	0	0	0	0	0	6512	812	28	4		4	GLMN	1	92754745	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1347895	92754745	156495876	54	142089											
LPPR5	163404	broad.mit.edu	37	chr1	99470209	99470209	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatgctgctggtgagcgCcgcgggcagcaggggcatgc	19	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99470209	T	T	99470209	3	4	175	1	0	0	0	0	1	0	0	0	9015	739	26	4	970	4	LPPR5	1	99470209	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	6715464	99470209	149780412	55	142090											
HIAT1	64645	broad.mit.edu	37	chr1	100535061	100535061	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttataaatgaattacaTttatttttttctggcccatt	4	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100535061	A	A	100535061	1	1	175	0	1	0	0	0	0	0	0	0	7164	1508	52	5		5	HIAT1	1	100535061	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1064852	100535061	148715560	56	142091											
OLFM3	118427	broad.mit.edu	37	chr1	102271669	102271669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctaaagggtctgtcatcCaagcaccaaatcgggttcca	9	11	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102271669	A	A	102271669	3	1	175	1	0	0	0	0	1	0	0	0	10949	595	21	2	722	2	OLFM3	1	102271669	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1736608	102271669	146978952	57	142092											
EPS8L3	79574	broad.mit.edu	37	chr1	110294756	110294756	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtccccaggctgagggtcaTggttgtgtgtcttctcctga	14	10	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110294756	C	C	110294756	3	2	175	1	0	0	0	0	1	0	0	0	5239	1464	51	5	506	5	EPS8L3	1	110294756	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	8023087	110294756	138955865	58	142093											
KCNA2	3737	broad.mit.edu	37	chr1	111146592	111146592	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcttctcagccaactctgtCcccagggtgatgaagtaggg	13	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111146592	T	T	111146592	2	4	175	1	0	0	0	0	0	0	0	1	8073	842	30	4		4	KCNA2	1	111146592	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	851836	111146592	138104029	59	142094											
KCNA2	3737	broad.mit.edu	37	chr1	111147346	111147346	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctgggtcataggtgtccTgtgggtgcccagggagggca	17	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111147346	C	C	111147346	3	2	175	1	0	0	0	0	1	0	0	0	8073	1580	55	5	1444	5	KCNA2	1	111147346	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	754	111147346	138103275	60	142095											
C1orf103	55791	broad.mit.edu	37	chr1	111494316	111494316	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggacttgaactcactgtcTgtaacgtgtcttttcttact	7	10	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111494316	C	C	111494316	3	2	175	1	0	0	0	0	1	0	0	0	1997	1580	55	5	1131	5	C1orf103	1	111494316	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	346970	111494316	137756305	61	142096											
DDX20	11218	broad.mit.edu	37	chr1	112308806	112308806	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaaatccatcagccatAcacgttgacttttgctgaat	5	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112308806	G	G	112308806	3	3	175	1	0	0	0	0	1	0	0	0	4381	391	14	5	1802	5	DDX20	1	112308806	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	814490	112308806	136941815	62	142097											
LRIG2	9860	broad.mit.edu	37	chr1	113638833	113638833	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attccttaccttccacatttCttgttttcagtgatttgtcc	4	11	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113638833	G	G	113638833	1	3	175	0	1	0	0	0	0	0	0	0	9032	928	32	4		4	LRIG2	1	113638833	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1330027	113638833	135611788	63	142098											
AMPD1	270	broad.mit.edu	37	chr1	115220842	115220842	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgtggtgctttcaggcAgcgtggtaagccaagatggt	15	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115220842	G	G	115220842	1	3	175	0	1	0	0	0	0	0	0	0	585	203	7	5		5	AMPD1	1	115220842	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1582009	115220842	134029779	64	142099											
TTF2	8458	broad.mit.edu	37	chr1	117618733	117618733	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtttgggtgtttcaggctAttttaatctgaaactattca	9	5	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117618733	G	G	117618733	1	3	175	0	1	0	0	0	0	0	0	0	16845	464	16	5		5	TTF2	1	117618733	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2397891	117618733	131631888	65	142100											
ZNF697	90874	broad.mit.edu	37	chr1	120165639	120165639	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttacgcccgaagcccttccCgcactcgcggcacacgtagg	11	17	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120165639	T	T	120165639	3	4	175	1	0	0	0	0	1	0	0	0	18227	652	23	4	314	4	ZNF697	1	120165639	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2546906	120165639	129084982	66	142101											
PSMD4	5710	broad.mit.edu	37	chr1	151237258	151237258	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accgagtgacagaggaaagaGctgagtgattcctctggtta	13	7	1	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151237258	C	C	151237258	1	2	175	0	1	0	0	0	0	0	0	0	12806	986	34	4		4	PSMD4	1	151237258	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	31071619	151237258	98013363	67	142102											
LCE3A	353142	broad.mit.edu	37	chr1	152595433	152595433	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcggcatctgtggtgactCaggcagcagctgcgctcgga	15	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152595433	G	G	152595433	2	3	175	1	0	0	0	0	0	0	0	1	8741	813	29	4		4	LCE3A	1	152595433	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1358175	152595433	96655188	68	142103											
S100A8	6279	broad.mit.edu	37	chr1	153363077	153363077	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcccatggcagggaatttGcatctggccagggcagtacg	13	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153363077	A	A	153363077	1	1	175	0	1	0	0	0	0	0	0	0	13897	1334	46	4		4	S100A8	1	153363077	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	767644	153363077	95887544	69	142104											
INSRR	3645	broad.mit.edu	37	chr1	156823768	156823768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcttctccacacgcacaGccccacgcagcacggcccca	8	20	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156823768	T	T	156823768	3	4	175	1	0	0	0	0	1	0	0	0	7844	971	34	3	3563	3	INSRR	1	156823768	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3460691	156823768	92426853	70	142105											
FCRL5	83416	broad.mit.edu	37	chr1	157513954	157513955	+	Intron	INS	-	T	T													cccattctcacaggtacgagINSttttttctacagagactggt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157513955	T	T	157513954	6	5	175	0	1	1	1	0	0	0	0	0	5855	1044	36	0		0	FCRL5	1	157513954	Intron	INS	-	TCGA-55-1592-01A-01D-0969-08	690186	157513954	91736667	71	142106											
CD5L	922	broad.mit.edu	37	chr1	157811523	157811523	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaggtgatgagctgaaaTttaaggctagaaggaggtcc	15	4	0	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157811523	G	G	157811523	1	3	175	0	1	0	0	0	0	0	0	0	3057	1508	52	5		5	CD5L	1	157811523	5'UTR	SNP	T	TCGA-55-1592-01A-01D-0969-08	297569	157811523	91439098	72	142107											
KIRREL	55243	broad.mit.edu	37	chr1	158063317	158063317	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgcttggggtggatgggAggttggcccttgagctccag	18	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158063317	T	T	158063317	1	4	175	0	1	0	0	0	0	0	0	0	8395	319	11	5		5	KIRREL	1	158063317	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	251794	158063317	91187304	73	142108											
OR10T2	128360	broad.mit.edu	37	chr1	158368853	158368853	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccttttgtttatgatgAgtgtgtacctcagagggtga	12	7	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158368853	C	C	158368853	3	2	175	1	0	0	0	0	1	0	0	0	11013	304	11	5	542	5	OR10T2	1	158368853	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	305536	158368853	90881768	74	142109											
SPTA1	6708	broad.mit.edu	37	chr1	158592678	158592678	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgcaataaaaggtttttgTattatccaaactgagtttcc	6	6	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158592678	C	C	158592678	1	2	175	0	1	0	0	0	0	0	0	0	15234	1653	57	5		5	SPTA1	1	158592678	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	223825	158592678	90657943	75	142110											
OR6N1	128372	broad.mit.edu	37	chr1	158735615	158735615	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaagctgtagatgaagggGttgaggaagggtgtgagcac	18	5	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158735615	A	A	158735615	2	1	175	1	0	0	0	0	0	0	0	1	11300	1252	44	4		4	OR6N1	1	158735615	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	142937	158735615	90515006	76	142111											
TAGLN2	8407	broad.mit.edu	37	chr1	159890305	159890305	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccctgttggccattccaaTgggtggcggtggctgcgggg	17	11	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159890305	A	A	159890305	1	1	175	0	1	0	0	0	0	0	0	0	15658	1479	51	5		5	TAGLN2	1	159890305	5'UTR	SNP	T	TCGA-55-1592-01A-01D-0969-08	1154690	159890305	89360316	77	142112											
SLAMF9	89886	broad.mit.edu	37	chr1	159923368	159923368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctggtggtatttccaggGggaggctgatggactcctga	15	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159923368	T	T	159923368	3	4	175	1	0	0	0	0	1	0	0	0	14484	1232	43	2	759	2	SLAMF9	1	159923368	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	33063	159923368	89327253	78	142113											
ATP1A4	480	broad.mit.edu	37	chr1	160140884	160140884	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaggaggaggggctgGgttcaacctggggcgagatg	20	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160140884	C	C	160140884	1	2	175	0	1	0	0	0	0	0	0	0	1135	1247	43	4		4	ATP1A4	1	160140884	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	217516	160140884	89109737	79	142114											
FCRLB	127943	broad.mit.edu	37	chr1	161692781	161692781	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctttcctgttctgcagttCcaagcagtgggcaagctggt	11	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161692781	A	A	161692781	3	1	175	1	0	0	0	0	1	0	0	0	5858	855	30	3	40	3	FCRLB	1	161692781	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1551897	161692781	87557840	80	142115											
RGS4	5999	broad.mit.edu	37	chr1	163043250	163043250	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctgtatcataggtggGctggcagctttcaaagcttt	10	9	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163043250	C	C	163043250	2	2	175	1	0	0	0	0	0	0	0	1	13416	1190	42	4		4	RGS4	1	163043250	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	1350469	163043250	86207371	81	142116											
RGS5	8490	broad.mit.edu	37	chr1	163172591	163172591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggttctcacctttccaggCatgagtggggcaaagctgca	12	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163172591	A	A	163172591	3	1	175	1	0	0	0	0	1	0	0	0	13417	710	25	3	530	3	RGS5	1	163172591	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	129341	163172591	86078030	82	142117											
TMCO1	54499	broad.mit.edu	37	chr1	165788877	165788877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaatggcacaactgtccaCacaggcattcaccccagaaa	6	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165788877	A	A	165788877	1	1	175	0	1	0	0	0	0	0	0	0	16118	493	17	3		3	TMCO1	1	165788877	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2616286	165788877	83461744	83	142118											
GPA33	10223	broad.mit.edu	37	chr1	167023848	167023848	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacactgggctgaaaggctGggctgagagtaaaggtgcca	17	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167023848	A	A	167023848	1	1	175	0	1	0	0	0	0	0	0	0	6651	1363	47	4		4	GPA33	1	167023848	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1234971	167023848	82226773	84	142119											
POU2F1	5451	broad.mit.edu	37	chr1	167370604	167370604	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaggtgtctcaattccaAgatcaaagaaagactgtaaa	8	7	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167370604	G	G	167370604	1	3	175	0	1	0	0	0	0	0	0	0	12367	87	3	5		5	POU2F1	1	167370604	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	346756	167370604	81880017	85	142120											
BRP44	25874	broad.mit.edu	37	chr1	167906269	167906269	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcgggggccccggggcggAggcgctgaggtcgccgccta	21	13	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167906269	G	G	167906269	1	3	175	0	1	0	0	0	0	0	0	0	1527	319	11	5		5	BRP44	1	167906269	5'Flank	SNP	A	TCGA-55-1592-01A-01D-0969-08	535665	167906269	81344352	86	142121											
TIPRL	261726	broad.mit.edu	37	chr1	168165948	168165948	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgttgtttaattgtcaatCtgagaatttgaaattaaaca	7	3	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168165948	G	G	168165948	1	3	175	0	1	0	0	0	0	0	0	0	16049	928	32	4		4	TIPRL	1	168165948	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	259679	168165948	81084673	87	142122											
XCL1	6375	broad.mit.edu	37	chr1	168550295	168550295	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttgcgttacagttttaTtaccaaacgtggcctaaaag	7	9	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168550295	C	C	168550295	3	2	175	1	0	0	0	0	1	0	0	0	17550	1493	52	5	192	5	XCL1	1	168550295	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	384347	168550295	80700326	88	142123											
SELP	6403	broad.mit.edu	37	chr1	169563083	169563083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaagtaggatcaccaaagGtcctgggaatgctgacaagc	11	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169563083	T	T	169563083	1	4	175	0	1	0	0	0	0	0	0	0	14132	1276	44	3		3	SELP	1	169563083	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1012788	169563083	79687538	89	142124											
C1orf156	92342	broad.mit.edu	37	chr1	169761944	169761944	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattactataataatctgggTtgtaaatggtttctgaggtg	10	3	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169761944	C	C	169761944	3	2	175	1	0	0	0	0	1	0	0	0	2026	1725	60	5	229	5	C1orf156	1	169761944	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	198861	169761944	79488677	90	142125											
TNN	63923	broad.mit.edu	37	chr1	175063368	175063368	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaccaggggagcaagaaaGctgacaccaatgccctcaca	10	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175063368	A	A	175063368	3	1	175	1	0	0	0	0	1	0	0	0	16446	971	34	4	1589	4	TNN	1	175063368	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	5301424	175063368	74187253	91	142126											
TNN	63923	broad.mit.edu	37	chr1	175097583	175097583	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggagttgatgagaaaaaTaagatatgagtgaagagttg	15	0	0	6			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175097583	C	C	175097583	1	2	175	0	1	0	0	0	0	0	0	0	16446	1421	49	5		5	TNN	1	175097583	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	34215	175097583	74153038	92	142127											
TNR	7143	broad.mit.edu	37	chr1	175331897	175331897	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggttcagtctggtgatgGtgaattctgtcacagtgttg	14	6	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175331897	C	C	175331897	3	2	175	1	0	0	0	0	1	0	0	0	16461	1261	44	4	1360	4	TNR	1	175331897	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	234314	175331897	73918724	93	142128											
PAPPA2	60676	broad.mit.edu	37	chr1	176564340	176564340	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaggtggtgaacatctgtGatgatgagggcctaaacccc	12	10	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176564340	T	T	176564340	3	4	175	1	0	0	0	0	1	0	0	0	11527	1290	45	3	1606	3	PAPPA2	1	176564340	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1232443	176564340	72686281	94	142129											
PAPPA2	60676	broad.mit.edu	37	chr1	176675665	176675665	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagttcttgatatcctgtaAcatctagcttagtgattata	7	6	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176675665	T	T	176675665	1	4	175	0	1	0	0	0	0	0	0	0	11527	58	2	5		5	PAPPA2	1	176675665	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	111325	176675665	72574956	95	142130											
ASTN1	460	broad.mit.edu	37	chr1	176845597	176845597	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctattcaactctcttggTccttctgtcctcatagcaag	6	12	5	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176845597	C	C	176845597	1	2	175	0	1	0	0	0	0	0	0	0	1068	1682	58	5		5	ASTN1	1	176845597	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	169932	176845597	72405024	96	142131											
ASTN1	460	broad.mit.edu	37	chr1	176903498	176903498	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatggagaggcatcacccaaGggtaagaatgagggctcaga	14	7	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176903498	C	C	176903498	1	2	175	0	1	0	0	0	0	0	0	0	1068	1015	35	4		4	ASTN1	1	176903498	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	57901	176903498	72347123	97	142132											
LAMC2	3918	broad.mit.edu	37	chr1	183189974	183189974	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtgtcgatcaggttActataatctggatgggggga	15	6	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183189974	T	T	183189974	3	4	175	1	0	0	0	0	1	0	0	0	8687	391	14	5	536	5	LAMC2	1	183189974	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	6286476	183189974	66060647	98	142133											
RGL1	23179	broad.mit.edu	37	chr1	183885633	183885633	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccattccatggacacaaattCctcagggatgtcttccttaa	6	12	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183885633	T	T	183885633	3	4	175	1	0	0	0	0	1	0	0	0	13384	855	30	4	1969	4	RGL1	1	183885633	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	695659	183885633	65364988	99	142134											
HMCN1	83872	broad.mit.edu	37	chr1	185815075	185815075	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtaaccatgtactgcaagGtgaaaagacatctataaaca	7	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185815075	A	A	185815075	1	1	175	0	1	0	0	0	0	0	0	0	7287	1276	44	4		4	HMCN1	1	185815075	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1929442	185815075	63435546	100	142135											
PRG4	10216	broad.mit.edu	37	chr1	186279075	186279075	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagaaccaaagccgtggaaGagtgctagtttgggttgttt	14	5	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186279075	C	C	186279075	1	2	175	0	1	0	0	0	0	0	0	0	12587	957	33	4		4	PRG4	1	186279075	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	464000	186279075	62971546	101	142136											
TPR	7175	broad.mit.edu	37	chr1	186327834	186327834	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttccttctaggatttatAcaagtaataaagacatacaa	4	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186327834	G	G	186327834	1	3	175	0	1	0	0	0	0	0	0	0	16540	406	14	5		5	TPR	1	186327834	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	48759	186327834	62922787	102	142137											
FAM5C	339479	broad.mit.edu	37	chr1	190424085	190424085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacacctagacaaaatacaCaggcaattagttaactccta	4	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190424085	A	A	190424085	1	1	175	0	1	0	0	0	0	0	0	0	5645	493	17	3		3	FAM5C	1	190424085	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4096251	190424085	58826536	103	142138											
RGS1	5996	broad.mit.edu	37	chr1	192547444	192547444	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgaagactataagaaaacaGagtctgatcttttgccctgt	9	7	2	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192547444	A	A	192547444	3	1	175	1	0	0	0	0	1	0	0	0	13401	943	33	4	387	4	RGS1	1	192547444	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2123359	192547444	56703177	104	142139											
CDC73	79577	broad.mit.edu	37	chr1	193205522	193205522	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatttactgtatccagtataGaaatgttctcactttattta	4	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193205522	C	C	193205522	1	2	175	0	1	0	0	0	0	0	0	0	3115	957	33	4		4	CDC73	1	193205522	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	658078	193205522	56045099	105	142140											
KCNT2	343450	broad.mit.edu	37	chr1	196205220	196205220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagaagataaataaatgcCaagtttgttatactgcttat	6	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196205220	A	A	196205220	1	1	175	0	1	0	0	0	0	0	0	0	8162	609	21	2		2	KCNT2	1	196205220	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2999698	196205220	53045401	106	142141											
KCNT2	343450	broad.mit.edu	37	chr1	196342234	196342234	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttattgttttttatataAtttaaaaggttaacttaaag	4	4	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196342234	G	G	196342234	1	3	175	0	1	0	0	0	0	0	0	0	8162	116	4	5		5	KCNT2	1	196342234	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	137014	196342234	52908387	107	142142											
CFHR3	10878	broad.mit.edu	37	chr1	196744097	196744097	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttaaaagagatctaaacActcagcttccctcttaaatg	5	9	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196744097	C	C	196744097	1	2	175	0	1	0	0	0	0	0	0	0	3316	174	6	5		5	CFHR3	1	196744097	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	401863	196744097	52506524	108	142143											
CFHR3	10878	broad.mit.edu	37	chr1	196749110	196749110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcatccgtgtcagtaagtAcaccgctctgagatcccagc	9	13	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196749110	T	T	196749110	1	4	175	0	1	0	0	0	0	0	0	0	3316	406	14	5		5	CFHR3	1	196749110	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	5013	196749110	52501511	109	142144											
CFHR5	81494	broad.mit.edu	37	chr1	196971714	196971714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaagtagctgttctctGtaaagaaaactatctacttc	6	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196971714	T	T	196971714	3	4	175	1	0	0	0	0	1	0	0	0	3318	1377	48	3	1280	3	CFHR5	1	196971714	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	222604	196971714	52278907	110	142145											
CRB1	23418	broad.mit.edu	37	chr1	197297545	197297545	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttgttactttttatttcCttgtagattccttttgcaat	4	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197297545	T	T	197297545	1	4	175	0	1	0	0	0	0	0	0	0	3880	696	24	4		4	CRB1	1	197297545	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	325831	197297545	51953076	111	142146											
IGFN1	91156	broad.mit.edu	37	chr1	201184303	201184303	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggcccagccctgccctGccctgccctgtcctgtccca	9	20	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201184303	A	A	201184303	1	1	175	0	1	0	0	0	0	0	0	0	7660	1334	46	4		4	IGFN1	1	201184303	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3886758	201184303	48066318	112	142147											
IPO9	55705	broad.mit.edu	37	chr1	201827572	201827572	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattagctcttctctctctaTaggctgtggccacagatttc	7	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201827572	C	C	201827572	1	2	175	0	1	0	0	0	0	0	0	0	7869	1421	49	5		5	IPO9	1	201827572	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	643269	201827572	47423049	113	142148											
PPP1R12B	4660	broad.mit.edu	37	chr1	202338695	202338695	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagataagctatcaagtctgCcctttctgccttcttcttag	7	11	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202338695	T	T	202338695	1	4	175	0	1	0	0	0	0	0	0	0	12456	754	26	4		4	PPP1R12B	1	202338695	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	511123	202338695	46911926	114	142149											
PPP1R12B	4660	broad.mit.edu	37	chr1	202465792	202465792	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcatcacttggaagtcaAttctcattgcccatgtttga	8	9	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202465792	G	G	202465792	1	3	175	0	1	0	0	0	0	0	0	0	12456	116	4	5		5	PPP1R12B	1	202465792	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	127097	202465792	46784829	115	142150											
PRELP	5549	broad.mit.edu	37	chr1	203452913	203452913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagaacctgctgctcctgGatctccagcacaacaggctg	11	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203452913	T	T	203452913	3	4	175	1	0	0	0	0	1	0	0	0	12579	1174	41	3	603	3	PRELP	1	203452913	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	987121	203452913	45797708	116	142151											
CNTN2	6900	broad.mit.edu	37	chr1	205033700	205033701	+	Intron	DNP	CC	AT	AT													gtcacaggagttggccagccCcagggacaaccatgcctgag							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	205033701	AT	AT	205033700	1	1	175	0	1	0	0	0	0	0	0	0	3673	638	22	2		2	CNTN2	1	205033700	Intron	DNP	CC	TCGA-55-1592-01A-01D-0969-08	1580787	205033700	44216921	117	142152											
SLC45A3	85414	broad.mit.edu	37	chr1	205631992	205631992	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtctccgggcctcggtgccCggctcagctctgggcacgcc	14	17	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205631992	G	G	205631992	2	3	175	1	0	0	0	0	0	0	0	1	14756	639	23	4		4	SLC45A3	1	205631992	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	598292	205631992	43618629	118	142153											
PIGR	5284	broad.mit.edu	37	chr1	207112588	207112588	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaaatgtgccgttctcCgggaagttggtgaggttagc	13	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207112588	A	A	207112588	2	1	175	1	0	0	0	0	0	0	0	1	11992	639	23	1		1	PIGR	1	207112588	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1480596	207112588	42138033	119	142154											
CR1	1378	broad.mit.edu	37	chr1	207751639	207751639	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgttaagggggaggtatgtAtggtgaggagggtgggaaag	21	0	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207751639	T	T	207751639	1	4	175	0	1	0	0	0	0	0	0	0	3872	464	16	5		5	CR1	1	207751639	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	639051	207751639	41498982	120	142155											
CR1L	1379	broad.mit.edu	37	chr1	207867885	207867885	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatgatcaagtgggcatctgGagtggcccagcccctcagtg	14	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207867885	A	A	207867885	4	1	175	1	0	0	0	0	0	1	0	0	3873	1183	41	4	669	4	CR1L	1	207867885	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	116246	207867885	41382736	121	142156											
KCNH1	3756	broad.mit.edu	37	chr1	210970655	210970655	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttttcttattgaaataCtccagatatcaaacagtgac	4	9	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210970655	A	A	210970655	1	1	175	0	1	0	0	0	0	0	0	0	8101	580	20	3		3	KCNH1	1	210970655	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3102770	210970655	38279966	122	142157											
FAM71A	149647	broad.mit.edu	37	chr1	212799845	212799845	+	Frame_Shift_Del	DEL	G	-	-													aaccttactacaaaagtagtGggcacaccacatggcagaga							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	212799845	-	-	212799845	7	5	175	1	0	1	0	1	0	0	0	0	5658	1335	47	0	1628	0	FAM71A	1	212799845	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	1829190	212799845	36450776	123	142158											
USH2A	7399	broad.mit.edu	37	chr1	216052133	216052133	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggtccatttggcttggatGgtggttgccaagaaatcaca	12	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216052133	C	C	216052133	3	2	175	1	0	0	0	0	1	0	0	0	17162	1348	47	4	7201	4	USH2A	1	216052133	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3252288	216052133	33198488	124	142159											
USH2A	7399	broad.mit.edu	37	chr1	216219937	216219937	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgaacctcttgtggggctGtggaagaaaagatttataga	13	5	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216219937	A	A	216219937	1	1	175	0	1	0	0	0	0	0	0	0	17162	1392	48	4		4	USH2A	1	216219937	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	167804	216219937	33030684	125	142160											
USH2A	7399	broad.mit.edu	37	chr1	216348530	216348530	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattcattgtaaagggatatGaaaatatagaaaacattttg	7	2	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216348530	A	A	216348530	1	1	175	0	1	0	0	0	0	0	0	0	17162	1305	45	4		4	USH2A	1	216348530	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	128593	216348530	32902091	126	142161											
USH2A	7399	broad.mit.edu	37	chr1	216501001	216501001	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaactgctctaaacctgcAaatacacacatgtgcataat	4	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216501001	T	T	216501001	1	4	175	0	1	0	0	0	0	0	0	0	17162	145	5	5		5	USH2A	1	216501001	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	152471	216501001	32749620	127	142162											
IARS2	55699	broad.mit.edu	37	chr1	220319070	220319070	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatctccaactttccagtgGactgggtttattctaaaggt	8	9	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220319070	A	A	220319070	1	1	175	0	1	0	0	0	0	0	0	0	7544	1189	41	4		4	IARS2	1	220319070	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3818069	220319070	28931551	128	142163											
FAM177B	400823	broad.mit.edu	37	chr1	222922783	222922783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttagtaattcagtttacGcaagtgctcgttctttcttt	7	7	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222922783	T	T	222922783	1	4	175	0	1	0	0	0	0	0	0	0	5547	1102	38	3		3	FAM177B	1	222922783	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2603713	222922783	26327838	129	142164											
DISP1	84976	broad.mit.edu	37	chr1	223178410	223178410	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaatttttcaacagccaagCaaagaatttagggatgcctg	9	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223178410	G	G	223178410	3	3	175	1	0	0	0	0	1	0	0	0	4579	710	25	4	3697	4	DISP1	1	223178410	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	255627	223178410	26072211	130	142165											
LIN9	286826	broad.mit.edu	37	chr1	226426782	226426782	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaattcaatgctgatggGcatggaatatgatttctgag	11	5	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226426782	A	A	226426782	3	1	175	1	0	0	0	0	1	0	0	0	8886	1203	42	4	509	4	LIN9	1	226426782	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3248372	226426782	22823839	131	142166											
OBSCN	84033	broad.mit.edu	37	chr1	228509331	228509331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcagatgtgcgagcccGctggctgaaggatggtgtgg	18	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228509331	T	T	228509331	3	4	175	1	0	0	0	0	1	0	0	0	10907	1087	38	3	15003	3	OBSCN	1	228509331	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2082549	228509331	20741290	132	142167											
CAPN9	10753	broad.mit.edu	37	chr1	230903521	230903521	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catagtgcattccaggcactAtgctggggctgtaccaggta	12	10	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230903521	T	T	230903521	1	4	175	0	1	0	0	0	0	0	0	0	2658	464	16	5		5	CAPN9	1	230903521	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2394190	230903521	18347100	133	142168											
C1orf57	84284	broad.mit.edu	37	chr1	233086548	233086548	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgggggcgcgcgggctGcgggcgaccttgtgctgtcg	23	10	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233086548	T	T	233086548	1	4	175	0	1	0	0	0	0	0	0	0	2071	1334	46	3		3	C1orf57	1	233086548	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2183027	233086548	16164073	134	142169											
RYR2	6262	broad.mit.edu	37	chr1	237802406	237802406	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctttgagaggagaaggtggGaatgggcttcttgcagcaat	16	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237802406	A	A	237802406	2	1	175	1	0	0	0	0	0	0	0	1	13880	1161	41	4		4	RYR2	1	237802406	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	4715858	237802406	11448215	135	142170											
RYR2	6262	broad.mit.edu	37	chr1	237868661	237868661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtaacacagaaacatgtGcagtgctttgagatatgaag	11	6	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237868661	T	T	237868661	1	4	175	0	1	0	0	0	0	0	0	0	13880	1334	46	3		3	RYR2	1	237868661	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	66255	237868661	11381960	136	142171											
RYR2	6262	broad.mit.edu	37	chr1	237948113	237948114	+	Nonsense_Mutation	DNP	GG	TT	TT													gaggatctgaccgacttaaaGgagctgacagaggaaagtga							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	237948114	TT	TT	237948113	4	4	175	1	0	0	0	0	0	1	0	0	13880	991	35	2	13459	2	RYR2	1	237948113	Nonsense_Mutation	DNP	GG	TCGA-55-1592-01A-01D-0969-08	79452	237948113	11302508	137	142172											
ZP4	57829	broad.mit.edu	37	chr1	238048630	238048630	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcagctagaccaagagacCcagcagtcaggatgggcttc	14	11	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238048630	G	G	238048630	1	3	175	0	1	0	0	0	0	0	0	0	18347	638	22	4		4	ZP4	1	238048630	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	100517	238048630	11201991	138	142173											
FMN2	56776	broad.mit.edu	37	chr1	240493928	240493928	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatggcccaggggttaTgcaggttctaggtttggttc	13	6	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240493928	C	C	240493928	3	2	175	1	0	0	0	0	1	0	0	0	6008	1464	51	5	4505	5	FMN2	1	240493928	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	2445298	240493928	8756693	139	142174											
RGS7	6000	broad.mit.edu	37	chr1	241161913	241161913	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccaccagcccctacattGcagaggaggctccccatgtt	10	15	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241161913	T	T	241161913	1	4	175	0	1	0	0	0	0	0	0	0	13419	1334	46	3		3	RGS7	1	241161913	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	667985	241161913	8088708	140	142175											
KMO	8564	broad.mit.edu	37	chr1	241719037	241719037	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttgtcatatgatttattgGatttgtttgctgctcctttt	7	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241719037	T	T	241719037	1	4	175	0	1	0	0	0	0	0	0	0	8495	1189	41	3		3	KMO	1	241719037	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	557124	241719037	7531584	141	142176											
EXO1	9156	broad.mit.edu	37	chr1	242048689	242048689	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaacctctaggacctgccaGagccagtgggctgagcaaga	12	12	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242048689	T	T	242048689	3	4	175	1	0	0	0	0	1	0	0	0	5342	942	33	3	2331	3	EXO1	1	242048689	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	329652	242048689	7201932	142	142177											
HNRNPU	3192	broad.mit.edu	37	chr1	245018903	245018903	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctattatatccgccacgattCccaggggctaaaagacaaga	8	11	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245018903	T	T	245018903	2	4	175	1	0	0	0	0	0	0	0	1	7340	842	30	4		4	HNRNPU	1	245018903	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2970214	245018903	4231718	143	142178											
SMYD3	64754	broad.mit.edu	37	chr1	246093033	246093033	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttaacattttccattttTttgtaatttattgctaagtt	3	5	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	246093033	C	C	246093033	1	2	175	0	1	0	0	0	0	0	0	0	14937	1856	64	5		5	SMYD3	1	246093033	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1074130	246093033	3157588	144	142179											
TFB2M	64216	broad.mit.edu	37	chr1	246719866	246719866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaataggtatttgttaAtaacatacctggaattcttt	5	5	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246719866	G	G	246719866	1	3	175	0	1	0	0	0	0	0	0	0	15917	116	4	5		5	TFB2M	1	246719866	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	626833	246719866	2530755	145	142180											
OR2G2	81470	broad.mit.edu	37	chr1	247751695	247751695	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacataccaatgagagcaacCtagcaggtttcatcctttta	7	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247751695	G	G	247751695	3	3	175	1	0	0	0	0	1	0	0	0	11092	680	24	4	36	4	OR2G2	1	247751695	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1031829	247751695	1498926	146	142181											
OR2L13	284521	broad.mit.edu	37	chr1	248247333	248247333	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttttcgaagactgaagtgtCagcacaagccaaacgcacca	9	11	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247333	T	T	248247333	1	4	175	0	1	0	0	0	0	0	0	0	11100	841	29	4		4	OR2L13	1	248247333	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	495638	248247333	1003288	147	142182											
C2orf48	348738	broad.mit.edu	37	chr2	10350487	10350487	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtctggagaagcccaGccctcattgtgaagggagag	15	9	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10350487	A	A	10350487	3	1	175	1	0	0	0	0	1	0	0	0	2192	971	34	4	254	4	C2orf48	2	10350487	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08		10350487	232848886	148	142183											
FAM49A	81553	broad.mit.edu	37	chr2	16740922	16740922	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgttctttggccccacaaCtggatactttagatgcctcc	8	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16740922	A	A	16740922	1	1	175	0	1	0	0	0	0	0	0	0	5626	580	20	3		3	FAM49A	2	16740922	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	6390435	16740922	226458451	149	142184											
RAD51AP2	729475	broad.mit.edu	37	chr2	17695402	17695402	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagcaaaaagtaacttttAtataaaatattaatggtata	4	3	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17695402	G	G	17695402	1	3	175	0	1	0	0	0	0	0	0	0	13095	464	16	5		5	RAD51AP2	2	17695402	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	954480	17695402	225503971	150	142185											
WDR35	57539	broad.mit.edu	37	chr2	20153619	20153619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccttcttttcgagacCgtgtgatctgattaatttcc	6	12	3	3	rs146380332		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20153619	A	A	20153619	3	1	175	1	0	0	0	0	1	0	0	0	17416	652	23	1	2200	1	WDR35	2	20153619	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2458217	20153619	223045754	151	142186											
GPR113	165082	broad.mit.edu	37	chr2	26534034	26534034	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagcatccagaaaaaggtGgccaggtagaggaaatgaca	13	8	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26534034	C	C	26534034	2	2	175	1	0	0	0	0	0	0	0	1	6695	1335	47	4		4	GPR113	2	26534034	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	6380415	26534034	216665339	152	142187											
C2orf39	92749	broad.mit.edu	37	chr2	26676417	26676417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgggtctgaagaagcctaGgtgggctgcggggctggaag	19	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26676417	T	T	26676417	3	4	175	1	0	0	0	0	1	0	0	0	2186	1014	35	2	1973	2	C2orf39	2	26676417	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	142383	26676417	216522956	153	142188											
ALK	238	broad.mit.edu	37	chr2	29519878	29519878	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctccactagcaccaaggAcacgtttcccctcaagactc	6	16	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29519878	G	G	29519878	3	3	175	1	0	0	0	0	1	0	0	0	525	275	10	5	3253	5	ALK	2	29519878	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2843461	29519878	213679495	154	142189											
BIRC6	57448	broad.mit.edu	37	chr2	32712888	32712888	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgaattcaggagaaatGgtgtatttttacatattatt	9	2	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32712888	A	A	32712888	1	1	175	0	1	0	0	0	0	0	0	0	1444	1363	47	4		4	BIRC6	2	32712888	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3193010	32712888	210486485	155	142190											
LTBP1	4052	broad.mit.edu	37	chr2	33614141	33614142	+	Intron	DEL	AC	-	-													gtggtacgcaggagatggagAcacacgtggaagggtgtgct							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33614142	-	-	33614141	6	5	175	0	1	1	0	1	0	0	0	0	9160	290	10	0		0	LTBP1	2	33614141	Intron	DEL	AC	TCGA-55-1592-01A-01D-0969-08	901253	33614141	209585232	156	142191											
RASGRP3	25780	broad.mit.edu	37	chr2	33783410	33783410	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgctgcccccaggtaatgCcctctgctttctttgctgcc	8	17	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33783410	T	T	33783410	1	4	175	0	1	0	0	0	0	0	0	0	13184	754	26	4		4	RASGRP3	2	33783410	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	169269	33783410	209415963	157	142192											
STRN	6801	broad.mit.edu	37	chr2	37076792	37076792	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatccaaaaaaaaaattaaaAggaaaaattacattaacatg	3	4	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37076792	C	C	37076792	1	2	175	0	1	0	0	0	0	0	0	0	15447	87	3	5		5	STRN	2	37076792	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	3293382	37076792	206122581	158	142193											
HEATR5B	54497	broad.mit.edu	37	chr2	37302747	37302747	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccacttagaactttctgtaGactcattaagatttcacttc	4	10	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37302747	A	A	37302747	2	1	175	1	0	0	0	0	0	0	0	1	7099	933	33	4		4	HEATR5B	2	37302747	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	225955	37302747	205896626	159	142194											
CYP1B1	1545	broad.mit.edu	37	chr2	38297933	38297933	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagctccatggactctctgaGagtgacattgactttaaatg	10	8	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38297933	C	C	38297933	3	2	175	1	0	0	0	0	1	0	0	0	4184	942	33	4	71	4	CYP1B1	2	38297933	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	995186	38297933	204901440	160	142195											
EML4	27436	broad.mit.edu	37	chr2	42530318	42530318	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttagtaggcacatcacgAaactttattttacgaggaac	7	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42530318	G	G	42530318	2	3	175	1	0	0	0	0	0	0	0	1	5141	233	9	5		5	EML4	2	42530318	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	4232385	42530318	200669055	161	142196											
COX7A2L	9167	broad.mit.edu	37	chr2	42578436	42578436	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccacagtcagcgccatggTggtccggtaaagcatttggt	12	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42578436	A	A	42578436	3	1	175	1	0	0	0	0	1	0	0	0	3813	1696	59	5	80	5	COX7A2L	2	42578436	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	48118	42578436	200620937	162	142197											
THADA	63892	broad.mit.edu	37	chr2	43768305	43768305	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatgtgccttacctgctccAccgtcaataatccatcagaa	5	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43768305	T	T	43768305	3	4	175	1	0	0	0	0	1	0	0	0	15963	159	6	5	2676	5	THADA	2	43768305	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1189869	43768305	199431068	163	142198											
THADA	63892	broad.mit.edu	37	chr2	43778909	43778909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccacagcactctagccgGccttcttcatttgctaacct	5	15	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43778909	T	T	43778909	1	4	175	0	1	0	0	0	0	0	0	0	15963	1218	42	3		3	THADA	2	43778909	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	10604	43778909	199420464	164	142199											
EPAS1	2034	broad.mit.edu	37	chr2	46587570	46587570	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgggagtttatgctccAgttgaggagataagcttgag	14	5	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46587570	T	T	46587570	1	4	175	0	1	0	0	0	0	0	0	0	5192	203	7	5		5	EPAS1	2	46587570	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2808661	46587570	196611803	165	142200											
TTC7A	57217	broad.mit.edu	37	chr2	47256494	47256494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctggatgttgtcaacatGgccatcaccgagcaccctga	10	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47256494	T	T	47256494	3	4	175	1	0	0	0	0	1	0	0	0	16838	1348	47	2	1831	2	TTC7A	2	47256494	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	668924	47256494	195942879	166	142201											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48896839	48896839	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatttgacttgaactttaTtgtatttctttctcttttta	3	6	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48896839	C	C	48896839	1	2	175	0	1	0	0	0	0	0	0	0	15435	1508	52	5		5	STON1-GTF2A1L	2	48896839	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1640345	48896839	194302534	167	142202											
RTN4	57142	broad.mit.edu	37	chr2	55253145	55253145	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttaattaaatcacatgcaAtagatatataaggagcttct	5	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55253145	G	G	55253145	3	3	175	1	0	0	0	0	1	0	0	0	13839	101	4	5	1554	5	RTN4	2	55253145	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	6356306	55253145	187946228	168	142203											
RTN4	57142	broad.mit.edu	37	chr2	55253716	55253716	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggtgctagtattcttctCtgttactatttgggccttct	8	8	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55253716	T	T	55253716	3	4	175	1	0	0	0	0	1	0	0	0	13839	922	32	4	2125	4	RTN4	2	55253716	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	571	55253716	187945657	169	142204											
SMEK2	57223	broad.mit.edu	37	chr2	55808847	55808847	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaatatcctggtggcaaaaCaaaacaaaacaaaacatgtt	6	7	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55808847	G	G	55808847	1	3	175	0	1	0	0	0	0	0	0	0	14908	493	17	4		4	SMEK2	2	55808847	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	555131	55808847	187390526	170	142205											
PNPT1	87178	broad.mit.edu	37	chr2	55895113	55895113	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctatagaaaaaagacaaacCaaaacaaagatttttacttt	3	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55895113	G	G	55895113	1	3	175	0	1	0	0	0	0	0	0	0	12268	609	21	4		4	PNPT1	2	55895113	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	86266	55895113	187304260	171	142206											
USP34	9736	broad.mit.edu	37	chr2	61597820	61597820	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgttcctataggaattaTaaagaattagatacaatcag	6	4	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61597820	C	C	61597820	1	2	175	0	1	0	0	0	0	0	0	0	17192	1421	49	5		5	USP34	2	61597820	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	5702707	61597820	181601553	172	142207											
UGP2	7360	broad.mit.edu	37	chr2	64069408	64069427	+	Intron	DEL	GTGGGTGGTTTGGAAGTGGA	-	-													tactgacagtggagaggttgGtgggtggtttggaagtggaa							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64069427	-	-	64069408	6	5	175	0	1	1	0	1	0	0	0	0	17069	1276	44	0		0	UGP2	2	64069408	Intron	DEL	GTGGGTGGTTTGGAAGTGGA	TCGA-55-1592-01A-01D-0969-08	2471588	64069408	179129965	173	142208											
WDR92	116143	broad.mit.edu	37	chr2	68352354	68352354	+	RNA	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttttaaaaaaacatagCtagcagatgccaacgccacc	6	12	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68352354	A	A	68352354	1	1	175	0	1	0	0	0	0	0	0	0	17466	812	28	3		3	WDR92	2	68352354	RNA	SNP	C	TCGA-55-1592-01A-01D-0969-08	4282946	68352354	174847019	174	142209											
ANTXR1	84168	broad.mit.edu	37	chr2	69304605	69304605	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacggctttcaggctctgcaAggcatcatccactcagtaag	10	12	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69304605	G	G	69304605	2	3	175	1	0	0	0	0	0	0	0	1	711	69	3	5		5	ANTXR1	2	69304605	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	952251	69304605	173894768	175	142210											
CD207	50489	broad.mit.edu	37	chr2	71060027	71060027	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcccataggcacagcacTcacctgctcactctctgagg	9	15	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71060027	C	C	71060027	1	2	175	0	1	0	0	0	0	0	0	0	3013	1566	54	5		5	CD207	2	71060027	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1755422	71060027	172139346	176	142211											
SLC4A5	57835	broad.mit.edu	37	chr2	74451873	74451873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgaggcactgctgcaggCcacccaagaagccgccctct	12	17	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74451873	A	A	74451873	1	1	175	0	1	0	0	0	0	0	0	0	14771	754	26	3		3	SLC4A5	2	74451873	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3391846	74451873	168747500	177	142212											
LRRTM4	80059	broad.mit.edu	37	chr2	77746613	77746613	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgggaactgggtgaaatgTtttattgtgcagataagtaa	12	2	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77746613	A	A	77746613	3	1	175	1	0	0	0	0	1	0	0	0	9129	1725	60	5	1404	5	LRRTM4	2	77746613	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	3294740	77746613	165452760	178	142213											
REG1B	5968	broad.mit.edu	37	chr2	79314038	79314040	+	In_Frame_Del	DEL	TCT	-	-													tgattcggggattaggcagcTctgtctgggactcctggcct					rs139007123	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79314040	-	-	79314038	7	5	175	1	0	1	0	1	0	0	0	0	13319	1551	54	0	433	0	REG1B	2	79314038	In_Frame_Del	DEL	TCT	TCGA-55-1592-01A-01D-0969-08	1567425	79314038	163885335	179	142214											
CTNNA2	1496	broad.mit.edu	37	chr2	80772069	80772069	+	Intron	DEL	C	-	-													aacagtatactttccctttgCcccaacctaatattcactaa							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80772069	-	-	80772069	6	5	175	0	1	1	0	1	0	0	0	0	4047	754	26	0		0	CTNNA2	2	80772069	Intron	DEL	C	TCGA-55-1592-01A-01D-0969-08	1458031	80772069	162427304	180	142215											
CTNNA2	1496	broad.mit.edu	37	chr2	80875162	80875162	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatgagatcaatactactGatccatctgtagcctgggaa	10	8	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80875162	T	T	80875162	1	4	175	0	1	0	0	0	0	0	0	0	4047	1305	45	3		3	CTNNA2	2	80875162	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	103093	80875162	162324211	181	142216											
RETSAT	54884	broad.mit.edu	37	chr2	85578243	85578243	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagagtttatctggcctggCcaagttcacgcccagagtga	12	10	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85578243	T	T	85578243	1	4	175	0	1	0	0	0	0	0	0	0	13346	754	26	4		4	RETSAT	2	85578243	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4703081	85578243	157621130	182	142217											
ST3GAL5	8869	broad.mit.edu	37	chr2	86090336	86090336	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtgcactcagtctttactCagacgtgcctttgaatgtct	8	11	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86090336	T	T	86090336	1	4	175	0	1	0	0	0	0	0	0	0	15336	841	29	4		4	ST3GAL5	2	86090336	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	512093	86090336	157109037	183	142218											
POLR1A	25885	broad.mit.edu	37	chr2	86274400	86274400	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcatgcctgcagattaaatCagcacagtggtcagtgactt	10	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86274400	T	T	86274400	1	4	175	0	1	0	0	0	0	0	0	0	12304	841	29	4		4	POLR1A	2	86274400	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	184064	86274400	156924973	184	142219											
RMND5A	64795	broad.mit.edu	37	chr2	87377099	87377099	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcccagatcgactcagCttggattgtttacaataagc	8	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87377099	G	G	87377099	1	3	175	0	1	0	0	0	0	0	0	0	13508	812	28	4		4	RMND5A	2	87377099	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1102699	87377099	155822274	185	142220											
EIF2AK3	9451	broad.mit.edu	37	chr2	88885469	88885469	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgtaaaagaagaacaggatCctttttgcggatattcttgt	10	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88885469	G	G	88885469	3	3	175	1	0	0	0	0	1	0	0	0	5038	855	30	4	1846	4	EIF2AK3	2	88885469	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1508370	88885469	154313904	186	142221											
VWA3B	200403	broad.mit.edu	37	chr2	98823026	98823026	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaagtcctgttggtcctgaGactttgagcagaatcatgaa	11	7	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98823026	T	T	98823026	1	4	175	0	1	0	0	0	0	0	0	0	17368	957	33	3		3	VWA3B	2	98823026	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	9937557	98823026	144376347	187	142222											
VWA3B	200403	broad.mit.edu	37	chr2	98853298	98853298	+	Intron	DEL	C	-	-													gtaacagaaatgtattttagCcactgggggaaaaagtattt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98853298	-	-	98853298	6	5	175	0	1	1	0	1	0	0	0	0	17368	754	26	0		0	VWA3B	2	98853298	Intron	DEL	C	TCGA-55-1592-01A-01D-0969-08	30272	98853298	144346075	188	142223											
INPP4A	3631	broad.mit.edu	37	chr2	99193584	99193584	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccccgcaggtcttcaccCaggccctggagtgcatgcgc	13	16	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99193584	T	T	99193584	4	4	175	1	0	0	0	0	0	1	0	0	7822	595	21	4	2869	4	INPP4A	2	99193584	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	340286	99193584	144005789	189	142224											
TSGA10	80705	broad.mit.edu	37	chr2	99689320	99689320	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattttacttggcaaacaccAtcccctcttttagttcctta	3	12	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99689320	G	G	99689320	1	3	175	0	1	0	0	0	0	0	0	0	16742	232	8	5		5	TSGA10	2	99689320	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	495736	99689320	143510053	190	142225											
AFF3	3899	broad.mit.edu	37	chr2	100210522	100210522	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggggccttgttggctgtcCttggcctttgctcctccttg	12	13	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100210522	T	T	100210522	3	4	175	1	0	0	0	0	1	0	0	0	358	681	24	4	2123	4	AFF3	2	100210522	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	521202	100210522	142988851	191	142226											
NMS	129521	broad.mit.edu	37	chr2	101093874	101093874	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacacatccagttaaaactGgggtcagtattttattataa	6	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101093874	A	A	101093874	3	1	175	1	0	0	0	0	1	0	0	0	10597	1348	47	4	277	4	NMS	2	101093874	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	883352	101093874	142105499	192	142227											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460211	107460211	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggcagcgcctggcgtgcgtCcaggcccccaggcggggagg	20	14	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107460211	G	G	107460211	3	3	175	1	0	0	0	0	1	0	0	0	15340	855	30	4	1473	4	ST6GAL2	2	107460211	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	6366337	107460211	135739162	193	142228											
C1QL2	165257	broad.mit.edu	37	chr2	119914666	119914666	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccgcctgctgcttcagggtCcacactcccaccccagctcc	7	22	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119914666	G	G	119914666	1	3	175	0	1	0	0	0	0	0	0	0	1979	870	30	4		4	C1QL2	2	119914666	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	12454455	119914666	123284707	194	142229											
PTPN4	5775	broad.mit.edu	37	chr2	120723109	120723109	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactcactcagatccagtacAtagcctggcctgaccatgga	8	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120723109	G	G	120723109	3	3	175	1	0	0	0	0	1	0	0	0	12898	217	8	5	2540	5	PTPN4	2	120723109	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	808443	120723109	122476264	195	142230											
GLI2	2736	broad.mit.edu	37	chr2	121732831	121732831	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacatcccctgcaagtgggAggcataattacttatgtgtg	10	10	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121732831	G	G	121732831	1	3	175	0	1	0	0	0	0	0	0	0	6502	319	11	5		5	GLI2	2	121732831	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1009722	121732831	121466542	196	142231											
MYO7B	4648	broad.mit.edu	37	chr2	128394197	128394197	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttctgctcatccaccccaaGaccaaggtagctgctgggcc	10	15	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128394197	C	C	128394197	3	2	175	1	0	0	0	0	1	0	0	0	10177	933	33	4	6297	4	MYO7B	2	128394197	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	6661366	128394197	114805176	197	142232											
SMPD4	55627	broad.mit.edu	37	chr2	130932731	130932731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcatgtgtgtcagtggcCcaaagagtactactaggaga	11	10	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130932731	T	T	130932731	1	4	175	0	1	0	0	0	0	0	0	0	14921	638	22	4		4	SMPD4	2	130932731	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2538534	130932731	112266642	198	142233											
NCKAP5	344148	broad.mit.edu	37	chr2	133489461	133489461	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgttcaagggtttgggctctCatggaagaaactgcagaaag	13	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133489461	A	A	133489461	3	1	175	1	0	0	0	0	1	0	0	0	10318	826	29	3	453	3	NCKAP5	2	133489461	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2556730	133489461	109709912	199	142234											
YSK4	80122	broad.mit.edu	37	chr2	135781097	135781097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagttccaatgtgctccCattttgttggttgtatttcc	8	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135781097	A	A	135781097	1	1	175	0	1	0	0	0	0	0	0	0	17622	609	21	2		2	YSK4	2	135781097	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2291636	135781097	107418276	200	142235											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135920707	135920707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaattcagttttgtctgcaGtaggaaaagccaccactctc	7	11	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135920707	T	T	135920707	1	4	175	0	1	0	0	0	0	0	0	0	13043	1044	36	3		3	RAB3GAP1	2	135920707	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	139610	135920707	107278666	201	142236											
LRP1B	53353	broad.mit.edu	37	chr2	141032165	141032165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacaatagtggtggcacaCgtctaggaaaaaaaggcaca	10	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141032165	A	A	141032165	3	1	175	1	0	0	0	0	1	0	0	0	9042	536	19	3	857	3	LRP1B	2	141032165	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5111458	141032165	102167208	202	142237											
KYNU	8942	broad.mit.edu	37	chr2	143712289	143712289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttatctctaaagacattaAgaatgattgagtgaagtctt	7	6	2	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143712289	G	G	143712289	1	3	175	0	1	0	0	0	0	0	0	0	8659	87	3	5		5	KYNU	2	143712289	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2680124	143712289	99487084	203	142238											
GTDC1	79712	broad.mit.edu	37	chr2	144966154	144966154	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaaaacgctgaaaatgcatCctgagctctaattacctgta	6	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144966154	A	A	144966154	1	1	175	0	1	0	0	0	0	0	0	0	6916	870	30	3		3	GTDC1	2	144966154	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1253865	144966154	98233219	204	142239											
NEB	4703	broad.mit.edu	37	chr2	152467404	152467404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggcagggcggcatggggCatggggagagggagggagta	24	5	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152467404	A	A	152467404	1	1	175	0	1	0	0	0	0	0	0	0	10397	725	25	3		3	NEB	2	152467404	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	7501250	152467404	90731969	205	142240											
UPP2	151531	broad.mit.edu	37	chr2	158922352	158922352	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaagaacctcattgttgTactgctgttcattgcattgc	7	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158922352	C	C	158922352	1	2	175	0	1	0	0	0	0	0	0	0	17139	1653	57	5		5	UPP2	2	158922352	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	6454948	158922352	84277021	206	142241											
TANC1	85461	broad.mit.edu	37	chr2	160031764	160031764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacaggtggtccccagaaGgcaggtggtcagccgggctg	17	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160031764	A	A	160031764	1	1	175	0	1	0	0	0	0	0	0	0	15663	1015	35	4		4	TANC1	2	160031764	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1109412	160031764	83167609	207	142242											
MARCH7	64844	broad.mit.edu	37	chr2	160619566	160619566	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtgtatgccttggaaaGcagattgtttcatatgttga	11	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160619566	A	A	160619566	1	1	175	0	1	0	0	0	0	0	0	0	9398	986	34	4		4	MARCH7	2	160619566	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	587802	160619566	82579807	208	142243											
FAP	2191	broad.mit.edu	37	chr2	163055370	163055370	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaacacacttcttgcttggAggatagcttccaatgctaat	8	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163055370	T	T	163055370	2	4	175	1	0	0	0	0	0	0	0	1	5730	291	11	5		5	FAP	2	163055370	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	2435804	163055370	80144003	209	142244											
SCN2A	6326	broad.mit.edu	37	chr2	166201299	166201299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgactttttccactccttcCtgatcgtgttccgcgtgctg	8	13	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166201299	A	A	166201299	3	1	175	1	0	0	0	0	1	0	0	0	14029	680	24	2	2951	2	SCN2A	2	166201299	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	3145929	166201299	76998074	210	142245											
GALNT3	2591	broad.mit.edu	37	chr2	166621627	166621627	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattattttatttcacagctAtaccattgctaacattatca	2	8	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166621627	G	G	166621627	1	3	175	0	1	0	0	0	0	0	0	0	6276	464	16	5		5	GALNT3	2	166621627	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	420328	166621627	76577746	211	142246											
SCN1A	6323	broad.mit.edu	37	chr2	166900188	166900188	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttccttacattgtcatcAgtagctggcttatctattat	5	9	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166900188	T	T	166900188	1	4	175	0	1	0	0	0	0	0	0	0	14027	175	7	5		5	SCN1A	2	166900188	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	278561	166900188	76299185	212	142247											
SCN9A	6335	broad.mit.edu	37	chr2	167168167	167168167	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttcttttcttctttgggttCctttgattttctttcagcaa	5	8	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167168167	G	G	167168167	3	3	175	1	0	0	0	0	1	0	0	0	14038	864	30	4	5937	4	SCN9A	2	167168167	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	267979	167168167	76031206	213	142248											
XIRP2	129446	broad.mit.edu	37	chr2	168100642	168100642	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatgttaggcatcaaaaaTggatttttgaaacccaacct	9	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168100642	C	C	168100642	3	2	175	1	0	0	0	0	1	0	0	0	17557	1464	51	5	2770	5	XIRP2	2	168100642	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	932475	168100642	75098731	214	142249											
LRP2	4036	broad.mit.edu	37	chr2	170097415	170097415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttcctacaaagctacaCagtgactgtgacaatggtga	8	10	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170097415	A	A	170097415	1	1	175	0	1	0	0	0	0	0	0	0	9043	493	17	3		3	LRP2	2	170097415	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1996773	170097415	73101958	215	142250											
KBTBD10	10324	broad.mit.edu	37	chr2	170336019	170336019	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccagagagacgcagctaGgcctgcacggctgtggagag	17	10	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170336019	T	T	170336019	1	4	175	1	0	0	0	0	0	0	0	0	8060	1015	35	2		2	KBTBD10	2	170336019	Translation_Start_Site	SNP	G	TCGA-55-1592-01A-01D-0969-08	238604	170336019	72863354	216	142251											
UBR3	130507	broad.mit.edu	37	chr2	170911873	170911873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagtgttgaaaacaaaaaCcaattacatatgcaaggaaa	6	5	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170911873	A	A	170911873	1	1	175	0	1	0	0	0	0	0	0	0	17029	522	18	3		3	UBR3	2	170911873	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	575854	170911873	72287500	217	142252											
RAPGEF4	11069	broad.mit.edu	37	chr2	173879407	173879407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagggacctacttatagGctcagcagcttccctggaga	10	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173879407	T	T	173879407	1	4	175	0	1	0	0	0	0	0	0	0	13154	1218	42	3		3	RAPGEF4	2	173879407	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2967534	173879407	69319966	218	142253											
HOXD9	3235	broad.mit.edu	37	chr2	176988915	176988915	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagactgacccggcgcggtGctggcgggagcgctcaaggg	20	11	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176988915	T	T	176988915	1	4	175	0	1	0	0	0	0	0	0	0	7393	1334	46	3		3	HOXD9	2	176988915	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	3109508	176988915	66210458	219	142254											
TTN	7273	broad.mit.edu	37	chr2	179497651	179497651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtagagcatacctttcaCtttcagattggctgcagatt	8	9	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179497651	A	A	179497651	3	1	175	1	0	0	0	0	1	0	0	0	16861	565	20	3	65002	3	TTN	2	179497651	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2508736	179497651	63701722	220	142255											
TTN	7273	broad.mit.edu	37	chr2	179550274	179550274	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctcagcttccactctcttaGaaataatgtgcagcttttct	6	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179550274	A	A	179550274	3	1	175	1	0	0	0	0	1	0	0	0	16861	942	33	4	72106	4	TTN	2	179550274	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	52623	179550274	63649099	221	142256											
TTN	7273	broad.mit.edu	37	chr2	179574231	179574231	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagatatcataagaaatgctCatggatatataacaggcagt	8	5	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179574231	A	A	179574231	1	1	175	0	1	0	0	0	0	0	0	0	16861	841	29	3		3	TTN	2	179574231	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	23957	179574231	63625142	222	142257											
TTN	7273	broad.mit.edu	37	chr2	179592239	179592239	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actactttcttgattgtttaGagacattgtaactgaataca	6	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179592239	T	T	179592239	1	4	175	0	1	0	0	0	0	0	0	0	16861	957	33	3		3	TTN	2	179592239	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	18008	179592239	63607134	223	142258											
TTN	7273	broad.mit.edu	37	chr2	179639767	179639767	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaagtgaacctttctgtcaGagtgcatcctgtatttatct	9	8	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179639767	T	T	179639767	3	4	175	1	0	0	0	0	1	0	0	0	16861	942	33	3	104653	3	TTN	2	179639767	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	47528	179639767	63559606	224	142259											
TTN	7273	broad.mit.edu	37	chr2	179660023	179660023	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgtcaaagcaaggagGggtaactggatgtgaatcat	13	4	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179660023	C	C	179660023	1	2	175	0	1	0	0	0	0	0	0	0	16861	1247	43	4		4	TTN	2	179660023	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	20256	179660023	63539350	225	142260											
TTN	7273	broad.mit.edu	37	chr2	179664702	179664702	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattttaaaagagattctgTtaattctgactacaaagtca	5	7	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179664702	A	A	179664702	1	1	175	0	1	0	0	0	0	0	0	0	16861	1740	60	5		5	TTN	2	179664702	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	4679	179664702	63534671	226	142261											
PPP1R1C	151242	broad.mit.edu	37	chr2	182826022	182826022	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgcatggagttgctgttgtCcagggcatcaccaagattga	12	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182826022	T	T	182826022	1	4	175	0	1	0	0	0	0	0	0	0	12470	870	30	4		4	PPP1R1C	2	182826022	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3161320	182826022	60373351	227	142262											
COL3A1	1281	broad.mit.edu	37	chr2	189872536	189872536	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatgatccccatgtttcttGatctgatcttgaatgtacag	7	9	4	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189872536	C	C	189872536	1	2	175	0	1	0	0	0	0	0	0	0	3720	1305	45	4		4	COL3A1	2	189872536	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	7046514	189872536	53326837	228	142263											
HECW2	57520	broad.mit.edu	37	chr2	197182014	197182014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttggtgggagagcctcGtccaccctctggtaccggct	12	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197182014	T	T	197182014	3	4	175	1	0	0	0	0	1	0	0	0	7110	1136	40	3	2380	3	HECW2	2	197182014	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	7309478	197182014	46017359	229	142264											
HECW2	57520	broad.mit.edu	37	chr2	197194219	197194219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcatatcatatacgaaaGtctgcagaaagaagtgacta	7	7	4	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197194219	T	T	197194219	1	4	175	0	1	0	0	0	0	0	0	0	7110	1044	36	3		3	HECW2	2	197194219	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	12205	197194219	46005154	230	142265											
HECW2	57520	broad.mit.edu	37	chr2	197194473	197194473	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaatgcaatgatttttgcAtcaaacgggtattgtatcat	7	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197194473	T	T	197194473	1	4	175	0	1	0	0	0	0	0	0	0	7110	232	8	5		5	HECW2	2	197194473	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	254	197194473	46004900	231	142266											
HECW2	57520	broad.mit.edu	37	chr2	197298062	197298062	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctctgggcggcaaggctcTggaggttctctgggctcaat	15	10	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197298062	A	A	197298062	3	1	175	1	0	0	0	0	1	0	0	0	7110	1580	55	5	4744	5	HECW2	2	197298062	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	103589	197298062	45901311	232	142267											
C2orf66	401027	broad.mit.edu	37	chr2	197674127	197674127	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcattgagagagatagtcaGggaagagagagagaaagagg	16	2	2	6			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197674127	C	C	197674127	1	2	175	0	1	0	0	0	0	0	0	0	2207	1015	35	4		4	C2orf66	2	197674127	5'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	376065	197674127	45525246	233	142268											
HSPD1	3329	broad.mit.edu	37	chr2	198353668	198353668	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactggggaatactacagaAgcaaaatcattcttggactc	8	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198353668	C	C	198353668	1	2	175	0	1	0	0	0	0	0	0	0	7498	87	3	5		5	HSPD1	2	198353668	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	679541	198353668	44845705	234	142269											
RFTN2	130132	broad.mit.edu	37	chr2	198482528	198482528	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaactgcagctcacctcaAtaacagtccattgttctact	5	12	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198482528	G	G	198482528	3	3	175	1	0	0	0	0	1	0	0	0	13367	101	4	5	475	5	RFTN2	2	198482528	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	128860	198482528	44716845	235	142270											
SATB2	23314	broad.mit.edu	37	chr2	200213973	200213973	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatatatgtagaactgaatTatcatacttttggcatgtta	6	4	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200213973	C	C	200213973	1	2	175	0	1	0	0	0	0	0	0	0	13966	1769	61	5		5	SATB2	2	200213973	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1731445	200213973	42985400	236	142271											
DYTN	391475	broad.mit.edu	37	chr2	207527696	207527696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagttcctcttcctccaGctcatcctttctctccttga	4	16	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207527696	T	T	207527696	3	4	175	1	0	0	0	0	1	0	0	0	4901	962	34	3	180	3	DYTN	2	207527696	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	7313723	207527696	35671677	237	142272											
DYTN	391475	broad.mit.edu	37	chr2	207530513	207530513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgatcaaagtaaggtGggaagctcctcccttggctg	14	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207530513	T	T	207530513	1	4	175	0	1	0	0	0	0	0	0	0	4901	1363	47	2		2	DYTN	2	207530513	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2817	207530513	35668860	238	142273											
FASTKD2	22868	broad.mit.edu	37	chr2	207635937	207635937	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcagcaagtttggaaaataGaagatgtcttcacattacaa	7	6	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207635937	C	C	207635937	3	2	175	1	0	0	0	0	1	0	0	0	5743	943	33	4	923	4	FASTKD2	2	207635937	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	105424	207635937	35563436	239	142274											
PIKFYVE	200576	broad.mit.edu	37	chr2	209141468	209141468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagaacctacctttggaGgtcatgaccctcgtacagct	9	12	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209141468	T	T	209141468	3	4	175	1	0	0	0	0	1	0	0	0	12019	1000	35	2	365	2	PIKFYVE	2	209141468	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1505531	209141468	34057905	240	142275											
GMPPA	29926	broad.mit.edu	37	chr2	220366836	220366836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattcagggtgttggggagGcaggggcgccccgggagttg	21	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220366836	T	T	220366836	1	4	175	0	1	0	0	0	0	0	0	0	6558	1218	42	3		3	GMPPA	2	220366836	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	11225368	220366836	22832537	241	142276											
RHBDD1	84236	broad.mit.edu	37	chr2	227731981	227731981	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attttgggctttcctgtaccGaacagatttgcttgttgggt	11	7	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227731981	A	A	227731981	2	1	175	1	0	0	0	0	0	0	0	1	13425	1045	37	4		4	RHBDD1	2	227731981	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	7365145	227731981	15467392	242	142277											
COL4A4	1286	broad.mit.edu	37	chr2	227964453	227964453	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaggaatattaattttactCatgttgcctggcattaaacc	6	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227964453	A	A	227964453	1	1	175	0	1	0	0	0	0	0	0	0	3725	841	29	3		3	COL4A4	2	227964453	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	232472	227964453	15234920	243	142278											
COL4A4	1286	broad.mit.edu	37	chr2	227973846	227973846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attataatctctcaaacggcCcacctgtgtctgacccaaaa	5	13	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227973846	A	A	227973846	1	1	175	0	1	0	0	0	0	0	0	0	3725	638	22	2		2	COL4A4	2	227973846	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	9393	227973846	15225527	244	142279											
WDR69	164781	broad.mit.edu	37	chr2	228788697	228788697	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgttgactgaaggaagctGgtcagtgagcaaccttgcta	14	8	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228788697	T	T	228788697	1	4	175	0	1	0	0	0	0	0	0	0	17446	1363	47	2		2	WDR69	2	228788697	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	814851	228788697	14410676	245	142280											
TRIP12	9320	broad.mit.edu	37	chr2	230679754	230679754	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgaaagctaaaattcaAgagtttgaaacttgactccc	6	7	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230679754	G	G	230679754	1	3	175	0	1	0	0	0	0	0	0	0	16681	87	3	5		5	TRIP12	2	230679754	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1891057	230679754	12519619	246	142281											
SP140L	93349	broad.mit.edu	37	chr2	231193365	231193365	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatatttctcttttttttgcAcatatgcaagtatttctctt	3	7	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231193365	T	T	231193365	1	4	175	0	1	0	0	0	0	0	0	0	15077	174	6	5		5	SP140L	2	231193365	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	513611	231193365	12006008	247	142282											
ALPPL2	251	broad.mit.edu	37	chr2	233271579	233271579	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatacctgggatttccgccTcgccgctctccgactgcttc	8	18	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233271579	A	A	233271579	1	1	175	0	1	0	0	0	0	0	0	0	549	1566	54	5		5	ALPPL2	2	233271579	5'UTR	SNP	T	TCGA-55-1592-01A-01D-0969-08	2078214	233271579	9927794	248	142283											
ECEL1	9427	broad.mit.edu	37	chr2	233346356	233346356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccctgtgggcagtgcagCaggctgagacccaccctcac	12	17	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233346356	A	A	233346356	1	1	175	0	1	0	0	0	0	0	0	0	4931	725	25	3		3	ECEL1	2	233346356	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	74777	233346356	9853017	249	142284											
GAL3ST2	64090	broad.mit.edu	37	chr2	242741438	242741438	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtgcaaccacctgaggtTcaacctgcctcaggtaccgc	9	15	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242741438	C	C	242741438	3	2	175	1	0	0	0	0	1	0	0	0	6260	1783	62	5	372	5	GAL3ST2	2	242741438	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	9395082	242741438	457935	250	142285											
GAL3ST2	64090	broad.mit.edu	37	chr2	242742789	242742789	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcatgcccaacgacaccttCtacttctccatcctgaggaa	6	15	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242742789	G	G	242742789	3	3	175	1	0	0	0	0	1	0	0	0	6260	912	32	4	419	4	GAL3ST2	2	242742789	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1351	242742789	456584	251	142286											
CNTN6	27255	broad.mit.edu	37	chr3	1427542	1427542	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagcaacctattcctttgCttgatgttcatttcattccc	5	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1427542	T	T	1427542	1	4	175	0	1	0	0	0	0	0	0	0	3677	812	28	4		4	CNTN6	3	1427542	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		1427542	196594888	252	142287											
GRM7	2917	broad.mit.edu	37	chr3	7620536	7620536	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcactttcctgatgattgCcaaaccagatgtggcagtgt	9	10	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7620536	T	T	7620536	3	4	175	1	0	0	0	0	1	0	0	0	6868	739	26	4	1973	4	GRM7	3	7620536	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	6192994	7620536	190401894	253	142288											
SLC6A1	6529	broad.mit.edu	37	chr3	11059650	11059650	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggtatggaagctggctccTatgttcaagggtaagtctgc	15	7	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11059650	A	A	11059650	2	1	175	1	0	0	0	0	0	0	0	1	14787	1509	53	5		5	SLC6A1	3	11059650	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	3439114	11059650	186962780	254	142289											
ATG7	10533	broad.mit.edu	37	chr3	11382132	11382132	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttaagattgtcctaaagcAgttggatgggaaaagaacca	10	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11382132	G	G	11382132	2	3	175	1	0	0	0	0	0	0	0	1	1105	175	7	5		5	ATG7	3	11382132	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	322482	11382132	186640298	255	142290											
CAPN7	23473	broad.mit.edu	37	chr3	15288300	15288300	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accatacaccttatcaaaacGggtgagaaaattcatttggt	7	8	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15288300	C	C	15288300	3	2	175	1	0	0	0	0	1	0	0	0	2657	1130	39	4	2142	4	CAPN7	3	15288300	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3906168	15288300	182734130	256	142291											
ANKRD28	23243	broad.mit.edu	37	chr3	15762737	15762737	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatcaaattactaaagtgAgaaacggagacaagataagt	9	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15762737	C	C	15762737	1	2	175	0	1	0	0	0	0	0	0	0	656	319	11	5		5	ANKRD28	3	15762737	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	474437	15762737	182259693	257	142292											
GALNTL2	117248	broad.mit.edu	37	chr3	16254145	16254145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacacatctaccaaaatcagGattcccattcccccctcgac	4	17	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16254145	T	T	16254145	3	4	175	1	0	0	0	0	1	0	0	0	6284	1174	41	3	1289	3	GALNTL2	3	16254145	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	491408	16254145	181768285	258	142293											
PLCL2	23228	broad.mit.edu	37	chr3	17056430	17056430	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcctttgtccgtttacatAgcctgggtgagagagatatc	11	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17056430	T	T	17056430	1	4	175	0	1	0	0	0	0	0	0	0	12135	435	15	5		5	PLCL2	3	17056430	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	802285	17056430	180966000	259	142294											
KCNH8	131096	broad.mit.edu	37	chr3	19384041	19384041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcttgaggtgaaatgatGcatgcatgtgtgtctaatga	11	5	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19384041	T	T	19384041	1	4	175	0	1	0	0	0	0	0	0	0	8108	1334	46	3		3	KCNH8	3	19384041	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2327611	19384041	178638389	260	142295											
KCNH8	131096	broad.mit.edu	37	chr3	19432278	19432278	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccagtgatatgcaggccaGattcttcagttgatgaagtt	11	8	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19432278	T	T	19432278	1	4	175	0	1	0	0	0	0	0	0	0	8108	957	33	3		3	KCNH8	3	19432278	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	48237	19432278	178590152	261	142296											
ZNF385D	79750	broad.mit.edu	37	chr3	21792502	21792502	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctttcatgctacattcgGtggaaatgtccccggcgtgg	12	12	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21792502	C	C	21792502	1	2	175	0	1	0	0	0	0	0	0	0	18004	1276	44	4		4	ZNF385D	3	21792502	5'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	2360224	21792502	176229928	262	142297											
NEK10	152110	broad.mit.edu	37	chr3	27244069	27244069	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagtaaaataaggacatTaatacatgctaaggaaggga	10	4	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27244069	G	G	27244069	1	3	175	0	1	0	0	0	0	0	0	0	10417	1769	61	5		5	NEK10	3	27244069	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	5451567	27244069	170778361	263	142298											
SLC4A7	9497	broad.mit.edu	37	chr3	27490147	27490147	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgttttctcttaccataaGaaggagattcccgtccatct	6	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27490147	C	C	27490147	3	2	175	1	0	0	0	0	1	0	0	0	14772	942	33	4	3479	4	SLC4A7	3	27490147	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	246078	27490147	170532283	264	142299											
EOMES	8320	broad.mit.edu	37	chr3	27760634	27760634	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctaaattcccaaaatacttCgctatttctgttcttaatag	3	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27760634	G	G	27760634	1	3	175	0	1	0	0	0	0	0	0	0	5189	899	31	4		4	EOMES	3	27760634	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	270487	27760634	170261796	265	142300											
AZI2	64343	broad.mit.edu	37	chr3	28378139	28378139	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataattacaatttattttaActctatggtttaatacaatc	2	5	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28378139	C	C	28378139	1	2	175	0	1	0	0	0	0	0	0	0	1246	58	2	5		5	AZI2	3	28378139	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	617505	28378139	169644291	266	142301											
ARPP21	10777	broad.mit.edu	37	chr3	35729467	35729467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacatgcatattcacctccCaccaaaccctgcatatgatt	3	15	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35729467	A	A	35729467	1	1	175	0	1	0	0	0	0	0	0	0	982	609	21	2		2	ARPP21	3	35729467	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	7351328	35729467	162292963	267	142302											
MLH1	4292	broad.mit.edu	37	chr3	37053623	37053623	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctatataaaaaaatcttttAcatttattatcttggtttat	2	5	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37053623	G	G	37053623	1	3	175	0	1	0	0	0	0	0	0	0	9710	406	14	5		5	MLH1	3	37053623	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1324156	37053623	160968807	268	142303											
SCN10A	6336	broad.mit.edu	37	chr3	38743164	38743164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcactgagagagcagccCaaggcatttaaaacttgcta	8	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38743164	A	A	38743164	1	1	175	0	1	0	0	0	0	0	0	0	14025	609	21	2		2	SCN10A	3	38743164	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1689541	38743164	159279266	269	142304											
SCN10A	6336	broad.mit.edu	37	chr3	38755306	38755306	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgtacttttagcagagAcagggtttcggcatgttggc	12	6	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38755306	G	G	38755306	1	3	175	0	1	0	0	0	0	0	0	0	14025	290	10	5		5	SCN10A	3	38755306	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	12142	38755306	159267124	270	142305											
TTC21A	199223	broad.mit.edu	37	chr3	39178787	39178787	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagccagacccagctgcGgctgctgcagggcctctgcc	12	18	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39178787	T	T	39178787	3	4	175	1	0	0	0	0	1	0	0	0	16813	1116	39	1	3481	1	TTC21A	3	39178787	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	423481	39178787	158843643	271	142306											
CCK	885	broad.mit.edu	37	chr3	42299485	42299485	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaataaatagatacatacaAtgtcaaactccacagacaat	3	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42299485	G	G	42299485	1	3	175	0	1	0	0	0	0	0	0	0	2907	116	4	5		5	CCK	3	42299485	3'UTR	SNP	A	TCGA-55-1592-01A-01D-0969-08	3120698	42299485	155722945	272	142307											
ALS2CL	259173	broad.mit.edu	37	chr3	46718332	46718332	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcatgctcacacagccgGcctcacctctcgcaggacag	10	16	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46718332	A	A	46718332	1	1	175	0	1	0	0	0	0	0	0	0	551	1218	42	4		4	ALS2CL	3	46718332	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4418847	46718332	151304098	273	142308											
SMARCC1	6599	broad.mit.edu	37	chr3	47632111	47632111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctacagccctccagaaCggaccctgagataatgcatc	7	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47632111	A	A	47632111	1	1	175	0	1	0	0	0	0	0	0	0	14889	551	19	3		3	SMARCC1	3	47632111	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	913779	47632111	150390319	274	142309											
CDC25A	993	broad.mit.edu	37	chr3	48207217	48207217	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaacttgccattcaaaacaGatgccatctgttgagagaaa	7	9	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48207217	C	C	48207217	3	2	175	1	0	0	0	0	1	0	0	0	3092	942	33	4	490	4	CDC25A	3	48207217	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	575106	48207217	149815213	275	142310											
RBM5	10181	broad.mit.edu	37	chr3	50137833	50137833	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatcaagaagatccccaagtCaagtcacatttgtaaagctg	7	9	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50137833	G	G	50137833	1	3	175	0	1	0	0	0	0	0	0	0	13251	841	29	4		4	RBM5	3	50137833	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1930616	50137833	147884597	276	142311											
ZMYND10	51364	broad.mit.edu	37	chr3	50380531	50380531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccacagtaggcccaggCccagtcggactgctcacctg	10	18	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50380531	A	A	50380531	1	1	175	0	1	0	0	0	0	0	0	0	17831	754	26	3		3	ZMYND10	3	50380531	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	242698	50380531	147641899	277	142312											
DNAH1	25981	broad.mit.edu	37	chr3	52428846	52428846	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatagcccactctcccCagctgtccggctggccgaat	11	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52428846	T	T	52428846	1	4	175	0	1	0	0	0	0	0	0	0	4637	609	21	4		4	DNAH1	3	52428846	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2048315	52428846	145593584	278	142313											
PTPRG	5793	broad.mit.edu	37	chr3	62278399	62278399	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagatggatggcatctagagGatacaagccagagatgctgc	13	8	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62278399	T	T	62278399	1	4	175	0	1	0	0	0	0	0	0	0	12910	1189	41	3		3	PTPRG	3	62278399	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	9849553	62278399	135744031	279	142314											
CNTN3	5067	broad.mit.edu	37	chr3	74334437	74334437	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattttccgtaccattcaaaGaaatcagaatatacttacgc	4	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74334437	A	A	74334437	1	1	175	0	1	0	0	0	0	0	0	0	3674	957	33	4		4	CNTN3	3	74334437	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	12056038	74334437	123687993	280	142315											
ROBO2	6092	broad.mit.edu	37	chr3	77600017	77600017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccaacagtagatgctcaGtgtcaccaactggagacctc	9	13	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77600017	T	T	77600017	3	4	175	1	0	0	0	0	1	0	0	0	13625	1029	36	3	1140	3	ROBO2	3	77600017	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3265580	77600017	120422413	281	142316											
HTR1F	3355	broad.mit.edu	37	chr3	88040798	88040798	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccctgggattaatcttggGtgcatttgtaatatgttggc	11	6	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88040798	A	A	88040798	3	1	175	1	0	0	0	0	1	0	0	0	7510	1261	44	4	901	4	HTR1F	3	88040798	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	10440781	88040798	109981632	282	142317											
EPHA6	285220	broad.mit.edu	37	chr3	97439074	97439074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttaatacaacgataagCcagctaagaaatctccaatt	5	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97439074	A	A	97439074	1	1	175	0	1	0	0	0	0	0	0	0	5213	754	26	3		3	EPHA6	3	97439074	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	9398276	97439074	100583356	283	142318											
FILIP1L	11259	broad.mit.edu	37	chr3	99552027	99552027	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataaatgcttaacccagttCaacatgaagactgggatttg	8	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99552027	T	T	99552027	1	4	175	0	1	0	0	0	0	0	0	0	5952	841	29	4		4	FILIP1L	3	99552027	3'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	2112953	99552027	98470403	284	142319											
IMPG2	50939	broad.mit.edu	37	chr3	100951486	100951486	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatcctcacatgacagttaGatggctcccatctattgcct	6	13	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100951486	A	A	100951486	1	1	175	0	1	0	0	0	0	0	0	0	7799	957	33	4		4	IMPG2	3	100951486	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1399459	100951486	97070944	285	142320											
MYH15	22989	broad.mit.edu	37	chr3	108219032	108219032	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggggagcctctgatcgcctCttccctttgtaggcggccat	13	13	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108219032	G	G	108219032	3	3	175	1	0	0	0	0	1	0	0	0	10128	912	32	4	5503	4	MYH15	3	108219032	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	7267546	108219032	89803398	286	142321											
DZIP3	9666	broad.mit.edu	37	chr3	108396542	108396542	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtatgtttaacgtgtgttCaaaatggaataggcacatat	9	5	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108396542	G	G	108396542	1	3	175	0	1	0	0	0	0	0	0	0	4905	841	29	4		4	DZIP3	3	108396542	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	177510	108396542	89625888	287	142322											
DRD3	1814	broad.mit.edu	37	chr3	113858287	113858287	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatcatgcactgctggacaCaggctgggaagtcaggagat	13	8	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113858287	T	T	113858287	1	4	175	0	1	0	0	0	0	0	0	0	4798	493	17	4		4	DRD3	3	113858287	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5461745	113858287	84164143	288	142323											
ZNF80	7634	broad.mit.edu	37	chr3	113955524	113955524	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacactcgctgcactcaTagggcttctctccagtgtga	8	14	2	1	rs143330045		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113955524	C	C	113955524	3	2	175	1	0	0	0	0	1	0	0	0	18297	1406	49	5	427	5	ZNF80	3	113955524	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	97237	113955524	84066906	289	142324											
ZBTB20	26137	broad.mit.edu	37	chr3	114057870	114057870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttatccgtcagacacatgCatcctcatgtggtcgttgaa	8	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114057870	A	A	114057870	3	1	175	1	0	0	0	0	1	0	0	0	17655	710	25	3	21	3	ZBTB20	3	114057870	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	102346	114057870	83964560	290	142325											
TMEM39A	55254	broad.mit.edu	37	chr3	119155826	119155826	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtcatagtactgggtactCtggaagagatcagaagagag	13	5	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119155826	G	G	119155826	5	3	175	1	0	0	0	0	0	0	1	0	16284	927	32	4	554	4	TMEM39A	3	119155826	Splice_Site	SNP	C	TCGA-55-1592-01A-01D-0969-08	5097956	119155826	78866604	291	142326											
ILDR1	286676	broad.mit.edu	37	chr3	121712504	121712504	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtggcttctcccctccctCagatcccagggcctggaggg	13	15	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121712504	A	A	121712504	2	1	175	1	0	0	0	0	0	0	0	1	7779	813	29	3		3	ILDR1	3	121712504	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2556678	121712504	76309926	292	142327											
HEG1	57493	broad.mit.edu	37	chr3	124739860	124739860	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactgaccgtcaaagatcgcAgcgttctcgggccaccatca	10	14	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124739860	T	T	124739860	3	4	175	1	0	0	0	0	1	0	0	0	7111	188	7	5	3173	5	HEG1	3	124739860	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	3027356	124739860	73282570	293	142328											
PLXNA1	5361	broad.mit.edu	37	chr3	126726845	126726845	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgtcgcctgaggcctgGcccagggagcacctgtggat	17	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126726845	A	A	126726845	1	1	175	0	1	0	0	0	0	0	0	0	12214	1218	42	4		4	PLXNA1	3	126726845	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1986985	126726845	71295585	294	142329											
COL6A6	131873	broad.mit.edu	37	chr3	130285632	130285633	+	Frame_Shift_Ins	INS	-	C	C													agatttccatgaaatgaagaINScgttcctgtcagaggtggta							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130285633	C	C	130285632	7	5	175	1	0	1	1	0	0	0	0	0	3735	275	10	0	1383	0	COL6A6	3	130285632	Frame_Shift_Ins	INS	-	TCGA-55-1592-01A-01D-0969-08	3558787	130285632	67736798	295	142330											
COL6A6	131873	broad.mit.edu	37	chr3	130287011	130287011	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtgagcaagtctcagattgGaccagatcgggtgcaaattg	14	7	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130287011	C	C	130287011	3	2	175	1	0	0	0	0	1	0	0	0	3735	1174	41	4	1982	4	COL6A6	3	130287011	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1379	130287011	67735419	296	142331											
NEK11	79858	broad.mit.edu	37	chr3	130889527	130889527	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtaggcttgtttccaagTagtcttctaaataagaatat	8	5	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130889527	C	C	130889527	1	2	175	0	1	0	0	0	0	0	0	0	10418	1653	57	5		5	NEK11	3	130889527	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	602516	130889527	67132903	297	142332											
MRPL3	11222	broad.mit.edu	37	chr3	131216895	131216895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgccagactgcctcccCcaaatacacaatttacctca	5	16	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131216895	T	T	131216895	1	4	175	0	1	0	0	0	0	0	0	0	9887	638	22	4		4	MRPL3	3	131216895	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	327368	131216895	66805535	298	142333											
ACPP	55	broad.mit.edu	37	chr3	132036133	132036133	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctcagctcaaaatttacaTgacattatttacataccaaa	2	10	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132036133	C	C	132036133	1	2	175	0	1	0	0	0	0	0	0	0	167	1479	51	5		5	ACPP	3	132036133	5'Flank	SNP	T	TCGA-55-1592-01A-01D-0969-08	819238	132036133	65986297	299	142334											
STAG1	10274	broad.mit.edu	37	chr3	136341849	136341850	+	Intron	INS	-	A	A													ctgccaagacaatttatgtgINSaaaaaaagtttccaatctct							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136341850	A	A	136341849	6	5	175	0	1	1	1	0	0	0	0	0	15360	1305	45	0		0	STAG1	3	136341849	Intron	INS	-	TCGA-55-1592-01A-01D-0969-08	4305716	136341849	61680581	300	142335											
PIK3CB	5291	broad.mit.edu	37	chr3	138375084	138375084	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattcccatgccgtcgtaaaAtcagatatgcatcctcacaa	6	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138375084	G	G	138375084	3	3	175	1	0	0	0	0	1	0	0	0	12009	101	4	5	243	5	PIK3CB	3	138375084	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2033235	138375084	59647346	301	142336											
CLSTN2	64084	broad.mit.edu	37	chr3	140277665	140277665	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagattgtgagcaccttcgcCaaaaccgaagcccccgggga	11	13	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140277665	T	T	140277665	2	4	175	1	0	0	0	0	0	0	0	1	3594	581	21	4		4	CLSTN2	3	140277665	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1902581	140277665	57744765	302	142337											
CLSTN2	64084	broad.mit.edu	37	chr3	140281113	140281113	+	Frame_Shift_Del	DEL	G	-	-													gagctccaccaacgacacctGgatgccactaattctactgc							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140281113	-	-	140281113	7	5	175	1	0	1	0	1	0	0	0	0	3594	1335	47	0	2225	0	CLSTN2	3	140281113	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	3448	140281113	57741317	303	142338											
ZIC4	84107	broad.mit.edu	37	chr3	147108713	147108713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcccaagccctgacacaCgtaccattcgctcaagtcgg	11	15	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147108713	A	A	147108713	1	1	175	0	1	0	0	0	0	0	0	0	17807	551	19	3		3	ZIC4	3	147108713	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	6827600	147108713	50913717	304	142339			1	111		3	3	275	N	G_C	5.479136e-05
ZIC4	84107	broad.mit.edu	37	chr3	147108910	147108910	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcgtgtagcacttgtcgCagccccgcaccttgcacgtg	13	14	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147108910	T	T	147108910	3	4	175	1	0	0	0	0	1	0	0	0	17807	710	25	4	200	4	ZIC4	3	147108910	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	197	147108910	50913520	305	142340			1	111		3	3	275	N	G_C	5.479136e-05
ZIC4	84107	broad.mit.edu	37	chr3	147108987	147108987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttacggtcgctgctgttggcGaagcgccgctcgcagccctc	13	15	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147108987	T	T	147108987	3	4	175	1	0	0	0	0	1	0	0	0	17807	1049	37	3	277	3	ZIC4	3	147108987	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	77	147108987	50913443	306	142341			1	111		3	3	275	N	G_C	5.479136e-05
AGTR1	185	broad.mit.edu	37	chr3	148459426	148459426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctgaccaaaaatataCtgggtttcctgtttcctttt	8	9	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148459426	A	A	148459426	3	1	175	1	0	0	0	0	1	0	0	0	401	564	20	3	606	3	AGTR1	3	148459426	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1350439	148459426	49563004	307	142342											
COMMD2	51122	broad.mit.edu	37	chr3	149470067	149470068	+	Frame_Shift_Ins	INS	-	A	A													cagcaatccgcccaaactcgINSgcgaccactgcaatgaaagt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149470068	A	A	149470067	7	5	175	1	0	1	1	0	0	0	0	0	3748	1103	39	0	540	0	COMMD2	3	149470067	Frame_Shift_Ins	INS	-	TCGA-55-1592-01A-01D-0969-08	1010641	149470067	48552363	308	142343											
IGSF10	285313	broad.mit.edu	37	chr3	151174593	151174593	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggtattgattttttttctAttagcttgaggtagtagaaa	10	2	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151174593	G	G	151174593	1	3	175	0	1	0	0	0	0	0	0	0	7667	464	16	5		5	IGSF10	3	151174593	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1704526	151174593	46847837	309	142344											
MME	4311	broad.mit.edu	37	chr3	154878336	154878336	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacctctaaacaagcacagcTgaggctgagttattgctcta	8	10	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154878336	A	A	154878336	1	1	175	0	1	0	0	0	0	0	0	0	9738	1595	55	5		5	MME	3	154878336	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	3703743	154878336	43144094	310	142345											
SI	6476	broad.mit.edu	37	chr3	164712076	164712076	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcggataacagtgccacCattagcatgaatttcatgca	10	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164712076	T	T	164712076	3	4	175	1	0	0	0	0	1	0	0	0	14410	594	21	4	705	4	SI	3	164712076	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	9833740	164712076	33310354	311	142346											
SI	6476	broad.mit.edu	37	chr3	164733519	164733519	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaacagcttccctttaactCagctttggttttaaatctct	4	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164733519	A	A	164733519	1	1	175	0	1	0	0	0	0	0	0	0	14410	841	29	3		3	SI	3	164733519	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	21443	164733519	33288911	312	142347											
ZBBX	79740	broad.mit.edu	37	chr3	167078466	167078466	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgataaattatttaccttGaatctgttccttcagcaatt	6	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167078466	T	T	167078466	3	4	175	1	0	0	0	0	1	0	0	0	17643	1299	45	3	2143	3	ZBBX	3	167078466	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2344947	167078466	30943964	313	142348											
WDR49	151790	broad.mit.edu	37	chr3	167240287	167240287	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcctgaaaaaaacgaaAacatctgttttatttttatg	5	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167240287	G	G	167240287	1	3	175	0	1	0	0	0	0	0	0	0	17429	29	1	5		5	WDR49	3	167240287	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	161821	167240287	30782143	314	142349											
SEC62	7095	broad.mit.edu	37	chr3	169693437	169693437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagaaggctgtggccaaGtatcttcgattcaactgtcc	11	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169693437	T	T	169693437	3	4	175	1	0	0	0	0	1	0	0	0	14117	1020	36	3	84	3	SEC62	3	169693437	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2453150	169693437	28328993	315	142350											
SLC7A14	57709	broad.mit.edu	37	chr3	170216672	170216672	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtatgattcttcacctttCcctagagaggaaagacatga	10	8	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170216672	A	A	170216672	2	1	175	1	0	0	0	0	0	0	0	1	14810	869	30	3		3	SLC7A14	3	170216672	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	523235	170216672	27805758	316	142351											
TNIK	23043	broad.mit.edu	37	chr3	170858355	170858355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccggtggggggtgtcaGggagccagcaggaaaagctg	20	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170858355	T	T	170858355	1	4	175	0	1	0	0	0	0	0	0	0	16436	1015	35	2		2	TNIK	3	170858355	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	641683	170858355	27164075	317	142352											
NAALADL2	254827	broad.mit.edu	37	chr3	175294006	175294006	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaaaatgcaaaacacacAcacacaatatagtagacctg	4	10	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175294006	G	G	175294006	1	3	175	0	1	0	0	0	0	0	0	0	10224	174	6	5		5	NAALADL2	3	175294006	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4435651	175294006	22728424	318	142353											
YEATS2	55689	broad.mit.edu	37	chr3	183474581	183474581	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taattggagaatgaaatctcCcgtaaacgagaagcgagaat	10	6	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183474581	T	T	183474581	1	4	175	0	1	0	0	0	0	0	0	0	17599	638	22	4		4	YEATS2	3	183474581	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	8180575	183474581	14547849	319	142354											
MAP3K13	9175	broad.mit.edu	37	chr3	185135164	185135164	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataatcaaaacactgataTatgttcttttcttttctttt	2	6	4	1	rs148526119	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185135164	A	A	185135164	1	1	175	0	1	0	0	0	0	0	0	0	9339	1421	49	5		5	MAP3K13	3	185135164	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1660583	185135164	12887266	320	142355											
DNAJB11	51726	broad.mit.edu	37	chr3	186299101	186299101	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagagccttgatcaattgAggaaaggaaaggctgtttta	12	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186299101	T	T	186299101	1	4	175	0	1	0	0	0	0	0	0	0	4656	319	11	5		5	DNAJB11	3	186299101	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1163937	186299101	11723329	321	142356											
HRG	3273	broad.mit.edu	37	chr3	186395193	186395193	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccccatggacaccatcccCatgcacaccatcctcatgaa	4	18	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186395193	T	T	186395193	3	4	175	1	0	0	0	0	1	0	0	0	7421	594	21	4	1125	4	HRG	3	186395193	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	96092	186395193	11627237	322	142357											
MASP1	5648	broad.mit.edu	37	chr3	186954049	186954049	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtggagcaccactcggGcagctgagctgttgactgcc	15	12	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186954049	C	C	186954049	1	2	175	0	1	0	0	0	0	0	0	0	9414	1203	42	4		4	MASP1	3	186954049	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	558856	186954049	11068381	323	142358											
LPP	4026	broad.mit.edu	37	chr3	188202445	188202445	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttccatctatctctggaAactttcctcctccaccacct	2	19	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188202445	T	T	188202445	3	4	175	1	0	0	0	0	1	0	0	0	9010	14	1	5	265	5	LPP	3	188202445	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1248396	188202445	9819985	324	142359											
FGFRL1	53834	broad.mit.edu	37	chr4	1006103	1006103	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtctgcctttgatacccAcagcttctccccgctgcggc	8	16	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1006103	T	T	1006103	1	4	175	0	1	0	0	0	0	0	0	0	5926	174	6	5		5	FGFRL1	4	1006103	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08		1006103	190148173	325	142360											
POLN	353497	broad.mit.edu	37	chr4	2177888	2177888	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatttgttcttagaactcaAcgtttcgtttccttcacatt	4	9	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2177888	G	G	2177888	1	3	175	0	1	0	0	0	0	0	0	0	12302	58	2	5		5	POLN	4	2177888	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1171785	2177888	188976388	326	142361											
ZFYVE28	57732	broad.mit.edu	37	chr4	2307157	2307157	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcaggcgccagggcagCgggtccctgcacgtctgcgc	18	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2307157	T	T	2307157	3	4	175	1	0	0	0	0	1	0	0	0	17796	768	27	4	1777	4	ZFYVE28	4	2307157	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	129269	2307157	188847119	327	142362											
MSX1	4487	broad.mit.edu	37	chr4	4864774	4864774	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgggtgcctcgctctaCggtgcctctggccccttcca	13	17	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4864774	A	A	4864774	4	1	175	1	0	0	0	0	0	1	0	0	9989	547	19	3	822	3	MSX1	4	4864774	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2557617	4864774	186289502	328	142363											
WFS1	7466	broad.mit.edu	37	chr4	6303098	6303099	+	Missense_Mutation	DNP	GG	TT	TT													cacagctgaggaatttcaagGgcacctactgctaccttgtg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6303099	TT	TT	6303098	3	4	175	1	0	0	0	0	1	0	0	0	17487	1232	43	2	1602	2	WFS1	4	6303098	Missense_Mutation	DNP	GG	TCGA-55-1592-01A-01D-0969-08	1438324	6303098	184851178	329	142364											
SLC34A2	10568	broad.mit.edu	37	chr4	25677973	25677973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggtgctggttggtgtcGgggttcccgtcgtcttcatc	17	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25677973	T	T	25677973	3	4	175	1	0	0	0	0	1	0	0	0	14682	1116	39	1	1721	1	SLC34A2	4	25677973	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	19374875	25677973	165476303	330	142365											
LIMCH1	22998	broad.mit.edu	37	chr4	41687737	41687737	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggcctcagatccatcccaGaatcagcagacatcaaatcc	6	14	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41687737	C	C	41687737	3	2	175	1	0	0	0	0	1	0	0	0	8869	933	33	4	2944	4	LIMCH1	4	41687737	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	16009764	41687737	149466539	331	142366											
YIPF7	285525	broad.mit.edu	37	chr4	44624661	44624661	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttattgagttaaagttgcctCtgaaatatccttggcacaat	7	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44624661	A	A	44624661	1	1	175	0	1	0	0	0	0	0	0	0	17610	928	32	3		3	YIPF7	4	44624661	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2936924	44624661	146529615	332	142367											
GNPDA2	132789	broad.mit.edu	37	chr4	44713078	44713078	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaagatggtatccattgcTagagtctttaatcttgtcct	8	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44713078	C	C	44713078	2	2	175	1	0	0	0	0	0	0	0	1	6607	1509	53	5		5	GNPDA2	4	44713078	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	88417	44713078	146441198	333	142368											
SPATA18	132671	broad.mit.edu	37	chr4	52943162	52943162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctgctgcggcgctgcatcGacaaggctgagaccgttcag	14	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52943162	T	T	52943162	3	4	175	1	0	0	0	0	1	0	0	0	15119	1058	37	3	1002	3	SPATA18	4	52943162	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	8230084	52943162	138211114	334	142369											
KIAA1211	57482	broad.mit.edu	37	chr4	57181273	57181273	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagacagaccatgccccgGccctacacgttccaggtgtc	11	15	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57181273	T	T	57181273	2	4	175	1	0	0	0	0	0	0	0	1	8285	1190	42	3		3	KIAA1211	4	57181273	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	4238111	57181273	133973003	335	142370											
EPHA5	2044	broad.mit.edu	37	chr4	66439744	66439745	+	Intron	DEL	AC	-	-													atcgagttcctctatgaagaAcacaccagaaatttgtcatt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66439745	-	-	66439744	6	5	175	0	1	1	0	1	0	0	0	0	5212	58	2	0		0	EPHA5	4	66439744	Intron	DEL	AC	TCGA-55-1592-01A-01D-0969-08	9258471	66439744	124714532	336	142371											
STAP1	26228	broad.mit.edu	37	chr4	68437019	68437019	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagtttaaatctgtgggggCcgccaatgatcacaggaacg	12	8	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68437019	G	G	68437019	1	3	175	0	1	0	0	0	0	0	0	0	15370	754	26	4		4	STAP1	4	68437019	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1997275	68437019	122717257	337	142372											
MUC7	4589	broad.mit.edu	37	chr4	71346890	71346890	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaccatatcttcaagagaAaatgttaacacaagctcttc	4	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71346890	C	C	71346890	3	2	175	1	0	0	0	0	1	0	0	0	10075	11	1	5	435	5	MUC7	4	71346890	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2909871	71346890	119807386	338	142373											
SLC4A4	8671	broad.mit.edu	37	chr4	72319075	72319075	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatagttttctggtttcatCgtaagtggttaagtagtatc	9	4	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72319075	T	T	72319075	1	4	175	0	1	0	0	0	0	0	0	0	14770	899	31	4		4	SLC4A4	4	72319075	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	972185	72319075	118835201	339	142374											
SLC4A4	8671	broad.mit.edu	37	chr4	72420934	72420934	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggtgtgcaggtaagtttTtgaatagcaatgtaagtaca	11	3	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72420934	A	A	72420934	1	1	175	0	1	0	0	0	0	0	0	0	14770	1856	64	5		5	SLC4A4	4	72420934	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	101859	72420934	118733342	340	142375											
ADAMTS3	9508	broad.mit.edu	37	chr4	73149304	73149304	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtatggtggtggcaggGtgctactgcgcttgctgcag	18	7	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73149304	A	A	73149304	3	1	175	1	0	0	0	0	1	0	0	0	267	1261	44	4	454	4	ADAMTS3	4	73149304	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	728370	73149304	118004972	341	142376											
SDAD1	55153	broad.mit.edu	37	chr4	76895164	76895164	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgctgagtgatgctttctTctaactgcatgcagaagcag	10	8	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76895164	G	G	76895164	1	3	175	0	1	0	0	0	0	0	0	0	14063	1798	62	5		5	SDAD1	4	76895164	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	3745860	76895164	114259112	342	142377											
CXCL9	4283	broad.mit.edu	37	chr4	76927399	76927399	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttggtgctgatgcaggaAcagcgaccctttctcactac	11	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76927399	T	T	76927399	4	4	175	1	0	0	0	0	0	1	0	0	4122	41	2	5	296	5	CXCL9	4	76927399	Nonsense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	32235	76927399	114226877	343	142378											
FRAS1	80144	broad.mit.edu	37	chr4	79360270	79360270	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactatagagagctggaatcCgtagtaatgtaaatgaagga	11	4	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79360270	G	G	79360270	1	3	175	0	1	0	0	0	0	0	0	0	6102	667	23	4		4	FRAS1	4	79360270	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2432871	79360270	111794006	344	142379											
FRAS1	80144	broad.mit.edu	37	chr4	79455558	79455558	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcaaatgacatatgcaaaGctgaccctgctctcaaagag	7	11	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79455558	C	C	79455558	1	2	175	0	1	0	0	0	0	0	0	0	6102	986	34	4		4	FRAS1	4	79455558	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	95288	79455558	111698718	345	142380											
HELQ	113510	broad.mit.edu	37	chr4	84376684	84376698	+	In_Frame_Del	DEL	TTTTCCGCCTCCTGT	-	-													aaccggcagtacgcccgcggTtttccgcctcctgttctcag					rs150006112	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84376698	-	-	84376684	7	5	175	1	0	1	0	1	0	0	0	0	7114	1725	60	0	3214	0	HELQ	4	84376684	In_Frame_Del	DEL	TTTTCCGCCTCCTGT	TCGA-55-1592-01A-01D-0969-08	4921126	84376684	106777592	346	142381											
FAM175A	84142	broad.mit.edu	37	chr4	84390093	84390093	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgagtaatggattaattttCccttgaatttttattctgct	6	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84390093	A	A	84390093	1	1	175	0	1	0	0	0	0	0	0	0	5542	870	30	3		3	FAM175A	4	84390093	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	13409	84390093	106764183	347	142382											
ARHGAP24	83478	broad.mit.edu	37	chr4	86915608	86915608	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgctattatcatagttaAgaatatggtttggtactgat	8	3	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86915608	T	T	86915608	1	4	175	0	1	0	0	0	0	0	0	0	875	87	3	5		5	ARHGAP24	4	86915608	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2525515	86915608	104238668	348	142383											
DSPP	1834	broad.mit.edu	37	chr4	88533354	88533354	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtacaggtataggatgtaaTatatttcattttatttccta	6	4	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88533354	C	C	88533354	1	2	175	0	1	0	0	0	0	0	0	0	4822	1421	49	5		5	DSPP	4	88533354	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1617746	88533354	102620922	349	142384											
DSPP	1834	broad.mit.edu	37	chr4	88534203	88534203	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaggaccatgggaaagaaGatgatcatgatagtagcata	12	6	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88534203	T	T	88534203	3	4	175	1	0	0	0	0	1	0	0	0	4822	942	33	3	875	3	DSPP	4	88534203	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	849	88534203	102620073	350	142385											
FAM190A	401145	broad.mit.edu	37	chr4	91230336	91230336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagatgtccctcaattctGctgctgttacaaagacaaca	6	12	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91230336	T	T	91230336	3	4	175	1	0	0	0	0	1	0	0	0	5568	1319	46	3	903	3	FAM190A	4	91230336	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2696133	91230336	99923940	351	142386											
MTTP	4547	broad.mit.edu	37	chr4	100510936	100510936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatattaataaggattcagCatctcaataaaatttgtaag	5	5	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100510936	A	A	100510936	1	1	175	0	1	0	0	0	0	0	0	0	10058	725	25	3		3	MTTP	4	100510936	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	9280600	100510936	90643340	352	142387											
EMCN	51705	broad.mit.edu	37	chr4	101344211	101344211	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggttgctgaagtgcttgCattttttccaccctcagtgc	10	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101344211	T	T	101344211	3	4	175	1	0	0	0	0	1	0	0	0	5128	710	25	4	270	4	EMCN	4	101344211	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	833275	101344211	89810065	353	142388											
UBE2D3	7323	broad.mit.edu	37	chr4	103718493	103718493	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtctgataggggagcagccgGataagaaaatcaaaaaagga	13	5	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103718493	A	A	103718493	1	1	175	0	1	0	0	0	0	0	0	0	16976	1189	41	4		4	UBE2D3	4	103718493	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	2374282	103718493	87435783	354	142389											
NHEDC1	150159	broad.mit.edu	37	chr4	103866543	103866543	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaaaattattttaacaaAtgtcaaactataaagtcttt	3	5	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103866543	G	G	103866543	1	3	175	0	1	0	0	0	0	0	0	0	10495	116	4	5		5	NHEDC1	4	103866543	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	148050	103866543	87287733	355	142390											
NHEDC2	133308	broad.mit.edu	37	chr4	103949926	103949926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactgtggcctttggaagcCatgcaaaagaaataaatatc	9	7	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103949926	A	A	103949926	3	1	175	1	0	0	0	0	1	0	0	0	10496	595	21	2	251	2	NHEDC2	4	103949926	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	83383	103949926	87204350	356	142391											
DKK2	27123	broad.mit.edu	37	chr4	107844969	107844969	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagttcatgttttctttcTccctttttgtgatcatctat	4	9	6	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107844969	A	A	107844969	1	1	175	0	1	0	0	0	0	0	0	0	4585	1566	54	5		5	DKK2	4	107844969	3'UTR	SNP	T	TCGA-55-1592-01A-01D-0969-08	3895043	107844969	83309307	357	142392											
DKK2	27123	broad.mit.edu	37	chr4	107845748	107845748	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttcctagattctgccaTcccaagtcatggtttgagta	9	10	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107845748	A	A	107845748	2	1	175	1	0	0	0	0	0	0	0	1	4585	1422	50	5		5	DKK2	4	107845748	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	779	107845748	83308528	358	142393											
LEF1	51176	broad.mit.edu	37	chr4	109088767	109088767	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcaccaaggaagacttgaTgtcagctaaatcgccttcct	8	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109088767	C	C	109088767	3	2	175	1	0	0	0	0	1	0	0	0	8786	1464	51	5	1183	5	LEF1	4	109088767	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	1243019	109088767	82065509	359	142394											
AGXT2L1	64850	broad.mit.edu	37	chr4	109664882	109664883	+	Intron	DNP	CC	AA	AA													attttttgaaaatttgtattCcttttttaaacattccccaa							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	109664883	AA	AA	109664882	1	1	175	0	1	0	0	0	0	0	0	0	406	870	30	3		3	AGXT2L1	4	109664882	Intron	DNP	CC	TCGA-55-1592-01A-01D-0969-08	576115	109664882	81489394	360	142395											
AGXT2L1	64850	broad.mit.edu	37	chr4	109667832	109667832	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaaactttcctttttcagaGggatgggaggaagtcaagca	11	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109667832	C	C	109667832	1	2	175	0	1	0	0	0	0	0	0	0	406	1015	35	4		4	AGXT2L1	4	109667832	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2950	109667832	81486444	361	142396											
ENPEP	2028	broad.mit.edu	37	chr4	111436540	111436540	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atccccattgtagggatcttCtattttgagaatgcttgaag	9	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111436540	T	T	111436540	3	4	175	1	0	0	0	0	1	0	0	0	5170	913	32	4	1481	4	ENPEP	4	111436540	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1768708	111436540	79717736	362	142397											
NDST4	64579	broad.mit.edu	37	chr4	115856586	115856586	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgcaaattgtaatttccTattggattttcttggttgct	7	6	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115856586	C	C	115856586	1	2	175	0	1	0	0	0	0	0	0	0	10353	1537	53	5		5	NDST4	4	115856586	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	4420046	115856586	75297690	363	142398											
NDST4	64579	broad.mit.edu	37	chr4	116030110	116030110	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatggaaataaaggaaggaGggaaaaagggaggaagaaag	17	0	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116030110	A	A	116030110	1	1	175	0	1	0	0	0	0	0	0	0	10353	1015	35	4		4	NDST4	4	116030110	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	173524	116030110	75124166	364	142399											
KIAA1109	84162	broad.mit.edu	37	chr4	123165092	123165092	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtggaccctggatcaacCagtgtcccagaccaggacaa	11	12	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123165092	T	T	123165092	3	4	175	1	0	0	0	0	1	0	0	0	8278	594	21	4	4940	4	KIAA1109	4	123165092	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	7134982	123165092	67989184	365	142400											
MFSD8	256471	broad.mit.edu	37	chr4	128842683	128842683	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtacctggcttacctgaGgttttggtcctagaattttt	11	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128842683	A	A	128842683	3	1	175	1	0	0	0	0	1	0	0	0	9631	1000	35	4	218	4	MFSD8	4	128842683	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	5677591	128842683	62311593	366	142401											
MGST2	4258	broad.mit.edu	37	chr4	140587104	140587104	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtttacccgataaggaAggtcagcattcaaagtcaag	9	8	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140587104	G	G	140587104	1	3	175	0	1	0	0	0	0	0	0	0	9654	87	3	5		5	MGST2	4	140587104	5'UTR	SNP	A	TCGA-55-1592-01A-01D-0969-08	11744421	140587104	50567172	367	142402											
INPP4B	8821	broad.mit.edu	37	chr4	142950155	142950155	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcagagttgcagcaaccatCcaagtaaaaataacaaagat	7	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142950155	G	G	142950155	1	3	175	0	1	0	0	0	0	0	0	0	7823	870	30	4		4	INPP4B	4	142950155	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2363051	142950155	48204121	368	142403											
SMAD1	4086	broad.mit.edu	37	chr4	146461416	146461416	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcttattttatttgtcaggCacagatgcttgaataagcta	8	6	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146461416	G	G	146461416	1	3	175	0	1	0	0	0	0	0	0	0	14871	725	25	4		4	SMAD1	4	146461416	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3511261	146461416	44692860	369	142404											
MMAA	166785	broad.mit.edu	37	chr4	146567084	146567084	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccctctaggaactggctgAtaattgacccgtaaaactgt	8	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146567084	T	T	146567084	1	4	175	0	1	0	0	0	0	0	0	0	9732	348	12	5		5	MMAA	4	146567084	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	105668	146567084	44587192	370	142405											
MMAA	166785	broad.mit.edu	37	chr4	146572343	146572343	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaaatataaaatgtatatCtctgaaaataaaaatttcca	2	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146572343	T	T	146572343	1	4	175	0	1	0	0	0	0	0	0	0	9732	928	32	4		4	MMAA	4	146572343	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5259	146572343	44581933	371	142406											
TMEM184C	55751	broad.mit.edu	37	chr4	148554839	148554839	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttagcacttttgaaaagCaagtagagaaagatagcact	8	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148554839	T	T	148554839	1	4	175	0	1	0	0	0	0	0	0	0	16229	725	25	4		4	TMEM184C	4	148554839	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1982496	148554839	42599437	372	142407											
PRMT10	90826	broad.mit.edu	37	chr4	148559746	148559746	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctgagtacaagttcctcTcccatttcaacctggatggg	9	11	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148559746	C	C	148559746	2	2	175	1	0	0	0	0	0	0	0	1	12642	1538	54	5		5	PRMT10	4	148559746	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	4907	148559746	42594530	373	142408											
LRBA	987	broad.mit.edu	37	chr4	151765774	151765774	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttaattgtaaaataggagTatgctttttgaaaattaatt	6	2	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151765774	A	A	151765774	1	1	175	0	1	0	0	0	0	0	0	0	9018	1653	57	5		5	LRBA	4	151765774	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	3206028	151765774	39388502	374	142409											
LRBA	987	broad.mit.edu	37	chr4	151765810	151765810	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taattaatctgtatacttacCttcgctgcagatttccctaa	4	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151765810	G	G	151765810	3	3	175	1	0	0	0	0	1	0	0	0	9018	695	24	4	4258	4	LRBA	4	151765810	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	36	151765810	39388466	375	142410											
GUCY1A3	2982	broad.mit.edu	37	chr4	156631670	156631670	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggcatatttgatatggcAgaacatgtattatgtgattt	11	3	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156631670	G	G	156631670	1	3	175	0	1	0	0	0	0	0	0	0	6959	203	7	5		5	GUCY1A3	4	156631670	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4865860	156631670	34522606	376	142411											
ETFDH	2110	broad.mit.edu	37	chr4	159603226	159603226	+	Intron	DEL	A	-	-													gcttaatataattattgtgcAaaacacagggagaatttcca							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	159603226	-	-	159603226	6	5	175	0	1	1	0	1	0	0	0	0	5313	145	5	0		0	ETFDH	4	159603226	Intron	DEL	A	TCGA-55-1592-01A-01D-0969-08	2971556	159603226	31551050	377	142412											
C4orf45	152940	broad.mit.edu	37	chr4	159928877	159928877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctatggggagctcaggGccatggtgctggacttcggg	17	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159928877	T	T	159928877	1	4	175	0	1	0	0	0	0	0	0	0	2296	1218	42	3		3	C4orf45	4	159928877	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	325651	159928877	31225399	378	142413											
ANP32C	23520	broad.mit.edu	37	chr4	165118750	165118750	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagttcttcaaattcatcTgtgagggcttcgagtttgcc	9	10	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118750	A	A	165118750	2	1	175	1	0	0	0	0	0	0	0	1	707	1567	55	5		5	ANP32C	4	165118750	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	5189873	165118750	26035526	379	142414											
DDX60L	91351	broad.mit.edu	37	chr4	169348279	169348279	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaattaatcctaacatttcAactccaaatttcactgaatt	2	10	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169348279	T	T	169348279	2	4	175	1	0	0	0	0	0	0	0	1	4412	117	5	5		5	DDX60L	4	169348279	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	4229529	169348279	21805997	380	142415											
DDX60L	91351	broad.mit.edu	37	chr4	169383281	169383281	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacagcacaaagctatacaGgactgaactcatgtgatcta	7	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169383281	A	A	169383281	1	1	175	0	1	0	0	0	0	0	0	0	4412	1015	35	4		4	DDX60L	4	169383281	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	35002	169383281	21770995	381	142416											
CLCN3	1182	broad.mit.edu	37	chr4	170601384	170601384	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttagtaaaaatttttAaaaacatagtgcataattag	5	2	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170601384	G	G	170601384	1	3	175	0	1	0	0	0	0	0	0	0	3495	377	13	5		5	CLCN3	4	170601384	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1218103	170601384	20552892	382	142417											
MORF4	10934	broad.mit.edu	37	chr4	174537947	174537947	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaagtatttcactttttGtcctttatggcaacctttac	4	8	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174537947	T	T	174537947	1	4	175	0	1	0	0	0	0	0	0	0	9799	1392	48	3		3	MORF4	4	174537947	5'Flank	SNP	G	TCGA-55-1592-01A-01D-0969-08	3936563	174537947	16616329	383	142418											
HPGD	3248	broad.mit.edu	37	chr4	175413100	175413100	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagctatggctaacacatAagctgttcattgggtttttg	9	7	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175413100	G	G	175413100	1	3	175	0	1	0	0	0	0	0	0	0	7401	377	13	5		5	HPGD	4	175413100	3'UTR	SNP	A	TCGA-55-1592-01A-01D-0969-08	875153	175413100	15741176	384	142419											
FAT1	2195	broad.mit.edu	37	chr4	187541804	187541804	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagtagacatcctgggtaAactttaggtgactttctttg	10	7	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187541804	C	C	187541804	3	2	175	1	0	0	0	0	1	0	0	0	5746	14	1	5	7902	5	FAT1	4	187541804	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	12128704	187541804	3612472	385	142420											
TRIML2	205860	broad.mit.edu	37	chr4	189022242	189022242	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggaacatctcctctagctCggtggcaagcttgatcgctt	10	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189022242	T	T	189022242	3	4	175	1	0	0	0	0	1	0	0	0	16676	893	31	4	885	4	TRIML2	4	189022242	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1480438	189022242	2132034	386	142421											
TERT	7015	broad.mit.edu	37	chr5	1258782	1258782	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggctgttcacctagagtCgccaagaaagagtgagaaac	13	8	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1258782	A	A	1258782	1	1	175	0	1	0	0	0	0	0	0	0	15886	899	31	3		3	TERT	5	1258782	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		1258782	179656478	387	142422											
IRX1	79192	broad.mit.edu	37	chr5	3600327	3600327	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgctattgccccgggggCactcaatggagacaaggcct	14	12	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3600327	T	T	3600327	3	4	175	1	0	0	0	0	1	0	0	0	7913	710	25	4	1271	4	IRX1	5	3600327	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2341545	3600327	177314933	388	142423											
ADAMTS16	170690	broad.mit.edu	37	chr5	5190105	5190105	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggactggtgataagtcacCacgcagaccacaccttaagt	9	12	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5190105	T	T	5190105	3	4	175	1	0	0	0	0	1	0	0	0	261	594	21	4	1095	4	ADAMTS16	5	5190105	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1589778	5190105	175725155	389	142424											
PAPD7	11044	broad.mit.edu	37	chr5	6742737	6742737	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttggtgacccagcgcggCgagagtgcaggactggagtg	18	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6742737	A	A	6742737	1	1	175	0	1	0	0	0	0	0	0	0	11520	783	27	3		3	PAPD7	5	6742737	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1552632	6742737	174172523	390	142425											
ADCY2	108	broad.mit.edu	37	chr5	7690926	7690926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaataacttccacaacctGtatgtgaagcggcatacaaa	6	10	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7690926	T	T	7690926	2	4	175	1	0	0	0	0	0	0	0	1	294	1364	48	3		3	ADCY2	5	7690926	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	948189	7690926	173224334	391	142426											
BASP1	10409	broad.mit.edu	37	chr5	17275998	17275998	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attccgaccaaaccgtaaccGtgaaagagtgacaaggacag	10	10	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17275998	A	A	17275998	3	1	175	1	0	0	0	0	1	0	0	0	1322	1145	40	4	675	4	BASP1	5	17275998	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	9585072	17275998	163639262	392	142427											
CDH12	1010	broad.mit.edu	37	chr5	21760456	21760456	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgactcattgagagactgtCcacatttacaatgcaagcaa	7	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21760456	A	A	21760456	1	1	175	0	1	0	0	0	0	0	0	0	3128	870	30	3		3	CDH12	5	21760456	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4484458	21760456	159154804	393	142428											
CDH12	1010	broad.mit.edu	37	chr5	21882749	21882749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccagtgtccagggtactGgctcctcatctcactcgagc	10	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21882749	T	T	21882749	1	4	175	0	1	0	0	0	0	0	0	0	3128	1363	47	2		2	CDH12	5	21882749	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	122293	21882749	159032511	394	142429											
PRDM9	56979	broad.mit.edu	37	chr5	23522757	23522757	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacttcttcattgacagCtgtgctgcccatgggccccc	9	15	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23522757	T	T	23522757	2	4	175	1	0	0	0	0	0	0	0	1	12569	796	28	4		4	PRDM9	5	23522757	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1640008	23522757	157392503	395	142430											
CDH9	1007	broad.mit.edu	37	chr5	26890138	26890138	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccactcacccatttgtaGcttagcaacagatccttttt	4	12	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26890138	T	T	26890138	1	4	175	0	1	0	0	0	0	0	0	0	3147	986	34	3		3	CDH9	5	26890138	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3367381	26890138	154025122	396	142431											
RXFP3	51289	broad.mit.edu	37	chr5	33937437	33937437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accggacccgaggacacggcCggggcgactgctgcggccgg	18	15	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33937437	A	A	33937437	2	1	175	1	0	0	0	0	0	0	0	1	13872	643	23	1		1	RXFP3	5	33937437	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	7047299	33937437	146977823	397	142432											
CAPSL	133690	broad.mit.edu	37	chr5	35910343	35910343	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattcctaagtctgttcacAgttttctgcttatccccctc	4	13	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35910343	T	T	35910343	1	4	175	0	1	0	0	0	0	0	0	0	2665	203	7	5		5	CAPSL	5	35910343	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1972906	35910343	145004917	398	142433											
EGFLAM	133584	broad.mit.edu	37	chr5	38463172	38463172	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcttttcttgttagtcttCcatttgctgtgccgaggcta	10	9	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38463172	T	T	38463172	1	4	175	0	1	0	0	0	0	0	0	0	5006	870	30	4		4	EGFLAM	5	38463172	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2552829	38463172	142452088	399	142434											
HEATR7B2	133558	broad.mit.edu	37	chr5	41005768	41005768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaaaatgcacattttagCagagacatattttactaaac	5	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41005768	A	A	41005768	1	1	175	0	1	0	0	0	0	0	0	0	7102	725	25	3		3	HEATR7B2	5	41005768	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2542596	41005768	139909492	400	142435											
PLCXD3	345557	broad.mit.edu	37	chr5	41510483	41510483	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagcagggcggggcaggtgGagcgggcgccgagcgcctag	21	10	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41510483	T	T	41510483	1	4	175	0	1	0	0	0	0	0	0	0	12138	1189	41	3		3	PLCXD3	5	41510483	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	504715	41510483	139404777	401	142436											
HMGCS1	3157	broad.mit.edu	37	chr5	43297159	43297159	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaatagcagcggtctaaTgcactgaggtagcactgtat	11	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43297159	C	C	43297159	2	2	175	1	0	0	0	0	0	0	0	1	7299	1451	51	5		5	HMGCS1	5	43297159	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	1786676	43297159	137618101	402	142437											
PARP8	79668	broad.mit.edu	37	chr5	50056010	50056010	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcaaaatatcccttaatTctttttcagaggagatggaa	6	6	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50056010	G	G	50056010	1	3	175	0	1	0	0	0	0	0	0	0	11559	1798	62	5		5	PARP8	5	50056010	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	6758851	50056010	130859250	403	142438											
ITGA2	3673	broad.mit.edu	37	chr5	52351515	52351515	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatactgaggtttggcatAgcagtaagtggcttttcttt	10	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52351515	G	G	52351515	3	3	175	1	0	0	0	0	1	0	0	0	7945	410	15	5	957	5	ITGA2	5	52351515	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2295505	52351515	128563745	404	142439											
FST	10468	broad.mit.edu	37	chr5	52779455	52779455	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagggtccagtctgcggGctggatgggaaaacctaccg	16	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52779455	A	A	52779455	2	1	175	1	0	0	0	0	0	0	0	1	6136	1190	42	4		4	FST	5	52779455	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	427940	52779455	128135805	405	142440											
SV2C	22987	broad.mit.edu	37	chr5	75469694	75469694	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattggaacatcatcagtGtctttaactcgaagaatctg	7	8	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75469694	T	T	75469694	1	4	175	0	1	0	0	0	0	0	0	0	15537	1392	48	3		3	SV2C	5	75469694	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	22690239	75469694	105445566	406	142441											
F2RL1	2150	broad.mit.edu	37	chr5	76128923	76128923	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacatgtactgttccattcTcttcatgacctgcctcagtg	6	13	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76128923	A	A	76128923	3	1	175	1	0	0	0	0	1	0	0	0	5387	1551	54	5	497	5	F2RL1	5	76128923	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	659229	76128923	104786337	407	142442											
ARSB	411	broad.mit.edu	37	chr5	78135202	78135202	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagagtccacgaagttcGggtcaatattatgcagcagc	12	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78135202	A	A	78135202	3	1	175	1	0	0	0	0	1	0	0	0	992	1116	39	4	456	4	ARSB	5	78135202	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2006279	78135202	102780058	408	142443											
BHMT	635	broad.mit.edu	37	chr5	78426781	78426781	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaggaatactgggagaatCttcggatagcctcaggccgg	15	8	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78426781	A	A	78426781	3	1	175	1	0	0	0	0	1	0	0	0	1431	913	32	3	1093	3	BHMT	5	78426781	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	291579	78426781	102488479	409	142444											
EDIL3	10085	broad.mit.edu	37	chr5	83550109	83550109	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tactagtttactttgctatgGatgttcccttggcaaagtca	8	8	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83550109	T	T	83550109	1	4	175	0	1	0	0	0	0	0	0	0	4955	1189	41	3		3	EDIL3	5	83550109	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5123328	83550109	97365151	410	142445											
WDR36	134430	broad.mit.edu	37	chr5	110428388	110428388	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taactctgtcctggagcagtCcggttctcccttcccattta	7	14	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110428388	T	T	110428388	1	4	175	0	1	0	0	0	0	0	0	0	17417	870	30	4		4	WDR36	5	110428388	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	26878279	110428388	70486872	411	142446											
RAPGEF6	51735	broad.mit.edu	37	chr5	130883567	130883567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactcccactggtaagagCattcctaaccaattcaacca	5	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130883567	A	A	130883567	1	1	175	0	1	0	0	0	0	0	0	0	13156	725	25	3		3	RAPGEF6	5	130883567	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	20455179	130883567	50031693	412	142447											
HSPA9	3313	broad.mit.edu	37	chr5	137909529	137909529	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaacaactgctcccttgaTtgcttctgatctgtaagaca	6	12	2	3	rs138260125		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137909529	C	C	137909529	3	2	175	1	0	0	0	0	1	0	0	0	7486	1493	52	5	1948	5	HSPA9	5	137909529	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	7025962	137909529	43005731	413	142448											
PCDHB3	56132	broad.mit.edu	37	chr5	140481535	140481535	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacccaggctgaaaaccaaGtacaacataaccgtgctggt	8	12	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140481535	C	C	140481535	3	2	175	1	0	0	0	0	1	0	0	0	11637	1020	36	4	1304	4	PCDHB3	5	140481535	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2572006	140481535	40433725	414	142449											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736176	140736176	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaacaaccccagaggagcctCcatcttatctatgactgctc	6	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140736176	T	T	140736176	3	4	175	1	0	0	0	0	1	0	0	0	11650	855	30	4	1411	4	PCDHGA4	5	140736176	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	254641	140736176	40179084	415	142450											
PCDH1	5097	broad.mit.edu	37	chr5	141236765	141236765	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttaaggccttgtcaccattCccaggcttccactcattcct	5	15	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141236765	A	A	141236765	1	1	175	0	1	0	0	0	0	0	0	0	11600	870	30	3		3	PCDH1	5	141236765	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	500589	141236765	39678495	416	142451											
JAKMIP2	9832	broad.mit.edu	37	chr5	147016513	147016513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctgcagaagagctagCaaccaaatgcctacctgccc	8	14	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147016513	A	A	147016513	1	1	175	0	1	0	0	0	0	0	0	0	8011	725	25	3		3	JAKMIP2	5	147016513	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5779748	147016513	33898747	417	142452											
SPINK7	84651	broad.mit.edu	37	chr5	147693664	147693664	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttgtatatgacacaggTggactgcagcatttacaaga	10	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147693664	A	A	147693664	3	1	175	1	0	0	0	0	1	0	0	0	15182	1710	59	5	99	5	SPINK7	5	147693664	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	677151	147693664	33221596	418	142453											
TIMD4	91937	broad.mit.edu	37	chr5	156381703	156381703	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgagaccaggatgagtaCagacagggcaaagtcacccg	13	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156381703	G	G	156381703	2	3	175	1	0	0	0	0	0	0	0	1	16026	465	17	4		4	TIMD4	5	156381703	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	8688039	156381703	24533557	419	142454											
ITK	3702	broad.mit.edu	37	chr5	156668850	156668850	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccattaaaacaagtgtaTtatatatctagagatgatgg	7	5	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156668850	C	C	156668850	1	2	175	0	1	0	0	0	0	0	0	0	7979	1508	52	5		5	ITK	5	156668850	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	287147	156668850	24246410	420	142455											
ITK	3702	broad.mit.edu	37	chr5	156670882	156670882	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaatgccattcaaacgCcagggggtactatctccctg	9	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156670882	G	G	156670882	1	3	175	0	1	0	0	0	0	0	0	0	7979	754	26	4		4	ITK	5	156670882	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2032	156670882	24244378	421	142456											
EBF1	1879	broad.mit.edu	37	chr5	158140212	158140212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcatattcccaataataCcattttttcggtgccaggta	6	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158140212	A	A	158140212	1	1	175	0	1	0	0	0	0	0	0	0	4920	522	18	3		3	EBF1	5	158140212	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1469330	158140212	22775048	422	142457											
FAF2	23197	broad.mit.edu	37	chr5	175919294	175919294	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttttgaagagaaatatggGagggcacaccctgtcttcta	10	8	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175919294	A	A	175919294	2	1	175	1	0	0	0	0	0	0	0	1	5416	1161	41	4		4	FAF2	5	175919294	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	17779082	175919294	4995966	423	142458											
DBN1	1627	broad.mit.edu	37	chr5	176887283	176887283	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggggtcctgccacctGggaagtggtgggcggatgca	17	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176887283	C	C	176887283	1	2	175	0	1	0	0	0	0	0	0	0	4285	1363	47	4		4	DBN1	5	176887283	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	967989	176887283	4027977	424	142459											
RASGEF1C	255426	broad.mit.edu	37	chr5	179529266	179529266	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccattgatccatgtgtcCatccctcccctaatactgtg	6	15	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179529266	T	T	179529266	1	4	175	0	1	0	0	0	0	0	0	0	13179	609	21	4		4	RASGEF1C	5	179529266	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2641983	179529266	1385994	425	142460											
MYLK4	340156	broad.mit.edu	37	chr6	2678623	2678623	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtctggaggacacggggtCcagagtgagtattttttaaa	13	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2678623	A	A	2678623	1	1	175	0	1	0	0	0	0	0	0	0	10153	870	30	3		3	MYLK4	6	2678623	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		2678623	168436444	426	142461											
RREB1	6239	broad.mit.edu	37	chr6	7240734	7240734	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taccaaatctaactgtgaacGccaccagttgcgcaaacacg	7	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7240734	C	C	7240734	1	2	175	0	1	0	0	0	0	0	0	0	13790	1087	38	4		4	RREB1	6	7240734	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4562111	7240734	163874333	427	142462											
DTNBP1	84062	broad.mit.edu	37	chr6	15637915	15637915	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaattcaatttttaaaaaaTaccatttagcactgaaaaag	3	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15637915	G	G	15637915	1	3	175	0	1	0	0	0	0	0	0	0	4830	1421	49	5		5	DTNBP1	6	15637915	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	8397181	15637915	155477152	428	142463											
HDGFL1	154150	broad.mit.edu	37	chr6	22569979	22569979	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaaacgcctgttcccgTacaaggagtgcaaggagaag	12	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22569979	A	A	22569979	3	1	175	1	0	0	0	0	1	0	0	0	7086	1638	57	5	177	5	HDGFL1	6	22569979	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	6932064	22569979	148545088	429	142464											
KIAA0319	9856	broad.mit.edu	37	chr6	24601417	24601417	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctttgatgttttttaggaGccagatttggcctcaagaac	9	8	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24601417	A	A	24601417	1	1	175	0	1	0	0	0	0	0	0	0	8238	986	34	4		4	KIAA0319	6	24601417	5'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	2031438	24601417	146513650	430	142465											
LRRC16A	55604	broad.mit.edu	37	chr6	25471359	25471359	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caataaagtttttcttctttAgagttatggaatagtcaaag	7	4	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25471359	T	T	25471359	1	4	175	0	1	0	0	0	0	0	0	0	9058	435	15	5		5	LRRC16A	6	25471359	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	869942	25471359	145643708	431	142466											
SCGN	10590	broad.mit.edu	37	chr6	25670109	25670109	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggatttattgcttgctaaAagcattttatttcctcctgg	7	7	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25670109	T	T	25670109	1	4	175	0	1	0	0	0	0	0	0	0	14016	29	1	5		5	SCGN	6	25670109	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	198750	25670109	145444958	432	142467											
SLC17A2	10246	broad.mit.edu	37	chr6	25918620	25918620	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttccatttgataaaggaCattttctttcatataggaag	6	6	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25918620	T	T	25918620	1	4	175	0	1	0	0	0	0	0	0	0	14530	493	17	4		4	SLC17A2	6	25918620	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	248511	25918620	145196447	433	142468											
HIST1H2BC	8347	broad.mit.edu	37	chr6	26123802	26123802	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggtgccctccgacacggCgtgcttggccagctctccgg	13	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26123802	G	G	26123802	3	3	175	1	0	0	0	0	1	0	0	0	7209	768	27	4	53	4	HIST1H2BC	6	26123802	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	205182	26123802	144991265	434	142469											
HIST1H2AH	85235	broad.mit.edu	37	chr6	27115128	27115128	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaatgcggcccgcgacaAcaagaagacccgtatcatcc	10	14	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27115128	T	T	27115128	3	4	175	1	0	0	0	0	1	0	0	0	7201	43	2	5	223	5	HIST1H2AH	6	27115128	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	991326	27115128	143999939	435	142470											
HIST1H2AJ	8331	broad.mit.edu	37	chr6	27782453	27782453	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacgggaaactgaagcccGgcccgagaagagcgggtctt	14	12	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27782453	T	T	27782453	2	4	175	1	0	0	0	0	0	0	0	1	7203	1103	39	1		1	HIST1H2AJ	6	27782453	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	667325	27782453	143332614	436	142471											
PGBD1	84547	broad.mit.edu	37	chr6	28253579	28253579	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgtatacattgtgaaatGattaccacaagctaacttac	6	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28253579	A	A	28253579	1	1	175	0	1	0	0	0	0	0	0	0	11875	1305	45	4		4	PGBD1	6	28253579	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	471126	28253579	142861488	437	142472											
OR11A1	26531	broad.mit.edu	37	chr6	29394899	29394899	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtaaaactggtcaatgtGgttggggccacagaacctca	11	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29394899	A	A	29394899	3	1	175	1	0	0	0	0	1	0	0	0	11018	1348	47	4	431	4	OR11A1	6	29394899	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1141320	29394899	141720168	438	142473											
ATF6B	1388	broad.mit.edu	37	chr6	32087669	32087669	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcttcctctcaggccgtgGtagagagggagccggccctt	14	13	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32087669	A	A	32087669	3	1	175	1	0	0	0	0	1	0	0	0	1089	1261	44	4	1253	4	ATF6B	6	32087669	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2692770	32087669	139027398	439	142474											
BTNL2	56244	broad.mit.edu	37	chr6	32372644	32372644	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcaaaaggatttcctcaaCtgtcacaaagcttaccacaa	4	11	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32372644	G	G	32372644	1	3	175	0	1	0	0	0	0	0	0	0	1575	580	20	4		4	BTNL2	6	32372644	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	284975	32372644	138742423	440	142475											
COL11A2	1302	broad.mit.edu	37	chr6	33133822	33133822	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagcatggatcaaggtcacAgaaagatcaaatcagcctcc	8	11	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33133822	G	G	33133822	1	3	175	0	1	0	0	0	0	0	0	0	3700	203	7	5		5	COL11A2	6	33133822	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	761178	33133822	137981245	441	142476											
TCP11	6954	broad.mit.edu	37	chr6	35108431	35108431	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaaacgagagagggatagTgaagagagaaaacttggggg	17	3	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35108431	C	C	35108431	1	2	175	0	1	0	0	0	0	0	0	0	15835	1711	59	5		5	TCP11	6	35108431	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1974609	35108431	136006636	442	142477											
STK38	11329	broad.mit.edu	37	chr6	36467534	36467534	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtctaaaacaattcactTtgaaagacaagtagggaaat	7	6	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36467534	A	A	36467534	1	1	175	0	1	0	0	0	0	0	0	0	15421	1856	64	5		5	STK38	6	36467534	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1359103	36467534	134647533	443	142478											
DNAH8	1769	broad.mit.edu	37	chr6	38867598	38867598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatgcattgctggtggGtgttggtggttccggaaaac	16	5	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38867598	T	T	38867598	3	4	175	1	0	0	0	0	1	0	0	0	4647	1261	44	3	8689	3	DNAH8	6	38867598	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2400064	38867598	132247469	444	142479											
DNAH8	1769	broad.mit.edu	37	chr6	38976553	38976553	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacttatctcttacatgtttCcctgtaacattctgaacagc	4	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38976553	A	A	38976553	1	1	175	0	1	0	0	0	0	0	0	0	4647	870	30	3		3	DNAH8	6	38976553	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	108955	38976553	132138514	445	142480											
CAPN11	11131	broad.mit.edu	37	chr6	44140984	44140984	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctatgaagcattgtcagGgggcagtaccatggagggcc	15	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44140984	A	A	44140984	3	1	175	1	0	0	0	0	1	0	0	0	2650	1232	43	4	718	4	CAPN11	6	44140984	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	5164431	44140984	126974083	446	142481											
CDC5L	988	broad.mit.edu	37	chr6	44371547	44371547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattttgcattcttttcagaCgtcttgctgccctccaaaaa	6	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44371547	A	A	44371547	3	1	175	1	0	0	0	0	1	0	0	0	3112	550	19	3	563	3	CDC5L	6	44371547	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	230563	44371547	126743520	447	142482											
SUPT3H	8464	broad.mit.edu	37	chr6	44982434	44982434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatttgttgacagtaaaCaaaattaactagttctccag	6	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44982434	A	A	44982434	1	1	175	0	1	0	0	0	0	0	0	0	15515	493	17	3		3	SUPT3H	6	44982434	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	610887	44982434	126132633	448	142483											
DEFB112	245915	broad.mit.edu	37	chr6	50011359	50011359	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggatccaattatttgggtCcgtagggtcacattctgtca	11	8	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50011359	T	T	50011359	3	4	175	1	0	0	0	0	1	0	0	0	4440	855	30	4	73	4	DEFB112	6	50011359	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5028925	50011359	121103708	449	142484											
PKHD1	5314	broad.mit.edu	37	chr6	51586695	51586695	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtgtcttaacaagtctttCcatttggtccatgctccaac	6	12	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51586695	A	A	51586695	1	1	175	0	1	0	0	0	0	0	0	0	12066	870	30	3		3	PKHD1	6	51586695	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1575336	51586695	119528372	450	142485											
PKHD1	5314	broad.mit.edu	37	chr6	51940969	51940969	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttcaaaacagcatcaaaGaagaagttaaattttcccac	4	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51940969	A	A	51940969	1	1	175	0	1	0	0	0	0	0	0	0	12066	957	33	4		4	PKHD1	6	51940969	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	354274	51940969	119174098	451	142486											
KLHL31	401265	broad.mit.edu	37	chr6	53516293	53516293	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattttacaatacaatcagtGtagtaaatgttaaatatttt	4	3	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53516293	A	A	53516293	1	1	175	0	1	0	0	0	0	0	0	0	8456	1392	48	4		4	KLHL31	6	53516293	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	1575324	53516293	117598774	452	142487											
C6orf142	90523	broad.mit.edu	37	chr6	54025173	54025173	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgtcactaggcactagaTgaaccagccaagactgaaag	9	9	1	4	rs142613357	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54025173	A	A	54025173	3	1	175	1	0	0	0	0	1	0	0	0	2356	1461	51	5	711	5	C6orf142	6	54025173	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	508880	54025173	117089894	453	142488											
COL21A1	81578	broad.mit.edu	37	chr6	55923900	55923900	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaatttatttcacatagatCtatgatgacttttcttaaag	4	6	4	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55923900	G	G	55923900	1	3	175	0	1	0	0	0	0	0	0	0	3712	928	32	4		4	COL21A1	6	55923900	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1898727	55923900	115191167	454	142489											
DST	667	broad.mit.edu	37	chr6	56504641	56504641	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgactcacacttaatgtatCtattattgatttacagggtc	6	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56504641	A	A	56504641	1	1	175	0	1	0	0	0	0	0	0	0	4823	928	32	3		3	DST	6	56504641	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	580741	56504641	114610426	455	142490											
EYS	346007	broad.mit.edu	37	chr6	66063322	66063322	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttgaaatgattcaagcaGattgaaaaaaattacataaa	5	3	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66063322	T	T	66063322	1	4	175	0	1	0	0	0	0	0	0	0	5375	957	33	3		3	EYS	6	66063322	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	9558681	66063322	105051745	456	142491											
BAI3	577	broad.mit.edu	37	chr6	70071247	70071247	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatggaccagttcaataTgaacttagagcaacatctcg	8	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70071247	A	A	70071247	3	1	175	1	0	0	0	0	1	0	0	0	1305	1464	51	5	4188	5	BAI3	6	70071247	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	4007925	70071247	101043820	457	142492											
C6orf221	154288	broad.mit.edu	37	chr6	74072525	74072525	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgccagtggaggtgctcGgtcacctccctaagcggttc	12	13	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74072525	A	A	74072525	3	1	175	1	0	0	0	0	1	0	0	0	2378	1116	39	4	75	4	C6orf221	6	74072525	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	4001278	74072525	97042542	458	142493											
EEF1A1	1915	broad.mit.edu	37	chr6	74228549	74228549	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccatccttacgggtgactTtccatcccttgaaccaaggc	8	14	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74228549	C	C	74228549	3	2	175	1	0	0	0	0	1	0	0	0	4963	1841	64	5	760	5	EEF1A1	6	74228549	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	156024	74228549	96886518	459	142494											
CD109	135228	broad.mit.edu	37	chr6	74466546	74466546	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttttaaaggcctaaccAtattttttttcctttgtaaa	4	6	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74466546	G	G	74466546	1	3	175	0	1	0	0	0	0	0	0	0	2993	232	8	5		5	CD109	6	74466546	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	237997	74466546	96648521	460	142495											
IMPG1	3617	broad.mit.edu	37	chr6	76728444	76728444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctactcacctgaagttgGgactttcctgctagctcctg	10	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76728444	A	A	76728444	2	1	175	1	0	0	0	0	0	0	0	1	7798	1219	43	4		4	IMPG1	6	76728444	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	2261898	76728444	94386623	461	142496											
TTK	7272	broad.mit.edu	37	chr6	80741163	80741163	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatattgattaacttttatTtatatattttacttatttag	3	2	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80741163	C	C	80741163	1	2	175	0	1	0	0	0	0	0	0	0	16846	1856	64	5		5	TTK	6	80741163	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	4012719	80741163	90373904	462	142497											
TBX18	9096	broad.mit.edu	37	chr6	85446428	85446428	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatatgtgcagatacttgaGatgatgacagagttaagctt	10	6	0	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85446428	C	C	85446428	3	2	175	1	0	0	0	0	1	0	0	0	15775	942	33	4	28	4	TBX18	6	85446428	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	4705265	85446428	85668639	463	142498											
NT5E	4907	broad.mit.edu	37	chr6	86177027	86177027	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctacttttatagcactcaaTgcttgaaaatagatgcccta	5	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86177027	C	C	86177027	1	2	175	0	1	0	0	0	0	0	0	0	10788	1479	51	5		5	NT5E	6	86177027	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	730599	86177027	84938040	464	142499											
ZNF292	23036	broad.mit.edu	37	chr6	87968870	87968870	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcaaatacaggaaattttAgaaggcttacagaaattaaa	7	4	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87968870	T	T	87968870	3	4	175	1	0	0	0	0	1	0	0	0	17952	417	15	5	5553	5	ZNF292	6	87968870	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1791843	87968870	83146197	465	142500											
GJA10	84694	broad.mit.edu	37	chr6	90604983	90604983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatttgaagaaatattctGtggcccagcagtgtatgatt	9	7	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90604983	T	T	90604983	3	4	175	1	0	0	0	0	1	0	0	0	6465	1377	48	3	798	3	GJA10	6	90604983	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2636113	90604983	80510084	466	142501											
C6orf167	253714	broad.mit.edu	37	chr6	97597755	97597755	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctatattcctgccaaggccCcatttctgctctgaatcctt	6	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97597755	T	T	97597755	4	4	175	1	0	0	0	0	0	1	0	0	2365	624	22	4	115	4	C6orf167	6	97597755	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	6992772	97597755	73517312	467	142502											
MCHR2	84539	broad.mit.edu	37	chr6	100395759	100395759	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccccctcgggcccattggtGaataagaaaaggcattccaa	9	12	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100395759	A	A	100395759	3	1	175	1	0	0	0	0	1	0	0	0	9476	1290	45	4	767	4	MCHR2	6	100395759	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2798004	100395759	70719308	468	142503											
SIM1	6492	broad.mit.edu	37	chr6	100838954	100838954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccacactatcttcatcCcaatgacctcgccctaaaaa	3	16	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100838954	A	A	100838954	3	1	175	1	0	0	0	0	1	0	0	0	14436	624	22	2	720	2	SIM1	6	100838954	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	443195	100838954	70276113	469	142504											
RTN4IP1	84816	broad.mit.edu	37	chr6	107035616	107035616	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatctgctatgcccaatcGgtccatgttcaggaggaaag	11	11	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107035616	A	A	107035616	4	1	175	1	0	0	0	0	0	1	0	0	13840	1124	39	4	274	4	RTN4IP1	6	107035616	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	6196662	107035616	64079451	470	142505											
LAMA4	3910	broad.mit.edu	37	chr6	112461245	112461245	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgccaaatcatttagataTggcgtaacttgtcagttgtg	9	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112461245	A	A	112461245	1	1	175	0	1	0	0	0	0	0	0	0	8680	1479	51	5		5	LAMA4	6	112461245	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	5425629	112461245	58653822	471	142506											
HDAC2	3066	broad.mit.edu	37	chr6	114277837	114277837	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaagagtccatcaaacactgGacaatcttctccaacattaa	4	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114277837	C	C	114277837	3	2	175	1	0	0	0	0	1	0	0	0	7074	1174	41	4	1206	4	HDAC2	6	114277837	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1816592	114277837	56837230	472	142507											
RFX6	222546	broad.mit.edu	37	chr6	117244221	117244221	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctaacacaggatgcatgtaGtactgagaggacggatttta	11	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117244221	C	C	117244221	1	2	175	0	1	0	0	0	0	0	0	0	13375	1044	36	4		4	RFX6	6	117244221	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2966384	117244221	53870846	473	142508											
RFX6	222546	broad.mit.edu	37	chr6	117248730	117248730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttaaaagaatttttcttGgtttttgagatggcaatgag	9	2	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117248730	T	T	117248730	1	4	175	0	1	0	0	0	0	0	0	0	13375	1363	47	2		2	RFX6	6	117248730	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4509	117248730	53866337	474	142509											
NUS1	116150	broad.mit.edu	37	chr6	118015366	118015366	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtttttttatatatatatAcatatatatgtatatgtatg	4	1	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118015366	T	T	118015366	1	4	175	0	1	0	0	0	0	0	0	0	10872	406	14	5		5	NUS1	6	118015366	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	766636	118015366	53099701	475	142510											
ECHDC1	55862	broad.mit.edu	37	chr6	127651821	127651821	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattacagagttgttgtttTtgttatttttctcatgttct	6	4	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127651821	C	C	127651821	1	2	175	0	1	0	0	0	0	0	0	0	4933	1856	64	5		5	ECHDC1	6	127651821	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	9636455	127651821	43463246	476	142511											
THEMIS	387357	broad.mit.edu	37	chr6	128134623	128134623	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgactgatgcaccagaaacTggtccccaacagatacggat	9	12	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128134623	A	A	128134623	3	1	175	1	0	0	0	0	1	0	0	0	15983	1580	55	5	895	5	THEMIS	6	128134623	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	482802	128134623	42980444	477	142512											
HECA	51696	broad.mit.edu	37	chr6	139488509	139488509	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctgtttgttaaaaaccaAacaacaaacaagacagattg	5	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139488509	G	G	139488509	1	3	175	0	1	0	0	0	0	0	0	0	7105	29	1	5		5	HECA	6	139488509	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	11353886	139488509	31626558	478	142513											
NMBR	4829	broad.mit.edu	37	chr6	142397123	142397123	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggatgtggtttggaaaccAacagaagatgaaacagccca	11	7	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142397123	T	T	142397123	3	4	175	1	0	0	0	0	1	0	0	0	10582	130	5	5	341	5	NMBR	6	142397123	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2908614	142397123	28717944	479	142514											
HIVEP2	3097	broad.mit.edu	37	chr6	143080972	143080972	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggacaatggtgggttatgGtataaagcccttctgggaga	14	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143080972	C	C	143080972	4	2	175	1	0	0	0	0	0	1	0	0	7254	1256	44	4	895	4	HIVEP2	6	143080972	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	683849	143080972	28034095	480	142515											
AIG1	51390	broad.mit.edu	37	chr6	143458135	143458135	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgttggggttgtgagtaTgatggaggatgcatttagcc	15	5	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143458135	G	G	143458135	1	3	175	0	1	0	0	0	0	0	0	0	429	1479	51	5		5	AIG1	6	143458135	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	377163	143458135	27656932	481	142516											
SHPRH	257218	broad.mit.edu	37	chr6	146246016	146246016	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaatataaactttcactcCcaatctagaatataattcag	4	8	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146246016	G	G	146246016	1	3	175	0	1	0	0	0	0	0	0	0	14404	638	22	4		4	SHPRH	6	146246016	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2787881	146246016	24869051	482	142517											
C6orf97	80129	broad.mit.edu	37	chr6	151894422	151894422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaaagcaggaagtgagCctcctgaagaaaagctcttc	10	11	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151894422	A	A	151894422	3	1	175	1	0	0	0	0	1	0	0	0	2399	738	26	3	910	3	C6orf97	6	151894422	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5648406	151894422	19220645	483	142518											
VIP	7432	broad.mit.edu	37	chr6	153078346	153078346	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattcgtgcattccttctgTattcttatggctgtctctga	7	9	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153078346	C	C	153078346	1	2	175	0	1	0	0	0	0	0	0	0	17294	1653	57	5		5	VIP	6	153078346	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1183924	153078346	18036721	484	142519											
PACRG	135138	broad.mit.edu	37	chr6	163483243	163483243	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttttgatgggctttgtgAaatgacatttccctatgagt	10	5	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163483243	C	C	163483243	3	2	175	1	0	0	0	0	1	0	0	0	11464	246	9	5	363	5	PACRG	6	163483243	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	10404897	163483243	7631824	485	142520											
TTLL2	83887	broad.mit.edu	37	chr6	167754837	167754837	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgcgtcctgaagctgcAcctgcctcccagctggaagg	13	13	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167754837	T	T	167754837	2	4	175	1	0	0	0	0	0	0	0	1	16853	146	6	5		5	TTLL2	6	167754837	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	4271594	167754837	3360230	486	142521											
TCP10	6953	broad.mit.edu	37	chr6	167796236	167796236	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtccaatgacagaccaCagggacaggaatcagggtcc	12	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167796236	T	T	167796236	1	4	175	0	1	0	0	0	0	0	0	0	15832	493	17	4		4	TCP10	6	167796236	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	41399	167796236	3318831	487	142522											
SNX8	29886	broad.mit.edu	37	chr7	2309411	2309411	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgttggctttgacattagTattctgcaatctcttgactc	7	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2309411	C	C	2309411	1	2	175	0	1	0	0	0	0	0	0	0	15022	1653	57	5		5	SNX8	7	2309411	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08		2309411	156829252	488	142523											
SDK1	221935	broad.mit.edu	37	chr7	4277430	4277430	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacaggtgcaggtccagcCccttcctcgcgtgtcccacg	11	17	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4277430	T	T	4277430	1	4	175	0	1	0	0	0	0	0	0	0	14081	638	22	4		4	SDK1	7	4277430	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1968019	4277430	154861233	489	142524											
FOXK1	221937	broad.mit.edu	37	chr7	4794033	4794033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtcctgaagccctgagcCccacaggggccccctcttca	10	17	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4794033	A	A	4794033	1	1	175	0	1	0	0	0	0	0	0	0	6074	638	22	2		2	FOXK1	7	4794033	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	516603	4794033	154344630	490	142525											
COL28A1	340267	broad.mit.edu	37	chr7	7563786	7563786	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcacacttaatcttctaaTgtgaattataatgctgattt	5	6	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7563786	A	A	7563786	1	1	175	0	1	0	0	0	0	0	0	0	3718	1479	51	5		5	COL28A1	7	7563786	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	2769753	7563786	151574877	491	142526											
THSD7A	221981	broad.mit.edu	37	chr7	11509422	11509422	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagccctgtgcaaaactcaCaaacattgctaggccagaag	8	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11509422	T	T	11509422	1	4	175	0	1	0	0	0	0	0	0	0	16002	493	17	4		4	THSD7A	7	11509422	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3945636	11509422	147629241	492	142527											
ETV1	2115	broad.mit.edu	37	chr7	13971019	13971019	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggacaaaatctgaaagatcTtattaaaaaatggtcaggag	9	5	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13971019	A	A	13971019	1	1	175	0	1	0	0	0	0	0	0	0	5319	1624	56	5		5	ETV1	7	13971019	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	2461597	13971019	145167644	493	142528											
DGKB	1607	broad.mit.edu	37	chr7	14231480	14231480	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtccctgtactggattgtCacacagttcacattgcttgc	8	11	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14231480	A	A	14231480	1	1	175	0	1	0	0	0	0	0	0	0	4506	841	29	3		3	DGKB	7	14231480	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	260461	14231480	144907183	494	142529											
DGKB	1607	broad.mit.edu	37	chr7	14661113	14661113	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttttcactgttgattGtctttcctgtaaaaaagaaa	5	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14661113	A	A	14661113	4	1	175	1	0	0	0	0	0	1	0	0	4506	1386	48	4	1300	4	DGKB	7	14661113	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	429633	14661113	144477550	495	142530											
OSBPL3	26031	broad.mit.edu	37	chr7	24854632	24854633	+	Intron	INS	-	A	A													gctctggggccctggctctgINSccacagcccttccagggtca							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24854633	A	A	24854632	6	5	175	0	1	1	1	0	0	0	0	0	11373	1334	46	0		0	OSBPL3	7	24854632	Intron	INS	-	TCGA-55-1592-01A-01D-0969-08	10193519	24854632	134284031	496	142531											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26236615	26236615	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcttcttcacagttacaTgagcccctggttttccagat	7	12	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26236615	G	G	26236615	3	3	175	1	0	0	0	0	1	0	0	0	7326	1464	51	5	766	5	HNRNPA2B1	7	26236615	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	1381983	26236615	132902048	497	142532											
HNRNPA2B1	3181	broad.mit.edu	37	chr7	26236626	26236626	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagttacatgagcccctggTtttccagattcctaaaatag	7	10	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26236626	G	G	26236626	3	3	175	1	0	0	0	0	1	0	0	0	7326	1722	60	5	777	5	HNRNPA2B1	7	26236626	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	11	26236626	132902037	498	142533											
WIPF3	644150	broad.mit.edu	37	chr7	29928925	29928925	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcgcttgtgtgcagatgActtcgagtctaaattcacgt	9	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29928925	T	T	29928925	3	4	175	1	0	0	0	0	1	0	0	0	17496	275	10	5	1275	5	WIPF3	7	29928925	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	3692299	29928925	129209738	499	142534											
GHRHR	2692	broad.mit.edu	37	chr7	31010827	31010827	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccatcaccatcctggttgctCtcaggtttgtcatcctcatc	6	15	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31010827	G	G	31010827	3	3	175	1	0	0	0	0	1	0	0	0	6437	913	32	4	478	4	GHRHR	7	31010827	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1081902	31010827	128127836	500	142535											
BBS9	27241	broad.mit.edu	37	chr7	33392628	33392628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggatgatacagtgccttgAttctgctatggagagcatag	12	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33392628	T	T	33392628	1	4	175	0	1	0	0	0	0	0	0	0	1347	348	12	5		5	BBS9	7	33392628	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2381801	33392628	125746035	501	142536											
BMPER	168667	broad.mit.edu	37	chr7	34091581	34091581	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacagcttgtacctgcaGggtaaggcagctctgagagg	14	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34091581	T	T	34091581	3	4	175	1	0	0	0	0	1	0	0	0	1474	1014	35	2	815	2	BMPER	7	34091581	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	698953	34091581	125047082	502	142537											
AMPH	273	broad.mit.edu	37	chr7	38534172	38534172	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgttacacagaaatgagtgaGgattctcttctcccttcctc	7	12	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38534172	C	C	38534172	1	2	175	0	1	0	0	0	0	0	0	0	588	1015	35	4		4	AMPH	7	38534172	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4442591	38534172	120604491	503	142538											
VPS41	27072	broad.mit.edu	37	chr7	38836631	38836631	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgtaccttggaaagaattCctagcacatcatattctccc	5	11	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38836631	T	T	38836631	1	4	175	0	1	0	0	0	0	0	0	0	17337	870	30	4		4	VPS41	7	38836631	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	302459	38836631	120302032	504	142539											
VPS41	27072	broad.mit.edu	37	chr7	38948930	38948930	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcatttctgctgccaattctCcaaactcaatggaattctgc	5	12	5	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38948930	T	T	38948930	1	4	175	0	1	0	0	0	0	0	0	0	17337	870	30	4		4	VPS41	7	38948930	5'Flank	SNP	C	TCGA-55-1592-01A-01D-0969-08	112299	38948930	120189733	505	142540											
POU6F2	11281	broad.mit.edu	37	chr7	39243834	39243834	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttctcttttgaattccagGggctagaggaaacccagcat	9	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39243834	C	C	39243834	3	2	175	1	0	0	0	0	1	0	0	0	12381	1246	43	4	201	4	POU6F2	7	39243834	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	294904	39243834	119894829	506	142541											
OGDH	4967	broad.mit.edu	37	chr7	44687385	44687385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgagagcagtcagctgcGttgcttgagctcctctcgct	12	12	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44687385	T	T	44687385	1	4	175	0	1	0	0	0	0	0	0	0	10934	1160	40	3		3	OGDH	7	44687385	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5443551	44687385	114451278	507	142542											
ADCY1	107	broad.mit.edu	37	chr7	45717379	45717379	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaacccgaccccaccctgcAgcggatctggctggagggag	13	15	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45717379	T	T	45717379	1	4	175	0	1	0	0	0	0	0	0	0	292	203	7	5		5	ADCY1	7	45717379	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1029994	45717379	113421284	508	142543											
ADCY1	107	broad.mit.edu	37	chr7	45742956	45742956	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgagtggatgggactaatgGaggctcatgataccccaggc	15	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45742956	A	A	45742956	1	1	175	0	1	0	0	0	0	0	0	0	292	1189	41	4		4	ADCY1	7	45742956	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	25577	45742956	113395707	509	142544											
SUN3	256979	broad.mit.edu	37	chr7	48033872	48033872	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctagccaaccaccttctAtcaggccaatctgaatgaca	5	14	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48033872	G	G	48033872	1	3	175	0	1	0	0	0	0	0	0	0	15511	464	16	5		5	SUN3	7	48033872	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2290916	48033872	111104791	510	142545											
DDC	1644	broad.mit.edu	37	chr7	50547602	50547602	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggctgataaccaagtaCcctagactggaccacctctc	8	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50547602	T	T	50547602	1	4	175	0	1	0	0	0	0	0	0	0	4358	522	18	4		4	DDC	7	50547602	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2513730	50547602	108591061	511	142546											
VSTM2A	222008	broad.mit.edu	37	chr7	54610349	54610349	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgagactgagcctgcCatccactcgcacgcctttct	9	16	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54610349	A	A	54610349	1	1	175	0	1	0	0	0	0	0	0	0	17356	609	21	2		2	VSTM2A	7	54610349	5'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	4062747	54610349	104528314	512	142547											
WBSCR17	64409	broad.mit.edu	37	chr7	71176999	71176999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcgattttgccccctcCcagaatggagccatcatgaa	7	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71176999	A	A	71176999	1	1	175	0	1	0	0	0	0	0	0	0	17391	638	22	2		2	WBSCR17	7	71176999	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	16566650	71176999	87961664	513	142548											
HIP1	3092	broad.mit.edu	37	chr7	75171247	75171247	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctctcacctgagaatcCatctcttggcgtttgatctg	10	11	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75171247	A	A	75171247	3	1	175	1	0	0	0	0	1	0	0	0	7181	594	21	2	182	2	HIP1	7	75171247	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	3994248	75171247	83967416	514	142549											
PCLO	27445	broad.mit.edu	37	chr7	82544499	82544499	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagctgagcgtatggtatttCctaatgtgcccagtcctgtg	12	9	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82544499	G	G	82544499	3	3	175	1	0	0	0	0	1	0	0	0	11677	855	30	4	2718	4	PCLO	7	82544499	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	7373252	82544499	76594164	515	142550											
KRIT1	889	broad.mit.edu	37	chr7	91865874	91865874	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctgaaaaagaaaaatgaAgaattatgctaccatataaa	5	4	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91865874	G	G	91865874	1	3	175	0	1	0	0	0	0	0	0	0	8516	87	3	5		5	KRIT1	7	91865874	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	9321375	91865874	67272789	516	142551											
CDK6	1021	broad.mit.edu	37	chr7	92300893	92300893	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttactgagaaggtggctgTtggcttagactcctgactaa	12	7	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92300893	C	C	92300893	1	2	175	0	1	0	0	0	0	0	0	0	3178	1740	60	5		5	CDK6	7	92300893	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	435019	92300893	66837770	517	142552											
CCDC132	55610	broad.mit.edu	37	chr7	92887757	92887757	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgatatatagaaacagtAaagcagacaaaattcagaag	7	5	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92887757	G	G	92887757	1	3	175	0	1	0	0	0	0	0	0	0	2793	377	13	5		5	CCDC132	7	92887757	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	586864	92887757	66250906	518	142553											
CCDC132	55610	broad.mit.edu	37	chr7	92887876	92887876	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggagcctttttctattgAcatgatattacttcatttag	6	7	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92887876	C	C	92887876	1	2	175	0	1	0	0	0	0	0	0	0	2793	290	10	5		5	CCDC132	7	92887876	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	119	92887876	66250787	519	142554											
GNG11	2791	broad.mit.edu	37	chr7	93555536	93555536	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttatttcataaataacttGggagaaactgcatcctaagt	7	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93555536	T	T	93555536	1	4	175	0	1	0	0	0	0	0	0	0	6588	1363	47	2		2	GNG11	7	93555536	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	667660	93555536	65583127	520	142555											
TRRAP	8295	broad.mit.edu	37	chr7	98533224	98533224	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaatttgtgtgaggctgAagattcagctttaacaaagc	11	5	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98533224	G	G	98533224	3	3	175	1	0	0	0	0	1	0	0	0	16726	246	9	5	4143	5	TRRAP	7	98533224	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	4977688	98533224	60605439	521	142556											
CYP3A7	1551	broad.mit.edu	37	chr7	99311132	99311132	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgaattctgagagtcaatCatcagctgaaggaaatccac	8	8	4	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99311132	T	T	99311132	3	4	175	1	0	0	0	0	1	0	0	0	4214	826	29	4	706	4	CYP3A7	7	99311132	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	777908	99311132	59827531	522	142557											
PCOLCE	5118	broad.mit.edu	37	chr7	100200282	100200282	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctgacacaccactccCcagattccccaccgcctcac	4	22	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100200282	G	G	100200282	1	3	175	0	1	0	0	0	0	0	0	0	11688	638	22	4		4	PCOLCE	7	100200282	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	889150	100200282	58938381	523	142558											
GIGYF1	64599	broad.mit.edu	37	chr7	100284451	100284451	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccacatcgtgctgggagaCgggaagacaggggcagttat	16	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100284451	T	T	100284451	1	4	175	0	1	0	0	0	0	0	0	0	6441	551	19	4		4	GIGYF1	7	100284451	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	84169	100284451	58854212	524	142559											
TRIP6	7205	broad.mit.edu	37	chr7	100470537	100470537	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggagtgcagtggcacaAtcttggctcactgcaacctc	12	12	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100470537	G	G	100470537	1	3	175	0	1	0	0	0	0	0	0	0	16684	116	4	5		5	TRIP6	7	100470537	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	186086	100470537	58668126	525	142560											
SLC26A5	375611	broad.mit.edu	37	chr7	103017307	103017307	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtctccatattcttttacAatctgtaataatgttgaaat	4	7	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103017307	T	T	103017307	2	4	175	1	0	0	0	0	0	0	0	1	14634	126	5	5		5	SLC26A5	7	103017307	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	2546770	103017307	56121356	526	142561											
RELN	5649	broad.mit.edu	37	chr7	103155820	103155820	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgatccaggccgtcatgtCttggctgccaccagcggaag	12	13	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103155820	T	T	103155820	3	4	175	1	0	0	0	0	1	0	0	0	13328	913	32	4	2515	4	RELN	7	103155820	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	138513	103155820	55982843	527	142562											
RELN	5649	broad.mit.edu	37	chr7	103160032	103160032	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagattatagattttctatgGattttttttttttttgagac	6	3	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103160032	A	A	103160032	1	1	175	0	1	0	0	0	0	0	0	0	13328	1189	41	4		4	RELN	7	103160032	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4212	103160032	55978631	528	142563											
SRPK2	6733	broad.mit.edu	37	chr7	104942528	104942528	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaactggctctaaggatgatGagtagcacttggaatttgag	12	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104942528	A	A	104942528	1	1	175	0	1	0	0	0	0	0	0	0	15278	1305	45	4		4	SRPK2	7	104942528	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1782496	104942528	54196135	529	142564											
PIK3CG	5294	broad.mit.edu	37	chr7	106524641	106524641	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtttattcctgtgcaggCtactgtgtggcaacctttgt	10	8	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106524641	T	T	106524641	2	4	175	1	0	0	0	0	0	0	0	1	12011	784	28	4		4	PIK3CG	7	106524641	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1582113	106524641	52614022	530	142565											
DUS4L	11062	broad.mit.edu	37	chr7	107214306	107214306	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaattttccaaaagagtAgaaaaaaaactgtgtgaaca	8	4	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107214306	G	G	107214306	1	3	175	0	1	0	0	0	0	0	0	0	4848	435	15	5		5	DUS4L	7	107214306	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	689665	107214306	51924357	531	142566											
SLC26A4	5172	broad.mit.edu	37	chr7	107323604	107323604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtgtgtgtgctcgtgtgCgtgtagcagcaggaagtata	16	6	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107323604	A	A	107323604	1	1	175	0	1	0	0	0	0	0	0	0	14633	783	27	3		3	SLC26A4	7	107323604	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	109298	107323604	51815059	532	142567											
SLC26A4	5172	broad.mit.edu	37	chr7	107330835	107330835	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctattcctcttgttccactCcctcacctgaaatctcttaa	2	16	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107330835	A	A	107330835	1	1	175	0	1	0	0	0	0	0	0	0	14633	870	30	3		3	SLC26A4	7	107330835	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	7231	107330835	51807828	533	142568											
LAMB4	22798	broad.mit.edu	37	chr7	107669709	107669709	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacatatatgcatgatgattCtcctaattccattcatagaa	4	8	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107669709	A	A	107669709	1	1	175	0	1	0	0	0	0	0	0	0	8685	928	32	3		3	LAMB4	7	107669709	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	338874	107669709	51468954	534	142569											
LAMB4	22798	broad.mit.edu	37	chr7	107743504	107743504	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcacgaatgcacgcgtaggGatctgagatggtcttgagcg	14	9	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107743504	A	A	107743504	3	1	175	1	0	0	0	0	1	0	0	0	8685	1174	41	4	4220	4	LAMB4	7	107743504	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	73795	107743504	51395159	535	142570											
TFEC	22797	broad.mit.edu	37	chr7	115624256	115624256	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgttgacttcaattacTttaatagaggttttttcaaa	5	4	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115624256	C	C	115624256	1	2	175	0	1	0	0	0	0	0	0	0	15925	1624	56	5		5	TFEC	7	115624256	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	7880752	115624256	43514407	536	142571											
ASZ1	136991	broad.mit.edu	37	chr7	117067548	117067548	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccctgtcggcaccgcgcGcccttcagctctccgggcgc	12	20	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117067548	T	T	117067548	1	4	175	0	1	0	0	0	0	0	0	0	1073	1102	38	3		3	ASZ1	7	117067548	5'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	1443292	117067548	42071115	537	142572											
CFTR	1080	broad.mit.edu	37	chr7	117242935	117242935	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgagtattccatgtccTattgtgtagattgtgtttta	9	4	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117242935	A	A	117242935	1	1	175	0	1	0	0	0	0	0	0	0	3324	1537	53	5		5	CFTR	7	117242935	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	175387	117242935	41895728	538	142573											
GRM8	2918	broad.mit.edu	37	chr7	126249297	126249297	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagagagaatcaagtcatAcattttctaagagtttattt	7	4	3	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126249297	G	G	126249297	1	3	175	0	1	0	0	0	0	0	0	0	6869	406	14	5		5	GRM8	7	126249297	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	9006362	126249297	32889366	539	142574											
SND1	27044	broad.mit.edu	37	chr7	127732150	127732150	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagccccgctcacgccaGtccctcttcctctgccggga	8	22	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127732150	A	A	127732150	1	1	175	0	1	0	0	0	0	0	0	0	14958	1044	36	4		4	SND1	7	127732150	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	1482853	127732150	31406513	540	142575											
PLXNA4	91584	broad.mit.edu	37	chr7	131908477	131908477	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcttgagtctctatggtcTagcaaaacatttttagtatt	9	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131908477	A	A	131908477	1	1	175	0	1	0	0	0	0	0	0	0	12217	1537	53	5		5	PLXNA4	7	131908477	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	4176327	131908477	27230186	541	142576											
DGKI	9162	broad.mit.edu	37	chr7	137407412	137407412	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagctgcggaagcccagacAccaggaaggtgagatcttcg	14	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137407412	T	T	137407412	1	4	175	0	1	0	0	0	0	0	0	0	4511	174	6	5		5	DGKI	7	137407412	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	5498935	137407412	21731251	542	142577											
ZC3HAV1L	92092	broad.mit.edu	37	chr7	138713464	138713464	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctacctgtattttcaagcatCttgtgcagcttcatatgctt	6	10	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138713464	G	G	138713464	3	3	175	1	0	0	0	0	1	0	0	0	17702	912	32	4	170	4	ZC3HAV1L	7	138713464	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1306052	138713464	20425199	543	142578											
DENND2A	27147	broad.mit.edu	37	chr7	140301227	140301227	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtctgcactggatttctgtCtcccggtccacagtcttctg	10	13	5	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140301227	G	G	140301227	3	3	175	1	0	0	0	0	1	0	0	0	4469	913	32	4	2130	4	DENND2A	7	140301227	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1587763	140301227	18837436	544	142579											
AGK	55750	broad.mit.edu	37	chr7	141296228	141296228	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttttcgttaatatgagatCatgaaagaatatttttcccc	6	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141296228	T	T	141296228	1	4	175	0	1	0	0	0	0	0	0	0	383	841	29	4		4	AGK	7	141296228	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	995001	141296228	17842435	545	142580											
WEE2	494551	broad.mit.edu	37	chr7	141416082	141416082	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaaggtaagcgtagttctTtgtcccagcggccacaatat	10	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141416082	A	A	141416082	1	1	175	0	1	0	0	0	0	0	0	0	17472	1856	64	5		5	WEE2	7	141416082	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	119854	141416082	17722581	546	142581											
KEL	3792	broad.mit.edu	37	chr7	142640627	142640627	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtccagctggaaagactAccacatggtcagataccgaa	11	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142640627	G	G	142640627	3	3	175	1	0	0	0	0	1	0	0	0	8212	391	14	5	569	5	KEL	7	142640627	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1224545	142640627	16498036	547	142582											
FAM115A	9747	broad.mit.edu	37	chr7	143554555	143554555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttacccatcagcttcacGtctatcaccgacctgctctc	4	19	5	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143554555	T	T	143554555	1	4	175	0	1	0	0	0	0	0	0	0	5451	1160	40	3		3	FAM115A	7	143554555	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	913928	143554555	15584108	548	142583											
OR2A14	135941	broad.mit.edu	37	chr7	143827010	143827010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcccgccatcctgaggagCagcagaaagttctttccctg	10	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143827010	A	A	143827010	3	1	175	1	0	0	0	0	1	0	0	0	11070	711	25	3	807	3	OR2A14	7	143827010	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	272455	143827010	15311653	549	142584											
CHPF2	54480	broad.mit.edu	37	chr7	150932245	150932245	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgaaccgtacggtggcCcatcacttccctcggttact	10	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150932245	A	A	150932245	2	1	175	1	0	0	0	0	0	0	0	1	3400	610	22	2		2	CHPF2	7	150932245	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	7105235	150932245	8206418	550	142585											
GALNTL5	168391	broad.mit.edu	37	chr7	151704860	151704860	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatataattttgaggaaactAcagaatgactttctctgtga	7	5	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151704860	G	G	151704860	1	3	175	0	1	0	0	0	0	0	0	0	6286	406	14	5		5	GALNTL5	7	151704860	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	772615	151704860	7433803	551	142586											
DPP6	1804	broad.mit.edu	37	chr7	154379601	154379601	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattccatggagaccctggcTggaggattgcaggagagtcc	14	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154379601	G	G	154379601	1	3	175	0	1	0	0	0	0	0	0	0	4770	1595	55	5		5	DPP6	7	154379601	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	2674741	154379601	4759062	552	142587											
DPP6	1804	broad.mit.edu	37	chr7	154379663	154379663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaggcttcgcagccatGcacctgcagccctcaggcag	11	17	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154379663	T	T	154379663	1	4	175	0	1	0	0	0	0	0	0	0	4770	1334	46	3		3	DPP6	7	154379663	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	62	154379663	4759000	553	142588											
PTPRN2	5799	broad.mit.edu	37	chr7	157930976	157930976	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtgggcacccatggcgCtgcagtcacctggaaagctg	16	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157930976	A	A	157930976	1	1	175	0	1	0	0	0	0	0	0	0	12916	812	28	3		3	PTPRN2	7	157930976	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3551313	157930976	1207687	554	142589											
CSMD1	64478	broad.mit.edu	37	chr8	2855548	2855548	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctacctcgacacgtgggcaGagggctactccactggccgt	12	15	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2855548	T	T	2855548	3	4	175	1	0	0	0	0	1	0	0	0	3978	933	33	3	2400	3	CSMD1	8	2855548	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08		2855548	143508474	555	142590											
CSMD1	64478	broad.mit.edu	37	chr8	2857690	2857690	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattttaaaatttagagtgtCtgtcatttataaaagtagta	6	2	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2857690	A	A	2857690	1	1	175	0	1	0	0	0	0	0	0	0	3978	928	32	3		3	CSMD1	8	2857690	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2142	2857690	143506332	556	142591											
CSMD1	64478	broad.mit.edu	37	chr8	3165798	3165798	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagcaccctaaggcctgGcttttgcacaatggtatgac	10	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3165798	A	A	3165798	1	1	175	0	1	0	0	0	0	0	0	0	3978	1218	42	4		4	CSMD1	8	3165798	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	308108	3165798	143198224	557	142592											
DLC1	10395	broad.mit.edu	37	chr8	12943774	12943774	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcatgaccctcaccataTaaaaaaatcagaatcagaac	3	12	4	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12943774	C	C	12943774	1	2	175	0	1	0	0	0	0	0	0	0	4590	1421	49	5		5	DLC1	8	12943774	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	9777976	12943774	133420248	558	142593											
XPO7	23039	broad.mit.edu	37	chr8	21823962	21823962	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaatgtgtgtggtacttAtatcatgtttatgtgcttaa	9	3	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21823962	G	G	21823962	1	3	175	0	1	0	0	0	0	0	0	0	17576	464	16	5		5	XPO7	8	21823962	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	8880188	21823962	124540060	559	142594											
RHOBTB2	23221	broad.mit.edu	37	chr8	22872180	22872180	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgtgcttcttcagctgAttggtggccgtgtgtgttac	13	8	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22872180	G	G	22872180	1	3	175	0	1	0	0	0	0	0	0	0	13443	348	12	5		5	RHOBTB2	8	22872180	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1048218	22872180	123491842	560	142595											
LOXL2	4017	broad.mit.edu	37	chr8	23155747	23155747	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggccacctgtgtgtgcCctcctcaaaaggacaggtgc	13	13	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23155747	A	A	23155747	1	1	175	0	1	0	0	0	0	0	0	0	8987	638	22	2		2	LOXL2	8	23155747	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	283567	23155747	123208275	561	142596											
EBF2	64641	broad.mit.edu	37	chr8	25708042	25708042	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggagctatacaatgatgTgctgtttgctcttactttgc	10	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25708042	A	A	25708042	1	1	175	0	1	0	0	0	0	0	0	0	4921	1711	59	5		5	EBF2	8	25708042	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	2552295	25708042	120655980	562	142597											
BNIP3L	665	broad.mit.edu	37	chr8	26267807	26267807	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agactgaagagttttaagtaGagttcaacctgtggacaagc	11	6	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26267807	A	A	26267807	1	1	175	0	1	0	0	0	0	0	0	0	1485	957	33	4		4	BNIP3L	8	26267807	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	559765	26267807	120096215	563	142598											
BNIP3L	665	broad.mit.edu	37	chr8	26267843	26267843	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagctggtatagaactgttGaaacaggtgaaacatgatgc	11	6	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26267843	A	A	26267843	1	1	175	0	1	0	0	0	0	0	0	0	1485	1305	45	4		4	BNIP3L	8	26267843	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	36	26267843	120096179	564	142599											
DPYSL2	1808	broad.mit.edu	37	chr8	26485502	26485502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatcagtgtcccttgggcActgtgcagagcctcagggaa	13	10	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26485502	T	T	26485502	1	4	175	0	1	0	0	0	0	0	0	0	4787	174	6	5		5	DPYSL2	8	26485502	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	217659	26485502	119878520	565	142600											
CCDC25	55246	broad.mit.edu	37	chr8	27614179	27614179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taattgcaaaggataaagaaCaagatatgatgcatcatcag	8	5	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27614179	A	A	27614179	1	1	175	0	1	0	0	0	0	0	0	0	2827	493	17	3		3	CCDC25	8	27614179	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1128677	27614179	118749843	566	142601											
C8orf80	389643	broad.mit.edu	37	chr8	27891171	27891171	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgccatttttcaggcaaAcagctttcagggtctgatga	10	8	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27891171	G	G	27891171	3	3	175	1	0	0	0	0	1	0	0	0	2465	43	2	5	759	5	C8orf80	8	27891171	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	276992	27891171	118472851	567	142602											
PPP2CB	5516	broad.mit.edu	37	chr8	30655032	30655032	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catatgaatctagaccccagCttaccaatagtcaatctctg	5	12	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30655032	T	T	30655032	1	4	175	0	1	0	0	0	0	0	0	0	12482	812	28	4		4	PPP2CB	8	30655032	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2763861	30655032	115708990	568	142603											
TEX15	56154	broad.mit.edu	37	chr8	30703478	30703478	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctttcttctcctactttaGttataagctgcaaagatgtg	6	8	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30703478	C	C	30703478	3	2	175	1	0	0	0	0	1	0	0	0	15901	1029	36	4	5329	4	TEX15	8	30703478	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	48446	30703478	115660544	569	142604											
KCNU1	157855	broad.mit.edu	37	chr8	36763473	36763473	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacatccctcaccagccatAagaataatatgcaaagtaac	4	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36763473	C	C	36763473	1	2	175	0	1	0	0	0	0	0	0	0	8163	377	13	5		5	KCNU1	8	36763473	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	6059995	36763473	109600549	570	142605											
GPR124	25960	broad.mit.edu	37	chr8	37686860	37686860	+	Intron	DEL	G	-	-													cttctccgactgtaagtgatGgggtgagaagtggggagggg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37686860	-	-	37686860	6	5	175	0	1	1	0	1	0	0	0	0	6703	1363	47	0		0	GPR124	8	37686860	Intron	DEL	G	TCGA-55-1592-01A-01D-0969-08	923387	37686860	108677162	571	142606											
ADAM32	203102	broad.mit.edu	37	chr8	39142377	39142377	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctaagaaatgaaaattctGtctttccttccgtggtcaca	7	10	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39142377	T	T	39142377	1	4	175	0	1	0	0	0	0	0	0	0	249	1392	48	3		3	ADAM32	8	39142377	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	1455517	39142377	107221645	572	142607											
PLAT	5327	broad.mit.edu	37	chr8	42046532	42046532	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttgcttctgagcacagggCgcagccatgactgatgttgc	14	10	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42046532	G	G	42046532	3	3	175	1	0	0	0	0	1	0	0	0	12116	768	27	4	1559	4	PLAT	8	42046532	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2904155	42046532	104317490	573	142608											
EFCAB1	79645	broad.mit.edu	37	chr8	49647613	49647613	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggtgggacccaggctcggtCcaggagcctcggcctgtcca	16	14	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49647613	T	T	49647613	1	4	175	0	1	0	0	0	0	0	0	0	4973	870	30	4		4	EFCAB1	8	49647613	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	7601081	49647613	96716409	574	142609											
PXDNL	137902	broad.mit.edu	37	chr8	52359614	52359614	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttttcacccccaacgaaCtgactgcttgacattcatat	4	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52359614	T	T	52359614	3	4	175	1	0	0	0	0	1	0	0	0	12956	565	20	4	2964	4	PXDNL	8	52359614	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2712001	52359614	94004408	575	142610											
ST18	9705	broad.mit.edu	37	chr8	53028764	53028764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagctcagtcgtggcaacCccgtgggtagatgcatgatg	13	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53028764	A	A	53028764	1	1	175	0	1	0	0	0	0	0	0	0	15330	638	22	2		2	ST18	8	53028764	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	669150	53028764	93335258	576	142611											
SULF1	23213	broad.mit.edu	37	chr8	70515570	70515570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacaggtgtgtcattgttcCtcctctcagccagccccaaa	7	14	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70515570	T	T	70515570	1	4	175	0	1	0	0	0	0	0	0	0	15488	696	24	4		4	SULF1	8	70515570	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	17486806	70515570	75848452	577	142612											
MSC	9242	broad.mit.edu	37	chr8	72754874	72754874	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcatttaacgaataatcccAtcaagtgagttccagtccga	7	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72754874	T	T	72754874	1	4	175	0	1	0	0	0	0	0	0	0	9962	232	8	5		5	MSC	8	72754874	3'UTR	SNP	A	TCGA-55-1592-01A-01D-0969-08	2239304	72754874	73609148	578	142613											
ZFHX4	79776	broad.mit.edu	37	chr8	77767721	77767721	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaacctgcaaccacacCtaccacggaggtctgcgatg	9	15	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767721	A	A	77767721	3	1	175	1	0	0	0	0	1	0	0	0	17761	681	24	2	8598	2	ZFHX4	8	77767721	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5012847	77767721	68596301	579	142614											
IL7	3574	broad.mit.edu	37	chr8	79673006	79673006	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctctgcggaatttcccaggGagtttcatttgaatatcaag	10	8	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79673006	A	A	79673006	1	1	175	0	1	0	0	0	0	0	0	0	7774	1189	41	4		4	IL7	8	79673006	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1905285	79673006	66691016	580	142615											
FABP9	646480	broad.mit.edu	37	chr8	82370795	82370795	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ataacttgaaaggcatgtatCaaataggaacatataaagac	7	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82370795	G	G	82370795	1	3	175	0	1	0	0	0	0	0	0	0	5409	841	29	4		4	FABP9	8	82370795	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2697789	82370795	63993227	581	142616											
FABP9	646480	broad.mit.edu	37	chr8	82371585	82371585	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attcactcctacaagacagaGatagccttggaccttattaa	6	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82371585	C	C	82371585	1	2	175	0	1	0	0	0	0	0	0	0	5409	957	33	4		4	FABP9	8	82371585	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	790	82371585	63992437	582	142617											
LRRCC1	85444	broad.mit.edu	37	chr8	86042277	86042277	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcaacttcttgcattgAaagaacaggaacacaggtaa	7	8	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86042277	G	G	86042277	3	3	175	1	0	0	0	0	1	0	0	0	9113	247	9	5	1792	5	LRRCC1	8	86042277	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	3670692	86042277	60321745	583	142618											
CNGB3	54714	broad.mit.edu	37	chr8	87682961	87682961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtgtgagccactgcaccCcgccagtaatcctcttatta	8	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87682961	A	A	87682961	1	1	175	0	1	0	0	0	0	0	0	0	3633	638	22	2		2	CNGB3	8	87682961	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1640684	87682961	58681061	584	142619											
RIMS2	9699	broad.mit.edu	37	chr8	104987816	104987816	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaactaataggatatatGtatatacgaaagggagttta	8	3	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104987816	T	T	104987816	1	4	175	0	1	0	0	0	0	0	0	0	13479	1392	48	3		3	RIMS2	8	104987816	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	17304855	104987816	41376206	585	142620											
TM7SF4	81501	broad.mit.edu	37	chr8	105361663	105361663	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaggaaaaacctggggCtgtttttcctccccatactt	8	10	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105361663	T	T	105361663	2	4	175	1	0	0	0	0	0	0	0	1	16099	796	28	4		4	TM7SF4	8	105361663	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	373847	105361663	41002359	586	142621											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457293	110457293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctaatacatggagtgcCtgcccagtgccagggaaact	10	11	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110457293	A	A	110457293	3	1	175	1	0	0	0	0	1	0	0	0	12067	681	24	2	5345	2	PKHD1L1	8	110457293	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5095630	110457293	35906729	587	142622											
PKHD1L1	93035	broad.mit.edu	37	chr8	110504206	110504206	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatttaagttcaactctcTggcatgcagcaattgaggta	9	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110504206	A	A	110504206	3	1	175	1	0	0	0	0	1	0	0	0	12067	1580	55	5	10465	5	PKHD1L1	8	110504206	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	46913	110504206	35859816	588	142623											
CSMD3	114788	broad.mit.edu	37	chr8	113275890	113275890	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcactgcggtacttcaccActccaggtaccattccctac	6	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113275890	T	T	113275890	3	4	175	1	0	0	0	0	1	0	0	0	3980	156	6	5	1327	5	CSMD3	8	113275890	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2771684	113275890	33088132	589	142624											
CSMD3	114788	broad.mit.edu	37	chr8	113651001	113651001	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgagccctgaaatttccAtagagaccagcattgattgt	8	8	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113651001	G	G	113651001	2	3	175	1	0	0	0	0	0	0	0	1	3980	224	8	5		5	CSMD3	8	113651001	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	375111	113651001	32713021	590	142625											
CSMD3	114788	broad.mit.edu	37	chr8	113842040	113842040	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagcagtaaacagaaacatgCaccttaaatatactgcgttg	7	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113842040	G	G	113842040	1	3	175	0	1	0	0	0	0	0	0	0	3980	725	25	4		4	CSMD3	8	113842040	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	191039	113842040	32521982	591	142626											
EIF3H	8667	broad.mit.edu	37	chr8	117658741	117658741	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgagtccatcctggcaggCggctgtggtggtttgaagag	17	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117658741	A	A	117658741	2	1	175	1	0	0	0	0	0	0	0	1	5060	755	27	3		3	EIF3H	8	117658741	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	3816701	117658741	28705281	592	142627											
EXT1	2131	broad.mit.edu	37	chr8	118830508	118830508	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacccagatttccctgattTgaaagcctattgtggtcaaa	8	9	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118830508	A	A	118830508	1	1	175	0	1	0	0	0	0	0	0	0	5366	1827	63	5		5	EXT1	8	118830508	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1171767	118830508	27533514	593	142628											
HAS2	3037	broad.mit.edu	37	chr8	122626240	122626240	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtctttgttcaagtcccaGcagcagtgatatgtctcctt	8	10	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122626240	T	T	122626240	1	4	175	0	1	0	0	0	0	0	0	0	7028	986	34	3		3	HAS2	8	122626240	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	3795732	122626240	23737782	594	142629											
HAS2	3037	broad.mit.edu	37	chr8	122641020	122641020	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacttctctttttccaccCcatttttgcatgatgcagat	5	11	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122641020	T	T	122641020	4	4	175	1	0	0	0	0	0	1	0	0	7028	624	22	4	1109	4	HAS2	8	122641020	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	14780	122641020	23723002	595	142630											
WISP1	8840	broad.mit.edu	37	chr8	134232797	134232797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggcaccaaggccactgGgcctgaccggccacctgtgt	14	15	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134232797	T	T	134232797	1	4	175	0	1	0	0	0	0	0	0	0	17499	1247	43	2		2	WISP1	8	134232797	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	11591777	134232797	12131225	596	142631											
ST3GAL1	6482	broad.mit.edu	37	chr8	134478232	134478232	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcagcgccggcagcccacCgacctcttctccagcatagg	11	18	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134478232	A	A	134478232	2	1	175	1	0	0	0	0	0	0	0	1	15332	639	23	1		1	ST3GAL1	8	134478232	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	245435	134478232	11885790	597	142632											
KHDRBS3	10656	broad.mit.edu	37	chr8	136657255	136657255	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttattgaatactgttgaaacTcacagccagatgattttgtc	7	7	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136657255	A	A	136657255	1	1	175	0	1	0	0	0	0	0	0	0	8218	1566	54	5		5	KHDRBS3	8	136657255	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	2179023	136657255	9706767	598	142633											
FAM135B	51059	broad.mit.edu	37	chr8	139155396	139155396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgggtatggttgtggcgGgggctgggctttgtgcacag	20	5	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139155396	T	T	139155396	1	4	175	0	1	0	0	0	0	0	0	0	5495	1247	43	2		2	FAM135B	8	139155396	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2498141	139155396	7208626	599	142634											
FAM135B	51059	broad.mit.edu	37	chr8	139164526	139164527	+	Missense_Mutation	DNP	CC	AA	AA													ttgtgttactttctgtgtgtCcaccctctagggagttccgg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	139164527	AA	AA	139164526	3	1	175	1	0	0	0	0	1	0	0	0	5495	855	30	3	2060	3	FAM135B	8	139164526	Missense_Mutation	DNP	CC	TCGA-55-1592-01A-01D-0969-08	9130	139164526	7199496	600	142635											
FAM135B	51059	broad.mit.edu	37	chr8	139380236	139380236	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttcagacatgatctttttGgctcattacctgaaaaacaa	5	8	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139380236	T	T	139380236	1	4	175	0	1	0	0	0	0	0	0	0	5495	1363	47	2		2	FAM135B	8	139380236	5'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	215710	139380236	6983786	601	142636											
COL22A1	169044	broad.mit.edu	37	chr8	139734379	139734380	+	Intron	DNP	GG	TT	TT													aaaaaggaaaggcatatttaGgaaaggcttacattaagttg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	139734380	TT	TT	139734379	1	4	175	0	1	0	0	0	0	0	0	0	3713	1015	35	2		2	COL22A1	8	139734379	Intron	DNP	GG	TCGA-55-1592-01A-01D-0969-08	354143	139734379	6629643	602	142637											
ZNF623	9831	broad.mit.edu	37	chr8	144732931	144732931	+	Frame_Shift_Del	DEL	G	-	-													agtatgaatgcaaagaatgtGggaaggcattccgtcatcgc							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	144732931	-	-	144732931	7	5	175	1	0	1	0	1	0	0	0	0	18174	1348	47	0	891	0	ZNF623	8	144732931	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	4998552	144732931	1631091	603	142638											
CPSF1	29894	broad.mit.edu	37	chr8	145623236	145623236	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtaggagtcactcttcagcAggaacatggtgacgtggccc	13	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145623236	G	G	145623236	3	3	175	1	0	0	0	0	1	0	0	0	3856	188	7	5	2401	5	CPSF1	8	145623236	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	890305	145623236	740786	604	142639											
C9orf68	55064	broad.mit.edu	37	chr9	4625266	4625266	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataactcaaccttcctttcTtccaccctcatccatatcct	0	17	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4625266	A	A	4625266	1	1	175	0	1	0	0	0	0	0	0	0	2517	1624	56	5		5	C9orf68	9	4625266	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08		4625266	136588165	605	142640											
GLDC	2731	broad.mit.edu	37	chr9	6588507	6588507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtccatcaatcaaccctcCattctcccagcatggccacc	4	18	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6588507	A	A	6588507	1	1	175	0	1	0	0	0	0	0	0	0	6497	609	21	2		2	GLDC	9	6588507	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1963241	6588507	134624924	606	142641											
PTPRD	5789	broad.mit.edu	37	chr9	8486043	8486043	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtggtgccttctgagtgaAggttttgagggaatccagtt	14	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8486043	T	T	8486043	3	4	175	1	0	0	0	0	1	0	0	0	12907	72	3	5	3108	5	PTPRD	9	8486043	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1897536	8486043	132727388	607	142642											
PTPLAD2	401494	broad.mit.edu	37	chr9	21011691	21011691	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgataacatgctataagtGtacctgaaaggagatgagaa	10	5	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21011691	T	T	21011691	4	4	175	1	0	0	0	0	0	1	0	0	12882	1372	48	3	323	3	PTPLAD2	9	21011691	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	12525648	21011691	120201740	608	142643											
LINGO2	158038	broad.mit.edu	37	chr9	27949535	27949535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccagcacacataggttGctggccaccaaactgcaggg	13	12	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27949535	T	T	27949535	3	4	175	1	0	0	0	0	1	0	0	0	8888	1328	46	3	689	3	LINGO2	9	27949535	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	6937844	27949535	113263896	609	142644											
KIF24	347240	broad.mit.edu	37	chr9	34257209	34257209	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggagtctcattcgtgagcTgaccctctgggggcctgtac	14	12	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34257209	G	G	34257209	3	3	175	1	0	0	0	0	1	0	0	0	8362	1580	55	5	1722	5	KIF24	9	34257209	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	6307674	34257209	106956222	610	142645											
FANCG	2189	broad.mit.edu	37	chr9	35079414	35079414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatcttgaggctgcaaacCgagggtgccagcaaccgtgt	15	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35079414	A	A	35079414	1	1	175	0	1	0	0	0	0	0	0	0	5725	667	23	1		1	FANCG	9	35079414	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	822205	35079414	106134017	611	142646											
PIGO	84720	broad.mit.edu	37	chr9	35092310	35092310	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcccaggctttccacagaAaagggaggaatgagctcact	11	11	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35092310	C	C	35092310	3	2	175	1	0	0	0	0	1	0	0	0	11989	14	1	5	1715	5	PIGO	9	35092310	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	12896	35092310	106121121	612	142647											
FRMPD1	22844	broad.mit.edu	37	chr9	37724227	37724227	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtgttttccagggtaaTtctctgctgtgtatgcccaa	9	9	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37724227	C	C	37724227	2	2	175	1	0	0	0	0	0	0	0	1	6117	1490	52	5		5	FRMPD1	9	37724227	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	2631917	37724227	103489204	613	142648											
ALDH1B1	219	broad.mit.edu	37	chr9	38396791	38396791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaagcagaggaaagtggGgaacccctttgagctggaca	14	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38396791	T	T	38396791	3	4	175	1	0	0	0	0	1	0	0	0	493	1232	43	2	1048	2	ALDH1B1	9	38396791	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	672564	38396791	102816640	614	142649											
ZNF658	26149	broad.mit.edu	37	chr9	40772612	40772612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcttggagaaagtcttcCcacagtcattacattcatag	7	9	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40772612	A	A	40772612	3	1	175	1	0	0	0	0	1	0	0	0	18196	623	22	2	520	2	ZNF658	9	40772612	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2375821	40772612	100440819	615	142650											
FLJ46321	389763	broad.mit.edu	37	chr9	84607513	84607513	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccgcagaatccatgagtctCtgtcattgctacgtcctcag	8	14	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84607513	T	T	84607513	2	4	175	1	0	0	0	0	0	0	0	1	5990	912	32	4		4	FLJ46321	9	84607513	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	43834901	84607513	56605918	616	142651											
HNRNPK	3190	broad.mit.edu	37	chr9	86592668	86592668	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctagatcttttaaatgctTgttcctcttccatatcttct	3	10	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86592668	C	C	86592668	3	2	175	1	0	0	0	0	1	0	0	0	7336	1812	63	5	1393	5	HNRNPK	9	86592668	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	1985155	86592668	54620763	617	142652											
SPTLC1	10558	broad.mit.edu	37	chr9	94794786	94794786	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctacctccttgatggtggaCgcagctctctccagttcttc	9	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94794786	G	G	94794786	2	3	175	1	0	0	0	0	0	0	0	1	15241	523	19	4		4	SPTLC1	9	94794786	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	8202118	94794786	46418645	618	142653											
COL15A1	1306	broad.mit.edu	37	chr9	101818644	101818644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgatcctgggccaccgGggcccccggggccaccagga	16	16	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101818644	T	T	101818644	3	4	175	1	0	0	0	0	1	0	0	0	3704	1232	43	2	3433	2	COL15A1	9	101818644	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	7023858	101818644	39394787	619	142654											
RNF20	56254	broad.mit.edu	37	chr9	104324449	104324449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgccttgtgggttttcttCttggttgtgtagtatatgag	13	4	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104324449	T	T	104324449	1	4	175	0	1	0	0	0	0	0	0	0	13584	928	32	4		4	RNF20	9	104324449	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2505805	104324449	36888982	620	142655											
GRIN3A	116443	broad.mit.edu	37	chr9	104375693	104375693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctcttgccacagggaaCcaccctgtaccacttgtcat	6	15	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104375693	A	A	104375693	3	1	175	1	0	0	0	0	1	0	0	0	6849	507	18	3	632	3	GRIN3A	9	104375693	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	51244	104375693	36837738	621	142656											
EPB41L4B	54566	broad.mit.edu	37	chr9	111947854	111947854	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggaggagaacagcgagagTgggcacagtgggggttgctg	21	5	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111947854	C	C	111947854	3	2	175	1	0	0	0	0	1	0	0	0	5198	1696	59	5	385	5	EPB41L4B	9	111947854	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	7572161	111947854	29265577	622	142657											
ZFP37	7539	broad.mit.edu	37	chr9	115819008	115819008	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttagcgggtccggcagcCgcgatggcggcgcccttcgg	17	15	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115819008	A	A	115819008	1	1	175	0	1	0	0	0	0	0	0	0	17774	667	23	1		1	ZFP37	9	115819008	5'Flank	SNP	C	TCGA-55-1592-01A-01D-0969-08	3871154	115819008	25394423	623	142658											
PAPPA	5069	broad.mit.edu	37	chr9	119124830	119124830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcttattcaattggggctGgtgtctctcttggtcctaac	10	9	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119124830	T	T	119124830	1	4	175	0	1	0	0	0	0	0	0	0	11526	1363	47	2		2	PAPPA	9	119124830	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3305822	119124830	22088601	624	142659											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123184938	123184938	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcagacctagaaagtcctGggaagtcttcttaacaaatg	8	8	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123184938	A	A	123184938	1	1	175	0	1	0	0	0	0	0	0	0	3176	1363	47	4		4	CDK5RAP2	9	123184938	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4060108	123184938	18028493	625	142660											
CEP110	11064	broad.mit.edu	37	chr9	123920102	123920102	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaacaaaattgtagcAgcaaaagactcagacttcca	6	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123920102	C	C	123920102	2	2	175	1	0	0	0	0	0	0	0	1	3275	175	7	5		5	CEP110	9	123920102	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	735164	123920102	17293329	626	142661											
RABGAP1	23637	broad.mit.edu	37	chr9	125782613	125782613	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacttgaatgtgagaccgAagcagttgtcatccttagta	9	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125782613	T	T	125782613	4	4	175	1	0	0	0	0	0	1	0	0	13072	247	9	5	1715	5	RABGAP1	9	125782613	Nonsense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1862511	125782613	15430818	627	142662											
RAPGEF1	2889	broad.mit.edu	37	chr9	134505753	134505753	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgagcaaagctcccgtcaCcactgagtttccaccagaag	8	13	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134505753	T	T	134505753	1	4	175	0	1	0	0	0	0	0	0	0	13151	522	18	4		4	RAPGEF1	9	134505753	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	8723140	134505753	6707678	628	142663											
SURF4	6836	broad.mit.edu	37	chr9	136230446	136230446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagcaagcccccaatcaCcgacatggtctggaagaagt	11	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136230446	A	A	136230446	3	1	175	1	0	0	0	0	1	0	0	0	15523	507	18	3	80	3	SURF4	9	136230446	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1724693	136230446	4982985	629	142664											
NOTCH1	4851	broad.mit.edu	37	chr9	139396481	139396482	+	Frame_Shift_Ins	INS	-	C	C													cttggtctccaggtcctcgtINSccccccactcattctggttg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139396482	C	C	139396481	7	5	175	1	0	1	1	0	0	0	0	0	10642	1667	58	0	2247	0	NOTCH1	9	139396481	Frame_Shift_Ins	INS	-	TCGA-55-1592-01A-01D-0969-08	3166035	139396481	1816950	630	142665											
ENTPD2	954	broad.mit.edu	37	chr9	139946243	139946243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccttccctgcttaagcCcccagaaacgcccaggttgg	8	17	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139946243	A	A	139946243	1	1	175	0	1	0	0	0	0	0	0	0	5181	638	22	2		2	ENTPD2	9	139946243	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	549762	139946243	1267188	631	142666											
AKR1C4	1109	broad.mit.edu	37	chr10	5239002	5239002	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggttgttcagctttgtgtttCtgttaccctgagtgactcac	10	9	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5239002	A	A	5239002	1	1	175	0	1	0	0	0	0	0	0	0	472	928	32	3		3	AKR1C4	10	5239002	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		5239002	130295745	632	142667											
FBXO18	84893	broad.mit.edu	37	chr10	5956067	5956067	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatccagtttgtatgtttgGtttttggactgtctatcccc	8	8	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5956067	C	C	5956067	1	2	175	0	1	0	0	0	0	0	0	0	5788	1276	44	4		4	FBXO18	10	5956067	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	717065	5956067	129578680	633	142668											
TAF3	83860	broad.mit.edu	37	chr10	8056639	8056639	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgcacccccagaagagatGcagtggttctgccccaagtg	11	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8056639	C	C	8056639	3	2	175	1	0	0	0	0	1	0	0	0	15644	1319	46	4	2741	4	TAF3	10	8056639	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2100572	8056639	127478108	634	142669											
C10orf47	254427	broad.mit.edu	37	chr10	11911910	11911910	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggagccccgcaggaccctGtccagggcggccgtcagcgt	16	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11911910	T	T	11911910	2	4	175	1	0	0	0	0	0	0	0	1	1616	1364	48	3		3	C10orf47	10	11911910	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	3855271	11911910	123622837	635	142670											
RSU1	6251	broad.mit.edu	37	chr10	16794725	16794725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaaactctcatcctctaTgtcctctcttctactaaagc	3	14	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16794725	C	C	16794725	1	2	175	0	1	0	0	0	0	0	0	0	13827	1479	51	5		5	RSU1	10	16794725	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	4882815	16794725	118740022	636	142671											
CUBN	8029	broad.mit.edu	37	chr10	16960851	16960851	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catggtcagatgcttattttGataatgacaaccttacttac	6	8	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16960851	C	C	16960851	1	2	175	0	1	0	0	0	0	0	0	0	4084	1305	45	4		4	CUBN	10	16960851	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	166126	16960851	118573896	637	142672											
CUBN	8029	broad.mit.edu	37	chr10	17152665	17152665	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcccgagtagctaggatTacaagcatgcaccaccatgc	9	14	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17152665	G	G	17152665	1	3	175	0	1	0	0	0	0	0	0	0	4084	1769	61	5		5	CUBN	10	17152665	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	191814	17152665	118382082	638	142673											
TRDMT1	1787	broad.mit.edu	37	chr10	17204079	17204079	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcatgtataaatggctaTcctctacaaaatgacaaacg	8	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17204079	C	C	17204079	1	2	175	0	1	0	0	0	0	0	0	0	16591	1450	50	5		5	TRDMT1	10	17204079	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	51414	17204079	118330668	639	142674											
ARMC3	219681	broad.mit.edu	37	chr10	23292330	23292330	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cataattaacgatggattctAtgattatggtcgggtaagtg	11	4	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23292330	G	G	23292330	3	3	175	1	0	0	0	0	1	0	0	0	956	449	16	5	1764	5	ARMC3	10	23292330	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	6088251	23292330	112242417	640	142675											
GAD2	2572	broad.mit.edu	37	chr10	26570061	26570061	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagtccgtgcgtgggctttGactgtctttatgcggttgac	13	10	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26570061	T	T	26570061	1	4	175	0	1	0	0	0	0	0	0	0	6240	1305	45	3		3	GAD2	10	26570061	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3277731	26570061	108964686	641	142676											
ARMC4	55130	broad.mit.edu	37	chr10	28260243	28260243	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcactgaagctaattccCtttatttaaaaaatgagaat	4	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28260243	A	A	28260243	5	1	175	1	0	0	0	0	0	0	1	0	957	695	24	2	2250	2	ARMC4	10	28260243	Splice_Site	SNP	C	TCGA-55-1592-01A-01D-0969-08	1690182	28260243	107274504	642	142677											
ZEB1	6935	broad.mit.edu	37	chr10	31810791	31810791	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgattccccaggtggcatAcacctactcaactacggtca	7	14	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31810791	G	G	31810791	3	3	175	1	0	0	0	0	1	0	0	0	17749	391	14	5	2568	5	ZEB1	10	31810791	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	3550548	31810791	103723956	643	142678											
CUL2	8453	broad.mit.edu	37	chr10	35327986	35327986	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtattttcgacatcgaatttCttcatcttttaatctaccta	3	9	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35327986	A	A	35327986	4	1	175	1	0	0	0	0	0	1	0	0	4088	922	32	3	1550	3	CUL2	10	35327986	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	3517195	35327986	100206761	644	142679											
OGDHL	55753	broad.mit.edu	37	chr10	50946224	50946224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccctgtcctggggacagCagcaacactcacagggtagg	13	13	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50946224	A	A	50946224	1	1	175	0	1	0	0	0	0	0	0	0	10935	725	25	3		3	OGDHL	10	50946224	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	15618238	50946224	84588523	645	142680											
FAM21A	387680	broad.mit.edu	37	chr10	51892506	51892506	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtggtttgcttgcatgtgTcttaaaagtacctttctcca	9	8	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51892506	G	G	51892506	1	3	175	0	1	0	0	0	0	0	0	0	5587	1682	58	5		5	FAM21A	10	51892506	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	946282	51892506	83642241	646	142681											
ASAH2	56624	broad.mit.edu	37	chr10	52005145	52005145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgctgggtggctgtggagCgttgggcagctgtggagccc	19	8	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52005145	A	A	52005145	3	1	175	1	0	0	0	0	1	0	0	0	1011	768	27	3	2221	3	ASAH2	10	52005145	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	112639	52005145	83529602	647	142682											
PRKG1	5592	broad.mit.edu	37	chr10	54042112	54042112	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaactgctgataaaaataGaccagcatgcagctacacac	9	10	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54042112	A	A	54042112	1	1	175	0	1	0	0	0	0	0	0	0	12628	957	33	4		4	PRKG1	10	54042112	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2036967	54042112	81492635	648	142683											
PCDH15	65217	broad.mit.edu	37	chr10	55591271	55591271	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaagtctttattgatatCaagtagtttgccatccaaaa	6	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55591271	A	A	55591271	3	1	175	1	0	0	0	0	1	0	0	0	11605	826	29	3	3496	3	PCDH15	10	55591271	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1549159	55591271	79943476	649	142684											
PCDH15	65217	broad.mit.edu	37	chr10	56360207	56360207	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgacctagacttaagcccAgcagatgaaaagaaggggga	12	7	0	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56360207	C	C	56360207	1	2	175	0	1	0	0	0	0	0	0	0	11605	203	7	5		5	PCDH15	10	56360207	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	768936	56360207	79174540	650	142685											
ANK3	288	broad.mit.edu	37	chr10	61874084	61874084	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaattcccttgtgaatgtTagatgctgaaaaataaaatg	7	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61874084	C	C	61874084	2	2	175	1	0	0	0	0	0	0	0	1	622	1741	61	5		5	ANK3	10	61874084	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	5513877	61874084	73660663	651	142686											
ANK3	288	broad.mit.edu	37	chr10	62444267	62444267	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatttgcagctggaaatggGgaatggactatcagaccaga	12	6	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62444267	A	A	62444267	1	1	175	0	1	0	0	0	0	0	0	0	622	1247	43	4		4	ANK3	10	62444267	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	570183	62444267	73090480	652	142687											
JMJD1C	221037	broad.mit.edu	37	chr10	64976851	64976851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacttactagaattacaCgactaaaaaccctagagata	4	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64976851	A	A	64976851	1	1	175	0	1	0	0	0	0	0	0	0	8020	551	19	3		3	JMJD1C	10	64976851	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2532584	64976851	70557896	653	142688											
CTNNA3	29119	broad.mit.edu	37	chr10	68535192	68535192	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctgactccatatctctctCttccctcacctgtctgcgaa	4	16	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68535192	G	G	68535192	1	3	175	0	1	0	0	0	0	0	0	0	4048	928	32	4		4	CTNNA3	10	68535192	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3558341	68535192	66999555	654	142689											
HKDC1	80201	broad.mit.edu	37	chr10	71010247	71010247	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcctgccaccctgcatcGatgtccgcctggtgtgaatg	11	15	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71010247	T	T	71010247	1	4	175	0	1	0	0	0	0	0	0	0	7260	1073	37	3		3	HKDC1	10	71010247	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2475055	71010247	64524500	655	142690											
HK1	3098	broad.mit.edu	37	chr10	71075716	71075716	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgtatatccagatggaCtgtgagcacagcctgagttt	13	7	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71075716	T	T	71075716	1	4	175	0	1	0	0	0	0	0	0	0	7257	564	20	4		4	HK1	10	71075716	5'Flank	SNP	C	TCGA-55-1592-01A-01D-0969-08	65469	71075716	64459031	656	142691											
CBARA1	10367	broad.mit.edu	37	chr10	74311183	74311183	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatcactgctcatcaattCtcatatattttccatcctat	1	12	5	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74311183	T	T	74311183	1	4	175	0	1	0	0	0	0	0	0	0	2722	928	32	4		4	CBARA1	10	74311183	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3235467	74311183	61223564	657	142692											
USP54	159195	broad.mit.edu	37	chr10	75289573	75289573	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaggtgagagcctggcCgtgctgggccccagcgcttg	15	12	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75289573	G	G	75289573	3	3	175	1	0	0	0	0	1	0	0	0	17212	652	23	4	3169	4	USP54	10	75289573	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	978390	75289573	60245174	658	142693											
POLR3A	11128	broad.mit.edu	37	chr10	79773360	79773360	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtaagtttcctttgcctcCtttcaaggagctgttatgca	8	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79773360	G	G	79773360	1	3	175	0	1	0	0	0	0	0	0	0	12323	696	24	4		4	POLR3A	10	79773360	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4483787	79773360	55761387	659	142694											
SFTPA1	653509	broad.mit.edu	37	chr10	81372776	81372776	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaataggggaccacggggtGtggagacacactggaatctt	15	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81372776	A	A	81372776	1	1	175	0	1	0	0	0	0	0	0	0	14302	1392	48	4		4	SFTPA1	10	81372776	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1599416	81372776	54161971	660	142695											
CDHR1	92211	broad.mit.edu	37	chr10	85968522	85968522	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacttgcagctggtgggacCcaggggcatcttccgagtgg	15	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85968522	T	T	85968522	3	4	175	1	0	0	0	0	1	0	0	0	3148	623	22	4	1251	4	CDHR1	10	85968522	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	4595746	85968522	49566225	661	142696											
RGR	5995	broad.mit.edu	37	chr10	86007125	86007125	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatccaagtaaagattgaatGagatgactcatataaagtgc	8	5	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86007125	T	T	86007125	1	4	175	0	1	0	0	0	0	0	0	0	13400	1305	45	3		3	RGR	10	86007125	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	38603	86007125	49527622	662	142697											
PAPSS2	9060	broad.mit.edu	37	chr10	89475536	89475536	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcgaaggctgggccactccCctcaaaggtttcatgcggga	13	12	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89475536	G	G	89475536	2	3	175	1	0	0	0	0	0	0	0	1	11529	610	22	4		4	PAPSS2	10	89475536	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	3468411	89475536	46059211	663	142698											
LIPM	340654	broad.mit.edu	37	chr10	90572926	90572926	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggatttccaacctgcccaAcaatagcctgggcttcattc	7	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90572926	T	T	90572926	3	4	175	1	0	0	0	0	1	0	0	0	8901	43	2	5	348	5	LIPM	10	90572926	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1097390	90572926	44961821	664	142699											
MYOF	26509	broad.mit.edu	37	chr10	95216596	95216596	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagataggacaatcagaaaTagcttatctattaaaacaaa	5	5	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95216596	C	C	95216596	1	2	175	0	1	0	0	0	0	0	0	0	10183	1421	49	5		5	MYOF	10	95216596	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	4643670	95216596	40318151	665	142700											
CEP55	55165	broad.mit.edu	37	chr10	95263113	95263113	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcacgaattgctgaacttGaaagcaaaaccaatacactc	5	12	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95263113	C	C	95263113	3	2	175	1	0	0	0	0	1	0	0	0	3285	1291	45	4	433	4	CEP55	10	95263113	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	46517	95263113	40271634	666	142701			2	112		3	3	115	G		9.474588e-06
CEP55	55165	broad.mit.edu	37	chr10	95263188	95263188	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagattttttttttctttctGatacagtttgtaattcttag	5	5	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95263188	C	C	95263188	1	2	175	0	1	0	0	0	0	0	0	0	3285	1305	45	4		4	CEP55	10	95263188	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	75	95263188	40271559	667	142702			2	112		3	3	115	G		9.474588e-06
CEP55	55165	broad.mit.edu	37	chr10	95263227	95263227	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggaggaatgagtttgttaaGacatgcttcccaaatgatga	11	5	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95263227	C	C	95263227	1	2	175	0	1	0	0	0	0	0	0	0	3285	957	33	4		4	CEP55	10	95263227	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	39	95263227	40271520	668	142703			2	112		3	3	115	G		9.474588e-06
CC2D2B	387707	broad.mit.edu	37	chr10	97779094	97779094	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtttgatgatagaaaTgtaagtatatggggaaaaaa	11	0	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97779094	C	C	97779094	2	2	175	1	0	0	0	0	0	0	0	1	2755	1478	51	5		5	CC2D2B	10	97779094	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	2515867	97779094	37755653	669	142704											
COX15	1355	broad.mit.edu	37	chr10	101473134	101473134	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcagttgccactgtcatcTattatattagcaatattggg	7	7	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101473134	C	C	101473134	1	2	175	0	1	0	0	0	0	0	0	0	3796	1537	53	5		5	COX15	10	101473134	3'UTR	SNP	T	TCGA-55-1592-01A-01D-0969-08	3694040	101473134	34061613	670	142705											
C10orf26	54838	broad.mit.edu	37	chr10	104557952	104557952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttttcggattctcttgGggacagtgttggtgagtgga	15	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104557952	T	T	104557952	1	4	175	0	1	0	0	0	0	0	0	0	1610	1247	43	2		2	C10orf26	10	104557952	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3084818	104557952	30976795	671	142706											
CALHM1	255022	broad.mit.edu	37	chr10	105218247	105218247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggggtccttggcccggcGgcccagcggccgcttccact	15	17	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105218247	T	T	105218247	3	4	175	1	0	0	0	0	1	0	0	0	2608	1116	39	1	786	1	CALHM1	10	105218247	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	660295	105218247	30316500	672	142707											
C10orf79	80217	broad.mit.edu	37	chr10	105903388	105903388	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgagtgcgttttctgTttggaaatcctggtattacc	10	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105903388	G	G	105903388	3	3	175	1	0	0	0	0	1	0	0	0	1629	1722	60	5	1071	5	C10orf79	10	105903388	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	685141	105903388	29631359	673	142708											
C10orf79	80217	broad.mit.edu	37	chr10	105951929	105951929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttgaaataatcaatattTtaaattaatcagcattctat	2	5	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105951929	A	A	105951929	1	1	175	0	1	0	0	0	0	0	0	0	1629	1856	64	5		5	C10orf79	10	105951929	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	48541	105951929	29582818	674	142709											
CCDC147	159686	broad.mit.edu	37	chr10	106125438	106125438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggctcaaggatgtctgCcctataggggaaatgctact	13	9	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106125438	A	A	106125438	1	1	175	0	1	0	0	0	0	0	0	0	2807	754	26	3		3	CCDC147	10	106125438	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	173509	106125438	29409309	675	142710											
CCDC147	159686	broad.mit.edu	37	chr10	106130883	106130883	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttatcttgtaacccaggGctccatgtttccaaacacaa	6	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106130883	A	A	106130883	1	1	175	0	1	0	0	0	0	0	0	0	2807	1218	42	4		4	CCDC147	10	106130883	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5445	106130883	29403864	676	142711											
ADD3	120	broad.mit.edu	37	chr10	111878333	111878333	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagttaaatatgtccttctGattttttccaggtgaaagtc	7	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111878333	A	A	111878333	1	1	175	0	1	0	0	0	0	0	0	0	306	1305	45	4		4	ADD3	10	111878333	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5747450	111878333	23656414	677	142712											
VTI1A	143187	broad.mit.edu	37	chr10	114428028	114428028	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtcatgacagagaaaagaTacagcgagcacgtgaaagag	12	6	1	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114428028	A	A	114428028	3	1	175	1	0	0	0	0	1	0	0	0	17362	1406	49	5	501	5	VTI1A	10	114428028	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	2549695	114428028	21106719	678	142713											
TCF7L2	6934	broad.mit.edu	37	chr10	114925681	114925681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacattcccacagctccctgGccgggacccagccccagccg	9	20	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114925681	T	T	114925681	3	4	175	1	0	0	0	0	1	0	0	0	15820	1203	42	3	2090	3	TCF7L2	10	114925681	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	497653	114925681	20609066	679	142714											
ATRNL1	26033	broad.mit.edu	37	chr10	117040877	117040877	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtagtctgtcaagaacTacaccaaatgtcatgtgaga	8	7	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117040877	A	A	117040877	3	1	175	1	0	0	0	0	1	0	0	0	1211	1522	53	5	2167	5	ATRNL1	10	117040877	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	2115196	117040877	18493870	680	142715											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118203902	118203902	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtgccaggtgttgctAcagctggaagatataaattg	11	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118203902	G	G	118203902	2	3	175	1	0	0	0	0	0	0	0	1	12247	378	14	5		5	PNLIPRP3	10	118203902	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	1163025	118203902	17330845	681	142716											
PNLIP	5406	broad.mit.edu	37	chr10	118327209	118327209	+	Intron	DEL	G	-	-													cacactccagatatgtgccaGgaagaggaggtgactttgtg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118327209	-	-	118327209	6	5	175	0	1	1	0	1	0	0	0	0	12244	1015	35	0		0	PNLIP	10	118327209	Intron	DEL	G	TCGA-55-1592-01A-01D-0969-08	123307	118327209	17207538	682	142717											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118380531	118380531	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaggggatttggcagggcGggggcagcccaggctacaag	19	9	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118380531	A	A	118380531	1	1	175	0	1	0	0	0	0	0	0	0	12246	1131	39	4		4	PNLIPRP2	10	118380531	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	53322	118380531	17154216	683	142718											
GRK5	2869	broad.mit.edu	37	chr10	121093434	121093434	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaaagatctatccccacttCcctggaggaagtggcgtccc	10	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121093434	T	T	121093434	1	4	175	0	1	0	0	0	0	0	0	0	6858	870	30	4		4	GRK5	10	121093434	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2712903	121093434	14441313	684	142719											
DMBT1	1755	broad.mit.edu	37	chr10	124344982	124344982	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtctctggggacccagctGtgggtctgatgttggaggct	17	8	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124344982	C	C	124344982	1	2	175	0	1	0	0	0	0	0	0	0	4617	1392	48	4		4	DMBT1	10	124344982	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3251548	124344982	11189765	685	142720											
MKI67	4288	broad.mit.edu	37	chr10	129907466	129907466	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctgtatattcctgaactCtgtagaccttcctgacctgt	6	12	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129907466	A	A	129907466	4	1	175	1	0	0	0	0	0	1	0	0	9691	922	32	3	7144	3	MKI67	10	129907466	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5562484	129907466	5627281	686	142721											
STK32C	282974	broad.mit.edu	37	chr10	134059451	134059451	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgaaggatctggaagtggtCgaagttcactgcaggataaa	13	7	2	0	rs142282211		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134059451	A	A	134059451	3	1	175	1	0	0	0	0	1	0	0	0	15417	884	31	3	1233	3	STK32C	10	134059451	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	4151985	134059451	1475296	687	142722											
PSMD13	5719	broad.mit.edu	37	chr11	239175	239175	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taataataataagctccaatAttcagcagtcactttacgtc	4	9	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	239175	G	G	239175	1	3	175	0	1	0	0	0	0	0	0	0	12802	464	16	5		5	PSMD13	11	239175	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08		239175	134767341	688	142723											
MUC5B	727897	broad.mit.edu	37	chr11	1158282	1158282	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggctgactgaggcccctgtCctgggccgctgaggctggct	16	13	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1158282	A	A	1158282	1	1	175	0	1	0	0	0	0	0	0	0	10073	870	30	3		3	MUC5B	11	1158282	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	919107	1158282	133848234	689	142724											
MUC5B	727897	broad.mit.edu	37	chr11	1215494	1215494	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctgcggtgcggaggacGggctctcctgcccgaggtcc	15	14	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1215494	T	T	1215494	1	4	175	0	1	0	0	0	0	0	0	0	10073	1131	39	1		1	MUC5B	11	1215494	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	57212	1215494	133791022	690	142725											
MUC5B	727897	broad.mit.edu	37	chr11	1262071	1262071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggacccctttcccatgCcccttgcaggcccggccctc	9	21	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1262071	A	A	1262071	1	1	175	0	1	0	0	0	0	0	0	0	10073	754	26	3		3	MUC5B	11	1262071	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	46577	1262071	133744445	691	142726											
LSP1	4046	broad.mit.edu	37	chr11	1905419	1905419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatgatataagggttggGggttggattagtggttggag	17	4	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1905419	T	T	1905419	1	4	175	0	1	0	0	0	0	0	0	0	9150	1247	43	2		2	LSP1	11	1905419	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	643348	1905419	133101097	692	142727											
INS-IGF2	723961	broad.mit.edu	37	chr11	2170331	2170331	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgcagcttttctctcacActcaagggatgggagcccag	11	11	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2170331	G	G	2170331	1	3	175	0	1	0	0	0	0	0	0	0	7833	174	6	5		5	INS-IGF2	11	2170331	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	264912	2170331	132836185	693	142728											
OR51E1	143503	broad.mit.edu	37	chr11	4674113	4674113	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaatccacagtgctgctGgccatggcttttgaccgcta	11	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4674113	T	T	4674113	2	4	175	1	0	0	0	0	0	0	0	1	11188	1335	47	2		2	OR51E1	11	4674113	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	2503782	4674113	130332403	694	142729											
OR56A4	120793	broad.mit.edu	37	chr11	6024118	6024118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggccaggaggaagagaagGctgaggggcagagacaacca	17	7	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6024118	T	T	6024118	3	4	175	1	0	0	0	0	1	0	0	0	11229	1194	42	3	838	3	OR56A4	11	6024118	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1350005	6024118	128982398	695	142730											
OR52B2	255725	broad.mit.edu	37	chr11	6190952	6190952	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgacaatgggcactgagAagccataccaaatgttaaca	8	10	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6190952	G	G	6190952	3	3	175	1	0	0	0	0	1	0	0	0	11205	246	9	5	369	5	OR52B2	11	6190952	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	166834	6190952	128815564	696	142731											
DCHS1	8642	broad.mit.edu	37	chr11	6661983	6661983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctcgtaagtcacagcccCattgacaccagcatcggcat	8	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6661983	A	A	6661983	3	1	175	1	0	0	0	0	1	0	0	0	4320	594	21	2	9114	2	DCHS1	11	6661983	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	471031	6661983	128344533	697	142732											
MRPL17	63875	broad.mit.edu	37	chr11	6704014	6704014	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatgcgcatggctcgttcGttagtgtctcccagcttccc	10	15	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6704014	C	C	6704014	3	2	175	1	0	0	0	0	1	0	0	0	9876	1136	40	4	328	4	MRPL17	11	6704014	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	42031	6704014	128302502	698	142733											
OR6A2	8590	broad.mit.edu	37	chr11	6816486	6816486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacctccagcccaagagcCagcagccatctgcacacaca	6	17	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6816486	A	A	6816486	3	1	175	1	0	0	0	0	1	0	0	0	11280	594	21	2	533	2	OR6A2	11	6816486	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	112472	6816486	128190030	699	142734											
OR10A3	26496	broad.mit.edu	37	chr11	7961052	7961052	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaattcaaccacacagctttGattttgtcttttcatttcag	5	9	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7961052	A	A	7961052	4	1	175	1	0	0	0	0	0	1	0	0	10985	1299	45	4	931	4	OR10A3	11	7961052	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1144566	7961052	127045464	700	142735											
PDE3B	5140	broad.mit.edu	37	chr11	14810570	14810570	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatatactttgtattgaTactttcatgtgccatcacta	4	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14810570	A	A	14810570	1	1	175	0	1	0	0	0	0	0	0	0	11732	1421	49	5		5	PDE3B	11	14810570	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	6849518	14810570	120195946	701	142736											
ABCC8	6833	broad.mit.edu	37	chr11	17448584	17448584	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccactgggccctgaggaTacatgtattacctgctccag	9	14	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17448584	C	C	17448584	1	2	175	0	1	0	0	0	0	0	0	0	58	1421	49	5		5	ABCC8	11	17448584	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	2638014	17448584	117557932	702	142737											
ABCC8	6833	broad.mit.edu	37	chr11	17464965	17464965	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctagagtgggacaagcctTggtgcccaggtttccaaatt	11	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17464965	A	A	17464965	1	1	175	0	1	0	0	0	0	0	0	0	58	1827	63	5		5	ABCC8	11	17464965	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	16381	17464965	117541551	703	142738											
SAA2	6289	broad.mit.edu	37	chr11	18267162	18267162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagggctcagagaggagCccagaaaggccaaggaagga	18	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18267162	A	A	18267162	1	1	175	0	1	0	0	0	0	0	0	0	13910	754	26	3		3	SAA2	11	18267162	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	802197	18267162	116739354	704	142739											
PRMT3	10196	broad.mit.edu	37	chr11	20414614	20414614	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaacggcaaaatggaggtaGagtgttttaggaaaagacat	12	3	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20414614	T	T	20414614	1	4	175	0	1	0	0	0	0	0	0	0	12644	957	33	3		3	PRMT3	11	20414614	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2147452	20414614	114591902	705	142740											
ANO5	203859	broad.mit.edu	37	chr11	22283597	22283597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaatgatgtgactagatGttcacttgtcctagggagta	11	7	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22283597	T	T	22283597	1	4	175	0	1	0	0	0	0	0	0	0	700	1392	48	3		3	ANO5	11	22283597	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1868983	22283597	112722919	706	142741											
ANO3	63982	broad.mit.edu	37	chr11	26621324	26621324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaggggagaggtctatGtttcctttatatttgaaatg	12	3	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26621324	T	T	26621324	1	4	175	0	1	0	0	0	0	0	0	0	698	1392	48	3		3	ANO3	11	26621324	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4337727	26621324	108385192	707	142742											
METT5D1	196074	broad.mit.edu	37	chr11	28135220	28135220	+	Intron	DEL	T	-	-													acttattgtaatattcattaTtttaaggtatacaattcagt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28135220	-	-	28135220	6	5	175	0	1	1	0	1	0	0	0	0	9585	1508	52	0		0	METT5D1	11	28135220	Intron	DEL	T	TCGA-55-1592-01A-01D-0969-08	1513896	28135220	106871296	708	142743											
FSHB	2488	broad.mit.edu	37	chr11	30255202	30255202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacgaaacagtgagagtgcCcggctgtgctcaccatgcag	12	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30255202	A	A	30255202	3	1	175	1	0	0	0	0	1	0	0	0	6132	623	22	2	251	2	FSHB	11	30255202	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2119982	30255202	104751314	709	142744											
DCDC1	341019	broad.mit.edu	37	chr11	31312213	31312214	+	Missense_Mutation	DNP	CC	AA	AA													cctttttcattgtttcttttCccactgtaatctcatgccca							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31312214	AA	AA	31312213	3	1	175	1	0	0	0	0	1	0	0	0	4317	855	30	3	135	3	DCDC1	11	31312213	Missense_Mutation	DNP	CC	TCGA-55-1592-01A-01D-0969-08	1057011	31312213	103694303	710	142745											
WT1	7490	broad.mit.edu	37	chr11	32413610	32413610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacactggaatggtttcacaCctaaatggacagagaaggtc	10	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32413610	A	A	32413610	3	1	175	1	0	0	0	0	1	0	0	0	17535	521	18	3	221	3	WT1	11	32413610	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1101397	32413610	102592906	711	142746											
CD44	960	broad.mit.edu	37	chr11	35218483	35218483	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agccttgaataattttgattGacctctgggatgttattaaa	8	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35218483	C	C	35218483	1	2	175	0	1	0	0	0	0	0	0	0	3047	1305	45	4		4	CD44	11	35218483	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2804873	35218483	99788033	712	142747											
CD44	960	broad.mit.edu	37	chr11	35222804	35222804	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagcccatgatgctgcaaAggtcaatcatcgaggcacag	10	11	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35222804	G	G	35222804	1	3	175	0	1	0	0	0	0	0	0	0	3047	87	3	5		5	CD44	11	35222804	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4321	35222804	99783712	713	142748											
SLC1A2	6506	broad.mit.edu	37	chr11	35333830	35333830	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctggacacttcatcaTtcttcttcccaggccccagc	7	17	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35333830	C	C	35333830	3	2	175	1	0	0	0	0	1	0	0	0	14545	1493	52	5	1280	5	SLC1A2	11	35333830	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	111026	35333830	99672686	714	142749											
EXT2	2132	broad.mit.edu	37	chr11	44097136	44097136	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggccacggtgctgtgtgagGccgggggtaagtgagctctg	19	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44097136	C	C	44097136	3	2	175	1	0	0	0	0	1	0	0	0	5367	1203	42	4		4	EXT2	11	44097136	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	8763306	44097136	90909380	715	142750											
CRY2	1408	broad.mit.edu	37	chr11	45891801	45891801	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctctgaccactgtggcctCctactaggatgggataccct	10	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45891801	G	G	45891801	1	3	175	0	1	0	0	0	0	0	0	0	3936	870	30	4		4	CRY2	11	45891801	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1794665	45891801	89114715	716	142751											
PEX16	9409	broad.mit.edu	37	chr11	45935204	45935204	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctgatggcccagagagcTctgcgggcgggactgggctg	19	11	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45935204	G	G	45935204	1	3	175	0	1	0	0	0	0	0	0	0	11838	1566	54	5		5	PEX16	11	45935204	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	43403	45935204	89071312	717	142752											
MADD	8567	broad.mit.edu	37	chr11	47314115	47314115	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtggaacaagcaccaggAagtgaaaaagcaaaaagctt	10	6	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47314115	C	C	47314115	3	2	175	1	0	0	0	0	1	0	0	0	9240	246	9	5	3461	5	MADD	11	47314115	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1378911	47314115	87692401	718	142753											
MYBPC3	4607	broad.mit.edu	37	chr11	47361035	47361035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgctgcttcttccaccCcctgacccacactgcccacc	4	23	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47361035	A	A	47361035	1	1	175	0	1	0	0	0	0	0	0	0	10107	638	22	2		2	MYBPC3	11	47361035	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	46920	47361035	87645481	719	142754											
FOLH1	2346	broad.mit.edu	37	chr11	49227540	49227540	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaagtccagttcctaTatataaaatattggaccaaa	5	6	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49227540	C	C	49227540	1	2	175	0	1	0	0	0	0	0	0	0	6037	1421	49	5		5	FOLH1	11	49227540	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1866505	49227540	85778976	720	142755											
OR4S2	219431	broad.mit.edu	37	chr11	55418305	55418305	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttggttctgcgttagaaatAaaataaatacagtccttttt	7	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55418305	T	T	55418305	1	4	175	0	1	0	0	0	0	0	0	0	11177	377	13	5		5	OR4S2	11	55418305	5'Flank	SNP	A	TCGA-55-1592-01A-01D-0969-08	6190765	55418305	79588211	721	142756											
SPRYD5	84767	broad.mit.edu	37	chr11	55648590	55648590	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagacctaccagccacatAggattattcctggattgtga	8	11	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55648590	T	T	55648590	1	4	175	0	1	0	0	0	0	0	0	0	15229	435	15	5		5	SPRYD5	11	55648590	5'Flank	SNP	A	TCGA-55-1592-01A-01D-0969-08	230285	55648590	79357926	722	142757											
SPRYD5	84767	broad.mit.edu	37	chr11	55653326	55653326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgccgggtaagtgatgCctctgaagatctatttctat	11	8	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55653326	A	A	55653326	1	1	175	0	1	0	0	0	0	0	0	0	15229	754	26	3		3	SPRYD5	11	55653326	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4736	55653326	79353190	723	142758											
OR8K5	219453	broad.mit.edu	37	chr11	55927514	55927514	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcagcacatgcataatAggaaatagtatttcgatcca	8	8	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55927514	T	T	55927514	3	4	175	1	0	0	0	0	1	0	0	0	11339	420	15	5	646	5	OR8K5	11	55927514	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	274188	55927514	79079002	724	142759											
SSRP1	6749	broad.mit.edu	37	chr11	57105907	57105907	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaggctccccattcctcCaacccctctaagctgccccc	6	21	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57105907	A	A	57105907	1	1	175	0	1	0	0	0	0	0	0	0	15312	609	21	2		2	SSRP1	11	57105907	5'Flank	SNP	C	TCGA-55-1592-01A-01D-0969-08	1178393	57105907	77900609	725	142760											
FAM111B	374393	broad.mit.edu	37	chr11	58891882	58891882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcatatggtaaacccagCgagagtatctactcagccct	8	12	2	1	rs150852006		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58891882	A	A	58891882	3	1	175	1	0	0	0	0	1	0	0	0	5446	767	27	3	318	3	FAM111B	11	58891882	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1785975	58891882	76114634	726	142761											
OR5A2	219981	broad.mit.edu	37	chr11	59190132	59190132	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagacaaagtactgagtggCacagccaacaaaggaaatgg	12	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59190132	G	G	59190132	3	3	175	1	0	0	0	0	1	0	0	0	11234	710	25	4	681	4	OR5A2	11	59190132	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	298250	59190132	75816384	727	142762											
MS4A4A	51338	broad.mit.edu	37	chr11	60068593	60068593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaataaaaaatgtattctgCcagggtgtaaaacaggtttt	8	4	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60068593	A	A	60068593	1	1	175	0	1	0	0	0	0	0	0	0	9956	754	26	3		3	MS4A4A	11	60068593	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	878461	60068593	74937923	728	142763											
MS4A7	58475	broad.mit.edu	37	chr11	60150636	60150636	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctattacaatcccaaaccAtgggggtttctcacagcttt	7	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60150636	G	G	60150636	3	3	175	1	0	0	0	0	1	0	0	0	9960	217	8	5	24	5	MS4A7	11	60150636	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	82043	60150636	74855880	729	142764											
MS4A5	64232	broad.mit.edu	37	chr11	60198329	60198329	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagttatcttccttttcaccTtgttaaaaccatatccaagg	5	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60198329	A	A	60198329	3	1	175	1	0	0	0	0	1	0	0	0	9957	1606	56	5	220	5	MS4A5	11	60198329	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	47693	60198329	74808187	730	142765											
DDB1	1642	broad.mit.edu	37	chr11	61077340	61077340	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatacaccattgctgtgcCcacaatgaagtaagtgttgg	11	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61077340	T	T	61077340	3	4	175	1	0	0	0	0	1	0	0	0	4356	623	22	4	960	4	DDB1	11	61077340	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	879011	61077340	73929176	731	142766											
C11orf48	79081	broad.mit.edu	37	chr11	62430634	62430634	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttgaaggggcttccactGagtaaagggaagaaggaagt	15	5	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62430634	T	T	62430634	1	4	175	0	1	0	0	0	0	0	0	0	1656	1305	45	3		3	C11orf48	11	62430634	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1353294	62430634	72575882	732	142767											
HRASLS2	54979	broad.mit.edu	37	chr11	63326318	63326318	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttggagaaggtccctaaGttctggtttcctcatttcta	8	9	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63326318	A	A	63326318	1	1	175	0	1	0	0	0	0	0	0	0	7417	1044	36	4		4	HRASLS2	11	63326318	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	895684	63326318	71680198	733	142768											
SIPA1	6494	broad.mit.edu	37	chr11	65417993	65417993	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagtcacagggctgcccCaggaaaggggctggcggctc	19	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65417993	T	T	65417993	1	4	175	0	1	0	0	0	0	0	0	0	14441	609	21	4		4	SIPA1	11	65417993	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2091675	65417993	69588523	734	142769											
KRTAP5-11	440051	broad.mit.edu	37	chr11	71293630	71293630	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcagggcttacagcagttgGactgggagcagccacaagaa	14	9	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71293630	A	A	71293630	3	1	175	1	0	0	0	0	1	0	0	0	8632	1174	41	4	220	4	KRTAP5-11	11	71293630	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	5875637	71293630	63712886	735	142770											
C2CD3	26005	broad.mit.edu	37	chr11	73825446	73825446	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccgcttttttgctgtagtCaccttaggtggtggaccagc	11	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73825446	T	T	73825446	2	4	175	1	0	0	0	0	0	0	0	1	2176	813	29	4		4	C2CD3	11	73825446	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2531816	73825446	61181070	736	142771											
GDPD4	220032	broad.mit.edu	37	chr11	76954630	76954630	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagattcaaaggagataaccAcacacagaaattccgagatg	9	8	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76954630	T	T	76954630	1	4	175	0	1	0	0	0	0	0	0	0	6390	174	6	5		5	GDPD4	11	76954630	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	3129184	76954630	58051886	737	142772											
NARS2	79731	broad.mit.edu	37	chr11	78204159	78204159	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaatctctgcttctatcaTataaaactctgccaggtgcc	6	11	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78204159	C	C	78204159	3	2	175	1	0	0	0	0	1	0	0	0	10265	1406	49	5	693	5	NARS2	11	78204159	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	1249529	78204159	56802357	738	142773											
DLG2	1740	broad.mit.edu	37	chr11	83173087	83173087	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgttctagcttaattgctcGatcataggttttcttggctt	8	7	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83173087	C	C	83173087	3	2	175	1	0	0	0	0	1	0	0	0	4595	1066	37	4	156	4	DLG2	11	83173087	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	4968928	83173087	51833429	739	142774											
GRM5	2915	broad.mit.edu	37	chr11	88780375	88780375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgatgtatgcaaaggaaaCttaccttctgtgtgcacggc	10	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88780375	A	A	88780375	1	1	175	0	1	0	0	0	0	0	0	0	6866	580	20	3		3	GRM5	11	88780375	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5607288	88780375	46226141	740	142775											
CCDC67	159989	broad.mit.edu	37	chr11	93118676	93118676	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagagaattattaaaaatagGagagtgccaaaatgctcaag	9	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93118676	C	C	93118676	3	2	175	1	0	0	0	0	1	0	0	0	2867	1174	41	4	928	4	CCDC67	11	93118676	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	4338301	93118676	41887840	741	142776											
PIWIL4	143689	broad.mit.edu	37	chr11	94322291	94322291	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttatatttggcagatacAataacagaacctactccatt	4	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94322291	G	G	94322291	3	3	175	1	0	0	0	0	1	0	0	0	12055	130	5	5	949	5	PIWIL4	11	94322291	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1203615	94322291	40684225	742	142777											
CNTN5	53942	broad.mit.edu	37	chr11	99690425	99690425	+	Frame_Shift_Del	DEL	G	-	-													gagtgcttcttcacccagctGgctaggggcagctcagaatt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99690425	-	-	99690425	7	5	175	1	0	1	0	1	0	0	0	0	3676	1357	47	0	212	0	CNTN5	11	99690425	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	5368134	99690425	35316091	743	142778											
ANGPTL5	253935	broad.mit.edu	37	chr11	101765536	101765536	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatacaaagacaaatgcattAtttttatcttcacttaataa	2	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101765536	G	G	101765536	1	3	175	0	1	0	0	0	0	0	0	0	617	464	16	5		5	ANGPTL5	11	101765536	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2075111	101765536	33240980	744	142779											
CWF19L2	143884	broad.mit.edu	37	chr11	107207336	107207336	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgggaagaggaatacatTcataaaccatgtgatactgt	9	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107207336	G	G	107207336	3	3	175	1	0	0	0	0	1	0	0	0	4105	1783	62	5	394	5	CWF19L2	11	107207336	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	5441800	107207336	27799180	745	142780											
NPAT	4863	broad.mit.edu	37	chr11	108040747	108040747	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggagtacaggctggactgGagaggcaattattatggcag	15	5	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108040747	C	C	108040747	3	2	175	1	0	0	0	0	1	0	0	0	10661	1174	41	4	1494	4	NPAT	11	108040747	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	833411	108040747	26965769	746	142781											
ZC3H12C	85463	broad.mit.edu	37	chr11	110035851	110035851	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccgttcctgcagaatttcCacgaccccttaaccagaggg	8	14	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110035851	T	T	110035851	3	4	175	1	0	0	0	0	1	0	0	0	17689	594	21	4	2063	4	ZC3H12C	11	110035851	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1995104	110035851	24970665	747	142782											
ZW10	9183	broad.mit.edu	37	chr11	113644495	113644495	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgggaaacggagtctcgCgggcctcagaccgccgcccg	15	16	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113644495	A	A	113644495	1	1	175	0	1	0	0	0	0	0	0	0	18376	783	27	3		3	ZW10	11	113644495	5'Flank	SNP	C	TCGA-55-1592-01A-01D-0969-08	3608644	113644495	21362021	748	142783											
FAM55D	54827	broad.mit.edu	37	chr11	114453150	114453150	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctctgttgtccaggtactgGcacaattcagcatttgtgtt	9	9	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114453150	C	C	114453150	3	2	175	1	0	0	0	0	1	0	0	0	5638	1195	42	4	960	4	FAM55D	11	114453150	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	808655	114453150	20553366	749	142784											
DSCAML1	57453	broad.mit.edu	37	chr11	117308768	117308768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacatccttccactcctcGctgttgtccaccgagtactg	6	16	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117308768	T	T	117308768	3	4	175	1	0	0	0	0	1	0	0	0	4809	1078	38	3	1922	3	DSCAML1	11	117308768	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2855618	117308768	17697748	750	142785											
TMPRSS13	84000	broad.mit.edu	37	chr11	117789096	117789096	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgggctgcttcccatctctCgtggcttccctacagcatcc	8	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117789096	A	A	117789096	1	1	175	0	1	0	0	0	0	0	0	0	16368	899	31	3		3	TMPRSS13	11	117789096	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	480328	117789096	17217420	751	142786											
IL10RA	3587	broad.mit.edu	37	chr11	117870171	117870171	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaacgggacagtggaacCagcccactgaggaatggtca	12	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117870171	A	A	117870171	3	1	175	1	0	0	0	0	1	0	0	0	7690	595	21	2	1578	2	IL10RA	11	117870171	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	81075	117870171	17136345	752	142787											
MLL	4297	broad.mit.edu	37	chr11	118366733	118366733	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaattttcaggtcatccttaAatgtaataccatcattaatt	4	7	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118366733	T	T	118366733	1	4	175	0	1	0	0	0	0	0	0	0	9713	29	1	5		5	MLL	11	118366733	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	496562	118366733	16639783	753	142788											
FOXR1	283150	broad.mit.edu	37	chr11	118851198	118851198	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctctcctccctgtccatAgaaagcacttcccctttttc	3	17	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118851198	G	G	118851198	5	3	175	1	0	0	0	0	0	0	1	0	6091	434	15	5	628	5	FOXR1	11	118851198	Splice_Site	SNP	A	TCGA-55-1592-01A-01D-0969-08	484465	118851198	16155318	754	142789											
DPAGT1	1798	broad.mit.edu	37	chr11	118971090	118971090	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtacagaacactgccagCagccccatgtagacatagta	9	11	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118971090	A	A	118971090	2	1	175	1	0	0	0	0	0	0	0	1	4750	697	25	3		3	DPAGT1	11	118971090	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	119892	118971090	16035426	755	142790											
POU2F3	25833	broad.mit.edu	37	chr11	120175882	120175882	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagctggagaagtttgccaaGaccttcaagcagaggcgcat	13	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120175882	A	A	120175882	2	1	175	1	0	0	0	0	0	0	0	1	12369	933	33	4		4	POU2F3	11	120175882	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	1204792	120175882	14830634	756	142791											
HSPA8	3312	broad.mit.edu	37	chr11	122930824	122930824	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcacaaatggtacatacCtttttgtctaagccgtaagc	7	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122930824	T	T	122930824	2	4	175	1	0	0	0	0	0	0	0	1	7485	695	24	4		4	HSPA8	11	122930824	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2754942	122930824	12075692	757	142792											
SCN3B	55800	broad.mit.edu	37	chr11	123516161	123516161	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactaaggctgtcagttatcTgctgaggatctgtcagtgtt	11	8	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123516161	A	A	123516161	1	1	175	0	1	0	0	0	0	0	0	0	14032	1595	55	5		5	SCN3B	11	123516161	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	585337	123516161	11490355	758	142793											
OR10G4	390264	broad.mit.edu	37	chr11	123887150	123887150	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgttgtgtacaccctgaGaaacaaggaggtgaagaaag	12	8	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123887150	A	A	123887150	3	1	175	1	0	0	0	0	1	0	0	0	10995	942	33	4	871	4	OR10G4	11	123887150	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	370989	123887150	11119366	759	142794											
ETS1	2113	broad.mit.edu	37	chr11	128358978	128358978	+	Intron	DEL	C	-	-													gctgaagattaatatctgaaCccccaatatgtagaagaaaa							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128358978	-	-	128358978	6	5	175	0	1	1	0	1	0	0	0	0	5317	522	18	0		0	ETS1	11	128358978	Intron	DEL	C	TCGA-55-1592-01A-01D-0969-08	4471828	128358978	6647538	760	142795											
ST14	6768	broad.mit.edu	37	chr11	130058061	130058061	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgccagtcaacaacgtcaAgaaggtggaaaagcatggcc	11	11	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130058061	G	G	130058061	3	3	175	1	0	0	0	0	1	0	0	0	15329	72	3	5	140	5	ST14	11	130058061	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1699083	130058061	4948455	761	142796											
VPS26B	112936	broad.mit.edu	37	chr11	134095249	134095249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcagatcggtgagtcgaCccccgggaccccctccccca	12	19	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134095249	T	T	134095249	1	4	175	0	1	0	0	0	0	0	0	0	17325	522	18	4		4	VPS26B	11	134095249	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4037188	134095249	911267	762	142797											
GLB1L3	112937	broad.mit.edu	37	chr11	134147821	134147821	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacgtgagtgccggcccCtcacctccaggatctcgtta	9	17	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134147821	A	A	134147821	1	1	175	0	1	0	0	0	0	0	0	0	6494	696	24	2		2	GLB1L3	11	134147821	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	52572	134147821	858695	763	142798											
GLB1L3	112937	broad.mit.edu	37	chr11	134182050	134182050	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccctcatcaccatgcccTgcatttccctgagtttcctt	5	17	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134182050	C	C	134182050	1	2	175	0	1	0	0	0	0	0	0	0	6494	1595	55	5		5	GLB1L3	11	134182050	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	34229	134182050	824466	764	142799											
GLB1L2	89944	broad.mit.edu	37	chr11	134240907	134240907	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttctgtacgcagccaatCaagtctgaaaagcccatcaa	6	13	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134240907	G	G	134240907	3	3	175	1	0	0	0	0	1	0	0	0	6493	816	29	4	1271	4	GLB1L2	11	134240907	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	58857	134240907	765609	765	142800											
SLC6A12	6539	broad.mit.edu	37	chr12	307848	307848	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatattttctaatttatctCcagtgggcatttattgcttt	5	8	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	307848	A	A	307848	1	1	175	0	1	0	0	0	0	0	0	0	14789	870	30	3		3	SLC6A12	12	307848	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		307848	133544047	766	142801											
WNK1	65125	broad.mit.edu	37	chr12	970256	970256	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacagagtatcattaattaaGaggaaacgagagcagcggca	12	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	970256	C	C	970256	3	2	175	1	0	0	0	0	1	0	0	0	17504	933	33	4	1724	4	WNK1	12	970256	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	662408	970256	132881639	767	142802											
CACNA1C	775	broad.mit.edu	37	chr12	2602685	2602685	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggaatggttgatgaagagCgtctttgatttcttccaggt	12	5	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2602685	G	G	2602685	1	3	175	0	1	0	0	0	0	0	0	0	2566	783	27	4		4	CACNA1C	12	2602685	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1632429	2602685	131249210	768	142803											
CACNA1C	775	broad.mit.edu	37	chr12	2675528	2675528	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccatggtgctgcatcttgGgttggaggaaacctgaattc	13	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2675528	A	A	2675528	1	1	175	0	1	0	0	0	0	0	0	0	2566	1247	43	4		4	CACNA1C	12	2675528	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	72843	2675528	131176367	769	142804											
TEAD4	7004	broad.mit.edu	37	chr12	3120264	3120264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagacgggtaggggtcccGggggtggtaccccagcacca	17	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3120264	T	T	3120264	1	4	175	0	1	0	0	0	0	0	0	0	15863	1131	39	1		1	TEAD4	12	3120264	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	444736	3120264	130731631	770	142805											
KCNA6	3742	broad.mit.edu	37	chr12	4920328	4920328	+	Frame_Shift_Del	DEL	G	-	-													gaccttgcaggcctccatgaGggagctggggctgctcatct							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4920328	-	-	4920328	7	5	175	1	0	1	0	1	0	0	0	0	8077	1000	35	0	1123	0	KCNA6	12	4920328	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	1800064	4920328	128931567	771	142806											
VWF	7450	broad.mit.edu	37	chr12	6166949	6166949	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagcactgcctccggaacGcactgcactaatgtggagac	13	12	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6166949	A	A	6166949	1	1	175	0	1	0	0	0	0	0	0	0	17373	1102	38	4		4	VWF	12	6166949	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1246621	6166949	127684946	772	142807											
ENO2	2026	broad.mit.edu	37	chr12	7031662	7031662	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagggcctggataacagtcCatttcctggataacagtcca	9	11	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7031662	G	G	7031662	1	3	175	0	1	0	0	0	0	0	0	0	5164	609	21	4		4	ENO2	12	7031662	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	864713	7031662	126820233	773	142808											
PZP	5858	broad.mit.edu	37	chr12	9344799	9344799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatactcactgtctcctgaCtccacaggcagagtgtgggt	12	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9344799	A	A	9344799	3	1	175	1	0	0	0	0	1	0	0	0	12977	564	20	3	3008	3	PZP	12	9344799	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2313137	9344799	124507096	774	142809											
KLRF1	51348	broad.mit.edu	37	chr12	9994733	9994733	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatctggcccaaattcatatAttcaacttgcaattgtgtgt	7	8	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9994733	T	T	9994733	1	4	175	0	1	0	0	0	0	0	0	0	8491	464	16	5		5	KLRF1	12	9994733	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	649934	9994733	123857162	775	142810											
CLEC7A	64581	broad.mit.edu	37	chr12	10280406	10280406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcataggattcccaaaattaCagcaatgaggcgccaaggag	11	9	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10280406	T	T	10280406	3	4	175	1	0	0	0	0	1	0	0	0	3553	478	17	4	657	4	CLEC7A	12	10280406	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	285673	10280406	123571489	776	142811											
TAS2R8	50836	broad.mit.edu	37	chr12	10959722	10959722	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgacgttgttattcttccGgaagtgttcagctctcctct	8	11	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10959722	A	A	10959722	1	1	175	0	1	0	0	0	0	0	0	0	15706	1131	39	4		4	TAS2R8	12	10959722	5'Flank	SNP	G	TCGA-55-1592-01A-01D-0969-08	679316	10959722	122892173	777	142812											
PIK3C2G	5288	broad.mit.edu	37	chr12	18577623	18577623	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaaaagatgctattccTgagaaggcttgtcagttgga	11	6	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18577623	A	A	18577623	1	1	175	0	1	0	0	0	0	0	0	0	12006	1595	55	5		5	PIK3C2G	12	18577623	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	7617901	18577623	115274272	778	142813											
GYS2	2998	broad.mit.edu	37	chr12	21728645	21728645	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccatttaatttgcagaatGctcaacatttcctcagattt	4	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21728645	A	A	21728645	1	1	175	0	1	0	0	0	0	0	0	0	6978	1334	46	4		4	GYS2	12	21728645	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3151022	21728645	112123250	779	142814											
C12orf11	55726	broad.mit.edu	37	chr12	27078802	27078802	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacttaaagagaaatttttGacttaaaatttaagaataca	5	3	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27078802	A	A	27078802	1	1	175	0	1	0	0	0	0	0	0	0	1688	1305	45	4		4	C12orf11	12	27078802	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5350157	27078802	106773093	780	142815											
C12orf11	55726	broad.mit.edu	37	chr12	27081463	27081463	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taagtctttattttagaatgGaacacagcctcaatattaaa	5	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27081463	A	A	27081463	1	1	175	0	1	0	0	0	0	0	0	0	1688	1189	41	4		4	C12orf11	12	27081463	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2661	27081463	106770432	781	142816											
C12orf11	55726	broad.mit.edu	37	chr12	27081513	27081513	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaaaagaaaaaaatcaGaaaggccacttgtaatatgc	6	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27081513	A	A	27081513	1	1	175	0	1	0	0	0	0	0	0	0	1688	957	33	4		4	C12orf11	12	27081513	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	50	27081513	106770382	782	142817											
FAR2	55711	broad.mit.edu	37	chr12	29486613	29486613	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgccctcttccttatcgcCtggcgccttctcattgcaag	7	16	2	0	rs142204438	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29486613	T	T	29486613	2	4	175	1	0	0	0	0	0	0	0	1	5732	668	24	4		4	FAR2	12	29486613	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2405100	29486613	104365282	783	142818											
H3F3C	440093	broad.mit.edu	37	chr12	31944658	31944658	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaccaaagtattttacagAatttactacaaaatgccata	3	7	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31944658	C	C	31944658	1	2	175	0	1	0	0	0	0	0	0	0	7001	261	9	5		5	H3F3C	12	31944658	3'UTR	SNP	A	TCGA-55-1592-01A-01D-0969-08	2458045	31944658	101907237	784	142819											
KIF21A	55605	broad.mit.edu	37	chr12	39701384	39701384	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taccttttaagatcccacatCctgacagcatttccagaagc	5	13	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39701384	G	G	39701384	3	3	175	1	0	0	0	0	1	0	0	0	8358	854	30	4	619	4	KIF21A	12	39701384	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	7756726	39701384	94150511	785	142820											
KIF21A	55605	broad.mit.edu	37	chr12	39716581	39716581	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcccttctgcaacaggtGtgagagggccaggcaaggag	15	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39716581	A	A	39716581	3	1	175	1	0	0	0	0	1	0	0	0	8358	1377	48	4	1512	4	KIF21A	12	39716581	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	15197	39716581	94135314	786	142821											
C12orf40	283461	broad.mit.edu	37	chr12	40040706	40040706	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaggtgagatttttaaaaAaattctataggttatttcag	7	4	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40040706	T	T	40040706	1	4	175	0	1	0	0	0	0	0	0	0	1699	29	1	5		5	C12orf40	12	40040706	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	324125	40040706	93811189	787	142822											
C12orf40	283461	broad.mit.edu	37	chr12	40041818	40041818	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttagcattttatataatTatattttcatgaaactcttt	2	5	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40041818	A	A	40041818	1	1	175	0	1	0	0	0	0	0	0	0	1699	1769	61	5		5	C12orf40	12	40041818	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1112	40041818	93810077	788	142823											
CNTN1	1272	broad.mit.edu	37	chr12	41419200	41419200	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggattcaatcatgatacGaatatatttgaaggaaattt	7	4	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41419200	T	T	41419200	1	4	175	0	1	0	0	0	0	0	0	0	3672	1073	37	3		3	CNTN1	12	41419200	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1377382	41419200	92432695	789	142824											
PDZRN4	29951	broad.mit.edu	37	chr12	41961506	41961506	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gataaaaggaactcgtcgggCaccggccatttaagtttact	10	9	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41961506	G	G	41961506	1	3	175	0	1	0	0	0	0	0	0	0	11804	725	25	4		4	PDZRN4	12	41961506	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	542306	41961506	91890389	790	142825											
ADAMTS20	80070	broad.mit.edu	37	chr12	43770516	43770516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcttaaggccataaaatcCaagtctccttttcttagacc	4	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43770516	A	A	43770516	1	1	175	0	1	0	0	0	0	0	0	0	266	609	21	2		2	ADAMTS20	12	43770516	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1809010	43770516	90081379	791	142826											
ADAMTS20	80070	broad.mit.edu	37	chr12	43856734	43856734	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgttccatctgctggtggCacgtgttgagtgaaacagcc	12	10	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43856734	T	T	43856734	2	4	175	1	0	0	0	0	0	0	0	1	266	697	25	4		4	ADAMTS20	12	43856734	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	86218	43856734	89995161	792	142827											
DBX2	440097	broad.mit.edu	37	chr12	45410296	45410296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagagcagaccgtgagaGgggatcctcttgaagaccta	12	11	1	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45410296	T	T	45410296	3	4	175	1	0	0	0	0	1	0	0	0	4293	1000	35	2	230	2	DBX2	12	45410296	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1553562	45410296	88441599	793	142828											
SFRS2IP	9169	broad.mit.edu	37	chr12	46316238	46316238	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatactccactaaagccaTaacttactttatctactgct	2	13	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46316238	C	C	46316238	1	2	175	0	1	0	0	0	0	0	0	0	14290	1421	49	5		5	SFRS2IP	12	46316238	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	905942	46316238	87535657	794	142829											
SLC38A1	81539	broad.mit.edu	37	chr12	46601279	46601279	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatccaccagaattagtttCaagttatgtaaagaaaagca	6	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46601279	T	T	46601279	1	4	175	0	1	0	0	0	0	0	0	0	14715	841	29	4		4	SLC38A1	12	46601279	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	285041	46601279	87250616	795	142830											
SLC38A1	81539	broad.mit.edu	37	chr12	46601534	46601534	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaaactcacacaaatagtCattttggccttcaggggtta	7	10	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46601534	T	T	46601534	1	4	175	0	1	0	0	0	0	0	0	0	14715	841	29	4		4	SLC38A1	12	46601534	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	255	46601534	87250361	796	142831											
TMEM106C	79022	broad.mit.edu	37	chr12	48358151	48358151	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccatatgtggaattcacCgggagagatagcatcacctg	10	10	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48358151	T	T	48358151	2	4	175	1	0	0	0	0	0	0	0	1	16145	639	23	4		4	TMEM106C	12	48358151	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1756617	48358151	85493744	797	142832											
COL2A1	1280	broad.mit.edu	37	chr12	48376677	48376677	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggaggccacggggacccTggaggccctgggcaccggga	20	13	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48376677	C	C	48376677	3	2	175	1	0	0	0	0	1	0	0	0	3719	1580	55	5	2404	5	COL2A1	12	48376677	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	18526	48376677	85475218	798	142833											
WNT10B	7480	broad.mit.edu	37	chr12	49362003	49362003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccactgcccttccagccaCagccacagctcaccagcttg	6	20	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49362003	A	A	49362003	3	1	175	1	0	0	0	0	1	0	0	0	17510	478	17	3	740	3	WNT10B	12	49362003	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	985326	49362003	84489892	799	142834											
TROAP	10024	broad.mit.edu	37	chr12	49719372	49719372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagagctgtcacctgggGcgccagcctagtctggctaa	14	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49719372	T	T	49719372	2	4	175	1	0	0	0	0	0	0	0	1	16700	1190	42	3		3	TROAP	12	49719372	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	357369	49719372	84132523	800	142835											
KRT73	319101	broad.mit.edu	37	chr12	53009027	53009027	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttagcccagcacccactgCtgggggactgaagggaaccc	12	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53009027	T	T	53009027	1	4	175	0	1	0	0	0	0	0	0	0	8557	812	28	4		4	KRT73	12	53009027	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3289655	53009027	80842868	801	142836											
TENC1	23371	broad.mit.edu	37	chr12	53449281	53449281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggacccctatgccctgtcCcctttccaccctgcccatct	5	22	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53449281	A	A	53449281	1	1	175	0	1	0	0	0	0	0	0	0	15880	638	22	2		2	TENC1	12	53449281	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	440254	53449281	80402614	802	142837											
MAP3K12	7786	broad.mit.edu	37	chr12	53881317	53881317	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgctgggttcacagtagCcccgctggaggtaacacttg	15	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53881317	G	G	53881317	1	3	175	0	1	0	0	0	0	0	0	0	9338	754	26	4		4	MAP3K12	12	53881317	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	432036	53881317	79970578	803	142838											
HOXC8	3224	broad.mit.edu	37	chr12	54404855	54404855	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaaacgtaaccagactgGggttttcttctgtccagctc	8	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54404855	T	T	54404855	1	4	175	0	1	0	0	0	0	0	0	0	7383	1247	43	2		2	HOXC8	12	54404855	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	523538	54404855	79447040	804	142839											
NCKAP1L	3071	broad.mit.edu	37	chr12	54914811	54914811	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgggtaggaatcttctgTaagattcaggcaagggatga	14	4	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54914811	C	C	54914811	1	2	175	0	1	0	0	0	0	0	0	0	10317	1653	57	5		5	NCKAP1L	12	54914811	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	509956	54914811	78937084	805	142840											
NCKAP1L	3071	broad.mit.edu	37	chr12	54925558	54925558	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgctaaagcgcatgaccatCattggggttatcctcagttt	10	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54925558	G	G	54925558	3	3	175	1	0	0	0	0	1	0	0	0	10317	816	29	4	2828	4	NCKAP1L	12	54925558	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	10747	54925558	78926337	806	142841											
SILV	6490	broad.mit.edu	37	chr12	56347975	56347975	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctgtcaactccaggaaaAtcacagcatcatatgagagt	7	9	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56347975	G	G	56347975	1	3	175	0	1	0	0	0	0	0	0	0	14435	116	4	5		5	SILV	12	56347975	3'UTR	SNP	A	TCGA-55-1592-01A-01D-0969-08	1422417	56347975	77503920	807	142842											
SLC35E3	55508	broad.mit.edu	37	chr12	69140237	69140237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctgctggtgtccatctGcattgtgttcctcaacaaat	7	12	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69140237	T	T	69140237	3	4	175	1	0	0	0	0	1	0	0	0	14700	1319	46	3	82	3	SLC35E3	12	69140237	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	12792262	69140237	64711658	808	142843											
PTPRR	5801	broad.mit.edu	37	chr12	71139815	71139815	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggatctcctggtttttctCtttgtcttgtcttaaggaaa	9	7	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71139815	A	A	71139815	4	1	175	1	0	0	0	0	0	1	0	0	12918	922	32	3	1219	3	PTPRR	12	71139815	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1999578	71139815	62712080	809	142844											
TRHDE	29953	broad.mit.edu	37	chr12	72955931	72955931	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgaattacaattacaattTtatattcttgtaggattatt	4	3	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72955931	A	A	72955931	1	1	175	0	1	0	0	0	0	0	0	0	16603	1856	64	5		5	TRHDE	12	72955931	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1816116	72955931	60895964	810	142845											
KCNC2	3747	broad.mit.edu	37	chr12	75444633	75444633	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagccaggaaaattatcagCagcaaaaattcattagtact	7	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75444633	A	A	75444633	2	1	175	1	0	0	0	0	0	0	0	1	8085	697	25	3		3	KCNC2	12	75444633	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2488702	75444633	58407262	811	142846											
OSBPL8	114882	broad.mit.edu	37	chr12	76786490	76786490	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtacgtttaagaagactaGaacatttcaaagccaactcc	6	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76786490	A	A	76786490	3	1	175	1	0	0	0	0	1	0	0	0	11377	942	33	4	1929	4	OSBPL8	12	76786490	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1341857	76786490	57065405	812	142847											
MYF5	4617	broad.mit.edu	37	chr12	81112271	81112271	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacctaacaattcagcctAtaagattctgttcttgctga	5	10	4	2	rs150399452	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81112271	G	G	81112271	1	3	175	0	1	0	0	0	0	0	0	0	10121	464	16	5		5	MYF5	12	81112271	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4325781	81112271	52739624	813	142848											
PPFIA2	8499	broad.mit.edu	37	chr12	81747128	81747128	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagatttcacctgaatggtGaatgaaaaaatgcagaatat	9	4	1	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81747128	T	T	81747128	1	4	175	0	1	0	0	0	0	0	0	0	12406	1305	45	3		3	PPFIA2	12	81747128	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	634857	81747128	52104767	814	142849											
TMTC2	160335	broad.mit.edu	37	chr12	83424682	83424682	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtggttgatagttttttttCcatgtcccccacatttacta	6	9	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83424682	A	A	83424682	1	1	175	0	1	0	0	0	0	0	0	0	16384	870	30	3		3	TMTC2	12	83424682	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1677554	83424682	50427213	815	142850											
MGAT4C	25834	broad.mit.edu	37	chr12	86373677	86373677	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcttgataaaacattaatAaaaaatgggccaaacgtggg	8	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86373677	G	G	86373677	3	3	175	1	0	0	0	0	1	0	0	0	9640	372	13	5	613	5	MGAT4C	12	86373677	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2948995	86373677	47478218	816	142851											
ANO4	121601	broad.mit.edu	37	chr12	101295492	101295492	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacggcgaagtgtggcaagcCgcccagcgtcacgtcgtcgc	14	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101295492	T	T	101295492	1	4	175	0	1	0	0	0	0	0	0	0	699	667	23	4		4	ANO4	12	101295492	5'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	14921815	101295492	32556403	817	142852											
SLC5A8	160728	broad.mit.edu	37	chr12	101576622	101576622	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagagacctttctgagagcGatctgaagtaaggtttgatt	11	6	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101576622	A	A	101576622	3	1	175	1	0	0	0	0	1	0	0	0	14785	1059	37	4	736	4	SLC5A8	12	101576622	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	281130	101576622	32275273	818	142853											
CHPT1	56994	broad.mit.edu	37	chr12	102122825	102122825	+	3'UTR	DEL	A	-	-													agtgttatacctatttcagcAaataaaatatttcattgctt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102122825	-	-	102122825	6	5	175	0	1	1	0	1	0	0	0	0	3401	145	5	0		0	CHPT1	12	102122825	3'UTR	DEL	A	TCGA-55-1592-01A-01D-0969-08	546203	102122825	31729070	819	142854											
STAB2	55576	broad.mit.edu	37	chr12	104098343	104098343	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttttaccaagggaagatGtaggacatgctcctcagagc	12	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104098343	A	A	104098343	3	1	175	1	0	0	0	0	1	0	0	0	15356	1377	48	4	3993	4	STAB2	12	104098343	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1975518	104098343	29753552	820	142855											
KIAA1033	23325	broad.mit.edu	37	chr12	105538144	105538144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatttaaagctggatgaccGaaaccctttcaaagttggca	8	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105538144	T	T	105538144	3	4	175	1	0	0	0	0	1	0	0	0	8276	1058	37	3	2172	3	KIAA1033	12	105538144	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1439801	105538144	28313751	821	142856											
CMKLR1	1240	broad.mit.edu	37	chr12	108686656	108686656	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagggggataagtcctcCaaaaccacaatggagtctaa	9	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108686656	T	T	108686656	2	4	175	1	0	0	0	0	0	0	0	1	3611	593	21	4		4	CMKLR1	12	108686656	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	3148512	108686656	25165239	822	142857											
GIT2	9815	broad.mit.edu	37	chr12	110429605	110429605	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagtggcagggataccagcAggttgctataccgccagatg	13	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110429605	C	C	110429605	1	2	175	0	1	0	0	0	0	0	0	0	6461	203	7	5		5	GIT2	12	110429605	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1742949	110429605	23422290	823	142858											
HVCN1	84329	broad.mit.edu	37	chr12	111099066	111099066	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggcaacgtcaggggctGcagctctgccttcctcgcct	13	15	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111099066	A	A	111099066	3	1	175	1	0	0	0	0	1	0	0	0	7532	1319	46	4	632	4	HVCN1	12	111099066	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	669461	111099066	22752829	824	142859											
LHX5	64211	broad.mit.edu	37	chr12	113906217	113906217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaggatgacactgcgggCggacggatcgggaaggggac	19	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113906217	A	A	113906217	1	1	175	0	1	0	0	0	0	0	0	0	8846	783	27	3		3	LHX5	12	113906217	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2807151	113906217	19945678	825	142860											
CCDC64	92558	broad.mit.edu	37	chr12	120510566	120510566	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgagatggtccttaccccAcaggagctggctggtgggag	15	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120510566	C	C	120510566	1	2	175	0	1	0	0	0	0	0	0	0	2863	174	6	5		5	CCDC64	12	120510566	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	6604349	120510566	13341329	826	142861											
DHX37	57647	broad.mit.edu	37	chr12	125435313	125435313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctttgaaaaggacggagCtggggtggatgaagacaggg	18	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125435313	A	A	125435313	3	1	175	1	0	0	0	0	1	0	0	0	4550	797	28	3	591	3	DHX37	12	125435313	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	4924747	125435313	8416582	827	142862											
TMEM132D	121256	broad.mit.edu	37	chr12	129694057	129694057	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcaggggcggggaggtgtCaacttgccttaatcacgtct	14	10	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129694057	A	A	129694057	1	1	175	0	1	0	0	0	0	0	0	0	16170	841	29	3		3	TMEM132D	12	129694057	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4258744	129694057	4157838	828	142863											
TMEM132D	121256	broad.mit.edu	37	chr12	130184285	130184285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgataacacagcttttctgGtcaaacagcttctggaaaac	8	10	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130184285	T	T	130184285	1	4	175	0	1	0	0	0	0	0	0	0	16170	1276	44	3		3	TMEM132D	12	130184285	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	490228	130184285	3667610	829	142864											
ANKLE2	23141	broad.mit.edu	37	chr12	133331681	133331681	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcatctggattcagaaGtttcaatcgagccaacagag	10	8	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133331681	C	C	133331681	3	2	175	1	0	0	0	0	1	0	0	0	633	1029	36	4	2644	4	ANKLE2	12	133331681	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3147396	133331681	520214	830	142865											
HSPH1	10808	broad.mit.edu	37	chr13	31714483	31714483	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggttaattccagtcttctAgttaactcaagctaaattct	5	8	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31714483	G	G	31714483	1	3	175	0	1	0	0	0	0	0	0	0	7501	435	15	5		5	HSPH1	13	31714483	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08		31714483	83455395	831	142866											
RXFP2	122042	broad.mit.edu	37	chr13	32376218	32376218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatagcattgactgcaaagtGttatttgtattttatgtcta	7	4	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32376218	A	A	32376218	1	1	175	0	1	0	0	0	0	0	0	0	13871	1392	48	4		4	RXFP2	13	32376218	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	661735	32376218	82793660	832	142867											
FRY	10129	broad.mit.edu	37	chr13	32776615	32776615	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcacttgccctcttgtcAtgtgagctggccaggatgta	12	10	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32776615	T	T	32776615	2	4	175	1	0	0	0	0	0	0	0	1	6123	204	8	5		5	FRY	13	32776615	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	400397	32776615	82393263	833	142868											
PDS5B	23047	broad.mit.edu	37	chr13	33252926	33252926	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagatttaacacatgtctGtttctcttattttgaagctc	5	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33252926	A	A	33252926	1	1	175	0	1	0	0	0	0	0	0	0	11786	1392	48	4		4	PDS5B	13	33252926	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	476311	33252926	81916952	834	142869											
NBEA	26960	broad.mit.edu	37	chr13	36202192	36202192	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtactaagttttgatggtctCtcatttctttcttgactcat	6	8	5	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36202192	T	T	36202192	1	4	175	0	1	0	0	0	0	0	0	0	10281	928	32	4		4	NBEA	13	36202192	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2949266	36202192	78967686	835	142870											
DCLK1	9201	broad.mit.edu	37	chr13	36700141	36700141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgagcgtctgcagcgtgCgggtgcggtagaagctgcag	18	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36700141	A	A	36700141	3	1	175	1	0	0	0	0	1	0	0	0	4324	768	27	3	2123	3	DCLK1	13	36700141	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	497949	36700141	78469737	836	142871											
SPG20	23111	broad.mit.edu	37	chr13	36909952	36909952	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcaggttctccattttGtggctcttgctccatttctg	8	11	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36909952	C	C	36909952	3	2	175	1	0	0	0	0	1	0	0	0	15160	1386	48	4	2016	4	SPG20	13	36909952	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	209811	36909952	78259926	837	142872											
TRPC4	7223	broad.mit.edu	37	chr13	38266459	38266459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagctgttgacaattgGgctgggcaacaaactaaaca	10	10	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38266459	T	T	38266459	3	4	175	1	0	0	0	0	1	0	0	0	16705	1232	43	2	2069	2	TRPC4	13	38266459	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1356507	38266459	76903419	838	142873											
CPB2	1361	broad.mit.edu	37	chr13	46658490	46658490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaacaatctacagtttaaGgggcaaaattgataaaatta	8	4	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46658490	T	T	46658490	1	4	175	0	1	0	0	0	0	0	0	0	3829	1015	35	2		2	CPB2	13	46658490	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	8392031	46658490	68511388	839	142874											
PCDH17	27253	broad.mit.edu	37	chr13	58241008	58241008	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttacaaagtgtaaagcttaAgcagtcattataaacctatt	5	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58241008	T	T	58241008	1	4	175	0	1	0	0	0	0	0	0	0	11606	87	3	5		5	PCDH17	13	58241008	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	11582518	58241008	56928870	840	142875											
PCDH9	5101	broad.mit.edu	37	chr13	67799482	67799482	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catactggcacgttaatactGgttgactgggcacttgtatg	11	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67799482	C	C	67799482	1	2	175	0	1	0	0	0	0	0	0	0	11612	1363	47	4		4	PCDH9	13	67799482	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	9558474	67799482	47370396	841	142876											
EDNRB	1910	broad.mit.edu	37	chr13	78492316	78492316	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atattgggaccgtttcgcatGcacttgttcttgtagataat	9	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78492316	C	C	78492316	3	2	175	1	0	0	0	0	1	0	0	0	4960	1311	46	4	1084	4	EDNRB	13	78492316	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	10692834	78492316	36677562	842	142877											
GPR180	160897	broad.mit.edu	37	chr13	95273308	95273308	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattgtgaaaacttggttgAcgttggttttcatgtcccat	9	6	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95273308	C	C	95273308	1	2	175	0	1	0	0	0	0	0	0	0	6741	290	10	5		5	GPR180	13	95273308	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	16780992	95273308	19896570	843	142878											
ERCC5	2073	broad.mit.edu	37	chr13	103501801	103501801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattgtttggtgtatatcCctagggtcttggatatgcct	11	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103501801	A	A	103501801	1	1	175	0	1	0	0	0	0	0	0	0	5258	638	22	2		2	ERCC5	13	103501801	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	8228493	103501801	11668077	844	142879											
SLC10A2	6555	broad.mit.edu	37	chr13	103703714	103703714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggagcaatgatccaggcGctttggtacaatattcctcc	10	10	0	1	rs140050923		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103703714	T	T	103703714	3	4	175	1	0	0	0	0	1	0	0	0	14487	1078	38	3	404	3	SLC10A2	13	103703714	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	201913	103703714	11466164	845	142880											
MYO16	23026	broad.mit.edu	37	chr13	109550579	109550579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacactgtgtatgaatcaaTgctgggagagaaaacctatt	9	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109550579	A	A	109550579	1	1	175	0	1	0	0	0	0	0	0	0	10158	1479	51	5		5	MYO16	13	109550579	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	5846865	109550579	5619299	846	142881											
COL4A1	1282	broad.mit.edu	37	chr13	110827815	110827815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacaagaacgtgaatcccCcacaaccagccaagattgag	8	12	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110827815	A	A	110827815	1	1	175	0	1	0	0	0	0	0	0	0	3721	638	22	2		2	COL4A1	13	110827815	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1277236	110827815	4342063	847	142882											
ING1	3621	broad.mit.edu	37	chr13	111371525	111371525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccgtccggggccgtgtgGgttgtcccggtgtcctgctc	16	14	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111371525	T	T	111371525	1	4	175	0	1	0	0	0	0	0	0	0	7805	1247	43	2		2	ING1	13	111371525	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	543710	111371525	3798353	848	142883											
TEP1	7011	broad.mit.edu	37	chr14	20859894	20859894	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctagggcctgtcggtacCtgttcagcatctcaccatca	8	14	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20859894	G	G	20859894	3	3	175	1	0	0	0	0	1	0	0	0	15881	681	24	4	6094	4	TEP1	14	20859894	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08		20859894	86489646	849	142884											
TEP1	7011	broad.mit.edu	37	chr14	20871392	20871392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaccacatgcctttccCagtgctctcagaaccttacc	4	15	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20871392	A	A	20871392	1	1	175	0	1	0	0	0	0	0	0	0	15881	609	21	2		2	TEP1	14	20871392	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	11498	20871392	86478148	850	142885											
JUB	84962	broad.mit.edu	37	chr14	23445718	23445718	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctcagctgcctcctgaaAccctgaaaactaaagtaaaa	5	11	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23445718	T	T	23445718	3	4	175	1	0	0	0	0	1	0	0	0	8038	43	2	5	450	5	JUB	14	23445718	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2574326	23445718	83903822	851	142886											
MYH6	4624	broad.mit.edu	37	chr14	23851669	23851669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacggctcttggctcgaaGcttgttgacctgggactcag	13	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23851669	T	T	23851669	3	4	175	1	0	0	0	0	1	0	0	0	10132	971	34	3	63	3	MYH6	14	23851669	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	405951	23851669	83497871	852	142887											
MYH7	4625	broad.mit.edu	37	chr14	23882919	23882919	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgagggtgctctgtctgGgtatgcctgctgtgggggtg	19	6	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23882919	C	C	23882919	1	2	175	0	1	0	0	0	0	0	0	0	10133	1247	43	4		4	MYH7	14	23882919	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	31250	23882919	83466621	853	142888											
MYH7	4625	broad.mit.edu	37	chr14	23892939	23892939	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggtttttcacctgccgAccaagaatcccatctccttt	6	14	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23892939	T	T	23892939	1	4	175	0	1	0	0	0	0	0	0	0	10133	290	10	5		5	MYH7	14	23892939	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	10020	23892939	83456601	854	142889											
SCFD1	23256	broad.mit.edu	37	chr14	31103135	31103135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataaaaaaataagttttaGttccttatgtcttctaggct	6	5	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31103135	T	T	31103135	1	4	175	0	1	0	0	0	0	0	0	0	14001	1044	36	3		3	SCFD1	14	31103135	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	7210196	31103135	76246405	855	142890											
FAM179B	23116	broad.mit.edu	37	chr14	45490111	45490111	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtacagggattgaaatAtgtggcctgtagtgcagggg	16	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45490111	T	T	45490111	1	4	175	0	1	0	0	0	0	0	0	0	5551	464	16	5		5	FAM179B	14	45490111	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	14386976	45490111	61859429	856	142891											
PRPF39	55015	broad.mit.edu	37	chr14	45571881	45571881	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtattccaacacagctgtAtagtcatcattttcagaggt	8	8	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45571881	G	G	45571881	3	3	175	1	0	0	0	0	1	0	0	0	12675	449	16	5	733	5	PRPF39	14	45571881	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	81770	45571881	61777659	857	142892											
FKBP3	2287	broad.mit.edu	37	chr14	45603642	45603642	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccacggtccacgcccgctgTggaacggccgccgccatctt	11	18	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45603642	A	A	45603642	2	1	175	1	0	0	0	0	0	0	0	1	5966	1683	59	5		5	FKBP3	14	45603642	Silent	SNP	T	TCGA-55-1592-01A-01D-0969-08	31761	45603642	61745898	858	142893											
PYGL	5836	broad.mit.edu	37	chr14	51390574	51390574	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaaatatattctattattCaaaacacgacatgccctata	2	9	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51390574	G	G	51390574	1	3	175	0	1	0	0	0	0	0	0	0	12969	841	29	4		4	PYGL	14	51390574	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5786932	51390574	55958966	859	142894											
OTX2	5015	broad.mit.edu	37	chr14	57268677	57268677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgggactgagtgtggcccCtggtccgggaagctggtgat	17	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57268677	T	T	57268677	3	4	175	1	0	0	0	0	1	0	0	0	11415	681	24	4	227	4	OTX2	14	57268677	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5878103	57268677	50080863	860	142895											
PLEKHH1	57475	broad.mit.edu	37	chr14	68045396	68045396	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgagcactgccaactgCcgcatgaataagagggatga	11	10	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68045396	T	T	68045396	1	4	175	0	1	0	0	0	0	0	0	0	12171	754	26	4		4	PLEKHH1	14	68045396	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	10776719	68045396	39304144	861	142896											
SLC10A1	6554	broad.mit.edu	37	chr14	70244996	70244996	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaacttgcttgttggcagGctcaggtctaatattggagc	12	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70244996	T	T	70244996	1	4	175	0	1	0	0	0	0	0	0	0	14486	1218	42	3		3	SLC10A1	14	70244996	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2199600	70244996	37104544	862	142897											
MAP3K9	4293	broad.mit.edu	37	chr14	71197442	71197442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgcggccgaggcagaaaCtccagagtcttgggtctctc	14	12	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71197442	A	A	71197442	3	1	175	1	0	0	0	0	1	0	0	0	9349	564	20	3	348	3	MAP3K9	14	71197442	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	952446	71197442	36152098	863	142898											
RGS6	9628	broad.mit.edu	37	chr14	72985274	72985274	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctactcaagtggttgtcaTaaggtgttcatttgtcccct	8	9	4	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72985274	A	A	72985274	1	1	175	0	1	0	0	0	0	0	0	0	13418	1421	49	5		5	RGS6	14	72985274	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1787832	72985274	34364266	864	142899											
NUMB	8650	broad.mit.edu	37	chr14	73743882	73743882	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctgaggcctggggctgctGagcccggacgctcttagaca	15	12	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73743882	A	A	73743882	4	1	175	1	0	0	0	0	0	1	0	0	10846	1299	45	4	599	4	NUMB	14	73743882	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	758608	73743882	33605658	865	142900											
C14orf169	79697	broad.mit.edu	37	chr14	73959323	73959323	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcgctgggaggctggagaAcctgtaaacgtgggggccca	16	9	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73959323	T	T	73959323	3	4	175	1	0	0	0	0	1	0	0	0	1771	43	2	5	1603	5	C14orf169	14	73959323	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	215441	73959323	33390217	866	142901											
LIN52	91750	broad.mit.edu	37	chr14	74567682	74567682	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggaattttgcaatagtggGaaaattccctgatttgtgtg	12	4	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74567682	T	T	74567682	1	4	175	0	1	0	0	0	0	0	0	0	8881	1189	41	3		3	LIN52	14	74567682	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	608359	74567682	32781858	867	142902											
C14orf115	55237	broad.mit.edu	37	chr14	74825598	74825598	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accctggtagatggctgacaGggaggtacaaaaggggctgg	17	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74825598	A	A	74825598	1	1	175	0	1	0	0	0	0	0	0	0	1753	1015	35	4		4	C14orf115	14	74825598	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	257916	74825598	32523942	868	142903											
LTBP2	4053	broad.mit.edu	37	chr14	74975375	74975375	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagaagaaagacccgtggCtgttgaggcactcgccgtgg	15	10	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74975375	T	T	74975375	3	4	175	1	0	0	0	0	1	0	0	0	9161	797	28	4	1933	4	LTBP2	14	74975375	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	149777	74975375	32374165	869	142904											
ANGEL1	23357	broad.mit.edu	37	chr14	77257782	77257782	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcagaacctttcaccctaAaatccctctcagatccttga	4	14	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77257782	C	C	77257782	1	2	175	0	1	0	0	0	0	0	0	0	608	29	1	5		5	ANGEL1	14	77257782	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2282407	77257782	30091758	870	142905											
NRXN3	9369	broad.mit.edu	37	chr14	79434538	79434538	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctctatatggctggtctGgcccaaggcatgtacagcaa	11	10	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79434538	T	T	79434538	2	4	175	1	0	0	0	0	0	0	0	1	10762	1335	47	2		2	NRXN3	14	79434538	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	2176756	79434538	27915002	871	142906											
NRXN3	9369	broad.mit.edu	37	chr14	80328143	80328143	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcctcctgtacgccatgTacaagtacaggaacagggac	10	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80328143	C	C	80328143	3	2	175	1	0	0	0	0	1	0	0	0	10762	1638	57	5	3434	5	NRXN3	14	80328143	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	893605	80328143	27021397	872	142907											
KCNK10	54207	broad.mit.edu	37	chr14	88693908	88693909	+	Intron	INS	-	T	T													aatatgaaaaagagggagagINStggcagagaaattagcatac							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88693909	T	T	88693908	6	5	175	0	1	1	1	0	0	0	0	0	8129	1044	36	0		0	KCNK10	14	88693908	Intron	INS	-	TCGA-55-1592-01A-01D-0969-08	8365765	88693908	18655632	873	142908											
TTC8	123016	broad.mit.edu	37	chr14	89323698	89323698	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccattgcatggggagagTaaacagcttcttcaggaata	12	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89323698	G	G	89323698	1	3	175	0	1	0	0	0	0	0	0	0	16840	1653	57	5		5	TTC8	14	89323698	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	629790	89323698	18025842	874	142909											
SLC24A4	123041	broad.mit.edu	37	chr14	92911713	92911713	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaagtgtagttttcatTgttcttttttgttgttgttt	7	3	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92911713	G	G	92911713	1	3	175	0	1	0	0	0	0	0	0	0	14582	1827	63	5		5	SLC24A4	14	92911713	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	3588015	92911713	14437827	875	142910											
ASB2	51676	broad.mit.edu	37	chr14	94413886	94413886	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctggggaaggagaagagatCagcaagtggccaagtgaccg	16	8	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94413886	A	A	94413886	1	1	175	0	1	0	0	0	0	0	0	0	1027	841	29	3		3	ASB2	14	94413886	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1502173	94413886	12935654	876	142911											
DICER1	23405	broad.mit.edu	37	chr14	95572635	95572635	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaaaatacaactgtttgTagtatggaaatgatgattaa	7	4	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95572635	C	C	95572635	1	2	175	0	1	0	0	0	0	0	0	0	4561	1653	57	5		5	DICER1	14	95572635	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1158749	95572635	11776905	877	142912											
ATG2B	55102	broad.mit.edu	37	chr14	96777950	96777950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatatccatcacacgaaCataatctaaaatttttaaaa	1	11	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96777950	A	A	96777950	3	1	175	1	0	0	0	0	1	0	0	0	1098	478	17	3	2381	3	ATG2B	14	96777950	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1205315	96777950	10571590	878	142913											
HHIPL1	84439	broad.mit.edu	37	chr14	100128993	100128993	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttaatatgttttggacaAgtgaccctgcatgctcattc	7	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100128993	G	G	100128993	1	3	175	0	1	0	0	0	0	0	0	0	7160	87	3	5		5	HHIPL1	14	100128993	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	3351043	100128993	7220547	879	142914											
CDC42BPB	9578	broad.mit.edu	37	chr14	103412024	103412024	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgggtgacctctatgacataGagcccttcttctaggccgac	10	13	3	3	rs141924737		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103412024	C	C	103412024	2	2	175	1	0	0	0	0	0	0	0	1	3103	929	33	4		4	CDC42BPB	14	103412024	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	3283031	103412024	3937516	880	142915											
PPP1R13B	23368	broad.mit.edu	37	chr14	104251168	104251168	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttggggagtcctcgtgtcGaaggaaaaatttcacttctt	11	7	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104251168	A	A	104251168	4	1	175	1	0	0	0	0	0	1	0	0	12458	1066	37	4	3091	4	PPP1R13B	14	104251168	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	839144	104251168	3098372	881	142916											
PLD4	122618	broad.mit.edu	37	chr14	105397021	105397021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctggcctgggtggagtgGggtggaggccccacagaggg	20	10	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105397021	T	T	105397021	1	4	175	0	1	0	0	0	0	0	0	0	12143	1247	43	2		2	PLD4	14	105397021	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1145853	105397021	1952519	882	142917											
CYFIP1	23191	broad.mit.edu	37	chr15	23000107	23000107	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttcctaggcagtgctttgGtgatgggctacactgggctg	15	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23000107	C	C	23000107	3	2	175	1	0	0	0	0	1	0	0	0	4170	1261	44	4	3956	4	CYFIP1	15	23000107	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08		23000107	79531285	883	142918											
C15orf2	23742	broad.mit.edu	37	chr15	24921525	24921525	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggatccggtgcagatcgaaGgggaggatgacgagaaaagg	18	5	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24921525	C	C	24921525	3	2	175	1	0	0	0	0	1	0	0	0	1797	1000	35	4	513	4	C15orf2	15	24921525	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1921418	24921525	77609867	884	142919											
SNRPN	6638	broad.mit.edu	37	chr15	25200114	25200114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtgtgcgaagcctgccGctgctgcagcgagtctggcg	17	11	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25200114	T	T	25200114	1	4	175	0	1	0	0	0	0	0	0	0	14984	1102	38	3		3	SNRPN	15	25200114	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	278589	25200114	77331278	885	142920											
GABRB3	2562	broad.mit.edu	37	chr15	26806314	26806314	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttgtcattgtcagcacaGttgtgatccctagaaaagaa	10	7	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806314	T	T	26806314	3	4	175	1	0	0	0	0	1	0	0	0	6228	1029	36	3	584	3	GABRB3	15	26806314	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1606200	26806314	75725078	886	142921											
OCA2	4948	broad.mit.edu	37	chr15	28141200	28141200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaaagatctatgaaggCcaagtggaggtgactggcaa	14	5	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28141200	A	A	28141200	1	1	175	0	1	0	0	0	0	0	0	0	10910	754	26	3		3	OCA2	15	28141200	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1334886	28141200	74390192	887	142922											
OCA2	4948	broad.mit.edu	37	chr15	28235642	28235642	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatagtgaaaaaaccagCgaaagcctgaatcctggaac	8	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28235642	T	T	28235642	1	4	175	0	1	0	0	0	0	0	0	0	10910	783	27	4		4	OCA2	15	28235642	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	94442	28235642	74295750	888	142923											
OTUD7A	161725	broad.mit.edu	37	chr15	31862303	31862303	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcgctctggctgcttgggAccccgcccttcattgaacac	9	16	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31862303	G	G	31862303	2	3	175	1	0	0	0	0	0	0	0	1	11412	262	10	5		5	OTUD7A	15	31862303	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	3626661	31862303	70669089	889	142924											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32928496	32928496	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctgaggaaaccttactaActccagagcgactagttgga	10	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32928496	G	G	32928496	3	3	175	1	0	0	0	0	1	0	0	0	865	43	2	5	1591	5	ARHGAP11A	15	32928496	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1066193	32928496	69602896	890	142925											
RYR3	6263	broad.mit.edu	37	chr15	33873860	33873860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggtaagtacacatacaGtgccttctccctgggatgat	11	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33873860	T	T	33873860	1	4	175	0	1	0	0	0	0	0	0	0	13881	1044	36	3		3	RYR3	15	33873860	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	945364	33873860	68657532	891	142926											
RYR3	6263	broad.mit.edu	37	chr15	33873871	33873871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatacagtgccttctccCtgggatgatttccatgggat	9	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33873871	A	A	33873871	1	1	175	0	1	0	0	0	0	0	0	0	13881	696	24	2		2	RYR3	15	33873871	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	11	33873871	68657521	892	142927											
RYR3	6263	broad.mit.edu	37	chr15	33955875	33955875	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgagctcatgcaggccctGaacatgtctgcggccctgac	11	13	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33955875	A	A	33955875	2	1	175	1	0	0	0	0	0	0	0	1	13881	1277	45	4		4	RYR3	15	33955875	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	82004	33955875	68575517	893	142928											
RYR3	6263	broad.mit.edu	37	chr15	34111908	34111908	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaataaataaataaataaaTaaataaataaataaaaagcc	1	2	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34111908	A	A	34111908	1	1	175	0	1	0	0	0	0	0	0	0	13881	1421	49	5		5	RYR3	15	34111908	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	156033	34111908	68419484	894	142929											
AQR	9716	broad.mit.edu	37	chr15	35155027	35155027	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaaatcccaatttccactCtgaggaatgctgttttataa	6	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35155027	A	A	35155027	1	1	175	0	1	0	0	0	0	0	0	0	837	928	32	3		3	AQR	15	35155027	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1043119	35155027	67376365	895	142930											
ATPBD4	89978	broad.mit.edu	37	chr15	35693047	35693047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagatccaaacaccaaaCattccaggggctttgggttt	10	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35693047	A	A	35693047	1	1	175	0	1	0	0	0	0	0	0	0	1206	493	17	3		3	ATPBD4	15	35693047	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	538020	35693047	66838345	896	142931											
EIF2AK4	440275	broad.mit.edu	37	chr15	40301768	40301768	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagatttggtcatgtaccAgtaattgcttttataatgaa	7	6	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40301768	G	G	40301768	1	3	175	0	1	0	0	0	0	0	0	0	5039	203	7	5		5	EIF2AK4	15	40301768	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4608721	40301768	62229624	897	142932											
PLA2G4D	283748	broad.mit.edu	37	chr15	42363552	42363552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaattggtcccttcttccCcttacttcttcccctcagac	4	16	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42363552	A	A	42363552	1	1	175	0	1	0	0	0	0	0	0	0	12099	638	22	2		2	PLA2G4D	15	42363552	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2061784	42363552	60167840	898	142933											
PLA2G4F	255189	broad.mit.edu	37	chr15	42434278	42434278	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaggacgttgtatcgactGagggccaccagccgataaaa	11	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42434278	A	A	42434278	2	1	175	1	0	0	0	0	0	0	0	1	12101	1277	45	4		4	PLA2G4F	15	42434278	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	70726	42434278	60097114	899	142934											
HAUS2	55142	broad.mit.edu	37	chr15	42855861	42855861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgtaattcttatctcaaAttaaaagtcctgattaaagg	6	5	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42855861	G	G	42855861	1	3	175	0	1	0	0	0	0	0	0	0	7032	116	4	5		5	HAUS2	15	42855861	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	421583	42855861	59675531	900	142935											
CATSPER2	117155	broad.mit.edu	37	chr15	43924352	43924353	+	Intron	DEL	TA	-	-													ttctccacagctataaacgcTatatatatattcccatggtc							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43924353	-	-	43924352	6	5	175	0	1	1	0	1	0	0	0	0	2714	1537	53	0		0	CATSPER2	15	43924352	Intron	DEL	TA	TCGA-55-1592-01A-01D-0969-08	1068491	43924352	58607040	901	142936											
CATSPER2	117155	broad.mit.edu	37	chr15	43927759	43927759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaaaatggaggacaccCcacagtggatgaagaatcag	11	7	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43927759	A	A	43927759	1	1	175	0	1	0	0	0	0	0	0	0	2714	638	22	2		2	CATSPER2	15	43927759	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3407	43927759	58603633	902	142937											
FBN1	2200	broad.mit.edu	37	chr15	48723050	48723050	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaaatgcatatatctgCcttaattacctgacttttaa	4	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48723050	G	G	48723050	1	3	175	0	1	0	0	0	0	0	0	0	5759	754	26	4		4	FBN1	15	48723050	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4795291	48723050	53808342	903	142938											
SHC4	399694	broad.mit.edu	37	chr15	49160177	49160177	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaatacaaatgttttttAtttaaagagacaagaaaagc	5	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49160177	G	G	49160177	1	3	175	0	1	0	0	0	0	0	0	0	14386	464	16	5		5	SHC4	15	49160177	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	437127	49160177	53371215	904	142939											
UNC13C	440279	broad.mit.edu	37	chr15	54305855	54305855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatctttaaggaacttcaggGaataagtcagattgaaacag	10	5	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54305855	T	T	54305855	3	4	175	1	0	0	0	0	1	0	0	0	17112	1174	41	3	757	3	UNC13C	15	54305855	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	5145678	54305855	48225537	905	142940											
UNC13C	440279	broad.mit.edu	37	chr15	54306827	54306827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcactagaactaatggaaGctctctcctgtcatcttcgg	7	11	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54306827	T	T	54306827	3	4	175	1	0	0	0	0	1	0	0	0	17112	971	34	3	1729	3	UNC13C	15	54306827	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	972	54306827	48224565	906	142941											
UNC13C	440279	broad.mit.edu	37	chr15	54307661	54307661	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgactctgatgtctacaCggagccctattactataaag	7	10	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54307661	A	A	54307661	3	1	175	1	0	0	0	0	1	0	0	0	17112	536	19	3	2563	3	UNC13C	15	54307661	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	834	54307661	48223731	907	142942											
UNC13C	440279	broad.mit.edu	37	chr15	54528704	54528704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacactgcacttactcatggGgtaaaagagggcaagaatgg	12	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54528704	T	T	54528704	1	4	175	0	1	0	0	0	0	0	0	0	17112	1247	43	2		2	UNC13C	15	54528704	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	221043	54528704	48002688	908	142943											
TCF12	6938	broad.mit.edu	37	chr15	57525012	57525012	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagttcaccttacgttgctGcctcacacactcctcccatc	5	18	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57525012	A	A	57525012	3	1	175	1	0	0	0	0	1	0	0	0	15809	1319	46	4	1039	4	TCF12	15	57525012	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2996308	57525012	45006380	909	142944											
ALDH1A2	8854	broad.mit.edu	37	chr15	58256303	58256303	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatgttctcaccgctttgCctggggaggggcctgtctat	13	12	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58256303	T	T	58256303	1	4	175	0	1	0	0	0	0	0	0	0	491	754	26	4		4	ALDH1A2	15	58256303	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	731291	58256303	44275089	910	142945											
AQP9	366	broad.mit.edu	37	chr15	58458996	58458996	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatgtggctggcggtgtctCtggtaagcagtagaaataat	13	5	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58458996	T	T	58458996	3	4	175	1	0	0	0	0	1	0	0	0	835	913	32	4	242	4	AQP9	15	58458996	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	202693	58458996	44072396	911	142946											
LIPC	3990	broad.mit.edu	37	chr15	58830684	58830684	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcggcttcaactcctccCtgcctctggtgatgataatc	9	13	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58830684	A	A	58830684	3	1	175	1	0	0	0	0	1	0	0	0	8893	680	24	2	247	2	LIPC	15	58830684	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	371688	58830684	43700708	912	142947											
SLTM	79811	broad.mit.edu	37	chr15	59224503	59224503	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggcacaagagcagaggCaagttatataaccaaaatat	9	6	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59224503	T	T	59224503	1	4	175	0	1	0	0	0	0	0	0	0	14868	725	25	4		4	SLTM	15	59224503	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	393819	59224503	43306889	913	142948											
FAM96A	84191	broad.mit.edu	37	chr15	64380925	64380925	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgaggtactgttggcgTgaacctgataataaccagat	11	7	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64380925	A	A	64380925	3	1	175	1	0	0	0	0	1	0	0	0	5711	1696	59	5	248	5	FAM96A	15	64380925	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	5156422	64380925	38150467	914	142949											
PLEKHO2	80301	broad.mit.edu	37	chr15	65157686	65157686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgccaagccctctcagGctgagggcaccccaggaact	11	16	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65157686	T	T	65157686	3	4	175	1	0	0	0	0	1	0	0	0	12180	1203	42	3	1094	3	PLEKHO2	15	65157686	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	776761	65157686	37373706	915	142950											
NEO1	4756	broad.mit.edu	37	chr15	73528761	73528761	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggtctctacccgcttcatCaaattgacgtggcggacacc	9	14	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73528761	G	G	73528761	3	3	175	1	0	0	0	0	1	0	0	0	10431	816	29	4	1395	4	NEO1	15	73528761	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	8371075	73528761	29002631	916	142951											
NPTN	27020	broad.mit.edu	37	chr15	73884610	73884610	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggaccacatgaggaatttCactttaccactttggaggaa	9	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73884610	A	A	73884610	1	1	175	0	1	0	0	0	0	0	0	0	10696	841	29	3		3	NPTN	15	73884610	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	355849	73884610	28646782	917	142952											
STOML1	9399	broad.mit.edu	37	chr15	74281318	74281318	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaggatgtcctcctagcttCcatcaattttctggtctctt	6	12	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74281318	T	T	74281318	1	4	175	0	1	0	0	0	0	0	0	0	15431	870	30	4		4	STOML1	15	74281318	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	396708	74281318	28250074	918	142953											
STRA6	64220	broad.mit.edu	37	chr15	74476122	74476122	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagtacttgctgagcactCttctccccaactgaggccag	10	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74476122	A	A	74476122	1	1	175	0	1	0	0	0	0	0	0	0	15440	928	32	3		3	STRA6	15	74476122	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	194804	74476122	28055270	919	142954											
CYP1A1	1543	broad.mit.edu	37	chr15	75014042	75014042	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcaatcaggctgtctgtgAtgtcccggatgtggccctta	12	11	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75014042	T	T	75014042	3	4	175	1	0	0	0	0	1	0	0	0	4182	333	12	5	716	5	CYP1A1	15	75014042	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	537920	75014042	27517350	920	142955											
RASGRF1	5923	broad.mit.edu	37	chr15	79324412	79324412	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccccaccgccatggtccatCccccacacctgcctccctga	5	24	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79324412	T	T	79324412	1	4	175	0	1	0	0	0	0	0	0	0	13180	870	30	4		4	RASGRF1	15	79324412	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	4310370	79324412	23206980	921	142956											
C15orf26	161502	broad.mit.edu	37	chr15	81428997	81428997	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgactccagatgaaattcaGtcccatctgaaagacgaatt	7	9	2	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81428997	A	A	81428997	2	1	175	1	0	0	0	0	0	0	0	1	1800	1020	36	4		4	C15orf26	15	81428997	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	2104585	81428997	21102395	922	142957											
IL16	3603	broad.mit.edu	37	chr15	81591951	81591951	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgggaccccaccaaagctgGacaccgccaatggcactccc	9	17	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81591951	A	A	81591951	3	1	175	1	0	0	0	0	1	0	0	0	7703	1174	41	4	2334	4	IL16	15	81591951	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	162954	81591951	20939441	923	142958											
EFTUD1	79631	broad.mit.edu	37	chr15	82533698	82533698	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatacttctgaggaaaagtcCacgtgtcctggagagtctat	11	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82533698	A	A	82533698	2	1	175	1	0	0	0	0	0	0	0	1	5000	581	21	2		2	EFTUD1	15	82533698	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	941747	82533698	19997694	924	142959											
CPEB1	64506	broad.mit.edu	37	chr15	83224462	83224462	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgagtctgttcccattaGtatttactccacagaaagat	6	10	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83224462	C	C	83224462	1	2	175	0	1	0	0	0	0	0	0	0	3832	1044	36	4		4	CPEB1	15	83224462	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	690764	83224462	19306930	925	142960											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84611402	84611402	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgtggagttggaattcaGacccgagatgtgtactgcct	12	9	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84611402	T	T	84611402	3	4	175	1	0	0	0	0	1	0	0	0	276	933	33	3	2238	3	ADAMTSL3	15	84611402	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1386940	84611402	17919990	926	142961											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84683293	84683294	+	Splice_Site	DNP	GG	TT	TT													atatttgtttttgttccaaaGgtgtccctcagcctaatata							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	84683294	TT	TT	84683293	5	4	175	1	0	0	0	0	0	0	1	0	276	1014	35	2	4063	2	ADAMTSL3	15	84683293	Splice_Site	DNP	GG	TCGA-55-1592-01A-01D-0969-08	71891	84683293	17848099	927	142962											
NTRK3	4916	broad.mit.edu	37	chr15	88423449	88423449	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccaagttctgggctgagaTagctcttatgagccctcccc	10	13	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88423449	C	C	88423449	1	2	175	0	1	0	0	0	0	0	0	0	10803	1421	49	5		5	NTRK3	15	88423449	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	3740156	88423449	14107943	928	142963											
NTRK3	4916	broad.mit.edu	37	chr15	88575954	88575954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagttttgaaacaaacaGggagggtctcttagaaagtg	11	5	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88575954	T	T	88575954	1	4	175	0	1	0	0	0	0	0	0	0	10803	1015	35	2		2	NTRK3	15	88575954	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	152505	88575954	13955438	929	142964											
NTRK3	4916	broad.mit.edu	37	chr15	88678465	88678465	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcaggcagccctcggaaatCtctccctcttggtagtattc	9	13	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88678465	A	A	88678465	3	1	175	1	0	0	0	0	1	0	0	0	10803	912	32	3	1754	3	NTRK3	15	88678465	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	102511	88678465	13852927	930	142965											
HAPLN3	145864	broad.mit.edu	37	chr15	89424754	89424754	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtagtccccaaaggagcgGtgcctcagcccgatggccac	13	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89424754	C	C	89424754	3	2	175	1	0	0	0	0	1	0	0	0	7022	1252	44	4	767	4	HAPLN3	15	89424754	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	746289	89424754	13106638	931	142966											
C15orf42	90381	broad.mit.edu	37	chr15	90144435	90144435	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctcctcctttttggttgTtgtgtcttatataaatagat	7	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90144435	C	C	90144435	1	2	175	0	1	0	0	0	0	0	0	0	1809	1740	60	5		5	C15orf42	15	90144435	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	719681	90144435	12386957	932	142967											
PEX11A	8800	broad.mit.edu	37	chr15	90226986	90226986	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtagtagtggtgagcagcCctcgttcgccatttctcttt	10	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90226986	G	G	90226986	3	3	175	1	0	0	0	0	1	0	0	0	11832	622	22	4	381	4	PEX11A	15	90226986	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	82551	90226986	12304406	933	142968											
WDR93	56964	broad.mit.edu	37	chr15	90278900	90278900	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgttatgtgttaggcactgGactagctttcgggtttacaa	11	7	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90278900	C	C	90278900	1	2	175	0	1	0	0	0	0	0	0	0	17467	1189	41	4		4	WDR93	15	90278900	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	51914	90278900	12252492	934	142969											
SOLH	6650	broad.mit.edu	37	chr16	603047	603047	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccacccctgcacaggtgcgCccccgcccctgcccccccac	8	26	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	603047	G	G	603047	1	3	175	0	1	0	0	0	0	0	0	0	15039	754	26	4		4	SOLH	16	603047	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		603047	89751706	935	142970											
MSLNL	401827	broad.mit.edu	37	chr16	819450	819450	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagctggcccgtcagcccaAgtgggcgtccagctgaatct	13	13	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	819450	C	C	819450	3	2	175	1	0	0	0	0	1	0	0	0	9976	72	3	5	25	5	MSLNL	16	819450	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	216403	819450	89535303	936	142971											
ANKS3	124401	broad.mit.edu	37	chr16	4747327	4747327	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagtcgtctggtccccggaGactcacccatctcacggaca	9	16	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4747327	A	A	4747327	1	1	175	0	1	0	0	0	0	0	0	0	690	957	33	4		4	ANKS3	16	4747327	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3927877	4747327	85607426	937	142972											
MYH11	4629	broad.mit.edu	37	chr16	15917231	15917231	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtagatgggcaggtgtttaTaggggttgaccaccacgcag	15	7	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15917231	C	C	15917231	3	2	175	1	0	0	0	0	1	0	0	0	10125	1406	49	5	5751	5	MYH11	16	15917231	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	11169904	15917231	74437522	938	142973											
ABCC1	4363	broad.mit.edu	37	chr16	16138552	16138552	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaagtaagaccccttccCtcccaggtgggctccatttt	7	14	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16138552	T	T	16138552	1	4	175	0	1	0	0	0	0	0	0	0	49	696	24	4		4	ABCC1	16	16138552	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	221321	16138552	74216201	939	142974											
XYLT1	64131	broad.mit.edu	37	chr16	17353367	17353367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagccatcctggagaagagGggagagaaacagaagagaaa	15	5	0	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17353367	A	A	17353367	1	1	175	0	1	0	0	0	0	0	0	0	17590	1247	43	4		4	XYLT1	16	17353367	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1214815	17353367	73001386	940	142975											
PDILT	204474	broad.mit.edu	37	chr16	20410590	20410590	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcagagacacaagcggcCaccagcagcaggggcatcca	12	14	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20410590	T	T	20410590	2	4	175	1	0	0	0	0	0	0	0	1	11768	581	21	4		4	PDILT	16	20410590	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	3057223	20410590	69944163	941	142976											
ACSM2A	123876	broad.mit.edu	37	chr16	20494626	20494626	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctggctgggcgcggcagcTcacgcctgtaatcccagcac	12	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20494626	A	A	20494626	1	1	175	0	1	0	0	0	0	0	0	0	183	1566	54	5		5	ACSM2A	16	20494626	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	84036	20494626	69860127	942	142977											
ACSM1	116285	broad.mit.edu	37	chr16	20636757	20636757	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctcacctcccctcgaatCgggtctgggctgcccaccac	8	20	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20636757	A	A	20636757	2	1	175	1	0	0	0	0	0	0	0	1	182	871	31	3		3	ACSM1	16	20636757	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	142131	20636757	69717996	943	142978											
LOC81691	81691	broad.mit.edu	37	chr16	20833036	20833036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggagacatttcttctagGgttcttaaacacacattcta	6	8	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20833036	T	T	20833036	1	4	175	0	1	0	0	0	0	0	0	0	8977	1247	43	2		2	LOC81691	16	20833036	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	196279	20833036	69521717	944	142979											
METTL9	51108	broad.mit.edu	37	chr16	21655748	21655748	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaacagaaagaagcacattGactattaaagcctattcttt	5	7	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21655748	T	T	21655748	1	4	175	0	1	0	0	0	0	0	0	0	9601	1305	45	3		3	METTL9	16	21655748	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	822712	21655748	68699005	945	142980											
OTOA	146183	broad.mit.edu	37	chr16	21739597	21739597	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgagtacactgtggacatCatggggaacctgctgtgtca	13	8	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21739597	T	T	21739597	2	4	175	1	0	0	0	0	0	0	0	1	11396	816	29	4		4	OTOA	16	21739597	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	83849	21739597	68615156	946	142981											
SLC5A11	115584	broad.mit.edu	37	chr16	24895481	24895481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccccgggtcactggggcGgacaacagcacctctctcca	12	16	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24895481	T	T	24895481	1	4	175	0	1	0	0	0	0	0	0	0	14777	1131	39	1		1	SLC5A11	16	24895481	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3155884	24895481	65459272	947	142982											
IL21R	50615	broad.mit.edu	37	chr16	27456538	27456538	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctcacctgctgcttctcctCctgcttgtcatagtcttcat	5	16	5	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27456538	G	G	27456538	2	3	175	1	0	0	0	0	0	0	0	1	7741	842	30	4		4	IL21R	16	27456538	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2561057	27456538	62898215	948	142983											
SRCAP	10847	broad.mit.edu	37	chr16	30721220	30721220	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaggatgatgaggaaaCgattgaagttgaagaacaac	14	3	0	6			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30721220	T	T	30721220	3	4	175	1	0	0	0	0	1	0	0	0	15253	536	19	4	927	4	SRCAP	16	30721220	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	3264682	30721220	59633533	949	142984											
RNF40	9810	broad.mit.edu	37	chr16	30776107	30776107	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctgagctggtttccttctCtgtgcagtggggataaagac	12	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30776107	T	T	30776107	1	4	175	0	1	0	0	0	0	0	0	0	13604	928	32	4		4	RNF40	16	30776107	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	54887	30776107	59578646	950	142985											
ABCC12	94160	broad.mit.edu	37	chr16	48118011	48118011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaggaaacattataagccAaaggcgcactgagaggggaa	14	6	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48118011	T	T	48118011	1	4	175	0	1	0	0	0	0	0	0	0	52	145	5	5		5	ABCC12	16	48118011	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	17341904	48118011	42236742	951	142986											
ABCC12	94160	broad.mit.edu	37	chr16	48174499	48174499	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcaggtcatagacaagcAaaaggaaggcaggtgctcca	14	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48174499	T	T	48174499	1	4	175	0	1	0	0	0	0	0	0	0	52	145	5	5		5	ABCC12	16	48174499	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	56488	48174499	42180254	952	142987											
CNOT1	23019	broad.mit.edu	37	chr16	58580244	58580244	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttgtggttgtgatgggaggGagttcttctggctgcttgac	16	6	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58580244	C	C	58580244	2	2	175	1	0	0	0	0	0	0	0	1	3649	1161	41	4		4	CNOT1	16	58580244	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	10405745	58580244	31774509	953	142988											
CDH11	1009	broad.mit.edu	37	chr16	64981591	64981591	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagttctgtagataatcaTagtccaagtctgaatctgtg	8	9	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64981591	C	C	64981591	3	2	175	1	0	0	0	0	1	0	0	0	3127	1406	49	5	88	5	CDH11	16	64981591	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	6401347	64981591	25373162	954	142989											
CDH5	1003	broad.mit.edu	37	chr16	66426327	66426327	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaatgataaggacaatccGgcctggatgttcctatgcct	11	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66426327	A	A	66426327	1	1	175	0	1	0	0	0	0	0	0	0	3143	1131	39	4		4	CDH5	16	66426327	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1444736	66426327	23928426	955	142990											
EXOC3L	283849	broad.mit.edu	37	chr16	67220363	67220363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtccttgtttgaaagaGccctttccctgtgacatgtc	8	12	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67220363	T	T	67220363	1	4	175	0	1	0	0	0	0	0	0	0	5346	986	34	3		3	EXOC3L	16	67220363	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	794036	67220363	23134390	956	142991											
ZDHHC1	29800	broad.mit.edu	37	chr16	67441686	67441686	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaccttgtacatagtagatCctcagtaaatgtttgctgac	8	8	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67441686	A	A	67441686	1	1	175	0	1	0	0	0	0	0	0	0	17726	870	30	3		3	ZDHHC1	16	67441686	5'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	221323	67441686	22913067	957	142992											
DPEP2	64174	broad.mit.edu	37	chr16	68026508	68026508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtagccctttctggtaaaCctgccttaggaccaggggca	11	12	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68026508	A	A	68026508	3	1	175	1	0	0	0	0	1	0	0	0	4754	507	18	3	1201	3	DPEP2	16	68026508	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	584822	68026508	22328245	958	142993											
NFATC3	4775	broad.mit.edu	37	chr16	68225604	68225604	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgatggggcaactgtgaGcattaaacctgaaccagaag	11	9	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68225604	A	A	68225604	3	1	175	1	0	0	0	0	1	0	0	0	10459	971	34	4	3066	4	NFATC3	16	68225604	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	199096	68225604	22129149	959	142994											
TERF2	7014	broad.mit.edu	37	chr16	69391330	69391330	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaggtttttactgggtAcataaccagtctatacctgt	7	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69391330	G	G	69391330	1	3	175	0	1	0	0	0	0	0	0	0	15884	406	14	5		5	TERF2	16	69391330	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1165726	69391330	20963423	960	142995											
PDPR	55066	broad.mit.edu	37	chr16	70166028	70166028	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttttcttccactcccCactccatgtcatttctccac	2	16	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70166028	T	T	70166028	1	4	175	0	1	0	0	0	0	0	0	0	11783	609	21	4		4	PDPR	16	70166028	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	774698	70166028	20188725	961	142996											
KIAA0174	9798	broad.mit.edu	37	chr16	71955338	71955338	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattacaacgtaccctatgaAcctgactctgtggtcatggt	8	10	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71955338	T	T	71955338	3	4	175	1	0	0	0	0	1	0	0	0	8228	40	2	5	552	5	KIAA0174	16	71955338	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1789310	71955338	18399415	962	142997											
ADAMTS18	170692	broad.mit.edu	37	chr16	77401715	77401715	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctgactaattcctgtatGtgggcacaggagctaaaagc	10	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77401715	A	A	77401715	1	1	175	0	1	0	0	0	0	0	0	0	263	1392	48	4		4	ADAMTS18	16	77401715	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5446377	77401715	12953038	963	142998											
CDYL2	124359	broad.mit.edu	37	chr16	80638575	80638575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcctcctccagcctgggCcttcccagtcccatgtttcc	8	19	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80638575	A	A	80638575	1	1	175	0	1	0	0	0	0	0	0	0	3216	754	26	3		3	CDYL2	16	80638575	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3236860	80638575	9716178	964	142999											
ZC3H18	124245	broad.mit.edu	37	chr16	88653008	88653008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacggtgttctctgtttcagGatgatgacctggaagaaggt	14	6	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88653008	T	T	88653008	3	4	175	1	0	0	0	0	1	0	0	0	17694	1188	41	3	610	3	ZC3H18	16	88653008	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	8014433	88653008	1701745	965	143000											
RPL13	6137	broad.mit.edu	37	chr16	89628715	89628716	+	Intron	DNP	CC	TT	TT													ttgcagcagtgcggccaaccCcacttaactcttctcattca							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	89628716	TT	TT	89628715	1	4	175	0	1	0	0	0	0	0	0	0	13670	638	22	4		4	RPL13	16	89628715	Intron	DNP	CC	TCGA-55-1592-01A-01D-0969-08	975707	89628715	726038	966	143001											
PRPF8	10594	broad.mit.edu	37	chr17	1581071	1581071	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggcagaggtggggcataTatgtataatatacatacaga	12	5	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1581071	C	C	1581071	1	2	175	0	1	0	0	0	0	0	0	0	12681	1421	49	5		5	PRPF8	17	1581071	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08		1581071	79614139	967	143002											
CAMKK1	84254	broad.mit.edu	37	chr17	3785873	3785873	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggacctggtcagagggagCagacatgggggtggggcttg	20	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3785873	T	T	3785873	1	4	175	0	1	0	0	0	0	0	0	0	2632	725	25	4		4	CAMKK1	17	3785873	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2204802	3785873	77409337	968	143003											
PITPNM3	83394	broad.mit.edu	37	chr17	6371463	6371463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgaagcgcttacctcccAtgtggatgccccagcccccg	9	16	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6371463	G	G	6371463	1	3	175	0	1	0	0	0	0	0	0	0	12047	232	8	5		5	PITPNM3	17	6371463	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2585590	6371463	74823747	969	143004											
BCL6B	255877	broad.mit.edu	37	chr17	6928575	6928575	+	Intron	DEL	C	-	-													ctgctccaggcaagtttgtgCcaaaaactctcccagaaagg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6928575	-	-	6928575	6	5	175	0	1	1	0	1	0	0	0	0	1382	754	26	0		0	BCL6B	17	6928575	Intron	DEL	C	TCGA-55-1592-01A-01D-0969-08	557112	6928575	74266635	970	143005											
POLR2A	5430	broad.mit.edu	37	chr17	7415055	7415055	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaccctccctggatctggGtggcgacagaagcagggaag	15	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7415055	A	A	7415055	1	1	175	0	1	0	0	0	0	0	0	0	12309	1276	44	4		4	POLR2A	17	7415055	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	486480	7415055	73780155	971	143006											
TP53	7157	broad.mit.edu	37	chr17	7577551	7577551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctccggttcatgccgcCcatgcaggaactgttacaca	11	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577551	A	A	7577551	3	1	175	1	0	0	0	0	1	0	0	0	16505	623	22	2	560	2	TP53	17	7577551	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	162496	7577551	73617659	972	143007											
PIK3R5	23533	broad.mit.edu	37	chr17	8784284	8784284	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacagcaaaggggcagctGttggagccgatgatctgcac	13	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8784284	A	A	8784284	2	1	175	1	0	0	0	0	0	0	0	1	12017	1368	48	4		4	PIK3R5	17	8784284	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	1206733	8784284	72410926	973	143008											
MYH4	4622	broad.mit.edu	37	chr17	10369629	10369629	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taacgctctttgaggttataCagcacagcaggctcatgcag	10	10	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10369629	T	T	10369629	2	4	175	1	0	0	0	0	0	0	0	1	10131	465	17	4		4	MYH4	17	10369629	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1585345	10369629	70825581	974	143009											
MAP2K4	6416	broad.mit.edu	37	chr17	12013830	12013830	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaaattacagtgtcactGtataaactttcctaaaatat	4	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12013830	C	C	12013830	1	2	175	0	1	0	0	0	0	0	0	0	9331	1392	48	4		4	MAP2K4	17	12013830	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1644201	12013830	69181380	975	143010											
LGALS9	3965	broad.mit.edu	37	chr17	25967594	25967594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatttgctttccctgggcCtaggtttgctgtgaactttc	9	10	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25967594	A	A	25967594	1	1	175	0	1	0	0	0	0	0	0	0	8820	696	24	2		2	LGALS9	17	25967594	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	13953764	25967594	55227616	976	143011											
NF1	4763	broad.mit.edu	37	chr17	29657349	29657349	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgtgtgccttaacttGtacctttaatttaaaaatcg	5	8	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29657349	A	A	29657349	3	1	175	1	0	0	0	0	1	0	0	0	10451	1377	48	4	5860	4	NF1	17	29657349	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3689755	29657349	51537861	977	143012											
LRRC37B	114659	broad.mit.edu	37	chr17	30349570	30349570	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacattccacagccctggagAagactagagctcctcatcca	8	14	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30349570	G	G	30349570	3	3	175	1	0	0	0	0	1	0	0	0	9081	247	9	5	1407	5	LRRC37B	17	30349570	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	692221	30349570	50845640	978	143013											
RHOT1	55288	broad.mit.edu	37	chr17	30538360	30538360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcactacaaagacaagctgActgatgcccaactaacttcc	5	14	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30538360	G	G	30538360	1	3	175	0	1	0	0	0	0	0	0	0	13452	290	10	5		5	RHOT1	17	30538360	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	188790	30538360	50656850	979	143014											
ACCN1	40	broad.mit.edu	37	chr17	31348430	31348430	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggagaaaaggaggccCaggaagtgaggcagcttgcc	16	7	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31348430	A	A	31348430	1	1	175	0	1	0	0	0	0	0	0	0	128	609	21	2		2	ACCN1	17	31348430	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	810070	31348430	49846780	980	143015											
CCT6B	10693	broad.mit.edu	37	chr17	33281436	33281436	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctgaatgcaaaagtttaAtaacatacctctgttaagac	6	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33281436	G	G	33281436	1	3	175	0	1	0	0	0	0	0	0	0	2988	116	4	5		5	CCT6B	17	33281436	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	1933006	33281436	47913774	981	143016											
PIP4K2B	8396	broad.mit.edu	37	chr17	36927168	36927168	+	Intron	DEL	G	-	-													ggtcaaaggcagcaatgaatGaggtggaggtccagatgccc							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36927168	-	-	36927168	6	5	175	0	1	1	0	1	0	0	0	0	12032	1305	45	0		0	PIP4K2B	17	36927168	Intron	DEL	G	TCGA-55-1592-01A-01D-0969-08	3645732	36927168	44268042	982	143017											
MED1	5469	broad.mit.edu	37	chr17	37565297	37565297	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaatagtgattttgggaatGggtggtgtggcaacacctgg	16	4	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37565297	C	C	37565297	2	2	175	1	0	0	0	0	0	0	0	1	9518	1335	47	4		4	MED1	17	37565297	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	638129	37565297	43629913	983	143018											
IKZF3	22806	broad.mit.edu	37	chr17	37991324	37991324	+	Intron	DEL	C	-	-													cacagccaaaggagctggagCccccgccagagccaaagctg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37991324	-	-	37991324	6	5	175	0	1	1	0	1	0	0	0	0	7686	754	26	0		0	IKZF3	17	37991324	Intron	DEL	C	TCGA-55-1592-01A-01D-0969-08	426027	37991324	43203886	984	143019											
ZPBP2	124626	broad.mit.edu	37	chr17	38028495	38028495	+	Intron	SNP	C	T	T													atgctaggtacgattgttttCactctcatctttcttttttt							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38028495	T	T	38028495	1	4	175	0	1	0	0	0	0	0	0	0	18349	841	29	4		4	ZPBP2	17	38028495	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	37171	38028495	43166715	985	143020	613	3									
ZPBP2	124626	broad.mit.edu	37	chr17	38028501	38028501	+	Intron	SNP	C	T	T													ggtacgattgttttcactctCatctttcttttttttttaaa							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38028501	T	T	38028501	1	4	175	0	1	0	0	0	0	0	0	0	18349	841	29	4		4	ZPBP2	17	38028501	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	6	38028501	43166709	986	143021	613	3									
ZPBP2	124626	broad.mit.edu	37	chr17	38028504	38028504	+	Intron	SNP	C	T	T													acgattgttttcactctcatCtttcttttttttttaaagcc							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38028504	T	T	38028504	1	4	175	0	1	0	0	0	0	0	0	0	18349	928	32	4		4	ZPBP2	17	38028504	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3	38028504	43166706	987	143022	613	3									
ZPBP2	124626	broad.mit.edu	37	chr17	38031516	38031516	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaaccttaggcaagagatCgaatagaagacttttttcgg	9	7	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38031516	T	T	38031516	4	4	175	1	0	0	0	0	0	1	0	0	18349	876	31	4	744	4	ZPBP2	17	38031516	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	3012	38031516	43163694	988	143023											
ZPBP2	124626	broad.mit.edu	37	chr17	38031554	38031554	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggagccaagcatatattttCtaccataactttaataaaac	4	9	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38031554	T	T	38031554	2	4	175	1	0	0	0	0	0	0	0	1	18349	912	32	4		4	ZPBP2	17	38031554	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	38	38031554	43163656	989	143024											
JUP	3728	broad.mit.edu	37	chr17	39919203	39919203	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcacctaagcctgctgcaGggagctccttcccctcgcct	9	18	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39919203	A	A	39919203	1	1	175	0	1	0	0	0	0	0	0	0	8042	1015	35	4		4	JUP	17	39919203	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1887649	39919203	41276007	990	143025											
TUBG2	27175	broad.mit.edu	37	chr17	40818442	40818442	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgaggaagtctccctaCctgccctcggcccaccgggt	11	17	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40818442	T	T	40818442	2	4	175	1	0	0	0	0	0	0	0	1	16891	518	18	4		4	TUBG2	17	40818442	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	899239	40818442	40376768	991	143026											
AOC2	314	broad.mit.edu	37	chr17	40996773	40996773	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctctgtatcccataggGcccagccctggccacaccct	8	20	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40996773	A	A	40996773	3	1	175	1	0	0	0	0	1	0	0	0	729	1203	42	4	132	4	AOC2	17	40996773	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	178331	40996773	40198437	992	143027											
ARL4D	379	broad.mit.edu	37	chr17	41477012	41477012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtctcctttttctcccatgAccttttcttggttcagataa	5	12	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41477012	G	G	41477012	1	3	175	0	1	0	0	0	0	0	0	0	942	290	10	5		5	ARL4D	17	41477012	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	480239	41477012	39718198	993	143028											
PPY	5539	broad.mit.edu	37	chr17	42018943	42018943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccagtggggctccctggGcacccagcagtggctgtagt	15	13	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42018943	A	A	42018943	3	1	175	1	0	0	0	0	1	0	0	0	12516	1203	42	4	219	4	PPY	17	42018943	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	541931	42018943	39176267	994	143029											
C17orf53	78995	broad.mit.edu	37	chr17	42239190	42239190	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actttggacctgagtcacatGgaatgctgatgttgtcacta	10	8	2	2	rs145047676	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42239190	A	A	42239190	1	1	175	0	1	0	0	0	0	0	0	0	1878	1363	47	4		4	C17orf53	17	42239190	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	220247	42239190	38956020	995	143030											
UBTF	7343	broad.mit.edu	37	chr17	42286812	42286812	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctctgggagatgcgctGccagcgactgccgatctcca	13	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42286812	A	A	42286812	4	1	175	1	0	0	0	0	0	1	0	0	17035	1328	46	4	501	4	UBTF	17	42286812	Nonsense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	47622	42286812	38908398	996	143031											
DBF4B	80174	broad.mit.edu	37	chr17	42824438	42824438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaccactttgccgcactatGtaccctccccagagaatcca	5	16	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42824438	A	A	42824438	1	1	175	0	1	0	0	0	0	0	0	0	4282	1392	48	4		4	DBF4B	17	42824438	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	537626	42824438	38370772	997	143032											
ACBD4	79777	broad.mit.edu	37	chr17	43215142	43215142	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagagtcccattcacccaGggacctggactccgaggttt	10	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43215142	A	A	43215142	3	1	175	1	0	0	0	0	1	0	0	0	124	1000	35	4	578	4	ACBD4	17	43215142	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	390704	43215142	37980068	998	143033											
ARHGAP27	201176	broad.mit.edu	37	chr17	43481385	43481385	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccggcctgagtgtagatGggctctcaccggagccgctt	14	14	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43481385	A	A	43481385	1	1	175	0	1	0	0	0	0	0	0	0	878	1363	47	4		4	ARHGAP27	17	43481385	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	266243	43481385	37713825	999	143034											
NSF	4905	broad.mit.edu	37	chr17	44782158	44782158	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagtggacatggagaaaGcagaaagcctgcaagtgacg	15	6	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44782158	A	A	44782158	3	1	175	1	0	0	0	0	1	0	0	0	10766	971	34	4	1458	4	NSF	17	44782158	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1300773	44782158	36413052	1000	143035											
NPEPPS	9520	broad.mit.edu	37	chr17	45681260	45681260	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatggagctgtttaatagtActtactggatatctttgcag	9	5	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45681260	G	G	45681260	1	3	175	0	1	0	0	0	0	0	0	0	10670	406	14	5		5	NPEPPS	17	45681260	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	899102	45681260	35513950	1001	143036											
HOXB1	3211	broad.mit.edu	37	chr17	46607116	46607116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtggcggcaatctccacCctccgggcccggctcaggta	14	15	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46607116	A	A	46607116	3	1	175	1	0	0	0	0	1	0	0	0	7366	622	22	2	210	2	HOXB1	17	46607116	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	925856	46607116	34588094	1002	143037											
HOXB3	3213	broad.mit.edu	37	chr17	46657364	46657364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcgccttcttcgtttggGgtgtggtttgagtgctttgg	15	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46657364	T	T	46657364	1	4	175	0	1	0	0	0	0	0	0	0	7369	1247	43	2		2	HOXB3	17	46657364	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	50248	46657364	34537846	1003	143038											
DLX3	1747	broad.mit.edu	37	chr17	48072147	48072147	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgcccgtgcctgcaagcccAttgagattgaattggtggtg	14	10	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48072147	T	T	48072147	3	4	175	1	0	0	0	0	1	0	0	0	4612	214	8	5	659	5	DLX3	17	48072147	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1414783	48072147	33123063	1004	143039											
ABCC3	8714	broad.mit.edu	37	chr17	48741535	48741535	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcagaagtggcaagagagGattattctggaactgggagc	15	6	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48741535	T	T	48741535	1	4	175	0	1	0	0	0	0	0	0	0	54	1189	41	3		3	ABCC3	17	48741535	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	669388	48741535	32453675	1005	143040											
CA10	56934	broad.mit.edu	37	chr17	49711134	49711134	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaggaaagggctgtataAgccccacagagtcccttttt	10	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49711134	C	C	49711134	1	2	175	0	1	0	0	0	0	0	0	0	2537	87	3	5		5	CA10	17	49711134	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	969599	49711134	31484076	1006	143041											
MKS1	54903	broad.mit.edu	37	chr17	56289822	56289822	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacaaaccaaaccaaaactCaagatgcaacccaagctaga	4	12	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56289822	T	T	56289822	1	4	175	0	1	0	0	0	0	0	0	0	9702	841	29	4		4	MKS1	17	56289822	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	6578688	56289822	24905388	1007	143042											
TMEM49	81671	broad.mit.edu	37	chr17	57917065	57917065	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttcaagcattatagatgatCctctttttactactgaacta	4	9	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57917065	G	G	57917065	1	3	175	0	1	0	0	0	0	0	0	0	16296	870	30	4		4	TMEM49	17	57917065	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1627243	57917065	23278145	1008	143043											
HEATR6	63897	broad.mit.edu	37	chr17	58134604	58134604	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagggtcctgcaggggctttCttccaccaatcaggagggct	14	11	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58134604	T	T	58134604	2	4	175	1	0	0	0	0	0	0	0	1	7100	912	32	4		4	HEATR6	17	58134604	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	217539	58134604	23060606	1009	143044											
USP32	84669	broad.mit.edu	37	chr17	58285630	58285630	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttcattgaaagtcttaaaTgctgtgtacagatatatctg	8	5	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58285630	A	A	58285630	1	1	175	0	1	0	0	0	0	0	0	0	17190	1479	51	5		5	USP32	17	58285630	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	151026	58285630	22909580	1010	143045											
TLK2	11011	broad.mit.edu	37	chr17	60690040	60690040	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaaacctgtaccaggtGcttttattttcttgcttttt	7	7	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60690040	T	T	60690040	1	4	175	0	1	0	0	0	0	0	0	0	16067	1334	46	3		3	TLK2	17	60690040	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	2404410	60690040	20505170	1011	143046											
ACE	1636	broad.mit.edu	37	chr17	61555354	61555354	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagaaggccaaggagctGtatgaaccgatctggcagaa	14	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61555354	T	T	61555354	2	4	175	1	0	0	0	0	0	0	0	1	136	1364	48	3		3	ACE	17	61555354	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	865314	61555354	19639856	1012	143047											
GH1	2688	broad.mit.edu	37	chr17	61995377	61995377	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaaggcatccactcacGgatttctgttgtgtttcctc	11	10	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61995377	T	T	61995377	2	4	175	1	0	0	0	0	0	0	0	1	6431	1130	39	1		1	GH1	17	61995377	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	440023	61995377	19199833	1013	143048											
SCN4A	6329	broad.mit.edu	37	chr17	62021000	62021000	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgggcctaacctcacccAgggacacagcctggtgggtg	16	12	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62021000	T	T	62021000	1	4	175	0	1	0	0	0	0	0	0	0	14033	203	7	5		5	SCN4A	17	62021000	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	25623	62021000	19174210	1014	143049											
SCN4A	6329	broad.mit.edu	37	chr17	62022622	62022623	+	Intron	DNP	CC	AA	AA													ggaagcagggtgggcggtccCctaaccaggagtgacactgg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	62022623	AA	AA	62022622	1	1	175	0	1	0	0	0	0	0	0	0	14033	638	22	2		2	SCN4A	17	62022622	Intron	DNP	CC	TCGA-55-1592-01A-01D-0969-08	1622	62022622	19172588	1015	143050											
PRKCA	5578	broad.mit.edu	37	chr17	64800011	64800011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcaaaggagcagagaaCtttgacaagttcttcacacg	11	8	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64800011	A	A	64800011	3	1	175	1	0	0	0	0	1	0	0	0	12613	564	20	3	1941	3	PRKCA	17	64800011	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2777389	64800011	16395199	1016	143051											
ABCA8	10351	broad.mit.edu	37	chr17	66891114	66891114	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacttctaaagctatgttCtggtgctccacagactgtat	7	11	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66891114	A	A	66891114	3	1	175	1	0	0	0	0	1	0	0	0	38	912	32	3	2136	3	ABCA8	17	66891114	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2091103	66891114	14304096	1017	143052											
ABCA9	10350	broad.mit.edu	37	chr17	66980377	66980377	+	Intron	DEL	A	-	-													ctcaaggtatttggaattttAaaaagaagtttccatcgacg							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66980377	-	-	66980377	6	5	175	0	1	1	0	1	0	0	0	0	39	377	13	0		0	ABCA9	17	66980377	Intron	DEL	A	TCGA-55-1592-01A-01D-0969-08	89263	66980377	14214833	1018	143053											
ABCA9	10350	broad.mit.edu	37	chr17	67014038	67014038	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcacacaaaaggactgtcTaaggcttttcttaaaaaagc	6	8	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67014038	G	G	67014038	1	3	175	0	1	0	0	0	0	0	0	0	39	1537	53	5		5	ABCA9	17	67014038	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	33661	67014038	14181172	1019	143054											
ABCA9	10350	broad.mit.edu	37	chr17	67031811	67031811	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaactcaccaaagacaggCcatagaggagaaagagggtg	12	9	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67031811	T	T	67031811	3	4	175	1	0	0	0	0	1	0	0	0	39	739	26	4	4074	4	ABCA9	17	67031811	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	17773	67031811	14163399	1020	143055											
ABCA5	23461	broad.mit.edu	37	chr17	67257450	67257450	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaagtgtttagaaacttcTtacaaattggtgtctacgca	7	7	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67257450	A	A	67257450	1	1	175	0	1	0	0	0	0	0	0	0	35	1624	56	5		5	ABCA5	17	67257450	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	225639	67257450	13937760	1021	143056											
SDK2	54549	broad.mit.edu	37	chr17	71394318	71394318	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatgttcacctggcgcatGcggaagctggggttggggag	18	8	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71394318	T	T	71394318	2	4	175	1	0	0	0	0	0	0	0	1	14082	1306	46	3		3	SDK2	17	71394318	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	4136868	71394318	9800892	1022	143057											
CD300C	10871	broad.mit.edu	37	chr17	72540857	72540857	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctctgtgagattctcCagggtcactgtgaagctgag	11	11	3	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72540857	T	T	72540857	2	4	175	1	0	0	0	0	0	0	0	1	3027	581	21	4		4	CD300C	17	72540857	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1146539	72540857	8654353	1023	143058											
OTOP2	92736	broad.mit.edu	37	chr17	72926822	72926822	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccaccataagaaccccacGcgcactctggacgtggccct	9	17	1	1	rs150890021	by1000genomes	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72926822	A	A	72926822	2	1	175	1	0	0	0	0	0	0	0	1	11400	1074	38	4		4	OTOP2	17	72926822	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	385965	72926822	8268388	1024	143059											
USP36	57602	broad.mit.edu	37	chr17	76817977	76817977	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtttcctgggttcatgttCtaatcctggcaagaagcagt	12	8	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76817977	T	T	76817977	1	4	175	0	1	0	0	0	0	0	0	0	17194	928	32	4		4	USP36	17	76817977	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3891155	76817977	4377233	1025	143060											
LGALS3BP	3959	broad.mit.edu	37	chr17	76970713	76970713	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgctgggaggggcaggGgccacgggaccccagggcac	21	11	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76970713	C	C	76970713	1	2	175	0	1	0	0	0	0	0	0	0	8816	1247	43	4		4	LGALS3BP	17	76970713	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	152736	76970713	4224497	1026	143061											
C17orf101	79701	broad.mit.edu	37	chr17	80367167	80367167	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagggaaccctgcatgtctGtgccttccccttcccatcca	8	17	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80367167	A	A	80367167	1	1	175	0	1	0	0	0	0	0	0	0	1862	1392	48	4		4	C17orf101	17	80367167	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	3396454	80367167	828043	1027	143062											
DLGAP1	9229	broad.mit.edu	37	chr18	3845280	3845280	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctttatggaaaattaagttCattattcatctcagctttga	5	6	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3845280	T	T	3845280	1	4	175	0	1	0	0	0	0	0	0	0	4599	826	29	4		4	DLGAP1	18	3845280	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		3845280	74231968	1028	143063											
LAMA1	284217	broad.mit.edu	37	chr18	6972999	6972999	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgcccggcccatgactttTatatataggtaaaatcagtc	7	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6972999	A	A	6972999	1	1	175	0	1	0	0	0	0	0	0	0	8677	1769	61	5		5	LAMA1	18	6972999	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	3127719	6972999	71104249	1029	143064											
LAMA1	284217	broad.mit.edu	37	chr18	6982656	6982656	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcctgctggggacagaggAagtgactccatcagagtagc	14	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6982656	T	T	6982656	1	4	175	0	1	0	0	0	0	0	0	0	8677	261	9	5		5	LAMA1	18	6982656	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	9657	6982656	71094592	1030	143065											
C18orf1	753	broad.mit.edu	37	chr18	13645351	13645351	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactcaaccgagagtccgtgAgggccccacccaaccgaacc	9	17	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645351	T	T	13645351	3	4	175	1	0	0	0	0	1	0	0	0	1912	295	11	5	715	5	C18orf1	18	13645351	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	6662695	13645351	64431897	1031	143066											
DSC3	1825	broad.mit.edu	37	chr18	28577024	28577024	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggcagagcactgaaataaTaaaatgaaataattcatgtt	7	4	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28577024	C	C	28577024	1	2	175	0	1	0	0	0	0	0	0	0	4807	1421	49	5		5	DSC3	18	28577024	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	14931673	28577024	49500224	1032	143067											
DSG1	1828	broad.mit.edu	37	chr18	28923371	28923371	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttttgttttttatttgCacccagtgctaactctagta	7	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28923371	A	A	28923371	1	1	175	0	1	0	0	0	0	0	0	0	4816	725	25	3		3	DSG1	18	28923371	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	346347	28923371	49153877	1033	143068											
DSG3	1830	broad.mit.edu	37	chr18	29055815	29055815	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagataagccttggtgttgaTggtgaaggcaaagaagttca	14	4	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29055815	A	A	29055815	3	1	175	1	0	0	0	0	1	0	0	0	4818	1461	51	5	2654	5	DSG3	18	29055815	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	132444	29055815	49021433	1034	143069											
C18orf34	374864	broad.mit.edu	37	chr18	30554589	30554589	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatctggctgaagaggacCaccagtttgaagtgctcctg	11	11	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30554589	A	A	30554589	2	1	175	1	0	0	0	0	0	0	0	1	1920	581	21	2		2	C18orf34	18	30554589	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1498774	30554589	47522659	1035	143070											
MBD1	4152	broad.mit.edu	37	chr18	47799766	47799766	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctgtgcctggtgtccactCgtcctgggtatccgccttct	11	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47799766	A	A	47799766	4	1	175	1	0	0	0	0	0	1	0	0	9434	893	31	3	505	3	MBD1	18	47799766	Nonsense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	17245177	47799766	30277482	1036	143071											
ME2	4200	broad.mit.edu	37	chr18	48447064	48447064	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctctagcaggtcttcttgCagcacaaaaagttattagta	8	8	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48447064	T	T	48447064	3	4	175	1	0	0	0	0	1	0	0	0	9511	710	25	4	908	4	ME2	18	48447064	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	647298	48447064	29630184	1037	143072											
MEX3C	51320	broad.mit.edu	37	chr18	48703798	48703798	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcgagatgcacgaatcatGgagaagtgctctgcagctga	12	8	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48703798	A	A	48703798	2	1	175	1	0	0	0	0	0	0	0	1	9604	1335	47	4		4	MEX3C	18	48703798	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	256734	48703798	29373450	1038	143073											
LMAN1	3998	broad.mit.edu	37	chr18	57026338	57026338	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttgaagctgtatttgtactCgaaacggcgatgtggcaacg	12	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57026338	G	G	57026338	3	3	175	1	0	0	0	0	1	0	0	0	8910	893	31	4	1445	4	LMAN1	18	57026338	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	8322540	57026338	21050910	1039	143074											
SERPINB10	5273	broad.mit.edu	37	chr18	61600477	61600477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgtgagggtgtttccaGtgtttactaagaaaagaact	11	5	0	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61600477	T	T	61600477	1	4	175	0	1	0	0	0	0	0	0	0	14210	1044	36	3		3	SERPINB10	18	61600477	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4574139	61600477	16476771	1040	143075											
CDH19	28513	broad.mit.edu	37	chr18	64239490	64239490	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttcagaggaaacaggaCgtcactaacaaaaatcttgc	7	10	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64239490	A	A	64239490	1	1	175	0	1	0	0	0	0	0	0	0	3134	551	19	3		3	CDH19	18	64239490	5'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	2639013	64239490	13837758	1041	143076											
NETO1	81832	broad.mit.edu	37	chr18	70532264	70532264	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggacattcttataatatCcattagtaaattaattttta	4	4	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70532264	A	A	70532264	1	1	175	0	1	0	0	0	0	0	0	0	10434	870	30	3		3	NETO1	18	70532264	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	6292774	70532264	7544984	1042	143077											
SALL3	27164	broad.mit.edu	37	chr18	76753743	76753743	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggccaccgccgagtccccAcagtcgctcctcggcgggcc	12	20	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76753743	G	G	76753743	2	3	175	1	0	0	0	0	0	0	0	1	13923	146	6	5		5	SALL3	18	76753743	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	6221479	76753743	1323505	1043	143078											
PALM	5064	broad.mit.edu	37	chr19	740338	740338	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggccgtggtgtaaccccgtGactctcgtgccagccatgta	12	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	740338	T	T	740338	1	4	175	0	1	0	0	0	0	0	0	0	11502	1305	45	3		3	PALM	19	740338	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08		740338	58388645	1044	143079											
EFNA2	1943	broad.mit.edu	37	chr19	1295874	1295874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgagtggggtcgggcCggggctgccggggcccgagt	21	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1295874	A	A	1295874	1	1	175	0	1	0	0	0	0	0	0	0	4991	667	23	1		1	EFNA2	19	1295874	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	555536	1295874	57833109	1045	143080											
THOP1	7064	broad.mit.edu	37	chr19	2790467	2790467	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctccgtgctctgtggtaaAcgacctgcggtgggacctga	13	11	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2790467	G	G	2790467	3	3	175	1	0	0	0	0	1	0	0	0	15994	43	2	5	71	5	THOP1	19	2790467	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	1494593	2790467	56338516	1046	143081											
ATCAY	85300	broad.mit.edu	37	chr19	3917687	3917687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagggatttccccaaaaaGtatatctcaggggaaaggaa	11	6	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3917687	T	T	3917687	1	4	175	0	1	0	0	0	0	0	0	0	1081	1044	36	3		3	ATCAY	19	3917687	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1127220	3917687	55211296	1047	143082											
C3	718	broad.mit.edu	37	chr19	6686481	6686481	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttcatcaactctcacttctCcctttgaaatgaatgcttaa	3	11	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6686481	A	A	6686481	1	1	175	0	1	0	0	0	0	0	0	0	2226	870	30	3		3	C3	19	6686481	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2768794	6686481	52442502	1048	143083											
MYO1F	4542	broad.mit.edu	37	chr19	8591385	8591385	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaccgtgagggtccgacCgccaaccttgagcactgcca	12	15	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8591385	T	T	8591385	3	4	175	1	0	0	0	0	1	0	0	0	10167	652	23	4	594	4	MYO1F	19	8591385	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1904904	8591385	50537598	1049	143084											
OR1M1	125963	broad.mit.edu	37	chr19	9203967	9203967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctcaattcatcctcctggGactctcagaaaagccagagc	7	13	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9203967	T	T	9203967	3	4	175	1	0	0	0	0	1	0	0	0	11062	1174	41	3	49	3	OR1M1	19	9203967	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	612582	9203967	49925016	1050	143085											
COL5A3	50509	broad.mit.edu	37	chr19	10114434	10114434	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctagagcatcccaccagcaGagaccccatcattcaggtca	7	15	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10114434	T	T	10114434	1	4	175	0	1	0	0	0	0	0	0	0	3730	957	33	3		3	COL5A3	19	10114434	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	910467	10114434	49014549	1051	143086											
TYK2	7297	broad.mit.edu	37	chr19	10463007	10463007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccgcccgcctcggcctccCaaagtgctgggattacaggc	11	16	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10463007	A	A	10463007	1	1	175	0	1	0	0	0	0	0	0	0	16936	609	21	2		2	TYK2	19	10463007	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	348573	10463007	48665976	1052	143087											
CACNA1A	773	broad.mit.edu	37	chr19	13445409	13445409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtttGtgtgtgtgtgtgtgtttggg	20	0	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13445409	T	T	13445409	1	4	175	0	1	0	0	0	0	0	0	0	2564	1392	48	3		3	CACNA1A	19	13445409	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2982402	13445409	45683574	1053	143088											
OR7A10	390892	broad.mit.edu	37	chr19	14952191	14952191	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccatgtgtgtacaaaaggGcagtggcaacaccattaagc	10	9	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14952191	C	C	14952191	3	2	175	1	0	0	0	0	1	0	0	0	11308	1203	42	4	434	4	OR7A10	19	14952191	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1506782	14952191	44176792	1054	143089											
OR7A17	26333	broad.mit.edu	37	chr19	14991871	14991871	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtacaaaaaagcacatctgGgtgatgcagcctgcataggt	11	8	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14991871	C	C	14991871	2	2	175	1	0	0	0	0	0	0	0	1	11309	1219	43	4		4	OR7A17	19	14991871	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	39680	14991871	44137112	1055	143090											
OR7C2	26658	broad.mit.edu	37	chr19	15052376	15052376	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggactctgacatgcagcttCtcctccatgggctgttcctc	9	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15052376	T	T	15052376	3	4	175	1	0	0	0	0	1	0	0	0	11312	913	32	4	78	4	OR7C2	19	15052376	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	60505	15052376	44076607	1056	143091											
BRD4	23476	broad.mit.edu	37	chr19	15375583	15375583	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcccttctttgtctgccAagaacacggacgccaacagg	8	15	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15375583	C	C	15375583	1	2	175	0	1	0	0	0	0	0	0	0	1513	145	5	5		5	BRD4	19	15375583	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	323207	15375583	43753400	1057	143092											
PGLYRP2	114770	broad.mit.edu	37	chr19	15586354	15586354	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggaacttcctcacccaggAaggcctcagtgaattccttg	11	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15586354	G	G	15586354	3	3	175	1	0	0	0	0	1	0	0	0	11889	246	9	5	619	5	PGLYRP2	19	15586354	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	210771	15586354	43542629	1058	143093											
JAK3	3718	broad.mit.edu	37	chr19	17937431	17937431	+	3'UTR	DEL	G	-	-													ccccccaaatgcaatgtcatGggggtgttcctgaagtagag							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17937431	-	-	17937431	6	5	175	0	1	1	0	1	0	0	0	0	8009	1363	47	0		0	JAK3	19	17937431	3'UTR	DEL	G	TCGA-55-1592-01A-01D-0969-08	2351077	17937431	41191552	1059	143094											
IL12RB1	3594	broad.mit.edu	37	chr19	18194265	18194265	+	Frame_Shift_Del	DEL	G	-	-													agtctgcatccggatatggcGggtcctgaaaacagcactca					rs113524129	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18194265	-	-	18194265	7	5	175	1	0	1	0	1	0	0	0	0	7696	1116	39	0	2080	0	IL12RB1	19	18194265	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	256834	18194265	40934718	1060	143095											
RAB3A	5864	broad.mit.edu	37	chr19	18311291	18311291	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggtcagagaggacctgCacataaggccctcgaagagg	14	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18311291	T	T	18311291	1	4	175	0	1	0	0	0	0	0	0	0	13039	725	25	4		4	RAB3A	19	18311291	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	117026	18311291	40817692	1061	143096											
MAG	4099	broad.mit.edu	37	chr19	35803260	35803260	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggcctcagtgtgccctcctCtgggccctccttgggccctg	13	17	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35803260	A	A	35803260	1	1	175	0	1	0	0	0	0	0	0	0	9250	928	32	3		3	MAG	19	35803260	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	17491969	35803260	23325723	1062	143097											
FFAR2	2867	broad.mit.edu	37	chr19	35941684	35941684	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaggcggagcaggaagGctcccatccagattcagaaa	15	9	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35941684	T	T	35941684	1	4	175	0	1	0	0	0	0	0	0	0	5885	1218	42	3		3	FFAR2	19	35941684	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	138424	35941684	23187299	1063	143098											
C19orf55	148137	broad.mit.edu	37	chr19	36250456	36250456	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggaagacatgtgatgagaGatagggatgagagatttaag	15	1	0	6			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36250456	T	T	36250456	1	4	175	0	1	0	0	0	0	0	0	0	1956	957	33	3		3	C19orf55	19	36250456	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	308772	36250456	22878527	1064	143099											
ZNF569	148266	broad.mit.edu	37	chr19	37903769	37903769	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttcacctgtatggcctctCatgtgcacaataagggaagt	9	9	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37903769	A	A	37903769	3	1	175	1	0	0	0	0	1	0	0	0	18127	826	29	3	273	3	ZNF569	19	37903769	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1653313	37903769	21225214	1065	143100											
ZNF540	163255	broad.mit.edu	37	chr19	38089281	38089281	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcctctaactcaggcttCtcagaactttgcttctccag	5	14	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38089281	G	G	38089281	1	3	175	0	1	0	0	0	0	0	0	0	18102	928	32	4		4	ZNF540	19	38089281	5'UTR	SNP	C	TCGA-55-1592-01A-01D-0969-08	185512	38089281	21039702	1066	143101											
RYR1	6261	broad.mit.edu	37	chr19	38931276	38931276	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgggttgatcttgtcaGtcactgtctttttcataagg	12	6	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38931276	C	C	38931276	1	2	175	0	1	0	0	0	0	0	0	0	13879	1044	36	4		4	RYR1	19	38931276	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	841995	38931276	20197707	1067	143102											
MAP4K1	11184	broad.mit.edu	37	chr19	39090803	39090803	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggtgctggtctggaggcaCagacaaggacgctgggaccg	17	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39090803	G	G	39090803	1	3	175	0	1	0	0	0	0	0	0	0	9351	493	17	4		4	MAP4K1	19	39090803	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	159527	39090803	20038180	1068	143103											
FCGBP	8857	broad.mit.edu	37	chr19	40367914	40367914	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttctgggcaggtgatcTctgtgggcagacgaaggagc	16	7	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40367914	C	C	40367914	3	2	175	1	0	0	0	0	1	0	0	0	5835	1565	54	5	3203	5	FCGBP	19	40367914	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	1277111	40367914	18761069	1069	143104											
MIA	8190	broad.mit.edu	37	chr19	41281318	41281318	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacttctaggtggtgtgggcGaagtttgggactggtttagg	17	4	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41281318	A	A	41281318	1	1	175	0	1	0	0	0	0	0	0	0	9656	1073	37	4		4	MIA	19	41281318	5'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	913404	41281318	17847665	1070	143105											
CYP2A7	1549	broad.mit.edu	37	chr19	41386491	41386491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagggtggcgatggcaaagCgcaggagctgcttggcgcgc	18	10	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41386491	A	A	41386491	3	1	175	1	0	0	0	0	1	0	0	0	4196	768	27	3	1126	3	CYP2A7	19	41386491	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	105173	41386491	17742492	1071	143106											
C19orf61	56006	broad.mit.edu	37	chr19	44235832	44235832	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgtagtggaacctgtgAggaggccaacagtcagggct	16	9	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44235832	T	T	44235832	1	4	175	0	1	0	0	0	0	0	0	0	1962	319	11	5		5	C19orf61	19	44235832	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	2849341	44235832	14893151	1072	143107											
RTN2	6253	broad.mit.edu	37	chr19	45991669	45991669	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggaccccggttctggaaGgagatggtcagacccccatg	14	11	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45991669	A	A	45991669	1	1	175	0	1	0	0	0	0	0	0	0	13837	1015	35	4		4	RTN2	19	45991669	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1755837	45991669	13137314	1073	143108											
FOXA3	3171	broad.mit.edu	37	chr19	46376130	46376130	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcactggcctggagctcccAggggagctgaagctggacgc	15	12	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46376130	T	T	46376130	2	4	175	1	0	0	0	0	0	0	0	1	6049	175	7	5		5	FOXA3	19	46376130	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	384461	46376130	12752853	1074	143109											
DHX34	9704	broad.mit.edu	37	chr19	47884643	47884643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctgcccatcccatgatgGtctcctgtgcgtgtgagcac	11	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47884643	T	T	47884643	1	4	175	0	1	0	0	0	0	0	0	0	4547	1276	44	3		3	DHX34	19	47884643	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1508513	47884643	11244340	1075	143110											
LIG1	3978	broad.mit.edu	37	chr19	48620931	48620931	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtagatgggagagagggaGaggtcagcgcacttcacctc	17	8	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48620931	A	A	48620931	2	1	175	1	0	0	0	0	0	0	0	1	8853	929	33	4		4	LIG1	19	48620931	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	736288	48620931	10508052	1076	143111											
TRPM4	54795	broad.mit.edu	37	chr19	49684472	49684472	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgactgctttaagaccCccacactctgcccagtagca	7	16	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49684472	T	T	49684472	1	4	175	0	1	0	0	0	0	0	0	0	16713	638	22	4		4	TRPM4	19	49684472	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1063541	49684472	9444511	1077	143112											
SLC6A16	28968	broad.mit.edu	37	chr19	49814442	49814442	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgagcctctgcaacccGggctgctgaaacttgggcct	13	14	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49814442	A	A	49814442	3	1	175	1	0	0	0	0	1	0	0	0	14793	1115	39	4	2091	4	SLC6A16	19	49814442	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	129970	49814442	9314541	1078	143113											
CCDC155	147872	broad.mit.edu	37	chr19	49912885	49912885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactccccaaccccagccCcacaccagcccttttctatc	2	24	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49912885	T	T	49912885	1	4	175	0	1	0	0	0	0	0	0	0	2815	638	22	4		4	CCDC155	19	49912885	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	98443	49912885	9216098	1079	143114											
POLD1	5424	broad.mit.edu	37	chr19	50905742	50905742	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacggacatcgtcggctgcAactggctggagctcccagct	12	14	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50905742	G	G	50905742	3	3	175	1	0	0	0	0	1	0	0	0	12285	130	5	5	812	5	POLD1	19	50905742	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	992857	50905742	8223241	1080	143115											
LILRB2	10288	broad.mit.edu	37	chr19	54783844	54783844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtactcctgggcttcaaGgctcccctgacaactgaggg	12	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54783844	T	T	54783844	3	4	175	1	0	0	0	0	1	0	0	0	8863	1000	35	2	1683	2	LILRB2	19	54783844	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3878102	54783844	4345139	1081	143116											
FCAR	2204	broad.mit.edu	37	chr19	55386658	55386658	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgccagctcttctttaTatatctggtgggattgagct	9	7	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55386658	C	C	55386658	1	2	175	0	1	0	0	0	0	0	0	0	5830	1421	49	5		5	FCAR	19	55386658	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	602814	55386658	3742325	1082	143117											
NLRP8	126205	broad.mit.edu	37	chr19	56490839	56490839	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaccaacatctgagacatCtggacttgagcaagaatgcg	9	9	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56490839	A	A	56490839	3	1	175	1	0	0	0	0	1	0	0	0	10578	912	32	3	2990	3	NLRP8	19	56490839	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1104181	56490839	2638144	1083	143118											
C20orf96	140680	broad.mit.edu	37	chr20	258068	258068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggacaggaggcaagacCttccctcaagcacctgggcc	13	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	258068	A	A	258068	1	1	175	0	1	0	0	0	0	0	0	0	2144	696	24	2		2	C20orf96	20	258068	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08		258068	62767452	1084	143119											
FKBP1A	2280	broad.mit.edu	37	chr20	1352998	1352998	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggatggtattgactttccaGtgactttgcagctgcccagg	12	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1352998	C	C	1352998	1	2	175	0	1	0	0	0	0	0	0	0	5963	1044	36	4		4	FKBP1A	20	1352998	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1094930	1352998	61672522	1085	143120											
PDYN	5173	broad.mit.edu	37	chr20	1960690	1960690	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacagatcacaaactgctGctgctgctgctgctgccgct	11	13	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1960690	T	T	1960690	1	4	175	0	1	0	0	0	0	0	0	0	11793	1334	46	3		3	PDYN	20	1960690	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	607692	1960690	61064830	1086	143121											
TGM6	343641	broad.mit.edu	37	chr20	2375094	2375094	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccctgtcctctccccacCcagggatcagagtcaccaag	7	18	4	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2375094	G	G	2375094	1	3	175	0	1	0	0	0	0	0	0	0	15957	638	22	4		4	TGM6	20	2375094	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	414404	2375094	60650426	1087	143122											
ZNF343	79175	broad.mit.edu	37	chr20	2464027	2464027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgtcacaaaagcctcgcCcacattccctgcaaatataa	4	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2464027	A	A	2464027	3	1	175	1	0	0	0	0	1	0	0	0	17984	623	22	2	223	2	ZNF343	20	2464027	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	88933	2464027	60561493	1088	143123											
ATRN	8455	broad.mit.edu	37	chr20	3529820	3529820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattatgtttttattaggtcCtggatgttcagttcctgtac	8	7	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3529820	A	A	3529820	3	1	175	1	0	0	0	0	1	0	0	0	1210	681	24	2	969	2	ATRN	20	3529820	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1065793	3529820	59495700	1089	143124											
SIGLEC1	6614	broad.mit.edu	37	chr20	3672716	3672716	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctgtggaccccgctgctCgtggccagcaccttgccatc	11	16	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3672716	A	A	3672716	2	1	175	1	0	0	0	0	0	0	0	1	14418	871	31	3		3	SIGLEC1	20	3672716	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	142896	3672716	59352804	1090	143125											
PRND	23627	broad.mit.edu	37	chr20	4705020	4705020	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagcaaaggagctcggtgttTgagttaaccctgcacaaccc	10	11	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4705020	A	A	4705020	1	1	175	0	1	0	0	0	0	0	0	0	12649	1827	63	5		5	PRND	20	4705020	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	1032304	4705020	58320500	1091	143126											
PLCB4	5332	broad.mit.edu	37	chr20	9343491	9343491	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctaataaaaactgctctAtttgactccagcagatttgc	5	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9343491	G	G	9343491	1	3	175	0	1	0	0	0	0	0	0	0	12125	464	16	5		5	PLCB4	20	9343491	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4638471	9343491	53682029	1092	143127											
SSTR4	6754	broad.mit.edu	37	chr20	23016252	23016252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccggggacgcgcgggcGgcgggcatggtcgctatcca	20	13	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23016252	T	T	23016252	2	4	175	1	0	0	0	0	0	0	0	1	15318	1103	39	1		1	SSTR4	20	23016252	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	13672761	23016252	40009268	1093	143128											
BCL2L1	598	broad.mit.edu	37	chr20	30253651	30253651	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgggcaggtgggcatgGgctgcatgtagtggttctcc	18	7	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30253651	T	T	30253651	1	4	175	0	1	0	0	0	0	0	0	0	1372	1247	43	2		2	BCL2L1	20	30253651	3'UTR	SNP	G	TCGA-55-1592-01A-01D-0969-08	7237399	30253651	32771869	1094	143129											
SUN5	140732	broad.mit.edu	37	chr20	31573433	31573433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaccaagctgcattcagccCctccagcctgcaagtgttgt	8	14	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31573433	A	A	31573433	1	1	175	0	1	0	0	0	0	0	0	0	15512	638	22	2		2	SUN5	20	31573433	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1319782	31573433	31452087	1095	143130											
C20orf185	359710	broad.mit.edu	37	chr20	31661396	31661396	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacagaatgctgttgtgctGaccgtggcatcctgaggctg	13	9	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31661396	T	T	31661396	2	4	175	1	0	0	0	0	0	0	0	1	2119	1277	45	3		3	C20orf185	20	31661396	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	87963	31661396	31364124	1096	143131											
C20orf186	149954	broad.mit.edu	37	chr20	31680430	31680430	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgactctactgcagaagcAgcatgctctagacctggata	10	11	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31680430	T	T	31680430	3	4	175	1	0	0	0	0	1	0	0	0	2120	188	7	5	1344	5	C20orf186	20	31680430	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	19034	31680430	31345090	1097	143132											
PHF20	51230	broad.mit.edu	37	chr20	34438823	34438823	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgactgagtttgtttttGaccaagggaaacatcgtgaa	11	5	0	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34438823	T	T	34438823	1	4	175	0	1	0	0	0	0	0	0	0	11926	1305	45	3		3	PHF20	20	34438823	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2758393	34438823	28586697	1098	143133											
PLCG1	5335	broad.mit.edu	37	chr20	39791269	39791269	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctgactggcactcctgctCtataccatgcaggacctgga	10	14	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39791269	G	G	39791269	1	3	175	0	1	0	0	0	0	0	0	0	12130	928	32	4		4	PLCG1	20	39791269	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5352446	39791269	23234251	1099	143134											
EMILIN3	90187	broad.mit.edu	37	chr20	39990391	39990391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggcatcagagtactgGctgacagagtcactgaggcc	13	9	2	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39990391	T	T	39990391	3	4	175	1	0	0	0	0	1	0	0	0	5137	1194	42	3	486	3	EMILIN3	20	39990391	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	199122	39990391	23035129	1100	143135											
CHD6	84181	broad.mit.edu	37	chr20	40125887	40125887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctagactagttttgttgCaaatcagcacacatttatca	5	8	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40125887	A	A	40125887	1	1	175	0	1	0	0	0	0	0	0	0	3360	725	25	3		3	CHD6	20	40125887	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	135496	40125887	22899633	1101	143136											
L3MBTL	26013	broad.mit.edu	37	chr20	42143558	42143558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccgatgcggagatggacCgaggcggaggcagggcctga	18	10	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42143558	A	A	42143558	1	1	175	0	1	0	0	0	0	0	0	0	8663	667	23	1		1	L3MBTL	20	42143558	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	2017671	42143558	20881962	1102	143137											
JPH2	57158	broad.mit.edu	37	chr20	42814791	42814791	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttattagctccatctttActacaagaaaatggaagctc	5	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42814791	G	G	42814791	1	3	175	0	1	0	0	0	0	0	0	0	8031	406	14	5		5	JPH2	20	42814791	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	671233	42814791	20210729	1103	143138											
PI3	5266	broad.mit.edu	37	chr20	43803721	43803721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggccaggacagggagCacttctgaagcagtaggcag	15	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43803721	T	T	43803721	1	4	175	0	1	0	0	0	0	0	0	0	11965	725	25	4		4	PI3	20	43803721	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	988930	43803721	19221799	1104	143139											
RBPJL	11317	broad.mit.edu	37	chr20	43940361	43940361	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaccacgagattgggcCcgagacggggcggttcgcag	19	10	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43940361	T	T	43940361	1	4	175	0	1	0	0	0	0	0	0	0	13270	638	22	4		4	RBPJL	20	43940361	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	136640	43940361	19085159	1105	143140											
PIGT	51604	broad.mit.edu	37	chr20	44047576	44047576	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcgactccaccaacacAgtcactcccactgcctcctt	3	19	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44047576	T	T	44047576	2	4	175	1	0	0	0	0	0	0	0	1	11994	175	7	5		5	PIGT	20	44047576	Silent	SNP	A	TCGA-55-1592-01A-01D-0969-08	107215	44047576	18977944	1106	143141											
WFDC11	259239	broad.mit.edu	37	chr20	44278014	44278014	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacatttggctttccccagCattcttcaagtaacaattcc	5	12	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44278014	T	T	44278014	3	4	175	1	0	0	0	0	1	0	0	0	17476	710	25	4	146	4	WFDC11	20	44278014	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	230438	44278014	18747506	1107	143142											
SLC12A5	57468	broad.mit.edu	37	chr20	44671860	44671860	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggatgacctcggtgggcCtggccgatggcactcctatc	15	12	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44671860	A	A	44671860	3	1	175	1	0	0	0	0	1	0	0	0	14499	680	24	2	1294	2	SLC12A5	20	44671860	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	393846	44671860	18353660	1108	143143											
TMEM189-UBE2V1	387522	broad.mit.edu	37	chr20	48741764	48741764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgggagagagtagtcaaGgggacattggaagagagctg	18	3	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48741764	A	A	48741764	1	1	175	0	1	0	0	0	0	0	0	0	16235	1015	35	4		4	TMEM189-UBE2V1	20	48741764	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4069904	48741764	14283756	1109	143144											
BCAS1	8537	broad.mit.edu	37	chr20	52645564	52645564	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaagccgggaaattcaggCactaataatggactccagac	10	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52645564	T	T	52645564	1	4	175	0	1	0	0	0	0	0	0	0	1355	725	25	4		4	BCAS1	20	52645564	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3903800	52645564	10379956	1110	143145											
VAPB	9217	broad.mit.edu	37	chr20	57015900	57015900	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgagaactactttacttTgcataaaaaagtccattatt	5	7	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57015900	C	C	57015900	1	2	175	0	1	0	0	0	0	0	0	0	17249	1827	63	5		5	VAPB	20	57015900	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	4370336	57015900	6009620	1111	143146											
CTSZ	1522	broad.mit.edu	37	chr20	57571564	57571564	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccactcgcgcggtggctgaGacagctggagcaaggaaccc	15	13	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57571564	C	C	57571564	1	2	175	0	1	0	0	0	0	0	0	0	4077	957	33	4		4	CTSZ	20	57571564	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	555664	57571564	5453956	1112	143147											
PHACTR3	116154	broad.mit.edu	37	chr20	58318161	58318161	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccttggttttcgtcttccaGatgagatggaccaaacgccc	9	13	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58318161	A	A	58318161	5	1	175	1	0	0	0	0	0	0	1	0	11906	956	33	4	124	4	PHACTR3	20	58318161	Splice_Site	SNP	G	TCGA-55-1592-01A-01D-0969-08	746597	58318161	4707359	1113	143148											
GTPBP5	26164	broad.mit.edu	37	chr20	60774369	60774369	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatgatgtaattcagaaaaGtaatgatgtaactcttaaat	6	3	2	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60774369	C	C	60774369	1	2	175	0	1	0	0	0	0	0	0	0	6948	1044	36	4		4	GTPBP5	20	60774369	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2456208	60774369	2251151	1114	143149											
LAMA5	3911	broad.mit.edu	37	chr20	60890128	60890128	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggcccaggtcctggcccCgcaggccctcgtactggccc	12	20	0	0	rs149325805		TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60890128	T	T	60890128	3	4	175	1	0	0	0	0	1	0	0	0	8681	652	23	4	3172	4	LAMA5	20	60890128	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	115759	60890128	2135392	1115	143150											
C20orf151	140893	broad.mit.edu	37	chr20	60987502	60987502	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaggaaggactcactcCggccaccctcgccctcctct	8	19	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60987502	G	G	60987502	1	3	175	0	1	0	0	0	0	0	0	0	2113	667	23	4		4	C20orf151	20	60987502	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	97374	60987502	2038018	1116	143151											
COL20A1	57642	broad.mit.edu	37	chr20	61944620	61944620	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtaggtgcccctccacttCccctctgctgggtgtggggc	13	15	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61944620	T	T	61944620	1	4	175	0	1	0	0	0	0	0	0	0	3711	870	30	4		4	COL20A1	20	61944620	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	957118	61944620	1080900	1117	143152											
TPTE	7179	broad.mit.edu	37	chr21	10969905	10969905	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatggatgaatggatggatGgatggatggatggatggatg	20	0	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10969905	T	T	10969905	1	4	175	0	1	0	0	0	0	0	0	0	16554	1363	47	2		2	TPTE	21	10969905	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08		10969905	37159990	1118	143153											
RBM11	54033	broad.mit.edu	37	chr21	15593400	15593400	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaccatgaagtaacctgttActctgtttctttcaaaggga	8	8	3	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15593400	T	T	15593400	1	4	175	0	1	0	0	0	0	0	0	0	13220	406	14	5		5	RBM11	21	15593400	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4623495	15593400	32536495	1119	143154											
GRIK1	2897	broad.mit.edu	37	chr21	30959584	30959584	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagaacactaggcaaaactAaaagtacactttaaagttcc	5	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30959584	G	G	30959584	1	3	175	0	1	0	0	0	0	0	0	0	6839	377	13	5		5	GRIK1	21	30959584	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	15366184	30959584	17170311	1120	143155											
DSCAM	1826	broad.mit.edu	37	chr21	41683912	41683912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agataaaactgaatttctaaGttccagttattttcgaaata	5	5	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41683912	T	T	41683912	1	4	175	0	1	0	0	0	0	0	0	0	4808	1044	36	3		3	DSCAM	21	41683912	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	10724328	41683912	6445983	1121	143156											
BACE2	25825	broad.mit.edu	37	chr21	42598306	42598306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctggccccttggctggtGtgctgggccggggcactgca	18	13	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42598306	T	T	42598306	1	4	175	0	1	0	0	0	0	0	0	0	1287	1392	48	3		3	BACE2	21	42598306	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	914394	42598306	5531589	1122	143157											
KRTAP10-2	386679	broad.mit.edu	37	chr21	45970637	45970637	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcgggagcacacggggcgGcagaggagggacacagagga	22	8	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45970637	C	C	45970637	3	2	175	1	0	0	0	0	1	0	0	0	8580	1195	42	4	66	4	KRTAP10-2	21	45970637	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3372331	45970637	2159258	1123	143158											
PRODH	5625	broad.mit.edu	37	chr22	18905888	18905888	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggggtcctcatagccgatCtctgccgcacgggctcgctc	12	15	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18905888	T	T	18905888	2	4	175	1	0	0	0	0	0	0	0	1	12654	912	32	4		4	PRODH	22	18905888	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08		18905888	32398678	1124	143159											
HIRA	7290	broad.mit.edu	37	chr22	19348893	19348893	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagaaacgttcctgagccTtgctctaacactacggggta	10	12	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19348893	G	G	19348893	1	3	175	0	1	0	0	0	0	0	0	0	7187	1624	56	5		5	HIRA	22	19348893	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	443005	19348893	31955673	1125	143160											
RTDR1	27156	broad.mit.edu	37	chr22	23482595	23482595	+	Frame_Shift_Del	DEL	G	-	-													gggaagctccaaggagttctGggaatgggccatctttcccc							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23482595	-	-	23482595	7	5	175	1	0	1	0	1	0	0	0	0	13830	1357	47	0	1057	0	RTDR1	22	23482595	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	4133702	23482595	27821971	1126	143161											
CABIN1	23523	broad.mit.edu	37	chr22	24487906	24487906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccgtccttcaacctgccgCaaacttatctgtgttgagca	8	13	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24487906	A	A	24487906	1	1	175	0	1	0	0	0	0	0	0	0	2554	725	25	3		3	CABIN1	22	24487906	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1005311	24487906	26816660	1127	143162											
EMID1	129080	broad.mit.edu	37	chr22	29630395	29630395	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggatcccttagtcccagattCctcctgtgactccatcccct	6	17	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29630395	T	T	29630395	1	4	175	0	1	0	0	0	0	0	0	0	5133	870	30	4		4	EMID1	22	29630395	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5142489	29630395	21674171	1128	143163											
PLA2G3	50487	broad.mit.edu	37	chr22	31532872	31532872	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcaggcagcccaccccgCgagggttcaaaggggcctca	14	15	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31532872	T	T	31532872	1	4	175	0	1	0	0	0	0	0	0	0	12095	783	27	4		4	PLA2G3	22	31532872	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1902477	31532872	19771694	1129	143164											
SLC5A1	6523	broad.mit.edu	37	chr22	32439304	32439304	+	Frame_Shift_Del	DEL	G	-	-													tggagccccaagaccaccgcGgtcacccggcctgttgagac					rs148720069	byFrequency	TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32439304	-	-	32439304	7	5	175	1	0	1	0	1	0	0	0	0	14775	1103	39	0	38	0	SLC5A1	22	32439304	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	906432	32439304	18865262	1130	143165											
CYTH4	27128	broad.mit.edu	37	chr22	37697075	37697075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggtgccaggaggggaGtgggacccagggctccggga	19	11	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37697075	T	T	37697075	1	4	175	0	1	0	0	0	0	0	0	0	4239	1044	36	3		3	CYTH4	22	37697075	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5257771	37697075	13607491	1131	143166											
LGALS2	3957	broad.mit.edu	37	chr22	37966600	37966600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttgacctctgaccctgGgctgaagcacaggtgatctt	10	13	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37966600	T	T	37966600	3	4	175	1	0	0	0	0	1	0	0	0	8814	1232	43	2	174	2	LGALS2	22	37966600	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	269525	37966600	13337966	1132	143167											
GCAT	23464	broad.mit.edu	37	chr22	38212280	38212280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctgccctgtgatgctgGgtgatgcccggctggcctct	13	14	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38212280	T	T	38212280	3	4	175	1	0	0	0	0	1	0	0	0	6346	1232	43	2	1168	2	GCAT	22	38212280	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	245680	38212280	13092286	1133	143168											
CACNA1I	8911	broad.mit.edu	37	chr22	40052575	40052575	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagggacggtgccctgactCcctcaccactgcccaccctg	10	19	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40052575	T	T	40052575	1	4	175	0	1	0	0	0	0	0	0	0	2572	870	30	4		4	CACNA1I	22	40052575	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1840295	40052575	11251991	1134	143169											
PHF21B	112885	broad.mit.edu	37	chr22	45309533	45309533	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagatagaacagttgagacCtgggcttgcttggcgaggcc	15	8	0	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45309533	A	A	45309533	1	1	175	0	1	0	0	0	0	0	0	0	11929	696	24	2		2	PHF21B	22	45309533	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	5256958	45309533	5995033	1135	143170											
WNT7B	7477	broad.mit.edu	37	chr22	46319011	46319011	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccatgggcttctgatagcTgcgcagctgtttgatgcgca	12	11	1	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46319011	A	A	46319011	3	1	175	1	0	0	0	0	1	0	0	0	17522	1580	55	5	278	5	WNT7B	22	46319011	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	1009478	46319011	4985555	1136	143171											
FAM19A5	25817	broad.mit.edu	37	chr22	49042450	49042450	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagattgtgaccttggacCgggacagcagccagcctcgg	15	11	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49042450	A	A	49042450	2	1	175	1	0	0	0	0	0	0	0	1	5582	643	23	1		1	FAM19A5	22	49042450	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2723439	49042450	2262116	1137	143172											
ODF3B	440836	broad.mit.edu	37	chr22	50969207	50969207	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggagcgaagtccgcgcCagaatcgtgaactggggggc	19	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50969207	A	A	50969207	2	1	175	1	0	0	0	0	0	0	0	1	10925	581	21	2		2	ODF3B	22	50969207	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	1926757	50969207	335359	1138	143173											
ASMT	438	broad.mit.edu	37	chrX	1743294	1743294	+	Intron	DEL	G	-	-													cctggcagacgccgtgaggtGggggctgcccccaggcagat							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1743294	-	-	1743294	6	5	175	0	1	1	0	1	0	0	0	0	1049	1363	47	0		0	ASMT	23	1743294	Intron	DEL	G	TCGA-55-1592-01A-01D-0969-08		1743294	153527266	1139	143174											
GLRA2	2742	broad.mit.edu	37	chrX	14627186	14627186	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttgatccagatgtacatCccaagcctgcttatagtaat	6	9	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14627186	T	T	14627186	2	4	175	1	0	0	0	0	0	0	0	1	6519	845	30	4		4	GLRA2	23	14627186	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	12883892	14627186	140643374	1140	143175											
SYAP1	94056	broad.mit.edu	37	chrX	16773137	16773137	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attaagcagtcagcccagctCacggccctggctgcccaaca	9	16	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16773137	T	T	16773137	2	4	175	1	0	0	0	0	0	0	0	1	15544	813	29	4		4	SYAP1	23	16773137	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	2145951	16773137	138497423	1141	143176											
SAT1	6303	broad.mit.edu	37	chrX	23801932	23801932	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagatctgctagaagatgGttttggagagcacccctttt	11	8	1	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23801932	A	A	23801932	3	1	175	1	0	0	0	0	1	0	0	0	13963	1261	44	4	144	4	SAT1	23	23801932	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	7028795	23801932	131468628	1142	143177											
IL1RAPL1	11141	broad.mit.edu	37	chrX	28677275	28677275	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacacaggttggtgtcttcAaaaaggccaaccagctaggc	11	11	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28677275	G	G	28677275	1	3	175	0	1	0	0	0	0	0	0	0	7731	145	5	5		5	IL1RAPL1	23	28677275	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	4875343	28677275	126593285	1143	143178											
MAGEB3	4114	broad.mit.edu	37	chrX	30254960	30254961	+	Missense_Mutation	DNP	TA	GT	GT													ccagtgcgttccagttctggTatgaagaggctttgagagat							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	30254961	GT	GT	30254960	3	3	175	1	0	0	0	0	1	0	0	0	9269	1638	57	5	921	5	MAGEB3	23	30254960	Missense_Mutation	DNP	TA	TCGA-55-1592-01A-01D-0969-08	1577685	30254960	125015600	1144	143179											
DMD	1756	broad.mit.edu	37	chrX	31341838	31341838	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcgcaaacaggaaagaCaacattaatctccagaatta	5	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31341838	G	G	31341838	1	3	175	0	1	0	0	0	0	0	0	0	4620	493	17	4		4	DMD	23	31341838	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	1086878	31341838	123928722	1145	143180											
FAM47C	442444	broad.mit.edu	37	chrX	37028810	37028810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagtgtcccatctccaccCagagcttcccaagcctcggg	10	16	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37028810	A	A	37028810	3	1	175	1	0	0	0	0	1	0	0	0	5622	594	21	2	2329	2	FAM47C	23	37028810	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	5686972	37028810	118241750	1146	143181											
USP9X	8239	broad.mit.edu	37	chrX	41000347	41000347	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgaaaaaagaagcaaagaAtgaagccaaaaatgatgctc	8	6	0	5			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41000347	G	G	41000347	3	3	175	1	0	0	0	0	1	0	0	0	17217	101	4	5	925	5	USP9X	23	41000347	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	3971537	41000347	114270213	1147	143182											
HDAC6	10013	broad.mit.edu	37	chrX	48661516	48661516	+	Intron	DEL	T	-	-													taaaatggatctgtgtctccTtttttttttcctctgcagga							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48661516	-	-	48661516	6	5	175	0	1	1	0	1	0	0	0	0	7078	1624	56	0		0	HDAC6	23	48661516	Intron	DEL	T	TCGA-55-1592-01A-01D-0969-08	7661169	48661516	106609044	1148	143183											
GPKOW	27238	broad.mit.edu	37	chrX	48973289	48973289	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaggcacactgctgcccctCcctgctgcagatctaaaacc	7	18	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48973289	T	T	48973289	1	4	175	0	1	0	0	0	0	0	0	0	6678	870	30	4		4	GPKOW	23	48973289	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	311773	48973289	106297271	1149	143184			3	113		5	5	163	C		5.987467e-11
GPKOW	27238	broad.mit.edu	37	chrX	48973302	48973302	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcccctccctgctgcagatCtaaaaccaccccattagcca	5	18	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48973302	T	T	48973302	1	4	175	0	1	0	0	0	0	0	0	0	6678	928	32	4		4	GPKOW	23	48973302	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	13	48973302	106297258	1150	143185			3	113		5	5	163	C		5.987467e-11
GPKOW	27238	broad.mit.edu	37	chrX	48973377	48973377	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctagctctacaagaggctCactcactgagatccaaggtg	9	13	3	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48973377	T	T	48973377	1	4	175	0	1	0	0	0	0	0	0	0	6678	841	29	4		4	GPKOW	23	48973377	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	75	48973377	106297183	1151	143186			3	113		5	5	163	C		5.987467e-11
GPKOW	27238	broad.mit.edu	37	chrX	48973405	48973405	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagatccaaggtgttcttgtCaaactcctgctgggagacag	12	9	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48973405	T	T	48973405	3	4	175	1	0	0	0	0	1	0	0	0	6678	826	29	4	562	4	GPKOW	23	48973405	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	28	48973405	106297155	1152	143187			3	113		5	5	163	C		5.987467e-11
GPKOW	27238	broad.mit.edu	37	chrX	48973451	48973451	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtagtactcactaacagtCaccacccggctccccacagc	7	17	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48973451	T	T	48973451	2	4	175	1	0	0	0	0	0	0	0	1	6678	813	29	4		4	GPKOW	23	48973451	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	46	48973451	106297109	1153	143188			3	113		5	5	163	C		5.987467e-11
MAGED1	9500	broad.mit.edu	37	chrX	51637834	51637834	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccttattctcaactccgcGatccgcctgccgtcctgagc	7	19	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51637834	T	T	51637834	1	4	175	0	1	0	0	0	0	0	0	0	9275	1058	37	3		3	MAGED1	23	51637834	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2664383	51637834	103632726	1154	143189											
HUWE1	10075	broad.mit.edu	37	chrX	53641577	53641577	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcctcctcatcctcacTagaggcttcttctgcggcat	6	16	5	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53641577	A	A	53641577	3	1	175	1	0	0	0	0	1	0	0	0	7531	1522	53	5	11193	5	HUWE1	23	53641577	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	2003743	53641577	101628983	1155	143190											
HUWE1	10075	broad.mit.edu	37	chrX	53657806	53657806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactataataggactcatagCaacaaagatgaatgaagttc	7	6	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53657806	A	A	53657806	1	1	175	0	1	0	0	0	0	0	0	0	7531	725	25	3		3	HUWE1	23	53657806	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	16229	53657806	101612754	1156	143191											
RRAGB	10325	broad.mit.edu	37	chrX	55745712	55745712	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcaatttctaagggaattgGatcatggaaactgttttttg	9	4	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55745712	A	A	55745712	1	1	175	0	1	0	0	0	0	0	0	0	13784	1189	41	4		4	RRAGB	23	55745712	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	2087906	55745712	99524848	1157	143192											
OPHN1	4983	broad.mit.edu	37	chrX	67283757	67283757	+	Frame_Shift_Del	DEL	G	-	-													atgtggaaagagggggtcttGgtgggcccagagcctggcat							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67283757	-	-	67283757	7	5	175	1	0	1	0	1	0	0	0	0	10969	1335	47	0	327	0	OPHN1	23	67283757	Frame_Shift_Del	DEL	G	TCGA-55-1592-01A-01D-0969-08	11538045	67283757	87986803	1158	143193											
KIAA2022	340533	broad.mit.edu	37	chrX	73964291	73964291	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagctgcaaatgacttcattGccacatcctggtcctctgag	9	12	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73964291	C	C	73964291	3	2	175	1	0	0	0	0	1	0	0	0	8339	1319	46	4	4457	4	KIAA2022	23	73964291	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	6680534	73964291	81306269	1159	143194											
LPAR4	2846	broad.mit.edu	37	chrX	78010954	78010954	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggcttctccaaacgtgtCtggaagacttatttatccaa	8	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78010954	A	A	78010954	2	1	175	1	0	0	0	0	0	0	0	1	8994	900	32	3		3	LPAR4	23	78010954	Silent	SNP	C	TCGA-55-1592-01A-01D-0969-08	4046663	78010954	77259606	1160	143195											
P2RY10	27334	broad.mit.edu	37	chrX	78216847	78216847	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaccatcattagcagttGtcccgttgtccgaatcgcac	9	12	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78216847	C	C	78216847	3	2	175	1	0	0	0	0	1	0	0	0	11441	1377	48	4	832	4	P2RY10	23	78216847	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	205893	78216847	77053713	1161	143196											
POU3F4	5456	broad.mit.edu	37	chrX	82763575	82763575	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccctggaccagcaggacgtGaagcccgggcgcgaagacct	14	15	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82763575	T	T	82763575	2	4	175	1	0	0	0	0	0	0	0	1	12373	1277	45	3		3	POU3F4	23	82763575	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	4546728	82763575	72506985	1162	143197											
DACH2	117154	broad.mit.edu	37	chrX	85403695	85403695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcccggggggcttattccGggccgaacccctgtactcga	13	15	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85403695	T	T	85403695	3	4	175	1	0	0	0	0	1	0	0	0	4254	1116	39	1	73	1	DACH2	23	85403695	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	2640120	85403695	69866865	1163	143198											
NXF5	55998	broad.mit.edu	37	chrX	101092342	101092342	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggagggagcagtgggggatCtggggaggggactctgcagt	23	5	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101092342	A	A	101092342	1	1	175	0	1	0	0	0	0	0	0	0	10881	928	32	3		3	NXF5	23	101092342	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	15688647	101092342	54178218	1164	143199											
CXorf57	55086	broad.mit.edu	37	chrX	105891406	105891406	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aattattagtgtatgttaatGtattattcaacaaacttaac	4	4	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105891406	C	C	105891406	1	2	175	0	1	0	0	0	0	0	0	0	4146	1392	48	4		4	CXorf57	23	105891406	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	4799064	105891406	49379154	1165	143200											
PLS3	5358	broad.mit.edu	37	chrX	114877597	114877597	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttttagtgtggcctttgAcaaagtcttccgattttgtt	8	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114877597	G	G	114877597	1	3	175	0	1	0	0	0	0	0	0	0	12203	290	10	5		5	PLS3	23	114877597	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	8986191	114877597	40392963	1166	143201											
KIAA1210	57481	broad.mit.edu	37	chrX	118238981	118238981	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtcaaactcttatgtgGtaaagccttcttttgtggat	9	8	3	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118238981	A	A	118238981	3	1	175	1	0	0	0	0	1	0	0	0	8284	1261	44	4	4119	4	KIAA1210	23	118238981	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	3361384	118238981	37031579	1167	143202											
ATP1B4	23439	broad.mit.edu	37	chrX	119504691	119504691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttcacggagcgggtaaaGcctcctggtgagtgtgccca	13	12	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119504691	T	T	119504691	3	4	175	1	0	0	0	0	1	0	0	0	1139	962	34	3	460	3	ATP1B4	23	119504691	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	1265710	119504691	35765869	1168	143203											
ATP1B4	23439	broad.mit.edu	37	chrX	119512496	119512496	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagactctagcccactctgtGacccagcaccccacatatac	5	18	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119512496	T	T	119512496	1	4	175	0	1	0	0	0	0	0	0	0	1139	1305	45	3		3	ATP1B4	23	119512496	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	7805	119512496	35758064	1169	143204											
CT47B1	643311	broad.mit.edu	37	chrX	120007954	120007954	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttataactagcagcggcattCagttactccaccctcaggag	8	12	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120007954	G	G	120007954	1	3	175	0	1	0	0	0	0	0	0	0	4023	841	29	4		4	CT47B1	23	120007954	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	495458	120007954	35262606	1170	143205											
ODZ1	10178	broad.mit.edu	37	chrX	123631060	123631060	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacccattatggttgatatGactgggggctgctgggaaat	13	6	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123631060	C	C	123631060	2	2	175	1	0	0	0	0	0	0	0	1	10929	1277	45	4		4	ODZ1	23	123631060	Silent	SNP	G	TCGA-55-1592-01A-01D-0969-08	3623106	123631060	31639500	1171	143206											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686243	125686243	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccacgaaaagcgtgttacActtggtgccgcacaccacct	8	15	0	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125686243	G	G	125686243	3	3	175	1	0	0	0	0	1	0	0	0	4297	159	6	5	1046	5	DCAF12L1	23	125686243	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	2055183	125686243	29584317	1172	143207											
OCRL	4952	broad.mit.edu	37	chrX	128694647	128694647	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtaaagaacacttctggaAtttccttttggctatatgtt	9	6	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128694647	T	T	128694647	1	4	175	0	1	0	0	0	0	0	0	0	10918	116	4	5		5	OCRL	23	128694647	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	3008404	128694647	26575913	1173	143208											
ARHGAP36	158763	broad.mit.edu	37	chrX	130218448	130218448	+	Intron	DEL	G	-	-													aggagggatgttctggaaatGgggggagaaaagaggccgag							TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130218448	-	-	130218448	6	5	175	0	1	1	0	1	0	0	0	0	885	1363	47	0		0	ARHGAP36	23	130218448	Intron	DEL	G	TCGA-55-1592-01A-01D-0969-08	1523801	130218448	25052112	1174	143209											
ARHGAP36	158763	broad.mit.edu	37	chrX	130218650	130218650	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatactccgtgcagcgagtgCgtcaggtaaattggctatgt	12	8	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130218650	T	T	130218650	3	4	175	1	0	0	0	0	1	0	0	0	885	768	27	4	817	4	ARHGAP36	23	130218650	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	202	130218650	25051910	1175	143210											
ARHGEF6	9459	broad.mit.edu	37	chrX	135829672	135829672	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaagcccggcttaccttctGttgctttgttgacagctaaa	8	11	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135829672	A	A	135829672	3	1	175	1	0	0	0	0	1	0	0	0	912	1377	48	4	2081	4	ARHGEF6	23	135829672	Missense_Mutation	SNP	G	TCGA-55-1592-01A-01D-0969-08	5611022	135829672	19440888	1176	143211											
MAGEC3	139081	broad.mit.edu	37	chrX	140984475	140984475	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accttccacgcctcagctttGaggaagacttccagaacccg	8	15	1	3			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140984475	T	T	140984475	1	4	175	0	1	0	0	0	0	0	0	0	9274	1291	45	3		3	MAGEC3	23	140984475	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	5154803	140984475	14286085	1177	143212											
SPANXN2	494119	broad.mit.edu	37	chrX	142795241	142795241	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcgtcctcctgtgaagatCcttcagatgagtccaggtct	9	12	2	4			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142795241	T	T	142795241	3	4	175	1	0	0	0	0	1	0	0	0	15107	855	30	4	109	4	SPANXN2	23	142795241	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1810766	142795241	12475319	1178	143213											
SLITRK2	84631	broad.mit.edu	37	chrX	144906014	144906014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacaactatatccccccaCctgtgggtcagatgtgccaa	7	14	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144906014	A	A	144906014	3	1	175	1	0	0	0	0	1	0	0	0	14857	507	18	3	2073	3	SLITRK2	23	144906014	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	2110773	144906014	10364546	1179	143214											
MTMR1	8776	broad.mit.edu	37	chrX	149919611	149919611	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctccgctgcaccaactccAaaaccgtgggattctgcttt	8	14	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149919611	G	G	149919611	1	3	175	0	1	0	0	0	0	0	0	0	10032	145	5	5		5	MTMR1	23	149919611	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	5013597	149919611	5350949	1180	143215											
CNGA2	1260	broad.mit.edu	37	chrX	150912021	150912021	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accccctgtaaaggatgaggAgtacctatttgtcatctttg	9	9	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150912021	G	G	150912021	3	3	175	1	0	0	0	0	1	0	0	0	3629	304	11	5	1068	5	CNGA2	23	150912021	Missense_Mutation	SNP	A	TCGA-55-1592-01A-01D-0969-08	992410	150912021	4358539	1181	143216											
GABRA3	2556	broad.mit.edu	37	chrX	151533027	151533027	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatgtaacagtgacttgTttgtgtgattatcatcttct	9	6	4	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151533027	A	A	151533027	3	1	175	1	0	0	0	0	1	0	0	0	6222	1725	60	5	1498	5	GABRA3	23	151533027	Missense_Mutation	SNP	T	TCGA-55-1592-01A-01D-0969-08	621006	151533027	3737533	1182	143217											
PNCK	139728	broad.mit.edu	37	chrX	152936990	152936990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcccagcaagcctcaggGtgtcgtccctcacccacata	7	18	2	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152936990	T	T	152936990	1	4	175	0	1	0	0	0	0	0	0	0	12240	1276	44	3		3	PNCK	23	152936990	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	1403963	152936990	2333570	1183	143218											
PNCK	139728	broad.mit.edu	37	chrX	152938064	152938064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccagggcctccttgcCccggagggccttcttgggga	13	16	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152938064	A	A	152938064	3	1	175	1	0	0	0	0	1	0	0	0	12240	623	22	2	910	2	PNCK	23	152938064	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	1074	152938064	2332496	1184	143219											
L1CAM	3897	broad.mit.edu	37	chrX	153134081	153134081	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcagccaggcagaagtagCgtccggtgtcattggcctgg	16	10	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153134081	T	T	153134081	3	4	175	1	0	0	0	0	1	0	0	0	8660	768	27	4	2360	4	L1CAM	23	153134081	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08	196017	153134081	2136479	1185	143220											
IRAK1	3654	broad.mit.edu	37	chrX	153281730	153281730	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaacacacagttaggtgcaGggtgaggaggagggcctcgg	17	8	0	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153281730	A	A	153281730	1	1	175	0	1	0	0	0	0	0	0	0	7891	1015	35	4		4	IRAK1	23	153281730	Intron	SNP	G	TCGA-55-1592-01A-01D-0969-08	147649	153281730	1988830	1186	143221											
GAB3	139716	broad.mit.edu	37	chrX	153944168	153944168	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtattgtatttggtaggaAcagttctgatataaattagc	9	4	1	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153944168	G	G	153944168	1	3	175	0	1	0	0	0	0	0	0	0	6210	58	2	5		5	GAB3	23	153944168	Intron	SNP	A	TCGA-55-1592-01A-01D-0969-08	662438	153944168	1326392	1187	143222											
PCDH11Y	83259	broad.mit.edu	37	chrY	4925273	4925273	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggtatcccaagggatgagCattgcttttatgaagtggag	13	6	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4925273	G	G	4925273	3	3	175	1	0	0	0	0	1	0	0	0	11603	710	25	4	447	4	PCDH11Y	24	4925273	Missense_Mutation	SNP	C	TCGA-55-1592-01A-01D-0969-08		4925273	54448293	1188	143223											
PCDH11Y	83259	broad.mit.edu	37	chrY	5442102	5442102	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagtccagtccttggagatCgacctggactccatgagaaa	10	11	0	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5442102	A	A	5442102	1	1	175	0	1	0	0	0	0	0	0	0	11603	899	31	3		3	PCDH11Y	24	5442102	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	516829	5442102	53931464	1189	143224											
PCDH11Y	83259	broad.mit.edu	37	chrY	5605984	5605984	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaacacatcccttgtaaAgctaaaatagttacttcaaa	5	8	1	0			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5605984	T	T	5605984	1	4	175	0	1	0	0	0	0	0	0	0	11603	87	3	5		5	PCDH11Y	24	5605984	3'UTR	SNP	A	TCGA-55-1592-01A-01D-0969-08	163882	5605984	53767582	1190	143225											
TSPY2	64591	broad.mit.edu	37	chrY	6115581	6115581	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccgaaaacctatctaagcTttctccaccttgtcctgaca	4	15	2	1			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6115581	A	A	6115581	1	1	175	0	1	0	0	0	0	0	0	0	16783	1624	56	5		5	TSPY2	24	6115581	Intron	SNP	T	TCGA-55-1592-01A-01D-0969-08	509597	6115581	53257985	1191	143226											
TSPY1	7258	broad.mit.edu	37	chrY	9305870	9305870	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagagtgagcacctcaccCgaaaacctatctaagctttc	7	13	2	2			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9305870	T	T	9305870	1	4	175	0	1	0	0	0	0	0	0	0	16782	667	23	4		4	TSPY1	24	9305870	Intron	SNP	C	TCGA-55-1592-01A-01D-0969-08	3190289	9305870	50067696	1192	143227											
KIAA1751	85452	broad.mit.edu	37	chr1	1920356	1920356	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccgggtccacgtcatcctCagcttcctgtagaagacatt	8	14	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1920356	T	T	1920356	3	4	176	1	0	0	0	0	1	0	0	0	8326	835	29	4	2228	4	KIAA1751	1	1920356	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01		1920356	247330265	1	143228											
CCDC27	148870	broad.mit.edu	37	chr1	3678010	3678010	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggtgagccagccccagCggggcacagcgcagagctct	17	13	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3678010	T	T	3678010	1	4	176	0	1	0	0	0	0	0	0	0	2828	783	27	4		4	CCDC27	1	3678010	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1757654	3678010	245572611	2	143229											
KCNAB2	8514	broad.mit.edu	37	chr1	6150575	6150575	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccaccggttaggcctgggcGgggtctgaagggtctgaacc	17	11	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	6150575	C	C	6150575	1	2	176	0	1	0	0	0	0	0	0	0	8080	1131	39	4		4	KCNAB2	1	6150575	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	2472565	6150575	243100046	3	143230											
PGD	5226	broad.mit.edu	37	chr1	10459252	10459252	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctttgggggtcgagatctCcctcgttctctccgacgcct	10	15	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10459252	T	T	10459252	1	4	176	0	1	0	0	0	0	0	0	0	11882	870	30	4		4	PGD	1	10459252	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	4308677	10459252	238791369	4	143231											
C1orf127	148345	broad.mit.edu	37	chr1	11013907	11013907	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatactgttgttcttctgcCagttccagccagtatgtctg	9	10	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11013907	T	T	11013907	1	4	176	0	1	0	0	0	0	0	0	0	2014	609	21	4		4	C1orf127	1	11013907	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	554655	11013907	238236714	5	143232											
MTOR	2475	broad.mit.edu	37	chr1	11273754	11273754	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagatcaactcctcactcCcctcctcccactgggccctt	5	21	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11273754	T	T	11273754	1	4	176	0	1	0	0	0	0	0	0	0	10048	638	22	4		4	MTOR	1	11273754	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	259847	11273754	237976867	6	143233											
CLCN6	1185	broad.mit.edu	37	chr1	11884531	11884531	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgttggtctttcctttttCaccctgcccagggctcttcg	8	14	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11884531	T	T	11884531	1	4	176	0	1	0	0	0	0	0	0	0	3498	841	29	4		4	CLCN6	1	11884531	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	610777	11884531	237366090	7	143234											
ID3	3399	broad.mit.edu	37	chr1	23885762	23885762	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggactccgggtaccagttcCcgcaggcgggagtagcagtg	17	11	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	23885762	T	T	23885762	2	4	176	1	0	0	0	0	0	0	0	1	7561	610	22	4		4	ID3	1	23885762	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	12001231	23885762	225364859	8	143235											
MYOM3	127294	broad.mit.edu	37	chr1	24426112	24426112	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagggtttgggatcctgctCtggcctcggcggtggcaggg	19	9	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	24426112	G	G	24426112	1	3	176	0	1	0	0	0	0	0	0	0	10187	928	32	4		4	MYOM3	1	24426112	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	540350	24426112	224824509	9	143236											
MYOM3	127294	broad.mit.edu	37	chr1	24426161	24426161	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataggtctctccaggtctcCagtctcacctcctaatctcc	5	17	4	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	24426161	T	T	24426161	1	4	176	0	1	0	0	0	0	0	0	0	10187	609	21	4		4	MYOM3	1	24426161	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	49	24426161	224824460	10	143237											
LCK	3932	broad.mit.edu	37	chr1	32745899	32745899	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccagtctcagaatctgaAactttgtagctgcatctcct	6	11	3	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	32745899	C	C	32745899	1	2	176	0	1	0	0	0	0	0	0	0	8748	29	1	5		5	LCK	1	32745899	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	8319738	32745899	216504722	11	143238											
TSSK3	81629	broad.mit.edu	37	chr1	32829545	32829545	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaagtcacaccgggagctGagccagaccttctgcggcag	12	15	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	32829545	C	C	32829545	2	2	176	1	0	0	0	0	0	0	0	1	16795	1277	45	4		4	TSSK3	1	32829545	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	83646	32829545	216421076	12	143239											
S100PBP	64766	broad.mit.edu	37	chr1	33321432	33321432	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatttccaaaagtaaagatCttcttaaaattgttgtgctg	7	5	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	33321432	T	T	33321432	1	4	176	0	1	0	0	0	0	0	0	0	13902	928	32	4		4	S100PBP	1	33321432	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	491887	33321432	215929189	13	143240											
C1orf94	84970	broad.mit.edu	37	chr1	34684221	34684221	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accataaaattaatatatatAtttttctaattctctccgat	1	7	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	34684221	G	G	34684221	1	3	176	0	1	0	0	0	0	0	0	0	2093	464	16	5		5	C1orf94	1	34684221	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	1362789	34684221	214566400	14	143241											
IPP	3652	broad.mit.edu	37	chr1	46182455	46182455	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacttctatgctgctagtatCagtcattcaatactaacaga	5	9	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46182455	T	T	46182455	1	4	176	0	1	0	0	0	0	0	0	0	7870	841	29	4		4	IPP	1	46182455	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	11498234	46182455	203068166	15	143242											
PIK3R3	8503	broad.mit.edu	37	chr1	46511639	46511639	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctactctcacgaattaagaAtgcaccatcaggtttcccat	6	12	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	46511639	G	G	46511639	3	3	176	1	0	0	0	0	1	0	0	0	12015	101	4	5	255	5	PIK3R3	1	46511639	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	329184	46511639	202738982	16	143243											
CMPK1	51727	broad.mit.edu	37	chr1	47840725	47840725	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttggtacaggaataaaaGagtcacatttaaacatgtaa	7	4	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	47840725	A	A	47840725	1	1	176	0	1	0	0	0	0	0	0	0	3612	957	33	4		4	CMPK1	1	47840725	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	1329086	47840725	201409896	17	143244											
AGBL4	84871	broad.mit.edu	37	chr1	50307597	50307597	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctccacagacccagtgaGaatctcggcctcctcgagcg	10	15	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	50307597	T	T	50307597	1	4	176	0	1	0	0	0	0	0	0	0	377	957	33	3		3	AGBL4	1	50307597	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	2466872	50307597	198943024	18	143245											
C1orf175	374977	broad.mit.edu	37	chr1	55175634	55175634	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgcagctctggataacttgaGacatgacccagaagcatcag	10	11	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55175634	A	A	55175634	3	1	176	1	0	0	0	0	1	0	0	0	2036	942	33	4	3832	4	C1orf175	1	55175634	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	4868037	55175634	194074987	19	143246											
C1orf168	199920	broad.mit.edu	37	chr1	57219538	57219538	+	Frame_Shift_Del	DEL	C	-	-													aacatggtttgaatatggttCcttttctgtgtttttaggtt							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	57219538	-	-	57219538	7	5	176	1	0	1	0	1	0	0	0	0	2032	864	30	0	1037	0	C1orf168	1	57219538	Frame_Shift_Del	DEL	C	TCGA-55-1594-01A-01D-1040-01	2043904	57219538	192031083	20	143247											
SFRS11	9295	broad.mit.edu	37	chr1	70687463	70687463	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgagcgctagctctgagcaGatgcggactctcttcggttt	12	12	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	70687463	C	C	70687463	3	2	176	1	0	0	0	0	1	0	0	0	14279	933	33	4	146	4	SFRS11	1	70687463	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	13467925	70687463	178563158	21	143248											
LRRIQ3	127255	broad.mit.edu	37	chr1	74621379	74621379	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttatttcttcaccttctTatttcaatattcaaatggta	2	8	5	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	74621379	G	G	74621379	1	3	176	0	1	0	0	0	0	0	0	0	9117	1769	61	5		5	LRRIQ3	1	74621379	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	3933916	74621379	174629242	22	143249											
LHX8	431707	broad.mit.edu	37	chr1	75608822	75608822	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtatggaactcgctgcTctcgatgtgggagacacatc	13	9	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	75608822	G	G	75608822	3	3	176	1	0	0	0	0	1	0	0	0	8848	1551	54	5	427	5	LHX8	1	75608822	Missense_Mutation	SNP	T	TCGA-55-1594-01A-01D-1040-01	987443	75608822	173641799	23	143250											
LPHN2	23266	broad.mit.edu	37	chr1	82061874	82061874	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttccactttaactcctgGctcaatactgaagtcatctg	6	12	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	82061874	A	A	82061874	1	1	176	0	1	0	0	0	0	0	0	0	9003	1218	42	4		4	LPHN2	1	82061874	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	6453052	82061874	167188747	24	143251											
CLCA4	22802	broad.mit.edu	37	chr1	87045236	87045236	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gataagattattcttacatgGacagcaccaggagataattt	8	6	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	87045236	C	C	87045236	3	2	176	1	0	0	0	0	1	0	0	0	3490	1183	41	4	2372	4	CLCA4	1	87045236	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	4983362	87045236	162205385	25	143252											
GBP5	115362	broad.mit.edu	37	chr1	89734359	89734359	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataaacctaaaatctcccTgtgaaaagacagttcagaga	6	8	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	89734359	A	A	89734359	1	1	176	0	1	0	0	0	0	0	0	0	6339	1595	55	5		5	GBP5	1	89734359	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	2689123	89734359	159516262	26	143253											
COL11A1	1301	broad.mit.edu	37	chr1	103364245	103364245	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaccagggatgccccgaaGaccttctggaccaggctttc	12	13	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	103364245	A	A	103364245	3	1	176	1	0	0	0	0	1	0	0	0	3699	942	33	4	1243	4	COL11A1	1	103364245	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	13629886	103364245	145886376	27	143254											
COL11A1	1301	broad.mit.edu	37	chr1	103491969	103491969	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaaccatcttaactttTacatagtgtaaatgttaaga	7	5	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	103491969	C	C	103491969	1	2	176	0	1	0	0	0	0	0	0	0	3699	1769	61	5		5	COL11A1	1	103491969	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	127724	103491969	145758652	28	143255											
MAN1A2	10905	broad.mit.edu	37	chr1	117944871	117944871	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaggccttggaagaagcAaaagaaaaattaagaaagtc	11	4	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	117944871	C	C	117944871	2	2	176	1	0	0	0	0	0	0	0	1	9303	117	5	5		5	MAN1A2	1	117944871	Silent	SNP	A	TCGA-55-1594-01A-01D-1040-01	14452902	117944871	131305750	29	143256											
PRUNE	58497	broad.mit.edu	37	chr1	150998175	150998175	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttagctgacttttctGcctcccagataagaaaacag	7	9	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	150998175	A	A	150998175	1	1	176	0	1	0	0	0	0	0	0	0	12746	1334	46	4		4	PRUNE	1	150998175	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	33053304	150998175	98252446	30	143257											
KPRP	448834	broad.mit.edu	37	chr1	152733114	152733114	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgttgagattcctcccatCagacgccgctcccagagctg	9	16	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	152733114	G	G	152733114	3	3	176	1	0	0	0	0	1	0	0	0	8507	816	29	4	1052	4	KPRP	1	152733114	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1734939	152733114	96517507	31	143258											
DCST1	149095	broad.mit.edu	37	chr1	155015885	155015885	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgggagcgcgtgagcaccGaggtgcgggactacgtgtac	18	10	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	155015885	A	A	155015885	3	1	176	1	0	0	0	0	1	0	0	0	4335	1059	37	4	1106	4	DCST1	1	155015885	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	2282771	155015885	94234736	32	143259											
SEMA4A	64218	broad.mit.edu	37	chr1	156128696	156128696	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggaatattacagagttttCcaaaaggcaggggaaactgg	12	5	0	1	rs148736973	by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	156128696	T	T	156128696	1	4	176	0	1	0	0	0	0	0	0	0	14144	870	30	4		4	SEMA4A	1	156128696	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1112811	156128696	93121925	33	143260											
FCRL2	79368	broad.mit.edu	37	chr1	157718500	157718500	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctggcttaatgattatatCcttcctctcaaccccaacat	3	15	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	157718500	T	T	157718500	1	4	176	0	1	0	0	0	0	0	0	0	5852	870	30	4		4	FCRL2	1	157718500	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1589804	157718500	91532121	34	143261											
SPTA1	6708	broad.mit.edu	37	chr1	158632848	158632848	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagttcccatatgcattgtGttctgatctctaattaaatc	5	9	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	158632848	A	A	158632848	1	1	176	0	1	0	0	0	0	0	0	0	15234	1392	48	4		4	SPTA1	1	158632848	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	914348	158632848	90617773	35	143262											
PIGM	93183	broad.mit.edu	37	chr1	160001137	160001137	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataggcagggggttaagaagCcaaaagacacagtagccaca	12	8	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	160001137	G	G	160001137	3	3	176	1	0	0	0	0	1	0	0	0	11987	740	26	4	882	4	PIGM	1	160001137	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1368289	160001137	89249484	36	143263											
FMO3	2328	broad.mit.edu	37	chr1	171083381	171083381	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgagatcattttatttaaAggagtatttcctcctctact	5	7	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	171083381	C	C	171083381	3	2	176	1	0	0	0	0	1	0	0	0	6014	69	3	5	1084	5	FMO3	1	171083381	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	11082244	171083381	78167240	37	143264											
TNN	63923	broad.mit.edu	37	chr1	175049473	175049473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagctatgagattcttgGtttgctgcctggaaccaagt	11	9	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	175049473	T	T	175049473	3	4	176	1	0	0	0	0	1	0	0	0	16446	1261	44	3	969	3	TNN	1	175049473	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	3966092	175049473	74201148	38	143265											
RASAL2	9462	broad.mit.edu	37	chr1	178310650	178310650	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggaaagcgagcacaggCgagtacagtatacaaagtgt	13	7	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	178310650	A	A	178310650	1	1	176	0	1	0	0	0	0	0	0	0	13172	783	27	3		3	RASAL2	1	178310650	5'UTR	SNP	C	TCGA-55-1594-01A-01D-1040-01	3261177	178310650	70939971	39	143266											
KCNT2	343450	broad.mit.edu	37	chr1	196303207	196303207	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacctaaaacaataaaacaTgaaaatttatcaaggcgttt	5	6	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	196303207	A	A	196303207	1	1	176	0	1	0	0	0	0	0	0	0	8162	1479	51	5		5	KCNT2	1	196303207	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	17992557	196303207	52947414	40	143267											
PPFIA4	8497	broad.mit.edu	37	chr1	203030093	203030093	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctaggtttcctctctgccTgcagtcttctgggaatgtct	10	11	4	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	203030093	A	A	203030093	1	1	176	0	1	0	0	0	0	0	0	0	12408	1595	55	5		5	PPFIA4	1	203030093	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	6726886	203030093	46220528	41	143268											
REN	5972	broad.mit.edu	37	chr1	204126309	204126309	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggggaccctggggaggctAttgggtatggggtgggcagg	23	5	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	204126309	G	G	204126309	1	3	176	0	1	0	0	0	0	0	0	0	13332	464	16	5		5	REN	1	204126309	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	1096216	204126309	45124312	42	143269											
NFASC	23114	broad.mit.edu	37	chr1	204948557	204948557	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaccattccaagtacccCggcagcgttaactcagccgt	8	15	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	204948557	A	A	204948557	2	1	176	1	0	0	0	0	0	0	0	1	10454	639	23	1		1	NFASC	1	204948557	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	822248	204948557	44302064	43	143270											
GUK1	2987	broad.mit.edu	37	chr1	228334439	228334440	+	Intron	DNP	GG	TT	TT													atctgactaaagcagtcgtgGgtgtgggaggggcctgcagg							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	228334440	TT	TT	228334439	1	4	176	0	1	0	0	0	0	0	0	0	6965	1247	43	2		2	GUK1	1	228334439	Intron	DNP	GG	TCGA-55-1594-01A-01D-1040-01	23385882	228334439	20916182	44	143271											
OBSCN	84033	broad.mit.edu	37	chr1	228547306	228547306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctcccccagagaagagaCcatcaccactgtggtgaaga	9	14	1	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	228547306	A	A	228547306	1	1	176	0	1	0	0	0	0	0	0	0	10907	507	18	3		3	OBSCN	1	228547306	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	212867	228547306	20703315	45	143272											
RHOU	58480	broad.mit.edu	37	chr1	228873641	228873641	+	Intron	DEL	T	-	-													gagggtgggcaggggccaggTtattggccggcaggaagcag					rs35672194		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	228873641	-	-	228873641	6	5	176	0	1	1	0	1	0	0	0	0	13454	1740	60	0		0	RHOU	1	228873641	Intron	DEL	T	TCGA-55-1594-01A-01D-1040-01	326335	228873641	20376980	46	143273											
GNPAT	8443	broad.mit.edu	37	chr1	231406870	231406870	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagagcaggcctatcactGagaaaaagttagctttgttc	10	7	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	231406870	A	A	231406870	1	1	176	0	1	0	0	0	0	0	0	0	6605	1305	45	4		4	GNPAT	1	231406870	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	2533229	231406870	17843751	47	143274											
ARID4B	51742	broad.mit.edu	37	chr1	235359312	235359312	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaggaaaacttctttttaaGagctaatagtgtgtagtaaa	10	3	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	235359312	C	C	235359312	1	2	176	0	1	0	0	0	0	0	0	0	922	957	33	4		4	ARID4B	1	235359312	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	3952442	235359312	13891309	48	143275											
RYR2	6262	broad.mit.edu	37	chr1	237995884	237995884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagatgtatcaagaaagGtgttgggaatttttcccagc	12	5	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	237995884	T	T	237995884	3	4	176	1	0	0	0	0	1	0	0	0	13880	1252	44	3	15259	3	RYR2	1	237995884	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	2636572	237995884	11254737	49	143276											
OR2C3	81472	broad.mit.edu	37	chr1	247694783	247694783	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaacgacatcccaagtGccctgtcttccaaggtcact	7	13	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	247694783	A	A	247694783	1	1	176	0	1	0	0	0	0	0	0	0	11087	1334	46	4		4	OR2C3	1	247694783	3'UTR	SNP	G	TCGA-55-1594-01A-01D-1040-01	9698899	247694783	1555838	50	143277											
WDR35	57539	broad.mit.edu	37	chr2	20182143	20182143	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaccattatttaaaatgtTgacatttctgcattaagtag	5	5	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20182143	A	A	20182143	1	1	176	0	1	0	0	0	0	0	0	0	17416	1827	63	5		5	WDR35	2	20182143	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01		20182143	223017230	51	143278											
HEATR5B	54497	broad.mit.edu	37	chr2	37284394	37284394	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acactattttctttttaagtGacaatgtgtaataggaccat	6	6	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	37284394	C	C	37284394	1	2	176	0	1	0	0	0	0	0	0	0	7099	1305	45	4		4	HEATR5B	2	37284394	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	17102251	37284394	205914979	52	143279											
MSH2	4436	broad.mit.edu	37	chr2	47709956	47709956	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggagttcctgtccaaggtGaaacaaatgccctttactga	9	10	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	47709956	C	C	47709956	2	2	176	1	0	0	0	0	0	0	0	1	9964	1277	45	4		4	MSH2	2	47709956	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	10425562	47709956	195489417	53	143280											
FSHR	2492	broad.mit.edu	37	chr2	49217718	49217718	+	Frame_Shift_Del	DEL	G	-	-													aacttacagtaaaactttttGgagagaatgaatcttgtgaa							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	49217718	-	-	49217718	7	5	176	1	0	1	0	1	0	0	0	0	6133	1357	47	0	1678	0	FSHR	2	49217718	Frame_Shift_Del	DEL	G	TCGA-55-1594-01A-01D-1040-01	1507762	49217718	193981655	54	143281											
EFEMP1	2202	broad.mit.edu	37	chr2	56102263	56102263	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcaccactactttggatAtatatatatatataaattat	4	5	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	56102263	T	T	56102263	1	4	176	0	1	0	0	0	0	0	0	0	4981	464	16	5		5	EFEMP1	2	56102263	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	6884545	56102263	187097110	55	143282											
ZNF638	27332	broad.mit.edu	37	chr2	71631126	71631126	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaacatgaatataaaagatGaggtaaatcagaccaccatt	6	6	1	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71631126	A	A	71631126	3	1	176	1	0	0	0	0	1	0	0	0	18182	1291	45	4	3018	4	ZNF638	2	71631126	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	15528863	71631126	171568247	56	143283											
POLR1A	25885	broad.mit.edu	37	chr2	86305044	86305044	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagatgactgagcgcgcagCgtagtccactcgctttccca	11	14	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	86305044	T	T	86305044	3	4	176	1	0	0	0	0	1	0	0	0	12304	768	27	4	3940	4	POLR1A	2	86305044	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	14673918	86305044	156894329	57	143284											
EIF5B	9669	broad.mit.edu	37	chr2	99993096	99993102	+	Splice_Site	DEL	TGAGGTA	-	-													gacaaagcaaaacggaggatTgaggtatttattttaccgtt							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	99993102	-	-	99993096	8	5	176	1	0	1	0	1	0	0	1	0	5086	1800	63	0	1877	0	EIF5B	2	99993096	Splice_Site	DEL	TGAGGTA	TCGA-55-1594-01A-01D-1040-01	13688052	99993096	143206277	58	143285											
SLC5A7	60482	broad.mit.edu	37	chr2	108626979	108626979	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accctggctattaccctgatGataatggtatatataatcag	7	8	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108626979	A	A	108626979	3	1	176	1	0	0	0	0	1	0	0	0	14784	1290	45	4	1435	4	SLC5A7	2	108626979	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	8633883	108626979	134572394	59	143286											
MERTK	10461	broad.mit.edu	37	chr2	112766150	112766150	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgtagataagtttacacttCgtataaccccaacataactt	5	9	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	112766150	T	T	112766150	1	4	176	0	1	0	0	0	0	0	0	0	9572	899	31	4		4	MERTK	2	112766150	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	4139171	112766150	130433223	60	143287											
MARCO	8685	broad.mit.edu	37	chr2	119735488	119735488	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaactggaactaagggagAgaaaggagacctgggtctcc	15	7	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	119735488	T	T	119735488	3	4	176	1	0	0	0	0	1	0	0	0	9403	304	11	5	773	5	MARCO	2	119735488	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	6969338	119735488	123463885	61	143288											
MYO7B	4648	broad.mit.edu	37	chr2	128366435	128366435	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgggggccaggagggccaGgcctcgccgcactttgaggt	17	11	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	128366435	A	A	128366435	2	1	176	1	0	0	0	0	0	0	0	1	10177	991	35	4		4	MYO7B	2	128366435	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	8630947	128366435	114832938	62	143289											
WDR33	55339	broad.mit.edu	37	chr2	128482333	128482333	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagctggatttacagaactGaaaactgcaagcagtctctg	9	9	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	128482333	A	A	128482333	1	1	176	0	1	0	0	0	0	0	0	0	17414	1305	45	4		4	WDR33	2	128482333	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	115898	128482333	114717040	63	143290											
NEB	4703	broad.mit.edu	37	chr2	152496708	152496708	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtatcacacaatattcctCtttggtctgaagggttaaag	9	7	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	152496708	G	G	152496708	1	3	176	0	1	0	0	0	0	0	0	0	10397	928	32	4		4	NEB	2	152496708	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	24014375	152496708	90702665	64	143291											
FMNL2	114793	broad.mit.edu	37	chr2	153485166	153485166	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaagactccttcccagaacTttctaaattgcatttttatt	3	9	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	153485166	A	A	153485166	1	1	176	0	1	0	0	0	0	0	0	0	6010	1624	56	5		5	FMNL2	2	153485166	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	988458	153485166	89714207	65	143292											
KCNH7	90134	broad.mit.edu	37	chr2	163253285	163253285	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttaggttgaaagtcaactCtaggtttgttagaaagtgat	10	5	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	163253285	G	G	163253285	3	3	176	1	0	0	0	0	1	0	0	0	8107	922	32	4	1036	4	KCNH7	2	163253285	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	9768119	163253285	79946088	66	143293											
TTN	7273	broad.mit.edu	37	chr2	179643948	179643948	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagctatgataaatgtttaTattttacctttggtaatgga	9	3	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	179643948	C	C	179643948	1	2	176	0	1	0	0	0	0	0	0	0	16861	1421	49	5		5	TTN	2	179643948	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	16390663	179643948	63555425	67	143294											
ZNF804A	91752	broad.mit.edu	37	chr2	185800483	185800483	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcaaaagtgtgctatttAacacatgcttctgtttctct	5	9	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	185800483	G	G	185800483	1	3	176	0	1	0	0	0	0	0	0	0	18299	377	13	5		5	ZNF804A	2	185800483	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	6156535	185800483	57398890	68	143295											
COL5A2	1290	broad.mit.edu	37	chr2	189912863	189912863	+	Intron	DEL	T	-	-													actatcaggaaaaatgacagTttttagtgtaaattaaaaag							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	189912863	-	-	189912863	6	5	176	0	1	1	0	1	0	0	0	0	3729	1740	60	0		0	COL5A2	2	189912863	Intron	DEL	T	TCGA-55-1594-01A-01D-1040-01	4112380	189912863	53286510	69	143296											
WDR75	84128	broad.mit.edu	37	chr2	190334005	190334005	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctcttcctaagaataagaGaagttttttaaagcttttgg	7	6	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	190334005	C	C	190334005	1	2	176	0	1	0	0	0	0	0	0	0	17452	957	33	4		4	WDR75	2	190334005	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	421142	190334005	52865368	70	143297											
AOX1	316	broad.mit.edu	37	chr2	201469469	201469469	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtgtttggcagtgagagAatgatgtggttttcccccgt	15	6	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	201469469	G	G	201469469	2	3	176	1	0	0	0	0	0	0	0	1	731	243	9	5		5	AOX1	2	201469469	Silent	SNP	A	TCGA-55-1594-01A-01D-1040-01	11135464	201469469	41729904	71	143298											
CLK1	1195	broad.mit.edu	37	chr2	201719419	201719419	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctccttactatcgtgtgtCtagaaataaaataaaaacag	6	7	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	201719419	A	A	201719419	5	1	176	1	0	0	0	0	0	0	1	0	3568	927	32	3	326	3	CLK1	2	201719419	Splice_Site	SNP	C	TCGA-55-1594-01A-01D-1040-01	249950	201719419	41479954	72	143299											
CPS1	1373	broad.mit.edu	37	chr2	211518856	211518856	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttattctcatctccttcattCctgccttctcatcatttttt	1	13	5	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	211518856	A	A	211518856	1	1	176	0	1	0	0	0	0	0	0	0	3855	870	30	3		3	CPS1	2	211518856	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	9799437	211518856	31680517	73	143300											
ERBB4	2066	broad.mit.edu	37	chr2	212589971	212589971	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctgccaccaggagaaacTcataagctgagttctggagt	11	9	3	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	212589971	G	G	212589971	1	3	176	0	1	0	0	0	0	0	0	0	5251	1566	54	5		5	ERBB4	2	212589971	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	1071115	212589971	30609402	74	143301											
ATIC	471	broad.mit.edu	37	chr2	216214388	216214388	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaccactgattttaccacAcactgttttttggcttgctt	5	12	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	216214388	T	T	216214388	1	4	176	0	1	0	0	0	0	0	0	0	1109	174	6	5		5	ATIC	2	216214388	3'UTR	SNP	A	TCGA-55-1594-01A-01D-1040-01	3624417	216214388	26984985	75	143302											
FN1	2335	broad.mit.edu	37	chr2	216236618	216236618	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccccatgagaagtgaagaGaacaattaattacctgtaag	9	7	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	216236618	C	C	216236618	1	2	176	0	1	0	0	0	0	0	0	0	6020	957	33	4		4	FN1	2	216236618	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	22230	216236618	26962755	76	143303											
CCDC108	255101	broad.mit.edu	37	chr2	219869208	219869208	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagaaggagaaggcccttGctgaggggccctgaagcccc	17	11	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	219869208	C	C	219869208	1	2	176	0	1	0	0	0	0	0	0	0	2769	1334	46	4		4	CCDC108	2	219869208	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	3632590	219869208	23330165	77	143304											
SP110	3431	broad.mit.edu	37	chr2	231033728	231033728	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaagtgtctgggtttgGgtcctgagggcagccaatta	14	7	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	231033728	A	A	231033728	1	1	176	0	1	0	0	0	0	0	0	0	15075	1247	43	4		4	SP110	2	231033728	3'UTR	SNP	G	TCGA-55-1594-01A-01D-1040-01	11164520	231033728	12165645	78	143305											
AQP12B	653437	broad.mit.edu	37	chr2	241621963	241621963	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatgaggaactcctgcaGggacacggtggggttggccg	18	10	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	241621963	T	T	241621963	3	4	176	1	0	0	0	0	1	0	0	0	827	991	35	2	643	2	AQP12B	2	241621963	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	10588235	241621963	1577410	79	143306											
CIDEC	63924	broad.mit.edu	37	chr3	9940471	9940471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtcagcagcactcacagGcttcctgccagctctggaag	10	14	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	9940471	T	T	9940471	1	4	176	0	1	0	0	0	0	0	0	0	3458	1218	42	3		3	CIDEC	3	9940471	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01		9940471	188081959	80	143307											
GADL1	339896	broad.mit.edu	37	chr3	30769763	30769763	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttacccagtaagtctatctCatccaggaggaagtccatgt	8	10	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30769763	T	T	30769763	3	4	176	1	0	0	0	0	1	0	0	0	6245	835	29	4	32	4	GADL1	3	30769763	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	20829292	30769763	167252667	81	143308											
ZNF445	353274	broad.mit.edu	37	chr3	44541963	44541963	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcccttcttcatttgaGggttgtccttctaactcttt	6	12	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44541963	A	A	44541963	1	1	176	0	1	0	0	0	0	0	0	0	18045	1015	35	4		4	ZNF445	3	44541963	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	13772200	44541963	153480467	82	143309											
MANF	7873	broad.mit.edu	37	chr3	51425216	51425216	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagccaccaaaatcatcaatGaggtatcaaagcctctggcc	7	13	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	51425216	A	A	51425216	3	1	176	1	0	0	0	0	1	0	0	0	9315	1291	45	4	290	4	MANF	3	51425216	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	6883253	51425216	146597214	83	143310											
VPRBP	9730	broad.mit.edu	37	chr3	51440599	51440599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccaggatcagttccacCtcctcatctgcatcagagtc	6	17	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	51440599	A	A	51440599	3	1	176	1	0	0	0	0	1	0	0	0	17312	680	24	2	88	2	VPRBP	3	51440599	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	15383	51440599	146581831	84	143311											
DCP1A	55802	broad.mit.edu	37	chr3	53326882	53326882	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaatgaaaccacccaGtcaaagaggtctgttataaa	6	8	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	53326882	C	C	53326882	1	2	176	0	1	0	0	0	0	0	0	0	4331	1044	36	4		4	DCP1A	3	53326882	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	1886283	53326882	144695548	85	143312											
TOMM70A	9868	broad.mit.edu	37	chr3	100100548	100100548	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggaaatgatatcatcCgtgaaagaactgaagtaaga	12	5	1	5			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	100100548	A	A	100100548	2	1	176	1	0	0	0	0	0	0	0	1	16486	639	23	1		1	TOMM70A	3	100100548	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	46773666	100100548	97921882	86	143313											
MORC1	27136	broad.mit.edu	37	chr3	108776234	108776234	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccactttttcatgcattttGatcaaacggttattactgta	5	9	2	1	rs144305402		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108776234	A	A	108776234	2	1	176	1	0	0	0	0	0	0	0	1	9795	1280	45	4		4	MORC1	3	108776234	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	8675686	108776234	89246196	87	143314											
ATP6V1A	523	broad.mit.edu	37	chr3	113505180	113505180	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcactgagaagctgccAgccaatcatcctctgttgac	8	14	3	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	113505180	C	C	113505180	2	2	176	1	0	0	0	0	0	0	0	1	1181	175	7	5		5	ATP6V1A	3	113505180	Silent	SNP	A	TCGA-55-1594-01A-01D-1040-01	4728946	113505180	84517250	88	143315											
SEMA5B	54437	broad.mit.edu	37	chr3	122629997	122629997	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacaggaggctctgaggcatCctggaaagggctctgaggcc	15	10	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	122629997	G	G	122629997	1	3	176	0	1	0	0	0	0	0	0	0	14151	870	30	4		4	SEMA5B	3	122629997	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	9124817	122629997	75392433	89	143316											
CHCHD6	84303	broad.mit.edu	37	chr3	126676372	126676372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtcaaggcataccagcGctgcgtgagcgccgcccaca	12	16	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	126676372	A	A	126676372	3	1	176	1	0	0	0	0	1	0	0	0	3351	1087	38	4	706	4	CHCHD6	3	126676372	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	4046375	126676372	71346058	90	143317											
PLXND1	23129	broad.mit.edu	37	chr3	129308193	129308193	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatccccaaccatacctaCcttgagaagcctcccgttga	5	17	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	129308193	T	T	129308193	5	4	176	1	0	0	0	0	0	0	1	0	12222	521	18	4	4428	4	PLXND1	3	129308193	Splice_Site	SNP	C	TCGA-55-1594-01A-01D-1040-01	2631821	129308193	68714237	91	143318											
PCOLCE2	26577	broad.mit.edu	37	chr3	142539807	142539807	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaatcgccaaatttccctCtttgtagatgttgatgatcg	8	9	1	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	142539807	T	T	142539807	3	4	176	1	0	0	0	0	1	0	0	0	11689	922	32	4	225	4	PCOLCE2	3	142539807	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	13231614	142539807	55482623	92	143319											
CPB1	1360	broad.mit.edu	37	chr3	148552244	148552244	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcagattatccttcatccAttgaattataggtatccaat	5	9	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	148552244	G	G	148552244	1	3	176	0	1	0	0	0	0	0	0	0	3828	232	8	5		5	CPB1	3	148552244	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	6012437	148552244	49470186	93	143320											
CCDC39	339829	broad.mit.edu	37	chr3	180372586	180372586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctactagtttcatggtcCtgatatgccgttctacattt	6	9	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	180372586	A	A	180372586	3	1	176	1	0	0	0	0	1	0	0	0	2838	680	24	2	1987	2	CCDC39	3	180372586	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	31820342	180372586	17649844	94	143321											
FETUB	26998	broad.mit.edu	37	chr3	186358967	186358967	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaccattaagggccctagGgaaagcaagtaggtacactc	10	9	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	186358967	C	C	186358967	1	2	176	0	1	0	0	0	0	0	0	0	5878	1247	43	4		4	FETUB	3	186358967	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	5986381	186358967	11663463	95	143322											
FAM43A	131583	broad.mit.edu	37	chr3	194407563	194407563	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccctccggagatgctgcCgtggaagaagcacaagttcg	14	12	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	194407563	T	T	194407563	3	4	176	1	0	0	0	0	1	0	0	0	5613	652	23	4	10	4	FAM43A	3	194407563	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	8048596	194407563	3614867	96	143323											
TM4SF19	116211	broad.mit.edu	37	chr3	196050777	196050777	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggagcaggctgatgcacaGaagggcggagaagagggaca	18	7	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	196050777	T	T	196050777	3	4	176	1	0	0	0	0	1	0	0	0	16091	933	33	3	92	3	TM4SF19	3	196050777	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	1643214	196050777	1971653	97	143324											
ZNF141	7700	broad.mit.edu	37	chr4	367007	367007	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctataaatgtgaagaatgtGgcaaagcctttaataggttc	9	6	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	367007	A	A	367007	3	1	176	1	0	0	0	0	1	0	0	0	17856	1348	47	4	795	4	ZNF141	4	367007	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01		367007	190787269	98	143325											
PIGG	54872	broad.mit.edu	37	chr4	515659	515659	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtggggtgatggtgctgGcctcggcgctgctgtgtgtg	20	8	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	515659	C	C	515659	3	2	176	1	0	0	0	0	1	0	0	0	11983	1203	42	4	1573	4	PIGG	4	515659	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	148652	515659	190638617	99	143326											
PDE6B	5158	broad.mit.edu	37	chr4	657856	657856	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgggcgcttggggcggggTctccacacttgctcccacct	14	15	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	657856	A	A	657856	1	1	176	0	1	0	0	0	0	0	0	0	11740	1682	58	5		5	PDE6B	4	657856	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	142197	657856	190496420	100	143327											
NFXL1	152518	broad.mit.edu	37	chr4	47892633	47892633	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattattaaagtttacctcTgtgacagacagatggacact	7	8	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	47892633	G	G	47892633	2	3	176	1	0	0	0	0	0	0	0	1	10483	1588	55	5		5	NFXL1	4	47892633	Silent	SNP	T	TCGA-55-1594-01A-01D-1040-01	47234777	47892633	143261643	101	143328											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68934242	68934242	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaccctgaatggagcaaagGttaaactggagagactggac	12	8	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	68934242	C	C	68934242	1	2	176	0	1	0	0	0	0	0	0	0	16366	1276	44	4		4	TMPRSS11F	4	68934242	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	21041609	68934242	122220034	102	143329											
ENAM	10117	broad.mit.edu	37	chr4	71497370	71497370	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacagaccaaaaataaaaaTcaattttttattctaggtac	3	7	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71497370	A	A	71497370	1	1	176	0	1	0	0	0	0	0	0	0	5154	1450	50	5		5	ENAM	4	71497370	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	2563128	71497370	119656906	103	143330											
GRSF1	2926	broad.mit.edu	37	chr4	71701932	71701932	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagggcagtccttgagctcGaatgagaaagacatcatcca	10	11	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	71701932	C	C	71701932	3	2	176	1	0	0	0	0	1	0	0	0	6875	1066	37	4	1017	4	GRSF1	4	71701932	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	204562	71701932	119452344	104	143331											
CCDC158	339965	broad.mit.edu	37	chr4	77246898	77246898	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattacacagaatcagttaGagcttacacataagagcagc	7	8	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	77246898	C	C	77246898	1	2	176	0	1	0	0	0	0	0	0	0	2817	957	33	4		4	CCDC158	4	77246898	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	5544966	77246898	113907378	105	143332											
CCDC158	339965	broad.mit.edu	37	chr4	77247123	77247123	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcactggagacttcttaggaGaagaattgaatgaacgagaa	12	5	1	6			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	77247123	C	C	77247123	3	2	176	1	0	0	0	0	1	0	0	0	2817	942	33	4	309	4	CCDC158	4	77247123	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	225	77247123	113907153	106	143333											
CENPE	1062	broad.mit.edu	37	chr4	104061956	104061956	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atataatggtagggtaaagaGagaacacaactcactctagc	9	7	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	104061956	A	A	104061956	1	1	176	0	1	0	0	0	0	0	0	0	3260	957	33	4		4	CENPE	4	104061956	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	26814833	104061956	87092320	107	143334											
TRPC3	7222	broad.mit.edu	37	chr4	122828657	122828657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccgagagaagctgagcaCaacagctatggcataaaggc	11	9	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	122828657	A	A	122828657	3	1	176	1	0	0	0	0	1	0	0	0	16704	478	17	3	931	3	TRPC3	4	122828657	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	18766701	122828657	68325619	108	143335											
ODZ3	55714	broad.mit.edu	37	chr4	183664320	183664320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatgcactttatttcttcTaggtatactgtacaagggaa	7	7	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	183664320	C	C	183664320	1	2	176	0	1	0	0	0	0	0	0	0	10931	1537	53	5		5	ODZ3	4	183664320	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	60835663	183664320	7489956	109	143336											
CDH9	1007	broad.mit.edu	37	chr5	26881693	26881693	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattatcagaggttcctttTttctttgcctcttcaatgca	5	9	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	26881693	C	C	26881693	3	2	176	1	0	0	0	0	1	0	0	0	3147	1841	64	5	451	5	CDH9	5	26881693	Missense_Mutation	SNP	T	TCGA-55-1594-01A-01D-1040-01		26881693	154033567	110	143337											
C5orf42	65250	broad.mit.edu	37	chr5	37170015	37170015	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttttgtatttttagtagaGacggggtttcacgatgttgg	12	4	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	37170015	C	C	37170015	1	2	176	0	1	0	0	0	0	0	0	0	2324	957	33	4		4	C5orf42	5	37170015	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	10288322	37170015	143745245	111	143338											
WDR70	55100	broad.mit.edu	37	chr5	37727024	37727024	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacccacgggggcactctctCttcctatattgtgaagaaca	8	12	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	37727024	G	G	37727024	3	3	176	1	0	0	0	0	1	0	0	0	17448	913	32	4	1820	4	WDR70	5	37727024	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	557009	37727024	143188236	112	143339											
EGFLAM	133584	broad.mit.edu	37	chr5	38406296	38406296	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatgggagctggtgaggatGatgaaggatttgaagacgac	16	4	0	5			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	38406296	A	A	38406296	3	1	176	1	0	0	0	0	1	0	0	0	5006	1290	45	4	821	4	EGFLAM	5	38406296	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	679272	38406296	142508964	113	143340											
IQGAP2	10788	broad.mit.edu	37	chr5	75914498	75914498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagtattaacataaatGtatagttcaagagaaaagaa	7	2	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	75914498	T	T	75914498	1	4	176	0	1	0	0	0	0	0	0	0	7885	1392	48	3		3	IQGAP2	5	75914498	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	37508202	75914498	105000762	114	143341											
CMYA5	202333	broad.mit.edu	37	chr5	79054629	79054629	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaattctgccaccagcacaAcaattgcagtttactggagc	7	12	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	79054629	G	G	79054629	3	3	176	1	0	0	0	0	1	0	0	0	3622	43	2	5	11190	5	CMYA5	5	79054629	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	3140131	79054629	101860631	115	143342											
SLCO4C1	353189	broad.mit.edu	37	chr5	101631628	101631628	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaccttgcgtgacggccaaGaggcagtagtgaagcagaaa	13	8	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	101631628	A	A	101631628	2	1	176	1	0	0	0	0	0	0	0	1	14844	929	33	4		4	SLCO4C1	5	101631628	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	22576999	101631628	79283632	116	143343											
SLC22A4	6583	broad.mit.edu	37	chr5	131630701	131630701	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtccaccgtcgtgaccgAggtgggtgccaggccgagac	15	14	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	131630701	T	T	131630701	3	4	176	1	0	0	0	0	1	0	0	0	14570	318	11	5	394	5	SLC22A4	5	131630701	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	29999073	131630701	49284559	117	143344											
HSPA4	3308	broad.mit.edu	37	chr5	132388063	132388063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgccgtaagtgtgggccGggcctgccgcgtgcactggg	18	13	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	132388063	T	T	132388063	1	4	176	0	1	0	0	0	0	0	0	0	7481	1131	39	1		1	HSPA4	5	132388063	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	757362	132388063	48527197	118	143345											
PCDHB1	29930	broad.mit.edu	37	chr5	140431299	140431299	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccggctccaccgcaagacgGgagatttgtttgtgaaggag	14	9	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	140431299	C	C	140431299	3	2	176	1	0	0	0	0	1	0	0	0	11628	1233	43	4	246	4	PCDHB1	5	140431299	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	8043236	140431299	40483961	119	143346											
PCDHB4	56131	broad.mit.edu	37	chr5	140503320	140503320	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgccccgggcggccgaGccgggctacctggtgaccaa	16	15	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	140503320	A	A	140503320	2	1	176	1	0	0	0	0	0	0	0	1	11638	962	34	4		4	PCDHB4	5	140503320	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	72021	140503320	40411940	120	143347											
PCDHB7	56129	broad.mit.edu	37	chr5	140553584	140553584	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccatccaggacgatgtcCccttcatcctgaagccatct	7	16	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	140553584	T	T	140553584	3	4	176	1	0	0	0	0	1	0	0	0	11641	623	22	4	1170	4	PCDHB7	5	140553584	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	50264	140553584	40361676	121	143348											
FBXO38	81545	broad.mit.edu	37	chr5	147820885	147820885	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatatctttttgtgagttagGagcagtgcagtgttaaatgg	12	3	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	147820885	C	C	147820885	1	2	176	0	1	0	0	0	0	0	0	0	5803	1189	41	4		4	FBXO38	5	147820885	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	7267301	147820885	33094375	122	143349											
CD74	972	broad.mit.edu	37	chr5	149792008	149792008	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaccccctcatttgacaaGagagggagccggagcccaga	13	12	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	149792008	C	C	149792008	1	2	176	0	1	0	0	0	0	0	0	0	3065	957	33	4		4	CD74	5	149792008	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	1971123	149792008	31123252	123	143350											
GABRP	2568	broad.mit.edu	37	chr5	170224461	170224461	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgtttttgaacctgtttttCcctcttagaatcacgacaac	5	11	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	170224461	G	G	170224461	1	3	176	0	1	0	0	0	0	0	0	0	6234	870	30	4		4	GABRP	5	170224461	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	20432453	170224461	10690799	124	143351											
RMND5B	64777	broad.mit.edu	37	chr5	177570722	177570722	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaacaagacctgggtcctgCgttggagtaaggaggccctt	14	10	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	177570722	T	T	177570722	3	4	176	1	0	0	0	0	1	0	0	0	13509	768	27	4	535	4	RMND5B	5	177570722	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	7346261	177570722	3344538	125	143352											
CAP2	10486	broad.mit.edu	37	chr6	17551851	17551851	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attatgtaagtacctttcaaAaggctgtcaagaatttttct	6	6	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	17551851	T	T	17551851	1	4	176	0	1	0	0	0	0	0	0	0	2646	29	1	5		5	CAP2	6	17551851	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01		17551851	153563216	126	143353											
HIST1H3C	8352	broad.mit.edu	37	chr6	26044317	26044317	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagtccgtcatctttttcGaaagggcaattattttgagc	9	8	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	26044317	A	A	26044317	1	1	176	0	1	0	0	0	0	0	0	0	7224	1073	37	4		4	HIST1H3C	6	26044317	5'Flank	SNP	G	TCGA-55-1594-01A-01D-1040-01	8492466	26044317	145070750	127	143354											
SLC44A4	80736	broad.mit.edu	37	chr6	31833121	31833121	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcgcatgagtagcatgaaCgcatttttggctgagacaca	10	8	0	3	rs142009471		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31833121	T	T	31833121	2	4	176	1	0	0	0	0	0	0	0	1	14752	523	19	4		4	SLC44A4	6	31833121	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	5788804	31833121	139281946	128	143355											
ITPR3	3710	broad.mit.edu	37	chr6	33632679	33632679	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggctgcggcacctctgcaCcaacacgtggattcagagca	11	15	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	33632679	A	A	33632679	3	1	176	1	0	0	0	0	1	0	0	0	7992	507	18	3	1227	3	ITPR3	6	33632679	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1799558	33632679	137482388	129	143356											
SLC35A1	10559	broad.mit.edu	37	chr6	88218187	88218187	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagatacttctctttgggtGagaaacattcaaatgtatct	7	7	4	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	88218187	A	A	88218187	2	1	176	1	0	0	0	0	0	0	0	1	14684	1277	45	4		4	SLC35A1	6	88218187	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	54585508	88218187	82896880	130	143357											
UBE2J1	51465	broad.mit.edu	37	chr6	90062268	90062268	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctgctcacccggactcttCaggttgtagcgggtctccat	10	15	4	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	90062268	A	A	90062268	2	1	176	1	0	0	0	0	0	0	0	1	16986	813	29	3		3	UBE2J1	6	90062268	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	1844081	90062268	81052799	131	143358											
FAM184A	79632	broad.mit.edu	37	chr6	119345909	119345909	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatttgttgaatttcttcttCatgagcatctttgagggctt	8	6	4	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	119345909	T	T	119345909	3	4	176	1	0	0	0	0	1	0	0	0	5557	835	29	4	3261	4	FAM184A	6	119345909	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	29283641	119345909	51769158	132	143359											
MYB	4602	broad.mit.edu	37	chr6	135515666	135515666	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtttacctaagcgctcttCtcttctaaatattacactta	3	11	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	135515666	T	T	135515666	1	4	176	0	1	0	0	0	0	0	0	0	10101	928	32	4		4	MYB	6	135515666	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	16169757	135515666	35599401	133	143360											
UTRN	7402	broad.mit.edu	37	chr6	144811456	144811456	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatgtaaaccatgggatggGagtgatgatgtgttgaaggt	16	2	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	144811456	T	T	144811456	1	4	176	0	1	0	0	0	0	0	0	0	17230	1189	41	3		3	UTRN	6	144811456	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	9295790	144811456	26303611	134	143361											
IL6	3569	broad.mit.edu	37	chr7	22768236	22768236	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agactttcctggctgtggttGaacaatgaaaaggccctcta	10	9	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	22768236	C	C	22768236	1	2	176	0	1	0	0	0	0	0	0	0	7771	1305	45	4		4	IL6	7	22768236	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01		22768236	136370427	135	143362											
C7orf36	57002	broad.mit.edu	37	chr7	39612310	39612310	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcaaacaactataaaattAccttcccttttctaatgaaa	1	11	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	39612310	G	G	39612310	1	3	176	0	1	0	0	0	0	0	0	0	2415	406	14	5		5	C7orf36	7	39612310	3'UTR	SNP	A	TCGA-55-1594-01A-01D-1040-01	16844074	39612310	119526353	136	143363											
ZNF655	79027	broad.mit.edu	37	chr7	99171066	99171066	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgagtatgagggcagtttCagtcatagctcagatcttat	10	6	4	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	99171066	T	T	99171066	2	4	176	1	0	0	0	0	0	0	0	1	18195	825	29	4		4	ZNF655	7	99171066	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	59558756	99171066	59967597	137	143364											
LRCH4	4034	broad.mit.edu	37	chr7	100179736	100179736	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgttgttgctgacgatgagGaccctcaggggcagctggca	15	9	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	100179736	T	T	100179736	2	4	176	1	0	0	0	0	0	0	0	1	9022	1161	41	3		3	LRCH4	7	100179736	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	1008670	100179736	58958927	138	143365											
TFR2	7036	broad.mit.edu	37	chr7	100225837	100225837	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctaacgacctgcccgggacCccgtatcacctctagccact	7	19	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	100225837	G	G	100225837	1	3	176	0	1	0	0	0	0	0	0	0	15934	638	22	4		4	TFR2	7	100225837	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	46101	100225837	58912826	139	143366											
WASL	8976	broad.mit.edu	37	chr7	123332372	123332372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccattatgataaaggatcTaaaatgaaaaaaaaaaaagc	5	4	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	123332372	C	C	123332372	1	2	176	0	1	0	0	0	0	0	0	0	17383	1537	53	5		5	WASL	7	123332372	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	23106535	123332372	35806291	140	143367											
SPAM1	6677	broad.mit.edu	37	chr7	123599915	123599915	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctaaaacctcccatggaGacagaagaacctcaaatttt	5	10	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	123599915	A	A	123599915	2	1	176	1	0	0	0	0	0	0	0	1	15102	933	33	4		4	SPAM1	7	123599915	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	267543	123599915	35538748	141	143368											
NRF1	4899	broad.mit.edu	37	chr7	129317693	129317693	+	Intron	SNP	C	T	T													aagtataacagttggcatttCtgttaccccctaatccaggc							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	129317693	T	T	129317693	1	4	176	0	1	0	0	0	0	0	0	0	10741	928	32	4		4	NRF1	7	129317693	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	5717778	129317693	29820970	142	143369	614	2									
NRF1	4899	broad.mit.edu	37	chr7	129317702	129317702	+	Intron	SNP	C	T	T													agttggcatttctgttacccCctaatccaggcatgggagtg							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	129317702	T	T	129317702	1	4	176	0	1	0	0	0	0	0	0	0	10741	638	22	4		4	NRF1	7	129317702	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	9	129317702	29820961	143	143370	614	2									
KIAA1549	57670	broad.mit.edu	37	chr7	138552664	138552664	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctcctcccctttcagcgCatctttctaggagccgcccc	6	19	4	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	138552664	A	A	138552664	1	1	176	0	1	0	0	0	0	0	0	0	8314	725	25	3		3	KIAA1549	7	138552664	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	9234962	138552664	20585999	144	143371											
GALNT11	63917	broad.mit.edu	37	chr7	151818708	151818708	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggtcagaagggctctgtCgccatggcgatctgcgatgg	16	10	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	151818708	T	T	151818708	2	4	176	1	0	0	0	0	0	0	0	1	6271	871	31	4		4	GALNT11	7	151818708	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	13266044	151818708	7319955	145	143372											
PRSS55	203074	broad.mit.edu	37	chr8	10395959	10395959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcttagaaccggactccCtgctgagctgtgttctctgc	11	13	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	10395959	A	A	10395959	1	1	176	0	1	0	0	0	0	0	0	0	12740	696	24	2		2	PRSS55	8	10395959	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01		10395959	135968063	146	143373											
SLC18A1	6570	broad.mit.edu	37	chr8	20016680	20016680	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccatgctccaatgttgatGacatcgaaagcacccctctc	7	15	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	20016680	T	T	20016680	1	4	176	0	1	0	0	0	0	0	0	0	14538	1305	45	3		3	SLC18A1	8	20016680	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	9620721	20016680	126347342	147	143374											
LZTS1	11178	broad.mit.edu	37	chr8	20112537	20112537	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttggagctggacttgccGtgaccggagtcctgggagaa	15	8	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20112537	A	A	20112537	2	1	176	1	0	0	0	0	0	0	0	1	9226	1136	40	4		4	LZTS1	8	20112537	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	95857	20112537	126251485	148	143375											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24249672	24249672	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctacataggaatgtagtCttcactgctctttcagcaac	6	11	5	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	24249672	A	A	24249672	1	1	176	0	1	0	0	0	0	0	0	0	254	928	32	3		3	ADAMDEC1	8	24249672	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	4137135	24249672	122114350	149	143376											
EBF2	64641	broad.mit.edu	37	chr8	25766150	25766150	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agctgcattccattagatttGatttgacagcgattctattt	7	7	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	25766150	C	C	25766150	1	2	176	0	1	0	0	0	0	0	0	0	4921	1305	45	4		4	EBF2	8	25766150	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	1516478	25766150	120597872	150	143377											
GPR124	25960	broad.mit.edu	37	chr8	37692771	37692771	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctgcacagccttccagaGgagggagggaggggtgccgg	19	10	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	37692771	A	A	37692771	3	1	176	1	0	0	0	0	1	0	0	0	6703	1000	35	4	1713	4	GPR124	8	37692771	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	11926621	37692771	108671251	151	143378											
C8orf86	389649	broad.mit.edu	37	chr8	38385739	38385739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactgagcacacacacacCccgccctgactgacacacaa	6	18	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	38385739	A	A	38385739	1	1	176	0	1	0	0	0	0	0	0	0	2468	638	22	2		2	C8orf86	8	38385739	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	692968	38385739	107978283	152	143379											
LYN	4067	broad.mit.edu	37	chr8	56862931	56862931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaatatctgtacataaataCatatttatgggatatctgtg	7	4	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	56862931	T	T	56862931	1	4	176	0	1	0	0	0	0	0	0	0	9195	493	17	4		4	LYN	8	56862931	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	18477192	56862931	89501091	153	143380											
MSC	9242	broad.mit.edu	37	chr8	72754901	72754901	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagttccagtccgatttaagCggtggttccacatagtctgt	11	9	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72754901	T	T	72754901	3	4	176	1	0	0	0	0	1	0	0	0	9962	768	27	4	8	4	MSC	8	72754901	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	15891970	72754901	73609121	154	143381											
PI15	51050	broad.mit.edu	37	chr8	75756265	75756266	+	Missense_Mutation	DNP	GC	AT	AT													agaggcttgggcggctacttGcatttgggaccatggacctt							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	75756266	AT	AT	75756265	3	1	176	1	0	0	0	0	1	0	0	0	11963	1319	46	4	329	4	PI15	8	75756265	Missense_Mutation	DNP	GC	TCGA-55-1594-01A-01D-1040-01	3001364	75756265	70607757	155	143382											
TMEM67	91147	broad.mit.edu	37	chr8	94808055	94808055	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaaaaaaaaacaaaaaCgaaaacaaaaaacaaacaaa	1	8	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	94808055	G	G	94808055	1	3	176	0	1	0	0	0	0	0	0	0	16319	551	19	4		4	TMEM67	8	94808055	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	19051790	94808055	51555967	156	143383											
INTS8	55656	broad.mit.edu	37	chr8	95877661	95877661	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattccatctttcctccagtGtgccttgataatagaactaa	5	11	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	95877661	A	A	95877661	1	1	176	0	1	0	0	0	0	0	0	0	7854	1392	48	4		4	INTS8	8	95877661	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	1069606	95877661	50486361	157	143384											
TAF2	6873	broad.mit.edu	37	chr8	120818424	120818424	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgctgggattacaggcatGaggcacagtgcctgcatcat	13	9	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	120818424	A	A	120818424	1	1	176	0	1	0	0	0	0	0	0	0	15643	1305	45	4		4	TAF2	8	120818424	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	24940763	120818424	25545598	158	143385											
CDKN2A	1029	broad.mit.edu	37	chr9	21971057	21971058	+	Frame_Shift_Ins	INS	-	A	A													cgcacgtccagccgcgccccINSggcccggtgcagcaccacca					rs104894094		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	21971058	A	A	21971057	7	5	176	1	0	1	1	0	0	0	0	0	3191	652	23	0	177	0	CDKN2A	9	21971057	Frame_Shift_Ins	INS	-	TCGA-55-1594-01A-01D-1040-01		21971057	119242374	159	143386											
C9orf131	138724	broad.mit.edu	37	chr9	35042966	35042966	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggggaagacgaggcatctCtggatccactgaagccatgt	14	9	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	35042966	A	A	35042966	3	1	176	1	0	0	0	0	1	0	0	0	2483	912	32	3	362	3	C9orf131	9	35042966	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	13071909	35042966	106170465	160	143387											
VCP	7415	broad.mit.edu	37	chr9	35059557	35059557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacttctcatcaggaagtGggatgtagatgagctgatca	14	6	3	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	35059557	T	T	35059557	3	4	176	1	0	0	0	0	1	0	0	0	17267	1348	47	2	499	2	VCP	9	35059557	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	16591	35059557	106153874	161	143388											
RECK	8434	broad.mit.edu	37	chr9	36112407	36112407	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggcctccaagaccatcAgtttgagtttggatcatgca	11	9	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	36112407	T	T	36112407	3	4	176	1	0	0	0	0	1	0	0	0	13308	188	7	5	2056	5	RECK	9	36112407	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	1052850	36112407	105101024	162	143389											
FAM75A2	642265	broad.mit.edu	37	chr9	39361117	39361117	+	Frame_Shift_Del	DEL	G	-	-													agtctaggaagcccaacttaGaaaaacatgaagaaaggctt							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	39361117	-	-	39361117	7	5	176	1	0	1	0	1	0	0	0	0	5671	943	33	0	3369	0	FAM75A2	9	39361117	Frame_Shift_Del	DEL	G	TCGA-55-1594-01A-01D-1040-01	3248710	39361117	101852314	163	143390											
GOLM1	51280	broad.mit.edu	37	chr9	88661457	88661457	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacatcctgctgcagcctgCcgtaattcctctgcagggtc	11	14	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	88661457	G	G	88661457	3	3	176	1	0	0	0	0	1	0	0	0	6631	739	26	4	834	4	GOLM1	9	88661457	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	49300340	88661457	52551974	164	143391											
HSDL2	84263	broad.mit.edu	37	chr9	115171264	115171264	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctaccaagagattggatCtgatgatgaacgtgaacacc	9	10	1	5			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	115171264	G	G	115171264	3	3	176	1	0	0	0	0	1	0	0	0	7461	912	32	4	372	4	HSDL2	9	115171264	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	26509807	115171264	26042167	165	143392											
GOLGA1	2800	broad.mit.edu	37	chr9	127693657	127693657	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagaagctgggatgaaagaTcttctctggagctgcttcca	11	9	3	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	127693657	C	C	127693657	3	2	176	1	0	0	0	0	1	0	0	0	6615	1435	50	5	2219	5	GOLGA1	9	127693657	Missense_Mutation	SNP	T	TCGA-55-1594-01A-01D-1040-01	12522393	127693657	13519774	166	143393											
NOXA1	10811	broad.mit.edu	37	chr9	140327948	140327948	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctggtgactgtcaccgTgcagtgcgccttcacagtgg	13	14	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	140327948	C	C	140327948	3	2	176	1	0	0	0	0	1	0	0	0	10655	1696	59	5	995	5	NOXA1	9	140327948	Missense_Mutation	SNP	T	TCGA-55-1594-01A-01D-1040-01	12634291	140327948	885483	167	143394											
NSUN6	221078	broad.mit.edu	37	chr10	18937479	18937479	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgaggctaaatgtgtattCactctgacagttgtaaatga	9	6	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	18937479	T	T	18937479	2	4	176	1	0	0	0	0	0	0	0	1	10777	813	29	4		4	NSUN6	10	18937479	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01		18937479	116597268	168	143395											
MYO3A	53904	broad.mit.edu	37	chr10	26462560	26462560	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taataagctccagtttagtaCtgtatattcaaagataatat	5	5	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26462560	T	T	26462560	1	4	176	0	1	0	0	0	0	0	0	0	10170	580	20	4		4	MYO3A	10	26462560	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	7525081	26462560	109072187	169	143396											
C10orf10	11067	broad.mit.edu	37	chr10	45472741	45472741	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctctgcagaaaagcatttCcctttcagagacctgccagg	9	13	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	45472741	T	T	45472741	1	4	176	0	1	0	0	0	0	0	0	0	1590	870	30	4		4	C10orf10	10	45472741	3'UTR	SNP	C	TCGA-55-1594-01A-01D-1040-01	19010181	45472741	90062006	170	143397											
OGDHL	55753	broad.mit.edu	37	chr10	50959811	50959811	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctctcttaggcagggtgtgGgacgtctcatagagccctgg	15	10	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	50959811	C	C	50959811	1	2	176	0	1	0	0	0	0	0	0	0	10935	1247	43	4		4	OGDHL	10	50959811	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	5487070	50959811	84574936	171	143398											
TTC18	118491	broad.mit.edu	37	chr10	75056951	75056951	+	Intron	DEL	C	-	-													gctgcaagacacacagatcaCccatctgataatacagtcca							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	75056951	-	-	75056951	6	5	176	0	1	1	0	1	0	0	0	0	16811	522	18	0		0	TTC18	10	75056951	Intron	DEL	C	TCGA-55-1594-01A-01D-1040-01	24097140	75056951	60477796	172	143399											
HHEX	3087	broad.mit.edu	37	chr10	94452138	94452138	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcgcaggcaaacctctactCtggagccccttcttgcagag	9	15	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	94452138	G	G	94452138	2	3	176	1	0	0	0	0	0	0	0	1	7158	900	32	4		4	HHEX	10	94452138	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	19395187	94452138	41082609	173	143400											
GPR120	338557	broad.mit.edu	37	chr10	95327092	95327092	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggtgtcctgcgcaggctggGaagcggggccccgacggaag	19	11	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	95327092	C	C	95327092	1	2	176	0	1	0	0	0	0	0	0	0	6701	1189	41	4		4	GPR120	10	95327092	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	874954	95327092	40207655	174	143401											
LGI1	9211	broad.mit.edu	37	chr10	95549856	95549856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttttttttttttttccagGagccttgcaaacaacaatct	4	9	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	95549856	T	T	95549856	3	4	176	1	0	0	0	0	1	0	0	0	8823	1188	41	3	450	3	LGI1	10	95549856	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	222764	95549856	39984891	175	143402											
HELLS	3070	broad.mit.edu	37	chr10	96322517	96322517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctagttttgaagaatatGcgtttatatttctattttaa	5	3	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	96322517	T	T	96322517	1	4	176	0	1	0	0	0	0	0	0	0	7113	1334	46	3		3	HELLS	10	96322517	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	772661	96322517	39212230	176	143403											
SEC31B	25956	broad.mit.edu	37	chr10	102249672	102249672	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accctccacccaacagggccCtagccctctgacttgaggaa	8	17	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	102249672	T	T	102249672	1	4	176	0	1	0	0	0	0	0	0	0	14112	696	24	4		4	SEC31B	10	102249672	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	5927155	102249672	33285075	177	143404											
SORCS1	114815	broad.mit.edu	37	chr10	108434855	108434855	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccagaaccccatccacaAaaagtggaatagatgtgaaa	7	11	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	108434855	C	C	108434855	3	2	176	1	0	0	0	0	1	0	0	0	15044	14	1	5	1900	5	SORCS1	10	108434855	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	6185183	108434855	27099892	178	143405											
SORCS1	114815	broad.mit.edu	37	chr10	108521457	108521457	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactcagcactatggttctaTagtacatcaaatacacaaac	4	10	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	108521457	G	G	108521457	1	3	176	0	1	0	0	0	0	0	0	0	15044	1421	49	5		5	SORCS1	10	108521457	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	86602	108521457	27013290	179	143406											
AFAP1L2	84632	broad.mit.edu	37	chr10	116059242	116059242	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggctgtccccagtctactCcccaggctcggatagaacct	10	15	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	116059242	A	A	116059242	1	1	176	0	1	0	0	0	0	0	0	0	355	870	30	3		3	AFAP1L2	10	116059242	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	7537785	116059242	19475505	180	143407											
KCNK18	338567	broad.mit.edu	37	chr10	118969302	118969302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggccccaaacttggcaCatgtccttcacgcccaagct	7	17	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969302	A	A	118969302	3	1	176	1	0	0	0	0	1	0	0	0	8135	478	17	3	657	3	KCNK18	10	118969302	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	2910060	118969302	16565445	181	143408											
CTBP2	1488	broad.mit.edu	37	chr10	126683170	126683170	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgcccagggaccgctcgatCccatcctgcaagtaggggtc	12	15	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	126683170	A	A	126683170	2	1	176	1	0	0	0	0	0	0	0	1	4032	842	30	3		3	CTBP2	10	126683170	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	7713868	126683170	8851577	182	143409											
EBF3	253738	broad.mit.edu	37	chr10	131646712	131646712	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcactttctgcaacctctGaaagccgtaatctatggttg	8	10	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	131646712	A	A	131646712	4	1	176	1	0	0	0	0	0	1	0	0	4922	1299	45	4	634	4	EBF3	10	131646712	Nonsense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	4963542	131646712	3888035	183	143410											
GPR123	84435	broad.mit.edu	37	chr10	134896297	134896297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgtaagcctggatgcGtgtgccagggccttgcgctg	14	14	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	134896297	A	A	134896297	3	1	176	1	0	0	0	0	1	0	0	0	6702	1160	40	4		4	GPR123	10	134896297	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	3249585	134896297	638450	184	143411											
OR51Q1	390061	broad.mit.edu	37	chr11	5444131	5444131	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgggcacagccacctgggCtgagcgactccgtgccctca	12	16	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	5444131	A	A	5444131	3	1	176	1	0	0	0	0	1	0	0	0	11198	797	28	3	703	3	OR51Q1	11	5444131	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01		5444131	129562385	185	143412											
OR56A3	390083	broad.mit.edu	37	chr11	5969183	5969183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatcaatcacctttacCaatttgctggaggctggact	7	12	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	5969183	A	A	5969183	3	1	176	1	0	0	0	0	1	0	0	0	11228	595	21	2	609	2	OR56A3	11	5969183	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	525052	5969183	129037333	186	143413											
USP47	55031	broad.mit.edu	37	chr11	11941942	11941942	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accttacagctgaaaagattCgattttgattatacaaccat	5	8	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11941942	T	T	11941942	2	4	176	1	0	0	0	0	0	0	0	1	17205	883	31	4		4	USP47	11	11941942	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	5972759	11941942	123064574	187	143414											
LDHC	3948	broad.mit.edu	37	chr11	18456297	18456297	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttcttagtggatattttGacatatatagtctggaagat	8	4	3	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	18456297	C	C	18456297	3	2	176	1	0	0	0	0	1	0	0	0	8774	1281	45	4	443	4	LDHC	11	18456297	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	6514355	18456297	116550219	188	143415											
LDHAL6A	160287	broad.mit.edu	37	chr11	18487467	18487467	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttggggtaggattgatcctGccacccaggtactgagcaaa	12	9	0	2	rs112394064		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18487467	A	A	18487467	1	1	176	0	1	0	0	0	0	0	0	0	8771	1334	46	4		4	LDHAL6A	11	18487467	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	31170	18487467	116519049	189	143416											
MRGPRX2	117194	broad.mit.edu	37	chr11	19077532	19077532	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacaggtgtctggggcggcGgcagcgataccagatgggcc	18	10	1	2	rs60756581	byFrequency;by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	19077532	A	A	19077532	3	1	176	1	0	0	0	0	1	0	0	0	9861	1116	39	4	578	4	MRGPRX2	11	19077532	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	590065	19077532	115928984	190	143417											
LUZP2	338645	broad.mit.edu	37	chr11	25004819	25004819	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atattgcctctaagcttccaGatgcagcggccaaaagcaag	9	11	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	25004819	T	T	25004819	3	4	176	1	0	0	0	0	1	0	0	0	9174	942	33	3	779	3	LUZP2	11	25004819	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	5927287	25004819	110001697	191	143418											
OR4C11	219429	broad.mit.edu	37	chr11	55371624	55371624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccacaattaatctaggggCtgtggaagttgaaaagcaag	11	6	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55371624	A	A	55371624	3	1	176	1	0	0	0	0	1	0	0	0	11139	797	28	3	708	3	OR4C11	11	55371624	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	30366805	55371624	79634892	192	143419											
OR8H3	390152	broad.mit.edu	37	chr11	55889777	55889777	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attctcctgcctcagcttctCcagtagctgggagtacaggc	10	13	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	55889777	G	G	55889777	1	3	176	0	1	0	0	0	0	0	0	0	11333	870	30	4		4	OR8H3	11	55889777	5'Flank	SNP	C	TCGA-55-1594-01A-01D-1040-01	518153	55889777	79116739	193	143420											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57080108	57080108	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagccaggaggtcgtccAgccagcgggagctgctttca	15	11	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	57080108	G	G	57080108	3	3	176	1	0	0	0	0	1	0	0	0	16443	188	7	5	3163	5	TNKS1BP1	11	57080108	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	1190331	57080108	77926408	194	143421											
ZFP91	80829	broad.mit.edu	37	chr11	58380428	58380428	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcattgacatgtaatgtcaAgaaaagtctttctttaaaca	5	6	4	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	58380428	T	T	58380428	1	4	176	0	1	0	0	0	0	0	0	0	17781	87	3	5		5	ZFP91	11	58380428	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	1300320	58380428	76626088	195	143422											
PLCB3	5331	broad.mit.edu	37	chr11	64029532	64029532	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggtgccagcttgttgcgctCaacttccagaccctcggtga	12	13	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	64029532	T	T	64029532	2	4	176	1	0	0	0	0	0	0	0	1	12124	813	29	4		4	PLCB3	11	64029532	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	5649104	64029532	70976984	196	143423											
SPDYC	387778	broad.mit.edu	37	chr11	64940248	64940248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgtccacaggtccctgttCgccttccccggggccctggc	11	18	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	64940248	T	T	64940248	3	4	176	1	0	0	0	0	1	0	0	0	15144	884	31	4	632	4	SPDYC	11	64940248	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	910716	64940248	70066268	197	143424											
LTBP3	4054	broad.mit.edu	37	chr11	65318931	65318931	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggctctgctgcactgacctCtcctcactcaccggctgcgg	10	17	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	65318931	G	G	65318931	3	3	176	1	0	0	0	0	1	0	0	0	9162	912	32	4	2424	4	LTBP3	11	65318931	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	378683	65318931	69687585	198	143425											
PELI3	246330	broad.mit.edu	37	chr11	66239989	66239989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggccaccaggcctctaggCtctgcaagcatttcaggtga	11	13	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	66239989	T	T	66239989	1	4	176	0	1	0	0	0	0	0	0	0	11817	812	28	4		4	PELI3	11	66239989	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	921058	66239989	68766527	199	143426											
GPR152	390212	broad.mit.edu	37	chr11	67219321	67219321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccatgaggcagaggaagGggctgaggcagctgttgagt	19	6	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	67219321	T	T	67219321	3	4	176	1	0	0	0	0	1	0	0	0	6723	1232	43	2	541	2	GPR152	11	67219321	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	979332	67219321	67787195	200	143427											
C11orf30	56946	broad.mit.edu	37	chr11	76227233	76227233	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagtgagcccatccattggtCggatggctgcaacccctgga	12	13	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	76227233	T	T	76227233	3	4	176	1	0	0	0	0	1	0	0	0	1648	875	31	4	1599	4	C11orf30	11	76227233	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	9007912	76227233	58779283	201	143428											
MYO7A	4647	broad.mit.edu	37	chr11	76871264	76871264	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaccctcatcacccgcgGggagacggtgtccaccccac	10	20	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	76871264	C	C	76871264	3	2	176	1	0	0	0	0	1	0	0	0	10176	1232	43	4	1174	4	MYO7A	11	76871264	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	644031	76871264	58135252	202	143429											
SYTL2	54843	broad.mit.edu	37	chr11	85431864	85431864	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cataggcatttttaagcttaGatggggcatgaacagtgagg	13	5	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	85431864	C	C	85431864	1	2	176	0	1	0	0	0	0	0	0	0	15602	957	33	4		4	SYTL2	11	85431864	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	8560600	85431864	49574652	203	143430											
CEP57	9702	broad.mit.edu	37	chr11	95546154	95546154	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgacgcttggaacttgagagGattcaggcagaagaaagtgt	14	6	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	95546154	C	C	95546154	3	2	176	1	0	0	0	0	1	0	0	0	3286	1165	41	4	271	4	CEP57	11	95546154	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	10114290	95546154	39460362	204	143431											
EXPH5	23086	broad.mit.edu	37	chr11	108380461	108380461	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgggagggttcctcaaatCatcttttaggaagccagggt	13	7	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	108380461	T	T	108380461	3	4	176	1	0	0	0	0	1	0	0	0	5365	826	29	4	200	4	EXPH5	11	108380461	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	12834307	108380461	26626055	205	143432											
USP28	57646	broad.mit.edu	37	chr11	113672136	113672136	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtttggcaaccagtgcTatcaagtgagaacactgaaa	10	7	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	113672136	C	C	113672136	1	2	176	0	1	0	0	0	0	0	0	0	17185	1537	53	5		5	USP28	11	113672136	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	5291675	113672136	21334380	206	143433											
HMBS	3145	broad.mit.edu	37	chr11	118960268	118960268	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcatgctcctgagatcttGagaaggtgtgcttcctgaac	10	9	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	118960268	C	C	118960268	1	2	176	0	1	0	0	0	0	0	0	0	7286	1305	45	4		4	HMBS	11	118960268	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	5288132	118960268	16046248	207	143434											
IGSF9B	22997	broad.mit.edu	37	chr11	133807236	133807236	+	Intron	DEL	C	-	-													gctggacatccccgcgggagCccagggttaaagaggctgag							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	133807236	-	-	133807236	6	5	176	0	1	1	0	1	0	0	0	0	7676	754	26	0		0	IGSF9B	11	133807236	Intron	DEL	C	TCGA-55-1594-01A-01D-1040-01	14846968	133807236	1199280	208	143435											
PARP11	57097	broad.mit.edu	37	chr12	3938098	3938098	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaagtctatcttgtagctGaatttggaagtagtaaaaga	10	4	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	3938098	A	A	3938098	2	1	176	1	0	0	0	0	0	0	0	1	11550	1281	45	4		4	PARP11	12	3938098	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01		3938098	129913797	209	143436											
TAS2R31	259290	broad.mit.edu	37	chr12	11183906	11183907	+	Frame_Shift_Ins	INS	-	A	A													tagaaccactaccacactggINSaaaaaatgatgggtataaaa							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	11183907	A	A	11183906	7	5	176	1	0	1	1	0	0	0	0	0	15693	1174	41	0	904	0	TAS2R31	12	11183906	Frame_Shift_Ins	INS	-	TCGA-55-1594-01A-01D-1040-01	7245808	11183906	122667989	210	143437											
ERP27	121506	broad.mit.edu	37	chr12	15091227	15091227	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	accaggcaaaatgcacttatCcaggatttcctggaaagctt	8	10	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	15091227	G	G	15091227	1	3	176	0	1	0	0	0	0	0	0	0	5283	870	30	4		4	ERP27	12	15091227	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	3907321	15091227	118760668	211	143438											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777292	43777292	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttatacccagtttcagcTgtgtcaaattgtagatccag	7	8	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	43777292	A	A	43777292	1	1	176	0	1	0	0	0	0	0	0	0	266	1595	55	5		5	ADAMTS20	12	43777292	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	28686065	43777292	90074603	212	143439											
DBX2	440097	broad.mit.edu	37	chr12	45429903	45429903	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggtttggaaggtgctgcaGagaaagcattgatctcattg	13	5	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	45429903	A	A	45429903	1	1	176	0	1	0	0	0	0	0	0	0	4293	957	33	4		4	DBX2	12	45429903	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	1652611	45429903	88421992	213	143440											
KRT86	3892	broad.mit.edu	37	chr12	52647343	52647343	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aataggtaccttgcatccctCcaactgccatgtctagcagg	8	13	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52647343	T	T	52647343	1	4	176	0	1	0	0	0	0	0	0	0	8571	870	30	4		4	KRT86	12	52647343	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	7217440	52647343	81204552	214	143441											
KRT74	121391	broad.mit.edu	37	chr12	52967174	52967174	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccttctggatctcagggtCcagctccacgttgagggggg	14	12	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52967174	T	T	52967174	3	4	176	1	0	0	0	0	1	0	0	0	8558	855	30	4	1237	4	KRT74	12	52967174	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	319831	52967174	80884721	215	143442											
BAZ2A	11176	broad.mit.edu	37	chr12	56999683	56999683	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatcatctgctgcctctgCcgttcctccaagcgcctctg	8	16	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	56999683	T	T	56999683	2	4	176	1	0	0	0	0	0	0	0	1	1336	726	26	4		4	BAZ2A	12	56999683	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	4032509	56999683	76852212	216	143443											
STAT6	6778	broad.mit.edu	37	chr12	57496712	57496712	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagagacagggcctgaagaGggtgaggacaggggtttctt	18	6	1	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	57496712	C	C	57496712	1	2	176	0	1	0	0	0	0	0	0	0	15388	1015	35	4		4	STAT6	12	57496712	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	497029	57496712	76355183	217	143444											
SRGAP1	57522	broad.mit.edu	37	chr12	64521497	64521497	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accgtcatcctgacggctatTtagccaggtaagtagagcct	10	11	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	64521497	A	A	64521497	3	1	176	1	0	0	0	0	1	0	0	0	15263	1838	64	5	2611	5	SRGAP1	12	64521497	Missense_Mutation	SNP	T	TCGA-55-1594-01A-01D-1040-01	7024785	64521497	69330398	218	143445											
ACSS3	79611	broad.mit.edu	37	chr12	81648824	81648824	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaatgaaatgtgaattgtAaaacttggcctaaacaaatc	6	6	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	81648824	G	G	81648824	1	3	176	0	1	0	0	0	0	0	0	0	190	377	13	5		5	ACSS3	12	81648824	3'UTR	SNP	A	TCGA-55-1594-01A-01D-1040-01	17127327	81648824	52203071	219	143446											
SLC6A15	55117	broad.mit.edu	37	chr12	85266387	85266387	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggcttactaactttattTagctcttcttcaattttaca	3	9	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	85266387	A	A	85266387	2	1	176	1	0	0	0	0	0	0	0	1	14792	1741	61	5		5	SLC6A15	12	85266387	Silent	SNP	T	TCGA-55-1594-01A-01D-1040-01	3617563	85266387	48585508	220	143447											
ANO4	121601	broad.mit.edu	37	chr12	101462075	101462075	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctgcagattccgcctGctcctacgaaggctgacttc	9	15	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	101462075	A	A	101462075	1	1	176	0	1	0	0	0	0	0	0	0	699	1334	46	4		4	ANO4	12	101462075	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	16195688	101462075	32389820	221	143448											
VPS33A	65082	broad.mit.edu	37	chr12	122748723	122748723	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaggccaaagggtccagtTaggtattcatcccaaactat	8	10	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	122748723	A	A	122748723	2	1	176	1	0	0	0	0	0	0	0	1	17328	1741	61	5		5	VPS33A	12	122748723	Silent	SNP	T	TCGA-55-1594-01A-01D-1040-01	21286648	122748723	11103172	222	143449											
CLIP1	6249	broad.mit.edu	37	chr12	122849279	122849279	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttttctaacagaaatgtTcctgcttcgcctttcggccg	7	11	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	122849279	C	C	122849279	1	2	176	0	1	0	0	0	0	0	0	0	3564	1798	62	5		5	CLIP1	12	122849279	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	100556	122849279	11002616	223	143450											
ZMYM2	7750	broad.mit.edu	37	chr13	20608525	20608525	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaaatttctctggcgttaaGagacctttctgtagtgaagg	11	6	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	20608525	C	C	20608525	3	2	176	1	0	0	0	0	1	0	0	0	17826	933	33	4	2134	4	ZMYM2	13	20608525	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01		20608525	94561353	224	143451											
LATS2	26524	broad.mit.edu	37	chr13	21557918	21557918	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtagaggatcttccgcatctGctcctgctcagcttcacaga	9	13	4	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	21557918	C	C	21557918	3	2	176	1	0	0	0	0	1	0	0	0	8719	1328	46	4	1355	4	LATS2	13	21557918	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	949393	21557918	93611960	225	143452											
FGF9	2254	broad.mit.edu	37	chr13	22255205	22255205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaatttatcagtatagCagtgggcctggtcagcattc	11	8	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	22255205	A	A	22255205	3	1	176	1	0	0	0	0	1	0	0	0	5916	710	25	3	308	3	FGF9	13	22255205	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	697287	22255205	92914673	226	143453											
RNF17	56163	broad.mit.edu	37	chr13	25338251	25338251	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccggcccactgtttggctAtctgcaggggctggcctcca	12	15	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	25338251	G	G	25338251	1	3	176	0	1	0	0	0	0	0	0	0	13572	464	16	5		5	RNF17	13	25338251	5'Flank	SNP	A	TCGA-55-1594-01A-01D-1040-01	3083046	25338251	89831627	227	143454											
ATP7B	540	broad.mit.edu	37	chr13	52549430	52549430	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatatcccaagggtagaaGaacataacatacacagaaag	7	7	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52549430	A	A	52549430	1	1	176	0	1	0	0	0	0	0	0	0	1195	957	33	4		4	ATP7B	13	52549430	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	27211179	52549430	62620448	228	143455											
THSD1	55901	broad.mit.edu	37	chr13	52972446	52972446	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagggtctcatgctgtcaCcgaggctagagtgcagtggc	15	10	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52972446	A	A	52972446	1	1	176	0	1	0	0	0	0	0	0	0	16000	522	18	3		3	THSD1	13	52972446	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	423016	52972446	62197432	229	143456											
COMMD6	170622	broad.mit.edu	37	chr13	76104110	76104110	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacaaattaatgtctcttgCatatactactagtaaacgta	5	7	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	76104110	G	G	76104110	1	3	176	0	1	0	0	0	0	0	0	0	3752	725	25	4		4	COMMD6	13	76104110	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	23131664	76104110	39065768	230	143457											
MYCBP2	23077	broad.mit.edu	37	chr13	77847609	77847609	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatataaatatgaaatacctGaatagtttggcaagcatggc	9	5	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	77847609	C	C	77847609	3	2	176	1	0	0	0	0	1	0	0	0	10112	1299	45	4	13409	4	MYCBP2	13	77847609	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	1743499	77847609	37322269	231	143458											
SLITRK5	26050	broad.mit.edu	37	chr13	88328774	88328774	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttggagtgtcccaccgcGtgctcttgcaacctgcagat	10	14	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	88328774	T	T	88328774	2	4	176	1	0	0	0	0	0	0	0	1	14860	1132	40	3		3	SLITRK5	13	88328774	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	10481165	88328774	26841104	232	143459											
GPC5	2262	broad.mit.edu	37	chr13	93518680	93518680	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtggtgatgttacttccCgggatttggtaactgaactc	12	7	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	93518680	T	T	93518680	2	4	176	1	0	0	0	0	0	0	0	1	6666	639	23	4		4	GPC5	13	93518680	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	5189906	93518680	21651198	233	143460											
ABCC4	10257	broad.mit.edu	37	chr13	95696788	95696788	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accttcaagtcccttctctcGagagatataacttaagtgga	7	10	2	1	rs144410539	by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	95696788	C	C	95696788	1	2	176	0	1	0	0	0	0	0	0	0	55	1073	37	4		4	ABCC4	13	95696788	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	2178108	95696788	19473090	234	143461											
FGF14	2259	broad.mit.edu	37	chr13	102670571	102670571	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagttagacagggtgtgcCagttccttgacttgtgggca	13	7	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	102670571	G	G	102670571	1	3	176	0	1	0	0	0	0	0	0	0	5900	609	21	4		4	FGF14	13	102670571	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	6973783	102670571	12499307	235	143462											
SRP54	6729	broad.mit.edu	37	chr14	35470094	35470094	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttcttagagtttctTaactgattttctcctcccca	3	11	4	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	35470094	G	G	35470094	1	3	176	0	1	0	0	0	0	0	0	0	15273	1769	61	5		5	SRP54	14	35470094	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01		35470094	71879446	236	143463											
MIPOL1	145282	broad.mit.edu	37	chr14	37754801	37754802	+	Intron	INS	-	T	T													ctttttctttttttcttttcINStttttttttttttgagacgg							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37754802	T	T	37754801	6	5	176	0	1	1	1	0	0	0	0	0	9686	928	32	0		0	MIPOL1	14	37754801	Intron	INS	-	TCGA-55-1594-01A-01D-1040-01	2284707	37754801	69594739	237	143464											
SMOC1	64093	broad.mit.edu	37	chr14	70352019	70352019	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaatttgtattatttTaattatttttatgtacagaa	5	1	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	70352019	C	C	70352019	1	2	176	0	1	0	0	0	0	0	0	0	14915	1769	61	5		5	SMOC1	14	70352019	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	32597218	70352019	36997521	238	143465											
C14orf159	80017	broad.mit.edu	37	chr14	91691111	91691111	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatggaggtggatgggctGcccttccacaacacccacgc	13	14	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	91691111	T	T	91691111	2	4	176	1	0	0	0	0	0	0	0	1	1768	1306	46	3		3	C14orf159	14	91691111	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	21339092	91691111	15658429	239	143466											
RIN3	79890	broad.mit.edu	37	chr14	93118640	93118640	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagctcagcctgcctcccCaagggacctcagacggccct	9	19	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	93118640	T	T	93118640	4	4	176	1	0	0	0	0	0	1	0	0	13484	595	21	4	1268	4	RIN3	14	93118640	Nonsense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1427529	93118640	14230900	240	143467											
MTA1	9112	broad.mit.edu	37	chr14	105916554	105916554	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agctcccgccctgggcccctCgggctgccctcgcctttcca	10	21	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	105916554	T	T	105916554	1	4	176	0	1	0	0	0	0	0	0	0	10002	899	31	4		4	MTA1	14	105916554	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	12797914	105916554	1432986	241	143468											
OCA2	4948	broad.mit.edu	37	chr15	28202874	28202874	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccagacgtgaatctcgtgCttcagttctgcagagaaagg	12	10	3	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	28202874	A	A	28202874	3	1	176	1	0	0	0	0	1	0	0	0	10910	796	28	3	908	3	OCA2	15	28202874	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01		28202874	74328518	242	143469											
OCA2	4948	broad.mit.edu	37	chr15	28211923	28211923	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaccaggagaacaaggcAaatcccaatgaacatgtgtg	11	9	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	28211923	T	T	28211923	3	4	176	1	0	0	0	0	1	0	0	0	10910	130	5	5	1007	5	OCA2	15	28211923	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	9049	28211923	74319469	243	143470											
RYR3	6263	broad.mit.edu	37	chr15	33822772	33822772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacgggcatgtgctgacctTattcttcctcattcccacag	7	14	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	33822772	C	C	33822772	1	2	176	0	1	0	0	0	0	0	0	0	13881	1769	61	5		5	RYR3	15	33822772	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	5610849	33822772	68708620	244	143471											
DLL4	54567	broad.mit.edu	37	chr15	41222861	41222861	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcgaagcttggcacgcgccAggagacgacctgcggccagg	15	13	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	41222861	T	T	41222861	2	4	176	1	0	0	0	0	0	0	0	1	4608	175	7	5		5	DLL4	15	41222861	Silent	SNP	A	TCGA-55-1594-01A-01D-1040-01	7400089	41222861	61308531	245	143472											
CAPN3	825	broad.mit.edu	37	chr15	42702827	42702827	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagaccagtccggcaccatCaacagctacgagatgcgaaa	9	13	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	42702827	G	G	42702827	3	3	176	1	0	0	0	0	1	0	0	0	2654	816	29	4	2360	4	CAPN3	15	42702827	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1479966	42702827	59828565	246	143473											
CDAN1	146059	broad.mit.edu	37	chr15	43025477	43025477	+	Intron	DEL	T	-	-													tccgtagcccacccaccaccTtttttttttttggagatgga							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	43025477	-	-	43025477	6	5	176	0	1	1	0	1	0	0	0	0	3084	1624	56	0		0	CDAN1	15	43025477	Intron	DEL	T	TCGA-55-1594-01A-01D-1040-01	322650	43025477	59505915	247	143474											
CTDSPL2	51496	broad.mit.edu	37	chr15	44806943	44806943	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accatgtataatgattacttCttttcccctgaatttataga	4	8	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	44806943	G	G	44806943	1	3	176	0	1	0	0	0	0	0	0	0	4040	928	32	4		4	CTDSPL2	15	44806943	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1781466	44806943	57724449	248	143475											
B2M	567	broad.mit.edu	37	chr15	45003662	45003662	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acggtccctgcgggccttgtCctgattggctgggcacgcgt	15	13	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	45003662	T	T	45003662	1	4	176	0	1	0	0	0	0	0	0	0	1249	870	30	4		4	B2M	15	45003662	5'Flank	SNP	C	TCGA-55-1594-01A-01D-1040-01	196719	45003662	57527730	249	143476											
CEP152	22995	broad.mit.edu	37	chr15	49048414	49048414	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtaattctgtctccttctGaagaagtagttcagtttttt	7	6	4	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	49048414	A	A	49048414	4	1	176	1	0	0	0	0	0	1	0	0	3278	1299	45	4	1961	4	CEP152	15	49048414	Nonsense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	4044752	49048414	53482978	250	143477											
USP8	9101	broad.mit.edu	37	chr15	50731407	50731407	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcgctagtttgattgaatCaaatattaatttttagttcg	6	5	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	50731407	T	T	50731407	1	4	176	0	1	0	0	0	0	0	0	0	17216	841	29	4		4	USP8	15	50731407	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1682993	50731407	51799985	251	143478											
MYO5C	55930	broad.mit.edu	37	chr15	52571636	52571636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtataaacataaaacaAccaggaggctctagacagca	7	10	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52571636	T	T	52571636	1	4	176	0	1	0	0	0	0	0	0	0	10174	58	2	5		5	MYO5C	15	52571636	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	1840229	52571636	49959756	252	143479											
UNC13C	440279	broad.mit.edu	37	chr15	54305729	54305729	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaaaatcctggggaataaGaagtaagtctttggacagaa	11	4	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	54305729	A	A	54305729	3	1	176	1	0	0	0	0	1	0	0	0	17112	942	33	4	631	4	UNC13C	15	54305729	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	1734093	54305729	48225663	253	143480											
LACTB	114294	broad.mit.edu	37	chr15	63418911	63418911	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagattttaatcctttacaTgtccagtgttaagtaactta	5	6	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	63418911	A	A	63418911	1	1	176	0	1	0	0	0	0	0	0	0	8669	1479	51	5		5	LACTB	15	63418911	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	9113182	63418911	39112481	254	143481											
HERC1	8925	broad.mit.edu	37	chr15	64045267	64045267	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttatacactctgttggtatCaccatgaccaagtttaccta	5	10	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	64045267	A	A	64045267	3	1	176	1	0	0	0	0	1	0	0	0	7124	826	29	3	13077	3	HERC1	15	64045267	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	626356	64045267	38486125	255	143482											
RPL4	6124	broad.mit.edu	37	chr15	66797165	66797165	+	5'UTR	DEL	G	-	-													agccacgctcctctcagcccGgctgctgccacaggaaaagg							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	66797165	-	-	66797165	6	5	176	0	1	1	0	1	0	0	0	0	13706	1131	39	0		0	RPL4	15	66797165	5'UTR	DEL	G	TCGA-55-1594-01A-01D-1040-01	2751898	66797165	35734227	256	143483											
LBXCOR1	390598	broad.mit.edu	37	chr15	68119495	68119495	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcggggggcccgggagcCagccacttgcccccgggggc	20	15	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	68119495	G	G	68119495	2	3	176	1	0	0	0	0	0	0	0	1	8727	581	21	4		4	LBXCOR1	15	68119495	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	1322330	68119495	34411897	257	143484											
RPP25	54913	broad.mit.edu	37	chr15	75248342	75248342	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttcaggccgtctgatcctCgtccgcaacccctggctcgg	11	16	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	75248342	T	T	75248342	3	4	176	1	0	0	0	0	1	0	0	0	13722	893	31	4	20	4	RPP25	15	75248342	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	7128847	75248342	27283050	258	143485											
C15orf27	123591	broad.mit.edu	37	chr15	76449108	76449108	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttctccagtgtgagtagCaagagagatacatatgccaa	10	8	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	76449108	G	G	76449108	1	3	176	0	1	0	0	0	0	0	0	0	1801	725	25	4		4	C15orf27	15	76449108	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1200766	76449108	26082284	259	143486											
TSPAN3	10099	broad.mit.edu	37	chr15	77348204	77348204	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagagcaggatgatgacaAactgtaagaaaacatggttt	10	6	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	77348204	T	T	77348204	3	4	176	1	0	0	0	0	1	0	0	0	16770	28	1	5	524	5	TSPAN3	15	77348204	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	899096	77348204	25183188	260	143487											
KLHL25	64410	broad.mit.edu	37	chr15	86311732	86311732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttggcactcaccactgcgGcattgctgacgccatcccgc	10	17	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	86311732	T	T	86311732	3	4	176	1	0	0	0	0	1	0	0	0	8451	1203	42	3	463	3	KLHL25	15	86311732	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	8963528	86311732	16219660	261	143488											
FANCI	55215	broad.mit.edu	37	chr15	89801887	89801887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgagtgtttaggtcattgGggtaaaagactgttgccaga	13	4	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	89801887	T	T	89801887	1	4	176	0	1	0	0	0	0	0	0	0	5726	1247	43	2		2	FANCI	15	89801887	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	3490155	89801887	12729505	262	143489											
TTLL13	440307	broad.mit.edu	37	chr15	90800274	90800274	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tattttacatggttattgtgGaaattcaattagctatgtgt	8	3	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	90800274	A	A	90800274	1	1	176	0	1	0	0	0	0	0	0	0	16852	1189	41	4		4	TTLL13	15	90800274	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	998387	90800274	11731118	263	143490											
CLEC16A	23274	broad.mit.edu	37	chr16	11062910	11062910	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgtgtttaatcccagcaAcccagaggcttacctgattc	8	11	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	11062910	G	G	11062910	1	3	176	0	1	0	0	0	0	0	0	0	3532	58	2	5		5	CLEC16A	16	11062910	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01		11062910	79291843	264	143491											
KIAA0430	9665	broad.mit.edu	37	chr16	15705448	15705448	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcttttcatcaactcaCcagtgataagcctgtgagaa	7	10	4	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	15705448	A	A	15705448	5	1	176	1	0	0	0	0	0	0	1	0	8247	521	18	3	1650	3	KIAA0430	16	15705448	Splice_Site	SNP	C	TCGA-55-1594-01A-01D-1040-01	4642538	15705448	74649305	265	143492											
ABCC1	4363	broad.mit.edu	37	chr16	16177395	16177397	+	In_Frame_Del	DEL	AGA	-	-													ggatcggacagagattggcgAgaaggtcagtataggttgga							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	16177397	-	-	16177395	7	5	176	1	0	1	0	1	0	0	0	0	49	304	11	0	2354	0	ABCC1	16	16177395	In_Frame_Del	DEL	AGA	TCGA-55-1594-01A-01D-1040-01	471947	16177395	74177358	266	143493											
ITPRIPL2	162073	broad.mit.edu	37	chr16	19126881	19126881	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttggctgcaggaacgggcAgctccaggtgcctgctacct	14	12	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	19126881	T	T	19126881	2	4	176	1	0	0	0	0	0	0	0	1	7995	175	7	5		5	ITPRIPL2	16	19126881	Silent	SNP	A	TCGA-55-1594-01A-01D-1040-01	2949486	19126881	71227872	267	143494											
SH2B1	25970	broad.mit.edu	37	chr16	28878061	28878061	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggtaggggactggtcagtGatggaacgtcccctggggaa	17	7	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	28878061	C	C	28878061	3	2	176	1	0	0	0	0	1	0	0	0	14340	1290	45	4	648	4	SH2B1	16	28878061	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	9751180	28878061	61476692	268	143495											
SEZ6L2	26470	broad.mit.edu	37	chr16	29908968	29908968	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgactgtcacctaatcattCtgtctctgtctctctggttc	6	13	6	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	29908968	G	G	29908968	1	3	176	0	1	0	0	0	0	0	0	0	14257	928	32	4		4	SEZ6L2	16	29908968	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1030907	29908968	60445785	269	143496											
ITGAD	3681	broad.mit.edu	37	chr16	31408683	31408683	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catggttgtgtctccagactCgtggtgggagcacccctgga	14	11	1	1	rs150915570	byFrequency	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31408683	T	T	31408683	2	4	176	1	0	0	0	0	0	0	0	1	7954	871	31	4		4	ITGAD	16	31408683	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	1499715	31408683	58946070	270	143497											
CBLN1	869	broad.mit.edu	37	chr16	49314745	49314745	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagtacatgcagccgccacTtctgcctaccacctccggac	8	17	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	49314745	A	A	49314745	1	1	176	0	1	0	0	0	0	0	0	0	2730	1624	56	5		5	CBLN1	16	49314745	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	17906062	49314745	41040008	271	143498											
SLC6A2	6530	broad.mit.edu	37	chr16	55728142	55728142	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggcaagccaaattttcttCttgtgaaccatcctgggcat	9	10	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	55728142	T	T	55728142	1	4	176	0	1	0	0	0	0	0	0	0	14797	928	32	4		4	SLC6A2	16	55728142	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	6413397	55728142	34626611	272	143499											
KIAA0174	9798	broad.mit.edu	37	chr16	71949406	71949406	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaaaaaatgtgaattagatCatgtcattttcctgtattag	7	4	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	71949406	T	T	71949406	1	4	176	0	1	0	0	0	0	0	0	0	8228	841	29	4		4	KIAA0174	16	71949406	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	16221264	71949406	18405347	273	143500											
CLEC18B	497190	broad.mit.edu	37	chr16	74443829	74443829	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacttgagaggtacacctgGgaacccaacaaggcccagac	10	14	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74443829	A	A	74443829	1	1	176	0	1	0	0	0	0	0	0	0	3535	1247	43	4		4	CLEC18B	16	74443829	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	2494423	74443829	15910924	274	143501											
ATMIN	23300	broad.mit.edu	37	chr16	81069732	81069732	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcggaccaacatcctgtGcaccgtgcgcggctgcggca	14	15	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	81069732	T	T	81069732	3	4	176	1	0	0	0	0	1	0	0	0	1114	1319	46	3	259	3	ATMIN	16	81069732	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	6625903	81069732	9285021	275	143502											
ASGR1	432	broad.mit.edu	37	chr17	7081933	7081933	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaagactgaggctggggctGaggtgggggctcaccaggac	18	9	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	7081933	C	C	7081933	1	2	176	0	1	0	0	0	0	0	0	0	1043	1305	45	4		4	ASGR1	17	7081933	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01		7081933	74113277	276	143503											
TP53	7157	broad.mit.edu	37	chr17	7578433	7578433	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caacctccgtcatgtgctgtGactgcttgtagatggccatg	11	11	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578433	C	C	7578433	4	2	176	1	0	0	0	0	0	1	0	0	16505	1294	45	4	801	4	TP53	17	7578433	Nonsense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	496500	7578433	73616777	277	143504											
MYH13	8735	broad.mit.edu	37	chr17	10260909	10260909	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaaagtgtatcacaatattCcaggtgggtagattgatctc	9	7	3	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10260909	T	T	10260909	1	4	176	0	1	0	0	0	0	0	0	0	10126	870	30	4		4	MYH13	17	10260909	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	2682476	10260909	70934301	278	143505											
MYH4	4622	broad.mit.edu	37	chr17	10362503	10362503	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttgagaacagggagtgtGattaagcacagggaggcaag	15	5	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10362503	T	T	10362503	1	4	176	0	1	0	0	0	0	0	0	0	10131	1305	45	3		3	MYH4	17	10362503	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	101594	10362503	70832707	279	143506											
MYH2	4620	broad.mit.edu	37	chr17	10450590	10450590	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacatggacagcggcctTccccagctttggatgggaaa	12	11	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	10450590	A	A	10450590	1	1	176	0	1	0	0	0	0	0	0	0	10129	1798	62	5		5	MYH2	17	10450590	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	88087	10450590	70744620	280	143507											
MYO18A	399687	broad.mit.edu	37	chr17	27424663	27424663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaatcccctgcatttattGgcacctctgccttctcatct	4	15	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	27424663	A	A	27424663	1	1	176	0	1	0	0	0	0	0	0	0	10159	1363	47	4		4	MYO18A	17	27424663	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	16974073	27424663	53770547	281	143508											
SUZ12	23512	broad.mit.edu	37	chr17	30310289	30310289	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcatttaacggaaggtatCattctttttttttttttttt	6	4	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	30310289	G	G	30310289	1	3	176	0	1	0	0	0	0	0	0	0	15534	841	29	4		4	SUZ12	17	30310289	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	2885626	30310289	50884921	282	143509											
MPP2	4355	broad.mit.edu	37	chr17	41955403	41955403	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcccacaactcaccccCactgtcagaaggagctacag	8	16	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	41955403	A	A	41955403	1	1	176	0	1	0	0	0	0	0	0	0	9828	609	21	2		2	MPP2	17	41955403	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	11645114	41955403	39239807	283	143510											
HOXB3	3213	broad.mit.edu	37	chr17	46628504	46628504	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccgctgccaccactgcctCcgccgccgccgccaccgccg	9	26	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46628504	T	T	46628504	3	4	176	1	0	0	0	0	1	0	0	0	7369	855	30	4	811	4	HOXB3	17	46628504	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	4673101	46628504	34566706	284	143511											
ACSF2	80221	broad.mit.edu	37	chr17	48543288	48543288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatgagtgaatgagtaaGcacccgagtgccagaggggc	16	8	1	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	48543288	T	T	48543288	1	4	176	0	1	0	0	0	0	0	0	0	175	986	34	3		3	ACSF2	17	48543288	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	1914784	48543288	32651922	285	143512											
INTS2	57508	broad.mit.edu	37	chr17	59988888	59988888	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atttaaccctcacctgctgtCcatttcggataaaagttcca	5	12	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	59988888	G	G	59988888	3	3	176	1	0	0	0	0	1	0	0	0	7848	855	30	4	2719	4	INTS2	17	59988888	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	11445600	59988888	21206322	286	143513											
CCDC46	201134	broad.mit.edu	37	chr17	64092698	64092698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtccaatggatttctcaCataccagagaaactgggata	8	8	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	64092698	A	A	64092698	1	1	176	0	1	0	0	0	0	0	0	0	2845	493	17	3		3	CCDC46	17	64092698	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	4103810	64092698	17102512	287	143514											
CACNG4	27092	broad.mit.edu	37	chr17	65014202	65014202	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctctgtctgtccccaGgacctgcacagaggctcaca	8	15	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	65014202	A	A	65014202	1	1	176	0	1	0	0	0	0	0	0	0	2585	1015	35	4		4	CACNG4	17	65014202	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	921504	65014202	16181008	288	143515											
HELZ	9931	broad.mit.edu	37	chr17	65147069	65147069	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacaaaaacagtcagtgagcCagatttggcccacacactgt	8	11	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	65147069	G	G	65147069	1	3	176	0	1	0	0	0	0	0	0	0	7116	609	21	4		4	HELZ	17	65147069	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	132867	65147069	16048141	289	143516											
ABCA8	10351	broad.mit.edu	37	chr17	66899349	66899349	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgctgcctaattcatcaTatctttgtgtttttttgctt	5	8	4	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	66899349	C	C	66899349	1	2	176	0	1	0	0	0	0	0	0	0	38	1421	49	5		5	ABCA8	17	66899349	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	1752280	66899349	14295861	290	143517											
ABCA8	10351	broad.mit.edu	37	chr17	66933233	66933233	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttaatactttcctcatCtggcagtcccaagacctctt	4	13	4	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	66933233	G	G	66933233	3	3	176	1	0	0	0	0	1	0	0	0	38	913	32	4	4560	4	ABCA8	17	66933233	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	33884	66933233	14261977	291	143518											
DNAI2	64446	broad.mit.edu	37	chr17	72295931	72295931	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagccaccgagaccctgtgTatggcaccatctggctgcag	11	15	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	72295931	G	G	72295931	3	3	176	1	0	0	0	0	1	0	0	0	4650	1638	57	5	821	5	DNAI2	17	72295931	Missense_Mutation	SNP	T	TCGA-55-1594-01A-01D-1040-01	5362698	72295931	8899279	292	143519											
SAP30BP	29115	broad.mit.edu	37	chr17	73689542	73689542	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taatacagaagcagaaaagcGagacccccaggaactcgtgg	11	10	0	3	rs150596591	byFrequency	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	73689542	C	C	73689542	3	2	176	1	0	0	0	0	1	0	0	0	13946	1058	37	4	301	4	SAP30BP	17	73689542	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	1393611	73689542	7505668	293	143520											
LAMA3	3909	broad.mit.edu	37	chr18	21513990	21513990	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattggggaagggggtgagAgctcaccagtccataaagtg	15	6	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	21513990	C	C	21513990	1	2	176	0	1	0	0	0	0	0	0	0	8679	319	11	5		5	LAMA3	18	21513990	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01		21513990	56563258	294	143521											
SERPINB12	89777	broad.mit.edu	37	chr18	61231205	61231205	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatattctctgggatctttTtttaggtaaaatcaaggaac	9	5	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	61231205	C	C	61231205	1	2	176	0	1	0	0	0	0	0	0	0	14212	1856	64	5		5	SERPINB12	18	61231205	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	39717215	61231205	16846043	295	143522											
PCSK4	54760	broad.mit.edu	37	chr19	1483662	1483662	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctcacgtggggcggctctGgacccggacggcgcacttcc	15	15	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1483662	A	A	1483662	4	1	176	1	0	0	0	0	0	1	0	0	11696	1357	47	4	909	4	PCSK4	19	1483662	Nonsense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01		1483662	57645321	296	143523											
CCDC94	55702	broad.mit.edu	37	chr19	4262230	4262230	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgagacggagtctcgctCtgtcgcctaggctggagtgc	14	10	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	4262230	T	T	4262230	1	4	176	0	1	0	0	0	0	0	0	0	2901	928	32	4		4	CCDC94	19	4262230	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	2778568	4262230	54866753	297	143524											
C3	718	broad.mit.edu	37	chr19	6707345	6707345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggccggcagcaggagggaCgcgggacggaccccagggag	22	11	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6707345	T	T	6707345	1	4	176	0	1	0	0	0	0	0	0	0	2226	551	19	4		4	C3	19	6707345	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	2445115	6707345	52421638	298	143525											
DNMT1	1786	broad.mit.edu	37	chr19	10244836	10244836	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggccagcaactgcccccaCatgtacccccagagggcagt	11	16	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10244836	T	T	10244836	1	4	176	0	1	0	0	0	0	0	0	0	4715	493	17	4		4	DNMT1	19	10244836	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	3537491	10244836	48884147	299	143526											
RTBDN	83546	broad.mit.edu	37	chr19	12939476	12939476	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcgtctcctaccaggcCtggcagagctcctcgcagag	11	18	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	12939476	T	T	12939476	2	4	176	1	0	0	0	0	0	0	0	1	13828	680	24	4		4	RTBDN	19	12939476	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	2694640	12939476	46189507	300	143527											
CACNA1A	773	broad.mit.edu	37	chr19	13365804	13365804	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatctcagaggtgatccaGagtgtggtctgtctgggaaa	13	6	3	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	13365804	T	T	13365804	1	4	176	0	1	0	0	0	0	0	0	0	2564	957	33	3		3	CACNA1A	19	13365804	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	426328	13365804	45763179	301	143528											
CYP4F8	11283	broad.mit.edu	37	chr19	15732950	15732950	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcatgcctctgggggagTccatcctggtggttggggtt	18	8	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	15732950	C	C	15732950	1	2	176	0	1	0	0	0	0	0	0	0	4224	1682	58	5		5	CYP4F8	19	15732950	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01	2367146	15732950	43396033	302	143529											
SLC27A1	376497	broad.mit.edu	37	chr19	17612097	17612097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggagtggagggtaaggCagggatggcggccgtcgcag	20	8	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17612097	A	A	17612097	3	1	176	1	0	0	0	0	1	0	0	0	14639	710	25	3	1694	3	SLC27A1	19	17612097	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1879147	17612097	41516886	303	143530											
UNC13A	23025	broad.mit.edu	37	chr19	17728417	17728417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattccgccccatccatgacGtcacaggggagtgagccaat	10	13	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17728417	A	A	17728417	1	1	176	0	1	0	0	0	0	0	0	0	17110	1160	40	4		4	UNC13A	19	17728417	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	116320	17728417	41400566	304	143531											
ZNF208	7757	broad.mit.edu	37	chr19	22154332	22154332	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacattcttcacatttgtaGggtttctctacagtatgaat	6	9	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	22154332	T	T	22154332	2	4	176	1	0	0	0	0	0	0	0	1	17892	987	35	2		2	ZNF208	19	22154332	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	4425915	22154332	36974651	305	143532											
ZNF676	163223	broad.mit.edu	37	chr19	22375756	22375756	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcttcccaaatgactttaagGactggcttcctcattgactt	7	11	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	22375756	A	A	22375756	1	1	176	0	1	0	0	0	0	0	0	0	18210	1189	41	4		4	ZNF676	19	22375756	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	221424	22375756	36753227	306	143533											
ZNF536	9745	broad.mit.edu	37	chr19	30934318	30934318	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataattggcatttaataattCatttttttattattgttttt	3	2	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934318	T	T	30934318	1	4	176	0	1	0	0	0	0	0	0	0	18101	841	29	4		4	ZNF536	19	30934318	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	8558562	30934318	28194665	307	143534											
ZNF566	84924	broad.mit.edu	37	chr19	36967453	36967453	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggaaacagtatctcacctGagccatggctctgatatttg	9	9	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	36967453	A	A	36967453	4	1	176	1	0	0	0	0	0	1	0	0	18124	1299	45	4	1268	4	ZNF566	19	36967453	Nonsense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	6033135	36967453	22161530	308	143535											
GGN	199720	broad.mit.edu	37	chr19	38876616	38876616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaggcctggaggccccGggcgcatgggctcgccattg	16	15	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	38876616	T	T	38876616	3	4	176	1	0	0	0	0	1	0	0	0	6422	1116	39	1	680	1	GGN	19	38876616	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	1909163	38876616	20252367	309	143536											
IL28B	282617	broad.mit.edu	37	chr19	39734751	39734751	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggtggcctccagaaccttcAgcgtcagggccagctcagcc	12	16	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	39734751	G	G	39734751	3	3	176	1	0	0	0	0	1	0	0	0	7753	188	7	5	296	5	IL28B	19	39734751	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	858135	39734751	19394232	310	143537											
CADM4	199731	broad.mit.edu	37	chr19	44131254	44131256	+	Intron	DEL	AGG	-	-													agccatggtctgaaagtctcAggagaagagagaagcagaga					rs145326531	by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	44131256	-	-	44131254	6	5	176	0	1	1	0	1	0	0	0	0	2595	203	7	0		0	CADM4	19	44131254	Intron	DEL	AGG	TCGA-55-1594-01A-01D-1040-01	4396503	44131254	14997729	311	143538											
FBXO46	23403	broad.mit.edu	37	chr19	46216187	46216187	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggtggtcggtcgtgggtaGctctgcagggccagggctgc	21	9	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	46216187	C	C	46216187	3	2	176	1	0	0	0	0	1	0	0	0	5812	962	34	4	1248	4	FBXO46	19	46216187	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	2084933	46216187	12912796	312	143539											
RSPH6A	81492	broad.mit.edu	37	chr19	46305469	46305469	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttctcttcctcctccccCaggtcctcctcctcctctgt	4	22	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46305469	A	A	46305469	2	1	176	1	0	0	0	0	0	0	0	1	13818	581	21	2		2	RSPH6A	19	46305469	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	89282	46305469	12823514	313	143540											
STRN4	29888	broad.mit.edu	37	chr19	47228395	47228395	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagggctgtgctgagtaCcagctgccagggcatgtgaa	15	9	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	47228395	G	G	47228395	1	3	176	0	1	0	0	0	0	0	0	0	15449	522	18	4		4	STRN4	19	47228395	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	922926	47228395	11900588	314	143541											
ZC3H4	23211	broad.mit.edu	37	chr19	47593135	47593136	+	Intron	INS	-	A	A													tatcccaaccctaagtgaccINSaaacttgaggttctgtgaga							TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	47593136	A	A	47593135	6	5	176	0	1	1	1	0	0	0	0	0	17696	609	21	0		0	ZC3H4	19	47593135	Intron	INS	-	TCGA-55-1594-01A-01D-1040-01	364740	47593135	11535848	315	143542											
SLC6A16	28968	broad.mit.edu	37	chr19	49812634	49812634	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaagaaaccgacaatgAtgaaacaggggagcagtacc	13	7	0	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	49812634	C	C	49812634	3	2	176	1	0	0	0	0	1	0	0	0	14793	333	12	5	1327	5	SLC6A16	19	49812634	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	2219499	49812634	9316349	316	143543											
FUZ	80199	broad.mit.edu	37	chr19	50316081	50316081	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccagctcccagccccatcCtctttccatatgacctggca	6	18	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	50316081	G	G	50316081	1	3	176	0	1	0	0	0	0	0	0	0	6172	696	24	4		4	FUZ	19	50316081	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	503447	50316081	8812902	317	143544											
KLK14	43847	broad.mit.edu	37	chr19	51581323	51581323	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcacaggttggtgtagaCaccggggtagccaggcaggg	17	9	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51581323	T	T	51581323	3	4	176	1	0	0	0	0	1	0	0	0	8473	478	17	4	62	4	KLK14	19	51581323	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1265242	51581323	7547660	318	143545											
ZNF611	81856	broad.mit.edu	37	chr19	53208732	53208732	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgacctatcttatgtgtctCaaggcttgatttacgactga	8	8	2	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	53208732	G	G	53208732	3	3	176	1	0	0	0	0	1	0	0	0	18164	835	29	4	545	4	ZNF611	19	53208732	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1627409	53208732	5920251	319	143546											
ZNF160	90338	broad.mit.edu	37	chr19	53576594	53576594	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgctgagaacaatcttagAagatagaacccactcgctta	7	9	1	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	53576594	C	C	53576594	1	2	176	0	1	0	0	0	0	0	0	0	17865	261	9	5		5	ZNF160	19	53576594	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	367862	53576594	5552389	320	143547											
ZNF160	90338	broad.mit.edu	37	chr19	53589517	53589517	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaggagtatcactttacctGagtaagggccatccctgact	9	12	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	53589517	T	T	53589517	3	4	176	1	0	0	0	0	1	0	0	0	17865	1299	45	3	2459	3	ZNF160	19	53589517	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	12923	53589517	5539466	321	143548											
VSTM1	284415	broad.mit.edu	37	chr19	54545619	54545619	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcgacaaagatggttctGgtgtctggagggggaagagc	18	5	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	54545619	A	A	54545619	2	1	176	1	0	0	0	0	0	0	0	1	17355	1335	47	4		4	VSTM1	19	54545619	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	956102	54545619	4583364	322	143549											
TFPT	29844	broad.mit.edu	37	chr19	54617692	54617692	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataatgcatgctaaatgactGaatatataagctaaatgact	6	5	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	54617692	A	A	54617692	1	1	176	0	1	0	0	0	0	0	0	0	15933	1305	45	4		4	TFPT	19	54617692	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	72073	54617692	4511291	323	143550											
LILRA3	11026	broad.mit.edu	37	chr19	54800125	54800125	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgagaatcaaaacagaggaGaagagacatattcagaggta	11	5	2	5			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	54800125	A	A	54800125	1	1	176	0	1	0	0	0	0	0	0	0	8858	957	33	4		4	LILRA3	19	54800125	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	182433	54800125	4328858	324	143551											
SAPS1	22870	broad.mit.edu	37	chr19	55753421	55753421	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcacaggcagccacagaGcaaggtgccacgggcgggga	18	11	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	55753421	C	C	55753421	1	2	176	0	1	0	0	0	0	0	0	0	13948	986	34	4		4	SAPS1	19	55753421	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	953296	55753421	3375562	325	143552											
A1BG	1	broad.mit.edu	37	chr19	58858216	58858216	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcagccctgggagtccaaaGacattttaaacagagcctct	8	12	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	58858216	C	C	58858216	1	2	176	0	1	0	0	0	0	0	0	0	1	957	33	4		4	A1BG	19	58858216	3'UTR	SNP	G	TCGA-55-1594-01A-01D-1040-01	3104795	58858216	270767	326	143553											
PLCB1	23236	broad.mit.edu	37	chr20	8678179	8678179	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcagctcttagactctTtgttttcctgttattgagga	9	8	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	8678179	C	C	8678179	1	2	176	0	1	0	0	0	0	0	0	0	12122	1856	64	5		5	PLCB1	20	8678179	Intron	SNP	T	TCGA-55-1594-01A-01D-1040-01		8678179	54347341	327	143554											
ZNF133	7692	broad.mit.edu	37	chr20	18297556	18297556	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taagtggtcaaaggacatttGactgtttactttctccacac	7	9	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	18297556	C	C	18297556	1	2	176	0	1	0	0	0	0	0	0	0	17849	1305	45	4		4	ZNF133	20	18297556	3'UTR	SNP	G	TCGA-55-1594-01A-01D-1040-01	9619377	18297556	44727964	328	143555											
C20orf3	57136	broad.mit.edu	37	chr20	24950657	24950657	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagagaaaacgaaagcacCttgttccattttgtgacatc	7	10	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	24950657	T	T	24950657	1	4	176	0	1	0	0	0	0	0	0	0	2131	696	24	4		4	C20orf3	20	24950657	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	6653101	24950657	38074863	329	143556											
TTLL9	164395	broad.mit.edu	37	chr20	30459127	30459127	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttgaggccctgttcacctCtgacctgctagatgaccctg	10	13	2	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	30459127	A	A	30459127	1	1	176	0	1	0	0	0	0	0	0	0	16860	928	32	3		3	TTLL9	20	30459127	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	5508470	30459127	32566393	330	143557											
ROMO1	140823	broad.mit.edu	37	chr20	34288862	34288862	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctacatctgtcccttcccatCaatcccagcccatgtactaa	3	17	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	34288862	G	G	34288862	1	3	176	0	1	0	0	0	0	0	0	0	13633	841	29	4		4	ROMO1	20	34288862	3'UTR	SNP	C	TCGA-55-1594-01A-01D-1040-01	3829735	34288862	28736658	331	143558											
RPN2	6185	broad.mit.edu	37	chr20	35827457	35827457	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccaattctttcttagatctCtatttcaaatgagaccaaag	5	9	4	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	35827457	G	G	35827457	3	3	176	1	0	0	0	0	1	0	0	0	13719	913	32	4	322	4	RPN2	20	35827457	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1538595	35827457	27198063	332	143559											
RPN2	6185	broad.mit.edu	37	chr20	35827584	35827584	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggcatcccaagaagcactCagtgcccttactgctcgtct	8	14	2	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	35827584	G	G	35827584	2	3	176	1	0	0	0	0	0	0	0	1	13719	813	29	4		4	RPN2	20	35827584	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	127	35827584	27197936	333	143560											
SLC32A1	140679	broad.mit.edu	37	chr20	37356290	37356290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccaacgcctgctgcgccCcgcgcttcccaacgctgggc	11	19	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	37356290	A	A	37356290	3	1	176	1	0	0	0	0	1	0	0	0	14679	623	22	2	592	2	SLC32A1	20	37356290	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1528706	37356290	25669230	334	143561											
PTPRT	11122	broad.mit.edu	37	chr20	40944253	40944253	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcatgaggtaggatttgcCccacgggccttagtttttca	12	9	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	40944253	A	A	40944253	1	1	176	0	1	0	0	0	0	0	0	0	12920	638	22	2		2	PTPRT	20	40944253	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	3587963	40944253	22081267	335	143562											
C20orf111	51526	broad.mit.edu	37	chr20	42831602	42831602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaataagaagctcttaccCgtgccaactgtctttagatg	7	11	3	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	42831602	A	A	42831602	3	1	176	1	0	0	0	0	1	0	0	0	2102	666	23	1	696	1	C20orf111	20	42831602	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	1887349	42831602	20193918	336	143563											
PMEPA1	56937	broad.mit.edu	37	chr20	56227472	56227472	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctcggggtcccgaagctgGagggtgcaggggccctggta	19	10	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	56227472	A	A	56227472	2	1	176	1	0	0	0	0	0	0	0	1	12227	1161	41	4		4	PMEPA1	20	56227472	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	13395870	56227472	6798048	337	143564											
CHRNA4	1137	broad.mit.edu	37	chr20	61981432	61981432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcagggtccaggcgagGggtgggggctggctttctca	21	9	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	61981432	T	T	61981432	3	4	176	1	0	0	0	0	1	0	0	0	3416	1232	43	2	560	2	CHRNA4	20	61981432	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	5753960	61981432	1044088	338	143565											
ZNF512B	57473	broad.mit.edu	37	chr20	62596353	62596353	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgagcccccataccttttctCaccactgttccctgacctgg	6	18	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	62596353	T	T	62596353	1	4	176	0	1	0	0	0	0	0	0	0	18084	841	29	4		4	ZNF512B	20	62596353	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	614921	62596353	429167	339	143566											
BAGE2	85319	broad.mit.edu	37	chr21	11085601	11085601	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaccaccactaccaccaCcaccactaccaccaccacca	0	25	0	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11085601	T	T	11085601	1	4	176	0	1	0	0	0	0	0	0	0	1297	522	18	4		4	BAGE2	21	11085601	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01		11085601	37044294	340	143567											
C21orf63	59271	broad.mit.edu	37	chr21	33830052	33830052	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaacttcggagggggacaGtgtgtttggggtgtggttct	18	4	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	33830052	C	C	33830052	1	2	176	0	1	0	0	0	0	0	0	0	2153	1044	36	4		4	C21orf63	21	33830052	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	22744451	33830052	14299843	341	143568											
ADARB1	104	broad.mit.edu	37	chr21	46641940	46641940	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatcccttcacaggttccctCccacttactacgctccaaga	4	17	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46641940	T	T	46641940	3	4	176	1	0	0	0	0	1	0	0	0	282	855	30	4	2092	4	ADARB1	21	46641940	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	12811888	46641940	1487955	342	143569											
CCT8L2	150160	broad.mit.edu	37	chr22	17072821	17072821	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtccccccgggcagcGcgcacaccccaacacgctca	9	21	1	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	17072821	T	T	17072821	3	4	176	1	0	0	0	0	1	0	0	0	2991	1087	38	3	1057	3	CCT8L2	22	17072821	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01		17072821	34231745	343	143570											
ZNF70	7621	broad.mit.edu	37	chr22	24087099	24087099	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggttcctggggggatactttGatgctgaacagggcttgagc	16	7	0	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	24087099	A	A	24087099	4	1	176	1	0	0	0	0	0	1	0	0	18230	1299	45	4	1115	4	ZNF70	22	24087099	Nonsense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	7014278	24087099	27217467	344	143571											
SGSM1	129049	broad.mit.edu	37	chr22	25263006	25263006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggcctctgagcccctcCgcacagtggggtaggcagaa	14	13	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	25263006	T	T	25263006	1	4	176	0	1	0	0	0	0	0	0	0	14335	667	23	4		4	SGSM1	22	25263006	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1175907	25263006	26041560	345	143572											
SEZ6L	23544	broad.mit.edu	37	chr22	26694878	26694878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccagcacaaactggctcCcaggatgtgggtcaggttct	11	13	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	26694878	A	A	26694878	1	1	176	0	1	0	0	0	0	0	0	0	14256	638	22	2		2	SEZ6L	22	26694878	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	1431872	26694878	24609688	346	143573											
SEZ6L	23544	broad.mit.edu	37	chr22	26747039	26747039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tatgtactgcaccgaccccgGagaggtggatcactcgaccc	11	14	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26747039	T	T	26747039	3	4	176	1	0	0	0	0	1	0	0	0	14256	1174	41	3	2475	3	SEZ6L	22	26747039	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	52161	26747039	24557527	347	143574											
MN1	4330	broad.mit.edu	37	chr22	28193194	28193194	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgccgtagctgtcaggggtcGaggtagagttagacatgatg	16	7	1	3			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	28193194	A	A	28193194	3	1	176	1	0	0	0	0	1	0	0	0	9767	1059	37	4	632	4	MN1	22	28193194	Missense_Mutation	SNP	G	TCGA-55-1594-01A-01D-1040-01	1446155	28193194	23111372	348	143575											
OSM	5008	broad.mit.edu	37	chr22	30660800	30660800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtccggagtcccgcccCgggaccacagagctaggaaa	14	13	0	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	30660800	A	A	30660800	1	1	176	0	1	0	0	0	0	0	0	0	11385	667	23	1		1	OSM	22	30660800	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	2467606	30660800	20643766	349	143576											
MORC2	22880	broad.mit.edu	37	chr22	31332411	31332411	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggagggtaaaactgagcctGagggaacaggaaagctactg	15	6	0	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	31332411	C	C	31332411	1	2	176	0	1	0	0	0	0	0	0	0	9796	1305	45	4		4	MORC2	22	31332411	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	671611	31332411	19972155	350	143577											
TIMP3	7078	broad.mit.edu	37	chr22	33255454	33255454	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgatgacaatgaaattaGtgcctgttttcttgcaaatt	8	5	1	4			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	33255454	T	T	33255454	1	4	176	0	1	0	0	0	0	0	0	0	16042	1044	36	3		3	TIMP3	22	33255454	3'UTR	SNP	G	TCGA-55-1594-01A-01D-1040-01	1923043	33255454	18049112	351	143578											
MYH9	4627	broad.mit.edu	37	chr22	36717704	36717704	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtcaggatgggcccataAaggggaaagtgctggaatca	16	6	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	36717704	G	G	36717704	1	3	176	0	1	0	0	0	0	0	0	0	10136	29	1	5		5	MYH9	22	36717704	Intron	SNP	A	TCGA-55-1594-01A-01D-1040-01	3462250	36717704	14586862	352	143579											
C22orf33	339669	broad.mit.edu	37	chr22	37387544	37387544	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatcatccgtcttcctgccAtgccagtgttctaagtccct	7	14	3	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37387544	T	T	37387544	3	4	176	1	0	0	0	0	1	0	0	0	2167	214	8	5	127	5	C22orf33	22	37387544	Missense_Mutation	SNP	A	TCGA-55-1594-01A-01D-1040-01	669840	37387544	13917022	353	143580											
NLGN4X	57502	broad.mit.edu	37	chrX	5827176	5827176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggtcactctcttggggtCcccgccaaaggctcccacat	10	15	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	5827176	A	A	5827176	3	1	176	1	0	0	0	0	1	0	0	0	10559	855	30	3	1732	3	NLGN4X	23	5827176	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01		5827176	149443384	354	143581											
PIR	8544	broad.mit.edu	37	chrX	15408262	15408262	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatgtatactgttttcaaaGaaaaggaaaatcaaccaaga	6	6	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	15408262	C	C	15408262	1	2	176	0	1	0	0	0	0	0	0	0	12039	957	33	4		4	PIR	23	15408262	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	9581086	15408262	139862298	355	143582											
DCAF8L2	347442	broad.mit.edu	37	chrX	27766598	27766598	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttacctacctgtgttggCgtgcagtggcctagatcatg	11	12	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	27766598	T	T	27766598	3	4	176	1	0	0	0	0	1	0	0	0	4311	768	27	4	1588	4	DCAF8L2	23	27766598	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	12358336	27766598	127503962	356	143583											
FAM47B	170062	broad.mit.edu	37	chrX	34962140	34962140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtcggatgccccatctcCgcctggtgcttcccataact	9	15	1	1			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	34962140	T	T	34962140	3	4	176	1	0	0	0	0	1	0	0	0	5621	652	23	4	1194	4	FAM47B	23	34962140	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	7195542	34962140	120308420	357	143584											
PHF16	9767	broad.mit.edu	37	chrX	46913983	46913983	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccaaaagaggaaagcattCacactcgaatgagaatgttt	9	7	1	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46913983	T	T	46913983	3	4	176	1	0	0	0	0	1	0	0	0	11922	826	29	4	1426	4	PHF16	23	46913983	Missense_Mutation	SNP	C	TCGA-55-1594-01A-01D-1040-01	11951843	46913983	108356577	358	143585											
DLG3	1741	broad.mit.edu	37	chrX	69715196	69715196	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccattccctcccatccCttccccttcccccctcttct	0	24	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	69715196	T	T	69715196	1	4	176	0	1	0	0	0	0	0	0	0	4596	696	24	4		4	DLG3	23	69715196	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	22801213	69715196	85555364	359	143586											
TNMD	64102	broad.mit.edu	37	chrX	99854065	99854065	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagatcttcactttcctgcCaacgaaaaaaaagggattga	8	8	2	2			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	99854065	G	G	99854065	2	3	176	1	0	0	0	0	0	0	0	1	16445	581	21	4		4	TNMD	23	99854065	Silent	SNP	C	TCGA-55-1594-01A-01D-1040-01	30138869	99854065	55416495	360	143587											
AMOT	154796	broad.mit.edu	37	chrX	112048030	112048030	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagcaaagtccactcacatCagcacagtggaaactaggag	9	10	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	112048030	G	G	112048030	1	3	176	0	1	0	0	0	0	0	0	0	582	841	29	4		4	AMOT	23	112048030	Intron	SNP	C	TCGA-55-1594-01A-01D-1040-01	12193965	112048030	43222530	361	143588											
HTATSF1	27336	broad.mit.edu	37	chrX	135585185	135585185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctagttttattctgtcaaGtgtgcctacacattatttta	5	7	3	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	135585185	T	T	135585185	1	4	176	0	1	0	0	0	0	0	0	0	7503	1044	36	3		3	HTATSF1	23	135585185	Intron	SNP	G	TCGA-55-1594-01A-01D-1040-01	23537155	135585185	19685375	362	143589											
FLNA	2316	broad.mit.edu	37	chrX	153593044	153593044	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagccgtcgcccttgtcGtcacattcgatcttagcctg	10	14	2	0			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	153593044	A	A	153593044	2	1	176	1	0	0	0	0	0	0	0	1	5991	1136	40	4		4	FLNA	23	153593044	Silent	SNP	G	TCGA-55-1594-01A-01D-1040-01	18007859	153593044	1677516	363	143590											
MMEL1	79258	broad.mit.edu	37	chr1	2535558	2535558	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagcccactcgctgccCgctccccacccgccccggcc	7	27	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2535558	T	T	2535558	1	4	177	0	1	0	0	0	0	0	0	0	9739	667	23	4		4	MMEL1	1	2535558	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08		2535558	246715063	1	143591											
AJAP1	55966	broad.mit.edu	37	chr1	4829790	4829790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgctgccccgagttcccCgctgcggatgggacctggca	13	15	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4829790	A	A	4829790	1	1	177	0	1	0	0	0	0	0	0	0	438	667	23	1		1	AJAP1	1	4829790	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2294232	4829790	244420831	2	143592											
CASZ1	54897	broad.mit.edu	37	chr1	10702979	10702979	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccggtccatggtggatgactCagaggacatggcgcctgggc	16	11	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10702979	G	G	10702979	3	3	177	1	0	0	0	0	1	0	0	0	2711	835	29	4	1188	4	CASZ1	1	10702979	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	5873189	10702979	238547642	3	143593											
LOC649330	649330	broad.mit.edu	37	chr1	12907355	12907355	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaactccagctggtcatccCcctgatcttcattaacatca	4	15	5	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12907355	T	T	12907355	3	4	177	1	0	0	0	0	1	0	0	0	8969	623	22	4	97	4	LOC649330	1	12907355	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	2204376	12907355	236343266	4	143594											
RAP1GAP	5909	broad.mit.edu	37	chr1	21938085	21938085	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcggaacctgccccgggGccccccaggccacgcctcag	11	21	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21938085	A	A	21938085	1	1	177	0	1	0	0	0	0	0	0	0	13145	1218	42	4		4	RAP1GAP	1	21938085	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	9030730	21938085	227312536	5	143595											
SNHG3-RCC1	751867	broad.mit.edu	37	chr1	28835105	28835105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaggtcactctccccaGgctctgtccaagtggcatag	12	13	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28835105	T	T	28835105	1	4	177	0	1	0	0	0	0	0	0	0	14961	1015	35	2		2	SNHG3-RCC1	1	28835105	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	6897020	28835105	220415516	6	143596											
CSMD2	114784	broad.mit.edu	37	chr1	34189984	34189984	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacccccgtcatcctcctggGaccccatcccccatctctcg	5	23	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34189984	T	T	34189984	1	4	177	0	1	0	0	0	0	0	0	0	3979	1189	41	3		3	CSMD2	1	34189984	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	5354879	34189984	215060637	7	143597											
EDN2	1907	broad.mit.edu	37	chr1	41948221	41948221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcagggagcggcgccggCgtcttggcgggtttcccagg	19	11	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41948221	A	A	41948221	3	1	177	1	0	0	0	0	1	0	0	0	4957	768	27	3	288	3	EDN2	1	41948221	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	7758237	41948221	207302400	8	143598											
CYP4X1	260293	broad.mit.edu	37	chr1	47489533	47489533	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgctgggcgcggcccttttAcctggcgttcgtgttctgcc	14	14	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47489533	T	T	47489533	3	4	177	1	0	0	0	0	1	0	0	0	4226	391	14	5	46	5	CYP4X1	1	47489533	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	5541312	47489533	201761088	9	143599											
LRRC42	115353	broad.mit.edu	37	chr1	54418223	54418223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggcttagtgggctcaGgggcttccctcatcaaatag	13	10	4	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54418223	T	T	54418223	1	4	177	0	1	0	0	0	0	0	0	0	9087	1015	35	2		2	LRRC42	1	54418223	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	6928690	54418223	194832398	10	143600											
C8B	732	broad.mit.edu	37	chr1	57406675	57406675	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctccaccatggtgtccctCttgtttctgtctggaatgga	9	12	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57406675	A	A	57406675	3	1	177	1	0	0	0	0	1	0	0	0	2442	912	32	3	546	3	C8B	1	57406675	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	2988452	57406675	191843946	11	143601											
C1orf87	127795	broad.mit.edu	37	chr1	60466673	60466673	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaacccacaggagagagCcccatccagcatcagagaaa	8	13	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60466673	G	G	60466673	1	3	177	0	1	0	0	0	0	0	0	0	2086	754	26	4		4	C1orf87	1	60466673	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	3059998	60466673	188783948	12	143602											
KANK4	163782	broad.mit.edu	37	chr1	62740108	62740108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggaccagctctggaatcCgagttgatgctcgtgggctg	14	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62740108	A	A	62740108	3	1	177	1	0	0	0	0	1	0	0	0	8049	652	23	1	2351	1	KANK4	1	62740108	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	2273435	62740108	186510513	13	143603											
MSH4	4438	broad.mit.edu	37	chr1	76343982	76343982	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagcaagaagaacatacacaGagattgtagatgacatagca	9	6	0	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76343982	T	T	76343982	4	4	177	1	0	0	0	0	0	1	0	0	9966	943	33	3	1561	3	MSH4	1	76343982	Nonsense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	13603874	76343982	172906639	14	143604											
CLCA4	22802	broad.mit.edu	37	chr1	87036875	87036875	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaaagtggggccattgTtcattttattgctttgggaa	11	5	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87036875	A	A	87036875	3	1	177	1	0	0	0	0	1	0	0	0	3490	1725	60	5	1328	5	CLCA4	1	87036875	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	10692893	87036875	162213746	15	143605											
GBP7	388646	broad.mit.edu	37	chr1	89598950	89598950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagactcaccttcatcttGtgactcaacatctttctcag	4	14	6	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89598950	T	T	89598950	3	4	177	1	0	0	0	0	1	0	0	0	6341	1368	48	3	271	3	GBP7	1	89598950	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2562075	89598950	159651671	16	143606											
ABCA4	24	broad.mit.edu	37	chr1	94574115	94574115	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaaatgatgcttgagagCactgcagtcatgcttacctg	12	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94574115	T	T	94574115	1	4	177	0	1	0	0	0	0	0	0	0	34	725	25	4		4	ABCA4	1	94574115	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	4975165	94574115	154676506	17	143607											
COL11A1	1301	broad.mit.edu	37	chr1	103544335	103544335	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaccaatttgctgaatacCatgctcattatatatagata	4	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103544335	T	T	103544335	3	4	177	1	0	0	0	0	1	0	0	0	3699	594	21	4	5470	4	COL11A1	1	103544335	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	8970220	103544335	145706286	18	143608											
NTNG1	22854	broad.mit.edu	37	chr1	107867518	107867518	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggcacgctacttttacgcGatctcagacataaaggtgcg	10	10	1	1	rs142977353	byFrequency	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107867518	T	T	107867518	2	4	177	1	0	0	0	0	0	0	0	1	10799	1045	37	3		3	NTNG1	1	107867518	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	4323183	107867518	141383103	19	143609											
DENND2C	163259	broad.mit.edu	37	chr1	115143585	115143585	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctacttcatccagaatctaTatacgcaaagtgttatttta	4	8	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115143585	C	C	115143585	1	2	177	0	1	0	0	0	0	0	0	0	4470	1421	49	5		5	DENND2C	1	115143585	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	7276067	115143585	134107036	20	143610											
AMPD1	270	broad.mit.edu	37	chr1	115231560	115231560	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaccttgaaaatatgctctCagaaacatgggtcagattct	8	8	3	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115231560	A	A	115231560	1	1	177	0	1	0	0	0	0	0	0	0	585	841	29	3		3	AMPD1	1	115231560	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	87975	115231560	134019061	21	143611											
HSD3B2	3284	broad.mit.edu	37	chr1	119964814	119964814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgttggcaacgtggcctgGgcccacattctggccttgag	13	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119964814	T	T	119964814	3	4	177	1	0	0	0	0	1	0	0	0	7458	1241	43	2	700	2	HSD3B2	1	119964814	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	4733254	119964814	129285807	22	143612											
ITGA10	8515	broad.mit.edu	37	chr1	145539490	145539490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtgggaatgcaagtggagTtgggtgacttgggacaagag	19	3	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145539490	A	A	145539490	1	1	177	0	1	0	0	0	0	0	0	0	7943	1740	60	5		5	ITGA10	1	145539490	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	25574676	145539490	103711131	23	143613											
NBPF10	100132406	broad.mit.edu	37	chr1	145608345	145608345	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcctaagatagctcagggTtcactcccatagccagctga	10	12	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145608345	C	C	145608345	1	2	177	0	1	0	0	0	0	0	0	0	10287	1740	60	5		5	NBPF10	1	145608345	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	68855	145608345	103642276	24	143614											
BCL9	607	broad.mit.edu	37	chr1	147091685	147091685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataaactctgaaatggaagGgccgaatgtccccaaccctg	10	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147091685	T	T	147091685	3	4	177	1	0	0	0	0	1	0	0	0	1386	1232	43	2	1742	2	BCL9	1	147091685	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1483340	147091685	102158936	25	143615											
MTMR11	10903	broad.mit.edu	37	chr1	149901259	149901259	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatactgttgtagctctggCcccctgcttctctgctactt	8	13	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149901259	T	T	149901259	1	4	177	0	1	0	0	0	0	0	0	0	10034	754	26	4		4	MTMR11	1	149901259	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2809574	149901259	99349362	26	143616											
C1orf51	148523	broad.mit.edu	37	chr1	150255696	150255696	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggattctccatctagcGtttcttcctattcctcctac	4	14	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150255696	T	T	150255696	3	4	177	1	0	0	0	0	1	0	0	0	2065	1145	40	3	21	3	C1orf51	1	150255696	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	354437	150255696	98994925	27	143617											
ZNF687	57592	broad.mit.edu	37	chr1	151261159	151261159	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgggaggcctgtctgcaCgtctctcgccgtgtaggata	13	13	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151261159	T	T	151261159	2	4	177	1	0	0	0	0	0	0	0	1	18219	535	19	4		4	ZNF687	1	151261159	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	1005463	151261159	97989462	28	143618											
CD1B	910	broad.mit.edu	37	chr1	158299037	158299037	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttgggattggggtcaGggaaatcaatcaatcaatct	11	7	5	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158299037	A	A	158299037	1	1	177	0	1	0	0	0	0	0	0	0	3005	1015	35	4		4	CD1B	1	158299037	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	7037878	158299037	90951584	29	143619											
SPTA1	6708	broad.mit.edu	37	chr1	158589178	158589178	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgaaggcctttctttgccAtaagagaattggtttgtagg	11	6	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158589178	G	G	158589178	1	3	177	0	1	0	0	0	0	0	0	0	15234	232	8	5		5	SPTA1	1	158589178	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	290141	158589178	90661443	30	143620											
SPTA1	6708	broad.mit.edu	37	chr1	158617426	158617426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcccaggcctcattcaGctccattttctgtctctgca	6	15	5	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158617426	T	T	158617426	3	4	177	1	0	0	0	0	1	0	0	0	15234	962	34	3	3564	3	SPTA1	1	158617426	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	28248	158617426	90633195	31	143621											
SPTA1	6708	broad.mit.edu	37	chr1	158639464	158639464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcttcttgattctagtgtGtaggcacacagaagctctag	9	9	4	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158639464	T	T	158639464	1	4	177	0	1	0	0	0	0	0	0	0	15234	1392	48	3		3	SPTA1	1	158639464	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	22038	158639464	90611157	32	143622											
SPTA1	6708	broad.mit.edu	37	chr1	158645963	158645963	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtttttcatatctgctGgtggccagggcacgaatatg	12	8	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158645963	T	T	158645963	2	4	177	1	0	0	0	0	0	0	0	1	15234	1335	47	2		2	SPTA1	1	158645963	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	6499	158645963	90604658	33	143623											
DARC	2532	broad.mit.edu	37	chr1	159176052	159176052	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagctgttgctgttgtcaAcatgtctggcccagcaggct	11	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159176052	T	T	159176052	3	4	177	1	0	0	0	0	1	0	0	0	4273	43	2	5	856	5	DARC	1	159176052	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	530089	159176052	90074569	34	143624											
VANGL2	57216	broad.mit.edu	37	chr1	160390262	160390262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacttccctgtctacaacCctgccctcctcaacctgccc	4	20	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160390262	T	T	160390262	3	4	177	1	0	0	0	0	1	0	0	0	17247	623	22	4	876	4	VANGL2	1	160390262	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1214210	160390262	88860359	35	143625											
SLAMF1	6504	broad.mit.edu	37	chr1	160580535	160580535	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccctttgttggtctctgGtgtcagctctctggaagtgt	12	9	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160580535	T	T	160580535	1	4	177	0	1	0	0	0	0	0	0	0	14480	1276	44	3		3	SLAMF1	1	160580535	3'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	190273	160580535	88670086	36	143626											
MAEL	84944	broad.mit.edu	37	chr1	166973413	166973413	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttctcctttttatttcccTcaggtgattctagtcacaag	5	11	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166973413	A	A	166973413	1	1	177	0	1	0	0	0	0	0	0	0	9242	1566	54	5		5	MAEL	1	166973413	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	6392878	166973413	82277208	37	143627											
ADCY10	55811	broad.mit.edu	37	chr1	167805451	167805451	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtcgggaatatacaaCgtgaagtaatcagaaagcat	11	6	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167805451	T	T	167805451	1	4	177	0	1	0	0	0	0	0	0	0	293	551	19	4		4	ADCY10	1	167805451	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	832038	167805451	81445170	38	143628											
XCL2	6846	broad.mit.edu	37	chr1	168513090	168513090	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaacccaaaatgtgtgcCcacctgccttgcctccctat	6	16	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168513090	T	T	168513090	1	4	177	0	1	0	0	0	0	0	0	0	17551	638	22	4		4	XCL2	1	168513090	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	707639	168513090	80737531	39	143629											
BAT2L2	23215	broad.mit.edu	37	chr1	171535858	171535858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggacaagagaaaccaaGcccagctacagtcagaagca	10	10	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171535858	T	T	171535858	3	4	177	1	0	0	0	0	1	0	0	0	1326	971	34	3	6510	3	BAT2L2	1	171535858	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	3022768	171535858	77714763	40	143630											
FASLG	356	broad.mit.edu	37	chr1	172629175	172629175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtttatttgacgattctgCctcttttgcttaaagaattt	7	6	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172629175	A	A	172629175	1	1	177	0	1	0	0	0	0	0	0	0	5739	754	26	3		3	FASLG	1	172629175	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1093317	172629175	76621446	41	143631											
PAPPA2	60676	broad.mit.edu	37	chr1	176563988	176563988	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacagctctgaggatggGcactatttccgtggacacct	13	10	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176563988	T	T	176563988	2	4	177	1	0	0	0	0	0	0	0	1	11527	1190	42	3		3	PAPPA2	1	176563988	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	3934813	176563988	72686633	42	143632											
RASAL2	9462	broad.mit.edu	37	chr1	178389684	178389684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaaaggctccatcaagagGaccaaaagccagtcaaagct	9	11	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178389684	T	T	178389684	3	4	177	1	0	0	0	0	1	0	0	0	13172	1165	41	3	638	3	RASAL2	1	178389684	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1825696	178389684	70860937	43	143633											
RASAL2	9462	broad.mit.edu	37	chr1	178433251	178433251	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacaaatgtatattctctttCcccacccctagccttggcat	4	14	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178433251	T	T	178433251	1	4	177	0	1	0	0	0	0	0	0	0	13172	870	30	4		4	RASAL2	1	178433251	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	43567	178433251	70817370	44	143634											
NPHS2	7827	broad.mit.edu	37	chr1	179533785	179533785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtgtggccagtgagagGcctcaggaaattacctattg	13	8	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179533785	T	T	179533785	1	4	177	0	1	0	0	0	0	0	0	0	10678	1218	42	3		3	NPHS2	1	179533785	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1100534	179533785	69716836	45	143635											
C4BPA	722	broad.mit.edu	37	chr1	207297525	207297525	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcacttacctcagttgtcAagtgtaagcctcctccagac	6	14	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207297525	T	T	207297525	4	4	177	1	0	0	0	0	0	1	0	0	2272	131	5	5	538	5	C4BPA	1	207297525	Nonsense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	27763740	207297525	41953096	46	143636											
RCOR3	55758	broad.mit.edu	37	chr1	211485977	211485977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaggaatttcattgctgGtatcttttgtgtgtgcatga	11	4	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211485977	T	T	211485977	1	4	177	0	1	0	0	0	0	0	0	0	13292	1276	44	3		3	RCOR3	1	211485977	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	4188452	211485977	37764644	47	143637											
KCNK2	3776	broad.mit.edu	37	chr1	215345436	215345436	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctctgcctgcgatcataTtcaaacacatagaaggctgg	10	10	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215345436	C	C	215345436	3	2	177	1	0	0	0	0	1	0	0	0	8136	1493	52	5	794	5	KCNK2	1	215345436	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	3859459	215345436	33905185	48	143638											
USH2A	7399	broad.mit.edu	37	chr1	215940026	215940026	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatattgtttcattaccttCaggagctgcctgcagtgtct	10	9	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215940026	T	T	215940026	3	4	177	1	0	0	0	0	1	0	0	0	17162	835	29	4	4632	4	USH2A	1	215940026	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	594590	215940026	33310595	49	143639											
USH2A	7399	broad.mit.edu	37	chr1	216260243	216260243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaataataaaatccttcacCagcctttgggataccactct	4	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216260243	A	A	216260243	1	1	177	0	1	0	0	0	0	0	0	0	17162	609	21	2		2	USH2A	1	216260243	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	320217	216260243	32990378	50	143640											
USH2A	7399	broad.mit.edu	37	chr1	216420069	216420069	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgaaaattgtcaatggtCaaattgtacctgtgaggctc	10	6	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216420069	T	T	216420069	2	4	177	1	0	0	0	0	0	0	0	1	17162	825	29	4		4	USH2A	1	216420069	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	159826	216420069	32830552	51	143641											
USH2A	7399	broad.mit.edu	37	chr1	216420340	216420340	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccagggagggatccagctGtgtcacagtcacaggcctta	12	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216420340	C	C	216420340	3	2	177	1	0	0	0	0	1	0	0	0	17162	1377	48	4	13466	4	USH2A	1	216420340	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	271	216420340	32830281	52	143642											
HHIPL2	79802	broad.mit.edu	37	chr1	222717353	222717353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccaggaggtggcagaagCgggtaccgtcccttccatga	15	11	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222717353	A	A	222717353	3	1	177	1	0	0	0	0	1	0	0	0	7161	768	27	3	1706	3	HHIPL2	1	222717353	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	6297013	222717353	26533268	53	143643											
RYR2	6262	broad.mit.edu	37	chr1	237880548	237880548	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagcgcaaaggagatcgGtattccatgcagacctctct	10	10	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237880548	T	T	237880548	2	4	177	1	0	0	0	0	0	0	0	1	13880	1248	44	3		3	RYR2	1	237880548	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	15163195	237880548	11370073	54	143644											
FMN2	56776	broad.mit.edu	37	chr1	240371461	240371461	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccccctctacccggagcgGgcataccccctcctccccct	7	24	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240371461	T	T	240371461	3	4	177	1	0	0	0	0	1	0	0	0	6008	1232	43	2	3367	2	FMN2	1	240371461	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2490913	240371461	8879160	55	143645											
ZNF496	84838	broad.mit.edu	37	chr1	247471885	247471885	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggaatggctggagacttgGagagtctttccagaggagga	16	6	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247471885	C	C	247471885	3	2	177	1	0	0	0	0	1	0	0	0	18072	1174	41	4	873	4	ZNF496	1	247471885	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	7100424	247471885	1778736	56	143646											
TRIM58	25893	broad.mit.edu	37	chr1	248027964	248027964	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtcctgtacatggctgcTggaggccaagcactgacgat	12	11	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248027964	C	C	248027964	1	2	177	0	1	0	0	0	0	0	0	0	16656	1595	55	5		5	TRIM58	1	248027964	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	556079	248027964	1222657	57	143647											
OR2L2	26246	broad.mit.edu	37	chr1	248201720	248201720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgattcttctcatctttttgGacatccatctccacacacct	3	14	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248201720	T	T	248201720	3	4	177	1	0	0	0	0	1	0	0	0	11101	1174	41	3	153	3	OR2L2	1	248201720	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	173756	248201720	1048901	58	143648											
OR2L13	284521	broad.mit.edu	37	chr1	248262794	248262794	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atattctttctggcctcggtGggtaactcggccatgattca	10	10	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248262794	C	C	248262794	2	2	177	1	0	0	0	0	0	0	0	1	11100	1335	47	4		4	OR2L13	1	248262794	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	61074	248262794	987827	59	143649											
OR14I1	401994	broad.mit.edu	37	chr1	248845247	248845247	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcaaatggcaacatagCggtcataagacatgacagta	12	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248845247	T	T	248845247	3	4	177	1	0	0	0	0	1	0	0	0	11041	768	27	4	580	4	OR14I1	1	248845247	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	582453	248845247	405374	60	143650											
RAD51AP2	729475	broad.mit.edu	37	chr2	17697105	17697105	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggaaaaaaactatctttctCttccttttctatcttagtat	3	8	4	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17697105	A	A	17697105	4	1	177	1	0	0	0	0	0	1	0	0	13095	922	32	3	913	3	RAD51AP2	2	17697105	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08		17697105	225502268	61	143651											
HADHB	3032	broad.mit.edu	37	chr2	26477077	26477077	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtaaactacaaattgttcAgctaatccaggatatacttt	5	7	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26477077	T	T	26477077	1	4	177	0	1	0	0	0	0	0	0	0	7010	203	7	5		5	HADHB	2	26477077	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	8779972	26477077	216722296	62	143652											
GALNT14	79623	broad.mit.edu	37	chr2	31215762	31215762	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccgctcactctcccgctGgttgaaagcatacagcttat	8	13	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31215762	T	T	31215762	3	4	177	1	0	0	0	0	1	0	0	0	6274	1357	47	2	1473	2	GALNT14	2	31215762	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	4738685	31215762	211983611	63	143653											
LTBP1	4052	broad.mit.edu	37	chr2	33590570	33590570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgccccctgaaggattcaGgtgagcccatatccaattcc	8	14	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33590570	A	A	33590570	3	1	177	1	0	0	0	0	1	0	0	0	9160	1014	35	4	4888	4	LTBP1	2	33590570	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2374808	33590570	209608803	64	143654											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48848487	48848487	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaacaaattctcatttgGgaatgtttttcagttagaca	7	6	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48848487	A	A	48848487	1	1	177	0	1	0	0	0	0	0	0	0	15435	1247	43	4		4	STON1-GTF2A1L	2	48848487	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	15257917	48848487	194350886	65	143655											
PSME4	23198	broad.mit.edu	37	chr2	54122078	54122078	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagaagaagaactgaagtGaggttgagataaatcagtgg	14	2	1	7			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54122078	C	C	54122078	1	2	177	0	1	0	0	0	0	0	0	0	12815	1305	45	4		4	PSME4	2	54122078	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	5273591	54122078	189077295	66	143656											
ANTXR1	84168	broad.mit.edu	37	chr2	69420603	69420603	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctctctcacatacacacAcacacacacacacacacaca	0	19	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69420603	G	G	69420603	1	3	177	0	1	0	0	0	0	0	0	0	711	174	6	5		5	ANTXR1	2	69420603	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	15298525	69420603	173778770	67	143657											
REG1A	5967	broad.mit.edu	37	chr2	79349206	79349206	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgattaaggagagtggCactgatgacttcaatgtctg	11	7	3	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79349206	A	A	79349206	2	1	177	1	0	0	0	0	0	0	0	1	13318	697	25	3		3	REG1A	2	79349206	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	9928603	79349206	163850167	68	143658											
REG3A	5068	broad.mit.edu	37	chr2	79384709	79384709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtttcttacctgtgcttctcGacaggctcgcacagtggccg	11	13	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384709	A	A	79384709	3	1	177	1	0	0	0	0	1	0	0	0	13320	1059	37	4	86	4	REG3A	2	79384709	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	35503	79384709	163814664	69	143659											
CTNNA2	1496	broad.mit.edu	37	chr2	80773162	80773162	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccgtggatgacatcacctCagtggatgacttcctctctg	11	12	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80773162	A	A	80773162	4	1	177	1	0	0	0	0	0	1	0	0	4047	838	29	3	1344	3	CTNNA2	2	80773162	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1388453	80773162	162426211	70	143660											
RMND5A	64795	broad.mit.edu	37	chr2	86992312	86992312	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatttgccctaaatcatcaAaaaggtgagtctagagtcag	8	9	4	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86992312	G	G	86992312	2	3	177	1	0	0	0	0	0	0	0	1	13508	11	1	5		5	RMND5A	2	86992312	Silent	SNP	A	TCGA-55-1595-01A-01D-0969-08	6219150	86992312	156207061	71	143661											
PROM2	150696	broad.mit.edu	37	chr2	95941982	95941982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattcccacaggattggtGtggtctgtgcctttgtcacc	10	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95941982	T	T	95941982	3	4	177	1	0	0	0	0	1	0	0	0	12662	1377	48	3	519	3	PROM2	2	95941982	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	8949670	95941982	147257391	72	143662											
VWA3B	200403	broad.mit.edu	37	chr2	98851064	98851064	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttatatctaatgaagtatctCcttccatccccaattccttt	2	12	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98851064	G	G	98851064	1	3	177	0	1	0	0	0	0	0	0	0	17368	870	30	4		4	VWA3B	2	98851064	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2909082	98851064	144348309	73	143663											
INPP4A	3631	broad.mit.edu	37	chr2	99182412	99182412	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttggccatcactaagccAgagggccagcctgggcactg	13	12	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99182412	G	G	99182412	1	3	177	0	1	0	0	0	0	0	0	0	7822	203	7	5		5	INPP4A	2	99182412	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	331348	99182412	144016961	74	143664											
POTEF	728378	broad.mit.edu	37	chr2	130877801	130877801	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaccacttgcccatcttGttcctgagtgtcttcatagc	7	14	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130877801	A	A	130877801	2	1	177	1	0	0	0	0	0	0	0	1	12361	1368	48	4		4	POTEF	2	130877801	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	31695389	130877801	112321572	75	143665											
HNMT	3176	broad.mit.edu	37	chr2	138758727	138758727	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattgggagaagaactgaatTagttcttggcaggcatgact	12	5	1	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138758727	C	C	138758727	1	2	177	0	1	0	0	0	0	0	0	0	7322	1769	61	5		5	HNMT	2	138758727	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	7880926	138758727	104440646	76	143666											
EPC2	26122	broad.mit.edu	37	chr2	149542324	149542324	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtaaggacagttggccAcaccactacaaaccacttaa	7	12	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149542324	T	T	149542324	3	4	177	1	0	0	0	0	1	0	0	0	5203	159	6	5	2155	5	EPC2	2	149542324	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	10783597	149542324	93657049	77	143667											
XIRP2	129446	broad.mit.edu	37	chr2	167992326	167992326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatgacagaaatccctcCctctttcatttctgccttct	3	16	5	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167992326	A	A	167992326	1	1	177	0	1	0	0	0	0	0	0	0	17557	638	22	2		2	XIRP2	2	167992326	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	18450002	167992326	75207047	78	143668											
TTN	7273	broad.mit.edu	37	chr2	179424886	179424886	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgagtccacaattttgGgtttggatggaggagatggt	15	5	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179424886	C	C	179424886	3	2	177	1	0	0	0	0	1	0	0	0	16861	1232	43	4	22154	4	TTN	2	179424886	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	11432560	179424886	63774487	79	143669											
TTN	7273	broad.mit.edu	37	chr2	179606461	179606461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtgtagccacatccccCatgcttatatcagcatttga	7	12	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179606461	A	A	179606461	3	1	177	1	0	0	0	0	1	0	0	0	16861	594	21	2	93290	2	TTN	2	179606461	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	181575	179606461	63592912	80	143670											
DNAH7	56171	broad.mit.edu	37	chr2	196737076	196737076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaatcacggaggttgaaCaagtagtgagatttagctgg	14	4	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196737076	A	A	196737076	3	1	177	1	0	0	0	0	1	0	0	0	4646	477	17	3	5647	3	DNAH7	2	196737076	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	17130615	196737076	46462297	81	143671											
MARS2	92935	broad.mit.edu	37	chr2	198571774	198571774	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctcagagaggagtcttGgagagctctatttcttgcct	11	10	4	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198571774	T	T	198571774	4	4	177	1	0	0	0	0	0	1	0	0	9409	1349	47	2	1647	2	MARS2	2	198571774	Nonsense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1834698	198571774	44627599	82	143672											
CPS1	1373	broad.mit.edu	37	chr2	211504640	211504640	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagatgagaaatacatactTaatgataggacaactagttt	8	4	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211504640	A	A	211504640	1	1	177	0	1	0	0	0	0	0	0	0	3855	1769	61	5		5	CPS1	2	211504640	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	12932866	211504640	31694733	83	143673											
DNPEP	23549	broad.mit.edu	37	chr2	220239586	220239586	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtgttaccttgaagagGgtgagggtctggaggactcc	18	6	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220239586	A	A	220239586	2	1	177	1	0	0	0	0	0	0	0	1	4719	1219	43	4		4	DNPEP	2	220239586	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	8734946	220239586	22959787	84	143674											
TRIP12	9320	broad.mit.edu	37	chr2	230744731	230744731	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcgtcttgtggttgggccCcggcagtgttcctctgtgaa	14	10	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	230744731	G	G	230744731	3	3	177	1	0	0	0	0	1	0	0	0	16681	623	22	4	6073	4	TRIP12	2	230744731	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	10505145	230744731	12454642	85	143675											
INPP5D	3635	broad.mit.edu	37	chr2	234104231	234104231	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgggtgcgatggttcacGcccataatcccggcactttg	13	13	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234104231	A	A	234104231	1	1	177	0	1	0	0	0	0	0	0	0	7826	1102	38	4		4	INPP5D	2	234104231	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3359500	234104231	9095142	86	143676											
LRRN1	57633	broad.mit.edu	37	chr3	3888136	3888136	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtccaatattcatcagcAgactcaaaagtcatgcgtaa	7	9	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3888136	G	G	3888136	3	3	177	1	0	0	0	0	1	0	0	0	9121	188	7	5	1813	5	LRRN1	3	3888136	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08		3888136	194134294	87	143677											
ARL8B	55207	broad.mit.edu	37	chr3	5220495	5220495	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatacggtccttcctaaacCccagaaattgcctttttcag	6	12	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5220495	T	T	5220495	1	4	177	0	1	0	0	0	0	0	0	0	951	638	22	4		4	ARL8B	3	5220495	3'UTR	SNP	C	TCGA-55-1595-01A-01D-0969-08	1332359	5220495	192801935	88	143678											
GRM7	2917	broad.mit.edu	37	chr3	6903612	6903612	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtagggatgcgctccctCcggggcggagcacacagtgg	17	12	0	0	rs150593300	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6903612	A	A	6903612	1	1	177	0	1	0	0	0	0	0	0	0	6868	870	30	3		3	GRM7	3	6903612	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1683117	6903612	191118818	89	143679											
FANCD2	2177	broad.mit.edu	37	chr3	10070484	10070484	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatataaagttcctgcttttCaagtgctgagaatcttcaaa	7	7	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10070484	T	T	10070484	1	4	177	0	1	0	0	0	0	0	0	0	5722	841	29	4		4	FANCD2	3	10070484	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	3166872	10070484	187951946	90	143680											
GRIP2	80852	broad.mit.edu	37	chr3	14538040	14538040	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgccctcgagggccaccCtctgcacggtgcccgtcatg	12	18	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14538040	T	T	14538040	3	4	177	1	0	0	0	0	1	0	0	0	6854	681	24	4	434	4	GRIP2	3	14538040	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	4467556	14538040	183484390	91	143681											
FGD5	152273	broad.mit.edu	37	chr3	14861865	14861865	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgatgcactggccaacccCtatgtgatgggagtgggcct	14	10	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14861865	T	T	14861865	2	4	177	1	0	0	0	0	0	0	0	1	5893	668	24	4		4	FGD5	3	14861865	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	323825	14861865	183160565	92	143682											
KCNH8	131096	broad.mit.edu	37	chr3	19432274	19432274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcccagtgatatgcagGccagattcttcagttgatga	11	8	2	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19432274	T	T	19432274	1	4	177	0	1	0	0	0	0	0	0	0	8108	1218	42	3		3	KCNH8	3	19432274	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	4570409	19432274	178590156	93	143683											
ZCWPW2	152098	broad.mit.edu	37	chr3	28454767	28454767	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acactgattcaagatataatAactgctcaatttctgaagaa	5	7	3	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28454767	T	T	28454767	3	4	177	1	0	0	0	0	1	0	0	0	17724	362	13	5	210	5	ZCWPW2	3	28454767	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	9022493	28454767	169567663	94	143684											
APEH	327	broad.mit.edu	37	chr3	49712513	49712513	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctggagacagattgagaGattggggaagatagatctag	15	3	2	6			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49712513	A	A	49712513	1	1	177	0	1	0	0	0	0	0	0	0	770	957	33	4		4	APEH	3	49712513	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	21257746	49712513	148309917	95	143685											
PRKCD	5580	broad.mit.edu	37	chr3	53223859	53223859	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caatttcccatggcccttggGtgctaaccagggtccctgct	10	14	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53223859	C	C	53223859	1	2	177	0	1	0	0	0	0	0	0	0	12615	1276	44	4		4	PRKCD	3	53223859	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3511346	53223859	144798571	96	143686											
C3orf63	23272	broad.mit.edu	37	chr3	56675561	56675561	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagagttcaactcatactcaTgtttttgcctcagctcttca	5	11	6	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56675561	A	A	56675561	3	1	177	1	0	0	0	0	1	0	0	0	2261	1464	51	5	2677	5	C3orf63	3	56675561	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	3451702	56675561	141346869	97	143687											
PSMD6	9861	broad.mit.edu	37	chr3	63996663	63996663	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaaaaataacagaattagCtttatagaaaattcttagaa	4	4	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63996663	T	T	63996663	1	4	177	0	1	0	0	0	0	0	0	0	12808	812	28	4		4	PSMD6	3	63996663	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	7321102	63996663	134025767	98	143688											
ROBO1	6091	broad.mit.edu	37	chr3	78680291	78680291	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catattacactgtttacatcTgtttggatgctcctcttacc	5	11	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78680291	G	G	78680291	1	3	177	0	1	0	0	0	0	0	0	0	13624	1595	55	5		5	ROBO1	3	78680291	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	14683628	78680291	119342139	99	143689											
CADM2	253559	broad.mit.edu	37	chr3	86115952	86115952	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatgcaggccaagattctGagttttactaccaggctgaa	10	8	1	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86115952	C	C	86115952	1	2	177	0	1	0	0	0	0	0	0	0	2593	1305	45	4		4	CADM2	3	86115952	3'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	7435661	86115952	111906478	100	143690											
EPHA6	285220	broad.mit.edu	37	chr3	97167531	97167531	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagaactgcgacaggataCagtggctacagtcagaaatt	12	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97167531	A	A	97167531	4	1	177	1	0	0	0	0	0	1	0	0	5213	489	17	3	1877	3	EPHA6	3	97167531	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	11051579	97167531	100854899	101	143691											
OR5AC2	81050	broad.mit.edu	37	chr3	97806174	97806174	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgatagttctaatttggaAcgacccccatcttcatatgc	6	11	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97806174	T	T	97806174	3	4	177	1	0	0	0	0	1	0	0	0	11235	43	2	5	160	5	OR5AC2	3	97806174	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	638643	97806174	100216256	102	143692											
MORC1	27136	broad.mit.edu	37	chr3	108780903	108780903	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcttctttcaatatggattCagctggaagtagaagccaaa	9	7	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108780903	A	A	108780903	4	1	177	1	0	0	0	0	0	1	0	0	9795	835	29	3	2128	3	MORC1	3	108780903	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	10974729	108780903	89241527	103	143693											
MORC1	27136	broad.mit.edu	37	chr3	108829607	108829607	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgctcacctgaaaagacaTcaagtctttcagcccctgca	6	14	5	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108829607	A	A	108829607	3	1	177	1	0	0	0	0	1	0	0	0	9795	1435	50	5	2915	5	MORC1	3	108829607	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	48704	108829607	89192823	104	143694											
CD96	10225	broad.mit.edu	37	chr3	111325760	111325760	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttttttggggctgaaattGggttttattttttaacagct	9	4	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111325760	A	A	111325760	1	1	177	0	1	0	0	0	0	0	0	0	3078	1363	47	4		4	CD96	3	111325760	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	2496153	111325760	86696670	105	143695											
C3orf30	152405	broad.mit.edu	37	chr3	118867243	118867243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagtgtattctgtaaaaaGggatatattctaattgagaa	9	2	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118867243	T	T	118867243	1	4	177	0	1	0	0	0	0	0	0	0	2242	1015	35	2		2	C3orf30	3	118867243	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	7541483	118867243	79155187	106	143696											
ARGFX	503582	broad.mit.edu	37	chr3	121289731	121289731	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgcagccctacaattgCattttgcatttgttttaagg	7	9	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121289731	A	A	121289731	1	1	177	0	1	0	0	0	0	0	0	0	861	725	25	3		3	ARGFX	3	121289731	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2422488	121289731	76732699	107	143697											
MBD4	8930	broad.mit.edu	37	chr3	129155735	129155735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacctgaacagctcttcCtacatccttttttagttttc	3	12	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129155735	A	A	129155735	3	1	177	1	0	0	0	0	1	0	0	0	9439	681	24	2	1014	2	MBD4	3	129155735	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	7866004	129155735	68866695	108	143698											
GRK7	131890	broad.mit.edu	37	chr3	141526434	141526434	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagcagtgtctgctacactCaccttagtgtctttgttctg	8	11	5	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141526434	A	A	141526434	1	1	177	0	1	0	0	0	0	0	0	0	6860	841	29	3		3	GRK7	3	141526434	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	12370699	141526434	56495996	109	143699											
MME	4311	broad.mit.edu	37	chr3	154884756	154884756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccaactcattgaactatGggggcatcggcatggtcata	11	9	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154884756	T	T	154884756	3	4	177	1	0	0	0	0	1	0	0	0	9738	1348	47	2	1792	2	MME	3	154884756	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	13358322	154884756	43137674	110	143700											
SI	6476	broad.mit.edu	37	chr3	164741538	164741538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtctgggaaagtaacaCtcaggtgctttggatagaga	12	6	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164741538	A	A	164741538	3	1	177	1	0	0	0	0	1	0	0	0	14410	564	20	3	2656	3	SI	3	164741538	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	9856782	164741538	33280892	111	143701											
NLGN1	22871	broad.mit.edu	37	chr3	173322495	173322495	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactctctgtatgttgggatGtttgcttcaggctggccatg	13	8	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173322495	C	C	173322495	3	2	177	1	0	0	0	0	1	0	0	0	10556	1377	48	4	109	4	NLGN1	3	173322495	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	8580957	173322495	24699935	112	143702											
NLGN1	22871	broad.mit.edu	37	chr3	173997429	173997429	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgacatactggacaaatttTgctaaaactgggtatgtacc	8	7	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173997429	A	A	173997429	3	1	177	1	0	0	0	0	1	0	0	0	10556	1809	63	5	1652	5	NLGN1	3	173997429	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	674934	173997429	24025001	113	143703											
HTR3C	170572	broad.mit.edu	37	chr3	183772869	183772869	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgttttttcaggaagGcatttgtctttgaatcctgt	10	5	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183772869	T	T	183772869	1	4	177	0	1	0	0	0	0	0	0	0	7516	1218	42	3		3	HTR3C	3	183772869	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	9775440	183772869	14249561	114	143704											
EIF4A2	1974	broad.mit.edu	37	chr3	186502305	186502305	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttgaagctttggaaaggtGagtgtgttcatctcatttat	10	5	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186502305	A	A	186502305	1	1	177	0	1	0	0	0	0	0	0	0	5067	1305	45	4		4	EIF4A2	3	186502305	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	2729436	186502305	11520125	115	143705											
MASP1	5648	broad.mit.edu	37	chr3	186953983	186953983	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggggcacaggctcctgcAgctgcaccagagctatatcg	12	14	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186953983	T	T	186953983	1	4	177	0	1	0	0	0	0	0	0	0	9414	188	7	5		5	MASP1	3	186953983	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	451678	186953983	11068447	116	143706											
LYAR	55646	broad.mit.edu	37	chr4	4275346	4275346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtcttctggttctccgcCctcaggatgctctgggagct	11	13	5	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4275346	A	A	4275346	3	1	177	1	0	0	0	0	1	0	0	0	9191	623	22	2	268	2	LYAR	4	4275346	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08		4275346	186878930	117	143707											
EVC	2121	broad.mit.edu	37	chr4	5798977	5798977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtaagaccagcatggtgGccccacccattccagacagg	11	14	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5798977	T	T	5798977	1	4	177	0	1	0	0	0	0	0	0	0	5327	1218	42	3		3	EVC	4	5798977	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1523631	5798977	185355299	118	143708											
KLF3	51274	broad.mit.edu	37	chr4	38690565	38690565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcatggaatacggagcccGgggatcctgcccgtcatcca	13	14	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38690565	T	T	38690565	2	4	177	1	0	0	0	0	0	0	0	1	8418	1103	39	1		1	KLF3	4	38690565	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	32891588	38690565	152463711	119	143709											
COMMD8	54951	broad.mit.edu	37	chr4	47455122	47455122	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagattctgcagctcctctCtactcatttcaatagaataa	4	10	4	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47455122	T	T	47455122	3	4	177	1	0	0	0	0	1	0	0	0	3754	913	32	4	74	4	COMMD8	4	47455122	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	8764557	47455122	143699154	120	143710											
CORIN	10699	broad.mit.edu	37	chr4	47628279	47628279	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcaaccaatgttgaaatgTaaaggcaatagtaaatctat	7	5	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47628279	A	A	47628279	1	1	177	0	1	0	0	0	0	0	0	0	3784	1653	57	5		5	CORIN	4	47628279	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	173157	47628279	143525997	121	143711											
TEC	7006	broad.mit.edu	37	chr4	48147476	48147476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgcacattgcaccttccCgaatagctttgattgcgact	7	14	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48147476	A	A	48147476	3	1	177	1	0	0	0	0	1	0	0	0	15864	652	23	1	717	1	TEC	4	48147476	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	519197	48147476	143006800	122	143712											
KDR	3791	broad.mit.edu	37	chr4	55956360	55956360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagccaactgattaacaaGgactgggttagtatctttta	9	6	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55956360	T	T	55956360	1	4	177	0	1	0	0	0	0	0	0	0	8209	1015	35	2		2	KDR	4	55956360	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	7808884	55956360	135197916	123	143713											
EPHA5	2044	broad.mit.edu	37	chr4	66356315	66356315	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggagttgcacttcttgcaTgcaatataatatgacacgtc	9	8	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66356315	A	A	66356315	2	1	177	1	0	0	0	0	0	0	0	1	5212	1451	51	5		5	EPHA5	4	66356315	Silent	SNP	T	TCGA-55-1595-01A-01D-0969-08	10399955	66356315	124797961	124	143714											
UBA6	55236	broad.mit.edu	37	chr4	68490009	68490009	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgataatataaacagccTaaaactatccgtgattttaa	4	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68490009	A	A	68490009	1	1	177	0	1	0	0	0	0	0	0	0	16958	1537	53	5		5	UBA6	4	68490009	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	2133694	68490009	122664267	125	143715											
UBA6	55236	broad.mit.edu	37	chr4	68531066	68531066	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatatagatatttaaatttCaactcttattgtcataagag	6	4	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68531066	A	A	68531066	1	1	177	0	1	0	0	0	0	0	0	0	16958	841	29	3		3	UBA6	4	68531066	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	41057	68531066	122623210	126	143716											
C4orf35	85438	broad.mit.edu	37	chr4	71200918	71200918	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcacttcagtaaatgaataTatgctagaaagcgatttttc	7	6	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71200918	A	A	71200918	4	1	177	1	0	0	0	0	0	1	0	0	2288	1413	49	5	164	5	C4orf35	4	71200918	Nonsense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	2669852	71200918	119953358	127	143717											
ALB	213	broad.mit.edu	37	chr4	74277728	74277728	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttagggcagtagctcgcctGagccagagatttcccaaagc	11	11	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74277728	C	C	74277728	2	2	177	1	0	0	0	0	0	0	0	1	486	1277	45	4		4	ALB	4	74277728	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	3076810	74277728	116876548	128	143718											
CCDC158	339965	broad.mit.edu	37	chr4	77234393	77234393	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgatttctgatcattgaaGacattgctgaaaatgttgat	8	5	2	6			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77234393	T	T	77234393	3	4	177	1	0	0	0	0	1	0	0	0	2817	942	33	3	73	3	CCDC158	4	77234393	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2956665	77234393	113919883	129	143719											
ANKRD56	345079	broad.mit.edu	37	chr4	77817346	77817346	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccacaacagccttaacctCtgcaagttttagtgataaac	7	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77817346	A	A	77817346	4	1	177	1	0	0	0	0	0	1	0	0	682	922	32	3	728	3	ANKRD56	4	77817346	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	582953	77817346	113336930	130	143720											
GRID2	2895	broad.mit.edu	37	chr4	94159684	94159684	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacgctttttcctatactaTggttttgcttgattgttttc	6	7	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94159684	C	C	94159684	1	2	177	0	1	0	0	0	0	0	0	0	6838	1479	51	5		5	GRID2	4	94159684	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	16342338	94159684	96994592	131	143721											
PDHA2	5161	broad.mit.edu	37	chr4	96761790	96761790	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttctatgggggcaatggCatcgtcggtgcacagggccc	14	11	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96761790	T	T	96761790	2	4	177	1	0	0	0	0	0	0	0	1	11759	697	25	4		4	PDHA2	4	96761790	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	2602106	96761790	94392486	132	143722											
ADH1A	124	broad.mit.edu	37	chr4	100237013	100237013	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcccttttggtttccgacAgtctgcatgtaagcagtttt	8	10	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100237013	T	T	100237013	1	4	177	0	1	0	0	0	0	0	0	0	307	203	7	5		5	ADH1A	4	100237013	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	3475223	100237013	90917263	133	143723											
TACR3	6870	broad.mit.edu	37	chr4	104510898	104510898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacttgaagtggcggaggCagatttggaattcctgcgag	15	6	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104510898	A	A	104510898	3	1	177	1	0	0	0	0	1	0	0	0	15626	710	25	3	62	3	TACR3	4	104510898	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	4273885	104510898	86643378	134	143724											
LEF1	51176	broad.mit.edu	37	chr4	109004633	109004633	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacagagaggtatcatttaCagattcacaggatatttaac	8	6	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109004633	T	T	109004633	1	4	177	0	1	0	0	0	0	0	0	0	8786	493	17	4		4	LEF1	4	109004633	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	4493735	109004633	82149643	135	143725											
AGXT2L1	64850	broad.mit.edu	37	chr4	109663845	109663845	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggactgacttaacaagtccAcacacaaacaaaggacacag	7	11	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109663845	T	T	109663845	1	4	177	0	1	0	0	0	0	0	0	0	406	174	6	5		5	AGXT2L1	4	109663845	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	659212	109663845	81490431	136	143726											
NDST4	64579	broad.mit.edu	37	chr4	115998013	115998013	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttcagctccattgacctAtatggtagaattttgatgtc	8	7	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115998013	G	G	115998013	2	3	177	1	0	0	0	0	0	0	0	1	10353	456	16	5		5	NDST4	4	115998013	Silent	SNP	A	TCGA-55-1595-01A-01D-0969-08	6334168	115998013	75156263	137	143727											
KIAA1109	84162	broad.mit.edu	37	chr4	123179859	123179859	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttgaactgtttcagccaCagtcagtgaacacacaatgc	7	11	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123179859	T	T	123179859	3	4	177	1	0	0	0	0	1	0	0	0	8278	478	17	4	6781	4	KIAA1109	4	123179859	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	7181846	123179859	67974417	138	143728											
FAT4	79633	broad.mit.edu	37	chr4	126237791	126237791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcacctacaggctcagCgaaagccacgccctgtttgc	10	15	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126237791	A	A	126237791	3	1	177	1	0	0	0	0	1	0	0	0	5749	767	27	3	227	3	FAT4	4	126237791	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	3057932	126237791	64916485	139	143729											
PCDH18	54510	broad.mit.edu	37	chr4	138442797	138442797	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagggcagtggtggcatccAgcactggtcagagtgtccca	15	10	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138442797	T	T	138442797	3	4	177	1	0	0	0	0	1	0	0	0	11607	188	7	5	617	5	PCDH18	4	138442797	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	12205006	138442797	52711479	140	143730											
INPP4B	8821	broad.mit.edu	37	chr4	143226509	143226509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagctatttgagaactgaCatctaacatctgcaagaatt	6	7	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143226509	A	A	143226509	1	1	177	0	1	0	0	0	0	0	0	0	7823	493	17	3		3	INPP4B	4	143226509	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	4783712	143226509	47927767	141	143731											
GYPA	2993	broad.mit.edu	37	chr4	144928021	144928021	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actgggacaaaaactcatatCcattgacttccaactcaatg	5	11	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144928021	G	G	144928021	1	3	177	0	1	0	0	0	0	0	0	0	6973	870	30	4		4	GYPA	4	144928021	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1701512	144928021	46226255	142	143732											
GYPA	2993	broad.mit.edu	37	chr4	144928053	144928053	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactcaatgccttttctgctCaatctcattgtcttggacag	6	11	5	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144928053	G	G	144928053	1	3	177	0	1	0	0	0	0	0	0	0	6973	841	29	4		4	GYPA	4	144928053	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	32	144928053	46226223	143	143733											
PET112L	5188	broad.mit.edu	37	chr4	152622522	152622522	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcatcccatactgttGgacaagcttctctcgggtca	9	13	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152622522	A	A	152622522	4	1	177	1	0	0	0	0	0	1	0	0	11828	1357	47	4	537	4	PET112L	4	152622522	Nonsense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	7694469	152622522	38531754	144	143734											
C4orf41	60684	broad.mit.edu	37	chr4	184614953	184614953	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attaaataagcatcagtgatGtcaactctaggacttttgtt	7	6	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184614953	C	C	184614953	1	2	177	0	1	0	0	0	0	0	0	0	2293	1392	48	4		4	C4orf41	4	184614953	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	31992431	184614953	6539323	145	143735											
ADAMTS16	170690	broad.mit.edu	37	chr5	5303444	5303444	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtgcccagagccgcccCgtgcagtgcacacggcgggt	18	14	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5303444	A	A	5303444	2	1	177	1	0	0	0	0	0	0	0	1	261	639	23	1		1	ADAMTS16	5	5303444	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08		5303444	175611816	146	143736											
KIAA0947	23379	broad.mit.edu	37	chr5	5457835	5457836	+	Frame_Shift_Ins	INS	-	A	A													tcacctcacccgggttccttINSaccgtcttcatttgcacctg							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5457836	A	A	5457835	7	5	177	1	0	1	1	0	0	0	0	0	8272	1764	61	0	1128	0	KIAA0947	5	5457835	Frame_Shift_Ins	INS	-	TCGA-55-1595-01A-01D-0969-08	154391	5457835	175457425	147	143737											
NSUN2	54888	broad.mit.edu	37	chr5	6625775	6625775	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtgccaggcaagttcttCaggatacctgaccaaaaaga	10	9	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6625775	T	T	6625775	3	4	177	1	0	0	0	0	1	0	0	0	10773	835	29	4	2000	4	NSUN2	5	6625775	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1167940	6625775	174289485	148	143738											
CCT5	22948	broad.mit.edu	37	chr5	10250442	10250442	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggggggaagtaattccgGttgttgcaccatggcgtcca	15	8	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10250442	T	T	10250442	1	4	177	0	1	0	0	0	0	0	0	0	2986	1276	44	3		3	CCT5	5	10250442	5'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	3624667	10250442	170664818	149	143739											
MARCH11	441061	broad.mit.edu	37	chr5	16177941	16177941	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttagcaggcacagctgaTgtgtataccgaactgaccca	9	10	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16177941	A	A	16177941	3	1	177	1	0	0	0	0	1	0	0	0	9392	1464	51	5	633	5	MARCH11	5	16177941	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	5927499	16177941	164737319	150	143740											
FAM134B	54463	broad.mit.edu	37	chr5	16477956	16477956	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgctgaagggaatattttGaaaaatccatatgaaccccc	7	9	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16477956	C	C	16477956	1	2	177	0	1	0	0	0	0	0	0	0	5492	1305	45	4		4	FAM134B	5	16477956	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	300015	16477956	164437304	151	143741											
PRDM9	56979	broad.mit.edu	37	chr5	23524412	23524412	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactgggaactcactgcctcTtttctttccctttgcctgcc	6	15	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23524412	A	A	23524412	1	1	177	0	1	0	0	0	0	0	0	0	12569	1624	56	5		5	PRDM9	5	23524412	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	7046456	23524412	157390848	152	143742											
CDH9	1007	broad.mit.edu	37	chr5	26915712	26915712	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaacaaataaaaagtaGtttacatggattagaatata	5	3	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26915712	A	A	26915712	1	1	177	0	1	0	0	0	0	0	0	0	3147	1044	36	4		4	CDH9	5	26915712	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3391300	26915712	153999548	153	143743											
PDZD2	23037	broad.mit.edu	37	chr5	32077588	32077588	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatctctgggaaagctgacCactggagatgcttgtgtctc	12	9	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32077588	G	G	32077588	2	3	177	1	0	0	0	0	0	0	0	1	11795	581	21	4		4	PDZD2	5	32077588	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	5161876	32077588	148837672	154	143744											
ADAMTS12	81792	broad.mit.edu	37	chr5	33549521	33549521	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaatcaaaggcgatctctGagtcattggcatcaggcctc	9	10	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33549521	T	T	33549521	1	4	177	0	1	0	0	0	0	0	0	0	257	1305	45	3		3	ADAMTS12	5	33549521	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1471933	33549521	147365739	155	143745											
RAI14	26064	broad.mit.edu	37	chr5	34829927	34829927	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttatgccccttgaagtatCtggacatcctaaagaaatac	8	9	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34829927	G	G	34829927	1	3	177	0	1	0	0	0	0	0	0	0	13116	928	32	4		4	RAI14	5	34829927	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1280406	34829927	146085333	156	143746											
HCN1	348980	broad.mit.edu	37	chr5	45262863	45262863	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgattgttgaaaacaccAgtgttcagatccttctggaa	8	9	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45262863	G	G	45262863	2	3	177	1	0	0	0	0	0	0	0	1	7062	175	7	5		5	HCN1	5	45262863	Silent	SNP	A	TCGA-55-1595-01A-01D-0969-08	10432936	45262863	135652397	157	143747											
IL31RA	133396	broad.mit.edu	37	chr5	55195674	55195674	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccaccctcacccccaccGcttctcactgtctcaatgcc	3	23	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55195674	C	C	55195674	1	2	177	0	1	0	0	0	0	0	0	0	7761	1102	38	4		4	IL31RA	5	55195674	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	9932811	55195674	125719586	158	143748											
PDE4D	5144	broad.mit.edu	37	chr5	58286623	58286623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgtaatagaactcaacCaccttacctgaaaaatggtg	6	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58286623	A	A	58286623	1	1	177	0	1	0	0	0	0	0	0	0	11736	609	21	2		2	PDE4D	5	58286623	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	3090949	58286623	122628637	159	143749											
F2RL2	2151	broad.mit.edu	37	chr5	75919099	75919099	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacgttatgaaatctgtAaaatcatggagcacaatttc	6	6	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75919099	G	G	75919099	1	3	177	0	1	0	0	0	0	0	0	0	5388	377	13	5		5	F2RL2	5	75919099	5'UTR	SNP	A	TCGA-55-1595-01A-01D-0969-08	17632476	75919099	104996161	160	143750											
SPATA9	83890	broad.mit.edu	37	chr5	95011279	95011279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccacgaattaatgttgctCgattaatcttagctaaagca	6	8	1	0	rs142489768		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95011279	A	A	95011279	3	1	177	1	0	0	0	0	1	0	0	0	15132	884	31	3	561	3	SPATA9	5	95011279	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	19092180	95011279	85903981	161	143751											
FAM170A	340069	broad.mit.edu	37	chr5	118968429	118968429	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catcatatctctgttcccttCatacctttctcaggaatgtc	4	13	4	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118968429	A	A	118968429	1	1	177	0	1	0	0	0	0	0	0	0	5534	841	29	3		3	FAM170A	5	118968429	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	23957150	118968429	61946831	162	143752											
CDKL3	51265	broad.mit.edu	37	chr5	133541766	133541766	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgcacatctccacagacAgtaactggacatcgaacctc	6	15	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133541766	G	G	133541766	2	3	177	1	0	0	0	0	0	0	0	1	3185	175	7	5		5	CDKL3	5	133541766	Silent	SNP	A	TCGA-55-1595-01A-01D-0969-08	14573337	133541766	47373494	163	143753											
TRPC7	57113	broad.mit.edu	37	chr5	135567123	135567123	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtgacgttataaacgccGtagagaacgtagccaatgtt	11	7	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135567123	A	A	135567123	2	1	177	1	0	0	0	0	0	0	0	1	16709	1140	40	4		4	TRPC7	5	135567123	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	2025357	135567123	45348137	164	143754											
BRD8	10902	broad.mit.edu	37	chr5	137505153	137505153	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaataggtatgttgcattaCtaaagcagcataataagttt	7	5	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137505153	T	T	137505153	1	4	177	0	1	0	0	0	0	0	0	0	1515	580	20	4		4	BRD8	5	137505153	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1938030	137505153	43410107	165	143755											
SLC4A9	83697	broad.mit.edu	37	chr5	139751895	139751895	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggaactcctctggctGgatgagctgatgccagagga	13	11	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139751895	A	A	139751895	2	1	177	1	0	0	0	0	0	0	0	1	14774	1335	47	4		4	SLC4A9	5	139751895	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	2246742	139751895	41163365	166	143756											
PCDHB3	56132	broad.mit.edu	37	chr5	140481424	140481424	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcctgaaaccatctgtAgagaatttttacaccctagt	5	10	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140481424	G	G	140481424	2	3	177	1	0	0	0	0	0	0	0	1	11637	407	15	5		5	PCDHB3	5	140481424	Silent	SNP	A	TCGA-55-1595-01A-01D-0969-08	729529	140481424	40433836	167	143757											
PCDHB10	56126	broad.mit.edu	37	chr5	140574229	140574229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttggcctcggtgtcttcgCtcttcctcctctcggtgctc	10	16	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140574229	A	A	140574229	3	1	177	1	0	0	0	0	1	0	0	0	11629	797	28	3	2106	3	PCDHB10	5	140574229	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	92805	140574229	40341031	168	143758											
PCDH12	51294	broad.mit.edu	37	chr5	141336580	141336580	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttactgaggaagaactcCacctccccattggggccttg	10	13	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141336580	T	T	141336580	2	4	177	1	0	0	0	0	0	0	0	1	11604	581	21	4		4	PCDH12	5	141336580	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	762351	141336580	39578680	169	143759											
RNF14	9604	broad.mit.edu	37	chr5	141359874	141359875	+	Frame_Shift_Ins	INS	-	G	G													tgccttctgtactttgtgcaINSggttgacctaccatggggtc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141359875	G	G	141359874	7	5	177	1	0	1	1	0	0	0	0	0	13554	179	7	0	1035	0	RNF14	5	141359874	Frame_Shift_Ins	INS	-	TCGA-55-1595-01A-01D-0969-08	23294	141359874	39555386	170	143760											
PPP2R2B	5521	broad.mit.edu	37	chr5	146077811	146077811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattgggggtgggatgagGgcagggccatgaggatgagg	22	4	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146077811	T	T	146077811	1	4	177	0	1	0	0	0	0	0	0	0	12486	1247	43	2		2	PPP2R2B	5	146077811	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	4717937	146077811	34837449	171	143761											
SH3TC2	79628	broad.mit.edu	37	chr5	148388514	148388514	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagcttattgaaaatccgGagctcagttctcaccgcctt	8	12	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148388514	T	T	148388514	2	4	177	1	0	0	0	0	0	0	0	1	14375	1161	41	3		3	SH3TC2	5	148388514	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	2310703	148388514	32526746	172	143762											
PPARGC1B	133522	broad.mit.edu	37	chr5	149206541	149206541	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcaatccgctccagcccCgcaggggactccgtgcatca	11	16	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149206541	T	T	149206541	1	4	177	0	1	0	0	0	0	0	0	0	12397	667	23	4		4	PPARGC1B	5	149206541	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	818027	149206541	31708719	173	143763											
NDST1	3340	broad.mit.edu	37	chr5	149919745	149919745	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgcactcctggacgaacctCcggctgcagacactgccccc	9	19	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149919745	G	G	149919745	2	3	177	1	0	0	0	0	0	0	0	1	10350	842	30	4		4	NDST1	5	149919745	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	713204	149919745	30995515	174	143764											
FAT2	2196	broad.mit.edu	37	chr5	150897191	150897191	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgccttaccttcagggagAcggacgctgtttcattggtg	13	9	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150897191	T	T	150897191	3	4	177	1	0	0	0	0	1	0	0	0	5747	275	10	5	1616	5	FAT2	5	150897191	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	977446	150897191	30018069	175	143765											
GRIA1	2890	broad.mit.edu	37	chr5	153174228	153174228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgaacgagcaggggctttTggacaaattgaaaaacaaat	10	6	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153174228	C	C	153174228	1	2	177	0	1	0	0	0	0	0	0	0	6833	1821	63	5		5	GRIA1	5	153174228	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	2277037	153174228	27741032	176	143766											
KIF4B	285643	broad.mit.edu	37	chr5	154395374	154395374	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgggtacagttaatgcGtcaaatgaaagaggatgctg	13	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154395374	A	A	154395374	3	1	177	1	0	0	0	0	1	0	0	0	8374	1145	40	4	1957	4	KIF4B	5	154395374	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1221146	154395374	26519886	177	143767											
FAM71B	153745	broad.mit.edu	37	chr5	156590618	156590618	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcagatacatcacaagGcttgtagagcccagtctcac	10	12	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156590618	C	C	156590618	3	2	177	1	0	0	0	0	1	0	0	0	5659	1203	42	4	1163	4	FAM71B	5	156590618	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2195244	156590618	24324642	178	143768											
ODZ2	57451	broad.mit.edu	37	chr5	167625975	167625975	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttttacgccatggacacCctggtgatgaagaccgagga	12	10	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167625975	A	A	167625975	2	1	177	1	0	0	0	0	0	0	0	1	10930	610	22	2		2	ODZ2	5	167625975	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	11035357	167625975	13289285	179	143769											
C5orf25	375484	broad.mit.edu	37	chr5	175763947	175763947	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaggcccgaacccttcccAtaggattttagcttaaaaca	6	12	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175763947	G	G	175763947	1	3	177	0	1	0	0	0	0	0	0	0	2311	232	8	5		5	C5orf25	5	175763947	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	8137972	175763947	5151313	180	143770											
HK3	3101	broad.mit.edu	37	chr5	176308331	176308331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcttgtagagcgttccatCcacccccacagacactgcca	7	17	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176308331	A	A	176308331	3	1	177	1	0	0	0	0	1	0	0	0	7259	855	30	3	180	3	HK3	5	176308331	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	544384	176308331	4606929	181	143771											
DDX41	51428	broad.mit.edu	37	chr5	176940312	176940312	+	Intron	DEL	C	-	-													gggagacttgtcagatccagCccccacaggtgagagaccgc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	176940312	-	-	176940312	6	5	177	0	1	1	0	1	0	0	0	0	4394	754	26	0		0	DDX41	5	176940312	Intron	DEL	C	TCGA-55-1595-01A-01D-0969-08	631981	176940312	3974948	182	143772											
RUFY1	80230	broad.mit.edu	37	chr5	178999666	178999666	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgagcacgggaaagtttgTcccactggctggaagcctgg	15	9	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178999666	C	C	178999666	1	2	177	0	1	0	0	0	0	0	0	0	13849	1682	58	5		5	RUFY1	5	178999666	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	2059354	178999666	1915594	183	143773											
FLT4	2324	broad.mit.edu	37	chr5	180052973	180052973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggtgagggcctggcgGctgtgacgcgagtagatgct	19	8	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180052973	T	T	180052973	3	4	177	1	0	0	0	0	1	0	0	0	6002	1194	42	3	2866	3	FLT4	5	180052973	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1053307	180052973	862287	184	143774											
RNF144B	255488	broad.mit.edu	37	chr6	18399923	18399923	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgccagtgcatcttttGcacagctgtgagttttcctt	10	9	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18399923	C	C	18399923	3	2	177	1	0	0	0	0	1	0	0	0	13557	1319	46	4	160	4	RNF144B	6	18399923	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08		18399923	152715144	185	143775											
GABBR1	2550	broad.mit.edu	37	chr6	29541930	29541930	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgctggtcaacctctgGgagccaaagaagaccatcat	12	10	3	2	rs115684491	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29541930	T	T	29541930	1	4	177	0	1	0	0	0	0	0	0	0	6215	1247	43	2		2	GABBR1	6	29541930	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	11142007	29541930	141573137	186	143776											
GRM4	2914	broad.mit.edu	37	chr6	34029667	34029667	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accctgctgccacctgccctCacctgatgtcatcctcgttg	7	18	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34029667	A	A	34029667	1	1	177	0	1	0	0	0	0	0	0	0	6865	841	29	3		3	GRM4	6	34029667	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	4487737	34029667	137085400	187	143777											
TBC1D22B	55633	broad.mit.edu	37	chr6	37259212	37259212	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttgtttttcccaagagTccagccagtaggtatgtctt	9	9	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37259212	C	C	37259212	1	2	177	0	1	0	0	0	0	0	0	0	15731	1682	58	5		5	TBC1D22B	6	37259212	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	3229545	37259212	133855855	188	143778											
FTSJD2	23070	broad.mit.edu	37	chr6	37443833	37443833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctactggagctgtgaaaatGccctgggggtaggggtgctg	17	8	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37443833	T	T	37443833	1	4	177	0	1	0	0	0	0	0	0	0	6151	1334	46	3		3	FTSJD2	6	37443833	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	184621	37443833	133671234	189	143779											
PTK7	5754	broad.mit.edu	37	chr6	43107027	43107027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgagccagcatgtcttGggggagcacccttcctggct	15	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43107027	T	T	43107027	1	4	177	0	1	0	0	0	0	0	0	0	12871	1363	47	2		2	PTK7	6	43107027	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	5663194	43107027	128008040	190	143780											
SRF	6722	broad.mit.edu	37	chr6	43146745	43146745	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccatctgcttttctgctcAggcctgtggttggcaggcag	13	12	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43146745	T	T	43146745	1	4	177	0	1	0	0	0	0	0	0	0	15261	203	7	5		5	SRF	6	43146745	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	39718	43146745	127968322	191	143781											
MEP1A	4224	broad.mit.edu	37	chr6	46801130	46801130	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagacttgcttttcatgtGtgcagtggggagaacgatgc	14	6	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46801130	A	A	46801130	2	1	177	1	0	0	0	0	0	0	0	1	9568	1364	48	4		4	MEP1A	6	46801130	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	3654385	46801130	124313937	192	143782											
OPN5	221391	broad.mit.edu	37	chr6	47775776	47775776	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaagtaaatgaaaacaatGacagactttcttggctgtga	8	6	1	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47775776	A	A	47775776	1	1	177	0	1	0	0	0	0	0	0	0	10977	1305	45	4		4	OPN5	6	47775776	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	974646	47775776	123339291	193	143783											
C6orf138	442213	broad.mit.edu	37	chr6	47846657	47846657	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaaggaggggttgaacacGatgaatcggatgctctttga	13	6	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47846657	T	T	47846657	2	4	177	1	0	0	0	0	0	0	0	1	2355	1048	37	3		3	C6orf138	6	47846657	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	70881	47846657	123268410	194	143784											
CRISP1	167	broad.mit.edu	37	chr6	49808671	49808671	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgttggcggcaagatgcaAtggcacagccaatcaggtaa	12	9	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49808671	G	G	49808671	3	3	177	1	0	0	0	0	1	0	0	0	3911	101	4	5	288	5	CRISP1	6	49808671	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	1962014	49808671	121306396	195	143785											
OOEP	441161	broad.mit.edu	37	chr6	74078614	74078614	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagcagttgatactaaccAtggacagggacaagtgtttg	12	6	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74078614	G	G	74078614	1	3	177	0	1	0	0	0	0	0	0	0	10964	232	8	5		5	OOEP	6	74078614	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	24269943	74078614	97036453	196	143786											
MCHR2	84539	broad.mit.edu	37	chr6	100395868	100395868	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaagagatagaggaaacTgaggattgacattgaatgta	12	3	0	6			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100395868	C	C	100395868	1	2	177	0	1	0	0	0	0	0	0	0	9476	1595	55	5		5	MCHR2	6	100395868	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	26317254	100395868	70719199	197	143787											
DSE	29940	broad.mit.edu	37	chr6	116758380	116758380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattttctttgtcatgttgGcaatgcaactgacttatttc	6	8	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116758380	T	T	116758380	3	4	177	1	0	0	0	0	1	0	0	0	4814	1203	42	3	2767	3	DSE	6	116758380	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	16362512	116758380	54356687	198	143788											
C6orf58	352999	broad.mit.edu	37	chr6	127901387	127901387	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgttagtgcttgtagtaaTagtaaatcttttgttcttac	7	4	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127901387	C	C	127901387	1	2	177	0	1	0	0	0	0	0	0	0	2391	1421	49	5		5	C6orf58	6	127901387	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	11143007	127901387	43213680	199	143789											
MYCT1	80177	broad.mit.edu	37	chr6	153043128	153043128	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttccagcgacaagcttccCtggaacaagcaaattccttt	6	14	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153043128	T	T	153043128	2	4	177	1	0	0	0	0	0	0	0	1	10116	680	24	4		4	MYCT1	6	153043128	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	25141741	153043128	18071939	200	143790											
PLG	5340	broad.mit.edu	37	chr6	161159491	161159491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtcaaaattaagtgaacGtgtctttctggctttctgta	9	6	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161159491	T	T	161159491	1	4	177	0	1	0	0	0	0	0	0	0	12181	1160	40	3		3	PLG	6	161159491	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	8116363	161159491	9955576	201	143791											
AGPAT4	56895	broad.mit.edu	37	chr6	161575173	161575173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacagctgctctggtgcCtacatacaaaatacttctcg	8	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161575173	A	A	161575173	1	1	177	0	1	0	0	0	0	0	0	0	389	696	24	2		2	AGPAT4	6	161575173	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	415682	161575173	9539894	202	143792											
CARD11	84433	broad.mit.edu	37	chr7	2962898	2962898	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggctgtcgccattcagCgtcgtgtgctgcaccgaggg	16	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2962898	G	G	2962898	2	3	177	1	0	0	0	0	0	0	0	1	2671	755	27	4		4	CARD11	7	2962898	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08		2962898	156175765	203	143793											
SDK1	221935	broad.mit.edu	37	chr7	4153064	4153064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaccagcctgcggcttcGctgggtggtgagtgggggtg	20	8	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4153064	T	T	4153064	3	4	177	1	0	0	0	0	1	0	0	0	14081	1087	38	3	3672	3	SDK1	7	4153064	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1190166	4153064	154985599	204	143794											
CCDC129	223075	broad.mit.edu	37	chr7	31617846	31617846	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctctccaagcctgtgatgAtttgctaccttatcctcctc	6	14	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31617846	G	G	31617846	3	3	177	1	0	0	0	0	1	0	0	0	2790	333	12	5	994	5	CCDC129	7	31617846	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	27464782	31617846	127520817	205	143795											
HUS1	3364	broad.mit.edu	37	chr7	48007507	48007507	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccacgtttctgtcctcaTgggtgctttcagaggctaaa	10	10	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48007507	A	A	48007507	3	1	177	1	0	0	0	0	1	0	0	0	7529	1464	51	5	194	5	HUS1	7	48007507	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	16389661	48007507	111131156	206	143796											
TBL2	26608	broad.mit.edu	37	chr7	72988684	72988684	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggggctgagtctcaggGtgcacgctgtgccaggtacc	16	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72988684	A	A	72988684	1	1	177	0	1	0	0	0	0	0	0	0	15764	1276	44	4		4	TBL2	7	72988684	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	24981177	72988684	86149979	207	143797											
HSPB1	3315	broad.mit.edu	37	chr7	75933446	75933446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagtcgcgggcccagcttGggggcccagaagctgcaaaa	15	12	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75933446	T	T	75933446	3	4	177	1	0	0	0	0	1	0	0	0	7487	1348	47	2	584	2	HSPB1	7	75933446	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2944762	75933446	83205217	208	143798											
PCLO	27445	broad.mit.edu	37	chr7	82595113	82595113	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctttcccaggttccacctGatcaggttttgctgtgcatg	9	11	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82595113	C	C	82595113	3	2	177	1	0	0	0	0	1	0	0	0	11677	1299	45	4	11542	4	PCLO	7	82595113	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	6661667	82595113	76543550	209	143799											
HEPACAM2	253012	broad.mit.edu	37	chr7	92848849	92848849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagagaacctgatcagGtgataatccttttcaaagaa	9	7	2	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92848849	T	T	92848849	1	4	177	0	1	0	0	0	0	0	0	0	7120	1276	44	3		3	HEPACAM2	7	92848849	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	10253736	92848849	66289814	210	143800											
SLC25A13	10165	broad.mit.edu	37	chr7	95820627	95820627	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagatgattcagaagtacaTacatctaaaactagtttgaa	6	5	2	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95820627	C	C	95820627	1	2	177	0	1	0	0	0	0	0	0	0	14589	1421	49	5		5	SLC25A13	7	95820627	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	2971778	95820627	63318036	211	143801											
CDHR3	222256	broad.mit.edu	37	chr7	105615275	105615275	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcatgtcatcctgcaccCtttttactccacagggggag	9	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105615275	T	T	105615275	1	4	177	0	1	0	0	0	0	0	0	0	3150	696	24	4		4	CDHR3	7	105615275	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	9794648	105615275	53523388	212	143802											
GPR85	54329	broad.mit.edu	37	chr7	112723734	112723734	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggttgtgctgaaacagCgcctcagctccctgtttgag	13	10	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112723734	A	A	112723734	3	1	177	1	0	0	0	0	1	0	0	0	6780	768	27	3	73	3	GPR85	7	112723734	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	7108459	112723734	46414929	213	143803											
TAS2R16	50833	broad.mit.edu	37	chr7	122635568	122635568	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtccacaggcatcagccTtctgacttgcagccattctc	7	15	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122635568	A	A	122635568	3	1	177	1	0	0	0	0	1	0	0	0	15688	1608	56	5	758	5	TAS2R16	7	122635568	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	9911834	122635568	36503095	214	143804											
TSGA14	95681	broad.mit.edu	37	chr7	130044546	130044546	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgaagctgcagaatcaTtgtctaatatttacaaatga	8	6	3	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130044546	G	G	130044546	3	3	177	1	0	0	0	0	1	0	0	0	16745	1493	52	5	864	5	TSGA14	7	130044546	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	7408978	130044546	29094117	215	143805											
DGKI	9162	broad.mit.edu	37	chr7	137170141	137170141	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtaatgaactctctgggaGccagaagaaactgactgtag	12	7	1	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137170141	C	C	137170141	2	2	177	1	0	0	0	0	0	0	0	1	4511	958	34	4		4	DGKI	7	137170141	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	7125595	137170141	21968522	216	143806											
KIAA1549	57670	broad.mit.edu	37	chr7	138546052	138546052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggccacgagggcaaaggCgtcgtccaggagggagtgca	20	9	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138546052	A	A	138546052	3	1	177	1	0	0	0	0	1	0	0	0	8314	768	27	3	792	3	KIAA1549	7	138546052	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1375911	138546052	20592611	217	143807											
CNTNAP2	26047	broad.mit.edu	37	chr7	147183029	147183029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctctctctctgacagatGtgtgcccaatcactgtgagc	9	12	4	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147183029	T	T	147183029	3	4	177	1	0	0	0	0	1	0	0	0	3679	1377	48	3	1715	3	CNTNAP2	7	147183029	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	8636977	147183029	11955634	218	143808											
SSPO	23145	broad.mit.edu	37	chr7	149489614	149489614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtcctctccctggaccgcCcagctgcacatccaccacct	6	20	1	0	rs145666510	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149489614	A	A	149489614	1	1	177	0	1	0	0	0	0	0	0	0	15307	638	22	2		2	SSPO	7	149489614	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2306585	149489614	9649049	219	143809											
PTPRN2	5799	broad.mit.edu	37	chr7	157414049	157414049	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcccccggggctggtaCgtacaggtcagcacggccag	14	15	1	0	rs13308532		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157414049	A	A	157414049	1	1	177	0	1	0	0	0	0	0	0	0	12916	551	19	3		3	PTPRN2	7	157414049	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	7924435	157414049	1724614	220	143810											
MSRA	4482	broad.mit.edu	37	chr8	10177547	10177547	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttaggccaccatgactaGggccaggttctgattttaga	12	9	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10177547	T	T	10177547	1	4	177	0	1	0	0	0	0	0	0	0	9981	1015	35	2		2	MSRA	8	10177547	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08		10177547	136186475	221	143811											
PTK2B	2185	broad.mit.edu	37	chr8	27277505	27277505	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctgaagcacatgaagtccGatgagatccactggctgcac	12	11	0	3	rs140538134	byFrequency	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27277505	T	T	27277505	3	4	177	1	0	0	0	0	1	0	0	0	12869	1058	37	3	304	3	PTK2B	8	27277505	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	17099958	27277505	119086517	222	143812											
SNTG1	54212	broad.mit.edu	37	chr8	51664798	51664798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcatcttgaaatatccGtcatggccagaagaataaac	7	10	3	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51664798	T	T	51664798	1	4	177	0	1	0	0	0	0	0	0	0	14988	1160	40	3		3	SNTG1	8	51664798	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	24387293	51664798	94699224	223	143813											
CYP7B1	9420	broad.mit.edu	37	chr8	65537096	65537096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatggaggctcaccgggtctCctacaaggaaaaaaaaaaag	10	8	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65537096	A	A	65537096	3	1	177	1	0	0	0	0	1	0	0	0	4230	869	30	3	1417	3	CYP7B1	8	65537096	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	13872298	65537096	80826926	224	143814											
C8orf34	116328	broad.mit.edu	37	chr8	69688737	69688737	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaatcagtttatgatacagGatgaagcactcacttaggct	9	7	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69688737	T	T	69688737	1	4	177	0	1	0	0	0	0	0	0	0	2448	1189	41	3		3	C8orf34	8	69688737	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	4151641	69688737	76675285	225	143815											
PI15	51050	broad.mit.edu	37	chr8	75756215	75756215	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatttttttcccctacaGgtttgggatgaaaatcttgc	9	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75756215	T	T	75756215	5	4	177	1	0	0	0	0	0	0	1	0	11963	1014	35	2	279	2	PI15	8	75756215	Splice_Site	SNP	G	TCGA-55-1595-01A-01D-0969-08	6067478	75756215	70607807	226	143816											
CA3	761	broad.mit.edu	37	chr8	86352059	86352059	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccatggtctgtgtcttaTgatggtggctctgccaagac	12	10	3	2	rs141354884		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86352059	C	C	86352059	2	2	177	1	0	0	0	0	0	0	0	1	2543	1471	51	5		5	CA3	8	86352059	Silent	SNP	T	TCGA-55-1595-01A-01D-0969-08	10595844	86352059	60011963	227	143817											
CNBD1	168975	broad.mit.edu	37	chr8	88249177	88249177	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatggattttatgtaatacTgaaaggcctagctcgacctc	9	8	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88249177	A	A	88249177	3	1	177	1	0	0	0	0	1	0	0	0	3623	1580	55	5	630	5	CNBD1	8	88249177	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	1897118	88249177	58114845	228	143818											
MMP16	4325	broad.mit.edu	37	chr8	89053837	89053837	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatggctttcacagtgctgGctgtgttgtccagtttgatg	12	8	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89053837	T	T	89053837	3	4	177	1	0	0	0	0	1	0	0	0	9748	1203	42	3	151	3	MMP16	8	89053837	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	804660	89053837	57310185	229	143819											
SNX31	169166	broad.mit.edu	37	chr8	101630017	101630017	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttttttttttttggaggcgGagtctcactctgttgcccag	10	8	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101630017	A	A	101630017	1	1	177	0	1	0	0	0	0	0	0	0	15015	1189	41	4		4	SNX31	8	101630017	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	12576180	101630017	44734005	230	143820											
KCNV1	27012	broad.mit.edu	37	chr8	110980325	110980325	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaaattaattcaaaaccAgaaatcatctcccccgctgc	4	12	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110980325	G	G	110980325	3	3	177	1	0	0	0	0	1	0	0	0	8164	188	7	5	11	5	KCNV1	8	110980325	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	9350308	110980325	35383697	231	143821											
CSMD3	114788	broad.mit.edu	37	chr8	113246620	113246620	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccattgcccaattttcttCcttcattttcttcacagaag	3	12	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113246620	A	A	113246620	4	1	177	1	0	0	0	0	0	1	0	0	3980	864	30	3	425	3	CSMD3	8	113246620	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	2266295	113246620	33117402	232	143822											
CSMD3	114788	broad.mit.edu	37	chr8	113987938	113987938	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactatccatatttttcagCtactttgaactttttctttt	2	8	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113987938	T	T	113987938	1	4	177	0	1	0	0	0	0	0	0	0	3980	812	28	4		4	CSMD3	8	113987938	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	741318	113987938	32376084	233	143823											
CSMD3	114788	broad.mit.edu	37	chr8	114111196	114111196	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacaagcatcttcagctgTtaaaaatgacaaaatattca	4	9	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114111196	C	C	114111196	1	2	177	0	1	0	0	0	0	0	0	0	3980	1740	60	5		5	CSMD3	8	114111196	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	123258	114111196	32252826	234	143824											
ENPP2	5168	broad.mit.edu	37	chr8	120605867	120605867	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctgatttctatccccatCttaaagaaagcggggatgag	11	9	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120605867	T	T	120605867	1	4	177	0	1	0	0	0	0	0	0	0	5172	928	32	4		4	ENPP2	8	120605867	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	6494671	120605867	25758155	235	143825											
OC90	729330	broad.mit.edu	37	chr8	133044267	133044267	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctgcatgttgtccccacTtcccaggtgcaggaaggtga	11	13	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133044267	A	A	133044267	3	1	177	1	0	0	0	0	1	0	0	0	10909	1609	56	5	553	5	OC90	8	133044267	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	12438400	133044267	13319755	236	143826											
FAM135B	51059	broad.mit.edu	37	chr8	139155445	139155445	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccactaaacactgtggcGcctactggggatgtgcctac	10	13	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139155445	A	A	139155445	1	1	177	0	1	0	0	0	0	0	0	0	5495	1102	38	4		4	FAM135B	8	139155445	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	6111178	139155445	7208577	237	143827											
COL22A1	169044	broad.mit.edu	37	chr8	139833476	139833476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtagtgtctgcaccagcGcacagtcaatgtgcagggag	15	9	2	0	rs141992049	byFrequency	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139833476	T	T	139833476	3	4	177	1	0	0	0	0	1	0	0	0	3713	1087	38	3	3968	3	COL22A1	8	139833476	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	678031	139833476	6530546	238	143828											
KDM4C	23081	broad.mit.edu	37	chr9	6814607	6814607	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgacttactggtttgtacAtttttgtcatctacctttta	5	8	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6814607	G	G	6814607	1	3	177	0	1	0	0	0	0	0	0	0	8200	232	8	5		5	KDM4C	9	6814607	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08		6814607	134398824	239	143829											
PTPRD	5789	broad.mit.edu	37	chr9	8492981	8492981	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagaaatgatcatgtccTgaaatgacaaaatagaatgt	8	7	1	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8492981	C	C	8492981	5	2	177	1	0	0	0	0	0	0	1	0	12907	1594	55	5	3538	5	PTPRD	9	8492981	Splice_Site	SNP	T	TCGA-55-1595-01A-01D-0969-08	1678374	8492981	132720450	240	143830											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18826354	18826354	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgcaccatctgcacgaagGctccttgctgctcacaaacg	8	17	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18826354	C	C	18826354	3	2	177	1	0	0	0	0	1	0	0	0	274	1203	42	4	4097	4	ADAMTSL1	9	18826354	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	10333373	18826354	122387077	241	143831											
PLIN2	123	broad.mit.edu	37	chr9	19119764	19119764	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttggtagacagggatcCcagtctaacataataacttg	9	8	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19119764	A	A	19119764	4	1	177	1	0	0	0	0	0	1	0	0	12185	632	22	2	664	2	PLIN2	9	19119764	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	293410	19119764	122093667	242	143832											
KIAA1797	54914	broad.mit.edu	37	chr9	20717802	20717802	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctttttaaggctgtgggtCatcttattgctgcagtccta	9	8	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20717802	T	T	20717802	3	4	177	1	0	0	0	0	1	0	0	0	8328	826	29	4	73	4	KIAA1797	9	20717802	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1598038	20717802	120495629	243	143833											
C9orf131	138724	broad.mit.edu	37	chr9	35045314	35045314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaggggaagatggtgagCcaggtcccatcccaagggcc	15	10	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35045314	A	A	35045314	3	1	177	1	0	0	0	0	1	0	0	0	2483	738	26	3	2710	3	C9orf131	9	35045314	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	14327512	35045314	106168117	244	143834											
UNC13B	10497	broad.mit.edu	37	chr9	35398839	35398839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctccagggacagtgtgtGtttggggagggaaaggctac	17	8	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35398839	T	T	35398839	1	4	177	0	1	0	0	0	0	0	0	0	17111	1392	48	3		3	UNC13B	9	35398839	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	353525	35398839	105814592	245	143835											
TPM2	7169	broad.mit.edu	37	chr9	35685011	35685011	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgagacggagggaaggTgagctgagagaaggcgccat	19	6	0	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35685011	A	A	35685011	1	1	177	0	1	0	0	0	0	0	0	0	16530	1711	59	5		5	TPM2	9	35685011	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	286172	35685011	105528420	246	143836											
TMC1	117531	broad.mit.edu	37	chr9	75450879	75450879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaacagctgcagctgctgGtcgccagtaataagtatcct	11	10	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75450879	T	T	75450879	3	4	177	1	0	0	0	0	1	0	0	0	16107	1261	44	3	2351	3	TMC1	9	75450879	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	39765868	75450879	65762552	247	143837											
C9orf79	286234	broad.mit.edu	37	chr9	90499889	90499889	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttaggtggagaccccctgGgggacgtgtgtaaaccagtg	15	10	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90499889	C	C	90499889	3	2	177	1	0	0	0	0	1	0	0	0	2523	1232	43	4	501	4	C9orf79	9	90499889	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	15049010	90499889	50713542	248	143838											
COL15A1	1306	broad.mit.edu	37	chr9	101810095	101810095	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaccaccaggacataaaGgagaatttggccttcccggg	12	10	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101810095	A	A	101810095	3	1	177	1	0	0	0	0	1	0	0	0	3704	1001	35	4	2813	4	COL15A1	9	101810095	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	11310206	101810095	39403336	249	143839											
CYLC2	1539	broad.mit.edu	37	chr9	105767937	105767937	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaagaaggatgaaaagaagGatgcaaagaagaagggcaag	14	3	0	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105767937	C	C	105767937	3	2	177	1	0	0	0	0	1	0	0	0	4175	1174	41	4	1042	4	CYLC2	9	105767937	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	3957842	105767937	35445494	250	143840											
EPB41L4B	54566	broad.mit.edu	37	chr9	112025334	112025334	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagattaatgtaccttgTagacagagagcagctaattc	8	7	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112025334	C	C	112025334	2	2	177	1	0	0	0	0	0	0	0	1	5198	1625	57	5		5	EPB41L4B	9	112025334	Silent	SNP	T	TCGA-55-1595-01A-01D-0969-08	6257397	112025334	29188097	251	143841											
PTPN3	5774	broad.mit.edu	37	chr9	112144670	112144670	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcggaggagtcatcgggcaCaccgtggtcaggccatgcga	16	11	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112144670	G	G	112144670	3	3	177	1	0	0	0	0	1	0	0	0	12897	478	17	4	313	4	PTPN3	9	112144670	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	119336	112144670	29068761	252	143842											
RAB14	51552	broad.mit.edu	37	chr9	123954505	123954505	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctactcccatgtcccctGtttaaaaaaaaagaagtttc	4	11	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123954505	A	A	123954505	1	1	177	0	1	0	0	0	0	0	0	0	13008	1392	48	4		4	RAB14	9	123954505	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	11809835	123954505	17258926	253	143843											
TOR1B	27348	broad.mit.edu	37	chr9	132565422	132565422	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcggaagtgacgcacgagAggaagtccgtcctgccgctt	16	11	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132565422	T	T	132565422	1	4	177	0	1	0	0	0	0	0	0	0	16498	319	11	5		5	TOR1B	9	132565422	5'Flank	SNP	A	TCGA-55-1595-01A-01D-0969-08	8610917	132565422	8648009	254	143844											
SNAPC4	6621	broad.mit.edu	37	chr9	139276314	139276314	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggtctctgggaagcctgtGtgcagggcacgacaacgtcc	15	12	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139276314	A	A	139276314	3	1	177	1	0	0	0	0	1	0	0	0	14951	1377	48	4	2154	4	SNAPC4	9	139276314	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	6710892	139276314	1937117	255	143845											
ITIH5	80760	broad.mit.edu	37	chr10	7708826	7708826	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccacacacagggacagCcccaggcacagccccagcag	10	19	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7708826	A	A	7708826	2	1	177	1	0	0	0	0	0	0	0	1	7977	726	26	3		3	ITIH5	10	7708826	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08		7708826	127825921	256	143846											
PTER	9317	broad.mit.edu	37	chr10	16526805	16526805	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagagaccagggccatgtCagtggagcaggtaaaaagcc	13	10	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16526805	G	G	16526805	4	3	177	1	0	0	0	0	0	1	0	0	12845	838	29	4	424	4	PTER	10	16526805	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	8817979	16526805	119007942	257	143847											
ST8SIA6	338596	broad.mit.edu	37	chr10	17363044	17363044	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagttttagagaagggccAgaatccatacagcttcacat	8	9	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17363044	T	T	17363044	3	4	177	1	0	0	0	0	1	0	0	0	15354	188	7	5	170	5	ST8SIA6	10	17363044	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	836239	17363044	118171703	258	143848											
STAM	8027	broad.mit.edu	37	chr10	17737220	17737220	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttttaaagctggagaaatTattacagttcttgatgacag	8	5	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17737220	G	G	17737220	3	3	177	1	0	0	0	0	1	0	0	0	15366	1742	61	5	734	5	STAM	10	17737220	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	374176	17737220	117797527	259	143849											
KIAA1217	56243	broad.mit.edu	37	chr10	24762124	24762124	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaaacacgaatatcaaAgtcaactttctgatcccttg	5	10	4	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24762124	C	C	24762124	1	2	177	0	1	0	0	0	0	0	0	0	8286	87	3	5		5	KIAA1217	10	24762124	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	7024904	24762124	110772623	260	143850											
PARD3	56288	broad.mit.edu	37	chr10	34400356	34400356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcgttgaagccatgtcctCccaggtagccgttcctggag	13	12	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34400356	A	A	34400356	3	1	177	1	0	0	0	0	1	0	0	0	11537	855	30	3	262	3	PARD3	10	34400356	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	9638232	34400356	101134391	261	143851											
ANKRD30A	91074	broad.mit.edu	37	chr10	37454155	37454155	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cataaaatcagatgcttagtCtttattttctcacctctgca	4	10	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37454155	G	G	37454155	1	3	177	0	1	0	0	0	0	0	0	0	658	928	32	4		4	ANKRD30A	10	37454155	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	3053799	37454155	98080592	262	143852											
PCDH15	65217	broad.mit.edu	37	chr10	55782832	55782832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacaagttcatagtagtcCctgacttctctgttaagctt	6	10	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55782832	A	A	55782832	3	1	177	1	0	0	0	0	1	0	0	0	11605	622	22	2	5200	2	PCDH15	10	55782832	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	18328677	55782832	79751915	263	143853											
PCDH15	65217	broad.mit.edu	37	chr10	55996585	55996585	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttatcagatacaaaccaAcaaggatggaatagaggatt	9	5	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55996585	T	T	55996585	3	4	177	1	0	0	0	0	1	0	0	0	11605	43	2	5	6628	5	PCDH15	10	55996585	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	213753	55996585	79538162	264	143854											
ZWINT	11130	broad.mit.edu	37	chr10	58117829	58117829	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacacaactgagagagatcCagggattttaatccacagat	8	8	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58117829	A	A	58117829	1	1	177	0	1	0	0	0	0	0	0	0	18378	609	21	2		2	ZWINT	10	58117829	3'UTR	SNP	C	TCGA-55-1595-01A-01D-0969-08	2121244	58117829	77416918	265	143855											
ZNF365	22891	broad.mit.edu	37	chr10	64136074	64136074	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccagatttagaagcttgtCatccttgagggcccatctgg	10	10	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64136074	T	T	64136074	3	4	177	1	0	0	0	0	1	0	0	0	17995	838	29	4	124	4	ZNF365	10	64136074	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	6018245	64136074	71398673	266	143856											
DNA2	1763	broad.mit.edu	37	chr10	70191947	70191947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattaatcaaagcagacatGgtgattttagcatacccttt	6	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70191947	A	A	70191947	1	1	177	0	1	0	0	0	0	0	0	0	4636	1363	47	4		4	DNA2	10	70191947	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	6055873	70191947	65342800	267	143857											
C10orf11	83938	broad.mit.edu	37	chr10	78084271	78084271	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagctttttattgctctcAgtgggtgcagggagggacac	13	9	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78084271	T	T	78084271	1	4	177	0	1	0	0	0	0	0	0	0	1593	203	7	5		5	C10orf11	10	78084271	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	7892324	78084271	57450476	268	143858											
BTAF1	9044	broad.mit.edu	37	chr10	93773549	93773549	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggatgctcgaagctccagTcgagagcaagaagcaggtat	14	8	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93773549	A	A	93773549	3	1	177	1	0	0	0	0	1	0	0	0	1545	1664	58	5	4559	5	BTAF1	10	93773549	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	15689278	93773549	41761198	269	143859											
PLCE1	51196	broad.mit.edu	37	chr10	96064273	96064273	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaatgctgcaatgtttgaGgcaaatggtggttgtggtta	13	3	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96064273	A	A	96064273	2	1	177	1	0	0	0	0	0	0	0	1	12129	991	35	4		4	PLCE1	10	96064273	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	2290724	96064273	39470474	270	143860											
CYP2C9	1559	broad.mit.edu	37	chr10	96732014	96732014	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtcacaggtatgatcagaGatgataagttaattaatttt	9	3	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96732014	T	T	96732014	1	4	177	0	1	0	0	0	0	0	0	0	4201	957	33	3		3	CYP2C9	10	96732014	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	667741	96732014	38802733	271	143861											
SORCS3	22986	broad.mit.edu	37	chr10	106959944	106959944	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagtccgactgggtcttAtctgagccttcctatttagg	10	10	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106959944	T	T	106959944	1	4	177	0	1	0	0	0	0	0	0	0	15046	464	16	5		5	SORCS3	10	106959944	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	10227930	106959944	28574803	272	143862											
SORCS1	114815	broad.mit.edu	37	chr10	108432552	108432552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcatcctagttcctatacCttagcaactagctttccccc	5	15	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108432552	A	A	108432552	1	1	177	0	1	0	0	0	0	0	0	0	15044	696	24	2		2	SORCS1	10	108432552	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1472608	108432552	27102195	273	143863											
PNLIP	5406	broad.mit.edu	37	chr10	118320963	118320963	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgctcatgtatgtttttGttaacttcttaaatccttag	6	6	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118320963	T	T	118320963	1	4	177	0	1	0	0	0	0	0	0	0	12244	1392	48	3		3	PNLIP	10	118320963	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	9888411	118320963	17213784	274	143864											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122280329	122280329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgagctttttcccaaacGgctgtgtctagagtattctg	9	10	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122280329	T	T	122280329	1	4	177	0	1	0	0	0	0	0	0	0	12389	1131	39	1		1	PPAPDC1A	10	122280329	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3959366	122280329	13254418	275	143865											
DMBT1	1755	broad.mit.edu	37	chr10	124377722	124377722	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggaaatgcccagtttgGccagggctcaggacccattg	12	13	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124377722	T	T	124377722	3	4	177	1	0	0	0	0	1	0	0	0	4617	1203	42	3	4844	3	DMBT1	10	124377722	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2097393	124377722	11157025	276	143866											
OR51A2	401667	broad.mit.edu	37	chr11	4976851	4976851	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agatacatgctgcagatgggGatagagatccagatgtgtgc	14	6	0	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4976851	C	C	4976851	3	2	177	1	0	0	0	0	1	0	0	0	11180	1164	41	4	850	4	OR51A2	11	4976851	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08		4976851	130029665	277	143867											
OR51Q1	390061	broad.mit.edu	37	chr11	5443842	5443842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccattatgcctccatcCtcaccaatgaagtcattggt	5	15	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5443842	A	A	5443842	3	1	177	1	0	0	0	0	1	0	0	0	11198	681	24	2	414	2	OR51Q1	11	5443842	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	466991	5443842	129562674	278	143868											
CTR9	9646	broad.mit.edu	37	chr11	10772811	10772811	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttgtttaagcggctgacGggaaggagaagccagagctc	15	8	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10772811	T	T	10772811	1	4	177	0	1	0	0	0	0	0	0	0	4058	1130	39	1		1	CTR9	11	10772811	5'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	5328969	10772811	124233705	279	143869											
CCDC73	493860	broad.mit.edu	37	chr11	32635190	32635190	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttttctcagtttttttatCtgaagttgaaagatcaaagg	8	4	3	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32635190	A	A	32635190	3	1	177	1	0	0	0	0	1	0	0	0	2874	913	32	3	577	3	CCDC73	11	32635190	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	21862379	32635190	102371326	280	143870											
OR4C16	219428	broad.mit.edu	37	chr11	55340015	55340015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccatcataagccagtggGtctgtggtgttttgatggct	13	7	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55340015	T	T	55340015	3	4	177	1	0	0	0	0	1	0	0	0	11143	1261	44	3	414	3	OR4C16	11	55340015	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	22704825	55340015	79666501	281	143871											
OR5W2	390148	broad.mit.edu	37	chr11	55682036	55682036	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagaaaaaaatcagttaatGaggagcaattttcccagtcc	8	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55682036	T	T	55682036	4	4	177	1	0	0	0	0	0	1	0	0	11279	1294	45	3	911	3	OR5W2	11	55682036	Nonsense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	342021	55682036	79324480	282	143872											
OR5A1	219982	broad.mit.edu	37	chr11	59211049	59211049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcccccttctctacccCactatcatgacccagggcct	5	20	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59211049	A	A	59211049	2	1	177	1	0	0	0	0	0	0	0	1	11233	581	21	2		2	OR5A1	11	59211049	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	3529013	59211049	75795467	283	143873											
EML3	256364	broad.mit.edu	37	chr11	62375661	62375661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagcccctccaagccacaTggactcctcaccttgatctc	6	18	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62375661	A	A	62375661	1	1	177	0	1	0	0	0	0	0	0	0	5140	1479	51	5		5	EML3	11	62375661	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	3164612	62375661	72630855	284	143874											
SNX32	254122	broad.mit.edu	37	chr11	65618622	65618622	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggccgaccgcgtcatgcgcGcccacaagtgtacgcagggc	15	15	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65618622	C	C	65618622	3	2	177	1	0	0	0	0	1	0	0	0	15016	1087	38	4	726	4	SNX32	11	65618622	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	3242961	65618622	69387894	285	143875											
DPP3	10072	broad.mit.edu	37	chr11	66264589	66264589	+	Intron	DEL	G	-	-													aggaaggaggaagcatttgaGgggaggagaataagcagaaa							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66264589	-	-	66264589	6	5	177	0	1	1	0	1	0	0	0	0	4768	1015	35	0		0	DPP3	11	66264589	Intron	DEL	G	TCGA-55-1595-01A-01D-0969-08	645967	66264589	68741927	286	143876											
CCDC87	55231	broad.mit.edu	37	chr11	66358704	66358704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggtacttgaagtagtcatCcacagacaaggtggttttcc	11	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66358704	A	A	66358704	3	1	177	1	0	0	0	0	1	0	0	0	2890	855	30	3	770	3	CCDC87	11	66358704	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	94115	66358704	68647812	287	143877											
PC	5091	broad.mit.edu	37	chr11	66620019	66620019	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagcagtgactggtgggcGtccctgaaggtcgtgtccat	15	11	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66620019	A	A	66620019	2	1	177	1	0	0	0	0	0	0	0	1	11591	1136	40	4		4	PC	11	66620019	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	261315	66620019	68386497	288	143878											
ANO1	55107	broad.mit.edu	37	chr11	69972347	69972347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcagtacacagaggagcCctctcctgccatcccagctg	9	18	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69972347	A	A	69972347	1	1	177	0	1	0	0	0	0	0	0	0	695	638	22	2		2	ANO1	11	69972347	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	3352328	69972347	65034169	289	143879											
FOLH1B	219595	broad.mit.edu	37	chr11	89423997	89423997	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagtaaatatggtgctaatCatttttttgtaagctatcct	6	5	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89423997	G	G	89423997	1	3	177	0	1	0	0	0	0	0	0	0	6038	841	29	4		4	FOLH1B	11	89423997	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	19451650	89423997	45582519	290	143880											
ATM	472	broad.mit.edu	37	chr11	108115735	108115735	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatccatcatccgaaaggaGccaaaacccaagaaaaaggt	7	10	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108115735	C	C	108115735	3	2	177	1	0	0	0	0	1	0	0	0	1113	971	34	4	905	4	ATM	11	108115735	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	18691738	108115735	26890781	291	143881											
ATM	472	broad.mit.edu	37	chr11	108186770	108186770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacacgaagcaatgtgggGcaaagccctagtaacatatg	11	8	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108186770	T	T	108186770	3	4	177	1	0	0	0	0	1	0	0	0	1113	1203	42	3	6290	3	ATM	11	108186770	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	71035	108186770	26819746	292	143882											
ABCG4	64137	broad.mit.edu	37	chr11	119024706	119024706	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctctgttcactgcagcctGactaaaaattcctccccacc	4	17	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119024706	C	C	119024706	1	2	177	0	1	0	0	0	0	0	0	0	70	1305	45	4		4	ABCG4	11	119024706	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	10837936	119024706	15981810	293	143883											
NLRX1	79671	broad.mit.edu	37	chr11	119045416	119045416	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccagatagccgctgcctgCttcctgccgtcctattgctg	9	16	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119045416	G	G	119045416	3	3	177	1	0	0	0	0	1	0	0	0	10580	805	28	4	1122	4	NLRX1	11	119045416	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	20710	119045416	15961100	294	143884											
RAD51AP1	10635	broad.mit.edu	37	chr12	4662122	4662122	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctcactttttagagcaaaGatgaactatataatcttctg	5	8	3	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4662122	A	A	4662122	1	1	177	0	1	0	0	0	0	0	0	0	13094	957	33	4		4	RAD51AP1	12	4662122	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08		4662122	129189773	295	143885											
M6PR	4074	broad.mit.edu	37	chr12	9094325	9094325	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaatagtaagggtgagatgAgggactggagttgagactgc	17	4	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9094325	T	T	9094325	1	4	177	0	1	0	0	0	0	0	0	0	9228	319	11	5		5	M6PR	12	9094325	3'UTR	SNP	A	TCGA-55-1595-01A-01D-0969-08	4432203	9094325	124757570	296	143886											
KLRF1	51348	broad.mit.edu	37	chr12	9985974	9985974	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatgaggacactggagatcTaaaagtgaataatggcacaa	11	5	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9985974	C	C	9985974	3	2	177	1	0	0	0	0	1	0	0	0	8491	1522	53	5	270	5	KLRF1	12	9985974	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	891649	9985974	123865921	297	143887											
PRB4	5545	broad.mit.edu	37	chr12	11083047	11083047	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacagttttctcccaaccttGattctggggaccatgagtaa	8	10	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11083047	A	A	11083047	1	1	177	0	1	0	0	0	0	0	0	0	12551	1305	45	4		4	PRB4	12	11083047	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1097073	11083047	122768848	298	143888											
PIK3C2G	5288	broad.mit.edu	37	chr12	18435041	18435041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atattcttggcaaacggatcCaaatcctaatgaatcacacg	6	10	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18435041	A	A	18435041	3	1	177	1	0	0	0	0	1	0	0	0	12006	594	21	2	28	2	PIK3C2G	12	18435041	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	7351994	18435041	115416854	299	143889											
PDE3A	5139	broad.mit.edu	37	chr12	20787795	20787795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatgagccccctttcccCattgtagatcttgtaataag	6	10	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20787795	A	A	20787795	1	1	177	0	1	0	0	0	0	0	0	0	11731	609	21	2		2	PDE3A	12	20787795	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2352754	20787795	113064100	300	143890											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	177	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	4610490	25398285	108453610	301	143891											
IFLTD1	160492	broad.mit.edu	37	chr12	25679179	25679179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaattgttaatgacaaatGccactggagttgaacacaat	7	6	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25679179	A	A	25679179	1	1	177	0	1	0	0	0	0	0	0	0	7600	1334	46	4		4	IFLTD1	12	25679179	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	280894	25679179	108172716	302	143892											
C12orf11	55726	broad.mit.edu	37	chr12	27070649	27070649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagccttctcgactgccgcCacctagatgcgaatcacctt	8	16	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27070649	A	A	27070649	3	1	177	1	0	0	0	0	1	0	0	0	1688	594	21	2	1249	2	C12orf11	12	27070649	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1391470	27070649	106781246	303	143893											
CCDC91	55297	broad.mit.edu	37	chr12	28458532	28458532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaacctgttccctctctGttttctctttaataatccta	2	12	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28458532	T	T	28458532	1	4	177	0	1	0	0	0	0	0	0	0	2898	1392	48	3		3	CCDC91	12	28458532	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1387883	28458532	105393363	304	143894											
ADCY6	112	broad.mit.edu	37	chr12	49171215	49171216	+	Missense_Mutation	DNP	GC	AA	AA													cagccagcttgtcaaaccggGcaaagagctcattcagggtc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	49171216	AA	AA	49171215	3	1	177	1	0	0	0	0	1	0	0	0	298	1203	42	4	2352	4	ADCY6	12	49171215	Missense_Mutation	DNP	GC	TCGA-55-1595-01A-01D-0969-08	20712683	49171215	84680680	305	143895											
KRT6A	3853	broad.mit.edu	37	chr12	52882427	52882427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgaaggggccaggagccCagaattgatggtgaatgagc	16	6	0	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52882427	A	A	52882427	1	1	177	0	1	0	0	0	0	0	0	0	8551	609	21	2		2	KRT6A	12	52882427	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	3711212	52882427	80969468	306	143896											
NCKAP1L	3071	broad.mit.edu	37	chr12	54905485	54905485	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcgttagccaccacccCttgccaaaagttagttttga	8	11	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54905485	G	G	54905485	1	3	177	0	1	0	0	0	0	0	0	0	10317	696	24	4		4	NCKAP1L	12	54905485	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2023058	54905485	78946410	307	143897											
DCD	117159	broad.mit.edu	37	chr12	55039440	55039440	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgcctgtctggctaacCctgggtcttcacctgcattt	10	12	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55039440	T	T	55039440	3	4	177	1	0	0	0	0	1	0	0	0	4316	623	22	4	195	4	DCD	12	55039440	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	133955	55039440	78812455	308	143898											
OR10A7	121364	broad.mit.edu	37	chr12	55615680	55615680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaaaccccatcatctacgGcctgaggaacaatgaagtga	9	11	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55615680	T	T	55615680	3	4	177	1	0	0	0	0	1	0	0	0	10989	1203	42	3	874	3	OR10A7	12	55615680	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	576240	55615680	78236215	309	143899											
TMEM194A	23306	broad.mit.edu	37	chr12	57457866	57457866	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacttacttaaaagatactGccagtaacacctccagatct	4	12	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57457866	A	A	57457866	4	1	177	1	0	0	0	0	0	1	0	0	16239	1328	46	4	608	4	TMEM194A	12	57457866	Nonsense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1842186	57457866	76394029	310	143900											
ARHGAP9	64333	broad.mit.edu	37	chr12	57870900	57870900	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaagtcataacaagctggCtttttctgcatgtgactggg	11	7	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57870900	T	T	57870900	1	4	177	0	1	0	0	0	0	0	0	0	891	812	28	4		4	ARHGAP9	12	57870900	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	413034	57870900	75980995	311	143901											
PIP4K2C	79837	broad.mit.edu	37	chr12	57984953	57984953	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcctgcctcgccctgttcGcgcgtccgctgtccggcctc	11	20	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57984953	A	A	57984953	1	1	177	0	1	0	0	0	0	0	0	0	12033	1102	38	4		4	PIP4K2C	12	57984953	5'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	114053	57984953	75866942	312	143902											
TSPAN8	7103	broad.mit.edu	37	chr12	71533740	71533740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagtcctgtgccaggacCctgaaatacatcagtgatct	9	11	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71533740	A	A	71533740	1	1	177	0	1	0	0	0	0	0	0	0	16778	638	22	2		2	TSPAN8	12	71533740	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	13548787	71533740	62318155	313	143903											
RFX4	5992	broad.mit.edu	37	chr12	107047992	107047992	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattttttgctcattgggcGtttatttccctaggctggag	10	8	1	0	rs149153430	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107047992	T	T	107047992	1	4	177	0	1	0	0	0	0	0	0	0	13373	1160	40	3		3	RFX4	12	107047992	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	35514252	107047992	26803903	314	143904											
RPH3A	22895	broad.mit.edu	37	chr12	113333615	113333615	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcaaacacagtgacctgGcaaagaagtcactggacatt	8	10	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113333615	A	A	113333615	3	1	177	1	0	0	0	0	1	0	0	0	13662	1203	42	4	1965	4	RPH3A	12	113333615	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	6285623	113333615	20518280	315	143905											
SRRM4	84530	broad.mit.edu	37	chr12	119552205	119552205	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagataaaacctgtaagaTgcaggcagggacaaaatatg	13	5	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119552205	C	C	119552205	1	2	177	0	1	0	0	0	0	0	0	0	15289	1479	51	5		5	SRRM4	12	119552205	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	6218590	119552205	14299690	316	143906											
GCN1L1	10985	broad.mit.edu	37	chr12	120595817	120595817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactaaggagaaggctggcgCggacaagggcgcagcacctg	17	10	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120595817	A	A	120595817	3	1	177	1	0	0	0	0	1	0	0	0	6361	768	27	3	5224	3	GCN1L1	12	120595817	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1043612	120595817	13256078	317	143907											
ORAI1	84876	broad.mit.edu	37	chr12	122064965	122064965	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcgccatggtgagctcCggccgccctgccctgccccc	12	20	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122064965	T	T	122064965	1	4	177	0	1	0	0	0	0	0	0	0	11351	667	23	4		4	ORAI1	12	122064965	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1469148	122064965	11786930	318	143908											
PIWIL1	9271	broad.mit.edu	37	chr12	130839197	130839197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctcattcctgagctctGctatcttacaggtactgttg	8	11	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130839197	T	T	130839197	3	4	177	1	0	0	0	0	1	0	0	0	12052	1319	46	3	1194	3	PIWIL1	12	130839197	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	8774232	130839197	3012698	319	143909											
GALNT9	50614	broad.mit.edu	37	chr12	132682499	132682499	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccatcagcgctgtaccgCaccagctggggacaggacca	12	14	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132682499	A	A	132682499	2	1	177	1	0	0	0	0	0	0	0	1	6282	697	25	3		3	GALNT9	12	132682499	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	1843302	132682499	1169396	320	143910											
FLT1	2321	broad.mit.edu	37	chr13	28919716	28919716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaaatcacaatagtgGtgcaacaaagaaattcccaa	6	7	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28919716	T	T	28919716	1	4	177	0	1	0	0	0	0	0	0	0	5999	1276	44	3		3	FLT1	13	28919716	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08		28919716	86250162	321	143911											
MTUS2	23281	broad.mit.edu	37	chr13	29598927	29598927	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taataatgaaagcatcttaaGtctgggagatacgaatgcca	9	6	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29598927	C	C	29598927	3	2	177	1	0	0	0	0	1	0	0	0	10060	1029	36	4	124	4	MTUS2	13	29598927	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	679211	29598927	85570951	322	143912											
CPB2	1361	broad.mit.edu	37	chr13	46632576	46632576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatagtactgtaatttgtgGtttcccagacaacgtattct	7	8	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46632576	T	T	46632576	1	4	177	0	1	0	0	0	0	0	0	0	3829	1276	44	3		3	CPB2	13	46632576	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	17033649	46632576	68537302	323	143913											
STK24	8428	broad.mit.edu	37	chr13	99116093	99116093	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccttagcagtgggtctctGgaaaaacacacccaacaatt	7	12	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99116093	A	A	99116093	1	1	177	0	1	0	0	0	0	0	0	0	15411	1363	47	4		4	STK24	13	99116093	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	52483517	99116093	16053785	324	143914											
MYO16	23026	broad.mit.edu	37	chr13	109535429	109535429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcccagctgtatttcagctCctcagggaagctgtgttcct	10	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109535429	A	A	109535429	3	1	177	1	0	0	0	0	1	0	0	0	10158	855	30	3	1428	3	MYO16	13	109535429	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	10419336	109535429	5634449	325	143915											
CHD8	57680	broad.mit.edu	37	chr14	21868347	21868347	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagtgcttcttataactttCatcttggaacaaagtgtcag	7	8	4	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21868347	A	A	21868347	4	1	177	1	0	0	0	0	0	1	0	0	3362	835	29	3	3115	3	CHD8	14	21868347	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08		21868347	85481193	326	143916											
TOX4	9878	broad.mit.edu	37	chr14	21955827	21955827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgatggagcagggcggggGgctcctgagtgggggcttga	21	7	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21955827	T	T	21955827	3	4	177	1	0	0	0	0	1	0	0	0	16504	1232	43	2	303	2	TOX4	14	21955827	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	87480	21955827	85393713	327	143917											
OR4E2	26686	broad.mit.edu	37	chr14	22133769	22133770	+	Missense_Mutation	DNP	GG	TT	TT													gggtactgttcactcactagGgcagaccttcttgactattc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22133770	TT	TT	22133769	3	4	177	1	0	0	0	0	1	0	0	0	11154	1232	43	2	475	2	OR4E2	14	22133769	Missense_Mutation	DNP	GG	TCGA-55-1595-01A-01D-0969-08	177942	22133769	85215771	328	143918											
HECTD1	25831	broad.mit.edu	37	chr14	31585353	31585353	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaataaaaacaaaatcttTtctgttcctataatccaaaa	2	8	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31585353	C	C	31585353	1	2	177	0	1	0	0	0	0	0	0	0	7106	1856	64	5		5	HECTD1	14	31585353	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	9451584	31585353	75764187	329	143919											
LRFN5	145581	broad.mit.edu	37	chr14	42367975	42367975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgcaattaacccatgaaCtggtaagttttttaaaaaaa	5	5	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42367975	A	A	42367975	1	1	177	0	1	0	0	0	0	0	0	0	9028	580	20	3		3	LRFN5	14	42367975	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	10782622	42367975	64981565	330	143920											
CGRRF1	10668	broad.mit.edu	37	chr14	55004904	55004904	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagtgaagttgagccatcgGaagagaacagcaaggactgt	13	6	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55004904	T	T	55004904	4	4	177	1	0	0	0	0	0	1	0	0	3336	1175	41	3	824	3	CGRRF1	14	55004904	Nonsense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	12636929	55004904	52344636	331	143921											
LTBP2	4053	broad.mit.edu	37	chr14	74999213	74999213	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggtattcacacactccgCgtccttgcacaggcccaggg	10	16	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74999213	G	G	74999213	3	3	177	1	0	0	0	0	1	0	0	0	9161	768	27	4	3670	4	LTBP2	14	74999213	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	19994309	74999213	32350327	332	143922											
VASH1	22846	broad.mit.edu	37	chr14	77237618	77237618	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggccagtcctctgccCcagggctggcttggagcttc	16	13	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77237618	T	T	77237618	1	4	177	0	1	0	0	0	0	0	0	0	17252	638	22	4		4	VASH1	14	77237618	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2238405	77237618	30111922	333	143923											
C14orf68	283600	broad.mit.edu	37	chr14	100795911	100795911	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactcaattgctgccgcgccTtccctgtcaacatggtggtc	9	14	2	0	rs150644466		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100795911	G	G	100795911	3	3	177	1	0	0	0	0	1	0	0	0	1791	1609	56	5	878	5	C14orf68	14	100795911	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	23558293	100795911	6553629	334	143924											
C14orf68	283600	broad.mit.edu	37	chr14	100795933	100795933	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtcaacatggtggtctTcgtcgcctatgaggcagtgc	12	12	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100795933	G	G	100795933	3	3	177	1	0	0	0	0	1	0	0	0	1791	1783	62	5	900	5	C14orf68	14	100795933	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	22	100795933	6553607	335	143925											
DIO3	1735	broad.mit.edu	37	chr14	102027869	102027869	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtcgcggttggtggtcggAgagggcgaggggtcccaggg	22	8	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102027869	G	G	102027869	1	3	177	0	1	0	0	0	0	0	0	0	4566	291	11	5		5	DIO3	14	102027869	5'UTR	SNP	A	TCGA-55-1595-01A-01D-0969-08	1231936	102027869	5321671	336	143926											
RAGE	5891	broad.mit.edu	37	chr14	102717219	102717219	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtagaacccatcagtgaGgagacactccggggcccggt	14	12	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102717219	A	A	102717219	3	1	177	1	0	0	0	0	1	0	0	0	13114	1000	35	4	763	4	RAGE	14	102717219	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	689350	102717219	4632321	337	143927											
BTBD6	90135	broad.mit.edu	37	chr14	105716678	105716678	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgcagggctgggcctgtAtggctccagctctgggaagg	16	9	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105716678	G	G	105716678	3	3	177	1	0	0	0	0	1	0	0	0	1555	449	16	5	1141	5	BTBD6	14	105716678	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	2999459	105716678	1632862	338	143928											
MKRN3	7681	broad.mit.edu	37	chr15	23811332	23811332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagggtggcgtttcgccgCctggggcctctgcaggtgga	18	11	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23811332	A	A	23811332	3	1	177	1	0	0	0	0	1	0	0	0	9701	739	26	3	405	3	MKRN3	15	23811332	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08		23811332	78720060	339	143929											
RYR3	6263	broad.mit.edu	37	chr15	33955695	33955695	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcatgctagcagcctcaCcaaagtacacaaagtgttat	9	10	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33955695	A	A	33955695	1	1	177	0	1	0	0	0	0	0	0	0	13881	522	18	3		3	RYR3	15	33955695	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	10144363	33955695	68575697	340	143930											
MEIS2	4212	broad.mit.edu	37	chr15	37187564	37187564	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacgttatagcaacaatGtggttggcactctacaaatg	9	7	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37187564	A	A	37187564	1	1	177	0	1	0	0	0	0	0	0	0	9561	1392	48	4		4	MEIS2	15	37187564	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3231869	37187564	65343828	341	143931											
ADAL	161823	broad.mit.edu	37	chr15	43635170	43635170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgatctctttacatgtAttttctatgtgtcctttcta	5	7	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43635170	G	G	43635170	1	3	177	0	1	0	0	0	0	0	0	0	233	464	16	5		5	ADAL	15	43635170	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	6447606	43635170	58896222	342	143932											
DUOX2	50506	broad.mit.edu	37	chr15	45394000	45394000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacactcaccatttccacCtccacctccacctttgacac	1	21	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45394000	A	A	45394000	3	1	177	1	0	0	0	0	1	0	0	0	4841	681	24	2	1860	2	DUOX2	15	45394000	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1758830	45394000	57137392	343	143933											
MYO5C	55930	broad.mit.edu	37	chr15	52539167	52539167	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcgaacgtagtggggcgtCgtcgcattgagggtctccat	14	10	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52539167	A	A	52539167	2	1	177	1	0	0	0	0	0	0	0	1	10174	871	31	3		3	MYO5C	15	52539167	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	7145167	52539167	49992225	344	143934											
KIAA1370	56204	broad.mit.edu	37	chr15	52902417	52902417	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctcataaaggccaatatTagtgtgaatactgcacgtca	7	8	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52902417	C	C	52902417	3	2	177	1	0	0	0	0	1	0	0	0	8296	1754	61	5	2568	5	KIAA1370	15	52902417	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	363250	52902417	49628975	345	143935											
UNC13C	440279	broad.mit.edu	37	chr15	54307398	54307398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcgaagtcaaagtgaattGcaaagtgatgattcagagga	11	4	2	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54307398	T	T	54307398	3	4	177	1	0	0	0	0	1	0	0	0	17112	1310	46	3	2300	3	UNC13C	15	54307398	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1404981	54307398	48223994	346	143936											
IGDCC3	9543	broad.mit.edu	37	chr15	65622572	65622572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtggcacatgctatctcaCcccattactttcccggcttc	7	16	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65622572	A	A	65622572	1	1	177	0	1	0	0	0	0	0	0	0	7638	522	18	3		3	IGDCC3	15	65622572	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	11315174	65622572	36908820	347	143937											
SMAD3	4088	broad.mit.edu	37	chr15	67358475	67358475	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggggcgctcctcgccgccCgcgcgccctccccagccatg	13	22	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67358475	T	T	67358475	1	4	177	0	1	0	0	0	0	0	0	0	14873	667	23	4		4	SMAD3	15	67358475	5'UTR	SNP	C	TCGA-55-1595-01A-01D-0969-08	1735903	67358475	35172917	348	143938											
SNX33	257364	broad.mit.edu	37	chr15	75942210	75942210	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catctcctacaagctcacacCcacccatgctgcctcacccg	4	21	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75942210	G	G	75942210	3	3	177	1	0	0	0	0	1	0	0	0	15017	623	22	4	769	4	SNX33	15	75942210	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	8583735	75942210	26589182	349	143939											
NTRK3	4916	broad.mit.edu	37	chr15	88476321	88476321	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccatcgccgcacactccaTagaacttgacaatgtgctca	6	16	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88476321	A	A	88476321	3	1	177	1	0	0	0	0	1	0	0	0	10803	1406	49	5	728	5	NTRK3	15	88476321	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	12534111	88476321	14055071	350	143940											
ALDH1A3	220	broad.mit.edu	37	chr15	101425676	101425676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagacagaactggcctatcCtgggggcagggcctgggcta	15	10	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101425676	A	A	101425676	1	1	177	0	1	0	0	0	0	0	0	0	492	696	24	2		2	ALDH1A3	15	101425676	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	12949355	101425676	1105716	351	143941											
CACNA1H	8912	broad.mit.edu	37	chr16	1260867	1260867	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgggctgctggtgctGgtgtccctggtggacattgt	17	8	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1260867	T	T	1260867	2	4	177	1	0	0	0	0	0	0	0	1	2571	1335	47	2		2	CACNA1H	16	1260867	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08		1260867	89093886	352	143942											
MYH11	4629	broad.mit.edu	37	chr16	15826687	15826687	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatcaccacccctctcTagctgtgtgaccttgggtca	7	16	4	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15826687	A	A	15826687	1	1	177	0	1	0	0	0	0	0	0	0	10125	1537	53	5		5	MYH11	16	15826687	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	14565820	15826687	74528066	353	143943											
ABCC6	368	broad.mit.edu	37	chr16	16284195	16284195	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagagctggtgagccgtgcCcgtgagtccttctgcctcat	12	12	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16284195	A	A	16284195	2	1	177	1	0	0	0	0	0	0	0	1	57	610	22	2		2	ABCC6	16	16284195	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	457508	16284195	74070558	354	143944											
GPR139	124274	broad.mit.edu	37	chr16	20043689	20043689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaatgactttccgggtgcGggctgggtatgagaccgtgt	15	8	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043689	T	T	20043689	3	4	177	1	0	0	0	0	1	0	0	0	6713	1116	39	1	635	1	GPR139	16	20043689	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	3759494	20043689	70311064	355	143945											
UMOD	7369	broad.mit.edu	37	chr16	20359462	20359462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtcatacccatatggccCcaatctcacaggggaggaat	10	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20359462	A	A	20359462	1	1	177	0	1	0	0	0	0	0	0	0	17105	638	22	2		2	UMOD	16	20359462	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	315773	20359462	69995291	356	143946											
ACSM5	54988	broad.mit.edu	37	chr16	20442600	20442600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggggaatgttgccgtccGtatcagacccactcggccct	12	13	1	2	rs144464842	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20442600	T	T	20442600	3	4	177	1	0	0	0	0	1	0	0	0	187	1145	40	3	1299	3	ACSM5	16	20442600	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	83138	20442600	69912153	357	143947											
OTOA	146183	broad.mit.edu	37	chr16	21698670	21698670	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgttgcaatgtgtggtccCtcccagggcttccaaattga	10	11	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21698670	T	T	21698670	1	4	177	0	1	0	0	0	0	0	0	0	11396	696	24	4		4	OTOA	16	21698670	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1256070	21698670	68656083	358	143948											
OTOA	146183	broad.mit.edu	37	chr16	21739772	21739772	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaggagcggctgggtttGgcttttggtggtgtggtatg	21	3	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21739772	A	A	21739772	1	1	177	0	1	0	0	0	0	0	0	0	11396	1363	47	4		4	OTOA	16	21739772	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	41102	21739772	68614981	359	143949											
ERN2	10595	broad.mit.edu	37	chr16	23721647	23721647	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaattccttccaatttctCagctactaggagcctgttct	5	13	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23721647	A	A	23721647	1	1	177	0	1	0	0	0	0	0	0	0	5280	841	29	3		3	ERN2	16	23721647	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1981875	23721647	66633106	360	143950											
CORO1A	11151	broad.mit.edu	37	chr16	30198429	30198429	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgacactgggcccagaggTgcacccagacacgatctaca	11	14	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30198429	C	C	30198429	3	2	177	1	0	0	0	0	1	0	0	0	3785	1696	59	5	535	5	CORO1A	16	30198429	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	6476782	30198429	60156324	361	143951											
PRR14	78994	broad.mit.edu	37	chr16	30664596	30664596	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgtctttggcgtgaacccAagcagctatccgggaactga	11	11	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30664596	G	G	30664596	1	3	177	0	1	0	0	0	0	0	0	0	12692	145	5	5		5	PRR14	16	30664596	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	466167	30664596	59690157	362	143952											
TRIM72	493829	broad.mit.edu	37	chr16	31234408	31234408	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcctctggactgccgcTgcagtcctctaacctgtgtt	9	14	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31234408	A	A	31234408	1	1	177	0	1	0	0	0	0	0	0	0	16670	1595	55	5		5	TRIM72	16	31234408	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	569812	31234408	59120345	363	143953											
ITGAX	3687	broad.mit.edu	37	chr16	31374029	31374029	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgtcatcttcacccaGgtgtccaggcaatggaggat	12	10	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31374029	C	C	31374029	3	2	177	1	0	0	0	0	1	0	0	0	7959	991	35	4	1360	4	ITGAX	16	31374029	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	139621	31374029	58980724	364	143954											
ITGAD	3681	broad.mit.edu	37	chr16	31427913	31427913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggattcctacggaaccgtGgtcagcctctactatccagc	10	13	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31427913	T	T	31427913	2	4	177	1	0	0	0	0	0	0	0	1	7954	1335	47	2		2	ITGAD	16	31427913	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	53884	31427913	58926840	365	143955											
AMFR	267	broad.mit.edu	37	chr16	56448086	56448086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtattcatggaacttttcCacacatctgaaatcataata	4	8	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56448086	A	A	56448086	1	1	177	0	1	0	0	0	0	0	0	0	571	609	21	2		2	AMFR	16	56448086	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	25020173	56448086	33906667	366	143956											
CDH8	1006	broad.mit.edu	37	chr16	61854900	61854900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaaagtgctgttccatctCcatcgatgatatcatatgat	6	9	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61854900	A	A	61854900	3	1	177	1	0	0	0	0	1	0	0	0	3146	855	30	3	1474	3	CDH8	16	61854900	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	5406814	61854900	28499853	367	143957											
EDC4	23644	broad.mit.edu	37	chr16	67918040	67918040	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcatggcctcgtgacccccAgcctcccttagctgctaagc	9	17	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67918040	T	T	67918040	3	4	177	1	0	0	0	0	1	0	0	0	4948	188	7	5	4309	5	EDC4	16	67918040	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	6063140	67918040	22436713	368	143958											
SLC7A6OS	84138	broad.mit.edu	37	chr16	68338173	68338173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacacacacacgcatgacCcaaaacatgatgttccaaga	5	12	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68338173	A	A	68338173	1	1	177	0	1	0	0	0	0	0	0	0	14816	638	22	2		2	SLC7A6OS	16	68338173	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	420133	68338173	22016580	369	143959											
AARS	16	broad.mit.edu	37	chr16	70310248	70310248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgggttcaagcgattctcTagcctcactcctccccatgt	7	16	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70310248	C	C	70310248	1	2	177	0	1	0	0	0	0	0	0	0	19	1537	53	5		5	AARS	16	70310248	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	1972075	70310248	20044505	370	143960											
PMFBP1	83449	broad.mit.edu	37	chr16	72184552	72184552	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcaacatcttcacttgGcattctagtaactcgatgtt	6	12	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72184552	A	A	72184552	2	1	177	1	0	0	0	0	0	0	0	1	12229	1195	42	4		4	PMFBP1	16	72184552	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	1874304	72184552	18170201	371	143961											
CDYL2	124359	broad.mit.edu	37	chr16	80642134	80642134	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacagcatctcattggccTgaaaaagcaaaagcaggcaa	9	9	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80642134	A	A	80642134	5	1	177	1	0	0	0	0	0	0	1	0	3216	1594	55	5	311	5	CDYL2	16	80642134	Splice_Site	SNP	T	TCGA-55-1595-01A-01D-0969-08	8457582	80642134	9712619	372	143962											
KLHDC4	54758	broad.mit.edu	37	chr16	87742994	87742994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatagacgtagagcacccCatgcttcacagccagcatgg	9	15	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87742994	T	T	87742994	3	4	177	1	0	0	0	0	1	0	0	0	8429	594	21	4	246	4	KLHDC4	16	87742994	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	7100860	87742994	2611759	373	143963											
ZC3H18	124245	broad.mit.edu	37	chr16	88644074	88644074	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaaggaatccctggaGgctgccaaggagaaaaagaa	14	6	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88644074	A	A	88644074	2	1	177	1	0	0	0	0	0	0	0	1	17694	991	35	4		4	ZC3H18	16	88644074	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	901080	88644074	1710679	374	143964											
ACSF3	197322	broad.mit.edu	37	chr16	89178685	89178685	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagcccactttctcgttcaGaaagtcttaaagatcaacag	7	10	4	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89178685	T	T	89178685	1	4	177	0	1	0	0	0	0	0	0	0	176	957	33	3		3	ACSF3	16	89178685	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	534611	89178685	1176068	375	143965											
DPEP1	1800	broad.mit.edu	37	chr16	89703136	89703136	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgggctgtggtcaggaggGagggggcagacactccctgc	18	12	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89703136	T	T	89703136	1	4	177	0	1	0	0	0	0	0	0	0	4753	1189	41	3		3	DPEP1	16	89703136	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	524451	89703136	651617	376	143966											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2861283	2861283	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cggagcactttgggaagactCctgcggagggacagggagga	18	8	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2861283	G	G	2861283	1	3	177	0	1	0	0	0	0	0	0	0	13146	870	30	4		4	RAP1GAP2	17	2861283	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08		2861283	78333927	377	143967											
YBX2	51087	broad.mit.edu	37	chr17	7193535	7193535	+	Intron	DEL	G	-	-													cccactcctctcctgaacttGgggaactggctcccatattc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7193535	-	-	7193535	6	5	177	0	1	1	0	1	0	0	0	0	17597	1363	47	0		0	YBX2	17	7193535	Intron	DEL	G	TCGA-55-1595-01A-01D-0969-08	4332252	7193535	74001675	378	143968											
PIK3R6	146850	broad.mit.edu	37	chr17	8732033	8732033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgcagccctgggggcccGtcccagctgccaggcatcaa	14	16	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8732033	T	T	8732033	3	4	177	1	0	0	0	0	1	0	0	0	12018	1136	40	3	1139	3	PIK3R6	17	8732033	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1538498	8732033	72463177	379	143969											
MYH1	4619	broad.mit.edu	37	chr17	10415291	10415291	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagctttggccagagcaccCactgcattgtacaccttcac	7	15	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10415291	A	A	10415291	2	1	177	1	0	0	0	0	0	0	0	1	10123	581	21	2		2	MYH1	17	10415291	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	1683258	10415291	70779919	380	143970											
DNAH9	1770	broad.mit.edu	37	chr17	11572653	11572653	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacttcctgccacacactgGtgtaacctgcctgccgttgt	9	14	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11572653	T	T	11572653	1	4	177	0	1	0	0	0	0	0	0	0	4648	1276	44	3		3	DNAH9	17	11572653	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1157362	11572653	69622557	381	143971											
SREBF1	6720	broad.mit.edu	37	chr17	17722973	17722973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtgcaaggagacgggcGggacccctggcggggaagcc	21	10	0	1	rs114001633	byFrequency;by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17722973	T	T	17722973	3	4	177	1	0	0	0	0	1	0	0	0	15259	1116	39	1	2921	1	SREBF1	17	17722973	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	6150320	17722973	63472237	382	143972											
SARM1	23098	broad.mit.edu	37	chr17	26715561	26715561	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggattgggtgcataaggtAggtgcctgcctatgcttctg	14	7	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26715561	T	T	26715561	1	4	177	0	1	0	0	0	0	0	0	0	13954	435	15	5		5	SARM1	17	26715561	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	8992588	26715561	54479649	383	143973											
STAC2	342667	broad.mit.edu	37	chr17	37373190	37373190	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagagaggttttgaggaggtCatggcctatggagaacttgg	16	5	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37373190	A	A	37373190	1	1	177	0	1	0	0	0	0	0	0	0	15358	841	29	3		3	STAC2	17	37373190	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	10657629	37373190	43822020	384	143974											
CDC6	990	broad.mit.edu	37	chr17	38450864	38450864	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattgctttattaatggagCaaggagttcctatggaccat	10	6	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38450864	T	T	38450864	1	4	177	0	1	0	0	0	0	0	0	0	3113	725	25	4		4	CDC6	17	38450864	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1077674	38450864	42744346	385	143975											
GPATCH8	23131	broad.mit.edu	37	chr17	42483489	42483489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaatcagaaagcaaagcCtttaggacatgaccctcaac	9	10	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42483489	A	A	42483489	1	1	177	0	1	0	0	0	0	0	0	0	6659	696	24	2		2	GPATCH8	17	42483489	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	4032625	42483489	38711721	386	143976											
ADAM11	4185	broad.mit.edu	37	chr17	42854901	42854901	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatctctggagctcctcgGctaggggacctggtgggaga	15	10	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42854901	T	T	42854901	2	4	177	1	0	0	0	0	0	0	0	1	235	1190	42	3		3	ADAM11	17	42854901	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	371412	42854901	38340309	387	143977											
MAP3K14	9020	broad.mit.edu	37	chr17	43366551	43366551	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagtgctggggacgaggGcgctgggtccagtccccacc	17	13	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43366551	C	C	43366551	1	2	177	0	1	0	0	0	0	0	0	0	9340	1218	42	4		4	MAP3K14	17	43366551	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	511650	43366551	37828659	388	143978											
OSBPL7	114881	broad.mit.edu	37	chr17	45891129	45891129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccacaggctcacgtcagCcccaggcccgctggccgccg	12	19	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45891129	A	A	45891129	3	1	177	1	0	0	0	0	1	0	0	0	11376	739	26	3	1141	3	OSBPL7	17	45891129	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	2524578	45891129	35304081	389	143979											
SP2	6668	broad.mit.edu	37	chr17	46000381	46000381	+	Frame_Shift_Del	DEL	C	-	-													acagtccttgtccaggacagCcccccagcaacagctgcagc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46000381	-	-	46000381	7	5	177	1	0	1	0	1	0	0	0	0	15078	738	26	0	1127	0	SP2	17	46000381	Frame_Shift_Del	DEL	C	TCGA-55-1595-01A-01D-0969-08	109252	46000381	35194829	390	143980											
HOXB13	10481	broad.mit.edu	37	chr17	46805195	46805195	+	Intron	DEL	C	-	-													ctgacctccatccaggccctCcagctactcagacctccttc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46805195	-	-	46805195	6	5	177	0	1	1	0	1	0	0	0	0	7367	870	30	0		0	HOXB13	17	46805195	Intron	DEL	C	TCGA-55-1595-01A-01D-0969-08	804814	46805195	34390015	391	143981											
COL1A1	1277	broad.mit.edu	37	chr17	48275403	48275403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggttagaagacaagtccCtgtcaaccttctccaatctt	7	11	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48275403	T	T	48275403	1	4	177	0	1	0	0	0	0	0	0	0	3709	696	24	4		4	COL1A1	17	48275403	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	1470208	48275403	32919807	392	143982											
ABCA9	10350	broad.mit.edu	37	chr17	67013932	67013932	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagttatcaatggttgacccTacatgaaggcaaagattaaa	8	6	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67013932	C	C	67013932	5	2	177	1	0	0	0	0	0	0	1	0	39	1536	53	5	2184	5	ABCA9	17	67013932	Splice_Site	SNP	T	TCGA-55-1595-01A-01D-0969-08	18738529	67013932	14181278	393	143983											
SLC39A11	201266	broad.mit.edu	37	chr17	70643679	70643679	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatagaagccaaccactgcTgtttcttcgtatggcctttc	7	13	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70643679	C	C	70643679	1	2	177	0	1	0	0	0	0	0	0	0	14728	1595	55	5		5	SLC39A11	17	70643679	3'UTR	SNP	T	TCGA-55-1595-01A-01D-0969-08	3629747	70643679	10551531	394	143984											
GPR142	350383	broad.mit.edu	37	chr17	72368677	72368677	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcactttggcatcacagccaGagggcatggcggcgaagcct	14	12	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72368677	T	T	72368677	4	4	177	1	0	0	0	0	0	1	0	0	6715	943	33	3	1341	3	GPR142	17	72368677	Nonsense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1724998	72368677	8826533	395	143985											
ACOX1	51	broad.mit.edu	37	chr17	73945907	73945907	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgcgctgactgggcaggTcgttcaaataggacaccatg	14	9	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73945907	C	C	73945907	3	2	177	1	0	0	0	0	1	0	0	0	158	1667	58	5	632	5	ACOX1	17	73945907	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	1577230	73945907	7249303	396	143986											
DNAH17	8632	broad.mit.edu	37	chr17	76548888	76548888	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttcactatagtctttatCtgaaaaacagaggtgacagg	9	8	3	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76548888	A	A	76548888	5	1	177	1	0	0	0	0	0	0	1	0	4641	927	32	3	11478	3	DNAH17	17	76548888	Splice_Site	SNP	C	TCGA-55-1595-01A-01D-0969-08	2602981	76548888	4646322	397	143987											
MAFG	4097	broad.mit.edu	37	chr17	79880889	79880889	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accgacatggtcaccagctcCtcatccgtcaggctggtgcc	10	16	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79880889	G	G	79880889	3	3	177	1	0	0	0	0	1	0	0	0	9248	680	24	4	411	4	MAFG	17	79880889	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	3332001	79880889	1314321	398	143988											
FASN	2194	broad.mit.edu	37	chr17	80040377	80040377	+	Intron	DEL	G	-	-													cttggtcttggggcttttgaGggccccatttggggccttcc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80040377	-	-	80040377	6	5	177	0	1	1	0	1	0	0	0	0	5740	1015	35	0		0	FASN	17	80040377	Intron	DEL	G	TCGA-55-1595-01A-01D-0969-08	159488	80040377	1154833	399	143989											
CTAGE1	64693	broad.mit.edu	37	chr18	19997210	19997210	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagctgtttctggctttcctGaagttcagaattttctttcc	7	9	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19997210	T	T	19997210	3	4	177	1	0	0	0	0	1	0	0	0	4026	1299	45	3	1676	3	CTAGE1	18	19997210	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08		19997210	58080038	400	143990											
C18orf34	374864	broad.mit.edu	37	chr18	30846968	30846968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacatgccaaagaaatagCtgaaaaatcttttgcaacat	6	7	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30846968	A	A	30846968	3	1	177	1	0	0	0	0	1	0	0	0	1920	797	28	3	1322	3	C18orf34	18	30846968	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	10849758	30846968	47230280	401	143991											
DCC	1630	broad.mit.edu	37	chr18	50683801	50683801	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttccagccgatttgtccGtctcagctggcgcccacctg	11	15	1	0	rs138053380		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683801	A	A	50683801	3	1	177	1	0	0	0	0	1	0	0	0	4315	1145	40	4	1367	4	DCC	18	50683801	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	19836833	50683801	27393447	402	143992											
WDR7	23335	broad.mit.edu	37	chr18	54348649	54348649	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatttctgtgactctaaGtacaaactattataagtata	4	6	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54348649	T	T	54348649	1	4	177	0	1	0	0	0	0	0	0	0	17447	1044	36	3		3	WDR7	18	54348649	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3664848	54348649	23728599	403	143993											
NETO1	81832	broad.mit.edu	37	chr18	70525974	70525974	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaacattctctgagaaagTataatgttgtcttacacaag	8	6	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70525974	G	G	70525974	1	3	177	0	1	0	0	0	0	0	0	0	10434	1653	57	5		5	NETO1	18	70525974	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	16177325	70525974	7551274	404	143994											
SEMA6B	10501	broad.mit.edu	37	chr19	4550923	4550923	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcaggtcaaaggcgcAgacagccgagccagggatgc	15	11	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4550923	T	T	4550923	3	4	177	1	0	0	0	0	1	0	0	0	14153	188	7	5	1685	5	SEMA6B	19	4550923	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08		4550923	54578060	405	143995											
RANBP3	8498	broad.mit.edu	37	chr19	5977958	5977958	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccgccacggcgctagcctGgagcggacgaaacccttgca	13	16	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5977958	C	C	5977958	1	2	177	0	1	0	0	0	0	0	0	0	13137	1363	47	4		4	RANBP3	19	5977958	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1427035	5977958	53151025	406	143996											
EMR1	2015	broad.mit.edu	37	chr19	6896610	6896610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaatcaagtcaaagctGgctgggtattgaatgtaggt	13	4	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6896610	T	T	6896610	1	4	177	0	1	0	0	0	0	0	0	0	5146	1363	47	2		2	EMR1	19	6896610	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	918652	6896610	52232373	407	143997											
MUC16	94025	broad.mit.edu	37	chr19	9067777	9067777	+	Frame_Shift_Del	DEL	C	-	-													aggtaaactggccacagatgCcagcatatctgtggtcttca							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9067777	-	-	9067777	7	5	177	1	0	1	0	1	0	0	0	0	10067	739	26	0	24182	0	MUC16	19	9067777	Frame_Shift_Del	DEL	C	TCGA-55-1595-01A-01D-0969-08	2171167	9067777	50061206	408	143998											
OR7G3	390883	broad.mit.edu	37	chr19	9236888	9236888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccataaaacaaggaaacaaCgattaaatgtgacccgcaga	7	9	0	2	rs61730396	byFrequency;by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9236888	A	A	9236888	3	1	177	1	0	0	0	0	1	0	0	0	11318	536	19	3	202	3	OR7G3	19	9236888	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	169111	9236888	49892095	409	143999											
CYP4F8	11283	broad.mit.edu	37	chr19	15740149	15740149	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggacggactttggctgcGagtagaacccctgggctgag	17	9	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15740149	T	T	15740149	3	4	177	1	0	0	0	0	1	0	0	0	4224	1058	37	3	1589	3	CYP4F8	19	15740149	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	6503261	15740149	43388834	410	144000											
EPS15L1	58513	broad.mit.edu	37	chr19	16496038	16496038	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatctgcaatcggcaccaAcaaagtcagagttacaggtc	11	10	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16496038	C	C	16496038	1	2	177	0	1	0	0	0	0	0	0	0	5235	58	2	5		5	EPS15L1	19	16496038	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	755889	16496038	42632945	411	144001											
MPV17L2	84769	broad.mit.edu	37	chr19	18306706	18306706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacctcagcccggtccctGccaagtctgttgagcagggc	13	14	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18306706	T	T	18306706	1	4	177	0	1	0	0	0	0	0	0	0	9841	1334	46	3		3	MPV17L2	19	18306706	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1810668	18306706	40822277	412	144002											
COMP	1311	broad.mit.edu	37	chr19	18895217	18895217	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagagacctcgtgggccacCggagcccccctagacacctt	10	17	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18895217	T	T	18895217	1	4	177	0	1	0	0	0	0	0	0	0	3756	667	23	4		4	COMP	19	18895217	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	588511	18895217	40233766	413	144003											
ZNF708	7562	broad.mit.edu	37	chr19	21477667	21477667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagatcctaaatcctttaTagacatataaatgtaacaaa	3	7	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21477667	C	C	21477667	1	2	177	0	1	0	0	0	0	0	0	0	18240	1421	49	5		5	ZNF708	19	21477667	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	2582450	21477667	37651316	414	144004											
ZNF676	163223	broad.mit.edu	37	chr19	22363115	22363115	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctctgcagcatgaattctCttgtgtttagtaaagcttga	8	7	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363115	A	A	22363115	3	1	177	1	0	0	0	0	1	0	0	0	18210	912	32	3	366	3	ZNF676	19	22363115	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	885448	22363115	36765868	415	144005											
ZNF99	7652	broad.mit.edu	37	chr19	22939359	22939359	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagggtttctctccagtatGaattgatttatgtttagtaa	9	4	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22939359	T	T	22939359	3	4	177	1	0	0	0	0	1	0	0	0	18333	1290	45	3	304	3	ZNF99	19	22939359	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	576244	22939359	36189624	416	144006											
SIPA1L3	23094	broad.mit.edu	37	chr19	38579466	38579466	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacggacctcagtaccagtAcaggatcatcttccggaccc	9	15	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38579466	G	G	38579466	3	3	177	1	0	0	0	0	1	0	0	0	14444	391	14	5	1646	5	SIPA1L3	19	38579466	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	15640107	38579466	20549517	417	144007											
RYR1	6261	broad.mit.edu	37	chr19	38996576	38996576	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacgcggaagatatcacAaagtgcccaggtgaaggcgg	13	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38996576	T	T	38996576	3	4	177	1	0	0	0	0	1	0	0	0	13879	130	5	5	8745	5	RYR1	19	38996576	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	417110	38996576	20132407	418	144008											
SPTBN4	57731	broad.mit.edu	37	chr19	41078081	41078081	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgactacaagaaaaagaaGcatgtcttcaagctccagtg	9	8	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41078081	A	A	41078081	2	1	177	1	0	0	0	0	0	0	0	1	15239	962	34	4		4	SPTBN4	19	41078081	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	2081505	41078081	18050902	419	144009											
EGLN2	112398	broad.mit.edu	37	chr19	41313712	41313712	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtcccctctcacccccAgcatcaggacagaaaggtgt	8	16	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41313712	C	C	41313712	5	2	177	1	0	0	0	0	0	0	1	0	5009	202	7	5	1185	5	EGLN2	19	41313712	Splice_Site	SNP	A	TCGA-55-1595-01A-01D-0969-08	235631	41313712	17815271	420	144010											
CYP2F1	1572	broad.mit.edu	37	chr19	41630815	41630815	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcctgatacccaaggtgCgctaggcctggcaaacgaca	11	13	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41630815	T	T	41630815	1	4	177	0	1	0	0	0	0	0	0	0	4204	783	27	4		4	CYP2F1	19	41630815	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	317103	41630815	17498168	421	144011											
ATP1A3	478	broad.mit.edu	37	chr19	42492798	42492798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacaccggccctccatgcCccagctatcctcctggccgg	10	19	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42492798	A	A	42492798	1	1	177	0	1	0	0	0	0	0	0	0	1134	638	22	2		2	ATP1A3	19	42492798	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	861983	42492798	16636185	422	144012											
PSG9	5678	broad.mit.edu	37	chr19	43773657	43773657	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtctgagcacggctgtcAgctgtgctgtccttcctcct	11	14	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43773657	G	G	43773657	1	3	177	0	1	0	0	0	0	0	0	0	12768	203	7	5		5	PSG9	19	43773657	5'UTR	SNP	A	TCGA-55-1595-01A-01D-0969-08	1280859	43773657	15355326	423	144013											
ZNF285	26974	broad.mit.edu	37	chr19	44891556	44891556	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaattcatagggagtcttgCcagagtgagttttacaatga	12	5	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44891556	G	G	44891556	3	3	177	1	0	0	0	0	1	0	0	0	17948	739	26	4	925	4	ZNF285	19	44891556	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	1117899	44891556	14237427	424	144014											
ZNF229	7772	broad.mit.edu	37	chr19	44932748	44932748	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcatctgtatggcttctcGccagtgtgcactctcttatg	10	11	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44932748	A	A	44932748	2	1	177	1	0	0	0	0	0	0	0	1	17908	1074	38	4		4	ZNF229	19	44932748	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	41192	44932748	14196235	425	144015											
CRX	1406	broad.mit.edu	37	chr19	48339455	48339455	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcagggcctcacaccaGcccatgtggatgacctgagg	12	14	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48339455	T	T	48339455	1	4	177	0	1	0	0	0	0	0	0	0	3934	986	34	3		3	CRX	19	48339455	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3406707	48339455	10789528	426	144016											
CRX	1406	broad.mit.edu	37	chr19	48342705	48342705	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggcacgtccccaagaccCtccacagatgtgtgtccaga	11	15	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48342705	A	A	48342705	2	1	177	1	0	0	0	0	0	0	0	1	3934	668	24	2		2	CRX	19	48342705	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	3250	48342705	10786278	427	144017											
SYNGR4	23546	broad.mit.edu	37	chr19	48879049	48879049	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacccctccctaggagggcAccctctgcagggtggggttg	14	15	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48879049	T	T	48879049	1	4	177	0	1	0	0	0	0	0	0	0	15570	174	6	5		5	SYNGR4	19	48879049	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	536344	48879049	10249934	428	144018											
MYBPC2	4606	broad.mit.edu	37	chr19	50961849	50961849	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcctctctctccagccgagGaatgggtccctgccaacacc	10	17	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50961849	C	C	50961849	3	2	177	1	0	0	0	0	1	0	0	0	10106	1175	41	4	2426	4	MYBPC2	19	50961849	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2082800	50961849	8167134	429	144019											
KLK15	55554	broad.mit.edu	37	chr19	51329826	51329826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccccatccggactcccaCacctgtccccatccctcttc	3	23	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51329826	A	A	51329826	1	1	177	0	1	0	0	0	0	0	0	0	8474	493	17	3		3	KLK15	19	51329826	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	367977	51329826	7799157	430	144020											
KLK3	354	broad.mit.edu	37	chr19	51362775	51362775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctccactccattctccaCctacccacagtgggtcattc	4	20	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51362775	A	A	51362775	1	1	177	0	1	0	0	0	0	0	0	0	8476	522	18	3		3	KLK3	19	51362775	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	32949	51362775	7766208	431	144021											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002489	52002489	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatctggaacagaaagacacGgagttcccatcactttgagg	11	9	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52002489	C	C	52002489	1	2	177	0	1	0	0	0	0	0	0	0	14421	1131	39	4		4	SIGLEC12	19	52002489	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	639714	52002489	7126494	432	144022											
NLRP12	91662	broad.mit.edu	37	chr19	54318306	54318306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagcaccgcgtcatattaGctgcgattacgtcgaaatgc	10	10	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54318306	T	T	54318306	1	4	177	0	1	0	0	0	0	0	0	0	10569	986	34	3		3	NLRP12	19	54318306	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	2315817	54318306	4810677	433	144023											
LILRB3	11025	broad.mit.edu	37	chr19	54745979	54745979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggcagcggtatctccctGcatggtgctgtgtcatggat	14	9	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54745979	T	T	54745979	3	4	177	1	0	0	0	0	1	0	0	0	8864	1319	46	3		3	LILRB3	19	54745979	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	427673	54745979	4383004	434	144024											
LILRA5	353514	broad.mit.edu	37	chr19	54818980	54818980	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgagagcatctcctcactCaccagtcccagagtcagact	7	15	4	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54818980	A	A	54818980	1	1	177	0	1	0	0	0	0	0	0	0	8860	841	29	3		3	LILRA5	19	54818980	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	73001	54818980	4310003	435	144025											
LILRB1	10859	broad.mit.edu	37	chr19	55144512	55144512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtgcagccgggccccaCggtggcctcaggagagaacg	16	14	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55144512	A	A	55144512	3	1	177	1	0	0	0	0	1	0	0	0	8862	536	19	3	1026	3	LILRB1	19	55144512	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	325532	55144512	3984471	436	144026											
NLRP9	338321	broad.mit.edu	37	chr19	56223993	56223993	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacaaatacgtacacttaTgaggtcaatcataacagccc	5	12	2	1	rs149940917	by1000genomes	TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56223993	C	C	56223993	1	2	177	0	1	0	0	0	0	0	0	0	10579	1479	51	5		5	NLRP9	19	56223993	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	1079481	56223993	2904990	437	144027											
NLRP4	147945	broad.mit.edu	37	chr19	56370337	56370337	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcttccaactgtcccaagaGataaagcagcaaattcacca	7	12	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56370337	T	T	56370337	3	4	177	1	0	0	0	0	1	0	0	0	10574	933	33	3	1584	3	NLRP4	19	56370337	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	146344	56370337	2758646	438	144028											
NLRP5	126206	broad.mit.edu	37	chr19	56544123	56544123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgccaagctgaggcatcCcacctgcaagatacagaccc	10	14	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56544123	A	A	56544123	3	1	177	1	0	0	0	0	1	0	0	0	10575	623	22	2	2453	2	NLRP5	19	56544123	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	173786	56544123	2584860	439	144029											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56854163	56854163	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acggagatacagagtactgaActgggaccaatcataagaca	10	8	1	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56854163	G	G	56854163	1	3	177	0	1	0	0	0	0	0	0	0	18367	58	2	5		5	ZSCAN5A	19	56854163	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	310040	56854163	2274820	440	144030											
C20orf96	140680	broad.mit.edu	37	chr20	256468	256468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctggtcagtggcagatcCaaggtggaaacccaggaccg	13	13	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	256468	A	A	256468	1	1	177	0	1	0	0	0	0	0	0	0	2144	609	21	2		2	C20orf96	20	256468	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08		256468	62769052	441	144031											
CHGB	1114	broad.mit.edu	37	chr20	5905682	5905682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatagctgagaaattcaGccaaaggggctgactgtcat	12	7	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5905682	T	T	5905682	3	4	177	1	0	0	0	0	1	0	0	0	3370	971	34	3	2039	3	CHGB	20	5905682	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	5649214	5905682	57119838	442	144032											
PAK7	57144	broad.mit.edu	37	chr20	9520343	9520343	+	Intron	SNP	C	A	A													aaaatgttttccccattcatCctatcaacaacttcaaattc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9520343	A	A	9520343	1	1	177	0	1	0	0	0	0	0	0	0	11499	870	30	3		3	PAK7	20	9520343	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	3614661	9520343	53505177	443	144033	615	2									
PAK7	57144	broad.mit.edu	37	chr20	9520345	9520345	+	Intron	SNP	T	A	A													aatgttttccccattcatccTatcaacaacttcaaattcca							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9520345	A	A	9520345	1	1	177	0	1	0	0	0	0	0	0	0	11499	1537	53	5		5	PAK7	20	9520345	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	2	9520345	53505175	444	144034	615	2									
SEC23B	10483	broad.mit.edu	37	chr20	18535781	18535781	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttgtccaaagtgaacccAtctcagacacacaataacct	4	13	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18535781	C	C	18535781	2	2	177	1	0	0	0	0	0	0	0	1	14105	204	8	5		5	SEC23B	20	18535781	Silent	SNP	A	TCGA-55-1595-01A-01D-0969-08	9015436	18535781	44489739	445	144035											
PLAGL2	5326	broad.mit.edu	37	chr20	30785235	30785235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttcaggtgctctagcaGggcctgggtactctcaaagg	14	11	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30785235	T	T	30785235	3	4	177	1	0	0	0	0	1	0	0	0	12115	991	35	2	983	2	PLAGL2	20	30785235	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	12249454	30785235	32240285	446	144036											
C20orf186	149954	broad.mit.edu	37	chr20	31695645	31695645	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtaagaggagatcgagctCcattctgcttttcctccctg	10	11	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31695645	T	T	31695645	1	4	177	0	1	0	0	0	0	0	0	0	2120	870	30	4		4	C20orf186	20	31695645	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	910410	31695645	31329875	447	144037											
ERGIC3	51614	broad.mit.edu	37	chr20	34136178	34136178	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agagccttcattagcaggcaGagctgctcgggctctatttc	11	11	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34136178	T	T	34136178	1	4	177	0	1	0	0	0	0	0	0	0	5267	957	33	3		3	ERGIC3	20	34136178	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	2440533	34136178	28889342	448	144038											
SPAG4	6676	broad.mit.edu	37	chr20	34207127	34207127	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgttccaggagcctccatCgacctgcagaagacatccca	8	15	0	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34207127	A	A	34207127	2	1	177	1	0	0	0	0	0	0	0	1	15096	874	31	3		3	SPAG4	20	34207127	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	70949	34207127	28818393	449	144039											
LBP	3929	broad.mit.edu	37	chr20	36989359	36989359	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcccatgtttttcagaTttgcgaaatgatccagaaat	6	9	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36989359	A	A	36989359	3	1	177	1	0	0	0	0	1	0	0	0	8723	1507	52	5	612	5	LBP	20	36989359	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	2782232	36989359	26036161	450	144040											
NFATC2	4773	broad.mit.edu	37	chr20	50051770	50051770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacttcgttttctcttccCattgatgacgtagaagttca	7	10	2	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50051770	A	A	50051770	3	1	177	1	0	0	0	0	1	0	0	0	10457	594	21	2	850	2	NFATC2	20	50051770	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	13062411	50051770	12973750	451	144041											
NCAM2	4685	broad.mit.edu	37	chr21	22804584	22804584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatctggaaaattgtacGctcccatggagttcaaagtg	10	7	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22804584	T	T	22804584	3	4	177	1	0	0	0	0	1	0	0	0	10298	1087	38	3	1683	3	NCAM2	21	22804584	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08		22804584	25325311	452	144042											
RNF160	26046	broad.mit.edu	37	chr21	30331739	30331739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcactatgaaggtcagagCcggagattcccaacaaaaca	8	11	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30331739	A	A	30331739	1	1	177	0	1	0	0	0	0	0	0	0	13566	754	26	3		3	RNF160	21	30331739	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	7527155	30331739	17798156	453	144043											
GRIK1	2897	broad.mit.edu	37	chr21	31062202	31062202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccagcgggtctgtatGtgtggaacttcgagagcatt	13	7	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31062202	T	T	31062202	3	4	177	1	0	0	0	0	1	0	0	0	6839	1368	48	3	2586	3	GRIK1	21	31062202	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	730463	31062202	17067693	454	144044											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31913933	31913933	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcgccttgctgaagcataCgggcaagatcttggagttag	13	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31913933	A	A	31913933	1	1	177	0	1	0	0	0	0	0	0	0	8604	551	19	3		3	KRTAP19-6	21	31913933	3'UTR	SNP	C	TCGA-55-1595-01A-01D-0969-08	851731	31913933	16215962	455	144045											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31913955	31913955	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagatcttggagttagaGtatgagaatcagcaagtttt	12	4	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31913955	T	T	31913955	1	4	177	0	1	0	0	0	0	0	0	0	8604	1044	36	3		3	KRTAP19-6	21	31913955	3'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	22	31913955	16215940	456	144046											
TIAM1	7074	broad.mit.edu	37	chr21	32638890	32638890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcgtcatccccgtaaagCctgctctcctcagtgtctgg	10	14	4	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32638890	A	A	32638890	3	1	177	1	0	0	0	0	1	0	0	0	16013	738	26	3	4476	3	TIAM1	21	32638890	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	724935	32638890	15491005	457	144047											
CLDN14	23562	broad.mit.edu	37	chr21	37833634	37833634	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggatgaagagggtgccgccGaggatggcaaaggtggtctt	18	6	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37833634	T	T	37833634	2	4	177	1	0	0	0	0	0	0	0	1	3506	1045	37	3		3	CLDN14	21	37833634	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	5194744	37833634	10296261	458	144048											
UMODL1	89766	broad.mit.edu	37	chr21	43504227	43504227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcagttcacgtcaagacCtggggcctgccccgcagagg	15	14	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43504227	A	A	43504227	3	1	177	1	0	0	0	0	1	0	0	0	17106	681	24	2	363	2	UMODL1	21	43504227	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	5670593	43504227	4625668	459	144049											
U2AF1	7307	broad.mit.edu	37	chr21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggtttattgtgcaaccgaGagcacctgtctccatgacga	10	11	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44524456	A	A	44524456	3	1	177	1	0	0	0	0	1	0	0	0	16947	942	33	4	720	4	U2AF1	21	44524456	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	1020229	44524456	3605439	460	144050											
POTEH	23784	broad.mit.edu	37	chr22	16287590	16287590	+	Frame_Shift_Del	DEL	C	-	-													agcagtggcagcaccacttgCccatcttgctcctgagtgtc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16287590	-	-	16287590	7	5	177	1	0	1	0	1	0	0	0	0	12363	739	26	0	1381	0	POTEH	22	16287590	Frame_Shift_Del	DEL	C	TCGA-55-1595-01A-01D-0969-08		16287590	35016976	461	144051											
GAB4	128954	broad.mit.edu	37	chr22	17443596	17443596	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgaggcactgtcctgGccccactctggttttggtgg	13	12	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17443596	T	T	17443596	1	4	177	0	1	0	0	0	0	0	0	0	6211	1218	42	3		3	GAB4	22	17443596	3'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	1156006	17443596	33860970	462	144052											
GGT5	2687	broad.mit.edu	37	chr22	24629836	24629836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggcagttcacatgtggGcccacctgttgtcacattgt	10	12	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24629836	T	T	24629836	1	4	177	0	1	0	0	0	0	0	0	0	6426	1218	42	3		3	GGT5	22	24629836	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	7186240	24629836	26674730	463	144053											
CRYBB1	1414	broad.mit.edu	37	chr22	27012292	27012292	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgagacatggttcccgCctgcaaaagtctgtaaagaa	10	10	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27012292	A	A	27012292	1	1	177	0	1	0	0	0	0	0	0	0	3942	754	26	3		3	CRYBB1	22	27012292	5'UTR	SNP	C	TCGA-55-1595-01A-01D-0969-08	2382456	27012292	24292274	464	144054											
CRYBA4	1413	broad.mit.edu	37	chr22	27021629	27021629	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccggggaggcccaagccccTcatgtgggcacttcggaatc	13	15	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27021629	A	A	27021629	1	1	177	0	1	0	0	0	0	0	0	0	3941	1566	54	5		5	CRYBA4	22	27021629	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	9337	27021629	24282937	465	144055											
NIPSNAP1	8508	broad.mit.edu	37	chr22	29954822	29954822	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggattccatcctcagacaGggttctcagcagaagacctc	10	12	2	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29954822	C	C	29954822	1	2	177	0	1	0	0	0	0	0	0	0	10524	1015	35	4		4	NIPSNAP1	22	29954822	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	2933193	29954822	21349744	466	144056											
SYN3	8224	broad.mit.edu	37	chr22	33265006	33265006	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtagagagagttgacagcagGcagccctccatactgcaggc	13	11	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33265006	C	C	33265006	3	2	177	1	0	0	0	0	1	0	0	0	15561	1203	42	4	1214	4	SYN3	22	33265006	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	3310184	33265006	18039560	467	144057											
TTLL12	23170	broad.mit.edu	37	chr22	43570418	43570418	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctgagtttcctgcagggCggaggcaggtgcgccagctc	17	11	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43570418	T	T	43570418	1	4	177	0	1	0	0	0	0	0	0	0	16851	783	27	4		4	TTLL12	22	43570418	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	10305412	43570418	7734148	468	144058											
UPK3A	7380	broad.mit.edu	37	chr22	45682978	45682978	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagaaaggatgatcaggCatttgatgaataactgagtg	14	4	1	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45682978	A	A	45682978	1	1	177	0	1	0	0	0	0	0	0	0	17136	725	25	3		3	UPK3A	22	45682978	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2112560	45682978	5621588	469	144059											
SMC1B	27127	broad.mit.edu	37	chr22	45758933	45758933	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taataaagtcaagcattacaAgtgtaaacagaaaactttga	6	5	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45758933	G	G	45758933	1	3	177	0	1	0	0	0	0	0	0	0	14896	87	3	5		5	SMC1B	22	45758933	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	75955	45758933	5545633	470	144060											
SHANK3	85358	broad.mit.edu	37	chr22	51117202	51117203	+	Missense_Mutation	DNP	CC	TT	TT													tgtctgtgaacccagagtgcCccctgagcctcgcagcccag							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51117203	TT	TT	51117202	3	4	177	1	0	0	0	0	1	0	0	0	14379	623	22	4	472	4	SHANK3	22	51117202	Missense_Mutation	DNP	CC	TCGA-55-1595-01A-01D-0969-08	5358269	51117202	187364	471	144061											
CRLF2	64109	broad.mit.edu	37	chrX	1331406	1331406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctggttgcaaagcaaacCacaaaccaaaatacaacaag	6	11	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1331406	A	A	1331406	1	1	177	0	1	0	0	0	0	0	0	0	3919	609	21	2		2	CRLF2	23	1331406	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08		1331406	153939154	472	144062											
P2RY8	286530	broad.mit.edu	37	chrX	1584615	1584615	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgaggcagctgagacaCagcgtgagcttgtacacgtg	14	8	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1584615	A	A	1584615	2	1	177	1	0	0	0	0	0	0	0	1	11449	465	17	3		3	P2RY8	23	1584615	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	253209	1584615	153685945	473	144063											
NLGN4X	57502	broad.mit.edu	37	chrX	5947525	5947525	+	Intron	SNP	C	A	A													taaagaatcacactgactcaCcaatgctaaattaagaaaaa							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5947525	A	A	5947525	1	1	177	0	1	0	0	0	0	0	0	0	10559	522	18	3		3	NLGN4X	23	5947525	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	4362910	5947525	149323035	474	144064	616	2									
NLGN4X	57502	broad.mit.edu	37	chrX	5947527	5947527	+	Intron	SNP	A	C	C													aagaatcacactgactcaccAatgctaaattaagaaaaaag							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5947527	C	C	5947527	1	2	177	0	1	0	0	0	0	0	0	0	10559	145	5	5		5	NLGN4X	23	5947527	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	2	5947527	149323033	475	144065	616	2									
OFD1	8481	broad.mit.edu	37	chrX	13786084	13786084	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catacaggctgtacttgaagGatcgggattaatattagtgc	11	6	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13786084	C	C	13786084	1	2	177	0	1	0	0	0	0	0	0	0	10933	1189	41	4		4	OFD1	23	13786084	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	7838557	13786084	141484476	476	144066											
GLRA2	2742	broad.mit.edu	37	chrX	14748344	14748344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcaggaagaagacgttactCgtgaaagtcgttttaatttt	10	5	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14748344	A	A	14748344	3	1	177	1	0	0	0	0	1	0	0	0	6519	884	31	3	1202	3	GLRA2	23	14748344	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	962260	14748344	140522216	477	144067											
REPS2	9185	broad.mit.edu	37	chrX	17152022	17152022	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcagaaagtagtccaGcaaagaaggtaaggtcagcc	13	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17152022	C	C	17152022	3	2	177	1	0	0	0	0	1	0	0	0	13337	971	34	4	1712	4	REPS2	23	17152022	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	2403678	17152022	138118538	478	144068											
NHS	4810	broad.mit.edu	37	chrX	17742402	17742402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctaaagctaatgagacCtatttgtgggttgcaggagt	11	5	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17742402	A	A	17742402	1	1	177	0	1	0	0	0	0	0	0	0	10506	696	24	2		2	NHS	23	17742402	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	590380	17742402	137528158	479	144069											
PPEF1	5475	broad.mit.edu	37	chrX	18800571	18800571	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcactttgctgtttctatAgagaaatttaaaaagagcca	6	6	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18800571	G	G	18800571	1	3	177	0	1	0	0	0	0	0	0	0	12403	435	15	5		5	PPEF1	23	18800571	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	1058169	18800571	136469989	480	144070											
DMD	1756	broad.mit.edu	37	chrX	32509489	32509489	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcagtagttgtcatctgctCcaattgttgtagctgattat	9	7	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32509489	A	A	32509489	4	1	177	1	0	0	0	0	0	1	0	0	4620	864	30	3	9013	3	DMD	23	32509489	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	13708918	32509489	122761071	481	144071											
DMD	1756	broad.mit.edu	37	chrX	32663083	32663083	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attaacgttttagtttacctCatgagtatgaaactggtctt	7	6	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32663083	A	A	32663083	4	1	177	1	0	0	0	0	0	1	0	0	4620	835	29	3	10433	3	DMD	23	32663083	Nonsense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	153594	32663083	122607477	482	144072											
CXorf22	170063	broad.mit.edu	37	chrX	35994205	35994205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatatgatttggaaatatGgaacccttgttagggttctc	9	5	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35994205	T	T	35994205	1	4	177	0	1	0	0	0	0	0	0	0	4135	1363	47	2		2	CXorf22	23	35994205	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	3331122	35994205	119276355	483	144073											
CXorf59	286464	broad.mit.edu	37	chrX	36103605	36103605	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtagataaccatgaaaaAagggtaattcaactccattt	6	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36103605	T	T	36103605	3	4	177	1	0	0	0	0	1	0	0	0	4148	11	1	5	605	5	CXorf59	23	36103605	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	109400	36103605	119166955	484	144074											
MAOB	4129	broad.mit.edu	37	chrX	43652683	43652683	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccctttttcctccagaaaGgctctttataataaactata	3	11	1	1	rs55815323		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43652683	C	C	43652683	3	2	177	1	0	0	0	0	1	0	0	0	9318	1000	35	4	683	4	MAOB	23	43652683	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	7549078	43652683	111617877	485	144075											
ZNF673	55634	broad.mit.edu	37	chrX	46332839	46332839	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacataagaaaattcatAtggagagagaccctataaat	6	5	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46332839	G	G	46332839	1	3	177	0	1	0	0	0	0	0	0	0	18207	464	16	5		5	ZNF673	23	46332839	3'UTR	SNP	A	TCGA-55-1595-01A-01D-0969-08	2680156	46332839	108937721	486	144076											
FTSJ1	24140	broad.mit.edu	37	chrX	48341100	48341100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggccaaggagatccgccCccaggactgccccatcagca	11	17	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48341100	A	A	48341100	3	1	177	1	0	0	0	0	1	0	0	0	6147	623	22	2	913	2	FTSJ1	23	48341100	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	2008261	48341100	106929460	487	144077											
HDAC6	10013	broad.mit.edu	37	chrX	48682234	48682234	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggactgtggcttccttctCttgccaatttgtgtctccag	10	11	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48682234	T	T	48682234	1	4	177	0	1	0	0	0	0	0	0	0	7078	928	32	4		4	HDAC6	23	48682234	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	341134	48682234	106588326	488	144078											
CCDC22	28952	broad.mit.edu	37	chrX	49093385	49093385	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacttgaggatttccctagtTcctggttttccaaatggaag	10	8	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49093385	G	G	49093385	1	3	177	0	1	0	0	0	0	0	0	0	2824	1798	62	5		5	CCDC22	23	49093385	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	411151	49093385	106177175	489	144079											
ITIH5L	347365	broad.mit.edu	37	chrX	54776267	54776267	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctctgtccctggctcaccCcatgccctggtttctggatc	9	16	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54776267	T	T	54776267	1	4	177	0	1	0	0	0	0	0	0	0	7978	638	22	4		4	ITIH5L	23	54776267	3'UTR	SNP	C	TCGA-55-1595-01A-01D-0969-08	5682882	54776267	100494293	490	144080											
USP51	158880	broad.mit.edu	37	chrX	55515250	55515250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgccttcgtagcccccgcCgccgcctcctccattttccc	7	22	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55515250	A	A	55515250	2	1	177	1	0	0	0	0	0	0	0	1	17210	639	23	1		1	USP51	23	55515250	Silent	SNP	C	TCGA-55-1595-01A-01D-0969-08	738983	55515250	99755310	491	144081											
VSIG4	11326	broad.mit.edu	37	chrX	65242213	65242213	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgatgatctggtactcctgTcctatgcagggctcatcaga	11	11	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65242213	C	C	65242213	2	2	177	1	0	0	0	0	0	0	0	1	17352	1654	58	5		5	VSIG4	23	65242213	Silent	SNP	T	TCGA-55-1595-01A-01D-0969-08	9726963	65242213	90028347	492	144082											
VSIG4	11326	broad.mit.edu	37	chrX	65252654	65252654	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatatgggaccaaaaggctGaatcattcttgttgggcgta	13	6	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65252654	C	C	65252654	1	2	177	0	1	0	0	0	0	0	0	0	17352	1305	45	4		4	VSIG4	23	65252654	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	10441	65252654	90017906	493	144083											
NXF5	55998	broad.mit.edu	37	chrX	101092439	101092439	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagcgctcaggtgctcaGgatcctccttaacctcctac	9	14	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101092439	A	A	101092439	1	1	177	0	1	0	0	0	0	0	0	0	10881	1015	35	4		4	NXF5	23	101092439	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	35839785	101092439	54178121	494	144084											
ESX1	80712	broad.mit.edu	37	chrX	103497226	103497226	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatacagatatagaaggaaGatgaaaacacatcttttttt	7	4	1	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103497226	T	T	103497226	1	4	177	0	1	0	0	0	0	0	0	0	5305	957	33	3		3	ESX1	23	103497226	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	2404787	103497226	51773334	495	144085											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685889	125685889	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacggggagacccacctcgcTatgccaggcaacagtgtcat	11	13	1	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125685889	A	A	125685889	3	1	177	1	0	0	0	0	1	0	0	0	4297	1522	53	5	692	5	DCAF12L1	23	125685889	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	22188663	125685889	29584671	496	144086											
OCRL	4952	broad.mit.edu	37	chrX	128691359	128691359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcgccgctttgaaatccCtgatgaggaacactgtttga	11	9	0	5			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128691359	A	A	128691359	3	1	177	1	0	0	0	0	1	0	0	0	10918	681	24	2	314	2	OCRL	23	128691359	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	3005470	128691359	26579201	497	144087											
ELF4	2000	broad.mit.edu	37	chrX	129203063	129203063	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaagtagctgggtgtgGtggtgggtacctgtaatccc	14	7	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129203063	A	A	129203063	1	1	177	0	1	0	0	0	0	0	0	0	5098	1276	44	4		4	ELF4	23	129203063	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	511704	129203063	26067497	498	144088											
ZNF280C	55609	broad.mit.edu	37	chrX	129350204	129350204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaaacatttccaatgggGcaaaaaatagtcttgatgaa	7	8	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129350204	T	T	129350204	1	4	177	0	1	0	0	0	0	0	0	0	17942	1218	42	3		3	ZNF280C	23	129350204	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	147141	129350204	25920356	499	144089											
GPR112	139378	broad.mit.edu	37	chrX	135426564	135426564	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttagttgttcctgaaaaTatgacaattcaagaaaaaag	6	4	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135426564	C	C	135426564	2	2	177	1	0	0	0	0	0	0	0	1	6694	1403	49	5		5	GPR112	23	135426564	Silent	SNP	T	TCGA-55-1595-01A-01D-0969-08	6076360	135426564	19843996	500	144090											
GPR112	139378	broad.mit.edu	37	chrX	135428319	135428319	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaatggtgcaattgtAtttggaggtacaacgacccc	10	7	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135428319	C	C	135428319	2	2	177	1	0	0	0	0	0	0	0	1	6694	436	16	5		5	GPR112	23	135428319	Silent	SNP	A	TCGA-55-1595-01A-01D-0969-08	1755	135428319	19842241	501	144091											
HTATSF1	27336	broad.mit.edu	37	chrX	135583115	135583115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgaaatttcagttagtaCctgtgtgtatcacattggta	8	6	2	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135583115	A	A	135583115	1	1	177	0	1	0	0	0	0	0	0	0	7503	522	18	3		3	HTATSF1	23	135583115	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	154796	135583115	19687445	502	144092											
VGLL1	51442	broad.mit.edu	37	chrX	135631210	135631210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaggggtgcctctgattGgttgtggttgagagtgagtt	18	3	1	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135631210	T	T	135631210	1	4	177	0	1	0	0	0	0	0	0	0	17285	1363	47	2		2	VGLL1	23	135631210	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	48095	135631210	19639350	503	144093											
ATP11C	286410	broad.mit.edu	37	chrX	138856885	138856885	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttttaggaaactcatgcAgcaatttcttgcgatattct	6	8	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138856885	T	T	138856885	3	4	177	1	0	0	0	0	1	0	0	0	1125	188	7	5	1320	5	ATP11C	23	138856885	Missense_Mutation	SNP	A	TCGA-55-1595-01A-01D-0969-08	3225675	138856885	16413675	504	144094											
ATP11C	286410	broad.mit.edu	37	chrX	138884317	138884317	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaggctggtaagtggtggGtgtttcttttgcaatactat	13	4	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138884317	A	A	138884317	1	1	177	0	1	0	0	0	0	0	0	0	1125	1276	44	4		4	ATP11C	23	138884317	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	27432	138884317	16386243	505	144095											
MAGEC3	139081	broad.mit.edu	37	chrX	140953473	140953473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctccctgtgctgttagCcctgggtggcccaaggcagg	14	14	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140953473	A	A	140953473	1	1	177	0	1	0	0	0	0	0	0	0	9274	754	26	3		3	MAGEC3	23	140953473	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	2069156	140953473	14317087	506	144096											
FMR1	2332	broad.mit.edu	37	chrX	147022066	147022066	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatctatcattacttttaTaggatcattgttgcaatttc	4	6	3	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147022066	C	C	147022066	1	2	177	0	1	0	0	0	0	0	0	0	6018	1421	49	5		5	FMR1	23	147022066	Intron	SNP	T	TCGA-55-1595-01A-01D-0969-08	6068593	147022066	8248494	507	144097											
AFF2	2334	broad.mit.edu	37	chrX	148049134	148049134	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatgaagcattggtttctGaaagagcttgttttgtttat	10	3	1	4			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148049134	A	A	148049134	1	1	177	0	1	0	0	0	0	0	0	0	357	1305	45	4		4	AFF2	23	148049134	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	1027068	148049134	7221426	508	144098											
IDS	3423	broad.mit.edu	37	chrX	148585626	148585626	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgacaatagctgaagctcccCgcccccaaccctcagtgcac	7	18	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148585626	G	G	148585626	1	3	177	0	1	0	0	0	0	0	0	0	7573	667	23	4		4	IDS	23	148585626	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	536492	148585626	6684934	509	144099											
CXorf40B	541578	broad.mit.edu	37	chrX	149100952	149100952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgggagttaagtcttcgGggcattgcaaagtttcccca	11	10	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149100952	T	T	149100952	3	4	177	1	0	0	0	0	1	0	0	0	4142	1232	43	2	193	2	CXorf40B	23	149100952	Missense_Mutation	SNP	G	TCGA-55-1595-01A-01D-0969-08	515326	149100952	6169608	510	144100											
MTM1	4534	broad.mit.edu	37	chrX	149832038	149832038	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatgcgtcacttggaactcTgggtgaattactacattaga	10	7	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149832038	C	C	149832038	3	2	177	1	0	0	0	0	1	0	0	0	10031	1580	55	5	1650	5	MTM1	23	149832038	Missense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	731086	149832038	5438522	511	144101											
GABRA3	2556	broad.mit.edu	37	chrX	151336626	151336626	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcctgaaatacgcgaaggGgagccccggggtttgggtgc	16	9	0	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151336626	A	A	151336626	1	1	177	0	1	0	0	0	0	0	0	0	6222	1247	43	4		4	GABRA3	23	151336626	3'UTR	SNP	G	TCGA-55-1595-01A-01D-0969-08	1504588	151336626	3933934	512	144102											
MAGEA3	4102	broad.mit.edu	37	chrX	151935230	151935230	+	Frame_Shift_Del	DEL	C	-	-													tcgtgctcagactcactcttCcccctctctcaaaacccact							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151935230	-	-	151935230	7	5	177	1	0	1	0	1	0	0	0	0	9257	864	30	0	11	0	MAGEA3	23	151935230	Frame_Shift_Del	DEL	C	TCGA-55-1595-01A-01D-0969-08	598604	151935230	3335330	513	144103											
FAM58A	92002	broad.mit.edu	37	chrX	152857875	152857875	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccgtatctttcttcatGgataattaatagaatttggt	7	7	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152857875	T	T	152857875	1	4	177	0	1	0	0	0	0	0	0	0	5641	1363	47	2		2	FAM58A	23	152857875	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	922645	152857875	2412685	514	144104											
IDH3G	3421	broad.mit.edu	37	chrX	153052271	153052271	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcactgtttcaaacaccgcGtacacatggccatagttggc	8	13	2	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153052271	A	A	153052271	2	1	177	1	0	0	0	0	0	0	0	1	7568	1140	40	4		4	IDH3G	23	153052271	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	194396	153052271	2218289	515	144105											
HCFC1	3054	broad.mit.edu	37	chrX	153228906	153228906	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacgaggaaagatcagttaCggcaagtctcgactcctcac	10	11	3	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153228906	T	T	153228906	1	4	177	0	1	0	0	0	0	0	0	0	7057	551	19	4		4	HCFC1	23	153228906	Intron	SNP	C	TCGA-55-1595-01A-01D-0969-08	176635	153228906	2041654	516	144106											
RPL10	6134	broad.mit.edu	37	chrX	153629197	153629198	+	3'UTR	DNP	GG	TT	TT													gcgggccctgcactcatgagGgcttccaatgtgctgccccc							TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	153629198	TT	TT	153629197	1	4	177	0	1	0	0	0	0	0	0	0	13665	1247	43	2		2	RPL10	23	153629197	3'UTR	DNP	GG	TCGA-55-1595-01A-01D-0969-08	400291	153629197	1641363	517	144107											
PLXNA3	55558	broad.mit.edu	37	chrX	153693898	153693898	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggagcttccctcctaagGcaattggcactgctggggtc	13	12	0	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153693898	A	A	153693898	1	1	177	0	1	0	0	0	0	0	0	0	12216	1218	42	4		4	PLXNA3	23	153693898	Intron	SNP	G	TCGA-55-1595-01A-01D-0969-08	64701	153693898	1576662	518	144108											
SLC10A3	8273	broad.mit.edu	37	chrX	153716544	153716544	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgggcagcatgaagacctTggccatgaggaaagcgtaca	13	9	0	3			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153716544	A	A	153716544	4	1	177	1	0	0	0	0	0	1	0	0	14488	1821	63	5	701	5	SLC10A3	23	153716544	Nonsense_Mutation	SNP	T	TCGA-55-1595-01A-01D-0969-08	22646	153716544	1554016	519	144109											
FAM3A	60343	broad.mit.edu	37	chrX	153736186	153736186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcgatgagctcgccgCtgacccctgtgtcaggaggg	16	13	1	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153736186	A	A	153736186	3	1	177	1	0	0	0	0	1	0	0	0	5607	797	28	3	367	3	FAM3A	23	153736186	Missense_Mutation	SNP	C	TCGA-55-1595-01A-01D-0969-08	19642	153736186	1534374	520	144110											
F8	2157	broad.mit.edu	37	chrX	154182323	154182323	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtctgacattatctgttAattacatatattgaaagggg	8	5	2	2			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154182323	T	T	154182323	1	4	177	0	1	0	0	0	0	0	0	0	5393	377	13	5		5	F8	23	154182323	Intron	SNP	A	TCGA-55-1595-01A-01D-0969-08	446137	154182323	1088237	521	144111											
TMLHE	55217	broad.mit.edu	37	chrX	154736681	154736681	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcaatggcactttactgagGagttcaaattcctcaggtgc	9	9	3	1			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154736681	T	T	154736681	2	4	177	1	0	0	0	0	0	0	0	1	16355	1161	41	3		3	TMLHE	23	154736681	Silent	SNP	G	TCGA-55-1595-01A-01D-0969-08	554358	154736681	533879	522	144112											
SPRY3	10251	broad.mit.edu	37	chrX	155003884	155003884	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatcatccgaacccaaccTggagcaggggtccacccaaa	8	16	1	0			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155003884	A	A	155003884	2	1	177	1	0	0	0	0	0	0	0	1	15225	1567	55	5		5	SPRY3	23	155003884	Silent	SNP	T	TCGA-55-1595-01A-01D-0969-08	267203	155003884	266676	523	144113											
MMEL1	79258	broad.mit.edu	37	chr1	2526502	2526502	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctggctgtgggcatttacAtgactctgagcaagtccctc	10	13	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	2526502	G	G	2526502	1	3	178	0	1	0	0	0	0	0	0	0	9739	232	8	5		5	MMEL1	1	2526502	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01		2526502	246724119	1	144114											
KIF1B	23095	broad.mit.edu	37	chr1	10364654	10364655	+	Intron	INS	-	AGAC	AGAC													tgacacctccgcggatgaggINSagacagttctcagcacccaa							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AGAC	10364655	AGAC	AGAC	10364654	6	5	178	0	1	1	1	0	0	0	0	0	8354	1165	41	0		0	KIF1B	1	10364654	Intron	INS	-	TCGA-55-1596-01A-01D-1040-01	7838152	10364654	238885967	2	144115											
VPS13D	55187	broad.mit.edu	37	chr1	12406759	12406759	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattgcgtatatacactgCacctgaatcatgtggatata	7	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	12406759	T	T	12406759	1	4	178	0	1	0	0	0	0	0	0	0	17319	725	25	4		4	VPS13D	1	12406759	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	2042105	12406759	236843862	3	144116											
TMEM82	388595	broad.mit.edu	37	chr1	16069342	16069342	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctcaggcctgatcggggCccttggagtcttggtcctga	13	14	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	16069342	T	T	16069342	3	4	178	1	0	0	0	0	1	0	0	0	16329	739	26	4	107	4	TMEM82	1	16069342	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	3662583	16069342	233181279	4	144117											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17949602	17949602	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgccactccatgttccagAtcgccctgtcctcccgcgtg	8	18	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	17949602	T	T	17949602	3	4	178	1	0	0	0	0	1	0	0	0	897	333	12	5	1174	5	ARHGEF10L	1	17949602	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	1880260	17949602	231301019	5	144118											
KIAA0090	23065	broad.mit.edu	37	chr1	19563560	19563560	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccagaaacctgcagcctCccaaaaaacagtctgattgg	7	13	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	19563560	T	T	19563560	1	4	178	0	1	0	0	0	0	0	0	0	8223	870	30	4		4	KIAA0090	1	19563560	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	1613958	19563560	229687061	6	144119											
ALPL	249	broad.mit.edu	37	chr1	21900147	21900147	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatccacatcctcctggcGtcctcctcaggtctcttcga	7	17	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	21900147	A	A	21900147	1	1	178	0	1	0	0	0	0	0	0	0	547	1160	40	4		4	ALPL	1	21900147	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	2336587	21900147	227350474	7	144120											
UBXN11	91544	broad.mit.edu	37	chr1	26620937	26620937	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaatggggcccccagagctGaccagacaaagggatgagta	14	10	0	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26620937	T	T	26620937	1	4	178	0	1	0	0	0	0	0	0	0	17039	1305	45	3		3	UBXN11	1	26620937	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	4720790	26620937	222629684	8	144121											
KHDRBS1	10657	broad.mit.edu	37	chr1	32504239	32504239	+	Intron	DEL	G	-	-													gggtgagtcaggcagtataaGcactgttttttgtcctgagg							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	32504239	-	-	32504239	6	5	178	0	1	1	0	1	0	0	0	0	8216	986	34	0		0	KHDRBS1	1	32504239	Intron	DEL	G	TCGA-55-1596-01A-01D-1040-01	5883302	32504239	216746382	9	144122											
KPNA6	23633	broad.mit.edu	37	chr1	32573644	32573644	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccctttcgggctgccgtcCtacagatccgccatattgtc	9	15	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	32573644	T	T	32573644	1	4	178	0	1	0	0	0	0	0	0	0	8505	695	24	4		4	KPNA6	1	32573644	5'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	69405	32573644	216676977	10	144123											
CSMD2	114784	broad.mit.edu	37	chr1	34208795	34208795	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgccccatccacacctcCtcctccctccatgggagcac	5	21	0	0	rs115734138	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	34208795	T	T	34208795	1	4	178	0	1	0	0	0	0	0	0	0	3979	696	24	4		4	CSMD2	1	34208795	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	1635151	34208795	215041826	11	144124											
CSMD2	114784	broad.mit.edu	37	chr1	34285452	34285452	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctaacctgggagacaaagTgtgtctgtgagctccatccc	10	12	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	34285452	G	G	34285452	1	3	178	0	1	0	0	0	0	0	0	0	3979	1711	59	5		5	CSMD2	1	34285452	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	76657	34285452	214965169	12	144125											
PTPRF	5792	broad.mit.edu	37	chr1	44057085	44057085	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccgaacgcctggcacaaGcacaacaccgacgcggggct	11	18	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44057085	A	A	44057085	2	1	178	1	0	0	0	0	0	0	0	1	12909	962	34	4		4	PTPRF	1	44057085	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	9771633	44057085	205193536	13	144126											
LRRC7	57554	broad.mit.edu	37	chr1	70488886	70488886	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagactgtctggcgattgCtgcacaccatgggccaggtg	14	12	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	70488886	A	A	70488886	4	1	178	1	0	0	0	0	0	1	0	0	9107	805	28	3	1567	3	LRRC7	1	70488886	Nonsense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	26431801	70488886	178761735	14	144127											
ANKRD13C	81573	broad.mit.edu	37	chr1	70740273	70740273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctagaacagtgcacacaCtatcaaggcaatggctattt	8	9	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	70740273	A	A	70740273	1	1	178	0	1	0	0	0	0	0	0	0	643	580	20	3		3	ANKRD13C	1	70740273	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	251387	70740273	178510348	15	144128											
CLCA2	9635	broad.mit.edu	37	chr1	86898148	86898148	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttaaagaaggatgcacCtttatctacaatagcaccca	5	10	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	86898148	T	T	86898148	2	4	178	1	0	0	0	0	0	0	0	1	3489	668	24	4		4	CLCA2	1	86898148	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	16157875	86898148	162352473	16	144129											
CCBL2	56267	broad.mit.edu	37	chr1	89408625	89408625	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttagaaacagaagaaaaTagtactttaaaaattgaaat	5	2	0	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	89408625	C	C	89408625	1	2	178	0	1	0	0	0	0	0	0	0	2759	1421	49	5		5	CCBL2	1	89408625	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	2510477	89408625	159841996	17	144130											
CNN3	1266	broad.mit.edu	37	chr1	95392589	95392589	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgcaggagacggccgcGgggcgcgggcggtgcctggg	24	11	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	95392589	C	C	95392589	1	2	178	0	1	0	0	0	0	0	0	0	3643	1131	39	4		4	CNN3	1	95392589	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	5983964	95392589	153858032	18	144131											
DPYD	1806	broad.mit.edu	37	chr1	97700641	97700641	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactatgatgtgatgacagCgtcactggacaaatttcaaa	8	7	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	97700641	T	T	97700641	1	4	178	0	1	0	0	0	0	0	0	0	4785	783	27	4		4	DPYD	1	97700641	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	2308052	97700641	151549980	19	144132											
COL11A1	1301	broad.mit.edu	37	chr1	103477982	103477982	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacctaccacaggacctggtCttccagttagacccattggg	9	13	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	103477982	A	A	103477982	3	1	178	1	0	0	0	0	1	0	0	0	3699	913	32	3	4020	3	COL11A1	1	103477982	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	5777341	103477982	145772639	20	144133											
COL11A1	1301	broad.mit.edu	37	chr1	103544261	103544261	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggggatagtcttctggGgcaggttttccagtgtggtc	16	6	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	103544261	T	T	103544261	2	4	178	1	0	0	0	0	0	0	0	1	3699	1219	43	2		2	COL11A1	1	103544261	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	66279	103544261	145706360	21	144134											
SLC16A1	6566	broad.mit.edu	37	chr1	113464874	113464874	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcagcaatgataagaataTtgttttctataattacttct	5	5	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	113464874	C	C	113464874	1	2	178	0	1	0	0	0	0	0	0	0	14515	1508	52	5		5	SLC16A1	1	113464874	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	9920613	113464874	135785747	22	144135											
CASQ2	845	broad.mit.edu	37	chr1	116275698	116275698	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaagccaattaatcctgaTtggataataatttagtaggt	8	4	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	116275698	C	C	116275698	1	2	178	0	1	0	0	0	0	0	0	0	2707	1508	52	5		5	CASQ2	1	116275698	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	2810824	116275698	132974923	23	144136											
NBPF10	100132406	broad.mit.edu	37	chr1	145663098	145663098	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatataaaaaactgtaaAcaatccaggtgtttattgat	6	4	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	145663098	G	G	145663098	1	3	178	0	1	0	0	0	0	0	0	0	10287	58	2	5		5	NBPF10	1	145663098	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	29387400	145663098	103587523	24	144137											
ZNF687	57592	broad.mit.edu	37	chr1	151259952	151259952	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttgggtgatggtacaagGctgaaaggcactgtgctgcc	15	8	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	151259952	A	A	151259952	2	1	178	1	0	0	0	0	0	0	0	1	18219	1194	42	4		4	ZNF687	1	151259952	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	5596854	151259952	97990669	25	144138											
FLG	2312	broad.mit.edu	37	chr1	152286349	152286349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctctgtcttcatcatggGacctggggtgtctggagcca	14	10	5	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	152286349	T	T	152286349	3	4	178	1	0	0	0	0	1	0	0	0	5979	1174	41	3	11176	3	FLG	1	152286349	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1026397	152286349	96964272	26	144139											
ATP8B2	57198	broad.mit.edu	37	chr1	154315767	154315767	+	Frame_Shift_Del	DEL	G	-	-													aacaacatccgcaagcggatGtcggtcataggtgaggccag							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	154315767	-	-	154315767	7	5	178	1	0	1	0	1	0	0	0	0	1199	1377	48	0	1923	0	ATP8B2	1	154315767	Frame_Shift_Del	DEL	G	TCGA-55-1596-01A-01D-1040-01	2029418	154315767	94934854	27	144140											
TDRD10	126668	broad.mit.edu	37	chr1	154516513	154516513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactcatccatagcgtccGtggggaggcggggctgctgg	18	11	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	154516513	T	T	154516513	3	4	178	1	0	0	0	0	1	0	0	0	15853	1145	40	3	608	3	TDRD10	1	154516513	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	200746	154516513	94734108	28	144141											
KCNN3	3782	broad.mit.edu	37	chr1	154686464	154686465	+	Intron	DEL	GT	-	-													tgatgtgtggtgtgtgcgggGtgtgtgtgtgtgtggtgttt					rs112796362		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	154686465	-	-	154686464	6	5	178	0	1	1	0	1	0	0	0	0	8150	1276	44	0		0	KCNN3	1	154686464	Intron	DEL	GT	TCGA-55-1596-01A-01D-1040-01	169951	154686464	94564157	29	144142											
PKLR	5313	broad.mit.edu	37	chr1	155261781	155261781	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaagaaagtggtgaacgagGaaaggagaatctttgttcca	13	5	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	155261781	T	T	155261781	1	4	178	0	1	0	0	0	0	0	0	0	12071	1189	41	3		3	PKLR	1	155261781	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	575317	155261781	93988840	30	144143											
RIT1	6016	broad.mit.edu	37	chr1	155874285	155874285	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactggtcccgcatggctgtAaactctgcctagagggaaac	11	11	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	155874285	C	C	155874285	3	2	178	1	0	0	0	0	1	0	0	0	13497	359	13	5	421	5	RIT1	1	155874285	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	612504	155874285	93376336	31	144144											
KIAA0907	22889	broad.mit.edu	37	chr1	155896779	155896780	+	Intron	INS	-	TAGT	TAGT													ctcccatacaaattcgtgtaINStagttcatgaacaagggtta							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TAGT	155896780	TAGT	TAGT	155896779	6	5	178	0	1	1	1	0	0	0	0	0	8269	464	16	0		0	KIAA0907	1	155896779	Intron	INS	-	TCGA-55-1596-01A-01D-1040-01	22494	155896779	93353842	32	144145											
ARHGEF2	9181	broad.mit.edu	37	chr1	155935547	155935547	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcttggccgctcccggatGgttgctgtgggggagagatg	19	8	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	155935547	A	A	155935547	2	1	178	1	0	0	0	0	0	0	0	1	905	1335	47	4		4	ARHGEF2	1	155935547	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	38768	155935547	93315074	33	144146											
NTRK1	4914	broad.mit.edu	37	chr1	156785953	156785953	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtctctgcctcccaccCctcctcccaggctcagggga	9	19	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	156785953	G	G	156785953	1	3	178	0	1	0	0	0	0	0	0	0	10801	638	22	4		4	NTRK1	1	156785953	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	850406	156785953	92464668	34	144147											
SPTA1	6708	broad.mit.edu	37	chr1	158609691	158609691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactcaaagtcccggatgCttgtgttgaacctctgttga	10	9	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	158609691	A	A	158609691	3	1	178	1	0	0	0	0	1	0	0	0	15234	797	28	3	2491	3	SPTA1	1	158609691	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	1823738	158609691	90640930	35	144148											
CADM3	57863	broad.mit.edu	37	chr1	159163801	159163801	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctctaaagggagctgacaGatccacctctcaacgcattg	8	12	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	159163801	C	C	159163801	3	2	178	1	0	0	0	0	1	0	0	0	2594	942	33	4	786	4	CADM3	1	159163801	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	554110	159163801	90086820	36	144149											
OLFML2B	25903	broad.mit.edu	37	chr1	161953812	161953812	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaagccctcatcgtccaGggccgggtagatgagccata	13	12	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	161953812	T	T	161953812	3	4	178	1	0	0	0	0	1	0	0	0	10953	991	35	2	350	2	OLFML2B	1	161953812	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	2790011	161953812	87296809	37	144150											
RC3H1	149041	broad.mit.edu	37	chr1	173915513	173915513	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatactaactcctaagaaaTagaccttaaagttttttgtt	4	7	0	2	rs142215220	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	173915513	C	C	173915513	1	2	178	0	1	0	0	0	0	0	0	0	13274	1421	49	5		5	RC3H1	1	173915513	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	11961701	173915513	75335108	38	144151											
CACYBP	27101	broad.mit.edu	37	chr1	174978975	174978975	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccttcttatccctctaCttcctgccagtgttaacaac	3	15	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	174978975	T	T	174978975	1	4	178	0	1	0	0	0	0	0	0	0	2590	580	20	4		4	CACYBP	1	174978975	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	1063462	174978975	74271646	39	144152											
ASTN1	460	broad.mit.edu	37	chr1	176853725	176853725	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtaagcttttctttcccAaccaactacaaaaatgatct	3	11	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	176853725	G	G	176853725	1	3	178	0	1	0	0	0	0	0	0	0	1068	145	5	5		5	ASTN1	1	176853725	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	1874750	176853725	72396896	40	144153											
ASTN1	460	broad.mit.edu	37	chr1	177001659	177001659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgagggtgcgcgtgacctgGctggcaaagtcctcccctcc	13	15	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001659	T	T	177001659	3	4	178	1	0	0	0	0	1	0	0	0	1068	1194	42	3	3174	3	ASTN1	1	177001659	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	147934	177001659	72248962	41	144154											
RASAL2	9462	broad.mit.edu	37	chr1	178310735	178310735	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaaacttcacacgatgcAgaccccaggtaagagtttgt	9	11	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	178310735	G	G	178310735	3	3	178	1	0	0	0	0	1	0	0	0	13172	188	7	5	476	5	RASAL2	1	178310735	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	1309076	178310735	70939886	42	144155											
RASAL2	9462	broad.mit.edu	37	chr1	178412214	178412214	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaactatcaccattctGcctatggagcaatacaaaga	5	11	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	178412214	T	T	178412214	2	4	178	1	0	0	0	0	0	0	0	1	13172	1306	46	3		3	RASAL2	1	178412214	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	101479	178412214	70838407	43	144156											
CACNA1E	777	broad.mit.edu	37	chr1	181705621	181705621	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctagggtaaacggccagGtgtgaggcagggcagggtga	20	6	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	181705621	A	A	181705621	1	1	178	0	1	0	0	0	0	0	0	0	2568	1276	44	4		4	CACNA1E	1	181705621	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	3293407	181705621	67545000	44	144157											
CACNA1E	777	broad.mit.edu	37	chr1	181719609	181719609	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctctgattggatcctccaTaggaacgctttggggtaaat	10	9	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	181719609	C	C	181719609	1	2	178	0	1	0	0	0	0	0	0	0	2568	1421	49	5		5	CACNA1E	1	181719609	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	13988	181719609	67531012	45	144158											
FAM5C	339479	broad.mit.edu	37	chr1	190067177	190067177	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taatttggtcgtgtcataatCcattgtgtttggcaatttgg	10	5	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	190067177	G	G	190067177	3	3	178	1	0	0	0	0	1	0	0	0	5645	855	30	4	32	4	FAM5C	1	190067177	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	8347568	190067177	59183444	46	144159											
FAM5C	339479	broad.mit.edu	37	chr1	190067891	190067891	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcaaaccagctattgaggcGcatgtcattgctgataaaaa	8	8	2	2	rs147799875		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	190067891	C	C	190067891	3	2	178	1	0	0	0	0	1	0	0	0	5645	1087	38	4	746	4	FAM5C	1	190067891	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	714	190067891	59182730	47	144160											
ASPM	259266	broad.mit.edu	37	chr1	197072028	197072028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaataaaagtggctgccCtgtgcatgtgttgaatatgt	10	6	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	197072028	A	A	197072028	3	1	178	1	0	0	0	0	1	0	0	0	1060	681	24	2	4124	2	ASPM	1	197072028	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	7004137	197072028	52178593	48	144161											
PTPRC	5788	broad.mit.edu	37	chr1	198703600	198703600	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggtcttggggttaggaaaAcaaggtgttgaatggcattt	15	3	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	198703600	T	T	198703600	1	4	178	0	1	0	0	0	0	0	0	0	12905	58	2	5		5	PTPRC	1	198703600	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	1631572	198703600	50547021	49	144162											
OPTC	26254	broad.mit.edu	37	chr1	203468032	203468032	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccaccctgccactaggacAgtcaccaacactgtgttagt	8	14	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	203468032	C	C	203468032	1	2	178	0	1	0	0	0	0	0	0	0	10982	203	7	5		5	OPTC	1	203468032	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	4764432	203468032	45782589	50	144163											
LRRN2	10446	broad.mit.edu	37	chr1	204588136	204588136	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggtggtggaaggcgcGggggtggatgaaggacagcc	23	6	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	204588136	A	A	204588136	3	1	178	1	0	0	0	0	1	0	0	0	9122	1116	39	4	1160	4	LRRN2	1	204588136	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1120104	204588136	44662485	51	144164											
PTPN14	5784	broad.mit.edu	37	chr1	214556633	214556633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcacactggaaaatgccCtgggagaggaggacactcac	11	11	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	214556633	A	A	214556633	1	1	178	0	1	0	0	0	0	0	0	0	12889	696	24	2		2	PTPN14	1	214556633	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	9968497	214556633	34693988	52	144165											
ITPKB	3707	broad.mit.edu	37	chr1	226924682	226924682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcggggcgcttgaatggCggagctctgtgcctggatgt	18	9	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	226924682	A	A	226924682	3	1	178	1	0	0	0	0	1	0	0	0	7988	768	27	3	2390	3	ITPKB	1	226924682	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	12368049	226924682	22325939	53	144166											
URB2	9816	broad.mit.edu	37	chr1	229779384	229779384	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaggacttgaggctggtgAtgcagtgtattctccaggga	15	7	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	229779384	T	T	229779384	3	4	178	1	0	0	0	0	1	0	0	0	17151	333	12	5	3753	5	URB2	1	229779384	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	2854702	229779384	19471237	54	144167											
ACTN2	88	broad.mit.edu	37	chr1	236925779	236925779	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccatacatcctggcggagGagctgcgtcgggagctgccc	15	13	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	236925779	A	A	236925779	3	1	178	1	0	0	0	0	1	0	0	0	205	1175	41	4	2627	4	ACTN2	1	236925779	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	7146395	236925779	12324842	55	144168											
RYR2	6262	broad.mit.edu	37	chr1	237880668	237880668	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaaatcgatttagcctGgtaagtctccttttcatccc	6	12	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	237880668	A	A	237880668	2	1	178	1	0	0	0	0	0	0	0	1	13880	1362	47	4		4	RYR2	1	237880668	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	954889	237880668	11369953	56	144169											
RYR2	6262	broad.mit.edu	37	chr1	237923196	237923196	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttctactcagtggttgtAttttttcgaagcatttgttt	10	5	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	237923196	G	G	237923196	1	3	178	0	1	0	0	0	0	0	0	0	13880	464	16	5		5	RYR2	1	237923196	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	42528	237923196	11327425	57	144170											
FMN2	56776	broad.mit.edu	37	chr1	240308563	240308563	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctgttctttgtccttgtCcccggcatcccgccgctcct	7	19	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	240308563	A	A	240308563	1	1	178	0	1	0	0	0	0	0	0	0	6008	870	30	3		3	FMN2	1	240308563	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	2385367	240308563	8942058	58	144171											
PLD5	200150	broad.mit.edu	37	chr1	242253060	242253060	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttataagtgtgctttttccCtaaaaaaagagacatattaa	5	5	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	242253060	A	A	242253060	1	1	178	0	1	0	0	0	0	0	0	0	12144	696	24	2		2	PLD5	1	242253060	3'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	1944497	242253060	6997561	59	144172											
AKT3	10000	broad.mit.edu	37	chr1	243809209	243809209	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctacctttcttttatgatGggttgtagaggcatccatct	8	8	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	243809209	A	A	243809209	3	1	178	1	0	0	0	0	1	0	0	0	481	1348	47	4	1112	4	AKT3	1	243809209	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1556149	243809209	5441412	60	144173											
OR2L3	391192	broad.mit.edu	37	chr1	248224306	248224306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttctcggcattaggagGtgcagaagcactacttttgg	11	9	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	248224306	T	T	248224306	3	4	178	1	0	0	0	0	1	0	0	0	11102	1261	44	3	325	3	OR2L3	1	248224306	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	4415097	248224306	1026315	61	144174											
OR2T3	343173	broad.mit.edu	37	chr1	248636980	248636980	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatccagatgttcttctaccTgaccctggctggagctgagg	12	11	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	248636980	G	G	248636980	3	3	178	1	0	0	0	0	1	0	0	0	11117	1580	55	5	331	5	OR2T3	1	248636980	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	412674	248636980	613641	62	144175											
CMPK2	129607	broad.mit.edu	37	chr2	6990180	6990180	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgttcttttcctaccaTagtataaatagcttgaagca	5	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	6990180	C	C	6990180	1	2	178	0	1	0	0	0	0	0	0	0	3613	1421	49	5		5	CMPK2	2	6990180	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01		6990180	236209193	63	144176											
NT5C1B	93034	broad.mit.edu	37	chr2	18766493	18766493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatttcacacgtttttatTtgtttggagtagataggacc	9	6	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18766493	A	A	18766493	1	1	178	0	1	0	0	0	0	0	0	0	10781	1856	64	5		5	NT5C1B	2	18766493	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	11776313	18766493	224432880	64	144177											
APOB	338	broad.mit.edu	37	chr2	21266345	21266345	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtaggagagtgcacggGgctgggcgcccttccacgcc	18	12	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	21266345	T	T	21266345	1	4	178	0	1	0	0	0	0	0	0	0	787	1247	43	2		2	APOB	2	21266345	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	2499852	21266345	221933028	65	144178											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48897166	48897166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctttattaatttataaCatttctactttattatgcct	1	8	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	48897166	A	A	48897166	1	1	178	0	1	0	0	0	0	0	0	0	15435	493	17	3		3	STON1-GTF2A1L	2	48897166	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	27630821	48897166	194302207	66	144179											
STAMBP	10617	broad.mit.edu	37	chr2	74089281	74089281	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaagaaaaaaaaaaaaaaGacttttcagaattttctagg	6	3	2	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	74089281	C	C	74089281	1	2	178	0	1	0	0	0	0	0	0	0	15368	957	33	4		4	STAMBP	2	74089281	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	25192115	74089281	169110092	67	144180											
SLC4A5	57835	broad.mit.edu	37	chr2	74477490	74477490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgataattgtcggtggcatCccccagaagcccaccaaagg	10	13	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74477490	A	A	74477490	3	1	178	1	0	0	0	0	1	0	0	0	14771	855	30	3	1840	3	SLC4A5	2	74477490	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	388209	74477490	168721883	68	144181											
MRPL19	9801	broad.mit.edu	37	chr2	75881899	75881899	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaactttataatcctcgggtCcaggagattcaggtggtcaa	11	8	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	75881899	T	T	75881899	2	4	178	1	0	0	0	0	0	0	0	1	9878	842	30	4		4	MRPL19	2	75881899	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	1404409	75881899	167317474	69	144182											
EIF2AK3	9451	broad.mit.edu	37	chr2	88876190	88876190	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcttggctaaggctttaaCttctcgcattaccttttccc	6	12	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	88876190	G	G	88876190	3	3	178	1	0	0	0	0	1	0	0	0	5038	565	20	4	1456	4	EIF2AK3	2	88876190	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	12994291	88876190	154323183	70	144183											
UXS1	80146	broad.mit.edu	37	chr2	106782445	106782445	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccatgacatccatggtaTatatgtaccaactgaaatgt	6	9	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	106782445	C	C	106782445	1	2	178	0	1	0	0	0	0	0	0	0	17236	1421	49	5		5	UXS1	2	106782445	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	17906255	106782445	136416928	71	144184											
LRP1B	53353	broad.mit.edu	37	chr2	141032086	141032086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacattttggtccttcatagCgcgttggacagacacattca	8	11	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	141032086	A	A	141032086	3	1	178	1	0	0	0	0	1	0	0	0	9042	768	27	3	778	3	LRP1B	2	141032086	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	34249641	141032086	102167287	72	144185											
LRP1B	53353	broad.mit.edu	37	chr2	141773418	141773419	+	Missense_Mutation	DNP	GG	TT	TT													cgattgaatccatccatccaGgccttctcaatccttcccac							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	141773419	TT	TT	141773418	3	4	178	1	0	0	0	0	1	0	0	0	9042	987	35	2	12078	2	LRP1B	2	141773418	Missense_Mutation	DNP	GG	TCGA-55-1596-01A-01D-1040-01	741332	141773418	101425955	73	144186											
LRP1B	53353	broad.mit.edu	37	chr2	141819657	141819658	+	Missense_Mutation	DNP	TG	AT	AT													cagtgtgtctattttttcctTgatagtccactactcccaca							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	141819658	AT	AT	141819657	3	1	178	1	0	0	0	0	1	0	0	0	9042	1812	63	5	12936	5	LRP1B	2	141819657	Missense_Mutation	DNP	TG	TCGA-55-1596-01A-01D-1040-01	46239	141819657	101379716	74	144187											
TBR1	10716	broad.mit.edu	37	chr2	162279767	162279767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaagtttgtagatggaGggtgtgggggtgggcgaaaa	19	3	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	162279767	T	T	162279767	1	4	178	0	1	0	0	0	0	0	0	0	15769	1015	35	2		2	TBR1	2	162279767	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	20460110	162279767	80919606	75	144188											
FAP	2191	broad.mit.edu	37	chr2	163099771	163099771	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctaaacaatagaaaactctGatcacgttcaatccagccaa	4	11	4	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	163099771	T	T	163099771	1	4	178	0	1	0	0	0	0	0	0	0	5730	1305	45	3		3	FAP	2	163099771	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	820004	163099771	80099602	76	144189											
SCN3A	6328	broad.mit.edu	37	chr2	166010962	166010962	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttttatcactcagtacCtgagcttcttcctgttgctt	6	11	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	166010962	T	T	166010962	2	4	178	1	0	0	0	0	0	0	0	1	14031	695	24	4		4	SCN3A	2	166010962	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	2911191	166010962	77188411	77	144190											
B3GALT1	8708	broad.mit.edu	37	chr2	168725372	168725372	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccatcagatttggaagaAagtagaatgagcgcagaggt	12	7	1	5			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	168725372	C	C	168725372	1	2	178	0	1	0	0	0	0	0	0	0	1252	29	1	5		5	B3GALT1	2	168725372	5'UTR	SNP	A	TCGA-55-1596-01A-01D-1040-01	2714410	168725372	74474001	78	144191											
TTN	7273	broad.mit.edu	37	chr2	179600341	179600341	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggccaaaggaatctcaagTgttgctattttatcttcaaa	7	7	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	179600341	A	A	179600341	2	1	178	1	0	0	0	0	0	0	0	1	16861	1683	59	5		5	TTN	2	179600341	Silent	SNP	T	TCGA-55-1596-01A-01D-1040-01	10874969	179600341	63599032	79	144192											
CERKL	375298	broad.mit.edu	37	chr2	182521630	182521630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgcctccgtctgctgcgggGacgttaacagcgccggaggc	15	15	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	182521630	T	T	182521630	3	4	178	1	0	0	0	0	1	0	0	0	3298	1174	41	3	1628	3	CERKL	2	182521630	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	2921289	182521630	60677743	80	144193											
CALCRL	10203	broad.mit.edu	37	chr2	188216867	188216867	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcataaggatgtgcatgaTgtagtcatatacctcctctg	10	8	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	188216867	C	C	188216867	3	2	178	1	0	0	0	0	1	0	0	0	2606	1464	51	5	295	5	CALCRL	2	188216867	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	5695237	188216867	54982506	81	144194											
WDR75	84128	broad.mit.edu	37	chr2	190328384	190328384	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacaagctttctctaacctAttgatatttaaatacctatt	4	8	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	190328384	G	G	190328384	1	3	178	0	1	0	0	0	0	0	0	0	17452	464	16	5		5	WDR75	2	190328384	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	2111517	190328384	52870989	82	144195											
ADAM23	8745	broad.mit.edu	37	chr2	207452765	207452765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattgtagtaaaaacattgGggaagacaaactgactctgt	9	6	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	207452765	T	T	207452765	1	4	178	0	1	0	0	0	0	0	0	0	245	1247	43	2		2	ADAM23	2	207452765	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	17124381	207452765	35746608	83	144196											
FAM119A	151194	broad.mit.edu	37	chr2	208489111	208489111	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggccattccgcctgcacCccgccctctgctcagacctg	10	19	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	208489111	T	T	208489111	1	4	178	0	1	0	0	0	0	0	0	0	5459	638	22	4		4	FAM119A	2	208489111	5'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	1036346	208489111	34710262	84	144197											
CPS1	1373	broad.mit.edu	37	chr2	211455113	211455113	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtagagatattctgtagGggaaccaatgaggagagaat	13	4	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	211455113	T	T	211455113	1	4	178	0	1	0	0	0	0	0	0	0	3855	1247	43	2		2	CPS1	2	211455113	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	2966002	211455113	31744260	85	144198											
KIF1A	547	broad.mit.edu	37	chr2	241676332	241676332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggccaccagcccctcacCgcacagctcctgcaggtgcc	10	19	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	241676332	A	A	241676332	1	1	178	0	1	0	0	0	0	0	0	0	8353	667	23	1		1	KIF1A	2	241676332	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	30221219	241676332	1523041	86	144199											
IL5RA	3568	broad.mit.edu	37	chr3	3118155	3118155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaccggatgcatggtaaGcctgtaaaaatgcagtactg	11	9	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3118155	T	T	3118155	1	4	178	0	1	0	0	0	0	0	0	0	7770	986	34	3		3	IL5RA	3	3118155	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01		3118155	194904275	87	144200											
FANCD2	2177	broad.mit.edu	37	chr3	10135025	10135025	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgagagatttactgggCcctgtttcatatttattctt	9	6	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10135025	T	T	10135025	1	4	178	0	1	0	0	0	0	0	0	0	5722	754	26	4		4	FANCD2	3	10135025	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	7016870	10135025	187887405	88	144201											
TBC1D5	9779	broad.mit.edu	37	chr3	17349630	17349630	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagccgcacccaccttctgGaaagaaacaaaacaaaaatt	6	12	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	17349630	C	C	17349630	1	2	178	0	1	0	0	0	0	0	0	0	15745	1189	41	4		4	TBC1D5	3	17349630	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	7214605	17349630	180672800	89	144202											
ARPP21	10777	broad.mit.edu	37	chr3	35750491	35750491	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcatccatttagagatgacAgacgaagtaaatcaattgaa	8	6	1	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	35750491	G	G	35750491	3	3	178	1	0	0	0	0	1	0	0	0	982	180	7	5	873	5	ARPP21	3	35750491	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	18400861	35750491	162271939	90	144203											
TRAK1	22906	broad.mit.edu	37	chr3	42244272	42244272	+	Intron	SNP	C	A	A													cgcggggcctcggcccctctCtgtcctcctgggggactccc							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	42244272	A	A	42244272	1	1	178	0	1	0	0	0	0	0	0	0	16573	928	32	3		3	TRAK1	3	42244272	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	6493781	42244272	155778158	91	144204	617	2									
TRAK1	22906	broad.mit.edu	37	chr3	42244278	42244279	+	Intron	INS	-	C	C													cctcggcccctctctgtcctINScctgggggactccctttggt							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	42244279	C	C	42244278	6	5	178	0	1	1	1	0	0	0	0	0	16573	1566	54	0		0	TRAK1	3	42244278	Intron	INS	-	TCGA-55-1596-01A-01D-1040-01	6	42244278	155778152	92	144205	617	2									
CELSR3	1951	broad.mit.edu	37	chr3	48670747	48670747	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacccaggagccagtcacGcacaggataccggggtaacc	12	14	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	48670747	A	A	48670747	3	1	178	1	0	0	0	0	1	0	0	0	3253	1087	38	4		4	CELSR3	3	48670747	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	6426469	48670747	149351683	93	144206											
MAGI1	9223	broad.mit.edu	37	chr3	65456009	65456009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccatctcccagttttcaGgtagaggacctaaattatcc	8	11	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	65456009	T	T	65456009	3	4	178	1	0	0	0	0	1	0	0	0	9282	1000	35	2	3790	2	MAGI1	3	65456009	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	16785262	65456009	132566421	94	144207											
FOXP1	27086	broad.mit.edu	37	chr3	71026063	71026063	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctatgaacgtcaagatcCaagaataaacaggcctgaga	9	8	2	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71026063	A	A	71026063	1	1	178	0	1	0	0	0	0	0	0	0	6086	609	21	2		2	FOXP1	3	71026063	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	5570054	71026063	126996367	95	144208											
GPR128	84873	broad.mit.edu	37	chr3	100368684	100368684	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggctcttttcagaagagAaattgctatcttgatataat	8	6	3	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	100368684	T	T	100368684	1	4	178	0	1	0	0	0	0	0	0	0	6706	261	9	5		5	GPR128	3	100368684	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	29342621	100368684	97653746	96	144209											
SENP7	57337	broad.mit.edu	37	chr3	101080533	101080533	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtccaagatccaaactaaAagaaaattaaagaaaatata	4	5	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	101080533	G	G	101080533	1	3	178	0	1	0	0	0	0	0	0	0	14164	29	1	5		5	SENP7	3	101080533	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	711849	101080533	96941897	97	144210											
SENP7	57337	broad.mit.edu	37	chr3	101085252	101085252	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagaggaaattaagtaactTtataatcctcctgtcactta	6	8	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	101085252	G	G	101085252	1	3	178	0	1	0	0	0	0	0	0	0	14164	1856	64	5		5	SENP7	3	101085252	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	4719	101085252	96937178	98	144211											
ATG3	64422	broad.mit.edu	37	chr3	112255592	112255592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggctaacatggtgaaaCaccgtctctactaagaatat	7	10	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	112255592	A	A	112255592	1	1	178	0	1	0	0	0	0	0	0	0	1099	493	17	3		3	ATG3	3	112255592	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	11170340	112255592	85766838	99	144212											
POLQ	10721	broad.mit.edu	37	chr3	121187353	121187353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaacagtattcacatttcTggattatcttaaaaatgcag	5	7	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	121187353	A	A	121187353	1	1	178	0	1	0	0	0	0	0	0	0	12303	1595	55	5		5	POLQ	3	121187353	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	8931761	121187353	76835077	100	144213											
CASR	846	broad.mit.edu	37	chr3	121973004	121973004	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctccaaactcctagctgTctcatcccttgccctggaga	7	16	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	121973004	C	C	121973004	1	2	178	0	1	0	0	0	0	0	0	0	2708	1682	58	5		5	CASR	3	121973004	5'UTR	SNP	T	TCGA-55-1596-01A-01D-1040-01	785651	121973004	76049426	101	144214											
MYLK	4638	broad.mit.edu	37	chr3	123375980	123375980	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggcagcctaccttcaggTttctctcctaccgttgtgag	10	12	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	123375980	C	C	123375980	2	2	178	1	0	0	0	0	0	0	0	1	10150	1722	60	5		5	MYLK	3	123375980	Silent	SNP	T	TCGA-55-1596-01A-01D-1040-01	1402976	123375980	74646450	102	144215											
KIAA1257	57501	broad.mit.edu	37	chr3	128706348	128706348	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaacatctgcaaaacccGtgtgtgcacatgccaattag	8	12	1	0	rs112129449	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	128706348	A	A	128706348	1	1	178	0	1	0	0	0	0	0	0	0	8288	1160	40	4		4	KIAA1257	3	128706348	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	5330368	128706348	69316082	103	144216											
COL6A6	131873	broad.mit.edu	37	chr3	130292827	130292827	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattgacaaagtagatcttgTtttccttatggatggttcaa	8	5	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	130292827	A	A	130292827	3	1	178	1	0	0	0	0	1	0	0	0	3735	1725	60	5	3031	5	COL6A6	3	130292827	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	1586479	130292827	67729603	104	144217											
CLSTN2	64084	broad.mit.edu	37	chr3	140122320	140122320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttaagaagctcccaggCaatgctgatgctgctggctc	10	10	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	140122320	A	A	140122320	1	1	178	0	1	0	0	0	0	0	0	0	3594	725	25	3		3	CLSTN2	3	140122320	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	9829493	140122320	57900110	105	144218											
XRN1	54464	broad.mit.edu	37	chr3	142103586	142103586	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtatgcagatattctaggaCgataatcgtcaactatcgta	8	7	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	142103586	T	T	142103586	1	4	178	0	1	0	0	0	0	0	0	0	17586	551	19	4		4	XRN1	3	142103586	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	1981266	142103586	55918844	106	144219											
TRPC1	7220	broad.mit.edu	37	chr3	142503717	142503717	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaatctcagtttggcAgaatcattcacacacctttt	4	13	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	142503717	T	T	142503717	4	4	178	1	0	0	0	0	0	1	0	0	16703	180	7	5	1052	5	TRPC1	3	142503717	Nonsense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	400131	142503717	55518713	107	144220											
GMPS	8833	broad.mit.edu	37	chr3	155615703	155615703	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagattcttcactgattgttCcttaaatcacagtgctatta	6	8	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	155615703	T	T	155615703	1	4	178	0	1	0	0	0	0	0	0	0	6562	870	30	4		4	GMPS	3	155615703	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	13111986	155615703	42406727	108	144221											
ECE2	9718	broad.mit.edu	37	chr3	183995661	183995661	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagcaagggccagggactcCccctcagcagttaacgtaat	11	13	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	183995661	T	T	183995661	1	4	178	0	1	0	0	0	0	0	0	0	4930	638	22	4		4	ECE2	3	183995661	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	28379958	183995661	14026769	109	144222											
MASP1	5648	broad.mit.edu	37	chr3	187003540	187003540	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatatgccaccctggaaggGtctaatttcatattgccttg	8	10	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	187003540	C	C	187003540	1	2	178	0	1	0	0	0	0	0	0	0	9414	1276	44	4		4	MASP1	3	187003540	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	3007879	187003540	11018890	110	144223											
ATP13A5	344905	broad.mit.edu	37	chr3	193019010	193019010	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcatacccaatagagcAgtaatgcactgataaactgg	8	8	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	193019010	T	T	193019010	3	4	178	1	0	0	0	0	1	0	0	0	1131	188	7	5	917	5	ATP13A5	3	193019010	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	6015470	193019010	5003420	111	144224											
TNK2	10188	broad.mit.edu	37	chr3	195613814	195613814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggggcgttcgaggctgccCccctcccacctcctcaccca	11	20	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	195613814	A	A	195613814	1	1	178	0	1	0	0	0	0	0	0	0	16441	638	22	2		2	TNK2	3	195613814	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	2594804	195613814	2408616	112	144225											
PDE6B	5158	broad.mit.edu	37	chr4	647477	647477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctcagatgaaacctggCcacggagccaccaatcaggg	11	13	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	647477	A	A	647477	1	1	178	0	1	0	0	0	0	0	0	0	11740	754	26	3		3	PDE6B	4	647477	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01		647477	190506799	113	144226											
RNF212	285498	broad.mit.edu	37	chr4	1066945	1066945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcttagacaaggtcaacCatgggatgaaacagaaagaa	13	6	1	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1066945	A	A	1066945	3	1	178	1	0	0	0	0	1	0	0	0	13587	595	21	2	286	2	RNF212	4	1066945	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	419468	1066945	190087331	114	144227											
MAN2B2	23324	broad.mit.edu	37	chr4	6612754	6612754	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctacagcagcccctcgcGgccccctacaggcatgccca	9	20	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	6612754	A	A	6612754	1	1	178	0	1	0	0	0	0	0	0	0	9309	1131	39	4		4	MAN2B2	4	6612754	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	5545809	6612754	184541522	115	144228											
ABLIM2	84448	broad.mit.edu	37	chr4	8022097	8022097	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaagtagaatatttcaaGcatgaaaagcttatttgcag	8	5	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	8022097	A	A	8022097	1	1	178	0	1	0	0	0	0	0	0	0	95	986	34	4		4	ABLIM2	4	8022097	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	1409343	8022097	183132179	116	144229											
CC2D2A	57545	broad.mit.edu	37	chr4	15569349	15569349	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaacgaacagtttgccAtacgactacggctgaaggac	9	10	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	15569349	G	G	15569349	3	3	178	1	0	0	0	0	1	0	0	0	2754	217	8	5	3639	5	CC2D2A	4	15569349	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	7547252	15569349	175584927	117	144230											
CORIN	10699	broad.mit.edu	37	chr4	47708333	47708333	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctactctatggactttcAagaaaactaccaacttttgc	5	11	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	47708333	C	C	47708333	1	2	178	0	1	0	0	0	0	0	0	0	3784	145	5	5		5	CORIN	4	47708333	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	32138984	47708333	143445943	118	144231											
PROL1	58503	broad.mit.edu	37	chr4	71275347	71275347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacctcgactctttccggGttatccaaacctacatttcc	4	15	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	71275347	T	T	71275347	3	4	178	1	0	0	0	0	1	0	0	0	12660	1261	44	3	308	3	PROL1	4	71275347	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	23567014	71275347	119878929	119	144232											
ADAMTS3	9508	broad.mit.edu	37	chr4	73149140	73149140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcatatgcatttggacCtcccactgaagagatgctac	9	11	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	73149140	T	T	73149140	3	4	178	1	0	0	0	0	1	0	0	0	267	681	24	4	290	4	ADAMTS3	4	73149140	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	1873793	73149140	118005136	120	144233											
ADAMTS3	9508	broad.mit.edu	37	chr4	73156846	73156846	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtacacatttctacctgcAaagcctagacttttctgctc	6	12	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	73156846	T	T	73156846	1	4	178	0	1	0	0	0	0	0	0	0	267	145	5	5		5	ADAMTS3	4	73156846	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	7706	73156846	117997430	121	144234											
ADAMTS3	9508	broad.mit.edu	37	chr4	73186680	73186680	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaatttgggattaaagtAtttaaacaatgattcaataa	7	3	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	73186680	G	G	73186680	1	3	178	0	1	0	0	0	0	0	0	0	267	464	16	5		5	ADAMTS3	4	73186680	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	29834	73186680	117967596	122	144235											
BBS7	55212	broad.mit.edu	37	chr4	122782798	122782798	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacccctcccagttccagccTtgcaatcttcggcccgggta	8	17	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	122782798	A	A	122782798	3	1	178	1	0	0	0	0	1	0	0	0	1346	1608	56	5	2014	5	BBS7	4	122782798	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	49596118	122782798	68371478	123	144236											
TMEM184C	55751	broad.mit.edu	37	chr4	148555131	148555131	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaataggttgggtaggaTattgaatttctcctactagg	10	6	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	148555131	C	C	148555131	1	2	178	0	1	0	0	0	0	0	0	0	16229	1421	49	5		5	TMEM184C	4	148555131	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	25772333	148555131	42599145	124	144237											
ASB5	140458	broad.mit.edu	37	chr4	177190046	177190046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccacttgaaacaagagaGgattatcataaacatacctt	5	9	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	177190046	T	T	177190046	1	4	178	0	1	0	0	0	0	0	0	0	1030	1015	35	2		2	ASB5	4	177190046	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	28634915	177190046	13964230	125	144238											
VEGFC	7424	broad.mit.edu	37	chr4	177604975	177604975	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacagacttttgtctttGttagcatggacccacaaggg	10	8	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	177604975	T	T	177604975	1	4	178	0	1	0	0	0	0	0	0	0	17279	1392	48	3		3	VEGFC	4	177604975	3'UTR	SNP	G	TCGA-55-1596-01A-01D-1040-01	414929	177604975	13549301	126	144239											
SNX25	83891	broad.mit.edu	37	chr4	186244912	186244912	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattgttgataaaagaggaAgaaaaacatgcctcacagat	8	5	1	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	186244912	T	T	186244912	3	4	178	1	0	0	0	0	1	0	0	0	15010	69	3	5	1245	5	SNX25	4	186244912	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	8639937	186244912	4909364	127	144240											
IRX1	79192	broad.mit.edu	37	chr5	3599727	3599727	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggccgaggacgacgaggAgatcgacctggaaagcatcg	16	9	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3599727	T	T	3599727	3	4	178	1	0	0	0	0	1	0	0	0	7913	304	11	5	671	5	IRX1	5	3599727	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01		3599727	177315533	128	144241											
SRD5A1	6715	broad.mit.edu	37	chr5	6634007	6634007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtccccggcccccggccccCtaccctactcccggcccggc	9	26	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6634007	T	T	6634007	1	4	178	0	1	0	0	0	0	0	0	0	15256	696	24	4		4	SRD5A1	5	6634007	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	3034280	6634007	174281253	129	144242											
SEMA5A	9037	broad.mit.edu	37	chr5	9136543	9136543	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagacagcgtgacagtgTgactgaggatcgccagggga	17	8	0	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	9136543	A	A	9136543	1	1	178	0	1	0	0	0	0	0	0	0	14150	1711	59	5		5	SEMA5A	5	9136543	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	2502536	9136543	171778717	130	144243											
PRDM9	56979	broad.mit.edu	37	chr5	23524575	23524575	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggtatggggatgaataCggccaggaactgggcatcaa	15	7	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	23524575	A	A	23524575	4	1	178	1	0	0	0	0	0	1	0	0	12569	547	19	3	1117	3	PRDM9	5	23524575	Nonsense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	14388032	23524575	157390685	131	144244											
CDH9	1007	broad.mit.edu	37	chr5	26915812	26915812	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcattgtcattgatatcaTgtattttaatgataaattcc	5	6	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	26915812	C	C	26915812	3	2	178	1	0	0	0	0	1	0	0	0	3147	1464	51	5	1960	5	CDH9	5	26915812	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	3391237	26915812	153999448	132	144245											
C7	730	broad.mit.edu	37	chr5	40955390	40955390	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacaatttatcttttgactGtttccatagtttggcttttt	5	8	1	1	rs113256961	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	40955390	C	C	40955390	1	2	178	0	1	0	0	0	0	0	0	0	2400	1392	48	4		4	C7	5	40955390	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	14039578	40955390	139959870	133	144246											
APC	324	broad.mit.edu	37	chr5	112162746	112162746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatttaagttaccaacttGgtaccagtttgttttatttt	6	5	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	112162746	T	T	112162746	1	4	178	0	1	0	0	0	0	0	0	0	765	1363	47	2		2	APC	5	112162746	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	71207356	112162746	68752514	134	144247											
ALDH7A1	501	broad.mit.edu	37	chr5	125912853	125912853	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaattgaatgccgtgatgaTtccaaccaggcctacgggat	11	9	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	125912853	A	A	125912853	3	1	178	1	0	0	0	0	1	0	0	0	504	1493	52	5	1103	5	ALDH7A1	5	125912853	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	13750107	125912853	55002407	135	144248											
HARS	3035	broad.mit.edu	37	chr5	140070879	140070879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctcctccagcgccgcaCgctctgccatcccggctgtc	9	21	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	140070879	A	A	140070879	3	1	178	1	0	0	0	0	1	0	0	0	7025	536	19	3	1570	3	HARS	5	140070879	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	14158026	140070879	40844381	136	144249											
SPRY4	81848	broad.mit.edu	37	chr5	141693948	141693948	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaggcagggcagcaccacGgagagagcacccatgaagga	15	11	0	2	rs145360326	byFrequency	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	141693948	A	A	141693948	2	1	178	1	0	0	0	0	0	0	0	1	15226	1103	39	4		4	SPRY4	5	141693948	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	1623069	141693948	39221312	137	144250											
GABRA1	2554	broad.mit.edu	37	chr5	161277951	161277951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttttcatttattttatcGggggaagaaaattgtcctca	7	6	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	161277951	T	T	161277951	1	4	178	0	1	0	0	0	0	0	0	0	6220	1131	39	1		1	GABRA1	5	161277951	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	19584003	161277951	19637309	138	144251											
DOCK2	1794	broad.mit.edu	37	chr5	169483833	169483833	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggaggaaccagagcatgcAtcggccagcctcagaatggg	14	11	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	169483833	T	T	169483833	1	4	178	0	1	0	0	0	0	0	0	0	4727	232	8	5		5	DOCK2	5	169483833	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	8205882	169483833	11431427	139	144252											
FAM153A	285596	broad.mit.edu	37	chr5	177166286	177166286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagcctagagaacacttgTagaaaggcaccaggtttttg	10	7	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	177166286	C	C	177166286	1	2	178	0	1	0	0	0	0	0	0	0	5506	1653	57	5		5	FAM153A	5	177166286	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	7682453	177166286	3748974	140	144253											
EXOC2	55770	broad.mit.edu	37	chr6	592614	592614	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcaagtccaaggttgaggCcaaagggaaatgctggcata	13	7	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	592614	T	T	592614	1	4	178	0	1	0	0	0	0	0	0	0	5344	754	26	4		4	EXOC2	6	592614	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01		592614	170522453	141	144254											
JARID2	3720	broad.mit.edu	37	chr6	15497370	15497370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagcacctcaaatctcaGggcatcaccatggacgagct	9	12	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	15497370	T	T	15497370	3	4	178	1	0	0	0	0	1	0	0	0	8015	991	35	2	1940	2	JARID2	6	15497370	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	14904756	15497370	155617697	142	144255											
HIST1H4E	8367	broad.mit.edu	37	chr6	26204930	26204930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaggcgctaagcgtcacCgtaaggtcctgcgagataac	13	10	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	26204930	A	A	26204930	3	1	178	1	0	0	0	0	1	0	0	0	7236	652	23	1	60	1	HIST1H4E	6	26204930	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	10707560	26204930	144910137	143	144256											
ABCF1	23	broad.mit.edu	37	chr6	30557817	30557817	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtctacaaactgtacctaGaggaaccgagaatgagggag	12	7	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30557817	T	T	30557817	1	4	178	0	1	0	0	0	0	0	0	0	65	957	33	3		3	ABCF1	6	30557817	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	4352887	30557817	140557250	144	144257											
GLP1R	2740	broad.mit.edu	37	chr6	39040614	39040614	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgttggctgccttgccaggGaaaggccctgctttctccct	11	14	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39040614	A	A	39040614	1	1	178	0	1	0	0	0	0	0	0	0	6516	1189	41	4		4	GLP1R	6	39040614	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	8482797	39040614	132074453	145	144258											
KIF6	221458	broad.mit.edu	37	chr6	39545945	39545945	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtttaatcacctacaaatgGcaaagaggcagagaaaatgt	9	7	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	39545945	C	C	39545945	1	2	178	0	1	0	0	0	0	0	0	0	8378	1218	42	4		4	KIF6	6	39545945	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	505331	39545945	131569122	146	144259											
DAAM2	23500	broad.mit.edu	37	chr6	39869182	39869182	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggccttctcagaggcccgGcaggatctagaggccatgag	14	12	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	39869182	C	C	39869182	2	2	178	1	0	0	0	0	0	0	0	1	4249	1190	42	4		4	DAAM2	6	39869182	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	323237	39869182	131245885	147	144260											
PKHD1	5314	broad.mit.edu	37	chr6	51917746	51917746	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccagccccatctgttttcTagagccaaggcaggcaaaaa	8	13	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	51917746	C	C	51917746	1	2	178	0	1	0	0	0	0	0	0	0	12066	1537	53	5		5	PKHD1	6	51917746	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	12048564	51917746	119197321	148	144261											
HMGCLL1	54511	broad.mit.edu	37	chr6	55364093	55364093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcccagagcacaagacaCatacctaaattaaaaataca	4	11	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55364093	A	A	55364093	3	1	178	1	0	0	0	0	1	0	0	0	7297	478	17	3	491	3	HMGCLL1	6	55364093	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	3446347	55364093	115750974	149	144262											
TBX18	9096	broad.mit.edu	37	chr6	85422434	85422434	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtagttttacagctttgattCtggaagacacaaacttaaca	7	7	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	85422434	T	T	85422434	1	4	178	0	1	0	0	0	0	0	0	0	15775	928	32	4		4	TBX18	6	85422434	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	30058341	85422434	85692633	150	144263											
EPHA7	2045	broad.mit.edu	37	chr6	93956601	93956601	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgttcaaattttggcctttCagcacgctccttttgccaac	6	13	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	93956601	T	T	93956601	3	4	178	1	0	0	0	0	1	0	0	0	5214	835	29	4	373	4	EPHA7	6	93956601	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	8534167	93956601	77158466	151	144264											
PTPRK	5796	broad.mit.edu	37	chr6	128404945	128404945	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaggatgttccttgaagaGattttactggtacgggacca	11	7	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	128404945	C	C	128404945	3	2	178	1	0	0	0	0	1	0	0	0	12913	942	33	4	2942	4	PTPRK	6	128404945	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	34448344	128404945	42710122	152	144265											
ARID1B	57492	broad.mit.edu	37	chr6	157495270	157495270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtacttccttcgcctctgCacgcggtgtgaggtctgcct	12	13	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	157495270	A	A	157495270	1	1	178	0	1	0	0	0	0	0	0	0	916	725	25	3		3	ARID1B	6	157495270	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	29090325	157495270	13619797	153	144266											
THBS2	7058	broad.mit.edu	37	chr6	169621556	169621556	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcttgggcctgtgagtcaGgtgccacctataggccgtgt	14	10	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	169621556	C	C	169621556	3	2	178	1	0	0	0	0	1	0	0	0	15977	991	35	4	190	4	THBS2	6	169621556	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	12126286	169621556	1493511	154	144267											
THSD7A	221981	broad.mit.edu	37	chr7	11501681	11501681	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcctcacaggccttctcttCatagaggggatctgtgcagt	11	11	4	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11501681	T	T	11501681	3	4	178	1	0	0	0	0	1	0	0	0	16002	835	29	4	2587	4	THSD7A	7	11501681	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01		11501681	147636982	155	144268											
THSD7A	221981	broad.mit.edu	37	chr7	11633039	11633039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggcatgtttttgagcaGgggctccactctgaccactc	10	12	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11633039	T	T	11633039	2	4	178	1	0	0	0	0	0	0	0	1	16002	987	35	2		2	THSD7A	7	11633039	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	131358	11633039	147505624	156	144269											
C7orf10	79783	broad.mit.edu	37	chr7	40899891	40899891	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggttagtcattaacaggcttCctgctttccttctcctttgg	8	11	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	40899891	A	A	40899891	1	1	178	0	1	0	0	0	0	0	0	0	2401	870	30	3		3	C7orf10	7	40899891	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	29266852	40899891	118238772	157	144270											
ZNF479	90827	broad.mit.edu	37	chr7	57188680	57188680	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttgggtagttgacaaacAttggttaacttcactataac	8	6	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	57188680	G	G	57188680	3	3	178	1	0	0	0	0	1	0	0	0	18060	217	8	5	1136	5	ZNF479	7	57188680	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	16288789	57188680	101949983	158	144271											
SEMA3A	10371	broad.mit.edu	37	chr7	83634563	83634563	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaactgcacagagggttGgcatcccaacccctgagatg	10	12	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	83634563	A	A	83634563	1	1	178	0	1	0	0	0	0	0	0	0	14137	1363	47	4		4	SEMA3A	7	83634563	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	26445883	83634563	75504100	159	144272											
AKAP9	10142	broad.mit.edu	37	chr7	91642045	91642045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttttccttgtcatagaaCccacagaggaaggtgatttg	9	7	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	91642045	T	T	91642045	1	4	178	0	1	0	0	0	0	0	0	0	459	522	18	4		4	AKAP9	7	91642045	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	8007482	91642045	67496618	160	144273											
RELN	5649	broad.mit.edu	37	chr7	103629460	103629460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaccaagcgcatcgctgGggccagggttgtcatggttc	15	11	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	103629460	T	T	103629460	1	4	178	0	1	0	0	0	0	0	0	0	13328	1247	43	2		2	RELN	7	103629460	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	11987415	103629460	55509203	161	144274											
NDUFA5	4698	broad.mit.edu	37	chr7	123190666	123190666	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagacaaaccatacaaatttCcataggttaaaatattacca	3	8	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	123190666	G	G	123190666	1	3	178	0	1	0	0	0	0	0	0	0	10363	870	30	4		4	NDUFA5	7	123190666	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	19561206	123190666	35947997	162	144275											
PLXNA4	91584	broad.mit.edu	37	chr7	131870004	131870004	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttggctttcaagagtcaGggaagggaaacagaggtgca	14	7	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	131870004	T	T	131870004	1	4	178	0	1	0	0	0	0	0	0	0	12217	1015	35	2		2	PLXNA4	7	131870004	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	8679338	131870004	27268659	163	144276											
PLXNA4	91584	broad.mit.edu	37	chr7	131887644	131887644	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttgggaatggcagtggGgacagaaggggcccagagag	20	6	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	131887644	T	T	131887644	1	4	178	0	1	0	0	0	0	0	0	0	12217	1247	43	2		2	PLXNA4	7	131887644	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	17640	131887644	27251019	164	144277											
CHRM2	1129	broad.mit.edu	37	chr7	136699878	136699878	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacactgtgattggttactGgcctttgggacctgtggtgt	13	8	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	136699878	C	C	136699878	3	2	178	1	0	0	0	0	1	0	0	0	3408	1357	47	4	268	4	CHRM2	7	136699878	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	4812234	136699878	22438785	165	144278											
DGKI	9162	broad.mit.edu	37	chr7	137282530	137282530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacgaataaaaagaagtgCcacaagaaaacaataagaaa	7	6	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	137282530	A	A	137282530	1	1	178	0	1	0	0	0	0	0	0	0	4511	754	26	3		3	DGKI	7	137282530	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	582652	137282530	21856133	166	144279											
TTC26	79989	broad.mit.edu	37	chr7	138851548	138851548	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcaggagggttttctGgaatacagactagtataatt	10	6	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	138851548	C	C	138851548	1	2	178	0	1	0	0	0	0	0	0	0	16820	1363	47	4		4	TTC26	7	138851548	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	1569018	138851548	20287115	167	144280											
CUL1	8454	broad.mit.edu	37	chr7	148457367	148457367	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgctacacctaagtatattCtgtgaaatataaccaaaaaa	4	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	148457367	G	G	148457367	1	3	178	0	1	0	0	0	0	0	0	0	4087	928	32	4		4	CUL1	7	148457367	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	9605819	148457367	10681296	168	144281											
UNC5D	137970	broad.mit.edu	37	chr8	35605995	35605995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaattctcattcaaatatGgcccctcctctacatacttc	2	15	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	35605995	T	T	35605995	1	4	178	0	1	0	0	0	0	0	0	0	17121	1363	47	2		2	UNC5D	8	35605995	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01		35605995	110758027	169	144282											
ZMAT4	79698	broad.mit.edu	37	chr8	40554749	40554749	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggtctccccacgatcacTgttcctgcacgtacctgtgg	10	15	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	40554749	A	A	40554749	1	1	178	0	1	0	0	0	0	0	0	0	17820	1595	55	5		5	ZMAT4	8	40554749	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	4948754	40554749	105809273	170	144283											
CA8	767	broad.mit.edu	37	chr8	61193624	61193624	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taccttcctcgtagccccacTccacaccctcctcttcttcc	2	22	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61193624	A	A	61193624	3	1	178	1	0	0	0	0	1	0	0	0	2549	1551	54	5	821	5	CA8	8	61193624	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	20638875	61193624	85170398	171	144284											
ARFGEF1	10565	broad.mit.edu	37	chr8	68139538	68139538	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaccatatctcgaattgtTggagacctaaaaatattaat	5	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	68139538	A	A	68139538	2	1	178	1	0	0	0	0	0	0	0	1	854	1799	63	5		5	ARFGEF1	8	68139538	Silent	SNP	T	TCGA-55-1596-01A-01D-1040-01	6945914	68139538	78224484	172	144285											
SULF1	23213	broad.mit.edu	37	chr8	70539460	70539460	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggtgttttattcttccCaatgactctatccattgtga	7	9	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	70539460	A	A	70539460	2	1	178	1	0	0	0	0	0	0	0	1	15488	581	21	2		2	SULF1	8	70539460	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	2399922	70539460	75824562	173	144286											
SLCO5A1	81796	broad.mit.edu	37	chr8	70594557	70594557	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcttcctgtcagattcctAtggggcatggtgagagaagg	14	8	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	70594557	C	C	70594557	3	2	178	1	0	0	0	0	1	0	0	0	14845	446	16	5	918	5	SLCO5A1	8	70594557	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	55097	70594557	75769465	174	144287											
NCOA2	10499	broad.mit.edu	37	chr8	71036821	71036821	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catcctttatcactacgtttGataaaaacaaacagaaagct	4	9	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	71036821	C	C	71036821	1	2	178	0	1	0	0	0	0	0	0	0	10324	1305	45	4		4	NCOA2	8	71036821	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	442264	71036821	75327201	175	144288											
KCNB2	9312	broad.mit.edu	37	chr8	73847965	73847965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaatgagtgcggaagggGggaatggaatttaaatatac	14	3	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	73847965	T	T	73847965	1	4	178	0	1	0	0	0	0	0	0	0	8083	1247	43	2		2	KCNB2	8	73847965	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	2811144	73847965	72516057	176	144289											
ZFHX4	79776	broad.mit.edu	37	chr8	77763566	77763566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgtgaatggagaactgtGggcagagagcgaaactatgt	15	7	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	77763566	T	T	77763566	3	4	178	1	0	0	0	0	1	0	0	0	17761	1357	47	2	4443	2	ZFHX4	8	77763566	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	3915601	77763566	68600456	177	144290											
CA1	759	broad.mit.edu	37	chr8	86253806	86253806	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagttatcattttgatctAtataaacaggagaactctta	5	6	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	86253806	G	G	86253806	1	3	178	0	1	0	0	0	0	0	0	0	2536	464	16	5		5	CA1	8	86253806	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	8490240	86253806	60110216	178	144291											
CNGB3	54714	broad.mit.edu	37	chr8	87591351	87591351	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacctggctttcttcatgagGatcctttcagaatctggata	8	9	4	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	87591351	C	C	87591351	3	2	178	1	0	0	0	0	1	0	0	0	3633	1164	41	4	530	4	CNGB3	8	87591351	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1337545	87591351	58772671	179	144292											
GEM	2669	broad.mit.edu	37	chr8	95265333	95265333	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accatcagggttcgttcataTgtatcttctagagaagaaag	9	7	4	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	95265333	C	C	95265333	2	2	178	1	0	0	0	0	0	0	0	1	6393	1451	51	5		5	GEM	8	95265333	Silent	SNP	T	TCGA-55-1596-01A-01D-1040-01	7673982	95265333	51098689	180	144293											
DPYS	1807	broad.mit.edu	37	chr8	105459557	105459557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcaaatgcgtacctctgCaattaagtctccattttccg	6	11	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	105459557	A	A	105459557	3	1	178	1	0	0	0	0	1	0	0	0	4786	710	25	3	989	3	DPYS	8	105459557	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	10194224	105459557	40904465	181	144294											
ZFPM2	23414	broad.mit.edu	37	chr8	106813655	106813655	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaaaaagactcagctctttCtcacgaaccagagaccagag	8	11	3	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	106813655	G	G	106813655	3	3	178	1	0	0	0	0	1	0	0	0	17784	913	32	4	1375	4	ZFPM2	8	106813655	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	1354098	106813655	39550367	182	144295											
RSPO2	340419	broad.mit.edu	37	chr8	108913209	108913209	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagatactgggcagagcagCacaaaggctgcacaccagtg	12	11	0	2	rs72680426	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	108913209	G	G	108913209	1	3	178	0	1	0	0	0	0	0	0	0	13821	725	25	4		4	RSPO2	8	108913209	3'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	2099554	108913209	37450813	183	144296											
NUDCD1	84955	broad.mit.edu	37	chr8	110287767	110287767	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaatgttacattaagcaatTatacaaattatacaatcagt	4	5	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	110287767	A	A	110287767	1	1	178	0	1	0	0	0	0	0	0	0	10817	1769	61	5		5	NUDCD1	8	110287767	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	1374558	110287767	36076255	184	144297											
PKHD1L1	93035	broad.mit.edu	37	chr8	110477349	110477349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatccatctctggagtttGtaatgacagatgtgggggtt	13	6	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	110477349	T	T	110477349	3	4	178	1	0	0	0	0	1	0	0	0	12067	1377	48	3	8482	3	PKHD1L1	8	110477349	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	189582	110477349	35886673	185	144298											
CSMD3	114788	broad.mit.edu	37	chr8	113246674	113246674	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaataagatatatgcgtaAcattaggcgagcttcctggc	9	7	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	113246674	G	G	113246674	2	3	178	1	0	0	0	0	0	0	0	1	3980	40	2	5		5	CSMD3	8	113246674	Silent	SNP	A	TCGA-55-1596-01A-01D-1040-01	2769325	113246674	33117348	186	144299											
CSMD3	114788	broad.mit.edu	37	chr8	113254006	113254006	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatctttcaccaatatttTagaaccagctatgaaaagaa	6	7	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	113254006	A	A	113254006	4	1	178	1	0	0	0	0	0	1	0	0	3980	1763	61	5	736	5	CSMD3	8	113254006	Nonsense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	7332	113254006	33110016	187	144300											
CSMD3	114788	broad.mit.edu	37	chr8	113694628	113694628	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgtggtttcttgtacaTaatgatgatgaggttctatt	10	3	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	113694628	A	A	113694628	1	1	178	0	1	0	0	0	0	0	0	0	3980	1421	49	5		5	CSMD3	8	113694628	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	440622	113694628	32669394	188	144301											
ENPP2	5168	broad.mit.edu	37	chr8	120633841	120633841	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcttacaggatttccaaTgaagaaagctaaaatctcac	6	8	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	120633841	A	A	120633841	1	1	178	0	1	0	0	0	0	0	0	0	5172	1479	51	5		5	ENPP2	8	120633841	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	6939213	120633841	25730181	189	144302											
TAF2	6873	broad.mit.edu	37	chr8	120814149	120814149	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttcctcatatcatgaGtatacactgtctccaccaaa	3	12	4	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	120814149	C	C	120814149	3	2	178	1	0	0	0	0	1	0	0	0	15643	1029	36	4	3006	4	TAF2	8	120814149	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	180308	120814149	25549873	190	144303											
KIAA0196	9897	broad.mit.edu	37	chr8	126067960	126067960	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatcactgtctaatagtccTggaatgaacaaagataacag	7	7	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	126067960	A	A	126067960	1	1	178	0	1	0	0	0	0	0	0	0	8231	1595	55	5		5	KIAA0196	8	126067960	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	5253811	126067960	20296062	191	144304											
TG	7038	broad.mit.edu	37	chr8	134024061	134024061	+	Intron	DEL	T	-	-													aggatgcccctaaggctgccTttggggatattgggtaatac							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	134024061	-	-	134024061	6	5	178	0	1	1	0	1	0	0	0	0	15936	1624	56	0		0	TG	8	134024061	Intron	DEL	T	TCGA-55-1596-01A-01D-1040-01	7956101	134024061	12339961	192	144305											
COL22A1	169044	broad.mit.edu	37	chr8	139611252	139611252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagatcactgaaagggagacCttggccctgggtggcccatg	14	10	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	139611252	T	T	139611252	1	4	178	0	1	0	0	0	0	0	0	0	3713	696	24	4		4	COL22A1	8	139611252	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	5587191	139611252	6752770	193	144306											
DENND3	22898	broad.mit.edu	37	chr8	142170817	142170817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggccgagcccaccggcGgtcctggcagcagaaactca	15	14	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	142170817	T	T	142170817	3	4	178	1	0	0	0	0	1	0	0	0	4472	1116	39	1	1073	1	DENND3	8	142170817	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	2559565	142170817	4193205	194	144307											
RPS6	6194	broad.mit.edu	37	chr9	19378288	19378288	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccttccaaaggcacataTttatcttctgatatgcacac	6	11	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	19378288	C	C	19378288	1	2	178	0	1	0	0	0	0	0	0	0	13760	1508	52	5		5	RPS6	9	19378288	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01		19378288	121835143	195	144308											
IFNA2	3440	broad.mit.edu	37	chr9	21385084	21385084	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattgaagatctgctggatcAtctcatggaggacagggatg	14	6	3	2	rs150636116		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	21385084	T	T	21385084	3	4	178	1	0	0	0	0	1	0	0	0	7607	217	8	5	325	5	IFNA2	9	21385084	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	2006796	21385084	119828347	196	144309											
TAF1L	138474	broad.mit.edu	37	chr9	32631306	32631306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgcattgactggagtgtgGaaagggtgtgtatttggaag	16	2	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	32631306	T	T	32631306	3	4	178	1	0	0	0	0	1	0	0	0	15642	1165	41	3	1212	3	TAF1L	9	32631306	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	11246222	32631306	108582125	197	144310											
KIAA1539	80256	broad.mit.edu	37	chr9	35107649	35107650	+	Missense_Mutation	DNP	CC	AA	AA													ccctaggccagaggctacccCcattgcccaccccagccact							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AA	35107650	AA	AA	35107649	3	1	178	1	0	0	0	0	1	0	0	0	8312	623	22	2	1021	2	KIAA1539	9	35107649	Missense_Mutation	DNP	CC	TCGA-55-1596-01A-01D-1040-01	2476343	35107649	106105782	198	144311											
UNC13B	10497	broad.mit.edu	37	chr9	35384224	35384224	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctctttttcttcccctttAtttgtttctcaccctcagaa	2	13	4	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	35384224	G	G	35384224	1	3	178	0	1	0	0	0	0	0	0	0	17111	464	16	5		5	UNC13B	9	35384224	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	276575	35384224	105829207	199	144312											
SYK	6850	broad.mit.edu	37	chr9	93629549	93629549	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcactcagctcccgcccGcccagtctgccctgtgtgtg	11	19	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	93629549	T	T	93629549	1	4	178	0	1	0	0	0	0	0	0	0	15557	1102	38	3		3	SYK	9	93629549	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	58245325	93629549	47583882	200	144313											
IARS	3376	broad.mit.edu	37	chr9	94973152	94973152	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatattcaaagtcttcacGgggatgtcttctgtaatttc	7	8	6	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	94973152	A	A	94973152	2	1	178	1	0	0	0	0	0	0	0	1	7543	1103	39	4		4	IARS	9	94973152	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	1343603	94973152	46240279	201	144314											
IARS	3376	broad.mit.edu	37	chr9	95012034	95012034	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattacatttgttatgactaTactaataaaaataaattata	2	3	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	95012034	C	C	95012034	1	2	178	0	1	0	0	0	0	0	0	0	7543	1421	49	5		5	IARS	9	95012034	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	38882	95012034	46201397	202	144315											
PHF2	5253	broad.mit.edu	37	chr9	96416742	96416742	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggcctcggccaacatctcCctgtatgagcgctggcggtc	12	16	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	96416742	G	G	96416742	2	3	178	1	0	0	0	0	0	0	0	1	11925	610	22	4		4	PHF2	9	96416742	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	1404708	96416742	44796689	203	144316											
KIAA1958	158405	broad.mit.edu	37	chr9	115407879	115407879	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcccaagatgtaattctctAaagaagggaatggcaaatta	8	6	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	115407879	G	G	115407879	1	3	178	0	1	0	0	0	0	0	0	0	8334	377	13	5		5	KIAA1958	9	115407879	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	18991137	115407879	25805552	204	144317											
FKBP15	23307	broad.mit.edu	37	chr9	115965313	115965313	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgatataaagaagaatcctAtactgtagacaagcaacgac	7	8	0	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	115965313	G	G	115965313	2	3	178	1	0	0	0	0	0	0	0	1	5962	456	16	5		5	FKBP15	9	115965313	Silent	SNP	A	TCGA-55-1596-01A-01D-1040-01	557434	115965313	25248118	205	144318											
C9orf43	257169	broad.mit.edu	37	chr9	116185836	116185836	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgctttttactgaagctggGatgggtctaaacagtgtgct	12	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	116185836	T	T	116185836	1	4	178	0	1	0	0	0	0	0	0	0	2509	1189	41	3		3	C9orf43	9	116185836	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	220523	116185836	25027595	206	144319											
PPP6C	5537	broad.mit.edu	37	chr9	127923295	127923295	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagaggactccaaatatttAcatttttaagaaataaagtg	6	4	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	127923295	G	G	127923295	1	3	178	0	1	0	0	0	0	0	0	0	12508	406	14	5		5	PPP6C	9	127923295	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	11737459	127923295	13290136	207	144320											
FAM129B	64855	broad.mit.edu	37	chr9	130341170	130341170	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaccccgtgtgcctTgtgtcctggggacttgtgca	12	10	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	130341170	C	C	130341170	1	2	178	0	1	0	0	0	0	0	0	0	5483	1827	63	5		5	FAM129B	9	130341170	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	2417875	130341170	10872261	208	144321											
COL5A1	1289	broad.mit.edu	37	chr9	137688344	137688344	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcactttgtcctggggtggGctggggccagggaggcacgc	19	10	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	137688344	T	T	137688344	1	4	178	0	1	0	0	0	0	0	0	0	3728	1218	42	3		3	COL5A1	9	137688344	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	7347174	137688344	3525087	209	144322											
LARP4B	23185	broad.mit.edu	37	chr10	910104	910105	+	Missense_Mutation	DNP	CA	AT	AT													ggtggccagccacctcctccCatgcagcactcacaccgtca							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	910105	AT	AT	910104	3	1	178	1	0	0	0	0	1	0	0	0	8703	595	21	2	2028	2	LARP4B	10	910104	Missense_Mutation	DNP	CA	TCGA-55-1596-01A-01D-1040-01		910104	134624643	210	144323											
SFMBT2	57713	broad.mit.edu	37	chr10	7326244	7326244	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacagtctggcgttccctcCaccccatccttgcccagccc	7	20	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	7326244	G	G	7326244	1	3	178	0	1	0	0	0	0	0	0	0	14271	609	21	4		4	SFMBT2	10	7326244	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	6416140	7326244	128208503	211	144324											
TRDMT1	1787	broad.mit.edu	37	chr10	17195622	17195622	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaattggtaagggatttgTagatattctcaacctgtaag	9	5	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	17195622	C	C	17195622	3	2	178	1	0	0	0	0	1	0	0	0	16591	1638	57	5	224	5	TRDMT1	10	17195622	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	9869378	17195622	118339125	212	144325											
SLC39A12	221074	broad.mit.edu	37	chr10	18289671	18289671	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcagatggcctagccaTaggagcagccttctcatcat	9	11	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	18289671	C	C	18289671	3	2	178	1	0	0	0	0	1	0	0	0	14729	1406	49	5	1714	5	SLC39A12	10	18289671	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	1094049	18289671	117245076	213	144326											
RAB18	22931	broad.mit.edu	37	chr10	27822645	27822645	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttaatgcttatttaacaaAtgactccttttatttcagtt	3	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	27822645	G	G	27822645	1	3	178	0	1	0	0	0	0	0	0	0	13011	116	4	5		5	RAB18	10	27822645	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	9532974	27822645	107712102	214	144327											
ZNF438	220929	broad.mit.edu	37	chr10	31137569	31137569	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgatcacaaccctatgcaCttctttcagatggccaaaat	6	12	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31137569	T	T	31137569	3	4	178	1	0	0	0	0	1	0	0	0	18037	565	20	4	729	4	ZNF438	10	31137569	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	3314924	31137569	104397178	215	144328											
NRP1	8829	broad.mit.edu	37	chr10	33543158	33543158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcccacagtcatcaaaatAtaggggatttaagatgcatt	10	7	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	33543158	G	G	33543158	1	3	178	0	1	0	0	0	0	0	0	0	10755	464	16	5		5	NRP1	10	33543158	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	2405589	33543158	101991589	216	144329											
ANKRD30A	91074	broad.mit.edu	37	chr10	37481828	37481828	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtatatttctgtcacgTtggcatgataacaaatacag	8	6	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	37481828	C	C	37481828	1	2	178	0	1	0	0	0	0	0	0	0	658	1740	60	5		5	ANKRD30A	10	37481828	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	3938670	37481828	98052919	217	144330											
PCDH15	65217	broad.mit.edu	37	chr10	55587214	55587214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaggcggcggcggcggcgGgggcgctgccactggtgcag	23	12	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55587214	A	A	55587214	3	1	178	1	0	0	0	0	1	0	0	0	11605	1232	43	4	3188	4	PCDH15	10	55587214	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	18105386	55587214	79947533	218	144331											
PCDH15	65217	broad.mit.edu	37	chr10	55721652	55721652	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacgacttgcaggtaatcCctaaaataaaattattaatt	4	8	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55721652	A	A	55721652	4	1	178	1	0	0	0	0	0	1	0	0	11605	637	22	2	4665	2	PCDH15	10	55721652	Nonsense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	134438	55721652	79813095	219	144332											
PCDH15	65217	broad.mit.edu	37	chr10	55955474	55955474	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttgtccagagctactattCttaaaggtgaagtcaaattg	8	8	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	55955474	G	G	55955474	3	3	178	1	0	0	0	0	1	0	0	0	11605	913	32	4	6329	4	PCDH15	10	55955474	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	233822	55955474	79579273	220	144333											
HKDC1	80201	broad.mit.edu	37	chr10	71008170	71008170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaatattttgccatcaccCctgcttcaggtacccaaaac	4	14	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71008170	A	A	71008170	1	1	178	0	1	0	0	0	0	0	0	0	7260	638	22	2		2	HKDC1	10	71008170	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	15052696	71008170	64526577	221	144334											
LRIT1	26103	broad.mit.edu	37	chr10	85991733	85991733	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctttgactccaaaggcctGaaagtccacactggaacgag	9	13	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	85991733	A	A	85991733	4	1	178	1	0	0	0	0	0	1	0	0	9034	1299	45	4	53	4	LRIT1	10	85991733	Nonsense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	14983563	85991733	49543014	222	144335											
ABCC2	1244	broad.mit.edu	37	chr10	101590383	101590383	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatctgccctgaaatgcGctttgatgccagctgagtga	12	10	2	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	101590383	C	C	101590383	1	2	178	0	1	0	0	0	0	0	0	0	53	1102	38	4		4	ABCC2	10	101590383	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	15598650	101590383	33944364	223	144336											
SORCS1	114815	broad.mit.edu	37	chr10	108430970	108430970	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atttgatacaccaaatggctCcaggagataattgcacaagc	8	9	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	108430970	G	G	108430970	1	3	178	0	1	0	0	0	0	0	0	0	15044	870	30	4		4	SORCS1	10	108430970	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	6840587	108430970	27103777	224	144337											
XPNPEP1	7511	broad.mit.edu	37	chr10	111642213	111642213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggatggtctcgctcacagCatagctggccttgtcactga	13	11	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	111642213	A	A	111642213	3	1	178	1	0	0	0	0	1	0	0	0	17569	710	25	3	1030	3	XPNPEP1	10	111642213	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	3211243	111642213	23892534	225	144338											
GPAM	57678	broad.mit.edu	37	chr10	113920368	113920368	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtctgacatacctatgaTggcctccatgataaagacat	8	9	1	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	113920368	C	C	113920368	3	2	178	1	0	0	0	0	1	0	0	0	6653	1464	51	5	761	5	GPAM	10	113920368	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	2278155	113920368	21614379	226	144339											
NRAP	4892	broad.mit.edu	37	chr10	115394055	115394055	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaagcccaataaagtggCaattctcaaatggctacgta	7	11	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	115394055	T	T	115394055	1	4	178	0	1	0	0	0	0	0	0	0	10733	725	25	4		4	NRAP	10	115394055	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	1473687	115394055	20140692	227	144340											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236530	118236530	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaattactcattaaatcggGggatctaccgtgtctttttc	8	8	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	118236530	A	A	118236530	1	1	178	0	1	0	0	0	0	0	0	0	12247	1247	43	4		4	PNLIPRP3	10	118236530	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	2842475	118236530	17298217	228	144341											
KCNK18	338567	broad.mit.edu	37	chr10	118969655	118969656	+	Missense_Mutation	DNP	CC	GT	GT													gggatactgttttagaacacCctaacttcttcctgttcttc							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	GT	118969656	GT	GT	118969655	3	3	178	1	0	0	0	0	1	0	0	0	8135	623	22	4	1010	4	KCNK18	10	118969655	Missense_Mutation	DNP	CC	TCGA-55-1596-01A-01D-1040-01	733125	118969655	16565092	229	144342											
NLRP14	338323	broad.mit.edu	37	chr11	7065231	7065231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggtaagtgtgttagggCcattccctggaagtgccctg	13	9	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	7065231	A	A	7065231	1	1	178	0	1	0	0	0	0	0	0	0	10571	754	26	3		3	NLRP14	11	7065231	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01		7065231	127941285	230	144343											
LDHC	3948	broad.mit.edu	37	chr11	18434300	18434300	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcagctaattgagaagctAattgaggatgatgaaaactc	11	5	0	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	18434300	G	G	18434300	2	3	178	1	0	0	0	0	0	0	0	1	8774	349	13	5		5	LDHC	11	18434300	Silent	SNP	A	TCGA-55-1596-01A-01D-1040-01	11369069	18434300	116572216	231	144344											
NELL1	4745	broad.mit.edu	37	chr11	20968951	20968951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaaaaggatcacattcttCctgagaatcagtgctgccgt	9	10	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20968951	A	A	20968951	3	1	178	1	0	0	0	0	1	0	0	0	10428	855	30	3	1183	3	NELL1	11	20968951	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	2534651	20968951	114037565	232	144345											
SCYL1	57410	broad.mit.edu	37	chr11	65305955	65305955	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggaagaagcgcgaggagcGgcggcgggagatggaggcca	21	9	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	65305955	C	C	65305955	3	2	178	1	0	0	0	0	1	0	0	0	14060	1116	39	4	2415	4	SCYL1	11	65305955	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	44337004	65305955	69700561	233	144346											
PACS1	55690	broad.mit.edu	37	chr11	66009153	66009153	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccaaggccggggaagaccAtgggccaccaggcctcccgt	13	17	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	66009153	G	G	66009153	1	3	178	0	1	0	0	0	0	0	0	0	11466	232	8	5		5	PACS1	11	66009153	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	703198	66009153	68997363	234	144347											
PC	5091	broad.mit.edu	37	chr11	66618624	66618624	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgtcgcccgtgtatgagaTggcagcctccaccacgcctc	10	17	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	66618624	C	C	66618624	3	2	178	1	0	0	0	0	1	0	0	0	11591	1464	51	5	1454	5	PC	11	66618624	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	609471	66618624	68387892	235	144348											
C11orf24	53838	broad.mit.edu	37	chr11	68031301	68031301	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccagccagctcctcaggCtgctaatggttccctcctgc	9	17	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	68031301	A	A	68031301	1	1	178	0	1	0	0	0	0	0	0	0	1647	812	28	3		3	C11orf24	11	68031301	5'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	1412677	68031301	66975215	236	144349											
PDE2A	5138	broad.mit.edu	37	chr11	72293701	72293701	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atggcaggtgggggatccgtCacccagaatgtaccacagtt	13	10	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72293701	T	T	72293701	1	4	178	0	1	0	0	0	0	0	0	0	11730	841	29	4		4	PDE2A	11	72293701	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	4262400	72293701	62712815	237	144350											
RSF1	51773	broad.mit.edu	37	chr11	77445837	77445837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgaaggaagattcggcCacctcgttggttctgcagct	11	11	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77445837	A	A	77445837	1	1	178	0	1	0	0	0	0	0	0	0	13810	609	21	2		2	RSF1	11	77445837	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	5152136	77445837	57560679	238	144351											
FAT3	120114	broad.mit.edu	37	chr11	92526040	92526040	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaacccactgtatgaagcGtctgtgtttgaatctgctgc	9	11	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	92526040	A	A	92526040	2	1	178	1	0	0	0	0	0	0	0	1	5748	1132	40	4		4	FAT3	11	92526040	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	15080203	92526040	42480476	239	144352											
PGR	5241	broad.mit.edu	37	chr11	100998942	100998942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgcccgggcgccatcggcGcgtcctgctccaccagggcg	15	18	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	100998942	T	T	100998942	3	4	178	1	0	0	0	0	1	0	0	0	11900	1087	38	3	1973	3	PGR	11	100998942	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	8472902	100998942	34007574	240	144353											
OR10G9	219870	broad.mit.edu	37	chr11	123893833	123893833	+	Frame_Shift_Del	DEL	G	-	-													gtttacgtgctcactgtgctGgggaacctcctcatcctgct							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	123893833	-	-	123893833	7	5	178	1	0	1	0	1	0	0	0	0	10998	1335	47	0	116	0	OR10G9	11	123893833	Frame_Shift_Del	DEL	G	TCGA-55-1596-01A-01D-1040-01	22894891	123893833	11112683	241	144354											
OR10G7	390265	broad.mit.edu	37	chr11	123909592	123909592	+	Frame_Shift_Del	DEL	C	-	-													accagcaggatgaggaggttCcccagcacagtgagcacgta							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	123909592	-	-	123909592	7	5	178	1	0	1	0	1	0	0	0	0	10996	842	30	0	822	0	OR10G7	11	123909592	Frame_Shift_Del	DEL	C	TCGA-55-1596-01A-01D-1040-01	15759	123909592	11096924	242	144355											
VWF	7450	broad.mit.edu	37	chr12	6059022	6059022	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacatactgcagcctggcaGtgatgtcgttgcactcaggc	12	11	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	6059022	A	A	6059022	3	1	178	1	0	0	0	0	1	0	0	0	17373	1029	36	4	266	4	VWF	12	6059022	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01		6059022	127792873	243	144356											
ITPR2	3709	broad.mit.edu	37	chr12	26596529	26596529	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaggcttcatctccttcatCtggatccgatcctggtttga	8	11	4	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26596529	T	T	26596529	3	4	178	1	0	0	0	0	1	0	0	0	7991	913	32	4	1756	4	ITPR2	12	26596529	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	20537507	26596529	107255366	244	144357											
PDZRN4	29951	broad.mit.edu	37	chr12	41967041	41967041	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaagcttcctgatcaagaGaaggcagtcagcgaacacat	10	10	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	41967041	T	T	41967041	3	4	178	1	0	0	0	0	1	0	0	0	11804	933	33	3	2571	3	PDZRN4	12	41967041	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	15370512	41967041	91884854	245	144358											
ADAMTS20	80070	broad.mit.edu	37	chr12	43825245	43825245	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcactcaagtgatctacatTcagctgacaccatacctgcc	5	14	4	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	43825245	G	G	43825245	3	3	178	1	0	0	0	0	1	0	0	0	266	1783	62	5	2652	5	ADAMTS20	12	43825245	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	1858204	43825245	90026650	246	144359											
FAM186B	84070	broad.mit.edu	37	chr12	49998266	49998266	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctaattcttcctggaagCggttgatgacacaattgaca	8	9	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	49998266	T	T	49998266	3	4	178	1	0	0	0	0	1	0	0	0	5558	768	27	4	2553	4	FAM186B	12	49998266	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	6173021	49998266	83853629	247	144360											
SLC4A8	9498	broad.mit.edu	37	chr12	51868922	51868922	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttttggtcctgtattctcTttttcaccaccttcatcctc	3	14	4	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	51868922	A	A	51868922	3	1	178	1	0	0	0	0	1	0	0	0	14773	1609	56	5	2166	5	SLC4A8	12	51868922	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	1870656	51868922	81982973	248	144361											
KRT79	338785	broad.mit.edu	37	chr12	53223860	53223860	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtcaaggtgcccacttTgccatgcagatccatccggc	11	14	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	53223860	C	C	53223860	3	2	178	1	0	0	0	0	1	0	0	0	8563	1821	63	5	829	5	KRT79	12	53223860	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	1354938	53223860	80628035	249	144362											
IFNG	3458	broad.mit.edu	37	chr12	68549134	68549134	+	Nonstop_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcaggcaggacaaccatTactgggatgctcttcgacct	10	11	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	68549134	A	A	68549134	4	1	178	1	0	0	0	0	0	0	0	0	7618	1761	61	5	4	5	IFNG	12	68549134	Nonstop_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	15325274	68549134	65302761	250	144363											
KCNC2	3747	broad.mit.edu	37	chr12	75444442	75444442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaccagcatgcctgacCatgtttgggggtacatatcc	9	14	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	75444442	A	A	75444442	3	1	178	1	0	0	0	0	1	0	0	0	8085	595	21	2	651	2	KCNC2	12	75444442	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	6895308	75444442	58407453	251	144364											
C12orf63	374467	broad.mit.edu	37	chr12	97158873	97158873	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagtgaagctgtgctgGcaattaacttacttattgga	11	6	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	97158873	T	T	97158873	3	4	178	1	0	0	0	0	1	0	0	0	1719	1203	42	3	3535	3	C12orf63	12	97158873	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	21714431	97158873	36693022	252	144365											
DEPDC4	120863	broad.mit.edu	37	chr12	100657686	100657686	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatcctgaaaaaaattaaAtatgcatttctaacaaatct	3	7	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	100657686	G	G	100657686	1	3	178	0	1	0	0	0	0	0	0	0	4481	116	4	5		5	DEPDC4	12	100657686	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	3498813	100657686	33194209	253	144366											
CKAP4	10970	broad.mit.edu	37	chr12	106632981	106632981	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtccgcctccacttggcTgactgaggctttcaggttgt	11	12	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	106632981	C	C	106632981	3	2	178	1	0	0	0	0	1	0	0	0	3475	1580	55	5	182	5	CKAP4	12	106632981	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	5975295	106632981	27218914	254	144367											
NCOR2	9612	broad.mit.edu	37	chr12	124832634	124832634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagaaagcccagcctcgGtttccccatctgtaaaacgg	8	15	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	124832634	T	T	124832634	1	4	178	0	1	0	0	0	0	0	0	0	10331	1276	44	3		3	NCOR2	12	124832634	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	18199653	124832634	9019261	255	144368											
FNDC3A	22862	broad.mit.edu	37	chr13	49752748	49752748	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggagaagatcttgcttaCacagtgaaaaatctcagacg	10	7	2	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	49752748	A	A	49752748	4	1	178	1	0	0	0	0	0	1	0	0	6027	489	17	3	1636	3	FNDC3A	13	49752748	Nonsense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01		49752748	65417130	256	144369											
DIAPH3	81624	broad.mit.edu	37	chr13	60667931	60667931	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaattctacatgcactAcaaatggaaaaatcaataat	5	8	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	60667931	T	T	60667931	1	4	178	0	1	0	0	0	0	0	0	0	4560	406	14	5		5	DIAPH3	13	60667931	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	10915183	60667931	54501947	257	144370											
DACH1	1602	broad.mit.edu	37	chr13	72255950	72255950	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggtggaattatcccaggaGacatgagaccagggacagaa	13	7	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72255950	T	T	72255950	3	4	178	1	0	0	0	0	1	0	0	0	4253	942	33	3	1219	3	DACH1	13	72255950	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	11588019	72255950	42913928	258	144371											
DOCK9	23348	broad.mit.edu	37	chr13	99575505	99575505	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttctaagtctgtaaaattGatgtttaaatctagagtgaa	7	4	4	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	99575505	A	A	99575505	1	1	178	0	1	0	0	0	0	0	0	0	4734	1305	45	4		4	DOCK9	13	99575505	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	27319555	99575505	15594373	259	144372											
PPP2R3C	55012	broad.mit.edu	37	chr14	35590990	35590990	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccactccgcctcctttgtcGggaggtttcacagaagcgga	11	13	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	35590990	C	C	35590990	1	2	178	0	1	0	0	0	0	0	0	0	12491	1131	39	4		4	PPP2R3C	14	35590990	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01		35590990	71758550	260	144373											
FSCB	84075	broad.mit.edu	37	chr14	44973886	44973886	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgatcctaattttactgctgGaattcctgccacctgcggtg	9	12	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44973886	A	A	44973886	3	1	178	1	0	0	0	0	1	0	0	0	6126	1174	41	4	176	4	FSCB	14	44973886	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	9382896	44973886	62375654	261	144374											
CNIH	10175	broad.mit.edu	37	chr14	54896978	54896978	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattttaccttttcaacttaCccatataggtagtaaaaaaa	3	8	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	54896978	G	G	54896978	5	3	178	1	0	0	0	0	0	0	1	0	3634	521	18	4	34	4	CNIH	14	54896978	Splice_Site	SNP	C	TCGA-55-1596-01A-01D-1040-01	9923092	54896978	52452562	262	144375											
DACT1	51339	broad.mit.edu	37	chr14	59113521	59113521	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctagcgactccgagtactCggccgagtgcgagtccctgt	14	13	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	59113521	A	A	59113521	4	1	178	1	0	0	0	0	0	1	0	0	4255	893	31	3	2194	3	DACT1	14	59113521	Nonsense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	4216543	59113521	48236019	263	144376											
WDR89	112840	broad.mit.edu	37	chr14	64065716	64065716	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagcatgccctccctgaagGctagtcacatgggtcagtcc	11	14	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	64065716	C	C	64065716	3	2	178	1	0	0	0	0	1	0	0	0	17463	1194	42	4	222	4	WDR89	14	64065716	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	4952195	64065716	43283824	264	144377											
MAP3K9	4293	broad.mit.edu	37	chr14	71267478	71267478	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgcacagcccaattcacCaggatgtctgggggaatcct	10	12	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71267478	A	A	71267478	2	1	178	1	0	0	0	0	0	0	0	1	9349	581	21	2		2	MAP3K9	14	71267478	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	7201762	71267478	36082062	265	144378											
PCNX	22990	broad.mit.edu	37	chr14	71444881	71444881	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatcagagtgacttgagTagagcatcaagtgttcagtc	12	6	3	5			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	71444881	C	C	71444881	2	2	178	1	0	0	0	0	0	0	0	1	11685	1635	57	5		5	PCNX	14	71444881	Silent	SNP	T	TCGA-55-1596-01A-01D-1040-01	177403	71444881	35904659	266	144379											
RGS6	9628	broad.mit.edu	37	chr14	72945023	72945023	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacattgtttgaaaatgtcCaaagtggctgaaaggtatgt	11	4	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	72945023	G	G	72945023	2	3	178	1	0	0	0	0	0	0	0	1	13418	581	21	4		4	RGS6	14	72945023	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	1500142	72945023	34404517	267	144380											
TTLL5	23093	broad.mit.edu	37	chr14	76186179	76186179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatacaaccggtgagtactGggcctttttccttcttgact	9	10	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	76186179	A	A	76186179	1	1	178	0	1	0	0	0	0	0	0	0	16856	1363	47	4		4	TTLL5	14	76186179	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	3241156	76186179	31163361	268	144381											
ANGEL1	23357	broad.mit.edu	37	chr14	77257806	77257806	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccctctcagatccttgactgGattgcttcagaaggatccag	9	12	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	77257806	C	C	77257806	1	2	178	0	1	0	0	0	0	0	0	0	608	1189	41	4		4	ANGEL1	14	77257806	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	1071627	77257806	30091734	269	144382											
RCOR1	23186	broad.mit.edu	37	chr14	103129146	103129146	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgagttctttccaatttAttgctgttttcagcagcact	6	8	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	103129146	T	T	103129146	1	4	178	0	1	0	0	0	0	0	0	0	13290	464	16	5		5	RCOR1	14	103129146	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	25871340	103129146	4220394	270	144383											
AHNAK2	113146	broad.mit.edu	37	chr14	105407783	105407783	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accttcatgaacaacagattCcacaatgggaaatgtggaag	9	8	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	105407783	T	T	105407783	3	4	178	1	0	0	0	0	1	0	0	0	415	864	30	4	3386	4	AHNAK2	14	105407783	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	2278637	105407783	1941757	271	144384											
MKRN3	7681	broad.mit.edu	37	chr15	23810997	23810997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcaggtgctgaggcagCaagggagggtgtgtctgggc	20	8	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	23810997	T	T	23810997	3	4	178	1	0	0	0	0	1	0	0	0	9701	710	25	4	70	4	MKRN3	15	23810997	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01		23810997	78720395	272	144385											
APBA2	321	broad.mit.edu	37	chr15	29409389	29409389	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcagggccgcccgggccCagaggagctgggagccgggc	21	14	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	29409389	T	T	29409389	1	4	178	0	1	0	0	0	0	0	0	0	759	609	21	4		4	APBA2	15	29409389	3'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	5598392	29409389	73122003	273	144386											
RYR3	6263	broad.mit.edu	37	chr15	33825665	33825665	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttttgagaaggaccctgaaTgcgttactcatttgggattc	10	8	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	33825665	A	A	33825665	1	1	178	0	1	0	0	0	0	0	0	0	13881	1479	51	5		5	RYR3	15	33825665	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	4416276	33825665	68705727	274	144387											
LTK	4058	broad.mit.edu	37	chr15	41799788	41799788	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaccccacacaccataagGaggctcagtgttgaggttgc	12	11	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	41799788	A	A	41799788	2	1	178	1	0	0	0	0	0	0	0	1	9167	1161	41	4		4	LTK	15	41799788	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	7974123	41799788	60731604	275	144388											
UBR1	197131	broad.mit.edu	37	chr15	43398254	43398254	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgcctgcagttgccgaccCccggccagaggcaagcggaa	14	15	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	43398254	A	A	43398254	1	1	178	0	1	0	0	0	0	0	0	0	17027	638	22	2		2	UBR1	15	43398254	5'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	1598466	43398254	59133138	276	144389											
SLC24A5	283652	broad.mit.edu	37	chr15	48426860	48426860	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatttattaatcagtagaaAaacaacatgtattcaattta	3	4	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	48426860	G	G	48426860	1	3	178	0	1	0	0	0	0	0	0	0	14583	29	1	5		5	SLC24A5	15	48426860	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	5028606	48426860	54104532	277	144390											
SLC12A1	6557	broad.mit.edu	37	chr15	48527321	48527321	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattcaaactgtaggtttctGcaagatttcctgatgattta	8	6	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	48527321	C	C	48527321	1	2	178	0	1	0	0	0	0	0	0	0	14495	1334	46	4		4	SLC12A1	15	48527321	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	100461	48527321	54004071	278	144391											
GLDN	342035	broad.mit.edu	37	chr15	51643270	51643270	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaactcaagatttttttgTcttcataataaaacaaaaga	4	5	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	51643270	G	G	51643270	1	3	178	0	1	0	0	0	0	0	0	0	6498	1682	58	5		5	GLDN	15	51643270	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	3115949	51643270	50888122	279	144392											
HERC1	8925	broad.mit.edu	37	chr15	63961971	63961971	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacatcacaatcttcttataGaagaatatgcaacctggaag	6	8	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	63961971	A	A	63961971	1	1	178	0	1	0	0	0	0	0	0	0	7124	957	33	4		4	HERC1	15	63961971	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	12318701	63961971	38569421	280	144393											
CSNK1G1	53944	broad.mit.edu	37	chr15	64495340	64495340	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtgtggctttctcgagTtattgcagatgcaccagaat	11	7	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	64495340	C	C	64495340	3	2	178	1	0	0	0	0	1	0	0	0	3988	1725	60	5	232	5	CSNK1G1	15	64495340	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	533369	64495340	38036052	281	144394											
ZNF609	23060	broad.mit.edu	37	chr15	64937304	64937305	+	Intron	INS	-	CCTT	CCTT													cctccctccctccctccctcINSccttccttccttccttcctt					rs7163358	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	CCTT	64937305	CCTT	CCTT	64937304	6	5	178	0	1	1	1	0	0	0	0	0	18162	870	30	0		0	ZNF609	15	64937304	Intron	INS	-	TCGA-55-1596-01A-01D-1040-01	441964	64937304	37594088	282	144395											
RPL4	6124	broad.mit.edu	37	chr15	66795413	66795413	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacgtttccaaaagcaccctGgccagagcggtgagtcccac	10	14	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	66795413	C	C	66795413	3	2	178	1	0	0	0	0	1	0	0	0	13706	1357	47	4	1050	4	RPL4	15	66795413	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1858109	66795413	35735979	283	144396											
THSD4	79875	broad.mit.edu	37	chr15	72039385	72039385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccgactggacctcggtaCgcaggcagggcagcccgctc	15	15	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	72039385	A	A	72039385	1	1	178	0	1	0	0	0	0	0	0	0	16001	551	19	3		3	THSD4	15	72039385	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	5243972	72039385	30492007	284	144397											
DNAJA4	55466	broad.mit.edu	37	chr15	78558628	78558628	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggtcaaatctcagcacTcacaagagtaagttcatgcc	7	11	5	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	78558628	G	G	78558628	1	3	178	0	1	0	0	0	0	0	0	0	4654	1551	54	5		5	DNAJA4	15	78558628	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	6519243	78558628	23972764	285	144398											
TMC3	342125	broad.mit.edu	37	chr15	81625717	81625717	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcactgaggctggttccaaCtggttaatgggtatggattg	13	6	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	81625717	G	G	81625717	1	3	178	0	1	0	0	0	0	0	0	0	16109	580	20	4		4	TMC3	15	81625717	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	3067089	81625717	20905675	286	144399											
FAM154B	283726	broad.mit.edu	37	chr15	82574915	82574915	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaggtcaagaaagtaccaGagtatgtgcctcctacaggt	11	9	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	82574915	T	T	82574915	4	4	178	1	0	0	0	0	0	1	0	0	5510	943	33	3	719	3	FAM154B	15	82574915	Nonsense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	949198	82574915	19956477	287	144400											
C15orf42	90381	broad.mit.edu	37	chr15	90168849	90168849	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcctggggacagtttgggTtgagttccaggaagagagtc	15	7	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	90168849	A	A	90168849	3	1	178	1	0	0	0	0	1	0	0	0	1809	1722	60	5	5386	5	C15orf42	15	90168849	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	7593934	90168849	12362543	288	144401											
CHD2	1106	broad.mit.edu	37	chr15	93563198	93563198	+	Intron	SNP	A	T	T													ttgtagtgaaagtgaaattcAtccatttcttgcagtcatca							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	93563198	T	T	93563198	1	4	178	0	1	0	0	0	0	0	0	0	3356	232	8	5		5	CHD2	15	93563198	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	3394349	93563198	8968194	289	144402	618	2									
CHD2	1106	broad.mit.edu	37	chr15	93563201	93563201	+	Intron	SNP	C	T	T													tagtgaaagtgaaattcatcCatttcttgcagtcatcagat							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	93563201	T	T	93563201	1	4	178	0	1	0	0	0	0	0	0	0	3356	609	21	4		4	CHD2	15	93563201	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	3	93563201	8968191	290	144403	618	2									
SPATA8	145946	broad.mit.edu	37	chr15	97328458	97328458	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttaccacctggaactcacCtggaaagggcaatcagctgg	10	13	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	97328458	A	A	97328458	1	1	178	0	1	0	0	0	0	0	0	0	15131	696	24	2		2	SPATA8	15	97328458	3'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	3765257	97328458	5202934	291	144404											
TTC23	64927	broad.mit.edu	37	chr15	99759062	99759062	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcgtgtaagtgttacgtgAatagtatttctatttgtaaa	10	3	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	99759062	C	C	99759062	1	2	178	0	1	0	0	0	0	0	0	0	16816	261	9	5		5	TTC23	15	99759062	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	2430604	99759062	2772330	292	144405											
LUC7L	55692	broad.mit.edu	37	chr16	242974	242974	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctctctcctcctcaagCgatcctgatttctcttctcc	3	18	5	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	242974	T	T	242974	3	4	178	1	0	0	0	0	1	0	0	0	9169	768	27	4	407	4	LUC7L	16	242974	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01		242974	90111779	293	144406											
AXIN1	8312	broad.mit.edu	37	chr16	343556	343556	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcggcgcgcctcctccagCtgggttagggggttgggagc	18	12	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	343556	T	T	343556	2	4	178	1	0	0	0	0	0	0	0	1	1241	796	28	4		4	AXIN1	16	343556	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	100582	343556	90011197	294	144407											
BAIAP3	8938	broad.mit.edu	37	chr16	1392740	1392740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatacggccatgagccaGcgcgggcgatccggcttcct	15	13	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1392740	T	T	1392740	3	4	178	1	0	0	0	0	1	0	0	0	1309	962	34	3	1241	3	BAIAP3	16	1392740	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1049184	1392740	88962013	295	144408											
C16orf5	29965	broad.mit.edu	37	chr16	4563767	4563767	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggggcattgggtgaccCggcggctcatagggtggggg	22	8	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	4563767	A	A	4563767	2	1	178	1	0	0	0	0	0	0	0	1	1831	639	23	1		1	C16orf5	16	4563767	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	3171027	4563767	85790986	296	144409											
GRIN2A	2903	broad.mit.edu	37	chr16	10032335	10032336	+	Missense_Mutation	DNP	TG	CT	CT													agacatgccagtcataatccTgcatgatcttcagcatgacc							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	CT	10032336	CT	CT	10032335	3	2	178	1	0	0	0	0	1	0	0	0	6845	1580	55	5	3950	5	GRIN2A	16	10032335	Missense_Mutation	DNP	TG	TCGA-55-1596-01A-01D-1040-01	5468568	10032335	80322418	297	144410											
TXNDC11	51061	broad.mit.edu	37	chr16	11827847	11827847	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagttcttacctccgatgaTacagatatattacaggaaaa	6	7	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	11827847	C	C	11827847	3	2	178	1	0	0	0	0	1	0	0	0	16918	1406	49	5	2356	5	TXNDC11	16	11827847	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	1795512	11827847	78526906	298	144411											
KIAA0430	9665	broad.mit.edu	37	chr16	15729639	15729639	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgtgctcttccaaatgCcctggagccccgcttgtgaa	10	12	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	15729639	T	T	15729639	2	4	178	1	0	0	0	0	0	0	0	1	8247	726	26	4		4	KIAA0430	16	15729639	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	3901792	15729639	74625114	299	144412											
VWA3A	146177	broad.mit.edu	37	chr16	22151410	22151410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgacaaattgaggtcagGgtaactgggatcctgcgtga	14	6	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	22151410	T	T	22151410	1	4	178	0	1	0	0	0	0	0	0	0	17367	1247	43	2		2	VWA3A	16	22151410	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	6421771	22151410	68203343	300	144413											
HEATR3	55027	broad.mit.edu	37	chr16	50134194	50134194	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcaggcattcatagtagTaatgtcggggttagagtgaa	13	4	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	50134194	G	G	50134194	3	3	178	1	0	0	0	0	1	0	0	0	7096	1635	57	5	1703	5	HEATR3	16	50134194	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	27982784	50134194	40220559	301	144414											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53682886	53682886	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagcttaccgactgcataTgctctggccccttaaaattt	7	11	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	53682886	C	C	53682886	3	2	178	1	0	0	0	0	1	0	0	0	13661	1464	51	5	1701	5	RPGRIP1L	16	53682886	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	3548692	53682886	36671867	302	144415											
HSF4	3299	broad.mit.edu	37	chr16	67200263	67200263	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaggtggtgacacttcggCagagccacggtcagcagcac	16	11	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	67200263	G	G	67200263	3	3	178	1	0	0	0	0	1	0	0	0	7465	711	25	4	544	4	HSF4	16	67200263	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	13517377	67200263	23154490	303	144416											
C16orf86	388284	broad.mit.edu	37	chr16	67702010	67702010	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggctggagcgtgagtggCagtccctggactgttccttc	15	10	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	67702010	T	T	67702010	1	4	178	0	1	0	0	0	0	0	0	0	1853	725	25	4		4	C16orf86	16	67702010	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	501747	67702010	22652743	304	144417											
CYB5B	80777	broad.mit.edu	37	chr16	69458867	69458867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttggctgggggcgataagGcgtaagaaagggatcacgac	17	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	69458867	T	T	69458867	1	4	178	0	1	0	0	0	0	0	0	0	4156	1218	42	3		3	CYB5B	16	69458867	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	1756857	69458867	20895886	305	144418											
CLEC18B	497190	broad.mit.edu	37	chr16	74447154	74447154	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctccctggccccttcagctCctgcggccaggccagggagt	12	18	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74447154	A	A	74447154	1	1	178	0	1	0	0	0	0	0	0	0	3535	870	30	3		3	CLEC18B	16	74447154	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	4988287	74447154	15907599	306	144419											
GAN	8139	broad.mit.edu	37	chr16	81387878	81387878	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgctgggttaaaccatAtgaaattgccaatattcgat	7	6	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	81387878	T	T	81387878	1	4	178	0	1	0	0	0	0	0	0	0	6294	464	16	5		5	GAN	16	81387878	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	6940724	81387878	8966875	307	144420											
CDT1	81620	broad.mit.edu	37	chr16	88871952	88871952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctggcggagatgttccGcagcatggacaccatcgtgg	16	10	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	88871952	T	T	88871952	3	4	178	1	0	0	0	0	1	0	0	0	3210	1087	38	3	607	3	CDT1	16	88871952	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	7484074	88871952	1482801	308	144421											
WSCD1	23302	broad.mit.edu	37	chr17	5983834	5983834	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctactggaaacggggcagGaacagtgagtgaccccaggc	14	11	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	5983834	A	A	5983834	1	1	178	0	1	0	0	0	0	0	0	0	17533	1189	41	4		4	WSCD1	17	5983834	5'UTR	SNP	G	TCGA-55-1596-01A-01D-1040-01		5983834	75211376	309	144422											
TP53	7157	broad.mit.edu	37	chr17	7577097	7577097	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttcctctgtgcgccggtCtctcccaggacaggcacaaa	9	16	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577097	A	A	7577097	3	1	178	1	0	0	0	0	1	0	0	0	16505	913	32	3	445	3	TP53	17	7577097	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	1593263	7577097	73618113	310	144423											
MYH8	4626	broad.mit.edu	37	chr17	10297637	10297637	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcgattttcctgcttctctCtgtctgttccagagtggccc	10	13	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	10297637	A	A	10297637	4	1	178	1	0	0	0	0	0	1	0	0	10135	922	32	3	742	3	MYH8	17	10297637	Nonsense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	2720540	10297637	70897573	311	144424											
MYH2	4620	broad.mit.edu	37	chr17	10439778	10439778	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaacaaaaatagaagttcAgaaaaacagacccatgtaaa	6	6	1	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	10439778	G	G	10439778	1	3	178	0	1	0	0	0	0	0	0	0	10129	203	7	5		5	MYH2	17	10439778	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	142141	10439778	70755432	312	144425											
DNAH9	1770	broad.mit.edu	37	chr17	11790355	11790355	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaatgcagctctctgtgaGagcttatccatgtaagatca	9	10	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11790355	T	T	11790355	1	4	178	0	1	0	0	0	0	0	0	0	4648	957	33	3		3	DNAH9	17	11790355	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	1350577	11790355	69404855	313	144426											
TLCD1	116238	broad.mit.edu	37	chr17	27052285	27052285	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgagactagattactgaCaccaggcctataccacatag	8	11	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	27052285	T	T	27052285	1	4	178	0	1	0	0	0	0	0	0	0	16060	493	17	4		4	TLCD1	17	27052285	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	15261930	27052285	54142925	314	144427											
ZNHIT3	9326	broad.mit.edu	37	chr17	34842536	34842536	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtaaacagtctccttccAcaaaaccatggcgtcgctca	7	14	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	34842536	G	G	34842536	1	3	178	0	1	0	0	0	0	0	0	0	18337	174	6	5		5	ZNHIT3	17	34842536	5'UTR	SNP	A	TCGA-55-1596-01A-01D-1040-01	7790251	34842536	46352674	315	144428											
ACACA	31	broad.mit.edu	37	chr17	35583093	35583093	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactaatcttttcctttctcTttaaaaaaacataccacatg	1	11	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	35583093	G	G	35583093	1	3	178	0	1	0	0	0	0	0	0	0	106	1624	56	5		5	ACACA	17	35583093	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	740557	35583093	45612117	316	144429											
SKAP1	8631	broad.mit.edu	37	chr17	46257356	46257356	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttcaaagttattattctTccaccaggtcatgaatttct	4	8	4	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	46257356	C	C	46257356	1	2	178	0	1	0	0	0	0	0	0	0	14468	1798	62	5		5	SKAP1	17	46257356	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	10674263	46257356	34937854	317	144430											
CACNA1G	8913	broad.mit.edu	37	chr17	48667692	48667692	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggggcagggtcctcccCatgggcctgagcatccagca	13	14	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	48667692	A	A	48667692	1	1	178	0	1	0	0	0	0	0	0	0	2570	609	21	2		2	CACNA1G	17	48667692	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	2410336	48667692	32527518	318	144431											
BZRAP1	9256	broad.mit.edu	37	chr17	56393545	56393545	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagtgacctacactccacttCcatgtcctgtcttctctctc	5	16	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	56393545	T	T	56393545	1	4	178	0	1	0	0	0	0	0	0	0	1587	870	30	4		4	BZRAP1	17	56393545	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	7725853	56393545	24801665	319	144432											
TRIM37	4591	broad.mit.edu	37	chr17	57134503	57134503	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattaaggtcactaagtaaTtacctgagaagaaaccttat	6	7	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	57134503	A	A	57134503	1	1	178	0	1	0	0	0	0	0	0	0	16635	1508	52	5		5	TRIM37	17	57134503	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	740958	57134503	24060707	320	144433											
MARCH10	162333	broad.mit.edu	37	chr17	60814179	60814179	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttattctcaatgagccatgActgggctcacttcttcttga	7	11	4	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	60814179	C	C	60814179	3	2	178	1	0	0	0	0	1	0	0	0	9391	272	10	5	1400	5	MARCH10	17	60814179	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	3679676	60814179	20381031	321	144434											
HELZ	9931	broad.mit.edu	37	chr17	65103287	65103287	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataagaagacatttacctCttctaagctagggagcgaag	9	7	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	65103287	T	T	65103287	3	4	178	1	0	0	0	0	1	0	0	0	7116	922	32	4	601	4	HELZ	17	65103287	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	4289108	65103287	16091923	322	144435											
C17orf80	55028	broad.mit.edu	37	chr17	71233218	71233218	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttataagggtcaaaatactaAcattttcagtcatttagttt	5	5	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	71233218	T	T	71233218	1	4	178	0	1	0	0	0	0	0	0	0	1902	58	2	5		5	C17orf80	17	71233218	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	6129931	71233218	9961992	323	144436											
PRPSAP1	5635	broad.mit.edu	37	chr17	74340920	74340920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgggcgcggtggcacatgCctgtaatcctagcactttag	13	12	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74340920	A	A	74340920	1	1	178	0	1	0	0	0	0	0	0	0	12687	754	26	3		3	PRPSAP1	17	74340920	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	3107702	74340920	6854290	324	144437											
PRCD	768206	broad.mit.edu	37	chr17	74527240	74527240	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatctgggggcaaagggaGgaagggggagtgaacgcccg	21	6	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74527240	A	A	74527240	1	1	178	0	1	0	0	0	0	0	0	0	12554	1015	35	4		4	PRCD	17	74527240	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	186320	74527240	6667970	325	144438											
SEPT9	10801	broad.mit.edu	37	chr17	75489176	75489176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtactcgccgcaggcgcCggggctccagacagatggga	16	12	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	75489176	T	T	75489176	1	4	178	0	1	0	0	0	0	0	0	0	14184	667	23	4		4	SEPT9	17	75489176	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	961936	75489176	5706034	326	144439											
TNRC6C	57690	broad.mit.edu	37	chr17	76060902	76060902	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggtggataatggcacagCagcatgggggaagccaccca	14	11	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	76060902	T	T	76060902	3	4	178	1	0	0	0	0	1	0	0	0	16465	710	25	4	2501	4	TNRC6C	17	76060902	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	571726	76060902	5134308	327	144440											
ENGASE	64772	broad.mit.edu	37	chr17	77079716	77079716	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtcctctggcctcagcTgggacaggtgggaggagcct	16	11	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77079716	A	A	77079716	1	1	178	0	1	0	0	0	0	0	0	0	5160	1595	55	5		5	ENGASE	17	77079716	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	1018814	77079716	4115494	328	144441											
CBX2	84733	broad.mit.edu	37	chr17	77755587	77755587	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtcctcctgcagccggcGctccaagctcaaggtgggtg	13	14	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77755587	A	A	77755587	3	1	178	1	0	0	0	0	1	0	0	0	2744	1087	38	4	289	4	CBX2	17	77755587	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	675871	77755587	3439623	329	144442											
NOTUM	147111	broad.mit.edu	37	chr17	79916813	79916814	+	Frame_Shift_Ins	INS	-	A	A													accctgtgcccccttacaccINSatgtttgcgttccaccagta							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	79916814	A	A	79916813	7	5	178	1	0	1	1	0	0	0	0	0	10647	594	21	0	991	0	NOTUM	17	79916813	Frame_Shift_Ins	INS	-	TCGA-55-1596-01A-01D-1040-01	2161226	79916813	1278397	330	144443											
FOXK2	3607	broad.mit.edu	37	chr17	80529850	80529850	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggataggaaggtagaaggGggggttggagcctcccgtgc	19	7	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	80529850	C	C	80529850	1	2	178	0	1	0	0	0	0	0	0	0	6075	1247	43	4		4	FOXK2	17	80529850	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	613037	80529850	665360	331	144444											
APCDD1	147495	broad.mit.edu	37	chr18	10471499	10471499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataccttcaggcttacaaaGgtctcttcttccccttttct	4	14	4	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10471499	T	T	10471499	1	4	178	0	1	0	0	0	0	0	0	0	767	1015	35	2		2	APCDD1	18	10471499	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01		10471499	67605749	332	144445											
SPIRE1	56907	broad.mit.edu	37	chr18	12506572	12506572	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggcaaagggttgtactgCcgctcttggaccttcttaag	12	9	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	12506572	A	A	12506572	2	1	178	1	0	0	0	0	0	0	0	1	15189	726	26	3		3	SPIRE1	18	12506572	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	2035073	12506572	65570676	333	144446											
KLHL14	57565	broad.mit.edu	37	chr18	30349754	30349754	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccggggccgggatgagGgcgaagcggaggcgcttcat	19	10	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30349754	T	T	30349754	2	4	178	1	0	0	0	0	0	0	0	1	8441	1219	43	2		2	KLHL14	18	30349754	Silent	SNP	G	TCGA-55-1596-01A-01D-1040-01	17843182	30349754	47727494	334	144447											
C18orf34	374864	broad.mit.edu	37	chr18	30804833	30804833	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccagtgacatggcacatAttgctctattttttataagc	7	9	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	30804833	G	G	30804833	3	3	178	1	0	0	0	0	1	0	0	0	1920	449	16	5	907	5	C18orf34	18	30804833	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	455079	30804833	47272415	335	144448											
MYO5B	4645	broad.mit.edu	37	chr18	47406710	47406710	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaaagagattaaaaccCcaaataaaactcaagtgctt	7	7	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	47406710	G	G	47406710	1	3	178	0	1	0	0	0	0	0	0	0	10173	638	22	4		4	MYO5B	18	47406710	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	16601877	47406710	30670538	336	144449											
DCC	1630	broad.mit.edu	37	chr18	50278670	50278670	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acaccacaagccagatgaggGactttaccaatgtgaggcat	10	10	0	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	50278670	C	C	50278670	3	2	178	1	0	0	0	0	1	0	0	0	4315	1174	41	4	344	4	DCC	18	50278670	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	2871960	50278670	27798578	337	144450											
SERPINB13	5275	broad.mit.edu	37	chr18	61262141	61262141	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagatagtggatgctcattcTgagactctgatattgggttt	11	5	3	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61262141	A	A	61262141	1	1	178	0	1	0	0	0	0	0	0	0	14213	1595	55	5		5	SERPINB13	18	61262141	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	10983471	61262141	16815107	338	144451											
CD226	10666	broad.mit.edu	37	chr18	67531445	67531445	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagtaactcaattcagaCaactagtatctaaggtagac	6	8	4	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	67531445	A	A	67531445	1	1	178	0	1	0	0	0	0	0	0	0	3016	493	17	3		3	CD226	18	67531445	3'UTR	SNP	C	TCGA-55-1596-01A-01D-1040-01	6269304	67531445	10545803	339	144452											
STK11	6794	broad.mit.edu	37	chr19	1220629	1220629	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgccggaccagccagggctCcccggctttccagccgcccg	12	20	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220629	T	T	1220629	3	4	178	1	0	0	0	0	1	0	0	0	15405	855	30	4	665	4	STK11	19	1220629	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01		1220629	57908354	340	144453											
STK11	6794	broad.mit.edu	37	chr19	1220706	1220706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggacatctggtcggctGgggtcaccctgtaagtgccc	15	11	2	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220706	T	T	1220706	3	4	178	1	0	0	0	0	1	0	0	0	15405	1348	47	2	742	2	STK11	19	1220706	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	77	1220706	57908277	341	144454											
FBN3	84467	broad.mit.edu	37	chr19	8160759	8160759	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaataatcggggactttctGggcatctttctgtggccaat	10	8	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	8160759	T	T	8160759	1	4	178	0	1	0	0	0	0	0	0	0	5761	1363	47	2		2	FBN3	19	8160759	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	6940053	8160759	50968224	342	144455											
SMARCA4	6597	broad.mit.edu	37	chr19	11135100	11135100	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgctgctgactgatggctccGagaaggacaagaaggtgggc	16	8	0	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	11135100	C	C	11135100	3	2	178	1	0	0	0	0	1	0	0	0	14884	1059	37	4	3145	4	SMARCA4	19	11135100	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	2974341	11135100	47993883	343	144456											
MAN2B1	4125	broad.mit.edu	37	chr19	12761005	12761005	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgggaacaccaagctgagAagttctggtgcacctcctgc	11	13	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	12761005	C	C	12761005	3	2	178	1	0	0	0	0	1	0	0	0	9308	246	9	5	989	5	MAN2B1	19	12761005	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	1625905	12761005	46367978	344	144457											
AKAP8L	26993	broad.mit.edu	37	chr19	15511732	15511732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagaggcagggggcagcCgcccagtaccacctagtggg	15	14	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	15511732	A	A	15511732	1	1	178	0	1	0	0	0	0	0	0	0	458	667	23	1		1	AKAP8L	19	15511732	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	2750727	15511732	43617251	345	144458											
UNC13A	23025	broad.mit.edu	37	chr19	17746954	17746954	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgttcctctgggagaacttCccccttcttggcctgaaatg	9	13	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	17746954	T	T	17746954	3	4	178	1	0	0	0	0	1	0	0	0	17110	864	30	4	2089	4	UNC13A	19	17746954	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	2235222	17746954	41382029	346	144459											
RHPN2	85415	broad.mit.edu	37	chr19	33493529	33493529	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtttttaggttaagctgcaGatggaatcagtgatctgtat	12	4	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	33493529	C	C	33493529	1	2	178	0	1	0	0	0	0	0	0	0	13460	957	33	4		4	RHPN2	19	33493529	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	15746575	33493529	25635454	347	144460											
DLL3	10683	broad.mit.edu	37	chr19	39991296	39991296	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaacctggagagaggagttAggagaccagattggaggtga	17	4	0	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	39991296	T	T	39991296	3	4	178	1	0	0	0	0	1	0	0	0	4607	417	15	5	403	5	DLL3	19	39991296	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	6497767	39991296	19137687	348	144461											
FCGBP	8857	broad.mit.edu	37	chr19	40363394	40363394	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccctcagtcccattaacGtcaggtcatgtttcccttaa	5	14	4	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	40363394	A	A	40363394	1	1	178	0	1	0	0	0	0	0	0	0	5835	1160	40	4		4	FCGBP	19	40363394	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	372098	40363394	18765589	349	144462											
PHLDB3	653583	broad.mit.edu	37	chr19	44006275	44006275	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatcctcagctccttcctcTggcgctgtagctccttcact	7	17	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44006275	A	A	44006275	3	1	178	1	0	0	0	0	1	0	0	0	11948	1580	55	5	1604	5	PHLDB3	19	44006275	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	3642881	44006275	15122708	350	144463											
LAIR1	3903	broad.mit.edu	37	chr19	54872443	54872443	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggccacagaggacagcaGctgggacagggtccagggac	17	10	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	54872443	C	C	54872443	1	2	178	0	1	0	0	0	0	0	0	0	8674	986	34	4		4	LAIR1	19	54872443	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	10866168	54872443	4256540	351	144464											
KIR3DL1	3811	broad.mit.edu	37	chr19	55328122	55328122	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagtggagatctgggccTggagtggagatctgggcctg	18	7	2	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	55328122	C	C	55328122	1	2	178	0	1	0	0	0	0	0	0	0	8391	1595	55	5		5	KIR3DL1	19	55328122	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	455679	55328122	3800861	352	144465											
PEG3	5178	broad.mit.edu	37	chr19	57327504	57327504	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcatatgattttgcctcaTagacattttccttagtggga	7	8	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	57327504	C	C	57327504	3	2	178	1	0	0	0	0	1	0	0	0	11814	1406	49	5	2464	5	PEG3	19	57327504	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	1999382	57327504	1801479	353	144466											
ZNF530	348327	broad.mit.edu	37	chr19	58111475	58111475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctccgcccagagtccgatGgcggcggcactgagggcccc	15	17	0	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	58111475	T	T	58111475	3	4	178	1	0	0	0	0	1	0	0	0	18098	1348	47	2	5	2	ZNF530	19	58111475	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	783971	58111475	1017508	354	144467											
RSPO4	343637	broad.mit.edu	37	chr20	947922	947922	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgcaccggatgcagaagtCctggctgaagcagctctcac	11	13	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	947922	T	T	947922	3	4	178	1	0	0	0	0	1	0	0	0	13823	855	30	4	412	4	RSPO4	20	947922	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01		947922	62077598	355	144468											
VPS16	64601	broad.mit.edu	37	chr20	2846784	2846784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggacgatgtatgcattgcGcctctgctcgtaagagagag	13	8	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	2846784	T	T	2846784	1	4	178	0	1	0	0	0	0	0	0	0	17320	1102	38	3		3	VPS16	20	2846784	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	1898862	2846784	60178736	356	144469											
PLCB1	23236	broad.mit.edu	37	chr20	8731494	8731495	+	Intron	DNP	CG	TC	TC													tatgagactcacccgtaataCgctggaaaaactgatggcct					rs78979354	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TC	8731495	TC	TC	8731494	1	4	178	0	1	0	0	0	0	0	0	0	12122	551	19	4		4	PLCB1	20	8731494	Intron	DNP	CG	TCGA-55-1596-01A-01D-1040-01	5884710	8731494	54294026	357	144470											
C20orf94	128710	broad.mit.edu	37	chr20	10603806	10603806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtcagggttttgccaGcttcagagttgtcagatcca	11	9	3	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10603806	T	T	10603806	3	4	178	1	0	0	0	0	1	0	0	0	2143	971	34	3	1032	3	C20orf94	20	10603806	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1872312	10603806	52421714	358	144471											
PCSK2	5126	broad.mit.edu	37	chr20	17434237	17434237	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcccacaatgccctgccAgaaggatatggtgtccaacc	9	13	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	17434237	T	T	17434237	1	4	178	0	1	0	0	0	0	0	0	0	11695	203	7	5		5	PCSK2	20	17434237	Intron	SNP	A	TCGA-55-1596-01A-01D-1040-01	6830431	17434237	45591283	359	144472											
SEC23B	10483	broad.mit.edu	37	chr20	18523047	18523047	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccaccatcgcccgaaaGtaagcagccccagtttcctt	8	15	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18523047	A	A	18523047	5	1	178	1	0	0	0	0	0	0	1	0	14105	1043	36	4	1558	4	SEC23B	20	18523047	Splice_Site	SNP	G	TCGA-55-1596-01A-01D-1040-01	1088810	18523047	44502473	360	144473											
NINL	22981	broad.mit.edu	37	chr20	25459484	25459484	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagcaattctgagttgttTcctaagtctaatttcaaatt	5	8	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	25459484	C	C	25459484	1	2	178	0	1	0	0	0	0	0	0	0	10515	1798	62	5		5	NINL	20	25459484	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	6936437	25459484	37566036	361	144474											
PTPRT	11122	broad.mit.edu	37	chr20	40980917	40980917	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcgagccgacagccttGtagttgatctgtaggacaag	12	10	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	40980917	T	T	40980917	4	4	178	1	0	0	0	0	0	1	0	0	12920	1372	48	3	2905	3	PTPRT	20	40980917	Nonsense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	15521433	40980917	22044603	362	144475											
ELMO2	63916	broad.mit.edu	37	chr20	45011971	45011971	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaaattgctggatttgTgctctctgcatagcaaagag	12	6	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	45011971	A	A	45011971	1	1	178	0	1	0	0	0	0	0	0	0	5108	1711	59	5		5	ELMO2	20	45011971	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	4031054	45011971	18013549	363	144476											
ZNF831	128611	broad.mit.edu	37	chr20	57829576	57829576	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggaaatgactgtcccCtgcccctctttaggaagtga	12	10	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	57829576	T	T	57829576	2	4	178	1	0	0	0	0	0	0	0	1	18314	668	24	4		4	ZNF831	20	57829576	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	12817605	57829576	5195944	364	144477											
PRPF6	24148	broad.mit.edu	37	chr20	62630480	62630480	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttccatgatcccgacacacgGaggagacatcaagtgagtgc	11	11	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	62630480	C	C	62630480	3	2	178	1	0	0	0	0	1	0	0	0	12680	1174	41	4	880	4	PRPF6	20	62630480	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	4800904	62630480	395040	365	144478											
BAGE2	85319	broad.mit.edu	37	chr21	11038767	11038767	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagaaaattttctcttAgtaatagctggtttacccat	7	8	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	11038767	C	C	11038767	1	2	178	0	1	0	0	0	0	0	0	0	1297	435	15	5		5	BAGE2	21	11038767	3'UTR	SNP	A	TCGA-55-1596-01A-01D-1040-01		11038767	37091128	366	144479											
LIPI	149998	broad.mit.edu	37	chr21	15561369	15561369	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttaccaaaagatttttaaTgtgcacactcaaactcacag	4	10	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	15561369	C	C	15561369	3	2	178	1	0	0	0	0	1	0	0	0	8898	1464	51	5	1000	5	LIPI	21	15561369	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01	4522602	15561369	32568526	367	144480											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212371	28212371	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacattccccagcttccatGaaaaggcgtctaaatggaga	8	12	1	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	28212371	T	T	28212371	3	4	178	1	0	0	0	0	1	0	0	0	255	1290	45	3	1244	3	ADAMTS1	21	28212371	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	12651002	28212371	19917524	368	144481											
KRTAP13-1	140258	broad.mit.edu	37	chr21	31768627	31768627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctatgtggagtccagcCcctgccagacctcctgctac	8	17	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768627	A	A	31768627	3	1	178	1	0	0	0	0	1	0	0	0	8593	623	22	2	225	2	KRTAP13-1	21	31768627	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	3556256	31768627	16361268	369	144482											
CBS	875	broad.mit.edu	37	chr21	44479546	44479546	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacccccaagtgctggctGgaagccccagggggaagcct	15	13	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44479546	A	A	44479546	1	1	178	0	1	0	0	0	0	0	0	0	2737	1363	47	4		4	CBS	21	44479546	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	12710919	44479546	3650349	370	144483											
GAB4	128954	broad.mit.edu	37	chr22	17450471	17450471	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccggtgccacctcccctctCcctctgggtctcagtgaggg	11	18	3	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17450471	A	A	17450471	1	1	178	0	1	0	0	0	0	0	0	0	6211	870	30	3		3	GAB4	22	17450471	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01		17450471	33854095	371	144484											
CECR1	51816	broad.mit.edu	37	chr22	17680398	17680398	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctatgcactcccacaccaaGacagttgtcaggatttgccc	7	15	1	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	17680398	C	C	17680398	1	2	178	0	1	0	0	0	0	0	0	0	3235	957	33	4		4	CECR1	22	17680398	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	229927	17680398	33624168	372	144485											
DGCR14	8220	broad.mit.edu	37	chr22	19124931	19124931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccccaggtcatcatcgGggactcgttcacacctgcag	9	17	3	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	19124931	A	A	19124931	3	1	178	1	0	0	0	0	1	0	0	0	4500	1232	43	4	502	4	DGCR14	22	19124931	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	1444533	19124931	32179635	373	144486											
CYTH4	27128	broad.mit.edu	37	chr22	37708205	37708205	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaacgtgaccagtggatcGagtccatccggtaaggggtg	16	8	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37708205	T	T	37708205	4	4	178	1	0	0	0	0	0	1	0	0	4239	1059	37	3	1148	3	CYTH4	22	37708205	Nonsense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	18583274	37708205	13596361	374	144487											
RPS19BP1	91582	broad.mit.edu	37	chr22	39928598	39928598	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccatgccactggggctaaGcccggcctggattgttttcc	11	14	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39928598	A	A	39928598	1	1	178	0	1	0	0	0	0	0	0	0	13741	986	34	4		4	RPS19BP1	22	39928598	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	2220393	39928598	11375968	375	144488											
ST13	6767	broad.mit.edu	37	chr22	41246783	41246783	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacaacccctaagaaatctTatagtactttatcacaaaac	2	10	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	41246783	G	G	41246783	1	3	178	0	1	0	0	0	0	0	0	0	15328	1769	61	5		5	ST13	22	41246783	Intron	SNP	T	TCGA-55-1596-01A-01D-1040-01	1318185	41246783	10057783	376	144489											
MCAT	27349	broad.mit.edu	37	chr22	43537083	43537083	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccttcccatcacctgagtgGgtccagtatcatttttggca	8	13	2	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	43537083	C	C	43537083	1	2	178	0	1	0	0	0	0	0	0	0	9465	1247	43	4		4	MCAT	22	43537083	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	2290300	43537083	7767483	377	144490											
WNT7B	7477	broad.mit.edu	37	chr22	46345933	46345933	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacaatgatggcatcgggCcgactctggcagatggcacg	13	11	2	2			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46345933	A	A	46345933	2	1	178	1	0	0	0	0	0	0	0	1	17522	726	26	3		3	WNT7B	22	46345933	Silent	SNP	C	TCGA-55-1596-01A-01D-1040-01	2808850	46345933	4958633	378	144491											
MAGEB10	139422	broad.mit.edu	37	chrX	27839787	27839787	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taattatattggtgcattacTtgctgtacaagtaccaaatg	7	6	0	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	27839787	A	A	27839787	3	1	178	1	0	0	0	0	1	0	0	0	9265	1606	56	5	366	5	MAGEB10	23	27839787	Missense_Mutation	SNP	T	TCGA-55-1596-01A-01D-1040-01		27839787	127430773	379	144492											
DGKK	139189	broad.mit.edu	37	chrX	50213554	50213554	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcggagagcagcggcggagCcggcggcggagccggtggtg	22	11	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	50213554	G	G	50213554	3	3	178	1	0	0	0	0	1	0	0	0	4512	739	26	4	3802	4	DGKK	23	50213554	Missense_Mutation	SNP	C	TCGA-55-1596-01A-01D-1040-01	22373767	50213554	105057006	380	144493											
BMP15	9210	broad.mit.edu	37	chrX	50659489	50659489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaccagagtgtcccccGgccctcctgtgtcccgtata	12	15	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	50659489	T	T	50659489	3	4	178	1	0	0	0	0	1	0	0	0	1464	1116	39	1	1067	1	BMP15	23	50659489	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	445935	50659489	104611071	381	144494											
RAB41	347517	broad.mit.edu	37	chrX	69504378	69504378	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcctagaagctgaccttGggtgttaagatttgactcca	9	9	1	4			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	69504378	A	A	69504378	1	1	178	0	1	0	0	0	0	0	0	0	13051	1363	47	4		4	RAB41	23	69504378	Intron	SNP	G	TCGA-55-1596-01A-01D-1040-01	18844889	69504378	85766182	382	144495											
DIAPH2	1730	broad.mit.edu	37	chrX	96330222	96330222	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acataagaaacgttattctgGaggttaatgaagacatgctg	10	5	1	3			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	96330222	C	C	96330222	3	2	178	1	0	0	0	0	1	0	0	0	4559	1175	41	4	2283	4	DIAPH2	23	96330222	Missense_Mutation	SNP	G	TCGA-55-1596-01A-01D-1040-01	26825844	96330222	58940338	383	144496											
AFF2	2334	broad.mit.edu	37	chrX	148035048	148035048	+	Intron	DEL	G	-	-													acaggcccttcacctgaactGggctgttttccatcttattt							TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	148035048	-	-	148035048	6	5	178	0	1	1	0	1	0	0	0	0	357	1363	47	0		0	AFF2	23	148035048	Intron	DEL	G	TCGA-55-1596-01A-01D-1040-01	51704826	148035048	7235512	384	144497											
GABRA3	2556	broad.mit.edu	37	chrX	151337133	151337133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcagggaggaggagcCatgagggaagttaaggcaca	18	6	0	1			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	151337133	A	A	151337133	1	1	178	0	1	0	0	0	0	0	0	0	6222	609	21	2		2	GABRA3	23	151337133	Intron	SNP	C	TCGA-55-1596-01A-01D-1040-01	3302085	151337133	3933427	385	144498											
GABRQ	55879	broad.mit.edu	37	chrX	151821395	151821395	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccatggccccagtgggaAgcccatgcttcaccatggcg	13	14	1	0			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	151821395	T	T	151821395	3	4	178	1	0	0	0	0	1	0	0	0	6235	72	3	5	1584	5	GABRQ	23	151821395	Missense_Mutation	SNP	A	TCGA-55-1596-01A-01D-1040-01	484262	151821395	3449165	386	144499											
KIAA1751	85452	broad.mit.edu	37	chr1	1890437	1890437	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggctcagcccctggtgaaGattggagcttccacctggtc	14	12	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1890437	T	T	1890437	1	4	179	0	1	0	0	0	0	0	0	0	8326	957	33	3		3	KIAA1751	1	1890437	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08		1890437	247360184	1	144500											
PRKCZ	5590	broad.mit.edu	37	chr1	2077475	2077475	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctccggcaggattctgtcAtgccttcccaagagcctcca	8	16	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2077475	G	G	2077475	3	3	179	1	0	0	0	0	1	0	0	0	12623	217	8	5	588	5	PRKCZ	1	2077475	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	187038	2077475	247173146	2	144501											
MMEL1	79258	broad.mit.edu	37	chr1	2530196	2530196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgattttgacagaggataGcacagtttgtatgaacagag	11	5	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2530196	T	T	2530196	3	4	179	1	0	0	0	0	1	0	0	0	9739	962	34	3	1316	3	MMEL1	1	2530196	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	452721	2530196	246720425	3	144502											
MMEL1	79258	broad.mit.edu	37	chr1	2538455	2538455	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcgccaccggccagcctcCcaccacctccaagatgtcca	6	21	0	1	rs148947796		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2538455	T	T	2538455	3	4	179	1	0	0	0	0	1	0	0	0	9739	632	22	4	1822	4	MMEL1	1	2538455	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	8259	2538455	246712166	4	144503											
PRDM16	63976	broad.mit.edu	37	chr1	3103017	3103017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccccgggcggcggcaaaGgagacagacttcggatggga	18	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3103017	T	T	3103017	3	4	179	1	0	0	0	0	1	0	0	0	12563	991	35	2	372	2	PRDM16	1	3103017	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	564562	3103017	246147604	5	144504											
MEGF6	1953	broad.mit.edu	37	chr1	3519121	3519121	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgcacgcacggctggcGgcggcccaccagggtcagct	16	16	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3519121	A	A	3519121	3	1	179	1	0	0	0	0	1	0	0	0	9555	1116	39	4	4594	4	MEGF6	1	3519121	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	416104	3519121	245731500	6	144505											
KIAA0562	9731	broad.mit.edu	37	chr1	3747510	3747510	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttctgaaatcactgcctCagtcattccttcaacaaatg	4	11	5	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3747510	G	G	3747510	1	3	179	0	1	0	0	0	0	0	0	0	8254	841	29	4		4	KIAA0562	1	3747510	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	228389	3747510	245503111	7	144506											
RNF207	388591	broad.mit.edu	37	chr1	6266722	6266722	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtcttctggactgtttccacGacttctgtgccggctgcctg	11	13	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6266722	C	C	6266722	3	2	179	1	0	0	0	0	1	0	0	0	13585	1058	37	4	129	4	RNF207	1	6266722	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2519212	6266722	242983899	8	144507											
CASZ1	54897	broad.mit.edu	37	chr1	10714191	10714191	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttcttgaagccgtccttGgcgtaggcatcgtccttgat	10	11	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10714191	A	A	10714191	2	1	179	1	0	0	0	0	0	0	0	1	2711	1335	47	4		4	CASZ1	1	10714191	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	4447469	10714191	238536430	9	144508											
PTCHD2	57540	broad.mit.edu	37	chr1	11562989	11562989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcctgtgtgtgcatgcCcatttttgatttccaattgc	8	10	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11562989	T	T	11562989	1	4	179	0	1	0	0	0	0	0	0	0	12839	638	22	4		4	PTCHD2	1	11562989	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	848798	11562989	237687632	10	144509											
AADACL4	343066	broad.mit.edu	37	chr1	12726347	12726347	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacggcacttgtgtacccccAgacgtctggaggaagtacga	12	11	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12726347	G	G	12726347	2	3	179	1	0	0	0	0	0	0	0	1	13	175	7	5		5	AADACL4	1	12726347	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	1163358	12726347	236524274	11	144510											
FBLIM1	54751	broad.mit.edu	37	chr1	16091649	16091649	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacccgaggctggcttggcGgggaggcccagcccctggac	16	15	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16091649	A	A	16091649	2	1	179	1	0	0	0	0	0	0	0	1	5754	1103	39	4		4	FBLIM1	1	16091649	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	3365302	16091649	233158972	12	144511											
PADI1	29943	broad.mit.edu	37	chr1	17567297	17567297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctggggggtctgcgggGctctgagaagaagcactccc	16	12	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17567297	T	T	17567297	1	4	179	0	1	0	0	0	0	0	0	0	11471	1218	42	3		3	PADI1	1	17567297	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1475648	17567297	231683324	13	144512											
CELA3B	23436	broad.mit.edu	37	chr1	22303732	22303732	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgactgtgggggctttcagcTtatgatggagcaggagagtg	17	5	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22303732	A	A	22303732	1	1	179	0	1	0	0	0	0	0	0	0	3244	1624	56	5		5	CELA3B	1	22303732	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	4736435	22303732	226946889	14	144513											
ARID1A	8289	broad.mit.edu	37	chr1	27092956	27092957	+	Frame_Shift_Ins	INS	-	C	C													ctcttttacagggatggcagINSccagcccagagatgatgggc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27092957	C	C	27092956	7	5	179	1	0	1	1	0	0	0	0	0	915	971	34	0	2925	0	ARID1A	1	27092956	Frame_Shift_Ins	INS	-	TCGA-55-5899-01A-11D-1625-08	4789224	27092956	222157665	15	144514											
PTPRU	10076	broad.mit.edu	37	chr1	29618377	29618378	+	Intron	DNP	CC	TT	TT													tctcccctcaacccccctctCcaggaagccggtgaacatga							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	29618378	TT	TT	29618377	1	4	179	0	1	0	0	0	0	0	0	0	12921	870	30	4		4	PTPRU	1	29618377	Intron	DNP	CC	TCGA-55-5899-01A-11D-1625-08	2525421	29618377	219632244	16	144515											
PUM1	9698	broad.mit.edu	37	chr1	31468199	31468202	+	Intron	DEL	TAAT	-	-													ccctttcacacattacaatcTaattaacaaacaacacagag							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31468202	-	-	31468199	6	5	179	0	1	1	0	1	0	0	0	0	12933	1537	53	0		0	PUM1	1	31468199	Intron	DEL	TAAT	TCGA-55-5899-01A-11D-1625-08	1849822	31468199	217782422	17	144516											
RNF19B	127544	broad.mit.edu	37	chr1	33402945	33402945	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcatgggttcaggattaGgaatttcaaaaagataggtg	12	3	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33402945	A	A	33402945	1	1	179	0	1	0	0	0	0	0	0	0	13582	1015	35	4		4	RNF19B	1	33402945	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1934746	33402945	215847676	18	144517											
CSMD2	114784	broad.mit.edu	37	chr1	33992711	33992711	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcctctaggcactcagcAactctcagcaacacgagttt	6	15	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33992711	C	C	33992711	1	2	179	0	1	0	0	0	0	0	0	0	3979	145	5	5		5	CSMD2	1	33992711	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	589766	33992711	215257910	19	144518											
CDCA8	55143	broad.mit.edu	37	chr1	38168930	38168930	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcttacctgtaggtcaagCcgtgctaacactgttacccc	7	13	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38168930	T	T	38168930	2	4	179	1	0	0	0	0	0	0	0	1	3122	738	26	4		4	CDCA8	1	38168930	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	4176219	38168930	211081691	20	144519											
HIVEP3	59269	broad.mit.edu	37	chr1	42046279	42046279	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtaatgtcacaggcactCtcaggtatggagttgggaaa	13	7	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42046279	G	G	42046279	3	3	179	1	0	0	0	0	1	0	0	0	7255	913	32	4	3054	4	HIVEP3	1	42046279	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3877349	42046279	207204342	21	144520											
PTPRF	5792	broad.mit.edu	37	chr1	44064616	44064616	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtggtggggtggcaggGtgagcacagaccagcatgca	20	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44064616	A	A	44064616	1	1	179	0	1	0	0	0	0	0	0	0	12909	1276	44	4		4	PTPRF	1	44064616	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2018337	44064616	205186005	22	144521											
TESK2	10420	broad.mit.edu	37	chr1	45923457	45923457	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attccgtttgctccgatccaTagtctaaataatcacttttt	4	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45923457	C	C	45923457	3	2	179	1	0	0	0	0	1	0	0	0	15890	1406	49	5	1754	5	TESK2	1	45923457	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	1858841	45923457	203327164	23	144522											
MKNK1	8569	broad.mit.edu	37	chr1	47024441	47024441	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggcgatggcctcagctgCgaagagcgtcaggtccattg	15	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47024441	G	G	47024441	3	3	179	1	0	0	0	0	1	0	0	0	9697	768	27	4	197	4	MKNK1	1	47024441	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1100984	47024441	202226180	24	144523											
MAGOH	4116	broad.mit.edu	37	chr1	53694647	53694647	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctagaaacattttagaaaatCgaagtcaagtagaattggat	8	4	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53694647	G	G	53694647	1	3	179	0	1	0	0	0	0	0	0	0	9286	899	31	4		4	MAGOH	1	53694647	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	6670206	53694647	195555974	25	144524											
SGIP1	84251	broad.mit.edu	37	chr1	67147825	67147825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacaggccccccagggcCtcctgggcctcctcgcaatg	10	20	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67147825	A	A	67147825	3	1	179	1	0	0	0	0	1	0	0	0	14319	681	24	2	1146	2	SGIP1	1	67147825	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	13453178	67147825	182102796	26	144525											
SGIP1	84251	broad.mit.edu	37	chr1	67185020	67185020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaccatgggagctcaggaCactctccctgttgcagcagc	10	14	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67185020	A	A	67185020	3	1	179	1	0	0	0	0	1	0	0	0	14319	477	17	3	1748	3	SGIP1	1	67185020	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	37195	67185020	182065601	27	144526											
COL24A1	255631	broad.mit.edu	37	chr1	86524848	86524848	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaatattaccagcaaatcCtggaattccctgaaataata	4	10	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86524848	T	T	86524848	3	4	179	1	0	0	0	0	1	0	0	0	3715	690	24	4	3590	4	COL24A1	1	86524848	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	19339828	86524848	162725773	28	144527											
HFM1	164045	broad.mit.edu	37	chr1	91817069	91817069	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaataaaataagctatattAgcattagtatctttttggaa	6	3	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91817069	G	G	91817069	1	3	179	0	1	0	0	0	0	0	0	0	7150	435	15	5		5	HFM1	1	91817069	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	5292221	91817069	157433552	29	144528											
BRDT	676	broad.mit.edu	37	chr1	92442839	92442839	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttaaagaaatgcttgcaaaGaaacatttttcatatgcatg	6	6	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92442839	T	T	92442839	3	4	179	1	0	0	0	0	1	0	0	0	1517	933	33	3	876	3	BRDT	1	92442839	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	625770	92442839	156807782	30	144529											
PTBP2	58155	broad.mit.edu	37	chr1	97236293	97236293	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactagcaaccgaggaagcAgctattactatggttaatta	9	7	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97236293	G	G	97236293	2	3	179	1	0	0	0	0	0	0	0	1	12832	175	7	5		5	PTBP2	1	97236293	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	4793454	97236293	152014328	31	144530											
EXTL2	2135	broad.mit.edu	37	chr1	101340074	101340074	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatttattacagagagaatGaaactgatttgtcaactctt	7	5	2	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101340074	A	A	101340074	1	1	179	0	1	0	0	0	0	0	0	0	5369	1305	45	4		4	EXTL2	1	101340074	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4103781	101340074	147910547	32	144531											
COL11A1	1301	broad.mit.edu	37	chr1	103355923	103355923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattgtttgaaattttcttTtgaatgattttaatctgcaa	5	3	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103355923	C	C	103355923	1	2	179	0	1	0	0	0	0	0	0	0	3699	1856	64	5		5	COL11A1	1	103355923	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2015849	103355923	145894698	33	144532											
NTNG1	22854	broad.mit.edu	37	chr1	107691419	107691420	+	Missense_Mutation	DNP	GG	TT	TT													aaagtgaaactcgatcctccGgatattacctgtggagaccc					rs147345058	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	107691420	TT	TT	107691419	3	4	179	1	0	0	0	0	1	0	0	0	10799	1103	39	1	206	1	NTNG1	1	107691419	Missense_Mutation	DNP	GG	TCGA-55-5899-01A-11D-1625-08	4335496	107691419	141559202	34	144533											
C1orf59	113802	broad.mit.edu	37	chr1	109200156	109200156	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtttaaactgaattgccgTctccctgggaacttcttcaa	8	10	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109200156	C	C	109200156	3	2	179	1	0	0	0	0	1	0	0	0	2073	1667	58	5	1138	5	C1orf59	1	109200156	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	1508737	109200156	140050465	35	144534											
STXBP3	6814	broad.mit.edu	37	chr1	109340940	109340940	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgtagtttatgtcagtctGagtatatgtattgggcagga	12	3	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109340940	T	T	109340940	1	4	179	0	1	0	0	0	0	0	0	0	15472	1305	45	3		3	STXBP3	1	109340940	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	140784	109340940	139909681	36	144535											
KCNC4	3749	broad.mit.edu	37	chr1	110765692	110765692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacgtgacagagatcctccGcgtagggaacatcaccagcg	11	13	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110765692	T	T	110765692	3	4	179	1	0	0	0	0	1	0	0	0	8087	1087	38	3	791	3	KCNC4	1	110765692	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1424752	110765692	138484929	37	144536											
DCLRE1B	64858	broad.mit.edu	37	chr1	114454829	114454829	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgaagacaggagagtacaGaatgacaacattgagcccac	11	9	0	6			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114454829	A	A	114454829	1	1	179	0	1	0	0	0	0	0	0	0	4328	957	33	4		4	DCLRE1B	1	114454829	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	3689137	114454829	134795792	38	144537											
SPAG17	200162	broad.mit.edu	37	chr1	118509152	118509152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattaataaagtagagatGcattttgacttccatgtttt	7	4	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118509152	T	T	118509152	1	4	179	0	1	0	0	0	0	0	0	0	15095	1334	46	3		3	SPAG17	1	118509152	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4054323	118509152	130741469	39	144538											
PDE4DIP	9659	broad.mit.edu	37	chr1	144865993	144865993	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttcccattcgttatctctCaaagatactgccccaaccca	4	15	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144865993	G	G	144865993	1	3	179	0	1	0	0	0	0	0	0	0	11737	841	29	4		4	PDE4DIP	1	144865993	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	26356841	144865993	104384628	40	144539											
SEC22B	9554	broad.mit.edu	37	chr1	145116003	145116003	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtggaacttctgcctctAaagaccttgcaagaaaagag	9	9	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145116003	G	G	145116003	1	3	179	0	1	0	0	0	0	0	0	0	14102	377	13	5		5	SEC22B	1	145116003	3'UTR	SNP	A	TCGA-55-5899-01A-11D-1625-08	250010	145116003	104134618	41	144540											
GJA5	2702	broad.mit.edu	37	chr1	147231223	147231223	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcatccccccaggaagactCagcagctgtgcccagcacga	9	17	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147231223	G	G	147231223	3	3	179	1	0	0	0	0	1	0	0	0	6468	835	29	4	956	4	GJA5	1	147231223	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2115220	147231223	102019398	42	144541											
FLG	2312	broad.mit.edu	37	chr1	152276642	152276642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgtggggtgtctggagcCatctcttgactgctcctgag	15	10	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152276642	A	A	152276642	3	1	179	1	0	0	0	0	1	0	0	0	5979	594	21	2	1469	2	FLG	1	152276642	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	5045419	152276642	96973979	43	144542											
FLG	2312	broad.mit.edu	37	chr1	152284648	152284648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccctgagtgcctggagCcgtctcttgattgttcctca	11	12	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152284648	A	A	152284648	3	1	179	1	0	0	0	0	1	0	0	0	5979	739	26	3	9475	3	FLG	1	152284648	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	8006	152284648	96965973	44	144543											
FLG	2312	broad.mit.edu	37	chr1	152284712	152284712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggatcctgactgcccacGggaggcatcagaccttccct	10	15	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152284712	T	T	152284712	3	4	179	1	0	0	0	0	1	0	0	0	5979	1116	39	1	9539	1	FLG	1	152284712	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	64	152284712	96965909	45	144544											
FLG2	388698	broad.mit.edu	37	chr1	152331282	152331282	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttcacccttgctcagtgTgccacactccccatcttgct	6	16	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152331282	G	G	152331282	3	3	179	1	0	0	0	0	1	0	0	0	5980	1696	59	5	7104	5	FLG2	1	152331282	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	46570	152331282	96919339	46	144545											
NUP210L	91181	broad.mit.edu	37	chr1	154027277	154027277	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattggaatcagtgtcattTtctctggaagaagtctgaat	9	6	5	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154027277	C	C	154027277	3	2	179	1	0	0	0	0	1	0	0	0	10856	1841	64	5	2462	5	NUP210L	1	154027277	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	1695995	154027277	95223344	47	144546											
ATP8B2	57198	broad.mit.edu	37	chr1	154313263	154313263	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcggagggcctgcagcgaAggcccatgtgggtggggcac	20	10	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154313263	C	C	154313263	1	2	179	0	1	0	0	0	0	0	0	0	1199	87	3	5		5	ATP8B2	1	154313263	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	285986	154313263	94937358	48	144547											
YY1AP1	55249	broad.mit.edu	37	chr1	155642500	155642500	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaagggcgatggagcttTgagcaaaggttcccagctct	15	8	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155642500	C	C	155642500	3	2	179	1	0	0	0	0	1	0	0	0	17635	1812	63	5	1838	5	YY1AP1	1	155642500	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	1329237	155642500	93608121	49	144548											
INSRR	3645	broad.mit.edu	37	chr1	156811945	156811945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggacaccatgcagttgCgggctgctagatctcggtgc	14	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156811945	A	A	156811945	3	1	179	1	0	0	0	0	1	0	0	0	7844	768	27	3	552	3	INSRR	1	156811945	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1169445	156811945	92438676	50	144549											
ARHGEF11	9826	broad.mit.edu	37	chr1	156914132	156914132	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggttcctgctcagtccCagtcccctggcacataccca	7	17	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156914132	A	A	156914132	1	1	179	0	1	0	0	0	0	0	0	0	898	609	21	2		2	ARHGEF11	1	156914132	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	102187	156914132	92336489	51	144550											
ETV3	2117	broad.mit.edu	37	chr1	157104092	157104092	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacacttaggtagccactGagaccaacaattcttgctct	6	11	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157104092	C	C	157104092	1	2	179	0	1	0	0	0	0	0	0	0	5321	1305	45	4		4	ETV3	1	157104092	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	189960	157104092	92146529	52	144551											
FCRL3	115352	broad.mit.edu	37	chr1	157666159	157666159	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaaggtcctgatggcagGgacatcaaggtcaaggggaa	16	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157666159	T	T	157666159	1	4	179	0	1	0	0	0	0	0	0	0	5853	1247	43	2		2	FCRL3	1	157666159	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	562067	157666159	91584462	53	144552											
SPTA1	6708	broad.mit.edu	37	chr1	158650594	158650594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaaactcaaaactcctGcttgcattcccaggataact	5	12	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158650594	T	T	158650594	1	4	179	0	1	0	0	0	0	0	0	0	15234	1334	46	3		3	SPTA1	1	158650594	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	984435	158650594	90600027	54	144553											
DARC	2532	broad.mit.edu	37	chr1	159176146	159176146	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacgcccctgctcctcgcccTattctgccaccaggccaccc	6	22	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159176146	A	A	159176146	3	1	179	1	0	0	0	0	1	0	0	0	4273	1522	53	5	950	5	DARC	1	159176146	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	525552	159176146	90074475	55	144554											
OR10J1	26476	broad.mit.edu	37	chr1	159409741	159409741	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatcatccgaatggatcttCatcttcacacacccatgtac	4	15	5	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159409741	T	T	159409741	3	4	179	1	0	0	0	0	1	0	0	0	11004	826	29	4	195	4	OR10J1	1	159409741	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	233595	159409741	89840880	56	144555											
CCDC19	25790	broad.mit.edu	37	chr1	159854433	159854433	+	Intron	SNP	C	A	A													ccaacctccacctaaacaacCcccaagatgggtggtgtcac							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159854433	A	A	159854433	1	1	179	0	1	0	0	0	0	0	0	0	2822	638	22	2		2	CCDC19	1	159854433	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	444692	159854433	89396188	57	144556	619	2									
CCDC19	25790	broad.mit.edu	37	chr1	159854441	159854441	+	Intron	SNP	T	C	C													cacctaaacaacccccaagaTgggtggtgtcaccgaaacaa							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159854441	C	C	159854441	1	2	179	0	1	0	0	0	0	0	0	0	2822	1479	51	5		5	CCDC19	1	159854441	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	8	159854441	89396180	58	144557	619	2									
COPA	1314	broad.mit.edu	37	chr1	160295244	160295244	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataagcactctgtaaataTttgttgaaggaatgaataaa	7	3	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160295244	C	C	160295244	1	2	179	0	1	0	0	0	0	0	0	0	3759	1508	52	5		5	COPA	1	160295244	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	440803	160295244	88955377	59	144558											
FCGR3A	2214	broad.mit.edu	37	chr1	161514811	161514811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcagagctttgtgaagGggccacgtaccacccagatc	12	12	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161514811	T	T	161514811	1	4	179	0	1	0	0	0	0	0	0	0	5841	1247	43	2		2	FCGR3A	1	161514811	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1219567	161514811	87735810	60	144559											
TBX19	9095	broad.mit.edu	37	chr1	168208421	168208421	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagactgtgtatttggaaatAatgatttctgtcattttaat	7	3	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168208421	T	T	168208421	1	4	179	0	1	0	0	0	0	0	0	0	15776	377	13	5		5	TBX19	1	168208421	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	6693610	168208421	81042200	61	144560											
KIFAP3	22920	broad.mit.edu	37	chr1	169951077	169951077	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttaaatcaataagctgttTagacattaacataaaaataa	3	4	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169951077	A	A	169951077	1	1	179	0	1	0	0	0	0	0	0	0	8381	1769	61	5		5	KIFAP3	1	169951077	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1742656	169951077	79299544	62	144561											
VAMP4	8674	broad.mit.edu	37	chr1	171678733	171678733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggttatgctctagaggccCttttttcttcatgtgtttga	10	7	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171678733	A	A	171678733	1	1	179	0	1	0	0	0	0	0	0	0	17242	696	24	2		2	VAMP4	1	171678733	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1727656	171678733	77571888	63	144562											
PAPPA2	60676	broad.mit.edu	37	chr1	176585881	176585881	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaataggaaatctcatgttCttgtatgtgactttcacagg	9	6	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176585881	A	A	176585881	1	1	179	0	1	0	0	0	0	0	0	0	11527	928	32	3		3	PAPPA2	1	176585881	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4907148	176585881	72664740	64	144563											
ASTN1	460	broad.mit.edu	37	chr1	176934192	176934192	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcaggtggtcgtgacaactCaaggtgtttcctattttata	10	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176934192	A	A	176934192	1	1	179	0	1	0	0	0	0	0	0	0	1068	841	29	3		3	ASTN1	1	176934192	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	348311	176934192	72316429	65	144564											
RALGPS2	55103	broad.mit.edu	37	chr1	178745997	178745997	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtaaagtttcttacctGgctttctaatttttcaagca	8	7	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178745997	A	A	178745997	1	1	179	0	1	0	0	0	0	0	0	0	13126	1363	47	4		4	RALGPS2	1	178745997	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1811805	178745997	70504624	66	144565											
TDRD5	163589	broad.mit.edu	37	chr1	179631496	179631496	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtaatcctagcagtttggGaggccaaggtgggtggatca	15	7	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179631496	T	T	179631496	1	4	179	0	1	0	0	0	0	0	0	0	15855	1189	41	3		3	TDRD5	1	179631496	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	885499	179631496	69619125	67	144566											
SMG7	9887	broad.mit.edu	37	chr1	183511692	183511692	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggctcacacaaaaggcaaGatttttcattttgttctaaa	6	7	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183511692	A	A	183511692	1	1	179	0	1	0	0	0	0	0	0	0	14912	957	33	4		4	SMG7	1	183511692	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3880196	183511692	65738929	68	144567											
GLT25D2	23127	broad.mit.edu	37	chr1	183920145	183920145	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaacccaactcactttcCatccacagcctcgacaatct	3	16	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183920145	A	A	183920145	4	1	179	1	0	0	0	0	0	1	0	0	6531	603	21	2	768	2	GLT25D2	1	183920145	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	408453	183920145	65330476	69	144568											
RGS13	6003	broad.mit.edu	37	chr1	192613467	192613467	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtatttccttagaaaaatGagcaggcggaattgttggat	11	5	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192613467	C	C	192613467	3	2	179	1	0	0	0	0	1	0	0	0	13405	1290	45	4	5	4	RGS13	1	192613467	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	8693322	192613467	56637154	70	144569											
CFH	3075	broad.mit.edu	37	chr1	196711226	196711226	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttatataatgtgtgggcCcagcccagtggctggcgcct	12	10	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196711226	T	T	196711226	1	4	179	0	1	0	0	0	0	0	0	0	3313	638	22	4		4	CFH	1	196711226	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4097759	196711226	52539395	71	144570											
CFHR1	3078	broad.mit.edu	37	chr1	196794686	196794686	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccattttcccaggttccTacaggggaagttttctatta	8	9	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196794686	C	C	196794686	2	2	179	1	0	0	0	0	0	0	0	1	3314	1509	53	5		5	CFHR1	1	196794686	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	83460	196794686	52455935	72	144571											
CFHR5	81494	broad.mit.edu	37	chr1	196953241	196953241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtgtagaacggggctggtCcactcctcccatatgcagct	12	12	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196953241	A	A	196953241	3	1	179	1	0	0	0	0	1	0	0	0	3318	855	30	3	414	3	CFHR5	1	196953241	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	158555	196953241	52297380	73	144572											
ASPM	259266	broad.mit.edu	37	chr1	197070516	197070516	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcctggtgctgttccTgaatctgtttttttatgttc	10	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197070516	A	A	197070516	3	1	179	1	0	0	0	0	1	0	0	0	1060	1580	55	5	2612	5	ASPM	1	197070516	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	117275	197070516	52180105	74	144573											
ASPM	259266	broad.mit.edu	37	chr1	197111524	197111524	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgagatgggtgttgtcaCattttttgttttcttaacag	9	4	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197111524	G	G	197111524	3	3	179	1	0	0	0	0	1	0	0	0	1060	478	17	4	8679	4	ASPM	1	197111524	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	41008	197111524	52139097	75	144574											
DENND1B	163486	broad.mit.edu	37	chr1	197716133	197716133	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctcttcaaggcctgatttCtcaacatttttccttttaac	3	12	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197716133	A	A	197716133	1	1	179	0	1	0	0	0	0	0	0	0	4467	928	32	3		3	DENND1B	1	197716133	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	604609	197716133	51534488	76	144575											
CACNA1S	779	broad.mit.edu	37	chr1	201031711	201031711	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggatagaaaagtgggctCtgggagtgaacagtggaagg	17	4	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201031711	T	T	201031711	1	4	179	0	1	0	0	0	0	0	0	0	2573	928	32	4		4	CACNA1S	1	201031711	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3315578	201031711	48218910	77	144576											
IGFN1	91156	broad.mit.edu	37	chr1	201185815	201185815	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtataccttccgagtgCgggctgtgacctcagagggg	16	9	1	2	rs35669472		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201185815	T	T	201185815	3	4	179	1	0	0	0	0	1	0	0	0	7660	759	27	4	9587	4	IGFN1	1	201185815	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	154104	201185815	48064806	78	144577											
LMOD1	25802	broad.mit.edu	37	chr1	201869186	201869186	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactctctccagaggctcatCaaatatgctgggagctgcct	9	13	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201869186	T	T	201869186	3	4	179	1	0	0	0	0	1	0	0	0	8930	826	29	4	855	4	LMOD1	1	201869186	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	683371	201869186	47381435	79	144578											
CDK18	5129	broad.mit.edu	37	chr1	205495285	205495285	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagcacgaggagggagcGccctgcactgccatccgaga	15	13	0	1	rs138968428		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205495285	A	A	205495285	2	1	179	1	0	0	0	0	0	0	0	1	3164	1074	38	4		4	CDK18	1	205495285	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	3626099	205495285	43755336	80	144579											
SLC26A9	115019	broad.mit.edu	37	chr1	205892841	205892841	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagccaaggtaggatgGggtcctgtcctcacccccag	14	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205892841	A	A	205892841	1	1	179	0	1	0	0	0	0	0	0	0	14638	1247	43	4		4	SLC26A9	1	205892841	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	397556	205892841	43357780	81	144580											
KCNH1	3756	broad.mit.edu	37	chr1	211032709	211032709	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagaccctgatcccacaCaggattatgatttcgaatgg	9	10	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211032709	A	A	211032709	1	1	179	0	1	0	0	0	0	0	0	0	8101	493	17	3		3	KCNH1	1	211032709	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	5139868	211032709	38217912	82	144581											
USH2A	7399	broad.mit.edu	37	chr1	216138678	216138679	+	Missense_Mutation	DNP	CC	AA	AA													cctgggtctacatagaatatCccagtgaaaaggactgagtg							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	216138679	AA	AA	216138678	3	1	179	1	0	0	0	0	1	0	0	0	17162	842	30	3	8651	3	USH2A	1	216138678	Missense_Mutation	DNP	CC	TCGA-55-5899-01A-11D-1625-08	5105969	216138678	33111943	83	144582											
USH2A	7399	broad.mit.edu	37	chr1	216497086	216497086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatctattcacatttttgGcaaaacagaaatcaaaatgt	4	6	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216497086	T	T	216497086	1	4	179	0	1	0	0	0	0	0	0	0	17162	1218	42	3		3	USH2A	1	216497086	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	358408	216497086	32753535	84	144583											
MIA3	375056	broad.mit.edu	37	chr1	222801057	222801057	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaactttacaggatatGgaaaaaaaccctgaattatc	6	6	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222801057	T	T	222801057	3	4	179	1	0	0	0	0	1	0	0	0	9658	1348	47	2	509	2	MIA3	1	222801057	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	6303971	222801057	26449564	85	144584											
MIA3	375056	broad.mit.edu	37	chr1	222833533	222833533	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttaggtcctctgagccagAatggctcttttggcccatcc	9	13	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222833533	T	T	222833533	3	4	179	1	0	0	0	0	1	0	0	0	9658	246	9	5	5084	5	MIA3	1	222833533	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	32476	222833533	26417088	86	144585											
LEFTY1	10637	broad.mit.edu	37	chr1	226075725	226075725	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaacgccaggaacctgccGgccacctctggggacaagag	12	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226075725	T	T	226075725	2	4	179	1	0	0	0	0	0	0	0	1	8787	1103	39	1		1	LEFTY1	1	226075725	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	3242192	226075725	23174896	87	144586											
CDC42BPA	8476	broad.mit.edu	37	chr1	227300367	227300367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaaatttgcctgactaCtaacctcttttttggctctt	4	11	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227300367	A	A	227300367	1	1	179	0	1	0	0	0	0	0	0	0	3102	580	20	3		3	CDC42BPA	1	227300367	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1224642	227300367	21950254	88	144587											
SIPA1L2	57568	broad.mit.edu	37	chr1	232600588	232600588	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagaaaacatgtacttactaCtaatcgctgaacaatttccc	4	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232600588	G	G	232600588	3	3	179	1	0	0	0	0	1	0	0	0	14443	565	20	4	2410	4	SIPA1L2	1	232600588	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	5300221	232600588	16650033	89	144588											
SIPA1L2	57568	broad.mit.edu	37	chr1	232600610	232600610	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatcgctgaacaatttccctGatgtcttcagcacagttgtc	7	11	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232600610	A	A	232600610	2	1	179	1	0	0	0	0	0	0	0	1	14443	1280	45	4		4	SIPA1L2	1	232600610	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	22	232600610	16650011	90	144589											
HEATR1	55127	broad.mit.edu	37	chr1	236760239	236760239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagaaagccaagagcaccCtcaactgagctgagctgccc	9	14	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236760239	A	A	236760239	3	1	179	1	0	0	0	0	1	0	0	0	7094	681	24	2	5953	2	HEATR1	1	236760239	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	4159629	236760239	12490382	91	144590											
RYR2	6262	broad.mit.edu	37	chr1	237759007	237759007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggaggaagacttctttcCcccattaaaggaaaacacag	9	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237759007	A	A	237759007	1	1	179	0	1	0	0	0	0	0	0	0	13880	638	22	2		2	RYR2	1	237759007	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	998768	237759007	11491614	92	144591											
RYR2	6262	broad.mit.edu	37	chr1	237788944	237788944	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatatttttttctgcctctCtgtttttttatactaggaat	4	6	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237788944	A	A	237788944	1	1	179	0	1	0	0	0	0	0	0	0	13880	928	32	3		3	RYR2	1	237788944	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	29937	237788944	11461677	93	144592											
RYR2	6262	broad.mit.edu	37	chr1	237789139	237789139	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcactggcagaatgaccCaactgctgacacttaactca	8	12	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237789139	A	A	237789139	1	1	179	0	1	0	0	0	0	0	0	0	13880	609	21	2		2	RYR2	1	237789139	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	195	237789139	11461482	94	144593											
RYR2	6262	broad.mit.edu	37	chr1	237948014	237948014	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaactgttagccaacatGccagaccccactcaggatga	9	13	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237948014	T	T	237948014	3	4	179	1	0	0	0	0	1	0	0	0	13880	1319	46	3	13360	3	RYR2	1	237948014	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	158875	237948014	11302607	95	144594											
ZP4	57829	broad.mit.edu	37	chr1	238048073	238048073	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcttggttactcacgactGagatcaggacaggtcaccac	10	12	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238048073	A	A	238048073	2	1	179	1	0	0	0	0	0	0	0	1	18347	1277	45	4		4	ZP4	1	238048073	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	100059	238048073	11202548	96	144595											
FMN2	56776	broad.mit.edu	37	chr1	240256850	240256850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgcggccggcctgagcCgctcggctgactggacggag	17	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240256850	A	A	240256850	3	1	179	1	0	0	0	0	1	0	0	0	6008	652	23	1	1443	1	FMN2	1	240256850	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2208777	240256850	8993771	97	144596											
RGS7	6000	broad.mit.edu	37	chr1	241094038	241094038	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataatctgtgttttccggctCccaacaatttgatggccaaa	7	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241094038	A	A	241094038	4	1	179	1	0	0	0	0	0	1	0	0	13419	864	30	3	1151	3	RGS7	1	241094038	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	837188	241094038	8156583	98	144597											
EXO1	9156	broad.mit.edu	37	chr1	242030245	242030245	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagagtcgggtactgtttcAgatgccccacaattgaagga	11	10	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242030245	T	T	242030245	2	4	179	1	0	0	0	0	0	0	0	1	5342	175	7	5		5	EXO1	1	242030245	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	936207	242030245	7220376	99	144598											
KIF26B	55083	broad.mit.edu	37	chr1	245848894	245848895	+	Missense_Mutation	DNP	CC	AA	AA													caccgtcatctacatcgggcCcaacggcacggccctctctg							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	245848895	AA	AA	245848894	3	1	179	1	0	0	0	0	1	0	0	0	8365	623	22	2	2655	2	KIF26B	1	245848894	Missense_Mutation	DNP	CC	TCGA-55-5899-01A-11D-1625-08	3818649	245848894	3401727	100	144599											
CNST	163882	broad.mit.edu	37	chr1	246811078	246811078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggcatactgcttccagaGgtgtgtatggccccagagga	13	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246811078	T	T	246811078	3	4	179	1	0	0	0	0	1	0	0	0	3666	991	35	2	1605	2	CNST	1	246811078	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	962184	246811078	2439543	101	144600											
NLRP3	114548	broad.mit.edu	37	chr1	247587935	247587935	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccagggcagccttcaGtctgattcaggagaacgagg	13	11	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247587935	T	T	247587935	3	4	179	1	0	0	0	0	1	0	0	0	10573	1029	36	3	1200	3	NLRP3	1	247587935	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	776857	247587935	1662686	102	144601											
OR1C1	26188	broad.mit.edu	37	chr1	247921054	247921054	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtggagaagataagtcCataagatacgaggatacaga	11	5	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247921054	A	A	247921054	4	1	179	1	0	0	0	0	0	1	0	0	11046	603	21	2	291	2	OR1C1	1	247921054	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	333119	247921054	1329567	103	144602											
OR2L13	284521	broad.mit.edu	37	chr1	248138210	248138211	+	Intron	DNP	CG	TT	TT													cttggacactcatctccacaCgcccatttatttcttactta							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	248138211	TT	TT	248138210	1	4	179	0	1	0	0	0	0	0	0	0	11100	551	19	4		4	OR2L13	1	248138210	Intron	DNP	CG	TCGA-55-5899-01A-11D-1625-08	217156	248138210	1112411	104	144603											
OR2M7	391196	broad.mit.edu	37	chr1	248487892	248487892	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatatgcctgttacctaGcaccgcaaaaacagttcatt	6	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248487892	T	T	248487892	1	4	179	0	1	0	0	0	0	0	0	0	11108	986	34	3		3	OR2M7	1	248487892	5'Flank	SNP	G	TCGA-55-5899-01A-11D-1625-08	349682	248487892	762729	105	144604											
OR2T3	343173	broad.mit.edu	37	chr1	248636689	248636689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttctcagaatcaaacagCaagcactgatttcaccctca	5	13	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248636689	A	A	248636689	3	1	179	1	0	0	0	0	1	0	0	0	11117	710	25	3	40	3	OR2T3	1	248636689	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	148797	248636689	613932	106	144605											
MYT1L	23040	broad.mit.edu	37	chr2	1920772	1920772	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagctttgttaggggcggtgGgcttcatggtgcaccactct	15	9	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1920772	C	C	1920772	1	2	179	0	1	0	0	0	0	0	0	0	10201	1247	43	4		4	MYT1L	2	1920772	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08		1920772	241278601	107	144606											
GREB1	9687	broad.mit.edu	37	chr2	11780633	11780633	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctcagagccctcatgctGttgaggctaaagggaggcct	14	10	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11780633	A	A	11780633	1	1	179	0	1	0	0	0	0	0	0	0	6826	1392	48	4		4	GREB1	2	11780633	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	9859861	11780633	231418740	108	144607											
SMC6	79677	broad.mit.edu	37	chr2	17907545	17907545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattactttaaatagatggCtttaaggaaaaaaaaaactc	6	4	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17907545	A	A	17907545	1	1	179	0	1	0	0	0	0	0	0	0	14901	812	28	3		3	SMC6	2	17907545	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	6126912	17907545	225291828	109	144608											
APOB	338	broad.mit.edu	37	chr2	21246300	21246300	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaatgatgaagcattttgtCttgaagtggaaacacatttt	8	5	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21246300	A	A	21246300	1	1	179	0	1	0	0	0	0	0	0	0	787	928	32	3		3	APOB	2	21246300	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3338755	21246300	221953073	110	144609											
RAB10	10890	broad.mit.edu	37	chr2	26332622	26332622	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgcttaatagaaattattGgctgtttatttcagggatac	8	4	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26332622	C	C	26332622	1	2	179	0	1	0	0	0	0	0	0	0	12998	1363	47	4		4	RAB10	2	26332622	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	5086322	26332622	216866751	111	144610											
CAD	790	broad.mit.edu	37	chr2	27462633	27462633	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgttcctcagctcccAccctcagcccctgccactag	9	19	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27462633	C	C	27462633	2	2	179	1	0	0	0	0	0	0	0	1	2591	146	6	5		5	CAD	2	27462633	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	1130011	27462633	215736740	112	144611											
PLB1	151056	broad.mit.edu	37	chr2	28855876	28855876	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcagaccgcgggcatgcCgagatggccatcgcactctg	12	14	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28855876	T	T	28855876	2	4	179	1	0	0	0	0	0	0	0	1	12119	639	23	4		4	PLB1	2	28855876	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	1393243	28855876	214343497	113	144612											
XDH	7498	broad.mit.edu	37	chr2	31594987	31594987	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggaggtcctggaggcacctCattatctttgcatctccatg	11	11	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31594987	T	T	31594987	1	4	179	0	1	0	0	0	0	0	0	0	17553	841	29	4		4	XDH	2	31594987	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2739111	31594987	211604386	114	144613											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44021745	44021745	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaagcagtttctgaaatgaGacagaagatctggaataata	9	4	2	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44021745	C	C	44021745	3	2	179	1	0	0	0	0	1	0	0	0	4887	942	33	4	492	4	DYNC2LI1	2	44021745	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	12426758	44021745	199177628	115	144614											
LHCGR	3973	broad.mit.edu	37	chr2	48935956	48935956	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtgatacactttgtctttCcaacagcagccttttcaggt	7	11	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48935956	T	T	48935956	1	4	179	0	1	0	0	0	0	0	0	0	8834	870	30	4		4	LHCGR	2	48935956	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4914211	48935956	194263417	116	144615											
NRXN1	9378	broad.mit.edu	37	chr2	50280681	50280681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctggccctgctctttccCgccaattattatggttgctt	10	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50280681	A	A	50280681	3	1	179	1	0	0	0	0	1	0	0	0	10760	652	23	1	679	1	NRXN1	2	50280681	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1344725	50280681	192918692	117	144616											
NRXN1	9378	broad.mit.edu	37	chr2	50463964	50463964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcacccaagcctgaagaaCtgtccactcgcaccaatacg	7	15	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50463964	A	A	50463964	3	1	179	1	0	0	0	0	1	0	0	0	10760	565	20	3	1038	3	NRXN1	2	50463964	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	183283	50463964	192735409	118	144617											
CCT4	10575	broad.mit.edu	37	chr2	62112193	62112193	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtccaaggcttgttctaaTagcatcagcaaccgctgcag	10	11	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62112193	C	C	62112193	3	2	179	1	0	0	0	0	1	0	0	0	2985	1406	49	5	1529	5	CCT4	2	62112193	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	11648229	62112193	181087180	119	144618											
ADD2	119	broad.mit.edu	37	chr2	70901905	70901905	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggttgggcaccgtctcctctGaatcgtctttggtatcctcg	11	12	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70901905	A	A	70901905	3	1	179	1	0	0	0	0	1	0	0	0	305	1294	45	4	636	4	ADD2	2	70901905	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	8789712	70901905	172297468	120	144619											
ANKRD53	79998	broad.mit.edu	37	chr2	71209077	71209077	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccacagtcagacatgcaAcggctccacgcccctgcacc	7	19	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71209077	G	G	71209077	3	3	179	1	0	0	0	0	1	0	0	0	679	43	2	5	643	5	ANKRD53	2	71209077	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	307172	71209077	171990296	121	144620											
DYSF	8291	broad.mit.edu	37	chr2	71747373	71747373	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttggccgtatccttgcatTttggttctggaggctgattg	12	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71747373	C	C	71747373	1	2	179	0	1	0	0	0	0	0	0	0	4899	1856	64	5		5	DYSF	2	71747373	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	538296	71747373	171452000	122	144621											
DYSF	8291	broad.mit.edu	37	chr2	71827870	71827870	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcgctgcatctgtcaaccGagtctggaacggatgccacg	13	12	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71827870	T	T	71827870	2	4	179	1	0	0	0	0	0	0	0	1	4899	1045	37	3		3	DYSF	2	71827870	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	80497	71827870	171371503	123	144622											
STAMBP	10617	broad.mit.edu	37	chr2	74086287	74086287	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagattgcagttgataTggatagctttaaacctcaga	8	6	2	3	rs76305876	byFrequency;by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74086287	C	C	74086287	1	2	179	0	1	0	0	0	0	0	0	0	15368	1479	51	5		5	STAMBP	2	74086287	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2258417	74086287	169113086	124	144623											
REG3G	130120	broad.mit.edu	37	chr2	79253230	79253230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagacactatgctgcctcCcatggccctgcccagtgtgt	10	16	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79253230	A	A	79253230	3	1	179	1	0	0	0	0	1	0	0	0	13321	623	22	2	13	2	REG3G	2	79253230	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	5166943	79253230	163946143	125	144624											
REG3G	130120	broad.mit.edu	37	chr2	79255046	79255046	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggccactgtgggagcctGtcaagaagcacaggtaagaa	13	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79255046	C	C	79255046	2	2	179	1	0	0	0	0	0	0	0	1	13321	1364	48	4		4	REG3G	2	79255046	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	1816	79255046	163944327	126	144625											
REG1B	5968	broad.mit.edu	37	chr2	79312277	79312277	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgagttggagacatagtcTagtttaatttttgacttcat	8	5	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79312277	A	A	79312277	1	1	179	0	1	0	0	0	0	0	0	0	13319	1537	53	5		5	REG1B	2	79312277	3'UTR	SNP	T	TCGA-55-5899-01A-11D-1625-08	57231	79312277	163887096	127	144626											
CTNNA2	1496	broad.mit.edu	37	chr2	80816720	80816720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaatataccaacgcaagGtggtggtattataaatttac	7	5	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80816720	T	T	80816720	1	4	179	0	1	0	0	0	0	0	0	0	4047	1276	44	3		3	CTNNA2	2	80816720	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1504443	80816720	162382653	128	144627											
SUCLG1	8802	broad.mit.edu	37	chr2	84650981	84650981	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaggatcaaaatgattttGaaacctattatctttaggat	6	4	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84650981	C	C	84650981	1	2	179	0	1	0	0	0	0	0	0	0	15482	1305	45	4		4	SUCLG1	2	84650981	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3834261	84650981	158548392	129	144628											
SH2D6	284948	broad.mit.edu	37	chr2	85662892	85662892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaacattcccatccggcGgctggatggcggacgccact	11	15	1	0	rs140818438		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85662892	T	T	85662892	3	4	179	1	0	0	0	0	1	0	0	0	14351	1116	39	1	366	1	SH2D6	2	85662892	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1011911	85662892	157536481	130	144629											
SMYD1	150572	broad.mit.edu	37	chr2	88396404	88396404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccctgcccatgagcttcCtagggagcaactgtcaccct	10	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88396404	A	A	88396404	1	1	179	0	1	0	0	0	0	0	0	0	14935	696	24	2		2	SMYD1	2	88396404	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2733512	88396404	154802969	131	144630											
PROM2	150696	broad.mit.edu	37	chr2	95952518	95952518	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccctccccttcccttgcActcccctaaccagccctgat	3	23	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95952518	G	G	95952518	1	3	179	0	1	0	0	0	0	0	0	0	12662	174	6	5		5	PROM2	2	95952518	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	7556114	95952518	147246855	132	144631											
ITPRIPL1	150771	broad.mit.edu	37	chr2	96991493	96991493	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acattttaacagggctcctaGagagggcggggagacgaagc	15	8	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96991493	C	C	96991493	1	2	179	0	1	0	0	0	0	0	0	0	7994	957	33	4		4	ITPRIPL1	2	96991493	5'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	1038975	96991493	146207880	133	144632											
TMEM131	23505	broad.mit.edu	37	chr2	98408868	98408868	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgctttttggcaatggCgatggaggctgctctgtaaa	12	8	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98408868	A	A	98408868	2	1	179	1	0	0	0	0	0	0	0	1	16167	755	27	3		3	TMEM131	2	98408868	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	1417375	98408868	144790505	134	144633											
VWA3B	200403	broad.mit.edu	37	chr2	98907069	98907069	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcaagatgtgatgaaaaTggcttttattttccaggtag	10	4	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98907069	A	A	98907069	3	1	179	1	0	0	0	0	1	0	0	0	17368	1461	51	5	3227	5	VWA3B	2	98907069	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	498201	98907069	144292304	135	144634											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105900904	105900904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaatcttgaaaccatcaCggcagggttaaatttgtcta	9	7	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105900904	A	A	105900904	1	1	179	0	1	0	0	0	0	0	0	0	15947	551	19	3		3	TGFBRAP1	2	105900904	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	6993835	105900904	137298469	136	144635											
RGPD4	285190	broad.mit.edu	37	chr2	108479106	108479106	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttggaattttttgcaaatGaaagcccttaattaatgtct	6	5	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108479106	A	A	108479106	1	1	179	0	1	0	0	0	0	0	0	0	13396	1305	45	4		4	RGPD4	2	108479106	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2578202	108479106	134720267	137	144636											
MARCO	8685	broad.mit.edu	37	chr2	119739028	119739028	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggagatgcaggggtcatGgggcctcctggagcccaggg	18	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119739028	C	C	119739028	3	2	179	1	0	0	0	0	1	0	0	0	9403	1348	47	4	844	4	MARCO	2	119739028	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	11259922	119739028	123460345	138	144637											
LIMS2	55679	broad.mit.edu	37	chr2	128415049	128415049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctcatggtacagctcCccattgctgttgacaatgcg	10	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128415049	A	A	128415049	2	1	179	1	0	0	0	0	0	0	0	1	8876	610	22	2		2	LIMS2	2	128415049	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	8676021	128415049	114784324	139	144638											
WDR33	55339	broad.mit.edu	37	chr2	128471125	128471125	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agataaaaagctccactgaaGatggaatgggcccacaaagt	10	8	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128471125	T	T	128471125	1	4	179	0	1	0	0	0	0	0	0	0	17414	957	33	3		3	WDR33	2	128471125	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	56076	128471125	114728248	140	144639											
THSD7B	80731	broad.mit.edu	37	chr2	138169178	138169178	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgtctcttgttggaacaGggaaaagcagaaagaaggag	13	4	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138169178	T	T	138169178	5	4	179	1	0	0	0	0	0	0	1	0	16003	1014	35	2	2652	2	THSD7B	2	138169178	Splice_Site	SNP	G	TCGA-55-5899-01A-11D-1625-08	9698053	138169178	105030195	141	144640											
LRP1B	53353	broad.mit.edu	37	chr2	141093288	141093288	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctacgttgatagagtacctCagactggtccagtgagtagt	11	9	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141093288	T	T	141093288	2	4	179	1	0	0	0	0	0	0	0	1	9042	813	29	4		4	LRP1B	2	141093288	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	2924110	141093288	102106085	142	144641											
LRP1B	53353	broad.mit.edu	37	chr2	141128881	141128881	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaattataaatttgaaattGagatagagtaaaaataacag	6	2	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141128881	C	C	141128881	1	2	179	0	1	0	0	0	0	0	0	0	9042	1305	45	4		4	LRP1B	2	141128881	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	35593	141128881	102070492	143	144642											
KYNU	8942	broad.mit.edu	37	chr2	143743548	143743548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcaggaggaattgctgGtgccttcattcatgaaaagc	13	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143743548	A	A	143743548	3	1	179	1	0	0	0	0	1	0	0	0	8659	1261	44	4	894	4	KYNU	2	143743548	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2614667	143743548	99455825	144	144643											
ZEB2	9839	broad.mit.edu	37	chr2	145182344	145182344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggacaaatgtgatctgagCgtggccaacataactcacct	9	11	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145182344	A	A	145182344	1	1	179	0	1	0	0	0	0	0	0	0	17750	783	27	3		3	ZEB2	2	145182344	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1438796	145182344	98017029	145	144644											
STAM2	10254	broad.mit.edu	37	chr2	152977303	152977303	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataagtaggattggaaacagTgtcttgtccagtgctacaaa	10	6	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152977303	C	C	152977303	3	2	179	1	0	0	0	0	1	0	0	0	15367	1696	59	5	218	5	STAM2	2	152977303	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	7794959	152977303	90222070	146	144645											
GALNT13	114805	broad.mit.edu	37	chr2	155157891	155157891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcatacaatattattgCattatttacaatgattgttc	3	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155157891	A	A	155157891	1	1	179	0	1	0	0	0	0	0	0	0	6273	725	25	3		3	GALNT13	2	155157891	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2180588	155157891	88041482	147	144646											
ERMN	57471	broad.mit.edu	37	chr2	158178194	158178194	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgcctggtgacctttgttCttcctgtcctcatcttcttc	7	14	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158178194	T	T	158178194	2	4	179	1	0	0	0	0	0	0	0	1	5277	912	32	4		4	ERMN	2	158178194	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	3020303	158178194	85021179	148	144647											
ACVR1	90	broad.mit.edu	37	chr2	158656025	158656036	+	Intron	DEL	AAGAAGAGATGT	-	-													ttgtacaactgtaaagggaaAagaagagatgtaagtaaagc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158656036	-	-	158656025	6	5	179	0	1	1	0	1	0	0	0	0	220	29	1	0		0	ACVR1	2	158656025	Intron	DEL	AAGAAGAGATGT	TCGA-55-5899-01A-11D-1625-08	477831	158656025	84543348	149	144648											
DPP4	1803	broad.mit.edu	37	chr2	162875299	162875299	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacacagaatagtactgacAcctttccggattcagctcac	7	12	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162875299	T	T	162875299	3	4	179	1	0	0	0	0	1	0	0	0	4769	159	6	5	984	5	DPP4	2	162875299	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	4219274	162875299	80324074	150	144649											
FAP	2191	broad.mit.edu	37	chr2	163051221	163051221	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagagtaccttgatcagtGcgtccatcatgaagggtgga	14	7	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163051221	T	T	163051221	2	4	179	1	0	0	0	0	0	0	0	1	5730	1306	46	3		3	FAP	2	163051221	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	175922	163051221	80148152	151	144650											
KCNH7	90134	broad.mit.edu	37	chr2	163693092	163693092	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactttcctctcttctgaccCcagcaatgcctgggcaattt	6	15	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163693092	G	G	163693092	3	3	179	1	0	0	0	0	1	0	0	0	8107	623	22	4	3454	4	KCNH7	2	163693092	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	641871	163693092	79506281	152	144651											
SCN3A	6328	broad.mit.edu	37	chr2	165953895	165953895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgtcaaacatgttacccGttgtcatgttaacacagtgg	8	8	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165953895	T	T	165953895	3	4	179	1	0	0	0	0	1	0	0	0	14031	1145	40	3	1920	3	SCN3A	2	165953895	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2260803	165953895	77245478	153	144652											
SCN3A	6328	broad.mit.edu	37	chr2	165984542	165984542	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagattattcatttcattgtCatcatcagtagcagcaaggt	7	8	5	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165984542	G	G	165984542	3	3	179	1	0	0	0	0	1	0	0	0	14031	826	29	4	3054	4	SCN3A	2	165984542	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	30647	165984542	77214831	154	144653											
SCN2A	6326	broad.mit.edu	37	chr2	166245307	166245307	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcgttgtttaacatcgGcctccttcttttcctggtca	7	13	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166245307	A	A	166245307	3	1	179	1	0	0	0	0	1	0	0	0	14029	1203	42	4	5189	4	SCN2A	2	166245307	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	260765	166245307	76954066	155	144654											
TTC21B	79809	broad.mit.edu	37	chr2	166785655	166785655	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattacttacctgcattggaCagaagctcagatactccata	6	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166785655	G	G	166785655	3	3	179	1	0	0	0	0	1	0	0	0	16814	478	17	4	2650	4	TTC21B	2	166785655	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	540348	166785655	76413718	156	144655											
SCN1A	6323	broad.mit.edu	37	chr2	166848855	166848855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcagacgtaggattcggcCaatcctagcaagacggatca	11	10	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166848855	A	A	166848855	3	1	179	1	0	0	0	0	1	0	0	0	14027	594	21	2	1103	2	SCN1A	2	166848855	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	63200	166848855	76350518	157	144656											
XIRP2	129446	broad.mit.edu	37	chr2	168103300	168103300	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaaggcagtctctggttGaacgtactgttagtgaaact	11	6	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168103300	A	A	168103300	3	1	179	1	0	0	0	0	1	0	0	0	17557	1291	45	4	5428	4	XIRP2	2	168103300	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1254445	168103300	75096073	158	144657											
STK39	27347	broad.mit.edu	37	chr2	169020026	169020026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttaagtacttttttccCatctatttagactaagttaa	3	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169020026	A	A	169020026	1	1	179	0	1	0	0	0	0	0	0	0	15423	609	21	2		2	STK39	2	169020026	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	916726	169020026	74179347	159	144658											
ABCB11	8647	broad.mit.edu	37	chr2	169792048	169792048	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagaatgtggtacaaatcaGagaatgcatcatctgggaat	11	6	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169792048	T	T	169792048	1	4	179	0	1	0	0	0	0	0	0	0	42	957	33	3		3	ABCB11	2	169792048	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	772022	169792048	73407325	160	144659											
ABCB11	8647	broad.mit.edu	37	chr2	169869891	169869891	+	Missense_Mutation	SNP	C	T	T													gagttcttgtaactcaacgtCgtagtcaataaaaacatctg							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169869891	T	T	169869891	3	4	179	1	0	0	0	0	1	0	0	0	42	884	31	4	3781	4	ABCB11	2	169869891	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	77843	169869891	73329482	161	144660	620	2									
ABCB11	8647	broad.mit.edu	37	chr2	169869897	169869897	+	Missense_Mutation	SNP	C	T	T													ttgtaactcaacgtcgtagtCaataaaaacatctgtcattg							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169869897	T	T	169869897	3	4	179	1	0	0	0	0	1	0	0	0	42	826	29	4	3787	4	ABCB11	2	169869897	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	6	169869897	73329476	162	144661	620	2									
MYO3B	140469	broad.mit.edu	37	chr2	171508025	171508025	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagtaaagcttttaatatgCccattaaaataggacacagt	6	6	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171508025	G	G	171508025	1	3	179	0	1	0	0	0	0	0	0	0	10171	754	26	4		4	MYO3B	2	171508025	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1638128	171508025	71691348	163	144662											
ITGA6	3655	broad.mit.edu	37	chr2	173334179	173334179	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatatgatttagtacattttGagctaaaatgtgttagaaga	8	2	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173334179	C	C	173334179	1	2	179	0	1	0	0	0	0	0	0	0	7950	1305	45	4		4	ITGA6	2	173334179	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1826154	173334179	69865194	164	144663											
EVX2	344191	broad.mit.edu	37	chr2	176948269	176948269	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcgctgcccgtgtgctgcAggttgaacaaagtgtctatt	11	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176948269	G	G	176948269	3	3	179	1	0	0	0	0	1	0	0	0	5337	188	7	5	1204	5	EVX2	2	176948269	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	3614090	176948269	66251104	165	144664											
TTN	7273	broad.mit.edu	37	chr2	179596608	179596608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccaagtgatctcaaagGgaggagtgcctgccacctca	11	11	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179596608	T	T	179596608	3	4	179	1	0	0	0	0	1	0	0	0	16861	1232	43	2	87755	2	TTN	2	179596608	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2648339	179596608	63602765	166	144665											
COL3A1	1281	broad.mit.edu	37	chr2	189854878	189854878	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggattgcctggacctccagtGagtcttcagcatctaataaa	9	10	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189854878	A	A	189854878	1	1	179	0	1	0	0	0	0	0	0	0	3720	1305	45	4		4	COL3A1	2	189854878	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	10258270	189854878	53344495	167	144666											
STAT1	6772	broad.mit.edu	37	chr2	191864282	191864282	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcaaatagaaaggagtaatCatcttcgttatctagtgtga	10	5	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191864282	T	T	191864282	1	4	179	0	1	0	0	0	0	0	0	0	15382	841	29	4		4	STAT1	2	191864282	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2009404	191864282	51335091	168	144667											
SDPR	8436	broad.mit.edu	37	chr2	192700754	192700754	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaccctcatagcgtaccttCtgtgcctgttccagggccac	8	16	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192700754	T	T	192700754	2	4	179	1	0	0	0	0	0	0	0	1	14083	912	32	4		4	SDPR	2	192700754	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	836472	192700754	50498619	169	144668											
DNAH7	56171	broad.mit.edu	37	chr2	196749414	196749414	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtaatttaaacgtattTcgagttcgatctgaaattgg	8	6	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196749414	A	A	196749414	2	1	179	1	0	0	0	0	0	0	0	1	4646	1770	62	5		5	DNAH7	2	196749414	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	4048660	196749414	46449959	170	144669											
ANKRD44	91526	broad.mit.edu	37	chr2	198011905	198011905	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagacatagtaagacgTgtcactcactctgtggttaa	9	7	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198011905	A	A	198011905	1	1	179	0	1	0	0	0	0	0	0	0	672	1711	59	5		5	ANKRD44	2	198011905	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1262491	198011905	45187468	171	144670											
AOX1	316	broad.mit.edu	37	chr2	201523957	201523957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacaagcacagaaactgtcCctaatgcaaatatctctgga	7	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201523957	A	A	201523957	3	1	179	1	0	0	0	0	1	0	0	0	731	623	22	2	3351	2	AOX1	2	201523957	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3512052	201523957	41675416	172	144671											
C2orf67	151050	broad.mit.edu	37	chr2	210887816	210887816	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagctgtgcttgacctttCaacctgatcctttttttcat	6	10	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210887816	T	T	210887816	3	4	179	1	0	0	0	0	1	0	0	0	2208	835	29	4	146	4	C2orf67	2	210887816	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	9363859	210887816	32311557	173	144672											
SPAG16	79582	broad.mit.edu	37	chr2	215145530	215145530	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcagcatgagctttcttaTacatctcctccatgtctaga	6	11	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215145530	C	C	215145530	1	2	179	0	1	0	0	0	0	0	0	0	15094	1421	49	5		5	SPAG16	2	215145530	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	4257714	215145530	28053843	174	144673											
FN1	2335	broad.mit.edu	37	chr2	216295517	216295518	+	Frame_Shift_Ins	INS	-	T	T													tccagccttggtagggcttcINStcccacgtttctccgaccac							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216295518	T	T	216295517	7	5	179	1	0	1	1	0	0	0	0	0	6020	912	32	0	7028	0	FN1	2	216295517	Frame_Shift_Ins	INS	-	TCGA-55-5899-01A-11D-1625-08	1149987	216295517	26903856	175	144674											
TNS1	7145	broad.mit.edu	37	chr2	218713187	218713187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctggcagactcgtaggGgtagcctcctccattgacca	12	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218713187	T	T	218713187	3	4	179	1	0	0	0	0	1	0	0	0	16466	1232	43	2	3597	2	TNS1	2	218713187	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2417670	218713187	24486186	176	144675											
C2orf62	375307	broad.mit.edu	37	chr2	219225397	219225397	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggtaaggatgagagcCagatgggagttgcactacac	16	6	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	219225397	G	G	219225397	1	3	179	0	1	0	0	0	0	0	0	0	2203	609	21	4		4	C2orf62	2	219225397	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	512210	219225397	23973976	177	144676											
VIL1	7429	broad.mit.edu	37	chr2	219292707	219292707	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatccggaaagggggcgtgGcttctggcatgaagcacgtg	18	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219292707	C	C	219292707	3	2	179	1	0	0	0	0	1	0	0	0	17291	1203	42	4	381	4	VIL1	2	219292707	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	67310	219292707	23906666	178	144677											
CRYBA2	1412	broad.mit.edu	37	chr2	219856956	219856956	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagtcggggtactcaaaGgccacccaactggaaaagga	13	9	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219856956	A	A	219856956	2	1	179	1	0	0	0	0	0	0	0	1	3940	987	35	4		4	CRYBA2	2	219856956	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	564249	219856956	23342417	179	144678											
SPEG	10290	broad.mit.edu	37	chr2	220337565	220337565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagctggatggggagggGttactgctcctgcaacagca	16	10	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220337565	T	T	220337565	1	4	179	0	1	0	0	0	0	0	0	0	15154	1276	44	3		3	SPEG	2	220337565	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	480609	220337565	22861808	180	144679											
PAX3	5077	broad.mit.edu	37	chr2	223084911	223084911	+	Frame_Shift_Del	DEL	G	-	-													tcatggggttggagggccccGacggaggcacaaagctgtct					rs45607236		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	223084911	-	-	223084911	7	5	179	1	0	1	0	1	0	0	0	0	11574	1059	37	0	440	0	PAX3	2	223084911	Frame_Shift_Del	DEL	G	TCGA-55-5899-01A-11D-1625-08	2747346	223084911	20114462	181	144680											
COL4A4	1286	broad.mit.edu	37	chr2	227919208	227919208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactaaaaggaggaggaatcCaagcttcagacaagtcctat	9	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227919208	A	A	227919208	1	1	179	0	1	0	0	0	0	0	0	0	3725	609	21	2		2	COL4A4	2	227919208	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4834297	227919208	15280165	182	144681											
COL4A3	1285	broad.mit.edu	37	chr2	228124819	228124819	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctttatgtagcaaaacatAaagttcaaatctgtcatgga	6	6	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228124819	G	G	228124819	1	3	179	0	1	0	0	0	0	0	0	0	3723	377	13	5		5	COL4A3	2	228124819	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	205611	228124819	15074554	183	144682											
DNER	92737	broad.mit.edu	37	chr2	230456401	230456401	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggattttgtcaggctcCtgagtagcaggaacaggctg	15	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230456401	T	T	230456401	2	4	179	1	0	0	0	0	0	0	0	1	4707	680	24	4		4	DNER	2	230456401	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	2331582	230456401	12742972	184	144683											
SP140L	93349	broad.mit.edu	37	chr2	231235658	231235658	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccggaagcaaggaaggaaAgtgaccaagcatgtggcaaa	14	8	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231235658	T	T	231235658	3	4	179	1	0	0	0	0	1	0	0	0	15077	72	3	5	581	5	SP140L	2	231235658	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	779257	231235658	11963715	185	144684											
HTR2B	3357	broad.mit.edu	37	chr2	231973592	231973592	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatccacacaaatatctccAggagcatttggagagtagtt	8	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231973592	T	T	231973592	3	4	179	1	0	0	0	0	1	0	0	0	7512	188	7	5	364	5	HTR2B	2	231973592	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	737934	231973592	11225781	186	144685											
USP40	55230	broad.mit.edu	37	chr2	234436080	234436080	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgactgccggagatctccTaaagtttttcttttatcaaa	6	8	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234436080	C	C	234436080	2	2	179	1	0	0	0	0	0	0	0	1	17199	1519	53	5		5	USP40	2	234436080	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	2462488	234436080	8763293	187	144686											
HDAC4	9759	broad.mit.edu	37	chr2	240016658	240016658	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgatttctgtgaccactggGactcgagaagaaacaggaca	12	9	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240016658	A	A	240016658	1	1	179	0	1	0	0	0	0	0	0	0	7076	1189	41	4		4	HDAC4	2	240016658	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	5580578	240016658	3182715	188	144687											
AQP12B	653437	broad.mit.edu	37	chr2	241621957	241621957	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcctcggccatgaggaactCctgcagggacacggtggggt	15	12	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241621957	G	G	241621957	3	3	179	1	0	0	0	0	1	0	0	0	827	864	30	4	637	4	AQP12B	2	241621957	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1605299	241621957	1577416	189	144688											
PASK	23178	broad.mit.edu	37	chr2	242065726	242065726	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtggaggtgacctggacGttcagccttggctcctctgc	15	12	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242065726	A	A	242065726	2	1	179	1	0	0	0	0	0	0	0	1	11566	1136	40	4		4	PASK	2	242065726	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	443769	242065726	1133647	190	144689											
HDLBP	3069	broad.mit.edu	37	chr2	242195580	242195580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcccatggggatttgCctcctctaaatcgtgtacct	8	13	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242195580	A	A	242195580	1	1	179	0	1	0	0	0	0	0	0	0	7092	754	26	3		3	HDLBP	2	242195580	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	129854	242195580	1003793	191	144690											
CHL1	10752	broad.mit.edu	37	chr3	419533	419533	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggagctaatttgaccatatCtaatgtaactttagaggacc	8	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	419533	A	A	419533	3	1	179	1	0	0	0	0	1	0	0	0	3380	913	32	3	1838	3	CHL1	3	419533	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08		419533	197602897	192	144691											
CHL1	10752	broad.mit.edu	37	chr3	432621	432621	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatggatatactaaaagatTttggttttcattgcagataa	7	4	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	432621	A	A	432621	1	1	179	0	1	0	0	0	0	0	0	0	3380	1856	64	5		5	CHL1	3	432621	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	13088	432621	197589809	193	144692											
CNTN6	27255	broad.mit.edu	37	chr3	1369106	1369106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagagaatgctatattaacGtacaagcatctttatatgcc	6	7	1	1	rs145695946	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1369106	T	T	1369106	1	4	179	0	1	0	0	0	0	0	0	0	3677	1160	40	3		3	CNTN6	3	1369106	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	936485	1369106	196653324	194	144693											
IL17RE	132014	broad.mit.edu	37	chr3	9956381	9956381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctcttacagacacctggGgctcttgatcctggcactgc	10	13	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9956381	T	T	9956381	3	4	179	1	0	0	0	0	1	0	0	0	7713	1232	43	2	1425	2	IL17RE	3	9956381	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	8587275	9956381	188066049	195	144694											
FBLN2	2199	broad.mit.edu	37	chr3	13659811	13659811	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccctgatggccagggcagGggctatgggaagggctgatc	19	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13659811	C	C	13659811	1	2	179	0	1	0	0	0	0	0	0	0	5756	1247	43	4		4	FBLN2	3	13659811	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3703430	13659811	184362619	196	144695											
FGD5	152273	broad.mit.edu	37	chr3	14862106	14862106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggcgggctcgtcagccCctggcattggaggtgccgca	16	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14862106	A	A	14862106	3	1	179	1	0	0	0	0	1	0	0	0	5893	623	22	2	1530	2	FGD5	3	14862106	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1202295	14862106	183160324	197	144696											
NR2C2	7182	broad.mit.edu	37	chr3	15065576	15065576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcatgatcatactgtgCataaaatgttggaagctact	9	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15065576	A	A	15065576	1	1	179	0	1	0	0	0	0	0	0	0	10718	725	25	3		3	NR2C2	3	15065576	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	203470	15065576	182956854	198	144697											
PLCL2	23228	broad.mit.edu	37	chr3	17052138	17052138	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatgaagcaacctctgtctCattactttataaactcatct	3	10	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17052138	G	G	17052138	3	3	179	1	0	0	0	0	1	0	0	0	12135	826	29	4	1300	4	PLCL2	3	17052138	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1986562	17052138	180970292	199	144698											
TBC1D5	9779	broad.mit.edu	37	chr3	17550136	17550136	+	Intron	DEL	T	-	-													cagagaaaaataataaattcTttttctgctatgactgggaa							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17550136	-	-	17550136	6	5	179	0	1	1	0	1	0	0	0	0	15745	1624	56	0		0	TBC1D5	3	17550136	Intron	DEL	T	TCGA-55-5899-01A-11D-1625-08	497998	17550136	180472294	200	144699											
SGOL1	151648	broad.mit.edu	37	chr3	20216036	20216036	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtaagcatcattggaactGacagatttgtgcattttttt	8	5	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20216036	C	C	20216036	2	2	179	1	0	0	0	0	0	0	0	1	14329	1277	45	4		4	SGOL1	3	20216036	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2665900	20216036	177806394	201	144700											
NEK10	152110	broad.mit.edu	37	chr3	27173292	27173292	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggatagagcttaaagtacGaagtaaaggaggtataaaat	12	2	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27173292	A	A	27173292	1	1	179	0	1	0	0	0	0	0	0	0	10417	1073	37	4		4	NEK10	3	27173292	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	6957256	27173292	170849138	202	144701											
TMPPE	643853	broad.mit.edu	37	chr3	33135131	33135131	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttttcacagccgggggcTgcgcggcattcagaatcccg	13	13	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33135131	A	A	33135131	3	1	179	1	0	0	0	0	1	0	0	0	16361	1580	55	5	808	5	TMPPE	3	33135131	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	5961839	33135131	164887299	203	144702											
SLC22A14	9389	broad.mit.edu	37	chr3	38359683	38359683	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactcatcctctgatggctcTttcaggaataaggtcaagga	10	9	5	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38359683	C	C	38359683	1	2	179	0	1	0	0	0	0	0	0	0	14558	1624	56	5		5	SLC22A14	3	38359683	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	5224552	38359683	159662747	204	144703											
SCN5A	6331	broad.mit.edu	37	chr3	38592217	38592217	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggagatcttggatgggttGgctgccatgaacttctcctc	12	9	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38592217	T	T	38592217	2	4	179	1	0	0	0	0	0	0	0	1	14035	1335	47	2		2	SCN5A	3	38592217	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	232534	38592217	159430213	205	144704											
MYRIP	25924	broad.mit.edu	37	chr3	40251629	40251629	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagctcaagcttctgcagTggggtgttggagaaagatcc	14	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40251629	C	C	40251629	1	2	179	0	1	0	0	0	0	0	0	0	10194	1711	59	5		5	MYRIP	3	40251629	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1659412	40251629	157770801	206	144705											
KIF15	56992	broad.mit.edu	37	chr3	44835823	44835823	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcaatggagaaaagtaatGagattgtgaatatacggacc	11	4	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44835823	C	C	44835823	3	2	179	1	0	0	0	0	1	0	0	0	8347	1291	45	4	784	4	KIF15	3	44835823	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	4584194	44835823	153186607	207	144706											
SLC6A20	54716	broad.mit.edu	37	chr3	45814192	45814192	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatggaacaccacatctgGggtattcaggctgcaccgcc	10	15	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45814192	T	T	45814192	1	4	179	0	1	0	0	0	0	0	0	0	14798	1247	43	2		2	SLC6A20	3	45814192	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	978369	45814192	152208238	208	144707											
PFKFB4	5210	broad.mit.edu	37	chr3	48563078	48563078	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataattatcctgaatttcctCgtaggtcatttcctcacaga	5	10	2	2	rs149503701	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48563078	T	T	48563078	3	4	179	1	0	0	0	0	1	0	0	0	11858	893	31	4	417	4	PFKFB4	3	48563078	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2748886	48563078	149459352	209	144708											
COL7A1	1294	broad.mit.edu	37	chr3	48611169	48611169	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgaccaccctgttgtggcGaaaaagagtctgatgagggg	14	8	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48611169	A	A	48611169	1	1	179	0	1	0	0	0	0	0	0	0	3736	1073	37	4		4	COL7A1	3	48611169	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	48091	48611169	149411261	210	144709											
COL7A1	1294	broad.mit.edu	37	chr3	48613254	48613254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtgggcaccactagccCcaagggcccccacttgtccc	10	19	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48613254	A	A	48613254	1	1	179	0	1	0	0	0	0	0	0	0	3736	638	22	2		2	COL7A1	3	48613254	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2085	48613254	149409176	211	144710											
C3orf62	375341	broad.mit.edu	37	chr3	49313794	49313794	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaactaaatctaggatcttCaacaactttttcagaaacaa	4	8	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49313794	T	T	49313794	1	4	179	0	1	0	0	0	0	0	0	0	2260	841	29	4		4	C3orf62	3	49313794	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	700540	49313794	148708636	212	144711											
RBM6	10180	broad.mit.edu	37	chr3	50102318	50102318	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtttcactgcattagccagGgtggtctcgatctcctgacg	11	11	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50102318	C	C	50102318	1	2	179	0	1	0	0	0	0	0	0	0	13252	1247	43	4		4	RBM6	3	50102318	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	788524	50102318	147920112	213	144712											
RAD54L2	23132	broad.mit.edu	37	chr3	51679135	51679135	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcccaggcagtatgtcGggtataccgttatggccaga	13	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51679135	A	A	51679135	3	1	179	1	0	0	0	0	1	0	0	0	13102	1116	39	4	2604	4	RAD54L2	3	51679135	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1576817	51679135	146343295	214	144713											
DNAH1	25981	broad.mit.edu	37	chr3	52356437	52356437	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctaggagcttcggctgGggcatctccctgagaagcag	13	12	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52356437	T	T	52356437	1	4	179	0	1	0	0	0	0	0	0	0	4637	1247	43	2		2	DNAH1	3	52356437	5'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	677302	52356437	145665993	215	144714											
DNAH1	25981	broad.mit.edu	37	chr3	52416447	52416447	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctacagaacctacccatCaccttcctcttctcagacac	4	18	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52416447	T	T	52416447	2	4	179	1	0	0	0	0	0	0	0	1	4637	816	29	4		4	DNAH1	3	52416447	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	60010	52416447	145605983	216	144715											
DNAH1	25981	broad.mit.edu	37	chr3	52416461	52416461	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccatcaccttcctcttctCagacacccaggtgccactgc	5	19	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52416461	T	T	52416461	3	4	179	1	0	0	0	0	1	0	0	0	4637	838	29	4	8125	4	DNAH1	3	52416461	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	14	52416461	145605969	217	144716											
NEK4	6787	broad.mit.edu	37	chr3	52778362	52778362	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcacttccattcctacttgCtatttttataacacctacaa	2	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52778362	G	G	52778362	1	3	179	0	1	0	0	0	0	0	0	0	10421	812	28	4		4	NEK4	3	52778362	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	361901	52778362	145244068	218	144717											
FLNB	2317	broad.mit.edu	37	chr3	58135872	58135872	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcagtggggagggaagagtCaaagagagcatcacccgcac	14	9	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58135872	G	G	58135872	2	3	179	1	0	0	0	0	0	0	0	1	5992	813	29	4		4	FLNB	3	58135872	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	5357510	58135872	139886558	219	144718											
CADPS	8618	broad.mit.edu	37	chr3	62484955	62484955	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctacattttctgtagtacaaGagtttgtgttaaaattcagc	7	6	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62484955	C	C	62484955	1	2	179	0	1	0	0	0	0	0	0	0	2596	957	33	4		4	CADPS	3	62484955	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4349083	62484955	135537475	220	144719											
SUCLG2	8801	broad.mit.edu	37	chr3	67548790	67548790	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaagttcttcaggctggTaggcacaagcgaagggaaag	13	6	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67548790	C	C	67548790	1	2	179	0	1	0	0	0	0	0	0	0	15483	1653	57	5		5	SUCLG2	3	67548790	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	5063835	67548790	130473640	221	144720											
FRMD4B	23150	broad.mit.edu	37	chr3	69236877	69236877	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcattttggaggaaaaatttCctagctgtggggcattaacc	11	7	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69236877	T	T	69236877	1	4	179	0	1	0	0	0	0	0	0	0	6112	870	30	4		4	FRMD4B	3	69236877	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1688087	69236877	128785553	222	144721											
CNTN3	5067	broad.mit.edu	37	chr3	74413726	74413726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgatattgtaagggcacCattttctatctgtgttctct	8	7	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74413726	A	A	74413726	3	1	179	1	0	0	0	0	1	0	0	0	3674	594	21	2	2037	2	CNTN3	3	74413726	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	5176849	74413726	123608704	223	144722											
ROBO2	6092	broad.mit.edu	37	chr3	77693809	77693810	+	Intron	DNP	CC	AA	AA													gagttaagtttagtttgcctCcatgtttctgttcaatttag							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	77693810	AA	AA	77693809	1	1	179	0	1	0	0	0	0	0	0	0	13625	870	30	3		3	ROBO2	3	77693809	Intron	DNP	CC	TCGA-55-5899-01A-11D-1625-08	3280083	77693809	120328621	224	144723											
EPHA6	285220	broad.mit.edu	37	chr3	96533434	96533434	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgctctctccggcccaagtGaatagtcctcgcgcaagcgg	12	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96533434	T	T	96533434	1	4	179	0	1	0	0	0	0	0	0	0	5213	1305	45	3		3	EPHA6	3	96533434	5'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	18839625	96533434	101488996	225	144724											
MINA	84864	broad.mit.edu	37	chr3	97686195	97686195	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttcagatctgttagcttGaacagggacccatagtatgt	9	9	3	2	rs143209673	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97686195	A	A	97686195	2	1	179	1	0	0	0	0	0	0	0	1	9679	1281	45	4		4	MINA	3	97686195	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	1152761	97686195	100336235	226	144725											
QTRTD1	79691	broad.mit.edu	37	chr3	113799036	113799036	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actacatctctgtttcttatCtgtgtgctctggcatgttgg	9	9	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113799036	G	G	113799036	1	3	179	0	1	0	0	0	0	0	0	0	12994	928	32	4		4	QTRTD1	3	113799036	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	16112841	113799036	84223394	227	144726											
C3orf15	89876	broad.mit.edu	37	chr3	119428747	119428747	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgccgtatccaagtaaGtaaccattatttgaaaactc	5	8	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119428747	T	T	119428747	1	4	179	0	1	0	0	0	0	0	0	0	2231	1044	36	3		3	C3orf15	3	119428747	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	5629711	119428747	78593683	228	144727											
NR1I2	8856	broad.mit.edu	37	chr3	119534135	119534135	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagatcttggtcagcttgctGagaagctgcccctccatcct	9	13	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119534135	A	A	119534135	1	1	179	0	1	0	0	0	0	0	0	0	10715	1305	45	4		4	NR1I2	3	119534135	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	105388	119534135	78488295	229	144728											
ATP2C1	27032	broad.mit.edu	37	chr3	130711883	130711883	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgttttatttctgtatAcaaaatgctgctactttact	5	6	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130711883	G	G	130711883	1	3	179	0	1	0	0	0	0	0	0	0	1147	406	14	5		5	ATP2C1	3	130711883	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	11177748	130711883	67310547	230	144729											
NPHP3	27031	broad.mit.edu	37	chr3	132423161	132423161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcttcttctggaatggaatCctcactgcccaaatccttag	6	12	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132423161	A	A	132423161	3	1	179	1	0	0	0	0	1	0	0	0	10675	855	30	3	2663	3	NPHP3	3	132423161	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1711278	132423161	65599269	231	144730											
EPHB1	2047	broad.mit.edu	37	chr3	134670814	134670814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaaactctactgcaacgGggatggggaatggatggtgc	14	8	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134670814	T	T	134670814	3	4	179	1	0	0	0	0	1	0	0	0	5216	1232	43	2	735	2	EPHB1	3	134670814	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2247653	134670814	63351616	232	144731											
SLITRK3	22865	broad.mit.edu	37	chr3	164906390	164906390	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttgggtaaccgggtggggGatgtactcatacacatgacc	13	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164906390	T	T	164906390	2	4	179	1	0	0	0	0	0	0	0	1	14858	1164	41	3		3	SLITRK3	3	164906390	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	30235576	164906390	33116040	233	144732											
USP13	8975	broad.mit.edu	37	chr3	179437871	179437871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcatggggtaggggtgGggagacggcaagggaactgc	20	6	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179437871	T	T	179437871	1	4	179	0	1	0	0	0	0	0	0	0	17170	1247	43	2		2	USP13	3	179437871	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	14531481	179437871	18584559	234	144733											
PARL	55486	broad.mit.edu	37	chr3	183547410	183547410	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagagccacctccttttttGgggccattagtccttatttc	7	11	0	1	rs17849792		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183547410	A	A	183547410	2	1	179	1	0	0	0	0	0	0	0	1	11545	1335	47	4		4	PARL	3	183547410	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	4109539	183547410	14475020	235	144734											
HTR3C	170572	broad.mit.edu	37	chr3	183770810	183770810	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtgtggtctgagctcctTtaagctccagggtttgggag	16	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183770810	C	C	183770810	1	2	179	0	1	0	0	0	0	0	0	0	7516	1856	64	5		5	HTR3C	3	183770810	5'Flank	SNP	T	TCGA-55-5899-01A-11D-1625-08	223400	183770810	14251620	236	144735											
MASP1	5648	broad.mit.edu	37	chr3	186947725	186947725	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagagacagatcagactctGggctccatcttgcccactgc	11	13	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186947725	C	C	186947725	1	2	179	0	1	0	0	0	0	0	0	0	9414	1363	47	4		4	MASP1	3	186947725	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3176915	186947725	11074705	237	144736											
MASP1	5648	broad.mit.edu	37	chr3	186974520	186974520	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgtcctcaaactgcaGgttgaccatgaaaccctcct	6	12	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186974520	T	T	186974520	3	4	179	1	0	0	0	0	1	0	0	0	9414	991	35	2	2416	2	MASP1	3	186974520	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	26795	186974520	11047910	238	144737											
LMLN	89782	broad.mit.edu	37	chr3	197717396	197717396	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttaaaatggtgaattttCagtaataattgtgttttaat	6	1	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197717396	T	T	197717396	1	4	179	0	1	0	0	0	0	0	0	0	8921	841	29	4		4	LMLN	3	197717396	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	10742876	197717396	305034	239	144738											
ZNF595	152687	broad.mit.edu	37	chr4	87124	87124	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaagcctataacttatcctCaacccttactaaacataaga	2	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87124	T	T	87124	3	4	179	1	0	0	0	0	1	0	0	0	18152	827	29	4	1743	4	ZNF595	4	87124	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08		87124	191067152	240	144739											
ADD1	118	broad.mit.edu	37	chr4	2901114	2901114	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatcgcctcccaagtggcaGattggtgagcaggaatttga	14	8	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2901114	A	A	2901114	2	1	179	1	0	0	0	0	0	0	0	1	304	933	33	4		4	ADD1	4	2901114	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2813990	2901114	188253162	241	144740											
CLNK	116449	broad.mit.edu	37	chr4	10599628	10599628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggcagactgaagttctgGaatttcaaatcgttggatcc	10	7	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10599628	T	T	10599628	3	4	179	1	0	0	0	0	1	0	0	0	3579	1165	41	3	1297	3	CLNK	4	10599628	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	7698514	10599628	180554648	242	144741											
CD38	952	broad.mit.edu	37	chr4	15780139	15780139	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcagtatcctggtcctgatCctcgtcgtggtgctcgcggt	13	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15780139	A	A	15780139	2	1	179	1	0	0	0	0	0	0	0	1	3039	845	30	3		3	CD38	4	15780139	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	5180511	15780139	175374137	243	144742											
CD38	952	broad.mit.edu	37	chr4	15835864	15835864	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactatcaatcttgcccagActggagaaaggactgcagca	9	10	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15835864	G	G	15835864	3	3	179	1	0	0	0	0	1	0	0	0	3039	275	10	5	538	5	CD38	4	15835864	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	55725	15835864	175318412	244	144743											
PROM1	8842	broad.mit.edu	37	chr4	16014962	16014962	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattaagggattgatagccCtgaaaaatatttcaaaataa	6	5	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16014962	A	A	16014962	5	1	179	1	0	0	0	0	0	0	1	0	12661	695	24	2	1588	2	PROM1	4	16014962	Splice_Site	SNP	C	TCGA-55-5899-01A-11D-1625-08	179098	16014962	175139314	245	144744											
DHX15	1665	broad.mit.edu	37	chr4	24531295	24531295	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaactcattataaagcacCcattcaggtttgtggtcaag	7	9	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24531295	T	T	24531295	4	4	179	1	0	0	0	0	0	1	0	0	4541	624	22	4	196	4	DHX15	4	24531295	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	8516333	24531295	166622981	246	144745											
LGI2	55203	broad.mit.edu	37	chr4	25014044	25014044	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctgggctgcgcgatggCcacgtacacatcgttcttgg	13	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25014044	A	A	25014044	3	1	179	1	0	0	0	0	1	0	0	0	8824	739	26	3	912	3	LGI2	4	25014044	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	482749	25014044	166140232	247	144746											
ANAPC4	29945	broad.mit.edu	37	chr4	25408419	25408423	+	Intron	DEL	TTGAT	-	-													ttgagcagctttcttttatcTtgatttttctttttgttcct							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25408423	-	-	25408419	6	5	179	0	1	1	0	1	0	0	0	0	604	1624	56	0		0	ANAPC4	4	25408419	Intron	DEL	TTGAT	TCGA-55-5899-01A-11D-1625-08	394375	25408419	165745857	248	144747											
ARAP2	116984	broad.mit.edu	37	chr4	36150074	36150074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagcttgagatgtttcagCtccaaataaaaacacacgtt	7	8	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36150074	A	A	36150074	3	1	179	1	0	0	0	0	1	0	0	0	841	797	28	3	2229	3	ARAP2	4	36150074	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	10741655	36150074	155004202	249	144748											
LIMCH1	22998	broad.mit.edu	37	chr4	41684566	41684566	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtactcattgctgatgcaaAttacattcagcttcgaaatg	8	8	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41684566	G	G	41684566	1	3	179	0	1	0	0	0	0	0	0	0	8869	116	4	5		5	LIMCH1	4	41684566	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	5534492	41684566	149469710	250	144749											
PDGFRA	5156	broad.mit.edu	37	chr4	54362072	54362072	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttccatcctgactccttGaaagggaggcactgcatgac	9	12	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54362072	C	C	54362072	1	2	179	0	1	0	0	0	0	0	0	0	11755	1305	45	4		4	PDGFRA	4	54362072	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	12677506	54362072	136792204	251	144750											
KIAA1211	57482	broad.mit.edu	37	chr4	57173832	57173832	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatggaaattgtgactcaGcaggacatcgtcctctcaga	9	12	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57173832	T	T	57173832	3	4	179	1	0	0	0	0	1	0	0	0	8285	962	34	3	258	3	KIAA1211	4	57173832	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2811760	57173832	133980444	252	144751											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68780441	68780441	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctcggagatcattttgGgattccccttaaggaaaaat	9	8	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68780441	A	A	68780441	2	1	179	1	0	0	0	0	0	0	0	1	16362	1219	43	4		4	TMPRSS11A	4	68780441	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	11606609	68780441	122373835	253	144752											
UGT2B15	7366	broad.mit.edu	37	chr4	69535513	69535513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgcaattcataatttccCttaaaaacactatcttctga	2	9	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69535513	A	A	69535513	1	1	179	0	1	0	0	0	0	0	0	0	17084	696	24	2		2	UGT2B15	4	69535513	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	755072	69535513	121618763	254	144753											
UGT2B10	7365	broad.mit.edu	37	chr4	69879796	69879796	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattggccctttctgctgtcAtgttactgaccattgacccc	7	14	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69879796	T	T	69879796	3	4	179	1	0	0	0	0	1	0	0	0	17082	217	8	5	2269	5	UGT2B10	4	69879796	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	344283	69879796	121274480	255	144754											
UGT2B7	7364	broad.mit.edu	37	chr4	69962880	69962880	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggagagggtaaaaaatatGatctatgtgctttactttga	10	3	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69962880	A	A	69962880	3	1	179	1	0	0	0	0	1	0	0	0	17088	1290	45	4	644	4	UGT2B7	4	69962880	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	83084	69962880	121191396	256	144755											
UGT2B7	7364	broad.mit.edu	37	chr4	69974127	69974127	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtttcatcctttttataaGagactaattttgaaagaatt	6	4	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69974127	T	T	69974127	1	4	179	0	1	0	0	0	0	0	0	0	17088	957	33	3		3	UGT2B7	4	69974127	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	11247	69974127	121180149	257	144756											
C4orf40	401137	broad.mit.edu	37	chr4	71024352	71024352	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcacccgctgccccacCtattgcagctgagcctgctg	10	17	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71024352	A	A	71024352	3	1	179	1	0	0	0	0	1	0	0	0	2292	681	24	2	393	2	C4orf40	4	71024352	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1050225	71024352	120129924	258	144757											
SMR3B	10879	broad.mit.edu	37	chr4	71255713	71255713	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaatatgaacaactgcaGcaggtgccaccaccaccaca	6	16	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71255713	T	T	71255713	1	4	179	0	1	0	0	0	0	0	0	0	14926	986	34	3		3	SMR3B	4	71255713	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	231361	71255713	119898563	259	144758											
MUC7	4589	broad.mit.edu	37	chr4	71347026	71347026	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcagctccaccagagaccAcagctgccccacccacacct	5	22	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71347026	T	T	71347026	3	4	179	1	0	0	0	0	1	0	0	0	10075	159	6	5	571	5	MUC7	4	71347026	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	91313	71347026	119807250	260	144759											
NPFFR2	10886	broad.mit.edu	37	chr4	72897945	72897945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgggccagtttgtctgggGgcccccgcttgggggcgcga	18	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72897945	T	T	72897945	1	4	179	0	1	0	0	0	0	0	0	0	10673	1247	43	2		2	NPFFR2	4	72897945	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1550919	72897945	118256331	261	144760											
AFM	173	broad.mit.edu	37	chr4	74363525	74363525	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaattgaatacataatccctCgaagcgtaaaaaagttagct	7	7	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74363525	T	T	74363525	1	4	179	0	1	0	0	0	0	0	0	0	361	899	31	4		4	AFM	4	74363525	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1465580	74363525	116790751	262	144761											
PRKG2	5593	broad.mit.edu	37	chr4	82010963	82010963	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgggtcccttgagctaatAtagaaataattaaaacaaaa	6	5	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82010963	G	G	82010963	1	3	179	0	1	0	0	0	0	0	0	0	12629	464	16	5		5	PRKG2	4	82010963	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	7647438	82010963	109143313	263	144762											
SPARCL1	8404	broad.mit.edu	37	chr4	88416260	88416260	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttggtttggaatgatcaGataataatcttgcatttgtc	9	5	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88416260	C	C	88416260	3	2	179	1	0	0	0	0	1	0	0	0	15112	942	33	4	1956	4	SPARCL1	4	88416260	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	6405297	88416260	102738016	264	144763											
UNC5C	8633	broad.mit.edu	37	chr4	96469795	96469795	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaagcaacgaggcaaattGaggaagtcaagagaactggg	14	5	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96469795	T	T	96469795	1	4	179	0	1	0	0	0	0	0	0	0	17119	1305	45	3		3	UNC5C	4	96469795	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	8053535	96469795	94684481	265	144764											
ADH5	128	broad.mit.edu	37	chr4	99996201	99996201	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgcctcaagtgctgctctCtgcaggcacagagatatgac	10	12	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99996201	G	G	99996201	5	3	179	1	0	0	0	0	0	0	1	0	311	927	32	4	311	4	ADH5	4	99996201	Splice_Site	SNP	C	TCGA-55-5899-01A-11D-1625-08	3526406	99996201	91158075	266	144765											
ADH1A	124	broad.mit.edu	37	chr4	100205962	100205962	+	Splice_Site	SNP	T	A	A													agtgggatgactttatcaccTggagagggataaaacaaatt							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100205962	A	A	100205962	5	1	179	1	0	0	0	0	0	0	1	0	307	1594	55	5	893	5	ADH1A	4	100205962	Splice_Site	SNP	T	TCGA-55-5899-01A-11D-1625-08	209761	100205962	90948314	267	144766	621	2									
ADH1A	124	broad.mit.edu	37	chr4	100205964	100205964	+	Intron	SNP	G	A	A													tgggatgactttatcacctgGagagggataaaacaaattct							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100205964	A	A	100205964	1	1	179	0	1	0	0	0	0	0	0	0	307	1189	41	4		4	ADH1A	4	100205964	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2	100205964	90948312	268	144767	621	2									
ADH1C	126	broad.mit.edu	37	chr4	100264040	100264040	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgaatgggtttcttgTagtcttgagggttgatgcat	12	6	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100264040	C	C	100264040	3	2	179	1	0	0	0	0	1	0	0	0	309	1638	57	5	403	5	ADH1C	4	100264040	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	58076	100264040	90890236	269	144768											
NFKB1	4790	broad.mit.edu	37	chr4	103504055	103504055	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcgattttatgaagaggaaGaaaatggtggagtctgggaa	14	2	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103504055	T	T	103504055	4	4	179	1	0	0	0	0	0	1	0	0	10470	943	33	3	902	3	NFKB1	4	103504055	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3240015	103504055	87650221	270	144769											
ARHGEF38	54848	broad.mit.edu	37	chr4	106510664	106510664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagcaccatgaaattgaaGcactcaggtgtatcaatggg	10	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106510664	T	T	106510664	1	4	179	0	1	0	0	0	0	0	0	0	909	986	34	3		3	ARHGEF38	4	106510664	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3006609	106510664	84643612	271	144770											
ANK2	287	broad.mit.edu	37	chr4	114195867	114195867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaagtcatggcctttctgCtctaccacatacagaatcaa	5	13	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114195867	T	T	114195867	1	4	179	0	1	0	0	0	0	0	0	0	621	812	28	4		4	ANK2	4	114195867	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	7685203	114195867	76958409	272	144771											
NDST4	64579	broad.mit.edu	37	chr4	115997820	115997821	+	Missense_Mutation	DNP	TG	CT	CT													aactaaagtatatttcccttTgccattatctgtaagaggag							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	115997821	CT	CT	115997820	3	2	179	1	0	0	0	0	1	0	0	0	10353	1821	63	5	2297	5	NDST4	4	115997820	Missense_Mutation	DNP	TG	TCGA-55-5899-01A-11D-1625-08	1801953	115997820	75156456	273	144772											
PRDM5	11107	broad.mit.edu	37	chr4	121737722	121737722	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcaagtctcctggtgctGctcaaaactacaagacaacc	8	14	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121737722	A	A	121737722	4	1	179	1	0	0	0	0	0	1	0	0	12566	1328	46	4	1181	4	PRDM5	4	121737722	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	5739902	121737722	69416554	274	144773											
KIAA1109	84162	broad.mit.edu	37	chr4	123095682	123095682	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactttaagggccctactgtCtgttaaaacagttacattaa	6	8	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123095682	G	G	123095682	1	3	179	0	1	0	0	0	0	0	0	0	8278	928	32	4		4	KIAA1109	4	123095682	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1357960	123095682	68058594	275	144774											
KIAA1109	84162	broad.mit.edu	37	chr4	123255688	123255688	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttcctccccagcccccaCctattcctgcaggtatttaa	4	17	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123255688	T	T	123255688	3	4	179	1	0	0	0	0	1	0	0	0	8278	507	18	4	12102	4	KIAA1109	4	123255688	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	160006	123255688	67898588	276	144775											
ADAD1	132612	broad.mit.edu	37	chr4	123317394	123317394	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttcttgaaatttatgttttGatttttttctagaagggaga	9	2	2	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123317394	A	A	123317394	1	1	179	0	1	0	0	0	0	0	0	0	231	1305	45	4		4	ADAD1	4	123317394	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	61706	123317394	67836882	277	144776											
FAT4	79633	broad.mit.edu	37	chr4	126328197	126328197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgatggtcttcagtcctcgGatatgagaattaatatcact	8	7	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126328197	T	T	126328197	3	4	179	1	0	0	0	0	1	0	0	0	5749	1174	41	3	5480	3	FAT4	4	126328197	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3010803	126328197	64826079	278	144777											
PCDH10	57575	broad.mit.edu	37	chr4	134072045	134072045	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgacaatgtgcccgctttCgaccaacccgtctacactgt	7	14	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134072045	T	T	134072045	2	4	179	1	0	0	0	0	0	0	0	1	11601	883	31	4		4	PCDH10	4	134072045	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	7743848	134072045	57082231	279	144778											
SLC10A7	84068	broad.mit.edu	37	chr4	147179844	147179844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctttctggggactcacCttctgccttgataccatcca	7	13	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147179844	A	A	147179844	3	1	179	1	0	0	0	0	1	0	0	0	14492	695	24	2	37	2	SLC10A7	4	147179844	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	13107799	147179844	43974432	280	144779											
LRBA	987	broad.mit.edu	37	chr4	151835258	151835258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttttcttttttttttttGtatccattaaccaaactctc	1	9	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151835258	T	T	151835258	1	4	179	0	1	0	0	0	0	0	0	0	9018	1392	48	3		3	LRBA	4	151835258	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4655414	151835258	39319018	281	144780											
SH3D19	152503	broad.mit.edu	37	chr4	152069310	152069310	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccttggttggaggctgttGagttggaatggtttttccat	13	6	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152069310	A	A	152069310	4	1	179	1	0	0	0	0	0	1	0	0	14362	1299	45	4	1410	4	SH3D19	4	152069310	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	234052	152069310	39084966	282	144781											
DCHS2	54798	broad.mit.edu	37	chr4	155157307	155157307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatttgcttagcatgaatatCccctgtcaaagggtcaatga	9	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155157307	A	A	155157307	3	1	179	1	0	0	0	0	1	0	0	0	4321	855	30	3	1622	3	DCHS2	4	155157307	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3087997	155157307	35996969	283	144782											
LRAT	9227	broad.mit.edu	37	chr4	155666158	155666160	+	Intron	DEL	CTT	-	-													taccatcctttttctttttcCtttttttttttttttttttt					rs66898606		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155666160	-	-	155666158	6	5	179	0	1	1	0	1	0	0	0	0	9017	696	24	0		0	LRAT	4	155666158	Intron	DEL	CTT	TCGA-55-5899-01A-11D-1625-08	508851	155666158	35488118	284	144783											
FSTL5	56884	broad.mit.edu	37	chr4	162841740	162841740	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctctctgctggtaacacaGtgtcttcccaaaccacagta	7	13	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162841740	A	A	162841740	2	1	179	1	0	0	0	0	0	0	0	1	6140	1020	36	4		4	FSTL5	4	162841740	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	7175582	162841740	28312536	285	144784											
MARCH1	55016	broad.mit.edu	37	chr4	165110177	165110177	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggataagagggagggGgagaagacatcctgttgttc	17	6	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165110177	A	A	165110177	1	1	179	0	1	0	0	0	0	0	0	0	9390	1247	43	4		4	MARCH1	4	165110177	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2268437	165110177	26044099	286	144785											
TLL1	7092	broad.mit.edu	37	chr4	166976321	166976321	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagggcgtttctgtggttatGacaaacctgaagacataaga	11	6	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166976321	A	A	166976321	3	1	179	1	0	0	0	0	1	0	0	0	16068	1290	45	4	1668	4	TLL1	4	166976321	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1866144	166976321	24177955	287	144786											
NEK1	4750	broad.mit.edu	37	chr4	170347354	170347354	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gactccatcttcagaaacttCattttcctgaatggtgatcc	6	11	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170347354	T	T	170347354	3	4	179	1	0	0	0	0	1	0	0	0	10416	835	29	4	971	4	NEK1	4	170347354	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3371033	170347354	20806922	288	144787											
GALNTL6	442117	broad.mit.edu	37	chr4	173942916	173942916	+	Intron	DEL	G	-	-													gcactctgggaggtcgaggtGggcagatcacctgaggttgg							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	173942916	-	-	173942916	6	5	179	0	1	1	0	1	0	0	0	0	6287	1363	47	0		0	GALNTL6	4	173942916	Intron	DEL	G	TCGA-55-5899-01A-11D-1625-08	3595562	173942916	17211360	289	144788											
MORF4	10934	broad.mit.edu	37	chr4	174537540	174537540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttgcctggtaattaaGtcccagtcatcaacaagcca	7	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174537540	T	T	174537540	3	4	179	1	0	0	0	0	1	0	0	0	9799	1020	36	3	455	3	MORF4	4	174537540	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	594624	174537540	16616736	290	144789											
GPM6A	2823	broad.mit.edu	37	chr4	176923438	176923438	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagcctttgggcgaggtgtAcgcgcccgcccgcgcactca	14	16	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176923438	G	G	176923438	1	3	179	0	1	0	0	0	0	0	0	0	6680	406	14	5		5	GPM6A	4	176923438	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	2385898	176923438	14230838	291	144790											
WDR17	116966	broad.mit.edu	37	chr4	177081355	177081355	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggttgtgttgactggctCacccttacataattgacaaa	9	8	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177081355	A	A	177081355	1	1	179	0	1	0	0	0	0	0	0	0	17404	841	29	3		3	WDR17	4	177081355	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	157917	177081355	14072921	292	144791											
WDR17	116966	broad.mit.edu	37	chr4	177100845	177100845	+	3'UTR	DEL	G	-	-													tgggagaaggattgcaggttGggagaggtgggaaatagcag							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	177100845	-	-	177100845	6	5	179	0	1	1	0	1	0	0	0	0	17404	1363	47	0		0	WDR17	4	177100845	3'UTR	DEL	G	TCGA-55-5899-01A-11D-1625-08	19490	177100845	14053431	293	144792											
VEGFC	7424	broad.mit.edu	37	chr4	177632878	177632878	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttatggtaaatattggagtCcgaaaaagagtgagattagc	11	3	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177632878	A	A	177632878	1	1	179	0	1	0	0	0	0	0	0	0	17279	870	30	3		3	VEGFC	4	177632878	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	532033	177632878	13521398	294	144793											
C4orf41	60684	broad.mit.edu	37	chr4	184626183	184626183	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaactgtcatcactctgccGcacgtgattgtggagaatat	9	10	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184626183	T	T	184626183	2	4	179	1	0	0	0	0	0	0	0	1	2293	1074	38	3		3	C4orf41	4	184626183	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	6993305	184626183	6528093	295	144794											
TUBB4Q	56604	broad.mit.edu	37	chr4	190904438	190904438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagagggtggcgttgtagGgctccaccacggtgtctgac	16	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190904438	T	T	190904438	3	4	179	1	0	0	0	0	1	0	0	0	16885	1232	43	2	762	2	TUBB4Q	4	190904438	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	6278255	190904438	249838	296	144795											
SLC12A7	10723	broad.mit.edu	37	chr5	1064428	1064428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcggaaggggcctcccCggggactcacagccagtgca	17	13	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1064428	A	A	1064428	1	1	179	0	1	0	0	0	0	0	0	0	14501	667	23	1		1	SLC12A7	5	1064428	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08		1064428	179850832	297	144796											
ADAMTS16	170690	broad.mit.edu	37	chr5	5182041	5182041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaatgttcgctctcactGgagggaacagcatgcttcca	9	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5182041	T	T	5182041	1	4	179	0	1	0	0	0	0	0	0	0	261	1363	47	2		2	ADAMTS16	5	5182041	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4117613	5182041	175733219	298	144797											
SEMA5A	9037	broad.mit.edu	37	chr5	9197192	9197192	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggtgcatgcacccgcGgtttaaattacccttgcctg	10	12	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9197192	A	A	9197192	1	1	179	0	1	0	0	0	0	0	0	0	14150	1131	39	4		4	SEMA5A	5	9197192	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4015151	9197192	171718068	299	144798											
TAS2R1	50834	broad.mit.edu	37	chr5	9629772	9629772	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatcatccatgggaccaGcttggatatcctcatcttca	8	12	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9629772	T	T	9629772	3	4	179	1	0	0	0	0	1	0	0	0	15684	962	34	3	530	3	TAS2R1	5	9629772	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	432580	9629772	171285488	300	144799											
DNAH5	1767	broad.mit.edu	37	chr5	13766118	13766118	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaagttccctgcagtcatCaattttaaggattcctgcca	6	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13766118	T	T	13766118	2	4	179	1	0	0	0	0	0	0	0	1	4644	825	29	4		4	DNAH5	5	13766118	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	4136346	13766118	167149142	301	144800											
DNAH5	1767	broad.mit.edu	37	chr5	13866451	13866451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatataaatttcatgaaCtcaatccatatttaaatatt	2	6	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13866451	A	A	13866451	1	1	179	0	1	0	0	0	0	0	0	0	4644	580	20	3		3	DNAH5	5	13866451	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	100333	13866451	167048809	302	144801											
TRIO	7204	broad.mit.edu	37	chr5	14358319	14358319	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggagctgcagaaggaGctgctggacgacgtgtatgc	17	8	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14358319	C	C	14358319	3	2	179	1	0	0	0	0	1	0	0	0	16677	962	34	4	2125	4	TRIO	5	14358319	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	491868	14358319	166556941	303	144802											
FBXL7	23194	broad.mit.edu	37	chr5	15928376	15928376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccatcaacgtggaccgcGccctcaaggtgctgacccgc	11	16	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928376	T	T	15928376	3	4	179	1	0	0	0	0	1	0	0	0	5781	1087	38	3	515	3	FBXL7	5	15928376	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1570057	15928376	164986884	304	144803											
FBXL7	23194	broad.mit.edu	37	chr5	15937076	15937076	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctttggtatccgacacgggCctggagtgcctggccctgaa	13	13	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15937076	G	G	15937076	2	3	179	1	0	0	0	0	0	0	0	1	5781	726	26	4		4	FBXL7	5	15937076	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	8700	15937076	164978184	305	144804											
CDH6	1004	broad.mit.edu	37	chr5	31294250	31294250	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tataaacagaaggacagggaGacccgtggagcccgagtctg	14	9	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31294250	T	T	31294250	3	4	179	1	0	0	0	0	1	0	0	0	3144	942	33	3	416	3	CDH6	5	31294250	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	15357174	31294250	149621010	306	144805											
CDH6	1004	broad.mit.edu	37	chr5	31299713	31299713	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacactgactgatgtcaaCgacaaccctccccgattccc	5	17	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31299713	T	T	31299713	2	4	179	1	0	0	0	0	0	0	0	1	3144	535	19	4		4	CDH6	5	31299713	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	5463	31299713	149615547	307	144806											
CDH6	1004	broad.mit.edu	37	chr5	31323173	31323173	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacagctcgcgacaacaccGatgtcagagatttcattaac	7	12	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323173	A	A	31323173	3	1	179	1	0	0	0	0	1	0	0	0	3144	1058	37	4	2173	4	CDH6	5	31323173	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	23460	31323173	149592087	308	144807											
ADAMTS12	81792	broad.mit.edu	37	chr5	33588844	33588844	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccatggtctggatgcacaGcacggttcgcttcttctccc	10	14	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33588844	A	A	33588844	2	1	179	1	0	0	0	0	0	0	0	1	257	962	34	4		4	ADAMTS12	5	33588844	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2265671	33588844	147326416	309	144808											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658415	33658415	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagggtctcgcaggggcgaTtgaaaccagcacagatgtcc	13	12	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33658415	A	A	33658415	3	1	179	1	0	0	0	0	1	0	0	0	257	1493	52	5	3792	5	ADAMTS12	5	33658415	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	69571	33658415	147256845	310	144809											
SLC45A2	51151	broad.mit.edu	37	chr5	33982488	33982488	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacacttatggcccaaaCcagcttcctccttgggttag	10	12	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33982488	G	G	33982488	3	3	179	1	0	0	0	0	1	0	0	0	14755	507	18	4	1216	4	SLC45A2	5	33982488	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	324073	33982488	146932772	311	144810											
UGT3A1	133688	broad.mit.edu	37	chr5	35954243	35954243	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggggtggcgtgtgctggGgtggggagaaccttcaaagg	21	5	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35954243	T	T	35954243	1	4	179	0	1	0	0	0	0	0	0	0	17089	1247	43	2		2	UGT3A1	5	35954243	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	1971755	35954243	144961017	312	144811											
C5orf33	133686	broad.mit.edu	37	chr5	36201245	36201245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacagcctgagttgcaacCctgttaatattgaatgacct	7	10	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36201245	A	A	36201245	3	1	179	1	0	0	0	0	1	0	0	0	2315	622	22	2	369	2	C5orf33	5	36201245	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	247002	36201245	144714015	313	144812											
NIPBL	25836	broad.mit.edu	37	chr5	37057471	37057471	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actattcttaatccatctgtCaaagtgcaggcatgctgttt	7	9	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37057471	G	G	37057471	1	3	179	0	1	0	0	0	0	0	0	0	10523	841	29	4		4	NIPBL	5	37057471	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	856226	37057471	143857789	314	144813											
DAB2	1601	broad.mit.edu	37	chr5	39394497	39394497	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgatcccgatggagaagtctCaaataaacataacctcccac	6	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39394497	T	T	39394497	1	4	179	0	1	0	0	0	0	0	0	0	4251	841	29	4		4	DAB2	5	39394497	5'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	2337026	39394497	141520763	315	144814											
CARD6	84674	broad.mit.edu	37	chr5	40853546	40853546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctaatgccaattcaagaGcctgggactcaatgtgagct	10	10	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853546	T	T	40853546	3	4	179	1	0	0	0	0	1	0	0	0	2676	962	34	3	2122	3	CARD6	5	40853546	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1459049	40853546	140061714	316	144815											
HCN1	348980	broad.mit.edu	37	chr5	45262467	45262467	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtggctgagtctgcggCggctgggactgctgtacctg	17	10	1	1	rs143994644	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45262467	T	T	45262467	2	4	179	1	0	0	0	0	0	0	0	1	7062	755	27	4		4	HCN1	5	45262467	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	4408921	45262467	135652793	317	144816											
HCN1	348980	broad.mit.edu	37	chr5	45262537	45262537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggaggcggtgggggagGcatagtggaaagttcgagcg	22	5	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45262537	T	T	45262537	3	4	179	1	0	0	0	0	1	0	0	0	7062	1203	42	3	517	3	HCN1	5	45262537	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	70	45262537	135652723	318	144817											
ITGA2	3673	broad.mit.edu	37	chr5	52361674	52361674	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacctgctcttttagaaaAtcttgggatccgatggagcc	9	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52361674	C	C	52361674	3	2	179	1	0	0	0	0	1	0	0	0	7945	101	4	5	1868	5	ITGA2	5	52361674	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	7099137	52361674	128553586	319	144818											
DHX29	54505	broad.mit.edu	37	chr5	54552476	54552476	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactaaaaatttttacattaGaatacagaattaacaccagt	3	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54552476	A	A	54552476	1	1	179	0	1	0	0	0	0	0	0	0	4543	957	33	4		4	DHX29	5	54552476	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2190802	54552476	126362784	320	144819											
CD180	4064	broad.mit.edu	37	chr5	66479106	66479106	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttaagtctacatggctcAtttttcccaagctgtggaat	9	9	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66479106	C	C	66479106	3	2	179	1	0	0	0	0	1	0	0	0	3002	217	8	5	424	5	CD180	5	66479106	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	11926630	66479106	114436154	321	144820											
TAF9	6880	broad.mit.edu	37	chr5	68665364	68665364	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcgctcacgtgccctttgCtctacagggaggagccggaa	12	14	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68665364	G	G	68665364	1	3	179	0	1	0	0	0	0	0	0	0	15654	812	28	4		4	TAF9	5	68665364	5'Flank	SNP	C	TCGA-55-5899-01A-11D-1625-08	2186258	68665364	112249896	322	144821											
VCAN	1462	broad.mit.edu	37	chr5	82837721	82837721	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacaactgccgatgaaattGaattagaaggtgctacacag	9	7	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82837721	T	T	82837721	4	4	179	1	0	0	0	0	0	1	0	0	17265	1291	45	3	8925	3	VCAN	5	82837721	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	14172357	82837721	98077539	323	144822											
SPATA9	83890	broad.mit.edu	37	chr5	95011109	95011109	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aattgtgcatatgcagtattCccttacctgaatgttatata	6	7	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95011109	T	T	95011109	1	4	179	0	1	0	0	0	0	0	0	0	15132	870	30	4		4	SPATA9	5	95011109	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	12173388	95011109	85904151	324	144823											
APC	324	broad.mit.edu	37	chr5	112173704	112173704	+	Frame_Shift_Del	DEL	C	-	-													attatgtttttgacaccaatCgacatgatgataataggtca							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112173704	-	-	112173704	7	5	179	1	0	1	0	1	0	0	0	0	765	876	31	0	2471	0	APC	5	112173704	Frame_Shift_Del	DEL	C	TCGA-55-5899-01A-11D-1625-08	17162595	112173704	68741556	325	144824											
DTWD2	285605	broad.mit.edu	37	chr5	118183794	118183794	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagacgtacctcttgtatGtaattatttttctccaagat	5	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118183794	A	A	118183794	2	1	179	1	0	0	0	0	0	0	0	1	4832	1372	48	4		4	DTWD2	5	118183794	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	6010090	118183794	62731466	326	144825											
DMXL1	1657	broad.mit.edu	37	chr5	118463826	118463826	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatatcaactcttgtgagcAgcaactgaacaccaccttct	7	12	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118463826	G	G	118463826	1	3	179	0	1	0	0	0	0	0	0	0	4634	203	7	5		5	DMXL1	5	118463826	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	280032	118463826	62451434	327	144826											
MARCH3	115123	broad.mit.edu	37	chr5	126250695	126250695	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacagtagctggtgtttgagGatgacagccagtgctccagg	14	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126250695	A	A	126250695	3	1	179	1	0	0	0	0	1	0	0	0	9394	1174	41	4	453	4	MARCH3	5	126250695	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	7786869	126250695	54664565	328	144827											
SLC27A6	28965	broad.mit.edu	37	chr5	128359320	128359320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttttttttgcagcttctttCcacttttgacttaataaagt	4	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128359320	A	A	128359320	3	1	179	1	0	0	0	0	1	0	0	0	14644	855	30	3	1194	3	SLC27A6	5	128359320	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2108625	128359320	52555940	329	144828											
RAPGEF6	51735	broad.mit.edu	37	chr5	130828525	130828525	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataaatgtatctattcctaTaggtttttaaaaagtcaacg	5	5	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130828525	C	C	130828525	1	2	179	0	1	0	0	0	0	0	0	0	13156	1421	49	5		5	RAPGEF6	5	130828525	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2469205	130828525	50086735	330	144829											
SLC4A9	83697	broad.mit.edu	37	chr5	139742515	139742515	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaattccagtggtcagttCgtcgggccagcaaccttcat	10	12	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139742515	T	T	139742515	3	4	179	1	0	0	0	0	1	0	0	0	14774	884	31	4	852	4	SLC4A9	5	139742515	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	8913990	139742515	41172745	331	144830											
PCDHB1	29930	broad.mit.edu	37	chr5	140430991	140430991	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttgcagtaacctgttgCagaaaagtgaaagtatatcc	10	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140430991	A	A	140430991	1	1	179	0	1	0	0	0	0	0	0	0	11628	725	25	3		3	PCDHB1	5	140430991	5'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	688476	140430991	40484269	332	144831											
PCDHB10	56126	broad.mit.edu	37	chr5	140573673	140573673	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacggccacctgttcgccctCaggtcgctggactacgaggc	12	15	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140573673	G	G	140573673	2	3	179	1	0	0	0	0	0	0	0	1	11629	813	29	4		4	PCDHB10	5	140573673	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	142682	140573673	40341587	333	144832											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740006	140740006	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgcgggaagcagcctctgTgtgttctggatttcgatact	12	8	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140740006	A	A	140740006	3	1	179	1	0	0	0	0	1	0	0	0	11657	1696	59	5	306	5	PCDHGB2	5	140740006	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	166333	140740006	40175254	334	144833											
PCDHGA5	56110	broad.mit.edu	37	chr5	140746246	140746246	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacacgctccttagtgaagaGagctgtgagaaaagcgagcc	13	9	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140746246	C	C	140746246	3	2	179	1	0	0	0	0	1	0	0	0	11651	933	33	4	2351	4	PCDHGA5	5	140746246	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	6240	140746246	40169014	335	144834											
FGF1	2246	broad.mit.edu	37	chr5	141993563	141993563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtcccatccactgtgcCatccggaaggatcctcagga	9	15	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141993563	A	A	141993563	3	1	179	1	0	0	0	0	1	0	0	0	5895	594	21	2	349	2	FGF1	5	141993563	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1247317	141993563	38921697	336	144835											
ABLIM3	22885	broad.mit.edu	37	chr5	148620448	148620448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaagctggttcctgagGgacctccctaaccaagcacc	9	15	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148620448	T	T	148620448	1	4	179	0	1	0	0	0	0	0	0	0	96	1247	43	2		2	ABLIM3	5	148620448	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	6626885	148620448	32294812	337	144836											
SLC36A2	153201	broad.mit.edu	37	chr5	150723186	150723186	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggaggcaaggggcgaGggaggagagaagagaatgca	22	3	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150723186	A	A	150723186	1	1	179	0	1	0	0	0	0	0	0	0	14708	1015	35	4		4	SLC36A2	5	150723186	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2102738	150723186	30192074	338	144837											
G3BP1	10146	broad.mit.edu	37	chr5	151180170	151180171	+	Intron	DEL	TG	-	-													ctcccataattttacacttaTgagaggcacatctcaattca							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151180171	-	-	151180170	6	5	179	0	1	1	0	1	0	0	0	0	6201	1479	51	0		0	G3BP1	5	151180170	Intron	DEL	TG	TCGA-55-5899-01A-11D-1625-08	456984	151180170	29735090	339	144838											
CLINT1	9685	broad.mit.edu	37	chr5	157218842	157218842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtctgaagaatttgaggCagcaggaggtgggcctagag	17	6	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157218842	A	A	157218842	3	1	179	1	0	0	0	0	1	0	0	0	3563	710	25	3	640	3	CLINT1	5	157218842	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	6038672	157218842	23696418	340	144839											
DOCK2	1794	broad.mit.edu	37	chr5	169507115	169507115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacccagatctgcctcatGctaagcctctgtctttgtgt	9	12	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169507115	T	T	169507115	1	4	179	0	1	0	0	0	0	0	0	0	4727	1334	46	3		3	DOCK2	5	169507115	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	12288273	169507115	11408145	341	144840											
DDX41	51428	broad.mit.edu	37	chr5	176940558	176940558	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggggtctggggaagctgaGcaactgagacacagcccaca	14	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176940558	C	C	176940558	1	2	179	0	1	0	0	0	0	0	0	0	4394	986	34	4		4	DDX41	5	176940558	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	7433443	176940558	3974702	342	144841											
N4BP3	23138	broad.mit.edu	37	chr5	177546877	177546877	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcgcgcgggtgacttcaGcaagacctcgctgccagaac	11	14	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177546877	T	T	177546877	3	4	179	1	0	0	0	0	1	0	0	0	10207	971	34	3	295	3	N4BP3	5	177546877	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	606319	177546877	3368383	343	144842											
ZNF354C	30832	broad.mit.edu	37	chr5	178488946	178488946	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgatggacattatgggcGgttgtaacttcctctctcca	9	11	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178488946	T	T	178488946	1	4	179	0	1	0	0	0	0	0	0	0	17992	1131	39	1		1	ZNF354C	5	178488946	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	942069	178488946	2426314	344	144843											
BTNL8	79908	broad.mit.edu	37	chr5	180375507	180375507	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtggaggagagcagcTgctcgctctctccatccact	13	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180375507	A	A	180375507	1	1	179	0	1	0	0	0	0	0	0	0	1577	1595	55	5		5	BTNL8	5	180375507	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1886561	180375507	539753	345	144844											
WRNIP1	56897	broad.mit.edu	37	chr6	2770552	2770552	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgtcctagactctagcCgtcccactgaccctctgagc	7	18	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2770552	A	A	2770552	3	1	179	1	0	0	0	0	1	0	0	0	17530	652	23	1	1223	1	WRNIP1	6	2770552	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08		2770552	168344515	346	144845											
RREB1	6239	broad.mit.edu	37	chr6	7230139	7230139	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagcaggacagcatcatcGaggccctgctgccgctgagc	14	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7230139	T	T	7230139	4	4	179	1	0	0	0	0	0	1	0	0	13790	1059	37	3	1833	3	RREB1	6	7230139	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	4459587	7230139	163884928	347	144846											
ELOVL2	54898	broad.mit.edu	37	chr6	11005668	11005668	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacaaggtgaggatacccctGagagaaagagcaggtctgtt	13	7	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11005668	A	A	11005668	2	1	179	1	0	0	0	0	0	0	0	1	5116	1277	45	4		4	ELOVL2	6	11005668	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	3775529	11005668	160109399	348	144847											
MYLIP	29116	broad.mit.edu	37	chr6	16130937	16130937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttaaacttagagtcaaGttcttcgtggagcctcatct	9	9	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16130937	T	T	16130937	3	4	179	1	0	0	0	0	1	0	0	0	10149	1020	36	3	243	3	MYLIP	6	16130937	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	5125269	16130937	154984130	349	144848											
KIF13A	63971	broad.mit.edu	37	chr6	17954134	17954134	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatggcaaagaatctcaggtCaaggatgtcactgaagagta	11	6	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17954134	T	T	17954134	1	4	179	0	1	0	0	0	0	0	0	0	8344	841	29	4		4	KIF13A	6	17954134	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1823197	17954134	153160933	350	144849											
HIST1H1E	3008	broad.mit.edu	37	chr6	26156692	26156692	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccgtgaagaagaaggcccGcaagtctgcaggtgcggcca	14	12	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26156692	C	C	26156692	3	2	179	1	0	0	0	0	1	0	0	0	7193	1087	38	4	76	4	HIST1H1E	6	26156692	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	8202558	26156692	144958375	351	144850											
OR12D3	81797	broad.mit.edu	37	chr6	29342926	29342926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagttgtggttccaaaacaaCcatcaccaatatagatccat	6	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29342926	T	T	29342926	3	4	179	1	0	0	0	0	1	0	0	0	11026	507	18	4	815	4	OR12D3	6	29342926	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3186234	29342926	141772141	352	144851											
ZFP57	346171	broad.mit.edu	37	chr6	29641443	29641443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagatagggggcactggcCggcccctctgcatgcaagga	16	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29641443	A	A	29641443	3	1	179	1	0	0	0	0	1	0	0	0	17777	652	23	1	1169	1	ZFP57	6	29641443	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	298517	29641443	141473624	353	144852											
MSH5	4439	broad.mit.edu	37	chr6	31727102	31727102	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcactgagacaaaggaaaGagaagtcagagttaggggct	14	6	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31727102	C	C	31727102	1	2	179	0	1	0	0	0	0	0	0	0	9967	957	33	4		4	MSH5	6	31727102	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2085659	31727102	139387965	354	144853											
C6orf48	50854	broad.mit.edu	37	chr6	31804940	31804940	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttagggaactggatacttGggtctccagaagggccaatg	13	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31804940	C	C	31804940	1	2	179	0	1	0	0	0	0	0	0	0	2388	1363	47	4		4	C6orf48	6	31804940	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	77838	31804940	139310127	355	144854											
SPDEF	25803	broad.mit.edu	37	chr6	34508806	34508806	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcacatccccacccaGgggcgagcgctggcggaact	14	15	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34508806	A	A	34508806	2	1	179	1	0	0	0	0	0	0	0	1	15142	991	35	4		4	SPDEF	6	34508806	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2703866	34508806	136606261	356	144855											
TCP11	6954	broad.mit.edu	37	chr6	35090142	35090142	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagaaagtcaaaggagtTgatctgtttagatccccaaa	10	6	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35090142	A	A	35090142	1	1	179	0	1	0	0	0	0	0	0	0	15835	1827	63	5		5	TCP11	6	35090142	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	581336	35090142	136024925	357	144856											
TEAD3	7005	broad.mit.edu	37	chr6	35445212	35445212	+	Intron	DEL	C	-	-													ctaccttccacctggcccagCccctcttccaagaccccagg					rs3215481		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35445212	-	-	35445212	6	5	179	0	1	1	0	1	0	0	0	0	15862	754	26	0		0	TEAD3	6	35445212	Intron	DEL	C	TCGA-55-5899-01A-11D-1625-08	355070	35445212	135669855	358	144857											
CPNE5	57699	broad.mit.edu	37	chr6	36710126	36710126	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggttggtgctgcgggtggGggacgcgggcgaatgccctg	22	8	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36710126	T	T	36710126	2	4	179	1	0	0	0	0	0	0	0	1	3847	1219	43	2		2	CPNE5	6	36710126	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	1264914	36710126	134404941	359	144858											
C6orf154	221424	broad.mit.edu	37	chr6	43477341	43477341	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgacgcccaggttaaggttGagctgcgccagggacgtggc	16	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43477341	T	T	43477341	2	4	179	1	0	0	0	0	0	0	0	1	2362	1277	45	3		3	C6orf154	6	43477341	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	6767215	43477341	127637726	360	144859											
SUPT3H	8464	broad.mit.edu	37	chr6	45066617	45066617	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaagtcctttgataagttGattgtcaatggctgtagact	11	5	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45066617	A	A	45066617	1	1	179	0	1	0	0	0	0	0	0	0	15515	1305	45	4		4	SUPT3H	6	45066617	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1589276	45066617	126048450	361	144860											
PKHD1	5314	broad.mit.edu	37	chr6	51890939	51890939	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acccaaaccaaagctgggtcCctgctgaagcctattcctga	8	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51890939	G	G	51890939	3	3	179	1	0	0	0	0	1	0	0	0	12066	622	22	4	8738	4	PKHD1	6	51890939	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	6824322	51890939	119224128	362	144861											
GCM1	8521	broad.mit.edu	37	chr6	52998849	52998849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgccagcttttttgctgGtgccactaagctctactcac	9	12	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52998849	T	T	52998849	1	4	179	0	1	0	0	0	0	0	0	0	6359	1276	44	3		3	GCM1	6	52998849	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1107910	52998849	118116218	363	144862											
TINAG	27283	broad.mit.edu	37	chr6	54208013	54208013	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcatatatgtacctcttcTtcctctttaggcttctttac	3	12	5	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54208013	C	C	54208013	1	2	179	0	1	0	0	0	0	0	0	0	16044	1624	56	5		5	TINAG	6	54208013	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1209164	54208013	116907054	364	144863											
LMBRD1	55788	broad.mit.edu	37	chr6	70386117	70386117	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catctactccttcaataaccGatttcttccctttacaacag	2	14	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70386117	T	T	70386117	4	4	179	1	0	0	0	0	0	1	0	0	8916	1059	37	3	70	3	LMBRD1	6	70386117	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	16178104	70386117	100728950	365	144864											
PGM3	5238	broad.mit.edu	37	chr6	83881763	83881763	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaccagcatgtcagaaaTagcatcaccagctgcctgca	7	13	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83881763	C	C	83881763	3	2	179	1	0	0	0	0	1	0	0	0	11895	1406	49	5	382	5	PGM3	6	83881763	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	13495646	83881763	87233304	366	144865											
GABRR1	2569	broad.mit.edu	37	chr6	89895196	89895196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaggggccagcatcagaCacaaggtggtggcaagacag	15	9	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89895196	A	A	89895196	1	1	179	0	1	0	0	0	0	0	0	0	6236	493	17	3		3	GABRR1	6	89895196	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	6013433	89895196	81219871	367	144866											
MAP3K7	6885	broad.mit.edu	37	chr6	91228301	91228301	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgaaaataatcaggaatgTtaaaacataattaaatcaaa	5	4	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91228301	C	C	91228301	1	2	179	0	1	0	0	0	0	0	0	0	9347	1740	60	5		5	MAP3K7	6	91228301	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1333105	91228301	79886766	368	144867											
MANEA	79694	broad.mit.edu	37	chr6	96034180	96034180	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaatcagtattaattattCaatgtaatgaaatttatgga	6	2	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96034180	T	T	96034180	1	4	179	0	1	0	0	0	0	0	0	0	9313	841	29	4		4	MANEA	6	96034180	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4805879	96034180	75080887	369	144868											
MCHR2	84539	broad.mit.edu	37	chr6	100390744	100390744	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccataaggatactctttgAggctgctcacatgttgacaa	8	9	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100390744	T	T	100390744	1	4	179	0	1	0	0	0	0	0	0	0	9476	319	11	5		5	MCHR2	6	100390744	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	4356564	100390744	70724323	370	144869											
C6orf186	728464	broad.mit.edu	37	chr6	110620078	110620078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcattttaaaaagctgatGggtttgtttactttattcaa	7	4	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110620078	T	T	110620078	1	4	179	0	1	0	0	0	0	0	0	0	2370	1363	47	2		2	C6orf186	6	110620078	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	10229334	110620078	60494989	371	144870											
LAMA4	3910	broad.mit.edu	37	chr6	112499347	112499347	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattttatccctcatatcatGggcttgctctaccagctgac	7	12	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112499347	A	A	112499347	3	1	179	1	0	0	0	0	1	0	0	0	8680	1348	47	4	4426	4	LAMA4	6	112499347	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1879269	112499347	58615720	372	144871											
DSE	29940	broad.mit.edu	37	chr6	116720740	116720740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacaacttgggtgccttGgcaatgttctgtgtgctgta	13	7	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116720740	T	T	116720740	3	4	179	1	0	0	0	0	1	0	0	0	4814	1339	47	2	329	2	DSE	6	116720740	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	4221393	116720740	54394327	373	144872											
SLC35F1	222553	broad.mit.edu	37	chr6	118635234	118635234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttcaccatcctcattgGgctggtgctctactcctcca	6	15	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118635234	T	T	118635234	3	4	179	1	0	0	0	0	1	0	0	0	14702	1232	43	2	1076	2	SLC35F1	6	118635234	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1914494	118635234	52479833	374	144873											
C6orf170	221322	broad.mit.edu	37	chr6	121544316	121544317	+	Intron	DNP	CC	AA	AA													ttctctttttggtcaaattaCctttttactaccaatctcaa							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	121544317	AA	AA	121544316	1	1	179	0	1	0	0	0	0	0	0	0	2367	522	18	3		3	C6orf170	6	121544316	Intron	DNP	CC	TCGA-55-5899-01A-11D-1625-08	2909082	121544316	49570751	375	144874											
NKAIN2	154215	broad.mit.edu	37	chr6	124979278	124979278	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcaagtcagtcccaagtaAgctgactaacatttataaag	7	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124979278	T	T	124979278	1	4	179	0	1	0	0	0	0	0	0	0	10531	87	3	5		5	NKAIN2	6	124979278	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	3434962	124979278	46135789	376	144875											
C6orf58	352999	broad.mit.edu	37	chr6	127898647	127898647	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaggtaagaatgactcttGttttcattgtaatgatctac	8	6	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127898647	A	A	127898647	1	1	179	0	1	0	0	0	0	0	0	0	2391	1392	48	4		4	C6orf58	6	127898647	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2919369	127898647	43216420	377	144876											
LAMA2	3908	broad.mit.edu	37	chr6	129465092	129465092	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaagtgccgatgatccttCtccagaactgctagaattta	7	11	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129465092	A	A	129465092	3	1	179	1	0	0	0	0	1	0	0	0	8678	913	32	3	704	3	LAMA2	6	129465092	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1566445	129465092	41649975	378	144877											
LAMA2	3908	broad.mit.edu	37	chr6	129649345	129649345	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggccagtctgtctttGcagccactgaagagctcaag	13	10	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129649345	A	A	129649345	1	1	179	0	1	0	0	0	0	0	0	0	8678	1334	46	4		4	LAMA2	6	129649345	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	184253	129649345	41465722	379	144878											
L3MBTL3	84456	broad.mit.edu	37	chr6	130381144	130381144	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atctttaaatagggctttggGataagggactaaaactgctc	10	6	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130381144	T	T	130381144	1	4	179	0	1	0	0	0	0	0	0	0	8665	1189	41	3		3	L3MBTL3	6	130381144	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	731799	130381144	40733923	380	144879											
TMEM200A	114801	broad.mit.edu	37	chr6	130761972	130761972	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcccattcaccatggggatTggcattttcattttcatttg	9	9	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130761972	A	A	130761972	2	1	179	1	0	0	0	0	0	0	0	1	16246	1800	63	5		5	TMEM200A	6	130761972	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	380828	130761972	40353095	381	144880											
ENPP3	5169	broad.mit.edu	37	chr6	132061443	132061444	+	Frame_Shift_Del	DEL	CC	-	-													gtaaaaacaagagccacacaCcggaaaactgccctgggtgg					rs149553053		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132061444	-	-	132061443	7	5	179	1	0	1	0	1	0	0	0	0	5173	507	18	0	2474	0	ENPP3	6	132061443	Frame_Shift_Del	DEL	CC	TCGA-55-5899-01A-11D-1625-08	1299471	132061443	39053624	382	144881											
TAAR2	9287	broad.mit.edu	37	chr6	132938383	132938383	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcagtgctctgcgaaacCagggatagaagaaaccatat	9	9	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132938383	A	A	132938383	3	1	179	1	0	0	0	0	1	0	0	0	15609	595	21	2	97	2	TAAR2	6	132938383	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	876940	132938383	38176684	383	144882											
TAAR2	9287	broad.mit.edu	37	chr6	132939368	132939368	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcatagaaaaactcaagaAaggcagagaagaatcaagga	9	5	3	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132939368	T	T	132939368	1	4	179	0	1	0	0	0	0	0	0	0	15609	29	1	5		5	TAAR2	6	132939368	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	985	132939368	38175699	384	144883											
AHI1	54806	broad.mit.edu	37	chr6	135611406	135611406	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaaaactatcttctccaAggtcgcaaatggcctcccgg	7	14	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135611406	G	G	135611406	1	3	179	0	1	0	0	0	0	0	0	0	413	87	3	5		5	AHI1	6	135611406	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	2672038	135611406	35503661	385	144884											
IFNGR1	3459	broad.mit.edu	37	chr6	137519417	137519417	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatcaaaaccatttctggaGtgatcactctcagaacaatt	6	9	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137519417	A	A	137519417	2	1	179	1	0	0	0	0	0	0	0	1	7619	1020	36	4		4	IFNGR1	6	137519417	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	1908011	137519417	33595650	386	144885											
VTA1	51534	broad.mit.edu	37	chr6	142491482	142491483	+	Splice_Site	DNP	GA	TT	TT													ccgctctcttttctcttccaGaaacatgatcaagtccttct							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	142491483	TT	TT	142491482	5	4	179	1	0	0	0	0	0	0	1	0	17360	956	33	3	349	3	VTA1	6	142491482	Splice_Site	DNP	GA	TCGA-55-5899-01A-11D-1625-08	4972065	142491482	28623585	387	144886											
UTRN	7402	broad.mit.edu	37	chr6	144769762	144769762	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggctgtagcaaagctgggGatgtctcagattcctcagaa	12	9	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144769762	T	T	144769762	2	4	179	1	0	0	0	0	0	0	0	1	17230	1161	41	3		3	UTRN	6	144769762	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2278280	144769762	26345305	388	144887											
UTRN	7402	broad.mit.edu	37	chr6	145124231	145124231	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagttgtttcttttcgggtcGaacagcaaaaggtcacaaat	10	7	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145124231	A	A	145124231	3	1	179	1	0	0	0	0	1	0	0	0	17230	1058	37	4	9559	4	UTRN	6	145124231	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	354469	145124231	25990836	389	144888											
GRM1	2911	broad.mit.edu	37	chr6	146720526	146720526	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccgccaacttcaacgaggCcaaatatatcgcgttcacca	7	15	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146720526	T	T	146720526	3	4	179	1	0	0	0	0	1	0	0	0	6862	739	26	4	2377	4	GRM1	6	146720526	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1596295	146720526	24394541	390	144889											
UST	10090	broad.mit.edu	37	chr6	149262284	149262284	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaactgatatacatccttttTattaatctgattataggcct	5	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149262284	C	C	149262284	1	2	179	0	1	0	0	0	0	0	0	0	17220	1769	61	5		5	UST	6	149262284	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2541758	149262284	21852783	391	144890											
RBM16	22828	broad.mit.edu	37	chr6	155148467	155148467	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattaccgttaatattttTattatgaaagctttaagaca	5	4	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155148467	C	C	155148467	1	2	179	0	1	0	0	0	0	0	0	0	13226	1769	61	5		5	RBM16	6	155148467	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	5886183	155148467	15966600	392	144891											
IGF2R	3482	broad.mit.edu	37	chr6	160514939	160514939	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaggctgatcagcatggGgacagtgccatatctttatc	12	9	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160514939	A	A	160514939	1	1	179	0	1	0	0	0	0	0	0	0	7646	1247	43	4		4	IGF2R	6	160514939	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	5366472	160514939	10600128	393	144892											
IGF2R	3482	broad.mit.edu	37	chr6	160517307	160517307	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggctctatccatgtgcatcGagtggcctcgtaagctgtga	13	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160517307	T	T	160517307	1	4	179	0	1	0	0	0	0	0	0	0	7646	1073	37	3		3	IGF2R	6	160517307	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2368	160517307	10597760	394	144893											
QKI	9444	broad.mit.edu	37	chr6	163985668	163985668	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaagtggtgtgctcgaAaaagacattactgatgcctt	9	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163985668	G	G	163985668	1	3	179	0	1	0	0	0	0	0	0	0	12981	29	1	5		5	QKI	6	163985668	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	3468361	163985668	7129399	395	144894											
THBS2	7058	broad.mit.edu	37	chr6	169637775	169637775	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctggatggagggccccaaGcaggtgttgctggtgacgtc	17	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169637775	A	A	169637775	2	1	179	1	0	0	0	0	0	0	0	1	15977	963	34	4		4	THBS2	6	169637775	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	5652107	169637775	1477292	396	144895											
WDR27	253769	broad.mit.edu	37	chr6	170059146	170059147	+	Intron	DEL	AC	-	-													cagatggcacttattggtgaAcacacacacacactccacac							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170059147	-	-	170059146	6	5	179	0	1	1	0	1	0	0	0	0	17411	58	2	0		0	WDR27	6	170059146	Intron	DEL	AC	TCGA-55-5899-01A-11D-1625-08	421371	170059146	1055921	397	144896											
ADAP1	11033	broad.mit.edu	37	chr7	1009256	1009256	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtggctggtgccttccccActgggcagagtcaacaggac	13	14	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1009256	G	G	1009256	1	3	179	0	1	0	0	0	0	0	0	0	279	174	6	5		5	ADAP1	7	1009256	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08		1009256	158129407	398	144897											
INTS1	26173	broad.mit.edu	37	chr7	1539273	1539273	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcctcgatgtacacctgtGtggcagccacaccctcagcc	9	16	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1539273	A	A	1539273	1	1	179	0	1	0	0	0	0	0	0	0	7845	1392	48	4		4	INTS1	7	1539273	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	530017	1539273	157599390	399	144898											
CARD11	84433	broad.mit.edu	37	chr7	2963803	2963803	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcccctttgtaagagagcGagggggcaaggggtctttat	16	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2963803	T	T	2963803	1	4	179	0	1	0	0	0	0	0	0	0	2671	1073	37	3		3	CARD11	7	2963803	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1424530	2963803	156174860	400	144899											
CARD11	84433	broad.mit.edu	37	chr7	2972221	2972221	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggatttggctctctgcagCtaaaagggaggggaggggaa	19	5	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2972221	T	T	2972221	5	4	179	1	0	0	0	0	0	0	1	0	2671	811	28	4	2006	4	CARD11	7	2972221	Splice_Site	SNP	C	TCGA-55-5899-01A-11D-1625-08	8418	2972221	156166442	401	144900											
SDK1	221935	broad.mit.edu	37	chr7	4169711	4169711	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccagcacgcccctcatcctgGagcgcaccaaagacgatggt	10	16	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4169711	C	C	4169711	3	2	179	1	0	0	0	0	1	0	0	0	14081	1175	41	4	4217	4	SDK1	7	4169711	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1197490	4169711	154968952	402	144901											
USP42	84132	broad.mit.edu	37	chr7	6155200	6155200	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtattgtagtgcgctaacctActttcattttttcctctgaa	6	9	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6155200	G	G	6155200	1	3	179	0	1	0	0	0	0	0	0	0	17200	406	14	5		5	USP42	7	6155200	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	1985489	6155200	152983463	403	144902											
THSD7A	221981	broad.mit.edu	37	chr7	11468417	11468417	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatatgtctaatttgaaaTtttaataacatgtatgtatt	5	3	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11468417	G	G	11468417	1	3	179	0	1	0	0	0	0	0	0	0	16002	1508	52	5		5	THSD7A	7	11468417	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	5313217	11468417	147670246	404	144903											
TMEM195	392636	broad.mit.edu	37	chr7	15599958	15599958	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatgaaattattttacatttCctgattagtcatttcagaat	4	5	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15599958	A	A	15599958	1	1	179	0	1	0	0	0	0	0	0	0	16240	870	30	3		3	TMEM195	7	15599958	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4131541	15599958	143538705	405	144904											
MEOX2	4223	broad.mit.edu	37	chr7	15652076	15652076	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcatttgctatagagtccCctgtttgctggagggtggct	12	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15652076	T	T	15652076	3	4	179	1	0	0	0	0	1	0	0	0	9567	623	22	4	67	4	MEOX2	7	15652076	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	52118	15652076	143486587	406	144905											
HDAC9	9734	broad.mit.edu	37	chr7	18868729	18868729	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagatccaagcaatccCtctcctaccctctccattat	4	17	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18868729	A	A	18868729	1	1	179	0	1	0	0	0	0	0	0	0	7081	696	24	2		2	HDAC9	7	18868729	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3216653	18868729	140269934	407	144906											
HDAC9	9734	broad.mit.edu	37	chr7	18875335	18875336	+	Intron	DNP	CA	AT	AT													acgagattactgaattgtccCatgggaccaagaaccagtgc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	18875336	AT	AT	18875335	1	1	179	0	1	0	0	0	0	0	0	0	7081	609	21	2		2	HDAC9	7	18875335	Intron	DNP	CA	TCGA-55-5899-01A-11D-1625-08	6606	18875335	140263328	408	144907											
HDAC9	9734	broad.mit.edu	37	chr7	18975281	18975281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagagataataataggacCtaatccataaagttatttta	5	4	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18975281	A	A	18975281	1	1	179	0	1	0	0	0	0	0	0	0	7081	696	24	2		2	HDAC9	7	18975281	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	99946	18975281	140163382	409	144908											
TWISTNB	221830	broad.mit.edu	37	chr7	19739928	19739928	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagaaggaagaaagagCgtaacataaagaacacatcc	10	6	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19739928	A	A	19739928	1	1	179	0	1	0	0	0	0	0	0	0	16910	783	27	3		3	TWISTNB	7	19739928	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	764647	19739928	139398735	410	144909											
IGF2BP3	10643	broad.mit.edu	37	chr7	23507942	23507942	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccagcatcatcaacacAcacacccccgccataaactt	3	19	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23507942	T	T	23507942	1	4	179	0	1	0	0	0	0	0	0	0	7645	174	6	5		5	IGF2BP3	7	23507942	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	3768014	23507942	135630721	411	144910											
MPP6	51678	broad.mit.edu	37	chr7	24705690	24705690	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagaaaaagatgatgtatCtcacaaccagaaatgcaggt	8	6	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24705690	T	T	24705690	3	4	179	1	0	0	0	0	1	0	0	0	9832	913	32	4	960	4	MPP6	7	24705690	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1197748	24705690	134432973	412	144911											
HOXA5	3202	broad.mit.edu	37	chr7	27182769	27182769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctcgctgctggcagggGcgtcctcctcggctccggac	14	17	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27182769	T	T	27182769	3	4	179	1	0	0	0	0	1	0	0	0	7362	1203	42	3	362	3	HOXA5	7	27182769	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2477079	27182769	131955894	413	144912											
FKBP14	55033	broad.mit.edu	37	chr7	30065927	30065927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggggcataattacttaCgtggagtgaaataaggagcc	13	7	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30065927	A	A	30065927	1	1	179	0	1	0	0	0	0	0	0	0	5961	550	19	3		3	FKBP14	7	30065927	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2883158	30065927	129072736	414	144913											
CRHR2	1395	broad.mit.edu	37	chr7	30701759	30701759	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatgaccccccatggctggCccatccacttactgttcatt	6	17	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30701759	G	G	30701759	1	3	179	0	1	0	0	0	0	0	0	0	3904	754	26	4		4	CRHR2	7	30701759	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	635832	30701759	128436904	415	144914											
GHRHR	2692	broad.mit.edu	37	chr7	31013715	31013715	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcctccacctcccccagctCaaggagagccttctggtggc	11	17	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31013715	G	G	31013715	4	3	179	1	0	0	0	0	0	1	0	0	6437	838	29	4	739	4	GHRHR	7	31013715	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	311956	31013715	128124948	416	144915											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31124338	31124338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaagtcctgcatgtcctGtgctctgcttcaggattatt	9	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31124338	T	T	31124338	1	4	179	0	1	0	0	0	0	0	0	0	303	1392	48	3		3	ADCYAP1R1	7	31124338	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	110623	31124338	128014325	417	144916											
NT5C3	51251	broad.mit.edu	37	chr7	33055308	33055308	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttagatatccaattttcaGaatgtgctcaacattggcca	6	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33055308	A	A	33055308	2	1	179	1	0	0	0	0	0	0	0	1	10783	933	33	4		4	NT5C3	7	33055308	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	1930970	33055308	126083355	418	144917											
BBS9	27241	broad.mit.edu	37	chr7	33407239	33407239	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctactatggaaatcaaggtGaatatattatagctcacaca	7	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33407239	T	T	33407239	1	4	179	0	1	0	0	0	0	0	0	0	1347	1305	45	3		3	BBS9	7	33407239	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	351931	33407239	125731424	419	144918											
BBS9	27241	broad.mit.edu	37	chr7	33427748	33427748	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaccttgttagatggaaccTacaagcaggtcagtataata	8	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33427748	A	A	33427748	3	1	179	1	0	0	0	0	1	0	0	0	1347	1522	53	5	2177	5	BBS9	7	33427748	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	20509	33427748	125710915	420	144919											
NPSR1	387129	broad.mit.edu	37	chr7	34818232	34818232	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataccagagttagcttttAgatttatctaaggaaaatca	7	5	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34818232	G	G	34818232	1	3	179	0	1	0	0	0	0	0	0	0	10695	435	15	5		5	NPSR1	7	34818232	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	1390484	34818232	124320431	421	144920											
ELMO1	9844	broad.mit.edu	37	chr7	36909919	36909919	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacacacacgaacactgctAtaaaggagggctaggctggc	12	11	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36909919	T	T	36909919	1	4	179	0	1	0	0	0	0	0	0	0	5107	464	16	5		5	ELMO1	7	36909919	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	2091687	36909919	122228744	422	144921											
ELMO1	9844	broad.mit.edu	37	chr7	37262330	37262330	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagaacaattcagaaaatcaGaacacgaagtcagaagaggc	10	7	3	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37262330	A	A	37262330	1	1	179	0	1	0	0	0	0	0	0	0	5107	957	33	4		4	ELMO1	7	37262330	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	352411	37262330	121876333	423	144922											
VPS41	27072	broad.mit.edu	37	chr7	38816413	38816413	+	Intron	DEL	G	-	-													tacaggagtcatcatcaacaGgggcaaacagcagcacacat							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38816413	-	-	38816413	6	5	179	0	1	1	0	1	0	0	0	0	17337	1015	35	0		0	VPS41	7	38816413	Intron	DEL	G	TCGA-55-5899-01A-11D-1625-08	1554083	38816413	120322250	424	144923											
GLI3	2737	broad.mit.edu	37	chr7	42006172	42006172	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atagtgacgtccaccccagaGaggtcgcttctgcccgggag	13	13	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42006172	C	C	42006172	2	2	179	1	0	0	0	0	0	0	0	1	6503	929	33	4		4	GLI3	7	42006172	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	3189759	42006172	117132491	425	144924											
HECW1	23072	broad.mit.edu	37	chr7	43351607	43351607	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcctactattccatcggGcactctcaggacctggtcat	8	14	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43351607	A	A	43351607	2	1	179	1	0	0	0	0	0	0	0	1	7109	1190	42	4		4	HECW1	7	43351607	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	1345435	43351607	115787056	426	144925											
CAMK2B	816	broad.mit.edu	37	chr7	44294023	44294023	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatcgctctggggtgtggGtgagcagggatgctcagcac	16	11	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44294023	A	A	44294023	1	1	179	0	1	0	0	0	0	0	0	0	2626	1276	44	4		4	CAMK2B	7	44294023	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	942416	44294023	114844640	427	144926											
ABCA13	154664	broad.mit.edu	37	chr7	48337962	48337962	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttattttccttactttgcaGatgtaaaaataaaagatttg	5	5	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48337962	T	T	48337962	5	4	179	1	0	0	0	0	0	0	1	0	31	956	33	3	9118	3	ABCA13	7	48337962	Splice_Site	SNP	G	TCGA-55-5899-01A-11D-1625-08	4043939	48337962	110800701	428	144927											
ZPBP	11055	broad.mit.edu	37	chr7	49977048	49977048	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatgattaattttggcAtaataatttattatgttaat	4	1	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49977048	T	T	49977048	1	4	179	0	1	0	0	0	0	0	0	0	18348	232	8	5		5	ZPBP	7	49977048	3'UTR	SNP	A	TCGA-55-5899-01A-11D-1625-08	1639086	49977048	109161615	429	144928											
GRB10	2887	broad.mit.edu	37	chr7	50674011	50674011	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgaaaaggcactagacttCtgaagctcctggctttactt	9	10	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50674011	G	G	50674011	1	3	179	0	1	0	0	0	0	0	0	0	6822	928	32	4		4	GRB10	7	50674011	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	696963	50674011	108464652	430	144929											
VSTM2A	222008	broad.mit.edu	37	chr7	54610642	54610642	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtataaatagtgttctgtttGacgattttttttaaagttta	7	2	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54610642	T	T	54610642	1	4	179	0	1	0	0	0	0	0	0	0	17356	1305	45	3		3	VSTM2A	7	54610642	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3936631	54610642	104528021	431	144930											
ZNF679	168417	broad.mit.edu	37	chr7	63709559	63709559	+	Intron	DEL	A	-	-													gtgctgggtctgtcaccgtgAgagaggggtgagggctggtt							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63709559	-	-	63709559	6	5	179	0	1	1	0	1	0	0	0	0	18213	319	11	0		0	ZNF679	7	63709559	Intron	DEL	A	TCGA-55-5899-01A-11D-1625-08	9098917	63709559	95429104	432	144931											
CACNA2D1	781	broad.mit.edu	37	chr7	81599141	81599141	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggggagagcagatagtaGcagtaatttattatttaaaa	12	2	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81599141	T	T	81599141	1	4	179	0	1	0	0	0	0	0	0	0	2574	986	34	3		3	CACNA2D1	7	81599141	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	17889582	81599141	77539522	433	144932											
CACNA2D1	781	broad.mit.edu	37	chr7	81641520	81641520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttgcttagctttgtctcCtgctaaaaccattggtcttc	7	11	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81641520	T	T	81641520	3	4	179	1	0	0	0	0	1	0	0	0	2574	690	24	4	2063	4	CACNA2D1	7	81641520	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	42379	81641520	77497143	434	144933											
ADAM22	53616	broad.mit.edu	37	chr7	87758029	87758030	+	Intron	DNP	AG	TA	TA													ttttaagcctgtttgtgcctAgggtaaaactggtgagtgca							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	87758030	TA	TA	87758029	1	4	179	0	1	0	0	0	0	0	0	0	244	435	15	5		5	ADAM22	7	87758029	Intron	DNP	AG	TCGA-55-5899-01A-11D-1625-08	6116509	87758029	71380634	435	144934											
C7orf63	79846	broad.mit.edu	37	chr7	89906720	89906720	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tataactattttaaagtcttGactgtaaatattttatcggt	5	4	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89906720	A	A	89906720	1	1	179	0	1	0	0	0	0	0	0	0	2434	1305	45	4		4	C7orf63	7	89906720	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2148691	89906720	69231943	436	144935											
CLDN12	9069	broad.mit.edu	37	chr7	90042182	90042182	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcccggtatgacgggagCagtgactgcctgatgtacga	15	9	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90042182	T	T	90042182	2	4	179	1	0	0	0	0	0	0	0	1	3505	709	25	4		4	CLDN12	7	90042182	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	135462	90042182	69096481	437	144936											
PEX1	5189	broad.mit.edu	37	chr7	92148183	92148183	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgagctactgtgcctggcCccaattcattcttataattc	6	12	2	1	rs144544832	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92148183	A	A	92148183	1	1	179	0	1	0	0	0	0	0	0	0	11830	638	22	2		2	PEX1	7	92148183	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2106001	92148183	66990480	438	144937											
CCDC132	55610	broad.mit.edu	37	chr7	92970666	92970666	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtattttaattttaattctAattttgtcaaaatcacgtgg	5	4	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92970666	T	T	92970666	1	4	179	0	1	0	0	0	0	0	0	0	2793	377	13	5		5	CCDC132	7	92970666	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	822483	92970666	66167997	439	144938											
NPTX2	4885	broad.mit.edu	37	chr7	98254090	98254090	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcagtggctggtgtggagCggtctttggtcgcttgctgg	17	7	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98254090	A	A	98254090	1	1	179	0	1	0	0	0	0	0	0	0	10698	783	27	3		3	NPTX2	7	98254090	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	5283424	98254090	60884573	440	144939											
PTCD1	26024	broad.mit.edu	37	chr7	99022675	99022675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggactccaccacctcggCcagtagcgtgagggtcctga	12	16	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99022675	A	A	99022675	3	1	179	1	0	0	0	0	1	0	0	0	12833	739	26	3	634	3	PTCD1	7	99022675	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	768585	99022675	60115988	441	144940											
CYP3A5	1577	broad.mit.edu	37	chr7	99261603	99261603	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattttaccttttgtttgtcGttgaggcgacttttcttcat	8	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99261603	A	A	99261603	2	1	179	1	0	0	0	0	0	0	0	1	4213	1136	40	4		4	CYP3A5	7	99261603	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	238928	99261603	59877060	442	144941											
MCM7	4176	broad.mit.edu	37	chr7	99694902	99694902	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctgtcactatattcacctCccgcaaagcccaactactta	4	15	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99694902	A	A	99694902	1	1	179	0	1	0	0	0	0	0	0	0	9485	870	30	3		3	MCM7	7	99694902	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	433299	99694902	59443761	443	144942											
AP4M1	9179	broad.mit.edu	37	chr7	99703464	99703482	+	Intron	DEL	TTTCCCTCTTGGGAGTACA	-	-													ttgggctgggcttcagccctTttccctcttgggagtacagc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99703482	-	-	99703464	6	5	179	0	1	1	0	1	0	0	0	0	755	1856	64	0		0	AP4M1	7	99703464	Intron	DEL	TTTCCCTCTTGGGAGTACA	TCGA-55-5899-01A-11D-1625-08	8562	99703464	59435199	444	144943											
GPC2	221914	broad.mit.edu	37	chr7	99768065	99768065	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccccagccatccagtcatCtgcatactgctgtccccctc	6	19	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99768065	T	T	99768065	3	4	179	1	0	0	0	0	1	0	0	0	6663	913	32	4	215	4	GPC2	7	99768065	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	64601	99768065	59370598	445	144944											
ACTL6B	51412	broad.mit.edu	37	chr7	100253029	100253029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtcaggaggtgatggGtgggggccccttactcatgc	15	9	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100253029	T	T	100253029	1	4	179	0	1	0	0	0	0	0	0	0	199	1276	44	3		3	ACTL6B	7	100253029	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	484964	100253029	58885634	446	144945											
SLC26A5	375611	broad.mit.edu	37	chr7	103038452	103038452	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagctgaaatgccagttcCcattacgacctaaaaagaca	6	13	0	2	rs144199565		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103038452	A	A	103038452	4	1	179	1	0	0	0	0	0	1	0	0	14634	632	22	2	1425	2	SLC26A5	7	103038452	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2785423	103038452	56100211	447	144946											
RELN	5649	broad.mit.edu	37	chr7	103629559	103629559	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acccggcggcggcgagcgcgGaggtgctgcggtacctacca	17	14	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103629559	A	A	103629559	1	1	179	0	1	0	0	0	0	0	0	0	13328	1189	41	4		4	RELN	7	103629559	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	591107	103629559	55509104	448	144947											
SLC26A4	5172	broad.mit.edu	37	chr7	107338566	107338566	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attacaaaaacgtaagtaccTttgtgagacatttgctggac	8	7	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107338566	G	G	107338566	1	3	179	0	1	0	0	0	0	0	0	0	14633	1624	56	5		5	SLC26A4	7	107338566	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	3709007	107338566	51800097	449	144948											
PTPRZ1	5803	broad.mit.edu	37	chr7	121674370	121674370	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactgttgacttaggtattaCagcagacagctccaaccacc	7	12	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121674370	G	G	121674370	3	3	179	1	0	0	0	0	1	0	0	0	12922	478	17	4	5288	4	PTPRZ1	7	121674370	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	14335804	121674370	37464293	450	144949											
PAX4	5078	broad.mit.edu	37	chr7	127255536	127255536	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgggtatccagaggcagGggccggccattcacaaagag	15	11	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127255536	T	T	127255536	2	4	179	1	0	0	0	0	0	0	0	1	11575	1219	43	2		2	PAX4	7	127255536	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	5581166	127255536	31883127	451	144950											
FAM71F1	84691	broad.mit.edu	37	chr7	128357051	128357051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaacatcttcctgaagaGgtgagcaatgcagatgagaa	10	10	1	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128357051	T	T	128357051	3	4	179	1	0	0	0	0	1	0	0	0	5663	1014	35	2	440	2	FAM71F1	7	128357051	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1101515	128357051	30781612	452	144951											
CPA4	51200	broad.mit.edu	37	chr7	129962387	129962387	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacggcatcaaatttgcattCacatttgagttgagagatac	8	7	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129962387	T	T	129962387	2	4	179	1	0	0	0	0	0	0	0	1	3824	825	29	4		4	CPA4	7	129962387	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	1605336	129962387	29176276	453	144952											
CPA1	1357	broad.mit.edu	37	chr7	130023266	130023266	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtaagcgtccagccatctGgatcgacacgggcatccatt	10	13	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130023266	C	C	130023266	3	2	179	1	0	0	0	0	1	0	0	0	3821	1357	47	4	536	4	CPA1	7	130023266	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	60879	130023266	29115397	454	144953											
CALD1	800	broad.mit.edu	37	chr7	134645466	134645466	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagttggtctgtttacctagGaatggcagtgcccctgttct	11	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134645466	T	T	134645466	1	4	179	0	1	0	0	0	0	0	0	0	2607	1189	41	3		3	CALD1	7	134645466	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4622200	134645466	24493197	455	144954											
DGKI	9162	broad.mit.edu	37	chr7	137150727	137150727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgacaccaccatatctgGgtccagaataaaaatctcat	6	11	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137150727	T	T	137150727	3	4	179	1	0	0	0	0	1	0	0	0	4511	1232	43	2	666	2	DGKI	7	137150727	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2505261	137150727	21987936	456	144955											
DGKI	9162	broad.mit.edu	37	chr7	137255965	137255965	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacttcaatataaccatcatCatgacgctgaggttcgaaat	7	9	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137255965	T	T	137255965	3	4	179	1	0	0	0	0	1	0	0	0	4511	826	29	4	1358	4	DGKI	7	137255965	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	105238	137255965	21882698	457	144956											
TMEM213	155006	broad.mit.edu	37	chr7	138487821	138487821	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgcaagcgtgagacccaGgctcggtgcacaaaatggtg	13	10	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138487821	T	T	138487821	1	4	179	0	1	0	0	0	0	0	0	0	16259	1015	35	2		2	TMEM213	7	138487821	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	1231856	138487821	20650842	458	144957											
TBXAS1	6916	broad.mit.edu	37	chr7	139715629	139715629	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaccatgaccctgagcacTggccaagcccggagaccttc	10	16	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139715629	A	A	139715629	3	1	179	1	0	0	0	0	1	0	0	0	15786	1580	55	5	1520	5	TBXAS1	7	139715629	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	1227808	139715629	19423034	459	144958											
DENND2A	27147	broad.mit.edu	37	chr7	140246656	140246656	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggttttgcccagggctggGaaaggggcttccatgacact	14	9	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140246656	A	A	140246656	2	1	179	1	0	0	0	0	0	0	0	1	4469	1165	41	4		4	DENND2A	7	140246656	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	531027	140246656	18892007	460	144959											
TRYX3	136541	broad.mit.edu	37	chr7	141952034	141952034	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatatggtccacaactgCcacagctcagttattttgga	8	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141952034	G	G	141952034	1	3	179	0	1	0	0	0	0	0	0	0	16729	754	26	4		4	TRYX3	7	141952034	3'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	1705378	141952034	17186629	461	144960											
PRSS1	5644	broad.mit.edu	37	chr7	142459794	142459794	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtaatcaacgcccgcgtgTccaccatctctctgcccacc	6	19	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142459794	A	A	142459794	3	1	179	1	0	0	0	0	1	0	0	0	12720	1667	58	5	380	5	PRSS1	7	142459794	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	507760	142459794	16678869	462	144961											
PRSS1	5644	broad.mit.edu	37	chr7	142460449	142460449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccttcccatgctgaggCtcccactgatacctaggccc	7	18	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142460449	A	A	142460449	1	1	179	0	1	0	0	0	0	0	0	0	12720	812	28	3		3	PRSS1	7	142460449	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	655	142460449	16678214	463	144962											
TRPV6	55503	broad.mit.edu	37	chr7	142569542	142569542	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctcctcagggtcccttgcCgaagcctttcccaattggca	8	16	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142569542	G	G	142569542	3	3	179	1	0	0	0	0	1	0	0	0	16725	652	23	4	85	4	TRPV6	7	142569542	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	109093	142569542	16569121	464	144963											
TRPV6	55503	broad.mit.edu	37	chr7	142573311	142573311	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggtagatgcagcacatGgtgaagcagatgatgtacag	16	6	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142573311	T	T	142573311	2	4	179	1	0	0	0	0	0	0	0	1	16725	1335	47	2		2	TRPV6	7	142573311	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	3769	142573311	16565352	465	144964											
KEL	3792	broad.mit.edu	37	chr7	142651190	142651190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaaaggtattaagggcaCtaggaggaagaaggaaagga	15	2	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142651190	A	A	142651190	1	1	179	0	1	0	0	0	0	0	0	0	8212	580	20	3		3	KEL	7	142651190	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	77879	142651190	16487473	466	144965											
OR9A2	135924	broad.mit.edu	37	chr7	142723355	142723355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctttgactttgtcattccGaagagtaaagatgaaaggat	9	6	2	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142723355	A	A	142723355	3	1	179	1	0	0	0	0	1	0	0	0	11342	1057	37	4	71	4	OR9A2	7	142723355	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	72165	142723355	16415308	467	144966											
TAS2R41	259287	broad.mit.edu	37	chr7	143175820	143175820	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcccttcatcctcatcttCagcaacctcaagcttcgaag	4	16	5	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143175820	T	T	143175820	2	4	179	1	0	0	0	0	0	0	0	1	15698	825	29	4		4	TAS2R41	7	143175820	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	452465	143175820	15962843	468	144967											
OR2F2	135948	broad.mit.edu	37	chr7	143632996	143632997	+	Missense_Mutation	DNP	CC	AA	AA													ctacatccggatcatctccaCcatcctaaagatccagtcca							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	143632997	AA	AA	143632996	3	1	179	1	0	0	0	0	1	0	0	0	11091	507	18	3	673	3	OR2F2	7	143632996	Missense_Mutation	DNP	CC	TCGA-55-5899-01A-11D-1625-08	457176	143632996	15505667	469	144968											
OR2F1	26211	broad.mit.edu	37	chr7	143657299	143657299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgccacaagtgtagtccCtcagctgctggcacattttc	8	13	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143657299	A	A	143657299	3	1	179	1	0	0	0	0	1	0	0	0	11090	681	24	2	238	2	OR2F1	7	143657299	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	24303	143657299	15481364	470	144969											
TPK1	27010	broad.mit.edu	37	chr7	144380139	144380139	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatatctttcaaatgatgatCactaaaaagcaggcactcag	6	8	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144380139	A	A	144380139	1	1	179	0	1	0	0	0	0	0	0	0	16528	841	29	3		3	TPK1	7	144380139	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	722840	144380139	14758524	471	144970											
KCNH2	3757	broad.mit.edu	37	chr7	150647133	150647133	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagtttaggtgaattaaagGagcccagtgaccctgcaggc	13	8	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150647133	A	A	150647133	1	1	179	0	1	0	0	0	0	0	0	0	8102	1174	41	4		4	KCNH2	7	150647133	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	6266994	150647133	8491530	472	144971											
MLL3	58508	broad.mit.edu	37	chr7	151846285	151846285	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaataattcacaagccCggaaagcaattcttgttaag	7	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151846285	T	T	151846285	1	4	179	0	1	0	0	0	0	0	0	0	9715	667	23	4		4	MLL3	7	151846285	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1199152	151846285	7292378	473	144972											
PAXIP1	22976	broad.mit.edu	37	chr7	154745873	154745873	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactatcacatagtttaaaaAttaaatatttgttgggatga	6	3	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154745873	G	G	154745873	1	3	179	0	1	0	0	0	0	0	0	0	11581	116	4	5		5	PAXIP1	7	154745873	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	2899588	154745873	4392790	474	144973											
ESYT2	57488	broad.mit.edu	37	chr7	158529909	158529909	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taagacgaggtattaggaccGagaaaaagagaatgagcagc	13	5	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158529909	A	A	158529909	1	1	179	0	1	0	0	0	0	0	0	0	5307	1073	37	4		4	ESYT2	7	158529909	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3784036	158529909	608754	475	144974											
FBXO25	26260	broad.mit.edu	37	chr8	401310	401310	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcgcttaatcaaagatcttCtgcaagacctaagctctacc	5	13	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	401310	G	G	401310	3	3	179	1	0	0	0	0	1	0	0	0	5793	912	32	4	539	4	FBXO25	8	401310	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08		401310	145962712	476	144975											
RP1L1	94137	broad.mit.edu	37	chr8	10465293	10465293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggcctccccttctgcCtctggggcctctacaccttc	8	18	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10465293	A	A	10465293	3	1	179	1	0	0	0	0	1	0	0	0	13644	680	24	2	891	2	RP1L1	8	10465293	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	10063983	10465293	135898729	477	144976											
MTMR7	9108	broad.mit.edu	37	chr8	17169218	17169219	+	Intron	INS	-	T	T													aacctctcatcacagccaggINStttgactgtatatttacaga							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17169219	T	T	17169218	6	5	179	0	1	1	1	0	0	0	0	0	10042	1276	44	0		0	MTMR7	8	17169218	Intron	INS	-	TCGA-55-5899-01A-11D-1625-08	6703925	17169218	129194804	478	144977											
EPB49	2039	broad.mit.edu	37	chr8	21927301	21927301	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggggccagtgagttcccCaccttgtcccgttccatcat	9	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21927301	T	T	21927301	1	4	179	0	1	0	0	0	0	0	0	0	5201	609	21	4		4	EPB49	8	21927301	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4758083	21927301	124436721	479	144978											
EBF2	64641	broad.mit.edu	37	chr8	25747273	25747273	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgcaggcagccctaccttccGatggatcgagtcttcttgct	10	14	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25747273	C	C	25747273	3	2	179	1	0	0	0	0	1	0	0	0	4921	1059	37	4	1017	4	EBF2	8	25747273	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3819972	25747273	120616749	480	144979											
UNC5D	137970	broad.mit.edu	37	chr8	35606136	35606136	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccactccctttgcattgaccAtcccgcactgtgcagatgtc	7	16	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35606136	T	T	35606136	3	4	179	1	0	0	0	0	1	0	0	0	17121	217	8	5	1904	5	UNC5D	8	35606136	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	9858863	35606136	110757886	481	144980											
HOOK3	84376	broad.mit.edu	37	chr8	42863026	42863026	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaataatgaactacagaaGaagagagccattattgaaga	9	6	0	6			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42863026	T	T	42863026	3	4	179	1	0	0	0	0	1	0	0	0	7351	933	33	3	1762	3	HOOK3	8	42863026	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	7256890	42863026	103500996	482	144981											
POTEA	340441	broad.mit.edu	37	chr8	43148006	43148006	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgtgtgtgtgtgtgtttGtggggggcgccctggctttc	18	7	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43148006	T	T	43148006	1	4	179	0	1	0	0	0	0	0	0	0	12356	1392	48	3		3	POTEA	8	43148006	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	284980	43148006	103216016	483	144982											
C8orf22	492307	broad.mit.edu	37	chr8	49986681	49986681	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaacttcatagatgacgAcaaaccacagcaaggtactt	7	9	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49986681	G	G	49986681	3	3	179	1	0	0	0	0	1	0	0	0	2444	275	10	5	125	5	C8orf22	8	49986681	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	6838675	49986681	96377341	484	144983											
XKR4	114786	broad.mit.edu	37	chr8	56366920	56366920	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccagcagctgggccggcagGatgggcacataggtgaagct	16	10	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56366920	A	A	56366920	1	1	179	0	1	0	0	0	0	0	0	0	17560	1189	41	4		4	XKR4	8	56366920	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	6380239	56366920	89997102	485	144984											
XKR4	114786	broad.mit.edu	37	chr8	56367338	56367338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggtaccagcgtctttgGggcaaacatctgggcagatg	13	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56367338	T	T	56367338	1	4	179	0	1	0	0	0	0	0	0	0	17560	1247	43	2		2	XKR4	8	56367338	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	418	56367338	89996684	486	144985											
NSMAF	8439	broad.mit.edu	37	chr8	59512715	59512715	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccacatagttctaaccatCtctctgagtgtcccacttta	4	13	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59512715	T	T	59512715	1	4	179	0	1	0	0	0	0	0	0	0	10769	928	32	4		4	NSMAF	8	59512715	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3145377	59512715	86851307	487	144986											
CHD7	55636	broad.mit.edu	37	chr8	61654428	61654428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagcagctccatgtgggGccccagggctgttcaggtac	15	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61654428	T	T	61654428	3	4	179	1	0	0	0	0	1	0	0	0	3361	1203	42	3	439	3	CHD7	8	61654428	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2141713	61654428	84709594	488	144987											
CHD7	55636	broad.mit.edu	37	chr8	61765329	61765329	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgaaaaataagaaagtgTacaatgtagaatgcccttga	9	4	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61765329	G	G	61765329	1	3	179	0	1	0	0	0	0	0	0	0	3361	1653	57	5		5	CHD7	8	61765329	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	110901	61765329	84598693	489	144988											
NKAIN3	286183	broad.mit.edu	37	chr8	63768742	63768742	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatcactaggcagaagcaaActtcctgtatttgtattaaa	7	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63768742	T	T	63768742	1	4	179	0	1	0	0	0	0	0	0	0	10532	58	2	5		5	NKAIN3	8	63768742	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	2003413	63768742	82595280	490	144989											
TRIM55	84675	broad.mit.edu	37	chr8	67086987	67086987	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattccatatgacttatctaAcatcttggggggaaagaata	8	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67086987	G	G	67086987	1	3	179	0	1	0	0	0	0	0	0	0	16654	58	2	5		5	TRIM55	8	67086987	3'UTR	SNP	A	TCGA-55-5899-01A-11D-1625-08	3318245	67086987	79277035	491	144990											
C8orf46	254778	broad.mit.edu	37	chr8	67405782	67405782	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtcttttgtggacccGcacaatgatccctgagccag	10	13	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67405782	T	T	67405782	1	4	179	0	1	0	0	0	0	0	0	0	2457	1102	38	3		3	C8orf46	8	67405782	5'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	318795	67405782	78958240	492	144991											
PREX2	80243	broad.mit.edu	37	chr8	68999912	68999912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgacgattatttcaaccaGttttgattcttacgcttcat	5	10	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68999912	T	T	68999912	1	4	179	0	1	0	0	0	0	0	0	0	12583	1044	36	3		3	PREX2	8	68999912	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1594130	68999912	77364110	493	144992											
EYA1	2138	broad.mit.edu	37	chr8	72127688	72127688	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacccatacagcaggacttTcgccaatgctgggatgagct	10	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72127688	A	A	72127688	4	1	179	1	0	0	0	0	0	1	0	0	5371	1792	62	5	259	5	EYA1	8	72127688	Nonsense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	3127776	72127688	74236334	494	144993											
TRPA1	8989	broad.mit.edu	37	chr8	72946498	72946498	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttacctgtaaattcaggagGatgtaaaagctgagtccaaa	9	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72946498	T	T	72946498	2	4	179	1	0	0	0	0	0	0	0	1	16702	1164	41	3		3	TRPA1	8	72946498	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	818810	72946498	73417524	495	144994											
HNF4G	3174	broad.mit.edu	37	chr8	76472782	76472782	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgggaaagaatctattaGtaaccagaaatggcaaaaac	9	5	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76472782	A	A	76472782	1	1	179	0	1	0	0	0	0	0	0	0	7321	1044	36	4		4	HNF4G	8	76472782	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3526284	76472782	69891240	496	144995											
ZFHX4	79776	broad.mit.edu	37	chr8	77618691	77618691	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaattcatatgaccagcgaaAagcacatgcataatatgatg	8	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77618691	T	T	77618691	4	4	179	1	0	0	0	0	0	1	0	0	17761	15	1	5	2370	5	ZFHX4	8	77618691	Nonsense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	1145909	77618691	68745331	497	144996											
PEX2	5828	broad.mit.edu	37	chr8	77896354	77896354	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgtttagttcaagtgcatCcaactggcttattcttagca	7	9	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77896354	T	T	77896354	3	4	179	1	0	0	0	0	1	0	0	0	11840	855	30	4	860	4	PEX2	8	77896354	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	277663	77896354	68467668	498	144997											
CA3	761	broad.mit.edu	37	chr8	86354306	86354306	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttatctgaatcacagtgctGagagggggtcctctccctgg	12	11	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86354306	A	A	86354306	2	1	179	1	0	0	0	0	0	0	0	1	2543	1277	45	4		4	CA3	8	86354306	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	8457952	86354306	60009716	499	144998											
CNGB3	54714	broad.mit.edu	37	chr8	87670433	87670433	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacagcctgacagctcacCctttgctccttcagctgccc	7	18	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87670433	T	T	87670433	1	4	179	0	1	0	0	0	0	0	0	0	3633	638	22	4		4	CNGB3	8	87670433	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1316127	87670433	58693589	500	144999											
RUNX1T1	862	broad.mit.edu	37	chr8	93003909	93003909	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtccctgtggctggggtGtcgataggagtccctgtagt	17	8	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93003909	A	A	93003909	3	1	179	1	0	0	0	0	1	0	0	0	13858	1377	48	4	889	4	RUNX1T1	8	93003909	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	5333476	93003909	53360113	501	145000											
RUNX1T1	862	broad.mit.edu	37	chr8	93023209	93023209	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtttaaaatactttacaGaccagtgaactgtgcaatac	7	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93023209	T	T	93023209	1	4	179	0	1	0	0	0	0	0	0	0	13858	957	33	3		3	RUNX1T1	8	93023209	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	19300	93023209	53340813	502	145001											
TMEM67	91147	broad.mit.edu	37	chr8	94807498	94807498	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcaggtggtctttataGctggatcatatggggatatg	15	4	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94807498	C	C	94807498	1	2	179	0	1	0	0	0	0	0	0	0	16319	986	34	4		4	TMEM67	8	94807498	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1784289	94807498	51556524	503	145002											
TMEM67	91147	broad.mit.edu	37	chr8	94822191	94822191	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgcttgtagatatttttCtttttttctttttttttttt	4	3	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94822191	T	T	94822191	1	4	179	0	1	0	0	0	0	0	0	0	16319	928	32	4		4	TMEM67	8	94822191	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	14693	94822191	51541831	504	145003											
VPS13B	157680	broad.mit.edu	37	chr8	100865784	100865784	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagctgagcttctgagactCacactggacaacatttttct	7	11	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100865784	T	T	100865784	2	4	179	1	0	0	0	0	0	0	0	1	17317	813	29	4		4	VPS13B	8	100865784	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	6043593	100865784	45498238	505	145004											
RGS22	26166	broad.mit.edu	37	chr8	100974798	100974798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagttggggggcagaataGggtggaggggtcggtcctca	19	6	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100974798	T	T	100974798	1	4	179	0	1	0	0	0	0	0	0	0	13414	1015	35	2		2	RGS22	8	100974798	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	109014	100974798	45389224	506	145005											
NCALD	83988	broad.mit.edu	37	chr8	102884714	102884714	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttatactttccttggTgggtaagatgcccttcttgt	8	8	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102884714	A	A	102884714	1	1	179	0	1	0	0	0	0	0	0	0	10296	1711	59	5		5	NCALD	8	102884714	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1909916	102884714	43479308	507	145006											
RIMS2	9699	broad.mit.edu	37	chr8	104924506	104924506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttagtagtgtatttttcCattttcaatagtttgtgaag	7	3	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104924506	A	A	104924506	1	1	179	0	1	0	0	0	0	0	0	0	13479	609	21	2		2	RIMS2	8	104924506	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2039792	104924506	41439516	508	145007											
RIMS2	9699	broad.mit.edu	37	chr8	105105868	105105868	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaggaggaaacaagaaaaTcaggtaaggggatttcaaca	11	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105105868	C	C	105105868	3	2	179	1	0	0	0	0	1	0	0	0	13479	1450	50	5		5	RIMS2	8	105105868	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	181362	105105868	41258154	509	145008											
PKHD1L1	93035	broad.mit.edu	37	chr8	110445490	110445490	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctaattgttcttctctaaGataaagtggaatcaaagggc	9	6	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110445490	A	A	110445490	1	1	179	0	1	0	0	0	0	0	0	0	12067	957	33	4		4	PKHD1L1	8	110445490	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	5339622	110445490	35918532	510	145009											
CSMD3	114788	broad.mit.edu	37	chr8	113237069	113237069	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccttccactgactttgcGttggtgtcatacatgggatt	9	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113237069	T	T	113237069	3	4	179	1	0	0	0	0	1	0	0	0	3980	1136	40	3	72	3	CSMD3	8	113237069	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2791579	113237069	33126953	511	145010											
CSMD3	114788	broad.mit.edu	37	chr8	113420573	113420573	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaagtgaaatcccttaGctgttattggtccaactgaa	7	8	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113420573	T	T	113420573	3	4	179	1	0	0	0	0	1	0	0	0	3980	971	34	3	5696	3	CSMD3	8	113420573	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	183504	113420573	32943449	512	145011											
CSMD3	114788	broad.mit.edu	37	chr8	113504807	113504807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaccttgaagaacataaCcagcatcacagtaataggtg	7	8	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113504807	A	A	113504807	3	1	179	1	0	0	0	0	1	0	0	0	3980	507	18	3	6098	3	CSMD3	8	113504807	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	84234	113504807	32859215	513	145012											
CSMD3	114788	broad.mit.edu	37	chr8	113988360	113988360	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccagtggaggtagtgtGggtcaatgtagaagaacctg	14	7	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113988360	C	C	113988360	3	2	179	1	0	0	0	0	1	0	0	0	3980	1348	47	4	10335	4	CSMD3	8	113988360	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	483553	113988360	32375662	514	145013											
CSMD3	114788	broad.mit.edu	37	chr8	114290908	114290908	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agatttggtacttgtcactgGaggtggcagatggaatcctg	14	6	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114290908	C	C	114290908	3	2	179	1	0	0	0	0	1	0	0	0	3980	1174	41	4	10972	4	CSMD3	8	114290908	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	302548	114290908	32073114	515	145014											
SAMD12	401474	broad.mit.edu	37	chr8	119593184	119593184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaccacataaagaaggtGtccatgacagaaaatattca	6	8	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119593184	T	T	119593184	1	4	179	0	1	0	0	0	0	0	0	0	13928	1392	48	3		3	SAMD12	8	119593184	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	5302276	119593184	26770838	516	145015											
ADCY8	114	broad.mit.edu	37	chr8	131848553	131848553	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttgaggttgtcataacgcAgaaagaggcctgcgtagacg	15	7	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131848553	G	G	131848553	3	3	179	1	0	0	0	0	1	0	0	0	300	188	7	5	1138	5	ADCY8	8	131848553	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	12255369	131848553	14515469	517	145016											
EFR3A	23167	broad.mit.edu	37	chr8	133022971	133022971	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattcgcagatagtagataGaatactcggtgaaatgaaca	9	5	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133022971	C	C	133022971	1	2	179	0	1	0	0	0	0	0	0	0	4998	957	33	4		4	EFR3A	8	133022971	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1174418	133022971	13341051	518	145017											
FAM135B	51059	broad.mit.edu	37	chr8	139263227	139263227	+	Silent	SNP	G	T	T													aggccaagcgttcggctgctGaccatcggtgccccagccac							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139263227	T	T	139263227	2	4	179	1	0	0	0	0	0	0	0	1	5495	1277	45	3		3	FAM135B	8	139263227	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	6240256	139263227	7100795	519	145018	622	2									
FAM135B	51059	broad.mit.edu	37	chr8	139263230	139263230	+	Missense_Mutation	SNP	C	G	G													ccaagcgttcggctgctgacCatcggtgccccagccacatc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139263230	G	G	139263230	3	3	179	1	0	0	0	0	1	0	0	0	5495	594	21	4	3884	4	FAM135B	8	139263230	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3	139263230	7100792	520	145019	622	2									
COL22A1	169044	broad.mit.edu	37	chr8	139749823	139749823	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtcacctttcttcccctGagtgtaaaagaagaagctaa	7	10	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139749823	A	A	139749823	1	1	179	0	1	0	0	0	0	0	0	0	3713	1305	45	4		4	COL22A1	8	139749823	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	486593	139749823	6614199	521	145020											
LYNX1	66004	broad.mit.edu	37	chr8	143846267	143846267	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagacgccccaggtacatgaAgcatacgggccctcctgggg	13	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143846267	T	T	143846267	1	4	179	0	1	0	0	0	0	0	0	0	9196	87	3	5		5	LYNX1	8	143846267	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	4096444	143846267	2517755	522	145021											
CYP11B1	1584	broad.mit.edu	37	chr8	143957012	143957012	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggaagagcaggtgcagggGaatgggctgctgggtgacgc	21	6	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143957012	C	C	143957012	1	2	179	0	1	0	0	0	0	0	0	0	4178	1189	41	4		4	CYP11B1	8	143957012	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	110745	143957012	2407010	523	145022											
OPLAH	26873	broad.mit.edu	37	chr8	145108315	145108315	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctggatggacagtgtcatCactgagcccctggccaaccc	11	15	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145108315	T	T	145108315	1	4	179	0	1	0	0	0	0	0	0	0	10970	841	29	4		4	OPLAH	8	145108315	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1151303	145108315	1255707	524	145023											
CBWD1	55871	broad.mit.edu	37	chr9	123110	123110	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagaaaaatgaaagtagaCaaagatgatttgtactaaaa	7	2	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123110	T	T	123110	1	4	179	0	1	0	0	0	0	0	0	0	2738	493	17	4		4	CBWD1	9	123110	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08		123110	141090321	525	145024											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5522387	5522387	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttctccaggaaatcaaccTataacttctcctcccagctc	3	16	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5522387	A	A	5522387	1	1	179	0	1	0	0	0	0	0	0	0	11712	1537	53	5		5	PDCD1LG2	9	5522387	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	5399277	5522387	135691044	526	145025											
KIAA2026	158358	broad.mit.edu	37	chr9	5968771	5968771	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attctggggcctgaaagggtCtctgtttataaatccgtaca	10	8	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5968771	G	G	5968771	3	3	179	1	0	0	0	0	1	0	0	0	8340	913	32	4	4875	4	KIAA2026	9	5968771	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	446384	5968771	135244660	527	145026											
GLDC	2731	broad.mit.edu	37	chr9	6602161	6602161	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccgaatgtgttgctccCtggtttgaagagcaagacga	11	10	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6602161	T	T	6602161	3	4	179	1	0	0	0	0	1	0	0	0	6497	681	24	4	2031	4	GLDC	9	6602161	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	633390	6602161	134611270	528	145027											
NFIB	4781	broad.mit.edu	37	chr9	14146719	14146719	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgccatgttcgacttccAgcagctggtgaacttggaga	12	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14146719	T	T	14146719	2	4	179	1	0	0	0	0	0	0	0	1	10466	175	7	5		5	NFIB	9	14146719	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	7544558	14146719	127066712	529	145028											
CER1	9350	broad.mit.edu	37	chr9	14720083	14720083	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaggtaatagtgggataGctcttcaagctgaaactcct	9	8	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14720083	C	C	14720083	1	2	179	0	1	0	0	0	0	0	0	0	3295	986	34	4		4	CER1	9	14720083	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	573364	14720083	126493348	530	145029											
C9orf93	203238	broad.mit.edu	37	chr9	15721814	15721814	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagcttctctgttgtccttGagagattgaggcgtaccttg	11	10	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15721814	T	T	15721814	4	4	179	1	0	0	0	0	0	1	0	0	2532	1291	45	3	1408	3	C9orf93	9	15721814	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1001731	15721814	125491617	531	145030											
DNAI1	27019	broad.mit.edu	37	chr9	34493421	34493421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtctgggaggggttcaCagatacttaaatcagggact	14	7	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34493421	A	A	34493421	1	1	179	0	1	0	0	0	0	0	0	0	4649	493	17	3		3	DNAI1	9	34493421	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	18771607	34493421	106720010	532	145031											
C9orf131	138724	broad.mit.edu	37	chr9	35045018	35045018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaaactgcggcagagcCctgcctccagagcccctggc	12	15	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35045018	A	A	35045018	3	1	179	1	0	0	0	0	1	0	0	0	2483	623	22	2	2414	2	C9orf131	9	35045018	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	551597	35045018	106168413	533	145032											
MELK	9833	broad.mit.edu	37	chr9	36657154	36657154	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttctcagaatgtgtctcTgtcgttaagtgacgcgtgac	10	9	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36657154	C	C	36657154	1	2	179	0	1	0	0	0	0	0	0	0	9563	1595	55	5		5	MELK	9	36657154	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1612136	36657154	104556277	534	145033											
CNTNAP3	79937	broad.mit.edu	37	chr9	39171152	39171152	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtatatgggaaggtatgtcTgcagaaatatgcatttcata	10	4	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39171152	A	A	39171152	1	1	179	0	1	0	0	0	0	0	0	0	3680	1595	55	5		5	CNTNAP3	9	39171152	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2513998	39171152	102042279	535	145034											
PCSK5	5125	broad.mit.edu	37	chr9	78506309	78506309	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaacgaactacaggctagCccagccctcggccctgaagc	11	15	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78506309	T	T	78506309	1	4	179	0	1	0	0	0	0	0	0	0	11697	754	26	4		4	PCSK5	9	78506309	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	39335157	78506309	62707122	536	145035											
PRUNE2	158471	broad.mit.edu	37	chr9	79325909	79325909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaatggtagccagtccgctGtctgggctaacaaggtctac	11	11	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79325909	C	C	79325909	3	2	179	1	0	0	0	0	1	0	0	0	12747	1368	48	4	8033	4	PRUNE2	9	79325909	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	819600	79325909	61887522	537	145036											
VPS13A	23230	broad.mit.edu	37	chr9	79933380	79933380	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgaacattgattctaTttttatagttcttgaggctg	7	4	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79933380	G	G	79933380	3	3	179	1	0	0	0	0	1	0	0	0	17316	1493	52	5	5348	5	VPS13A	9	79933380	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	607471	79933380	61280051	538	145037											
FAM120AOS	158293	broad.mit.edu	37	chr9	96214681	96214681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacgtcaaggtgaggccgGggatccgggcgggccgggga	20	11	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96214681	T	T	96214681	3	4	179	1	0	0	0	0	1	0	0	0	5462	1232	43	2	471	2	FAM120AOS	9	96214681	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	16281301	96214681	44998750	539	145038											
SMC2	10592	broad.mit.edu	37	chr9	106864511	106864511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatcgataatatactctGtgaaaaacgtactaaattat	5	5	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106864511	T	T	106864511	1	4	179	0	1	0	0	0	0	0	0	0	14897	1392	48	3		3	SMC2	9	106864511	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	10649830	106864511	34348920	540	145039											
OR13C9	286362	broad.mit.edu	37	chr9	107379868	107379868	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagcagtggcatcaatgtGaacaatattgtggccacaag	11	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107379868	A	A	107379868	2	1	179	1	0	0	0	0	0	0	0	1	11033	1281	45	4		4	OR13C9	9	107379868	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	515357	107379868	33833563	541	145040											
RGS3	5998	broad.mit.edu	37	chr9	116224430	116224430	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagaagagatgagtggactCaaacttctccagccaggaag	11	10	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116224430	G	G	116224430	3	3	179	1	0	0	0	0	1	0	0	0	13415	827	29	4	374	4	RGS3	9	116224430	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	8844562	116224430	24989001	542	145041											
ASTN2	23245	broad.mit.edu	37	chr9	119770302	119770302	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatggttctttaggtagaGggagcacaatgcctctttca	10	9	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119770302	A	A	119770302	1	1	179	0	1	0	0	0	0	0	0	0	1069	1015	35	4		4	ASTN2	9	119770302	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3545872	119770302	21443129	543	145042											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123184882	123184882	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcaggaaacaaacagaatGggaaggagccaaaatatttt	10	5	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123184882	A	A	123184882	1	1	179	0	1	0	0	0	0	0	0	0	3176	1363	47	4		4	CDK5RAP2	9	123184882	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3414580	123184882	18028549	544	145043											
OR1N1	138883	broad.mit.edu	37	chr9	125288811	125288811	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaggacacaggtaggcactGaagagggtcccatagaacac	14	9	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125288811	A	A	125288811	2	1	179	1	0	0	0	0	0	0	0	1	11063	1281	45	4		4	OR1N1	9	125288811	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2103929	125288811	15924620	545	145044											
LRSAM1	90678	broad.mit.edu	37	chr9	130247911	130247911	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggtaaccaggtgaggcctCaaggcctgttcctcagttcc	11	12	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130247911	T	T	130247911	1	4	179	0	1	0	0	0	0	0	0	0	9130	841	29	4		4	LRSAM1	9	130247911	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4959100	130247911	10965520	546	145045											
CIZ1	25792	broad.mit.edu	37	chr9	130943118	130943118	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctttcagaaactatgttGacatccaatacccaccccta	3	14	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130943118	A	A	130943118	1	1	179	0	1	0	0	0	0	0	0	0	3472	1305	45	4		4	CIZ1	9	130943118	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	695207	130943118	10270313	547	145046											
ODF2	4957	broad.mit.edu	37	chr9	131258434	131258434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaggttagaggcacttGgtcccatctctgtcctcttc	11	11	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131258434	T	T	131258434	1	4	179	0	1	0	0	0	0	0	0	0	10922	1363	47	2		2	ODF2	9	131258434	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	315316	131258434	9954997	548	145047											
PKN3	29941	broad.mit.edu	37	chr9	131477031	131477031	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggcaggcctgaagggaaaGagagaaggaagcccagccct	16	9	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131477031	C	C	131477031	1	2	179	0	1	0	0	0	0	0	0	0	12076	957	33	4		4	PKN3	9	131477031	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	218597	131477031	9736400	549	145048											
PPP2R4	5524	broad.mit.edu	37	chr9	131909771	131909771	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagccgaagagccacccagGccacagttcctgtgcctgcc	10	17	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131909771	T	T	131909771	1	4	179	0	1	0	0	0	0	0	0	0	12492	1218	42	3		3	PPP2R4	9	131909771	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	432740	131909771	9303660	550	145049											
NTNG2	84628	broad.mit.edu	37	chr9	135114645	135114645	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcggcagagctggatgatgaGaacgtctgcattggtgagag	16	6	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135114645	T	T	135114645	3	4	179	1	0	0	0	0	1	0	0	0	10800	933	33	3	1227	3	NTNG2	9	135114645	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3204874	135114645	6098786	551	145050											
CEL	1056	broad.mit.edu	37	chr9	135942366	135942366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggctgggcggggtggGggctgtccacatttccgttc	19	10	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135942366	T	T	135942366	1	4	179	0	1	0	0	0	0	0	0	0	3239	1247	43	2		2	CEL	9	135942366	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	827721	135942366	5271065	552	145051											
COL5A1	1289	broad.mit.edu	37	chr9	137582640	137582640	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtcctggggctcttctgAgtgcccaggattcacagtgg	14	11	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137582640	G	G	137582640	1	3	179	0	1	0	0	0	0	0	0	0	3728	319	11	5		5	COL5A1	9	137582640	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	1640274	137582640	3630791	553	145052											
COL5A1	1289	broad.mit.edu	37	chr9	137713815	137713815	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagccacaggaggctgctGaggggccaaagggcataccg	16	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137713815	A	A	137713815	1	1	179	0	1	0	0	0	0	0	0	0	3728	1305	45	4		4	COL5A1	9	137713815	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	131175	137713815	3499616	554	145053											
CAMSAP1	157922	broad.mit.edu	37	chr9	138712840	138712840	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctcagaggctcctccaCggggacgctctcttttcccg	10	17	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138712840	T	T	138712840	3	4	179	1	0	0	0	0	1	0	0	0	2637	536	19	4	1169	4	CAMSAP1	9	138712840	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	999025	138712840	2500591	555	145054											
QSOX2	169714	broad.mit.edu	37	chr9	139108615	139108615	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctacagacccaaacccgggCccgcccccaccgcggggggc	13	20	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139108615	T	T	139108615	1	4	179	0	1	0	0	0	0	0	0	0	12992	754	26	4		4	QSOX2	9	139108615	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	395775	139108615	2104816	556	145055											
NDOR1	27158	broad.mit.edu	37	chr9	140108925	140108925	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccgtgggtctggggttcgGaggaggctgggccgggctgc	23	9	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140108925	A	A	140108925	1	1	179	0	1	0	0	0	0	0	0	0	10344	1189	41	4		4	NDOR1	9	140108925	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1000310	140108925	1104506	557	145056											
COBRA1	25920	broad.mit.edu	37	chr9	140157505	140157505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtggtgcagcggctgaCgcggatggtggggaagaacg	21	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140157505	A	A	140157505	3	1	179	1	0	0	0	0	1	0	0	0	3687	536	19	3	632	3	COBRA1	9	140157505	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	48580	140157505	1055926	558	145057											
TUBB8	347688	broad.mit.edu	37	chr10	94648	94648	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatccacgagcacagcgcGgggcacgtacctgccacctg	12	16	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94648	A	A	94648	3	1	179	1	0	0	0	0	1	0	0	0	16887	1116	39	4	1158	4	TUBB8	10	94648	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08		94648	135440099	559	145058											
DIP2C	22982	broad.mit.edu	37	chr10	410293	410293	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgaccggaaaccatatgcttGatttgcagaacgccactgac	9	12	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	410293	A	A	410293	1	1	179	0	1	0	0	0	0	0	0	0	4569	1305	45	4		4	DIP2C	10	410293	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	315645	410293	135124454	560	145059											
SFMBT2	57713	broad.mit.edu	37	chr10	7212873	7212873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacatcaaacaatcgacaCgcggcaaccaccgtacctgc	7	16	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7212873	A	A	7212873	1	1	179	0	1	0	0	0	0	0	0	0	14271	551	19	3		3	SFMBT2	10	7212873	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	6802580	7212873	128321874	561	145060											
ITIH5	80760	broad.mit.edu	37	chr10	7605410	7605410	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacctcgtgctgaactccaActtcagagctatcagtggca	8	12	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7605410	G	G	7605410	1	3	179	0	1	0	0	0	0	0	0	0	7977	58	2	5		5	ITIH5	10	7605410	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	392537	7605410	127929337	562	145061											
C10orf47	254427	broad.mit.edu	37	chr10	11894129	11894129	+	Frame_Shift_Del	DEL	C	-	-													tgacatgaactcagacacgtCccccagctgcaggctccgag							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11894129	-	-	11894129	7	5	179	1	0	1	0	1	0	0	0	0	1616	855	30	0	55	0	C10orf47	10	11894129	Frame_Shift_Del	DEL	C	TCGA-55-5899-01A-11D-1625-08	4288719	11894129	123640618	563	145062											
OLAH	55301	broad.mit.edu	37	chr10	15103815	15103815	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgatgaagttgtttgtgctCtgcagccagtcatccaggat	11	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15103815	G	G	15103815	3	3	179	1	0	0	0	0	1	0	0	0	10946	912	32	4	429	4	OLAH	10	15103815	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3209686	15103815	120430932	564	145063											
PIP4K2A	5305	broad.mit.edu	37	chr10	22828882	22828882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagaaagagagaaggaaaCaaaatggagatactcacgcc	12	6	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22828882	A	A	22828882	1	1	179	0	1	0	0	0	0	0	0	0	12031	493	17	3		3	PIP4K2A	10	22828882	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	7725067	22828882	112705865	565	145064											
THNSL1	79896	broad.mit.edu	37	chr10	25312405	25312405	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aactaggttgttgtgtcataGatgtggatgatgatatcctt	11	4	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25312405	C	C	25312405	3	2	179	1	0	0	0	0	1	0	0	0	15985	942	33	4	255	4	THNSL1	10	25312405	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2483523	25312405	110222342	566	145065											
RAB18	22931	broad.mit.edu	37	chr10	27815671	27815671	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgggcatttgataatagtGacttttctgttttctggttt	9	4	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27815671	A	A	27815671	1	1	179	0	1	0	0	0	0	0	0	0	13011	1305	45	4		4	RAB18	10	27815671	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2503266	27815671	107719076	567	145066											
LYZL1	84569	broad.mit.edu	37	chr10	29599112	29599112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagacacaaggaatgaaCtattggtaagagtgttttct	10	4	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599112	A	A	29599112	3	1	179	1	0	0	0	0	1	0	0	0	9219	564	20	3	524	3	LYZL1	10	29599112	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1783441	29599112	105935635	568	145067											
RET	5979	broad.mit.edu	37	chr10	43601846	43601846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgtggtggccacgctgcGtgtcttcgatgcagacgtgg	15	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43601846	T	T	43601846	3	4	179	1	0	0	0	0	1	0	0	0	13343	1145	40	3	908	3	RET	10	43601846	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	14002734	43601846	91932901	569	145068											
OGDHL	55753	broad.mit.edu	37	chr10	50960566	50960566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtagaaaggaggccctGtgggctgctccccgagctcc	14	13	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50960566	T	T	50960566	1	4	179	0	1	0	0	0	0	0	0	0	10935	1392	48	3		3	OGDHL	10	50960566	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	7358720	50960566	84574181	570	145069											
PCDH15	65217	broad.mit.edu	37	chr10	55570270	55570271	+	Intron	INS	-	C	C													tcacgtagggttaaacaataINStttttcttggaatattatct							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55570271	C	C	55570270	6	5	179	0	1	1	1	0	0	0	0	0	11605	464	16	0		0	PCDH15	10	55570270	Intron	INS	-	TCGA-55-5899-01A-11D-1625-08	4609704	55570270	79964477	571	145070											
PCDH15	65217	broad.mit.edu	37	chr10	56077208	56077208	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttgggcacggtcctgttaGggagaaaaacaaacaacagg	12	7	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56077208	C	C	56077208	1	2	179	0	1	0	0	0	0	0	0	0	11605	1015	35	4		4	PCDH15	10	56077208	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	506938	56077208	79457539	572	145071											
POLR3A	11128	broad.mit.edu	37	chr10	79777351	79777351	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accagatgagccataatgctCaatttgtgcagcgagggctg	12	9	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79777351	G	G	79777351	3	3	179	1	0	0	0	0	1	0	0	0	12323	825	29	4	2847	4	POLR3A	10	79777351	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	23700143	79777351	55757396	573	145072											
MAT1A	4143	broad.mit.edu	37	chr10	82039923	82039923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctggggtaattcagctGctcacctgagtcttagagtc	10	11	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82039923	T	T	82039923	1	4	179	0	1	0	0	0	0	0	0	0	9421	1334	46	3		3	MAT1A	10	82039923	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2262572	82039923	53494824	574	145073											
ANKRD22	118932	broad.mit.edu	37	chr10	90582810	90582810	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atatacagttatttccaataGagtgcccaagatctcgtacg	7	9	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90582810	A	A	90582810	1	1	179	0	1	0	0	0	0	0	0	0	651	957	33	4		4	ANKRD22	10	90582810	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	8542887	90582810	44951937	575	145074											
RPP30	10556	broad.mit.edu	37	chr10	92654489	92654489	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaaaatgaagtaggccAgtgcatgcttatctctgaca	10	8	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92654489	G	G	92654489	1	3	179	0	1	0	0	0	0	0	0	0	13723	203	7	5		5	RPP30	10	92654489	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	2071679	92654489	42880258	576	145075											
TNKS2	80351	broad.mit.edu	37	chr10	93609410	93609410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaactcaaggaaaatttGgaacatacttgaaatgagct	9	5	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93609410	T	T	93609410	1	4	179	0	1	0	0	0	0	0	0	0	16444	1363	47	2		2	TNKS2	10	93609410	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	954921	93609410	41925337	577	145076											
MYOF	26509	broad.mit.edu	37	chr10	95116584	95116584	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatattcccagccctcttGgtcttgcaattcctccatgg	7	14	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95116584	A	A	95116584	4	1	179	1	0	0	0	0	0	1	0	0	10183	1357	47	4	3143	4	MYOF	10	95116584	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1507174	95116584	40418163	578	145077											
MYOF	26509	broad.mit.edu	37	chr10	95147444	95147444	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctgttgtagaaacatccaGatgagggcctcattgtgagt	13	7	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95147444	A	A	95147444	1	1	179	0	1	0	0	0	0	0	0	0	10183	957	33	4		4	MYOF	10	95147444	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	30860	95147444	40387303	579	145078											
SLIT1	6585	broad.mit.edu	37	chr10	98762557	98762557	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctggggtggcattgggcTggcagatgccatgcaggcag	18	10	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98762557	A	A	98762557	3	1	179	1	0	0	0	0	1	0	0	0	14853	1580	55	5	558	5	SLIT1	10	98762557	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	3615113	98762557	36772190	580	145079											
SEC31B	25956	broad.mit.edu	37	chr10	102256930	102256931	+	Missense_Mutation	DNP	CC	AA	AA													caaagcctggtggcattttgCccagcactccaccagccgct							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	102256931	AA	AA	102256930	3	1	179	1	0	0	0	0	1	0	0	0	14112	739	26	3	1481	3	SEC31B	10	102256930	Missense_Mutation	DNP	CC	TCGA-55-5899-01A-11D-1625-08	3494373	102256930	33277817	581	145080											
SEMA4G	57715	broad.mit.edu	37	chr10	102739888	102739888	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccacgccagtgtatcacaGattcattgcgcagccaaggc	9	15	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102739888	A	A	102739888	3	1	179	1	0	0	0	0	1	0	0	0	14149	942	33	4	1176	4	SEMA4G	10	102739888	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	482958	102739888	32794859	582	145081											
PDZD7	79955	broad.mit.edu	37	chr10	102783878	102783878	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcattgtgggcacagaggGcccctgggttccccaacttg	13	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102783878	A	A	102783878	1	1	179	0	1	0	0	0	0	0	0	0	11798	1218	42	4		4	PDZD7	10	102783878	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	43990	102783878	32750869	583	145082											
SORCS3	22986	broad.mit.edu	37	chr10	106917109	106917109	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagaagctgtgtcgaggGctttgtttcgtcaaagggtc	14	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106917109	A	A	106917109	1	1	179	0	1	0	0	0	0	0	0	0	15046	1218	42	4		4	SORCS3	10	106917109	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4133231	106917109	28617638	584	145083											
VWA2	340706	broad.mit.edu	37	chr10	116008550	116008550	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtgtttattggtggtgggGaagtactggcgtgttgagta	17	2	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116008550	A	A	116008550	1	1	179	0	1	0	0	0	0	0	0	0	17366	1189	41	4		4	VWA2	10	116008550	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	9091441	116008550	19526197	585	145084											
ATRNL1	26033	broad.mit.edu	37	chr10	117704234	117704234	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcagatagtaaagataagActtctggagtccggaatcga	10	7	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117704234	T	T	117704234	3	4	179	1	0	0	0	0	1	0	0	0	1211	275	10	5	4198	5	ATRNL1	10	117704234	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	1695684	117704234	17830513	586	145085											
WDR11	55717	broad.mit.edu	37	chr10	122630692	122630692	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaaatcagggcaaagtgcAattgctggggaagaacatcc	11	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122630692	T	T	122630692	2	4	179	1	0	0	0	0	0	0	0	1	17400	117	5	5		5	WDR11	10	122630692	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	4926458	122630692	12904055	587	145086											
MUC5B	727897	broad.mit.edu	37	chr11	1217678	1217678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacccctcctactgctaCgggaatgacagcgccagcct	9	16	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1217678	A	A	1217678	1	1	179	0	1	0	0	0	0	0	0	0	10073	551	19	3		3	MUC5B	11	1217678	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08		1217678	133788838	588	145087											
KRTAP5-1	387264	broad.mit.edu	37	chr11	1605902	1605902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggagccacaaccccccttgGatcccccacaagaaccgcag	8	19	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1605902	T	T	1605902	3	4	179	1	0	0	0	0	1	0	0	0	8630	1174	41	3	262	3	KRTAP5-1	11	1605902	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	388224	1605902	133400614	589	145088											
TNNT3	7140	broad.mit.edu	37	chr11	1955021	1955021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgacagccactttgaagCccggaagaaggaggaggagg	15	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1955021	A	A	1955021	3	1	179	1	0	0	0	0	1	0	0	0	16455	739	26	3	317	3	TNNT3	11	1955021	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	349119	1955021	133051495	590	145089											
KCNQ1	3784	broad.mit.edu	37	chr11	2591854	2591855	+	Intron	DNP	GC	AG	AG													gagcgtcccactctgtccctGcaggagatcgtgctggtggt							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	2591855	AG	AG	2591854	1	1	179	0	1	0	0	0	0	0	0	0	8152	1334	46	4		4	KCNQ1	11	2591854	Intron	DNP	GC	TCGA-55-5899-01A-11D-1625-08	636833	2591854	132414662	591	145090											
OR51G2	81282	broad.mit.edu	37	chr11	4936466	4936466	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatcctgccaatgactgtgTtggtgagaatggaaacatag	11	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4936466	A	A	4936466	3	1	179	1	0	0	0	0	1	0	0	0	11193	1725	60	5	520	5	OR51G2	11	4936466	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	2344612	4936466	130070050	592	145091											
OR51A4	401666	broad.mit.edu	37	chr11	4967877	4967877	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccaggagcatgctcttaaAggagaatactatccctattt	7	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4967877	T	T	4967877	3	4	179	1	0	0	0	0	1	0	0	0	11181	72	3	5	489	5	OR51A4	11	4967877	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	31411	4967877	130038639	593	145092											
OR52B6	340980	broad.mit.edu	37	chr11	5602527	5602527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggccatggcctttgacCgctatgtggccatctgctcc	11	14	1	1	rs114791744	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5602527	A	A	5602527	3	1	179	1	0	0	0	0	1	0	0	0	11207	652	23	1	423	1	OR52B6	11	5602527	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	634650	5602527	129403989	594	145093											
OR52E4	390081	broad.mit.edu	37	chr11	5906247	5906247	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaaaggccttcaatacctGtggttctcatgtctgtgtta	8	9	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5906247	A	A	5906247	3	1	179	1	0	0	0	0	1	0	0	0	11210	1377	48	4	727	4	OR52E4	11	5906247	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	303720	5906247	129100269	595	145094											
CNGA4	1262	broad.mit.edu	37	chr11	6265580	6265580	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgagggtgagcctgaggagGgaacttccaaagatgaagag	16	6	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6265580	T	T	6265580	4	4	179	1	0	0	0	0	0	1	0	0	3631	1233	43	2	1691	2	CNGA4	11	6265580	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	359333	6265580	128740936	596	145095											
CCKBR	887	broad.mit.edu	37	chr11	6292013	6292013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgacagccaaagcagggtccGaaaccaaggcgggctgccag	14	13	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6292013	C	C	6292013	3	2	179	1	0	0	0	0	1	0	0	0	2909	1058	37	4	805	4	CCKBR	11	6292013	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	26433	6292013	128714503	597	145096											
OR2D3	120775	broad.mit.edu	37	chr11	6943214	6943214	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgggagaaagtgcttctctCataggcagtgacctctgagt	12	8	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6943214	A	A	6943214	3	1	179	1	0	0	0	0	1	0	0	0	11089	826	29	3	984	3	OR2D3	11	6943214	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	651201	6943214	128063302	598	145097											
NLRP14	338323	broad.mit.edu	37	chr11	7059877	7059877	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctgctattgtatttggaGgagctaaacaaagaggaatt	13	4	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7059877	A	A	7059877	2	1	179	1	0	0	0	0	0	0	0	1	10571	991	35	4		4	NLRP14	11	7059877	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	116663	7059877	127946639	599	145098											
NLRP14	338323	broad.mit.edu	37	chr11	7083652	7083652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgaggagcctggaccttGggaacaacgatttgcaggat	13	9	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7083652	T	T	7083652	3	4	179	1	0	0	0	0	1	0	0	0	10571	1348	47	2	2927	2	NLRP14	11	7083652	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	23775	7083652	127922864	600	145099											
PPFIBP2	8495	broad.mit.edu	37	chr11	7539111	7539111	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgctcatgaagggatGgggggcggtccctgcagggg	20	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7539111	T	T	7539111	1	4	179	0	1	0	0	0	0	0	0	0	12410	1363	47	2		2	PPFIBP2	11	7539111	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	455459	7539111	127467405	601	145100											
GALNTL4	374378	broad.mit.edu	37	chr11	11314662	11314662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctgttgacgtccaccaGgcatcggttgtcatcatcat	10	13	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11314662	T	T	11314662	3	4	179	1	0	0	0	0	1	0	0	0	6285	991	35	2	240	2	GALNTL4	11	11314662	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3775551	11314662	123691854	602	145101											
MICAL2	9645	broad.mit.edu	37	chr11	12247751	12247751	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatgaagatgatgctgtGgagaacaaccagctcgcatt	11	7	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12247751	T	T	12247751	2	4	179	1	0	0	0	0	0	0	0	1	9663	1335	47	2		2	MICAL2	11	12247751	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	933089	12247751	122758765	603	145102											
RRAS2	22800	broad.mit.edu	37	chr11	14303291	14303291	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattccaacagttatgtttaTggtacattattaacaactgg	6	6	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14303291	C	C	14303291	1	2	179	0	1	0	0	0	0	0	0	0	13788	1479	51	5		5	RRAS2	11	14303291	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2055540	14303291	120703225	604	145103											
INSC	387755	broad.mit.edu	37	chr11	15199882	15199882	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcaggtgccttcaggtTgagaatgagcatgtcctgaa	11	9	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15199882	A	A	15199882	2	1	179	1	0	0	0	0	0	0	0	1	7834	1799	63	5		5	INSC	11	15199882	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	896591	15199882	119806634	605	145104											
NAV2	89797	broad.mit.edu	37	chr11	20073025	20073025	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttttggatgacggctccCcttgcaccctctcgttctca	7	16	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20073025	T	T	20073025	1	4	179	0	1	0	0	0	0	0	0	0	10278	638	22	4		4	NAV2	11	20073025	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4873143	20073025	114933491	606	145105											
CCDC73	493860	broad.mit.edu	37	chr11	32657332	32657332	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagtttctttaagggatgaTaattcatttttaatcttatt	6	3	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32657332	A	A	32657332	3	1	179	1	0	0	0	0	1	0	0	0	2874	1403	49	5	2164	5	CCDC73	11	32657332	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	12584307	32657332	102349184	607	145106											
CCDC73	493860	broad.mit.edu	37	chr11	32675501	32675501	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttagaatatttactggcttCcaaatagcttatgattgctt	6	6	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32675501	T	T	32675501	1	4	179	0	1	0	0	0	0	0	0	0	2874	870	30	4		4	CCDC73	11	32675501	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	18169	32675501	102331015	608	145107											
QSER1	79832	broad.mit.edu	37	chr11	32956717	32956717	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacgaatgcctaacaggActagacggccagggacccag	12	12	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32956717	T	T	32956717	3	4	179	1	0	0	0	0	1	0	0	0	12990	275	10	5	3532	5	QSER1	11	32956717	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	281216	32956717	102049799	609	145108											
C11orf41	25758	broad.mit.edu	37	chr11	33564735	33564735	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgcaactagagacttgctCctctcaagcaaagttcctaa	6	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33564735	A	A	33564735	2	1	179	1	0	0	0	0	0	0	0	1	1652	842	30	3		3	C11orf41	11	33564735	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	608018	33564735	101441781	610	145109											
OR4X1	390113	broad.mit.edu	37	chr11	48286048	48286048	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagtcagtttcttcgtgctGatggcttcctacctgatcat	9	10	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48286048	A	A	48286048	2	1	179	1	0	0	0	0	0	0	0	1	11178	1277	45	4		4	OR4X1	11	48286048	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	14721313	48286048	86720468	611	145110											
FOLH1	2346	broad.mit.edu	37	chr11	49175393	49175393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgcacatatatgtagaaCatacttgcttttgtcaaagt	6	6	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49175393	A	A	49175393	1	1	179	0	1	0	0	0	0	0	0	0	6037	493	17	3		3	FOLH1	11	49175393	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	889345	49175393	85831123	612	145111											
FOLH1	2346	broad.mit.edu	37	chr11	49227738	49227738	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaccaccctgaaaaatacatCcaaaaataggcatgagatac	5	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49227738	G	G	49227738	1	3	179	0	1	0	0	0	0	0	0	0	6037	870	30	4		4	FOLH1	11	49227738	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	52345	49227738	85778778	613	145112											
OR4A15	81328	broad.mit.edu	37	chr11	55135422	55135422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtttgtaggctccgacaCctgagtccaacaccttcaga	8	12	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135422	A	A	55135422	3	1	179	1	0	0	0	0	1	0	0	0	11134	506	18	3	65	3	OR4A15	11	55135422	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	5907684	55135422	79871094	614	145113											
OR5D16	390144	broad.mit.edu	37	chr11	55607017	55607017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcctctactgtgtaCccaactccaaaaactccagg	4	16	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55607017	A	A	55607017	3	1	179	1	0	0	0	0	1	0	0	0	11250	507	18	3	792	3	OR5D16	11	55607017	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	471595	55607017	79399499	615	145114											
OR8K5	219453	broad.mit.edu	37	chr11	55927735	55927735	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggaatctgcagctcaggcCgccttgtgagttccatcaga	13	11	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55927735	G	G	55927735	3	3	179	1	0	0	0	0	1	0	0	0	11339	652	23	4	867	4	OR8K5	11	55927735	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	320718	55927735	79078781	616	145115											
OR5T3	390154	broad.mit.edu	37	chr11	56019896	56019896	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttgataggcaatttagGgctggttgtgttggtcattg	13	5	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56019896	T	T	56019896	3	4	179	1	0	0	0	0	1	0	0	0	11277	1232	43	2	223	2	OR5T3	11	56019896	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	92161	56019896	78986620	617	145116											
OR8J1	219477	broad.mit.edu	37	chr11	56128532	56128532	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaaccattcactggatacTgatgataagatggcttctgt	9	7	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128532	A	A	56128532	2	1	179	1	0	0	0	0	0	0	0	1	11335	1567	55	5		5	OR8J1	11	56128532	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	108636	56128532	78877984	618	145117											
OR10Q1	219960	broad.mit.edu	37	chr11	57996273	57996273	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagaagaacctggaattcAgtggctgtggtgaacgcacg	14	7	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57996273	G	G	57996273	2	3	179	1	0	0	0	0	0	0	0	1	11010	175	7	5		5	OR10Q1	11	57996273	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	1867741	57996273	77010243	619	145118											
MS4A4A	51338	broad.mit.edu	37	chr11	60059639	60059639	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaggaacctgccccaaagTgtcatgtcctcttttgccat	10	12	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60059639	A	A	60059639	1	1	179	0	1	0	0	0	0	0	0	0	9956	1711	59	5		5	MS4A4A	11	60059639	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2063366	60059639	74946877	620	145119											
ASRGL1	80150	broad.mit.edu	37	chr11	62159033	62159033	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caatgacatcggagccgtctCaaccacagggcatggggaaa	12	11	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62159033	T	T	62159033	3	4	179	1	0	0	0	0	1	0	0	0	1064	838	29	4	668	4	ASRGL1	11	62159033	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2099394	62159033	72847483	621	145120											
AHNAK	79026	broad.mit.edu	37	chr11	62293042	62293042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctggcatcttgaacttGggccctttcaactttccctc	6	14	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62293042	T	T	62293042	2	4	179	1	0	0	0	0	0	0	0	1	414	1335	47	2		2	AHNAK	11	62293042	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	134009	62293042	72713474	622	145121											
BSCL2	26580	broad.mit.edu	37	chr11	62459865	62459865	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctgagcccagtgaagtgCgcgtggatgcggaggtaggc	17	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62459865	G	G	62459865	2	3	179	1	0	0	0	0	0	0	0	1	1536	755	27	4		4	BSCL2	11	62459865	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	166823	62459865	72546651	623	145122											
SLC22A6	9356	broad.mit.edu	37	chr11	62747367	62747367	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggattaggtagatgctgactCcaaagccctgcaggtccatg	12	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62747367	G	G	62747367	3	3	179	1	0	0	0	0	1	0	0	0	14572	855	30	4	616	4	SLC22A6	11	62747367	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	287502	62747367	72259149	624	145123											
MARK2	2011	broad.mit.edu	37	chr11	63666005	63666005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagactttcgttcctaggatGctcctggacatgttggagag	13	8	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63666005	T	T	63666005	1	4	179	0	1	0	0	0	0	0	0	0	9405	1334	46	3		3	MARK2	11	63666005	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	918638	63666005	71340511	625	145124											
NRXN2	9379	broad.mit.edu	37	chr11	64415750	64415750	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgcaggtgaagccatccCactgctgcaagcagacgccc	11	15	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64415750	T	T	64415750	4	4	179	1	0	0	0	0	0	1	0	0	10761	595	21	4	2091	4	NRXN2	11	64415750	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	749745	64415750	70590766	626	145125											
NAALADL1	10004	broad.mit.edu	37	chr11	64815849	64815849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgattgatctgcgaggacGccaggtgcctgggaatgggg	17	9	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64815849	T	T	64815849	3	4	179	1	0	0	0	0	1	0	0	0	10223	1087	38	3	1055	3	NAALADL1	11	64815849	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	400099	64815849	70190667	627	145126											
CATSPER1	117144	broad.mit.edu	37	chr11	65788445	65788445	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actggctgttcagggccaaaCtcagctctccagtgctatcc	9	14	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65788445	G	G	65788445	1	3	179	0	1	0	0	0	0	0	0	0	2713	580	20	4		4	CATSPER1	11	65788445	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	972596	65788445	69218071	628	145127											
ACTN3	89	broad.mit.edu	37	chr11	66330219	66330219	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggggacactgggagccctCctggctttagtgctcatggg	16	10	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66330219	T	T	66330219	1	4	179	0	1	0	0	0	0	0	0	0	206	870	30	4		4	ACTN3	11	66330219	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	541774	66330219	68676297	629	145128											
SYT12	91683	broad.mit.edu	37	chr11	66811414	66811414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcctcatcatcctctgCaatagcctgagccccatcat	4	16	5	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66811414	A	A	66811414	1	1	179	0	1	0	0	0	0	0	0	0	15587	725	25	3		3	SYT12	11	66811414	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	481195	66811414	68195102	630	145129											
SSH3	54961	broad.mit.edu	37	chr11	67077349	67077349	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgcagcctggagcaggcccTgcgccacgtgcaggagctcc	14	15	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67077349	A	A	67077349	3	1	179	1	0	0	0	0	1	0	0	0	15304	1580	55	5	1365	5	SSH3	11	67077349	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	265935	67077349	67929167	631	145130											
MTL5	9633	broad.mit.edu	37	chr11	68509921	68509921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgttcctcttccacttacaCgtggatgaaagtacaaaagt	7	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68509921	A	A	68509921	1	1	179	0	1	0	0	0	0	0	0	0	10030	551	19	3		3	MTL5	11	68509921	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1432572	68509921	66496595	632	145131											
CLPB	81570	broad.mit.edu	37	chr11	72070121	72070121	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaccaatctcacctgttttCtagtggcattttaattcact	4	12	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72070121	T	T	72070121	1	4	179	0	1	0	0	0	0	0	0	0	3583	928	32	4		4	CLPB	11	72070121	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3560200	72070121	62936395	633	145132											
ARHGEF17	9828	broad.mit.edu	37	chr11	73067668	73067668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattggcctagcccatggaGtggggccgagggatcactgg	16	11	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73067668	T	T	73067668	1	4	179	0	1	0	0	0	0	0	0	0	902	1044	36	3		3	ARHGEF17	11	73067668	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	997547	73067668	61938848	634	145133											
C2CD3	26005	broad.mit.edu	37	chr11	73748715	73748715	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctggcggaagtacctctGaatctgatcaagctcactca	8	12	6	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73748715	A	A	73748715	4	1	179	1	0	0	0	0	0	1	0	0	2176	1299	45	4	210	4	C2CD3	11	73748715	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	681047	73748715	61257801	635	145134											
SLCO2B1	11309	broad.mit.edu	37	chr11	74911421	74911421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacacaccctccttcatGctcatcctaaggtgaaggtg	7	15	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74911421	T	T	74911421	3	4	179	1	0	0	0	0	1	0	0	0	14841	1319	46	3	1794	3	SLCO2B1	11	74911421	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1162706	74911421	60095095	636	145135											
LRRC32	2615	broad.mit.edu	37	chr11	76372429	76372429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgaagtgctgtgtagaagcCcaggggtgaggccaggatac	16	8	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76372429	A	A	76372429	3	1	179	1	0	0	0	0	1	0	0	0	9074	623	22	2	1784	2	LRRC32	11	76372429	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1461008	76372429	58634087	637	145136											
ODZ4	26011	broad.mit.edu	37	chr11	78431322	78431322	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcacacaggattcttttgCcatacagccatttgaaattg	6	9	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78431322	T	T	78431322	1	4	179	0	1	0	0	0	0	0	0	0	10932	754	26	4		4	ODZ4	11	78431322	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2058893	78431322	56575194	638	145137											
PICALM	8301	broad.mit.edu	37	chr11	85722153	85722153	+	Nonsense_Mutation	SNP	G	A	A													gtcaagaccttctttgcattGgttctttttcatatcaaaat							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85722153	A	A	85722153	4	1	179	1	0	0	0	0	0	1	0	0	11975	1357	47	4	1357	4	PICALM	11	85722153	Nonsense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	7290831	85722153	49284363	639	145138	623	2									
PICALM	8301	broad.mit.edu	37	chr11	85722156	85722156	+	Missense_Mutation	SNP	T	C	C													aagaccttctttgcattggtTctttttcatatcaaaatatt							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85722156	C	C	85722156	3	2	179	1	0	0	0	0	1	0	0	0	11975	1783	62	5	1360	5	PICALM	11	85722156	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	3	85722156	49284360	640	145139	623	2									
TYR	7299	broad.mit.edu	37	chr11	88961178	88961178	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaataacgtgctcattggaTttaaatagagggtgcctatc	9	6	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88961178	A	A	88961178	1	1	179	0	1	0	0	0	0	0	0	0	16939	1508	52	5		5	TYR	11	88961178	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	3239022	88961178	46045338	641	145140											
TRIM49	57093	broad.mit.edu	37	chr11	89537734	89537734	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatagttatattttcttctCttgacagtgttcattaaagt	6	5	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89537734	A	A	89537734	1	1	179	0	1	0	0	0	0	0	0	0	16649	928	32	3		3	TRIM49	11	89537734	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	576556	89537734	45468782	642	145141											
FAT3	120114	broad.mit.edu	37	chr11	92100301	92100301	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgcctgcctgtagcacTttgccttctcgtggcctgct	10	15	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92100301	A	A	92100301	1	1	179	0	1	0	0	0	0	0	0	0	5748	1624	56	5		5	FAT3	11	92100301	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	2562567	92100301	42906215	643	145142											
GUCY1A2	2977	broad.mit.edu	37	chr11	106697918	106697918	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgccaatctggtcccaAcgcactgcctacattatctg	6	14	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106697918	G	G	106697918	1	3	179	0	1	0	0	0	0	0	0	0	6958	58	2	5		5	GUCY1A2	11	106697918	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	14597617	106697918	28308598	644	145143											
ALKBH8	91801	broad.mit.edu	37	chr11	107423852	107423852	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acccccagataatggcttatCtttatctacattgttgttct	5	10	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107423852	G	G	107423852	3	3	179	1	0	0	0	0	1	0	0	0	533	913	32	4	1449	4	ALKBH8	11	107423852	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	725934	107423852	27582664	645	145144											
NCAM1	4684	broad.mit.edu	37	chr11	113103638	113103638	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccaggatattgggaagaaGaaagggccagggtcagcaaa	14	6	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113103638	T	T	113103638	1	4	179	0	1	0	0	0	0	0	0	0	10297	957	33	3		3	NCAM1	11	113103638	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	5679786	113103638	21902878	646	145145											
USP28	57646	broad.mit.edu	37	chr11	113675814	113675814	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatagtgtgctgtgggcTtctgcacacagaaattgatg	12	6	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113675814	C	C	113675814	1	2	179	0	1	0	0	0	0	0	0	0	17185	1624	56	5		5	USP28	11	113675814	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	572176	113675814	21330702	647	145146											
ARHGEF12	23365	broad.mit.edu	37	chr11	120300646	120300646	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaagttatttttctagCgtaggacaacaggatgtcct	8	6	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120300646	T	T	120300646	1	4	179	0	1	0	0	0	0	0	0	0	899	783	27	4		4	ARHGEF12	11	120300646	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	6624832	120300646	14705870	648	145147											
ARHGEF12	23365	broad.mit.edu	37	chr11	120338034	120338034	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaggtacagcattttcactGaaataaaaagcttaagaaca	6	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120338034	A	A	120338034	1	1	179	0	1	0	0	0	0	0	0	0	899	1305	45	4		4	ARHGEF12	11	120338034	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	37388	120338034	14668482	649	145148											
VWA5A	4013	broad.mit.edu	37	chr11	123994268	123994268	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttggcattgggggtttcgGataagactctcttttaatgg	12	6	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123994268	A	A	123994268	1	1	179	0	1	0	0	0	0	0	0	0	17369	1189	41	4		4	VWA5A	11	123994268	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3656234	123994268	11012248	650	145149											
VWA5A	4013	broad.mit.edu	37	chr11	124016120	124016120	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccccttccctggcctggcGgaaggtgaccacaagagagt	12	13	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124016120	A	A	124016120	1	1	179	0	1	0	0	0	0	0	0	0	17369	1131	39	4		4	VWA5A	11	124016120	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	21852	124016120	10990396	651	145150											
NFRKB	4798	broad.mit.edu	37	chr11	129751624	129751624	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caaaaaagagcatcttacctCgactttctccagcaagatac	5	12	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129751624	G	G	129751624	3	3	179	1	0	0	0	0	1	0	0	0	10479	884	31	4	2647	4	NFRKB	11	129751624	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	5735504	129751624	5254892	652	145151											
NCAPD3	23310	broad.mit.edu	37	chr11	134080413	134080413	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaaatatatctataacatCagatgaaaagttacaaagca	5	5	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134080413	A	A	134080413	1	1	179	0	1	0	0	0	0	0	0	0	10301	841	29	3		3	NCAPD3	11	134080413	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4328789	134080413	926103	653	145152											
KDM5A	5927	broad.mit.edu	37	chr12	427541	427541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagagcccatatctatcaaCatctggagtttggaagaatc	8	9	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	427541	T	T	427541	3	4	179	1	0	0	0	0	1	0	0	0	8203	478	17	4	2484	4	KDM5A	12	427541	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08		427541	133424354	654	145153											
CACNA1C	775	broad.mit.edu	37	chr12	2797486	2797487	+	Intron	DNP	TG	AT	AT													gacaggggaaaataatggcaTgggaataccaggcaggtgga							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	2797487	AT	AT	2797486	1	1	179	0	1	0	0	0	0	0	0	0	2566	1479	51	5		5	CACNA1C	12	2797486	Intron	DNP	TG	TCGA-55-5899-01A-11D-1625-08	2369945	2797486	131054409	655	145154											
ANO2	57101	broad.mit.edu	37	chr12	5672696	5672696	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgtggggatgtctggaatCatccagtccacgaggacgct	13	11	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5672696	A	A	5672696	3	1	179	1	0	0	0	0	1	0	0	0	697	826	29	3	234	3	ANO2	12	5672696	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2875210	5672696	128179199	656	145155											
PTPRO	5800	broad.mit.edu	37	chr12	15713185	15713185	+	Frame_Shift_Del	DEL	C	-	-													catgtctttggactgattatCttttggcattttatattaat							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15713185	-	-	15713185	7	5	179	1	0	1	0	1	0	0	0	0	12917	913	32	0	2752	0	PTPRO	12	15713185	Frame_Shift_Del	DEL	C	TCGA-55-5899-01A-11D-1625-08	10040489	15713185	118138710	657	145156											
PLCZ1	89869	broad.mit.edu	37	chr12	18837256	18837256	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaagaataatagataccaTatctaggaaaaaatagatta	5	4	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18837256	C	C	18837256	1	2	179	0	1	0	0	0	0	0	0	0	12139	1421	49	5		5	PLCZ1	12	18837256	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	3124071	18837256	115014639	658	145157											
ITPR2	3709	broad.mit.edu	37	chr12	26636704	26636704	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttgaccagcgctacattcTtctcattgatgtagagaccc	9	11	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26636704	C	C	26636704	3	2	179	1	0	0	0	0	1	0	0	0	7991	1609	56	5	2230	5	ITPR2	12	26636704	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	7799448	26636704	107215191	659	145158											
ITPR2	3709	broad.mit.edu	37	chr12	26809337	26809337	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcatgtggagcatgaggcgAcagaaggacgctcggaggtc	17	8	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26809337	T	T	26809337	4	4	179	1	0	0	0	0	0	1	0	0	7991	273	10	5	5924	5	ITPR2	12	26809337	Nonsense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	172633	26809337	107042558	660	145159											
CCDC91	55297	broad.mit.edu	37	chr12	28412225	28412226	+	Intron	DNP	GG	TT	TT													gaagatatgcctattgaactGgaatgcttgatcacttaaat							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	28412226	TT	TT	28412225	1	4	179	0	1	0	0	0	0	0	0	0	2898	1363	47	2		2	CCDC91	12	28412225	Intron	DNP	GG	TCGA-55-5899-01A-11D-1625-08	1602888	28412225	105439670	661	145160											
CCDC91	55297	broad.mit.edu	37	chr12	28603339	28603339	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaataaagaggcattagtAtccgctgcaaaggtatttcc	9	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28603339	T	T	28603339	2	4	179	1	0	0	0	0	0	0	0	1	2898	436	16	5		5	CCDC91	12	28603339	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	191114	28603339	105248556	662	145161											
OVCH1	341350	broad.mit.edu	37	chr12	29614942	29614942	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgacttgctaggccaccatCtaatgaagaaacattcagag	9	10	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29614942	G	G	29614942	5	3	179	1	0	0	0	0	0	0	1	0	11417	927	32	4	1319	4	OVCH1	12	29614942	Splice_Site	SNP	C	TCGA-55-5899-01A-11D-1625-08	1011603	29614942	104236953	663	145162											
CAPRIN2	65981	broad.mit.edu	37	chr12	30878879	30878879	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccccatgaatatcatttaaGattttgtaaatgactcatac	5	8	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30878879	A	A	30878879	1	1	179	0	1	0	0	0	0	0	0	0	2662	957	33	4		4	CAPRIN2	12	30878879	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1263937	30878879	102973016	664	145163											
FGD4	121512	broad.mit.edu	37	chr12	32764273	32764273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatataaaaatatggctgGgcacggtggctcatgcctgt	11	7	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32764273	T	T	32764273	1	4	179	0	1	0	0	0	0	0	0	0	5892	1247	43	2		2	FGD4	12	32764273	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1885394	32764273	101087622	665	145164											
ALG10	84920	broad.mit.edu	37	chr12	34179132	34179132	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaattcagaaaaattcttcAgtttcttttggcttattcca	5	7	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34179132	T	T	34179132	3	4	179	1	0	0	0	0	1	0	0	0	511	188	7	5	714	5	ALG10	12	34179132	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	1414859	34179132	99672763	666	145165											
TMEM117	84216	broad.mit.edu	37	chr12	44402650	44402650	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattatttggtatgtgtgtaGatttgtgtcatgactaaagc	10	3	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44402650	T	T	44402650	1	4	179	0	1	0	0	0	0	0	0	0	16154	957	33	3		3	TMEM117	12	44402650	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	10223518	44402650	89449245	667	145166											
DDX23	9416	broad.mit.edu	37	chr12	49231325	49231325	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttaatggcatgcagttcCttgctcttatccttctcttc	5	13	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49231325	T	T	49231325	2	4	179	1	0	0	0	0	0	0	0	1	4383	680	24	4		4	DDX23	12	49231325	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	4828675	49231325	84620570	668	145167											
TFCP2	7024	broad.mit.edu	37	chr12	51497885	51497885	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctactgaattggacagtCatcaaagtattaccagacat	6	8	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51497885	T	T	51497885	1	4	179	0	1	0	0	0	0	0	0	0	15918	841	29	4		4	TFCP2	12	51497885	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2266560	51497885	82354010	669	145168											
ANKRD33	341405	broad.mit.edu	37	chr12	52282534	52282534	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccacaatgatcccaccCagctccaagccatactggat	7	15	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52282534	A	A	52282534	1	1	179	0	1	0	0	0	0	0	0	0	661	595	21	2		2	ANKRD33	12	52282534	5'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	784649	52282534	81569361	670	145169											
ACVRL1	94	broad.mit.edu	37	chr12	52312932	52312932	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggactaggatggcgtggGgtggtggctcatggctggga	21	6	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52312932	A	A	52312932	1	1	179	0	1	0	0	0	0	0	0	0	225	1247	43	4		4	ACVRL1	12	52312932	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	30398	52312932	81538963	671	145170											
OR9K2	441639	broad.mit.edu	37	chr12	55523903	55523903	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtctgaaaacaagtctatCtcctttgcaggctgtgtggc	11	9	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55523903	A	A	55523903	2	1	179	1	0	0	0	0	0	0	0	1	11348	903	32	3		3	OR9K2	12	55523903	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	3210971	55523903	78327992	672	145171											
ERBB3	2065	broad.mit.edu	37	chr12	56487890	56487890	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccccactacagggagcctCgagaatttgcccatgaggcc	10	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56487890	T	T	56487890	4	4	179	1	0	0	0	0	0	1	0	0	5250	876	31	4	1806	4	ERBB3	12	56487890	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	963987	56487890	77364005	673	145172											
LRP1	4035	broad.mit.edu	37	chr12	57569264	57569264	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgctctctgaataacgGtggctgcagccacaactgct	10	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57569264	A	A	57569264	3	1	179	1	0	0	0	0	1	0	0	0	9038	1261	44	4	3659	4	LRP1	12	57569264	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1081374	57569264	76282631	674	145173											
LRRC10	376132	broad.mit.edu	37	chr12	70004114	70004114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagagccagatggtcctcaGctcctggaggcgccggagct	15	13	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70004114	T	T	70004114	3	4	179	1	0	0	0	0	1	0	0	0	9054	962	34	3	332	3	LRRC10	12	70004114	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	12434850	70004114	63847781	675	145174											
PTPRB	5787	broad.mit.edu	37	chr12	70933485	70933485	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaactgatttatttttattgGactgtaattaaaaatgaaac	5	3	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70933485	C	C	70933485	3	2	179	1	0	0	0	0	1	0	0	0	12904	1188	41	4	985	4	PTPRB	12	70933485	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	929371	70933485	62918410	676	145175											
TRHDE	29953	broad.mit.edu	37	chr12	73046138	73046138	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagacatcgtatactgtacAggagtgtcactactggatga	11	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73046138	T	T	73046138	2	4	179	1	0	0	0	0	0	0	0	1	16603	175	7	5		5	TRHDE	12	73046138	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	2112653	73046138	60805757	677	145176											
E2F7	144455	broad.mit.edu	37	chr12	77423929	77423929	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaagcaagtgagacatcCacttgtccattcagaccgtt	9	11	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77423929	T	T	77423929	2	4	179	1	0	0	0	0	0	0	0	1	4912	581	21	4		4	E2F7	12	77423929	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	4377791	77423929	56427966	678	145177											
NAV3	89795	broad.mit.edu	37	chr12	78574754	78574754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaatcctcaagcagcacctCctcttcatcttccaggcagt	6	15	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78574754	A	A	78574754	3	1	179	1	0	0	0	0	1	0	0	0	10279	855	30	3	5669	3	NAV3	12	78574754	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1150825	78574754	55277141	679	145178											
KITLG	4254	broad.mit.edu	37	chr12	88900187	88900187	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaagacatatactgtaaaAtaatcaatgaatggtctaat	6	4	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88900187	G	G	88900187	1	3	179	0	1	0	0	0	0	0	0	0	8401	116	4	5		5	KITLG	12	88900187	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	10325433	88900187	44951708	680	145179											
NUAK1	9891	broad.mit.edu	37	chr12	106466391	106466391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggaaacgttttccttgCtggcttttttaggctctgtt	9	7	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106466391	A	A	106466391	1	1	179	0	1	0	0	0	0	0	0	0	10807	812	28	3		3	NUAK1	12	106466391	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	17566204	106466391	27385504	681	145180											
PRDM4	11108	broad.mit.edu	37	chr12	108145425	108145425	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagagagtgccacgcttacaGagttggtgctcatggccaca	12	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108145425	C	C	108145425	3	2	179	1	0	0	0	0	1	0	0	0	12565	942	33	4	1544	4	PRDM4	12	108145425	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1679034	108145425	25706470	682	145181											
ACACB	32	broad.mit.edu	37	chr12	109634706	109634706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacgggggtgttcatcttGgccctctgtggtggacaacc	15	10	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109634706	T	T	109634706	1	4	179	0	1	0	0	0	0	0	0	0	107	1363	47	2		2	ACACB	12	109634706	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1489281	109634706	24217189	683	145182											
CUX2	23316	broad.mit.edu	37	chr12	111745146	111745146	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agttcatcatcttcctccctCctactaaaccccatttgttc	2	16	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111745146	A	A	111745146	1	1	179	0	1	0	0	0	0	0	0	0	4098	870	30	3		3	CUX2	12	111745146	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2110440	111745146	22106749	684	145183											
CUX2	23316	broad.mit.edu	37	chr12	111748204	111748204	+	Frame_Shift_Del	DEL	G	-	-													ctgagcccgcggatggtggtGggggcggagcggcggggccc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111748204	-	-	111748204	7	5	179	1	0	1	0	1	0	0	0	0	4098	1348	47	0	1676	0	CUX2	12	111748204	Frame_Shift_Del	DEL	G	TCGA-55-5899-01A-11D-1625-08	3058	111748204	22103691	685	145184											
TBX5	6910	broad.mit.edu	37	chr12	114836423	114836423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggtgagcttgagtttctgGaaggagacgagctgcctcat	14	7	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114836423	T	T	114836423	3	4	179	1	0	0	0	0	1	0	0	0	15783	1165	41	3	1178	3	TBX5	12	114836423	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3088219	114836423	19015472	686	145185											
LRRC43	254050	broad.mit.edu	37	chr12	122677642	122677642	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttccattaaaagtcctgaGgctggcggggcgcggtggct	15	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122677642	A	A	122677642	1	1	179	0	1	0	0	0	0	0	0	0	9088	1015	35	4		4	LRRC43	12	122677642	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	7841219	122677642	11174253	687	145186											
CHFR	55743	broad.mit.edu	37	chr12	133434066	133434066	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccgctccacgggacagcGgcaggtaggacacagggacg	16	12	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133434066	A	A	133434066	3	1	179	1	0	0	0	0	1	0	0	0	3368	1116	39	4	1007	4	CHFR	12	133434066	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	10756424	133434066	417829	688	145187											
GSX1	219409	broad.mit.edu	37	chr13	28368064	28368064	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcagggaaggacgaccgGgatcttacggtcactcccta	11	13	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28368064	T	T	28368064	2	4	179	1	0	0	0	0	0	0	0	1	6914	1219	43	2		2	GSX1	13	28368064	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08		28368064	86801814	689	145188											
FLT1	2321	broad.mit.edu	37	chr13	28883126	28883126	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccagctctaatgagtcagGagaccacaggcaccatatcc	8	13	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28883126	T	T	28883126	1	4	179	0	1	0	0	0	0	0	0	0	5999	1189	41	3		3	FLT1	13	28883126	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	515062	28883126	86286752	690	145189											
HSPH1	10808	broad.mit.edu	37	chr13	31725161	31725161	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtctgtgctgttagagctCattagctttttcagtttttc	9	7	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31725161	T	T	31725161	3	4	179	1	0	0	0	0	1	0	0	0	7501	826	29	4	1793	4	HSPH1	13	31725161	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2842035	31725161	83444717	691	145190											
TRPC4	7223	broad.mit.edu	37	chr13	38237539	38237539	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacattaccagtagaaatgTctattagacttacgttgaaa	6	7	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38237539	A	A	38237539	1	1	179	0	1	0	0	0	0	0	0	0	16705	1682	58	5		5	TRPC4	13	38237539	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	6512378	38237539	76932339	692	145191											
SLC25A15	10166	broad.mit.edu	37	chr13	41373228	41373228	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactgaccgggcagccctttGacacaatgaaagtgaagatg	11	9	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41373228	C	C	41373228	3	2	179	1	0	0	0	0	1	0	0	0	14591	1290	45	4	97	4	SLC25A15	13	41373228	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3135689	41373228	73796650	693	145192											
KIAA0564	23078	broad.mit.edu	37	chr13	42263653	42263653	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaactctgtttctgaaaagTacaaacattagacaccatat	5	8	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42263653	C	C	42263653	1	2	179	0	1	0	0	0	0	0	0	0	8255	1653	57	5		5	KIAA0564	13	42263653	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	890425	42263653	72906225	694	145193											
ENOX1	55068	broad.mit.edu	37	chr13	43839584	43839584	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaccaattccttggtacCttttaactgcaaattttaag	5	10	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43839584	A	A	43839584	3	1	179	1	0	0	0	0	1	0	0	0	5168	681	24	2	386	2	ENOX1	13	43839584	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1575931	43839584	71330294	695	145194											
VPS36	51028	broad.mit.edu	37	chr13	53024757	53024757	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacccagccccggccctcCgaggccgcgagcagcgcgcc	13	22	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53024757	A	A	53024757	1	1	179	0	1	0	0	0	0	0	0	0	17331	667	23	1		1	VPS36	13	53024757	5'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	9185173	53024757	62145121	696	145195											
PCDH8	5100	broad.mit.edu	37	chr13	53418996	53418996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgatggatgtgcgttgggcCcgctgcaggatgggctccag	18	10	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53418996	A	A	53418996	3	1	179	1	0	0	0	0	1	0	0	0	11611	623	22	2	304	2	PCDH8	13	53418996	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	394239	53418996	61750882	697	145196											
PCDH8	5100	broad.mit.edu	37	chr13	53422643	53422643	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtcgggcgtcagtctcAggctctcggaatcacgctct	12	14	5	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53422643	G	G	53422643	1	3	179	0	1	0	0	0	0	0	0	0	11611	203	7	5		5	PCDH8	13	53422643	5'UTR	SNP	A	TCGA-55-5899-01A-11D-1625-08	3647	53422643	61747235	698	145197											
PCDH9	5101	broad.mit.edu	37	chr13	67802318	67802318	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attctgttggaggttgtgaaAatttccccagtgctgctgga	12	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67802318	T	T	67802318	2	4	179	1	0	0	0	0	0	0	0	1	11612	10	1	5		5	PCDH9	13	67802318	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	14379675	67802318	47367560	699	145198											
DIS3	22894	broad.mit.edu	37	chr13	73348154	73348154	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttattattcctacaactCtacctgtaggcttcaacatt	3	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73348154	G	G	73348154	3	3	179	1	0	0	0	0	1	0	0	0	4575	913	32	4	1905	4	DIS3	13	73348154	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	5545836	73348154	41821724	700	145199											
SLITRK6	84189	broad.mit.edu	37	chr13	86369467	86369467	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacgattgtttcccaagtGaagcatttccaaagtgaaat	7	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86369467	C	C	86369467	3	2	179	1	0	0	0	0	1	0	0	0	14861	1290	45	4	1352	4	SLITRK6	13	86369467	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	13021313	86369467	28800411	701	145200											
GPC5	2262	broad.mit.edu	37	chr13	92101267	92101267	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaaacttggctgggtttatTtccttgtatttacataatat	7	6	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92101267	A	A	92101267	1	1	179	0	1	0	0	0	0	0	0	0	6666	1856	64	5		5	GPC5	13	92101267	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	5731800	92101267	23068611	702	145201											
GPC6	10082	broad.mit.edu	37	chr13	94482724	94482724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgaagattcaggttaccCgcgccttcattgctgccagg	10	12	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94482724	A	A	94482724	3	1	179	1	0	0	0	0	1	0	0	0	6667	652	23	1	647	1	GPC6	13	94482724	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2381457	94482724	20687154	703	145202											
NALCN	259232	broad.mit.edu	37	chr13	101728270	101728270	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaatacaatcacacaagcgCccatcatgtaagtatatgca	5	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101728270	T	T	101728270	3	4	179	1	0	0	0	0	1	0	0	0	10242	739	26	4	1348	4	NALCN	13	101728270	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	7245546	101728270	13441608	704	145203											
IRS2	8660	broad.mit.edu	37	chr13	110438032	110438032	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctcgttctcggcggccacGgcgaagtactcgtccttggt	13	13	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110438032	C	C	110438032	2	2	179	1	0	0	0	0	0	0	0	1	7911	1103	39	4		4	IRS2	13	110438032	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	8709762	110438032	4731846	705	145204											
TFDP1	7027	broad.mit.edu	37	chr13	114287391	114287391	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcgattcaggctgatcctCaggagggctgacagtcgctt	12	12	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114287391	T	T	114287391	1	4	179	0	1	0	0	0	0	0	0	0	15920	841	29	4		4	TFDP1	13	114287391	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3849359	114287391	882487	706	145205											
OR4M1	441670	broad.mit.edu	37	chr14	20248812	20248812	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacactttgttggggcttcgGagatgttcttgctcacagtg	12	8	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20248812	A	A	20248812	3	1	179	1	0	0	0	0	1	0	0	0	11169	1175	41	4	333	4	OR4M1	14	20248812	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08		20248812	87100728	707	145206											
OR4K17	390436	broad.mit.edu	37	chr14	20585717	20585717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttgctgggactgaccagctCccaggatgtagagtttcttc	11	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20585717	A	A	20585717	3	1	179	1	0	0	0	0	1	0	0	0	11165	855	30	3	154	3	OR4K17	14	20585717	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	336905	20585717	86763823	708	145207											
PRMT5	10419	broad.mit.edu	37	chr14	23397745	23397745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgatcgtgtctggggacCgggccgattcttagcaggtt	15	9	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23397745	A	A	23397745	3	1	179	1	0	0	0	0	1	0	0	0	12645	652	23	1	1787	1	PRMT5	14	23397745	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2812028	23397745	83951795	709	145208											
MYH7	4625	broad.mit.edu	37	chr14	23885271	23885271	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcggcggccatgcggttgGcgtggctgagctggatctcc	16	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23885271	A	A	23885271	3	1	179	1	0	0	0	0	1	0	0	0	10133	1203	42	4	940	4	MYH7	14	23885271	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	487526	23885271	83464269	710	145209											
TGM1	7051	broad.mit.edu	37	chr14	24731213	24731213	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattaaagccttttagctctCagctgaggaggacagaccgg	11	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24731213	T	T	24731213	1	4	179	0	1	0	0	0	0	0	0	0	15952	841	29	4		4	TGM1	14	24731213	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	845942	24731213	82618327	711	145210											
GZMH	2999	broad.mit.edu	37	chr14	25077018	25077018	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagagcccaggagcagtgaaGagcagatgacagctgtggca	15	8	0	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25077018	T	T	25077018	1	4	179	0	1	0	0	0	0	0	0	0	6982	957	33	3		3	GZMH	14	25077018	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	345805	25077018	82272522	712	145211											
PRKD1	5587	broad.mit.edu	37	chr14	30396583	30396583	+	Frame_Shift_Del	DEL	C	-	-													atggaacgagatgcccccgaCcggggccgcgacaggagcca							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30396583	-	-	30396583	7	5	179	1	0	1	0	1	0	0	0	0	12624	507	18	0	2674	0	PRKD1	14	30396583	Frame_Shift_Del	DEL	C	TCGA-55-5899-01A-11D-1625-08	5319565	30396583	76952957	713	145212											
ARHGAP5	394	broad.mit.edu	37	chr14	32563472	32563472	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtggaagtgaagaagatccActtctttctcctgttgaaac	9	9	2	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32563472	T	T	32563472	2	4	179	1	0	0	0	0	0	0	0	1	888	146	6	5		5	ARHGAP5	14	32563472	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	2166889	32563472	74786068	714	145213											
AKAP6	9472	broad.mit.edu	37	chr14	33015819	33015819	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaaaacctaacaaagcttCtgcctcagaaacccagagga	8	11	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33015819	T	T	33015819	2	4	179	1	0	0	0	0	0	0	0	1	455	912	32	4		4	AKAP6	14	33015819	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	452347	33015819	74333721	715	145214											
SNX6	58533	broad.mit.edu	37	chr14	35055519	35055519	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatctgcagcacctatggaGaaagttttaagaatttagta	8	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35055519	A	A	35055519	1	1	179	0	1	0	0	0	0	0	0	0	15020	957	33	4		4	SNX6	14	35055519	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2039700	35055519	72294021	716	145215											
MIA2	117153	broad.mit.edu	37	chr14	39717036	39717036	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcctctaacaagtgaattaGaccctgaaaaagaacaagaa	6	8	1	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39717036	T	T	39717036	3	4	179	1	0	0	0	0	1	0	0	0	9657	942	33	3	1272	3	MIA2	14	39717036	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	4661517	39717036	67632504	717	145216											
MDGA2	161357	broad.mit.edu	37	chr14	47342909	47342909	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagatggataggaagatttGcatctcatttataaaatctc	7	5	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47342909	T	T	47342909	1	4	179	0	1	0	0	0	0	0	0	0	9500	1334	46	3		3	MDGA2	14	47342909	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	7625873	47342909	60006631	718	145217											
SAV1	60485	broad.mit.edu	37	chr14	51111641	51111641	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tattttctccctctcattgtCcagtccacagaccagccagg	6	15	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51111641	G	G	51111641	3	3	179	1	0	0	0	0	1	0	0	0	13968	856	30	4	536	4	SAV1	14	51111641	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3768732	51111641	56237899	719	145218											
PYGL	5836	broad.mit.edu	37	chr14	51378535	51378535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcattgttcaccacatctgCcactgaagtgatcagcttta	7	11	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51378535	A	A	51378535	3	1	179	1	0	0	0	0	1	0	0	0	12969	739	26	3	681	3	PYGL	14	51378535	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	266894	51378535	55971005	720	145219											
PTGDR	5729	broad.mit.edu	37	chr14	52735003	52735003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggccccggtggtgagCgccttctccctggctttctg	14	14	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52735003	A	A	52735003	3	1	179	1	0	0	0	0	1	0	0	0	12847	767	27	3	473	3	PTGDR	14	52735003	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1356468	52735003	54614537	721	145220											
TBPL2	387332	broad.mit.edu	37	chr14	55895506	55895506	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggtaaattcaaagttcaAgctatataaccgtcatacct	5	9	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55895506	T	T	55895506	1	4	179	0	1	0	0	0	0	0	0	0	15768	87	3	5		5	TBPL2	14	55895506	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	3160503	55895506	51454034	722	145221											
KTN1	3895	broad.mit.edu	37	chr14	56116524	56116526	+	In_Frame_Del	DEL	AAG	-	-													cctctctagttgaagaacttAagaaagtgtaagtgataaca							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56116526	-	-	56116524	7	5	179	1	0	1	0	1	0	0	0	0	8657	363	13	0	2480	0	KTN1	14	56116524	In_Frame_Del	DEL	AAG	TCGA-55-5899-01A-11D-1625-08	221018	56116524	51233016	723	145222											
KTN1	3895	broad.mit.edu	37	chr14	56126531	56126531	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggcacctgatttttacAgttctatttggatatcttga	7	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56126531	G	G	56126531	1	3	179	0	1	0	0	0	0	0	0	0	8657	203	7	5		5	KTN1	14	56126531	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	10007	56126531	51223009	724	145223											
ARID4A	5926	broad.mit.edu	37	chr14	58795064	58795064	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatcctttaatgatgttacGtgggaggaaaaaaaaaatag	10	3	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58795064	C	C	58795064	1	2	179	0	1	0	0	0	0	0	0	0	921	1160	40	4		4	ARID4A	14	58795064	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2668533	58795064	48554476	725	145224											
C14orf135	64430	broad.mit.edu	37	chr14	60591648	60591648	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagagtggaggactagctGtatgcccagttccaaaatga	12	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60591648	A	A	60591648	3	1	179	1	0	0	0	0	1	0	0	0	1758	1377	48	4	2083	4	C14orf135	14	60591648	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1796584	60591648	46757892	726	145225											
SIX6	4990	broad.mit.edu	37	chr14	60976401	60976401	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgtggcttgaagcacaCtaccaggaggctgagaagct	14	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60976401	A	A	60976401	3	1	179	1	0	0	0	0	1	0	0	0	14464	564	20	3	287	3	SIX6	14	60976401	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	384753	60976401	46373139	727	145226											
SIX4	51804	broad.mit.edu	37	chr14	61180536	61180536	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagatttgcttgccaccggTgcagacattggttggctatc	12	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61180536	A	A	61180536	2	1	179	1	0	0	0	0	0	0	0	1	14462	1683	59	5		5	SIX4	14	61180536	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	204135	61180536	46169004	728	145227											
HIF1A	3091	broad.mit.edu	37	chr14	62207964	62207964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttttgagataaatgtatGtgatagtacatgatttttaa	7	1	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62207964	T	T	62207964	1	4	179	0	1	0	0	0	0	0	0	0	7170	1392	48	3		3	HIF1A	14	62207964	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1027428	62207964	45141576	729	145228											
PPP2R5E	5529	broad.mit.edu	37	chr14	63861875	63861875	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactaggtgagcatctcttGgtgccacctgaacctaattt	9	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63861875	A	A	63861875	1	1	179	0	1	0	0	0	0	0	0	0	12497	1363	47	4		4	PPP2R5E	14	63861875	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1653911	63861875	43487665	730	145229											
SYNE2	23224	broad.mit.edu	37	chr14	64488150	64488150	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagggaggatctcgaccaaGccaagacccagatcgggatg	13	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64488150	A	A	64488150	3	1	179	1	0	0	0	0	1	0	0	0	15565	971	34	4	5407	4	SYNE2	14	64488150	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	626275	64488150	42861390	731	145230											
C14orf50	145376	broad.mit.edu	37	chr14	65054946	65054946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaaaaagtatcatcaaGtagacgtcagattcccagcc	8	9	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65054946	T	T	65054946	3	4	179	1	0	0	0	0	1	0	0	0	1790	1029	36	3	1057	3	C14orf50	14	65054946	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	566796	65054946	42294594	732	145231											
GPHN	10243	broad.mit.edu	37	chr14	67646459	67646459	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacacaaacttatatataatCttccttggttatgactgatt	4	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67646459	T	T	67646459	1	4	179	0	1	0	0	0	0	0	0	0	6675	928	32	4		4	GPHN	14	67646459	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2591513	67646459	39703081	733	145232											
ZNF410	57862	broad.mit.edu	37	chr14	74376137	74376137	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggtggttcactcaggtaTcagaacctctgccattcata	8	11	6	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74376137	A	A	74376137	1	1	179	0	1	0	0	0	0	0	0	0	18017	1450	50	5		5	ZNF410	14	74376137	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	6729678	74376137	32973403	734	145233											
KIAA0317	9870	broad.mit.edu	37	chr14	75143478	75143478	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaacaaagacaatggaatcTaacatttatttattttattt	5	4	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75143478	A	A	75143478	1	1	179	0	1	0	0	0	0	0	0	0	8237	1537	53	5		5	KIAA0317	14	75143478	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	767341	75143478	32206062	735	145234											
C14orf145	145508	broad.mit.edu	37	chr14	80997134	80997134	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agataaaatactgaaagagaCaagccaactctttctcactc	5	10	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80997134	G	G	80997134	1	3	179	0	1	0	0	0	0	0	0	0	1762	493	17	4		4	C14orf145	14	80997134	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	5853656	80997134	26352406	736	145235											
GALC	2581	broad.mit.edu	37	chr14	88406293	88406293	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatttttttgctgtaacttCaacacgtcctaaagcatata	4	10	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88406293	A	A	88406293	4	1	179	1	0	0	0	0	0	1	0	0	6263	835	29	3	198	3	GALC	14	88406293	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	7409159	88406293	18943247	737	145236											
TDP1	55775	broad.mit.edu	37	chr14	90455297	90455297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacgcagagtcctggcctGtcgtaggtcagttttcaagc	11	11	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90455297	T	T	90455297	3	4	179	1	0	0	0	0	1	0	0	0	15850	1377	48	3	1214	3	TDP1	14	90455297	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2049004	90455297	16894243	738	145237											
TTC7B	145567	broad.mit.edu	37	chr14	91233277	91233277	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttcatgtccaaagtcagCacaccaagaccactggccgc	8	16	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91233277	T	T	91233277	1	4	179	0	1	0	0	0	0	0	0	0	16839	725	25	4		4	TTC7B	14	91233277	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	777980	91233277	16116263	739	145238											
C14orf159	80017	broad.mit.edu	37	chr14	91626633	91626633	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctgctacttattcaagttGacacgatgcccttcacactc	5	14	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91626633	A	A	91626633	1	1	179	0	1	0	0	0	0	0	0	0	1768	1305	45	4		4	C14orf159	14	91626633	5'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	393356	91626633	15722907	740	145239											
CPSF2	53981	broad.mit.edu	37	chr14	92600598	92600598	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgttattcttttagtctcGacacaatacagaagatttta	6	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92600598	A	A	92600598	3	1	179	1	0	0	0	0	1	0	0	0	3857	1058	37	4	324	4	CPSF2	14	92600598	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	973965	92600598	14748942	741	145240											
KIAA1409	57578	broad.mit.edu	37	chr14	93962804	93962804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgaaatataaacaagaaGtctggaaagtaagttttggg	10	3	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93962804	T	T	93962804	3	4	179	1	0	0	0	0	1	0	0	0	8300	1029	36	3	239	3	KIAA1409	14	93962804	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1362206	93962804	13386736	742	145241											
FAM181A	90050	broad.mit.edu	37	chr14	94394429	94394429	+	Intron	DEL	T	-	-													tccctctacccaggactctgTttagggctgagaggtgctgg							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94394429	-	-	94394429	6	5	179	0	1	1	0	1	0	0	0	0	5554	1740	60	0		0	FAM181A	14	94394429	Intron	DEL	T	TCGA-55-5899-01A-11D-1625-08	431625	94394429	12955111	743	145242											
SERPINA3	12	broad.mit.edu	37	chr14	95081191	95081191	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagctgcagctgagtatggGaaatgccatgtttgtcaaag	13	6	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95081191	A	A	95081191	3	1	179	1	0	0	0	0	1	0	0	0	14203	1174	41	4	415	4	SERPINA3	14	95081191	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	686762	95081191	12268349	744	145243											
C14orf49	161176	broad.mit.edu	37	chr14	95932316	95932316	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagccttcattctcttctgGgcatcttcgtccacgctggg	9	14	5	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95932316	C	C	95932316	2	2	179	1	0	0	0	0	0	0	0	1	1789	1219	43	4		4	C14orf49	14	95932316	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	851125	95932316	11417224	745	145244											
WDR25	79446	broad.mit.edu	37	chr14	100847475	100847475	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagcatggctcctgtgaaGacccagggggctatcgcctt	12	12	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100847475	A	A	100847475	3	1	179	1	0	0	0	0	1	0	0	0	17409	942	33	4	216	4	WDR25	14	100847475	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	4915159	100847475	6502065	746	145245											
WDR25	79446	broad.mit.edu	37	chr14	100996231	100996231	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggcagcgccgatggccgGgtcctgatgtacagcttccg	15	13	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100996231	T	T	100996231	2	4	179	1	0	0	0	0	0	0	0	1	17409	1219	43	2		2	WDR25	14	100996231	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	148756	100996231	6353309	747	145246											
C14orf79	122616	broad.mit.edu	37	chr14	105453293	105453293	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctggccagggagggggctGacagccccagagcgtctgct	17	12	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105453293	T	T	105453293	1	4	179	0	1	0	0	0	0	0	0	0	1793	1305	45	3		3	C14orf79	14	105453293	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4457062	105453293	1896247	748	145247											
PACS2	23241	broad.mit.edu	37	chr14	105847241	105847241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacagggctggagaggccGcagcacgggtgtggtttcca	17	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105847241	T	T	105847241	1	4	179	0	1	0	0	0	0	0	0	0	11467	1102	38	3		3	PACS2	14	105847241	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	393948	105847241	1502299	749	145248											
GABRA5	2558	broad.mit.edu	37	chr15	27193064	27193064	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaatggcgtgtccttacattCgtattatattttgcagaaaa	7	6	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27193064	T	T	27193064	1	4	179	0	1	0	0	0	0	0	0	0	6224	899	31	4		4	GABRA5	15	27193064	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08		27193064	75338328	750	145249											
TJP1	7082	broad.mit.edu	37	chr15	30008950	30008950	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaagtatgacagctgttttCgataatattcttcatcttct	5	8	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30008950	T	T	30008950	3	4	179	1	0	0	0	0	1	0	0	0	16052	884	31	4	1203	4	TJP1	15	30008950	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2815886	30008950	72522442	751	145250											
ARHGAP11B	89839	broad.mit.edu	37	chr15	30930917	30930917	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgaaagacaagtaaatgtGaagttgtaattgcttatgtc	11	3	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30930917	C	C	30930917	1	2	179	0	1	0	0	0	0	0	0	0	866	1305	45	4		4	ARHGAP11B	15	30930917	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	921967	30930917	71600475	752	145251											
OTUD7A	161725	broad.mit.edu	37	chr15	31796019	31796019	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggggtcctcagagttgtccAcactgtgaaacaaaacagag	11	10	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31796019	T	T	31796019	3	4	179	1	0	0	0	0	1	0	0	0	11412	159	6	5	1925	5	OTUD7A	15	31796019	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	865102	31796019	70735373	753	145252											
CHRNA7	1139	broad.mit.edu	37	chr15	32460267	32460267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccagtgtggagatgagcGccgtggcgccgccgcccgcc	17	15	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32460267	T	T	32460267	3	4	179	1	0	0	0	0	1	0	0	0	3419	1087	38	3	1155	3	CHRNA7	15	32460267	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	664248	32460267	70071125	754	145253											
MEIS2	4212	broad.mit.edu	37	chr15	37386705	37386705	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatggtttaatcaacacGgggagcgttatttcctgctt	11	7	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37386705	A	A	37386705	1	1	179	0	1	0	0	0	0	0	0	0	9561	1131	39	4		4	MEIS2	15	37386705	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4926438	37386705	65144687	755	145254											
BUB1B	701	broad.mit.edu	37	chr15	40512823	40512823	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggattctgaatgccaatgatGaggccacagtgtctgttctt	11	8	3	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40512823	A	A	40512823	3	1	179	1	0	0	0	0	1	0	0	0	1581	1291	45	4	3106	4	BUB1B	15	40512823	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	3126118	40512823	62018569	756	145255											
IVD	3712	broad.mit.edu	37	chr15	40707610	40707610	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgacaggctcatgcaaGcggtcctggaccacaccatt	9	13	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40707610	A	A	40707610	3	1	179	1	0	0	0	0	1	0	0	0	7998	971	34	4	932	4	IVD	15	40707610	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	194787	40707610	61823782	757	145256											
SLC24A5	283652	broad.mit.edu	37	chr15	48414089	48414089	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgttatttctccatcatcgGagtttcccgaagggtttttc	9	9	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48414089	C	C	48414089	3	2	179	1	0	0	0	0	1	0	0	0	14583	1175	41	4	163	4	SLC24A5	15	48414089	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	7706479	48414089	54117303	758	145257											
LIPC	3990	broad.mit.edu	37	chr15	58724324	58724324	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaagcctgaaaccaggtaaGagcctgacttttctccagag	9	11	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58724324	C	C	58724324	1	2	179	0	1	0	0	0	0	0	0	0	8893	957	33	4		4	LIPC	15	58724324	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	10310235	58724324	43807068	759	145258											
TLN2	83660	broad.mit.edu	37	chr15	63073381	63073381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaccaaagggaacatttgtcGactatcagacgactgtggtt	10	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63073381	T	T	63073381	3	4	179	1	0	0	0	0	1	0	0	0	16071	1058	37	3	5719	3	TLN2	15	63073381	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	4349057	63073381	39458011	760	145259											
CA12	771	broad.mit.edu	37	chr15	63632874	63632874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcacacagggctgactacCtccttctccagcagagagtg	10	13	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63632874	T	T	63632874	1	4	179	0	1	0	0	0	0	0	0	0	2539	696	24	4		4	CA12	15	63632874	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	559493	63632874	38898518	761	145260											
PKM2	5315	broad.mit.edu	37	chr15	72502878	72502878	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actagaatccagctccaattCccctgcccaggagccaaagc	7	16	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72502878	G	G	72502878	1	3	179	0	1	0	0	0	0	0	0	0	12072	870	30	4		4	PKM2	15	72502878	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	8870004	72502878	30028514	762	145261											
ISLR2	57611	broad.mit.edu	37	chr15	74426316	74426316	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaagggccggggcaacagCgtcctgccttccaaacccga	12	16	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74426316	G	G	74426316	3	3	179	1	0	0	0	0	1	0	0	0	7929	767	27	4	1223	4	ISLR2	15	74426316	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1923438	74426316	28105076	763	145262											
RASGRF1	5923	broad.mit.edu	37	chr15	79307566	79307566	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaagacaaagcccagcatCtctgaaccccagtagctggc	8	15	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79307566	T	T	79307566	1	4	179	0	1	0	0	0	0	0	0	0	13180	928	32	4		4	RASGRF1	15	79307566	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4881250	79307566	23223826	764	145263											
AKAP13	11214	broad.mit.edu	37	chr15	86262211	86262211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattttaaggttcaaattgGgctctaaactagctttggga	9	6	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86262211	T	T	86262211	1	4	179	0	1	0	0	0	0	0	0	0	449	1247	43	2		2	AKAP13	15	86262211	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	6954645	86262211	16269181	765	145264											
SV2B	9899	broad.mit.edu	37	chr15	91795753	91795753	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatcatcccacactatggtGagtcatggctccaaacagcc	8	14	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91795753	T	T	91795753	1	4	179	0	1	0	0	0	0	0	0	0	15536	1305	45	3		3	SV2B	15	91795753	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	5533542	91795753	10735639	766	145265											
ADAMTS17	170691	broad.mit.edu	37	chr15	100636612	100636612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaagtggcaggtcttgcCgtccccgctgcagaccccgc	11	18	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100636612	A	A	100636612	3	1	179	1	0	0	0	0	1	0	0	0	262	652	23	1	1233	1	ADAMTS17	15	100636612	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	8840859	100636612	1894780	767	145266											
ADAMTS17	170691	broad.mit.edu	37	chr15	100649100	100649100	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatccactcccctaggCctcctgagacctctgctcta	6	16	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100649100	A	A	100649100	1	1	179	0	1	0	0	0	0	0	0	0	262	754	26	3		3	ADAMTS17	15	100649100	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	12488	100649100	1882292	768	145267											
LRRK1	79705	broad.mit.edu	37	chr15	101597147	101597147	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaccagctccagattgcCaagaagctgtccaagggcat	9	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101597147	A	A	101597147	2	1	179	1	0	0	0	0	0	0	0	1	9119	581	21	2		2	LRRK1	15	101597147	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	948047	101597147	934245	769	145268											
CRAMP1L	57585	broad.mit.edu	37	chr16	1709952	1709952	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggaggagcagtcgatgacGcccccagggaaggtggtgac	17	10	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1709952	C	C	1709952	2	2	179	1	0	0	0	0	0	0	0	1	3878	1074	38	4		4	CRAMP1L	16	1709952	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08		1709952	88644801	770	145269											
NOXO1	124056	broad.mit.edu	37	chr16	2030675	2030675	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgagaagctttgggagaaCgcggtcagatctccgcagca	13	11	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2030675	T	T	2030675	3	4	179	1	0	0	0	0	1	0	0	0	10656	536	19	4	949	4	NOXO1	16	2030675	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	320723	2030675	88324078	771	145270											
CREBBP	1387	broad.mit.edu	37	chr16	3824524	3824524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcttagataatgttccaTgtgagagggagggctatctg	14	6	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3824524	A	A	3824524	1	1	179	0	1	0	0	0	0	0	0	0	3893	1479	51	5		5	CREBBP	16	3824524	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1793849	3824524	86530229	772	145271											
SEC14L5	9717	broad.mit.edu	37	chr16	5053350	5053350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgtggggagggtgttgGtggccttgggaggcagcaga	20	8	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5053350	T	T	5053350	1	4	179	0	1	0	0	0	0	0	0	0	14098	1276	44	3		3	SEC14L5	16	5053350	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1228826	5053350	85301403	773	145272											
TEKT5	146279	broad.mit.edu	37	chr16	10721632	10721632	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggtctgcagggtgtcgtcGatggtgaacacctcgttcac	14	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10721632	A	A	10721632	2	1	179	1	0	0	0	0	0	0	0	1	15878	1048	37	4		4	TEKT5	16	10721632	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	5668282	10721632	79633121	774	145273											
CIITA	4261	broad.mit.edu	37	chr16	11012196	11012196	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagaggtagcttaagtctgtCgacagcgccattcacagcct	11	11	2	1	rs45563036	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11012196	T	T	11012196	1	4	179	0	1	0	0	0	0	0	0	0	3459	899	31	4		4	CIITA	16	11012196	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	290564	11012196	79342557	775	145274											
ARL6IP1	23204	broad.mit.edu	37	chr16	18806799	18806799	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaccatcttaggttttTcttcctttagtgtgaagagg	9	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18806799	C	C	18806799	3	2	179	1	0	0	0	0	1	0	0	0	946	1783	62	5	228	5	ARL6IP1	16	18806799	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	7794603	18806799	71547954	776	145275											
PRKCB	5579	broad.mit.edu	37	chr16	24202429	24202429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgatgaccaaacacccaGgcaaacgtctgggttgtgga	12	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24202429	T	T	24202429	3	4	179	1	0	0	0	0	1	0	0	0	12614	1000	35	2	1803	2	PRKCB	16	24202429	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	5395630	24202429	66152324	777	145276											
SRCAP	10847	broad.mit.edu	37	chr16	30715722	30715722	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtattttatgtttcttttCttttttgtcatggatttagg	8	3	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30715722	T	T	30715722	1	4	179	0	1	0	0	0	0	0	0	0	15253	928	32	4		4	SRCAP	16	30715722	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	6513293	30715722	59639031	778	145277											
FBXL19	54620	broad.mit.edu	37	chr16	30941291	30941291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagccagggctggaactcaGgactgtccctcgggctgttc	14	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30941291	T	T	30941291	1	4	179	0	1	0	0	0	0	0	0	0	5772	1015	35	2		2	FBXL19	16	30941291	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	225569	30941291	59413462	779	145278											
STX1B	112755	broad.mit.edu	37	chr16	31012357	31012357	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggcaagtgagatgtctgGgtgggaaccccaggcccctt	16	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31012357	C	C	31012357	1	2	179	0	1	0	0	0	0	0	0	0	15462	1247	43	4		4	STX1B	16	31012357	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	71066	31012357	59342396	780	145279											
PRSS8	5652	broad.mit.edu	37	chr16	31146444	31146444	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatccaagtcacctcccccTcccctcctccctctccgagg	5	23	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31146444	C	C	31146444	1	2	179	0	1	0	0	0	0	0	0	0	12741	1566	54	5		5	PRSS8	16	31146444	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	134087	31146444	59208309	781	145280											
VPS35	55737	broad.mit.edu	37	chr16	46696803	46696803	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacacattcagtaaaagaaGagtaaattcatgtgcattac	6	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46696803	C	C	46696803	1	2	179	0	1	0	0	0	0	0	0	0	17330	957	33	4		4	VPS35	16	46696803	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	15550359	46696803	43657950	782	145281											
ABCC12	94160	broad.mit.edu	37	chr16	48138975	48138975	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagagcccagcaccatgCctggcacactgcaggtgctc	10	18	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48138975	A	A	48138975	1	1	179	0	1	0	0	0	0	0	0	0	52	754	26	3		3	ABCC12	16	48138975	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1442172	48138975	42215778	783	145282											
ABCC11	85320	broad.mit.edu	37	chr16	48249115	48249115	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agactttccataccttcaatGatttttgcaaatggtttctc	5	9	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48249115	A	A	48249115	2	1	179	1	0	0	0	0	0	0	0	1	51	1280	45	4		4	ABCC11	16	48249115	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	110140	48249115	42105638	784	145283											
NKD1	85407	broad.mit.edu	37	chr16	50666382	50666382	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggctggacgggccaggcGggccgtgcgggtggtgttca	21	10	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50666382	A	A	50666382	1	1	179	0	1	0	0	0	0	0	0	0	10536	1131	39	4		4	NKD1	16	50666382	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2417267	50666382	39688371	785	145284											
CHD9	80205	broad.mit.edu	37	chr16	53330980	53330980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttagagctatggctaggCtacataagaaaactgatgat	9	5	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53330980	A	A	53330980	3	1	179	1	0	0	0	0	1	0	0	0	3363	796	28	3	5737	3	CHD9	16	53330980	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2664598	53330980	37023773	786	145285											
LPCAT2	54947	broad.mit.edu	37	chr16	55584841	55584841	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggctaataacatgtatctAtaattctttgtttgtttaga	7	4	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55584841	T	T	55584841	1	4	179	0	1	0	0	0	0	0	0	0	8998	464	16	5		5	LPCAT2	16	55584841	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	2253861	55584841	34769912	787	145286											
NUP93	9688	broad.mit.edu	37	chr16	56855440	56855440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatctataatgagaaaattGtaaatggacacctgcagcct	7	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56855440	T	T	56855440	3	4	179	1	0	0	0	0	1	0	0	0	10867	1377	48	3	611	3	NUP93	16	56855440	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1270599	56855440	33499313	788	145287											
SLC12A3	6559	broad.mit.edu	37	chr16	56913449	56913449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgagccccaaatcccCacagaccatgagcatggtgt	9	15	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56913449	A	A	56913449	1	1	179	0	1	0	0	0	0	0	0	0	14497	609	21	2		2	SLC12A3	16	56913449	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	58009	56913449	33441304	789	145288											
CCDC102A	92922	broad.mit.edu	37	chr16	57562734	57562734	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctggcgcacctcctcgCgcgcgcggttgcgctcagcg	15	17	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57562734	T	T	57562734	3	4	179	1	0	0	0	0	1	0	0	0	2762	768	27	4	1328	4	CCDC102A	16	57562734	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	649285	57562734	32792019	790	145289											
CDH11	1009	broad.mit.edu	37	chr16	65026828	65026828	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacagtacctgtctgtgcTtccaccgaaaaatagggttg	9	11	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65026828	C	C	65026828	2	2	179	1	0	0	0	0	0	0	0	1	3127	1606	56	5		5	CDH11	16	65026828	Silent	SNP	T	TCGA-55-5899-01A-11D-1625-08	7464094	65026828	25327925	791	145290											
GFOD2	81577	broad.mit.edu	37	chr16	67709851	67709851	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggcaggaagcgcagcacgTtccctaccaggctcatgagc	12	14	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67709851	A	A	67709851	3	1	179	1	0	0	0	0	1	0	0	0	6408	1725	60	5	796	5	GFOD2	16	67709851	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	2683023	67709851	22644902	792	145291											
RANBP10	57610	broad.mit.edu	37	chr16	67761665	67761665	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcctgtacctgcagcatctCtgtgtgggccaaattcttgc	9	12	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67761665	G	G	67761665	3	3	179	1	0	0	0	0	1	0	0	0	13134	922	32	4	265	4	RANBP10	16	67761665	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	51814	67761665	22593088	793	145292											
SLC12A4	6560	broad.mit.edu	37	chr16	68002416	68002416	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaggttgtcatagtcgccgCgcctcggcccgtccactggc	13	16	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68002416	T	T	68002416	3	4	179	1	0	0	0	0	1	0	0	0	14498	768	27	4	3439	4	SLC12A4	16	68002416	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	240751	68002416	22352337	794	145293											
DPEP3	64180	broad.mit.edu	37	chr16	68014020	68014020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacgagtgggaaactccgCatcagggcctgcgcgcgacc	13	15	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68014020	T	T	68014020	3	4	179	1	0	0	0	0	1	0	0	0	4755	710	25	4	1242	4	DPEP3	16	68014020	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	11604	68014020	22340733	795	145294											
DPEP3	64180	broad.mit.edu	37	chr16	68014111	68014111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggcgctggggacacccGgcgtggtgaagaggctgggg	22	8	0	3	rs138005567	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68014111	T	T	68014111	3	4	179	1	0	0	0	0	1	0	0	0	4755	1116	39	1	1333	1	DPEP3	16	68014111	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	91	68014111	22340642	796	145295											
DPEP2	64174	broad.mit.edu	37	chr16	68026050	68026050	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgctccagggtgaggcgcAgggcatcccggtcctgggtc	16	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68026050	G	G	68026050	3	3	179	1	0	0	0	0	1	0	0	0	4754	188	7	5	1055	5	DPEP2	16	68026050	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	11939	68026050	22328703	797	145296											
SNTB2	6645	broad.mit.edu	37	chr16	69279458	69279458	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttagttatcatttattaTaggaagcaaaattactaacc	4	6	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69279458	C	C	69279458	1	2	179	0	1	0	0	0	0	0	0	0	14987	1421	49	5		5	SNTB2	16	69279458	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1253408	69279458	21075295	798	145297											
CALB2	794	broad.mit.edu	37	chr16	71417337	71417337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaagctccaggaatacaCccaaaccatagtgagtgaac	8	13	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71417337	A	A	71417337	3	1	179	1	0	0	0	0	1	0	0	0	2600	507	18	3	489	3	CALB2	16	71417337	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	2137879	71417337	18937416	799	145298											
AP1G1	164	broad.mit.edu	37	chr16	71808351	71808351	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagttaacagttgttagaaGaaagaaaagtaagacttact	9	3	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71808351	A	A	71808351	1	1	179	0	1	0	0	0	0	0	0	0	734	957	33	4		4	AP1G1	16	71808351	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	391014	71808351	18546402	800	145299											
ZNF821	55565	broad.mit.edu	37	chr16	71894647	71894647	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gactccagccctgccttattCttttcctatgaggccagtgg	9	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71894647	G	G	71894647	1	3	179	0	1	0	0	0	0	0	0	0	18307	928	32	4		4	ZNF821	16	71894647	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	86296	71894647	18460106	801	145300											
WDR59	79726	broad.mit.edu	37	chr16	74982429	74982429	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactcaccaacagcagacaGtgcaacagtaggtttccttg	8	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74982429	A	A	74982429	2	1	179	1	0	0	0	0	0	0	0	1	17435	1020	36	4		4	WDR59	16	74982429	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	3087782	74982429	15372324	802	145301											
CNTNAP4	85445	broad.mit.edu	37	chr16	76573767	76573767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtaatgtagtaaattcaGcagaagcaatcattttaatg	9	4	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76573767	T	T	76573767	1	4	179	0	1	0	0	0	0	0	0	0	3681	986	34	3		3	CNTNAP4	16	76573767	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1591338	76573767	13780986	803	145302											
CBFA2T3	863	broad.mit.edu	37	chr16	88968122	88968122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaagtgcaaaggccagggCccgcagccccacggttccca	12	16	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88968122	A	A	88968122	1	1	179	0	1	0	0	0	0	0	0	0	2724	754	26	3		3	CBFA2T3	16	88968122	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	12394355	88968122	1386631	804	145303											
TM4SF5	9032	broad.mit.edu	37	chr17	4684169	4684169	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaaaccgctgcagggtaaGatccagattaagaaggaatt	12	6	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4684169	A	A	4684169	1	1	179	0	1	0	0	0	0	0	0	0	16094	957	33	4		4	TM4SF5	17	4684169	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08		4684169	76511041	805	145304											
C17orf107	100130311	broad.mit.edu	37	chr17	4804508	4804508	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgggacgggggcacggtcaGctggctgtcagagcggggcg	22	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4804508	C	C	4804508	1	2	179	0	1	0	0	0	0	0	0	0	1867	986	34	4		4	C17orf107	17	4804508	3'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	120339	4804508	76390702	806	145305											
TMEM95	339168	broad.mit.edu	37	chr17	7259314	7259314	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtgagcagctcatccattCacacccccaccccttccttg	6	18	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7259314	T	T	7259314	1	4	179	0	1	0	0	0	0	0	0	0	16346	841	29	4		4	TMEM95	17	7259314	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2454806	7259314	73935896	807	145306											
ATP1B2	482	broad.mit.edu	37	chr17	7557847	7557847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcccgcctcaacctccCtagtagttgggactacagtc	7	16	1	0	rs138128532	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7557847	A	A	7557847	1	1	179	0	1	0	0	0	0	0	0	0	1137	696	24	2		2	ATP1B2	17	7557847	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	298533	7557847	73637363	808	145307											
TP53	7157	broad.mit.edu	37	chr17	7578474	7578474	+	Frame_Shift_Del	DEL	C	-	-													gcgcggacgcgggtgccgggCgggggtgtggaatcaaccca							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7578474	-	-	7578474	7	5	179	1	0	1	0	1	0	0	0	0	16505	755	27	0	842	0	TP53	17	7578474	Frame_Shift_Del	DEL	C	TCGA-55-5899-01A-11D-1625-08	20627	7578474	73616736	809	145308											
CNTROB	116840	broad.mit.edu	37	chr17	7851702	7851702	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagtcctgagtgtggatcCagtacaggcacttacagtcc	11	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7851702	T	T	7851702	1	4	179	0	1	0	0	0	0	0	0	0	3683	609	21	4		4	CNTROB	17	7851702	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	273228	7851702	73343508	810	145309											
MYH1	4619	broad.mit.edu	37	chr17	10398275	10398275	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccagtttctggatctgcttCttcccacccttcagggccag	8	15	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10398275	T	T	10398275	2	4	179	1	0	0	0	0	0	0	0	1	10123	912	32	4		4	MYH1	17	10398275	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	2546573	10398275	70796935	811	145310											
MYH1	4619	broad.mit.edu	37	chr17	10409210	10409210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccagcacaccgttacacCtcagctgatgcaggacaagc	8	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10409210	A	A	10409210	3	1	179	1	0	0	0	0	1	0	0	0	10123	681	24	2	3814	2	MYH1	17	10409210	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	10935	10409210	70786000	812	145311											
MAP2K3	5606	broad.mit.edu	37	chr17	21215323	21215323	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctgctgggatgtggtagGgagatcagctgtgcagcttt	16	6	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21215323	A	A	21215323	1	1	179	0	1	0	0	0	0	0	0	0	9330	1247	43	4		4	MAP2K3	17	21215323	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	10806113	21215323	59979887	813	145312											
KCNJ12	3768	broad.mit.edu	37	chr17	21319542	21319542	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggacgactttgagatcgtGgtcatcctggaaggcatggt	14	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21319542	T	T	21319542	2	4	179	1	0	0	0	0	0	0	0	1	8116	1335	47	2		2	KCNJ12	17	21319542	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	104219	21319542	59875668	814	145313											
PROCA1	147011	broad.mit.edu	37	chr17	27030878	27030878	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccgggcttttcttcttagTcaactggcctttcttggctt	8	11	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27030878	C	C	27030878	3	2	179	1	0	0	0	0	1	0	0	0	12652	1667	58	5	305	5	PROCA1	17	27030878	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	5711336	27030878	54164332	815	145314											
PHF12	57649	broad.mit.edu	37	chr17	27277024	27277024	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtcaggggcaggccgggTgaaggaatgcgcagagaagg	20	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27277024	G	G	27277024	1	3	179	0	1	0	0	0	0	0	0	0	11918	1711	59	5		5	PHF12	17	27277024	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	246146	27277024	53918186	816	145315											
MYO18A	399687	broad.mit.edu	37	chr17	27493223	27493223	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acgccgacaggcctggccctCggggccccgatccagcatgg	14	17	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27493223	T	T	27493223	3	4	179	1	0	0	0	0	1	0	0	0	10159	893	31	4	5592	4	MYO18A	17	27493223	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	216199	27493223	53701987	817	145316											
TMIGD1	388364	broad.mit.edu	37	chr17	28651849	28651849	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attacctttaacaatcaggtGaaagtccaagctctccgttt	6	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28651849	T	T	28651849	3	4	179	1	0	0	0	0	1	0	0	0	16353	1290	45	3	179	3	TMIGD1	17	28651849	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1158626	28651849	52543361	818	145317											
LRRC37B	114659	broad.mit.edu	37	chr17	30376930	30376931	+	Intron	DNP	GG	TT	TT													aacctgtaagctactcaactGgcatactggggttttgaaaa							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30376931	TT	TT	30376930	1	4	179	0	1	0	0	0	0	0	0	0	9081	1363	47	2		2	LRRC37B	17	30376930	Intron	DNP	GG	TCGA-55-5899-01A-11D-1625-08	1725081	30376930	50818280	819	145318											
ZNF207	7756	broad.mit.edu	37	chr17	30696361	30696361	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcaacgtaatcttcctcgGccaggacaggcccccatcgg	9	15	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30696361	T	T	30696361	2	4	179	1	0	0	0	0	0	0	0	1	17891	1190	42	3		3	ZNF207	17	30696361	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	319431	30696361	50498849	820	145319											
ACCN1	40	broad.mit.edu	37	chr17	32364844	32364844	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttactaccggctttggCgggaactgcacttcagtagc	13	10	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32364844	A	A	32364844	1	1	179	0	1	0	0	0	0	0	0	0	128	783	27	3		3	ACCN1	17	32364844	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1668483	32364844	48830366	821	145320											
DUSP14	11072	broad.mit.edu	37	chr17	35872430	35872430	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcatggcccctcggatgaTttccgagggagacataggag	13	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35872430	C	C	35872430	3	2	179	1	0	0	0	0	1	0	0	0	4854	1493	52	5	58	5	DUSP14	17	35872430	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	3507586	35872430	45322780	822	145321											
PIP4K2B	8396	broad.mit.edu	37	chr17	36936677	36936677	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcttccaacccatcctcTgcagcccaggcttgggactc	7	19	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36936677	C	C	36936677	1	2	179	0	1	0	0	0	0	0	0	0	12032	1595	55	5		5	PIP4K2B	17	36936677	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1064247	36936677	44258533	823	145322											
PLXDC1	57125	broad.mit.edu	37	chr17	37226180	37226180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagccaggatgatggccgCcacgaggaggactgccagca	14	13	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37226180	A	A	37226180	3	1	179	1	0	0	0	0	1	0	0	0	12212	739	26	3	198	3	PLXDC1	17	37226180	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	289503	37226180	43969030	824	145323											
KRT25	147183	broad.mit.edu	37	chr17	38906520	38906520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatttaatatttagtattcAtgataataaatgcatgcagc	5	4	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38906520	G	G	38906520	1	3	179	0	1	0	0	0	0	0	0	0	8533	232	8	5		5	KRT25	17	38906520	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	1680340	38906520	42288690	825	145324											
GHDC	84514	broad.mit.edu	37	chr17	40345091	40345091	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaggaagccagtttccCaagagtttcaggcaagactg	11	11	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40345091	T	T	40345091	1	4	179	0	1	0	0	0	0	0	0	0	6433	609	21	4		4	GHDC	17	40345091	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1438571	40345091	40850119	826	145325											
ATP6V0A1	535	broad.mit.edu	37	chr17	40666370	40666370	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcgtgaagagcttggcggGaggtttggtgctgttcttct	17	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40666370	A	A	40666370	3	1	179	1	0	0	0	0	1	0	0	0	1172	1174	41	4	2411	4	ATP6V0A1	17	40666370	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	321279	40666370	40528840	827	145326											
TUBG2	27175	broad.mit.edu	37	chr17	40818413	40818413	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggggccccgccagcatcCaggtggccctgtcgaggaag	16	14	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40818413	T	T	40818413	4	4	179	1	0	0	0	0	0	1	0	0	16891	595	21	4	1107	4	TUBG2	17	40818413	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	152043	40818413	40376797	828	145327											
RUNDC1	146923	broad.mit.edu	37	chr17	41142924	41142924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcacctgatgcggcgaGcgctggccgtgctccagatc	15	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41142924	T	T	41142924	3	4	179	1	0	0	0	0	1	0	0	0	13853	971	34	3	1051	3	RUNDC1	17	41142924	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	324511	41142924	40052286	829	145328											
RUNDC3A	10900	broad.mit.edu	37	chr17	42393898	42393898	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctctaccggaggtaagccCcagccaggtggggcttgggc	16	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42393898	T	T	42393898	1	4	179	0	1	0	0	0	0	0	0	0	13855	638	22	4		4	RUNDC3A	17	42393898	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1250974	42393898	38801312	830	145329											
OSBPL7	114881	broad.mit.edu	37	chr17	45886173	45886173	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacaaagccccagctctgTactctgtggagggagtgaac	13	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45886173	C	C	45886173	1	2	179	0	1	0	0	0	0	0	0	0	11376	1653	57	5		5	OSBPL7	17	45886173	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	3492275	45886173	35309037	831	145330											
CALCOCO2	10241	broad.mit.edu	37	chr17	46930408	46930408	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggatggttatgtgggagggAgcctatagggatgtagaaga	18	2	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46930408	T	T	46930408	1	4	179	0	1	0	0	0	0	0	0	0	2604	319	11	5		5	CALCOCO2	17	46930408	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	1044235	46930408	34264802	832	145331											
NXPH3	11248	broad.mit.edu	37	chr17	47656735	47656735	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggagaccatctggacaCcgggcagggaaggggttggg	19	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47656735	A	A	47656735	1	1	179	0	1	0	0	0	0	0	0	0	10887	522	18	3		3	NXPH3	17	47656735	3'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	726327	47656735	33538475	833	145332											
SAMD14	201191	broad.mit.edu	37	chr17	48202960	48202960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccatcccacatctgctccCatgcacccaacacctgccgc	5	21	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48202960	A	A	48202960	1	1	179	0	1	0	0	0	0	0	0	0	13930	609	21	2		2	SAMD14	17	48202960	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	546225	48202960	32992250	834	145333											
ACSF2	80221	broad.mit.edu	37	chr17	48538812	48538812	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctcaggccctcagccccAggatcaaaccagtgccttgt	8	18	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48538812	T	T	48538812	1	4	179	0	1	0	0	0	0	0	0	0	175	203	7	5		5	ACSF2	17	48538812	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	335852	48538812	32656398	835	145334											
CA10	56934	broad.mit.edu	37	chr17	49713356	49713356	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctatattaagcccctgtaGtaaatatgcatcatctagag	6	9	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49713356	T	T	49713356	3	4	179	1	0	0	0	0	1	0	0	0	2537	1020	36	3	349	3	CA10	17	49713356	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1174544	49713356	31481854	836	145335											
CA10	56934	broad.mit.edu	37	chr17	50008332	50008332	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttcaactttaccatggaAgcaatatggtggcttacctt	7	9	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50008332	T	T	50008332	1	4	179	0	1	0	0	0	0	0	0	0	2537	87	3	5		5	CA10	17	50008332	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	294976	50008332	31186878	837	145336											
KIF2B	84643	broad.mit.edu	37	chr17	51900706	51900706	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctctggcgccctcttcGgccatcagggaccagcgtac	12	15	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51900706	T	T	51900706	2	4	179	1	0	0	0	0	0	0	0	1	8368	1103	39	1		1	KIF2B	17	51900706	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	1892374	51900706	29294504	838	145337											
DYNLL2	140735	broad.mit.edu	37	chr17	56164475	56164475	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgaccggaaggcagtgatCaagaacgcagacatgtctga	12	9	3	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56164475	T	T	56164475	2	4	179	1	0	0	0	0	0	0	0	1	4889	816	29	4		4	DYNLL2	17	56164475	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	4263769	56164475	25030735	839	145338											
BZRAP1	9256	broad.mit.edu	37	chr17	56397414	56397414	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcctgggccctgagggagGagatgcaactcagccagcct	14	13	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56397414	C	C	56397414	1	2	179	0	1	0	0	0	0	0	0	0	1587	1189	41	4		4	BZRAP1	17	56397414	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	232939	56397414	24797796	840	145339											
BZRAP1	9256	broad.mit.edu	37	chr17	56404911	56404911	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggacatggtgagagaccCccaccttgcagaccccagcc	12	15	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56404911	T	T	56404911	1	4	179	0	1	0	0	0	0	0	0	0	1587	638	22	4		4	BZRAP1	17	56404911	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	7497	56404911	24790299	841	145340											
MTMR4	9110	broad.mit.edu	37	chr17	56581269	56581269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcaggacctagggaagCagcccaatactagtgctttg	13	9	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56581269	A	A	56581269	1	1	179	0	1	0	0	0	0	0	0	0	10040	725	25	3		3	MTMR4	17	56581269	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	176358	56581269	24613941	842	145341											
TBX4	9496	broad.mit.edu	37	chr17	59543430	59543430	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaggctggagtccactGcctggaactggctgtgcgga	15	11	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59543430	T	T	59543430	1	4	179	0	1	0	0	0	0	0	0	0	15782	1334	46	3		3	TBX4	17	59543430	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2962161	59543430	21651780	843	145342											
MED13	9969	broad.mit.edu	37	chr17	60112780	60112780	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatgaagtcaaataaggatCtttcaataaaagatcaaata	5	4	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60112780	A	A	60112780	1	1	179	0	1	0	0	0	0	0	0	0	9523	928	32	3		3	MED13	17	60112780	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	569350	60112780	21082430	844	145343											
MRC2	9902	broad.mit.edu	37	chr17	60753982	60753982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgagccccagggcttccccAtaaacagatcattggtgcac	9	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60753982	G	G	60753982	1	3	179	0	1	0	0	0	0	0	0	0	9852	232	8	5		5	MRC2	17	60753982	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	641202	60753982	20441228	845	145344											
SMARCD2	6603	broad.mit.edu	37	chr17	61910810	61910810	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacctgtgtcagactgtgcCcccaaagcttacatgcaagc	9	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61910810	T	T	61910810	1	4	179	0	1	0	0	0	0	0	0	0	14892	638	22	4		4	SMARCD2	17	61910810	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1156828	61910810	19284400	846	145345											
WIPI1	55062	broad.mit.edu	37	chr17	66425071	66425071	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actagcagccgtggcaacttCtggatcctaagggccaagga	12	11	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66425071	G	G	66425071	3	3	179	1	0	0	0	0	1	0	0	0	17497	912	32	4	384	4	WIPI1	17	66425071	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	4514261	66425071	14770139	847	145346											
ABCA9	10350	broad.mit.edu	37	chr17	66992188	66992188	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagtatagcgtcattaaaGtgtaccaatctgaattttag	7	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66992188	C	C	66992188	1	2	179	0	1	0	0	0	0	0	0	0	39	1044	36	4		4	ABCA9	17	66992188	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	567117	66992188	14203022	848	145347											
ABCA9	10350	broad.mit.edu	37	chr17	67024558	67024558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatgatccacctgcctcGgcttcccaaagtgctgggat	9	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67024558	T	T	67024558	1	4	179	0	1	0	0	0	0	0	0	0	39	1131	39	1		1	ABCA9	17	67024558	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	32370	67024558	14170652	849	145348											
ABCA5	23461	broad.mit.edu	37	chr17	67256427	67256427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatagttaaaaccataggaCcaaaccattcttaaggtaca	5	9	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67256427	A	A	67256427	1	1	179	0	1	0	0	0	0	0	0	0	35	522	18	3		3	ABCA5	17	67256427	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	231869	67256427	13938783	850	145349											
ABCA5	23461	broad.mit.edu	37	chr17	67290774	67290774	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tactttaaatactatggcctGaatactaggaaaactactta	5	7	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67290774	C	C	67290774	1	2	179	0	1	0	0	0	0	0	0	0	35	1305	45	4		4	ABCA5	17	67290774	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	34347	67290774	13904436	851	145350											
RAB37	326624	broad.mit.edu	37	chr17	72741181	72741181	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcctggagaccagcgccaAgactggcatgaatgtggagt	13	10	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72741181	G	G	72741181	3	3	179	1	0	0	0	0	1	0	0	0	13035	72	3	5	857	5	RAB37	17	72741181	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	5450407	72741181	8454029	852	145351											
C17orf56	146705	broad.mit.edu	37	chr17	79205613	79205613	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacagtgtggtgcctccgaGacctctcccacatatctggc	11	14	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79205613	C	C	79205613	1	2	179	0	1	0	0	0	0	0	0	0	1880	957	33	4		4	C17orf56	17	79205613	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	6464432	79205613	1989597	853	145352											
TSPAN10	83882	broad.mit.edu	37	chr17	79612618	79612619	+	Missense_Mutation	DNP	TG	CT	CT													tccagctcgggctgaggtgcTgcggagctgcctcctaccag							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	79612619	CT	CT	79612618	3	2	179	1	0	0	0	0	1	0	0	0	16759	1580	55	5	643	5	TSPAN10	17	79612618	Missense_Mutation	DNP	TG	TCGA-55-5899-01A-11D-1625-08	407005	79612618	1582592	854	145353											
SLC25A10	1468	broad.mit.edu	37	chr17	79682776	79682776	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttggtcaacgtcaggttgGtgttcccccaccccacctgc	9	16	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79682776	A	A	79682776	1	1	179	0	1	0	0	0	0	0	0	0	14586	1276	44	4		4	SLC25A10	17	79682776	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	70158	79682776	1512434	855	145354											
LAMA1	284217	broad.mit.edu	37	chr18	6973142	6973142	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccaggggatttacttgTttttgttggtgacttttgat	11	5	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6973142	C	C	6973142	3	2	179	1	0	0	0	0	1	0	0	0	8677	1725	60	5	2607	5	LAMA1	18	6973142	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08		6973142	71104106	856	145355											
C18orf1	753	broad.mit.edu	37	chr18	13387586	13387586	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagccgggcaggtgggccGcggatgctcccagaggccgg	20	12	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13387586	T	T	13387586	1	4	179	0	1	0	0	0	0	0	0	0	1912	1102	38	3		3	C18orf1	18	13387586	5'UTR	SNP	G	TCGA-55-5899-01A-11D-1625-08	6414444	13387586	64689662	857	145356											
ANKRD29	147463	broad.mit.edu	37	chr18	21229076	21229076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtccacgtccacccggcCgctgttcaacagcagcttca	9	17	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21229076	A	A	21229076	3	1	179	1	0	0	0	0	1	0	0	0	657	652	23	1	838	1	ANKRD29	18	21229076	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	7841490	21229076	56848172	858	145357											
ZNF521	25925	broad.mit.edu	37	chr18	22806774	22806774	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcggggcagcttccaccaTggttgagctgtccactgaga	14	11	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22806774	A	A	22806774	3	1	179	1	0	0	0	0	1	0	0	0	18092	1464	51	5	2847	5	ZNF521	18	22806774	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	1577698	22806774	55270474	859	145358											
CDH2	1000	broad.mit.edu	37	chr18	25593913	25593913	+	Intron	DEL	C	-	-													ggtcagttattataattataCcaaaaaggcaaaaaaaaacc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25593913	-	-	25593913	6	5	179	0	1	1	0	1	0	0	0	0	3135	522	18	0		0	CDH2	18	25593913	Intron	DEL	C	TCGA-55-5899-01A-11D-1625-08	2787139	25593913	52483335	860	145359											
DSC1	1823	broad.mit.edu	37	chr18	28711632	28711632	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatctccctgccccactccCttgacggactccaaggtctg	8	17	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28711632	T	T	28711632	2	4	179	1	0	0	0	0	0	0	0	1	4805	680	24	4		4	DSC1	18	28711632	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	3117719	28711632	49365616	861	145360											
DSG1	1828	broad.mit.edu	37	chr18	28934526	28934526	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttgccttcctcaggaaacAgagcccgttgttagtggaca	11	10	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28934526	T	T	28934526	2	4	179	1	0	0	0	0	0	0	0	1	4816	175	7	5		5	DSG1	18	28934526	Silent	SNP	A	TCGA-55-5899-01A-11D-1625-08	222894	28934526	49142722	862	145361											
C18orf34	374864	broad.mit.edu	37	chr18	30803087	30803087	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctcagtttctattaatgCatcaagggttttcttcccct	5	11	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30803087	T	T	30803087	3	4	179	1	0	0	0	0	1	0	0	0	1920	710	25	4	712	4	C18orf34	18	30803087	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1868561	30803087	47274161	863	145362											
C18orf34	374864	broad.mit.edu	37	chr18	30873090	30873090	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttataactcaaaacaaaaatCagtattttttatttctaata	1	5	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30873090	G	G	30873090	1	3	179	0	1	0	0	0	0	0	0	0	1920	841	29	4		4	C18orf34	18	30873090	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	70003	30873090	47204158	864	145363											
FHOD3	80206	broad.mit.edu	37	chr18	34323860	34323860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagccatggatcatggagCatgtggccccaggagcttca	12	11	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34323860	A	A	34323860	1	1	179	0	1	0	0	0	0	0	0	0	5940	725	25	3		3	FHOD3	18	34323860	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3450770	34323860	43753388	865	145364											
SLC14A2	8170	broad.mit.edu	37	chr18	43204880	43204880	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagtgaacttagcacaCtgaggaagtgccactgtcag	10	11	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43204880	G	G	43204880	1	3	179	0	1	0	0	0	0	0	0	0	14510	580	20	4		4	SLC14A2	18	43204880	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	8881020	43204880	34872368	866	145365											
SLC14A2	8170	broad.mit.edu	37	chr18	43221223	43221223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctacacaggcctctggagCtacaactgcgtcctctcctg	8	15	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43221223	A	A	43221223	3	1	179	1	0	0	0	0	1	0	0	0	14510	796	28	3	1067	3	SLC14A2	18	43221223	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	16343	43221223	34856025	867	145366											
MYO5B	4645	broad.mit.edu	37	chr18	47511002	47511002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagctcctgcaggttgctgGcaagcacagtgggacatcgc	13	11	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47511002	T	T	47511002	1	4	179	0	1	0	0	0	0	0	0	0	10173	1218	42	3		3	MYO5B	18	47511002	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4289779	47511002	30566246	868	145367											
MBD1	4152	broad.mit.edu	37	chr18	47802296	47802296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaggaggcaggtggagCaggccccacagtcttctgtt	15	11	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47802296	A	A	47802296	3	1	179	1	0	0	0	0	1	0	0	0	9434	710	25	3	1479	3	MBD1	18	47802296	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	291294	47802296	30274952	869	145368											
SMAD4	4089	broad.mit.edu	37	chr18	48573354	48573354	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtttttcactgtttccAaaggatcaaaattgcttcag	7	7	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48573354	C	C	48573354	1	2	179	0	1	0	0	0	0	0	0	0	14874	145	5	5		5	SMAD4	18	48573354	5'UTR	SNP	A	TCGA-55-5899-01A-11D-1625-08	771058	48573354	29503894	870	145369											
CDH20	28316	broad.mit.edu	37	chr18	59203554	59203554	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttgtttattggaggaGgaggtgacttttgtttctga	13	2	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59203554	A	A	59203554	1	1	179	0	1	0	0	0	0	0	0	0	3136	1015	35	4		4	CDH20	18	59203554	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	10630200	59203554	18873694	871	145370											
CDH7	1005	broad.mit.edu	37	chr18	63548088	63548088	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacctcgctttaaacgactCgcggacatgtatgggactgg	13	10	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63548088	A	A	63548088	2	1	179	1	0	0	0	0	0	0	0	1	3145	871	31	3		3	CDH7	18	63548088	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	4344534	63548088	14529160	872	145371											
MIER2	54531	broad.mit.edu	37	chr19	326348	326348	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgccaggttggggacacGgcagagccacggccgggatg	19	10	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	326348	A	A	326348	1	1	179	0	1	0	0	0	0	0	0	0	9674	1131	39	4		4	MIER2	19	326348	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08		326348	58802635	873	145372											
ELANE	1991	broad.mit.edu	37	chr19	855664	855664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgcctggccatgggctGgggccttctgggcaggaacc	17	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	855664	T	T	855664	3	4	179	1	0	0	0	0	1	0	0	0	5090	1357	47	2	481	2	ELANE	19	855664	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	529316	855664	58273319	874	145373											
GRIN3B	116444	broad.mit.edu	37	chr19	1004961	1004961	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgacctgctggagcggctGgcggaggacacgcccttcga	15	12	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1004961	A	A	1004961	2	1	179	1	0	0	0	0	0	0	0	1	6850	1335	47	4		4	GRIN3B	19	1004961	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	149297	1004961	58124022	875	145374											
AP3D1	8943	broad.mit.edu	37	chr19	2114305	2114305	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgctgtcggctaagggcctgGaggaggaatgaccgggccac	17	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2114305	C	C	2114305	1	2	179	0	1	0	0	0	0	0	0	0	748	1189	41	4		4	AP3D1	19	2114305	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1109344	2114305	57014678	876	145375											
LMNB2	84823	broad.mit.edu	37	chr19	2434013	2434013	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttccgcttactgcggccCaggcgcccggtggcggacaa	14	16	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2434013	A	A	2434013	2	1	179	1	0	0	0	0	0	0	0	1	8924	581	21	2		2	LMNB2	19	2434013	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	319708	2434013	56694970	877	145376											
SH3GL1	6455	broad.mit.edu	37	chr19	4400305	4400305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccggtactcggctcccgcCtgggcctgcgctcacctggc	13	19	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4400305	A	A	4400305	1	1	179	0	1	0	0	0	0	0	0	0	14363	696	24	2		2	SH3GL1	19	4400305	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1966292	4400305	54728678	878	145377											
KDM4B	23030	broad.mit.edu	37	chr19	5032934	5032934	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccacggcgcccagaacccCagctgtaaaatcatgacgtt	9	14	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5032934	T	T	5032934	2	4	179	1	0	0	0	0	0	0	0	1	8199	581	21	4		4	KDM4B	19	5032934	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	632629	5032934	54096049	879	145378											
C3	718	broad.mit.edu	37	chr19	6682076	6682076	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcctgtgaaaaatccctccTggacccctctctccctgcag	7	17	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6682076	A	A	6682076	1	1	179	0	1	0	0	0	0	0	0	0	2226	1595	55	5		5	C3	19	6682076	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1649142	6682076	52446907	880	145379											
VAV1	7409	broad.mit.edu	37	chr19	6854203	6854203	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggagaaggtgaggtgcgGctcccatggagatctctcac	14	10	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6854203	T	T	6854203	1	4	179	0	1	0	0	0	0	0	0	0	17258	1218	42	3		3	VAV1	19	6854203	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	172127	6854203	52274780	881	145380											
MUC16	94025	broad.mit.edu	37	chr19	8962041	8962041	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagggaaggtctggggagaCaagggctggggtgagccacc	20	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8962041	T	T	8962041	1	4	179	0	1	0	0	0	0	0	0	0	10067	493	17	4		4	MUC16	19	8962041	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2107838	8962041	50166942	882	145381											
PDE4A	5141	broad.mit.edu	37	chr19	10577403	10577403	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggtctcgaactcctgacctCaaatgatccgactgcctcag	8	14	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10577403	G	G	10577403	1	3	179	0	1	0	0	0	0	0	0	0	11733	841	29	4		4	PDE4A	19	10577403	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1615362	10577403	48551580	883	145382											
KEAP1	9817	broad.mit.edu	37	chr19	10600330	10600330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtccccacccacctgcccCgcttcggatggtgttcattg	9	18	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10600330	A	A	10600330	3	1	179	1	0	0	0	0	1	0	0	0	8211	652	23	1	361	1	KEAP1	19	10600330	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	22927	10600330	48528653	884	145383											
ILF3	3609	broad.mit.edu	37	chr19	10800252	10800252	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttttgagtttttgcagttCagtatccctctgtctattca	7	8	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10800252	T	T	10800252	1	4	179	0	1	0	0	0	0	0	0	0	7782	841	29	4		4	ILF3	19	10800252	3'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	199922	10800252	48328731	885	145384											
DNM2	1785	broad.mit.edu	37	chr19	10893611	10893612	+	Intron	INS	-	A	A													ggctcacctagctttgccccINStgacctgactgcctctcccc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10893612	A	A	10893611	6	5	179	0	1	1	1	0	0	0	0	0	4712	696	24	0		0	DNM2	19	10893611	Intron	INS	-	TCGA-55-5899-01A-11D-1625-08	93359	10893611	48235372	886	145385											
CACNA1A	773	broad.mit.edu	37	chr19	13365936	13365936	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataagcacgatggtgttgagGgcgatcatggccatgatcgt	14	7	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13365936	A	A	13365936	2	1	179	1	0	0	0	0	0	0	0	1	2564	1219	43	4		4	CACNA1A	19	13365936	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2472325	13365936	45763047	887	145386											
OR10H5	284433	broad.mit.edu	37	chr19	15905665	15905665	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaaggtccccagtctccGgaaggagacaccttgatggg	12	13	1	2	rs138375774		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15905665	T	T	15905665	2	4	179	1	0	0	0	0	0	0	0	1	11003	1103	39	1		1	OR10H5	19	15905665	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	2539729	15905665	43223318	888	145387											
OR10H4	126541	broad.mit.edu	37	chr19	16059805	16059805	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttgtttctgatctcaccAgatacagtatccatgcctag	6	10	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16059805	T	T	16059805	1	4	179	0	1	0	0	0	0	0	0	0	11002	203	7	5		5	OR10H4	19	16059805	5'Flank	SNP	A	TCGA-55-5899-01A-11D-1625-08	154140	16059805	43069178	889	145388											
ZNF676	163223	broad.mit.edu	37	chr19	22362793	22362793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttcttatgataactaaCagttgaggatgacttaaaag	7	4	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22362793	A	A	22362793	3	1	179	1	0	0	0	0	1	0	0	0	18210	478	17	3	44	3	ZNF676	19	22362793	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	6302988	22362793	36766190	890	145389											
TSHZ3	57616	broad.mit.edu	37	chr19	31768533	31768533	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgactgactgcagggcgctCaaagggttaacaaaaggctg	13	8	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31768533	G	G	31768533	3	3	179	1	0	0	0	0	1	0	0	0	16750	825	29	4	1083	4	TSHZ3	19	31768533	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	9405740	31768533	27360450	891	145390											
ANKRD27	84079	broad.mit.edu	37	chr19	33090556	33090556	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttaccatggattactttTgacaaagccgggctttagaa	9	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33090556	A	A	33090556	1	1	179	0	1	0	0	0	0	0	0	0	655	1827	63	5		5	ANKRD27	19	33090556	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1322023	33090556	26038427	892	145391											
RASGRP4	115727	broad.mit.edu	37	chr19	38901750	38901750	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaccggtgtgctctaggtCttaccacagctggcatgggg	14	11	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38901750	G	G	38901750	1	3	179	0	1	0	0	0	0	0	0	0	13185	928	32	4		4	RASGRP4	19	38901750	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	5811194	38901750	20227233	893	145392											
RYR1	6261	broad.mit.edu	37	chr19	38995479	38995479	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctatgtggatgcctcatactCatctaaggcagagaaaaagg	10	8	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38995479	G	G	38995479	4	3	179	1	0	0	0	0	0	1	0	0	13879	838	29	4	8361	4	RYR1	19	38995479	Nonsense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	93729	38995479	20133504	894	145393											
MAP4K1	11184	broad.mit.edu	37	chr19	39090638	39090638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagagctgcagggaatgGgagagatggctctggtgaca	18	5	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39090638	T	T	39090638	1	4	179	0	1	0	0	0	0	0	0	0	9351	1247	43	2		2	MAP4K1	19	39090638	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	95159	39090638	20038345	895	145394											
ACTN4	81	broad.mit.edu	37	chr19	39199959	39199959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccgggtctctccctctgGgccagccctgcctccctcct	8	22	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39199959	T	T	39199959	1	4	179	0	1	0	0	0	0	0	0	0	207	1247	43	2		2	ACTN4	19	39199959	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	109321	39199959	19929024	896	145395											
SELV	348303	broad.mit.edu	37	chr19	40009471	40009471	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgggggagaggggggtggtCagggatctgagatccccaag	20	7	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40009471	A	A	40009471	1	1	179	0	1	0	0	0	0	0	0	0	14136	841	29	3		3	SELV	19	40009471	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	809512	40009471	19119512	897	145396											
LGALS13	29124	broad.mit.edu	37	chr19	40093182	40093182	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagaagactggactcaattCtgaaggtcgccaagaaggag	12	8	3	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40093182	T	T	40093182	1	4	179	0	1	0	0	0	0	0	0	0	8812	928	32	4		4	LGALS13	19	40093182	5'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	83711	40093182	19035801	898	145397											
ATP1A3	478	broad.mit.edu	37	chr19	42479737	42479737	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccttgctggtctcaggcctCcggtagtgaccctggtctcc	11	16	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42479737	T	T	42479737	1	4	179	0	1	0	0	0	0	0	0	0	1134	870	30	4		4	ATP1A3	19	42479737	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2386555	42479737	16649246	899	145398											
PSG8	440533	broad.mit.edu	37	chr19	43269863	43269863	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcccggggcaggagcacctCtcaggttcatgggcggggtc	16	12	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43269863	A	A	43269863	1	1	179	0	1	0	0	0	0	0	0	0	12767	928	32	3		3	PSG8	19	43269863	5'Flank	SNP	C	TCGA-55-5899-01A-11D-1625-08	790126	43269863	15859120	900	145399											
IGFL1	374918	broad.mit.edu	37	chr19	46733709	46733709	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtgctgcccctggaccttCatggtgaagctgataaacca	10	12	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46733709	A	A	46733709	3	1	179	1	0	0	0	0	1	0	0	0	7656	825	29	3	268	3	IGFL1	19	46733709	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3463846	46733709	12395274	901	145400											
POLD1	5424	broad.mit.edu	37	chr19	50906596	50906596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgggtgggtgtctgtgGgtctgggtgggcccctgtgc	21	8	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50906596	T	T	50906596	1	4	179	0	1	0	0	0	0	0	0	0	12285	1247	43	2		2	POLD1	19	50906596	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	4172887	50906596	8222387	902	145401											
KLK10	5655	broad.mit.edu	37	chr19	51522352	51522352	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgccagagcccgggcgccaGaggcggcggagaggtggagg	21	11	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51522352	C	C	51522352	3	2	179	1	0	0	0	0	1	0	0	0	8469	942	33	4	815	4	KLK10	19	51522352	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	615756	51522352	7606631	903	145402											
KLK13	26085	broad.mit.edu	37	chr19	51561823	51561823	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtctttgccaccctcttttGtgccggcacacaacatgttg	8	13	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51561823	C	C	51561823	3	2	179	1	0	0	0	0	1	0	0	0	8472	1377	48	4	224	4	KLK13	19	51561823	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	39471	51561823	7567160	904	145403											
LILRB1	10859	broad.mit.edu	37	chr19	55144826	55144826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagctcagaccctgcccCaggagagctctgggctggga	13	14	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55144826	A	A	55144826	1	1	179	0	1	0	0	0	0	0	0	0	8862	609	21	2		2	LILRB1	19	55144826	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3583003	55144826	3984157	905	145404											
LILRB4	11006	broad.mit.edu	37	chr19	55176017	55176017	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagagctctgggcagggatgGagggagaggggctcagccag	21	7	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55176017	T	T	55176017	1	4	179	0	1	0	0	0	0	0	0	0	8865	1189	41	3		3	LILRB4	19	55176017	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	31191	55176017	3952966	906	145405											
KIR2DL3	3804	broad.mit.edu	37	chr19	55263328	55263328	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaggcagcagccacagaggGaggactttctagagagagca	14	9	1	3	rs145361319	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55263328	C	C	55263328	1	2	179	0	1	0	0	0	0	0	0	0	8388	1189	41	4		4	KIR2DL3	19	55263328	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	87311	55263328	3865655	907	145406											
ZNF772	400720	broad.mit.edu	37	chr19	57987892	57987892	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcttctccagagtcctcaGacccaagagatcggagagta	12	11	2	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57987892	T	T	57987892	1	4	179	0	1	0	0	0	0	0	0	0	18274	957	33	3		3	ZNF772	19	57987892	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2724564	57987892	1141091	908	145407											
C19orf18	147685	broad.mit.edu	37	chr19	58473089	58473089	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactgtctacatggtcaggCcatttcctggagtaaggagt	11	9	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58473089	T	T	58473089	1	4	179	0	1	0	0	0	0	0	0	0	1929	754	26	4		4	C19orf18	19	58473089	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	485197	58473089	655894	909	145408											
NOP56	10528	broad.mit.edu	37	chr20	2636664	2636664	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgcagatccttggggctGaaaaggccctgttcaggtac	13	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2636664	A	A	2636664	3	1	179	1	0	0	0	0	1	0	0	0	10634	1291	45	4	1024	4	NOP56	20	2636664	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08		2636664	60388856	910	145409											
ADAM33	80332	broad.mit.edu	37	chr20	3652068	3652068	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcctcgggctctcacccCgtggctgtggcaggcagtca	12	16	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3652068	A	A	3652068	3	1	179	1	0	0	0	0	1	0	0	0	250	652	23	1	484	1	ADAM33	20	3652068	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1015404	3652068	59373452	911	145410											
RASSF2	9770	broad.mit.edu	37	chr20	4771142	4771142	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggagaagcggtggcgtctGattcgccgctggtcactagg	16	9	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4771142	C	C	4771142	3	2	179	1	0	0	0	0	1	0	0	0	13194	1280	45	4	512	4	RASSF2	20	4771142	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1119074	4771142	58254378	912	145411											
HAO1	54363	broad.mit.edu	37	chr20	7886991	7886991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcctaaaataagaaatGcataaaatgagaaatttgcc	5	6	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7886991	T	T	7886991	1	4	179	0	1	0	0	0	0	0	0	0	7017	1334	46	3		3	HAO1	20	7886991	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3115849	7886991	55138529	913	145412											
PLCB1	23236	broad.mit.edu	37	chr20	8665849	8665849	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgaagtgcctctgagaacTctggggttccaccactaaag	11	11	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8665849	C	C	8665849	1	2	179	0	1	0	0	0	0	0	0	0	12122	1566	54	5		5	PLCB1	20	8665849	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	778858	8665849	54359671	914	145413											
PLCB4	5332	broad.mit.edu	37	chr20	9346313	9346313	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctttgacaaatgctatattCagtttgtaaaaatcatttat	5	5	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9346313	A	A	9346313	1	1	179	0	1	0	0	0	0	0	0	0	12125	841	29	3		3	PLCB4	20	9346313	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	680464	9346313	53679207	915	145414											
PAK7	57144	broad.mit.edu	37	chr20	9524839	9524839	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgatctgccccaggggTggccaggctcccacctgcca	13	16	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9524839	G	G	9524839	1	3	179	0	1	0	0	0	0	0	0	0	11499	1711	59	5		5	PAK7	20	9524839	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	178526	9524839	53500681	916	145415											
SNAP25	6616	broad.mit.edu	37	chr20	10286767	10286767	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagttctgtttcttttcccCcttttctaggctgattccaa	6	11	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10286767	G	G	10286767	1	3	179	0	1	0	0	0	0	0	0	0	14944	638	22	4		4	SNAP25	20	10286767	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	761928	10286767	52738753	917	145416											
XRN2	22803	broad.mit.edu	37	chr20	21329033	21329033	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctgcaagtggtaattttCtacctccatcatggcggaag	10	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21329033	A	A	21329033	3	1	179	1	0	0	0	0	1	0	0	0	17587	912	32	3	1902	3	XRN2	20	21329033	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	11042266	21329033	41696487	918	145417											
CST11	140880	broad.mit.edu	37	chr20	23433431	23433432	+	Missense_Mutation	DNP	CC	AA	AA													aacaggagctgtagggcctgCcagggctcagccatcatcct							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	23433432	AA	AA	23433431	3	1	179	1	0	0	0	0	1	0	0	0	4005	740	26	3	410	3	CST11	20	23433431	Missense_Mutation	DNP	CC	TCGA-55-5899-01A-11D-1625-08	2104398	23433431	39592089	919	145418											
CST2	1470	broad.mit.edu	37	chr20	23807252	23807252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccaggccagggccacagCctgggtggccagcaggagca	16	14	0	0	rs148108132	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23807252	A	A	23807252	3	1	179	1	0	0	0	0	1	0	0	0	4006	739	26	3	391	3	CST2	20	23807252	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	373821	23807252	39218268	920	145419											
ABHD12	26090	broad.mit.edu	37	chr20	25349327	25349327	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtctttggaatcttgtcTgcaaacaggttgaaggagac	12	7	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25349327	G	G	25349327	1	3	179	0	1	0	0	0	0	0	0	0	76	1595	55	5		5	ABHD12	20	25349327	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	1542075	25349327	37676193	921	145420											
C20orf160	140706	broad.mit.edu	37	chr20	30602724	30602724	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagggctttgtatcccccatCcgaaggctggtgttccccaa	10	14	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30602724	A	A	30602724	2	1	179	1	0	0	0	0	0	0	0	1	2115	845	30	3		3	C20orf160	20	30602724	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	5253397	30602724	32422796	922	145421											
HCK	3055	broad.mit.edu	37	chr20	30686834	30686834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccccatcaagtggacagCtcctgaagccatcaactttg	8	13	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30686834	A	A	30686834	3	1	179	1	0	0	0	0	1	0	0	0	7060	797	28	3	1326	3	HCK	20	30686834	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	84110	30686834	32338686	923	145422											
POFUT1	23509	broad.mit.edu	37	chr20	30804817	30804817	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttcctcctctaggcgtgaGaatcactcctgtgttacctt	7	12	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30804817	A	A	30804817	1	1	179	0	1	0	0	0	0	0	0	0	12278	933	33	4		4	POFUT1	20	30804817	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	117983	30804817	32220703	924	145423											
C20orf114	92747	broad.mit.edu	37	chr20	31893985	31893985	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcccagccatccctcagaGcctacttcaaaatctgcctc	4	18	4	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31893985	C	C	31893985	1	2	179	0	1	0	0	0	0	0	0	0	2104	986	34	4		4	C20orf114	20	31893985	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1089168	31893985	31131535	925	145424											
MYH7B	57644	broad.mit.edu	37	chr20	33582124	33582124	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggggcgctggctgcggccGaggccaagcgccaggaactg	19	12	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33582124	A	A	33582124	3	1	179	1	0	0	0	0	1	0	0	0	10134	1059	37	4	2844	4	MYH7B	20	33582124	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1688139	33582124	29443396	926	145425											
CTNNBL1	56259	broad.mit.edu	37	chr20	36374711	36374712	+	Intron	DNP	GG	AA	AA													tgaggaaatcgatttcccaaGgaaattgtgtgacagtatga							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36374712	AA	AA	36374711	1	1	179	0	1	0	0	0	0	0	0	0	4052	1015	35	4		4	CTNNBL1	20	36374711	Intron	DNP	GG	TCGA-55-5899-01A-11D-1625-08	2792587	36374711	26650809	927	145426											
PPP1R16B	26051	broad.mit.edu	37	chr20	37536601	37536601	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtccggggcagggcagccAggagtccctgtgtgtgctcc	17	12	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37536601	T	T	37536601	1	4	179	0	1	0	0	0	0	0	0	0	12467	203	7	5		5	PPP1R16B	20	37536601	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	1161890	37536601	25488919	928	145427											
DHX35	60625	broad.mit.edu	37	chr20	37623552	37623552	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgcctcccctttcctcctCtcctcacaaacacttttgtc	2	19	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37623552	G	G	37623552	1	3	179	0	1	0	0	0	0	0	0	0	4548	928	32	4		4	DHX35	20	37623552	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	86951	37623552	25401968	929	145428											
CHD6	84181	broad.mit.edu	37	chr20	40081486	40081486	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcctttcgtctgagtcgcTgtctaactctgaaaactcca	9	12	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40081486	A	A	40081486	3	1	179	1	0	0	0	0	1	0	0	0	3360	1580	55	5	4998	5	CHD6	20	40081486	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	2457934	40081486	22944034	930	145429											
SGK2	10110	broad.mit.edu	37	chr20	42196680	42196680	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcatttcttcttctgcttctCaagccgcagcctagggtggc	10	13	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42196680	G	G	42196680	1	3	179	0	1	0	0	0	0	0	0	0	14322	841	29	4		4	SGK2	20	42196680	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2115194	42196680	20828840	931	145430											
SGK2	10110	broad.mit.edu	37	chr20	42213633	42213633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gattttcttatgcgccagagGatgatgacatcttggattgc	11	7	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42213633	A	A	42213633	3	1	179	1	0	0	0	0	1	0	0	0	14322	1174	41	4	1307	4	SGK2	20	42213633	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	16953	42213633	20811887	932	145431											
GDAP1L1	78997	broad.mit.edu	37	chr20	42907638	42907638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtggctgtgccttcaccCtcgctgatgtcctcctggga	11	14	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42907638	A	A	42907638	3	1	179	1	0	0	0	0	1	0	0	0	6371	681	24	2	824	2	GDAP1L1	20	42907638	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	694005	42907638	20117882	933	145432											
RIMS4	140730	broad.mit.edu	37	chr20	43399960	43399960	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgtcctcaatggactcGtggctggcctggcgcagtgt	14	11	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43399960	A	A	43399960	2	1	179	1	0	0	0	0	0	0	0	1	13481	1136	40	4		4	RIMS4	20	43399960	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	492322	43399960	19625560	934	145433											
ZNF334	55713	broad.mit.edu	37	chr20	45131272	45131272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattcattacattcatttgGtttcctttcagtctgtctcc	4	11	5	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45131272	T	T	45131272	3	4	179	1	0	0	0	0	1	0	0	0	17977	1261	44	3	1340	3	ZNF334	20	45131272	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	1731312	45131272	17894248	935	145434											
SLC2A10	81031	broad.mit.edu	37	chr20	45353979	45353979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttccctggcctggctgGtcctgggccgcgctgtggtt	16	13	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45353979	T	T	45353979	3	4	179	1	0	0	0	0	1	0	0	0	14653	1261	44	3	310	3	SLC2A10	20	45353979	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	222707	45353979	17671541	936	145435											
ZMYND8	23613	broad.mit.edu	37	chr20	45905074	45905074	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgacctgtgctcttatccagGaagtccatggactcctcgct	9	13	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45905074	A	A	45905074	2	1	179	1	0	0	0	0	0	0	0	1	17837	1165	41	4		4	ZMYND8	20	45905074	Silent	SNP	G	TCGA-55-5899-01A-11D-1625-08	551095	45905074	17120446	937	145436											
TSHZ2	128553	broad.mit.edu	37	chr20	51872436	51872436	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accccaaagccagcctcctcCtccagggtcccccccatgaa	6	21	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51872436	T	T	51872436	2	4	179	1	0	0	0	0	0	0	0	1	16749	668	24	4		4	TSHZ2	20	51872436	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	5967362	51872436	11153084	938	145437											
C20orf107	388799	broad.mit.edu	37	chr20	55108465	55108465	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctatgcctttatgttctCttctctgagacagaaaacta	6	10	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55108465	G	G	55108465	1	3	179	0	1	0	0	0	0	0	0	0	2099	913	32	4		4	C20orf107	20	55108465	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3236029	55108465	7917055	939	145438											
BMP7	655	broad.mit.edu	37	chr20	55748407	55748407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaaccatgcagaaggcCtgagccacagcatcccaacc	10	14	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55748407	A	A	55748407	1	1	179	0	1	0	0	0	0	0	0	0	1471	696	24	2		2	BMP7	20	55748407	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	639942	55748407	7277113	940	145439											
APCDD1L	164284	broad.mit.edu	37	chr20	57042210	57042210	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtgggccggtagtgccgCctctccgccgggtcggtgtg	17	15	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57042210	A	A	57042210	3	1	179	1	0	0	0	0	1	0	0	0	768	738	26	3	820	3	APCDD1L	20	57042210	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1293803	57042210	5983310	941	145440											
PHACTR3	116154	broad.mit.edu	37	chr20	58318079	58318079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcactggtgaccccttagGgtgagaggtcatcaccttgg	13	10	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58318079	T	T	58318079	1	4	179	0	1	0	0	0	0	0	0	0	11906	1247	43	2		2	PHACTR3	20	58318079	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1275869	58318079	4707441	942	145441											
COL9A3	1299	broad.mit.edu	37	chr20	61453102	61453102	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccacctctctttacttcCctccagggagaggcaggagt	9	15	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61453102	T	T	61453102	1	4	179	0	1	0	0	0	0	0	0	0	3741	638	22	4		4	COL9A3	20	61453102	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	3135023	61453102	1572418	943	145442											
SLC17A9	63910	broad.mit.edu	37	chr20	61594722	61594722	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccggaagcctgctgtctgGtgagctgggacctgtgccac	14	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61594722	A	A	61594722	5	1	179	1	0	0	0	0	0	0	1	0	14537	1275	44	4	748	4	SLC17A9	20	61594722	Splice_Site	SNP	G	TCGA-55-5899-01A-11D-1625-08	141620	61594722	1430798	944	145443											
PTK6	5753	broad.mit.edu	37	chr20	62164887	62164887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acggggccacacagagccctGatcggggcccactcacctcg	12	17	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62164887	C	C	62164887	1	2	179	0	1	0	0	0	0	0	0	0	12870	1305	45	4		4	PTK6	20	62164887	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	570165	62164887	860633	945	145444											
TPTE	7179	broad.mit.edu	37	chr21	10998064	10998064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcgtattcaaatagtttaGttctttaatttatgtgcaca	6	5	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10998064	T	T	10998064	1	4	179	0	1	0	0	0	0	0	0	0	16554	1044	36	3		3	TPTE	21	10998064	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08		10998064	37131831	946	145445											
CXADR	1525	broad.mit.edu	37	chr21	18919473	18919473	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccgctggacatcgagtggCtgatatcaccagctgataat	11	10	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18919473	T	T	18919473	2	4	179	1	0	0	0	0	0	0	0	1	4109	796	28	4		4	CXADR	21	18919473	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	7921409	18919473	29210422	947	145446											
GRIK1	2897	broad.mit.edu	37	chr21	30910011	30910011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttacctttgctgagacaCcaaaatagagttaaattaag	6	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30910011	T	T	30910011	1	4	179	0	1	0	0	0	0	0	0	0	6839	522	18	4		4	GRIK1	21	30910011	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	11990538	30910011	17219884	948	145447											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744692	31744692	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttattataagaatgcttcCctaggttattgtttaattta	5	4	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31744692	A	A	31744692	1	1	179	0	1	0	0	0	0	0	0	0	8594	638	22	2		2	KRTAP13-2	21	31744692	5'Flank	SNP	C	TCGA-55-5899-01A-11D-1625-08	834681	31744692	16385203	949	145448											
TIAM1	7074	broad.mit.edu	37	chr21	32508145	32508145	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaccgattcaagtaactgCaattaactttatttttaatc	4	7	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32508145	G	G	32508145	1	3	179	0	1	0	0	0	0	0	0	0	16013	725	25	4		4	TIAM1	21	32508145	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	763453	32508145	15621750	950	145449											
AIRE	326	broad.mit.edu	37	chr21	45710008	45710008	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgctcccctcgggtgggTcctgctgcctctgcctttac	10	17	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45710008	A	A	45710008	1	1	179	0	1	0	0	0	0	0	0	0	437	1682	58	5		5	AIRE	21	45710008	Intron	SNP	T	TCGA-55-5899-01A-11D-1625-08	13201863	45710008	2419887	951	145450											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45994266	45994266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgccctcgtgctgccagCagtctagctgccagccggct	12	17	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45994266	A	A	45994266	3	1	179	1	0	0	0	0	1	0	0	0	8582	711	25	3	633	3	KRTAP10-4	21	45994266	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	284258	45994266	2135629	952	145451											
DIP2A	23181	broad.mit.edu	37	chr21	47957423	47957423	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgaaggcgaacccactctCctggatccagaaagtgtgct	11	11	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47957423	A	A	47957423	3	1	179	1	0	0	0	0	1	0	0	0	4567	855	30	3	1830	3	DIP2A	21	47957423	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1963157	47957423	172472	953	145452											
DIP2A	23181	broad.mit.edu	37	chr21	47974083	47974083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagatcgctttcctaggGcaccgtcacaagcactgcaa	8	13	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47974083	T	T	47974083	3	4	179	1	0	0	0	0	1	0	0	0	4567	1217	42	3	3216	3	DIP2A	21	47974083	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	16660	47974083	155812	954	145453											
XKR3	150165	broad.mit.edu	37	chr22	17280954	17280954	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccaagattaacatttattgGtgacagacatctagaaatat	6	6	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17280954	C	C	17280954	1	2	179	0	1	0	0	0	0	0	0	0	17559	1276	44	4		4	XKR3	22	17280954	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08		17280954	34023612	955	145454											
MICAL3	57553	broad.mit.edu	37	chr22	18363985	18363985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcacctgctggccgccatGtgcccgacagggaggtggag	16	12	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18363985	T	T	18363985	1	4	179	0	1	0	0	0	0	0	0	0	9664	1377	48	3		3	MICAL3	22	18363985	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	1083031	18363985	32940581	956	145455											
CABIN1	23523	broad.mit.edu	37	chr22	24515486	24515486	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggatgggaagaagagagggGacctcccaggggagccagtg	20	7	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24515486	A	A	24515486	3	1	179	1	0	0	0	0	1	0	0	0	2554	1174	41	4	4559	4	CABIN1	22	24515486	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	6151501	24515486	26789080	957	145456											
C22orf31	25770	broad.mit.edu	37	chr22	29454768	29454768	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgggccatttcttgagtaCaggctcctcgtggacacctg	11	12	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29454768	G	G	29454768	3	3	179	1	0	0	0	0	1	0	0	0	2165	478	17	4	41	4	C22orf31	22	29454768	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	4939282	29454768	21849798	958	145457											
RNF185	91445	broad.mit.edu	37	chr22	31582944	31582944	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggattcagtcataatcagctCtggagcctagagaagacagg	12	8	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31582944	G	G	31582944	1	3	179	0	1	0	0	0	0	0	0	0	13579	928	32	4		4	RNF185	22	31582944	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2128176	31582944	19721622	959	145458											
CACNA1I	8911	broad.mit.edu	37	chr22	40066630	40066630	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacccttctccacagtttctCtcatggtgctttggctgggt	9	13	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40066630	G	G	40066630	1	3	179	0	1	0	0	0	0	0	0	0	2572	928	32	4		4	CACNA1I	22	40066630	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	8483686	40066630	11237936	960	145459											
ADSL	158	broad.mit.edu	37	chr22	40762371	40762371	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcagtggtatcccctgacAttggaaaaggtattatctgc	9	8	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40762371	T	T	40762371	1	4	179	0	1	0	0	0	0	0	0	0	346	232	8	5		5	ADSL	22	40762371	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	695741	40762371	10542195	961	145460											
XRCC6	2547	broad.mit.edu	37	chr22	42024312	42024312	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcggctcatgcctgtaatctCaggacattgggaggccgaga	14	10	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42024312	G	G	42024312	1	3	179	0	1	0	0	0	0	0	0	0	17584	841	29	4		4	XRCC6	22	42024312	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	1261941	42024312	9280254	962	145461											
EFCAB6	64800	broad.mit.edu	37	chr22	44178304	44178304	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctgaagggacagctgcaGagtgtaaaaatgatgctagt	12	5	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44178304	A	A	44178304	1	1	179	0	1	0	0	0	0	0	0	0	4979	957	33	4		4	EFCAB6	22	44178304	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	2153992	44178304	7126262	963	145462											
PARVG	64098	broad.mit.edu	37	chr22	44587910	44587910	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctggattatttaatttcttCcccctttatttttcttagag	4	8	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44587910	T	T	44587910	1	4	179	0	1	0	0	0	0	0	0	0	11564	870	30	4		4	PARVG	22	44587910	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	409606	44587910	6716656	964	145463											
BRD1	23774	broad.mit.edu	37	chr22	50211243	50211243	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcacctccatccaaccacatCgctctgcacaccaggcacca	4	20	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50211243	T	T	50211243	1	4	179	0	1	0	0	0	0	0	0	0	1510	899	31	4		4	BRD1	22	50211243	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	5623333	50211243	1093323	965	145464											
TTLL8	164714	broad.mit.edu	37	chr22	50487647	50487647	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaagctttggagaggccgCagctgaccatgacgcatgca	14	10	0	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50487647	G	G	50487647	1	3	179	0	1	0	0	0	0	0	0	0	16859	725	25	4		4	TTLL8	22	50487647	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	276404	50487647	816919	966	145465											
SBF1	6305	broad.mit.edu	37	chr22	50897848	50897848	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggacacggagctgagggaGgggagggtgagatagggcag	23	4	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50897848	A	A	50897848	1	1	179	0	1	0	0	0	0	0	0	0	13970	1015	35	4		4	SBF1	22	50897848	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	410201	50897848	406718	967	145466											
FRMPD4	9758	broad.mit.edu	37	chrX	12712628	12712628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgatataaactaactctGgggctttgccctgaattctt	8	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12712628	T	T	12712628	1	4	179	0	1	0	0	0	0	0	0	0	6119	1363	47	2		2	FRMPD4	23	12712628	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08		12712628	142557932	968	145467											
ACE2	59272	broad.mit.edu	37	chrX	15612929	15612929	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaatatttcccaaatatttCaactcttgggatcaatgcta	4	8	3	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15612929	G	G	15612929	1	3	179	0	1	0	0	0	0	0	0	0	137	841	29	4		4	ACE2	23	15612929	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2900301	15612929	139657631	969	145468											
CXorf22	170063	broad.mit.edu	37	chrX	35988934	35988934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgtgaatcatgattttGcatatactacatttgaaaaa	5	5	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35988934	T	T	35988934	3	4	179	1	0	0	0	0	1	0	0	0	4135	1319	46	3	1906	3	CXorf22	23	35988934	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	20376005	35988934	119281626	970	145469											
SYTL5	94122	broad.mit.edu	37	chrX	37961594	37961594	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttccctttcttttttaGgactccttggaagagactga	7	8	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37961594	T	T	37961594	5	4	179	1	0	0	0	0	0	0	1	0	15605	1014	35	2	1096	2	SYTL5	23	37961594	Splice_Site	SNP	G	TCGA-55-5899-01A-11D-1625-08	1972660	37961594	117308966	971	145470											
EFHC2	80258	broad.mit.edu	37	chrX	44168459	44168459	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagatgctgttaatgaacAttatggacaattcatggtgt	9	4	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44168459	G	G	44168459	1	3	179	0	1	0	0	0	0	0	0	0	4987	232	8	5		5	EFHC2	23	44168459	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	6206865	44168459	111102101	972	145471											
KDM6A	7403	broad.mit.edu	37	chrX	44928907	44928907	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actgggccttcccagcatctCcaggcagctggctctggtat	11	14	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44928907	T	T	44928907	2	4	179	1	0	0	0	0	0	0	0	1	8207	842	30	4		4	KDM6A	23	44928907	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	760448	44928907	110341653	973	145472											
CCNB3	85417	broad.mit.edu	37	chrX	50053312	50053312	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaacttgttggctttgcagGagaaaagcaccatggaagaa	12	6	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50053312	A	A	50053312	3	1	179	1	0	0	0	0	1	0	0	0	2944	1175	41	4	2157	4	CCNB3	23	50053312	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	5124405	50053312	105217248	974	145473											
HUWE1	10075	broad.mit.edu	37	chrX	53563173	53563173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagcagataaaccagacCttggtagaagtggtaatctt	9	8	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53563173	A	A	53563173	3	1	179	1	0	0	0	0	1	0	0	0	7531	681	24	2	678	2	HUWE1	23	53563173	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3509861	53563173	101707387	975	145474											
TRO	7216	broad.mit.edu	37	chrX	54956525	54956525	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgacttcggtggtactcCcagcaacagcattggctttg	11	11	0	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54956525	G	G	54956525	3	3	179	1	0	0	0	0	1	0	0	0	16699	623	22	4	3410	4	TRO	23	54956525	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	1393352	54956525	100314035	976	145475											
ZC3H12B	340554	broad.mit.edu	37	chrX	64718908	64718908	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctacgaaaactggagaagGaaaagattcttgtcttcaca	8	7	4	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64718908	A	A	64718908	3	1	179	1	0	0	0	0	1	0	0	0	17688	1175	41	4	788	4	ZC3H12B	23	64718908	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	9762383	64718908	90551652	977	145476											
VSIG4	11326	broad.mit.edu	37	chrX	65253193	65253193	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtccacttcctctgataagCacatatacctgtggagagcc	8	12	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65253193	G	G	65253193	1	3	179	0	1	0	0	0	0	0	0	0	17352	725	25	4		4	VSIG4	23	65253193	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	534285	65253193	90017367	978	145477											
CDX4	1046	broad.mit.edu	37	chrX	72673394	72673394	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtatcgtgtagtttacactGatcatcaaagattggagctg	10	6	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72673394	C	C	72673394	3	2	179	1	0	0	0	0	1	0	0	0	3214	1290	45	4	550	4	CDX4	23	72673394	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	7420201	72673394	82597166	979	145478											
BRWD3	254065	broad.mit.edu	37	chrX	79939720	79939720	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tattaaggaatacaatgggaCtaaaattggtatcacctact	7	6	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79939720	T	T	79939720	1	4	179	0	1	0	0	0	0	0	0	0	1535	580	20	4		4	BRWD3	23	79939720	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	7266326	79939720	75330840	980	145479											
RPS6KA6	27330	broad.mit.edu	37	chrX	83390111	83390111	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaagaatacagctttaCttttctggcttcaggtctct	6	9	3	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83390111	A	A	83390111	5	1	179	1	0	0	0	0	0	0	1	0	13766	579	20	3	1692	3	RPS6KA6	23	83390111	Splice_Site	SNP	C	TCGA-55-5899-01A-11D-1625-08	3450391	83390111	71880449	981	145480											
DACH2	117154	broad.mit.edu	37	chrX	85415295	85415295	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgccagctccagcagccttCtgatccactgccttgatgac	8	15	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85415295	G	G	85415295	1	3	179	0	1	0	0	0	0	0	0	0	4254	928	32	4		4	DACH2	23	85415295	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	2025184	85415295	69855265	982	145481											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177843	89177843	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaaaacccaagtagtcagtCccttatgtactgtggtaaac	7	10	1	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177843	A	A	89177843	1	1	179	0	1	0	0	0	0	0	0	0	15950	870	30	3		3	TGIF2LX	23	89177843	3'UTR	SNP	C	TCGA-55-5899-01A-11D-1625-08	3762548	89177843	66092717	983	145482											
PABPC5	140886	broad.mit.edu	37	chrX	90691644	90691644	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgaagaggctaccaaAgcagtggatgagatgaatgg	13	5	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90691644	T	T	90691644	3	4	179	1	0	0	0	0	1	0	0	0	11461	69	3	5	1070	5	PABPC5	23	90691644	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	1513801	90691644	64578916	984	145483											
PCDH11X	27328	broad.mit.edu	37	chrX	91368899	91368899	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccttgaatccacggcttaAcatttcgtcagcttcatcca	6	13	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91368899	G	G	91368899	1	3	179	0	1	0	0	0	0	0	0	0	11602	58	2	5		5	PCDH11X	23	91368899	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	677255	91368899	63901661	985	145484											
BEX5	340542	broad.mit.edu	37	chrX	101409280	101409280	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttcttcctagaAgataaaaagcaagaagaggg	8	4	1	4			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101409280	G	G	101409280	1	3	179	0	1	0	0	0	0	0	0	0	1419	87	3	5		5	BEX5	23	101409280	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	10040381	101409280	53861280	986	145485											
NXF2B	728343	broad.mit.edu	37	chrX	101623603	101623603	+	Intron	SNP	G	T	T													gtgatggtggtggtggtggtGgtggtggtggtggtggtggt							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101623603	T	T	101623603	1	4	179	0	1	0	0	0	0	0	0	0	10879	1363	47	2		2	NXF2B	23	101623603	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	214323	101623603	53646957	987	145486	624	2									
NXF2B	728343	broad.mit.edu	37	chrX	101623606	101623606	+	Intron	SNP	G	T	T													atggtggtggtggtggtggtGgtggtggtggtggtggtggt							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101623606	T	T	101623606	1	4	179	0	1	0	0	0	0	0	0	0	10879	1363	47	2		2	NXF2B	23	101623606	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	3	101623606	53646954	988	145487	624	2									
NXF3	56000	broad.mit.edu	37	chrX	102343880	102343880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcaggagttaaggcagaCtcacaggattttattcctgg	11	7	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102343880	A	A	102343880	1	1	179	0	1	0	0	0	0	0	0	0	10880	580	20	3		3	NXF3	23	102343880	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	720274	102343880	52926680	989	145488											
GLRA4	441509	broad.mit.edu	37	chrX	102974190	102974190	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactttacctcgatgcagGtgaatttccctgcaaggaga	10	9	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102974190	T	T	102974190	3	4	179	1	0	0	0	0	1	0	0	0	6521	1261	44	3	632	3	GLRA4	23	102974190	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	630310	102974190	52296370	990	145489											
H2BFWT	158983	broad.mit.edu	37	chrX	103267410	103267410	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcaccatatagatagcctaGaaacataactaacaaaaatg	4	8	1	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103267410	A	A	103267410	1	1	179	0	1	0	0	0	0	0	0	0	6998	957	33	4		4	H2BFWT	23	103267410	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	293220	103267410	52003150	991	145490											
COL4A5	1287	broad.mit.edu	37	chrX	107823933	107823933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccccaggtggtgagaaaGgtgagaagggtgagcaagga	18	6	0	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107823933	T	T	107823933	3	4	179	1	0	0	0	0	1	0	0	0	3726	1000	35	2	914	2	COL4A5	23	107823933	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	4556523	107823933	47446627	992	145491											
COL4A5	1287	broad.mit.edu	37	chrX	107865899	107865899	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgttttcacacacattgAttttaggtgatgatggcttg	10	5	1	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107865899	T	T	107865899	1	4	179	0	1	0	0	0	0	0	0	0	3726	348	12	5		5	COL4A5	23	107865899	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	41966	107865899	47404661	993	145492											
CAPN6	827	broad.mit.edu	37	chrX	110490676	110490676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgaactgtattcttctGgacaggagaacggacttcct	11	9	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110490676	T	T	110490676	3	4	179	1	0	0	0	0	1	0	0	0	2656	1357	47	2	270	2	CAPN6	23	110490676	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	2624777	110490676	44779884	994	145493											
CT47B1	643311	broad.mit.edu	37	chrX	120009188	120009188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgccgccgggtaccgacGggtggccaccgccaagtcga	15	17	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120009188	T	T	120009188	3	4	179	1	0	0	0	0	1	0	0	0	4023	1116	39	1	570	1	CT47B1	23	120009188	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	9518512	120009188	35261372	995	145494											
ODZ1	10178	broad.mit.edu	37	chrX	123526090	123526090	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaccacagaatgggtcgccCagtctggtcataaagaattc	10	10	2	3			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123526090	T	T	123526090	3	4	179	1	0	0	0	0	1	0	0	0	10929	594	21	4	2718	4	ODZ1	23	123526090	Missense_Mutation	SNP	C	TCGA-55-5899-01A-11D-1625-08	3516902	123526090	31744470	996	145495											
ARHGAP36	158763	broad.mit.edu	37	chrX	130218276	130218276	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaaaatttcctttccaAttggccaacgacttctggga	6	10	2	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130218276	G	G	130218276	3	3	179	1	0	0	0	0	1	0	0	0	885	101	4	5	657	5	ARHGAP36	23	130218276	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	6692186	130218276	25052284	997	145496											
CT45A5	441521	broad.mit.edu	37	chrX	134947845	134947845	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaggtaacatggatatcttCtgaatcatagaaagagtgac	10	5	3	5			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134947845	A	A	134947845	1	1	179	0	1	0	0	0	0	0	0	0	4022	928	32	3		3	CT45A5	23	134947845	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	4729569	134947845	20322715	998	145497											
SLC9A6	10479	broad.mit.edu	37	chrX	135112153	135112153	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccaaaaatctgcatcaaCagctatagagaagcaagaaa	8	8	2	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135112153	G	G	135112153	1	3	179	0	1	0	0	0	0	0	0	0	14832	493	17	4		4	SLC9A6	23	135112153	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	164308	135112153	20158407	999	145498											
MAP7D3	79649	broad.mit.edu	37	chrX	135309404	135309404	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccatctgaactttataatCtggttctcatcccctgataa	4	11	3	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135309404	G	G	135309404	1	3	179	0	1	0	0	0	0	0	0	0	9361	928	32	4		4	MAP7D3	23	135309404	Intron	SNP	C	TCGA-55-5899-01A-11D-1625-08	197251	135309404	19961156	1000	145499											
GPR112	139378	broad.mit.edu	37	chrX	135438316	135438316	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaagagatggtcatggatCgagctattgtaagtaatttt	12	3	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135438316	A	A	135438316	2	1	179	1	0	0	0	0	0	0	0	1	6694	876	31	3		3	GPR112	23	135438316	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	128912	135438316	19832244	1001	145500											
BRS3	680	broad.mit.edu	37	chrX	135570277	135570277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtcttcagaagaaatgGctcaaaggcagcctcactca	8	12	5	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135570277	T	T	135570277	3	4	179	1	0	0	0	0	1	0	0	0	1531	1203	42	3	6	3	BRS3	23	135570277	Missense_Mutation	SNP	G	TCGA-55-5899-01A-11D-1625-08	131961	135570277	19700283	1002	145501											
ARHGEF6	9459	broad.mit.edu	37	chrX	135761524	135761524	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatatttgcagatggacaAtgggaaatggaaaattaaga	10	3	0	2			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135761524	G	G	135761524	1	3	179	0	1	0	0	0	0	0	0	0	912	116	4	5		5	ARHGEF6	23	135761524	Intron	SNP	A	TCGA-55-5899-01A-11D-1625-08	191247	135761524	19509036	1003	145502											
SOX3	6658	broad.mit.edu	37	chrX	139586803	139586803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgaaggcgttcatgggCcgtttcacacggtcctggtc	12	12	2	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139586803	A	A	139586803	2	1	179	1	0	0	0	0	0	0	0	1	15065	726	26	3		3	SOX3	23	139586803	Silent	SNP	C	TCGA-55-5899-01A-11D-1625-08	3825279	139586803	15683757	1004	145503											
MAGEC3	139081	broad.mit.edu	37	chrX	140969218	140969218	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcgagcccttgttcacttAtacactggatgaaaaggtgg	12	8	1	1			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140969218	G	G	140969218	3	3	179	1	0	0	0	0	1	0	0	0	9274	449	16	5	559	5	MAGEC3	23	140969218	Missense_Mutation	SNP	A	TCGA-55-5899-01A-11D-1625-08	1382415	140969218	14301342	1005	145504											
SPANXN3	139067	broad.mit.edu	37	chrX	142605183	142605183	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattcacaggggctcttcgTcttctccccattggtgctgg	12	12	4	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142605183	C	C	142605183	3	2	179	1	0	0	0	0	1	0	0	0	15108	1667	58	5	396	5	SPANXN3	23	142605183	Missense_Mutation	SNP	T	TCGA-55-5899-01A-11D-1625-08	1635965	142605183	12665377	1006	145505											
GABRQ	55879	broad.mit.edu	37	chrX	151818123	151818123	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgtgtgcaagttagtgGgtaggagcttgtagcatgtc	15	4	0	0			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151818123	T	T	151818123	1	4	179	0	1	0	0	0	0	0	0	0	6235	1247	43	2		2	GABRQ	23	151818123	Intron	SNP	G	TCGA-55-5899-01A-11D-1625-08	9212940	151818123	3452437	1007	145506											
HCFC1	3054	broad.mit.edu	37	chrX	153225216	153225216	+	Intron	DEL	C	-	-													tgcctctccccggaggctagCcccctactttcaaacgtccc							TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153225216	-	-	153225216	6	5	179	0	1	1	0	1	0	0	0	0	7057	754	26	0		0	HCFC1	23	153225216	Intron	DEL	C	TCGA-55-5899-01A-11D-1625-08	1407093	153225216	2045344	1008	145507											
AADACL4	343066	broad.mit.edu	37	chr1	12726494	12726494	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctggatgtagaaaattcAcccctgatagcagatgatga	10	7	1	5			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12726494	G	G	12726494	2	3	180	1	0	0	0	0	0	0	0	1	13	146	6	5		5	AADACL4	1	12726494	Silent	SNP	A	TCGA-55-6543-01A-11D-1753-08		12726494	236524127	1	145508											
MYOM3	127294	broad.mit.edu	37	chr1	24397690	24397690	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctacttccagccaaagccGcacctcccctcgctccagga	6	19	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24397690	A	A	24397690	3	1	180	1	0	0	0	0	1	0	0	0	10187	1086	38	4	1298	4	MYOM3	1	24397690	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	11671196	24397690	224852931	2	145509											
SEPN1	57190	broad.mit.edu	37	chr1	26134941	26134941	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcataagggcaggaacCtccctggggtccatctgctc	11	14	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26134941	T	T	26134941	1	4	180	0	1	0	0	0	0	0	0	0	14169	696	24	4		4	SEPN1	1	26134941	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08	1737251	26134941	223115680	3	145510											
CACHD1	57685	broad.mit.edu	37	chr1	65120471	65120471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaagcctacaatgttagCtatgcctggaagatggtgag	13	6	0	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65120471	A	A	65120471	3	1	180	1	0	0	0	0	1	0	0	0	2563	796	28	3	1660	3	CACHD1	1	65120471	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08	38985530	65120471	184130150	4	145511											
GSTM3	2947	broad.mit.edu	37	chr1	110280922	110280922	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcacacatgttgtgcttgcGagcgatgtagcgcaagatgg	13	9	1	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110280922	A	A	110280922	3	1	180	1	0	0	0	0	1	0	0	0	6905	1058	37	4	441	4	GSTM3	1	110280922	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	45160451	110280922	138969699	5	145512											
FCRL4	83417	broad.mit.edu	37	chr1	157548366	157548366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattttcaaggctgttcctGttagtattaaagtgctacag	8	7	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157548366	T	T	157548366	1	4	180	0	1	0	0	0	0	0	0	0	5854	1392	48	3		3	FCRL4	1	157548366	Intron	SNP	G	TCGA-55-6543-01A-11D-1753-08	47267444	157548366	91702255	6	145513											
PAPOLG	64895	broad.mit.edu	37	chr2	60998828	60998828	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attagagaaatatagatattTttgctgaattgactattcag	7	3	1	4			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60998828	G	G	60998828	1	3	180	0	1	0	0	0	0	0	0	0	11525	1856	64	5		5	PAPOLG	2	60998828	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08		60998828	182200545	7	145514											
COX5B	1329	broad.mit.edu	37	chr2	98263950	98263950	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatccacttgcttaatatatCctacaatagtgtgtaagctg	6	8	0	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98263950	A	A	98263950	1	1	180	0	1	0	0	0	0	0	0	0	3805	870	30	3		3	COX5B	2	98263950	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08	37265122	98263950	144935423	8	145515											
GRB14	2888	broad.mit.edu	37	chr2	165351172	165351172	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtattcaatgggtgggattaTccaacttggcaatcaatatg	10	6	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165351172	A	A	165351172	1	1	180	0	1	0	0	0	0	0	0	0	6823	1450	50	5		5	GRB14	2	165351172	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	67087222	165351172	77848201	9	145516											
DNER	92737	broad.mit.edu	37	chr2	230312248	230312248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttcttcacaagcagatcCgaagtatcctgtgaaaaaac	6	10	2	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230312248	T	T	230312248	3	4	180	1	0	0	0	0	1	0	0	0	4707	661	23	4	967	4	DNER	2	230312248	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08	64961076	230312248	12887125	10	145517											
BRPF1	7862	broad.mit.edu	37	chr3	9775768	9775768	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtctctggtgcaaatggCcaggaactcatccccagcct	12	13	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9775768	T	T	9775768	1	4	180	0	1	0	0	0	0	0	0	0	1529	754	26	4		4	BRPF1	3	9775768	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08		9775768	188246662	11	145518											
LRRC2	79442	broad.mit.edu	37	chr3	46593057	46593057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctctgatgacagaaatgtCgaagacaaccactttatgtc	9	9	1	4			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46593057	A	A	46593057	3	1	180	1	0	0	0	0	1	0	0	0	9063	884	31	3	1122	3	LRRC2	3	46593057	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08	36817289	46593057	151429373	12	145519											
CDH12	1010	broad.mit.edu	37	chr5	21882649	21882649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtccctcactcgccgcCgacaacctgtctcgccgcgc	8	21	3	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21882649	A	A	21882649	1	1	180	0	1	0	0	0	0	0	0	0	3128	667	23	1		1	CDH12	5	21882649	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08		21882649	159032611	13	145520											
RNASEN	29102	broad.mit.edu	37	chr5	31526237	31526237	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgttctccctcggtcataaTcagatctgtaccggctgtct	9	12	5	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31526237	A	A	31526237	3	1	180	1	0	0	0	0	1	0	0	0	13528	1435	50	5	3449	5	RNASEN	5	31526237	Missense_Mutation	SNP	T	TCGA-55-6543-01A-11D-1753-08	9643588	31526237	149389023	14	145521											
ADAMTS12	81792	broad.mit.edu	37	chr5	33630758	33630758	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcttatcttttcgtttcaTgaactatatataaaaaacag	4	6	3	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33630758	G	G	33630758	1	3	180	0	1	0	0	0	0	0	0	0	257	1479	51	5		5	ADAMTS12	5	33630758	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	2104521	33630758	147284502	15	145522											
SLC4A9	83697	broad.mit.edu	37	chr5	139742131	139742132	+	Intron	DEL	GT	-	-													tgacccggtgagctgagcagGtgtgtgtgtgtgcgcgcgca							TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139742132	-	-	139742131	6	5	180	0	1	1	0	1	0	0	0	0	14774	1276	44	0		0	SLC4A9	5	139742131	Intron	DEL	GT	TCGA-55-6543-01A-11D-1753-08	106111373	139742131	41173129	16	145523											
PLAC8L1	153770	broad.mit.edu	37	chr5	145477637	145477637	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttaatttctgtccttgTgcctgctgtaggttttccac	7	10	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145477637	C	C	145477637	1	2	180	0	1	0	0	0	0	0	0	0	12111	1711	59	5		5	PLAC8L1	5	145477637	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	5735506	145477637	35437623	17	145524											
PLAC8L1	153770	broad.mit.edu	37	chr5	145477898	145477898	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacttggaaacaaaggtgtTtcagaacaataaccattaag	7	6	1	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145477898	G	G	145477898	1	3	180	0	1	0	0	0	0	0	0	0	12111	1856	64	5		5	PLAC8L1	5	145477898	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	261	145477898	35437362	18	145525											
PPP2R2B	5521	broad.mit.edu	37	chr5	146030242	146030242	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgttggcaaatactcttcGtggggtggcctccaccatca	11	12	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146030242	A	A	146030242	4	1	180	1	0	0	0	0	0	1	0	0	12486	1153	40	4	858	4	PPP2R2B	5	146030242	Nonsense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	552344	146030242	34885018	19	145526											
ODZ2	57451	broad.mit.edu	37	chr5	167553836	167553836	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagagggctggacaggcGcagcgtgtgaccagcgcgtg	19	9	0	3			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167553836	A	A	167553836	3	1	180	1	0	0	0	0	1	0	0	0	10930	1087	38	4	2333	4	ODZ2	5	167553836	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	21523594	167553836	13361424	20	145527											
NEDD9	4739	broad.mit.edu	37	chr6	11233444	11233444	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgtgtgtgtgactgttTgctttttttgttcttttcaa	9	4	2	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11233444	C	C	11233444	1	2	180	0	1	0	0	0	0	0	0	0	10408	1827	63	5		5	NEDD9	6	11233444	5'Flank	SNP	T	TCGA-55-6543-01A-11D-1753-08		11233444	159881623	21	145528											
ADAM22	53616	broad.mit.edu	37	chr7	87785187	87785187	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaaagaagtaattggtAatcttttgatacagggatgt	12	2	1	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87785187	G	G	87785187	1	3	180	0	1	0	0	0	0	0	0	0	244	377	13	5		5	ADAM22	7	87785187	Intron	SNP	A	TCGA-55-6543-01A-11D-1753-08		87785187	71353476	22	145529											
STAG3	10734	broad.mit.edu	37	chr7	99796940	99796940	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggactgtgcaggggctcGgctgaaggactgggagggtc	21	7	0	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99796940	A	A	99796940	3	1	180	1	0	0	0	0	1	0	0	0	15362	1116	39	4	1577	4	STAG3	7	99796940	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	12011753	99796940	59341723	23	145530											
SRRT	51593	broad.mit.edu	37	chr7	100478963	100478963	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatatcgggactatgaccgGaatcggcgagagcgcttctc	13	10	1	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100478963	A	A	100478963	2	1	180	1	0	0	0	0	0	0	0	1	15290	1161	41	4		4	SRRT	7	100478963	Silent	SNP	G	TCGA-55-6543-01A-11D-1753-08	682023	100478963	58659700	24	145531											
HAS2	3037	broad.mit.edu	37	chr8	122641167	122641167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctgatttgtctctgccCatgacttcactgaagatgtc	10	10	2	4			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122641167	A	A	122641167	3	1	180	1	0	0	0	0	1	0	0	0	7028	594	21	2	1256	2	HAS2	8	122641167	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08		122641167	23722855	25	145532											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18639427	18639427	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgagccctatttagatAcctccttttcaagccacatc	6	12	1	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18639427	C	C	18639427	1	2	180	0	1	0	0	0	0	0	0	0	274	406	14	5		5	ADAMTSL1	9	18639427	Intron	SNP	A	TCGA-55-6543-01A-11D-1753-08		18639427	122574004	26	145533											
FRMPD1	22844	broad.mit.edu	37	chr9	37692531	37692531	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacactagttattcgattaGcatgtcttataatgggcaaa	8	6	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37692531	A	A	37692531	1	1	180	0	1	0	0	0	0	0	0	0	6117	986	34	4		4	FRMPD1	9	37692531	Intron	SNP	G	TCGA-55-6543-01A-11D-1753-08	19053104	37692531	103520900	27	145534											
NUP214	8021	broad.mit.edu	37	chr9	134070639	134070639	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggactggctttaattttgggAtaatcacaccaacaccgtct	8	10	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134070639	T	T	134070639	3	4	180	1	0	0	0	0	1	0	0	0	10857	333	12	5	3789	5	NUP214	9	134070639	Missense_Mutation	SNP	A	TCGA-55-6543-01A-11D-1753-08	96378108	134070639	7142792	28	145535											
NUDT5	11164	broad.mit.edu	37	chr10	12219775	12219775	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatccctaagaagcaattcGatgttgagtgactcacctgc	8	11	1	3			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12219775	T	T	12219775	1	4	180	0	1	0	0	0	0	0	0	0	10837	1073	37	3		3	NUDT5	10	12219775	Intron	SNP	G	TCGA-55-6543-01A-11D-1753-08		12219775	123314972	29	145536											
SEC31B	25956	broad.mit.edu	37	chr10	102256138	102256138	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctcaccccatgaggaccCcgcagttgctccaagctcct	10	17	1	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102256138	G	G	102256138	2	3	180	1	0	0	0	0	0	0	0	1	14112	610	22	4		4	SEC31B	10	102256138	Silent	SNP	C	TCGA-55-6543-01A-11D-1753-08	90036363	102256138	33278609	30	145537											
CASP7	840	broad.mit.edu	37	chr10	115457383	115457383	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtttgcttaatcagggAccctggaccacgtcagcctg	11	11	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115457383	C	C	115457383	1	2	180	0	1	0	0	0	0	0	0	0	2702	290	10	5		5	CASP7	10	115457383	Intron	SNP	A	TCGA-55-6543-01A-11D-1753-08	13201245	115457383	20077364	31	145538											
WDR11	55717	broad.mit.edu	37	chr10	122667993	122667993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagcagacgcgactcaccCttcctgcttctgggagcctg	11	15	2	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122667993	A	A	122667993	1	1	180	0	1	0	0	0	0	0	0	0	17400	696	24	2		2	WDR11	10	122667993	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08	7210610	122667993	12866754	32	145539											
B4GALNT4	338707	broad.mit.edu	37	chr11	379841	379842	+	Intron	INS	-	CC	CC													gagtcagcgtcggctcagcgINSccccccccgccttttctcct					rs144602584	by1000genomes	TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	379842	CC	CC	379841	6	5	180	0	1	1	1	0	0	0	0	0	1274	1102	38	0		0	B4GALNT4	11	379841	Intron	INS	-	TCGA-55-6543-01A-11D-1753-08		379841	134626675	33	145540											
ANO9	338440	broad.mit.edu	37	chr11	433471	433471	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggatcacctgggggcacaTgggatcctctatcccacctc	10	16	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	433471	A	A	433471	1	1	180	0	1	0	0	0	0	0	0	0	704	1479	51	5		5	ANO9	11	433471	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	53630	433471	134573045	34	145541											
OSBPL5	114879	broad.mit.edu	37	chr11	3143534	3143534	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggctcaggtggccgtcgGtctgacagtgacactgctgc	14	13	2	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3143534	A	A	3143534	1	1	180	0	1	0	0	0	0	0	0	0	11374	1276	44	4		4	OSBPL5	11	3143534	Intron	SNP	G	TCGA-55-6543-01A-11D-1753-08	2710063	3143534	131862982	35	145542											
BCL9L	283149	broad.mit.edu	37	chr11	118771997	118771997	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgttctgggcccgaacccGggccatctcctcaggactga	12	15	3	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118771997	A	A	118771997	3	1	180	1	0	0	0	0	1	0	0	0	1387	1115	39	4	2056	4	BCL9L	11	118771997	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	115628463	118771997	16234519	36	145543											
KCNA5	3741	broad.mit.edu	37	chr12	5154676	5154676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccagtgccgtctacttcGcagaggctgacaaccaggga	11	13	2	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5154676	T	T	5154676	3	4	180	1	0	0	0	0	1	0	0	0	8076	1087	38	3	1365	3	KCNA5	12	5154676	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08		5154676	128697219	37	145544											
FLT1	2321	broad.mit.edu	37	chr13	28903740	28903740	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacggagccggccctcccCttctccattacctccttgct	8	18	1	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28903740	T	T	28903740	1	4	180	0	1	0	0	0	0	0	0	0	5999	696	24	4		4	FLT1	13	28903740	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08		28903740	86266138	38	145545											
FNDC3A	22862	broad.mit.edu	37	chr13	49761195	49761195	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtattctgtttattaggTtttttttatcatttttatgt	6	2	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49761195	C	C	49761195	1	2	180	0	1	0	0	0	0	0	0	0	6027	1740	60	5		5	FNDC3A	13	49761195	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	20857455	49761195	65408683	39	145546											
MYCBP2	23077	broad.mit.edu	37	chr13	77625934	77625934	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgttgtttctaataaaaTgttctgcctacctgagccct	6	10	2	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77625934	A	A	77625934	1	1	180	0	1	0	0	0	0	0	0	0	10112	1479	51	5		5	MYCBP2	13	77625934	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	27864739	77625934	37543944	40	145547											
TUBGCP3	10426	broad.mit.edu	37	chr13	113158399	113158399	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggtgtctaagaacacctCgtgtgcagcaatgatgtgat	12	7	1	3			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113158399	A	A	113158399	4	1	180	1	0	0	0	0	0	1	0	0	16893	893	31	3	485	3	TUBGCP3	13	113158399	Nonsense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08	35532465	113158399	2011479	41	145548											
OR4K2	390431	broad.mit.edu	37	chr14	20344588	20344588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagttatagtggaccctcaCctacactctcctatgtattt	5	12	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20344588	A	A	20344588	3	1	180	1	0	0	0	0	1	0	0	0	11166	506	18	3	164	3	OR4K2	14	20344588	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08		20344588	87004952	42	145549											
TMEM55B	90809	broad.mit.edu	37	chr14	20926895	20926895	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagggagaagaaaagaaagAtggggttaatgttggtctcc	16	3	1	4			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20926895	T	T	20926895	1	4	180	0	1	0	0	0	0	0	0	0	16305	348	12	5		5	TMEM55B	14	20926895	Intron	SNP	A	TCGA-55-6543-01A-11D-1753-08	582307	20926895	86422645	43	145550											
PSME1	5720	broad.mit.edu	37	chr14	24607425	24607425	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagaaggtgtttgagctgatGaccagcctccacaccaagct	11	11	0	4			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24607425	C	C	24607425	3	2	180	1	0	0	0	0	1	0	0	0	12812	1290	45	4	510	4	PSME1	14	24607425	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	3680530	24607425	82742115	44	145551											
PYGL	5836	broad.mit.edu	37	chr14	51372344	51372344	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttataataaacatcagccAagcacatccaaacacatttc	2	12	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51372344	G	G	51372344	1	3	180	0	1	0	0	0	0	0	0	0	12969	145	5	5		5	PYGL	14	51372344	Intron	SNP	A	TCGA-55-6543-01A-11D-1753-08	26764919	51372344	55977196	45	145552											
C14orf1	11161	broad.mit.edu	37	chr14	76121073	76121073	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtctactatgttttctAggcttggagggaatgtaacc	11	6	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76121073	T	T	76121073	1	4	180	0	1	0	0	0	0	0	0	0	1746	435	15	5		5	C14orf1	14	76121073	Intron	SNP	A	TCGA-55-6543-01A-11D-1753-08	24748729	76121073	31228467	46	145553											
RYR3	6263	broad.mit.edu	37	chr15	34150088	34150088	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaagacgatgacgagccCgatatgaagtgcgacgacat	13	9	0	3			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34150088	A	A	34150088	2	1	180	1	0	0	0	0	0	0	0	1	13881	639	23	1		1	RYR3	15	34150088	Silent	SNP	C	TCGA-55-6543-01A-11D-1753-08		34150088	68381304	47	145554											
BAHD1	22893	broad.mit.edu	37	chr15	40756669	40756669	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accactgtgttgtccttccaGgagagctgatgatgagcctc	11	11	0	4			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40756669	T	T	40756669	5	4	180	1	0	0	0	0	0	0	1	0	1302	1014	35	2	1989	2	BAHD1	15	40756669	Splice_Site	SNP	G	TCGA-55-6543-01A-11D-1753-08	6606581	40756669	61774723	48	145555											
MYH2	4620	broad.mit.edu	37	chr17	10436696	10436696	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccagcttgtcatctcGcatctcctctaggagcccca	9	16	4	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10436696	A	A	10436696	4	1	180	1	0	0	0	0	0	1	0	0	10129	1095	38	4	3558	4	MYH2	17	10436696	Nonsense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08		10436696	70758514	49	145556											
TRPV2	51393	broad.mit.edu	37	chr17	16321056	16321056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaagatggctctgaggCggacagaggaaagctggatt	15	7	1	4			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16321056	A	A	16321056	3	1	180	1	0	0	0	0	1	0	0	0	16721	768	27	3	76	3	TRPV2	17	16321056	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08	5884360	16321056	64874154	50	145557											
ASPSCR1	79058	broad.mit.edu	37	chr17	79952826	79952826	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaactggaaaatctgctgTcccgcagccgtctccagggc	10	15	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79952826	C	C	79952826	1	2	180	0	1	0	0	0	0	0	0	0	1063	1682	58	5		5	ASPSCR1	17	79952826	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08	63631770	79952826	1242384	51	145558											
SMARCA4	6597	broad.mit.edu	37	chr19	11152224	11152224	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgtggatgccgtgatcaAgtacaaggacaggtaagcga	14	6	1	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11152224	G	G	11152224	3	3	180	1	0	0	0	0	1	0	0	0	14884	72	3	5	4635	5	SMARCA4	19	11152224	Missense_Mutation	SNP	A	TCGA-55-6543-01A-11D-1753-08		11152224	47976759	52	145559											
ZNF69	7620	broad.mit.edu	37	chr19	12015959	12015959	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actggagagaaaccatatgaAtgtaaacaatgtggtaaatc	9	5	0	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12015959	T	T	12015959	1	4	180	0	1	0	0	0	0	0	0	0	18222	116	4	5		5	ZNF69	19	12015959	Intron	SNP	A	TCGA-55-6543-01A-11D-1753-08	863735	12015959	47113024	53	145560											
DHDH	27294	broad.mit.edu	37	chr19	49445800	49445800	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaacacggcctccgtgagCggcaccaagggcatggtaca	12	14	0	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49445800	T	T	49445800	2	4	180	1	0	0	0	0	0	0	0	1	4519	767	27	4		4	DHDH	19	49445800	Silent	SNP	C	TCGA-55-6543-01A-11D-1753-08	37429841	49445800	9683183	54	145561											
C19orf51	352909	broad.mit.edu	37	chr19	55678043	55678043	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggaccacagcgagcaactGaccaatgagagtgagcgagg	15	9	0	3			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55678043	A	A	55678043	1	1	180	0	1	0	0	0	0	0	0	0	1952	1305	45	4		4	C19orf51	19	55678043	5'Flank	SNP	G	TCGA-55-6543-01A-11D-1753-08	6232243	55678043	3450940	55	145562											
U2AF2	11338	broad.mit.edu	37	chr19	56166481	56166481	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctcagcatgtcggactTcgacgagttcgagcggcagc	13	14	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56166481	A	A	56166481	3	1	180	1	0	0	0	0	1	0	0	0	16949	1783	62	5	13	5	U2AF2	19	56166481	Missense_Mutation	SNP	T	TCGA-55-6543-01A-11D-1753-08	488438	56166481	2962502	56	145563											
PHF20	51230	broad.mit.edu	37	chr20	34528978	34528978	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggagttggatggtagggctCcttcattggccccctgtgca	14	10	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34528978	T	T	34528978	1	4	180	0	1	0	0	0	0	0	0	0	11926	870	30	4		4	PHF20	20	34528978	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08		34528978	28496542	57	145564											
APCDD1L	164284	broad.mit.edu	37	chr20	57035851	57035851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcaagtccaatgtcataGccagtggaggaaggccagcc	12	10	2	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57035851	T	T	57035851	3	4	180	1	0	0	0	0	1	0	0	0	768	962	34	3	8	3	APCDD1L	20	57035851	Missense_Mutation	SNP	G	TCGA-55-6543-01A-11D-1753-08	22506873	57035851	5989669	58	145565											
PDE9A	5152	broad.mit.edu	37	chr21	44185571	44185571	+	Frame_Shift_Del	DEL	T	-	-													ttcaaagagaaaatggagaaTtttgactacagcaacgagga							TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44185571	-	-	44185571	7	5	180	1	0	1	0	1	0	0	0	0	11749	1490	52	0	1461	0	PDE9A	21	44185571	Frame_Shift_Del	DEL	T	TCGA-55-6543-01A-11D-1753-08		44185571	3944324	59	145566											
APOL4	80832	broad.mit.edu	37	chr22	36588021	36588021	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctgtaaaatgagctcaaTaagatctattctgcataaat	5	7	3	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36588021	C	C	36588021	1	2	180	0	1	0	0	0	0	0	0	0	810	1421	49	5		5	APOL4	22	36588021	Intron	SNP	T	TCGA-55-6543-01A-11D-1753-08		36588021	14716545	60	145567											
TOB2	10766	broad.mit.edu	37	chr22	41832900	41832915	+	Frame_Shift_Del	DEL	CAGGGAGCTGTCCTGG	-	-													gatggcgatggggagttggaCagggagctgtcctggctgcc							TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41832915	-	-	41832900	7	5	180	1	0	1	0	1	0	0	0	0	16471	465	17	0	588	0	TOB2	22	41832900	Frame_Shift_Del	DEL	CAGGGAGCTGTCCTGG	TCGA-55-6543-01A-11D-1753-08	5244879	41832900	9471666	61	145568											
WBP2NL	164684	broad.mit.edu	37	chr22	42339544	42339544	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgataagcattcccaatgtgCccactgtgtgctgaccaccc	8	15	0	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42339544	T	T	42339544	1	4	180	0	1	0	0	0	0	0	0	0	17387	754	26	4		4	WBP2NL	22	42339544	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08	506644	42339544	8965022	62	145569											
CLCN5	1184	broad.mit.edu	37	chrX	49777819	49777819	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctttctctctcctcccCcacccccctcccatgtgcag	3	22	3	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49777819	A	A	49777819	1	1	180	0	1	0	0	0	0	0	0	0	3497	638	22	2		2	CLCN5	23	49777819	Intron	SNP	C	TCGA-55-6543-01A-11D-1753-08		49777819	105492741	63	145570											
FGD1	2245	broad.mit.edu	37	chrX	54497770	54497770	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcttcgggcccggtgccCgcttcagtggtgaaggacgc	17	12	1	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54497770	T	T	54497770	3	4	180	1	0	0	0	0	1	0	0	0	5889	652	23	4	2495	4	FGD1	23	54497770	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08	4719951	54497770	100772790	64	145571											
CUL4B	8450	broad.mit.edu	37	chrX	119664014	119664014	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaggagattgtggctaagTgtctttctcatcttcataat	8	7	4	1			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119664014	A	A	119664014	2	1	180	1	0	0	0	0	0	0	0	1	4091	1683	59	5		5	CUL4B	23	119664014	Silent	SNP	T	TCGA-55-6543-01A-11D-1753-08	65166244	119664014	35606546	65	145572											
F9	2158	broad.mit.edu	37	chrX	138630558	138630558	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagaatggcagatgcgagcAgttttgtaaaaatagtgctg	12	4	0	2			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138630558	G	G	138630558	3	3	180	1	0	0	0	0	1	0	0	0	5397	188	7	5	446	5	F9	23	138630558	Missense_Mutation	SNP	A	TCGA-55-6543-01A-11D-1753-08	18966544	138630558	16640002	66	145573											
ARHGAP4	393	broad.mit.edu	37	chrX	153173206	153173206	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtggcttgggggtcgtgtCtaggccctgggggtgggaag	22	6	1	0			TCGA-55-6543-01A-11D-1753-08	TCGA-55-6543-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153173206	G	G	153173206	3	3	180	1	0	0	0	0	1	0	0	0	887	913	32	4	26	4	ARHGAP4	23	153173206	Missense_Mutation	SNP	C	TCGA-55-6543-01A-11D-1753-08	14542648	153173206	2097354	67	145574											
TAS1R2	80834	broad.mit.edu	37	chr1	19168239	19168239	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ataccttcagtgtggttgagGaaggtgccgggaaggcagtc	16	7	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19168239	A	A	19168239	2	1	181	1	0	0	0	0	0	0	0	1	15682	1165	41	4		4	TAS1R2	1	19168239	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08		19168239	230082382	1	145575											
PLA2G2A	5320	broad.mit.edu	37	chr1	20304750	20304750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagttccaacatgccgGctgcttttccagccaggcca	10	14	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20304750	T	T	20304750	1	4	181	0	1	0	0	0	0	0	0	0	12090	1218	42	3		3	PLA2G2A	1	20304750	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1136511	20304750	228945871	2	145576											
ALPL	249	broad.mit.edu	37	chr1	21894434	21894434	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgatttcatctccccacgCtggacaagtaaggcccagag	10	13	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21894434	T	T	21894434	1	4	181	0	1	0	0	0	0	0	0	0	547	812	28	4		4	ALPL	1	21894434	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1589684	21894434	227356187	3	145577											
STMN1	3925	broad.mit.edu	37	chr1	26215628	26215628	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacatgagatggcacacacaTttatgctgtctgaaggtcac	9	10	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26215628	A	A	26215628	1	1	181	0	1	0	0	0	0	0	0	0	15426	1508	52	5		5	STMN1	1	26215628	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	4321194	26215628	223034993	4	145578											
RPS6KA1	6195	broad.mit.edu	37	chr1	26899813	26899813	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagaaagacaagcttccCcaaagccagctgtcccacca	6	17	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26899813	A	A	26899813	2	1	181	1	0	0	0	0	0	0	0	1	13761	610	22	2		2	RPS6KA1	1	26899813	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	684185	26899813	222350808	5	145579											
STX12	23673	broad.mit.edu	37	chr1	28144412	28144412	+	Silent	SNP	C	T	T													aaagatttggccatgatgatCcatgaccagggtgatctgat							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28144412	T	T	28144412	2	4	181	1	0	0	0	0	0	0	0	1	15456	845	30	4		4	STX12	1	28144412	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	1244599	28144412	221106209	6	145580	625	2									
STX12	23673	broad.mit.edu	37	chr1	28144414	28144414	+	Missense_Mutation	SNP	A	C	C													agatttggccatgatgatccAtgaccagggtgatctgattg							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28144414	C	C	28144414	3	2	181	1	0	0	0	0	1	0	0	0	15456	217	8	5	655	5	STX12	1	28144414	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	2	28144414	221106207	7	145581	625	2									
PTP4A2	8073	broad.mit.edu	37	chr1	32377459	32377459	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccttttacattaaattgAtattttctccatgattaaca	3	7	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32377459	G	G	32377459	1	3	181	0	1	0	0	0	0	0	0	0	12877	348	12	5		5	PTP4A2	1	32377459	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	4233045	32377459	216873162	8	145582											
CSMD2	114784	broad.mit.edu	37	chr1	34092172	34092172	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattggaggtggccaagggcAgtgattctcctgccgagata	15	8	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34092172	T	T	34092172	3	4	181	1	0	0	0	0	1	0	0	0	3979	188	7	5	5521	5	CSMD2	1	34092172	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	1714713	34092172	215158449	9	145583											
GNL2	29889	broad.mit.edu	37	chr1	38059394	38059394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctatacatattcaggcGccggatggtggcccggtccc	12	13	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38059394	A	A	38059394	3	1	181	1	0	0	0	0	1	0	0	0	6600	1087	38	4	2137	4	GNL2	1	38059394	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	3967222	38059394	211191227	10	145584											
MAST2	23139	broad.mit.edu	37	chr1	46463467	46463467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttcttttgttcctgccCgtaggtaagttgataggaaa	9	7	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46463467	A	A	46463467	3	1	181	1	0	0	0	0	1	0	0	0	9417	652	23	1	686	1	MAST2	1	46463467	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	8404073	46463467	202787154	11	145585											
USP33	23032	broad.mit.edu	37	chr1	78207102	78207102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtccttggactttacaatCctgacaagtaccctataaaa	6	10	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78207102	A	A	78207102	3	1	181	1	0	0	0	0	1	0	0	0	17191	855	30	3	2741	3	USP33	1	78207102	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	31743635	78207102	171043519	12	145586											
AGL	178	broad.mit.edu	37	chr1	100343333	100343333	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaataactgcaacttatttCcagggagtacgtcttgataa	8	7	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100343333	T	T	100343333	2	4	181	1	0	0	0	0	0	0	0	1	384	854	30	4		4	AGL	1	100343333	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	22136231	100343333	148907288	13	145587											
CCDC76	54482	broad.mit.edu	37	chr1	100614308	100614308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtactatacagaccctctgGtgtctttggaaaatgttttg	9	7	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100614308	T	T	100614308	3	4	181	1	0	0	0	0	1	0	0	0	2878	1261	44	3	1420	3	CCDC76	1	100614308	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	270975	100614308	148636313	14	145588											
SYT6	148281	broad.mit.edu	37	chr1	114640500	114640500	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatctcattgtggcccactCtgagggagaaacaaaagtcc	10	10	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114640500	A	A	114640500	5	1	181	1	0	0	0	0	0	0	1	0	15597	927	32	3	176	3	SYT6	1	114640500	Splice_Site	SNP	C	TCGA-55-6642-01A-11D-1855-08	14026192	114640500	134610121	15	145589											
DENND2C	163259	broad.mit.edu	37	chr1	115141904	115141904	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatctcacctcttcaatGggtaggtcctggagctgtgg	11	10	4	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115141904	T	T	115141904	2	4	181	1	0	0	0	0	0	0	0	1	4470	1335	47	2		2	DENND2C	1	115141904	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	501404	115141904	134108717	16	145590											
VANGL1	81839	broad.mit.edu	37	chr1	116233804	116233804	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgacaaggaccgctggctctCtacacagtggaggcttgtca	12	11	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116233804	T	T	116233804	3	4	181	1	0	0	0	0	1	0	0	0	17246	913	32	4	1405	4	VANGL1	1	116233804	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	1091900	116233804	133016817	17	145591											
MAN1A2	10905	broad.mit.edu	37	chr1	118003128	118003128	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtggagtagggcgaaactGgggctgggcatctgcaggta	18	7	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118003128	T	T	118003128	3	4	181	1	0	0	0	0	1	0	0	0	9303	1357	47	2	994	2	MAN1A2	1	118003128	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1769324	118003128	131247493	18	145592											
NOTCH2	4853	broad.mit.edu	37	chr1	120510806	120510806	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgtcacacagtgccccCttgtggcaaggattgctgat	12	10	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120510806	A	A	120510806	3	1	181	1	0	0	0	0	1	0	0	0	10643	680	24	2	6369	2	NOTCH2	1	120510806	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	2507678	120510806	128739815	19	145593											
TXNIP	10628	broad.mit.edu	37	chr1	145438883	145438883	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacggcagtggcgagaaggtGgctggccgggtgatagtgga	20	6	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145438883	T	T	145438883	2	4	181	1	0	0	0	0	0	0	0	1	16929	1335	47	2		2	TXNIP	1	145438883	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	24928077	145438883	103811738	20	145594											
MTMR11	10903	broad.mit.edu	37	chr1	149906065	149906065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggagagcagcagggttgGggtgcactgggggatcacct	19	7	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149906065	T	T	149906065	1	4	181	0	1	0	0	0	0	0	0	0	10034	1247	43	2		2	MTMR11	1	149906065	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	4467182	149906065	99344556	21	145595											
VPS45	11311	broad.mit.edu	37	chr1	150049843	150049843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgatgatgccatcaccCcattgctaaaccaggtacaa	8	12	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150049843	A	A	150049843	3	1	181	1	0	0	0	0	1	0	0	0	17338	623	22	2	699	2	VPS45	1	150049843	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	143778	150049843	99200778	22	145596											
TARS2	80222	broad.mit.edu	37	chr1	150477199	150477199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgctggcagaaagctgcGgggggaaatggtgagacctc	18	7	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150477199	T	T	150477199	3	4	181	1	0	0	0	0	1	0	0	0	15679	1116	39	1	1868	1	TARS2	1	150477199	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	427356	150477199	98773422	23	145597											
LCE3E	353145	broad.mit.edu	37	chr1	152538635	152538635	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggacacttgggtgagGggcacttgggtgggggttgg	23	4	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152538635	T	T	152538635	3	4	181	1	0	0	0	0	1	0	0	0	8745	1232	43	2	232	2	LCE3E	1	152538635	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	2061436	152538635	96711986	24	145598											
LCE3D	84648	broad.mit.edu	37	chr1	152552130	152552130	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtctcagcatcaggatcCaggtcagcagcagcctccag	10	14	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152552130	A	A	152552130	1	1	181	0	1	0	0	0	0	0	0	0	8744	609	21	2		2	LCE3D	1	152552130	3'UTR	SNP	C	TCGA-55-6642-01A-11D-1855-08	13495	152552130	96698491	25	145599											
CHRNB2	1141	broad.mit.edu	37	chr1	154544242	154544242	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaccttctccatcgtcaccAgcgtgtgcgtgctcaacgtg	9	15	4	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154544242	T	T	154544242	3	4	181	1	0	0	0	0	1	0	0	0	3422	188	7	5	961	5	CHRNB2	1	154544242	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	1992112	154544242	94706379	26	145600											
ADAM15	8751	broad.mit.edu	37	chr1	155028462	155028462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcacactggaagtggccCtcttgctggacacagtgagt	12	12	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155028462	A	A	155028462	3	1	181	1	0	0	0	0	1	0	0	0	237	681	24	2	760	2	ADAM15	1	155028462	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	484220	155028462	94222159	27	145601											
IQGAP3	128239	broad.mit.edu	37	chr1	156504263	156504263	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtgagaagagggaagaAaggggacagagaggaaaggg	20	1	0	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156504263	G	G	156504263	1	3	181	0	1	0	0	0	0	0	0	0	7886	29	1	5		5	IQGAP3	1	156504263	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	1475801	156504263	92746358	28	145602											
CADM3	57863	broad.mit.edu	37	chr1	159170598	159170598	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtctctacacaggaacCtacctgacacatgaggcaaa	7	13	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159170598	A	A	159170598	2	1	181	1	0	0	0	0	0	0	0	1	2594	668	24	2		2	CADM3	1	159170598	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	2666335	159170598	90080023	29	145603											
ITLN1	55600	broad.mit.edu	37	chr1	160850401	160850401	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccatagggtgagtaataaGatgctgttttctgggcgtcg	15	6	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160850401	C	C	160850401	3	2	181	1	0	0	0	0	1	0	0	0	7980	942	33	4	291	4	ITLN1	1	160850401	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1679803	160850401	88400220	30	145604											
LMX1A	4009	broad.mit.edu	37	chr1	165183135	165183135	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatagcaaggcctccaggtCcacatttccaggatggcttt	9	13	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165183135	A	A	165183135	1	1	181	0	1	0	0	0	0	0	0	0	8935	870	30	3		3	LMX1A	1	165183135	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	4332734	165183135	84067486	31	145605											
FMO4	2329	broad.mit.edu	37	chr1	171303751	171303751	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgaagaacctcttaaaagCctctgtacaaagaagatatt	6	7	2	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171303751	T	T	171303751	2	4	181	1	0	0	0	0	0	0	0	1	6015	738	26	4		4	FMO4	1	171303751	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	6120616	171303751	77946870	32	145606											
TNN	63923	broad.mit.edu	37	chr1	175092548	175092548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaagaaattgacggccCcaaaaacctagtgactgact	7	9	0	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175092548	A	A	175092548	3	1	181	1	0	0	0	0	1	0	0	0	16446	623	22	2	2705	2	TNN	1	175092548	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	3788797	175092548	74158073	33	145607											
TNR	7143	broad.mit.edu	37	chr1	175375611	175375611	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggcctctagccctgaGgagcagaggttgtccaaggg	16	10	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175375611	T	T	175375611	2	4	181	1	0	0	0	0	0	0	0	1	16461	987	35	2		2	TNR	1	175375611	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	283063	175375611	73875010	34	145608											
C1orf49	84066	broad.mit.edu	37	chr1	178489785	178489785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctccccaactctctgccCctccctggccctcctccccc	4	25	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178489785	A	A	178489785	1	1	181	0	1	0	0	0	0	0	0	0	2063	638	22	2		2	C1orf49	1	178489785	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	3114174	178489785	70760836	35	145609											
DHX9	1660	broad.mit.edu	37	chr1	182853798	182853798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtatcactggtctccGggcagccatggaggctttgg	14	11	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182853798	T	T	182853798	3	4	181	1	0	0	0	0	1	0	0	0	4556	1116	39	1	3413	1	DHX9	1	182853798	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	4364013	182853798	66396823	36	145610											
RGS2	5997	broad.mit.edu	37	chr1	192778168	192778168	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcgacgcacgcccagcCgcaaacagccggggctccag	13	17	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192778168	A	A	192778168	1	1	181	0	1	0	0	0	0	0	0	0	13411	667	23	1		1	RGS2	1	192778168	5'Flank	SNP	C	TCGA-55-6642-01A-11D-1855-08	9924370	192778168	56472453	37	145611											
NFASC	23114	broad.mit.edu	37	chr1	204966230	204966230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcctgccttgcacgcgGgggccgtgtgtccaggctgg	18	13	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204966230	T	T	204966230	1	4	181	0	1	0	0	0	0	0	0	0	10454	1247	43	2		2	NFASC	1	204966230	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	12188062	204966230	44284391	38	145612											
RPS6KC1	26750	broad.mit.edu	37	chr1	213415205	213415205	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctttgttacccagctcaGatcctaagtttcaaggactt	7	10	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	213415205	T	T	213415205	3	4	181	1	0	0	0	0	1	0	0	0	13769	942	33	3	2428	3	RPS6KC1	1	213415205	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	8448975	213415205	35835416	39	145613											
USH2A	7399	broad.mit.edu	37	chr1	215956216	215956216	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagctttgctgagtcctcgCccatagctgttccaggcaga	10	13	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215956216	T	T	215956216	2	4	181	1	0	0	0	0	0	0	0	1	17162	726	26	4		4	USH2A	1	215956216	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	2541011	215956216	33294405	40	145614											
ESRRG	2104	broad.mit.edu	37	chr1	216850479	216850479	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctaccccatagtggtaCccagaagcgatgtcaccaca	9	13	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216850479	A	A	216850479	2	1	181	1	0	0	0	0	0	0	0	1	5304	494	18	3		3	ESRRG	1	216850479	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	894263	216850479	32400142	41	145615											
RYR2	6262	broad.mit.edu	37	chr1	237880622	237880622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttgaacatctgtgcccCtggggaccaggagctcattg	14	10	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237880622	A	A	237880622	3	1	181	1	0	0	0	0	1	0	0	0	13880	681	24	2	10734	2	RYR2	1	237880622	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	21030143	237880622	11369999	42	145616											
ZNF669	79862	broad.mit.edu	37	chr1	247264932	247264932	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttctaaaaataaataaAtttcaagtgactcttatttg	3	4	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247264932	C	C	247264932	1	2	181	0	1	0	0	0	0	0	0	0	18203	116	4	5		5	ZNF669	1	247264932	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	9384310	247264932	1985689	43	145617											
OR2L13	284521	broad.mit.edu	37	chr1	248138231	248138231	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccatttatttcttacttaGtcggctctacctcattgacc	5	13	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248138231	C	C	248138231	1	2	181	0	1	0	0	0	0	0	0	0	11100	1044	36	4		4	OR2L13	1	248138231	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	873299	248138231	1112390	44	145618											
OR2T34	127068	broad.mit.edu	37	chr1	248738098	248738098	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgaggaaaaaaaagtcatTaattttaaatctttcctatg	5	6	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248738098	C	C	248738098	1	2	181	0	1	0	0	0	0	0	0	0	11119	1769	61	5		5	OR2T34	1	248738098	5'Flank	SNP	T	TCGA-55-6642-01A-11D-1855-08	599867	248738098	512523	45	145619											
ASAP2	8853	broad.mit.edu	37	chr2	9543307	9543307	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttttcttcaccaaacgCtctatgtaatgctcttcaaa	4	11	5	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9543307	G	G	9543307	1	3	181	0	1	0	0	0	0	0	0	0	1015	812	28	4		4	ASAP2	2	9543307	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		9543307	233656066	46	145620											
KIF3C	3797	broad.mit.edu	37	chr2	26151869	26151869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcatggtccgccactgttGcagggcgcagagaagcagag	14	11	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26151869	T	T	26151869	3	4	181	1	0	0	0	0	1	0	0	0	8372	1319	46	3	25	3	KIF3C	2	26151869	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	16608562	26151869	217047504	47	145621											
OTOF	9381	broad.mit.edu	37	chr2	26684489	26684490	+	Intron	DNP	CC	AA	AA													ccccccaaggcagggctctcCctgtccccgccaacccggcc							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26684490	AA	AA	26684489	1	1	181	0	1	0	0	0	0	0	0	0	11397	638	22	2		2	OTOF	2	26684489	Intron	DNP	CC	TCGA-55-6642-01A-11D-1855-08	532620	26684489	216514884	48	145622											
TMEM214	54867	broad.mit.edu	37	chr2	27259483	27259483	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagggaaatagggaagaaAgagggagggtctcggagctg	18	4	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27259483	C	C	27259483	1	2	181	0	1	0	0	0	0	0	0	0	16260	87	3	5		5	TMEM214	2	27259483	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	574994	27259483	215939890	49	145623											
MPV17	4358	broad.mit.edu	37	chr2	27535444	27535444	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcagcctagaaaacacgGggcaaagcccccctagggaa	11	12	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27535444	A	A	27535444	3	1	181	1	0	0	0	0	1	0	0	0	9839	1232	43	4	254	4	MPV17	2	27535444	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	275961	27535444	215663929	50	145624											
XDH	7498	broad.mit.edu	37	chr2	31599911	31599911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtttcattgtgctgttaGctcttacttggaaagctgcc	10	9	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31599911	T	T	31599911	1	4	181	0	1	0	0	0	0	0	0	0	17553	986	34	3		3	XDH	2	31599911	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	4064467	31599911	211599462	51	145625											
FAM98A	25940	broad.mit.edu	37	chr2	33810046	33810046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacgatcaccatggtgccCgccatcttggtatctattgt	8	13	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33810046	A	A	33810046	3	1	181	1	0	0	0	0	1	0	0	0	5713	652	23	1	206	1	FAM98A	2	33810046	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	2210135	33810046	209389327	52	145626											
FEZ2	9637	broad.mit.edu	37	chr2	36818170	36818170	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatccttaaaaagaagaaaGctacaatcaatgaaaattaa	4	5	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36818170	A	A	36818170	1	1	181	0	1	0	0	0	0	0	0	0	5881	986	34	4		4	FEZ2	2	36818170	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	3008124	36818170	206381203	53	145627											
THUMPD2	80745	broad.mit.edu	37	chr2	39988520	39988520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgctattgtagatcgcagtCcagctgtcttgatgtaagct	10	9	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39988520	A	A	39988520	3	1	181	1	0	0	0	0	1	0	0	0	16006	855	30	3	689	3	THUMPD2	2	39988520	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	3170350	39988520	203210853	54	145628											
SPTBN1	6711	broad.mit.edu	37	chr2	54712255	54712255	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccgttcagtaaggaaccaGaaaaaataaaatattgaaaa	6	5	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54712255	C	C	54712255	1	2	181	0	1	0	0	0	0	0	0	0	15237	957	33	4		4	SPTBN1	2	54712255	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	14723735	54712255	188487118	55	145629											
TCF7L1	83439	broad.mit.edu	37	chr2	85536593	85536593	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcccactaagctccccCcgacccctgcaggctgtcac	8	20	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85536593	A	A	85536593	1	1	181	0	1	0	0	0	0	0	0	0	15819	638	22	2		2	TCF7L1	2	85536593	3'UTR	SNP	C	TCGA-55-6642-01A-11D-1855-08	30824338	85536593	157662780	56	145630											
RMND5A	64795	broad.mit.edu	37	chr2	87113885	87113885	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtcacttctccttaacAggaaagggtaggctgggtgc	13	9	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87113885	T	T	87113885	1	4	181	0	1	0	0	0	0	0	0	0	13508	203	7	5		5	RMND5A	2	87113885	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	1577292	87113885	156085488	57	145631											
CNGA3	1261	broad.mit.edu	37	chr2	99012411	99012411	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttgtccctggtccccaccGacctggcttacttaaaggtg	10	13	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99012411	C	C	99012411	3	2	181	1	0	0	0	0	1	0	0	0	3630	1058	37	4	804	4	CNGA3	2	99012411	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	11898526	99012411	144186962	58	145632											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105896810	105896810	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagggtgcagggcgggaagcCctgatcatatcaggaaggga	17	7	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105896810	T	T	105896810	1	4	181	0	1	0	0	0	0	0	0	0	15947	638	22	4		4	TGFBRAP1	2	105896810	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	6884399	105896810	137302563	59	145633											
DPP10	57628	broad.mit.edu	37	chr2	116594010	116594010	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgacaattaaatgtaaaatGaagaaattaatgaaatatgc	6	2	0	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116594010	T	T	116594010	1	4	181	0	1	0	0	0	0	0	0	0	4767	1305	45	3		3	DPP10	2	116594010	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	10697200	116594010	126605363	60	145634											
TMEM177	80775	broad.mit.edu	37	chr2	120438630	120438630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagcctcttccaagaGgtgctacaggacataggtgt	12	10	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120438630	T	T	120438630	3	4	181	1	0	0	0	0	1	0	0	0	16217	991	35	2	203	2	TMEM177	2	120438630	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	3844620	120438630	122760743	61	145635											
WDR33	55339	broad.mit.edu	37	chr2	128481960	128481960	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccaagaggatgccaagcCagactccagatcatcccttc	8	15	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128481960	A	A	128481960	2	1	181	1	0	0	0	0	0	0	0	1	17414	581	21	2		2	WDR33	2	128481960	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	8043330	128481960	114717413	62	145636											
POTEE	445582	broad.mit.edu	37	chr2	131995710	131995710	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaaacatgcgctccaaaaGaggagacatcacagaaacac	7	10	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131995710	T	T	131995710	1	4	181	0	1	0	0	0	0	0	0	0	12360	957	33	3		3	POTEE	2	131995710	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	3513750	131995710	111203663	63	145637											
LRP1B	53353	broad.mit.edu	37	chr2	141777755	141777755	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tactaatagctacctaataaAaactttagttcaaaaaggaa	4	6	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141777755	T	T	141777755	1	4	181	0	1	0	0	0	0	0	0	0	9042	29	1	5		5	LRP1B	2	141777755	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	9782045	141777755	101421618	64	145638											
SLC4A10	57282	broad.mit.edu	37	chr2	162807357	162807357	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggaaagagcataagctaaAggtatattttaacatccatt	7	6	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162807357	T	T	162807357	3	4	181	1	0	0	0	0	1	0	0	0	14765	86	3	5	2699	5	SLC4A10	2	162807357	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	21029602	162807357	80392016	65	145639											
XIRP2	129446	broad.mit.edu	37	chr2	167992572	167992573	+	Splice_Site	DNP	GG	TT	TT													gtcacagccgcatctttgaaGgttagcataacattttgata							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	167992573	TT	TT	167992572	5	4	181	1	0	0	0	0	0	0	1	0	17557	1014	35	2	568	2	XIRP2	2	167992572	Splice_Site	DNP	GG	TCGA-55-6642-01A-11D-1855-08	5185215	167992572	75206801	66	145640											
CALCRL	10203	broad.mit.edu	37	chr2	188223675	188223675	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctattcatttaagcactgtGaacatgcatgtccatctgtg	8	9	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188223675	A	A	188223675	1	1	181	0	1	0	0	0	0	0	0	0	2606	1305	45	4		4	CALCRL	2	188223675	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	20231103	188223675	54975698	67	145641											
DNAH7	56171	broad.mit.edu	37	chr2	196636407	196636407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgctttttgaatatttaCgcacgaatctcttatggtct	7	7	2	1	rs113133988		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196636407	A	A	196636407	3	1	181	1	0	0	0	0	1	0	0	0	4646	536	19	3	684	3	DNAH7	2	196636407	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	8412732	196636407	46562966	68	145642											
BOLL	66037	broad.mit.edu	37	chr2	198646540	198646541	+	Missense_Mutation	DNP	GG	TT	TT													tcaaaggcacaggtgacacaGgattaggggatggagataat							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	198646541	TT	TT	198646540	3	4	181	1	0	0	0	0	1	0	0	0	1495	1000	35	2	856	2	BOLL	2	198646540	Missense_Mutation	DNP	GG	TCGA-55-6642-01A-11D-1855-08	2010133	198646540	44552833	69	145643											
PARD3B	117583	broad.mit.edu	37	chr2	206480505	206480505	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaccgaacccaggattccCggcagaagaaccccatgact	8	15	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206480505	A	A	206480505	2	1	181	1	0	0	0	0	0	0	0	1	11538	643	23	1		1	PARD3B	2	206480505	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	7833965	206480505	36718868	70	145644											
NRP2	8828	broad.mit.edu	37	chr2	206562130	206562130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaccgaatgagtaagtaGgttagtcttctggactgcca	10	9	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206562130	T	T	206562130	1	4	181	0	1	0	0	0	0	0	0	0	10756	1015	35	2		2	NRP2	2	206562130	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	81625	206562130	36637243	71	145645											
FN1	2335	broad.mit.edu	37	chr2	216235151	216235151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtagaagttccaggaaccCtgaactgcaattatcggtac	10	9	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216235151	A	A	216235151	3	1	181	1	0	0	0	0	1	0	0	0	6020	681	24	2	738	2	FN1	2	216235151	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	9673021	216235151	26964222	72	145646											
COL4A4	1286	broad.mit.edu	37	chr2	227917162	227917162	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatgcaagaacaaaatgaaCaggaacatcacacacataat	5	8	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227917162	G	G	227917162	1	3	181	0	1	0	0	0	0	0	0	0	3725	493	17	4		4	COL4A4	2	227917162	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	11682011	227917162	15282211	73	145647											
SP100	6672	broad.mit.edu	37	chr2	231327148	231327148	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtttttgctcctttgtgcAgtcatcagcagtgaggactc	11	9	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231327148	T	T	231327148	5	4	181	1	0	0	0	0	0	0	1	0	15074	202	7	5	1010	5	SP100	2	231327148	Splice_Site	SNP	A	TCGA-55-6642-01A-11D-1855-08	3409986	231327148	11872225	74	145648											
DGKD	8527	broad.mit.edu	37	chr2	234346823	234346823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgccctcagcgtcttcCgtggcctatatattttcttc	9	12	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234346823	A	A	234346823	1	1	181	0	1	0	0	0	0	0	0	0	4507	667	23	1		1	DGKD	2	234346823	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	3019675	234346823	8852550	75	145649											
D2HGDH	728294	broad.mit.edu	37	chr2	242707057	242707057	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggatcttgggaggggctGttgggggaggagtggggtcc	24	4	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242707057	T	T	242707057	1	4	181	0	1	0	0	0	0	0	0	0	4246	1392	48	3		3	D2HGDH	2	242707057	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	8360234	242707057	492316	76	145650											
SETD5	55209	broad.mit.edu	37	chr3	9488802	9488802	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagagaaaagaaagaagcgGcgggatcagcccttggaaca	13	7	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9488802	A	A	9488802	2	1	181	1	0	0	0	0	0	0	0	1	14247	1190	42	4		4	SETD5	3	9488802	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08		9488802	188533628	77	145651											
CPNE9	151835	broad.mit.edu	37	chr3	9768985	9768985	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacttttttcccccgtcactCtttcatcctttctcattcat	1	15	5	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9768985	A	A	9768985	1	1	181	0	1	0	0	0	0	0	0	0	3851	928	32	3		3	CPNE9	3	9768985	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	280183	9768985	188253445	78	145652											
ATG7	10533	broad.mit.edu	37	chr3	11340999	11340999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggactagggaagttccCggtgggcagagtcagccccc	16	11	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11340999	A	A	11340999	1	1	181	0	1	0	0	0	0	0	0	0	1105	667	23	1		1	ATG7	3	11340999	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1572014	11340999	186681431	79	145653											
TMEM40	55287	broad.mit.edu	37	chr3	12777035	12777035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaatgagtgaacacaGgaagactttaaaagttacct	10	5	0	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12777035	T	T	12777035	1	4	181	0	1	0	0	0	0	0	0	0	16286	1015	35	2		2	TMEM40	3	12777035	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1436036	12777035	185245395	80	145654											
FBXL2	25827	broad.mit.edu	37	chr3	33427034	33427034	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccacgcctactttgctccCgtcaccccaccgacagcagt	7	19	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33427034	A	A	33427034	2	1	181	1	0	0	0	0	0	0	0	1	5773	639	23	1		1	FBXL2	3	33427034	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	20649999	33427034	164595396	81	145655											
SCN10A	6336	broad.mit.edu	37	chr3	38802666	38802666	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagaccttggtccctatgGaagagactccactcacgttt	8	13	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38802666	T	T	38802666	1	4	181	0	1	0	0	0	0	0	0	0	14025	1189	41	3		3	SCN10A	3	38802666	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	5375632	38802666	159219764	82	145656											
NT5DC2	64943	broad.mit.edu	37	chr3	52562150	52562150	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggctgtcccactgtgGctggacttagtctttcctgc	14	11	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52562150	C	C	52562150	1	2	181	0	1	0	0	0	0	0	0	0	10786	1218	42	4		4	NT5DC2	3	52562150	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	13759484	52562150	145460280	83	145657											
C3orf14	57415	broad.mit.edu	37	chr3	62317051	62317051	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggattcacccacttccaCggcctgaggtggtttctctt	9	14	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62317051	T	T	62317051	3	4	181	1	0	0	0	0	1	0	0	0	2230	527	19	4	239	4	C3orf14	3	62317051	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	9754901	62317051	135705379	84	145658											
OR5K1	26339	broad.mit.edu	37	chr3	98188897	98188897	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacctgcattccatgattcaTgtagggcttgtatttaggtt	9	7	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98188897	A	A	98188897	3	1	181	1	0	0	0	0	1	0	0	0	11260	1461	51	5	479	5	OR5K1	3	98188897	Missense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	35871846	98188897	99833533	85	145659											
NR1I2	8856	broad.mit.edu	37	chr3	119535877	119535877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggcttgtgggtcagggcGggctgcacccacaatctttt	14	10	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119535877	T	T	119535877	1	4	181	0	1	0	0	0	0	0	0	0	10715	1131	39	1		1	NR1I2	3	119535877	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	21346980	119535877	78486553	86	145660											
KALRN	8997	broad.mit.edu	37	chr3	124397190	124397190	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattccggagctgcgtcccCacctgtcatccactcccacc	7	19	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124397190	A	A	124397190	1	1	181	0	1	0	0	0	0	0	0	0	8045	609	21	2		2	KALRN	3	124397190	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	4861313	124397190	73625240	87	145661											
GATA2	2624	broad.mit.edu	37	chr3	128200650	128200650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcggggtggccggggcgGggcgcactcacattgtgcag	22	10	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128200650	T	T	128200650	1	4	181	0	1	0	0	0	0	0	0	0	6316	1247	43	2		2	GATA2	3	128200650	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	3803460	128200650	69821780	88	145662											
MED12L	116931	broad.mit.edu	37	chr3	150877531	150877531	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgaagtttttttatctttTttaaatgaaaaaaagtctgt	5	2	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150877531	A	A	150877531	1	1	181	0	1	0	0	0	0	0	0	0	9522	1856	64	5		5	MED12L	3	150877531	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	22676881	150877531	47144899	89	145663											
P2RY14	9934	broad.mit.edu	37	chr3	150931440	150931440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgaccgaagtggaattcCgacttgacttaaggtgggac	12	7	0	2	rs150238875		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150931440	A	A	150931440	3	1	181	1	0	0	0	0	1	0	0	0	11445	652	23	1	355	1	P2RY14	3	150931440	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	53909	150931440	47090990	90	145664											
GOLIM4	27333	broad.mit.edu	37	chr3	167750375	167750375	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctgctctttccactccCgatcctgctcctctggtgat	7	16	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167750375	A	A	167750375	3	1	181	1	0	0	0	0	1	0	0	0	6630	652	23	1	1013	1	GOLIM4	3	167750375	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	16818935	167750375	30272055	91	145665											
SORCS2	57537	broad.mit.edu	37	chr4	7640005	7640005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaacacctttctggtgtcGggggagaggggcacctggcc	15	12	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7640005	T	T	7640005	1	4	181	0	1	0	0	0	0	0	0	0	15045	1131	39	1		1	SORCS2	4	7640005	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08		7640005	183514271	92	145666											
GABRA2	2555	broad.mit.edu	37	chr4	46252550	46252550	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaactggatcttttgaaagAttcggggcataattggcaac	11	6	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46252550	T	T	46252550	3	4	181	1	0	0	0	0	1	0	0	0	6221	330	12	5	228	5	GABRA2	4	46252550	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	38612545	46252550	144901726	93	145667											
RASL11B	65997	broad.mit.edu	37	chr4	53728706	53728706	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaacatgtgcaccatcgCcgagtaccccgcgccgggca	11	16	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53728706	A	A	53728706	3	1	181	1	0	0	0	0	1	0	0	0	13190	739	26	3	34	3	RASL11B	4	53728706	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	7476156	53728706	137425570	94	145668											
TECRL	253017	broad.mit.edu	37	chr4	65188545	65188545	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagaaaattttattttaaTacaatttcttagcataacga	3	5	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65188545	A	A	65188545	1	1	181	0	1	0	0	0	0	0	0	0	15868	1421	49	5		5	TECRL	4	65188545	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	11459839	65188545	125965731	95	145669											
ANKRD56	345079	broad.mit.edu	37	chr4	77817780	77817780	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctttgggcccactgctgCtctcctcactgccatcactc	7	17	4	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77817780	A	A	77817780	3	1	181	1	0	0	0	0	1	0	0	0	682	797	28	3	1162	3	ANKRD56	4	77817780	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	12629235	77817780	113336496	96	145670											
C4orf37	285555	broad.mit.edu	37	chr4	99055589	99055589	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactttctctggcagtcaaaGaaagaaatggtgcattacta	8	7	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99055589	A	A	99055589	3	1	181	1	0	0	0	0	1	0	0	0	2290	942	33	4	1288	4	C4orf37	4	99055589	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	21237809	99055589	92098687	97	145671											
AGXT2L1	64850	broad.mit.edu	37	chr4	109663809	109663809	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctccagtgggcatccacctCtaatccagcctccacaggac	8	17	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109663809	G	G	109663809	1	3	181	0	1	0	0	0	0	0	0	0	406	928	32	4		4	AGXT2L1	4	109663809	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	10608220	109663809	81490467	98	145672											
ALPK1	80216	broad.mit.edu	37	chr4	113278023	113278023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccttaaggggacggtcGtgatctttgatgaaactcac	11	8	2	4	rs141498995	by1000genomes	TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113278023	T	T	113278023	1	4	181	0	1	0	0	0	0	0	0	0	544	1160	40	3		3	ALPK1	4	113278023	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	3614214	113278023	77876253	99	145673											
SYNPO2	171024	broad.mit.edu	37	chr4	119947974	119947974	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaccaaagaagtggtccCgactgtgcaggcagcttgaa	13	9	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119947974	A	A	119947974	2	1	181	1	0	0	0	0	0	0	0	1	15576	639	23	1		1	SYNPO2	4	119947974	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	6669951	119947974	71206302	100	145674											
C4orf27	54969	broad.mit.edu	37	chr4	170652978	170652978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaagcttttagtctctcCtcatcacttgcagcctcaac	5	14	4	0	rs1047673		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170652978	A	A	170652978	3	1	181	1	0	0	0	0	1	0	0	0	2281	680	24	2	262	2	C4orf27	4	170652978	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	50705004	170652978	20501298	101	145675											
GPM6A	2823	broad.mit.edu	37	chr4	176883340	176883340	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgagcacctgctttctttGcccctggagtattggagtca	10	11	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176883340	T	T	176883340	1	4	181	0	1	0	0	0	0	0	0	0	6680	1334	46	3		3	GPM6A	4	176883340	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	6230362	176883340	14270936	102	145676											
MTNR1A	4543	broad.mit.edu	37	chr4	187454987	187454987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataattctcctgtattccttCctgaaattttggttcagtag	6	8	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187454987	A	A	187454987	3	1	181	1	0	0	0	0	1	0	0	0	10045	854	30	3	147	3	MTNR1A	4	187454987	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	10571647	187454987	3699289	103	145677											
PDCD6	10016	broad.mit.edu	37	chr5	289563	289563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttctgtacgcgctgccGggtacaacggctttctttgt	10	13	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	289563	T	T	289563	1	4	181	0	1	0	0	0	0	0	0	0	11717	1131	39	1		1	PDCD6	5	289563	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08		289563	180625697	104	145678											
DNAH5	1767	broad.mit.edu	37	chr5	13721350	13721350	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagtccacgatgtacttgCgggcctgccaaaaacagtat	11	10	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13721350	G	G	13721350	3	3	181	1	0	0	0	0	1	0	0	0	4644	768	27	4	1872	4	DNAH5	5	13721350	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	13431787	13721350	167193910	105	145679											
TRIO	7204	broad.mit.edu	37	chr5	14336588	14336588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatatattatggcgcccagCctggctggtctgcttttcac	9	12	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14336588	T	T	14336588	1	4	181	0	1	0	0	0	0	0	0	0	16677	754	26	4		4	TRIO	5	14336588	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	615238	14336588	166578672	106	145680											
ADAMTS12	81792	broad.mit.edu	37	chr5	33891751	33891751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagttcagttctgccggGtgggggaagggaaaggggag	20	5	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33891751	T	T	33891751	1	4	181	0	1	0	0	0	0	0	0	0	257	1276	44	3		3	ADAMTS12	5	33891751	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	19555163	33891751	147023509	107	145681											
SPEF2	79925	broad.mit.edu	37	chr5	35644672	35644672	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattcattagtgcatagtatAcagtttgtgatttatgcgta	8	4	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35644672	T	T	35644672	1	4	181	0	1	0	0	0	0	0	0	0	15153	406	14	5		5	SPEF2	5	35644672	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	1752921	35644672	145270588	108	145682											
SPEF2	79925	broad.mit.edu	37	chr5	35740120	35740120	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgagggaagaccagcatActgtgcttgcttacttatat	9	8	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35740120	G	G	35740120	3	3	181	1	0	0	0	0	1	0	0	0	15153	391	14	5	3270	5	SPEF2	5	35740120	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	95448	35740120	145175140	109	145683											
DAB2	1601	broad.mit.edu	37	chr5	39382667	39382671	+	Intron	DEL	CTTTG	-	-													agagcttgcatcacaccaccCtttggtaccgaacatgcact							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39382671	-	-	39382667	6	5	181	0	1	1	0	1	0	0	0	0	4251	696	24	0		0	DAB2	5	39382667	Intron	DEL	CTTTG	TCGA-55-6642-01A-11D-1855-08	3642547	39382667	141532593	110	145684											
PTGER4	5734	broad.mit.edu	37	chr5	40692161	40692161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcgctccttcatctcccGggagctgaaggagatcagca	10	14	4	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40692161	T	T	40692161	3	4	181	1	0	0	0	0	1	0	0	0	12851	1116	39	1	1154	1	PTGER4	5	40692161	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1309494	40692161	140223099	111	145685											
C7	730	broad.mit.edu	37	chr5	40964946	40964946	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtggagaagatttacGgtggcttgttggggaaatgc	16	4	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40964946	C	C	40964946	3	2	181	1	0	0	0	0	1	0	0	0	2400	1116	39	4	1907	4	C7	5	40964946	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	272785	40964946	139950314	112	145686											
GHR	2690	broad.mit.edu	37	chr5	42695245	42695245	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttagactaaataaatgggGaagcctgcaaggtccaagta	10	6	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42695245	T	T	42695245	1	4	181	0	1	0	0	0	0	0	0	0	6435	1189	41	3		3	GHR	5	42695245	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1730299	42695245	138220015	113	145687											
GPX8	493869	broad.mit.edu	37	chr5	54456928	54456928	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatcccacttcagcgtgtTggcttttccctgcaatcagt	7	14	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54456928	A	A	54456928	4	1	181	1	0	0	0	0	0	1	0	0	6812	1821	63	5	317	5	GPX8	5	54456928	Nonsense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	11761683	54456928	126458332	114	145688											
PLK2	10769	broad.mit.edu	37	chr5	57750974	57750974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttggaaatccctgcctcCacctcccggagattctgatt	8	14	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57750974	A	A	57750974	1	1	181	0	1	0	0	0	0	0	0	0	12191	609	21	2		2	PLK2	5	57750974	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	3294046	57750974	123164286	115	145689											
NDUFAF2	91942	broad.mit.edu	37	chr5	60394783	60394783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtttgtgtaaattatGggaaactgacatttaaatat	7	2	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60394783	T	T	60394783	1	4	181	0	1	0	0	0	0	0	0	0	10370	1363	47	2		2	NDUFAF2	5	60394783	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2643809	60394783	120520477	116	145690											
DMGDH	29958	broad.mit.edu	37	chr5	78351744	78351744	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacctgccttaaaagcagaGaggaaaagaaatactgaaaa	8	6	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78351744	T	T	78351744	1	4	181	0	1	0	0	0	0	0	0	0	4621	957	33	3		3	DMGDH	5	78351744	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	17956961	78351744	102563516	117	145691											
SSBP2	23635	broad.mit.edu	37	chr5	80724479	80724479	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtgcccggttgattactCaggctcatattattgggaga	13	7	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80724479	A	A	80724479	2	1	181	1	0	0	0	0	0	0	0	1	15298	813	29	3		3	SSBP2	5	80724479	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	2372735	80724479	100190781	118	145692											
TTC37	9652	broad.mit.edu	37	chr5	94865853	94865853	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaatgctttaatgcctaAgccaatgaggcctggaccac	9	10	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94865853	C	C	94865853	3	2	181	1	0	0	0	0	1	0	0	0	16831	69	3	5	3994	5	TTC37	5	94865853	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	14141374	94865853	86049407	119	145693											
PCDHA4	56144	broad.mit.edu	37	chr5	140188265	140188265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactcgctggtagagcggcGggtaggggagcgcgcgctgt	19	10	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140188265	T	T	140188265	3	4	181	1	0	0	0	0	1	0	0	0	11620	1116	39	1	1495	1	PCDHA4	5	140188265	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	45322412	140188265	40726995	120	145694											
PCDHA8	56140	broad.mit.edu	37	chr5	140221014	140221014	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctccactactccgtcccCgaggaggccaaacacggcac	9	18	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140221014	A	A	140221014	2	1	181	1	0	0	0	0	0	0	0	1	11624	639	23	1		1	PCDHA8	5	140221014	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	32749	140221014	40694246	121	145695											
PCDHB2	56133	broad.mit.edu	37	chr5	140476407	140476407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctgctgctcccggaggCggcaccggcccaggcccagg	14	18	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140476407	A	A	140476407	3	1	181	1	0	0	0	0	1	0	0	0	11636	768	27	3	2035	3	PCDHB2	5	140476407	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	255393	140476407	40438853	122	145696											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725310	140725310	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccccgccctccccacagaCggttccactggcgtggagct	10	18	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140725310	T	T	140725310	2	4	181	1	0	0	0	0	0	0	0	1	11649	535	19	4		4	PCDHGA3	5	140725310	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	248903	140725310	40189950	123	145697											
SPINK1	6690	broad.mit.edu	37	chr5	147209109	147209109	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcaaggctgcatttttgTtggatcaaactgttccagtc	9	9	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147209109	C	C	147209109	1	2	181	0	1	0	0	0	0	0	0	0	15175	1740	60	5		5	SPINK1	5	147209109	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	6483799	147209109	33706151	124	145698											
PDE6A	5145	broad.mit.edu	37	chr5	149286941	149286942	+	Splice_Site	DNP	CC	AG	AG													caatggtcaggaggtggattCctgtgaaggccaaagacaaa							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	149286942	AG	AG	149286941	5	1	181	1	0	0	0	0	0	0	1	0	11739	869	30	3	1647	3	PDE6A	5	149286941	Splice_Site	DNP	CC	TCGA-55-6642-01A-11D-1855-08	2077832	149286941	31628319	125	145699											
PDGFRB	5159	broad.mit.edu	37	chr5	149499158	149499158	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcagagacaagagatacaCaggctcaggggtggaaaagt	15	6	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149499158	G	G	149499158	1	3	181	0	1	0	0	0	0	0	0	0	11756	493	17	4		4	PDGFRB	5	149499158	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	212217	149499158	31416102	126	145700											
ADAM19	8728	broad.mit.edu	37	chr5	156945996	156945996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggataagcagcagctacCtccgtaatgattttgtcatt	9	9	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156945996	A	A	156945996	1	1	181	0	1	0	0	0	0	0	0	0	240	696	24	2		2	ADAM19	5	156945996	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	7446838	156945996	23969264	127	145701											
ARL10	285598	broad.mit.edu	37	chr5	175795767	175795767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggctgtgggcagtgagcGggggcccgggaggctctgag	24	8	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175795767	T	T	175795767	1	4	181	0	1	0	0	0	0	0	0	0	928	1131	39	1		1	ARL10	5	175795767	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	18849771	175795767	5119493	128	145702											
ADAMTS2	9509	broad.mit.edu	37	chr5	178552041	178552041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggcccggcggctctcgGgccgggcgtcattgcagtgc	17	14	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178552041	T	T	178552041	3	4	181	1	0	0	0	0	1	0	0	0	265	1232	43	2	760	2	ADAMTS2	5	178552041	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	2756274	178552041	2363219	129	145703											
ATXN1	6310	broad.mit.edu	37	chr6	16327605	16327605	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggatggcctgctgcagccGgctgctctcagctttcttgg	13	13	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16327605	A	A	16327605	3	1	181	1	0	0	0	0	1	0	0	0	1213	1115	39	4	1518	4	ATXN1	6	16327605	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08		16327605	154787462	130	145704											
HIST1H3G	8355	broad.mit.edu	37	chr6	26271476	26271476	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatctcgcgcagagccacgGtgccgggacggtagcgatga	16	11	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26271476	T	T	26271476	3	4	181	1	0	0	0	0	1	0	0	0	7228	1261	44	3	277	3	HIST1H3G	6	26271476	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	9943871	26271476	144843591	131	145705											
CSNK2B	1460	broad.mit.edu	37	chr6	31639143	31639143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagatcagggctgctcCgggcatggggtacaagaaga	14	10	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31639143	A	A	31639143	1	1	181	0	1	0	0	0	0	0	0	0	3993	667	23	1		1	CSNK2B	6	31639143	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	5367667	31639143	139475924	132	145706											
SKIV2L	6499	broad.mit.edu	37	chr6	31931907	31931907	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccagctgccccaggtgcGtctgtgtgcgtctgtgtgcg	15	14	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31931907	A	A	31931907	1	1	181	0	1	0	0	0	0	0	0	0	14472	1160	40	4		4	SKIV2L	6	31931907	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	292764	31931907	139183160	133	145707											
TREML1	340205	broad.mit.edu	37	chr6	41117616	41117616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaggcaattcagcagccGgtccagagtcactgacgtgg	12	12	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41117616	T	T	41117616	3	4	181	1	0	0	0	0	1	0	0	0	16596	1116	39	1	275	1	TREML1	6	41117616	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	9185709	41117616	129997451	134	145708											
CLIC5	53405	broad.mit.edu	37	chr6	45870746	45870746	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgcctcaaggcagtgatAcagaggagtctatgaagctg	14	8	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45870746	T	T	45870746	1	4	181	0	1	0	0	0	0	0	0	0	3561	406	14	5		5	CLIC5	6	45870746	3'UTR	SNP	A	TCGA-55-6642-01A-11D-1855-08	4753130	45870746	125244321	135	145709											
BAI3	577	broad.mit.edu	37	chr6	69944889	69944889	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttaatttattaaaaacCaatttgtttcttttttgttt	2	3	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69944889	A	A	69944889	1	1	181	0	1	0	0	0	0	0	0	0	1305	609	21	2		2	BAI3	6	69944889	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	24074143	69944889	101170178	136	145710											
CD109	135228	broad.mit.edu	37	chr6	74497032	74497032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataaatgccacaggccacCagcagacccttctggttccc	7	15	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74497032	A	A	74497032	3	1	181	1	0	0	0	0	1	0	0	0	2993	595	21	2	2495	2	CD109	6	74497032	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	4552143	74497032	96618035	137	145711											
FILIP1	27145	broad.mit.edu	37	chr6	76023010	76023010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagaagatctttccacGggtttcttcaatcccacctg	7	12	3	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76023010	T	T	76023010	2	4	181	1	0	0	0	0	0	0	0	1	5951	1103	39	1		1	FILIP1	6	76023010	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	1525978	76023010	95092057	138	145712											
HTR1E	3354	broad.mit.edu	37	chr6	87725649	87725649	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccccttgactttgatactGattctctattaccggattta	5	10	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87725649	T	T	87725649	2	4	181	1	0	0	0	0	0	0	0	1	7509	1277	45	3		3	HTR1E	6	87725649	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	11702639	87725649	83389418	139	145713											
EPHA7	2045	broad.mit.edu	37	chr6	93956606	93956606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattttggcctttcagcaCgctccttttgccaacaatcc	5	14	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93956606	A	A	93956606	3	1	181	1	0	0	0	0	1	0	0	0	5214	536	19	3	378	3	EPHA7	6	93956606	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	6230957	93956606	77158461	140	145714											
HSF2	3298	broad.mit.edu	37	chr6	122733874	122733874	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatccttacttcaaacaaGgacaggatgacttgttggag	10	8	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122733874	T	T	122733874	4	4	181	1	0	0	0	0	0	1	0	0	7463	1001	35	2	305	2	HSF2	6	122733874	Nonsense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	28777268	122733874	48381193	141	145715											
TRDN	10345	broad.mit.edu	37	chr6	123698897	123698897	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgactttgctgtatcaaAaaggaaagaaaaaaaaatca	8	4	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123698897	G	G	123698897	1	3	181	0	1	0	0	0	0	0	0	0	16592	29	1	5		5	TRDN	6	123698897	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	965023	123698897	47416170	142	145716											
PTPRK	5796	broad.mit.edu	37	chr6	128306976	128306976	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccatggtcaggccagccCgtgaaatggaactgtttaac	10	11	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128306976	A	A	128306976	2	1	181	1	0	0	0	0	0	0	0	1	12913	639	23	1		1	PTPRK	6	128306976	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	4608079	128306976	42808091	143	145717											
PTPRK	5796	broad.mit.edu	37	chr6	128319960	128319960	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggctggatgcagctgtcCtgtctggtaaggggattccg	16	8	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128319960	A	A	128319960	4	1	181	1	0	0	0	0	0	1	0	0	12913	690	24	2	1820	2	PTPRK	6	128319960	Nonsense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	12984	128319960	42795107	144	145718											
TAAR8	83551	broad.mit.edu	37	chr6	132873815	132873815	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggacagaaatagcaaaCaacaaacagcagaaccatga	9	8	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132873815	A	A	132873815	1	1	181	0	1	0	0	0	0	0	0	0	15612	493	17	3		3	TAAR8	6	132873815	5'Flank	SNP	C	TCGA-55-6642-01A-11D-1855-08	4553855	132873815	38241252	145	145719											
C6orf118	168090	broad.mit.edu	37	chr6	165715464	165715464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcactggggaccagggccGtgtggatggtgaagtgggcc	18	10	1	1	rs150870882	byFrequency	TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165715464	T	T	165715464	3	4	181	1	0	0	0	0	1	0	0	0	2346	1145	40	3	1094	3	C6orf118	6	165715464	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	32841649	165715464	5399603	146	145720											
TNRC18	84629	broad.mit.edu	37	chr7	5352096	5352096	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagagagacacaaggcccCcggcccctcggccgtgcccg	13	18	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5352096	A	A	5352096	1	1	181	0	1	0	0	0	0	0	0	0	16462	638	22	2		2	TNRC18	7	5352096	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		5352096	153786567	147	145721											
HDAC9	9734	broad.mit.edu	37	chr7	19015590	19015590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcaggtatgaatccaacGtgcgggaataatccgggtca	12	9	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19015590	T	T	19015590	1	4	181	0	1	0	0	0	0	0	0	0	7081	1160	40	3		3	HDAC9	7	19015590	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	13663494	19015590	140123073	148	145722											
ABCB5	340273	broad.mit.edu	37	chr7	20768141	20768141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattccaacactttgagaggCtgaggcgggtggatcacttg	13	8	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20768141	A	A	20768141	1	1	181	0	1	0	0	0	0	0	0	0	44	812	28	3		3	ABCB5	7	20768141	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1752551	20768141	138370522	149	145723											
HOXA5	3202	broad.mit.edu	37	chr7	27182704	27182704	+	Frame_Shift_Del	DEL	G	-	-													gcgcatccaggggtagatctGgggttgggcgggcggcgccg							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27182704	-	-	27182704	7	5	181	1	0	1	0	1	0	0	0	0	7362	1357	47	0	297	0	HOXA5	7	27182704	Frame_Shift_Del	DEL	G	TCGA-55-6642-01A-11D-1855-08	6414563	27182704	131955959	150	145724											
MRPL32	64983	broad.mit.edu	37	chr7	42977157	42977157	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagacagaaagcgaccatcCtggttcacccagaattgaca	9	12	1	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42977157	A	A	42977157	2	1	181	1	0	0	0	0	0	0	0	1	9889	668	24	2		2	MRPL32	7	42977157	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	15794453	42977157	116161506	151	145725											
ZMIZ2	83637	broad.mit.edu	37	chr7	44797364	44797364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagggtatggtgcccacatGggtgggtgggcgggttttat	18	5	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44797364	T	T	44797364	1	4	181	0	1	0	0	0	0	0	0	0	17823	1363	47	2		2	ZMIZ2	7	44797364	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1820207	44797364	114341299	152	145726											
SUMF2	25870	broad.mit.edu	37	chr7	56144542	56144542	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggtcaagtttacccatGggggaactggttccagccaa	12	11	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56144542	T	T	56144542	3	4	181	1	0	0	0	0	1	0	0	0	15504	1357	47	2	630	2	SUMF2	7	56144542	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	11347178	56144542	102994121	153	145727											
ZNF679	168417	broad.mit.edu	37	chr7	63720641	63720641	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagtcatagaattctctctgGaggagtggcaatgcctggat	12	7	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63720641	T	T	63720641	4	4	181	1	0	0	0	0	0	1	0	0	18213	1175	41	3	88	3	ZNF679	7	63720641	Nonsense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	7576099	63720641	95418022	154	145728											
WBSCR17	64409	broad.mit.edu	37	chr7	70800744	70800744	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctggttcagtcatttgcGgagcttgatgggtcgtcaga	14	7	4	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70800744	A	A	70800744	1	1	181	0	1	0	0	0	0	0	0	0	17391	1131	39	4		4	WBSCR17	7	70800744	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	7080103	70800744	88337919	155	145729											
SEMA3D	223117	broad.mit.edu	37	chr7	84658272	84658272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgatgcagctgtccagGcagccgtcctatctagagac	10	12	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84658272	T	T	84658272	1	4	181	0	1	0	0	0	0	0	0	0	14140	1218	42	3		3	SEMA3D	7	84658272	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	13857528	84658272	74480391	156	145730											
SEMA3D	223117	broad.mit.edu	37	chr7	84727060	84727060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaagcaaaacaaaacGggagaagaagagagatgaaa	10	4	0	5			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84727060	T	T	84727060	1	4	181	0	1	0	0	0	0	0	0	0	14140	1131	39	1		1	SEMA3D	7	84727060	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	68788	84727060	74411603	157	145731											
GAL3ST4	79690	broad.mit.edu	37	chr7	99758491	99758491	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcggaaggctgatgaggtgGatttatagtaggagaaggca	17	3	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99758491	A	A	99758491	3	1	181	1	0	0	0	0	1	0	0	0	6262	1174	41	4	943	4	GAL3ST4	7	99758491	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	15031431	99758491	59380172	158	145732											
PMPCB	9512	broad.mit.edu	37	chr7	102950943	102950943	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaaaaatagctttaagTaatttaaattttgcctttaa	6	3	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102950943	A	A	102950943	1	1	181	0	1	0	0	0	0	0	0	0	12236	1653	57	5		5	PMPCB	7	102950943	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	3192452	102950943	56187720	159	145733											
LRRN3	54674	broad.mit.edu	37	chr7	110764827	110764827	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctatgtgaggaattacttaCagaaaccaacctttgcatta	7	8	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110764827	G	G	110764827	3	3	181	1	0	0	0	0	1	0	0	0	9123	479	17	4	2001	4	LRRN3	7	110764827	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	7813884	110764827	48373836	160	145734											
DOCK4	9732	broad.mit.edu	37	chr7	111484882	111484882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtcggctggtgatctcCaatatggtcctcagcagaat	12	9	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111484882	A	A	111484882	3	1	181	1	0	0	0	0	1	0	0	0	4729	593	21	2	3339	2	DOCK4	7	111484882	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	720055	111484882	47653781	161	145735											
CFTR	1080	broad.mit.edu	37	chr7	117144250	117144250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgaatagtatcagattcCaaatctgtatggagaccaaa	8	6	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117144250	A	A	117144250	1	1	181	0	1	0	0	0	0	0	0	0	3324	609	21	2		2	CFTR	7	117144250	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	5659368	117144250	41994413	162	145736											
MKLN1	4289	broad.mit.edu	37	chr7	131149249	131149249	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatctttgattgttttaaAttggatttgagtaaaaagtt	7	1	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131149249	G	G	131149249	1	3	181	0	1	0	0	0	0	0	0	0	9696	116	4	5		5	MKLN1	7	131149249	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	14004999	131149249	27989414	163	145737											
PLXNA4	91584	broad.mit.edu	37	chr7	131859563	131859563	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcccggaggacagggtggtCttcaattcctgggaacagca	14	10	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131859563	A	A	131859563	3	1	181	1	0	0	0	0	1	0	0	0	12217	913	32	3	1741	3	PLXNA4	7	131859563	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	710314	131859563	27279100	164	145738											
AKR1B15	441282	broad.mit.edu	37	chr7	134260378	134260378	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgttcaatgctatgccctGagtcttatctcaggggtcag	10	9	4	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134260378	T	T	134260378	1	4	181	0	1	0	0	0	0	0	0	0	468	1305	45	3		3	AKR1B15	7	134260378	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2400815	134260378	24878285	165	145739											
KIAA1549	57670	broad.mit.edu	37	chr7	138601584	138601584	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgtgtcgactgttgcttCgagagtgaaggcagtcacgg	16	7	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138601584	A	A	138601584	4	1	181	1	0	0	0	0	0	1	0	0	8314	893	31	3	3140	3	KIAA1549	7	138601584	Nonsense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	4341206	138601584	20537079	166	145740											
NOBOX	135935	broad.mit.edu	37	chr7	144101846	144101846	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattctctgagaatggaaggGactttcttgggggagatctc	13	6	3	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144101846	T	T	144101846	1	4	181	0	1	0	0	0	0	0	0	0	10607	1189	41	3		3	NOBOX	7	144101846	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	5500262	144101846	15036817	167	145741											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092604	147092604	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggattaaagaaacagtagttGgatgtgatggctgtggccag	15	4	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147092604	C	C	147092604	1	2	181	0	1	0	0	0	0	0	0	0	3679	1363	47	4		4	CNTNAP2	7	147092604	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2990758	147092604	12046059	168	145742											
CNTNAP2	26047	broad.mit.edu	37	chr7	147182905	147182905	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttaaactaacaaggatTaattgccttggtaaggcaac	8	8	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147182905	G	G	147182905	1	3	181	0	1	0	0	0	0	0	0	0	3679	1769	61	5		5	CNTNAP2	7	147182905	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	90301	147182905	11955758	169	145743											
SSPO	23145	broad.mit.edu	37	chr7	149503133	149503133	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccagggactgcaacacGcagccctgcacaggtaccag	11	15	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149503133	T	T	149503133	2	4	181	1	0	0	0	0	0	0	0	1	15307	1074	38	3		3	SSPO	7	149503133	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	2320228	149503133	9635530	170	145744											
PSD3	23362	broad.mit.edu	37	chr8	18870971	18870971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaaacccaggtggccccGggatcctgggggacagagcg	16	13	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18870971	T	T	18870971	1	4	181	0	1	0	0	0	0	0	0	0	12754	1131	39	1		1	PSD3	8	18870971	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08		18870971	127493051	171	145745											
POLR3D	661	broad.mit.edu	37	chr8	22105494	22105494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactccatctttgagcagGgcccagctgaaatgatgaag	10	11	2	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22105494	T	T	22105494	3	4	181	1	0	0	0	0	1	0	0	0	12326	1232	43	2	344	2	POLR3D	8	22105494	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	3234523	22105494	124258528	172	145746											
POTEA	340441	broad.mit.edu	37	chr8	43171053	43171053	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacaagacttaaagctgacAtcagaggaagagccacaaag	10	8	1	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43171053	T	T	43171053	2	4	181	1	0	0	0	0	0	0	0	1	12356	204	8	5		5	POTEA	8	43171053	Silent	SNP	A	TCGA-55-6642-01A-11D-1855-08	21065559	43171053	103192969	173	145747											
PTDSS1	9791	broad.mit.edu	37	chr8	97299455	97299455	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatagacttgacattttaaAttgttccttctctgtatttc	4	7	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97299455	G	G	97299455	1	3	181	0	1	0	0	0	0	0	0	0	12842	116	4	5		5	PTDSS1	8	97299455	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	54128402	97299455	49064567	174	145748											
SPAG1	6674	broad.mit.edu	37	chr8	101199499	101199499	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaaaaaatattatagaattCttttacatttacagcaggat	5	4	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101199499	A	A	101199499	1	1	181	0	1	0	0	0	0	0	0	0	15091	928	32	3		3	SPAG1	8	101199499	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	3900044	101199499	45164523	175	145749											
RIMS2	9699	broad.mit.edu	37	chr8	104672481	104672481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaccagggaggcagcccGtggtgaggctgcttgccgtg	16	12	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104672481	T	T	104672481	1	4	181	0	1	0	0	0	0	0	0	0	13479	1160	40	3		3	RIMS2	8	104672481	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	3472982	104672481	41691541	176	145750											
CSMD3	114788	broad.mit.edu	37	chr8	113293367	113293367	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactcatcaatactttcataTaattactgatttttaaatat	1	6	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113293367	G	G	113293367	1	3	181	0	1	0	0	0	0	0	0	0	3980	1421	49	5		5	CSMD3	8	113293367	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	8620886	113293367	33070655	177	145751											
EIF3H	8667	broad.mit.edu	37	chr8	117768114	117768114	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcgcgtgacgtcactcgcAggccggcgttcgaggggcgg	17	13	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117768114	T	T	117768114	1	4	181	0	1	0	0	0	0	0	0	0	5060	203	7	5		5	EIF3H	8	117768114	5'Flank	SNP	A	TCGA-55-6642-01A-11D-1855-08	4474747	117768114	28595908	178	145752											
TNFRSF11B	4982	broad.mit.edu	37	chr8	119945315	119945315	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgcagctccttgcacacGgggctgcagtatagacactc	10	13	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119945315	T	T	119945315	2	4	181	1	0	0	0	0	0	0	0	1	16408	1103	39	1		1	TNFRSF11B	8	119945315	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	2177201	119945315	26418707	179	145753											
FAM91A1	157769	broad.mit.edu	37	chr8	124792852	124792852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagcattgcatatcatccGttctaggatcttagatgtta	7	8	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792852	T	T	124792852	1	4	181	0	1	0	0	0	0	0	0	0	5708	1160	40	3		3	FAM91A1	8	124792852	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	4847537	124792852	21571170	180	145754											
CPSF1	29894	broad.mit.edu	37	chr8	145624759	145624759	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcggcaccgacttaccCgcagctgcacacagagagcc	10	17	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145624759	A	A	145624759	2	1	181	1	0	0	0	0	0	0	0	1	3856	639	23	1		1	CPSF1	8	145624759	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	20831907	145624759	739263	181	145755											
VPS28	51160	broad.mit.edu	37	chr8	145649184	145649184	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcaagggctagtgccccGggctcaggcatgcaggaagc	16	11	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145649184	T	T	145649184	1	4	181	0	1	0	0	0	0	0	0	0	17326	1131	39	1		1	VPS28	8	145649184	3'UTR	SNP	G	TCGA-55-6642-01A-11D-1855-08	24425	145649184	714838	182	145756											
C9orf100	84904	broad.mit.edu	37	chr9	35662335	35662335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaagcccttgctgtttcCatggagctaattcagggatg	12	9	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35662335	A	A	35662335	1	1	181	0	1	0	0	0	0	0	0	0	2470	609	21	2		2	C9orf100	9	35662335	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		35662335	105551096	183	145757											
MELK	9833	broad.mit.edu	37	chr9	36665313	36665313	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaattgacttttcttcttCagtgtgctttatctagtaac	6	7	4	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36665313	T	T	36665313	1	4	181	0	1	0	0	0	0	0	0	0	9563	841	29	4		4	MELK	9	36665313	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1002978	36665313	104548118	184	145758											
FLJ46321	389763	broad.mit.edu	37	chr9	84607546	84607546	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcctcagagcaaaatttcaGagctatctgtgtcagagaga	10	8	4	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84607546	T	T	84607546	4	4	181	1	0	0	0	0	0	1	0	0	5990	943	33	3	2175	3	FLJ46321	9	84607546	Nonsense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	47942233	84607546	56605885	185	145759											
FLJ46321	389763	broad.mit.edu	37	chr9	84608659	84608659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagacagacttttctgcccCcgccacacagcatcgtagac	8	16	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84608659	A	A	84608659	3	1	181	1	0	0	0	0	1	0	0	0	5990	623	22	2	3288	2	FLJ46321	9	84608659	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	1113	84608659	56604772	186	145760											
ZNF462	58499	broad.mit.edu	37	chr9	109701363	109701363	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcccaaaaagctaccccGgctgaagaagtggaagactc	9	13	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109701363	T	T	109701363	2	4	181	1	0	0	0	0	0	0	0	1	18053	1103	39	1		1	ZNF462	9	109701363	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	25092704	109701363	31512068	187	145761											
SVEP1	79987	broad.mit.edu	37	chr9	113197464	113197464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaactgtcttcttttgctAgacagtcccagggtggtcaa	10	10	3	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113197464	G	G	113197464	1	3	181	0	1	0	0	0	0	0	0	0	15538	435	15	5		5	SVEP1	9	113197464	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	3496101	113197464	28015967	188	145762											
ODF2	4957	broad.mit.edu	37	chr9	131231471	131231471	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctacatcagaatccacctCattgcctggagatcacgcca	6	15	4	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131231471	T	T	131231471	3	4	181	1	0	0	0	0	1	0	0	0	10922	826	29	4	328	4	ODF2	9	131231471	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	18034007	131231471	9981960	189	145763											
SPTAN1	6709	broad.mit.edu	37	chr9	131388918	131388918	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccctacacctggtttacCatggaggccctggaggagac	11	13	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131388918	A	A	131388918	2	1	181	1	0	0	0	0	0	0	0	1	15235	581	21	2		2	SPTAN1	9	131388918	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	157447	131388918	9824513	190	145764											
ADAMTS13	11093	broad.mit.edu	37	chr9	136323143	136323143	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattaatgtggctccgcacgCacggattgccatccatgccc	9	15	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136323143	G	G	136323143	3	3	181	1	0	0	0	0	1	0	0	0	258	710	25	4	4114	4	ADAMTS13	9	136323143	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	4934225	136323143	4890288	191	145765											
CAMSAP1	157922	broad.mit.edu	37	chr9	138713008	138713008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcatggagcctgtaactgtCgaagagacacttcccatgtg	10	10	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138713008	A	A	138713008	3	1	181	1	0	0	0	0	1	0	0	0	2637	884	31	3	1337	3	CAMSAP1	9	138713008	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	2389865	138713008	2500423	192	145766											
MAN1B1	11253	broad.mit.edu	37	chr9	139995664	139995664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgcattcaagcagttacccCtttagtggacttgtggggac	11	10	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139995664	T	T	139995664	1	4	181	0	1	0	0	0	0	0	0	0	9304	696	24	4		4	MAN1B1	9	139995664	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1282656	139995664	1217767	193	145767											
AKR1C2	1646	broad.mit.edu	37	chr10	5041582	5041582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggtaggtgatgcagcgCtccagagagtggtatgtaca	15	6	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5041582	A	A	5041582	1	1	181	0	1	0	0	0	0	0	0	0	470	812	28	3		3	AKR1C2	10	5041582	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		5041582	130493165	194	145768											
CUBN	8029	broad.mit.edu	37	chr10	17157535	17157535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcgtgccacagaaccccCttcacagtcgtcatatttgg	8	14	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17157535	A	A	17157535	3	1	181	1	0	0	0	0	1	0	0	0	4084	681	24	2	10460	2	CUBN	10	17157535	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	12115953	17157535	118377212	195	145769											
C10orf114	399726	broad.mit.edu	37	chr10	21784774	21784774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggctgcggaggcgcccgGcacctgcagggggcgctgct	19	14	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21784774	T	T	21784774	3	4	181	1	0	0	0	0	1	0	0	0	1596	1203	42	3	248	3	C10orf114	10	21784774	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	4627239	21784774	113749973	196	145770											
ARMC4	55130	broad.mit.edu	37	chr10	28233185	28233185	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgtgctgcctcaccaccCgccgtgctcttttaaacttg	7	18	2	0	rs140569195	byFrequency	TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28233185	T	T	28233185	3	4	181	1	0	0	0	0	1	0	0	0	957	652	23	4	1461	4	ARMC4	10	28233185	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	6448411	28233185	107301562	197	145771											
C10orf68	79741	broad.mit.edu	37	chr10	33135102	33135102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtctaatatttgtgacCtatttatgttccctgagtta	7	6	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33135102	A	A	33135102	1	1	181	0	1	0	0	0	0	0	0	0	1624	696	24	2		2	C10orf68	10	33135102	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	4901917	33135102	102399645	198	145772											
OIT3	170392	broad.mit.edu	37	chr10	74658810	74658810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtcgtgagtaccttccCtgtgctctttttctccacca	8	13	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74658810	A	A	74658810	1	1	181	0	1	0	0	0	0	0	0	0	10944	696	24	2		2	OIT3	10	74658810	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	41523708	74658810	60875937	199	145773											
MYOZ1	58529	broad.mit.edu	37	chr10	75397403	75397403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaatttataaattttcaGggaggggatgttgactgcat	10	4	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75397403	T	T	75397403	1	4	181	0	1	0	0	0	0	0	0	0	10189	1015	35	2		2	MYOZ1	10	75397403	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	738593	75397403	60137344	200	145774											
MYST4	23522	broad.mit.edu	37	chr10	76790413	76790413	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccatcagtcacaaatctAtgggcgctcccagactgtag	8	14	3	1	rs143966521		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76790413	G	G	76790413	3	3	181	1	0	0	0	0	1	0	0	0	10199	449	16	5	5893	5	MYST4	10	76790413	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	1393010	76790413	58744334	201	145775											
POLR3A	11128	broad.mit.edu	37	chr10	79745855	79745855	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtgccgttatcattgatGccatatttatctctggtttt	8	7	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79745855	A	A	79745855	2	1	181	1	0	0	0	0	0	0	0	1	12323	1306	46	4		4	POLR3A	10	79745855	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	2955442	79745855	55788892	202	145776											
GRID1	2894	broad.mit.edu	37	chr10	87373089	87373089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatactaactagaaacaacCtgccctcccaatggcccagt	5	14	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87373089	A	A	87373089	1	1	181	0	1	0	0	0	0	0	0	0	6837	696	24	2		2	GRID1	10	87373089	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	7627234	87373089	48161658	203	145777											
PTEN	5728	broad.mit.edu	37	chr10	89653755	89653755	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgctgcatatttcagatAtttctttccttaactaaagt	5	7	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89653755	G	G	89653755	1	3	181	0	1	0	0	0	0	0	0	0	12844	464	16	5		5	PTEN	10	89653755	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	2280666	89653755	45880992	204	145778											
LIPA	3988	broad.mit.edu	37	chr10	90975661	90975661	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttcttgatgagttttcaGggccccctttaatgaaaaga	9	8	2	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90975661	T	T	90975661	1	4	181	0	1	0	0	0	0	0	0	0	8892	1015	35	2		2	LIPA	10	90975661	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1321906	90975661	44559086	205	145779											
HECTD2	143279	broad.mit.edu	37	chr10	93237943	93237943	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctaattaccttactgttTtcttttgcctacagcctcaa	3	12	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93237943	C	C	93237943	1	2	181	0	1	0	0	0	0	0	0	0	7107	1856	64	5		5	HECTD2	10	93237943	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	2262282	93237943	42296804	206	145780											
SLIT1	6585	broad.mit.edu	37	chr10	98807426	98807426	+	Intron	DEL	G	-	-													gttagggacaggggagggctGggggggccagggaccctcac							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98807426	-	-	98807426	6	5	181	0	1	1	0	1	0	0	0	0	14853	1363	47	0		0	SLIT1	10	98807426	Intron	DEL	G	TCGA-55-6642-01A-11D-1855-08	5569483	98807426	36727321	207	145781											
PKD2L1	9033	broad.mit.edu	37	chr10	102057200	102057200	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagtcgatgaacaccactcGagtgcccctgtccagccaca	9	15	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102057200	A	A	102057200	4	1	181	1	0	0	0	0	0	1	0	0	12062	1066	37	4	1570	4	PKD2L1	10	102057200	Nonsense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	3249774	102057200	33477547	208	145782											
DCLRE1A	9937	broad.mit.edu	37	chr10	115609681	115609681	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccagatcataaggcaaagTactctcattattttgagaaa	7	7	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115609681	C	C	115609681	3	2	181	1	0	0	0	0	1	0	0	0	4327	1638	57	5	1971	5	DCLRE1A	10	115609681	Missense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	13552481	115609681	19925066	209	145783											
TDRD1	56165	broad.mit.edu	37	chr10	115963715	115963715	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attaagttggcttattaattGagtgcctcagaacaggagcc	10	7	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115963715	T	T	115963715	1	4	181	0	1	0	0	0	0	0	0	0	15852	1305	45	3		3	TDRD1	10	115963715	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	354034	115963715	19571032	210	145784											
HTRA1	5654	broad.mit.edu	37	chr10	124273857	124273857	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgatcacagtgattccCgaagaaattgacccataggc	8	10	2	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124273857	A	A	124273857	2	1	181	1	0	0	0	0	0	0	0	1	7523	639	23	1		1	HTRA1	10	124273857	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	8310142	124273857	11260890	211	145785											
JAKMIP3	282973	broad.mit.edu	37	chr10	133949406	133949406	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttctccgtcacttaaagAacaatcacatagtgcgttgt	8	9	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133949406	G	G	133949406	1	3	181	0	1	0	0	0	0	0	0	0	8012	261	9	5		5	JAKMIP3	10	133949406	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	9675549	133949406	1585341	212	145786											
STK32C	282974	broad.mit.edu	37	chr10	134038741	134038741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcagggggtccatacccatCctcgcagcagctcataggcc	11	15	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134038741	A	A	134038741	3	1	181	1	0	0	0	0	1	0	0	0	15417	855	30	3	612	3	STK32C	10	134038741	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	89335	134038741	1496006	213	145787											
NLRP6	171389	broad.mit.edu	37	chr11	280512	280512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaccagtgccccgacCgcggcgcgccggtgccgcag	15	18	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	280512	A	A	280512	3	1	181	1	0	0	0	0	1	0	0	0	10576	652	23	1	792	1	NLRP6	11	280512	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08		280512	134726004	214	145788											
B4GALNT4	338707	broad.mit.edu	37	chr11	373817	373817	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaccgcggctcggaccacGtggaagtgggcgtgagtgcc	17	12	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	373817	T	T	373817	3	4	181	1	0	0	0	0	1	0	0	0	1274	1145	40	3	802	3	B4GALNT4	11	373817	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	93305	373817	134632699	215	145789											
OR51E2	81285	broad.mit.edu	37	chr11	4703444	4703444	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggacattggagtggcagaaGgccagccgcttgatcagcag	15	9	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4703444	C	C	4703444	2	2	181	1	0	0	0	0	0	0	0	1	11189	987	35	4		4	OR51E2	11	4703444	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	4329627	4703444	130303072	216	145790											
OR51B5	282763	broad.mit.edu	37	chr11	5363838	5363838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttccaattctatgggtaGtaaaaaggtgaagaatggca	12	4	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5363838	T	T	5363838	3	4	181	1	0	0	0	0	1	0	0	0	11185	1029	36	3	25	3	OR51B5	11	5363838	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	660394	5363838	129642678	217	145791											
CCKBR	887	broad.mit.edu	37	chr11	6292297	6292297	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcgcggttggcgaagacAgcgatggctgctacgtgcaa	16	10	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6292297	T	T	6292297	3	4	181	1	0	0	0	0	1	0	0	0	2909	188	7	5	886	5	CCKBR	11	6292297	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	928459	6292297	128714219	218	145792											
OR10A3	26496	broad.mit.edu	37	chr11	7960402	7960402	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcttcaggatggcaaaCagaactcgaatgtaagacaa	10	8	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7960402	A	A	7960402	2	1	181	1	0	0	0	0	0	0	0	1	10985	465	17	3		3	OR10A3	11	7960402	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	1668105	7960402	127046114	219	145793											
NLRP10	338322	broad.mit.edu	37	chr11	7981827	7981827	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttactactcaggaaagcGgcaagcctggggccatctaa	11	11	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7981827	T	T	7981827	2	4	181	1	0	0	0	0	0	0	0	1	10567	1103	39	1		1	NLRP10	11	7981827	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	21425	7981827	127024689	220	145794											
MADD	8567	broad.mit.edu	37	chr11	47312206	47312206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagaaagtgtaaatacccCagttggcaaggatcctggcc	10	10	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47312206	A	A	47312206	3	1	181	1	0	0	0	0	1	0	0	0	9240	594	21	2	3274	2	MADD	11	47312206	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	39330379	47312206	87694310	221	145795											
MYBPC3	4607	broad.mit.edu	37	chr11	47368227	47368227	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggggtgggagaaagggtAggtggcacatgagaggtatg	22	2	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47368227	G	G	47368227	1	3	181	0	1	0	0	0	0	0	0	0	10107	435	15	5		5	MYBPC3	11	47368227	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	56021	47368227	87638289	222	145796											
OR4C46	119749	broad.mit.edu	37	chr11	51515433	51515433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaccatcactgccagccCatcactggggtcccccatgt	9	17	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515433	A	A	51515433	3	1	181	1	0	0	0	0	1	0	0	0	11145	594	21	2	154	2	OR4C46	11	51515433	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	4147206	51515433	83491083	223	145797											
MS4A6A	64231	broad.mit.edu	37	chr11	59949055	59949055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttctgaattagatttaccCcaataactttgatttctgcg	6	9	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59949055	A	A	59949055	3	1	181	1	0	0	0	0	1	0	0	0	9958	637	22	2	651	2	MS4A6A	11	59949055	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	8433622	59949055	75057461	224	145798											
EEF1G	1937	broad.mit.edu	37	chr11	62341372	62341372	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgcaaagtaagccgccCgggagagaagggagggggaa	18	9	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62341372	A	A	62341372	1	1	181	0	1	0	0	0	0	0	0	0	4968	667	23	1		1	EEF1G	11	62341372	5'UTR	SNP	C	TCGA-55-6642-01A-11D-1855-08	2392317	62341372	72665144	225	145799											
MARK2	2011	broad.mit.edu	37	chr11	63668538	63668538	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgggctacaagagctcCgaggtgtgtgctccccgccc	12	16	0	1	rs139426318		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63668538	A	A	63668538	2	1	181	1	0	0	0	0	0	0	0	1	9405	639	23	1		1	MARK2	11	63668538	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	1327166	63668538	71337978	226	145800											
MAP3K11	4296	broad.mit.edu	37	chr11	65374992	65374992	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagtagttcctgcgccCgagacagcgatggtggagag	16	10	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65374992	A	A	65374992	1	1	181	0	1	0	0	0	0	0	0	0	9337	667	23	1		1	MAP3K11	11	65374992	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1706454	65374992	69631524	227	145801											
PITPNM1	9600	broad.mit.edu	37	chr11	67262526	67262526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtcccattctcatctccCattccatattcccaggccca	3	20	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67262526	A	A	67262526	1	1	181	0	1	0	0	0	0	0	0	0	12045	609	21	2		2	PITPNM1	11	67262526	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1887534	67262526	67743990	228	145802											
LRP5	4041	broad.mit.edu	37	chr11	68191071	68191071	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgcgaggccaccaataccAtcaacgtccacaggctgagc	10	15	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68191071	G	G	68191071	3	3	181	1	0	0	0	0	1	0	0	0	9047	217	8	5	3196	5	LRP5	11	68191071	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	928545	68191071	66815445	229	145803											
FGF4	2249	broad.mit.edu	37	chr11	69588097	69588097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagcctggggaggaagtGggtgaccttcatggtgggcg	18	8	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69588097	T	T	69588097	3	4	181	1	0	0	0	0	1	0	0	0	5911	1348	47	2	23	2	FGF4	11	69588097	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1397026	69588097	65418419	230	145804											
PGM2L1	283209	broad.mit.edu	37	chr11	74056736	74056736	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtcaagacctttcttctCattaaaacttcttgactcca	3	11	4	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74056736	A	A	74056736	1	1	181	0	1	0	0	0	0	0	0	0	11894	841	29	3		3	PGM2L1	11	74056736	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	4468639	74056736	60949780	231	145805											
PAK1	5058	broad.mit.edu	37	chr11	77103409	77103409	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatggatcggtaaaatcGgtccttctttttcttctcct	6	9	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77103409	T	T	77103409	2	4	181	1	0	0	0	0	0	0	0	1	11493	1124	39	1		1	PAK1	11	77103409	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	3046673	77103409	57903107	232	145806											
ODZ4	26011	broad.mit.edu	37	chr11	78433921	78433921	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccaatgacaggaggctgctGagacacaaactggttctccc	10	13	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78433921	A	A	78433921	4	1	181	1	0	0	0	0	0	1	0	0	10932	1299	45	4	4761	4	ODZ4	11	78433921	Nonsense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1330512	78433921	56572595	233	145807											
DLG2	1740	broad.mit.edu	37	chr11	83183754	83183754	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaaattaggaatgaaagcGtgctgggaaacttactttcc	10	7	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83183754	C	C	83183754	1	2	181	0	1	0	0	0	0	0	0	0	4595	1160	40	4		4	DLG2	11	83183754	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	4749833	83183754	51822762	234	145808											
ACAT1	38	broad.mit.edu	37	chr11	108004505	108004505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttaatgaaatacgatttGggtaaaatacctataatttt	5	3	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108004505	T	T	108004505	1	4	181	0	1	0	0	0	0	0	0	0	121	1363	47	2		2	ACAT1	11	108004505	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	24820751	108004505	27002011	235	145809											
ATM	472	broad.mit.edu	37	chr11	108123623	108123623	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctgcaatgaattttttcCaaagcgtgccagaatggtat	9	7	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108123623	T	T	108123623	4	4	181	1	0	0	0	0	0	1	0	0	1113	595	21	4	1924	4	ATM	11	108123623	Nonsense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	119118	108123623	26882893	236	145810											
ATM	472	broad.mit.edu	37	chr11	108205768	108205768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatttcgcttagcaggaGgtgtaaatttaccaaaaata	8	6	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108205768	T	T	108205768	3	4	181	1	0	0	0	0	1	0	0	0	1113	1000	35	2	8297	2	ATM	11	108205768	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	82145	108205768	26800748	237	145811											
ZC3H12C	85463	broad.mit.edu	37	chr11	110035384	110035384	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttccttagttagcatccCagctacttctactgcaaaac	4	14	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110035384	T	T	110035384	3	4	181	1	0	0	0	0	1	0	0	0	17689	594	21	4	1596	4	ZC3H12C	11	110035384	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	1829616	110035384	24971132	238	145812											
LRTM2	654429	broad.mit.edu	37	chr12	1943635	1943635	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggggctgagccggagccGgagcccagcacagcctgccc	15	18	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1943635	A	A	1943635	2	1	181	1	0	0	0	0	0	0	0	1	9132	1103	39	4		4	LRTM2	12	1943635	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08		1943635	131908260	239	145813											
ITFG2	55846	broad.mit.edu	37	chr12	2932973	2932973	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggccgcaacagcccctgCctcgtatatgtcactttcaa	9	14	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2932973	T	T	2932973	2	4	181	1	0	0	0	0	0	0	0	1	7940	747	26	4		4	ITFG2	12	2932973	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	989338	2932973	130918922	240	145814											
NOP2	4839	broad.mit.edu	37	chr12	6669427	6669427	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggccaaagtctaggccCgtgggcaccagtcgcacatt	11	14	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6669427	A	A	6669427	2	1	181	1	0	0	0	0	0	0	0	1	10633	639	23	1		1	NOP2	12	6669427	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	3736454	6669427	127182468	241	145815											
CD163L1	283316	broad.mit.edu	37	chr12	7548699	7548699	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggtatcttaccagaacagAtcactccaacatcttcactg	6	12	4	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7548699	G	G	7548699	3	3	181	1	0	0	0	0	1	0	0	0	2998	333	12	5	2367	5	CD163L1	12	7548699	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	879272	7548699	126303196	242	145816											
C12orf59	120939	broad.mit.edu	37	chr12	10342365	10342365	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatattcataaaatttggGgcaaggagtgacaatgagtt	12	3	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10342365	T	T	10342365	1	4	181	0	1	0	0	0	0	0	0	0	1715	1247	43	2		2	C12orf59	12	10342365	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2793666	10342365	123509530	243	145817											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	181	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	15055919	25398284	108453611	244	145818											
C12orf35	55196	broad.mit.edu	37	chr12	32135902	32135902	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagtagctgttccatggaAgtgctagcaacctgtctttc	10	10	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32135902	G	G	32135902	2	3	181	1	0	0	0	0	0	0	0	1	1695	69	3	5		5	C12orf35	12	32135902	Silent	SNP	A	TCGA-55-6642-01A-11D-1855-08	6737618	32135902	101715993	245	145819											
NCKAP5L	57701	broad.mit.edu	37	chr12	50197857	50197857	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacaaggaagagaagcccCggcaggctactccagggaat	14	10	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50197857	A	A	50197857	1	1	181	0	1	0	0	0	0	0	0	0	10319	667	23	1		1	NCKAP5L	12	50197857	5'UTR	SNP	C	TCGA-55-6642-01A-11D-1855-08	18061955	50197857	83654038	246	145820											
RACGAP1	29127	broad.mit.edu	37	chr12	50395105	50395105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagaagataaaattattcCatcaaacaacttggatacag	5	8	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50395105	A	A	50395105	1	1	181	0	1	0	0	0	0	0	0	0	13085	609	21	2		2	RACGAP1	12	50395105	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	197248	50395105	83456790	247	145821											
KRT78	196374	broad.mit.edu	37	chr12	53238053	53238053	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagaggactgccacctttGaccatctcctcatgtttgaa	8	11	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53238053	T	T	53238053	1	4	181	0	1	0	0	0	0	0	0	0	8562	1305	45	3		3	KRT78	12	53238053	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2842948	53238053	80613842	248	145822											
COPZ1	22818	broad.mit.edu	37	chr12	54741587	54741587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagcactgctggagaacatGgaggggctgttcttggctgt	16	8	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54741587	T	T	54741587	3	4	181	1	0	0	0	0	1	0	0	0	3773	1348	47	2	376	2	COPZ1	12	54741587	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1503534	54741587	79110308	249	145823											
RBMS2	5939	broad.mit.edu	37	chr12	56975178	56975178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatctgccttctctctcGgcagccccatccgatccctt	6	20	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56975178	T	T	56975178	1	4	181	0	1	0	0	0	0	0	0	0	13257	1131	39	1		1	RBMS2	12	56975178	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2233591	56975178	76876717	250	145824											
CCDC41	51134	broad.mit.edu	37	chr12	94806266	94806266	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaatgtgctgacaaccaTgtaaaaataagttttggctt	9	5	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94806266	C	C	94806266	3	2	181	1	0	0	0	0	1	0	0	0	2840	1464	51	5	2164	5	CCDC41	12	94806266	Missense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	37831088	94806266	39045629	251	145825											
SLC25A3	5250	broad.mit.edu	37	chr12	98993345	98993345	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttggcctaaacatttactAttaacttttagggagggctt	9	6	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98993345	T	T	98993345	1	4	181	0	1	0	0	0	0	0	0	0	14607	464	16	5		5	SLC25A3	12	98993345	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	4187079	98993345	34858550	252	145826											
CRY1	1407	broad.mit.edu	37	chr12	107391114	107391114	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatattttctgcagaatatcCcatgaagcctccattcccat	5	12	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107391114	T	T	107391114	3	4	181	1	0	0	0	0	1	0	0	0	3935	632	22	4	229	4	CRY1	12	107391114	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	8397769	107391114	26460781	253	145827											
SELPLG	6404	broad.mit.edu	37	chr12	109017390	109017390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctggtgcagtggtctGtgcctccatggctgtggttt	15	9	2	0	rs113452057		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109017390	T	T	109017390	3	4	181	1	0	0	0	0	1	0	0	0	14133	1386	48	3	548	3	SELPLG	12	109017390	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1626276	109017390	24834505	254	145828											
FOXN4	121643	broad.mit.edu	37	chr12	109719546	109719546	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgggggcctctggttccccCggtttgccggggcgccggca	17	15	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109719546	T	T	109719546	2	4	181	1	0	0	0	0	0	0	0	1	6082	639	23	4		4	FOXN4	12	109719546	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	702156	109719546	24132349	255	145829											
TPCN1	53373	broad.mit.edu	37	chr12	113723792	113723792	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacagcatgtttctgaccCaaagctgagactcttgagga	11	9	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113723792	A	A	113723792	1	1	181	0	1	0	0	0	0	0	0	0	16519	609	21	2		2	TPCN1	12	113723792	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	4004246	113723792	20128103	256	145830											
GCN1L1	10985	broad.mit.edu	37	chr12	120593523	120593523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtggagttccatcagccCctggaaggggtgggattgga	16	8	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120593523	A	A	120593523	3	1	181	1	0	0	0	0	1	0	0	0	6361	637	22	2	4822	2	GCN1L1	12	120593523	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	6869731	120593523	13258372	257	145831											
ARL6IP4	51329	broad.mit.edu	37	chr12	123466489	123466489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggcctggccaccacctcCgtcttcccttccagtcctga	7	19	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123466489	A	A	123466489	1	1	181	0	1	0	0	0	0	0	0	0	947	667	23	1		1	ARL6IP4	12	123466489	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	2872966	123466489	10385406	258	145832											
NCOR2	9612	broad.mit.edu	37	chr12	124904424	124904424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagttaccgccagccatgcGgggtgctggccaccaagcaa	12	14	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124904424	T	T	124904424	1	4	181	0	1	0	0	0	0	0	0	0	10331	1131	39	1		1	NCOR2	12	124904424	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1437935	124904424	8947471	259	145833											
ZMYM5	9205	broad.mit.edu	37	chr13	20412016	20412016	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactgaattttaatacaagtCaaatatattaataataattg	3	4	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20412016	A	A	20412016	1	1	181	0	1	0	0	0	0	0	0	0	17829	841	29	3		3	ZMYM5	13	20412016	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		20412016	94757862	260	145834											
FRY	10129	broad.mit.edu	37	chr13	32836648	32836648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgatgatttgtacttccCttaaaacccttaaaaaaaaa	3	8	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32836648	A	A	32836648	1	1	181	0	1	0	0	0	0	0	0	0	6123	696	24	2		2	FRY	13	32836648	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	12424632	32836648	82333230	261	145835											
LCP1	3936	broad.mit.edu	37	chr13	46716467	46716467	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggccagtgtgagagtgcGgtttccttcattgagatctt	12	8	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46716467	A	A	46716467	3	1	181	1	0	0	0	0	1	0	0	0	8763	1116	39	4	437	4	LCP1	13	46716467	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	13879819	46716467	68453411	262	145836											
RAB20	55647	broad.mit.edu	37	chr13	111176305	111176305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggggagacacggtcccCagcgtccatattgggactgc	13	13	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111176305	A	A	111176305	3	1	181	1	0	0	0	0	1	0	0	0	13015	594	21	2	296	2	RAB20	13	111176305	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	64459838	111176305	3993573	263	145837											
TMCO3	55002	broad.mit.edu	37	chr13	114193714	114193714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggagctgggctgtttcCtggctggagcgctcgtctcc	14	13	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114193714	A	A	114193714	3	1	181	1	0	0	0	0	1	0	0	0	16120	680	24	2	1616	2	TMCO3	13	114193714	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	3017409	114193714	976164	264	145838											
GAS6	2621	broad.mit.edu	37	chr13	114531471	114531471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcctgacaccgttcccGggatcccagcacacggcgcg	12	17	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114531471	T	T	114531471	1	4	181	0	1	0	0	0	0	0	0	0	6311	1131	39	1		1	GAS6	13	114531471	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	337757	114531471	638407	265	145839											
TEP1	7011	broad.mit.edu	37	chr14	20854332	20854332	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctgtgcgttctccacctCcccaaggcacacttccagtt	7	17	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20854332	A	A	20854332	4	1	181	1	0	0	0	0	0	1	0	0	15881	864	30	3	5143	3	TEP1	14	20854332	Nonsense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08		20854332	86495208	266	145840											
OR10G2	26534	broad.mit.edu	37	chr14	22102089	22102089	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgctgttatcctcttcaGggcagacttcacttcctggt	8	13	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22102089	T	T	22102089	3	4	181	1	0	0	0	0	1	0	0	0	10993	991	35	2	25	2	OR10G2	14	22102089	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1247757	22102089	85247451	267	145841											
DCAF11	80344	broad.mit.edu	37	chr14	24586395	24586395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagtatattcagccacagGggtgggcttgggtacagttc	13	10	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24586395	A	A	24586395	1	1	181	0	1	0	0	0	0	0	0	0	4295	1247	43	4		4	DCAF11	14	24586395	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2484306	24586395	82763145	268	145842											
FAM179B	23116	broad.mit.edu	37	chr14	45433416	45433416	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgatgccatcttctgccGggggtaggtcaaaccatttg	11	10	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45433416	A	A	45433416	3	1	181	1	0	0	0	0	1	0	0	0	5551	1116	39	4	1794	4	FAM179B	14	45433416	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	20847021	45433416	61916124	269	145843											
GCH1	2643	broad.mit.edu	37	chr14	55310784	55310784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgagtctttggatcctccCggaacacacccaacattgtg	8	15	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55310784	A	A	55310784	3	1	181	1	0	0	0	0	1	0	0	0	6353	652	23	1	152	1	GCH1	14	55310784	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	9877368	55310784	52038756	270	145844											
SYT16	83851	broad.mit.edu	37	chr14	62567300	62567300	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcgtactatgaagcgtaaaGagatgattggctggattgcc	14	6	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62567300	T	T	62567300	4	4	181	1	0	0	0	0	0	1	0	0	15591	943	33	3	1835	3	SYT16	14	62567300	Nonsense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	7256516	62567300	44782240	271	145845											
KCNH5	27133	broad.mit.edu	37	chr14	63447531	63447531	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tatctgtggaatccatttatCctgatgttttcaaaatatat	5	6	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63447531	G	G	63447531	1	3	181	0	1	0	0	0	0	0	0	0	8105	870	30	4		4	KCNH5	14	63447531	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	880231	63447531	43902009	272	145846											
PAPLN	89932	broad.mit.edu	37	chr14	73720461	73720461	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgattccccctcctgccaGctggaaggcagggccatggg	13	15	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73720461	T	T	73720461	5	4	181	1	0	0	0	0	0	0	1	0	11522	985	34	3	1051	3	PAPLN	14	73720461	Splice_Site	SNP	G	TCGA-55-6642-01A-11D-1855-08	10272930	73720461	33629079	273	145847											
COQ6	51004	broad.mit.edu	37	chr14	74422039	74422039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcaaacaagatagaagtGgagagtattattgaagaaca	9	4	1	5			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74422039	T	T	74422039	1	4	181	0	1	0	0	0	0	0	0	0	3781	1363	47	2		2	COQ6	14	74422039	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	701578	74422039	32927501	274	145848											
C14orf179	112752	broad.mit.edu	37	chr14	76549114	76549114	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagatttctcagttcctccCaagctatacagcgcctccac	6	15	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76549114	A	A	76549114	1	1	181	0	1	0	0	0	0	0	0	0	1775	609	21	2		2	C14orf179	14	76549114	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	2127075	76549114	30800426	275	145849											
GALC	2581	broad.mit.edu	37	chr14	88431915	88431915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgggccgtcatcaaccCgcatctcccataaggcaact	7	17	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88431915	A	A	88431915	3	1	181	1	0	0	0	0	1	0	0	0	6263	652	23	1	1189	1	GALC	14	88431915	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	11882801	88431915	18917625	276	145850											
SLC24A4	123041	broad.mit.edu	37	chr14	92915520	92915520	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggtaatgatttctatgaCggtagctatgatgacccttc	10	8	1	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92915520	T	T	92915520	2	4	181	1	0	0	0	0	0	0	0	1	14582	535	19	4		4	SLC24A4	14	92915520	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	4483605	92915520	14434020	277	145851											
BCL11B	64919	broad.mit.edu	37	chr14	99640726	99640726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctcgccggtgtggctcCgccggtgcaccgtcaagttg	15	15	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99640726	A	A	99640726	3	1	181	1	0	0	0	0	1	0	0	0	1369	652	23	1	241	1	BCL11B	14	99640726	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	6725206	99640726	7708814	278	145852											
C15orf2	23742	broad.mit.edu	37	chr15	24924482	24924482	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtctgtttccaacttccGtaagagcacctgtggttcac	8	12	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24924482	T	T	24924482	2	4	181	1	0	0	0	0	0	0	0	1	1797	1132	40	3		3	C15orf2	15	24924482	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08		24924482	77606910	279	145853											
ATP10A	57194	broad.mit.edu	37	chr15	25947250	25947250	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaatcccagtggcacctGgtcaaatgcacagcagtgtg	10	12	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25947250	A	A	25947250	1	1	181	0	1	0	0	0	0	0	0	0	1120	1363	47	4		4	ATP10A	15	25947250	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1022768	25947250	76584142	280	145854											
GABRA5	2558	broad.mit.edu	37	chr15	27160003	27160003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggacttcccgatggatgCgcacgcttgccctctgaaat	11	12	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27160003	A	A	27160003	3	1	181	1	0	0	0	0	1	0	0	0	6224	768	27	3	569	3	GABRA5	15	27160003	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	1212753	27160003	75371389	281	145855											
TJP1	7082	broad.mit.edu	37	chr15	30092877	30092877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtcactgtatgttgttccCatatagctgtttcctccatt	7	11	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30092877	A	A	30092877	3	1	181	1	0	0	0	0	1	0	0	0	16052	595	21	2	5298	2	TJP1	15	30092877	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	2932874	30092877	72438515	282	145856											
TRPM1	4308	broad.mit.edu	37	chr15	31323249	31323249	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatgtagaagatgtttcGggccagtttccaagagggct	15	7	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323249	T	T	31323249	2	4	181	1	0	0	0	0	0	0	0	1	16710	1124	39	1		1	TRPM1	15	31323249	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	1230372	31323249	71208143	283	145857											
RYR3	6263	broad.mit.edu	37	chr15	33765564	33765564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtacaggaaggtgactcGgggcctggctcagcagttcc	15	11	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33765564	T	T	33765564	1	4	181	0	1	0	0	0	0	0	0	0	13881	1131	39	1		1	RYR3	15	33765564	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	2442315	33765564	68765828	284	145858											
LPCAT4	254531	broad.mit.edu	37	chr15	34653713	34653713	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctggctctgccccagcgTccacatagccagcggacagc	12	17	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34653713	C	C	34653713	3	2	181	1	0	0	0	0	1	0	0	0	9000	1667	58	5	559	5	LPCAT4	15	34653713	Missense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	888149	34653713	67877679	285	145859											
SQRDL	58472	broad.mit.edu	37	chr15	45954331	45954332	+	Intron	INS	-	T	T													gacgacgagaaggtaaccacINStgaggcctttagattttttg							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45954332	T	T	45954331	6	5	181	0	1	1	1	0	0	0	0	0	15247	580	20	0		0	SQRDL	15	45954331	Intron	INS	-	TCGA-55-6642-01A-11D-1855-08	11300618	45954331	56577061	286	145860											
FBN1	2200	broad.mit.edu	37	chr15	48757810	48757811	+	In_Frame_Ins	INS	-	GCG	GCG													aggtagtagccggttggacaINSgcggcactggaaactcccaa							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GCG	48757811	GCG	GCG	48757810	7	5	181	1	0	1	1	0	0	0	0	0	5759	188	7	0	3826	0	FBN1	15	48757810	In_Frame_Ins	INS	-	TCGA-55-6642-01A-11D-1855-08	2803479	48757810	53773582	287	145861											
GNB5	10681	broad.mit.edu	37	chr15	52425555	52425555	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaacagagaggtggcaTgaacattctactcactgacc	11	10	2	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52425555	G	G	52425555	1	3	181	0	1	0	0	0	0	0	0	0	6585	1479	51	5		5	GNB5	15	52425555	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	3667745	52425555	50105837	288	145862											
UNC13C	440279	broad.mit.edu	37	chr15	54527196	54527196	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaagaagtcattttacccAttgcaattattggttttatt	5	6	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54527196	G	G	54527196	1	3	181	0	1	0	0	0	0	0	0	0	17112	232	8	5		5	UNC13C	15	54527196	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	2101641	54527196	48004196	289	145863											
AP3B2	8120	broad.mit.edu	37	chr15	83333169	83333169	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctggtcttcattgtcGgactcactgctggactcccc	8	15	4	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83333169	T	T	83333169	2	4	181	1	0	0	0	0	0	0	0	1	747	1103	39	1		1	AP3B2	15	83333169	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	28805973	83333169	19198223	290	145864											
WDR90	197335	broad.mit.edu	37	chr16	716792	716793	+	Splice_Site	DNP	GG	TT	TT													tacaacctctgccagaagcaGgtacacgcagctgcccgcgt							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	716793	TT	TT	716792	5	4	181	1	0	0	0	0	0	0	1	0	17464	1014	35	2	5158	2	WDR90	16	716792	Splice_Site	DNP	GG	TCGA-55-6642-01A-11D-1855-08		716792	89637961	291	145865											
TPSG1	25823	broad.mit.edu	37	chr16	1275253	1275253	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggccccaagggccatGgtgtctgcccactgtaggga	13	14	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1275253	T	T	1275253	1	4	181	0	1	0	0	0	0	0	0	0	16550	1362	47	2		2	TPSG1	16	1275253	5'UTR	SNP	G	TCGA-55-6642-01A-11D-1855-08	558461	1275253	89079500	292	145866											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1818201	1818201	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggttctctccctgcagcCaataagacatcccccacctc	6	18	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1818201	A	A	1818201	2	1	181	1	0	0	0	0	0	0	0	1	9378	608	21	2		2	MAPK8IP3	16	1818201	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	542948	1818201	88536552	293	145867											
HAGH	3029	broad.mit.edu	37	chr16	1859417	1859417	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccgggctgcaggctgtgcCgagccacgcccaccggagga	15	16	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1859417	G	G	1859417	1	3	181	0	1	0	0	0	0	0	0	0	7011	667	23	4		4	HAGH	16	1859417	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	41216	1859417	88495336	294	145868											
MYH11	4629	broad.mit.edu	37	chr16	15854312	15854312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgaatggattaatgaatAcatgaatgagtgaacaggtg	14	2	0	5			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15854312	G	G	15854312	1	3	181	0	1	0	0	0	0	0	0	0	10125	406	14	5		5	MYH11	16	15854312	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	13994895	15854312	74500441	295	145869											
ABCC1	4363	broad.mit.edu	37	chr16	16218667	16218667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctggccgtgcggctggaGtgtgtgggcaactgcatcgt	18	9	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16218667	T	T	16218667	3	4	181	1	0	0	0	0	1	0	0	0	49	1020	36	3	3710	3	ABCC1	16	16218667	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	364355	16218667	74136086	296	145870											
ARHGAP17	55114	broad.mit.edu	37	chr16	24964353	24964353	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggaggccccagccccaattCggaaaaggccctaaagataa	10	12	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24964353	A	A	24964353	3	1	181	1	0	0	0	0	1	0	0	0	869	884	31	3	1822	3	ARHGAP17	16	24964353	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	8745686	24964353	65390400	297	145871											
TUFM	7284	broad.mit.edu	37	chr16	28854138	28854138	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaagtttactgacctccCcagccaggcaggccaaccct	7	16	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28854138	A	A	28854138	1	1	181	0	1	0	0	0	0	0	0	0	16897	638	22	2		2	TUFM	16	28854138	3'UTR	SNP	C	TCGA-55-6642-01A-11D-1855-08	3889785	28854138	61500615	298	145872											
CD19	930	broad.mit.edu	37	chr16	28947911	28947911	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctctccccacacccacCtcaggcctcggtaagaggca	8	18	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28947911	T	T	28947911	2	4	181	1	0	0	0	0	0	0	0	1	3003	668	24	4		4	CD19	16	28947911	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	93773	28947911	61406842	299	145873											
ABCC11	85320	broad.mit.edu	37	chr16	48244967	48244967	+	Frame_Shift_Del	DEL	G	-	-													atcccctcagaagcatgcccGttcctctccagctccagtgc							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48244967	-	-	48244967	7	5	181	1	0	1	0	1	0	0	0	0	51	1136	40	0	2728	0	ABCC11	16	48244967	Frame_Shift_Del	DEL	G	TCGA-55-6642-01A-11D-1855-08	19297056	48244967	42109786	300	145874											
IRX5	10265	broad.mit.edu	37	chr16	54967804	54967804	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgcgggctgcgtcggtccCggacttttctaatttattaa	10	10	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54967804	A	A	54967804	1	1	181	0	1	0	0	0	0	0	0	0	7917	667	23	1		1	IRX5	16	54967804	3'UTR	SNP	C	TCGA-55-6642-01A-11D-1855-08	6722837	54967804	35386949	301	145875											
CES8	283848	broad.mit.edu	37	chr16	67037231	67037231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcctgagggcactatcaGggaccaaggtgatgcgtgtg	15	9	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67037231	T	T	67037231	3	4	181	1	0	0	0	0	1	0	0	0	3303	1000	35	2	975	2	CES8	16	67037231	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	12069427	67037231	23317522	302	145876											
ACD	65057	broad.mit.edu	37	chr16	67693885	67693885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacaagcagcgtggcccCgacgtcggacgtatcagggg	15	12	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67693885	A	A	67693885	3	1	181	1	0	0	0	0	1	0	0	0	135	652	23	1	1257	1	ACD	16	67693885	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	656654	67693885	22660868	303	145877											
TAT	6898	broad.mit.edu	37	chr16	71604096	71604096	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggctccagaaaggagaaCcaattattcctaattccacg	7	11	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71604096	A	A	71604096	1	1	181	0	1	0	0	0	0	0	0	0	15709	522	18	3		3	TAT	16	71604096	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	3910211	71604096	18750657	304	145878											
WDR59	79726	broad.mit.edu	37	chr16	74920205	74920205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcgcgttctcgctcacGgggatcactgtaggtcagac	13	12	4	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74920205	T	T	74920205	3	4	181	1	0	0	0	0	1	0	0	0	17435	1116	39	1	427	1	WDR59	16	74920205	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	3316109	74920205	15434548	305	145879											
ADAMTS18	170692	broad.mit.edu	37	chr16	77369710	77369710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccacatgtccgggaaCattctgaccacttcgaccag	7	16	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77369710	A	A	77369710	3	1	181	1	0	0	0	0	1	0	0	0	263	478	17	3	1911	3	ADAMTS18	16	77369710	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	2449505	77369710	12985043	306	145880											
ALOX15	246	broad.mit.edu	37	chr17	4535116	4535116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgagagccttatgacccCcagtctgggatgccacacgt	12	13	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4535116	A	A	4535116	1	1	181	0	1	0	0	0	0	0	0	0	538	638	22	2		2	ALOX15	17	4535116	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		4535116	76660094	307	145881											
TM4SF5	9032	broad.mit.edu	37	chr17	4686178	4686178	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgctcaaccgcactctatGggatcggtgcgaggcgcccc	12	15	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4686178	T	T	4686178	3	4	181	1	0	0	0	0	1	0	0	0	16094	1357	47	2	439	2	TM4SF5	17	4686178	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	151062	4686178	76509032	308	145882											
RABEP1	9135	broad.mit.edu	37	chr17	5235390	5235390	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaccaagcaagaagctataGatgaagtgaaaagacagtgg	11	6	0	5			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5235390	T	T	5235390	3	4	181	1	0	0	0	0	1	0	0	0	13069	942	33	3	320	3	RABEP1	17	5235390	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	549212	5235390	75959820	309	145883											
POLR2A	5430	broad.mit.edu	37	chr17	7407079	7407079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttcgactggctgcttgGggagattgagtccaagttca	14	9	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7407079	T	T	7407079	3	4	181	1	0	0	0	0	1	0	0	0	12309	1232	43	2	3283	2	POLR2A	17	7407079	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	2171689	7407079	73788131	310	145884											
DNAH2	146754	broad.mit.edu	37	chr17	7644066	7644066	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcagctttcctctgggatGagtgaccggagggaacccgc	15	11	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7644066	T	T	7644066	1	4	181	0	1	0	0	0	0	0	0	0	4642	1305	45	3		3	DNAH2	17	7644066	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	236987	7644066	73551144	311	145885											
DHRS7C	201140	broad.mit.edu	37	chr17	9694562	9694562	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggccgctgattcccaGcagcagcagggggagcatca	16	11	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9694562	A	A	9694562	2	1	181	1	0	0	0	0	0	0	0	1	4537	962	34	4		4	DHRS7C	17	9694562	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	2050496	9694562	71500648	312	145886											
GLP2R	9340	broad.mit.edu	37	chr17	9792853	9792853	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagctgcagccctcacttaAcagtgggcggctcctacatc	10	14	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9792853	G	G	9792853	3	3	181	1	0	0	0	0	1	0	0	0	6517	43	2	5	1543	5	GLP2R	17	9792853	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	98291	9792853	71402357	313	145887											
MYH4	4622	broad.mit.edu	37	chr17	10348078	10348078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcatgattttcttgaaaaCtataggcctggaagatatga	8	6	2	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10348078	A	A	10348078	1	1	181	0	1	0	0	0	0	0	0	0	10131	580	20	3		3	MYH4	17	10348078	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	555225	10348078	70847132	314	145888											
MYH4	4622	broad.mit.edu	37	chr17	10356408	10356408	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttatgactatcagtgctGgtttcatgtcacaattgttt	9	7	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10356408	T	T	10356408	1	4	181	0	1	0	0	0	0	0	0	0	10131	1363	47	2		2	MYH4	17	10356408	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	8330	10356408	70838802	315	145889											
NLE1	54475	broad.mit.edu	37	chr17	33463011	33463011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactaaacaaaaaacgaaatAaaatgatctctagcacatta	3	7	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33463011	T	T	33463011	1	4	181	0	1	0	0	0	0	0	0	0	10555	377	13	5		5	NLE1	17	33463011	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	23106603	33463011	47732199	316	145890											
MYL4	4635	broad.mit.edu	37	chr17	45297468	45297468	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtcaggcttgcagccCcttggcttcctccttgtcca	10	16	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45297468	G	G	45297468	1	3	181	0	1	0	0	0	0	0	0	0	10143	638	22	4		4	MYL4	17	45297468	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	11834457	45297468	35897742	317	145891											
SKAP1	8631	broad.mit.edu	37	chr17	46248173	46248173	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattccacgtctggggttcaAgggattctcctgcctcagcc	10	13	4	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46248173	T	T	46248173	1	4	181	0	1	0	0	0	0	0	0	0	14468	87	3	5		5	SKAP1	17	46248173	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	950705	46248173	34947037	318	145892											
MRC2	9902	broad.mit.edu	37	chr17	60766030	60766030	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcaacaaaccggtgaGgatgccctccctgttcccct	10	15	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60766030	C	C	60766030	1	2	181	0	1	0	0	0	0	0	0	0	9852	1015	35	4		4	MRC2	17	60766030	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	14517857	60766030	20429180	319	145893											
ARSG	22901	broad.mit.edu	37	chr17	66391360	66391360	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaggaggtacttgcccacAtgtaggctctttaggaggct	14	8	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66391360	T	T	66391360	1	4	181	0	1	0	0	0	0	0	0	0	996	232	8	5		5	ARSG	17	66391360	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	5625330	66391360	14803850	320	145894											
SDK2	54549	broad.mit.edu	37	chr17	71354264	71354264	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtgatgggccctttgccCgggtctccgctggaccagtg	16	13	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71354264	A	A	71354264	2	1	181	1	0	0	0	0	0	0	0	1	14082	639	23	1		1	SDK2	17	71354264	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	4962904	71354264	9840946	321	145895											
GPR142	350383	broad.mit.edu	37	chr17	72368582	72368582	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccacacggcagccaactTcggcctctactgctttgtca	8	16	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72368582	A	A	72368582	3	1	181	1	0	0	0	0	1	0	0	0	6715	1783	62	5	1246	5	GPR142	17	72368582	Missense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	1014318	72368582	8826628	322	145896											
TMC6	11322	broad.mit.edu	37	chr17	76117707	76117707	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggtccccagacacagcagcCacacaagccccagcacagcc	8	20	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76117707	G	G	76117707	3	3	181	1	0	0	0	0	1	0	0	0	16112	595	21	4	1144	4	TMC6	17	76117707	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	3749125	76117707	5077503	323	145897											
ASPSCR1	79058	broad.mit.edu	37	chr17	79970046	79970046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggcctgtcttccttcGggcgcatggatgggcgaggt	16	11	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79970046	T	T	79970046	1	4	181	0	1	0	0	0	0	0	0	0	1063	1131	39	1		1	ASPSCR1	17	79970046	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	3852339	79970046	1225164	324	145898											
LAMA1	284217	broad.mit.edu	37	chr18	6959354	6959354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtacctccgattcctgacCaaggagatggaatgcgcttg	11	10	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6959354	A	A	6959354	3	1	181	1	0	0	0	0	1	0	0	0	8677	593	21	2	1503	2	LAMA1	18	6959354	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08		6959354	71117894	325	145899											
ASXL3	80816	broad.mit.edu	37	chr18	31241640	31241640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattcaagccttactaacaCagcagtgcaaagcaagttag	8	9	1	1	rs140873836	by1000genomes	TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31241640	A	A	31241640	3	1	181	1	0	0	0	0	1	0	0	0	1072	478	17	3	434	3	ASXL3	18	31241640	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	24282286	31241640	46835608	326	145900											
SERPINB4	6318	broad.mit.edu	37	chr18	61310642	61310642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacgtaatgatgctgataGctaccttgctaatttgttgt	8	7	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61310642	T	T	61310642	1	4	181	0	1	0	0	0	0	0	0	0	14216	986	34	3		3	SERPINB4	18	61310642	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	30069002	61310642	16766606	327	145901											
RTTN	25914	broad.mit.edu	37	chr18	67688070	67688070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccttcaaaaataacagcCtatcacaatgtcttctcagt	3	12	4	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67688070	A	A	67688070	1	1	181	0	1	0	0	0	0	0	0	0	13848	696	24	2		2	RTTN	18	67688070	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	6377428	67688070	10389178	328	145902											
POLRMT	5442	broad.mit.edu	37	chr19	621052	621052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaatgcgggggccccgcCcctaccgtcaagggttggtc	17	13	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	621052	A	A	621052	1	1	181	0	1	0	0	0	0	0	0	0	12333	638	22	2		2	POLRMT	19	621052	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		621052	58507931	329	145903											
MED16	10025	broad.mit.edu	37	chr19	876967	876967	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggccccacctgccacgggCccccacctgctgcagggcag	14	19	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	876967	G	G	876967	1	3	181	0	1	0	0	0	0	0	0	0	9527	754	26	4		4	MED16	19	876967	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	255915	876967	58252016	330	145904											
C19orf6	91304	broad.mit.edu	37	chr19	1012018	1012018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggagccgtgagcgccCgcccccacccgcgccctcgc	12	21	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1012018	A	A	1012018	1	1	181	0	1	0	0	0	0	0	0	0	1960	667	23	1		1	C19orf6	19	1012018	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	135051	1012018	58116965	331	145905											
ABCA7	10347	broad.mit.edu	37	chr19	1042354	1042354	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctccactggaaccaccCatgctggatgtcgcggagct	11	14	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1042354	A	A	1042354	2	1	181	1	0	0	0	0	0	0	0	1	37	581	21	2		2	ABCA7	19	1042354	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	30336	1042354	58086629	332	145906											
HMHA1	23526	broad.mit.edu	37	chr19	1073450	1073450	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccggtcagttcttgcagGgatggtcacctcccagagtg	13	12	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1073450	T	T	1073450	1	4	181	0	1	0	0	0	0	0	0	0	7307	1247	43	2		2	HMHA1	19	1073450	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	31096	1073450	58055533	333	145907											
ZNF77	58492	broad.mit.edu	37	chr19	2934305	2934305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacagctgaaggctttccCacactccttacactcatagg	9	13	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2934305	A	A	2934305	3	1	181	1	0	0	0	0	1	0	0	0	18271	594	21	2	821	2	ZNF77	19	2934305	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	1860855	2934305	56194678	334	145908											
RFX2	5990	broad.mit.edu	37	chr19	6004289	6004289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagctcttggcaaagttacGgatggcctgtgtcaaggtac	12	9	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6004289	T	T	6004289	3	4	181	1	0	0	0	0	1	0	0	0	13371	1116	39	1	772	1	RFX2	19	6004289	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	3069984	6004289	53124694	335	145909											
ZNF560	147741	broad.mit.edu	37	chr19	9577542	9577542	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgaaagcacatggaatttCgaaaggaatttccacatgcg	9	8	0	1	rs148650284		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9577542	T	T	9577542	3	4	181	1	0	0	0	0	1	0	0	0	18118	884	31	4	295	4	ZNF560	19	9577542	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	3573253	9577542	49551441	336	145910											
CACNA1A	773	broad.mit.edu	37	chr19	13339571	13339571	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgagagggggagatattactCgtaataaactgtacatatcc	10	7	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13339571	T	T	13339571	3	4	181	1	0	0	0	0	1	0	0	0	2564	884	31	4	2098	4	CACNA1A	19	13339571	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	3762029	13339571	45789412	337	145911											
ZNF676	163223	broad.mit.edu	37	chr19	22375772	22375772	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaggactggcttcctcattGactttggacttctcattcat	7	10	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22375772	A	A	22375772	1	1	181	0	1	0	0	0	0	0	0	0	18210	1305	45	4		4	ZNF676	19	22375772	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	9036201	22375772	36753211	338	145912											
FFAR2	2867	broad.mit.edu	37	chr19	35941425	35941425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaacgccagtctggaccCcctgctcttctatttctctt	5	16	5	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35941425	A	A	35941425	3	1	181	1	0	0	0	0	1	0	0	0	5885	623	22	2	811	2	FFAR2	19	35941425	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	13565653	35941425	23187558	339	145913											
TMEM149	79713	broad.mit.edu	37	chr19	36231408	36231408	+	Frame_Shift_Del	DEL	G	-	-													cagaagaacactttcggaacGggggcgttacgaaatcgccg							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36231408	-	-	36231408	7	5	181	1	0	1	0	1	0	0	0	0	16185	1116	39	0	864	0	TMEM149	19	36231408	Frame_Shift_Del	DEL	G	TCGA-55-6642-01A-11D-1855-08	289983	36231408	22897575	340	145914											
HCST	10870	broad.mit.edu	37	chr19	36393396	36393397	+	Translation_Start_Site	DNP	GG	CA	CA													gatggccttgacaccagcagGgtgacatccgctattgctac							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	36393397	CA	CA	36393396	1	2	181	1	0	0	0	0	0	0	0	0	7070	1247	43	4		4	HCST	19	36393396	Translation_Start_Site	DNP	GG	TCGA-55-6642-01A-11D-1855-08	161988	36393396	22735587	341	145915											
GGN	199720	broad.mit.edu	37	chr19	38876275	38876275	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgaggaccatctccatgcaAgccatccttacgggtcgcgc	11	15	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38876275	C	C	38876275	3	2	181	1	0	0	0	0	1	0	0	0	6422	69	3	5	339	5	GGN	19	38876275	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	2482879	38876275	20252708	342	145916											
RYR1	6261	broad.mit.edu	37	chr19	38976748	38976748	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgaggatgctgggggaggCggtgcgcgacggtgggcagc	22	8	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38976748	G	G	38976748	3	3	181	1	0	0	0	0	1	0	0	0	13879	768	27	4	5587	4	RYR1	19	38976748	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	100473	38976748	20152235	343	145917											
PLEKHG2	64857	broad.mit.edu	37	chr19	39908644	39908644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggcggagggggtggcCcccggctacgagggggtgag	24	8	0	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39908644	A	A	39908644	3	1	181	1	0	0	0	0	1	0	0	0	12164	623	22	2	1012	2	PLEKHG2	19	39908644	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	931896	39908644	19220339	344	145918											
CYP2S1	29785	broad.mit.edu	37	chr19	41703808	41703808	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcggaggcccggtgtctGgtggagacattccaggggac	18	10	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41703808	T	T	41703808	2	4	181	1	0	0	0	0	0	0	0	1	4207	1335	47	2		2	CYP2S1	19	41703808	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	1795164	41703808	17425175	345	145919											
PSG5	5673	broad.mit.edu	37	chr19	43679940	43679940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgtctatacttggaccGgagaaagactgagaggactg	14	6	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43679940	A	A	43679940	1	1	181	0	1	0	0	0	0	0	0	0	12764	1131	39	4		4	PSG5	19	43679940	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1976132	43679940	15449043	346	145920											
SEPW1	6415	broad.mit.edu	37	chr19	48284392	48284392	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaactccccaggccaccGggttctttgaagtgatggta	13	10	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48284392	T	T	48284392	3	4	181	1	0	0	0	0	1	0	0	0	14185	1116	39	1	150	1	SEPW1	19	48284392	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	4604452	48284392	10844591	347	145921											
SHANK1	50944	broad.mit.edu	37	chr19	51215303	51215303	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcaccacccaccatggcCgtgtggaacagaggggtcag	15	12	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51215303	T	T	51215303	2	4	181	1	0	0	0	0	0	0	0	1	14377	639	23	4		4	SHANK1	19	51215303	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08	2930911	51215303	7913680	348	145922											
LIM2	3982	broad.mit.edu	37	chr19	51883636	51883636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgaccccagactccataGgcctggagtcttcctcctga	8	18	1	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51883636	T	T	51883636	1	4	181	0	1	0	0	0	0	0	0	0	8867	1015	35	2		2	LIM2	19	51883636	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	668333	51883636	7245347	349	145923											
ZNF160	90338	broad.mit.edu	37	chr19	53572754	53572754	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaaaggcttttccacactCattacacttgtaaggtttct	5	10	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53572754	G	G	53572754	3	3	181	1	0	0	0	0	1	0	0	0	17865	835	29	4	1427	4	ZNF160	19	53572754	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	1689118	53572754	5556229	350	145924											
ZNF813	126017	broad.mit.edu	37	chr19	53989806	53989806	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcaattaaatccatgctttCccctctctcctcttctcatt	2	15	3	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53989806	T	T	53989806	1	4	181	0	1	0	0	0	0	0	0	0	18304	870	30	4		4	ZNF813	19	53989806	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	417052	53989806	5139177	351	145925											
PEG3	5178	broad.mit.edu	37	chr19	57327542	57327542	+	Frame_Shift_Del	DEL	G	-	-													ggaatcttctggttttcataGgggttagagctaatggtgaa							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57327542	-	-	57327542	7	5	181	1	0	1	0	1	0	0	0	0	11814	987	35	0	2502	0	PEG3	19	57327542	Frame_Shift_Del	DEL	G	TCGA-55-6642-01A-11D-1855-08	3337736	57327542	1801441	352	145926											
ZIM3	114026	broad.mit.edu	37	chr19	57647012	57647012	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttgacttctgcttgtaGgcatttccacagttctcaca	7	10	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57647012	T	T	57647012	2	4	181	1	0	0	0	0	0	0	0	1	17811	987	35	2		2	ZIM3	19	57647012	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	319470	57647012	1481971	353	145927											
ZNF547	284306	broad.mit.edu	37	chr19	57883173	57883174	+	Missense_Mutation	DNP	GG	TT	TT													catgtggtttttgaagacgtGgccatatatttctcccagga							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	57883174	TT	TT	57883173	3	4	181	1	0	0	0	0	1	0	0	0	18106	1335	47	2	54	2	ZNF547	19	57883173	Missense_Mutation	DNP	GG	TCGA-55-6642-01A-11D-1855-08	236161	57883173	1245810	354	145928											
SEL1L2	80343	broad.mit.edu	37	chr20	13868479	13868479	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtagaacattgattccCgacaaatatctgtaccccta	5	11	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13868479	A	A	13868479	2	1	181	1	0	0	0	0	0	0	0	1	14124	639	23	1		1	SEL1L2	20	13868479	Silent	SNP	C	TCGA-55-6642-01A-11D-1855-08		13868479	49157041	355	145929											
CSRP2BP	57325	broad.mit.edu	37	chr20	18162329	18162329	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctgagtaattatttctaTataaccagtgtttctttctc	5	8	3	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18162329	C	C	18162329	1	2	181	0	1	0	0	0	0	0	0	0	4002	1421	49	5		5	CSRP2BP	20	18162329	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	4293850	18162329	44863191	356	145930											
NINL	22981	broad.mit.edu	37	chr20	25477474	25477474	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagggtcagatgggaccCcactgctggcctgacccgcc	13	15	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25477474	A	A	25477474	1	1	181	0	1	0	0	0	0	0	0	0	10515	638	22	2		2	NINL	20	25477474	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	7315145	25477474	37548046	357	145931											
C20orf114	92747	broad.mit.edu	37	chr20	31879580	31879580	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggggctactcccagcccCgtctctaacacgtcctgtga	9	16	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31879580	T	T	31879580	1	4	181	0	1	0	0	0	0	0	0	0	2104	667	23	4		4	C20orf114	20	31879580	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	6402106	31879580	31145940	358	145932											
BPI	671	broad.mit.edu	37	chr20	36954584	36954584	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagacattgaaggtatttaAgtaggggcaggccaaggtag	15	4	0	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36954584	G	G	36954584	1	3	181	0	1	0	0	0	0	0	0	0	1499	87	3	5		5	BPI	20	36954584	Intron	SNP	A	TCGA-55-6642-01A-11D-1855-08	5075004	36954584	26070936	359	145933											
SLC32A1	140679	broad.mit.edu	37	chr20	37356236	37356236	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgaggagaatgaagacggcGaggtggtgcgcgtgcgggac	20	7	0	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37356236	T	T	37356236	4	4	181	1	0	0	0	0	0	1	0	0	14679	1059	37	3	538	3	SLC32A1	20	37356236	Nonsense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	401652	37356236	25669284	360	145934											
PTPRT	11122	broad.mit.edu	37	chr20	40827790	40827790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccataccctatgcctggcaGcacctgatcaatgtgtgggg	11	12	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40827790	T	T	40827790	1	4	181	0	1	0	0	0	0	0	0	0	12920	986	34	3		3	PTPRT	20	40827790	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	3471554	40827790	22197730	361	145935											
ZMYND8	23613	broad.mit.edu	37	chr20	45985449	45985449	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcaatacttataaaacAtggaggacaggctcctagtt	8	7	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45985449	C	C	45985449	1	2	181	0	1	0	0	0	0	0	0	0	17837	232	8	5		5	ZMYND8	20	45985449	5'Flank	SNP	A	TCGA-55-6642-01A-11D-1855-08	5157659	45985449	17040071	362	145936											
PREX1	57580	broad.mit.edu	37	chr20	47296209	47296209	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggacatgatgtcctccaGctcacttcgggccttgtagg	11	12	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47296209	C	C	47296209	3	2	181	1	0	0	0	0	1	0	0	0	12582	962	34	4	3576	4	PREX1	20	47296209	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1310760	47296209	15729311	363	145937											
CYP24A1	1591	broad.mit.edu	37	chr20	52782307	52782307	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggccatgatgaagttcaCagcttcatcccctgcattct	8	12	3	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52782307	A	A	52782307	3	1	181	1	0	0	0	0	1	0	0	0	4187	478	17	3	866	3	CYP24A1	20	52782307	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	5486098	52782307	10243213	364	145938											
GATA5	140628	broad.mit.edu	37	chr20	61039900	61039900	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcctggggacctaggccaAggccagcgcacaccaggcct	14	15	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61039900	T	T	61039900	3	4	181	1	0	0	0	0	1	0	0	0	6319	69	3	5	11	5	GATA5	20	61039900	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	8257593	61039900	1985620	365	145939											
COL20A1	57642	broad.mit.edu	37	chr20	61936923	61936923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtttgtgagtaagtccacCgtctgccagctgggtaccca	12	11	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61936923	A	A	61936923	1	1	181	0	1	0	0	0	0	0	0	0	3711	667	23	1		1	COL20A1	20	61936923	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	897023	61936923	1088597	366	145940											
KCNQ2	3785	broad.mit.edu	37	chr20	62046267	62046267	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacacccaccttctgagttcTgccgtgacgcggcacccttg	9	17	2	2			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62046267	A	A	62046267	3	1	181	1	0	0	0	0	1	0	0	0	8153	1580	55	5	1124	5	KCNQ2	20	62046267	Missense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	109344	62046267	979253	367	145941											
MYT1	4661	broad.mit.edu	37	chr20	62836509	62836509	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagatttggagcccctgccCactctgcagatggagaactt	11	11	1	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62836509	T	T	62836509	1	4	181	0	1	0	0	0	0	0	0	0	10200	609	21	4		4	MYT1	20	62836509	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	790242	62836509	189011	368	145942											
RIPK4	54101	broad.mit.edu	37	chr21	43161902	43161902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagctccacgacacccCgcaccctcctctccacggcc	8	22	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43161902	A	A	43161902	3	1	181	1	0	0	0	0	1	0	0	0	13494	652	23	1	907	1	RIPK4	21	43161902	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08		43161902	4967993	369	145943											
PRODH	5625	broad.mit.edu	37	chr22	18910502	18910502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcccaccccagtccccCacacagcccctgtggccagc	7	24	0	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18910502	A	A	18910502	1	1	181	0	1	0	0	0	0	0	0	0	12654	609	21	2		2	PRODH	22	18910502	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		18910502	32394064	370	145944											
PITPNB	23760	broad.mit.edu	37	chr22	28293847	28293847	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacaccaaggagccctcGggagcaatcatcctcacgaa	9	13	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28293847	T	T	28293847	2	4	181	1	0	0	0	0	0	0	0	1	12043	1103	39	1		1	PITPNB	22	28293847	Silent	SNP	G	TCGA-55-6642-01A-11D-1855-08	9383345	28293847	23010719	371	145945											
SH3BP1	23616	broad.mit.edu	37	chr22	38061864	38061864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcgcagacttgacagagGggttggaggactgagcccac	15	10	0	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38061864	T	T	38061864	3	4	181	1	0	0	0	0	1	0	0	0	14357	1232	43	2		2	SH3BP1	22	38061864	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	9768017	38061864	13242702	372	145946											
SYNGR1	9145	broad.mit.edu	37	chr22	39770447	39770447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatggcgtggccgtgggcGtgctcgccttcctcacctgc	14	15	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39770447	T	T	39770447	3	4	181	1	0	0	0	0	1	0	0	0	15567	1145	40	3	338	3	SYNGR1	22	39770447	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	1708583	39770447	11534119	373	145947											
ARFGAP3	26286	broad.mit.edu	37	chr22	43194973	43194973	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttccagcagttgaagaTtgaagcaggtctcattttca	8	7	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43194973	C	C	43194973	1	2	181	0	1	0	0	0	0	0	0	0	853	1508	52	5		5	ARFGAP3	22	43194973	Intron	SNP	T	TCGA-55-6642-01A-11D-1855-08	3424526	43194973	8109593	374	145948											
PNPLA5	150379	broad.mit.edu	37	chr22	44285157	44285157	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacagagtctgactcacGgggcccttgaccttggccaa	11	14	2	3			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44285157	T	T	44285157	1	4	181	0	1	0	0	0	0	0	0	0	12263	1131	39	1		1	PNPLA5	22	44285157	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	1090184	44285157	7019409	375	145949											
MID1IP1	58526	broad.mit.edu	37	chrX	38664680	38664681	+	Frame_Shift_Del	DEL	CT	-	-													tgcacactgtgctctcgaaaCtcacgcgcaaagccaacatc							TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38664681	-	-	38664680	7	5	181	1	0	1	0	1	0	0	0	0	9670	565	20	0	483	0	MID1IP1	23	38664680	Frame_Shift_Del	DEL	CT	TCGA-55-6642-01A-11D-1855-08		38664680	116605880	376	145950											
ZNF630	57232	broad.mit.edu	37	chrX	47918714	47918714	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcactgcattcaaagggctTctctctggtatgaactctct	7	11	5	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47918714	G	G	47918714	3	3	181	1	0	0	0	0	1	0	0	0	18181	1792	62	5	860	5	ZNF630	23	47918714	Missense_Mutation	SNP	T	TCGA-55-6642-01A-11D-1855-08	9254034	47918714	107351846	377	145951											
PGK1	5230	broad.mit.edu	37	chrX	77373585	77373585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgccacagaaggctggtGggtttttgatgaagaaggag	15	5	1	4			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77373585	T	T	77373585	3	4	181	1	0	0	0	0	1	0	0	0	11885	1348	47	2	581	2	PGK1	23	77373585	Missense_Mutation	SNP	G	TCGA-55-6642-01A-11D-1855-08	29454871	77373585	77896975	378	145952											
TBX22	50945	broad.mit.edu	37	chrX	79281087	79281087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcacctaatgccacagCatgtgttttttcaggtacgt	9	10	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79281087	A	A	79281087	1	1	181	0	1	0	0	0	0	0	0	0	15780	725	25	3		3	TBX22	23	79281087	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08	1907502	79281087	75989473	379	145953											
BCORL1	63035	broad.mit.edu	37	chrX	129146858	129146858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccagcagttgcctctcGggcctcaggacacttgcacc	10	15	2	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129146858	T	T	129146858	1	4	181	0	1	0	0	0	0	0	0	0	1392	1131	39	1		1	BCORL1	23	129146858	Intron	SNP	G	TCGA-55-6642-01A-11D-1855-08	49865771	129146858	26123702	380	145954											
FRMD7	90167	broad.mit.edu	37	chrX	131234732	131234732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttaaacaatgccttccCggatgacttttgctaaacaa	7	10	0	1	rs137852210		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131234732	A	A	131234732	3	1	181	1	0	0	0	0	1	0	0	0	6115	652	23	1	2118	1	FRMD7	23	131234732	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	2087874	131234732	24035828	381	145955											
SLITRK2	84631	broad.mit.edu	37	chrX	144905997	144905997	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaacagacggccatgtctAcaactatatccccccacctg	5	15	1	1			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144905997	T	T	144905997	3	4	181	1	0	0	0	0	1	0	0	0	14857	391	14	5	2056	5	SLITRK2	23	144905997	Missense_Mutation	SNP	A	TCGA-55-6642-01A-11D-1855-08	13671265	144905997	10364563	382	145956											
SSR4	6748	broad.mit.edu	37	chrX	153060161	153060161	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgatggcggcgatggcatctCtcggcgccctggcgctgctc	15	15	1	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153060161	G	G	153060161	3	3	181	1	0	0	0	0	1	0	0	0	15311	913	32	4	21	4	SSR4	23	153060161	Missense_Mutation	SNP	C	TCGA-55-6642-01A-11D-1855-08	8154164	153060161	2210399	383	145957											
KDM5D	8284	broad.mit.edu	37	chrY	21869674	21869674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtaggtcagcagtccaCcctcgcccttgtctggcatc	10	14	2	0			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21869674	A	A	21869674	1	1	181	0	1	0	0	0	0	0	0	0	8206	522	18	3		3	KDM5D	24	21869674	Intron	SNP	C	TCGA-55-6642-01A-11D-1855-08		21869674	37503892	384	145958											
MORN1	79906	broad.mit.edu	37	chr1	2321447	2321447	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccataacctgagtattgaGaagacacacacaggtaagca	8	10	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2321447	C	C	2321447	1	2	182	0	1	0	0	0	0	0	0	0	9802	957	33	4		4	MORN1	1	2321447	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08		2321447	246929174	1	145959											
PLEKHG5	57449	broad.mit.edu	37	chr1	6528641	6528641	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtctccgtggagccatctGaggcactgtggggccaggag	18	10	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6528641	C	C	6528641	4	2	182	1	0	0	0	0	0	1	0	0	12168	1294	45	4	773	4	PLEKHG5	1	6528641	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	4207194	6528641	242721980	2	145960											
RERE	473	broad.mit.edu	37	chr1	8674606	8674606	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgatagcttttaaaaacGggattctccttacccctaca	5	11	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8674606	T	T	8674606	1	4	182	0	1	0	0	0	0	0	0	0	13339	1131	39	1		1	RERE	1	8674606	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	2145965	8674606	240576015	3	145961											
PIK3CD	5293	broad.mit.edu	37	chr1	9779005	9779005	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccggctgggaggggtgcaGaccccggagagccagtacag	19	11	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9779005	A	A	9779005	1	1	182	0	1	0	0	0	0	0	0	0	12010	957	33	4		4	PIK3CD	1	9779005	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1104399	9779005	239471616	4	145962											
MTOR	2475	broad.mit.edu	37	chr1	11227550	11227550	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacactccggccgctgcctcCggctgctgtagcttattatt	9	14	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11227550	G	G	11227550	2	3	182	1	0	0	0	0	0	0	0	1	10048	639	23	4		4	MTOR	1	11227550	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1448545	11227550	238023071	5	145963											
PTCHD2	57540	broad.mit.edu	37	chr1	11579584	11579584	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctggcacaggcctgccCtactgaccccagtgagaccc	11	16	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11579584	T	T	11579584	1	4	182	0	1	0	0	0	0	0	0	0	12839	696	24	4		4	PTCHD2	1	11579584	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	352034	11579584	237671037	6	145964											
PLOD1	5351	broad.mit.edu	37	chr1	12024347	12024347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacgtggacattgtgcagGggcggcgtgtgtgagtacct	16	8	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12024347	T	T	12024347	3	4	182	1	0	0	0	0	1	0	0	0	12196	1232	43	2	1364	2	PLOD1	1	12024347	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	444763	12024347	237226274	7	145965											
FBXO42	54455	broad.mit.edu	37	chr1	16578744	16578744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggttttccacaatttaGgacctgtcctcctgctagcc	8	12	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16578744	T	T	16578744	1	4	182	0	1	0	0	0	0	0	0	0	5808	1015	35	2		2	FBXO42	1	16578744	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	4554397	16578744	232671877	8	145966											
ALDH4A1	8659	broad.mit.edu	37	chr1	19209814	19209814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttggtgctcgggggcaCgctgatgggctgctgcccct	17	12	0	1	rs138334153		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19209814	A	A	19209814	3	1	182	1	0	0	0	0	1	0	0	0	501	536	19	3	1169	3	ALDH4A1	1	19209814	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2631070	19209814	230040807	9	145967											
RPA2	6118	broad.mit.edu	37	chr1	28241029	28241029	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaaaaccacagaacgcggCcgccactgcgccgctctggc	12	17	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28241029	A	A	28241029	1	1	182	0	1	0	0	0	0	0	0	0	13648	754	26	3		3	RPA2	1	28241029	5'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	9031215	28241029	221009592	10	145968											
SDC3	9672	broad.mit.edu	37	chr1	31351584	31351584	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctcactgcgccagcgctGggcctagggaaggtagaggt	16	10	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31351584	A	A	31351584	4	1	182	1	0	0	0	0	0	1	0	0	14066	1357	47	4	1202	4	SDC3	1	31351584	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3110555	31351584	217899037	11	145969											
IQCC	55721	broad.mit.edu	37	chr1	32671964	32671964	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaacccacccttcccagtGataagcttttctcactggaa	7	13	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32671964	A	A	32671964	1	1	182	0	1	0	0	0	0	0	0	0	7874	1305	45	4		4	IQCC	1	32671964	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1320380	32671964	216578657	12	145970											
CSF3R	1441	broad.mit.edu	37	chr1	36933887	36933887	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaagagcccggttggacttCttgtggcttcccagacactg	12	12	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36933887	T	T	36933887	1	4	182	0	1	0	0	0	0	0	0	0	3971	928	32	4		4	CSF3R	1	36933887	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	4261923	36933887	212316734	13	145971											
GUCA2B	2981	broad.mit.edu	37	chr1	42621290	42621290	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccctgggtaccctgagcCcaccagggacacctcgccct	10	18	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42621290	A	A	42621290	1	1	182	0	1	0	0	0	0	0	0	0	6957	638	22	2		2	GUCA2B	1	42621290	3'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	5687403	42621290	206629331	14	145972											
SLC6A9	6536	broad.mit.edu	37	chr1	44463225	44463225	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagctgtgctcatatccGggagtcctggaggcggctgg	17	10	1	0	rs2286246		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44463225	T	T	44463225	2	4	182	1	0	0	0	0	0	0	0	1	14805	1115	39	1		1	SLC6A9	1	44463225	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	1841935	44463225	204787396	15	145973											
RNF220	55182	broad.mit.edu	37	chr1	44878356	44878356	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcctcatttctgatcGggaagcctcatctagcccag	9	14	5	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44878356	T	T	44878356	3	4	182	1	0	0	0	0	1	0	0	0	13594	1116	39	1	589	1	RNF220	1	44878356	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	415131	44878356	204372265	16	145974											
PRDX1	5052	broad.mit.edu	37	chr1	45980163	45980163	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccactctgttgtcctgttatCagacagatggcttaccttcc	7	13	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45980163	G	G	45980163	1	3	182	0	1	0	0	0	0	0	0	0	12570	841	29	4		4	PRDX1	1	45980163	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1101807	45980163	203270458	17	145975											
POMGNT1	55624	broad.mit.edu	37	chr1	46656198	46656198	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctttcttcagactgaagagGagggagaaatgggtcagggg	16	5	4	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46656198	C	C	46656198	1	2	182	0	1	0	0	0	0	0	0	0	12338	1189	41	4		4	POMGNT1	1	46656198	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	676035	46656198	202594423	18	145976											
CYP4B1	1580	broad.mit.edu	37	chr1	47278436	47278436	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcctgttctgcctgcaacAgcagtgccaaagccctgctc	10	15	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47278436	T	T	47278436	1	4	182	0	1	0	0	0	0	0	0	0	4218	203	7	5		5	CYP4B1	1	47278436	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	622238	47278436	201972185	19	145977											
ZCCHC11	23318	broad.mit.edu	37	chr1	52940851	52940851	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagatgaagagtcctgtcCgtggtcagcaaaatctagtt	11	7	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52940851	A	A	52940851	4	1	182	1	0	0	0	0	0	1	0	0	17706	661	23	1	2629	1	ZCCHC11	1	52940851	Nonsense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	5662415	52940851	196309770	20	145978											
INADL	10207	broad.mit.edu	37	chr1	62237198	62237198	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagcaattgcattattacAacaaaccactggatctttga	6	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62237198	G	G	62237198	3	3	182	1	0	0	0	0	1	0	0	0	7801	130	5	5	638	5	INADL	1	62237198	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	9296347	62237198	187013423	21	145979											
ELTD1	64123	broad.mit.edu	37	chr1	79392851	79392851	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactcttaagataaacataaAaattgaatagacaaacattt	4	5	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79392851	C	C	79392851	1	2	182	0	1	0	0	0	0	0	0	0	5126	29	1	5		5	ELTD1	1	79392851	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	17155653	79392851	169857770	22	145980											
TGFBR3	7049	broad.mit.edu	37	chr1	92193234	92193234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaataattttcaggcttccCttaacatcaaaagatttgat	4	8	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92193234	A	A	92193234	3	1	182	1	0	0	0	0	1	0	0	0	15946	680	24	2	1732	2	TGFBR3	1	92193234	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	12800383	92193234	157057387	23	145981											
COL11A1	1301	broad.mit.edu	37	chr1	103548461	103548461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtttgtgcaaaatccCgttgtttttgatattccctc	6	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103548461	A	A	103548461	2	1	182	1	0	0	0	0	0	0	0	1	3699	639	23	1		1	COL11A1	1	103548461	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	11355227	103548461	145702160	24	145982											
AKNAD1	254268	broad.mit.edu	37	chr1	109392083	109392083	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcactccagcctgggtgacAgagtgagaccctgtctcaaa	11	12	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109392083	C	C	109392083	1	2	182	0	1	0	0	0	0	0	0	0	464	203	7	5		5	AKNAD1	1	109392083	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	5843622	109392083	139858538	25	145983											
PDE4DIP	9659	broad.mit.edu	37	chr1	144923631	144923631	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggttgacagactcaggctaGagccagtcacatcctcagga	11	11	3	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144923631	C	C	144923631	1	2	182	0	1	0	0	0	0	0	0	0	11737	957	33	4		4	PDE4DIP	1	144923631	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	35531548	144923631	104326990	26	145984											
NBPF10	100132406	broad.mit.edu	37	chr1	145297759	145297759	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtctaggaggcacaccctCtctggcatctatgatgggcc	11	12	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145297759	G	G	145297759	1	3	182	0	1	0	0	0	0	0	0	0	10287	928	32	4		4	NBPF10	1	145297759	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	374128	145297759	103952862	27	145985											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149783640	149783640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgttgtagtgcgccaggCgggacgcctctcccgcgatg	15	13	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149783640	A	A	149783640	3	1	182	1	0	0	0	0	1	0	0	0	7247	768	27	3	562	3	HIST2H2BF	1	149783640	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	4485881	149783640	99466981	28	145986											
SV2A	9900	broad.mit.edu	37	chr1	149880915	149880915	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acttttctgccctcccacctCccttcagctcacccatcacc	2	22	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149880915	T	T	149880915	1	4	182	0	1	0	0	0	0	0	0	0	15535	870	30	4		4	SV2A	1	149880915	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	97275	149880915	99369706	29	145987											
MTMR11	10903	broad.mit.edu	37	chr1	149905237	149905237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcaagcaaagggtaaacCaggttaggctcagcagacct	11	10	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149905237	A	A	149905237	1	1	182	0	1	0	0	0	0	0	0	0	10034	609	21	2		2	MTMR11	1	149905237	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	24322	149905237	99345384	30	145988											
THEM4	117145	broad.mit.edu	37	chr1	151861595	151861595	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatacatctatgtgaccaTttgaaaatctttattgtagt	5	5	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151861595	C	C	151861595	1	2	182	0	1	0	0	0	0	0	0	0	15981	1508	52	5		5	THEM4	1	151861595	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	1956358	151861595	97389026	31	145989											
FLG	2312	broad.mit.edu	37	chr1	152285802	152285802	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcctctgcttgacccCgggtgtccacgaatggtgtc	10	15	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152285802	A	A	152285802	2	1	182	1	0	0	0	0	0	0	0	1	5979	639	23	1		1	FLG	1	152285802	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	424207	152285802	96964819	32	145990											
TPM3	7170	broad.mit.edu	37	chr1	154155389	154155389	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggaccgtgctccacgGcaaaagggaccttattccgc	11	13	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154155389	A	A	154155389	1	1	182	0	1	0	0	0	0	0	0	0	16531	1218	42	4		4	TPM3	1	154155389	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1869587	154155389	95095232	33	145991											
OR10Z1	128368	broad.mit.edu	37	chr1	158577073	158577073	+	Frame_Shift_Del	DEL	C	-	-													catgacctatactgtagtgaCccccctccttaatcccattg							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158577073	-	-	158577073	7	5	182	1	0	1	0	1	0	0	0	0	11017	507	18	0	847	0	OR10Z1	1	158577073	Frame_Shift_Del	DEL	C	TCGA-55-6712-01A-11D-1855-08	4421684	158577073	90673548	34	145992											
NOS1AP	9722	broad.mit.edu	37	chr1	162124163	162124163	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagggacacttgctacccctCctctcaatgagtgtttgctt	8	12	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162124163	G	G	162124163	1	3	182	0	1	0	0	0	0	0	0	0	10637	870	30	4		4	NOS1AP	1	162124163	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3547090	162124163	87126458	35	145993											
PRRX1	5396	broad.mit.edu	37	chr1	170695400	170695400	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagccaagttccgcaggaatGagagagccatgctagccaat	12	10	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170695400	C	C	170695400	3	2	182	1	0	0	0	0	1	0	0	0	12718	1291	45	4	467	4	PRRX1	1	170695400	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	8571237	170695400	78555221	36	145994											
FMO3	2328	broad.mit.edu	37	chr1	171077331	171077331	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggaattcgggctgtgataTtgccacagaactcagccgca	13	10	1	2	rs72549327		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171077331	C	C	171077331	3	2	182	1	0	0	0	0	1	0	0	0	6014	1493	52	5	610	5	FMO3	1	171077331	Missense_Mutation	SNP	T	TCGA-55-6712-01A-11D-1855-08	381931	171077331	78173290	37	145995											
TNFSF4	7292	broad.mit.edu	37	chr1	173155820	173155820	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgacagacctgaccttcttCagttggaagaggggctcctc	11	11	2	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173155820	T	T	173155820	2	4	182	1	0	0	0	0	0	0	0	1	16433	813	29	4		4	TNFSF4	1	173155820	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2078489	173155820	76094801	38	145996											
TNR	7143	broad.mit.edu	37	chr1	175355363	175355363	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgaaatcgactttggctcGagggggaatccactccacaa	10	10	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175355363	A	A	175355363	4	1	182	1	0	0	0	0	0	1	0	0	16461	1066	37	4	2558	4	TNR	1	175355363	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	2199543	175355363	73895258	39	145997											
C1orf49	84066	broad.mit.edu	37	chr1	178489911	178489911	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatggatggagccagtggaGtcaatggagcaccctgtgct	14	8	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178489911	C	C	178489911	3	2	182	1	0	0	0	0	1	0	0	0	2063	1029	36	4	495	4	C1orf49	1	178489911	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3134548	178489911	70760710	40	145998											
RGS8	85397	broad.mit.edu	37	chr1	182615944	182615944	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggaacctggggtaagagtCtttctccatgaggctgtgta	13	8	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182615944	G	G	182615944	3	3	182	1	0	0	0	0	1	0	0	0	13421	913	32	4	77	4	RGS8	1	182615944	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	4126033	182615944	66634677	41	145999											
SMG7	9887	broad.mit.edu	37	chr1	183502430	183502430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttatagccaagatgagcaGctatgttggacacagttgct	10	8	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183502430	T	T	183502430	3	4	182	1	0	0	0	0	1	0	0	0	14912	962	34	3	1009	3	SMG7	1	183502430	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	886486	183502430	65748191	42	146000											
CDC73	79577	broad.mit.edu	37	chr1	193205262	193205262	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttcatggaaggattgAtaagactctttcacatgaat	8	6	3	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	193205262	G	G	193205262	1	3	182	0	1	0	0	0	0	0	0	0	3115	348	12	5		5	CDC73	1	193205262	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	9702832	193205262	56045359	43	146001											
CFH	3075	broad.mit.edu	37	chr1	196712775	196712775	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaggtagagtattatatttCttttaacattttgggggagt	10	2	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196712775	A	A	196712775	1	1	182	0	1	0	0	0	0	0	0	0	3313	928	32	3		3	CFH	1	196712775	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3507513	196712775	52537846	44	146002											
CAMSAP1L1	23271	broad.mit.edu	37	chr1	200817734	200817734	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaagtagacactggaattCacgttccttcagaagatatt	8	8	2	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200817734	G	G	200817734	3	3	182	1	0	0	0	0	1	0	0	0	2638	826	29	4	1879	4	CAMSAP1L1	1	200817734	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	4104959	200817734	48432887	45	146003											
NAV1	89796	broad.mit.edu	37	chr1	201781101	201781101	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcttgcacttgagcttcAggtaagacctctagctctgg	11	10	3	2	rs148645972		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201781101	G	G	201781101	3	3	182	1	0	0	0	0	1	0	0	0	10277	202	7	5	5182	5	NAV1	1	201781101	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	963367	201781101	47469520	46	146004											
USH2A	7399	broad.mit.edu	37	chr1	216062258	216062258	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattagtgacatttccaggaGttctcaagtatagacggcca	9	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216062258	A	A	216062258	3	1	182	1	0	0	0	0	1	0	0	0	17162	1029	36	4	8003	4	USH2A	1	216062258	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	14281157	216062258	33188363	47	146005											
USH2A	7399	broad.mit.edu	37	chr1	216348701	216348701	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatcagagctggtagagatGactctctcctttccagctga	9	11	3	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216348701	T	T	216348701	4	4	182	1	0	0	0	0	0	1	0	0	17162	1294	45	3	11310	3	USH2A	1	216348701	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	286443	216348701	32901920	48	146006											
NVL	4931	broad.mit.edu	37	chr1	224495875	224495875	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtgttgaagaggtggtttCtctttgctccatctcaggag	13	7	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224495875	T	T	224495875	3	4	182	1	0	0	0	0	1	0	0	0	10875	922	32	4	2209	4	NVL	1	224495875	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	8147174	224495875	24754746	49	146007											
TARBP1	6894	broad.mit.edu	37	chr1	234529176	234529176	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtttgtcgctgatacactGaaggctgccaacaacgagca	10	11	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234529176	A	A	234529176	4	1	182	1	0	0	0	0	0	1	0	0	15674	1299	45	4	385	4	TARBP1	1	234529176	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	10033301	234529176	14721445	50	146008											
EDARADD	128178	broad.mit.edu	37	chr1	236646636	236646636	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatgataagactcgctatAtggggaagggtgtctcaaag	12	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236646636	G	G	236646636	1	3	182	0	1	0	0	0	0	0	0	0	4946	464	16	5		5	EDARADD	1	236646636	3'UTR	SNP	A	TCGA-55-6712-01A-11D-1855-08	2117460	236646636	12603985	51	146009											
RYR2	6262	broad.mit.edu	37	chr1	237617733	237617733	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagcgaaggcttccacagtCgatttgcctatagagtccgt	10	10	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237617733	A	A	237617733	2	1	182	1	0	0	0	0	0	0	0	1	13880	871	31	3		3	RYR2	1	237617733	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	971097	237617733	11632888	52	146010											
FAM36A	116228	broad.mit.edu	37	chr1	245005601	245005601	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacatccatgattatagtAggttatctaattcaaaaagc	6	6	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	245005601	G	G	245005601	1	3	182	0	1	0	0	0	0	0	0	0	5605	435	15	5		5	FAM36A	1	245005601	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	7387868	245005601	4245020	53	146011											
OR2L3	391192	broad.mit.edu	37	chr1	248224188	248224188	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagtcagctctccctcattGacctaaattacatctccacc	3	15	4	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248224188	C	C	248224188	3	2	182	1	0	0	0	0	1	0	0	0	11102	1290	45	4	207	4	OR2L3	1	248224188	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3218587	248224188	1026433	54	146012											
TPO	7173	broad.mit.edu	37	chr2	1418189	1418189	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaattttagaatgagagcGctcgctgtgctgtctgtcac	11	8	2	2	rs61758084		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1418189	A	A	1418189	2	1	182	1	0	0	0	0	0	0	0	1	16534	1074	38	4		4	TPO	2	1418189	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08		1418189	241781184	55	146013											
ADCY3	109	broad.mit.edu	37	chr2	25044432	25044432	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactggttgttgatgttggtGagcgtatccttcatggccag	14	7	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25044432	C	C	25044432	2	2	182	1	0	0	0	0	0	0	0	1	295	1277	45	4		4	ADCY3	2	25044432	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	23626243	25044432	218154941	56	146014											
IFT172	26160	broad.mit.edu	37	chr2	27679584	27679584	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccttctcatctctgacctCggctttgacaaggatccagt	7	14	2	2	rs137969555	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27679584	T	T	27679584	1	4	182	0	1	0	0	0	0	0	0	0	7627	899	31	4		4	IFT172	2	27679584	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	2635152	27679584	215519789	57	146015											
STRN	6801	broad.mit.edu	37	chr2	37096771	37096771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgttatcaaaacaggCtcaatgggatggaaagcaag	12	6	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37096771	A	A	37096771	3	1	182	1	0	0	0	0	1	0	0	0	15447	796	28	3	949	3	STRN	2	37096771	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	9417187	37096771	206102602	58	146016											
HEATR5B	54497	broad.mit.edu	37	chr2	37217795	37217795	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaacgtgtaacttacccatGggtcgcatgaatttaatgca	9	8	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37217795	C	C	37217795	3	2	182	1	0	0	0	0	1	0	0	0	7099	1348	47	4	534	4	HEATR5B	2	37217795	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	121024	37217795	205981578	59	146017											
THADA	63892	broad.mit.edu	37	chr2	43779386	43779386	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttatacagtggactcGcccatacattggaaatgctg	9	10	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43779386	A	A	43779386	4	1	182	1	0	0	0	0	0	1	0	0	15963	1095	38	4	3178	4	THADA	2	43779386	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	6561591	43779386	199419987	60	146018											
SNRPG	6637	broad.mit.edu	37	chr2	70520844	70520844	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggctttcctcacgctccCgctgtaggcccggcgtcttg	11	17	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70520844	A	A	70520844	1	1	182	0	1	0	0	0	0	0	0	0	14983	667	23	1		1	SNRPG	2	70520844	5'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	26741458	70520844	172678529	61	146019											
SMYD5	10322	broad.mit.edu	37	chr2	73448960	73448960	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttgttcactgcaggcgaagGacaaggaccgttggatcaga	13	8	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73448960	C	C	73448960	3	2	182	1	0	0	0	0	1	0	0	0	14939	1174	41	4	566	4	SMYD5	2	73448960	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	2928116	73448960	169750413	62	146020											
PCGF1	84759	broad.mit.edu	37	chr2	74733992	74733992	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctagtttggaggtacttCacaatacaactcttgcagac	8	9	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74733992	T	T	74733992	2	4	182	1	0	0	0	0	0	0	0	1	11668	813	29	4		4	PCGF1	2	74733992	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1285032	74733992	168465381	63	146021											
SFTPB	6439	broad.mit.edu	37	chr2	85890377	85890377	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgctccattctggcccatCctaggtgtctctggctgcaa	10	13	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85890377	T	T	85890377	1	4	182	0	1	0	0	0	0	0	0	0	14304	870	30	4		4	SFTPB	2	85890377	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	11156385	85890377	157308996	64	146022											
PLEKHB2	55041	broad.mit.edu	37	chr2	131960544	131960544	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggcacggtcagcagcccGgaacctgagggttccccatg	14	13	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131960544	A	A	131960544	1	1	182	0	1	0	0	0	0	0	0	0	12160	1131	39	4		4	PLEKHB2	2	131960544	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	46070167	131960544	111238829	65	146023											
FMNL2	114793	broad.mit.edu	37	chr2	153399389	153399389	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccttattagcgagcagaatCctcctgcattggaagagacc	9	11	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153399389	T	T	153399389	1	4	182	0	1	0	0	0	0	0	0	0	6010	870	30	4		4	FMNL2	2	153399389	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	21438845	153399389	89799984	66	146024											
KCNJ3	3760	broad.mit.edu	37	chr2	155555493	155555493	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgagacaagccgctacctctCggacctcttcaccacgctgg	9	17	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155555493	G	G	155555493	3	3	182	1	0	0	0	0	1	0	0	0	8122	893	31	4	208	4	KCNJ3	2	155555493	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2156104	155555493	87643880	67	146025											
KCNJ3	3760	broad.mit.edu	37	chr2	155555552	155555552	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaacctcttcatcttcattCtcacctacaccgtggcctgg	7	15	5	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155555552	A	A	155555552	3	1	182	1	0	0	0	0	1	0	0	0	8122	913	32	3	267	3	KCNJ3	2	155555552	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	59	155555552	87643821	68	146026											
SCN3A	6328	broad.mit.edu	37	chr2	165969338	165969338	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaataacagaaacatatgaAatgtcaaacttgcctctttt	4	7	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165969338	C	C	165969338	1	2	182	0	1	0	0	0	0	0	0	0	14031	29	1	5		5	SCN3A	2	165969338	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	10413786	165969338	77230035	69	146027											
LRP2	4036	broad.mit.edu	37	chr2	170081729	170081729	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttgcttaaaaatgaTtccaaaatccacgtgagatc	5	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170081729	A	A	170081729	1	1	182	0	1	0	0	0	0	0	0	0	9043	1508	52	5		5	LRP2	2	170081729	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	4112391	170081729	73117644	70	146028											
ZAK	51776	broad.mit.edu	37	chr2	174097224	174097224	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacattccatcagcaaaccCtttttttgtttgtttggttt	5	9	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174097224	A	A	174097224	1	1	182	0	1	0	0	0	0	0	0	0	17639	696	24	2		2	ZAK	2	174097224	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	4015495	174097224	69102149	71	146029											
TTN	7273	broad.mit.edu	37	chr2	179468736	179468736	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acattaaattccacgcctttCaatcccactttggttattgg	5	11	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179468736	T	T	179468736	2	4	182	1	0	0	0	0	0	0	0	1	16861	825	29	4		4	TTN	2	179468736	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	5371512	179468736	63730637	72	146030											
TTN	7273	broad.mit.edu	37	chr2	179632674	179632674	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggatgaaatggaaattcgAgtttaccgtatggtgattca	11	4	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179632674	T	T	179632674	1	4	182	0	1	0	0	0	0	0	0	0	16861	319	11	5		5	TTN	2	179632674	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	163938	179632674	63566699	73	146031											
COL3A1	1281	broad.mit.edu	37	chr2	189854905	189854905	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatctaataaattaattGgaataatcttagcttgaaaa	5	5	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189854905	T	T	189854905	1	4	182	0	1	0	0	0	0	0	0	0	3720	1363	47	2		2	COL3A1	2	189854905	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	10222231	189854905	53344468	74	146032											
PLCL1	5334	broad.mit.edu	37	chr2	198948757	198948757	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagactggggaaaaacacGgaaacatttagaaacaatgg	10	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198948757	T	T	198948757	2	4	182	1	0	0	0	0	0	0	0	1	12134	1103	39	1		1	PLCL1	2	198948757	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	9093852	198948757	44250616	75	146033											
FAM126B	285172	broad.mit.edu	37	chr2	201873785	201873785	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacacaatgccccttctgtCaaagccatggatccaattgt	7	12	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201873785	G	G	201873785	3	3	182	1	0	0	0	0	1	0	0	0	5476	825	29	4	1175	4	FAM126B	2	201873785	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2925028	201873785	41325588	76	146034											
ALS2CR12	130540	broad.mit.edu	37	chr2	202153270	202153270	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagagtcagagcaacccaaGaactaaactcattatatgca	7	9	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202153270	C	C	202153270	1	2	182	0	1	0	0	0	0	0	0	0	553	957	33	4		4	ALS2CR12	2	202153270	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	279485	202153270	41046103	77	146035											
ABI2	10152	broad.mit.edu	37	chr2	204267336	204267336	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacagcatgaataggcctgcCtctcgccatactcccccaac	6	17	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204267336	G	G	204267336	2	3	182	1	0	0	0	0	0	0	0	1	89	668	24	4		4	ABI2	2	204267336	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2114066	204267336	38932037	78	146036											
IGFBP2	3485	broad.mit.edu	37	chr2	217528846	217528846	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaccgcagccagccggtgcCtggcgcccctgccccccgcc	12	22	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217528846	A	A	217528846	1	1	182	0	1	0	0	0	0	0	0	0	7649	696	24	2		2	IGFBP2	2	217528846	3'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	13261510	217528846	25670527	79	146037											
RHBDD1	84236	broad.mit.edu	37	chr2	227731886	227731886	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgttgatatttgcatgttCttcattctcttttaggagtt	7	5	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227731886	G	G	227731886	1	3	182	0	1	0	0	0	0	0	0	0	13425	928	32	4		4	RHBDD1	2	227731886	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	10203040	227731886	15467487	80	146038											
UGT1A5	54579	broad.mit.edu	37	chr2	234622615	234622615	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctttccaaagatttcatttCtgcttctcattgttgtaata	4	8	4	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234622615	G	G	234622615	1	3	182	0	1	0	0	0	0	0	0	0	17074	928	32	4		4	UGT1A5	2	234622615	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	6890729	234622615	8576758	81	146039											
CNTN4	152330	broad.mit.edu	37	chr3	3081871	3081871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagcgtgcaccccttctctCcctttgaggttaaagtaggt	10	11	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3081871	A	A	3081871	3	1	182	1	0	0	0	0	1	0	0	0	3675	855	30	3	2380	3	CNTN4	3	3081871	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08		3081871	194940559	82	146040											
IL5RA	3568	broad.mit.edu	37	chr3	3139822	3139822	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataggtacagtactaaccTatagtagagaaaatactgcg	8	6	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3139822	C	C	3139822	3	2	182	1	0	0	0	0	1	0	0	0	7770	1536	53	5	796	5	IL5RA	3	3139822	Missense_Mutation	SNP	T	TCGA-55-6712-01A-11D-1855-08	57951	3139822	194882608	83	146041											
XPC	7508	broad.mit.edu	37	chr3	14200205	14200205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctggaggagggcttgctcCgtttctttctgcctcccttg	12	13	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14200205	A	A	14200205	3	1	182	1	0	0	0	0	1	0	0	0	17568	652	23	1		1	XPC	3	14200205	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	11060383	14200205	183822225	84	146042											
SLC6A6	6533	broad.mit.edu	37	chr3	14508105	14508105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacgctgccgggcgcgggcGcaggcatcaagttctatctg	15	12	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14508105	T	T	14508105	3	4	182	1	0	0	0	0	1	0	0	0	14802	1087	38	3	836	3	SLC6A6	3	14508105	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	307900	14508105	183514325	85	146043											
OSBPL10	114884	broad.mit.edu	37	chr3	31837374	31837374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtgggaaattacttagCcagaaggagcatgttactgt	12	5	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31837374	A	A	31837374	1	1	182	0	1	0	0	0	0	0	0	0	11369	754	26	3		3	OSBPL10	3	31837374	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	17329269	31837374	166185056	86	146044											
SCN10A	6336	broad.mit.edu	37	chr3	38833772	38833772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatgagcaagaagggctcTgggaactacaggtcaatgag	13	7	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38833772	C	C	38833772	1	2	182	0	1	0	0	0	0	0	0	0	14025	1595	55	5		5	SCN10A	3	38833772	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	6996398	38833772	159188658	87	146045											
ZNF167	55888	broad.mit.edu	37	chr3	44619618	44619618	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttttcccccagtgcttcCgttgcagccttaagctgctc	8	15	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44619618	A	A	44619618	1	1	182	0	1	0	0	0	0	0	0	0	17867	667	23	1		1	ZNF167	3	44619618	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	5785846	44619618	153402812	88	146046											
CELSR3	1951	broad.mit.edu	37	chr3	48670422	48670422	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacccacggagatgtgccGggaagtgccaaacaggaagt	13	10	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48670422	T	T	48670422	2	4	182	1	0	0	0	0	0	0	0	1	3253	1115	39	1		1	CELSR3	3	48670422	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	4050804	48670422	149352008	89	146047											
BSN	8927	broad.mit.edu	37	chr3	49692745	49692745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcactggcaccttccaccCggcccccagtgtgcctgaga	10	18	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49692745	A	A	49692745	3	1	182	1	0	0	0	0	1	0	0	0	1539	652	23	1	5774	1	BSN	3	49692745	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1022323	49692745	148329685	90	146048											
UBA7	7318	broad.mit.edu	37	chr3	49845790	49845790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccacaaactccccagccCcactcctcactgccacttgg	4	21	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49845790	A	A	49845790	1	1	182	0	1	0	0	0	0	0	0	0	16959	638	22	2		2	UBA7	3	49845790	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	153045	49845790	148176640	91	146049											
SEMA3B	7869	broad.mit.edu	37	chr3	50312960	50312960	+	Intron	DEL	G	-	-													actgcccggggctgaaagaaGggctcacagaagatcggatg							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50312960	-	-	50312960	6	5	182	0	1	1	0	1	0	0	0	0	14138	1015	35	0		0	SEMA3B	3	50312960	Intron	DEL	G	TCGA-55-6712-01A-11D-1855-08	467170	50312960	147709470	92	146050											
ADAMTS9	56999	broad.mit.edu	37	chr3	64507906	64507906	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgcattttccacagtaacCaccgcatttccctacgactc	5	15	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64507906	T	T	64507906	3	4	182	1	0	0	0	0	1	0	0	0	273	594	21	4	62	4	ADAMTS9	3	64507906	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	14194946	64507906	133514524	93	146051											
UBA3	9039	broad.mit.edu	37	chr3	69106387	69106387	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaagcaaaataaactaagtGatggccttttcttcctcacc	6	10	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69106387	C	C	69106387	1	2	182	0	1	0	0	0	0	0	0	0	16955	1305	45	4		4	UBA3	3	69106387	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	4598481	69106387	128916043	94	146052											
C3orf26	84319	broad.mit.edu	37	chr3	99890704	99890704	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgatgacagcattcagaggAgacggcaaagttataaaatt	10	6	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99890704	G	G	99890704	2	3	182	1	0	0	0	0	0	0	0	1	2240	291	11	5		5	C3orf26	3	99890704	Silent	SNP	A	TCGA-55-6712-01A-11D-1855-08	30784317	99890704	98131726	95	146053											
SLC9A10	285335	broad.mit.edu	37	chr3	111901274	111901274	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttgtatcatcattaTttttatttcttcccaacttt	1	8	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111901274	C	C	111901274	1	2	182	0	1	0	0	0	0	0	0	0	14824	1508	52	5		5	SLC9A10	3	111901274	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	12010570	111901274	86121156	96	146054											
SIDT1	54847	broad.mit.edu	37	chr3	113285207	113285207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgtgtgtgtgtGtgtgtttgcatgtgtgcatg	18	2	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113285207	T	T	113285207	1	4	182	0	1	0	0	0	0	0	0	0	14415	1392	48	3		3	SIDT1	3	113285207	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1383933	113285207	84737223	97	146055											
DRD3	1814	broad.mit.edu	37	chr3	113850095	113850095	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaacttctaagctgagcttGggcgctatggtgggactcag	14	9	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113850095	T	T	113850095	2	4	182	1	0	0	0	0	0	0	0	1	4798	1335	47	2		2	DRD3	3	113850095	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	564888	113850095	84172335	98	146056											
CEP63	80254	broad.mit.edu	37	chr3	134280257	134280257	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccttggttcaatagctacCagatttttggaagaggagga	11	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134280257	A	A	134280257	2	1	182	1	0	0	0	0	0	0	0	1	3287	581	21	2		2	CEP63	3	134280257	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	20430162	134280257	63742173	99	146057											
ATP1B3	483	broad.mit.edu	37	chr3	141595789	141595789	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggcgtccggggccggcctCggtcccgggggcgccgggcg	22	15	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141595789	T	T	141595789	1	4	182	0	1	0	0	0	0	0	0	0	1138	899	31	4		4	ATP1B3	3	141595789	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	7315532	141595789	56426641	100	146058											
HLTF	6596	broad.mit.edu	37	chr3	148757347	148757347	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatccttttactgaaagtGaaaaacactgtggaacttac	6	7	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148757347	A	A	148757347	1	1	182	0	1	0	0	0	0	0	0	0	7282	1305	45	4		4	HLTF	3	148757347	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	7161558	148757347	49265083	101	146059											
MME	4311	broad.mit.edu	37	chr3	154859990	154859990	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaagctttgcagcctcatCttttctgttgctgggcggtg	12	10	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154859990	G	G	154859990	1	3	182	0	1	0	0	0	0	0	0	0	9738	928	32	4		4	MME	3	154859990	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	6102643	154859990	43162440	102	146060											
AP2M1	1173	broad.mit.edu	37	chr3	183899735	183899735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacatcatccttcccttccGggtgatcccgctagtgcgag	11	14	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183899735	T	T	183899735	3	4	182	1	0	0	0	0	1	0	0	0	744	1116	39	1	890	1	AP2M1	3	183899735	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	29039745	183899735	14122695	103	146061											
EIF4G1	1981	broad.mit.edu	37	chr3	184034358	184034358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggtgaggtaaacactcCagctggtccttgcctttctc	10	12	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184034358	A	A	184034358	1	1	182	0	1	0	0	0	0	0	0	0	5078	609	21	2		2	EIF4G1	3	184034358	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	134623	184034358	13988072	104	146062											
ATP13A5	344905	broad.mit.edu	37	chr3	193081170	193081170	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatatatctttgaaattcgTcctggaaaagacaatccagt	6	8	2	2	rs150024258		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193081170	A	A	193081170	3	1	182	1	0	0	0	0	1	0	0	0	1131	1681	58	5	3527	5	ATP13A5	3	193081170	Missense_Mutation	SNP	T	TCGA-55-6712-01A-11D-1855-08	9046812	193081170	4941260	105	146063											
CRIPAK	285464	broad.mit.edu	37	chr4	1389322	1389322	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgccgatgtggagtgccCgcctgctcacacgtgcccat	11	15	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1389322	A	A	1389322	2	1	182	1	0	0	0	0	0	0	0	1	3909	639	23	1		1	CRIPAK	4	1389322	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08		1389322	189764954	106	146064											
GRK4	2868	broad.mit.edu	37	chr4	2965875	2965875	+	Intron	DEL	C	-	-													tgcgcggcaggcgcccccgaCcccccccccagagaaccccg							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2965875	-	-	2965875	6	5	182	0	1	1	0	1	0	0	0	0	6857	522	18	0		0	GRK4	4	2965875	Intron	DEL	C	TCGA-55-6712-01A-11D-1855-08	1576553	2965875	188188401	107	146065											
HTT	3064	broad.mit.edu	37	chr4	3148843	3148843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatgcataaacacatgcaGttggcagctgttctgtgctg	10	8	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3148843	T	T	3148843	1	4	182	0	1	0	0	0	0	0	0	0	7527	1044	36	3		3	HTT	4	3148843	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	182968	3148843	188005433	108	146066											
TXK	7294	broad.mit.edu	37	chr4	48081936	48081936	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaccatacttaccaaatccCtatgaatatagccattcctc	3	14	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48081936	G	G	48081936	3	3	182	1	0	0	0	0	1	0	0	0	16912	681	24	4	437	4	TXK	4	48081936	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	44933093	48081936	143072340	109	146067											
PDGFRA	5156	broad.mit.edu	37	chr4	55146502	55146502	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctatgttattttatcttttGaaaacaatggtgactacatg	7	5	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55146502	C	C	55146502	3	2	182	1	0	0	0	0	1	0	0	0	11755	1291	45	4	2234	4	PDGFRA	4	55146502	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	7064566	55146502	136007774	110	146068											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68929020	68929020	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaccgcaccaactgatggCggaaacttaagtatttctta	9	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68929020	T	T	68929020	1	4	182	0	1	0	0	0	0	0	0	0	16366	783	27	4		4	TMPRSS11F	4	68929020	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	13782518	68929020	122225256	111	146069											
UGT2B15	7366	broad.mit.edu	37	chr4	69536161	69536161	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattgacaagagtagaagccGaagatgtcaacacagtcacc	9	10	2	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69536161	T	T	69536161	4	4	182	1	0	0	0	0	0	1	0	0	17084	1059	37	3	3057	3	UGT2B15	4	69536161	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	607141	69536161	121618115	112	146070											
ODAM	54959	broad.mit.edu	37	chr4	71066318	71066318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacagtatgaggagcaGgtactgcaaatgttttattt	10	6	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71066318	T	T	71066318	3	4	182	1	0	0	0	0	1	0	0	0	10919	1014	35	2	550	2	ODAM	4	71066318	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	1530157	71066318	120087958	113	146071											
HNRPDL	9987	broad.mit.edu	37	chr4	83347179	83347179	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctactgttttcctgtactCttatacacacctgttttctc	3	12	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83347179	G	G	83347179	1	3	182	0	1	0	0	0	0	0	0	0	7343	928	32	4		4	HNRPDL	4	83347179	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	12280861	83347179	107807097	114	146072											
WDFY3	23001	broad.mit.edu	37	chr4	85687162	85687162	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtcaaaacccagtgtcttCaccagttcttcacaagctct	5	14	6	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85687162	T	T	85687162	2	4	182	1	0	0	0	0	0	0	0	1	17397	813	29	4		4	WDFY3	4	85687162	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2339983	85687162	105467114	115	146073											
ARHGAP24	83478	broad.mit.edu	37	chr4	86893267	86893267	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaccagttattccttatgcGaagtatgaagattttttgtc	8	6	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86893267	C	C	86893267	2	2	182	1	0	0	0	0	0	0	0	1	875	1045	37	4		4	ARHGAP24	4	86893267	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	1206105	86893267	104261009	116	146074											
KLHL8	57563	broad.mit.edu	37	chr4	88116721	88116721	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctcttttaatagagctctCttctcaaacatgccatttat	3	11	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88116721	T	T	88116721	1	4	182	0	1	0	0	0	0	0	0	0	8466	928	32	4		4	KLHL8	4	88116721	5'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	1223454	88116721	103037555	117	146075											
ADH5	128	broad.mit.edu	37	chr4	100009805	100009805	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgccatgcactccctccCttggactcagggccctccgc	8	20	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100009805	T	T	100009805	1	4	182	0	1	0	0	0	0	0	0	0	311	696	24	4		4	ADH5	4	100009805	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	11893084	100009805	91144471	118	146076											
MTTP	4547	broad.mit.edu	37	chr4	100504498	100504498	+	Intron	DEL	T	-	-													atgaagacagatataggaagTtttttttaacagctttcttt							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100504498	-	-	100504498	6	5	182	0	1	1	0	1	0	0	0	0	10058	1740	60	0		0	MTTP	4	100504498	Intron	DEL	T	TCGA-55-6712-01A-11D-1855-08	494693	100504498	90649778	119	146077											
DAPP1	27071	broad.mit.edu	37	chr4	100774382	100774382	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcttcattcaggcactctGatggttctaaaacatcccta	5	12	5	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100774382	A	A	100774382	2	1	182	1	0	0	0	0	0	0	0	1	4272	1277	45	4		4	DAPP1	4	100774382	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	269884	100774382	90379894	120	146078											
CENPE	1062	broad.mit.edu	37	chr4	104064548	104064548	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgaacaatttttagctcctCttgtttttctaggtccttta	6	8	2	1	rs146277781	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104064548	G	G	104064548	3	3	182	1	0	0	0	0	1	0	0	0	3260	922	32	4	3008	4	CENPE	4	104064548	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	3290166	104064548	87089728	121	146079											
TRPC3	7222	broad.mit.edu	37	chr4	122803410	122803410	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttagaggcatccaaactaTaacctgggattggattttta	8	7	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122803410	C	C	122803410	1	2	182	0	1	0	0	0	0	0	0	0	16704	1421	49	5		5	TRPC3	4	122803410	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	18738862	122803410	68350866	122	146080											
FAT4	79633	broad.mit.edu	37	chr4	126372722	126372722	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgtcagtgaaggagaagtCatggaaaacaaacggccagg	13	7	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126372722	G	G	126372722	2	3	182	1	0	0	0	0	0	0	0	1	5749	813	29	4		4	FAT4	4	126372722	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	3569312	126372722	64781554	123	146081											
NPY2R	4887	broad.mit.edu	37	chr4	156135229	156135229	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttatagatagtaccaagctGattgaggtacaagttgttct	9	6	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156135229	A	A	156135229	2	1	182	1	0	0	0	0	0	0	0	1	10704	1277	45	4		4	NPY2R	4	156135229	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	29762507	156135229	35019047	124	146082											
GRIA2	2891	broad.mit.edu	37	chr4	158262697	158262697	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccctcccatagtcaattCcaaggtactatgtgaaagca	6	11	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262697	A	A	158262697	1	1	182	0	1	0	0	0	0	0	0	0	6834	870	30	3		3	GRIA2	4	158262697	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	2127468	158262697	32891579	125	146083											
C4orf46	201725	broad.mit.edu	37	chr4	159590811	159590811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttctttcaagaggtccCgccacgttttaaggaaacgt	9	11	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159590811	A	A	159590811	3	1	182	1	0	0	0	0	1	0	0	0	2297	652	23	1	49	1	C4orf46	4	159590811	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1328114	159590811	31563465	126	146084											
PALLD	23022	broad.mit.edu	37	chr4	169432721	169432721	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacatgcaggaagaaagcaaGaatactgacttcttcccggg	11	9	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169432721	T	T	169432721	3	4	182	1	0	0	0	0	1	0	0	0	11501	933	33	3	68	3	PALLD	4	169432721	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	9841910	169432721	21721555	127	146085											
SORBS2	8470	broad.mit.edu	37	chr4	186515027	186515027	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctcaaatttagaagataaGaagaatacttacggttcccc	7	8	1	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186515027	A	A	186515027	1	1	182	0	1	0	0	0	0	0	0	0	15042	957	33	4		4	SORBS2	4	186515027	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	17082306	186515027	4639249	128	146086											
CYP4V2	285440	broad.mit.edu	37	chr4	187122497	187122497	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacaccttcatgtttgagGtattgtatattgttaggttc	9	5	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187122497	T	T	187122497	5	4	182	1	0	0	0	0	0	0	1	0	4225	1275	44	3	1014	3	CYP4V2	4	187122497	Splice_Site	SNP	G	TCGA-55-6712-01A-11D-1855-08	607470	187122497	4031779	129	146087											
ZNF622	90441	broad.mit.edu	37	chr5	16465058	16465059	+	Intron	DEL	AC	-	-													ttttacttaaaagctctcaaAcacacacacacacccatctc							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16465059	-	-	16465058	6	5	182	0	1	1	0	1	0	0	0	0	18173	58	2	0		0	ZNF622	5	16465058	Intron	DEL	AC	TCGA-55-6712-01A-11D-1855-08		16465058	164450202	130	146088											
CDH10	1008	broad.mit.edu	37	chr5	24535749	24535749	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttcttattctcccatggtCtttctactgataaaggtcat	6	9	5	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24535749	G	G	24535749	1	3	182	0	1	0	0	0	0	0	0	0	3126	928	32	4		4	CDH10	5	24535749	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	8070691	24535749	156379511	131	146089											
PRLR	5618	broad.mit.edu	37	chr5	35068404	35068404	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgctataaaataattcatGagattggctaaatgactcat	6	6	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35068404	C	C	35068404	1	2	182	0	1	0	0	0	0	0	0	0	12637	1305	45	4		4	PRLR	5	35068404	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	10532655	35068404	145846856	132	146090											
C6	729	broad.mit.edu	37	chr5	41160464	41160464	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaccaagtccacgatgggGgcaagctaggagaaaatggg	14	8	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41160464	T	T	41160464	2	4	182	1	0	0	0	0	0	0	0	1	2338	1219	43	2		2	C6	5	41160464	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	6092060	41160464	139754796	133	146091											
PLCXD3	345557	broad.mit.edu	37	chr5	41475572	41475572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccgtatggtccctgttaGttcctgtgaattcctgcaaa	9	10	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41475572	T	T	41475572	1	4	182	0	1	0	0	0	0	0	0	0	12138	1044	36	3		3	PLCXD3	5	41475572	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	315108	41475572	139439688	134	146092											
MGC42105	167359	broad.mit.edu	37	chr5	43232305	43232305	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcattgacgtctttgagaaCcatgtcaccacggtaaaaca	8	10	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43232305	T	T	43232305	1	4	182	0	1	0	0	0	0	0	0	0	9645	522	18	4		4	MGC42105	5	43232305	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1756733	43232305	137682955	135	146093											
DEPDC1B	55789	broad.mit.edu	37	chr5	59901643	59901643	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaggagaaggcagcaaatCtgaaatgcttcaactgccac	11	9	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59901643	G	G	59901643	3	3	182	1	0	0	0	0	1	0	0	0	4480	912	32	4	666	4	DEPDC1B	5	59901643	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	16669338	59901643	121013617	136	146094											
NLN	57486	broad.mit.edu	37	chr5	65088485	65088485	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcagatttgtgcacaggtGagttttttttttcccccagt	8	9	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65088485	T	T	65088485	1	4	182	0	1	0	0	0	0	0	0	0	10562	1305	45	3		3	NLN	5	65088485	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	5186842	65088485	115826775	137	146095											
CMYA5	202333	broad.mit.edu	37	chr5	79026143	79026143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctacccatagctattaccCctgaacctgaagattctaat	4	14	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79026143	A	A	79026143	3	1	182	1	0	0	0	0	1	0	0	0	3622	623	22	2	1561	2	CMYA5	5	79026143	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	13937658	79026143	101889117	138	146096											
ATG10	83734	broad.mit.edu	37	chr5	81460021	81460021	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatctggaattacttaatgCtaatgttttctggttttact	6	6	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81460021	G	G	81460021	1	3	182	0	1	0	0	0	0	0	0	0	1093	812	28	4		4	ATG10	5	81460021	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	2433878	81460021	99455239	139	146097											
CAST	831	broad.mit.edu	37	chr5	96100940	96100940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcagagtgacaaagacCtcgatgatgccttggataaa	10	8	1	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96100940	A	A	96100940	3	1	182	1	0	0	0	0	1	0	0	0	2710	681	24	2	2174	2	CAST	5	96100940	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	14640919	96100940	84814320	140	146098											
PPIP5K2	23262	broad.mit.edu	37	chr5	102522193	102522193	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacacccatgcacacacccAtgagcagtatttctcaaagg	6	14	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102522193	T	T	102522193	1	4	182	0	1	0	0	0	0	0	0	0	12434	232	8	5		5	PPIP5K2	5	102522193	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	6421253	102522193	78393067	141	146099											
EPB41L4A	64097	broad.mit.edu	37	chr5	111519622	111519622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaacaatgaaataatcctaGttgaactaaaacactttaga	4	6	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111519622	A	A	111519622	1	1	182	0	1	0	0	0	0	0	0	0	5197	1044	36	4		4	EPB41L4A	5	111519622	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	8997429	111519622	69395638	142	146100											
DCP2	167227	broad.mit.edu	37	chr5	112337369	112337369	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacccactgtggaaaaattGaggtaaagaaatacattcat	7	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112337369	A	A	112337369	2	1	182	1	0	0	0	0	0	0	0	1	4333	1281	45	4		4	DCP2	5	112337369	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	817747	112337369	68577891	143	146101											
SEMA6A	57556	broad.mit.edu	37	chr5	115813918	115813918	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctcggccccaccctcacatCccacttcccagcccacaagg	5	22	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115813918	T	T	115813918	1	4	182	0	1	0	0	0	0	0	0	0	14152	870	30	4		4	SEMA6A	5	115813918	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3476549	115813918	65101342	144	146102											
IRF1	3659	broad.mit.edu	37	chr5	131822793	131822793	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccttccacgtcttgggatCtggctccttttcccctgctt	9	15	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131822793	G	G	131822793	3	3	182	1	0	0	0	0	1	0	0	0	7897	913	32	4	788	4	IRF1	5	131822793	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	16008875	131822793	49092467	145	146103											
MATR3	9782	broad.mit.edu	37	chr5	138661298	138661298	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgagaacaaggacgactAtacaatcccagatgagtata	9	7	0	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138661298	G	G	138661298	3	3	182	1	0	0	0	0	1	0	0	0	9429	449	16	5	2364	5	MATR3	5	138661298	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	6838505	138661298	42253962	146	146104											
PCDHB2	56133	broad.mit.edu	37	chr5	140476411	140476411	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgctcccggaggcggcAccggcccaggcccaggccga	15	18	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140476411	C	C	140476411	2	2	182	1	0	0	0	0	0	0	0	1	11636	146	6	5		5	PCDHB2	5	140476411	Silent	SNP	A	TCGA-55-6712-01A-11D-1855-08	1815113	140476411	40438849	147	146105											
PCDHB4	56131	broad.mit.edu	37	chr5	140501869	140501869	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	accgggaagagctctgtggtCctattgaaccgtgtgtactg	13	9	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140501869	G	G	140501869	3	3	182	1	0	0	0	0	1	0	0	0	11638	855	30	4	291	4	PCDHB4	5	140501869	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	25458	140501869	40413391	148	146106											
PCDHB11	56125	broad.mit.edu	37	chr5	140579307	140579307	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcagagacgcgttccgcaGagctgaagcctttcttcaag	11	11	3	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140579307	C	C	140579307	1	2	182	0	1	0	0	0	0	0	0	0	11630	957	33	4		4	PCDHB11	5	140579307	5'Flank	SNP	G	TCGA-55-6712-01A-11D-1855-08	77438	140579307	40335953	149	146107											
PCDHB12	56124	broad.mit.edu	37	chr5	140590315	140590315	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcaaggccacggagccCgggctattcggcgtgtgggc	16	13	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140590315	A	A	140590315	2	1	182	1	0	0	0	0	0	0	0	1	11631	639	23	1		1	PCDHB12	5	140590315	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	11008	140590315	40324945	150	146108											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736874	140736874	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggccgctgtctcctgcGtcttcctggcttttgtcacg	11	14	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140736874	A	A	140736874	3	1	182	1	0	0	0	0	1	0	0	0	11650	1145	40	4	2109	4	PCDHGA4	5	140736874	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	146559	140736874	40178386	151	146109											
PCDHGB2	56103	broad.mit.edu	37	chr5	140740398	140740398	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acccaaatccgaatcaaagtCacggatgccaacgataaccc	6	14	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140740398	T	T	140740398	2	4	182	1	0	0	0	0	0	0	0	1	11657	813	29	4		4	PCDHGB2	5	140740398	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	3524	140740398	40174862	152	146110											
PCDHGC4	56098	broad.mit.edu	37	chr5	140864841	140864841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgggcagatccgctaccCggtcccagaggagtcacagg	14	12	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140864841	A	A	140864841	3	1	182	1	0	0	0	0	1	0	0	0	11664	652	23	1	103	1	PCDHGC4	5	140864841	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	124443	140864841	40050419	153	146111											
PCDH12	51294	broad.mit.edu	37	chr5	141331052	141331052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtgggggctacgtgctGcttacctgctgcctcctggc	14	14	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141331052	T	T	141331052	1	4	182	0	1	0	0	0	0	0	0	0	11604	1334	46	3		3	PCDH12	5	141331052	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	466211	141331052	39584208	154	146112											
CCDC69	26112	broad.mit.edu	37	chr5	150584997	150584997	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggacctaattcatggggctCtggtctgggtggctgttctg	16	8	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150584997	G	G	150584997	3	3	182	1	0	0	0	0	1	0	0	0	2869	922	32	4	834	4	CCDC69	5	150584997	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	9253945	150584997	30330263	155	146113											
CYFIP2	26999	broad.mit.edu	37	chr5	156731413	156731413	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcacccatggagcctgggcTtaccctctcaccttcttctt	7	17	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156731413	A	A	156731413	1	1	182	0	1	0	0	0	0	0	0	0	4171	1624	56	5		5	CYFIP2	5	156731413	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	6146416	156731413	24183847	156	146114											
ODZ2	57451	broad.mit.edu	37	chr5	167673884	167673884	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtccacacacacctccatCggctacatccgtaatattta	4	14	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167673884	T	T	167673884	2	4	182	1	0	0	0	0	0	0	0	1	10930	874	31	4		4	ODZ2	5	167673884	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	10942471	167673884	13241376	157	146115											
SLIT3	6586	broad.mit.edu	37	chr5	168189533	168189533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagggagttcacgccgagGttggacttacaggtcggtga	16	7	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168189533	T	T	168189533	1	4	182	0	1	0	0	0	0	0	0	0	14855	1276	44	3		3	SLIT3	5	168189533	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	515649	168189533	12725727	158	146116											
RMND5B	64777	broad.mit.edu	37	chr5	177569838	177569838	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcatcaccaggccctgtctCtcctccttcgtcagaacttc	6	18	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177569838	G	G	177569838	1	3	182	0	1	0	0	0	0	0	0	0	13509	928	32	4		4	RMND5B	5	177569838	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	9380305	177569838	3345422	159	146117											
FLT4	2324	broad.mit.edu	37	chr5	180057164	180057164	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctcctggccagacaggcGgccgcctttcccaggggtgg	15	14	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180057164	A	A	180057164	1	1	182	0	1	0	0	0	0	0	0	0	6002	1131	39	4		4	FLT4	5	180057164	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	2487326	180057164	858096	160	146118											
HIST1H1D	3007	broad.mit.edu	37	chr6	26234663	26234663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggccactttcttggtccCagcagcggttgctggcttct	11	13	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26234663	A	A	26234663	3	1	182	1	0	0	0	0	1	0	0	0	7192	594	21	2	170	2	HIST1H1D	6	26234663	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08		26234663	144880404	161	146119											
OR2H2	7932	broad.mit.edu	37	chr6	29556336	29556336	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgccagtgtcttcatcttGgttgtgcctctcagcctcat	9	12	5	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29556336	C	C	29556336	3	2	182	1	0	0	0	0	1	0	0	0	11096	1339	47	4	617	4	OR2H2	6	29556336	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3321673	29556336	141558731	162	146120											
TRIM31	11074	broad.mit.edu	37	chr6	30080126	30080126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggcctcactgaactcctGggctgatgggggaacaggga	16	10	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30080126	T	T	30080126	1	4	182	0	1	0	0	0	0	0	0	0	16629	1363	47	2		2	TRIM31	6	30080126	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	523790	30080126	141034941	163	146121											
GNL1	2794	broad.mit.edu	37	chr6	30521020	30521020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcatctctcccaccaccCttaggcccaagaccaggtgc	6	19	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30521020	A	A	30521020	1	1	182	0	1	0	0	0	0	0	0	0	6599	696	24	2		2	GNL1	6	30521020	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	440894	30521020	140594047	164	146122											
C6orf136	221545	broad.mit.edu	37	chr6	30619167	30619167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactggaccctgcaagccCggtggcggcttgtggggctg	17	11	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30619167	A	A	30619167	2	1	182	1	0	0	0	0	0	0	0	1	2354	643	23	1		1	C6orf136	6	30619167	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	98147	30619167	140495900	165	146123											
HLA-B	3106	broad.mit.edu	37	chr6	31322453	31322453	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttttccacctgtgggaagAaaatgtcctgtgagggcact	11	10	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31322453	C	C	31322453	1	2	182	0	1	0	0	0	0	0	0	0	7263	261	9	5		5	HLA-B	6	31322453	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	703286	31322453	139792614	166	146124											
HLA-B	3106	broad.mit.edu	37	chr6	31322830	31322830	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacacttctacctggggcttGaaacccccagtgggacaaga	10	12	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31322830	C	C	31322830	1	2	182	0	1	0	0	0	0	0	0	0	7263	1305	45	4		4	HLA-B	6	31322830	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	377	31322830	139792237	167	146125											
TFEB	7942	broad.mit.edu	37	chr6	41704008	41704008	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctcctcttccccgcccCtttttccctgtctcctcccc	2	23	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41704008	A	A	41704008	1	1	182	0	1	0	0	0	0	0	0	0	15924	696	24	2		2	TFEB	6	41704008	5'Flank	SNP	C	TCGA-55-6712-01A-11D-1855-08	10381178	41704008	129411059	168	146126											
LRRC1	55227	broad.mit.edu	37	chr6	53761995	53761995	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgctaaggtacccagttgTtaacagatgaattcagtttc	8	8	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53761995	A	A	53761995	1	1	182	0	1	0	0	0	0	0	0	0	9053	1740	60	5		5	LRRC1	6	53761995	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	12057987	53761995	117353072	169	146127											
EYS	346007	broad.mit.edu	37	chr6	66204732	66204732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcttgctccaagcttcaCtaagacatttaccatgacca	5	12	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66204732	A	A	66204732	3	1	182	1	0	0	0	0	1	0	0	0	5375	565	20	3	8984	3	EYS	6	66204732	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	12442737	66204732	104910335	170	146128											
BAI3	577	broad.mit.edu	37	chr6	69703537	69703537	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttacagttttcaaatcctCccaagcattgcaaggctatt	5	10	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69703537	A	A	69703537	1	1	182	0	1	0	0	0	0	0	0	0	1305	870	30	3		3	BAI3	6	69703537	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3498805	69703537	101411530	171	146129											
COL9A1	1297	broad.mit.edu	37	chr6	70944631	70944631	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctctcaagccaggttcccCaggattacctgcctggaaca	8	16	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70944631	G	G	70944631	3	3	182	1	0	0	0	0	1	0	0	0	3739	594	21	4	660	4	COL9A1	6	70944631	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1241094	70944631	100170436	172	146130											
ELOVL4	6785	broad.mit.edu	37	chr6	80636031	80636031	+	Nonsense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagccacacaaacaggagAtaaagagtgcttatacttag	8	10	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80636031	C	C	80636031	4	2	182	1	0	0	0	0	0	1	0	0	5118	340	12	5	796	5	ELOVL4	6	80636031	Nonsense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	9691400	80636031	90479036	173	146131											
CASP8AP2	9994	broad.mit.edu	37	chr6	90578701	90578701	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcatcattaaaggcaaccCcagggattaaggattcatca	7	11	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90578701	G	G	90578701	3	3	182	1	0	0	0	0	1	0	0	0	2704	623	22	4	5718	4	CASP8AP2	6	90578701	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	9942670	90578701	80536366	174	146132											
FHL5	9457	broad.mit.edu	37	chr6	97053872	97053872	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagggacaaagcctttgatCtccaaagagagtggcaatta	10	7	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97053872	T	T	97053872	2	4	182	1	0	0	0	0	0	0	0	1	5938	903	32	4		4	FHL5	6	97053872	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	6475171	97053872	74061195	175	146133											
LAMA4	3910	broad.mit.edu	37	chr6	112522851	112522851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttcgttacaaatgcacCgaacagctccatttttccta	4	11	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112522851	A	A	112522851	3	1	182	1	0	0	0	0	1	0	0	0	8680	652	23	1	5150	1	LAMA4	6	112522851	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	15468979	112522851	58592216	176	146134											
ROS1	6098	broad.mit.edu	37	chr6	117647511	117647511	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccatgtgcaaacactactGcaggatccattaaatgtcat	6	10	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117647511	A	A	117647511	2	1	182	1	0	0	0	0	0	0	0	1	13642	1311	46	4		4	ROS1	6	117647511	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	5124660	117647511	53467556	177	146135											
NKAIN2	154215	broad.mit.edu	37	chr6	125139557	125139557	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcataggtggctttgactCttatggctatcaagggcctc	10	9	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125139557	G	G	125139557	3	3	182	1	0	0	0	0	1	0	0	0	10531	913	32	4	582	4	NKAIN2	6	125139557	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	7492046	125139557	45975510	178	146136											
LAMA2	3908	broad.mit.edu	37	chr6	129724953	129724953	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgacattccttttttgaAtcatcccaccagaatccttg	4	14	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129724953	G	G	129724953	1	3	182	0	1	0	0	0	0	0	0	0	8678	116	4	5		5	LAMA2	6	129724953	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	4585396	129724953	41390114	179	146137											
ENPP3	5169	broad.mit.edu	37	chr6	131973770	131973770	+	Silent	SNP	G	A	A													tcagatgactgtttgcagagGaaagattgctgtgctgacta							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131973770	A	A	131973770	2	1	182	1	0	0	0	0	0	0	0	1	5173	1165	41	4		4	ENPP3	6	131973770	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	2248817	131973770	39141297	180	146138	626	2									
ENPP3	5169	broad.mit.edu	37	chr6	131973774	131973774	+	Missense_Mutation	SNP	G	A	A													atgactgtttgcagaggaaaGattgctgtgctgactataag							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131973774	A	A	131973774	3	1	182	1	0	0	0	0	1	0	0	0	5173	942	33	4	384	4	ENPP3	6	131973774	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	4	131973774	39141293	181	146139	626	2									
MAP3K5	4217	broad.mit.edu	37	chr6	137017054	137017054	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggttacacaataatatgTtaacgcattctggaagggaa	10	6	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137017054	C	C	137017054	1	2	182	0	1	0	0	0	0	0	0	0	9345	1740	60	5		5	MAP3K5	6	137017054	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	5043280	137017054	34098013	182	146140											
UTRN	7402	broad.mit.edu	37	chr6	145156988	145156988	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccccagtgagccagccgcaGagcccagctcagatcctgaa	10	16	1	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145156988	C	C	145156988	3	2	182	1	0	0	0	0	1	0	0	0	17230	933	33	4	10012	4	UTRN	6	145156988	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	8139934	145156988	25958079	183	146141											
C6orf211	79624	broad.mit.edu	37	chr6	151789867	151789867	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtggatgtccaagtgtggGgctgactgggaagagtatat	16	4	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151789867	A	A	151789867	2	1	182	1	0	0	0	0	0	0	0	1	2377	1219	43	4		4	C6orf211	6	151789867	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	6632879	151789867	19325200	184	146142											
SYNE1	23345	broad.mit.edu	37	chr6	152665455	152665455	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacatgaccagtacatctaAatggattttccccccaagat	5	11	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152665455	C	C	152665455	1	2	182	0	1	0	0	0	0	0	0	0	15564	29	1	5		5	SYNE1	6	152665455	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	875588	152665455	18449612	185	146143											
SYNE1	23345	broad.mit.edu	37	chr6	152792773	152792773	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccactgactctctcctccCgtacttaatgatccaagact	4	16	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152792773	A	A	152792773	3	1	182	1	0	0	0	0	1	0	0	0	15564	652	23	1	25399	1	SYNE1	6	152792773	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	127318	152792773	18322294	186	146144											
IGF2R	3482	broad.mit.edu	37	chr6	160517360	160517360	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggacgtgggatgaagtctCttctgcctgattttaagtct	12	7	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160517360	T	T	160517360	1	4	182	0	1	0	0	0	0	0	0	0	7646	928	32	4		4	IGF2R	6	160517360	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	7724587	160517360	10597707	187	146145											
TTYH3	80727	broad.mit.edu	37	chr7	2697955	2697955	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggaggaggaggccgctcCagggccgcggcaggcgcacg	21	13	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2697955	T	T	2697955	3	4	182	1	0	0	0	0	1	0	0	0	16867	594	21	4	1332	4	TTYH3	7	2697955	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08		2697955	156440708	188	146146											
SDK1	221935	broad.mit.edu	37	chr7	4273011	4273011	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggctgtgaatgaggcGggctacggggagcccagcaa	19	8	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4273011	A	A	4273011	2	1	182	1	0	0	0	0	0	0	0	1	14081	1103	39	4		4	SDK1	7	4273011	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	1575056	4273011	154865652	189	146147											
C7orf26	79034	broad.mit.edu	37	chr7	6639662	6639662	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaaaaagaagcccccCttatccaatggccatgtcag	8	11	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6639662	A	A	6639662	2	1	182	1	0	0	0	0	0	0	0	1	2406	668	24	2		2	C7orf26	7	6639662	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2366651	6639662	152499001	190	146148											
GLCCI1	113263	broad.mit.edu	37	chr7	8062112	8062112	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttatatatatattttttaaaGacacctagctgttgggcaga	7	5	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8062112	A	A	8062112	5	1	182	1	0	0	0	0	0	0	1	0	6495	956	33	4	619	4	GLCCI1	7	8062112	Splice_Site	SNP	G	TCGA-55-6712-01A-11D-1855-08	1422450	8062112	151076551	191	146149											
BZW2	28969	broad.mit.edu	37	chr7	16736596	16736596	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcttccagaaacagcagtGattggtcttctgtggacatg	11	8	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16736596	A	A	16736596	2	1	182	1	0	0	0	0	0	0	0	1	1589	1277	45	4		4	BZW2	7	16736596	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	8674484	16736596	142402067	192	146150											
AGR2	10551	broad.mit.edu	37	chr7	16841359	16841359	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggtttgactgtggtatctCtggccagagtgtaggagagg	16	6	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16841359	G	G	16841359	3	3	182	1	0	0	0	0	1	0	0	0	395	913	32	4	493	4	AGR2	7	16841359	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	104763	16841359	142297304	193	146151											
CREB5	9586	broad.mit.edu	37	chr7	28858876	28858876	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctcaccactcacagaacaGacctgaatccgattctttaa	5	13	3	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28858876	T	T	28858876	3	4	182	1	0	0	0	0	1	0	0	0	3892	942	33	3	1600	3	CREB5	7	28858876	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	12017517	28858876	130279787	194	146152											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31144470	31144470	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcatcctcaggcttattttCtctattcccagggctttgtg	8	11	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31144470	G	G	31144470	1	3	182	0	1	0	0	0	0	0	0	0	303	928	32	4		4	ADCYAP1R1	7	31144470	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	2285594	31144470	127994193	195	146153											
BBS9	27241	broad.mit.edu	37	chr7	33384214	33384214	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgaccgatgttgaggtgGgaactgaccttgtcccttct	12	10	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33384214	T	T	33384214	4	4	182	1	0	0	0	0	0	1	0	0	1347	1233	43	2	1339	2	BBS9	7	33384214	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	2239744	33384214	125754449	196	146154											
TNS3	64759	broad.mit.edu	37	chr7	47409037	47409037	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgctcttccgtcttatcCgtcctggcagaggctgtaga	12	12	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47409037	A	A	47409037	2	1	182	1	0	0	0	0	0	0	0	1	16467	639	23	1		1	TNS3	7	47409037	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	14024823	47409037	111729626	197	146155											
PKD1L1	168507	broad.mit.edu	37	chr7	47870862	47870862	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcaggccaaagaagcggtCccacaaatggcccacactgc	10	15	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47870862	T	T	47870862	2	4	182	1	0	0	0	0	0	0	0	1	12059	842	30	4		4	PKD1L1	7	47870862	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	461825	47870862	111267801	198	146156											
ZNF479	90827	broad.mit.edu	37	chr7	57188673	57188673	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattttgttttgggtagttGacaaacattggttaacttca	8	4	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57188673	C	C	57188673	4	2	182	1	0	0	0	0	0	1	0	0	18060	1294	45	4	1129	4	ZNF479	7	57188673	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	9317811	57188673	101949990	199	146157											
WBSCR28	135886	broad.mit.edu	37	chr7	73280192	73280193	+	Frame_Shift_Del	DEL	CC	-	-													ttttgccagagcaagaaactCccagagaataaatgtatccc							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73280193	-	-	73280192	7	5	182	1	0	1	0	1	0	0	0	0	17394	855	30	0	797	0	WBSCR28	7	73280192	Frame_Shift_Del	DEL	CC	TCGA-55-6712-01A-11D-1855-08	16091519	73280192	85858471	200	146158											
PCLO	27445	broad.mit.edu	37	chr7	82544361	82544361	+	Frame_Shift_Del	DEL	A	-	-													cctcttgagctttcagtcttAgggaagagctagaagaatcc							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82544361	-	-	82544361	7	5	182	1	0	1	0	1	0	0	0	0	11677	420	15	0	2580	0	PCLO	7	82544361	Frame_Shift_Del	DEL	A	TCGA-55-6712-01A-11D-1855-08	9264169	82544361	76594302	201	146159											
CYP51A1	1595	broad.mit.edu	37	chr7	91752461	91752461	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taagttaaaggaggcagattCtctccacagactgttttctg	9	8	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91752461	G	G	91752461	3	3	182	1	0	0	0	0	1	0	0	0	4228	912	32	4	486	4	CYP51A1	7	91752461	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	9208100	91752461	67386202	202	146160											
COL1A2	1278	broad.mit.edu	37	chr7	94038733	94038733	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccccgttggacctcctGtaagtagccactgtctttaa	9	14	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94038733	T	T	94038733	5	4	182	1	0	0	0	0	0	0	1	0	3710	1391	48	3	958	3	COL1A2	7	94038733	Splice_Site	SNP	G	TCGA-55-6712-01A-11D-1855-08	2286272	94038733	65099930	203	146161											
PON3	5446	broad.mit.edu	37	chr7	94989416	94989416	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgctcaccctgggcttctCagacaaaacattctggatgc	10	12	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94989416	T	T	94989416	3	4	182	1	0	0	0	0	1	0	0	0	12345	835	29	4	134	4	PON3	7	94989416	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	950683	94989416	64149247	204	146162											
SMURF1	57154	broad.mit.edu	37	chr7	98654648	98654648	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagccaggagaagggaattaGataaaataataaaaactaca	8	4	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98654648	A	A	98654648	1	1	182	0	1	0	0	0	0	0	0	0	14933	957	33	4		4	SMURF1	7	98654648	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	3665232	98654648	60484015	205	146163											
PILRB	29990	broad.mit.edu	37	chr7	99956586	99956586	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcggcttcctcaggatctCaaacctgcggaaggaggacc	13	12	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99956586	G	G	99956586	4	3	182	1	0	0	0	0	0	1	0	0	12021	838	29	4	344	4	PILRB	7	99956586	Nonsense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1301938	99956586	59182077	206	146164											
C7orf47	221908	broad.mit.edu	37	chr7	100033234	100033234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtacatggaggaagccCcacgcccagaccccatcacc	12	16	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100033234	A	A	100033234	1	1	182	0	1	0	0	0	0	0	0	0	2422	638	22	2		2	C7orf47	7	100033234	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	76648	100033234	59105429	207	146165											
GNB2	2783	broad.mit.edu	37	chr7	100275742	100275742	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccctgtgggacattgagacAggccagcagacagtgggttt	15	9	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100275742	T	T	100275742	2	4	182	1	0	0	0	0	0	0	0	1	6581	175	7	5		5	GNB2	7	100275742	Silent	SNP	A	TCGA-55-6712-01A-11D-1855-08	242508	100275742	58862921	208	146166											
ZAN	7455	broad.mit.edu	37	chr7	100345986	100345986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaagacaacgcccatcCcttctgtgactgggtccaga	9	13	1	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100345986	A	A	100345986	3	1	182	1	0	0	0	0	1	0	0	0	17640	623	22	2	1180	2	ZAN	7	100345986	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	70244	100345986	58792677	209	146167											
PLOD3	8985	broad.mit.edu	37	chr7	100855518	100855518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcccaccctctcctccccGcaagcacccgctcacatggc	5	23	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100855518	A	A	100855518	1	1	182	0	1	0	0	0	0	0	0	0	12198	1102	38	4		4	PLOD3	7	100855518	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	509532	100855518	58283145	210	146168											
ZNHIT1	10467	broad.mit.edu	37	chr7	100861385	100861385	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgtggcgcacgcgcagaAgtacaagctaccggaagtga	14	10	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100861385	C	C	100861385	1	2	182	0	1	0	0	0	0	0	0	0	18335	87	3	5		5	ZNHIT1	7	100861385	5'UTR	SNP	A	TCGA-55-6712-01A-11D-1855-08	5867	100861385	58277278	211	146169											
MET	4233	broad.mit.edu	37	chr7	116435946	116435946	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttggaacagatatgAagtaatgctaaaatgctggc	9	5	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116435946	G	G	116435946	3	3	182	1	0	0	0	0	1	0	0	0	9578	246	9	5	4073	5	MET	7	116435946	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	15574561	116435946	42702717	212	146170											
CFTR	1080	broad.mit.edu	37	chr7	117282538	117282538	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggaagagtactttgttatCagcttttttgagactactga	10	5	1	3	rs76649725		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117282538	G	G	117282538	4	3	182	1	0	0	0	0	0	1	0	0	3324	838	29	4	3854	4	CFTR	7	117282538	Nonsense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	846592	117282538	41856125	213	146171											
FSCN3	29999	broad.mit.edu	37	chr7	127240303	127240303	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctttcgcccttggggCaagtttgccctcaacttctg	10	14	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127240303	A	A	127240303	2	1	182	1	0	0	0	0	0	0	0	1	6129	697	25	3		3	FSCN3	7	127240303	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	9957765	127240303	31898360	214	146172											
DENND2A	27147	broad.mit.edu	37	chr7	140301553	140301553	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtccgaggggtggaccctCtggctgacttctgagccact	14	12	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140301553	G	G	140301553	3	3	182	1	0	0	0	0	1	0	0	0	4469	912	32	4	2456	4	DENND2A	7	140301553	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	13061250	140301553	18837110	215	146173											
NDUFB2	4708	broad.mit.edu	37	chr7	140402694	140402694	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgtgcacattgagcccCggtatagacagttcccccag	12	12	0	2	rs144669522		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140402694	A	A	140402694	2	1	182	1	0	0	0	0	0	0	0	1	10376	643	23	1		1	NDUFB2	7	140402694	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	101141	140402694	18735969	216	146174											
ZNF398	57541	broad.mit.edu	37	chr7	148873685	148873685	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatgctggtgagtatgaaAttaaagaggtgttcatgtcc	11	5	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148873685	G	G	148873685	1	3	182	0	1	0	0	0	0	0	0	0	18012	116	4	5		5	ZNF398	7	148873685	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	8470991	148873685	10264978	217	146175											
PAXIP1	22976	broad.mit.edu	37	chr7	154738478	154738478	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctacgattgccttcatagTggaaagacttgggcagattc	10	9	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154738478	C	C	154738478	3	2	182	1	0	0	0	0	1	0	0	0	11581	1696	59	5	257	5	PAXIP1	7	154738478	Missense_Mutation	SNP	T	TCGA-55-6712-01A-11D-1855-08	5864793	154738478	4400185	218	146176											
INSIG1	3638	broad.mit.edu	37	chr7	155093317	155093317	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtatcgacagtcacctcGgagaaccccacaaatttaag	7	13	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155093317	T	T	155093317	4	4	182	1	0	0	0	0	0	1	0	0	7835	1117	39	1	460	1	INSIG1	7	155093317	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	354839	155093317	4045346	219	146177											
RP1L1	94137	broad.mit.edu	37	chr8	10464923	10464923	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttcagcctccggggtctCtacgccttctggctctggct	10	17	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10464923	T	T	10464923	3	4	182	1	0	0	0	0	1	0	0	0	13644	922	32	4	521	4	RP1L1	8	10464923	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08		10464923	135899099	220	146178											
REEP4	80346	broad.mit.edu	37	chr8	21998023	21998023	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggcccattctctctccctCcccactccactcaggatgtg	7	18	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21998023	A	A	21998023	1	1	182	0	1	0	0	0	0	0	0	0	13315	870	30	3		3	REEP4	8	21998023	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	11533100	21998023	124365999	221	146179											
BNIP3L	665	broad.mit.edu	37	chr8	26265505	26265505	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttcttaaagtttgaattCttctttacagtcagaagaag	6	5	4	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26265505	G	G	26265505	1	3	182	0	1	0	0	0	0	0	0	0	1485	928	32	4		4	BNIP3L	8	26265505	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	4267482	26265505	120098517	222	146180											
SCARA5	286133	broad.mit.edu	37	chr8	27764624	27764624	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgcccatgtgctgcctggGactggtggtgaggctcaggg	17	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27764624	T	T	27764624	1	4	182	0	1	0	0	0	0	0	0	0	13992	1189	41	3		3	SCARA5	8	27764624	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1499119	27764624	118599398	223	146181											
TEX15	56154	broad.mit.edu	37	chr8	30704595	30704595	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttttatccgtatcaatttCacaatcagaaaccctatgtt	3	9	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30704595	T	T	30704595	3	4	182	1	0	0	0	0	1	0	0	0	15901	835	29	4	6446	4	TEX15	8	30704595	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2939971	30704595	115659427	224	146182											
CHRNA6	8973	broad.mit.edu	37	chr8	42611669	42611669	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggttatatctgtgtatatctCttcacaacagttgtatttga	7	6	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42611669	G	G	42611669	3	3	182	1	0	0	0	0	1	0	0	0	3418	922	32	4	819	4	CHRNA6	8	42611669	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	11907074	42611669	103752353	225	146183											
ST18	9705	broad.mit.edu	37	chr8	53076722	53076722	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttggcatgtgcctcaCagcacacttggcacacacta	8	12	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53076722	T	T	53076722	1	4	182	0	1	0	0	0	0	0	0	0	15330	493	17	4		4	ST18	8	53076722	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	10465053	53076722	93287300	226	146184											
RB1CC1	9821	broad.mit.edu	37	chr8	53569134	53569134	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagatttcaaggtctccttCtgctgggctctgctttcttc	9	11	5	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53569134	T	T	53569134	2	4	182	1	0	0	0	0	0	0	0	1	13207	912	32	4		4	RB1CC1	8	53569134	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	492412	53569134	92794888	227	146185											
NCOA2	10499	broad.mit.edu	37	chr8	71036906	71036906	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtggcggtatgaaaaggaGaaggatttgcggttacctgt	15	5	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71036906	C	C	71036906	1	2	182	0	1	0	0	0	0	0	0	0	10324	957	33	4		4	NCOA2	8	71036906	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	17467772	71036906	75327116	228	146186											
EYA1	2138	broad.mit.edu	37	chr8	72129125	72129125	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcccaaagttagccgaacAgaaagtccatcttaattagg	8	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72129125	T	T	72129125	1	4	182	0	1	0	0	0	0	0	0	0	5371	203	7	5		5	EYA1	8	72129125	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	1092219	72129125	74234897	229	146187											
JPH1	56704	broad.mit.edu	37	chr8	75227253	75227253	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attatttttgtattttccctCttctttggagccgtcaggaa	7	8	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75227253	T	T	75227253	3	4	182	1	0	0	0	0	1	0	0	0	8030	922	32	4	1019	4	JPH1	8	75227253	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	3098128	75227253	71136769	230	146188											
CRISPLD1	83690	broad.mit.edu	37	chr8	75924672	75924672	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttaaactgtagacatGggatgtagagctggaaagat	12	3	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75924672	A	A	75924672	4	1	182	1	0	0	0	0	0	1	0	0	3914	1357	47	4	269	4	CRISPLD1	8	75924672	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	697419	75924672	70439350	231	146189											
PSKH2	85481	broad.mit.edu	37	chr8	87076709	87076709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaacgatggctaacccgccGcaggacgctcagctcagaca	11	14	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87076709	A	A	87076709	3	1	182	1	0	0	0	0	1	0	0	0	12771	1086	38	4	826	4	PSKH2	8	87076709	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	11152037	87076709	59287313	232	146190											
CPNE3	8895	broad.mit.edu	37	chr8	87544779	87544779	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataatagagtggtcttgtttGaaatggaagccagaaaactg	11	4	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87544779	C	C	87544779	3	2	182	1	0	0	0	0	1	0	0	0	3845	1291	45	4	444	4	CPNE3	8	87544779	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	468070	87544779	58819243	233	146191											
CDH17	1015	broad.mit.edu	37	chr8	95143234	95143234	+	Intron	DEL	A	-	-													tgagtacctgccaggacaggAaaaaaaaatgaaaatacaac							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95143234	-	-	95143234	6	5	182	0	1	1	0	1	0	0	0	0	3132	261	9	0		0	CDH17	8	95143234	Intron	DEL	A	TCGA-55-6712-01A-11D-1855-08	7598455	95143234	51220788	234	146192											
INTS8	55656	broad.mit.edu	37	chr8	95869066	95869066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggtaacagagttctcacCgaagcttcgtcaggtcatgc	11	10	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95869066	A	A	95869066	3	1	182	1	0	0	0	0	1	0	0	0	7854	652	23	1	1872	1	INTS8	8	95869066	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	725832	95869066	50494956	235	146193											
GDF6	392255	broad.mit.edu	37	chr8	97172695	97172695	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccggggctgctgagcccGgggttcgtcctgaggccgcg	18	15	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97172695	T	T	97172695	2	4	182	1	0	0	0	0	0	0	0	1	6381	1115	39	1		1	GDF6	8	97172695	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	1303629	97172695	49191327	236	146194											
STK3	6788	broad.mit.edu	37	chr8	99917187	99917187	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatgcagaagctgctgccGctgctgctactgcctcgtaa	10	13	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99917187	A	A	99917187	1	1	182	0	1	0	0	0	0	0	0	0	15413	1102	38	4		4	STK3	8	99917187	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	2744492	99917187	46446835	237	146195											
RGS22	26166	broad.mit.edu	37	chr8	100994288	100994288	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattaataaagcagttgatAatagttgtaatcttcttctg	7	4	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100994288	G	G	100994288	2	3	182	1	0	0	0	0	0	0	0	1	13414	358	13	5		5	RGS22	8	100994288	Silent	SNP	A	TCGA-55-6712-01A-11D-1855-08	1077101	100994288	45369734	238	146196											
UBR5	51366	broad.mit.edu	37	chr8	103289239	103289240	+	Missense_Mutation	DNP	CC	TT	TT													gcccttcactttcagtaagtCctatttctgctagtaagcta							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	103289240	TT	TT	103289239	3	4	182	1	0	0	0	0	1	0	0	0	17031	855	30	4	1989	4	UBR5	8	103289239	Missense_Mutation	DNP	CC	TCGA-55-6712-01A-11D-1855-08	2294951	103289239	43074783	239	146197											
RSPO2	340419	broad.mit.edu	37	chr8	108970419	108970419	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgccgtgttctggtttccaGaccccatttaaatccacatg	7	12	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108970419	C	C	108970419	3	2	182	1	0	0	0	0	1	0	0	0	13821	933	33	4	234	4	RSPO2	8	108970419	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	5681180	108970419	37393603	240	146198											
TAF2	6873	broad.mit.edu	37	chr8	120805534	120805534	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtacaatgaaatactaTttagctcttaaatggaataa	7	4	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120805534	A	A	120805534	1	1	182	0	1	0	0	0	0	0	0	0	15643	1508	52	5		5	TAF2	8	120805534	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	11835115	120805534	25558488	241	146199											
HAS2	3037	broad.mit.edu	37	chr8	122626661	122626661	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattgcaaacatcttggcGggaagtaaactcgacatgta	10	8	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122626661	T	T	122626661	2	4	182	1	0	0	0	0	0	0	0	1	7028	1103	39	1		1	HAS2	8	122626661	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	1821127	122626661	23737361	242	146200											
RNF139	11236	broad.mit.edu	37	chr8	125498594	125498594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaagaggattcgtttccCagacatactacgagtctttt	9	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125498594	A	A	125498594	3	1	182	1	0	0	0	0	1	0	0	0	13553	594	21	2	710	2	RNF139	8	125498594	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2871933	125498594	20865428	243	146201											
EFR3A	23167	broad.mit.edu	37	chr8	132958769	132958769	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggcactggaccaacttctCatggcttgccattctcaaag	9	12	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132958769	T	T	132958769	2	4	182	1	0	0	0	0	0	0	0	1	4998	813	29	4		4	EFR3A	8	132958769	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	7460175	132958769	13405253	244	146202											
PHF20L1	51105	broad.mit.edu	37	chr8	133849973	133849973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtgaagagtgcttgtGttggcaacacagcgtgtgca	15	7	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133849973	T	T	133849973	3	4	182	1	0	0	0	0	1	0	0	0	11927	1377	48	3	2266	3	PHF20L1	8	133849973	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	891204	133849973	12514049	245	146203											
ZFAT	57623	broad.mit.edu	37	chr8	135612651	135612651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagcacccaggggagacGgggctgccgcttgggcttgc	17	11	0	2	rs77093412	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135612651	T	T	135612651	1	4	182	0	1	0	0	0	0	0	0	0	17758	1131	39	1		1	ZFAT	8	135612651	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1762678	135612651	10751371	246	146204											
FAM135B	51059	broad.mit.edu	37	chr8	139144882	139144882	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaaaaacttctccaggAagagttctgaatccagcaca	7	11	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139144882	G	G	139144882	3	3	182	1	0	0	0	0	1	0	0	0	5495	246	9	5	49	5	FAM135B	8	139144882	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	3532231	139144882	7219140	247	146205											
ZNF623	9831	broad.mit.edu	37	chr8	144733502	144733502	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatactgaagagaagctctAtgaatgtagtcagtatggga	11	5	3	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144733502	G	G	144733502	3	3	182	1	0	0	0	0	1	0	0	0	18174	449	16	5	1462	5	ZNF623	8	144733502	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	5588620	144733502	1630520	248	146206											
DGAT1	8694	broad.mit.edu	37	chr8	145541005	145541005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacactcaccaccagtccCggtagaactcccggtctcca	9	17	2	1	rs138800445		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145541005	A	A	145541005	3	1	182	1	0	0	0	0	1	0	0	0	4497	652	23	1	401	1	DGAT1	8	145541005	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	807503	145541005	823017	249	146207											
PPP1R16A	84988	broad.mit.edu	37	chr8	145724389	145724389	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acagtgagtgctggacgcctCtgcatgctgcggccacctgc	13	14	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145724389	T	T	145724389	2	4	182	1	0	0	0	0	0	0	0	1	12466	912	32	4		4	PPP1R16A	8	145724389	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	183384	145724389	639633	250	146208											
KIAA1432	57589	broad.mit.edu	37	chr9	5769139	5769139	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaacgtacccgagccgccCgggtagacaactttgtaata	11	11	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5769139	A	A	5769139	2	1	182	1	0	0	0	0	0	0	0	1	8303	643	23	1		1	KIAA1432	9	5769139	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08		5769139	135444292	251	146209											
KIAA1161	57462	broad.mit.edu	37	chr9	34372822	34372822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaggtgagaagttgtcGggcaggaaggtgtacatagc	17	5	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34372822	T	T	34372822	2	4	182	1	0	0	0	0	0	0	0	1	8281	1103	39	1		1	KIAA1161	9	34372822	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	28603683	34372822	106840609	252	146210											
PIGO	84720	broad.mit.edu	37	chr9	35091480	35091480	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcctcctgcatgtgtcGgtagatttgagggaccacat	11	10	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35091480	T	T	35091480	2	4	182	1	0	0	0	0	0	0	0	1	11989	1124	39	1		1	PIGO	9	35091480	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	718658	35091480	106121951	253	146211											
SLC28A3	64078	broad.mit.edu	37	chr9	86903009	86903009	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagggttattttaggtttttCtgtctcaggccaaaagagtt	11	5	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86903009	G	G	86903009	3	3	182	1	0	0	0	0	1	0	0	0	14647	922	32	4	869	4	SLC28A3	9	86903009	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	51811529	86903009	54310422	254	146212											
DAPK1	1612	broad.mit.edu	37	chr9	90315030	90315037	+	Splice_Site	DEL	AGGTTTGG	-	-													gaggctgctgctcttcccttAggtttggaaatgatcttcac							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90315037	-	-	90315030	8	5	182	1	0	1	0	1	0	0	1	0	4268	434	15	0	2839	0	DAPK1	9	90315030	Splice_Site	DEL	AGGTTTGG	TCGA-55-6712-01A-11D-1855-08	3412021	90315030	50898401	255	146213											
IKBKAP	8518	broad.mit.edu	37	chr9	111662725	111662725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccattaactgcaattgaaaCcgcacacattatgtgaaata	5	9	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111662725	A	A	111662725	1	1	182	0	1	0	0	0	0	0	0	0	7680	522	18	3		3	IKBKAP	9	111662725	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	21347695	111662725	29550706	256	146214											
SUSD1	64420	broad.mit.edu	37	chr9	114911613	114911613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcaatagaagcccccgGgggtgttgtggcaagatgtg	15	7	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114911613	T	T	114911613	3	4	182	1	0	0	0	0	1	0	0	0	15525	1232	43	2	2019	2	SUSD1	9	114911613	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3248888	114911613	26301818	257	146215											
TNC	3371	broad.mit.edu	37	chr9	117846714	117846714	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggttgaccgtctcttcCgtcacttctgtcacaacgag	9	14	4	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117846714	A	A	117846714	2	1	182	1	0	0	0	0	0	0	0	1	16393	639	23	1		1	TNC	9	117846714	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2935101	117846714	23366717	258	146216											
NEBL	10529	broad.mit.edu	37	chr10	21108395	21108395	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctcactctctctatctcCggggtcatgcttaccggagt	9	15	5	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21108395	T	T	21108395	2	4	182	1	0	0	0	0	0	0	0	1	10398	639	23	4		4	NEBL	10	21108395	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08		21108395	114426352	259	146217											
C10orf140	387640	broad.mit.edu	37	chr10	21806753	21806753	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgacttcaggtctcccatcTcgggcactaaatgatcccca	7	15	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21806753	G	G	21806753	1	3	182	0	1	0	0	0	0	0	0	0	1606	1566	54	5		5	C10orf140	10	21806753	5'UTR	SNP	T	TCGA-55-6712-01A-11D-1855-08	698358	21806753	113727994	260	146218											
MLLT10	8028	broad.mit.edu	37	chr10	22015199	22015199	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actctatctggatcttctctCagtcaggcaccatctcatat	5	13	7	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22015199	T	T	22015199	2	4	182	1	0	0	0	0	0	0	0	1	9719	813	29	4		4	MLLT10	10	22015199	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	208446	22015199	113519548	261	146219											
ENKUR	219670	broad.mit.edu	37	chr10	25304914	25304914	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccacaacttttttctccCtgtcccagtatctccgtccc	3	18	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25304914	G	G	25304914	1	3	182	0	1	0	0	0	0	0	0	0	5162	696	24	4		4	ENKUR	10	25304914	5'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	3289715	25304914	110229833	262	146220											
PTCHD3	374308	broad.mit.edu	37	chr10	27702933	27702933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcggcaggcggggtgcatCgtccagcatcgacggccggg	18	13	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27702933	A	A	27702933	3	1	182	1	0	0	0	0	1	0	0	0	12840	884	31	3	2072	3	PTCHD3	10	27702933	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2398019	27702933	107831814	263	146221											
SLC18A3	6572	broad.mit.edu	37	chr10	50819573	50819573	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgttgctgctggcagtgGccaaacccttctcggcggct	13	14	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50819573	A	A	50819573	3	1	182	1	0	0	0	0	1	0	0	0	14540	1203	42	4	789	4	SLC18A3	10	50819573	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	23116640	50819573	84715174	264	146222											
SLC18A3	6572	broad.mit.edu	37	chr10	50819935	50819935	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccgctccttcgcgccgctAgtggtctcactatgcggcct	11	16	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50819935	T	T	50819935	2	4	182	1	0	0	0	0	0	0	0	1	14540	407	15	5		5	SLC18A3	10	50819935	Silent	SNP	A	TCGA-55-6712-01A-11D-1855-08	362	50819935	84714812	265	146223											
ZWINT	11130	broad.mit.edu	37	chr10	58120024	58120024	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggaccagaccctggcttCtgaaaggctcgctctcatct	9	15	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58120024	G	G	58120024	1	3	182	0	1	0	0	0	0	0	0	0	18378	928	32	4		4	ZWINT	10	58120024	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	7300089	58120024	77414723	266	146224											
DLG5	9231	broad.mit.edu	37	chr10	79603260	79603260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggccgtgtccctctgctGggtcagcatctctgtctgct	12	13	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79603260	T	T	79603260	3	4	182	1	0	0	0	0	1	0	0	0	4598	1357	47	2	4798	2	DLG5	10	79603260	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	21483236	79603260	55931487	267	146225											
RPS24	6229	broad.mit.edu	37	chr10	79800494	79800494	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtatttgcagtttcctggGactgctaggaggttagtctg	13	6	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79800494	T	T	79800494	1	4	182	0	1	0	0	0	0	0	0	0	13746	1189	41	3		3	RPS24	10	79800494	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	197234	79800494	55734253	268	146226											
ZMIZ1	57178	broad.mit.edu	37	chr10	80862991	80862991	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgagaactgaggacatgggGaaaccgtgagggggagcgag	19	7	0	3	rs117089629	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80862991	A	A	80862991	1	1	182	0	1	0	0	0	0	0	0	0	17822	1189	41	4		4	ZMIZ1	10	80862991	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1062497	80862991	54671756	269	146227											
WAPAL	23063	broad.mit.edu	37	chr10	88213425	88213442	+	In_Frame_Del	DEL	TTAAATTAAGCAACACCC	-	-													aatcttaccattatcattagTtaaattaagcaacaccccga							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88213442	-	-	88213425	7	5	182	1	0	1	0	1	0	0	0	0	17375	1725	60	0	779	0	WAPAL	10	88213425	In_Frame_Del	DEL	TTAAATTAAGCAACACCC	TCGA-55-6712-01A-11D-1855-08	7350434	88213425	47321322	270	146228											
HECTD2	143279	broad.mit.edu	37	chr10	93247529	93247529	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcaacagatgataaacatCgcaagggtaagtcagctata	10	7	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93247529	A	A	93247529	2	1	182	1	0	0	0	0	0	0	0	1	7107	874	31	3		3	HECTD2	10	93247529	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	5034104	93247529	42287218	271	146229											
CPEB3	22849	broad.mit.edu	37	chr10	93851740	93851740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtccttacttcatttcCatcaaccccaaatgagaata	4	12	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93851740	A	A	93851740	1	1	182	0	1	0	0	0	0	0	0	0	3834	609	21	2		2	CPEB3	10	93851740	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	604211	93851740	41683007	272	146230											
SORBS1	10580	broad.mit.edu	37	chr10	97117517	97117517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagatccccaggagcccCgtctgattccctcttcactg	9	15	3	2	rs149433187		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97117517	A	A	97117517	3	1	182	1	0	0	0	0	1	0	0	0	15041	652	23	1	1987	1	SORBS1	10	97117517	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	3265777	97117517	38417230	273	146231											
BTRC	8945	broad.mit.edu	37	chr10	103291028	103291028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaacaaacctcctgacGggaatgctcctcccaactct	5	15	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103291028	T	T	103291028	3	4	182	1	0	0	0	0	1	0	0	0	1579	1116	39	1	804	1	BTRC	10	103291028	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	6173511	103291028	32243719	274	146232											
SORCS1	114815	broad.mit.edu	37	chr10	108536277	108536277	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcattgtctcaaacaaGgtaagtatgctcaccttttg	7	9	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108536277	T	T	108536277	1	4	182	0	1	0	0	0	0	0	0	0	15044	1015	35	2		2	SORCS1	10	108536277	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	5245249	108536277	26998470	275	146233											
ATRNL1	26033	broad.mit.edu	37	chr10	116919735	116919735	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattctcttaatccataTgttgtatttctataatctga	3	6	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116919735	C	C	116919735	1	2	182	0	1	0	0	0	0	0	0	0	1211	1479	51	5		5	ATRNL1	10	116919735	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	8383458	116919735	18615012	276	146234											
CLRN3	119467	broad.mit.edu	37	chr10	129676623	129676623	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatttggaacaactcttcGgagagttggttggactgcgt	13	7	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129676623	A	A	129676623	2	1	182	1	0	0	0	0	0	0	0	1	3591	1103	39	4		4	CLRN3	10	129676623	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	12756888	129676623	5858124	277	146235											
TMEM80	283232	broad.mit.edu	37	chr11	700597	700597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttacttatgttccgtcCgcgcctctgctcttcaggtc	9	14	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	700597	A	A	700597	1	1	182	0	1	0	0	0	0	0	0	0	16327	667	23	1		1	TMEM80	11	700597	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08		700597	134305919	278	146236											
ZNF195	7748	broad.mit.edu	37	chr11	3380601	3380601	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacacttgtagggtttctctCcagtatgaattctcttatgt	7	9	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3380601	G	G	3380601	3	3	182	1	0	0	0	0	1	0	0	0	17884	855	30	4	256	4	ZNF195	11	3380601	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2680004	3380601	131625915	279	146237											
OR51I1	390063	broad.mit.edu	37	chr11	5462439	5462439	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtgtggatgaagaacatCtggaccaggcaagcattaaa	11	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5462439	A	A	5462439	3	1	182	1	0	0	0	0	1	0	0	0	11194	912	32	3	642	3	OR51I1	11	5462439	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2081838	5462439	129544077	280	146238											
OVCH2	341277	broad.mit.edu	37	chr11	7722003	7722003	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccaggcccctttcttattCcggcacatgagtgaacctcc	8	15	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7722003	A	A	7722003	2	1	182	1	0	0	0	0	0	0	0	1	11418	842	30	3		3	OVCH2	11	7722003	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2259564	7722003	127284513	281	146239											
CTR9	9646	broad.mit.edu	37	chr11	10800533	10800533	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgaatcagatcacgaatcgGagagaggatctgataatgag	12	7	3	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10800533	T	T	10800533	4	4	182	1	0	0	0	0	0	1	0	0	4058	1175	41	3	3501	3	CTR9	11	10800533	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3078530	10800533	124205983	282	146240											
SLC6A5	9152	broad.mit.edu	37	chr11	20621245	20621245	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgtttgcttttgttctttCaagaggaaagggggctgagg	15	4	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20621245	G	G	20621245	1	3	182	0	1	0	0	0	0	0	0	0	14801	841	29	4		4	SLC6A5	11	20621245	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	9820712	20621245	114385271	283	146241											
LIN7C	55327	broad.mit.edu	37	chr11	27520959	27520959	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgaggcccccatgtctatCagcaattccacctggaatta	7	12	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27520959	T	T	27520959	3	4	182	1	0	0	0	0	1	0	0	0	8885	826	29	4	216	4	LIN7C	11	27520959	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	6899714	27520959	107485557	284	146242											
FSHB	2488	broad.mit.edu	37	chr11	30253374	30253374	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccaattatttttggtttgGtcagcttacataatgattat	7	5	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30253374	C	C	30253374	1	2	182	0	1	0	0	0	0	0	0	0	6132	1276	44	4		4	FSHB	11	30253374	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	2732415	30253374	104753142	285	146243											
SYT13	57586	broad.mit.edu	37	chr11	45265664	45265664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttttgagcatctcctccCagtggctgcgctcagagccc	11	14	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45265664	A	A	45265664	3	1	182	1	0	0	0	0	1	0	0	0	15588	595	21	2	64	2	SYT13	11	45265664	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	15012290	45265664	89740852	286	146244											
SYT13	57586	broad.mit.edu	37	chr11	45274044	45274044	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcccgtccaggcccaggcgGagctccccggccacgctgtg	14	18	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45274044	A	A	45274044	2	1	182	1	0	0	0	0	0	0	0	1	15588	1161	41	4		4	SYT13	11	45274044	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	8380	45274044	89732472	287	146245											
OR4C15	81309	broad.mit.edu	37	chr11	55321870	55321870	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgataccacaaattgatctgAagcaaattttcctttgtcct	5	9	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55321870	C	C	55321870	3	2	182	1	0	0	0	0	1	0	0	0	11142	247	9	5	90	5	OR4C15	11	55321870	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	10047826	55321870	79684646	288	146246											
SPRYD5	84767	broad.mit.edu	37	chr11	55657542	55657542	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcagcccattggcagaattCccacagtctattacttcttg	7	12	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55657542	T	T	55657542	1	4	182	0	1	0	0	0	0	0	0	0	15229	870	30	4		4	SPRYD5	11	55657542	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	335672	55657542	79348974	289	146247											
MRPL16	54948	broad.mit.edu	37	chr11	59573867	59573867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccagtatttccccttgtGggtcaagtcatatgggctca	10	12	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59573867	T	T	59573867	3	4	182	1	0	0	0	0	1	0	0	0	9875	1348	47	2	50	2	MRPL16	11	59573867	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3916325	59573867	75432649	290	146248											
INCENP	3619	broad.mit.edu	37	chr11	61897928	61897928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcacagcccgatcgcccCgtcttccccgagtccccaag	10	20	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61897928	A	A	61897928	3	1	182	1	0	0	0	0	1	0	0	0	7803	652	23	1	939	1	INCENP	11	61897928	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2324061	61897928	73108588	291	146249											
CHRM1	1128	broad.mit.edu	37	chr11	62677782	62677782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagcagcctgggggccCggcagcagcgacagcagcgg	17	15	0	0	rs150954530		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62677782	A	A	62677782	3	1	182	1	0	0	0	0	1	0	0	0	3407	652	23	1	595	1	CHRM1	11	62677782	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	779854	62677782	72328734	292	146250											
DPP3	10072	broad.mit.edu	37	chr11	66260111	66260111	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtaggcattcagtacatgCgtgatggctggagtagggtg	16	6	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66260111	T	T	66260111	1	4	182	0	1	0	0	0	0	0	0	0	4768	783	27	4		4	DPP3	11	66260111	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3582329	66260111	68746405	293	146251											
TSKU	25987	broad.mit.edu	37	chr11	76507338	76507338	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtccgggtgccttcgcGgggctgggaggccttacaca	16	11	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76507338	T	T	76507338	2	4	182	1	0	0	0	0	0	0	0	1	16752	1103	39	1		1	TSKU	11	76507338	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	10247227	76507338	58499178	294	146252											
MYO7A	4647	broad.mit.edu	37	chr11	76885842	76885842	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtgcgccagctgcggtactCaggaatgatggagaccatcc	13	12	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76885842	A	A	76885842	4	1	182	1	0	0	0	0	0	1	0	0	10176	838	29	3	2038	3	MYO7A	11	76885842	Nonsense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	378504	76885842	58120674	295	146253											
C11orf82	220042	broad.mit.edu	37	chr11	82645329	82645329	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagaaaaaggcccaccTtcagtgtgtgaaactcgaag	9	9	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82645329	G	G	82645329	2	3	182	1	0	0	0	0	0	0	0	1	1677	1596	56	5		5	C11orf82	11	82645329	Silent	SNP	T	TCGA-55-6712-01A-11D-1855-08	5759487	82645329	52361187	296	146254											
RAB30	27314	broad.mit.edu	37	chr11	82693228	82693228	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagttgaaattacaacaagtCaaatagctgatgcttttccc	6	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82693228	G	G	82693228	3	3	182	1	0	0	0	0	1	0	0	0	13027	825	29	4	24	4	RAB30	11	82693228	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	47899	82693228	52313288	297	146255											
TAF1D	79101	broad.mit.edu	37	chr11	93469869	93469869	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtcacttactgccaatttGatatcacattcgttatcttc	4	10	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93469869	C	C	93469869	3	2	182	1	0	0	0	0	1	0	0	0	15641	1280	45	4	160	4	TAF1D	11	93469869	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	10776641	93469869	41536647	298	146256											
GRIA4	2893	broad.mit.edu	37	chr11	105795124	105795124	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgtgttttttctcttataGaaagcagagattgctattgc	8	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105795124	C	C	105795124	5	2	182	1	0	0	0	0	0	0	1	0	6836	956	33	4	1555	4	GRIA4	11	105795124	Splice_Site	SNP	G	TCGA-55-6712-01A-11D-1855-08	12325255	105795124	29211392	299	146257											
SDHD	6392	broad.mit.edu	37	chr11	111958662	111958662	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctatcccagaatggtgtgGagtgcagcacatacacttgt	10	10	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111958662	A	A	111958662	3	1	182	1	0	0	0	0	1	0	0	0	14080	1174	41	4	140	4	SDHD	11	111958662	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	6163538	111958662	23047854	300	146258											
GRIK4	2900	broad.mit.edu	37	chr11	120833308	120833308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaatccaccatgaacgaGtactatcggcagcgaaactg	10	11	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120833308	T	T	120833308	3	4	182	1	0	0	0	0	1	0	0	0	6842	1020	36	3	2246	3	GRIK4	11	120833308	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	8874646	120833308	14173208	301	146259											
OR10G9	219870	broad.mit.edu	37	chr11	123894183	123894183	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctcagtggctctctgcactCtgctgtccagaccatattga	9	13	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123894183	A	A	123894183	3	1	182	1	0	0	0	0	1	0	0	0	10998	913	32	3	466	3	OR10G9	11	123894183	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	3060875	123894183	11112333	302	146260											
OR10G7	390265	broad.mit.edu	37	chr11	123909541	123909541	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgaggaagtagtacatGggggtgtggaggtgagaatc	19	2	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123909541	T	T	123909541	2	4	182	1	0	0	0	0	0	0	0	1	10996	1335	47	2		2	OR10G7	11	123909541	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	15358	123909541	11096975	303	146261											
OR8D2	283160	broad.mit.edu	37	chr11	124189796	124189796	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataaggaagaaataaagttGagtaatgcattccagaaagg	10	3	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124189796	C	C	124189796	3	2	182	1	0	0	0	0	1	0	0	0	11326	1299	45	4	640	4	OR8D2	11	124189796	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	280255	124189796	10816720	304	146262											
NCAPD3	23310	broad.mit.edu	37	chr11	134022911	134022911	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgtctttattcctggcGggagaccgcacattccactg	12	11	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134022911	T	T	134022911	2	4	182	1	0	0	0	0	0	0	0	1	10301	1103	39	1		1	NCAPD3	11	134022911	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	9833115	134022911	983605	305	146263											
WNK1	65125	broad.mit.edu	37	chr12	989022	989022	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctacaacagctgcgatccCgggggtatcaactgtggttc	12	11	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	989022	A	A	989022	3	1	182	1	0	0	0	0	1	0	0	0	17504	652	23	1	4201	1	WNK1	12	989022	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08		989022	132862873	306	146264											
CACNA1C	775	broad.mit.edu	37	chr12	2566832	2566832	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgaaggcgctgagggccttCcgcgtgctgcgccccctgcg	16	15	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2566832	T	T	2566832	2	4	182	1	0	0	0	0	0	0	0	1	2566	854	30	4		4	CACNA1C	12	2566832	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1577810	2566832	131285063	307	146265											
PRMT8	56341	broad.mit.edu	37	chr12	3701383	3701383	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttcccacctcccctgttCtctcacccctcagcccctga	3	22	4	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3701383	G	G	3701383	1	3	182	0	1	0	0	0	0	0	0	0	12648	928	32	4		4	PRMT8	12	3701383	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1134551	3701383	130150512	308	146266											
KCNA1	3736	broad.mit.edu	37	chr12	5021670	5021670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaccactgtaggatacGgtgacatgtaccctgtgaca	10	11	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021670	T	T	5021670	3	4	182	1	0	0	0	0	1	0	0	0	8071	1116	39	1	1128	1	KCNA1	12	5021670	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	1320287	5021670	128830225	309	146267											
LRRC23	10233	broad.mit.edu	37	chr12	7016626	7016626	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctggtagctcactgggtcaGagggtggtgcagggaagagg	19	7	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7016626	A	A	7016626	1	1	182	0	1	0	0	0	0	0	0	0	9065	957	33	4		4	LRRC23	12	7016626	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1994956	7016626	126835269	310	146268											
PRB4	5545	broad.mit.edu	37	chr12	11339600	11339600	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcattaataaatttacaaTcaaaccattgcagaagagca	4	7	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11339600	G	G	11339600	1	3	182	0	1	0	0	0	0	0	0	0	12551	1450	50	5		5	PRB4	12	11339600	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	4322974	11339600	122512295	311	146269											
PRB3	5544	broad.mit.edu	37	chr12	11420643	11420643	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtccttctggctttccCggatgaggcgggggaccttg	17	10	1	1	rs112519996		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11420643	A	A	11420643	2	1	182	1	0	0	0	0	0	0	0	1	12550	639	23	1		1	PRB3	12	11420643	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	81043	11420643	122431252	312	146270											
KIF21A	55605	broad.mit.edu	37	chr12	39745560	39745560	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatagagattcatttagtGgtgattttataatcccacct	7	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39745560	A	A	39745560	1	1	182	0	1	0	0	0	0	0	0	0	8358	1363	47	4		4	KIF21A	12	39745560	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	28324917	39745560	94106335	313	146271											
NELL2	4753	broad.mit.edu	37	chr12	45173775	45173775	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taatgcagtctgacttcattCcgatggccactactttccag	7	12	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45173775	A	A	45173775	2	1	182	1	0	0	0	0	0	0	0	1	10429	842	30	3		3	NELL2	12	45173775	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	5428215	45173775	88678120	314	146272											
LIMA1	51474	broad.mit.edu	37	chr12	50570901	50570901	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctctttatctgttcttcCacagagagctctttgaccac	5	12	4	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50570901	A	A	50570901	2	1	182	1	0	0	0	0	0	0	0	1	8868	581	21	2		2	LIMA1	12	50570901	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	5397126	50570901	83280994	315	146273											
ATF1	466	broad.mit.edu	37	chr12	51208024	51208027	+	Intron	DEL	ACTT	-	-													ctcctaacactgtcagagacActtactaactaactcattca							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51208027	-	-	51208024	6	5	182	0	1	1	0	1	0	0	0	0	1083	174	6	0		0	ATF1	12	51208024	Intron	DEL	ACTT	TCGA-55-6712-01A-11D-1855-08	637123	51208024	82643871	316	146274											
SCN8A	6334	broad.mit.edu	37	chr12	52168196	52168196	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccagcaggaacacagaaAcaggggtctctctttttcta	8	11	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52168196	T	T	52168196	1	4	182	0	1	0	0	0	0	0	0	0	14037	58	2	5		5	SCN8A	12	52168196	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	960172	52168196	81683699	317	146275											
ACVRL1	94	broad.mit.edu	37	chr12	52310003	52310003	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgggagattgcccgccGgaccatcgtgaatggtgagg	17	9	0	3	rs121909284		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52310003	A	A	52310003	3	1	182	1	0	0	0	0	1	0	0	0	225	1116	39	4	1258	4	ACVRL1	12	52310003	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	141807	52310003	81541892	318	146276											
KRT79	338785	broad.mit.edu	37	chr12	53227843	53227843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgacagagatactcttgtGgccccccaagttatagaggc	10	11	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53227843	T	T	53227843	3	4	182	1	0	0	0	0	1	0	0	0	8563	1348	47	2	1441	2	KRT79	12	53227843	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	917840	53227843	80624052	319	146277											
SPRYD3	84926	broad.mit.edu	37	chr12	53459680	53459680	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcagcattccaatggtgGggaagaagcctccagaagga	13	9	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53459680	T	T	53459680	3	4	182	1	0	0	0	0	1	0	0	0	15227	1232	43	2	67	2	SPRYD3	12	53459680	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	231837	53459680	80392215	320	146278											
NEUROD4	58158	broad.mit.edu	37	chr12	55421242	55421242	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttaagttcaatgtttcaGagaatgacgtggagacattt	10	5	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55421242	C	C	55421242	1	2	182	0	1	0	0	0	0	0	0	0	10445	957	33	4		4	NEUROD4	12	55421242	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	1961562	55421242	78430653	321	146279											
IRAK3	11213	broad.mit.edu	37	chr12	66611258	66611258	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaaggaagtaggttaaatCatgtgtgactaacatggctg	11	6	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66611258	G	G	66611258	1	3	182	0	1	0	0	0	0	0	0	0	7894	841	29	4		4	IRAK3	12	66611258	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	11190016	66611258	67240637	322	146280											
HELB	92797	broad.mit.edu	37	chr12	66708984	66708984	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcttgggggtattttttctCagagtaagtcttgctactgt	10	6	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66708984	G	G	66708984	1	3	182	0	1	0	0	0	0	0	0	0	7112	841	29	4		4	HELB	12	66708984	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	97726	66708984	67142911	323	146281											
GRIP1	23426	broad.mit.edu	37	chr12	66961855	66961855	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacactcagcataaaaggcTaaagtaggtggatgatggga	12	5	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66961855	A	A	66961855	1	1	182	0	1	0	0	0	0	0	0	0	6853	1537	53	5		5	GRIP1	12	66961855	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	252871	66961855	66890040	324	146282											
TSPAN8	7103	broad.mit.edu	37	chr12	71531774	71531774	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcttcctggaattgtttttCactttcccctgtggcgctca	9	12	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71531774	T	T	71531774	3	4	182	1	0	0	0	0	1	0	0	0	16778	835	29	4	326	4	TSPAN8	12	71531774	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	4569919	71531774	62320121	325	146283											
ZFC3H1	196441	broad.mit.edu	37	chr12	72036431	72036431	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttatcttctatggaagagtAtcaaaaatcatggtgattca	8	5	5	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72036431	G	G	72036431	1	3	182	0	1	0	0	0	0	0	0	0	17759	464	16	5		5	ZFC3H1	12	72036431	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	504657	72036431	61815464	326	146284											
APAF1	317	broad.mit.edu	37	chr12	99121139	99121139	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaaaataatagcctatatCatactttccaagctattttc	3	8	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99121139	T	T	99121139	1	4	182	0	1	0	0	0	0	0	0	0	757	841	29	4		4	APAF1	12	99121139	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	27084708	99121139	34730756	327	146285											
CKAP4	10970	broad.mit.edu	37	chr12	106632707	106632707	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctctttaagaggggacaaGaaattggggggtaggggaca	17	4	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106632707	C	C	106632707	1	2	182	0	1	0	0	0	0	0	0	0	3475	957	33	4		4	CKAP4	12	106632707	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	7511568	106632707	27219188	328	146286											
RFX4	5992	broad.mit.edu	37	chr12	107080752	107080752	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctgggtgagtgagacGggcaagaaagaagtgagcaa	17	6	0	5			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107080752	A	A	107080752	2	1	182	1	0	0	0	0	0	0	0	1	13373	1103	39	4		4	RFX4	12	107080752	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	448045	107080752	26771143	329	146287											
SVOP	55530	broad.mit.edu	37	chr12	109313526	109313526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccatggtcttcttgcgcCccaggcggtcaataatccac	11	14	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109313526	A	A	109313526	3	1	182	1	0	0	0	0	1	0	0	0	15541	623	22	2	469	2	SVOP	12	109313526	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2232774	109313526	24538369	330	146288											
GIT2	9815	broad.mit.edu	37	chr12	110390306	110390306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcccactctcttccgtcGggtgtcatacccctcctgct	9	17	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110390306	T	T	110390306	1	4	182	0	1	0	0	0	0	0	0	0	6461	1131	39	1		1	GIT2	12	110390306	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1076780	110390306	23461589	331	146289											
NAA25	80018	broad.mit.edu	37	chr12	112485592	112485592	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactttctgctaaactggttGatctgtgatagagaaaaatc	8	6	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112485592	A	A	112485592	3	1	182	1	0	0	0	0	1	0	0	0	10215	1294	45	4	1067	4	NAA25	12	112485592	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	2095286	112485592	21366303	332	146290											
C12orf51	283450	broad.mit.edu	37	chr12	112703826	112703826	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatcaactaccctggtaatGactcctagaatactgatgct	6	12	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112703826	T	T	112703826	1	4	182	0	1	0	0	0	0	0	0	0	1709	1305	45	3		3	C12orf51	12	112703826	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	218234	112703826	21148069	333	146291											
GCN1L1	10985	broad.mit.edu	37	chr12	120574969	120574969	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggccagaagggcacaacaGactgcacgcccacagccccc	11	17	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120574969	C	C	120574969	1	2	182	0	1	0	0	0	0	0	0	0	6361	957	33	4		4	GCN1L1	12	120574969	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	7871143	120574969	13276926	334	146292											
CABP1	9478	broad.mit.edu	37	chr12	121098168	121098168	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctctaccaggcatctgcGtcccttcggtcctcaccctt	6	19	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121098168	A	A	121098168	1	1	182	0	1	0	0	0	0	0	0	0	2557	1160	40	4		4	CABP1	12	121098168	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	523199	121098168	12753727	335	146293											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124237000	124237000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagataagtaaccaagcttcCatagagataatcatgttaag	7	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124237000	A	A	124237000	1	1	182	0	1	0	0	0	0	0	0	0	1173	609	21	2		2	ATP6V0A2	12	124237000	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3138832	124237000	9614895	336	146294											
NCOR2	9612	broad.mit.edu	37	chr12	124957515	124957516	+	Frame_Shift_Ins	INS	-	A	A													acctgcttcttcttcagcttINSagagatctgctgctctacca							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124957516	A	A	124957515	7	5	182	1	0	1	1	0	0	0	0	0	10331	1763	61	0	7170	0	NCOR2	12	124957515	Frame_Shift_Ins	INS	-	TCGA-55-6712-01A-11D-1855-08	720515	124957515	8894380	337	146295											
TMEM132B	114795	broad.mit.edu	37	chr12	126128836	126128836	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccaacagaaggtgaggaaTcaaagagaaggctgtggatc	14	6	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126128836	C	C	126128836	1	2	182	0	1	0	0	0	0	0	0	0	16169	1450	50	5		5	TMEM132B	12	126128836	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	1171321	126128836	7723059	338	146296											
POLE	5426	broad.mit.edu	37	chr12	133209087	133209087	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acataatcctgagagaaggtGatcattcctggaagtataag	10	6	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133209087	C	C	133209087	3	2	182	1	0	0	0	0	1	0	0	0	12291	1280	45	4	736	4	POLE	12	133209087	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	7080251	133209087	642808	339	146297											
TPTE2	93492	broad.mit.edu	37	chr13	20138064	20138064	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actgtccaagtttgagcttgGaattaaacactgaagaggac	10	7	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20138064	C	C	20138064	1	2	182	0	1	0	0	0	0	0	0	0	16555	1189	41	4		4	TPTE2	13	20138064	5'Flank	SNP	G	TCGA-55-6712-01A-11D-1855-08		20138064	95031814	340	146298											
CDADC1	81602	broad.mit.edu	37	chr13	49848447	49848447	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcataaaacaggagttGgggcagtcatttgggcagaa	14	5	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49848447	T	T	49848447	3	4	182	1	0	0	0	0	1	0	0	0	3083	1348	47	2	1043	2	CDADC1	13	49848447	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	29710383	49848447	65321431	341	146299											
PIBF1	10464	broad.mit.edu	37	chr13	73468215	73468215	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaaaaaaaaaaaaaaaAaacaaggaaatacgtatttc	3	4	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73468215	C	C	73468215	1	2	182	0	1	0	0	0	0	0	0	0	11974	29	1	5		5	PIBF1	13	73468215	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	23619768	73468215	41701663	342	146300											
KLF12	11278	broad.mit.edu	37	chr13	74339025	74339025	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattttaacataagccctatTaaagtttcccgtaagaccta	4	9	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74339025	A	A	74339025	1	1	182	0	1	0	0	0	0	0	0	0	8411	1769	61	5		5	KLF12	13	74339025	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	870810	74339025	40830853	343	146301											
SLC10A2	6555	broad.mit.edu	37	chr13	103698436	103698436	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaataattaaatatagttacGgtttaagaacgtaatttgga	7	2	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103698436	A	A	103698436	1	1	182	0	1	0	0	0	0	0	0	0	14487	1131	39	4		4	SLC10A2	13	103698436	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	29359411	103698436	11471442	344	146302											
COL4A2	1284	broad.mit.edu	37	chr13	111091027	111091027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactgagggtaaaccacgcCttttataactgcagttgtcg	11	9	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111091027	A	A	111091027	1	1	182	0	1	0	0	0	0	0	0	0	3722	696	24	2		2	COL4A2	13	111091027	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	7392591	111091027	4078851	345	146303											
SLC7A7	9056	broad.mit.edu	37	chr14	23249263	23249263	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatgaaggttaagagacctGaaagaaaaataatactgatt	8	3	0	5			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23249263	C	C	23249263	1	2	182	0	1	0	0	0	0	0	0	0	14817	1305	45	4		4	SLC7A7	14	23249263	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08		23249263	84100277	346	146304											
CPNE6	9362	broad.mit.edu	37	chr14	24545604	24545604	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcttttggctttggggctcGaatcccccccaacttcgagg	11	13	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24545604	C	C	24545604	3	2	182	1	0	0	0	0	1	0	0	0	3848	1058	37	4	1136	4	CPNE6	14	24545604	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	1296341	24545604	82803936	347	146305											
PPP2R3C	55012	broad.mit.edu	37	chr14	35591050	35591050	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctccccacctcccccCtacctctaggagtttagggc	6	20	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35591050	G	G	35591050	1	3	182	0	1	0	0	0	0	0	0	0	12491	696	24	4		4	PPP2R3C	14	35591050	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	11045446	35591050	71758490	348	146306											
C14orf37	145407	broad.mit.edu	37	chr14	58605979	58605979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtgctatctccctcctcCtttctattttggggaaggcc	8	13	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58605979	A	A	58605979	3	1	182	1	0	0	0	0	1	0	0	0	1784	681	24	2	2254	2	C14orf37	14	58605979	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	23014929	58605979	48743561	349	146307											
C14orf149	112849	broad.mit.edu	37	chr14	59945949	59945949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgcatccacaaggtccCtggtctttgcagaacaaatg	9	12	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59945949	A	A	59945949	3	1	182	1	0	0	0	0	1	0	0	0	1765	681	24	2	451	2	C14orf149	14	59945949	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1339970	59945949	47403591	350	146308											
ZFP36L1	677	broad.mit.edu	37	chr14	69256498	69256498	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcaaagaggcttgccagctCctggctggagaaggcaaaag	15	9	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69256498	A	A	69256498	4	1	182	1	0	0	0	0	0	1	0	0	17772	864	30	3	251	3	ZFP36L1	14	69256498	Nonsense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	9310549	69256498	38093042	351	146309											
COQ6	51004	broad.mit.edu	37	chr14	74424915	74424915	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgtccatttcctatgGccgactccagcccttgggtt	10	14	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74424915	A	A	74424915	3	1	182	1	0	0	0	0	1	0	0	0	3781	1203	42	4	565	4	COQ6	14	74424915	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	5168417	74424915	32924625	352	146310											
NEK9	91754	broad.mit.edu	37	chr14	75580976	75580976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagtcaacttccatggccCgaattccttgcacgatcttc	7	13	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75580976	A	A	75580976	3	1	182	1	0	0	0	0	1	0	0	0	10426	652	23	1	2200	1	NEK9	14	75580976	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1156061	75580976	31768564	353	146311											
C14orf1	11161	broad.mit.edu	37	chr14	76121177	76121177	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaaggtaacaggtatgcctCgcatctgatttccaacaaaa	7	10	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76121177	T	T	76121177	1	4	182	0	1	0	0	0	0	0	0	0	1746	899	31	4		4	C14orf1	14	76121177	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	540201	76121177	31228363	354	146312											
TGFB3	7043	broad.mit.edu	37	chr14	76446949	76446949	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcatagtattccgactcGgtgttttcctgggtgcagcc	12	10	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76446949	T	T	76446949	2	4	182	1	0	0	0	0	0	0	0	1	15942	1103	39	1		1	TGFB3	14	76446949	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	325772	76446949	30902591	355	146313											
SPTLC2	9517	broad.mit.edu	37	chr14	78036662	78036662	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacagcttttagctcactctGactgcttttcaaaacaaaag	5	10	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78036662	C	C	78036662	1	2	182	0	1	0	0	0	0	0	0	0	15242	1305	45	4		4	SPTLC2	14	78036662	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1589713	78036662	29312878	356	146314											
C14orf102	55051	broad.mit.edu	37	chr14	90778937	90778937	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggcactttaaaaaatcttCcagtgacgcaggtggcattt	10	8	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90778937	G	G	90778937	1	3	182	0	1	0	0	0	0	0	0	0	1748	870	30	4		4	C14orf102	14	90778937	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	12742275	90778937	16570603	357	146315											
AK7	122481	broad.mit.edu	37	chr14	96954772	96954772	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaaaatgcttttccagttCttagaaaattctttttttgt	5	5	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96954772	T	T	96954772	1	4	182	0	1	0	0	0	0	0	0	0	444	928	32	4		4	AK7	14	96954772	3'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	6175835	96954772	10394768	358	146316											
AHNAK2	113146	broad.mit.edu	37	chr14	105409806	105409806	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcctccacctttggcgcGgtcacatccactgatgcctc	9	17	1	1	rs140129247	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105409806	T	T	105409806	2	4	182	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105409806	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	8455034	105409806	1939734	359	146317											
SNRPN	6638	broad.mit.edu	37	chr15	25207212	25207212	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accttgacaaatagttatttCatagattgatgcagtctacc	6	8	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25207212	A	A	25207212	1	1	182	0	1	0	0	0	0	0	0	0	14984	841	29	3		3	SNRPN	15	25207212	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08		25207212	77324180	360	146318											
SNRPN	6638	broad.mit.edu	37	chr15	25221561	25221561	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaggggccaccccccaaaGatgtaaggaagatgtagggc	15	9	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25221561	T	T	25221561	3	4	182	1	0	0	0	0	1	0	0	0	14984	942	33	3	275	3	SNRPN	15	25221561	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	14349	25221561	77309831	361	146319											
MGA	23269	broad.mit.edu	37	chr15	42042623	42042629	+	Frame_Shift_Del	DEL	ACTTACT	-	-													gaatggacattttcagggtcActtactgctacctggagaac							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42042629	-	-	42042623	7	5	182	1	0	1	0	1	0	0	0	0	9633	159	6	0	6880	0	MGA	15	42042623	Frame_Shift_Del	DEL	ACTTACT	TCGA-55-6712-01A-11D-1855-08	16821062	42042623	60488769	362	146320											
MGA	23269	broad.mit.edu	37	chr15	42052655	42052655	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtggtgaaatgagggatctCtttgagaaattaaagatcac	11	5	2	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42052655	G	G	42052655	2	3	182	1	0	0	0	0	0	0	0	1	9633	900	32	4		4	MGA	15	42052655	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	10032	42052655	60478737	363	146321											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42127270	42127270	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccagctgagcgccgcctGcccctgagcttcgtgctgga	13	15	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42127270	A	A	42127270	2	1	182	1	0	0	0	0	0	0	0	1	8025	1306	46	4		4	JMJD7-PLA2G4B	15	42127270	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	74615	42127270	60404122	364	146322											
EHD4	30844	broad.mit.edu	37	chr15	42211623	42211623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggaccacatgagggcccCgtagacccgcatcagctgct	12	14	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42211623	A	A	42211623	3	1	182	1	0	0	0	0	1	0	0	0	5020	652	23	1	928	1	EHD4	15	42211623	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	84353	42211623	60319769	365	146323											
ZSCAN29	146050	broad.mit.edu	37	chr15	43661216	43661216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctttcttgggtacacccCtgggctggggttccactgac	11	13	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43661216	A	A	43661216	3	1	182	1	0	0	0	0	1	0	0	0	18365	681	24	2	2146	2	ZSCAN29	15	43661216	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1449593	43661216	58870176	366	146324											
TRIM69	140691	broad.mit.edu	37	chr15	45052006	45052006	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttccagaaagctgaacctGggccagtacaaaggtcctat	9	10	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45052006	T	T	45052006	2	4	182	1	0	0	0	0	0	0	0	1	16667	1335	47	2		2	TRIM69	15	45052006	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	1390790	45052006	57479386	367	146325											
DUOX2	50506	broad.mit.edu	37	chr15	45397818	45397818	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctggggctggacccatctCcaaaaggcacaggtcatggc	12	12	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45397818	G	G	45397818	1	3	182	0	1	0	0	0	0	0	0	0	4841	870	30	4		4	DUOX2	15	45397818	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	345812	45397818	57133574	368	146326											
HDC	3067	broad.mit.edu	37	chr15	50557762	50557762	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggagtagcagcagggAagagggccagggatgcccgt	18	9	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50557762	C	C	50557762	1	2	182	0	1	0	0	0	0	0	0	0	7082	261	9	5		5	HDC	15	50557762	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	5159944	50557762	51973630	369	146327											
GCOM1	145781	broad.mit.edu	37	chr15	57913797	57913797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctaactagtatctttgtGggctacaggtgagagccact	10	9	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57913797	T	T	57913797	1	4	182	0	1	0	0	0	0	0	0	0	6367	1363	47	2		2	GCOM1	15	57913797	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	7356035	57913797	44617595	370	146328											
NOX5	79400	broad.mit.edu	37	chr15	69314573	69314573	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagaaactctccagatgtCttccaataatgtcgaagttt	8	9	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69314573	A	A	69314573	1	1	182	0	1	0	0	0	0	0	0	0	10654	928	32	3		3	NOX5	15	69314573	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	11400776	69314573	33216819	371	146329											
SGK269	79834	broad.mit.edu	37	chr15	77406519	77406519	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taacggtgctgcagaattttCacaatacaactgagggagtc	10	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77406519	G	G	77406519	2	3	182	1	0	0	0	0	0	0	0	1	14324	813	29	4		4	SGK269	15	77406519	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	8091946	77406519	25124873	372	146330											
KIAA1199	57214	broad.mit.edu	37	chr15	81171078	81171078	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtggctgctgggtgcccTgaccagagccctgagttgca	15	12	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81171078	G	G	81171078	2	3	182	1	0	0	0	0	0	0	0	1	8283	1567	55	5		5	KIAA1199	15	81171078	Silent	SNP	T	TCGA-55-6712-01A-11D-1855-08	3764559	81171078	21360314	373	146331											
PRC1	9055	broad.mit.edu	37	chr15	91512758	91512758	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagccagggtacccaccactCaggatgctgccgttgagctc	12	14	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91512758	G	G	91512758	2	3	182	1	0	0	0	0	0	0	0	1	12552	813	29	4		4	PRC1	15	91512758	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	10341680	91512758	11018634	374	146332											
SV2B	9899	broad.mit.edu	37	chr15	91769556	91769556	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagtgatggctattaccgCggcaatgagtccaacccaga	10	13	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91769556	T	T	91769556	2	4	182	1	0	0	0	0	0	0	0	1	15536	755	27	4		4	SV2B	15	91769556	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	256798	91769556	10761836	375	146333											
TARSL2	123283	broad.mit.edu	37	chr15	102241329	102241329	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattataaatgaaggctcctCtgggaaggaaaaaacagctt	9	6	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102241329	G	G	102241329	3	3	182	1	0	0	0	0	1	0	0	0	15680	913	32	4	1168	4	TARSL2	15	102241329	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	10471773	102241329	290063	376	146334											
TBC1D24	57465	broad.mit.edu	37	chr16	2569287	2569287	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatgtctgtcatgcggccgGagcagatcatgaagtccatc	11	12	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2569287	A	A	2569287	3	1	182	1	0	0	0	0	1	0	0	0	15733	1175	41	4		4	TBC1D24	16	2569287	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08		2569287	87785466	377	146335											
ZNF200	7752	broad.mit.edu	37	chr16	3273906	3273906	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtattacttctgctttcGggtcttacaggctgagtggg	12	9	2	1	rs138531369	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3273906	T	T	3273906	2	4	182	1	0	0	0	0	0	0	0	1	17888	1124	39	1		1	ZNF200	16	3273906	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	704619	3273906	87080847	378	146336											
MEFV	4210	broad.mit.edu	37	chr16	3293984	3293984	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgacaacaaggaaagacaagGaaccccctgcttagggccct	10	12	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3293984	A	A	3293984	1	1	182	0	1	0	0	0	0	0	0	0	9552	1189	41	4		4	MEFV	16	3293984	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	20078	3293984	87060769	379	146337											
ZNF434	54925	broad.mit.edu	37	chr16	3433615	3433615	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcagagtgccaataaactCctctggactttctctgtaaa	7	11	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3433615	T	T	3433615	3	4	182	1	0	0	0	0	1	0	0	0	18035	855	30	4	766	4	ZNF434	16	3433615	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	139631	3433615	86921138	380	146338											
BTBD12	84464	broad.mit.edu	37	chr16	3640666	3640666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacggctctgagatctctccCtgagttgatgagaagagctg	13	9	2	5	rs34903148		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3640666	A	A	3640666	3	1	182	1	0	0	0	0	1	0	0	0	1549	680	24	2	2547	2	BTBD12	16	3640666	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	207051	3640666	86714087	381	146339											
FAM18A	780776	broad.mit.edu	37	chr16	10867903	10867903	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatggagaataccttcctgGcttcaaagatccagtggctc	9	11	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10867903	T	T	10867903	3	4	182	1	0	0	0	0	1	0	0	0	5565	1203	42	3	340	3	FAM18A	16	10867903	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	7227237	10867903	79486850	382	146340											
MYH11	4629	broad.mit.edu	37	chr16	15854356	15854356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggatgaatggatggatGggtgggtgcatggatggata	19	1	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15854356	T	T	15854356	1	4	182	0	1	0	0	0	0	0	0	0	10125	1363	47	2		2	MYH11	16	15854356	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	4986453	15854356	74500397	383	146341											
ACSM2B	348158	broad.mit.edu	37	chr16	20563423	20563423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaagtgtgcaaacctcGggctcactctgaataactgc	9	10	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20563423	T	T	20563423	1	4	182	0	1	0	0	0	0	0	0	0	184	1131	39	1		1	ACSM2B	16	20563423	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	4709067	20563423	69791330	384	146342											
ACSM1	116285	broad.mit.edu	37	chr16	20648732	20648732	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggccttccccatgaaaccCggcttgatcttcattcccca	7	16	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20648732	T	T	20648732	2	4	182	1	0	0	0	0	0	0	0	1	182	639	23	4		4	ACSM1	16	20648732	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	85309	20648732	69706021	385	146343											
DNAH3	55567	broad.mit.edu	37	chr16	20952919	20952919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaagccctacaggctgtgGctttggataaactttaagta	10	8	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20952919	T	T	20952919	1	4	182	0	1	0	0	0	0	0	0	0	4643	1218	42	3		3	DNAH3	16	20952919	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	304187	20952919	69401834	386	146344											
TNRC6A	27327	broad.mit.edu	37	chr16	24820840	24820840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccaaaaaaaaaaaaaaaaCacacacacctgcagaatact	2	10	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24820840	A	A	24820840	1	1	182	0	1	0	0	0	0	0	0	0	16463	493	17	3		3	TNRC6A	16	24820840	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3867921	24820840	65533913	387	146345											
ITGAD	3681	broad.mit.edu	37	chr16	31408920	31408920	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtctgcccttgcagtccGccctgaggccgtgaacatgt	12	14	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31408920	A	A	31408920	3	1	182	1	0	0	0	0	1	0	0	0	7954	1087	38	4	259	4	ITGAD	16	31408920	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	6588080	31408920	58945833	388	146346											
SALL1	6299	broad.mit.edu	37	chr16	51174513	51174513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggtttggtgtctagccaGctggtgactggcttctctgg	14	9	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51174513	T	T	51174513	3	4	182	1	0	0	0	0	1	0	0	0	13921	962	34	3	2362	3	SALL1	16	51174513	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	19765593	51174513	39180240	389	146347											
CHD9	80205	broad.mit.edu	37	chr16	53348933	53348933	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagcacccgggttatgtgGaagatttgggagcttttatt	14	5	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53348933	A	A	53348933	3	1	182	1	0	0	0	0	1	0	0	0	3363	1175	41	4	7651	4	CHD9	16	53348933	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	2174420	53348933	37005820	390	146348											
IRX6	79190	broad.mit.edu	37	chr16	55361654	55361654	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatcaccaagatgaccctCacccaggtgtccacctggtt	7	15	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55361654	T	T	55361654	2	4	182	1	0	0	0	0	0	0	0	1	7918	813	29	4		4	IRX6	16	55361654	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2012721	55361654	34993099	391	146349											
CES1	1066	broad.mit.edu	37	chr16	55860016	55860016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctgccccagaagatgcGgggtactggcactgacacgc	12	13	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55860016	T	T	55860016	1	4	182	0	1	0	0	0	0	0	0	0	3299	1131	39	1		1	CES1	16	55860016	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	498362	55860016	34494737	392	146350											
SLC12A3	6559	broad.mit.edu	37	chr16	56938352	56938352	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattgtgctggattactccCgagacgctgctctcatcgtc	10	12	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56938352	A	A	56938352	2	1	182	1	0	0	0	0	0	0	0	1	14497	644	23	1		1	SLC12A3	16	56938352	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1078336	56938352	33416401	393	146351											
NLRC5	84166	broad.mit.edu	37	chr16	57077562	57077562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccctgtcccccatccCacaggtcatctgctcccacg	6	22	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57077562	A	A	57077562	1	1	182	0	1	0	0	0	0	0	0	0	10565	609	21	2		2	NLRC5	16	57077562	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	139210	57077562	33277191	394	146352											
NDRG4	65009	broad.mit.edu	37	chr16	58538633	58538633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggggactggggggaaccCttcagccttgaggaagtgtc	18	8	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58538633	A	A	58538633	1	1	182	0	1	0	0	0	0	0	0	0	10349	696	24	2		2	NDRG4	16	58538633	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1461071	58538633	31816120	395	146353											
KIAA0895L	653319	broad.mit.edu	37	chr16	67210547	67210547	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccagggaggctggcaagGgacacaaacactttgatgtt	12	10	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67210547	T	T	67210547	1	4	182	0	1	0	0	0	0	0	0	0	8268	1247	43	2		2	KIAA0895L	16	67210547	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	8671914	67210547	23144206	396	146354											
SLC7A6OS	84138	broad.mit.edu	37	chr16	68344680	68344680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggaagacattattctcCgccgctctctccaaaccctc	6	15	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68344680	A	A	68344680	2	1	182	1	0	0	0	0	0	0	0	1	14816	639	23	1		1	SLC7A6OS	16	68344680	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1134133	68344680	22010073	397	146355											
CIRH1A	84916	broad.mit.edu	37	chr16	69189791	69189791	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagggtcctgagaacattatCtgtagctgtatctccccatg	9	11	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69189791	G	G	69189791	3	3	182	1	0	0	0	0	1	0	0	0	3465	903	32	4	1220	4	CIRH1A	16	69189791	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	845111	69189791	21164962	398	146356											
SF3B3	23450	broad.mit.edu	37	chr16	70590035	70590035	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgaattggagcatctagAcccatccctctgtagttttg	11	9	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70590035	G	G	70590035	1	3	182	0	1	0	0	0	0	0	0	0	14265	290	10	5		5	SF3B3	16	70590035	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	1400244	70590035	19764718	399	146357											
ACSF3	197322	broad.mit.edu	37	chr16	89187116	89187116	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcccgcacgtggcacacGggagctcagcgggatccgag	15	14	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89187116	T	T	89187116	1	4	182	0	1	0	0	0	0	0	0	0	176	1131	39	1		1	ACSF3	16	89187116	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	18597081	89187116	1167637	400	146358											
ZZEF1	23140	broad.mit.edu	37	chr17	3955340	3955340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacattgcagttcatcctcCggcctatgatcaaaccctgg	7	13	2	1	rs147734356		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3955340	A	A	3955340	3	1	182	1	0	0	0	0	1	0	0	0	18384	652	23	1	3444	1	ZZEF1	17	3955340	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08		3955340	77239870	401	146359											
ENO3	2027	broad.mit.edu	37	chr17	4858835	4858835	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagtcgcctgatgatccCgcacggcacatcactgggga	11	13	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4858835	A	A	4858835	2	1	182	1	0	0	0	0	0	0	0	1	5165	639	23	1		1	ENO3	17	4858835	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	903495	4858835	76336375	402	146360											
GPR172B	55065	broad.mit.edu	37	chr17	4936694	4936694	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggacctgttggggatgagCagagactcagggctggctgt	18	7	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4936694	T	T	4936694	1	4	182	0	1	0	0	0	0	0	0	0	6735	725	25	4		4	GPR172B	17	4936694	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	77859	4936694	76258516	403	146361											
SLC13A5	284111	broad.mit.edu	37	chr17	6599238	6599238	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttcttgctctctagccCgcagccccaggactttttaa	7	13	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6599238	A	A	6599238	3	1	182	1	0	0	0	0	1	0	0	0	14508	652	23	1	868	1	SLC13A5	17	6599238	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1662544	6599238	74595972	404	146362											
TP53	7157	broad.mit.edu	37	chr17	7574012	7574012	+	Frame_Shift_Del	DEL	C	-	-													attcagctctcggaacatctCgaagcgctcacgcccacgga					rs17882252		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7574012	-	-	7574012	7	5	182	1	0	1	0	1	0	0	0	0	16505	893	31	0	174	0	TP53	17	7574012	Frame_Shift_Del	DEL	C	TCGA-55-6712-01A-11D-1855-08	974774	7574012	73621198	405	146363											
DNAH2	146754	broad.mit.edu	37	chr17	7637925	7637925	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacctgtctggcatcagtAagcagctggtgaagaaggga	15	7	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7637925	G	G	7637925	3	3	182	1	0	0	0	0	1	0	0	0	4642	363	13	5	899	5	DNAH2	17	7637925	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	63913	7637925	73557285	406	146364											
MYH8	4626	broad.mit.edu	37	chr17	10295387	10295387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggcatgatggcaggtgGgcctggggtaaacttgatca	15	6	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10295387	T	T	10295387	1	4	182	0	1	0	0	0	0	0	0	0	10135	1247	43	2		2	MYH8	17	10295387	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	2657462	10295387	70899823	407	146365											
MYH4	4622	broad.mit.edu	37	chr17	10354166	10354166	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtttgcctcgggatagCtgagaaaccatagcatcttt	10	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10354166	T	T	10354166	2	4	182	1	0	0	0	0	0	0	0	1	10131	796	28	4		4	MYH4	17	10354166	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	58779	10354166	70841044	408	146366											
ELAC2	60528	broad.mit.edu	37	chr17	12897821	12897821	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagggtggcatctttccCtggagaagcagcacaaggat	14	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12897821	A	A	12897821	5	1	182	1	0	0	0	0	0	0	1	0	5089	695	24	2	463	2	ELAC2	17	12897821	Splice_Site	SNP	C	TCGA-55-6712-01A-11D-1855-08	2543655	12897821	68297389	409	146367											
ZNF286A	57335	broad.mit.edu	37	chr17	15619791	15619791	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtaatgattgtggtgaactCttcacctaccattcagtgct	8	9	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15619791	G	G	15619791	2	3	182	1	0	0	0	0	0	0	0	1	17949	900	32	4		4	ZNF286A	17	15619791	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2721970	15619791	65575419	410	146368											
NCOR1	9611	broad.mit.edu	37	chr17	15964752	15964752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactttgagagccacgttcCctcgcatccttgtccgaggc	10	14	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15964752	A	A	15964752	3	1	182	1	0	0	0	0	1	0	0	0	10330	622	22	2	1518	2	NCOR1	17	15964752	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	344961	15964752	65230458	411	146369											
ATAD5	79915	broad.mit.edu	37	chr17	29185093	29185093	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacgttgatactgatttatGatggacagaaagtggttggt	12	3	0	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29185093	C	C	29185093	1	2	182	0	1	0	0	0	0	0	0	0	1080	1305	45	4		4	ATAD5	17	29185093	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	13220341	29185093	52010117	412	146370											
CCT6B	10693	broad.mit.edu	37	chr17	33259312	33259312	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctactccattaactatcaGataatatgggcaatttgtaa	6	7	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33259312	A	A	33259312	1	1	182	0	1	0	0	0	0	0	0	0	2988	957	33	4		4	CCT6B	17	33259312	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	4074219	33259312	47935898	413	146371											
CCL16	6360	broad.mit.edu	37	chr17	34304500	34304500	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgatcattgttctgcttCtctcaatgtgactggctagt	8	8	4	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34304500	T	T	34304500	1	4	182	0	1	0	0	0	0	0	0	0	2915	928	32	4		4	CCL16	17	34304500	3'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	1045188	34304500	46890710	414	146372											
GPR179	440435	broad.mit.edu	37	chr17	36484439	36484439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatctggagaagggtttgGggtctctctgtgtcttgagg	16	6	4	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36484439	T	T	36484439	2	4	182	1	0	0	0	0	0	0	0	1	6739	1219	43	2		2	GPR179	17	36484439	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	2179939	36484439	44710771	415	146373											
NR1D1	9572	broad.mit.edu	37	chr17	38251279	38251279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaactctaccacctccCgcacagcgggcgtgaagctc	10	16	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38251279	A	A	38251279	3	1	182	1	0	0	0	0	1	0	0	0	10710	652	23	1	513	1	NR1D1	17	38251279	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1766840	38251279	42943931	416	146374											
NAGLU	4669	broad.mit.edu	37	chr17	40694954	40694954	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catgggaagccatgacctggGatagacagtcgtctgtagag	14	8	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40694954	C	C	40694954	1	2	182	0	1	0	0	0	0	0	0	0	10237	1189	41	4		4	NAGLU	17	40694954	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	2443675	40694954	40500256	417	146375											
VPS25	84313	broad.mit.edu	37	chr17	40925994	40925994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcccccttttacccatGgtaggcagattcccacccaa	7	17	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40925994	T	T	40925994	1	4	182	0	1	0	0	0	0	0	0	0	17323	1363	47	2		2	VPS25	17	40925994	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	231040	40925994	40269216	418	146376											
VAT1	10493	broad.mit.edu	37	chr17	41170820	41170820	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcacccggtctcctgccttGaagaacagaagagtatcatt	8	11	3	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41170820	C	C	41170820	1	2	182	0	1	0	0	0	0	0	0	0	17256	1305	45	4		4	VAT1	17	41170820	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	244826	41170820	40024390	419	146377											
MPP3	4356	broad.mit.edu	37	chr17	41905172	41905172	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccaccacaacagcccctGagtgctcgtcccgccggatg	11	17	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41905172	A	A	41905172	3	1	182	1	0	0	0	0	1	0	0	0	9829	1294	45	4	1339	4	MPP3	17	41905172	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	734352	41905172	39290038	420	146378											
ITGB3	3690	broad.mit.edu	37	chr17	45369787	45369787	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggacgaatgcagccccCgggagggtcagcccgtctgc	15	14	2	0	rs150138754		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45369787	A	A	45369787	2	1	182	1	0	0	0	0	0	0	0	1	7965	643	23	1		1	ITGB3	17	45369787	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	3464615	45369787	35825423	421	146379											
BRIP1	83990	broad.mit.edu	37	chr17	59763162	59763162	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaaatataatgaaagacttCtctatcaaaggtaaatggga	7	5	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59763162	G	G	59763162	1	3	182	0	1	0	0	0	0	0	0	0	1523	928	32	4		4	BRIP1	17	59763162	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	14393375	59763162	21432048	422	146380											
DDX5	1655	broad.mit.edu	37	chr17	62498280	62498280	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcatttgaaatatttacCatttagaacccagtcacgct	4	10	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62498280	A	A	62498280	4	1	182	1	0	0	0	0	0	1	0	0	4400	608	21	2	704	2	DDX5	17	62498280	Nonsense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2735118	62498280	18696930	423	146381											
HELZ	9931	broad.mit.edu	37	chr17	65144729	65144729	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagttctcacacaggagaatCctacatgggaactcagcagg	10	10	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65144729	G	G	65144729	3	3	182	1	0	0	0	0	1	0	0	0	7116	854	30	4	3307	4	HELZ	17	65144729	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2646449	65144729	16050481	424	146382											
ARSG	22901	broad.mit.edu	37	chr17	66268933	66268933	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaaaagtcaaaaaagcCaatgagacccacatactgct	7	9	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66268933	T	T	66268933	1	4	182	0	1	0	0	0	0	0	0	0	996	609	21	4		4	ARSG	17	66268933	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1124204	66268933	14926277	425	146383											
ABCA6	23460	broad.mit.edu	37	chr17	67079099	67079099	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtttccttcacttttagctCtagaatgtaatccttgccaa	5	11	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67079099	G	G	67079099	3	3	182	1	0	0	0	0	1	0	0	0	36	922	32	4	338	4	ABCA6	17	67079099	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	810166	67079099	14116111	426	146384											
ABCA10	10349	broad.mit.edu	37	chr17	67170943	67170943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagaatagaagggatagaGgaagggatcttagtttgaaa	13	2	1	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67170943	A	A	67170943	1	1	182	0	1	0	0	0	0	0	0	0	29	1015	35	4		4	ABCA10	17	67170943	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	91844	67170943	14024267	427	146385											
TRIM47	91107	broad.mit.edu	37	chr17	73870608	73870608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggacttcttgaggggccCgatctgcaagtgggcgtcca	15	11	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73870608	A	A	73870608	3	1	182	1	0	0	0	0	1	0	0	0	16647	652	23	1	47	1	TRIM47	17	73870608	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	6699665	73870608	7324602	428	146386											
QRICH2	84074	broad.mit.edu	37	chr17	74287426	74287426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctatttggatccaaacCttcctggccatgctgatcag	8	11	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74287426	A	A	74287426	3	1	182	1	0	0	0	0	1	0	0	0	12988	681	24	2	2171	2	QRICH2	17	74287426	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	416818	74287426	6907784	429	146387											
TMC8	147138	broad.mit.edu	37	chr17	76130523	76130523	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgatgcagcagcagaccCgggcccagacggcctgccgc	14	16	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76130523	A	A	76130523	2	1	182	1	0	0	0	0	0	0	0	1	16114	643	23	1		1	TMC8	17	76130523	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1843097	76130523	5064687	430	146388											
CBX2	84733	broad.mit.edu	37	chr17	77755652	77755652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccagcacccccttggcGtagggggcaggcagagggag	16	14	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77755652	T	T	77755652	1	4	182	0	1	0	0	0	0	0	0	0	2744	1145	40	3		3	CBX2	17	77755652	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1625129	77755652	3439558	431	146389											
BAIAP2	10458	broad.mit.edu	37	chr17	79060372	79060372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcagaagtactcggacaagGagctgcaggtaggcccgcca	13	12	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79060372	A	A	79060372	3	1	182	1	0	0	0	0	1	0	0	0	1306	1175	41	4	503	4	BAIAP2	17	79060372	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	1304720	79060372	2134838	432	146390											
CLUL1	27098	broad.mit.edu	37	chr18	641487	641487	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagggcaatttggctgggtGtctgaactggcaaaccaggc	15	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	641487	A	A	641487	2	1	182	1	0	0	0	0	0	0	0	1	3602	1364	48	4		4	CLUL1	18	641487	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08		641487	77435761	433	146391											
KIAA0802	23255	broad.mit.edu	37	chr18	8813163	8813163	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggagaaggtggaacttctcGaccgcctggacagagatcgg	16	9	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8813163	A	A	8813163	3	1	182	1	0	0	0	0	1	0	0	0	8264	1058	37	4	2829	4	KIAA0802	18	8813163	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	8171676	8813163	69264085	434	146392											
DSC3	1825	broad.mit.edu	37	chr18	28588282	28588282	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcatatgccttatagccGttgatctttgaccccactgc	9	12	2	2	rs138254140		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28588282	A	A	28588282	2	1	182	1	0	0	0	0	0	0	0	1	4807	1136	40	4		4	DSC3	18	28588282	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	19775119	28588282	49488966	435	146393											
B4GALT6	9331	broad.mit.edu	37	chr18	29206997	29206997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttctcctccccatccCcagaaggcattaggaaaacc	5	16	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29206997	A	A	29206997	3	1	182	1	0	0	0	0	1	0	0	0	1280	624	22	2	296	2	B4GALT6	18	29206997	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	618715	29206997	48870251	436	146394											
ZNF397OS	100101467	broad.mit.edu	37	chr18	32834195	32834195	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catttcccttttgcttcttaGagttgtccagacctcccaaa	5	13	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32834195	C	C	32834195	3	2	182	1	0	0	0	0	1	0	0	0	18011	956	33	4	784	4	ZNF397OS	18	32834195	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	3627198	32834195	45243053	437	146395											
SETBP1	26040	broad.mit.edu	37	chr18	42281614	42281614	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggcaaacttcacagagggAagtctgaagctaaagattca	11	7	3	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42281614	T	T	42281614	2	4	182	1	0	0	0	0	0	0	0	1	14242	233	9	5		5	SETBP1	18	42281614	Silent	SNP	A	TCGA-55-6712-01A-11D-1855-08	9447419	42281614	35795634	438	146396											
SLC14A1	6563	broad.mit.edu	37	chr18	43329823	43329823	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accacaaaaaattccaacatCtacaagatgcccctcagtaa	3	13	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43329823	G	G	43329823	3	3	182	1	0	0	0	0	1	0	0	0	14509	903	32	4	1279	4	SLC14A1	18	43329823	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1048209	43329823	34747425	439	146397											
TCF4	6925	broad.mit.edu	37	chr18	53254359	53254359	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgatgcattttagcaaaatCacacaaacctagaaacatgg	7	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53254359	G	G	53254359	1	3	182	0	1	0	0	0	0	0	0	0	15817	841	29	4		4	TCF4	18	53254359	5'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	9924536	53254359	24822889	440	146398											
SERPINB8	5271	broad.mit.edu	37	chr18	61654402	61654402	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtggtcaggaattccCggtgcagcagaatggagcca	14	10	1	1	rs150328649	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61654402	A	A	61654402	2	1	182	1	0	0	0	0	0	0	0	1	14220	643	23	1		1	SERPINB8	18	61654402	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	8400043	61654402	16422846	441	146399											
DOK6	220164	broad.mit.edu	37	chr18	67365639	67365639	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccattcttcgtctcttcacaGagagattcaacgtgtatctt	6	11	5	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67365639	C	C	67365639	5	2	182	1	0	0	0	0	0	0	1	0	4741	956	33	4	427	4	DOK6	18	67365639	Splice_Site	SNP	G	TCGA-55-6712-01A-11D-1855-08	5711237	67365639	10711609	442	146400											
SALL3	27164	broad.mit.edu	37	chr18	76757145	76757145	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcatcccccagctcccCgtgagtcttgggggcagcgc	15	16	1	1	rs148335210	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76757145	A	A	76757145	2	1	182	1	0	0	0	0	0	0	0	1	13923	639	23	1		1	SALL3	18	76757145	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	9391506	76757145	1320103	443	146401											
C19orf28	126321	broad.mit.edu	37	chr19	3546137	3546137	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccaccttatccaagaagctCatggagccgtacacgaacgc	9	14	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3546137	G	G	3546137	3	3	182	1	0	0	0	0	1	0	0	0	1936	826	29	4	437	4	C19orf28	19	3546137	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08		3546137	55582846	444	146402											
SIRT6	51548	broad.mit.edu	37	chr19	4180714	4180714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattcccagatgtgtgtgGctcgcagggaagcctctggc	13	12	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4180714	T	T	4180714	1	4	182	0	1	0	0	0	0	0	0	0	14455	1218	42	3		3	SIRT6	19	4180714	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	634577	4180714	54948269	445	146403											
FSD1	79187	broad.mit.edu	37	chr19	4306074	4306074	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagtcctggggaggtaagggGaggggaggaagctggagggt	23	4	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4306074	C	C	4306074	1	2	182	0	1	0	0	0	0	0	0	0	6130	1189	41	4		4	FSD1	19	4306074	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	125360	4306074	54822909	446	146404											
C19orf70	125988	broad.mit.edu	37	chr19	5680448	5680448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcggggactcgggtcCcctccggcgcccccacgcac	11	19	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5680448	A	A	5680448	1	1	182	0	1	0	0	0	0	0	0	0	1966	638	22	2		2	C19orf70	19	5680448	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1374374	5680448	53448535	447	146405											
TUBB4	10382	broad.mit.edu	37	chr19	6495313	6495313	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcgtccatgccctcgccCgtgtaccagtgcaagaaggc	10	15	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6495313	A	A	6495313	2	1	182	1	0	0	0	0	0	0	0	1	16884	639	23	1		1	TUBB4	19	6495313	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	814865	6495313	52633670	448	146406											
CD209	30835	broad.mit.edu	37	chr19	7812414	7812414	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtcaccccactctcccCcagtgtccagaactcctggg	7	18	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7812414	A	A	7812414	1	1	182	0	1	0	0	0	0	0	0	0	3014	638	22	2		2	CD209	19	7812414	5'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	1317101	7812414	51316569	449	146407											
MUC16	94025	broad.mit.edu	37	chr19	9048000	9048000	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacccagaactagtgaccaGtgaagtcaccagcccttgta	9	12	1	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9048000	C	C	9048000	3	2	182	1	0	0	0	0	1	0	0	0	10067	1020	36	4	10212	4	MUC16	19	9048000	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	1235586	9048000	50080983	450	146408											
MUC16	94025	broad.mit.edu	37	chr19	9071029	9071029	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtttgaatttggttagtctGagagatattaggagttgatg	13	1	1	4			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9071029	A	A	9071029	4	1	182	1	0	0	0	0	0	1	0	0	10067	1299	45	4	27434	4	MUC16	19	9071029	Nonsense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	23029	9071029	50057954	451	146409											
MUC16	94025	broad.mit.edu	37	chr19	9071370	9071370	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacaggaagaggagaggagGggatgctctgtggtgatgtg	19	4	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9071370	A	A	9071370	3	1	182	1	0	0	0	0	1	0	0	0	10067	1232	43	4	27775	4	MUC16	19	9071370	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	341	9071370	50057613	452	146410											
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10220376	10220376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcccaggagctggacttcCgccactagtgagtgtcccag	11	14	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10220376	A	A	10220376	3	1	182	1	0	0	0	0	1	0	0	0	12385	652	23	1	605	1	PPAN-P2RY11	19	10220376	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1149006	10220376	48908607	453	146411											
ZNF700	90592	broad.mit.edu	37	chr19	12060174	12060174	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacactggagagaaaccCtatgaatgtaaggaatgtgg	11	7	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12060174	A	A	12060174	2	1	182	1	0	0	0	0	0	0	0	1	18231	668	24	2		2	ZNF700	19	12060174	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1839798	12060174	47068809	454	146412											
ZNF878	729747	broad.mit.edu	37	chr19	12155687	12155687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaaactgaatgctttccCacactgcttacattcatagg	8	10	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12155687	A	A	12155687	3	1	182	1	0	0	0	0	1	0	0	0	18325	594	21	2	1070	2	ZNF878	19	12155687	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	95513	12155687	46973296	455	146413											
MAST1	22983	broad.mit.edu	37	chr19	12982038	12982038	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgggtggaacttaggCgggaggggcacagatgagga	20	5	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12982038	T	T	12982038	1	4	182	0	1	0	0	0	0	0	0	0	9416	783	27	4		4	MAST1	19	12982038	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	826351	12982038	46146945	456	146414											
TRMT1	55621	broad.mit.edu	37	chr19	13220550	13220550	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actatgaccttcaagaccctCttgctcctttgcctcccctg	5	17	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13220550	T	T	13220550	1	4	182	0	1	0	0	0	0	0	0	0	16686	928	32	4		4	TRMT1	19	13220550	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	238512	13220550	45908433	457	146415											
NACC1	112939	broad.mit.edu	37	chr19	13249157	13249158	+	Missense_Mutation	DNP	GC	TT	TT													ccggacatgatgggtgtggaGcatggcttcgagaccgccag							TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	13249158	TT	TT	13249157	3	4	182	1	0	0	0	0	1	0	0	0	10229	962	34	3	1539	3	NACC1	19	13249157	Missense_Mutation	DNP	GC	TCGA-55-6712-01A-11D-1855-08	28607	13249157	45879826	458	146416											
C19orf57	79173	broad.mit.edu	37	chr19	14000978	14000978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtgttccttttggccacCgtcacctggaaccctgtctg	10	13	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14000978	A	A	14000978	3	1	182	1	0	0	0	0	1	0	0	0	1958	652	23	1	1234	1	C19orf57	19	14000978	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	751821	14000978	45128005	459	146417											
ZNF333	84449	broad.mit.edu	37	chr19	14830168	14830168	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaaatataaacacatggGgctatgactttccctcgtaa	7	8	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14830168	A	A	14830168	1	1	182	0	1	0	0	0	0	0	0	0	17976	1247	43	4		4	ZNF333	19	14830168	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	829190	14830168	44298815	460	146418											
CYP4F2	8529	broad.mit.edu	37	chr19	15997064	15997064	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctcaccctcaaacataaAggtgtcagcttctgctctta	6	14	5	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15997064	G	G	15997064	3	3	182	1	0	0	0	0	1	0	0	0	4221	72	3	5	613	5	CYP4F2	19	15997064	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	1166896	15997064	43131919	461	146419											
NWD1	284434	broad.mit.edu	37	chr19	16890131	16890131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggaactgagatcattgCtgttgcctctgtgtggctgc	12	10	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16890131	A	A	16890131	1	1	182	0	1	0	0	0	0	0	0	0	10876	812	28	3		3	NWD1	19	16890131	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	893067	16890131	42238852	462	146420											
NWD1	284434	broad.mit.edu	37	chr19	16918385	16918385	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtaagtcattctcatttttCttccctggcaggcgaggaac	9	10	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16918385	G	G	16918385	1	3	182	0	1	0	0	0	0	0	0	0	10876	928	32	4		4	NWD1	19	16918385	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	28254	16918385	42210598	463	146421											
HAPLN4	404037	broad.mit.edu	37	chr19	19377144	19377144	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtctgtatctggctttgtCtcccctagactagggaatcc	10	11	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19377144	G	G	19377144	1	3	182	0	1	0	0	0	0	0	0	0	7023	928	32	4		4	HAPLN4	19	19377144	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	2458759	19377144	39751839	464	146422											
ZNF257	113835	broad.mit.edu	37	chr19	22257815	22257815	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggagcaaacacctcttcaAgtttctataaactagtttca	5	9	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22257815	T	T	22257815	1	4	182	0	1	0	0	0	0	0	0	0	17926	87	3	5		5	ZNF257	19	22257815	Intron	SNP	A	TCGA-55-6712-01A-11D-1855-08	2880671	22257815	36871168	465	146423											
TSHZ3	57616	broad.mit.edu	37	chr19	31770030	31770030	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaactccaccagggtgtcGtaggcagcgctgcagtcctt	12	13	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31770030	A	A	31770030	2	1	182	1	0	0	0	0	0	0	0	1	16750	1140	40	4		4	TSHZ3	19	31770030	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	9512215	31770030	27358953	466	146424											
ZNF792	126375	broad.mit.edu	37	chr19	35449408	35449408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccacactcaccacaccCgtgaggccgctcgccagtgt	8	18	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35449408	A	A	35449408	3	1	182	1	0	0	0	0	1	0	0	0	18293	652	23	1	551	1	ZNF792	19	35449408	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	3679378	35449408	23679575	467	146425											
ZNF566	84924	broad.mit.edu	37	chr19	36940775	36940775	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgccgattacattcccaatCatctctgaaactggagcact	6	13	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36940775	T	T	36940775	3	4	182	1	0	0	0	0	1	0	0	0	18124	826	29	4	899	4	ZNF566	19	36940775	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1491367	36940775	22188208	468	146426											
CATSPERG	57828	broad.mit.edu	37	chr19	38858346	38858346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctggtggtgggtggcGggcccacactggacagcctc	16	12	1	0	rs148888831	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38858346	T	T	38858346	3	4	182	1	0	0	0	0	1	0	0	0	2718	1116	39	1	2954	1	CATSPERG	19	38858346	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	1917571	38858346	20270637	469	146427											
SPTBN4	57731	broad.mit.edu	37	chr19	41078030	41078030	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacggtggggaaccgctgctCagcctgcacaaggccaccag	13	15	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41078030	G	G	41078030	2	3	182	1	0	0	0	0	0	0	0	1	15239	813	29	4		4	SPTBN4	19	41078030	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	2219684	41078030	18050953	470	146428											
TMEM145	284339	broad.mit.edu	37	chr19	42820542	42820542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcctaagggaggaggcGggattcagactgcctggatg	18	7	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42820542	T	T	42820542	1	4	182	0	1	0	0	0	0	0	0	0	16182	1131	39	1		1	TMEM145	19	42820542	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1742512	42820542	16308441	471	146429											
PSG3	5671	broad.mit.edu	37	chr19	43233350	43233350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagagcaagcatagagccCgctatgctttgtagtaatct	9	9	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43233350	A	A	43233350	3	1	182	1	0	0	0	0	1	0	0	0	12762	652	23	1	126	1	PSG3	19	43233350	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	412808	43233350	15895633	472	146430											
PNMAL2	57469	broad.mit.edu	37	chr19	46997853	46997853	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcagggccactaagtcGgggacaccatttttgtcttc	11	12	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46997853	T	T	46997853	2	4	182	1	0	0	0	0	0	0	0	1	12253	1103	39	1		1	PNMAL2	19	46997853	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	3764503	46997853	12131130	473	146431											
CPT1C	126129	broad.mit.edu	37	chr19	50200543	50200543	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaacaggggctcagaggaGagggcagatgattcaatgga	16	6	2	5			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50200543	A	A	50200543	1	1	182	0	1	0	0	0	0	0	0	0	3865	957	33	4		4	CPT1C	19	50200543	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	3202690	50200543	8928440	474	146432											
ACPT	93650	broad.mit.edu	37	chr19	51297983	51297983	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggagtcagaagcccttttCtccaggctttaagatcaatg	10	9	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51297983	T	T	51297983	1	4	182	0	1	0	0	0	0	0	0	0	168	928	32	4		4	ACPT	19	51297983	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1097440	51297983	7831000	475	146433											
KLK7	5650	broad.mit.edu	37	chr19	51480790	51480790	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttaattaactcagtgtggCgttagcgatgctttttcatg	10	6	2	0	rs112139149	byFrequency;by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51480790	T	T	51480790	1	4	182	0	1	0	0	0	0	0	0	0	8480	783	27	4		4	KLK7	19	51480790	3'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	182807	51480790	7648193	476	146434											
KLK10	5655	broad.mit.edu	37	chr19	51518192	51518192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctcgtcacagaccaggGggcctccagagtcactctgg	14	13	4	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51518192	T	T	51518192	3	4	182	1	0	0	0	0	1	0	0	0	8469	1232	43	2	139	2	KLK10	19	51518192	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	37402	51518192	7610791	477	146435											
PPP2R1A	5518	broad.mit.edu	37	chr19	52716118	52716118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctggccctctgctctccCgtccttctggtggttcctgc	9	17	3	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52716118	A	A	52716118	1	1	182	0	1	0	0	0	0	0	0	0	12483	667	23	1		1	PPP2R1A	19	52716118	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1197926	52716118	6412865	478	146436											
ZNF880	400713	broad.mit.edu	37	chr19	52876544	52876544	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctggtgtatttttgcatTttgtcgtgtgcctcttagca	10	9	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52876544	C	C	52876544	1	2	182	0	1	0	0	0	0	0	0	0	18326	1856	64	5		5	ZNF880	19	52876544	Intron	SNP	T	TCGA-55-6712-01A-11D-1855-08	160426	52876544	6252439	479	146437											
ZNF534	147658	broad.mit.edu	37	chr19	52937149	52937149	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttacaactgtcttctcattCtgtttgaagataagtactct	5	9	4	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52937149	G	G	52937149	1	3	182	0	1	0	0	0	0	0	0	0	18100	928	32	4		4	ZNF534	19	52937149	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	60605	52937149	6191834	480	146438											
KIR2DL3	3804	broad.mit.edu	37	chr19	55278478	55278478	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccctccgagctcttttgttGacttccgtctcctacacatg	7	15	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55278478	A	A	55278478	1	1	182	0	1	0	0	0	0	0	0	0	8388	1305	45	4		4	KIR2DL3	19	55278478	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	2341329	55278478	3850505	481	146439											
ZSCAN22	342945	broad.mit.edu	37	chr19	58850179	58850179	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggttgtccacacaggggcGaagccccatgagtgtaagga	14	10	0	1	rs139283341	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58850179	A	A	58850179	2	1	182	1	0	0	0	0	0	0	0	1	18363	1045	37	4		4	ZSCAN22	19	58850179	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	3571701	58850179	278804	482	146440											
NOP56	10528	broad.mit.edu	37	chr20	2636241	2636241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacacttggtttttcctagGcatggacatatctgccattg	8	10	2	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2636241	T	T	2636241	3	4	182	1	0	0	0	0	1	0	0	0	10634	1217	42	3	784	3	NOP56	20	2636241	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08		2636241	60389279	483	146441											
IDH3B	3420	broad.mit.edu	37	chr20	2640290	2640290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacctcccgctaatttccCcacctgctcctcctcacgac	4	21	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2640290	A	A	2640290	1	1	182	0	1	0	0	0	0	0	0	0	7567	638	22	2		2	IDH3B	20	2640290	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	4049	2640290	60385230	484	146442											
GPCPD1	56261	broad.mit.edu	37	chr20	5528362	5528362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacatggatatcagactccCcacacaaagatgagggaaca	8	12	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5528362	A	A	5528362	3	1	182	1	0	0	0	0	1	0	0	0	6668	623	22	2	58	2	GPCPD1	20	5528362	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	2888072	5528362	57497158	485	146443											
SNRPB2	6629	broad.mit.edu	37	chr20	16720905	16720905	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtttgatatagtaagatttCacatgcctagcttacgatgc	8	7	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16720905	G	G	16720905	1	3	182	0	1	0	0	0	0	0	0	0	14976	841	29	4		4	SNRPB2	20	16720905	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	11192543	16720905	46304615	486	146444											
POFUT1	23509	broad.mit.edu	37	chr20	30804435	30804435	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaacccctttggcccattCtgggatcagtttcatgtgag	11	10	3	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30804435	T	T	30804435	2	4	182	1	0	0	0	0	0	0	0	1	12278	912	32	4		4	POFUT1	20	30804435	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	14083530	30804435	32221085	487	146445											
CEP250	11190	broad.mit.edu	37	chr20	34061189	34061189	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catctggtttctcttgctctCtctccacaggacctaaggca	7	14	4	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34061189	A	A	34061189	1	1	182	0	1	0	0	0	0	0	0	0	3282	928	32	3		3	CEP250	20	34061189	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3256754	34061189	28964331	488	146446											
DHX35	60625	broad.mit.edu	37	chr20	37638884	37638884	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tagtgattgcatttgattgtGacatttggtcccaaacagtt	9	6	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37638884	C	C	37638884	1	2	182	0	1	0	0	0	0	0	0	0	4548	1305	45	4		4	DHX35	20	37638884	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	3577695	37638884	25386636	489	146447											
KCNB1	3745	broad.mit.edu	37	chr20	47990222	47990222	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacccagagctccccgccaGcccacttctggggctgtgct	11	18	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47990222	T	T	47990222	2	4	182	1	0	0	0	0	0	0	0	1	8082	958	34	3		3	KCNB1	20	47990222	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	10351338	47990222	15035298	490	146448											
NFATC2	4773	broad.mit.edu	37	chr20	50139665	50139665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcttgggccaagtgggcGgaaccagcaggatggattct	17	9	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50139665	T	T	50139665	3	4	182	1	0	0	0	0	1	0	0	0	10457	1116	39	1	1746	1	NFATC2	20	50139665	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	2149443	50139665	12885855	491	146449											
ZFP64	55734	broad.mit.edu	37	chr20	50701362	50701362	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgagcccttccttgcccaGaggggcccggttctccgtct	11	16	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50701362	A	A	50701362	2	1	182	1	0	0	0	0	0	0	0	1	17778	933	33	4		4	ZFP64	20	50701362	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	561697	50701362	12324158	492	146450											
PRPF6	24148	broad.mit.edu	37	chr20	62658492	62658492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatgatggagaaggcgcGggaagcctataaccaggggg	19	6	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62658492	T	T	62658492	3	4	182	1	0	0	0	0	1	0	0	0	12680	1116	39	1	2248	1	PRPF6	20	62658492	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	11957130	62658492	367028	493	146451											
KRTAP20-2	337976	broad.mit.edu	37	chr21	32007755	32007755	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgcccatcttgctatggaaGatactggtcctgtggcttct	10	12	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32007755	C	C	32007755	3	2	182	1	0	0	0	0	1	0	0	0	8608	942	33	4	175	4	KRTAP20-2	21	32007755	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08		32007755	16122140	494	146452											
DOPEY2	9980	broad.mit.edu	37	chr21	37617525	37617525	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagtacccgctgcgaggcGagctgagcgaggaagagctg	17	9	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37617525	A	A	37617525	3	1	182	1	0	0	0	0	1	0	0	0	4748	1059	37	4	3317	4	DOPEY2	21	37617525	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	5609770	37617525	10512370	495	146453											
WRB	7485	broad.mit.edu	37	chr21	40768888	40768888	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaggatggatacagccgcGaggctaaaaaacggatttcc	13	8	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40768888	A	A	40768888	1	1	182	0	1	0	0	0	0	0	0	0	17528	1073	37	4		4	WRB	21	40768888	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	3151363	40768888	7361007	496	146454											
KRTAP10-10	353333	broad.mit.edu	37	chr21	46057941	46057941	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgcaagtccacctgcTgcgtgcccgtcccctcctgc	10	18	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46057941	A	A	46057941	3	1	182	1	0	0	0	0	1	0	0	0	8577	1580	55	5	609	5	KRTAP10-10	21	46057941	Missense_Mutation	SNP	T	TCGA-55-6712-01A-11D-1855-08	5289053	46057941	2071954	497	146455											
C21orf57	54059	broad.mit.edu	37	chr21	47706941	47706941	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgcagaaatttgacctgggGatcatctgtgttgacaacaa	11	7	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47706941	C	C	47706941	2	2	182	1	0	0	0	0	0	0	0	1	2150	1161	41	4		4	C21orf57	21	47706941	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	1649000	47706941	422954	498	146456											
GAB4	128954	broad.mit.edu	37	chr22	17449263	17449263	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccatgctgggtgtacttGccggaggaagctacgacaga	13	11	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17449263	T	T	17449263	2	4	182	1	0	0	0	0	0	0	0	1	6211	1306	46	3		3	GAB4	22	17449263	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08		17449263	33855303	499	146457											
CECR2	27443	broad.mit.edu	37	chr22	18018128	18018128	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatcttagttcagtcagGtgtgtctgcgatagacctga	10	9	4	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18018128	A	A	18018128	1	1	182	0	1	0	0	0	0	0	0	0	3236	1276	44	4		4	CECR2	22	18018128	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	568865	18018128	33286438	500	146458											
TXNRD2	10587	broad.mit.edu	37	chr22	19865699	19865699	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accagctgtgggggctccctCaggcacaccatctgaaagcc	11	15	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19865699	G	G	19865699	2	3	182	1	0	0	0	0	0	0	0	1	16934	813	29	4		4	TXNRD2	22	19865699	Silent	SNP	C	TCGA-55-6712-01A-11D-1855-08	1847571	19865699	31438867	501	146459											
PITPNB	23760	broad.mit.edu	37	chr22	28290701	28290701	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttacacatataatctttatCttgagtctctcaggggacat	6	9	4	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28290701	G	G	28290701	1	3	182	0	1	0	0	0	0	0	0	0	12043	928	32	4		4	PITPNB	22	28290701	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	8425002	28290701	23013865	502	146460											
SAMM50	25813	broad.mit.edu	37	chr22	44368741	44368741	+	Intron	DEL	C	-	-													cactgctattttttttttttCccctcctaggtacttggcct					rs71188424		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44368741	-	-	44368741	6	5	182	0	1	1	0	1	0	0	0	0	13940	870	30	0		0	SAMM50	22	44368741	Intron	DEL	C	TCGA-55-6712-01A-11D-1855-08	16078040	44368741	6935825	503	146461											
UPK3A	7380	broad.mit.edu	37	chr22	45689226	45689226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgggagggctggaccCcagggacatgccagacacat	14	13	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45689226	A	A	45689226	1	1	182	0	1	0	0	0	0	0	0	0	17136	638	22	2		2	UPK3A	22	45689226	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	1320485	45689226	5615340	504	146462											
CERK	64781	broad.mit.edu	37	chr22	47095273	47095273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtccttgatgatgtcccCgtagaagccgtagcccagca	10	13	0	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47095273	A	A	47095273	3	1	182	1	0	0	0	0	1	0	0	0	3297	652	23	1	757	1	CERK	22	47095273	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	1406047	47095273	4209293	505	146463											
SAPS2	9701	broad.mit.edu	37	chr22	50845326	50845326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatcacgtgcaaagcctcCgtgacttggggcaccgtcat	10	12	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50845326	A	A	50845326	1	1	182	0	1	0	0	0	0	0	0	0	13949	667	23	1		1	SAPS2	22	50845326	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	3750053	50845326	459240	506	146464											
SBF1	6305	broad.mit.edu	37	chr22	50898678	50898678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatccagagaccacccaGgactccacccccacccctcc	5	23	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50898678	T	T	50898678	1	4	182	0	1	0	0	0	0	0	0	0	13970	1015	35	2		2	SBF1	22	50898678	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	53352	50898678	405888	507	146465											
CSF2RA	1438	broad.mit.edu	37	chrX	1428412	1428412	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcatggacatctccgcctCcgcgacacgggggaactgtt	13	13	1	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1428412	T	T	1428412	1	4	182	0	1	0	0	0	0	0	0	0	3968	855	30	4		4	CSF2RA	23	1428412	3'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08		1428412	153842148	508	146466											
CDKL5	6792	broad.mit.edu	37	chrX	18631440	18631440	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttcctttttttaattgtaGatttaagagttgaaataaat	5	3	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18631440	A	A	18631440	1	1	182	0	1	0	0	0	0	0	0	0	3187	957	33	4		4	CDKL5	23	18631440	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	17203028	18631440	136639120	509	146467											
SH3KBP1	30011	broad.mit.edu	37	chrX	19560190	19560190	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acggggagttggctctgtgtCcagctgttcccaaagaggat	14	9	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19560190	G	G	19560190	3	3	182	1	0	0	0	0	1	0	0	0	14368	855	30	4	264	4	SH3KBP1	23	19560190	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	928750	19560190	135710370	510	146468											
FAM104B	90736	broad.mit.edu	37	chrX	55170248	55170248	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttccctgctgtgaagtattGagttttatttcaggaccaaa	8	8	1	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55170248	C	C	55170248	2	2	182	1	0	0	0	0	0	0	0	1	5432	1277	45	4		4	FAM104B	23	55170248	Silent	SNP	G	TCGA-55-6712-01A-11D-1855-08	35610058	55170248	100100312	511	146469											
MAGEE1	57692	broad.mit.edu	37	chrX	75648398	75648398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcgcacaacagcagctgGggcgaaatgcaggcccctaa	12	13	0	0			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75648398	T	T	75648398	3	4	182	1	0	0	0	0	1	0	0	0	9277	1241	43	2	77	2	MAGEE1	23	75648398	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08	20478150	75648398	79622162	512	146470											
PGK1	5230	broad.mit.edu	37	chrX	77380591	77380591	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatacccatataagctggcaGaattctgatcagaggaaggt	10	7	2	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77380591	A	A	77380591	1	1	182	0	1	0	0	0	0	0	0	0	11885	957	33	4		4	PGK1	23	77380591	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	1732193	77380591	77889969	513	146471											
KLHL4	56062	broad.mit.edu	37	chrX	86921487	86921487	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttaggaagttcctgttAacattggaagagctggtgca	12	5	0	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86921487	G	G	86921487	3	3	182	1	0	0	0	0	1	0	0	0	8462	362	13	5	2152	5	KLHL4	23	86921487	Missense_Mutation	SNP	A	TCGA-55-6712-01A-11D-1855-08	9540896	86921487	68349073	514	146472											
TAF7L	54457	broad.mit.edu	37	chrX	100531188	100531188	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtaaaactctactacacatCgaagcgataacttcttgagc	6	10	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100531188	T	T	100531188	1	4	182	0	1	0	0	0	0	0	0	0	15652	899	31	4		4	TAF7L	23	100531188	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	13609701	100531188	54739372	515	146473											
BTK	695	broad.mit.edu	37	chrX	100608442	100608442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattagaatcagttggttccCcgctctgtgctttttatatt	8	8	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100608442	A	A	100608442	1	1	182	0	1	0	0	0	0	0	0	0	1567	638	22	2		2	BTK	23	100608442	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	77254	100608442	54662118	516	146474											
KLHL13	90293	broad.mit.edu	37	chrX	117079539	117079539	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcctcttccacgagagatCtgaaagtttttttacataag	6	9	2	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117079539	G	G	117079539	5	3	182	1	0	0	0	0	0	0	1	0	8440	927	32	4	1893	4	KLHL13	23	117079539	Splice_Site	SNP	C	TCGA-55-6712-01A-11D-1855-08	16471097	117079539	38191021	517	146475											
IGSF1	3547	broad.mit.edu	37	chrX	130420592	130420592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcacgaatgcaaaagagCaaaacagtgaatgtcttcag	8	8	3	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130420592	A	A	130420592	3	1	182	1	0	0	0	0	1	0	0	0	7666	709	25	3	4106	3	IGSF1	23	130420592	Missense_Mutation	SNP	C	TCGA-55-6712-01A-11D-1855-08	13341053	130420592	24849968	518	146476											
GPC3	2719	broad.mit.edu	37	chrX	132670081	132670081	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaatagaaaaaaataaGaaagtggttccctttatcga	6	4	0	2			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132670081	A	A	132670081	1	1	182	0	1	0	0	0	0	0	0	0	6664	957	33	4		4	GPC3	23	132670081	3'UTR	SNP	G	TCGA-55-6712-01A-11D-1855-08	2249489	132670081	22600479	519	146477											
RENBP	5973	broad.mit.edu	37	chrX	153206851	153206851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatccagccccaggttacCctctagagaagcaaccacct	6	17	1	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153206851	T	T	153206851	1	4	182	0	1	0	0	0	0	0	0	0	13333	638	22	4		4	RENBP	23	153206851	Intron	SNP	C	TCGA-55-6712-01A-11D-1855-08	20536770	153206851	2063709	520	146478											
CLIC2	1193	broad.mit.edu	37	chrX	154507140	154507140	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaaacctttctaatatgtCaataagtaaaatctgatcac	3	8	4	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154507140	G	G	154507140	1	3	182	0	1	0	0	0	0	0	0	0	3558	841	29	4		4	CLIC2	23	154507140	3'UTR	SNP	C	TCGA-55-6712-01A-11D-1855-08	1300289	154507140	763420	521	146479											
PCDH11Y	83259	broad.mit.edu	37	chrY	4968620	4968620	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatccaagaactgcctctcGataacacctttgtggcctgt	7	13	2	1			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4968620	A	A	4968620	3	1	182	1	0	0	0	0	1	0	0	0	11603	1058	37	4	3043	4	PCDH11Y	24	4968620	Missense_Mutation	SNP	G	TCGA-55-6712-01A-11D-1855-08		4968620	54404946	522	146480											
PCDH11Y	83259	broad.mit.edu	37	chrY	5441980	5441980	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagaaccgagaggagctaGacaaatactggcctcagcag	13	9	1	3			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5441980	C	C	5441980	1	2	182	0	1	0	0	0	0	0	0	0	11603	957	33	4		4	PCDH11Y	24	5441980	Intron	SNP	G	TCGA-55-6712-01A-11D-1855-08	473360	5441980	53931586	523	146481											
SSU72	29101	broad.mit.edu	37	chr1	1500240	1500240	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggcttgtcgggagctggtCctggaagcttcacgtgagtc	16	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1500240	T	T	1500240	3	4	183	1	0	0	0	0	1	0	0	0	15320	855	30	4	463	4	SSU72	1	1500240	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08		1500240	247750381	1	146482											
DNAJC11	55735	broad.mit.edu	37	chr1	6706000	6706000	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggccgggtcggattccaCgggatgaaaactgcagagca	14	10	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6706000	T	T	6706000	3	4	183	1	0	0	0	0	1	0	0	0	4670	536	19	4	972	4	DNAJC11	1	6706000	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5205760	6706000	242544621	2	146483											
CAMTA1	23261	broad.mit.edu	37	chr1	7805036	7805036	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacaatgagctggctggccAgttatctagcggatgctgac	13	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7805036	G	G	7805036	3	3	183	1	0	0	0	0	1	0	0	0	2639	188	7	5	4390	5	CAMTA1	1	7805036	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	1099036	7805036	241445585	3	146484											
TNFRSF8	943	broad.mit.edu	37	chr1	12186307	12186307	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtgggtgagtgtccagcCgtccaaaggggctgcccgag	16	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12186307	T	T	12186307	1	4	183	0	1	0	0	0	0	0	0	0	16422	667	23	4		4	TNFRSF8	1	12186307	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4381271	12186307	237064314	4	146485											
VPS13D	55187	broad.mit.edu	37	chr1	12382037	12382037	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaggtaatgatgcaaaatCtgtgcaatacgttgatatgc	11	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12382037	T	T	12382037	1	4	183	0	1	0	0	0	0	0	0	0	17319	928	32	4		4	VPS13D	1	12382037	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	195730	12382037	236868584	5	146486											
C1orf158	93190	broad.mit.edu	37	chr1	12815806	12815806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactcaggcctggaccccaCccaaagctcaggggacacca	9	17	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12815806	A	A	12815806	1	1	183	0	1	0	0	0	0	0	0	0	2027	522	18	3		3	C1orf158	1	12815806	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	433769	12815806	236434815	6	146487											
CELA2B	51032	broad.mit.edu	37	chr1	15809791	15809791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcaaactggctaaccCcgtctccctcaccgacaaga	6	18	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15809791	A	A	15809791	3	1	183	1	0	0	0	0	1	0	0	0	3242	623	22	2	407	2	CELA2B	1	15809791	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2993985	15809791	233440830	7	146488											
DDI2	84301	broad.mit.edu	37	chr1	15983175	15983175	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtgggccccagaccagGtatttatagacaccatgtta	11	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15983175	T	T	15983175	5	4	183	1	0	0	0	0	0	0	1	0	4362	1275	44	3		3	DDI2	1	15983175	Splice_Site	SNP	G	TCGA-64-1676-01A-01W-0928-08	173384	15983175	233267446	8	146489											
PQLC2	54896	broad.mit.edu	37	chr1	19644421	19644421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagcgaggggttgtctGgtgggccacgggcctctcca	16	12	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19644421	T	T	19644421	1	4	183	0	1	0	0	0	0	0	0	0	12520	1363	47	2		2	PQLC2	1	19644421	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3661246	19644421	229606200	9	146490											
PLA2G2A	5320	broad.mit.edu	37	chr1	20305148	20305148	+	Intron	DEL	G	-	-													tgagagaggatcactgcaatGggagagaaaactaagggaca							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20305148	-	-	20305148	6	5	183	0	1	1	0	1	0	0	0	0	12090	1363	47	0		0	PLA2G2A	1	20305148	Intron	DEL	G	TCGA-64-1676-01A-01W-0928-08	660727	20305148	228945473	10	146491											
EPHB2	2048	broad.mit.edu	37	chr1	23234356	23234356	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagagccaggctggcaggGccctgctctggtttcccatt	12	15	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23234356	A	A	23234356	1	1	183	0	1	0	0	0	0	0	0	0	5217	1218	42	4		4	EPHB2	1	23234356	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2929208	23234356	226016265	11	146492											
MYOM3	127294	broad.mit.edu	37	chr1	24385442	24385442	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgatagtggccacatccGgcagacctctcaccactttg	8	15	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24385442	A	A	24385442	3	1	183	1	0	0	0	0	1	0	0	0	10187	1116	39	4	299	4	MYOM3	1	24385442	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1151086	24385442	224865179	12	146493											
SEPN1	57190	broad.mit.edu	37	chr1	26135659	26135659	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgagtgggccacactgGctggcctggagcaccgggga	18	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26135659	C	C	26135659	1	2	183	0	1	0	0	0	0	0	0	0	14169	1218	42	4		4	SEPN1	1	26135659	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1750217	26135659	223114962	13	146494											
RPS6KA1	6195	broad.mit.edu	37	chr1	26885235	26885235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgctccccctttgctGggctgcctcagggtcgaggg	14	15	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26885235	T	T	26885235	1	4	183	0	1	0	0	0	0	0	0	0	13761	1363	47	2		2	RPS6KA1	1	26885235	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	749576	26885235	222365386	14	146495											
AHDC1	27245	broad.mit.edu	37	chr1	27876408	27876408	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttccgggaccgtctcttgCgctttggcttcccagtcaca	9	15	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27876408	G	G	27876408	3	3	183	1	0	0	0	0	1	0	0	0	412	768	27	4	2596	4	AHDC1	1	27876408	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	991173	27876408	221374213	15	146496											
ADC	113451	broad.mit.edu	37	chr1	33562427	33562427	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcactgtggcagtcagcatCattgccaagaaggaggttct	11	9	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33562427	T	T	33562427	2	4	183	1	0	0	0	0	0	0	0	1	287	816	29	4		4	ADC	1	33562427	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	5686019	33562427	215688194	16	146497											
CSMD2	114784	broad.mit.edu	37	chr1	34291146	34291146	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggctgctctctggccgttGggtcagtgtgtccaagcgca	15	11	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34291146	A	A	34291146	1	1	183	0	1	0	0	0	0	0	0	0	3979	1363	47	4		4	CSMD2	1	34291146	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	728719	34291146	214959475	17	146498											
EIF2C1	26523	broad.mit.edu	37	chr1	36381063	36381063	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcgtgagctcctcatcCaattctacaagtccacccgt	8	14	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36381063	T	T	36381063	4	4	183	1	0	0	0	0	0	1	0	0	5045	595	21	4	2006	4	EIF2C1	1	36381063	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2089917	36381063	212869558	18	146499											
COL8A2	1296	broad.mit.edu	37	chr1	36563472	36563472	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagtggctgggttgtagcCgctgtggccattgtagagag	17	8	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36563472	A	A	36563472	3	1	183	1	0	0	0	0	1	0	0	0	3738	652	23	1	305	1	COL8A2	1	36563472	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	182409	36563472	212687149	19	146500											
RLF	6018	broad.mit.edu	37	chr1	40705942	40705942	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacaacaacagttccttcCttggaaaacctgagggttgt	9	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40705942	T	T	40705942	2	4	183	1	0	0	0	0	0	0	0	1	13500	668	24	4		4	RLF	1	40705942	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	4142470	40705942	208544679	20	146501											
TIE1	7075	broad.mit.edu	37	chr1	43779579	43779579	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgcccttttaaccctGgtgtgcatccgcagaagctg	11	13	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43779579	T	T	43779579	2	4	183	1	0	0	0	0	0	0	0	1	16016	1335	47	2		2	TIE1	1	43779579	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3073637	43779579	205471042	21	146502											
MPL	4352	broad.mit.edu	37	chr1	43817854	43817855	+	Intron	DNP	TG	AT	AT													tccctgccaatccactgccaTggctcagtctgcttctcttc							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43817855	AT	AT	43817854	1	1	183	0	1	0	0	0	0	0	0	0	9824	1479	51	5		5	MPL	1	43817854	Intron	DNP	TG	TCGA-64-1676-01A-01W-0928-08	38275	43817854	205432767	22	146503											
ATP6V0B	533	broad.mit.edu	37	chr1	44441771	44441771	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccacaacaggttcctgacGgagacttcgcccttcatgtg	9	13	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44441771	A	A	44441771	2	1	183	1	0	0	0	0	0	0	0	1	1175	1103	39	4		4	ATP6V0B	1	44441771	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	623917	44441771	204808850	23	146504											
PIK3R3	8503	broad.mit.edu	37	chr1	46521524	46521524	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaggtttgatgctattcAtttttttatctatttctcgg	8	6	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46521524	G	G	46521524	3	3	183	1	0	0	0	0	1	0	0	0	12015	217	8	5	517	5	PIK3R3	1	46521524	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	2079753	46521524	202729097	24	146505											
CYP4A11	1579	broad.mit.edu	37	chr1	47395930	47395930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaagcggagcagggtcaGggccgtggccaccttcagct	14	13	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47395930	T	T	47395930	3	4	183	1	0	0	0	0	1	0	0	0	4216	991	35	2	146	2	CYP4A11	1	47395930	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	874406	47395930	201854691	25	146506											
DAB1	1600	broad.mit.edu	37	chr1	57611039	57611039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaatcccgatcaatttgGctttgtaccggaccccttca	6	14	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57611039	T	T	57611039	3	4	183	1	0	0	0	0	1	0	0	0	4250	1203	42	3	1584	3	DAB1	1	57611039	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	10215109	57611039	191639582	26	146507											
DAB1	1600	broad.mit.edu	37	chr1	57611099	57611099	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtggcttcactgcgatccTgacctaaaaagagaaaaagc	9	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57611099	A	A	57611099	3	1	183	1	0	0	0	0	1	0	0	0	4250	1580	55	5	1644	5	DAB1	1	57611099	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	60	57611099	191639522	27	146508											
DOCK7	85440	broad.mit.edu	37	chr1	63084481	63084481	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttcacttgaagcagctcCggagttaggcaataatgggg	13	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63084481	G	G	63084481	2	3	183	1	0	0	0	0	0	0	0	1	4732	639	23	4		4	DOCK7	1	63084481	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	5473382	63084481	186166140	28	146509											
LEPR	3953	broad.mit.edu	37	chr1	66083707	66083707	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtgtgattgtttcctGgatactatcacccagtgatt	9	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66083707	A	A	66083707	4	1	183	1	0	0	0	0	0	1	0	0	8800	1357	47	4	2327	4	LEPR	1	66083707	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2999226	66083707	183166914	29	146510											
PDE4B	5142	broad.mit.edu	37	chr1	66827248	66827248	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgttttgaatattgcagtgGattctcatagacacatgtgc	9	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66827248	C	C	66827248	1	2	183	0	1	0	0	0	0	0	0	0	11734	1189	41	4		4	PDE4B	1	66827248	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	743541	66827248	182423373	30	146511											
SGIP1	84251	broad.mit.edu	37	chr1	67101547	67101547	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatggtatgtttgctgactcCatgtaattctttatatgtgt	8	5	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67101547	G	G	67101547	1	3	183	0	1	0	0	0	0	0	0	0	14319	609	21	4		4	SGIP1	1	67101547	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	274299	67101547	182149074	31	146512											
SGIP1	84251	broad.mit.edu	37	chr1	67108500	67108500	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgttttatagaactcacCtgagctggatgaagaaggct	11	6	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67108500	A	A	67108500	3	1	183	1	0	0	0	0	1	0	0	0	14319	681	24	2	258	2	SGIP1	1	67108500	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	6953	67108500	182142121	32	146513											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67243129	67243129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgtctatgcagtttacCttgagtgattgaaaataaga	8	5	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67243129	A	A	67243129	3	1	183	1	0	0	0	0	1	0	0	0	15841	681	24	2	546	2	TCTEX1D1	1	67243129	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	134629	67243129	182007492	33	146514											
LRRC40	55631	broad.mit.edu	37	chr1	70611392	70611392	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcaattacaataatcacCttttaagatgatactaaaac	3	7	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70611392	A	A	70611392	1	1	183	0	1	0	0	0	0	0	0	0	9085	696	24	2		2	LRRC40	1	70611392	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	3368263	70611392	178639229	34	146515											
PTGER3	5733	broad.mit.edu	37	chr1	71331318	71331318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtttcattagagatagGctgacttcctgggtaaaaag	11	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71331318	T	T	71331318	1	4	183	0	1	0	0	0	0	0	0	0	12850	1218	42	3		3	PTGER3	1	71331318	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	719926	71331318	177919303	35	146516											
TNNI3K	51086	broad.mit.edu	37	chr1	74902192	74902192	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtctctggatgaagacaaCatgacaaaacaacctggggt	10	9	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74902192	T	T	74902192	2	4	183	1	0	0	0	0	0	0	0	1	16452	477	17	4		4	TNNI3K	1	74902192	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	3570874	74902192	174348429	36	146517											
SLC44A5	204962	broad.mit.edu	37	chr1	75672394	75672394	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagatccatcatttctttcCagatcttcacctgtatatgc	5	11	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75672394	A	A	75672394	2	1	183	1	0	0	0	0	0	0	0	1	14753	581	21	2		2	SLC44A5	1	75672394	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	770202	75672394	173578227	37	146518											
SLC44A5	204962	broad.mit.edu	37	chr1	75707607	75707607	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcttggcctcagtctcatCaattgtgaaatacgggaact	8	9	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75707607	A	A	75707607	1	1	183	0	1	0	0	0	0	0	0	0	14753	841	29	3		3	SLC44A5	1	75707607	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	35213	75707607	173543014	38	146519											
SLC44A5	204962	broad.mit.edu	37	chr1	76107211	76107211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcttctgcactgactgGcttttctacaaatggctttt	8	9	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76107211	A	A	76107211	1	1	183	0	1	0	0	0	0	0	0	0	14753	1218	42	4		4	SLC44A5	1	76107211	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	399604	76107211	173143410	39	146520											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76775597	76775597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagggagcaggcttttaCaactgctatttcatcctgtt	9	10	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76775597	A	A	76775597	1	1	183	0	1	0	0	0	0	0	0	0	15343	493	17	3		3	ST6GALNAC3	1	76775597	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	668386	76775597	172475024	40	146521											
AK5	26289	broad.mit.edu	37	chr1	77784057	77784057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatgagaactttgcccCcatgatctaatcacctctca	4	14	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77784057	A	A	77784057	1	1	183	0	1	0	0	0	0	0	0	0	443	638	22	2		2	AK5	1	77784057	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1008460	77784057	171466564	41	146522											
GIPC2	54810	broad.mit.edu	37	chr1	78512063	78512063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgcctctccgccgcgccGcgccgcgccgcgcgtatttc	11	22	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78512063	T	T	78512063	1	4	183	0	1	0	0	0	0	0	0	0	6457	1102	38	3		3	GIPC2	1	78512063	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	728006	78512063	170738558	42	146523											
PTGFR	5737	broad.mit.edu	37	chr1	78958693	78958693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaatggagccatagcaGtatttgtatatgcttctgat	8	7	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78958693	T	T	78958693	3	4	183	1	0	0	0	0	1	0	0	0	12855	1029	36	3	267	3	PTGFR	1	78958693	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	446630	78958693	170291928	43	146524											
LPHN2	23266	broad.mit.edu	37	chr1	82447508	82447508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtcttgggtgcttggcGctttcgctcttctgtgtctt	12	11	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82447508	T	T	82447508	3	4	183	1	0	0	0	0	1	0	0	0	9003	1087	38	3	3141	3	LPHN2	1	82447508	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3488815	82447508	166803113	44	146525											
C1orf52	148423	broad.mit.edu	37	chr1	85725280	85725280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgctcccgtatgccgCaaaatagctcagagggtcct	11	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85725280	A	A	85725280	3	1	183	1	0	0	0	0	1	0	0	0	2066	710	25	3	523	3	C1orf52	1	85725280	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3277772	85725280	163525341	45	146526											
COL24A1	255631	broad.mit.edu	37	chr1	86482819	86482819	+	Intron	DEL	C	-	-													gtttcaaatttattaactttCcaccaatattttacctctgg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86482819	-	-	86482819	6	5	183	0	1	1	0	1	0	0	0	0	3715	870	30	0		0	COL24A1	1	86482819	Intron	DEL	C	TCGA-64-1676-01A-01W-0928-08	757539	86482819	162767802	46	146527											
PKN2	5586	broad.mit.edu	37	chr1	89289990	89289990	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatctttttatcctgaaCagagatttgaaattggataa	7	5	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89289990	T	T	89289990	1	4	183	0	1	0	0	0	0	0	0	0	12075	493	17	4		4	PKN2	1	89289990	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2807171	89289990	159960631	47	146528											
GBP1	2633	broad.mit.edu	37	chr1	89523826	89523826	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcttcctgcggtgaacGggccgatcaaagacaaagca	12	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89523826	A	A	89523826	2	1	183	1	0	0	0	0	0	0	0	1	6335	1103	39	4		4	GBP1	1	89523826	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	233836	89523826	159726795	48	146529											
LRRC8D	55144	broad.mit.edu	37	chr1	90399760	90399760	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattatttgtgtttatggctTtatctgcctctacactctct	5	10	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90399760	G	G	90399760	3	3	183	1	0	0	0	0	1	0	0	0	9111	1841	64	5	1135	5	LRRC8D	1	90399760	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	875934	90399760	158850861	49	146530											
ABCA4	24	broad.mit.edu	37	chr1	94496568	94496568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctgaagaaggtgtactGctgcccatatatccaggggt	12	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94496568	T	T	94496568	3	4	183	1	0	0	0	0	1	0	0	0	34	1328	46	3	2676	3	ABCA4	1	94496568	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4096808	94496568	154754053	50	146531											
LPPR4	9890	broad.mit.edu	37	chr1	99772348	99772348	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagagaagcaacattgatAgcaatgagcatcaccaccac	8	11	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99772348	T	T	99772348	3	4	183	1	0	0	0	0	1	0	0	0	9014	420	15	5	2100	5	LPPR4	1	99772348	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	5275780	99772348	149478273	51	146532											
S1PR1	1901	broad.mit.edu	37	chr1	101704717	101704717	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctcatctgctgctttatCatcctggagaacatctttgt	6	10	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101704717	A	A	101704717	2	1	183	1	0	0	0	0	0	0	0	1	13904	816	29	3		3	S1PR1	1	101704717	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1932369	101704717	147545904	52	146533											
OLFM3	118427	broad.mit.edu	37	chr1	102359240	102359240	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcttgacaactgaaccatAgtcatcatctctcatccagg	5	13	5	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102359240	G	G	102359240	1	3	183	0	1	0	0	0	0	0	0	0	10949	435	15	5		5	OLFM3	1	102359240	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	654523	102359240	146891381	53	146534											
COL11A1	1301	broad.mit.edu	37	chr1	103467972	103467972	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttcaaaggagctgcagtgGcttagacttacctgaggtcc	11	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103467972	C	C	103467972	1	2	183	0	1	0	0	0	0	0	0	0	3699	1218	42	4		4	COL11A1	1	103467972	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1108732	103467972	145782649	54	146535											
AMY1A	276	broad.mit.edu	37	chr1	104297213	104297213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgaggacatggcgctggagGagcctctatacttaccttct	11	11	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104297213	T	T	104297213	3	4	183	1	0	0	0	0	1	0	0	0	591	1174	41	3	4145	3	AMY1A	1	104297213	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	829241	104297213	144953408	55	146536											
FAM102B	284611	broad.mit.edu	37	chr1	109159083	109159083	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaataaatggattatgtatCtaaaagtataagaaagattt	6	3	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109159083	A	A	109159083	1	1	183	0	1	0	0	0	0	0	0	0	5429	928	32	3		3	FAM102B	1	109159083	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4861870	109159083	140091538	56	146537											
FAM40A	85369	broad.mit.edu	37	chr1	110584388	110584388	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaacaatgagccatttgccAtcatgctgtttgggatggtg	11	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110584388	T	T	110584388	3	4	183	1	0	0	0	0	1	0	0	0	5611	217	8	5	820	5	FAM40A	1	110584388	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	1425305	110584388	138666233	57	146538											
KCNC4	3749	broad.mit.edu	37	chr1	110754218	110754218	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaggagatggccaagggcGaggcgtcggagaagatcatc	18	7	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110754218	T	T	110754218	4	4	183	1	0	0	0	0	0	1	0	0	8087	1059	37	3	99	3	KCNC4	1	110754218	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	169830	110754218	138496403	58	146539											
CHI3L2	1117	broad.mit.edu	37	chr1	111778693	111778693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgacttccatgggtcttGggaaaagccccttatcactg	9	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111778693	T	T	111778693	3	4	183	1	0	0	0	0	1	0	0	0	3372	1357	47	2	679	2	CHI3L2	1	111778693	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1024475	111778693	137471928	59	146540											
SLC16A1	6566	broad.mit.edu	37	chr1	113456702	113456702	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taattgatgcccatgccaatGaagagatagatacctgaaat	8	7	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113456702	A	A	113456702	2	1	183	1	0	0	0	0	0	0	0	1	14515	1281	45	4		4	SLC16A1	1	113456702	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1678009	113456702	135793919	60	146541											
HSD3B2	3284	broad.mit.edu	37	chr1	119964605	119964605	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acccgtacagcaaaaagcttGctgagaaggctgtgctggcg	13	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119964605	C	C	119964605	3	2	183	1	0	0	0	0	1	0	0	0	7458	1319	46	4	491	4	HSD3B2	1	119964605	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6507903	119964605	129286016	61	146542											
HSD3B2	3284	broad.mit.edu	37	chr1	119987821	119987821	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacttgggagtggggagtGgggcacatggatctgttcat	17	6	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119987821	T	T	119987821	1	4	183	0	1	0	0	0	0	0	0	0	7458	1363	47	2		2	HSD3B2	1	119987821	3'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	23216	119987821	129262800	62	146543											
NBPF9	400818	broad.mit.edu	37	chr1	144168520	144168520	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacagtaccttggcttggctCttgacgtggatggtgagtac	13	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144168520	G	G	144168520	1	3	183	0	1	0	0	0	0	0	0	0	10294	928	32	4		4	NBPF9	1	144168520	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	24180699	144168520	105082101	63	146544											
C1orf56	54964	broad.mit.edu	37	chr1	151020974	151020974	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccactgcaagtcgggcacCatgagccggagccggtctgg	15	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151020974	A	A	151020974	2	1	183	1	0	0	0	0	0	0	0	1	2070	581	21	2		2	C1orf56	1	151020974	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	6852454	151020974	98229647	64	146545											
FLG	2312	broad.mit.edu	37	chr1	152277375	152277375	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggacccccagtgtctactGtctctgactgcagatgaagc	10	13	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152277375	C	C	152277375	3	2	183	1	0	0	0	0	1	0	0	0	5979	1368	48	4	2202	4	FLG	1	152277375	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1256401	152277375	96973246	65	146546											
FLG	2312	broad.mit.edu	37	chr1	152282083	152282083	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaggaaagaccctgaacgtCcagacctttcccctgactgg	10	13	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152282083	G	G	152282083	3	3	183	1	0	0	0	0	1	0	0	0	5979	855	30	4	6910	4	FLG	1	152282083	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4708	152282083	96968538	66	146547											
KPRP	448834	broad.mit.edu	37	chr1	152733826	152733826	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggtgactgagataacCctctctcctgctctgaaaat	9	10	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152733826	A	A	152733826	1	1	183	0	1	0	0	0	0	0	0	0	8507	638	22	2		2	KPRP	1	152733826	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	451743	152733826	96516795	67	146548											
LCE1E	353135	broad.mit.edu	37	chr1	152759841	152759841	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcactcccaagtgccctccCaagtgtcccacccccaaatg	6	19	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152759841	T	T	152759841	2	4	183	1	0	0	0	0	0	0	0	1	8735	581	21	4		4	LCE1E	1	152759841	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	26015	152759841	96490780	68	146549											
PGLYRP3	114771	broad.mit.edu	37	chr1	153283302	153283302	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcctgagggccagcacCtggctcaggcttctcggggc	15	14	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153283302	A	A	153283302	1	1	183	0	1	0	0	0	0	0	0	0	11890	696	24	2		2	PGLYRP3	1	153283302	5'Flank	SNP	C	TCGA-64-1676-01A-01W-0928-08	523461	153283302	95967319	69	146550											
CRTC2	200186	broad.mit.edu	37	chr1	153925960	153925960	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggggtgagggagcagGgccccagaaactacagataa	18	7	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153925960	C	C	153925960	1	2	183	0	1	0	0	0	0	0	0	0	3932	1247	43	4		4	CRTC2	1	153925960	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	642658	153925960	95324661	70	146551											
NUP210L	91181	broad.mit.edu	37	chr1	153995618	153995618	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcagagccagataaagCtgggtattgtgtgtgtggaa	14	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153995618	T	T	153995618	2	4	183	1	0	0	0	0	0	0	0	1	10856	796	28	4		4	NUP210L	1	153995618	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	69658	153995618	95255003	71	146552											
BCAN	63827	broad.mit.edu	37	chr1	156618448	156618448	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggggtgcagagattgccacCacgggccaactgtatgcagc	14	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156618448	G	G	156618448	2	3	183	1	0	0	0	0	0	0	0	1	1350	581	21	4		4	BCAN	1	156618448	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	2622830	156618448	92632173	72	146553											
SH2D2A	9047	broad.mit.edu	37	chr1	156784833	156784833	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccatgactcacctccGggtgatgaagccatggaacc	9	15	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156784833	T	T	156784833	2	4	183	1	0	0	0	0	0	0	0	1	14345	1115	39	1		1	SH2D2A	1	156784833	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	166385	156784833	92465788	73	146554											
ETV3L	440695	broad.mit.edu	37	chr1	157062424	157062424	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaggactcctccccaacttCccaccttcctctctagttaa	5	17	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157062424	A	A	157062424	1	1	183	0	1	0	0	0	0	0	0	0	5322	870	30	3		3	ETV3L	1	157062424	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	277591	157062424	92188197	74	146555											
FCRL5	83416	broad.mit.edu	37	chr1	157497735	157497735	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatttttaaaattagaaacAgctctttgtcctagccagaa	6	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157497735	C	C	157497735	1	2	183	0	1	0	0	0	0	0	0	0	5855	203	7	5		5	FCRL5	1	157497735	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	435311	157497735	91752886	75	146556											
FCRL4	83417	broad.mit.edu	37	chr1	157551201	157551201	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagtgtgtgtgaacgctggGagtggagacttgggagtgga	20	3	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157551201	T	T	157551201	1	4	183	0	1	0	0	0	0	0	0	0	5854	1189	41	3		3	FCRL4	1	157551201	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	53466	157551201	91699420	76	146557											
FCRL2	79368	broad.mit.edu	37	chr1	157737419	157737419	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcatattttccattccCacattcccactagaacagtt	4	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157737419	T	T	157737419	1	4	183	0	1	0	0	0	0	0	0	0	5852	609	21	4		4	FCRL2	1	157737419	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	186218	157737419	91513202	77	146558											
KIRREL	55243	broad.mit.edu	37	chr1	158063219	158063219	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccttggtattcttcctctAccggcgccgcaaaggcagtg	11	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158063219	T	T	158063219	3	4	183	1	0	0	0	0	1	0	0	0	8395	391	14	5	1608	5	KIRREL	1	158063219	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	325800	158063219	91187402	78	146559											
CD1D	912	broad.mit.edu	37	chr1	158151904	158151904	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttccatgtagcatttcaAggaaaagatatcctgagttt	7	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158151904	T	T	158151904	3	4	183	1	0	0	0	0	1	0	0	0	3007	69	3	5	421	5	CD1D	1	158151904	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	88685	158151904	91098717	79	146560											
SPTA1	6708	broad.mit.edu	37	chr1	158583631	158583631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactctttgtgagtcaggCgccctgtcaaattctcatca	9	11	5	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158583631	A	A	158583631	3	1	183	1	0	0	0	0	1	0	0	0	15234	768	27	3	402	3	SPTA1	1	158583631	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	431727	158583631	90666990	80	146561											
SPTA1	6708	broad.mit.edu	37	chr1	158587491	158587491	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaggttatgtggcttaCatgaagcaaaatttcacaga	8	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158587491	G	G	158587491	1	3	183	0	1	0	0	0	0	0	0	0	15234	493	17	4		4	SPTA1	1	158587491	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3860	158587491	90663130	81	146562											
SPTA1	6708	broad.mit.edu	37	chr1	158604244	158604244	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctttcaccagaaaaatGtcctaatattacaggtaaaa	4	8	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158604244	T	T	158604244	1	4	183	0	1	0	0	0	0	0	0	0	15234	1392	48	3		3	SPTA1	1	158604244	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	16753	158604244	90646377	82	146563											
SPTA1	6708	broad.mit.edu	37	chr1	158612178	158612178	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatgtgactttgtagcCcaaaactcatcctgagcttt	6	11	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158612178	T	T	158612178	1	4	183	0	1	0	0	0	0	0	0	0	15234	638	22	4		4	SPTA1	1	158612178	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	7934	158612178	90638443	83	146564											
SPTA1	6708	broad.mit.edu	37	chr1	158644393	158644393	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatctgttggcagctcatcAgcattgatcgcagcagtctt	9	11	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158644393	T	T	158644393	2	4	183	1	0	0	0	0	0	0	0	1	15234	175	7	5		5	SPTA1	1	158644393	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	32215	158644393	90606228	84	146565											
AIM2	9447	broad.mit.edu	37	chr1	159035667	159035667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaatacgttattcttaCtaatcaatatgaaattagat	6	4	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159035667	A	A	159035667	1	1	183	0	1	0	0	0	0	0	0	0	432	580	20	3		3	AIM2	1	159035667	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	391274	159035667	90214954	85	146566											
AIM2	9447	broad.mit.edu	37	chr1	159042975	159042975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatgccatgaaaggaaaGgcccaggcttggcagaaaaa	14	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159042975	T	T	159042975	1	4	183	0	1	0	0	0	0	0	0	0	432	1015	35	2		2	AIM2	1	159042975	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	7308	159042975	90207646	86	146567											
ATP1A4	480	broad.mit.edu	37	chr1	160146346	160146346	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggaacccaaagacggaTaatctggtgaaccaccgtct	9	12	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160146346	A	A	160146346	3	1	183	1	0	0	0	0	1	0	0	0	1135	1403	49	5	2610	5	ATP1A4	1	160146346	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	1103371	160146346	89104275	87	146568											
LY9	4063	broad.mit.edu	37	chr1	160784485	160784485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggacgccggcccctacCatgcctacgtgtgctcagag	12	14	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160784485	A	A	160784485	3	1	183	1	0	0	0	0	1	0	0	0	9189	594	21	2	1152	2	LY9	1	160784485	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	638139	160784485	88466136	88	146569											
FCGR2C	9103	broad.mit.edu	37	chr1	161561213	161561213	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagtctgccaagatgtaGggaggggagaagaggggatg	21	3	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161561213	A	A	161561213	1	1	183	0	1	0	0	0	0	0	0	0	5840	1015	35	4		4	FCGR2C	1	161561213	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	776728	161561213	87689408	89	146570											
RGS4	5999	broad.mit.edu	37	chr1	163042540	163042540	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggatcttagatttcttgcCccaatttttttaccatggca	6	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163042540	T	T	163042540	1	4	183	0	1	0	0	0	0	0	0	0	13416	638	22	4		4	RGS4	1	163042540	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1481327	163042540	86208081	90	146571											
DPT	1805	broad.mit.edu	37	chr1	168670292	168670292	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggttgttgctcctcggaTatagtaatcataattgtagg	11	5	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168670292	A	A	168670292	3	1	183	1	0	0	0	0	1	0	0	0	4779	1406	49	5	111	5	DPT	1	168670292	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	5627752	168670292	80580329	91	146572											
SELP	6403	broad.mit.edu	37	chr1	169566297	169566297	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacattattgggcccctccAgcttaaagccgttgtcacaa	7	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169566297	T	T	169566297	3	4	183	1	0	0	0	0	1	0	0	0	14132	188	7	5	693	5	SELP	1	169566297	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	896005	169566297	79684324	92	146573											
FMO1	2326	broad.mit.edu	37	chr1	171240301	171240301	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagccttcttttcacaaGgctgcttgtcttctgcagca	8	12	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171240301	A	A	171240301	1	1	183	0	1	0	0	0	0	0	0	0	6012	1015	35	4		4	FMO1	1	171240301	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1674004	171240301	78010320	93	146574											
C1orf9	51430	broad.mit.edu	37	chr1	172558355	172558355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtgatttaagtagtaGtatgcaccaggatgacttgg	13	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172558355	T	T	172558355	3	4	183	1	0	0	0	0	1	0	0	0	2089	1029	36	3	2184	3	C1orf9	1	172558355	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1318054	172558355	76692266	94	146575											
PAPPA2	60676	broad.mit.edu	37	chr1	176679324	176679324	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattccctagtaagttaagcCagatgaatagagtcgagcct	9	9	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176679324	A	A	176679324	1	1	183	0	1	0	0	0	0	0	0	0	11527	609	21	2		2	PAPPA2	1	176679324	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4120969	176679324	72571297	95	146576											
PAPPA2	60676	broad.mit.edu	37	chr1	176738883	176738883	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaccaaatttctgaaacgCtgctcaatctcttgtgtccc	7	12	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176738883	T	T	176738883	2	4	183	1	0	0	0	0	0	0	0	1	11527	784	28	4		4	PAPPA2	1	176738883	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	59559	176738883	72511738	96	146577											
ASTN1	460	broad.mit.edu	37	chr1	176927497	176927497	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcacctgacctccacagcatCctccatcacagtcatgtccg	5	18	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176927497	G	G	176927497	3	3	183	1	0	0	0	0	1	0	0	0	1068	855	30	4	2224	4	ASTN1	1	176927497	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	188614	176927497	72323124	97	146578											
ASTN1	460	broad.mit.edu	37	chr1	176998824	176998824	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtaaaaggtcagctgggggtCgttttctgcctctgtgccag	14	9	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176998824	G	G	176998824	3	3	183	1	0	0	0	0	1	0	0	0	1068	884	31	4	2898	4	ASTN1	1	176998824	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	71327	176998824	72251797	98	146579											
KIAA1614	57710	broad.mit.edu	37	chr1	180885793	180885793	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactgcaacagggggagccCgtggcctccagaagccgaat	14	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180885793	T	T	180885793	3	4	183	1	0	0	0	0	1	0	0	0	8318	652	23	4	560	4	KIAA1614	1	180885793	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3886969	180885793	68364828	99	146580											
CACNA1E	777	broad.mit.edu	37	chr1	181546938	181546938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacccacttcaatactcaCgtggacctgaggaccctccg	9	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181546938	A	A	181546938	3	1	183	1	0	0	0	0	1	0	0	0	2568	535	19	3	563	3	CACNA1E	1	181546938	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	661145	181546938	67703683	100	146581											
CACNA1E	777	broad.mit.edu	37	chr1	181724329	181724329	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctaggcaagtatgcagaCcatcacagggttcacacagc	10	12	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181724329	T	T	181724329	1	4	183	0	1	0	0	0	0	0	0	0	2568	522	18	4		4	CACNA1E	1	181724329	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	177391	181724329	67526292	101	146582											
LAMC2	3918	broad.mit.edu	37	chr1	183196112	183196113	+	Intron	INS	-	T	T													gtggaagagagagagctgtgINStaagaaagaccatggctgaa							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183196113	T	T	183196112	6	5	183	0	1	1	1	0	0	0	0	0	8687	1392	48	0		0	LAMC2	1	183196112	Intron	INS	-	TCGA-64-1676-01A-01W-0928-08	1471783	183196112	66054509	102	146583											
C1orf25	81627	broad.mit.edu	37	chr1	185106753	185106753	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttaccttctaccatattacCatccttctgaaaaattctct	1	12	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185106753	G	G	185106753	3	3	183	1	0	0	0	0	1	0	0	0	2056	594	21	4	727	4	C1orf25	1	185106753	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1910641	185106753	64143868	103	146584											
HMCN1	83872	broad.mit.edu	37	chr1	185959564	185959564	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacccagctcatctcaccGttctctccaaggtaggagat	8	13	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185959564	A	A	185959564	2	1	183	1	0	0	0	0	0	0	0	1	7287	1132	40	4		4	HMCN1	1	185959564	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	852811	185959564	63291057	104	146585											
HMCN1	83872	broad.mit.edu	37	chr1	186114898	186114898	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacagtggatggaagttgGggaagctggcatagttggag	17	4	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186114898	T	T	186114898	3	4	183	1	0	0	0	0	1	0	0	0	7287	1241	43	2	14821	2	HMCN1	1	186114898	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	155334	186114898	63135723	105	146586											
TPR	7175	broad.mit.edu	37	chr1	186306081	186306081	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacaaagtgtcagtagttAacacatatttctttaggtgt	8	5	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186306081	C	C	186306081	1	2	183	0	1	0	0	0	0	0	0	0	16540	377	13	5		5	TPR	1	186306081	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	191183	186306081	62944540	106	146587											
FAM5C	339479	broad.mit.edu	37	chr1	190068275	190068275	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttgaggttctagaaatacAaaacagaacgaatctacata	8	6	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190068275	T	T	190068275	1	4	183	0	1	0	0	0	0	0	0	0	5645	145	5	5		5	FAM5C	1	190068275	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	3762194	190068275	59182346	107	146588											
KCNT2	343450	broad.mit.edu	37	chr1	196197364	196197364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatttttatcaaagttgaGtttcctcccgagaatcttga	6	7	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196197364	T	T	196197364	3	4	183	1	0	0	0	0	1	0	0	0	8162	1029	36	3	13	3	KCNT2	1	196197364	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6129089	196197364	53053257	108	146589											
KCNT2	343450	broad.mit.edu	37	chr1	196300263	196300263	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataattttattttgtaaacaAaaaagcatcaacaagtactt	3	5	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196300263	G	G	196300263	1	3	183	0	1	0	0	0	0	0	0	0	8162	29	1	5		5	KCNT2	1	196300263	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	102899	196300263	52950358	109	146590											
PTPRC	5788	broad.mit.edu	37	chr1	198721475	198721475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttcaacttatacccttcGtgtctttgaactgagacatt	5	10	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198721475	T	T	198721475	3	4	183	1	0	0	0	0	1	0	0	0	12905	1145	40	3	3424	3	PTPRC	1	198721475	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2421212	198721475	50529146	110	146591											
LGR6	59352	broad.mit.edu	37	chr1	202245410	202245410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttgccctggattgaccCctctccatcctctcttccac	4	19	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202245410	A	A	202245410	1	1	183	0	1	0	0	0	0	0	0	0	8830	638	22	2		2	LGR6	1	202245410	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3523935	202245410	47005211	111	146592											
PPFIA4	8497	broad.mit.edu	37	chr1	203024729	203024729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgtccccaccactcagcGgccgctccacacctaagctc	8	21	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203024729	T	T	203024729	3	4	183	1	0	0	0	0	1	0	0	0	12408	1116	39	1	491	1	PPFIA4	1	203024729	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	779319	203024729	46225892	112	146593											
MYOG	4656	broad.mit.edu	37	chr1	203053128	203053128	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagggagtgcaggttgtgGgcatctgtagggtcagccgt	19	6	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203053128	T	T	203053128	2	4	183	1	0	0	0	0	0	0	0	1	10184	1219	43	2		2	MYOG	1	203053128	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	28399	203053128	46197493	113	146594											
REN	5972	broad.mit.edu	37	chr1	204128529	204128529	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagtcccagtccccacctGttgtagtagaaagagaagac	11	10	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204128529	A	A	204128529	2	1	183	1	0	0	0	0	0	0	0	1	13332	1368	48	4		4	REN	1	204128529	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1075401	204128529	45122092	114	146595											
CDK18	5129	broad.mit.edu	37	chr1	205499522	205499522	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggccacccagaaccaaggaAaggggttggtgagtgtgggc	18	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205499522	C	C	205499522	1	2	183	0	1	0	0	0	0	0	0	0	3164	29	1	5		5	CDK18	1	205499522	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1370993	205499522	43751099	115	146596											
MFSD4	148808	broad.mit.edu	37	chr1	205538353	205538353	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgcacagctcgctgccccaGatctcctgggtcttcttctc	8	17	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205538353	C	C	205538353	3	2	183	1	0	0	0	0	1	0	0	0	9626	933	33	4	158	4	MFSD4	1	205538353	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	38831	205538353	43712268	116	146597											
IRF6	3664	broad.mit.edu	37	chr1	209968832	209968832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccctgcagctgacccacCattcaagctagggactgcta	8	16	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209968832	A	A	209968832	1	1	183	0	1	0	0	0	0	0	0	0	7904	609	21	2		2	IRF6	1	209968832	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4430479	209968832	39281789	117	146598											
USH2A	7399	broad.mit.edu	37	chr1	216257909	216257909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatatatttgtgtgcaccaTtggaataactaagtatttct	7	5	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216257909	A	A	216257909	1	1	183	0	1	0	0	0	0	0	0	0	17162	1508	52	5		5	USH2A	1	216257909	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	6289077	216257909	32992712	118	146599											
USH2A	7399	broad.mit.edu	37	chr1	216419857	216419857	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccacaaaccagaaacaGggagaagttacctaagttaa	9	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216419857	T	T	216419857	1	4	183	0	1	0	0	0	0	0	0	0	17162	1015	35	2		2	USH2A	1	216419857	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	161948	216419857	32830764	119	146600											
ESRRG	2104	broad.mit.edu	37	chr1	217241628	217241628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttcaattgaggaccaaGtcagaatccttgcaccatct	6	11	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217241628	T	T	217241628	1	4	183	0	1	0	0	0	0	0	0	0	5304	1044	36	3		3	ESRRG	1	217241628	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	821771	217241628	32008993	120	146601											
SPATA17	128153	broad.mit.edu	37	chr1	217955584	217955584	+	Frame_Shift_Del	DEL	G	-	-													ttggagccaacgttgcgggtGgcagaaccaatcgatgagtt							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	217955584	-	-	217955584	7	5	183	1	0	1	0	1	0	0	0	0	15118	1335	47	0	822	0	SPATA17	1	217955584	Frame_Shift_Del	DEL	G	TCGA-64-1676-01A-01W-0928-08	713956	217955584	31295037	121	146602											
HHIPL2	79802	broad.mit.edu	37	chr1	222713410	222713410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaaacccttcctttgctctCcagccatagtttccaccttt	4	16	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222713410	A	A	222713410	3	1	183	1	0	0	0	0	1	0	0	0	7161	856	30	3	806	3	HHIPL2	1	222713410	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4757826	222713410	26537211	122	146603											
C1orf55	163859	broad.mit.edu	37	chr1	226176062	226176062	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcagagttggacccttcTgcagtctctagtccctccat	7	15	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226176062	G	G	226176062	2	3	183	1	0	0	0	0	0	0	0	1	2069	1567	55	5		5	C1orf55	1	226176062	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	3462652	226176062	23074559	123	146604											
ITPKB	3707	broad.mit.edu	37	chr1	226822507	226822507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggccctcaggcaggggCgtggttttcccaaagtcgat	14	11	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226822507	A	A	226822507	2	1	183	1	0	0	0	0	0	0	0	1	7988	755	27	3		3	ITPKB	1	226822507	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	646445	226822507	22428114	124	146605											
CDC42BPA	8476	broad.mit.edu	37	chr1	227219083	227219083	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatagactgagcggtctcTgaatttgtttttcttcaaaa	7	7	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227219083	G	G	227219083	2	3	183	1	0	0	0	0	0	0	0	1	3102	1588	55	5		5	CDC42BPA	1	227219083	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	396576	227219083	22031538	125	146606											
OBSCN	84033	broad.mit.edu	37	chr1	228509335	228509335	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagatgtgcgagcccgctgGctgaaggatggtgtggagct	18	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228509335	C	C	228509335	3	2	183	1	0	0	0	0	1	0	0	0	10907	1212	42	4	15007	4	OBSCN	1	228509335	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1290252	228509335	20741286	126	146607											
ACTA1	58	broad.mit.edu	37	chr1	229568343	229568343	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagagggacagcacggcctgGatggccacgtacatggcggg	17	10	0	1	rs121909526		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229568343	T	T	229568343	2	4	183	1	0	0	0	0	0	0	0	1	191	1164	41	3		3	ACTA1	1	229568343	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1059008	229568343	19682278	127	146608											
AGT	183	broad.mit.edu	37	chr1	230846667	230846667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtgccatctaaccagaTctttcattgtctcaatattc	4	10	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230846667	C	C	230846667	1	2	183	0	1	0	0	0	0	0	0	0	399	1450	50	5		5	AGT	1	230846667	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1278324	230846667	18403954	128	146609											
NID1	4811	broad.mit.edu	37	chr1	236192920	236192920	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccgaacggaatctgcggCacgcggccctccagctccgt	13	16	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236192920	A	A	236192920	2	1	183	1	0	0	0	0	0	0	0	1	10509	697	25	3		3	NID1	1	236192920	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	5346253	236192920	13057701	129	146610											
ACTN2	88	broad.mit.edu	37	chr1	236907995	236907995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtgcgggctctgctgcGgaagcacgaggcgttcgaga	18	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236907995	T	T	236907995	3	4	183	1	0	0	0	0	1	0	0	0	205	1116	39	1	1371	1	ACTN2	1	236907995	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	715075	236907995	12342626	130	146611											
RYR2	6262	broad.mit.edu	37	chr1	237659695	237659695	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcctaggcaacagagcAagactctgtctcaataaaat	7	10	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237659695	C	C	237659695	1	2	183	0	1	0	0	0	0	0	0	0	13880	145	5	5		5	RYR2	1	237659695	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	751700	237659695	11590926	131	146612											
RYR2	6262	broad.mit.edu	37	chr1	237713847	237713847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgttttcctgcaggacGtaaagaacagaagaaatcct	9	9	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237713847	T	T	237713847	3	4	183	1	0	0	0	0	1	0	0	0	13880	1145	40	3	3176	3	RYR2	1	237713847	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	54152	237713847	11536774	132	146613											
RYR2	6262	broad.mit.edu	37	chr1	237817571	237817571	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttataattgttttcccacaTagctgctgacaaatcattat	4	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237817571	A	A	237817571	1	1	183	0	1	0	0	0	0	0	0	0	13880	1421	49	5		5	RYR2	1	237817571	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	103724	237817571	11433050	133	146614											
RYR2	6262	broad.mit.edu	37	chr1	237951302	237951302	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataggggagaagatggagAaaaagaagagaaagccaagg	15	3	1	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237951302	C	C	237951302	3	2	183	1	0	0	0	0	1	0	0	0	13880	246	9	5	13709	5	RYR2	1	237951302	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	133731	237951302	11299319	134	146615											
ZP4	57829	broad.mit.edu	37	chr1	238053457	238053457	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagtcattctgcagctcGtgcagcagcccttggttgtc	12	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053457	T	T	238053457	3	4	183	1	0	0	0	0	1	0	0	0	18347	1136	40	3	1471	3	ZP4	1	238053457	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	102155	238053457	11197164	135	146616											
FMN2	56776	broad.mit.edu	37	chr1	240458064	240458065	+	Intron	INS	-	A	A													agcctgctgcctgagatggtINScaaacatcttttcacaggtg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240458065	A	A	240458064	6	5	183	0	1	1	1	0	0	0	0	0	6008	1682	58	0		0	FMN2	1	240458064	Intron	INS	-	TCGA-64-1676-01A-01W-0928-08	2404607	240458064	8792557	136	146617											
FMN2	56776	broad.mit.edu	37	chr1	240519039	240519039	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacagaattttctaacattAgctaagatgttttcaaaatt	4	5	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240519039	T	T	240519039	1	4	183	0	1	0	0	0	0	0	0	0	6008	435	15	5		5	FMN2	1	240519039	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	60975	240519039	8731582	137	146618											
ADSS	159	broad.mit.edu	37	chr1	244600114	244600114	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactggttaccaagtagactCattctttcataccttttcct	4	11	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244600114	A	A	244600114	1	1	183	0	1	0	0	0	0	0	0	0	347	841	29	3		3	ADSS	1	244600114	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4081075	244600114	4650507	138	146619											
NLRP3	114548	broad.mit.edu	37	chr1	247587961	247587961	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggagaacgaggtcctcTtcaccatgtgcttcatcccc	8	14	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247587961	C	C	247587961	3	2	183	1	0	0	0	0	1	0	0	0	10573	1609	56	5	1226	5	NLRP3	1	247587961	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	2987847	247587961	1662660	139	146620											
OR13G1	441933	broad.mit.edu	37	chr1	247835510	247835510	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgggtttaatgtgggagtCacaagagtatagagtgcagc	14	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247835510	A	A	247835510	2	1	183	1	0	0	0	0	0	0	0	1	11036	813	29	3		3	OR13G1	1	247835510	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	247549	247835510	1415111	140	146621											
TRIM58	25893	broad.mit.edu	37	chr1	248028078	248028078	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggctttctggcccaggaGgagcaacggcagctgaggcg	17	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248028078	A	A	248028078	2	1	183	1	0	0	0	0	0	0	0	1	16656	991	35	4		4	TRIM58	1	248028078	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	192568	248028078	1222543	141	146622											
OR2L8	391190	broad.mit.edu	37	chr1	248112202	248112202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactgatttcatcttattgGggctgtttccaccatcaaga	7	10	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248112202	T	T	248112202	3	4	183	1	0	0	0	0	1	0	0	0	11103	1232	43	2	45	2	OR2L8	1	248112202	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	84124	248112202	1138419	142	146623											
OR2L13	284521	broad.mit.edu	37	chr1	248138836	248138836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatctccaacagaggacaaGgttctggctgtgttctacac	9	11	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248138836	T	T	248138836	1	4	183	0	1	0	0	0	0	0	0	0	11100	1015	35	2		2	OR2L13	1	248138836	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	26634	248138836	1111785	143	146624											
OR14I1	401994	broad.mit.edu	37	chr1	248844970	248844970	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttggaaataggagatcatCatgagaataaagcatcccag	9	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248844970	A	A	248844970	3	1	183	1	0	0	0	0	1	0	0	0	11041	826	29	3	303	3	OR14I1	1	248844970	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	706134	248844970	405651	144	146625											
OR14I1	401994	broad.mit.edu	37	chr1	248845065	248845065	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaaccagggccaacacatGagggatgtcacggaagaact	13	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248845065	A	A	248845065	3	1	183	1	0	0	0	0	1	0	0	0	11041	1290	45	4	398	4	OR14I1	1	248845065	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	95	248845065	405556	145	146626											
MYT1L	23040	broad.mit.edu	37	chr2	1915753	1915753	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcatggagagcagccGgtgctccctcccacaccagt	12	14	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1915753	A	A	1915753	1	1	183	0	1	0	0	0	0	0	0	0	10201	1131	39	4		4	MYT1L	2	1915753	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08		1915753	241283620	146	146627											
TTC15	51112	broad.mit.edu	37	chr2	3428348	3428348	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgggccttttccagaatgCtgagatggaatttgaaccct	11	8	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3428348	T	T	3428348	3	4	183	1	0	0	0	0	1	0	0	0	16808	797	28	4	1345	4	TTC15	2	3428348	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1512595	3428348	239771025	147	146628											
GRHL1	29841	broad.mit.edu	37	chr2	10103950	10103950	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatagcaaatgctatttataAtatgatgtatagcaagcttc	7	5	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10103950	G	G	10103950	1	3	183	0	1	0	0	0	0	0	0	0	6829	116	4	5		5	GRHL1	2	10103950	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	6675602	10103950	233095423	148	146629											
NBAS	51594	broad.mit.edu	37	chr2	15470780	15470780	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgcccatcactgacggccTgcagcaccgctttggtggtg	12	14	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15470780	A	A	15470780	3	1	183	1	0	0	0	0	1	0	0	0	10280	1580	55	5	2894	5	NBAS	2	15470780	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	5366830	15470780	227728593	149	146630											
RAD51AP2	729475	broad.mit.edu	37	chr2	17699755	17699755	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataggcggttccgggccgctCtggtcacgcccctgacccgc	13	17	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17699755	A	A	17699755	1	1	183	0	1	0	0	0	0	0	0	0	13095	928	32	3		3	RAD51AP2	2	17699755	5'Flank	SNP	C	TCGA-64-1676-01A-01W-0928-08	2228975	17699755	225499618	150	146631											
ITSN2	50618	broad.mit.edu	37	chr2	24427344	24427344	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaggtaaaacgaagcgactGacagtgccctccctgagcag	12	12	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24427344	A	A	24427344	1	1	183	0	1	0	0	0	0	0	0	0	7997	1305	45	4		4	ITSN2	2	24427344	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	6727589	24427344	218772029	151	146632											
SUPT7L	9913	broad.mit.edu	37	chr2	27884203	27884203	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaactcccgtgggagcaaatCgaaggaacttctgttggtct	12	9	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27884203	A	A	27884203	3	1	183	1	0	0	0	0	1	0	0	0	15519	884	31	3	1193	3	SUPT7L	2	27884203	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3456859	27884203	215315170	152	146633											
CAPN13	92291	broad.mit.edu	37	chr2	30955326	30955326	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatggcttcaagccgcatCaggaagcagaccaggctggg	14	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30955326	A	A	30955326	2	1	183	1	0	0	0	0	0	0	0	1	2652	813	29	3		3	CAPN13	2	30955326	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	3071123	30955326	212244047	153	146634											
XDH	7498	broad.mit.edu	37	chr2	31567666	31567666	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggaaccctgacctgccacTaagctttcaggagctcacct	8	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31567666	A	A	31567666	1	1	183	0	1	0	0	0	0	0	0	0	17553	1537	53	5		5	XDH	2	31567666	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	612340	31567666	211631707	154	146635											
PLEKHH2	130271	broad.mit.edu	37	chr2	43980795	43980795	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctcgtggagagactgatAgagaaaagttgctgttaatg	13	4	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43980795	G	G	43980795	3	3	183	1	0	0	0	0	1	0	0	0	12172	412	15	5	3785	5	PLEKHH2	2	43980795	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	12413129	43980795	199218578	155	146636											
EPAS1	2034	broad.mit.edu	37	chr2	46611777	46611777	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaaggaggggacctcctcaGagccctggaccaggccacct	13	15	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46611777	T	T	46611777	3	4	183	1	0	0	0	0	1	0	0	0	5192	942	33	3	2653	3	EPAS1	2	46611777	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2630982	46611777	196587596	156	146637											
KLRAQ1	129285	broad.mit.edu	37	chr2	48734332	48734332	+	Intron	DEL	T	-	-													agaatgtacaaaatgttgtcTttttttttttttttttctag							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48734332	-	-	48734332	6	5	183	0	1	1	0	1	0	0	0	0	8484	1624	56	0		0	KLRAQ1	2	48734332	Intron	DEL	T	TCGA-64-1676-01A-01W-0928-08	2122555	48734332	194465041	157	146638											
NRXN1	9378	broad.mit.edu	37	chr2	51149829	51149829	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcaggtgcgccagaccttGaagggaaacaagagcacagt	12	10	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51149829	A	A	51149829	1	1	183	0	1	0	0	0	0	0	0	0	10760	1305	45	4		4	NRXN1	2	51149829	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2415497	51149829	192049544	158	146639											
PSME4	23198	broad.mit.edu	37	chr2	54161615	54161615	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatgagcttgctaaatcaGaaaatatccaagaatcaagt	6	7	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54161615	A	A	54161615	1	1	183	0	1	0	0	0	0	0	0	0	12815	957	33	4		4	PSME4	2	54161615	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3011786	54161615	189037758	159	146640											
SPTBN1	6711	broad.mit.edu	37	chr2	54848483	54848483	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatttgttcctgctacctGggtggggcacagtagcatgc	13	10	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54848483	T	T	54848483	1	4	183	0	1	0	0	0	0	0	0	0	15237	1363	47	2		2	SPTBN1	2	54848483	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	686868	54848483	188350890	160	146641											
CCDC88A	55704	broad.mit.edu	37	chr2	55549736	55549736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcttgactttctcgctcCcatttgttgtcttcaccaga	6	12	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55549736	A	A	55549736	3	1	183	1	0	0	0	0	1	0	0	0	2891	624	22	2	2585	2	CCDC88A	2	55549736	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	701253	55549736	187649637	161	146642											
BCL11A	53335	broad.mit.edu	37	chr2	60773198	60773198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggatgccaacctccacgGgattggatgcttttttcatc	9	12	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60773198	T	T	60773198	3	4	183	1	0	0	0	0	1	0	0	0	1368	1232	43	2	2332	2	BCL11A	2	60773198	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	5223462	60773198	182426175	162	146643											
C2orf86	51057	broad.mit.edu	37	chr2	63401728	63401728	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacattttgaaatattcttgCtttgctattagttcgcattt	6	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63401728	T	T	63401728	1	4	183	0	1	0	0	0	0	0	0	0	2223	812	28	4		4	C2orf86	2	63401728	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2628530	63401728	179797645	163	146644											
ADD2	119	broad.mit.edu	37	chr2	70904798	70904798	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgtgagatgtcagcgagtCaggcacatcctgggaactca	12	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70904798	G	G	70904798	1	3	183	0	1	0	0	0	0	0	0	0	305	841	29	4		4	ADD2	2	70904798	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	7503070	70904798	172294575	164	146645											
DYSF	8291	broad.mit.edu	37	chr2	71795056	71795056	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcctgaaggggactgtggGtttctgtccttctctggtac	13	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71795056	A	A	71795056	1	1	183	0	1	0	0	0	0	0	0	0	4899	1276	44	4		4	DYSF	2	71795056	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	890258	71795056	171404317	165	146646											
DYSF	8291	broad.mit.edu	37	chr2	71795292	71795292	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcacgcctcattcttcctGgccctccagtatgagaacga	8	15	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71795292	T	T	71795292	1	4	183	0	1	0	0	0	0	0	0	0	4899	1363	47	2		2	DYSF	2	71795292	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	236	71795292	171404081	166	146647											
DYSF	8291	broad.mit.edu	37	chr2	71827833	71827833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctacgcttggtctaggGtgcagacgagtttatgggtc	13	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71827833	T	T	71827833	3	4	183	1	0	0	0	0	1	0	0	0	4899	1275	44	3	4030	3	DYSF	2	71827833	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	32541	71827833	171371540	167	146648											
EXOC6B	23233	broad.mit.edu	37	chr2	73052880	73052880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgacccagaggagcctgccCcgtcccgcccgttcccgccc	10	23	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73052880	A	A	73052880	1	1	183	0	1	0	0	0	0	0	0	0	5351	638	22	2		2	EXOC6B	2	73052880	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1225047	73052880	170146493	168	146649											
LRRTM4	80059	broad.mit.edu	37	chr2	77745991	77745991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccgcacatatcatggtgCtttccttatttcctttgaaa	6	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745991	A	A	77745991	3	1	183	1	0	0	0	0	1	0	0	0	9129	797	28	3	782	3	LRRTM4	2	77745991	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4693111	77745991	165453382	169	146650											
REG1A	5967	broad.mit.edu	37	chr2	79349036	79349036	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactctgctgtcctttttctGacccgtcctcttggaggact	8	13	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79349036	T	T	79349036	1	4	183	0	1	0	0	0	0	0	0	0	13318	1305	45	3		3	REG1A	2	79349036	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1603045	79349036	163850337	170	146651											
REG1A	5967	broad.mit.edu	37	chr2	79350265	79350265	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagttgtaactcttctcattGacttataggattccagaaat	6	8	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79350265	T	T	79350265	1	4	183	0	1	0	0	0	0	0	0	0	13318	1305	45	3		3	REG1A	2	79350265	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1229	79350265	163849108	171	146652											
ATOH8	84913	broad.mit.edu	37	chr2	85991289	85991289	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccctgcaggccgagggacGtgccaagaagcgcaaggtat	14	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85991289	C	C	85991289	3	2	183	1	0	0	0	0	1	0	0	0	1118	1145	40	4	950	4	ATOH8	2	85991289	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6641024	85991289	157208084	172	146653											
CD8A	925	broad.mit.edu	37	chr2	87017643	87017643	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgttttgggagaggtataGgaggaaggtgggactggcgg	20	3	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87017643	C	C	87017643	3	2	183	1	0	0	0	0	1	0	0	0	3074	991	35	4	516	4	CD8A	2	87017643	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1026354	87017643	156181730	173	146654											
RGPD1	400966	broad.mit.edu	37	chr2	87157744	87157744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcagcagccagtctccCcgcagcagtgaacactctca	10	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87157744	A	A	87157744	1	1	183	0	1	0	0	0	0	0	0	0	13393	638	22	2		2	RGPD1	2	87157744	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	140101	87157744	156041629	174	146655											
KCNIP3	30818	broad.mit.edu	37	chr2	96040851	96040851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgagccgccaggcagccCcgacacaccccagcctcttc	9	19	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96040851	T	T	96040851	1	4	183	0	1	0	0	0	0	0	0	0	8111	638	22	4		4	KCNIP3	2	96040851	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8883107	96040851	147158522	175	146656											
VWA3B	200403	broad.mit.edu	37	chr2	98928536	98928536	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaacatcgcttatctcaGgaacaccctgaaatcccttt	4	14	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98928536	A	A	98928536	1	1	183	0	1	0	0	0	0	0	0	0	17368	1015	35	4		4	VWA3B	2	98928536	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2887685	98928536	144270837	176	146657											
NMS	129521	broad.mit.edu	37	chr2	101089990	101089990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcagtgggcacctctttctCgccaacctaaggtaaaaaaa	8	11	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101089990	A	A	101089990	3	1	183	1	0	0	0	0	1	0	0	0	10597	884	31	3	182	3	NMS	2	101089990	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2161454	101089990	142109383	177	146658											
CCDC138	165055	broad.mit.edu	37	chr2	109432344	109432344	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaatttaaggtttgtctttGaagttttatgaagttgtgaa	9	2	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109432344	T	T	109432344	1	4	183	0	1	0	0	0	0	0	0	0	2798	1305	45	3		3	CCDC138	2	109432344	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	8342354	109432344	133767029	178	146659											
MERTK	10461	broad.mit.edu	37	chr2	112778849	112778849	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctcacttgctctgccAttggtcccaatgcagcatgc	9	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112778849	C	C	112778849	1	2	183	0	1	0	0	0	0	0	0	0	9572	232	8	5		5	MERTK	2	112778849	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	3346505	112778849	130420524	179	146660											
POLR1B	84172	broad.mit.edu	37	chr2	113304689	113304689	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttccaaaagggaccatctGcaaagaggccaatgtttatc	9	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113304689	C	C	113304689	3	2	183	1	0	0	0	0	1	0	0	0	12305	1319	46	4	284	4	POLR1B	2	113304689	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	525840	113304689	129894684	180	146661											
MARCO	8685	broad.mit.edu	37	chr2	119727850	119727850	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagtcctgcaggcccaactCacctgggtccgcgtcagcca	10	17	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119727850	A	A	119727850	2	1	183	1	0	0	0	0	0	0	0	1	9403	813	29	3		3	MARCO	2	119727850	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	6423161	119727850	123471523	181	146662											
MARCO	8685	broad.mit.edu	37	chr2	119749443	119749443	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggccagaagggagaccaggGagtgaaaggtaaggcctctg	17	7	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119749443	T	T	119749443	3	4	183	1	0	0	0	0	1	0	0	0	9403	1174	41	3	1253	3	MARCO	2	119749443	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	21593	119749443	123449930	182	146663											
C1QL2	165257	broad.mit.edu	37	chr2	119914654	119914654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacgggcctcccgcctgCtgcttcagggtccacactcc	9	19	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119914654	A	A	119914654	1	1	183	0	1	0	0	0	0	0	0	0	1979	812	28	3		3	C1QL2	2	119914654	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	165211	119914654	123284719	183	146664											
CNTNAP5	129684	broad.mit.edu	37	chr2	125281944	125281944	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggaggaaccgcatcacGctcactctggatgatgaagc	12	12	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125281944	T	T	125281944	2	4	183	1	0	0	0	0	0	0	0	1	3682	1074	38	3		3	CNTNAP5	2	125281944	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	5367290	125281944	117917429	184	146665											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530309	125530309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttacaatcgtttctcccaCtcaagcctgtgccttgaatg	6	13	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530309	A	A	125530309	1	1	183	0	1	0	0	0	0	0	0	0	3682	580	20	3		3	CNTNAP5	2	125530309	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	248365	125530309	117669064	185	146666											
SAP130	79595	broad.mit.edu	37	chr2	128707376	128707376	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattgtggttctgtttttcTcttctattttaattaagttt	5	4	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128707376	C	C	128707376	1	2	183	0	1	0	0	0	0	0	0	0	13942	1566	54	5		5	SAP130	2	128707376	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	3177067	128707376	114491997	186	146667											
GPR148	344561	broad.mit.edu	37	chr2	131487640	131487640	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctcctggcagctaacagtGaggtactcatgatgcttccc	11	12	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131487640	T	T	131487640	4	4	183	1	0	0	0	0	0	1	0	0	6718	1291	45	3	918	3	GPR148	2	131487640	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2780264	131487640	111711733	187	146668											
FAM123C	205147	broad.mit.edu	37	chr2	131520903	131520903	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgggacagctacagtgggGacgccctctacgagctcttc	12	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131520903	T	T	131520903	3	4	183	1	0	0	0	0	1	0	0	0	5470	1174	41	3	1260	3	FAM123C	2	131520903	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	33263	131520903	111678470	188	146669											
PLEKHB2	55041	broad.mit.edu	37	chr2	131953181	131953181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactattacactatattacCtggatgaaatttaccaaagt	4	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131953181	A	A	131953181	1	1	183	0	1	0	0	0	0	0	0	0	12160	696	24	2		2	PLEKHB2	2	131953181	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	432278	131953181	111246192	189	146670											
MGAT5	4249	broad.mit.edu	37	chr2	135077583	135077583	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagatgttcttcctgtgtAcaagcagcctgcataggatc	10	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135077583	G	G	135077583	1	3	183	0	1	0	0	0	0	0	0	0	9641	406	14	5		5	MGAT5	2	135077583	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	3124402	135077583	108121790	190	146671											
MCM6	4175	broad.mit.edu	37	chr2	136626440	136626440	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctctcgaatcctgtttaaaGacaaatgtcccattagtaaa	6	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136626440	C	C	136626440	1	2	183	0	1	0	0	0	0	0	0	0	9484	957	33	4		4	MCM6	2	136626440	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1548857	136626440	106572933	191	146672											
LRP1B	53353	broad.mit.edu	37	chr2	140995750	140995750	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctatcataaagccaggatCtaaaagacctccatcgttgt	7	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995750	A	A	140995750	3	1	183	1	0	0	0	0	1	0	0	0	9042	913	32	3	280	3	LRP1B	2	140995750	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4369310	140995750	102203623	192	146673											
LRP1B	53353	broad.mit.edu	37	chr2	141459809	141459809	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattccctccagtctcaaggTcgattctctctatcttgtct	6	13	5	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141459809	C	C	141459809	3	2	183	1	0	0	0	0	1	0	0	0	9042	1667	58	5	7808	5	LRP1B	2	141459809	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	464059	141459809	101739564	193	146674											
LRP1B	53353	broad.mit.edu	37	chr2	141526927	141526927	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatacctaaatgcagggcCggagataagggggggaaggg	17	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141526927	A	A	141526927	1	1	183	0	1	0	0	0	0	0	0	0	9042	667	23	1		1	LRP1B	2	141526927	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	67118	141526927	101672446	194	146675											
LRP1B	53353	broad.mit.edu	37	chr2	142567892	142567892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcagggcagtcagggtccCcatcacacagccagctctgg	11	15	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142567892	T	T	142567892	3	4	183	1	0	0	0	0	1	0	0	0	9042	623	22	4	13998	4	LRP1B	2	142567892	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1040965	142567892	100631481	195	146676											
ARHGAP15	55843	broad.mit.edu	37	chr2	144314076	144314076	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagtgatttccacttcagaGattttttcaaacagtttcat	5	7	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144314076	T	T	144314076	1	4	183	0	1	0	0	0	0	0	0	0	868	957	33	3		3	ARHGAP15	2	144314076	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1746184	144314076	98885297	196	146677											
ARHGAP15	55843	broad.mit.edu	37	chr2	144525526	144525526	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacttcacttcaaactccaGtgaaattatttttttttctc	2	9	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144525526	C	C	144525526	1	2	183	0	1	0	0	0	0	0	0	0	868	1044	36	4		4	ARHGAP15	2	144525526	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	211450	144525526	98673847	197	146678											
ZEB2	9839	broad.mit.edu	37	chr2	145274897	145274897	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgcaccgggggccatcCgccatgatcggctgcttcat	11	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145274897	A	A	145274897	2	1	183	1	0	0	0	0	0	0	0	1	17750	639	23	1		1	ZEB2	2	145274897	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	749371	145274897	97924476	198	146679											
ACVR2A	92	broad.mit.edu	37	chr2	148657174	148657174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacgtaggtttgctcaactGtagattggaaacaaaatata	8	5	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148657174	T	T	148657174	1	4	183	0	1	0	0	0	0	0	0	0	223	1392	48	3		3	ACVR2A	2	148657174	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3382277	148657174	94542199	199	146680											
NEB	4703	broad.mit.edu	37	chr2	152566225	152566225	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatactctggtgtttcggtcTgcatgaagtagatctggtct	11	7	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152566225	A	A	152566225	3	1	183	1	0	0	0	0	1	0	0	0	10397	1580	55	5	25390	5	NEB	2	152566225	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	3909051	152566225	90633148	200	146681											
CYTIP	9595	broad.mit.edu	37	chr2	158286961	158286961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctaaagctccggtgcacTgcctcactccgtcttgtaat	7	14	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158286961	A	A	158286961	1	1	183	0	1	0	0	0	0	0	0	0	4240	1595	55	5		5	CYTIP	2	158286961	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	5720736	158286961	84912412	201	146682											
UPP2	151531	broad.mit.edu	37	chr2	158991222	158991222	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctatagaaaagatgaaCccattcattccatcagttgt	6	9	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158991222	A	A	158991222	1	1	183	0	1	0	0	0	0	0	0	0	17139	522	18	3		3	UPP2	2	158991222	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	704261	158991222	84208151	202	146683											
BAZ2B	29994	broad.mit.edu	37	chr2	160229615	160229615	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attggggaagaatccagtacCggcgtctgtaacgatcttgg	13	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160229615	G	G	160229615	3	3	183	1	0	0	0	0	1	0	0	0	1337	652	23	4	2396	4	BAZ2B	2	160229615	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1238393	160229615	82969758	203	146684											
BAZ2B	29994	broad.mit.edu	37	chr2	160294973	160294973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacattggacaccaatccCgtagactgtattacactggt	7	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160294973	A	A	160294973	2	1	183	1	0	0	0	0	0	0	0	1	1337	639	23	1		1	BAZ2B	2	160294973	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	65358	160294973	82904400	204	146685											
LY75	4065	broad.mit.edu	37	chr2	160741774	160741774	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catccattcttgcacagctgGagccacctatagtaggtgca	9	12	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160741774	A	A	160741774	3	1	183	1	0	0	0	0	1	0	0	0	9187	1174	41	4	4344	4	LY75	2	160741774	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	446801	160741774	82457599	205	146686											
TANK	10010	broad.mit.edu	37	chr2	162091767	162091767	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaatatatatgcccatgcGtaactcattcagaaattcaa	4	9	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162091767	A	A	162091767	1	1	183	0	1	0	0	0	0	0	0	0	15665	1160	40	4		4	TANK	2	162091767	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1349993	162091767	81107606	206	146687											
SLC4A10	57282	broad.mit.edu	37	chr2	162661084	162661084	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagattcaggattagaggatGgaagggagtcaccttctttt	13	5	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162661084	T	T	162661084	4	4	183	1	0	0	0	0	0	1	0	0	14765	1349	47	2	351	2	SLC4A10	2	162661084	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	569317	162661084	80538289	207	146688											
GRB14	2888	broad.mit.edu	37	chr2	165430218	165430218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagttaggagcctctgacCtgctattctaattaagtttc	7	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165430218	A	A	165430218	1	1	183	0	1	0	0	0	0	0	0	0	6823	696	24	2		2	GRB14	2	165430218	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2769134	165430218	77769155	208	146689											
SCN2A	6326	broad.mit.edu	37	chr2	166198918	166198918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttttattgtgagccttaGtttaatggaacttggtttgg	12	3	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166198918	T	T	166198918	3	4	183	1	0	0	0	0	1	0	0	0	14029	1029	36	3	2651	3	SCN2A	2	166198918	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	768700	166198918	77000455	209	146690											
SCN7A	6332	broad.mit.edu	37	chr2	167327216	167327216	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtatcttataataacCctgtggaattaaattagagt	9	4	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167327216	A	A	167327216	3	1	183	1	0	0	0	0	1	0	0	0	14036	637	22	2	4555	2	SCN7A	2	167327216	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1128298	167327216	75872157	210	146691											
XIRP2	129446	broad.mit.edu	37	chr2	168074611	168074611	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcaactatttttaaaaTagcttcagaatcccatcctg	4	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168074611	A	A	168074611	1	1	183	0	1	0	0	0	0	0	0	0	17557	1421	49	5		5	XIRP2	2	168074611	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	747395	168074611	75124762	211	146692											
B3GALT1	8708	broad.mit.edu	37	chr2	168726315	168726315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcatttacaagacctcaCtccacacaaggctgcttcac	4	15	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168726315	A	A	168726315	3	1	183	1	0	0	0	0	1	0	0	0	1252	565	20	3	768	3	B3GALT1	2	168726315	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	651704	168726315	74473058	212	146693											
ABCB11	8647	broad.mit.edu	37	chr2	169830485	169830485	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatgcccccaaagcaacgtCcactgaaatccatcaaaaac	5	14	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169830485	A	A	169830485	1	1	183	0	1	0	0	0	0	0	0	0	42	870	30	3		3	ABCB11	2	169830485	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1104170	169830485	73368888	213	146694											
ABCB11	8647	broad.mit.edu	37	chr2	169836338	169836338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccccaccccccagcccCcacctgttaatggcctttac	6	20	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169836338	A	A	169836338	1	1	183	0	1	0	0	0	0	0	0	0	42	638	22	2		2	ABCB11	2	169836338	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5853	169836338	73363035	214	146695											
LRP2	4036	broad.mit.edu	37	chr2	170112576	170112576	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactattgtaacttgcaatGtataaaaacaatacatactt	3	6	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170112576	A	A	170112576	1	1	183	0	1	0	0	0	0	0	0	0	9043	1392	48	4		4	LRP2	2	170112576	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	276238	170112576	73086797	215	146696											
MYO3B	140469	broad.mit.edu	37	chr2	171509600	171509600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccttcctttttttcttcatCctcaaaaggagactcttttg	4	12	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171509600	A	A	171509600	3	1	183	1	0	0	0	0	1	0	0	0	10171	855	30	3	4259	3	MYO3B	2	171509600	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1397024	171509600	71689773	216	146697											
HNRNPA3	220988	broad.mit.edu	37	chr2	178080660	178080660	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgtaatatgtgaaattGttgtgaaagtttgtttcttg	10	1	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178080660	T	T	178080660	1	4	183	0	1	0	0	0	0	0	0	0	7327	1392	48	3		3	HNRNPA3	2	178080660	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	6571060	178080660	65118713	217	146698											
RBM45	129831	broad.mit.edu	37	chr2	178977516	178977516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagctcacaggcctgcagGgccatggaggagatgcatgg	16	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178977516	T	T	178977516	3	4	183	1	0	0	0	0	1	0	0	0	13247	1223	43	2	245	2	RBM45	2	178977516	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	896856	178977516	64221857	218	146699											
TTN	7273	broad.mit.edu	37	chr2	179427841	179427841	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcgagttctatttctGgtggctctatcctctcctga	8	12	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179427841	A	A	179427841	3	1	183	1	0	0	0	0	1	0	0	0	16861	1348	47	4	25109	4	TTN	2	179427841	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	450325	179427841	63771532	219	146700											
TTN	7273	broad.mit.edu	37	chr2	179433781	179433781	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcacttctgcaaccttaAttggatcagcagtctgggca	11	10	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179433781	C	C	179433781	3	2	183	1	0	0	0	0	1	0	0	0	16861	101	4	5	31049	5	TTN	2	179433781	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	5940	179433781	63765592	220	146701											
TTN	7273	broad.mit.edu	37	chr2	179452755	179452755	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtaacagtgaattccttgcGtacaagctgtgctgcagcat	11	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179452755	C	C	179452755	3	2	183	1	0	0	0	0	1	0	0	0	16861	1145	40	4	44832	4	TTN	2	179452755	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	18974	179452755	63746618	221	146702											
TTN	7273	broad.mit.edu	37	chr2	179565924	179565924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaggagcaaccacaggaGggatttctgaagaaaataaa	12	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179565924	T	T	179565924	3	4	183	1	0	0	0	0	1	0	0	0	16861	1000	35	2	73932	2	TTN	2	179565924	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	113169	179565924	63633449	222	146703											
TTN	7273	broad.mit.edu	37	chr2	179567349	179567349	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagactgatgctcactcaCcacgatgttctgtatgcgct	10	12	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179567349	A	A	179567349	3	1	183	1	0	0	0	0	1	0	0	0	16861	507	18	3	74288	3	TTN	2	179567349	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1425	179567349	63632024	223	146704											
TTN	7273	broad.mit.edu	37	chr2	179593548	179593548	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgagttacattggtaactCcactagaaataatgtctgct	8	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179593548	A	A	179593548	1	1	183	0	1	0	0	0	0	0	0	0	16861	870	30	3		3	TTN	2	179593548	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	26199	179593548	63605825	224	146705											
TTN	7273	broad.mit.edu	37	chr2	179602664	179602664	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcttatcccatataggctCtgcagtacctacctaccatg	5	13	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179602664	A	A	179602664	1	1	183	0	1	0	0	0	0	0	0	0	16861	928	32	3		3	TTN	2	179602664	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	9116	179602664	63596709	225	146706											
TTN	7273	broad.mit.edu	37	chr2	179669445	179669445	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcactctggagctgctttgCagatagcagagacacacgtt	11	10	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179669445	G	G	179669445	1	3	183	0	1	0	0	0	0	0	0	0	16861	725	25	4		4	TTN	2	179669445	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	66781	179669445	63529928	226	146707											
ITGA4	3676	broad.mit.edu	37	chr2	182322938	182322938	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaggctcctagtgggtgcGcccactgccaactggctcgc	12	14	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182322938	A	A	182322938	2	1	183	1	0	0	0	0	0	0	0	1	7948	1074	38	4		4	ITGA4	2	182322938	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	2653493	182322938	60876435	227	146708											
PPP1R1C	151242	broad.mit.edu	37	chr2	182827132	182827132	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctggccggccgggcgCcgtagttggacacctggaca	16	13	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182827132	T	T	182827132	1	4	183	0	1	0	0	0	0	0	0	0	12470	754	26	4		4	PPP1R1C	2	182827132	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	504194	182827132	60372241	228	146709											
PPP1R1C	151242	broad.mit.edu	37	chr2	182852498	182852498	+	Intron	SNP	A	C	C													tgagggtgagacagctttgcAagctgcagagtaacctggag							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182852498	C	C	182852498	1	2	183	0	1	0	0	0	0	0	0	0	12470	145	5	5		5	PPP1R1C	2	182852498	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	25366	182852498	60346875	229	146710	627	2									
PPP1R1C	151242	broad.mit.edu	37	chr2	182852500	182852500	+	Intron	SNP	G	T	T													agggtgagacagctttgcaaGctgcagagtaacctggagca							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182852500	T	T	182852500	1	4	183	0	1	0	0	0	0	0	0	0	12470	986	34	3		3	PPP1R1C	2	182852500	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2	182852500	60346873	230	146711	627	2									
ZNF804A	91752	broad.mit.edu	37	chr2	185803686	185803686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctttcccatctttacCccatgcactctttccttcac	3	17	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803686	A	A	185803686	3	1	183	1	0	0	0	0	1	0	0	0	18299	623	22	2	3577	2	ZNF804A	2	185803686	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2951186	185803686	57395687	231	146712											
COL3A1	1281	broad.mit.edu	37	chr2	189859297	189859297	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaagaatggtgccaaaggaGagcccggaccacgtggtgaa	15	8	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189859297	T	T	189859297	4	4	183	1	0	0	0	0	0	1	0	0	3720	943	33	3	1398	3	COL3A1	2	189859297	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4055611	189859297	53340076	232	146713											
COL5A2	1290	broad.mit.edu	37	chr2	189929366	189929366	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaacctacaggaccccGttctccttgagcaccctgta	8	14	1	3	rs145258293		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189929366	T	T	189929366	2	4	183	1	0	0	0	0	0	0	0	1	3729	1144	40	3		3	COL5A2	2	189929366	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	70069	189929366	53270007	233	146714											
SF3B1	23451	broad.mit.edu	37	chr2	198265001	198265001	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaagtcttcatgacaacaGcagttcgagaaatcaagtca	8	9	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198265001	A	A	198265001	3	1	183	1	0	0	0	0	1	0	0	0	14262	971	34	4	1066	4	SF3B1	2	198265001	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8335635	198265001	44934372	234	146715											
SATB2	23314	broad.mit.edu	37	chr2	200298195	200298195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtcatattcaagagagCcgtccaactgctccacgaca	8	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200298195	A	A	200298195	3	1	183	1	0	0	0	0	1	0	0	0	13966	739	26	3	2025	3	SATB2	2	200298195	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2033194	200298195	42901178	235	146716											
ALS2CR11	151254	broad.mit.edu	37	chr2	202483915	202483915	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctactgcgcaggcgcggcCctcccgcagcctttctcaca	10	19	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202483915	A	A	202483915	1	1	183	0	1	0	0	0	0	0	0	0	552	638	22	2		2	ALS2CR11	2	202483915	5'Flank	SNP	C	TCGA-64-1676-01A-01W-0928-08	2185720	202483915	40715458	236	146717											
ABI2	10152	broad.mit.edu	37	chr2	204260252	204260252	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggagctcaaggaaattttAttttgaagtggtacgctttt	10	4	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204260252	T	T	204260252	1	4	183	0	1	0	0	0	0	0	0	0	89	464	16	5		5	ABI2	2	204260252	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1776337	204260252	38939121	237	146718											
DYTN	391475	broad.mit.edu	37	chr2	207528121	207528121	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggtggctgcaaccttgccTggggaaacaaaactttattt	11	9	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207528121	A	A	207528121	5	1	183	1	0	0	0	0	0	0	1	0	4901	1594	55	5	605	5	DYTN	2	207528121	Splice_Site	SNP	T	TCGA-64-1676-01A-01W-0928-08	3267869	207528121	35671252	238	146719											
ACADL	33	broad.mit.edu	37	chr2	211085421	211085421	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaaacttccttacacttttCcggaaaatgtcatgctctgg	6	10	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211085421	G	G	211085421	2	3	183	1	0	0	0	0	0	0	0	1	112	842	30	4		4	ACADL	2	211085421	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	3557300	211085421	32113952	239	146720											
CPS1	1373	broad.mit.edu	37	chr2	211467186	211467186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcatgttctccaaaagcGtattccaaaagatgacactt	6	9	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211467186	T	T	211467186	1	4	183	0	1	0	0	0	0	0	0	0	3855	1160	40	3		3	CPS1	2	211467186	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	381765	211467186	31732187	240	146721											
XRCC5	7520	broad.mit.edu	37	chr2	216974249	216974249	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagggtggttcggaagcagGaatcgtgggatcgcggtcaa	18	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216974249	T	T	216974249	1	4	183	0	1	0	0	0	0	0	0	0	17583	1189	41	3		3	XRCC5	2	216974249	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	5507063	216974249	26225124	241	146722											
ZNF142	7701	broad.mit.edu	37	chr2	219510761	219510761	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggattacaggtgtgagCcattgcacccggccttagga	14	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219510761	A	A	219510761	1	1	183	0	1	0	0	0	0	0	0	0	17857	754	26	3		3	ZNF142	2	219510761	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2536512	219510761	23688612	242	146723											
TTLL4	9654	broad.mit.edu	37	chr2	219614940	219614941	+	Intron	DNP	GG	AT	AT													tatagtttctgggaaggaatGggttctgggtgctcccttct							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	219614941	AT	AT	219614940	1	1	183	0	1	0	0	0	0	0	0	0	16855	1363	47	4		4	TTLL4	2	219614940	Intron	DNP	GG	TCGA-64-1676-01A-01W-0928-08	104179	219614940	23584433	243	146724											
CYP27A1	1593	broad.mit.edu	37	chr2	219676937	219676937	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgtgctgttcctctgcgtCcctgcagggaaggacaccac	11	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219676937	T	T	219676937	1	4	183	0	1	0	0	0	0	0	0	0	4191	870	30	4		4	CYP27A1	2	219676937	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	61997	219676937	23522436	244	146725											
ZFAND2B	130617	broad.mit.edu	37	chr2	220073185	220073185	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcctggacagcccctccaGtgattgctttgcagaatggc	11	13	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220073185	A	A	220073185	3	1	183	1	0	0	0	0	1	0	0	0	17754	1029	36	4	587	4	ZFAND2B	2	220073185	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	396248	220073185	23126188	245	146726											
EPHA4	2043	broad.mit.edu	37	chr2	222298795	222298795	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaccccgtgcccactccatCatacagtaatgcagaacttc	5	15	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222298795	T	T	222298795	1	4	183	0	1	0	0	0	0	0	0	0	5211	841	29	4		4	EPHA4	2	222298795	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2225610	222298795	20900578	246	146727											
PAX3	5077	broad.mit.edu	37	chr2	223158469	223158469	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaactccggagaccagGgcctttcctgagggcataaa	13	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223158469	C	C	223158469	1	2	183	0	1	0	0	0	0	0	0	0	11574	1219	43	4		4	PAX3	2	223158469	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	859674	223158469	20040904	247	146728											
WDR69	164781	broad.mit.edu	37	chr2	228771916	228771916	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccatgatgatgaaatactAgacagctgctttgattacac	9	8	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228771916	T	T	228771916	2	4	183	1	0	0	0	0	0	0	0	1	17446	407	15	5		5	WDR69	2	228771916	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	5613447	228771916	14427457	248	146729											
SPHKAP	80309	broad.mit.edu	37	chr2	228886442	228886442	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcaccgttcctagattcatCcacctcgctttcctcctcca	3	19	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228886442	A	A	228886442	3	1	183	1	0	0	0	0	1	0	0	0	15166	855	30	3	4448	3	SPHKAP	2	228886442	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	114526	228886442	14312931	249	146730											
SP100	6672	broad.mit.edu	37	chr2	231326265	231326265	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaggggctggcacctgAtgcagtgagtcttcagcttg	16	8	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231326265	C	C	231326265	1	2	183	0	1	0	0	0	0	0	0	0	15074	348	12	5		5	SP100	2	231326265	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2439823	231326265	11873108	250	146731											
GPR55	9290	broad.mit.edu	37	chr2	231775240	231775240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccggtccacaccaggacCcagatggtgcagcagatccc	10	16	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231775240	A	A	231775240	3	1	183	1	0	0	0	0	1	0	0	0	6764	624	22	2	525	2	GPR55	2	231775240	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	448975	231775240	11424133	251	146732											
C2orf57	165100	broad.mit.edu	37	chr2	232457748	232457748	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagccccaaggtcaggtccCactcacagcagatgtcttgg	11	13	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232457748	G	G	232457748	3	3	183	1	0	0	0	0	1	0	0	0	2200	594	21	4	88	4	C2orf57	2	232457748	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	682508	232457748	10741625	252	146733											
CHRNG	1146	broad.mit.edu	37	chr2	233406159	233406159	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtatctactggctgccGcctgccatcttccgttccgc	10	16	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233406159	A	A	233406159	2	1	183	1	0	0	0	0	0	0	0	1	3427	1074	38	4		4	CHRNG	2	233406159	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	948411	233406159	9793214	253	146734											
HJURP	55355	broad.mit.edu	37	chr2	234750371	234750372	+	Missense_Mutation	DNP	CC	AA	AA													aagctttttccaattttaaaCctgtcttacggcaagaaaca							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	234750372	AA	AA	234750371	3	1	183	1	0	0	0	0	1	0	0	0	7256	507	18	3	1199	3	HJURP	2	234750371	Missense_Mutation	DNP	CC	TCGA-64-1676-01A-01W-0928-08	1344212	234750371	8449002	254	146735											
COL6A3	1293	broad.mit.edu	37	chr2	238256573	238256573	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagaagatctcactgagggtCcgtggggtaagacatccagg	14	9	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238256573	A	A	238256573	1	1	183	0	1	0	0	0	0	0	0	0	3733	870	30	3		3	COL6A3	2	238256573	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3506202	238256573	4942800	255	146736											
MLPH	79083	broad.mit.edu	37	chr2	238434453	238434453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctgctgcactcggtagGtgcccttggccagggtcttc	13	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238434453	T	T	238434453	1	4	183	0	1	0	0	0	0	0	0	0	9726	1276	44	3		3	MLPH	2	238434453	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	177880	238434453	4764920	256	146737											
PER2	8864	broad.mit.edu	37	chr2	239164502	239164502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaggccagggcagggcCcgccaggcagtccagggatt	15	14	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239164502	A	A	239164502	3	1	183	1	0	0	0	0	1	0	0	0	11824	623	22	2	1675	2	PER2	2	239164502	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	730049	239164502	4034871	257	146738											
PER2	8864	broad.mit.edu	37	chr2	239165693	239165693	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggtgcgtacctactccCgtgcggctgttcaccctgga	12	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239165693	A	A	239165693	2	1	183	1	0	0	0	0	0	0	0	1	11824	639	23	1		1	PER2	2	239165693	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1191	239165693	4033680	258	146739											
FARP2	9855	broad.mit.edu	37	chr2	242402803	242402803	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctgcgactctgatgacGctgctcttctccaacatcga	8	14	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242402803	T	T	242402803	2	4	183	1	0	0	0	0	0	0	0	1	5734	1074	38	3		3	FARP2	2	242402803	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3237110	242402803	796570	259	146740											
CHL1	10752	broad.mit.edu	37	chr3	382518	382518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaattgaccctcttgaaGtggaggagggagatccaatt	11	6	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	382518	T	T	382518	3	4	183	1	0	0	0	0	1	0	0	0	3380	1029	36	3	441	3	CHL1	3	382518	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08		382518	197639912	260	146741											
ITPR1	3708	broad.mit.edu	37	chr3	4718485	4718485	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcattgagatactccaGgtatccactagctggagctg	10	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4718485	T	T	4718485	3	4	183	1	0	0	0	0	1	0	0	0	7990	1014	35	2	3053	2	ITPR1	3	4718485	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4335967	4718485	193303945	261	146742											
ATP2B2	491	broad.mit.edu	37	chr3	10428302	10428302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtgcatacacacatggcCatacacctagggtcatcctg	8	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10428302	A	A	10428302	1	1	183	0	1	0	0	0	0	0	0	0	1144	609	21	2		2	ATP2B2	3	10428302	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5709817	10428302	187594128	262	146743											
SLC6A1	6529	broad.mit.edu	37	chr3	11061859	11061859	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccactcatgccagcccctggGagcccagcaggatgcgtcct	11	17	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11061859	C	C	11061859	1	2	183	0	1	0	0	0	0	0	0	0	14787	1189	41	4		4	SLC6A1	3	11061859	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	633557	11061859	186960571	263	146744											
TBC1D5	9779	broad.mit.edu	37	chr3	17208408	17208408	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaacgcagggaaccttttaGaatgtctttgatctattttc	7	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17208408	T	T	17208408	3	4	183	1	0	0	0	0	1	0	0	0	15745	933	33	3	450	3	TBC1D5	3	17208408	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6146549	17208408	180814022	264	146745											
TRAK1	22906	broad.mit.edu	37	chr3	42166916	42166916	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcttgtctttagatgtGtgcaacagcaccgatcttcc	9	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42166916	T	T	42166916	2	4	183	1	0	0	0	0	0	0	0	1	16573	1364	48	3		3	TRAK1	3	42166916	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	24958508	42166916	155855514	265	146746											
CCDC13	152206	broad.mit.edu	37	chr3	42799619	42799619	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcaaacttgcatttacctCttctcaaagctatttttcga	3	10	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42799619	A	A	42799619	3	1	183	1	0	0	0	0	1	0	0	0	2791	912	32	3	1988	3	CCDC13	3	42799619	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	632703	42799619	155222811	266	146747											
DHX30	22907	broad.mit.edu	37	chr3	47882439	47882439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgctagctgatcgctttGgctcccctgccgacagctgg	13	13	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47882439	T	T	47882439	3	4	183	1	0	0	0	0	1	0	0	0	4544	1348	47	2	468	2	DHX30	3	47882439	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	5082820	47882439	150139991	267	146748											
PLXNB1	5364	broad.mit.edu	37	chr3	48447094	48447094	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagtctcctgggaggccttGggtcagcctcccagtcgggg	15	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48447094	C	C	48447094	1	2	183	0	1	0	0	0	0	0	0	0	12218	1363	47	4		4	PLXNB1	3	48447094	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	564655	48447094	149575336	268	146749											
PFKFB4	5210	broad.mit.edu	37	chr3	48573120	48573120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcataagcaaactcagacCcacaggtcttgggctgccct	8	14	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48573120	A	A	48573120	1	1	183	0	1	0	0	0	0	0	0	0	11858	638	22	2		2	PFKFB4	3	48573120	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	126026	48573120	149449310	269	146750											
DOCK3	1795	broad.mit.edu	37	chr3	51350248	51350249	+	Intron	DNP	GG	TT	TT													ctgaaccttctcccactaacGgttggctcctgtgttactat							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51350249	TT	TT	51350248	1	4	183	0	1	0	0	0	0	0	0	0	4728	1131	39	1		1	DOCK3	3	51350248	Intron	DNP	GG	TCGA-64-1676-01A-01W-0928-08	2777128	51350248	146672182	270	146751											
ITIH1	3697	broad.mit.edu	37	chr3	52812530	52812530	+	Intron	DEL	C	-	-													gtgactttgccgtgtgcgtgCctgcccaactcccatgcctt							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52812530	-	-	52812530	6	5	183	0	1	1	0	1	0	0	0	0	7973	754	26	0		0	ITIH1	3	52812530	Intron	DEL	C	TCGA-64-1676-01A-01W-0928-08	1462282	52812530	145209900	271	146752											
FAM3D	131177	broad.mit.edu	37	chr3	58619932	58619932	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctcctcctcctcagcCcctgccgggctctgactcct	7	22	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58619932	A	A	58619932	1	1	183	0	1	0	0	0	0	0	0	0	5610	638	22	2		2	FAM3D	3	58619932	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	5807402	58619932	139402498	272	146753											
GBE1	2632	broad.mit.edu	37	chr3	81586172	81586172	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagttaaatgaaactgccGcctggcataatggtaactct	9	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81586172	A	A	81586172	3	1	183	1	0	0	0	0	1	0	0	0	6332	1086	38	4	431	4	GBE1	3	81586172	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	22966240	81586172	116436258	273	146754											
CADM2	253559	broad.mit.edu	37	chr3	86062183	86062183	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgattatgtgccaaacatgAgacctctatgatctgtagaa	8	8	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86062183	T	T	86062183	1	4	183	0	1	0	0	0	0	0	0	0	2593	319	11	5		5	CADM2	3	86062183	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	4476011	86062183	111960247	274	146755											
EPHA3	2042	broad.mit.edu	37	chr3	89480412	89480412	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccgagacctcgctgctcGgaacatcttgatcaacagta	8	13	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89480412	T	T	89480412	3	4	183	1	0	0	0	0	1	0	0	0	5210	1116	39	1	2325	1	EPHA3	3	89480412	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3418229	89480412	108542018	275	146756											
EPHA6	285220	broad.mit.edu	37	chr3	97185196	97185196	+	Intron	DEL	C	-	-													ggatatataaagtcctgcatCgccctgccccatatcagcat							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97185196	-	-	97185196	6	5	183	0	1	1	0	1	0	0	0	0	5213	899	31	0		0	EPHA6	3	97185196	Intron	DEL	C	TCGA-64-1676-01A-01W-0928-08	7704784	97185196	100837234	276	146757											
OR5H1	26341	broad.mit.edu	37	chr3	97851886	97851886	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacggaatgttttctcttGgcaacgatggcatatgatcg	10	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97851886	T	T	97851886	3	4	183	1	0	0	0	0	1	0	0	0	11253	1339	47	2	347	2	OR5H1	3	97851886	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	666690	97851886	100170544	277	146758											
ST3GAL6	10402	broad.mit.edu	37	chr3	98503797	98503797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtccaacagcataccctGtaaaaagtgtgtggtggttg	11	8	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98503797	T	T	98503797	3	4	183	1	0	0	0	0	1	0	0	0	15337	1377	48	3	362	3	ST3GAL6	3	98503797	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	651911	98503797	99518633	278	146759											
TBC1D23	55773	broad.mit.edu	37	chr3	100002603	100002603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcatcttcaactgccaCgcagcgatttatacaactgc	8	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100002603	A	A	100002603	3	1	183	1	0	0	0	0	1	0	0	0	15732	536	19	3	438	3	TBC1D23	3	100002603	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1498806	100002603	98019827	279	146760											
GPR128	84873	broad.mit.edu	37	chr3	100378723	100378723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgggaagctgccaggcaaGgctcatccagcacttaacgc	11	12	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100378723	T	T	100378723	1	4	183	0	1	0	0	0	0	0	0	0	6706	1015	35	2		2	GPR128	3	100378723	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	376120	100378723	97643707	280	146761											
ALCAM	214	broad.mit.edu	37	chr3	105271017	105271017	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagaacacgatgaggcagacGagataagtggtaggtactat	13	6	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105271017	C	C	105271017	3	2	183	1	0	0	0	0	1	0	0	0	487	1059	37	4	1587	4	ALCAM	3	105271017	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4892294	105271017	92751413	281	146762											
PLCXD2	257068	broad.mit.edu	37	chr3	111432892	111432892	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcacggggctccttccaTgtctcccaagcgatcctcac	8	18	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111432892	G	G	111432892	3	3	183	1	0	0	0	0	1	0	0	0	12137	1461	51	5	793	5	PLCXD2	3	111432892	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	6161875	111432892	86589538	282	146763											
ABHD10	55347	broad.mit.edu	37	chr3	111710643	111710643	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataagaaatgaaagatcctgAtactttaggtttttcccttt	6	6	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111710643	T	T	111710643	1	4	183	0	1	0	0	0	0	0	0	0	74	348	12	5		5	ABHD10	3	111710643	3'UTR	SNP	A	TCGA-64-1676-01A-01W-0928-08	277751	111710643	86311787	283	146764											
TAGLN3	29114	broad.mit.edu	37	chr3	111730735	111730735	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagcctcttccttgccccCtggaccacaaggcgatttta	7	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111730735	A	A	111730735	1	1	183	0	1	0	0	0	0	0	0	0	15659	696	24	2		2	TAGLN3	3	111730735	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	20092	111730735	86291695	284	146765											
SLC9A10	285335	broad.mit.edu	37	chr3	111870801	111870801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcagtggcggcactgtGtgctccatcctgggattcaa	13	12	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111870801	T	T	111870801	3	4	183	1	0	0	0	0	1	0	0	0	14824	1377	48	3	114	3	SLC9A10	3	111870801	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	140066	111870801	86151629	285	146766											
ADPRH	141	broad.mit.edu	37	chr3	119300944	119300944	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttctgattcttcttgctcCtcatcctatttcctttgtct	3	12	5	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119300944	G	G	119300944	1	3	183	0	1	0	0	0	0	0	0	0	331	696	24	4		4	ADPRH	3	119300944	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	7430143	119300944	78721486	286	146767											
FSTL1	11167	broad.mit.edu	37	chr3	120129820	120129820	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggctggcagatggacttaCggatttcttctctgcaagac	12	9	2	2	rs149509930		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120129820	T	T	120129820	3	4	183	1	0	0	0	0	1	0	0	0	6137	536	19	4	644	4	FSTL1	3	120129820	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	828876	120129820	77892610	287	146768											
STXBP5L	9515	broad.mit.edu	37	chr3	120977787	120977787	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatgctgcctgcaatgccTggtgttgtatatttctgtag	11	8	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120977787	A	A	120977787	1	1	183	0	1	0	0	0	0	0	0	0	15475	1595	55	5		5	STXBP5L	3	120977787	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	847967	120977787	77044643	288	146769											
POLQ	10721	broad.mit.edu	37	chr3	121215823	121215823	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtaagagatccttcacgtCtactaggcgatacagtgtgt	11	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121215823	A	A	121215823	1	1	183	0	1	0	0	0	0	0	0	0	12303	928	32	3		3	POLQ	3	121215823	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	238036	121215823	76806607	289	146770											
HCLS1	3059	broad.mit.edu	37	chr3	121363563	121363563	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctcacagcatccactgtCctgtctttcaacaaagaagc	6	14	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121363563	A	A	121363563	1	1	183	0	1	0	0	0	0	0	0	0	7061	870	30	3		3	HCLS1	3	121363563	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	147740	121363563	76658867	290	146771											
SEMA5B	54437	broad.mit.edu	37	chr3	122631817	122631817	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccagctcgcagtcccgGgagcaggacgaccacgggcc	14	16	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122631817	T	T	122631817	2	4	183	1	0	0	0	0	0	0	0	1	14151	1219	43	2		2	SEMA5B	3	122631817	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1268254	122631817	75390613	291	146772											
ADCY5	111	broad.mit.edu	37	chr3	123021897	123021897	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccagcccctgtgcacccAgtacctcggggaagttgcag	11	15	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123021897	T	T	123021897	1	4	183	0	1	0	0	0	0	0	0	0	297	203	7	5		5	ADCY5	3	123021897	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	390080	123021897	75000533	292	146773											
MUC13	56667	broad.mit.edu	37	chr3	124646418	124646418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctccaataaagcggtgcCagtgggaggccctgatgatt	14	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124646418	A	A	124646418	3	1	183	1	0	0	0	0	1	0	0	0	10065	594	21	2	1103	2	MUC13	3	124646418	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1624521	124646418	73376012	293	146774											
HEG1	57493	broad.mit.edu	37	chr3	124692485	124692485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctttaacccttaactaaCtgtaatgcttttactacaac	2	11	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124692485	A	A	124692485	1	1	183	0	1	0	0	0	0	0	0	0	7111	580	20	3		3	HEG1	3	124692485	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	46067	124692485	73329945	294	146775											
ZXDC	79364	broad.mit.edu	37	chr3	126180702	126180702	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgcactcacagtctgCacgtcatccacactgaagct	7	16	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126180702	A	A	126180702	2	1	183	1	0	0	0	0	0	0	0	1	18381	697	25	3		3	ZXDC	3	126180702	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1488217	126180702	71841728	295	146776											
UROC1	131669	broad.mit.edu	37	chr3	126224636	126224636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggtgacaaagaccttccCagccaagtcctcgatgccca	9	14	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126224636	T	T	126224636	3	4	183	1	0	0	0	0	1	0	0	0	17154	594	21	4	1545	4	UROC1	3	126224636	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	43934	126224636	71797794	296	146777											
IFT122	55764	broad.mit.edu	37	chr3	129231391	129231391	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacagagaactcaccctcCcgctgctgtttggctataga	9	12	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129231391	T	T	129231391	1	4	183	0	1	0	0	0	0	0	0	0	7625	638	22	4		4	IFT122	3	129231391	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3006755	129231391	68791039	297	146778											
COL6A6	131873	broad.mit.edu	37	chr3	130313158	130313158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagggactcctggtgacCgtggagcaaagggcctgcga	17	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130313158	A	A	130313158	3	1	183	1	0	0	0	0	1	0	0	0	3735	652	23	1	4570	1	COL6A6	3	130313158	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1081767	130313158	67709272	298	146779											
PIK3R4	30849	broad.mit.edu	37	chr3	130425910	130425910	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcctgtggcatgtttggtGggtccagtgacccaaacatg	15	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130425910	A	A	130425910	3	1	183	1	0	0	0	0	1	0	0	0	12016	1348	47	4	1513	4	PIK3R4	3	130425910	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	112752	130425910	67596520	299	146780											
CEP63	80254	broad.mit.edu	37	chr3	134278166	134278166	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtctttgacttcctactcTctatgtaaaactcattcttt	4	10	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134278166	C	C	134278166	2	2	183	1	0	0	0	0	0	0	0	1	3287	1538	54	5		5	CEP63	3	134278166	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	3852256	134278166	63744264	300	146781											
ACPL2	92370	broad.mit.edu	37	chr3	140979120	140979120	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtagagccgggccccgcagGtcgtgggagggtaggggctt	20	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140979120	C	C	140979120	1	2	183	0	1	0	0	0	0	0	0	0	166	1276	44	4		4	ACPL2	3	140979120	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	6700954	140979120	57043310	301	146782											
TFDP2	7029	broad.mit.edu	37	chr3	141762548	141762548	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgttcttcaccgtgcttgcGtgcttccttggtcttagacc	10	13	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141762548	C	C	141762548	1	2	183	0	1	0	0	0	0	0	0	0	15921	1160	40	4		4	TFDP2	3	141762548	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	783428	141762548	56259882	302	146783											
XRN1	54464	broad.mit.edu	37	chr3	142090048	142090048	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaaacactgaattgaacTatgaggtaataaatatcata	6	4	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142090048	A	A	142090048	1	1	183	0	1	0	0	0	0	0	0	0	17586	1537	53	5		5	XRN1	3	142090048	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	327500	142090048	55932382	303	146784											
PCOLCE2	26577	broad.mit.edu	37	chr3	142537297	142537297	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacttggcccataataatGtaatttagacctaaagaaag	6	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142537297	T	T	142537297	4	4	183	1	0	0	0	0	0	1	0	0	11689	1372	48	3	123	3	PCOLCE2	3	142537297	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	447249	142537297	55485133	304	146785											
SR140	23350	broad.mit.edu	37	chr3	142747463	142747463	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcttttgtagaggaacctAgtaaaaagggagcacttaag	11	5	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142747463	T	T	142747463	3	4	183	1	0	0	0	0	1	0	0	0	15249	420	15	5	1647	5	SR140	3	142747463	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	210166	142747463	55274967	305	146786											
SLC9A9	285195	broad.mit.edu	37	chr3	143236652	143236652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaaggattcagcttgatGgcatctgtgaataagtcaat	10	6	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143236652	T	T	143236652	1	4	183	0	1	0	0	0	0	0	0	0	14835	1363	47	2		2	SLC9A9	3	143236652	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	489189	143236652	54785778	306	146787											
SLC9A9	285195	broad.mit.edu	37	chr3	143346104	143346104	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagttattgtgaacttgcaCaagtagtcattgatagtgca	10	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143346104	G	G	143346104	1	3	183	0	1	0	0	0	0	0	0	0	14835	493	17	4		4	SLC9A9	3	143346104	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	109452	143346104	54676326	307	146788											
SLC9A9	285195	broad.mit.edu	37	chr3	143346441	143346441	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggcagacctctcactaaCaaaatgaaattggaagagcc	8	10	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143346441	T	T	143346441	1	4	183	0	1	0	0	0	0	0	0	0	14835	493	17	4		4	SLC9A9	3	143346441	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	337	143346441	54675989	308	146789											
HPS3	84343	broad.mit.edu	37	chr3	148863150	148863150	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgcatgcaggttctcttaCatctgatggaaaaaatttgt	8	6	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148863150	G	G	148863150	3	3	183	1	0	0	0	0	1	0	0	0	7407	478	17	4	998	4	HPS3	3	148863150	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5516709	148863150	49159280	309	146790											
TM4SF18	116441	broad.mit.edu	37	chr3	149051183	149051183	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accccattttgccctgcttaGaacctgcgggagatttcaag	9	12	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149051183	T	T	149051183	1	4	183	0	1	0	0	0	0	0	0	0	16090	957	33	3		3	TM4SF18	3	149051183	5'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	188033	149051183	48971247	310	146791											
MED12L	116931	broad.mit.edu	37	chr3	151134112	151134112	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttccagatgcagcagcccCagcagccccagccccagcag	9	19	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151134112	T	T	151134112	4	4	183	1	0	0	0	0	0	1	0	0	9522	595	21	4	6367	4	MED12L	3	151134112	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2082929	151134112	46888318	311	146792											
KCNAB1	7881	broad.mit.edu	37	chr3	156232098	156232098	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctagaggagtaaaaatcgcAtaactttgaaaagtagacaa	9	5	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156232098	T	T	156232098	1	4	183	0	1	0	0	0	0	0	0	0	8079	232	8	5		5	KCNAB1	3	156232098	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	5097986	156232098	41790332	312	146793											
ZBBX	79740	broad.mit.edu	37	chr3	167031857	167031857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatgatgttgatggatgCcattttcatatggaaagcta	9	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167031857	A	A	167031857	3	1	183	1	0	0	0	0	1	0	0	0	17643	739	26	3	1104	3	ZBBX	3	167031857	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	10799759	167031857	30990573	313	146794											
WDR49	151790	broad.mit.edu	37	chr3	167322244	167322244	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgatagcgtctaaagatGcattgtaagtaactgataaa	8	4	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167322244	T	T	167322244	1	4	183	0	1	0	0	0	0	0	0	0	17429	1334	46	3		3	WDR49	3	167322244	5'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	290387	167322244	30700186	314	146795											
GHSR	2693	broad.mit.edu	37	chr3	172163026	172163026	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagctttctctgggagaaGggttcgaatcccagaagtct	13	8	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172163026	T	T	172163026	2	4	183	1	0	0	0	0	0	0	0	1	6439	987	35	2		2	GHSR	3	172163026	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	4840782	172163026	25859404	315	146796											
NLGN1	22871	broad.mit.edu	37	chr3	173525608	173525608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtcatcacagtcaactatcGacttggagtactcggtaaga	9	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173525608	T	T	173525608	3	4	183	1	0	0	0	0	1	0	0	0	10556	1058	37	3	638	3	NLGN1	3	173525608	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1362582	173525608	24496822	316	146797											
CCDC39	339829	broad.mit.edu	37	chr3	180351861	180351861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatgcagagaagacaaCcactctcttctcctgactcc	5	16	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180351861	A	A	180351861	1	1	183	0	1	0	0	0	0	0	0	0	2838	522	18	3		3	CCDC39	3	180351861	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	6826253	180351861	17670569	317	146798											
KLHL6	89857	broad.mit.edu	37	chr3	183225911	183225911	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagacctctgggcactgcCtgatgagaggatctgcttcc	13	11	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183225911	A	A	183225911	3	1	183	1	0	0	0	0	1	0	0	0	8464	681	24	2	1040	2	KLHL6	3	183225911	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2874050	183225911	14796519	318	146799											
CHRD	8646	broad.mit.edu	37	chr3	184104632	184104632	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcctctgctcctctctgcaGagacgaacggtgatctgtga	11	12	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184104632	T	T	184104632	5	4	183	1	0	0	0	0	0	0	1	0	3403	956	33	3	2262	3	CHRD	3	184104632	Splice_Site	SNP	G	TCGA-64-1676-01A-01W-0928-08	878721	184104632	13917798	319	146800											
MAGEF1	64110	broad.mit.edu	37	chr3	184429233	184429233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaaaaccaaagacatacCgcagatgctctgcggccctt	8	14	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184429233	A	A	184429233	3	1	183	1	0	0	0	0	1	0	0	0	9279	652	23	1	550	1	MAGEF1	3	184429233	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	324601	184429233	13593197	320	146801											
DGKG	1608	broad.mit.edu	37	chr3	185986600	185986600	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaacccaccgtcatccggCaccacacgcagtgccgcgcg	10	20	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185986600	G	G	185986600	3	3	183	1	0	0	0	0	1	0	0	0	4509	710	25	4	1325	4	DGKG	3	185986600	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1557367	185986600	12035830	321	146802											
DGKG	1608	broad.mit.edu	37	chr3	186038373	186038373	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcctttcaggagacttctGggagcactcaagtgtataca	10	9	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186038373	C	C	186038373	1	2	183	0	1	0	0	0	0	0	0	0	4509	1363	47	4		4	DGKG	3	186038373	5'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	51773	186038373	11984057	322	146803											
RTP2	344892	broad.mit.edu	37	chr3	187416442	187416442	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgtaggtggtcacctcCtcctccagcagcttctcgct	11	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187416442	T	T	187416442	2	4	183	1	0	0	0	0	0	0	0	1	13845	680	24	4		4	RTP2	3	187416442	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1378069	187416442	10605988	323	146804											
TPRG1	285386	broad.mit.edu	37	chr3	188925302	188925302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccaagacagatttcaagGcagtcaagtgtgaccgaatc	10	9	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188925302	T	T	188925302	3	4	183	1	0	0	0	0	1	0	0	0	16542	1194	42	3	131	3	TPRG1	3	188925302	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1508860	188925302	9097128	324	146805											
FGFRL1	53834	broad.mit.edu	37	chr4	1018108	1018108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttcccacagagcggacccGttccaagcccgtgctcacag	10	17	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1018108	T	T	1018108	3	4	183	1	0	0	0	0	1	0	0	0	5926	1145	40	3	746	3	FGFRL1	4	1018108	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08		1018108	190136168	325	146806											
CPZ	8532	broad.mit.edu	37	chr4	8608445	8608445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgaccccacccagtcggGggttggccatgttttcaggg	14	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8608445	T	T	8608445	1	4	183	0	1	0	0	0	0	0	0	0	3871	1247	43	2		2	CPZ	4	8608445	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	7590337	8608445	182545831	326	146807											
DRD5	1816	broad.mit.edu	37	chr4	9784629	9784629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctttctgcagtggacacCccgaaggccctccggccggc	11	18	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9784629	A	A	9784629	3	1	183	1	0	0	0	0	1	0	0	0	4800	623	22	2	978	2	DRD5	4	9784629	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1176184	9784629	181369647	327	146808											
SLC2A9	56606	broad.mit.edu	37	chr4	10027563	10027563	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaatcactttcttcatcttCtcctcggtcctttttactga	4	12	5	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10027563	A	A	10027563	4	1	183	1	0	0	0	0	0	1	0	0	14666	922	32	3	1709	3	SLC2A9	4	10027563	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	242934	10027563	181126713	328	146809											
PROM1	8842	broad.mit.edu	37	chr4	16008396	16008396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggactaaggctggagcCgatgagttattcttggcttc	13	8	1	1	rs77182932	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16008396	A	A	16008396	1	1	183	0	1	0	0	0	0	0	0	0	12661	667	23	1		1	PROM1	4	16008396	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5980833	16008396	175145880	329	146810											
GPR125	166647	broad.mit.edu	37	chr4	22426109	22426109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacccaacaggcactttaCttgtttctcatgaaaacatc	5	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22426109	A	A	22426109	1	1	183	0	1	0	0	0	0	0	0	0	6704	580	20	3		3	GPR125	4	22426109	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	6417713	22426109	168728167	330	146811											
PPARGC1A	10891	broad.mit.edu	37	chr4	23803479	23803479	+	Frame_Shift_Del	DEL	G	-	-													aaaagcatcacaggtataacGgtaggtaatgaaaccatagc							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23803479	-	-	23803479	7	5	183	1	0	1	0	1	0	0	0	0	12396	1116	39	0	237	0	PPARGC1A	4	23803479	Frame_Shift_Del	DEL	G	TCGA-64-1676-01A-01W-0928-08	1377370	23803479	167350797	331	146812											
PCDH7	5099	broad.mit.edu	37	chr4	31144040	31144040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaatttcatatagatcaGgggagcctgttgaggagtgt	12	6	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31144040	T	T	31144040	1	4	183	0	1	0	0	0	0	0	0	0	11610	1015	35	2		2	PCDH7	4	31144040	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	7340561	31144040	160010236	332	146813											
WDR19	57728	broad.mit.edu	37	chr4	39184082	39184082	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgattggtcgctgctcgCgcggtctcctgggtgacggg	17	12	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39184082	T	T	39184082	1	4	183	0	1	0	0	0	0	0	0	0	17406	783	27	4		4	WDR19	4	39184082	5'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	8040042	39184082	151970194	333	146814											
RFC1	5981	broad.mit.edu	37	chr4	39314400	39314400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttggactgtccactatcaCgacccatgacaagataattt	6	11	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39314400	A	A	39314400	3	1	183	1	0	0	0	0	1	0	0	0	13352	536	19	3	2148	3	RFC1	4	39314400	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	130318	39314400	151839876	334	146815											
ATP8A1	10396	broad.mit.edu	37	chr4	42571135	42571135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaacaataaaatgcaaacCttttatagggatcaatgagg	7	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42571135	A	A	42571135	1	1	183	0	1	0	0	0	0	0	0	0	1196	696	24	2		2	ATP8A1	4	42571135	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3256735	42571135	148583141	335	146816											
KCTD8	386617	broad.mit.edu	37	chr4	44176686	44176686	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatactgtcccacatcCactgttcacaacaaggaaga	6	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44176686	A	A	44176686	1	1	183	0	1	0	0	0	0	0	0	0	8185	609	21	2		2	KCTD8	4	44176686	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	1605551	44176686	146977590	336	146817											
KCTD8	386617	broad.mit.edu	37	chr4	44449622	44449622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgctccagatcttgtcgtCgcggtactggttgacgaagg	14	10	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44449622	A	A	44449622	3	1	183	1	0	0	0	0	1	0	0	0	8185	884	31	3	510	3	KCTD8	4	44449622	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	272936	44449622	146704654	337	146818											
GABRA2	2555	broad.mit.edu	37	chr4	46252655	46252655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaattaacagagtgtggGttgagtctgctacttaacat	9	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46252655	T	T	46252655	1	4	183	0	1	0	0	0	0	0	0	0	6221	1276	44	3		3	GABRA2	4	46252655	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1803033	46252655	144901621	338	146819											
CORIN	10699	broad.mit.edu	37	chr4	47685848	47685848	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacagtgaaacagattctcGctgcagtctgcaaataaaag	9	8	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47685848	A	A	47685848	2	1	183	1	0	0	0	0	0	0	0	1	3784	1078	38	4		4	CORIN	4	47685848	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1433193	47685848	143468428	339	146820											
CNGA1	1259	broad.mit.edu	37	chr4	47939673	47939673	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggaagaactcaaacatacGagagaaccgtaacaacctgt	8	10	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47939673	C	C	47939673	3	2	183	1	0	0	0	0	1	0	0	0	3628	1058	37	4	1238	4	CNGA1	4	47939673	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	253825	47939673	143214603	340	146821											
FRYL	285527	broad.mit.edu	37	chr4	48584628	48584628	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatggacatcagtcacttcAcgaacaataaaataaacaaa	6	8	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48584628	T	T	48584628	2	4	183	1	0	0	0	0	0	0	0	1	6124	146	6	5		5	FRYL	4	48584628	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	644955	48584628	142569648	341	146822											
SPATA18	132671	broad.mit.edu	37	chr4	52938449	52938449	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcagcaatctgccaagctTtgaattgtaaagggattgtt	9	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52938449	A	A	52938449	1	1	183	0	1	0	0	0	0	0	0	0	15119	1856	64	5		5	SPATA18	4	52938449	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	4353821	52938449	138215827	342	146823											
CEP135	9662	broad.mit.edu	37	chr4	56883961	56883961	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagagaactttgcattaaaCttgattcaggcaaagatatt	7	5	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56883961	T	T	56883961	3	4	183	1	0	0	0	0	1	0	0	0	3277	565	20	4	3032	4	CEP135	4	56883961	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3945512	56883961	134270315	343	146824											
EPHA5	2044	broad.mit.edu	37	chr4	66242818	66242818	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagcccaagataaggaagaGatcccactccctcaaatata	7	11	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66242818	A	A	66242818	1	1	183	0	1	0	0	0	0	0	0	0	5212	957	33	4		4	EPHA5	4	66242818	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	9358857	66242818	124911458	344	146825											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68725197	68725197	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaataaaagccatagtaaAagaaagaatgccagacttta	7	5	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68725197	T	T	68725197	1	4	183	0	1	0	0	0	0	0	0	0	16364	29	1	5		5	TMPRSS11D	4	68725197	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2482379	68725197	122429079	345	146826											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68725499	68725499	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcccggtctcttatctggGacatggctctagccatagaa	9	11	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68725499	T	T	68725499	1	4	183	0	1	0	0	0	0	0	0	0	16364	1189	41	3		3	TMPRSS11D	4	68725499	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	302	68725499	122428777	346	146827											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69100244	69100244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtttttcaacatctgatGtaatttagccttgattttag	7	5	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69100244	T	T	69100244	3	4	183	1	0	0	0	0	1	0	0	0	16363	1377	48	3	868	3	TMPRSS11B	4	69100244	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	374745	69100244	122054032	347	146828											
UGT2B4	7363	broad.mit.edu	37	chr4	70346378	70346378	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttccccttctttcctgTtctaacaaacttccagacac	2	15	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70346378	C	C	70346378	3	2	183	1	0	0	0	0	1	0	0	0	17087	1725	60	5	29	5	UGT2B4	4	70346378	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	1246134	70346378	120807898	348	146829											
C4orf7	260436	broad.mit.edu	37	chr4	71098640	71098640	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattaggtaatagattgtcaTgcatatgtatatatttattt	6	2	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71098640	C	C	71098640	1	2	183	0	1	0	0	0	0	0	0	0	2302	1479	51	5		5	C4orf7	4	71098640	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	752262	71098640	120055636	349	146830											
ENAM	10117	broad.mit.edu	37	chr4	71495425	71495425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaagaagaacttacacaGtcattgtactttgtggcaat	9	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71495425	T	T	71495425	1	4	183	0	1	0	0	0	0	0	0	0	5154	1044	36	3		3	ENAM	4	71495425	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	396785	71495425	119658851	350	146831											
RUFY3	22902	broad.mit.edu	37	chr4	71629436	71629436	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacagcattcttattaacTatcccttgaagagcaagact	7	9	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71629436	C	C	71629436	1	2	183	0	1	0	0	0	0	0	0	0	13851	1537	53	5		5	RUFY3	4	71629436	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	134011	71629436	119524840	351	146832											
ALB	213	broad.mit.edu	37	chr4	74283925	74283925	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgcttttcagctctggaaGtcgatgaaacatacgttccc	8	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74283925	C	C	74283925	3	2	183	1	0	0	0	0	1	0	0	0	486	1029	36	4	1595	4	ALB	4	74283925	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2654489	74283925	116870351	352	146833											
RASSF6	166824	broad.mit.edu	37	chr4	74441943	74441943	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgttttagcaatagaagCttgtactgctaaactgttgt	8	5	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74441943	A	A	74441943	1	1	183	0	1	0	0	0	0	0	0	0	13198	812	28	3		3	RASSF6	4	74441943	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	158018	74441943	116712333	353	146834											
CXCL6	6372	broad.mit.edu	37	chr4	74702735	74702735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacttgtttacgcgttaCgctgagagtaaaccccaaaa	8	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74702735	T	T	74702735	3	4	183	1	0	0	0	0	1	0	0	0	4121	536	19	4	170	4	CXCL6	4	74702735	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	260792	74702735	116451541	354	146835											
USO1	8615	broad.mit.edu	37	chr4	76714849	76714849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatctttgtagcaacagGtaattcagtttcagctggcc	9	10	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76714849	T	T	76714849	3	4	183	1	0	0	0	0	1	0	0	0	17165	1261	44	3	1138	3	USO1	4	76714849	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2012114	76714849	114439427	355	146836											
PPEF2	5470	broad.mit.edu	37	chr4	76809248	76809248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaattgtggacctgaaggGgttaaatttggcttatcatc	11	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76809248	T	T	76809248	1	4	183	0	1	0	0	0	0	0	0	0	12404	1247	43	2		2	PPEF2	4	76809248	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	94399	76809248	114345028	356	146837											
NAA11	84779	broad.mit.edu	37	chr4	80246771	80246771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggtccatcagcttctgGgccaggccgaggcgccggtg	16	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80246771	T	T	80246771	2	4	183	1	0	0	0	0	0	0	0	1	10211	1219	43	2		2	NAA11	4	80246771	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3437523	80246771	110907505	357	146838											
PRKG2	5593	broad.mit.edu	37	chr4	82090798	82090798	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccactgtcttcactgtctCccaatgtattattcttacct	3	14	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82090798	A	A	82090798	1	1	183	0	1	0	0	0	0	0	0	0	12629	870	30	3		3	PRKG2	4	82090798	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1844027	82090798	109063478	358	146839											
TMEM150C	441027	broad.mit.edu	37	chr4	83417293	83417293	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatccactaatattcagccaCgggtttaaaaccttcggttt	6	10	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83417293	T	T	83417293	2	4	183	1	0	0	0	0	0	0	0	1	16192	523	19	4		4	TMEM150C	4	83417293	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1326495	83417293	107736983	359	146840											
WDFY3	23001	broad.mit.edu	37	chr4	85658524	85658524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgagaagctgacgccctagTaaacaaacaaacaaacaaac	6	10	0	2	rs150542176	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85658524	A	A	85658524	1	1	183	0	1	0	0	0	0	0	0	0	17397	1653	57	5		5	WDFY3	4	85658524	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	2241231	85658524	105495752	360	146841											
PTPN13	5783	broad.mit.edu	37	chr4	87701591	87701591	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccccagctcaaagaggtcTgctgtttcagctccaaagtc	9	13	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87701591	G	G	87701591	2	3	183	1	0	0	0	0	0	0	0	1	12888	1567	55	5		5	PTPN13	4	87701591	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	2043067	87701591	103452685	361	146842											
SLC10A6	345274	broad.mit.edu	37	chr4	87752868	87752868	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtactcaacaagctcacttgTcccagccactgctcacttct	5	16	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87752868	C	C	87752868	1	2	183	0	1	0	0	0	0	0	0	0	14491	1682	58	5		5	SLC10A6	4	87752868	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	51277	87752868	103401408	362	146843											
FAM13A	10144	broad.mit.edu	37	chr4	89772323	89772323	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaatagatccctcactcctGgattttgggatctagaagaa	9	8	2	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89772323	A	A	89772323	2	1	183	1	0	0	0	0	0	0	0	1	5498	1335	47	4		4	FAM13A	4	89772323	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	2019455	89772323	101381953	363	146844											
TIGD2	166815	broad.mit.edu	37	chr4	90034726	90034726	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgaccaaagtacttctGggtgtaggtcaagcagagag	12	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90034726	T	T	90034726	3	4	183	1	0	0	0	0	1	0	0	0	16019	1348	47	2	603	2	TIGD2	4	90034726	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	262403	90034726	101119550	364	146845											
MMRN1	22915	broad.mit.edu	37	chr4	90857151	90857151	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgatatggaaactattttgAcatttattcctcagttccac	5	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90857151	T	T	90857151	3	4	183	1	0	0	0	0	1	0	0	0	9764	275	10	5	2342	5	MMRN1	4	90857151	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	822425	90857151	100297125	365	146846											
GRID2	2895	broad.mit.edu	37	chr4	94377138	94377138	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaacaaggtaaggagcaaaAgtacattctagtatttaaaa	7	5	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94377138	T	T	94377138	1	4	183	0	1	0	0	0	0	0	0	0	6838	87	3	5		5	GRID2	4	94377138	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	3519987	94377138	96777138	366	146847											
ADH1B	125	broad.mit.edu	37	chr4	100235229	100235229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacacagcacaggtagagcCtggggtgacctgtgttttca	12	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100235229	A	A	100235229	3	1	183	1	0	0	0	0	1	0	0	0	308	681	24	2	566	2	ADH1B	4	100235229	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5858091	100235229	90919047	367	146848											
MANBA	4126	broad.mit.edu	37	chr4	103553402	103553402	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacagctgaggtctccaggtCaaaaacaaatatgtcacctt	8	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103553402	T	T	103553402	3	4	183	1	0	0	0	0	1	0	0	0	9311	826	29	4	191	4	MANBA	4	103553402	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3318173	103553402	87600874	368	146849											
CENPE	1062	broad.mit.edu	37	chr4	104070211	104070211	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttccaacattgctcccctCtttccaagtggctcagattt	5	14	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104070211	A	A	104070211	1	1	183	0	1	0	0	0	0	0	0	0	3260	928	32	3		3	CENPE	4	104070211	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	516809	104070211	87084065	369	146850											
AGXT2L1	64850	broad.mit.edu	37	chr4	109669074	109669074	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtagttttaatagagaCggggtctcaccatgttgccc	10	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109669074	G	G	109669074	1	3	183	0	1	0	0	0	0	0	0	0	406	551	19	4		4	AGXT2L1	4	109669074	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5598863	109669074	81485202	370	146851											
UGT8	7368	broad.mit.edu	37	chr4	115586823	115586823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaagactaattgtctgGtgtacattttaggttttctg	8	4	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115586823	T	T	115586823	1	4	183	0	1	0	0	0	0	0	0	0	17091	1276	44	3		3	UGT8	4	115586823	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	5917749	115586823	75567453	371	146852											
NDST3	9348	broad.mit.edu	37	chr4	119064823	119064823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggagaacttttcttcaCtgtcgtcctcaaccctgtaa	8	11	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119064823	A	A	119064823	3	1	183	1	0	0	0	0	1	0	0	0	10352	565	20	3	1541	3	NDST3	4	119064823	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3478000	119064823	72089453	372	146853											
PCDH10	57575	broad.mit.edu	37	chr4	134076220	134076220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaatgctaacttttataGtttttgtttttaaaaataaa	3	3	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134076220	T	T	134076220	1	4	183	0	1	0	0	0	0	0	0	0	11601	1044	36	3		3	PCDH10	4	134076220	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	15011397	134076220	57078056	373	146854											
GYPA	2993	broad.mit.edu	37	chr4	145020716	145020716	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagcatgcaggccacatccTcattcctgtgataaaaagac	8	12	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145020716	A	A	145020716	1	1	183	0	1	0	0	0	0	0	0	0	6973	1566	54	5		5	GYPA	4	145020716	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	10944496	145020716	46133560	374	146855											
MMAA	166785	broad.mit.edu	37	chr4	146576326	146576326	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtatttctgcccgaagtggaGaggggatctctgaaatgtgg	15	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146576326	T	T	146576326	4	4	183	1	0	0	0	0	0	1	0	0	9732	943	33	3	1019	3	MMAA	4	146576326	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1555610	146576326	44577950	375	146856											
POU4F2	5458	broad.mit.edu	37	chr4	147561705	147561705	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggcatggctcgaggaGgccgagaagtcccaccgcga	15	13	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147561705	T	T	147561705	3	4	183	1	0	0	0	0	1	0	0	0	12375	991	35	2	981	2	POU4F2	4	147561705	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	985379	147561705	43592571	376	146857											
NR3C2	4306	broad.mit.edu	37	chr4	149356498	149356498	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggaagggatgctggcCtctgggtaatagctcccatc	14	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149356498	A	A	149356498	3	1	183	1	0	0	0	0	1	0	0	0	10726	680	24	2	1471	2	NR3C2	4	149356498	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1794793	149356498	41797778	377	146858											
TIGD4	201798	broad.mit.edu	37	chr4	153692094	153692094	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgatcttttcctcaatggaTaggcttttctttttcttcac	5	10	5	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153692094	C	C	153692094	2	2	183	1	0	0	0	0	0	0	0	1	16021	1393	49	5		5	TIGD4	4	153692094	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	4335596	153692094	37462182	378	146859											
FGB	2244	broad.mit.edu	37	chr4	155487128	155487128	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcccctgatgctggaggcTgtcttcacgctgacccagac	11	14	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155487128	A	A	155487128	3	1	183	1	0	0	0	0	1	0	0	0	5888	1580	55	5	289	5	FGB	4	155487128	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	1795034	155487128	35667148	379	146860											
GLRB	2743	broad.mit.edu	37	chr4	158058029	158058029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaacgttgcaagatgcaaCtggagagctgtacgtaaatg	11	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158058029	A	A	158058029	3	1	183	1	0	0	0	0	1	0	0	0	6522	564	20	3	619	3	GLRB	4	158058029	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2570901	158058029	33096247	380	146861											
MARCH1	55016	broad.mit.edu	37	chr4	164466875	164466875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttcctcctttcacttgtGgtcatctgtagtttctccca	5	12	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164466875	T	T	164466875	2	4	183	1	0	0	0	0	0	0	0	1	9390	1335	47	2		2	MARCH1	4	164466875	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	6408846	164466875	26687401	381	146862											
MARCH1	55016	broad.mit.edu	37	chr4	165111394	165111394	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagctaacaagaaggaactgGaagaaattgttcagccactt	9	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165111394	T	T	165111394	1	4	183	0	1	0	0	0	0	0	0	0	9390	1189	41	3		3	MARCH1	4	165111394	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	644519	165111394	26042882	382	146863											
C4orf39	152756	broad.mit.edu	37	chr4	165878351	165878351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccatggcagtgtctctttGctcagacatccagggacgac	11	13	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165878351	T	T	165878351	3	4	183	1	0	0	0	0	1	0	0	0	2291	1310	46	3	179	3	C4orf39	4	165878351	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	766957	165878351	25275925	383	146864											
TLL1	7092	broad.mit.edu	37	chr4	166935713	166935713	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagctgtatagatgtccagGtattgcactacacaaacaca	7	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166935713	T	T	166935713	5	4	183	1	0	0	0	0	0	0	1	0	16068	1275	44	3	1073	3	TLL1	4	166935713	Splice_Site	SNP	G	TCGA-64-1676-01A-01W-0928-08	1057362	166935713	24218563	384	146865											
DDX60L	91351	broad.mit.edu	37	chr4	169348525	169348525	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgggaaaattccattatgAcatttcactagtgagattat	8	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169348525	G	G	169348525	1	3	183	0	1	0	0	0	0	0	0	0	4412	290	10	5		5	DDX60L	4	169348525	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2412812	169348525	21805751	385	146866											
GPM6A	2823	broad.mit.edu	37	chr4	176556078	176556078	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtatgcattgagccgcTctttggagcgagtagagtgg	15	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176556078	A	A	176556078	3	1	183	1	0	0	0	0	1	0	0	0	6680	1551	54	5	25	5	GPM6A	4	176556078	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	7207553	176556078	14598198	386	146867											
WDR17	116966	broad.mit.edu	37	chr4	177069477	177069477	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtgtatgatcacggtgcaGatgtatatggtagagtgtct	13	5	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177069477	T	T	177069477	3	4	183	1	0	0	0	0	1	0	0	0	17404	942	33	3	2010	3	WDR17	4	177069477	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	513399	177069477	14084799	387	146868											
ASB5	140458	broad.mit.edu	37	chr4	177142261	177142261	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttagagaaataaataactGcttgtgtgtatggacagaat	9	3	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177142261	A	A	177142261	1	1	183	0	1	0	0	0	0	0	0	0	1030	1334	46	4		4	ASB5	4	177142261	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	72784	177142261	14012015	388	146869											
VEGFC	7424	broad.mit.edu	37	chr4	177608608	177608608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccccgctctgcagacaCactgacaggtctcttcatcc	8	16	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608608	A	A	177608608	3	1	183	1	0	0	0	0	1	0	0	0	17279	478	17	3	392	3	VEGFC	4	177608608	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	466347	177608608	13545668	389	146870											
FAM149A	25854	broad.mit.edu	37	chr4	187077232	187077232	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacttcctcctgtttccccGcgtgactgtgtcaaagatgc	10	13	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187077232	T	T	187077232	2	4	183	1	0	0	0	0	0	0	0	1	5501	1074	38	3		3	FAM149A	4	187077232	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	9468624	187077232	4077044	390	146871											
FAT1	2195	broad.mit.edu	37	chr4	187627867	187627868	+	Frame_Shift_Ins	INS	-	A	A													tctttcactgtccccttttcINScacaaagctggaaaacacgg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187627868	A	A	187627867	7	5	183	1	0	1	1	0	0	0	0	0	5746	864	30	0	10755	0	FAT1	4	187627867	Frame_Shift_Ins	INS	-	TCGA-64-1676-01A-01W-0928-08	550635	187627867	3526409	391	146872											
ZFP42	132625	broad.mit.edu	37	chr4	188924008	188924008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacaagacaccagaaagGcctgggtggaagagccccca	12	11	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188924008	T	T	188924008	3	4	183	1	0	0	0	0	1	0	0	0	17776	1203	42	3	49	3	ZFP42	4	188924008	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1296141	188924008	2230268	392	146873											
TRIML2	205860	broad.mit.edu	37	chr4	189020209	189020209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgagcaatgccaaggtgcCttccccacactttttctcaa	6	14	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189020209	A	A	189020209	3	1	183	1	0	0	0	0	1	0	0	0	16676	681	24	2	728	2	TRIML2	4	189020209	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	96201	189020209	2134067	393	146874											
SEMA5A	9037	broad.mit.edu	37	chr5	9063152	9063152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgaccacgacgtccaggCtgaccaagccccgttgaccg	11	16	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9063152	A	A	9063152	3	1	183	1	0	0	0	0	1	0	0	0	14150	797	28	3	883	3	SEMA5A	5	9063152	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08		9063152	171852108	394	146875											
CTNND2	1501	broad.mit.edu	37	chr5	11022998	11022998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtgcagcagacagctGtcactgtgtcatccgacatg	12	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11022998	T	T	11022998	3	4	183	1	0	0	0	0	1	0	0	0	4054	1377	48	3	819	3	CTNND2	5	11022998	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1959846	11022998	169892262	395	146876											
CTNND2	1501	broad.mit.edu	37	chr5	11111231	11111231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcttccacctggaaaggCctctttctccatggacacat	6	14	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11111231	A	A	11111231	1	1	183	0	1	0	0	0	0	0	0	0	4054	754	26	3		3	CTNND2	5	11111231	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	88233	11111231	169804029	396	146877											
DNAH5	1767	broad.mit.edu	37	chr5	13752425	13752425	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggatcacaaggttgctaTtggcagacattaccatgaag	10	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13752425	A	A	13752425	1	1	183	0	1	0	0	0	0	0	0	0	4644	1508	52	5		5	DNAH5	5	13752425	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	2641194	13752425	167162835	397	146878											
FBXL7	23194	broad.mit.edu	37	chr5	15936573	15936573	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaggatgctccaaagtgAcctgcatcagcttgacccgg	12	12	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15936573	C	C	15936573	3	2	183	1	0	0	0	0	1	0	0	0	5781	275	10	5	768	5	FBXL7	5	15936573	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	2184148	15936573	164978687	398	146879											
CDH18	1016	broad.mit.edu	37	chr5	19747207	19747207	+	Frame_Shift_Del	DEL	G	-	-													ttgagcatgaagcacatagtGggtcttctgctctctgtcta							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19747207	-	-	19747207	7	5	183	1	0	1	0	1	0	0	0	0	3133	1348	47	0	2045	0	CDH18	5	19747207	Frame_Shift_Del	DEL	G	TCGA-64-1676-01A-01W-0928-08	3810634	19747207	161168053	399	146880											
CDH9	1007	broad.mit.edu	37	chr5	26915967	26915967	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctataacaaatagactGccagccccatctcctgttag	5	13	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26915967	A	A	26915967	2	1	183	1	0	0	0	0	0	0	0	1	3147	1306	46	4		4	CDH9	5	26915967	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	7168760	26915967	153999293	400	146881											
ADAMTS12	81792	broad.mit.edu	37	chr5	33549669	33549669	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accccagcagctcccgatgtCgggaaacacatgcataggag	11	13	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33549669	T	T	33549669	1	4	183	0	1	0	0	0	0	0	0	0	257	899	31	4		4	ADAMTS12	5	33549669	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	6633702	33549669	147365591	401	146882											
ADAMTS12	81792	broad.mit.edu	37	chr5	33643548	33643548	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcgacaaaagcccttcaCggagcaccacagtgtctggc	11	13	2	1	rs138321976		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33643548	A	A	33643548	3	1	183	1	0	0	0	0	1	0	0	0	257	536	19	3	3337	3	ADAMTS12	5	33643548	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	93879	33643548	147271712	402	146883											
AGXT2	64902	broad.mit.edu	37	chr5	35035424	35035424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaccaagaaaatgacctGgagaggaaaggaagacacgt	12	7	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35035424	T	T	35035424	1	4	183	0	1	0	0	0	0	0	0	0	405	1363	47	2		2	AGXT2	5	35035424	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1391876	35035424	145879836	403	146884											
UGT3A2	167127	broad.mit.edu	37	chr5	36048935	36048935	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaagtggcagccaccaaCtatgcactgaaggcctctgc	11	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36048935	A	A	36048935	1	1	183	0	1	0	0	0	0	0	0	0	17090	580	20	3		3	UGT3A2	5	36048935	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1013511	36048935	144866325	404	146885											
SLC1A3	6507	broad.mit.edu	37	chr5	36686351	36686351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaaactgagaaacccatcGacagtgaaaccaagatgtag	9	8	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36686351	T	T	36686351	3	4	183	1	0	0	0	0	1	0	0	0	14546	1058	37	3	1660	3	SLC1A3	5	36686351	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	637416	36686351	144228909	405	146886											
WDR70	55100	broad.mit.edu	37	chr5	37703180	37703180	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggtgtatgaaatagacatCacagatgcggtacgtatatt	11	5	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37703180	G	G	37703180	3	3	183	1	0	0	0	0	1	0	0	0	17448	816	29	4	1457	4	WDR70	5	37703180	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1016829	37703180	143212080	406	146887											
EGFLAM	133584	broad.mit.edu	37	chr5	38352578	38352578	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccaacatggtgaaaccccGtctctactaaaaatacaaaa	5	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38352578	A	A	38352578	1	1	183	0	1	0	0	0	0	0	0	0	5006	1160	40	4		4	EGFLAM	5	38352578	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	649398	38352578	142562682	407	146888											
C9	735	broad.mit.edu	37	chr5	39341479	39341479	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcaaatgcattttaaccCtggaggtgaggtatcagaaa	9	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39341479	A	A	39341479	1	1	183	0	1	0	0	0	0	0	0	0	2469	696	24	2		2	C9	5	39341479	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	988901	39341479	141573781	408	146889											
DAB2	1601	broad.mit.edu	37	chr5	39375244	39375244	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtcataagaaaaaaatcGcaatgaagacttccaaaatt	5	7	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39375244	A	A	39375244	1	1	183	0	1	0	0	0	0	0	0	0	4251	1102	38	4		4	DAB2	5	39375244	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	33765	39375244	141540016	409	146890											
HEATR7B2	133558	broad.mit.edu	37	chr5	40999785	40999785	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtgtactcacctgtgaGtttgacagctgcactcctga	11	10	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40999785	C	C	40999785	3	2	183	1	0	0	0	0	1	0	0	0	7102	1029	36	4	190	4	HEATR7B2	5	40999785	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1624541	40999785	139915475	410	146891											
NNT	23530	broad.mit.edu	37	chr5	43666912	43666912	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggtacctttgggagcctgAgctggaactgaagctggagc	15	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43666912	G	G	43666912	1	3	183	0	1	0	0	0	0	0	0	0	10605	319	11	5		5	NNT	5	43666912	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2667127	43666912	137248348	411	146892											
ITGA2	3673	broad.mit.edu	37	chr5	52285378	52285378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggtaagcggggatttcGctctgcatcggctgcaggag	15	9	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52285378	T	T	52285378	1	4	183	0	1	0	0	0	0	0	0	0	7945	1102	38	3		3	ITGA2	5	52285378	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	8618466	52285378	128629882	412	146893											
ESM1	11082	broad.mit.edu	37	chr5	54281167	54281167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagcaagtttctccccgcCctgcagcgcacactcggcag	11	16	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54281167	A	A	54281167	3	1	183	1	0	0	0	0	1	0	0	0	5294	623	22	2	387	2	ESM1	5	54281167	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1995789	54281167	126634093	413	146894											
ANKRD55	79722	broad.mit.edu	37	chr5	55406997	55406997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcacggagacctcttgGtgaccaggccggacactgag	16	11	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55406997	T	T	55406997	3	4	183	1	0	0	0	0	1	0	0	0	681	1252	44	3	278	3	ANKRD55	5	55406997	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1125830	55406997	125508263	414	146895											
CENPK	64105	broad.mit.edu	37	chr5	64824289	64824289	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaacttacctttttctttTtaacacttctatcaggcaga	3	9	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64824289	C	C	64824289	3	2	183	1	0	0	0	0	1	0	0	0	3265	1841	64	5	234	5	CENPK	5	64824289	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	9417292	64824289	116090971	415	146896											
ANKRD32	84250	broad.mit.edu	37	chr5	94014519	94014519	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcttaatgttaggtcttcAaacatgaactagcttactta	5	7	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94014519	T	T	94014519	4	4	183	1	0	0	0	0	0	1	0	0	660	131	5	5	1888	5	ANKRD32	5	94014519	Nonsense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	29190230	94014519	86900741	416	146897											
CCDC112	153733	broad.mit.edu	37	chr5	114611088	114611088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcataatcatcccaggcaCcttgtcgccctcctgtttgc	7	15	2	0	rs141845700		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114611088	A	A	114611088	3	1	183	1	0	0	0	0	1	0	0	0	2775	507	18	3	866	3	CCDC112	5	114611088	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	20596569	114611088	66304172	417	146898											
AQPEP	206338	broad.mit.edu	37	chr5	115346543	115346543	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtaaacttggtaaccagGgatcttgtttctgaggtgaa	12	5	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115346543	T	T	115346543	3	4	183	1	0	0	0	0	1	0	0	0	836	1223	43	2	2253	2	AQPEP	5	115346543	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	735455	115346543	65568717	418	146899											
DMXL1	1657	broad.mit.edu	37	chr5	118468880	118468880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccgaaaagaaggaattaGgctgtgataaaatggtacca	10	6	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118468880	T	T	118468880	3	4	183	1	0	0	0	0	1	0	0	0	4634	1000	35	2	1411	2	DMXL1	5	118468880	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3122337	118468880	62446380	419	146900											
MEGF10	84466	broad.mit.edu	37	chr5	126774191	126774191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaactgccataatggagCtttctgcagcgcctacgatg	11	11	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126774191	A	A	126774191	3	1	183	1	0	0	0	0	1	0	0	0	9553	797	28	3	2227	3	MEGF10	5	126774191	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	8305311	126774191	54141069	420	146901											
MEGF10	84466	broad.mit.edu	37	chr5	126776495	126776495	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgtcaaaacggagctgaCtgcgaccacatttctgggca	10	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126776495	T	T	126776495	2	4	183	1	0	0	0	0	0	0	0	1	9553	564	20	4		4	MEGF10	5	126776495	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	2304	126776495	54138765	421	146902											
FBN2	2201	broad.mit.edu	37	chr5	127597672	127597672	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttccagtggtagagcagaCtcttcagaaacacgaaacca	8	10	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127597672	T	T	127597672	1	4	183	0	1	0	0	0	0	0	0	0	5760	580	20	4		4	FBN2	5	127597672	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	821177	127597672	53317588	422	146903											
FBN2	2201	broad.mit.edu	37	chr5	127727745	127727745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcatcctgcttataaccCatgttgcattcacatcggta	6	11	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127727745	A	A	127727745	3	1	183	1	0	0	0	0	1	0	0	0	5760	594	21	2	7389	2	FBN2	5	127727745	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	130073	127727745	53187515	423	146904											
FBN2	2201	broad.mit.edu	37	chr5	127730885	127730885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccaggctcacagcagcaCtgcattttcgtcattctccc	8	16	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127730885	A	A	127730885	3	1	183	1	0	0	0	0	1	0	0	0	5760	564	20	3	7805	3	FBN2	5	127730885	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3140	127730885	53184375	424	146905											
SLC27A6	28965	broad.mit.edu	37	chr5	128324424	128324424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatagttcagcagctatcCtgggaatttctggatgtgtt	10	7	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128324424	A	A	128324424	3	1	183	1	0	0	0	0	1	0	0	0	14644	680	24	2	827	2	SLC27A6	5	128324424	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	593539	128324424	52590836	425	146906											
ADAMTS19	171019	broad.mit.edu	37	chr5	128956400	128956400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattaaaggacagaatcttgGtgacgtttcatggtctcgat	11	6	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128956400	T	T	128956400	3	4	183	1	0	0	0	0	1	0	0	0	264	1261	44	3	1584	3	ADAMTS19	5	128956400	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	631976	128956400	51958860	426	146907											
PKD2L2	27039	broad.mit.edu	37	chr5	137235237	137235237	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttctaataccaactcccCttggcactggggatttcttg	7	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137235237	T	T	137235237	3	4	183	1	0	0	0	0	1	0	0	0	12063	681	24	4	575	4	PKD2L2	5	137235237	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	8278837	137235237	43680023	427	146908											
CDC25C	995	broad.mit.edu	37	chr5	137625169	137625169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcttatgtaaccagttacCatctccagaaatctgcttac	5	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137625169	A	A	137625169	1	1	183	0	1	0	0	0	0	0	0	0	3094	609	21	2		2	CDC25C	5	137625169	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	389932	137625169	43290091	428	146909											
DIAPH1	1729	broad.mit.edu	37	chr5	140905600	140905600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaacccgtcttcactcCtcacctgcattcatgtctat	3	17	6	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140905600	A	A	140905600	1	1	183	0	1	0	0	0	0	0	0	0	4558	696	24	2		2	DIAPH1	5	140905600	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3280431	140905600	40009660	429	146910											
PCDH1	5097	broad.mit.edu	37	chr5	141234086	141234086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccactggcatctacaCcccacctcaggacaggagta	8	17	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141234086	A	A	141234086	1	1	183	0	1	0	0	0	0	0	0	0	11600	522	18	3		3	PCDH1	5	141234086	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	328486	141234086	39681174	430	146911											
NDST1	3340	broad.mit.edu	37	chr5	149918784	149918784	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcctctcccccaccccctCctcaggttctcccacggcag	6	23	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149918784	T	T	149918784	1	4	183	0	1	0	0	0	0	0	0	0	10350	870	30	4		4	NDST1	5	149918784	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8684698	149918784	30996476	431	146912											
GLRA1	2741	broad.mit.edu	37	chr5	151228660	151228660	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttcctttttatttcTtttcttttctttctttcttt	0	8	6	0	rs140062205	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151228660	A	A	151228660	1	1	183	0	1	0	0	0	0	0	0	0	6518	1624	56	5		5	GLRA1	5	151228660	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1309876	151228660	29686600	432	146913											
SGCD	6444	broad.mit.edu	37	chr5	156184831	156184831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcaacaaaaggagccaagCaggttttatttctgaaacaa	7	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156184831	A	A	156184831	1	1	183	0	1	0	0	0	0	0	0	0	14314	725	25	3		3	SGCD	5	156184831	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4956171	156184831	24730429	433	146914											
GABRA6	2559	broad.mit.edu	37	chr5	161118900	161118900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcatttgattttgccatAggattcccagtactaatatt	5	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161118900	T	T	161118900	1	4	183	0	1	0	0	0	0	0	0	0	6225	435	15	5		5	GABRA6	5	161118900	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	4934069	161118900	19796360	434	146915											
GABRG2	2566	broad.mit.edu	37	chr5	161495054	161495054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagctcagtctactcgactCctgtattttcacagaaaatg	7	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161495054	A	A	161495054	3	1	183	1	0	0	0	0	1	0	0	0	6232	855	30	3	51	3	GABRG2	5	161495054	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	376154	161495054	19420206	435	146916											
ODZ2	57451	broad.mit.edu	37	chr5	167645208	167645208	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctagagaacaatgtcatcCttcgaatcaccgagaaccac	6	12	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167645208	T	T	167645208	3	4	183	1	0	0	0	0	1	0	0	0	10930	681	24	4	4375	4	ODZ2	5	167645208	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	6150154	167645208	13270052	436	146917											
SLIT3	6586	broad.mit.edu	37	chr5	168096927	168096927	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgttgtcacacaagtcCcctccatagccctcggcaca	6	16	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168096927	A	A	168096927	2	1	183	1	0	0	0	0	0	0	0	1	14855	610	22	2		2	SLIT3	5	168096927	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	451719	168096927	12818333	437	146918											
DOCK2	1794	broad.mit.edu	37	chr5	169188664	169188664	+	Intron	DEL	G	-	-													cccttgctggggtggggtaaGgggccaataaaccccacatc							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169188664	-	-	169188664	6	5	183	0	1	1	0	1	0	0	0	0	4727	1015	35	0		0	DOCK2	5	169188664	Intron	DEL	G	TCGA-64-1676-01A-01W-0928-08	1091737	169188664	11726596	438	146919											
DOCK2	1794	broad.mit.edu	37	chr5	169507295	169507295	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctaccatcccaggtatgccCcctgctgccaccagcatgag	8	18	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169507295	G	G	169507295	1	3	183	0	1	0	0	0	0	0	0	0	4727	638	22	4		4	DOCK2	5	169507295	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	318631	169507295	11407965	439	146920											
LCP2	3937	broad.mit.edu	37	chr5	169689812	169689812	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcagagttctacagaacgtCccatgtaccctcatgtagat	9	11	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169689812	A	A	169689812	1	1	183	0	1	0	0	0	0	0	0	0	8764	870	30	3		3	LCP2	5	169689812	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	182517	169689812	11225448	440	146921											
ZNF354A	6940	broad.mit.edu	37	chr5	178139390	178139390	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgttttcccacactcgtTacatttatagggtctttctc	6	10	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178139390	A	A	178139390	3	1	183	1	0	0	0	0	1	0	0	0	17990	1754	61	5	332	5	ZNF354A	5	178139390	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	8449578	178139390	2775870	441	146922											
KIAA0319	9856	broad.mit.edu	37	chr6	24598486	24598486	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actagagcctgctgagccccCttaagctggaggtggacccc	12	14	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24598486	A	A	24598486	1	1	183	0	1	0	0	0	0	0	0	0	8238	696	24	2		2	KIAA0319	6	24598486	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08		24598486	146516581	442	146923											
SCGN	10590	broad.mit.edu	37	chr6	25669751	25669751	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttcagatttggcgcaaaTatgacgctgacagcagtggc	11	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25669751	A	A	25669751	3	1	183	1	0	0	0	0	1	0	0	0	14016	1406	49	5	367	5	SCGN	6	25669751	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	1071265	25669751	145445316	443	146924											
SCGN	10590	broad.mit.edu	37	chr6	25691247	25691247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttgctttttggcttaagaAactgatatttgggcaattgg	10	6	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25691247	T	T	25691247	1	4	183	0	1	0	0	0	0	0	0	0	14016	29	1	5		5	SCGN	6	25691247	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	21496	25691247	145423820	444	146925											
GABBR1	2550	broad.mit.edu	37	chr6	29523647	29523647	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccctgccaacaccccatgCccagggtggtcaccctccaa	7	20	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29523647	A	A	29523647	1	1	183	0	1	0	0	0	0	0	0	0	6215	754	26	3		3	GABBR1	6	29523647	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	3832400	29523647	141591420	445	146926											
GNL1	2794	broad.mit.edu	37	chr6	30520233	30520233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaccacgcacaagctgcCacttccttacccacacagcc	6	20	0	0	rs112012560		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30520233	A	A	30520233	1	1	183	0	1	0	0	0	0	0	0	0	6599	609	21	2		2	GNL1	6	30520233	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	996586	30520233	140594834	446	146927											
MDC1	9656	broad.mit.edu	37	chr6	30680116	30680116	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcttctttatatgtataaTggctgaccctggcgggactt	10	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30680116	C	C	30680116	3	2	183	1	0	0	0	0	1	0	0	0	9496	1464	51	5	4710	5	MDC1	6	30680116	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	159883	30680116	140434951	447	146928											
PPT2	9374	broad.mit.edu	37	chr6	32122510	32122510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgtggtgcatgggctcttcGacagctcgtacagcttccgc	12	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32122510	T	T	32122510	3	4	183	1	0	0	0	0	1	0	0	0	12513	1058	37	3	163	3	PPT2	6	32122510	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1442394	32122510	138992557	448	146929											
GRM4	2914	broad.mit.edu	37	chr6	34029651	34029651	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggctcccggtgcccacccTgctgccacctgccctcacct	8	21	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34029651	C	C	34029651	1	2	183	0	1	0	0	0	0	0	0	0	6865	1595	55	5		5	GRM4	6	34029651	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1907141	34029651	137085416	449	146930											
DNAH8	1769	broad.mit.edu	37	chr6	38758175	38758175	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatatgttcaatcaacttttAaagaaggtatgatctataca	6	5	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38758175	G	G	38758175	2	3	183	1	0	0	0	0	0	0	0	1	4647	359	13	5		5	DNAH8	6	38758175	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	4728524	38758175	132356892	450	146931											
C6orf130	221443	broad.mit.edu	37	chr6	41036604	41036604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatggagaggtcagtgactCcattcttcagacaatgagac	11	9	3	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41036604	A	A	41036604	3	1	183	1	0	0	0	0	1	0	0	0	2352	855	30	3	134	3	C6orf130	6	41036604	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2278429	41036604	130078463	451	146932											
GUCA1B	2979	broad.mit.edu	37	chr6	42162345	42162345	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtccttcccttcagggtGccttaccccattcttgtcga	8	15	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42162345	A	A	42162345	1	1	183	0	1	0	0	0	0	0	0	0	6954	1334	46	4		4	GUCA1B	6	42162345	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1125741	42162345	128952722	452	146933											
SLC22A7	10864	broad.mit.edu	37	chr6	43269342	43269342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagcaaagtggccgccGgggaacgggtggtccgaaga	18	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43269342	T	T	43269342	3	4	183	1	0	0	0	0	1	0	0	0	14573	1116	39	1	995	1	SLC22A7	6	43269342	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1106997	43269342	127845725	453	146934											
TCTE1	202500	broad.mit.edu	37	chr6	44254167	44254167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggagccagtagttctcaCtgtctatcaggttggcggtc	13	10	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44254167	A	A	44254167	3	1	183	1	0	0	0	0	1	0	0	0	15839	565	20	3	1137	3	TCTE1	6	44254167	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	984825	44254167	126860900	454	146935											
SPATS1	221409	broad.mit.edu	37	chr6	44337843	44337843	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttgagcctcttccacaaAttcccaagtgagttctcttg	6	13	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44337843	G	G	44337843	3	3	183	1	0	0	0	0	1	0	0	0	15134	101	4	5	773	5	SPATS1	6	44337843	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	83676	44337843	126777224	455	146936											
GPR110	266977	broad.mit.edu	37	chr6	46979705	46979705	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcctcctacaggatcaagCatttaaagtgagcccttcaa	6	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46979705	T	T	46979705	1	4	183	0	1	0	0	0	0	0	0	0	6692	725	25	4		4	GPR110	6	46979705	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2641862	46979705	124135362	456	146937											
GPR111	222611	broad.mit.edu	37	chr6	47646847	47646847	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcactgacacctgccagactCttaatgccctcaacatcttt	4	15	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47646847	A	A	47646847	3	1	183	1	0	0	0	0	1	0	0	0	6693	913	32	3	254	3	GPR111	6	47646847	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	667142	47646847	123468220	457	146938											
OPN5	221391	broad.mit.edu	37	chr6	47759675	47759675	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatgactgctgtcagcctgGatcgatatttgaaaatctgc	9	10	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47759675	T	T	47759675	3	4	183	1	0	0	0	0	1	0	0	0	10977	1174	41	3	398	3	OPN5	6	47759675	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	112828	47759675	123355392	458	146939											
CRISP1	167	broad.mit.edu	37	chr6	49806202	49806202	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttcacatgggacgcctgtCttataaggttcattctttgt	9	9	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49806202	G	G	49806202	3	3	183	1	0	0	0	0	1	0	0	0	3911	912	32	4	187	4	CRISP1	6	49806202	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2046527	49806202	121308865	459	146940											
TFAP2D	83741	broad.mit.edu	37	chr6	50697068	50697068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataatgctggaaggttggcGtgtctttgaaactcaggttt	12	5	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50697068	T	T	50697068	1	4	183	0	1	0	0	0	0	0	0	0	15913	1160	40	3		3	TFAP2D	6	50697068	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	890866	50697068	120417999	460	146941											
GSTA5	221357	broad.mit.edu	37	chr6	52700875	52700875	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccccatgttcactgttccCtcatctccatgggactctgc	6	17	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52700875	T	T	52700875	1	4	183	0	1	0	0	0	0	0	0	0	6900	696	24	4		4	GSTA5	6	52700875	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2003807	52700875	118414192	461	146942											
TINAG	27283	broad.mit.edu	37	chr6	54214562	54214562	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaagaccaaaatgctacCaacaatggatgtgccatggc	8	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54214562	A	A	54214562	2	1	183	1	0	0	0	0	0	0	0	1	16044	581	21	2		2	TINAG	6	54214562	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1513687	54214562	116900505	462	146943											
GFRAL	389400	broad.mit.edu	37	chr6	55216293	55216293	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcagcagtccaaagaagctCttcacagcaagacatgtgca	9	11	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55216293	A	A	55216293	3	1	183	1	0	0	0	0	1	0	0	0	6415	913	32	3	631	3	GFRAL	6	55216293	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1001731	55216293	115898774	463	146944											
DST	667	broad.mit.edu	37	chr6	56437106	56437106	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtcaatataaatgttgctaGatcttcaaatggcattccat	6	7	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56437106	T	T	56437106	1	4	183	0	1	0	0	0	0	0	0	0	4823	957	33	3		3	DST	6	56437106	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1220813	56437106	114677961	464	146945											
DST	667	broad.mit.edu	37	chr6	56472157	56472157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagataggtgaatccctGtttgtattatcttcattctc	6	8	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56472157	A	A	56472157	1	1	183	0	1	0	0	0	0	0	0	0	4823	1392	48	4		4	DST	6	56472157	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	35051	56472157	114642910	465	146946											
EYS	346007	broad.mit.edu	37	chr6	65612314	65612314	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctgaaattgttgaccatAtcttcacagtcaccataatc	4	11	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65612314	T	T	65612314	3	4	183	1	0	0	0	0	1	0	0	0	5375	446	16	5	6666	5	EYS	6	65612314	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	9140157	65612314	105502753	466	146947											
EYS	346007	broad.mit.edu	37	chr6	66053948	66053948	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctcttttgtgccttcatGtgggaaccaacatgaagaat	8	9	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66053948	T	T	66053948	3	4	183	1	0	0	0	0	1	0	0	0	5375	1377	48	3	7950	3	EYS	6	66053948	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	441634	66053948	105061119	467	146948											
BAI3	577	broad.mit.edu	37	chr6	69703643	69703643	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattctgatgtttgctctgtTcttttgaccatcacagatta	7	8	4	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69703643	A	A	69703643	1	1	183	0	1	0	0	0	0	0	0	0	1305	1798	62	5		5	BAI3	6	69703643	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	3649695	69703643	101411424	468	146949											
BAI3	577	broad.mit.edu	37	chr6	69759227	69759227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacttagatctaattttGcccactttgaggtaagctac	6	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69759227	T	T	69759227	3	4	183	1	0	0	0	0	1	0	0	0	1305	1310	46	3	2372	3	BAI3	6	69759227	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	55584	69759227	101355840	469	146950											
CD109	135228	broad.mit.edu	37	chr6	74516860	74516860	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggtaggtcttaatgggtCaaatatgtgtgtggaaactt	13	3	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74516860	A	A	74516860	1	1	183	0	1	0	0	0	0	0	0	0	2993	841	29	3		3	CD109	6	74516860	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4757633	74516860	96598207	470	146951											
COL12A1	1303	broad.mit.edu	37	chr6	75801183	75801183	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaacacacaaaataaacgTaagattttttaaaaatacat	2	5	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75801183	A	A	75801183	1	1	183	0	1	0	0	0	0	0	0	0	3701	1653	57	5		5	COL12A1	6	75801183	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1284323	75801183	95313884	471	146952											
COL12A1	1303	broad.mit.edu	37	chr6	75828759	75828759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattcatgtatgtgcttgcCtgactgctggatgaccaaag	10	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75828759	A	A	75828759	3	1	183	1	0	0	0	0	1	0	0	0	3701	695	24	2	1921	2	COL12A1	6	75828759	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	27576	75828759	95286308	472	146953											
COL12A1	1303	broad.mit.edu	37	chr6	75893229	75893229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaagactaatctggacCctatttggtgaaatttcaaa	7	8	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75893229	A	A	75893229	3	1	183	1	0	0	0	0	1	0	0	0	3701	622	22	2	7991	2	COL12A1	6	75893229	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	64470	75893229	95221838	473	146954											
COL12A1	1303	broad.mit.edu	37	chr6	75899098	75899098	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataatcaatggcatcccCtaaagggaaaagaaacatgt	7	7	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75899098	A	A	75899098	5	1	183	1	0	0	0	0	0	0	1	0	3701	695	24	2	8773	2	COL12A1	6	75899098	Splice_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	5869	75899098	95215969	474	146955											
FILIP1	27145	broad.mit.edu	37	chr6	76023009	76023009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaacagaagatctttccaCgggtttcttcaatcccacct	6	12	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76023009	A	A	76023009	3	1	183	1	0	0	0	0	1	0	0	0	5951	536	19	3	1110	3	FILIP1	6	76023009	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	123911	76023009	95092058	475	146956											
MYO6	4646	broad.mit.edu	37	chr6	76623721	76623721	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggggtatattttaggattAaaggctcttttcttttccct	8	6	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76623721	T	T	76623721	1	4	183	0	1	0	0	0	0	0	0	0	10175	377	13	5		5	MYO6	6	76623721	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	600712	76623721	94491346	476	146957											
SNAP91	9892	broad.mit.edu	37	chr6	84375098	84375098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagagccttaaatcatcaCcatgctcttcctaaaagcct	4	13	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84375098	A	A	84375098	1	1	183	0	1	0	0	0	0	0	0	0	14947	522	18	3		3	SNAP91	6	84375098	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	7751377	84375098	86739969	477	146958											
C6orf165	154313	broad.mit.edu	37	chr6	88138333	88138333	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcattttgaatattttttttCtcttcctcagcctatcttca	3	10	4	1	rs79821877		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88138333	A	A	88138333	1	1	183	0	1	0	0	0	0	0	0	0	2364	928	32	3		3	C6orf165	6	88138333	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3763235	88138333	82976734	478	146959											
GJA10	84694	broad.mit.edu	37	chr6	90604139	90604139	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatattaccaccatgggtGctattaacctcagtgttttc	6	9	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90604139	T	T	90604139	1	4	183	0	1	0	0	0	0	0	0	0	6465	1334	46	3		3	GJA10	6	90604139	5'Flank	SNP	G	TCGA-64-1676-01A-01W-0928-08	2465806	90604139	80510928	479	146960											
ASCC3	10973	broad.mit.edu	37	chr6	101095256	101095256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttactaagattcaggagCctgtaggtcatggtaggcca	11	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101095256	A	A	101095256	3	1	183	1	0	0	0	0	1	0	0	0	1037	738	26	3	3372	3	ASCC3	6	101095256	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	10491117	101095256	70019811	480	146961											
SLC22A16	85413	broad.mit.edu	37	chr6	110757068	110757068	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttaccttacaatggttgGatacagctcagctgtataaa	7	9	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110757068	T	T	110757068	3	4	183	1	0	0	0	0	1	0	0	0	14560	1174	41	3	337	3	SLC22A16	6	110757068	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	9661812	110757068	60357999	481	146962											
GPRC6A	222545	broad.mit.edu	37	chr6	117128061	117128061	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accacaatgacattaacctgGgcttctaaaatgattttctt	5	9	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117128061	C	C	117128061	2	2	183	1	0	0	0	0	0	0	0	1	6794	1219	43	4		4	GPRC6A	6	117128061	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	6370993	117128061	53987006	482	146963											
SLC35F1	222553	broad.mit.edu	37	chr6	118596610	118596610	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctctgtttgtttgtttgGttggttcctaggggaaaata	11	6	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118596610	C	C	118596610	1	2	183	0	1	0	0	0	0	0	0	0	14702	1276	44	4		4	SLC35F1	6	118596610	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1468549	118596610	52518457	483	146964											
GJA1	2697	broad.mit.edu	37	chr6	121768935	121768935	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaactgggctaattacagTgcagaacaaaatcgaatggg	10	7	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121768935	G	G	121768935	3	3	183	1	0	0	0	0	1	0	0	0	6464	1693	59	5	944	5	GJA1	6	121768935	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	3172325	121768935	49346132	484	146965											
LAMA2	3908	broad.mit.edu	37	chr6	129470172	129470172	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgtggcgatagctgtgatCagtgctgtccaggattccat	12	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129470172	A	A	129470172	3	1	183	1	0	0	0	0	1	0	0	0	8678	827	29	3	984	3	LAMA2	6	129470172	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	7701237	129470172	41644895	485	146966											
MOXD1	26002	broad.mit.edu	37	chr6	132693794	132693794	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggaatcttaaacatttGgcaccaatatgttgtatctt	6	8	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132693794	T	T	132693794	3	4	183	1	0	0	0	0	1	0	0	0	9814	1357	47	2	1261	2	MOXD1	6	132693794	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3223622	132693794	38421273	486	146967											
VNN2	8875	broad.mit.edu	37	chr6	133072129	133072129	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtatgtacgtgcataaAtgcacgtgtgtgtgtgtgtg	14	5	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133072129	C	C	133072129	1	2	183	0	1	0	0	0	0	0	0	0	17310	116	4	5		5	VNN2	6	133072129	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	378335	133072129	38042938	487	146968											
BCLAF1	9774	broad.mit.edu	37	chr6	136590641	136590641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgctttcttgatccaCtggattccctggagcccttg	8	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136590641	A	A	136590641	3	1	183	1	0	0	0	0	1	0	0	0	1388	565	20	3	629	3	BCLAF1	6	136590641	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3518512	136590641	34524426	488	146969											
TXLNB	167838	broad.mit.edu	37	chr6	139583834	139583834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatctggccctggatgtccGtgagggtactctggaaatgg	15	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139583834	T	T	139583834	3	4	183	1	0	0	0	0	1	0	0	0	16914	1145	40	3	1314	3	TXLNB	6	139583834	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2993193	139583834	31531233	489	146970											
UTRN	7402	broad.mit.edu	37	chr6	144854358	144854358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtttaaaccaacgctgGgatgcaattgttgcagaagt	12	7	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144854358	T	T	144854358	3	4	183	1	0	0	0	0	1	0	0	0	17230	1241	43	2	6361	2	UTRN	6	144854358	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	5270524	144854358	26260709	490	146971											
UTRN	7402	broad.mit.edu	37	chr6	145051673	145051673	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacacatgctaggagaacaaAaaacccaaaatcaagtagga	7	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145051673	T	T	145051673	1	4	183	0	1	0	0	0	0	0	0	0	17230	29	1	5		5	UTRN	6	145051673	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	197315	145051673	26063394	491	146972											
GRM1	2911	broad.mit.edu	37	chr6	146480400	146480400	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtccgttctctccattccTgtgactaacaagttgttatt	6	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146480400	A	A	146480400	1	1	183	0	1	0	0	0	0	0	0	0	6862	1595	55	5		5	GRM1	6	146480400	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1428727	146480400	24634667	492	146973											
SYNE1	23345	broad.mit.edu	37	chr6	152716829	152716829	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagggaaagaaaatgccttaGagaaattcttacatgcttgt	9	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152716829	C	C	152716829	1	2	183	0	1	0	0	0	0	0	0	0	15564	957	33	4		4	SYNE1	6	152716829	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	6236429	152716829	18398238	493	146974											
SLC22A3	6581	broad.mit.edu	37	chr6	160828311	160828311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaatcaaccttcctcttcCtcatgtgtcctttaacaaag	4	12	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160828311	A	A	160828311	1	1	183	0	1	0	0	0	0	0	0	0	14569	696	24	2		2	SLC22A3	6	160828311	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8111482	160828311	10286756	494	146975											
PARK2	5071	broad.mit.edu	37	chr6	161969831	161969831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatataatcccagcccatgtGcaaaagcaaacaaggacagg	8	10	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161969831	T	T	161969831	1	4	183	0	1	0	0	0	0	0	0	0	11543	1334	46	3		3	PARK2	6	161969831	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1141520	161969831	9145236	495	146976											
PACRG	135138	broad.mit.edu	37	chr6	163378326	163378326	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgattttctgctcctcgatAaagaaagcacgcttgatcct	7	10	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163378326	G	G	163378326	1	3	183	0	1	0	0	0	0	0	0	0	11464	377	13	5		5	PACRG	6	163378326	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1408495	163378326	7736741	496	146977											
T	6862	broad.mit.edu	37	chr6	166577955	166577955	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatcacagggccaagagCctcgcatggcaaaaaggcaa	10	12	1	1	rs141621646	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166577955	A	A	166577955	1	1	183	0	1	0	0	0	0	0	0	0	15607	754	26	3		3	T	6	166577955	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3199629	166577955	4537112	497	146978											
GPR31	2853	broad.mit.edu	37	chr6	167571250	167571250	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagcagacccagcccacactCcagccccagcaagacaccca	6	21	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167571250	G	G	167571250	3	3	183	1	0	0	0	0	1	0	0	0	6752	864	30	4	892	4	GPR31	6	167571250	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	993295	167571250	3543817	498	146979											
THBS2	7058	broad.mit.edu	37	chr6	169648571	169648571	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccggctcttttccgcctGcaggtgctcgtagaagggct	12	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169648571	A	A	169648571	4	1	183	1	0	0	0	0	0	1	0	0	15977	1328	46	4	3048	4	THBS2	6	169648571	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2077321	169648571	1466496	499	146980											
NUDT1	4521	broad.mit.edu	37	chr7	2289455	2289455	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggcatggcaccatgccCtgacggcctccctcccctgc	11	18	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2289455	G	G	2289455	1	3	183	0	1	0	0	0	0	0	0	0	10820	696	24	4		4	NUDT1	7	2289455	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08		2289455	156849208	500	146981											
C7orf28B	221960	broad.mit.edu	37	chr7	6862915	6862915	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataggggtaagtggttggacTctgagttgagaaagaacgcc	15	5	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6862915	A	A	6862915	1	1	183	0	1	0	0	0	0	0	0	0	2409	1566	54	5		5	C7orf28B	7	6862915	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	4573460	6862915	152275748	501	146982											
THSD7A	221981	broad.mit.edu	37	chr7	11418944	11418944	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatttatactagccatgcaAggaatctttggaagtctaac	8	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11418944	T	T	11418944	1	4	183	0	1	0	0	0	0	0	0	0	16002	87	3	5		5	THSD7A	7	11418944	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	4556029	11418944	147719719	502	146983											
THSD7A	221981	broad.mit.edu	37	chr7	11630033	11630033	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatatcccttcagagcaatCacatgctcagtcagtcttca	5	12	6	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11630033	A	A	11630033	1	1	183	0	1	0	0	0	0	0	0	0	16002	841	29	3		3	THSD7A	7	11630033	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	211089	11630033	147508630	503	146984											
TMEM195	392636	broad.mit.edu	37	chr7	15430314	15430314	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgcactttgattggttcAaatgtattaatgggatgtgt	10	5	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15430314	T	T	15430314	3	4	183	1	0	0	0	0	1	0	0	0	16240	127	5	5	557	5	TMEM195	7	15430314	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	3800281	15430314	143708349	504	146985											
TMEM195	392636	broad.mit.edu	37	chr7	15601532	15601532	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgcttgaagcctgaggCtgaacaaagaggacgagatg	13	7	1	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15601532	A	A	15601532	1	1	183	0	1	0	0	0	0	0	0	0	16240	812	28	3		3	TMEM195	7	15601532	5'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	171218	15601532	143537131	505	146986											
HDAC9	9734	broad.mit.edu	37	chr7	18868900	18868900	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctggcggtcacctgcccCgtgcatgtttctgaagcctc	10	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18868900	T	T	18868900	1	4	183	0	1	0	0	0	0	0	0	0	7081	667	23	4		4	HDAC9	7	18868900	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3267368	18868900	140269763	506	146987											
FERD3L	222894	broad.mit.edu	37	chr7	19184711	19184711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcacccttttcctcttgGggcggcctaatagggagaca	11	11	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19184711	T	T	19184711	3	4	183	1	0	0	0	0	1	0	0	0	5873	1232	43	2	229	2	FERD3L	7	19184711	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	315811	19184711	139953952	507	146988											
DNAH11	8701	broad.mit.edu	37	chr7	21747563	21747563	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttactgtttatgtgttggCattattggaaatatagcaga	9	4	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21747563	G	G	21747563	1	3	183	0	1	0	0	0	0	0	0	0	4639	725	25	4		4	DNAH11	7	21747563	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2562852	21747563	137391100	508	146989											
HOXA5	3202	broad.mit.edu	37	chr7	27181480	27181480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggaaggcccctcctgccgCggccatgctcatgcttttca	10	16	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27181480	A	A	27181480	3	1	183	1	0	0	0	0	1	0	0	0	7362	768	27	3	29	3	HOXA5	7	27181480	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5433917	27181480	131957183	509	146990											
C7orf16	10842	broad.mit.edu	37	chr7	31736734	31736734	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtccccctttgcagcaggtAaaaaagctggtgcagggcat	12	10	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31736734	T	T	31736734	1	4	183	0	1	0	0	0	0	0	0	0	2403	377	13	5		5	C7orf16	7	31736734	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	4555254	31736734	127401929	510	146991											
HERPUD2	64224	broad.mit.edu	37	chr7	35709856	35709856	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatgccaatgcttcatgaCtttctctattggtgctggat	10	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35709856	T	T	35709856	3	4	183	1	0	0	0	0	1	0	0	0	7131	565	20	4	936	4	HERPUD2	7	35709856	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3973122	35709856	123428807	511	146992											
ELMO1	9844	broad.mit.edu	37	chr7	37382025	37382025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacacaatccaagtggatgCtggaagagtataaaaacccc	9	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37382025	A	A	37382025	1	1	183	0	1	0	0	0	0	0	0	0	5107	812	28	3		3	ELMO1	7	37382025	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1672169	37382025	121756638	512	146993											
TARP	445347	broad.mit.edu	37	chr7	38305252	38305252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaaaatagtgggcttgGgggaaacatctgcatcaagt	13	5	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38305252	T	T	38305252	3	4	183	1	0	0	0	0	1	0	0	0	15677	1232	43	2	504	2	TARP	7	38305252	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	923227	38305252	120833411	513	146994											
AMPH	273	broad.mit.edu	37	chr7	38471793	38471793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttattagtggcttaccgtcCataggtcccagggcaatgtc	11	10	0	0	rs145380938		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38471793	A	A	38471793	3	1	183	1	0	0	0	0	1	0	0	0	588	595	21	2	969	2	AMPH	7	38471793	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	166541	38471793	120666870	514	146995											
POU6F2	11281	broad.mit.edu	37	chr7	39125441	39125441	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttttttcctccccttcaCtcttttcgcccatcctagga	3	15	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39125441	T	T	39125441	1	4	183	0	1	0	0	0	0	0	0	0	12381	580	20	4		4	POU6F2	7	39125441	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	653648	39125441	120013222	515	146996											
C7orf25	79020	broad.mit.edu	37	chr7	42971888	42971888	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgctccaagagcatgcGgggtgttgtagttctaagaa	14	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42971888	T	T	42971888	1	4	183	0	1	0	0	0	0	0	0	0	2405	1131	39	1		1	C7orf25	7	42971888	5'Flank	SNP	G	TCGA-64-1676-01A-01W-0928-08	3846447	42971888	116166775	516	146997											
HECW1	23072	broad.mit.edu	37	chr7	43436451	43436451	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgatgagaccgtccaaggAcaaggaagtcggaggctgat	15	8	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43436451	G	G	43436451	2	3	183	1	0	0	0	0	0	0	0	1	7109	262	10	5		5	HECW1	7	43436451	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	464563	43436451	115702212	517	146998											
HECW1	23072	broad.mit.edu	37	chr7	43447307	43447307	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagatcataggcaacaccGtgaaccccatctggcaggcc	9	15	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43447307	T	T	43447307	3	4	183	1	0	0	0	0	1	0	0	0	7109	1145	40	3	800	3	HECW1	7	43447307	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	10856	43447307	115691356	518	146999											
URGCP	55665	broad.mit.edu	37	chr7	43918478	43918478	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcttgttgcaggaaactgTctgaggagagcagcagggca	14	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43918478	A	A	43918478	3	1	183	1	0	0	0	0	1	0	0	0	17152	1667	58	5	2215	5	URGCP	7	43918478	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	471171	43918478	115220185	519	147000											
POLM	27434	broad.mit.edu	37	chr7	44119289	44119289	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcagaaggtgaggaggcGgccctcactgccttcaaagc	13	12	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44119289	A	A	44119289	3	1	183	1	0	0	0	0	1	0	0	0	12301	1116	39	4	993	4	POLM	7	44119289	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	200811	44119289	115019374	520	147001											
ZMIZ2	83637	broad.mit.edu	37	chr7	44801258	44801258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcccacactctcagggCccgttttctgggtgtccacc	8	18	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44801258	A	A	44801258	1	1	183	0	1	0	0	0	0	0	0	0	17823	754	26	3		3	ZMIZ2	7	44801258	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	681969	44801258	114337405	521	147002											
TNS3	64759	broad.mit.edu	37	chr7	47479071	47479071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccaaaggctcccagagcCgcccaccgctcaccaggtag	10	18	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47479071	A	A	47479071	1	1	183	0	1	0	0	0	0	0	0	0	16467	667	23	1		1	TNS3	7	47479071	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2677813	47479071	111659592	522	147003											
PKD1L1	168507	broad.mit.edu	37	chr7	47869180	47869180	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcttttccaagcaaaaCccaaggccatgaggcatacc	6	14	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47869180	T	T	47869180	3	4	183	1	0	0	0	0	1	0	0	0	12059	507	18	4	2027	4	PKD1L1	7	47869180	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	390109	47869180	111269483	523	147004											
ZPBP	11055	broad.mit.edu	37	chr7	50121455	50121455	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgttgcgttacacataaCacgtgtggactcttttgatg	10	7	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50121455	A	A	50121455	2	1	183	1	0	0	0	0	0	0	0	1	18348	465	17	3		3	ZPBP	7	50121455	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	2252275	50121455	109017208	524	147005											
POM121L12	285877	broad.mit.edu	37	chr7	53104085	53104085	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctctgaagccgagcctcGgcccctggagcctcagtttt	12	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104085	T	T	53104085	3	4	183	1	0	0	0	0	1	0	0	0	12336	1116	39	1	723	1	POM121L12	7	53104085	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2982630	53104085	106034578	525	147006											
WBSCR22	114049	broad.mit.edu	37	chr7	73101344	73101344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtagatgaggctgtggaccGagagatagagggagacctgc	17	6	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73101344	T	T	73101344	3	4	183	1	0	0	0	0	1	0	0	0	17392	1058	37	3	299	3	WBSCR22	7	73101344	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	19997259	73101344	86037319	526	147007											
CLIP2	7461	broad.mit.edu	37	chr7	73768231	73768231	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcgggacgaagactggcGtggtgcggtacgtgggggag	22	6	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73768231	T	T	73768231	3	4	183	1	0	0	0	0	1	0	0	0	3565	1145	40	3	710	3	CLIP2	7	73768231	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	666887	73768231	85370432	527	147008											
TRIM74	378108	broad.mit.edu	37	chr7	75028155	75028155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggtgagtgctggacagGgggaggggagtggacaggac	24	4	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75028155	T	T	75028155	1	4	183	0	1	0	0	0	0	0	0	0	16672	1247	43	2		2	TRIM74	7	75028155	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1259924	75028155	84110508	528	147009											
MAGI2	9863	broad.mit.edu	37	chr7	78130849	78130849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacatcatttatatcccGctatgacctttttggcactg	6	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78130849	T	T	78130849	1	4	183	0	1	0	0	0	0	0	0	0	9283	1102	38	3		3	MAGI2	7	78130849	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3102694	78130849	81007814	529	147010											
HGF	3082	broad.mit.edu	37	chr7	81372118	81372118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgaaacagaatgcaggctGggtacaaagacagcgagaga	13	7	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81372118	T	T	81372118	1	4	183	0	1	0	0	0	0	0	0	0	7152	1363	47	2		2	HGF	7	81372118	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3241269	81372118	77766545	530	147011											
HGF	3082	broad.mit.edu	37	chr7	81388081	81388081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatgctattgaaggggaaCcagaggcattgttttcttgc	12	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81388081	A	A	81388081	3	1	183	1	0	0	0	0	1	0	0	0	7152	508	18	3	1976	3	HGF	7	81388081	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	15963	81388081	77750582	531	147012											
CACNA2D1	781	broad.mit.edu	37	chr7	81978919	81978919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccacttgctgtttttgCcagtgtgacaaggtcttctt	9	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81978919	A	A	81978919	3	1	183	1	0	0	0	0	1	0	0	0	2574	739	26	3	3285	3	CACNA2D1	7	81978919	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	590838	81978919	77159744	532	147013											
PCLO	27445	broad.mit.edu	37	chr7	82581394	82581394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcaggaagagtagttgCaggctgctgtgctgtgcagc	14	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82581394	A	A	82581394	3	1	183	1	0	0	0	0	1	0	0	0	11677	710	25	3	6654	3	PCLO	7	82581394	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	602475	82581394	76557269	533	147014											
SEMA3D	223117	broad.mit.edu	37	chr7	84658677	84658677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagaagcagagggacaaGgtgtcatccaagaattcact	12	7	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84658677	T	T	84658677	1	4	183	0	1	0	0	0	0	0	0	0	14140	1015	35	2		2	SEMA3D	7	84658677	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2077283	84658677	74479986	534	147015											
ZNF804B	219578	broad.mit.edu	37	chr7	88965693	88965693	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaagtcgaagacggattaGaaatgtgtcataaatctatc	8	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88965693	T	T	88965693	4	4	183	1	0	0	0	0	0	1	0	0	18300	943	33	3	3411	3	ZNF804B	7	88965693	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4307016	88965693	70172970	535	147016											
KRIT1	889	broad.mit.edu	37	chr7	91830045	91830045	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcttgagtaacagttacttCtctttcatgaatttctttca	6	8	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91830045	G	G	91830045	1	3	183	0	1	0	0	0	0	0	0	0	8516	928	32	4		4	KRIT1	7	91830045	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	2864352	91830045	67308618	536	147017											
TFPI2	7980	broad.mit.edu	37	chr7	93519434	93519434	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcgcgagagtcctgggtgcGcgcagggcacttactttcta	14	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93519434	C	C	93519434	1	2	183	0	1	0	0	0	0	0	0	0	15932	1102	38	4		4	TFPI2	7	93519434	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1689389	93519434	65619229	537	147018											
SLC25A13	10165	broad.mit.edu	37	chr7	95818951	95818951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacttccatgggtgtaaCctgaccaaatttctgagctg	9	10	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95818951	A	A	95818951	3	1	183	1	0	0	0	0	1	0	0	0	14589	507	18	3	1284	3	SLC25A13	7	95818951	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2299517	95818951	63319712	538	147019											
STAG3	10734	broad.mit.edu	37	chr7	99796385	99796385	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcctttatcatctccttGggccatctcctccctctgtg	5	15	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99796385	A	A	99796385	1	1	183	0	1	0	0	0	0	0	0	0	15362	1363	47	4		4	STAG3	7	99796385	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3977434	99796385	59342278	539	147020											
ZAN	7455	broad.mit.edu	37	chr7	100373326	100373327	+	Missense_Mutation	DNP	CC	AA	AA													gtcaccctccccgccatctcCcagatccctggggtcagtgt							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	100373327	AA	AA	100373326	3	1	183	1	0	0	0	0	1	0	0	0	17640	610	22	2	6188	2	ZAN	7	100373326	Missense_Mutation	DNP	CC	TCGA-64-1676-01A-01W-0928-08	576941	100373326	58765337	540	147021											
MUC17	140453	broad.mit.edu	37	chr7	100683947	100683947	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtcacttctactgaagtcAgttcatctcctacacctgct	6	13	5	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100683947	G	G	100683947	3	3	183	1	0	0	0	0	1	0	0	0	10068	188	7	5	9260	5	MUC17	7	100683947	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	310621	100683947	58454716	541	147022											
MOGAT3	346606	broad.mit.edu	37	chr7	100843433	100843433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcggggagctcaggcCccagcacaaggaagggctcc	16	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100843433	A	A	100843433	1	1	183	0	1	0	0	0	0	0	0	0	9790	638	22	2		2	MOGAT3	7	100843433	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	159486	100843433	58295230	542	147023											
LRWD1	222229	broad.mit.edu	37	chr7	102106703	102106703	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtggagaacctgaatcggGagctgaccagcagggtaagg	17	7	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102106703	A	A	102106703	3	1	183	1	0	0	0	0	1	0	0	0	9134	1175	41	4	428	4	LRWD1	7	102106703	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1263270	102106703	57031960	543	147024											
RELN	5649	broad.mit.edu	37	chr7	103136908	103136908	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcttttcatgtgctaatctAtctgaagacataagcagaaa	7	7	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103136908	T	T	103136908	1	4	183	0	1	0	0	0	0	0	0	0	13328	464	16	5		5	RELN	7	103136908	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1030205	103136908	56001755	544	147025											
RELN	5649	broad.mit.edu	37	chr7	103275876	103275876	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctttccaacatacctggGctcatgatagctgagatatg	9	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103275876	T	T	103275876	3	4	183	1	0	0	0	0	1	0	0	0	13328	1203	42	3	8109	3	RELN	7	103275876	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	138968	103275876	55862787	545	147026											
RELN	5649	broad.mit.edu	37	chr7	103393679	103393679	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagctgaatcaagagaggaaAgaagaaagacaactgatcag	12	5	2	6			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103393679	C	C	103393679	1	2	183	0	1	0	0	0	0	0	0	0	13328	87	3	5		5	RELN	7	103393679	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	117803	103393679	55744984	546	147027											
PIK3CG	5294	broad.mit.edu	37	chr7	106513259	106513259	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgattctggaagcctatctGaggggctgtggcacagccat	14	9	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106513259	T	T	106513259	2	4	183	1	0	0	0	0	0	0	0	1	12011	1277	45	3		3	PIK3CG	7	106513259	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3119580	106513259	52625404	547	147028											
LAMB4	22798	broad.mit.edu	37	chr7	107667262	107667262	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcctaacagagaggaacaGgcacagccttgtggttccgc	11	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107667262	C	C	107667262	1	2	183	0	1	0	0	0	0	0	0	0	8685	1015	35	4		4	LAMB4	7	107667262	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1154003	107667262	51471401	548	147029											
NRCAM	4897	broad.mit.edu	37	chr7	107834586	107834586	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctctttgcacaactgcatAttcgggctgtttaacgatcc	7	13	1	0	rs146218985	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107834586	T	T	107834586	3	4	183	1	0	0	0	0	1	0	0	0	10739	449	16	5	2352	5	NRCAM	7	107834586	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	167324	107834586	51304077	549	147030											
ING3	54556	broad.mit.edu	37	chr7	120608099	120608099	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcttcaggaactggtgcagGggcaattaccatggcagctg	13	9	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120608099	C	C	120608099	3	2	183	1	0	0	0	0	1	0	0	0	7807	1232	43	4	714	4	ING3	7	120608099	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	12773513	120608099	38530564	550	147031											
C7orf58	79974	broad.mit.edu	37	chr7	120687058	120687058	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatcaaaaggtaaatactcTcaagatgtgcacagatttta	6	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120687058	A	A	120687058	1	1	183	0	1	0	0	0	0	0	0	0	2430	1566	54	5		5	C7orf58	7	120687058	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	78959	120687058	38451605	551	147032											
PTPRZ1	5803	broad.mit.edu	37	chr7	121652315	121652315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaaagcacagtcatgcCcaacatgtatgataatgtaa	7	8	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121652315	A	A	121652315	3	1	183	1	0	0	0	0	1	0	0	0	12922	623	22	2	3261	2	PTPRZ1	7	121652315	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	965257	121652315	37486348	552	147033											
SLC13A1	6561	broad.mit.edu	37	chr7	122809425	122809425	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattattgtggagctgtgctCttagcttaactagcaccgta	9	9	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122809425	T	T	122809425	1	4	183	0	1	0	0	0	0	0	0	0	14504	928	32	4		4	SLC13A1	7	122809425	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1157110	122809425	36329238	553	147034											
GPR37	2861	broad.mit.edu	37	chr7	124386510	124386510	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttccctataaggaaaaaTatgaattaaaaactttcacg	4	6	1	1	rs113476925		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124386510	C	C	124386510	1	2	183	0	1	0	0	0	0	0	0	0	6756	1421	49	5		5	GPR37	7	124386510	3'UTR	SNP	T	TCGA-64-1676-01A-01W-0928-08	1577085	124386510	34752153	554	147035											
GRM8	2918	broad.mit.edu	37	chr7	126173167	126173167	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagtgaccatcaagaggaTactgtatccaagtgaacaaa	8	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126173167	C	C	126173167	3	2	183	1	0	0	0	0	1	0	0	0	6869	1406	49	5	519	5	GRM8	7	126173167	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	1786657	126173167	32965496	555	147036											
FLNC	2318	broad.mit.edu	37	chr7	128496779	128496779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaaggatggaggctaagcCaccaaccctttatccacaga	11	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128496779	A	A	128496779	1	1	183	0	1	0	0	0	0	0	0	0	5993	609	21	2		2	FLNC	7	128496779	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2323612	128496779	30641884	556	147037											
AHCYL2	23382	broad.mit.edu	37	chr7	129053373	129053373	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttatatgatttgcacatttAttttctcattctgtggatta	6	5	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129053373	G	G	129053373	1	3	183	0	1	0	0	0	0	0	0	0	411	464	16	5		5	AHCYL2	7	129053373	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	556594	129053373	30085290	557	147038											
PLXNA4	91584	broad.mit.edu	37	chr7	131864655	131864655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caatgtacaccatccccgggGagtactccatgccaccgaca	8	16	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131864655	T	T	131864655	3	4	183	1	0	0	0	0	1	0	0	0	12217	1174	41	3	2071	3	PLXNA4	7	131864655	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2811282	131864655	27274008	558	147039											
PLXNA4	91584	broad.mit.edu	37	chr7	132192299	132192299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtccttcaccttgagcCaggccaggtccagcgtgccc	12	15	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132192299	A	A	132192299	3	1	183	1	0	0	0	0	1	0	0	0	12217	595	21	2	4968	2	PLXNA4	7	132192299	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	327644	132192299	26946364	559	147040											
AKR1B15	441282	broad.mit.edu	37	chr7	134261814	134261814	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggtaagtttccggctgGtcgggcctggtattcctcag	13	10	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134261814	T	T	134261814	1	4	183	0	1	0	0	0	0	0	0	0	468	1276	44	3		3	AKR1B15	7	134261814	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2069515	134261814	24876849	560	147041											
CALD1	800	broad.mit.edu	37	chr7	134552466	134552466	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagacatcatctggtctccCtgaacctgaaatcacaccat	5	15	4	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134552466	A	A	134552466	1	1	183	1	0	0	0	0	0	0	0	0	2607	696	24	2		2	CALD1	7	134552466	Translation_Start_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	290652	134552466	24586197	561	147042											
CNOT4	4850	broad.mit.edu	37	chr7	135078627	135078627	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacccaacaacctgaaaaTatgagttattcaaaaattct	3	10	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135078627	C	C	135078627	1	2	183	0	1	0	0	0	0	0	0	0	3653	1421	49	5		5	CNOT4	7	135078627	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	526161	135078627	24060036	562	147043											
NUP205	23165	broad.mit.edu	37	chr7	135286354	135286354	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatctctgaagtcatttttCactgtaagattctctctctg	6	9	5	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135286354	T	T	135286354	1	4	183	0	1	0	0	0	0	0	0	0	10854	841	29	4		4	NUP205	7	135286354	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	207727	135286354	23852309	563	147044											
DGKI	9162	broad.mit.edu	37	chr7	137151659	137151659	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaacttacctgagatctgtCtattcgataaaagcgatcag	7	8	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137151659	T	T	137151659	5	4	183	1	0	0	0	0	0	0	1	0	4511	927	32	4	736	4	DGKI	7	137151659	Splice_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	1865305	137151659	21987004	564	147045											
DGKI	9162	broad.mit.edu	37	chr7	137172361	137172361	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaaataaactcacctcctGtaggcggtctatgtacatac	7	11	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137172361	A	A	137172361	4	1	183	1	0	0	0	0	0	1	0	0	4511	1386	48	4	868	4	DGKI	7	137172361	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	20702	137172361	21966302	565	147046											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138768597	138768597	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgttctggaccacgtcgGggttcagcccgtgctccctc	13	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138768597	A	A	138768597	3	1	183	1	0	0	0	0	1	0	0	0	17701	1232	43	4	2130	4	ZC3HAV1	7	138768597	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1596236	138768597	20370066	566	147047											
CLEC2L	154790	broad.mit.edu	37	chr7	139219033	139219033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactaccaagaggccagaagGcagaacttatgctgactacg	11	10	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139219033	T	T	139219033	1	4	183	0	1	0	0	0	0	0	0	0	3541	1218	42	3		3	CLEC2L	7	139219033	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	450436	139219033	19919630	567	147048											
WEE2	494551	broad.mit.edu	37	chr7	141413964	141413964	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctaactgataaggaatgtCtttactaatgctattatgac	7	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141413964	A	A	141413964	1	1	183	0	1	0	0	0	0	0	0	0	17472	928	32	3		3	WEE2	7	141413964	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2194931	141413964	17724699	568	147049											
EPHB6	2051	broad.mit.edu	37	chr7	142566456	142566456	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gacccctcatggtgctgacgGagttcatggagcttggcccc	13	13	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142566456	T	T	142566456	4	4	183	1	0	0	0	0	0	1	0	0	5220	1175	41	3	2287	3	EPHB6	7	142566456	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1152492	142566456	16572207	569	147050											
KEL	3792	broad.mit.edu	37	chr7	142640545	142640546	+	Intron	DNP	CT	TA	TA													ggcccctcttgggaaactccCtacctacccttacagagtga							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	142640546	TA	TA	142640545	1	4	183	0	1	0	0	0	0	0	0	0	8212	696	24	4		4	KEL	7	142640545	Intron	DNP	CT	TCGA-64-1676-01A-01W-0928-08	74089	142640545	16498118	570	147051											
KEL	3792	broad.mit.edu	37	chr7	142650887	142650887	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctccccaatcccacctgCggcgaacctctgctttagca	7	17	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142650887	A	A	142650887	1	1	183	0	1	0	0	0	0	0	0	0	8212	783	27	3		3	KEL	7	142650887	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	10342	142650887	16487776	571	147052											
TAS2R60	338398	broad.mit.edu	37	chr7	143141256	143141256	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctcaggattccgagagccCagtgtgcaggcacacataaa	10	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143141256	G	G	143141256	2	3	183	1	0	0	0	0	0	0	0	1	15704	581	21	4		4	TAS2R60	7	143141256	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	490369	143141256	15997407	572	147053											
TPK1	27010	broad.mit.edu	37	chr7	144320478	144320478	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctattatgcctttactattCctgtatcattagaatcatta	3	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144320478	A	A	144320478	1	1	183	0	1	0	0	0	0	0	0	0	16528	870	30	3		3	TPK1	7	144320478	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1179222	144320478	14818185	573	147054											
ZNF746	155061	broad.mit.edu	37	chr7	149191498	149191499	+	Frame_Shift_Ins	INS	-	C	C													gccagcttcttctcggccatINScccggttcgaccttctaggg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149191499	C	C	149191498	7	5	183	1	0	1	1	0	0	0	0	0	18258	1435	50	0	1840	0	ZNF746	7	149191498	Frame_Shift_Ins	INS	-	TCGA-64-1676-01A-01W-0928-08	4871020	149191498	9947165	574	147055											
GIMAP8	155038	broad.mit.edu	37	chr7	150174417	150174417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagaagaggaggtcaagcGctgtttgtcctgctgtgaaa	14	6	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150174417	T	T	150174417	3	4	183	1	0	0	0	0	1	0	0	0	6449	1087	38	3	1561	3	GIMAP8	7	150174417	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	982919	150174417	8964246	575	147056											
RNF32	140545	broad.mit.edu	37	chr7	156469174	156469174	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctctctccgctgctggcgGtcagcgcgtgggtgcaggca	15	15	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156469174	A	A	156469174	3	1	183	1	0	0	0	0	1	0	0	0	13599	1261	44	4	944	4	RNF32	7	156469174	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6294757	156469174	2669489	576	147057											
NCAPG2	54892	broad.mit.edu	37	chr7	158494630	158494630	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcatttattttgtaaccCtaatggaaaacacaatcata	5	7	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158494630	A	A	158494630	5	1	183	1	0	0	0	0	0	0	1	0	10303	695	24	2		2	NCAPG2	7	158494630	Splice_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	2025456	158494630	644033	577	147058											
ESYT2	57488	broad.mit.edu	37	chr7	158531731	158531731	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacctgcaggcatgcacgacCacgataagcttgtttctctg	9	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158531731	G	G	158531731	2	3	183	1	0	0	0	0	0	0	0	1	5307	581	21	4		4	ESYT2	7	158531731	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	37101	158531731	606932	578	147059											
CSMD1	64478	broad.mit.edu	37	chr8	2808659	2808659	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaacttcagctccactggcGaggcttcgctgaaggtggca	12	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2808659	T	T	2808659	4	4	183	1	0	0	0	0	0	1	0	0	3978	1059	37	3	536	3	CSMD1	8	2808659	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08		2808659	143555363	579	147060											
CSMD1	64478	broad.mit.edu	37	chr8	2966295	2966296	+	Intron	DNP	TG	AA	AA													gaaagacagaaagaggtggcTggctaaggatatttacttct							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2966296	AA	AA	2966295	1	1	183	0	1	0	0	0	0	0	0	0	3978	1595	55	5		5	CSMD1	8	2966295	Intron	DNP	TG	TCGA-64-1676-01A-01W-0928-08	157636	2966295	143397727	580	147061											
MTMR9	66036	broad.mit.edu	37	chr8	11180068	11180068	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cataaattacatcttatccaCaaatgtaattttaatccatt	1	8	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11180068	T	T	11180068	1	4	183	0	1	0	0	0	0	0	0	0	10044	493	17	4		4	MTMR9	8	11180068	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8213773	11180068	135183954	581	147062											
SGCZ	137868	broad.mit.edu	37	chr8	14181532	14181532	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacatgctgaagagataagGggattctaccctgctatttc	9	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14181532	A	A	14181532	1	1	183	0	1	0	0	0	0	0	0	0	14317	1247	43	4		4	SGCZ	8	14181532	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3001464	14181532	132182490	582	147063											
ASAH1	427	broad.mit.edu	37	chr8	17920780	17920780	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagacgtgtaatagcagttaAgattctaaatcaaagctgga	10	5	2	2	rs6993962	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17920780	T	T	17920780	1	4	183	0	1	0	0	0	0	0	0	0	1010	87	3	5		5	ASAH1	8	17920780	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	3739248	17920780	128443242	583	147064											
DOK2	9046	broad.mit.edu	37	chr8	21768283	21768283	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagggcactctccccagcCcggagggtataggacccccg	12	17	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21768283	G	G	21768283	2	3	183	1	0	0	0	0	0	0	0	1	4737	610	22	4		4	DOK2	8	21768283	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	3847503	21768283	124595739	584	147065											
ADRA1A	148	broad.mit.edu	37	chr8	26721658	26721658	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggacgaagcagccgaccaCgatgcccagcgttttggccg	14	13	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26721658	G	G	26721658	3	3	183	1	0	0	0	0	1	0	0	0	334	536	19	4	870	4	ADRA1A	8	26721658	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4953375	26721658	119642364	585	147066											
VDAC3	7419	broad.mit.edu	37	chr8	42251819	42251819	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtatgctattgtaactttCcagtttggggtaaaggttag	11	4	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42251819	A	A	42251819	1	1	183	0	1	0	0	0	0	0	0	0	17275	870	30	3		3	VDAC3	8	42251819	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	15530161	42251819	104112203	586	147067											
PRKDC	5591	broad.mit.edu	37	chr8	48712011	48712011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctttctcaaagaactctgCtttccatttgtgactcatga	6	10	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48712011	A	A	48712011	1	1	183	0	1	0	0	0	0	0	0	0	12627	812	28	3		3	PRKDC	8	48712011	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	6460192	48712011	97652011	587	147068											
XKR4	114786	broad.mit.edu	37	chr8	56362211	56362211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctcttaggggcacccatgGtggccatgccaggtgccaca	13	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56362211	A	A	56362211	1	1	183	0	1	0	0	0	0	0	0	0	17560	1276	44	4		4	XKR4	8	56362211	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	7650200	56362211	90001811	588	147069											
XKR4	114786	broad.mit.edu	37	chr8	56365614	56365614	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaggtgcctccccaacCtcctgggctggggcctgatc	14	14	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56365614	G	G	56365614	1	3	183	0	1	0	0	0	0	0	0	0	17560	696	24	4		4	XKR4	8	56365614	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3403	56365614	89998408	589	147070											
TMEM68	137695	broad.mit.edu	37	chr8	56669049	56669049	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggatggttggtagctcagtCttttctcacaaaagtacact	9	8	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56669049	A	A	56669049	1	1	183	0	1	0	0	0	0	0	0	0	16320	928	32	3		3	TMEM68	8	56669049	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	303435	56669049	89694973	590	147071											
CSPP1	79848	broad.mit.edu	37	chr8	68030483	68030483	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatctttcttttcatacagGattgcacctctgcctccacc	4	15	5	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68030483	C	C	68030483	3	2	183	1	0	0	0	0	1	0	0	0	3996	1188	41	4	1641	4	CSPP1	8	68030483	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	11361434	68030483	78333539	591	147072											
PRDM14	63978	broad.mit.edu	37	chr8	70981552	70981552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcttggttggagggtttggGaccatcctctgactgcttgc	13	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70981552	T	T	70981552	3	4	183	1	0	0	0	0	1	0	0	0	12561	1174	41	3	1199	3	PRDM14	8	70981552	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2951069	70981552	75382470	592	147073											
TRPA1	8989	broad.mit.edu	37	chr8	72968044	72968044	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgcataatgtagaggagtaCacccatcgttgtcttcatcc	8	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72968044	G	G	72968044	3	3	183	1	0	0	0	0	1	0	0	0	16702	478	17	4	2186	4	TRPA1	8	72968044	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1986492	72968044	73395978	593	147074											
HNF4G	3174	broad.mit.edu	37	chr8	76452274	76452274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggacccaacttacacaaCtttggagtttgaaactatgc	7	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76452274	A	A	76452274	1	1	183	0	1	0	0	0	0	0	0	0	7321	565	20	3		3	HNF4G	8	76452274	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3484230	76452274	69911748	594	147075											
ZFHX4	79776	broad.mit.edu	37	chr8	77761315	77761315	+	Frame_Shift_Del	DEL	C	-	-													ggcaaaagaagaggatgttgCaacaaaaaggtcaaaaccta							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77761315	-	-	77761315	7	5	183	1	0	1	0	1	0	0	0	0	17761	710	25	0	3618	0	ZFHX4	8	77761315	Frame_Shift_Del	DEL	C	TCGA-64-1676-01A-01W-0928-08	1309041	77761315	68602707	595	147076											
ZFHX4	79776	broad.mit.edu	37	chr8	77763833	77763833	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaacattctcttggtccActataattcagtttctcact	4	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77763833	T	T	77763833	3	4	183	1	0	0	0	0	1	0	0	0	17761	159	6	5	4710	5	ZFHX4	8	77763833	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	2518	77763833	68600189	596	147077											
PAG1	55824	broad.mit.edu	37	chr8	81905543	81905543	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggcagagagctgtgtcCtgcaaagagaccagtgcgtt	15	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81905543	A	A	81905543	5	1	183	1	0	0	0	0	0	0	1	0	11482	695	24	2		2	PAG1	8	81905543	Splice_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	4141710	81905543	64458479	597	147078											
PMP2	5375	broad.mit.edu	37	chr8	82355610	82355610	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcattaaatgataaaaagcCacttcaatgaagaaatgatt	5	5	2	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82355610	A	A	82355610	1	1	183	0	1	0	0	0	0	0	0	0	12233	609	21	2		2	PMP2	8	82355610	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	450067	82355610	64008412	598	147079											
PSKH2	85481	broad.mit.edu	37	chr8	87076322	87076322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcccacatgtccactgCactggtataaggcttcctta	8	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87076322	A	A	87076322	3	1	183	1	0	0	0	0	1	0	0	0	12771	710	25	3	439	3	PSKH2	8	87076322	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4720712	87076322	59287700	599	147080											
CNGB3	54714	broad.mit.edu	37	chr8	87641334	87641334	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaatatggtcactccacGcccagcagaggaaatgagtt	9	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87641334	T	T	87641334	1	4	183	0	1	0	0	0	0	0	0	0	3633	1102	38	3		3	CNGB3	8	87641334	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	565012	87641334	58722688	600	147081											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885855	88885855	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtagagggttttgtgcggGtatacccggagctcaggggt	17	7	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885855	T	T	88885855	4	4	183	1	0	0	0	0	0	1	0	0	4305	1256	44	3	846	3	DCAF4L2	8	88885855	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1244521	88885855	57478167	601	147082											
MMP16	4325	broad.mit.edu	37	chr8	89131199	89131199	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagaaaaataggaggtactCtttccttcaactatttgtat	6	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89131199	G	G	89131199	1	3	183	0	1	0	0	0	0	0	0	0	9748	928	32	4		4	MMP16	8	89131199	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	245344	89131199	57232823	602	147083											
RUNX1T1	862	broad.mit.edu	37	chr8	93004039	93004039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttggactgtaccgctgGcctgggctaatagtgcatgg	13	8	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93004039	T	T	93004039	2	4	183	1	0	0	0	0	0	0	0	1	13858	1190	42	3		3	RUNX1T1	8	93004039	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3872840	93004039	53359983	603	147084											
RUNX1T1	862	broad.mit.edu	37	chr8	93074682	93074683	+	Intron	DNP	CG	AA	AA													tgcccacatcagatacaacaCgctgtggggcagaaggtatt					rs139958778	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	93074683	AA	AA	93074682	1	1	183	0	1	0	0	0	0	0	0	0	13858	551	19	3		3	RUNX1T1	8	93074682	Intron	DNP	CG	TCGA-64-1676-01A-01W-0928-08	70643	93074682	53289340	604	147085											
RAD54B	25788	broad.mit.edu	37	chr8	95412526	95412526	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catttttgaaattctttcttCcaattattcaccaagcttcc	2	11	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95412526	T	T	95412526	4	4	183	1	0	0	0	0	0	1	0	0	13100	856	30	4	1658	4	RAD54B	8	95412526	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2337844	95412526	50951496	605	147086											
PGCP	10404	broad.mit.edu	37	chr8	97797421	97797421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaacctgcagcaagatgGgctggagaaagttcacctgg	12	10	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97797421	T	T	97797421	3	4	183	1	0	0	0	0	1	0	0	0	11881	1232	43	2	298	2	PGCP	8	97797421	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2384895	97797421	48566601	606	147087											
PGCP	10404	broad.mit.edu	37	chr8	97892084	97892084	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaagattccaacagcctgtAttacggtggaagatgcagaa	10	9	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97892084	T	T	97892084	3	4	183	1	0	0	0	0	1	0	0	0	11881	449	16	5	710	5	PGCP	8	97892084	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	94663	97892084	48471938	607	147088											
VPS13B	157680	broad.mit.edu	37	chr8	100352757	100352757	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgttgtgccccataaatgtGaagggggtggaggtgtctgg	17	5	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100352757	T	T	100352757	1	4	183	0	1	0	0	0	0	0	0	0	17317	1305	45	3		3	VPS13B	8	100352757	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2460673	100352757	46011265	608	147089											
SPAG1	6674	broad.mit.edu	37	chr8	101253240	101253240	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggccctaaaaaggcagtAtgagctttaaatcaagataa	8	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101253240	G	G	101253240	3	3	183	1	0	0	0	0	1	0	0	0	15091	449	16	5	2841	5	SPAG1	8	101253240	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	900483	101253240	45110782	609	147090											
PABPC1	26986	broad.mit.edu	37	chr8	101725027	101725027	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatccacagccttccccccAaaaaaaaagaaaaaaaaaaa	2	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101725027	C	C	101725027	1	2	183	0	1	0	0	0	0	0	0	0	11457	145	5	5		5	PABPC1	8	101725027	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	471787	101725027	44638995	610	147091											
DPYS	1807	broad.mit.edu	37	chr8	105404918	105404918	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacattaaaccaagtgtgatGtgtcaacaccactactacca	5	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105404918	T	T	105404918	1	4	183	0	1	0	0	0	0	0	0	0	4786	1392	48	3		3	DPYS	8	105404918	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3679891	105404918	40959104	611	147092											
RSPO2	340419	broad.mit.edu	37	chr8	108995490	108995490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctatgaagctgacacaGtctgagcaggctcatctttc	10	10	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108995490	T	T	108995490	1	4	183	0	1	0	0	0	0	0	0	0	13821	1044	36	3		3	RSPO2	8	108995490	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3590572	108995490	37368532	612	147093											
SYBU	55638	broad.mit.edu	37	chr8	110591950	110591951	+	Intron	INS	-	T	T													gggatcaagagttgtataacINSttttttttttcttttttaaa							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110591951	T	T	110591950	6	5	183	0	1	1	1	0	0	0	0	0	15545	580	20	0		0	SYBU	8	110591950	Intron	INS	-	TCGA-64-1676-01A-01W-0928-08	1596460	110591950	35772072	613	147094											
CSMD3	114788	broad.mit.edu	37	chr8	113253923	113253923	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttttagaaataatgaactCtagaaaaacaaatgacatta	4	4	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113253923	T	T	113253923	1	4	183	0	1	0	0	0	0	0	0	0	3980	928	32	4		4	CSMD3	8	113253923	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2661973	113253923	33110099	614	147095											
CSMD3	114788	broad.mit.edu	37	chr8	113504881	113504881	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgccattcattatattGcctggatcaaagcaggactc	9	10	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113504881	T	T	113504881	2	4	183	1	0	0	0	0	0	0	0	1	3980	1306	46	3		3	CSMD3	8	113504881	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	250958	113504881	32859141	615	147096											
CSMD3	114788	broad.mit.edu	37	chr8	113529424	113529424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcccattcatggggaccCctgggtcacgacacgcagtg	13	13	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113529424	A	A	113529424	3	1	183	1	0	0	0	0	1	0	0	0	3980	623	22	2	6704	2	CSMD3	8	113529424	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	24543	113529424	32834598	616	147097											
CSMD3	114788	broad.mit.edu	37	chr8	113988231	113988231	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtaacttgcactcgctgttCctcggaaagtctatggatgg	11	10	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113988231	A	A	113988231	4	1	183	1	0	0	0	0	0	1	0	0	3980	864	30	3	10206	3	CSMD3	8	113988231	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	458807	113988231	32375791	617	147098											
SLC30A8	169026	broad.mit.edu	37	chr8	118174010	118174010	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaccagagatgccttggCcacaatcacaaggaagtaca	9	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118174010	A	A	118174010	2	1	183	1	0	0	0	0	0	0	0	1	14675	726	26	3		3	SLC30A8	8	118174010	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	4185779	118174010	28190012	618	147099											
ENPP2	5168	broad.mit.edu	37	chr8	120631581	120631581	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatgtattgttgaatctAattacaaatgccatgccttg	7	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120631581	T	T	120631581	1	4	183	0	1	0	0	0	0	0	0	0	5172	377	13	5		5	ENPP2	8	120631581	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2457571	120631581	25732441	619	147100											
COL14A1	7373	broad.mit.edu	37	chr8	121220515	121220515	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccacagtgttgaaaaacttGatgtctttaactgaatatca	6	7	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121220515	A	A	121220515	2	1	183	1	0	0	0	0	0	0	0	1	3703	1281	45	4		4	COL14A1	8	121220515	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	588934	121220515	25143507	620	147101											
WDR67	93594	broad.mit.edu	37	chr8	124105754	124105754	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattttaataaagaaaaataGactacttgtataattttaaa	3	2	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124105754	T	T	124105754	1	4	183	0	1	0	0	0	0	0	0	0	17445	957	33	3		3	WDR67	8	124105754	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2885239	124105754	22258268	621	147102											
FER1L6	654463	broad.mit.edu	37	chr8	125109517	125109517	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcttaacaagggccgCctgcagatgtgggtggacat	12	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125109517	T	T	125109517	2	4	183	1	0	0	0	0	0	0	0	1	5872	726	26	4		4	FER1L6	8	125109517	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1003763	125109517	21254505	622	147103											
ADCY8	114	broad.mit.edu	37	chr8	131964130	131964130	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcacctgacgttctcatagcGatggatgtagatccgatgga	11	9	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131964130	C	C	131964130	3	2	183	1	0	0	0	0	1	0	0	0	300	1058	37	4	2594	4	ADCY8	8	131964130	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6854613	131964130	14399892	623	147104											
COL22A1	169044	broad.mit.edu	37	chr8	139626004	139626004	+	Intron	DEL	T	-	-													actgctaaaacatattacaaTtttttaacaatatatacagt							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139626004	-	-	139626004	6	5	183	0	1	1	0	1	0	0	0	0	3713	1508	52	0		0	COL22A1	8	139626004	Intron	DEL	T	TCGA-64-1676-01A-01W-0928-08	7661874	139626004	6738018	624	147105											
EIF2C2	27161	broad.mit.edu	37	chr8	141557553	141557553	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccgcaggcggaggtaaagGggccgggcctcacctgccct	16	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141557553	C	C	141557553	1	2	183	0	1	0	0	0	0	0	0	0	5046	1247	43	4		4	EIF2C2	8	141557553	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1931549	141557553	4806469	625	147106											
CYP11B2	1585	broad.mit.edu	37	chr8	143994002	143994002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccgcccgaggcactggcGcatgccaaagccaaagggca	14	15	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143994002	T	T	143994002	3	4	183	1	0	0	0	0	1	0	0	0	4179	1087	38	3	177	3	CYP11B2	8	143994002	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2436449	143994002	2370020	626	147107											
DMRT2	10655	broad.mit.edu	37	chr9	1056129	1056129	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaataattgttctgctgatCtgtagtgttgctgttacctt	8	6	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1056129	A	A	1056129	1	1	183	0	1	0	0	0	0	0	0	0	4626	928	32	3		3	DMRT2	9	1056129	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08		1056129	140157302	627	147108											
INSL4	3641	broad.mit.edu	37	chr9	5231684	5231684	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagacattcaccaccacccCaggagggtggctgctggaat	12	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5231684	T	T	5231684	3	4	183	1	0	0	0	0	1	0	0	0	7838	594	21	4	163	4	INSL4	9	5231684	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4175555	5231684	135981747	628	147109											
KDM4C	23081	broad.mit.edu	37	chr9	7013674	7013674	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggtcaaggagaacaacagGaagaacaaaagttagaagtt	11	4	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7013674	T	T	7013674	1	4	183	0	1	0	0	0	0	0	0	0	8200	1189	41	3		3	KDM4C	9	7013674	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1781990	7013674	134199757	629	147110											
PTPRD	5789	broad.mit.edu	37	chr9	8451872	8451872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattagaaatatctatctGggcaagaaaactactttact	6	6	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8451872	T	T	8451872	1	4	183	0	1	0	0	0	0	0	0	0	12907	1363	47	2		2	PTPRD	9	8451872	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1438198	8451872	132761559	630	147111											
PTPRD	5789	broad.mit.edu	37	chr9	8748031	8748031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaccgcggacccctggacCggcctgctagcccatgctcc	10	19	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8748031	A	A	8748031	1	1	183	0	1	0	0	0	0	0	0	0	12907	667	23	1		1	PTPRD	9	8748031	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	296159	8748031	132465400	631	147112											
PTPRD	5789	broad.mit.edu	37	chr9	8748125	8748125	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actactatgccccaattcagCaggaagcagttagagcggtt	10	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8748125	T	T	8748125	1	4	183	0	1	0	0	0	0	0	0	0	12907	725	25	4		4	PTPRD	9	8748125	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	94	8748125	132465306	632	147113											
C9orf93	203238	broad.mit.edu	37	chr9	15678675	15678675	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acacatgatatgtagtacatCtgccatatgtattaaaggtg	8	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15678675	T	T	15678675	1	4	183	0	1	0	0	0	0	0	0	0	2532	928	32	4		4	C9orf93	9	15678675	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	6930550	15678675	125534756	633	147114											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18639359	18639359	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttccagaaatttccagacAaagagatactgagaatggct	8	8	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18639359	C	C	18639359	3	2	183	1	0	0	0	0	1	0	0	0	274	131	5	5	810	5	ADAMTSL1	9	18639359	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	2960684	18639359	122574072	634	147115											
MLLT3	4300	broad.mit.edu	37	chr9	20365601	20365601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgatccacccgtgtcagcCtcccaaagtgccattaaggt	8	14	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20365601	A	A	20365601	1	1	183	0	1	0	0	0	0	0	0	0	9721	696	24	2		2	MLLT3	9	20365601	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1726242	20365601	120847830	635	147116											
UNC13B	10497	broad.mit.edu	37	chr9	35381261	35381261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaagcagtgctgggagaGgcctttggccataagtagga	15	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35381261	T	T	35381261	1	4	183	0	1	0	0	0	0	0	0	0	17111	1015	35	2		2	UNC13B	9	35381261	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	15015660	35381261	105832170	636	147117											
RECK	8434	broad.mit.edu	37	chr9	36112503	36112503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcttcttattttattcaActgaagactagtacttacaa	5	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36112503	G	G	36112503	1	3	183	0	1	0	0	0	0	0	0	0	13308	58	2	5		5	RECK	9	36112503	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	731242	36112503	105100928	637	147118											
FRMPD1	22844	broad.mit.edu	37	chr9	37746032	37746032	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatagggatggaccagtgcAgctgtcagttctcctatgcc	13	10	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37746032	T	T	37746032	3	4	183	1	0	0	0	0	1	0	0	0	6117	188	7	5	4061	5	FRMPD1	9	37746032	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	1633529	37746032	103467399	638	147119											
FAM75A3	727830	broad.mit.edu	37	chr9	40702903	40702903	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaagtgcctcccagccacCagaaccttcccttcccctag	5	20	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40702903	T	T	40702903	3	4	183	1	0	0	0	0	1	0	0	0	5672	594	21	4	574	4	FAM75A3	9	40702903	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2956871	40702903	100510528	639	147120											
TMEM2	23670	broad.mit.edu	37	chr9	74327059	74327059	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttatctgccaggaattcttCatgaggaagccaattgcact	9	9	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74327059	A	A	74327059	3	1	183	1	0	0	0	0	1	0	0	0	16244	826	29	3	1478	3	TMEM2	9	74327059	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	33624156	74327059	66886372	640	147121											
TMC1	117531	broad.mit.edu	37	chr9	75387409	75387409	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatgaatttcaggttgccGctctcctattttctagtggg	11	8	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75387409	A	A	75387409	2	1	183	1	0	0	0	0	0	0	0	1	16107	1074	38	4		4	TMC1	9	75387409	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1060350	75387409	65826022	641	147122											
TRPM6	140803	broad.mit.edu	37	chr9	77378052	77378052	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtacatctctgtaacccTagtggtgaaggaagggagaa	13	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77378052	C	C	77378052	5	2	183	1	0	0	0	0	0	0	1	0	16715	1536	53	5	2589	5	TRPM6	9	77378052	Splice_Site	SNP	T	TCGA-64-1676-01A-01W-0928-08	1990643	77378052	63835379	642	147123											
TRPM6	140803	broad.mit.edu	37	chr9	77423091	77423091	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcctgaaagaagggtatgCtgcaacaaaaacatgcaacg	10	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77423091	A	A	77423091	5	1	183	1	0	0	0	0	0	0	1	0	16715	811	28	3	4675	3	TRPM6	9	77423091	Splice_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	45039	77423091	63790340	643	147124											
OSTF1	26578	broad.mit.edu	37	chr9	77761566	77761566	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcagtttataatttccCtattttgcttttttccctcc	4	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77761566	T	T	77761566	1	4	183	0	1	0	0	0	0	0	0	0	11391	696	24	4		4	OSTF1	9	77761566	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	338475	77761566	63451865	644	147125											
PCSK5	5125	broad.mit.edu	37	chr9	78804692	78804692	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgcccatatcgatcttatGaagcaaagtatgatctttct	6	9	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78804692	T	T	78804692	1	4	183	0	1	0	0	0	0	0	0	0	11697	1305	45	3		3	PCSK5	9	78804692	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1043126	78804692	62408739	645	147126											
FLJ46321	389763	broad.mit.edu	37	chr9	84605324	84605324	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttcattgcatataacataCtattcaggtttcccagactg	5	10	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84605324	G	G	84605324	1	3	183	0	1	0	0	0	0	0	0	0	5990	580	20	4		4	FLJ46321	9	84605324	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5800632	84605324	56608107	646	147127											
FRMD3	257019	broad.mit.edu	37	chr9	85905627	85905627	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggagtgggaactgcggctCtgagtaatgttggctctgaa	15	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85905627	G	G	85905627	3	3	183	1	0	0	0	0	1	0	0	0	6110	912	32	4	715	4	FRMD3	9	85905627	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1300303	85905627	55307804	647	147128											
C9orf64	84267	broad.mit.edu	37	chr9	86559805	86559805	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagcaaacatggtgatacTggagatgtccttgaagcagc	11	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86559805	A	A	86559805	3	1	183	1	0	0	0	0	1	0	0	0	2515	1580	55	5	336	5	C9orf64	9	86559805	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	654178	86559805	54653626	648	147129											
COL15A1	1306	broad.mit.edu	37	chr9	101822338	101822338	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcccttggggatcaggcCttcatgatagtaggcttggt	12	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101822338	A	A	101822338	1	1	183	0	1	0	0	0	0	0	0	0	3704	696	24	2		2	COL15A1	9	101822338	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	15262533	101822338	39391093	649	147130											
COL15A1	1306	broad.mit.edu	37	chr9	101829430	101829430	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagttttcattcctgacatCaacagaagactgttgactta	7	9	2	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101829430	T	T	101829430	1	4	183	0	1	0	0	0	0	0	0	0	3704	841	29	4		4	COL15A1	9	101829430	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	7092	101829430	39384001	650	147131											
TGFBR1	7046	broad.mit.edu	37	chr9	101904899	101904899	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattacttaaacagatacaCagttactgtggaaggaatga	9	5	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101904899	T	T	101904899	3	4	183	1	0	0	0	0	1	0	0	0	15944	478	17	4	905	4	TGFBR1	9	101904899	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	75469	101904899	39308532	651	147132											
ALG2	85365	broad.mit.edu	37	chr9	101980430	101980430	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggactccaagggtccacccGaattaacagcaatgactggg	11	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101980430	A	A	101980430	3	1	183	1	0	0	0	0	1	0	0	0	519	1059	37	4	217	4	ALG2	9	101980430	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	75531	101980430	39233001	652	147133											
OR13F1	138805	broad.mit.edu	37	chr9	107267441	107267441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaaagaggtgaaagtgGccttgaaaaaattgctgatt	12	4	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107267441	T	T	107267441	3	4	183	1	0	0	0	0	1	0	0	0	11035	1203	42	3	900	3	OR13F1	9	107267441	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	5287011	107267441	33945990	653	147134											
OR13C8	138802	broad.mit.edu	37	chr9	107332060	107332060	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtatgacagggtcgaatctGattgttctggttattccatt	10	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107332060	T	T	107332060	2	4	183	1	0	0	0	0	0	0	0	1	11032	1277	45	3		3	OR13C8	9	107332060	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	64619	107332060	33881371	654	147135											
SVEP1	79987	broad.mit.edu	37	chr9	113166889	113166889	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtacaatatagtttctgatCtatccttggatttaggaagc	8	6	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113166889	A	A	113166889	1	1	183	0	1	0	0	0	0	0	0	0	15538	928	32	3		3	SVEP1	9	113166889	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5834829	113166889	28046542	655	147136											
SVEP1	79987	broad.mit.edu	37	chr9	113221313	113221313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcagaaggccttccctgCattaggttggtaatagtcac	11	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113221313	A	A	113221313	3	1	183	1	0	0	0	0	1	0	0	0	15538	710	25	3	7432	3	SVEP1	9	113221313	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	54424	113221313	27992118	656	147137											
OR2K2	26248	broad.mit.edu	37	chr9	114090287	114090287	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagaccgtagccatccGtgcacagacgcacctgttca	10	15	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114090287	T	T	114090287	2	4	183	1	0	0	0	0	0	0	0	1	11099	1144	40	3		3	OR2K2	9	114090287	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	868974	114090287	27123144	657	147138											
AKNA	80709	broad.mit.edu	37	chr9	117139580	117139580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccagaagccacccagccCctggcctgaccatgcccaag	9	19	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117139580	A	A	117139580	3	1	183	1	0	0	0	0	1	0	0	0	463	622	22	2	3892	2	AKNA	9	117139580	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3049293	117139580	24073851	658	147139											
TNC	3371	broad.mit.edu	37	chr9	117797466	117797466	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caactagcattgaggagttgTtatatacttaaaataccttg	7	6	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117797466	C	C	117797466	1	2	183	0	1	0	0	0	0	0	0	0	16393	1740	60	5		5	TNC	9	117797466	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	657886	117797466	23415965	659	147140											
PAPPA	5069	broad.mit.edu	37	chr9	118969862	118969862	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caacttggccatgggacaagGaggccctgatgcacttaggt	13	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969862	A	A	118969862	3	1	183	1	0	0	0	0	1	0	0	0	11526	1175	41	4	1616	4	PAPPA	9	118969862	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1172396	118969862	22243569	660	147141											
PAPPA	5069	broad.mit.edu	37	chr9	118982315	118982315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccctccaggaaaccagCgcctgttgccctcgcccccc	9	21	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118982315	A	A	118982315	3	1	183	1	0	0	0	0	1	0	0	0	11526	768	27	3	2036	3	PAPPA	9	118982315	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	12453	118982315	22231116	661	147142											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123170627	123170627	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagaagggcctcagtacctCtcagtctcctgtgctcttca	9	13	5	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123170627	A	A	123170627	3	1	183	1	0	0	0	0	1	0	0	0	3176	913	32	3	989	3	CDK5RAP2	9	123170627	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4188312	123170627	18042804	662	147143											
PTGS1	5742	broad.mit.edu	37	chr9	125140305	125140305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaccatccgtgagctgggCcttcagccctcactccttcc	8	18	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125140305	A	A	125140305	1	1	183	0	1	0	0	0	0	0	0	0	12861	754	26	3		3	PTGS1	9	125140305	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1969678	125140305	16073126	663	147144											
SCAI	286205	broad.mit.edu	37	chr9	127734179	127734179	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttgcaaaagataagagaTacatatgaggaacattttaa	8	3	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127734179	A	A	127734179	1	1	183	0	1	0	0	0	0	0	0	0	13981	1421	49	5		5	SCAI	9	127734179	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	2593874	127734179	13479252	664	147145											
SH2D3C	10044	broad.mit.edu	37	chr9	130509325	130509325	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctcttggtaaaggtcgcGcctcataaaagaggcggaaa	11	8	2	1	rs144177398	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130509325	A	A	130509325	1	1	183	0	1	0	0	0	0	0	0	0	14347	1102	38	4		4	SH2D3C	9	130509325	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2775146	130509325	10704106	665	147146											
CIZ1	25792	broad.mit.edu	37	chr9	130941545	130941545	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcctggacctgcaggaccCgtggctggaatcgtggcagc	17	12	0	0	rs111464781		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130941545	G	G	130941545	3	3	183	1	0	0	0	0	1	0	0	0	3472	652	23	4	1795	4	CIZ1	9	130941545	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	432220	130941545	10271886	666	147147											
MED27	9442	broad.mit.edu	37	chr9	134814868	134814868	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catcatcaacatatctacatGggaaaaaaataaacatgtgt	5	7	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134814868	C	C	134814868	1	2	183	0	1	0	0	0	0	0	0	0	9538	1363	47	4		4	MED27	9	134814868	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3873323	134814868	6398563	667	147148											
SETX	23064	broad.mit.edu	37	chr9	135206746	135206746	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgaaatgccacaataggatCcataagttgaccccagacct	7	11	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135206746	T	T	135206746	3	4	183	1	0	0	0	0	1	0	0	0	14254	855	30	4	7181	4	SETX	9	135206746	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	391878	135206746	6006685	668	147149											
CEL	1056	broad.mit.edu	37	chr9	135940095	135940095	+	Frame_Shift_Del	DEL	G	-	-													tcacccaggacagcacctacGgggatgaagactgcctgtac							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135940095	-	-	135940095	7	5	183	1	0	1	0	1	0	0	0	0	3239	1116	39	0	305	0	CEL	9	135940095	Frame_Shift_Del	DEL	G	TCGA-64-1676-01A-01W-0928-08	733349	135940095	5273336	669	147150											
KIAA0649	9858	broad.mit.edu	37	chr9	138378101	138378101	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcggccacaagacccctcTctctaaaacaccagacccac	6	19	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138378101	G	G	138378101	3	3	183	1	0	0	0	0	1	0	0	0	8257	1551	54	5	1747	5	KIAA0649	9	138378101	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	2438006	138378101	2835330	670	147151											
MAN1B1	11253	broad.mit.edu	37	chr9	139996768	139996769	+	Intron	INS	-	AC	AC													gcgtgcaggtcggtggtgttINSacacattcacgctgttgcag					rs67165319		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	139996769	AC	AC	139996768	6	5	183	0	1	1	1	0	0	0	0	0	9304	1769	61	0		0	MAN1B1	9	139996768	Intron	INS	-	TCGA-64-1676-01A-01W-0928-08	1618667	139996768	1216663	671	147152											
MAN1B1	11253	broad.mit.edu	37	chr9	139997751	139997752	+	Intron	DEL	TT	-	-													gcgtgcaggtcggtggtacaTtcatgctgttgcaggcgtgc					rs72469431		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139997752	-	-	139997751	6	5	183	0	1	1	0	1	0	0	0	0	9304	1508	52	0		0	MAN1B1	9	139997751	Intron	DEL	TT	TCGA-64-1676-01A-01W-0928-08	983	139997751	1215680	672	147153											
CACNA1B	774	broad.mit.edu	37	chr9	140972591	140972591	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacgggggaggcctggcacGagatcatgctgtcctgcctg	15	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140972591	T	T	140972591	4	4	183	1	0	0	0	0	0	1	0	0	2565	1059	37	3	5113	3	CACNA1B	9	140972591	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	974840	140972591	240840	673	147154											
DIP2C	22982	broad.mit.edu	37	chr10	355909	355909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctagatggagacctgcaTgcaaggccgcagaacaaaac	10	11	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	355909	A	A	355909	1	1	183	0	1	0	0	0	0	0	0	0	4569	1479	51	5		5	DIP2C	10	355909	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08		355909	135178838	674	147155											
RBM17	84991	broad.mit.edu	37	chr10	6157491	6157491	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacaatttggacaaattcaGggtcttggatttggcagaac	10	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6157491	C	C	6157491	3	2	183	1	0	0	0	0	1	0	0	0	13227	1000	35	4	1220	4	RBM17	10	6157491	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	5801582	6157491	129377256	675	147156											
SFMBT2	57713	broad.mit.edu	37	chr10	7285494	7285494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcctgaatctccagacCctgcataccttcacagaata	4	16	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7285494	A	A	7285494	1	1	183	0	1	0	0	0	0	0	0	0	14271	638	22	2		2	SFMBT2	10	7285494	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1128003	7285494	128249253	676	147157											
GATA3	2625	broad.mit.edu	37	chr10	8105983	8105983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgtgtgaactgtggggCaacctcgaccccactgtggc	15	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8105983	A	A	8105983	3	1	183	1	0	0	0	0	1	0	0	0	6317	710	25	3	816	3	GATA3	10	8105983	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	820489	8105983	127428764	677	147158											
DHTKD1	55526	broad.mit.edu	37	chr10	12150040	12150040	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaacgtcttccggagtcaAtgaatcattttcctgcttcc	8	11	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12150040	G	G	12150040	1	3	183	0	1	0	0	0	0	0	0	0	4540	116	4	5		5	DHTKD1	10	12150040	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	4044057	12150040	123384707	678	147159											
ITGA8	8516	broad.mit.edu	37	chr10	15590598	15590598	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtgggaacacgtcagagtCtttaaatcatggtagagact	11	7	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15590598	A	A	15590598	1	1	183	0	1	0	0	0	0	0	0	0	7952	928	32	3		3	ITGA8	10	15590598	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3440558	15590598	119944149	679	147160											
ITGA8	8516	broad.mit.edu	37	chr10	15628598	15628598	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaccctcttatttccaccTgcgctacagcagtgatgttg	7	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15628598	A	A	15628598	3	1	183	1	0	0	0	0	1	0	0	0	7952	1580	55	5	866	5	ITGA8	10	15628598	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	38000	15628598	119906149	680	147161											
ITGA8	8516	broad.mit.edu	37	chr10	15688754	15688754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taataataactgcacccacaCacaccatactgaatacttta	2	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15688754	A	A	15688754	1	1	183	0	1	0	0	0	0	0	0	0	7952	493	17	3		3	ITGA8	10	15688754	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	60156	15688754	119845993	681	147162											
SLC39A12	221074	broad.mit.edu	37	chr10	18276308	18276308	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatccatatccctactGgctgttactgtaagaccaat	5	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18276308	A	A	18276308	1	1	183	0	1	0	0	0	0	0	0	0	14729	1363	47	4		4	SLC39A12	10	18276308	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2587554	18276308	117258439	682	147163											
ARHGAP21	57584	broad.mit.edu	37	chr10	24889599	24889599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtttaggttgctgctctcCtggatcgtcttgatccaagc	10	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24889599	A	A	24889599	3	1	183	1	0	0	0	0	1	0	0	0	873	680	24	2	2820	2	ARHGAP21	10	24889599	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	6613291	24889599	110645148	683	147164											
ANKRD30A	91074	broad.mit.edu	37	chr10	37433905	37433905	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttatcatgaatatatctGtgattaactttttatagatc	5	4	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37433905	A	A	37433905	1	1	183	0	1	0	0	0	0	0	0	0	658	1392	48	4		4	ANKRD30A	10	37433905	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	12544306	37433905	98100842	684	147165											
ANKRD30A	91074	broad.mit.edu	37	chr10	37451815	37451815	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatggaaagaccaatatttCaatattggacattttgatgg	8	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37451815	T	T	37451815	1	4	183	0	1	0	0	0	0	0	0	0	658	841	29	4		4	ANKRD30A	10	37451815	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	17910	37451815	98082932	685	147166											
PPYR1	5540	broad.mit.edu	37	chr10	47087824	47087824	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagagcgcccccctggaGgagtcggagcatctgcccct	13	16	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47087824	A	A	47087824	2	1	183	1	0	0	0	0	0	0	0	1	12517	991	35	4		4	PPYR1	10	47087824	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	9636009	47087824	88446923	686	147167											
CHAT	1103	broad.mit.edu	37	chr10	50873174	50873174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccactcccgtcccttacccCagctttccacagctccctgt	4	22	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50873174	A	A	50873174	1	1	183	0	1	0	0	0	0	0	0	0	3344	609	21	2		2	CHAT	10	50873174	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3785350	50873174	84661573	687	147168											
PARG	8505	broad.mit.edu	37	chr10	51592698	51592698	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatagggttaaataaaaagTactgtgaaatgggctgggca	13	4	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51592698	C	C	51592698	1	2	183	0	1	0	0	0	0	0	0	0	11542	1653	57	5		5	PARG	10	51592698	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	719524	51592698	83942049	688	147169											
EGR2	1959	broad.mit.edu	37	chr10	64575716	64575716	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtcctccaccgggtagAtgttgtcagacagctggtgc	14	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64575716	G	G	64575716	3	3	183	1	0	0	0	0	1	0	0	0	5012	333	12	5	1364	5	EGR2	10	64575716	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	12983018	64575716	70959031	689	147170											
COL13A1	1305	broad.mit.edu	37	chr10	71703963	71703963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgagccaggggcctgggCggccaggagggagaggcatg	20	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71703963	A	A	71703963	1	1	183	0	1	0	0	0	0	0	0	0	3702	783	27	3		3	COL13A1	10	71703963	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	7128247	71703963	63830784	690	147171											
ADAMTS14	140766	broad.mit.edu	37	chr10	72520010	72520011	+	Intron	DNP	GC	AA	AA													ttatagtgggtccagcagggGcaggggtggagggcgggcag							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72520011	AA	AA	72520010	1	1	183	0	1	0	0	0	0	0	0	0	259	1218	42	4		4	ADAMTS14	10	72520010	Intron	DNP	GC	TCGA-64-1676-01A-01W-0928-08	816047	72520010	63014737	691	147172											
CDH23	64072	broad.mit.edu	37	chr10	73330515	73330515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccccaccatcactcaaCctaaggctgtgtgttctctc	7	15	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73330515	A	A	73330515	1	1	183	0	1	0	0	0	0	0	0	0	3138	522	18	3		3	CDH23	10	73330515	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	810505	73330515	62204232	692	147173											
KCNMA1	3778	broad.mit.edu	37	chr10	78799166	78799166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatggggccgagcacacgGgataccctcggcaattgtca	12	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78799166	T	T	78799166	1	4	183	0	1	0	0	0	0	0	0	0	8143	1247	43	2		2	KCNMA1	10	78799166	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	5468651	78799166	56735581	693	147174											
POLR3A	11128	broad.mit.edu	37	chr10	79784770	79784770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagatgtttttcttccggCacttgtcagagattttcttt	9	8	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79784770	A	A	79784770	3	1	183	1	0	0	0	0	1	0	0	0	12323	710	25	3	3835	3	POLR3A	10	79784770	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	985604	79784770	55749977	694	147175											
MAT1A	4143	broad.mit.edu	37	chr10	82034994	82034994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagataagaagcagagccaGcccctagatgctggaggggg	15	9	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82034994	T	T	82034994	1	4	183	0	1	0	0	0	0	0	0	0	9421	986	34	3		3	MAT1A	10	82034994	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2250224	82034994	53499753	695	147176											
LIPN	643418	broad.mit.edu	37	chr10	90534391	90534391	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttaacaggcctaccctaAgaatcttaagagcttgcttc	7	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90534391	T	T	90534391	1	4	183	0	1	0	0	0	0	0	0	0	8902	87	3	5		5	LIPN	10	90534391	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	8499397	90534391	45000356	696	147177											
PAX2	5076	broad.mit.edu	37	chr10	102509514	102509514	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccccagcagggcacgggGgtgtgaaccagctcgggggg	18	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102509514	A	A	102509514	3	1	183	1	0	0	0	0	1	0	0	0	11573	1232	43	4	61	4	PAX2	10	102509514	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	11975123	102509514	33025233	697	147178											
BTRC	8945	broad.mit.edu	37	chr10	103291028	103291028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaacaaacctcctgacGggaatgctcctcccaactct	5	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103291028	T	T	103291028	3	4	183	1	0	0	0	0	1	0	0	0	1579	1116	39	1	804	1	BTRC	10	103291028	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	781514	103291028	32243719	698	147179											
COL17A1	1308	broad.mit.edu	37	chr10	105813757	105813757	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacctgtgaacacacaaggAtatctcagcccctgttttcc	6	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105813757	T	T	105813757	1	4	183	0	1	0	0	0	0	0	0	0	3706	348	12	5		5	COL17A1	10	105813757	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2522729	105813757	29720990	699	147180											
SORCS3	22986	broad.mit.edu	37	chr10	106960961	106960961	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctgggccgagaccactcAggatcagtggtctcagaacc	12	14	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106960961	G	G	106960961	2	3	183	1	0	0	0	0	0	0	0	1	15046	175	7	5		5	SORCS3	10	106960961	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	1147204	106960961	28573786	700	147181											
SORCS1	114815	broad.mit.edu	37	chr10	108337332	108337332	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctaagagaaaacgtgtaaCacttactcatttaatgacac	5	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108337332	G	G	108337332	1	3	183	0	1	0	0	0	0	0	0	0	15044	493	17	4		4	SORCS1	10	108337332	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1376371	108337332	27197415	701	147182											
ATRNL1	26033	broad.mit.edu	37	chr10	116930936	116930936	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atggtcagcagtatgctgtgGagggacattcagcacatatt	12	7	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116930936	A	A	116930936	3	1	183	1	0	0	0	0	1	0	0	0	1211	1175	41	4	1264	4	ATRNL1	10	116930936	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8593604	116930936	18603811	702	147183											
VAX1	11023	broad.mit.edu	37	chr10	118896117	118896117	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcgcgtcctcttaggccGgtccaagtccaggcccttgg	13	15	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118896117	A	A	118896117	3	1	183	1	0	0	0	0	1	0	0	0	17261	1115	39	4	857	4	VAX1	10	118896117	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1965181	118896117	16638630	703	147184											
DMBT1	1755	broad.mit.edu	37	chr10	124337430	124337430	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttccctactccacagagCcctcctgcttctctgcagat	5	19	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124337430	G	G	124337430	1	3	183	0	1	0	0	0	0	0	0	0	4617	754	26	4		4	DMBT1	10	124337430	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5441313	124337430	11197317	704	147185											
CPXM2	119587	broad.mit.edu	37	chr10	125528162	125528162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcctgacacacgaactgCaccagcagcagcagcagctc	8	16	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125528162	A	A	125528162	2	1	183	1	0	0	0	0	0	0	0	1	3870	697	25	3		3	CPXM2	10	125528162	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1190732	125528162	10006585	705	147186											
CTBP2	1488	broad.mit.edu	37	chr10	126694436	126694436	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttcactttcaggggtgcTggcaggatggttatcggaga	14	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126694436	A	A	126694436	1	1	183	0	1	0	0	0	0	0	0	0	4032	1595	55	5		5	CTBP2	10	126694436	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1166274	126694436	8840311	706	147187											
EBF3	253738	broad.mit.edu	37	chr10	131761569	131761569	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcgaacccccgcgcaCcggcaccgcctgcctcccgc	10	23	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131761569	A	A	131761569	1	1	183	0	1	0	0	0	0	0	0	0	4922	522	18	3		3	EBF3	10	131761569	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5067133	131761569	3773178	707	147188											
STK32C	282974	broad.mit.edu	37	chr10	134040330	134040330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgctggccgcgcaggtagtCcagagccagtgccatctcgc	14	14	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134040330	A	A	134040330	3	1	183	1	0	0	0	0	1	0	0	0	15417	855	30	3	883	3	STK32C	10	134040330	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2278761	134040330	1494417	708	147189											
HBE1	3046	broad.mit.edu	37	chr11	5336911	5336911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcagcaaaaaaggagCcgcattgtgtgttcacaagt	12	9	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5336911	A	A	5336911	1	1	183	0	1	0	0	0	0	0	0	0	7046	754	26	3		3	HBE1	11	5336911	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08		5336911	129669605	709	147190											
OR51B2	79345	broad.mit.edu	37	chr11	5345155	5345155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatatctcaaaggattgcGgatggcaatgaaacaatcat	9	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5345155	T	T	5345155	3	4	183	1	0	0	0	0	1	0	0	0	11183	1116	39	1	569	1	OR51B2	11	5345155	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8244	5345155	129661361	710	147191											
OR56A4	120793	broad.mit.edu	37	chr11	6023930	6023930	+	Frame_Shift_Del	DEL	G	-	-													acatctggaggaagcaggctGggaagctgatcgacctgagg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6023930	-	-	6023930	7	5	183	1	0	1	0	1	0	0	0	0	11229	1348	47	0	650	0	OR56A4	11	6023930	Frame_Shift_Del	DEL	G	TCGA-64-1676-01A-01W-0928-08	678775	6023930	128982586	711	147192											
GALNTL4	374378	broad.mit.edu	37	chr11	11454396	11454396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcatctcaggagctgacCcagcccatgtcctggctcca	10	15	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11454396	A	A	11454396	1	1	183	0	1	0	0	0	0	0	0	0	6285	638	22	2		2	GALNTL4	11	11454396	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5430466	11454396	123552120	712	147193											
DKK3	27122	broad.mit.edu	37	chr11	11985955	11985955	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacgcctaaagcacacacCtggggaaataaattagctat	7	12	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11985955	T	T	11985955	1	4	183	0	1	0	0	0	0	0	0	0	4586	696	24	4		4	DKK3	11	11985955	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	531559	11985955	123020561	713	147194											
NELL1	4745	broad.mit.edu	37	chr11	20948973	20948973	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtagatggtgaccattgcagGaactgcacttgcaaagtaag	12	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20948973	C	C	20948973	3	2	183	1	0	0	0	0	1	0	0	0	10428	1165	41	4	909	4	NELL1	11	20948973	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8963018	20948973	114057543	714	147195											
ANO5	203859	broad.mit.edu	37	chr11	22248963	22248963	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggagagtgatattccccGccctaagcacactcctataa	7	12	0	2	rs150652958		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22248963	A	A	22248963	3	1	183	1	0	0	0	0	1	0	0	0	700	1087	38	4	505	4	ANO5	11	22248963	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1299990	22248963	112757553	715	147196											
SLC5A12	159963	broad.mit.edu	37	chr11	26700315	26700315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctaagcagcccactgcaCtgtagtaaaggtaggagatc	10	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26700315	A	A	26700315	3	1	183	1	0	0	0	0	1	0	0	0	14778	565	20	3	345	3	SLC5A12	11	26700315	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4451352	26700315	108306201	716	147197											
BBOX1	8424	broad.mit.edu	37	chr11	27147256	27147256	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaataacgcaactagggacAcaatatttgatgtgcctgtt	8	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27147256	T	T	27147256	3	4	183	1	0	0	0	0	1	0	0	0	1339	159	6	5	914	5	BBOX1	11	27147256	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	446941	27147256	107859260	717	147198											
LGR4	55366	broad.mit.edu	37	chr11	27395083	27395083	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttcaacaaaaaagaaaaaTaagcaaaaacacacctgagg	5	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27395083	A	A	27395083	1	1	183	0	1	0	0	0	0	0	0	0	8828	1421	49	5		5	LGR4	11	27395083	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	247827	27395083	107611433	718	147199											
LMO2	4005	broad.mit.edu	37	chr11	33886333	33886333	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcatgtcagcagggatggGgggatctgcagcacctcatc	14	12	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33886333	A	A	33886333	2	1	183	1	0	0	0	0	0	0	0	1	8926	1219	43	4		4	LMO2	11	33886333	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	6491250	33886333	101120183	719	147200											
LRRC4C	57689	broad.mit.edu	37	chr11	40137020	40137020	+	Frame_Shift_Del	DEL	C	-	-													taatgttagattattgtgtgCcaggttgatctccactagtg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40137020	-	-	40137020	7	5	183	1	0	1	0	1	0	0	0	0	9095	739	26	0	1103	0	LRRC4C	11	40137020	Frame_Shift_Del	DEL	C	TCGA-64-1676-01A-01W-0928-08	6250687	40137020	94869496	720	147201											
TTC17	55761	broad.mit.edu	37	chr11	43411214	43411214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaacagaaacaattagttGctcaaaaaattcacatagaa	4	8	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43411214	T	T	43411214	3	4	183	1	0	0	0	0	1	0	0	0	16810	1319	46	3	272	3	TTC17	11	43411214	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3274194	43411214	91595302	721	147202											
ALKBH3	221120	broad.mit.edu	37	chr11	43921137	43921137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccacctgcacctagtgtGcagaggagatggccgcccct	12	15	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43921137	T	T	43921137	1	4	183	0	1	0	0	0	0	0	0	0	528	1334	46	3		3	ALKBH3	11	43921137	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	509923	43921137	91085379	722	147203											
TRIM48	79097	broad.mit.edu	37	chr11	55038008	55038008	+	3'UTR	DEL	C	-	-													gatgtgaccgtcaaaatccgCcccatatcactgcaacacct							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55038008	-	-	55038008	6	5	183	0	1	1	0	1	0	0	0	0	16648	754	26	0		0	TRIM48	11	55038008	3'UTR	DEL	C	TCGA-64-1676-01A-01W-0928-08	11116871	55038008	79968508	723	147204											
OR4A15	81328	broad.mit.edu	37	chr11	55136164	55136164	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagctttctacacctgtGcatcccacgtcactgtggtc	8	13	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55136164	T	T	55136164	3	4	183	1	0	0	0	0	1	0	0	0	11134	1319	46	3	807	3	OR4A15	11	55136164	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	98156	55136164	79870352	724	147205											
OR4C6	219432	broad.mit.edu	37	chr11	55432926	55432926	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taccatctctctcaaaggctGcctcacccagctgtttgtgg	8	14	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55432926	C	C	55432926	3	2	183	1	0	0	0	0	1	0	0	0	11146	1319	46	4	286	4	OR4C6	11	55432926	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	296762	55432926	79573590	725	147206											
OR4C6	219432	broad.mit.edu	37	chr11	55433526	55433526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgcagaggtgaaaagtgCcatgaagaaactctggatga	13	5	1	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55433526	A	A	55433526	3	1	183	1	0	0	0	0	1	0	0	0	11146	739	26	3	886	3	OR4C6	11	55433526	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	600	55433526	79572990	726	147207											
OR5D16	390144	broad.mit.edu	37	chr11	55607101	55607101	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgttgaatcccctgatcTacagtctgagaaataaagat	7	9	2	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55607101	A	A	55607101	3	1	183	1	0	0	0	0	1	0	0	0	11250	1522	53	5	876	5	OR5D16	11	55607101	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	173575	55607101	79399415	727	147208											
OR10AG1	282770	broad.mit.edu	37	chr11	55735298	55735298	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgacaatttcaaaatgttGgagataattttgccataaga	8	4	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55735298	A	A	55735298	2	1	183	1	0	0	0	0	0	0	0	1	10991	1335	47	4		4	OR10AG1	11	55735298	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	128197	55735298	79271218	728	147209											
OR8K5	219453	broad.mit.edu	37	chr11	55927268	55927268	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacatcatcacagtaaaaatGactgatgacattagagccac	6	9	2	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55927268	T	T	55927268	3	4	183	1	0	0	0	0	1	0	0	0	11339	1290	45	3	400	3	OR8K5	11	55927268	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	191970	55927268	79079248	729	147210											
OR5T3	390154	broad.mit.edu	37	chr11	56020456	56020456	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccattctgaagatgcattctGctaagggaaggcaaaaggcc	11	9	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56020456	C	C	56020456	3	2	183	1	0	0	0	0	1	0	0	0	11277	1319	46	4	783	4	OR5T3	11	56020456	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	93188	56020456	78986060	730	147211											
OR5M1	390168	broad.mit.edu	37	chr11	56380871	56380871	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggttgcctgccagtgtgatTaggtagatcgcaaggaatac	13	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56380871	A	A	56380871	2	1	183	1	0	0	0	0	0	0	0	1	11266	1741	61	5		5	OR5M1	11	56380871	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	360415	56380871	78625645	731	147212											
OR9G4	283189	broad.mit.edu	37	chr11	56511222	56511222	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgaattcagtcaggatGgtgcaatttcccacttccat	8	9	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56511222	T	T	56511222	2	4	183	1	0	0	0	0	0	0	0	1	11345	1335	47	2		2	OR9G4	11	56511222	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	130351	56511222	78495294	732	147213											
SLC43A3	29015	broad.mit.edu	37	chr11	57182358	57182359	+	Intron	INS	-	C	C													ctgctgggaggctctgtgttINScccagctgggacatgcagat							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57182359	C	C	57182358	6	5	183	0	1	1	1	0	0	0	0	0	14748	1798	62	0		0	SLC43A3	11	57182358	Intron	INS	-	TCGA-64-1676-01A-01W-0928-08	671136	57182358	77824158	733	147214											
GLYATL2	219970	broad.mit.edu	37	chr11	58604550	58604550	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgaggtcttgtgtttcttTggtaattccggtataaagag	11	5	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58604550	C	C	58604550	2	2	183	1	0	0	0	0	0	0	0	1	6545	1799	63	5		5	GLYATL2	11	58604550	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	1422192	58604550	76401966	734	147215											
GLYATL2	219970	broad.mit.edu	37	chr11	58605833	58605833	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttatgttgaaaatggcGccatatacctacgatgcaac	7	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58605833	T	T	58605833	2	4	183	1	0	0	0	0	0	0	0	1	6545	1074	38	3		3	GLYATL2	11	58605833	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1283	58605833	76400683	735	147216											
PLAC1L	219990	broad.mit.edu	37	chr11	59807978	59807978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctgtcttgatttggaccGgtgctgagaacctccatggt	12	10	1	2	rs79964989	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59807978	T	T	59807978	3	4	183	1	0	0	0	0	1	0	0	0	12108	1116	39	1	48	1	PLAC1L	11	59807978	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1202145	59807978	75198538	736	147217											
MS4A4A	51338	broad.mit.edu	37	chr11	60064675	60064675	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaccatttttaggttgtGcagattctgactgccctgat	8	10	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60064675	T	T	60064675	2	4	183	1	0	0	0	0	0	0	0	1	9956	1306	46	3		3	MS4A4A	11	60064675	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	256697	60064675	74941841	737	147218											
MS4A1	931	broad.mit.edu	37	chr11	60230080	60230080	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgcggtataggccacaTacagaattcaatccaatttg	8	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60230080	C	C	60230080	1	2	183	0	1	0	0	0	0	0	0	0	9948	1421	49	5		5	MS4A1	11	60230080	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	165405	60230080	74776436	738	147219											
INTS5	80789	broad.mit.edu	37	chr11	62415695	62415695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagcttcagctacttcCtcctcaggatgtagcaggag	11	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62415695	A	A	62415695	3	1	183	1	0	0	0	0	1	0	0	0	7851	680	24	2	1206	2	INTS5	11	62415695	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2185615	62415695	72590821	739	147220											
SLC22A6	9356	broad.mit.edu	37	chr11	62751943	62751943	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggaggcaggactcaggctGcccctgcctgtcccggggca	16	15	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62751943	A	A	62751943	4	1	183	1	0	0	0	0	0	1	0	0	14572	1328	46	4	1511	4	SLC22A6	11	62751943	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	336248	62751943	72254573	740	147221											
SLC22A8	9376	broad.mit.edu	37	chr11	62767039	62767039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctctgaggtcctgagagGgggtggcaccttgaccaagg	17	10	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62767039	T	T	62767039	1	4	183	0	1	0	0	0	0	0	0	0	14574	1247	43	2		2	SLC22A8	11	62767039	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	15096	62767039	72239477	741	147222											
SLC22A25	387601	broad.mit.edu	37	chr11	62951043	62951043	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacccattgagaatgatcgtGaggtgagatgacccataact	10	9	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62951043	T	T	62951043	1	4	183	0	1	0	0	0	0	0	0	0	14568	1305	45	3		3	SLC22A25	11	62951043	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	184004	62951043	72055473	742	147223											
KCNK4	50801	broad.mit.edu	37	chr11	64064883	64064883	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggggcgggagtggggagtAtgggagtggggattgttggt	25	1	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64064883	G	G	64064883	1	3	183	0	1	0	0	0	0	0	0	0	8138	464	16	5		5	KCNK4	11	64064883	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1113840	64064883	70941633	743	147224											
CDC42BPG	55561	broad.mit.edu	37	chr11	64606195	64606195	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccccgcagctcaggaatAtagggggccgtgctgctcgc	15	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64606195	G	G	64606195	2	3	183	1	0	0	0	0	0	0	0	1	3104	456	16	5		5	CDC42BPG	11	64606195	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	541312	64606195	70400321	744	147225											
ACTN3	89	broad.mit.edu	37	chr11	66322052	66322052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtggtgccagaggaagaCagcaccgtaccgcaacgtca	12	12	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66322052	A	A	66322052	3	1	183	1	0	0	0	0	1	0	0	0	206	478	17	3	533	3	ACTN3	11	66322052	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1715857	66322052	68684464	745	147226											
SYT12	91683	broad.mit.edu	37	chr11	66812117	66812117	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctacctccccacagcCgagcgcctcaccgtggtcgt	9	19	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66812117	A	A	66812117	2	1	183	1	0	0	0	0	0	0	0	1	15587	639	23	1		1	SYT12	11	66812117	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	490065	66812117	68194399	746	147227											
PDE2A	5138	broad.mit.edu	37	chr11	72289564	72289564	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtagatcagctcctgaaAggccaacactctcatcacat	6	12	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72289564	T	T	72289564	1	4	183	0	1	0	0	0	0	0	0	0	11730	87	3	5		5	PDE2A	11	72289564	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	5477447	72289564	62716952	747	147228											
PDE2A	5138	broad.mit.edu	37	chr11	72291898	72291898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccagacaccccatggaGggtccccactgtgagcaggg	12	15	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72291898	T	T	72291898	1	4	183	0	1	0	0	0	0	0	0	0	11730	1015	35	2		2	PDE2A	11	72291898	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2334	72291898	62714618	748	147229											
SLCO2B1	11309	broad.mit.edu	37	chr11	74904152	74904152	+	Intron	DEL	G	-	-													gcaatagaattaagtggaatGgggcgggttagaagaaatgg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74904152	-	-	74904152	6	5	183	0	1	1	0	1	0	0	0	0	14841	1363	47	0		0	SLCO2B1	11	74904152	Intron	DEL	G	TCGA-64-1676-01A-01W-0928-08	2612254	74904152	60102364	749	147230											
MYO7A	4647	broad.mit.edu	37	chr11	76909505	76909505	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggctgggcctgggtgtggGaggcctgcctctcagtgcct	18	11	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76909505	T	T	76909505	1	4	183	0	1	0	0	0	0	0	0	0	10176	1189	41	3		3	MYO7A	11	76909505	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2005353	76909505	58097011	750	147231											
PAK1	5058	broad.mit.edu	37	chr11	77051812	77051812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcccacgaggtaactgCaggaatacagataaagggtg	11	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77051812	A	A	77051812	1	1	183	0	1	0	0	0	0	0	0	0	11493	725	25	3		3	PAK1	11	77051812	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	142307	77051812	57954704	751	147232											
KCTD14	65987	broad.mit.edu	37	chr11	77727720	77727720	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacgtcaggtagaacttggaGaataccttgtacccctgggc	11	10	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77727720	A	A	77727720	2	1	183	1	0	0	0	0	0	0	0	1	8171	933	33	4		4	KCTD14	11	77727720	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	675908	77727720	57278796	752	147233											
ODZ4	26011	broad.mit.edu	37	chr11	78369779	78369779	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggcagctggtgattgtgGagccatagagctggtcaaac	15	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78369779	A	A	78369779	3	1	183	1	0	0	0	0	1	0	0	0	10932	1174	41	4	679	4	ODZ4	11	78369779	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	642059	78369779	56636737	753	147234											
ODZ4	26011	broad.mit.edu	37	chr11	78380866	78380866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagctccttcttcactactCgccccatgttatcatactgg	5	15	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78380866	A	A	78380866	3	1	183	1	0	0	0	0	1	0	0	0	10932	884	31	3	1797	3	ODZ4	11	78380866	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	11087	78380866	56625650	754	147235											
C11orf82	220042	broad.mit.edu	37	chr11	82645123	82645123	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagacaaggaaccaataaaGgtttaattaagaagaaatta	7	3	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82645123	T	T	82645123	3	4	183	1	0	0	0	0	1	0	0	0	1677	1000	35	2	2757	2	C11orf82	11	82645123	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4264257	82645123	52361393	755	147236											
CCDC81	60494	broad.mit.edu	37	chr11	86098511	86098511	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatattaaggattattttttCttcactccttcaatgaattc	3	7	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86098511	A	A	86098511	1	1	183	0	1	0	0	0	0	0	0	0	2883	928	32	3		3	CCDC81	11	86098511	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3453388	86098511	48908005	756	147237											
FOLH1B	219595	broad.mit.edu	37	chr11	89429916	89429916	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaggaaatatgactcCcttctgtaatatcacttttt	5	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89429916	G	G	89429916	1	3	183	0	1	0	0	0	0	0	0	0	6038	638	22	4		4	FOLH1B	11	89429916	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3331405	89429916	45576600	757	147238											
FOLH1B	219595	broad.mit.edu	37	chr11	89431572	89431573	+	Intron	INS	-	A	A													aaacagcaaacgattttatcINSaacaggcatgtcatctatgc							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89431573	A	A	89431572	6	5	183	0	1	1	1	0	0	0	0	0	6038	841	29	0		0	FOLH1B	11	89431572	Intron	INS	-	TCGA-64-1676-01A-01W-0928-08	1656	89431572	45574944	758	147239											
NAALAD2	10003	broad.mit.edu	37	chr11	89880732	89880732	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttgcaatccgaccgtttTatgtggattgtaatgtaggg	11	5	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89880732	A	A	89880732	1	1	183	0	1	0	0	0	0	0	0	0	10222	1769	61	5		5	NAALAD2	11	89880732	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	449160	89880732	45125784	759	147240											
FAT3	120114	broad.mit.edu	37	chr11	92620173	92620173	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtccatgaagacaaaggGgttgatgacccgggagaagt	14	7	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92620173	A	A	92620173	2	1	183	1	0	0	0	0	0	0	0	1	5748	1219	43	4		4	FAT3	11	92620173	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	2739441	92620173	42386343	760	147241											
C11orf75	56935	broad.mit.edu	37	chr11	93268815	93268815	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagtgtctgttaagagctaCcgatgggaaaaagaagatca	11	6	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93268815	G	G	93268815	1	3	183	0	1	0	0	0	0	0	0	0	1675	522	18	4		4	C11orf75	11	93268815	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	648642	93268815	41737701	761	147242											
GPR83	10888	broad.mit.edu	37	chr11	94134234	94134234	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctgggactcagcgccgtaGcgcctcctgcccacaaagtt	10	15	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94134234	C	C	94134234	2	2	183	1	0	0	0	0	0	0	0	1	6778	958	34	4		4	GPR83	11	94134234	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	865419	94134234	40872282	762	147243											
PIWIL4	143689	broad.mit.edu	37	chr11	94349640	94349640	+	Intron	DEL	T	-	-													gaagttgaattttacttttaTttttttttttaactttaggt							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94349640	-	-	94349640	6	5	183	0	1	1	0	1	0	0	0	0	12055	1508	52	0		0	PIWIL4	11	94349640	Intron	DEL	T	TCGA-64-1676-01A-01W-0928-08	215406	94349640	40656876	763	147244											
CNTN5	53942	broad.mit.edu	37	chr11	99941253	99941253	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggaaaacccagacccacGtatcgttggctgaagaatgg	11	10	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99941253	T	T	99941253	2	4	183	1	0	0	0	0	0	0	0	1	3676	1132	40	3		3	CNTN5	11	99941253	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	5591613	99941253	35065263	764	147245											
CNTN5	53942	broad.mit.edu	37	chr11	99945012	99945012	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaggagacagagcagtTagagaaaacaaaaggttaga	12	3	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99945012	C	C	99945012	2	2	183	1	0	0	0	0	0	0	0	1	3676	1741	61	5		5	CNTN5	11	99945012	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	3759	99945012	35061504	765	147246											
ANGPTL5	253935	broad.mit.edu	37	chr11	101771329	101771329	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatacactattattttcatTatttgataatataacactca	1	6	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101771329	A	A	101771329	1	1	183	0	1	0	0	0	0	0	0	0	617	1769	61	5		5	ANGPTL5	11	101771329	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1826317	101771329	33235187	766	147247											
DYNC2H1	79659	broad.mit.edu	37	chr11	103128358	103128358	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgggatgcctatctccccCtggctgagagtgccagcaag	12	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103128358	T	T	103128358	2	4	183	1	0	0	0	0	0	0	0	1	4886	680	24	4		4	DYNC2H1	11	103128358	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1357029	103128358	31878158	767	147248											
DDI1	414301	broad.mit.edu	37	chr11	103908255	103908255	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcgatagaagaggccccCgagagttttggacaagtgac	13	8	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103908255	A	A	103908255	2	1	183	1	0	0	0	0	0	0	0	1	4361	639	23	1		1	DDI1	11	103908255	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	779897	103908255	31098261	768	147249											
ALKBH8	91801	broad.mit.edu	37	chr11	107424656	107424661	+	In_Frame_Del	DEL	ACCATG	-	-													aagaaattatttcttctactAccatgagtcctggtggtaag							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107424661	-	-	107424656	7	5	183	1	0	1	0	1	0	0	0	0	533	391	14	0	1614	0	ALKBH8	11	107424656	In_Frame_Del	DEL	ACCATG	TCGA-64-1676-01A-01W-0928-08	3516401	107424656	27581860	769	147250											
NCAM1	4684	broad.mit.edu	37	chr11	113102898	113102898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatttattgcagatgcccCaaagctacagggccctgtgg	11	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113102898	A	A	113102898	3	1	183	1	0	0	0	0	1	0	0	0	10297	594	21	2	1290	2	NCAM1	11	113102898	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5678242	113102898	21903618	770	147251											
TMPRSS5	80975	broad.mit.edu	37	chr11	113566249	113566249	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgtgaagaatgggggagGctggtgggggtggtggacag	24	3	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113566249	A	A	113566249	1	1	183	0	1	0	0	0	0	0	0	0	16373	1218	42	4		4	TMPRSS5	11	113566249	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	463351	113566249	21440267	771	147252											
HTR3B	9177	broad.mit.edu	37	chr11	113816546	113816546	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactttccttgaaggatgagGccatcagcttcaagagaaag	10	8	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113816546	C	C	113816546	1	2	183	0	1	0	0	0	0	0	0	0	7515	1218	42	4		4	HTR3B	11	113816546	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	250297	113816546	21189970	772	147253											
RNF26	79102	broad.mit.edu	37	chr11	119207086	119207086	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgtctaccaccgcaattgCccgctctgccgccggggcat	10	19	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119207086	T	T	119207086	2	4	183	1	0	0	0	0	0	0	0	1	13597	747	26	4		4	RNF26	11	119207086	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	5390540	119207086	15799430	773	147254											
TRIM29	23650	broad.mit.edu	37	chr11	119996441	119996441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgaagttacggctcaggtCcgccttgcacatcttctcaa	8	12	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119996441	A	A	119996441	3	1	183	1	0	0	0	0	1	0	0	0	16627	855	30	3	499	3	TRIM29	11	119996441	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	789355	119996441	15010075	774	147255											
TECTA	7007	broad.mit.edu	37	chr11	120976489	120976489	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggagagatgtagattgCcaaacggcagagggagctgc	17	6	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120976489	G	G	120976489	1	3	183	0	1	0	0	0	0	0	0	0	15869	754	26	4		4	TECTA	11	120976489	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	980048	120976489	14030027	775	147256											
OR8D4	338662	broad.mit.edu	37	chr11	123777159	123777159	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggtgtaaaaaaccattcCacagtgactgagtttcttct	8	8	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123777159	T	T	123777159	2	4	183	1	0	0	0	0	0	0	0	1	11327	581	21	4		4	OR8D4	11	123777159	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	2800670	123777159	11229357	776	147257											
OR4D5	219875	broad.mit.edu	37	chr11	123811224	123811224	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcatggccatgaagaagCtgtggaggaggaaaaaggac	15	5	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123811224	T	T	123811224	2	4	183	1	0	0	0	0	0	0	0	1	11151	796	28	4		4	OR4D5	11	123811224	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	34065	123811224	11195292	777	147258											
OR10S1	219873	broad.mit.edu	37	chr11	123848164	123848164	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggcatccaggaaggagaGgtgccccaggaagtggtaca	15	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123848164	A	A	123848164	3	1	183	1	0	0	0	0	1	0	0	0	11012	1000	35	4	764	4	OR10S1	11	123848164	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	36940	123848164	11158352	778	147259											
OR10G8	219869	broad.mit.edu	37	chr11	123900209	123900209	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagtccacaataactccaGaattatctacctgcttgatg	5	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123900209	T	T	123900209	1	4	183	0	1	0	0	0	0	0	0	0	10997	957	33	3		3	OR10G8	11	123900209	5'Flank	SNP	G	TCGA-64-1676-01A-01W-0928-08	52045	123900209	11106307	779	147260											
OR10G8	219869	broad.mit.edu	37	chr11	123900722	123900722	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagttacccgctcaggtaCaccagcatgatgactgggcg	11	12	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123900722	A	A	123900722	4	1	183	1	0	0	0	0	0	1	0	0	10997	489	17	3	395	3	OR10G8	11	123900722	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	513	123900722	11105794	780	147261											
PANX3	116337	broad.mit.edu	37	chr11	124489566	124489566	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaacgacttttatctgtctAtgagatgctcccagcttttg	7	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124489566	G	G	124489566	3	3	183	1	0	0	0	0	1	0	0	0	11516	449	16	5	928	5	PANX3	11	124489566	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	588844	124489566	10516950	781	147262											
ROBO4	54538	broad.mit.edu	37	chr11	124754957	124754957	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagccttgggcatacgaCagtggagctgacttctctgg	12	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124754957	T	T	124754957	3	4	183	1	0	0	0	0	1	0	0	0	13627	478	17	4	50	4	ROBO4	11	124754957	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	265391	124754957	10251559	782	147263											
PKNOX2	63876	broad.mit.edu	37	chr11	125301253	125301253	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcagacgacaaatgtcagcGacctgggcttggaacacagt	12	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125301253	T	T	125301253	3	4	183	1	0	0	0	0	1	0	0	0	12078	1058	37	3	1422	3	PKNOX2	11	125301253	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	546296	125301253	9705263	783	147264											
STT3A	3703	broad.mit.edu	37	chr11	125482978	125482978	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaggcctactcttctccgtCcattgtactatctgcccgtg	8	14	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125482978	G	G	125482978	3	3	183	1	0	0	0	0	1	0	0	0	15451	855	30	4	1506	4	STT3A	11	125482978	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	181725	125482978	9523538	784	147265											
PATE1	160065	broad.mit.edu	37	chr11	125617385	125617385	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcctccacctttctttcCcctcccatttttcaggctaa	2	16	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125617385	A	A	125617385	1	1	183	0	1	0	0	0	0	0	0	0	11567	638	22	2		2	PATE1	11	125617385	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	134407	125617385	9389131	785	147266											
ERC1	23085	broad.mit.edu	37	chr12	1519478	1519478	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacattatgcttatgtctttGttttaaatactaaccacctc	3	9	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1519478	C	C	1519478	1	2	183	0	1	0	0	0	0	0	0	0	5252	1392	48	4		4	ERC1	12	1519478	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08		1519478	132332417	786	147267											
CACNA2D4	93589	broad.mit.edu	37	chr12	1969334	1969334	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggggtgtcgctgatgtcCgtgaagaagtagtcattggt	15	5	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1969334	G	G	1969334	2	3	183	1	0	0	0	0	0	0	0	1	2577	639	23	4		4	CACNA2D4	12	1969334	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	449856	1969334	131882561	787	147268											
FOXM1	2305	broad.mit.edu	37	chr12	2975520	2975521	+	Intron	DNP	CC	AA	AA													tgagatggctatgacaacctCcaacttaggccctatttaga							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2975521	AA	AA	2975520	1	1	183	0	1	0	0	0	0	0	0	0	6078	870	30	3		3	FOXM1	12	2975520	Intron	DNP	CC	TCGA-64-1676-01A-01W-0928-08	1006186	2975520	130876375	788	147269											
CD163L1	283316	broad.mit.edu	37	chr12	7559189	7559189	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattgacggttccggaatgTctgcagtcccaaagaaaaga	10	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7559189	C	C	7559189	2	2	183	1	0	0	0	0	0	0	0	1	2998	1664	58	5		5	CD163L1	12	7559189	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	4583669	7559189	126292706	789	147270											
SLC2A3	6515	broad.mit.edu	37	chr12	8075422	8075422	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtttacttacagcagCggaggggaagagcaatccga	15	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8075422	A	A	8075422	3	1	183	1	0	0	0	0	1	0	0	0	14659	768	27	3	231	3	SLC2A3	12	8075422	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	516233	8075422	125776473	790	147271											
CLEC4D	338339	broad.mit.edu	37	chr12	8665071	8665071	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttgacaccgcatatacaCctggcttaaagttattgact	8	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8665071	T	T	8665071	1	4	183	0	1	0	0	0	0	0	0	0	3546	522	18	4		4	CLEC4D	12	8665071	5'Flank	SNP	C	TCGA-64-1676-01A-01W-0928-08	589649	8665071	125186824	791	147272											
A2M	2	broad.mit.edu	37	chr12	9225296	9225296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactttcatgctgtattcccCaggcagctctggcaatgaga	9	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9225296	A	A	9225296	3	1	183	1	0	0	0	0	1	0	0	0	4	594	21	2	524	2	A2M	12	9225296	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	560225	9225296	124626599	792	147273											
A2M	2	broad.mit.edu	37	chr12	9265181	9265181	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattcagcacccgcaggtctCctcccctatttgctgttgca	7	16	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9265181	A	A	9265181	1	1	183	0	1	0	0	0	0	0	0	0	4	870	30	3		3	A2M	12	9265181	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	39885	9265181	124586714	793	147274											
PZP	5858	broad.mit.edu	37	chr12	9302192	9302192	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgatatactcagcaaccacaGactcatctgaaagataacgt	6	11	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9302192	T	T	9302192	3	4	183	1	0	0	0	0	1	0	0	0	12977	942	33	3	65	3	PZP	12	9302192	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	37011	9302192	124549703	794	147275											
MANSC1	54682	broad.mit.edu	37	chr12	12491436	12491436	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacagaaaaataggtagcaGttgggttgtctagctgtttt	13	4	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12491436	A	A	12491436	2	1	183	1	0	0	0	0	0	0	0	1	9316	1020	36	4		4	MANSC1	12	12491436	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3189244	12491436	121360459	795	147276											
PIK3C2G	5288	broad.mit.edu	37	chr12	18499667	18499667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgcagattttcagcctGtaaatgtacctagatgcact	7	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18499667	T	T	18499667	3	4	183	1	0	0	0	0	1	0	0	0	12006	1377	48	3	1560	3	PIK3C2G	12	18499667	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6008231	18499667	115352228	796	147277											
PDE3A	5139	broad.mit.edu	37	chr12	20704818	20704818	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcccgtccaaccactacGgacccatcccggggatcccc	7	20	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20704818	A	A	20704818	1	1	183	0	1	0	0	0	0	0	0	0	11731	1131	39	4		4	PDE3A	12	20704818	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2205151	20704818	113147077	797	147278											
PDE3A	5139	broad.mit.edu	37	chr12	20801732	20801733	+	Nonsense_Mutation	DNP	GG	TT	TT													ttaattaaccttgaccatgtGgaatttaagcatttccgttt							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	20801733	TT	TT	20801732	4	4	183	1	0	0	0	0	0	1	0	0	11731	1335	47	2	2726	2	PDE3A	12	20801732	Nonsense_Mutation	DNP	GG	TCGA-64-1676-01A-01W-0928-08	96914	20801732	113050163	798	147279											
SLCO1B3	28234	broad.mit.edu	37	chr12	21196581	21196581	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggagtgatgagtattccgaAatataaaccatactcaactc	8	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21196581	T	T	21196581	1	4	183	0	1	0	0	0	0	0	0	0	14838	29	1	5		5	SLCO1B3	12	21196581	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	394849	21196581	112655314	799	147280											
SLCO1B1	10599	broad.mit.edu	37	chr12	21355423	21355423	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttttttcttttttttctAggagtcataaccatacctat	3	8	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21355423	C	C	21355423	5	2	183	1	0	0	0	0	0	0	1	0	14837	434	15	5	1168	5	SLCO1B1	12	21355423	Splice_Site	SNP	A	TCGA-64-1676-01A-01W-0928-08	158842	21355423	112496472	800	147281											
SLCO1A2	6579	broad.mit.edu	37	chr12	21454051	21454051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattatatatgataacataCctgagatgctttgtatagtc	7	5	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21454051	A	A	21454051	1	1	183	0	1	0	0	0	0	0	0	0	14836	522	18	3		3	SLCO1A2	12	21454051	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	98628	21454051	112397844	801	147282											
ST8SIA1	6489	broad.mit.edu	37	chr12	22486883	22486883	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaccctgtcctctgcactCggggaggaaaggacgctaga	14	11	1	2	rs113220991	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22486883	A	A	22486883	1	1	183	0	1	0	0	0	0	0	0	0	15349	899	31	3		3	ST8SIA1	12	22486883	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1032832	22486883	111365012	802	147283											
KIAA0528	9847	broad.mit.edu	37	chr12	22659606	22659606	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaattttaataaccacaaTttaaataaaggaaacattga	3	5	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22659606	C	C	22659606	1	2	183	0	1	0	0	0	0	0	0	0	8252	1508	52	5		5	KIAA0528	12	22659606	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	172723	22659606	111192289	803	147284											
CASC1	55259	broad.mit.edu	37	chr12	25261485	25261485	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgtaagtggaggttaGgagtagctgagcaatctggt	15	4	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25261485	T	T	25261485	2	4	183	1	0	0	0	0	0	0	0	1	2686	987	35	2		2	CASC1	12	25261485	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	2601879	25261485	108590410	804	147285											
CNTN1	1272	broad.mit.edu	37	chr12	41422935	41422935	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaacactccatagaagtccCaatccccagagatggagaat	7	12	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41422935	G	G	41422935	3	3	183	1	0	0	0	0	1	0	0	0	3672	594	21	4	2980	4	CNTN1	12	41422935	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	16161450	41422935	92428960	805	147286											
ADAMTS20	80070	broad.mit.edu	37	chr12	43925996	43925996	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtcctttaaatgttccCgtctgaaaataaaggaaaca	6	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43925996	A	A	43925996	2	1	183	1	0	0	0	0	0	0	0	1	266	639	23	1		1	ADAMTS20	12	43925996	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	2503061	43925996	89925899	806	147287											
WNT1	7471	broad.mit.edu	37	chr12	49374219	49374219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacaggctgtcgagaaaCggcgtttatcttcgctatca	9	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49374219	A	A	49374219	3	1	183	1	0	0	0	0	1	0	0	0	17508	536	19	3	381	3	WNT1	12	49374219	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5448223	49374219	84477676	807	147288											
MLL2	8085	broad.mit.edu	37	chr12	49432243	49432243	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtgctcgacgggggccGgttgaccagctccaaaccag	13	14	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49432243	A	A	49432243	3	1	183	1	0	0	0	0	1	0	0	0	9714	1115	39	4	7801	4	MLL2	12	49432243	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	58024	49432243	84419652	808	147289											
KCNH3	23416	broad.mit.edu	37	chr12	49949578	49949578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccaagctgctatccccacGtcgaacagcaccccggcctc	8	19	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49949578	A	A	49949578	3	1	183	1	0	0	0	0	1	0	0	0	8103	1145	40	4	2358	4	KCNH3	12	49949578	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	517335	49949578	83902317	809	147290											
FMNL3	91010	broad.mit.edu	37	chr12	50045837	50045837	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagggtggcatgccctcactCagctctgcagggcctactct	12	14	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50045837	G	G	50045837	2	3	183	1	0	0	0	0	0	0	0	1	6011	813	29	4		4	FMNL3	12	50045837	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	96259	50045837	83806058	810	147291											
ACCN2	41	broad.mit.edu	37	chr12	50472204	50472204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccggctctcccagcagCtcatctacctgcccccaccc	5	24	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50472204	A	A	50472204	3	1	183	1	0	0	0	0	1	0	0	0	129	811	28	3	856	3	ACCN2	12	50472204	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	426367	50472204	83379691	811	147292											
SLC4A8	9498	broad.mit.edu	37	chr12	51879644	51879644	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gattattgattttttgattgGagtcccatcaccaaagcttc	7	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51879644	C	C	51879644	3	2	183	1	0	0	0	0	1	0	0	0	14773	1174	41	4	2312	4	SLC4A8	12	51879644	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1407440	51879644	81972251	812	147293											
KRT83	3889	broad.mit.edu	37	chr12	52710627	52710627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgtctagcaggcaggtGtcctgtgccgctcaccttgc	12	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52710627	T	T	52710627	1	4	183	0	1	0	0	0	0	0	0	0	8568	1392	48	3		3	KRT83	12	52710627	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	830983	52710627	81141268	813	147294											
KRT76	51350	broad.mit.edu	37	chr12	53167222	53167222	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcttccttcatgaaacaTttcatttccaaaaatgtaag	5	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53167222	C	C	53167222	1	2	183	0	1	0	0	0	0	0	0	0	8560	1508	52	5		5	KRT76	12	53167222	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	456595	53167222	80684673	814	147295											
HOXC6	3223	broad.mit.edu	37	chr12	54423739	54423739	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagaagaggagaagcagaAagagtgaccaggactgtccc	14	8	0	6			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54423739	C	C	54423739	3	2	183	1	0	0	0	0	1	0	0	0	7382	14	1	5	707	5	HOXC6	12	54423739	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	1256517	54423739	79428156	815	147296											
RPL41	6171	broad.mit.edu	37	chr12	56510626	56510626	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgggaggtaggagttggcGagtagtagcgaggagacgaa	19	4	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56510626	T	T	56510626	1	4	183	0	1	0	0	0	0	0	0	0	13707	1073	37	3		3	RPL41	12	56510626	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2086887	56510626	77341269	816	147297											
STAT2	6773	broad.mit.edu	37	chr12	56748662	56748662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccctggatggtgggaaCaggagtcagtccaggggttc	15	9	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56748662	A	A	56748662	1	1	183	0	1	0	0	0	0	0	0	0	15383	493	17	3		3	STAT2	12	56748662	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	238036	56748662	77103233	817	147298											
XRCC6BP1	91419	broad.mit.edu	37	chr12	58345406	58345406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgggtagatgtgtggccaAtgaagaagagtgggtagaga	17	3	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58345406	T	T	58345406	1	4	183	0	1	0	0	0	0	0	0	0	17585	116	4	5		5	XRCC6BP1	12	58345406	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1596744	58345406	75506489	818	147299											
SLC16A7	9194	broad.mit.edu	37	chr12	60098636	60098636	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacctccagatggaggatgGggttggattgtggttggagc	17	7	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60098636	C	C	60098636	3	2	183	1	0	0	0	0	1	0	0	0	14526	1241	43	4	56	4	SLC16A7	12	60098636	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1753230	60098636	73753259	819	147300											
FAM19A2	338811	broad.mit.edu	37	chr12	62260995	62260995	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaactgccagggggagaatCtatacctagtaaaatttaac	8	7	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62260995	A	A	62260995	1	1	183	0	1	0	0	0	0	0	0	0	5579	928	32	3		3	FAM19A2	12	62260995	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2162359	62260995	71590900	820	147301											
GRIP1	23426	broad.mit.edu	37	chr12	66957418	66957418	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaagcttatttcatgaagAtggaagatgttgggtttatg	12	3	1	3	rs150871747	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66957418	T	T	66957418	1	4	183	0	1	0	0	0	0	0	0	0	6853	348	12	5		5	GRIP1	12	66957418	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	4696423	66957418	66894477	821	147302											
PTPRB	5787	broad.mit.edu	37	chr12	70951642	70951642	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatgctatagttgtcctctGaggagacaggacagggtcct	12	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70951642	C	C	70951642	1	2	183	0	1	0	0	0	0	0	0	0	12904	1305	45	4		4	PTPRB	12	70951642	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3994224	70951642	62900253	822	147303											
PTPRR	5801	broad.mit.edu	37	chr12	71094883	71094883	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccatgtatcaaaatacCgactgaagagtgaacaataa	7	9	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71094883	A	A	71094883	1	1	183	0	1	0	0	0	0	0	0	0	12918	667	23	1		1	PTPRR	12	71094883	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	143241	71094883	62757012	823	147304											
ZFC3H1	196441	broad.mit.edu	37	chr12	72027129	72027129	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctgtaagttttgtaatcTttgcttcagcatttctaaca	6	7	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72027129	C	C	72027129	3	2	183	1	0	0	0	0	1	0	0	0	17759	1609	56	5	3461	5	ZFC3H1	12	72027129	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	932246	72027129	61824766	824	147305											
TPH2	121278	broad.mit.edu	37	chr12	72366519	72366519	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatttcacacaggctgtctCttattagtcaatatcctcaa	5	10	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72366519	T	T	72366519	1	4	183	0	1	0	0	0	0	0	0	0	16526	928	32	4		4	TPH2	12	72366519	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	339390	72366519	61485376	825	147306											
CAPS2	84698	broad.mit.edu	37	chr12	75678809	75678809	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgtttgaattctccataatCaaccttgccattgccattgt	5	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75678809	A	A	75678809	3	1	183	1	0	0	0	0	1	0	0	0	2664	826	29	3	181	3	CAPS2	12	75678809	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3312290	75678809	58173086	826	147307											
PPFIA2	8499	broad.mit.edu	37	chr12	81676789	81676789	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcatatgaatctcctacCtgggcccagcttccttcctc	6	15	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81676789	A	A	81676789	3	1	183	1	0	0	0	0	1	0	0	0	12406	695	24	2	783	2	PPFIA2	12	81676789	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5997980	81676789	52175106	827	147308											
C12orf26	84190	broad.mit.edu	37	chr12	82871004	82871004	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acataagtttaaggaaataaGctagtcttttttttttaagt	6	3	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82871004	A	A	82871004	1	1	183	0	1	0	0	0	0	0	0	0	1692	986	34	4		4	C12orf26	12	82871004	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1194215	82871004	50980891	828	147309											
C12orf12	196477	broad.mit.edu	37	chr12	91347339	91347339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaacagggattcctgtGgcactttgggaattatctgc	11	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91347339	A	A	91347339	3	1	183	1	0	0	0	0	1	0	0	0	1689	1348	47	4	43	4	C12orf12	12	91347339	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8476335	91347339	42504556	829	147310											
CKAP4	10970	broad.mit.edu	37	chr12	106633401	106633401	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccagtccctgactcttttGctggagtgcctcaaaggctt	10	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106633401	C	C	106633401	3	2	183	1	0	0	0	0	1	0	0	0	3475	1328	46	4	602	4	CKAP4	12	106633401	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	15286062	106633401	27218494	830	147311											
BTBD11	121551	broad.mit.edu	37	chr12	108042981	108042981	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttctctgtgttttcttccAgctggttatgcagtatctct	8	9	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108042981	T	T	108042981	5	4	183	1	0	0	0	0	0	0	1	0	1548	202	7	5	3084	5	BTBD11	12	108042981	Splice_Site	SNP	A	TCGA-64-1676-01A-01W-0928-08	1409580	108042981	25808914	831	147312											
TRPV4	59341	broad.mit.edu	37	chr12	110232179	110232179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtgagagtgaagatgacCatggcacacaggtaggagac	16	7	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110232179	A	A	110232179	3	1	183	1	0	0	0	0	1	0	0	0	16723	594	21	2	1205	2	TRPV4	12	110232179	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2189198	110232179	23619716	832	147313											
ATXN2	6311	broad.mit.edu	37	chr12	111922960	111922960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaaagccaatgcatagcCtcatcaaaaagtcagagcta	6	10	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111922960	A	A	111922960	1	1	183	0	1	0	0	0	0	0	0	0	1215	696	24	2		2	ATXN2	12	111922960	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1690781	111922960	21928935	833	147314											
ALDH2	217	broad.mit.edu	37	chr12	112235926	112235926	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctcggctacatcaacacGgggaagcaagagggggcgaa	14	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112235926	T	T	112235926	2	4	183	1	0	0	0	0	0	0	0	1	496	1103	39	1		1	ALDH2	12	112235926	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	312966	112235926	21615969	834	147315											
DTX1	1840	broad.mit.edu	37	chr12	113515246	113515246	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcaccatgcggcccgtgCggcgcaacttctacgacccg	12	17	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113515246	A	A	113515246	2	1	183	1	0	0	0	0	0	0	0	1	4833	759	27	3		3	DTX1	12	113515246	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1279320	113515246	20336649	835	147316											
GCN1L1	10985	broad.mit.edu	37	chr12	120586188	120586188	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcccagtactgaatcactGagcaaaggccagcaactcac	8	13	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120586188	A	A	120586188	1	1	183	0	1	0	0	0	0	0	0	0	6361	1305	45	4		4	GCN1L1	12	120586188	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	7070942	120586188	13265707	836	147317											
KDM2B	84678	broad.mit.edu	37	chr12	121882033	121882033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccttgagcagggagcCgggcaggttggaggcgtact	17	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121882033	A	A	121882033	3	1	183	1	0	0	0	0	1	0	0	0	8195	652	23	1	1861	1	KDM2B	12	121882033	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1295845	121882033	11969862	837	147318											
ABCB9	23457	broad.mit.edu	37	chr12	123434340	123434340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggaaggaccaacctgtgCggttctcatcaaagaagctt	10	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123434340	A	A	123434340	3	1	183	1	0	0	0	0	1	0	0	0	48	768	27	3	1494	3	ABCB9	12	123434340	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1552307	123434340	10417555	838	147319											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124241308	124241308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtccaggtagctcacagaGggacccactgtacataagcg	11	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124241308	T	T	124241308	1	4	183	0	1	0	0	0	0	0	0	0	1173	1015	35	2		2	ATP6V0A2	12	124241308	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	806968	124241308	9610587	839	147320											
DNAH10	196385	broad.mit.edu	37	chr12	124364246	124364246	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtggaggtggtgatgagGgatcccatattgtttggaga	17	4	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124364246	A	A	124364246	2	1	183	1	0	0	0	0	0	0	0	1	4638	1223	43	4		4	DNAH10	12	124364246	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	122938	124364246	9487649	840	147321											
TMEM132D	121256	broad.mit.edu	37	chr12	129563130	129563130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcagtggcaaagatggcCctgttgcttcctgggctgag	14	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129563130	A	A	129563130	3	1	183	1	0	0	0	0	1	0	0	0	16170	622	22	2	1243	2	TMEM132D	12	129563130	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5198884	129563130	4288765	841	147322											
TMEM132D	121256	broad.mit.edu	37	chr12	129694237	129694237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaacacacccttccatcaCatcccctcctgagacggccc	4	21	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129694237	A	A	129694237	1	1	183	0	1	0	0	0	0	0	0	0	16170	493	17	3		3	TMEM132D	12	129694237	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	131107	129694237	4157658	842	147323											
POLE	5426	broad.mit.edu	37	chr12	133245353	133245353	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagaaagcacttagggctGggcagagagagctccgactc	15	9	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133245353	A	A	133245353	1	1	183	0	1	0	0	0	0	0	0	0	12291	1363	47	4		4	POLE	12	133245353	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3551116	133245353	606542	843	147324											
TPTE2	93492	broad.mit.edu	37	chr13	20137797	20137797	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaagctctcgtacttcatCatcttggacgtcttccgctc	7	13	5	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20137797	A	A	20137797	1	1	183	0	1	0	0	0	0	0	0	0	16555	841	29	3		3	TPTE2	13	20137797	5'Flank	SNP	C	TCGA-64-1676-01A-01W-0928-08		20137797	95032081	844	147325											
FAM123A	219287	broad.mit.edu	37	chr13	25744474	25744474	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtgtcgtccacctcgtcCgggctggccatctcttcccc	10	17	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25744474	A	A	25744474	2	1	183	1	0	0	0	0	0	0	0	1	5468	639	23	1		1	FAM123A	13	25744474	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	5606677	25744474	89425404	845	147326											
FLT3	2322	broad.mit.edu	37	chr13	28636255	28636255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaaaactgcaggtctaaGgcctccccttcttcacatca	6	14	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28636255	T	T	28636255	1	4	183	0	1	0	0	0	0	0	0	0	6000	1015	35	2		2	FLT3	13	28636255	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2891781	28636255	86533623	846	147327											
PAN3	255967	broad.mit.edu	37	chr13	28866674	28866674	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagtatttgctaaaaaaGcacgcaggacatggctaaag	10	6	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28866674	T	T	28866674	1	4	183	0	1	0	0	0	0	0	0	0	11509	986	34	3		3	PAN3	13	28866674	3'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	230419	28866674	86303204	847	147328											
MTUS2	23281	broad.mit.edu	37	chr13	29881603	29881603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaatgggaagctcactgGcatggccttctgtgtcccca	12	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29881603	T	T	29881603	1	4	183	0	1	0	0	0	0	0	0	0	10060	1218	42	3		3	MTUS2	13	29881603	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1014929	29881603	85288275	848	147329											
NBEA	26960	broad.mit.edu	37	chr13	35756431	35756431	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agataataaaatagcagtttCtagtgctttaagaacttata	6	4	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35756431	T	T	35756431	1	4	183	0	1	0	0	0	0	0	0	0	10281	928	32	4		4	NBEA	13	35756431	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5874828	35756431	79413447	849	147330											
TRPC4	7223	broad.mit.edu	37	chr13	38237446	38237446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcattaagcacaattttaGttccccattttctttacaac	3	11	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38237446	T	T	38237446	1	4	183	0	1	0	0	0	0	0	0	0	16705	1044	36	3		3	TRPC4	13	38237446	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2481015	38237446	76932432	850	147331											
EPSTI1	94240	broad.mit.edu	37	chr13	43469133	43469133	+	Intron	DEL	G	-	-													aaagatgatttaagagaaaaGaaaaaactcacccagctgtt							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43469133	-	-	43469133	6	5	183	0	1	1	0	1	0	0	0	0	5240	957	33	0		0	EPSTI1	13	43469133	Intron	DEL	G	TCGA-64-1676-01A-01W-0928-08	5231687	43469133	71700745	851	147332											
ESD	2098	broad.mit.edu	37	chr13	47355625	47355625	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcactagaagtttagataaTcttactttgtattttccagg	6	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47355625	C	C	47355625	1	2	183	0	1	0	0	0	0	0	0	0	5292	1450	50	5		5	ESD	13	47355625	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	3886492	47355625	67814253	852	147333											
RCBTB2	1102	broad.mit.edu	37	chr13	49076887	49076887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggcgccacgtgacggCgggcgtggcaaagcaggcaa	19	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49076887	A	A	49076887	3	1	183	1	0	0	0	0	1	0	0	0	13280	768	27	3	585	3	RCBTB2	13	49076887	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1721262	49076887	66092991	853	147334											
VPS36	51028	broad.mit.edu	37	chr13	53024666	53024666	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgtagattcgcaccccgcGctgctggatcaccagggtct	11	14	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53024666	A	A	53024666	3	1	183	1	0	0	0	0	1	0	0	0	17331	1087	38	4	1152	4	VPS36	13	53024666	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3947779	53024666	62145212	854	147335											
HNRNPA1L2	144983	broad.mit.edu	37	chr13	53217055	53217055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgactgaccgaggcagtgGcaagaaaaggggctttgcct	14	9	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53217055	T	T	53217055	3	4	183	1	0	0	0	0	1	0	0	0	7325	1203	42	3	430	3	HNRNPA1L2	13	53217055	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	192389	53217055	61952823	855	147336											
PCDH20	64881	broad.mit.edu	37	chr13	61987564	61987564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccagtcgggtgtttacaGgtgcattttccgggacccac	13	11	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61987564	T	T	61987564	3	4	183	1	0	0	0	0	1	0	0	0	11609	1000	35	2	2191	2	PCDH20	13	61987564	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8770509	61987564	53182314	856	147337											
KLHL1	57626	broad.mit.edu	37	chr13	70413071	70413071	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctgcaacacggtataacAcaggatgtatagttatataa	8	6	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70413071	G	G	70413071	1	3	183	0	1	0	0	0	0	0	0	0	8436	174	6	5		5	KLHL1	13	70413071	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	8425507	70413071	44756807	857	147338											
DACH1	1602	broad.mit.edu	37	chr13	72420455	72420455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcaaagatttagactaaCgaaaagtaaataaataaaag	5	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72420455	A	A	72420455	1	1	183	0	1	0	0	0	0	0	0	0	4253	551	19	3		3	DACH1	13	72420455	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2007384	72420455	42749423	858	147339											
SLITRK5	26050	broad.mit.edu	37	chr13	88329238	88329238	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcttgaccctcctcaGgctaaacctgaggagtaacc	9	14	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88329238	T	T	88329238	3	4	183	1	0	0	0	0	1	0	0	0	14860	1000	35	2	1597	2	SLITRK5	13	88329238	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	15908783	88329238	26840640	859	147340											
DOCK9	23348	broad.mit.edu	37	chr13	99520151	99520151	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagaaaggctacatggtgaCttctgttaccagtaacaacc	9	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99520151	G	G	99520151	1	3	183	0	1	0	0	0	0	0	0	0	4734	580	20	4		4	DOCK9	13	99520151	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	11190913	99520151	15649727	860	147341											
DOCK9	23348	broad.mit.edu	37	chr13	99520213	99520213	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggagcaaaacagctaatgTagttgttgatctgcttgaag	11	6	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99520213	C	C	99520213	3	2	183	1	0	0	0	0	1	0	0	0	4734	1638	57	5	3236	5	DOCK9	13	99520213	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	62	99520213	15649665	861	147342											
FGF14	2259	broad.mit.edu	37	chr13	102378993	102378993	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtagaaaatgagctgcTggtttggttttctttactct	11	5	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102378993	G	G	102378993	2	3	183	1	0	0	0	0	0	0	0	1	5900	1567	55	5		5	FGF14	13	102378993	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	2858780	102378993	12790885	862	147343											
COL4A1	1282	broad.mit.edu	37	chr13	110863998	110863998	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaataaaatgtaccttcAtccctggtaagcctggtggt	8	8	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110863998	T	T	110863998	3	4	183	1	0	0	0	0	1	0	0	0	3721	217	8	5	4725	5	COL4A1	13	110863998	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	8485005	110863998	4305880	863	147344											
ATP11A	23250	broad.mit.edu	37	chr13	113479731	113479731	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaccagtgatcacctctgtCcttttgttttagatcgatga	9	9	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113479731	T	T	113479731	1	4	183	0	1	0	0	0	0	0	0	0	1123	870	30	4		4	ATP11A	13	113479731	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2615733	113479731	1690147	864	147345											
OR4K14	122740	broad.mit.edu	37	chr14	20483031	20483031	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatctcagccccaccagTaaagtgcaagaagaagattt	7	12	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20483031	C	C	20483031	3	2	183	1	0	0	0	0	1	0	0	0	11163	1638	57	5	613	5	OR4K14	14	20483031	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08		20483031	86866509	865	147346											
OR6S1	341799	broad.mit.edu	37	chr14	21108972	21108972	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgctcattacgtaaggcAtagatgaatggattcaacag	9	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21108972	G	G	21108972	2	3	183	1	0	0	0	0	0	0	0	1	11303	224	8	5		5	OR6S1	14	21108972	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	625941	21108972	86240568	866	147347											
MYH6	4624	broad.mit.edu	37	chr14	23862516	23862516	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttgcctgcaaaatcttGctctgagagcaggagcatgg	14	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23862516	T	T	23862516	1	4	183	0	1	0	0	0	0	0	0	0	10132	1334	46	3		3	MYH6	14	23862516	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2753544	23862516	83487024	867	147348											
MYH6	4624	broad.mit.edu	37	chr14	23866764	23866764	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttacccggtggagagcCgacaccgtctggaaggatga	13	11	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23866764	A	A	23866764	2	1	183	1	0	0	0	0	0	0	0	1	10132	639	23	1		1	MYH6	14	23866764	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	4248	23866764	83482776	868	147349											
MYH6	4624	broad.mit.edu	37	chr14	23867880	23867880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctttgaagcagcaggacCctggccctttgtgtcttcag	12	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23867880	A	A	23867880	1	1	183	0	1	0	0	0	0	0	0	0	10132	638	22	2		2	MYH6	14	23867880	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1116	23867880	83481660	869	147350											
MYH7	4625	broad.mit.edu	37	chr14	23884105	23884105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgcattcccatcctcGccctggaagaggctaagagc	13	13	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23884105	T	T	23884105	1	4	183	0	1	0	0	0	0	0	0	0	10133	1102	38	3		3	MYH7	14	23884105	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	16225	23884105	83465435	870	147351											
MYH7	4625	broad.mit.edu	37	chr14	23886822	23886823	+	Nonsense_Mutation	DNP	CC	AA	AA													tagccggtgcttggtcttctCcagcgaggagcacttggcat							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	23886823	AA	AA	23886822	4	1	183	1	0	0	0	0	0	1	0	0	10133	864	30	3	1604	3	MYH7	14	23886822	Nonsense_Mutation	DNP	CC	TCGA-64-1676-01A-01W-0928-08	2717	23886822	83462718	871	147352											
RNF31	55072	broad.mit.edu	37	chr14	24617145	24617145	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggacaccagggcctgaggcCcaggccacgctcacacctct	12	17	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24617145	G	G	24617145	1	3	183	0	1	0	0	0	0	0	0	0	13598	638	22	4		4	RNF31	14	24617145	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	730323	24617145	82732395	872	147353											
TM9SF1	10548	broad.mit.edu	37	chr14	24662175	24662175	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accacggcgcctgtcactccGacgctccactgaagtctcag	9	17	2	1	rs150301168	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24662175	A	A	24662175	3	1	183	1	0	0	0	0	1	0	0	0	16100	1057	37	4	1233	4	TM9SF1	14	24662175	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	45030	24662175	82687365	873	147354											
ARHGAP5	394	broad.mit.edu	37	chr14	32560197	32560198	+	Missense_Mutation	DNP	CG	TC	TC													accagactttcttgcctcatCggagtacgaatttgcaacca							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	32560198	TC	TC	32560197	3	4	183	1	0	0	0	0	1	0	0	0	888	875	31	4	324	4	ARHGAP5	14	32560197	Missense_Mutation	DNP	CG	TCGA-64-1676-01A-01W-0928-08	7898022	32560197	74789343	874	147355											
AKAP6	9472	broad.mit.edu	37	chr14	33205041	33205041	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaattcctgtctgagacaaGaaaaggaaggaacaatgaat	9	6	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33205041	T	T	33205041	4	4	183	1	0	0	0	0	0	1	0	0	455	943	33	3	3363	3	AKAP6	14	33205041	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	644844	33205041	74144499	875	147356											
BRMS1L	84312	broad.mit.edu	37	chr14	36337046	36337046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgatgttaattgttaatGttctgaccctttgttcttct	7	6	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36337046	T	T	36337046	1	4	183	0	1	0	0	0	0	0	0	0	1526	1392	48	3		3	BRMS1L	14	36337046	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3132005	36337046	71012494	876	147357											
SEC23A	10484	broad.mit.edu	37	chr14	39556195	39556195	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgagtaagtggtactttAgagagccccagcatttcctg	11	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39556195	C	C	39556195	2	2	183	1	0	0	0	0	0	0	0	1	14104	407	15	5		5	SEC23A	14	39556195	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	3219149	39556195	67793345	877	147358											
MDGA2	161357	broad.mit.edu	37	chr14	47913309	47913309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgtaagcattacatccCtagaaaaataatccccagga	5	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47913309	A	A	47913309	1	1	183	0	1	0	0	0	0	0	0	0	9500	696	24	2		2	MDGA2	14	47913309	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8357114	47913309	59436231	878	147359											
SDCCAG1	9147	broad.mit.edu	37	chr14	50140755	50140755	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaattccattctttaaaTatccctgagatttccctaaa	2	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50140755	A	A	50140755	1	1	183	0	1	0	0	0	0	0	0	0	14070	1421	49	5		5	SDCCAG1	14	50140755	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	2227446	50140755	57208785	879	147360											
SDCCAG1	9147	broad.mit.edu	37	chr14	50192497	50192497	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaattaaagtaagtgtgGtaaaaagtcatctttatata	7	3	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50192497	T	T	50192497	1	4	183	0	1	0	0	0	0	0	0	0	14070	1276	44	3		3	SDCCAG1	14	50192497	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	51742	50192497	57157043	880	147361											
GNG2	54331	broad.mit.edu	37	chr14	52417530	52417530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctagcgtgagtctaaggcGcatgtcatgtgaccactctt	10	10	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52417530	T	T	52417530	1	4	183	0	1	0	0	0	0	0	0	0	6591	1102	38	3		3	GNG2	14	52417530	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2225033	52417530	54932010	881	147362											
GPR135	64582	broad.mit.edu	37	chr14	59930621	59930621	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttggaagaggacatcctgtTgcaggcccccagccggttgg	15	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59930621	A	A	59930621	3	1	183	1	0	0	0	0	1	0	0	0	6709	1812	63	5	164	5	GPR135	14	59930621	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	7513091	59930621	47418919	882	147363											
JKAMP	51528	broad.mit.edu	37	chr14	59970757	59970757	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaatttaccgaaccttcAaggatactctcagaaggagc	8	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59970757	T	T	59970757	2	4	183	1	0	0	0	0	0	0	0	1	8019	117	5	5		5	JKAMP	14	59970757	Silent	SNP	A	TCGA-64-1676-01A-01W-0928-08	40136	59970757	47378783	883	147364											
SYNE2	23224	broad.mit.edu	37	chr14	64483301	64483301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgaaaacttttgaagaGcccccttttgaaaaagaggc	8	7	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64483301	T	T	64483301	3	4	183	1	0	0	0	0	1	0	0	0	15565	962	34	3	4965	3	SYNE2	14	64483301	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4512544	64483301	42866239	884	147365											
SPTB	6710	broad.mit.edu	37	chr14	65249327	65249327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgactgggccttggatcagCcctgctcctgatggttgcaa	12	12	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65249327	A	A	65249327	1	1	183	0	1	0	0	0	0	0	0	0	15236	754	26	3		3	SPTB	14	65249327	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	766026	65249327	42100213	885	147366											
SPTB	6710	broad.mit.edu	37	chr14	65253520	65253520	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgacttcccccagcaagtCctcctggccctgcagggatt	10	16	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65253520	A	A	65253520	3	1	183	1	0	0	0	0	1	0	0	0	15236	855	30	3	3976	3	SPTB	14	65253520	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4193	65253520	42096020	886	147367											
SMOC1	64093	broad.mit.edu	37	chr14	70497061	70497061	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagcgttgcccatggccCtgccacatcccgtgtaacat	8	16	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70497061	A	A	70497061	1	1	183	0	1	0	0	0	0	0	0	0	14915	696	24	2		2	SMOC1	14	70497061	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	5243541	70497061	36852479	887	147368											
SLC8A3	6547	broad.mit.edu	37	chr14	70515594	70515594	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatgatggcggtgagcatgCcaatgatgaggatggagacg	16	6	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70515594	G	G	70515594	3	3	183	1	0	0	0	0	1	0	0	0	14822	739	26	4	494	4	SLC8A3	14	70515594	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	18533	70515594	36833946	888	147369											
LTBP2	4053	broad.mit.edu	37	chr14	74969481	74969481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagggacggtgtcctcgGggcccaggtagttgtagaag	17	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74969481	T	T	74969481	3	4	183	1	0	0	0	0	1	0	0	0	9161	1232	43	2	432	2	LTBP2	14	74969481	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4453887	74969481	32380059	889	147370											
ANGEL1	23357	broad.mit.edu	37	chr14	77274520	77274521	+	Intron	DNP	GG	AA	AA													gattgggagaagcactcaatGgcaagtatgagtaatgcaga							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	77274521	AA	AA	77274520	1	1	183	0	1	0	0	0	0	0	0	0	608	1363	47	4		4	ANGEL1	14	77274520	Intron	DNP	GG	TCGA-64-1676-01A-01W-0928-08	2305039	77274520	30075020	890	147371											
GALC	2581	broad.mit.edu	37	chr14	88419821	88419821	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagccacattcacataaactCtgacaaaggtcctgaagaaa	6	10	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88419821	G	G	88419821	1	3	183	0	1	0	0	0	0	0	0	0	6263	928	32	4		4	GALC	14	88419821	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	11145301	88419821	18929719	891	147372											
KCNK10	54207	broad.mit.edu	37	chr14	88658607	88658607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccaccgtggtcagagtgaCcaccacaaagtaaatggact	10	12	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88658607	A	A	88658607	3	1	183	1	0	0	0	0	1	0	0	0	8129	507	18	3	814	3	KCNK10	14	88658607	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	238786	88658607	18690933	892	147373											
KCNK10	54207	broad.mit.edu	37	chr14	88792843	88792843	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttctgtctccctctgtgcCgccgcaacttccatggctat	9	15	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88792843	T	T	88792843	1	4	183	0	1	0	0	0	0	0	0	0	8129	667	23	4		4	KCNK10	14	88792843	5'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	134236	88792843	18556697	893	147374											
CCDC88C	440193	broad.mit.edu	37	chr14	91755746	91755746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacacacccccagtgggtcCctggttccctaacatgggct	9	17	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91755746	A	A	91755746	1	1	183	0	1	0	0	0	0	0	0	0	2893	638	22	2		2	CCDC88C	14	91755746	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2962903	91755746	15593794	894	147375											
IFI27L2	83982	broad.mit.edu	37	chr14	94596008	94596008	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactctgccctagagagacGcaggccccgccccccgcccc	9	22	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94596008	T	T	94596008	1	4	183	0	1	0	0	0	0	0	0	0	7584	1102	38	3		3	IFI27L2	14	94596008	5'Flank	SNP	G	TCGA-64-1676-01A-01W-0928-08	2840262	94596008	12753532	895	147376											
SERPINA4	5267	broad.mit.edu	37	chr14	95030031	95030031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatcgcttcggagacccCggggaagaacatctttttct	10	12	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95030031	A	A	95030031	3	1	183	1	0	0	0	0	1	0	0	0	14204	652	23	1	214	1	SERPINA4	14	95030031	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	434023	95030031	12319509	896	147377											
C14orf49	161176	broad.mit.edu	37	chr14	95934127	95934127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacaaaggccctggatgcCctacctgtgacagtgagtca	12	11	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95934127	A	A	95934127	1	1	183	0	1	0	0	0	0	0	0	0	1789	638	22	2		2	C14orf49	14	95934127	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	904096	95934127	11415413	897	147378											
HHIPL1	84439	broad.mit.edu	37	chr14	100118631	100118631	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgcgcacggtgcccgGgctctgccaggattactgcc	13	17	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100118631	T	T	100118631	3	4	183	1	0	0	0	0	1	0	0	0	7160	1232	43	2	332	2	HHIPL1	14	100118631	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4184504	100118631	7230909	898	147379											
WDR25	79446	broad.mit.edu	37	chr14	100934506	100934507	+	Splice_Site	INS	-	T	T													ctaacagaccttgaaacaggINStgcgtttcttgtgtcacctc							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100934507	T	T	100934506	8	5	183	1	0	1	1	0	0	0	1	0	17409	1275	44	0	977	0	WDR25	14	100934506	Splice_Site	INS	-	TCGA-64-1676-01A-01W-0928-08	815875	100934506	6415034	899	147380											
TDRD9	122402	broad.mit.edu	37	chr14	104441930	104441930	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttatagtgagcgtacTcttgtattggatcaaacctg	8	7	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104441930	C	C	104441930	1	2	183	0	1	0	0	0	0	0	0	0	15858	1566	54	5		5	TDRD9	14	104441930	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	3507424	104441930	2907610	900	147381											
AHNAK2	113146	broad.mit.edu	37	chr14	105412420	105412420	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaggtccccctccagccgtGcaccatccaacttggctcct	7	19	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105412420	C	C	105412420	3	2	183	1	0	0	0	0	1	0	0	0	415	1319	46	4	8023	4	AHNAK2	14	105412420	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	970490	105412420	1937120	901	147382											
BRF1	2972	broad.mit.edu	37	chr14	105695089	105695089	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtggcgcctgctctggCaagcaggcctgagctggact	17	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105695089	T	T	105695089	1	4	183	0	1	0	0	0	0	0	0	0	1519	725	25	4		4	BRF1	14	105695089	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	282669	105695089	1654451	902	147383											
C15orf2	23742	broad.mit.edu	37	chr15	24922547	24922547	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctccttcaagcctcccgtCacaagggagtccccaatatc	6	18	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922547	A	A	24922547	2	1	183	1	0	0	0	0	0	0	0	1	1797	813	29	3		3	C15orf2	15	24922547	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08		24922547	77608845	903	147384											
OCA2	4948	broad.mit.edu	37	chr15	28141303	28141303	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccttgccagaactaccagtGgcaatgaagtttttggtgcc	11	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28141303	C	C	28141303	1	2	183	0	1	0	0	0	0	0	0	0	10910	1363	47	4		4	OCA2	15	28141303	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3218756	28141303	74390089	904	147385											
RYR3	6263	broad.mit.edu	37	chr15	33872331	33872331	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactcaaaaacagacaaaatCttttcaaggaagaggtaagt	7	7	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33872331	G	G	33872331	3	3	183	1	0	0	0	0	1	0	0	0	13881	913	32	4	1473	4	RYR3	15	33872331	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5731028	33872331	68659061	905	147386											
SEMA6D	80031	broad.mit.edu	37	chr15	48057248	48057248	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagattgaagcctacaaccaTgcaaagtaggtatatgttac	9	7	0	2	rs147987261		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48057248	G	G	48057248	3	3	183	1	0	0	0	0	1	0	0	0	14155	1461	51	5	1468	5	SEMA6D	15	48057248	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	14184917	48057248	54474144	906	147387											
USP8	9101	broad.mit.edu	37	chr15	50759274	50759274	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagccaggagttgaggtggAagtcaccattggagatgctt	15	6	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50759274	C	C	50759274	1	2	183	0	1	0	0	0	0	0	0	0	17216	261	9	5		5	USP8	15	50759274	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2702026	50759274	51772118	907	147388											
UNC13C	440279	broad.mit.edu	37	chr15	54586108	54586108	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagtgagtgtcataactcCacagatcgaatcaaagtcag	8	9	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54586108	A	A	54586108	2	1	183	1	0	0	0	0	0	0	0	1	17112	581	21	2		2	UNC13C	15	54586108	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	3826834	54586108	47945284	908	147389											
FAM81A	145773	broad.mit.edu	37	chr15	59808843	59808843	+	Splice_Site	DEL	G	-	-													agttcttatcatggatctcaGggagccagtgaaagggatat							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59808843	-	-	59808843	8	5	183	1	0	1	0	1	0	0	1	0	5681	1014	35	0	812	0	FAM81A	15	59808843	Splice_Site	DEL	G	TCGA-64-1676-01A-01W-0928-08	5222735	59808843	42722549	909	147390											
VPS13C	54832	broad.mit.edu	37	chr15	62304305	62304305	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacttttactattacttaCtgtattgataatttgggggt	7	4	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62304305	A	A	62304305	5	1	183	1	0	0	0	0	0	0	1	0	17318	579	20	3	10701	3	VPS13C	15	62304305	Splice_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	2495462	62304305	40227087	910	147391											
TLN2	83660	broad.mit.edu	37	chr15	63088515	63088515	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgtgggggtcctggacgggGagaggttcaggctggcctgc	20	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63088515	T	T	63088515	1	4	183	0	1	0	0	0	0	0	0	0	16071	1189	41	3		3	TLN2	15	63088515	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	784210	63088515	39442877	911	147392											
HERC1	8925	broad.mit.edu	37	chr15	63987027	63987027	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggtagcagacaactgttGataaattttatgcacagcta	9	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63987027	C	C	63987027	3	2	183	1	0	0	0	0	1	0	0	0	7124	1299	45	4	9601	4	HERC1	15	63987027	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	898512	63987027	38544365	912	147393											
DENND4A	10260	broad.mit.edu	37	chr15	66063763	66063763	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctgacataataaacaCcacccaagttttctgtctgc	5	13	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66063763	T	T	66063763	1	4	183	0	1	0	0	0	0	0	0	0	4473	522	18	4		4	DENND4A	15	66063763	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2076736	66063763	36467629	913	147394											
MAP2K1	5604	broad.mit.edu	37	chr15	66729153	66729153	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgcaggttctgcatgagTgcaactctccgtacatcgtg	11	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66729153	A	A	66729153	3	1	183	1	0	0	0	0	1	0	0	0	9328	1696	59	5	371	5	MAP2K1	15	66729153	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	665390	66729153	35802239	914	147395											
ISL2	64843	broad.mit.edu	37	chr15	76629329	76629329	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtgtgtgtgtatgcttAatatgcaaaatttctaatgc	11	4	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76629329	G	G	76629329	1	3	183	0	1	0	0	0	0	0	0	0	7927	377	13	5		5	ISL2	15	76629329	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	9900176	76629329	25902063	915	147396											
LINGO1	84894	broad.mit.edu	37	chr15	77907260	77907260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagttgaggccgcggaagGcatagggctccaccacggcc	16	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77907260	T	T	77907260	3	4	183	1	0	0	0	0	1	0	0	0	8887	1203	42	3	877	3	LINGO1	15	77907260	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1277931	77907260	24624132	916	147397											
TMED3	23423	broad.mit.edu	37	chr15	79614583	79614583	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcctgctctagggcccctCatgccccaggctggagcagc	11	17	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79614583	T	T	79614583	1	4	183	0	1	0	0	0	0	0	0	0	16128	841	29	4		4	TMED3	15	79614583	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	1707323	79614583	22916809	917	147398											
IL16	3603	broad.mit.edu	37	chr15	81585042	81585042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatgtctgggtccccaggGggaagtcctgggagtggcag	17	9	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81585042	T	T	81585042	2	4	183	1	0	0	0	0	0	0	0	1	7703	1219	43	2		2	IL16	15	81585042	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1970459	81585042	20946350	918	147399											
AKAP13	11214	broad.mit.edu	37	chr15	86266326	86266326	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgaagtggagcaggaagatCtagcacagtccttgagcctg	13	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86266326	A	A	86266326	3	1	183	1	0	0	0	0	1	0	0	0	449	912	32	3	6688	3	AKAP13	15	86266326	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4681284	86266326	16265066	919	147400											
AGBL1	123624	broad.mit.edu	37	chr15	86702201	86702201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaattaatggagccatGgaactgcttttcaaggttat	11	6	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86702201	T	T	86702201	3	4	183	1	0	0	0	0	1	0	0	0	375	1348	47	2	304	2	AGBL1	15	86702201	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	435875	86702201	15829191	920	147401											
ACAN	176	broad.mit.edu	37	chr15	89400186	89400186	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttccttctggagaagttcTagagacttctacctctgcgg	10	11	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89400186	C	C	89400186	3	2	183	1	0	0	0	0	1	0	0	0	117	1522	53	5	4412	5	ACAN	15	89400186	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	2697985	89400186	13131206	921	147402											
C15orf42	90381	broad.mit.edu	37	chr15	90138748	90138748	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatggcagtccggatgtGgctggggagaaaggaatcca	16	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90138748	T	T	90138748	2	4	183	1	0	0	0	0	0	0	0	1	1809	1335	47	2		2	C15orf42	15	90138748	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	738562	90138748	12392644	922	147403											
LRRC28	123355	broad.mit.edu	37	chr15	99798554	99798554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaaacactctaggacgGggaacgaccattacccttgt	11	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99798554	T	T	99798554	1	4	183	0	1	0	0	0	0	0	0	0	9069	1247	43	2		2	LRRC28	15	99798554	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	9659806	99798554	2732838	923	147404											
ADAMTS17	170691	broad.mit.edu	37	chr15	100672318	100672318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccgtccacatgctccgGgatgggcgtcttgctcacgc	12	15	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100672318	T	T	100672318	3	4	183	1	0	0	0	0	1	0	0	0	262	1232	43	2	1716	2	ADAMTS17	15	100672318	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	873764	100672318	1859074	924	147405											
CACNA1H	8912	broad.mit.edu	37	chr16	1261227	1261227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgctgatatcatcactcaGgcccattgggaacatcgtcc	9	13	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1261227	T	T	1261227	3	4	183	1	0	0	0	0	1	0	0	0	2571	1000	35	2	4365	2	CACNA1H	16	1261227	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08		1261227	89093526	925	147406											
ADCY9	115	broad.mit.edu	37	chr16	4164474	4164474	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgagggctttttccacttCcaggtccttcccgtgcataa	8	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4164474	T	T	4164474	3	4	183	1	0	0	0	0	1	0	0	0	301	864	30	4	3131	4	ADCY9	16	4164474	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2903247	4164474	86190279	926	147407											
PPL	5493	broad.mit.edu	37	chr16	4934426	4934426	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggcctccctgcgggcctgCcgctcgcgctctagctcctc	11	20	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4934426	T	T	4934426	2	4	183	1	0	0	0	0	0	0	0	1	12435	726	26	4		4	PPL	16	4934426	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	769952	4934426	85420327	927	147408											
A2BP1	54715	broad.mit.edu	37	chr16	7435292	7435292	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggagagcagttaggaagcTgtctgggagtccaggcaagg	17	7	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7435292	A	A	7435292	1	1	183	0	1	0	0	0	0	0	0	0	3	1595	55	5		5	A2BP1	16	7435292	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	2500866	7435292	82919461	928	147409											
TEKT5	146279	broad.mit.edu	37	chr16	10729817	10729817	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaccacccaccaggcccttCtgacctcctctgactggggg	9	18	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10729817	A	A	10729817	1	1	183	0	1	0	0	0	0	0	0	0	15878	928	32	3		3	TEKT5	16	10729817	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3294525	10729817	79624936	929	147410											
SNX29	92017	broad.mit.edu	37	chr16	12371771	12371771	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgaaatatttatgacaTgtctctctttctctaaagtg	6	7	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12371771	A	A	12371771	1	1	183	0	1	0	0	0	0	0	0	0	15012	1479	51	5		5	SNX29	16	12371771	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1641954	12371771	77982982	930	147411											
MYH11	4629	broad.mit.edu	37	chr16	15829246	15829246	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcctgctgagtggctgtGctgtccagtgtgtcttccag	13	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15829246	T	T	15829246	3	4	183	1	0	0	0	0	1	0	0	0	10125	1310	46	3	2534	3	MYH11	16	15829246	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3457475	15829246	74525507	931	147412											
ABCC1	4363	broad.mit.edu	37	chr16	16110579	16110579	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccatccaggatctcgttcCagcctccctcaacccctgat	5	18	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16110579	T	T	16110579	1	4	183	0	1	0	0	0	0	0	0	0	49	609	21	4		4	ABCC1	16	16110579	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	281333	16110579	74244174	932	147413											
SMG1	23049	broad.mit.edu	37	chr16	18897028	18897028	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccgtgaacattcaacaaAatagggagaaaacaagcaaa	7	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18897028	C	C	18897028	1	2	183	0	1	0	0	0	0	0	0	0	14909	29	1	5		5	SMG1	16	18897028	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2786449	18897028	71457725	933	147414											
SMG1	23049	broad.mit.edu	37	chr16	18907284	18907284	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctaatcaacttatgcctgTgcaaggcgttagtaagaggc	12	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18907284	C	C	18907284	1	2	183	0	1	0	0	0	0	0	0	0	14909	1711	59	5		5	SMG1	16	18907284	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	10256	18907284	71447469	934	147415											
PDILT	204474	broad.mit.edu	37	chr16	20410409	20410409	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcatccatcacccaggatGggggcactcacggaaaagca	10	12	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20410409	T	T	20410409	1	4	183	0	1	0	0	0	0	0	0	0	11768	1363	47	2		2	PDILT	16	20410409	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1503125	20410409	69944344	935	147416											
ACSM2A	123876	broad.mit.edu	37	chr16	20490056	20490056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggatgggagcactaaacgGgatgagggaggacaaatgtt	17	4	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20490056	T	T	20490056	1	4	183	0	1	0	0	0	0	0	0	0	183	1247	43	2		2	ACSM2A	16	20490056	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	79647	20490056	69864697	936	147417											
DNAH3	55567	broad.mit.edu	37	chr16	20986464	20986464	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccagccttgcctaccctTtctgagcctcacttttctca	5	17	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20986464	G	G	20986464	1	3	183	0	1	0	0	0	0	0	0	0	4643	1856	64	5		5	DNAH3	16	20986464	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	496408	20986464	69368289	937	147418											
DNAH3	55567	broad.mit.edu	37	chr16	20994324	20994324	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcaggcttcctcctggcGctccagggatgtgactgtca	15	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20994324	T	T	20994324	1	4	183	0	1	0	0	0	0	0	0	0	4643	1102	38	3		3	DNAH3	16	20994324	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	7860	20994324	69360429	938	147419											
DNAH3	55567	broad.mit.edu	37	chr16	21122843	21122843	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcagaaaaaacttgatctAgaaaataatctgttcattgc	8	6	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21122843	G	G	21122843	1	3	183	0	1	0	0	0	0	0	0	0	4643	435	15	5		5	DNAH3	16	21122843	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	128519	21122843	69231910	939	147420											
ANKS4B	257629	broad.mit.edu	37	chr16	21261202	21261202	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagactccactggatgctgcTgccagcagggagcagaatga	13	11	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21261202	A	A	21261202	2	1	183	1	0	0	0	0	0	0	0	1	691	1567	55	5		5	ANKS4B	16	21261202	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	138359	21261202	69093551	940	147421											
TNRC6A	27327	broad.mit.edu	37	chr16	24817548	24817548	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgttagcgcagcagcaaAgggcgcagagtcagagaagc	15	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24817548	G	G	24817548	3	3	183	1	0	0	0	0	1	0	0	0	16463	63	3	5	4335	5	TNRC6A	16	24817548	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	3556346	24817548	65537205	941	147422											
IL27	246778	broad.mit.edu	37	chr16	28515060	28515060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagggaaacatcagggaGctgctctcccaggggcagga	16	10	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28515060	T	T	28515060	3	4	183	1	0	0	0	0	1	0	0	0	7750	971	34	3	484	3	IL27	16	28515060	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3697512	28515060	61839693	942	147423											
ATP2A1	487	broad.mit.edu	37	chr16	28906166	28906166	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaggtgtctatgagaaggtCggcgaggccaccgagacagc	15	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28906166	A	A	28906166	2	1	183	1	0	0	0	0	0	0	0	1	1140	871	31	3		3	ATP2A1	16	28906166	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	391106	28906166	61448587	943	147424											
RABEP2	79874	broad.mit.edu	37	chr16	28916237	28916237	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaaggcgtctttcccaGggtgggggtggggatatcct	19	7	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28916237	A	A	28916237	1	1	183	0	1	0	0	0	0	0	0	0	13070	1015	35	4		4	RABEP2	16	28916237	3'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	10071	28916237	61438516	944	147425											
RNF40	9810	broad.mit.edu	37	chr16	30780747	30780747	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgccgccagcttgcagactgGagctggagaggtgggggtca	18	10	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30780747	T	T	30780747	1	4	183	0	1	0	0	0	0	0	0	0	13604	1189	41	3		3	RNF40	16	30780747	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1864510	30780747	59574006	945	147426											
ITGAM	3684	broad.mit.edu	37	chr16	31309152	31309152	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccctaacagtgctgggGgacgtaaatggggacaagct	15	9	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31309152	T	T	31309152	2	4	183	1	0	0	0	0	0	0	0	1	7957	1219	43	2		2	ITGAM	16	31309152	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	528405	31309152	59045601	946	147427											
ITGAX	3687	broad.mit.edu	37	chr16	31388256	31388256	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagcctggcttctgtccCctcactgctcccctgcccca	8	20	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31388256	T	T	31388256	1	4	183	0	1	0	0	0	0	0	0	0	7959	638	22	4		4	ITGAX	16	31388256	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	79104	31388256	58966497	947	147428											
ABCC12	94160	broad.mit.edu	37	chr16	48149223	48149223	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctccctccccacattccCagctgaagacaggcagatat	8	15	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48149223	T	T	48149223	1	4	183	0	1	0	0	0	0	0	0	0	52	609	21	4		4	ABCC12	16	48149223	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	16760967	48149223	42205530	948	147429											
ABCC12	94160	broad.mit.edu	37	chr16	48167812	48167812	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacactagcattatgaaatgTattagccctacttggtcctc	6	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48167812	C	C	48167812	1	2	183	0	1	0	0	0	0	0	0	0	52	1653	57	5		5	ABCC12	16	48167812	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	18589	48167812	42186941	949	147430											
ABCC12	94160	broad.mit.edu	37	chr16	48172004	48172004	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccataatcctttgaaaaattCtttgacctgcagagcagctc	6	11	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48172004	A	A	48172004	1	1	183	0	1	0	0	0	0	0	0	0	52	928	32	3		3	ABCC12	16	48172004	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4192	48172004	42182749	950	147431											
ABCC11	85320	broad.mit.edu	37	chr16	48218375	48218375	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcacgatgttgacagccatGactttaaaggagtagggggt	14	6	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48218375	T	T	48218375	2	4	183	1	0	0	0	0	0	0	0	1	51	1277	45	3		3	ABCC11	16	48218375	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	46371	48218375	42136378	951	147432											
ZNF423	23090	broad.mit.edu	37	chr16	49559353	49559353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgacagaggagcttggcCggggagtcgaacatctggtt	17	7	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49559353	A	A	49559353	2	1	183	1	0	0	0	0	0	0	0	1	18025	639	23	1		1	ZNF423	16	49559353	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1340978	49559353	40795400	952	147433											
NOD2	64127	broad.mit.edu	37	chr16	50744734	50744734	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggtgaggcgggcagtggCaagagcacgctcctgcagcg	19	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50744734	A	A	50744734	2	1	183	1	0	0	0	0	0	0	0	1	10612	697	25	3		3	NOD2	16	50744734	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	1185381	50744734	39610019	953	147434											
NOD2	64127	broad.mit.edu	37	chr16	50745614	50745614	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgccagggagtacggcgCccctggaattccttcacatc	11	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50745614	A	A	50745614	3	1	183	1	0	0	0	0	1	0	0	0	10612	739	26	3	1806	3	NOD2	16	50745614	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	880	50745614	39609139	954	147435											
CYLD	1540	broad.mit.edu	37	chr16	50788335	50788335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcaatgatatcatcccaGgtatgttttctttgttttat	5	7	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50788335	T	T	50788335	3	4	183	1	0	0	0	0	1	0	0	0	4176	1014	35	2	923	2	CYLD	16	50788335	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	42721	50788335	39566418	955	147436											
SALL1	6299	broad.mit.edu	37	chr16	51173730	51173730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactccatggactcagagtaGctgtcggggactggggtgtt	16	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51173730	T	T	51173730	3	4	183	1	0	0	0	0	1	0	0	0	13921	962	34	3	1579	3	SALL1	16	51173730	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	385395	51173730	39181023	956	147437											
CHD9	80205	broad.mit.edu	37	chr16	53342725	53342725	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcttcaaagtgcatcagAgaccagcctcgtcaatttcc	8	12	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53342725	G	G	53342725	3	3	183	1	0	0	0	0	1	0	0	0	3363	304	11	5	7263	5	CHD9	16	53342725	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	2168995	53342725	37012028	957	147438											
SLC6A2	6530	broad.mit.edu	37	chr16	55729051	55729051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtgaggccctgtatcCatgtggcagcaggagccact	14	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55729051	A	A	55729051	1	1	183	0	1	0	0	0	0	0	0	0	14797	609	21	2		2	SLC6A2	16	55729051	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2386326	55729051	34625702	958	147439											
CES7	221223	broad.mit.edu	37	chr16	55880525	55880525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccgaggctcatgttcaaGtccagctggaggtactgctc	12	11	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55880525	T	T	55880525	3	4	183	1	0	0	0	0	1	0	0	0	3302	1020	36	3	165	3	CES7	16	55880525	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	151474	55880525	34474228	959	147440											
CES7	221223	broad.mit.edu	37	chr16	55905755	55905755	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagttcttctgacagcgGggaggcctggccgtctcctc	14	14	3	1	rs141262535	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55905755	T	T	55905755	1	4	183	0	1	0	0	0	0	0	0	0	3302	1247	43	2		2	CES7	16	55905755	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	25230	55905755	34448998	960	147441											
BBS2	583	broad.mit.edu	37	chr16	56536210	56536210	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcctccattacctggtcaCattaggacctacacctacct	5	16	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56536210	G	G	56536210	1	3	183	0	1	0	0	0	0	0	0	0	1343	493	17	4		4	BBS2	16	56536210	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	630455	56536210	33818543	961	147442											
BBS2	583	broad.mit.edu	37	chr16	56536304	56536304	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctctcggatcaggtcCtgctctgcactggtgtccat	10	14	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56536304	A	A	56536304	3	1	183	1	0	0	0	0	1	0	0	0	1343	680	24	2	1196	2	BBS2	16	56536304	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	94	56536304	33818449	962	147443											
SLC12A3	6559	broad.mit.edu	37	chr16	56901119	56901119	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgcttcggctgggtcaaGggggtgatggtgagtggggt	22	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56901119	A	A	56901119	2	1	183	1	0	0	0	0	0	0	0	1	14497	991	35	4		4	SLC12A3	16	56901119	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	364815	56901119	33453634	963	147444											
SLC12A3	6559	broad.mit.edu	37	chr16	56906417	56906417	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accatggctctggggacaggGactctctacccaggaatctg	12	12	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56906417	C	C	56906417	1	2	183	0	1	0	0	0	0	0	0	0	14497	1189	41	4		4	SLC12A3	16	56906417	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	5298	56906417	33448336	964	147445											
CNGB1	1258	broad.mit.edu	37	chr16	57937712	57937712	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctggtggctgccagggCgtgaccatcttacccagcat	14	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57937712	T	T	57937712	1	4	183	0	1	0	0	0	0	0	0	0	3632	783	27	4		4	CNGB1	16	57937712	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1031295	57937712	32417041	965	147446											
CNGB1	1258	broad.mit.edu	37	chr16	57996582	57996582	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccagccccctgggcagccTggagtgggcaccgagagctc	14	17	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57996582	A	A	57996582	1	1	183	0	1	0	0	0	0	0	0	0	3632	1595	55	5		5	CNGB1	16	57996582	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	58870	57996582	32358171	966	147447											
CCDC113	29070	broad.mit.edu	37	chr16	58314662	58314662	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgggcttcctgggtccccCtgtgataaaagacagaaggc	12	10	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58314662	T	T	58314662	1	4	183	0	1	0	0	0	0	0	0	0	2776	695	24	4		4	CCDC113	16	58314662	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	318080	58314662	32040091	967	147448											
CDH8	1006	broad.mit.edu	37	chr16	61851501	61851501	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaagagaagaccggaggctCatcagcatcttcaaccacga	10	11	4	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61851501	A	A	61851501	4	1	183	1	0	0	0	0	0	1	0	0	3146	835	29	3	1264	3	CDH8	16	61851501	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3536839	61851501	28503252	968	147449											
TRADD	8717	broad.mit.edu	37	chr16	67190465	67190465	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaccttctgctgggggtgCgcgtaggcatccgacaggac	15	13	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67190465	A	A	67190465	2	1	183	1	0	0	0	0	0	0	0	1	16560	755	27	3		3	TRADD	16	67190465	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	5338964	67190465	23164288	969	147450											
DPEP3	64180	broad.mit.edu	37	chr16	68010643	68010643	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaccaatcccgatgaactCagatccaatgactgccctga	6	15	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68010643	T	T	68010643	3	4	183	1	0	0	0	0	1	0	0	0	4755	835	29	4	424	4	DPEP3	16	68010643	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	820178	68010643	22344110	970	147451											
TAT	6898	broad.mit.edu	37	chr16	71604708	71604708	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcggtgctgagggtggccagTggttcatatttgcaatccga	14	8	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71604708	A	A	71604708	2	1	183	1	0	0	0	0	0	0	0	1	15709	1683	59	5		5	TAT	16	71604708	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	3594065	71604708	18750045	971	147452											
CTRB2	440387	broad.mit.edu	37	chr16	75238132	75238132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtacacagcgggcgtggtgGtagagcaggtgcggctgccc	18	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75238132	T	T	75238132	3	4	183	1	0	0	0	0	1	0	0	0	4060	1261	44	3	76	3	CTRB2	16	75238132	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3633424	75238132	15116621	972	147453											
CNTNAP4	85445	broad.mit.edu	37	chr16	76587726	76587726	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccctttgttgtgctttaActgcagatcattctggaaca	7	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76587726	C	C	76587726	1	2	183	0	1	0	0	0	0	0	0	0	3681	58	2	5		5	CNTNAP4	16	76587726	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1349594	76587726	13767027	973	147454											
DYNLRB2	83657	broad.mit.edu	37	chr16	80583596	80583596	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcatctttctaatttgctAgattaaaagccttgtttcta	4	7	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80583596	G	G	80583596	1	3	183	0	1	0	0	0	0	0	0	0	4891	435	15	5		5	DYNLRB2	16	80583596	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	3995870	80583596	9771157	974	147455											
PKD1L2	114780	broad.mit.edu	37	chr16	81167390	81167390	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccataggcccctctctcaCctgctgcaatgggctctgcg	9	16	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81167390	A	A	81167390	1	1	183	0	1	0	0	0	0	0	0	0	12060	522	18	3		3	PKD1L2	16	81167390	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	583794	81167390	9187363	975	147456											
SDR42E1	93517	broad.mit.edu	37	chr16	82033148	82033148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatctgagatgaagtagggCtgcccagaggcaatatggcc	13	10	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82033148	A	A	82033148	3	1	183	1	0	0	0	0	1	0	0	0	14086	796	28	3	435	3	SDR42E1	16	82033148	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	865758	82033148	8321605	976	147457											
RNF167	26001	broad.mit.edu	37	chr17	4845847	4845847	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaggcccatgatggctcCttgtcctctgccttgtctcc	10	14	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4845847	T	T	4845847	1	4	183	0	1	0	0	0	0	0	0	0	13569	696	24	4		4	RNF167	17	4845847	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08		4845847	76349363	977	147458											
FGF11	2256	broad.mit.edu	37	chr17	7324973	7324973	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatctgtggtggtgctggGgtgccagggcccacacagca	17	10	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7324973	A	A	7324973	1	1	183	0	1	0	0	0	0	0	0	0	5897	1247	43	4		4	FGF11	17	7324973	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2479126	7324973	73870237	978	147459											
TP53	7157	broad.mit.edu	37	chr17	7577594	7577595	+	Frame_Shift_Del	DEL	AC	-	-													tagttgtagtggatggtggtAcagtcagagccaacctagga							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7577595	-	-	7577594	7	5	183	1	0	1	0	1	0	0	0	0	16505	389	14	0	603	0	TP53	17	7577594	Frame_Shift_Del	DEL	AC	TCGA-64-1676-01A-01W-0928-08	252621	7577594	73617616	979	147460											
MYH4	4622	broad.mit.edu	37	chr17	10356667	10356667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagattagaacagatgacCagaatgtcaatgacaacgta	8	6	1	6			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10356667	A	A	10356667	1	1	183	0	1	0	0	0	0	0	0	0	10131	609	21	2		2	MYH4	17	10356667	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2779073	10356667	70838543	980	147461											
MYH2	4620	broad.mit.edu	37	chr17	10430422	10430422	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaggtgaaaaacaagattCtgcaagcccatgttagaaag	9	6	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10430422	G	G	10430422	1	3	183	0	1	0	0	0	0	0	0	0	10129	928	32	4		4	MYH2	17	10430422	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	73755	10430422	70764788	981	147462											
MYH2	4620	broad.mit.edu	37	chr17	10432233	10432233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctggaactcagcctccCgcttcttgttcatctcaatc	5	14	5	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10432233	A	A	10432233	3	1	183	1	0	0	0	0	1	0	0	0	10129	652	23	1	2363	1	MYH2	17	10432233	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1811	10432233	70762977	982	147463											
DNAH9	1770	broad.mit.edu	37	chr17	11511684	11511684	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatgggcctctgagatatgGgagatgctggttatcagaat	13	5	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11511684	A	A	11511684	1	1	183	0	1	0	0	0	0	0	0	0	4648	1247	43	4		4	DNAH9	17	11511684	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1079451	11511684	69683526	983	147464											
MAP2K4	6416	broad.mit.edu	37	chr17	12044543	12044543	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatcctggatcaaatgcCagctactcccagctctccca	5	15	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12044543	T	T	12044543	3	4	183	1	0	0	0	0	1	0	0	0	9331	594	21	4	1208	4	MAP2K4	17	12044543	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	532859	12044543	69150667	984	147465											
HS3ST3B1	9953	broad.mit.edu	37	chr17	14248435	14248435	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcccctgcgcgcatctcGgccatgtccaaggacaccaa	11	16	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14248435	T	T	14248435	2	4	183	1	0	0	0	0	0	0	0	1	7433	1103	39	1		1	HS3ST3B1	17	14248435	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	2203892	14248435	66946775	985	147466											
MYO15A	51168	broad.mit.edu	37	chr17	18054407	18054407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggcagcccaccctcaCgtcctgttctccacagaaac	6	19	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18054407	A	A	18054407	1	1	183	0	1	0	0	0	0	0	0	0	10157	551	19	3		3	MYO15A	17	18054407	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3805972	18054407	63140803	986	147467											
MFAP4	4239	broad.mit.edu	37	chr17	19288711	19288711	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacggccgaagcccagcttGtagtcattccagccgcggaa	12	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19288711	T	T	19288711	4	4	183	1	0	0	0	0	0	1	0	0	9610	1372	48	3	482	3	MFAP4	17	19288711	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1234304	19288711	61906499	987	147468											
SLC47A1	55244	broad.mit.edu	37	chr17	19445753	19445753	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagcttcataagctccgtGttctgtggccacctgggcaa	10	12	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19445753	T	T	19445753	2	4	183	1	0	0	0	0	0	0	0	1	14761	1364	48	3		3	SLC47A1	17	19445753	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	157042	19445753	61749457	988	147469											
C17orf63	55731	broad.mit.edu	37	chr17	27093631	27093631	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtccagtgttcatctgcgTgtgagaaagaagctgaaagg	13	6	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27093631	A	A	27093631	3	1	183	1	0	0	0	0	1	0	0	0	1887	1696	59	5	30	5	C17orf63	17	27093631	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	7647878	27093631	54101579	989	147470											
PSMD11	5717	broad.mit.edu	37	chr17	30800864	30800864	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggactggaaaactgcgtactCatacttctatgaggcatttg	10	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30800864	T	T	30800864	3	4	183	1	0	0	0	0	1	0	0	0	12800	838	29	4	715	4	PSMD11	17	30800864	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3707233	30800864	50394346	990	147471											
TMEM132E	124842	broad.mit.edu	37	chr17	32962070	32962070	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatggtggacagcagcacGctggcaggactggagccagg	16	11	0	0	rs146893987	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32962070	T	T	32962070	2	4	183	1	0	0	0	0	0	0	0	1	16171	1074	38	3		3	TMEM132E	17	32962070	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	2161206	32962070	48233140	991	147472											
SLFN13	146857	broad.mit.edu	37	chr17	33768287	33768287	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accagtccccatcttcagtaCggaaattctgagcttcgtca	7	13	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33768287	G	G	33768287	3	3	183	1	0	0	0	0	1	0	0	0	14850	536	19	4	676	4	SLFN13	17	33768287	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	806217	33768287	47426923	992	147473											
AP2B1	163	broad.mit.edu	37	chr17	34009643	34009643	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgctgggattacaggcAtgagccaccatgcccagcct	10	12	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34009643	G	G	34009643	1	3	183	0	1	0	0	0	0	0	0	0	743	232	8	5		5	AP2B1	17	34009643	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	241356	34009643	47185567	993	147474											
LYZL6	57151	broad.mit.edu	37	chr17	34263771	34263771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcaccagttgttcatcCcccgtgctccggacacaatc	6	18	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34263771	A	A	34263771	3	1	183	1	0	0	0	0	1	0	0	0	9222	623	22	2	89	2	LYZL6	17	34263771	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	254128	34263771	46931439	994	147475											
FBXO47	494188	broad.mit.edu	37	chr17	37119170	37119170	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttccaaatgttgatatggGttgaaagcctgagccaaggg	12	6	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37119170	A	A	37119170	3	1	183	1	0	0	0	0	1	0	0	0	5813	1261	44	4	1289	4	FBXO47	17	37119170	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2855399	37119170	44076040	995	147476											
GSDMA	284110	broad.mit.edu	37	chr17	38122753	38122753	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgcatggaaatggtgCttggggccttgagctgaaag	17	6	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38122753	T	T	38122753	1	4	183	0	1	0	0	0	0	0	0	0	6882	812	28	4		4	GSDMA	17	38122753	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1003583	38122753	43072457	996	147477											
KRT23	25984	broad.mit.edu	37	chr17	39079200	39079200	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcaaggactttccttggGggaaaatagattttacaaca	10	6	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39079200	A	A	39079200	1	1	183	0	1	0	0	0	0	0	0	0	8531	1247	43	4		4	KRT23	17	39079200	3'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	956447	39079200	42116010	997	147478											
KRTAP4-11	653240	broad.mit.edu	37	chr17	39273977	39273977	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagatgagccagggcagtgGgctcagcagcaagaggaggc	18	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39273977	A	A	39273977	1	1	183	0	1	0	0	0	0	0	0	0	8621	1247	43	4		4	KRTAP4-11	17	39273977	3'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	194777	39273977	41921233	998	147479											
ATP6V0A1	535	broad.mit.edu	37	chr17	40647249	40647249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcaaagcttattcctttcAtgtgcagccctgatttttaa	5	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40647249	T	T	40647249	1	4	183	0	1	0	0	0	0	0	0	0	1172	232	8	5		5	ATP6V0A1	17	40647249	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	1373272	40647249	40547961	999	147480											
RUNDC3A	10900	broad.mit.edu	37	chr17	42394865	42394865	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgccaggaagctcagagcCaaattagtggctcccttcga	11	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42394865	G	G	42394865	1	3	183	0	1	0	0	0	0	0	0	0	13855	594	21	4		4	RUNDC3A	17	42394865	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1747616	42394865	38800345	1000	147481											
ITGA2B	3674	broad.mit.edu	37	chr17	42457270	42457270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgtgtcctgaccaccccCggactcacagcacccagctc	7	21	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42457270	A	A	42457270	1	1	183	0	1	0	0	0	0	0	0	0	7946	667	23	1		1	ITGA2B	17	42457270	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	62405	42457270	38737940	1001	147482											
MAP3K14	9020	broad.mit.edu	37	chr17	43364128	43364128	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagagggtgaggtttccaGggctggagagggtggaatgg	20	5	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43364128	A	A	43364128	2	1	183	1	0	0	0	0	0	0	0	1	9340	1000	35	4		4	MAP3K14	17	43364128	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	906858	43364128	37831082	1002	147483											
PLEKHM1	9842	broad.mit.edu	37	chr17	43531202	43531202	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgggcggacgaccagtcAaactgtgtgccctggagggc	15	12	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43531202	T	T	43531202	3	4	183	1	0	0	0	0	1	0	0	0	12175	127	5	5	1178	5	PLEKHM1	17	43531202	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	167074	43531202	37664008	1003	147484											
CRHR1	1394	broad.mit.edu	37	chr17	43910948	43910948	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctccccctgatgaaacccCtgctccccatgcctctcacg	6	21	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43910948	G	G	43910948	1	3	183	0	1	0	0	0	0	0	0	0	3903	696	24	4		4	CRHR1	17	43910948	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	379746	43910948	37284262	1004	147485											
IMP5	162540	broad.mit.edu	37	chr17	43922293	43922293	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggcgtgcctgggcttcctCctccccgtgggcttcctcct	11	17	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43922293	T	T	43922293	2	4	183	1	0	0	0	0	0	0	0	1	7791	842	30	4		4	IMP5	17	43922293	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	11345	43922293	37272917	1005	147486											
MAPT	4137	broad.mit.edu	37	chr17	44067349	44067349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatccaaccctccagccctGctgtgtgcccagagccacct	8	18	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44067349	T	T	44067349	3	4	183	1	0	0	0	0	1	0	0	0	9389	1319	46	3	1314	3	MAPT	17	44067349	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	145056	44067349	37127861	1006	147487											
MYL4	4635	broad.mit.edu	37	chr17	45299253	45299253	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcagagatgaagaccaagTgggaggaatggaggggtggg	22	3	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45299253	A	A	45299253	1	1	183	0	1	0	0	0	0	0	0	0	10143	1711	59	5		5	MYL4	17	45299253	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1231904	45299253	35895957	1007	147488											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46050868	46050868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgggaatgctctaatttGggtgcttctcatgtagattg	12	5	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46050868	T	T	46050868	1	4	183	0	1	0	0	0	0	0	0	0	3177	1363	47	2		2	CDK5RAP3	17	46050868	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	751615	46050868	35144342	1008	147489											
NFE2L1	4779	broad.mit.edu	37	chr17	46133982	46133982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccatcgcccctgctcactGggctctcttcttgtccctac	6	18	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46133982	T	T	46133982	1	4	183	0	1	0	0	0	0	0	0	0	10462	1363	47	2		2	NFE2L1	17	46133982	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	83114	46133982	35061228	1009	147490											
LUC7L3	51747	broad.mit.edu	37	chr17	48817732	48817733	+	Intron	INS	-	C	C													tattttgcttgtcatttccaINScccccccagttattagttgg							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48817733	C	C	48817732	6	5	183	0	1	1	1	0	0	0	0	0	9171	174	6	0		0	LUC7L3	17	48817732	Intron	INS	-	TCGA-64-1676-01A-01W-0928-08	2683750	48817732	32377478	1010	147491											
KIF2B	84643	broad.mit.edu	37	chr17	51901354	51901354	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggagacttttcaggaacGgcccaagattgttctaaggg	14	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901354	T	T	51901354	2	4	183	1	0	0	0	0	0	0	0	1	8368	1103	39	1		1	KIF2B	17	51901354	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3083622	51901354	29293856	1011	147492											
VEZF1	7716	broad.mit.edu	37	chr17	56059122	56059122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcaaatgggccacatttaCtcaggtcagtgattttaaga	9	7	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56059122	A	A	56059122	1	1	183	0	1	0	0	0	0	0	0	0	17282	580	20	3		3	VEZF1	17	56059122	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	4157768	56059122	25136088	1012	147493											
PRR11	55771	broad.mit.edu	37	chr17	57252182	57252182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccacacccagtgctctgGgttataagcctggatctgga	11	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57252182	T	T	57252182	1	4	183	0	1	0	0	0	0	0	0	0	12689	1247	43	2		2	PRR11	17	57252182	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1193060	57252182	23943028	1013	147494											
INTS2	57508	broad.mit.edu	37	chr17	59947353	59947353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggacagctgcactatcctaTaagcaaacaaaacatagaaa	6	9	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59947353	A	A	59947353	1	1	183	0	1	0	0	0	0	0	0	0	7848	1421	49	5		5	INTS2	17	59947353	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	2695171	59947353	21247857	1014	147495											
DDX42	11325	broad.mit.edu	37	chr17	61864590	61864590	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagcttccttctttctacAaaattggatctaagcgggcc	7	12	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61864590	C	C	61864590	3	2	183	1	0	0	0	0	1	0	0	0	4395	131	5	5	183	5	DDX42	17	61864590	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	1917237	61864590	19330620	1015	147496											
SCN4A	6329	broad.mit.edu	37	chr17	62019252	62019252	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtccggatgcccttggcccCgcggatcagccgcaggacac	13	17	1	0	rs150423825	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62019252	T	T	62019252	3	4	183	1	0	0	0	0	1	0	0	0	14033	652	23	4	1124	4	SCN4A	17	62019252	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	154662	62019252	19175958	1016	147497											
TEX2	55852	broad.mit.edu	37	chr17	62230430	62230430	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttttaataaactctgtCtctgttgctttttggaaata	5	6	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62230430	G	G	62230430	3	3	183	1	0	0	0	0	1	0	0	0	15903	912	32	4	380	4	TEX2	17	62230430	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	211178	62230430	18964780	1017	147498											
LRRC37A3	374819	broad.mit.edu	37	chr17	62859212	62859212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaggaggcagccaacactAccacaggggtgggaaaaagg	14	8	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62859212	G	G	62859212	1	3	183	0	1	0	0	0	0	0	0	0	9080	406	14	5		5	LRRC37A3	17	62859212	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	628782	62859212	18335998	1018	147499											
WIPI1	55062	broad.mit.edu	37	chr17	66418073	66418073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagggagaggctgggcacTgtggaatttttctgtctgaa	15	6	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66418073	C	C	66418073	1	2	183	0	1	0	0	0	0	0	0	0	17497	1595	55	5		5	WIPI1	17	66418073	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	3558861	66418073	14777137	1019	147500											
ABCA10	10349	broad.mit.edu	37	chr17	67187504	67187504	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaattcttttccaacacCaccactcatgaaaagatagt	4	11	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67187504	A	A	67187504	1	1	183	0	1	0	0	0	0	0	0	0	29	609	21	2		2	ABCA10	17	67187504	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	769431	67187504	14007706	1020	147501											
ABCA10	10349	broad.mit.edu	37	chr17	67190582	67190582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagtgttgatttaccagctCcattatgcccaagtattgca	8	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67190582	A	A	67190582	3	1	183	1	0	0	0	0	1	0	0	0	29	855	30	3	3454	3	ABCA10	17	67190582	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3078	67190582	14004628	1021	147502											
DNAI2	64446	broad.mit.edu	37	chr17	72310218	72310218	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggagtggggaaggcctgtCccctaccaacaccaacactt	12	13	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72310218	A	A	72310218	1	1	183	0	1	0	0	0	0	0	0	0	4650	870	30	3		3	DNAI2	17	72310218	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	5119636	72310218	8884992	1022	147503											
CD300A	11314	broad.mit.edu	37	chr17	72477850	72477850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtggacacccacctgggacCtcctgcccacccaggctgcc	10	20	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72477850	A	A	72477850	1	1	183	0	1	0	0	0	0	0	0	0	3026	696	24	2		2	CD300A	17	72477850	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	167632	72477850	8717360	1023	147504											
GRIN2C	2905	broad.mit.edu	37	chr17	72842195	72842195	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcatcccagcaatggCagtacccaccgtcccccagg	10	18	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72842195	T	T	72842195	1	4	183	0	1	0	0	0	0	0	0	0	6847	725	25	4		4	GRIN2C	17	72842195	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	364345	72842195	8353015	1024	147505											
USP36	57602	broad.mit.edu	37	chr17	76815804	76815804	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcggcatctttagaacaggTatggtgtaaactgtagctat	11	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76815804	A	A	76815804	1	1	183	0	1	0	0	0	0	0	0	0	17194	1653	57	5		5	USP36	17	76815804	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	3973609	76815804	4379406	1025	147506											
COLEC12	81035	broad.mit.edu	37	chr18	319982	319982	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgagaaggtgatgcaattAgaaaggagtgtcctttgcct	13	5	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	319982	T	T	319982	1	4	183	0	1	0	0	0	0	0	0	0	3744	435	15	5		5	COLEC12	18	319982	3'UTR	SNP	A	TCGA-64-1676-01A-01W-0928-08		319982	77757266	1026	147507											
EPB41L3	23136	broad.mit.edu	37	chr18	5416157	5416157	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccccttgccagtttgctgtCtgtagctaaaagccacatct	7	13	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5416157	A	A	5416157	3	1	183	1	0	0	0	0	1	0	0	0	5196	913	32	3	1576	3	EPB41L3	18	5416157	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5096175	5416157	72661091	1027	147508											
LAMA1	284217	broad.mit.edu	37	chr18	7012196	7012196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagatgtgatttctgaaCaaacagagacaaaatagagc	9	5	1	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7012196	A	A	7012196	1	1	183	0	1	0	0	0	0	0	0	0	8677	493	17	3		3	LAMA1	18	7012196	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1596039	7012196	71065052	1028	147509											
C18orf1	753	broad.mit.edu	37	chr18	13645329	13645329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggaccctgaacagcagatGgaactcaaccgagagtccgt	12	12	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13645329	T	T	13645329	3	4	183	1	0	0	0	0	1	0	0	0	1912	1348	47	2	693	2	C18orf1	18	13645329	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6633133	13645329	64431919	1029	147510											
POTEC	388468	broad.mit.edu	37	chr18	14542565	14542565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcctccctccctgcgccaGgagggtatgtccccatcatc	9	18	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14542565	T	T	14542565	1	4	183	0	1	0	0	0	0	0	0	0	12358	1015	35	2		2	POTEC	18	14542565	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	897236	14542565	63534683	1030	147511											
ROCK1	6093	broad.mit.edu	37	chr18	18622649	18622649	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaggtgttccaaccgctgTatcacatcgtaccatgcctt	7	13	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18622649	C	C	18622649	3	2	183	1	0	0	0	0	1	0	0	0	13628	1638	57	5	3475	5	ROCK1	18	18622649	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	4080084	18622649	59454599	1031	147512											
LAMA3	3909	broad.mit.edu	37	chr18	21416983	21416983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgattgatcacatgagccGcatcgccatgtatgagctat	10	9	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21416983	T	T	21416983	3	4	183	1	0	0	0	0	1	0	0	0	8679	1087	38	3	3121	3	LAMA3	18	21416983	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2794334	21416983	56660265	1032	147513											
ZNF521	25925	broad.mit.edu	37	chr18	22671869	22671869	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttggtaggaaagacatgatGtggccatcagcctctcctgt	11	9	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22671869	C	C	22671869	1	2	183	0	1	0	0	0	0	0	0	0	18092	1392	48	4		4	ZNF521	18	22671869	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1254886	22671869	55405379	1033	147514											
ZNF521	25925	broad.mit.edu	37	chr18	22902056	22902056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgtcacagctgtgcaCagcttcgtcttccaactcct	8	15	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22902056	A	A	22902056	3	1	183	1	0	0	0	0	1	0	0	0	18092	478	17	3	3823	3	ZNF521	18	22902056	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	230187	22902056	55175192	1034	147515											
CHST9	83539	broad.mit.edu	37	chr18	24604116	24604116	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaagtacttcactggtcCccatcctgaaaaagaagagg	9	12	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24604116	T	T	24604116	3	4	183	1	0	0	0	0	1	0	0	0	3442	632	22	4	1177	4	CHST9	18	24604116	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1702060	24604116	53473132	1035	147516											
CDH2	1000	broad.mit.edu	37	chr18	25727729	25727729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcataatgcgatttcaCcagaagcctctacagacgcc	7	13	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25727729	A	A	25727729	3	1	183	1	0	0	0	0	1	0	0	0	3135	507	18	3	2700	3	CDH2	18	25727729	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1123613	25727729	52349519	1036	147517											
SLC39A6	25800	broad.mit.edu	37	chr18	33706321	33706321	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggagtggagctgcttacaTctttggggaagagttttcca	14	6	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33706321	A	A	33706321	3	1	183	1	0	0	0	0	1	0	0	0	14736	1435	50	5	1665	5	SLC39A6	18	33706321	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	7978592	33706321	44370927	1037	147518											
FHOD3	80206	broad.mit.edu	37	chr18	34349242	34349242	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaggatccactagttccTggactatgggaactgatgac	10	8	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34349242	A	A	34349242	3	1	183	1	0	0	0	0	1	0	0	0	5940	1580	55	5	4184	5	FHOD3	18	34349242	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	642921	34349242	43728006	1038	147519											
CELF4	56853	broad.mit.edu	37	chr18	34854816	34854816	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgatggcggcctgcgcctcGgcgtgggaggagtacttcac	16	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34854816	C	C	34854816	2	2	183	1	0	0	0	0	0	0	0	1	3248	1103	39	4		4	CELF4	18	34854816	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	505574	34854816	43222432	1039	147520											
PSTPIP2	9050	broad.mit.edu	37	chr18	43571960	43571960	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgatgggtgctaggagagtCaccaagaaacaggacatgaa	13	6	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43571960	A	A	43571960	1	1	183	0	1	0	0	0	0	0	0	0	12828	841	29	3		3	PSTPIP2	18	43571960	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8717144	43571960	34505288	1040	147521											
TCEB3C	162699	broad.mit.edu	37	chr18	44555227	44555227	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggcacctggagctggcaGgcaggcctggagcccgagta	17	12	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44555227	A	A	44555227	2	1	183	1	0	0	0	0	0	0	0	1	15805	987	35	4		4	TCEB3C	18	44555227	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	983267	44555227	33522021	1041	147522											
MAPK4	5596	broad.mit.edu	37	chr18	48248367	48248367	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatccctgtaatccgggagGaagacaaggacgagctgctc	12	12	0	1	rs66911538		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48248367	T	T	48248367	4	4	183	1	0	0	0	0	0	1	0	0	9372	1175	41	3	761	3	MAPK4	18	48248367	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3693140	48248367	29828881	1042	147523											
TCF4	6925	broad.mit.edu	37	chr18	53018255	53018255	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaaggttaaaaagggaaAacaaacatataaggttaatt	7	3	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53018255	T	T	53018255	1	4	183	0	1	0	0	0	0	0	0	0	15817	29	1	5		5	TCF4	18	53018255	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	4769888	53018255	25058993	1043	147524											
TCF4	6925	broad.mit.edu	37	chr18	53303413	53303413	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatgatcagaaaaagaaGgaagccgaagagaaagggat	13	3	1	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53303413	T	T	53303413	1	4	183	0	1	0	0	0	0	0	0	0	15817	1015	35	2		2	TCF4	18	53303413	5'Flank	SNP	G	TCGA-64-1676-01A-01W-0928-08	285158	53303413	24773835	1044	147525											
SERPINB2	5055	broad.mit.edu	37	chr18	61570386	61570386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtggatgtgaatgaggaGggcactgaagcagccgctgg	18	6	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61570386	T	T	61570386	3	4	183	1	0	0	0	0	1	0	0	0	14214	991	35	2	1121	2	SERPINB2	18	61570386	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8266973	61570386	16506862	1045	147526											
CDH7	1005	broad.mit.edu	37	chr18	63492141	63492141	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgatgggagaatgtactaGacaaaccgaatggccatatg	11	6	0	3	rs145943007	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63492141	T	T	63492141	1	4	183	0	1	0	0	0	0	0	0	0	3145	957	33	3		3	CDH7	18	63492141	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1921755	63492141	14585107	1046	147527											
CDH7	1005	broad.mit.edu	37	chr18	63511299	63511299	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattcttccaatagccctgtGaggtaaaaactcattgttgt	8	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63511299	C	C	63511299	2	2	183	1	0	0	0	0	0	0	0	1	3145	1277	45	4		4	CDH7	18	63511299	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	19158	63511299	14565949	1047	147528											
AP3D1	8943	broad.mit.edu	37	chr19	2127179	2127179	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acggtgttcacacattcataGaggagagacatggcagacgt	12	8	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2127179	A	A	2127179	2	1	183	1	0	0	0	0	0	0	0	1	748	929	33	4		4	AP3D1	19	2127179	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08		2127179	57001804	1048	147529											
MUC16	94025	broad.mit.edu	37	chr19	8962036	8962036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagaagggaaggtctggGgagacaagggctggggtgag	21	6	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8962036	T	T	8962036	1	4	183	0	1	0	0	0	0	0	0	0	10067	1247	43	2		2	MUC16	19	8962036	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	6834857	8962036	50166947	1049	147530											
MUC16	94025	broad.mit.edu	37	chr19	9009174	9009174	+	Intron	SNP	G	A	A													tgctgaaacccacctttggtGaggatatctctaggaagtgc							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009174	A	A	9009174	1	1	183	0	1	0	0	0	0	0	0	0	10067	1305	45	4		4	MUC16	19	9009174	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	47138	9009174	50119809	1050	147531	628	2									
MUC16	94025	broad.mit.edu	37	chr19	9009176	9009176	+	Intron	SNP	G	T	T													ctgaaacccacctttggtgaGgatatctctaggaagtgcag							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9009176	T	T	9009176	1	4	183	0	1	0	0	0	0	0	0	0	10067	1015	35	2		2	MUC16	19	9009176	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2	9009176	50119807	1051	147532	628	2									
MUC16	94025	broad.mit.edu	37	chr19	9020128	9020128	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggatgcagatggcatccActccagtggctgctccatcc	11	13	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9020128	T	T	9020128	3	4	183	1	0	0	0	0	1	0	0	0	10067	159	6	5	6412	5	MUC16	19	9020128	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	10952	9020128	50108855	1052	147533											
MUC16	94025	broad.mit.edu	37	chr19	9047436	9047436	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggttaccatatctggtacatCaggtgagacagttattgttg	11	6	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9047436	A	A	9047436	3	1	183	1	0	0	0	0	1	0	0	0	10067	826	29	3	9648	3	MUC16	19	9047436	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	27308	9047436	50081547	1053	147534											
LDLR	3949	broad.mit.edu	37	chr19	11213193	11213193	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagagacagggtttcactatAttggccaggctggtcttgaa	12	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11213193	G	G	11213193	1	3	183	0	1	0	0	0	0	0	0	0	8776	464	16	5		5	LDLR	19	11213193	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2165757	11213193	47915790	1054	147535											
ACP5	54	broad.mit.edu	37	chr19	11687570	11687570	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtatgcaatctgggcagagAcattgccaaggtggtcatgg	14	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11687570	T	T	11687570	3	4	183	1	0	0	0	0	1	0	0	0	164	275	10	5	639	5	ACP5	19	11687570	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	474377	11687570	47441413	1055	147536											
EMR2	30817	broad.mit.edu	37	chr19	14866330	14866330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgcttacccaaagccgGcttgggaaggactgactttc	11	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14866330	T	T	14866330	1	4	183	0	1	0	0	0	0	0	0	0	5147	1218	42	3		3	EMR2	19	14866330	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3178760	14866330	44262653	1056	147537											
CYP4F22	126410	broad.mit.edu	37	chr19	15636084	15636084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcactaggcacaccatGcattaccccatgggtcatcg	9	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15636084	T	T	15636084	1	4	183	0	1	0	0	0	0	0	0	0	4222	1334	46	3		3	CYP4F22	19	15636084	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	769754	15636084	43492899	1057	147538											
IL12RB1	3594	broad.mit.edu	37	chr19	18172011	18172011	+	Intron	SNP	G	T	T													acaggtgccgtgcggccctgGggaggaaaggggaccagtga							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18172011	T	T	18172011	1	4	183	0	1	0	0	0	0	0	0	0	7696	1247	43	2		2	IL12RB1	19	18172011	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2535927	18172011	40956972	1058	147539	629	2									
IL12RB1	3594	broad.mit.edu	37	chr19	18172013	18172013	+	Intron	SNP	G	T	T													aggtgccgtgcggccctgggGaggaaaggggaccagtgaga							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18172013	T	T	18172013	1	4	183	0	1	0	0	0	0	0	0	0	7696	1189	41	3		3	IL12RB1	19	18172013	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	2	18172013	40956970	1059	147540	629	2									
ZNF208	7757	broad.mit.edu	37	chr19	22154978	22154978	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttgaggatgacttatagGctttgccacatgcttcacat	11	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22154978	T	T	22154978	3	4	183	1	0	0	0	0	1	0	0	0	17892	1203	42	3	988	3	ZNF208	19	22154978	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3982965	22154978	36974005	1060	147541											
TMEM149	79713	broad.mit.edu	37	chr19	36230498	36230498	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctcatccaggaggcgagAcaggggttgtgacgccagac	15	11	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36230498	G	G	36230498	3	3	183	1	0	0	0	0	1	0	0	0	16185	275	10	5	320	5	TMEM149	19	36230498	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	14075520	36230498	22898485	1061	147542											
WDR62	284403	broad.mit.edu	37	chr19	36562436	36562436	+	Intron	DEL	G	-	-													cgtgaagcaccaaatccactGgggtcccttttgcccctaca							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36562436	-	-	36562436	6	5	183	0	1	1	0	1	0	0	0	0	17440	1363	47	0		0	WDR62	19	36562436	Intron	DEL	G	TCGA-64-1676-01A-01W-0928-08	331938	36562436	22566547	1062	147543											
ZNF570	148268	broad.mit.edu	37	chr19	37976118	37976118	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaccacccaacccagtcAatcaccaagtcctatagatc	4	16	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37976118	T	T	37976118	3	4	183	1	0	0	0	0	1	0	0	0	18129	130	5	5	1608	5	ZNF570	19	37976118	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	1413682	37976118	21152865	1063	147544											
RYR1	6261	broad.mit.edu	37	chr19	38976573	38976573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaatggtcacccccggCatggcctgccgggagttgga	14	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38976573	A	A	38976573	3	1	183	1	0	0	0	0	1	0	0	0	13879	710	25	3	5412	3	RYR1	19	38976573	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1000455	38976573	20152410	1064	147545											
CYP2F1	1572	broad.mit.edu	37	chr19	42028060	42028060	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagagcgaccagccacctcTgtctttcagctgcgttcact	8	16	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42028060	C	C	42028060	1	2	183	0	1	0	0	0	0	0	0	0	4204	1595	55	5		5	CYP2F1	19	42028060	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	3051487	42028060	17100923	1065	147546											
GRIK5	2901	broad.mit.edu	37	chr19	42526523	42526523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttctgctggaggggaagcCgggcaggggtggagggggac	22	8	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42526523	A	A	42526523	1	1	183	0	1	0	0	0	0	0	0	0	6843	667	23	1		1	GRIK5	19	42526523	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	498463	42526523	16602460	1066	147547											
TMEM145	284339	broad.mit.edu	37	chr19	42824406	42824406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacatggcaggcgaggtgGggctatagggtggggtggag	22	4	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42824406	T	T	42824406	1	4	183	0	1	0	0	0	0	0	0	0	16182	1247	43	2		2	TMEM145	19	42824406	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	297883	42824406	16304577	1067	147548											
PSG8	440533	broad.mit.edu	37	chr19	43261693	43261693	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaggagagcttggggacTtcccctgtatggtaataggt	15	7	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43261693	C	C	43261693	1	2	183	0	1	0	0	0	0	0	0	0	12767	1624	56	5		5	PSG8	19	43261693	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	437287	43261693	15867290	1068	147549											
PSG6	5675	broad.mit.edu	37	chr19	43421781	43421781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcagcctccctaagtgCtggcttcttttattttttag	6	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43421781	A	A	43421781	1	1	183	0	1	0	0	0	0	0	0	0	12765	812	28	3		3	PSG6	19	43421781	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	160088	43421781	15707202	1069	147550											
PSG6	5675	broad.mit.edu	37	chr19	43448774	43448774	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagttgcccaattctgggGcagtcaggtagagagcaaaa	12	7	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43448774	T	T	43448774	1	4	183	0	1	0	0	0	0	0	0	0	12765	1218	42	3		3	PSG6	19	43448774	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	26993	43448774	15680209	1070	147551											
TMEM143	55260	broad.mit.edu	37	chr19	48845927	48845927	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcatgaggttgagcagggCgcgctgcagggtgggcgtgc	20	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48845927	T	T	48845927	3	4	183	1	0	0	0	0	1	0	0	0	16180	768	27	4	556	4	TMEM143	19	48845927	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5397153	48845927	10283056	1071	147552											
GPR32	2854	broad.mit.edu	37	chr19	51274539	51274539	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctgggcttcctggggCccttagcaatcataggcacc	11	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51274539	T	T	51274539	3	4	183	1	0	0	0	0	1	0	0	0	6753	739	26	4	684	4	GPR32	19	51274539	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	2428612	51274539	7854444	1072	147553											
KLK15	55554	broad.mit.edu	37	chr19	51330233	51330233	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggtgggggcaacgcgtggGtagcaccgcggggcgcacct	20	12	0	0	rs7247190		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51330233	T	T	51330233	3	4	183	1	0	0	0	0	1	0	0	0	8474	1261	44	3	400	3	KLK15	19	51330233	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	55694	51330233	7798750	1073	147554											
NLRP12	91662	broad.mit.edu	37	chr19	54304586	54304586	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtccagctctctcaggctcTggttcacactgagagttgag	12	11	4	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54304586	C	C	54304586	3	2	183	1	0	0	0	0	1	0	0	0	10569	1580	55	5	550	5	NLRP12	19	54304586	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	2974353	54304586	4824397	1074	147555											
KIR3DL3	115653	broad.mit.edu	37	chr19	55247736	55247736	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagtctgcatcttagggCatcgctcttcctcacaccac	8	15	4	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55247736	T	T	55247736	1	4	183	0	1	0	0	0	0	0	0	0	8393	725	25	4		4	KIR3DL3	19	55247736	3'UTR	SNP	C	TCGA-64-1676-01A-01W-0928-08	943150	55247736	3881247	1075	147556											
NLRP4	147945	broad.mit.edu	37	chr19	56369712	56369712	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtttcttcaaagaccCgaaaagagccatggaagcct	9	11	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56369712	A	A	56369712	3	1	183	1	0	0	0	0	1	0	0	0	10574	652	23	1	959	1	NLRP4	19	56369712	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1121976	56369712	2759271	1076	147557											
PEG3	5178	broad.mit.edu	37	chr19	57333219	57333219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagccagctggggtgtgaGtgtatgagagcaagtgcctt	16	6	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57333219	T	T	57333219	1	4	183	0	1	0	0	0	0	0	0	0	11814	1044	36	3		3	PEG3	19	57333219	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	963507	57333219	1795764	1077	147558											
ZIM3	114026	broad.mit.edu	37	chr19	57646630	57646630	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactcataagctctcttccCagtgtgaattttctcatgat	5	11	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57646630	T	T	57646630	3	4	183	1	0	0	0	0	1	0	0	0	17811	594	21	4	347	4	ZIM3	19	57646630	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	313411	57646630	1482353	1078	147559											
PTPRA	5786	broad.mit.edu	37	chr20	2945550	2945550	+	Frame_Shift_Del	DEL	G	-	-													agattaattaactcatcaacGgcagaaccagttaaagaaga							TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2945550	-	-	2945550	7	5	183	1	0	1	0	1	0	0	0	0	12903	1103	39	0	123	0	PTPRA	20	2945550	Frame_Shift_Del	DEL	G	TCGA-64-1676-01A-01W-0928-08		2945550	60079970	1079	147560											
PROKR2	128674	broad.mit.edu	37	chr20	5294629	5294629	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgcaggtagttgacggaGgcacagagcacgtggccatg	17	9	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5294629	T	T	5294629	2	4	183	1	0	0	0	0	0	0	0	1	12659	987	35	2		2	PROKR2	20	5294629	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	2349079	5294629	57730891	1080	147561											
PLCB4	5332	broad.mit.edu	37	chr20	9457444	9457444	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagacgttgctttccttctcGactacgtccgtattctctgt	7	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9457444	T	T	9457444	1	4	183	0	1	0	0	0	0	0	0	0	12125	1073	37	3		3	PLCB4	20	9457444	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	4162815	9457444	53568076	1081	147562											
SEL1L2	80343	broad.mit.edu	37	chr20	13912364	13912364	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttattgattacattactagaTgttctttgttccaatatgtg	6	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13912364	A	A	13912364	2	1	183	1	0	0	0	0	0	0	0	1	14124	1451	51	5		5	SEL1L2	20	13912364	Silent	SNP	T	TCGA-64-1676-01A-01W-0928-08	4454920	13912364	49113156	1082	147563											
SLC24A3	57419	broad.mit.edu	37	chr20	19698032	19698032	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgtggagctggctgctgAagctgttgctttttcattct	12	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19698032	T	T	19698032	1	4	183	0	1	0	0	0	0	0	0	0	14581	261	9	5		5	SLC24A3	20	19698032	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	5785668	19698032	43327488	1083	147564											
C20orf26	26074	broad.mit.edu	37	chr20	20269349	20269349	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtcgacttgtgattgatAccaacttccacaccaacgac	6	13	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20269349	G	G	20269349	3	3	183	1	0	0	0	0	1	0	0	0	2128	391	14	5	3011	5	C20orf26	20	20269349	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	571317	20269349	42756171	1084	147565											
NAPB	63908	broad.mit.edu	37	chr20	23370621	23370621	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctttctggtactgctcaaGctgggcagcatatgctgcca	12	11	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23370621	C	C	23370621	3	2	183	1	0	0	0	0	1	0	0	0	10256	971	34	4	393	4	NAPB	20	23370621	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3101272	23370621	39654899	1085	147566											
REM1	28954	broad.mit.edu	37	chr20	30060819	30060819	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagcagctgtgtcatggCcacggggctcctggggaggc	17	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30060819	A	A	30060819	1	1	183	0	1	0	0	0	0	0	0	0	13330	754	26	3		3	REM1	20	30060819	5'Flank	SNP	C	TCGA-64-1676-01A-01W-0928-08	6690198	30060819	32964701	1086	147567											
DNMT3B	1789	broad.mit.edu	37	chr20	31383152	31383152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatagcatggtcttgtcctGggcccgcattctctctggac	11	13	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31383152	T	T	31383152	1	4	183	0	1	0	0	0	0	0	0	0	4717	1363	47	2		2	DNMT3B	20	31383152	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1322333	31383152	31642368	1087	147568											
SUN5	140732	broad.mit.edu	37	chr20	31587961	31587961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggaaggcagggagtggtGgtcaagatcaggtgggcaag	19	5	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31587961	T	T	31587961	1	4	183	0	1	0	0	0	0	0	0	0	15512	1363	47	2		2	SUN5	20	31587961	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	204809	31587961	31437559	1088	147569											
AHCY	191	broad.mit.edu	37	chr20	32878562	32878562	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggcagcctgcagtgcgttGatggggtcaatctcggtgat	15	8	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32878562	A	A	32878562	2	1	183	1	0	0	0	0	0	0	0	1	409	1280	45	4		4	AHCY	20	32878562	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	1290601	32878562	30146958	1089	147570											
PIGU	128869	broad.mit.edu	37	chr20	33225840	33225840	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacatgaaacaattcacttCccattgtttttatgctgaag	5	9	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33225840	A	A	33225840	1	1	183	0	1	0	0	0	0	0	0	0	11995	870	30	3		3	PIGU	20	33225840	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	347278	33225840	29799680	1090	147571											
PLCG1	5335	broad.mit.edu	37	chr20	39801184	39801184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcgactgcagctctcccGcatctaccccaagggccagc	8	18	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39801184	T	T	39801184	3	4	183	1	0	0	0	0	1	0	0	0	12130	1087	38	3	3131	3	PLCG1	20	39801184	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	6575344	39801184	23224336	1091	147572											
LPIN3	64900	broad.mit.edu	37	chr20	39985681	39985681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctttgtctggcctcagcGgcgcctgaacctgcaagaag	11	15	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39985681	T	T	39985681	3	4	183	1	0	0	0	0	1	0	0	0	9007	1130	39	1	1859	1	LPIN3	20	39985681	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	184497	39985681	23039839	1092	147573											
SGK2	10110	broad.mit.edu	37	chr20	42199282	42199282	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccacctgcagcgggagcGccggttcctggagccccggg	15	16	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42199282	A	A	42199282	3	1	183	1	0	0	0	0	1	0	0	0	14322	1087	38	4	588	4	SGK2	20	42199282	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2213601	42199282	20826238	1093	147574											
TOX2	84969	broad.mit.edu	37	chr20	42635213	42635213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggccagagcgagaacaaCgaagactatgagatcccccc	10	13	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42635213	A	A	42635213	3	1	183	1	0	0	0	0	1	0	0	0	16502	535	19	3	332	3	TOX2	20	42635213	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	435931	42635213	20390307	1094	147575											
R3HDML	140902	broad.mit.edu	37	chr20	42966067	42966067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaatacatggtgagtccCcgtacctgccccccaccccc	8	18	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42966067	A	A	42966067	1	1	183	0	1	0	0	0	0	0	0	0	12997	638	22	2		2	R3HDML	20	42966067	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	330854	42966067	20059453	1095	147576											
STK4	6789	broad.mit.edu	37	chr20	43624015	43624015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcactttgggaggctgaGgtggatggatcaccagaggt	16	8	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43624015	T	T	43624015	1	4	183	0	1	0	0	0	0	0	0	0	15424	1015	35	2		2	STK4	20	43624015	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	657948	43624015	19401505	1096	147577											
ZNF334	55713	broad.mit.edu	37	chr20	45131769	45131769	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacaattaacggtaattggTgagcctttatatgtttgcta	8	6	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45131769	C	C	45131769	1	2	183	0	1	0	0	0	0	0	0	0	17977	1711	59	5		5	ZNF334	20	45131769	Intron	SNP	T	TCGA-64-1676-01A-01W-0928-08	1507754	45131769	17893751	1097	147578											
NCOA3	8202	broad.mit.edu	37	chr20	46268485	46268485	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctgcactgggtggctctAttcccacattgcctcttcgg	10	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46268485	G	G	46268485	3	3	183	1	0	0	0	0	1	0	0	0	10325	449	16	5	2952	5	NCOA3	20	46268485	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	1136716	46268485	16757035	1098	147579											
SULF2	55959	broad.mit.edu	37	chr20	46313275	46313275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcatgggccccgtgtagCgcatgatccagtgtttgtcc	12	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46313275	A	A	46313275	3	1	183	1	0	0	0	0	1	0	0	0	15489	768	27	3	1888	3	SULF2	20	46313275	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	44790	46313275	16712245	1099	147580											
PREX1	57580	broad.mit.edu	37	chr20	47364417	47364417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggatgcgatgcaggaatgCctggaggagagaagcagaga	17	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47364417	A	A	47364417	3	1	183	1	0	0	0	0	1	0	0	0	12582	753	26	3	4915	3	PREX1	20	47364417	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1051142	47364417	15661103	1100	147581											
SLC9A8	23315	broad.mit.edu	37	chr20	48504417	48504417	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctcaccaacaagtggtacGaggaggtacgccagggcccc	12	14	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48504417	T	T	48504417	4	4	183	1	0	0	0	0	0	1	0	0	14834	1059	37	3	1752	3	SLC9A8	20	48504417	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1140000	48504417	14521103	1101	147582											
KCNG1	3755	broad.mit.edu	37	chr20	49626742	49626742	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatcctgcggccgcagcCgctgcgcccggcggtagaac	14	17	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49626742	A	A	49626742	3	1	183	1	0	0	0	0	1	0	0	0	8097	652	23	1	1415	1	KCNG1	20	49626742	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1122325	49626742	13398778	1102	147583											
SALL4	57167	broad.mit.edu	37	chr20	50407691	50407691	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgccactttgtcctggaacTcggcaaacagctgggggttt	12	12	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50407691	A	A	50407691	3	1	183	1	0	0	0	0	1	0	0	0	13924	1551	54	5	1842	5	SALL4	20	50407691	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	780949	50407691	12617829	1103	147584											
CTCFL	140690	broad.mit.edu	37	chr20	56078492	56078492	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgcgtaaaatcagtacCgtctccgttcgcggcttcct	8	13	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56078492	A	A	56078492	4	1	183	1	0	0	0	0	0	1	0	0	4035	666	23	1	159	1	CTCFL	20	56078492	Nonsense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	5670801	56078492	6947028	1104	147585											
ZNF831	128611	broad.mit.edu	37	chr20	57765944	57765944	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggggattgtcaggcttccGttgggtgatgaagtgcttgg	17	5	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57765944	T	T	57765944	1	4	183	0	1	0	0	0	0	0	0	0	18314	1160	40	3		3	ZNF831	20	57765944	5'Flank	SNP	G	TCGA-64-1676-01A-01W-0928-08	1687452	57765944	5259576	1105	147586											
SYCP2	10388	broad.mit.edu	37	chr20	58475035	58475035	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgctaagacacacactatCttttgtttgcatttgtcaaa	5	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58475035	G	G	58475035	1	3	183	0	1	0	0	0	0	0	0	0	15551	928	32	4		4	SYCP2	20	58475035	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	709091	58475035	4550485	1106	147587											
CDH26	60437	broad.mit.edu	37	chr20	58567503	58567503	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccggagtggtcatcaccgtgGagccaattgaccgagaatcc	12	12	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58567503	T	T	58567503	4	4	183	1	0	0	0	0	0	1	0	0	3140	1175	41	3	1392	3	CDH26	20	58567503	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	92468	58567503	4458017	1107	147588											
KCNQ2	3785	broad.mit.edu	37	chr20	62044883	62044883	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgacgtccatcacgtcgtaGggccgcaggctctccttgaa	11	13	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62044883	C	C	62044883	2	2	183	1	0	0	0	0	0	0	0	1	8153	987	35	4		4	KCNQ2	20	62044883	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3477380	62044883	980637	1108	147589											
KCNQ2	3785	broad.mit.edu	37	chr20	62073809	62073809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaagtggtcgttctcccCcttctctgccaagtacacca	7	15	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62073809	A	A	62073809	3	1	183	1	0	0	0	0	1	0	0	0	8153	623	22	2	1968	2	KCNQ2	20	62073809	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	28926	62073809	951711	1109	147590											
KCNQ2	3785	broad.mit.edu	37	chr20	62076556	62076556	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtccctgggtgcctggccCtgattctagcaataccaccc	9	17	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62076556	A	A	62076556	1	1	183	0	1	0	0	0	0	0	0	0	8153	696	24	2		2	KCNQ2	20	62076556	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2747	62076556	948964	1110	147591											
BAGE2	85319	broad.mit.edu	37	chr21	11026641	11026641	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattttgacctatttatatgActcatcaaaataacttgcta	3	8	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11026641	T	T	11026641	1	4	183	0	1	0	0	0	0	0	0	0	1297	290	10	5		5	BAGE2	21	11026641	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08		11026641	37103254	1111	147592											
BAGE2	85319	broad.mit.edu	37	chr21	11049684	11049684	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaattttttctgactacacAgtaaaatcatttgaaaggat	5	5	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11049684	T	T	11049684	1	4	183	0	1	0	0	0	0	0	0	0	1297	203	7	5		5	BAGE2	21	11049684	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	23043	11049684	37080211	1112	147593											
NCAM2	4685	broad.mit.edu	37	chr21	22849675	22849675	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataaagaccacatcattttgGagcatctccagtggaccatg	8	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22849675	T	T	22849675	4	4	183	1	0	0	0	0	0	1	0	0	10298	1175	41	3	2018	3	NCAM2	21	22849675	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	11799991	22849675	25280220	1113	147594											
MRPL39	54148	broad.mit.edu	37	chr21	26969716	26969716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcatcttttgtgaaggaaCgtaagttctccttaaaaatg	9	6	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26969716	A	A	26969716	3	1	183	1	0	0	0	0	1	0	0	0	9896	536	19	3	530	3	MRPL39	21	26969716	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	4120041	26969716	21160179	1114	147595											
JAM2	58494	broad.mit.edu	37	chr21	27062220	27062220	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccaaagaagactgtttcctCcagattagagtggaagaaac	9	9	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27062220	A	A	27062220	3	1	183	1	0	0	0	0	1	0	0	0	8013	855	30	3	186	3	JAM2	21	27062220	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	92504	27062220	21067675	1115	147596											
CYYR1	116159	broad.mit.edu	37	chr21	27841106	27841106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaccacatatgtatgaaaGggtaagtgctctaaaatgtg	11	5	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27841106	T	T	27841106	1	4	183	0	1	0	0	0	0	0	0	0	4244	1015	35	2		2	CYYR1	21	27841106	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	778886	27841106	20288789	1116	147597											
ADAMTS1	9510	broad.mit.edu	37	chr21	28209990	28209990	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agataacacccctccatcatGggacagacacttcaagcttc	6	14	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28209990	A	A	28209990	3	1	183	1	0	0	0	0	1	0	0	0	255	1348	47	4	95	4	ADAMTS1	21	28209990	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	368884	28209990	19919905	1117	147598											
ADAMTS5	11096	broad.mit.edu	37	chr21	28296585	28296585	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccatgactagtgacagaGtttacttttggagtggactt	11	7	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28296585	A	A	28296585	2	1	183	1	0	0	0	0	0	0	0	1	269	1020	36	4		4	ADAMTS5	21	28296585	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	86595	28296585	19833310	1118	147599											
KRTAP13-1	140258	broad.mit.edu	37	chr21	31768326	31768326	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccacggctgaacgtatatAaatggtcctgtccagatgtg	10	10	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31768326	C	C	31768326	1	2	183	0	1	0	0	0	0	0	0	0	8593	377	13	5		5	KRTAP13-1	21	31768326	5'Flank	SNP	A	TCGA-64-1676-01A-01W-0928-08	3471741	31768326	16361569	1119	147600											
KRTAP13-1	140258	broad.mit.edu	37	chr21	31768509	31768509	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctaccccagcaaccaggtCtacagcactgacctctgctc	6	18	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768509	T	T	31768509	2	4	183	1	0	0	0	0	0	0	0	1	8593	900	32	4		4	KRTAP13-1	21	31768509	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	183	31768509	16361386	1120	147601											
TIAM1	7074	broad.mit.edu	37	chr21	32525054	32525054	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaactctaccatttccGttaaatttccaaaaagcacg	4	11	1	1	rs148623159		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32525054	A	A	32525054	3	1	183	1	0	0	0	0	1	0	0	0	16013	1145	40	4	1549	4	TIAM1	21	32525054	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	756545	32525054	15604841	1121	147602											
GCFC1	94104	broad.mit.edu	37	chr21	34128537	34128537	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcaaatgctatgagactttCacgtaacactaatgaccact	5	10	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34128537	T	T	34128537	1	4	183	0	1	0	0	0	0	0	0	0	6351	841	29	4		4	GCFC1	21	34128537	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1603483	34128537	14001358	1122	147603											
RUNX1	861	broad.mit.edu	37	chr21	36259467	36259467	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctaccagacggcgacaggGgcgcggatcttcagcaagca	13	13	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36259467	A	A	36259467	1	1	183	0	1	0	0	0	0	0	0	0	13857	1247	43	4		4	RUNX1	21	36259467	5'UTR	SNP	G	TCGA-64-1676-01A-01W-0928-08	2130930	36259467	11870428	1123	147604											
PCBP3	54039	broad.mit.edu	37	chr21	47360037	47360037	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatcgccaacgccacggaaGggtcctcagagcgtcagatc	11	13	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47360037	A	A	47360037	3	1	183	1	0	0	0	0	1	0	0	0	11596	1000	35	4	1053	4	PCBP3	21	47360037	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	11100570	47360037	769858	1124	147605											
MICAL3	57553	broad.mit.edu	37	chr22	18463434	18463434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatcctcaggctgtcaaCatgcccttcatgcaacctac	6	15	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18463434	A	A	18463434	1	1	183	0	1	0	0	0	0	0	0	0	9664	493	17	3		3	MICAL3	22	18463434	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08		18463434	32841132	1125	147606											
KLHL22	84861	broad.mit.edu	37	chr22	20812279	20812279	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccagcggttgtgccgtGggtcatacctgtgccgagac	15	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20812279	A	A	20812279	3	1	183	1	0	0	0	0	1	0	0	0	8448	1348	47	4	795	4	KLHL22	22	20812279	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	2348845	20812279	30492287	1126	147607											
RGL4	266747	broad.mit.edu	37	chr22	24040541	24040541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagggcctagcccatgggCtgagggtgggagaaggctct	19	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24040541	A	A	24040541	1	1	183	0	1	0	0	0	0	0	0	0	13387	812	28	3		3	RGL4	22	24040541	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	3228262	24040541	27264025	1127	147608											
PIWIL3	440822	broad.mit.edu	37	chr22	25145401	25145401	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattgatgaattcttttaatGtatgatgccttcttcttgga	7	5	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25145401	A	A	25145401	3	1	183	1	0	0	0	0	1	0	0	0	12054	1377	48	4	1388	4	PIWIL3	22	25145401	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	1104860	25145401	26159165	1128	147609											
MYO18B	84700	broad.mit.edu	37	chr22	26163960	26163960	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttggatttggaggtgctcGagcatctgtggaaggatgaa	16	4	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26163960	T	T	26163960	1	4	183	0	1	0	0	0	0	0	0	0	10160	1073	37	3		3	MYO18B	22	26163960	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	1018559	26163960	25140606	1129	147610											
SEZ6L	23544	broad.mit.edu	37	chr22	26688319	26688319	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcagagtctgacagcagGtgaaggtcctaaatctcccc	9	14	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26688319	A	A	26688319	1	1	183	0	1	0	0	0	0	0	0	0	14256	1276	44	4		4	SEZ6L	22	26688319	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	524359	26688319	24616247	1130	147611											
SEZ6L	23544	broad.mit.edu	37	chr22	26702124	26702124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacaggtaaagctctgaaGgtccacacccaaccccgttt	9	13	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26702124	T	T	26702124	1	4	183	0	1	0	0	0	0	0	0	0	14256	1015	35	2		2	SEZ6L	22	26702124	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	13805	26702124	24602442	1131	147612											
CELSR1	9620	broad.mit.edu	37	chr22	46765042	46765042	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtctcagggcccagccgAcatggctggccggtcaggtt	17	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46765042	C	C	46765042	1	2	183	0	1	0	0	0	0	0	0	0	3251	290	10	5		5	CELSR1	22	46765042	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	20062918	46765042	4539524	1132	147613											
ALG12	79087	broad.mit.edu	37	chr22	50304192	50304192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccatggccccgaagtgcCgtctcacttccttttgtaac	7	16	1	0	rs117687848	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50304192	T	T	50304192	3	4	183	1	0	0	0	0	1	0	0	0	514	652	23	4	1135	4	ALG12	22	50304192	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	3539150	50304192	1000374	1133	147614											
SBF1	6305	broad.mit.edu	37	chr22	50900219	50900219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagccccaacggcccccGcaaaccttctggatgggcgg	12	18	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50900219	A	A	50900219	1	1	183	0	1	0	0	0	0	0	0	0	13970	1102	38	4		4	SBF1	22	50900219	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	596027	50900219	404347	1134	147615											
XG	7499	broad.mit.edu	37	chrX	2692691	2692691	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcatcagggcgttcatgGcctttcttcatgcttccaat	7	12	5	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2692691	T	T	2692691	1	4	183	0	1	0	0	0	0	0	0	0	17554	1218	42	3		3	XG	23	2692691	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08		2692691	152577869	1135	147616											
XG	7499	broad.mit.edu	37	chrX	2692794	2692794	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactcaggtgagtgtctcttCagctgggaaaaactgaggca	12	8	3	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2692794	T	T	2692794	1	4	183	0	1	0	0	0	0	0	0	0	17554	841	29	4		4	XG	23	2692794	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	103	2692794	152577766	1136	147617											
ARSH	347527	broad.mit.edu	37	chrX	2936699	2936699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggacaatgtagaagaaatgGattggatggtgggtaagtat	16	1	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2936699	T	T	2936699	3	4	183	1	0	0	0	0	1	0	0	0	997	1174	41	3	907	3	ARSH	23	2936699	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	243905	2936699	152333861	1137	147618											
MXRA5	25878	broad.mit.edu	37	chrX	3228247	3228247	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgtccaggagaaacgtcccTgcccagccccgggaggggtg	16	14	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3228247	A	A	3228247	3	1	183	1	0	0	0	0	1	0	0	0	10097	1580	55	5	493	5	MXRA5	23	3228247	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	291548	3228247	152042313	1138	147619											
MXRA5	25878	broad.mit.edu	37	chrX	3248432	3248432	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcactctcagcttgttGtagctgaacttgaaaacctg	9	9	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3248432	T	T	3248432	4	4	183	1	0	0	0	0	0	1	0	0	10097	1372	48	3	8166	3	MXRA5	23	3248432	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	20185	3248432	152022128	1139	147620											
FRMPD4	9758	broad.mit.edu	37	chrX	12734443	12734443	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccccctgtgaggcagactAcagaagtctagctcagcggt	13	12	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12734443	G	G	12734443	3	3	183	1	0	0	0	0	1	0	0	0	6119	391	14	5	1923	5	FRMPD4	23	12734443	Missense_Mutation	SNP	A	TCGA-64-1676-01A-01W-0928-08	9486011	12734443	142536117	1140	147621											
DDX53	168400	broad.mit.edu	37	chrX	23018528	23018528	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttattagaaaacaagaaagCtacaactcagaatccagtgt	6	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23018528	T	T	23018528	2	4	183	1	0	0	0	0	0	0	0	1	4404	796	28	4		4	DDX53	23	23018528	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	10284085	23018528	132252032	1141	147622											
MAGEB3	4114	broad.mit.edu	37	chrX	30254905	30254905	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaaccagcaagatgaaggtCctggagttttgggccaaggt	14	7	0	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30254905	T	T	30254905	2	4	183	1	0	0	0	0	0	0	0	1	9269	842	30	4		4	MAGEB3	23	30254905	Silent	SNP	C	TCGA-64-1676-01A-01W-0928-08	7236377	30254905	125015655	1142	147623											
RBM10	8241	broad.mit.edu	37	chrX	47032551	47032551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccagctgcagtcgcacGgcgtgcaagcacgggaggtt	17	11	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47032551	T	T	47032551	3	4	183	1	0	0	0	0	1	0	0	0	13219	1116	39	1	471	1	RBM10	23	47032551	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	16777646	47032551	108238009	1143	147624											
ARAF	369	broad.mit.edu	37	chrX	47426307	47426307	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggccagagtttcagcactGatggtgagtcccctgtgcct	12	12	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47426307	T	T	47426307	3	4	183	1	0	0	0	0	1	0	0	0	839	1290	45	3	750	3	ARAF	23	47426307	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	393756	47426307	107844253	1144	147625											
SSX1	6756	broad.mit.edu	37	chrX	48117035	48117035	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgggagaagctagggtaggtCccccatggtctctcagttag	14	10	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48117035	T	T	48117035	1	4	183	0	1	0	0	0	0	0	0	0	15321	870	30	4		4	SSX1	23	48117035	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	690728	48117035	107153525	1145	147626											
DGKK	139189	broad.mit.edu	37	chrX	50146203	50146203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaagggtaaaaagacaCaggaggtagaagttagagac	14	4	0	4			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50146203	A	A	50146203	1	1	183	0	1	0	0	0	0	0	0	0	4512	493	17	3		3	DGKK	23	50146203	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2029168	50146203	105124357	1146	147627											
DGKK	139189	broad.mit.edu	37	chrX	50163554	50163554	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccactccataactttgcCttcaaacacagtctgtgaac	4	14	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50163554	T	T	50163554	1	4	183	0	1	0	0	0	0	0	0	0	4512	696	24	4		4	DGKK	23	50163554	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	17351	50163554	105107006	1147	147628											
TRO	7216	broad.mit.edu	37	chrX	54955191	54955191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagctgtggctgggccctgGaattgggatgacatggatat	16	6	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54955191	T	T	54955191	3	4	183	1	0	0	0	0	1	0	0	0	16699	1183	41	3	2076	3	TRO	23	54955191	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	4791637	54955191	100315369	1148	147629											
MTMR8	55613	broad.mit.edu	37	chrX	63569783	63569783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaacaggtcttccagagCcatgtttaattatcattaga	6	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63569783	A	A	63569783	1	1	183	0	1	0	0	0	0	0	0	0	10043	754	26	3		3	MTMR8	23	63569783	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8614592	63569783	91700777	1149	147630											
PJA1	64219	broad.mit.edu	37	chrX	68381607	68381607	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcaaggttgttgtttccaTccagcatgaataccccaggt	8	11	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68381607	A	A	68381607	3	1	183	1	0	0	0	0	1	0	0	0	12056	1435	50	5	460	5	PJA1	23	68381607	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	4811824	68381607	86888953	1150	147631											
EDA	1896	broad.mit.edu	37	chrX	69157604	69157604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttgaagttcctggaggGtattctccttgctcatttat	9	8	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69157604	T	T	69157604	1	4	183	0	1	0	0	0	0	0	0	0	4943	1276	44	3		3	EDA	23	69157604	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	775997	69157604	86112956	1151	147632											
KIAA2022	340533	broad.mit.edu	37	chrX	73961382	73961382	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttaaggagcaataattacTtgagctgacagagagtgggg	14	5	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73961382	C	C	73961382	3	2	183	1	0	0	0	0	1	0	0	0	8339	1609	56	5	1548	5	KIAA2022	23	73961382	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	4803778	73961382	81309178	1152	147633											
ATP7A	538	broad.mit.edu	37	chrX	77245130	77245130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaaagcaatagaggctGtatcaccggggctatataga	12	6	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77245130	T	T	77245130	3	4	183	1	0	0	0	0	1	0	0	0	1194	1377	48	3	1022	3	ATP7A	23	77245130	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3283748	77245130	78025430	1153	147634											
PCDH11X	27328	broad.mit.edu	37	chrX	91131866	91131866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcaaaaggagttagatagGgaagagaaggatacctacgt	13	4	1	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91131866	T	T	91131866	3	4	183	1	0	0	0	0	1	0	0	0	11602	1223	43	2	633	2	PCDH11X	23	91131866	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	13886736	91131866	64138694	1154	147635											
PCDH11X	27328	broad.mit.edu	37	chrX	91873373	91873373	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatgccggcatctctggatCattccagctcttcgcaagca	10	13	3	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91873373	A	A	91873373	3	1	183	1	0	0	0	0	1	0	0	0	11602	826	29	3	3626	3	PCDH11X	23	91873373	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	741507	91873373	63397187	1155	147636											
BTK	695	broad.mit.edu	37	chrX	100617441	100617441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccaggaccctttgtttaGcacccaaagtgtacaacctt	6	15	0	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100617441	T	T	100617441	1	4	183	0	1	0	0	0	0	0	0	0	1567	986	34	3		3	BTK	23	100617441	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	8744068	100617441	54653119	1156	147637											
ZMAT1	84460	broad.mit.edu	37	chrX	101152935	101152935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctttcccacatagtgagaCtgagcaataagtggagagct	10	9	0	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101152935	A	A	101152935	3	1	183	1	0	0	0	0	1	0	0	0	17817	564	20	3	1517	3	ZMAT1	23	101152935	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	535494	101152935	54117625	1157	147638											
ZMAT1	84460	broad.mit.edu	37	chrX	101153123	101153123	+	Translation_Start_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacatgcatcttcattttcTtaccaggcacttcattttgt	4	11	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101153123	A	A	101153123	1	1	183	1	0	0	0	0	0	0	0	0	17817	1609	56	5		5	ZMAT1	23	101153123	Translation_Start_Site	SNP	T	TCGA-64-1676-01A-01W-0928-08	188	101153123	54117437	1158	147639											
TEX13A	56157	broad.mit.edu	37	chrX	104465059	104465059	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgccggaacccgctactgGggtcctcaggtctcaaggcc	12	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104465059	C	C	104465059	3	2	183	1	0	0	0	0	1	0	0	0	15898	1232	43	4	1216	4	TEX13A	23	104465059	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	3311936	104465059	50805501	1159	147640											
KIAA1210	57481	broad.mit.edu	37	chrX	118284406	118284406	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccaaagacaactgcaaCagccttgggaatacgctcga	8	12	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118284406	A	A	118284406	3	1	183	1	0	0	0	0	1	0	0	0	8284	478	17	3	5048	3	KIAA1210	23	118284406	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	13819347	118284406	36986154	1160	147641											
FAM70A	55026	broad.mit.edu	37	chrX	119407282	119407282	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtaagaagaaactgatgcCttagaatccagagtggtatc	11	6	0	5			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119407282	G	G	119407282	1	3	183	0	1	0	0	0	0	0	0	0	5656	696	24	4		4	FAM70A	23	119407282	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	1122876	119407282	35863278	1161	147642											
THOC2	57187	broad.mit.edu	37	chrX	122755273	122755273	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttcggcgttctttccttGgtctctcttgctttttcatc	7	12	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122755273	A	A	122755273	2	1	183	1	0	0	0	0	0	0	0	1	15988	1335	47	4		4	THOC2	23	122755273	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3347991	122755273	32515287	1162	147643											
OR13H1	347468	broad.mit.edu	37	chrX	130678094	130678094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcagtttctccttattgGcatttctaactatcctcaat	4	10	4	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130678094	T	T	130678094	3	4	183	1	0	0	0	0	1	0	0	0	11037	1203	42	3	49	3	OR13H1	23	130678094	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	7922821	130678094	24592466	1163	147644											
GPC4	2239	broad.mit.edu	37	chrX	132439938	132439938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttggggggtccacatccCtggaaaacctgcattagagt	13	10	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132439938	A	A	132439938	3	1	183	1	0	0	0	0	1	0	0	0	6665	680	24	2	669	2	GPC4	23	132439938	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1761844	132439938	22830622	1164	147645											
SAGE1	55511	broad.mit.edu	37	chrX	134992517	134992517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcatcagaggggtatgCctgtgcggttgacataatgc	14	8	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134992517	A	A	134992517	1	1	183	0	1	0	0	0	0	0	0	0	13920	754	26	3		3	SAGE1	23	134992517	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	2552579	134992517	20278043	1165	147646											
GPR112	139378	broad.mit.edu	37	chrX	135428122	135428122	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catccataaccaatatgcctGaatttaaacttaccacttta	2	11	0	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135428122	T	T	135428122	4	4	183	1	0	0	0	0	0	1	0	0	6694	1291	45	3	2267	3	GPR112	23	135428122	Nonsense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	435605	135428122	19842438	1166	147647											
GPR112	139378	broad.mit.edu	37	chrX	135443808	135443808	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatctacctaattggggaCatgtttctatgtcatttgtc	8	7	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135443808	T	T	135443808	1	4	183	0	1	0	0	0	0	0	0	0	6694	493	17	4		4	GPR112	23	135443808	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	15686	135443808	19826752	1167	147648											
CD40LG	959	broad.mit.edu	37	chrX	135730460	135730460	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctgcggccactggactgcCcatcagcatgaaaattttta	8	11	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135730460	G	G	135730460	3	3	183	1	0	0	0	0	1	0	0	0	3046	623	22	4	55	4	CD40LG	23	135730460	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	286652	135730460	19540100	1168	147649											
FGF13	2258	broad.mit.edu	37	chrX	137715045	137715045	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtggctcatggatttgcctCcgttcagcacgccagagaca	11	12	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137715045	G	G	137715045	3	3	183	1	0	0	0	0	1	0	0	0	5899	855	30	4	37	4	FGF13	23	137715045	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1984585	137715045	17555515	1169	147650											
MAGEC3	139081	broad.mit.edu	37	chrX	140969330	140969330	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcatcaacacatacacGggctactttcctatgatctt	5	11	3	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140969330	T	T	140969330	2	4	183	1	0	0	0	0	0	0	0	1	9274	1103	39	1		1	MAGEC3	23	140969330	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	3254285	140969330	14301230	1170	147651											
MAGEC3	139081	broad.mit.edu	37	chrX	140984396	140984396	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggatcccatcatccccatCcctgctcacacgtttacctg	6	17	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140984396	G	G	140984396	1	3	183	0	1	0	0	0	0	0	0	0	9274	870	30	4		4	MAGEC3	23	140984396	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	15066	140984396	14286164	1171	147652											
MAGEC3	139081	broad.mit.edu	37	chrX	140985421	140985421	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggggtccaagagcccattCagaggccagcaagagaagtc	14	10	1	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140985421	A	A	140985421	3	1	183	1	0	0	0	0	1	0	0	0	9274	839	29	3	2132	3	MAGEC3	23	140985421	Missense_Mutation	SNP	C	TCGA-64-1676-01A-01W-0928-08	1025	140985421	14285139	1172	147653											
SPANXN3	139067	broad.mit.edu	37	chrX	142596702	142596702	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctaggtcttcatcctccTgtgaggatccttcagatgag	10	11	3	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142596702	C	C	142596702	3	2	183	1	0	0	0	0	1	0	0	0	15108	1580	55	5	61	5	SPANXN3	23	142596702	Missense_Mutation	SNP	T	TCGA-64-1676-01A-01W-0928-08	1611281	142596702	12673858	1173	147654											
PASD1	139135	broad.mit.edu	37	chrX	150840994	150840994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcaaaacccacgtgacGtatctgtgcccctctgcaat	8	15	2	1	rs147522572	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150840994	T	T	150840994	3	4	183	1	0	0	0	0	1	0	0	0	11565	1145	40	3	1827	3	PASD1	23	150840994	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	8244292	150840994	4429566	1174	147655											
CNGA2	1260	broad.mit.edu	37	chrX	150912077	150912077	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcatctttgccaccatcGtgggaaatgtgggctccatg	10	12	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912077	A	A	150912077	3	1	183	1	0	0	0	0	1	0	0	0	3629	1145	40	4	1124	4	CNGA2	23	150912077	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	71083	150912077	4358483	1175	147656											
L1CAM	3897	broad.mit.edu	37	chrX	153137995	153137995	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtccagggaggcacaAggccggggtcagtggcaggc	19	10	1	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153137995	T	T	153137995	1	4	183	0	1	0	0	0	0	0	0	0	8660	87	3	5		5	L1CAM	23	153137995	Intron	SNP	A	TCGA-64-1676-01A-01W-0928-08	2225918	153137995	2132565	1176	147657											
HCFC1	3054	broad.mit.edu	37	chrX	153227748	153227748	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagactgggcttattccacGtcagggtgtctgcagagaga	14	8	2	3			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153227748	A	A	153227748	3	1	183	1	0	0	0	0	1	0	0	0	7057	1145	40	4	5473	4	HCFC1	23	153227748	Missense_Mutation	SNP	G	TCGA-64-1676-01A-01W-0928-08	89753	153227748	2042812	1177	147658											
EMD	2010	broad.mit.edu	37	chrX	153609287	153609287	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcctaccagagcatcacGcactaccgccctgtttcagc	8	16	2	1	rs151074632	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153609287	A	A	153609287	2	1	183	1	0	0	0	0	0	0	0	1	5129	1074	38	4		4	EMD	23	153609287	Silent	SNP	G	TCGA-64-1676-01A-01W-0928-08	381539	153609287	1661273	1178	147659											
CLIC2	1193	broad.mit.edu	37	chrX	154509358	154509358	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggactcaggtgagggtacCttaaaaagaaacatgcgtca	12	7	2	2			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154509358	G	G	154509358	5	3	183	1	0	0	0	0	0	0	1	0	3558	695	24	4	462	4	CLIC2	23	154509358	Splice_Site	SNP	C	TCGA-64-1676-01A-01W-0928-08	900071	154509358	761202	1179	147660											
PCDH11Y	83259	broad.mit.edu	37	chrY	5441303	5441303	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgtctatgcaggcgccGggggctctggttcccggatc	15	14	2	0			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5441303	A	A	5441303	1	1	183	0	1	0	0	0	0	0	0	0	11603	1131	39	4		4	PCDH11Y	24	5441303	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08		5441303	53932263	1180	147661											
PCDH11Y	83259	broad.mit.edu	37	chrY	5449876	5449876	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaccatcaccatgttgCatgtttcattttaaaatgaa	4	9	2	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5449876	G	G	5449876	1	3	183	0	1	0	0	0	0	0	0	0	11603	725	25	4		4	PCDH11Y	24	5449876	Intron	SNP	C	TCGA-64-1676-01A-01W-0928-08	8573	5449876	53923690	1181	147662											
TSPY1	7258	broad.mit.edu	37	chrY	9306516	9306516	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataagggggttgacacacctGcctattcagggagcctgggt	14	9	1	1			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9306516	C	C	9306516	1	2	183	0	1	0	0	0	0	0	0	0	16782	1334	46	4		4	TSPY1	24	9306516	Intron	SNP	G	TCGA-64-1676-01A-01W-0928-08	3856640	9306516	50067050	1182	147663											
GNB1	2782	broad.mit.edu	37	chr1	1749262	1749262	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagatggctctgcgtgactCagtgggctcttacctgagag	14	10	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1749262	A	A	1749262	1	1	184	0	1	0	0	0	0	0	0	0	6579	841	29	3		3	GNB1	1	1749262	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08		1749262	247501359	1	147664											
ENO1	2023	broad.mit.edu	37	chr1	8934896	8934896	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacataccttttgaggtgaaGagatcaacctcaacagtggg	10	9	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8934896	C	C	8934896	2	2	184	1	0	0	0	0	0	0	0	1	5163	929	33	4		4	ENO1	1	8934896	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	7185634	8934896	240315725	2	147665											
KIAA2013	90231	broad.mit.edu	37	chr1	11983606	11983606	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctgggaggcagagcatacGaaataaagaccaagggcagc	14	8	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11983606	A	A	11983606	1	1	184	0	1	0	0	0	0	0	0	0	8337	1073	37	4		4	KIAA2013	1	11983606	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	3048710	11983606	237267015	3	147666											
NBPF1	55672	broad.mit.edu	37	chr1	16890761	16890761	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actagatttcagaagtaacgTaaggaagtggtaagaaaaga	11	3	1	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16890761	A	A	16890761	1	1	184	0	1	0	0	0	0	0	0	0	10286	1653	57	5		5	NBPF1	1	16890761	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	4907155	16890761	232359860	4	147667											
C1QB	713	broad.mit.edu	37	chr1	22986043	22986043	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaggcccagctcagctgcAccgggcccccagccatccct	9	22	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22986043	C	C	22986043	3	2	184	1	0	0	0	0	1	0	0	0	1975	159	6	5	96	5	C1QB	1	22986043	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	6095282	22986043	226264578	5	147668											
FUCA1	2517	broad.mit.edu	37	chr1	24181064	24181064	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcatcctaaggagggaaaGaatatttggtcatgaggagt	12	6	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24181064	C	C	24181064	1	2	184	0	1	0	0	0	0	0	0	0	6154	957	33	4		4	FUCA1	1	24181064	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1195021	24181064	225069557	6	147669											
IQCC	55721	broad.mit.edu	37	chr1	32672200	32672200	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttcccatgtgaagagtctGagggagaggccacctgggag	15	9	1	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32672200	A	A	32672200	3	1	184	1	0	0	0	0	1	0	0	0	7874	1291	45	4	527	4	IQCC	1	32672200	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	8491136	32672200	216578421	7	147670											
CSMD2	114784	broad.mit.edu	37	chr1	33998577	33998577	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccttccttctcttttgccCtctttcagctcaagttcagc	4	15	5	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33998577	T	T	33998577	1	4	184	0	1	0	0	0	0	0	0	0	3979	696	24	4		4	CSMD2	1	33998577	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	1326377	33998577	215252044	8	147671											
GRIK3	2899	broad.mit.edu	37	chr1	37346391	37346391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccaacgcagctggatgtGgggcacctccagggcattgc	13	13	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37346391	T	T	37346391	3	4	184	1	0	0	0	0	1	0	0	0	6841	1348	47	2	2421	2	GRIK3	1	37346391	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3347814	37346391	211904230	9	147672											
INPP5B	3633	broad.mit.edu	37	chr1	38348602	38348602	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatcacactgtgaggacaGagcacaaaggtaacagggtt	12	7	1	3	rs147875109	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38348602	C	C	38348602	1	2	184	0	1	0	0	0	0	0	0	0	7825	957	33	4		4	INPP5B	1	38348602	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1002211	38348602	210902019	10	147673											
MFSD2A	84879	broad.mit.edu	37	chr1	40422655	40422655	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaacaggtcaaagcagagTtgtttgttctggtagagctg	14	5	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40422655	A	A	40422655	1	1	184	0	1	0	0	0	0	0	0	0	9623	1740	60	5		5	MFSD2A	1	40422655	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	2074053	40422655	208827966	11	147674											
WDR65	149465	broad.mit.edu	37	chr1	43650736	43650736	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtttctgtcacacccagtGacagtcttctttctcctccc	6	15	5	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43650736	A	A	43650736	1	1	184	0	1	0	0	0	0	0	0	0	17443	1305	45	4		4	WDR65	1	43650736	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	3228081	43650736	205599885	12	147675											
CYP4B1	1580	broad.mit.edu	37	chr1	47278291	47278291	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgagtctacacgtatcaTgctggtgagctccctgtgcc	10	13	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47278291	C	C	47278291	3	2	184	1	0	0	0	0	1	0	0	0	4218	1464	51	5	505	5	CYP4B1	1	47278291	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	3627555	47278291	201972330	13	147676											
NFIA	4774	broad.mit.edu	37	chr1	61818168	61818168	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatttttctctctcagatttGgaaagttcttcatactacag	5	8	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61818168	C	C	61818168	3	2	184	1	0	0	0	0	1	0	0	0	10465	1339	47	4	911	4	NFIA	1	61818168	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	14539877	61818168	187432453	14	147677											
ANKRD13C	81573	broad.mit.edu	37	chr1	70819665	70819665	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggctagcactcctcaccgtGattatctttctgcccgatat	8	13	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70819665	C	C	70819665	3	2	184	1	0	0	0	0	1	0	0	0	643	1290	45	4	1250	4	ANKRD13C	1	70819665	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	9001497	70819665	178430956	15	147678											
GIPC2	54810	broad.mit.edu	37	chr1	78509306	78509306	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaagagcctgaagcaattcCcagtgggctggtccagtggt	13	10	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78509306	G	G	78509306	1	3	184	0	1	0	0	0	0	0	0	0	6457	638	22	4		4	GIPC2	1	78509306	5'Flank	SNP	C	TCGA-64-1677-01A-01W-0928-08	7689641	78509306	170741315	16	147679											
ELTD1	64123	broad.mit.edu	37	chr1	79412033	79412033	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagccaggtacacacataCaataataacttccttctgtg	6	10	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79412033	T	T	79412033	3	4	184	1	0	0	0	0	1	0	0	0	5126	478	17	4	1873	4	ELTD1	1	79412033	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	902727	79412033	169838588	17	147680											
CLCA4	22802	broad.mit.edu	37	chr1	87018985	87018985	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggctccctccacgtcttccTggtggccaacacgtttcccc	9	18	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87018985	A	A	87018985	1	1	184	0	1	0	0	0	0	0	0	0	3490	1595	55	5		5	CLCA4	1	87018985	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	7606952	87018985	162231636	18	147681											
FNBP1L	54874	broad.mit.edu	37	chr1	93998699	93998699	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaagttagtgaaatgagttGagaaagggataaagtaatct	11	1	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93998699	T	T	93998699	1	4	184	0	1	0	0	0	0	0	0	0	6024	1305	45	3		3	FNBP1L	1	93998699	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	6979714	93998699	155251922	19	147682											
KIAA1324	57535	broad.mit.edu	37	chr1	109716178	109716178	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagtacccaagcctgtgcTggtgagaaacattgccataa	9	10	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109716178	C	C	109716178	3	2	184	1	0	0	0	0	1	0	0	0	8293	1580	55	5	801	5	KIAA1324	1	109716178	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	15717479	109716178	139534443	20	147683											
KIAA1324	57535	broad.mit.edu	37	chr1	109740087	109740087	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacttcttcctccccactcCccaaccagggtaggaaaatg	6	16	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109740087	T	T	109740087	1	4	184	0	1	0	0	0	0	0	0	0	8293	638	22	4		4	KIAA1324	1	109740087	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	23909	109740087	139510534	21	147684											
NBPF9	400818	broad.mit.edu	37	chr1	144168520	144168520	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacagtaccttggcttggctCttgacgtggatggtgagtac	13	8	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144168520	G	G	144168520	1	3	184	0	1	0	0	0	0	0	0	0	10294	928	32	4		4	NBPF9	1	144168520	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	34428433	144168520	105082101	22	147685											
TCHH	7062	broad.mit.edu	37	chr1	152083948	152083948	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgctggcgcctctcctccTcgcgcttcagcagctgatcg	11	17	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152083948	A	A	152083948	3	1	184	1	0	0	0	0	1	0	0	0	15822	1551	54	5	4090	5	TCHH	1	152083948	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	7915428	152083948	97166673	23	147686											
HRNR	388697	broad.mit.edu	37	chr1	152190895	152190895	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgggtagaggaatgaccTgagctagatccatgttgacc	12	9	0	5	rs144504025	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152190895	G	G	152190895	2	3	184	1	0	0	0	0	0	0	0	1	7426	1567	55	5		5	HRNR	1	152190895	Silent	SNP	T	TCGA-64-1677-01A-01W-0928-08	106947	152190895	97059726	24	147687											
FLG2	388698	broad.mit.edu	37	chr1	152323126	152323126	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttgcagtgctgtctgttGaccatgaaaggtgagaatta	12	5	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152323126	C	C	152323126	4	2	184	1	0	0	0	0	0	1	0	0	5980	1294	45	4	43	4	FLG2	1	152323126	Nonsense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	132231	152323126	96927495	25	147688											
S100A8	6279	broad.mit.edu	37	chr1	153362789	153362789	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccgaggcatagccatctatGaagggtggcagggaggaccg	17	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153362789	A	A	153362789	1	1	184	0	1	0	0	0	0	0	0	0	13897	1305	45	4		4	S100A8	1	153362789	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1039663	153362789	95887832	26	147689											
IL6R	3570	broad.mit.edu	37	chr1	154420621	154420621	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatccaggagtcctccagctGagaacgaggtgtccaccccc	10	15	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154420621	C	C	154420621	3	2	184	1	0	0	0	0	1	0	0	0	7772	1291	45	4	996	4	IL6R	1	154420621	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1057832	154420621	94830000	27	147690											
DCST2	127579	broad.mit.edu	37	chr1	154991264	154991264	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagaggaagggggtggccgGatcacccaccttctgtcttc	15	11	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154991264	A	A	154991264	1	1	184	0	1	0	0	0	0	0	0	0	4336	1189	41	4		4	DCST2	1	154991264	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	570643	154991264	94259357	28	147691											
DCST2	127579	broad.mit.edu	37	chr1	155001740	155001740	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctccccctgcagctggtgCcgggccaggtcaagcaccca	11	17	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155001740	T	T	155001740	2	4	184	1	0	0	0	0	0	0	0	1	4336	726	26	4		4	DCST2	1	155001740	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	10476	155001740	94248881	29	147692											
SCAMP3	10067	broad.mit.edu	37	chr1	155230148	155230148	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccccagggcagcatgctGcagctctcgctcccttcggt	11	18	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155230148	A	A	155230148	4	1	184	1	0	0	0	0	0	1	0	0	13984	1328	46	4	706	4	SCAMP3	1	155230148	Nonsense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	228408	155230148	94020473	30	147693											
FCRL3	115352	broad.mit.edu	37	chr1	157665172	157665172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccccaggccattgtctGcatcacaggagtagtttcca	11	13	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157665172	T	T	157665172	3	4	184	1	0	0	0	0	1	0	0	0	5853	1319	46	3	878	3	FCRL3	1	157665172	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2435024	157665172	91585449	31	147694											
FCRL3	115352	broad.mit.edu	37	chr1	157667220	157667220	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgtagaaacagctctaatGaaaagaaacaacatagtctc	7	7	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157667220	C	C	157667220	1	2	184	0	1	0	0	0	0	0	0	0	5853	1305	45	4		4	FCRL3	1	157667220	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2048	157667220	91583401	32	147695											
FCRL3	115352	broad.mit.edu	37	chr1	157668079	157668079	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtgcatcaatccccatgtCtgcttacaactctgcctagg	7	14	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157668079	A	A	157668079	1	1	184	0	1	0	0	0	0	0	0	0	5853	928	32	3		3	FCRL3	1	157668079	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	859	157668079	91582542	33	147696											
ATP1A4	480	broad.mit.edu	37	chr1	160141394	160141394	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctgcttcttgaatctGcctagcagcttctccaaggg	10	12	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160141394	C	C	160141394	2	2	184	1	0	0	0	0	0	0	0	1	1135	1306	46	4		4	ATP1A4	1	160141394	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	2473315	160141394	89109227	34	147697											
NOS1AP	9722	broad.mit.edu	37	chr1	162326690	162326690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgcatgccaaagagagGgaggcccctcaagatggctc	14	10	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162326690	T	T	162326690	1	4	184	0	1	0	0	0	0	0	0	0	10637	1247	43	2		2	NOS1AP	1	162326690	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2185296	162326690	86923931	35	147698											
RGS4	5999	broad.mit.edu	37	chr1	163043993	163043993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaccccaatgtcacttttGttttttgcttctgaaataca	6	9	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163043993	T	T	163043993	1	4	184	0	1	0	0	0	0	0	0	0	13416	1392	48	3		3	RGS4	1	163043993	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	717303	163043993	86206628	36	147699											
NUF2	83540	broad.mit.edu	37	chr1	163295790	163295790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgagaactactgatcatGtggtatttctcattgttttt	7	5	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163295790	T	T	163295790	1	4	184	0	1	0	0	0	0	0	0	0	10842	1392	48	3		3	NUF2	1	163295790	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	251797	163295790	85954831	37	147700											
MGST3	4259	broad.mit.edu	37	chr1	165620345	165620345	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtgtcggccctgccggGcaccaaagacatctgcagag	14	12	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165620345	A	A	165620345	1	1	184	0	1	0	0	0	0	0	0	0	9655	1218	42	4		4	MGST3	1	165620345	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2324555	165620345	83630276	38	147701											
C1orf49	84066	broad.mit.edu	37	chr1	178489899	178489899	+	Frame_Shift_Del	DEL	G	-	-													tcaggcccaagaaaatggatGgagccagtggagtcaatgga							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	178489899	-	-	178489899	7	5	184	1	0	1	0	1	0	0	0	0	2063	1349	47	0	483	0	C1orf49	1	178489899	Frame_Shift_Del	DEL	G	TCGA-64-1677-01A-01W-0928-08	12869554	178489899	70760722	39	147702											
RALGPS2	55103	broad.mit.edu	37	chr1	178745932	178745932	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aacgggcaggcaagcagtgtCaatattgcagctactgcttc	11	10	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178745932	G	G	178745932	2	3	184	1	0	0	0	0	0	0	0	1	13126	813	29	4		4	RALGPS2	1	178745932	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	256033	178745932	70504689	40	147703											
CEP350	9857	broad.mit.edu	37	chr1	180012116	180012116	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagtgatctttctttccaaGacactatgctccttctcagt	5	12	4	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180012116	C	C	180012116	1	2	184	0	1	0	0	0	0	0	0	0	3284	957	33	4		4	CEP350	1	180012116	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1266184	180012116	69238505	41	147704											
CACNA1E	777	broad.mit.edu	37	chr1	181731863	181731863	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaaaactcctctgtatAttcagtccatttttaaccca	2	10	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181731863	G	G	181731863	1	3	184	0	1	0	0	0	0	0	0	0	2568	464	16	5		5	CACNA1E	1	181731863	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	1719747	181731863	67518758	42	147705											
CACNA1E	777	broad.mit.edu	37	chr1	181732714	181732714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggttgtcatatcagacaGtacagccaggcaacactggc	12	10	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181732714	T	T	181732714	1	4	184	0	1	0	0	0	0	0	0	0	2568	1044	36	3		3	CACNA1E	1	181732714	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	851	181732714	67517907	43	147706											
FAM5C	339479	broad.mit.edu	37	chr1	190195450	190195450	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagaagtacttgaagcccTtgaagaacaaacaaagaaat	10	6	0	5			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190195450	A	A	190195450	5	1	184	1	0	0	0	0	0	0	1	0	5645	1623	56	5	1589	5	FAM5C	1	190195450	Splice_Site	SNP	T	TCGA-64-1677-01A-01W-0928-08	8462736	190195450	59055171	44	147707											
C1orf186	440712	broad.mit.edu	37	chr1	206241647	206241647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggaacctggagactggCcgctttcagtatctgttcac	11	12	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206241647	A	A	206241647	3	1	184	1	0	0	0	0	1	0	0	0	2040	739	26	3	388	3	C1orf186	1	206241647	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	16046197	206241647	43008974	45	147708											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209949129	209949129	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagggtatggggaggagGgatggtgatgaaagaagctg	20	2	0	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209949129	T	T	209949129	1	4	184	0	1	0	0	0	0	0	0	0	16566	1247	43	2		2	TRAF3IP3	1	209949129	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	3707482	209949129	39301492	46	147709											
C1orf74	148304	broad.mit.edu	37	chr1	209956824	209956824	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaatcatagagcacagcTggcttcagtccccgggccac	10	14	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209956824	A	A	209956824	2	1	184	1	0	0	0	0	0	0	0	1	2080	1567	55	5		5	C1orf74	1	209956824	Silent	SNP	T	TCGA-64-1677-01A-01W-0928-08	7695	209956824	39293797	47	147710											
USH2A	7399	broad.mit.edu	37	chr1	215853474	215853474	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaccaaacataatttcttaTgcagggtagacattacctta	5	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215853474	C	C	215853474	1	2	184	0	1	0	0	0	0	0	0	0	17162	1479	51	5		5	USH2A	1	215853474	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	5896650	215853474	33397147	48	147711											
ESRRG	2104	broad.mit.edu	37	chr1	216824354	216824354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaacacttcatgaagcGgcaagcctggcaggatttac	9	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216824354	T	T	216824354	3	4	184	1	0	0	0	0	1	0	0	0	5304	1116	39	1	846	1	ESRRG	1	216824354	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	970880	216824354	32426267	49	147712											
PARP1	142	broad.mit.edu	37	chr1	226550782	226550782	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcctcgggctgtagcaacaGctttggaaacactttacctt	9	11	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226550782	C	C	226550782	1	2	184	0	1	0	0	0	0	0	0	0	11548	986	34	4		4	PARP1	1	226550782	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	9726428	226550782	22699839	50	147713											
ABCB10	23456	broad.mit.edu	37	chr1	229683401	229683401	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaagcaacctcctgcctcaGaatggaggagaataatgaag	11	8	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229683401	C	C	229683401	3	2	184	1	0	0	0	0	1	0	0	0	41	933	33	4	1494	4	ABCB10	1	229683401	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3132619	229683401	19567220	51	147714											
HEATR1	55127	broad.mit.edu	37	chr1	236755306	236755306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacatacctgatactttcctCcacttgtagaaagagaaaca	5	10	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236755306	A	A	236755306	3	1	184	1	0	0	0	0	1	0	0	0	7094	855	30	3	5165	3	HEATR1	1	236755306	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	7071905	236755306	12495315	52	147715											
MTR	4548	broad.mit.edu	37	chr1	237023294	237023294	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcctgttgtgggcggtgtGacagtagctggagaaggaga	18	5	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237023294	A	A	237023294	1	1	184	0	1	0	0	0	0	0	0	0	10052	1305	45	4		4	MTR	1	237023294	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	267988	237023294	12227327	53	147716											
RYR2	6262	broad.mit.edu	37	chr1	237954725	237954725	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcataatgtttttcacccTcagaactattttgctcgcaa	4	10	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237954725	C	C	237954725	1	2	184	0	1	0	0	0	0	0	0	0	13880	1566	54	5		5	RYR2	1	237954725	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	931431	237954725	11295896	54	147717											
ZP4	57829	broad.mit.edu	37	chr1	238050909	238050909	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcatctctcccattgtgGggagaaccagatgaaagtct	11	9	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050909	A	A	238050909	1	1	184	0	1	0	0	0	0	0	0	0	18347	1247	43	4		4	ZP4	1	238050909	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	96184	238050909	11199712	55	147718											
WDR64	128025	broad.mit.edu	37	chr1	241959542	241959542	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgagtgtgtctcactgacTaatttatggcttccagatat	8	7	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241959542	A	A	241959542	1	1	184	0	1	0	0	0	0	0	0	0	17442	1537	53	5		5	WDR64	1	241959542	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	3908633	241959542	7291079	56	147719											
EFCAB2	84288	broad.mit.edu	37	chr1	245250111	245250111	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtgacttgctcaagatctCagagctcgtgagaggcagcc	12	10	2	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	245250111	G	G	245250111	1	3	184	0	1	0	0	0	0	0	0	0	4974	841	29	4		4	EFCAB2	1	245250111	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	3290569	245250111	4000510	57	147720											
OR2M4	26245	broad.mit.edu	37	chr1	248402705	248402705	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcttgatgggatcataGtgcttgcagctgtcctgtca	12	9	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248402705	A	A	248402705	3	1	184	1	0	0	0	0	1	0	0	0	11106	1029	36	4	477	4	OR2M4	1	248402705	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3152594	248402705	847916	58	147721											
OR2T4	127074	broad.mit.edu	37	chr1	248525348	248525348	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggcctatgaccgctacGtggccatctgccatcctctc	8	17	2	1	rs141849195	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525348	A	A	248525348	3	1	184	1	0	0	0	0	1	0	0	0	11121	1145	40	4	468	4	OR2T4	1	248525348	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	122643	248525348	725273	59	147722											
RAD51AP2	729475	broad.mit.edu	37	chr2	17699059	17699059	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagctttacatctgttcttAatttcatgaaatggtgattt	6	5	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17699059	T	T	17699059	2	4	184	1	0	0	0	0	0	0	0	1	13095	358	13	5		5	RAD51AP2	2	17699059	Silent	SNP	A	TCGA-64-1677-01A-01W-0928-08		17699059	225500314	60	147723											
DTNB	1838	broad.mit.edu	37	chr2	25610108	25610108	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggaagtgagaagggcgCgggcaaggcaggggaggcca	21	7	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25610108	T	T	25610108	1	4	184	0	1	0	0	0	0	0	0	0	4829	783	27	4		4	DTNB	2	25610108	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	7911049	25610108	217589265	61	147724											
C2orf39	92749	broad.mit.edu	37	chr2	26678013	26678013	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagccttgtcctgacccAgagggccaagctgctgctgg	12	14	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26678013	T	T	26678013	3	4	184	1	0	0	0	0	1	0	0	0	2186	188	7	5	2140	5	C2orf39	2	26678013	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	1067905	26678013	216521360	62	147725											
C2orf70	339778	broad.mit.edu	37	chr2	26799061	26799061	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtaagctgtgtggggctGccctgtggcctcccctcctg	14	14	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26799061	T	T	26799061	1	4	184	0	1	0	0	0	0	0	0	0	2212	1334	46	3		3	C2orf70	2	26799061	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	121048	26799061	216400312	63	147726											
ALK	238	broad.mit.edu	37	chr2	29498008	29498008	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttggtgaattttccccGggtttcagctccttgtttgg	11	9	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29498008	T	T	29498008	2	4	184	1	0	0	0	0	0	0	0	1	525	1103	39	1		1	ALK	2	29498008	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	2698947	29498008	213701365	64	147727											
SLC30A6	55676	broad.mit.edu	37	chr2	32422496	32422496	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttcatgatatgcataatTtaaaggaatacacaagaaat	6	4	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32422496	G	G	32422496	1	3	184	0	1	0	0	0	0	0	0	0	14673	1856	64	5		5	SLC30A6	2	32422496	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	2924488	32422496	210776877	65	147728											
LTBP1	4052	broad.mit.edu	37	chr2	33505282	33505282	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctgcatggcccattttctGatagagtggtgtaatgccaa	10	8	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33505282	A	A	33505282	1	1	184	0	1	0	0	0	0	0	0	0	9160	1305	45	4		4	LTBP1	2	33505282	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1082786	33505282	209694091	66	147729											
SOS1	6654	broad.mit.edu	37	chr2	39325479	39325479	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcttacaatacttttccttGagatttttctggaagcatgt	7	7	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39325479	C	C	39325479	1	2	184	0	1	0	0	0	0	0	0	0	15050	1305	45	4		4	SOS1	2	39325479	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	5820197	39325479	203873894	67	147730											
TTC7A	57217	broad.mit.edu	37	chr2	47221537	47221537	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggtcctgctgcactccctGagtgaggagtgctactggag	16	10	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47221537	A	A	47221537	2	1	184	1	0	0	0	0	0	0	0	1	16838	1277	45	4		4	TTC7A	2	47221537	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	7896058	47221537	195977836	68	147731											
WDR92	116143	broad.mit.edu	37	chr2	68358606	68358606	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatcaaaatggtaagagcGcataaatcttagctttcacc	7	8	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68358606	A	A	68358606	1	1	184	0	1	0	0	0	0	0	0	0	17466	1102	38	4		4	WDR92	2	68358606	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	21137069	68358606	174840767	69	147732											
GFPT1	2673	broad.mit.edu	37	chr2	69573156	69573156	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaatagaaatcacataatTaaaacaaaaacaaatcaaat	2	5	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69573156	A	A	69573156	1	1	184	0	1	0	0	0	0	0	0	0	6409	1769	61	5		5	GFPT1	2	69573156	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	1214550	69573156	173626217	70	147733											
DYSF	8291	broad.mit.edu	37	chr2	71839841	71839841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgataaccgccagtttggccGccggcctgtggtgggccagt	15	13	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71839841	T	T	71839841	3	4	184	1	0	0	0	0	1	0	0	0	4899	1087	38	3	4584	3	DYSF	2	71839841	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2266685	71839841	171359532	71	147734											
LRRTM4	80059	broad.mit.edu	37	chr2	77745477	77745477	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccagagatggtatatgtGcagggcccagatccattaac	12	9	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745477	A	A	77745477	2	1	184	1	0	0	0	0	0	0	0	1	9129	1311	46	4		4	LRRTM4	2	77745477	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	5905636	77745477	165453896	72	147735											
UXS1	80146	broad.mit.edu	37	chr2	106761628	106761628	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagctctgaataataacaaTgtgcagttttcactcaccct	7	10	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106761628	C	C	106761628	1	2	184	0	1	0	0	0	0	0	0	0	17236	1479	51	5		5	UXS1	2	106761628	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	29016151	106761628	136437745	73	147736											
GPR148	344561	broad.mit.edu	37	chr2	131486979	131486979	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctgcgacaggagccccaCtacctgctcccggctaacat	10	17	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131486979	A	A	131486979	3	1	184	1	0	0	0	0	1	0	0	0	6718	564	20	3	257	3	GPR148	2	131486979	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	24725351	131486979	111712394	74	147737											
LRP1B	53353	broad.mit.edu	37	chr2	141299477	141299477	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcttccccagtccgaccAgaatatataattgtcataaa	4	11	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141299477	G	G	141299477	3	3	184	1	0	0	0	0	1	0	0	0	9042	188	7	5	6733	5	LRP1B	2	141299477	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	9812498	141299477	101899896	75	147738											
GPD2	2820	broad.mit.edu	37	chr2	157367459	157367459	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatgctggttgttaaacAaaaattgcaactgtgctttt	9	5	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157367459	G	G	157367459	1	3	184	0	1	0	0	0	0	0	0	0	6671	145	5	5		5	GPD2	2	157367459	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	16067982	157367459	85831914	76	147739											
TANC1	85461	broad.mit.edu	37	chr2	160051028	160051028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggcagcctgctcttttgGggctggggcagggaaatggc	18	9	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160051028	T	T	160051028	1	4	184	0	1	0	0	0	0	0	0	0	15663	1247	43	2		2	TANC1	2	160051028	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2683569	160051028	83148345	77	147740											
TBR1	10716	broad.mit.edu	37	chr2	162273111	162273111	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggggatgacgaatcagtcaGatacagacaattttcctgac	11	8	2	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162273111	C	C	162273111	3	2	184	1	0	0	0	0	1	0	0	0	15769	942	33	4	192	4	TBR1	2	162273111	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2222083	162273111	80926262	78	147741											
SCN3A	6328	broad.mit.edu	37	chr2	166019346	166019346	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtctttaaacctgcagaGagagaactataggttacctg	10	7	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166019346	C	C	166019346	1	2	184	0	1	0	0	0	0	0	0	0	14031	957	33	4		4	SCN3A	2	166019346	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	3746235	166019346	77180027	79	147742											
PDE11A	50940	broad.mit.edu	37	chr2	178762821	178762821	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaggagtaaaacagaacaGcgttcacatttcagcagagt	9	8	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178762821	A	A	178762821	2	1	184	1	0	0	0	0	0	0	0	1	11725	958	34	4		4	PDE11A	2	178762821	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	12743475	178762821	64436552	80	147743											
ZC3H15	55854	broad.mit.edu	37	chr2	187370372	187370372	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttattcttccattttcaAtttctgtgtcatgcaagatt	4	8	5	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187370372	C	C	187370372	1	2	184	0	1	0	0	0	0	0	0	0	17693	116	4	5		5	ZC3H15	2	187370372	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	8607551	187370372	55829001	81	147744											
DNAH7	56171	broad.mit.edu	37	chr2	196866436	196866436	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtccgtgaaatcttgcatgGagactaaagtgaggtcctgc	12	8	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196866436	A	A	196866436	3	1	184	1	0	0	0	0	1	0	0	0	4646	1174	41	4	11158	4	DNAH7	2	196866436	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	9496064	196866436	46332937	82	147745											
CCDC150	284992	broad.mit.edu	37	chr2	197531457	197531457	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggtgcacattttgcaGcaaaactgcattgctctacg	8	10	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197531457	C	C	197531457	3	2	184	1	0	0	0	0	1	0	0	0	2811	962	34	4	803	4	CCDC150	2	197531457	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	665021	197531457	45667916	83	147746											
FAM126B	285172	broad.mit.edu	37	chr2	201927764	201927764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttctcctttctgcccgtGgacgccgccgaagaagcatc	9	15	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201927764	A	A	201927764	1	1	184	0	1	0	0	0	0	0	0	0	5476	1363	47	4		4	FAM126B	2	201927764	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	4396307	201927764	41271609	84	147747											
ADAM23	8745	broad.mit.edu	37	chr2	207482245	207482245	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccattctgtcatcatcatctGattaatattgtggattttcc	5	9	5	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207482245	C	C	207482245	1	2	184	0	1	0	0	0	0	0	0	0	245	1305	45	4		4	ADAM23	2	207482245	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	5554481	207482245	35717128	85	147748											
CPS1	1373	broad.mit.edu	37	chr2	211518752	211518752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttttccttcgtgacaggagCacccagtggtgctgacaaaa	11	10	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211518752	T	T	211518752	3	4	184	1	0	0	0	0	1	0	0	0	3855	710	25	4	3620	4	CPS1	2	211518752	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	4036507	211518752	31680621	86	147749											
SP140	11262	broad.mit.edu	37	chr2	231117274	231117274	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtgtcaagcatgaaaatGagagtgccaacatggggtgg	14	6	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231117274	A	A	231117274	1	1	184	0	1	0	0	0	0	0	0	0	15076	1305	45	4		4	SP140	2	231117274	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	19598522	231117274	12082099	87	147750											
IQCA1	79781	broad.mit.edu	37	chr2	237272693	237272693	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcttcaactaggataactCaaggtcaaaactgcatcgtg	8	9	4	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237272693	G	G	237272693	1	3	184	0	1	0	0	0	0	0	0	0	7872	841	29	4		4	IQCA1	2	237272693	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	6155419	237272693	5926680	88	147751											
PRR21	643905	broad.mit.edu	37	chr2	240982137	240982137	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgggtgaagaggcatggatGaaggactgtgggtgaagagc	20	3	0	5			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240982137	A	A	240982137	3	1	184	1	0	0	0	0	1	0	0	0	12698	1294	45	4	909	4	PRR21	2	240982137	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3709444	240982137	2217236	89	147752											
STK25	10494	broad.mit.edu	37	chr2	242438432	242438432	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctttgttgaggcaggccTccacgaactccttgaagggc	13	11	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242438432	A	A	242438432	3	1	184	1	0	0	0	0	1	0	0	0	15412	1551	54	5	561	5	STK25	2	242438432	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	1456295	242438432	760941	90	147753											
ZNF167	55888	broad.mit.edu	37	chr3	44621874	44621874	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactctgagctggactcagActgctgccatctggctggtc	13	12	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44621874	G	G	44621874	1	3	184	0	1	0	0	0	0	0	0	0	17867	290	10	5		5	ZNF167	3	44621874	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08		44621874	153400556	91	147754											
ZNF167	55888	broad.mit.edu	37	chr3	44621983	44621983	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgGtggtaacagccaccttggca	13	12	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44621983	C	C	44621983	1	2	184	0	1	0	0	0	0	0	0	0	17867	1276	44	4		4	ZNF167	3	44621983	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	109	44621983	153400447	92	147755											
SCAP	22937	broad.mit.edu	37	chr3	47468562	47468562	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtttccagggggcattcaGaacactctaaccagaagagg	11	9	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47468562	C	C	47468562	1	2	184	0	1	0	0	0	0	0	0	0	13989	957	33	4		4	SCAP	3	47468562	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2846579	47468562	150553868	93	147756											
CSPG5	10675	broad.mit.edu	37	chr3	47610668	47610668	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagagccctcggcaatggTggagagggagaagttatcat	16	6	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47610668	C	C	47610668	3	2	184	1	0	0	0	0	1	0	0	0	3995	1696	59	5	195	5	CSPG5	3	47610668	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	142106	47610668	150411762	94	147757											
SLMAP	7871	broad.mit.edu	37	chr3	57850452	57850452	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctttacaaggtaagtagCtaatccagaaattgatttta	7	6	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57850452	G	G	57850452	1	3	184	0	1	0	0	0	0	0	0	0	14863	812	28	4		4	SLMAP	3	57850452	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	10239784	57850452	140171978	95	147758											
CADPS	8618	broad.mit.edu	37	chr3	62503733	62503733	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatatccaatgtatcctctGgtagatttacagttttggaa	7	6	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62503733	C	C	62503733	1	2	184	0	1	0	0	0	0	0	0	0	2596	1363	47	4		4	CADPS	3	62503733	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	4653281	62503733	135518697	96	147759											
SLC9A10	285335	broad.mit.edu	37	chr3	111870756	111870756	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacagttgaactttgtccCcagcagggagcaaggctggg	13	10	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111870756	A	A	111870756	3	1	184	1	0	0	0	0	1	0	0	0	14824	623	22	2	69	2	SLC9A10	3	111870756	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	49367023	111870756	86151674	97	147760											
SLC35A5	55032	broad.mit.edu	37	chr3	112299565	112299565	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagaagtgagtgtcccAgaaaagacaattgtacagca	9	7	1	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112299565	G	G	112299565	3	3	184	1	0	0	0	0	1	0	0	0	14688	180	7	5	619	5	SLC35A5	3	112299565	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	428809	112299565	85722865	98	147761											
ZDHHC23	254887	broad.mit.edu	37	chr3	113673059	113673059	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagaccaaagggttccCtggggcagacatgtcgggca	16	9	0	3	rs147787442		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113673059	T	T	113673059	3	4	184	1	0	0	0	0	1	0	0	0	17740	681	24	4	680	4	ZDHHC23	3	113673059	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	1373494	113673059	84349371	99	147762											
PLA1A	51365	broad.mit.edu	37	chr3	119327819	119327819	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagaagagcttagggtgAgtttgggctgcgtatgagga	18	4	0	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119327819	G	G	119327819	1	3	184	0	1	0	0	0	0	0	0	0	12083	319	11	5		5	PLA1A	3	119327819	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	5654760	119327819	78694611	100	147763											
SLC15A2	6565	broad.mit.edu	37	chr3	121648154	121648154	+	Frame_Shift_Del	DEL	G	-	-													tttcctctgttgtaggtaaaGgatacagaaagcagaacaac							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121648154	-	-	121648154	7	5	184	1	0	1	0	1	0	0	0	0	14512	991	35	0	1578	0	SLC15A2	3	121648154	Frame_Shift_Del	DEL	G	TCGA-64-1677-01A-01W-0928-08	2320335	121648154	76374276	101	147764											
ATR	545	broad.mit.edu	37	chr3	142170968	142170968	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaagaagcagctaaaccttCtttctcaagacaaagggtta	7	8	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142170968	G	G	142170968	1	3	184	0	1	0	0	0	0	0	0	0	1208	928	32	4		4	ATR	3	142170968	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	20522814	142170968	55851462	102	147765											
ATR	545	broad.mit.edu	37	chr3	142171996	142171996	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgacaacttctccagtttCattcagtggcgctttggaat	8	9	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142171996	T	T	142171996	3	4	184	1	0	0	0	0	1	0	0	0	1208	835	29	4	207	4	ATR	3	142171996	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	1028	142171996	55850434	103	147766											
PCOLCE2	26577	broad.mit.edu	37	chr3	142546379	142546379	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccaggcagcacacgatcAtaccctcaggcatggtgccc	9	17	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142546379	T	T	142546379	1	4	184	0	1	0	0	0	0	0	0	0	11689	232	8	5		5	PCOLCE2	3	142546379	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	374383	142546379	55476051	104	147767											
PLOD2	5352	broad.mit.edu	37	chr3	145799492	145799492	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatctttagattatggtaTttcacattaaaatattaaac	3	5	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145799492	A	A	145799492	1	1	184	0	1	0	0	0	0	0	0	0	12197	1508	52	5		5	PLOD2	3	145799492	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	3253113	145799492	52222938	105	147768											
IGSF10	285313	broad.mit.edu	37	chr3	151164737	151164737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccaattttcctctgcctcCcaaagcgtctgaacagcggg	9	15	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151164737	A	A	151164737	3	1	184	1	0	0	0	0	1	0	0	0	7667	623	22	2	4899	2	IGSF10	3	151164737	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	5365245	151164737	46857693	106	147769											
MLF1	4291	broad.mit.edu	37	chr3	158311211	158311211	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttttggcgattttggtgGtatggttcgtatcttaagac	12	6	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158311211	A	A	158311211	1	1	184	0	1	0	0	0	0	0	0	0	9707	1276	44	4		4	MLF1	3	158311211	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	7146474	158311211	39711219	107	147770											
GFM1	85476	broad.mit.edu	37	chr3	158402288	158402288	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtaaaatccactcactccAgaagttgtgttcattcatta	5	9	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158402288	T	T	158402288	1	4	184	0	1	0	0	0	0	0	0	0	6405	203	7	5		5	GFM1	3	158402288	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	91077	158402288	39620142	108	147771											
MECOM	2122	broad.mit.edu	37	chr3	168867383	168867383	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacagctctgccttccgcctCgcccgccgttccgcgtcctt	8	21	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168867383	T	T	168867383	1	4	184	0	1	0	0	0	0	0	0	0	9515	899	31	4		4	MECOM	3	168867383	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	10465095	168867383	29155047	109	147772											
PHC3	80012	broad.mit.edu	37	chr3	169899448	169899449	+	Intron	INS	-	C	C													cgtgtcgctgccccaactcgINSccccccctagttacgacatc							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169899449	C	C	169899448	6	5	184	0	1	1	1	0	0	0	0	0	11913	1102	38	0		0	PHC3	3	169899448	Intron	INS	-	TCGA-64-1677-01A-01W-0928-08	1032065	169899448	28122982	110	147773											
GHSR	2693	broad.mit.edu	37	chr3	172165759	172165759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaccaccttggcccggaGtgggaagcagatggcgaagt	15	11	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172165759	T	T	172165759	3	4	184	1	0	0	0	0	1	0	0	0	6439	1029	36	3	737	3	GHSR	3	172165759	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2266311	172165759	25856671	111	147774											
PIK3CA	5290	broad.mit.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4	rs104886003		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178936091	A	A	178936091	3	1	184	1	0	0	0	0	1	0	0	0	12008	1291	45	4	1667	4	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	6770332	178936091	19086339	112	147775											
MAEA	10296	broad.mit.edu	37	chr4	1309203	1309203	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcggtggaatccatccagGccgaggacgagagcgccaag	16	11	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1309203	A	A	1309203	3	1	184	1	0	0	0	0	1	0	0	0	9241	1203	42	4	281	4	MAEA	4	1309203	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08		1309203	189845073	113	147776											
RPL9	6133	broad.mit.edu	37	chr4	39459305	39459305	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttgtcaacccggagctgTaacagaacaaaaaatgtatt	7	8	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39459305	A	A	39459305	1	1	184	0	1	0	0	0	0	0	0	0	13714	1653	57	5		5	RPL9	4	39459305	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	38150102	39459305	151694971	114	147777											
GABRA2	2555	broad.mit.edu	37	chr4	46314600	46314600	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctactgattttttcccaTtgtgaaaaaaggtatctgga	9	6	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46314600	G	G	46314600	3	3	184	1	0	0	0	0	1	0	0	0	6221	1493	52	5	990	5	GABRA2	4	46314600	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	6855295	46314600	144839676	115	147778											
LPHN3	23284	broad.mit.edu	37	chr4	62812790	62812790	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caataaacaaagagttcagtAacaaggtttatttggctgat	8	5	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62812790	C	C	62812790	3	2	184	1	0	0	0	0	1	0	0	0	9004	362	13	5	2424	5	LPHN3	4	62812790	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	16498190	62812790	128341486	116	147779											
FRAS1	80144	broad.mit.edu	37	chr4	79351417	79351417	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttaacatacgctttctctCtcaccacgcttccttctcct	2	17	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79351417	T	T	79351417	1	4	184	0	1	0	0	0	0	0	0	0	6102	928	32	4		4	FRAS1	4	79351417	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	16538627	79351417	111802859	117	147780											
HELQ	113510	broad.mit.edu	37	chr4	84352854	84352854	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagaaataatgtttggattCccttggtgaattcctgaaca	9	6	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84352854	T	T	84352854	3	4	184	1	0	0	0	0	1	0	0	0	7114	855	30	4	1079	4	HELQ	4	84352854	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	5001437	84352854	106801422	118	147781											
FAM13A	10144	broad.mit.edu	37	chr4	89660173	89660173	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accagccacgggaaggtattCtactcacaatgatgggtatg	11	9	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89660173	T	T	89660173	1	4	184	0	1	0	0	0	0	0	0	0	5498	928	32	4		4	FAM13A	4	89660173	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	5307319	89660173	101494103	119	147782											
FAM13A	10144	broad.mit.edu	37	chr4	89660226	89660226	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggatctgtttgaccagCcggtacctgtcgtatagtgg	14	8	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89660226	T	T	89660226	2	4	184	1	0	0	0	0	0	0	0	1	5498	726	26	4		4	FAM13A	4	89660226	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	53	89660226	101494050	120	147783											
INTS12	57117	broad.mit.edu	37	chr4	106616825	106616825	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aattttgggtggctccacatCctaaaagatgaaaaaaggta	9	6	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106616825	G	G	106616825	3	3	184	1	0	0	0	0	1	0	0	0	7847	869	30	4	1251	4	INTS12	4	106616825	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	16956599	106616825	84537451	121	147784											
SPATA5	166378	broad.mit.edu	37	chr4	123900467	123900467	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggactggtgaagattactCtgaaggatttcttgcaggca	12	7	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123900467	G	G	123900467	3	3	184	1	0	0	0	0	1	0	0	0	15127	912	32	4	1833	4	SPATA5	4	123900467	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	17283642	123900467	67253809	122	147785											
GYPA	2993	broad.mit.edu	37	chr4	145038046	145038046	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgtaagaaattaagaggatCgttccaataacaccagccat	7	10	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145038046	G	G	145038046	2	3	184	1	0	0	0	0	0	0	0	1	6973	871	31	4		4	GYPA	4	145038046	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	21137579	145038046	46116230	123	147786											
PDLIM3	27295	broad.mit.edu	37	chr4	186423409	186423409	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttctcgtgtaagtgcgcGtgggtgggtgcgtgcgtgcg	19	8	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186423409	A	A	186423409	1	1	184	0	1	0	0	0	0	0	0	0	11775	1160	40	4		4	PDLIM3	4	186423409	3'UTR	SNP	G	TCGA-64-1677-01A-01W-0928-08	41385363	186423409	4730867	124	147787											
SORBS2	8470	broad.mit.edu	37	chr4	186544260	186544260	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgctctcagggatgagttccTctcgggaacatctggcagca	12	12	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186544260	A	A	186544260	3	1	184	1	0	0	0	0	1	0	0	0	15042	1550	54	5	1027	5	SORBS2	4	186544260	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	120851	186544260	4610016	125	147788											
CDH12	1010	broad.mit.edu	37	chr5	21751993	21751993	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgagggactctgccacGgacccactcccttcgtaggc	12	15	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21751993	A	A	21751993	2	1	184	1	0	0	0	0	0	0	0	1	3128	1103	39	4		4	CDH12	5	21751993	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08		21751993	159163267	126	147789											
UGT3A2	167127	broad.mit.edu	37	chr5	36037956	36037956	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtctctgccttgagcttcTttaactgaatagaaacacca	6	10	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36037956	C	C	36037956	3	2	184	1	0	0	0	0	1	0	0	0	17090	1609	56	5	341	5	UGT3A2	5	36037956	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	14285963	36037956	144877304	127	147790											
WDR70	55100	broad.mit.edu	37	chr5	37506991	37506991	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgggtcctgagtgagcCaccaccctcccacttggtcc	11	17	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37506991	T	T	37506991	1	4	184	0	1	0	0	0	0	0	0	0	17448	609	21	4		4	WDR70	5	37506991	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	1469035	37506991	143408269	128	147791											
SKIV2L2	23517	broad.mit.edu	37	chr5	54649065	54649065	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactgttttatttacaaatGcccgcaaatttgatgggaag	9	6	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54649065	A	A	54649065	3	1	184	1	0	0	0	0	1	0	0	0	14473	1319	46	4	1555	4	SKIV2L2	5	54649065	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	17142074	54649065	126266195	129	147792											
TAF9	6880	broad.mit.edu	37	chr5	68660768	68660768	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttacattcagcaaggctaGattacagattatcatagtca	7	7	3	2	rs138549217		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68660768	C	C	68660768	1	2	184	0	1	0	0	0	0	0	0	0	15654	957	33	4		4	TAF9	5	68660768	3'UTR	SNP	G	TCGA-64-1677-01A-01W-0928-08	14011703	68660768	112254492	130	147793											
POLK	51426	broad.mit.edu	37	chr5	74865234	74865234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatagtgcacattgacatgGatgctttctatgcagctgta	9	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74865234	A	A	74865234	3	1	184	1	0	0	0	0	1	0	0	0	12299	1174	41	4	335	4	POLK	5	74865234	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	6204466	74865234	106050026	131	147794											
POC5	134359	broad.mit.edu	37	chr5	74981288	74981288	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaccatactcttcctttTtattatttgtggagtctatc	6	9	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74981288	G	G	74981288	3	3	184	1	0	0	0	0	1	0	0	0	12272	1841	64	5	588	5	POC5	5	74981288	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	116054	74981288	105933972	132	147795											
ZCCHC9	84240	broad.mit.edu	37	chr5	80608439	80608439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttggatgtacctaaaccGcaaaaacccaaaacaaaaat	4	9	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80608439	T	T	80608439	2	4	184	1	0	0	0	0	0	0	0	1	17721	1074	38	3		3	ZCCHC9	5	80608439	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	5627151	80608439	100306821	133	147796											
GPR98	84059	broad.mit.edu	37	chr5	89943510	89943510	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagtagacagcagagcatatCcatatttgttaatgaagatg	9	5	0	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89943510	G	G	89943510	3	3	184	1	0	0	0	0	1	0	0	0	6787	855	30	4	3284	4	GPR98	5	89943510	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	9335071	89943510	90971750	134	147797											
RHOBTB3	22836	broad.mit.edu	37	chr5	95091086	95091086	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtttattatttttattttCtttttcaaaacagaaaaaat	3	3	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95091086	G	G	95091086	1	3	184	0	1	0	0	0	0	0	0	0	13444	928	32	4		4	RHOBTB3	5	95091086	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	5147576	95091086	85824174	135	147798											
RHOBTB3	22836	broad.mit.edu	37	chr5	95091260	95091260	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcgctgtaagccatgttttCatgctgcttttcaatgtgaa	9	8	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95091260	T	T	95091260	2	4	184	1	0	0	0	0	0	0	0	1	13444	825	29	4		4	RHOBTB3	5	95091260	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	174	95091260	85824000	136	147799											
COMMD10	51397	broad.mit.edu	37	chr5	115553788	115553788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatctccattttctgcagGgttattcccctccttgccag	7	14	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115553788	T	T	115553788	1	4	184	0	1	0	0	0	0	0	0	0	3747	1247	43	2		2	COMMD10	5	115553788	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	20462528	115553788	65361472	137	147800											
TCF7	6932	broad.mit.edu	37	chr5	133477970	133477970	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcccccctcagggaagcagGagctgcagcccttcgaccgc	12	17	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133477970	A	A	133477970	3	1	184	1	0	0	0	0	1	0	0	0	15818	1175	41	4	752	4	TCF7	5	133477970	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	17924182	133477970	47437290	138	147801											
KLHL3	26249	broad.mit.edu	37	chr5	137056262	137056262	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtatcagagtctgggagCtcagcttgacactgtgaaca	11	10	3	3	rs138386996		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137056262	G	G	137056262	3	3	184	1	0	0	0	0	1	0	0	0	8454	797	28	4	1793	4	KLHL3	5	137056262	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3578292	137056262	43858998	139	147802											
PCDHA10	56139	broad.mit.edu	37	chr5	140236393	140236393	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttaagatgtatgaaaatCaagtgaaccaaacattagta	7	4	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140236393	T	T	140236393	4	4	184	1	0	0	0	0	0	1	0	0	11614	827	29	4	762	4	PCDHA10	5	140236393	Nonsense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3180131	140236393	40678867	140	147803											
PCDHB3	56132	broad.mit.edu	37	chr5	140481829	140481829	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgttcgagttccgcgtgggCgccacagaccgtggctcccc	14	16	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140481829	T	T	140481829	2	4	184	1	0	0	0	0	0	0	0	1	11637	755	27	4		4	PCDHB3	5	140481829	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	245436	140481829	40433431	141	147804											
PCDHGA11	56105	broad.mit.edu	37	chr5	140801351	140801351	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccttgcaactgcggggcaGaacggatggggccaagaatc	14	10	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140801351	A	A	140801351	3	1	184	1	0	0	0	0	1	0	0	0	11646	942	33	4	559	4	PCDHGA11	5	140801351	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	319522	140801351	40113909	142	147805											
PANK3	79646	broad.mit.edu	37	chr5	167995708	167995708	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgtagcacatagcaccgtCtgcaatgttgagaagttttt	9	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167995708	G	G	167995708	3	3	184	1	0	0	0	0	1	0	0	0	11512	912	32	4	812	4	PANK3	5	167995708	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	27194357	167995708	12919552	143	147806											
DOCK2	1794	broad.mit.edu	37	chr5	169144557	169144557	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccaggatgcctagggcacAggaacttgagtaattttctt	11	8	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169144557	G	G	169144557	1	3	184	0	1	0	0	0	0	0	0	0	4727	203	7	5		5	DOCK2	5	169144557	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	1148849	169144557	11770703	144	147807											
DOCK2	1794	broad.mit.edu	37	chr5	169496915	169496915	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtctttccctctctctcttaGaagcctgcacttctattcct	4	15	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169496915	C	C	169496915	1	2	184	0	1	0	0	0	0	0	0	0	4727	957	33	4		4	DOCK2	5	169496915	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	352358	169496915	11418345	145	147808											
CNOT6	57472	broad.mit.edu	37	chr5	179996441	179996441	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attaagtccaaataaaaattCagtttgtaatggcagctatg	7	5	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179996441	T	T	179996441	1	4	184	0	1	0	0	0	0	0	0	0	3654	841	29	4		4	CNOT6	5	179996441	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	10499526	179996441	918819	146	147809											
GCNT2	2651	broad.mit.edu	37	chr6	10586437	10586437	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatcacctttgcgaagtgTcccttgcaaggattacctga	8	12	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10586437	A	A	10586437	1	1	184	0	1	0	0	0	0	0	0	0	6363	1667	58	5		5	GCNT2	6	10586437	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08		10586437	160528630	147	147810											
PAK1IP1	55003	broad.mit.edu	37	chr6	10695300	10695300	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgaggcttgcggcgaccacGaggtgagataccgcgtagtt	15	11	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10695300	T	T	10695300	4	4	184	1	0	0	0	0	0	1	0	0	11494	1059	37	3	84	3	PAK1IP1	6	10695300	Nonsense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	108863	10695300	160419767	148	147811											
NUP153	9972	broad.mit.edu	37	chr6	17632972	17632972	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcactaggcacaattcacaGtcccagcttccctcgggttt	8	14	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17632972	C	C	17632972	3	2	184	1	0	0	0	0	1	0	0	0	10850	1020	36	4	1883	4	NUP153	6	17632972	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	6937672	17632972	153482095	149	147812											
HIST1H2AA	221613	broad.mit.edu	37	chr6	25726495	25726495	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agttcctcatcattgcggatCgctagctgcaggtggcgggg	15	10	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25726495	T	T	25726495	2	4	184	1	0	0	0	0	0	0	0	1	7195	871	31	4		4	HIST1H2AA	6	25726495	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	8093523	25726495	145388572	150	147813											
SLC17A4	10050	broad.mit.edu	37	chr6	25778016	25778016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattccagtcatctccagaGgtaagcacagagttgcagca	9	11	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25778016	T	T	25778016	1	4	184	0	1	0	0	0	0	0	0	0	14532	1015	35	2		2	SLC17A4	6	25778016	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	51521	25778016	145337051	151	147814											
ZKSCAN3	80317	broad.mit.edu	37	chr6	28331628	28331628	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actaatttctgttaaggtttCttggcattctttgtatatta	6	5	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28331628	T	T	28331628	1	4	184	0	1	0	0	0	0	0	0	0	17814	928	32	4		4	ZKSCAN3	6	28331628	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	2553612	28331628	142783439	152	147815											
SCAND3	114821	broad.mit.edu	37	chr6	28542753	28542753	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaagattctcttcaatatCactactgtctgttccagtct	5	10	5	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28542753	T	T	28542753	3	4	184	1	0	0	0	0	1	0	0	0	13988	826	29	4	2256	4	SCAND3	6	28542753	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	211125	28542753	142572314	153	147816											
CCHCR1	54535	broad.mit.edu	37	chr6	31110851	31110851	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttatccagtagggaaggaaGaactgtcaacagtcgctgct	11	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31110851	A	A	31110851	3	1	184	1	0	0	0	0	1	0	0	0	2905	942	33	4	243	4	CCHCR1	6	31110851	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2568098	31110851	140004216	154	147817											
TCF19	6941	broad.mit.edu	37	chr6	31129531	31129531	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaaactccataggcagcctCagcaagctccggccccagcc	8	18	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31129531	A	A	31129531	2	1	184	1	0	0	0	0	0	0	0	1	15811	813	29	3		3	TCF19	6	31129531	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	18680	31129531	139985536	155	147818											
SYNGAP1	8831	broad.mit.edu	37	chr6	33400452	33400453	+	Intron	INS	-	C	C													aacccaccccatccccatttINScccccccagcaaggcttcct							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33400453	C	C	33400452	6	5	184	0	1	1	1	0	0	0	0	0	15566	1798	62	0		0	SYNGAP1	6	33400452	Intron	INS	-	TCGA-64-1677-01A-01W-0928-08	2270921	33400452	137714615	156	147819											
SLC26A8	116369	broad.mit.edu	37	chr6	35919285	35919285	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcattgcatatctgtggggGgagagaaaaccagtatcaga	14	6	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35919285	C	C	35919285	1	2	184	0	1	0	0	0	0	0	0	0	14637	1247	43	4		4	SLC26A8	6	35919285	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2518833	35919285	135195782	157	147820											
CPNE5	57699	broad.mit.edu	37	chr6	36790877	36790877	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttgtccaggaggttcctGaaagagggggagagaggagg	18	5	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36790877	C	C	36790877	1	2	184	0	1	0	0	0	0	0	0	0	3847	1305	45	4		4	CPNE5	6	36790877	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	871592	36790877	134324190	158	147821											
TRERF1	55809	broad.mit.edu	37	chr6	42224500	42224500	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcctcaaacagagagtgcAaagcaaattcagaattggtc	10	8	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42224500	C	C	42224500	3	2	184	1	0	0	0	0	1	0	0	0	16599	131	5	5	1084	5	TRERF1	6	42224500	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	5433623	42224500	128890567	159	147822											
SPATS1	221409	broad.mit.edu	37	chr6	44344043	44344043	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttatccgctgttggtgTttgtaaattttgcatcaaac	7	7	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44344043	C	C	44344043	1	2	184	0	1	0	0	0	0	0	0	0	15134	1740	60	5		5	SPATS1	6	44344043	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	2119543	44344043	126771024	160	147823											
FAM83B	222584	broad.mit.edu	37	chr6	54806253	54806253	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaaagttgattcatctccTagaagaaagcattcttcctc	5	10	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54806253	C	C	54806253	2	2	184	1	0	0	0	0	0	0	0	1	5687	1509	53	5		5	FAM83B	6	54806253	Silent	SNP	T	TCGA-64-1677-01A-01W-0928-08	10462210	54806253	116308814	161	147824											
COL19A1	1310	broad.mit.edu	37	chr6	70852699	70852699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatgggacccagaggacCgccaggagatgttgtatgta	13	10	0	2	rs143251981	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70852699	A	A	70852699	3	1	184	1	0	0	0	0	1	0	0	0	3708	652	23	1	1699	1	COL19A1	6	70852699	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	16046446	70852699	100262368	162	147825											
PREP	5550	broad.mit.edu	37	chr6	105733566	105733566	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacactctgagtaatatcatCtcaataggagcttgacattt	6	8	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105733566	T	T	105733566	1	4	184	0	1	0	0	0	0	0	0	0	12580	928	32	4		4	PREP	6	105733566	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	34880867	105733566	65381501	163	147826											
FRK	2444	broad.mit.edu	37	chr6	116360492	116360492	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagttctgagaatggtgtcCaacatctctgatgtggtggc	13	7	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116360492	T	T	116360492	1	4	184	0	1	0	0	0	0	0	0	0	6108	609	21	4		4	FRK	6	116360492	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	10626926	116360492	54754575	164	147827											
BCLAF1	9774	broad.mit.edu	37	chr6	136582459	136582459	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attttccatggtctcttcttCatcttcaacaatcccatccc	2	15	5	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136582459	T	T	136582459	3	4	184	1	0	0	0	0	1	0	0	0	1388	835	29	4	69	4	BCLAF1	6	136582459	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	20221967	136582459	34532608	165	147828											
C6orf97	80129	broad.mit.edu	37	chr6	151859248	151859248	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaactgaaagctgaaatggaGagctacaaggaaaacaatgc	11	6	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151859248	A	A	151859248	2	1	184	1	0	0	0	0	0	0	0	1	2399	933	33	4		4	C6orf97	6	151859248	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	15276789	151859248	19255819	166	147829											
SYNE1	23345	broad.mit.edu	37	chr6	152680536	152680536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttctgtcatgccagcccCtttgacttcgatggtctcca	9	13	3	1	rs139823841	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152680536	A	A	152680536	3	1	184	1	0	0	0	0	1	0	0	0	15564	681	24	2	16437	2	SYNE1	6	152680536	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	821288	152680536	18434531	167	147830											
TCP1	6950	broad.mit.edu	37	chr6	160206484	160206484	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatctcttcccagttcaTctgtgttaacaattaggttt	7	9	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160206484	C	C	160206484	3	2	184	1	0	0	0	0	1	0	0	0	15831	1435	50	5	1280	5	TCP1	6	160206484	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	7525948	160206484	10908583	168	147831											
C6orf118	168090	broad.mit.edu	37	chr6	165713014	165713014	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtacagaaacaaacaaaagtCcactggccatgtatgaggag	10	8	0	2	rs75628737	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165713014	T	T	165713014	1	4	184	0	1	0	0	0	0	0	0	0	2346	870	30	4		4	C6orf118	6	165713014	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	5506530	165713014	5402053	169	147832											
TCP10L2	401285	broad.mit.edu	37	chr6	167587449	167587449	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacgcggggcgagaatcacAcactctggtaccaaaggcgc	12	13	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167587449	G	G	167587449	3	3	184	1	0	0	0	0	1	0	0	0	15834	159	6	5	359	5	TCP10L2	6	167587449	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	1874435	167587449	3527618	170	147833											
THBS2	7058	broad.mit.edu	37	chr6	169629774	169629774	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcagatgggggcagttatCctgcaattggagaaggaaga	16	5	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169629774	T	T	169629774	3	4	184	1	0	0	0	0	1	0	0	0	15977	869	30	4	1402	4	THBS2	6	169629774	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	2042325	169629774	1485293	171	147834											
SDK1	221935	broad.mit.edu	37	chr7	4116733	4116733	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccaaggcctctcatctctCaccacctacaccatcgacgt	4	18	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4116733	A	A	4116733	2	1	184	1	0	0	0	0	0	0	0	1	14081	813	29	3		3	SDK1	7	4116733	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08		4116733	155021930	172	147835											
SDK1	221935	broad.mit.edu	37	chr7	4198173	4198173	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagacagaggcggtgaccacGctgcaggatggtgagcaacc	16	10	0	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4198173	C	C	4198173	2	2	184	1	0	0	0	0	0	0	0	1	14081	1074	38	4		4	SDK1	7	4198173	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	81440	4198173	154940490	173	147836											
HDAC9	9734	broad.mit.edu	37	chr7	18989088	18989088	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactatgcttcaaccataagAccataggtggtggtatttca	8	8	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18989088	G	G	18989088	1	3	184	0	1	0	0	0	0	0	0	0	7081	290	10	5		5	HDAC9	7	18989088	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	14790915	18989088	140149575	174	147837											
TWISTNB	221830	broad.mit.edu	37	chr7	19738310	19738310	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcttcctcagtgccattttCtgtaacttcttcagaaactt	5	11	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19738310	T	T	19738310	3	4	184	1	0	0	0	0	1	0	0	0	16910	922	32	4	374	4	TWISTNB	7	19738310	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	749222	19738310	139400353	175	147838											
TWISTNB	221830	broad.mit.edu	37	chr7	19739839	19739839	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actgctcaggtttaggaatgGaggcattgaaacacccatgt	11	8	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19739839	C	C	19739839	3	2	184	1	0	0	0	0	1	0	0	0	16910	1174	41	4	563	4	TWISTNB	7	19739839	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1529	19739839	139398824	176	147839											
DNAH11	8701	broad.mit.edu	37	chr7	21584806	21584806	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttaaagctttcacttatCtccatgacatttgaaattat	3	7	2	2	rs10269946		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21584806	G	G	21584806	1	3	184	0	1	0	0	0	0	0	0	0	4639	928	32	4		4	DNAH11	7	21584806	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	1844967	21584806	137553857	177	147840											
DNAH11	8701	broad.mit.edu	37	chr7	21630855	21630855	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtataataaactcaaacagaCgctcctggaagttgaatacc	7	9	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21630855	T	T	21630855	3	4	184	1	0	0	0	0	1	0	0	0	4639	536	19	4	2381	4	DNAH11	7	21630855	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	46049	21630855	137507808	178	147841											
HIBADH	11112	broad.mit.edu	37	chr7	27565834	27565834	+	Nonstop_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgtggccaaagggcacactCagaaggtctcctcctctcgt	10	15	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27565834	A	A	27565834	4	1	184	1	0	0	0	0	0	0	0	0	7166	837	29	3	4	3	HIBADH	7	27565834	Nonstop_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	5934979	27565834	131572829	179	147842											
CREB5	9586	broad.mit.edu	37	chr7	28857804	28857804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggatatctaagtaagtcGccgactttttcacttttctt	6	9	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28857804	T	T	28857804	1	4	184	0	1	0	0	0	0	0	0	0	3892	1102	38	3		3	CREB5	7	28857804	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1291970	28857804	130280859	180	147843											
GGCT	79017	broad.mit.edu	37	chr7	30540138	30540138	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attactgtttaacttataatTagaagccacctactcatcca	3	10	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30540138	G	G	30540138	1	3	184	0	1	0	0	0	0	0	0	0	6419	1769	61	5		5	GGCT	7	30540138	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	1682334	30540138	128598525	181	147844											
CCM2	83605	broad.mit.edu	37	chr7	45067234	45067234	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctggtcttcctgttcaGtcatgtttttttcagaggga	10	7	5	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45067234	T	T	45067234	1	4	184	0	1	0	0	0	0	0	0	0	2938	1043	36	3		3	CCM2	7	45067234	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	14527096	45067234	114071429	182	147845											
CACNA2D1	781	broad.mit.edu	37	chr7	81978994	81978994	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagaaaagattatgttctAtcagatctctggcaaataaa	6	6	4	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81978994	G	G	81978994	1	3	184	0	1	0	0	0	0	0	0	0	2574	464	16	5		5	CACNA2D1	7	81978994	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	36911760	81978994	77159669	183	147846											
PCLO	27445	broad.mit.edu	37	chr7	82595703	82595703	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggaacaggcataggagatGctttgggtcctgatggtgca	15	6	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82595703	A	A	82595703	3	1	184	1	0	0	0	0	1	0	0	0	11677	1319	46	4	12132	4	PCLO	7	82595703	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	616709	82595703	76542960	184	147847											
SEMA3D	223117	broad.mit.edu	37	chr7	84644551	84644551	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcaaatcgggcaaaacAaatgaattagaagcatcttt	8	7	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84644551	T	T	84644551	1	4	184	0	1	0	0	0	0	0	0	0	14140	145	5	5		5	SEMA3D	7	84644551	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	2048848	84644551	74494112	185	147848											
HEPACAM2	253012	broad.mit.edu	37	chr7	92821695	92821695	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctagaaaatgtgatacatTaaaaataaattatctcaaga	4	4	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92821695	G	G	92821695	1	3	184	0	1	0	0	0	0	0	0	0	7120	1769	61	5		5	HEPACAM2	7	92821695	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	8177144	92821695	66316968	186	147849											
SRRT	51593	broad.mit.edu	37	chr7	100473152	100473152	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacggtcccttcctccgctCgtccttttgcaccactccta	7	18	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100473152	T	T	100473152	1	4	184	0	1	0	0	0	0	0	0	0	15290	899	31	4		4	SRRT	7	100473152	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	7651457	100473152	58665511	187	147850											
LRRN3	54674	broad.mit.edu	37	chr7	110764566	110764566	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgatgtcaaggtatataatCttactcatctgaatccatca	5	9	5	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110764566	T	T	110764566	3	4	184	1	0	0	0	0	1	0	0	0	9123	913	32	4	1740	4	LRRN3	7	110764566	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	10291414	110764566	48374097	188	147851											
GPR85	54329	broad.mit.edu	37	chr7	112724255	112724255	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccctgaaggagcggtgttgGaaggtgcattgatcttcctc	14	9	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112724255	T	T	112724255	3	4	184	1	0	0	0	0	1	0	0	0	6780	1165	41	3	594	3	GPR85	7	112724255	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1959689	112724255	46414408	189	147852											
FOXP2	93986	broad.mit.edu	37	chr7	113937325	113937325	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactccatggcgcgcagctcCtatggggcgaacccacacac	11	16	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113937325	A	A	113937325	1	1	184	0	1	0	0	0	0	0	0	0	6087	696	24	2		2	FOXP2	7	113937325	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	1213070	113937325	45201338	190	147853											
FSCN3	29999	broad.mit.edu	37	chr7	127234028	127234028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatacagtcactgcaactGcgaagagtttgggcaggaga	13	7	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127234028	T	T	127234028	3	4	184	1	0	0	0	0	1	0	0	0	6129	1319	46	3	123	3	FSCN3	7	127234028	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	13296703	127234028	31904635	191	147854											
TTC26	79989	broad.mit.edu	37	chr7	138818498	138818498	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttctcccgttcgtaccagCgtccaggcggggttaccgtg	12	13	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138818498	G	G	138818498	1	3	184	0	1	0	0	0	0	0	0	0	16820	783	27	4		4	TTC26	7	138818498	5'UTR	SNP	C	TCGA-64-1677-01A-01W-0928-08	11584470	138818498	20320165	192	147855											
EPHB6	2051	broad.mit.edu	37	chr7	142562397	142562398	+	Frame_Shift_Ins	INS	-	C	C													gggggccaggcaggaggcagINScccccccaggctgcactgca							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142562398	C	C	142562397	7	5	184	1	0	1	1	0	0	0	0	0	5220	971	34	0	849	0	EPHB6	7	142562397	Frame_Shift_Ins	INS	-	TCGA-64-1677-01A-01W-0928-08	3743899	142562397	16576266	193	147856											
EPHB6	2051	broad.mit.edu	37	chr7	142568267	142568267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaccttgaccctgcttGcccctcccctcttaggcctt	8	17	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142568267	T	T	142568267	1	4	184	0	1	0	0	0	0	0	0	0	5220	1334	46	3		3	EPHB6	7	142568267	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	5870	142568267	16570396	194	147857											
ZNF425	155054	broad.mit.edu	37	chr7	148801601	148801601	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtgggcgcgcatggcgttCctccagaagaagcccctgct	14	13	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148801601	T	T	148801601	2	4	184	1	0	0	0	0	0	0	0	1	18026	854	30	4		4	ZNF425	7	148801601	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	6233334	148801601	10337062	195	147858											
RHEB	6009	broad.mit.edu	37	chr7	151174480	151174480	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatatctatggagtatgtctGaggaaagatagaatattcat	9	3	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151174480	C	C	151174480	3	2	184	1	0	0	0	0	1	0	0	0	13437	1299	45	4	360	4	RHEB	7	151174480	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2372879	151174480	7964183	196	147859											
MLL3	58508	broad.mit.edu	37	chr7	151917783	151917783	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagtcatccctgattcagtCaaacacacaccatcctgggt	7	13	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151917783	G	G	151917783	3	3	184	1	0	0	0	0	1	0	0	0	9715	825	29	4	11346	4	MLL3	7	151917783	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	743303	151917783	7220880	197	147860											
PCM1	5108	broad.mit.edu	37	chr8	17813044	17813044	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttctgtaggcttggcaCcggttgtcaatggagaatcc	12	10	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17813044	T	T	17813044	3	4	184	1	0	0	0	0	1	0	0	0	11678	507	18	4	1384	4	PCM1	8	17813044	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08		17813044	128550978	198	147861											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19363303	19363303	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaccagcaaaaccaccaCccgggaaatccacgcaagca	8	16	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19363303	A	A	19363303	3	1	184	1	0	0	0	0	1	0	0	0	3972	507	18	3	1583	3	CSGALNACT1	8	19363303	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	1550259	19363303	127000719	199	147862											
ATP6V1B2	526	broad.mit.edu	37	chr8	20061976	20061976	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctatttgactaaaactgactCttctgtatttctttccagca	4	10	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20061976	G	G	20061976	1	3	184	0	1	0	0	0	0	0	0	0	1183	928	32	4		4	ATP6V1B2	8	20061976	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	698673	20061976	126302046	200	147863											
NEFL	4747	broad.mit.edu	37	chr8	24810240	24810240	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttaattcacatagaatctgGaactcaactggttggttggt	9	6	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24810240	C	C	24810240	1	2	184	0	1	0	0	0	0	0	0	0	10410	1189	41	4		4	NEFL	8	24810240	3'UTR	SNP	G	TCGA-64-1677-01A-01W-0928-08	4748264	24810240	121553782	201	147864											
ERLIN2	11160	broad.mit.edu	37	chr8	37607085	37607085	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttattccagatcagattGatgaaaatctcaaactggct	6	8	3	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37607085	C	C	37607085	3	2	184	1	0	0	0	0	1	0	0	0	5275	1290	45	4	494	4	ERLIN2	8	37607085	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	12796845	37607085	108756937	202	147865											
FGFR1	2260	broad.mit.edu	37	chr8	38285345	38285345	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctgtataggtggaaagtAttacttaaaaaaatgaaaag	8	3	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38285345	G	G	38285345	1	3	184	0	1	0	0	0	0	0	0	0	5920	464	16	5		5	FGFR1	8	38285345	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	678260	38285345	108078677	203	147866											
ADAM9	8754	broad.mit.edu	37	chr8	38913071	38913082	+	Intron	DEL	TTTAATTTGAAT	-	-													acattatcctgatatttctgTttaatttgaattctatttca							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38913082	-	-	38913071	6	5	184	0	1	1	0	1	0	0	0	0	253	1740	60	0		0	ADAM9	8	38913071	Intron	DEL	TTTAATTTGAAT	TCGA-64-1677-01A-01W-0928-08	627726	38913071	107450951	204	147867											
CHRNB3	1142	broad.mit.edu	37	chr8	42552716	42552716	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagattttatgctggttctCatcgtccttggcatcccttc	7	13	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42552716	A	A	42552716	2	1	184	1	0	0	0	0	0	0	0	1	3423	813	29	3		3	CHRNB3	8	42552716	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	3639645	42552716	103811306	205	147868											
HGSNAT	138050	broad.mit.edu	37	chr8	43016642	43016642	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgatatcctttctgaggctCttgttgaggtaagatatttg	11	5	2	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43016642	G	G	43016642	2	3	184	1	0	0	0	0	0	0	0	1	7155	900	32	4		4	HGSNAT	8	43016642	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	463926	43016642	103347380	206	147869											
ST18	9705	broad.mit.edu	37	chr8	53092580	53092580	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttccaaatcttaatgtactTttacaaccatacaaaccata	1	11	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53092580	A	A	53092580	1	1	184	0	1	0	0	0	0	0	0	0	15330	1856	64	5		5	ST18	8	53092580	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	10075938	53092580	93271442	207	147870											
TTPA	7274	broad.mit.edu	37	chr8	63985409	63985409	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatggtattcaaggaagaaaTggaagaaagagagaagagga	14	1	1	5			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63985409	C	C	63985409	1	2	184	0	1	0	0	0	0	0	0	0	16862	1479	51	5		5	TTPA	8	63985409	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	10892829	63985409	82378613	208	147871											
TRPA1	8989	broad.mit.edu	37	chr8	72967797	72967797	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagcctcgtatcacttatgTcttgtaggagcctctgacag	10	10	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72967797	A	A	72967797	3	1	184	1	0	0	0	0	1	0	0	0	16702	1667	58	5	2020	5	TRPA1	8	72967797	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	8982388	72967797	73396225	209	147872											
ZFHX4	79776	broad.mit.edu	37	chr8	77619868	77619868	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttactgcaggagagctgtCaccttatatcagtgacccag	9	12	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77619868	G	G	77619868	4	3	184	1	0	0	0	0	0	1	0	0	17761	838	29	4	2684	4	ZFHX4	8	77619868	Nonsense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	4652071	77619868	68744154	210	147873											
TMEM67	91147	broad.mit.edu	37	chr8	94767165	94767165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgacgcgcggtggggctgGggtggcaatggcggtttggt	23	7	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94767165	T	T	94767165	3	4	184	1	0	0	0	0	1	0	0	0	16319	1232	43	2	25	2	TMEM67	8	94767165	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	17147297	94767165	51596857	211	147874											
MTERFD1	51001	broad.mit.edu	37	chr8	97256325	97256325	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacctaaaagaaagtaaatTtgctatgaatcgttatgtag	7	4	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97256325	C	C	97256325	1	2	184	0	1	0	0	0	0	0	0	0	10013	1856	64	5		5	MTERFD1	8	97256325	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	2489160	97256325	49107697	212	147875											
UBR5	51366	broad.mit.edu	37	chr8	103341705	103341705	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactgtcactttaatcacttCatcagatctagattaattat	3	9	5	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103341705	T	T	103341705	1	4	184	0	1	0	0	0	0	0	0	0	17031	841	29	4		4	UBR5	8	103341705	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	6085380	103341705	43022317	213	147876											
RIMS2	9699	broad.mit.edu	37	chr8	104922405	104922405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatacgtcttggcatagCagtgaggcatccccaatgtc	10	11	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104922405	A	A	104922405	3	1	184	1	0	0	0	0	1	0	0	0	13479	709	25	3	1812	3	RIMS2	8	104922405	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	1580700	104922405	41441617	214	147877											
KLHL38	340359	broad.mit.edu	37	chr8	124665152	124665152	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagagcagcccatctagTgactcctcgtccatcctaca	7	14	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124665152	C	C	124665152	2	2	184	1	0	0	0	0	0	0	0	1	8461	1683	59	5		5	KLHL38	8	124665152	Silent	SNP	T	TCGA-64-1677-01A-01W-0928-08	19742747	124665152	21698870	215	147878											
FAM91A1	157769	broad.mit.edu	37	chr8	124797966	124797966	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcatggaagaatgttccatCcgtaaacagattaaagtaac	7	7	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124797966	T	T	124797966	3	4	184	1	0	0	0	0	1	0	0	0	5708	855	30	4	989	4	FAM91A1	8	124797966	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	132814	124797966	21566056	216	147879											
MTSS1	9788	broad.mit.edu	37	chr8	125580618	125580618	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagttttccattaacttAcaatcactggccgcagcata	7	11	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125580618	G	G	125580618	5	3	184	1	0	0	0	0	0	0	1	0	10056	405	14	5	1679	5	MTSS1	8	125580618	Splice_Site	SNP	A	TCGA-64-1677-01A-01W-0928-08	782652	125580618	20783404	217	147880											
PHF20L1	51105	broad.mit.edu	37	chr8	133848837	133848837	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaacggagagtttgcttctGagtggggatgaatacaatca	12	6	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133848837	A	A	133848837	2	1	184	1	0	0	0	0	0	0	0	1	11927	1277	45	4		4	PHF20L1	8	133848837	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	8268219	133848837	12515185	218	147881											
PTK2	5747	broad.mit.edu	37	chr8	141774265	141774265	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaaaaagacagtaagtatCaataacttttaaatgcaagg	6	5	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141774265	G	G	141774265	1	3	184	0	1	0	0	0	0	0	0	0	12868	841	29	4		4	PTK2	8	141774265	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	7925428	141774265	4589757	219	147882											
PLEC	5339	broad.mit.edu	37	chr8	144994218	144994218	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagtgaagtactcagagctGatgagctcccacaccgtcac	10	13	2	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144994218	A	A	144994218	2	1	184	1	0	0	0	0	0	0	0	1	12147	1280	45	4		4	PLEC	8	144994218	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	3219953	144994218	1369804	220	147883											
C8orf33	65265	broad.mit.edu	37	chr8	146278275	146278275	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaagttcccctaagcgctGaggcccaggcaagggcgggc	15	12	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146278275	A	A	146278275	3	1	184	1	0	0	0	0	1	0	0	0	2447	1291	45	4	316	4	C8orf33	8	146278275	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1284057	146278275	85747	221	147884											
HAUS6	54801	broad.mit.edu	37	chr9	19063617	19063617	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaaatccaagttataaggaGaaaagaattccattcccttt	5	8	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19063617	C	C	19063617	1	2	184	0	1	0	0	0	0	0	0	0	7036	957	33	4		4	HAUS6	9	19063617	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08		19063617	122149814	222	147885											
KIF27	55582	broad.mit.edu	37	chr9	86502017	86502017	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgttaattgtaagttctctCattttttgtttagcttcagt	6	5	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86502017	G	G	86502017	3	3	184	1	0	0	0	0	1	0	0	0	8366	826	29	4	2067	4	KIF27	9	86502017	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	67438400	86502017	54711414	223	147886											
RNF20	56254	broad.mit.edu	37	chr9	104323505	104323505	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggacatgttcaatttcaaacGagcccaggtaaaagcagttg	10	8	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104323505	C	C	104323505	3	2	184	1	0	0	0	0	1	0	0	0	13584	1058	37	4	2708	4	RNF20	9	104323505	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	17821488	104323505	36889926	224	147887											
ASTN2	23245	broad.mit.edu	37	chr9	119582873	119582873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgtaaatggggcacctGggccttggggacagagactc	14	10	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119582873	T	T	119582873	1	4	184	0	1	0	0	0	0	0	0	0	1069	1363	47	2		2	ASTN2	9	119582873	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	15259368	119582873	21630558	225	147888											
FUBP3	8939	broad.mit.edu	37	chr9	133491925	133491925	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtgtgagcccggagcacgGagcacagcggccgctcgcag	17	13	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133491925	A	A	133491925	1	1	184	0	1	0	0	0	0	0	0	0	6153	1189	41	4		4	FUBP3	9	133491925	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	13909052	133491925	7721506	226	147889											
NTNG2	84628	broad.mit.edu	37	chr9	135073529	135073530	+	Missense_Mutation	DNP	CG	AA	AA													accctttcgtggaacaagacCgtggagctgaccgacgacgt							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	135073530	AA	AA	135073529	3	1	184	1	0	0	0	0	1	0	0	0	10800	639	23	1	396	1	NTNG2	9	135073529	Missense_Mutation	DNP	CG	TCGA-64-1677-01A-01W-0928-08	1581604	135073529	6139902	227	147890											
SETX	23064	broad.mit.edu	37	chr9	135173781	135173781	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtcatgcagaattaggtAtttttaacatatttttggat	8	3	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135173781	G	G	135173781	1	3	184	0	1	0	0	0	0	0	0	0	14254	464	16	5		5	SETX	9	135173781	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	100252	135173781	6039650	228	147891											
LCN12	286256	broad.mit.edu	37	chr9	139847406	139847406	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggccggagcacagggcGctgctgaacgctttcaccgc	13	14	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139847406	A	A	139847406	2	1	184	1	0	0	0	0	0	0	0	1	8754	1074	38	4		4	LCN12	9	139847406	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	4673625	139847406	1366025	229	147892											
ANKRD16	54522	broad.mit.edu	37	chr10	5922263	5922263	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tataaaattaaacggtacctGatcgatttttttcatcttta	4	6	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5922263	C	C	5922263	4	2	184	1	0	0	0	0	0	1	0	0	645	1294	45	4	167	4	ANKRD16	10	5922263	Nonsense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08		5922263	129612484	230	147893											
TAF3	83860	broad.mit.edu	37	chr10	8007006	8007006	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccacaaggtgtatgaggaGaaaaccaagctgccttcctc	9	12	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8007006	A	A	8007006	2	1	184	1	0	0	0	0	0	0	0	1	15644	933	33	4		4	TAF3	10	8007006	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	2084743	8007006	127527741	231	147894											
C10orf114	399726	broad.mit.edu	37	chr10	21785750	21785750	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccgcgattgcatcttcttGagcacagttaccaatgcgtt	8	12	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21785750	C	C	21785750	1	2	184	0	1	0	0	0	0	0	0	0	1596	1305	45	4		4	C10orf114	10	21785750	5'UTR	SNP	G	TCGA-64-1677-01A-01W-0928-08	13778744	21785750	113748997	232	147895											
MLLT10	8028	broad.mit.edu	37	chr10	21914514	21914514	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaagcagaacccccatttCttctttttgtcatcaggttg	8	10	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21914514	G	G	21914514	1	3	184	0	1	0	0	0	0	0	0	0	9719	928	32	4		4	MLLT10	10	21914514	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	128764	21914514	113620233	233	147896											
GPR158	57512	broad.mit.edu	37	chr10	25839895	25839895	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaggtctctttctgttttCatcccacaggttgttatttt	7	8	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25839895	T	T	25839895	1	4	184	0	1	0	0	0	0	0	0	0	6728	841	29	4		4	GPR158	10	25839895	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	3925381	25839895	109694852	234	147897											
YME1L1	10730	broad.mit.edu	37	chr10	27408100	27408100	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacccagacactgaagtTttagagtaagattagattca	8	6	1	5			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27408100	G	G	27408100	1	3	184	0	1	0	0	0	0	0	0	0	17614	1856	64	5		5	YME1L1	10	27408100	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	1568205	27408100	108126647	235	147898											
ZNF485	220992	broad.mit.edu	37	chr10	44101181	44101181	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacatgcttcttatccacatCtttgtactctttaaggactc	4	11	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44101181	G	G	44101181	1	3	184	0	1	0	0	0	0	0	0	0	18065	928	32	4		4	ZNF485	10	44101181	5'Flank	SNP	C	TCGA-64-1677-01A-01W-0928-08	16693081	44101181	91433566	236	147899											
GDF2	2658	broad.mit.edu	37	chr10	48414131	48414131	+	Frame_Shift_Del	DEL	G	-	-													agggcaggtttctggaacctGgggggacactgatgtccagc							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48414131	-	-	48414131	7	5	184	1	0	1	0	1	0	0	0	0	6378	1348	47	0	556	0	GDF2	10	48414131	Frame_Shift_Del	DEL	G	TCGA-64-1677-01A-01W-0928-08	4312950	48414131	87120616	237	147900											
SLC18A3	6572	broad.mit.edu	37	chr10	50819359	50819359	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagggcctgggctcagccttCgccgacacgtctggcatagc	13	15	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50819359	T	T	50819359	2	4	184	1	0	0	0	0	0	0	0	1	14540	883	31	4		4	SLC18A3	10	50819359	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	2405228	50819359	84715388	238	147901											
PARG	8505	broad.mit.edu	37	chr10	51093144	51093144	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctctctctctctctctgtCtctctgtctctctctctctc	2	19	9	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51093144	G	G	51093144	1	3	184	0	1	0	0	0	0	0	0	0	11542	928	32	4		4	PARG	10	51093144	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	273785	51093144	84441603	239	147902											
PRKG1	5592	broad.mit.edu	37	chr10	53822251	53822251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattagtgttcctttgtccaTtgtgggtaagcagtggatct	11	6	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53822251	A	A	53822251	1	1	184	0	1	0	0	0	0	0	0	0	12628	1508	52	5		5	PRKG1	10	53822251	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	2729107	53822251	81712496	240	147903											
ZNF365	22891	broad.mit.edu	37	chr10	64159246	64159246	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttaaagaaatctttctttCtgctcatctcttctccactc	2	12	6	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64159246	G	G	64159246	1	3	184	0	1	0	0	0	0	0	0	0	17995	928	32	4		4	ZNF365	10	64159246	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	10336995	64159246	71375501	241	147904											
HERC4	26091	broad.mit.edu	37	chr10	69721028	69721028	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatcagaaaggttcacttCaaatatacacaacacttgag	6	9	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69721028	G	G	69721028	1	3	184	0	1	0	0	0	0	0	0	0	7127	841	29	4		4	HERC4	10	69721028	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	5561782	69721028	65813719	242	147905											
C10orf27	219793	broad.mit.edu	37	chr10	72532426	72532426	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaggtggtgcaggtgcagtCagctgtctgctccagggaga	17	8	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72532426	T	T	72532426	1	4	184	0	1	0	0	0	0	0	0	0	1611	841	29	4		4	C10orf27	10	72532426	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	2811398	72532426	63002321	243	147906											
DUPD1	338599	broad.mit.edu	37	chr10	76818123	76818123	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgttgacgtgggtgtactgGggactgcccttccagaagag	15	9	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76818123	C	C	76818123	2	2	184	1	0	0	0	0	0	0	0	1	4844	1219	43	4		4	DUPD1	10	76818123	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	4285697	76818123	58716624	244	147907											
ZNF503	84858	broad.mit.edu	37	chr10	77160865	77160865	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagagagagggtccttacctCgatggggctgaccggcgtgg	17	10	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77160865	T	T	77160865	3	4	184	1	0	0	0	0	1	0	0	0	18078	893	31	4	1635	4	ZNF503	10	77160865	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	342742	77160865	58373882	245	147908											
PPIF	10105	broad.mit.edu	37	chr10	81112122	81112122	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaccaacggctcccagttCttcatctgcaccataaagac	5	15	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81112122	T	T	81112122	2	4	184	1	0	0	0	0	0	0	0	1	12424	912	32	4		4	PPIF	10	81112122	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	3951257	81112122	54422625	246	147909											
IFIT1B	439996	broad.mit.edu	37	chr10	91144396	91144396	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgtggaaagtgtcagcctCcttgggcttatccacaaatt	10	9	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91144396	T	T	91144396	2	4	184	1	0	0	0	0	0	0	0	1	7592	842	30	4		4	IFIT1B	10	91144396	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	10032274	91144396	44390351	247	147910											
CYP2C19	1557	broad.mit.edu	37	chr10	96602808	96602808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttctcctacactgcaaCtccatgttcttttattcctc	3	13	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96602808	A	A	96602808	1	1	184	0	1	0	0	0	0	0	0	0	4199	580	20	3		3	CYP2C19	10	96602808	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	5458412	96602808	38931939	248	147911											
ZDHHC16	84287	broad.mit.edu	37	chr10	99212147	99212147	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagacagaactggtgctgcCacgttatgctctcccttcac	9	13	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99212147	T	T	99212147	1	4	184	0	1	0	0	0	0	0	0	0	17732	609	21	4		4	ZDHHC16	10	99212147	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	2609339	99212147	36322600	249	147912											
MMS19	64210	broad.mit.edu	37	chr10	99238086	99238086	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttcaaaccctgcaggacaGatgggatcacaagatgatgg	11	10	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99238086	C	C	99238086	3	2	184	1	0	0	0	0	1	0	0	0	9766	942	33	4	2881	4	MMS19	10	99238086	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	25939	99238086	36296661	250	147913											
CHUK	1147	broad.mit.edu	37	chr10	101978567	101978567	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atacactttggatccttcttCttaatcttctcatgcctata	3	11	4	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101978567	T	T	101978567	2	4	184	1	0	0	0	0	0	0	0	1	3447	912	32	4		4	CHUK	10	101978567	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	2740481	101978567	33556180	251	147914											
NRAP	4892	broad.mit.edu	37	chr10	115364439	115364439	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggcagtgctgtgaacttgtGatactgtgtcctgtagtcgt	14	7	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115364439	C	C	115364439	3	2	184	1	0	0	0	0	1	0	0	0	10733	1290	45	4	1068	4	NRAP	10	115364439	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	13385872	115364439	20170308	252	147915											
INPP5F	22876	broad.mit.edu	37	chr10	121510631	121510631	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatcccatttgtttggggttGgtagaaggtgttattgggaa	14	3	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121510631	C	C	121510631	3	2	184	1	0	0	0	0	1	0	0	0	7828	1339	47	4	147	4	INPP5F	10	121510631	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	6146192	121510631	14024116	253	147916											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122334782	122334782	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatgatgattgccctgtcCcgcatgtgcgactacaagca	10	13	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122334782	T	T	122334782	2	4	184	1	0	0	0	0	0	0	0	1	12389	610	22	4		4	PPAPDC1A	10	122334782	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	824151	122334782	13199965	254	147917											
OR51A2	401667	broad.mit.edu	37	chr11	4976704	4976705	+	Missense_Mutation	DNP	CA	AT	AT													aagatgcttaacacagtgggCagagatgataaagacaaacc							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	4976705	AT	AT	4976704	3	1	184	1	0	0	0	0	1	0	0	0	11180	697	25	3	703	3	OR51A2	11	4976704	Missense_Mutation	DNP	CA	TCGA-64-1677-01A-01W-0928-08		4976704	130029812	255	147918											
OVCH2	341277	broad.mit.edu	37	chr11	7718296	7718296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggctttctgggaagtGcagcttcccctcagccccgc	13	14	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7718296	T	T	7718296	3	4	184	1	0	0	0	0	1	0	0	0	11418	1319	46	3	745	3	OVCH2	11	7718296	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2741592	7718296	127288220	256	147919											
AMPD3	272	broad.mit.edu	37	chr11	10527398	10527398	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcttcctgtctgatgctatGaaatcagaagagatcaccgc	9	10	3	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10527398	C	C	10527398	3	2	184	1	0	0	0	0	1	0	0	0	587	1290	45	4	2376	4	AMPD3	11	10527398	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2809102	10527398	124479118	257	147920											
CTR9	9646	broad.mit.edu	37	chr11	10800443	10800443	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttctgagcagtctgacaatGaatctgtgcagtcagggaga	13	7	4	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10800443	A	A	10800443	3	1	184	1	0	0	0	0	1	0	0	0	4058	1291	45	4	3411	4	CTR9	11	10800443	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	273045	10800443	124206073	258	147921											
SLC17A6	57084	broad.mit.edu	37	chr11	22387212	22387212	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagcattggagagagtGcaaatcttttaggtgcaatg	12	4	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22387212	A	A	22387212	3	1	184	1	0	0	0	0	1	0	0	0	14534	1319	46	4	894	4	SLC17A6	11	22387212	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	11586769	22387212	112619304	259	147922											
IMMP1L	196294	broad.mit.edu	37	chr11	31477921	31477921	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcacttgggctttttgcaatCacaatgtcacctctgagggg	10	10	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31477921	A	A	31477921	2	1	184	1	0	0	0	0	0	0	0	1	7786	813	29	3		3	IMMP1L	11	31477921	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	9090709	31477921	103528595	260	147923											
C11orf41	25758	broad.mit.edu	37	chr11	33565250	33565250	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccacagaatcaataatatCtggcttgcagcagcaaacaa	6	10	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33565250	G	G	33565250	3	3	184	1	0	0	0	0	1	0	0	0	1652	913	32	4	1252	4	C11orf41	11	33565250	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	2087329	33565250	101441266	261	147924											
RAG1	5896	broad.mit.edu	37	chr11	36596881	36596881	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacgctgactgccatcctgaGtcctctcattgctgagaggg	12	12	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36596881	C	C	36596881	3	2	184	1	0	0	0	0	1	0	0	0	13111	1029	36	4	2029	4	RAG1	11	36596881	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3031631	36596881	98409635	262	147925											
FOLH1	2346	broad.mit.edu	37	chr11	49196411	49196411	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagcacataacagttacttGatcaatatttgctaagcaaa	5	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49196411	A	A	49196411	1	1	184	0	1	0	0	0	0	0	0	0	6037	1305	45	4		4	FOLH1	11	49196411	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	12599530	49196411	85810105	263	147926											
OR4A5	81318	broad.mit.edu	37	chr11	51411989	51411989	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acagaaggaagcaaacctgtCgattcatgatggtcaaatag	10	7	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51411989	A	A	51411989	3	1	184	1	0	0	0	0	1	0	0	0	11137	884	31	3	544	3	OR4A5	11	51411989	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	2215578	51411989	83594527	264	147927											
OR5D18	219438	broad.mit.edu	37	chr11	55587679	55587679	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactctccctttcttgctctGatacttacatcaaccagtgg	5	13	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587679	T	T	55587679	3	4	184	1	0	0	0	0	1	0	0	0	11251	1290	45	3	576	3	OR5D18	11	55587679	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	4175690	55587679	79418837	265	147928											
RAB3IL1	5866	broad.mit.edu	37	chr11	61674928	61674928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgttggcttctcgaacCatcttgtgagcttcctagga	9	10	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61674928	A	A	61674928	3	1	184	1	0	0	0	0	1	0	0	0	13045	594	21	2	801	2	RAB3IL1	11	61674928	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	6087249	61674928	73331588	266	147929											
PPP2R5B	5526	broad.mit.edu	37	chr11	64699106	64699106	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagggctttgatgcccGccagagggaggctgggaggg	20	7	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64699106	A	A	64699106	1	1	184	0	1	0	0	0	0	0	0	0	12494	1102	38	4		4	PPP2R5B	11	64699106	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	3024178	64699106	70307410	267	147930											
DPP3	10072	broad.mit.edu	37	chr11	66254836	66254836	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggggttaggggagctcaaGgtagcagaggtttggtgggg	21	3	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66254836	A	A	66254836	1	1	184	0	1	0	0	0	0	0	0	0	4768	1015	35	4		4	DPP3	11	66254836	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1555730	66254836	68751680	268	147931											
SPTBN2	6712	broad.mit.edu	37	chr11	66472402	66472402	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctggctagagcctgcGtggagaactcgtcgtgcccc	14	14	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66472402	A	A	66472402	3	1	184	1	0	0	0	0	1	0	0	0	15238	1145	40	4	4923	4	SPTBN2	11	66472402	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	217566	66472402	68534114	269	147932											
CPT1A	1374	broad.mit.edu	37	chr11	68549256	68549256	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctgtcgtaacatcggccGtgtagtagagatttggcgta	12	8	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68549256	A	A	68549256	2	1	184	1	0	0	0	0	0	0	0	1	3863	1136	40	4		4	CPT1A	11	68549256	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	2076854	68549256	66457260	270	147933											
DLG2	1740	broad.mit.edu	37	chr11	85163541	85163541	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgacagggtggagtaGtgccaccatagcctccacta	10	13	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85163541	A	A	85163541	1	1	184	0	1	0	0	0	0	0	0	0	4595	1044	36	4		4	DLG2	11	85163541	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	16614285	85163541	49842975	271	147934											
RAB38	23682	broad.mit.edu	37	chr11	87847070	87847070	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacatgtggtatctctatcCtgacgtttacccaaaatggt	7	11	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87847070	G	G	87847070	1	3	184	0	1	0	0	0	0	0	0	0	13036	696	24	4		4	RAB38	11	87847070	3'UTR	SNP	C	TCGA-64-1677-01A-01W-0928-08	2683529	87847070	47159446	272	147935											
FOLR4	390243	broad.mit.edu	37	chr11	94040706	94040706	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagccagccctgagcgaCggaacagtgggcggtgtctc	14	12	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94040706	T	T	94040706	3	4	184	1	0	0	0	0	1	0	0	0	6042	527	19	4	594	4	FOLR4	11	94040706	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	6193636	94040706	40965810	273	147936											
AASDHPPT	60496	broad.mit.edu	37	chr11	105948530	105948530	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttggctgccgagccgagcCgaatggctgctggcagtgcg	16	12	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105948530	G	G	105948530	2	3	184	1	0	0	0	0	0	0	0	1	23	639	23	4		4	AASDHPPT	11	105948530	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	11907824	105948530	29057986	274	147937											
SIK2	23235	broad.mit.edu	37	chr11	111583037	111583037	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acgtggaggccttttcatttCcagcatctggctgtcaggcg	12	11	3	0	rs139007229	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111583037	G	G	111583037	3	3	184	1	0	0	0	0	1	0	0	0	14431	855	30	4	1238	4	SIK2	11	111583037	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	5634507	111583037	23423479	275	147938											
SIDT2	51092	broad.mit.edu	37	chr11	117050024	117050024	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgctcttggtggcctcGgtcgagagccatctgggggt	17	9	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117050024	T	T	117050024	2	4	184	1	0	0	0	0	0	0	0	1	14416	1103	39	1		1	SIDT2	11	117050024	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	5466987	117050024	17956492	276	147939											
ARCN1	372	broad.mit.edu	37	chr11	118468445	118468445	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtcggcgcgcctgttaTcggtgagatcgatggggagt	18	7	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118468445	C	C	118468445	3	2	184	1	0	0	0	0	1	0	0	0	844	1435	50	5	1299	5	ARCN1	11	118468445	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	1418421	118468445	16538071	277	147940											
TMEM225	338661	broad.mit.edu	37	chr11	123754943	123754943	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagacaaaaaaaaaaaaaAaaaaagaaaaagaaaaaagt	4	3	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123754943	G	G	123754943	1	3	184	0	1	0	0	0	0	0	0	0	16270	29	1	5		5	TMEM225	11	123754943	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	5286498	123754943	11251573	278	147941											
SIAE	54414	broad.mit.edu	37	chr11	124539239	124539239	+	Intron	DEL	A	-	-													agagggcaatagctgaacggAagatgggctgccttaccttt							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124539239	-	-	124539239	6	5	184	0	1	1	0	1	0	0	0	0	14411	261	9	0		0	SIAE	11	124539239	Intron	DEL	A	TCGA-64-1677-01A-01W-0928-08	784296	124539239	10467277	279	147942											
NCAPD3	23310	broad.mit.edu	37	chr11	134048744	134048744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatcagcagacgaagccaGgacggactgaatcagaagga	13	9	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134048744	T	T	134048744	3	4	184	1	0	0	0	0	1	0	0	0	10301	991	35	2	1909	2	NCAPD3	11	134048744	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	9509505	134048744	957772	280	147943											
CACNA2D4	93589	broad.mit.edu	37	chr12	1984343	1984343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagtgacctcaaagctcaCagccacacagctgacccatt	7	15	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1984343	A	A	1984343	1	1	184	0	1	0	0	0	0	0	0	0	2577	493	17	3		3	CACNA2D4	12	1984343	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08		1984343	131867552	281	147944											
PHB2	11331	broad.mit.edu	37	chr12	7077178	7077178	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcccggcggatcaacaGggatacctgagggcaggggt	16	11	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7077178	A	A	7077178	2	1	184	1	0	0	0	0	0	0	0	1	11910	991	35	4		4	PHB2	12	7077178	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	5092835	7077178	126774717	282	147945											
KLRC2	3822	broad.mit.edu	37	chr12	10583765	10583765	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaagatccacactgggctGatttaagtcgatttacttgt	9	7	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10583765	C	C	10583765	4	2	184	1	0	0	0	0	0	1	0	0	8487	1294	45	4	52	4	KLRC2	12	10583765	Nonsense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3506587	10583765	123268130	283	147946											
KLRC1	3821	broad.mit.edu	37	chr12	10599199	10599199	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaagatccacactgggctGatttaagtcgatttacttgt	9	7	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10599199	C	C	10599199	4	2	184	1	0	0	0	0	0	1	0	0	8486	1294	45	4	52	4	KLRC1	12	10599199	Nonsense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	15434	10599199	123252696	284	147947											
SLCO1C1	53919	broad.mit.edu	37	chr12	20874949	20874949	+	Frame_Shift_Del	DEL	G	-	-													acagactaccaaacaccccaGggagaaaatgcaaaaataat							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20874949	-	-	20874949	7	5	184	1	0	1	0	1	0	0	0	0	14839	991	35	0	1013	0	SLCO1C1	12	20874949	Frame_Shift_Del	DEL	G	TCGA-64-1677-01A-01W-0928-08	10275750	20874949	112976946	285	147948											
SLCO1B3	28234	broad.mit.edu	37	chr12	21242939	21242939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaaaaaatcccatggaaagGataccaaagtattagaaaat	8	5	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21242939	T	T	21242939	3	4	184	1	0	0	0	0	1	0	0	0	14838	1174	41	3		3	SLCO1B3	12	21242939	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	367990	21242939	112608956	286	147949											
ST8SIA1	6489	broad.mit.edu	37	chr12	22354963	22354963	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctttctggaccacagaagGttctgaaacctattgaagaa	9	8	3	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22354963	A	A	22354963	2	1	184	1	0	0	0	0	0	0	0	1	15349	1252	44	4		4	ST8SIA1	12	22354963	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	1112024	22354963	111496932	287	147950											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	184	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3043322	25398285	108453610	288	147951											
ADAMTS20	80070	broad.mit.edu	37	chr12	43945637	43945637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgcggtgactttaccttGcctggggtggaagtcaactt	12	10	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43945637	T	T	43945637	3	4	184	1	0	0	0	0	1	0	0	0	266	1328	46	3	5799	3	ADAMTS20	12	43945637	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	18547352	43945637	89906258	289	147952											
HDAC7	51564	broad.mit.edu	37	chr12	48190974	48190974	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccaccacccttcttttttCcaccctttaacccctcagtc	1	21	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48190974	A	A	48190974	1	1	184	0	1	0	0	0	0	0	0	0	7079	870	30	3		3	HDAC7	12	48190974	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	4245337	48190974	85660921	290	147953											
DDX23	9416	broad.mit.edu	37	chr12	49226375	49226375	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctacgaaaacaggaggctCagccctgcacccaggcagga	12	13	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49226375	A	A	49226375	1	1	184	0	1	0	0	0	0	0	0	0	4383	841	29	3		3	DDX23	12	49226375	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	1035401	49226375	84625520	291	147954											
PRKAG1	5571	broad.mit.edu	37	chr12	49398423	49398423	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcatcaaacaagctgtgaGagggtgggagataataagtt	13	5	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49398423	C	C	49398423	1	2	184	0	1	0	0	0	0	0	0	0	12606	957	33	4		4	PRKAG1	12	49398423	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	172048	49398423	84453472	292	147955											
FMNL3	91010	broad.mit.edu	37	chr12	50044917	50044917	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaaccaggtccctagccctCaaccttagccctctggaccc	7	19	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50044917	G	G	50044917	1	3	184	0	1	0	0	0	0	0	0	0	6011	841	29	4		4	FMNL3	12	50044917	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	646494	50044917	83806978	293	147956											
CALCOCO1	57658	broad.mit.edu	37	chr12	54119004	54119004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccacgggatggtgccCggcttagtggtgattcttcc	12	13	1	1	rs149998353	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54119004	A	A	54119004	3	1	184	1	0	0	0	0	1	0	0	0	2603	652	23	1	2108	1	CALCOCO1	12	54119004	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	4074087	54119004	79732891	294	147957											
SUOX	6821	broad.mit.edu	37	chr12	56397873	56397873	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacacctatcgcttacacGtagtaggagcacctgggggt	12	11	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56397873	A	A	56397873	3	1	184	1	0	0	0	0	1	0	0	0	15513	1145	40	4	710	4	SUOX	12	56397873	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2278869	56397873	77454022	295	147958											
ERBB3	2065	broad.mit.edu	37	chr12	56478753	56478753	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgccctgttgtctctctCatttacataatctgctctgt	5	11	4	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56478753	T	T	56478753	1	4	184	0	1	0	0	0	0	0	0	0	5250	841	29	4		4	ERBB3	12	56478753	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	80880	56478753	77373142	296	147959											
DCTN2	10540	broad.mit.edu	37	chr12	57929244	57929245	+	Intron	DEL	AC	-	-													tcactacaccattcccatcaAcacacacacacacacaacaa							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57929245	-	-	57929244	6	5	184	0	1	1	0	1	0	0	0	0	4340	58	2	0		0	DCTN2	12	57929244	Intron	DEL	AC	TCGA-64-1677-01A-01W-0928-08	1450491	57929244	75922651	297	147960											
TSFM	10102	broad.mit.edu	37	chr12	58177112	58177112	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtactagagctcgacctCagactcttggggcggtcacg	14	11	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58177112	A	A	58177112	1	1	184	0	1	0	0	0	0	0	0	0	16740	841	29	3		3	TSFM	12	58177112	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	247868	58177112	75674783	298	147961											
TRHDE	29953	broad.mit.edu	37	chr12	73012628	73012628	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttgcgtaagtaaaaatcttCgtttgtgcatcatcatgtat	7	6	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73012628	A	A	73012628	1	1	184	0	1	0	0	0	0	0	0	0	16603	899	31	3		3	TRHDE	12	73012628	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	14835516	73012628	60839267	299	147962											
KCNC2	3747	broad.mit.edu	37	chr12	75442065	75442065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgggggtgatagtggcgGctcacttcctgtactgtcgt	14	9	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75442065	T	T	75442065	3	4	184	1	0	0	0	0	1	0	0	0	8085	1203	42	3	342	3	KCNC2	12	75442065	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2429437	75442065	58409830	300	147963											
NAV3	89795	broad.mit.edu	37	chr12	78452814	78452814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaacctatatactagaaGtctgaaccgaataccagaca	5	10	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78452814	T	T	78452814	3	4	184	1	0	0	0	0	1	0	0	0	10279	1029	36	3	2601	3	NAV3	12	78452814	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3010749	78452814	55399081	301	147964											
NAV3	89795	broad.mit.edu	37	chr12	78570344	78570344	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttataccttttaaaacagAttaccttgtatgtcttttct	3	7	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78570344	G	G	78570344	1	3	184	0	1	0	0	0	0	0	0	0	10279	348	12	5		5	NAV3	12	78570344	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	117530	78570344	55281551	302	147965											
LIN7A	8825	broad.mit.edu	37	chr12	81242138	81242138	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaagaatgtgtaagaaCatgaagaataataattcttt	7	2	1	5			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81242138	G	G	81242138	1	3	184	0	1	0	0	0	0	0	0	0	8883	493	17	4		4	LIN7A	12	81242138	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	2671794	81242138	52609757	303	147966											
PPFIA2	8499	broad.mit.edu	37	chr12	81762875	81762875	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgattggggggtaatagtTcttaatatacatactctttg	9	4	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81762875	A	A	81762875	1	1	184	0	1	0	0	0	0	0	0	0	12406	1798	62	5		5	PPFIA2	12	81762875	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	520737	81762875	52089020	304	147967											
MGAT4C	25834	broad.mit.edu	37	chr12	86373302	86373302	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgcaaaatatcattttgcCgatcttctgttccagtattt	6	8	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86373302	G	G	86373302	3	3	184	1	0	0	0	0	1	0	0	0	9640	652	23	4	238	4	MGAT4C	12	86373302	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	4610427	86373302	47478593	305	147968											
MYBPC1	4604	broad.mit.edu	37	chr12	102071209	102071209	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgacatttgaaaaccttggTtgacagtgaccagacagaga	10	8	0	6			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102071209	C	C	102071209	1	2	184	0	1	0	0	0	0	0	0	0	10105	1740	60	5		5	MYBPC1	12	102071209	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	15697907	102071209	31780686	306	147969											
POLR3B	55703	broad.mit.edu	37	chr12	106890582	106890582	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccggtgtgctggacggcaGattccactacggcactgcgt	15	12	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106890582	T	T	106890582	3	4	184	1	0	0	0	0	1	0	0	0	12324	942	33	3	2968	3	POLR3B	12	106890582	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	4819373	106890582	26961313	307	147970											
CORO1C	23603	broad.mit.edu	37	chr12	109051145	109051145	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtggtgaagacattgccatCggccaggaagatggctctca	13	9	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109051145	T	T	109051145	3	4	184	1	0	0	0	0	1	0	0	0	3787	884	31	4	763	4	CORO1C	12	109051145	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	2160563	109051145	24800750	308	147971											
ATXN2	6311	broad.mit.edu	37	chr12	111893881	111893881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtatacgccggctgaacGtgagaaggatggatcgtaaa	14	6	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111893881	T	T	111893881	3	4	184	1	0	0	0	0	1	0	0	0	1215	1136	40	3	257	3	ATXN2	12	111893881	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2842736	111893881	21958014	309	147972											
C12orf51	283450	broad.mit.edu	37	chr12	112600871	112600871	+	Silent	SNP	C	T	T													gtgccatctgggggggcgatCttcatggggtacgggggcac							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112600871	T	T	112600871	2	4	184	1	0	0	0	0	0	0	0	1	1709	912	32	4		4	C12orf51	12	112600871	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	706990	112600871	21251024	310	147973	630	2									
C12orf51	283450	broad.mit.edu	37	chr12	112600874	112600874	+	Missense_Mutation	SNP	C	T	T													ccatctgggggggcgatcttCatggggtacgggggcacatg							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112600874	T	T	112600874	3	4	184	1	0	0	0	0	1	0	0	0	1709	826	29	4	172	4	C12orf51	12	112600874	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3	112600874	21251021	311	147974	630	2									
C12orf51	283450	broad.mit.edu	37	chr12	112605118	112605118	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagaactgtgccttgcactCacgctctcaaacttcttgac	6	15	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112605118	G	G	112605118	1	3	184	0	1	0	0	0	0	0	0	0	1709	841	29	4		4	C12orf51	12	112605118	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	4244	112605118	21246777	312	147975											
TPCN1	53373	broad.mit.edu	37	chr12	113711320	113711320	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctgcaaggcatgtgctctGagaggatggagacaggcaga	15	8	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113711320	C	C	113711320	1	2	184	0	1	0	0	0	0	0	0	0	16519	1305	45	4		4	TPCN1	12	113711320	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1106202	113711320	20140575	313	147976											
PXN	5829	broad.mit.edu	37	chr12	120650309	120650309	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcgagccgcgccgctcGtggtagtgcacctcacagta	12	15	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120650309	A	A	120650309	2	1	184	1	0	0	0	0	0	0	0	1	12960	1136	40	4		4	PXN	12	120650309	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	6938989	120650309	13201586	314	147977											
ACADS	35	broad.mit.edu	37	chr12	121175683	121175683	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtccaccaccgcccgggcCgagggcgactcatgggttct	14	16	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121175683	T	T	121175683	2	4	184	1	0	0	0	0	0	0	0	1	114	639	23	4		4	ACADS	12	121175683	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	525374	121175683	12676212	315	147978											
AACS	65985	broad.mit.edu	37	chr12	125612687	125612687	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcttctaaattttgagtctCcctttgccattgcttgcagg	9	10	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125612687	T	T	125612687	1	4	184	0	1	0	0	0	0	0	0	0	9	870	30	4		4	AACS	12	125612687	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	4437004	125612687	8239208	316	147979											
POLE	5426	broad.mit.edu	37	chr12	133257827	133257827	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccactgactccgttccaggCgcttgagtgccgaaactgag	11	13	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133257827	A	A	133257827	3	1	184	1	0	0	0	0	1	0	0	0	12291	768	27	3	6951	3	POLE	12	133257827	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	7645140	133257827	594068	317	147980											
ANKLE2	23141	broad.mit.edu	37	chr12	133318046	133318046	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccttcagttccacagatTtatttttgcttctttcacaa	4	11	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133318046	C	C	133318046	3	2	184	1	0	0	0	0	1	0	0	0	633	1841	64	5	1465	5	ANKLE2	12	133318046	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	60219	133318046	533849	318	147981											
FLT1	2321	broad.mit.edu	37	chr13	28919692	28919692	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacttgtccgaggttcctgGagagaaaaaaaatcacaata	9	7	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28919692	A	A	28919692	1	1	184	0	1	0	0	0	0	0	0	0	5999	1189	41	4		4	FLT1	13	28919692	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08		28919692	86250186	319	147982											
RXFP2	122042	broad.mit.edu	37	chr13	32349457	32349457	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccatgctatttgtagatAtctcaaccacaactgcatca	4	13	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32349457	G	G	32349457	3	3	184	1	0	0	0	0	1	0	0	0	13871	449	16	5	598	5	RXFP2	13	32349457	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	3429765	32349457	82820421	320	147983											
STOML3	161003	broad.mit.edu	37	chr13	39540914	39540914	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactactggcttctccataGgaatagacaccactctctat	5	12	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39540914	T	T	39540914	1	4	184	0	1	0	0	0	0	0	0	0	15433	1015	35	2		2	STOML3	13	39540914	3'UTR	SNP	G	TCGA-64-1677-01A-01W-0928-08	7191457	39540914	75628964	321	147984											
STK24	8428	broad.mit.edu	37	chr13	99105474	99105477	+	Intron	DEL	AGAG	-	-													tagagagtatctagggaaaaAgagagagagagaagtcaaca					rs113209502		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99105477	-	-	99105474	6	5	184	0	1	1	0	1	0	0	0	0	15411	87	3	0		0	STK24	13	99105474	Intron	DEL	AGAG	TCGA-64-1677-01A-01W-0928-08	59564560	99105474	16064404	322	147985											
CUL4A	8451	broad.mit.edu	37	chr13	113883759	113883759	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttctcctttctgctggtcaGatcatgatcagaagcatctt	8	10	6	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113883759	C	C	113883759	5	2	184	1	0	0	0	0	0	0	1	0	4090	956	33	4	456	4	CUL4A	13	113883759	Splice_Site	SNP	G	TCGA-64-1677-01A-01W-0928-08	14778285	113883759	1286119	323	147986											
CUL4A	8451	broad.mit.edu	37	chr13	113897452	113897452	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgttcatcaacaagagaccCaacaagcctgcagaactgat	7	12	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113897452	T	T	113897452	2	4	184	1	0	0	0	0	0	0	0	1	4090	581	21	4		4	CUL4A	13	113897452	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	13693	113897452	1272426	324	147987											
POTEG	404785	broad.mit.edu	37	chr14	19563533	19563533	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtatgctgtttctagtcaTcataatgtgtaagtgtttac	9	5	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19563533	G	G	19563533	3	3	184	1	0	0	0	0	1	0	0	0	12362	1432	50	5	1065	5	POTEG	14	19563533	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08		19563533	87786007	325	147988											
TEP1	7011	broad.mit.edu	37	chr14	20871615	20871615	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggctccatcccctgtaggGacaggagaagcaatttcaaa	11	10	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20871615	A	A	20871615	1	1	184	0	1	0	0	0	0	0	0	0	15881	1189	41	4		4	TEP1	14	20871615	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1308082	20871615	86477925	326	147989											
RPGRIP1	57096	broad.mit.edu	37	chr14	21811148	21811148	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggatggcgtataagcacttGgagcctcactaacctttagg	11	9	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21811148	C	C	21811148	1	2	184	0	1	0	0	0	0	0	0	0	13660	1363	47	4		4	RPGRIP1	14	21811148	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	939533	21811148	85538392	327	147990											
CHD8	57680	broad.mit.edu	37	chr14	21897118	21897118	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttccttactatgtaagtctCtcacctgtggctgcagtacc	7	12	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21897118	G	G	21897118	1	3	184	0	1	0	0	0	0	0	0	0	3362	928	32	4		4	CHD8	14	21897118	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	85970	21897118	85452422	328	147991											
MMP14	4323	broad.mit.edu	37	chr14	23311752	23311752	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctacatccgtgagggccatGagaagcaggccgacatcatg	12	12	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23311752	C	C	23311752	3	2	184	1	0	0	0	0	1	0	0	0	9746	1291	45	4	528	4	MMP14	14	23311752	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1414634	23311752	84037788	329	147992											
LRFN5	145581	broad.mit.edu	37	chr14	42360651	42360651	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcagtttttgggaggcacCatgattattattattggtgg	11	5	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42360651	G	G	42360651	2	3	184	1	0	0	0	0	0	0	0	1	9028	581	21	4		4	LRFN5	14	42360651	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	19048899	42360651	64988889	330	147993											
CDKL1	8814	broad.mit.edu	37	chr14	50864021	50864021	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcggcgtcagtgaatgaatGagagggagaaaggaaagaag	17	3	1	5			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50864021	A	A	50864021	1	1	184	0	1	0	0	0	0	0	0	0	3183	1305	45	4		4	CDKL1	14	50864021	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	8503370	50864021	56485519	331	147994											
MAP4K5	11183	broad.mit.edu	37	chr14	50935437	50935437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgctgttattcctactgcCcagatatcacagagttggtt	8	9	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50935437	A	A	50935437	3	1	184	1	0	0	0	0	1	0	0	0	9355	624	22	2	2026	2	MAP4K5	14	50935437	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	71416	50935437	56414103	332	147995											
TRMT5	57570	broad.mit.edu	37	chr14	61446167	61446167	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgagttctgctttctcaaagGaatcatgagtaaatatttta	7	5	3	2	rs146315661		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61446167	C	C	61446167	3	2	184	1	0	0	0	0	1	0	0	0	16692	1174	41	4	1096	4	TRMT5	14	61446167	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	10510730	61446167	45903373	333	147996											
PPP2R5E	5529	broad.mit.edu	37	chr14	63888788	63888788	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgctgtcactaggagggaGagttctgaatatattgcaag	12	5	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63888788	C	C	63888788	3	2	184	1	0	0	0	0	1	0	0	0	12497	942	33	4	1068	4	PPP2R5E	14	63888788	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2442621	63888788	43460752	334	147997											
AKAP5	9495	broad.mit.edu	37	chr14	64935712	64935712	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtgaatcaaatgtgagCaatagcacaacttctggaga	10	7	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64935712	T	T	64935712	2	4	184	1	0	0	0	0	0	0	0	1	454	709	25	4		4	AKAP5	14	64935712	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	1046924	64935712	42413828	335	147998											
HSPA2	3306	broad.mit.edu	37	chr14	65008589	65008589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagatcgtgctggtggGcggctccactcgtatcccca	13	14	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65008589	T	T	65008589	3	4	184	1	0	0	0	0	1	0	0	0	7480	1203	42	3	1024	3	HSPA2	14	65008589	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	72877	65008589	42340951	336	147999											
FUT8	2530	broad.mit.edu	37	chr14	66208847	66208847	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaaattatgcaaacactaCatcctgatgcctctgcaaac	5	11	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66208847	T	T	66208847	3	4	184	1	0	0	0	0	1	0	0	0	6170	478	17	4	1580	4	FUT8	14	66208847	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	1200258	66208847	41140693	337	148000											
LIN52	91750	broad.mit.edu	37	chr14	74551687	74551687	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggttggaagatggcgtctCccacagacggtaagagccgg	16	9	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74551687	G	G	74551687	3	3	184	1	0	0	0	0	1	0	0	0	8881	855	30	4	24	4	LIN52	14	74551687	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	8342840	74551687	32797853	338	148001											
KIAA0317	9870	broad.mit.edu	37	chr14	75142464	75142464	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctcaggggtgtggcactCagagggcgagtcttcatctt	13	10	5	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75142464	T	T	75142464	3	4	184	1	0	0	0	0	1	0	0	0	8237	835	29	4	1505	4	KIAA0317	14	75142464	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	590777	75142464	32207076	339	148002											
C14orf178	283579	broad.mit.edu	37	chr14	78235900	78235900	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtcttccaagtgaaagattCtacctttctaagacatctgg	7	9	4	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78235900	G	G	78235900	3	3	184	1	0	0	0	0	1	0	0	0	1774	913	32	4	258	4	C14orf178	14	78235900	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3093436	78235900	29113640	340	148003											
PPP4R4	57718	broad.mit.edu	37	chr14	94733329	94733329	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acaggatatacaacttctgtCtcagggttaggaaagacttc	9	8	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94733329	G	G	94733329	2	3	184	1	0	0	0	0	0	0	0	1	12506	900	32	4		4	PPP4R4	14	94733329	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	16497429	94733329	12616211	341	148004											
SERPINA4	5267	broad.mit.edu	37	chr14	95033273	95033273	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gactagctctgtggcctgcaGatgtcctgtaccttcttttc	9	12	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95033273	C	C	95033273	1	2	184	0	1	0	0	0	0	0	0	0	14204	957	33	4		4	SERPINA4	14	95033273	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	299944	95033273	12316267	342	148005											
AHNAK2	113146	broad.mit.edu	37	chr14	105419327	105419327	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcacctccttgtcggccaGggacaggtccccctccagcc	10	18	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105419327	A	A	105419327	2	1	184	1	0	0	0	0	0	0	0	1	415	991	35	4		4	AHNAK2	14	105419327	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	10386054	105419327	1930213	343	148006											
FMN1	342184	broad.mit.edu	37	chr15	33304556	33304556	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcaaggccacacaaggtGgatgaagagttgtggaacca	13	7	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33304556	A	A	33304556	1	1	184	0	1	0	0	0	0	0	0	0	6007	1363	47	4		4	FMN1	15	33304556	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08		33304556	69226836	344	148007											
CASC5	57082	broad.mit.edu	37	chr15	40902476	40902476	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagtctcatatgaaaatagtGagaaagtcagaaatggaagg	12	3	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40902476	C	C	40902476	2	2	184	1	0	0	0	0	0	0	0	1	2689	1277	45	4		4	CASC5	15	40902476	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	7597920	40902476	61628916	345	148008											
MAPKBP1	23005	broad.mit.edu	37	chr15	42108784	42108784	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacttcagtccctgagtgaGatgctgaaggtggaggccca	14	9	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42108784	C	C	42108784	3	2	184	1	0	0	0	0	1	0	0	0	9384	933	33	4	1589	4	MAPKBP1	15	42108784	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1206308	42108784	60422608	346	148009											
CAPN3	825	broad.mit.edu	37	chr15	42678468	42678468	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcatcgaaaactacgcaggGatcttccacttccaggtgag	9	11	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42678468	A	A	42678468	2	1	184	1	0	0	0	0	0	0	0	1	2654	1161	41	4		4	CAPN3	15	42678468	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	569684	42678468	59852924	347	148010											
SHC4	399694	broad.mit.edu	37	chr15	49118045	49118045	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggacctggtccatgatggtCttggaaagatgcacttcaca	11	9	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49118045	G	G	49118045	1	3	184	0	1	0	0	0	0	0	0	0	14386	928	32	4		4	SHC4	15	49118045	3'UTR	SNP	C	TCGA-64-1677-01A-01W-0928-08	6439577	49118045	53413347	348	148011											
SHC4	399694	broad.mit.edu	37	chr15	49118082	49118082	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagtttgtgctctattttAtctacaaacaaagtttaaat	4	7	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49118082	T	T	49118082	1	4	184	0	1	0	0	0	0	0	0	0	14386	464	16	5		5	SHC4	15	49118082	3'UTR	SNP	A	TCGA-64-1677-01A-01W-0928-08	37	49118082	53413310	349	148012											
DMXL2	23312	broad.mit.edu	37	chr15	51792347	51792347	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatacaacatttccagaagCgtactttattgtcagaacaa	5	10	1	2	rs138911498		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51792347	T	T	51792347	3	4	184	1	0	0	0	0	1	0	0	0	4635	768	27	4	6143	4	DMXL2	15	51792347	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	2674265	51792347	50739045	350	148013											
SMAD3	4088	broad.mit.edu	37	chr15	67473637	67473637	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctccatctcctactacgaGctgaaccagcgcgtcgggga	11	14	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67473637	A	A	67473637	2	1	184	1	0	0	0	0	0	0	0	1	14873	962	34	4		4	SMAD3	15	67473637	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	15681290	67473637	35057755	351	148014											
GLCE	26035	broad.mit.edu	37	chr15	69548421	69548421	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgttgggggcttcaaTagcaatgtgggaagtaaggt	15	5	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69548421	A	A	69548421	3	1	184	1	0	0	0	0	1	0	0	0	6496	1403	49	5	278	5	GLCE	15	69548421	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	2074784	69548421	32982971	352	148015											
NTRK3	4916	broad.mit.edu	37	chr15	88524565	88524565	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccttcaagtttaatatccCatgattgtctatgtttgaaa	6	7	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88524565	G	G	88524565	1	3	184	0	1	0	0	0	0	0	0	0	10803	594	21	4		4	NTRK3	15	88524565	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	18976144	88524565	14006827	353	148016											
CIITA	4261	broad.mit.edu	37	chr16	11016139	11016139	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtctgggcggtgggtggctCagcccggggtgggagacact	20	9	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11016139	G	G	11016139	1	3	184	0	1	0	0	0	0	0	0	0	3459	841	29	4		4	CIITA	16	11016139	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08		11016139	79338614	354	148017											
PARN	5073	broad.mit.edu	37	chr16	14645891	14645891	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttaccaatctttacttgCtcgggctggctaagggaaac	9	11	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14645891	T	T	14645891	2	4	184	1	0	0	0	0	0	0	0	1	11547	796	28	4		4	PARN	16	14645891	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	3629752	14645891	75708862	355	148018											
ABCC1	4363	broad.mit.edu	37	chr16	16225762	16225762	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggacttcgttctcaggcaCatcaatgtcacgatcaatgg	9	11	4	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16225762	T	T	16225762	2	4	184	1	0	0	0	0	0	0	0	1	49	477	17	4		4	ABCC1	16	16225762	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	1579871	16225762	74128991	356	148019											
IL21R	50615	broad.mit.edu	37	chr16	27457349	27457349	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatggaagaagatatgggcCgtccccagccctgagcggtt	13	11	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27457349	A	A	27457349	2	1	184	1	0	0	0	0	0	0	0	1	7741	639	23	1		1	IL21R	16	27457349	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	11231587	27457349	62897404	357	148020											
MYLPF	29895	broad.mit.edu	37	chr16	30387879	30387879	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgggtccaaggccccGgctgccttttcccagaccct	10	17	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30387879	A	A	30387879	1	1	184	0	1	0	0	0	0	0	0	0	10154	1131	39	4		4	MYLPF	16	30387879	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2930530	30387879	59966874	358	148021											
ZNF768	79724	broad.mit.edu	37	chr16	30548666	30548666	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagaaccatgagatctcctgGaaatgcttccctgggaaggc	11	10	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30548666	A	A	30548666	1	1	184	0	1	0	0	0	0	0	0	0	18270	1189	41	4		4	ZNF768	16	30548666	5'Flank	SNP	G	TCGA-64-1677-01A-01W-0928-08	160787	30548666	59806087	359	148022											
LONP2	83752	broad.mit.edu	37	chr16	48368461	48368461	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgcatgggggcgcaggCgagcacagctcttgtggcac	16	11	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48368461	A	A	48368461	1	1	184	0	1	0	0	0	0	0	0	0	8980	783	27	3		3	LONP2	16	48368461	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	17819795	48368461	41986292	360	148023											
KIFC3	3801	broad.mit.edu	37	chr16	57805461	57805461	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccattctgctcacctggctGtgctcacaacctgggcaggg	12	14	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57805461	C	C	57805461	3	2	184	1	0	0	0	0	1	0	0	0	8384	1368	48	4	2051	4	KIFC3	16	57805461	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	9437000	57805461	32549292	361	148024											
LRRC36	55282	broad.mit.edu	37	chr16	67384094	67384094	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagttgtaaataaattattCtatgtggcagctctagggag	11	4	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67384094	T	T	67384094	1	4	184	0	1	0	0	0	0	0	0	0	9077	928	32	4		4	LRRC36	16	67384094	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	9578633	67384094	22970659	362	148025											
CTRL	1506	broad.mit.edu	37	chr16	67963803	67963803	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggacagggcctgggtcttTaatgggttgagctggggagg	20	5	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67963803	C	C	67963803	1	2	184	0	1	0	0	0	0	0	0	0	4062	1769	61	5		5	CTRL	16	67963803	3'UTR	SNP	T	TCGA-64-1677-01A-01W-0928-08	579709	67963803	22390950	363	148026											
SMG6	23293	broad.mit.edu	37	chr17	2200651	2200651	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagaagtcactaccctaTaaaaagaaaaaaagaaatga	5	6	2	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2200651	A	A	2200651	1	1	184	0	1	0	0	0	0	0	0	0	14911	1421	49	5		5	SMG6	17	2200651	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08		2200651	78994559	364	148027											
PELP1	27043	broad.mit.edu	37	chr17	4575522	4575522	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcctcctcttcttcctcttCaaaatattcctcttcatcct	0	16	6	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4575522	G	G	4575522	3	3	184	1	0	0	0	0	1	0	0	0	11819	835	29	4	636	4	PELP1	17	4575522	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	2374871	4575522	76619688	365	148028											
TP53	7157	broad.mit.edu	37	chr17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgtagatggccatggCgcggacgcgggtgccgggcg	19	11	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7578455	G	G	7578455	3	3	184	1	0	0	0	0	1	0	0	0	16505	768	27	4	823	4	TP53	17	7578455	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3002933	7578455	73616755	366	148029											
TP53	7157	broad.mit.edu	37	chr17	7579536	7579545	+	Frame_Shift_Del	DEL	CAATATCGTC	-	-													gtcttcagtgaaccattgttCaatatcgtccggggacagca							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7579545	-	-	7579536	7	5	184	1	0	1	0	1	0	0	0	0	16505	835	29	0	1151	0	TP53	17	7579536	Frame_Shift_Del	DEL	CAATATCGTC	TCGA-64-1677-01A-01W-0928-08	1081	7579536	73615674	367	148030											
ARHGEF15	22899	broad.mit.edu	37	chr17	8219171	8219171	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggggcctttctcggtgtAtgtggattatgtgcggaacc	15	7	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8219171	T	T	8219171	3	4	184	1	0	0	0	0	1	0	0	0	900	449	16	5	1546	5	ARHGEF15	17	8219171	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	639635	8219171	72976039	368	148031											
GAS7	8522	broad.mit.edu	37	chr17	9873091	9873091	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccattcactgcagggacaGagacacggctcagatgctgt	11	11	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9873091	A	A	9873091	1	1	184	0	1	0	0	0	0	0	0	0	6312	957	33	4		4	GAS7	17	9873091	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1653920	9873091	71322119	369	148032											
GAS7	8522	broad.mit.edu	37	chr17	9885218	9885218	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctctggtgaaagaagagcAaagaaaatcactttgagaat	10	5	2	5			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9885218	T	T	9885218	1	4	184	0	1	0	0	0	0	0	0	0	6312	145	5	5		5	GAS7	17	9885218	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	12127	9885218	71309992	370	148033											
MYH13	8735	broad.mit.edu	37	chr17	10212691	10212691	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccattcctgcgctccacgaTggccagctgctccttgaggt	11	15	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10212691	C	C	10212691	3	2	184	1	0	0	0	0	1	0	0	0	10126	1464	51	5	815	5	MYH13	17	10212691	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	327473	10212691	70982519	371	148034											
MYH1	4619	broad.mit.edu	37	chr17	10409227	10409227	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctcagctgatgcaggacAagctcatgctccatggcacc	9	15	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10409227	T	T	10409227	2	4	184	1	0	0	0	0	0	0	0	1	10123	117	5	5		5	MYH1	17	10409227	Silent	SNP	A	TCGA-64-1677-01A-01W-0928-08	196536	10409227	70785983	372	148035											
CCDC144NL	339184	broad.mit.edu	37	chr17	20799042	20799042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccaggagccaagacgtGctccaccccagggacgtcgc	12	16	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20799042	T	T	20799042	3	4	184	1	0	0	0	0	1	0	0	0	2805	1319	46	3	389	3	CCDC144NL	17	20799042	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	10389815	20799042	60396168	373	148036											
PSMD11	5717	broad.mit.edu	37	chr17	30804536	30804536	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atggtttgtctctttattctCagacagaagcattaaaatgc	7	7	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30804536	G	G	30804536	1	3	184	0	1	0	0	0	0	0	0	0	12800	841	29	4		4	PSMD11	17	30804536	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	10005494	30804536	50390674	374	148037											
LIG3	3980	broad.mit.edu	37	chr17	33328387	33328387	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cccgaatccgagatgataagGactggaaatctgccactaac	9	11	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33328387	C	C	33328387	3	2	184	1	0	0	0	0	1	0	0	0	8854	1174	41	4	2505	4	LIG3	17	33328387	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2523851	33328387	47866823	375	148038											
ACACA	31	broad.mit.edu	37	chr17	35692228	35692229	+	Intron	INS	-	G	G													aatccctatacctgaacaatINSggaacaacttcagcacagaa							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35692229	G	G	35692228	6	5	184	0	1	1	1	0	0	0	0	0	106	1479	51	0		0	ACACA	17	35692228	Intron	INS	-	TCGA-64-1677-01A-01W-0928-08	2363841	35692228	45502982	376	148039											
TADA2A	6871	broad.mit.edu	37	chr17	35830621	35830621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgccagcagtggctccGccggcaagctgacatgtgag	14	12	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35830621	A	A	35830621	3	1	184	1	0	0	0	0	1	0	0	0	15629	1087	38	4	1154	4	TADA2A	17	35830621	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	138393	35830621	45364589	377	148040											
RPL19	6143	broad.mit.edu	37	chr17	37358692	37358692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcaggcacatgggcataGgtaagtgtggtcatcttctc	14	8	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37358692	T	T	37358692	3	4	184	1	0	0	0	0	1	0	0	0	13677	1014	35	2	245	2	RPL19	17	37358692	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1528071	37358692	43836518	378	148041											
MED1	5469	broad.mit.edu	37	chr17	37564803	37564803	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagaacctgaactgataGgggacttggctttagaggat	12	8	0	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37564803	A	A	37564803	3	1	184	1	0	0	0	0	1	0	0	0	9518	1000	35	4	1078	4	MED1	17	37564803	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	206111	37564803	43630407	379	148042											
KRTAP1-3	81850	broad.mit.edu	37	chr17	39191008	39191009	+	Missense_Mutation	DNP	GG	AT	AT													cagcttggctggcagcagctGgagccgcatgtcccactggt					rs71300033		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	39191009	AT	AT	39191008	3	1	184	1	0	0	0	0	1	0	0	0	8574	1335	47	4	441	4	KRTAP1-3	17	39191008	Missense_Mutation	DNP	GG	TCGA-64-1677-01A-01W-0928-08	1626205	39191008	42004202	380	148043											
KRTAP1-3	81850	broad.mit.edu	37	chr17	39191048	39191048	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggagcagctgggatatccaCagaagctggtctggcagcag	15	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39191048	G	G	39191048	3	3	184	1	0	0	0	0	1	0	0	0	8574	478	17	4	481	4	KRTAP1-3	17	39191048	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	40	39191048	42004162	381	148044											
KRT38	8687	broad.mit.edu	37	chr17	39595502	39595503	+	Nonsense_Mutation	DNP	CC	AG	AG													ctgctcctccttcagggactCctgctgggcctccaggtcgg							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	39595503	AG	AG	39595502	4	1	184	1	0	0	0	0	0	1	0	0	8546	864	30	3	705	3	KRT38	17	39595502	Nonsense_Mutation	DNP	CC	TCGA-64-1677-01A-01W-0928-08	404454	39595502	41599708	382	148045											
SPAG9	9043	broad.mit.edu	37	chr17	49075774	49075774	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaccactaacttaatttaGaatataatgattaatttgga	5	4	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49075774	C	C	49075774	1	2	184	0	1	0	0	0	0	0	0	0	15101	957	33	4		4	SPAG9	17	49075774	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	9480272	49075774	32119436	383	148046											
STXBP4	252983	broad.mit.edu	37	chr17	53155556	53155559	+	Splice_Site	DEL	GTAA	-	-													agcttcttcattttgtagagGtaagtttttctgttctatta							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53155559	-	-	53155556	8	5	184	1	0	1	0	1	0	0	1	0	15473	1275	44	0	1352	0	STXBP4	17	53155556	Splice_Site	DEL	GTAA	TCGA-64-1677-01A-01W-0928-08	4079782	53155556	28039654	384	148047											
TUBD1	51174	broad.mit.edu	37	chr17	57958547	57958547	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaattcagagagaaagataCaggatagagaggttttttca	11	3	2	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57958547	G	G	57958547	1	3	184	0	1	0	0	0	0	0	0	0	16888	493	17	4		4	TUBD1	17	57958547	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	4802991	57958547	23236663	385	148048											
BRIP1	83990	broad.mit.edu	37	chr17	59760881	59760881	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgaatctacttcttttaTagttctaatttcaaaaaggt	6	6	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59760881	G	G	59760881	3	3	184	1	0	0	0	0	1	0	0	0	1523	1406	49	5	227	5	BRIP1	17	59760881	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	1802334	59760881	21434329	386	148049											
SRP68	6730	broad.mit.edu	37	chr17	74046574	74046574	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acactcgctgagcattgattCaaacaggcgctccttagttt	8	11	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74046574	G	G	74046574	3	3	184	1	0	0	0	0	1	0	0	0	15274	835	29	4	903	4	SRP68	17	74046574	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	14285693	74046574	7148636	387	148050											
SRP68	6730	broad.mit.edu	37	chr17	74046604	74046604	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccttagtttcttcgctttCagcctaaacaagggcagatc	7	12	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74046604	A	A	74046604	4	1	184	1	0	0	0	0	0	1	0	0	15274	835	29	3	933	3	SRP68	17	74046604	Nonsense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	30	74046604	7148606	388	148051											
CIDEA	1149	broad.mit.edu	37	chr18	12274208	12274208	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgccttaacgtgaaggcCaccatgtatgagatgtactc	11	10	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12274208	A	A	12274208	2	1	184	1	0	0	0	0	0	0	0	1	3456	581	21	2		2	CIDEA	18	12274208	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08		12274208	65803040	389	148052											
DSG1	1828	broad.mit.edu	37	chr18	28934418	28934418	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggataccctgggaccTaaatttaagaagttggcaga	10	7	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28934418	A	A	28934418	2	1	184	1	0	0	0	0	0	0	0	1	4816	1509	53	5		5	DSG1	18	28934418	Silent	SNP	T	TCGA-64-1677-01A-01W-0928-08	16660210	28934418	49142830	390	148053											
ONECUT2	9480	broad.mit.edu	37	chr18	55143772	55143772	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgccgaacactcttcgccatCttcaaggagaacaaacgccc	7	16	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55143772	G	G	55143772	3	3	184	1	0	0	0	0	1	0	0	0	10963	903	32	4	1338	4	ONECUT2	18	55143772	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	26209354	55143772	22933476	391	148054											
ATP8B1	5205	broad.mit.edu	37	chr18	55321184	55321184	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacttctctaacgcattctCatctgtccagaagtgtccct	7	13	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55321184	T	T	55321184	1	4	184	0	1	0	0	0	0	0	0	0	1198	841	29	4		4	ATP8B1	18	55321184	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	177412	55321184	22756064	392	148055											
ALPK2	115701	broad.mit.edu	37	chr18	56204800	56204800	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgcttttgcacgtagaCactgaagtctcagacacttg	9	10	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56204800	A	A	56204800	2	1	184	1	0	0	0	0	0	0	0	1	545	465	17	3		3	ALPK2	18	56204800	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	883616	56204800	21872448	393	148056											
CDH20	28316	broad.mit.edu	37	chr18	59212284	59212284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagacagtgagtgcggtgGaccaagatgacccacgcaat	12	11	0	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59212284	T	T	59212284	3	4	184	1	0	0	0	0	1	0	0	0	3136	1174	41	3	1589	3	CDH20	18	59212284	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3007484	59212284	18864964	394	148057											
SERPINB2	5055	broad.mit.edu	37	chr18	61562418	61562418	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagatctaggaccattttagAgccacctgatagccatctgt	8	10	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61562418	T	T	61562418	1	4	184	0	1	0	0	0	0	0	0	0	14214	319	11	5		5	SERPINB2	18	61562418	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	2350134	61562418	16514830	395	148058											
CDH19	28513	broad.mit.edu	37	chr18	64235609	64235609	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccttcaaattttaaacctGcttcattgttaatatatctt	2	8	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64235609	C	C	64235609	1	2	184	0	1	0	0	0	0	0	0	0	3134	1334	46	4		4	CDH19	18	64235609	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2673191	64235609	13841639	396	148059											
CNDP2	55748	broad.mit.edu	37	chr18	72185926	72185926	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagggcccttcgcacgtctGacaggactctgctatatcgc	11	14	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72185926	C	C	72185926	1	2	184	0	1	0	0	0	0	0	0	0	3626	1305	45	4		4	CNDP2	18	72185926	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	7950317	72185926	5891322	397	148060											
XAB2	56949	broad.mit.edu	37	chr19	7692716	7692716	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcccgacgcgccttcagGtatcggtaccagagtttgta	12	11	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7692716	A	A	7692716	2	1	184	1	0	0	0	0	0	0	0	1	17545	1256	44	4		4	XAB2	19	7692716	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08		7692716	51436267	398	148061											
MUC16	94025	broad.mit.edu	37	chr19	8966817	8966817	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctgttggggacagacCtggaaggggacagggataag	19	6	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8966817	A	A	8966817	5	1	184	1	0	0	0	0	0	0	1	0	10067	695	24	2	403	2	MUC16	19	8966817	Splice_Site	SNP	C	TCGA-64-1677-01A-01W-0928-08	1274101	8966817	50162166	399	148062											
MUC16	94025	broad.mit.edu	37	chr19	9010589	9010589	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttatttgagtgaaaatggCagagatgttcacactcatca	8	7	3	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9010589	G	G	9010589	1	3	184	0	1	0	0	0	0	0	0	0	10067	725	25	4		4	MUC16	19	9010589	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	43772	9010589	50118394	400	148063											
DNMT1	1786	broad.mit.edu	37	chr19	10283905	10283905	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgccaggagcttccccaaaGaagcagttttcataaagctc	9	11	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10283905	C	C	10283905	1	2	184	0	1	0	0	0	0	0	0	0	4715	957	33	4		4	DNMT1	19	10283905	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1273316	10283905	48845078	401	148064											
PDE4A	5141	broad.mit.edu	37	chr19	10565641	10565641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggaggggggacatttgGggtagagagggggctgcccc	21	6	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10565641	T	T	10565641	1	4	184	0	1	0	0	0	0	0	0	0	11733	1247	43	2		2	PDE4A	19	10565641	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	281736	10565641	48563342	402	148065											
OCEL1	79629	broad.mit.edu	37	chr19	17339045	17339047	+	Intron	DEL	TTC	-	-													caactctccctaaaccccctTtctactcctccccttgcaga							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17339047	-	-	17339045	6	5	184	0	1	1	0	1	0	0	0	0	10911	1856	64	0		0	OCEL1	19	17339045	Intron	DEL	TTC	TCGA-64-1677-01A-01W-0928-08	6773404	17339045	41789938	403	148066											
ARRDC2	27106	broad.mit.edu	37	chr19	18120660	18120660	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgctgcctcgggcagccGtggtgcagacacagacgttc	14	13	0	2	rs147746417		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18120660	A	A	18120660	3	1	184	1	0	0	0	0	1	0	0	0	987	1145	40	4	942	4	ARRDC2	19	18120660	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	781615	18120660	41008323	404	148067											
TSHZ3	57616	broad.mit.edu	37	chr19	31767488	31767488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagagacatacagaaggtGgtcttccggagatttcccgt	11	10	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31767488	T	T	31767488	3	4	184	1	0	0	0	0	1	0	0	0	16750	1348	47	2	38	2	TSHZ3	19	31767488	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	13646828	31767488	27361495	405	148068											
KIAA0355	9710	broad.mit.edu	37	chr19	34833289	34833289	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagggacctagaaataacaCctggcccaaccgtgaccaaa	9	13	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34833289	G	G	34833289	3	3	184	1	0	0	0	0	1	0	0	0	8240	507	18	4	2484	4	KIAA0355	19	34833289	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3065801	34833289	24295694	406	148069											
ZNF568	374900	broad.mit.edu	37	chr19	37441464	37441464	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acatcagaaaattcacactgGagagaaaccttatgaatgca	7	8	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37441464	C	C	37441464	3	2	184	1	0	0	0	0	1	0	0	0	18126	1174	41	4	1427	4	ZNF568	19	37441464	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2608175	37441464	21687519	407	148070											
ZNF571	51276	broad.mit.edu	37	chr19	38055625	38055625	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagtaagttctgagccacGactaaaggccctcccacatt	8	13	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38055625	A	A	38055625	3	1	184	1	0	0	0	0	1	0	0	0	18130	1058	37	4	128	4	ZNF571	19	38055625	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	614161	38055625	21073358	408	148071											
HIPK4	147746	broad.mit.edu	37	chr19	40886395	40886395	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcagccgaatgaggttgctGaagttggagtcggacttgga	15	7	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40886395	T	T	40886395	3	4	184	1	0	0	0	0	1	0	0	0	7186	1281	45	3	355	3	HIPK4	19	40886395	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	2830770	40886395	18242588	409	148072											
CCDC97	90324	broad.mit.edu	37	chr19	41828552	41828552	+	Missense_Mutation	SNP	G	A	A													tcgacatcgtggcacgggatGaggaggagaggtactttgat							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41828552	A	A	41828552	3	1	184	1	0	0	0	0	1	0	0	0	2903	1291	45	4	982	4	CCDC97	19	41828552	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	942157	41828552	17300431	410	148073	631	2									
CCDC97	90324	broad.mit.edu	37	chr19	41828555	41828555	+	Missense_Mutation	SNP	G	A	A													acatcgtggcacgggatgagGaggagaggtactttgatgag							TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41828555	A	A	41828555	3	1	184	1	0	0	0	0	1	0	0	0	2903	1175	41	4	985	4	CCDC97	19	41828555	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3	41828555	17300428	411	148074	631	2									
PRR19	284338	broad.mit.edu	37	chr19	42813884	42813884	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acgatcctcctgtggccattCgggatccacctgtggtccct	10	15	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42813884	T	T	42813884	3	4	184	1	0	0	0	0	1	0	0	0	12697	875	31	4	150	4	PRR19	19	42813884	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	985329	42813884	16315099	412	148075											
PSG5	5673	broad.mit.edu	37	chr19	43687653	43687653	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaagaaaacaaagtcctctCcttgatcctttcatgacagt	6	10	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43687653	A	A	43687653	1	1	184	0	1	0	0	0	0	0	0	0	12764	870	30	3		3	PSG5	19	43687653	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	873769	43687653	15441330	413	148076											
ZNF225	7768	broad.mit.edu	37	chr19	44622435	44622435	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaactgtaccgagaagtgaTgctggagaacttcaggaacc	12	8	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44622435	A	A	44622435	3	1	184	1	0	0	0	0	1	0	0	0	17905	1464	51	5	116	5	ZNF225	19	44622435	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	934782	44622435	14506548	414	148077											
ZFP112	7771	broad.mit.edu	37	chr19	44831777	44831777	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctgtgtggactctctggtGagcctgaagatttgatctct	11	9	2	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44831777	A	A	44831777	3	1	184	1	0	0	0	0	1	0	0	0	17764	1290	45	4	194	4	ZFP112	19	44831777	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	209342	44831777	14297206	415	148078											
EML2	24139	broad.mit.edu	37	chr19	46133262	46133262	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcccacaccgagagcatgtGatcattggattcatccactg	9	12	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46133262	A	A	46133262	3	1	184	1	0	0	0	0	1	0	0	0	5139	1290	45	4	1448	4	EML2	19	46133262	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1301485	46133262	12995721	416	148079											
SIGLEC9	27180	broad.mit.edu	37	chr19	51633160	51633160	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctcaggggcccctgactGaaccttgggcagaagacagt	13	11	1	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51633160	T	T	51633160	4	4	184	1	0	0	0	0	0	1	0	0	14428	1291	45	3	1242	3	SIGLEC9	19	51633160	Nonsense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	5499898	51633160	7495823	417	148080											
KIR2DL3	3804	broad.mit.edu	37	chr19	55270351	55270351	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgaccctctggacatcgtCatcacaggtgagagtgtccg	12	11	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55270351	G	G	55270351	1	3	184	0	1	0	0	0	0	0	0	0	8388	841	29	4		4	KIR2DL3	19	55270351	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	3637191	55270351	3858632	418	148081											
KIR2DL3	3804	broad.mit.edu	37	chr19	55270494	55270494	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgacttggtgaggtctgtAccaacagagacagagaaaca	11	8	1	4			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55270494	G	G	55270494	1	3	184	0	1	0	0	0	0	0	0	0	8388	406	14	5		5	KIR2DL3	19	55270494	Intron	SNP	A	TCGA-64-1677-01A-01W-0928-08	143	55270494	3858489	419	148082											
NLRP2	55655	broad.mit.edu	37	chr19	55481465	55481465	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgagttgagcaagttcaagTatctgatcacgaccttctcc	8	10	4	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55481465	A	A	55481465	3	1	184	1	0	0	0	0	1	0	0	0	10572	1638	57	5	84	5	NLRP2	19	55481465	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	210971	55481465	3647518	420	148083											
NLRP8	126205	broad.mit.edu	37	chr19	56467063	56467063	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctgatagcgagtcccagaGgaagcaaaagctatctctct	10	11	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56467063	C	C	56467063	3	2	184	1	0	0	0	0	1	0	0	0	10578	1001	35	4	1649	4	NLRP8	19	56467063	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	985598	56467063	2661920	421	148084											
ZNF444	55311	broad.mit.edu	37	chr19	56669884	56669884	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcagcctcccccgatGggtcgtcagcaacgagggtg	15	14	1	0	rs61736532	byFrequency	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56669884	A	A	56669884	3	1	184	1	0	0	0	0	1	0	0	0	18044	1348	47	4	325	4	ZNF444	19	56669884	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	202821	56669884	2459099	422	148085											
PEG3	5178	broad.mit.edu	37	chr19	57327147	57327147	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagtcttcatagttgcgaTtcttactgcccccttcacaa	6	13	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57327147	A	A	57327147	3	1	184	1	0	0	0	0	1	0	0	0	11814	1493	52	5	2107	5	PEG3	19	57327147	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	657263	57327147	1801836	423	148086											
ZIM3	114026	broad.mit.edu	37	chr19	57646337	57646337	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaggtatgacctgtcagcGaaggctttaccgcattcaga	10	10	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57646337	A	A	57646337	2	1	184	1	0	0	0	0	0	0	0	1	17811	1049	37	4		4	ZIM3	19	57646337	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08	319190	57646337	1482646	424	148087											
ZNF416	55659	broad.mit.edu	37	chr19	58085147	58085147	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catttaaaaaactattttctGaataattggtgttctgacat	5	5	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58085147	A	A	58085147	1	1	184	0	1	0	0	0	0	0	0	0	18020	1305	45	4		4	ZNF416	19	58085147	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	438810	58085147	1043836	425	148088											
TGM3	7053	broad.mit.edu	37	chr20	2290900	2290900	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtagtggtggctggagtgcGgtgcttcaggccagcaatgg	18	7	1	0	rs140997555		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2290900	A	A	2290900	2	1	184	1	0	0	0	0	0	0	0	1	15954	1103	39	4		4	TGM3	20	2290900	Silent	SNP	G	TCGA-64-1677-01A-01W-0928-08		2290900	60734620	426	148089											
ACSS1	84532	broad.mit.edu	37	chr20	25003791	25003791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctctgagagcagcactcCccctccgcagcaggactcca	8	19	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25003791	A	A	25003791	1	1	184	0	1	0	0	0	0	0	0	0	188	638	22	2		2	ACSS1	20	25003791	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	22712891	25003791	38021729	427	148090											
TGM2	7052	broad.mit.edu	37	chr20	36760911	36760911	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacgctcttctctgcagaaGgggagaaaggagggtgctca	15	8	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36760911	C	C	36760911	1	2	184	0	1	0	0	0	0	0	0	0	15953	1015	35	4		4	TGM2	20	36760911	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	11757120	36760911	26264609	428	148091											
EMILIN3	90187	broad.mit.edu	37	chr20	39990047	39990047	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catggctccacaggccctctCtgggcctcagtggctcagtg	12	15	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39990047	T	T	39990047	3	4	184	1	0	0	0	0	1	0	0	0	5137	913	32	4	142	4	EMILIN3	20	39990047	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3229136	39990047	23035473	429	148092											
TOX2	84969	broad.mit.edu	37	chr20	42683242	42683242	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggacacactttgaaggtctGaaaccaggcccagctctgga	11	11	2	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42683242	A	A	42683242	1	1	184	0	1	0	0	0	0	0	0	0	16502	1305	45	4		4	TOX2	20	42683242	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	2693195	42683242	20342278	430	148093											
EYA2	2139	broad.mit.edu	37	chr20	45725888	45725888	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgtcctggaaattgtgcgGacagtttatgaggcagcttc	12	7	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45725888	T	T	45725888	1	4	184	0	1	0	0	0	0	0	0	0	5372	1189	41	3		3	EYA2	20	45725888	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	3042646	45725888	17299632	431	148094											
MOCS3	27304	broad.mit.edu	37	chr20	49575810	49575810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccttttcggccgccgcctCgctgcgccgcctcaattcgg	12	18	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49575810	T	T	49575810	3	4	184	1	0	0	0	0	1	0	0	0	9786	893	31	4	433	4	MOCS3	20	49575810	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3849922	49575810	13449710	432	148095											
DOK5	55816	broad.mit.edu	37	chr20	53205055	53205055	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ataatgtgaagaacgtagctCgattgccaaaaagcaccaag	9	8	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53205055	G	G	53205055	3	3	184	1	0	0	0	0	1	0	0	0	4740	876	31	4	218	4	DOK5	20	53205055	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3629245	53205055	9820465	433	148096											
PCK1	5105	broad.mit.edu	37	chr20	56138667	56138667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaagaagtacctggcggCcgcatttcccagcgcctgcg	13	13	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56138667	A	A	56138667	3	1	184	1	0	0	0	0	1	0	0	0	11675	739	26	3	863	3	PCK1	20	56138667	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	2933612	56138667	6886853	434	148097											
KCNQ2	3785	broad.mit.edu	37	chr20	62073706	62073706	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagcctggtcccagcacaGggacaggggtgtatcagcag	16	10	1	1	rs144570836	by1000genomes	TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62073706	A	A	62073706	1	1	184	0	1	0	0	0	0	0	0	0	8153	1015	35	4		4	KCNQ2	20	62073706	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	5935039	62073706	951814	435	148098											
TPTE	7179	broad.mit.edu	37	chr21	10942694	10942694	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaatacaagtaaatcaacGgttaagtgtcacaaacctgt	7	7	2	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10942694	C	C	10942694	1	2	184	0	1	0	0	0	0	0	0	0	16554	1131	39	4		4	TPTE	21	10942694	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08		10942694	37187201	436	148099											
BAGE2	85319	broad.mit.edu	37	chr21	11039022	11039022	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaacatctttcacacaacCctcaattgtaggagtcattt	5	10	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039022	A	A	11039022	1	1	184	0	1	0	0	0	0	0	0	0	1297	638	22	2		2	BAGE2	21	11039022	3'UTR	SNP	C	TCGA-64-1677-01A-01W-0928-08	96328	11039022	37090873	437	148100											
GRIK1	2897	broad.mit.edu	37	chr21	30949386	30949386	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgggggattccattctctcTactgtcaagaaggcagccag	11	10	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30949386	A	A	30949386	2	1	184	1	0	0	0	0	0	0	0	1	6839	1509	53	5		5	GRIK1	21	30949386	Silent	SNP	T	TCGA-64-1677-01A-01W-0928-08	19910364	30949386	17180509	438	148101											
CHAF1B	8208	broad.mit.edu	37	chr21	37760059	37760059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccttcagagattcttcGggaaccagatagatacctgt	9	10	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37760059	T	T	37760059	1	4	184	0	1	0	0	0	0	0	0	0	3343	1131	39	1		1	CHAF1B	21	37760059	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	6810673	37760059	10369836	439	148102											
DSCAM	1826	broad.mit.edu	37	chr21	41741116	41741116	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtagttatacaatccatcttCattctgtacatctttaatat	3	8	4	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41741116	T	T	41741116	3	4	184	1	0	0	0	0	1	0	0	0	4808	835	29	4	5593	4	DSCAM	21	41741116	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3981057	41741116	6388779	440	148103											
P2RX6	9127	broad.mit.edu	37	chr22	21377428	21377428	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccctgctggcccaggcCcagaacttcacactgttcat	9	16	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21377428	A	A	21377428	2	1	184	1	0	0	0	0	0	0	0	1	11438	610	22	2		2	P2RX6	22	21377428	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08		21377428	29927138	441	148104											
MOV10L1	54456	broad.mit.edu	37	chr22	50582592	50582592	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacagtgctgctgacctcGtgtgtctgcggctgcacgag	13	13	1	1	rs147541728		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50582592	T	T	50582592	3	4	184	1	0	0	0	0	1	0	0	0	9813	1145	40	3	2536	3	MOV10L1	22	50582592	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	29205164	50582592	721974	442	148105											
KAL1	3730	broad.mit.edu	37	chrX	8536381	8536381	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccacaacatagtcacagtCtggctggagtttctccagga	9	11	3	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8536381	T	T	8536381	3	4	184	1	0	0	0	0	1	0	0	0	8044	913	32	4	971	4	KAL1	23	8536381	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08		8536381	146734179	443	148106											
TCEANC	170082	broad.mit.edu	37	chrX	13680667	13680667	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagctgccagagcttctcttAttgagcaactgatgtccaaa	8	10	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13680667	G	G	13680667	3	3	184	1	0	0	0	0	1	0	0	0	15800	449	16	5	136	5	TCEANC	23	13680667	Missense_Mutation	SNP	A	TCGA-64-1677-01A-01W-0928-08	5144286	13680667	141589893	444	148107											
CDKL5	6792	broad.mit.edu	37	chrX	18606111	18606111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggacatgtggtcggtgGgctgtattcttggggagctt	17	7	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18606111	T	T	18606111	3	4	184	1	0	0	0	0	1	0	0	0	3187	1232	43	2	622	2	CDKL5	23	18606111	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	4925444	18606111	136664449	445	148108											
PPEF1	5475	broad.mit.edu	37	chrX	18768133	18768133	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcccaataactgttgaaaGaatggatgaacataccacag	8	8	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18768133	T	T	18768133	1	4	184	0	1	0	0	0	0	0	0	0	12403	957	33	3		3	PPEF1	23	18768133	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	162022	18768133	136502427	446	148109											
MAP7D2	256714	broad.mit.edu	37	chrX	20043822	20043822	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgctgttttcggctttccctCctgcggcagcagcatgcttc	10	15	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043822	T	T	20043822	3	4	184	1	0	0	0	0	1	0	0	0	9360	855	30	4	1097	4	MAP7D2	23	20043822	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	1275689	20043822	135226738	447	148110											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29414538	29414538	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attttctactgccaaccagaGaacctgaaatcctttggtac	6	11	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29414538	C	C	29414538	3	2	184	1	0	0	0	0	1	0	0	0	7731	943	33	4	536	4	IL1RAPL1	23	29414538	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	9370716	29414538	125856022	448	148111											
SHROOM4	57477	broad.mit.edu	37	chrX	50350944	50350944	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcccgggtgctttggggCgccaagctgatgtgactctc	15	12	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50350944	A	A	50350944	2	1	184	1	0	0	0	0	0	0	0	1	14409	755	27	3		3	SHROOM4	23	50350944	Silent	SNP	C	TCGA-64-1677-01A-01W-0928-08	20936406	50350944	104919616	449	148112											
SSX7	280658	broad.mit.edu	37	chrX	52676931	52676931	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactttattgggtatcaggCattgagctgagtaagatatt	10	5	1	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52676931	T	T	52676931	1	4	184	0	1	0	0	0	0	0	0	0	15327	725	25	4		4	SSX7	23	52676931	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	2325987	52676931	102593629	450	148113											
KDM5C	8242	broad.mit.edu	37	chrX	53245042	53245042	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgcagggttctgggctgtGactcagctcctccttgctct	13	12	3	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53245042	C	C	53245042	3	2	184	1	0	0	0	0	1	0	0	0	8205	1290	45	4	3962	4	KDM5C	23	53245042	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	568111	53245042	102025518	451	148114											
OPHN1	4983	broad.mit.edu	37	chrX	67518843	67518843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtagctgaagacttacCgatgttaatttcatcatcag	7	8	3	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67518843	A	A	67518843	3	1	184	1	0	0	0	0	1	0	0	0	10969	666	23	1	2246	1	OPHN1	23	67518843	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	14273801	67518843	87751717	452	148115											
P2RY4	5030	broad.mit.edu	37	chrX	69478529	69478529	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accacagagctgacggagctGacgtcgatatttgtccccag	11	12	0	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69478529	C	C	69478529	3	2	184	1	0	0	0	0	1	0	0	0	11447	1299	45	4	155	4	P2RY4	23	69478529	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	1959686	69478529	85792031	453	148116											
NONO	4841	broad.mit.edu	37	chrX	70518413	70518413	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttttgtttggtcttgggtGaactatgtagcttctgctgc	11	6	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70518413	A	A	70518413	1	1	184	0	1	0	0	0	0	0	0	0	10629	1305	45	4		4	NONO	23	70518413	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	1039884	70518413	84752147	454	148117											
DACH2	117154	broad.mit.edu	37	chrX	86067861	86067861	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaattttgtttttgcagaaGaggtaccagttcaaattcca	7	7	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86067861	A	A	86067861	3	1	184	1	0	0	0	0	1	0	0	0	4254	943	33	4	1273	4	DACH2	23	86067861	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	15549448	86067861	69202699	455	148118											
CENPI	2491	broad.mit.edu	37	chrX	100382593	100382593	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtctgaatagaagtggatCatttccactagaacaacttc	7	8	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100382593	T	T	100382593	3	4	184	1	0	0	0	0	1	0	0	0	3263	838	29	4	1047	4	CENPI	23	100382593	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	14314732	100382593	54887967	456	148119											
NXF3	56000	broad.mit.edu	37	chrX	102332421	102332421	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatctcctgacctcgtgatTcgcccgcctcggcctcccaa	7	19	1	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102332421	C	C	102332421	1	2	184	0	1	0	0	0	0	0	0	0	10880	1798	62	5		5	NXF3	23	102332421	Intron	SNP	T	TCGA-64-1677-01A-01W-0928-08	1949828	102332421	52938139	457	148120											
MUM1L1	139221	broad.mit.edu	37	chrX	105450161	105450161	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctttgtcacctttgtcatcaGatatgctcattatgcccaaa	5	11	4	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105450161	C	C	105450161	3	2	184	1	0	0	0	0	1	0	0	0	10080	942	33	4	738	4	MUM1L1	23	105450161	Missense_Mutation	SNP	G	TCGA-64-1677-01A-01W-0928-08	3117740	105450161	49820399	458	148121											
RIPPLY1	92129	broad.mit.edu	37	chrX	106144762	106144762	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcagccgttgccccacCagcagcctgtccaaagcaaa	8	17	1	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106144762	G	G	106144762	3	3	184	1	0	0	0	0	1	0	0	0	13495	594	21	4	225	4	RIPPLY1	23	106144762	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	694601	106144762	49125798	459	148122											
FAM70A	55026	broad.mit.edu	37	chrX	119438435	119438435	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactaagaaggttttcctttCctattcctaccggtaactga	6	11	0	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119438435	T	T	119438435	1	4	184	0	1	0	0	0	0	0	0	0	5656	870	30	4		4	FAM70A	23	119438435	Intron	SNP	C	TCGA-64-1677-01A-01W-0928-08	13293673	119438435	35832125	460	148123											
XPNPEP2	7512	broad.mit.edu	37	chrX	128890409	128890409	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaccaaggcctcccacgtGacccagtgcagggttaggct	11	16	0	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128890409	T	T	128890409	1	4	184	0	1	0	0	0	0	0	0	0	17570	1305	45	3		3	XPNPEP2	23	128890409	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	9451974	128890409	26380151	461	148124											
MAP7D3	79649	broad.mit.edu	37	chrX	135301892	135301892	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accaaggctctggcctaaaaGaagctttgtcctttaattaa	7	9	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135301892	C	C	135301892	1	2	184	0	1	0	0	0	0	0	0	0	9361	957	33	4		4	MAP7D3	23	135301892	Intron	SNP	G	TCGA-64-1677-01A-01W-0928-08	6411483	135301892	19968668	462	148125											
MAGEC1	9947	broad.mit.edu	37	chrX	140995615	140995615	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgaggggcctgcccagtctCctctccagagtcctgtgagc	12	15	2	3			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140995615	G	G	140995615	3	3	184	1	0	0	0	0	1	0	0	0	9272	855	30	4	2431	4	MAGEC1	23	140995615	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	5693723	140995615	14274945	463	148126											
SLITRK2	84631	broad.mit.edu	37	chrX	144905709	144905709	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttgtcagatggaaccgTcttgtcaatgaatcacaata	7	8	4	2			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144905709	A	A	144905709	3	1	184	1	0	0	0	0	1	0	0	0	14857	1667	58	5	1768	5	SLITRK2	23	144905709	Missense_Mutation	SNP	T	TCGA-64-1677-01A-01W-0928-08	3910094	144905709	10364851	464	148127											
MAGEA11	4110	broad.mit.edu	37	chrX	148798513	148798513	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccacacccagcagtttcccTgtcctgtgtgaaatcaggcc	9	15	1	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148798513	A	A	148798513	1	1	184	0	1	0	0	0	0	0	0	0	9253	1595	55	5		5	MAGEA11	23	148798513	3'UTR	SNP	T	TCGA-64-1677-01A-01W-0928-08	3892804	148798513	6472047	465	148128											
MAGEA8	4107	broad.mit.edu	37	chrX	149013937	149013937	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcatgtggtcagggtcaaTgcaagagttcgcatttccta	12	8	2	1			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149013937	C	C	149013937	2	2	184	1	0	0	0	0	0	0	0	1	9261	1461	51	5		5	MAGEA8	23	149013937	Silent	SNP	T	TCGA-64-1677-01A-01W-0928-08	215424	149013937	6256623	466	148129											
PNCK	139728	broad.mit.edu	37	chrX	152937028	152937028	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatccaggggtcccacaggCggtgcctagcatgttcccag	12	13	0	0			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152937028	T	T	152937028	3	4	184	1	0	0	0	0	1	0	0	0	12240	768	27	4	541	4	PNCK	23	152937028	Missense_Mutation	SNP	C	TCGA-64-1677-01A-01W-0928-08	3923091	152937028	2333532	467	148130											
CCNL2	81669	broad.mit.edu	37	chr1	1326279	1326279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaagaactgcaatgccCcacccgggaacccaggtctt	10	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1326279	A	A	1326279	1	1	185	0	1	0	0	0	0	0	0	0	2962	638	22	2		2	CCNL2	1	1326279	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08		1326279	247924342	1	148131											
PARK7	11315	broad.mit.edu	37	chr1	8030915	8030915	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtgattggttagtggcttAatgataactttatgtatttt	10	2	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8030915	T	T	8030915	1	4	185	0	1	0	0	0	0	0	0	0	11544	377	13	5		5	PARK7	1	8030915	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	6704636	8030915	241219706	2	148132											
CASZ1	54897	broad.mit.edu	37	chr1	10725565	10725565	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgttcagcttcaggccaCccttgcgtttgggcgccatg	13	13	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10725565	T	T	10725565	3	4	185	1	0	0	0	0	1	0	0	0	2711	507	18	4	5271	4	CASZ1	1	10725565	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2694650	10725565	238525056	3	148133											
PTCHD2	57540	broad.mit.edu	37	chr1	11577459	11577459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctggctgcagggggcacCcaggccccctgactgcaggt	14	15	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11577459	A	A	11577459	1	1	185	0	1	0	0	0	0	0	0	0	12839	638	22	2		2	PTCHD2	1	11577459	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	851894	11577459	237673162	4	148134											
NBPF1	55672	broad.mit.edu	37	chr1	16891123	16891123	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctatggtacgttagtaaatGataaggggaggaagaaatgg	14	3	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16891123	A	A	16891123	1	1	185	0	1	0	0	0	0	0	0	0	10286	1305	45	4		4	NBPF1	1	16891123	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	5313664	16891123	232359498	5	148135											
PADI1	29943	broad.mit.edu	37	chr1	17566163	17566163	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacggcctccaggcagtgCtccctgagctatgtactgtc	11	13	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17566163	T	T	17566163	1	4	185	0	1	0	0	0	0	0	0	0	11471	812	28	4		4	PADI1	1	17566163	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	675040	17566163	231684458	6	148136											
AKR7A3	22977	broad.mit.edu	37	chr1	19610596	19610596	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctccaccagggcaatgcccTcaaagtggtgctccttccag	9	15	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19610596	A	A	19610596	3	1	185	1	0	0	0	0	1	0	0	0	476	1551	54	5	275	5	AKR7A3	1	19610596	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	2044433	19610596	229640025	7	148137											
KIF17	57576	broad.mit.edu	37	chr1	21016808	21016808	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatagtcggctttcagccgGgccaggcgctcttcatactc	10	13	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21016808	T	T	21016808	2	4	185	1	0	0	0	0	0	0	0	1	8349	1219	43	2		2	KIF17	1	21016808	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1406212	21016808	228233813	8	148138											
ARID1A	8289	broad.mit.edu	37	chr1	27106171	27106171	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaccgaggatggagctAagagttcagaggccatcaag	13	9	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27106171	T	T	27106171	4	4	185	1	0	0	0	0	0	1	0	0	915	363	13	5	5860	5	ARID1A	1	27106171	Nonsense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	6089363	27106171	222144450	9	148139											
TMEM222	84065	broad.mit.edu	37	chr1	27658583	27658583	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacaacatggcctttggaaAgcctgccaagtaagtgatga	12	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27658583	T	T	27658583	3	4	185	1	0	0	0	0	1	0	0	0	16268	72	3	5	312	5	TMEM222	1	27658583	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	552412	27658583	221592038	10	148140											
PHACTR4	65979	broad.mit.edu	37	chr1	28807101	28807101	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaatacggcaccagattgGaaacacactgatccggtagg	11	9	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28807101	A	A	28807101	3	1	185	1	0	0	0	0	1	0	0	0	11907	1174	41	4	1825	4	PHACTR4	1	28807101	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1148518	28807101	220443520	11	148141											
FABP3	2170	broad.mit.edu	37	chr1	31845872	31845872	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccaccatagtgatgctgGgctaggctgagagaagctac	13	10	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31845872	T	T	31845872	1	4	185	0	1	0	0	0	0	0	0	0	5404	1247	43	2		2	FABP3	1	31845872	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	3038771	31845872	217404749	12	148142											
DCDC2B	149069	broad.mit.edu	37	chr1	32678391	32678391	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtctaggccccacaggcaGggggtaggtgacgcagggga	18	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32678391	A	A	32678391	2	1	185	1	0	0	0	0	0	0	0	1	4319	991	35	4		4	DCDC2B	1	32678391	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	832519	32678391	216572230	13	148143											
AK2	204	broad.mit.edu	37	chr1	33478994	33478994	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgatcgacggatcaagggttCcccggtgatctgagaacagg	14	9	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33478994	T	T	33478994	3	4	185	1	0	0	0	0	1	0	0	0	440	864	30	4	224	4	AK2	1	33478994	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	800603	33478994	215771627	14	148144											
ZMYM4	9202	broad.mit.edu	37	chr1	35817108	35817108	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaaacaaaaaagaagaGgtggaaccatcccaaaatat	7	8	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35817108	A	A	35817108	1	1	185	0	1	0	0	0	0	0	0	0	17828	1015	35	4		4	ZMYM4	1	35817108	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2338114	35817108	213433513	15	148145											
RIMS3	9783	broad.mit.edu	37	chr1	41107607	41107607	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgttaaacatggtccccggGgtggcagggcctcaggcagc	15	13	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41107607	C	C	41107607	1	2	185	0	1	0	0	0	0	0	0	0	13480	1247	43	4		4	RIMS3	1	41107607	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	5290499	41107607	208143014	16	148146											
RIMKLA	284716	broad.mit.edu	37	chr1	42870366	42870366	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtgctgcttagaaaaatgGagctcccctttgaggagctt	11	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42870366	A	A	42870366	1	1	185	0	1	0	0	0	0	0	0	0	13476	1189	41	4		4	RIMKLA	1	42870366	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1762759	42870366	206380255	17	148147											
SPATA6	54558	broad.mit.edu	37	chr1	48850997	48850997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaccttataatccttgggtCggcagcagccaagatgagaa	10	10	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48850997	A	A	48850997	3	1	185	1	0	0	0	0	1	0	0	0	15129	884	31	3	593	3	SPATA6	1	48850997	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5980631	48850997	200399624	18	148148											
CC2D1B	200014	broad.mit.edu	37	chr1	52821917	52821917	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagggtcgaggccctgagcCtgggccagctgcaggatctc	17	12	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52821917	A	A	52821917	3	1	185	1	0	0	0	0	1	0	0	0	2753	680	24	2	591	2	CC2D1B	1	52821917	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3970920	52821917	196428704	19	148149											
LRRC40	55631	broad.mit.edu	37	chr1	70652948	70652948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataagcttaatttttacCtgacattaagtttctgaaga	5	5	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70652948	A	A	70652948	3	1	185	1	0	0	0	0	1	0	0	0	9085	695	24	2	1453	2	LRRC40	1	70652948	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	17831031	70652948	178597673	20	148150											
IFI44	10561	broad.mit.edu	37	chr1	79126232	79126232	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttaaaaaattctgtttGgcataggtgtggtacatgtg	11	3	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79126232	T	T	79126232	1	4	185	0	1	0	0	0	0	0	0	0	7587	1363	47	2		2	IFI44	1	79126232	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	8473284	79126232	170124389	21	148151											
MCOLN2	255231	broad.mit.edu	37	chr1	85418191	85418191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcttcttggagaggtcCtgaaggtctaattgaacaca	13	7	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85418191	A	A	85418191	3	1	185	1	0	0	0	0	1	0	0	0	9489	680	24	2	1152	2	MCOLN2	1	85418191	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	6291959	85418191	163832430	22	148152											
COL11A1	1301	broad.mit.edu	37	chr1	103354560	103354560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttcaatattttcataacAgcatacactgtaaaatttag	3	7	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103354560	T	T	103354560	1	4	185	0	1	0	0	0	0	0	0	0	3699	203	7	5		5	COL11A1	1	103354560	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	17936369	103354560	145896061	23	148153											
COL11A1	1301	broad.mit.edu	37	chr1	103471410	103471410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccctgtgacctttgtcaCctggcagacccggaagtcca	9	14	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103471410	A	A	103471410	3	1	185	1	0	0	0	0	1	0	0	0	3699	507	18	3	3791	3	COL11A1	1	103471410	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	116850	103471410	145779211	24	148154											
VAV3	10451	broad.mit.edu	37	chr1	108315358	108315358	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaagtaaaagtcctacgGgctgatgtgcttcctctgcc	9	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108315358	T	T	108315358	3	4	185	1	0	0	0	0	1	0	0	0	17260	1246	43	2	2106	2	VAV3	1	108315358	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	4843948	108315358	140935263	25	148155											
EPS8L3	79574	broad.mit.edu	37	chr1	110293498	110293498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagacagggctctttgGgctcggaggttggggttaca	18	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110293498	T	T	110293498	1	4	185	0	1	0	0	0	0	0	0	0	5239	1247	43	2		2	EPS8L3	1	110293498	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1978140	110293498	138957123	26	148156											
NBPF7	343505	broad.mit.edu	37	chr1	120381810	120381810	+	Silent	SNP	G	A	A													aggaaaatagaggttacccaGaagaatgtttagagcatcct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120381810	A	A	120381810	2	1	185	1	0	0	0	0	0	0	0	1	10293	933	33	4		4	NBPF7	1	120381810	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	10088312	120381810	128868811	27	148157	632	2									
NBPF7	343505	broad.mit.edu	37	chr1	120381813	120381813	+	Missense_Mutation	SNP	G	A	A													aaaatagaggttacccagaaGaatgtttagagcatcctgcc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120381813	A	A	120381813	3	1	185	1	0	0	0	0	1	0	0	0	10293	942	33	4	448	4	NBPF7	1	120381813	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3	120381813	128868808	28	148158	632	2									
ACP6	51205	broad.mit.edu	37	chr1	147121847	147121847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctaccttcggtcactgaCagcctggttcttgcctcact	7	15	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147121847	A	A	147121847	1	1	185	0	1	0	0	0	0	0	0	0	165	493	17	3		3	ACP6	1	147121847	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	26740034	147121847	102128774	29	148159											
RPRD2	23248	broad.mit.edu	37	chr1	150414319	150414319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacagacagaacagcttcCcataatgccagattgcaaaa	8	10	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150414319	A	A	150414319	1	1	185	0	1	0	0	0	0	0	0	0	13728	638	22	2		2	RPRD2	1	150414319	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	3292472	150414319	98836302	30	148160											
PIP5K1A	8394	broad.mit.edu	37	chr1	151171540	151171540	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttgatcccgcggtcccttCctgtaccttgtcctcaggta	8	15	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151171540	T	T	151171540	3	4	185	1	0	0	0	0	1	0	0	0	12034	855	30	4	70	4	PIP5K1A	1	151171540	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	757221	151171540	98079081	31	148161											
SELENBP1	8991	broad.mit.edu	37	chr1	151341801	151341801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccttgtcccaggttgagCgtgcacaagcatccccaggg	11	15	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151341801	A	A	151341801	1	1	185	0	1	0	0	0	0	0	0	0	14127	783	27	3		3	SELENBP1	1	151341801	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	170261	151341801	97908820	32	148162											
FLG	2312	broad.mit.edu	37	chr1	152285860	152285860	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgaatgcctggagctgtctCgtgcctgctcgtggtgcgat	14	11	1	1	rs145828067		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152285860	T	T	152285860	3	4	185	1	0	0	0	0	1	0	0	0	5979	884	31	4	10687	4	FLG	1	152285860	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	944059	152285860	96964761	33	148163											
FLG2	388698	broad.mit.edu	37	chr1	152329021	152329021	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acccatattgatcacatttgGaaaattcatttgaactagaa	5	7	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152329021	A	A	152329021	3	1	185	1	0	0	0	0	1	0	0	0	5980	1174	41	4	5938	4	FLG2	1	152329021	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	43161	152329021	96921600	34	148164											
LCE2C	353140	broad.mit.edu	37	chr1	152648744	152648744	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtctcttccaccggcgcCggcaccagagccccgactgc	10	21	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152648744	A	A	152648744	2	1	185	1	0	0	0	0	0	0	0	1	8739	643	23	1		1	LCE2C	1	152648744	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	319723	152648744	96601877	35	148165											
ILF2	3608	broad.mit.edu	37	chr1	153640105	153640105	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcattgtcccctttttatagGatcccacctgtcgaacttct	5	13	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153640105	A	A	153640105	3	1	185	1	0	0	0	0	1	0	0	0	7781	1174	41	4	888	4	ILF2	1	153640105	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	991361	153640105	95610516	36	148166											
RPS27	6232	broad.mit.edu	37	chr1	153963171	153963171	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagacgttccaaacatggtGgcacaagatccttgcgtcat	9	10	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153963171	A	A	153963171	1	1	185	0	1	0	0	0	0	0	0	0	13749	1363	47	4		4	RPS27	1	153963171	5'Flank	SNP	G	TCGA-64-1678-01A-01W-0928-08	323066	153963171	95287450	37	148167											
NUP210L	91181	broad.mit.edu	37	chr1	153995572	153995572	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagatttctaccatagtgtCaataccattcctttgacttc	4	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153995572	T	T	153995572	1	4	185	0	1	0	0	0	0	0	0	0	10856	841	29	4		4	NUP210L	1	153995572	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	32401	153995572	95255049	38	148168											
INSRR	3645	broad.mit.edu	37	chr1	156812834	156812834	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctttcatgacagaagcttCcttgaggaactcaatgcatt	9	9	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156812834	A	A	156812834	4	1	185	1	0	0	0	0	0	1	0	0	7844	864	30	3	828	3	INSRR	1	156812834	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2817262	156812834	92437787	39	148169											
PEAR1	375033	broad.mit.edu	37	chr1	156879773	156879773	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcccccagctgactggcctAcctgctccccactccttctc	6	21	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156879773	T	T	156879773	1	4	185	0	1	0	0	0	0	0	0	0	11806	406	14	5		5	PEAR1	1	156879773	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	66939	156879773	92370848	40	148170											
FCRL5	83416	broad.mit.edu	37	chr1	157516811	157516811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactctccagattcctgaaCctcaaggatattgtctgggg	10	10	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157516811	A	A	157516811	3	1	185	1	0	0	0	0	1	0	0	0	5855	507	18	3	2764	3	FCRL5	1	157516811	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	637038	157516811	91733810	41	148171											
FCRL1	115350	broad.mit.edu	37	chr1	157771596	157771596	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagcacctcacacagagGccccaccatgggtagcaaac	9	15	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157771596	T	T	157771596	1	4	185	0	1	0	0	0	0	0	0	0	5851	1218	42	3		3	FCRL1	1	157771596	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	254785	157771596	91479025	42	148172											
CD1D	912	broad.mit.edu	37	chr1	158146919	158146919	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaggccttcagggccagtAagtgaaccaccctgtccctg	11	13	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158146919	T	T	158146919	1	4	185	0	1	0	0	0	0	0	0	0	3007	377	13	5		5	CD1D	1	158146919	5'Flank	SNP	A	TCGA-64-1678-01A-01W-0928-08	375323	158146919	91103702	43	148173											
CD1B	910	broad.mit.edu	37	chr1	158301087	158301087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaattgcacctaggaaaGccctgcttgctttttaaaat	7	10	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158301087	T	T	158301087	1	4	185	0	1	0	0	0	0	0	0	0	3005	986	34	3		3	CD1B	1	158301087	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	154168	158301087	90949534	44	148174											
OR6N1	128372	broad.mit.edu	37	chr1	158736093	158736093	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtagtggaggggccggCagatggctaaatacctatcg	16	7	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158736093	T	T	158736093	3	4	185	1	0	0	0	0	1	0	0	0	11300	710	25	4	561	4	OR6N1	1	158736093	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	435006	158736093	90514528	45	148175											
IFI16	3428	broad.mit.edu	37	chr1	159021844	159021844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcaatcagctttgctcaCaaactaaaggaagttttgtg	7	7	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159021844	A	A	159021844	3	1	185	1	0	0	0	0	1	0	0	0	7581	479	17	3	1903	3	IFI16	1	159021844	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	285751	159021844	90228777	46	148176											
CADM3	57863	broad.mit.edu	37	chr1	159163301	159163301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtcagtcttctgggagCaagcctgcagcccggctcac	11	14	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159163301	A	A	159163301	3	1	185	1	0	0	0	0	1	0	0	0	2594	709	25	3	591	3	CADM3	1	159163301	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	141457	159163301	90087320	47	148177											
ATP1A2	477	broad.mit.edu	37	chr1	160099236	160099236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagagagggatataaatGggtgagggtggacaaagcca	17	3	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160099236	T	T	160099236	1	4	185	0	1	0	0	0	0	0	0	0	1133	1363	47	2		2	ATP1A2	1	160099236	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	935935	160099236	89151385	48	148178											
ATP1A2	477	broad.mit.edu	37	chr1	160100252	160100252	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctggaaagtttcctcgGggcttcaaattcgacacgga	10	11	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160100252	T	T	160100252	2	4	185	1	0	0	0	0	0	0	0	1	1133	1219	43	2		2	ATP1A2	1	160100252	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1016	160100252	89150369	49	148179											
F11R	50848	broad.mit.edu	37	chr1	160971012	160971012	+	Intron	SNP	C	T	T													caggctgggctgggtgctctCtagatccccaggcggccggc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160971012	T	T	160971012	1	4	185	0	1	0	0	0	0	0	0	0	5381	928	32	4		4	F11R	1	160971012	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	870760	160971012	88279609	50	148180	633	2									
F11R	50848	broad.mit.edu	37	chr1	160971020	160971020	+	Intron	SNP	C	T	T													gctgggtgctctctagatccCcaggcggccggcaactgctc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160971020	T	T	160971020	1	4	185	0	1	0	0	0	0	0	0	0	5381	638	22	4		4	F11R	1	160971020	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	8	160971020	88279601	51	148181	633	2									
OLFML2B	25903	broad.mit.edu	37	chr1	161969779	161969779	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctggataacagggccaCagcagtaattggaatgctgt	12	8	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161969779	A	A	161969779	1	1	185	0	1	0	0	0	0	0	0	0	10953	493	17	3		3	OLFML2B	1	161969779	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	998759	161969779	87280842	52	148182											
RGS4	5999	broad.mit.edu	37	chr1	163042540	163042540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggatcttagatttcttgcCccaatttttttaccatggca	6	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163042540	A	A	163042540	1	1	185	0	1	0	0	0	0	0	0	0	13416	638	22	2		2	RGS4	1	163042540	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1072761	163042540	86208081	53	148183											
XCL2	6846	broad.mit.edu	37	chr1	168510352	168510352	+	Frame_Shift_Del	DEL	A	-	-													acttttaggccacgtttggtAataaaactgtaacgcaagga							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	168510352	-	-	168510352	7	5	185	1	0	1	0	1	0	0	0	0	17551	358	13	0	165	0	XCL2	1	168510352	Frame_Shift_Del	DEL	A	TCGA-64-1678-01A-01W-0928-08	5467812	168510352	80740269	54	148184											
XCL1	6375	broad.mit.edu	37	chr1	168550290	168550290	+	Frame_Shift_Del	DEL	T	-	-													gtcttttccttgcgttacagTtttattaccaaacgtggcct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	168550290	-	-	168550290	7	5	185	1	0	1	0	1	0	0	0	0	17550	1739	60	0	187	0	XCL1	1	168550290	Frame_Shift_Del	DEL	T	TCGA-64-1678-01A-01W-0928-08	39938	168550290	80700331	55	148185											
F5	2153	broad.mit.edu	37	chr1	169513566	169513566	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgtgaccgtcacagattctCcacgcatggggaagagggtc	13	10	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169513566	T	T	169513566	3	4	185	1	0	0	0	0	1	0	0	0	5391	855	30	4	4787	4	F5	1	169513566	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	963276	169513566	79737055	56	148186											
C1orf156	92342	broad.mit.edu	37	chr1	169762027	169762027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagcttacaaaactcagaCcactcaccagaaaaaaatcg	4	12	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169762027	A	A	169762027	3	1	185	1	0	0	0	0	1	0	0	0	2026	508	18	3	312	3	C1orf156	1	169762027	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	248461	169762027	79488594	57	148187											
C1orf105	92346	broad.mit.edu	37	chr1	172425689	172425689	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtgcagcactgcccttcCcagccaagccctgtggggag	14	14	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172425689	G	G	172425689	1	3	185	0	1	0	0	0	0	0	0	0	1999	638	22	4		4	C1orf105	1	172425689	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2663662	172425689	76824932	58	148188											
MRPS14	63931	broad.mit.edu	37	chr1	174987489	174987489	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagtcacaacaaacagtatCaaaagtgatctgatgttgag	8	7	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174987489	T	T	174987489	1	4	185	0	1	0	0	0	0	0	0	0	9918	841	29	4		4	MRPS14	1	174987489	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2561800	174987489	74263132	59	148189											
TNN	63923	broad.mit.edu	37	chr1	175086125	175086125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgggtgacagagaatatgGccactgtctcctgggacccg	13	12	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175086125	T	T	175086125	3	4	185	1	0	0	0	0	1	0	0	0	16446	1203	42	3	2204	3	TNN	1	175086125	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	98636	175086125	74164496	60	148190											
TNR	7143	broad.mit.edu	37	chr1	175335314	175335314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctattttacatgtgttccCctggagggcagtatttattg	10	8	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175335314	A	A	175335314	1	1	185	0	1	0	0	0	0	0	0	0	16461	638	22	2		2	TNR	1	175335314	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	249189	175335314	73915307	61	148191											
ASTN1	460	broad.mit.edu	37	chr1	176927478	176927478	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcagtcctgaagccagactCacctgacctccacagcatcc	6	18	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176927478	A	A	176927478	1	1	185	0	1	0	0	0	0	0	0	0	1068	841	29	3		3	ASTN1	1	176927478	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1592164	176927478	72323143	62	148192											
SEC16B	89866	broad.mit.edu	37	chr1	177901902	177901902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggtgtcagtgagaggcCcaggccagcctggtggggag	20	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177901902	A	A	177901902	3	1	185	1	0	0	0	0	1	0	0	0	14100	623	22	2	335	2	SEC16B	1	177901902	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	974424	177901902	71348719	63	148193											
ABL2	27	broad.mit.edu	37	chr1	179076967	179076967	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctgtagctcctgcaggctGagttccagtttgctcacagc	10	13	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179076967	A	A	179076967	2	1	185	1	0	0	0	0	0	0	0	1	93	1277	45	4		4	ABL2	1	179076967	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1175065	179076967	70173654	64	148194											
ABL2	27	broad.mit.edu	37	chr1	179079508	179079508	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtttcttcagtgtccgagtCttggaaggaagtataggtag	13	5	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179079508	A	A	179079508	3	1	185	1	0	0	0	0	1	0	0	0	93	912	32	3	1822	3	ABL2	1	179079508	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2541	179079508	70171113	65	148195											
C1orf125	126859	broad.mit.edu	37	chr1	179452361	179452361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacttcagcaccacgtatGtacttgtaagggtttttgac	9	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179452361	T	T	179452361	1	4	185	0	1	0	0	0	0	0	0	0	2013	1392	48	3		3	C1orf125	1	179452361	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	372853	179452361	69798260	66	148196											
CACNA1E	777	broad.mit.edu	37	chr1	181684527	181684527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaacatccgccttagaaGgtaaggaaatgttctgatgc	11	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181684527	T	T	181684527	3	4	185	1	0	0	0	0	1	0	0	0	2568	1014	35	2	1259	2	CACNA1E	1	181684527	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2232166	181684527	67566094	67	148197											
CACNA1E	777	broad.mit.edu	37	chr1	181700229	181700229	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaggactccctgtctccCtctggaaatctgctggtggc	11	13	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181700229	T	T	181700229	1	4	185	0	1	0	0	0	0	0	0	0	2568	696	24	4		4	CACNA1E	1	181700229	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	15702	181700229	67550392	68	148198											
C1orf14	81626	broad.mit.edu	37	chr1	182873578	182873578	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccaactcctgattcataggGataaaaatacattaaatcag	5	8	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182873578	C	C	182873578	1	2	185	0	1	0	0	0	0	0	0	0	2020	1189	41	4		4	C1orf14	1	182873578	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1173349	182873578	66377043	69	148199											
GLT25D2	23127	broad.mit.edu	37	chr1	183942626	183942626	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcctaaaaaatgcttgctCtgggaacacaatgacacgca	7	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183942626	A	A	183942626	1	1	185	0	1	0	0	0	0	0	0	0	6531	928	32	3		3	GLT25D2	1	183942626	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1069048	183942626	65307995	70	148200											
HMCN1	83872	broad.mit.edu	37	chr1	185987598	185987598	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcctgagttgtggaaggtAgtgtaaaggatgtgaatttc	13	3	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185987598	T	T	185987598	1	4	185	0	1	0	0	0	0	0	0	0	7287	435	15	5		5	HMCN1	1	185987598	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	2044972	185987598	63263023	71	148201											
HMCN1	83872	broad.mit.edu	37	chr1	186034405	186034405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattacatggcacaaagatGggcagcccctccaagaagat	9	10	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186034405	T	T	186034405	3	4	185	1	0	0	0	0	1	0	0	0	7287	1348	47	2	7743	2	HMCN1	1	186034405	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	46807	186034405	63216216	72	148202											
GLRX2	51022	broad.mit.edu	37	chr1	193066850	193066850	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtacagtaagaacaggatGtttttgagaaaatcaccaca	8	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193066850	T	T	193066850	3	4	185	1	0	0	0	0	1	0	0	0	6524	1377	48	3	278	3	GLRX2	1	193066850	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7032445	193066850	56183771	73	148203											
CACNA1S	779	broad.mit.edu	37	chr1	201054194	201054194	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagagtcagccagccttcGgggcccctctgggctggaca	14	13	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201054194	C	C	201054194	1	2	185	0	1	0	0	0	0	0	0	0	2573	1131	39	4		4	CACNA1S	1	201054194	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	7987344	201054194	48196427	74	148204											
PPFIA4	8497	broad.mit.edu	37	chr1	203028292	203028292	+	Intron	SNP	C	T	T													gggctggctgacacacacatCtctttccttgtagttctgct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203028292	T	T	203028292	1	4	185	0	1	0	0	0	0	0	0	0	12408	928	32	4		4	PPFIA4	1	203028292	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1974098	203028292	46222329	75	148205	634	2									
PPFIA4	8497	broad.mit.edu	37	chr1	203028294	203028294	+	Intron	SNP	C	T	T													gctggctgacacacacatctCtttccttgtagttctgctaa							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203028294	T	T	203028294	1	4	185	0	1	0	0	0	0	0	0	0	12408	928	32	4		4	PPFIA4	1	203028294	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2	203028294	46222327	76	148206	634	2									
PIK3C2B	5287	broad.mit.edu	37	chr1	204394057	204394057	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtccagctctcgcaggcGgatgttcacctcaccgagga	12	14	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204394057	A	A	204394057	3	1	185	1	0	0	0	0	1	0	0	0	12005	1116	39	4	80	4	PIK3C2B	1	204394057	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1365763	204394057	44856564	77	148207											
NFASC	23114	broad.mit.edu	37	chr1	204915424	204915424	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgcatgtgcctcatcgCacatggttctggcagctaac	11	12	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204915424	T	T	204915424	1	4	185	0	1	0	0	0	0	0	0	0	10454	725	25	4		4	NFASC	1	204915424	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	521367	204915424	44335197	78	148208											
DSTYK	25778	broad.mit.edu	37	chr1	205117251	205117251	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggagtggccagatgggatGacaggagacccggtgacatt	16	7	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205117251	A	A	205117251	1	1	185	0	1	0	0	0	0	0	0	0	4825	1305	45	4		4	DSTYK	1	205117251	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	201827	205117251	44133370	79	148209											
TATDN3	128387	broad.mit.edu	37	chr1	212981036	212981036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatttaatttgattgatgGgacataaaatggaatactgc	9	3	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212981036	T	T	212981036	1	4	185	0	1	0	0	0	0	0	0	0	15712	1247	43	2		2	TATDN3	1	212981036	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	7863785	212981036	36269585	80	148210											
PROX1	5629	broad.mit.edu	37	chr1	214170382	214170382	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagagcaaagcgcgcccgGgttgagaatataattcgggg	15	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214170382	C	C	214170382	2	2	185	1	0	0	0	0	0	0	0	1	12666	1219	43	4		4	PROX1	1	214170382	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1189346	214170382	35080239	81	148211											
KCNK2	3776	broad.mit.edu	37	chr1	215345403	215345403	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatatttatactatttggcTgtgtactctttgtggctctg	8	7	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215345403	G	G	215345403	3	3	185	1	0	0	0	0	1	0	0	0	8136	1580	55	5	761	5	KCNK2	1	215345403	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	1175021	215345403	33905218	82	148212											
KCTD3	51133	broad.mit.edu	37	chr1	215792515	215792515	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtaggtggtccaaccgaaGaagagctactcaaattactc	9	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215792515	T	T	215792515	4	4	185	1	0	0	0	0	0	1	0	0	8180	943	33	3	1834	3	KCTD3	1	215792515	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	447112	215792515	33458106	83	148213											
USH2A	7399	broad.mit.edu	37	chr1	215812453	215812453	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatatgtgtgtttcttgagGaagatgaataggtgctacgc	12	5	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215812453	T	T	215812453	1	4	185	0	1	0	0	0	0	0	0	0	17162	1189	41	3		3	USH2A	1	215812453	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	19938	215812453	33438168	84	148214											
ESRRG	2104	broad.mit.edu	37	chr1	216896519	216896519	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaatcagtgtgtaaagataTagtctgtccgcccccacccc	8	13	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216896519	A	A	216896519	1	1	185	0	1	0	0	0	0	0	0	0	5304	1421	49	5		5	ESRRG	1	216896519	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1084066	216896519	32354102	85	148215											
DISP1	84976	broad.mit.edu	37	chr1	223177391	223177391	+	Silent	SNP	G	A	A													agcttcccctacaagcaagaGatttttgaactgtgcatcaa					rs138904556	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223177391	A	A	223177391	2	1	185	1	0	0	0	0	0	0	0	1	4579	933	33	4		4	DISP1	1	223177391	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	6280872	223177391	26073230	86	148216	635	2									
DISP1	84976	broad.mit.edu	37	chr1	223177398	223177398	+	Missense_Mutation	SNP	G	A	A													cctacaagcaagagatttttGaactgtgcatcaagagagct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223177398	A	A	223177398	3	1	185	1	0	0	0	0	1	0	0	0	4579	1291	45	4	2685	4	DISP1	1	223177398	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7	223177398	26073223	87	148217	635	2									
EPHX1	2052	broad.mit.edu	37	chr1	226016460	226016460	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcctcctcacttcagtGctgggctttgccatctactg	8	13	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226016460	T	T	226016460	2	4	185	1	0	0	0	0	0	0	0	1	5221	1306	46	3		3	EPHX1	1	226016460	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	2839062	226016460	23234161	88	148218											
OBSCN	84033	broad.mit.edu	37	chr1	228482374	228482374	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgtttgtttgctctttcaCgtgtggtcctttgatggttt	10	7	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228482374	T	T	228482374	1	4	185	0	1	0	0	0	0	0	0	0	10907	551	19	4		4	OBSCN	1	228482374	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2465914	228482374	20768247	89	148219											
PGBD5	79605	broad.mit.edu	37	chr1	230503934	230503934	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagagagaaggcttggggaGatggataaaagctgaaagct	17	3	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230503934	C	C	230503934	1	2	185	0	1	0	0	0	0	0	0	0	11879	957	33	4		4	PGBD5	1	230503934	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2021560	230503934	18746687	90	148220											
GNPAT	8443	broad.mit.edu	37	chr1	231403468	231403468	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggacatgcatgcctttgtCactgaagttgcctacaaaat	9	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231403468	T	T	231403468	2	4	185	1	0	0	0	0	0	0	0	1	6605	813	29	4		4	GNPAT	1	231403468	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	899534	231403468	17847153	91	148221											
PCNXL2	80003	broad.mit.edu	37	chr1	233152644	233152644	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaacttacattccatgcctCagcccccacctccctgacct	3	19	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233152644	T	T	233152644	1	4	185	0	1	0	0	0	0	0	0	0	11686	841	29	4		4	PCNXL2	1	233152644	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1749176	233152644	16097977	92	148222											
LYST	1130	broad.mit.edu	37	chr1	235909776	235909776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcatcatttgccactgaaCgcattttcatcagaagcgat	7	11	4	2	rs147536126	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235909776	T	T	235909776	3	4	185	1	0	0	0	0	1	0	0	0	9216	536	19	4	3673	4	LYST	1	235909776	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2757132	235909776	13340845	93	148223											
ACTN2	88	broad.mit.edu	37	chr1	236882306	236882306	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaactggtgtccattggCgctgaaggtgagaggtgtgg	18	5	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236882306	T	T	236882306	2	4	185	1	0	0	0	0	0	0	0	1	205	755	27	4		4	ACTN2	1	236882306	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	972530	236882306	12368315	94	148224											
RYR2	6262	broad.mit.edu	37	chr1	237664075	237664075	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactgatgatgtcatcagTtgctgtttagatctgagtgc	11	6	3	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237664075	C	C	237664075	2	2	185	1	0	0	0	0	0	0	0	1	13880	1722	60	5		5	RYR2	1	237664075	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08	781769	237664075	11586546	95	148225											
RYR2	6262	broad.mit.edu	37	chr1	237868510	237868510	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acataagcattttccacttaTaggcaacgttctgcattagg	7	9	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237868510	C	C	237868510	1	2	185	0	1	0	0	0	0	0	0	0	13880	1421	49	5		5	RYR2	1	237868510	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	204435	237868510	11382111	96	148226											
FMN2	56776	broad.mit.edu	37	chr1	240333666	240333666	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgttttccagtgatcttggGacatgaaggtgctggaattg	13	5	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240333666	T	T	240333666	1	4	185	0	1	0	0	0	0	0	0	0	6008	1189	41	3		3	FMN2	1	240333666	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2465156	240333666	8916955	97	148227											
WDR64	128025	broad.mit.edu	37	chr1	241886562	241886562	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttgaaactctgaccacctCagaaaaccaacaatctttcc	3	13	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241886562	T	T	241886562	1	4	185	0	1	0	0	0	0	0	0	0	17442	841	29	4		4	WDR64	1	241886562	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1552896	241886562	7364059	98	148228											
WDR64	128025	broad.mit.edu	37	chr1	241886581	241886581	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagaaaaccaacaatctttCcctgtcctccttttcaggag	5	13	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241886581	T	T	241886581	1	4	185	0	1	0	0	0	0	0	0	0	17442	870	30	4		4	WDR64	1	241886581	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	19	241886581	7364040	99	148229											
NLRP3	114548	broad.mit.edu	37	chr1	247597423	247597423	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggttggggcgctgtggcctCtcgcatgagtgctgcttcga	16	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247597423	A	A	247597423	2	1	185	1	0	0	0	0	0	0	0	1	10573	900	32	3		3	NLRP3	1	247597423	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	5710842	247597423	1653198	100	148230											
OR2G2	81470	broad.mit.edu	37	chr1	247752207	247752207	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtggatcatttcatctgCgaggtccctgtgctcatcaa	9	11	5	0	rs146695930	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247752207	T	T	247752207	2	4	185	1	0	0	0	0	0	0	0	1	11092	776	27	4		4	OR2G2	1	247752207	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	154784	247752207	1498414	101	148231											
OR2M4	26245	broad.mit.edu	37	chr1	248402554	248402554	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctatgtgtccctgctTggagctgaatgtttcttgtt	9	8	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248402554	C	C	248402554	2	2	185	1	0	0	0	0	0	0	0	1	11106	1799	63	5		5	OR2M4	1	248402554	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08	650347	248402554	848067	102	148232											
SNTG2	54221	broad.mit.edu	37	chr2	1168851	1168851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcggtttgcatctgaaCggaaactccagtaccacagt	10	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1168851	A	A	1168851	3	1	185	1	0	0	0	0	1	0	0	0	14989	535	19	3	603	3	SNTG2	2	1168851	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08		1168851	242030522	103	148233											
PXDN	7837	broad.mit.edu	37	chr2	1652268	1652268	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctttgtgaagggggaggTgatcttgtgcaatgggctgg	18	4	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1652268	A	A	1652268	3	1	185	1	0	0	0	0	1	0	0	0	12955	1696	59	5	1183	5	PXDN	2	1652268	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	483417	1652268	241547105	104	148234											
PXDN	7837	broad.mit.edu	37	chr2	1684240	1684240	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgggaaacatgtgccaggcCtgccaggcttgcgacatggg	15	11	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1684240	A	A	1684240	1	1	185	0	1	0	0	0	0	0	0	0	12955	696	24	2		2	PXDN	2	1684240	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	31972	1684240	241515133	105	148235											
TTC15	51112	broad.mit.edu	37	chr2	3405596	3405596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttctgggtgaaaaagctGcagcaaagagacaagtccta	11	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3405596	T	T	3405596	3	4	185	1	0	0	0	0	1	0	0	0	16808	1319	46	3	1102	3	TTC15	2	3405596	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1721356	3405596	239793777	106	148236											
ASAP2	8853	broad.mit.edu	37	chr2	9525405	9525405	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttatctggaagatttaattCtcacgttcacgttgaatatg	7	7	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9525405	T	T	9525405	3	4	185	1	0	0	0	0	1	0	0	0	1015	913	32	4	2130	4	ASAP2	2	9525405	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	6119809	9525405	233673968	107	148237											
RRM2	6241	broad.mit.edu	37	chr2	10264825	10264825	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctcaagcttaacttTgatgtgttttgccactaggt	7	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10264825	C	C	10264825	1	2	185	0	1	0	0	0	0	0	0	0	13793	1827	63	5		5	RRM2	2	10264825	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	739420	10264825	232934548	108	148238											
APOB	338	broad.mit.edu	37	chr2	21224784	21224784	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagtaatcagagagttggtCtgaaaaatcttgcagtttat	9	4	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21224784	T	T	21224784	3	4	185	1	0	0	0	0	1	0	0	0	787	913	32	4	185	4	APOB	2	21224784	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	10959959	21224784	221974589	109	148239											
APOB	338	broad.mit.edu	37	chr2	21256097	21256097	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatggtccctgagattctcCatttggccaaggtttgaaag	10	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21256097	T	T	21256097	1	4	185	0	1	0	0	0	0	0	0	0	787	609	21	4		4	APOB	2	21256097	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	31313	21256097	221943276	110	148240											
CIB4	130106	broad.mit.edu	37	chr2	26805863	26805863	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggtggagggggaaagccAcatgccaggggctctcccac	16	12	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26805863	T	T	26805863	1	4	185	0	1	0	0	0	0	0	0	0	3454	174	6	5		5	CIB4	2	26805863	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	5549766	26805863	216393510	111	148241											
TMEM214	54867	broad.mit.edu	37	chr2	27262916	27262916	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggctgggggagacactGccgctctggggctcccacct	15	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27262916	T	T	27262916	2	4	185	1	0	0	0	0	0	0	0	1	16260	1306	46	3		3	TMEM214	2	27262916	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	457053	27262916	215936457	112	148242											
ALK	238	broad.mit.edu	37	chr2	30143102	30143102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcgcccagctccagcaCcaactgcttggcacgccgga	9	19	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30143102	A	A	30143102	3	1	185	1	0	0	0	0	1	0	0	0	525	507	18	3	4554	3	ALK	2	30143102	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2880186	30143102	213056271	113	148243											
XDH	7498	broad.mit.edu	37	chr2	31570447	31570447	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccgtgggagaggtgttggGcacagtgttagtgcttgtct	17	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31570447	C	C	31570447	3	2	185	1	0	0	0	0	1	0	0	0	17553	1203	42	4	816	4	XDH	2	31570447	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1427345	31570447	211628926	114	148244											
BIRC6	57448	broad.mit.edu	37	chr2	32661279	32661279	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taatacattttacaaaagcaGaattaataataccacagttg	4	6	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32661279	T	T	32661279	1	4	185	0	1	0	0	0	0	0	0	0	1444	957	33	3		3	BIRC6	2	32661279	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1090832	32661279	210538094	115	148245											
SULT6B1	391365	broad.mit.edu	37	chr2	37421501	37421501	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagtgctggggttacagGcatgagccaccgtgcctggc	14	12	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37421501	A	A	37421501	1	1	185	0	1	0	0	0	0	0	0	0	15502	1218	42	4		4	SULT6B1	2	37421501	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	4760222	37421501	205777872	116	148246											
THUMPD2	80745	broad.mit.edu	37	chr2	39997215	39997215	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcattcaaccaacttcCtggatcttcatttataagtc	5	10	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39997215	A	A	39997215	4	1	185	1	0	0	0	0	0	1	0	0	16006	690	24	2	1236	2	THUMPD2	2	39997215	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2575714	39997215	203202158	117	148247											
SLC8A1	6546	broad.mit.edu	37	chr2	40656621	40656621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccccctctgcttgccagctCgatacctcttgtagacatac	6	16	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656621	A	A	40656621	3	1	185	1	0	0	0	0	1	0	0	0	14820	884	31	3	2269	3	SLC8A1	2	40656621	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	659406	40656621	202542752	118	148248											
FBXO11	80204	broad.mit.edu	37	chr2	48049351	48049351	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttatagaacaaaaccatacGcttaccataaatgtcatttc	3	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48049351	A	A	48049351	1	1	185	0	1	0	0	0	0	0	0	0	5784	1102	38	4		4	FBXO11	2	48049351	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	7392730	48049351	195150022	119	148249											
FSHR	2492	broad.mit.edu	37	chr2	49190064	49190064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagaaatctctgcgaaaGtttttggtaaagatggcata	10	4	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49190064	T	T	49190064	3	4	185	1	0	0	0	0	1	0	0	0	6133	1020	36	3	195	3	FSHR	2	49190064	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1140713	49190064	194009309	120	148250											
VRK2	7444	broad.mit.edu	37	chr2	58350345	58350345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggacaatagagtttaccaGcttggatgcccacaagggag	13	8	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58350345	T	T	58350345	3	4	185	1	0	0	0	0	1	0	0	0	17347	971	34	3	679	3	VRK2	2	58350345	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	9160281	58350345	184849028	121	148251											
ETAA1	54465	broad.mit.edu	37	chr2	67630052	67630052	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattggtgaaactgctattcCttgtactcccagtgtagcaa	9	9	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67630052	T	T	67630052	3	4	185	1	0	0	0	0	1	0	0	0	5309	681	24	4	502	4	ETAA1	2	67630052	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	9279707	67630052	175569321	122	148252											
GKN1	56287	broad.mit.edu	37	chr2	69204685	69204685	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccctagctaactatgtaaGtctcaccttttcaagtttgc	6	11	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69204685	A	A	69204685	1	1	185	0	1	0	0	0	0	0	0	0	6488	1044	36	4		4	GKN1	2	69204685	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1574633	69204685	173994688	123	148253											
NFU1	27247	broad.mit.edu	37	chr2	69659083	69659084	+	Frame_Shift_Del	DEL	CT	-	-													aaaagtggtctttgtacaaaCtgatgcagaggctgtttctt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69659084	-	-	69659083	7	5	185	1	0	1	0	1	0	0	0	0	10481	564	20	0	675	0	NFU1	2	69659083	Frame_Shift_Del	DEL	CT	TCGA-64-1678-01A-01W-0928-08	454398	69659083	173540290	124	148254											
DYSF	8291	broad.mit.edu	37	chr2	71871070	71871070	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgagtcctgtttctgaaatGgtctctttctttctacccac	7	12	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71871070	C	C	71871070	1	2	185	0	1	0	0	0	0	0	0	0	4899	1363	47	4		4	DYSF	2	71871070	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2211987	71871070	171328303	125	148255											
ALMS1	7840	broad.mit.edu	37	chr2	73678333	73678333	+	Frame_Shift_Del	DEL	C	-	-													tcctggaccagctgaccagaCaactggcataccaaccataa							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73678333	-	-	73678333	7	5	185	1	0	1	0	1	0	0	0	0	535	478	17	0	4706	0	ALMS1	2	73678333	Frame_Shift_Del	DEL	C	TCGA-64-1678-01A-01W-0928-08	1807263	73678333	169521040	126	148256											
C2orf78	388960	broad.mit.edu	37	chr2	74041415	74041416	+	Intron	DEL	TG	-	-													ttgaaaaggagggtcaaatcTgtagcgagtggtgagtccgt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74041416	-	-	74041415	6	5	185	0	1	1	0	1	0	0	0	0	2217	1595	55	0		0	C2orf78	2	74041415	Intron	DEL	TG	TCGA-64-1678-01A-01W-0928-08	363082	74041415	169157958	127	148257											
HTRA2	27429	broad.mit.edu	37	chr2	74759976	74759976	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggcctggtgatgtgatttTggccattggggagcagatgg	18	6	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74759976	A	A	74759976	4	1	185	1	0	0	0	0	0	1	0	0	7524	1821	63	5	1271	5	HTRA2	2	74759976	Nonsense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	718561	74759976	168439397	128	148258											
REG3A	5068	broad.mit.edu	37	chr2	79385915	79385915	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggtggaagaagagggGggagggtaaaatgaagagtg	20	2	0	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79385915	T	T	79385915	1	4	185	0	1	0	0	0	0	0	0	0	13320	1247	43	2		2	REG3A	2	79385915	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	4625939	79385915	163813458	129	148259											
CREG2	200407	broad.mit.edu	37	chr2	101967438	101967438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccttgaaatactggatgCgcctccataccatttctgaa	6	13	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101967438	A	A	101967438	3	1	185	1	0	0	0	0	1	0	0	0	3897	768	27	3	56	3	CREG2	2	101967438	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	22581523	101967438	141231935	130	148260											
RGPD4	285190	broad.mit.edu	37	chr2	108494899	108494899	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccgccagcacatacacaCagtctttagagcagctgctt	7	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108494899	T	T	108494899	1	4	185	0	1	0	0	0	0	0	0	0	13396	493	17	4		4	RGPD4	2	108494899	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	6527461	108494899	134704474	131	148261											
MARCO	8685	broad.mit.edu	37	chr2	119699850	119699850	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcatttctgctggctccagGactttggccatctataaagc	9	11	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119699850	A	A	119699850	1	1	185	0	1	0	0	0	0	0	0	0	9403	1189	41	4		4	MARCO	2	119699850	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	11204951	119699850	123499523	132	148262											
CNTNAP5	129684	broad.mit.edu	37	chr2	125262190	125262190	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatccaagtcgacaaaggttGaggtcctgacaaaaacatac	8	9	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125262190	T	T	125262190	1	4	185	0	1	0	0	0	0	0	0	0	3682	1305	45	3		3	CNTNAP5	2	125262190	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	5562340	125262190	117937183	133	148263											
ERCC3	2071	broad.mit.edu	37	chr2	128028816	128028816	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccagagtctatttagccCcagggcacatggcagctctc	9	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128028816	G	G	128028816	1	3	185	0	1	0	0	0	0	0	0	0	5256	638	22	4		4	ERCC3	2	128028816	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2766626	128028816	115170557	134	148264											
PROC	5624	broad.mit.edu	37	chr2	128186390	128186390	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctggttcctggtgggCctggtgagctggggtgaggg	21	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128186390	T	T	128186390	2	4	185	1	0	0	0	0	0	0	0	1	12651	726	26	4		4	PROC	2	128186390	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	157574	128186390	115012983	135	148265											
POTEF	728378	broad.mit.edu	37	chr2	130832708	130832708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcttctccatgtcatcCcagttggtgatgatgccgtg	10	11	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130832708	A	A	130832708	3	1	185	1	0	0	0	0	1	0	0	0	12361	624	22	2	894	2	POTEF	2	130832708	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2646318	130832708	112366665	136	148266											
NCKAP5	344148	broad.mit.edu	37	chr2	133541594	133541594	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggacctgcctggagggggCggaggggaaggggatttcac	20	8	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133541594	A	A	133541594	2	1	185	1	0	0	0	0	0	0	0	1	10318	755	27	3		3	NCKAP5	2	133541594	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	2708886	133541594	109657779	137	148267											
LRP1B	53353	broad.mit.edu	37	chr2	141115771	141115771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctccaaaattttactaaCtactatgaaaaacatgggtt	5	7	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141115771	A	A	141115771	1	1	185	0	1	0	0	0	0	0	0	0	9042	580	20	3		3	LRP1B	2	141115771	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	7574177	141115771	102083602	138	148268											
LRP1B	53353	broad.mit.edu	37	chr2	141116451	141116451	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccattgcacatttgctcCgactgtaggcatattctgtt	7	11	1	0	rs138052993	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141116451	T	T	141116451	2	4	185	1	0	0	0	0	0	0	0	1	9042	639	23	4		4	LRP1B	2	141116451	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	680	141116451	102082922	139	148269											
LRP1B	53353	broad.mit.edu	37	chr2	141143630	141143630	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatttccatgaagacatccCtcacaacgtcctcactgcca	5	15	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141143630	T	T	141143630	1	4	185	0	1	0	0	0	0	0	0	0	9042	696	24	4		4	LRP1B	2	141143630	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	27179	141143630	102055743	140	148270											
ZEB2	9839	broad.mit.edu	37	chr2	145181858	145181858	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttaaaagggctcaaggatGcagagaattacaagtaaaga	10	4	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145181858	C	C	145181858	1	2	185	0	1	0	0	0	0	0	0	0	17750	1334	46	4		4	ZEB2	2	145181858	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	4038228	145181858	98017515	141	148271											
FMNL2	114793	broad.mit.edu	37	chr2	153415439	153415439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagggcagaaactcagaaGcagatgtgctagggcttagg	16	6	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153415439	T	T	153415439	1	4	185	0	1	0	0	0	0	0	0	0	6010	986	34	3		3	FMNL2	2	153415439	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	8233581	153415439	89783934	142	148272											
PLA2R1	22925	broad.mit.edu	37	chr2	160901382	160901382	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accactgtgttgtcatgcgcCacctggacagagtactgcag	11	12	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160901382	A	A	160901382	2	1	185	1	0	0	0	0	0	0	0	1	12105	581	21	2		2	PLA2R1	2	160901382	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	7485943	160901382	82297991	143	148273											
FAP	2191	broad.mit.edu	37	chr2	163082062	163082062	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaagtactatattgttatcTgcagattgatgaagatattc	7	4	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163082062	A	A	163082062	2	1	185	1	0	0	0	0	0	0	0	1	5730	1567	55	5		5	FAP	2	163082062	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08	2180680	163082062	80117311	144	148274											
FIGN	55137	broad.mit.edu	37	chr2	164468190	164468190	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcattcgcccaggcgtacTgataggtgcgctgcagatga	12	11	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164468190	A	A	164468190	3	1	185	1	0	0	0	0	1	0	0	0	5948	1580	55	5	2131	5	FIGN	2	164468190	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	1386128	164468190	78731183	145	148275											
XIRP2	129446	broad.mit.edu	37	chr2	168101224	168101224	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccaatggagtctctttatGaaaaagtttcgttaatgacc	8	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168101224	T	T	168101224	4	4	185	1	0	0	0	0	0	1	0	0	17557	1291	45	3	3352	3	XIRP2	2	168101224	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3633034	168101224	75098149	146	148276											
C2orf77	129881	broad.mit.edu	37	chr2	170518803	170518803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttacaagaaaccgtctcCtgctttcatgcatctcttct	4	13	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170518803	A	A	170518803	3	1	185	1	0	0	0	0	1	0	0	0	2216	681	24	2	872	2	C2orf77	2	170518803	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2417579	170518803	72680570	147	148277											
HOXD11	3237	broad.mit.edu	37	chr2	176973838	176973838	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaactgaacagagaccgtCtgcagtatttcactggaaac	9	9	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176973838	A	A	176973838	3	1	185	1	0	0	0	0	1	0	0	0	7387	912	32	3	991	3	HOXD11	2	176973838	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	6455035	176973838	66225535	148	148278											
FAM171B	165215	broad.mit.edu	37	chr2	187625877	187625877	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattccaaggacataactgcCtaccacacagtgtttcttac	6	12	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187625877	A	A	187625877	2	1	185	1	0	0	0	0	0	0	0	1	5536	668	24	2		2	FAM171B	2	187625877	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	10652039	187625877	55573496	149	148279											
ZSWIM2	151112	broad.mit.edu	37	chr2	187694418	187694418	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttgtgaaaactgaccctAcagggaaagtaaaactaaaa	7	7	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187694418	T	T	187694418	1	4	185	0	1	0	0	0	0	0	0	0	18370	406	14	5		5	ZSWIM2	2	187694418	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	68541	187694418	55504955	150	148280											
COL3A1	1281	broad.mit.edu	37	chr2	189872577	189872577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccagtgctttttaaggCcttcactcctatgtacactt	5	12	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189872577	A	A	189872577	1	1	185	0	1	0	0	0	0	0	0	0	3720	754	26	3		3	COL3A1	2	189872577	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2178159	189872577	53326796	151	148281											
SLC40A1	30061	broad.mit.edu	37	chr2	190444532	190444532	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgtaagactatgcattctCacttacccaagtagagagag	9	8	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190444532	T	T	190444532	1	4	185	0	1	0	0	0	0	0	0	0	14742	841	29	4		4	SLC40A1	2	190444532	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	571955	190444532	52754841	152	148282											
STK17B	9262	broad.mit.edu	37	chr2	197008460	197008460	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaatatacaaaaaagcataCtagtctcagatggaaagtat	7	5	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197008460	T	T	197008460	1	4	185	0	1	0	0	0	0	0	0	0	15409	580	20	4		4	STK17B	2	197008460	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	6563928	197008460	46190913	153	148283											
HECW2	57520	broad.mit.edu	37	chr2	197172028	197172028	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaactgctccccaagagtCtagaacttttcactatcttc	4	14	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197172028	G	G	197172028	1	3	185	0	1	0	0	0	0	0	0	0	7110	928	32	4		4	HECW2	2	197172028	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	163568	197172028	46027345	154	148284											
ANKRD44	91526	broad.mit.edu	37	chr2	197873555	197873555	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtattggtcctggtccaaaTatattcctccaatttctcgg	7	10	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197873555	C	C	197873555	1	2	185	0	1	0	0	0	0	0	0	0	672	1421	49	5		5	ANKRD44	2	197873555	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	701527	197873555	45325818	155	148285											
SATB2	23314	broad.mit.edu	37	chr2	200246413	200246413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagatgttcagaaacacCcacctttgtaattggatttt	7	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200246413	A	A	200246413	1	1	185	0	1	0	0	0	0	0	0	0	13966	638	22	2		2	SATB2	2	200246413	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2372858	200246413	42952960	156	148286											
PTH2R	5746	broad.mit.edu	37	chr2	209302298	209302298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgggatggactcatttGttggcccagaggaacagtgg	15	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209302298	T	T	209302298	3	4	185	1	0	0	0	0	1	0	0	0	12866	1377	48	3	225	3	PTH2R	2	209302298	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	9055885	209302298	33897075	157	148287											
TNP1	7141	broad.mit.edu	37	chr2	217724297	217724297	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctcctctctggctttgatCtaacatcaggtctccttggc	9	13	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217724297	T	T	217724297	1	4	185	0	1	0	0	0	0	0	0	0	16456	928	32	4		4	TNP1	2	217724297	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	8421999	217724297	25475076	158	148288											
DNAJB2	3300	broad.mit.edu	37	chr2	220150679	220150679	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttgccgctgacgctctctCctgtcaccccgcccctgctc	8	21	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220150679	T	T	220150679	1	4	185	0	1	0	0	0	0	0	0	0	4660	870	30	4		4	DNAJB2	2	220150679	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	2426382	220150679	23048694	159	148289											
SPHKAP	80309	broad.mit.edu	37	chr2	228884540	228884540	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccatcatggagaaataagCatcttttggaatatacagtg	8	6	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228884540	G	G	228884540	3	3	185	1	0	0	0	0	1	0	0	0	15166	710	25	4	4096	4	SPHKAP	2	228884540	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	8733861	228884540	14314833	160	148290											
DGKD	8527	broad.mit.edu	37	chr2	234371403	234371403	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagctggtgccccagggacAgcagggctcgggctgtgtgt	17	10	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234371403	T	T	234371403	1	4	185	0	1	0	0	0	0	0	0	0	4507	203	7	5		5	DGKD	2	234371403	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	5486863	234371403	8827970	161	148291											
USP40	55230	broad.mit.edu	37	chr2	234459967	234459967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgaaaatcgggtcaataaTagattcaatcttgagagggg	11	5	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234459967	C	C	234459967	1	2	185	0	1	0	0	0	0	0	0	0	17199	1421	49	5		5	USP40	2	234459967	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	88564	234459967	8739406	162	148292											
LRRFIP1	9208	broad.mit.edu	37	chr2	238656997	238656997	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttaatattttgtctgtttTcgtctacaggtagaagagag	9	4	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238656997	C	C	238656997	1	2	185	0	1	0	0	0	0	0	0	0	9114	1798	62	5		5	LRRFIP1	2	238656997	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	4197030	238656997	4542376	163	148293											
PER2	8864	broad.mit.edu	37	chr2	239157728	239157729	+	Missense_Mutation	DNP	CC	AA	AA													cgtcgatggctgcgggcaggCcgcccgtctgcatccactgg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	239157729	AA	AA	239157728	3	1	185	1	0	0	0	0	1	0	0	0	11824	739	26	3	182	3	PER2	2	239157728	Missense_Mutation	DNP	CC	TCGA-64-1678-01A-01W-0928-08	500731	239157728	4041645	164	148294											
CHL1	10752	broad.mit.edu	37	chr3	403585	403585	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgacaggctgtattgtgtCtatattgttacatgtaccca	8	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	403585	A	A	403585	1	1	185	0	1	0	0	0	0	0	0	0	3380	928	32	3		3	CHL1	3	403585	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08		403585	197618845	165	148295											
CHL1	10752	broad.mit.edu	37	chr3	433422	433422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacactgccactttatcttgGggactacctaagaaattaaa	7	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	433422	T	T	433422	3	4	185	1	0	0	0	0	1	0	0	0	3380	1241	43	2	2938	2	CHL1	3	433422	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	29837	433422	197589008	166	148296											
ATP2B2	491	broad.mit.edu	37	chr3	10428274	10428274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgcgcacgcgcacacacaCaaacacacatgtgcatacac	6	16	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10428274	A	A	10428274	1	1	185	0	1	0	0	0	0	0	0	0	1144	493	17	3		3	ATP2B2	3	10428274	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	9994852	10428274	187594156	167	148297											
ATP2B2	491	broad.mit.edu	37	chr3	10625926	10625926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggcagaggccagcttGgcaggaatggggaccaggag	20	7	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10625926	T	T	10625926	1	4	185	0	1	0	0	0	0	0	0	0	1144	1363	47	2		2	ATP2B2	3	10625926	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	197652	10625926	187396504	168	148298											
NUP210	23225	broad.mit.edu	37	chr3	13383235	13383235	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcccacatggtgtgggaaGaactcgtcttacttcaatct	9	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13383235	A	A	13383235	1	1	185	0	1	0	0	0	0	0	0	0	10855	957	33	4		4	NUP210	3	13383235	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2757309	13383235	184639195	169	148299											
C3orf20	84077	broad.mit.edu	37	chr3	14731398	14731398	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaatgcggcactttacagTatgtgacccaccgtactact	7	12	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14731398	A	A	14731398	1	1	185	0	1	0	0	0	0	0	0	0	2235	1653	57	5		5	C3orf20	3	14731398	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1348163	14731398	183291032	170	148300											
TBC1D5	9779	broad.mit.edu	37	chr3	17226519	17226519	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcatgtaaacagcttagCacaaggcctagaacaaagta	7	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17226519	T	T	17226519	1	4	185	0	1	0	0	0	0	0	0	0	15745	725	25	4		4	TBC1D5	3	17226519	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2495121	17226519	180795911	171	148301											
NGLY1	55768	broad.mit.edu	37	chr3	25791364	25791364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaaccccaatgccaggCtgcacagcgaagaaaatgag	9	13	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25791364	A	A	25791364	1	1	185	0	1	0	0	0	0	0	0	0	10493	812	28	3		3	NGLY1	3	25791364	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	8564845	25791364	172231066	172	148302											
GADL1	339896	broad.mit.edu	37	chr3	30880411	30880411	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggactccacatctagtttCtgagaataagaaaaatttct	8	7	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30880411	A	A	30880411	1	1	185	0	1	0	0	0	0	0	0	0	6245	928	32	3		3	GADL1	3	30880411	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5089047	30880411	167142019	173	148303											
GLB1	2720	broad.mit.edu	37	chr3	33110298	33110298	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaccaggtagagcccagtCtagccacactcaccatttcc	6	17	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33110298	A	A	33110298	1	1	185	0	1	0	0	0	0	0	0	0	6491	928	32	3		3	GLB1	3	33110298	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2229887	33110298	164912132	174	148304											
DLEC1	9940	broad.mit.edu	37	chr3	38104226	38104226	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cactcgatatggaggcaagtCtcttgtttttcctccaaaga	8	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38104226	T	T	38104226	3	4	185	1	0	0	0	0	1	0	0	0	4592	913	32	4	1046	4	DLEC1	3	38104226	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4993928	38104226	159918204	175	148305											
SCN5A	6331	broad.mit.edu	37	chr3	38649574	38649574	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcataaatagaaaatacagtCagttgagaaaacaccaggag	9	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38649574	A	A	38649574	1	1	185	0	1	0	0	0	0	0	0	0	14035	841	29	3		3	SCN5A	3	38649574	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	545348	38649574	159372856	176	148306											
XIRP1	165904	broad.mit.edu	37	chr3	39229235	39229235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctttctgtcgttcctGctgctcccgttggtggatca	9	12	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39229235	T	T	39229235	3	4	185	1	0	0	0	0	1	0	0	0	17556	1328	46	3	3833	3	XIRP1	3	39229235	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	579661	39229235	158793195	177	148307											
ZNF35	7584	broad.mit.edu	37	chr3	44700712	44700713	+	Missense_Mutation	DNP	CC	AA	AA													ttgctcaaaatgtgggaaagCcttcactcagagttcaaatc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44700713	AA	AA	44700712	3	1	185	1	0	0	0	0	1	0	0	0	17988	739	26	3	867	3	ZNF35	3	44700712	Missense_Mutation	DNP	CC	TCGA-64-1678-01A-01W-0928-08	5471477	44700712	153321718	178	148308											
PRSS42	339906	broad.mit.edu	37	chr3	46873408	46873408	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctttatagccacagaccatCccttttattattacatcctt	2	12	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46873408	A	A	46873408	2	1	185	1	0	0	0	0	0	0	0	1	12734	842	30	3		3	PRSS42	3	46873408	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	2172696	46873408	151149022	179	148309											
KIF9	64147	broad.mit.edu	37	chr3	47281408	47281408	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtggtgtttcctgtctGgaagaagacagtaagactga	12	7	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47281408	A	A	47281408	1	1	185	0	1	0	0	0	0	0	0	0	8380	1363	47	4		4	KIF9	3	47281408	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	408000	47281408	150741022	180	148310											
KIF9	64147	broad.mit.edu	37	chr3	47286357	47286357	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggggcgactccgagtcCaaagttttgtccttcaggct	12	10	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47286357	T	T	47286357	3	4	185	1	0	0	0	0	1	0	0	0	8380	603	21	4	962	4	KIF9	3	47286357	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4949	47286357	150736073	181	148311											
ITIH1	3697	broad.mit.edu	37	chr3	52815945	52815945	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtaatggctcacactctcGacggttccagggtcatgtgc	11	12	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52815945	A	A	52815945	1	1	185	0	1	0	0	0	0	0	0	0	7973	1073	37	4		4	ITIH1	3	52815945	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	5529588	52815945	145206485	182	148312											
MAGI1	9223	broad.mit.edu	37	chr3	65425416	65425416	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggggttctcttcctccCcacaggacatcagctcttca	9	14	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65425416	A	A	65425416	1	1	185	0	1	0	0	0	0	0	0	0	9282	638	22	2		2	MAGI1	3	65425416	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	12609471	65425416	132597014	183	148313											
EPHA3	2042	broad.mit.edu	37	chr3	89456501	89456501	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attattctcctcactgttgtCatctatgttttgattgggag	8	7	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89456501	A	A	89456501	2	1	185	1	0	0	0	0	0	0	0	1	5210	813	29	3		3	EPHA3	3	89456501	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	24031085	89456501	108565929	184	148314											
CLDND1	56650	broad.mit.edu	37	chr3	98243987	98243987	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttttcactgatgaccagGgtataaagatatctgctgca	8	8	3	3	rs144252366	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98243987	A	A	98243987	1	1	185	0	1	0	0	0	0	0	0	0	3525	1247	43	4		4	CLDND1	3	98243987	5'Flank	SNP	G	TCGA-64-1678-01A-01W-0928-08	8787486	98243987	99778443	185	148315											
GPR128	84873	broad.mit.edu	37	chr3	100374910	100374910	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttcagtgatattgactccGagtgtcactgtaatttgcat	9	7	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100374910	T	T	100374910	1	4	185	0	1	0	0	0	0	0	0	0	6706	1073	37	3		3	GPR128	3	100374910	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2130923	100374910	97647520	186	148316											
IMPG2	50939	broad.mit.edu	37	chr3	100949732	100949732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtccaatatttggcacCtggtaagtactaaataaatg	7	8	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100949732	A	A	100949732	1	1	185	0	1	0	0	0	0	0	0	0	7799	696	24	2		2	IMPG2	3	100949732	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	574822	100949732	97072698	187	148317											
ZBTB11	27107	broad.mit.edu	37	chr3	101378602	101378602	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttctaatgttctttaaatAgcaaaataaacgttatagct	5	5	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101378602	G	G	101378602	1	3	185	0	1	0	0	0	0	0	0	0	17650	435	15	5		5	ZBTB11	3	101378602	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	428870	101378602	96643828	188	148318											
ZPLD1	131368	broad.mit.edu	37	chr3	101833752	101833752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgaagtgcccttcctgCccttcacatagtggatttat	8	12	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101833752	A	A	101833752	1	1	185	0	1	0	0	0	0	0	0	0	18350	754	26	3		3	ZPLD1	3	101833752	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	455150	101833752	96188678	189	148319											
PLCXD2	257068	broad.mit.edu	37	chr3	111427042	111427042	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtctgggatgggctgatgGaaattgactcgtttcttaca	13	6	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111427042	T	T	111427042	4	4	185	1	0	0	0	0	0	1	0	0	12137	1175	41	3	439	3	PLCXD2	3	111427042	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	9593290	111427042	86595388	190	148320											
MUC13	56667	broad.mit.edu	37	chr3	124631832	124631832	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgatgacaatgatgaggatGctgtctctaccaacctatga	9	8	1	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124631832	C	C	124631832	1	2	185	0	1	0	0	0	0	0	0	0	10065	1334	46	4		4	MUC13	3	124631832	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	13204790	124631832	73390598	191	148321											
ACAD11	84129	broad.mit.edu	37	chr3	132295782	132295782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaatcatttccaaattcaActcacctagtattagatttg	4	8	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132295782	G	G	132295782	1	3	185	0	1	0	0	0	0	0	0	0	109	58	2	5		5	ACAD11	3	132295782	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	7663950	132295782	65726648	192	148322											
DZIP1L	199221	broad.mit.edu	37	chr3	137821252	137821252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgaagtcctccacccagccCctgcatgttgccaagctctg	8	17	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137821252	A	A	137821252	1	1	185	0	1	0	0	0	0	0	0	0	4904	638	22	2		2	DZIP1L	3	137821252	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5525470	137821252	60201178	193	148323											
ATP1B3	483	broad.mit.edu	37	chr3	141632604	141632604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctatttcattacttcaaGcatgcagtggtatgaatgat	7	7	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141632604	T	T	141632604	3	4	185	1	0	0	0	0	1	0	0	0	1138	971	34	3	471	3	ATP1B3	3	141632604	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3811352	141632604	56389826	194	148324											
ECT2	1894	broad.mit.edu	37	chr3	172525464	172525464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagtgatagttcatttcAttggaatttcattgctctga	9	5	4	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172525464	G	G	172525464	1	3	185	0	1	0	0	0	0	0	0	0	4941	232	8	5		5	ECT2	3	172525464	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	30892860	172525464	25496966	195	148325											
KCNMB3	27094	broad.mit.edu	37	chr3	178968384	178968384	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgcccccagcactgaCagcggaagaggaattgtatt	11	12	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178968384	G	G	178968384	1	3	185	0	1	0	0	0	0	0	0	0	8146	493	17	4		4	KCNMB3	3	178968384	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	6442920	178968384	19054046	196	148326											
B3GNT5	84002	broad.mit.edu	37	chr3	182988136	182988136	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgggcaaatacctattgtCcacatgccaaatttcttatg	7	9	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182988136	T	T	182988136	3	4	185	1	0	0	0	0	1	0	0	0	1265	855	30	4	552	4	B3GNT5	3	182988136	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4019752	182988136	15034294	197	148327											
FGF12	2257	broad.mit.edu	37	chr3	191861947	191861947	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaataacaaaaattacttatGacagtggacataaatttcct	4	6	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	191861947	T	T	191861947	1	4	185	0	1	0	0	0	0	0	0	0	5898	1305	45	3		3	FGF12	3	191861947	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	8873811	191861947	6160483	198	148328											
ATP13A3	79572	broad.mit.edu	37	chr3	194169249	194169250	+	Frame_Shift_Del	DEL	TC	-	-													acgagtctgaataacagttgTcccacaaaacaaagtatgtc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	194169250	-	-	194169249	7	5	185	1	0	1	0	1	0	0	0	0	1129	1667	58	0	2681	0	ATP13A3	3	194169249	Frame_Shift_Del	DEL	TC	TCGA-64-1678-01A-01W-0928-08	2307302	194169249	3853181	199	148329											
MUC4	4585	broad.mit.edu	37	chr3	195516223	195516223	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccctggtgttgacactacaGagttggccagagtaagggca	13	10	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195516223	C	C	195516223	3	2	185	1	0	0	0	0	1	0	0	0	10072	942	33	4		4	MUC4	3	195516223	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1346974	195516223	2506207	200	148330											
MXD4	10608	broad.mit.edu	37	chr4	2254171	2254171	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcttcaggaggctcagCgtggtgtggcgggtgctgtc	18	11	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2254171	A	A	2254171	2	1	185	1	0	0	0	0	0	0	0	1	10095	755	27	3		3	MXD4	4	2254171	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08		2254171	188900105	201	148331											
NOP14	8602	broad.mit.edu	37	chr4	2954074	2954074	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcctgttagagggctgCgccttcatttcaaagccaag	9	11	3	1	rs149472162	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2954074	T	T	2954074	2	4	185	1	0	0	0	0	0	0	0	1	10631	755	27	4		4	NOP14	4	2954074	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	699903	2954074	188200202	202	148332											
CLNK	116449	broad.mit.edu	37	chr4	10566369	10566369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggtgtctaacggaagggGagtgtccattgcaaccttga	13	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10566369	T	T	10566369	3	4	185	1	0	0	0	0	1	0	0	0	3579	1174	41	3	1013	3	CLNK	4	10566369	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7612295	10566369	180587907	203	148333											
HS3ST1	9957	broad.mit.edu	37	chr4	11401489	11401489	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgctgggcagagccgttTggggccacgccatcgcggac	15	13	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11401489	A	A	11401489	2	1	185	1	0	0	0	0	0	0	0	1	7430	1799	63	5		5	HS3ST1	4	11401489	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08	835120	11401489	179752787	204	148334											
LCORL	254251	broad.mit.edu	37	chr4	17964569	17964569	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtgcattagtttaaagaTaatttcatagcactaaaact	5	5	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17964569	A	A	17964569	1	1	185	0	1	0	0	0	0	0	0	0	8762	1421	49	5		5	LCORL	4	17964569	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	6563080	17964569	173189707	205	148335											
GPR125	166647	broad.mit.edu	37	chr4	22422541	22422541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgaaaatgtatttgaaaCattgcacttaaagctcagct	6	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22422541	A	A	22422541	3	1	185	1	0	0	0	0	1	0	0	0	6704	478	17	3	2220	3	GPR125	4	22422541	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4457972	22422541	168731735	206	148336											
CCKAR	886	broad.mit.edu	37	chr4	26487314	26487314	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcacatattcgcggtctGgttgttatttttggtaaaag	12	6	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26487314	T	T	26487314	3	4	185	1	0	0	0	0	1	0	0	0	2908	1357	47	2	727	2	CCKAR	4	26487314	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	4064773	26487314	164666962	207	148337											
ARAP2	116984	broad.mit.edu	37	chr4	36069945	36069945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggaagcaagatttggcaCaatttaggtttagaaagtgc	12	5	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36069945	A	A	36069945	1	1	185	0	1	0	0	0	0	0	0	0	841	493	17	3		3	ARAP2	4	36069945	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	9582631	36069945	155084331	208	148338											
PGM2	55276	broad.mit.edu	37	chr4	37841740	37841740	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctcacgataaagggatttCtcaagctattgaagaaaatc	7	8	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37841740	T	T	37841740	3	4	185	1	0	0	0	0	1	0	0	0	11893	913	32	4	600	4	PGM2	4	37841740	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1771795	37841740	153312536	209	148339											
RBM47	54502	broad.mit.edu	37	chr4	40438719	40438719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtgacggtgctggaggCagacctcagccctcggttct	13	12	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40438719	A	A	40438719	1	1	185	0	1	0	0	0	0	0	0	0	13249	725	25	3		3	RBM47	4	40438719	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2596979	40438719	150715557	210	148340											
DCUN1D4	23142	broad.mit.edu	37	chr4	52743855	52743855	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgtctggtttgggtaaaAgaatataaattatctgctac	9	4	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52743855	C	C	52743855	1	2	185	0	1	0	0	0	0	0	0	0	4349	87	3	5		5	DCUN1D4	4	52743855	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	12305136	52743855	138410421	211	148341											
PDGFRA	5156	broad.mit.edu	37	chr4	55146466	55146466	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaccctgggtaagatttcTctttctgtttttacagctat	8	9	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55146466	A	A	55146466	1	1	185	0	1	0	0	0	0	0	0	0	11755	1566	54	5		5	PDGFRA	4	55146466	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	2402611	55146466	136007810	212	148342											
PDGFRA	5156	broad.mit.edu	37	chr4	55156788	55156788	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccctgaaggagaggaccCattttcccgataatggtgca	12	10	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55156788	T	T	55156788	1	4	185	0	1	0	0	0	0	0	0	0	11755	609	21	4		4	PDGFRA	4	55156788	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	10322	55156788	135997488	213	148343											
TECRL	253017	broad.mit.edu	37	chr4	65165789	65165789	+	Intron	SNP	A	C	C													actcatagtttggattgtcaAatatatagacataattcagg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65165789	C	C	65165789	1	2	185	0	1	0	0	0	0	0	0	0	15868	29	1	5		5	TECRL	4	65165789	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	10009001	65165789	125988487	214	148344	636	2									
TECRL	253017	broad.mit.edu	37	chr4	65165794	65165794	+	Intron	SNP	A	G	G													tagtttggattgtcaaatatAtagacataattcaggcagta							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65165794	G	G	65165794	1	3	185	0	1	0	0	0	0	0	0	0	15868	464	16	5		5	TECRL	4	65165794	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	5	65165794	125988482	215	148345	636	2									
EPHA5	2044	broad.mit.edu	37	chr4	66217258	66217258	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaaggtacttcattcctGcagagatacctctcagcatg	8	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66217258	T	T	66217258	3	4	185	1	0	0	0	0	1	0	0	0	5212	1319	46	3	776	3	EPHA5	4	66217258	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1051464	66217258	124937018	216	148346											
EPHA5	2044	broad.mit.edu	37	chr4	66356125	66356125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggttacatttacagacaCatactgccgggctcctgggc	11	11	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66356125	A	A	66356125	3	1	185	1	0	0	0	0	1	0	0	0	5212	478	17	3	1797	3	EPHA5	4	66356125	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	138867	66356125	124798151	217	148347											
EPHA5	2044	broad.mit.edu	37	chr4	66439286	66439286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacctcaaagctaaaaagcCcaagaaggggaagccccgtt	9	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66439286	A	A	66439286	1	1	185	0	1	0	0	0	0	0	0	0	5212	638	22	2		2	EPHA5	4	66439286	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	83161	66439286	124714990	218	148348											
UGT2B11	10720	broad.mit.edu	37	chr4	70071185	70071185	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatatccagtatttgttcAccagagtgttacctagaagg	8	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70071185	C	C	70071185	1	2	185	0	1	0	0	0	0	0	0	0	17083	174	6	5		5	UGT2B11	4	70071185	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	3631899	70071185	121083091	219	148349											
UGT2B28	54490	broad.mit.edu	37	chr4	70152489	70152489	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatggaggaatttgtacAgagctctggtgaaaatggtg	15	3	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70152489	T	T	70152489	3	4	185	1	0	0	0	0	1	0	0	0	17086	188	7	5	900	5	UGT2B28	4	70152489	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	81304	70152489	121001787	220	148350											
CSN1S1	1446	broad.mit.edu	37	chr4	70804989	70804989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaattatgaaaacttgtacCgtgaggattacatatccctt	6	7	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70804989	A	A	70804989	1	1	185	0	1	0	0	0	0	0	0	0	3981	667	23	1		1	CSN1S1	4	70804989	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	652500	70804989	120349287	221	148351											
C4orf40	401137	broad.mit.edu	37	chr4	71024016	71024016	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atagacaggacaaatacaatCaacttcgacttctttgtttc	5	9	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71024016	G	G	71024016	1	3	185	0	1	0	0	0	0	0	0	0	2292	841	29	4		4	C4orf40	4	71024016	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	219027	71024016	120130260	222	148352											
UTP3	57050	broad.mit.edu	37	chr4	71555768	71555768	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgaagttcgtaaagaagaGcaacgttatagtggtgaatt	12	4	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71555768	A	A	71555768	2	1	185	1	0	0	0	0	0	0	0	1	17228	962	34	4		4	UTP3	4	71555768	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	531752	71555768	119598508	223	148353											
AFP	174	broad.mit.edu	37	chr4	74313324	74313324	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggtctatctccaaatcTaaacaggtttttaggagata	8	6	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74313324	A	A	74313324	3	1	185	1	0	0	0	0	1	0	0	0	363	1522	53	5	1019	5	AFP	4	74313324	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	2757556	74313324	116840952	224	148354											
EREG	2069	broad.mit.edu	37	chr4	75248539	75248539	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgtggttttatactctgcTtttacaaattacttttacat	5	6	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75248539	A	A	75248539	1	1	185	0	1	0	0	0	0	0	0	0	5262	1624	56	5		5	EREG	4	75248539	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	935215	75248539	115905737	225	148355											
C4orf26	152816	broad.mit.edu	37	chr4	76489223	76489223	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatatacattgagatttctCtaattctctcttcccatctt	2	10	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76489223	G	G	76489223	1	3	185	0	1	0	0	0	0	0	0	0	2280	928	32	4		4	C4orf26	4	76489223	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1240684	76489223	114665053	226	148356											
ANXA3	306	broad.mit.edu	37	chr4	79503474	79503474	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacaagccatttctgccCagggtttgaccaagtcatca	7	15	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79503474	T	T	79503474	1	4	185	0	1	0	0	0	0	0	0	0	719	609	21	4		4	ANXA3	4	79503474	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	3014251	79503474	111650802	227	148357											
PRKG2	5593	broad.mit.edu	37	chr4	82126159	82126159	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggttcccagagtgtccatCtgggtgcttagaatgtttag	13	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82126159	A	A	82126159	3	1	185	1	0	0	0	0	1	0	0	0	12629	913	32	3	2317	3	PRKG2	4	82126159	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2622685	82126159	109028117	228	148358											
HNRPDL	9987	broad.mit.edu	37	chr4	83349089	83349089	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctactcttacaggaaacatGaatctgccctgcataaatcg	6	11	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83349089	A	A	83349089	1	1	185	0	1	0	0	0	0	0	0	0	7343	1305	45	4		4	HNRPDL	4	83349089	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1222930	83349089	107805187	229	148359											
LIN54	132660	broad.mit.edu	37	chr4	83859512	83859512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttggaatatatatatttaCtgttgcatttaagctgatct	7	4	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83859512	A	A	83859512	1	1	185	0	1	0	0	0	0	0	0	0	8882	580	20	3		3	LIN54	4	83859512	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	510423	83859512	107294764	230	148360											
SPARCL1	8404	broad.mit.edu	37	chr4	88416205	88416205	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcttcagcccttaaactGgggattgcagtgttgtcagg	12	9	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88416205	T	T	88416205	2	4	185	1	0	0	0	0	0	0	0	1	15112	1335	47	2		2	SPARCL1	4	88416205	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	4556693	88416205	102738071	231	148361											
MMRN1	22915	broad.mit.edu	37	chr4	90874611	90874611	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacctttattgagaaacagCcagtgttttcatttatcttt	5	8	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90874611	T	T	90874611	1	4	185	0	1	0	0	0	0	0	0	0	9764	754	26	4		4	MMRN1	4	90874611	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	2458406	90874611	100279665	232	148362											
GRID2	2895	broad.mit.edu	37	chr4	94690220	94690220	+	Intron	DEL	C	-	-													actttctgtttcctagcattCcatctaaaacaagcagatct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94690220	-	-	94690220	6	5	185	0	1	1	0	1	0	0	0	0	6838	870	30	0		0	GRID2	4	94690220	Intron	DEL	C	TCGA-64-1678-01A-01W-0928-08	3815609	94690220	96464056	233	148363											
METAP1	23173	broad.mit.edu	37	chr4	99960521	99960521	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacttaccgaattttcattCcaggaatgtctgaatctgaa	6	8	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99960521	T	T	99960521	1	4	185	0	1	0	0	0	0	0	0	0	9579	870	30	4		4	METAP1	4	99960521	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5270301	99960521	91193755	234	148364											
ADH1A	124	broad.mit.edu	37	chr4	100203767	100203767	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagagcctggggtgacctgTgttttcagaaaatgcaaaaa	12	6	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100203767	C	C	100203767	1	2	185	0	1	0	0	0	0	0	0	0	307	1711	59	5		5	ADH1A	4	100203767	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	243246	100203767	90950509	235	148365											
BANK1	55024	broad.mit.edu	37	chr4	102751288	102751288	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgaattactaaatatctctCaaagcagatgggagatctca	7	7	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102751288	T	T	102751288	4	4	185	1	0	0	0	0	0	1	0	0	1314	827	29	4	400	4	BANK1	4	102751288	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2547521	102751288	88402988	236	148366											
SEC24B	10427	broad.mit.edu	37	chr4	110448546	110448546	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactagcagatgtatatgcgGgagtggatgtacaagctgcc	13	8	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110448546	T	T	110448546	4	4	185	1	0	0	0	0	0	1	0	0	14108	1233	43	2	3104	2	SEC24B	4	110448546	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7697258	110448546	80705730	237	148367											
ANK2	287	broad.mit.edu	37	chr4	114158753	114158754	+	Splice_Site	DNP	AG	TA	TA													cttccaaacaacactgcttcAgatgatggtgaataggacaa							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	114158754	TA	TA	114158753	5	4	185	1	0	0	0	0	0	0	1	0	621	202	7	5	719	5	ANK2	4	114158753	Splice_Site	DNP	AG	TCGA-64-1678-01A-01W-0928-08	3710207	114158753	76995523	238	148368											
ANK2	287	broad.mit.edu	37	chr4	114276963	114276963	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacagatacaggaactgaaTcaaaacctcagggagtcatt	9	8	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114276963	C	C	114276963	3	2	185	1	0	0	0	0	1	0	0	0	621	1435	50	5	7404	5	ANK2	4	114276963	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	118210	114276963	76877313	239	148369											
MFSD8	256471	broad.mit.edu	37	chr4	128863280	128863281	+	Missense_Mutation	DNP	CC	AA	AA													tttcctgaagggaagtagcaCcagcagtatatgatctaaca							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	128863281	AA	AA	128863280	3	1	185	1	0	0	0	0	1	0	0	0	9631	507	18	3	1115	3	MFSD8	4	128863280	Missense_Mutation	DNP	CC	TCGA-64-1678-01A-01W-0928-08	14586317	128863280	62290996	240	148370											
ELMOD2	255520	broad.mit.edu	37	chr4	141458778	141458778	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtaaagtctgcaaattcTagaggcttatatggctaggc	10	6	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141458778	C	C	141458778	1	2	185	0	1	0	0	0	0	0	0	0	5111	1537	53	5		5	ELMOD2	4	141458778	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	12595498	141458778	49695498	241	148371											
INPP4B	8821	broad.mit.edu	37	chr4	143129683	143129683	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgatttgaaagaggaccCtgatggaaaccagaaattaa	10	6	0	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143129683	A	A	143129683	5	1	185	1	0	0	0	0	0	0	1	0	7823	695	24	2	1859	2	INPP4B	4	143129683	Splice_Site	SNP	C	TCGA-64-1678-01A-01W-0928-08	1670905	143129683	48024593	242	148372											
ARHGAP10	79658	broad.mit.edu	37	chr4	148876486	148876486	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtcttccagagcctctcAtgacctatgagttacatgga	10	10	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148876486	G	G	148876486	3	3	185	1	0	0	0	0	1	0	0	0	864	217	8	5	1473	5	ARHGAP10	4	148876486	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	5746803	148876486	42277790	243	148373											
LRBA	987	broad.mit.edu	37	chr4	151223840	151223840	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacagcaaaagagttgcatCacgtgaccctgagagaatgt	10	10	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151223840	A	A	151223840	3	1	185	1	0	0	0	0	1	0	0	0	9018	826	29	3	624	3	LRBA	4	151223840	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2347354	151223840	39930436	244	148374											
DCHS2	54798	broad.mit.edu	37	chr4	155156960	155156960	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccaaggtgtcttctttgttGagttgactttttattagggg	11	5	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155156960	A	A	155156960	2	1	185	1	0	0	0	0	0	0	0	1	4321	1277	45	4		4	DCHS2	4	155156960	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	3933120	155156960	35997316	245	148375											
NPY2R	4887	broad.mit.edu	37	chr4	156135190	156135191	+	Missense_Mutation	DNP	CC	AA	AA													actcctagaggtgaactggtCcctgaccctgagccagagct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	156135191	AA	AA	156135190	3	1	185	1	0	0	0	0	1	0	0	0	10704	842	30	3	101	3	NPY2R	4	156135190	Missense_Mutation	DNP	CC	TCGA-64-1678-01A-01W-0928-08	978230	156135190	35019086	246	148376											
GUCY1A3	2982	broad.mit.edu	37	chr4	156631723	156631723	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggaggttatcaaagaatctCttggtgaagaggtttttaaa	11	3	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156631723	G	G	156631723	3	3	185	1	0	0	0	0	1	0	0	0	6959	913	32	4	420	4	GUCY1A3	4	156631723	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	496533	156631723	34522553	247	148377											
MARCH1	55016	broad.mit.edu	37	chr4	165109717	165109717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagcaaacgcatcacgcGgtcctatgtgcccttcactc	8	15	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165109717	T	T	165109717	1	4	185	0	1	0	0	0	0	0	0	0	9390	1131	39	1		1	MARCH1	4	165109717	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	8477994	165109717	26044559	248	148378											
DDX60	55601	broad.mit.edu	37	chr4	169195281	169195281	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagaaactgaaccgtatgTtaccaaaacaaagacagtat	6	8	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169195281	C	C	169195281	1	2	185	0	1	0	0	0	0	0	0	0	4411	1740	60	5		5	DDX60	4	169195281	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	4085564	169195281	21958995	249	148379											
C4orf41	60684	broad.mit.edu	37	chr4	184585241	184585241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggtaatggcattgtgatGgcatgtgttctttccttctc	10	8	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184585241	A	A	184585241	1	1	185	0	1	0	0	0	0	0	0	0	2293	1363	47	4		4	C4orf41	4	184585241	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	15389960	184585241	6569035	250	148380											
TRIML2	205860	broad.mit.edu	37	chr4	189020356	189020356	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcatttcttcgttactatTcaacaacctcaagttcagga	5	10	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189020356	A	A	189020356	1	1	185	0	1	0	0	0	0	0	0	0	16676	1798	62	5		5	TRIML2	4	189020356	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	4435115	189020356	2133920	251	148381											
TRIML2	205860	broad.mit.edu	37	chr4	189022466	189022466	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agattaacaacacacacacaCgtcataatagatagatatct	4	9	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189022466	T	T	189022466	1	4	185	0	1	0	0	0	0	0	0	0	16676	551	19	4		4	TRIML2	4	189022466	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2110	189022466	2131810	252	148382											
SLC6A18	348932	broad.mit.edu	37	chr5	1240646	1240646	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcgtgcgtttgtgcccagGaatgactgccagaaggatgc	15	9	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1240646	A	A	1240646	2	1	185	1	0	0	0	0	0	0	0	1	14795	1188	41	4		4	SLC6A18	5	1240646	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08		1240646	179674614	253	148383											
KIAA0947	23379	broad.mit.edu	37	chr5	5473809	5473809	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaatacatatttgccattGatctgctctgctgccatcag	9	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5473809	T	T	5473809	3	4	185	1	0	0	0	0	1	0	0	0	8272	1290	45	3	6423	3	KIAA0947	5	5473809	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	4233163	5473809	175441451	254	148384											
SEMA5A	9037	broad.mit.edu	37	chr5	9190417	9190417	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtggacgagcgcttctctgCcctgcaccacgtcgactgcc	11	16	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9190417	G	G	9190417	3	3	185	1	0	0	0	0	1	0	0	0	14150	739	26	4	2041	4	SEMA5A	5	9190417	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3716608	9190417	171724843	255	148385											
CTNND2	1501	broad.mit.edu	37	chr5	11098777	11098777	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagagcagtgtgaggtaGggtttgactattgatgggtg	17	3	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11098777	T	T	11098777	2	4	185	1	0	0	0	0	0	0	0	1	4054	987	35	2		2	CTNND2	5	11098777	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1908360	11098777	169816483	256	148386											
RNASEN	29102	broad.mit.edu	37	chr5	31406967	31406967	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcttctcataccttggtcCtttcccacagcctattcttt	3	15	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31406967	G	G	31406967	3	3	185	1	0	0	0	0	1	0	0	0	13528	690	24	4	196	4	RNASEN	5	31406967	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	20308190	31406967	149508293	257	148387											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576861	33576861	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggattgggaagtgaggatGggctgggaagtgcttccagt	18	4	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33576861	T	T	33576861	2	4	185	1	0	0	0	0	0	0	0	1	257	1335	47	2		2	ADAMTS12	5	33576861	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	2169894	33576861	147338399	258	148388											
SPEF2	79925	broad.mit.edu	37	chr5	35793460	35793460	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaggttgttaccagcacctGatggcattgataacaccaga	10	10	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35793460	A	A	35793460	1	1	185	0	1	0	0	0	0	0	0	0	15153	1305	45	4		4	SPEF2	5	35793460	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2216599	35793460	145121800	259	148389											
IL7R	3575	broad.mit.edu	37	chr5	35874746	35874746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccacaaaggggattaaggCatttcacgaatttagtgccc	9	9	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35874746	A	A	35874746	1	1	185	0	1	0	0	0	0	0	0	0	7775	725	25	3		3	IL7R	5	35874746	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	81286	35874746	145040514	260	148390											
IL7R	3575	broad.mit.edu	37	chr5	35876346	35876346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcagtgcatgtgacgccCctattctctcctcttccagg	8	14	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35876346	A	A	35876346	3	1	185	1	0	0	0	0	1	0	0	0	7775	623	22	2	1168	2	IL7R	5	35876346	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1600	35876346	145038914	261	148391											
CAPSL	133690	broad.mit.edu	37	chr5	35910651	35910651	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataattctaaacactctgaaGaaaatacacacaaaaattca	2	8	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35910651	T	T	35910651	1	4	185	0	1	0	0	0	0	0	0	0	2665	957	33	3		3	CAPSL	5	35910651	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	34305	35910651	145004609	262	148392											
PRKAA1	5562	broad.mit.edu	37	chr5	40767545	40767545	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggatactatcagatctgaTaacttccaaactgctttatt	5	8	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40767545	C	C	40767545	1	2	185	0	1	0	0	0	0	0	0	0	12599	1421	49	5		5	PRKAA1	5	40767545	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	4856894	40767545	140147715	263	148393											
HCN1	348980	broad.mit.edu	37	chr5	45262807	45262807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgattgcctgcaccatctccCtgtcatgtttcacaatctgc	6	15	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45262807	A	A	45262807	3	1	185	1	0	0	0	0	1	0	0	0	7062	681	24	2	787	2	HCN1	5	45262807	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4495262	45262807	135652453	264	148394											
IPO11	51194	broad.mit.edu	37	chr5	61781380	61781380	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactctattaaagattccagAcatttgctgggcatggtggc	10	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61781380	G	G	61781380	1	3	185	0	1	0	0	0	0	0	0	0	7863	290	10	5		5	IPO11	5	61781380	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	16518573	61781380	119133880	265	148395											
NLN	57486	broad.mit.edu	37	chr5	65029214	65029214	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caccaccttctactttcatgGaaacgagacctccatgaatg	6	13	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65029214	A	A	65029214	1	1	185	0	1	0	0	0	0	0	0	0	10562	1189	41	4		4	NLN	5	65029214	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3247834	65029214	115886046	266	148396											
MAP1B	4131	broad.mit.edu	37	chr5	71496325	71496325	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctttaccttccctgtActcttctcctctgcccaaag	5	15	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71496325	C	C	71496325	1	2	185	0	1	0	0	0	0	0	0	0	9320	406	14	5		5	MAP1B	5	71496325	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	6467111	71496325	109418935	267	148397											
SV2C	22987	broad.mit.edu	37	chr5	75621169	75621169	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcattttctcaaccttgttCatgtctctttcctttgcagg	7	11	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75621169	T	T	75621169	1	4	185	0	1	0	0	0	0	0	0	0	15537	841	29	4		4	SV2C	5	75621169	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4124844	75621169	105294091	268	148398											
IQGAP2	10788	broad.mit.edu	37	chr5	75970540	75970540	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatcaggaattcaggtgagAggggcccttagttttggaga	15	5	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75970540	T	T	75970540	1	4	185	0	1	0	0	0	0	0	0	0	7885	319	11	5		5	IQGAP2	5	75970540	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	349371	75970540	104944720	269	148399											
RASGRF2	5924	broad.mit.edu	37	chr5	80369227	80369228	+	Frame_Shift_Ins	INS	-	C	C													tggccgccagctccaagaagINSccccccatcagccacgacga							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80369228	C	C	80369227	7	5	185	1	0	1	1	0	0	0	0	0	13181	962	34	0	861	0	RASGRF2	5	80369227	Frame_Shift_Ins	INS	-	TCGA-64-1678-01A-01W-0928-08	4398687	80369227	100546033	270	148400	637	2									
RASGRF2	5924	broad.mit.edu	37	chr5	80369234	80369234	+	Missense_Mutation	SNP	A	G	G													ccagctccaagaagccccccAtcagccacgacgacgtcagc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80369234	G	G	80369234	3	3	185	1	0	0	0	0	1	0	0	0	13181	217	8	5	868	5	RASGRF2	5	80369234	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	7	80369234	100546026	271	148401	637	2									
PAM	5066	broad.mit.edu	37	chr5	102343170	102343170	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttctgcagagtcttcagGgagcagtcctctgccaggcc	12	12	4	1	rs148652099		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102343170	T	T	102343170	3	4	185	1	0	0	0	0	1	0	0	0	11506	1232	43	2	2098	2	PAM	5	102343170	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	21973936	102343170	78572090	272	148402											
MEGF10	84466	broad.mit.edu	37	chr5	126705572	126705572	+	Intron	SNP	T	C	C													tttttttcttgtgccaacttTctttatttgattgattttct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126705572	C	C	126705572	1	2	185	0	1	0	0	0	0	0	0	0	9553	1798	62	5		5	MEGF10	5	126705572	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	24362402	126705572	54209688	273	148403	638	2									
MEGF10	84466	broad.mit.edu	37	chr5	126705576	126705576	+	Intron	SNP	T	A	A													tttcttgtgccaactttcttTatttgattgattttctctct							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126705576	A	A	126705576	1	1	185	0	1	0	0	0	0	0	0	0	9553	1769	61	5		5	MEGF10	5	126705576	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	4	126705576	54209684	274	148404	638	2									
FBN2	2201	broad.mit.edu	37	chr5	127597560	127597560	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctctgtatccagtgacagGtactgccccttgttaaatcc	7	13	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127597560	C	C	127597560	4	2	185	1	0	0	0	0	0	1	0	0	5760	1256	44	4	514	4	FBN2	5	127597560	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	891984	127597560	53317700	275	148405											
PCDHA4	56144	broad.mit.edu	37	chr5	140188720	140188720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgccaccgcctactggtaCtggtgaaggaccacggcgag	14	14	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140188720	A	A	140188720	3	1	185	1	0	0	0	0	1	0	0	0	11620	564	20	3	1950	3	PCDHA4	5	140188720	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	12591160	140188720	40726540	276	148406											
PCDHA10	56139	broad.mit.edu	37	chr5	140237084	140237084	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcgtgggacgcggacgcgcAggagaacgccctggtgtcct	17	12	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140237084	T	T	140237084	3	4	185	1	0	0	0	0	1	0	0	0	11614	188	7	5	1453	5	PCDHA10	5	140237084	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	48364	140237084	40678176	277	148407											
PCDHB4	56131	broad.mit.edu	37	chr5	140502607	140502607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtggatgtgaatgacaatCccccagaacttatcatatct	8	9	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140502607	A	A	140502607	3	1	185	1	0	0	0	0	1	0	0	0	11638	855	30	3	1029	3	PCDHB4	5	140502607	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	265523	140502607	40412653	278	148408											
PCDHB6	56130	broad.mit.edu	37	chr5	140531538	140531538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacccgctgcagaacggctCcgcgccctgcaccgagctgg	13	17	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140531538	A	A	140531538	3	1	185	1	0	0	0	0	1	0	0	0	11640	855	30	3	1702	3	PCDHB6	5	140531538	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	28931	140531538	40383722	279	148409											
PCDHB16	57717	broad.mit.edu	37	chr5	140563163	140563163	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtggacgtgaatgacaaTcccccacaggtgaccatgtc	12	11	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140563163	C	C	140563163	2	2	185	1	0	0	0	0	0	0	0	1	11635	1432	50	5		5	PCDHB16	5	140563163	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08	31625	140563163	40352097	280	148410											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736507	140736507	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggagctggcaccccgCtccgcagattccggctacct	13	15	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140736507	T	T	140736507	2	4	185	1	0	0	0	0	0	0	0	1	11650	784	28	4		4	PCDHGA4	5	140736507	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	173344	140736507	40178753	281	148411											
ARAP3	64411	broad.mit.edu	37	chr5	141051889	141051889	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaggggtggacagccagtCcatgggcatggacctacctg	15	11	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141051889	A	A	141051889	1	1	185	0	1	0	0	0	0	0	0	0	842	870	30	3		3	ARAP3	5	141051889	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	315382	141051889	39863371	282	148412											
PCDH1	5097	broad.mit.edu	37	chr5	141244523	141244523	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagcggggtggtagtctgcAggaaatacttcttcttgctg	13	8	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141244523	C	C	141244523	3	2	185	1	0	0	0	0	1	0	0	0	11600	188	7	5	2436	5	PCDH1	5	141244523	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	192634	141244523	39670737	283	148413											
KCTD16	57528	broad.mit.edu	37	chr5	143586157	143586157	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatactgggataagaggaGgtcattttttaataagttag	10	2	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143586157	T	T	143586157	1	4	185	1	0	0	0	0	0	0	0	0	8173	1015	35	2		2	KCTD16	5	143586157	Translation_Start_Site	SNP	G	TCGA-64-1678-01A-01W-0928-08	2341634	143586157	37329103	284	148414											
PPARGC1B	133522	broad.mit.edu	37	chr5	149212100	149212100	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggggacggaatgaaggaaAcctggctgttcctatgatcc	13	9	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149212100	T	T	149212100	1	4	185	0	1	0	0	0	0	0	0	0	12397	58	2	5		5	PPARGC1B	5	149212100	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	5625943	149212100	31703160	285	148415											
PPARGC1B	133522	broad.mit.edu	37	chr5	149212135	149212135	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatccaggtgagacacaatGggccagccagtgaccatgcg	13	11	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149212135	A	A	149212135	1	1	185	0	1	0	0	0	0	0	0	0	12397	1363	47	4		4	PPARGC1B	5	149212135	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	35	149212135	31703125	286	148416											
CAMK2A	815	broad.mit.edu	37	chr5	149624787	149624787	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggagaaaaagtagagGgttaacaacgccaggcaggg	17	5	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149624787	A	A	149624787	1	1	185	0	1	0	0	0	0	0	0	0	2625	1247	43	4		4	CAMK2A	5	149624787	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	412652	149624787	31290473	287	148417											
FAT2	2196	broad.mit.edu	37	chr5	150885055	150885055	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccacactcaactcaccccCtacgagacaggaagaaataa	6	14	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150885055	T	T	150885055	1	4	185	0	1	0	0	0	0	0	0	0	5747	696	24	4		4	FAT2	5	150885055	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	1260268	150885055	30030205	288	148418											
GRIA1	2890	broad.mit.edu	37	chr5	153030061	153030061	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaatcagaacgcctcaatgCtatcttgggccaggtagtga	11	9	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153030061	G	G	153030061	3	3	185	1	0	0	0	0	1	0	0	0	6833	797	28	4	646	4	GRIA1	5	153030061	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2145006	153030061	27885199	289	148419											
GRIA1	2890	broad.mit.edu	37	chr5	153085295	153085295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccttaactatcactttGgtccgggaagaagttataga	9	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153085295	T	T	153085295	3	4	185	1	0	0	0	0	1	0	0	0	6833	1339	47	2	1533	2	GRIA1	5	153085295	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	55234	153085295	27829965	290	148420											
ITK	3702	broad.mit.edu	37	chr5	156638359	156638359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgagagccggcagcgctGggtgctggcccttaaagaag	16	10	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156638359	T	T	156638359	3	4	185	1	0	0	0	0	1	0	0	0	7979	1357	47	2	315	2	ITK	5	156638359	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3553064	156638359	24276901	291	148421											
ITK	3702	broad.mit.edu	37	chr5	156670838	156670839	+	Intron	INS	-	G	G													caaggatatgcagaaactctINSggggggaacatcggttcagt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156670839	G	G	156670838	6	5	185	0	1	1	1	0	0	0	0	0	7979	1595	55	0		0	ITK	5	156670838	Intron	INS	-	TCGA-64-1678-01A-01W-0928-08	32479	156670838	24244422	292	148422											
ATP10B	23120	broad.mit.edu	37	chr5	160076224	160076224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgggtttctcacacaCgatggtattgtggaaaagct	12	6	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160076224	T	T	160076224	3	4	185	1	0	0	0	0	1	0	0	0	1121	536	19	4	3746	4	ATP10B	5	160076224	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3405386	160076224	20839036	293	148423											
ODZ2	57451	broad.mit.edu	37	chr5	167525022	167525022	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaaacactacatttatctCtttttcagattcagtgcagg	7	8	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167525022	G	G	167525022	1	3	185	0	1	0	0	0	0	0	0	0	10930	928	32	4		4	ODZ2	5	167525022	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	7448798	167525022	13390238	294	148424											
ODZ2	57451	broad.mit.edu	37	chr5	167645863	167645863	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcatgcctgacaaccagaTcatcaccctcaccgtgggca	8	16	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167645863	A	A	167645863	3	1	185	1	0	0	0	0	1	0	0	0	10930	1435	50	5	5030	5	ODZ2	5	167645863	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	120841	167645863	13269397	295	148425											
CCDC99	54908	broad.mit.edu	37	chr5	169023609	169023609	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaagggtctcaaactgaAtttgagcagcaggaacggtt	12	6	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169023609	G	G	169023609	2	3	185	1	0	0	0	0	0	0	0	1	2904	98	4	5		5	CCDC99	5	169023609	Silent	SNP	A	TCGA-64-1678-01A-01W-0928-08	1377746	169023609	11891651	296	148426											
DOCK2	1794	broad.mit.edu	37	chr5	169135327	169135327	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttaccatgaaccaggcaCtgttttaagtgctttattta	6	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169135327	G	G	169135327	1	3	185	0	1	0	0	0	0	0	0	0	4727	580	20	4		4	DOCK2	5	169135327	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	111718	169135327	11779933	297	148427											
DOCK2	1794	broad.mit.edu	37	chr5	169141245	169141245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaagagttgtgtctgtGgggagtgtgtgtgtccgtgt	16	5	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169141245	T	T	169141245	1	4	185	0	1	0	0	0	0	0	0	0	4727	1363	47	2		2	DOCK2	5	169141245	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	5918	169141245	11774015	298	148428											
GABRP	2568	broad.mit.edu	37	chr5	170221314	170221314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaacatggtaagcgctgtTcctttgtactctacccaagt	8	10	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170221314	A	A	170221314	1	1	185	0	1	0	0	0	0	0	0	0	6234	1798	62	5		5	GABRP	5	170221314	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1080069	170221314	10693946	299	148429											
ATP6V0E1	8992	broad.mit.edu	37	chr5	172410842	172410842	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaggcgacggggtaggGgttggcgctcaggcggcgac	22	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172410842	A	A	172410842	1	1	185	0	1	0	0	0	0	0	0	0	1179	1247	43	4		4	ATP6V0E1	5	172410842	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	2189528	172410842	8504418	300	148430											
DDX41	51428	broad.mit.edu	37	chr5	176942556	176942556	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acaaggaacctaaagaaactCctcctcaaatccctccagcc	4	16	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176942556	A	A	176942556	1	1	185	0	1	0	0	0	0	0	0	0	4394	870	30	3		3	DDX41	5	176942556	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4531714	176942556	3972704	301	148431											
F13A1	2162	broad.mit.edu	37	chr6	6197479	6197479	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctattttcctggggggtgCtgtccacagcttgccagcct	12	13	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6197479	A	A	6197479	3	1	185	1	0	0	0	0	1	0	0	0	5383	797	28	3	1033	3	F13A1	6	6197479	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08		6197479	164917588	302	148432											
CAGE1	285782	broad.mit.edu	37	chr6	7355286	7355286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caacttactgtgcaatctggGagtgggatattgcaagcctt	11	8	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7355286	T	T	7355286	3	4	185	1	0	0	0	0	1	0	0	0	2598	1174	41	3	284	3	CAGE1	6	7355286	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1157807	7355286	163759781	303	148433											
RIOK1	83732	broad.mit.edu	37	chr6	7403150	7403150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgactgtctgggatgtgtGtatgtctgtcctatgccctg	14	8	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7403150	T	T	7403150	1	4	185	0	1	0	0	0	0	0	0	0	13488	1392	48	3		3	RIOK1	6	7403150	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	47864	7403150	163711917	304	148434											
TDP2	51567	broad.mit.edu	37	chr6	24666767	24666767	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacttactaggtcttgggctCagagatggtttcaggtcggc	13	9	3	1	rs143844222	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24666767	T	T	24666767	3	4	185	1	0	0	0	0	1	0	0	0	15851	835	29	4	874	4	TDP2	6	24666767	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	17263617	24666767	146448300	305	148435			1	114		3	3	379	C		5.939141e-05
TDP2	51567	broad.mit.edu	37	chr6	24667094	24667094	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caactccccaactccatcttCctgccgcctctgcaccgccc	4	23	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24667094	T	T	24667094	1	4	185	0	1	0	0	0	0	0	0	0	15851	870	30	4		4	TDP2	6	24667094	5'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	327	24667094	146447973	306	148436			1	114		3	3	379	C		5.939141e-05
TDP2	51567	broad.mit.edu	37	chr6	24667145	24667145	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaggaggccaacgcgcggCtctgcgcaggcgcctgtgtc	15	14	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24667145	T	T	24667145	1	4	185	0	1	0	0	0	0	0	0	0	15851	812	28	4		4	TDP2	6	24667145	5'Flank	SNP	C	TCGA-64-1678-01A-01W-0928-08	51	24667145	146447922	307	148437			1	114		3	3	379	C		5.939141e-05
HIST1H2AJ	8331	broad.mit.edu	37	chr6	27782248	27782248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcttgttgagctcctcatCgttgcggatggccagctgga	13	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27782248	T	T	27782248	3	4	185	1	0	0	0	0	1	0	0	0	7203	884	31	4	119	4	HIST1H2AJ	6	27782248	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3115103	27782248	143332819	308	148438											
OR5V1	81696	broad.mit.edu	37	chr6	29323407	29323407	+	Frame_Shift_Del	DEL	C	-	-													cattgacagaagtgtttccaCaagacaagatcagcaaaggg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29323407	-	-	29323407	7	5	185	1	0	1	0	1	0	0	0	0	11278	478	17	0	402	0	OR5V1	6	29323407	Frame_Shift_Del	DEL	C	TCGA-64-1678-01A-01W-0928-08	1541159	29323407	141791660	309	148439											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33052719	33052719	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcattatttttcttccacGctcctagtccagcctagggt	6	12	2	0	rs116591494	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33052719	C	C	33052719	1	2	185	0	1	0	0	0	0	0	0	0	7270	1102	38	4		4	HLA-DPB1	6	33052719	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3729312	33052719	138062348	310	148440											
PHF1	5252	broad.mit.edu	37	chr6	33383457	33383457	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccccagacaggtgagattcTgtcttctattaccagtgatg	9	11	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33383457	A	A	33383457	1	1	185	0	1	0	0	0	0	0	0	0	11915	1595	55	5		5	PHF1	6	33383457	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	330738	33383457	137731610	311	148441											
SLC26A8	116369	broad.mit.edu	37	chr6	35918953	35918953	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctgaccttgtctgtttctGagtaggtttcccgtatcact	9	10	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35918953	T	T	35918953	4	4	185	1	0	0	0	0	0	1	0	0	14637	1294	45	3	461	3	SLC26A8	6	35918953	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2535496	35918953	135196114	312	148442											
LRFN2	57497	broad.mit.edu	37	chr6	40360626	40360626	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaggttgttgaccacgaAggccttgttggaggctggga	15	9	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40360626	C	C	40360626	3	2	185	1	0	0	0	0	1	0	0	0	9025	72	3	5	947	5	LRFN2	6	40360626	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	4441673	40360626	130754441	313	148443											
LRFN2	57497	broad.mit.edu	37	chr6	40399650	40399650	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccggctggtcttgctggaGccagtgatgtctgagaggcg	16	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40399650	T	T	40399650	2	4	185	1	0	0	0	0	0	0	0	1	9025	958	34	3		3	LRFN2	6	40399650	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	39024	40399650	130715417	314	148444											
TREML2	79865	broad.mit.edu	37	chr6	41162245	41162245	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggcgatctggtgctgaGgtccccagacttagtggaga	17	8	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41162245	A	A	41162245	3	1	185	1	0	0	0	0	1	0	0	0	16597	1000	35	4	274	4	TREML2	6	41162245	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	762595	41162245	129952822	315	148445											
CNPY3	10695	broad.mit.edu	37	chr6	42902106	42902106	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttgagtgctgattttGgtcctccagtctaggaaagg	12	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42902106	C	C	42902106	1	2	185	0	1	0	0	0	0	0	0	0	3661	1363	47	4		4	CNPY3	6	42902106	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1739861	42902106	128212961	316	148446											
CUL9	23113	broad.mit.edu	37	chr6	43166498	43166498	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgccgtgaggcccctcctCaagcgcctccagcaggagac	13	16	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43166498	T	T	43166498	2	4	185	1	0	0	0	0	0	0	0	1	4094	813	29	4		4	CUL9	6	43166498	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	264392	43166498	127948569	317	148447											
ABCC10	89845	broad.mit.edu	37	chr6	43400557	43400557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggagggccttgtatggggCctttggacggtgctatctgg	18	7	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43400557	T	T	43400557	3	4	185	1	0	0	0	0	1	0	0	0	50	739	26	4	712	4	ABCC10	6	43400557	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	234059	43400557	127714510	318	148448											
ABCC10	89845	broad.mit.edu	37	chr6	43416590	43416590	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtggctacatctccaaCcactagactccatgtcattg	7	12	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43416590	A	A	43416590	1	1	185	0	1	0	0	0	0	0	0	0	50	522	18	3		3	ABCC10	6	43416590	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	16033	43416590	127698477	319	148449											
CAPN11	11131	broad.mit.edu	37	chr6	44148593	44148593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccccatattttgtgccCctcttgatcactcccagtgc	5	18	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44148593	A	A	44148593	1	1	185	0	1	0	0	0	0	0	0	0	2650	638	22	2		2	CAPN11	6	44148593	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	732003	44148593	126966474	320	148450											
TCTE1	202500	broad.mit.edu	37	chr6	44253930	44253930	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggactggtcgcccggccggAgctgggccgggagctgcacc	18	15	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44253930	T	T	44253930	3	4	185	1	0	0	0	0	1	0	0	0	15839	304	11	5	900	5	TCTE1	6	44253930	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	105337	44253930	126861137	321	148451											
GPR111	222611	broad.mit.edu	37	chr6	47646939	47646939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagtggagcctcccattgGcagtggatattgccctcagt	11	12	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47646939	T	T	47646939	1	4	185	0	1	0	0	0	0	0	0	0	6693	1218	42	3		3	GPR111	6	47646939	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3393009	47646939	123468128	322	148452											
CRISP2	7180	broad.mit.edu	37	chr6	49676823	49676823	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctggatagctctgaaaaGattttccattttaaccttac	6	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49676823	C	C	49676823	1	2	185	0	1	0	0	0	0	0	0	0	3912	957	33	4		4	CRISP2	6	49676823	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2029884	49676823	121438244	323	148453											
COL21A1	81578	broad.mit.edu	37	chr6	55922481	55922481	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtttggtccttttctgaacgGatctcttctggcaattacac	8	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55922481	A	A	55922481	3	1	185	1	0	0	0	0	1	0	0	0	3712	1174	41	4	29	4	COL21A1	6	55922481	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	6245658	55922481	115192586	324	148454											
BEND6	221336	broad.mit.edu	37	chr6	56857168	56857168	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttattgtgcctgccttcTattttagagagacccatatt	6	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56857168	C	C	56857168	1	2	185	0	1	0	0	0	0	0	0	0	1407	1537	53	5		5	BEND6	6	56857168	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	934687	56857168	114257899	325	148455											
EYS	346007	broad.mit.edu	37	chr6	66115312	66115313	+	Intron	DNP	GA	TT	TT													aaaaggaaggaaggaaagaaGaaatgagcatagatatgtag							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	66115313	TT	TT	66115312	1	4	185	0	1	0	0	0	0	0	0	0	5375	957	33	3		3	EYS	6	66115312	Intron	DNP	GA	TCGA-64-1678-01A-01W-0928-08	9258144	66115312	104999755	326	148456											
COL19A1	1310	broad.mit.edu	37	chr6	70850885	70850885	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaaaggagatagagtaAgtagatattttatcactacc	9	4	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70850885	T	T	70850885	1	4	185	0	1	0	0	0	0	0	0	0	3708	87	3	5		5	COL19A1	6	70850885	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	4735573	70850885	100264182	327	148457											
ORC3L	23595	broad.mit.edu	37	chr6	88331837	88331837	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatatttgtgcatcttaatAtttatacagtgaagtactgg	7	5	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88331837	C	C	88331837	1	2	185	0	1	0	0	0	0	0	0	0	11357	464	16	5		5	ORC3L	6	88331837	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	17480952	88331837	82783230	328	148458											
GABRR2	2570	broad.mit.edu	37	chr6	90024816	90024816	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtccatcgcttcctcttGggttttctgctctccacgag	8	15	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90024816	A	A	90024816	2	1	185	1	0	0	0	0	0	0	0	1	6237	1335	47	4		4	GABRR2	6	90024816	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1692979	90024816	81090251	329	148459											
KIAA0776	23376	broad.mit.edu	37	chr6	96972164	96972164	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctctctgttctatgcagGactttgaccaaaacttaaat	7	9	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96972164	T	T	96972164	1	4	185	0	1	0	0	0	0	0	0	0	8263	1189	41	3		3	KIAA0776	6	96972164	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	6947348	96972164	74142903	330	148460											
RFPL4B	442247	broad.mit.edu	37	chr6	112671067	112671067	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcgatgtgccccttgtgtCgagacgtggtgaaggtacct	15	9	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112671067	T	T	112671067	4	4	185	1	0	0	0	0	0	1	0	0	13364	876	31	4	159	4	RFPL4B	6	112671067	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	15698903	112671067	58444000	331	148461											
NCOA7	135112	broad.mit.edu	37	chr6	126210971	126210971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagggagagcccctcccgGtaaaactgaactcttctaca	8	12	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126210971	T	T	126210971	3	4	185	1	0	0	0	0	1	0	0	0	10329	1261	44	3	1801	3	NCOA7	6	126210971	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	13539904	126210971	44904096	332	148462											
PTPRK	5796	broad.mit.edu	37	chr6	128312423	128312423	+	Intron	DEL	T	-	-													tttttatgacaaaaaaattcTttttcttcctcttacccggc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128312423	-	-	128312423	6	5	185	0	1	1	0	1	0	0	0	0	12913	1624	56	0		0	PTPRK	6	128312423	Intron	DEL	T	TCGA-64-1678-01A-01W-0928-08	2101452	128312423	42802644	333	148463											
SASH1	23328	broad.mit.edu	37	chr6	148855767	148855767	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaaatgatacttactaatCttttgattagcctgaaggtg	8	6	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148855767	T	T	148855767	1	4	185	0	1	0	0	0	0	0	0	0	13960	928	32	4		4	SASH1	6	148855767	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	20543344	148855767	22259300	334	148464											
UST	10090	broad.mit.edu	37	chr6	149285749	149285749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccactgcctgaggagtgGgccctccaccagggaaggtt	13	14	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149285749	T	T	149285749	1	4	185	0	1	0	0	0	0	0	0	0	17220	1247	43	2		2	UST	6	149285749	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	429982	149285749	21829318	335	148465											
AKAP12	9590	broad.mit.edu	37	chr6	151646936	151646936	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaggcaggagactaggcgtCtgccggggagggcagggacc	20	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151646936	T	T	151646936	1	4	185	0	1	0	0	0	0	0	0	0	448	928	32	4		4	AKAP12	6	151646936	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2361187	151646936	19468131	336	148466											
ARID1B	57492	broad.mit.edu	37	chr6	157192628	157192628	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacagatggggacctgaggTtttcttggagtgattaagtt	13	4	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157192628	C	C	157192628	1	2	185	0	1	0	0	0	0	0	0	0	916	1740	60	5		5	ARID1B	6	157192628	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	5545692	157192628	13922439	337	148467											
PDE10A	10846	broad.mit.edu	37	chr6	165806140	165806140	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgcacacccacctcaaGgtctgtgaaaagcgtgtgat	11	10	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165806140	A	A	165806140	3	1	185	1	0	0	0	0	1	0	0	0	11724	1000	35	4	746	4	PDE10A	6	165806140	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	8613512	165806140	5308927	338	148468											
MLLT4	4301	broad.mit.edu	37	chr6	168363034	168363034	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtttgtgtatatgtgtgtCtacttgtcttaatgtgtgca	11	4	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168363034	T	T	168363034	1	4	185	0	1	0	0	0	0	0	0	0	9722	928	32	4		4	MLLT4	6	168363034	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2556894	168363034	2752033	339	148469											
SUN1	23353	broad.mit.edu	37	chr7	899726	899726	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacagtggaagtgatttagTtaaaataggacatttgtgtc	11	3	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	899726	C	C	899726	1	2	185	0	1	0	0	0	0	0	0	0	15509	1740	60	5		5	SUN1	7	899726	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08		899726	158238937	340	148470											
CARD11	84433	broad.mit.edu	37	chr7	2976689	2976689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggtccaggttgttgctGtccttggagaggcgccgcag	15	11	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2976689	T	T	2976689	3	4	185	1	0	0	0	0	1	0	0	0	2671	1368	48	3	2209	3	CARD11	7	2976689	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2076963	2976689	156161974	341	148471											
MEOX2	4223	broad.mit.edu	37	chr7	15652213	15652213	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcttccacttcatccgCctgttttggaaccagacttt	5	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15652213	A	A	15652213	3	1	185	1	0	0	0	0	1	0	0	0	9567	738	26	3	204	3	MEOX2	7	15652213	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	12675524	15652213	143486450	342	148472											
HDAC9	9734	broad.mit.edu	37	chr7	18988570	18988570	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaatagcctcttggtcaGtcattaggaagcagttcttc	9	9	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18988570	T	T	18988570	1	4	185	0	1	0	0	0	0	0	0	0	7081	1044	36	3		3	HDAC9	7	18988570	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3336357	18988570	140150093	343	148473											
ABCB5	340273	broad.mit.edu	37	chr7	20685588	20685589	+	5'Flank	DEL	AC	-	-													gttctgtttttgtaaggtatAcacagaatctcaaagatgca							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20685589	-	-	20685588	6	5	185	0	1	1	0	1	0	0	0	0	44	391	14	0		0	ABCB5	7	20685588	5'Flank	DEL	AC	TCGA-64-1678-01A-01W-0928-08	1697018	20685588	138453075	344	148474											
ABCB5	340273	broad.mit.edu	37	chr7	20698196	20698196	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaacagaggatcgcaaTtgctcgtgccttagttcgaa	11	9	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20698196	A	A	20698196	3	1	185	1	0	0	0	0	1	0	0	0	44	1493	52	5	1654	5	ABCB5	7	20698196	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	12608	20698196	138440467	345	148475											
DNAH11	8701	broad.mit.edu	37	chr7	21730602	21730602	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttacttgaaaattcctaagGaaaatcctatatgatttcct	4	7	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21730602	C	C	21730602	1	2	185	0	1	0	0	0	0	0	0	0	4639	1189	41	4		4	DNAH11	7	21730602	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1032406	21730602	137408061	346	148476											
GPNMB	10457	broad.mit.edu	37	chr7	23286420	23286420	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactgttgctcttggtggaCgggcccagaggaattcagag	14	9	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23286420	T	T	23286420	1	4	185	1	0	0	0	0	0	0	0	0	6685	551	19	4		4	GPNMB	7	23286420	Translation_Start_Site	SNP	C	TCGA-64-1678-01A-01W-0928-08	1555818	23286420	135852243	347	148477											
STK31	56164	broad.mit.edu	37	chr7	23821150	23821150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaatatgtaagtatttGgttctttgaagttttacatt	9	2	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23821150	T	T	23821150	1	4	185	0	1	0	0	0	0	0	0	0	15414	1363	47	2		2	STK31	7	23821150	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	534730	23821150	135317513	348	148478											
CHN2	1124	broad.mit.edu	37	chr7	29252188	29252188	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaaaaaagggagacgaggtCccagtcaagaaacagaagac	11	9	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29252188	A	A	29252188	1	1	185	0	1	0	0	0	0	0	0	0	3394	870	30	3		3	CHN2	7	29252188	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5431038	29252188	129886475	349	148479											
ANLN	54443	broad.mit.edu	37	chr7	36462361	36462361	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaggatcagttactttgTcagaaatccgcttgcctcta	7	11	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36462361	A	A	36462361	3	1	185	1	0	0	0	0	1	0	0	0	694	1667	58	5	2473	5	ANLN	7	36462361	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	7210173	36462361	122676302	350	148480											
POU6F2	11281	broad.mit.edu	37	chr7	39379247	39379247	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctctccttgtagctacctCatccctgaactcccagctcc	4	18	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39379247	T	T	39379247	3	4	185	1	0	0	0	0	1	0	0	0	12381	838	29	4	536	4	POU6F2	7	39379247	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2916886	39379247	119759416	351	148481											
GLI3	2737	broad.mit.edu	37	chr7	42063147	42063147	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcatagatgacttcaggctCctgtttgctttcatctttgt	7	10	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42063147	A	A	42063147	4	1	185	1	0	0	0	0	0	1	0	0	6503	864	30	3	3349	3	GLI3	7	42063147	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2683900	42063147	117075516	352	148482											
C7orf25	79020	broad.mit.edu	37	chr7	42971661	42971661	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggatgggaaaaactaaatCgacagagtaccagcaacctc	9	10	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42971661	T	T	42971661	1	4	185	0	1	0	0	0	0	0	0	0	2405	899	31	4		4	C7orf25	7	42971661	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	908514	42971661	116167002	353	148483											
ABCA13	154664	broad.mit.edu	37	chr7	48375247	48375247	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcaggcatagtggttctAgttgactcatataattgaca	8	7	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48375247	G	G	48375247	1	3	185	0	1	0	0	0	0	0	0	0	31	435	15	5		5	ABCA13	7	48375247	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	5403586	48375247	110763416	354	148484											
DDC	1644	broad.mit.edu	37	chr7	50563117	50563117	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgaatgaatctgcaaacTgccaaagaacaagagtaaga	9	6	1	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50563117	A	A	50563117	5	1	185	1	0	0	0	0	0	0	1	0	4358	1594	55	5	591	5	DDC	7	50563117	Splice_Site	SNP	T	TCGA-64-1678-01A-01W-0928-08	2187870	50563117	108575546	355	148485											
COBL	23242	broad.mit.edu	37	chr7	51111052	51111052	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtggctgtgacttccGtacccacccatccttcccgt	8	16	0	2	rs148455307	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51111052	A	A	51111052	1	1	185	0	1	0	0	0	0	0	0	0	3685	1160	40	4		4	COBL	7	51111052	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	547935	51111052	108027611	356	148486											
ZNF479	90827	broad.mit.edu	37	chr7	57193645	57193645	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcaaagcacagctccccaGaccacattttaaggactggc	7	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57193645	T	T	57193645	1	4	185	0	1	0	0	0	0	0	0	0	18060	957	33	3		3	ZNF479	7	57193645	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	6082593	57193645	101945018	357	148487											
ZNF727	442319	broad.mit.edu	37	chr7	63530043	63530043	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggttcccaatgtcaaggaGgaagccagaccttgaaacat	10	10	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63530043	A	A	63530043	1	1	185	0	1	0	0	0	0	0	0	0	18251	1015	35	4		4	ZNF727	7	63530043	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	6336398	63530043	95608620	358	148488											
ZNF735	730291	broad.mit.edu	37	chr7	63674397	63674397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaataaaacaggtatgaCtgtctctaagccagacttga	7	8	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63674397	A	A	63674397	3	1	185	1	0	0	0	0	1	0	0	0	18253	565	20	3	183	3	ZNF735	7	63674397	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	144354	63674397	95464266	359	148489											
MAGI2	9863	broad.mit.edu	37	chr7	78131003	78131003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctttgtgtcatccatctGctccttcagctcctcaggct	8	14	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78131003	T	T	78131003	3	4	185	1	0	0	0	0	1	0	0	0	9283	1328	46	3	3583	3	MAGI2	7	78131003	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	14456606	78131003	81007660	360	148490											
CACNA2D1	781	broad.mit.edu	37	chr7	81964549	81964549	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggttccacagtatacaaatCttgatatttctcataaatct	4	8	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81964549	A	A	81964549	3	1	185	1	0	0	0	0	1	0	0	0	2574	913	32	3	3227	3	CACNA2D1	7	81964549	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3833546	81964549	77174114	361	148491											
PCLO	27445	broad.mit.edu	37	chr7	82585203	82585203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgtcaaaatacaaacttGtttttttctgtgatgactct	5	8	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82585203	T	T	82585203	3	4	185	1	0	0	0	0	1	0	0	0	11677	1377	48	3	10463	3	PCLO	7	82585203	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	620654	82585203	76553460	362	148492											
SAMD9	54809	broad.mit.edu	37	chr7	92734038	92734038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaaggtttgctactcggCtttctttgtaagctttgacc	10	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92734038	A	A	92734038	3	1	185	1	0	0	0	0	1	0	0	0	13937	797	28	3	3400	3	SAMD9	7	92734038	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	10148835	92734038	66404625	363	148493											
COL1A2	1278	broad.mit.edu	37	chr7	94029479	94029479	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctacagggcctgtctaaCctgaccttactcacttttta	5	12	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94029479	T	T	94029479	1	4	185	0	1	0	0	0	0	0	0	0	3710	522	18	4		4	COL1A2	7	94029479	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1295441	94029479	65109184	364	148494											
PPP1R9A	55607	broad.mit.edu	37	chr7	94540239	94540239	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgttgatacagaggatgctCacaagagtaatgcaactcca	10	8	1	3	rs140508899		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94540239	T	T	94540239	3	4	185	1	0	0	0	0	1	0	0	0	12479	826	29	4	816	4	PPP1R9A	7	94540239	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	510760	94540239	64598424	365	148495											
DYNC1I1	1780	broad.mit.edu	37	chr7	95657413	95657413	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtttatgtgatgaactGttttcaggaagaaacaagtc	10	4	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95657413	C	C	95657413	1	2	185	0	1	0	0	0	0	0	0	0	4882	1392	48	4		4	DYNC1I1	7	95657413	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1117174	95657413	63481250	366	148496											
SERPINE1	5054	broad.mit.edu	37	chr7	100777184	100777184	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttctgcccaagtaagccacCccgctatctccccgacctac	6	19	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100777184	G	G	100777184	1	3	185	0	1	0	0	0	0	0	0	0	14224	638	22	4		4	SERPINE1	7	100777184	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5119771	100777184	58361479	367	148497											
EMID2	136227	broad.mit.edu	37	chr7	101196669	101196669	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgcagaggtaaccatggcTgcccttcacgttccctcccg	9	16	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101196669	A	A	101196669	1	1	185	0	1	0	0	0	0	0	0	0	5134	1595	55	5		5	EMID2	7	101196669	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	419485	101196669	57941994	368	148498											
PIK3CG	5294	broad.mit.edu	37	chr7	106509787	106509787	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatatcctaagctatttaGttcagtgaaatggggacagc	10	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106509787	A	A	106509787	3	1	185	1	0	0	0	0	1	0	0	0	12011	1029	36	4	1783	4	PIK3CG	7	106509787	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5313118	106509787	52628876	369	148499											
TMEM168	64418	broad.mit.edu	37	chr7	112415414	112415414	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttacatagtacatgtacaTatgtgtatatatttacatgc	6	5	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112415414	C	C	112415414	1	2	185	0	1	0	0	0	0	0	0	0	16206	1421	49	5		5	TMEM168	7	112415414	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	5905627	112415414	46723249	370	148500											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518041	113518041	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgaagtgtatagtgattGcccagagcttactaatcctt	8	9	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113518041	A	A	113518041	4	1	185	1	0	0	0	0	0	1	0	0	12472	1328	46	4	266	4	PPP1R3A	7	113518041	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1102627	113518041	45620622	371	148501											
PTPRZ1	5803	broad.mit.edu	37	chr7	121597312	121597312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcgcggatcttctctgtGgttcatccttcactttggct	8	12	5	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121597312	T	T	121597312	1	4	185	0	1	0	0	0	0	0	0	0	12922	1363	47	2		2	PTPRZ1	7	121597312	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	8079271	121597312	37541351	372	148502											
HYAL4	23553	broad.mit.edu	37	chr7	123509169	123509169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcgcttctccaaatttcGggtgcatgaatccatgagga	10	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123509169	T	T	123509169	3	4	185	1	0	0	0	0	1	0	0	0	7536	1116	39	1	844	1	HYAL4	7	123509169	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1911857	123509169	35629494	373	148503											
SPAM1	6677	broad.mit.edu	37	chr7	123593617	123593617	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgttttcatagtcattacTctttacaatgggagtgctaa	7	6	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123593617	C	C	123593617	1	2	185	0	1	0	0	0	0	0	0	0	15102	1566	54	5		5	SPAM1	7	123593617	5'UTR	SNP	T	TCGA-64-1678-01A-01W-0928-08	84448	123593617	35545046	374	148504											
POT1	25913	broad.mit.edu	37	chr7	124493067	124493067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttactttctggcaagacCctgattccccgaccgtaact	8	13	1	2	rs76496261	byFrequency;by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124493067	A	A	124493067	3	1	185	1	0	0	0	0	1	0	0	0	12355	622	22	2	1116	2	POT1	7	124493067	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	899450	124493067	34645596	375	148505											
GRM8	2918	broad.mit.edu	37	chr7	126173844	126173844	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgccagcagcaagggaccCctttcaccgttttcttcctc	8	15	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126173844	T	T	126173844	3	4	185	1	0	0	0	0	1	0	0	0	6869	623	22	4	1196	4	GRM8	7	126173844	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1680777	126173844	32964819	376	148506											
EXOC4	60412	broad.mit.edu	37	chr7	133580492	133580492	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcactgcagcttacaggtaGagcttctgttaggggctaag	13	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133580492	T	T	133580492	1	4	185	0	1	0	0	0	0	0	0	0	5348	957	33	3		3	EXOC4	7	133580492	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	7406648	133580492	25558171	377	148507											
EXOC4	60412	broad.mit.edu	37	chr7	133580505	133580505	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtagagcttctgttagGggctaagcaaagtaacgttt	12	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133580505	T	T	133580505	1	4	185	0	1	0	0	0	0	0	0	0	5348	1247	43	2		2	EXOC4	7	133580505	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	13	133580505	25558158	378	148508											
CALD1	800	broad.mit.edu	37	chr7	134626056	134626056	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaagtcagtcTtcccatcctgtgcttccaga	5	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134626056	G	G	134626056	1	3	185	0	1	0	0	0	0	0	0	0	2607	1624	56	5		5	CALD1	7	134626056	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1045551	134626056	24512607	379	148509											
MKRN1	23608	broad.mit.edu	37	chr7	140171821	140171821	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcataaaatacctgtgagacGaaagaccacaaaactggatt	8	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140171821	A	A	140171821	1	1	185	0	1	0	0	0	0	0	0	0	9699	1073	37	4		4	MKRN1	7	140171821	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	5545765	140171821	18966842	380	148510											
DENND2A	27147	broad.mit.edu	37	chr7	140268664	140268664	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtgagttcttctcatgTaggaaactctttctatgtgg	9	6	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140268664	A	A	140268664	1	1	185	0	1	0	0	0	0	0	0	0	4469	1653	57	5		5	DENND2A	7	140268664	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	96843	140268664	18869999	381	148511											
PRSS37	136242	broad.mit.edu	37	chr7	141537561	141537561	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctctattgggtctcctttCactctcctttcctcctctct	3	16	5	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141537561	T	T	141537561	1	4	185	0	1	0	0	0	0	0	0	0	12732	841	29	4		4	PRSS37	7	141537561	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1268897	141537561	17601102	382	148512											
KEL	3792	broad.mit.edu	37	chr7	142639572	142639572	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgaggtccaggctgggCaggacagtctccccatggtg	17	11	1	1	rs140592001	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142639572	A	A	142639572	2	1	185	1	0	0	0	0	0	0	0	1	8212	697	25	3		3	KEL	7	142639572	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	1102011	142639572	16499091	383	148513											
KEL	3792	broad.mit.edu	37	chr7	142650727	142650727	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgatccctccatcctctctGtgccacccaccccacgcttc	4	21	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142650727	C	C	142650727	1	2	185	0	1	0	0	0	0	0	0	0	8212	1392	48	4		4	KEL	7	142650727	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	11155	142650727	16487936	384	148514											
OR2F2	135948	broad.mit.edu	37	chr7	143633237	143633237	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggggcctggcataaactAttagagaaattctctgggtt	12	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143633237	G	G	143633237	2	3	185	1	0	0	0	0	0	0	0	1	11091	436	16	5		5	OR2F2	7	143633237	Silent	SNP	A	TCGA-64-1678-01A-01W-0928-08	982510	143633237	15505426	385	148515											
ZNF398	57541	broad.mit.edu	37	chr7	148876178	148876178	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcccacactgtgccaGgacttttactcacccatcaa	5	17	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148876178	T	T	148876178	3	4	185	1	0	0	0	0	1	0	0	0	18012	1000	35	2	1236	2	ZNF398	7	148876178	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5242941	148876178	10262485	386	148516											
KCNH2	3757	broad.mit.edu	37	chr7	150644631	150644631	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagcagagctgggtgagCggggtagacgcaccaccgct	17	10	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150644631	A	A	150644631	1	1	185	0	1	0	0	0	0	0	0	0	8102	783	27	3		3	KCNH2	7	150644631	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1768453	150644631	8494032	387	148517											
MLL3	58508	broad.mit.edu	37	chr7	151919678	151919678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattagacgcaggcatatagGgtctgcacatgctacaatca	9	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151919678	T	T	151919678	3	4	185	1	0	0	0	0	1	0	0	0	9715	1232	43	2	11478	2	MLL3	7	151919678	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1275047	151919678	7218985	388	148518											
PTPRN2	5799	broad.mit.edu	37	chr7	157370934	157370934	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccaaatttattccattcAcaggacatttatttcatttt	3	8	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157370934	C	C	157370934	1	2	185	0	1	0	0	0	0	0	0	0	12916	174	6	5		5	PTPRN2	7	157370934	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	5451256	157370934	1767729	389	148519											
PTPRN2	5799	broad.mit.edu	37	chr7	157926787	157926787	+	Intron	DEL	A	-	-													ttccgtgagggacgtctgcgAaaggaatgctgatgtgacac							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	157926787	-	-	157926787	6	5	185	0	1	1	0	1	0	0	0	0	12916	261	9	0		0	PTPRN2	7	157926787	Intron	DEL	A	TCGA-64-1678-01A-01W-0928-08	555853	157926787	1211876	390	148520											
ESYT2	57488	broad.mit.edu	37	chr7	158529746	158529746	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaataccgtacctttgatCaaacactggatttaatgttt	5	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158529746	A	A	158529746	3	1	185	1	0	0	0	0	1	0	0	0	5307	826	29	3	224	3	ESYT2	7	158529746	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	602959	158529746	608917	391	148521											
MYOM2	9172	broad.mit.edu	37	chr8	1998830	1998830	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaggcctcatgatgctTgcgagggagctcagtgttgt	16	8	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1998830	C	C	1998830	1	2	185	0	1	0	0	0	0	0	0	0	10186	1827	63	5		5	MYOM2	8	1998830	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08		1998830	144365192	392	148522											
TMEM66	51669	broad.mit.edu	37	chr8	29927564	29927564	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgcaatatctaagtccgtCttacattcccactgtgaaga	6	10	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29927564	T	T	29927564	2	4	185	1	0	0	0	0	0	0	0	1	16318	912	32	4		4	TMEM66	8	29927564	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	27928734	29927564	116436458	393	148523											
UNC5D	137970	broad.mit.edu	37	chr8	35541258	35541259	+	Intron	INS	-	A	A													gtctacggtaagaccattccINSaaaggccaggaatggatagg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35541259	A	A	35541258	6	5	185	0	1	1	1	0	0	0	0	0	17121	609	21	0		0	UNC5D	8	35541258	Intron	INS	-	TCGA-64-1678-01A-01W-0928-08	5613694	35541258	110822764	394	148524											
ADAM32	203102	broad.mit.edu	37	chr8	39027483	39027483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtttcctggaacaatGtgtattactcgttattctgc	9	8	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39027483	T	T	39027483	3	4	185	1	0	0	0	0	1	0	0	0	249	1377	48	3	920	3	ADAM32	8	39027483	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3486225	39027483	107336539	395	148525											
ANK1	286	broad.mit.edu	37	chr8	41552150	41552150	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttggtgacggcattctccGggaacgttgcctgtaccagg	13	11	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41552150	C	C	41552150	3	2	185	1	0	0	0	0	1	0	0	0	620	1116	39	4	2744	4	ANK1	8	41552150	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2524667	41552150	104811872	396	148526											
PRKDC	5591	broad.mit.edu	37	chr8	48855770	48855770	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagttgaatttgtggtaccTgtttcagaaaggattccagg	11	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48855770	A	A	48855770	3	1	185	1	0	0	0	0	1	0	0	0	12627	1594	55	5	11728	5	PRKDC	8	48855770	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	7303620	48855770	97508252	397	148527											
SNTG1	54212	broad.mit.edu	37	chr8	51351045	51351045	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaaaaaaacaacaaaaaaTggtgtgtaagtatagtatta	6	4	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51351045	A	A	51351045	1	1	185	0	1	0	0	0	0	0	0	0	14988	1479	51	5		5	SNTG1	8	51351045	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	2495275	51351045	95012977	398	148528											
PXDNL	137902	broad.mit.edu	37	chr8	52370158	52370158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtctgactctctggtGtttcggatcatgagtgtgcc	12	10	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52370158	T	T	52370158	3	4	185	1	0	0	0	0	1	0	0	0	12956	1368	48	3	3569	3	PXDNL	8	52370158	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1019113	52370158	93993864	399	148529											
XKR4	114786	broad.mit.edu	37	chr8	56436303	56436303	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagacgcatttgccattccAgcgctgtgtgtggtgttcag	13	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56436303	T	T	56436303	2	4	185	1	0	0	0	0	0	0	0	1	17560	175	7	5		5	XKR4	8	56436303	Silent	SNP	A	TCGA-64-1678-01A-01W-0928-08	4066145	56436303	89927719	400	148530											
NSMAF	8439	broad.mit.edu	37	chr8	59512611	59512611	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaaaaattcacctattttCagctaaggaaatagcaatag	5	6	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59512611	A	A	59512611	1	1	185	0	1	0	0	0	0	0	0	0	10769	841	29	3		3	NSMAF	8	59512611	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	3076308	59512611	86851411	401	148531											
ASPH	444	broad.mit.edu	37	chr8	62595152	62595152	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatatcactgtaagtcagtCaaagcatagatctactcaga	6	9	5	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62595152	T	T	62595152	1	4	185	0	1	0	0	0	0	0	0	0	1057	841	29	4		4	ASPH	8	62595152	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	3082541	62595152	83768870	402	148532											
ARFGEF1	10565	broad.mit.edu	37	chr8	68208800	68208800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcttgcagtacagtccCttcatgaatttctatgtgtt	7	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68208800	A	A	68208800	3	1	185	1	0	0	0	0	1	0	0	0	854	681	24	2	5184	2	ARFGEF1	8	68208800	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5613648	68208800	78155222	403	148533											
PREX2	80243	broad.mit.edu	37	chr8	69012132	69012132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaaattattatttgaatGtcaaatttaaatcaattttt	4	2	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69012132	T	T	69012132	1	4	185	0	1	0	0	0	0	0	0	0	12583	1392	48	3		3	PREX2	8	69012132	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	803332	69012132	77351890	404	148534											
C8orf84	157869	broad.mit.edu	37	chr8	73993266	73993266	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcagtaccataggtgtgccCgcagtcctggccctgcgggg	14	13	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73993266	G	G	73993266	3	3	185	1	0	0	0	0	1	0	0	0	2466	652	23	4	413	4	C8orf84	8	73993266	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4981134	73993266	72370756	405	148535											
PI15	51050	broad.mit.edu	37	chr8	75737519	75737519	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccgtcagcagtgcactccTgttctcccttctctgtgaag	9	14	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75737519	C	C	75737519	3	2	185	1	0	0	0	0	1	0	0	0	11963	1580	55	5	37	5	PI15	8	75737519	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	1744253	75737519	70626503	406	148536											
ZFHX4	79776	broad.mit.edu	37	chr8	77767417	77767417	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattggcttctacagtgtcaAcacctgttagtaaaacagca	7	9	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77767417	G	G	77767417	3	3	185	1	0	0	0	0	1	0	0	0	17761	43	2	5	8294	5	ZFHX4	8	77767417	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	2029898	77767417	68596605	407	148537											
FAM164A	51101	broad.mit.edu	37	chr8	79585913	79585913	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattggagaattgttaccttGctaccgggtagaagttccct	10	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79585913	T	T	79585913	1	4	185	0	1	0	0	0	0	0	0	0	5523	1334	46	3		3	FAM164A	8	79585913	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1818496	79585913	66778109	408	148538											
IMPA1	3612	broad.mit.edu	37	chr8	82588523	82588523	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaggaaatctttttttAaaaaaaaggacaaaatacaa	4	4	1	0	rs72422225		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82588523	T	T	82588523	1	4	185	0	1	0	0	0	0	0	0	0	7792	377	13	5		5	IMPA1	8	82588523	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	3002610	82588523	63775499	409	148539											
CNGB3	54714	broad.mit.edu	37	chr8	87738759	87738759	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttttattaaatgctcacCtgtttggaccttctttcccg	7	10	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87738759	T	T	87738759	3	4	185	1	0	0	0	0	1	0	0	0	3633	695	24	4	2155	4	CNGB3	8	87738759	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5150236	87738759	58625263	410	148540											
NBN	4683	broad.mit.edu	37	chr8	90982638	90982638	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatccatttcttctgacagtCaggaattaaggtctgtgagt	9	7	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90982638	G	G	90982638	3	3	185	1	0	0	0	0	1	0	0	0	10285	826	29	4	1454	4	NBN	8	90982638	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3243879	90982638	55381384	411	148541											
KIAA1429	25962	broad.mit.edu	37	chr8	95522735	95522735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacaattgaacacaaataCgccgtaacatatgttgaatg	6	9	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95522735	A	A	95522735	3	1	185	1	0	0	0	0	1	0	0	0	8301	536	19	3	1946	3	KIAA1429	8	95522735	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4540097	95522735	50841287	412	148542											
ODF1	4956	broad.mit.edu	37	chr8	103573182	103573182	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagctctcccaatgtttctCctctccttcccatggcccct	5	19	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103573182	G	G	103573182	1	3	185	0	1	0	0	0	0	0	0	0	10921	870	30	4		4	ODF1	8	103573182	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	8050447	103573182	42790840	413	148543											
CSMD3	114788	broad.mit.edu	37	chr8	113392679	113392679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcaaaagatggggtattGttgttcctgaaatgatatat	9	3	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113392679	T	T	113392679	3	4	185	1	0	0	0	0	1	0	0	0	3980	1377	48	3	5221	3	CSMD3	8	113392679	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	9819497	113392679	32971343	414	148544											
TRPS1	7227	broad.mit.edu	37	chr8	116617221	116617221	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgccaatgaatgttccaccTgaagtcacctggagaacaga	9	10	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116617221	A	A	116617221	2	1	185	1	0	0	0	0	0	0	0	1	16718	1567	55	5		5	TRPS1	8	116617221	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08	3224542	116617221	29746801	415	148545											
ENPP2	5168	broad.mit.edu	37	chr8	120580440	120580440	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaggatacattggaacCatattggttacaaggaatgc	10	6	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120580440	A	A	120580440	3	1	185	1	0	0	0	0	1	0	0	0	5172	594	21	2	501	2	ENPP2	8	120580440	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3963219	120580440	25783582	416	148546											
DEPDC6	64798	broad.mit.edu	37	chr8	120977678	120977678	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattgggcagcttttgctgcAggaacaaacagccagcccca	10	12	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120977678	T	T	120977678	1	4	185	0	1	0	0	0	0	0	0	0	4483	203	7	5		5	DEPDC6	8	120977678	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	397238	120977678	25386344	417	148547											
FER1L6	654463	broad.mit.edu	37	chr8	125015557	125015557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggcctccaccactcaccCggagaagccactggtgacag	10	15	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125015557	A	A	125015557	3	1	185	1	0	0	0	0	1	0	0	0	5872	652	23	1	1716	1	FER1L6	8	125015557	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4037879	125015557	21348465	418	148548											
KIAA0196	9897	broad.mit.edu	37	chr8	126061389	126061389	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgatggaatccatccatggtCgctcccaactctttcagctt	7	14	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126061389	A	A	126061389	2	1	185	1	0	0	0	0	0	0	0	1	8231	871	31	3		3	KIAA0196	8	126061389	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	1045832	126061389	20302633	419	148549											
ADCY8	114	broad.mit.edu	37	chr8	131795974	131795974	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttgaatgaatgcttgttGatctcctgtatgctttctgt	9	6	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131795974	T	T	131795974	2	4	185	1	0	0	0	0	0	0	0	1	300	1280	45	3		3	ADCY8	8	131795974	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	5734585	131795974	14568048	420	148550											
ADCY8	114	broad.mit.edu	37	chr8	131897086	131897086	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgcaatgtttttaaatcAtgttgcattgcaaacagtaa	6	5	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131897086	T	T	131897086	1	4	185	0	1	0	0	0	0	0	0	0	300	232	8	5		5	ADCY8	8	131897086	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	101112	131897086	14466936	421	148551											
KHDRBS3	10656	broad.mit.edu	37	chr8	136657432	136657432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccttaaagatattaatGggaagagaataaggacattt	9	3	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136657432	T	T	136657432	1	4	185	0	1	0	0	0	0	0	0	0	8218	1363	47	2		2	KHDRBS3	8	136657432	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	4760346	136657432	9706590	422	148552											
FAM135B	51059	broad.mit.edu	37	chr8	139380052	139380052	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttcgttagtcccaaatttCctataatctgacttccccac	3	14	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139380052	A	A	139380052	1	1	185	0	1	0	0	0	0	0	0	0	5495	870	30	3		3	FAM135B	8	139380052	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2722620	139380052	6983970	423	148553											
COL22A1	169044	broad.mit.edu	37	chr8	139869406	139869406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctctatctgctgacccCatgcccacctccagcttgcc	5	20	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139869406	A	A	139869406	1	1	185	0	1	0	0	0	0	0	0	0	3713	609	21	2		2	COL22A1	8	139869406	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	489354	139869406	6494616	424	148554											
KCNK9	51305	broad.mit.edu	37	chr8	140631035	140631035	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccccgaacccaatggtagtCaacgtgatgaagcagtagta	10	10	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140631035	A	A	140631035	3	1	185	1	0	0	0	0	1	0	0	0	8142	825	29	3	537	3	KCNK9	8	140631035	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	761629	140631035	5732987	425	148555											
CNTLN	54875	broad.mit.edu	37	chr9	17298192	17298192	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcttgctttgcacaggaagGaactgcaggagctgcagaat	13	8	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17298192	C	C	17298192	3	2	185	1	0	0	0	0	1	0	0	0	3671	1175	41	4	1014	4	CNTLN	9	17298192	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08		17298192	123915239	426	148556											
SMU1	55234	broad.mit.edu	37	chr9	33076711	33076711	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtcacttccgcttgggtcGgcgtctggctcccgctctgg	13	15	3	0	rs2274763	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33076711	A	A	33076711	1	1	185	0	1	0	0	0	0	0	0	0	14931	1131	39	4		4	SMU1	9	33076711	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	15778519	33076711	108136720	427	148557											
AQP7	364	broad.mit.edu	37	chr9	33386938	33386938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggacacctggtcttgcCcggtccggcagggcctgggc	17	13	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33386938	A	A	33386938	1	1	185	0	1	0	0	0	0	0	0	0	833	638	22	2		2	AQP7	9	33386938	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	310227	33386938	107826493	428	148558											
GNE	10020	broad.mit.edu	37	chr9	36246104	36246104	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcataggaagggcagcctgcCaaaaggatgcgatcatggtc	13	9	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36246104	T	T	36246104	2	4	185	1	0	0	0	0	0	0	0	1	6586	593	21	4		4	GNE	9	36246104	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	2859166	36246104	104967327	429	148559											
TRPM3	80036	broad.mit.edu	37	chr9	73235267	73235267	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgtctttcttcctcgcctCaagggaatatcatcctgtaa	7	11	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73235267	T	T	73235267	2	4	185	1	0	0	0	0	0	0	0	1	16712	825	29	4		4	TRPM3	9	73235267	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	36989163	73235267	67978164	430	148560											
TRPM3	80036	broad.mit.edu	37	chr9	73235278	73235278	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctcgcctcaagggaatatCatcctgtaattacagggaaa	8	10	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73235278	T	T	73235278	3	4	185	1	0	0	0	0	1	0	0	0	16712	826	29	4	3360	4	TRPM3	9	73235278	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	11	73235278	67978153	431	148561											
TLE4	7091	broad.mit.edu	37	chr9	82242321	82242321	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgcaggctgtggaacgGgccaagcaggtgaccatggc	18	9	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82242321	T	T	82242321	2	4	185	1	0	0	0	0	0	0	0	1	16064	1219	43	2		2	TLE4	9	82242321	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	9007043	82242321	58971110	432	148562											
TLE4	7091	broad.mit.edu	37	chr9	82336678	82336678	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattccagggccacacagatGgagccagctgtattgacatt	10	10	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82336678	T	T	82336678	4	4	185	1	0	0	0	0	0	1	0	0	16064	1349	47	2	1927	2	TLE4	9	82336678	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	94357	82336678	58876753	433	148563											
NTRK2	4915	broad.mit.edu	37	chr9	87636371	87636371	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcccttttccccagaccGatccttcccaacgtactcct	6	18	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87636371	T	T	87636371	1	4	185	0	1	0	0	0	0	0	0	0	10802	1073	37	3		3	NTRK2	9	87636371	3'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	5299693	87636371	53577060	434	148564											
C9orf79	286234	broad.mit.edu	37	chr9	90501607	90501607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctggacgaagacaaggaGgcagaaggtgacttacggag	16	7	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90501607	T	T	90501607	3	4	185	1	0	0	0	0	1	0	0	0	2523	991	35	2	2219	2	C9orf79	9	90501607	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2865236	90501607	50711824	435	148565											
NOL8	55035	broad.mit.edu	37	chr9	95072852	95072852	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccttctgtccagctctgcCctcaaactgaggtttaattt	6	12	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95072852	A	A	95072852	3	1	185	1	0	0	0	0	1	0	0	0	10622	623	22	2	961	2	NOL8	9	95072852	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4571245	95072852	46140579	436	148566											
C9orf102	375748	broad.mit.edu	37	chr9	98678647	98678647	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcaaagacttgccaaaaaGatgtctggctggtttctcag	10	8	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98678647	T	T	98678647	3	4	185	1	0	0	0	0	1	0	0	0	2471	933	33	3	1144	3	C9orf102	9	98678647	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3605795	98678647	42534784	437	148567											
CDC14B	8555	broad.mit.edu	37	chr9	99285924	99285924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaggtctgcagatcctgaCccacgcaatggtctcggctg	12	14	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99285924	G	G	99285924	3	3	185	1	0	0	0	0	1	0	0	0	3087	507	18	4	486	4	CDC14B	9	99285924	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	607277	99285924	41927507	438	148568											
ZNF510	22869	broad.mit.edu	37	chr9	99521121	99521121	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagggtagacttcttacatAatttcccatattcattgcat	5	8	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99521121	G	G	99521121	3	3	185	1	0	0	0	0	1	0	0	0	18081	372	13	5	64	5	ZNF510	9	99521121	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	235197	99521121	41692310	439	148569											
TDRD7	23424	broad.mit.edu	37	chr9	100245651	100245651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtaggtccttggacaaaGcattttattctactcctaag	7	8	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100245651	T	T	100245651	1	4	185	0	1	0	0	0	0	0	0	0	15857	986	34	3		3	TDRD7	9	100245651	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	724530	100245651	40967780	440	148570											
TEX10	54881	broad.mit.edu	37	chr9	103088600	103088600	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacctcatgtgcagtatccCgataagcatggcagccaaac	8	13	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103088600	A	A	103088600	3	1	185	1	0	0	0	0	1	0	0	0	15894	652	23	1	854	1	TEX10	9	103088600	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2842949	103088600	38124831	441	148571											
TMEFF1	8577	broad.mit.edu	37	chr9	103204311	103204311	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtagaaaagtataaatatGtgctggaatgtaagaaaagt	10	1	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103204311	C	C	103204311	3	2	185	1	0	0	0	0	1	0	0	0	16136	1377	48	4		4	TMEFF1	9	103204311	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	115711	103204311	38009120	442	148572											
GRIN3A	116443	broad.mit.edu	37	chr9	104448937	104448937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctccatgcagttcatcgtGctgggaatgagagcaagttc	11	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104448937	T	T	104448937	3	4	185	1	0	0	0	0	1	0	0	0	6849	1310	46	3	2134	3	GRIN3A	9	104448937	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1244626	104448937	36764494	443	148573											
KLF4	9314	broad.mit.edu	37	chr9	110248160	110248160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagttcatctgagcgggCgaatttccatccacagccgt	11	12	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110248160	A	A	110248160	3	1	185	1	0	0	0	0	1	0	0	0	8419	768	27	3	131	3	KLF4	9	110248160	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5799223	110248160	30965271	444	148574											
RABGAP1	23637	broad.mit.edu	37	chr9	125748687	125748687	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgccgaatgtgtctgaAggaattgtgaggtgagactg	15	5	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125748687	T	T	125748687	3	4	185	1	0	0	0	0	1	0	0	0	13072	69	3	5	589	5	RABGAP1	9	125748687	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	15500527	125748687	15464744	445	148575											
NR6A1	2649	broad.mit.edu	37	chr9	127300525	127300525	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggtgcggtatatattGgtaatgtggaggcacagaca	13	4	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127300525	A	A	127300525	4	1	185	1	0	0	0	0	0	1	0	0	10732	1357	47	4	792	4	NR6A1	9	127300525	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1551838	127300525	13912906	446	148576											
COQ4	51117	broad.mit.edu	37	chr9	131087468	131087468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggacaccgcaccctgaaGgtcctcagggaccagatgag	12	13	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131087468	T	T	131087468	3	4	185	1	0	0	0	0	1	0	0	0	3779	991	35	2	259	2	COQ4	9	131087468	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3786943	131087468	10125963	447	148577											
NUP188	23511	broad.mit.edu	37	chr9	131731775	131731775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgcatcagtttgcgcaGgatgggcttatttgtcaggt	13	7	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131731775	T	T	131731775	3	4	185	1	0	0	0	0	1	0	0	0	10853	991	35	2	932	2	NUP188	9	131731775	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	644307	131731775	9481656	448	148578											
BAT2L1	84726	broad.mit.edu	37	chr9	134349850	134349851	+	Frame_Shift_Del	DEL	CT	-	-													ttccttttcaggaatgaaagCtctttctctgcctcactcgg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134349851	-	-	134349850	7	5	185	1	0	1	0	1	0	0	0	0	1325	796	28	0	2392	0	BAT2L1	9	134349850	Frame_Shift_Del	DEL	CT	TCGA-64-1678-01A-01W-0928-08	2618075	134349850	6863581	449	148579											
QSOX2	169714	broad.mit.edu	37	chr9	139115927	139115927	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaggaagtcaatcatcgtCtgtctgactgttcgcagctc	10	11	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139115927	T	T	139115927	2	4	185	1	0	0	0	0	0	0	0	1	12992	912	32	4		4	QSOX2	9	139115927	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	4766077	139115927	2097504	450	148580											
QSOX2	169714	broad.mit.edu	37	chr9	139115958	139115958	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcgcagctctcggtcaggtCctgccggaagcacaccaggg	13	14	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139115958	T	T	139115958	3	4	185	1	0	0	0	0	1	0	0	0	12992	869	30	4	1653	4	QSOX2	9	139115958	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	31	139115958	2097473	451	148581											
ITIH5	80760	broad.mit.edu	37	chr10	7659106	7659106	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaatgctctgttctctattGacgtcatatctaatgataaa	5	9	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7659106	T	T	7659106	2	4	185	1	0	0	0	0	0	0	0	1	7977	1277	45	3		3	ITIH5	10	7659106	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08		7659106	127875641	452	148582											
OLAH	55301	broad.mit.edu	37	chr10	15106469	15106469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatcaaccagaaccattgCatttatttttgtcaagtgca	5	9	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15106469	A	A	15106469	3	1	185	1	0	0	0	0	1	0	0	0	10946	710	25	3	547	3	OLAH	10	15106469	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	7447363	15106469	120428278	453	148583											
ST8SIA6	338596	broad.mit.edu	37	chr10	17364936	17364936	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaatgaattcttatataTttttccaaaaactcattcca	2	8	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17364936	C	C	17364936	1	2	185	0	1	0	0	0	0	0	0	0	15354	1508	52	5		5	ST8SIA6	10	17364936	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	2258467	17364936	118169811	454	148584											
PLXDC2	84898	broad.mit.edu	37	chr10	20466216	20466216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctctttcccctccaagttGcctgttagtcttggtgaatc	7	12	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20466216	T	T	20466216	1	4	185	0	1	0	0	0	0	0	0	0	12213	1334	46	3		3	PLXDC2	10	20466216	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3101280	20466216	115068531	455	148585											
ARMC3	219681	broad.mit.edu	37	chr10	23257283	23257283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagtgatagccaattgcCttgaagacatggatactatg	10	7	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23257283	A	A	23257283	3	1	185	1	0	0	0	0	1	0	0	0	956	681	24	2	807	2	ARMC3	10	23257283	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2791067	23257283	112277464	456	148586											
ARHGAP12	94134	broad.mit.edu	37	chr10	32197269	32197269	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccaaatgagcgtgtcctaTtctggctggaaactttagga	11	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32197269	A	A	32197269	3	1	185	1	0	0	0	0	1	0	0	0	867	1493	52	5	2097	5	ARHGAP12	10	32197269	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	8939986	32197269	103337478	457	148587											
ANKRD30A	91074	broad.mit.edu	37	chr10	37430752	37430752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatgaggctgcacccttGgtggaaagaacacctgacac	11	12	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37430752	T	T	37430752	3	4	185	1	0	0	0	0	1	0	0	0	658	1339	47	2	785	2	ANKRD30A	10	37430752	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5233483	37430752	98103995	458	148588											
BMS1	9790	broad.mit.edu	37	chr10	43279799	43279799	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catctccttaccccaaccttCttccttgtaggttagagtta	5	13	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43279799	T	T	43279799	1	4	185	0	1	0	0	0	0	0	0	0	1478	928	32	4		4	BMS1	10	43279799	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5849047	43279799	92254948	459	148589											
GDF2	2658	broad.mit.edu	37	chr10	48413794	48413794	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaggggaagaagcagccGcccttacactcgtaggcttc	12	13	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48413794	T	T	48413794	2	4	185	1	0	0	0	0	0	0	0	1	6378	1074	38	3		3	GDF2	10	48413794	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	5133995	48413794	87120953	460	148590											
FRMPD2	143162	broad.mit.edu	37	chr10	49393636	49393636	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtttcagtgtcacacgtacAatttctcggcccggttcagc	9	13	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49393636	T	T	49393636	2	4	185	1	0	0	0	0	0	0	0	1	6118	126	5	5		5	FRMPD2	10	49393636	Silent	SNP	A	TCGA-64-1678-01A-01W-0928-08	979842	49393636	86141111	461	148591											
CHAT	1103	broad.mit.edu	37	chr10	50824162	50824162	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtcttacccttgagaagcTagtgggaaagagagagtttg	14	5	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50824162	C	C	50824162	1	2	185	0	1	0	0	0	0	0	0	0	3344	1537	53	5		5	CHAT	10	50824162	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1430526	50824162	84710585	462	148592											
CHAT	1103	broad.mit.edu	37	chr10	50828667	50828667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccagctgaggtgaggcCttggtgctcctagctcataa	12	10	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50828667	A	A	50828667	1	1	185	0	1	0	0	0	0	0	0	0	3344	696	24	2		2	CHAT	10	50828667	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4505	50828667	84706080	463	148593											
CHAT	1103	broad.mit.edu	37	chr10	50870742	50870742	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctggcactgcgggagctgGcccgggccatgtgcaaggag	18	11	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50870742	C	C	50870742	3	2	185	1	0	0	0	0	1	0	0	0	3344	1203	42	4	1989	4	CHAT	10	50870742	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	42075	50870742	84664005	464	148594											
OGDHL	55753	broad.mit.edu	37	chr10	50943447	50943447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggggcctagccgcccccCaaccgctgccctcactccgg	12	21	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50943447	A	A	50943447	1	1	185	0	1	0	0	0	0	0	0	0	10935	609	21	2		2	OGDHL	10	50943447	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	72705	50943447	84591300	465	148595											
PCDH15	65217	broad.mit.edu	37	chr10	55721550	55721550	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcattaagattgactcGtgttattactcttccagaat	5	8	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55721550	T	T	55721550	2	4	185	1	0	0	0	0	0	0	0	1	11605	1153	40	3		3	PCDH15	10	55721550	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	4778103	55721550	79813197	466	148596											
FAM13C	220965	broad.mit.edu	37	chr10	61011256	61011256	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaaaaagtcaccgttcCtgcaaaaaattgcagctcat	6	9	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61011256	T	T	61011256	1	4	185	0	1	0	0	0	0	0	0	0	5500	696	24	4		4	FAM13C	10	61011256	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5289706	61011256	74523491	467	148597											
LRRTM3	347731	broad.mit.edu	37	chr10	68857382	68857382	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcaacctttctggcatAcgaccagcccacaataagtt	7	12	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68857382	T	T	68857382	3	4	185	1	0	0	0	0	1	0	0	0	9128	391	14	5	1584	5	LRRTM3	10	68857382	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	7846126	68857382	66677365	468	148598											
MYPN	84665	broad.mit.edu	37	chr10	69909858	69909858	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctatcattgcagctcctgTgtttacaaaggtaataaaaa	6	8	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69909858	C	C	69909858	3	2	185	1	0	0	0	0	1	0	0	0	10192	1696	59	5	1325	5	MYPN	10	69909858	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	1052476	69909858	65624889	469	148599											
NODAL	4838	broad.mit.edu	37	chr10	72195389	72195389	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcggtgtggggggccgcgGccagcactctccagctaccc	16	15	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72195389	T	T	72195389	3	4	185	1	0	0	0	0	1	0	0	0	10613	1203	42	3	507	3	NODAL	10	72195389	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2285531	72195389	63339358	470	148600											
CDH23	64072	broad.mit.edu	37	chr10	73544838	73544838	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggcaaccgcgagcgggCcttcttcatcaatgccacgg	13	14	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73544838	T	T	73544838	3	4	185	1	0	0	0	0	1	0	0	0	3138	739	26	4	6204	4	CDH23	10	73544838	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1349449	73544838	61989909	471	148601											
CDH23	64072	broad.mit.edu	37	chr10	73550900	73550900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgccaggtgtggtgaccGtgaggtcaggtgtcatcatt	17	7	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73550900	T	T	73550900	3	4	185	1	0	0	0	0	1	0	0	0	3138	1145	40	3	6588	3	CDH23	10	73550900	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	6062	73550900	61983847	472	148602											
NRG3	10718	broad.mit.edu	37	chr10	84498238	84498238	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagcatgaatgtactgttCtcacatttatgtaattgatg	8	5	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84498238	T	T	84498238	1	4	185	0	1	0	0	0	0	0	0	0	10744	928	32	4		4	NRG3	10	84498238	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	10947338	84498238	51036509	473	148603											
RGR	5995	broad.mit.edu	37	chr10	86018418	86018418	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaccctggagtgagccCcaggccaggaggctgttcca	13	15	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86018418	A	A	86018418	1	1	185	0	1	0	0	0	0	0	0	0	13400	638	22	2		2	RGR	10	86018418	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	1520180	86018418	49516329	474	148604											
LDB3	11155	broad.mit.edu	37	chr10	88478508	88478508	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgcatgccttgagacagAcatggcacaccacctgcttc	8	13	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88478508	T	T	88478508	3	4	185	1	0	0	0	0	1	0	0	0	8769	275	10	5	2260	5	LDB3	10	88478508	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	2460090	88478508	47056239	475	148605											
STAMBPL1	57559	broad.mit.edu	37	chr10	90695184	90695184	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attagtgcagtcgttagtgcGgtaggacagagcctggatgt	15	6	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90695184	A	A	90695184	1	1	185	0	1	0	0	0	0	0	0	0	15369	1131	39	4		4	STAMBPL1	10	90695184	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2216676	90695184	44839563	476	148606											
SLC16A12	387700	broad.mit.edu	37	chr10	91198784	91198784	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagtaaggctccccgccagGaaaactgttcaataaggagc	11	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91198784	A	A	91198784	3	1	185	1	0	0	0	0	1	0	0	0	14518	1174	41	4	957	4	SLC16A12	10	91198784	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	503600	91198784	44335963	477	148607											
PPP1R3C	5507	broad.mit.edu	37	chr10	93390364	93390364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcgcagtgagagagaggcCcttggagtcagcaaacacaa	13	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93390364	A	A	93390364	3	1	185	1	0	0	0	0	1	0	0	0	12474	623	22	2	683	2	PPP1R3C	10	93390364	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2191580	93390364	42144383	478	148608											
CEP55	55165	broad.mit.edu	37	chr10	95262859	95262859	+	Intron	DEL	T	-	-													tgttctaagattcttcttagTttatgtctagaaaattcgag							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95262859	-	-	95262859	6	5	185	0	1	1	0	1	0	0	0	0	3285	1740	60	0		0	CEP55	10	95262859	Intron	DEL	T	TCGA-64-1678-01A-01W-0928-08	1872495	95262859	40271888	479	148609											
ENTPD1	953	broad.mit.edu	37	chr10	97518659	97518659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgaccttctccatgagGtctgtgaggtcctctgacgt	10	11	4	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97518659	T	T	97518659	1	4	185	0	1	0	0	0	0	0	0	0	5180	1276	44	3		3	ENTPD1	10	97518659	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2255800	97518659	38016088	480	148610											
RRP12	23223	broad.mit.edu	37	chr10	99125814	99125814	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcagcaagtgatcacCgaaggaataagtgaacacgg	10	10	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99125814	A	A	99125814	1	1	185	0	1	0	0	0	0	0	0	0	13797	667	23	1		1	RRP12	10	99125814	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1607155	99125814	36408933	481	148611											
SEC31B	25956	broad.mit.edu	37	chr10	102258633	102258633	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagagctggcttagtagccCtgagagctctactatttggc	12	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102258633	G	G	102258633	1	3	185	0	1	0	0	0	0	0	0	0	14112	696	24	4		4	SEC31B	10	102258633	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	3132819	102258633	33276114	482	148612											
ELOVL3	83401	broad.mit.edu	37	chr10	103988352	103988352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaagctttgtctttctgGtgccttgtgaactgcatcct	10	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103988352	T	T	103988352	1	4	185	0	1	0	0	0	0	0	0	0	5117	1276	44	3		3	ELOVL3	10	103988352	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1729719	103988352	31546395	483	148613											
PDCD11	22984	broad.mit.edu	37	chr10	105198552	105198552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggtccatccagccacacGgtgtgttctttcggtgagtg	13	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105198552	T	T	105198552	3	4	185	1	0	0	0	0	1	0	0	0	11711	1116	39	1	4114	1	PDCD11	10	105198552	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1210200	105198552	30336195	484	148614											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105495600	105495600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcatgagtgggggattctGgctaaaactgctacagagac	13	8	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105495600	A	A	105495600	1	1	185	0	1	0	0	0	0	0	0	0	14369	1363	47	4		4	SH3PXD2A	10	105495600	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	297048	105495600	30039147	485	148615											
SORCS3	22986	broad.mit.edu	37	chr10	107023017	107023017	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaataaaactaagatccctGcccttgtggaactcacatcc	6	12	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107023017	C	C	107023017	1	2	185	0	1	0	0	0	0	0	0	0	15046	1334	46	4		4	SORCS3	10	107023017	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1527417	107023017	28511730	486	148616											
ADD3	120	broad.mit.edu	37	chr10	111872586	111872586	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaacagatgaagaaaggcCacaacccaactggattacta	8	9	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111872586	T	T	111872586	3	4	185	1	0	0	0	0	1	0	0	0	306	594	21	4	253	4	ADD3	10	111872586	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4849569	111872586	23662161	487	148617											
ADD3	120	broad.mit.edu	37	chr10	111891989	111891989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatacaggcatttgatgtatGcactaacctccctaaaatca	5	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111891989	T	T	111891989	1	4	185	0	1	0	0	0	0	0	0	0	306	1334	46	3		3	ADD3	10	111891989	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	19403	111891989	23642758	488	148618											
AFAP1L2	84632	broad.mit.edu	37	chr10	116100464	116100464	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagaatcttgaggaagtcatCcaactctgtcagcagctgtt	9	9	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116100464	T	T	116100464	3	4	185	1	0	0	0	0	1	0	0	0	355	855	30	4	2485	4	AFAP1L2	10	116100464	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4208475	116100464	19434283	489	148619											
GPR26	2849	broad.mit.edu	37	chr10	125447575	125447575	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaccagtaccgcaaaagcTgcaaggagattctgaacagg	11	10	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125447575	G	G	125447575	3	3	185	1	0	0	0	0	1	0	0	0	6749	1580	55	5	923	5	GPR26	10	125447575	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	9347111	125447575	10087172	490	148620											
EBF3	253738	broad.mit.edu	37	chr10	131671816	131671816	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaacatgttgtctgacacGgccagcacgtggccgtccac	10	14	1	1	rs150383257		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131671816	T	T	131671816	2	4	185	1	0	0	0	0	0	0	0	1	4922	1103	39	1		1	EBF3	10	131671816	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	6224241	131671816	3862931	491	148621											
FRG2B	441581	broad.mit.edu	37	chr10	135440087	135440087	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accttgcctttgtatgtgctTctcactggaatgggagaagg	12	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135440087	A	A	135440087	4	1	185	1	0	0	0	0	0	1	0	0	6107	1792	62	5	691	5	FRG2B	10	135440087	Nonsense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	3768271	135440087	94660	492	148622											
TALDO1	6888	broad.mit.edu	37	chr11	763683	763683	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgcagccggcaggcactGggagggcaggtggggtggta	21	7	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	763683	A	A	763683	1	1	185	0	1	0	0	0	0	0	0	0	15662	1363	47	4		4	TALDO1	11	763683	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08		763683	134242833	493	148623											
TALDO1	6888	broad.mit.edu	37	chr11	763700	763700	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgggagggcaggtggggtGgtacctctgccgaagccttc	17	10	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	763700	A	A	763700	1	1	185	0	1	0	0	0	0	0	0	0	15662	1363	47	4		4	TALDO1	11	763700	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	17	763700	134242816	494	148624											
SLC25A22	79751	broad.mit.edu	37	chr11	792399	792399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctcctcggacgccgggCggcccagctggttcaggttg	14	14	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	792399	A	A	792399	3	1	185	1	0	0	0	0	1	0	0	0	14599	768	27	3	336	3	SLC25A22	11	792399	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	28699	792399	134214117	495	148625											
MUC5B	727897	broad.mit.edu	37	chr11	1213224	1213224	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctgtatccaagacaacCcactcccaaccagtcaccag	4	17	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1213224	T	T	1213224	1	4	185	0	1	0	0	0	0	0	0	0	10073	638	22	4		4	MUC5B	11	1213224	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	420825	1213224	133793292	496	148626											
OR52A5	390054	broad.mit.edu	37	chr11	5153664	5153664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttaagtgcaatgtctgtgGctgccaacatggccaaaaaa	10	8	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5153664	T	T	5153664	3	4	185	1	0	0	0	0	1	0	0	0	11204	1203	42	3	744	3	OR52A5	11	5153664	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3940440	5153664	129852852	497	148627											
OR52E4	390081	broad.mit.edu	37	chr11	5905527	5905527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacttgctgggagaatgcCttctatcaatgacacccact	8	12	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5905527	A	A	5905527	3	1	185	1	0	0	0	0	1	0	0	0	11210	681	24	2	7	2	OR52E4	11	5905527	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	751863	5905527	129100989	498	148628											
OR56A4	120793	broad.mit.edu	37	chr11	6023494	6023494	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgaagtgggaaccacaCgtgctcaaggccttggccac	13	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6023494	A	A	6023494	2	1	185	1	0	0	0	0	0	0	0	1	11229	523	19	3		3	OR56A4	11	6023494	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	117967	6023494	128983022	499	148629											
OR2AG1	144125	broad.mit.edu	37	chr11	6807144	6807144	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatccactcatctacagcctGaggaataaggaggtcatgcg	10	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6807144	A	A	6807144	2	1	185	1	0	0	0	0	0	0	0	1	11078	1277	45	4		4	OR2AG1	11	6807144	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	783650	6807144	128199372	500	148630											
OR5P3	120066	broad.mit.edu	37	chr11	7846682	7846682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcaacatgggaatcaccaCggtgtagaacacagacacca	9	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7846682	A	A	7846682	3	1	185	1	0	0	0	0	1	0	0	0	11273	536	19	3	100	3	OR5P3	11	7846682	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1039538	7846682	127159834	501	148631											
TEAD1	7003	broad.mit.edu	37	chr11	12785743	12785743	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtttattttcttgaaaaGgctccaggcttcggcttgga	11	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12785743	T	T	12785743	1	4	185	1	0	0	0	0	0	0	0	0	15860	1015	35	2		2	TEAD1	11	12785743	Translation_Start_Site	SNP	G	TCGA-64-1678-01A-01W-0928-08	4939061	12785743	122220773	502	148632											
COPB1	1315	broad.mit.edu	37	chr11	14496111	14496111	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtcagagttgtggcaaggGaggcagcaacaaagaaatct	14	6	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14496111	A	A	14496111	3	1	185	1	0	0	0	0	1	0	0	0	3760	1174	41	4	1230	4	COPB1	11	14496111	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1710368	14496111	120510405	503	148633											
CALCA	796	broad.mit.edu	37	chr11	14991403	14991403	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctggccagtgtgttctcTcctacctctcgggatccacc	8	16	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14991403	G	G	14991403	1	3	185	0	1	0	0	0	0	0	0	0	2601	1566	54	5		5	CALCA	11	14991403	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	495292	14991403	120015113	504	148634											
ABCC8	6833	broad.mit.edu	37	chr11	17438419	17438419	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccacaagtcctccaccCccaccctaccccttcccttt	1	25	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17438419	A	A	17438419	1	1	185	0	1	0	0	0	0	0	0	0	58	638	22	2		2	ABCC8	11	17438419	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2447016	17438419	117568097	505	148635											
GTF2H1	2965	broad.mit.edu	37	chr11	18380137	18380137	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagctgttggagaacttctaCgacatttctggtcctgcttt	9	9	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18380137	T	T	18380137	4	4	185	1	0	0	0	0	0	1	0	0	6925	528	19	4	1463	4	GTF2H1	11	18380137	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	941718	18380137	116626379	506	148636											
MRGPRX1	259249	broad.mit.edu	37	chr11	18956125	18956125	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagaggaagtctgctgcGgccaagttgaggatgtagat	16	5	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18956125	T	T	18956125	2	4	185	1	0	0	0	0	0	0	0	1	9860	1103	39	1		1	MRGPRX1	11	18956125	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	575988	18956125	116050391	507	148637											
CSRP3	8048	broad.mit.edu	37	chr11	19209935	19209935	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caatgccatgctcggggccaGagacccagcatgaggggccc	14	14	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19209935	C	C	19209935	1	2	185	0	1	0	0	0	0	0	0	0	4003	957	33	4		4	CSRP3	11	19209935	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	253810	19209935	115796581	508	148638											
TCP11L1	55346	broad.mit.edu	37	chr11	33076262	33076262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattaaaccagttgaattacCagaaaacaggtaaggtggtt	10	5	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33076262	T	T	33076262	3	4	185	1	0	0	0	0	1	0	0	0	15836	594	21	4	293	4	TCP11L1	11	33076262	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	13866327	33076262	101930254	509	148639											
OR4C13	283092	broad.mit.edu	37	chr11	49974394	49974394	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagcagcatgtttgtagCctgctagtgggagtgtcatg	14	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49974394	T	T	49974394	2	4	185	1	0	0	0	0	0	0	0	1	11141	738	26	4		4	OR4C13	11	49974394	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	16898132	49974394	85032122	510	148640											
OR4C13	283092	broad.mit.edu	37	chr11	49974893	49974893	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagtaggaaagctatttcaAgtgtcaaataaatgtgactg	10	4	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49974893	T	T	49974893	3	4	185	1	0	0	0	0	1	0	0	0	11141	72	3	5	921	5	OR4C13	11	49974893	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	499	49974893	85031623	511	148641											
OR4C46	119749	broad.mit.edu	37	chr11	51515672	51515672	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaagcccttgcactatAtgactatcatgaaccagtgt	7	11	2	2	rs140334906		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51515672	G	G	51515672	3	3	185	1	0	0	0	0	1	0	0	0	11145	449	16	5	393	5	OR4C46	11	51515672	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	1540779	51515672	83490844	512	148642											
TRIM48	79097	broad.mit.edu	37	chr11	55032517	55032517	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacctcaactggcaagacatCccaattcttactcagtgctt	5	13	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55032517	A	A	55032517	2	1	185	1	0	0	0	0	0	0	0	1	16648	845	30	3		3	TRIM48	11	55032517	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	3516845	55032517	79973999	513	148643											
OR4C15	81309	broad.mit.edu	37	chr11	55322592	55322592	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctccttgttgcttgtctcCtatgctgtcatcttgctctc	6	13	5	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55322592	G	G	55322592	2	3	185	1	0	0	0	0	0	0	0	1	11142	668	24	4		4	OR4C15	11	55322592	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	290075	55322592	79683924	514	148644											
OR5W2	390148	broad.mit.edu	37	chr11	55681287	55681287	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacttggccggaaatacaTaaagagcagagttccctgga	11	8	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55681287	A	A	55681287	3	1	185	1	0	0	0	0	1	0	0	0	11279	1406	49	5	162	5	OR5W2	11	55681287	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	358695	55681287	79325229	515	148645											
OR5F1	338674	broad.mit.edu	37	chr11	55761338	55761338	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctcaggtaagtatagatgCaggtggcatagaacagaatt	12	5	1	3	rs58625186	byFrequency;by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55761338	G	G	55761338	3	3	185	1	0	0	0	0	1	0	0	0	11252	710	25	4	183	4	OR5F1	11	55761338	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	80051	55761338	79245178	516	148646											
OR8J1	219477	broad.mit.edu	37	chr11	56128658	56128658	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacaaatctgtgctattcCtttaaaacaatgtaatttta	4	6	1	1	rs148720229		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56128658	T	T	56128658	2	4	185	1	0	0	0	0	0	0	0	1	11335	668	24	4		4	OR8J1	11	56128658	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	367320	56128658	78877858	517	148647											
OR5AP2	338675	broad.mit.edu	37	chr11	56409890	56409890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttctgtttgatttctgCctcgaacctctttcataagt	5	10	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56409890	A	A	56409890	3	1	185	1	0	0	0	0	1	0	0	0	11238	739	26	3	928	3	OR5AP2	11	56409890	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	281232	56409890	78596626	518	148648											
CTNND1	1500	broad.mit.edu	37	chr11	57571072	57571072	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgaatgctcaagagccatCtgatgaattgtctcttccag	8	10	3	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57571072	T	T	57571072	1	4	185	0	1	0	0	0	0	0	0	0	4053	928	32	4		4	CTNND1	11	57571072	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1161182	57571072	77435444	519	148649											
OR10W1	81341	broad.mit.edu	37	chr11	58034994	58034994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcaaatggccacatagcGgtcataggccatggcagcca	13	11	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58034994	T	T	58034994	3	4	185	1	0	0	0	0	1	0	0	0	11015	1116	39	1	584	1	OR10W1	11	58034994	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	463922	58034994	76971522	520	148650											
MS4A3	932	broad.mit.edu	37	chr11	59831813	59831813	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagtagcacttcctcttttTctatgatcagaggagtagaa	8	7	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59831813	A	A	59831813	1	1	185	0	1	0	0	0	0	0	0	0	9955	1798	62	5		5	MS4A3	11	59831813	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1796819	59831813	75174703	521	148651											
MS4A10	341116	broad.mit.edu	37	chr11	60558557	60558557	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggtatccattctggggGgctgcctctgtgagtagaag	14	8	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60558557	T	T	60558557	2	4	185	1	0	0	0	0	0	0	0	1	9949	1219	43	2		2	MS4A10	11	60558557	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	726744	60558557	74447959	522	148652											
DAGLA	747	broad.mit.edu	37	chr11	61504654	61504654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttctctcggtctccagGgccgcggaaccaaacactac	10	15	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61504654	T	T	61504654	3	4	185	1	0	0	0	0	1	0	0	0	4259	1246	43	2	1422	2	DAGLA	11	61504654	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	946097	61504654	73501862	523	148653											
INCENP	3619	broad.mit.edu	37	chr11	61908956	61908956	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattaactcttgccttttccCttgtctcctccacagtgcag	5	15	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61908956	T	T	61908956	1	4	185	0	1	0	0	0	0	0	0	0	7803	696	24	4		4	INCENP	11	61908956	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	404302	61908956	73097560	524	148654											
INCENP	3619	broad.mit.edu	37	chr11	61917509	61917509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccatggagggaactgacGgccacgtttgtttttgcagt	13	8	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61917509	T	T	61917509	1	4	185	0	1	0	0	0	0	0	0	0	7803	1131	39	1		1	INCENP	11	61917509	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	8553	61917509	73089007	525	148655											
TUT1	64852	broad.mit.edu	37	chr11	62356484	62356484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgattcattctttaaccCgagagccattcactttacct	4	13	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62356484	T	T	62356484	1	4	185	0	1	0	0	0	0	0	0	0	16906	667	23	4		4	TUT1	11	62356484	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	438975	62356484	72650032	526	148656											
PPP2R5B	5526	broad.mit.edu	37	chr11	64699039	64699039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctcccacaggtgatccgGgggctgctcaaatactggcc	11	14	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64699039	T	T	64699039	2	4	185	1	0	0	0	0	0	0	0	1	12494	1219	43	2		2	PPP2R5B	11	64699039	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	2342555	64699039	70307477	527	148657											
FGF4	2249	broad.mit.edu	37	chr11	69588306	69588306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacctcttgggcaaggtacCcagcctgaagccaggggtca	13	13	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69588306	A	A	69588306	1	1	185	0	1	0	0	0	0	0	0	0	5911	638	22	2		2	FGF4	11	69588306	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4889267	69588306	65418210	528	148658											
UVRAG	7405	broad.mit.edu	37	chr11	75694667	75694667	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaatacagtcacacatcActtaatgacagggatatatt	6	7	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75694667	T	T	75694667	1	4	185	0	1	0	0	0	0	0	0	0	17235	174	6	5		5	UVRAG	11	75694667	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	6106361	75694667	59311849	529	148659											
ODZ4	26011	broad.mit.edu	37	chr11	78412653	78412653	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatgtcatcatggccaactCgtgtccttgtgtggtcacac	10	11	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78412653	A	A	78412653	4	1	185	1	0	0	0	0	0	1	0	0	10932	893	31	3	3332	3	ODZ4	11	78412653	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2717986	78412653	56593863	530	148660											
FAM181B	220382	broad.mit.edu	37	chr11	82444630	82444630	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccgacagcagcgcacCcgccggagccccggtctcat	12	19	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82444630	T	T	82444630	3	4	185	1	0	0	0	0	1	0	0	0	5555	623	22	4	1142	4	FAM181B	11	82444630	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4031977	82444630	52561886	531	148661											
ANKRD42	338699	broad.mit.edu	37	chr11	82924484	82924484	+	Intron	SNP	T	G	G													tttgtgtttaaataaaactgTaaaaactgcaaagaaaaacc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82924484	G	G	82924484	1	3	185	0	1	0	0	0	0	0	0	0	670	1653	57	5		5	ANKRD42	11	82924484	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	479854	82924484	52082032	532	148662	639	2									
ANKRD42	338699	broad.mit.edu	37	chr11	82924490	82924490	+	Intron	SNP	C	G	G													tttaaataaaactgtaaaaaCtgcaaagaaaaaccaaaaaa							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82924490	G	G	82924490	1	3	185	0	1	0	0	0	0	0	0	0	670	580	20	4		4	ANKRD42	11	82924490	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	6	82924490	52082026	533	148663	639	2									
GRM5	2915	broad.mit.edu	37	chr11	88780774	88780774	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttatctcacagcccagtgtGatgttgggcaagagtgtggg	14	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88780774	T	T	88780774	2	4	185	1	0	0	0	0	0	0	0	1	6866	1280	45	3		3	GRM5	11	88780774	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	5856284	88780774	46225742	534	148664											
CHORDC1	26973	broad.mit.edu	37	chr11	89947211	89947211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttttattgcttctactgGcttaggggcttgaatgatgt	10	6	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89947211	T	T	89947211	3	4	185	1	0	0	0	0	1	0	0	0	3396	1203	42	3	726	3	CHORDC1	11	89947211	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1166437	89947211	45059305	535	148665											
PANX1	24145	broad.mit.edu	37	chr11	93862607	93862607	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtcacgtgcattgcggtGgggctgcccctgctgctcat	14	12	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93862607	T	T	93862607	2	4	185	1	0	0	0	0	0	0	0	1	11514	1335	47	2		2	PANX1	11	93862607	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	3915396	93862607	41143909	536	148666											
MAML2	84441	broad.mit.edu	37	chr11	95825768	95825768	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggggattttctcctgcCcaaatggacctggtgatggt	14	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95825768	A	A	95825768	3	1	185	1	0	0	0	0	1	0	0	0	9298	623	22	2	2059	2	MAML2	11	95825768	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1963161	95825768	39180748	537	148667											
TRPC6	7225	broad.mit.edu	37	chr11	101359765	101359765	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaccgccattgtctgctgtCgtaaaccagaaagattctca	8	11	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101359765	T	T	101359765	3	4	185	1	0	0	0	0	1	0	0	0	16708	884	31	4	1639	4	TRPC6	11	101359765	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5533997	101359765	33646751	538	148668											
KIAA1377	57562	broad.mit.edu	37	chr11	101793446	101793446	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagcaacaaaaaatatgtcGaaatcgagcacgtaaatatt	7	7	0	0	rs142032267		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101793446	T	T	101793446	3	4	185	1	0	0	0	0	1	0	0	0	8297	1058	37	3	209	3	KIAA1377	11	101793446	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	433681	101793446	33213070	539	148669											
MMP1	4312	broad.mit.edu	37	chr11	102666324	102666324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagttcatgagctgcaacacGatgtaagttgtactctaaaa	9	7	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102666324	T	T	102666324	3	4	185	1	0	0	0	0	1	0	0	0	9741	1058	37	3	793	3	MMP1	11	102666324	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	872878	102666324	32340192	540	148670											
DDI1	414301	broad.mit.edu	37	chr11	103908205	103908205	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaatagaagaggaaatcCggcagcaaaacattgaagaa	9	7	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103908205	A	A	103908205	2	1	185	1	0	0	0	0	0	0	0	1	4361	643	23	1		1	DDI1	11	103908205	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	1241881	103908205	31098311	541	148671											
CASP5	838	broad.mit.edu	37	chr11	104869518	104869518	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacacaccattctctcagcTcattgttgcatagggcctat	7	13	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104869518	G	G	104869518	1	3	185	0	1	0	0	0	0	0	0	0	2700	1566	54	5		5	CASP5	11	104869518	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	961313	104869518	30136998	542	148672											
BCO2	83875	broad.mit.edu	37	chr11	112046197	112046197	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccgccccttaagctgcGtcctctctttgacctgtcag	8	17	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112046197	T	T	112046197	1	4	185	0	1	0	0	0	0	0	0	0	1390	1160	40	3		3	BCO2	11	112046197	5'Flank	SNP	G	TCGA-64-1678-01A-01W-0928-08	7176679	112046197	22960319	543	148673											
HTR3A	3359	broad.mit.edu	37	chr11	113860094	113860094	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaaaagttattcccaAcaaaaatttacaggctatag	5	6	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113860094	T	T	113860094	1	4	185	0	1	0	0	0	0	0	0	0	7514	58	2	5		5	HTR3A	11	113860094	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	1813897	113860094	21146422	544	148674											
FAM55B	120406	broad.mit.edu	37	chr11	114568908	114568908	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggacattatggagaaactaGaccagcagatcccacccaga	9	11	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114568908	C	C	114568908	3	2	185	1	0	0	0	0	1	0	0	0	5636	942	33	4	284	4	FAM55B	11	114568908	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	708814	114568908	20437608	545	148675											
SIK3	23387	broad.mit.edu	37	chr11	116728895	116728895	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgataagagtcagcattttGataagataaagcctggcgct	11	6	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116728895	A	A	116728895	4	1	185	1	0	0	0	0	0	1	0	0	14432	1299	45	4	839	4	SIK3	11	116728895	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2159987	116728895	18277621	546	148676											
ABCG4	64137	broad.mit.edu	37	chr11	119028922	119028922	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtaggctcacctgatccCgatccaatttcttcttccca	8	14	3	1	rs145297167	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119028922	T	T	119028922	1	4	185	0	1	0	0	0	0	0	0	0	70	667	23	4		4	ABCG4	11	119028922	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2300027	119028922	15977594	547	148677											
GRAMD1B	57476	broad.mit.edu	37	chr11	123489045	123489045	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccatttttcttccttgctCccattaggatctgtttcagg	6	13	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123489045	A	A	123489045	1	1	185	0	1	0	0	0	0	0	0	0	6814	870	30	3		3	GRAMD1B	11	123489045	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4460123	123489045	11517471	548	148678											
ROBO4	54538	broad.mit.edu	37	chr11	124754802	124754802	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acggttcaggagtaatctacAggagaagctgaaggacagtg	14	6	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124754802	T	T	124754802	2	4	185	1	0	0	0	0	0	0	0	1	13627	175	7	5		5	ROBO4	11	124754802	Silent	SNP	A	TCGA-64-1678-01A-01W-0928-08	1265757	124754802	10251714	549	148679											
ARHGAP32	9743	broad.mit.edu	37	chr11	128839021	128839021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggacacaacagtcacactGctctggcgcttgccgtgtgg	13	12	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128839021	T	T	128839021	3	4	185	1	0	0	0	0	1	0	0	0	883	1310	46	3	222	3	ARHGAP32	11	128839021	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	4084219	128839021	6167495	550	148680											
CACNA2D4	93589	broad.mit.edu	37	chr12	1953620	1953620	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctgccagcaggatgctcTgaggcctggcggtaccacag	14	12	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1953620	A	A	1953620	2	1	185	1	0	0	0	0	0	0	0	1	2577	1567	55	5		5	CACNA2D4	12	1953620	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08		1953620	131898275	551	148681											
C12orf4	57102	broad.mit.edu	37	chr12	4626138	4626138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaatttcctatcttccacCaacataattttctatatgat	1	9	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4626138	A	A	4626138	1	1	185	0	1	0	0	0	0	0	0	0	1698	609	21	2		2	C12orf4	12	4626138	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2672518	4626138	129225757	552	148682											
ANO2	57101	broad.mit.edu	37	chr12	5722051	5722051	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtgccaggcatgaaacacCagtggctgtacttgcctctt	12	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5722051	G	G	5722051	1	3	185	0	1	0	0	0	0	0	0	0	697	609	21	4		4	ANO2	12	5722051	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1095913	5722051	128129844	553	148683											
ANO2	57101	broad.mit.edu	37	chr12	5963404	5963404	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacaaggagcccaacccgtTgttcttcagtttctcgtttt	7	12	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5963404	A	A	5963404	1	1	185	0	1	0	0	0	0	0	0	0	697	1827	63	5		5	ANO2	12	5963404	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	241353	5963404	127888491	554	148684											
SCNN1A	6337	broad.mit.edu	37	chr12	6463650	6463650	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtactccacgttctggggCcgcggatagaagatgtaggc	14	10	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6463650	A	A	6463650	2	1	185	1	0	0	0	0	0	0	0	1	14040	726	26	3		3	SCNN1A	12	6463650	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	500246	6463650	127388245	555	148685											
LRRC23	10233	broad.mit.edu	37	chr12	7023108	7023108	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactcccaggggcagccaccAcatgtatgacagagaacaga	11	12	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7023108	G	G	7023108	1	3	185	0	1	0	0	0	0	0	0	0	9065	159	6	5		5	LRRC23	12	7023108	3'UTR	SNP	A	TCGA-64-1678-01A-01W-0928-08	559458	7023108	126828787	556	148686											
SLC2A3	6515	broad.mit.edu	37	chr12	8073955	8073955	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatgaggtctctcccttGttgagggagaggtggctttc	14	9	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8073955	T	T	8073955	1	4	185	0	1	0	0	0	0	0	0	0	14659	1392	48	3		3	SLC2A3	12	8073955	3'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	1050847	8073955	125777940	557	148687											
TAS2R9	50835	broad.mit.edu	37	chr12	10962482	10962482	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcagcataaagaagccatCtaatgatattacacacagca	7	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10962482	G	G	10962482	3	3	185	1	0	0	0	0	1	0	0	0	15707	913	32	4	749	4	TAS2R9	12	10962482	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2888527	10962482	122889413	558	148688											
ATF7IP	55729	broad.mit.edu	37	chr12	14610120	14610120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatatctattgactattgGtgtgtatatgtatttcatag	9	4	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14610120	T	T	14610120	1	4	185	0	1	0	0	0	0	0	0	0	1091	1276	44	3		3	ATF7IP	12	14610120	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3647638	14610120	119241775	559	148689											
PTPRO	5800	broad.mit.edu	37	chr12	15593242	15593242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaaggagactgtattcacCatgtctccctatcaggaatt	9	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15593242	A	A	15593242	1	1	185	0	1	0	0	0	0	0	0	0	12917	609	21	2		2	PTPRO	12	15593242	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	983122	15593242	118258653	560	148690											
LMO3	55885	broad.mit.edu	37	chr12	16753563	16753563	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaaaggcatccagtcatCactggtgtgcaaggataatt	9	7	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16753563	T	T	16753563	1	4	185	0	1	0	0	0	0	0	0	0	8927	841	29	4		4	LMO3	12	16753563	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1160321	16753563	117098332	561	148691											
SLCO1B3	28234	broad.mit.edu	37	chr12	21174356	21174356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggtgaaaatattcagCagataagcaaaatgttcaat	9	4	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21174356	A	A	21174356	1	1	185	0	1	0	0	0	0	0	0	0	14838	725	25	3		3	SLCO1B3	12	21174356	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4420793	21174356	112677539	562	148692											
SOX5	6660	broad.mit.edu	37	chr12	23689448	23689448	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgattgccttgtattcacCaatgcgcagctttttgccat	7	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23689448	T	T	23689448	3	4	185	1	0	0	0	0	1	0	0	0	15068	594	21	4	372	4	SOX5	12	23689448	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2515092	23689448	110162447	563	148693											
ITPR2	3709	broad.mit.edu	37	chr12	26810547	26810547	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgacttttaaaattgcctCttcatagatacctaactagt	4	9	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26810547	T	T	26810547	1	4	185	0	1	0	0	0	0	0	0	0	7991	928	32	4		4	ITPR2	12	26810547	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	3121099	26810547	107041348	564	148694											
OVCH1	341350	broad.mit.edu	37	chr12	29624753	29624753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaattgcacacagtgggctGcggtcagaatccacactggg	12	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29624753	A	A	29624753	3	1	185	1	0	0	0	0	1	0	0	0	11417	1319	46	4	1618	4	OVCH1	12	29624753	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2814206	29624753	104227142	565	148695											
IPO8	10526	broad.mit.edu	37	chr12	30837254	30837254	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcactaaatctggagaccGaattattccttccacaatgt	5	12	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30837254	T	T	30837254	2	4	185	1	0	0	0	0	0	0	0	1	7868	1057	37	3		3	IPO8	12	30837254	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1212501	30837254	103014641	566	148696											
IPO8	10526	broad.mit.edu	37	chr12	30843467	30843467	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattccacatggtcagagacTataatccgaagtaaactggg	9	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30843467	A	A	30843467	2	1	185	1	0	0	0	0	0	0	0	1	7868	1512	53	5		5	IPO8	12	30843467	Silent	SNP	T	TCGA-64-1678-01A-01W-0928-08	6213	30843467	103008428	567	148697											
H3F3C	440093	broad.mit.edu	37	chr12	31945092	31945093	+	Frame_Shift_Ins	INS	-	A	A													tacgagcagtctgcttggttINScgggccattttctttcaccc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31945093	A	A	31945092	7	5	185	1	0	1	1	0	0	0	0	0	7001	1770	62	0	402	0	H3F3C	12	31945092	Frame_Shift_Ins	INS	-	TCGA-64-1678-01A-01W-0928-08	1101625	31945092	101906803	568	148698											
ADAMTS20	80070	broad.mit.edu	37	chr12	43895977	43895977	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgacattagagtcagtataTagttttgcaaattcgatcca	7	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43895977	C	C	43895977	3	2	185	1	0	0	0	0	1	0	0	0	266	1406	49	5	5030	5	ADAMTS20	12	43895977	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	11950885	43895977	89955918	569	148699											
ADAMTS20	80070	broad.mit.edu	37	chr12	43944689	43944690	+	Intron	DNP	CC	AA	AA													gcctggatcccaagaaaatgCcaagggacccgaggacactc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	43944690	AA	AA	43944689	1	1	185	0	1	0	0	0	0	0	0	0	266	754	26	3		3	ADAMTS20	12	43944689	Intron	DNP	CC	TCGA-64-1678-01A-01W-0928-08	48712	43944689	89907206	570	148700											
MLL2	8085	broad.mit.edu	37	chr12	49448739	49448739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaactaaggacagagacCtctcccacatgtgggttggg	12	11	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49448739	A	A	49448739	3	1	185	1	0	0	0	0	1	0	0	0	9714	680	24	2	16705	2	MLL2	12	49448739	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5504050	49448739	84403156	571	148701											
FMNL3	91010	broad.mit.edu	37	chr12	50059435	50059435	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctggcagagctgagggggTagaaaagccagtaaagaacc	15	7	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50059435	C	C	50059435	1	2	185	0	1	0	0	0	0	0	0	0	6011	1653	57	5		5	FMNL3	12	50059435	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	610696	50059435	83792460	572	148702											
SCN8A	6334	broad.mit.edu	37	chr12	52056905	52056905	+	Intron	DEL	A	-	-													ggaggaggaggagcagctgcAgatacctgtttcctaacagg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52056905	-	-	52056905	6	5	185	0	1	1	0	1	0	0	0	0	14037	203	7	0		0	SCN8A	12	52056905	Intron	DEL	A	TCGA-64-1678-01A-01W-0928-08	1997470	52056905	81794990	573	148703											
SCN8A	6334	broad.mit.edu	37	chr12	52106877	52106877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgatcatcaaaagttaCaaaagcagatcctctctttt	4	9	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52106877	A	A	52106877	1	1	185	0	1	0	0	0	0	0	0	0	14037	493	17	3		3	SCN8A	12	52106877	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	49972	52106877	81745018	574	148704											
KRT6A	3853	broad.mit.edu	37	chr12	52882037	52882037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatggccatgggcagtgcaCcttaaagttgtgctcagtgc	12	9	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52882037	A	A	52882037	1	1	185	0	1	0	0	0	0	0	0	0	8551	522	18	3		3	KRT6A	12	52882037	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	775160	52882037	80969858	575	148705											
KRT1	3848	broad.mit.edu	37	chr12	53071365	53071365	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagataaatatctattcttcTgaatcgttgtgggttcaggc	9	6	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53071365	A	A	53071365	1	1	185	0	1	0	0	0	0	0	0	0	8518	1595	55	5		5	KRT1	12	53071365	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	189328	53071365	80780530	576	148706											
ESYT1	23344	broad.mit.edu	37	chr12	56536322	56536322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccttagagtgagggaacTgagagaactctgcccagctc	12	10	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56536322	A	A	56536322	1	1	185	0	1	0	0	0	0	0	0	0	5306	1595	55	5		5	ESYT1	12	56536322	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	3464957	56536322	77315573	577	148707											
DPY19L2	283417	broad.mit.edu	37	chr12	64045726	64045726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagtggaactgaggacCccttgggcctggccttcaaa	12	12	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64045726	A	A	64045726	1	1	185	0	1	0	0	0	0	0	0	0	4781	638	22	2		2	DPY19L2	12	64045726	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	7509404	64045726	69806169	578	148708											
XPOT	11260	broad.mit.edu	37	chr12	64819617	64819617	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttcttagatcacagagGtctgcggcattccagtgcaa	11	10	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64819617	T	T	64819617	3	4	185	1	0	0	0	0	1	0	0	0	17577	1261	44	3	1649	3	XPOT	12	64819617	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	773891	64819617	69032278	579	148709											
WIF1	11197	broad.mit.edu	37	chr12	65471667	65471667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgacagttagtaacatGgaaaccagagagggagaagg	14	6	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65471667	T	T	65471667	1	4	185	0	1	0	0	0	0	0	0	0	17493	1363	47	2		2	WIF1	12	65471667	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	652050	65471667	68380228	580	148710											
MSRB3	253827	broad.mit.edu	37	chr12	65857034	65857034	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttttacacctgcggatAgcagtggcaccgccgaggga	13	11	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65857034	T	T	65857034	3	4	185	1	0	0	0	0	1	0	0	0	9983	420	15	5	613	5	MSRB3	12	65857034	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	385367	65857034	67994861	581	148711											
IRAK3	11213	broad.mit.edu	37	chr12	66638684	66638684	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttgcaacaaattgtgtgtAtatttttaagatatatagct	7	3	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66638684	T	T	66638684	1	4	185	0	1	0	0	0	0	0	0	0	7894	464	16	5		5	IRAK3	12	66638684	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	781650	66638684	67213211	582	148712											
TRHDE	29953	broad.mit.edu	37	chr12	72680664	72680664	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcacagacccctctcatgtCcacatattatttagcctggg	6	13	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72680664	T	T	72680664	3	4	185	1	0	0	0	0	1	0	0	0	16603	855	30	4	989	4	TRHDE	12	72680664	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	6041980	72680664	61171231	583	148713											
LRRIQ1	84125	broad.mit.edu	37	chr12	85434223	85434223	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatttgacacataattttGataataaacactttcacagt	3	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85434223	T	T	85434223	1	4	185	0	1	0	0	0	0	0	0	0	9116	1305	45	3		3	LRRIQ1	12	85434223	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	12753559	85434223	48417672	584	148714											
LRRIQ1	84125	broad.mit.edu	37	chr12	85546113	85546113	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccgcttcccttcacaaaCactgcttctttcaaaccagc	3	18	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85546113	T	T	85546113	3	4	185	1	0	0	0	0	1	0	0	0	9116	478	17	4	4463	4	LRRIQ1	12	85546113	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	111890	85546113	48305782	585	148715											
TMTC3	160418	broad.mit.edu	37	chr12	88553910	88553910	+	Frame_Shift_Del	DEL	G	-	-													gtatggactccaattgccttGacagtgtttttagtggctgt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88553910	-	-	88553910	7	5	185	1	0	1	0	1	0	0	0	0	16385	1281	45	0	542	0	TMTC3	12	88553910	Frame_Shift_Del	DEL	G	TCGA-64-1678-01A-01W-0928-08	3007797	88553910	45297985	586	148716											
CLLU1OS	574016	broad.mit.edu	37	chr12	92814731	92814731	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attattattgttatgattccTgctgctctcccacatttccc	4	12	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92814731	C	C	92814731	1	2	185	0	1	0	0	0	0	0	0	0	3573	1595	55	5		5	CLLU1OS	12	92814731	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	4260821	92814731	41037164	587	148717											
APAF1	317	broad.mit.edu	37	chr12	99042113	99042113	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtagctcatggttgacagctCagagagagaaagatctgagg	14	6	3	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99042113	T	T	99042113	1	4	185	0	1	0	0	0	0	0	0	0	757	841	29	4		4	APAF1	12	99042113	5'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	6227382	99042113	34809782	588	148718											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100444041	100444041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagatttctgtatcttccCctcggatgtcaatttcccca	6	13	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100444041	A	A	100444041	3	1	185	1	0	0	0	0	1	0	0	0	17095	623	22	2	791	2	UHRF1BP1L	12	100444041	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1401928	100444041	33407854	589	148719											
NR1H4	9971	broad.mit.edu	37	chr12	100926360	100926360	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggaaatgcaaagagatGggaatgttggctgaatgtat	13	3	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100926360	A	A	100926360	3	1	185	1	0	0	0	0	1	0	0	0	10714	1348	47	4	580	4	NR1H4	12	100926360	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	482319	100926360	32925535	590	148720											
NR1H4	9971	broad.mit.edu	37	chr12	100926373	100926373	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagagatgggaatgttggctGaatgtatgtatacaggtatt	13	2	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100926373	A	A	100926373	3	1	185	1	0	0	0	0	1	0	0	0	10714	1291	45	4	593	4	NR1H4	12	100926373	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	13	100926373	32925522	591	148721											
SLC5A8	160728	broad.mit.edu	37	chr12	101555652	101555652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaataattaaactagttgGcaataggatcatagtaaaat	7	3	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101555652	T	T	101555652	1	4	185	0	1	0	0	0	0	0	0	0	14785	1218	42	3		3	SLC5A8	12	101555652	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	629279	101555652	32296243	592	148722											
SLC5A8	160728	broad.mit.edu	37	chr12	101573854	101573854	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcgcagccattccaatacAcagggctccatacaccacac	6	17	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101573854	T	T	101573854	3	4	185	1	0	0	0	0	1	0	0	0	14785	159	6	5	670	5	SLC5A8	12	101573854	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	18202	101573854	32278041	593	148723											
GNPTAB	79158	broad.mit.edu	37	chr12	102183810	102183810	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcacccaggtgtaaacaaCgtcaatcggcatgggcagac	10	11	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102183810	T	T	102183810	3	4	185	1	0	0	0	0	1	0	0	0	6609	536	19	4	3617	4	GNPTAB	12	102183810	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	609956	102183810	31668085	594	148724											
STAB2	55576	broad.mit.edu	37	chr12	104030832	104030832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaatactgcagtttgggGgtcttaagaactggttattc	13	5	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104030832	T	T	104030832	1	4	185	0	1	0	0	0	0	0	0	0	15356	1247	43	2		2	STAB2	12	104030832	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1847022	104030832	29821063	595	148725											
CKAP4	10970	broad.mit.edu	37	chr12	106633077	106633077	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcctgactgagcagcgTgtgcacctgctcctgcacct	11	14	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106633077	A	A	106633077	3	1	185	1	0	0	0	0	1	0	0	0	3475	1696	59	5	278	5	CKAP4	12	106633077	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	2602245	106633077	27218818	596	148726											
BTBD11	121551	broad.mit.edu	37	chr12	108042929	108042929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggggcatccaccgaatgGctttgagatgatgcgtcttt	13	8	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108042929	T	T	108042929	1	4	185	0	1	0	0	0	0	0	0	0	1548	1218	42	3		3	BTBD11	12	108042929	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1409852	108042929	25808966	597	148727											
SELPLG	6404	broad.mit.edu	37	chr12	109017819	109017819	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcatccaggccagtagaacGccttgcagcaggctccacag	11	14	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109017819	C	C	109017819	3	2	185	1	0	0	0	0	1	0	0	0	14133	1087	38	4	951	4	SELPLG	12	109017819	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	974890	109017819	24834076	598	148728											
GPN3	51184	broad.mit.edu	37	chr12	110903039	110903039	+	Intron	SNP	G	A	A													tctgtaatgtcacaaggcatGagaggttaaagcaacaggta							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110903039	A	A	110903039	1	1	185	0	1	0	0	0	0	0	0	0	6684	1305	45	4		4	GPN3	12	110903039	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1885220	110903039	22948856	599	148729	640	2									
GPN3	51184	broad.mit.edu	37	chr12	110903041	110903041	+	Intron	SNP	G	A	A													tgtaatgtcacaaggcatgaGaggttaaagcaacaggtagt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110903041	A	A	110903041	1	1	185	0	1	0	0	0	0	0	0	0	6684	957	33	4		4	GPN3	12	110903041	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2	110903041	22948854	600	148730	640	2									
CCDC63	160762	broad.mit.edu	37	chr12	111321993	111321993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaattttgctcggttcaCgtatgtcacggagctcaaca	10	9	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111321993	A	A	111321993	3	1	185	1	0	0	0	0	1	0	0	0	2862	536	19	3	1039	3	CCDC63	12	111321993	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	418952	111321993	22529902	601	148731											
C12orf51	283450	broad.mit.edu	37	chr12	112740083	112740083	+	Intron	DEL	T	-	-													ctcgaagggcaggtggtctcTtagtggggacgccccctttg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112740083	-	-	112740083	6	5	185	0	1	1	0	1	0	0	0	0	1709	1624	56	0		0	C12orf51	12	112740083	Intron	DEL	T	TCGA-64-1678-01A-01W-0928-08	1418090	112740083	21111812	602	148732											
C12orf51	283450	broad.mit.edu	37	chr12	112744003	112744003	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcatggtgctgccaatgggGaggtgattggctggcattgg	17	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112744003	A	A	112744003	2	1	185	1	0	0	0	0	0	0	0	1	1709	1161	41	4		4	C12orf51	12	112744003	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	3920	112744003	21107892	603	148733											
TBX5	6910	broad.mit.edu	37	chr12	114839736	114839736	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctccatgccctgcaagaagGagaaaaaagtcacactaaca	7	12	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114839736	C	C	114839736	1	2	185	0	1	0	0	0	0	0	0	0	15783	1189	41	4		4	TBX5	12	114839736	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2095733	114839736	19012159	604	148734											
SRRM4	84530	broad.mit.edu	37	chr12	119554754	119554754	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggcaggtcctcatcctaTagcccatcgcctgtcaagaa	8	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119554754	A	A	119554754	4	1	185	1	0	0	0	0	0	1	0	0	15289	1413	49	5	392	5	SRRM4	12	119554754	Nonsense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	4715018	119554754	14297141	605	148735											
PRKAB1	5564	broad.mit.edu	37	chr12	120112183	120112183	+	Silent	SNP	C	T	T													cttggcacagttaacaacatCattcaagtgaagaaaactga							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120112183	T	T	120112183	2	4	185	1	0	0	0	0	0	0	0	1	12601	816	29	4		4	PRKAB1	12	120112183	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	557429	120112183	13739712	606	148736	641	2									
PRKAB1	5564	broad.mit.edu	37	chr12	120112187	120112187	+	Nonsense_Mutation	SNP	C	T	T													gcacagttaacaacatcattCaagtgaagaaaactgacttt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120112187	T	T	120112187	4	4	185	1	0	0	0	0	0	1	0	0	12601	827	29	4	474	4	PRKAB1	12	120112187	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4	120112187	13739708	607	148737	641	2									
GCN1L1	10985	broad.mit.edu	37	chr12	120592987	120592987	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcagtagcggggtgagCagagacccacccaaccgcac	14	13	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120592987	A	A	120592987	1	1	185	0	1	0	0	0	0	0	0	0	6361	725	25	3		3	GCN1L1	12	120592987	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	480800	120592987	13258908	608	148738											
DNAH10	196385	broad.mit.edu	37	chr12	124297768	124297768	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccacctcagaagggggagGaagaggaagttgttataata	14	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124297768	T	T	124297768	4	4	185	1	0	0	0	0	0	1	0	0	4638	1175	41	3	2922	3	DNAH10	12	124297768	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3704781	124297768	9554127	609	148739											
TMEM132D	121256	broad.mit.edu	37	chr12	130185209	130185209	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggcagcaaggaaaacctCtggatgctctcaaggatccc	12	11	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130185209	A	A	130185209	3	1	185	1	0	0	0	0	1	0	0	0	16170	912	32	3	3217	3	TMEM132D	12	130185209	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5887441	130185209	3666686	610	148740											
PIWIL1	9271	broad.mit.edu	37	chr12	130839524	130839524	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaaggcagcgtgaagtGggacgactcattgattacat	13	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130839524	T	T	130839524	2	4	185	1	0	0	0	0	0	0	0	1	12052	1335	47	2		2	PIWIL1	12	130839524	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	654315	130839524	3012371	611	148741											
POLE	5426	broad.mit.edu	37	chr12	133220650	133220650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacacgctattcggagtcCtagacttctggtgcccctag	10	13	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133220650	A	A	133220650	1	1	185	0	1	0	0	0	0	0	0	0	12291	696	24	2		2	POLE	12	133220650	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2381126	133220650	631245	612	148742											
GOLGA3	2802	broad.mit.edu	37	chr12	133357507	133357507	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaactgcctgcacctagatCagattgcaggaggacagata	10	9	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133357507	A	A	133357507	1	1	185	0	1	0	0	0	0	0	0	0	6618	841	29	3		3	GOLGA3	12	133357507	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	136857	133357507	494388	613	148743											
SGCG	6445	broad.mit.edu	37	chr13	23821249	23821249	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacggtgcgagagattgccAgaatcaaagatctgttgctt	11	7	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23821249	T	T	23821249	1	4	185	0	1	0	0	0	0	0	0	0	14316	203	7	5		5	SGCG	13	23821249	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08		23821249	91348629	614	148744											
SACS	26278	broad.mit.edu	37	chr13	23909782	23909782	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacaaatagaaattttttCcatgtgattaagaaacatta	4	5	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23909782	A	A	23909782	4	1	185	1	0	0	0	0	0	1	0	0	13915	864	30	3	5510	3	SACS	13	23909782	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	88533	23909782	91260096	615	148745											
C1QTNF9B	387911	broad.mit.edu	37	chr13	24470882	24470882	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgggtaggtggaaaaCcacacagatgatgagtgaat	15	4	0	5	rs113156509		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24470882	T	T	24470882	1	4	185	0	1	0	0	0	0	0	0	0	1991	522	18	4		4	C1QTNF9B	13	24470882	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	561100	24470882	90698996	616	148746											
ATP12A	479	broad.mit.edu	37	chr13	25264583	25264583	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaccagatccctgcagacatCagggtgctgtcttctcaggg	12	12	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25264583	T	T	25264583	2	4	185	1	0	0	0	0	0	0	0	1	1126	816	29	4		4	ATP12A	13	25264583	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	793701	25264583	89905295	617	148747											
AKAP11	11215	broad.mit.edu	37	chr13	42891710	42891710	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaattacgaatattgacatGgagccatgcacggtagaccc	9	10	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42891710	A	A	42891710	3	1	185	1	0	0	0	0	1	0	0	0	447	1348	47	4	5489	4	AKAP11	13	42891710	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	17627127	42891710	72278168	618	148748											
DACH1	1602	broad.mit.edu	37	chr13	72255996	72255996	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgatgtgagagttctctgGggaggtgacactttgagtcc	14	7	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72255996	C	C	72255996	3	2	185	1	0	0	0	0	1	0	0	0	4253	1232	43	4	1265	4	DACH1	13	72255996	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	29364286	72255996	42913882	619	148749											
UBAC2	337867	broad.mit.edu	37	chr13	99970407	99970407	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcctatttagattgtgcgtCatattcaactgtctcaccat	6	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99970407	T	T	99970407	1	4	185	0	1	0	0	0	0	0	0	0	16961	841	29	4		4	UBAC2	13	99970407	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	27714411	99970407	15199471	620	148750											
ITGBL1	9358	broad.mit.edu	37	chr13	102367973	102367973	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatggaatggaaatgcatGtgaaatctggcttggctcag	14	5	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102367973	T	T	102367973	3	4	185	1	0	0	0	0	1	0	0	0	7972	1377	48	3	1496	3	ITGBL1	13	102367973	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2397566	102367973	12801905	621	148751											
ERCC5	2073	broad.mit.edu	37	chr13	103484058	103484058	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcattcaggtaagcattgAcgtgttttagaaagtgcatt	10	5	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103484058	G	G	103484058	1	3	185	0	1	0	0	0	0	0	0	0	5258	290	10	5		5	ERCC5	13	103484058	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	1116085	103484058	11685820	622	148752											
TEP1	7011	broad.mit.edu	37	chr14	20836575	20836575	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctagcacaaggggtatcaTtattcccgagtggcacatct	9	11	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20836575	G	G	20836575	1	3	185	0	1	0	0	0	0	0	0	0	15881	1508	52	5		5	TEP1	14	20836575	3'UTR	SNP	T	TCGA-64-1678-01A-01W-0928-08		20836575	86512965	623	148753											
TEP1	7011	broad.mit.edu	37	chr14	20859700	20859700	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgggaacaggatactgctCaggatccccagcattctacc	9	13	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20859700	T	T	20859700	1	4	185	0	1	0	0	0	0	0	0	0	15881	841	29	4		4	TEP1	14	20859700	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	23125	20859700	86489840	624	148754											
RPGRIP1	57096	broad.mit.edu	37	chr14	21811444	21811444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgaacattgagactgaGggtcagaattactctggatt	11	6	2	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21811444	T	T	21811444	1	4	185	0	1	0	0	0	0	0	0	0	13660	1015	35	2		2	RPGRIP1	14	21811444	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	951744	21811444	85538096	625	148755											
OR4E2	26686	broad.mit.edu	37	chr14	22133768	22133768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtactgttcactcactaGggcagaccttcttgactatt	10	10	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22133768	T	T	22133768	3	4	185	1	0	0	0	0	1	0	0	0	11154	1000	35	2	474	2	OR4E2	14	22133768	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	322324	22133768	85215772	626	148756											
SLC7A7	9056	broad.mit.edu	37	chr14	23244611	23244611	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgctgttactaaagtttcCcccgcaatctggctttcagt	7	12	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23244611	T	T	23244611	1	4	185	0	1	0	0	0	0	0	0	0	14817	638	22	4		4	SLC7A7	14	23244611	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1110843	23244611	84104929	627	148757											
NGDN	25983	broad.mit.edu	37	chr14	23938921	23938921	+	5'UTR	SNP	G	A	A													ccggaaggggtgggctttgcGaagatggcggcgctggtgag							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23938921	A	A	23938921	1	1	185	0	1	0	0	0	0	0	0	0	10488	1073	37	4		4	NGDN	14	23938921	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	694310	23938921	83410619	628	148758	642	2									
NGDN	25983	broad.mit.edu	37	chr14	23938924	23938924	+	5'UTR	SNP	G	A	A													gaaggggtgggctttgcgaaGatggcggcgctggtgagttt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23938924	A	A	23938924	1	1	185	0	1	0	0	0	0	0	0	0	10488	957	33	4		4	NGDN	14	23938924	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	3	23938924	83410616	629	148759	642	2									
KHNYN	23351	broad.mit.edu	37	chr14	24902242	24902242	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctatgatgacaggtaCttgctcctctcctggcccca	7	16	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24902242	T	T	24902242	1	4	185	0	1	0	0	0	0	0	0	0	8220	580	20	4		4	KHNYN	14	24902242	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	963318	24902242	82447298	630	148760											
CMA1	1215	broad.mit.edu	37	chr14	24974789	24974789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgggtgaagacagcagggGgctttgcatccgaccgtcca	14	11	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24974789	T	T	24974789	3	4	185	1	0	0	0	0	1	0	0	0	3606	1232	43	2	70	2	CMA1	14	24974789	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	72547	24974789	82374751	631	148761											
ARHGAP5	394	broad.mit.edu	37	chr14	32562466	32562466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaacggaaagcttcgatggGaatgcttcgagcatttctat	10	7	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32562466	T	T	32562466	3	4	185	1	0	0	0	0	1	0	0	0	888	1174	41	3	2593	3	ARHGAP5	14	32562466	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7587677	32562466	74787074	632	148762											
KIAA0391	9692	broad.mit.edu	37	chr14	35596743	35596743	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagctgagtccagaagaaTatgaatgtcttaagggaaaa	10	5	2	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35596743	A	A	35596743	3	1	185	1	0	0	0	0	1	0	0	0	8242	1406	49	5	1103	5	KIAA0391	14	35596743	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	3034277	35596743	71752797	633	148763											
FAM179B	23116	broad.mit.edu	37	chr14	45513851	45513851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttaggtgaaaaatttacGttctggagtttctcgtgctg	10	5	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45513851	T	T	45513851	3	4	185	1	0	0	0	0	1	0	0	0	5551	1145	40	3	3982	3	FAM179B	14	45513851	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	9917108	45513851	61835689	634	148764											
FANCM	57697	broad.mit.edu	37	chr14	45669020	45669020	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttaggtaatattaaatTttataaaagccaaaagtcct	4	5	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45669020	G	G	45669020	1	3	185	0	1	0	0	0	0	0	0	0	5728	1856	64	5		5	FANCM	14	45669020	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	155169	45669020	61680520	635	148765											
FANCM	57697	broad.mit.edu	37	chr14	45669039	45669039	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttataaaagccaaaagtcCtagtgtaatgattttgtctc	6	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45669039	T	T	45669039	1	4	185	0	1	0	0	0	0	0	0	0	5728	696	24	4		4	FANCM	14	45669039	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	19	45669039	61680501	636	148766											
RPL10L	140801	broad.mit.edu	37	chr14	47120255	47120255	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttattagtaagcataagtCagaccagcatggcccaagga	9	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47120255	A	A	47120255	1	1	185	0	1	0	0	0	0	0	0	0	13667	841	29	3		3	RPL10L	14	47120255	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	1451216	47120255	60229285	637	148767											
TMX1	81542	broad.mit.edu	37	chr14	51716377	51716377	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagctgtggcatatattctAcattcagatttcttacaatg	6	7	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51716377	G	G	51716377	1	3	185	0	1	0	0	0	0	0	0	0	16389	406	14	5		5	TMX1	14	51716377	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	4596122	51716377	55633163	638	148768											
BMP4	652	broad.mit.edu	37	chr14	54417449	54417449	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcataaatgtttatacgGtggaagcccctttcccaatc	6	12	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54417449	A	A	54417449	2	1	185	1	0	0	0	0	0	0	0	1	1468	1252	44	4		4	BMP4	14	54417449	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	2701072	54417449	52932091	639	148769											
KTN1	3895	broad.mit.edu	37	chr14	56122831	56122831	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggagagtgatctttctaGcaaaacacagctgttacagg	12	7	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56122831	C	C	56122831	3	2	185	1	0	0	0	0	1	0	0	0	8657	971	34	4	2983	4	KTN1	14	56122831	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1705382	56122831	51226709	640	148770											
C14orf37	145407	broad.mit.edu	37	chr14	58471400	58471400	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttctgctccaaaAtaaaaattagaatagtagca	4	5	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58471400	T	T	58471400	1	4	185	0	1	0	0	0	0	0	0	0	1784	116	4	5		5	C14orf37	14	58471400	3'UTR	SNP	A	TCGA-64-1678-01A-01W-0928-08	2348569	58471400	48878140	641	148771											
SYNE2	23224	broad.mit.edu	37	chr14	64685272	64685273	+	Intron	DEL	GG	-	-													cgtccagagaggcagagtatGgtatttaagtccttgctcaa							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64685273	-	-	64685272	6	5	185	0	1	1	0	1	0	0	0	0	15565	1363	47	0		0	SYNE2	14	64685272	Intron	DEL	GG	TCGA-64-1678-01A-01W-0928-08	6213872	64685272	42664268	642	148772											
PLEKHH1	57475	broad.mit.edu	37	chr14	68029127	68029127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccccttcaacctcatctggGaagagagagccctccccacc	8	18	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68029127	T	T	68029127	3	4	185	1	0	0	0	0	1	0	0	0	12171	1174	41	3	801	3	PLEKHH1	14	68029127	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3343855	68029127	39320413	643	148773											
ESRRB	2103	broad.mit.edu	37	chr14	76964496	76964496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctggaccccaagatgGcccccacaccaggcagcact	9	19	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76964496	T	T	76964496	1	4	185	0	1	0	0	0	0	0	0	0	5303	1218	42	3		3	ESRRB	14	76964496	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	8935369	76964496	30385044	644	148774											
C14orf145	145508	broad.mit.edu	37	chr14	81371128	81371128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcataaggaaatactgCacacaaattacagaatggta	8	6	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81371128	A	A	81371128	1	1	185	0	1	0	0	0	0	0	0	0	1762	725	25	3		3	C14orf145	14	81371128	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4406632	81371128	25978412	645	148775											
STON2	85439	broad.mit.edu	37	chr14	81799335	81799335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcgacaccaactttggcCtttgcagtccccctgacttt	7	14	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81799335	A	A	81799335	1	1	185	0	1	0	0	0	0	0	0	0	15436	696	24	2		2	STON2	14	81799335	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	428207	81799335	25550205	646	148776											
STON2	85439	broad.mit.edu	37	chr14	81837395	81837395	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcattgatgagctgcagatCtgtatacgaacatccaaagc	9	9	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81837395	G	G	81837395	3	3	185	1	0	0	0	0	1	0	0	0	15436	913	32	4	2219	4	STON2	14	81837395	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	38060	81837395	25512145	647	148777											
SLC24A4	123041	broad.mit.edu	37	chr14	92908403	92908403	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtacccccacgtcacacCctgagggtctgtggtcactt	9	16	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92908403	T	T	92908403	1	4	185	0	1	0	0	0	0	0	0	0	14582	638	22	4		4	SLC24A4	14	92908403	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	11071008	92908403	14441137	648	148778											
SLC24A4	123041	broad.mit.edu	37	chr14	92959901	92959901	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctctacgccatcttcttgTgcttctccataatgatagag	6	11	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92959901	A	A	92959901	3	1	185	1	0	0	0	0	1	0	0	0	14582	1696	59	5	1813	5	SLC24A4	14	92959901	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	51498	92959901	14389639	649	148779											
UBR7	55148	broad.mit.edu	37	chr14	93685532	93685532	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatggtagtttaaaaaacaTgcttcaaaacttaattttat	4	5	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93685532	A	A	93685532	1	1	185	0	1	0	0	0	0	0	0	0	17032	1479	51	5		5	UBR7	14	93685532	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	725631	93685532	13664008	650	148780											
DICER1	23405	broad.mit.edu	37	chr14	95557026	95557026	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatccaaacagcttgaaTtagaagtcagaagtatttat	6	5	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95557026	C	C	95557026	1	2	185	0	1	0	0	0	0	0	0	0	4561	1508	52	5		5	DICER1	14	95557026	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1871494	95557026	11792514	651	148781											
C14orf177	283598	broad.mit.edu	37	chr14	99182659	99182659	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaagggaaatgcccaagttCtcagcacctgcagagcctaa	10	11	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99182659	T	T	99182659	3	4	185	1	0	0	0	0	1	0	0	0	1773	913	32	4	133	4	C14orf177	14	99182659	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3625633	99182659	8166881	652	148782											
C14orf177	283598	broad.mit.edu	37	chr14	99182700	99182700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacataacaagcagcatgccCtgacgctcaccaaggccagg	10	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99182700	A	A	99182700	3	1	185	1	0	0	0	0	1	0	0	0	1773	680	24	2	174	2	C14orf177	14	99182700	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	41	99182700	8166840	653	148783											
CDC42BPB	9578	broad.mit.edu	37	chr14	103508273	103508273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaccggtcatgcccatccCaaacgtctgtaagaaggaga	11	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103508273	A	A	103508273	1	1	185	0	1	0	0	0	0	0	0	0	3103	609	21	2		2	CDC42BPB	14	103508273	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4325573	103508273	3841267	654	148784											
GABRB3	2562	broad.mit.edu	37	chr15	27184360	27184360	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcacactccctgaccaCagctcccgacctcagctcct	6	21	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27184360	T	T	27184360	1	4	185	0	1	0	0	0	0	0	0	0	6228	493	17	4		4	GABRB3	15	27184360	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08		27184360	75347032	655	148785											
GABRG3	2567	broad.mit.edu	37	chr15	27453301	27453301	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagctgagccaggaacccatCattggggctgatctcacagt	11	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27453301	A	A	27453301	1	1	185	0	1	0	0	0	0	0	0	0	6233	841	29	3		3	GABRG3	15	27453301	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	268941	27453301	75078091	656	148786											
OCA2	4948	broad.mit.edu	37	chr15	28141594	28141594	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatatgagagaatcccatcTaggagaagaagcccaagaaa	9	8	1	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28141594	C	C	28141594	1	2	185	0	1	0	0	0	0	0	0	0	10910	1537	53	5		5	OCA2	15	28141594	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	688293	28141594	74389798	657	148787											
ACTC1	70	broad.mit.edu	37	chr15	35085394	35085394	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatctgattcacagcaaggtCggtgacttgggaatgtgatt	13	6	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35085394	A	A	35085394	1	1	185	0	1	0	0	0	0	0	0	0	195	899	31	3		3	ACTC1	15	35085394	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	6943800	35085394	67445998	658	148788											
MAPKBP1	23005	broad.mit.edu	37	chr15	42092080	42092080	+	Frame_Shift_Del	DEL	C	-	-													ggcagaggacttgcctgtgaCccccgatcaggtttagttgc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42092080	-	-	42092080	7	5	185	1	0	1	0	1	0	0	0	0	9384	506	18	0	180	0	MAPKBP1	15	42092080	Frame_Shift_Del	DEL	C	TCGA-64-1678-01A-01W-0928-08	7006686	42092080	60439312	659	148789											
SLC12A1	6557	broad.mit.edu	37	chr15	48500154	48500154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccaaagtggagaaactGctaaaacagatgccagtttt	8	9	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48500154	T	T	48500154	3	4	185	1	0	0	0	0	1	0	0	0	14495	1319	46	3	240	3	SLC12A1	15	48500154	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	6408074	48500154	54031238	660	148790											
FBN1	2200	broad.mit.edu	37	chr15	48796170	48796170	+	Intron	SNP	C	T	T													agcatctgtcatcacactgtCacttcaaacagatgagaacc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48796170	T	T	48796170	1	4	185	0	1	0	0	0	0	0	0	0	5759	841	29	4		4	FBN1	15	48796170	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	296016	48796170	53735222	661	148791	643	2									
FBN1	2200	broad.mit.edu	37	chr15	48796175	48796175	+	Intron	SNP	C	T	T													ctgtcatcacactgtcacttCaaacagatgagaacccccca							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48796175	T	T	48796175	1	4	185	0	1	0	0	0	0	0	0	0	5759	841	29	4		4	FBN1	15	48796175	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5	48796175	53735217	662	148792	643	2									
FBN1	2200	broad.mit.edu	37	chr15	48888462	48888462	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcatgtctttacgtaaatGattttaaaaaccattacctc	4	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48888462	A	A	48888462	1	1	185	0	1	0	0	0	0	0	0	0	5759	1305	45	4		4	FBN1	15	48888462	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	92287	48888462	53642930	663	148793											
DMXL2	23312	broad.mit.edu	37	chr15	51829946	51829946	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctcagattctctatcCagggataaatctgaaccaga	7	12	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51829946	A	A	51829946	2	1	185	1	0	0	0	0	0	0	0	1	4635	581	21	2		2	DMXL2	15	51829946	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	2941484	51829946	50701446	664	148794											
KIAA1370	56204	broad.mit.edu	37	chr15	52902041	52902041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattaaagggttagtctcaCcagctgactgccagaaactc	8	11	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52902041	A	A	52902041	3	1	185	1	0	0	0	0	1	0	0	0	8296	507	18	3	2192	3	KIAA1370	15	52902041	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1072095	52902041	49629351	665	148795											
MAP2K1	5604	broad.mit.edu	37	chr15	66727455	66727455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcctttcttacccagaaGcagaaggtgggagaactgaa	13	8	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66727455	T	T	66727455	3	4	185	1	0	0	0	0	1	0	0	0	9328	962	34	3	177	3	MAP2K1	15	66727455	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	13825414	66727455	35803937	666	148796											
ITGA11	22801	broad.mit.edu	37	chr15	68596108	68596108	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcccctgccagggccctcAccttccacagtgccaggacc	8	21	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68596108	T	T	68596108	5	4	185	1	0	0	0	0	0	0	1	0	7944	173	6	5	77	5	ITGA11	15	68596108	Splice_Site	SNP	A	TCGA-64-1678-01A-01W-0928-08	1868653	68596108	33935284	667	148797											
ITGA11	22801	broad.mit.edu	37	chr15	68650679	68650679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctggccctactacctctGccctcttacctacacctcct	5	19	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68650679	T	T	68650679	1	4	185	0	1	0	0	0	0	0	0	0	7944	1334	46	3		3	ITGA11	15	68650679	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	54571	68650679	33880713	668	148798											
NOX5	79400	broad.mit.edu	37	chr15	69335109	69335109	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggttctaagaggctgtcgagGagtgtgacaatgagaaagag	16	4	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69335109	C	C	69335109	3	2	185	1	0	0	0	0	1	0	0	0	10654	1165	41	4	1682	4	NOX5	15	69335109	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	684430	69335109	33196283	669	148799											
TLE3	7090	broad.mit.edu	37	chr15	70346774	70346774	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgctccctcctgccggctCacctgaccagggtctggttg	11	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346774	A	A	70346774	1	1	185	0	1	0	0	0	0	0	0	0	16063	841	29	3		3	TLE3	15	70346774	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1011665	70346774	32184618	670	148800											
LRRC49	54839	broad.mit.edu	37	chr15	71302062	71302062	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtttacatatttacctgggGaatgattagtgaagctttaa	9	4	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71302062	A	A	71302062	1	1	185	0	1	0	0	0	0	0	0	0	9093	1189	41	4		4	LRRC49	15	71302062	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	955288	71302062	31229330	671	148801											
MYO9A	4649	broad.mit.edu	37	chr15	72197314	72197314	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacaaaatatggttctgcttGaccaagtgtttccattagct	7	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72197314	A	A	72197314	4	1	185	1	0	0	0	0	0	1	0	0	10178	1299	45	4	5019	4	MYO9A	15	72197314	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	895252	72197314	30334078	672	148802											
CYP11A1	1583	broad.mit.edu	37	chr15	74636355	74636355	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcagggagaggaagaggctGaggagccatttctgacgggg	19	6	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74636355	C	C	74636355	1	2	185	0	1	0	0	0	0	0	0	0	4177	1305	45	4		4	CYP11A1	15	74636355	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2439041	74636355	27895037	673	148803											
SCAMP2	10066	broad.mit.edu	37	chr15	75144322	75144322	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaactctaaggcagctcagGgtgaatgctgggaggccctc	13	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75144322	A	A	75144322	1	1	185	0	1	0	0	0	0	0	0	0	13983	1247	43	4		4	SCAMP2	15	75144322	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	507967	75144322	27387070	674	148804											
SCAPER	49855	broad.mit.edu	37	chr15	77092562	77092564	+	Intron	DEL	TAG	-	-													aaataatttaatgcaagtctTagtagttttttcttagttca							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77092564	-	-	77092562	6	5	185	0	1	1	0	1	0	0	0	0	13990	1769	61	0		0	SCAPER	15	77092562	Intron	DEL	TAG	TCGA-64-1678-01A-01W-0928-08	1948240	77092562	25438830	675	148805											
FAM108C1	58489	broad.mit.edu	37	chr15	81042093	81042093	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtgtttatatctgatGctcccataaatatctgtgta	7	7	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81042093	A	A	81042093	1	1	185	0	1	0	0	0	0	0	0	0	5439	1334	46	4		4	FAM108C1	15	81042093	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3949531	81042093	21489299	676	148806											
C15orf26	161502	broad.mit.edu	37	chr15	81427722	81427722	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactttttttttttttattAcactttaagttttagggtac	4	4	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81427722	T	T	81427722	1	4	185	0	1	0	0	0	0	0	0	0	1800	406	14	5		5	C15orf26	15	81427722	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	385629	81427722	21103670	677	148807											
AP3B2	8120	broad.mit.edu	37	chr15	83328191	83328191	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagagggagagaggacacCctgaatgctatctggcatga	13	9	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83328191	G	G	83328191	1	3	185	0	1	0	0	0	0	0	0	0	747	638	22	4		4	AP3B2	15	83328191	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	1900469	83328191	19203201	678	148808											
AP3B2	8120	broad.mit.edu	37	chr15	83349659	83349659	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatgaccacctggcccCactcctccacgtcgatcagc	8	17	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83349659	T	T	83349659	4	4	185	1	0	0	0	0	0	1	0	0	747	595	21	4	2551	4	AP3B2	15	83349659	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	21468	83349659	19181733	679	148809											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84651595	84651595	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctgcaggaagcaccaactCctgggagttgaagaataagc	11	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84651595	A	A	84651595	3	1	185	1	0	0	0	0	1	0	0	0	276	855	30	3	3293	3	ADAMTSL3	15	84651595	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1301936	84651595	17879797	680	148810											
AKAP13	11214	broad.mit.edu	37	chr15	85958713	85958713	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggcagaaaaactcagactGtgtgcaactttacagatggt	10	7	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85958713	C	C	85958713	1	2	185	0	1	0	0	0	0	0	0	0	449	1392	48	4		4	AKAP13	15	85958713	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1307118	85958713	16572679	681	148811											
NTRK3	4916	broad.mit.edu	37	chr15	88703427	88703427	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacccagaggaaggaggggcGccccagccatggtcaagggg	17	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88703427	A	A	88703427	1	1	185	0	1	0	0	0	0	0	0	0	10803	1102	38	4		4	NTRK3	15	88703427	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2744714	88703427	13827965	682	148812											
ACAN	176	broad.mit.edu	37	chr15	89391294	89391294	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagccacattctcacatttcGggccctagatgggcaggggg	13	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89391294	C	C	89391294	1	2	185	0	1	0	0	0	0	0	0	0	117	1131	39	4		4	ACAN	15	89391294	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	687867	89391294	13140098	683	148813											
WDR93	56964	broad.mit.edu	37	chr15	90245192	90245192	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgtttgaccagtcttGggaaattattgaagagagaa	10	6	2	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90245192	T	T	90245192	3	4	185	1	0	0	0	0	1	0	0	0	17467	1357	47	2	217	2	WDR93	15	90245192	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	853898	90245192	12286200	684	148814											
ARRDC4	91947	broad.mit.edu	37	chr15	98512352	98512352	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttttgttttctttttaGgagaagctattccaatctat	7	6	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98512352	T	T	98512352	5	4	185	1	0	0	0	0	0	0	1	0	989	1014	35	2	643	2	ARRDC4	15	98512352	Splice_Site	SNP	G	TCGA-64-1678-01A-01W-0928-08	8267160	98512352	4019040	685	148815											
LRRK1	79705	broad.mit.edu	37	chr15	101597252	101597252	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctgggacactaagccagaGaaggtacttggggacacaga	14	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101597252	A	A	101597252	2	1	185	1	0	0	0	0	0	0	0	1	9119	933	33	4		4	LRRK1	15	101597252	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	3084900	101597252	934140	686	148816											
OR4F6	390648	broad.mit.edu	37	chr15	102346241	102346241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcttctttatccatgcaGttgggggaactgagatggtg	13	6	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102346241	T	T	102346241	3	4	185	1	0	0	0	0	1	0	0	0	11160	1029	36	3	321	3	OR4F6	15	102346241	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	748989	102346241	185151	687	148817											
SRRM2	23524	broad.mit.edu	37	chr16	2815970	2815970	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcgggttactcggcggcGgaggggaggctctggttatc	19	9	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2815970	T	T	2815970	3	4	185	1	0	0	0	0	1	0	0	0	15287	1116	39	1	5479	1	SRRM2	16	2815970	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08		2815970	87538783	688	148818											
ZG16B	124220	broad.mit.edu	37	chr16	2881957	2881957	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtacaccagcaaggaccgcTatttctattttgggaagctt	9	9	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2881957	A	A	2881957	3	1	185	1	0	0	0	0	1	0	0	0	17798	1522	53	5	438	5	ZG16B	16	2881957	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	65987	2881957	87472796	689	148819											
ZNF213	7760	broad.mit.edu	37	chr16	3188963	3188963	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcctgagccgggtcttctCaccccattccagggacctgt	11	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3188963	T	T	3188963	1	4	185	0	1	0	0	0	0	0	0	0	17895	841	29	4		4	ZNF213	16	3188963	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	307006	3188963	87165790	690	148820											
UBN1	29855	broad.mit.edu	37	chr16	4924652	4924652	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacaggctctggcactgggGcagtcctctcaggagaaaaa	13	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4924652	A	A	4924652	2	1	185	1	0	0	0	0	0	0	0	1	17018	1190	42	4		4	UBN1	16	4924652	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	1735689	4924652	85430101	691	148821											
GRIN2A	2903	broad.mit.edu	37	chr16	9943739	9943739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgagatggttgtcatccGgctcacagtcggagaaggac	14	9	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9943739	T	T	9943739	3	4	185	1	0	0	0	0	1	0	0	0	6845	1116	39	1	3228	1	GRIN2A	16	9943739	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5019087	9943739	80411014	692	148822											
GRIN2A	2903	broad.mit.edu	37	chr16	10273964	10273964	+	Frame_Shift_Del	DEL	T	-	-													cggcctcctggtccgtgtcgTccccaaacacgaggccgtgg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10273964	-	-	10273964	7	5	185	1	0	1	0	1	0	0	0	0	6845	1667	58	0	4137	0	GRIN2A	16	10273964	Frame_Shift_Del	DEL	T	TCGA-64-1678-01A-01W-0928-08	330225	10273964	80080789	693	148823											
CLEC16A	23274	broad.mit.edu	37	chr16	11096921	11096921	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacctgttgccttcgttggActttcctaggccaagcccag	9	14	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11096921	T	T	11096921	1	4	185	0	1	0	0	0	0	0	0	0	3532	290	10	5		5	CLEC16A	16	11096921	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	822957	11096921	79257832	694	148824											
CLEC16A	23274	broad.mit.edu	37	chr16	11219945	11219945	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacgaccaggggcgccgGggcagcagcgaccccacagt	14	15	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11219945	T	T	11219945	2	4	185	1	0	0	0	0	0	0	0	1	3532	1219	43	2		2	CLEC16A	16	11219945	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	123024	11219945	79134808	695	148825											
XYLT1	64131	broad.mit.edu	37	chr16	17221646	17221646	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agattggtagcatgatgcttGatcagaaagccctggaagcg	13	7	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17221646	A	A	17221646	2	1	185	1	0	0	0	0	0	0	0	1	17590	1280	45	4		4	XYLT1	16	17221646	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	6001701	17221646	73133107	696	148826											
XYLT1	64131	broad.mit.edu	37	chr16	17221699	17221699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagaggtgcacagatgctgGgtggcccattgggtagtatc	16	7	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17221699	T	T	17221699	3	4	185	1	0	0	0	0	1	0	0	0	17590	1232	43	2	844	2	XYLT1	16	17221699	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	53	17221699	73133054	697	148827											
XYLT1	64131	broad.mit.edu	37	chr16	17228362	17228362	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccatccgtgtgcagggaCgtctcggcccgtcgaagacc	12	16	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17228362	A	A	17228362	2	1	185	1	0	0	0	0	0	0	0	1	17590	523	19	3		3	XYLT1	16	17228362	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	6663	17228362	73126391	698	148828											
POLR3E	55718	broad.mit.edu	37	chr16	22325425	22325425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcttcacaggatgaggcGgaagacgatgttaagcagat	13	7	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22325425	T	T	22325425	2	4	185	1	0	0	0	0	0	0	0	1	12327	1103	39	1		1	POLR3E	16	22325425	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	5097063	22325425	68029328	699	148829											
PALB2	79728	broad.mit.edu	37	chr16	23647873	23647873	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaggaggaatgtgttcaaGgtgttgactacttctactat	10	5	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23647873	A	A	23647873	1	1	185	0	1	0	0	0	0	0	0	0	11500	1015	35	4		4	PALB2	16	23647873	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1322448	23647873	66706880	700	148830											
XPO6	23214	broad.mit.edu	37	chr16	28124184	28124184	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcttccttgggtctcagtCacacagccctggggaccccg	11	16	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28124184	A	A	28124184	1	1	185	0	1	0	0	0	0	0	0	0	17575	841	29	3		3	XPO6	16	28124184	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4476311	28124184	62230569	701	148831											
CLN3	1201	broad.mit.edu	37	chr16	28498827	28498827	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcaaccaggacgaagcttCcagcagcacaaatcccactg	9	14	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28498827	T	T	28498827	3	4	185	1	0	0	0	0	1	0	0	0	3575	855	30	4	946	4	CLN3	16	28498827	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	374643	28498827	61855926	702	148832											
ATXN2L	11273	broad.mit.edu	37	chr16	28844674	28844674	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatgagggccctgttgctGagtgagtggagcggggtggg	21	5	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28844674	C	C	28844674	3	2	185	1	0	0	0	0	1	0	0	0	1216	1304	45	4	2008	4	ATXN2L	16	28844674	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	345847	28844674	61510079	703	148833											
ITGAM	3684	broad.mit.edu	37	chr16	31276830	31276830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgcagggtgagtcactGccccgccgggctgggactgg	17	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31276830	T	T	31276830	1	4	185	0	1	0	0	0	0	0	0	0	7957	1334	46	3		3	ITGAM	16	31276830	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2432156	31276830	59077923	704	148834											
SALL1	6299	broad.mit.edu	37	chr16	51172949	51172949	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccaaggttggaactgggctCaaagagctgggatggcagat	16	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51172949	T	T	51172949	3	4	185	1	0	0	0	0	1	0	0	0	13921	835	29	4	798	4	SALL1	16	51172949	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	19896119	51172949	39181804	705	148835											
CHD9	80205	broad.mit.edu	37	chr16	53260431	53260431	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaattgtttgtggtaagcAtatttgggattatgactgca	10	4	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53260431	T	T	53260431	1	4	185	0	1	0	0	0	0	0	0	0	3363	232	8	5		5	CHD9	16	53260431	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	2087482	53260431	37094322	706	148836											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53726179	53726179	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgcagctgctcaatcatttCttccatttccacatctcgtc	4	14	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53726179	G	G	53726179	3	3	185	1	0	0	0	0	1	0	0	0	13661	922	32	4	3715	4	RPGRIP1L	16	53726179	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	465748	53726179	36628574	707	148837											
CDH8	1006	broad.mit.edu	37	chr16	61687618	61687618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtctgagtctgatgtgGtggactccaaggagctgagg	16	7	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61687618	T	T	61687618	3	4	185	1	0	0	0	0	1	0	0	0	3146	1261	44	3	109	3	CDH8	16	61687618	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7961439	61687618	28667135	708	148838											
SF3B3	23450	broad.mit.edu	37	chr16	70590033	70590033	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtgaattggagcatctAgacccatccctctgtagttt	11	9	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70590033	G	G	70590033	1	3	185	0	1	0	0	0	0	0	0	0	14265	435	15	5		5	SF3B3	16	70590033	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	8902415	70590033	19764720	709	148839											
MLKL	197259	broad.mit.edu	37	chr16	74708939	74708939	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaagggcagtcttcacCcagtggctcctgctgccgct	11	15	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74708939	A	A	74708939	3	1	185	1	0	0	0	0	1	0	0	0	9712	623	22	2	123	2	MLKL	16	74708939	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	4118906	74708939	15645814	710	148840											
PLCG2	5336	broad.mit.edu	37	chr16	81957157	81957157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgagctgagcttctgccGtggtgccctcatccacaatg	11	13	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81957157	T	T	81957157	3	4	185	1	0	0	0	0	1	0	0	0	12131	1145	40	3	2457	3	PLCG2	16	81957157	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7248218	81957157	8397596	711	148841											
CRISPLD2	83716	broad.mit.edu	37	chr16	84911138	84911138	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaggcgggcctgatctgtcAtcttttctatggaagatgtt	11	7	4	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84911138	T	T	84911138	1	4	185	0	1	0	0	0	0	0	0	0	3915	232	8	5		5	CRISPLD2	16	84911138	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	2953981	84911138	5443615	712	148842											
MTHFSD	64779	broad.mit.edu	37	chr16	86582165	86582165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagtcgtggtgttggaaCcaacaatgtttttttgctct	9	8	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86582165	A	A	86582165	3	1	185	1	0	0	0	0	1	0	0	0	10027	507	18	3	915	3	MTHFSD	16	86582165	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1671027	86582165	3772588	713	148843											
MAP1LC3B	81631	broad.mit.edu	37	chr16	87432486	87432486	+	Intron	SNP	C	T	T													ccaaaatcccggtaggtagtCtcaggcctcggtttcagtca							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87432486	T	T	87432486	1	4	185	0	1	0	0	0	0	0	0	0	9323	928	32	4		4	MAP1LC3B	16	87432486	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	850321	87432486	2922267	714	148844	644	2									
MAP1LC3B	81631	broad.mit.edu	37	chr16	87432488	87432488	+	Intron	SNP	C	T	T													aaaatcccggtaggtagtctCaggcctcggtttcagtcatg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87432488	T	T	87432488	1	4	185	0	1	0	0	0	0	0	0	0	9323	841	29	4		4	MAP1LC3B	16	87432488	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2	87432488	2922265	715	148845	644	2									
FANCA	2175	broad.mit.edu	37	chr16	89849560	89849560	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttagtctgggaactgcctggGactccagggaggccacaatt	13	10	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89849560	A	A	89849560	1	1	185	0	1	0	0	0	0	0	0	0	5719	1189	41	4		4	FANCA	16	89849560	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2417072	89849560	505193	716	148846											
PRDM7	11105	broad.mit.edu	37	chr16	90128232	90128233	+	Intron	DNP	CC	TT	TT													cacagagctaaccatgttatCcctacctatatcctaacatg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	90128233	TT	TT	90128232	1	4	185	0	1	0	0	0	0	0	0	0	12567	870	30	4		4	PRDM7	16	90128232	Intron	DNP	CC	TCGA-64-1678-01A-01W-0928-08	278672	90128232	226521	717	148847											
SHPK	23729	broad.mit.edu	37	chr17	3514090	3514090	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaatgcctcggcacagagCccgggtcacgtgccccaggg	13	15	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3514090	A	A	3514090	3	1	185	1	0	0	0	0	1	0	0	0	14403	739	26	3	239	3	SHPK	17	3514090	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08		3514090	77681120	718	148848											
C17orf81	23587	broad.mit.edu	37	chr17	7160226	7160226	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctgggcttgctacatgaaGagcttcatggaccaggccct	12	11	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7160226	A	A	7160226	3	1	185	1	0	0	0	0	1	0	0	0	1903	943	33	4	526	4	C17orf81	17	7160226	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3646136	7160226	74034984	719	148849											
ACAP1	9744	broad.mit.edu	37	chr17	7240033	7240033	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctccagggcccgctggCcccacagcaggcaagctgag	14	17	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7240033	A	A	7240033	1	1	185	0	1	0	0	0	0	0	0	0	118	754	26	3		3	ACAP1	17	7240033	5'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	79807	7240033	73955177	720	148850											
TP53	7157	broad.mit.edu	37	chr17	7578177	7578177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccagttgcaaaccagacCtcaggcggctcatagggcac	10	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578177	A	A	7578177	3	1	185	1	0	0	0	0	1	0	0	0	16505	695	24	2	622	2	TP53	17	7578177	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	338144	7578177	73617033	721	148851											
STX8	9482	broad.mit.edu	37	chr17	9471808	9471808	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcaccaaagtcgtaaaaaGagaaaatgtttaaggttctt	8	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9471808	A	A	9471808	1	1	185	0	1	0	0	0	0	0	0	0	15469	957	33	4		4	STX8	17	9471808	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1893631	9471808	71723402	722	148852											
WDR16	146845	broad.mit.edu	37	chr17	9546400	9546400	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaagtgactcacgttgGggtgggacacagtggcaaca	17	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9546400	A	A	9546400	3	1	185	1	0	0	0	0	1	0	0	0	17403	1232	43	4	1802	4	WDR16	17	9546400	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	74592	9546400	71648810	723	148853											
MYH13	8735	broad.mit.edu	37	chr17	10257933	10257933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcccattagctcactaacGtgtctctcagttcataaact	4	12	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10257933	A	A	10257933	1	1	185	0	1	0	0	0	0	0	0	0	10126	1160	40	4		4	MYH13	17	10257933	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	711533	10257933	70937277	724	148854											
MYH8	4626	broad.mit.edu	37	chr17	10293753	10293753	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttcttcagcctcttgatAgcatcaggcaggtgtgttta	9	10	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10293753	G	G	10293753	1	3	185	0	1	0	0	0	0	0	0	0	10135	435	15	5		5	MYH8	17	10293753	3'UTR	SNP	A	TCGA-64-1678-01A-01W-0928-08	35820	10293753	70901457	725	148855											
DNAH9	1770	broad.mit.edu	37	chr17	11522855	11522855	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtgatactaatctgttTgtataccaggcctctaatta	6	9	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11522855	C	C	11522855	1	2	185	0	1	0	0	0	0	0	0	0	4648	1827	63	5		5	DNAH9	17	11522855	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1229102	11522855	69672355	726	148856											
TRPV2	51393	broad.mit.edu	37	chr17	16331603	16331603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcgggagagcaggtttcaCagccctctgtcctcccttcc	10	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16331603	A	A	16331603	1	1	185	0	1	0	0	0	0	0	0	0	16721	493	17	3		3	TRPV2	17	16331603	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4808748	16331603	64863607	727	148857											
ACCN1	40	broad.mit.edu	37	chr17	31352471	31352471	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctccagccctcctccacctCccctaggctcaatggagcag	7	19	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31352471	T	T	31352471	1	4	185	0	1	0	0	0	0	0	0	0	128	870	30	4		4	ACCN1	17	31352471	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	15020868	31352471	49842739	728	148858											
SLFN13	146857	broad.mit.edu	37	chr17	33767735	33767735	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatgctcctttccaggcctGagaatcgccggacactgtcc	9	15	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33767735	A	A	33767735	3	1	185	1	0	0	0	0	1	0	0	0	14850	1294	45	4	124	4	SLFN13	17	33767735	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2415264	33767735	47427475	729	148859											
ZPBP2	124626	broad.mit.edu	37	chr17	38033026	38033026	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggagctaaatcttgcccAcaaacttcaaacaaaaatca	4	10	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38033026	T	T	38033026	2	4	185	1	0	0	0	0	0	0	0	1	18349	146	6	5		5	ZPBP2	17	38033026	Silent	SNP	A	TCGA-64-1678-01A-01W-0928-08	4265291	38033026	43162184	730	148860											
KRTAP4-4	84616	broad.mit.edu	37	chr17	39316831	39316831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggacacacagcagctgGggcggcagcaggtggtcctg	17	11	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39316831	T	T	39316831	3	4	185	1	0	0	0	0	1	0	0	0	8625	1232	43	2	391	2	KRTAP4-4	17	39316831	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1283805	39316831	41878379	731	148861											
KRT9	3857	broad.mit.edu	37	chr17	39726321	39726321	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggaaccaggccctaccagGacctccagagcactgaggtt	12	13	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39726321	A	A	39726321	1	1	185	0	1	0	0	0	0	0	0	0	8572	1189	41	4		4	KRT9	17	39726321	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	409490	39726321	41468889	732	148862											
STAT3	6774	broad.mit.edu	37	chr17	40483494	40483494	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agataggagtacttacttgtCaatgcacactttaattttaa	6	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40483494	T	T	40483494	3	4	185	1	0	0	0	0	1	0	0	0	15384	826	29	4	1263	4	STAT3	17	40483494	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	757173	40483494	40711716	733	148863											
MLX	6945	broad.mit.edu	37	chr17	40720591	40720592	+	Intron	INS	-	C	C													acacaggtaggcagtaacatINScccccccgacctcggggggc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40720592	C	C	40720591	6	5	185	0	1	1	1	0	0	0	0	0	9728	1450	50	0		0	MLX	17	40720591	Intron	INS	-	TCGA-64-1678-01A-01W-0928-08	237097	40720591	40474619	734	148864											
MYL4	4635	broad.mit.edu	37	chr17	45299121	45299121	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttcccgcaacaaggagcaGggcacctatgaggacttcgt	11	11	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45299121	A	A	45299121	2	1	185	1	0	0	0	0	0	0	0	1	10143	991	35	4		4	MYL4	17	45299121	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	4578530	45299121	35896089	735	148865											
ITGB3	3690	broad.mit.edu	37	chr17	45351647	45351647	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacctgtatttggtagacgTctgtggtatggttagggtgt	14	4	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45351647	A	A	45351647	1	1	185	0	1	0	0	0	0	0	0	0	7965	1682	58	5		5	ITGB3	17	45351647	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	52526	45351647	35843563	736	148866											
OR4D2	124538	broad.mit.edu	37	chr17	56247349	56247349	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactttttgggaggtgccatGgtcttcttcctctcagtgat	10	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56247349	C	C	56247349	3	2	185	1	0	0	0	0	1	0	0	0	11150	1348	47	4	335	4	OR4D2	17	56247349	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	10895702	56247349	24947861	737	148867											
EPX	8288	broad.mit.edu	37	chr17	56270716	56270716	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctctccagccctcactcCtcctctcctgggcagcatca	5	21	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56270716	T	T	56270716	1	4	185	0	1	0	0	0	0	0	0	0	5242	696	24	4		4	EPX	17	56270716	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	23367	56270716	24924494	738	148868											
BCAS3	54828	broad.mit.edu	37	chr17	59161869	59161869	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccgtcagcatgccagggtCatcccgtccagtctctgatc	9	17	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59161869	T	T	59161869	3	4	185	1	0	0	0	0	1	0	0	0	1357	838	29	4	2500	4	BCAS3	17	59161869	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2891153	59161869	22033341	739	148869											
LRRC37A3	374819	broad.mit.edu	37	chr17	62856639	62856639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcagctcccttggggctgGacttccgagccttttttctt	9	12	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62856639	T	T	62856639	3	4	185	1	0	0	0	0	1	0	0	0	9080	1174	41	3	1295	3	LRRC37A3	17	62856639	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3694770	62856639	18338571	740	148870											
RGS9	8787	broad.mit.edu	37	chr17	63157135	63157135	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatatgcgcccacattcatAtgcaatccatccagccagcc	5	16	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63157135	G	G	63157135	1	3	185	0	1	0	0	0	0	0	0	0	13422	464	16	5		5	RGS9	17	63157135	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	300496	63157135	18038075	741	148871											
ABCA9	10350	broad.mit.edu	37	chr17	66992245	66992245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaattcatttataaacGttgttattttcaatttcact	6	5	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66992245	T	T	66992245	1	4	185	0	1	0	0	0	0	0	0	0	39	1160	40	3		3	ABCA9	17	66992245	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3835110	66992245	14202965	742	148872											
OTOP3	347741	broad.mit.edu	37	chr17	72938029	72938029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcggcagctgcaccttctGcctcaacatcttccgagtgg	9	15	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72938029	T	T	72938029	3	4	185	1	0	0	0	0	1	0	0	0	11401	1319	46	3	534	3	OTOP3	17	72938029	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5945784	72938029	8257181	743	148873											
TNRC6C	57690	broad.mit.edu	37	chr17	76045357	76045357	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtcagtggtggggatGgaaaaatggacactatgatt	14	5	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76045357	A	A	76045357	3	1	185	1	0	0	0	0	1	0	0	0	16465	1349	47	4	216	4	TNRC6C	17	76045357	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3107328	76045357	5149853	744	148874											
TNRC6C	57690	broad.mit.edu	37	chr17	76061008	76061008	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgttgctgcctcagccctGtgcaaaccaggtaagcctag	10	14	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76061008	A	A	76061008	2	1	185	1	0	0	0	0	0	0	0	1	16465	1364	48	4		4	TNRC6C	17	76061008	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	15651	76061008	5134202	745	148875											
CBX2	84733	broad.mit.edu	37	chr17	77757733	77757733	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcccatccggaagaagcGgggacgaaagcccctgcccc	13	15	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77757733	T	T	77757733	3	4	185	1	0	0	0	0	1	0	0	0	2744	1116	39	1	857	1	CBX2	17	77757733	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1696725	77757733	3437477	746	148876											
RNF213	57674	broad.mit.edu	37	chr17	78343442	78343442	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctctctcctcttcgtccAaaaggggcgcttaagagatg	10	12	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78343442	G	G	78343442	3	3	185	1	0	0	0	0	1	0	0	0	13588	130	5	5	12789	5	RNF213	17	78343442	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	585709	78343442	2851768	747	148877											
SECTM1	6398	broad.mit.edu	37	chr17	80280050	80280050	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcggctatgggtctgcgGcatatggaaacaagggttgg	17	7	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80280050	C	C	80280050	3	2	185	1	0	0	0	0	1	0	0	0	14121	1203	42	4	16	4	SECTM1	17	80280050	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1936608	80280050	915160	748	148878											
DLGAP1	9229	broad.mit.edu	37	chr18	3742422	3742422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcctgcagggtccaggctGtccaggctccggttgatgga	15	11	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3742422	T	T	3742422	3	4	185	1	0	0	0	0	1	0	0	0	4599	1368	48	3	1702	3	DLGAP1	18	3742422	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08		3742422	74334826	749	148879											
DLGAP1	9229	broad.mit.edu	37	chr18	4431041	4431041	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctacttcacggctcctaaCatgtgccctgttgtcctgga	8	14	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4431041	G	G	4431041	1	3	185	0	1	0	0	0	0	0	0	0	4599	493	17	4		4	DLGAP1	18	4431041	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	688619	4431041	73646207	750	148880											
FAM38B	63895	broad.mit.edu	37	chr18	10671622	10671622	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttctagctccagttctcCtgtctctcgaactaaaaaaa	4	12	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10671622	A	A	10671622	4	1	185	1	0	0	0	0	0	1	0	0	5606	690	24	2	101	2	FAM38B	18	10671622	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	6240581	10671622	67405626	751	148881											
FAM38B	63895	broad.mit.edu	37	chr18	10672688	10672688	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttcaatgagtccttaccCatagccagccaggaacccca	7	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10672688	T	T	10672688	3	4	185	1	0	0	0	0	1	0	0	0	5606	608	21	4	261	4	FAM38B	18	10672688	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1066	10672688	67404560	752	148882											
FAM38B	63895	broad.mit.edu	37	chr18	10672706	10672706	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatagccagccaggaaccCcagacttgggggactgactt	11	14	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10672706	T	T	10672706	3	4	185	1	0	0	0	0	1	0	0	0	5606	623	22	4	279	4	FAM38B	18	10672706	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	18	10672706	67404542	753	148883											
ZNF519	162655	broad.mit.edu	37	chr18	14105896	14105896	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgggtcagaagtttcacCacattcattagagttgtaag	10	6	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14105896	A	A	14105896	3	1	185	1	0	0	0	0	1	0	0	0	18091	594	21	2	983	2	ZNF519	18	14105896	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3433190	14105896	63971352	754	148884											
CDH2	1000	broad.mit.edu	37	chr18	25562988	25562988	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctggatcaattaaaagttGtttggcctggcgttctttat	9	6	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25562988	A	A	25562988	4	1	185	1	0	0	0	0	0	1	0	0	3135	1386	48	4	463	4	CDH2	18	25562988	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	11457092	25562988	52514260	755	148885											
RNF125	54941	broad.mit.edu	37	chr18	29617320	29617320	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcttctgaccccatggTacgcaccttttttttttttt	5	12	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29617320	A	A	29617320	1	1	185	0	1	0	0	0	0	0	0	0	13545	1653	57	5		5	RNF125	18	29617320	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	4054332	29617320	48459928	756	148886											
ASXL3	80816	broad.mit.edu	37	chr18	31325156	31325156	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaacaggcttccattgcctCttcaaactacctcagtgggt	7	13	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31325156	A	A	31325156	3	1	185	1	0	0	0	0	1	0	0	0	1072	913	32	3	5390	3	ASXL3	18	31325156	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1707836	31325156	46752092	757	148887											
PSTPIP2	9050	broad.mit.edu	37	chr18	43573687	43573687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctacagaaaaatagctaCgtgtacatagatatgcaagg	9	7	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43573687	A	A	43573687	1	1	185	0	1	0	0	0	0	0	0	0	12828	551	19	3		3	PSTPIP2	18	43573687	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	12248531	43573687	34503561	758	148888											
CXXC1	30827	broad.mit.edu	37	chr18	47810186	47810186	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcactgtcaccctcgttgctCtgcatggaatggaaggaaca	10	11	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47810186	T	T	47810186	5	4	185	1	0	0	0	0	0	0	1	0	4130	927	32	4	577	4	CXXC1	18	47810186	Splice_Site	SNP	C	TCGA-64-1678-01A-01W-0928-08	4236499	47810186	30267062	759	148889											
CCDC68	80323	broad.mit.edu	37	chr18	52602212	52602212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagttgtgttgtgaaaaCtctgtttttcttaaacctat	6	6	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52602212	A	A	52602212	1	1	185	0	1	0	0	0	0	0	0	0	2868	580	20	3		3	CCDC68	18	52602212	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	4792026	52602212	25475036	760	148890											
TCF4	6925	broad.mit.edu	37	chr18	52896212	52896212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaagcctcgttgatgtcaCggacccgcagacgctctcgg	12	13	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52896212	A	A	52896212	3	1	185	1	0	0	0	0	1	0	0	0	15817	536	19	3	278	3	TCF4	18	52896212	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	294000	52896212	25181036	761	148891											
NEDD4L	23327	broad.mit.edu	37	chr18	56024480	56024480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaacccagctattactgGtccggtcagtattttcaaat	8	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56024480	T	T	56024480	3	4	185	1	0	0	0	0	1	0	0	0	10406	1261	44	3	1865	3	NEDD4L	18	56024480	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3128268	56024480	22052768	762	148892											
CDH20	28316	broad.mit.edu	37	chr18	59195151	59195151	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgaacgttgacatattttGaatcttgaacctcagtggcg	9	7	2	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59195151	C	C	59195151	1	2	185	0	1	0	0	0	0	0	0	0	3136	1305	45	4		4	CDH20	18	59195151	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3170671	59195151	18882097	763	148893											
PIGN	23556	broad.mit.edu	37	chr18	59749964	59749964	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagcacacataacaagaaCaaaggggattaaaatctgta	7	6	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59749964	G	G	59749964	3	3	185	1	0	0	0	0	1	0	0	0	11988	478	17	4	293	4	PIGN	18	59749964	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	554813	59749964	18327284	764	148894											
PHLPP1	23239	broad.mit.edu	37	chr18	60646229	60646229	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggacatccactgcagccgGgccaaggagaaggagaaaca	14	10	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60646229	T	T	60646229	2	4	185	1	0	0	0	0	0	0	0	1	11949	1219	43	2		2	PHLPP1	18	60646229	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	896265	60646229	17431019	765	148895											
SERPINB4	6318	broad.mit.edu	37	chr18	61308033	61308033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaatccccacacctgttccCccatgcagtgtcaagcacaa	5	17	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61308033	A	A	61308033	1	1	185	0	1	0	0	0	0	0	0	0	14216	638	22	2		2	SERPINB4	18	61308033	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	661804	61308033	16769215	766	148896											
SERPINB11	89778	broad.mit.edu	37	chr18	61387285	61387285	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggaaagagcacaattgacCcttcatctgtaatggtcctg	9	9	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61387285	T	T	61387285	3	4	185	1	0	0	0	0	1	0	0	0	14211	623	22	4	532	4	SERPINB11	18	61387285	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	79252	61387285	16689963	767	148897											
SERPINB7	8710	broad.mit.edu	37	chr18	61449757	61449758	+	Frame_Shift_Del	DEL	CT	-	-													tgggcgctcaagatgactccCtctctcagattgataaggtc							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61449758	-	-	61449757	7	5	185	1	0	1	0	1	0	0	0	0	14219	681	24	0	153	0	SERPINB7	18	61449757	Frame_Shift_Del	DEL	CT	TCGA-64-1678-01A-01W-0928-08	62472	61449757	16627491	768	148898											
ZADH2	284273	broad.mit.edu	37	chr18	72920923	72920923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagcttctgcatggcttGgggaatggcggagccctgga	15	11	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72920923	T	T	72920923	3	4	185	1	0	0	0	0	1	0	0	0	17638	1357	47	2	1050	2	ZADH2	18	72920923	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	11471166	72920923	5156325	769	148899											
C18orf62	284274	broad.mit.edu	37	chr18	73139584	73139584	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgactctgaggacacagagcTggtgctataagacctggtaa	12	9	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73139584	G	G	73139584	1	3	185	0	1	0	0	0	0	0	0	0	1925	1595	55	5		5	C18orf62	18	73139584	5'UTR	SNP	T	TCGA-64-1678-01A-01W-0928-08	218661	73139584	4937664	770	148900											
C18orf22	79863	broad.mit.edu	37	chr18	77798620	77798620	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtgccgcgcacatgaggtGatgacctttgctttctgaat	11	9	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77798620	A	A	77798620	1	1	185	0	1	0	0	0	0	0	0	0	1916	1305	45	4		4	C18orf22	18	77798620	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	4659036	77798620	278628	771	148901											
FEM1A	55527	broad.mit.edu	37	chr19	4793326	4793326	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcccagggagcccggagActcagcccagttcaccaagg	13	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4793326	T	T	4793326	3	4	185	1	0	0	0	0	1	0	0	0	5866	275	10	5	1462	5	FEM1A	19	4793326	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08		4793326	54335657	772	148902											
PTPRS	5802	broad.mit.edu	37	chr19	5219928	5219928	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtgtgtctggatgtggGcggacaccattcaggactta	15	7	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5219928	A	A	5219928	1	1	185	0	1	0	0	0	0	0	0	0	12919	1218	42	4		4	PTPRS	19	5219928	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	426602	5219928	53909055	773	148903											
FBN3	84467	broad.mit.edu	37	chr19	8153084	8153084	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtgggagtaagggggtGgtcagcacctgcagagggtc	20	7	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8153084	A	A	8153084	1	1	185	0	1	0	0	0	0	0	0	0	5761	1363	47	4		4	FBN3	19	8153084	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2933156	8153084	50975899	774	148904											
MUC16	94025	broad.mit.edu	37	chr19	9020871	9020871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgagtaggagggctaaGgtgcatgtgtgtggggcaga	19	3	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9020871	A	A	9020871	1	1	185	0	1	0	0	0	0	0	0	0	10067	1015	35	4		4	MUC16	19	9020871	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	867787	9020871	50108112	775	148905											
MUC16	94025	broad.mit.edu	37	chr19	9074611	9074611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgtcccccatgatgtGggaggtaaccaatggagatg	14	7	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9074611	T	T	9074611	3	4	185	1	0	0	0	0	1	0	0	0	10067	1348	47	2	31016	2	MUC16	19	9074611	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	53740	9074611	50054372	776	148906											
ZNF560	147741	broad.mit.edu	37	chr19	9578658	9578658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttccccacattgcttcCattcattgagtttttctcca	4	13	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9578658	A	A	9578658	3	1	185	1	0	0	0	0	1	0	0	0	18118	595	21	2	1411	2	ZNF560	19	9578658	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	504047	9578658	49550325	777	148907											
BRD4	23476	broad.mit.edu	37	chr19	15365073	15365073	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcacatcaactttctcaGctgcaatccaagcaatggga	6	12	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15365073	A	A	15365073	3	1	185	1	0	0	0	0	1	0	0	0	1513	985	34	4	2095	4	BRD4	19	15365073	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5786415	15365073	43763910	778	148908											
NWD1	284434	broad.mit.edu	37	chr19	16925914	16925914	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagtggcttcattgcccCcaccaggcatggttatctga	9	14	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16925914	A	A	16925914	1	1	185	0	1	0	0	0	0	0	0	0	10876	623	22	2		2	NWD1	19	16925914	3'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	1560841	16925914	42203069	779	148909											
ZNF208	7757	broad.mit.edu	37	chr19	22155657	22155657	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtactaaagcttttgcCacattcttcacatttgtagg	7	8	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22155657	G	G	22155657	3	3	185	1	0	0	0	0	1	0	0	0	17892	594	21	4	1667	4	ZNF208	19	22155657	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	5229743	22155657	36973326	780	148910											
ZNF208	7757	broad.mit.edu	37	chr19	22157153	22157153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattctttacatctgtagGgtttctctccagtatgagca	7	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22157153	T	T	22157153	3	4	185	1	0	0	0	0	1	0	0	0	17892	1232	43	2	3163	2	ZNF208	19	22157153	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1496	22157153	36971830	781	148911											
ZNF681	148213	broad.mit.edu	37	chr19	23941665	23941665	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacagagcagtgaagacgaGacccggagctcgggctgaag	15	10	0	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23941665	A	A	23941665	1	1	185	0	1	0	0	0	0	0	0	0	18215	957	33	4		4	ZNF681	19	23941665	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	1784512	23941665	35187318	782	148912											
ZNF254	9534	broad.mit.edu	37	chr19	24309689	24309689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaaaccttacaagtGtgaagaatgtggcaaagcat	12	5	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24309689	T	T	24309689	3	4	185	1	0	0	0	0	1	0	0	0	17924	1377	48	3	901	3	ZNF254	19	24309689	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	368024	24309689	34819294	783	148913											
LSM14A	26065	broad.mit.edu	37	chr19	34710724	34710724	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaagatccacttggacctAattgctattatgacaaaact	6	8	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34710724	T	T	34710724	3	4	185	1	0	0	0	0	1	0	0	0	9141	362	13	5	1108	5	LSM14A	19	34710724	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	10401035	34710724	24418259	784	148914											
RBM42	79171	broad.mit.edu	37	chr19	36120510	36120510	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccccacggtccccacagtaGaagcgatgcaggtcccagcg	11	16	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36120510	A	A	36120510	3	1	185	1	0	0	0	0	1	0	0	0	13244	943	33	4	223	4	RBM42	19	36120510	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1409786	36120510	23008473	785	148915											
PSMD8	5714	broad.mit.edu	37	chr19	38873891	38873891	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaatccctcctttcctgcAgcgagggtgggtcctgggcc	12	14	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38873891	T	T	38873891	5	4	185	1	0	0	0	0	0	0	1	0	12810	202	7	5	940	5	PSMD8	19	38873891	Splice_Site	SNP	A	TCGA-64-1678-01A-01W-0928-08	2753381	38873891	20255092	786	148916											
FAM98C	147965	broad.mit.edu	37	chr19	38896205	38896205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagagatcagtaccgctGccgccgctgcctcctcctca	8	19	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38896205	T	T	38896205	3	4	185	1	0	0	0	0	1	0	0	0	5715	1319	46	3	702	3	FAM98C	19	38896205	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	22314	38896205	20232778	787	148917											
RYR1	6261	broad.mit.edu	37	chr19	38983214	38983214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctgttggagaaagtgcGgctggtgaagaagaaggaag	18	4	0	4	rs139775280		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38983214	T	T	38983214	3	4	185	1	0	0	0	0	1	0	0	0	13879	1116	39	1	6362	1	RYR1	19	38983214	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	87009	38983214	20145769	788	148918											
SUPT5H	6829	broad.mit.edu	37	chr19	39964522	39964522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaattgcttcagttggGggtctggtgtagggtgctgt	16	4	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39964522	T	T	39964522	1	4	185	0	1	0	0	0	0	0	0	0	15517	1247	43	2		2	SUPT5H	19	39964522	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	981308	39964522	19164461	789	148919											
ITPKC	80271	broad.mit.edu	37	chr19	41231438	41231438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcccccacctagtgatggGcttggtgacagtccccacct	10	15	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41231438	A	A	41231438	1	1	185	0	1	0	0	0	0	0	0	0	7989	1218	42	4		4	ITPKC	19	41231438	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1266916	41231438	17897545	790	148920											
ZNF526	116115	broad.mit.edu	37	chr19	42729117	42729117	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccactgcctccaccttctCccccatccgaagtcaagatg	5	19	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42729117	T	T	42729117	3	4	185	1	0	0	0	0	1	0	0	0	18094	855	30	4	564	4	ZNF526	19	42729117	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1497679	42729117	16399866	791	148921											
PSG1	5669	broad.mit.edu	37	chr19	43343387	43343387	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagcaaataagtcttttccCtctcccaagcatggcagtca	6	13	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43343387	T	T	43343387	1	4	185	0	1	0	0	0	0	0	0	0	12759	696	24	4		4	PSG1	19	43343387	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	614270	43343387	15785596	792	148922											
PSG6	5675	broad.mit.edu	37	chr19	43412011	43412011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgggcagcttcgctgtGtggataacagaagattgtcc	14	8	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43412011	T	T	43412011	1	4	185	0	1	0	0	0	0	0	0	0	12765	1392	48	3		3	PSG6	19	43412011	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	68624	43412011	15716972	793	148923											
CD177	57126	broad.mit.edu	37	chr19	43866219	43866219	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtactctgtgtcctttctGacttggtcttctccctctag	7	13	5	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43866219	T	T	43866219	1	4	185	0	1	0	0	0	0	0	0	0	3001	1305	45	3		3	CD177	19	43866219	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	454208	43866219	15262764	794	148924											
APOE	348	broad.mit.edu	37	chr19	45409802	45409802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggccgggttggggccgGgctgggggtgggaggagtcc	25	7	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45409802	T	T	45409802	1	4	185	0	1	0	0	0	0	0	0	0	804	1247	43	2		2	APOE	19	45409802	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1543583	45409802	13719181	795	148925											
CLPTM1	1209	broad.mit.edu	37	chr19	45495879	45495879	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctctccagatgtggttttCttcatctacctctaccaacg	5	15	5	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45495879	T	T	45495879	2	4	185	1	0	0	0	0	0	0	0	1	3586	912	32	4		4	CLPTM1	19	45495879	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	86077	45495879	13633104	796	148926											
EML2	24139	broad.mit.edu	37	chr19	46116800	46116800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctccccaagggactcactCgaggctgacagcaggggtag	13	12	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46116800	A	A	46116800	3	1	185	1	0	0	0	0	1	0	0	0	5139	898	31	3	134	3	EML2	19	46116800	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	620921	46116800	13012183	797	148927											
SNRPD2	6633	broad.mit.edu	37	chr19	46195116	46195116	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatccaccctcaacctcattCccgccgcctaagcctagccc	4	21	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46195116	T	T	46195116	1	4	185	0	1	0	0	0	0	0	0	0	14979	870	30	4		4	SNRPD2	19	46195116	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	78316	46195116	12933867	798	148928											
SLC1A5	6510	broad.mit.edu	37	chr19	47285847	47285847	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtggaaaggacactcagTctacctgcacagtcactgag	13	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47285847	C	C	47285847	1	2	185	0	1	0	0	0	0	0	0	0	14548	1682	58	5		5	SLC1A5	19	47285847	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1090731	47285847	11843136	799	148929											
CGB5	93659	broad.mit.edu	37	chr19	49547415	49547415	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtggccttgccgcccCcacaaccccgaggtataaag	10	16	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49547415	A	A	49547415	1	1	185	0	1	0	0	0	0	0	0	0	3329	638	22	2		2	CGB5	19	49547415	5'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	2261568	49547415	9581568	800	148930											
TRPM4	54795	broad.mit.edu	37	chr19	49691969	49691969	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcacgcctggagcctgaCgctgaggaggcagcacggag	17	11	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49691969	T	T	49691969	2	4	185	1	0	0	0	0	0	0	0	1	16713	535	19	4		4	TRPM4	19	49691969	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	144554	49691969	9437014	801	148931											
SIGLEC11	114132	broad.mit.edu	37	chr19	50462124	50462124	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctttggccctccaggaccGggagggatgtgccgttcccg	16	13	0	0	rs149136670	byFrequency	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50462124	C	C	50462124	3	2	185	1	0	0	0	0	1	0	0	0	14420	1116	39	4	977	4	SIGLEC11	19	50462124	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	770155	50462124	8666859	802	148932											
NR1H2	7376	broad.mit.edu	37	chr19	50885781	50885781	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgctgagctctgtgcactcGgagcaggtcttcgccttgcg	13	13	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50885781	A	A	50885781	2	1	185	1	0	0	0	0	0	0	0	1	10712	1103	39	4		4	NR1H2	19	50885781	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	423657	50885781	8243202	803	148933											
MYBPC2	4606	broad.mit.edu	37	chr19	50957609	50957609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagccaccaatgtacgatgGggggaagccagtcaccggtg	16	10	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50957609	A	A	50957609	3	1	185	1	0	0	0	0	1	0	0	0	10106	1232	43	4	2067	4	MYBPC2	19	50957609	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	71828	50957609	8171374	804	148934											
SHANK1	50944	broad.mit.edu	37	chr19	51192441	51192441	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcccatcccctccccGgctggcactcacccttggcc	6	23	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51192441	A	A	51192441	1	1	185	0	1	0	0	0	0	0	0	0	14377	1131	39	4		4	SHANK1	19	51192441	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	234832	51192441	7936542	805	148935											
C19orf75	284369	broad.mit.edu	37	chr19	51770634	51770634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatttccttagagtgaaaCatatcagaaagaagcaggcg	9	7	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51770634	A	A	51770634	3	1	185	1	0	0	0	0	1	0	0	0	1969	478	17	3	432	3	C19orf75	19	51770634	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	578193	51770634	7358349	806	148936											
NKG7	4818	broad.mit.edu	37	chr19	51875332	51875332	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaccatggagatggctgGggacaaggacaagagagatg	15	8	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51875332	T	T	51875332	1	4	185	0	1	0	0	0	0	0	0	0	10538	1247	43	2		2	NKG7	19	51875332	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	104698	51875332	7253651	807	148937											
ZNF610	162963	broad.mit.edu	37	chr19	52869019	52869019	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaacttggattaacccttGaggcacatctgtctgaattg	8	9	3	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52869019	T	T	52869019	4	4	185	1	0	0	0	0	0	1	0	0	18163	1291	45	3	402	3	ZNF610	19	52869019	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	993687	52869019	6259964	808	148938											
ZNF578	147660	broad.mit.edu	37	chr19	52977390	52977390	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgcctgaagaccttgccaCgttcatgacatttgtaaggt	9	9	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52977390	T	T	52977390	1	4	185	0	1	0	0	0	0	0	0	0	18137	551	19	4		4	ZNF578	19	52977390	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	108371	52977390	6151593	809	148939											
ZNF160	90338	broad.mit.edu	37	chr19	53571731	53571732	+	Frame_Shift_Del	DEL	AG	-	-													aaggtgtgagttctgagtgaAgaccttgccacattgattac							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53571732	-	-	53571731	7	5	185	1	0	1	0	1	0	0	0	0	17865	72	3	0	404	0	ZNF160	19	53571731	Frame_Shift_Del	DEL	AG	TCGA-64-1678-01A-01W-0928-08	594341	53571731	5557252	810	148940											
NLRP12	91662	broad.mit.edu	37	chr19	54314478	54314478	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacacattcccctaggcgCgcattgcggtcttccatgag	10	13	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54314478	A	A	54314478	2	1	185	1	0	0	0	0	0	0	0	1	10569	755	27	3		3	NLRP12	19	54314478	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	742747	54314478	4814505	811	148941											
LAIR1	3903	broad.mit.edu	37	chr19	54870273	54870273	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcagtattaataggagcatCcctcctttggggttttctaa	8	9	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54870273	A	A	54870273	1	1	185	0	1	0	0	0	0	0	0	0	8674	870	30	3		3	LAIR1	19	54870273	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	555795	54870273	4258710	812	148942											
KIR3DL1	3811	broad.mit.edu	37	chr19	55367481	55367481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagagaacacgaagactgGgtgtgaggggggggtcaggg	21	5	1	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55367481	T	T	55367481	1	4	185	0	1	0	0	0	0	0	0	0	8391	1247	43	2		2	KIR3DL1	19	55367481	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	497208	55367481	3761502	813	148943											
KIR3DL1	3811	broad.mit.edu	37	chr19	55378056	55378056	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacagagaaaaatcagtcGcccttctcagaggcccaaga	8	12	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55378056	T	T	55378056	3	4	185	1	0	0	0	0	1	0	0	0	8391	1087	38	3		3	KIR3DL1	19	55378056	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	10575	55378056	3750927	814	148944											
NLRP4	147945	broad.mit.edu	37	chr19	56392837	56392837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaaaatattttaccaggCtgagaaaaactgattttgat	6	5	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56392837	A	A	56392837	3	1	185	1	0	0	0	0	1	0	0	0	10574	811	28	3	2903	3	NLRP4	19	56392837	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1014781	56392837	2736146	815	148945											
NLRP13	126204	broad.mit.edu	37	chr19	56421924	56421924	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgctggcgtctcacaCttacgtcagtttctggactt	10	11	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56421924	A	A	56421924	1	1	185	0	1	0	0	0	0	0	0	0	10570	580	20	3		3	NLRP13	19	56421924	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	29087	56421924	2707059	816	148946											
NLRP5	126206	broad.mit.edu	37	chr19	56515551	56515551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatcgttgttcagtaaccGgctccacctctgcagtgtga	10	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56515551	T	T	56515551	1	4	185	0	1	0	0	0	0	0	0	0	10575	1131	39	1		1	NLRP5	19	56515551	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	93627	56515551	2613432	817	148947											
ZNF583	147949	broad.mit.edu	37	chr19	56925505	56925505	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacatgggactgagctccaAtgtaatatttgggaaacctc	10	8	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56925505	G	G	56925505	1	3	185	0	1	0	0	0	0	0	0	0	18142	116	4	5		5	ZNF583	19	56925505	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	409954	56925505	2203478	818	148948											
ZIM2	23619	broad.mit.edu	37	chr19	57293514	57293514	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagagagaggagaagggaCgtgattagagaggactgaac	16	6	0	6			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57293514	A	A	57293514	1	1	185	0	1	0	0	0	0	0	0	0	17810	551	19	3		3	ZIM2	19	57293514	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	368009	57293514	1835469	819	148949											
PEG3	5178	broad.mit.edu	37	chr19	57329065	57329065	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtagaagttccttgataGcatctcactggttgtgtggc	12	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57329065	A	A	57329065	1	1	185	0	1	0	0	0	0	0	0	0	11814	986	34	4		4	PEG3	19	57329065	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	35551	57329065	1799918	820	148950											
PEG3	5178	broad.mit.edu	37	chr19	57334861	57334861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgaccactcggggatgGcgggtcatcttcatggaggc	15	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57334861	T	T	57334861	1	4	185	0	1	0	0	0	0	0	0	0	11814	1218	42	3		3	PEG3	19	57334861	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	5796	57334861	1794122	821	148951											
ANGPT4	51378	broad.mit.edu	37	chr20	870752	870752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctacaggcccagaggaggCcttgaccctactcagggtca	13	13	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	870752	A	A	870752	1	1	185	0	1	0	0	0	0	0	0	0	612	754	26	3		3	ANGPT4	20	870752	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08		870752	62154768	822	148952											
NSFL1C	55968	broad.mit.edu	37	chr20	1438957	1438957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaaatgatctcagggagCattaagaaaggtaaccctca	9	8	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1438957	A	A	1438957	1	1	185	0	1	0	0	0	0	0	0	0	10767	725	25	3		3	NSFL1C	20	1438957	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	568205	1438957	61586563	823	148953											
CPXM1	56265	broad.mit.edu	37	chr20	2775235	2775235	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaatgacagcgtcagcaatCccaagctccgtgtccttgtc	9	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2775235	T	T	2775235	2	4	185	1	0	0	0	0	0	0	0	1	3869	842	30	4		4	CPXM1	20	2775235	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	1336278	2775235	60250285	824	148954											
KIF16B	55614	broad.mit.edu	37	chr20	16348432	16348432	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attagcgcaggcagcggcatCaggctctggcatcaggacac	13	12	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16348432	A	A	16348432	1	1	185	0	1	0	0	0	0	0	0	0	8348	841	29	3		3	KIF16B	20	16348432	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	13573197	16348432	46677088	825	148955											
CSRP2BP	57325	broad.mit.edu	37	chr20	18168205	18168205	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggagctctaatctctgtGattacatggtccttcaaact	8	10	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18168205	A	A	18168205	1	1	185	0	1	0	0	0	0	0	0	0	4002	1305	45	4		4	CSRP2BP	20	18168205	3'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	1819773	18168205	44857315	826	148956											
PAX1	5075	broad.mit.edu	37	chr20	21695388	21695388	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctctggccggacccaCcacacttcctttattggtct	7	17	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21695388	T	T	21695388	3	4	185	1	0	0	0	0	1	0	0	0	11572	507	18	4	1570	4	PAX1	20	21695388	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	3527183	21695388	41330132	827	148957											
GZF1	64412	broad.mit.edu	37	chr20	23345114	23345114	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctcctgggtcacctgtgtGacgtgacagtcagcgtggag	15	11	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23345114	A	A	23345114	3	1	185	1	0	0	0	0	1	0	0	0	6979	1290	45	4	96	4	GZF1	20	23345114	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1649726	23345114	39680406	828	148958											
CST7	8530	broad.mit.edu	37	chr20	24937902	24937902	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaacatcagtgttcttgtCtggctctttgtctctttcag	7	10	6	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24937902	A	A	24937902	1	1	185	0	1	0	0	0	0	0	0	0	4011	928	32	3		3	CST7	20	24937902	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1592788	24937902	38087618	829	148959											
TTLL9	164395	broad.mit.edu	37	chr20	30475102	30475102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttctctccctccctcccCttttcaatccctctctccct	0	22	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30475102	A	A	30475102	1	1	185	0	1	0	0	0	0	0	0	0	16860	696	24	2		2	TTLL9	20	30475102	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	5537200	30475102	32550418	830	148960											
DNMT3B	1789	broad.mit.edu	37	chr20	31383385	31383385	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggacagatgggaggaggaCgctgcagatcaggaattgat	17	5	1	3	rs111697392	by1000genomes	TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31383385	T	T	31383385	1	4	185	0	1	0	0	0	0	0	0	0	4717	551	19	4		4	DNMT3B	20	31383385	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	908283	31383385	31642135	831	148961											
SLC32A1	140679	broad.mit.edu	37	chr20	37357011	37357011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgggggctgacgctgcGctgcgcgctcgtcgtcttca	15	14	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37357011	T	T	37357011	3	4	185	1	0	0	0	0	1	0	0	0	14679	1087	38	3	1313	3	SLC32A1	20	37357011	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5973626	37357011	25668509	832	148962											
IFT52	51098	broad.mit.edu	37	chr20	42275734	42275734	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatacactctttcctccatgAgctctggaaggtatatgcat	7	10	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42275734	C	C	42275734	1	2	185	0	1	0	0	0	0	0	0	0	7631	319	11	5		5	IFT52	20	42275734	3'UTR	SNP	A	TCGA-64-1678-01A-01W-0928-08	4918723	42275734	20749786	833	148963											
R3HDML	140902	broad.mit.edu	37	chr20	42969754	42969754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatggggtagaaacggcaCcaggtaaatgtgcatctctg	14	7	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42969754	A	A	42969754	1	1	185	0	1	0	0	0	0	0	0	0	12997	522	18	3		3	R3HDML	20	42969754	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	694020	42969754	20055766	834	148964											
ZMYND8	23613	broad.mit.edu	37	chr20	45865286	45865286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaaagcatcctgattaCcccacgtgggaaggacccat	10	12	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45865286	A	A	45865286	1	1	185	0	1	0	0	0	0	0	0	0	17837	522	18	3		3	ZMYND8	20	45865286	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	2895532	45865286	17160234	835	148965											
CASS4	57091	broad.mit.edu	37	chr20	55012236	55012236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcactcctggccagggCactttatgacaactgccctg	10	14	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55012236	A	A	55012236	3	1	185	1	0	0	0	0	1	0	0	0	2709	710	25	3	59	3	CASS4	20	55012236	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	9146950	55012236	8013284	836	148966											
APCDD1L	164284	broad.mit.edu	37	chr20	57045641	57045641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagtccaggggtccatGgtcaggatgacctgaagtct	12	12	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57045641	T	T	57045641	1	4	185	0	1	0	0	0	0	0	0	0	768	1363	47	2		2	APCDD1L	20	57045641	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2033405	57045641	5979879	837	148967											
TUBB1	81027	broad.mit.edu	37	chr20	57598479	57598479	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaccagtatcacaaagttcTattttgataaaacattaact	5	7	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57598479	A	A	57598479	1	1	185	0	1	0	0	0	0	0	0	0	16879	1537	53	5		5	TUBB1	20	57598479	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	552838	57598479	5427041	838	148968											
TPTE	7179	broad.mit.edu	37	chr21	10920156	10920156	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcctttctccaaaataataCaggctttcctacaaaaaagg	5	11	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10920156	A	A	10920156	2	1	185	1	0	0	0	0	0	0	0	1	16554	465	17	3		3	TPTE	21	10920156	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08		10920156	37209739	839	148969											
TPTE	7179	broad.mit.edu	37	chr21	10951204	10951204	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcctcccacctcagcctcCgaaagtgcttcttataaaac	5	15	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10951204	T	T	10951204	1	4	185	0	1	0	0	0	0	0	0	0	16554	667	23	4		4	TPTE	21	10951204	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	31048	10951204	37178691	840	148970											
BAGE2	85319	broad.mit.edu	37	chr21	11049711	11049711	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatttgaaaggatttgcatCatgaacctttcagacatttg	7	7	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11049711	A	A	11049711	1	1	185	0	1	0	0	0	0	0	0	0	1297	841	29	3		3	BAGE2	21	11049711	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	98507	11049711	37080184	841	148971											
TMPRSS15	5651	broad.mit.edu	37	chr21	19687505	19687505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcacagtgcagatgacCgtcacagagattcaccagtg	9	12	3	3	rs139992374		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19687505	A	A	19687505	3	1	185	1	0	0	0	0	1	0	0	0	16369	652	23	1	1105	1	TMPRSS15	21	19687505	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	8637794	19687505	28442390	842	148972											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212677	28212677	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagctggtgccatccgccCacgggaagtgtttggtttga	13	11	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28212677	T	T	28212677	4	4	185	1	0	0	0	0	0	1	0	0	255	595	21	4	1340	4	ADAMTS1	21	28212677	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	8525172	28212677	19917218	843	148973											
ADAMTS5	11096	broad.mit.edu	37	chr21	28302275	28302275	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccacatactccgcacttgtCatactgcagctttgagccaa	6	14	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28302275	A	A	28302275	3	1	185	1	0	0	0	0	1	0	0	0	269	826	29	3	645	3	ADAMTS5	21	28302275	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	89598	28302275	19827620	844	148974											
ADAMTS5	11096	broad.mit.edu	37	chr21	28304454	28304454	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactccttttgcatcagactGatagccatttttggcctcac	7	12	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28304454	T	T	28304454	3	4	185	1	0	0	0	0	1	0	0	0	269	1299	45	3	886	3	ADAMTS5	21	28304454	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2179	28304454	19825441	845	148975											
N6AMT1	29104	broad.mit.edu	37	chr21	30252218	30252218	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggagtcactacataggGgggattaaacaccagaagat	13	6	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30252218	T	T	30252218	3	4	185	1	0	0	0	0	1	0	0	0	10208	1232	43	2	286	2	N6AMT1	21	30252218	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1947764	30252218	17877677	846	148976											
GRIK1	2897	broad.mit.edu	37	chr21	30959772	30959772	+	Frame_Shift_Del	DEL	G	-	-													ggagacagggggttgaggaaGgagaaaacgcctggattggt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30959772	-	-	30959772	7	5	185	1	0	1	0	1	0	0	0	0	6839	987	35	0	1233	0	GRIK1	21	30959772	Frame_Shift_Del	DEL	G	TCGA-64-1678-01A-01W-0928-08	707554	30959772	17170123	847	148977											
CLDN8	9073	broad.mit.edu	37	chr21	31588059	31588059	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcatagattttgcactgcAtcctgatgttagcctgcctc	7	11	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31588059	T	T	31588059	3	4	185	1	0	0	0	0	1	0	0	0	3523	217	8	5	496	5	CLDN8	21	31588059	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	628287	31588059	16541836	848	148978											
KRTAP13-3	337960	broad.mit.edu	37	chr21	31798334	31798334	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctctcagcaataggtgtGgtgcacagcagagtcatccc	10	12	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31798334	T	T	31798334	1	4	185	0	1	0	0	0	0	0	0	0	8595	1363	47	2		2	KRTAP13-3	21	31798334	5'Flank	SNP	G	TCGA-64-1678-01A-01W-0928-08	210275	31798334	16331561	849	148979											
KRTAP20-1	337975	broad.mit.edu	37	chr21	31985998	31985999	+	5'Flank	DNP	CA	AT	AT													gatagagggtgagagtctccCatggcatcctcaataatagt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	31985999	AT	AT	31985998	1	1	185	0	1	0	0	0	0	0	0	0	8607	609	21	2		2	KRTAP20-1	21	31985998	5'Flank	DNP	CA	TCGA-64-1678-01A-01W-0928-08	187664	31985998	16143897	850	148980											
ITSN1	6453	broad.mit.edu	37	chr21	35124178	35124178	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtcacaactaaacactaAattacaaaaggcacagtcat	6	9	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35124178	C	C	35124178	3	2	185	1	0	0	0	0	1	0	0	0	7996	14	1	5	612	5	ITSN1	21	35124178	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	3138180	35124178	13005717	851	148981											
KRTAP10-9	386676	broad.mit.edu	37	chr21	46047579	46047579	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattcctattcatgctgccAacagtctagctgccagccag	9	13	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46047579	T	T	46047579	3	4	185	1	0	0	0	0	1	0	0	0	8587	130	5	5	493	5	KRTAP10-9	21	46047579	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	10923401	46047579	2082316	852	148982											
COL6A1	1291	broad.mit.edu	37	chr21	47422366	47422366	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgcctagggcgccccgccAgccagggtggccttgtcccc	13	20	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47422366	T	T	47422366	1	4	185	0	1	0	0	0	0	0	0	0	3731	203	7	5		5	COL6A1	21	47422366	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	1374787	47422366	707529	853	148983											
DIP2A	23181	broad.mit.edu	37	chr21	47978160	47978160	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggtgaacctgtcatgtGtgcgcacgtgcatggtggtc	17	8	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47978160	T	T	47978160	3	4	185	1	0	0	0	0	1	0	0	0	4567	1377	48	3	4062	3	DIP2A	21	47978160	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	555794	47978160	151735	854	148984											
RTDR1	27156	broad.mit.edu	37	chr22	23401723	23401723	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgaggcttttcgtaagtctCcacctccatggcacggaaag	10	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23401723	A	A	23401723	4	1	185	1	0	0	0	0	0	1	0	0	13830	864	30	3	86	3	RTDR1	22	23401723	Nonsense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08		23401723	27902843	855	148985											
CRYBA4	1413	broad.mit.edu	37	chr22	27019232	27019232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggacggcttccagggccGgcggcacgagttcacggccg	17	13	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27019232	T	T	27019232	3	4	185	1	0	0	0	0	1	0	0	0	3941	1116	39	1	80	1	CRYBA4	22	27019232	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3617509	27019232	24285334	856	148986											
SF3A1	10291	broad.mit.edu	37	chr22	30738935	30738935	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacaaagaggcagccttccTgggcctgtgataaagcacag	12	10	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30738935	A	A	30738935	1	1	185	0	1	0	0	0	0	0	0	0	14259	1595	55	5		5	SF3A1	22	30738935	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	3719703	30738935	20565631	857	148987											
SLC5A4	6527	broad.mit.edu	37	chr22	32620393	32620393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgggagccaagcaactcCctgttccataagcaaactct	7	13	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32620393	A	A	32620393	3	1	185	1	0	0	0	0	1	0	0	0	14781	623	22	2	465	2	SLC5A4	22	32620393	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1881458	32620393	18684173	858	148988											
CSF2RB	1439	broad.mit.edu	37	chr22	37329915	37329915	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaacgcccacagcatggcCctgccagccctggagccctc	10	19	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37329915	A	A	37329915	2	1	185	1	0	0	0	0	0	0	0	1	3969	610	22	2		2	CSF2RB	22	37329915	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	4709522	37329915	13974651	859	148989											
IL2RB	3560	broad.mit.edu	37	chr22	37532295	37532295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtcctgaaggccagggGctggctccaggggctccagg	16	12	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37532295	T	T	37532295	3	4	185	1	0	0	0	0	1	0	0	0	7757	1203	42	3	995	3	IL2RB	22	37532295	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	202380	37532295	13772271	860	148990											
IL17REL	400935	broad.mit.edu	37	chr22	50438923	50438923	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaccttccacgaggtgcctCtggtccagctggaccccgca	10	17	1	0	rs137904241		TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50438923	A	A	50438923	3	1	185	1	0	0	0	0	1	0	0	0	7714	912	32	3	728	3	IL17REL	22	50438923	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	12906628	50438923	865643	861	148991											
PPP2R3B	28227	broad.mit.edu	37	chrX	308043	308043	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagatggacgaacttggCcgcgtcgtcgtggcagttct	15	10	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	308043	A	A	308043	3	1	185	1	0	0	0	0	1	0	0	0	12490	739	26	3	1124	3	PPP2R3B	23	308043	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08		308043	154962517	862	148992											
ZBED1	9189	broad.mit.edu	37	chrX	2407033	2407033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaagcaccttctgggaCttgaagttgctcagctcctc	10	13	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2407033	A	A	2407033	3	1	185	1	0	0	0	0	1	0	0	0	17644	564	20	3	360	3	ZBED1	23	2407033	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	2098990	2407033	152863527	863	148993											
MXRA5	25878	broad.mit.edu	37	chrX	3235270	3235270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccgtcctccgcggggagGtgcccgtgatgcgcgcgttg	17	14	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3235270	T	T	3235270	3	4	185	1	0	0	0	0	1	0	0	0	10097	1261	44	3	2042	3	MXRA5	23	3235270	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	828237	3235270	152035290	864	148994											
FAM9A	171482	broad.mit.edu	37	chrX	8762960	8762960	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctcagttggacccctaatGctgcgtggcaattatattcc	8	12	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8762960	C	C	8762960	1	2	185	0	1	0	0	0	0	0	0	0	5716	1334	46	4		4	FAM9A	23	8762960	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	5527690	8762960	146507600	865	148995											
FRMPD4	9758	broad.mit.edu	37	chrX	12724906	12724906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgaaatggagtcataccCaatagagttaacacctgagg	10	8	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12724906	A	A	12724906	1	1	185	0	1	0	0	0	0	0	0	0	6119	609	21	2		2	FRMPD4	23	12724906	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	3961946	12724906	142545654	866	148996											
FRMPD4	9758	broad.mit.edu	37	chrX	12735148	12735148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacgctgtgcccaccagcgCcgaaggcaagtgtgagaagg	15	11	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12735148	A	A	12735148	3	1	185	1	0	0	0	0	1	0	0	0	6119	739	26	3	2628	3	FRMPD4	23	12735148	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	10242	12735148	142535412	867	148997											
CTPS2	56474	broad.mit.edu	37	chrX	16709790	16709790	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggattcactttcagcaGgatgccacattcatttcttt	6	10	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16709790	A	A	16709790	1	1	185	0	1	0	0	0	0	0	0	0	4057	1015	35	4		4	CTPS2	23	16709790	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	3974642	16709790	138560770	868	148998											
NHS	4810	broad.mit.edu	37	chrX	17746185	17746185	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgcacaacctgaatctgTggatgtaatcacatctcagt	8	9	3	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17746185	A	A	17746185	3	1	185	1	0	0	0	0	1	0	0	0	10506	1696	59	5	4023	5	NHS	23	17746185	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	1036395	17746185	137524375	869	148999											
MAP3K15	389840	broad.mit.edu	37	chrX	19443781	19443781	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttctccaagctcccttttCttcccaacaaactgttcagc	3	15	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19443781	T	T	19443781	1	4	185	0	1	0	0	0	0	0	0	0	9341	913	32	4		4	MAP3K15	23	19443781	5'UTR	SNP	C	TCGA-64-1678-01A-01W-0928-08	1697596	19443781	135826779	870	149000											
SMS	6611	broad.mit.edu	37	chrX	22012524	22012524	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccttcctgacctccatatGctgtacatgacatcaaaatg	6	12	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22012524	T	T	22012524	1	4	185	0	1	0	0	0	0	0	0	0	14927	1334	46	3		3	SMS	23	22012524	3'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	2568743	22012524	133258036	871	149001											
FAM48B1	100130302	broad.mit.edu	37	chrX	24381889	24381889	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggtagaagacccttttGgatttgcgttggaagctggc	15	6	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24381889	A	A	24381889	3	1	185	1	0	0	0	0	1	0	0	0	5624	1349	47	4	1014	4	FAM48B1	23	24381889	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2369365	24381889	130888671	872	149002											
PCYT1B	9468	broad.mit.edu	37	chrX	24597373	24597373	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtgctcaataaacagcAgcactggtggtggtggtgtg	15	6	1	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24597373	T	T	24597373	1	4	185	0	1	0	0	0	0	0	0	0	11705	203	7	5		5	PCYT1B	23	24597373	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	215484	24597373	130673187	873	149003											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29972872	29972872	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgtgtagtcatcactTtttcatggaattttaatgtt	8	5	4	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29972872	G	G	29972872	1	3	185	0	1	0	0	0	0	0	0	0	7731	1856	64	5		5	IL1RAPL1	23	29972872	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	5375499	29972872	125297688	874	149004											
MAGEB2	4113	broad.mit.edu	37	chrX	30237624	30237624	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcccaacccattacgaagaAgctttgaaagatgaagagaa	8	8	0	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30237624	T	T	30237624	3	4	185	1	0	0	0	0	1	0	0	0	9268	69	3	5	929	5	MAGEB2	23	30237624	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	264752	30237624	125032936	875	149005											
FAM47A	158724	broad.mit.edu	37	chrX	34148608	34148608	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatctatattgaagagagtcAgaaacgcactcttttgtgct	8	7	3	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34148608	T	T	34148608	2	4	185	1	0	0	0	0	0	0	0	1	5620	175	7	5		5	FAM47A	23	34148608	Silent	SNP	A	TCGA-64-1678-01A-01W-0928-08	3910984	34148608	121121952	876	149006											
TSPAN7	7102	broad.mit.edu	37	chrX	38525426	38525426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggcaaacttactctgGgcacctatatctcccttatt	7	12	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38525426	T	T	38525426	3	4	185	1	0	0	0	0	1	0	0	0	16777	1232	43	2	139	2	TSPAN7	23	38525426	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	4376818	38525426	116745134	877	149007											
MED14	9282	broad.mit.edu	37	chrX	40573738	40573738	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaataatacaatccaatccAgtgccaaaacctttagtttt	3	9	0	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40573738	T	T	40573738	1	4	185	0	1	0	0	0	0	0	0	0	9525	203	7	5		5	MED14	23	40573738	Intron	SNP	A	TCGA-64-1678-01A-01W-0928-08	2048312	40573738	114696822	878	149008											
DUSP21	63904	broad.mit.edu	37	chrX	44704038	44704038	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgttagtaaagaaaaccGgatggtgccttgttaaaggg	12	4	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44704038	A	A	44704038	1	1	185	0	1	0	0	0	0	0	0	0	4860	1131	39	4		4	DUSP21	23	44704038	3'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	4130300	44704038	110566522	879	149009											
ZNF157	7712	broad.mit.edu	37	chrX	47271905	47271905	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgcaggaaagccttccatGagaaaacaggctttgttaga	11	7	0	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47271905	T	T	47271905	4	4	185	1	0	0	0	0	0	1	0	0	17863	1291	45	3	447	3	ZNF157	23	47271905	Nonsense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	2567867	47271905	107998655	880	149010											
FTSJ1	24140	broad.mit.edu	37	chrX	48340805	48340805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaagacccagatttcaacCagctggatggtcccacccgc	8	16	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48340805	A	A	48340805	3	1	185	1	0	0	0	0	1	0	0	0	6147	595	21	2	704	2	FTSJ1	23	48340805	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	1068900	48340805	106929755	881	149011											
GAGE1	2543	broad.mit.edu	37	chrX	49370572	49370572	+	Intron	DEL	C	-	-													atctgttgctctgtaatgttCccaactgttttgttttgttt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49370572	-	-	49370572	6	5	185	0	1	1	0	1	0	0	0	0	6246	870	30	0		0	GAGE1	23	49370572	Intron	DEL	C	TCGA-64-1678-01A-01W-0928-08	1029767	49370572	105899988	882	149012											
NUDT10	170685	broad.mit.edu	37	chrX	51075776	51075776	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggcagcagctgcgtcggcGgcccacacagcagcgagagg	17	14	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51075776	C	C	51075776	1	2	185	0	1	0	0	0	0	0	0	0	10821	1131	39	4		4	NUDT10	23	51075776	5'UTR	SNP	G	TCGA-64-1678-01A-01W-0928-08	1705204	51075776	104194784	883	149013											
IQSEC2	23096	broad.mit.edu	37	chrX	53267522	53267522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagactgggcacctctgttGggactggtgcaaggtggctc	17	9	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53267522	T	T	53267522	1	4	185	0	1	0	0	0	0	0	0	0	7888	1363	47	2		2	IQSEC2	23	53267522	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2191746	53267522	102003038	884	149014											
FGD1	2245	broad.mit.edu	37	chrX	54476618	54476618	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggaccattctggttagCtgtgagttttgagggagaat	13	6	1	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54476618	A	A	54476618	1	1	185	0	1	0	0	0	0	0	0	0	5889	812	28	3		3	FGD1	23	54476618	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1209096	54476618	100793942	885	149015											
GNL3L	54552	broad.mit.edu	37	chrX	54581130	54581130	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaccaccgtgtataaggtacCtgtcatctttgttcatggca	8	10	3	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54581130	G	G	54581130	1	3	185	0	1	0	0	0	0	0	0	0	6602	696	24	4		4	GNL3L	23	54581130	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	104512	54581130	100689430	886	149016											
ZXDB	158586	broad.mit.edu	37	chrX	57620678	57620678	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcagtaagctaacagtgGacacagatgctctgactcct	9	12	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57620678	T	T	57620678	3	4	185	1	0	0	0	0	1	0	0	0	18380	1174	41	3	2199	3	ZXDB	23	57620678	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	3039548	57620678	97649882	887	149017											
ZXDA	7789	broad.mit.edu	37	chrX	57935364	57935364	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggtaatgctgtggcctttCagatgttcggccctcgtgaa	13	9	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57935364	T	T	57935364	2	4	185	1	0	0	0	0	0	0	0	1	18379	813	29	4		4	ZXDA	23	57935364	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	314686	57935364	97335196	888	149018											
FAM123B	139285	broad.mit.edu	37	chrX	63411404	63411404	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggcctccctggcatgaGcttctcgggcacgtgcctcc	13	16	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63411404	T	T	63411404	3	4	185	1	0	0	0	0	1	0	0	0	5469	971	34	3	1648	3	FAM123B	23	63411404	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	5476040	63411404	91859156	889	149019											
HEPH	9843	broad.mit.edu	37	chrX	65415100	65415100	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagggtttctagtaaatgtGggctctaggtggtaccatgt	13	6	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65415100	T	T	65415100	1	4	185	0	1	0	0	0	0	0	0	0	7121	1363	47	2		2	HEPH	23	65415100	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	2003696	65415100	89855460	890	149020											
TEX11	56159	broad.mit.edu	37	chrX	69964040	69964040	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctggcccagtagatttcTtatccatcttcccaatatca	4	12	4	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69964040	A	A	69964040	3	1	185	1	0	0	0	0	1	0	0	0	15896	1609	56	5	2139	5	TEX11	23	69964040	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	4548940	69964040	85306520	891	149021											
NLGN3	54413	broad.mit.edu	37	chrX	70375176	70375176	+	Silent	SNP	C	T	T													ctcgccagttatggcaatgtCatcgtcatcaccctcaacta							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70375176	T	T	70375176	2	4	185	1	0	0	0	0	0	0	0	1	10558	813	29	4		4	NLGN3	23	70375176	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	411136	70375176	84895384	892	149022	645	3									
NLGN3	54413	broad.mit.edu	37	chrX	70375182	70375182	+	Silent	SNP	C	T	T													agttatggcaatgtcatcgtCatcaccctcaactatcgggt							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70375182	T	T	70375182	2	4	185	1	0	0	0	0	0	0	0	1	10558	813	29	4		4	NLGN3	23	70375182	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	6	70375182	84895378	893	149023	645	3									
NLGN3	54413	broad.mit.edu	37	chrX	70375185	70375185	+	Silent	SNP	C	T	T													tatggcaatgtcatcgtcatCaccctcaactatcgggttgg							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70375185	T	T	70375185	2	4	185	1	0	0	0	0	0	0	0	1	10558	816	29	4		4	NLGN3	23	70375185	Silent	SNP	C	TCGA-64-1678-01A-01W-0928-08	3	70375185	84895375	894	149024	645	3									
NONO	4841	broad.mit.edu	37	chrX	70518384	70518384	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacttaggaggttaatggctCtgatttccttttttgtttgg	11	5	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70518384	A	A	70518384	1	1	185	0	1	0	0	0	0	0	0	0	10629	928	32	3		3	NONO	23	70518384	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	143199	70518384	84752176	895	149025											
MAGEE2	139599	broad.mit.edu	37	chrX	75003586	75003586	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggaatgctttctccctAcatccacactaaatcttcga	5	12	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75003586	G	G	75003586	3	3	185	1	0	0	0	0	1	0	0	0	9278	391	14	5	274	5	MAGEE2	23	75003586	Missense_Mutation	SNP	A	TCGA-64-1678-01A-01W-0928-08	4485202	75003586	80266974	896	149026											
ATRX	546	broad.mit.edu	37	chrX	76875838	76875838	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaaataccaatattctacTgcataatcagagatattaac	5	7	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76875838	A	A	76875838	1	1	185	0	1	0	0	0	0	0	0	0	1212	1595	55	5		5	ATRX	23	76875838	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1872252	76875838	78394722	897	149027											
CYLC1	1538	broad.mit.edu	37	chrX	83129105	83129105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaaaaggatgaaaagaaGgggaagaaagattcaaagaa	13	1	1	5			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83129105	T	T	83129105	3	4	185	1	0	0	0	0	1	0	0	0	4174	991	35	2	1403	2	CYLC1	23	83129105	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	6253267	83129105	72141455	898	149028											
CPXCR1	53336	broad.mit.edu	37	chrX	88009116	88009117	+	Missense_Mutation	DNP	GG	TT	TT													tagattccgtgctattgtgaGgtctgtgctctttgtgtcac							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	88009117	TT	TT	88009116	3	4	185	1	0	0	0	0	1	0	0	0	3868	1000	35	2	703	2	CPXCR1	23	88009116	Missense_Mutation	DNP	GG	TCGA-64-1678-01A-01W-0928-08	4880011	88009116	67261444	899	149029											
NXF5	55998	broad.mit.edu	37	chrX	101096608	101096608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctggcctgtcctcctgCccaaagactaagtacaggga	9	15	0	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101096608	A	A	101096608	1	1	185	0	1	0	0	0	0	0	0	0	10881	754	26	3		3	NXF5	23	101096608	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	13087492	101096608	54173952	900	149030											
NXF5	55998	broad.mit.edu	37	chrX	101097668	101097668	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtgtgagccaccgtgccTggcccagaatattctaccta	10	13	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101097668	A	A	101097668	1	1	185	0	1	0	0	0	0	0	0	0	10881	1595	55	5		5	NXF5	23	101097668	Intron	SNP	T	TCGA-64-1678-01A-01W-0928-08	1060	101097668	54172892	901	149031											
TCEAL6	158931	broad.mit.edu	37	chrX	101395859	101395859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccttagctcctcctgagCccttgacacatctccacatt	4	16	1	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101395859	A	A	101395859	3	1	185	1	0	0	0	0	1	0	0	0	15797	739	26	3	110	3	TCEAL6	23	101395859	Missense_Mutation	SNP	C	TCGA-64-1678-01A-01W-0928-08	298191	101395859	53874701	902	149032											
TCEAL3	85012	broad.mit.edu	37	chrX	102864437	102864437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtggagatgtgtcaaggGctcaagaggagctaaggaaa	15	4	2	2			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102864437	T	T	102864437	3	4	185	1	0	0	0	0	1	0	0	0	15794	1203	42	3	447	3	TCEAL3	23	102864437	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	1468578	102864437	52406123	903	149033											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104651667	104651667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtccaacgtgaagggagctGtgtttgaagagatgctgaca	15	6	0	4			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104651667	A	A	104651667	1	1	185	0	1	0	0	0	0	0	0	0	7732	1392	48	4		4	IL1RAPL2	23	104651667	Intron	SNP	G	TCGA-64-1678-01A-01W-0928-08	1787230	104651667	50618893	904	149034											
KLHL13	90293	broad.mit.edu	37	chrX	117044073	117044074	+	Intron	INS	-	A	A													agtgacctattaagccaattINSaaaaaaaattaaaacatgac							TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117044074	A	A	117044073	6	5	185	0	1	1	1	0	0	0	0	0	8440	1769	61	0		0	KLHL13	23	117044073	Intron	INS	-	TCGA-64-1678-01A-01W-0928-08	12392406	117044073	38226487	905	149035											
CT47B1	643311	broad.mit.edu	37	chrX	120008777	120008777	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccacggcctcctctgaggTcggttcctctgcggccggtt	14	15	2	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120008777	A	A	120008777	3	1	185	1	0	0	0	0	1	0	0	0	4023	1667	58	5	159	5	CT47B1	23	120008777	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	2964704	120008777	35261783	906	149036											
ODZ1	10178	broad.mit.edu	37	chrX	123518364	123518364	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgtcacatattaccatGcggcccacattatcatattg	5	11	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123518364	T	T	123518364	2	4	185	1	0	0	0	0	0	0	0	1	10929	1306	46	3		3	ODZ1	23	123518364	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	3509587	123518364	31752196	907	149037											
RAP2C	57826	broad.mit.edu	37	chrX	131351048	131351048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagactgttgattaaccagGctataaaccaggatgaaacc	8	8	0	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131351048	T	T	131351048	3	4	185	1	0	0	0	0	1	0	0	0	13150	1194	42	3	310	3	RAP2C	23	131351048	Missense_Mutation	SNP	G	TCGA-64-1678-01A-01W-0928-08	7832684	131351048	23919512	908	149038											
GPC4	2239	broad.mit.edu	37	chrX	132458605	132458605	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaggaaaaaCgagagttttcagtgtttaaa	7	2	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132458605	T	T	132458605	1	4	185	0	1	0	0	0	0	0	0	0	6665	551	19	4		4	GPC4	23	132458605	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	1107557	132458605	22811955	909	149039											
SPANXC	64663	broad.mit.edu	37	chrX	140335779	140335779	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcttttcacgttcctcctGtagcgaaccactagtatggt	8	11	2	0			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140335779	A	A	140335779	2	1	185	1	0	0	0	0	0	0	0	1	15103	1372	48	4		4	SPANXC	23	140335779	Silent	SNP	G	TCGA-64-1678-01A-01W-0928-08	7877174	140335779	14934781	910	149040											
GABRE	2564	broad.mit.edu	37	chrX	151128011	151128011	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaggtcagagttgtaacctCgaaactgaagggtctgcatg	13	7	2	3			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151128011	T	T	151128011	1	4	185	0	1	0	0	0	0	0	0	0	6230	899	31	4		4	GABRE	23	151128011	Intron	SNP	C	TCGA-64-1678-01A-01W-0928-08	10792232	151128011	4142549	911	149041											
TMLHE	55217	broad.mit.edu	37	chrX	154774874	154774874	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggaagggccggatataTgactcctcccttcagcaagt	11	11	1	1			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154774874	A	A	154774874	3	1	185	1	0	0	0	0	1	0	0	0	16355	1464	51	5	1369	5	TMLHE	23	154774874	Missense_Mutation	SNP	T	TCGA-64-1678-01A-01W-0928-08	3646863	154774874	495686	912	149042											
AGRN	375790	broad.mit.edu	37	chr1	957721	957721	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccactggggacaccaggatCttctttgtgaaccctgcacc	9	14	2	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	957721	T	T	957721	2	4	186	1	0	0	0	0	0	0	0	1	397	903	32	4		4	AGRN	1	957721	Silent	SNP	C	TCGA-64-1680-01A-02W-0928-08		957721	248292900	1	149043											
TP73	7161	broad.mit.edu	37	chr1	3599647	3599647	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagacagcacctacttcgAccttccccagtcaagccggg	8	17	1	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3599647	C	C	3599647	3	2	186	1	0	0	0	0	1	0	0	0	16517	275	10	5	95	5	TP73	1	3599647	Missense_Mutation	SNP	A	TCGA-64-1680-01A-02W-0928-08	2641926	3599647	245650974	2	149044											
UBR4	23352	broad.mit.edu	37	chr1	19491596	19491596	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatggcttcaaagcaagTtttcaacttccttccaaact	6	10	2	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19491596	G	G	19491596	1	3	186	0	1	0	0	0	0	0	0	0	17030	1740	60	5		5	UBR4	1	19491596	Intron	SNP	T	TCGA-64-1680-01A-02W-0928-08	15891949	19491596	229759025	3	149045											
BAI2	576	broad.mit.edu	37	chr1	32207725	32207725	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtggcccaggctgggcccGccacgctgcacttccggctg	14	16	0	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32207725	A	A	32207725	3	1	186	1	0	0	0	0	1	0	0	0	1304	1087	38	4	3515	4	BAI2	1	32207725	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	12716129	32207725	217042896	4	149046											
IQCC	55721	broad.mit.edu	37	chr1	32672097	32672099	+	Intron	DEL	TCT	-	-													ccctggggctctcacatctcTcttgtttctcagaaggcaaa							TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32672099	-	-	32672097	6	5	186	0	1	1	0	1	0	0	0	0	7874	1566	54	0		0	IQCC	1	32672097	Intron	DEL	TCT	TCGA-64-1680-01A-02W-0928-08	464372	32672097	216578524	5	149047											
BMP8B	656	broad.mit.edu	37	chr1	40226045	40226045	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctgcttctgaggggccCgatccagatgagaagggtgg	15	9	1	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40226045	T	T	40226045	1	4	186	0	1	0	0	0	0	0	0	0	1473	667	23	4		4	BMP8B	1	40226045	3'UTR	SNP	C	TCGA-64-1680-01A-02W-0928-08	7553948	40226045	209024576	6	149048											
MAGOH	4116	broad.mit.edu	37	chr1	53699330	53699330	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatgtacataagcctgaaCgcaagttaaaaaacaaaatg	6	6	0	1	rs112792686		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53699330	T	T	53699330	1	4	186	0	1	0	0	0	0	0	0	0	9286	551	19	4		4	MAGOH	1	53699330	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	13473285	53699330	195551291	7	149049											
NBPF10	100132406	broad.mit.edu	37	chr1	145311493	145311493	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagagcacaaatacagagTgtcctttgactccctcatca	7	12	2	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145311493	C	C	145311493	1	2	186	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145311493	Intron	SNP	T	TCGA-64-1680-01A-02W-0928-08	91612163	145311493	103939128	8	149050											
ZNF687	57592	broad.mit.edu	37	chr1	151260444	151260444	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaccgtcggagcatgcgcatCgaggtcacctgcaaccactg	12	14	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151260444	G	G	151260444	3	3	186	1	0	0	0	0	1	0	0	0	18219	874	31	4	1679	4	ZNF687	1	151260444	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	5948951	151260444	97990177	9	149051											
ARHGEF2	9181	broad.mit.edu	37	chr1	155932776	155932776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaagttccgggtgctgCcagggcacagggcctggcgt	16	11	0	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155932776	A	A	155932776	3	1	186	1	0	0	0	0	1	0	0	0	905	739	26	3	2097	3	ARHGEF2	1	155932776	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	4672332	155932776	93317845	10	149052											
TADA1	117143	broad.mit.edu	37	chr1	166845370	166845370	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcacccgcgtgttggccTggacgctgtgctagggcagc	16	12	0	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166845370	C	C	166845370	1	2	186	0	1	0	0	0	0	0	0	0	15628	1595	55	5		5	TADA1	1	166845370	Intron	SNP	T	TCGA-64-1680-01A-02W-0928-08	10912594	166845370	82405251	11	149053											
PDC	5132	broad.mit.edu	37	chr1	186413131	186413131	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcattcaacatcttcttcttCtattttggtatgctctagga	5	9	7	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186413131	A	A	186413131	4	1	186	1	0	0	0	0	0	1	0	0	11708	922	32	3	23	3	PDC	1	186413131	Nonsense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	19567761	186413131	62837490	12	149054											
FAM5C	339479	broad.mit.edu	37	chr1	190250665	190250665	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggcacaagcacacacaggCacaaataggttcaaagagcc	9	11	1	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190250665	T	T	190250665	1	4	186	0	1	0	0	0	0	0	0	0	5645	725	25	4		4	FAM5C	1	190250665	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	3837534	190250665	58999956	13	149055											
PTPRC	5788	broad.mit.edu	37	chr1	198677397	198677397	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagatttcagtgtggtaagaAtataacattgaccagagaat	9	5	1	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198677397	T	T	198677397	1	4	186	0	1	0	0	0	0	0	0	0	12905	116	4	5		5	PTPRC	1	198677397	Intron	SNP	A	TCGA-64-1680-01A-02W-0928-08	8426732	198677397	50573224	14	149056											
PIK3C2B	5287	broad.mit.edu	37	chr1	204410669	204410669	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtttgagggggacagcaTtggagttgaagtaggaacag	17	3	0	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	204410669	C	C	204410669	3	2	186	1	0	0	0	0	1	0	0	0	12005	1493	52	5	1777	5	PIK3C2B	1	204410669	Missense_Mutation	SNP	T	TCGA-64-1680-01A-02W-0928-08	5733272	204410669	44839952	15	149057											
CR1L	1379	broad.mit.edu	37	chr1	207870819	207870819	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagttattttcacacaaTtagcagtactttgtttctct	5	7	2	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207870819	C	C	207870819	1	2	186	0	1	0	0	0	0	0	0	0	3873	1508	52	5		5	CR1L	1	207870819	Intron	SNP	T	TCGA-64-1680-01A-02W-0928-08	3460150	207870819	41379802	16	149058											
CCT4	10575	broad.mit.edu	37	chr2	62104098	62104098	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactgaataagcccaatcTtggccttttcaactctggtt	6	10	3	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62104098	G	G	62104098	3	3	186	1	0	0	0	0	1	0	0	0	2985	1609	56	5	917	5	CCT4	2	62104098	Missense_Mutation	SNP	T	TCGA-64-1680-01A-02W-0928-08		62104098	181095275	17	149059											
SCTR	6344	broad.mit.edu	37	chr2	120209616	120209616	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggatcacaggaccacgaatGatccaccagatggatgcgtt	11	10	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120209616	C	C	120209616	3	2	186	1	0	0	0	0	1	0	0	0	14056	1280	45	4	451	4	SCTR	2	120209616	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	58105518	120209616	122989757	18	149060											
TMEM163	81615	broad.mit.edu	37	chr2	135215671	135215671	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtccaggtaccagaccgcCgagtcatgcttgaacacttc	9	15	1	2	rs17852356		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135215671	G	G	135215671	2	3	186	1	0	0	0	0	0	0	0	1	16201	639	23	4		4	TMEM163	2	135215671	Silent	SNP	C	TCGA-64-1680-01A-02W-0928-08	15006055	135215671	107983702	19	149061											
LRP1B	53353	broad.mit.edu	37	chr2	141072616	141072616	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacacctcaaatcacctttCtcatttaaaatgcatcttcc	2	13	4	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141072616	G	G	141072616	3	3	186	1	0	0	0	0	1	0	0	0	9042	912	32	4	1142	4	LRP1B	2	141072616	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	5856945	141072616	102126757	20	149062											
WDSUB1	151525	broad.mit.edu	37	chr2	160139521	160139521	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagccaagagggaaaaggaGaaggcacagcagttgacatc	14	7	0	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160139521	A	A	160139521	2	1	186	1	0	0	0	0	0	0	0	1	17468	933	33	4		4	WDSUB1	2	160139521	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08	19066905	160139521	83059852	21	149063											
ITGAV	3685	broad.mit.edu	37	chr2	187541828	187541828	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataaattttatgaaatacaAtttaaatgttcttagtggta	6	2	1	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187541828	G	G	187541828	1	3	186	0	1	0	0	0	0	0	0	0	7958	116	4	5		5	ITGAV	2	187541828	Intron	SNP	A	TCGA-64-1680-01A-02W-0928-08	27402307	187541828	55657545	22	149064											
DNAH7	56171	broad.mit.edu	37	chr2	196664038	196664038	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctggtcatcagcaaatttTagaagggcagccatgggatc	11	9	2	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196664038	A	A	196664038	2	1	186	1	0	0	0	0	0	0	0	1	4646	1741	61	5		5	DNAH7	2	196664038	Silent	SNP	T	TCGA-64-1680-01A-02W-0928-08	9122210	196664038	46535335	23	149065											
PAX3	5077	broad.mit.edu	37	chr2	223066081	223066081	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attcttcatatctaggctgcGaagaccagaaacagggccag	10	10	3	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223066081	A	A	223066081	1	1	186	0	1	0	0	0	0	0	0	0	11574	1073	37	4		4	PAX3	2	223066081	3'UTR	SNP	G	TCGA-64-1680-01A-02W-0928-08	26402043	223066081	20133292	24	149066											
CAPN10	11132	broad.mit.edu	37	chr2	241531406	241531406	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggcggatgccctggtggAcctgaccggcggcctggcag	19	12	0	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241531406	C	C	241531406	3	2	186	1	0	0	0	0	1	0	0	0	2649	275	10	5	541	5	CAPN10	2	241531406	Missense_Mutation	SNP	A	TCGA-64-1680-01A-02W-0928-08	18465325	241531406	1667967	25	149067											
ATP2B2	491	broad.mit.edu	37	chr3	10401606	10401606	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccccttgctgtacatgcGgaagctctcgtcgggcagct	12	14	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10401606	A	A	10401606	3	1	186	1	0	0	0	0	1	0	0	0	1144	1116	39	4	1914	4	ATP2B2	3	10401606	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08		10401606	187620824	26	149068											
FAM19A4	151647	broad.mit.edu	37	chr3	68802078	68802078	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccgggaagcaagagcacttGaccgtttgtgaccgctcttc	11	13	1	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68802078	C	C	68802078	2	2	186	1	0	0	0	0	0	0	0	1	5581	1277	45	4		4	FAM19A4	3	68802078	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08	58400472	68802078	129220352	27	149069											
TBC1D23	55773	broad.mit.edu	37	chr3	100009497	100009497	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgagcctgagctttgttcTtatcttgatacaaagaaaat	7	7	2	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100009497	G	G	100009497	2	3	186	1	0	0	0	0	0	0	0	1	15732	1596	56	5		5	TBC1D23	3	100009497	Silent	SNP	T	TCGA-64-1680-01A-02W-0928-08	31207419	100009497	98012933	28	149070											
HHLA2	11148	broad.mit.edu	37	chr3	108076844	108076844	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatctgagctcctcacaaaAtacaattatcaatgaatccc	3	12	3	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108076844	G	G	108076844	3	3	186	1	0	0	0	0	1	0	0	0	7162	101	4	5	853	5	HHLA2	3	108076844	Missense_Mutation	SNP	A	TCGA-64-1680-01A-02W-0928-08	8067347	108076844	89945586	29	149071											
SEC61A1	29927	broad.mit.edu	37	chr3	127785935	127785935	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaacctttatgtcatctccCaaatgctctcagctcgcttc	4	16	3	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127785935	T	T	127785935	4	4	186	1	0	0	0	0	0	1	0	0	14113	595	21	4	950	4	SEC61A1	3	127785935	Nonsense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	19709091	127785935	70236495	30	149072											
STIM2	57620	broad.mit.edu	37	chr4	26921325	26921325	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcatttctgtttctggtcttCaattttctctttcctcatgt	5	10	6	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26921325	T	T	26921325	1	4	186	0	1	0	0	0	0	0	0	0	15402	841	29	4		4	STIM2	4	26921325	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08		26921325	164232951	31	149073											
MTTP	4547	broad.mit.edu	37	chr4	100532564	100532564	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattctaaggagaagtaaccTgaacatctttcagtacattg	7	8	3	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100532564	C	C	100532564	3	2	186	1	0	0	0	0	1	0	0	0	10058	1580	55	5	1997	5	MTTP	4	100532564	Missense_Mutation	SNP	T	TCGA-64-1680-01A-02W-0928-08	73611239	100532564	90621712	32	149074											
TACR3	6870	broad.mit.edu	37	chr4	104640578	104640578	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacgccagggaccagagcgcGatgcgccaggacggctgcac	15	14	0	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104640578	A	A	104640578	2	1	186	1	0	0	0	0	0	0	0	1	15626	1048	37	4		4	TACR3	4	104640578	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08	4108014	104640578	86513698	33	149075											
BDP1	55814	broad.mit.edu	37	chr5	70837459	70837459	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaggaacaaagttccagAgaagaaataagtttaatgga	11	3	0	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70837459	C	C	70837459	3	2	186	1	0	0	0	0	1	0	0	0	1400	301	11	5	6315	5	BDP1	5	70837459	Missense_Mutation	SNP	A	TCGA-64-1680-01A-02W-0928-08		70837459	110077801	34	149076											
IQGAP2	10788	broad.mit.edu	37	chr5	75888773	75888773	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagtaatggatcgtatgaagGaaattgatatttccgtaaga	10	3	0	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75888773	C	C	75888773	1	2	186	0	1	0	0	0	0	0	0	0	7885	1189	41	4		4	IQGAP2	5	75888773	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	5051314	75888773	105026487	35	149077											
PCDHGA11	56105	broad.mit.edu	37	chr5	140801620	140801620	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccagacgagggaatcaacGgggaagtaatgtattcattt	11	6	2	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140801620	A	A	140801620	3	1	186	1	0	0	0	0	1	0	0	0	11646	1116	39	4	828	4	PCDHGA11	5	140801620	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	64912847	140801620	40113640	36	149078											
GEMIN5	25929	broad.mit.edu	37	chr5	154311863	154311863	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgaagacagaacagagtCtctagtaaacattttggctt	8	6	1	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154311863	T	T	154311863	1	4	186	0	1	0	0	0	0	0	0	0	6395	928	32	4		4	GEMIN5	5	154311863	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	13510243	154311863	26603397	37	149079											
WWC1	23286	broad.mit.edu	37	chr5	167850949	167850949	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggctggtgatgccttcctCaactccttggagtttgaaga	11	10	1	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167850949	T	T	167850949	2	4	186	1	0	0	0	0	0	0	0	1	17538	813	29	4		4	WWC1	5	167850949	Silent	SNP	C	TCGA-64-1680-01A-02W-0928-08	13539086	167850949	13064311	38	149080											
FAM153B	202134	broad.mit.edu	37	chr5	175533629	175533629	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatctctttgtttaggtttGaaatcttagtgttgtaaagg	9	4	3	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175533629	C	C	175533629	1	2	186	0	1	0	0	0	0	0	0	0	5507	1305	45	4		4	FAM153B	5	175533629	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	7682680	175533629	5381631	39	149081											
HK3	3101	broad.mit.edu	37	chr5	176318466	176318466	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggcctgtcccctcagcGcctgctccatggaacccaag	11	17	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176318466	A	A	176318466	3	1	186	1	0	0	0	0	1	0	0	0	7259	1087	38	4	2657	4	HK3	5	176318466	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	784837	176318466	4596794	40	149082											
RUFY1	80230	broad.mit.edu	37	chr5	178989683	178989683	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagtgagtgagaagtagttCtgccaatttgatgattttaa	10	3	1	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178989683	T	T	178989683	1	4	186	0	1	0	0	0	0	0	0	0	13849	928	32	4		4	RUFY1	5	178989683	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	2671217	178989683	1925577	41	149083											
PPP1R10	5514	broad.mit.edu	37	chr6	30574350	30574350	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgggtctcagccttcacctCtgtcaaaggtcgctcaggaa	10	14	5	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30574350	G	G	30574350	3	3	186	1	0	0	0	0	1	0	0	0	12453	922	32	4	2345	4	PPP1R10	6	30574350	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08		30574350	140540717	42	149084											
STK38	11329	broad.mit.edu	37	chr6	36483102	36483103	+	Intron	INS	-	C	C													gtgcatagttcatgccaatgINScccccccaataccttgctgt							TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36483103	C	C	36483102	6	5	186	0	1	1	1	0	0	0	0	0	15421	1334	46	0		0	STK38	6	36483102	Intron	INS	-	TCGA-64-1680-01A-02W-0928-08	5908752	36483102	134631965	43	149085											
HTR1B	3351	broad.mit.edu	37	chr6	78172847	78172847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaagcaggtcggtgaccgCcagagaggcgatcaggtagt	15	10	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78172847	A	A	78172847	3	1	186	1	0	0	0	0	1	0	0	0	7507	739	26	3	902	3	HTR1B	6	78172847	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	41689745	78172847	92942220	44	149086											
SNAP91	9892	broad.mit.edu	37	chr6	84270599	84270599	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcaccattccaaatcctgctCcaggttgtccaaccgatggg	8	14	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84270599	G	G	84270599	3	3	186	1	0	0	0	0	1	0	0	0	14947	855	30	4	225	4	SNAP91	6	84270599	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	6097752	84270599	86844468	45	149087											
LAMA2	3908	broad.mit.edu	37	chr6	129691179	129691179	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaaagcagatagattaTgtcaatgaaggaaaattact	8	4	2	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129691179	C	C	129691179	1	2	186	0	1	0	0	0	0	0	0	0	8678	1479	51	5		5	LAMA2	6	129691179	Intron	SNP	T	TCGA-64-1680-01A-02W-0928-08	45420580	129691179	41423888	46	149088											
FBXO30	84085	broad.mit.edu	37	chr6	146126568	146126568	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagtgagctggaaggttttGaagtgccatctgatgatgcc	13	7	1	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146126568	A	A	146126568	3	1	186	1	0	0	0	0	1	0	0	0	5797	1294	45	4	1271	4	FBXO30	6	146126568	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	16435389	146126568	24988499	47	149089											
SCRN1	9805	broad.mit.edu	37	chr7	30008662	30008662	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggaaggcaacaaaacagtAacttggaggagctgcagcca	13	8	0	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30008662	G	G	30008662	3	3	186	1	0	0	0	0	1	0	0	0	14051	362	13	5	1250	5	SCRN1	7	30008662	Missense_Mutation	SNP	A	TCGA-64-1680-01A-02W-0928-08		30008662	129130001	48	149090											
STAG3	10734	broad.mit.edu	37	chr7	99796183	99796183	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgaggcctggcctctgccGcaggcgaatttctgtactgg	13	12	2	0	rs149765159		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99796183	A	A	99796183	3	1	186	1	0	0	0	0	1	0	0	0	15362	1087	38	4	1376	4	STAG3	7	99796183	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	69787521	99796183	59342480	49	149091											
LRCH4	4034	broad.mit.edu	37	chr7	100174663	100174663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggaattagagggatgatGgtcataggaagaggagtggg	19	1	1	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100174663	A	A	100174663	1	1	186	0	1	0	0	0	0	0	0	0	9022	1363	47	4		4	LRCH4	7	100174663	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	378480	100174663	58964000	50	149092											
TFR2	7036	broad.mit.edu	37	chr7	100229865	100229865	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctcccagaaaaaaaccCgattcataagggcaggagaa	8	11	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100229865	T	T	100229865	1	4	186	0	1	0	0	0	0	0	0	0	15934	667	23	4		4	TFR2	7	100229865	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	55202	100229865	58908798	51	149093											
ZAN	7455	broad.mit.edu	37	chr7	100348589	100348589	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggatctgggggcgccAccagtgctgaagaggtggaa	18	9	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100348589	C	C	100348589	1	2	186	0	1	0	0	0	0	0	0	0	17640	174	6	5		5	ZAN	7	100348589	Intron	SNP	A	TCGA-64-1680-01A-02W-0928-08	118724	100348589	58790074	52	149094											
COG5	10466	broad.mit.edu	37	chr7	107013191	107013191	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaacctgaagagctgttccGacttgagttggattcttaaa	9	7	1	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107013191	A	A	107013191	2	1	186	1	0	0	0	0	0	0	0	1	3693	1045	37	4		4	COG5	7	107013191	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08	6664602	107013191	52125472	53	149095											
LRGUK	136332	broad.mit.edu	37	chr7	133943059	133943059	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcattgtttcggttctgtcCgtggtcaaaagaattgcctt	9	8	3	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133943059	T	T	133943059	3	4	186	1	0	0	0	0	1	0	0	0	9030	652	23	4	2323	4	LRGUK	7	133943059	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	26929868	133943059	25195604	54	149096											
SLC13A4	26266	broad.mit.edu	37	chr7	135377051	135377051	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgagggggttgttcttaagGaggaaatgatatcacttact	13	4	2	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135377051	C	C	135377051	1	2	186	0	1	0	0	0	0	0	0	0	14507	1189	41	4		4	SLC13A4	7	135377051	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	1433992	135377051	23761612	55	149097											
JHDM1D	80853	broad.mit.edu	37	chr7	139791810	139791810	+	Frame_Shift_Del	DEL	C	-	-													tgctgtccacataattcctaCtttgtaccctctgactaatt							TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139791810	-	-	139791810	7	5	186	1	0	1	0	1	0	0	0	0	8018	565	20	0	308	0	JHDM1D	7	139791810	Frame_Shift_Del	DEL	C	TCGA-64-1680-01A-02W-0928-08	4414759	139791810	19346853	56	149098											
ST18	9705	broad.mit.edu	37	chr8	53071617	53071617	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggctctgggtgtgggcGcctgcactaggcagtcgatt	16	11	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53071617	A	A	53071617	2	1	186	1	0	0	0	0	0	0	0	1	15330	1074	38	4		4	ST18	8	53071617	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08		53071617	93292405	57	149099											
SULF1	23213	broad.mit.edu	37	chr8	70570723	70570723	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccactaatgattcaccttCttctctcttttcacagagga	4	13	5	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70570723	T	T	70570723	1	4	186	0	1	0	0	0	0	0	0	0	15488	928	32	4		4	SULF1	8	70570723	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	17499106	70570723	75793299	58	149100											
FAM166B	730112	broad.mit.edu	37	chr9	35563755	35563755	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcggggagcgctaagtggGagtcttaccctgggatataa	15	7	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35563755	A	A	35563755	1	1	186	0	1	0	0	0	0	0	0	0	5527	1189	41	4		4	FAM166B	9	35563755	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08		35563755	105649676	59	149101											
GATA3	2625	broad.mit.edu	37	chr10	8106012	8106012	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccactgtggcggcgagatGgcacgggacactacctgtgc	14	14	0	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8106012	A	A	8106012	3	1	186	1	0	0	0	0	1	0	0	0	6317	1348	47	4	845	4	GATA3	10	8106012	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08		8106012	127428735	60	149102											
CELF2	10659	broad.mit.edu	37	chr10	11047331	11047331	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctgaactggcttttgttGagactatcagtatagaagca	9	7	2	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11047331	A	A	11047331	1	1	186	0	1	0	0	0	0	0	0	0	3246	1305	45	4		4	CELF2	10	11047331	5'UTR	SNP	G	TCGA-64-1680-01A-02W-0928-08	2941319	11047331	124487416	61	149103											
ITGA8	8516	broad.mit.edu	37	chr10	15697389	15697389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgatacgacaacggtatatCcaaaataagatgccatctgc	7	10	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15697389	A	A	15697389	3	1	186	1	0	0	0	0	1	0	0	0	7952	855	30	3	2306	3	ITGA8	10	15697389	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	4650058	15697389	119837358	62	149104											
CPEB3	22849	broad.mit.edu	37	chr10	93851587	93851587	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtattactatttccactcacCagctcgaaggggtcgtggaa	10	10	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93851587	T	T	93851587	3	4	186	1	0	0	0	0	1	0	0	0	3834	608	21	4	421	4	CPEB3	10	93851587	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	78154198	93851587	41683160	63	149105											
C10orf12	26148	broad.mit.edu	37	chr10	98742267	98742267	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttccgggggagtcagtgaaGatgtcatttctaggcctcat	12	8	4	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98742267	A	A	98742267	3	1	186	1	0	0	0	0	1	0	0	0	1600	942	33	4	1122	4	C10orf12	10	98742267	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	4890680	98742267	36792480	64	149106											
SORCS1	114815	broad.mit.edu	37	chr10	108427576	108427576	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgctgttaggaaagagcCgagaaaaacctttcactagg	11	8	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108427576	T	T	108427576	1	4	186	0	1	0	0	0	0	0	0	0	15044	667	23	4		4	SORCS1	10	108427576	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	9685309	108427576	27107171	65	149107											
DMBT1	1755	broad.mit.edu	37	chr10	124399784	124399786	+	In_Frame_Del	DEL	TCC	-	-													tgaacatttccttttatactTcctcatctttcttgtatcct							TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124399786	-	-	124399784	7	5	186	1	0	1	0	1	0	0	0	0	4617	1783	62	0	6990	0	DMBT1	10	124399784	In_Frame_Del	DEL	TCC	TCGA-64-1680-01A-02W-0928-08	15972208	124399784	11134963	66	149108											
OR51B5	282763	broad.mit.edu	37	chr11	5364346	5364346	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaatcttcactactcgagTattagtaagtacagaggtat	7	9	2	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5364346	A	A	5364346	3	1	186	1	0	0	0	0	1	0	0	0	11185	1638	57	5	533	5	OR51B5	11	5364346	Missense_Mutation	SNP	T	TCGA-64-1680-01A-02W-0928-08		5364346	129642170	67	149109											
CKAP5	9793	broad.mit.edu	37	chr11	46799939	46799939	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaagttcccctcactgaaTtcaaaaagaagacaacattc	5	10	2	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46799939	C	C	46799939	1	2	186	0	1	0	0	0	0	0	0	0	3476	1508	52	5		5	CKAP5	11	46799939	Intron	SNP	T	TCGA-64-1680-01A-02W-0928-08	41435593	46799939	88206577	68	149110											
MYO7A	4647	broad.mit.edu	37	chr11	76922837	76922837	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcctgtccccaggactgaGcccagccctgaccgccctgt	11	18	0	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76922837	A	A	76922837	1	1	186	0	1	0	0	0	0	0	0	0	10176	986	34	4		4	MYO7A	11	76922837	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	30122898	76922837	58083679	69	149111											
SORL1	6653	broad.mit.edu	37	chr11	121447981	121447981	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacctctctgtttatggtctCacctgcagaaatgcaccagt	7	13	2	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121447981	A	A	121447981	1	1	186	0	1	0	0	0	0	0	0	0	15048	841	29	3		3	SORL1	11	121447981	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	44525144	121447981	13558535	70	149112											
TULP3	7289	broad.mit.edu	37	chr12	3047432	3047432	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgtctgtgaagaacttccaGatagtccacaaaaatgaccg	9	10	1	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3047432	A	A	3047432	2	1	186	1	0	0	0	0	0	0	0	1	16901	933	33	4		4	TULP3	12	3047432	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08		3047432	130804463	71	149113											
ARID2	196528	broad.mit.edu	37	chr12	46246594	46246594	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagcaggagcagatccaaGcactgtagctaaagtagcaa	11	10	0	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46246594	C	C	46246594	3	2	186	1	0	0	0	0	1	0	0	0	917	971	34	4	4746	4	ARID2	12	46246594	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	43199162	46246594	87605301	72	149114											
TIMELESS	8914	broad.mit.edu	37	chr12	56811767	56811767	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgggtgctgccttcagCggctctttaccaacagcgtc	10	13	3	0	rs140801238	byFrequency	TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56811767	T	T	56811767	2	4	186	1	0	0	0	0	0	0	0	1	16027	755	27	4		4	TIMELESS	12	56811767	Silent	SNP	C	TCGA-64-1680-01A-02W-0928-08	10565173	56811767	77040128	73	149115											
CNOT2	4848	broad.mit.edu	37	chr12	70704789	70704789	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatgtttccacatcggtcaGaaaaagatgtaagttaatca	7	7	2	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70704789	A	A	70704789	3	1	186	1	0	0	0	0	1	0	0	0	3651	943	33	4	169	4	CNOT2	12	70704789	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	13893022	70704789	63147106	74	149116											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100466570	100466570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgcttttgggggaagaacGacattgttccgctgtagaga	13	7	0	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100466570	A	A	100466570	3	1	186	1	0	0	0	0	1	0	0	0	17095	1058	37	4	3029	4	UHRF1BP1L	12	100466570	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	29761781	100466570	33385325	75	149117											
UTP20	27340	broad.mit.edu	37	chr12	101674816	101674816	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgattagagatgcctaCatgcagcattcaaatagata	8	6	1	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101674816	T	T	101674816	1	4	186	0	1	0	0	0	0	0	0	0	17226	493	17	4		4	UTP20	12	101674816	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	1208246	101674816	32177079	76	149118											
RCBTB2	1102	broad.mit.edu	37	chr13	49076005	49076005	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgaggtggtcatcaggttCtaggagaataatgcaaatgc	13	5	3	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49076005	T	T	49076005	5	4	186	1	0	0	0	0	0	0	1	0	13280	927	32	4	554	4	RCBTB2	13	49076005	Splice_Site	SNP	C	TCGA-64-1680-01A-02W-0928-08		49076005	66093873	77	149119											
CDKL1	8814	broad.mit.edu	37	chr14	50796933	50796933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagaattaggttcaaaaCtgtgccatgcatttttttca	6	8	2	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50796933	A	A	50796933	1	1	186	0	1	0	0	0	0	0	0	0	3183	580	20	3		3	CDKL1	14	50796933	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08		50796933	56552607	78	149120											
ADAM21	8747	broad.mit.edu	37	chr14	70924778	70924778	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacgccaacagttggaatttGaagaggctgagaactcagct	11	9	1	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70924778	C	C	70924778	3	2	186	1	0	0	0	0	1	0	0	0	243	1291	45	4	564	4	ADAM21	14	70924778	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	20127845	70924778	36424762	79	149121											
RCOR1	23186	broad.mit.edu	37	chr14	103187590	103187590	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagagaaaatgaaaggttcGttaagctcataaggacatac	9	5	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103187590	A	A	103187590	1	1	186	0	1	0	0	0	0	0	0	0	13290	1160	40	4		4	RCOR1	14	103187590	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	32262812	103187590	4161950	80	149122											
THBS1	7057	broad.mit.edu	37	chr15	39881579	39881579	+	Intron	DEL	C	-	-													cagtcaactagacgagtaaaCcagaggacaggagagctgtc							TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39881579	-	-	39881579	6	5	186	0	1	1	0	1	0	0	0	0	15976	522	18	0		0	THBS1	15	39881579	Intron	DEL	C	TCGA-64-1680-01A-02W-0928-08		39881579	62649813	81	149123											
DLL4	54567	broad.mit.edu	37	chr15	41224584	41224584	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggctgtcgccacggcacCtgcagcactccctggcaatg	11	15	0	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41224584	A	A	41224584	2	1	186	1	0	0	0	0	0	0	0	1	4608	668	24	2		2	DLL4	15	41224584	Silent	SNP	C	TCGA-64-1680-01A-02W-0928-08	1343005	41224584	61306808	82	149124											
WDR72	256764	broad.mit.edu	37	chr15	53901835	53901835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttagagtattaaaaatGgataatggctcttaagatgg	9	3	2	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53901835	T	T	53901835	1	4	186	0	1	0	0	0	0	0	0	0	17449	1363	47	2		2	WDR72	15	53901835	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	12677251	53901835	48629557	83	149125											
LMAN1L	79748	broad.mit.edu	37	chr15	75115013	75115013	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcggtgccctgctccatGgacagtggactctgctccag	13	13	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75115013	A	A	75115013	3	1	186	1	0	0	0	0	1	0	0	0	8911	1349	47	4	1204	4	LMAN1L	15	75115013	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	21213178	75115013	27416379	84	149126											
MAN2A2	4122	broad.mit.edu	37	chr15	91449666	91449666	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccagatgaggccaattcCcactactttgcattgattga	8	10	0	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91449666	G	G	91449666	2	3	186	1	0	0	0	0	0	0	0	1	9307	610	22	4		4	MAN2A2	15	91449666	Silent	SNP	C	TCGA-64-1680-01A-02W-0928-08	16334653	91449666	11081726	85	149127											
GRIN2A	2903	broad.mit.edu	37	chr16	9858028	9858028	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctaagtggaaaccaggctCcttctcaccatctatagtgt	7	11	3	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9858028	A	A	9858028	4	1	186	1	0	0	0	0	0	1	0	0	6845	864	30	3	1025	3	GRIN2A	16	9858028	Nonsense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08		9858028	80496725	86	149128											
DNAH3	55567	broad.mit.edu	37	chr16	20996932	20996932	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtttcaggtcagtgatctCatcgtagattttttggtcac	9	8	4	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20996932	G	G	20996932	3	3	186	1	0	0	0	0	1	0	0	0	4643	835	29	4	5277	4	DNAH3	16	20996932	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	11138904	20996932	69357821	87	149129											
MAP2K4	6416	broad.mit.edu	37	chr17	12032655	12032655	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcatggcgagaatagtgagAtttacttggtcttagcagca	12	7	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12032655	G	G	12032655	1	3	186	0	1	0	0	0	0	0	0	0	9331	348	12	5		5	MAP2K4	17	12032655	Intron	SNP	A	TCGA-64-1680-01A-02W-0928-08		12032655	69162555	88	149130											
CDK12	51755	broad.mit.edu	37	chr17	37619172	37619172	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccccttacaaggagccttCggcctaccagtccagcaccc	7	19	0	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37619172	T	T	37619172	3	4	186	1	0	0	0	0	1	0	0	0	3158	893	31	4	850	4	CDK12	17	37619172	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	25586517	37619172	43576038	89	149131											
MTMR4	9110	broad.mit.edu	37	chr17	56573109	56573109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttggagggcacacctagCatggagtctggctgggcctg	15	11	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56573109	A	A	56573109	3	1	186	1	0	0	0	0	1	0	0	0	10040	710	25	3	1209	3	MTMR4	17	56573109	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08	18953937	56573109	24622101	90	149132											
L3MBTL4	91133	broad.mit.edu	37	chr18	6311632	6311632	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctgtttcattgccaccCccgcactccttggcagtggt	11	14	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6311632	A	A	6311632	1	1	186	0	1	0	0	0	0	0	0	0	8666	638	22	2		2	L3MBTL4	18	6311632	5'UTR	SNP	C	TCGA-64-1680-01A-02W-0928-08		6311632	71765616	91	149133											
PHLPP1	23239	broad.mit.edu	37	chr18	60625776	60625776	+	Intron	DEL	T	-	-													ataatgaatggtcagactgaTttgcatgcaaagagtaggag							TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60625776	-	-	60625776	6	5	186	0	1	1	0	1	0	0	0	0	11949	1508	52	0		0	PHLPP1	18	60625776	Intron	DEL	T	TCGA-64-1680-01A-02W-0928-08	54314144	60625776	17451472	92	149134											
SERPINB4	6318	broad.mit.edu	37	chr18	61304926	61304926	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctctaggtgaacattttCtaaatggagtgacagactaa	8	8	2	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61304926	G	G	61304926	1	3	186	0	1	0	0	0	0	0	0	0	14216	928	32	4		4	SERPINB4	18	61304926	3'UTR	SNP	C	TCGA-64-1680-01A-02W-0928-08	679150	61304926	16772322	93	149135											
OR1M1	125963	broad.mit.edu	37	chr19	9204692	9204692	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatgggaccaccattggcGtctatctgtgtccctcctcg	9	14	3	0	rs144608760		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9204692	A	A	9204692	3	1	186	1	0	0	0	0	1	0	0	0	11062	1145	40	4	774	4	OR1M1	19	9204692	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08		9204692	49924291	94	149136											
ZNF562	54811	broad.mit.edu	37	chr19	9764563	9764563	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagcttcttgtctgctgatGaggggataaaggatttaaaa	12	4	2	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9764563	C	C	9764563	1	2	186	0	1	0	0	0	0	0	0	0	18120	1305	45	4		4	ZNF562	19	9764563	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	559871	9764563	49364420	95	149137											
HOMER3	9454	broad.mit.edu	37	chr19	19043862	19043862	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcgggggcacctaggcaCggggaaaagaataggtcacg	17	9	1	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19043862	T	T	19043862	1	4	186	0	1	0	0	0	0	0	0	0	7347	551	19	4		4	HOMER3	19	19043862	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	9279299	19043862	40085121	96	149138											
PSG8	440533	broad.mit.edu	37	chr19	43290582	43290582	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acattcatagagtcctgtgtCactccttgtgatactgagta	8	9	2	3			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43290582	G	G	43290582	1	3	186	0	1	0	0	0	0	0	0	0	12767	841	29	4		4	PSG8	19	43290582	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08	24246720	43290582	15838401	97	149139											
PLA2G4C	8605	broad.mit.edu	37	chr19	48607875	48607875	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagacccctgcgaggtacGtgacggcatccaacaggccc	12	15	0	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48607875	A	A	48607875	3	1	186	1	0	0	0	0	1	0	0	0	12098	1145	40	4	1458	4	PLA2G4C	19	48607875	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	5317293	48607875	10521108	98	149140											
ZNF582	147948	broad.mit.edu	37	chr19	56895604	56895604	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacataccttacattggtaGggtttctctccagtgtgaat	8	10	1	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56895604	A	A	56895604	2	1	186	1	0	0	0	0	0	0	0	1	18141	987	35	4		4	ZNF582	19	56895604	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08	8287729	56895604	2233379	99	149141											
C20orf26	26074	broad.mit.edu	37	chr20	20322542	20322542	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatctcaggaaagagttaCgccaaatcttagcctccaag	8	10	2	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20322542	T	T	20322542	3	4	186	1	0	0	0	0	1	0	0	0	2128	536	19	4	3620	4	C20orf26	20	20322542	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08		20322542	42702978	100	149142											
DEFB119	245932	broad.mit.edu	37	chr20	29977126	29977126	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaacaggaggacagggaaGaagagaagaaagccagctga	16	5	0	4			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29977126	A	A	29977126	1	1	186	0	1	0	0	0	0	0	0	0	4446	957	33	4		4	DEFB119	20	29977126	Intron	SNP	G	TCGA-64-1680-01A-02W-0928-08	9654584	29977126	33048394	101	149143											
SPO11	23626	broad.mit.edu	37	chr20	55909089	55909089	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttggtaaccagactgtcGtcgacaatattatcaatgac	7	9	2	2	rs141106732		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55909089	A	A	55909089	3	1	186	1	0	0	0	0	1	0	0	0	15195	1145	40	4	466	4	SPO11	20	55909089	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	25931963	55909089	7116431	102	149144											
LCA5L	150082	broad.mit.edu	37	chr21	40778294	40778294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttcgtgtagggagcagtGcctttgccaagtgtgtcatc	12	10	1	0			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40778294	T	T	40778294	2	4	186	1	0	0	0	0	0	0	0	1	8729	1306	46	3		3	LCA5L	21	40778294	Silent	SNP	G	TCGA-64-1680-01A-02W-0928-08		40778294	7351601	103	149145											
U2AF1	7307	broad.mit.edu	37	chr21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcggtttattgtgcaaccgaGagcacctgtctccatgacga	10	11	1	2			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44524456	A	A	44524456	3	1	186	1	0	0	0	0	1	0	0	0	16947	942	33	4	720	4	U2AF1	21	44524456	Missense_Mutation	SNP	G	TCGA-64-1680-01A-02W-0928-08	3746162	44524456	3605439	104	149146											
GGT1	2678	broad.mit.edu	37	chr22	25010819	25010819	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggggctcatgaatgccCacagcatgggcatcgggggt	17	9	1	1			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25010819	G	G	25010819	3	3	186	1	0	0	0	0	1	0	0	0	6425	594	21	4	247	4	GGT1	22	25010819	Missense_Mutation	SNP	C	TCGA-64-1680-01A-02W-0928-08		25010819	26293747	105	149147											
GPM6B	2824	broad.mit.edu	37	chrX	13825830	13825830	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acgggatggtactggtggttCtttgagcctgggtacatcca	14	8	1	1	rs150832725	byFrequency	TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13825830	G	G	13825830	1	3	186	0	1	0	0	0	0	0	0	0	6681	912	32	4		4	GPM6B	23	13825830	Intron	SNP	C	TCGA-64-1680-01A-02W-0928-08		13825830	141444730	106	149148											
BTK	695	broad.mit.edu	37	chrX	100604833	100604833	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagtgaaattggggcttGtggagaagagaagtagaacc	15	3	0	5			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100604833	T	T	100604833	1	4	186	0	1	0	0	0	0	0	0	0	1567	1392	48	3		3	BTK	23	100604833	3'UTR	SNP	G	TCGA-64-1680-01A-02W-0928-08	86779003	100604833	54665727	107	149149											
NBPF1	55672	broad.mit.edu	37	chr1	16893037	16893037	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtctaatcctcacgcagGgacttcaggctcctcagcat	8	14	4	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16893037	A	A	16893037	1	1	187	0	1	0	0	0	0	0	0	0	10286	1247	43	4		4	NBPF1	1	16893037	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08		16893037	232357584	1	149150											
MYOM3	127294	broad.mit.edu	37	chr1	24419571	24419571	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgtgtagaggatcttcCgacgtctcgaggacctcagt	13	10	4	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24419571	A	A	24419571	3	1	187	1	0	0	0	0	1	0	0	0	10187	652	23	1	3469	1	MYOM3	1	24419571	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	7526534	24419571	224831050	2	149151											
BAI2	576	broad.mit.edu	37	chr1	32224807	32224807	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatgcacacaggtgaaaccCacagattcatgctgtcacac	7	13	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32224807	G	G	32224807	1	3	187	0	1	0	0	0	0	0	0	0	1304	609	21	4		4	BAI2	1	32224807	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	7805236	32224807	217025814	3	149152											
ZMYM1	79830	broad.mit.edu	37	chr1	35570213	35570213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatctttgcagtaatgcctGcctttcaaagtttcactctg	6	10	4	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35570213	T	T	35570213	3	4	187	1	0	0	0	0	1	0	0	0	17825	1319	46	3	668	3	ZMYM1	1	35570213	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	3345406	35570213	213680408	4	149153											
PGM1	5236	broad.mit.edu	37	chr1	64114274	64114274	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cccgcaagcagagtgtggagGacattctcaaagatcattgg	12	9	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64114274	C	C	64114274	3	2	187	1	0	0	0	0	1	0	0	0	11892	1174	41	4	1565	4	PGM1	1	64114274	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	28544061	64114274	185136347	5	149154											
JAK1	3716	broad.mit.edu	37	chr1	65305230	65305230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttttgcactggcctttAtgaccctagacagtcaccaa	7	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65305230	G	G	65305230	1	3	187	0	1	0	0	0	0	0	0	0	8007	464	16	5		5	JAK1	1	65305230	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	1190956	65305230	183945391	6	149155											
LEPR	3953	broad.mit.edu	37	chr1	66088687	66088687	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctttttcaattttttttaAcccagaatatatacgattgc	4	7	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66088687	G	G	66088687	1	3	187	0	1	0	0	0	0	0	0	0	8800	58	2	5		5	LEPR	1	66088687	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	783457	66088687	183161934	7	149156											
WDR78	79819	broad.mit.edu	37	chr1	67288263	67288263	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatggtcttttaaatagacAaagaaaaatttgacattttt	5	3	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67288263	T	T	67288263	1	4	187	0	1	0	0	0	0	0	0	0	17455	145	5	5		5	WDR78	1	67288263	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	1199576	67288263	181962358	8	149157											
WDR78	79819	broad.mit.edu	37	chr1	67301469	67301469	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgttctggccactaaatttTaaaaaattacattttcaatt	3	7	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67301469	A	A	67301469	1	1	187	0	1	0	0	0	0	0	0	0	17455	1769	61	5		5	WDR78	1	67301469	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	13206	67301469	181949152	9	149158											
PTPN22	26191	broad.mit.edu	37	chr1	114367829	114367829	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgttagttttttttcCtgtgaaacttgaaatacttt	5	4	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114367829	A	A	114367829	1	1	187	0	1	0	0	0	0	0	0	0	12895	696	24	2		2	PTPN22	1	114367829	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	47066360	114367829	134882792	10	149159											
ANXA9	8416	broad.mit.edu	37	chr1	150956939	150956939	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagccttgcttttgcaagAcgagagtccccctctcgtcg	10	14	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150956939	G	G	150956939	1	3	187	0	1	0	0	0	0	0	0	0	727	290	10	5		5	ANXA9	1	150956939	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	36589110	150956939	98293682	11	149160											
CELF3	11189	broad.mit.edu	37	chr1	151677546	151677546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggttggcatccttaggccGctttagctggactttgaggc	13	11	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151677546	T	T	151677546	2	4	187	1	0	0	0	0	0	0	0	1	3247	1086	38	3		3	CELF3	1	151677546	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	720607	151677546	97573075	12	149161											
RXFP4	339403	broad.mit.edu	37	chr1	155912009	155912009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgtgggcggcggctgCcctggtgacggtgcccacag	19	12	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155912009	A	A	155912009	3	1	187	1	0	0	0	0	1	0	0	0	13873	739	26	3	511	3	RXFP4	1	155912009	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	4234463	155912009	93338612	13	149162											
SPTA1	6708	broad.mit.edu	37	chr1	158593065	158593065	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttccaccagattttaatcaTagataaggctaggcaagaat	8	7	1	3	rs150957924	by1000genomes	TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158593065	C	C	158593065	1	2	187	0	1	0	0	0	0	0	0	0	15234	1421	49	5		5	SPTA1	1	158593065	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	2681056	158593065	90657556	14	149163											
SPTA1	6708	broad.mit.edu	37	chr1	158605807	158605807	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttgtctttcagcttctcTgccatatccagcacattctg	6	14	4	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158605807	A	A	158605807	2	1	187	1	0	0	0	0	0	0	0	1	15234	1567	55	5		5	SPTA1	1	158605807	Silent	SNP	T	TCGA-64-5774-01A-01D-1625-08	12742	158605807	90644814	15	149164											
OR6N2	81442	broad.mit.edu	37	chr1	158747003	158747003	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcagcagccatcttggcAcagagtgtggtggtcataat	12	9	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158747003	C	C	158747003	3	2	187	1	0	0	0	0	1	0	0	0	11301	157	6	5	533	5	OR6N2	1	158747003	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	141196	158747003	90503618	16	149165											
NCSTN	23385	broad.mit.edu	37	chr1	160327799	160327799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgtaggctggagagatGttgcccatgattattccata	11	7	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160327799	T	T	160327799	1	4	187	0	1	0	0	0	0	0	0	0	10336	1392	48	3		3	NCSTN	1	160327799	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1580796	160327799	88922822	17	149166											
LY9	4063	broad.mit.edu	37	chr1	160771628	160771628	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcatcgagggtgaccaccGcacactcctggagggcagcg	14	14	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160771628	A	A	160771628	1	1	187	0	1	0	0	0	0	0	0	0	9189	1087	38	4		4	LY9	1	160771628	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	443829	160771628	88478993	18	149167											
HMCN1	83872	broad.mit.edu	37	chr1	185985107	185985107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttcctccaatgattgaaGgcaacttggccacgcctttg	9	11	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185985107	T	T	185985107	3	4	187	1	0	0	0	0	1	0	0	0	7287	1000	35	2	5053	2	HMCN1	1	185985107	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	25213479	185985107	63265514	19	149168											
TMEM81	388730	broad.mit.edu	37	chr1	205052919	205052919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaggaaggaccctcaacCcaaaatagagcctcttgacg	10	11	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205052919	A	A	205052919	3	1	187	1	0	0	0	0	1	0	0	0	16328	623	22	2	241	2	TMEM81	1	205052919	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	19067812	205052919	44197702	20	149169											
KCNH1	3756	broad.mit.edu	37	chr1	211033267	211033267	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttataatgtaaagctgcaatTgcaacttgcatacccatagt	6	8	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211033267	A	A	211033267	1	1	187	0	1	0	0	0	0	0	0	0	8101	1827	63	5		5	KCNH1	1	211033267	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	5980348	211033267	38217354	21	149170											
KCNH1	3756	broad.mit.edu	37	chr1	211276891	211276891	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctcatagttctcaaatGtttgccgcactttttcaatc	4	11	4	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211276891	A	A	211276891	3	1	187	1	0	0	0	0	1	0	0	0	8101	1377	48	4	2748	4	KCNH1	1	211276891	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	243624	211276891	37973730	22	149171											
C1orf65	164127	broad.mit.edu	37	chr1	223567018	223567018	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccgcactgttcgttcacCccgcggcctcgcaggcgcgg	12	19	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223567018	A	A	223567018	2	1	187	1	0	0	0	0	0	0	0	1	2077	610	22	2		2	C1orf65	1	223567018	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	12290127	223567018	25683603	23	149172											
OBSCN	84033	broad.mit.edu	37	chr1	228554800	228554800	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcgagacatcctggccGcgctgagccacccgctggtc	15	15	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228554800	T	T	228554800	3	4	187	1	0	0	0	0	1	0	0	0	10907	1087	38	3	21100	3	OBSCN	1	228554800	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	4987782	228554800	20695821	24	149173											
DISC1	27185	broad.mit.edu	37	chr1	231902813	231902813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttgctggagtttcttaCtcttaaaatacttgtcaaca	5	10	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231902813	A	A	231902813	1	1	187	0	1	0	0	0	0	0	0	0	4578	580	20	3		3	DISC1	1	231902813	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	3348013	231902813	17347808	25	149174											
MTR	4548	broad.mit.edu	37	chr1	237057847	237057847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaaggcgctgggggaccGgctggcagaggtaaggcaga	20	8	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237057847	T	T	237057847	3	4	187	1	0	0	0	0	1	0	0	0	10052	1116	39	1	3513	1	MTR	1	237057847	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	5155034	237057847	12192774	26	149175											
FMN2	56776	broad.mit.edu	37	chr1	240307600	240307600	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccacctgagagccactgcCcccaaacctgttgttctcta	7	16	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	240307600	G	G	240307600	1	3	187	0	1	0	0	0	0	0	0	0	6008	638	22	4		4	FMN2	1	240307600	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	3249753	240307600	8943021	27	149176											
OR2L13	284521	broad.mit.edu	37	chr1	248099553	248099553	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatcccaaactaggccCcatttgtagaaatatttctg	5	11	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248099553	A	A	248099553	1	1	187	0	1	0	0	0	0	0	0	0	11100	638	22	2		2	OR2L13	1	248099553	5'Flank	SNP	C	TCGA-64-5774-01A-01D-1625-08	7791953	248099553	1151068	28	149177											
OR2T2	401992	broad.mit.edu	37	chr1	248616264	248616264	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccacatggactcccgcCtccacacacccatgtacttc	4	19	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248616264	A	A	248616264	3	1	187	1	0	0	0	0	1	0	0	0	11114	681	24	2	168	2	OR2T2	1	248616264	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	516711	248616264	634357	29	149178											
PDIA6	10130	broad.mit.edu	37	chr2	10927471	10927471	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagcaaatttcatcttgcGtgcattgatggcggccatgg	12	9	2	2	rs138012463		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10927471	A	A	10927471	3	1	187	1	0	0	0	0	1	0	0	0	11766	1145	40	4	241	4	PDIA6	2	10927471	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08		10927471	232271902	30	149179											
DDX1	1653	broad.mit.edu	37	chr2	15742716	15742716	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcaaagcagagaagtaaagGaatggcatgggtgtagagct	15	4	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15742716	T	T	15742716	4	4	187	1	0	0	0	0	0	1	0	0	4374	1175	41	3	378	3	DDX1	2	15742716	Nonsense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	4815245	15742716	227456657	31	149180											
DNMT3A	1788	broad.mit.edu	37	chr2	25468194	25468195	+	Missense_Mutation	DNP	GC	AG	AG													ttgaggctcccacaggagatGcagatgtctggaaagcagag							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	25468195	AG	AG	25468194	3	1	187	1	0	0	0	0	1	0	0	0	4716	1311	46	4	1300	4	DNMT3A	2	25468194	Missense_Mutation	DNP	GC	TCGA-64-5774-01A-01D-1625-08	9725478	25468194	217731179	32	149181											
NLRC4	58484	broad.mit.edu	37	chr2	32474464	32474464	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatatgtatgtttagccAacccattcaacataaagtgt	6	7	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32474464	T	T	32474464	1	4	187	0	1	0	0	0	0	0	0	0	10564	145	5	5		5	NLRC4	2	32474464	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	7006270	32474464	210724909	33	149182											
LTBP1	4052	broad.mit.edu	37	chr2	33623342	33623342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcttccttggggtggtcGggggaagggcctcaggtaag	18	7	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33623342	T	T	33623342	1	4	187	0	1	0	0	0	0	0	0	0	9160	1131	39	1		1	LTBP1	2	33623342	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1148878	33623342	209576031	34	149183											
VIT	5212	broad.mit.edu	37	chr2	36943409	36943409	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagagggcaatgcaaaaTgatgcagtctatccccacac	8	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36943409	C	C	36943409	1	2	187	0	1	0	0	0	0	0	0	0	17298	1479	51	5		5	VIT	2	36943409	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	3320067	36943409	206255964	35	149184											
NRXN1	9378	broad.mit.edu	37	chr2	50779824	50779824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacctgaccccatgtccaGgaggaggtagaggtggccat	14	10	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50779824	T	T	50779824	3	4	187	1	0	0	0	0	1	0	0	0	10760	991	35	2	3186	2	NRXN1	2	50779824	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	13836415	50779824	192419549	36	149185											
PUS10	150962	broad.mit.edu	37	chr2	61192322	61192322	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatatttcatacaaaatgGctgctaaactcaggacatca	5	8	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61192322	A	A	61192322	1	1	187	0	1	0	0	0	0	0	0	0	12939	1218	42	4		4	PUS10	2	61192322	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	10412498	61192322	182007051	37	149186											
LRRTM4	80059	broad.mit.edu	37	chr2	77745683	77745683	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagatcaccaagaggatcaTggccactgagagaaagagag	12	7	2	5			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77745683	C	C	77745683	3	2	187	1	0	0	0	0	1	0	0	0	9129	1464	51	5	474	5	LRRTM4	2	77745683	Missense_Mutation	SNP	T	TCGA-64-5774-01A-01D-1625-08	16553361	77745683	165453690	38	149187											
STARD7	56910	broad.mit.edu	37	chr2	96852686	96852686	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatcaggttaagctgacaTacaaaccaacagtaggctca	8	9	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96852686	C	C	96852686	1	2	187	0	1	0	0	0	0	0	0	0	15380	1421	49	5		5	STARD7	2	96852686	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	19107003	96852686	146346687	39	149188											
YSK4	80122	broad.mit.edu	37	chr2	135756462	135756462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctttttgcaaaactaaGggccgcatggtcagcttctt	8	11	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135756462	T	T	135756462	2	4	187	1	0	0	0	0	0	0	0	1	17622	987	35	2		2	YSK4	2	135756462	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	38903776	135756462	107442911	40	149189											
GALNT5	11227	broad.mit.edu	37	chr2	158142621	158142621	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggcttaataagggccagGctggcaggagcacagaatgc	14	9	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158142621	T	T	158142621	3	4	187	1	0	0	0	0	1	0	0	0	6278	1194	42	3	1726	3	GALNT5	2	158142621	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	22386159	158142621	85056752	41	149190											
CHRNA1	1134	broad.mit.edu	37	chr2	175622341	175622341	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatcttttctgaaggaatGtgaatttttttcacaccgcc	7	9	3	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175622341	C	C	175622341	3	2	187	1	0	0	0	0	1	0	0	0	3412	1368	48	4	1100	4	CHRNA1	2	175622341	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	17479720	175622341	67577032	42	149191											
PLEKHA3	65977	broad.mit.edu	37	chr2	179360448	179360448	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgcatgtggttttcgtttCattttggtatttatttttaa	8	3	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179360448	T	T	179360448	1	4	187	0	1	0	0	0	0	0	0	0	12152	841	29	4		4	PLEKHA3	2	179360448	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	3738107	179360448	63838925	43	149192											
COL5A2	1290	broad.mit.edu	37	chr2	189927933	189927933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggaaggcccatgctccCgggctgccctctgattccta	11	16	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189927933	A	A	189927933	3	1	187	1	0	0	0	0	1	0	0	0	3729	652	23	1	2777	1	COL5A2	2	189927933	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	10567485	189927933	53271440	44	149193											
ANKAR	150709	broad.mit.edu	37	chr2	190554683	190554683	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtagtctgcttcagccTttttcaggtaagagtatcac	8	8	4	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	190554683	C	C	190554683	2	2	187	1	0	0	0	0	0	0	0	1	623	1596	56	5		5	ANKAR	2	190554683	Silent	SNP	T	TCGA-64-5774-01A-01D-1625-08	626750	190554683	52644690	45	149194											
STAT4	6775	broad.mit.edu	37	chr2	191934399	191934399	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtctctatgcataattaTagaaaaaacaaaaacttacc	3	7	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191934399	C	C	191934399	1	2	187	0	1	0	0	0	0	0	0	0	15385	1421	49	5		5	STAT4	2	191934399	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	1379716	191934399	51264974	46	149195											
NRP2	8828	broad.mit.edu	37	chr2	206590586	206590586	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcagcatttgggggatcccGaggtatgaggttggaaggcc	18	7	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206590586	T	T	206590586	1	4	187	0	1	0	0	0	0	0	0	0	10756	1073	37	3		3	NRP2	2	206590586	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	14656187	206590586	36608787	47	149196											
SPEG	10290	broad.mit.edu	37	chr2	220336764	220336764	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcctggcctctggcactaCgtgggggctcagggaaaggg	17	11	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220336764	T	T	220336764	1	4	187	0	1	0	0	0	0	0	0	0	15154	551	19	4		4	SPEG	2	220336764	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	13746178	220336764	22862609	48	149197											
CAPN10	11132	broad.mit.edu	37	chr2	241536200	241536200	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggagagtcggccagacGgcggggggcagcaggaactt	18	9	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241536200	T	T	241536200	2	4	187	1	0	0	0	0	0	0	0	1	2649	1103	39	1		1	CAPN10	2	241536200	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	21199436	241536200	1663173	49	149198											
KIF1A	547	broad.mit.edu	37	chr2	241727615	241727615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccgatgtcccggtacacCtgcttctgcgacgcgtagtt	11	14	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241727615	A	A	241727615	3	1	187	1	0	0	0	0	1	0	0	0	8353	680	24	2	5032	2	KIF1A	2	241727615	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	191415	241727615	1471758	50	149199											
CNTN4	152330	broad.mit.edu	37	chr3	2944500	2944500	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatattacacatggtaaaaTtgccttaaagtctcagttgt	7	6	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2944500	A	A	2944500	1	1	187	0	1	0	0	0	0	0	0	0	3675	1508	52	5		5	CNTN4	3	2944500	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08		2944500	195077930	51	149200											
IL17RE	132014	broad.mit.edu	37	chr3	9948463	9948463	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctccccagacatctcccAcaagggacttcgctctaaaa	5	18	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9948463	T	T	9948463	3	4	187	1	0	0	0	0	1	0	0	0	7713	159	6	5	458	5	IL17RE	3	9948463	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	7003963	9948463	188073967	52	149201											
MST1	4485	broad.mit.edu	37	chr3	49723937	49723937	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatggaccgagataggtcGggccccgagcgagagctgag	17	9	0	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49723937	A	A	49723937	1	1	187	0	1	0	0	0	0	0	0	0	9984	1131	39	4		4	MST1	3	49723937	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	39775474	49723937	148298493	53	149202											
HTR1F	3355	broad.mit.edu	37	chr3	88040430	88040430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgcatcatcaagcacgaCcacattgtttccaccattta	5	12	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88040430	A	A	88040430	3	1	187	1	0	0	0	0	1	0	0	0	7510	506	18	3	533	3	HTR1F	3	88040430	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	38316493	88040430	109982000	54	149203											
ZPLD1	131368	broad.mit.edu	37	chr3	102189285	102189285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgggaggaggacgacttgGagcccccagagctcttctgg	16	11	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102189285	T	T	102189285	3	4	187	1	0	0	0	0	1	0	0	0	18350	1183	41	3	1063	3	ZPLD1	3	102189285	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	14148855	102189285	95833145	55	149204											
B4GALT4	8702	broad.mit.edu	37	chr3	118949056	118949056	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgacaactgaagatacaAtgcctggtttttctcagtag	9	7	1	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118949056	G	G	118949056	1	3	187	0	1	0	0	0	0	0	0	0	1278	116	4	5		5	B4GALT4	3	118949056	5'UTR	SNP	A	TCGA-64-5774-01A-01D-1625-08	16759771	118949056	79073374	56	149205											
PARP9	83666	broad.mit.edu	37	chr3	122259566	122259566	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcaatgatgtggtggttCtggagactcaggattctttg	12	6	4	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122259566	G	G	122259566	3	3	187	1	0	0	0	0	1	0	0	0	11560	912	32	4	1010	4	PARP9	3	122259566	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	3310510	122259566	75762864	57	149206											
CEP70	80321	broad.mit.edu	37	chr3	138219359	138219359	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcacatcaaataacttttgGaagtgagaaacaatagcttg	9	6	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138219359	A	A	138219359	2	1	187	1	0	0	0	0	0	0	0	1	3289	1165	41	4		4	CEP70	3	138219359	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	15959793	138219359	59803071	58	149207											
PLOD2	5352	broad.mit.edu	37	chr3	145824249	145824249	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacctttgtttctgaccactCcacattaacacaatataaca	2	12	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145824249	T	T	145824249	1	4	187	0	1	0	0	0	0	0	0	0	12197	870	30	4		4	PLOD2	3	145824249	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	7604890	145824249	52198181	59	149208											
LIPH	200879	broad.mit.edu	37	chr3	185251403	185251403	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtacatctctccaacaaacCcagatatgtgggctcctaga	7	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185251403	T	T	185251403	3	4	187	1	0	0	0	0	1	0	0	0	8897	623	22	4	905	4	LIPH	3	185251403	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	39427154	185251403	12771027	60	149209											
ZNF595	152687	broad.mit.edu	37	chr4	53500	53500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgctgccgcctctcagacCtcagtcccctccggtgacgg	10	20	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53500	A	A	53500	1	1	187	0	1	0	0	0	0	0	0	0	18152	696	24	2		2	ZNF595	4	53500	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08		53500	191100776	61	149210											
SPON2	10417	broad.mit.edu	37	chr4	1164080	1164080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccatcttgcagtacgcaCtacgaatccctacttggaat	7	13	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1164080	A	A	1164080	1	1	187	0	1	0	0	0	0	0	0	0	15201	580	20	3		3	SPON2	4	1164080	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	1110580	1164080	189990196	62	149211											
GABRG1	2565	broad.mit.edu	37	chr4	46060732	46060732	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagattcttggaactttctcCtctttttttattacaagata	4	7	3	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46060732	T	T	46060732	1	4	187	0	1	0	0	0	0	0	0	0	6231	696	24	4		4	GABRG1	4	46060732	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	44896652	46060732	145093544	63	149212											
GABRG1	2565	broad.mit.edu	37	chr4	46125866	46125866	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagtaacaagaagaccaacCtcacccctctactttgactc	4	15	3	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46125866	G	G	46125866	3	3	187	1	0	0	0	0	1	0	0	0	6231	681	24	4	1368	4	GABRG1	4	46125866	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	65134	46125866	145028410	64	149213											
FRYL	285527	broad.mit.edu	37	chr4	48577875	48577875	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacgtattattgattccaaCtaggaatccataaaagcaat	6	7	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48577875	A	A	48577875	1	1	187	0	1	0	0	0	0	0	0	0	6124	580	20	3		3	FRYL	4	48577875	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	2452009	48577875	142576401	65	149214											
EXOC1	55763	broad.mit.edu	37	chr4	56763095	56763095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttatgttctaaagaattGttatagctattgtttttatt	6	2	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56763095	A	A	56763095	1	1	187	0	1	0	0	0	0	0	0	0	5343	1392	48	4		4	EXOC1	4	56763095	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	8185220	56763095	134391181	66	149215											
EPHA5	2044	broad.mit.edu	37	chr4	66231689	66231689	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatggtgatacatgatgcttCtatctccttagcaaattcgt	7	8	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66231689	G	G	66231689	3	3	187	1	0	0	0	0	1	0	0	0	5212	922	32	4	1134	4	EPHA5	4	66231689	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	9468594	66231689	124922587	67	149216											
MUC7	4589	broad.mit.edu	37	chr4	71346861	71346861	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgtgacttttcttcccCagaatgccaccaccatatct	4	14	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71346861	A	A	71346861	3	1	187	1	0	0	0	0	1	0	0	0	10075	595	21	2	406	2	MUC7	4	71346861	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	5115172	71346861	119807415	68	149217											
SEC31A	22872	broad.mit.edu	37	chr4	83740219	83740219	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatattgagtggaagagaagCtgtccttttagacacccagc	10	8	0	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83740219	T	T	83740219	1	4	187	0	1	0	0	0	0	0	0	0	14111	812	28	4		4	SEC31A	4	83740219	3'UTR	SNP	C	TCGA-64-5774-01A-01D-1625-08	12393358	83740219	107414057	69	149218											
PDHA2	5161	broad.mit.edu	37	chr4	96761794	96761794	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatgggggcaatggcatcGtcggtgcacagggccccctg	15	12	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761794	A	A	96761794	3	1	187	1	0	0	0	0	1	0	0	0	11759	1145	40	4	495	4	PDHA2	4	96761794	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	13021575	96761794	94392482	70	149219											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99338057	99338057	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgagttgtaatttatgCcagccaaagaatgtggttgt	13	4	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99338057	T	T	99338057	1	4	187	0	1	0	0	0	0	0	0	0	13147	754	26	4		4	RAP1GDS1	4	99338057	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	2576263	99338057	91816219	71	149220											
ADH5	128	broad.mit.edu	37	chr4	100009932	100009932	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgggcgtggcgagcgcCtagcgaggggggcggggcgt	24	9	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100009932	A	A	100009932	5	1	187	1	0	0	0	0	0	0	1	0	311	696	24	2		2	ADH5	4	100009932	Splice_Site	SNP	C	TCGA-64-5774-01A-01D-1625-08	671875	100009932	91144344	72	149221											
C4orf41	60684	broad.mit.edu	37	chr4	184605873	184605874	+	Frame_Shift_Ins	INS	-	TATC	TATC													tggattatgtgatgtgtgatINStatcggagtgaaggatggtg							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TATC	184605874	TATC	TATC	184605873	7	5	187	1	0	1	1	0	0	0	0	0	2293	1490	52	0	1500	0	C4orf41	4	184605873	Frame_Shift_Ins	INS	-	TCGA-64-5774-01A-01D-1625-08	84595941	184605873	6548403	73	149222											
SEMA5A	9037	broad.mit.edu	37	chr5	9122703	9122703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatattataaatgatgtcCcaaactcctcgagaatctga	6	8	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9122703	A	A	9122703	1	1	187	0	1	0	0	0	0	0	0	0	14150	638	22	2		2	SEMA5A	5	9122703	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08		9122703	171792557	74	149223											
DNAH5	1767	broad.mit.edu	37	chr5	13717423	13717424	+	Splice_Site	DNP	CC	AA	AA													aggcagcatgcgcggcagtaCctttttgacatccatgtcat							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	13717424	AA	AA	13717423	5	1	187	1	0	0	0	0	0	0	1	0	4644	521	18	3	1196	3	DNAH5	5	13717423	Splice_Site	DNP	CC	TCGA-64-5774-01A-01D-1625-08	4594720	13717423	167197837	75	149224											
FBXL7	23194	broad.mit.edu	37	chr5	15935215	15935215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggctggagagcatttGtggtgtgcgggaaatgacaa	16	5	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15935215	T	T	15935215	1	4	187	0	1	0	0	0	0	0	0	0	5781	1392	48	3		3	FBXL7	5	15935215	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	2217792	15935215	164980045	76	149225											
CDH10	1008	broad.mit.edu	37	chr5	24511534	24511534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcggtattctacttcagCatttttcccagtgtcagcat	6	10	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24511534	A	A	24511534	3	1	187	1	0	0	0	0	1	0	0	0	3126	710	25	3	1490	3	CDH10	5	24511534	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	8576319	24511534	156403726	77	149226											
SPEF2	79925	broad.mit.edu	37	chr5	35753895	35753895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcacaataacccaggcaCttcccttcacagcctcattc	5	16	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35753895	A	A	35753895	1	1	187	0	1	0	0	0	0	0	0	0	15153	580	20	3		3	SPEF2	5	35753895	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	11242361	35753895	145161365	78	149227											
PLCXD3	345557	broad.mit.edu	37	chr5	41475689	41475689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctgtttatccctgtaggCctcttcaggtcccttcaggt	8	13	4	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41475689	A	A	41475689	1	1	187	0	1	0	0	0	0	0	0	0	12138	754	26	3		3	PLCXD3	5	41475689	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	5721794	41475689	139439571	79	149228											
GHR	2690	broad.mit.edu	37	chr5	42467898	42467898	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcctttcccacacatgctAcaatgtaaaagactttcgcc	4	13	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42467898	G	G	42467898	1	3	187	0	1	0	0	0	0	0	0	0	6435	406	14	5		5	GHR	5	42467898	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	992209	42467898	138447362	80	149229											
PAPD4	167153	broad.mit.edu	37	chr5	78964730	78964730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaggagtcttttagtcctGctatacagctgcaccttgta	9	10	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78964730	T	T	78964730	3	4	187	1	0	0	0	0	1	0	0	0	11518	1319	46	3	1129	3	PAPD4	5	78964730	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	36496832	78964730	101950530	81	149230											
EDIL3	10085	broad.mit.edu	37	chr5	83525673	83525673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaacataggaactttacCtgctgaagttggttcttctt	7	8	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83525673	A	A	83525673	3	1	187	1	0	0	0	0	1	0	0	0	4955	695	24	2	1252	2	EDIL3	5	83525673	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	4560943	83525673	97389587	82	149231											
SEMA6A	57556	broad.mit.edu	37	chr5	115783135	115783135	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggggttgactctggggtgGggagggccgtcaggtccagg	21	7	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115783135	A	A	115783135	3	1	187	1	0	0	0	0	1	0	0	0	14152	1232	43	4	829	4	SEMA6A	5	115783135	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	32257462	115783135	65132125	83	149232											
RAPGEF6	51735	broad.mit.edu	37	chr5	130815580	130815580	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcattcaactaaacactgTcaagtatttacccgtccttt	3	12	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130815580	A	A	130815580	1	1	187	0	1	0	0	0	0	0	0	0	13156	1682	58	5		5	RAPGEF6	5	130815580	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	15032445	130815580	50099680	84	149233											
PCDHA2	56146	broad.mit.edu	37	chr5	140176284	140176284	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgctgctggcgcagtgagtGagctggtgccgtggtcggtg	19	10	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140176284	T	T	140176284	4	4	187	1	0	0	0	0	0	1	0	0	11618	1291	45	3	1737	3	PCDHA2	5	140176284	Nonsense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	9360704	140176284	40738976	85	149234											
PCDHB12	56124	broad.mit.edu	37	chr5	140588899	140588899	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaaaagaaatgctcttAgaaatcccagagaacagtcc	8	8	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140588899	T	T	140588899	3	4	187	1	0	0	0	0	1	0	0	0	11631	417	15	5	422	5	PCDHB12	5	140588899	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	412615	140588899	40326361	86	149235											
PCDHGB2	56103	broad.mit.edu	37	chr5	140741968	140741968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattcctacaacctgtgtGttgcctcacaatcagccaag	6	14	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140741968	T	T	140741968	3	4	187	1	0	0	0	0	1	0	0	0	11657	1377	48	3	2268	3	PCDHGB2	5	140741968	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	153069	140741968	40173292	87	149236											
SLC6A7	6534	broad.mit.edu	37	chr5	149584134	149584134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttctggatgactacagcGccagcttcgggctgatggtg	13	11	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149584134	T	T	149584134	3	4	187	1	0	0	0	0	1	0	0	0	14803	1087	38	3	1414	3	SLC6A7	5	149584134	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	8842166	149584134	31331126	88	149237											
ADAM19	8728	broad.mit.edu	37	chr5	156964936	156964936	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctccaatttccgtgtGgtggtttgagggttaccact	10	11	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156964936	C	C	156964936	2	2	187	1	0	0	0	0	0	0	0	1	240	1335	47	4		4	ADAM19	5	156964936	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	7380802	156964936	23950324	89	149238											
DOCK2	1794	broad.mit.edu	37	chr5	169144558	169144558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggatgcctagggcacaGgaacttgagtaattttcttt	11	8	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169144558	T	T	169144558	1	4	187	0	1	0	0	0	0	0	0	0	4727	1015	35	2		2	DOCK2	5	169144558	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	12179622	169144558	11770702	90	149239											
FAF2	23197	broad.mit.edu	37	chr5	175923528	175923528	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacctatccattcctggccAtgattatgctgaaggatcga	8	11	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175923528	G	G	175923528	3	3	187	1	0	0	0	0	1	0	0	0	5416	217	8	5	733	5	FAF2	5	175923528	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	6778970	175923528	4991732	91	149240											
GMDS	2762	broad.mit.edu	37	chr6	1726638	1726638	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccacgcactgggtggccaGagagtccttaccacttcagt	12	13	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1726638	T	T	1726638	1	4	187	0	1	0	0	0	0	0	0	0	6550	957	33	3		3	GMDS	6	1726638	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08		1726638	169388429	92	149241											
BTN2A1	11120	broad.mit.edu	37	chr6	26458825	26458825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctaggctgattctcctctGtaaccctaggcctcctgtcc	7	16	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26458825	T	T	26458825	1	4	187	0	1	0	0	0	0	0	0	0	1570	1392	48	3		3	BTN2A1	6	26458825	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	24732187	26458825	144656242	93	149242											
BTN2A1	11120	broad.mit.edu	37	chr6	26458854	26458854	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctcctgtccctgcctgcTctgggtgctcatggaatcag	12	14	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26458854	C	C	26458854	1	2	187	0	1	0	0	0	0	0	0	0	1570	1566	54	5		5	BTN2A1	6	26458854	5'UTR	SNP	T	TCGA-64-5774-01A-01D-1625-08	29	26458854	144656213	94	149243											
HIST1H2AH	85235	broad.mit.edu	37	chr6	27114805	27114805	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttccattggttaaaactaaGctacaaccctaaccaatgac	4	12	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27114805	C	C	27114805	1	2	187	0	1	0	0	0	0	0	0	0	7201	986	34	4		4	HIST1H2AH	6	27114805	5'Flank	SNP	G	TCGA-64-5774-01A-01D-1625-08	655951	27114805	144000262	95	149244											
C6orf89	221477	broad.mit.edu	37	chr6	36882185	36882185	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagacgccccaaggaaatttGagaggctccatccactggtg	11	11	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36882185	C	C	36882185	3	2	187	1	0	0	0	0	1	0	0	0	2397	1291	45	4	564	4	C6orf89	6	36882185	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	9767380	36882185	134232882	96	149245											
KLHDC3	116138	broad.mit.edu	37	chr6	42984763	42984763	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtggaggggtagtgtgGgagggcccccagggtgacac	19	10	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42984763	C	C	42984763	1	2	187	0	1	0	0	0	0	0	0	0	8428	1247	43	4		4	KLHDC3	6	42984763	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	6102578	42984763	128130304	97	149246											
CUL9	23113	broad.mit.edu	37	chr6	43171396	43171396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagaagtaggagggatgCtcctgtgggagtccggaagg	19	5	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43171396	A	A	43171396	1	1	187	0	1	0	0	0	0	0	0	0	4094	812	28	3		3	CUL9	6	43171396	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	186633	43171396	127943671	98	149247											
PKHD1	5314	broad.mit.edu	37	chr6	51947112	51947112	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcacagcaaaaattgctcTaatatgtcaccaaaagatac	4	9	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51947112	C	C	51947112	1	2	187	0	1	0	0	0	0	0	0	0	12066	1537	53	5		5	PKHD1	6	51947112	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	8775716	51947112	119167955	99	149248											
LRRC1	55227	broad.mit.edu	37	chr6	53785527	53785527	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagtgcgatccgatttgtgGaggatgagaaagatgaagaa	14	4	1	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53785527	C	C	53785527	3	2	187	1	0	0	0	0	1	0	0	0	9053	1175	41	4	1434	4	LRRC1	6	53785527	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	1838415	53785527	117329540	100	149249											
KHDRBS2	202559	broad.mit.edu	37	chr6	62604458	62604458	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacattacctgctatattcaCggtatatgaacagtttgaga	7	7	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62604458	T	T	62604458	1	4	187	0	1	0	0	0	0	0	0	0	8217	551	19	4		4	KHDRBS2	6	62604458	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	8818931	62604458	108510609	101	149250											
GRIK2	2898	broad.mit.edu	37	chr6	102516291	102516291	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccagcgtcggttaaaacatAagccacaggccccagttatt	9	12	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102516291	T	T	102516291	4	4	187	1	0	0	0	0	0	1	0	0	6840	363	13	5	2867	5	GRIK2	6	102516291	Nonsense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	39911833	102516291	68598776	102	149251											
RTN4IP1	84816	broad.mit.edu	37	chr6	107019974	107019974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtttgttcaataactggcCggatctgtaaaacataagag	10	6	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107019974	A	A	107019974	3	1	187	1	0	0	0	0	1	0	0	0	13840	652	23	1	106	1	RTN4IP1	6	107019974	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	4503683	107019974	64095093	103	149252											
REV3L	5980	broad.mit.edu	37	chr6	111710563	111710563	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatcccaacctacacttacTatgttactccttttttagtt	2	11	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111710563	C	C	111710563	1	2	187	0	1	0	0	0	0	0	0	0	13348	1537	53	5		5	REV3L	6	111710563	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	4690589	111710563	59404504	104	149253											
PDE10A	10846	broad.mit.edu	37	chr6	165808769	165808769	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatctgaaattttaaaagGgcagtttatcactaaacgtg	9	5	2	1	rs112070289		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165808769	T	T	165808769	1	4	187	0	1	0	0	0	0	0	0	0	11724	1247	43	2		2	PDE10A	6	165808769	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	54098206	165808769	5306298	105	149254											
AMZ1	155185	broad.mit.edu	37	chr7	2740046	2740046	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggtggcccatggacagcaGcaggggctcccaggagtggc	18	12	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2740046	T	T	2740046	1	4	187	0	1	0	0	0	0	0	0	0	596	986	34	3		3	AMZ1	7	2740046	5'UTR	SNP	G	TCGA-64-5774-01A-01D-1625-08		2740046	156398617	106	149255											
CARD11	84433	broad.mit.edu	37	chr7	2979357	2979357	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcaccctcccactgcccgCgctggccccgcccccaggcc	8	26	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2979357	T	T	2979357	1	4	187	0	1	0	0	0	0	0	0	0	2671	783	27	4		4	CARD11	7	2979357	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	239311	2979357	156159306	107	149256											
DNAH11	8701	broad.mit.edu	37	chr7	21628977	21628977	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatcaacccttggttaaaTtcagtgccataaatggtctt	7	8	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21628977	C	C	21628977	3	2	187	1	0	0	0	0	1	0	0	0	4639	1493	52	5	2171	5	DNAH11	7	21628977	Missense_Mutation	SNP	T	TCGA-64-5774-01A-01D-1625-08	18649620	21628977	137509686	108	149257											
FKBP9	11328	broad.mit.edu	37	chr7	33014319	33014319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgttgggatgtgcgtaaaCgagagacgtttcgtgaagat	14	5	0	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33014319	A	A	33014319	3	1	187	1	0	0	0	0	1	0	0	0	5972	535	19	3	318	3	FKBP9	7	33014319	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	11385342	33014319	126124344	109	149258											
STARD3NL	83930	broad.mit.edu	37	chr7	38247379	38247379	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagaagtgtttccagagacAacagggtttttttgttcgtt	10	5	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38247379	T	T	38247379	1	4	187	0	1	0	0	0	0	0	0	0	15376	145	5	5		5	STARD3NL	7	38247379	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	5233060	38247379	120891284	110	149259											
MYO1G	64005	broad.mit.edu	37	chr7	45005521	45005521	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggccctaacccttagacCcaaacctggccctgagcatt	7	16	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45005521	G	G	45005521	1	3	187	0	1	0	0	0	0	0	0	0	10168	638	22	4		4	MYO1G	7	45005521	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	6758142	45005521	114133142	111	149260											
C7orf61	402573	broad.mit.edu	37	chr7	100054363	100054363	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtcaggactctctaagggtCtggggttccccctagagggg	16	10	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100054363	T	T	100054363	1	4	187	0	1	0	0	0	0	0	0	0	2433	928	32	4		4	C7orf61	7	100054363	3'UTR	SNP	C	TCGA-64-5774-01A-01D-1625-08	55048842	100054363	59084300	112	149261											
MUC17	140453	broad.mit.edu	37	chr7	100680531	100680531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagttctgaaatcaacaCcctttcaacaactcttgctg	6	13	4	1	rs141297128	byFrequency	TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100680531	A	A	100680531	3	1	187	1	0	0	0	0	1	0	0	0	10068	507	18	3	5844	3	MUC17	7	100680531	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	626168	100680531	58458132	113	149262											
MUC17	140453	broad.mit.edu	37	chr7	100682994	100682994	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caccctgccagtggccagttCtgaggctagcaccgtttcaa	10	14	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100682994	G	G	100682994	3	3	187	1	0	0	0	0	1	0	0	0	10068	913	32	4	8307	4	MUC17	7	100682994	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	2463	100682994	58455669	114	149263											
VGF	7425	broad.mit.edu	37	chr7	100807902	100807902	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccggggatccacgccctGgaaaagctctccctcgtcct	10	18	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100807902	T	T	100807902	3	4	187	1	0	0	0	0	1	0	0	0	17284	1357	47	2	1628	2	VGF	7	100807902	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	124908	100807902	58330761	115	149264											
ST7	7982	broad.mit.edu	37	chr7	116870061	116870061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actattccatattaaaagctGtttttgttgtacaaaattca	4	6	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116870061	T	T	116870061	3	4	187	1	0	0	0	0	1	0	0	0	15347	1392	48	3		3	ST7	7	116870061	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	16062159	116870061	42268602	116	149265											
WNT2	7472	broad.mit.edu	37	chr7	116955207	116955207	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttgcatccacaaatgcgCgggcaaatttgatcccatag	8	12	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116955207	T	T	116955207	3	4	187	1	0	0	0	0	1	0	0	0	17513	768	27	4	588	4	WNT2	7	116955207	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	85146	116955207	42183456	117	149266											
PLXNA4	91584	broad.mit.edu	37	chr7	131912276	131912276	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcactggatctgattgcccaCgaccagcccatccatctctg	8	16	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131912276	T	T	131912276	3	4	187	1	0	0	0	0	1	0	0	0	12217	536	19	4	3972	4	PLXNA4	7	131912276	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	14957069	131912276	27226387	118	149267											
AKR1B15	441282	broad.mit.edu	37	chr7	134250189	134250189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctggacacagcaggacGtgagacttctacctgctcac	9	13	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134250189	T	T	134250189	1	4	187	0	1	0	0	0	0	0	0	0	468	1160	40	3		3	AKR1B15	7	134250189	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	2337913	134250189	24888474	119	149268											
FAM131B	9715	broad.mit.edu	37	chr7	143055984	143055984	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taggcatccgtatccctgcgCacggactcatggctgtgttg	12	12	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143055984	G	G	143055984	2	3	187	1	0	0	0	0	0	0	0	1	5486	697	25	4		4	FAM131B	7	143055984	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	8805795	143055984	16082679	120	149269											
OR2A14	135941	broad.mit.edu	37	chr7	143826152	143826152	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaagtgctccctctgtgCatctttgactggcccacagc	8	14	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143826152	A	A	143826152	1	1	187	0	1	0	0	0	0	0	0	0	11070	725	25	3		3	OR2A14	7	143826152	5'Flank	SNP	C	TCGA-64-5774-01A-01D-1625-08	770168	143826152	15312511	121	149270											
CNTNAP2	26047	broad.mit.edu	37	chr7	146829326	146829326	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcctcagagcctgtctttCtattttacagggaaatttga	7	8	3	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146829326	A	A	146829326	1	1	187	0	1	0	0	0	0	0	0	0	3679	928	32	3		3	CNTNAP2	7	146829326	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	3003174	146829326	12309337	122	149271											
DLGAP2	9228	broad.mit.edu	37	chr8	1496873	1496873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggagcatgaagggcctttCcggaagtcggacccagccgc	14	13	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1496873	A	A	1496873	3	1	187	1	0	0	0	0	1	0	0	0	4600	855	30	3	16	3	DLGAP2	8	1496873	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08		1496873	144867149	123	149272			1	115		3	3	714	N	G_C	2.835276e-05
DLGAP2	9228	broad.mit.edu	37	chr8	1497432	1497432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaccaccacgcccaccaCgccaagcacagcaagaggag	9	18	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1497432	A	A	1497432	3	1	187	1	0	0	0	0	1	0	0	0	4600	535	19	3	575	3	DLGAP2	8	1497432	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	559	1497432	144866590	124	149273			1	115		3	3	714	N	G_C	2.835276e-05
DLGAP2	9228	broad.mit.edu	37	chr8	1497586	1497586	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accggcaccacctgggccccGtggcccactgctaccccgac	10	21	0	0	rs145069342	by1000genomes	TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1497586	T	T	1497586	3	4	187	1	0	0	0	0	1	0	0	0	4600	1145	40	3	729	3	DLGAP2	8	1497586	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	154	1497586	144866436	125	149274			1	115		3	3	714	N	G_C	2.835276e-05
ARHGEF10	9639	broad.mit.edu	37	chr8	1806307	1806307	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccaggagggtccccaggTgagtccccaggtgggtcccc	14	14	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1806307	A	A	1806307	1	1	187	0	1	0	0	0	0	0	0	0	896	1711	59	5		5	ARHGEF10	8	1806307	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	308721	1806307	144557715	126	149275											
CSMD1	64478	broad.mit.edu	37	chr8	2963989	2963989	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaatgcagaccaatacAaacaatacaattttccatgt	4	8	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2963989	G	G	2963989	1	3	187	0	1	0	0	0	0	0	0	0	3978	145	5	5		5	CSMD1	8	2963989	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	1157682	2963989	143400033	127	149276											
CSMD1	64478	broad.mit.edu	37	chr8	3087578	3087578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacctatgcatgtaggaggGtctggttgccaaaagaaccg	12	8	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3087578	T	T	3087578	3	4	187	1	0	0	0	0	1	0	0	0	3978	1252	44	3	6541	3	CSMD1	8	3087578	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	123589	3087578	143276444	128	149277											
NEFL	4747	broad.mit.edu	37	chr8	24813612	24813612	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggtcgcggatctcctgctCgtacagcgcccggaagcggg	15	14	1	0	rs121913663		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24813612	T	T	24813612	3	4	187	1	0	0	0	0	1	0	0	0	10410	893	31	4	1230	4	NEFL	8	24813612	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	21726034	24813612	121550410	129	149278											
NRG1	3084	broad.mit.edu	37	chr8	32453386	32453386	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgaaaagccaggaatcGgctgcaggttccaaactagt	12	8	0	2	rs147561043		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32453386	T	T	32453386	2	4	187	1	0	0	0	0	0	0	0	1	10742	1116	39	1		1	NRG1	8	32453386	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	7639774	32453386	113910636	130	149279											
ADAM32	203102	broad.mit.edu	37	chr8	39089665	39089665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatggaggtatgctctaCaaatataaatgatacttttc	9	5	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39089665	A	A	39089665	1	1	187	0	1	0	0	0	0	0	0	0	249	493	17	3		3	ADAM32	8	39089665	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	6636279	39089665	107274357	131	149280											
POTEA	340441	broad.mit.edu	37	chr8	43159892	43159892	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaccagatgccaaacaactCttctggaaatagcaatccag	6	11	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43159892	A	A	43159892	3	1	187	1	0	0	0	0	1	0	0	0	12356	913	32	3	906	3	POTEA	8	43159892	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	4070227	43159892	103204130	132	149281											
CHD7	55636	broad.mit.edu	37	chr8	61777733	61777734	+	Missense_Mutation	DNP	GG	TT	TT													tcagggatcaaccctttgctGgtgaacagcctgtttgctgg							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	61777734	TT	TT	61777733	3	4	187	1	0	0	0	0	1	0	0	0	3361	1335	47	2	8381	2	CHD7	8	61777733	Missense_Mutation	DNP	GG	TCGA-64-5774-01A-01D-1625-08	18617841	61777733	84586289	133	149282											
LRRCC1	85444	broad.mit.edu	37	chr8	86042158	86042158	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggtattttactcagataaGactgatccaagaggtggaac	11	6	1	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86042158	A	A	86042158	3	1	187	1	0	0	0	0	1	0	0	0	9113	942	33	4	1673	4	LRRCC1	8	86042158	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	24264425	86042158	60321864	134	149283											
MMP16	4325	broad.mit.edu	37	chr8	89086995	89086995	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaccaagcaaaggcatctCtcaacaaacacgtaggcctc	6	14	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89086995	A	A	89086995	1	1	187	0	1	0	0	0	0	0	0	0	9748	928	32	3		3	MMP16	8	89086995	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	3044837	89086995	57277027	135	149284											
PKHD1L1	93035	broad.mit.edu	37	chr8	110454418	110454418	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagtggaagacaaaaatctAcatcaggtatgtttctgctt	8	7	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110454418	T	T	110454418	3	4	187	1	0	0	0	0	1	0	0	0	12067	391	14	5	4525	5	PKHD1L1	8	110454418	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	21367423	110454418	35909604	136	149285											
KIAA0196	9897	broad.mit.edu	37	chr8	126085512	126085512	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttaaataaccttcttttaGaaattgctgcacttgagcat	5	9	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126085512	A	A	126085512	2	1	187	1	0	0	0	0	0	0	0	1	8231	933	33	4		4	KIAA0196	8	126085512	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	15631094	126085512	20278510	137	149286											
GLDC	2731	broad.mit.edu	37	chr9	6589353	6589353	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggagccacatgtggacatCcaggcttctgggtggctggg	16	10	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6589353	A	A	6589353	1	1	187	0	1	0	0	0	0	0	0	0	6497	870	30	3		3	GLDC	9	6589353	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08		6589353	134624078	138	149287											
PTPRD	5789	broad.mit.edu	37	chr9	8493032	8493032	+	Intron	DEL	G	-	-													aaacatgctactaatgctctGggggaaaaacaaggccgtct							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8493032	-	-	8493032	6	5	187	0	1	1	0	1	0	0	0	0	12907	1363	47	0		0	PTPRD	9	8493032	Intron	DEL	G	TCGA-64-5774-01A-01D-1625-08	1903679	8493032	132720399	139	149288											
FBXO10	26267	broad.mit.edu	37	chr9	37537272	37537272	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggccagtgccatggcctcCttatccttctgcagctcctg	9	15	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37537272	T	T	37537272	2	4	187	1	0	0	0	0	0	0	0	1	5783	680	24	4		4	FBXO10	9	37537272	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	29044240	37537272	103676159	140	149289											
TMEM2	23670	broad.mit.edu	37	chr9	74340552	74340552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccaatggagtgagttctGgttttgccaagagctgcaat	11	8	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74340552	T	T	74340552	3	4	187	1	0	0	0	0	1	0	0	0	16244	1348	47	2	2084	2	TMEM2	9	74340552	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	36803280	74340552	66872879	141	149290											
TRPM6	140803	broad.mit.edu	37	chr9	77376568	77376568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactaagataggccactacCttgactgctcaaaacctaaa	5	11	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77376568	A	A	77376568	1	1	187	0	1	0	0	0	0	0	0	0	16715	696	24	2		2	TRPM6	9	77376568	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	3036016	77376568	63836863	142	149291											
FAM75C1	441452	broad.mit.edu	37	chr9	90535445	90535445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccttctcctagaacgccCctcacccgagccacctgcac	5	21	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90535445	A	A	90535445	3	1	187	1	0	0	0	0	1	0	0	0	5676	623	22	2	637	2	FAM75C1	9	90535445	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	13158877	90535445	50677986	143	149292											
FAM22F	54754	broad.mit.edu	37	chr9	97090934	97090934	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggcactgaccaccactGtctggcagcttccgcaatga	11	14	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97090934	T	T	97090934	1	4	187	0	1	0	0	0	0	0	0	0	5592	1392	48	3		3	FAM22F	9	97090934	5'Flank	SNP	G	TCGA-64-5774-01A-01D-1625-08	6555489	97090934	44122497	144	149293											
ZNF510	22869	broad.mit.edu	37	chr9	99525533	99525533	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgaggacttagaccagataTatgagattttagtctccaaa	8	7	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99525533	C	C	99525533	1	2	187	0	1	0	0	0	0	0	0	0	18081	1421	49	5		5	ZNF510	9	99525533	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	2434599	99525533	41687898	145	149294											
COL15A1	1306	broad.mit.edu	37	chr9	101812256	101812256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagatcagtctttgtcttgGgccctttctatcctcaaatg	7	10	5	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101812256	T	T	101812256	1	4	187	0	1	0	0	0	0	0	0	0	3704	1247	43	2		2	COL15A1	9	101812256	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	2286723	101812256	39401175	146	149295											
LPPR1	54886	broad.mit.edu	37	chr9	104048594	104048594	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaacacttggtaaaataaActatggaagtatcaacatta	6	6	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104048594	C	C	104048594	1	2	187	0	1	0	0	0	0	0	0	0	9011	58	2	5		5	LPPR1	9	104048594	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	2236338	104048594	37164837	147	149296											
ABCA1	19	broad.mit.edu	37	chr9	107558518	107558518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtgtctactgagagtccCtgccctccttctgacactgg	9	13	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107558518	A	A	107558518	1	1	187	0	1	0	0	0	0	0	0	0	28	696	24	2		2	ABCA1	9	107558518	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	3509924	107558518	33654913	148	149297											
ABCA1	19	broad.mit.edu	37	chr9	107579732	107579732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcagggacggagcaaggCagagccaccagcaccttcgc	15	13	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107579732	A	A	107579732	1	1	187	0	1	0	0	0	0	0	0	0	28	725	25	3		3	ABCA1	9	107579732	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	21214	107579732	33633699	149	149298											
NUP214	8021	broad.mit.edu	37	chr9	134039406	134039406	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtactgatatcttaaaAactgagtcttaatcatttat	4	7	3	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134039406	C	C	134039406	1	2	187	0	1	0	0	0	0	0	0	0	10857	29	1	5		5	NUP214	9	134039406	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	26459674	134039406	7174025	150	149299											
RAPGEF1	2889	broad.mit.edu	37	chr9	134504433	134504434	+	Intron	INS	-	C	C													ggcccgagccctgtcttcctINSccctttctttctcattctgc					rs145807915	by1000genomes	TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134504434	C	C	134504433	6	5	187	0	1	1	1	0	0	0	0	0	13151	1566	54	0		0	RAPGEF1	9	134504433	Intron	INS	-	TCGA-64-5774-01A-01D-1625-08	465027	134504433	6708998	151	149300											
COL5A1	1289	broad.mit.edu	37	chr9	137714942	137714942	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggagggcgacgggtccccTggcacgggaacaaactaccc	16	13	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137714942	A	A	137714942	1	1	187	0	1	0	0	0	0	0	0	0	3728	1595	55	5		5	COL5A1	9	137714942	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	3210509	137714942	3498489	152	149301											
LHX3	8022	broad.mit.edu	37	chr9	139091689	139091689	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccacctgcgtgggcgggaTgcccagctggcacgcggcgc	16	16	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139091689	C	C	139091689	3	2	187	1	0	0	0	0	1	0	0	0	8844	1464	51	5	920	5	LHX3	9	139091689	Missense_Mutation	SNP	T	TCGA-64-5774-01A-01D-1625-08	1376747	139091689	2121742	153	149302											
CUBN	8029	broad.mit.edu	37	chr10	16982064	16982064	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctggaagcccgtgccgcTgccagaaccatctgagataa	12	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16982064	C	C	16982064	3	2	187	1	0	0	0	0	1	0	0	0	4084	1580	55	5	5480	5	CUBN	10	16982064	Missense_Mutation	SNP	T	TCGA-64-5774-01A-01D-1625-08		16982064	118552683	154	149303											
SLC39A12	221074	broad.mit.edu	37	chr10	18270170	18270170	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctagaattcactcctcaagGatgacaactggtggagaatc	9	9	3	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18270170	A	A	18270170	1	1	187	0	1	0	0	0	0	0	0	0	14729	1189	41	4		4	SLC39A12	10	18270170	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1288106	18270170	117264577	155	149304											
ARHGAP21	57584	broad.mit.edu	37	chr10	24874156	24874156	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaactgaagagctgtctccGgctatctaaacttgatgtta	10	8	2	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24874156	A	A	24874156	3	1	187	1	0	0	0	0	1	0	0	0	873	1115	39	4	818	4	ARHGAP21	10	24874156	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	6603986	24874156	110660591	156	149305											
ZEB1	6935	broad.mit.edu	37	chr10	31815998	31815998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgtgaaaaaccacaaGgggatgaggaagaggaggag	16	3	0	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31815998	T	T	31815998	3	4	187	1	0	0	0	0	1	0	0	0	17749	1000	35	2	3229	2	ZEB1	10	31815998	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	6941842	31815998	103718749	157	149306											
ZNF33A	7581	broad.mit.edu	37	chr10	38343661	38343661	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaacacactgagtcatcaTgaggagactttgcagcatga	11	8	2	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38343661	C	C	38343661	2	2	187	1	0	0	0	0	0	0	0	1	17980	1461	51	5		5	ZNF33A	10	38343661	Silent	SNP	T	TCGA-64-5774-01A-01D-1625-08	6527663	38343661	97191086	158	149307											
SLIT1	6585	broad.mit.edu	37	chr10	98807425	98807426	+	Intron	INS	-	G	G													gttagggacaggggagggctINSgggggggccagggaccctca							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98807426	G	G	98807425	6	5	187	0	1	1	1	0	0	0	0	0	14853	1595	55	0		0	SLIT1	10	98807425	Intron	INS	-	TCGA-64-5774-01A-01D-1625-08	60463764	98807425	36727322	159	149308											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118386480	118386480	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acattcgggttgttggggcgGagacagctttcttaatacaa	12	7	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118386480	T	T	118386480	4	4	187	1	0	0	0	0	0	1	0	0	12246	1175	41	3	456	3	PNLIPRP2	10	118386480	Nonsense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	19579055	118386480	17148267	160	149309											
C10orf84	63877	broad.mit.edu	37	chr10	120095077	120095077	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaaacaccttttctggagCgttttcttcttttccctctg	5	12	4	0	rs148686616		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120095077	T	T	120095077	3	4	187	1	0	0	0	0	1	0	0	0	1632	768	27	4	414	4	C10orf84	10	120095077	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	1708597	120095077	15439670	161	149310											
OR56A3	390083	broad.mit.edu	37	chr11	5968696	5968696	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctcagcctccttttcctCttggccgtaggggccaacac	8	18	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5968696	A	A	5968696	2	1	187	1	0	0	0	0	0	0	0	1	11228	900	32	3		3	OR56A3	11	5968696	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08		5968696	129037820	162	149311											
TRIM3	10612	broad.mit.edu	37	chr11	6477727	6477727	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgcggaaggggctgccgCgcactggctgtccgtagagc	17	13	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6477727	A	A	6477727	3	1	187	1	0	0	0	0	1	0	0	0	16628	768	27	3	1033	3	TRIM3	11	6477727	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	509031	6477727	128528789	163	149312											
TRIM3	10612	broad.mit.edu	37	chr11	6478565	6478565	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtctccaggtcgctgacCagagcctgcttgcgctgctg	13	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6478565	G	G	6478565	2	3	187	1	0	0	0	0	0	0	0	1	16628	581	21	4		4	TRIM3	11	6478565	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	838	6478565	128527951	164	149313											
SCUBE2	57758	broad.mit.edu	37	chr11	9096031	9096031	+	Frame_Shift_Del	DEL	C	-	-													cagctgggcagaggtaccttCcgagcggtgaatgcaggtgt							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9096031	-	-	9096031	7	5	187	1	0	1	0	1	0	0	0	0	14058	864	30	0	2652	0	SCUBE2	11	9096031	Frame_Shift_Del	DEL	C	TCGA-64-5774-01A-01D-1625-08	2617466	9096031	125910485	165	149314											
AMBRA1	55626	broad.mit.edu	37	chr11	46419198	46419198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggtaccaggctggtcCcaggaagctgtccgggggct	17	12	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46419198	A	A	46419198	3	1	187	1	0	0	0	0	1	0	0	0	565	624	22	2	201	2	AMBRA1	11	46419198	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	37323167	46419198	88587318	166	149315											
OR4X2	119764	broad.mit.edu	37	chr11	48267190	48267190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctagttccccttctcaaaCttgcctgctctgacaccttc	4	17	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48267190	A	A	48267190	3	1	187	1	0	0	0	0	1	0	0	0	11179	565	20	3	537	3	OR4X2	11	48267190	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	1847992	48267190	86739326	167	149316											
OR8J3	81168	broad.mit.edu	37	chr11	55904448	55904448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcattgtcccatagaaaacCgtgactgctatcatatgcga	8	10	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55904448	A	A	55904448	2	1	187	1	0	0	0	0	0	0	0	1	11336	639	23	1		1	OR8J3	11	55904448	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	7637258	55904448	79102068	168	149317											
C11orf9	745	broad.mit.edu	37	chr11	61533653	61533653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccggggggcaccgggCcccccatcaaggctgagccc	13	19	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61533653	A	A	61533653	3	1	187	1	0	0	0	0	1	0	0	0	1683	739	26	3	391	3	C11orf9	11	61533653	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	5629205	61533653	73472863	169	149318											
SLC22A10	387775	broad.mit.edu	37	chr11	63064675	63064675	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtacacaaaataattagTtaaaatattatcaaatttta	2	3	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63064675	A	A	63064675	1	1	187	0	1	0	0	0	0	0	0	0	14554	1740	60	5		5	SLC22A10	11	63064675	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	1531022	63064675	71941841	170	149319											
RASGRP2	10235	broad.mit.edu	37	chr11	64496329	64496329	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagtacagaatgactcccTcttacctggaggcctggagc	11	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64496329	C	C	64496329	1	2	187	0	1	0	0	0	0	0	0	0	13183	1566	54	5		5	RASGRP2	11	64496329	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	1431654	64496329	70510187	171	149320											
C11orf30	56946	broad.mit.edu	37	chr11	76162966	76162966	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggatctcaccaaggaaaaGaaagatcttcttggagaact	11	7	3	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76162966	T	T	76162966	3	4	187	1	0	0	0	0	1	0	0	0	1648	933	33	3	141	3	C11orf30	11	76162966	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	11666637	76162966	58843550	172	149321											
LRRC32	2615	broad.mit.edu	37	chr11	76372262	76372262	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaggtccagggaggtcacGcgtggcagggggcccaggcc	19	12	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76372262	A	A	76372262	2	1	187	1	0	0	0	0	0	0	0	1	9074	1074	38	4		4	LRRC32	11	76372262	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	209296	76372262	58634254	173	149322											
DLG2	1740	broad.mit.edu	37	chr11	83170879	83170879	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttataacttttcctttgaGggaatccagatgaaaggccc	8	8	0	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83170879	T	T	83170879	2	4	187	1	0	0	0	0	0	0	0	1	4595	987	35	2		2	DLG2	11	83170879	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	6798617	83170879	51835637	174	149323											
DLG2	1740	broad.mit.edu	37	chr11	83177805	83177805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaatgggatagagctggGcaacttgtaaccgcttgata	13	7	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83177805	T	T	83177805	3	4	187	1	0	0	0	0	1	0	0	0	4595	1203	42	3	264	3	DLG2	11	83177805	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	6926	83177805	51828711	175	149324											
SYTL2	54843	broad.mit.edu	37	chr11	85428605	85428605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacattgagaataaataCcattttaacagaaggattaa	7	5	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85428605	A	A	85428605	1	1	187	0	1	0	0	0	0	0	0	0	15602	522	18	3		3	SYTL2	11	85428605	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	2250800	85428605	49577911	176	149325											
TRIM49	57093	broad.mit.edu	37	chr11	89531774	89531774	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagatatcattgttggcttCttcatgatgcagagtaatat	8	5	3	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89531774	A	A	89531774	4	1	187	1	0	0	0	0	0	1	0	0	16649	922	32	3	479	3	TRIM49	11	89531774	Nonsense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	4103169	89531774	45474742	177	149326											
FAT3	120114	broad.mit.edu	37	chr11	92534753	92534753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctccactcggattcccaGcccgaaaaggtaatggaagc	9	14	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92534753	T	T	92534753	3	4	187	1	0	0	0	0	1	0	0	0	5748	962	34	3	8608	3	FAT3	11	92534753	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	3002979	92534753	42471763	178	149327											
MMP8	4317	broad.mit.edu	37	chr11	102586890	102586890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgataatcctagtggtGccccagaacctataaaaaat	7	9	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102586890	T	T	102586890	1	4	187	0	1	0	0	0	0	0	0	0	9762	1334	46	3		3	MMP8	11	102586890	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	10052137	102586890	32419626	179	149328											
MMP13	4322	broad.mit.edu	37	chr11	102816458	102816458	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggatagtctttatccataAtatggttagtatcatcatat	6	6	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102816458	G	G	102816458	3	3	187	1	0	0	0	0	1	0	0	0	9745	101	4	5	191	5	MMP13	11	102816458	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	229568	102816458	32190058	180	149329											
DDI1	414301	broad.mit.edu	37	chr11	103907704	103907704	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagatcatccacatggagCgactcctcatcgaggaccac	8	15	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103907704	A	A	103907704	2	1	187	1	0	0	0	0	0	0	0	1	4361	760	27	3		3	DDI1	11	103907704	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	1091246	103907704	31098812	181	149330											
ATM	472	broad.mit.edu	37	chr11	108153446	108153446	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttcgtgcaggttttagagAaagtttctgaaacttttgga	12	4	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108153446	T	T	108153446	4	4	187	1	0	0	0	0	0	1	0	0	1113	247	9	5	3680	5	ATM	11	108153446	Nonsense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	4245742	108153446	26853070	182	149331											
SCN3B	55800	broad.mit.edu	37	chr11	123524258	123524258	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggttggagaatagcggGgaagggcggtggggaggcgc	24	4	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123524258	A	A	123524258	1	1	187	0	1	0	0	0	0	0	0	0	14032	1247	43	4		4	SCN3B	11	123524258	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	15370812	123524258	11482258	183	149332											
TMEM225	338661	broad.mit.edu	37	chr11	123756006	123756006	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggactgtggttcatcttggCtctttcatcttctgaaatca	8	9	7	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123756006	T	T	123756006	3	4	187	1	0	0	0	0	1	0	0	0	16270	797	28	4	566	4	TMEM225	11	123756006	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	231748	123756006	11250510	184	149333											
C12orf4	57102	broad.mit.edu	37	chr12	4614450	4614450	+	Intron	SNP	T	A	A													ggtataagaaaacagtaattTaaaataaaaagaaatactta							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4614450	A	A	4614450	1	1	187	0	1	0	0	0	0	0	0	0	1698	1769	61	5		5	C12orf4	12	4614450	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08		4614450	129237445	185	149334	646	2									
C12orf4	57102	broad.mit.edu	37	chr12	4614453	4614453	+	Intron	SNP	A	T	T													ataagaaaacagtaatttaaAataaaaagaaatacttacca							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4614453	T	T	4614453	1	4	187	0	1	0	0	0	0	0	0	0	1698	29	1	5		5	C12orf4	12	4614453	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	3	4614453	129237442	186	149335	646	2									
NANOG	79923	broad.mit.edu	37	chr12	7942298	7942298	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctatgcctgtgatttgtGggcctgaagaaaactatcca	9	10	0	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7942298	A	A	7942298	3	1	187	1	0	0	0	0	1	0	0	0	10244	1348	47	4	90	4	NANOG	12	7942298	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	3327845	7942298	125909597	187	149336											
SLC2A3	6515	broad.mit.edu	37	chr12	8073847	8073847	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttaaaaagccattgaagatCcaacaaaccgcagccttggg	8	10	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8073847	A	A	8073847	1	1	187	0	1	0	0	0	0	0	0	0	14659	870	30	3		3	SLC2A3	12	8073847	3'UTR	SNP	C	TCGA-64-5774-01A-01D-1625-08	131549	8073847	125778048	188	149337											
PZP	5858	broad.mit.edu	37	chr12	9305844	9305844	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaaatttgtagaaaaggtCtgtgaatcctgaacggtgac	12	5	1	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9305844	T	T	9305844	2	4	187	1	0	0	0	0	0	0	0	1	12977	912	32	4		4	PZP	12	9305844	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	1231997	9305844	124546051	189	149338											
PZP	5858	broad.mit.edu	37	chr12	9312861	9312861	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tataactgaagcttaattggGaaaagtttcattagagtaac	8	4	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9312861	T	T	9312861	1	4	187	0	1	0	0	0	0	0	0	0	12977	1189	41	3		3	PZP	12	9312861	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	7017	9312861	124539034	190	149339											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	187	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	16085424	25398285	108453610	191	149340											
SYT10	341359	broad.mit.edu	37	chr12	33592259	33592259	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcttgcagcctagcgcgCggggtcccagcggagcgcga	18	13	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33592259	A	A	33592259	1	1	187	0	1	0	0	0	0	0	0	0	15585	783	27	3		3	SYT10	12	33592259	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	8193974	33592259	100259636	192	149341											
DDX23	9416	broad.mit.edu	37	chr12	49231874	49231874	+	Intron	DEL	G	-	-													ggaacttgggctacaaaagaGattggaactgtcaacaaagg							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49231874	-	-	49231874	6	5	187	0	1	1	0	1	0	0	0	0	4383	957	33	0		0	DDX23	12	49231874	Intron	DEL	G	TCGA-64-5774-01A-01D-1625-08	15639615	49231874	84620021	193	149342											
MLL2	8085	broad.mit.edu	37	chr12	49419995	49419995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcgtcagtgaagaccaggtCctccaggccctgctcgatga	13	13	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49419995	A	A	49419995	3	1	187	1	0	0	0	0	1	0	0	0	9714	855	30	3	887	3	MLL2	12	49419995	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	188121	49419995	84431900	194	149343											
SLC4A8	9498	broad.mit.edu	37	chr12	51869097	51869097	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attggccaggtggagaactcCggatgtcctgatgagccaca	13	10	0	3	rs145388094	by1000genomes	TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51869097	G	G	51869097	1	3	187	0	1	0	0	0	0	0	0	0	14773	667	23	4		4	SLC4A8	12	51869097	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	2449102	51869097	81982798	195	149344											
PTGES3	10728	broad.mit.edu	37	chr12	57081865	57081865	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggagtcgacttctctccGgtggcgactccgctttttct	11	12	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57081865	T	T	57081865	1	4	187	0	1	0	0	0	0	0	0	0	12854	1131	39	1		1	PTGES3	12	57081865	5'UTR	SNP	G	TCGA-64-5774-01A-01D-1625-08	5212768	57081865	76770030	196	149345											
DPY19L2	283417	broad.mit.edu	37	chr12	64061909	64061909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcccggagctgcgccaGggaattacggacgaactgga	13	11	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64061909	T	T	64061909	3	4	187	1	0	0	0	0	1	0	0	0	4781	991	35	2	2099	2	DPY19L2	12	64061909	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	6980044	64061909	69789986	197	149346											
GRIP1	23426	broad.mit.edu	37	chr12	66935841	66935841	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatgagaaaagatatttatGgcctccttccattgtaattt	6	6	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66935841	A	A	66935841	1	1	187	0	1	0	0	0	0	0	0	0	6853	1363	47	4		4	GRIP1	12	66935841	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	2873932	66935841	66916054	198	149347											
NTN4	59277	broad.mit.edu	37	chr12	96107067	96107067	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtataacggggcacagtgcTggcagtggctgcctgctgtg	16	9	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96107067	C	C	96107067	3	2	187	1	0	0	0	0	1	0	0	0	10797	1580	55	5	1000	5	NTN4	12	96107067	Missense_Mutation	SNP	T	TCGA-64-5774-01A-01D-1625-08	29171226	96107067	37744828	199	149348											
TCP11L2	255394	broad.mit.edu	37	chr12	106715497	106715497	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgaggttagcacttttGctgtttgcatttcctagagt	11	7	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106715497	A	A	106715497	1	1	187	0	1	0	0	0	0	0	0	0	15837	1334	46	4		4	TCP11L2	12	106715497	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	10608430	106715497	27136398	200	149349											
USP30	84749	broad.mit.edu	37	chr12	109520643	109520643	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccgatttctcttccaccCgcagctccctcagtgtctct	5	19	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109520643	T	T	109520643	1	4	187	0	1	0	0	0	0	0	0	0	17188	667	23	4		4	USP30	12	109520643	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	2805146	109520643	24331252	201	149350											
ACACB	32	broad.mit.edu	37	chr12	109670454	109670454	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caagcagctgcctcatccccGacttgccatcaccttacagg	7	17	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109670454	A	A	109670454	1	1	187	0	1	0	0	0	0	0	0	0	107	1073	37	4		4	ACACB	12	109670454	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	149811	109670454	24181441	202	149351											
RASAL1	8437	broad.mit.edu	37	chr12	113554954	113554954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttctgctggagggtctttgGagagaactccaccttttgag	12	9	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113554954	T	T	113554954	3	4	187	1	0	0	0	0	1	0	0	0	13171	1174	41	3	1815	3	RASAL1	12	113554954	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	3884500	113554954	20296941	203	149352											
TBX5	6910	broad.mit.edu	37	chr12	114832518	114832518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagagcagacggccccaGgcactggttcctgggcttca	13	12	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114832518	T	T	114832518	1	4	187	0	1	0	0	0	0	0	0	0	15783	1015	35	2		2	TBX5	12	114832518	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1277564	114832518	19019377	204	149353											
NUFIP1	26747	broad.mit.edu	37	chr13	45523952	45523952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtatcacagaatgttgtGgtttctcctccttatcagac	9	9	3	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45523952	T	T	45523952	3	4	187	1	0	0	0	0	1	0	0	0	10843	1348	47	2	456	2	NUFIP1	13	45523952	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08		45523952	69645926	205	149354											
FNDC3A	22862	broad.mit.edu	37	chr13	49688903	49688903	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttcttttcatatttgtAtaatagtgataatgttattc	4	3	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49688903	G	G	49688903	1	3	187	0	1	0	0	0	0	0	0	0	6027	464	16	5		5	FNDC3A	13	49688903	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	4164951	49688903	65480975	206	149355											
RBM26	64062	broad.mit.edu	37	chr13	79951664	79951664	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtctctaaaaataaaacCaaacaccatagattaaaaca	3	8	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79951664	T	T	79951664	1	4	187	0	1	0	0	0	0	0	0	0	13234	609	21	4		4	RBM26	13	79951664	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	30262761	79951664	35218214	207	149356											
DZIP1	22873	broad.mit.edu	37	chr13	96242387	96242387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatttaatagtacaaacaGtaaaagagttgccagtgaag	9	5	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96242387	T	T	96242387	1	4	187	0	1	0	0	0	0	0	0	0	4903	1044	36	3		3	DZIP1	13	96242387	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	16290723	96242387	18927491	208	149357											
FAM70B	348013	broad.mit.edu	37	chr13	114507949	114507949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcctacgcaggcttccGcctgacgcccgagcccgtcc	11	20	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114507949	T	T	114507949	3	4	187	1	0	0	0	0	1	0	0	0	5657	1087	38	3	791	3	FAM70B	13	114507949	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	18265562	114507949	661929	209	149358											
POTEG	404785	broad.mit.edu	37	chr14	19563567	19563567	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttacattaaaaggctagTtaatgctaaattgaggttta	8	3	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19563567	G	G	19563567	1	3	187	0	1	0	0	0	0	0	0	0	12362	1740	60	5		5	POTEG	14	19563567	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08		19563567	87785973	210	149359											
TTC5	91875	broad.mit.edu	37	chr14	20764633	20764633	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgaaaagattatcagtGgatcctgtctcaatgttaag	11	5	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20764633	A	A	20764633	1	1	187	0	1	0	0	0	0	0	0	0	16837	1363	47	4		4	TTC5	14	20764633	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1201066	20764633	86584907	211	149360											
MYH7	4625	broad.mit.edu	37	chr14	23894904	23894904	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattagtctcctttcctcacCttggtgtggccaaacttgta	7	11	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23894904	G	G	23894904	3	3	187	1	0	0	0	0	1	0	0	0	10133	695	24	4	3605	4	MYH7	14	23894904	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	3130271	23894904	83454636	212	149361											
JPH4	84502	broad.mit.edu	37	chr14	24040445	24040445	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcgcctgcccccccccActcctcaggccaagctttgg	9	20	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24040445	C	C	24040445	3	2	187	1	0	0	0	0	1	0	0	0	8033	159	6	5	399	5	JPH4	14	24040445	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	145541	24040445	83309095	213	149362											
SEC23A	10484	broad.mit.edu	37	chr14	39560913	39560913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcaaaggcatctgaggaCcacgcttttaaaaaattcac	6	9	3	1	rs148560912		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39560913	A	A	39560913	3	1	187	1	0	0	0	0	1	0	0	0	14104	507	18	3	1990	3	SEC23A	14	39560913	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	15520468	39560913	67788627	214	149363											
SDCCAG1	9147	broad.mit.edu	37	chr14	50272777	50272777	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcactagtgataactcGtgcatcccaagcagcactgt	8	13	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50272777	T	T	50272777	2	4	187	1	0	0	0	0	0	0	0	1	14070	1153	40	3		3	SDCCAG1	14	50272777	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	10711864	50272777	57076763	215	149364											
ACOT2	10965	broad.mit.edu	37	chr14	74036534	74036534	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcctcccgcccggggtgcGgcgcgagccggtgcgcgtgg	18	16	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74036534	C	C	74036534	3	2	187	1	0	0	0	0	1	0	0	0	152	1116	39	4	592	4	ACOT2	14	74036534	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	23763757	74036534	33313006	216	149365											
KCNK10	54207	broad.mit.edu	37	chr14	88652098	88652098	+	Frame_Shift_Del	DEL	G	-	-													tagattttctgaacgtcctcGggcaaggtctttttgaggtc							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88652098	-	-	88652098	7	5	187	1	0	1	0	1	0	0	0	0	8129	1103	39	0	222	0	KCNK10	14	88652098	Frame_Shift_Del	DEL	G	TCGA-64-5774-01A-01D-1625-08	14615564	88652098	18697442	217	149366											
RAGE	5891	broad.mit.edu	37	chr14	102699137	102699137	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taagggccctgtgtggtgggGaatggtttatgactgcagag	17	5	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102699137	C	C	102699137	1	2	187	0	1	0	0	0	0	0	0	0	13114	1189	41	4		4	RAGE	14	102699137	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	14047039	102699137	4650403	218	149367											
OR4M2	390538	broad.mit.edu	37	chr15	22369186	22369186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgatctgtagtagtgGtctgatctctgtggtgtgtt	14	4	3	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22369186	T	T	22369186	3	4	187	1	0	0	0	0	1	0	0	0	11170	1261	44	3	613	3	OR4M2	15	22369186	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08		22369186	80162206	219	149368											
ATPBD4	89978	broad.mit.edu	37	chr15	35830444	35830444	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttaaattacacactaaaTccaatatacttaattggtta	3	6	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35830444	A	A	35830444	1	1	187	0	1	0	0	0	0	0	0	0	1206	1450	50	5		5	ATPBD4	15	35830444	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	13461258	35830444	66700948	220	149369											
TMOD3	29766	broad.mit.edu	37	chr15	52188673	52188673	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggaaaccaacacacatGtgaaatgtttcagtcttgca	7	9	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52188673	A	A	52188673	3	1	187	1	0	0	0	0	1	0	0	0	16358	1377	48	4	707	4	TMOD3	15	52188673	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	16358229	52188673	50342719	221	149370											
MYO1E	4643	broad.mit.edu	37	chr15	59497721	59497721	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaatcgaatttcattgaaCaaaatgtaattaattgaaca	5	4	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59497721	T	T	59497721	1	4	187	0	1	0	0	0	0	0	0	0	10166	493	17	4		4	MYO1E	15	59497721	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	7309048	59497721	43033671	222	149371											
PCSK6	5046	broad.mit.edu	37	chr15	101865129	101865129	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtgatagaacccgcggCggcaagacaggcactgcgtc	16	11	0	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101865129	T	T	101865129	3	4	187	1	0	0	0	0	1	0	0	0	11698	768	27	4	859	4	PCSK6	15	101865129	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	42367408	101865129	666263	223	149372											
NARFL	64428	broad.mit.edu	37	chr16	784383	784383	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacacggggctggcgggggCgcacggcggcccccgcaccc	18	18	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	784383	T	T	784383	1	4	187	0	1	0	0	0	0	0	0	0	10262	783	27	4		4	NARFL	16	784383	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08		784383	89570370	224	149373											
ABCA3	21	broad.mit.edu	37	chr16	2338079	2338079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtgcgtctttcagatgCtctgacagctgctgacccag	11	12	3	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2338079	A	A	2338079	3	1	187	1	0	0	0	0	1	0	0	0	33	796	28	3	2214	3	ABCA3	16	2338079	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	1553696	2338079	88016674	225	149374											
OR2C1	4993	broad.mit.edu	37	chr16	3406340	3406340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggcccctccgctacaccGccatcatgaacccccagctc	7	22	1	1	rs147461021	byFrequency	TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3406340	A	A	3406340	3	1	187	1	0	0	0	0	1	0	0	0	11086	1087	38	4	402	4	OR2C1	16	3406340	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	1068261	3406340	86948413	226	149375											
C16orf71	146562	broad.mit.edu	37	chr16	4790576	4790576	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtggggtgaaggaggcGccctgccacgctgcggagtc	18	10	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4790576	A	A	4790576	2	1	187	1	0	0	0	0	0	0	0	1	1844	1074	38	4		4	C16orf71	16	4790576	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	1384236	4790576	85564177	227	149376											
SMG1	23049	broad.mit.edu	37	chr16	18902113	18902113	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagccagtgggtttgtcttcTtgtgtattgttaagtaattt	10	4	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18902113	A	A	18902113	1	1	187	0	1	0	0	0	0	0	0	0	14909	1624	56	5		5	SMG1	16	18902113	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	14111537	18902113	71452640	228	149377											
PDILT	204474	broad.mit.edu	37	chr16	20384292	20384292	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcccaagcacacacagtGgccccagctccccttcctcc	5	21	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20384292	A	A	20384292	1	1	187	0	1	0	0	0	0	0	0	0	11768	1363	47	4		4	PDILT	16	20384292	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1482179	20384292	69970461	229	149378											
SLC5A11	115584	broad.mit.edu	37	chr16	24874062	24874062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgggattctgtccagcCtttgatatctcaggactctc	10	11	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24874062	A	A	24874062	1	1	187	0	1	0	0	0	0	0	0	0	14777	696	24	2		2	SLC5A11	16	24874062	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	4489770	24874062	65480691	230	149379											
ITFG1	81533	broad.mit.edu	37	chr16	47297273	47297273	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccatgaggtaagctaccaAgccatctaccaagccacctg	8	15	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47297273	C	C	47297273	1	2	187	0	1	0	0	0	0	0	0	0	7939	87	3	5		5	ITFG1	16	47297273	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	22423211	47297273	43057480	231	149380											
ABCC11	85320	broad.mit.edu	37	chr16	48256677	48256677	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagggcaaagcagagtccCactccatggacaacattccc	8	13	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48256677	A	A	48256677	2	1	187	1	0	0	0	0	0	0	0	1	51	581	21	2		2	ABCC11	16	48256677	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	959404	48256677	42098076	232	149381											
NLRC5	84166	broad.mit.edu	37	chr16	57108605	57108605	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagcctcaggtgagtgacCgagcggccccatgggaatga	15	11	1	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57108605	T	T	57108605	1	4	187	0	1	0	0	0	0	0	0	0	10565	667	23	4		4	NLRC5	16	57108605	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	8851928	57108605	33246148	233	149382											
PLEKHG4	25894	broad.mit.edu	37	chr16	67322099	67322099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggcgtccattgccgtaGccccgtttgaccatgacagc	11	15	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67322099	T	T	67322099	3	4	187	1	0	0	0	0	1	0	0	0	12166	971	34	3	3324	3	PLEKHG4	16	67322099	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	10213494	67322099	23032654	234	149383											
HYDIN	54768	broad.mit.edu	37	chr16	70902438	70902438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggaatccaagcatggagGcctggtcagattggtgcttg	15	7	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70902438	A	A	70902438	1	1	187	0	1	0	0	0	0	0	0	0	7537	1218	42	4		4	HYDIN	16	70902438	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	3580339	70902438	19452315	235	149384											
IRF8	3394	broad.mit.edu	37	chr16	85946755	85946755	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccttctgtggacgattacAtggggatgatcaaaaggagc	13	7	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85946755	G	G	85946755	3	3	187	1	0	0	0	0	1	0	0	0	7906	217	8	5	480	5	IRF8	16	85946755	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	15044317	85946755	4407998	236	149385											
DPH1	1801	broad.mit.edu	37	chr17	1939177	1939177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtagggagagaggagctgGgccctgagacaccctcccag	16	11	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1939177	T	T	1939177	1	4	187	0	1	0	0	0	0	0	0	0	4759	1247	43	2		2	DPH1	17	1939177	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08		1939177	79256033	237	149386											
SPNS3	201305	broad.mit.edu	37	chr17	4337281	4337281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggctggggggatgtcaGcggagtgccctgagcctggg	20	9	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4337281	T	T	4337281	3	4	187	1	0	0	0	0	1	0	0	0	15194	971	34	3	21	3	SPNS3	17	4337281	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	2398104	4337281	76857929	238	149387											
SPAG7	9552	broad.mit.edu	37	chr17	4863261	4863261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccccagcccaaacccCcacccctcccaggtggtggg	11	20	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4863261	A	A	4863261	1	1	187	0	1	0	0	0	0	0	0	0	15099	638	22	2		2	SPAG7	17	4863261	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	525980	4863261	76331949	239	149388											
PITPNM3	83394	broad.mit.edu	37	chr17	6358848	6358848	+	Frame_Shift_Del	DEL	G	-	-													tccgcaggaactctggctgcGcgtgcagcccgaagctgccc							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6358848	-	-	6358848	7	5	187	1	0	1	0	1	0	0	0	0	12047	1087	38	0	193	0	PITPNM3	17	6358848	Frame_Shift_Del	DEL	G	TCGA-64-5774-01A-01D-1625-08	1495587	6358848	74836362	240	149389											
FBXO39	162517	broad.mit.edu	37	chr17	6690610	6690610	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtggatgtatttctctgTtggcacaggcgagaatttat	11	5	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6690610	C	C	6690610	1	2	187	0	1	0	0	0	0	0	0	0	5804	1740	60	5		5	FBXO39	17	6690610	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	331762	6690610	74504600	241	149390											
PIK3R5	23533	broad.mit.edu	37	chr17	8791618	8791618	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgctgggggcgtgaagCaggggccagaagccagctgg	21	10	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8791618	T	T	8791618	3	4	187	1	0	0	0	0	1	0	0	0	12017	710	25	4	1196	4	PIK3R5	17	8791618	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	2101008	8791618	72403592	242	149391											
MYH13	8735	broad.mit.edu	37	chr17	10212976	10212976	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcgtcgttccggctgcGgatttcagcatccagcacgc	13	14	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10212976	A	A	10212976	3	1	187	1	0	0	0	0	1	0	0	0	10126	1116	39	4	1020	4	MYH13	17	10212976	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	1421358	10212976	70982234	243	149392											
MYH2	4620	broad.mit.edu	37	chr17	10426814	10426814	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatattgggagacccaccCtggcctccagtttctggatc	10	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10426814	T	T	10426814	3	4	187	1	0	0	0	0	1	0	0	0	10129	695	24	4	370	4	MYH2	17	10426814	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	213838	10426814	70768396	244	149393											
DNAH9	1770	broad.mit.edu	37	chr17	11660046	11660046	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actccacttagggaggtaccTctggcttcacacgtagtttt	9	11	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11660046	A	A	11660046	1	1	187	0	1	0	0	0	0	0	0	0	4648	1566	54	5		5	DNAH9	17	11660046	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	1233232	11660046	69535164	245	149394											
DNAH9	1770	broad.mit.edu	37	chr17	11778242	11778242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcttctgttctgagcgtGgggtggtgtttcttcttcac	12	9	6	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11778242	T	T	11778242	1	4	187	0	1	0	0	0	0	0	0	0	4648	1363	47	2		2	DNAH9	17	11778242	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	118196	11778242	69416968	246	149395											
DNAH9	1770	broad.mit.edu	37	chr17	11790297	11790297	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaaggtgacttacacctgGagtttcttgcctgattataa	8	9	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11790297	T	T	11790297	1	4	187	0	1	0	0	0	0	0	0	0	4648	1189	41	3		3	DNAH9	17	11790297	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	12055	11790297	69404913	247	149396											
GAS2L2	246176	broad.mit.edu	37	chr17	34072791	34072791	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtaggcccaggtcccaGgactctctggcctctgccat	10	16	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34072791	T	T	34072791	2	4	187	1	0	0	0	0	0	0	0	1	6309	987	35	2		2	GAS2L2	17	34072791	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	22282494	34072791	47122419	248	149397											
MLLT6	4302	broad.mit.edu	37	chr17	36873066	36873066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcactgggggcccagctGccccatccttgcccagtgcc	13	17	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36873066	T	T	36873066	3	4	187	1	0	0	0	0	1	0	0	0	9723	1319	46	3	1521	3	MLLT6	17	36873066	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	2800275	36873066	44322144	249	149398											
KRT12	3859	broad.mit.edu	37	chr17	39021155	39021155	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcagctcgtccagcaccCggcgcaggccattgatgtcg	14	14	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39021155	T	T	39021155	3	4	187	1	0	0	0	0	1	0	0	0	8520	652	23	4	798	4	KRT12	17	39021155	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	2148089	39021155	42174055	250	149399											
BECN1	8678	broad.mit.edu	37	chr17	40962818	40962818	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacacccaagcaagacccCacttaagattcgtcagcatg	8	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40962818	A	A	40962818	3	1	187	1	0	0	0	0	1	0	0	0	1401	595	21	2	43	2	BECN1	17	40962818	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	1941663	40962818	40232392	251	149400											
ADAM11	4185	broad.mit.edu	37	chr17	42857162	42857162	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcctggcacccaccgtctCggccctgaaccacgaggctg	11	17	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42857162	A	A	42857162	1	1	187	0	1	0	0	0	0	0	0	0	235	899	31	3		3	ADAM11	17	42857162	3'UTR	SNP	C	TCGA-64-5774-01A-01D-1625-08	1894344	42857162	38338048	252	149401											
WNT9B	7484	broad.mit.edu	37	chr17	44950100	44950100	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttccggcatgagcgctggAactgtagcctggagggcagg	17	9	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44950100	T	T	44950100	3	4	187	1	0	0	0	0	1	0	0	0	17526	246	9	5	301	5	WNT9B	17	44950100	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	2092938	44950100	36245110	253	149402											
SNX11	29916	broad.mit.edu	37	chr17	46196199	46196199	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgctggccaccaagggTggaggcaggggtggaggaat	20	7	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46196199	G	G	46196199	1	3	187	0	1	0	0	0	0	0	0	0	14996	1711	59	5		5	SNX11	17	46196199	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	1246099	46196199	34999011	254	149403											
ABI3	51225	broad.mit.edu	37	chr17	47299555	47299555	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatttgggcctgatgagcCcagctgggtgcctgcctcat	14	11	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47299555	A	A	47299555	3	1	187	1	0	0	0	0	1	0	0	0	90	623	22	2	931	2	ABI3	17	47299555	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	1103356	47299555	33895655	255	149404											
ITGA3	3675	broad.mit.edu	37	chr17	48148419	48148419	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactagcacacacggattgGccggcacctgtatgccaggc	11	13	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48148419	T	T	48148419	1	4	187	0	1	0	0	0	0	0	0	0	7947	1218	42	3		3	ITGA3	17	48148419	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	848864	48148419	33046791	256	149405											
ABCC3	8714	broad.mit.edu	37	chr17	48764867	48764867	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaggtgggaggcccccaGctggaaatgcctgccttctc	14	13	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48764867	A	A	48764867	1	1	187	0	1	0	0	0	0	0	0	0	54	986	34	4		4	ABCC3	17	48764867	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	616448	48764867	32430343	257	149406											
HEATR6	63897	broad.mit.edu	37	chr17	58144704	58144704	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccccagaaatcaggctcttCaagttaaatcacatgcagca	6	13	4	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58144704	T	T	58144704	1	4	187	0	1	0	0	0	0	0	0	0	7100	841	29	4		4	HEATR6	17	58144704	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	9379837	58144704	23050506	258	149407											
FTSJ3	117246	broad.mit.edu	37	chr17	61901032	61901032	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttatgtttctttgtggccTtatactcaccaaggcaccct	7	11	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61901032	A	A	61901032	1	1	187	0	1	0	0	0	0	0	0	0	6149	1624	56	5		5	FTSJ3	17	61901032	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	3756328	61901032	19294178	259	149408											
CACNG4	27092	broad.mit.edu	37	chr17	65014295	65014295	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtgttcttttcctctcgTtccttccagggatctataaa	6	11	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65014295	C	C	65014295	1	2	187	0	1	0	0	0	0	0	0	0	2585	1740	60	5		5	CACNG4	17	65014295	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	3113263	65014295	16180915	260	149409											
CD300A	11314	broad.mit.edu	37	chr17	72470585	72470585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttccttagtgggcagtttGtgtgaaatcaaaccaaaaag	9	8	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72470585	A	A	72470585	1	1	187	0	1	0	0	0	0	0	0	0	3026	1392	48	4		4	CD300A	17	72470585	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	7456290	72470585	8724625	261	149410											
OTOP2	92736	broad.mit.edu	37	chr17	72921565	72921565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccacccatctagcctcccAtcctcagggcctgtcctcag	6	20	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72921565	G	G	72921565	1	3	187	0	1	0	0	0	0	0	0	0	11400	232	8	5		5	OTOP2	17	72921565	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	450980	72921565	8273645	262	149411											
PGS1	9489	broad.mit.edu	37	chr17	76397305	76397305	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggtgacaaactcaggtcAggacgcagttaacaaatagc	13	8	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76397305	C	C	76397305	1	2	187	0	1	0	0	0	0	0	0	0	11903	203	7	5		5	PGS1	17	76397305	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	3475740	76397305	4797905	263	149412											
DNAH17	8632	broad.mit.edu	37	chr17	76503840	76503840	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtccgcgggtgcggctcGtgctggaattccatcatgct	13	13	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76503840	A	A	76503840	2	1	187	1	0	0	0	0	0	0	0	1	4641	1136	40	4		4	DNAH17	17	76503840	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	106535	76503840	4691370	264	149413											
PPP4R1	9989	broad.mit.edu	37	chr18	9584852	9584852	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataagtaagaacaaacacacActgaaaatatcaagtaagcc	5	8	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9584852	T	T	9584852	1	4	187	0	1	0	0	0	0	0	0	0	12504	174	6	5		5	PPP4R1	18	9584852	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08		9584852	68492396	265	149414											
ANKRD30B	374860	broad.mit.edu	37	chr18	14798976	14798976	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccaaaagaccccaaaacCtagtgtaatcccttttcaat	3	13	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14798976	T	T	14798976	1	4	187	0	1	0	0	0	0	0	0	0	659	696	24	4		4	ANKRD30B	18	14798976	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	5214124	14798976	63278272	266	149415											
ZNF521	25925	broad.mit.edu	37	chr18	22804516	22804516	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcaatggcactcagattCtcattctggcccaagcctgg	8	15	4	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22804516	T	T	22804516	2	4	187	1	0	0	0	0	0	0	0	1	18092	912	32	4		4	ZNF521	18	22804516	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	8005540	22804516	55272732	267	149416											
FHOD3	80206	broad.mit.edu	37	chr18	34324204	34324204	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtctcgctgcagccacGggatctttatcggtcatcct	10	14	3	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34324204	A	A	34324204	1	1	187	0	1	0	0	0	0	0	0	0	5940	1131	39	4		4	FHOD3	18	34324204	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	11519688	34324204	43753044	268	149417											
MAPK4	5596	broad.mit.edu	37	chr18	48252326	48252326	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgtccggctttgctccCtgcagccatcgactttctgg	9	14	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48252326	T	T	48252326	1	4	187	0	1	0	0	0	0	0	0	0	9372	696	24	4		4	MAPK4	18	48252326	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	13928122	48252326	29824922	269	149418											
ALPK2	115701	broad.mit.edu	37	chr18	56184097	56184097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcgtcttatcatgggtgGttctcacaccagaagtgaca	9	10	4	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56184097	T	T	56184097	1	4	187	0	1	0	0	0	0	0	0	0	545	1276	44	3		3	ALPK2	18	56184097	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	7931771	56184097	21893151	270	149419											
ZNF532	55205	broad.mit.edu	37	chr18	56651409	56651409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttcttcctaccagtgccGggagtgtggcctctgctaca	12	12	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56651409	T	T	56651409	3	4	187	1	0	0	0	0	1	0	0	0	18099	1116	39	1	3647	1	ZNF532	18	56651409	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	467312	56651409	21425839	271	149420											
SPPL2B	56928	broad.mit.edu	37	chr19	2337525	2337525	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtggcttcagcaaccagatCccgctggtggcgcgggggaa	16	12	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2337525	A	A	2337525	2	1	187	1	0	0	0	0	0	0	0	1	15207	845	30	3		3	SPPL2B	19	2337525	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08		2337525	56791458	272	149421											
ACER1	125981	broad.mit.edu	37	chr19	6306758	6306758	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaccccggatttccacGtagggcagccccacgggcca	10	17	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6306758	T	T	6306758	4	4	187	1	0	0	0	0	0	1	0	0	138	1140	40	3	36	3	ACER1	19	6306758	Nonsense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	3969233	6306758	52822225	273	149422											
STXBP2	6813	broad.mit.edu	37	chr19	7706880	7706880	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaacccatccttgaccccAtcccctgatgatgtcccccg	5	19	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7706880	G	G	7706880	1	3	187	0	1	0	0	0	0	0	0	0	15471	232	8	5		5	STXBP2	19	7706880	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	1400122	7706880	51422103	274	149423											
CACNA1A	773	broad.mit.edu	37	chr19	13418663	13418663	+	Frame_Shift_Del	DEL	T	-	-													gaggagtcccttcatcgaaaTtaaacctgcagggaggacac							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13418663	-	-	13418663	7	5	187	1	0	1	0	1	0	0	0	0	2564	1493	52	0	5844	0	CACNA1A	19	13418663	Frame_Shift_Del	DEL	T	TCGA-64-5774-01A-01D-1625-08	5711783	13418663	45710320	275	149424											
KIAA0892	23383	broad.mit.edu	37	chr19	19459785	19459785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactccacgcacggcctagGctccccgtgctctttggttg	10	17	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19459785	T	T	19459785	1	4	187	0	1	0	0	0	0	0	0	0	8266	1218	42	3		3	KIAA0892	19	19459785	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	6041122	19459785	39669198	276	149425											
CCNE1	898	broad.mit.edu	37	chr19	30314605	30314606	+	Missense_Mutation	DNP	GG	CT	CT													catgttgtctgaacaaaataGggcttctcctctccccagtg							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	30314606	CT	CT	30314605	3	2	187	1	0	0	0	0	1	0	0	0	2950	1000	35	4	1196	4	CCNE1	19	30314605	Missense_Mutation	DNP	GG	TCGA-64-5774-01A-01D-1625-08	10854820	30314605	28814378	277	149426											
TSHZ3	57616	broad.mit.edu	37	chr19	31770491	31770491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcgctgtccatttcatGgcaggaaaactcggcggccg	12	12	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31770491	T	T	31770491	3	4	187	1	0	0	0	0	1	0	0	0	16750	1348	47	2	3041	2	TSHZ3	19	31770491	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	1455886	31770491	27358492	278	149427											
ZNF567	163081	broad.mit.edu	37	chr19	37203794	37203794	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttctggctcttaggcagaCacagtctagcagaatgtaaa	10	8	3	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37203794	A	A	37203794	1	1	187	0	1	0	0	0	0	0	0	0	18125	493	17	3		3	ZNF567	19	37203794	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	5433303	37203794	21925189	279	149428											
IL28B	282617	broad.mit.edu	37	chr19	39735154	39735154	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctagacagcaaaggcacagGttagccccagcaggaggggt	14	11	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39735154	C	C	39735154	1	2	187	0	1	0	0	0	0	0	0	0	7753	1276	44	4		4	IL28B	19	39735154	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	2531360	39735154	19393829	280	149429											
IL28B	282617	broad.mit.edu	37	chr19	39735177	39735177	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccccagcaggaggggtggAggttagaccactctgatggg	17	9	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39735177	T	T	39735177	1	4	187	0	1	0	0	0	0	0	0	0	7753	319	11	5		5	IL28B	19	39735177	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	23	39735177	19393806	281	149430											
SUPT5H	6829	broad.mit.edu	37	chr19	39943972	39943972	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtagcagaattctggtgcTacaaccctgcctgacccctg	11	13	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39943972	C	C	39943972	1	2	187	0	1	0	0	0	0	0	0	0	15517	1537	53	5		5	SUPT5H	19	39943972	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	208795	39943972	19185011	282	149431											
BCKDHA	593	broad.mit.edu	37	chr19	41895839	41895839	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaggaaatggttaagtttCttttttttttttttggagat	8	3	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41895839	T	T	41895839	1	4	187	0	1	0	0	0	0	0	0	0	1364	928	32	4		4	BCKDHA	19	41895839	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	1951867	41895839	17233144	283	149432											
DMPK	1760	broad.mit.edu	37	chr19	46282850	46282850	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcgcccagacccaactccAcccgcttctgcacccagccg	7	22	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46282850	C	C	46282850	1	2	187	0	1	0	0	0	0	0	0	0	4624	174	6	5		5	DMPK	19	46282850	Intron	SNP	A	TCGA-64-5774-01A-01D-1625-08	4387011	46282850	12846133	284	149433											
CRX	1406	broad.mit.edu	37	chr19	48337585	48337585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctaagaggagaaggaggCaggatttgaatcgcagcctg	14	7	0	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48337585	A	A	48337585	1	1	187	0	1	0	0	0	0	0	0	0	3934	725	25	3		3	CRX	19	48337585	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	2054735	48337585	10791398	285	149434											
POLD1	5424	broad.mit.edu	37	chr19	50902844	50902844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcctggggcagaggccgGgccaggtcagcccctctggc	16	15	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50902844	T	T	50902844	1	4	187	0	1	0	0	0	0	0	0	0	12285	1247	43	2		2	POLD1	19	50902844	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	2565259	50902844	8226139	286	149435											
ZNF83	55769	broad.mit.edu	37	chr19	53156033	53156033	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaataagtgatgactgcccaCtaaaggctttgccacactca	8	11	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53156033	G	G	53156033	1	3	187	0	1	0	0	0	0	0	0	0	18312	580	20	4		4	ZNF83	19	53156033	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	2253189	53156033	5972950	287	149436											
KIR3DL1	3811	broad.mit.edu	37	chr19	55331209	55331209	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggcccacccaggtcccCtggtgaaatcaggagagaga	12	13	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55331209	T	T	55331209	2	4	187	1	0	0	0	0	0	0	0	1	8391	680	24	4		4	KIR3DL1	19	55331209	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	2175176	55331209	3797774	288	149437											
SYT5	6861	broad.mit.edu	37	chr19	55686195	55686195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctcagaaactgtcagaaCgagaacccaccccacgccat	8	15	2	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55686195	A	A	55686195	1	1	187	0	1	0	0	0	0	0	0	0	15596	551	19	3		3	SYT5	19	55686195	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	354986	55686195	3442788	289	149438											
NLRP8	126205	broad.mit.edu	37	chr19	56466759	56466759	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgagaacttttccagaaaGatccaccaagcacaactgga	8	11	0	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56466759	A	A	56466759	2	1	187	1	0	0	0	0	0	0	0	1	10578	933	33	4		4	NLRP8	19	56466759	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	780564	56466759	2662224	290	149439											
ZNF671	79891	broad.mit.edu	37	chr19	58232780	58232780	+	Frame_Shift_Del	DEL	C	-	-													agcttttcacagagtctctgCcctccttccttgggaaaagt							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58232780	-	-	58232780	7	5	187	1	0	1	0	1	0	0	0	0	18205	739	26	0	934	0	ZNF671	19	58232780	Frame_Shift_Del	DEL	C	TCGA-64-5774-01A-01D-1625-08	1766021	58232780	896203	291	149440											
SIRPB1	10326	broad.mit.edu	37	chr20	1559087	1559087	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgccggcgtctgctggggtGatgttactgatgctgatgga	17	7	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1559087	T	T	1559087	2	4	187	1	0	0	0	0	0	0	0	1	14446	1280	45	3		3	SIRPB1	20	1559087	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08		1559087	61466433	292	149441											
MACROD2	140733	broad.mit.edu	37	chr20	16021755	16021755	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaggagtatttttgaattTaaaagggcaatggagggtga	13	4	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16021755	A	A	16021755	1	1	187	0	1	0	0	0	0	0	0	0	9234	1769	61	5		5	MACROD2	20	16021755	Intron	SNP	T	TCGA-64-5774-01A-01D-1625-08	14462668	16021755	47003765	293	149442											
NAPB	63908	broad.mit.edu	37	chr20	23377872	23377872	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggaacaagtcccccccaGagcagcccatgctgtaagca	10	14	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23377872	A	A	23377872	1	1	187	0	1	0	0	0	0	0	0	0	10256	957	33	4		4	NAPB	20	23377872	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	7356117	23377872	39647648	294	149443											
DEFB115	245929	broad.mit.edu	37	chr20	29847303	29847304	+	Frame_Shift_Ins	INS	-	A	A													attatggaactggcagatgcINSaggaaatcatgcaaagaaat							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29847304	A	A	29847303	7	5	187	1	0	1	1	0	0	0	0	0	4443	718	25	0	141	0	DEFB115	20	29847303	Frame_Shift_Ins	INS	-	TCGA-64-5774-01A-01D-1625-08	6469431	29847303	33178217	295	149444											
MYLK2	85366	broad.mit.edu	37	chr20	30408221	30408221	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaagcccaaggctgagcaGggagcctcaggcagccagga	15	11	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30408221	A	A	30408221	2	1	187	1	0	0	0	0	0	0	0	1	10151	991	35	4		4	MYLK2	20	30408221	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	560918	30408221	32617299	296	149445											
TTLL9	164395	broad.mit.edu	37	chr20	30525160	30525160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctaggggctccagggacCgagtaaccctaagactctct	10	13	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30525160	T	T	30525160	1	4	187	0	1	0	0	0	0	0	0	0	16860	667	23	4		4	TTLL9	20	30525160	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	116939	30525160	32500360	297	149446											
MYBL2	4605	broad.mit.edu	37	chr20	42331478	42331478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaccagtctgtccttcctgGattcctgtaacagcctcacg	8	15	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42331478	T	T	42331478	3	4	187	1	0	0	0	0	1	0	0	0	10104	1174	41	3	1330	3	MYBL2	20	42331478	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	11806318	42331478	20694042	298	149447											
SLC12A5	57468	broad.mit.edu	37	chr20	44685923	44685923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctgggcctccccgcaaCcgcaatggtgatgaaaactg	11	13	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44685923	A	A	44685923	3	1	187	1	0	0	0	0	1	0	0	0	14499	506	18	3	3463	3	SLC12A5	20	44685923	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	2354445	44685923	18339597	299	149448											
SLC2A10	81031	broad.mit.edu	37	chr20	45355567	45355567	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagccttcgccttctgCaacagcttcaactgggcggc	12	13	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45355567	G	G	45355567	3	3	187	1	0	0	0	0	1	0	0	0	14653	718	25	4	1363	4	SLC2A10	20	45355567	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	669644	45355567	17669953	300	149449											
ATP9A	10079	broad.mit.edu	37	chr20	50244178	50244178	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgcaagagacttcttTgccaccacgagcacccgcag	8	16	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50244178	C	C	50244178	2	2	187	1	0	0	0	0	0	0	0	1	1202	1799	63	5		5	ATP9A	20	50244178	Silent	SNP	T	TCGA-64-5774-01A-01D-1625-08	4888611	50244178	12781342	301	149450											
ZNF831	128611	broad.mit.edu	37	chr20	57769769	57769769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagcaatggaggatggaCctggacaagccctggagaag	17	7	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57769769	A	A	57769769	3	1	187	1	0	0	0	0	1	0	0	0	18314	507	18	3	3697	3	ZNF831	20	57769769	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	7525591	57769769	5255751	302	149451											
LAMA5	3911	broad.mit.edu	37	chr20	60913645	60913645	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggcgttgccctgggtcccTgccgcgctgcagtcacaatc	12	16	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60913645	A	A	60913645	2	1	187	1	0	0	0	0	0	0	0	1	8681	1567	55	5		5	LAMA5	20	60913645	Silent	SNP	T	TCGA-64-5774-01A-01D-1625-08	3143876	60913645	2111875	303	149452											
CHODL	140578	broad.mit.edu	37	chr21	19638462	19638462	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacaaaggatctgcaagatGaactgtaagctcccccttga	8	11	2	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19638462	T	T	19638462	1	4	187	0	1	0	0	0	0	0	0	0	3395	1305	45	3		3	CHODL	21	19638462	3'UTR	SNP	G	TCGA-64-5774-01A-01D-1625-08		19638462	28491433	304	149453											
ADAMTS5	11096	broad.mit.edu	37	chr21	28315732	28315732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaattctgtgatggtggCtgaagtgcatttggaccagg	15	6	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28315732	A	A	28315732	3	1	187	1	0	0	0	0	1	0	0	0	269	797	28	3	1444	3	ADAMTS5	21	28315732	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	8677270	28315732	19814163	305	149454											
RIPK4	54101	broad.mit.edu	37	chr21	43187057	43187057	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcgagcacttgatggCcagccaggtcttccagtgga	15	11	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43187057	T	T	43187057	3	4	187	1	0	0	0	0	1	0	0	0	13494	739	26	4	2241	4	RIPK4	21	43187057	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	14871325	43187057	4942838	306	149455											
FTCD	10841	broad.mit.edu	37	chr21	47556403	47556403	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaggtcctgctgtccctgGggtttctgtcccatgcacag	12	13	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47556403	T	T	47556403	1	4	187	0	1	0	0	0	0	0	0	0	6141	1247	43	2		2	FTCD	21	47556403	3'UTR	SNP	G	TCGA-64-5774-01A-01D-1625-08	4369346	47556403	573492	307	149456											
POTEH	23784	broad.mit.edu	37	chr22	16279396	16279396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataagatcttatggacttaCatgcatagaaagtaaataaa	6	4	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16279396	A	A	16279396	1	1	187	0	1	0	0	0	0	0	0	0	12363	493	17	3		3	POTEH	22	16279396	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08		16279396	35025170	308	149457											
MYO18B	84700	broad.mit.edu	37	chr22	26165124	26165124	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctcggagtcagacagagaAgggctgtgaagccccaaagg	15	9	1	3			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26165124	T	T	26165124	3	4	187	1	0	0	0	0	1	0	0	0	10160	72	3	5	1251	5	MYO18B	22	26165124	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08	9885728	26165124	25139442	309	149458											
SH3BP1	23616	broad.mit.edu	37	chr22	38046636	38046636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcctctgaggaacttccgtCcactgccgtgcccaccccag	10	18	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38046636	T	T	38046636	3	4	187	1	0	0	0	0	1	0	0	0	14357	855	30	4	1564	4	SH3BP1	22	38046636	Missense_Mutation	SNP	C	TCGA-64-5774-01A-01D-1625-08	11881512	38046636	13257930	310	149459											
EP300	2033	broad.mit.edu	37	chr22	41568503	41568503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtacatgcatgttttcacagGatatttttaaacaagctact	6	7	1	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41568503	T	T	41568503	3	4	187	1	0	0	0	0	1	0	0	0	5190	1188	41	3	4563	3	EP300	22	41568503	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	3521867	41568503	9736063	311	149460											
SAMM50	25813	broad.mit.edu	37	chr22	44385190	44385190	+	Intron	DEL	A	-	-													gtacagttgttttcatgtttAaaagcacagtacacaaagag							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44385190	-	-	44385190	6	5	187	0	1	1	0	1	0	0	0	0	13940	377	13	0		0	SAMM50	22	44385190	Intron	DEL	A	TCGA-64-5774-01A-01D-1625-08	2816687	44385190	6919376	312	149461											
CSF2RA	1438	broad.mit.edu	37	chrX	1409478	1409479	+	Intron	DNP	CC	AA	AA													taaaatctgtgtaactgaggCcacgtgcggtgtctcacacc							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	1409479	AA	AA	1409478	1	1	187	0	1	0	0	0	0	0	0	0	3968	754	26	3		3	CSF2RA	23	1409478	Intron	DNP	CC	TCGA-64-5774-01A-01D-1625-08		1409478	153861082	313	149462											
CD99	4267	broad.mit.edu	37	chrX	2641502	2641502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggactgcactggcattggCctcctaaagctactggcagg	13	12	0	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2641502	T	T	2641502	1	4	187	0	1	0	0	0	0	0	0	0	3080	754	26	4		4	CD99	23	2641502	Intron	SNP	C	TCGA-64-5774-01A-01D-1625-08	1232024	2641502	152629058	314	149463											
FAM47A	158724	broad.mit.edu	37	chrX	34150162	34150162	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctctgagagatattttgggGagtaaaaactcgtcacggcg	12	8	2	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34150162	T	T	34150162	2	4	187	1	0	0	0	0	0	0	0	1	5620	1161	41	3		3	FAM47A	23	34150162	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	31508660	34150162	121120398	315	149464											
TMEM47	83604	broad.mit.edu	37	chrX	34648384	34648384	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagatgcagacgtaatcCttttgttggatggtggtggt	14	4	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648384	A	A	34648384	1	1	187	0	1	0	0	0	0	0	0	0	16294	696	24	2		2	TMEM47	23	34648384	3'UTR	SNP	C	TCGA-64-5774-01A-01D-1625-08	498222	34648384	120622176	316	149465											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	187	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-64-5774-01A-01D-1625-08	19004463	53652847	101617713	317	149466											
NXF2B	728343	broad.mit.edu	37	chrX	101623732	101623732	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatctccatttggcctggCttcaacttattcttcacaga	6	12	4	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101623732	T	T	101623732	2	4	187	1	0	0	0	0	0	0	0	1	10879	796	28	4		4	NXF2B	23	101623732	Silent	SNP	C	TCGA-64-5774-01A-01D-1625-08	47970885	101623732	53646828	318	149467											
AMOT	154796	broad.mit.edu	37	chrX	112058575	112058575	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccctaatatcccaaaacGgaagcctcaccttctgcagt	6	14	2	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112058575	A	A	112058575	1	1	187	0	1	0	0	0	0	0	0	0	582	1131	39	4		4	AMOT	23	112058575	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	10434843	112058575	43211985	319	149468											
GPR112	139378	broad.mit.edu	37	chrX	135428901	135428901	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacccctgtgcctgttacTcatatgttctcattgccagt	7	13	2	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135428901	C	C	135428901	2	2	187	1	0	0	0	0	0	0	0	1	6694	1538	54	5		5	GPR112	23	135428901	Silent	SNP	T	TCGA-64-5774-01A-01D-1625-08	23370326	135428901	19841659	320	149469											
MCF2	4168	broad.mit.edu	37	chrX	138697092	138697092	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccaaattttcaggtgtGggtaccacaaattggattgg	12	6	1	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138697092	T	T	138697092	2	4	187	1	0	0	0	0	0	0	0	1	9471	1335	47	2		2	MCF2	23	138697092	Silent	SNP	G	TCGA-64-5774-01A-01D-1625-08	3268191	138697092	16573468	321	149470											
MAGEC2	51438	broad.mit.edu	37	chrX	141291938	141291938	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcttcttctcttaaggtgGtgctctagggcctcacaggt	11	11	5	0			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141291938	C	C	141291938	1	2	187	0	1	0	0	0	0	0	0	0	9273	1276	44	4		4	MAGEC2	23	141291938	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	2594846	141291938	13978622	322	149471											
MAMLD1	10046	broad.mit.edu	37	chrX	149638350	149638350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgagaaaatcaacagcGtgccggctgtagaccaggag	12	9	1	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149638350	T	T	149638350	3	4	187	1	0	0	0	0	1	0	0	0	9300	1145	40	3	515	3	MAMLD1	23	149638350	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	8346412	149638350	5632210	323	149472											
MTMR1	8776	broad.mit.edu	37	chrX	149867658	149867658	+	Intron	DEL	T	-	-													acgttttgtaatccatgctaTtttttttagtcccacaggat							TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149867658	-	-	149867658	6	5	187	0	1	1	0	1	0	0	0	0	10032	1508	52	0		0	MTMR1	23	149867658	Intron	DEL	T	TCGA-64-5774-01A-01D-1625-08	229308	149867658	5402902	324	149473											
CNGA2	1260	broad.mit.edu	37	chrX	150909383	150909383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggccaggtgagcaggGtggggcccaggaggggtggc	23	8	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150909383	T	T	150909383	1	4	187	0	1	0	0	0	0	0	0	0	3629	1276	44	3		3	CNGA2	23	150909383	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1041725	150909383	4361177	325	149474											
MAGEA6	4105	broad.mit.edu	37	chrX	151869776	151869776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatcttcagcaaagcttccGattccttgcagctggtcttt	8	11	3	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151869776	T	T	151869776	3	4	187	1	0	0	0	0	1	0	0	0	9260	1058	37	3	468	3	MAGEA6	23	151869776	Missense_Mutation	SNP	G	TCGA-64-5774-01A-01D-1625-08	960393	151869776	3400784	326	149475											
MAGEA6	4105	broad.mit.edu	37	chrX	151870260	151870260	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagggggaagagtgagtctGagcacgagttgcagccaggg	19	6	1	4			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151870260	C	C	151870260	1	2	187	0	1	0	0	0	0	0	0	0	9260	1305	45	4		4	MAGEA6	23	151870260	3'UTR	SNP	G	TCGA-64-5774-01A-01D-1625-08	484	151870260	3400300	327	149476											
L1CAM	3897	broad.mit.edu	37	chrX	153138240	153138240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatcgtgagggaagcagGgtccagagcccctggaggcc	15	13	0	2			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153138240	T	T	153138240	1	4	187	0	1	0	0	0	0	0	0	0	8660	1247	43	2		2	L1CAM	23	153138240	Intron	SNP	G	TCGA-64-5774-01A-01D-1625-08	1267980	153138240	2132320	328	149477											
AMELY	266	broad.mit.edu	37	chrY	6736166	6736166	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggggccgcagggggaacAttggaggcagaggtggctgt	21	7	0	1			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6736166	T	T	6736166	3	4	187	1	0	0	0	0	1	0	0	0	570	217	8	5	101	5	AMELY	24	6736166	Missense_Mutation	SNP	A	TCGA-64-5774-01A-01D-1625-08		6736166	52637400	329	149478											
KLHL17	339451	broad.mit.edu	37	chr1	898278	898278	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcgctgcgagggggccggGcctgtgctttttgctgtggg	20	10	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	898278	A	A	898278	2	1	188	1	0	0	0	0	0	0	0	1	8443	1190	42	4		4	KLHL17	1	898278	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08		898278	248352343	1	149479											
AGRN	375790	broad.mit.edu	37	chr1	981168	981168	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgtgagcagatgacgggGctgtgctcgtgtaagcccgg	17	9	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	981168	A	A	981168	2	1	188	1	0	0	0	0	0	0	0	1	397	1190	42	4		4	AGRN	1	981168	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	82890	981168	248269453	2	149480											
AGRN	375790	broad.mit.edu	37	chr1	986125	986125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcagggagccagtcaccCtgggagcctggaccagggtc	17	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	986125	A	A	986125	3	1	188	1	0	0	0	0	1	0	0	0	397	680	24	2	5279	2	AGRN	1	986125	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	4957	986125	248264496	3	149481											
KIAA1751	85452	broad.mit.edu	37	chr1	1887107	1887107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgcccgcccaccctggCttggcctggcagcctggctc	11	20	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1887107	A	A	1887107	3	1	188	1	0	0	0	0	1	0	0	0	8326	796	28	3	93	3	KIAA1751	1	1887107	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	900982	1887107	247363514	4	149482											
HES3	390992	broad.mit.edu	37	chr1	6305549	6305549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcggccctggggaagcccCggggatgacctgaactgaag	17	11	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6305549	A	A	6305549	2	1	188	1	0	0	0	0	0	0	0	1	7134	639	23	1		1	HES3	1	6305549	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	4418442	6305549	242945072	5	149483											
SLC45A1	50651	broad.mit.edu	37	chr1	8384429	8384429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaccccgccgggagatgccCtcttccccagcgtggcccca	11	20	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8384429	A	A	8384429	3	1	188	1	0	0	0	0	1	0	0	0	14754	681	24	2	42	2	SLC45A1	1	8384429	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2078880	8384429	240866192	6	149484											
PIK3CD	5293	broad.mit.edu	37	chr1	9775847	9775847	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagctctgccgagtgggcCgtgtggccgggctggccctg	19	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9775847	T	T	9775847	1	4	188	0	1	0	0	0	0	0	0	0	12010	667	23	4		4	PIK3CD	1	9775847	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1391418	9775847	239474774	7	149485											
MIIP	60672	broad.mit.edu	37	chr1	12089915	12089915	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggacaccgcgagaccagcAgggccctgggaccctggcgc	15	16	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12089915	G	G	12089915	3	3	188	1	0	0	0	0	1	0	0	0	9678	188	7	5	831	5	MIIP	1	12089915	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	2314068	12089915	237160706	8	149486											
TNFRSF1B	7133	broad.mit.edu	37	chr1	12248921	12248921	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaatactatgaccagacAgctcagatgtgctgcagcaa	10	9	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12248921	T	T	12248921	2	4	188	1	0	0	0	0	0	0	0	1	16417	175	7	5		5	TNFRSF1B	1	12248921	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	159006	12248921	237001700	9	149487											
TMEM82	388595	broad.mit.edu	37	chr1	16070900	16070900	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgtgcctgggcctgctGgcccatgcacatggcctccc	15	15	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16070900	T	T	16070900	2	4	188	1	0	0	0	0	0	0	0	1	16329	1335	47	2		2	TMEM82	1	16070900	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	3821979	16070900	233179721	10	149488											
NBPF1	55672	broad.mit.edu	37	chr1	16891476	16891476	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctacacacataacaatccActgtctaaccctcacacagg	3	17	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16891476	G	G	16891476	1	3	188	0	1	0	0	0	0	0	0	0	10286	174	6	5		5	NBPF1	1	16891476	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	820576	16891476	232359145	11	149489											
PADI2	11240	broad.mit.edu	37	chr1	17418823	17418823	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttccccaggcacctgcaCctgtgaaggccacaactgct	9	16	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17418823	T	T	17418823	1	4	188	0	1	0	0	0	0	0	0	0	11472	522	18	4		4	PADI2	1	17418823	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	527347	17418823	231831798	12	149490											
PADI1	29943	broad.mit.edu	37	chr1	17548814	17548815	+	Missense_Mutation	DNP	GG	TT	TT													caagggtgccaacagcttcaGggtctctggaagctccgggg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	17548815	TT	TT	17548814	3	4	188	1	0	0	0	0	1	0	0	0	11471	1000	35	2	128	2	PADI1	1	17548814	Missense_Mutation	DNP	GG	TCGA-64-5775-01A-01D-1625-08	129991	17548814	231701807	13	149491											
TMCO4	255104	broad.mit.edu	37	chr1	20009803	20009804	+	Missense_Mutation	DNP	CT	AA	AA													gatgaggcggcagctgctgcCtggcgaggctcctcggaggg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20009804	AA	AA	20009803	3	1	188	1	0	0	0	0	1	0	0	0	16121	680	24	2	273	2	TMCO4	1	20009803	Missense_Mutation	DNP	CT	TCGA-64-5775-01A-01D-1625-08	2460989	20009803	229240818	14	149492											
OTUD3	23252	broad.mit.edu	37	chr1	20231577	20231577	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcacaggtggtaactgttCtgtcattcatttaggagttg	11	6	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20231577	A	A	20231577	1	1	188	0	1	0	0	0	0	0	0	0	11407	928	32	3		3	OTUD3	1	20231577	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	221774	20231577	229019044	15	149493											
LUZP1	7798	broad.mit.edu	37	chr1	23418280	23418280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagctctgccagccccacCtggatattgctagtggatgt	12	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23418280	A	A	23418280	3	1	188	1	0	0	0	0	1	0	0	0	9173	680	24	2	763	2	LUZP1	1	23418280	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3186703	23418280	225832341	16	149494											
PAFAH2	5051	broad.mit.edu	37	chr1	26310565	26310565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcagaaataggtggttgCcgctgaccggtccctgaaat	12	10	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26310565	A	A	26310565	3	1	188	1	0	0	0	0	1	0	0	0	11481	739	26	3	778	3	PAFAH2	1	26310565	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2892285	26310565	222940056	17	149495											
FGR	2268	broad.mit.edu	37	chr1	27949654	27949654	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaacagggtcaccccaatCcctgcagagtcagggctact	10	13	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27949654	T	T	27949654	2	4	188	1	0	0	0	0	0	0	0	1	5931	869	30	4		4	FGR	1	27949654	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1639089	27949654	221300967	18	149496											
PHACTR4	65979	broad.mit.edu	37	chr1	28800750	28800750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttataaaaagaaaatgtgGgccgggcctagtggcccaca	11	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28800750	T	T	28800750	1	4	188	0	1	0	0	0	0	0	0	0	11907	1247	43	2		2	PHACTR4	1	28800750	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	851096	28800750	220449871	19	149497											
MATN1	4146	broad.mit.edu	37	chr1	31191569	31191569	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctggctccgcccccgCctgcccgcgcaccgcagaag	11	22	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31191569	G	G	31191569	1	3	188	0	1	0	0	0	0	0	0	0	9425	754	26	4		4	MATN1	1	31191569	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2390819	31191569	218059052	20	149498											
BAI2	576	broad.mit.edu	37	chr1	32222212	32222212	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgcaggtagagggagtactTggtggggtcagggttctcca	18	7	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32222212	A	A	32222212	4	1	188	1	0	0	0	0	0	1	0	0	1304	1821	63	5	4651	5	BAI2	1	32222212	Nonsense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1030643	32222212	217028409	21	149499											
CSMD2	114784	broad.mit.edu	37	chr1	34038154	34038154	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctccataggcctgtgtccaGacactctgcagtggcctcag	11	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34038154	T	T	34038154	3	4	188	1	0	0	0	0	1	0	0	0	3979	933	33	3	2819	3	CSMD2	1	34038154	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1815942	34038154	215212467	22	149500											
GJA4	2701	broad.mit.edu	37	chr1	35260672	35260672	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctacaatgggctctcatcCagtgagcagaactgggccaa	10	12	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35260672	A	A	35260672	2	1	188	1	0	0	0	0	0	0	0	1	6467	581	21	2		2	GJA4	1	35260672	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1222518	35260672	213989949	23	149501											
DLGAP3	58512	broad.mit.edu	37	chr1	35334650	35334650	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctccaggtctgcctgcaCgccagccgtcacactattgg	10	16	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35334650	T	T	35334650	3	4	188	1	0	0	0	0	1	0	0	0	4601	536	19	4	914	4	DLGAP3	1	35334650	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	73978	35334650	213915971	24	149502											
GPBP1L1	60313	broad.mit.edu	37	chr1	46120390	46120390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctcatgccatcatgacctCgggaagagctatgccaacca	10	13	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46120390	A	A	46120390	3	1	188	1	0	0	0	0	1	0	0	0	6661	884	31	3	1154	3	GPBP1L1	1	46120390	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	10785740	46120390	203130231	25	149503											
TAL1	6886	broad.mit.edu	37	chr1	47685773	47685773	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcggagctcggcaaaggcCccgttcacattctgctgccg	12	14	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47685773	A	A	47685773	2	1	188	1	0	0	0	0	0	0	0	1	15660	610	22	2		2	TAL1	1	47685773	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1565383	47685773	201564848	26	149504											
NRD1	4898	broad.mit.edu	37	chr1	52277630	52277630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctcaccctcctcttccCctaaaagtaagttttagacg	4	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52277630	A	A	52277630	1	1	188	0	1	0	0	0	0	0	0	0	10740	638	22	2		2	NRD1	1	52277630	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4591857	52277630	196972991	27	149505											
DMRTB1	63948	broad.mit.edu	37	chr1	53930518	53930518	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatactgacaaggagaacaCtggtgagtgagctccagtct	12	8	1	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53930518	A	A	53930518	3	1	188	1	0	0	0	0	1	0	0	0	4630	565	20	3	969	3	DMRTB1	1	53930518	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1652888	53930518	195320103	28	149506											
C1orf87	127795	broad.mit.edu	37	chr1	60538214	60538214	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatatggacttacatcttTggcttctccacgaggtattg	8	9	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60538214	A	A	60538214	2	1	188	1	0	0	0	0	0	0	0	1	2086	1799	63	5		5	C1orf87	1	60538214	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	6607696	60538214	188712407	29	149507											
INADL	10207	broad.mit.edu	37	chr1	62263129	62263129	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgccacccctctatccctCaagtagtttacatttggaag	6	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62263129	A	A	62263129	1	1	188	0	1	0	0	0	0	0	0	0	7801	841	29	3		3	INADL	1	62263129	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1724915	62263129	186987492	30	149508											
KANK4	163782	broad.mit.edu	37	chr1	62739527	62739527	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagagtccatggacagggtCagtgttcaccatcacgtccg	11	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62739527	A	A	62739527	3	1	188	1	0	0	0	0	1	0	0	0	8049	826	29	3	1770	3	KANK4	1	62739527	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	476398	62739527	186511094	31	149509											
LEPR	3953	broad.mit.edu	37	chr1	66102113	66102113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaggctgagggtactgaGgtaacctatgaggacgaaag	15	6	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66102113	T	T	66102113	3	4	188	1	0	0	0	0	1	0	0	0	8800	991	35	2	3213	2	LEPR	1	66102113	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	3362586	66102113	183148508	32	149510											
LEPR	3953	broad.mit.edu	37	chr1	66102442	66102442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtctatctattatttagGggtcacctcaatcaaaaaga	6	7	5	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66102442	T	T	66102442	3	4	188	1	0	0	0	0	1	0	0	0	8800	1232	43	2	3542	2	LEPR	1	66102442	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	329	66102442	183148179	33	149511											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67242971	67242971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggacttgatgattccacGgtataaactaattgtgattg	9	6	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67242971	T	T	67242971	3	4	188	1	0	0	0	0	1	0	0	0	15841	1116	39	1	388	1	TCTEX1D1	1	67242971	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1140529	67242971	182007650	34	149512											
C1orf141	400757	broad.mit.edu	37	chr1	67591382	67591382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtgagtccttgtttcaCaaacaaacaaacaaattctg	6	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67591382	A	A	67591382	1	1	188	0	1	0	0	0	0	0	0	0	2021	493	17	3		3	C1orf141	1	67591382	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	348411	67591382	181659239	35	149513											
FPGT	8790	broad.mit.edu	37	chr1	74670277	74670277	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaatttgagtttattagGtttgacaaacctggctttac	10	5	0	3	rs139749795	byFrequency;by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74670277	A	A	74670277	2	1	188	1	0	0	0	0	0	0	0	1	6097	1252	44	4		4	FPGT	1	74670277	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	7078895	74670277	174580344	36	149514											
C1orf173	127254	broad.mit.edu	37	chr1	75055605	75055605	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaggtgagactttcttGgcttatcattttcactcagt	9	7	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75055605	A	A	75055605	3	1	188	1	0	0	0	0	1	0	0	0	2034	1348	47	4	2718	4	C1orf173	1	75055605	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	385328	75055605	174195016	37	149515											
C1orf173	127254	broad.mit.edu	37	chr1	75055645	75055645	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgagaagatgaccttcTggcactttcatctgtgctgc	9	11	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75055645	A	A	75055645	4	1	188	1	0	0	0	0	0	1	0	0	2034	1588	55	5	2758	5	C1orf173	1	75055645	Nonsense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	40	75055645	174194976	38	149516											
C1orf173	127254	broad.mit.edu	37	chr1	75065281	75065282	+	Intron	INS	-	A	A													agaaaacatacattcaagagINSaaaaaaaagaggattatctc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75065282	A	A	75065281	6	5	188	0	1	1	1	0	0	0	0	0	2034	957	33	0		0	C1orf173	1	75065281	Intron	INS	-	TCGA-64-5775-01A-01D-1625-08	9636	75065281	174185340	39	149517											
AK5	26289	broad.mit.edu	37	chr1	77806104	77806104	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattcctggcttgtgctaatCagagactcaaagaaagatta	8	7	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77806104	A	A	77806104	3	1	188	1	0	0	0	0	1	0	0	0	443	827	29	3	764	3	AK5	1	77806104	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2740823	77806104	171444517	40	149518											
SSX2IP	117178	broad.mit.edu	37	chr1	85130304	85130304	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagaaaaatcctaaaaTtcatctccccatataggttt	5	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85130304	G	G	85130304	1	3	188	0	1	0	0	0	0	0	0	0	15322	1508	52	5		5	SSX2IP	1	85130304	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	7324200	85130304	164120317	41	149519											
CLCA4	22802	broad.mit.edu	37	chr1	87029474	87029474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggctatttaaattttctAaactgacttcaggcttttat	5	7	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87029474	G	G	87029474	1	3	188	0	1	0	0	0	0	0	0	0	3490	377	13	5		5	CLCA4	1	87029474	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1899170	87029474	162221147	42	149520											
HFM1	164045	broad.mit.edu	37	chr1	91841140	91841141	+	Frame_Shift_Del	DEL	TG	-	-													aacactggcaattttgtagtTgagggttaaatcaaacttaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	91841141	-	-	91841140	7	5	188	1	0	1	0	1	0	0	0	0	7150	1812	63	0	2879	0	HFM1	1	91841140	Frame_Shift_Del	DEL	TG	TCGA-64-5775-01A-01D-1625-08	4811666	91841140	157409481	43	149521											
COL11A1	1301	broad.mit.edu	37	chr1	103440391	103440391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgacacttacaggagGgccttttggtccagggaatc	12	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103440391	T	T	103440391	3	4	188	1	0	0	0	0	1	0	0	0	3699	1232	43	2	2745	2	COL11A1	1	103440391	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	11599251	103440391	145810230	44	149522											
COL11A1	1301	broad.mit.edu	37	chr1	103491353	103491353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgattgctttttcttcgcTacctttacccctagtttggc	6	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103491353	A	A	103491353	1	1	188	0	1	0	0	0	0	0	0	0	3699	1537	53	5		5	COL11A1	1	103491353	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	50962	103491353	145759268	45	149523											
COL11A1	1301	broad.mit.edu	37	chr1	103491782	103491782	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttttacctccgtctgtGctattgtctcctcagttaca	6	11	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103491782	C	C	103491782	3	2	188	1	0	0	0	0	1	0	0	0	3699	1319	46	4	4938	4	COL11A1	1	103491782	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	429	103491782	145758839	46	149524											
COL11A1	1301	broad.mit.edu	37	chr1	103548452	103548452	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaattctttctgtttgtGcaaaatcccgttgtttttga	7	6	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103548452	T	T	103548452	4	4	188	1	0	0	0	0	0	1	0	0	3699	1311	46	3	5658	3	COL11A1	1	103548452	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	56670	103548452	145702169	47	149525											
PRMT6	55170	broad.mit.edu	37	chr1	107600389	107600389	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctcccgggacaacccccGtcgcctgcgcgtgctgctgc	12	20	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107600389	C	C	107600389	3	2	188	1	0	0	0	0	1	0	0	0	12646	1145	40	4	1054	4	PRMT6	1	107600389	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4051937	107600389	141650232	48	149526											
CELSR2	1952	broad.mit.edu	37	chr1	109813107	109813107	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctctgcaccttttcctgGgctctgctggaggccttgca	10	14	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109813107	T	T	109813107	3	4	188	1	0	0	0	0	1	0	0	0	3252	1241	43	2	7462	2	CELSR2	1	109813107	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2212718	109813107	139437514	49	149527											
SLC6A17	388662	broad.mit.edu	37	chr1	110717483	110717484	+	Nonsense_Mutation	DNP	GG	CT	CT													gacatctctgactccatctcGgagagtgggggcctcaactg					rs142547110	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	110717484	CT	CT	110717483	4	2	188	1	0	0	0	0	0	1	0	0	14794	1103	39	4	668	4	SLC6A17	1	110717483	Nonsense_Mutation	DNP	GG	TCGA-64-5775-01A-01D-1625-08	904376	110717483	138533138	50	149528											
C1orf103	55791	broad.mit.edu	37	chr1	111495357	111495357	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtataagatttccagaagacTtaggaattggaagtaattgc	10	4	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111495357	A	A	111495357	3	1	188	1	0	0	0	0	1	0	0	0	1997	1609	56	5	2172	5	C1orf103	1	111495357	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	777874	111495357	137755264	51	149529											
OVGP1	5016	broad.mit.edu	37	chr1	111966362	111966362	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggggtaaggcaaagaacTctatccacagaatcacaacc	8	12	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111966362	C	C	111966362	1	2	188	0	1	0	0	0	0	0	0	0	11419	1566	54	5		5	OVGP1	1	111966362	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	471005	111966362	137284259	52	149530											
ATP5F1	515	broad.mit.edu	37	chr1	111997056	111997056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggtgggttttcttctttGgtttttgttgttgttgttgt	12	2	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111997056	T	T	111997056	1	4	188	0	1	0	0	0	0	0	0	0	1156	1363	47	2		2	ATP5F1	1	111997056	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	30694	111997056	137253565	53	149531											
SYCP1	6847	broad.mit.edu	37	chr1	115417046	115417046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattttaaatattttaatGttttctggaggcattttgag	8	2	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115417046	T	T	115417046	1	4	188	0	1	0	0	0	0	0	0	0	15550	1392	48	3		3	SYCP1	1	115417046	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3419990	115417046	133833575	54	149532											
C1orf161	126868	broad.mit.edu	37	chr1	116670876	116670876	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagatgggggctgccgtagGaagtgttttcaggtcatgag	17	5	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116670876	A	A	116670876	2	1	188	1	0	0	0	0	0	0	0	1	2029	1165	41	4		4	C1orf161	1	116670876	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1253830	116670876	132579745	55	149533											
WDR3	10885	broad.mit.edu	37	chr1	118477140	118477140	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagaagttacttgcttatgCccctccccagatgggctaca	8	13	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118477140	T	T	118477140	2	4	188	1	0	0	0	0	0	0	0	1	17412	747	26	4		4	WDR3	1	118477140	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1806264	118477140	130773481	56	149534											
HSD3B2	3284	broad.mit.edu	37	chr1	119962122	119962122	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagagcctgccaggacgTctcggtcgtcatccacaccg	11	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119962122	A	A	119962122	3	1	188	1	0	0	0	0	1	0	0	0	7458	1667	58	5	230	5	HSD3B2	1	119962122	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1484982	119962122	129288499	57	149535											
NOTCH2	4853	broad.mit.edu	37	chr1	120459358	120459358	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaacacatgttaataacacTcttgagaatatagcagtttt	6	6	1	2	rs139151783	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120459358	C	C	120459358	1	2	188	0	1	0	0	0	0	0	0	0	10643	1566	54	5		5	NOTCH2	1	120459358	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	497236	120459358	128791263	58	149536											
PDE4DIP	9659	broad.mit.edu	37	chr1	145075801	145075801	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgagcccggcgggacgcgCgacagcagcagccaaagtcg	16	13	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145075801	G	G	145075801	3	3	188	1	0	0	0	0	1	0	0	0	11737	768	27	4	8750	4	PDE4DIP	1	145075801	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	24616443	145075801	104174820	59	149537											
NBPF10	100132406	broad.mit.edu	37	chr1	145682200	145682200	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcataggccgggtgcggtgGctcatgcctctaatcccagc	13	13	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145682200	T	T	145682200	1	4	188	0	1	0	0	0	0	0	0	0	10287	1218	42	3		3	NBPF10	1	145682200	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	606399	145682200	103568421	60	149538											
CHD1L	9557	broad.mit.edu	37	chr1	146724412	146724412	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttactatgcgacgagtActgctcaccgccactgcgat	10	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146724412	G	G	146724412	1	3	188	0	1	0	0	0	0	0	0	0	3355	406	14	5		5	CHD1L	1	146724412	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1042212	146724412	102526209	61	149539											
C1orf56	54964	broad.mit.edu	37	chr1	151022894	151022897	+	Intron	DEL	TATT	-	-													ttgtaatttccctttttctcTatttttttttcttacgcaga							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151022897	-	-	151022894	6	5	188	0	1	1	0	1	0	0	0	0	2070	1537	53	0		0	C1orf56	1	151022894	Intron	DEL	TATT	TCGA-64-5775-01A-01D-1625-08	4298482	151022894	98227727	62	149540											
CELF3	11189	broad.mit.edu	37	chr1	151680397	151680397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaaacttcaccaccagGctggacgaggcaccctgggc	11	15	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151680397	T	T	151680397	3	4	188	1	0	0	0	0	1	0	0	0	3247	1194	42	3	924	3	CELF3	1	151680397	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	657503	151680397	97570224	63	149541											
FLG	2312	broad.mit.edu	37	chr1	152279988	152279988	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtccatgaatggtgtcctgAccctcttgggacgttgagtg	13	9	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279988	T	T	152279988	2	4	188	1	0	0	0	0	0	0	0	1	5979	262	10	5		5	FLG	1	152279988	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	599591	152279988	96970633	64	149542											
LELP1	149018	broad.mit.edu	37	chr1	153177371	153177371	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagtgcctgccctgcccctCgcagtctccttcatcctgcc	7	20	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153177371	A	A	153177371	4	1	188	1	0	0	0	0	0	1	0	0	8790	893	31	3	190	3	LELP1	1	153177371	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	897383	153177371	96073250	65	149543											
SHE	126669	broad.mit.edu	37	chr1	154473806	154473806	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggagggagaaaggaccttagGaaacctatcctcactgcctc	11	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154473806	C	C	154473806	1	2	188	0	1	0	0	0	0	0	0	0	14389	1189	41	4		4	SHE	1	154473806	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1296435	154473806	94776815	66	149544											
IQGAP3	128239	broad.mit.edu	37	chr1	156532439	156532439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggtagtggtcatagatgtCctggctttctctgtcatcct	10	9	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156532439	A	A	156532439	3	1	188	1	0	0	0	0	1	0	0	0	7886	855	30	3	4198	3	IQGAP3	1	156532439	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2058633	156532439	92718182	67	149545											
PEAR1	375033	broad.mit.edu	37	chr1	156883536	156883536	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctacagcaatggcccaggCccattctacaataaaggtat	8	11	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156883536	A	A	156883536	2	1	188	1	0	0	0	0	0	0	0	1	11806	726	26	3		3	PEAR1	1	156883536	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	351097	156883536	92367085	68	149546											
FCRL5	83416	broad.mit.edu	37	chr1	157488210	157488210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagaacagagacatccttGggtcttacctgcatgtttct	9	11	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157488210	T	T	157488210	1	4	188	0	1	0	0	0	0	0	0	0	5855	1363	47	2		2	FCRL5	1	157488210	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	604674	157488210	91762411	69	149547											
CD1D	912	broad.mit.edu	37	chr1	158152741	158152741	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggtgtgccatgtctcAggattctacccaaagcctgt	10	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158152741	T	T	158152741	2	4	188	1	0	0	0	0	0	0	0	1	3007	175	7	5		5	CD1D	1	158152741	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	664531	158152741	91097880	70	149548											
CD1B	910	broad.mit.edu	37	chr1	158301238	158301238	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagatgcaacttcttaCtggcagagctggtatttgat	12	7	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158301238	A	A	158301238	1	1	188	0	1	0	0	0	0	0	0	0	3005	580	20	3		3	CD1B	1	158301238	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	148497	158301238	90949383	71	149549											
CD1E	913	broad.mit.edu	37	chr1	158325743	158325743	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcggggtgagcaggagcAgcggggcactcagcgagggg	22	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158325743	T	T	158325743	3	4	188	1	0	0	0	0	1	0	0	0	3008	188	7	5	766	5	CD1E	1	158325743	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	24505	158325743	90924878	72	149550											
SPTA1	6708	broad.mit.edu	37	chr1	158615096	158615096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagggctagcatggtgcCcactgtcgataagttctgca	11	10	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158615096	A	A	158615096	3	1	188	1	0	0	0	0	1	0	0	0	15234	623	22	2	3279	2	SPTA1	1	158615096	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	289353	158615096	90635525	73	149551											
PYHIN1	149628	broad.mit.edu	37	chr1	158906990	158906990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggaagagggaacacccaCtccctgcaatgatccccacc	9	15	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158906990	A	A	158906990	1	1	188	0	1	0	0	0	0	0	0	0	12973	580	20	3		3	PYHIN1	1	158906990	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	291894	158906990	90343631	74	149552											
IFI16	3428	broad.mit.edu	37	chr1	158970061	158970061	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatcggtgatgttatcCaggctggttagcaagagtat	11	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158970061	A	A	158970061	1	1	188	0	1	0	0	0	0	0	0	0	7581	609	21	2		2	IFI16	1	158970061	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	63071	158970061	90280560	75	149553											
VANGL2	57216	broad.mit.edu	37	chr1	160385714	160385714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggtgggcaggcatgcaGggtgacatgcgtggcggagg	20	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160385714	T	T	160385714	1	4	188	0	1	0	0	0	0	0	0	0	17247	1015	35	2		2	VANGL2	1	160385714	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1415653	160385714	88864907	76	149554											
SLAMF1	6504	broad.mit.edu	37	chr1	160589729	160589729	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttactgtcctttgcatacCcactttccccaagggcacaa	5	15	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160589729	T	T	160589729	1	4	188	0	1	0	0	0	0	0	0	0	14480	638	22	4		4	SLAMF1	1	160589729	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	204015	160589729	88660892	77	149555											
RGS5	8490	broad.mit.edu	37	chr1	163122534	163122534	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaaaaacagtcagctggaGaaatttattaatttacttaa	6	4	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163122534	A	A	163122534	1	1	188	0	1	0	0	0	0	0	0	0	13417	957	33	4		4	RGS5	1	163122534	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2532805	163122534	86128087	78	149556											
MAEL	84944	broad.mit.edu	37	chr1	166962085	166962085	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttataaatcctggtaagtAgtcagagtagatgctagatc	9	5	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166962085	T	T	166962085	1	4	188	0	1	0	0	0	0	0	0	0	9242	435	15	5		5	MAEL	1	166962085	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	3839551	166962085	82288536	79	149557											
DPT	1805	broad.mit.edu	37	chr1	168683705	168683705	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattcttaacaatttattccAttttatgcaaataatagtct	3	6	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168683705	G	G	168683705	1	3	188	0	1	0	0	0	0	0	0	0	4779	232	8	5		5	DPT	1	168683705	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1721620	168683705	80566916	80	149558											
GORAB	92344	broad.mit.edu	37	chr1	170521423	170521423	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggttcgtttagagaggccAtttcagcctgcggaggagag	16	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170521423	G	G	170521423	2	3	188	1	0	0	0	0	0	0	0	1	6638	204	8	5		5	GORAB	1	170521423	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	1837718	170521423	78729198	81	149559											
C1orf105	92346	broad.mit.edu	37	chr1	172425554	172425555	+	Splice_Site	DNP	GG	TT	TT													tctgtctctctttcccctcaGgccaggaggaaccagtgtga							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	172425555	TT	TT	172425554	5	4	188	1	0	0	0	0	0	0	1	0	1999	1014	35	2	212	2	C1orf105	1	172425554	Splice_Site	DNP	GG	TCGA-64-5775-01A-01D-1625-08	1904131	172425554	76825067	82	149560											
FASLG	356	broad.mit.edu	37	chr1	172629329	172629329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaaagatgatcctcagCacagaactatgttaatggaa	7	9	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172629329	A	A	172629329	1	1	188	0	1	0	0	0	0	0	0	0	5739	725	25	3		3	FASLG	1	172629329	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	203775	172629329	76621292	83	149561											
SLC9A11	284525	broad.mit.edu	37	chr1	173476059	173476059	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctgtcttagtatcaattAcactgccatacacaatgata	4	11	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	173476059	C	C	173476059	3	2	188	1	0	0	0	0	1	0	0	0	14825	391	14	5	229	5	SLC9A11	1	173476059	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	846730	173476059	75774562	84	149562											
TDRD5	163589	broad.mit.edu	37	chr1	179561783	179561783	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgtatacaggaatgtctGcggaaggaaataaggtcact	13	6	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179561783	T	T	179561783	2	4	188	1	0	0	0	0	0	0	0	1	15855	1306	46	3		3	TDRD5	1	179561783	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	6085724	179561783	69688838	85	149563											
CACNA1E	777	broad.mit.edu	37	chr1	181765960	181765960	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgtcaatccaggtcacCcagtgagggcaggtcacaga	13	13	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181765960	A	A	181765960	3	1	188	1	0	0	0	0	1	0	0	0	2568	623	22	2	6418	2	CACNA1E	1	181765960	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2204177	181765960	67484661	86	149564											
ZNF648	127665	broad.mit.edu	37	chr1	182027050	182027050	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatcgtcactctctaaGttcatgctcagcatctgggt	7	12	7	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182027050	T	T	182027050	3	4	188	1	0	0	0	0	1	0	0	0	18190	1020	36	3	1614	3	ZNF648	1	182027050	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	261090	182027050	67223571	87	149565											
PTGS2	5743	broad.mit.edu	37	chr1	186645536	186645536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttactcaaaacataaCaaagatagcacactaatttt	3	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186645536	A	A	186645536	1	1	188	0	1	0	0	0	0	0	0	0	12862	493	17	3		3	PTGS2	1	186645536	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4618486	186645536	62605085	88	149566											
FAM5C	339479	broad.mit.edu	37	chr1	190130039	190130039	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgaaaaatgtcaaaattCaacactttaattatgaaaca	3	6	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190130039	G	G	190130039	1	3	188	0	1	0	0	0	0	0	0	0	5645	841	29	4		4	FAM5C	1	190130039	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3484503	190130039	59120582	89	149567											
CDC73	79577	broad.mit.edu	37	chr1	193218922	193218922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgttcagaaatgggatGtaacagtattagaactcagc	9	6	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193218922	T	T	193218922	3	4	188	1	0	0	0	0	1	0	0	0	3115	1377	48	3	1542	3	CDC73	1	193218922	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	3088883	193218922	56031699	90	149568											
CFHR4	10877	broad.mit.edu	37	chr1	196887425	196887425	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatattatgcaaaaacAggggataccattgaatttat	6	4	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196887425	T	T	196887425	2	4	188	1	0	0	0	0	0	0	0	1	3317	175	7	5		5	CFHR4	1	196887425	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	3668503	196887425	52363196	91	149569											
ASPM	259266	broad.mit.edu	37	chr1	197065223	197065223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctctccaacatctataCcaggcttgaatcttgcaggc	8	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197065223	A	A	197065223	3	1	188	1	0	0	0	0	1	0	0	0	1060	508	18	3	1581	3	ASPM	1	197065223	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	177798	197065223	52185398	92	149570											
ZBTB41	360023	broad.mit.edu	37	chr1	197128743	197128743	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggagtgtggtagtatgacGcactaggtcactcggagtgt	16	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197128743	A	A	197128743	3	1	188	1	0	0	0	0	1	0	0	0	17669	1087	38	4	257	4	ZBTB41	1	197128743	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	63520	197128743	52121878	93	149571											
CRB1	23418	broad.mit.edu	37	chr1	197390204	197390204	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtacttgtgagaacttgCctgggaattatacttgccat	11	7	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197390204	A	A	197390204	3	1	188	1	0	0	0	0	1	0	0	0	3880	739	26	3	1268	3	CRB1	1	197390204	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	261461	197390204	51860417	94	149572											
FAM58B	339521	broad.mit.edu	37	chr1	200183036	200183036	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgagcccctgggattggaCtcccgcctctgggagctccg	14	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200183036	T	T	200183036	2	4	188	1	0	0	0	0	0	0	0	1	5642	564	20	4		4	FAM58B	1	200183036	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	2792832	200183036	49067585	95	149573											
CACNA1S	779	broad.mit.edu	37	chr1	201046958	201046958	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtagaccagaccagccCgtggtgcctgccggggaccc	16	14	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201046958	A	A	201046958	1	1	188	0	1	0	0	0	0	0	0	0	2573	667	23	1		1	CACNA1S	1	201046958	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	863922	201046958	48203663	96	149574											
RNPEP	6051	broad.mit.edu	37	chr1	201973564	201973564	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cggctgcgatggggccaaatCgtccttaagaacgaccacca	11	13	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201973564	G	G	201973564	3	3	188	1	0	0	0	0	1	0	0	0	13620	874	31	4	1772	4	RNPEP	1	201973564	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	926606	201973564	47277057	97	149575											
CTSE	1510	broad.mit.edu	37	chr1	206331183	206331183	+	Nonstop_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactggccccagcagtccccTaaggaggggccttgtgtctg	14	13	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206331183	G	G	206331183	4	3	188	1	0	0	0	0	0	0	0	0	4067	1535	53	5	1223	5	CTSE	1	206331183	Nonstop_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	4357619	206331183	42919438	98	149576											
RASSF5	83593	broad.mit.edu	37	chr1	206757707	206757707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaccccctgtgacatgcCcccgctggcagagtgaagac	11	16	0	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206757707	A	A	206757707	1	1	188	0	1	0	0	0	0	0	0	0	13197	638	22	2		2	RASSF5	1	206757707	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	426524	206757707	42492914	99	149577											
LGTN	1939	broad.mit.edu	37	chr1	206772647	206772647	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagacctactcgttcattTagtccagaggaacttgccca	9	11	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206772647	C	C	206772647	1	2	188	0	1	0	0	0	0	0	0	0	8832	1769	61	5		5	LGTN	1	206772647	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	14940	206772647	42477974	100	149578											
FCAMR	83953	broad.mit.edu	37	chr1	207143335	207143335	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggagcccacctgctctggGaagggcactgaggagcatgt	15	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207143335	A	A	207143335	1	1	188	0	1	0	0	0	0	0	0	0	5829	1189	41	4		4	FCAMR	1	207143335	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	370688	207143335	42107286	101	149579											
C1orf116	79098	broad.mit.edu	37	chr1	207195647	207195647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagctgctcagtcccacgcCtgagcgctccagagtgttgg	13	13	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207195647	A	A	207195647	3	1	188	1	0	0	0	0	1	0	0	0	2009	681	24	2	347	2	C1orf116	1	207195647	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	52312	207195647	42054974	102	149580											
CR1	1378	broad.mit.edu	37	chr1	207741314	207741314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgacctcattggagagagCaccatccgctgcacaagtga	10	12	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207741314	A	A	207741314	3	1	188	1	0	0	0	0	1	0	0	0	3872	709	25	3	4196	3	CR1	1	207741314	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	545667	207741314	41509307	103	149581											
PLXNA2	5362	broad.mit.edu	37	chr1	208206713	208206713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcggacaccatcttgctgCcccggtcaccctccttctgg	8	18	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208206713	A	A	208206713	3	1	188	1	0	0	0	0	1	0	0	0	12215	739	26	3	698	3	PLXNA2	1	208206713	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	465399	208206713	41043908	104	149582											
PLXNA2	5362	broad.mit.edu	37	chr1	208390847	208390847	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagaggtcatccagccGcagcagcttgcagaccccct	11	14	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208390847	A	A	208390847	3	1	188	1	0	0	0	0	1	0	0	0	12215	1086	38	4	5387	4	PLXNA2	1	208390847	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	184134	208390847	40859774	105	149583											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209955544	209955544	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcagaagcaagcaactcagcGaaaaactcagaaggtttggg	11	8	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209955544	A	A	209955544	1	1	188	0	1	0	0	0	0	0	0	0	16566	1073	37	4		4	TRAF3IP3	1	209955544	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	1564697	209955544	39295077	106	149584											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220341143	220341143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcagcctgaagctgaccCgaaaaagccatgagatttac	8	11	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220341143	A	A	220341143	1	1	188	0	1	0	0	0	0	0	0	0	13044	667	23	1		1	RAB3GAP2	1	220341143	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	10385599	220341143	28909478	107	149585											
GUK1	2987	broad.mit.edu	37	chr1	228334711	228334711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatccaggtagtgcctgctGcctgcccgccatccacacca	10	17	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228334711	T	T	228334711	1	4	188	0	1	0	0	0	0	0	0	0	6965	1334	46	3		3	GUK1	1	228334711	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	7993568	228334711	20915910	108	149586											
SIPA1L2	57568	broad.mit.edu	37	chr1	232579372	232579372	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtagcccacttgtggtctcCagggtccgctcccgccgggt	13	16	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232579372	T	T	232579372	4	4	188	1	0	0	0	0	0	1	0	0	14443	595	21	4	1803	4	SIPA1L2	1	232579372	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	4244661	232579372	16671249	109	149587											
LYST	1130	broad.mit.edu	37	chr1	235902286	235902286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaaaaagagctgcaattTtaaagtcttctgatgtcata	6	6	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235902286	C	C	235902286	1	2	188	0	1	0	0	0	0	0	0	0	9216	1856	64	5		5	LYST	1	235902286	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	3322914	235902286	13348335	110	149588											
HEATR1	55127	broad.mit.edu	37	chr1	236735619	236735619	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttacagactatctaaaCaagagaagagtatgttgaaa	7	4	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236735619	A	A	236735619	1	1	188	0	1	0	0	0	0	0	0	0	7094	493	17	3		3	HEATR1	1	236735619	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	833333	236735619	12515002	111	149589											
ACTN2	88	broad.mit.edu	37	chr1	236889100	236889100	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcagggttctggctcctatGcacttgccgaggctgtagga	13	10	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236889100	C	C	236889100	1	2	188	0	1	0	0	0	0	0	0	0	205	1334	46	4		4	ACTN2	1	236889100	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	153481	236889100	12361521	112	149590											
RYR2	6262	broad.mit.edu	37	chr1	237538101	237538101	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggacaccacaggtaagCatcttgtgctgcgggaagcc	13	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237538101	T	T	237538101	1	4	188	0	1	0	0	0	0	0	0	0	13880	725	25	4		4	RYR2	1	237538101	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	649001	237538101	11712520	113	149591											
RYR2	6262	broad.mit.edu	37	chr1	237670064	237670064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaactggcagagaatatcCatgaactctgggttatgaat	9	6	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237670064	A	A	237670064	3	1	188	1	0	0	0	0	1	0	0	0	13880	594	21	2	2758	2	RYR2	1	237670064	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	131963	237670064	11580557	114	149592											
RYR2	6262	broad.mit.edu	37	chr1	237789102	237789102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagagtgactccaaaaagtCctgtaagcagtatgagagtg	12	6	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237789102	A	A	237789102	3	1	188	1	0	0	0	0	1	0	0	0	13880	855	30	3	6322	3	RYR2	1	237789102	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	119038	237789102	11461519	115	149593											
RYR2	6262	broad.mit.edu	37	chr1	237870278	237870278	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccaactaatgtggaagatGtttgtccaaacataccgtct	8	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237870278	A	A	237870278	3	1	188	1	0	0	0	0	1	0	0	0	13880	1377	48	4	9880	4	RYR2	1	237870278	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	81176	237870278	11380343	116	149594											
RYR2	6262	broad.mit.edu	37	chr1	237895335	237895335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacattttataaatttgaCttttttgcagaaacctgggg	9	5	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237895335	A	A	237895335	1	1	188	0	1	0	0	0	0	0	0	0	13880	580	20	3		3	RYR2	1	237895335	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	25057	237895335	11355286	117	149595											
RYR2	6262	broad.mit.edu	37	chr1	237896899	237896899	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttaattttaaaaaggTatacttgttagaaaaagaac	5	3	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237896899	A	A	237896899	1	1	188	0	1	0	0	0	0	0	0	0	13880	1653	57	5		5	RYR2	1	237896899	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	1564	237896899	11353722	118	149596											
RYR2	6262	broad.mit.edu	37	chr1	237948103	237948103	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccctccgaggatctgaCcgacttaaaggagctgacag	11	13	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237948103	A	A	237948103	3	1	188	1	0	0	0	0	1	0	0	0	13880	507	18	3	13449	3	RYR2	1	237948103	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	51204	237948103	11302518	119	149597											
RYR2	6262	broad.mit.edu	37	chr1	237965251	237965251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcacaaaagaaaatgcaCtctgattagataagactgtg	7	6	2	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237965251	A	A	237965251	1	1	188	0	1	0	0	0	0	0	0	0	13880	580	20	3		3	RYR2	1	237965251	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	17148	237965251	11285370	120	149598											
NLRP3	114548	broad.mit.edu	37	chr1	247586625	247586625	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttactggagtacctttcgaGaatctctatttgtaaaatga	7	6	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247586625	T	T	247586625	3	4	188	1	0	0	0	0	1	0	0	0	10573	942	33	3	383	3	NLRP3	1	247586625	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	9621374	247586625	1663996	121	149599											
NLRP3	114548	broad.mit.edu	37	chr1	247588117	247588117	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagccccggggagggagcCaggagcacggcctctgcgcc	17	15	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247588117	A	A	247588117	3	1	188	1	0	0	0	0	1	0	0	0	10573	595	21	2	1382	2	NLRP3	1	247588117	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1492	247588117	1662504	122	149600											
OR2L13	284521	broad.mit.edu	37	chr1	248185547	248185547	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattgggtgtgggattcagAgtttcttcttcatgactttt	10	6	5	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248185547	T	T	248185547	1	4	188	0	1	0	0	0	0	0	0	0	11100	319	11	5		5	OR2L13	1	248185547	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	597430	248185547	1065074	123	149601											
OR2G6	391211	broad.mit.edu	37	chr1	248684931	248684931	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttgaagctgaagagtcCtgaagctgcaggaaaaatgg	13	5	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248684931	A	A	248684931	1	1	188	0	1	0	0	0	0	0	0	0	11094	696	24	2		2	OR2G6	1	248684931	5'Flank	SNP	C	TCGA-64-5775-01A-01D-1625-08	499384	248684931	565690	124	149602											
SNTG2	54221	broad.mit.edu	37	chr2	1079148	1079148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgtgcgtcacctatcccCacccctggctcctgccctca	8	20	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1079148	A	A	1079148	1	1	188	0	1	0	0	0	0	0	0	0	14989	609	21	2		2	SNTG2	2	1079148	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08		1079148	242120225	125	149603											
TPO	7173	broad.mit.edu	37	chr2	1439921	1439921	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccccagttacatatgaatCccaaattcagatgctggagt	8	10	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1439921	A	A	1439921	1	1	188	0	1	0	0	0	0	0	0	0	16534	870	30	3		3	TPO	2	1439921	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	360773	1439921	241759452	126	149604											
TPO	7173	broad.mit.edu	37	chr2	1488656	1488656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggtccctgcagctggtcCccatgaactcttccttcttt	8	15	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1488656	A	A	1488656	1	1	188	0	1	0	0	0	0	0	0	0	16534	638	22	2		2	TPO	2	1488656	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	48735	1488656	241710717	127	149605											
PXDN	7837	broad.mit.edu	37	chr2	1667392	1667392	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctacctctgggctgcacagTcaggtgggccacgaccttct	11	15	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1667392	A	A	1667392	3	1	188	1	0	0	0	0	1	0	0	0	12955	1667	58	5	2935	5	PXDN	2	1667392	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	178736	1667392	241531981	128	149606											
TTC15	51112	broad.mit.edu	37	chr2	3392034	3392034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgttcttcggagacacgGccgccagccactccttggcc	11	17	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3392034	T	T	3392034	3	4	188	1	0	0	0	0	1	0	0	0	16808	1203	42	3	642	3	TTC15	2	3392034	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1724642	3392034	239807339	129	149607											
COLEC11	78989	broad.mit.edu	37	chr2	3690910	3690910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggtgatggttattgcgGcctcaaaggcccgtggggca	17	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3690910	T	T	3690910	1	4	188	0	1	0	0	0	0	0	0	0	3743	1218	42	3		3	COLEC11	2	3690910	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	298876	3690910	239508463	130	149608											
COLEC11	78989	broad.mit.edu	37	chr2	3690925	3690925	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcggcctcaaaggcccgtGgggcacgtttgttgagtaaa	14	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3690925	C	C	3690925	1	2	188	0	1	0	0	0	0	0	0	0	3743	1363	47	4		4	COLEC11	2	3690925	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	15	3690925	239508448	131	149609											
KLF11	8462	broad.mit.edu	37	chr2	10192638	10192638	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcctctgcctgaaagGtccattaggacatcactcat	8	13	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10192638	T	T	10192638	1	4	188	0	1	0	0	0	0	0	0	0	8410	1276	44	3		3	KLF11	2	10192638	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	6501713	10192638	233006735	132	149610											
APOB	338	broad.mit.edu	37	chr2	21229598	21229598	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaatcttgtggtgccctctAatttgtactgcagtgcatca	8	10	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21229598	G	G	21229598	3	3	188	1	0	0	0	0	1	0	0	0	787	372	13	5	3565	5	APOB	2	21229598	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	11036960	21229598	221969775	133	149611											
IFT172	26160	broad.mit.edu	37	chr2	27676797	27676797	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagtgtggctctctgtgGgctcttacaaactctccccc	10	14	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27676797	A	A	27676797	1	1	188	0	1	0	0	0	0	0	0	0	7627	1247	43	4		4	IFT172	2	27676797	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6447199	27676797	215522576	134	149612											
IFT172	26160	broad.mit.edu	37	chr2	27676840	27676840	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctcatggccctgcatccaGtgccccaccttataataatt	5	16	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27676840	C	C	27676840	1	2	188	0	1	0	0	0	0	0	0	0	7627	1044	36	4		4	IFT172	2	27676840	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	43	27676840	215522533	135	149613											
BRE	9577	broad.mit.edu	37	chr2	28521328	28521329	+	Missense_Mutation	DNP	GG	TT	TT													ttatccgtacagccccagatGggatggaaatgaaatggcca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	28521329	TT	TT	28521328	3	4	188	1	0	0	0	0	1	0	0	0	1518	1357	47	2	1096	2	BRE	2	28521328	Missense_Mutation	DNP	GG	TCGA-64-5775-01A-01D-1625-08	844488	28521328	214678045	136	149614											
PLB1	151056	broad.mit.edu	37	chr2	28821700	28821700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtaccctttaagaccatgGggctggcctctatgtgcaaa	10	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28821700	T	T	28821700	1	4	188	0	1	0	0	0	0	0	0	0	12119	1247	43	2		2	PLB1	2	28821700	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	300372	28821700	214377673	137	149615											
CLIP4	79745	broad.mit.edu	37	chr2	29344477	29344477	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagtctttcttagaacCatttttatggttttcataaa	4	7	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29344477	T	T	29344477	1	4	188	0	1	0	0	0	0	0	0	0	3567	609	21	4		4	CLIP4	2	29344477	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	522777	29344477	213854896	138	149616											
GALNT14	79623	broad.mit.edu	37	chr2	31135282	31135282	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggatacaaccacacttaCgggtgtgattagcacaggct	12	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31135282	A	A	31135282	1	1	188	0	1	0	0	0	0	0	0	0	6274	551	19	3		3	GALNT14	2	31135282	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1790805	31135282	212064091	139	149617											
GALNT14	79623	broad.mit.edu	37	chr2	31165243	31165243	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaaattcttcggccccttGagtctgaaacacccatttcc	5	15	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31165243	A	A	31165243	1	1	188	0	1	0	0	0	0	0	0	0	6274	1305	45	4		4	GALNT14	2	31165243	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	29961	31165243	212034130	140	149618											
XDH	7498	broad.mit.edu	37	chr2	31628754	31628754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccccttctccgtcactccCactccaaagtcaggatacac	4	20	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31628754	A	A	31628754	1	1	188	0	1	0	0	0	0	0	0	0	17553	609	21	2		2	XDH	2	31628754	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	463511	31628754	211570619	141	149619											
BIRC6	57448	broad.mit.edu	37	chr2	32836633	32836633	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcaggactatgtctcaccAtgcagcagctctcaaggtga	11	11	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32836633	G	G	32836633	3	3	188	1	0	0	0	0	1	0	0	0	1444	217	8	5	14668	5	BIRC6	2	32836633	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	1207879	32836633	210362740	142	149620											
PRKD3	23683	broad.mit.edu	37	chr2	37543236	37543236	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaatttcagtctttagcCtcagaggtcattagaactct	7	9	5	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37543236	T	T	37543236	1	4	188	0	1	0	0	0	0	0	0	0	12626	696	24	4		4	PRKD3	2	37543236	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4706603	37543236	205656137	143	149621											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44036927	44036927	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctatttcaattattgtatAtttatttcttcttttccaaa	1	7	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44036927	T	T	44036927	1	4	188	0	1	0	0	0	0	0	0	0	4887	464	16	5		5	DYNC2LI1	2	44036927	3'UTR	SNP	A	TCGA-64-5775-01A-01D-1625-08	6493691	44036927	199162446	144	149622											
PREPL	9581	broad.mit.edu	37	chr2	44553863	44553863	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactcacctccaaagtcacCgctctcaccagctctggatt	6	16	4	0	rs140525819		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44553863	A	A	44553863	2	1	188	1	0	0	0	0	0	0	0	1	12581	639	23	1		1	PREPL	2	44553863	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	516936	44553863	198645510	145	149623											
MCFD2	90411	broad.mit.edu	37	chr2	47136246	47136246	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctcagccctggcgcctGgggcacaaaaggcccagagc	13	16	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47136246	A	A	47136246	3	1	188	1	0	0	0	0	1	0	0	0	9474	1348	47	4	387	4	MCFD2	2	47136246	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2582383	47136246	196063127	146	149624											
KLRAQ1	129285	broad.mit.edu	37	chr2	48688331	48688331	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtagattagaggaatcCttatcaatcatcaatgaaaa	7	6	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48688331	G	G	48688331	2	3	188	1	0	0	0	0	0	0	0	1	8484	668	24	4		4	KLRAQ1	2	48688331	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1552085	48688331	194511042	147	149625											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48898788	48898788	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccagacctgtttgacaCggataatgttattgtctgtc	10	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48898788	T	T	48898788	3	4	188	1	0	0	0	0	1	0	0	0	15435	536	19	4	3444	4	STON1-GTF2A1L	2	48898788	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	210457	48898788	194300585	148	149626											
NRXN1	9378	broad.mit.edu	37	chr2	50170836	50170836	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtaagaaaaaaagttgActaacctaacccacctgagc	8	9	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50170836	T	T	50170836	1	4	188	0	1	0	0	0	0	0	0	0	10760	290	10	5		5	NRXN1	2	50170836	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1272048	50170836	193028537	149	149627											
XPO1	7514	broad.mit.edu	37	chr2	61718001	61718001	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcacaaacgtcttgaaactGattttggcccaggtgcagtg	10	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61718001	A	A	61718001	1	1	188	0	1	0	0	0	0	0	0	0	17572	1305	45	4		4	XPO1	2	61718001	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	11547165	61718001	181481372	150	149628											
ARHGAP25	9938	broad.mit.edu	37	chr2	68962337	68962337	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaactggaagcaaaatgtcCctaaaattgccaaggaactg	8	8	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68962337	T	T	68962337	2	4	188	1	0	0	0	0	0	0	0	1	876	610	22	4		4	ARHGAP25	2	68962337	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	7244336	68962337	174237036	151	149629											
GFPT1	2673	broad.mit.edu	37	chr2	69577211	69577211	+	Frame_Shift_Del	DEL	T	-	-													atcaactaaggaagctcaccTtgcatcagaagcaaagtaat							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69577211	-	-	69577211	7	5	188	1	0	1	0	1	0	0	0	0	6409	1623	56	0	1299	0	GFPT1	2	69577211	Frame_Shift_Del	DEL	T	TCGA-64-5775-01A-01D-1625-08	614874	69577211	173622162	152	149630											
CLEC4F	165530	broad.mit.edu	37	chr2	71046978	71046978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggggtagcctgaacgagcCtcggtatcttgggggctgca	16	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71046978	A	A	71046978	3	1	188	1	0	0	0	0	1	0	0	0	3548	681	24	2	1686	2	CLEC4F	2	71046978	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1469767	71046978	172152395	153	149631											
ALMS1	7840	broad.mit.edu	37	chr2	73827957	73827957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaaaatgctctttaccGgttatcctgaggacagaaag	10	7	1	3	rs61741524		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73827957	T	T	73827957	3	4	188	1	0	0	0	0	1	0	0	0	535	1116	39	1	11888	1	ALMS1	2	73827957	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2780979	73827957	169371416	154	149632											
DGUOK	1716	broad.mit.edu	37	chr2	74166144	74166145	+	Frame_Shift_Ins	INS	-	A	A													tatccaggctgctggcacccINSaaaaagtaagtttttagttg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74166145	A	A	74166144	7	5	188	1	0	1	1	0	0	0	0	0	4515	595	21	0	256	0	DGUOK	2	74166144	Frame_Shift_Ins	INS	-	TCGA-64-5775-01A-01D-1625-08	338187	74166144	169033229	155	149633											
WDR54	84058	broad.mit.edu	37	chr2	74652753	74652753	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctgtgtggtgctcgattTtgtgattcctcaggcaactc	11	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74652753	C	C	74652753	2	2	188	1	0	0	0	0	0	0	0	1	17433	1838	64	5		5	WDR54	2	74652753	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	486609	74652753	168546620	156	149634											
REG1A	5967	broad.mit.edu	37	chr2	79348687	79348687	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattgtctcttctttttcaGgccaagaggcccagacagag	9	10	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79348687	T	T	79348687	5	4	188	1	0	0	0	0	0	0	1	0	13318	1014	35	2	70	2	REG1A	2	79348687	Splice_Site	SNP	G	TCGA-64-5775-01A-01D-1625-08	4695934	79348687	163850686	157	149635											
REG3A	5068	broad.mit.edu	37	chr2	79385666	79385666	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaaggtaggtgggaggaGgactgtgtgaaagataaacg	18	3	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79385666	C	C	79385666	1	2	188	0	1	0	0	0	0	0	0	0	13320	1015	35	4		4	REG3A	2	79385666	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	36979	79385666	163813707	158	149636											
CAPG	822	broad.mit.edu	37	chr2	85628374	85628374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacggatgttcttcttccCcttcacctggtagagtttct	9	12	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85628374	T	T	85628374	3	4	188	1	0	0	0	0	1	0	0	0	2647	623	22	4	640	4	CAPG	2	85628374	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	6242708	85628374	157570999	159	149637											
RMND5A	64795	broad.mit.edu	37	chr2	87364732	87364732	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgatgagagctcggtttctGatgaatcctcacagtattta	10	7	2	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87364732	A	A	87364732	1	1	188	0	1	0	0	0	0	0	0	0	13508	1305	45	4		4	RMND5A	2	87364732	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1736358	87364732	155834641	160	149638											
GPR45	11250	broad.mit.edu	37	chr2	105858804	105858804	+	Frame_Shift_Del	DEL	G	-	-													gtgctgtccttctgcatcgcGgggccctcgctcacgggctg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105858804	-	-	105858804	7	5	188	1	0	1	0	1	0	0	0	0	6761	1103	39	0	491	0	GPR45	2	105858804	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	18494072	105858804	137340569	161	149639											
SULT1C3	442038	broad.mit.edu	37	chr2	108863848	108863848	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtagcaaaacataaaaataTtcaatattttcacgtgaaat	5	5	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108863848	C	C	108863848	1	2	188	0	1	0	0	0	0	0	0	0	15496	1508	52	5		5	SULT1C3	2	108863848	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	3005044	108863848	134335525	162	149640											
POLR1B	84172	broad.mit.edu	37	chr2	113300233	113300233	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacgctgtgcacgagggtctCggcctcgcggtgcaggtgag	17	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113300233	T	T	113300233	2	4	188	1	0	0	0	0	0	0	0	1	12305	871	31	4		4	POLR1B	2	113300233	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	4436385	113300233	129899140	163	149641											
MARCO	8685	broad.mit.edu	37	chr2	119726804	119726804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcatctacctgatcctgCtcaccgctggcgctgggctg	12	14	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119726804	A	A	119726804	3	1	188	1	0	0	0	0	1	0	0	0	9403	797	28	3	172	3	MARCO	2	119726804	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	6426571	119726804	123472569	164	149642											
POTEF	728378	broad.mit.edu	37	chr2	130832725	130832725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccagttggtgatgatgcCgtgttccatggggtacttca	12	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130832725	A	A	130832725	3	1	188	1	0	0	0	0	1	0	0	0	12361	652	23	1	911	1	POTEF	2	130832725	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	11105921	130832725	112366648	165	149643											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110031	132110031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcccacataggtaccaGgtgatgaggagtatggaatt	14	6	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132110031	T	T	132110031	1	4	188	0	1	0	0	0	0	0	0	0	12160	1015	35	2		2	PLEKHB2	2	132110031	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1277306	132110031	111089342	166	149644											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110713	132110713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtctgtgcagatttctGtgctcctacctgcagtaaat	10	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132110713	T	T	132110713	3	4	188	1	0	0	0	0	1	0	0	0	12160	1392	48	3		3	PLEKHB2	2	132110713	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	682	132110713	111088660	167	149645											
FAM128A	653784	broad.mit.edu	37	chr2	132241761	132241761	+	Frame_Shift_Del	DEL	C	-	-													gttccgccagggccaatactCccccgagggcagcgctgcct							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132241761	-	-	132241761	7	5	188	1	0	1	0	1	0	0	0	0	5480	855	30	0	130	0	FAM128A	2	132241761	Frame_Shift_Del	DEL	C	TCGA-64-5775-01A-01D-1625-08	131048	132241761	110957612	168	149646											
MCM6	4175	broad.mit.edu	37	chr2	136627682	136627682	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaaggaaactgaggctcagGgaggtaaaagtgatttgtat	13	4	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136627682	C	C	136627682	1	2	188	0	1	0	0	0	0	0	0	0	9484	1247	43	4		4	MCM6	2	136627682	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	4385921	136627682	106571691	169	149647											
THSD7B	80731	broad.mit.edu	37	chr2	137988681	137988681	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagtcttgtgaaattccCtgccgaatggactgtgtgct	12	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137988681	A	A	137988681	2	1	188	1	0	0	0	0	0	0	0	1	16003	668	24	2		2	THSD7B	2	137988681	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1360999	137988681	105210692	170	149648											
THSD7B	80731	broad.mit.edu	37	chr2	138376014	138376014	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccctgtggtcaaggcgtcagGacccgcctgctaagctgtgt	13	13	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138376014	C	C	138376014	3	2	188	1	0	0	0	0	1	0	0	0	16003	1165	41	4	3600	4	THSD7B	2	138376014	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	387333	138376014	104823359	171	149649											
LRP1B	53353	broad.mit.edu	37	chr2	140995809	140995809	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgttataagatggattgCcaatttctacatttattcct	5	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995809	A	A	140995809	3	1	188	1	0	0	0	0	1	0	0	0	9042	739	26	3	339	3	LRP1B	2	140995809	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2619795	140995809	102203564	172	149650											
LRP1B	53353	broad.mit.edu	37	chr2	141253099	141253100	+	Intron	DNP	TG	CT	CT													tcaggatccatatgtataacTgaggttggatcagtgggcaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	141253100	CT	CT	141253099	1	2	188	0	1	0	0	0	0	0	0	0	9042	1595	55	5		5	LRP1B	2	141253099	Intron	DNP	TG	TCGA-64-5775-01A-01D-1625-08	257290	141253099	101946274	173	149651											
LRP1B	53353	broad.mit.edu	37	chr2	141458109	141458109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaaatatccatgggcaCaagcacaagttctccgggaa	9	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141458109	A	A	141458109	3	1	188	1	0	0	0	0	1	0	0	0	9042	478	17	3	7494	3	LRP1B	2	141458109	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	205010	141458109	101741264	174	149652											
GTDC1	79712	broad.mit.edu	37	chr2	144966344	144966344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttcaatgatgaggataCtcattggcccattcaaacct	7	10	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144966344	A	A	144966344	3	1	188	1	0	0	0	0	1	0	0	0	6916	565	20	3	1407	3	GTDC1	2	144966344	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3508235	144966344	98233029	175	149653											
LYPD6B	130576	broad.mit.edu	37	chr2	150069541	150069541	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacagttcatcacttcaccAgccacggaagaagcacatcc	7	14	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150069541	T	T	150069541	3	4	188	1	0	0	0	0	1	0	0	0	9203	188	7	5	382	5	LYPD6B	2	150069541	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	5103197	150069541	93129832	176	149654											
GALNT13	114805	broad.mit.edu	37	chr2	155252566	155252566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaagagaaaatctgaagtGtaagcccttttcttggtacc	8	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155252566	T	T	155252566	3	4	188	1	0	0	0	0	1	0	0	0	6273	1377	48	3	1250	3	GALNT13	2	155252566	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	5183025	155252566	87946807	177	149655											
UPP2	151531	broad.mit.edu	37	chr2	158978086	158978086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaaatccccaacttccCaaccctcgttggacatacaa	4	15	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158978086	A	A	158978086	3	1	188	1	0	0	0	0	1	0	0	0	17139	594	21	2	817	2	UPP2	2	158978086	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3725520	158978086	84221287	178	149656											
LY75	4065	broad.mit.edu	37	chr2	160697335	160697335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtccgtgatgctcaccaGctgcatgttacttttcagac	10	11	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160697335	T	T	160697335	3	4	188	1	0	0	0	0	1	0	0	0	9187	962	34	3	1800	3	LY75	2	160697335	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1719249	160697335	82502038	179	149657											
LY75	4065	broad.mit.edu	37	chr2	160735741	160735741	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaagttgtaatactgcttGagaaaatttacatagggatt	9	3	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160735741	C	C	160735741	1	2	188	0	1	0	0	0	0	0	0	0	9187	1305	45	4		4	LY75	2	160735741	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	38406	160735741	82463632	180	149658											
TBR1	10716	broad.mit.edu	37	chr2	162274207	162274207	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcatgtttccttttttaaGttttaacatttctggtctcg	7	8	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162274207	C	C	162274207	3	2	188	1	0	0	0	0	1	0	0	0	15769	1029	36	4	719	4	TBR1	2	162274207	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1538466	162274207	80925166	181	149659											
TTN	7273	broad.mit.edu	37	chr2	179497479	179497480	+	Frame_Shift_Del	DEL	TT	-	-													gcctcatctttctcgaagacTttaacatcactgagaggtgt							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179497480	-	-	179497479	7	5	188	1	0	1	0	1	0	0	0	0	16861	1606	56	0	64951	0	TTN	2	179497479	Frame_Shift_Del	DEL	TT	TCGA-64-5775-01A-01D-1625-08	17223272	179497479	63701894	182	149660											
TTN	7273	broad.mit.edu	37	chr2	179595581	179595581	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctactaatttgtttttgtttTtttttttaaattttaaggga	5	2	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179595581	A	A	179595581	1	1	188	0	1	0	0	0	0	0	0	0	16861	1856	64	5		5	TTN	2	179595581	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	98102	179595581	63603792	183	149661											
TTN	7273	broad.mit.edu	37	chr2	179622670	179622670	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagcataccaatttttaaTgtcttaccttgcactgaaac	5	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179622670	C	C	179622670	1	2	188	0	1	0	0	0	0	0	0	0	16861	1479	51	5		5	TTN	2	179622670	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	27089	179622670	63576703	184	149662											
DNAJC10	54431	broad.mit.edu	37	chr2	183584886	183584886	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagctggaactattatcgTtatgattttggtaaggtgat	11	3	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183584886	C	C	183584886	2	2	188	1	0	0	0	0	0	0	0	1	4669	1712	60	5		5	DNAJC10	2	183584886	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	3962216	183584886	59614487	185	149663											
DNAH7	56171	broad.mit.edu	37	chr2	196673303	196673303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgcattctaacatgtgaCcagttgtttaaagcttattt	6	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196673303	A	A	196673303	1	1	188	0	1	0	0	0	0	0	0	0	4646	522	18	3		3	DNAH7	2	196673303	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	13088417	196673303	46526070	186	149664											
DNAH7	56171	broad.mit.edu	37	chr2	196892823	196892823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagataaggggcagttagaaCataaaacaatggatatagga	11	3	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196892823	A	A	196892823	1	1	188	0	1	0	0	0	0	0	0	0	4646	493	17	3		3	DNAH7	2	196892823	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	219520	196892823	46306550	187	149665											
PLCL1	5334	broad.mit.edu	37	chr2	198950857	198950857	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaagaaagttcgggaataTaccatgctcaggaatatcgg	13	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198950857	C	C	198950857	2	2	188	1	0	0	0	0	0	0	0	1	12134	1413	49	5		5	PLCL1	2	198950857	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	2058034	198950857	44248516	188	149666											
AOX1	316	broad.mit.edu	37	chr2	201473757	201473757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtgaaggacattttgGctgatgtagtccagaagctt	12	8	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201473757	T	T	201473757	3	4	188	1	0	0	0	0	1	0	0	0	731	1203	42	3	1000	3	AOX1	2	201473757	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2522900	201473757	41725616	189	149667											
ALS2CR11	151254	broad.mit.edu	37	chr2	202352544	202352544	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcatctgagctttttcctaAaagccttgatcttgatttta	5	8	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202352544	T	T	202352544	3	4	188	1	0	0	0	0	1	0	0	0	552	11	1	5	212	5	ALS2CR11	2	202352544	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	878787	202352544	40846829	190	149668											
NRP2	8828	broad.mit.edu	37	chr2	206605167	206605167	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atttgacagaactttcccatCcccttcaaagactgctcaag	5	13	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206605167	G	G	206605167	1	3	188	0	1	0	0	0	0	0	0	0	10756	870	30	4		4	NRP2	2	206605167	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4252623	206605167	36594206	191	149669											
NRP2	8828	broad.mit.edu	37	chr2	206630448	206630448	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaggtgtgggtgtagttgtGtcttaggctgggttcagggt	18	3	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206630448	C	C	206630448	1	2	188	0	1	0	0	0	0	0	0	0	10756	1392	48	4		4	NRP2	2	206630448	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	25281	206630448	36568925	192	149670											
PTH2R	5746	broad.mit.edu	37	chr2	209271755	209271755	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtccctgcttcttcctaCagccgttccgggcatggccg	12	15	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209271755	G	G	209271755	1	3	188	0	1	0	0	0	0	0	0	0	12866	493	17	4		4	PTH2R	2	209271755	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	2641307	209271755	33927618	193	149671											
CPS1	1373	broad.mit.edu	37	chr2	211465353	211465353	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacttcagttgagtccattAtggctacggaagacaggcag	12	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211465353	T	T	211465353	3	4	188	1	0	0	0	0	1	0	0	0	3855	449	16	5	1704	5	CPS1	2	211465353	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	2193598	211465353	31734020	194	149672											
ATIC	471	broad.mit.edu	37	chr2	216213880	216213880	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagttactcactgaggcaGagaagaaggaatgggttgag	15	5	1	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216213880	T	T	216213880	4	4	188	1	0	0	0	0	0	1	0	0	1109	943	33	3	1625	3	ATIC	2	216213880	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4748527	216213880	26985493	195	149673											
WNT10A	80326	broad.mit.edu	37	chr2	219754782	219754782	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccaatgcgtgtgccctGggcaaactgaaggcctgtgg	15	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219754782	T	T	219754782	2	4	188	1	0	0	0	0	0	0	0	1	17509	1335	47	2		2	WNT10A	2	219754782	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	3540902	219754782	23444591	196	149674											
CCDC108	255101	broad.mit.edu	37	chr2	219875446	219875446	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggggagttaggagggtgGgggtagggactggtcagagg	23	4	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219875446	A	A	219875446	1	1	188	0	1	0	0	0	0	0	0	0	2769	1247	43	4		4	CCDC108	2	219875446	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	120664	219875446	23323927	197	149675											
ANKZF1	55139	broad.mit.edu	37	chr2	220098104	220098104	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcccgaggtgggccatcAcactctgctggagccaacct	12	14	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220098104	T	T	220098104	2	4	188	1	0	0	0	0	0	0	0	1	693	146	6	5		5	ANKZF1	2	220098104	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	222658	220098104	23101269	198	149676											
SPEG	10290	broad.mit.edu	37	chr2	220326615	220326615	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctccaggtgggtctacaTcccctttcagcagccccatc	7	17	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220326615	C	C	220326615	3	2	188	1	0	0	0	0	1	0	0	0	15154	1435	50	5	2478	5	SPEG	2	220326615	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	228511	220326615	22872758	199	149677											
SPEG	10290	broad.mit.edu	37	chr2	220326812	220326812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggggcctagcctcctGtgtgcccccgttcctttggg	14	14	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220326812	T	T	220326812	1	4	188	0	1	0	0	0	0	0	0	0	15154	1392	48	3		3	SPEG	2	220326812	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	197	220326812	22872561	200	149678											
EPHA4	2043	broad.mit.edu	37	chr2	222298988	222298988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaattgcttctggcgcagtCcaccggataggaatcttgcc	11	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222298988	A	A	222298988	3	1	188	1	0	0	0	0	1	0	0	0	5211	856	30	3	606	3	EPHA4	2	222298988	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1972176	222298988	20900385	201	149679											
ACSL3	2181	broad.mit.edu	37	chr2	223785894	223785894	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgaattgagttaaattAactcaatttgattgagttat	7	2	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223785894	G	G	223785894	1	3	188	0	1	0	0	0	0	0	0	0	178	377	13	5		5	ACSL3	2	223785894	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1486906	223785894	19413479	202	149680											
KCNE4	23704	broad.mit.edu	37	chr2	223917913	223917913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccctctgttccatggaagGggacagcgtgagctccgagt	13	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223917913	T	T	223917913	3	4	188	1	0	0	0	0	1	0	0	0	8095	1232	43	2	367	2	KCNE4	2	223917913	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	132019	223917913	19281460	203	149681											
DOCK10	55619	broad.mit.edu	37	chr2	225761065	225761065	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatatttgtagtttaccacAtgccactgggaactataaaa	6	8	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225761065	G	G	225761065	2	3	188	1	0	0	0	0	0	0	0	1	4725	214	8	5		5	DOCK10	2	225761065	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	1843152	225761065	17438308	204	149682											
SP140	11262	broad.mit.edu	37	chr2	231090583	231090583	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagcagggccagcagggGcagatggcaagtggagacag	18	10	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231090583	T	T	231090583	2	4	188	1	0	0	0	0	0	0	0	1	15076	1190	42	3		3	SP140	2	231090583	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	5329518	231090583	12108790	205	149683											
COPS7B	64708	broad.mit.edu	37	chr2	232656416	232656416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtagacagtttggtctGtggtgaactttttttttcct	10	5	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232656416	T	T	232656416	1	4	188	0	1	0	0	0	0	0	0	0	3771	1392	48	3		3	COPS7B	2	232656416	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1565833	232656416	10542957	206	149684											
INPP5D	3635	broad.mit.edu	37	chr2	234072263	234072263	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtaatgacgtgacctcCctcacactcccgccctctgt	7	16	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234072263	T	T	234072263	1	4	188	0	1	0	0	0	0	0	0	0	7826	638	22	4		4	INPP5D	2	234072263	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1415847	234072263	9127110	207	149685											
AGAP1	116987	broad.mit.edu	37	chr2	236649676	236649677	+	Frame_Shift_Ins	INS	-	C	C													ctgatcagagatgaagggggINSccccccggaggcgcaggtga							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236649677	C	C	236649676	7	5	188	1	0	1	1	0	0	0	0	0	366	1203	42	0	394	0	AGAP1	2	236649676	Frame_Shift_Ins	INS	-	TCGA-64-5775-01A-01D-1625-08	2577413	236649676	6549697	208	149686											
COL6A3	1293	broad.mit.edu	37	chr2	238280799	238280799	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatccttgctggaatgggcGttcagcaggaactccacctt	10	12	2	0	rs113247852		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238280799	C	C	238280799	3	2	188	1	0	0	0	0	1	0	0	0	3733	1136	40	4	5863	4	COL6A3	2	238280799	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1631123	238280799	4918574	209	149687											
KIF1A	547	broad.mit.edu	37	chr2	241712631	241712631	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttgttggggtcctcattGatgacagcattgcagcggat	13	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241712631	T	T	241712631	2	4	188	1	0	0	0	0	0	0	0	1	8353	1280	45	3		3	KIF1A	2	241712631	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	3431832	241712631	1486742	210	149688											
D2HGDH	728294	broad.mit.edu	37	chr2	242707130	242707130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgtccctccaggagatGgtaacctgcacctcaatgtg	9	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242707130	T	T	242707130	3	4	188	1	0	0	0	0	1	0	0	0	4246	1348	47	2	1346	2	D2HGDH	2	242707130	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	994499	242707130	492243	211	149689											
OGG1	4968	broad.mit.edu	37	chr3	9807579	9807579	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccgagaaggcccccctatCgggagaggggattcacaagg	14	12	1	2	rs150915328		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9807579	T	T	9807579	2	4	188	1	0	0	0	0	0	0	0	1	10940	874	31	4		4	OGG1	3	9807579	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08		9807579	188214851	212	149690											
HDAC11	79885	broad.mit.edu	37	chr3	13523006	13523006	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatcttcagtttcagccctCggatggccttccacccatgc	7	17	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13523006	T	T	13523006	1	4	188	0	1	0	0	0	0	0	0	0	7073	899	31	4		4	HDAC11	3	13523006	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3715427	13523006	184499424	213	149691											
FBLN2	2199	broad.mit.edu	37	chr3	13669494	13669494	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgggggctgcagggctgggGatcatcagcctagggctcta	18	10	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13669494	T	T	13669494	1	4	188	0	1	0	0	0	0	0	0	0	5756	1189	41	3		3	FBLN2	3	13669494	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	146488	13669494	184352936	214	149692											
ARPP21	10777	broad.mit.edu	37	chr3	35763114	35763114	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggggcaacagagatggctCagggagaacatctgggagtc	16	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35763114	T	T	35763114	3	4	188	1	0	0	0	0	1	0	0	0	982	838	29	4	1072	4	ARPP21	3	35763114	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	22093620	35763114	162259316	215	149693											
LRRFIP2	9209	broad.mit.edu	37	chr3	37151106	37151106	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccaaaaaaagcaactggTagctctaaaggcagaacatt	7	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37151106	C	C	37151106	1	2	188	0	1	0	0	0	0	0	0	0	9115	1653	57	5		5	LRRFIP2	3	37151106	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	1387992	37151106	160871324	216	149694											
SCN5A	6331	broad.mit.edu	37	chr3	38592373	38592373	+	Frame_Shift_Del	DEL	G	-	-													ttgatgaggcttatctggttGggcttggcgatacggagtgg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38592373	-	-	38592373	7	5	188	1	0	1	0	1	0	0	0	0	14035	1335	47	0	564	0	SCN5A	3	38592373	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	1441267	38592373	159430057	217	149695											
SCN10A	6336	broad.mit.edu	37	chr3	38739735	38739735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatcccagccggccgacGtggtaatctggaagaggcac	14	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38739735	T	T	38739735	3	4	188	1	0	0	0	0	1	0	0	0	14025	1145	40	3	898	3	SCN10A	3	38739735	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	147362	38739735	159282695	218	149696											
ULK4	54986	broad.mit.edu	37	chr3	41504603	41504603	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagccagccgtacaataccgGaggtataggtcagcatgctg	12	10	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41504603	C	C	41504603	3	2	188	1	0	0	0	0	1	0	0	0	17104	1174	41	4	479	4	ULK4	3	41504603	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2764868	41504603	156517827	219	149697											
CCR2	729230	broad.mit.edu	37	chr3	46399269	46399269	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacatttacctgctcaaccTggccatctctgatctgcttt	6	13	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46399269	A	A	46399269	3	1	188	1	0	0	0	0	1	0	0	0	2971	1580	55	5	253	5	CCR2	3	46399269	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	4894666	46399269	151623161	220	149698											
ALS2CL	259173	broad.mit.edu	37	chr3	46719712	46719712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaacacagacacatccCcagataggcccagagccaga	9	13	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46719712	A	A	46719712	1	1	188	0	1	0	0	0	0	0	0	0	551	638	22	2		2	ALS2CL	3	46719712	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	320443	46719712	151302718	221	149699											
SETD2	29072	broad.mit.edu	37	chr3	47163563	47163563	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaactagtgctaccgatgcTctgcttatattcttcacatg	7	10	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47163563	A	A	47163563	3	1	188	1	0	0	0	0	1	0	0	0	14244	1551	54	5	5207	5	SETD2	3	47163563	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	443851	47163563	150858867	222	149700											
SCAP	22937	broad.mit.edu	37	chr3	47460980	47460980	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcaggtgactcgcctggcGacgtctggttctcaggtagc	14	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47460980	T	T	47460980	4	4	188	1	0	0	0	0	0	1	0	0	13989	1059	37	3	2105	3	SCAP	3	47460980	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	297417	47460980	150561450	223	149701											
SMARCC1	6599	broad.mit.edu	37	chr3	47703910	47703910	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tactcataactggatttcctGactgactgaaggggacaggc	11	9	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47703910	A	A	47703910	3	1	188	1	0	0	0	0	1	0	0	0	14889	1294	45	4	1281	4	SMARCC1	3	47703910	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	242930	47703910	150318520	224	149702											
CAMKV	79012	broad.mit.edu	37	chr3	49896879	49896879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccatagccggctcagGggtggcagctgccttggtgg	18	11	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49896879	T	T	49896879	3	4	188	1	0	0	0	0	1	0	0	0	2634	1232	43	2	131	2	CAMKV	3	49896879	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2192969	49896879	148125551	225	149703											
MAPKAPK3	7867	broad.mit.edu	37	chr3	50679165	50679165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtggtgagttgttcagcagGattcaggagcgtggcgacca	17	7	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50679165	T	T	50679165	3	4	188	1	0	0	0	0	1	0	0	0	9382	1165	41	3	397	3	MAPKAPK3	3	50679165	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	782286	50679165	147343265	226	149704											
SFMBT1	51460	broad.mit.edu	37	chr3	52977626	52977626	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaccttaacagggaaatgtTattaagcaccagacaagtat	7	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52977626	A	A	52977626	1	1	188	0	1	0	0	0	0	0	0	0	14270	1769	61	5		5	SFMBT1	3	52977626	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2298461	52977626	145044804	227	149705											
CACNA2D3	55799	broad.mit.edu	37	chr3	54596898	54596898	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtagataactttgaccgtGacccatctctcatatggcag	8	10	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54596898	T	T	54596898	3	4	188	1	0	0	0	0	1	0	0	0	2576	1290	45	3	638	3	CACNA2D3	3	54596898	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1619272	54596898	143425532	228	149706											
ARHGEF3	50650	broad.mit.edu	37	chr3	56779265	56779265	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgctgctgatctggattatCatttggtgtgtgcctcaaga	12	7	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56779265	T	T	56779265	3	4	188	1	0	0	0	0	1	0	0	0	906	826	29	4	758	4	ARHGEF3	3	56779265	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2182367	56779265	141243165	229	149707											
FLNB	2317	broad.mit.edu	37	chr3	58138445	58138445	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtcctcaggggtcagagtCatgaactgctctgcccagat	11	12	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58138445	A	A	58138445	1	1	188	0	1	0	0	0	0	0	0	0	5992	841	29	3		3	FLNB	3	58138445	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1359180	58138445	139883985	230	149708											
DNASE1L3	1776	broad.mit.edu	37	chr3	58186559	58186559	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtacccaggcagatttagCaaaagggatacttagggctg	14	7	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58186559	T	T	58186559	1	4	188	0	1	0	0	0	0	0	0	0	4703	725	25	4		4	DNASE1L3	3	58186559	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	48114	58186559	139835871	231	149709											
ATXN7	6314	broad.mit.edu	37	chr3	63938021	63938021	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttatatcagtcagaaccaGatgagtgagtgatgctctgt	10	6	3	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63938021	A	A	63938021	1	1	188	0	1	0	0	0	0	0	0	0	1219	957	33	4		4	ATXN7	3	63938021	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	5751462	63938021	134084409	232	149710											
MAGI1	9223	broad.mit.edu	37	chr3	65438897	65438897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacatgtgaacagtgccccCaattcacttaacccaagacc	6	15	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65438897	A	A	65438897	1	1	188	0	1	0	0	0	0	0	0	0	9282	609	21	2		2	MAGI1	3	65438897	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1500876	65438897	132583533	233	149711											
PDZRN3	23024	broad.mit.edu	37	chr3	73433556	73433556	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaagccgctgttgtgcaGcatccaggactcgcggtact	14	12	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73433556	T	T	73433556	3	4	188	1	0	0	0	0	1	0	0	0	11803	962	34	3	1043	3	PDZRN3	3	73433556	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	7994659	73433556	124588874	234	149712											
ROBO1	6091	broad.mit.edu	37	chr3	78766425	78766425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaaactctgatgtgtacCtggatttgggcagctctcca	10	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78766425	A	A	78766425	3	1	188	1	0	0	0	0	1	0	0	0	13624	695	24	2	4151	2	ROBO1	3	78766425	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	5332869	78766425	119256005	235	149713											
GPR128	84873	broad.mit.edu	37	chr3	100387999	100387999	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacacgcagtggtggagatAtcatcttgatatcttagtta	10	6	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100387999	C	C	100387999	1	2	188	0	1	0	0	0	0	0	0	0	6706	464	16	5		5	GPR128	3	100387999	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	21621574	100387999	97634431	236	149714											
ZBTB11	27107	broad.mit.edu	37	chr3	101370100	101370100	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtccttgctgttgtgcTaatacataattaaccacttg	6	9	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101370100	A	A	101370100	3	1	188	1	0	0	0	0	1	0	0	0	17650	1519	53	5	93	5	ZBTB11	3	101370100	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	982101	101370100	96652330	237	149715											
TMPRSS7	344805	broad.mit.edu	37	chr3	111769685	111769685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactgctctatttttaatagCatgaatttcattcatttttt	3	6	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111769685	T	T	111769685	1	4	188	0	1	0	0	0	0	0	0	0	16375	725	25	4		4	TMPRSS7	3	111769685	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	10399585	111769685	86252745	238	149716											
ATG3	64422	broad.mit.edu	37	chr3	112267530	112267530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaactagcacgtaatctGctaaccataaatccattaga	5	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112267530	T	T	112267530	1	4	188	0	1	0	0	0	0	0	0	0	1099	1334	46	3		3	ATG3	3	112267530	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	497845	112267530	85754900	239	149717											
CD200R1	131450	broad.mit.edu	37	chr3	112647858	112647858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggcttccctgcaactgCcttgcatactgcagttctat	8	13	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112647858	A	A	112647858	3	1	188	1	0	0	0	0	1	0	0	0	3011	739	26	3	488	3	CD200R1	3	112647858	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	380328	112647858	85374572	240	149718											
GPR156	165829	broad.mit.edu	37	chr3	119905417	119905417	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccctcctcttggagtccttTatcttcttgttgcaaggatg	8	11	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119905417	A	A	119905417	1	1	188	0	1	0	0	0	0	0	0	0	6726	1769	61	5		5	GPR156	3	119905417	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	7257559	119905417	78117013	241	149719											
MYLK	4638	broad.mit.edu	37	chr3	123456294	123456294	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaggcacgtgtacactcCcacgtcatcttggttgactc	8	15	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123456294	A	A	123456294	4	1	188	1	0	0	0	0	0	1	0	0	10150	632	22	2	5167	2	MYLK	3	123456294	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3550877	123456294	74566136	242	149720											
KALRN	8997	broad.mit.edu	37	chr3	124412581	124412581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactttctttttactcaataCggtgaagtcccttgttctct	5	10	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124412581	A	A	124412581	1	1	188	0	1	0	0	0	0	0	0	0	8045	551	19	3		3	KALRN	3	124412581	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	956287	124412581	73609849	243	149721											
ALDH1L1	10840	broad.mit.edu	37	chr3	125833592	125833592	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacctgggtaggcccaaagCatgctttgctgcaagaagca	13	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125833592	A	A	125833592	1	1	188	0	1	0	0	0	0	0	0	0	494	725	25	3		3	ALDH1L1	3	125833592	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1421011	125833592	72188838	244	149722											
CPNE4	131034	broad.mit.edu	37	chr3	131253972	131253972	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaagtacaggagtagtAgaagtattaaatatgaaata	8	1	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131253972	G	G	131253972	1	3	188	0	1	0	0	0	0	0	0	0	3846	435	15	5		5	CPNE4	3	131253972	3'UTR	SNP	A	TCGA-64-5775-01A-01D-1625-08	5420380	131253972	66768458	245	149723											
RAB6B	51560	broad.mit.edu	37	chr3	133560114	133560114	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagccaccctcccttaggagCagagcctcactcacttgtga	9	15	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133560114	G	G	133560114	1	3	188	0	1	0	0	0	0	0	0	0	13060	725	25	4		4	RAB6B	3	133560114	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2306142	133560114	64462316	246	149724											
EPHB1	2047	broad.mit.edu	37	chr3	134884997	134884997	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttcccaggctgcgtggatCagatagggtgtgaccattca	13	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134884997	T	T	134884997	1	4	188	0	1	0	0	0	0	0	0	0	5216	841	29	4		4	EPHB1	3	134884997	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1324883	134884997	63137433	247	149725											
SOX14	8403	broad.mit.edu	37	chr3	137484280	137484280	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagccccccgtcgcctaCatcctcttcccaggcatgac	7	20	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137484280	A	A	137484280	4	1	188	1	0	0	0	0	0	1	0	0	15059	489	17	3	656	3	SOX14	3	137484280	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2599283	137484280	60538150	248	149726											
DZIP1L	199221	broad.mit.edu	37	chr3	137822452	137822452	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgaccacgctgctgcTggcccaggctggtctgcagc	13	16	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137822452	A	A	137822452	3	1	188	1	0	0	0	0	1	0	0	0	4904	1580	55	5	2010	5	DZIP1L	3	137822452	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	338172	137822452	60199978	249	149727											
C3orf72	401089	broad.mit.edu	37	chr3	138668510	138668510	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcgggcgggaaagctggcAgaatgattactttcaggtcc	14	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138668510	T	T	138668510	1	4	188	0	1	0	0	0	0	0	0	0	2266	203	7	5		5	C3orf72	3	138668510	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	846058	138668510	59353920	250	149728											
ZIC4	84107	broad.mit.edu	37	chr3	147108672	147108672	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtagctcggggctgaggatCgcggcgggggcagccgctat	20	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147108672	G	G	147108672	1	3	188	0	1	0	0	0	0	0	0	0	17807	899	31	4		4	ZIC4	3	147108672	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	8440162	147108672	50913758	251	149729											
ZIC4	84107	broad.mit.edu	37	chr3	147108946	147108946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtatggcttgtcgctaGtgtgcacgtgcgaatgcttc	13	9	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147108946	T	T	147108946	3	4	188	1	0	0	0	0	1	0	0	0	17807	1029	36	3	236	3	ZIC4	3	147108946	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	274	147108946	50913484	252	149730											
ZIC4	84107	broad.mit.edu	37	chr3	147114004	147114004	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgccaggaccgtggggcgcaGcgaggttcaccgtcaggttc	16	13	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147114004	C	C	147114004	3	2	188	1	0	0	0	0	1	0	0	0	17807	971	34	4	693	4	ZIC4	3	147114004	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	5058	147114004	50908426	253	149731											
HPS3	84343	broad.mit.edu	37	chr3	148868529	148868529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggagcacatgaatactcGtagatttgctctcagaccta	9	9	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148868529	T	T	148868529	1	4	188	0	1	0	0	0	0	0	0	0	7407	1160	40	3		3	HPS3	3	148868529	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1754525	148868529	49153901	254	149732											
SHOX2	6474	broad.mit.edu	37	chr3	157820574	157820574	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccagctcattgagttgttCcagggtgaaattggtccgac	11	10	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157820574	A	A	157820574	4	1	188	1	0	0	0	0	0	1	0	0	14402	864	30	3	563	3	SHOX2	3	157820574	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	8952045	157820574	40201856	255	149733											
SLITRK3	22865	broad.mit.edu	37	chr3	164907292	164907292	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcttggacataggaaatacGattgttccccagatgcaaga	9	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164907292	T	T	164907292	3	4	188	1	0	0	0	0	1	0	0	0	14858	1058	37	3	1610	3	SLITRK3	3	164907292	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	7086718	164907292	33115138	256	149734											
SERPINI2	5276	broad.mit.edu	37	chr3	167159885	167159885	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcatcttttattctgaggcTgtgcttttcattcacagtga	7	8	5	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167159885	A	A	167159885	1	1	188	0	1	0	0	0	0	0	0	0	14232	1595	55	5		5	SERPINI2	3	167159885	3'UTR	SNP	T	TCGA-64-5775-01A-01D-1625-08	2252593	167159885	30862545	257	149735											
SPATA16	83893	broad.mit.edu	37	chr3	172641954	172641954	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatatacttctagaattctcTaatatttgtacattggacaa	4	6	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172641954	C	C	172641954	1	2	188	0	1	0	0	0	0	0	0	0	15117	1537	53	5		5	SPATA16	3	172641954	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	5482069	172641954	25380476	258	149736											
DVL3	1857	broad.mit.edu	37	chr3	183888495	183888495	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accgccagcagacagtccttCcgcatggccatgggaaaccc	10	16	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183888495	T	T	183888495	2	4	188	1	0	0	0	0	0	0	0	1	4877	854	30	4		4	DVL3	3	183888495	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	11246541	183888495	14133935	259	149737											
AHSG	197	broad.mit.edu	37	chr3	186333533	186333533	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaaccacctgccatgtGctggaccccacccctgtggc	10	17	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186333533	T	T	186333533	2	4	188	1	0	0	0	0	0	0	0	1	420	1306	46	3		3	AHSG	3	186333533	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2445038	186333533	11688897	260	149738											
HRG	3273	broad.mit.edu	37	chr3	186395105	186395105	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttttggcacaaatggggcCcaaagacattctcataataa	7	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186395105	A	A	186395105	2	1	188	1	0	0	0	0	0	0	0	1	7421	610	22	2		2	HRG	3	186395105	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	61572	186395105	11627325	261	149739											
C3orf59	151963	broad.mit.edu	37	chr3	192516397	192516397	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcagccggttggctgccttGacatgctcaatggcggtgcg	15	11	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192516397	T	T	192516397	2	4	188	1	0	0	0	0	0	0	0	1	2259	1277	45	3		3	C3orf59	3	192516397	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	6121292	192516397	5506033	262	149740											
HRASLS	57110	broad.mit.edu	37	chr3	192988531	192988531	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgatattgaaggaatttGggaggaggaaaagaaacctg	13	2	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192988531	T	T	192988531	1	4	188	0	1	0	0	0	0	0	0	0	7416	1363	47	2		2	HRASLS	3	192988531	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	472134	192988531	5033899	263	149741											
C3orf21	152002	broad.mit.edu	37	chr3	194991426	194991426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcagcagtgagcgcagcGcgacgcgggccttggcctgc	18	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194991426	T	T	194991426	3	4	188	1	0	0	0	0	1	0	0	0	2236	1087	38	3	835	3	C3orf21	3	194991426	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2002895	194991426	3031004	264	149742											
ZNF595	152687	broad.mit.edu	37	chr4	64953	64953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctgggtgtgtttccctGcaggtcacttgatgggaagg	16	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64953	T	T	64953	1	4	188	0	1	0	0	0	0	0	0	0	18152	1334	46	3		3	ZNF595	4	64953	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08		64953	191089323	265	149743											
MFSD7	84179	broad.mit.edu	37	chr4	680325	680325	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtctgactcaccgccGcacggagcccgacggagtcc	15	15	2	1	rs139449222		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	680325	A	A	680325	3	1	188	1	0	0	0	0	1	0	0	0	9630	1087	38	4	1425	4	MFSD7	4	680325	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	615372	680325	190473951	266	149744											
WHSC2	7469	broad.mit.edu	37	chr4	1989724	1989724	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccgcttcaactgctgggcGgtctccgtggctggaaggaa	14	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1989724	A	A	1989724	2	1	188	1	0	0	0	0	0	0	0	1	17491	1103	39	4		4	WHSC2	4	1989724	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1309399	1989724	189164552	267	149745											
EVC2	132884	broad.mit.edu	37	chr4	5567107	5567107	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggcaagaagggagtcTtatagtttcaaaaatacgcc	10	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5567107	A	A	5567107	1	1	188	0	1	0	0	0	0	0	0	0	5328	1624	56	5		5	EVC2	4	5567107	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	3577383	5567107	185587169	268	149746											
AFAP1	60312	broad.mit.edu	37	chr4	7857150	7857150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctctgcaacagtcctgCcaatcacaaaggcagcatgg	10	13	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7857150	A	A	7857150	1	1	188	0	1	0	0	0	0	0	0	0	353	754	26	3		3	AFAP1	4	7857150	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2290043	7857150	183297126	269	149747											
HTRA3	94031	broad.mit.edu	37	chr4	8305882	8305882	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgggcaaaggctcagggGaggggccttgacggcagact	18	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8305882	T	T	8305882	1	4	188	0	1	0	0	0	0	0	0	0	7525	1189	41	3		3	HTRA3	4	8305882	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	448732	8305882	182848394	270	149748											
GPR78	27201	broad.mit.edu	37	chr4	8584422	8584422	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaacagctgggtgggcttgGcctcagttgagtaggcctct	16	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8584422	C	C	8584422	1	2	188	0	1	0	0	0	0	0	0	0	6775	1218	42	4		4	GPR78	4	8584422	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	278540	8584422	182569854	271	149749											
BOD1L	259282	broad.mit.edu	37	chr4	13601770	13601770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagagatgatgccactccCgtctttttcttccatgactg	8	12	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13601770	A	A	13601770	3	1	188	1	0	0	0	0	1	0	0	0	1489	652	23	1	2469	1	BOD1L	4	13601770	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	5017348	13601770	177552506	272	149750											
TBC1D19	55296	broad.mit.edu	37	chr4	26661218	26661219	+	Splice_Site	DNP	GG	TT	TT													ttgttggatttgtttttaaaGgtattaattaatcttcgcaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	26661219	TT	TT	26661218	5	4	188	1	0	0	0	0	0	0	1	0	15726	1014	35	2	510	2	TBC1D19	4	26661218	Splice_Site	DNP	GG	TCGA-64-5775-01A-01D-1625-08	13059448	26661218	164493058	273	149751											
PTTG2	10744	broad.mit.edu	37	chr4	37962455	37962455	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttttgacctgcctgaagagCgccagattgcacacctcccc	9	15	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37962455	G	G	37962455	3	3	188	1	0	0	0	0	1	0	0	0	12929	768	27	4	402	4	PTTG2	4	37962455	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	11301237	37962455	153191821	274	149752											
GABRB1	2560	broad.mit.edu	37	chr4	47405585	47405585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaactcaggagcgtatcCacgactgtcactaagttttc	7	12	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47405585	A	A	47405585	3	1	188	1	0	0	0	0	1	0	0	0	6226	594	21	2	718	2	GABRB1	4	47405585	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	9443130	47405585	143748691	275	149753											
LRRC66	339977	broad.mit.edu	37	chr4	52869343	52869343	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatgcttctaatgtaattgCccatgtgtcttccttattca	5	9	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52869343	T	T	52869343	1	4	188	0	1	0	0	0	0	0	0	0	9105	754	26	4		4	LRRC66	4	52869343	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5463758	52869343	138284933	276	149754											
USP46	64854	broad.mit.edu	37	chr4	53492173	53492173	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgagctacataagagctccCctagtacttacagtttcaca	7	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53492173	T	T	53492173	1	4	188	0	1	0	0	0	0	0	0	0	17204	638	22	4		4	USP46	4	53492173	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	622830	53492173	137662103	277	149755											
KDR	3791	broad.mit.edu	37	chr4	55976632	55976632	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgggattggtaaggatgAcagtgtaatttcctgtgtct	12	4	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55976632	G	G	55976632	3	3	188	1	0	0	0	0	1	0	0	0	8209	275	10	5	2965	5	KDR	4	55976632	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	2484459	55976632	135177644	278	149756											
TECRL	253017	broad.mit.edu	37	chr4	65147209	65147209	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacctcataggtgtagttagGacatgaaaccaggaaaaaca	9	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65147209	C	C	65147209	3	2	188	1	0	0	0	0	1	0	0	0	15868	1174	41	4	202	4	TECRL	4	65147209	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	9170577	65147209	126007067	279	149757											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68928493	68928493	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtatactggatttggccGccctctgcggatggatatct	11	10	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68928493	A	A	68928493	1	1	188	0	1	0	0	0	0	0	0	0	16366	1102	38	4		4	TMPRSS11F	4	68928493	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3781284	68928493	122225783	280	149758											
UGT2B10	7365	broad.mit.edu	37	chr4	69682288	69682288	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctcatttgaaaggcacagtgGaggatttattttccctcctt	8	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69682288	C	C	69682288	3	2	188	1	0	0	0	0	1	0	0	0	17082	1174	41	4	553	4	UGT2B10	4	69682288	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	753795	69682288	121471988	281	149759											
UGT2B4	7363	broad.mit.edu	37	chr4	70346228	70346228	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaattttgacttgacaaGgtaagttttgaaagatgttt	8	3	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70346228	T	T	70346228	1	4	188	0	1	0	0	0	0	0	0	0	17087	1015	35	2		2	UGT2B4	4	70346228	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	663940	70346228	120808048	282	149760											
CSN2	1447	broad.mit.edu	37	chr4	70823408	70823408	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaggcagcaccacagcagGctgagcaagaggcagaatgt	14	10	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823408	A	A	70823408	3	1	188	1	0	0	0	0	1	0	0	0	3982	1203	42	4	429	4	CSN2	4	70823408	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	477180	70823408	120330868	283	149761											
SMR3A	26952	broad.mit.edu	37	chr4	71232763	71232763	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acaaaagacaacactaccctCgtaactactgcttctactac	3	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71232763	G	G	71232763	1	3	188	0	1	0	0	0	0	0	0	0	14925	899	31	4		4	SMR3A	4	71232763	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	409355	71232763	119921513	284	149762											
GRSF1	2926	broad.mit.edu	37	chr4	71701992	71701992	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggggccaattcatactcagGgggtggtggaaggtcttcca	15	9	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71701992	A	A	71701992	3	1	188	1	0	0	0	0	1	0	0	0	6875	1232	43	4	1077	4	GRSF1	4	71701992	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	469229	71701992	119452284	285	149763											
ADAMTS3	9508	broad.mit.edu	37	chr4	73154387	73154387	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaacaaatataaattcTataacttctctcaaaaggaa	3	7	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73154387	C	C	73154387	1	2	188	0	1	0	0	0	0	0	0	0	267	1537	53	5		5	ADAMTS3	4	73154387	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	1452395	73154387	117999889	286	149764											
ART3	419	broad.mit.edu	37	chr4	77020177	77020177	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaaaataatcttggttGggcatggtggctcacgcctg	11	7	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77020177	A	A	77020177	1	1	188	0	1	0	0	0	0	0	0	0	1002	1363	47	4		4	ART3	4	77020177	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3865790	77020177	114134099	287	149765											
BMP2K	55589	broad.mit.edu	37	chr4	79800082	79800082	+	Intron	DEL	A	-	-													ggcttattttgcttcacagtAaaataacagctctattatta							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79800082	-	-	79800082	6	5	188	0	1	1	0	1	0	0	0	0	1466	369	13	0		0	BMP2K	4	79800082	Intron	DEL	A	TCGA-64-5775-01A-01D-1625-08	2779905	79800082	111354194	288	149766											
PTPN13	5783	broad.mit.edu	37	chr4	87671562	87671564	+	Intron	DEL	ATT	-	-													gctgcttatttattaacataAttattctcataaaagtactg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87671564	-	-	87671562	6	5	188	0	1	1	0	1	0	0	0	0	12888	116	4	0		0	PTPN13	4	87671562	Intron	DEL	ATT	TCGA-64-5775-01A-01D-1625-08	7871480	87671562	103482714	289	149767											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99300403	99300403	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaaaaatatttgaaaaatGatgaacaaagaattcgtaag	6	3	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99300403	A	A	99300403	1	1	188	0	1	0	0	0	0	0	0	0	13147	1305	45	4		4	RAP1GDS1	4	99300403	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	11628841	99300403	91853873	290	149768											
EIF4E	1977	broad.mit.edu	37	chr4	99808424	99808424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattagaaacagttaagcaaCaacactgtcaacttcttact	4	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99808424	A	A	99808424	1	1	188	0	1	0	0	0	0	0	0	0	5070	493	17	3		3	EIF4E	4	99808424	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	508021	99808424	91345852	291	149769											
ADH1C	126	broad.mit.edu	37	chr4	100268269	100268269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttgccactaaccacatgCtcatctgaacgacagattcc	7	13	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100268269	A	A	100268269	3	1	188	1	0	0	0	0	1	0	0	0	309	796	28	3	1002	3	ADH1C	4	100268269	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	459845	100268269	90886007	292	149770											
C4orf21	55345	broad.mit.edu	37	chr4	113541332	113541332	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatcgatcactttctaagtcAtctccaggtttcacctgaaa	5	11	5	1	rs143057821		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113541332	T	T	113541332	3	4	188	1	0	0	0	0	1	0	0	0	2277	214	8	5	6233	5	C4orf21	4	113541332	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	13273063	113541332	77612944	293	149771											
SYNPO2	171024	broad.mit.edu	37	chr4	119979067	119979067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactacaacccacacccaaGgggatggagacgccaaacat	8	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119979067	T	T	119979067	3	4	188	1	0	0	0	0	1	0	0	0	15576	1000	35	2	3894	2	SYNPO2	4	119979067	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	6437735	119979067	71175209	294	149772											
KIAA1109	84162	broad.mit.edu	37	chr4	123246320	123246320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgccattaatcagacttTtataaagtccaggaattttt	5	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123246320	C	C	123246320	1	2	188	0	1	0	0	0	0	0	0	0	8278	1856	64	5		5	KIAA1109	4	123246320	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	3267253	123246320	67907956	295	149773											
INTU	27152	broad.mit.edu	37	chr4	128627638	128627638	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttgtaatttttttccctAtagaaacattatatgctatg	4	6	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128627638	G	G	128627638	1	3	188	0	1	0	0	0	0	0	0	0	7856	464	16	5		5	INTU	4	128627638	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	5381318	128627638	62526638	296	149774											
PCDH18	54510	broad.mit.edu	37	chr4	138450017	138450017	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgattcccggaaacaagcctCcaaacactcacaatctttaa	4	13	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138450017	A	A	138450017	1	1	188	0	1	0	0	0	0	0	0	0	11607	870	30	3		3	PCDH18	4	138450017	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	9822379	138450017	52704259	297	149775											
FGG	2266	broad.mit.edu	37	chr4	155530683	155530683	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttagggctattgcaaggatTaaatgagctacggttcacaa	10	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155530683	G	G	155530683	1	3	188	0	1	0	0	0	0	0	0	0	5927	1769	61	5		5	FGG	4	155530683	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	17080666	155530683	35623593	298	149776											
SC4MOL	6307	broad.mit.edu	37	chr4	166254679	166254679	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agttccagattgcaacatggGgatcccttatagttcatgaa	9	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166254679	C	C	166254679	3	2	188	1	0	0	0	0	1	0	0	0	13977	1233	43	4	159	4	SC4MOL	4	166254679	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	10723996	166254679	24899597	299	149777											
C4orf27	54969	broad.mit.edu	37	chr4	170671526	170671526	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaaagagtttacccatccTagggaaggttaaaacggtaa	9	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170671526	C	C	170671526	1	2	188	0	1	0	0	0	0	0	0	0	2281	1537	53	5		5	C4orf27	4	170671526	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4416847	170671526	20482750	300	149778											
KLKB1	3818	broad.mit.edu	37	chr4	187179225	187179225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaatggaatgtggcgtttGgtgggcatcaccagctgggg	16	8	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187179225	T	T	187179225	3	4	188	1	0	0	0	0	1	0	0	0	8483	1339	47	2	1830	2	KLKB1	4	187179225	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	16507699	187179225	3975051	301	149779											
FAT1	2195	broad.mit.edu	37	chr4	187509957	187509957	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctttgataccctggcgggTaaggggcatggggttctcta	15	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187509957	G	G	187509957	3	3	188	1	0	0	0	0	1	0	0	0	5746	1638	57	5	214	5	FAT1	4	187509957	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	330732	187509957	3644319	302	149780											
CCDC127	133957	broad.mit.edu	37	chr5	205950	205950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaactgagcgacagcacgcCgattttctgagatcatggcg	11	11	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205950	A	A	205950	3	1	188	1	0	0	0	0	1	0	0	0	2789	652	23	1	541	1	CCDC127	5	205950	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08		205950	180709310	303	149781											
SLC6A19	340024	broad.mit.edu	37	chr5	1208962	1208962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcggcggggcagcctgGgtgtgtggagctccatccac	18	12	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1208962	T	T	1208962	3	4	188	1	0	0	0	0	1	0	0	0	14796	1232	43	2	310	2	SLC6A19	5	1208962	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1003012	1208962	179706298	304	149782											
ADCY2	108	broad.mit.edu	37	chr5	7690790	7690790	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagacatttgttcctccttcCccaccttgtccaggagcggc	9	15	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7690790	G	G	7690790	1	3	188	0	1	0	0	0	0	0	0	0	294	638	22	4		4	ADCY2	5	7690790	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	6481828	7690790	173224470	305	149783											
CTNND2	1501	broad.mit.edu	37	chr5	11732245	11732245	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaaaaatgggaatgtttcTacctgttctttgactgaggc	9	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11732245	C	C	11732245	1	2	188	0	1	0	0	0	0	0	0	0	4054	1537	53	5		5	CTNND2	5	11732245	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4041455	11732245	169183015	306	149784											
ANKH	56172	broad.mit.edu	37	chr5	14712990	14712990	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggctgtctcacctgcttcCggtagacatagcacgcagcg	12	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14712990	T	T	14712990	3	4	188	1	0	0	0	0	1	0	0	0	627	652	23	4	128	4	ANKH	5	14712990	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2980745	14712990	166202270	307	149785											
MARCH11	441061	broad.mit.edu	37	chr5	16177991	16177991	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggggttcaacaactcaccCtaaaaagaaaacagctcagt	7	11	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16177991	T	T	16177991	5	4	188	1	0	0	0	0	0	0	1	0	9392	695	24	4	683	4	MARCH11	5	16177991	Splice_Site	SNP	C	TCGA-64-5775-01A-01D-1625-08	1465001	16177991	164737269	308	149786											
PRDM9	56979	broad.mit.edu	37	chr5	23509160	23509160	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accatgagccctgaaaagtcCcaagaggagagcccagaaga	11	11	0	6			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509160	T	T	23509160	2	4	188	1	0	0	0	0	0	0	0	1	12569	610	22	4		4	PRDM9	5	23509160	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	7331169	23509160	157406100	309	149787											
CDH10	1008	broad.mit.edu	37	chr5	24487754	24487754	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttactttctcttgtttgaaCagaacatatatcctacgtta	5	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24487754	A	A	24487754	1	1	188	0	1	0	0	0	0	0	0	0	3126	493	17	3		3	CDH10	5	24487754	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	978594	24487754	156427506	310	149788											
CDH10	1008	broad.mit.edu	37	chr5	24509645	24509645	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtgagccaccgagcccgGctgttttcatttttaaaagg	12	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24509645	T	T	24509645	1	4	188	0	1	0	0	0	0	0	0	0	3126	1218	42	3		3	CDH10	5	24509645	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	21891	24509645	156405615	311	149789											
CDH9	1007	broad.mit.edu	37	chr5	26881757	26881757	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taataagaaatgggaaaataGtgagatttcatgagtcagga	11	2	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26881757	T	T	26881757	1	4	188	0	1	0	0	0	0	0	0	0	3147	1044	36	3		3	CDH9	5	26881757	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2372112	26881757	154033503	312	149790											
MTMR12	54545	broad.mit.edu	37	chr5	32235275	32235275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacttggtgggcagagccCagagcaagccatcctgagtt	13	10	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32235275	A	A	32235275	1	1	188	0	1	0	0	0	0	0	0	0	10035	609	21	2		2	MTMR12	5	32235275	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5353518	32235275	148679985	313	149791											
ADAMTS12	81792	broad.mit.edu	37	chr5	33535096	33535096	+	Missense_Mutation	SNP	C	A	A													cacctccacaggaagtggaaCactgaaagagaaggtgaaca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33535096	A	A	33535096	3	1	188	1	0	0	0	0	1	0	0	0	257	492	17	3	344	3	ADAMTS12	5	33535096	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1299821	33535096	147380164	314	149792	647	2									
ADAMTS12	81792	broad.mit.edu	37	chr5	33535098	33535098	+	Splice_Site	SNP	C	A	A													cctccacaggaagtggaacaCtgaaagagaaggtgaacaga							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33535098	A	A	33535098	5	1	188	1	0	0	0	0	0	0	1	0	257	579	20	3	346	3	ADAMTS12	5	33535098	Splice_Site	SNP	C	TCGA-64-5775-01A-01D-1625-08	2	33535098	147380162	315	149793	647	2									
ADAMTS12	81792	broad.mit.edu	37	chr5	33616225	33616225	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcacgccagcttctcagCtgaatgcaatctgtttgtga	11	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33616225	A	A	33616225	1	1	188	0	1	0	0	0	0	0	0	0	257	812	28	3		3	ADAMTS12	5	33616225	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	81127	33616225	147299035	316	149794											
SLC45A2	51151	broad.mit.edu	37	chr5	33947230	33947230	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccagccttcagatgagtcTggatgttacccaaggcagag	11	12	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33947230	A	A	33947230	1	1	188	0	1	0	0	0	0	0	0	0	14755	1595	55	5		5	SLC45A2	5	33947230	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	331005	33947230	146968030	317	149795											
RAI14	26064	broad.mit.edu	37	chr5	34803879	34803879	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgcatcaggaagctgcttCaggtaagctggtgacaactt	11	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34803879	T	T	34803879	4	4	188	1	0	0	0	0	0	1	0	0	13116	827	29	4	398	4	RAI14	5	34803879	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	856649	34803879	146111381	318	149796											
SPEF2	79925	broad.mit.edu	37	chr5	35727671	35727671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaaaagcttaaaaagtaGttaatgaatcacctgaagtc	6	6	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35727671	T	T	35727671	1	4	188	0	1	0	0	0	0	0	0	0	15153	1044	36	3		3	SPEF2	5	35727671	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	923792	35727671	145187589	319	149797											
IL7R	3575	broad.mit.edu	37	chr5	35871071	35871071	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgacacaaaaagggtcaaaGtgacttgcagaggagatgaa	12	6	1	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35871071	C	C	35871071	1	2	188	0	1	0	0	0	0	0	0	0	7775	1044	36	4		4	IL7R	5	35871071	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	143400	35871071	145044189	320	149798											
C5orf42	65250	broad.mit.edu	37	chr5	37211527	37211527	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acattacttccagttccccgGaaagacgtatttttgcagag	8	10	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37211527	T	T	37211527	1	4	188	0	1	0	0	0	0	0	0	0	2324	1189	41	3		3	C5orf42	5	37211527	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1340456	37211527	143703733	321	149799											
WDR70	55100	broad.mit.edu	37	chr5	37438125	37438125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctctctcaaattacagGgctgtcatggaaaagtgaac	8	9	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37438125	T	T	37438125	1	4	188	0	1	0	0	0	0	0	0	0	17448	1247	43	2		2	WDR70	5	37438125	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	226598	37438125	143477135	322	149800											
RICTOR	253260	broad.mit.edu	37	chr5	38963016	38963016	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctgaactcggagatactGatcccgtttctggtgtgttg	11	8	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38963016	A	A	38963016	4	1	188	1	0	0	0	0	0	1	0	0	13467	1299	45	4	3686	4	RICTOR	5	38963016	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1524891	38963016	141952244	323	149801											
FYB	2533	broad.mit.edu	37	chr5	39127993	39127993	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agattttaattgtaaatcttCcttatttaactgcagagagc	6	6	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39127993	A	A	39127993	1	1	188	0	1	0	0	0	0	0	0	0	6184	870	30	3		3	FYB	5	39127993	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	164977	39127993	141787267	324	149802											
CARD6	84674	broad.mit.edu	37	chr5	40853331	40853331	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctgccctccaggaagtgAtgttctcttcttgcctcaga	9	12	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40853331	G	G	40853331	3	3	188	1	0	0	0	0	1	0	0	0	2676	333	12	5	1907	5	CARD6	5	40853331	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	1725338	40853331	140061929	325	149803											
GHR	2690	broad.mit.edu	37	chr5	42467361	42467361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attatctggtacataataagGtgtgaaaaacaactaaaggt	8	4	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42467361	T	T	42467361	1	4	188	0	1	0	0	0	0	0	0	0	6435	1276	44	3		3	GHR	5	42467361	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1614030	42467361	138447899	326	149804											
HMGCS1	3157	broad.mit.edu	37	chr5	43299125	43299125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttaggttataagttgCtggttttcaactttgaaatt	8	3	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43299125	A	A	43299125	1	1	188	0	1	0	0	0	0	0	0	0	7299	812	28	3		3	HMGCS1	5	43299125	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	831764	43299125	137616135	327	149805											
HTR1A	3350	broad.mit.edu	37	chr5	63256879	63256879	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcttgcggatgcggaagCgcgcagctcggaatatgcgc	15	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63256879	T	T	63256879	3	4	188	1	0	0	0	0	1	0	0	0	7506	768	27	4	603	4	HTR1A	5	63256879	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	19957754	63256879	117658381	328	149806											
CENPH	64946	broad.mit.edu	37	chr5	68491617	68491617	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaagcttgcattagacAggtaattattacattttaaa	5	4	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68491617	T	T	68491617	3	4	188	1	0	0	0	0	1	0	0	0	3262	202	7	5	327	5	CENPH	5	68491617	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	5234738	68491617	112423643	329	149807											
FAM169A	26049	broad.mit.edu	37	chr5	74134644	74134644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagcccaacccgaatgCtggcttcatcgtaagaatga	11	10	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74134644	T	T	74134644	1	4	188	0	1	0	0	0	0	0	0	0	5532	812	28	4		4	FAM169A	5	74134644	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5643027	74134644	106780616	330	149808											
CMYA5	202333	broad.mit.edu	37	chr5	79032837	79032837	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatctagtgttagaaaagtCaagcagagatatgccagatc	9	6	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79032837	T	T	79032837	3	4	188	1	0	0	0	0	1	0	0	0	3622	838	29	4	8255	4	CMYA5	5	79032837	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	4898193	79032837	101882423	331	149809											
VCAN	1462	broad.mit.edu	37	chr5	82779290	82779290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttatgacccactttaaacCtgaatgcttgtgatttactt	5	8	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82779290	A	A	82779290	1	1	188	0	1	0	0	0	0	0	0	0	17265	696	24	2		2	VCAN	5	82779290	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3746453	82779290	98135970	332	149810											
HAPLN1	1404	broad.mit.edu	37	chr5	82937482	82937482	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatcacagcggtcatatcCgagaattttccaggcagcaa	9	12	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82937482	A	A	82937482	4	1	188	1	0	0	0	0	0	1	0	0	7020	661	23	1	170	1	HAPLN1	5	82937482	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	158192	82937482	97977778	333	149811											
FER	2241	broad.mit.edu	37	chr5	108203468	108203468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtttttttttttttcagGgaaggaaactgaaaaggcca	9	5	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108203468	T	T	108203468	3	4	188	1	0	0	0	0	1	0	0	0	5870	1246	43	2	496	2	FER	5	108203468	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	25265986	108203468	72711792	334	149812											
FER	2241	broad.mit.edu	37	chr5	108436279	108436279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatagaatgctggaaaactgAtgtatttgctacaatagaag	9	4	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108436279	T	T	108436279	1	4	188	0	1	0	0	0	0	0	0	0	5870	348	12	5		5	FER	5	108436279	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	232811	108436279	72478981	335	149813											
MCC	4163	broad.mit.edu	37	chr5	112384759	112384759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactgggcagtcactgagccTaagggtgtccccaagccact	11	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112384759	A	A	112384759	1	1	188	0	1	0	0	0	0	0	0	0	9466	1537	53	5		5	MCC	5	112384759	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	3948480	112384759	68530501	336	149814											
AQPEP	206338	broad.mit.edu	37	chr5	115361800	115361800	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaggatagctgcgtggctAaggagaaacacatagcttgt	13	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115361800	G	G	115361800	2	3	188	1	0	0	0	0	0	0	0	1	836	349	13	5		5	AQPEP	5	115361800	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	2977041	115361800	65553460	337	149815											
FBN2	2201	broad.mit.edu	37	chr5	127607681	127607681	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaagtgcgatggaagaaaaGagcactcaccgacacactga	11	10	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127607681	T	T	127607681	1	4	188	0	1	0	0	0	0	0	0	0	5760	957	33	3		3	FBN2	5	127607681	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	12245881	127607681	53307579	338	149816											
AFF4	27125	broad.mit.edu	37	chr5	132235414	132235414	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaaatatctactaaaaattCtagaaataatcactgtggta	4	6	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132235414	A	A	132235414	1	1	188	0	1	0	0	0	0	0	0	0	359	928	32	3		3	AFF4	5	132235414	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4627733	132235414	48679846	339	149817											
PKD2L2	27039	broad.mit.edu	37	chr5	137260863	137260864	+	Intron	INS	-	T	T													tatatgagaaccttataaggINSttttttttgttttttgtttg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137260864	T	T	137260863	6	5	188	0	1	1	1	0	0	0	0	0	12063	1276	44	0		0	PKD2L2	5	137260863	Intron	INS	-	TCGA-64-5775-01A-01D-1625-08	5025449	137260863	43654397	340	149818											
PCDHA2	56146	broad.mit.edu	37	chr5	140175792	140175792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggacagcgccctggacCgcgagagcgtgtcagcctat	14	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140175792	A	A	140175792	3	1	188	1	0	0	0	0	1	0	0	0	11618	652	23	1	1245	1	PCDHA2	5	140175792	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2914929	140175792	40739468	341	149819											
PCDHA1	56147	broad.mit.edu	37	chr5	140189248	140189248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagagtcaaatttccctGggttaaaattttacctcttt	5	8	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140189248	T	T	140189248	1	4	188	0	1	0	0	0	0	0	0	0	11613	1363	47	2		2	PCDHA1	5	140189248	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	13456	140189248	40726012	342	149820											
PCDHA13	56136	broad.mit.edu	37	chr5	140263227	140263227	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccggcgttcgcgcagccCgagtacacggtgttcgtgaa	15	13	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140263227	A	A	140263227	2	1	188	1	0	0	0	0	0	0	0	1	11617	639	23	1		1	PCDHA13	5	140263227	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	73979	140263227	40652033	343	149821											
PCDHB2	56133	broad.mit.edu	37	chr5	140475761	140475761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctacaccctgttcgtcCgcgagaacaacagccccgcc	7	20	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140475761	A	A	140475761	3	1	188	1	0	0	0	0	1	0	0	0	11636	652	23	1	1389	1	PCDHB2	5	140475761	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	212534	140475761	40439499	344	149822											
PCDHB7	56129	broad.mit.edu	37	chr5	140554470	140554470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaggccaactcgctcaCcgtctacctggtggtggcgt	13	14	2	0	rs17844475		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140554470	A	A	140554470	3	1	188	1	0	0	0	0	1	0	0	0	11641	507	18	3	2056	3	PCDHB7	5	140554470	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	78709	140554470	40360790	345	149823											
PCDHB10	56126	broad.mit.edu	37	chr5	140572519	140572519	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atataaatgatcacgcgccaGtatttcaggacaaagaaaca	7	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140572519	C	C	140572519	3	2	188	1	0	0	0	0	1	0	0	0	11629	1029	36	4	396	4	PCDHB10	5	140572519	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	18049	140572519	40342741	346	149824											
PCDHB15	56121	broad.mit.edu	37	chr5	140627409	140627409	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctaccagtacgaggtgtgtCtgacgggaggctctgaaagt	15	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140627409	A	A	140627409	3	1	188	1	0	0	0	0	1	0	0	0	11634	912	32	3	2265	3	PCDHB15	5	140627409	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	54890	140627409	40287851	347	149825											
PCDHGB3	56102	broad.mit.edu	37	chr5	140750841	140750841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgagacaactgttcaagCtggacagtaaaacgggggaa	13	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140750841	A	A	140750841	3	1	188	1	0	0	0	0	1	0	0	0	11658	796	28	3	882	3	PCDHGB3	5	140750841	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	123432	140750841	40164419	348	149826											
PCDHGB3	56102	broad.mit.edu	37	chr5	140752016	140752016	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccactccctctgaccctcaGgcggagctacagtttcacct	7	18	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140752016	A	A	140752016	2	1	188	1	0	0	0	0	0	0	0	1	11658	991	35	4		4	PCDHGB3	5	140752016	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1175	140752016	40163244	349	149827											
PCDHGA2	56113	broad.mit.edu	37	chr5	140762382	140762382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattctgagctccccttcCtaagacagaggggtccaccc	10	14	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140762382	A	A	140762382	1	1	188	0	1	0	0	0	0	0	0	0	11648	696	24	2		2	PCDHGA2	5	140762382	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	10366	140762382	40152878	350	149828											
PCDHGA7	56108	broad.mit.edu	37	chr5	140763012	140763012	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccacttctccctggctgtGcaaagtggagacgatgaaac	11	12	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140763012	A	A	140763012	2	1	188	1	0	0	0	0	0	0	0	1	11653	1306	46	4		4	PCDHGA7	5	140763012	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	630	140763012	40152248	351	149829											
PCDHGB5	56101	broad.mit.edu	37	chr5	140779392	140779392	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccccgcgctgggtcccgaCggctctgcgctcttcgatat	11	16	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140779392	G	G	140779392	3	3	188	1	0	0	0	0	1	0	0	0	11660	535	19	4	1700	4	PCDHGB5	5	140779392	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	16380	140779392	40135868	352	149830											
PCDH1	5097	broad.mit.edu	37	chr5	141248253	141248253	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacacgcagcagggcactgcTggcgcgtggggggctgccgc	19	13	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141248253	A	A	141248253	3	1	188	1	0	0	0	0	1	0	0	0	11600	1580	55	5	3029	5	PCDH1	5	141248253	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	468861	141248253	39667007	353	149831											
YIPF5	81555	broad.mit.edu	37	chr5	143549609	143549609	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcagtctgcttaagcaaAtagaaacacaacaaatattt	6	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143549609	C	C	143549609	1	2	188	0	1	0	0	0	0	0	0	0	17608	116	4	5		5	YIPF5	5	143549609	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	2301356	143549609	37365651	354	149832											
RBM27	54439	broad.mit.edu	37	chr5	145643117	145643117	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagttcctgttaaacatcgtCttggacatgcaggtggtaac	10	8	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145643117	T	T	145643117	3	4	188	1	0	0	0	0	1	0	0	0	13235	913	32	4	2308	4	RBM27	5	145643117	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2093508	145643117	35272143	355	149833											
SPINK5	11005	broad.mit.edu	37	chr5	147475357	147475357	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatcggaagcatctctActcatttattttactttttc	5	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147475357	G	G	147475357	1	3	188	0	1	0	0	0	0	0	0	0	15180	406	14	5		5	SPINK5	5	147475357	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1832240	147475357	33439903	356	149834											
PPARGC1B	133522	broad.mit.edu	37	chr5	149221758	149221758	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccacgggagcccactccCagaggggccccaggaagcca	12	17	0	1	rs34694241		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149221758	T	T	149221758	1	4	188	0	1	0	0	0	0	0	0	0	12397	609	21	4		4	PPARGC1B	5	149221758	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1746401	149221758	31693502	357	149835											
SLC36A3	285641	broad.mit.edu	37	chr5	150657056	150657056	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atacaccctaaaaggcccacGatgctaatcatgatgtcctt	6	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150657056	A	A	150657056	2	1	188	1	0	0	0	0	0	0	0	1	14709	1048	37	4		4	SLC36A3	5	150657056	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1435298	150657056	30258204	358	149836											
LARP1	23367	broad.mit.edu	37	chr5	154173579	154173579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacgtgaggcccctttgGgctccgggatgtccaagggt	15	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154173579	T	T	154173579	1	4	188	0	1	0	0	0	0	0	0	0	8700	1247	43	2		2	LARP1	5	154173579	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3516523	154173579	26741681	359	149837											
LARP1	23367	broad.mit.edu	37	chr5	154182849	154182849	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatctcatgacctctgcaGcaagaagtcgagaacttcaa	7	12	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154182849	A	A	154182849	5	1	188	1	0	0	0	0	0	0	1	0	8700	985	34	4	1924	4	LARP1	5	154182849	Splice_Site	SNP	G	TCGA-64-5775-01A-01D-1625-08	9270	154182849	26732411	360	149838											
TIMD4	91937	broad.mit.edu	37	chr5	156378470	156378470	+	Intron	DEL	C	-	-													gagagcaagtcactgggctgCctcattcagtgagacagcac							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156378470	-	-	156378470	6	5	188	0	1	1	0	1	0	0	0	0	16026	754	26	0		0	TIMD4	5	156378470	Intron	DEL	C	TCGA-64-5775-01A-01D-1625-08	2195621	156378470	24536790	361	149839											
FAM71B	153745	broad.mit.edu	37	chr5	156590160	156590160	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcctgcaaacgccgcactCaagctgctgtcttgggagag	12	13	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156590160	A	A	156590160	3	1	188	1	0	0	0	0	1	0	0	0	5659	825	29	3	705	3	FAM71B	5	156590160	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	211690	156590160	24325100	362	149840											
ADAM19	8728	broad.mit.edu	37	chr5	156915298	156915298	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacgatgcaatttggtgcgGggggaattggccggcttgga	17	6	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156915298	T	T	156915298	3	4	188	1	0	0	0	0	1	0	0	0	240	1232	43	2	243	2	ADAM19	5	156915298	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	325138	156915298	23999962	363	149841											
GABRA1	2554	broad.mit.edu	37	chr5	161302527	161302527	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttatcaagaagtatctaaTctatatggctcttgtttgta	6	6	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161302527	A	A	161302527	1	1	188	0	1	0	0	0	0	0	0	0	6220	1450	50	5		5	GABRA1	5	161302527	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4387229	161302527	19612733	364	149842											
SLIT3	6586	broad.mit.edu	37	chr5	168123464	168123464	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaggggtggagagcagGggagtcaggggtcagggaga	23	3	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168123464	A	A	168123464	1	1	188	0	1	0	0	0	0	0	0	0	14855	1247	43	4		4	SLIT3	5	168123464	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6820937	168123464	12791796	365	149843											
DOCK2	1794	broad.mit.edu	37	chr5	169097693	169097693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgacttggaagagctgaGggttgctcagcttatcttct	11	8	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169097693	T	T	169097693	1	4	188	0	1	0	0	0	0	0	0	0	4727	1015	35	2		2	DOCK2	5	169097693	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	974229	169097693	11817567	366	149844											
DOCK2	1794	broad.mit.edu	37	chr5	169139279	169139279	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtgcaggaagaaaggGggtgatggcaaaattgctta	18	3	0	2	rs77856207	byFrequency;by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169139279	T	T	169139279	1	4	188	0	1	0	0	0	0	0	0	0	4727	1247	43	2		2	DOCK2	5	169139279	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	41586	169139279	11775981	367	149845											
DOCK2	1794	broad.mit.edu	37	chr5	169505955	169505955	+	Intron	DEL	A	-	-													aagctctaactgcagtttctAttgctgcccctctggccttt							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169505955	-	-	169505955	6	5	188	0	1	1	0	1	0	0	0	0	4727	464	16	0		0	DOCK2	5	169505955	Intron	DEL	A	TCGA-64-5775-01A-01D-1625-08	366676	169505955	11409305	368	149846											
UNC5A	90249	broad.mit.edu	37	chr5	176297470	176297470	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgacccagcaccccgcaacgGaggggaggagtgccagggca	16	13	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176297470	A	A	176297470	3	1	188	1	0	0	0	0	1	0	0	0	17117	1174	41	4	843	4	UNC5A	5	176297470	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	6791515	176297470	4617790	369	149847											
GRK6	2870	broad.mit.edu	37	chr5	176859226	176859226	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcttctttgctttccaCcctgcaggccgagtatgaag	9	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176859226	T	T	176859226	1	4	188	0	1	0	0	0	0	0	0	0	6859	522	18	4		4	GRK6	5	176859226	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	561756	176859226	4056034	370	149848											
DDX41	51428	broad.mit.edu	37	chr5	176940637	176940637	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgcagtctgatgtggCgtgcagtggggggcggtgca	19	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176940637	T	T	176940637	1	4	188	0	1	0	0	0	0	0	0	0	4394	783	27	4		4	DDX41	5	176940637	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	81411	176940637	3974623	371	149849											
ADAMTS2	9509	broad.mit.edu	37	chr5	178579270	178579270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggaactggaagacagcaCcatagcttgccaggtccctc	10	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178579270	A	A	178579270	1	1	188	0	1	0	0	0	0	0	0	0	265	522	18	3		3	ADAMTS2	5	178579270	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1638633	178579270	2335990	372	149850											
TRIM41	90933	broad.mit.edu	37	chr5	180662378	180662381	+	3'UTR	DEL	GAGA	-	-													gccagaatttagcttcacttGagagagatctggaatggtcg					rs150126743		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	180662381	-	-	180662378	6	5	188	0	1	1	0	1	0	0	0	0	16640	1285	45	0		0	TRIM41	5	180662378	3'UTR	DEL	GAGA	TCGA-64-5775-01A-01D-1625-08	2083108	180662378	252882	373	149851											
F13A1	2162	broad.mit.edu	37	chr6	6318847	6318847	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgctgcattagagttattGggtggaactgctcttctgcc	11	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6318847	A	A	6318847	2	1	188	1	0	0	0	0	0	0	0	1	5383	1335	47	4		4	F13A1	6	6318847	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08		6318847	164796220	374	149852											
ELOVL2	54898	broad.mit.edu	37	chr6	10995395	10995395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttggagaaatagtaccacCaaagcaccttggctacctat	7	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10995395	A	A	10995395	3	1	188	1	0	0	0	0	1	0	0	0	5116	595	21	2	556	2	ELOVL2	6	10995395	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	4676548	10995395	160119672	375	149853											
DCDC2	51473	broad.mit.edu	37	chr6	24205410	24205410	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggaattacaatcaaatgCttatttttaatagacatttg	6	5	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24205410	T	T	24205410	1	4	188	0	1	0	0	0	0	0	0	0	4318	812	28	4		4	DCDC2	6	24205410	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	13210015	24205410	146909657	376	149854											
SLC17A1	6568	broad.mit.edu	37	chr6	25813179	25813179	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagactggaagcgacttAagtatagccttgataggcag	12	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25813179	C	C	25813179	2	2	188	1	0	0	0	0	0	0	0	1	14529	349	13	5		5	SLC17A1	6	25813179	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	1607769	25813179	145301888	377	149855											
HIST1H1E	3008	broad.mit.edu	37	chr6	26157085	26157085	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcgccaagaagaccccaaAgaaggcgaagaagccggctg	14	11	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26157085	G	G	26157085	3	3	188	1	0	0	0	0	1	0	0	0	7193	72	3	5	469	5	HIST1H1E	6	26157085	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	343906	26157085	144957982	378	149856											
HIST1H2BD	3017	broad.mit.edu	37	chr6	26158556	26158556	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaggtccatcccgacacCggcatctcttccaaggcaat	8	15	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26158556	A	A	26158556	2	1	188	1	0	0	0	0	0	0	0	1	7210	639	23	1		1	HIST1H2BD	6	26158556	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1471	26158556	144956511	379	149857											
BTN1A1	696	broad.mit.edu	37	chr6	26508570	26508570	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggctgctggtaaggggggatCctgtggtgaatggagacccc	18	8	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26508570	G	G	26508570	1	3	188	0	1	0	0	0	0	0	0	0	1569	870	30	4		4	BTN1A1	6	26508570	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	350014	26508570	144606497	380	149858											
OR11A1	26531	broad.mit.edu	37	chr6	29394980	29394980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagagagccaggttgtgaCcaccagccccatgtaccgtc	10	15	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29394980	A	A	29394980	3	1	188	1	0	0	0	0	1	0	0	0	11018	507	18	3	512	3	OR11A1	6	29394980	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2886410	29394980	141720087	381	149859											
GABBR1	2550	broad.mit.edu	37	chr6	29589471	29589471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgccaagaggaggccccaCaagaaaaccaagggaaactc	11	11	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29589471	A	A	29589471	1	1	188	0	1	0	0	0	0	0	0	0	6215	493	17	3		3	GABBR1	6	29589471	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	194491	29589471	141525596	382	149860											
C6orf15	29113	broad.mit.edu	37	chr6	31079369	31079369	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccccagctgcctcctggaTaccgattaatatttccccag	6	15	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31079369	C	C	31079369	3	2	188	1	0	0	0	0	1	0	0	0	2359	1406	49	5	214	5	C6orf15	6	31079369	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1489898	31079369	140035698	383	149861											
HLA-C	3107	broad.mit.edu	37	chr6	31237187	31237187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaacaaaaaaaaagacCtggtcagagcccgcaggaga	12	8	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31237187	A	A	31237187	1	1	188	0	1	0	0	0	0	0	0	0	7264	696	24	2		2	HLA-C	6	31237187	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	157818	31237187	139877880	384	149862											
BAT2	7916	broad.mit.edu	37	chr6	31599147	31599147	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacggggccagaagcaggCcgaaagcctgcccgcggagt	16	13	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31599147	T	T	31599147	2	4	188	1	0	0	0	0	0	0	0	1	1324	726	26	4		4	BAT2	6	31599147	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	361960	31599147	139515920	385	149863											
TNXB	7148	broad.mit.edu	37	chr6	32014146	32014146	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcaaaggggccctgggctAccgtccaggacaggcgcaga	15	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32014146	T	T	32014146	3	4	188	1	0	0	0	0	1	0	0	0	16469	391	14	5	4363	5	TNXB	6	32014146	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	414999	32014146	139100921	386	149864											
TAP1	6890	broad.mit.edu	37	chr6	32818283	32818283	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagagattcccgcacctgCacttccagcaactgtggata	9	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32818283	A	A	32818283	2	1	188	1	0	0	0	0	0	0	0	1	15669	697	25	3		3	TAP1	6	32818283	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	804137	32818283	138296784	387	149865											
SPDEF	25803	broad.mit.edu	37	chr6	34512074	34512074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtagaaggcggacaggccCtgctcgggcgtggcgggtgg	21	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34512074	A	A	34512074	3	1	188	1	0	0	0	0	1	0	0	0	15142	680	24	2	868	2	SPDEF	6	34512074	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1693791	34512074	136602993	388	149866											
CPNE5	57699	broad.mit.edu	37	chr6	36724072	36724073	+	Missense_Mutation	DNP	CC	AA	AA													cattttctttttcgggtttaCcacctgcaggaaaaaccagt							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36724073	AA	AA	36724072	3	1	188	1	0	0	0	0	1	0	0	0	3847	507	18	3	958	3	CPNE5	6	36724072	Missense_Mutation	DNP	CC	TCGA-64-5775-01A-01D-1625-08	2211998	36724072	134390995	389	149867											
LRFN2	57497	broad.mit.edu	37	chr6	40399866	40399866	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttgaggagttccctacCaggcggtcatcgggggctac	14	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40399866	A	A	40399866	2	1	188	1	0	0	0	0	0	0	0	1	9025	581	21	2		2	LRFN2	6	40399866	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	3675794	40399866	130715201	390	149868											
TREM1	54210	broad.mit.edu	37	chr6	41254489	41254489	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcggaaagttgcacaacagGatatgaggccattcctggga	12	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41254489	T	T	41254489	1	4	188	0	1	0	0	0	0	0	0	0	16594	1189	41	3		3	TREM1	6	41254489	5'Flank	SNP	G	TCGA-64-5775-01A-01D-1625-08	854623	41254489	129860578	391	149869											
GUCA1A	2978	broad.mit.edu	37	chr6	42145924	42145924	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgtctcttggggcttgccGagatgggcggagccttgggt	18	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42145924	A	A	42145924	1	1	188	0	1	0	0	0	0	0	0	0	6953	1073	37	4		4	GUCA1A	6	42145924	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	891435	42145924	128969143	392	149870											
SLC29A1	2030	broad.mit.edu	37	chr6	44200467	44200467	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagttcagatcctgagggGccccagatggatccttgggg	14	10	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44200467	T	T	44200467	1	4	188	0	1	0	0	0	0	0	0	0	14648	1218	42	3		3	SLC29A1	6	44200467	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2054543	44200467	126914600	393	149871											
PGK2	5232	broad.mit.edu	37	chr6	49754088	49754088	+	Frame_Shift_Del	DEL	G	-	-													acaccattcttttgtgctttGgccatgatatctttaacgat							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49754088	-	-	49754088	7	5	188	1	0	1	0	1	0	0	0	0	11886	1335	47	0	444	0	PGK2	6	49754088	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	5553621	49754088	121360979	394	149872											
CRISP1	167	broad.mit.edu	37	chr6	49815803	49815803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcactgccttgtatgaccCagtgcaaatgaggaaatcta	8	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49815803	A	A	49815803	1	1	188	0	1	0	0	0	0	0	0	0	3911	609	21	2		2	CRISP1	6	49815803	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	61715	49815803	121299264	395	149873											
EFHC1	114327	broad.mit.edu	37	chr6	52343958	52343958	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattgggggcaagtaccttGgcaggactaaagttgttaaa	12	6	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52343958	T	T	52343958	3	4	188	1	0	0	0	0	1	0	0	0	4986	1348	47	2	1442	2	EFHC1	6	52343958	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2528155	52343958	118771109	396	149874											
HCRTR2	3062	broad.mit.edu	37	chr6	55119937	55119937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctttcttttctctagaccGtgtcggtgtctgtgtctgtc	9	10	5	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55119937	T	T	55119937	3	4	188	1	0	0	0	0	1	0	0	0	7069	1145	40	3	416	3	HCRTR2	6	55119937	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2775979	55119937	115995130	397	149875											
ZNF451	26036	broad.mit.edu	37	chr6	57012581	57012581	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttatgagatggatgaggtAgaaggtgaaactttgccatc	12	4	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57012581	G	G	57012581	2	3	188	1	0	0	0	0	0	0	0	1	18049	407	15	5		5	ZNF451	6	57012581	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	1892644	57012581	114102486	398	149876											
PRIM2	5558	broad.mit.edu	37	chr6	57398234	57398234	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatgcagtatgtcctatttCtgaagggcattggtttaact	10	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57398234	A	A	57398234	3	1	188	1	0	0	0	0	1	0	0	0	12597	912	32	3	971	3	PRIM2	6	57398234	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	385653	57398234	113716833	399	149877											
BAI3	577	broad.mit.edu	37	chr6	70049223	70049223	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttactttcttggtctcaacAgggcgtctctttggagctcc	10	11	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70049223	T	T	70049223	5	4	188	1	0	0	0	0	0	0	1	0	1305	202	7	5	3380	5	BAI3	6	70049223	Splice_Site	SNP	A	TCGA-64-5775-01A-01D-1625-08	12650989	70049223	101065844	400	149878											
COL19A1	1310	broad.mit.edu	37	chr6	70859702	70859702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggaaatgactgaaagacCatcctcataagtaactgttt	10	7	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70859702	A	A	70859702	1	1	188	0	1	0	0	0	0	0	0	0	3708	609	21	2		2	COL19A1	6	70859702	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	810479	70859702	100255365	401	149879											
FAM135A	57579	broad.mit.edu	37	chr6	71195938	71195938	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctacgaacacagaaagacAaccatctaggtacgtttaca	7	10	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71195938	G	G	71195938	1	3	188	0	1	0	0	0	0	0	0	0	5494	130	5	5		5	FAM135A	6	71195938	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	336236	71195938	99919129	402	149880											
CD109	135228	broad.mit.edu	37	chr6	74490336	74490336	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaaatgtgtcactgaagcGcagtcttatgtaagtataat	8	5	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74490336	A	A	74490336	1	1	188	0	1	0	0	0	0	0	0	0	2993	1102	38	4		4	CD109	6	74490336	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3294398	74490336	96624731	403	149881											
COL12A1	1303	broad.mit.edu	37	chr6	75848160	75848160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctatttgaaagctaaacacCtacgtgtgcgctcactgcca	7	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75848160	T	T	75848160	1	4	188	0	1	0	0	0	0	0	0	0	3701	696	24	4		4	COL12A1	6	75848160	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1357824	75848160	95266907	404	149882											
COL12A1	1303	broad.mit.edu	37	chr6	75865853	75865853	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttagacattgtctagtaAttataatttaacttattacg	4	4	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75865853	C	C	75865853	1	2	188	0	1	0	0	0	0	0	0	0	3701	116	4	5		5	COL12A1	6	75865853	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	17693	75865853	95249214	405	149883											
IMPG1	3617	broad.mit.edu	37	chr6	76731783	76731783	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttttcctgttttgctaaaGaacaaaaacaggcacatgaa	6	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76731783	A	A	76731783	1	1	188	0	1	0	0	0	0	0	0	0	7798	957	33	4		4	IMPG1	6	76731783	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	865930	76731783	94383284	406	149884											
ELOVL4	6785	broad.mit.edu	37	chr6	80629067	80629067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctaaaatgacattgcaCtttaaaattaatcaaattta	3	5	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80629067	A	A	80629067	1	1	188	0	1	0	0	0	0	0	0	0	5118	580	20	3		3	ELOVL4	6	80629067	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3897284	80629067	90486000	407	149885											
IBTK	25998	broad.mit.edu	37	chr6	82912470	82912470	+	Intron	DEL	A	-	-													tttgaacatttggaataaagAaaaaaaagtttcttgccaaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	82912470	-	-	82912470	6	5	188	0	1	1	0	1	0	0	0	0	7546	261	9	0		0	IBTK	6	82912470	Intron	DEL	A	TCGA-64-5775-01A-01D-1625-08	2283403	82912470	88202597	408	149886											
HTR1E	3354	broad.mit.edu	37	chr6	87726279	87726279	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgtgtggtcttgtttcCttgtttgtttgtttgttttg	11	3	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87726279	A	A	87726279	1	1	188	0	1	0	0	0	0	0	0	0	7509	696	24	2		2	HTR1E	6	87726279	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	4813809	87726279	83388788	409	149887											
MDN1	23195	broad.mit.edu	37	chr6	90362924	90362924	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tataatattagcctgatgacTgaccaagcctttgctattgc	7	9	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90362924	A	A	90362924	1	1	188	0	1	0	0	0	0	0	0	0	9508	1595	55	5		5	MDN1	6	90362924	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2636645	90362924	80752143	410	149888											
C6orf168	84553	broad.mit.edu	37	chr6	99729024	99729024	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtcccaaggaagagggTcagtgaggctggacgtcact	16	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99729024	G	G	99729024	1	3	188	0	1	0	0	0	0	0	0	0	2366	1682	58	5		5	C6orf168	6	99729024	3'UTR	SNP	T	TCGA-64-5775-01A-01D-1625-08	9366100	99729024	71386043	411	149889											
MCHR2	84539	broad.mit.edu	37	chr6	100368793	100368793	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatagacaatcatgtctagaCtcatggtgatccatgtactt	8	8	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100368793	T	T	100368793	1	4	188	0	1	0	0	0	0	0	0	0	9476	580	20	4		4	MCHR2	6	100368793	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	639769	100368793	70746274	412	149890											
ASCC3	10973	broad.mit.edu	37	chr6	101214441	101214441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctaggtaaacaacatacCtgagttcgtaaaatttcact	5	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101214441	A	A	101214441	3	1	188	1	0	0	0	0	1	0	0	0	1037	695	24	2	5003	2	ASCC3	6	101214441	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	845648	101214441	69900626	413	149891											
GRIK2	2898	broad.mit.edu	37	chr6	102372516	102372517	+	Missense_Mutation	DNP	CC	AA	AA													ataatccacacccttgcaacCctgactcagacgtggtggaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	102372517	AA	AA	102372516	3	1	188	1	0	0	0	0	1	0	0	0	6840	623	22	2	1835	2	GRIK2	6	102372516	Missense_Mutation	DNP	CC	TCGA-64-5775-01A-01D-1625-08	1158075	102372516	68742551	414	149892											
NR2E1	7101	broad.mit.edu	37	chr6	108496159	108496159	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccctttattccaatgttgAttgagtagtaagtaaattat	6	5	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108496159	T	T	108496159	1	4	188	0	1	0	0	0	0	0	0	0	10720	348	12	5		5	NR2E1	6	108496159	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	6123643	108496159	62618908	415	149893											
FYN	2534	broad.mit.edu	37	chr6	112025246	112025246	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaaaggtacctcttgggTttccaaaggacaatagctgt	10	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112025246	A	A	112025246	3	1	188	1	0	0	0	0	1	0	0	0	6186	1725	60	5	1302	5	FYN	6	112025246	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	3529087	112025246	59089821	416	149894											
RFX6	222546	broad.mit.edu	37	chr6	117241716	117241716	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcctgtccagtgtgctGtaggatgtttagcagcatcc	13	9	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117241716	A	A	117241716	1	1	188	0	1	0	0	0	0	0	0	0	13375	1392	48	4		4	RFX6	6	117241716	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	5216470	117241716	53873351	417	149895											
LAMA2	3908	broad.mit.edu	37	chr6	129250249	129250249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactgtggaccgcagcagCgttttcccgtacagatccaa	9	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129250249	A	A	129250249	1	1	188	0	1	0	0	0	0	0	0	0	8678	783	27	3		3	LAMA2	6	129250249	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	12008533	129250249	41864818	418	149896											
LAMA2	3908	broad.mit.edu	37	chr6	129468000	129468000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacacaaatgtccttcaaaCtaaggataaaagcagaaaat	5	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129468000	A	A	129468000	1	1	188	0	1	0	0	0	0	0	0	0	8678	580	20	3		3	LAMA2	6	129468000	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	217751	129468000	41647067	419	149897											
EYA4	2070	broad.mit.edu	37	chr6	133827162	133827162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcttctccctcttccacCacagcaatatgtgcttaaaa	4	14	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133827162	A	A	133827162	1	1	188	0	1	0	0	0	0	0	0	0	5374	609	21	2		2	EYA4	6	133827162	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4359162	133827162	37287905	420	149898											
SGK1	6446	broad.mit.edu	37	chr6	134494709	134494709	+	Intron	DEL	A	-	-													gctgagaaggacttggctagAaaaaaaaaaaaagaatttct					rs113667538		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134494709	-	-	134494709	6	5	188	0	1	1	0	1	0	0	0	0	14320	261	9	0		0	SGK1	6	134494709	Intron	DEL	A	TCGA-64-5775-01A-01D-1625-08	667547	134494709	36620358	421	149899											
GPR126	57211	broad.mit.edu	37	chr6	142630733	142630733	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	attggaaatggaagcccagtCctctcctgttcttatttgct	8	10	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142630733	T	T	142630733	3	4	188	1	0	0	0	0	1	0	0	0	6705	855	30	4	61	4	GPR126	6	142630733	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	8136024	142630733	28484334	422	149900											
PPIL4	85313	broad.mit.edu	37	chr6	149854524	149854524	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttaagactactgaagagcCagaaataaacactcagtaag	7	7	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149854524	G	G	149854524	1	3	188	0	1	0	0	0	0	0	0	0	12430	609	21	4		4	PPIL4	6	149854524	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	7223791	149854524	21260543	423	149901											
SYNE1	23345	broad.mit.edu	37	chr6	152646446	152646446	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacactaaagcctagggttGggggtggaggacggaagaga	18	5	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152646446	A	A	152646446	1	1	188	0	1	0	0	0	0	0	0	0	15564	1363	47	4		4	SYNE1	6	152646446	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2791922	152646446	18468621	424	149902											
LPA	4018	broad.mit.edu	37	chr6	160998325	160998325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagggcttttctcaggtgGtgctgaaattaaaataaaat	9	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160998325	T	T	160998325	3	4	188	1	0	0	0	0	1	0	0	0	8990	1261	44	3	1696	3	LPA	6	160998325	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	8351879	160998325	10116742	425	149903											
PARK2	5071	broad.mit.edu	37	chr6	161969941	161969941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcctctggtcaggctccGgcagcagccccgctccacag	10	18	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161969941	T	T	161969941	3	4	188	1	0	0	0	0	1	0	0	0	11543	1116	39	1	385	1	PARK2	6	161969941	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	971616	161969941	9145126	426	149904											
RPS6KA2	6196	broad.mit.edu	37	chr6	166999852	166999852	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctattccattcctcaacaatTggaggagactcaggagggcg	11	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166999852	A	A	166999852	1	1	188	0	1	0	0	0	0	0	0	0	13762	1827	63	5		5	RPS6KA2	6	166999852	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	5029911	166999852	4115215	427	149905											
TCP10L2	401285	broad.mit.edu	37	chr6	167592552	167592552	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccggtggcagaaaatcaccAgtgcaggcttcccaggccgc	12	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167592552	T	T	167592552	2	4	188	1	0	0	0	0	0	0	0	1	15834	175	7	5		5	TCP10L2	6	167592552	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	592700	167592552	3522515	428	149906											
ADAP1	11033	broad.mit.edu	37	chr7	943704	943705	+	Intron	DNP	CC	AA	AA													cacccaccttcctgcgccacCcgggcctgagggcccaccct							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	943705	AA	AA	943704	1	1	188	0	1	0	0	0	0	0	0	0	279	638	22	2		2	ADAP1	7	943704	Intron	DNP	CC	TCGA-64-5775-01A-01D-1625-08		943704	158194959	429	149907											
MAD1L1	8379	broad.mit.edu	37	chr7	2108973	2108973	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttctccagcccccgggcGctgcatgggagagacaagag	14	14	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2108973	A	A	2108973	2	1	188	1	0	0	0	0	0	0	0	1	9235	1101	38	4		4	MAD1L1	7	2108973	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1165269	2108973	157029690	430	149908											
TTYH3	80727	broad.mit.edu	37	chr7	2696151	2696151	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgtctgcagcgtcccgcaCacctggcagcaaaagaggtg	12	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2696151	T	T	2696151	2	4	188	1	0	0	0	0	0	0	0	1	16867	477	17	4		4	TTYH3	7	2696151	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	587178	2696151	156442512	431	149909											
GLCCI1	113263	broad.mit.edu	37	chr7	8062173	8062174	+	Missense_Mutation	DNP	TG	AT	AT													cacatcagcgttctgcgtcaTgggggagtgctgatcaacta							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	8062174	AT	AT	8062173	3	1	188	1	0	0	0	0	1	0	0	0	6495	1464	51	5	680	5	GLCCI1	7	8062173	Missense_Mutation	DNP	TG	TCGA-64-5775-01A-01D-1625-08	5366022	8062173	151076490	432	149910											
ARL4A	10124	broad.mit.edu	37	chr7	12728635	12728635	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgcccaactctgttgcCttgtggaagatgagtaaatg	11	8	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12728635	A	A	12728635	1	1	188	0	1	0	0	0	0	0	0	0	940	696	24	2		2	ARL4A	7	12728635	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	4666462	12728635	146410028	433	149911											
DNAH11	8701	broad.mit.edu	37	chr7	21730382	21730382	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaacattctttttatggtaGatttgtatttcttggggaag	9	4	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21730382	C	C	21730382	5	2	188	1	0	0	0	0	0	0	1	0	4639	956	33	4	6084	4	DNAH11	7	21730382	Splice_Site	SNP	G	TCGA-64-5775-01A-01D-1625-08	9001747	21730382	137408281	434	149912											
NPVF	64111	broad.mit.edu	37	chr7	25264849	25264849	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacaacagcatgcaagtgTgtatacaaatacaagccata	7	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25264849	G	G	25264849	1	3	188	0	1	0	0	0	0	0	0	0	10700	1711	59	5		5	NPVF	7	25264849	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	3534467	25264849	133873814	435	149913											
HOXA6	3203	broad.mit.edu	37	chr7	27185361	27185361	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctttttccacttcatgcgGcggttctggaaccagatctt	8	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27185361	C	C	27185361	2	2	188	1	0	0	0	0	0	0	0	1	7363	1190	42	4		4	HOXA6	7	27185361	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1920512	27185361	131953302	436	149914											
HOXA13	3209	broad.mit.edu	37	chr7	27238027	27238027	+	Nonsense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcttctttctccccctcctAtaggagctggcatccgaggg	10	15	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27238027	C	C	27238027	4	2	188	1	0	0	0	0	0	1	0	0	7358	456	16	5	213	5	HOXA13	7	27238027	Nonsense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	52666	27238027	131900636	437	149915											
TAX1BP1	8887	broad.mit.edu	37	chr7	27856405	27856405	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataaaaacatctatttttttCacatgccaaagtggttcttt	4	7	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27856405	T	T	27856405	1	4	188	0	1	0	0	0	0	0	0	0	15713	841	29	4		4	TAX1BP1	7	27856405	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	618378	27856405	131282258	438	149916											
CHN2	1124	broad.mit.edu	37	chr7	29539446	29539446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttgtgctttgacaaaaGggctgggctaggctaatgtg	15	5	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29539446	T	T	29539446	1	4	188	0	1	0	0	0	0	0	0	0	3394	1015	35	2		2	CHN2	7	29539446	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1683041	29539446	129599217	439	149917											
GHRHR	2692	broad.mit.edu	37	chr7	31015322	31015322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagtccccaaatgggctgGggctcaccccagccacccaa	9	17	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31015322	T	T	31015322	1	4	188	0	1	0	0	0	0	0	0	0	6437	1247	43	2		2	GHRHR	7	31015322	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1475876	31015322	128123341	440	149918											
VPS41	27072	broad.mit.edu	37	chr7	38948571	38948571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctttccctaggtgccctcCcggggctggcatcctctctg	11	17	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38948571	A	A	38948571	1	1	188	0	1	0	0	0	0	0	0	0	17337	638	22	2		2	VPS41	7	38948571	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	7933249	38948571	120190092	441	149919											
AEBP1	165	broad.mit.edu	37	chr7	44148746	44148746	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagccccaaggaggagacCgacaagtgggcagtggagaa	16	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44148746	T	T	44148746	2	4	188	1	0	0	0	0	0	0	0	1	349	639	23	4		4	AEBP1	7	44148746	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	5200175	44148746	114989917	442	149920											
PKD1L1	168507	broad.mit.edu	37	chr7	47842854	47842854	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggcgcatcatggaggagCaggatgccattgtgttttga	15	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47842854	T	T	47842854	3	4	188	1	0	0	0	0	1	0	0	0	12059	710	25	4	653	4	PKD1L1	7	47842854	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3694108	47842854	111295809	443	149921											
PKD1L1	168507	broad.mit.edu	37	chr7	47920224	47920224	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcaactgcttagcctttaCgctgatgtagacctgcaccc	9	13	0	2	rs112196795		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47920224	G	G	47920224	1	3	188	0	1	0	0	0	0	0	0	0	12059	551	19	4		4	PKD1L1	7	47920224	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	77370	47920224	111218439	444	149922											
ZPBP	11055	broad.mit.edu	37	chr7	50070781	50070781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaggaaatttcacatgaaaGgtcaagaagcagtttgctta	9	5	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50070781	T	T	50070781	3	4	188	1	0	0	0	0	1	0	0	0	18348	1000	35	2	458	2	ZPBP	7	50070781	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2150557	50070781	109067882	445	149923											
DDC	1644	broad.mit.edu	37	chr7	50605626	50605626	+	Missense_Mutation	SNP	C	A	A													tggtagttccagcatcttccCgagccagtccatcatcacag							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50605626	A	A	50605626	3	1	188	1	0	0	0	0	1	0	0	0	4358	652	23	1	1119	1	DDC	7	50605626	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	534845	50605626	108533037	446	149924	648	2									
DDC	1644	broad.mit.edu	37	chr7	50605628	50605628	+	Missense_Mutation	SNP	A	C	C													gtagttccagcatcttcccgAgccagtccatcatcacagtc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50605628	C	C	50605628	3	2	188	1	0	0	0	0	1	0	0	0	4358	304	11	5	1121	5	DDC	7	50605628	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	2	50605628	108533035	447	149925	648	2									
COBL	23242	broad.mit.edu	37	chr7	51287625	51287625	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccaggaggtgggggagcacGagccttcatcttcctcctta	12	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51287625	A	A	51287625	3	1	188	1	0	0	0	0	1	0	0	0	3685	1058	37	4	3775	4	COBL	7	51287625	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	681997	51287625	107851038	448	149926											
ZNF716	441234	broad.mit.edu	37	chr7	57509920	57509920	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccagagctccagtccttctCttcactgctctgcgtcctct	6	18	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57509920	A	A	57509920	1	1	188	0	1	0	0	0	0	0	0	0	18247	928	32	3		3	ZNF716	7	57509920	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	6222295	57509920	101628743	449	149927											
ZNF716	441234	broad.mit.edu	37	chr7	57522863	57522863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagaaatgagatggtagCcaaacacccaggtaggtgag	13	6	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57522863	A	A	57522863	3	1	188	1	0	0	0	0	1	0	0	0	18247	739	26	3	261	3	ZNF716	7	57522863	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	12943	57522863	101615800	450	149928											
ASL	435	broad.mit.edu	37	chr7	65557514	65557514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggcatggagaaacctgcCtcagcgccatcttcctccct	9	16	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65557514	T	T	65557514	1	4	188	0	1	0	0	0	0	0	0	0	1048	696	24	4		4	ASL	7	65557514	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	8034651	65557514	93581149	451	149929											
FZD9	8326	broad.mit.edu	37	chr7	72849355	72849355	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgacgctcacctggttcCtggctgccgggaagaaatgg	13	12	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72849355	G	G	72849355	3	3	188	1	0	0	0	0	1	0	0	0	6197	680	24	4	1020	4	FZD9	7	72849355	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	7291841	72849355	86289308	452	149930											
BAZ1B	9031	broad.mit.edu	37	chr7	72912698	72912698	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attttagttgttctatgaatCataaatgaacaaaatcatgt	5	4	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72912698	G	G	72912698	1	3	188	0	1	0	0	0	0	0	0	0	1335	841	29	4		4	BAZ1B	7	72912698	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	63343	72912698	86225965	453	149931											
NCF1	653361	broad.mit.edu	37	chr7	74193544	74193544	+	Intron	DEL	G	-	-													cctgtcagggggtcattggcGggggctcacctgccctccca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74193544	-	-	74193544	6	5	188	0	1	1	0	1	0	0	0	0	10311	1131	39	0		0	NCF1	7	74193544	Intron	DEL	G	TCGA-64-5775-01A-01D-1625-08	1280846	74193544	84945119	454	149932											
HGF	3082	broad.mit.edu	37	chr7	81346723	81346723	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacatcacaagatgctcattCcatccaagagacacaaaata	4	12	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81346723	T	T	81346723	1	4	188	0	1	0	0	0	0	0	0	0	7152	870	30	4		4	HGF	7	81346723	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	7153179	81346723	77791940	455	149933											
CACNA2D1	781	broad.mit.edu	37	chr7	81595047	81595047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgcattgtctttaccCcattatatacatgattagag	8	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81595047	A	A	81595047	1	1	188	0	1	0	0	0	0	0	0	0	2574	638	22	2		2	CACNA2D1	7	81595047	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	248324	81595047	77543616	456	149934											
GRM3	2913	broad.mit.edu	37	chr7	86415509	86415509	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaggtgtggatgctatTattcattttcatgtccagtc	9	6	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86415509	C	C	86415509	1	2	188	0	1	0	0	0	0	0	0	0	6864	1769	61	5		5	GRM3	7	86415509	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4820462	86415509	72723154	457	149935											
KIAA1324L	222223	broad.mit.edu	37	chr7	86537030	86537030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatttagtaggattacaCctcattttcacagcagttga	7	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86537030	A	A	86537030	3	1	188	1	0	0	0	0	1	0	0	0	8294	506	18	3	595	3	KIAA1324L	7	86537030	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	121521	86537030	72601633	458	149936											
KIAA1324L	222223	broad.mit.edu	37	chr7	86568131	86568131	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactagttctacctgaaaaTtgagagtcgtctttacacct	6	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86568131	C	C	86568131	2	2	188	1	0	0	0	0	0	0	0	1	8294	1490	52	5		5	KIAA1324L	7	86568131	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	31101	86568131	72570532	459	149937											
ABCB1	5243	broad.mit.edu	37	chr7	87160537	87160537	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagagcatagtaagcagtaGggagtaacaaaataacactg	10	5	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87160537	A	A	87160537	1	1	188	0	1	0	0	0	0	0	0	0	40	1015	35	4		4	ABCB1	7	87160537	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	592406	87160537	71978126	460	149938											
DBF4	10926	broad.mit.edu	37	chr7	87530130	87530130	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctcaattcaactccagttGaaagagaagaagaaaaaagg	8	7	2	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87530130	A	A	87530130	2	1	188	1	0	0	0	0	0	0	0	1	4281	1281	45	4		4	DBF4	7	87530130	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	369593	87530130	71608533	461	149939											
DBF4	10926	broad.mit.edu	37	chr7	87537065	87537065	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtctgataacaataaacAgttcacaagagcacctaact	6	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87537065	G	G	87537065	3	3	188	1	0	0	0	0	1	0	0	0	4281	188	7	5	1658	5	DBF4	7	87537065	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	6935	87537065	71601598	462	149940											
SAMD9L	219285	broad.mit.edu	37	chr7	92762522	92762522	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtaaagccaggaaggaaatGagttgtgcttccttgctgtc	12	7	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92762522	A	A	92762522	2	1	188	1	0	0	0	0	0	0	0	1	13938	1277	45	4		4	SAMD9L	7	92762522	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	5225457	92762522	66376141	463	149941											
COL1A2	1278	broad.mit.edu	37	chr7	94052404	94052404	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttcgctggtgagaagGgtccctctggagaggctggt	17	9	1	2	rs72658196		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94052404	A	A	94052404	3	1	188	1	0	0	0	0	1	0	0	0	3710	1232	43	4	2697	4	COL1A2	7	94052404	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1289882	94052404	65086259	464	149942											
PEG10	23089	broad.mit.edu	37	chr7	94292998	94292998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacagaggagaacaccaccCttcgagagcaagtggaaccc	10	13	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94292998	A	A	94292998	3	1	188	1	0	0	0	0	1	0	0	0	11813	681	24	2	364	2	PEG10	7	94292998	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	240594	94292998	64845665	465	149943											
SHFM1	7979	broad.mit.edu	37	chr7	96324252	96324252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttctcatacattatttcCacaattacaaaaactttgaa	1	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96324252	A	A	96324252	1	1	188	0	1	0	0	0	0	0	0	0	14391	609	21	2		2	SHFM1	7	96324252	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2031254	96324252	62814411	466	149944											
NPTX2	4885	broad.mit.edu	37	chr7	98254541	98254541	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtggagggagccacagcCcccaccccagccgtcctcgc	13	18	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98254541	T	T	98254541	1	4	188	0	1	0	0	0	0	0	0	0	10698	638	22	4		4	NPTX2	7	98254541	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1930289	98254541	60884122	467	149945											
C7orf59	389541	broad.mit.edu	37	chr7	99746545	99746545	+	Translation_Start_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcacgtgaccggggcctgaAgccggaagctacctatctgg	14	12	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99746545	T	T	99746545	1	4	188	1	0	0	0	0	0	0	0	0	2431	87	3	5		5	C7orf59	7	99746545	Translation_Start_Site	SNP	A	TCGA-64-5775-01A-01D-1625-08	1492004	99746545	59392118	468	149946											
TFR2	7036	broad.mit.edu	37	chr7	100225567	100225567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgagacttgtcagaaggGggctggtcttggcatgaaac	14	7	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100225567	T	T	100225567	3	4	188	1	0	0	0	0	1	0	0	0	15934	1232	43	2	861	2	TFR2	7	100225567	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	479022	100225567	58913096	469	149947											
C7orf52	375607	broad.mit.edu	37	chr7	100815324	100815324	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggaaactgcggaagggggCgggtctttttccccctcccc	15	13	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100815324	A	A	100815324	1	1	188	0	1	0	0	0	0	0	0	0	2426	783	27	3		3	C7orf52	7	100815324	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	589757	100815324	58323339	470	149948											
ZNHIT1	10467	broad.mit.edu	37	chr7	100865743	100865743	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttggcccgggaggagacaAggggaccaagggcttggcaa	18	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100865743	T	T	100865743	1	4	188	0	1	0	0	0	0	0	0	0	18335	87	3	5		5	ZNHIT1	7	100865743	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	50419	100865743	58272920	471	149949											
MYL10	93408	broad.mit.edu	37	chr7	101257078	101257078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgatgaggggcaagtggGggcagggggacatcctggac	22	6	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101257078	T	T	101257078	1	4	188	0	1	0	0	0	0	0	0	0	10138	1247	43	2		2	MYL10	7	101257078	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	391335	101257078	57881585	472	149950											
SLC26A5	375611	broad.mit.edu	37	chr7	103051719	103051719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcatagttgtgaatatggCatgcagttggtctgcagtta	11	6	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103051719	A	A	103051719	1	1	188	0	1	0	0	0	0	0	0	0	14634	725	25	3		3	SLC26A5	7	103051719	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1794641	103051719	56086944	473	149951											
RELN	5649	broad.mit.edu	37	chr7	103180617	103180617	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctcaagtgacgacaattAaaatagttaatcctgaaggg	9	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103180617	G	G	103180617	1	3	188	0	1	0	0	0	0	0	0	0	13328	377	13	5		5	RELN	7	103180617	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	128898	103180617	55958046	474	149952											
RELN	5649	broad.mit.edu	37	chr7	103215939	103215939	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaataacatgaaacacagCaactagagatgactatttta	7	6	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103215939	A	A	103215939	1	1	188	0	1	0	0	0	0	0	0	0	13328	725	25	3		3	RELN	7	103215939	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	35322	103215939	55922724	475	149953											
RELN	5649	broad.mit.edu	37	chr7	103234901	103234902	+	Missense_Mutation	DNP	GG	TT	TT													accagcggaacctggtgcaaGgggtcttggcagcagctgga							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	103234902	TT	TT	103234901	3	4	188	1	0	0	0	0	1	0	0	0	13328	1000	35	2	6964	2	RELN	7	103234901	Missense_Mutation	DNP	GG	TCGA-64-5775-01A-01D-1625-08	18962	103234901	55903762	476	149954											
RELN	5649	broad.mit.edu	37	chr7	103292158	103292158	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgggggaggtggggtccAgcacagatctcaggtaagca	17	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103292158	T	T	103292158	2	4	188	1	0	0	0	0	0	0	0	1	13328	175	7	5		5	RELN	7	103292158	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	57257	103292158	55846505	477	149955											
RELN	5649	broad.mit.edu	37	chr7	103292171	103292171	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggtccagcacagatctcaGgtaagcattcagtgtgaagg	14	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103292171	C	C	103292171	3	2	188	1	0	0	0	0	1	0	0	0	13328	1000	35	4	8757	4	RELN	7	103292171	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	13	103292171	55846492	478	149956											
RELN	5649	broad.mit.edu	37	chr7	103322703	103322703	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttcccatctgactgacaGctatgctgtaggtgaaaaga	11	8	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103322703	T	T	103322703	3	4	188	1	0	0	0	0	1	0	0	0	13328	962	34	3	9453	3	RELN	7	103322703	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	30532	103322703	55815960	479	149957											
ORC5L	5001	broad.mit.edu	37	chr7	103838232	103838232	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccatatctcttagatactCtgctttatctagaaccttta	3	10	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103838232	A	A	103838232	4	1	188	1	0	0	0	0	0	1	0	0	11359	922	32	3	1067	3	ORC5L	7	103838232	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	515529	103838232	55300431	480	149958											
LAMB4	22798	broad.mit.edu	37	chr7	107696229	107696229	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttttatcttccatgttAgcagccagtctcattaaccc	4	13	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107696229	G	G	107696229	2	3	188	1	0	0	0	0	0	0	0	1	8685	407	15	5		5	LAMB4	7	107696229	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	3857997	107696229	51442434	481	149959											
THAP5	168451	broad.mit.edu	37	chr7	108205269	108205269	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctctacctgtatcttggTtaactgatgtttccaaggta	7	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108205269	A	A	108205269	3	1	188	1	0	0	0	0	1	0	0	0	15970	1725	60	5	637	5	THAP5	7	108205269	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	509040	108205269	50933394	482	149960											
CAV1	857	broad.mit.edu	37	chr7	116166561	116166561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccgtcctggccgtccGccctccgccctctgcaggga	10	22	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116166561	T	T	116166561	1	4	188	0	1	0	0	0	0	0	0	0	2719	1102	38	3		3	CAV1	7	116166561	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	7961292	116166561	42972102	483	149961											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432001	117432001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagcttgcgagttctgagGagctatgcctggtgtttgag	16	6	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117432001	T	T	117432001	3	4	188	1	0	0	0	0	1	0	0	0	4079	1174	41	3	3822	3	CTTNBP2	7	117432001	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1265440	117432001	41706662	484	149962											
WNT16	51384	broad.mit.edu	37	chr7	120969480	120969481	+	Intron	INS	-	A	A													ggaagcatcgggtaggtggcINSaaaaggggtgcccaatccta							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120969481	A	A	120969480	6	5	188	0	1	1	1	0	0	0	0	0	17512	725	25	0		0	WNT16	7	120969480	Intron	INS	-	TCGA-64-5775-01A-01D-1625-08	3537479	120969480	38169183	485	149963											
SPAM1	6677	broad.mit.edu	37	chr7	123594981	123594981	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagcatgcttagcttttGcgttgctgtcctatgtatag	11	8	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123594981	A	A	123594981	1	1	188	0	1	0	0	0	0	0	0	0	15102	1334	46	4		4	SPAM1	7	123594981	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2625501	123594981	35543682	486	149964											
GPR37	2861	broad.mit.edu	37	chr7	124404849	124404849	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagaacgtctcttgcagaaTttcccggtccccaggcgtcc	10	15	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124404849	A	A	124404849	3	1	188	1	0	0	0	0	1	0	0	0	6756	1493	52	5	1667	5	GPR37	7	124404849	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	809868	124404849	34733814	487	149965											
CPA4	51200	broad.mit.edu	37	chr7	129946600	129946600	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccatcctgccatgggataGctgacaagcatattgtctct	9	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129946600	A	A	129946600	1	1	188	0	1	0	0	0	0	0	0	0	3824	986	34	4		4	CPA4	7	129946600	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	5541751	129946600	29192063	488	149966											
PLXNA4	91584	broad.mit.edu	37	chr7	131815199	131815199	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagactgaggcacggcttGgtgtgtccccctccagggcg	14	13	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131815199	A	A	131815199	1	1	188	0	1	0	0	0	0	0	0	0	12217	1363	47	4		4	PLXNA4	7	131815199	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	1868599	131815199	27323464	489	149967											
PLXNA4	91584	broad.mit.edu	37	chr7	131815315	131815315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccacactggtcatcgtGgtccagaggtccaaggatct	10	13	2	1	rs150228337	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131815315	T	T	131815315	3	4	188	1	0	0	0	0	1	0	0	0	12217	1348	47	2	80	2	PLXNA4	7	131815315	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	116	131815315	27323348	490	149968											
LRGUK	136332	broad.mit.edu	37	chr7	133881855	133881855	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgtattcatatggaaataGaagtaagtgttttcattcaa	8	4	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133881855	T	T	133881855	4	4	188	1	0	0	0	0	0	1	0	0	9030	943	33	3	1593	3	LRGUK	7	133881855	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2066540	133881855	25256808	491	149969											
CALD1	800	broad.mit.edu	37	chr7	134644834	134644834	+	Frame_Shift_Del	DEL	C	-	-													gaaagggaatgtgttttcatCccccactgcagcaggcacac							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134644834	-	-	134644834	7	5	188	1	0	1	0	1	0	0	0	0	2607	855	30	0	2266	0	CALD1	7	134644834	Frame_Shift_Del	DEL	C	TCGA-64-5775-01A-01D-1625-08	762979	134644834	24493829	492	149970											
CHRM2	1129	broad.mit.edu	37	chr7	136623213	136623213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgctccttcccctggatGcgcacggcctggatgttggg	13	13	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136623213	T	T	136623213	1	4	188	0	1	0	0	0	0	0	0	0	3408	1334	46	3		3	CHRM2	7	136623213	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1978379	136623213	22515450	493	149971											
PTN	5764	broad.mit.edu	37	chr7	136912613	136912613	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatagtatacatttaaaaaaCgctactacaaaaattttctt	2	6	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136912613	T	T	136912613	1	4	188	0	1	0	0	0	0	0	0	0	12874	551	19	4		4	PTN	7	136912613	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	289400	136912613	22226050	494	149972											
DGKI	9162	broad.mit.edu	37	chr7	137263069	137263069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaatttctctggatttgCttctgtgaaagaggaaaagt	11	4	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137263069	A	A	137263069	3	1	188	1	0	0	0	0	1	0	0	0	4511	797	28	3	1628	3	DGKI	7	137263069	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	350456	137263069	21875594	495	149973											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138424421	138424421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaacaatgatcaaccgGggcagaaaagatactataat	7	7	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138424421	T	T	138424421	1	4	188	0	1	0	0	0	0	0	0	0	1174	1247	43	2		2	ATP6V0A4	7	138424421	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1161352	138424421	20714242	496	149974											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138764850	138764850	+	Frame_Shift_Del	DEL	G	-	-													tccagggaagccctgtggctGatctgatctggactaggtgt							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138764850	-	-	138764850	7	5	188	1	0	1	0	1	0	0	0	0	17701	1280	45	0	1915	0	ZC3HAV1	7	138764850	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	340429	138764850	20373813	497	149975											
UBN2	254048	broad.mit.edu	37	chr7	138954050	138954050	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatcatgaaaagataaaatGagaacaagaactggctttgc	8	5	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138954050	T	T	138954050	1	4	188	0	1	0	0	0	0	0	0	0	17019	1305	45	3		3	UBN2	7	138954050	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	189200	138954050	20184613	498	149976											
OR9A4	130075	broad.mit.edu	37	chr7	141619191	141619191	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacttactgcaaatcaaaTgtggtgaacaattttttttg	6	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141619191	C	C	141619191	2	2	188	1	0	0	0	0	0	0	0	1	11343	1461	51	5		5	OR9A4	7	141619191	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	2665141	141619191	17519472	499	149977											
TMEM139	135932	broad.mit.edu	37	chr7	142983428	142983428	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaggggtcagaggccaacAgaggatcttttgcccacagc	14	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142983428	C	C	142983428	1	2	188	0	1	0	0	0	0	0	0	0	16177	203	7	5		5	TMEM139	7	142983428	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1364237	142983428	16155235	500	149978											
FAM131B	9715	broad.mit.edu	37	chr7	143054044	143054044	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttcccaggcatctgacgAccccagacagtacataccct	8	16	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143054044	G	G	143054044	3	3	188	1	0	0	0	0	1	0	0	0	5486	275	10	5	404	5	FAM131B	7	143054044	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	70616	143054044	16084619	501	149979											
FAM131B	9715	broad.mit.edu	37	chr7	143057165	143057165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgatggaggctgctcccgtGcagtgagctggtgctgtcca	15	12	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143057165	T	T	143057165	3	4	188	1	0	0	0	0	1	0	0	0	5486	1319	46	3	1000	3	FAM131B	7	143057165	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	3121	143057165	16081498	502	149980											
TPK1	27010	broad.mit.edu	37	chr7	144380094	144380094	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaaatagaaagaacaaaatCatttcaatacaggaggcaca	6	7	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144380094	T	T	144380094	1	4	188	0	1	0	0	0	0	0	0	0	16528	841	29	4		4	TPK1	7	144380094	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1322929	144380094	14758569	503	149981											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471307	146471307	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttaaccaacacataccaatCgttatttcgaaatcgttgtt	4	9	0	0	rs116479521	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146471307	G	G	146471307	1	3	188	0	1	0	0	0	0	0	0	0	3679	899	31	4		4	CNTNAP2	7	146471307	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2091213	146471307	12667356	504	149982											
AGAP3	116988	broad.mit.edu	37	chr7	150839674	150839674	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctcgccaacagcgtctgGgagggggccttgggtggcta	17	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150839674	C	C	150839674	3	2	188	1	0	0	0	0	1	0	0	0	369	1241	43	4	2355	4	AGAP3	7	150839674	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4368367	150839674	8298989	505	149983											
LMBR1	64327	broad.mit.edu	37	chr7	156549004	156549004	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacaagattcagagaggttTatattttttctcttcaatta	6	6	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156549004	A	A	156549004	1	1	188	0	1	0	0	0	0	0	0	0	8914	1769	61	5		5	LMBR1	7	156549004	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	5709330	156549004	2589659	506	149984											
CSMD1	64478	broad.mit.edu	37	chr8	3265713	3265713	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taatttggtgacagaataatCccagatgatgccgtaaagtt	9	6	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3265713	T	T	3265713	2	4	188	1	0	0	0	0	0	0	0	1	3978	842	30	4		4	CSMD1	8	3265713	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08		3265713	143098309	507	149985											
SPAG11A	653423	broad.mit.edu	37	chr8	7718286	7718286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgatccctggaatagGtgttgcgtatcaaatacaga	10	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7718286	T	T	7718286	3	4	188	1	0	0	0	0	1	0	0	0	15092	1276	44	3		3	SPAG11A	8	7718286	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4452573	7718286	138645736	508	149986											
RP1L1	94137	broad.mit.edu	37	chr8	10480505	10480505	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagagaggcacgcgctgGgagagctcgtccatgagggc	18	9	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10480505	T	T	10480505	2	4	188	1	0	0	0	0	0	0	0	1	13644	1219	43	2		2	RP1L1	8	10480505	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2762219	10480505	135883517	509	149987											
NAT1	9	broad.mit.edu	37	chr8	18079724	18079725	+	Frame_Shift_Ins	INS	-	G	G													taggcttagaggccatttttINSgatcaagttgtgagaagaaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18079725	G	G	18079724	7	5	188	1	0	1	1	0	0	0	0	0	10267	1809	63	0	364	0	NAT1	8	18079724	Frame_Shift_Ins	INS	-	TCGA-64-5775-01A-01D-1625-08	7599219	18079724	128284298	510	149988											
PIWIL2	55124	broad.mit.edu	37	chr8	22163412	22163412	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcctcttgtactgccttAttttccctcttcgttctctc	5	14	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22163412	G	G	22163412	1	3	188	0	1	0	0	0	0	0	0	0	12053	464	16	5		5	PIWIL2	8	22163412	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	4083688	22163412	124200610	511	149989											
SLC39A14	23516	broad.mit.edu	37	chr8	22273519	22273520	+	Intron	DNP	GG	TT	TT													gcctctaagaggttgactcaGgcttaccttgagggcacatg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22273520	TT	TT	22273519	1	4	188	0	1	0	0	0	0	0	0	0	14731	1015	35	2		2	SLC39A14	8	22273519	Intron	DNP	GG	TCGA-64-5775-01A-01D-1625-08	110107	22273519	124090503	512	149990											
DOCK5	80005	broad.mit.edu	37	chr8	25266492	25266492	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccttatagtctttttactAgggaatggagtatgtttatg	9	4	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25266492	G	G	25266492	1	3	188	0	1	0	0	0	0	0	0	0	4730	435	15	5		5	DOCK5	8	25266492	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	2992973	25266492	121097530	513	149991											
EPHX2	2053	broad.mit.edu	37	chr8	27364421	27364421	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgacatcggggctaatctGaagccagcccgtgacttggg	14	10	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27364421	T	T	27364421	2	4	188	1	0	0	0	0	0	0	0	1	5222	1277	45	3		3	EPHX2	8	27364421	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2097929	27364421	118999601	514	149992											
KCNU1	157855	broad.mit.edu	37	chr8	36793073	36793073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatgagttcaagctgctgCcttcagatcttgtgttttgt	9	9	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36793073	A	A	36793073	3	1	188	1	0	0	0	0	1	0	0	0	8163	739	26	3	3191	3	KCNU1	8	36793073	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	9428652	36793073	109570949	515	149993											
FGFR1	2260	broad.mit.edu	37	chr8	38274924	38274924	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtctgacaagtctttctcTgttgcgtccgctttaaagaa	9	9	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38274924	C	C	38274924	2	2	188	1	0	0	0	0	0	0	0	1	5920	1567	55	5		5	FGFR1	8	38274924	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	1481851	38274924	108089098	516	149994											
PLEKHA2	59339	broad.mit.edu	37	chr8	38810931	38810931	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taatccaaacctccatttgtCctcttaaatctccctttact	1	14	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38810931	A	A	38810931	1	1	188	0	1	0	0	0	0	0	0	0	12151	870	30	3		3	PLEKHA2	8	38810931	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	536007	38810931	107553091	517	149995											
CLVS1	157807	broad.mit.edu	37	chr8	62212569	62212569	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagtcagggacatgatcatCaccaggcctgacattggatt	10	10	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62212569	G	G	62212569	3	3	188	1	0	0	0	0	1	0	0	0	3603	816	29	4	185	4	CLVS1	8	62212569	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	23401638	62212569	84151453	518	149996											
CLVS1	157807	broad.mit.edu	37	chr8	62366900	62366900	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctctcctttcccccctttTtctctctttctctctttatc	0	18	5	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62366900	G	G	62366900	1	3	188	0	1	0	0	0	0	0	0	0	3603	1856	64	5		5	CLVS1	8	62366900	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	154331	62366900	83997122	519	149997											
DNAJC5B	85479	broad.mit.edu	37	chr8	66992626	66992626	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctaggccctgtttgtcatCgttggcctcttgacgggctg	12	13	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66992626	A	A	66992626	2	1	188	1	0	0	0	0	0	0	0	1	4691	874	31	3		3	DNAJC5B	8	66992626	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	4625726	66992626	79371396	520	149998											
MYBL1	4603	broad.mit.edu	37	chr8	67509761	67509761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagaccatctttttggccCatatttctgaactaattcaa	4	9	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67509761	A	A	67509761	3	1	188	1	0	0	0	0	1	0	0	0	10103	594	21	2	1990	2	MYBL1	8	67509761	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	517135	67509761	78854261	521	149999											
ARFGEF1	10565	broad.mit.edu	37	chr8	68111060	68111060	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaagcatctttaccagtaaCtcagacactgcaatccagag	6	12	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68111060	G	G	68111060	1	3	188	0	1	0	0	0	0	0	0	0	854	580	20	4		4	ARFGEF1	8	68111060	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	601299	68111060	78252962	522	150000											
TRPA1	8989	broad.mit.edu	37	chr8	72973731	72973731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgatccacagggtctttGttatctttgcccttttcctt	8	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72973731	T	T	72973731	1	4	188	0	1	0	0	0	0	0	0	0	16702	1392	48	3		3	TRPA1	8	72973731	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	4862671	72973731	73390291	523	150001											
PI15	51050	broad.mit.edu	37	chr8	75761495	75761495	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggtttaaataagtttacCttttcctccaggaaatataa	5	7	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75761495	A	A	75761495	1	1	188	0	1	0	0	0	0	0	0	0	11963	696	24	2		2	PI15	8	75761495	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	2787764	75761495	70602527	524	150002											
ZFHX4	79776	broad.mit.edu	37	chr8	77768253	77768253	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttctccaaacagcacatTtcaaaagtgagggagaccgt	8	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77768253	A	A	77768253	2	1	188	1	0	0	0	0	0	0	0	1	17761	1829	64	5		5	ZFHX4	8	77768253	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	2006758	77768253	68595769	525	150003											
PSKH2	85481	broad.mit.edu	37	chr8	87081723	87081723	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagccacctgtatcctctgCgccgcctgggccgccgcctc	11	20	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87081723	A	A	87081723	2	1	188	1	0	0	0	0	0	0	0	1	12771	755	27	3		3	PSKH2	8	87081723	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	9313470	87081723	59282299	526	150004											
SLC7A13	157724	broad.mit.edu	37	chr8	87242304	87242305	+	Missense_Mutation	DNP	GC	AG	AG													ggaagcttatacttatctctGcagagcaaagagttgatgtc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	87242305	AG	AG	87242304	3	1	188	1	0	0	0	0	1	0	0	0	14809	1319	46	4	1225	4	SLC7A13	8	87242304	Missense_Mutation	DNP	GC	TCGA-64-5775-01A-01D-1625-08	160581	87242304	59121718	527	150005											
NBN	4683	broad.mit.edu	37	chr8	90949303	90949303	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcatgttgattttgtaCctgtcaaaattaacataatt	5	5	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90949303	G	G	90949303	3	3	188	1	0	0	0	0	1	0	0	0	10285	521	18	4	87	4	NBN	8	90949303	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3706999	90949303	55414719	528	150006											
CDH17	1015	broad.mit.edu	37	chr8	95188636	95188636	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atagagatagtgaaacaactCccaaatcagtgtgaaatgta	8	6	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95188636	A	A	95188636	1	1	188	0	1	0	0	0	0	0	0	0	3132	870	30	3		3	CDH17	8	95188636	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4239333	95188636	51175386	529	150007											
OSR2	116039	broad.mit.edu	37	chr8	99961564	99961564	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggtggctgccacgcaagaGgatccgcctaagatgggaga	16	10	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99961564	C	C	99961564	3	2	188	1	0	0	0	0	1	0	0	0	11388	991	35	4	386	4	OSR2	8	99961564	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4772928	99961564	46402458	530	150008											
NCALD	83988	broad.mit.edu	37	chr8	102731843	102731843	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctccgggcgcagcttgctGttctgtttccccatcctggc	10	16	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102731843	A	A	102731843	2	1	188	1	0	0	0	0	0	0	0	1	10296	1368	48	4		4	NCALD	8	102731843	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2770279	102731843	43632179	531	150009											
RIMS2	9699	broad.mit.edu	37	chr8	104897708	104897708	+	Frame_Shift_Del	DEL	G	-	-													ctctgatcatttaagttataGggactccaacaggagaagtc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104897708	-	-	104897708	7	5	188	1	0	1	0	1	0	0	0	0	13479	1000	35	0	1021	0	RIMS2	8	104897708	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	2165865	104897708	41466314	532	150010											
RIMS2	9699	broad.mit.edu	37	chr8	105010354	105010355	+	Intron	INS	-	T	T													ctttttaaattaaactatacINSttttttttcacttctttctt							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105010355	T	T	105010354	6	5	188	0	1	1	1	0	0	0	0	0	13479	580	20	0		0	RIMS2	8	105010354	Intron	INS	-	TCGA-64-5775-01A-01D-1625-08	112646	105010354	41353668	533	150011											
RIMS2	9699	broad.mit.edu	37	chr8	105235886	105235886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctcgtccaagatgggcCggcagggcttggggggtgcc	19	11	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105235886	A	A	105235886	1	1	188	0	1	0	0	0	0	0	0	0	13479	667	23	1		1	RIMS2	8	105235886	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	225532	105235886	41128136	534	150012											
LRP12	29967	broad.mit.edu	37	chr8	105503136	105503136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacatcaaagtctgaagatCcatcagaaattggaattagc	7	8	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105503136	A	A	105503136	3	1	188	1	0	0	0	0	1	0	0	0	9041	855	30	3	238	3	LRP12	8	105503136	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	267250	105503136	40860886	535	150013											
PKHD1L1	93035	broad.mit.edu	37	chr8	110445572	110445572	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtattacaattatcatgatCcctatggggtcatgaaattg	8	6	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110445572	A	A	110445572	1	1	188	0	1	0	0	0	0	0	0	0	12067	870	30	3		3	PKHD1L1	8	110445572	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4942436	110445572	35918450	536	150014											
CSMD3	114788	broad.mit.edu	37	chr8	113249654	113249654	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaaatagagtattagttTattgaataatgatgtattgc	7	2	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113249654	C	C	113249654	1	2	188	0	1	0	0	0	0	0	0	0	3980	1769	61	5		5	CSMD3	8	113249654	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2804082	113249654	33114368	537	150015											
CSMD3	114788	broad.mit.edu	37	chr8	113299337	113299337	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaactgccattagctaaaCatgttctttcttctgagcca	5	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113299337	G	G	113299337	3	3	188	1	0	0	0	0	1	0	0	0	3980	478	17	4	1892	4	CSMD3	8	113299337	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	49683	113299337	33064685	538	150016											
CSMD3	114788	broad.mit.edu	37	chr8	113347651	113347651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtagactgattccaaagCggtattgccactgaactgac	9	10	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113347651	A	A	113347651	3	1	188	1	0	0	0	0	1	0	0	0	3980	768	27	3	4159	3	CSMD3	8	113347651	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	48314	113347651	33016371	539	150017											
CSMD3	114788	broad.mit.edu	37	chr8	113668326	113668326	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccattagtaaaactataatAatacaaaaagtagggcaaac	5	6	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113668326	T	T	113668326	1	4	188	0	1	0	0	0	0	0	0	0	3980	377	13	5		5	CSMD3	8	113668326	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	320675	113668326	32695696	540	150018											
COL14A1	7373	broad.mit.edu	37	chr8	121228707	121228707	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgaattgtatataacaatgCagatgggactgaaatcaatg	9	5	1	2	rs150549316		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121228707	G	G	121228707	3	3	188	1	0	0	0	0	1	0	0	0	3703	710	25	4	1765	4	COL14A1	8	121228707	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	7560381	121228707	25135315	541	150019											
MTBP	27085	broad.mit.edu	37	chr8	121457858	121457858	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggatgagaaagagcgggaaCggcttgtggagaggggaaga	21	3	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121457858	T	T	121457858	1	4	188	0	1	0	0	0	0	0	0	0	10006	551	19	4		4	MTBP	8	121457858	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	229151	121457858	24906164	542	150020											
ATAD2	29028	broad.mit.edu	37	chr8	124408447	124408447	+	Frame_Shift_Del	DEL	C	-	-													gcccgctttggctgtggtcgCcgcgggtttcttctgcgccg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124408447	-	-	124408447	7	5	188	1	0	1	0	1	0	0	0	0	1075	739	26	0	4133	0	ATAD2	8	124408447	Frame_Shift_Del	DEL	C	TCGA-64-5775-01A-01D-1625-08	2950589	124408447	21955575	543	150021											
TG	7038	broad.mit.edu	37	chr8	133945830	133945830	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagaggacgaggcctgcaGcttcttcaccgtgtccacga	11	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133945830	A	A	133945830	3	1	188	1	0	0	0	0	1	0	0	0	15936	971	34	4	4935	4	TG	8	133945830	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	9537383	133945830	12418192	544	150022											
SLA	6503	broad.mit.edu	37	chr8	134050794	134050794	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcaaagtaaggtggtgatGagaagaatgagctctttctc	11	7	3	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134050794	T	T	134050794	4	4	188	1	0	0	0	0	0	1	0	0	14476	1294	45	3	28	3	SLA	8	134050794	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	104964	134050794	12313228	545	150023											
COL22A1	169044	broad.mit.edu	37	chr8	139788254	139788254	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcgttctccttggagaccCtgggggacaaagaaagagca	12	11	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139788254	G	G	139788254	5	3	188	1	0	0	0	0	0	0	1	0	3713	695	24	4	3322	4	COL22A1	8	139788254	Splice_Site	SNP	C	TCGA-64-5775-01A-01D-1625-08	5737460	139788254	6575768	546	150024											
COL22A1	169044	broad.mit.edu	37	chr8	139833736	139833736	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaaacgggagttcagagtCagacctggcaatcctgagtc	14	9	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139833736	A	A	139833736	1	1	188	0	1	0	0	0	0	0	0	0	3713	841	29	3		3	COL22A1	8	139833736	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	45482	139833736	6530286	547	150025											
LYNX1	66004	broad.mit.edu	37	chr8	143851159	143851159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcaggaggtggccccaGcccctggactcacccagctg	13	15	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143851159	A	A	143851159	1	1	188	0	1	0	0	0	0	0	0	0	9196	986	34	4		4	LYNX1	8	143851159	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	4017423	143851159	2512863	548	150026											
OPLAH	26873	broad.mit.edu	37	chr8	145113021	145113021	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaagacgtgctcgaattccCcagcatagcggctcacatcc	9	15	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145113021	T	T	145113021	3	4	188	1	0	0	0	0	1	0	0	0	10970	623	22	4	2968	4	OPLAH	8	145113021	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1261862	145113021	1251001	549	150027											
CPSF1	29894	broad.mit.edu	37	chr8	145634558	145634558	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatggcgccaacccgggcTgcgcaaggccgggagaggaa	16	12	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145634558	A	A	145634558	5	1	188	1	0	0	0	0	0	0	1	0	3856	1594	55	5		5	CPSF1	8	145634558	Splice_Site	SNP	T	TCGA-64-5775-01A-01D-1625-08	521537	145634558	729464	550	150028											
CDC37L1	55664	broad.mit.edu	37	chr9	4706108	4706109	+	Frame_Shift_Del	DEL	TA	-	-													acccaaaatgatggacactgTataatttggttaagactgct							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4706109	-	-	4706108	7	5	188	1	0	1	0	1	0	0	0	0	3099	1638	57	0	1036	0	CDC37L1	9	4706108	Frame_Shift_Del	DEL	TA	TCGA-64-5775-01A-01D-1625-08		4706108	136507323	551	150029											
JAK2	3717	broad.mit.edu	37	chr9	5126557	5126557	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcttccagataaacagcAtaatcagatgactgtggaac	10	8	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5126557	C	C	5126557	1	2	188	0	1	0	0	0	0	0	0	0	8008	232	8	5		5	JAK2	9	5126557	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	420449	5126557	136086874	552	150030											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18776906	18776906	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctacctgctccccaagacGgcggtggtgctgcgctgccc	13	17	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18776906	T	T	18776906	2	4	188	1	0	0	0	0	0	0	0	1	274	1103	39	1		1	ADAMTSL1	9	18776906	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	13650349	18776906	122436525	553	150031											
ARID3C	138715	broad.mit.edu	37	chr9	34622213	34622213	+	Intron	DEL	C	-	-													cagcccccattccacttcagCcccacacctatactcacaca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34622213	-	-	34622213	6	5	188	0	1	1	0	1	0	0	0	0	920	754	26	0		0	ARID3C	9	34622213	Intron	DEL	C	TCGA-64-5775-01A-01D-1625-08	15845307	34622213	106591218	554	150032											
CNTNAP3	79937	broad.mit.edu	37	chr9	39178481	39178481	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacattgtatttctaagccaTtcattgaaggaaacaactga	6	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39178481	C	C	39178481	1	2	188	0	1	0	0	0	0	0	0	0	3680	1508	52	5		5	CNTNAP3	9	39178481	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4556268	39178481	102034950	555	150033											
FAM75A3	727830	broad.mit.edu	37	chr9	40702629	40702629	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccggctcctggctgcagCtcgtgcctcctgtctcctgc	10	19	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40702629	G	G	40702629	1	3	188	0	1	0	0	0	0	0	0	0	5672	812	28	4		4	FAM75A3	9	40702629	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1524148	40702629	100510802	556	150034											
TMC1	117531	broad.mit.edu	37	chr9	75357402	75357402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgagaacttcaaagctGcgtgtgtcccatgggaaaat	10	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75357402	T	T	75357402	3	4	188	1	0	0	0	0	1	0	0	0	16107	1319	46	3	518	3	TMC1	9	75357402	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	34654773	75357402	65856029	557	150035											
TRPM6	140803	broad.mit.edu	37	chr9	77377235	77377235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaatgcccagtttacatatCcacctccagtttgcatgatc	5	12	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77377235	A	A	77377235	3	1	188	1	0	0	0	0	1	0	0	0	16715	855	30	3	1772	3	TRPM6	9	77377235	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2019833	77377235	63836196	558	150036											
PCSK5	5125	broad.mit.edu	37	chr9	78803463	78803463	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttggcctcatcacaacagtCtgtttgaagctccctttata	6	11	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78803463	G	G	78803463	1	3	188	0	1	0	0	0	0	0	0	0	11697	928	32	4		4	PCSK5	9	78803463	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1426228	78803463	62409968	559	150037											
PRUNE2	158471	broad.mit.edu	37	chr9	79321559	79321559	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatagtgtgtttccacgggCtcaatatcaccctgaactgg	10	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79321559	A	A	79321559	3	1	188	1	0	0	0	0	1	0	0	0	12747	796	28	3	3683	3	PRUNE2	9	79321559	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	518096	79321559	61891872	560	150038											
PRUNE2	158471	broad.mit.edu	37	chr9	79323135	79323135	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttttcagaaatccctgagGcattctccacaccagaggcg	8	13	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79323135	C	C	79323135	3	2	188	1	0	0	0	0	1	0	0	0	12747	1203	42	4	5259	4	PRUNE2	9	79323135	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1576	79323135	61890296	561	150039											
AGTPBP1	23287	broad.mit.edu	37	chr9	88292465	88292465	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatatttgtgaaccaccttTggtgactaagaaactcactc	6	10	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88292465	A	A	88292465	4	1	188	1	0	0	0	0	0	1	0	0	400	1821	63	5	3322	5	AGTPBP1	9	88292465	Nonsense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	8969330	88292465	52920966	562	150040											
DAPK1	1612	broad.mit.edu	37	chr9	90255686	90255686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttgctgctatggtcacaGcattttttttcttctccccc	5	12	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90255686	A	A	90255686	1	1	188	0	1	0	0	0	0	0	0	0	4268	986	34	4		4	DAPK1	9	90255686	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1963221	90255686	50957745	563	150041											
S1PR3	1903	broad.mit.edu	37	chr9	91616117	91616117	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtctgtgaatgccaagtgaTggcaactgccctcccgccgc	11	15	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91616117	A	A	91616117	3	1	188	1	0	0	0	0	1	0	0	0	13906	1464	51	5	4	5	S1PR3	9	91616117	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1360431	91616117	49597314	564	150042											
SEMA4D	10507	broad.mit.edu	37	chr9	91995896	91995896	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacacacacaaatgccacaGaactgaagcaccgtgaaatg	7	11	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91995896	A	A	91995896	1	1	188	0	1	0	0	0	0	0	0	0	14147	957	33	4		4	SEMA4D	9	91995896	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	379779	91995896	49217535	565	150043											
ZNF484	83744	broad.mit.edu	37	chr9	95609812	95609812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacttccggataaaggcCttcccacattcagtacatac	7	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95609812	A	A	95609812	3	1	188	1	0	0	0	0	1	0	0	0	18064	680	24	2	1305	2	ZNF484	9	95609812	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3613916	95609812	45603619	566	150044											
FAM120A	23196	broad.mit.edu	37	chr9	96259736	96259737	+	Intron	INS	-	A	A													accatccactgttgacacttINSacgtttgttttctcaggtcc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96259737	A	A	96259736	6	5	188	0	1	1	1	0	0	0	0	0	5461	1769	61	0		0	FAM120A	9	96259736	Intron	INS	-	TCGA-64-5775-01A-01D-1625-08	649924	96259736	44953695	567	150045											
PHF2	5253	broad.mit.edu	37	chr9	96438917	96438917	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagagtgccaagaggaaGctgactcctaacaccacctc	8	12	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96438917	T	T	96438917	3	4	188	1	0	0	0	0	1	0	0	0	11925	962	34	3	2956	3	PHF2	9	96438917	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	179181	96438917	44774514	568	150046											
COL15A1	1306	broad.mit.edu	37	chr9	101748161	101748161	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcggatcatcctctactacAcggagccaggctcccatgtg	10	14	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101748161	T	T	101748161	3	4	188	1	0	0	0	0	1	0	0	0	3704	159	6	5	425	5	COL15A1	9	101748161	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	5309244	101748161	39465270	569	150047											
MURC	347273	broad.mit.edu	37	chr9	103348395	103348395	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggctgagacagtcagggGagaggtttaagaaatctatt	14	4	2	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103348395	T	T	103348395	4	4	188	1	0	0	0	0	0	1	0	0	10081	1175	41	3	763	3	MURC	9	103348395	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1600234	103348395	37865036	570	150048											
KIAA0368	23392	broad.mit.edu	37	chr9	114156013	114156013	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgaatttctttaagatgaGactgaaagaagaaaaaaggc	9	3	1	6			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114156013	T	T	114156013	3	4	188	1	0	0	0	0	1	0	0	0	8241	956	33	3	2691	3	KIAA0368	9	114156013	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	10807618	114156013	27057418	571	150049											
COL27A1	85301	broad.mit.edu	37	chr9	117063930	117063930	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatgaagaccctgtggacCagggctcactcttcttctct	10	12	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117063930	T	T	117063930	1	4	188	0	1	0	0	0	0	0	0	0	3717	609	21	4		4	COL27A1	9	117063930	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2907917	117063930	24149501	572	150050											
AKNA	80709	broad.mit.edu	37	chr9	117118346	117118346	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgggaatcagagaaccccTggccttggggtaggaagctc	14	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117118346	A	A	117118346	3	1	188	1	0	0	0	0	1	0	0	0	463	1579	55	5	1438	5	AKNA	9	117118346	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	54416	117118346	24095085	573	150051											
ASTN2	23245	broad.mit.edu	37	chr9	119487964	119487964	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtggcagagccaggatttaGatccaaggcagctcagttgt	13	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119487964	T	T	119487964	1	4	188	0	1	0	0	0	0	0	0	0	1069	957	33	3		3	ASTN2	9	119487964	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2369618	119487964	21725467	574	150052											
ASTN2	23245	broad.mit.edu	37	chr9	119583094	119583095	+	Intron	DNP	GG	TT	TT													gagggcaacagggtagttatGgcttgggaggttgtaggccc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	119583095	TT	TT	119583094	1	4	188	0	1	0	0	0	0	0	0	0	1069	1363	47	2		2	ASTN2	9	119583094	Intron	DNP	GG	TCGA-64-5775-01A-01D-1625-08	95130	119583094	21630337	575	150053											
ASTN2	23245	broad.mit.edu	37	chr9	119976615	119976615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgccccctggaaaatgGgctgtgacatggaggactca	12	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119976615	T	T	119976615	1	4	188	0	1	0	0	0	0	0	0	0	1069	1247	43	2		2	ASTN2	9	119976615	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	393521	119976615	21236816	576	150054											
TLR4	7099	broad.mit.edu	37	chr9	120470782	120470782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaccatctctggtctaggAgaggggagttgggagaccat	14	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120470782	G	G	120470782	1	3	188	0	1	0	0	0	0	0	0	0	16076	319	11	5		5	TLR4	9	120470782	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	494167	120470782	20742649	577	150055											
DBC1	1620	broad.mit.edu	37	chr9	121976387	121976387	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatatagctcaaggccgaCtggacaaacttctcttgcag	9	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121976387	A	A	121976387	3	1	188	1	0	0	0	0	1	0	0	0	4280	564	20	3	1565	3	DBC1	9	121976387	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1505605	121976387	19237044	578	150056											
TTLL11	158135	broad.mit.edu	37	chr9	124801637	124801637	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacaaggcaagcgccggCcaaatgggaactagaagaga	13	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124801637	A	A	124801637	3	1	188	1	0	0	0	0	1	0	0	0	16850	739	26	3	1769	3	TTLL11	9	124801637	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2825250	124801637	16411794	579	150057											
OR1J4	26219	broad.mit.edu	37	chr9	125282291	125282291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaatcccttcatttataGcctaaggaacagggacataa	8	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125282291	T	T	125282291	3	4	188	1	0	0	0	0	1	0	0	0	11055	971	34	3	874	3	OR1J4	9	125282291	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	480654	125282291	15931140	580	150058											
RC3H2	54542	broad.mit.edu	37	chr9	125645412	125645412	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgctagggcctctagactGggtaacatgaatttcaggaa	11	7	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125645412	A	A	125645412	1	1	188	0	1	0	0	0	0	0	0	0	13275	1363	47	4		4	RC3H2	9	125645412	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	363121	125645412	15568019	581	150059											
C9orf119	375757	broad.mit.edu	37	chr9	131050816	131050816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacaagtgtggggactggcTtgaagccagaggtggtcctg	17	8	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131050816	C	C	131050816	1	2	188	0	1	0	0	0	0	0	0	0	2478	1624	56	5		5	C9orf119	9	131050816	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	5405404	131050816	10162615	582	150060											
GLE1	2733	broad.mit.edu	37	chr9	131289841	131289841	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaacatgacctttcatttCattgtattatctttcagact	5	8	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131289841	A	A	131289841	1	1	188	0	1	0	0	0	0	0	0	0	6499	841	29	3		3	GLE1	9	131289841	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	239025	131289841	9923590	583	150061											
NUP188	23511	broad.mit.edu	37	chr9	131742868	131742868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgaagatcagtgatttGtccccttccaccacaggagc	9	11	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131742868	T	T	131742868	1	4	188	0	1	0	0	0	0	0	0	0	10853	1392	48	3		3	NUP188	9	131742868	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	453027	131742868	9470563	584	150062											
PRDM12	59335	broad.mit.edu	37	chr9	133542010	133542010	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcagaagtgcagaagctgtCcagcctggtgctgcctgcgg	15	12	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133542010	G	G	133542010	3	3	188	1	0	0	0	0	1	0	0	0	12559	855	30	4	245	4	PRDM12	9	133542010	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1799142	133542010	7671421	585	150063											
TSC1	7248	broad.mit.edu	37	chr9	135781222	135781222	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttacaaggactgggagtGaagatactggtctccaaaga	11	6	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135781222	A	A	135781222	2	1	188	1	0	0	0	0	0	0	0	1	16730	1281	45	4		4	TSC1	9	135781222	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2239212	135781222	5432209	586	150064											
CEL	1056	broad.mit.edu	37	chr9	135946252	135946252	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agccagtgcccagtatgcagTgaggggcatggtgcccaggg	17	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135946252	C	C	135946252	1	2	188	0	1	0	0	0	0	0	0	0	3239	1711	59	5		5	CEL	9	135946252	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	165030	135946252	5267179	587	150065											
COL5A1	1289	broad.mit.edu	37	chr9	137697099	137697099	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcctctttcttgaatcCtactctccaggtcagaaggg	7	14	4	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137697099	A	A	137697099	1	1	188	0	1	0	0	0	0	0	0	0	3728	696	24	2		2	COL5A1	9	137697099	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1750847	137697099	3516332	588	150066											
FCN1	2219	broad.mit.edu	37	chr9	137804534	137804534	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caccggggacccgccctccaGaggagcagcatttgtagttg	13	13	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137804534	T	T	137804534	1	4	188	0	1	0	0	0	0	0	0	0	5848	957	33	3		3	FCN1	9	137804534	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	107435	137804534	3408897	589	150067											
QSOX2	169714	broad.mit.edu	37	chr9	139107123	139107123	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgacatccaacccactttaTgtgattagtaaggaatattc	6	8	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139107123	C	C	139107123	3	2	188	1	0	0	0	0	1	0	0	0	12992	1464	51	5	871	5	QSOX2	9	139107123	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1302589	139107123	2106308	590	150068											
CACNA1B	774	broad.mit.edu	37	chr9	140938207	140938207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactacaccccttactcggGggccctgtgtccttgtaggt	11	14	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140938207	T	T	140938207	1	4	188	0	1	0	0	0	0	0	0	0	2565	1247	43	2		2	CACNA1B	9	140938207	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1831084	140938207	275224	591	150069											
ASB13	79754	broad.mit.edu	37	chr10	5693045	5693045	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaggagccagaaacagactCagaactctccttcaccagcc	7	16	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5693045	A	A	5693045	1	1	188	0	1	0	0	0	0	0	0	0	1021	841	29	3		3	ASB13	10	5693045	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08		5693045	129841702	592	150070											
ITIH2	3698	broad.mit.edu	37	chr10	7759473	7759473	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtacctactgttcactttcaTgaactactgagcagaacgga	8	10	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7759473	G	G	7759473	1	3	188	0	1	0	0	0	0	0	0	0	7974	1479	51	5		5	ITIH2	10	7759473	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2066428	7759473	127775274	593	150071											
ITIH2	3698	broad.mit.edu	37	chr10	7786303	7786303	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acacgactgcataaataaatCcaggcatcagtgacatcaac	6	11	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7786303	G	G	7786303	1	3	188	0	1	0	0	0	0	0	0	0	7974	870	30	4		4	ITIH2	10	7786303	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	26830	7786303	127748444	594	150072											
ITGA8	8516	broad.mit.edu	37	chr10	15599982	15599982	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagcactgaaggagaccaaGaacaatccttgaagttaaaa	9	7	0	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15599982	T	T	15599982	1	4	188	0	1	0	0	0	0	0	0	0	7952	957	33	3		3	ITGA8	10	15599982	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	7813679	15599982	119934765	595	150073											
ITGA8	8516	broad.mit.edu	37	chr10	15648243	15648243	+	Intron	DEL	C	-	-													gagaacaacaccccagagagCttgcttgagaaaatgccgtc					rs2282383	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15648243	-	-	15648243	6	5	188	0	1	1	0	1	0	0	0	0	7952	812	28	0		0	ITGA8	10	15648243	Intron	DEL	C	TCGA-64-5775-01A-01D-1625-08	48261	15648243	119886504	596	150074											
CACNB2	783	broad.mit.edu	37	chr10	18550971	18550971	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccttttgcgagcagctacTctattttcaggaagggttgt	10	9	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18550971	C	C	18550971	1	2	188	0	1	0	0	0	0	0	0	0	2579	1566	54	5		5	CACNB2	10	18550971	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2902728	18550971	116983776	597	150075											
PLXDC2	84898	broad.mit.edu	37	chr10	20335730	20335730	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatactcttgagttcaatagGattttttttaaagaattgta	6	3	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20335730	A	A	20335730	1	1	188	0	1	0	0	0	0	0	0	0	12213	1189	41	4		4	PLXDC2	10	20335730	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1784759	20335730	115199017	598	150076											
MYO3A	53904	broad.mit.edu	37	chr10	26436361	26436361	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcatactgtatcaacaggtCctctataatgcaagtggatt	8	8	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26436361	T	T	26436361	2	4	188	1	0	0	0	0	0	0	0	1	10170	842	30	4		4	MYO3A	10	26436361	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	6100631	26436361	109098386	599	150077											
ZEB1	6935	broad.mit.edu	37	chr10	31650305	31650305	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatttttgtattttcagtAgagacggagtttcaccatgt	8	6	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31650305	G	G	31650305	1	3	188	0	1	0	0	0	0	0	0	0	17749	435	15	5		5	ZEB1	10	31650305	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	5213944	31650305	103884442	600	150078											
ANKRD30A	91074	broad.mit.edu	37	chr10	37451731	37451731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaatgcaaaagtctgtcCcaaataaagccttggaattg	8	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37451731	A	A	37451731	3	1	188	1	0	0	0	0	1	0	0	0	658	623	22	2	1855	2	ANKRD30A	10	37451731	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	5801426	37451731	98083016	601	150079											
ANKRD30A	91074	broad.mit.edu	37	chr10	37454033	37454033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttatagatgagatactcCcatcagaatccaaacaaaag	5	9	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37454033	A	A	37454033	3	1	188	1	0	0	0	0	1	0	0	0	658	623	22	2	1916	2	ANKRD30A	10	37454033	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2302	37454033	98080714	602	150080											
ANKRD30A	91074	broad.mit.edu	37	chr10	37506811	37506811	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtaatttgaatcaggtaaAtcaatctctgataaaaattt	5	4	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37506811	T	T	37506811	1	4	188	0	1	0	0	0	0	0	0	0	658	116	4	5		5	ANKRD30A	10	37506811	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	52778	37506811	98027936	603	150081											
ZNF248	57209	broad.mit.edu	37	chr10	38127072	38127072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctttttacatgaaatggTcagaactagatgatacagaa	7	6	2	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38127072	A	A	38127072	1	1	188	0	1	0	0	0	0	0	0	0	17919	1682	58	5		5	ZNF248	10	38127072	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	620261	38127072	97407675	604	150082											
RET	5979	broad.mit.edu	37	chr10	43606965	43606965	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctgggggcttctggagCctgggcctcctgccctttga	15	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43606965	T	T	43606965	1	4	188	0	1	0	0	0	0	0	0	0	13343	754	26	4		4	RET	10	43606965	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5479893	43606965	91927782	605	150083											
ZNF485	220992	broad.mit.edu	37	chr10	44112653	44112653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatcactgtaagaaatgtGggaaagcctttcggcacagc	10	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44112653	T	T	44112653	3	4	188	1	0	0	0	0	1	0	0	0	18065	1348	47	2	1176	2	ZNF485	10	44112653	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	505688	44112653	91422094	606	150084											
OR13A1	79290	broad.mit.edu	37	chr10	45799823	45799823	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactcatcatccttgggctGggacgggtttctgggactat	12	9	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45799823	A	A	45799823	2	1	188	1	0	0	0	0	0	0	0	1	11027	1335	47	4		4	OR13A1	10	45799823	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1687170	45799823	89734924	607	150085											
FRMPD2	143162	broad.mit.edu	37	chr10	49444423	49444423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaactgaatgccactgGggtgttcccatgtgagaccc	14	10	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49444423	T	T	49444423	1	4	188	0	1	0	0	0	0	0	0	0	6118	1247	43	2		2	FRMPD2	10	49444423	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3644600	49444423	86090324	608	150086											
A1CF	29974	broad.mit.edu	37	chr10	52580456	52580456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaacaaaattaagagagcCttgaaagtgatatattttag	7	3	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52580456	A	A	52580456	1	1	188	0	1	0	0	0	0	0	0	0	2	696	24	2		2	A1CF	10	52580456	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3136033	52580456	82954291	609	150087											
PCDH15	65217	broad.mit.edu	37	chr10	55581535	55581535	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggggtaaaataatagagtCttctttgacgttcaaatttg	9	4	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55581535	A	A	55581535	1	1	188	0	1	0	0	0	0	0	0	0	11605	928	32	3		3	PCDH15	10	55581535	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	3001079	55581535	79953212	610	150088											
PCDH15	65217	broad.mit.edu	37	chr10	56106127	56106127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaataggtatttacataccgGatcatctggattatactgaa	7	6	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56106127	T	T	56106127	3	4	188	1	0	0	0	0	1	0	0	0	11605	1174	41	3	7031	3	PCDH15	10	56106127	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	524592	56106127	79428620	611	150089											
ANK3	288	broad.mit.edu	37	chr10	61965482	61965482	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtccctggagatggcccTggggctctggctgctaaggc	16	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61965482	C	C	61965482	1	2	188	0	1	0	0	0	0	0	0	0	622	1595	55	5		5	ANK3	10	61965482	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	5859355	61965482	73569265	612	150090											
HERC4	26091	broad.mit.edu	37	chr10	69716515	69716515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatgcagcagtcttctttaTagctacccaaagtactttgt	6	10	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69716515	C	C	69716515	1	2	188	0	1	0	0	0	0	0	0	0	7127	1421	49	5		5	HERC4	10	69716515	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	7751033	69716515	65818232	613	150091											
C10orf27	219793	broad.mit.edu	37	chr10	72539529	72539529	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaggctgtgggaagggaGgcttaggtggaccttaagag	18	4	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72539529	T	T	72539529	1	4	188	0	1	0	0	0	0	0	0	0	1611	1015	35	2		2	C10orf27	10	72539529	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2823014	72539529	62995218	614	150092											
CDH23	64072	broad.mit.edu	37	chr10	73572631	73572631	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagctgggccagatcattcGtgaggggccaatcaaggtga	14	9	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73572631	A	A	73572631	3	1	188	1	0	0	0	0	1	0	0	0	3138	1145	40	4	10303	4	CDH23	10	73572631	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1033102	73572631	61962116	615	150093											
USP54	159195	broad.mit.edu	37	chr10	75302898	75302898	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggaggttttcctgacaggGaaagaacaaaagcagtatac	11	7	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75302898	A	A	75302898	1	1	188	0	1	0	0	0	0	0	0	0	17212	1189	41	4		4	USP54	10	75302898	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1730267	75302898	60231849	616	150094											
KCNMA1	3778	broad.mit.edu	37	chr10	78846232	78846232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaataaaagcagaagtcacCtcttcctccttaccttgact	6	12	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78846232	A	A	78846232	1	1	188	0	1	0	0	0	0	0	0	0	8143	696	24	2		2	KCNMA1	10	78846232	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3543334	78846232	56688515	617	150095											
SFTPA2	729238	broad.mit.edu	37	chr10	81317230	81317230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattccttgggacagcaatgCggccgcctgctctggcacat	12	13	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81317230	A	A	81317230	3	1	188	1	0	0	0	0	1	0	0	0	14303	768	27	3	268	3	SFTPA2	10	81317230	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2470998	81317230	54217517	618	150096											
SFTPA2	729238	broad.mit.edu	37	chr10	81319205	81319205	+	Frame_Shift_Del	DEL	A	-	-													cagcaccagaggctgccatcAagatgagggtgagggccaga					rs72659394		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81319205	-	-	81319205	7	5	188	1	0	1	0	1	0	0	0	0	14303	131	5	0	727	0	SFTPA2	10	81319205	Frame_Shift_Del	DEL	A	TCGA-64-5775-01A-01D-1625-08	1975	81319205	54215542	619	150097											
SFTPA1	653509	broad.mit.edu	37	chr10	81371615	81371615	+	Frame_Shift_Del	DEL	T	-	-													ctctggccctcaacctcatcTtgatggcagcctctggtgct							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81371615	-	-	81371615	7	5	188	1	0	1	0	1	0	0	0	0	14302	1606	56	0	85	0	SFTPA1	10	81371615	Frame_Shift_Del	DEL	T	TCGA-64-5775-01A-01D-1625-08	52410	81371615	54163132	620	150098											
GRID1	2894	broad.mit.edu	37	chr10	87407290	87407290	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcttcattccccatcccCcaaagttcaagtccttcagc	3	17	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87407290	A	A	87407290	1	1	188	0	1	0	0	0	0	0	0	0	6837	638	22	2		2	GRID1	10	87407290	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	6035675	87407290	48127457	621	150099											
LDB3	11155	broad.mit.edu	37	chr10	88469826	88469826	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaagaggcagagcaggaGgggaggctgtcgaaagccat	18	6	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88469826	A	A	88469826	1	1	188	0	1	0	0	0	0	0	0	0	8769	1015	35	4		4	LDB3	10	88469826	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1062536	88469826	47064921	622	150100											
MMRN2	79812	broad.mit.edu	37	chr10	88702973	88702973	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtccagctgccgccgctcgTccaggctcacctgggtctcc	11	19	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88702973	C	C	88702973	3	2	188	1	0	0	0	0	1	0	0	0	9765	1667	58	5	1289	5	MMRN2	10	88702973	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	233147	88702973	46831774	623	150101											
STAMBPL1	57559	broad.mit.edu	37	chr10	90670738	90670738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccttttaaagaaatataaCgtagaataccaagaatattt	5	5	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90670738	T	T	90670738	2	4	188	1	0	0	0	0	0	0	0	1	15369	535	19	4		4	STAMBPL1	10	90670738	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1967765	90670738	44864009	624	150102											
RPP30	10556	broad.mit.edu	37	chr10	92645477	92645477	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcaaaacacctatggagtGaaccatactttatatcgagt	6	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92645477	T	T	92645477	1	4	188	0	1	0	0	0	0	0	0	0	13723	1305	45	3		3	RPP30	10	92645477	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1974739	92645477	42889270	625	150103											
ANKRD1	27063	broad.mit.edu	37	chr10	92678728	92678728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcacatccacaggttccGtctaaagccaaaataaataa	6	10	1	0	rs142354133		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92678728	T	T	92678728	3	4	188	1	0	0	0	0	1	0	0	0	637	1159	40	3	636	3	ANKRD1	10	92678728	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	33251	92678728	42856019	626	150104											
PCGF5	84333	broad.mit.edu	37	chr10	93031310	93031310	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatgttgactcttgtgtttGacgttaaactattttaaata	6	5	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93031310	T	T	93031310	1	4	188	0	1	0	0	0	0	0	0	0	11671	1305	45	3		3	PCGF5	10	93031310	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	352582	93031310	42503437	627	150105											
LGI1	9211	broad.mit.edu	37	chr10	95557473	95557473	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcattcacacatgtgtcCattaataagcgtaattttct	5	8	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95557473	T	T	95557473	2	4	188	1	0	0	0	0	0	0	0	1	8823	581	21	4		4	LGI1	10	95557473	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	2526163	95557473	39977274	628	150106											
DNTT	1791	broad.mit.edu	37	chr10	98087045	98087045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaaagaaccactgttacCctgaaaaattcacaaccagg	6	11	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98087045	A	A	98087045	1	1	188	0	1	0	0	0	0	0	0	0	4720	638	22	2		2	DNTT	10	98087045	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2529572	98087045	37447702	629	150107											
SLIT1	6585	broad.mit.edu	37	chr10	98778737	98778737	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccggcctctgcctccactCaccttatagccgctggggca	9	19	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98778737	A	A	98778737	1	1	188	0	1	0	0	0	0	0	0	0	14853	841	29	3		3	SLIT1	10	98778737	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	691692	98778737	36756010	630	150108											
UBTD1	80019	broad.mit.edu	37	chr10	99327986	99327986	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggagtgtggagcggtgGggcaggtggttactcacgta	19	5	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99327986	T	T	99327986	1	4	188	0	1	0	0	0	0	0	0	0	17033	1247	43	2		2	UBTD1	10	99327986	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	549249	99327986	36206761	631	150109											
HPSE2	60495	broad.mit.edu	37	chr10	100773234	100773234	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattattatgattatgattAttattattatttgagataca	4	1	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100773234	T	T	100773234	1	4	188	0	1	0	0	0	0	0	0	0	7412	464	16	5		5	HPSE2	10	100773234	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1445248	100773234	34761513	632	150110											
CHUK	1147	broad.mit.edu	37	chr10	101978830	101978830	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atacattcaaataccatggtCccaaagctccaataatcaac	3	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101978830	A	A	101978830	2	1	188	1	0	0	0	0	0	0	0	1	3447	842	30	3		3	CHUK	10	101978830	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1205596	101978830	33555917	633	150111											
TLX1	3195	broad.mit.edu	37	chr10	102894055	102894055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacctggcctcggccgagcGcgccgccctggccaaggcgc	15	18	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102894055	T	T	102894055	3	4	188	1	0	0	0	0	1	0	0	0	16082	1087	38	3	698	3	TLX1	10	102894055	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	915225	102894055	32640692	634	150112											
TAF5	6877	broad.mit.edu	37	chr10	105145020	105145020	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtattcaaatgtatatAaaactgggcaggtgaccaaa	8	5	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105145020	C	C	105145020	1	2	188	0	1	0	0	0	0	0	0	0	15647	377	13	5		5	TAF5	10	105145020	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	2250965	105145020	30389727	635	150113											
C10orf79	80217	broad.mit.edu	37	chr10	105901940	105901940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggaagggagatggctGtaaagcagtcagtaggcatt	16	5	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105901940	T	T	105901940	1	4	188	0	1	0	0	0	0	0	0	0	1629	1392	48	3		3	C10orf79	10	105901940	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	756920	105901940	29632807	636	150114											
SORCS3	22986	broad.mit.edu	37	chr10	106849635	106849635	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caggctaggcccagggagatCtgcctgcaggtctctgtcct	13	13	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106849635	G	G	106849635	1	3	188	0	1	0	0	0	0	0	0	0	15046	928	32	4		4	SORCS3	10	106849635	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	947695	106849635	28685112	637	150115											
SORCS1	114815	broad.mit.edu	37	chr10	108339034	108339034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatattaatagaaaccatcaCtgctatgcacatcactgtaa	4	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108339034	A	A	108339034	1	1	188	0	1	0	0	0	0	0	0	0	15044	580	20	3		3	SORCS1	10	108339034	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1489399	108339034	27195713	638	150116											
SORCS1	114815	broad.mit.edu	37	chr10	108437228	108437228	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atacccaggcttcagagaatCagtcttcacatgagaacaaa	7	10	4	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108437228	A	A	108437228	1	1	188	0	1	0	0	0	0	0	0	0	15044	841	29	3		3	SORCS1	10	108437228	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	98194	108437228	27097519	639	150117											
ATRNL1	26033	broad.mit.edu	37	chr10	117704162	117704162	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaaatgcttttctctttcCttccaggccttgcaattgcc	5	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117704162	T	T	117704162	1	4	188	0	1	0	0	0	0	0	0	0	1211	696	24	4		4	ATRNL1	10	117704162	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	9266934	117704162	17830585	640	150118											
PNLIP	5406	broad.mit.edu	37	chr10	118305811	118305811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtacatggagtagggttGtcagaaaacatctaagatgc	12	6	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118305811	T	T	118305811	1	4	188	0	1	0	0	0	0	0	0	0	12244	1392	48	3		3	PNLIP	10	118305811	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	601649	118305811	17228936	641	150119											
EIF3A	8661	broad.mit.edu	37	chr10	120802195	120802195	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggtctaagagagggctctCtatcttcatcatcccccaga	8	13	5	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120802195	G	G	120802195	3	3	188	1	0	0	0	0	1	0	0	0	5052	913	32	4	1327	4	EIF3A	10	120802195	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2496384	120802195	14732552	642	150120											
EIF3A	8661	broad.mit.edu	37	chr10	120816388	120816388	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgacacgaaaacacacgTagttttaaaaaatctctctt	5	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120816388	C	C	120816388	1	2	188	0	1	0	0	0	0	0	0	0	5052	1653	57	5		5	EIF3A	10	120816388	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	14193	120816388	14718359	643	150121											
INPP5F	22876	broad.mit.edu	37	chr10	121541344	121541344	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgtaatagcaaatatgagGatttggttcagtagaccaga	10	4	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121541344	T	T	121541344	1	4	188	0	1	0	0	0	0	0	0	0	7828	1189	41	3		3	INPP5F	10	121541344	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	724956	121541344	13993403	644	150122											
FGFR2	2263	broad.mit.edu	37	chr10	123274543	123274543	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatggaagctcacagaagTcgatggcatcaaagcagagg	12	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123274543	G	G	123274543	1	3	188	0	1	0	0	0	0	0	0	0	5923	1682	58	5		5	FGFR2	10	123274543	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	1733199	123274543	12260204	645	150123											
C10orf137	26098	broad.mit.edu	37	chr10	127441455	127441455	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacgcattccagcttatccAgaaggagcttatagaagaat	9	9	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127441455	G	G	127441455	3	3	188	1	0	0	0	0	1	0	0	0	1605	188	7	5	3349	5	C10orf137	10	127441455	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	4166912	127441455	8093292	646	150124											
EBF3	253738	broad.mit.edu	37	chr10	131666055	131666055	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgggcttacctcgctccaCaccaacatagttccgaatac	7	16	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131666055	T	T	131666055	2	4	188	1	0	0	0	0	0	0	0	1	4922	465	17	4		4	EBF3	10	131666055	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	4224600	131666055	3868692	647	150125											
EBF3	253738	broad.mit.edu	37	chr10	131757298	131757298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggacaagcagaggctggGgttacgcggcgcccgcggct	19	11	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131757298	T	T	131757298	1	4	188	0	1	0	0	0	0	0	0	0	4922	1247	43	2		2	EBF3	10	131757298	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	91243	131757298	3777449	648	150126											
TCERG1L	256536	broad.mit.edu	37	chr10	132944642	132944642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attactaaactctgcaatcgGgcacaggattccttaatagt	7	9	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132944642	T	T	132944642	1	4	188	0	1	0	0	0	0	0	0	0	15808	1247	43	2		2	TCERG1L	10	132944642	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1187344	132944642	2590105	649	150127											
GPR123	84435	broad.mit.edu	37	chr10	134898647	134898647	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aattctgtctttctcaccacGagactcttcatggacttacg	6	12	5	1	rs116043533	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134898647	T	T	134898647	1	4	188	0	1	0	0	0	0	0	0	0	6702	1073	37	3		3	GPR123	10	134898647	5'Flank	SNP	G	TCGA-64-5775-01A-01D-1625-08	1954005	134898647	636100	650	150128											
CYP2E1	1571	broad.mit.edu	37	chr10	135352302	135352302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaaacgagtgtgtgctgGagaaggcctggctcgcatgg	17	7	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135352302	T	T	135352302	3	4	188	1	0	0	0	0	1	0	0	0	4203	1174	41	3	1350	3	CYP2E1	10	135352302	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	453655	135352302	182445	651	150129											
MUC6	4588	broad.mit.edu	37	chr11	1017340	1017340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggataggtagtggtggtctGgaaggatgttgcagtgacag	18	3	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1017340	T	T	1017340	3	4	188	1	0	0	0	0	1	0	0	0	10074	1357	47	2	1870	2	MUC6	11	1017340	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08		1017340	133989176	652	150130											
MUC6	4588	broad.mit.edu	37	chr11	1018123	1018123	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtggctgagttggtgtGggccacaggggttctggtgc	20	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1018123	T	T	1018123	3	4	188	1	0	0	0	0	1	0	0	0	10074	1348	47	2	2653	2	MUC6	11	1018123	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	783	1018123	133988393	653	150131											
BRSK2	9024	broad.mit.edu	37	chr11	1464734	1464734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcagggggctctgcccttcGacgatgacaacttgcgacag	13	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1464734	T	T	1464734	3	4	188	1	0	0	0	0	1	0	0	0	1533	1058	37	3	679	3	BRSK2	11	1464734	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	446611	1464734	133541782	654	150132											
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651688	1651688	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagccctgtagctgcttctcAggctgtggatcatcctgctg	11	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1651688	T	T	1651688	2	4	188	1	0	0	0	0	0	0	0	1	8636	175	7	5		5	KRTAP5-5	11	1651688	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	186954	1651688	133354828	655	150133											
ART1	417	broad.mit.edu	37	chr11	3685429	3685429	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctcctttgatgcatgagaCacgggacagcctcgcctgct	11	14	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3685429	G	G	3685429	1	3	188	0	1	0	0	0	0	0	0	0	1001	493	17	4		4	ART1	11	3685429	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	2033741	3685429	131321087	656	150134											
OR51E1	143503	broad.mit.edu	37	chr11	4674333	4674333	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtcatgaagctggcctgtGatgatatccgggtcaatgtc	12	8	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4674333	T	T	4674333	3	4	188	1	0	0	0	0	1	0	0	0	11188	1290	45	3	579	3	OR51E1	11	4674333	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	988904	4674333	130332183	657	150135											
OR56A5	390084	broad.mit.edu	37	chr11	5989509	5989509	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaggcagagtacgatgtcCagcagggagaggaggctgag	19	6	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5989509	A	A	5989509	2	1	188	1	0	0	0	0	0	0	0	1	11230	581	21	2		2	OR56A5	11	5989509	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1315176	5989509	129017007	658	150136											
FAM160A2	84067	broad.mit.edu	37	chr11	6244992	6244992	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagaaaagagaagaagacGgggagcggctccaggctcag	17	8	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6244992	A	A	6244992	3	1	188	1	0	0	0	0	1	0	0	0	5515	1116	39	4	2375	4	FAM160A2	11	6244992	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	255483	6244992	128761524	659	150137											
IPO7	10527	broad.mit.edu	37	chr11	9466809	9466809	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctcctagtagtggttccaGaactggttcatgttatctat	8	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9466809	T	T	9466809	1	4	188	0	1	0	0	0	0	0	0	0	7867	957	33	3		3	IPO7	11	9466809	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	3221817	9466809	125539707	660	150138											
GALNTL4	374378	broad.mit.edu	37	chr11	11348537	11348537	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagctgccatgacagagcCtagctctccttccccatgac	8	16	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11348537	A	A	11348537	1	1	188	0	1	0	0	0	0	0	0	0	6285	696	24	2		2	GALNTL4	11	11348537	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1881728	11348537	123657979	661	150139											
USH1C	10083	broad.mit.edu	37	chr11	17552622	17552622	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgaccatgttgtgccaCacagcctagtggatgaatga	13	8	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17552622	T	T	17552622	1	4	188	0	1	0	0	0	0	0	0	0	17160	493	17	4		4	USH1C	11	17552622	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	6204085	17552622	117453894	662	150140											
KCNC1	3746	broad.mit.edu	37	chr11	17794029	17794029	+	Missense_Mutation	SNP	C	A	A													aaagaagcatattccgcggcCaccgcagctgggatctccca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17794029	A	A	17794029	3	1	188	1	0	0	0	0	1	0	0	0	8084	594	21	2	1394	2	KCNC1	11	17794029	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	241407	17794029	117212487	663	150141	649	2									
KCNC1	3746	broad.mit.edu	37	chr11	17794031	17794031	+	Missense_Mutation	SNP	C	T	T													agaagcatattccgcggccaCcgcagctgggatctcccaat							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17794031	T	T	17794031	3	4	188	1	0	0	0	0	1	0	0	0	8084	507	18	4	1396	4	KCNC1	11	17794031	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2	17794031	117212485	664	150142	649	2									
LUZP2	338645	broad.mit.edu	37	chr11	24750854	24750854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagatgagaactcattttcCgagcagtaaaagaggagcag	12	6	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24750854	A	A	24750854	1	1	188	0	1	0	0	0	0	0	0	0	9174	667	23	1		1	LUZP2	11	24750854	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	6956823	24750854	110255662	665	150143											
ANO3	63982	broad.mit.edu	37	chr11	26682071	26682071	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatgctaggtgaaatctagGaggaaggcatacttggcaaa	13	5	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26682071	T	T	26682071	1	4	188	0	1	0	0	0	0	0	0	0	698	1189	41	3		3	ANO3	11	26682071	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	1931217	26682071	108324445	666	150144											
WT1	7490	broad.mit.edu	37	chr11	32414272	32414272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaaaaccttcgttcacagtCcttgaagtcacactggtatg	8	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32414272	A	A	32414272	3	1	188	1	0	0	0	0	1	0	0	0	17535	855	30	3	286	3	WT1	11	32414272	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	5732201	32414272	102592244	667	150145											
C11orf41	25758	broad.mit.edu	37	chr11	33573608	33573608	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgttaaatccaaggaactGagacatggagctttagtgag	11	6	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33573608	T	T	33573608	1	4	188	0	1	0	0	0	0	0	0	0	1652	1305	45	3		3	C11orf41	11	33573608	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1159336	33573608	101432908	668	150146											
CAPRIN1	4076	broad.mit.edu	37	chr11	34097814	34097814	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataaagaagacagcacgtcGggagcagcttatgagagaag	13	6	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34097814	C	C	34097814	3	2	188	1	0	0	0	0	1	0	0	0	2661	1116	39	4	412	4	CAPRIN1	11	34097814	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	524206	34097814	100908702	669	150147											
API5	8539	broad.mit.edu	37	chr11	43348161	43348161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttgatatacagttggaGgtaagcaaaaatttcagctt	10	5	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43348161	T	T	43348161	3	4	188	1	0	0	0	0	1	0	0	0	775	1014	35	2	881	2	API5	11	43348161	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	9250347	43348161	91658355	670	150148											
MTCH2	23788	broad.mit.edu	37	chr11	47653336	47653336	+	Intron	SNP	T	A	A													cctgtgagaaggaatgtgggTggatatcgtggtataggata							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47653336	A	A	47653336	1	1	188	0	1	0	0	0	0	0	0	0	10008	1711	59	5		5	MTCH2	11	47653336	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4305175	47653336	87353180	671	150149	650	2									
MTCH2	23788	broad.mit.edu	37	chr11	47653338	47653338	+	Intron	SNP	G	A	A													tgtgagaaggaatgtgggtgGatatcgtggtataggataag							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47653338	A	A	47653338	1	1	188	0	1	0	0	0	0	0	0	0	10008	1189	41	4		4	MTCH2	11	47653338	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2	47653338	87353178	672	150150	650	2									
OR4C46	119749	broad.mit.edu	37	chr11	51516152	51516152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctataccttgaagaatgccCagatgaaaaatgccatcagg	8	9	2	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51516152	A	A	51516152	3	1	188	1	0	0	0	0	1	0	0	0	11145	595	21	2	873	2	OR4C46	11	51516152	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3862814	51516152	83490364	673	150151											
TRIM48	79097	broad.mit.edu	37	chr11	55033009	55033010	+	Intron	DNP	CC	AA	AA													ctctcattctgggccccctcCcaatgaaacggtctgtatgt							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55033010	AA	AA	55033009	1	1	188	0	1	0	0	0	0	0	0	0	16648	638	22	2		2	TRIM48	11	55033009	Intron	DNP	CC	TCGA-64-5775-01A-01D-1625-08	3516857	55033009	79973507	674	150152											
OR4A15	81328	broad.mit.edu	37	chr11	55135976	55135976	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatgtcattgacaacttccTgtgtgatttgtatcccttat	6	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135976	A	A	55135976	3	1	188	1	0	0	0	0	1	0	0	0	11134	1580	55	5	619	5	OR4A15	11	55135976	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	102967	55135976	79870540	675	150153											
SPRYD5	84767	broad.mit.edu	37	chr11	55648558	55648558	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaccacctccccacttacaCtgcaatatatcccaagacct	2	17	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55648558	G	G	55648558	1	3	188	0	1	0	0	0	0	0	0	0	15229	580	20	4		4	SPRYD5	11	55648558	5'Flank	SNP	C	TCGA-64-5775-01A-01D-1625-08	512582	55648558	79357958	676	150154											
SPRYD5	84767	broad.mit.edu	37	chr11	55648707	55648707	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctcaggcctacctttcgGtgtattcacctctgaccaga	7	15	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55648707	T	T	55648707	1	4	188	0	1	0	0	0	0	0	0	0	15229	1276	44	3		3	SPRYD5	11	55648707	5'Flank	SNP	G	TCGA-64-5775-01A-01D-1625-08	149	55648707	79357809	677	150155											
OR9I1	219954	broad.mit.edu	37	chr11	57886584	57886584	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcactgccagcagaaagcaCtctgtgcctgcacagatggt	10	12	2	2	rs144479851		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57886584	T	T	57886584	2	4	188	1	0	0	0	0	0	0	0	1	11347	564	20	4		4	OR9I1	11	57886584	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	2237877	57886584	77119932	678	150156											
MS4A2	2206	broad.mit.edu	37	chr11	59857214	59857214	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccaggaagtatcttcaGgcagactattgaagtcggcc	10	12	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59857214	A	A	59857214	3	1	188	1	0	0	0	0	1	0	0	0	9954	1000	35	4	112	4	MS4A2	11	59857214	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1970630	59857214	75149302	679	150157											
CD6	923	broad.mit.edu	37	chr11	60776153	60776153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcaactgggctgcggctGggcagtccaggccctgcccg	16	15	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60776153	T	T	60776153	3	4	188	1	0	0	0	0	1	0	0	0	3058	1357	47	2	631	2	CD6	11	60776153	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	918939	60776153	74230363	680	150158											
VWCE	220001	broad.mit.edu	37	chr11	61040724	61040724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactgcccagggcccagcCgccactcttctcgggggcag	12	17	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61040724	A	A	61040724	3	1	188	1	0	0	0	0	1	0	0	0	17372	652	23	1	1253	1	VWCE	11	61040724	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	264571	61040724	73965792	681	150159											
DDB1	1642	broad.mit.edu	37	chr11	61077401	61077401	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaccagactgagggcataTtcattctgcagaaactggtg	11	8	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61077401	C	C	61077401	2	2	188	1	0	0	0	0	0	0	0	1	4356	1490	52	5		5	DDB1	11	61077401	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	36677	61077401	73929115	682	150160											
AHNAK	79026	broad.mit.edu	37	chr11	62293785	62293785	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagatcttgggggctttgaTattcatctctggcatcttga	12	7	4	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62293785	A	A	62293785	3	1	188	1	0	0	0	0	1	0	0	0	414	1406	49	5	9688	5	AHNAK	11	62293785	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1216384	62293785	72712731	683	150161											
PYGM	5837	broad.mit.edu	37	chr11	64514683	64514683	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgagtgattcccgggCcaaccagctcaccggtcatg	10	16	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64514683	A	A	64514683	1	1	188	0	1	0	0	0	0	0	0	0	12970	754	26	3		3	PYGM	11	64514683	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2220898	64514683	70491833	684	150162											
SYVN1	84447	broad.mit.edu	37	chr11	64897466	64897466	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagaacccagagagtggccCagcttaccaaagggtggagg	15	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64897466	G	G	64897466	1	3	188	0	1	0	0	0	0	0	0	0	15606	609	21	4		4	SYVN1	11	64897466	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	382783	64897466	70109050	685	150163											
CCDC87	55231	broad.mit.edu	37	chr11	66359007	66359007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatcaactccttgtagaCctccctggtagtactgccaa	7	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66359007	A	A	66359007	3	1	188	1	0	0	0	0	1	0	0	0	2890	507	18	3	1073	3	CCDC87	11	66359007	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1461541	66359007	68647509	686	150164											
RBM14	10432	broad.mit.edu	37	chr11	66392833	66392833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcggctgctgcggccactGgctcctatggtgccgcagca	14	14	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66392833	T	T	66392833	3	4	188	1	0	0	0	0	1	0	0	0	13223	1348	47	2	1492	2	RBM14	11	66392833	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	33826	66392833	68613683	687	150165											
MRGPRF	116535	broad.mit.edu	37	chr11	68773568	68773568	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggttcctcttgatggagaaGccgaaaaaccagaggaccag	13	9	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68773568	C	C	68773568	2	2	188	1	0	0	0	0	0	0	0	1	9859	958	34	4		4	MRGPRF	11	68773568	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2380735	68773568	66232948	688	150166											
CTTN	2017	broad.mit.edu	37	chr11	70267698	70267698	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagcaaggcacagttgccAccagcctcctaccctccccc	6	22	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70267698	T	T	70267698	1	4	188	0	1	0	0	0	0	0	0	0	4078	174	6	5		5	CTTN	11	70267698	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1494130	70267698	64738818	689	150167											
FOLR3	2352	broad.mit.edu	37	chr11	71850763	71850763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtcgagggagcggccgctGcatccagatgtggtttgact	15	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71850763	A	A	71850763	3	1	188	1	0	0	0	0	1	0	0	0	6041	1319	46	4	638	4	FOLR3	11	71850763	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1583065	71850763	63155753	690	150168											
ACER3	55331	broad.mit.edu	37	chr11	76709875	76709875	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgttacatggtaagtagtTtggatcatctgcaccatgac	9	7	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76709875	A	A	76709875	1	1	188	0	1	0	0	0	0	0	0	0	140	1856	64	5		5	ACER3	11	76709875	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4859112	76709875	58296641	691	150169											
DLG2	1740	broad.mit.edu	37	chr11	84732498	84732498	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgccatcctctcctgctAcagcagcccgggcatttctc	7	17	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84732498	G	G	84732498	1	3	188	0	1	0	0	0	0	0	0	0	4595	406	14	5		5	DLG2	11	84732498	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	8022623	84732498	50274018	692	150170											
CCDC83	220047	broad.mit.edu	37	chr11	85593700	85593700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaagtttgaaagagacCaggaaaaaaacttgagaggt	12	3	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85593700	A	A	85593700	3	1	188	1	0	0	0	0	1	0	0	0	2885	595	21	2	335	2	CCDC83	11	85593700	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	861202	85593700	49412816	693	150171											
CHORDC1	26973	broad.mit.edu	37	chr11	89944475	89944475	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaattccaaatttgtcattGgttcatctgggctggagaat	9	6	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89944475	C	C	89944475	3	2	188	1	0	0	0	0	1	0	0	0	3396	1348	47	4	685	4	CHORDC1	11	89944475	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4350775	89944475	45062041	694	150172											
MMP13	4322	broad.mit.edu	37	chr11	102819653	102819653	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacttggtctttaatttagGtatattttcagtagtgatca	7	4	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102819653	A	A	102819653	1	1	188	0	1	0	0	0	0	0	0	0	9745	1276	44	4		4	MMP13	11	102819653	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	12875178	102819653	32186863	695	150173											
ATM	472	broad.mit.edu	37	chr11	108137952	108137952	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtagaatcaatggaagatGatactaatggaaatctaatg	9	3	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108137952	T	T	108137952	3	4	188	1	0	0	0	0	1	0	0	0	1113	1290	45	3	2583	3	ATM	11	108137952	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	5318299	108137952	26868564	696	150174											
C11orf52	91894	broad.mit.edu	37	chr11	111796798	111796798	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacattatgctgacattcaaGtgtgcagccgtccccatgcc	8	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111796798	A	A	111796798	3	1	188	1	0	0	0	0	1	0	0	0	1659	1029	36	4	261	4	C11orf52	11	111796798	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	3658846	111796798	23209718	697	150175											
HTR3A	3359	broad.mit.edu	37	chr11	113853842	113853842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccccttttcccccgccagCgtggatgtggggaagtctcc	11	15	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113853842	A	A	113853842	3	1	188	1	0	0	0	0	1	0	0	0	7514	782	27	3	437	3	HTR3A	11	113853842	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2057044	113853842	21152674	698	150176											
MLL	4297	broad.mit.edu	37	chr11	118350864	118350864	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctaaatttaatttgtttCatggtttattcgttgttttc	5	5	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118350864	A	A	118350864	1	1	188	0	1	0	0	0	0	0	0	0	9713	841	29	3		3	MLL	11	118350864	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4497022	118350864	16655652	699	150177											
MLL	4297	broad.mit.edu	37	chr11	118390412	118390412	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtctggtgccaagcaCtgtcgaaattacaaattccg	9	11	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118390412	G	G	118390412	3	3	188	1	0	0	0	0	1	0	0	0	9713	564	20	4	11343	4	MLL	11	118390412	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	39548	118390412	16616104	700	150178											
HINFP	25988	broad.mit.edu	37	chr11	119005060	119005060	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatccacgtggtgaatcAgaccaatgcccaaggccagc	10	13	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119005060	T	T	119005060	3	4	188	1	0	0	0	0	1	0	0	0	7177	188	7	5	1440	5	HINFP	11	119005060	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	614648	119005060	16001456	701	150179											
BSX	390259	broad.mit.edu	37	chr11	122850161	122850161	+	Frame_Shift_Del	DEL	C	-	-													gggaacagcgctgggactggCatccctgcagagagaagagc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122850161	-	-	122850161	7	5	188	1	0	1	0	1	0	0	0	0	1544	710	25	0	441	0	BSX	11	122850161	Frame_Shift_Del	DEL	C	TCGA-64-5775-01A-01D-1625-08	3845101	122850161	12156355	702	150180											
OR10G9	219870	broad.mit.edu	37	chr11	123894507	123894507	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catttacctgagaccaggctCcagggacgtcgtggatggag	14	10	0	1	rs148745928		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123894507	T	T	123894507	3	4	188	1	0	0	0	0	1	0	0	0	10998	855	30	4	790	4	OR10G9	11	123894507	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1044346	123894507	11112009	703	150181											
KIRREL3	84623	broad.mit.edu	37	chr11	126305136	126305136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccttccccccttcccagGgccattctcatcatctcctt	4	20	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126305136	T	T	126305136	1	4	188	0	1	0	0	0	0	0	0	0	8397	1247	43	2		2	KIRREL3	11	126305136	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2410629	126305136	8701380	704	150182											
OPCML	4978	broad.mit.edu	37	chr11	132813063	132813064	+	5'Flank	DNP	GG	TT	TT													ccccgcgcaccagcgggctcGggaagcggtgcggggaggag							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	132813064	TT	TT	132813063	1	4	188	0	1	0	0	0	0	0	0	0	10968	1131	39	1		1	OPCML	11	132813063	5'Flank	DNP	GG	TCGA-64-5775-01A-01D-1625-08	6507927	132813063	2193453	705	150183											
GLB1L2	89944	broad.mit.edu	37	chr11	134239993	134239993	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttatctcctgtggaggacGggagaacgccctggctttcc	12	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134239993	T	T	134239993	1	4	188	0	1	0	0	0	0	0	0	0	6493	1131	39	1		1	GLB1L2	11	134239993	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1426930	134239993	766523	706	150184											
IQSEC3	440073	broad.mit.edu	37	chr12	250283	250283	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcttctccccacccccaCctccagaaaccccgacaagg	5	21	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	250283	T	T	250283	1	4	188	0	1	0	0	0	0	0	0	0	7889	522	18	4		4	IQSEC3	12	250283	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08		250283	133601612	707	150185											
ERC1	23085	broad.mit.edu	37	chr12	1399138	1399138	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcacttgactaatcttcggGcagagagaaggaaacactta	9	9	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1399138	C	C	1399138	3	2	188	1	0	0	0	0	1	0	0	0	5252	1203	42	4	2794	4	ERC1	12	1399138	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1148855	1399138	132452757	708	150186											
CACNA2D4	93589	broad.mit.edu	37	chr12	1994018	1994018	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcatgatggcctggttGcagaggcttccttgcttggc	14	9	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1994018	T	T	1994018	4	4	188	1	0	0	0	0	0	1	0	0	2577	1311	46	3	2337	3	CACNA2D4	12	1994018	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	594880	1994018	131857877	709	150187											
CACNA2D4	93589	broad.mit.edu	37	chr12	1994339	1994339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctgtttagggccatcCagaaggacatgatttcaggg	15	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1994339	A	A	1994339	1	1	188	0	1	0	0	0	0	0	0	0	2577	609	21	2		2	CACNA2D4	12	1994339	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	321	1994339	131857556	710	150188											
CACNA2D4	93589	broad.mit.edu	37	chr12	2017307	2017307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacgagagggccggggccGggcggccatcagagtctaca	18	11	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2017307	T	T	2017307	1	4	188	0	1	0	0	0	0	0	0	0	2577	1131	39	1		1	CACNA2D4	12	2017307	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	22968	2017307	131834588	711	150189											
CACNA1C	775	broad.mit.edu	37	chr12	2714818	2714818	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcatctcctgaagccacgtCcctctccccgtcccttccca	6	21	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2714818	A	A	2714818	1	1	188	0	1	0	0	0	0	0	0	0	2566	870	30	3		3	CACNA1C	12	2714818	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	697511	2714818	131137077	712	150190											
CACNA1C	775	broad.mit.edu	37	chr12	2794913	2794913	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttccaggctctcctaccAggatgacgaaaatcggcaac	9	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2794913	T	T	2794913	3	4	188	1	0	0	0	0	1	0	0	0	2566	188	7	5	6468	5	CACNA1C	12	2794913	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	80095	2794913	131056982	713	150191											
AKAP3	10566	broad.mit.edu	37	chr12	4736526	4736526	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgaatcatacataaaattCtcaggtttctctggaggata	7	7	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4736526	A	A	4736526	3	1	188	1	0	0	0	0	1	0	0	0	452	912	32	3	1027	3	AKAP3	12	4736526	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1941613	4736526	129115369	714	150192											
KCNA5	3741	broad.mit.edu	37	chr12	5154280	5154280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccaggaccctggccgacCccttcttcatcgtggagacc	10	17	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5154280	A	A	5154280	3	1	188	1	0	0	0	0	1	0	0	0	8076	623	22	2	969	2	KCNA5	12	5154280	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	417754	5154280	128697615	715	150193											
CLEC4A	50856	broad.mit.edu	37	chr12	8291015	8291015	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcaactattctacttatgaGagaattggtctgtacattga	8	6	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8291015	T	T	8291015	1	4	188	0	1	0	0	0	0	0	0	0	3544	957	33	3		3	CLEC4A	12	8291015	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	3136735	8291015	125560880	716	150194											
CLEC12A	160364	broad.mit.edu	37	chr12	10124339	10124339	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtataatagaagtggttaTagacttgcatcttcaatatt	7	4	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10124339	C	C	10124339	1	2	188	0	1	0	0	0	0	0	0	0	3529	1421	49	5		5	CLEC12A	12	10124339	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	1833324	10124339	123727556	717	150195											
GRIN2B	2904	broad.mit.edu	37	chr12	13906583	13906583	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacagtaaagaagaatgatGgggctttgaagtttcttgag	13	3	1	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13906583	T	T	13906583	2	4	188	1	0	0	0	0	0	0	0	1	6846	1335	47	2		2	GRIN2B	12	13906583	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	3782244	13906583	119945312	718	150196											
GUCY2C	2984	broad.mit.edu	37	chr12	14804340	14804340	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgaccatggtttcttaCccggagggatcctctctcac	9	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14804340	A	A	14804340	5	1	188	1	0	0	0	0	0	0	1	0	6961	521	18	3	1562	3	GUCY2C	12	14804340	Splice_Site	SNP	C	TCGA-64-5775-01A-01D-1625-08	897757	14804340	119047555	719	150197											
KRAS	3845	broad.mit.edu	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25380276	A	A	25380276	3	1	188	1	0	0	0	0	1	0	0	0	8509	1812	63	5	520	5	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	10575936	25380276	108471619	720	150198											
OVCH1	341350	broad.mit.edu	37	chr12	29617627	29617627	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcactattatgtgtttggcCcttctcacctgtatcggtgg	10	10	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29617627	T	T	29617627	2	4	188	1	0	0	0	0	0	0	0	1	11417	622	22	4		4	OVCH1	12	29617627	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	4237351	29617627	104234268	721	150199											
OVCH1	341350	broad.mit.edu	37	chr12	29649408	29649408	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaggagaaaaactacatatCaacgtgcattcttgctttcg	7	9	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29649408	A	A	29649408	1	1	188	0	1	0	0	0	0	0	0	0	11417	841	29	3		3	OVCH1	12	29649408	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	31781	29649408	104202487	722	150200											
DDX11	1663	broad.mit.edu	37	chr12	31237150	31237150	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggtctatggtgctgccGctgtgctgtcttttttgagc	13	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31237150	T	T	31237150	1	4	188	0	1	0	0	0	0	0	0	0	4376	1102	38	3		3	DDX11	12	31237150	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1587742	31237150	102614745	723	150201											
LRRK2	120892	broad.mit.edu	37	chr12	40634190	40634190	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggagattacacttgatgtAtctcacacaactataatgaa	6	7	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40634190	T	T	40634190	1	4	188	0	1	0	0	0	0	0	0	0	9120	464	16	5		5	LRRK2	12	40634190	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	9397040	40634190	93217705	724	150202											
PUS7L	83448	broad.mit.edu	37	chr12	44132699	44132699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagacagtgaaaactgagCcccttctggcctaaaaataa	7	10	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44132699	A	A	44132699	1	1	188	0	1	0	0	0	0	0	0	0	12942	754	26	3		3	PUS7L	12	44132699	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3498509	44132699	89719196	725	150203											
SLC38A1	81539	broad.mit.edu	37	chr12	46623501	46623501	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactaaatgatatgttactCatcaaaacatacatgaacag	4	7	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46623501	A	A	46623501	1	1	188	0	1	0	0	0	0	0	0	0	14715	841	29	3		3	SLC38A1	12	46623501	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2490802	46623501	87228394	726	150204											
RAPGEF3	10411	broad.mit.edu	37	chr12	48134736	48134736	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggctccagtcgtggtccgTcagctggcctgccaggtcct	14	14	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48134736	A	A	48134736	3	1	188	1	0	0	0	0	1	0	0	0	13153	1667	58	5	796	5	RAPGEF3	12	48134736	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1511235	48134736	85717159	727	150205											
KRT6B	3854	broad.mit.edu	37	chr12	52841367	52841367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccattcagcctgtggagaGgaacacagggagggtgagac	16	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52841367	A	A	52841367	1	1	188	0	1	0	0	0	0	0	0	0	8552	1015	35	4		4	KRT6B	12	52841367	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	4706631	52841367	81010528	728	150206											
KRT1	3848	broad.mit.edu	37	chr12	53071971	53071971	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgatggtcacaaattcattCtctgcatttgtccgcttgtt	7	9	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53071971	T	T	53071971	2	4	188	1	0	0	0	0	0	0	0	1	8518	912	32	4		4	KRT1	12	53071971	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	230604	53071971	80779924	729	150207											
KRT76	51350	broad.mit.edu	37	chr12	53169437	53169437	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttgagttgggcatgtgGggctgcccatcccaaatgta	12	12	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53169437	T	T	53169437	1	4	188	0	1	0	0	0	0	0	0	0	8560	1247	43	2		2	KRT76	12	53169437	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	97466	53169437	80682458	730	150208											
CSAD	51380	broad.mit.edu	37	chr12	53567073	53567073	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagaaaggaaaaaagaaAagagaaaagaaaagaaagaa	10	0	0	6			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53567073	T	T	53567073	1	4	188	0	1	0	0	0	0	0	0	0	3957	29	1	5		5	CSAD	12	53567073	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	397636	53567073	80284822	731	150209											
ATF7	11016	broad.mit.edu	37	chr12	53925481	53925481	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgaacaatagatatgacaTaaagatacgtcataaagata	6	5	1	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53925481	A	A	53925481	1	1	188	0	1	0	0	0	0	0	0	0	1090	1421	49	5		5	ATF7	12	53925481	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	358408	53925481	79926414	732	150210											
HOXC4	3221	broad.mit.edu	37	chr12	54448073	54448073	+	Frame_Shift_Del	DEL	G	-	-													cctgcagccagccagcccccGaccatccctccagcgccgcc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54448073	-	-	54448073	7	5	188	1	0	1	0	1	0	0	0	0	7380	1058	37	0	369	0	HOXC4	12	54448073	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	522592	54448073	79403822	733	150211											
KIAA0748	9840	broad.mit.edu	37	chr12	55367375	55367375	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccctgcaactaattccaTtccacaagtttattcttaca	2	14	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55367375	C	C	55367375	1	2	188	0	1	0	0	0	0	0	0	0	8260	1508	52	5		5	KIAA0748	12	55367375	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	919302	55367375	78484520	734	150212											
OR6C75	390323	broad.mit.edu	37	chr12	55759343	55759343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttagctcctggcttgcagGgtttctgatcatctttccac	8	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55759343	T	T	55759343	3	4	188	1	0	0	0	0	1	0	0	0	11293	1232	43	2	451	2	OR6C75	12	55759343	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	391968	55759343	78092552	735	150213											
OR6C2	341416	broad.mit.edu	37	chr12	55846340	55846340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaattttttctcttggcaGccatgtcctatgaccgctat	7	11	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55846340	T	T	55846340	3	4	188	1	0	0	0	0	1	0	0	0	11285	971	34	3	345	3	OR6C2	12	55846340	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	86997	55846340	78005555	736	150214											
STAC3	246329	broad.mit.edu	37	chr12	57642449	57642449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcgtgagccaccacgCgtggccatgtcccctccttg	11	16	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57642449	A	A	57642449	1	1	188	0	1	0	0	0	0	0	0	0	15359	783	27	3		3	STAC3	12	57642449	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1796109	57642449	76209446	737	150215											
PPP1R12A	4659	broad.mit.edu	37	chr12	80189568	80189568	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gattgcaatgaaccacaataTagcaatatatcttgacaata	5	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80189568	C	C	80189568	1	2	188	0	1	0	0	0	0	0	0	0	12455	1421	49	5		5	PPP1R12A	12	80189568	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	22547119	80189568	53662327	738	150216											
SLC6A15	55117	broad.mit.edu	37	chr12	85264531	85264531	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagttacaatgaggaggaAagatctctgaataatggcca	11	6	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85264531	T	T	85264531	1	4	188	0	1	0	0	0	0	0	0	0	14792	29	1	5		5	SLC6A15	12	85264531	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	5074963	85264531	48587364	739	150217											
PLEKHG7	440107	broad.mit.edu	37	chr12	93149727	93149727	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattccagaggtacaaaaaaAaaatcaattaggacttatgt	6	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93149727	C	C	93149727	1	2	188	0	1	0	0	0	0	0	0	0	12170	29	1	5		5	PLEKHG7	12	93149727	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	7885196	93149727	40702168	740	150218											
SLC17A8	246213	broad.mit.edu	37	chr12	100812016	100812016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatttcaaggctctactGcagtctgtaaatgtgtatgt	10	6	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100812016	T	T	100812016	1	4	188	0	1	0	0	0	0	0	0	0	14536	1334	46	3		3	SLC17A8	12	100812016	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	7662289	100812016	33039879	741	150219											
POLR3B	55703	broad.mit.edu	37	chr12	106851158	106851158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaatatttggcaaaaaGggcagaaaaaagtaacaacc	8	6	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106851158	T	T	106851158	1	4	188	0	1	0	0	0	0	0	0	0	12324	1015	35	2		2	POLR3B	12	106851158	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6039142	106851158	27000737	742	150220											
ACACB	32	broad.mit.edu	37	chr12	109609686	109609686	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactatgccaacgtggagctGattgtggacattgccaagag	12	8	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109609686	T	T	109609686	2	4	188	1	0	0	0	0	0	0	0	1	107	1277	45	3		3	ACACB	12	109609686	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2758528	109609686	24242209	743	150221											
ACACB	32	broad.mit.edu	37	chr12	109680290	109680290	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagggccccagcacgggatgCtgatcaatactccctacgtc	10	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109680290	T	T	109680290	2	4	188	1	0	0	0	0	0	0	0	1	107	796	28	4		4	ACACB	12	109680290	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	70604	109680290	24171605	744	150222											
ACACB	32	broad.mit.edu	37	chr12	109680382	109680382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctacatctatgacttcccGgaaatgttcaggcaggcaag	9	11	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109680382	T	T	109680382	2	4	188	1	0	0	0	0	0	0	0	1	107	1103	39	1		1	ACACB	12	109680382	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	92	109680382	24171513	745	150223											
CUX2	23316	broad.mit.edu	37	chr12	111785649	111785649	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacaaaggccaaggtccCcccaaagaggagcatcccga	11	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111785649	A	A	111785649	2	1	188	1	0	0	0	0	0	0	0	1	4098	610	22	2		2	CUX2	12	111785649	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	2105267	111785649	22066246	746	150224											
C12orf51	283450	broad.mit.edu	37	chr12	112622286	112622286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagatgccctgcgagctgCagatggaggcctggctggtg	19	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112622286	A	A	112622286	3	1	188	1	0	0	0	0	1	0	0	0	1709	710	25	3	2836	3	C12orf51	12	112622286	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	836637	112622286	21229609	747	150225											
CCDC60	160777	broad.mit.edu	37	chr12	119926744	119926744	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaagagattcctgtatgttCttccactccctttgctgttt	8	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119926744	A	A	119926744	1	1	188	0	1	0	0	0	0	0	0	0	2859	928	32	3		3	CCDC60	12	119926744	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	7304458	119926744	13925151	748	150226											
TMEM132B	114795	broad.mit.edu	37	chr12	126138981	126138981	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacttccttctgaatggcAgttcccagaagacttttcat	8	10	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126138981	G	G	126138981	3	3	188	1	0	0	0	0	1	0	0	0	16169	188	7	5	2996	5	TMEM132B	12	126138981	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	6212237	126138981	7712914	749	150227											
PIWIL1	9271	broad.mit.edu	37	chr12	130847292	130847292	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattgcattcttattctagcTgtgtttttctctgaatagct	6	7	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130847292	A	A	130847292	1	1	188	0	1	0	0	0	0	0	0	0	12052	1595	55	5		5	PIWIL1	12	130847292	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4708311	130847292	3004603	750	150228											
GPR133	283383	broad.mit.edu	37	chr12	131487810	131487810	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaacctgcacggcagcacGccccaggtcaccgtggaggg	13	16	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131487810	A	A	131487810	2	1	188	1	0	0	0	0	0	0	0	1	6708	1074	38	4		4	GPR133	12	131487810	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	640518	131487810	2364085	751	150229											
GALNT9	50614	broad.mit.edu	37	chr12	132688277	132688277	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccggcgtccttcccaacgGaagcgggcagcccggccagc	14	17	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132688277	T	T	132688277	1	4	188	0	1	0	0	0	0	0	0	0	6282	1189	41	3		3	GALNT9	12	132688277	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1200467	132688277	1163618	752	150230											
LATS2	26524	broad.mit.edu	37	chr13	21549289	21549289	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaaattcgaggtgtccatgGggtggctgatggtgggaacg	18	6	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21549289	A	A	21549289	3	1	188	1	0	0	0	0	1	0	0	0	8719	1232	43	4	283	4	LATS2	13	21549289	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08		21549289	93620589	753	150231											
PARP4	143	broad.mit.edu	37	chr13	25026372	25026372	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaagctaatgagtggccaAcccaggttctgagactcagg	12	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25026372	T	T	25026372	1	4	188	0	1	0	0	0	0	0	0	0	11557	58	2	5		5	PARP4	13	25026372	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	3477083	25026372	90143506	754	150232											
MTMR6	9107	broad.mit.edu	37	chr13	25840081	25840081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctctggggtaagtttcaCaaatctgtaaatatcaaaca	7	7	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25840081	A	A	25840081	3	1	188	1	0	0	0	0	1	0	0	0	10041	478	17	3	1438	3	MTMR6	13	25840081	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	813709	25840081	89329797	755	150233											
NUPL1	9818	broad.mit.edu	37	chr13	25881941	25881941	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttttgtttctttaaatAagcaacccttctgtggggct	8	7	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25881941	T	T	25881941	1	4	188	0	1	0	0	0	0	0	0	0	10869	377	13	5		5	NUPL1	13	25881941	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	41860	25881941	89287937	756	150234											
FLT1	2321	broad.mit.edu	37	chr13	28891598	28891598	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgccctggtgaaaagcgaGctgtcagatggggagcagag	16	7	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28891598	A	A	28891598	1	1	188	0	1	0	0	0	0	0	0	0	5999	986	34	4		4	FLT1	13	28891598	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3009657	28891598	86278280	757	150235											
NBEA	26960	broad.mit.edu	37	chr13	35730044	35730044	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggcgcatggcaacataTgagactaaatcaaaactttt	9	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35730044	A	A	35730044	1	1	188	0	1	0	0	0	0	0	0	0	10281	1479	51	5		5	NBEA	13	35730044	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	6838446	35730044	79439834	758	150236											
DCLK1	9201	broad.mit.edu	37	chr13	36385037	36385037	+	Frame_Shift_Del	DEL	G	-	-													cagactgtgtacagggggccGtctacaatggtggccagtcc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36385037	-	-	36385037	7	5	188	1	0	1	0	1	0	0	0	0	4324	1136	40	0	594	0	DCLK1	13	36385037	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	654993	36385037	78784841	759	150237											
POSTN	10631	broad.mit.edu	37	chr13	38158075	38158075	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaaaaggtgtgtaggcaGagagcaggaacaacagtgtc	14	5	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38158075	T	T	38158075	1	4	188	0	1	0	0	0	0	0	0	0	12354	957	33	3		3	POSTN	13	38158075	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1773038	38158075	77011803	760	150238											
FREM2	341640	broad.mit.edu	37	chr13	39430390	39430390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaatatgatagcagagatGcaggtaagtaatgtaatgtg	12	2	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39430390	T	T	39430390	3	4	188	1	0	0	0	0	1	0	0	0	6105	1319	46	3	7099	3	FREM2	13	39430390	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1272315	39430390	75739488	761	150239											
NHLRC3	387921	broad.mit.edu	37	chr13	39621177	39621177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttttgtgtgtttctcagGtgtgggttgctgaccgagga	14	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39621177	T	T	39621177	3	4	188	1	0	0	0	0	1	0	0	0	10502	1275	44	3	701	3	NHLRC3	13	39621177	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	190787	39621177	75548701	762	150240											
MRPS31	10240	broad.mit.edu	37	chr13	41345263	41345263	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaggaacgtcgagactcTaggaaacatcgccgagacac	12	10	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41345263	C	C	41345263	3	2	188	1	0	0	0	0	1	0	0	0	9935	1530	53	5	1205	5	MRPS31	13	41345263	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1724086	41345263	73824615	763	150241											
KIAA0564	23078	broad.mit.edu	37	chr13	42142415	42142415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccatggcaacgaaagacCgaccagctggtaaagttctc	9	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42142415	A	A	42142415	3	1	188	1	0	0	0	0	1	0	0	0	8255	652	23	1	85	1	KIAA0564	13	42142415	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	797152	42142415	73027463	764	150242											
SERP2	387923	broad.mit.edu	37	chr13	44971347	44971347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagccgggctcactgtGggctgggtttccagctgtgt	16	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44971347	T	T	44971347	1	4	188	0	1	0	0	0	0	0	0	0	14198	1363	47	2		2	SERP2	13	44971347	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2828932	44971347	70198531	765	150243											
LCP1	3936	broad.mit.edu	37	chr13	46726995	46726995	+	Frame_Shift_Del	DEL	T	-	-													gtcccaggaccagataaggcTtcccctccttcaggtcctca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46726995	-	-	46726995	7	5	188	1	0	1	0	1	0	0	0	0	8763	1609	56	0	1264	0	LCP1	13	46726995	Frame_Shift_Del	DEL	T	TCGA-64-5775-01A-01D-1625-08	1755648	46726995	68442883	766	150244											
LPAR6	10161	broad.mit.edu	37	chr13	48986493	48986494	+	Nonsense_Mutation	DNP	TG	AT	AT													cacaaacaccatgctgaacaTgcacccatacaaagtgtact							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	48986494	AT	AT	48986493	4	1	188	1	0	0	0	0	0	1	0	0	8996	1464	51	5	971	5	LPAR6	13	48986493	Nonsense_Mutation	DNP	TG	TCGA-64-5775-01A-01D-1625-08	2259498	48986493	66183385	767	150245											
OLFM4	10562	broad.mit.edu	37	chr13	53602929	53602929	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcactataagaagcccCtgggctctctgcagagccag	12	13	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53602929	A	A	53602929	1	1	188	0	1	0	0	0	0	0	0	0	10950	696	24	2		2	OLFM4	13	53602929	5'Flank	SNP	C	TCGA-64-5775-01A-01D-1625-08	4616436	53602929	61566949	768	150246											
PCDH17	27253	broad.mit.edu	37	chr13	58207410	58207410	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acgacaacagcccggtcttcGaggcgccatcctacttggtg	11	14	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207410	T	T	58207410	4	4	188	1	0	0	0	0	0	1	0	0	11606	1059	37	3	732	3	PCDH17	13	58207410	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4604481	58207410	56962468	769	150247											
DACH1	1602	broad.mit.edu	37	chr13	72204890	72204890	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaggtaattcaaattctgAtttttcatttaatagttcct	5	5	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72204890	C	C	72204890	1	2	188	0	1	0	0	0	0	0	0	0	4253	348	12	5		5	DACH1	13	72204890	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	13997480	72204890	42964988	770	150248											
DACH1	1602	broad.mit.edu	37	chr13	72278761	72278761	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagcctgagctgctggaaCctcttccctgtggattcatg	13	11	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72278761	T	T	72278761	1	4	188	0	1	0	0	0	0	0	0	0	4253	522	18	4		4	DACH1	13	72278761	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	73871	72278761	42891117	771	150249											
LMO7	4008	broad.mit.edu	37	chr13	76378697	76378697	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtactgagatgggtgtgatTattgagtttcgtatgctttt	13	3	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76378697	A	A	76378697	1	1	188	0	1	0	0	0	0	0	0	0	8929	1769	61	5		5	LMO7	13	76378697	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4099936	76378697	38791181	772	150250											
SLITRK5	26050	broad.mit.edu	37	chr13	88329901	88329901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtgtatgaatacatccCccacccactgggccacatgt	7	16	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88329901	A	A	88329901	3	1	188	1	0	0	0	0	1	0	0	0	14860	623	22	2	2260	2	SLITRK5	13	88329901	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	11951204	88329901	26839977	773	150251											
DZIP1	22873	broad.mit.edu	37	chr13	96241928	96241928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatactggcatcctgatctTggactttcagcctccaaaat	6	12	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96241928	A	A	96241928	1	1	188	0	1	0	0	0	0	0	0	0	4903	1827	63	5		5	DZIP1	13	96241928	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	7912027	96241928	18927950	774	150252											
TMTC4	84899	broad.mit.edu	37	chr13	101315136	101315136	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgggtacataaagggagCctgttttaggaaaccaggcg	14	6	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101315136	A	A	101315136	1	1	188	0	1	0	0	0	0	0	0	0	16386	754	26	3		3	TMTC4	13	101315136	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5073208	101315136	13854742	775	150253											
FGF14	2259	broad.mit.edu	37	chr13	102527578	102527578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggttccatcgagagctccatCggggtgcatttgcaagtagt	13	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102527578	A	A	102527578	3	1	188	1	0	0	0	0	1	0	0	0	5900	884	31	3	497	3	FGF14	13	102527578	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1212442	102527578	12642300	776	150254											
F7	2155	broad.mit.edu	37	chr13	113773184	113773184	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acgtggtacctgacgggcatCgtcagctggggccagggctg	17	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113773184	A	A	113773184	2	1	188	1	0	0	0	0	0	0	0	1	5392	874	31	3		3	F7	13	113773184	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	11245606	113773184	1396694	777	150255											
PROZ	8858	broad.mit.edu	37	chr13	113814250	113814250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctggggctggcggccggCcggggaggaagccaggcagc	23	11	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113814250	A	A	113814250	1	1	188	0	1	0	0	0	0	0	0	0	12668	754	26	3		3	PROZ	13	113814250	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	41066	113814250	1355628	778	150256											
DCAF11	80344	broad.mit.edu	37	chr14	24592341	24592341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggcttggacttgggtGggggcagcacatcctgactg	17	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24592341	T	T	24592341	1	4	188	0	1	0	0	0	0	0	0	0	4295	1363	47	2		2	DCAF11	14	24592341	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08		24592341	82757199	779	150257											
AKAP6	9472	broad.mit.edu	37	chr14	33015489	33015489	+	Frame_Shift_Del	DEL	C	-	-													cttccaaggccatagaggggCcacaaacaaattctgcttcc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33015489	-	-	33015489	7	5	188	1	0	1	0	1	0	0	0	0	455	739	26	0	1640	0	AKAP6	14	33015489	Frame_Shift_Del	DEL	C	TCGA-64-5775-01A-01D-1625-08	8423148	33015489	74334051	780	150258											
LRFN5	145581	broad.mit.edu	37	chr14	42356124	42356124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatgctttcgctgacctacGaaatttgagggctttgcatt	9	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42356124	T	T	42356124	3	4	188	1	0	0	0	0	1	0	0	0	9028	1058	37	3	298	3	LRFN5	14	42356124	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	9340635	42356124	64993416	781	150259											
LRFN5	145581	broad.mit.edu	37	chr14	42360350	42360350	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattcatatgttataaatgTacttaatgatactgaaatga	5	3	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42360350	C	C	42360350	1	2	188	0	1	0	0	0	0	0	0	0	9028	1653	57	5		5	LRFN5	14	42360350	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	4226	42360350	64989190	782	150260											
MDGA2	161357	broad.mit.edu	37	chr14	47670205	47670205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgccttcgcagcatacgaCcaccactttcctgcccagca	7	17	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47670205	A	A	47670205	1	1	188	0	1	0	0	0	0	0	0	0	9500	522	18	3		3	MDGA2	14	47670205	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5309855	47670205	59679335	783	150261											
NID2	22795	broad.mit.edu	37	chr14	52520664	52520664	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtggaagattctgtttcAggatagaatggccaataagt	12	4	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52520664	T	T	52520664	1	4	188	0	1	0	0	0	0	0	0	0	10510	203	7	5		5	NID2	14	52520664	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	4850459	52520664	54828876	784	150262											
SIX1	6495	broad.mit.edu	37	chr14	61113223	61113223	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgagctggacatgagCggcttgcccccttccagagg	12	13	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61113223	A	A	61113223	2	1	188	1	0	0	0	0	0	0	0	1	14459	755	27	3		3	SIX1	14	61113223	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	8592559	61113223	46236317	785	150263											
PPP2R5E	5529	broad.mit.edu	37	chr14	63858436	63858436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcatgagccactgcgccCagccctgatgatgcggtttt	12	13	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63858436	A	A	63858436	1	1	188	0	1	0	0	0	0	0	0	0	12497	609	21	2		2	PPP2R5E	14	63858436	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2745213	63858436	43491104	786	150264											
SYNE2	23224	broad.mit.edu	37	chr14	64445806	64445806	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgcatttttccttggcatGatttcccattaactcttcgg	6	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64445806	A	A	64445806	1	1	188	0	1	0	0	0	0	0	0	0	15565	1305	45	4		4	SYNE2	14	64445806	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	587370	64445806	42903734	787	150265											
PLEKHH1	57475	broad.mit.edu	37	chr14	68038673	68038673	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaaggagcccctcacctcTtcccatgggcacttgaacat	8	15	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68038673	A	A	68038673	1	1	188	0	1	0	0	0	0	0	0	0	12171	1624	56	5		5	PLEKHH1	14	68038673	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	3592867	68038673	39310867	788	150266											
PCNX	22990	broad.mit.edu	37	chr14	71500153	71500153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttttccgcaggattcttGggatggccagcatattccag	10	10	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71500153	T	T	71500153	3	4	188	1	0	0	0	0	1	0	0	0	11685	1357	47	2	3632	2	PCNX	14	71500153	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	3461480	71500153	35849387	789	150267											
TMEM63C	57156	broad.mit.edu	37	chr14	77715175	77715175	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaacgtgttcagcgtggtGatggcgtacagcatcacttg	13	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77715175	C	C	77715175	2	2	188	1	0	0	0	0	0	0	0	1	16315	1277	45	4		4	TMEM63C	14	77715175	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	6215022	77715175	29634365	790	150268											
NRXN3	9369	broad.mit.edu	37	chr14	78709802	78709802	+	RNA	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgaccgcctgcgcacggtGctgatgcttgatggcgaggg	17	11	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78709802	T	T	78709802	1	4	188	0	1	0	0	0	0	0	0	0	10762	1334	46	3		3	NRXN3	14	78709802	RNA	SNP	G	TCGA-64-5775-01A-01D-1625-08	994627	78709802	28639738	791	150269											
NRXN3	9369	broad.mit.edu	37	chr14	80271349	80271349	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaataatcgtaatgatgggaGatgggacacagtgataaatc	11	4	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80271349	A	A	80271349	1	1	188	0	1	0	0	0	0	0	0	0	10762	957	33	4		4	NRXN3	14	80271349	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1561547	80271349	27078191	792	150270											
GALC	2581	broad.mit.edu	37	chr14	88431764	88431764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaacacgcatagacacaCagtttatataatcttctcta	3	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88431764	A	A	88431764	1	1	188	0	1	0	0	0	0	0	0	0	6263	493	17	3		3	GALC	14	88431764	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	8160415	88431764	18917776	793	150271											
GOLGA5	9950	broad.mit.edu	37	chr14	93275695	93275695	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggaatgctgaccattcaAagagtgatcgaatgactcga	11	7	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93275695	C	C	93275695	3	2	188	1	0	0	0	0	1	0	0	0	6620	15	1	5	833	5	GOLGA5	14	93275695	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	4843931	93275695	14073845	794	150272											
OTUB2	78990	broad.mit.edu	37	chr14	94505495	94505495	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagcctcaagtctctcGgaggttttcgttacactcag	10	11	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94505495	T	T	94505495	1	4	188	0	1	0	0	0	0	0	0	0	11406	1131	39	1		1	OTUB2	14	94505495	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1229800	94505495	12844045	795	150273											
SERPINA3	12	broad.mit.edu	37	chr14	95088785	95088785	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccttcaccagcaaggctgAcctgtcagggatcacagggg	13	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95088785	G	G	95088785	3	3	188	1	0	0	0	0	1	0	0	0	14203	275	10	5	1035	5	SERPINA3	14	95088785	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	583290	95088785	12260755	796	150274											
TDRD9	122402	broad.mit.edu	37	chr14	104460728	104460728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggttcataaaaggtatGttgaaaatgatacagctgta	10	5	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104460728	T	T	104460728	1	4	188	0	1	0	0	0	0	0	0	0	15858	1392	48	3		3	TDRD9	14	104460728	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	9371943	104460728	2888812	797	150275											
INF2	64423	broad.mit.edu	37	chr14	105208070	105208070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctggcgaccccacggagGgggccccccacggtttgaac	15	15	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105208070	T	T	105208070	1	4	188	0	1	0	0	0	0	0	0	0	7804	1247	43	2		2	INF2	14	105208070	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	747342	105208070	2141470	798	150276											
OR4M2	390538	broad.mit.edu	37	chr15	22369185	22369185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgatgatctgtagtagtGgtctgatctctgtggtgtgt	14	4	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22369185	T	T	22369185	3	4	188	1	0	0	0	0	1	0	0	0	11170	1348	47	2	612	2	OR4M2	15	22369185	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08		22369185	80162207	799	150277											
MKRN3	7681	broad.mit.edu	37	chr15	23812161	23812161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggcaggggtaactgccCatttggagacacatgctttt	13	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23812161	A	A	23812161	3	1	188	1	0	0	0	0	1	0	0	0	9701	594	21	2	1234	2	MKRN3	15	23812161	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1442976	23812161	78719231	800	150278											
MAGEL2	54551	broad.mit.edu	37	chr15	23889461	23889461	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagagaccgtttgtctcccgGacatccaaccctaacttgaa	7	13	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23889461	C	C	23889461	2	2	188	1	0	0	0	0	0	0	0	1	9281	1161	41	4		4	MAGEL2	15	23889461	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	77300	23889461	78641931	801	150279											
GABRB3	2562	broad.mit.edu	37	chr15	27182299	27182299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctgggaatgatttcatGtttatgtcactttctgcccc	9	10	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27182299	T	T	27182299	1	4	188	0	1	0	0	0	0	0	0	0	6228	1392	48	3		3	GABRB3	15	27182299	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3292838	27182299	75349093	802	150280											
OTUD7A	161725	broad.mit.edu	37	chr15	32058191	32058191	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaggtagaaattttttgctCatcaaactcctgagcactaa	7	8	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32058191	A	A	32058191	1	1	188	0	1	0	0	0	0	0	0	0	11412	841	29	3		3	OTUD7A	15	32058191	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4875892	32058191	70473201	803	150281											
RYR3	6263	broad.mit.edu	37	chr15	33842464	33842464	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accaaggccttatactgcaaGaccgggcaaagtcagacacc	9	13	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33842464	T	T	33842464	3	4	188	1	0	0	0	0	1	0	0	0	13881	942	33	3	957	3	RYR3	15	33842464	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1784273	33842464	68688928	804	150282											
RYR3	6263	broad.mit.edu	37	chr15	33991938	33991938	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggttgctagctgctgcCgtttcctttgctatttctgt	10	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33991938	T	T	33991938	3	4	188	1	0	0	0	0	1	0	0	0	13881	652	23	4	6445	4	RYR3	15	33991938	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	149474	33991938	68539454	805	150283											
SPRED1	161742	broad.mit.edu	37	chr15	38614714	38614714	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttcacactttaaccatgtCagcttttgtgatatgtgacc	6	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38614714	T	T	38614714	1	4	188	0	1	0	0	0	0	0	0	0	15210	841	29	4		4	SPRED1	15	38614714	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4622776	38614714	63916678	806	150284											
EIF2AK4	440275	broad.mit.edu	37	chr15	40265983	40265983	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcattcccagtcccctttaGagctccttctctgttccatt	5	15	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40265983	A	A	40265983	1	1	188	0	1	0	0	0	0	0	0	0	5039	957	33	4		4	EIF2AK4	15	40265983	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1651269	40265983	62265409	807	150285											
C15orf52	388115	broad.mit.edu	37	chr15	40629890	40629890	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgaagccagctccatcccGcaccacaggcaacctgccca	7	21	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40629890	A	A	40629890	1	1	188	0	1	0	0	0	0	0	0	0	1813	1102	38	4		4	C15orf52	15	40629890	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	363907	40629890	61901502	808	150286											
MGA	23269	broad.mit.edu	37	chr15	42003574	42003574	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgctgttttctggaggtAtattagtgcttggctagaaa	12	5	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42003574	T	T	42003574	1	4	188	0	1	0	0	0	0	0	0	0	9633	464	16	5		5	MGA	15	42003574	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1373684	42003574	60527818	809	150287											
UBR1	197131	broad.mit.edu	37	chr15	43308167	43308167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaataagattctgaaaccCtgattaccccttacatcctg	5	11	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43308167	A	A	43308167	1	1	188	0	1	0	0	0	0	0	0	0	17027	696	24	2		2	UBR1	15	43308167	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1304593	43308167	59223225	810	150288											
TGM7	116179	broad.mit.edu	37	chr15	43572139	43572139	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgaagacagctctctcCtcaggggatcctgcagaagg	11	11	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43572139	T	T	43572139	2	4	188	1	0	0	0	0	0	0	0	1	15958	680	24	4		4	TGM7	15	43572139	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	263972	43572139	58959253	811	150289											
CATSPER2	117155	broad.mit.edu	37	chr15	43927665	43927665	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttatattcaagcaaaagTgtggtaagaaaaaaaaagtt	8	3	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43927665	A	A	43927665	1	1	188	0	1	0	0	0	0	0	0	0	2714	1711	59	5		5	CATSPER2	15	43927665	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	355526	43927665	58603727	812	150290											
CASC4	113201	broad.mit.edu	37	chr15	44630106	44630106	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatattccacatgggaaagGtattattgttattattcttt	6	5	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44630106	T	T	44630106	5	4	188	1	0	0	0	0	0	0	1	0	2688	1275	44	3	740	3	CASC4	15	44630106	Splice_Site	SNP	G	TCGA-64-5775-01A-01D-1625-08	702441	44630106	57901286	813	150291											
SLC24A5	283652	broad.mit.edu	37	chr15	48413249	48413249	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcacagcagaaatgcagaCaaaagggggccaaacatggg	14	8	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48413249	T	T	48413249	3	4	188	1	0	0	0	0	1	0	0	0	14583	478	17	4	10	4	SLC24A5	15	48413249	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3783143	48413249	54118143	814	150292											
ATP8B4	79895	broad.mit.edu	37	chr15	50226373	50226373	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactgagaaatccacaggctCtttttcctgtaggagaacaa	9	9	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50226373	A	A	50226373	4	1	188	1	0	0	0	0	0	1	0	0	1201	922	32	3	2340	3	ATP8B4	15	50226373	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1813124	50226373	52305019	815	150293											
HDC	3067	broad.mit.edu	37	chr15	50555433	50555433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtcactgtgtctcaccCcaggcatgatgattcgttca	10	11	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50555433	A	A	50555433	3	1	188	1	0	0	0	0	1	0	0	0	7082	637	22	2	1829	2	HDC	15	50555433	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	329060	50555433	51975959	816	150294											
AP4E1	23431	broad.mit.edu	37	chr15	51201079	51201079	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcgtccttctcctcgaGgctgggcagccttgtccgcg	13	15	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51201079	T	T	51201079	3	4	188	1	0	0	0	0	1	0	0	0	754	1000	35	2	106	2	AP4E1	15	51201079	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	645646	51201079	51330313	817	150295											
NEDD4	4734	broad.mit.edu	37	chr15	56122021	56122021	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccacattttagtagttcCccggaaaattttaagtcaag	8	8	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56122021	A	A	56122021	1	1	188	0	1	0	0	0	0	0	0	0	10405	638	22	2		2	NEDD4	15	56122021	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	4920942	56122021	46409371	818	150296											
LBXCOR1	390598	broad.mit.edu	37	chr15	68119376	68119376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcttccctacggccttcGgcctatgccccaaaaaggac	9	16	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68119376	T	T	68119376	3	4	188	1	0	0	0	0	1	0	0	0	8727	1116	39	1	1088	1	LBXCOR1	15	68119376	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	11997355	68119376	34412016	819	150297											
CORO2B	10391	broad.mit.edu	37	chr15	69018107	69018107	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgggcggcaggcagctggaGactcacctgggaaatccttg	15	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69018107	A	A	69018107	1	1	188	0	1	0	0	0	0	0	0	0	3789	957	33	4		4	CORO2B	15	69018107	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	898731	69018107	33513285	820	150298											
NOX5	79400	broad.mit.edu	37	chr15	69327796	69327796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccagcttatgggctacGtggtagtggggctgtccctc	13	12	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69327796	T	T	69327796	3	4	188	1	0	0	0	0	1	0	0	0	10654	1145	40	3	1013	3	NOX5	15	69327796	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	309689	69327796	33203596	821	150299											
LRRC49	54839	broad.mit.edu	37	chr15	71151289	71151289	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagccctcttaacctggaGgtggaccccaacatccaggc	10	15	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71151289	A	A	71151289	1	1	188	0	1	0	0	0	0	0	0	0	9093	1015	35	4		4	LRRC49	15	71151289	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1823493	71151289	31380103	822	150300											
MYO9A	4649	broad.mit.edu	37	chr15	72208825	72208825	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctttaaagaatttacttcTagcaagtgctgaaagaagag	9	5	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72208825	C	C	72208825	2	2	188	1	0	0	0	0	0	0	0	1	10178	1509	53	5		5	MYO9A	15	72208825	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	1057536	72208825	30322567	823	150301											
NEO1	4756	broad.mit.edu	37	chr15	73409019	73409019	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aattgaatggaaaaaagatgGaacttttttaaacttagtat	7	2	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73409019	A	A	73409019	3	1	188	1	0	0	0	0	1	0	0	0	10431	1174	41	4	275	4	NEO1	15	73409019	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1200194	73409019	29122373	824	150302											
TBC1D21	161514	broad.mit.edu	37	chr15	74173963	74173963	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcgatagagcccatgacctCcacctcccacccccacccca	4	22	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74173963	A	A	74173963	1	1	188	0	1	0	0	0	0	0	0	0	15729	870	30	3		3	TBC1D21	15	74173963	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	764944	74173963	28357429	825	150303											
TBC1D21	161514	broad.mit.edu	37	chr15	74178588	74178588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgggacccaactgtcaGtccctaatcatgggggggct	15	11	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74178588	T	T	74178588	1	4	188	0	1	0	0	0	0	0	0	0	15729	1044	36	3		3	TBC1D21	15	74178588	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	4625	74178588	28352804	826	150304											
ETFA	2108	broad.mit.edu	37	chr15	76552795	76552795	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaggagggcccttctggCctgcatggtcatgagaagag	16	8	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76552795	A	A	76552795	1	1	188	0	1	0	0	0	0	0	0	0	5311	754	26	3		3	ETFA	15	76552795	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2374207	76552795	25978597	827	150305											
KIAA1199	57214	broad.mit.edu	37	chr15	81188358	81188358	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagaagagttccaggtGcttccctgcagatcctgcgc	12	13	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81188358	T	T	81188358	2	4	188	1	0	0	0	0	0	0	0	1	8283	1306	46	3		3	KIAA1199	15	81188358	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	4635563	81188358	21343034	828	150306											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84373230	84373230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaagacacaacaggggaGcagttcctcacttatcgcta	10	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84373230	T	T	84373230	3	4	188	1	0	0	0	0	1	0	0	0	276	962	34	3	165	3	ADAMTSL3	15	84373230	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	3184872	84373230	18158162	829	150307											
AKAP13	11214	broad.mit.edu	37	chr15	86236676	86236676	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaacaaagatgcctatactTgtgcaagtaagagacatgct	8	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86236676	A	A	86236676	3	1	188	1	0	0	0	0	1	0	0	0	449	1812	63	5	5590	5	AKAP13	15	86236676	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	1863446	86236676	16294716	830	150308											
NTRK3	4916	broad.mit.edu	37	chr15	88679745	88679745	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgactatccagtccacatCaggaaggggtgatccagagc	12	10	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88679745	G	G	88679745	3	3	188	1	0	0	0	0	1	0	0	0	10803	826	29	4	2115	4	NTRK3	15	88679745	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2443069	88679745	13851647	831	150309											
POLG	5428	broad.mit.edu	37	chr15	89867077	89867077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttgacctggcactgcagctCgcaagttctccatcttggcc	10	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89867077	A	A	89867077	3	1	188	1	0	0	0	0	1	0	0	0	12295	884	31	3	1641	3	POLG	15	89867077	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1187332	89867077	12664315	832	150310											
RHCG	51458	broad.mit.edu	37	chr15	90023434	90023434	+	Intron	DEL	C	-	-													acccatcatggctgccttcaCccatcatggccaccttcacc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90023434	-	-	90023434	6	5	188	0	1	1	0	1	0	0	0	0	13435	522	18	0		0	RHCG	15	90023434	Intron	DEL	C	TCGA-64-5775-01A-01D-1625-08	156357	90023434	12507958	833	150311											
BLM	641	broad.mit.edu	37	chr15	91303719	91303719	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgggaaaaaagcgaatatAttttgctacaatttctattt	6	4	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91303719	C	C	91303719	1	2	188	0	1	0	0	0	0	0	0	0	1451	464	16	5		5	BLM	15	91303719	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1280285	91303719	11227673	834	150312											
FES	2242	broad.mit.edu	37	chr15	91432679	91432679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgacagtatgggtaagCcccgtccttgctcctgctgg	12	14	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91432679	A	A	91432679	1	1	188	0	1	0	0	0	0	0	0	0	5877	754	26	3		3	FES	15	91432679	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	128960	91432679	11098713	835	150313											
SV2B	9899	broad.mit.edu	37	chr15	91769503	91769503	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaccaaggaatggatgacTacaagtatcaggacaattat	9	6	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91769503	C	C	91769503	3	2	188	1	0	0	0	0	1	0	0	0	15536	1522	53	5	12	5	SV2B	15	91769503	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	336824	91769503	10761889	836	150314											
SPATA8	145946	broad.mit.edu	37	chr15	97328107	97328107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtatacgaagagagaaCgtttagggagcactgttctc	12	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97328107	A	A	97328107	1	1	188	0	1	0	0	0	0	0	0	0	15131	551	19	3		3	SPATA8	15	97328107	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5558604	97328107	5203285	837	150315											
ARRDC4	91947	broad.mit.edu	37	chr15	98509171	98509172	+	Frame_Shift_Del	DEL	TG	-	-													aatatggaagcattcagtacTgtgtgcgggcagtgttggaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98509172	-	-	98509171	7	5	188	1	0	1	0	1	0	0	0	0	989	1580	55	0	431	0	ARRDC4	15	98509171	Frame_Shift_Del	DEL	TG	TCGA-64-5775-01A-01D-1625-08	1181064	98509171	4022221	838	150316											
TARSL2	123283	broad.mit.edu	37	chr15	102197239	102197240	+	Splice_Site	DNP	CC	TA	TA													ttcaaaaaattcactggataCctagaagaaaatgaaacacc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	102197240	TA	TA	102197239	5	4	188	1	0	0	0	0	0	0	1	0	15680	521	18	4	270	4	TARSL2	15	102197239	Splice_Site	DNP	CC	TCGA-64-5775-01A-01D-1625-08	3688068	102197239	334153	839	150317											
DNASE1L2	1775	broad.mit.edu	37	chr16	2288443	2288443	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcctggctggggcatgcCacctgcagaccctggctctg	15	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2288443	A	A	2288443	1	1	188	0	1	0	0	0	0	0	0	0	4702	609	21	2		2	DNASE1L2	16	2288443	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08		2288443	88066310	840	150318											
NLRC3	197358	broad.mit.edu	37	chr16	3600408	3600408	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgtcaccctggcaggtggActcactccaggctctccagg	11	15	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3600408	G	G	3600408	1	3	188	0	1	0	0	0	0	0	0	0	10563	290	10	5		5	NLRC3	16	3600408	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1311965	3600408	86754345	841	150319											
VASN	114990	broad.mit.edu	37	chr16	4431769	4431769	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctgctggcagctgcccgCaaccccttcaactgcgtgtg	12	16	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4431769	T	T	4431769	2	4	188	1	0	0	0	0	0	0	0	1	17254	697	25	4		4	VASN	16	4431769	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	831361	4431769	85922984	842	150320											
A2BP1	54715	broad.mit.edu	37	chr16	7102111	7102111	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctaagggtaggtgcaccTgcttgtaaaatgcttcctga	11	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7102111	A	A	7102111	1	1	188	0	1	0	0	0	0	0	0	0	3	1595	55	5		5	A2BP1	16	7102111	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2670342	7102111	83252642	843	150321											
TNP2	7142	broad.mit.edu	37	chr16	11363161	11363161	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggcctcctcctcatcctCtcccagcaggcctagcttta	7	18	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11363161	A	A	11363161	5	1	188	1	0	0	0	0	0	0	1	0	16457	928	32	3		3	TNP2	16	11363161	Splice_Site	SNP	C	TCGA-64-5775-01A-01D-1625-08	4261050	11363161	78991592	844	150322											
PRM2	5620	broad.mit.edu	37	chr16	11369761	11369761	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggggcccaggaagcttagTgccttctgcatgttctcttc	12	11	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11369761	A	A	11369761	3	1	188	1	0	0	0	0	1	0	0	0	12639	1696	59	5	7	5	PRM2	16	11369761	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	6600	11369761	78984992	845	150323											
ERCC4	2072	broad.mit.edu	37	chr16	14028027	14028027	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatattatcacatagaatgAgatatttttatttctctaca	3	5	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14028027	T	T	14028027	1	4	188	0	1	0	0	0	0	0	0	0	5257	319	11	5		5	ERCC4	16	14028027	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	2658266	14028027	76326726	846	150324											
GDE1	51573	broad.mit.edu	37	chr16	19519128	19519146	+	Intron	DEL	TAAAATTGATTAAAATGTG	-	-													aataaagagattcatatattTaaaattgattaaaatgtgat							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19519146	-	-	19519128	6	5	188	0	1	1	0	1	0	0	0	0	6373	1769	61	0		0	GDE1	16	19519128	Intron	DEL	TAAAATTGATTAAAATGTG	TCGA-64-5775-01A-01D-1625-08	5491101	19519128	70835625	847	150325											
ACSM2A	123876	broad.mit.edu	37	chr16	20481152	20481152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagaacagcatgggactaGgaagagtgaagctgggaaga	16	4	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20481152	T	T	20481152	1	4	188	0	1	0	0	0	0	0	0	0	183	1015	35	2		2	ACSM2A	16	20481152	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	962024	20481152	69873601	848	150326											
OTOA	146183	broad.mit.edu	37	chr16	21698946	21698947	+	Frame_Shift_Del	DEL	GC	-	-													gagcggctccctcgggacctGcgcgaggatgcctttaagaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21698947	-	-	21698946	7	5	188	1	0	1	0	1	0	0	0	0	11396	1306	46	0	672	0	OTOA	16	21698946	Frame_Shift_Del	DEL	GC	TCGA-64-5775-01A-01D-1625-08	1217794	21698946	68655807	849	150327											
EEF2K	29904	broad.mit.edu	37	chr16	22285173	22285173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggttccagtcttggctgccCcatgaccagtccagcaacca	10	15	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22285173	A	A	22285173	1	1	188	0	1	0	0	0	0	0	0	0	4970	638	22	2		2	EEF2K	16	22285173	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	586227	22285173	68069580	850	150328											
IL4R	3566	broad.mit.edu	37	chr16	27356125	27356125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcctggaggcatgtcccGgacacagctgtggggcccag	16	12	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27356125	T	T	27356125	1	4	188	0	1	0	0	0	0	0	0	0	7768	1131	39	1		1	IL4R	16	27356125	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	5070952	27356125	62998628	851	150329											
GTF3C1	2975	broad.mit.edu	37	chr16	27499558	27499558	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accacataacctttcttcttTctcttgatcttcttcccagg	3	14	5	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27499558	A	A	27499558	3	1	188	1	0	0	0	0	1	0	0	0	6937	1780	62	5	2699	5	GTF3C1	16	27499558	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	143433	27499558	62855195	852	150330											
PRSS36	146547	broad.mit.edu	37	chr16	31157191	31157191	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgaggttgaagggaccGggctggctgtagagacattg	18	5	0	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31157191	A	A	31157191	2	1	188	1	0	0	0	0	0	0	0	1	12731	1103	39	4		4	PRSS36	16	31157191	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	3657633	31157191	59197562	853	150331											
ITGAD	3681	broad.mit.edu	37	chr16	31414948	31414948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctgacgttcacggccaCgggcatcctgacagtggtgt	14	12	1	2	rs144787223		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31414948	A	A	31414948	3	1	188	1	0	0	0	0	1	0	0	0	7954	536	19	3	712	3	ITGAD	16	31414948	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	257757	31414948	58939805	854	150332											
ABCC12	94160	broad.mit.edu	37	chr16	48145573	48145573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgtaaaggtgttcaggatCctggagacaaaatgaaattc	10	5	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48145573	A	A	48145573	3	1	188	1	0	0	0	0	1	0	0	0	52	869	30	3	2014	3	ABCC12	16	48145573	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	16730625	48145573	42209180	855	150333											
ABCC11	85320	broad.mit.edu	37	chr16	48201304	48201304	+	Intron	DEL	G	-	-													ggtagagaaaggcgaggggaGgatcagggcacagctgagct							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48201304	-	-	48201304	6	5	188	0	1	1	0	1	0	0	0	0	51	1015	35	0		0	ABCC11	16	48201304	Intron	DEL	G	TCGA-64-5775-01A-01D-1625-08	55731	48201304	42153449	856	150334											
C16orf78	123970	broad.mit.edu	37	chr16	49407822	49407822	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagacagtgccagccacctCccacccaagccactagcaag	8	17	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49407822	A	A	49407822	1	1	188	0	1	0	0	0	0	0	0	0	1849	870	30	3		3	C16orf78	16	49407822	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	1206518	49407822	40946931	857	150335											
BRD7	29117	broad.mit.edu	37	chr16	50354564	50354564	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcaatcaaaccctctggAgacacttaccttcagagtca	6	12	5	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50354564	T	T	50354564	1	4	188	0	1	0	0	0	0	0	0	0	1514	319	11	5		5	BRD7	16	50354564	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	946742	50354564	40000189	858	150336											
MT1M	4499	broad.mit.edu	37	chr16	56667480	56667480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaaattcagatggggcaGgacagcatttttctcttggg	11	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56667480	T	T	56667480	1	4	188	0	1	0	0	0	0	0	0	0	9997	1015	35	2		2	MT1M	16	56667480	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6312916	56667480	33687273	859	150337											
CETP	1071	broad.mit.edu	37	chr16	57007458	57007458	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggctgctaggggatccagAtggcatgtggtatgtgtgtg	18	5	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57007458	T	T	57007458	1	4	188	0	1	0	0	0	0	0	0	0	3307	348	12	5		5	CETP	16	57007458	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	339978	57007458	33347295	860	150338											
CNOT1	23019	broad.mit.edu	37	chr16	58582519	58582519	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggggaatattcccatccaCaggtttaaatatagtgctgg	10	7	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58582519	G	G	58582519	1	3	188	0	1	0	0	0	0	0	0	0	3649	493	17	4		4	CNOT1	16	58582519	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1575061	58582519	31772234	861	150339											
NAE1	8883	broad.mit.edu	37	chr16	66850378	66850378	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtatttatttctaactaTacatttagaaaatattaact	2	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66850378	C	C	66850378	1	2	188	0	1	0	0	0	0	0	0	0	10233	1421	49	5		5	NAE1	16	66850378	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	8267859	66850378	23504375	862	150340											
CES3	23491	broad.mit.edu	37	chr16	67006076	67006076	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaattaaattaaaatgatgAcacaaagcacacagaatggt	6	5	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67006076	G	G	67006076	1	3	188	0	1	0	0	0	0	0	0	0	3301	290	10	5		5	CES3	16	67006076	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	155698	67006076	23348677	863	150341											
NFATC3	4775	broad.mit.edu	37	chr16	68156481	68156481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatcaacagtatggacttgGacactcattatcacccaggc	8	12	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68156481	T	T	68156481	3	4	188	1	0	0	0	0	1	0	0	0	10459	1174	41	3	701	3	NFATC3	16	68156481	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1150405	68156481	22198272	864	150342											
HYDIN	54768	broad.mit.edu	37	chr16	70841400	70841400	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaataaaaacagttccttTagaattcttattgttttctc	4	6	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70841400	A	A	70841400	1	1	188	0	1	0	0	0	0	0	0	0	7537	1769	61	5		5	HYDIN	16	70841400	3'UTR	SNP	T	TCGA-64-5775-01A-01D-1625-08	2684919	70841400	19513353	865	150343											
HYDIN	54768	broad.mit.edu	37	chr16	70908242	70908242	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccatatcattgtcctcgatGatctctgtgaactcagagat	7	10	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70908242	T	T	70908242	2	4	188	1	0	0	0	0	0	0	0	1	7537	1280	45	3		3	HYDIN	16	70908242	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	66842	70908242	19446511	866	150344											
HYDIN	54768	broad.mit.edu	37	chr16	70954439	70954439	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcacccctgatgaccttaGcacagcgcctgctgcctgac	9	16	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70954439	A	A	70954439	1	1	188	0	1	0	0	0	0	0	0	0	7537	986	34	4		4	HYDIN	16	70954439	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	46197	70954439	19400314	867	150345											
ZNF19	7567	broad.mit.edu	37	chr16	71512219	71512219	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctctctccaaaagtgagatCagtgcaggtttgggaactgg	12	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71512219	A	A	71512219	2	1	188	1	0	0	0	0	0	0	0	1	17881	813	29	3		3	ZNF19	16	71512219	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	557780	71512219	18842534	868	150346											
ZFHX3	463	broad.mit.edu	37	chr16	72991277	72991277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctattcaccattctccCtggttaaactcctatcatga	3	15	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72991277	A	A	72991277	1	1	188	0	1	0	0	0	0	0	0	0	17760	696	24	2		2	ZFHX3	16	72991277	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1479058	72991277	17363476	869	150347											
RFWD3	55159	broad.mit.edu	37	chr16	74685929	74685929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgcaactcttcagataCaggattcctagtctctgaat	6	12	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74685929	A	A	74685929	3	1	188	1	0	0	0	0	1	0	0	0	13369	478	17	3	1758	3	RFWD3	16	74685929	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1694652	74685929	15668824	870	150348											
LDHD	197257	broad.mit.edu	37	chr16	75149562	75149562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgcagagctctccctgCagggaagaaacacactgcca	9	15	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75149562	A	A	75149562	1	1	188	0	1	0	0	0	0	0	0	0	8775	725	25	3		3	LDHD	16	75149562	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	463633	75149562	15205191	871	150349											
BCMO1	53630	broad.mit.edu	37	chr16	81303679	81303679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagcctagctcctggcgGggctgggttttgttcagccc	14	13	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81303679	T	T	81303679	1	4	188	0	1	0	0	0	0	0	0	0	1389	1247	43	2		2	BCMO1	16	81303679	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6154117	81303679	9051074	872	150350											
PLCG2	5336	broad.mit.edu	37	chr16	81888159	81888159	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcaccatcctatatggcActcagttcgtcctcagcacg	7	15	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81888159	T	T	81888159	3	4	188	1	0	0	0	0	1	0	0	0	12131	159	6	5	310	5	PLCG2	16	81888159	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	584480	81888159	8466594	873	150351											
PLCG2	5336	broad.mit.edu	37	chr16	81925085	81925085	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactcttttagttcctcacGtacctgttttcacgagaaaa	6	10	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81925085	A	A	81925085	2	1	188	1	0	0	0	0	0	0	0	1	12131	1132	40	4		4	PLCG2	16	81925085	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	36926	81925085	8429668	874	150352											
SLC38A8	146167	broad.mit.edu	37	chr16	84067060	84067060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggcggggtgccagacaGgagggagtcacacactgcca	18	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84067060	T	T	84067060	3	4	188	1	0	0	0	0	1	0	0	0	14724	991	35	2	936	2	SLC38A8	16	84067060	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2141975	84067060	6287693	875	150353											
LRRC50	123872	broad.mit.edu	37	chr16	84193481	84193481	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attaaactttttaaatttctGattcttgagaaatttcacat	3	5	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84193481	A	A	84193481	1	1	188	0	1	0	0	0	0	0	0	0	9096	1305	45	4		4	LRRC50	16	84193481	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	126421	84193481	6161272	876	150354											
ADAD2	161931	broad.mit.edu	37	chr16	84230345	84230345	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggggaagccctacctccTggccttgaagacctacgagg	13	12	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84230345	G	G	84230345	3	3	188	1	0	0	0	0	1	0	0	0	232	1580	55	5	1903	5	ADAD2	16	84230345	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	36864	84230345	6124408	877	150355											
FOXC2	2303	broad.mit.edu	37	chr16	86601557	86601557	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acctagcggacgcccccaagGaggccgagaagaaggtggtg	16	11	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86601557	C	C	86601557	3	2	188	1	0	0	0	0	1	0	0	0	6053	1175	41	4	618	4	FOXC2	16	86601557	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2371212	86601557	3753196	878	150356											
DEF8	54849	broad.mit.edu	37	chr16	90032312	90032312	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacttgtcccaagtgtgccCggctcagcctgaggaagcag	12	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90032312	T	T	90032312	3	4	188	1	0	0	0	0	1	0	0	0	4420	643	23	4	1606	4	DEF8	16	90032312	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3430755	90032312	322441	879	150357											
ANKFY1	51479	broad.mit.edu	37	chr17	4126558	4126558	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catggtgacactgccttacaTgaactgagggaatcttcact	9	10	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4126558	A	A	4126558	1	1	188	0	1	0	0	0	0	0	0	0	626	1479	51	5		5	ANKFY1	17	4126558	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08		4126558	77068652	880	150358											
SLC16A13	201232	broad.mit.edu	37	chr17	6943341	6943341	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggtcttctcttgccaCgtcttggtctccacagaacc	7	16	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6943341	T	T	6943341	1	4	188	0	1	0	0	0	0	0	0	0	14519	551	19	4		4	SLC16A13	17	6943341	3'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	2816783	6943341	74251869	881	150359											
TP53	7157	broad.mit.edu	37	chr17	7577100	7577100	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctctgtgcgccggtctcTcccaggacaggcacaaacac	9	16	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7577100	C	C	7577100	3	2	188	1	0	0	0	0	1	0	0	0	16505	1559	54	5	448	5	TP53	17	7577100	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	633759	7577100	73618110	882	150360											
PIK3R6	146850	broad.mit.edu	37	chr17	8738820	8738820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggattgatagtaactaatGggagaggggccaccggatgg	17	5	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8738820	T	T	8738820	1	4	188	0	1	0	0	0	0	0	0	0	12018	1363	47	2		2	PIK3R6	17	8738820	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1161720	8738820	72456390	883	150361											
USP43	124739	broad.mit.edu	37	chr17	9613391	9613391	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcctgttctatcagaagcgGaacagcatccctccctggtc	8	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9613391	T	T	9613391	2	4	188	1	0	0	0	0	0	0	0	1	17201	1161	41	3		3	USP43	17	9613391	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	874571	9613391	71581819	884	150362											
MYH13	8735	broad.mit.edu	37	chr17	10263396	10263396	+	Intron	DEL	T	-	-													cccggattctccgctgccaaTttaaaagtaaacgggataaa							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10263396	-	-	10263396	6	5	188	0	1	1	0	1	0	0	0	0	10126	1508	52	0		0	MYH13	17	10263396	Intron	DEL	T	TCGA-64-5775-01A-01D-1625-08	650005	10263396	70931814	885	150363											
MYH1	4619	broad.mit.edu	37	chr17	10399523	10399523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcagggttgcaggcacccCaattgtcctgggatcatctg	11	11	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10399523	A	A	10399523	1	1	188	0	1	0	0	0	0	0	0	0	10123	609	21	2		2	MYH1	17	10399523	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	136127	10399523	70795687	886	150364											
MYH3	4621	broad.mit.edu	37	chr17	10533279	10533279	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgagaaagtgggaatgtCactggagaggagggggcaga	19	3	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10533279	T	T	10533279	1	4	188	0	1	0	0	0	0	0	0	0	10130	841	29	4		4	MYH3	17	10533279	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	133756	10533279	70661931	887	150365											
DNAH9	1770	broad.mit.edu	37	chr17	11713435	11713435	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagccctcccccagcttccCattgtcaccttactttaatt	3	16	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11713435	A	A	11713435	1	1	188	0	1	0	0	0	0	0	0	0	4648	609	21	2		2	DNAH9	17	11713435	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1180156	11713435	69481775	888	150366											
AKAP10	11216	broad.mit.edu	37	chr17	19861631	19861631	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagacgctgtagtttcatgCtttttagatggagagacagg	12	5	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19861631	A	A	19861631	3	1	188	1	0	0	0	0	1	0	0	0	446	796	28	3	1463	3	AKAP10	17	19861631	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	8148196	19861631	61333579	889	150367											
UNC45B	146862	broad.mit.edu	37	chr17	33491042	33491042	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcctgaaggttgtgggGcaggttccagatctgccatc	13	9	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33491042	T	T	33491042	2	4	188	1	0	0	0	0	0	0	0	1	17115	1190	42	3		3	UNC45B	17	33491042	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	13629411	33491042	47704168	890	150368											
UNC45B	146862	broad.mit.edu	37	chr17	33501393	33501393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagctgctggccaggtggGgctgcagtgggccaaggctt	19	9	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33501393	T	T	33501393	1	4	188	0	1	0	0	0	0	0	0	0	17115	1247	43	2		2	UNC45B	17	33501393	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	10351	33501393	47693817	891	150369											
MYO19	80179	broad.mit.edu	37	chr17	34862281	34862281	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccaagcacctcccatcagCacatcagacccaccttgaac	4	18	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34862281	T	T	34862281	1	4	188	0	1	0	0	0	0	0	0	0	10161	725	25	4		4	MYO19	17	34862281	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1360888	34862281	46332929	892	150370											
ERBB2	2064	broad.mit.edu	37	chr17	37865605	37865605	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcttgatccagcggaaCccccagctctgctaccagga	12	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37865605	T	T	37865605	2	4	188	1	0	0	0	0	0	0	0	1	5248	506	18	4		4	ERBB2	17	37865605	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	3003324	37865605	43329605	893	150371											
KRT23	25984	broad.mit.edu	37	chr17	39092632	39092632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgttgagattctgcatgGtggccttcccatttccgcct	11	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39092632	T	T	39092632	3	4	188	1	0	0	0	0	1	0	0	0	8531	1261	44	3	1076	3	KRT23	17	39092632	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1227027	39092632	42102578	894	150372											
KAT2A	2648	broad.mit.edu	37	chr17	40271406	40271406	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacatgagtggtttcgtaGcgggggaggctatcacagct	15	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40271406	A	A	40271406	2	1	188	1	0	0	0	0	0	0	0	1	8051	958	34	4		4	KAT2A	17	40271406	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1178774	40271406	40923804	895	150373											
MPP3	4356	broad.mit.edu	37	chr17	41909256	41909256	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggggaggtacttaccagagtCctccgatagcactggcatgc	13	11	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41909256	G	G	41909256	3	3	188	1	0	0	0	0	1	0	0	0	9829	855	30	4	1810	4	MPP3	17	41909256	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1637850	41909256	39285954	896	150374											
MAPT	4137	broad.mit.edu	37	chr17	44055855	44055855	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgggggttggggggagggAcatggggtgggctctgccct	22	7	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44055855	T	T	44055855	1	4	188	0	1	0	0	0	0	0	0	0	9389	290	10	5		5	MAPT	17	44055855	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	2146599	44055855	37139355	897	150375											
OSBPL7	114881	broad.mit.edu	37	chr17	45893993	45893993	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgggtggcagcccacgGgtgcccgaggagtcccgaga	17	12	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45893993	A	A	45893993	2	1	188	1	0	0	0	0	0	0	0	1	11376	1219	43	4		4	OSBPL7	17	45893993	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1838138	45893993	35301217	898	150376											
KIF2B	84643	broad.mit.edu	37	chr17	51900573	51900573	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattgggtcacggtagagtGggtggagaaagcagtcaaaa	15	5	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51900573	T	T	51900573	3	4	188	1	0	0	0	0	1	0	0	0	8368	1357	47	2	181	2	KIF2B	17	51900573	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	6006580	51900573	29294637	899	150377											
MMD	23531	broad.mit.edu	37	chr17	53471758	53471758	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaatggcgtagtaatgCactgcagctgccgtggccac	11	12	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53471758	A	A	53471758	2	1	188	1	0	0	0	0	0	0	0	1	9736	697	25	3		3	MMD	17	53471758	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1571185	53471758	27723452	900	150378											
LPO	4025	broad.mit.edu	37	chr17	56343529	56343529	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtggaattgatcctcTggtgcggggcctgctggcca	17	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56343529	A	A	56343529	3	1	188	1	0	0	0	0	1	0	0	0	9009	1580	55	5	1573	5	LPO	17	56343529	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	2871771	56343529	24851681	901	150379											
MPO	4353	broad.mit.edu	37	chr17	56358133	56358133	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccatctctcttctcctgGgctgctcaatccccctttgt	5	19	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56358133	A	A	56358133	1	1	188	0	1	0	0	0	0	0	0	0	9826	1247	43	4		4	MPO	17	56358133	5'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	14604	56358133	24837077	902	150380											
SCN4A	6329	broad.mit.edu	37	chr17	62018356	62018356	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctcaggggcgtcatcCccgctgccgtcgtggctgtg	13	15	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62018356	A	A	62018356	2	1	188	1	0	0	0	0	0	0	0	1	14033	610	22	2		2	SCN4A	17	62018356	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	5660223	62018356	19176854	903	150381											
ABCA9	10350	broad.mit.edu	37	chr17	66986908	66986908	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtgtttttcgaaaactaAacttagaaagtttctcactt	5	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66986908	G	G	66986908	1	3	188	0	1	0	0	0	0	0	0	0	39	29	1	5		5	ABCA9	17	66986908	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	4968552	66986908	14208302	904	150382											
ABCA10	10349	broad.mit.edu	37	chr17	67145072	67145072	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagttctaagaatacctaagTaagagaaaataaaaaagata	7	3	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67145072	A	A	67145072	1	1	188	0	1	0	0	0	0	0	0	0	29	1653	57	5		5	ABCA10	17	67145072	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	158164	67145072	14050138	905	150383											
DNAI2	64446	broad.mit.edu	37	chr17	72283023	72283024	+	Intron	DNP	CT	AG	AG													tggatgggaaaagcccctggCtatgtcctgtccctcccaga							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	72283024	AG	AG	72283023	1	1	188	0	1	0	0	0	0	0	0	0	4650	812	28	3		3	DNAI2	17	72283023	Intron	DNP	CT	TCGA-64-5775-01A-01D-1625-08	5137951	72283023	8912187	906	150384											
MGAT5B	146664	broad.mit.edu	37	chr17	74936290	74936290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggggaagtgcttgcccGtggcacaagatgttctgggc	17	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74936290	T	T	74936290	1	4	188	0	1	0	0	0	0	0	0	0	9642	1160	40	3		3	MGAT5B	17	74936290	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2653267	74936290	6258920	907	150385											
AFMID	125061	broad.mit.edu	37	chr17	76198623	76198623	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaagagcctgctgcatgtCccctatggagacggcgaagg	15	10	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76198623	T	T	76198623	2	4	188	1	0	0	0	0	0	0	0	1	362	842	30	4		4	AFMID	17	76198623	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1262333	76198623	4996587	908	150386											
RNF213	57674	broad.mit.edu	37	chr17	78350335	78350335	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctggccttctccccagccAccatggcggtaagagtaggc	11	14	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78350335	C	C	78350335	3	2	188	1	0	0	0	0	1	0	0	0	13588	159	6	5	13941	5	RNF213	17	78350335	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	2151712	78350335	2844875	909	150387											
B3GNTL1	146712	broad.mit.edu	37	chr17	81005899	81005902	+	Intron	DEL	TCTC	-	-													ccttccttccttcctctcttTctctctctctttctcttttt							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81005902	-	-	81005899	6	5	188	0	1	1	0	1	0	0	0	0	1270	1798	62	0		0	B3GNTL1	17	81005899	Intron	DEL	TCTC	TCGA-64-5775-01A-01D-1625-08	2655564	81005899	189311	910	150388											
ZFP161	7541	broad.mit.edu	37	chr18	5290892	5290892	+	Frame_Shift_Del	DEL	C	-	-													cgtctccagctgctgttctgCttccgcagccatcgctgccg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5290892	-	-	5290892	7	5	188	1	0	1	0	1	0	0	0	0	17766	797	28	0	38	0	ZFP161	18	5290892	Frame_Shift_Del	DEL	C	TCGA-64-5775-01A-01D-1625-08		5290892	72786356	911	150389											
LAMA1	284217	broad.mit.edu	37	chr18	6961967	6961967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtaaacagccttttctcaCtccataggaatttctgagta	6	10	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6961967	A	A	6961967	3	1	188	1	0	0	0	0	1	0	0	0	8677	565	20	3	1846	3	LAMA1	18	6961967	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1671075	6961967	71115281	912	150390											
RALBP1	10928	broad.mit.edu	37	chr18	9533746	9533746	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgaggagtactcctccgaGagcgagagcgagagtgagga	16	8	0	5			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9533746	T	T	9533746	3	4	188	1	0	0	0	0	1	0	0	0	13120	933	33	3	1653	3	RALBP1	18	9533746	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2571779	9533746	68543502	913	150391											
MC5R	4161	broad.mit.edu	37	chr18	13825668	13825668	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttctaggctagctgctgTctttctttggtaggctgcta	12	8	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13825668	C	C	13825668	1	2	188	0	1	0	0	0	0	0	0	0	9460	1682	58	5		5	MC5R	18	13825668	5'Flank	SNP	T	TCGA-64-5775-01A-01D-1625-08	4291922	13825668	64251580	914	150392											
ZNF519	162655	broad.mit.edu	37	chr18	14132260	14132260	+	Intron	DEL	C	-	-													cccagtctcggtacgccctgCcccccacactcaccatttct							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14132260	-	-	14132260	6	5	188	0	1	1	0	1	0	0	0	0	18091	754	26	0		0	ZNF519	18	14132260	Intron	DEL	C	TCGA-64-5775-01A-01D-1625-08	306592	14132260	63944988	915	150393											
ANKRD30B	374860	broad.mit.edu	37	chr18	14779955	14779956	+	Intron	INS	-	A	A													gtatctgtgattaacattttINStagatcagatgttcccatca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14779956	A	A	14779955	6	5	188	0	1	1	1	0	0	0	0	0	659	1856	64	0		0	ANKRD30B	18	14779955	Intron	INS	-	TCGA-64-5775-01A-01D-1625-08	647695	14779955	63297293	916	150394											
C18orf45	85019	broad.mit.edu	37	chr18	20953625	20953625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctggtcatacacccaggCttcagagaataaaagacact	7	10	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20953625	A	A	20953625	1	1	188	0	1	0	0	0	0	0	0	0	1921	812	28	3		3	C18orf45	18	20953625	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	6173670	20953625	57123623	917	150395											
TAF4B	6875	broad.mit.edu	37	chr18	23907165	23907165	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggtcagaggtggctttAtcgttggttgactgtcttgg	16	5	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23907165	T	T	23907165	1	4	188	0	1	0	0	0	0	0	0	0	15646	464	16	5		5	TAF4B	18	23907165	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	2953540	23907165	54170083	918	150396											
KLHL14	57565	broad.mit.edu	37	chr18	30322057	30322057	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaataaccacattactgtaGagtctttttagtggcaacga	8	7	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30322057	T	T	30322057	1	4	188	0	1	0	0	0	0	0	0	0	8441	957	33	3		3	KLHL14	18	30322057	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6414892	30322057	47755191	919	150397											
C18orf34	374864	broad.mit.edu	37	chr18	30903460	30903461	+	Missense_Mutation	DNP	GG	TT	TT													gcgaaaaattcttacttgtaGgcctctatggttttttcatc					rs142817345		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30903461	TT	TT	30903460	3	4	188	1	0	0	0	0	1	0	0	0	1920	987	35	2	1638	2	C18orf34	18	30903460	Missense_Mutation	DNP	GG	TCGA-64-5775-01A-01D-1625-08	581403	30903460	47173788	920	150398											
ASXL3	80816	broad.mit.edu	37	chr18	31324221	31324221	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccataaaccgatcaattcCgtgtaaagtcatcgttgacc	7	11	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324221	A	A	31324221	3	1	188	1	0	0	0	0	1	0	0	0	1072	652	23	1	4455	1	ASXL3	18	31324221	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	420761	31324221	46753027	921	150399											
FHOD3	80206	broad.mit.edu	37	chr18	34191968	34191968	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgacgtcgtggactgcctGgaggagctgggcattgctgc	16	10	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34191968	T	T	34191968	2	4	188	1	0	0	0	0	0	0	0	1	5940	1335	47	2		2	FHOD3	18	34191968	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2867747	34191968	43885280	922	150400											
PIK3C3	5289	broad.mit.edu	37	chr18	39535063	39535063	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaagcaagatggtgggcgCcttgtgcacatgcgcggaag	15	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39535063	A	A	39535063	1	1	188	0	1	0	0	0	0	0	0	0	12007	754	26	3		3	PIK3C3	18	39535063	5'Flank	SNP	C	TCGA-64-5775-01A-01D-1625-08	5343095	39535063	38542185	923	150401											
PIK3C3	5289	broad.mit.edu	37	chr18	39537583	39537583	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagttataaagctgtcctGgaagacccaatgttgaagtt	10	6	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39537583	T	T	39537583	2	4	188	1	0	0	0	0	0	0	0	1	12007	1335	47	2		2	PIK3C3	18	39537583	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2520	39537583	38539665	924	150402											
KIAA0427	9811	broad.mit.edu	37	chr18	46284908	46284908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgtacagggaagcaggGgcttcggtcactgtggggac	17	9	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46284908	T	T	46284908	1	4	188	0	1	0	0	0	0	0	0	0	8246	1247	43	2		2	KIAA0427	18	46284908	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6747325	46284908	31792340	925	150403											
WDR7	23335	broad.mit.edu	37	chr18	54687885	54687885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatctaatacccatgacGtaacttgttcaacattgaat	5	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54687885	T	T	54687885	1	4	188	0	1	0	0	0	0	0	0	0	17447	1160	40	3		3	WDR7	18	54687885	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	8402977	54687885	23389363	926	150404											
ALPK2	115701	broad.mit.edu	37	chr18	56247074	56247074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggttagggttatctctgGgcaaagttcatagtcactgt	12	6	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56247074	T	T	56247074	3	4	188	1	0	0	0	0	1	0	0	0	545	1232	43	2	5618	2	ALPK2	18	56247074	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1559189	56247074	21830174	927	150405											
ZNF532	55205	broad.mit.edu	37	chr18	56586014	56586014	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggtcgaatgtgttgacGgggtcggctccccagcagga	15	10	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56586014	T	T	56586014	2	4	188	1	0	0	0	0	0	0	0	1	18099	1103	39	1		1	ZNF532	18	56586014	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	338940	56586014	21491234	928	150406											
SERPINB12	89777	broad.mit.edu	37	chr18	61231116	61231116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcctgggagacaagagCgaaactctgtctcaaaaaaa	9	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61231116	A	A	61231116	1	1	188	0	1	0	0	0	0	0	0	0	14212	783	27	3		3	SERPINB12	18	61231116	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4645102	61231116	16846132	929	150407											
CDH7	1005	broad.mit.edu	37	chr18	63530152	63530152	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtgtcttgacattattGggtaggtactgtttccaggg	13	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63530152	C	C	63530152	3	2	188	1	0	0	0	0	1	0	0	0	3145	1362	47	4	1901	4	CDH7	18	63530152	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	2299036	63530152	14547096	930	150408											
RTTN	25914	broad.mit.edu	37	chr18	67684766	67684766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttagtaagtctagacagcCatcaagcctcagaatcattt	7	9	4	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67684766	A	A	67684766	3	1	188	1	0	0	0	0	1	0	0	0	13848	594	21	2	398	2	RTTN	18	67684766	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	4154614	67684766	10392482	931	150409											
ZNF236	7776	broad.mit.edu	37	chr18	74607043	74607043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagttccgcaagcccagcGacctggtccgccacatccgc	11	17	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74607043	T	T	74607043	3	4	188	1	0	0	0	0	1	0	0	0	17915	1058	37	3	1524	3	ZNF236	18	74607043	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	6922277	74607043	3470205	932	150410											
JSRP1	126306	broad.mit.edu	37	chr19	2255200	2255200	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcccgccagcgccacaagGgtacctgaagccctgtcctc	9	19	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2255200	A	A	2255200	1	1	188	0	1	0	0	0	0	0	0	0	8036	1247	43	4		4	JSRP1	19	2255200	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08		2255200	56873783	933	150411											
C19orf28	126321	broad.mit.edu	37	chr19	3551130	3551130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcccactcgggcgtggCcgccccacagcccaggcagg	15	18	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3551130	A	A	3551130	3	1	188	1	0	0	0	0	1	0	0	0	1936	739	26	3	1324	3	C19orf28	19	3551130	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1295930	3551130	55577853	934	150412											
MATK	4145	broad.mit.edu	37	chr19	3789352	3789352	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgtccctgcatgagaggGacatttaagatgctctagca	10	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3789352	T	T	3789352	1	4	188	0	1	0	0	0	0	0	0	0	9424	1189	41	3		3	MATK	19	3789352	5'Flank	SNP	G	TCGA-64-5775-01A-01D-1625-08	238222	3789352	55339631	935	150413											
TMEM146	257062	broad.mit.edu	37	chr19	5724880	5724881	+	Intron	DNP	GG	TT	TT													aggacgttcaaggggtatgtGgctccatgcttaaattcatc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	5724881	TT	TT	5724880	1	4	188	0	1	0	0	0	0	0	0	0	16183	1363	47	2		2	TMEM146	19	5724880	Intron	DNP	GG	TCGA-64-5775-01A-01D-1625-08	1935528	5724880	53404103	936	150414											
DUS3L	56931	broad.mit.edu	37	chr19	5788169	5788169	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcgcttgcagatccgtcGgaagggcaggttcccacact	13	12	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5788169	A	A	5788169	4	1	188	1	0	0	0	0	0	1	0	0	4847	1124	39	4	1027	4	DUS3L	19	5788169	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	63289	5788169	53340814	937	150415											
ACTL9	284382	broad.mit.edu	37	chr19	8808576	8808576	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctccactagcttctcgCggttggtggccgggctgaag	13	14	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8808576	T	T	8808576	3	4	188	1	0	0	0	0	1	0	0	0	203	768	27	4	778	4	ACTL9	19	8808576	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3020407	8808576	50320407	938	150416											
MUC16	94025	broad.mit.edu	37	chr19	9011493	9011493	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgccccattcttctcagGcctggggaaggaaggtggga	16	10	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9011493	T	T	9011493	3	4	188	1	0	0	0	0	1	0	0	0	10067	1217	42	3	4979	3	MUC16	19	9011493	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	202917	9011493	50117490	939	150417											
MUC16	94025	broad.mit.edu	37	chr19	9049248	9049248	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccaaactggtgaccattgAggtcaccaaccgtgatacag	10	12	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9049248	T	T	9049248	3	4	188	1	0	0	0	0	1	0	0	0	10067	304	11	5	11460	5	MUC16	19	9049248	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	37755	9049248	50079735	940	150418											
MUC16	94025	broad.mit.edu	37	chr19	9062525	9062525	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatgcccatcctgtctgtGgttatcaccaggccagggtt	10	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9062525	A	A	9062525	2	1	188	1	0	0	0	0	0	0	0	1	10067	1335	47	4		4	MUC16	19	9062525	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	13277	9062525	50066458	941	150419											
ATG4D	84971	broad.mit.edu	37	chr19	10657598	10657598	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggtaccatgggcctgccCgctggatgcccccacgctgg	14	17	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10657598	T	T	10657598	3	4	188	1	0	0	0	0	1	0	0	0	1103	652	23	4	591	4	ATG4D	19	10657598	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1595073	10657598	48471385	942	150420											
CACNA1A	773	broad.mit.edu	37	chr19	13363949	13363949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagtagcaggggtcagCgagcaggggtgggaagtggg	23	5	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13363949	A	A	13363949	1	1	188	0	1	0	0	0	0	0	0	0	2564	783	27	3		3	CACNA1A	19	13363949	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2706351	13363949	45765034	943	150421											
PKN1	5585	broad.mit.edu	37	chr19	14578614	14578614	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattttgggaaggtgaggtgGagggcagggaattgggagac	20	3	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14578614	T	T	14578614	1	4	188	0	1	0	0	0	0	0	0	0	12074	1189	41	3		3	PKN1	19	14578614	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1214665	14578614	44550369	944	150422											
HAUS8	93323	broad.mit.edu	37	chr19	17170921	17170921	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttaagaaaagaatccCcgaaagtcagcacagtcaag	9	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17170921	A	A	17170921	1	1	188	0	1	0	0	0	0	0	0	0	7038	638	22	2		2	HAUS8	19	17170921	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2592307	17170921	41958062	945	150423											
MYO9B	4650	broad.mit.edu	37	chr19	17317262	17317262	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtgaccagcccaggagGcaggaccacccagttcacaa	11	15	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17317262	T	T	17317262	1	4	188	0	1	0	0	0	0	0	0	0	10179	1218	42	3		3	MYO9B	19	17317262	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	146341	17317262	41811721	946	150424											
MAST3	23031	broad.mit.edu	37	chr19	18255441	18255441	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcggtggcagtggtggcgGcagtgggggccgcgtgccca	21	11	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18255441	A	A	18255441	3	1	188	1	0	0	0	0	1	0	0	0	9418	1203	42	4	2749	4	MAST3	19	18255441	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	938179	18255441	40873542	947	150425											
ZNF98	148198	broad.mit.edu	37	chr19	22575523	22575523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtatgtcctatcttatGtctgtttgaatttgaaaatt	6	6	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22575523	T	T	22575523	3	4	188	1	0	0	0	0	1	0	0	0	18332	1377	48	3	1208	3	ZNF98	19	22575523	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	4320082	22575523	36553460	948	150426											
ZNF91	7644	broad.mit.edu	37	chr19	23545576	23545576	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactccactcacctagactCacatgaatatagtttaaaaa	3	10	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23545576	A	A	23545576	1	1	188	0	1	0	0	0	0	0	0	0	18329	841	29	3		3	ZNF91	19	23545576	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	970053	23545576	35583407	949	150427											
CCNE1	898	broad.mit.edu	37	chr19	30303976	30303976	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggttgggcctctgtggaGgtccttctccccctgggtca	15	13	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30303976	T	T	30303976	1	4	188	0	1	0	0	0	0	0	0	0	2950	1015	35	2		2	CCNE1	19	30303976	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6758400	30303976	28825007	950	150428											
ZNF536	9745	broad.mit.edu	37	chr19	31040278	31040278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggcgggcctgccaaagcCggagcgggggccccagagcc	17	15	0	1	rs148378803		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31040278	A	A	31040278	3	1	188	1	0	0	0	0	1	0	0	0	18101	652	23	1	3762	1	ZNF536	19	31040278	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	736302	31040278	28088705	951	150429											
RYR1	6261	broad.mit.edu	37	chr19	38973578	38973578	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaacgcccagatgaggacCtacaaattggccccagagtt	9	12	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38973578	G	G	38973578	1	3	188	0	1	0	0	0	0	0	0	0	13879	696	24	4		4	RYR1	19	38973578	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	7933300	38973578	20155405	952	150430											
CYP2A7	1549	broad.mit.edu	37	chr19	41386406	41386406	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcgtgctccggatggcctcGatgaggaagcccgactcctc	13	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41386406	A	A	41386406	2	1	188	1	0	0	0	0	0	0	0	1	4196	1048	37	4		4	CYP2A7	19	41386406	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	2412828	41386406	17742577	953	150431											
PSG1	5669	broad.mit.edu	37	chr19	43371807	43371807	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatatcaattctcatgaatAgttgcccaattctggggcag	8	9	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43371807	T	T	43371807	1	4	188	0	1	0	0	0	0	0	0	0	12759	435	15	5		5	PSG1	19	43371807	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	1985401	43371807	15757176	954	150432											
PSG7	5676	broad.mit.edu	37	chr19	43433838	43433838	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcctccctggggttgaaAttgctgctggagatggaggg	18	7	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43433838	G	G	43433838	2	3	188	1	0	0	0	0	0	0	0	1	12766	98	4	5		5	PSG7	19	43433838	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	62031	43433838	15695145	955	150433											
PSG6	5675	broad.mit.edu	37	chr19	43579899	43579899	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccacccaagtccttaaaagCccatggcaggtgtgtgtgtt	10	12	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43579899	G	G	43579899	1	3	188	0	1	0	0	0	0	0	0	0	12765	754	26	4		4	PSG6	19	43579899	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	146061	43579899	15549084	956	150434											
PSG5	5673	broad.mit.edu	37	chr19	43688766	43688766	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggaaaggaattctgatctGttgaaatttgtctcctctgt	10	7	4	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43688766	T	T	43688766	1	4	188	0	1	0	0	0	0	0	0	0	12764	1392	48	3		3	PSG5	19	43688766	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	108867	43688766	15440217	957	150435											
ZNF230	7773	broad.mit.edu	37	chr19	44511178	44511178	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccaggcacaattccaccttCctttgtgctccattactcaa	4	15	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44511178	T	T	44511178	1	4	188	0	1	0	0	0	0	0	0	0	17910	870	30	4		4	ZNF230	19	44511178	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	822412	44511178	14617805	958	150436											
ZNF229	7772	broad.mit.edu	37	chr19	44934092	44934092	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattgacagagtttctctttCaaaggtactcttggatgcgg	10	7	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44934092	A	A	44934092	3	1	188	1	0	0	0	0	1	0	0	0	17908	825	29	3	1617	3	ZNF229	19	44934092	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	422914	44934092	14194891	959	150437											
MARK4	57787	broad.mit.edu	37	chr19	45775014	45775014	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagcccctccccacagtcAggcccctatcccccccacac	4	24	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45775014	T	T	45775014	1	4	188	0	1	0	0	0	0	0	0	0	9407	203	7	5		5	MARK4	19	45775014	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	840922	45775014	13353969	960	150438											
MEIS3	56917	broad.mit.edu	37	chr19	47912597	47912597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagacaacactccacaccCcagccatctctgcccctcta	3	21	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47912597	A	A	47912597	1	1	188	0	1	0	0	0	0	0	0	0	9562	638	22	2		2	MEIS3	19	47912597	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2137583	47912597	11216386	961	150439											
DKKL1	27120	broad.mit.edu	37	chr19	49877992	49877992	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtacccaggatggaggagAaggaggccctggtacccatc	15	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49877992	G	G	49877992	3	3	188	1	0	0	0	0	1	0	0	0	4588	247	9	5	454	5	DKKL1	19	49877992	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	1965395	49877992	9250991	962	150440											
GPR32	2854	broad.mit.edu	37	chr19	51274608	51274608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggagggctgggtccatGccaaccggcccaagaggctg	17	12	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51274608	T	T	51274608	3	4	188	1	0	0	0	0	1	0	0	0	6753	1319	46	3	753	3	GPR32	19	51274608	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	1396616	51274608	7854375	963	150441											
HAS1	3036	broad.mit.edu	37	chr19	52222568	52222568	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcgagtcctcaccagcGcctccactgccagccgccca	8	21	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52222568	T	T	52222568	3	4	188	1	0	0	0	0	1	0	0	0	7027	1087	38	3	1159	3	HAS1	19	52222568	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	947960	52222568	6906415	964	150442											
ZNF665	79788	broad.mit.edu	37	chr19	53669454	53669454	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttccactgacactcaaagtCgtatgtatttttctgaactt	5	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53669454	G	G	53669454	3	3	188	1	0	0	0	0	1	0	0	0	18200	884	31	4	1751	4	ZNF665	19	53669454	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1446886	53669454	5459529	965	150443											
CACNG8	59283	broad.mit.edu	37	chr19	54485474	54485474	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggctgtcgttcatcctggccGaggtgataggcgtgctggcc	16	11	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54485474	C	C	54485474	3	2	188	1	0	0	0	0	1	0	0	0	2589	1059	37	4	663	4	CACNG8	19	54485474	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	816020	54485474	4643509	966	150444											
LILRB5	10990	broad.mit.edu	37	chr19	54760174	54760174	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccaccacaggactcggCagggctaaaagagtgggttc	15	10	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54760174	A	A	54760174	2	1	188	1	0	0	0	0	0	0	0	1	8866	697	25	3		3	LILRB5	19	54760174	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	274700	54760174	4368809	967	150445											
KIR2DL3	3804	broad.mit.edu	37	chr19	55251995	55251995	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccctggtgatcgtggtcaTaggtcagagggctcctgtct	13	12	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55251995	A	A	55251995	1	1	188	0	1	0	0	0	0	0	0	0	8388	1421	49	5		5	KIR2DL3	19	55251995	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	491821	55251995	3876988	968	150446											
KIR2DL3	3804	broad.mit.edu	37	chr19	55263202	55263202	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcgctggtgctgcaacaaaAaaagtaagtctcacgaagca	9	9	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55263202	T	T	55263202	4	4	188	1	0	0	0	0	0	1	0	0	8388	15	1	5	839	5	KIR2DL3	19	55263202	Nonsense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	11207	55263202	3865781	969	150447											
C19orf51	352909	broad.mit.edu	37	chr19	55671298	55671298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaggagctggaatcggcCgttgtagcagctcttgtggt	15	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55671298	A	A	55671298	3	1	188	1	0	0	0	0	1	0	0	0	1952	652	23	1	505	1	C19orf51	19	55671298	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	408096	55671298	3457685	970	150448											
ZIM2	23619	broad.mit.edu	37	chr19	57286128	57286128	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgaggtatgagggtcgGccgaaacatttcccacatag	13	8	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57286128	A	A	57286128	2	1	188	1	0	0	0	0	0	0	0	1	17810	1190	42	4		4	ZIM2	19	57286128	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	1614830	57286128	1842855	971	150449											
ZNF773	374928	broad.mit.edu	37	chr19	58015998	58015998	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccccagtaaggagaccgcAgataaactcaactctgtcca	7	13	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58015998	T	T	58015998	1	4	188	0	1	0	0	0	0	0	0	0	18275	203	7	5		5	ZNF773	19	58015998	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	729870	58015998	1112985	972	150450											
ZNF549	256051	broad.mit.edu	37	chr19	58039059	58039059	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtctctgcagttcaggcctCttctccaggacagcgaggag	13	12	4	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58039059	T	T	58039059	1	4	188	0	1	0	0	0	0	0	0	0	18108	928	32	4		4	ZNF549	19	58039059	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	23061	58039059	1089924	973	150451											
ZNF416	55659	broad.mit.edu	37	chr19	58084849	58084849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttctctgcactatgatgCttctggtcctggtgaaagac	11	9	2	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58084849	T	T	58084849	2	4	188	1	0	0	0	0	0	0	0	1	18020	796	28	4		4	ZNF416	19	58084849	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	45790	58084849	1044134	974	150452											
ZNF671	79891	broad.mit.edu	37	chr19	58238788	58238788	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtccgttagctccgccatagGaccgtgggcgcggacagctg	15	13	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58238788	C	C	58238788	3	2	188	1	0	0	0	0	1	0	0	0	18205	1174	41	4	1511	4	ZNF671	19	58238788	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	153939	58238788	890195	975	150453											
ZNF497	162968	broad.mit.edu	37	chr19	58867550	58867550	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttctggtgctcgttgagGttgcaacggtggctgaaagg	16	8	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58867550	A	A	58867550	2	1	188	1	0	0	0	0	0	0	0	1	18073	1252	44	4		4	ZNF497	19	58867550	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	628762	58867550	261433	976	150454											
NSFL1C	55968	broad.mit.edu	37	chr20	1426548	1426548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagggaatcccttcttggaCtgttactgagcatttgcaat	10	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1426548	A	A	1426548	1	1	188	0	1	0	0	0	0	0	0	0	10767	580	20	3		3	NSFL1C	20	1426548	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08		1426548	61598972	977	150455											
SIRPG	55423	broad.mit.edu	37	chr20	1615854	1615854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttattttacagcaagtgtGgatattacttttaaaatgag	8	4	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1615854	T	T	1615854	1	4	188	0	1	0	0	0	0	0	0	0	14449	1363	47	2		2	SIRPG	20	1615854	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	189306	1615854	61409666	978	150456											
GPCPD1	56261	broad.mit.edu	37	chr20	5545813	5545813	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttagtgccaaaaaaaacagGgaaagagagagagagtgtgt	13	4	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5545813	A	A	5545813	1	1	188	0	1	0	0	0	0	0	0	0	6668	1247	43	4		4	GPCPD1	20	5545813	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3929959	5545813	57479707	979	150457											
HAO1	54363	broad.mit.edu	37	chr20	7875951	7875951	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaggcctccacattccagtCaaatggaggctgactcccat	9	13	1	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7875951	G	G	7875951	1	3	188	0	1	0	0	0	0	0	0	0	7017	841	29	4		4	HAO1	20	7875951	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2330138	7875951	55149569	980	150458											
PLCB1	23236	broad.mit.edu	37	chr20	8678238	8678238	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggtcatccttgcttcatGggaatctggggtttgttttg	12	8	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8678238	T	T	8678238	1	4	188	0	1	0	0	0	0	0	0	0	12122	1363	47	2		2	PLCB1	20	8678238	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	802287	8678238	54347282	981	150459											
CSRP2BP	57325	broad.mit.edu	37	chr20	18143374	18143374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccggtgctgttgccatgactCcggaagctcggagactgaaa	13	11	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18143374	T	T	18143374	3	4	188	1	0	0	0	0	1	0	0	0	4002	855	30	4	1478	4	CSRP2BP	20	18143374	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	9465136	18143374	44882146	982	150460											
RALGAPA2	57186	broad.mit.edu	37	chr20	20392911	20392911	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaaagtatcctgcaggttCtttaccatcttgcagaaaat	6	8	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20392911	G	G	20392911	1	3	188	0	1	0	0	0	0	0	0	0	13122	928	32	4		4	RALGAPA2	20	20392911	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	2249537	20392911	42632609	983	150461											
TTLL9	164395	broad.mit.edu	37	chr20	30475161	30475161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgaaaatgatagtagaaGgagtaatgctaaaccattat	8	3	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30475161	A	A	30475161	1	1	188	0	1	0	0	0	0	0	0	0	16860	1015	35	4		4	TTLL9	20	30475161	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	10082250	30475161	32550359	984	150462											
PLAGL2	5326	broad.mit.edu	37	chr20	30784196	30784196	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcatgggggacacagacgGggtgggtactaaggctccat	15	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30784196	A	A	30784196	1	1	188	0	1	0	0	0	0	0	0	0	12115	1247	43	4		4	PLAGL2	20	30784196	3'UTR	SNP	G	TCGA-64-5775-01A-01D-1625-08	309035	30784196	32241324	985	150463											
DNMT3B	1789	broad.mit.edu	37	chr20	31388040	31388040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggagtccattgctgttgGaaccgtgaagcacgagggga	16	7	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31388040	T	T	31388040	3	4	188	1	0	0	0	0	1	0	0	0	4717	1174	41	3	1943	3	DNMT3B	20	31388040	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	603844	31388040	31637480	986	150464											
AHCY	191	broad.mit.edu	37	chr20	32878141	32878141	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcgggagcttctcacctgCggcttgatgttcaccttctc	11	13	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32878141	T	T	32878141	2	4	188	1	0	0	0	0	0	0	0	1	409	755	27	4		4	AHCY	20	32878141	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1490101	32878141	30147379	987	150465											
C20orf152	140894	broad.mit.edu	37	chr20	34596256	34596256	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agatttaaggaattccagatCaaatcatatcctctgcaaga	6	8	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34596256	A	A	34596256	2	1	188	1	0	0	0	0	0	0	0	1	2114	816	29	3		3	C20orf152	20	34596256	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	1718115	34596256	28429264	988	150466											
KIAA1755	85449	broad.mit.edu	37	chr20	36846581	36846581	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacagctttgccctggcaGtgccaccccctctaacgccc	7	20	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36846581	T	T	36846581	1	4	188	0	1	0	0	0	0	0	0	0	8327	1044	36	3		3	KIAA1755	20	36846581	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2250325	36846581	26178939	989	150467											
FAM83D	81610	broad.mit.edu	37	chr20	37576623	37576623	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgttgattgatggcatccgCgtggcaacaggctcctacag	12	11	0	2	rs77993973	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37576623	G	G	37576623	2	3	188	1	0	0	0	0	0	0	0	1	5689	755	27	4		4	FAM83D	20	37576623	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	730042	37576623	25448897	990	150468											
PTPRT	11122	broad.mit.edu	37	chr20	40713580	40713580	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgcagcatcatggtggaaGacagaccaaatgggatctaa	11	8	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40713580	T	T	40713580	1	4	188	0	1	0	0	0	0	0	0	0	12920	957	33	3		3	PTPRT	20	40713580	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	3136957	40713580	22311940	991	150469											
PTPRT	11122	broad.mit.edu	37	chr20	41101018	41101018	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggcctcgcagggtgtaGtgggaggaggtctggatgac	19	8	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41101018	T	T	41101018	3	4	188	1	0	0	0	0	1	0	0	0	12920	1020	36	3	3144	3	PTPRT	20	41101018	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	387438	41101018	21924502	992	150470											
PABPC1L	80336	broad.mit.edu	37	chr20	43552898	43552898	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaattaccagtgcgaagGtgaggactgggggcacctcc	15	9	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43552898	T	T	43552898	5	4	188	1	0	0	0	0	0	0	1	0	11458	1275	44	3	999	3	PABPC1L	20	43552898	Splice_Site	SNP	G	TCGA-64-5775-01A-01D-1625-08	2451880	43552898	19472622	993	150471											
ARFGEF2	10564	broad.mit.edu	37	chr20	47607618	47607618	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctcttgctcgcttctcCctactcacagccagctccag	7	18	3	0	rs146960510		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47607618	T	T	47607618	2	4	188	1	0	0	0	0	0	0	0	1	855	610	22	4		4	ARFGEF2	20	47607618	Silent	SNP	C	TCGA-64-5775-01A-01D-1625-08	4054720	47607618	15417902	994	150472											
SLC9A8	23315	broad.mit.edu	37	chr20	48461680	48461680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactcaggcacacattggtGctttggtctggacagtttct	11	9	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48461680	T	T	48461680	1	4	188	0	1	0	0	0	0	0	0	0	14834	1334	46	3		3	SLC9A8	20	48461680	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	854062	48461680	14563840	995	150473											
ATP9A	10079	broad.mit.edu	37	chr20	50310572	50310572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtggggagcctctgcgtgCaggccacgggaagccgcagc	17	14	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50310572	A	A	50310572	3	1	188	1	0	0	0	0	1	0	0	0	1202	710	25	3	2614	3	ATP9A	20	50310572	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1848892	50310572	12714948	996	150474											
BMP7	655	broad.mit.edu	37	chr20	55758795	55758795	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctgccacgttggccatcCgcagggcttcctggttcttg	11	14	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55758795	T	T	55758795	3	4	188	1	0	0	0	0	1	0	0	0	1471	652	23	4	370	4	BMP7	20	55758795	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	5448223	55758795	7266725	997	150475											
SPO11	23626	broad.mit.edu	37	chr20	55904856	55904856	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaaagcgcgggaaaggcaCgcagccacgccccaagggcg	15	14	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55904856	G	G	55904856	1	3	188	0	1	0	0	0	0	0	0	0	15195	551	19	4		4	SPO11	20	55904856	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	146061	55904856	7120664	998	150476											
SPO11	23626	broad.mit.edu	37	chr20	55906779	55906779	+	Intron	DEL	A	-	-													caccccaattacctagtcttAaaaaagaataaaataaaaag							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55906779	-	-	55906779	6	5	188	0	1	1	0	1	0	0	0	0	15195	377	13	0		0	SPO11	20	55906779	Intron	DEL	A	TCGA-64-5775-01A-01D-1625-08	1923	55906779	7118741	999	150477											
CTCFL	140690	broad.mit.edu	37	chr20	56094399	56094399	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacattctagaagaggtgaaCatgcagacatcacagtggaa	11	7	2	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56094399	T	T	56094399	3	4	188	1	0	0	0	0	1	0	0	0	4035	478	17	4	1234	4	CTCFL	20	56094399	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	187620	56094399	6931121	1000	150478											
PCK1	5105	broad.mit.edu	37	chr20	56139537	56139537	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctttctctgtcttataGgggaaccttgtgcccacccc	9	14	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56139537	T	T	56139537	5	4	188	1	0	0	0	0	0	0	1	0	11675	1014	35	2	1212	2	PCK1	20	56139537	Splice_Site	SNP	G	TCGA-64-5775-01A-01D-1625-08	45138	56139537	6885983	1001	150479											
SYCP2	10388	broad.mit.edu	37	chr20	58476868	58476868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttctttgattctctcactGtatagaaacaacactgatta	5	9	3	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58476868	T	T	58476868	1	4	188	0	1	0	0	0	0	0	0	0	15551	1392	48	3		3	SYCP2	20	58476868	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2337331	58476868	4548652	1002	150480											
YTHDF1	54915	broad.mit.edu	37	chr20	61834033	61834033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggaaggcgctgtccaggCgcttgttgccgtgctctgtg	16	11	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61834033	A	A	61834033	3	1	188	1	0	0	0	0	1	0	0	0	17625	768	27	3	428	3	YTHDF1	20	61834033	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3357165	61834033	1191487	1003	150481											
MYT1	4661	broad.mit.edu	37	chr20	62850370	62850370	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaacctcagcacgaagccAcaggacctccccagcaaggt	10	15	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62850370	T	T	62850370	2	4	188	1	0	0	0	0	0	0	0	1	10200	146	6	5		5	MYT1	20	62850370	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	1016337	62850370	175150	1004	150482											
MYT1	4661	broad.mit.edu	37	chr20	62853402	62853402	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagaaggagctgctcacgTaagtccctgtttggctggca	12	9	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62853402	G	G	62853402	5	3	188	1	0	0	0	0	0	0	1	0	10200	1652	57	5	2444	5	MYT1	20	62853402	Splice_Site	SNP	T	TCGA-64-5775-01A-01D-1625-08	3032	62853402	172118	1005	150483											
TPTE	7179	broad.mit.edu	37	chr21	10920104	10920104	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaaggagtttttactcCctgaaatttttcgctgtggg	11	7	0	2	rs142165446		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10920104	A	A	10920104	4	1	188	1	0	0	0	0	0	1	0	0	16554	632	22	2	529	2	TPTE	21	10920104	Nonsense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08		10920104	37209791	1006	150484											
TPTE	7179	broad.mit.edu	37	chr21	10920240	10920240	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attaggtacccttagtgtttCtacgcccaccttctttccta	5	13	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10920240	A	A	10920240	1	1	188	0	1	0	0	0	0	0	0	0	16554	928	32	3		3	TPTE	21	10920240	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	136	10920240	37209655	1007	150485											
TPTE	7179	broad.mit.edu	37	chr21	10951465	10951465	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaataaataaataaatgcAaagataaaggggcatttgtc	7	3	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10951465	C	C	10951465	1	2	188	0	1	0	0	0	0	0	0	0	16554	145	5	5		5	TPTE	21	10951465	Intron	SNP	A	TCGA-64-5775-01A-01D-1625-08	31225	10951465	37178430	1008	150486											
TMPRSS15	5651	broad.mit.edu	37	chr21	19756051	19756051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacattttcatctgacaccCactgggcaaagaaaaggtca	7	10	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19756051	A	A	19756051	3	1	188	1	0	0	0	0	1	0	0	0	16369	595	21	2	2758	2	TMPRSS15	21	19756051	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	8804586	19756051	28373844	1009	150487											
APP	351	broad.mit.edu	37	chr21	27354853	27354853	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caacaacagaataatccactCgtttaatagaaagccgtatt	5	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27354853	A	A	27354853	1	1	188	0	1	0	0	0	0	0	0	0	817	899	31	3		3	APP	21	27354853	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	7598802	27354853	20775042	1010	150488											
KRTAP12-1	353332	broad.mit.edu	37	chr21	46102028	46102028	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcccgaggagcagctgGtgtggcacatggtggcgtgt	19	9	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46102028	A	A	46102028	3	1	188	1	0	0	0	0	1	0	0	0	8589	1261	44	4	283	4	KRTAP12-1	21	46102028	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	18747175	46102028	2027867	1011	150489											
COL18A1	80781	broad.mit.edu	37	chr21	46912666	46912666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgcatgctgcccggctGgggaggggtctccacctggt	17	12	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46912666	T	T	46912666	1	4	188	0	1	0	0	0	0	0	0	0	3707	1363	47	2		2	COL18A1	21	46912666	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	810638	46912666	1217229	1012	150490											
IL17RA	23765	broad.mit.edu	37	chr22	17578876	17578876	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggggattctccctgcCtccaagtggctctcccagtc	10	17	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17578876	T	T	17578876	1	4	188	0	1	0	0	0	0	0	0	0	7709	696	24	4		4	IL17RA	22	17578876	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08		17578876	33725690	1013	150491											
ZNF280B	140883	broad.mit.edu	37	chr22	22843330	22843330	+	Frame_Shift_Del	DEL	G	-	-													agagttattaggcacaacttGtggtgaactatttctataat							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22843330	-	-	22843330	7	5	188	1	0	1	0	1	0	0	0	0	17941	1386	48	0	1241	0	ZNF280B	22	22843330	Frame_Shift_Del	DEL	G	TCGA-64-5775-01A-01D-1625-08	5264454	22843330	28461236	1014	150492											
PIWIL3	440822	broad.mit.edu	37	chr22	25123945	25123945	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcattggtacttgcaaCaaatcctgctattgatttct	6	9	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25123945	T	T	25123945	3	4	188	1	0	0	0	0	1	0	0	0	12054	478	17	4	664	4	PIWIL3	22	25123945	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2280615	25123945	26180621	1015	150493											
CRYBA4	1413	broad.mit.edu	37	chr22	27018633	27018633	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggagggggtgttcagggGgtatggggagggttcaggtc	24	3	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27018633	A	A	27018633	1	1	188	0	1	0	0	0	0	0	0	0	3941	1247	43	4		4	CRYBA4	22	27018633	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	1894688	27018633	24285933	1016	150494											
CRYBA4	1413	broad.mit.edu	37	chr22	27021632	27021632	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggaggcccaagcccctcaTgtgggcacttcggaatcaaa	13	12	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27021632	C	C	27021632	1	2	188	0	1	0	0	0	0	0	0	0	3941	1479	51	5		5	CRYBA4	22	27021632	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2999	27021632	24282934	1017	150495											
CHEK2	11200	broad.mit.edu	37	chr22	29121263	29121263	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgtttcttgctgtatgTtcggtatttatctgttcttt	8	5	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29121263	C	C	29121263	3	2	188	1	0	0	0	0	1	0	0	0	3366	1725	60	5	1271	5	CHEK2	22	29121263	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	2099631	29121263	22183303	1018	150496											
EWSR1	2130	broad.mit.edu	37	chr22	29664192	29664192	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaagcggtggttcatccCtcctgaccccacccccgtgg	11	16	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29664192	A	A	29664192	1	1	188	0	1	0	0	0	0	0	0	0	5338	696	24	2		2	EWSR1	22	29664192	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	542929	29664192	21640374	1019	150497											
C22orf28	51493	broad.mit.edu	37	chr22	32804073	32804073	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctgtccaaaggtcattgtCtaaatgacaccactatcagg	9	10	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32804073	A	A	32804073	1	1	188	0	1	0	0	0	0	0	0	0	2162	928	32	3		3	C22orf28	22	32804073	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	3139881	32804073	18500493	1020	150498											
LGALS2	3957	broad.mit.edu	37	chr22	37966684	37966684	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaatggtggattcgctgaAgcgagggttgaaatgcaggt	16	5	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37966684	T	T	37966684	3	4	188	1	0	0	0	0	1	0	0	0	8814	72	3	5	258	5	LGALS2	22	37966684	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	5162611	37966684	13337882	1021	150499											
CACNA1I	8911	broad.mit.edu	37	chr22	40055719	40055719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcctcacccaggaggaCtggaacgtcgttctctacaa	9	13	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40055719	A	A	40055719	3	1	188	1	0	0	0	0	1	0	0	0	2572	564	20	3	2520	3	CACNA1I	22	40055719	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	2089035	40055719	11248847	1022	150500											
EFCAB6	64800	broad.mit.edu	37	chr22	44107437	44107437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttagataattaaaagacaCgtagccacctttacaggggt	8	8	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44107437	A	A	44107437	3	1	188	1	0	0	0	0	1	0	0	0	4979	536	19	3	3648	3	EFCAB6	22	44107437	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	4051718	44107437	7197129	1023	150501											
BRD1	23774	broad.mit.edu	37	chr22	50192297	50192297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagcaccgtcagcgggGtcagccgcagctccatggcg	15	15	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50192297	A	A	50192297	3	1	188	1	0	0	0	0	1	0	0	0	1510	1261	44	4	1518	4	BRD1	22	50192297	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	6084860	50192297	1112269	1024	150502											
CSF2RA	1438	broad.mit.edu	37	chrX	1419441	1419441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaagctctgagcccagaGcaaaacacagtgtgaagatc	9	11	1	4			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1419441	T	T	1419441	3	4	188	1	0	0	0	0	1	0	0	0	3968	971	34	3	898	3	CSF2RA	23	1419441	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08		1419441	153851119	1025	150503											
MXRA5	25878	broad.mit.edu	37	chrX	3229560	3229560	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcaccacgtagtcatcAccaaccttatttcgagctac	6	13	2	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3229560	T	T	3229560	2	4	188	1	0	0	0	0	0	0	0	1	10097	146	6	5		5	MXRA5	23	3229560	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	1810119	3229560	152041000	1026	150504											
VCX3B	425054	broad.mit.edu	37	chrX	8433434	8433434	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcgcgagaggtgtatataCagggaggccaggcagcctgg	17	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8433434	A	A	8433434	1	1	188	0	1	0	0	0	0	0	0	0	17272	493	17	3		3	VCX3B	23	8433434	5'UTR	SNP	C	TCGA-64-5775-01A-01D-1625-08	5203874	8433434	146837126	1027	150505											
ARHGAP6	395	broad.mit.edu	37	chrX	11682515	11682515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcggctactggctggcCcggccaggacagaaggcagg	16	13	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11682515	A	A	11682515	3	1	188	1	0	0	0	0	1	0	0	0	889	623	22	2	2664	2	ARHGAP6	23	11682515	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	3249081	11682515	143588045	1028	150506											
TLR7	51284	broad.mit.edu	37	chrX	12904999	12904999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtagaaagttatgaacccCaggtcctggaacaattacat	8	9	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12904999	A	A	12904999	3	1	188	1	0	0	0	0	1	0	0	0	16079	595	21	2	1378	2	TLR7	23	12904999	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1222484	12904999	142365561	1029	150507											
MAP3K15	389840	broad.mit.edu	37	chrX	19416298	19416298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtgggtatgggatctggGgtgtggagacggcacccgaa	20	7	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19416298	T	T	19416298	1	4	188	0	1	0	0	0	0	0	0	0	9341	1247	43	2		2	MAP3K15	23	19416298	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	6511299	19416298	135854262	1030	150508											
MAP7D2	256714	broad.mit.edu	37	chrX	20043601	20043601	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagtggagtcagcctctaGatttcctccaggggaccctc	11	12	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20043601	A	A	20043601	1	1	188	0	1	0	0	0	0	0	0	0	9360	957	33	4		4	MAP7D2	23	20043601	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	627303	20043601	135226959	1031	150509											
POLA1	5422	broad.mit.edu	37	chrX	24767091	24767091	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaccactggctgccttggtGacatacaaaggaagggaggt	13	8	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24767091	A	A	24767091	2	1	188	1	0	0	0	0	0	0	0	1	12282	1277	45	4		4	POLA1	23	24767091	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	4723490	24767091	130503469	1032	150510											
FAM47B	170062	broad.mit.edu	37	chrX	34962075	34962075	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaaccgaggaactcaccaAgcctggtaaataccattttt	7	11	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34962075	T	T	34962075	3	4	188	1	0	0	0	0	1	0	0	0	5621	72	3	5	1129	5	FAM47B	23	34962075	Missense_Mutation	SNP	A	TCGA-64-5775-01A-01D-1625-08	10194984	34962075	120308485	1033	150511											
CXorf59	286464	broad.mit.edu	37	chrX	36118072	36118072	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taattaaagtatagacaatgCtgctatgaaagattcaaaaa	6	4	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36118072	T	T	36118072	1	4	188	0	1	0	0	0	0	0	0	0	4148	812	28	4		4	CXorf59	23	36118072	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	1155997	36118072	119152488	1034	150512											
RPGR	6103	broad.mit.edu	37	chrX	38170068	38170068	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattagtgatgacatacataTgaacaaaaagctggtcttac	8	6	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38170068	A	A	38170068	1	1	188	0	1	0	0	0	0	0	0	0	13659	1479	51	5		5	RPGR	23	38170068	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	2051996	38170068	117100492	1035	150513											
USP9X	8239	broad.mit.edu	37	chrX	41026659	41026659	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgtttaagataactgaGgatatggtttgaatttaaat	10	1	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41026659	T	T	41026659	1	4	188	0	1	0	0	0	0	0	0	0	17217	1015	35	2		2	USP9X	23	41026659	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	2856591	41026659	114243901	1036	150514											
RBM10	8241	broad.mit.edu	37	chrX	47038768	47038768	+	Frame_Shift_Del	DEL	C	-	-													ggctggatcagcagacactgCcactgggtggccgggagctg							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47038768	-	-	47038768	7	5	188	1	0	1	0	1	0	0	0	0	13219	739	26	0	805	0	RBM10	23	47038768	Frame_Shift_Del	DEL	C	TCGA-64-5775-01A-01D-1625-08	6012109	47038768	108231792	1037	150515											
ZNF81	347344	broad.mit.edu	37	chrX	47775357	47775357	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcagagaattcatacaGgagagaggtcctatatctgt	10	7	3	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47775357	T	T	47775357	4	4	188	1	0	0	0	0	0	1	0	0	18303	1001	35	2	1326	2	ZNF81	23	47775357	Nonsense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	736589	47775357	107495203	1038	150516											
OTUD5	55593	broad.mit.edu	37	chrX	48791691	48791699	+	Intron	DEL	TGACCTCTA	-	-													cagactccaacagaggtttcTgacctctatatccagcagcc							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48791699	-	-	48791691	6	5	188	0	1	1	0	1	0	0	0	0	11409	1595	55	0		0	OTUD5	23	48791691	Intron	DEL	TGACCTCTA	TCGA-64-5775-01A-01D-1625-08	1016334	48791691	106478869	1039	150517											
KDM5C	8242	broad.mit.edu	37	chrX	53240964	53240964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actacctcagccctccatcaCctacatgcacgggcatgttg	7	16	2	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53240964	A	A	53240964	1	1	188	0	1	0	0	0	0	0	0	0	8205	522	18	3		3	KDM5C	23	53240964	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	4449273	53240964	102029596	1040	150518											
GDPD2	54857	broad.mit.edu	37	chrX	69646916	69646916	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtctgctcgtttgcaccaTagcgaccaggcctgtgggtt	14	11	1	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69646916	C	C	69646916	1	2	188	0	1	0	0	0	0	0	0	0	6388	1421	49	5		5	GDPD2	23	69646916	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	16405952	69646916	85623644	1041	150519											
TEX11	56159	broad.mit.edu	37	chrX	69830219	69830219	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaaccaaaatagattcctGtggcaaagattaataaggag	9	5	0	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69830219	C	C	69830219	1	2	188	0	1	0	0	0	0	0	0	0	15896	1392	48	4		4	TEX11	23	69830219	Intron	SNP	G	TCGA-64-5775-01A-01D-1625-08	183303	69830219	85440341	1042	150520											
CDX4	1046	broad.mit.edu	37	chrX	72667443	72667443	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactacagcaacttgggcccTgtgggcggtggaactagcgg	16	10	0	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72667443	C	C	72667443	2	2	188	1	0	0	0	0	0	0	0	1	3214	1567	55	5		5	CDX4	23	72667443	Silent	SNP	T	TCGA-64-5775-01A-01D-1625-08	2837224	72667443	82603117	1043	150521											
TBX22	50945	broad.mit.edu	37	chrX	79282284	79282284	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgttgacctgtcccagattCagtccttgcccactgaaggt	10	12	1	3			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79282284	G	G	79282284	3	3	188	1	0	0	0	0	1	0	0	0	15780	827	29	4	733	4	TBX22	23	79282284	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	6614841	79282284	75988276	1044	150522											
BRWD3	254065	broad.mit.edu	37	chrX	79936987	79936987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatagtgaaagcccttcagCagcatctgaaacttacattt	6	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79936987	A	A	79936987	3	1	188	1	0	0	0	0	1	0	0	0	1535	710	25	3	909	3	BRWD3	23	79936987	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	654703	79936987	75333573	1045	150523											
HDX	139324	broad.mit.edu	37	chrX	83591885	83591885	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggaacaacttcattgggcTcttctacagaaaaaaatgcc	7	10	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83591885	C	C	83591885	3	2	188	1	0	0	0	0	1	0	0	0	7093	1551	54	5	424	5	HDX	23	83591885	Missense_Mutation	SNP	T	TCGA-64-5775-01A-01D-1625-08	3654898	83591885	71678675	1046	150524											
CHM	1121	broad.mit.edu	37	chrX	85233835	85233835	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgctaagagcaatggcttCttcattttcaaggatctggt	9	9	4	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85233835	G	G	85233835	3	3	188	1	0	0	0	0	1	0	0	0	3381	922	32	4	1782	4	CHM	23	85233835	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	1641950	85233835	70036725	1047	150525											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177268	89177268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacttgccagccgagtccGttaagatcctccgcgactgg	11	13	0	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89177268	T	T	89177268	3	4	188	1	0	0	0	0	1	0	0	0	15950	1145	40	3	186	3	TGIF2LX	23	89177268	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	3943433	89177268	66093292	1048	150526											
ZMAT1	84460	broad.mit.edu	37	chrX	101153022	101153022	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatacctatgcacctgaaaTaggcacaatcttgttagaaa	6	9	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101153022	C	C	101153022	1	2	188	0	1	0	0	0	0	0	0	0	17817	1421	49	5		5	ZMAT1	23	101153022	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	11975754	101153022	54117538	1049	150527											
IL13RA2	3598	broad.mit.edu	37	chrX	114244002	114244002	+	Intron	DEL	C	-	-													ttctgtccctcacgtggatgCaactgattttggttctcaca							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114244002	-	-	114244002	6	5	188	0	1	1	0	1	0	0	0	0	7700	725	25	0		0	IL13RA2	23	114244002	Intron	DEL	C	TCGA-64-5775-01A-01D-1625-08	13090980	114244002	41026558	1050	150528											
ATP1B4	23439	broad.mit.edu	37	chrX	119504770	119504770	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgcacagcatgttcagcCtcaattaactttggctcttc	7	12	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119504770	A	A	119504770	1	1	188	0	1	0	0	0	0	0	0	0	1139	696	24	2		2	ATP1B4	23	119504770	Intron	SNP	C	TCGA-64-5775-01A-01D-1625-08	5260768	119504770	35765790	1051	150529											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299759	125299759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagatagtgcaccagcCtgcgacgcgtcgccggccgc	12	17	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299759	A	A	125299759	3	1	188	1	0	0	0	0	1	0	0	0	4298	681	24	2	1246	2	DCAF12L2	23	125299759	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	5794989	125299759	29970801	1052	150530											
ZNF449	203523	broad.mit.edu	37	chrX	134494750	134494750	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaggtgaaaaacctcatAgatgtcataattgtgggaaa	9	5	2	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134494750	C	C	134494750	2	2	188	1	0	0	0	0	0	0	0	1	18047	412	15	5		5	ZNF449	23	134494750	Silent	SNP	A	TCGA-64-5775-01A-01D-1625-08	9194991	134494750	20775810	1053	150531											
DDX26B	203522	broad.mit.edu	37	chrX	134655006	134655006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttggacattgccaaagGcgctgtggagttattcttga	11	6	1	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134655006	T	T	134655006	3	4	188	1	0	0	0	0	1	0	0	0	4386	1203	42	3	91	3	DDX26B	23	134655006	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	160256	134655006	20615554	1054	150532											
DDX26B	203522	broad.mit.edu	37	chrX	134709151	134709151	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgtttaaacaagataagaaGgtaggatacctatgcctatg	9	7	0	2			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134709151	C	C	134709151	3	2	188	1	0	0	0	0	1	0	0	0	4386	1014	35	4	1823	4	DDX26B	23	134709151	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	54145	134709151	20561409	1055	150533											
GPR112	139378	broad.mit.edu	37	chrX	135485469	135485469	+	Missense_Mutation	SNP	C	A	A													tctgtatggaactctgagccCaacaactccgttgtaagtac							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135485469	A	A	135485469	3	1	188	1	0	0	0	0	1	0	0	0	6694	594	21	2	8716	2	GPR112	23	135485469	Missense_Mutation	SNP	C	TCGA-64-5775-01A-01D-1625-08	776318	135485469	19785091	1056	150534	651	2									
GPR112	139378	broad.mit.edu	37	chrX	135485479	135485479	+	Silent	SNP	G	A	A													actctgagcccaacaactccGttgtaagtaccagcatctct							TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135485479	A	A	135485479	2	1	188	1	0	0	0	0	0	0	0	1	6694	1132	40	4		4	GPR112	23	135485479	Silent	SNP	G	TCGA-64-5775-01A-01D-1625-08	10	135485479	19785081	1057	150535	651	2									
CD40LG	959	broad.mit.edu	37	chrX	135738412	135738412	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctttccttttatataatcTatttttgcacagtctctatt	2	8	3	0			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135738412	C	C	135738412	1	2	188	0	1	0	0	0	0	0	0	0	3046	1537	53	5		5	CD40LG	23	135738412	Intron	SNP	T	TCGA-64-5775-01A-01D-1625-08	252933	135738412	19532148	1058	150536											
SPRY3	10251	broad.mit.edu	37	chrX	155003584	155003584	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaattctgcctattgaacaGctgcgctctactcatgctag	7	12	3	1			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155003584	C	C	155003584	3	2	188	1	0	0	0	0	1	0	0	0	15225	962	34	4	53	4	SPRY3	23	155003584	Missense_Mutation	SNP	G	TCGA-64-5775-01A-01D-1625-08	19265172	155003584	266976	1059	150537											
MEGF6	1953	broad.mit.edu	37	chr1	3511967	3511967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacctgagcacggtccggGcctccgtggtatacacctgc	12	15	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3511967	T	T	3511967	3	4	189	1	0	0	0	0	1	0	0	0	9555	1203	42	3	4454	3	MEGF6	1	3511967	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08		3511967	245738654	1	150538											
AJAP1	55966	broad.mit.edu	37	chr1	4829965	4829965	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctccctcatcatggtcatAgctgctctcatcacaactct	5	15	7	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4829965	T	T	4829965	2	4	189	1	0	0	0	0	0	0	0	1	438	410	15	5		5	AJAP1	1	4829965	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	1317998	4829965	244420656	2	150539											
NPHP4	261734	broad.mit.edu	37	chr1	5987882	5987882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagcagtgatggccactcCcttcatcagcacgcctatca	8	14	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5987882	A	A	5987882	1	1	189	0	1	0	0	0	0	0	0	0	10676	638	22	2		2	NPHP4	1	5987882	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1157917	5987882	243262739	3	150540											
TNFRSF9	3604	broad.mit.edu	37	chr1	7997840	7997840	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtattaaaaatgaaagcaatAataaaagggaagcattttca	7	3	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7997840	G	G	7997840	1	3	189	0	1	0	0	0	0	0	0	0	16423	377	13	5		5	TNFRSF9	1	7997840	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2009958	7997840	241252781	4	150541											
RERE	473	broad.mit.edu	37	chr1	8415473	8415473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccctcccagcaccccaCctcacctgtaataatcttcc	2	21	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8415473	A	A	8415473	1	1	189	0	1	0	0	0	0	0	0	0	13339	522	18	3		3	RERE	1	8415473	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	417633	8415473	240835148	5	150542											
H6PD	9563	broad.mit.edu	37	chr1	9324728	9324728	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacgagcccctcccagccaCaccgccgcatgagccttagc	8	21	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9324728	G	G	9324728	3	3	189	1	0	0	0	0	1	0	0	0	7002	478	17	4	2190	4	H6PD	1	9324728	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	909255	9324728	239925893	6	150543											
KIF1B	23095	broad.mit.edu	37	chr1	10363995	10363995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagcttttagacgtggaCgtctgcgctggatgaggcaa	13	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10363995	A	A	10363995	1	1	189	0	1	0	0	0	0	0	0	0	8354	536	19	3		3	KIF1B	1	10363995	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1039267	10363995	238886626	7	150544											
PLOD1	5351	broad.mit.edu	37	chr1	12017832	12017832	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acccactgggggcccagggaGatgtgagtcagggctatggc	17	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12017832	T	T	12017832	1	4	189	0	1	0	0	0	0	0	0	0	12196	957	33	3		3	PLOD1	1	12017832	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1653837	12017832	237232789	8	150545											
PLOD1	5351	broad.mit.edu	37	chr1	12018011	12018011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcattggggtgaggctgcGcccaggcctgtgcctgaggg	20	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12018011	T	T	12018011	1	4	189	0	1	0	0	0	0	0	0	0	12196	1102	38	3		3	PLOD1	1	12018011	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	179	12018011	237232610	9	150546											
PRAMEF12	390999	broad.mit.edu	37	chr1	12836280	12836280	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgaggaagtatggtgagCtttctctgcagaccgcagca	14	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12836280	G	G	12836280	1	3	189	0	1	0	0	0	0	0	0	0	12529	812	28	4		4	PRAMEF12	1	12836280	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	818269	12836280	236414341	10	150547											
CELA2A	63036	broad.mit.edu	37	chr1	15789207	15789207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctggaggtgaccctctcCctgggccccctttctcccag	9	19	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15789207	A	A	15789207	1	1	189	0	1	0	0	0	0	0	0	0	3241	638	22	2		2	CELA2A	1	15789207	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2952927	15789207	233461414	11	150548											
PLEKHM2	23207	broad.mit.edu	37	chr1	16057111	16057111	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggccccacgccctgccacTgctcaccccccgagggcacc	10	22	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16057111	A	A	16057111	3	1	189	1	0	0	0	0	1	0	0	0	12176	1580	55	5	2351	5	PLEKHM2	1	16057111	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	267904	16057111	233193510	12	150549											
TMCO4	255104	broad.mit.edu	37	chr1	20082238	20082238	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatgtggcaaacgaggactCtggcccgggcgtcatagtgc	14	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20082238	T	T	20082238	3	4	189	1	0	0	0	0	1	0	0	0	16121	913	32	4	1540	4	TMCO4	1	20082238	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	4025127	20082238	229168383	13	150550											
OTUD3	23252	broad.mit.edu	37	chr1	20216956	20216956	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcacagacaggagacagtGgactacatgataaagcagcg	12	8	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20216956	T	T	20216956	2	4	189	1	0	0	0	0	0	0	0	1	11407	1335	47	2		2	OTUD3	1	20216956	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	134718	20216956	229033665	14	150551											
CELA3B	23436	broad.mit.edu	37	chr1	22307458	22307458	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggccccgggcagctgGggagggtgggtgatgatggg	22	8	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22307458	C	C	22307458	1	2	189	0	1	0	0	0	0	0	0	0	3244	1247	43	4		4	CELA3B	1	22307458	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2090502	22307458	226943163	15	150552											
IL22RA1	58985	broad.mit.edu	37	chr1	24463712	24463712	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggcatagtagagctccgtGaggttgcccgtctccaccgt	12	13	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24463712	A	A	24463712	2	1	189	1	0	0	0	0	0	0	0	1	7743	1277	45	4		4	IL22RA1	1	24463712	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	2156254	24463712	224786909	16	150553											
RHCE	6006	broad.mit.edu	37	chr1	25717390	25717390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgacacttggccagaacatCcacaagaagagggcgcctgg	12	11	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25717390	A	A	25717390	3	1	189	1	0	0	0	0	1	0	0	0	13434	856	30	3	626	3	RHCE	1	25717390	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1253678	25717390	223533231	17	150554											
AHDC1	27245	broad.mit.edu	37	chr1	27877205	27877205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttggccatcttcaccacCatgcgccgcacgccccggca	8	19	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27877205	A	A	27877205	3	1	189	1	0	0	0	0	1	0	0	0	412	594	21	2	3393	2	AHDC1	1	27877205	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2159815	27877205	221373416	18	150555											
FGR	2268	broad.mit.edu	37	chr1	27939644	27939644	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttattcatgcctgaaggatgGgtctctgtcagtcaaaggga	12	7	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27939644	C	C	27939644	1	2	189	0	1	0	0	0	0	0	0	0	5931	1247	43	4		4	FGR	1	27939644	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	62439	27939644	221310977	19	150556											
COL16A1	1307	broad.mit.edu	37	chr1	32151634	32151634	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttcgaagtcgagcaagacGagtgtctatctaggaagctc	13	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32151634	T	T	32151634	1	4	189	0	1	0	0	0	0	0	0	0	3705	1073	37	3		3	COL16A1	1	32151634	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4211990	32151634	217098987	20	150557											
RBBP4	5928	broad.mit.edu	37	chr1	33116224	33116224	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactccgccccttggcgcaCacccttaaaggaccacactc	7	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33116224	A	A	33116224	1	1	189	0	1	0	0	0	0	0	0	0	13209	493	17	3		3	RBBP4	1	33116224	5'Flank	SNP	C	TCGA-64-5778-01A-01D-1625-08	964590	33116224	216134397	21	150558											
ZSCAN20	7579	broad.mit.edu	37	chr1	33945125	33945126	+	Missense_Mutation	DNP	GG	TT	TT													ctgggctctctgctgtcgttGgctgaggccggagatccgtc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	33945126	TT	TT	33945125	3	4	189	1	0	0	0	0	1	0	0	0	18361	1357	47	2	238	2	ZSCAN20	1	33945125	Missense_Mutation	DNP	GG	TCGA-64-5778-01A-01D-1625-08	828901	33945125	215305496	22	150559											
EPHA10	284656	broad.mit.edu	37	chr1	38227036	38227036	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctctcaattgccacctacGctctacactcccaccccacg	3	21	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38227036	C	C	38227036	1	2	189	0	1	0	0	0	0	0	0	0	5208	1102	38	4		4	EPHA10	1	38227036	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4281911	38227036	211023585	23	150560											
MACF1	23499	broad.mit.edu	37	chr1	39893130	39893130	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatatatttgtgtaggcaAaaacagctggaagacatcct	8	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39893130	G	G	39893130	2	3	189	1	0	0	0	0	0	0	0	1	9232	11	1	5		5	MACF1	1	39893130	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	1666094	39893130	209357491	24	150561											
PABPC4	8761	broad.mit.edu	37	chr1	40027305	40027305	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcaaaccacaaagacaaTgctcataggaacaatgctca	7	10	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40027305	C	C	40027305	1	2	189	0	1	0	0	0	0	0	0	0	11460	1479	51	5		5	PABPC4	1	40027305	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	134175	40027305	209223316	25	150562											
YBX1	4904	broad.mit.edu	37	chr1	43162350	43162350	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttacaggtcctggtggtgTtccagttcaaggcagtaaat	12	7	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43162350	C	C	43162350	3	2	189	1	0	0	0	0	1	0	0	0	17596	1725	60	5	410	5	YBX1	1	43162350	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	3135045	43162350	206088271	26	150563											
YBX1	4904	broad.mit.edu	37	chr1	43166670	43166670	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccgctcccgaggctgagcAgggcggggctgagtaaatgc	17	11	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43166670	T	T	43166670	3	4	189	1	0	0	0	0	1	0	0	0	17596	188	7	5	985	5	YBX1	1	43166670	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	4320	43166670	206083951	27	150564											
KIAA0467	23334	broad.mit.edu	37	chr1	43870102	43870102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttttccatgccctgtccCgctgcttaggcgggctgctt	11	13	0	0	rs34426631		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43870102	T	T	43870102	3	4	189	1	0	0	0	0	1	0	0	0	8248	652	23	4		4	KIAA0467	1	43870102	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	703432	43870102	205380519	28	150565											
KIAA0467	23334	broad.mit.edu	37	chr1	43900755	43900755	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatgactgatattcttgttGacctccaatccccagtgata	7	10	1	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43900755	C	C	43900755	1	2	189	0	1	0	0	0	0	0	0	0	8248	1305	45	4		4	KIAA0467	1	43900755	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	30653	43900755	205349866	29	150566											
STIL	6491	broad.mit.edu	37	chr1	47746154	47746154	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaggctataggactacttGaagaacagaatgcattacag	9	7	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47746154	A	A	47746154	3	1	189	1	0	0	0	0	1	0	0	0	15400	1294	45	4	1914	4	STIL	1	47746154	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3845399	47746154	201504467	30	150567											
SPATA6	54558	broad.mit.edu	37	chr1	48918776	48918776	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagatagatgtcctctttgtCtttaagcacgactcctgggc	9	10	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48918776	G	G	48918776	3	3	189	1	0	0	0	0	1	0	0	0	15129	913	32	4	1435	4	SPATA6	1	48918776	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1172622	48918776	200331845	31	150568											
CC2D1B	200014	broad.mit.edu	37	chr1	52819274	52819274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggctcccgcagcctcaCcttcacctccagcttccccc	6	22	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52819274	A	A	52819274	3	1	189	1	0	0	0	0	1	0	0	0	2753	507	18	3	86	3	CC2D1B	1	52819274	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3900498	52819274	196431347	32	150569											
TMEM59	9528	broad.mit.edu	37	chr1	54506565	54506565	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatattccaaaagctagtctCacatgactacttctagatat	4	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54506565	A	A	54506565	1	1	189	0	1	0	0	0	0	0	0	0	16308	841	29	3		3	TMEM59	1	54506565	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1687291	54506565	194744056	33	150570											
FOXD3	27022	broad.mit.edu	37	chr1	63789229	63789229	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagctgaccctgagcggcaTctgcgagttcatcagcaacc	11	13	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63789229	A	A	63789229	3	1	189	1	0	0	0	0	1	0	0	0	6056	1435	50	5	502	5	FOXD3	1	63789229	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	9282664	63789229	185461392	34	150571											
CACHD1	57685	broad.mit.edu	37	chr1	65098382	65098382	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctcagcttcagattgccaagGacgctgctcaggtcatcctc	9	14	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65098382	C	C	65098382	3	2	189	1	0	0	0	0	1	0	0	0	2563	1174	41	4	614	4	CACHD1	1	65098382	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1309153	65098382	184152239	35	150572											
JAK1	3716	broad.mit.edu	37	chr1	65323453	65323453	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgcaatttattgatggcGtattctgtactagagggaga	12	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65323453	A	A	65323453	2	1	189	1	0	0	0	0	0	0	0	1	8007	1140	40	4		4	JAK1	1	65323453	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	225071	65323453	183927168	36	150573											
SGIP1	84251	broad.mit.edu	37	chr1	67137561	67137561	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctaagtgtttccaaacatAggttataagacatatcaggg	8	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67137561	T	T	67137561	1	4	189	0	1	0	0	0	0	0	0	0	14319	435	15	5		5	SGIP1	1	67137561	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	1814108	67137561	182113060	37	150574											
SGIP1	84251	broad.mit.edu	37	chr1	67154974	67154974	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtatgttcccttctgCcctggcttgctcagaaacag	10	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67154974	A	A	67154974	1	1	189	0	1	0	0	0	0	0	0	0	14319	754	26	3		3	SGIP1	1	67154974	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	17413	67154974	182095647	38	150575											
SGIP1	84251	broad.mit.edu	37	chr1	67155937	67155937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagcacccttagcgcgggCtgaaagcacttcttcaatat	8	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67155937	A	A	67155937	3	1	189	1	0	0	0	0	1	0	0	0	14319	797	28	3	1574	3	SGIP1	1	67155937	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	963	67155937	182094684	39	150576											
WDR78	79819	broad.mit.edu	37	chr1	67299229	67299229	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacacttcaatttttggaaaTtgttatgtccagtggtaaat	7	5	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67299229	C	C	67299229	1	2	189	0	1	0	0	0	0	0	0	0	17455	1508	52	5		5	WDR78	1	67299229	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	143292	67299229	181951392	40	150577											
LRRC7	57554	broad.mit.edu	37	chr1	70452024	70452024	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtgaagcccttgaggacCtcttattgtcatccaatatg	9	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70452024	A	A	70452024	3	1	189	1	0	0	0	0	1	0	0	0	9107	681	24	2	802	2	LRRC7	1	70452024	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3152795	70452024	178798597	41	150578											
LRRC40	55631	broad.mit.edu	37	chr1	70618156	70618156	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttctgaagcacacataactCcaaggatataaaggaaagtt	7	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70618156	A	A	70618156	4	1	189	1	0	0	0	0	0	1	0	0	9085	864	30	3	425	3	LRRC40	1	70618156	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	166132	70618156	178632465	42	150579											
USP33	23032	broad.mit.edu	37	chr1	78207349	78207349	+	Frame_Shift_Del	DEL	C	-	-													tgttatttcaccaactgaatCcaaatgtggacaatgatttc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78207349	-	-	78207349	7	5	189	1	0	1	0	1	0	0	0	0	17191	855	30	0	2805	0	USP33	1	78207349	Frame_Shift_Del	DEL	C	TCGA-64-5778-01A-01D-1625-08	7589193	78207349	171043272	43	150580											
ELTD1	64123	broad.mit.edu	37	chr1	79474654	79474655	+	5'Flank	INS	-	A	A													cataccaaaggcaaggaagcINSaaaaataaactatgaagagt							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79474655	A	A	79474654	6	5	189	0	1	1	1	0	0	0	0	0	5126	725	25	0		0	ELTD1	1	79474654	5'Flank	INS	-	TCGA-64-5778-01A-01D-1625-08	1267305	79474654	169775967	44	150581											
COL24A1	255631	broad.mit.edu	37	chr1	86453388	86453388	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catagaaaattactttaaatCcatttagcatataaaattcc	2	7	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86453388	A	A	86453388	1	1	189	0	1	0	0	0	0	0	0	0	3715	870	30	3		3	COL24A1	1	86453388	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	6978734	86453388	162797233	45	150582											
COL24A1	255631	broad.mit.edu	37	chr1	86590978	86590978	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagtggtcactgacaggctGaaatttgtctgagtatcttc	11	7	3	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86590978	A	A	86590978	2	1	189	1	0	0	0	0	0	0	0	1	3715	1281	45	4		4	COL24A1	1	86590978	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	137590	86590978	162659643	46	150583											
GBP5	115362	broad.mit.edu	37	chr1	89730567	89730567	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgagttctctctctgagcCaaggccaggactgcattctc	10	13	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89730567	G	G	89730567	3	3	189	1	0	0	0	0	1	0	0	0	6339	593	21	4	829	4	GBP5	1	89730567	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3139589	89730567	159520054	47	150584											
EPHX4	253152	broad.mit.edu	37	chr1	92511171	92511171	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctgttatcctgaaatggtGatgaagcttattgttattaa	8	4	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92511171	T	T	92511171	2	4	189	1	0	0	0	0	0	0	0	1	5224	1277	45	3		3	EPHX4	1	92511171	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	2780604	92511171	156739450	48	150585											
ARHGAP29	9411	broad.mit.edu	37	chr1	94650362	94650362	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattattttcctttaaagtcTccttttcattagaataggtt	4	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94650362	A	A	94650362	1	1	189	0	1	0	0	0	0	0	0	0	880	1566	54	5		5	ARHGAP29	1	94650362	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	2139191	94650362	154600259	49	150586											
LPPR5	163404	broad.mit.edu	37	chr1	99358714	99358714	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttgggaacattagctttgTaaaatatgtagtacctttac	8	6	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99358714	A	A	99358714	1	1	189	0	1	0	0	0	0	0	0	0	9015	1653	57	5		5	LPPR5	1	99358714	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	4708352	99358714	149891907	50	150587											
SASS6	163786	broad.mit.edu	37	chr1	100598391	100598391	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggctcgctgcctcggctGgtgtgcagaaaagcccaaca	13	12	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100598391	A	A	100598391	1	1	189	0	1	0	0	0	0	0	0	0	13962	1363	47	4		4	SASS6	1	100598391	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	1239677	100598391	148652230	51	150588											
TAF13	6884	broad.mit.edu	37	chr1	109618666	109618666	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacgcgcggggccgtagCtgggcctagccctctgcggc	18	14	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109618666	A	A	109618666	1	1	189	0	1	0	0	0	0	0	0	0	15636	812	28	3		3	TAF13	1	109618666	5'Flank	SNP	C	TCGA-64-5778-01A-01D-1625-08	9020275	109618666	139631955	52	150589											
KIAA1324	57535	broad.mit.edu	37	chr1	109737059	109737059	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagatccactctctgtgctAcaacgattgcaccttctcac	5	15	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109737059	G	G	109737059	3	3	189	1	0	0	0	0	1	0	0	0	8293	391	14	5	2022	5	KIAA1324	1	109737059	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	118393	109737059	139513562	53	150590											
GPR61	83873	broad.mit.edu	37	chr1	110086428	110086428	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctccgaatctctcagcagcCgctccacgatggtcaccagc	9	17	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110086428	G	G	110086428	3	3	189	1	0	0	0	0	1	0	0	0	6767	652	23	4	786	4	GPR61	1	110086428	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	349369	110086428	139164193	54	150591											
GSTM4	2948	broad.mit.edu	37	chr1	110201539	110201539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggagacaaggtaatggGggcatgtgatgaggacacta	16	4	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110201539	T	T	110201539	1	4	189	0	1	0	0	0	0	0	0	0	6906	1247	43	2		2	GSTM4	1	110201539	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	115111	110201539	139049082	55	150592											
FAM40A	85369	broad.mit.edu	37	chr1	110581197	110581197	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaggagtcactatgactcAggggcagagttgagagtgga	15	7	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110581197	T	T	110581197	1	4	189	0	1	0	0	0	0	0	0	0	5611	203	7	5		5	FAM40A	1	110581197	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	379658	110581197	138669424	56	150593											
UBL4B	164153	broad.mit.edu	37	chr1	110655096	110655096	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagccaacatctcccgcagGaccccctaatcttcagggca	8	16	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110655096	T	T	110655096	1	4	189	0	1	0	0	0	0	0	0	0	17014	1189	41	3		3	UBL4B	1	110655096	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	73899	110655096	138595525	57	150594											
KCNA3	3738	broad.mit.edu	37	chr1	111216207	111216207	+	Frame_Shift_Del	DEL	C	-	-													cgcgctggagaaaaggatgaCcccaataaagaggaagaaga							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111216207	-	-	111216207	7	5	189	1	0	1	0	1	0	0	0	0	8074	507	18	0	506	0	KCNA3	1	111216207	Frame_Shift_Del	DEL	C	TCGA-64-5778-01A-01D-1625-08	561111	111216207	138034414	58	150595											
DDX20	11218	broad.mit.edu	37	chr1	112298538	112298538	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccgcgagatctgacggcGcggctaccatggcggcggca	16	14	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112298538	T	T	112298538	1	4	189	0	1	0	0	0	0	0	0	0	4381	1102	38	3		3	DDX20	1	112298538	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	1082331	112298538	136952083	59	150596											
TRIM33	51592	broad.mit.edu	37	chr1	114969832	114969832	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attctttgcccagaaggtggGatcacaatggaaacgtattg	11	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114969832	A	A	114969832	3	1	189	1	0	0	0	0	1	0	0	0	16631	1174	41	4	2048	4	TRIM33	1	114969832	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2671294	114969832	134280789	60	150597											
SYCP1	6847	broad.mit.edu	37	chr1	115489023	115489023	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagatacagaaaaaattgCagtaacggccagttttcata	9	6	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115489023	A	A	115489023	1	1	189	0	1	0	0	0	0	0	0	0	15550	725	25	3		3	SYCP1	1	115489023	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	519191	115489023	133761598	61	150598											
CASQ2	845	broad.mit.edu	37	chr1	116243740	116243740	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaaagggagtgggaaaagaGatgatggaaaagggaaagga	18	1	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116243740	C	C	116243740	1	2	189	0	1	0	0	0	0	0	0	0	2707	957	33	4		4	CASQ2	1	116243740	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	754717	116243740	133006881	62	150599											
CASQ2	845	broad.mit.edu	37	chr1	116260444	116260444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagagctgtaaaagagcaGgttgaaggtttcctacctgg	13	7	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116260444	T	T	116260444	1	4	189	0	1	0	0	0	0	0	0	0	2707	1015	35	2		2	CASQ2	1	116260444	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	16704	116260444	132990177	63	150600											
IGSF3	3321	broad.mit.edu	37	chr1	117122093	117122093	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctgagggctgggcagCcactcctccacatggcagga	12	14	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117122093	A	A	117122093	3	1	189	1	0	0	0	0	1	0	0	0	7671	740	26	3	337	3	IGSF3	1	117122093	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	861649	117122093	132128528	64	150601											
VTCN1	79679	broad.mit.edu	37	chr1	117699283	117699283	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagcatctgtgagttgcaCgtttttcagccgcaaagagg	12	10	2	2	rs144508898	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117699283	T	T	117699283	3	4	189	1	0	0	0	0	1	0	0	0	17361	536	19	4	502	4	VTCN1	1	117699283	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	577190	117699283	131551338	65	150602											
NBPF10	100132406	broad.mit.edu	37	chr1	145303954	145303954	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgttcaagttgaggtggctGagaaagtgcagaaatcatct	12	5	3	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145303954	A	A	145303954	3	1	189	1	0	0	0	0	1	0	0	0	10287	1291	45	4	1385	4	NBPF10	1	145303954	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	27604671	145303954	103946667	66	150603											
NBPF10	100132406	broad.mit.edu	37	chr1	145304535	145304535	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaatagccatggctcttatGactccaaccagccacatagg	7	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145304535	C	C	145304535	3	2	189	1	0	0	0	0	1	0	0	0	10287	1290	45	4	1506	4	NBPF10	1	145304535	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	581	145304535	103946086	67	150604											
SV2A	9900	broad.mit.edu	37	chr1	149879341	149879341	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaataacactcttcaaacAgggaatcctcaaaggacact	5	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149879341	G	G	149879341	3	3	189	1	0	0	0	0	1	0	0	0	15535	188	7	5	655	5	SV2A	1	149879341	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	4574806	149879341	99371280	68	150605											
SV2A	9900	broad.mit.edu	37	chr1	149884838	149884838	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcagcacgaagcccacCacaaagacctccacaccgtc	8	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149884838	T	T	149884838	2	4	189	1	0	0	0	0	0	0	0	1	15535	581	21	4		4	SV2A	1	149884838	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	5497	149884838	99365783	69	150606											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150528080	150528080	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgcacacacacatgcaTatgcacacagacacatgccc	7	14	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150528080	A	A	150528080	1	1	189	0	1	0	0	0	0	0	0	0	277	1421	49	5		5	ADAMTSL4	1	150528080	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	643242	150528080	98722541	70	150607											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150529802	150529802	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actctgcatgctcagcgtccTgcgggaaaggtgagacatca	12	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150529802	C	C	150529802	3	2	189	1	0	0	0	0	1	0	0	0	277	1580	55	5	2076	5	ADAMTSL4	1	150529802	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	1722	150529802	98720819	71	150608											
SETDB1	9869	broad.mit.edu	37	chr1	150917340	150917340	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctggccaagtcttttcCctatcaagacatgccctacc	5	16	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150917340	A	A	150917340	1	1	189	0	1	0	0	0	0	0	0	0	14251	638	22	2		2	SETDB1	1	150917340	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	387538	150917340	98333281	72	150609											
CGN	57530	broad.mit.edu	37	chr1	151509828	151509828	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagctcctgttagctcgtGgtcctcaaggactcagaaac	9	13	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151509828	T	T	151509828	1	4	189	0	1	0	0	0	0	0	0	0	3333	1363	47	2		2	CGN	1	151509828	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	592488	151509828	97740793	73	150610											
TDRKH	11022	broad.mit.edu	37	chr1	151742669	151742669	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgactgcaaccctggagtaCgtggaagagaagacaaatgt	12	7	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151742669	A	A	151742669	1	1	189	0	1	0	0	0	0	0	0	0	15859	547	19	3		3	TDRKH	1	151742669	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	232841	151742669	97507952	74	150611											
THEM5	284486	broad.mit.edu	37	chr1	151824854	151824854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagaaattcttggtacaGgctcagcatgtccgaacacc	8	13	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151824854	T	T	151824854	3	4	189	1	0	0	0	0	1	0	0	0	15982	991	35	2	558	2	THEM5	1	151824854	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	82185	151824854	97425767	75	150612											
TCHHL1	126637	broad.mit.edu	37	chr1	152057341	152057341	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtttttgtagaaatttaGgaagagaatttaaaagattg	9	0	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152057341	T	T	152057341	1	4	189	0	1	0	0	0	0	0	0	0	15823	1015	35	2		2	TCHHL1	1	152057341	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	232487	152057341	97193280	76	150613											
FLG2	388698	broad.mit.edu	37	chr1	152327656	152327656	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgtgttgtccaaagccaGatgtctgtcccgaacttgac	9	12	1	2	rs34309186		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152327656	T	T	152327656	3	4	189	1	0	0	0	0	1	0	0	0	5980	942	33	3	4573	3	FLG2	1	152327656	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	270315	152327656	96922965	77	150614											
KPRP	448834	broad.mit.edu	37	chr1	152732371	152732371	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccaggctgcatcccaatctCaaacttcctctgttcaaagc	6	15	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152732371	T	T	152732371	4	4	189	1	0	0	0	0	0	1	0	0	8507	827	29	4	309	4	KPRP	1	152732371	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	404715	152732371	96518250	78	150615											
IVL	3713	broad.mit.edu	37	chr1	152882759	152882759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagcagcaggaggggcaCctgaagcacctagagcagca	14	12	0	3	rs12045716		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152882759	A	A	152882759	3	1	189	1	0	0	0	0	1	0	0	0	7999	506	18	3	488	3	IVL	1	152882759	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	150388	152882759	96367862	79	150616											
PGLYRP3	114771	broad.mit.edu	37	chr1	153283102	153283102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaccccaagcctggagacCcagaatgaagaaggcaagaa	10	11	0	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153283102	A	A	153283102	3	1	189	1	0	0	0	0	1	0	0	0	11890	623	22	2	1013	2	PGLYRP3	1	153283102	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	400343	153283102	95967519	80	150617											
NPR1	4881	broad.mit.edu	37	chr1	153660630	153660630	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgctcatgcagcggtgcTgggctgaggacccacaggag	17	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153660630	C	C	153660630	3	2	189	1	0	0	0	0	1	0	0	0	10689	1580	55	5	2408	5	NPR1	1	153660630	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	377528	153660630	95589991	81	150618											
GATAD2B	57459	broad.mit.edu	37	chr1	153792046	153792046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaataaaatagaaggagCataacaagaagaaagaaatt	7	2	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153792046	A	A	153792046	1	1	189	0	1	0	0	0	0	0	0	0	6323	725	25	3		3	GATAD2B	1	153792046	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	131416	153792046	95458575	82	150619											
CRTC2	200186	broad.mit.edu	37	chr1	153920685	153920685	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccttccaggcccagtggcTccatgcgcagctcatcttct	9	17	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153920685	A	A	153920685	3	1	189	1	0	0	0	0	1	0	0	0	3932	1551	54	5	103	5	CRTC2	1	153920685	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	128639	153920685	95329936	83	150620											
IL6R	3570	broad.mit.edu	37	chr1	154401665	154401665	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcaccaagtgtcttctccctCctccagaggtggcgagaggc	11	14	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154401665	G	G	154401665	1	3	189	0	1	0	0	0	0	0	0	0	7772	870	30	4		4	IL6R	1	154401665	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	480980	154401665	94848956	84	150621											
DCST2	127579	broad.mit.edu	37	chr1	154996469	154996469	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagacactaagcaggccaGcccagccagcttaaccctcc	7	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154996469	C	C	154996469	1	2	189	0	1	0	0	0	0	0	0	0	4336	986	34	4		4	DCST2	1	154996469	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	594804	154996469	94254152	85	150622											
ADAM15	8751	broad.mit.edu	37	chr1	155030752	155030752	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgggcagctccagtgccaGacaggtaggacccagcctct	13	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155030752	A	A	155030752	2	1	189	1	0	0	0	0	0	0	0	1	237	933	33	4		4	ADAM15	1	155030752	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	34283	155030752	94219869	86	150623											
MUC1	4582	broad.mit.edu	37	chr1	155160273	155160273	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attgaactgtgtctccacgtCgtggacattgatggtacctt	10	9	1	2	rs144273480		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155160273	A	A	155160273	3	1	189	1	0	0	0	0	1	0	0	0	10064	884	31	3	437	3	MUC1	1	155160273	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	129521	155160273	94090348	87	150624											
PAQR6	79957	broad.mit.edu	37	chr1	156215137	156215137	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcagcacagcctgcagcTaagaaaaccgttagggcata	9	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156215137	C	C	156215137	1	2	189	0	1	0	0	0	0	0	0	0	11533	1537	53	5		5	PAQR6	1	156215137	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1054864	156215137	93035484	88	150625											
CD5L	922	broad.mit.edu	37	chr1	157805829	157805829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccggcacaacacagccaCgtccttaatgtcccagccgt	7	18	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157805829	A	A	157805829	3	1	189	1	0	0	0	0	1	0	0	0	3057	536	19	3	887	3	CD5L	1	157805829	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1590692	157805829	91444792	89	150626											
OR10Z1	128368	broad.mit.edu	37	chr1	158577102	158577102	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttaatcccattgtttatagtCtaaggaatagggctatacag	8	6	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158577102	A	A	158577102	3	1	189	1	0	0	0	0	1	0	0	0	11017	912	32	3	876	3	OR10Z1	1	158577102	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	771273	158577102	90673519	90	150627											
SPTA1	6708	broad.mit.edu	37	chr1	158648145	158648145	+	Intron	DEL	A	-	-													aatacaaagacacggtttttAtaaagcacttcaaagttttc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158648145	-	-	158648145	6	5	189	0	1	1	0	1	0	0	0	0	15234	464	16	0		0	SPTA1	1	158648145	Intron	DEL	A	TCGA-64-5778-01A-01D-1625-08	71043	158648145	90602476	91	150628											
IFI16	3428	broad.mit.edu	37	chr1	159021489	159021490	+	Nonsense_Mutation	DNP	TG	CT	CT													ttgaaaccaagactgaagacTgaacctgaagaagtttccat							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	159021490	CT	CT	159021489	4	2	189	1	0	0	0	0	0	1	0	0	7581	1567	55	5	1548	5	IFI16	1	159021489	Nonsense_Mutation	DNP	TG	TCGA-64-5778-01A-01D-1625-08	373344	159021489	90229132	92	150629											
OR10J5	127385	broad.mit.edu	37	chr1	159505015	159505015	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctattgaactttctgacttCggcttgaggtaggcaatgga	11	7	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159505015	T	T	159505015	2	4	189	1	0	0	0	0	0	0	0	1	11006	871	31	4		4	OR10J5	1	159505015	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	483526	159505015	89745606	93	150630											
ATP1A2	477	broad.mit.edu	37	chr1	160105599	160105599	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggaagagtccctctgacCtccctgatgccctcagaatc	10	14	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160105599	G	G	160105599	1	3	189	0	1	0	0	0	0	0	0	0	1133	696	24	4		4	ATP1A2	1	160105599	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	600584	160105599	89145022	94	150631											
ATP1A4	480	broad.mit.edu	37	chr1	160137163	160137163	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgagagagaaaaaccccaaGgtggcagagattccctttaa	10	8	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160137163	C	C	160137163	3	2	189	1	0	0	0	0	1	0	0	0	1135	991	35	4	1490	4	ATP1A4	1	160137163	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	31564	160137163	89113458	95	150632											
OLFML2B	25903	broad.mit.edu	37	chr1	161954010	161954010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaggcgccattgtataCcacgtggcctgtgccgatcc	12	12	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161954010	A	A	161954010	3	1	189	1	0	0	0	0	1	0	0	0	10953	507	18	3	548	3	OLFML2B	1	161954010	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1816847	161954010	87296611	96	150633											
NOS1AP	9722	broad.mit.edu	37	chr1	162326802	162326804	+	In_Frame_Del	DEL	CTT	-	-													ctcacccaggatgctgctccCttcttcttcctcgaagcctc					rs41405649	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	162326804	-	-	162326802	7	5	189	1	0	1	0	1	0	0	0	0	10637	681	24	0	845	0	NOS1AP	1	162326802	In_Frame_Del	DEL	CTT	TCGA-64-5778-01A-01D-1625-08	372792	162326802	86923819	97	150634											
NUF2	83540	broad.mit.edu	37	chr1	163313600	163313600	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaattgtggattctccagaGaagttaaagaattataaaga	8	3	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163313600	C	C	163313600	3	2	189	1	0	0	0	0	1	0	0	0	10842	933	33	4	781	4	NUF2	1	163313600	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	986798	163313600	85937021	98	150635											
RXRG	6258	broad.mit.edu	37	chr1	165406478	165406478	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcagtcagtcagccagcaCgcctggctaagcatctgctt	10	13	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165406478	T	T	165406478	1	4	189	0	1	0	0	0	0	0	0	0	13876	551	19	4		4	RXRG	1	165406478	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2092878	165406478	83844143	99	150636											
DUSP27	92235	broad.mit.edu	37	chr1	167097478	167097479	+	Frame_Shift_Ins	INS	-	A	A													agttcccgagaggagagcccINSagagccctacttcttccgcc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167097479	A	A	167097478	7	5	189	1	0	1	1	0	0	0	0	0	4864	594	21	0	3128	0	DUSP27	1	167097478	Frame_Shift_Ins	INS	-	TCGA-64-5778-01A-01D-1625-08	1691000	167097478	82153143	100	150637											
SELP	6403	broad.mit.edu	37	chr1	169581604	169581604	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgaaggcaggtcatgtttCctcgttcaggaatcttcagg	11	8	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169581604	T	T	169581604	3	4	189	1	0	0	0	0	1	0	0	0	14132	855	30	4	1724	4	SELP	1	169581604	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2484126	169581604	79669017	101	150638											
TNFSF4	7292	broad.mit.edu	37	chr1	173176276	173176276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgaatcttggcctggctgCatttcccacattctcttcca	6	15	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173176276	A	A	173176276	3	1	189	1	0	0	0	0	1	0	0	0	16433	710	25	3	523	3	TNFSF4	1	173176276	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3594672	173176276	76074345	102	150639											
SLC9A11	284525	broad.mit.edu	37	chr1	173542506	173542506	+	Intron	DEL	T	-	-													tgacattttaagcaatcatcTtaaaaatatattttcctttt							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	173542506	-	-	173542506	6	5	189	0	1	1	0	1	0	0	0	0	14825	1624	56	0		0	SLC9A11	1	173542506	Intron	DEL	T	TCGA-64-5778-01A-01D-1625-08	366230	173542506	75708115	103	150640											
KLHL20	27252	broad.mit.edu	37	chr1	173703475	173703475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttgttggagagcaatatGggttcacattctgctaaata	9	6	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173703475	T	T	173703475	1	4	189	0	1	0	0	0	0	0	0	0	8446	1363	47	2		2	KLHL20	1	173703475	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	160969	173703475	75547146	104	150641											
TNN	63923	broad.mit.edu	37	chr1	175086035	175086035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatctcactctttggtacCagttcatagtgttcattgat	7	9	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175086035	A	A	175086035	1	1	189	0	1	0	0	0	0	0	0	0	16446	609	21	2		2	TNN	1	175086035	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1382560	175086035	74164586	105	150642											
PAPPA2	60676	broad.mit.edu	37	chr1	176564445	176564445	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcagctggcagctgagcGtccaccaggtccacaattcc	9	15	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176564445	A	A	176564445	3	1	189	1	0	0	0	0	1	0	0	0	11527	1145	40	4	1711	4	PAPPA2	1	176564445	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1478410	176564445	72686176	106	150643											
C1orf49	84066	broad.mit.edu	37	chr1	178489853	178489853	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggaactcaggctgatGggaaagactcacagagaacc	12	10	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178489853	T	T	178489853	3	4	189	1	0	0	0	0	1	0	0	0	2063	1348	47	2	437	2	C1orf49	1	178489853	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1925408	178489853	70760768	107	150644											
C1orf125	126859	broad.mit.edu	37	chr1	179339107	179339107	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtgtatttgctttttccCagggcactcttccacgcctt	7	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179339107	T	T	179339107	1	4	189	0	1	0	0	0	0	0	0	0	2013	609	21	4		4	C1orf125	1	179339107	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	849254	179339107	69911514	108	150645											
C1orf125	126859	broad.mit.edu	37	chr1	179347807	179347807	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacgatgtaacatatgccaAaggacagactagggagaagg	13	6	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179347807	T	T	179347807	3	4	189	1	0	0	0	0	1	0	0	0	2013	14	1	5	424	5	C1orf125	1	179347807	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	8700	179347807	69902814	109	150646											
DHX9	1660	broad.mit.edu	37	chr1	182836044	182836044	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatatagataattgtccataGatttactactttgaactttt	4	5	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182836044	A	A	182836044	1	1	189	0	1	0	0	0	0	0	0	0	4556	957	33	4		4	DHX9	1	182836044	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3488237	182836044	66414577	110	150647											
FAM5C	339479	broad.mit.edu	37	chr1	190203445	190203445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaatggaaaagaaatcaCgactggataattgctattca	7	5	2	1	rs116705182	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190203445	A	A	190203445	1	1	189	0	1	0	0	0	0	0	0	0	5645	551	19	3		3	FAM5C	1	190203445	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	7367401	190203445	59047176	111	150648											
CFH	3075	broad.mit.edu	37	chr1	196642292	196642292	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatccattaaggaaatgtcaGagtaagtacttaatacattt	6	5	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196642292	T	T	196642292	3	4	189	1	0	0	0	0	1	0	0	0	3313	956	33	3	249	3	CFH	1	196642292	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	6438847	196642292	52608329	112	150649											
CFH	3075	broad.mit.edu	37	chr1	196695583	196695583	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatttaaccattatttacaTagtatttctactatagagca	3	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196695583	A	A	196695583	1	1	189	0	1	0	0	0	0	0	0	0	3313	1421	49	5		5	CFH	1	196695583	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	53291	196695583	52555038	113	150650											
KIF14	9928	broad.mit.edu	37	chr1	200530080	200530080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaagaaaagataagggcCgggcacagcggctcacgcct	14	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200530080	A	A	200530080	1	1	189	0	1	0	0	0	0	0	0	0	8346	667	23	1		1	KIF14	1	200530080	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3834497	200530080	48720541	114	150651											
LGR6	59352	broad.mit.edu	37	chr1	202163598	202163598	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgggagcccaggcttgGcgaggtgggttctggaccct	16	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202163598	T	T	202163598	1	4	189	0	1	0	0	0	0	0	0	0	8830	1218	42	3		3	LGR6	1	202163598	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1633518	202163598	47087023	115	150652											
FMOD	2331	broad.mit.edu	37	chr1	203225114	203225114	+	Intron	DEL	G	-	-													tacagccaatggtttcctctGggggctttgaaatcacacta							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	203225114	-	-	203225114	6	5	189	0	1	1	0	1	0	0	0	0	6017	1363	47	0		0	FMOD	1	203225114	Intron	DEL	G	TCGA-64-5778-01A-01D-1625-08	1061516	203225114	46025507	116	150653											
ATP2B4	493	broad.mit.edu	37	chr1	203669926	203669926	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctcctttcccgtgtagGgacccatgtcatggaaggtt	10	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203669926	T	T	203669926	3	4	189	1	0	0	0	0	1	0	0	0	1146	1246	43	2	794	2	ATP2B4	1	203669926	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	444812	203669926	45580695	117	150654											
CR1L	1379	broad.mit.edu	37	chr1	207885807	207885807	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actatgaggccttcagcaggCataggatatagcaaaagaaa	10	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207885807	T	T	207885807	1	4	189	0	1	0	0	0	0	0	0	0	3873	725	25	4		4	CR1L	1	207885807	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4215881	207885807	41364814	118	150655											
CAMK1G	57172	broad.mit.edu	37	chr1	209781345	209781345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttaccccttctcgttcCctcccctgtctcagctcctc	4	21	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209781345	A	A	209781345	1	1	189	0	1	0	0	0	0	0	0	0	2624	638	22	2		2	CAMK1G	1	209781345	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1895538	209781345	39469276	119	150656											
KCNH1	3756	broad.mit.edu	37	chr1	211035492	211035492	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggtaaatccagctgttccGacatagtaatctggagcagc	10	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211035492	T	T	211035492	1	4	189	0	1	0	0	0	0	0	0	0	8101	1073	37	3		3	KCNH1	1	211035492	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1254147	211035492	38215129	120	150657											
PTPN14	5784	broad.mit.edu	37	chr1	214705501	214705501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgaggtcgttggcaaagCctgggtcctgtcctctcgtt	12	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214705501	A	A	214705501	1	1	189	0	1	0	0	0	0	0	0	0	12889	754	26	3		3	PTPN14	1	214705501	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3670009	214705501	34545120	121	150658											
USH2A	7399	broad.mit.edu	37	chr1	215848721	215848721	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttccatttgggttaacagGctcagaccagctcagctcaa	8	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215848721	C	C	215848721	3	2	189	1	0	0	0	0	1	0	0	0	17162	1203	42	4	3116	4	USH2A	1	215848721	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1143220	215848721	33401900	122	150659											
TGFB2	7042	broad.mit.edu	37	chr1	218610720	218610720	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgcctacgtccactttAcattgatttcaagagggatc	8	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	218610720	G	G	218610720	3	3	189	1	0	0	0	0	1	0	0	0	15941	391	14	5	1078	5	TGFB2	1	218610720	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	2761999	218610720	30639901	123	150660											
IARS2	55699	broad.mit.edu	37	chr1	220320719	220320719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaatggggaagtgtctgaCaagctttaccaaggcaggac	12	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220320719	A	A	220320719	1	1	189	0	1	0	0	0	0	0	0	0	7544	493	17	3		3	IARS2	1	220320719	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1709999	220320719	28929902	124	150661											
LEFTY2	7044	broad.mit.edu	37	chr1	226128808	226128808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccagccaggggcagcacCcagagtgcccagcagagcca	15	15	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226128808	A	A	226128808	3	1	189	1	0	0	0	0	1	0	0	0	8788	624	22	2	1083	2	LEFTY2	1	226128808	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	5808089	226128808	23121813	125	150662											
OBSCN	84033	broad.mit.edu	37	chr1	228486428	228486428	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgtcaggggtaaagtccAtctgtccagatctgcgttct	10	11	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228486428	G	G	228486428	1	3	189	0	1	0	0	0	0	0	0	0	10907	232	8	5		5	OBSCN	1	228486428	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2357620	228486428	20764193	126	150663											
ACTA1	58	broad.mit.edu	37	chr1	229568663	229568663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgcacccgttaacgccGctccgggtggcaccaggctg	12	17	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229568663	T	T	229568663	1	4	189	0	1	0	0	0	0	0	0	0	191	1102	38	3		3	ACTA1	1	229568663	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1082235	229568663	19681958	127	150664											
C1orf198	84886	broad.mit.edu	37	chr1	230979457	230979457	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgctcagcattgatcttccaGaatgacgcttcctcctcctt	6	15	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230979457	C	C	230979457	3	2	189	1	0	0	0	0	1	0	0	0	2046	933	33	4	421	4	C1orf198	1	230979457	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1410794	230979457	18271164	128	150665											
SIPA1L2	57568	broad.mit.edu	37	chr1	232649546	232649546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaagcaaaacattgtgaCtggttcttaaaaaactactc	5	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232649546	A	A	232649546	1	1	189	0	1	0	0	0	0	0	0	0	14443	580	20	3		3	SIPA1L2	1	232649546	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1670089	232649546	16601075	129	150666											
LYST	1130	broad.mit.edu	37	chr1	235969372	235969372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaattctgtttaaatcctGgttttcatttacacttgtat	5	6	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235969372	T	T	235969372	3	4	189	1	0	0	0	0	1	0	0	0	9216	1357	47	2	8533	2	LYST	1	235969372	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3319826	235969372	13281249	130	150667											
HEATR1	55127	broad.mit.edu	37	chr1	236727849	236727849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagacatgaaggacactgaCaaaaatttaaaatgccgcag	9	7	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236727849	T	T	236727849	2	4	189	1	0	0	0	0	0	0	0	1	7094	477	17	4		4	HEATR1	1	236727849	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	758477	236727849	12522772	131	150668											
RYR2	6262	broad.mit.edu	37	chr1	237608780	237608780	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaagaatcacgcacagcccGagttatccggagcacagtct	10	12	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237608780	C	C	237608780	3	2	189	1	0	0	0	0	1	0	0	0	13880	1058	37	4	1304	4	RYR2	1	237608780	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	880931	237608780	11641841	132	150669											
RGS7	6000	broad.mit.edu	37	chr1	240933326	240933326	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagctgagattccaagttacGctggtaagctctgcaatatt	9	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240933326	A	A	240933326	1	1	189	0	1	0	0	0	0	0	0	0	13419	1102	38	4		4	RGS7	1	240933326	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3324546	240933326	8317295	133	150670											
RGS7	6000	broad.mit.edu	37	chr1	240969401	240969401	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctaacgctcaacttctcGgaagcacgtttgtggtgtga	10	10	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240969401	A	A	240969401	1	1	189	0	1	0	0	0	0	0	0	0	13419	1131	39	4		4	RGS7	1	240969401	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	36075	240969401	8281220	134	150671											
WDR64	128025	broad.mit.edu	37	chr1	241913068	241913068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactgcaggtgccctttttGggaaaatcaaatgagtcagt	11	7	2	1	rs75726248		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241913068	T	T	241913068	1	4	189	0	1	0	0	0	0	0	0	0	17442	1363	47	2		2	WDR64	1	241913068	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	943667	241913068	7337553	135	150672											
NLRP3	114548	broad.mit.edu	37	chr1	247587436	247587436	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagggggcggcagggattGggaaaacaatcctggccagg	17	9	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247587436	A	A	247587436	3	1	189	1	0	0	0	0	1	0	0	0	10573	1348	47	4	701	4	NLRP3	1	247587436	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5674368	247587436	1663185	136	150673											
OR13G1	441933	broad.mit.edu	37	chr1	247836335	247836335	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaactcagttacaacgctGtgattcatcctgcttgggtg	10	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247836335	T	T	247836335	3	4	189	1	0	0	0	0	1	0	0	0	11036	1368	48	3	918	3	OR13G1	1	247836335	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	248899	247836335	1414286	137	150674											
OR2W3	343171	broad.mit.edu	37	chr1	248059478	248059478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcactgtggccatcgaagGcaccgtctttgtcctggcgg	13	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059478	T	T	248059478	3	4	189	1	0	0	0	0	1	0	0	0	11127	1203	42	3	592	3	OR2W3	1	248059478	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	223143	248059478	1191143	138	150675											
OR2AK2	391191	broad.mit.edu	37	chr1	248129425	248129425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccacctgattgtggcaagCctgttctatgcaaccactct	7	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248129425	A	A	248129425	3	1	189	1	0	0	0	0	1	0	0	0	11080	738	26	3	794	3	OR2AK2	1	248129425	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	69947	248129425	1121196	139	150676											
OR2T3	343173	broad.mit.edu	37	chr1	248637201	248637201	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaatcctgagttttttcTgtgagactcctgccctgctg	10	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248637201	A	A	248637201	3	1	189	1	0	0	0	0	1	0	0	0	11117	1580	55	5	552	5	OR2T3	1	248637201	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	507776	248637201	613420	140	150677											
OR2G6	391211	broad.mit.edu	37	chr1	248685394	248685394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctggccggtggagcatgGctcagcggcctcatcacctc	12	15	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248685394	T	T	248685394	3	4	189	1	0	0	0	0	1	0	0	0	11094	1212	42	3	449	3	OR2G6	1	248685394	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	48193	248685394	565227	141	150678											
PGBD2	267002	broad.mit.edu	37	chr1	249211251	249211251	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgaaggaacaattaatttCattgttaatgaaaccaatcg	7	5	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	249211251	T	T	249211251	2	4	189	1	0	0	0	0	0	0	0	1	11876	825	29	4		4	PGBD2	1	249211251	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	525857	249211251	39370	142	150679											
SNTG2	54221	broad.mit.edu	37	chr2	1168874	1168874	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaactccagtaccacagtaaGcatatagatttttgttaaat	5	7	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1168874	C	C	1168874	1	2	189	0	1	0	0	0	0	0	0	0	14989	986	34	4		4	SNTG2	2	1168874	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08		1168874	242030499	143	150680											
PXDN	7837	broad.mit.edu	37	chr2	1642638	1642638	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgttctgaggtctgtgaTggtcttctgcatttccagaa	11	8	4	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1642638	C	C	1642638	3	2	189	1	0	0	0	0	1	0	0	0	12955	1464	51	5	265	5	PXDN	2	1642638	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	473764	1642638	241556735	144	150681											
GRHL1	29841	broad.mit.edu	37	chr2	10102598	10102598	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggttttcttcccctcGgatctcagtctgcggatgcc	9	13	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10102598	C	C	10102598	2	2	189	1	0	0	0	0	0	0	0	1	6829	1103	39	4		4	GRHL1	2	10102598	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	8459960	10102598	233096775	145	150682											
GRHL1	29841	broad.mit.edu	37	chr2	10133428	10133428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaaatgatttcaaacttGtagaaaaactgcaagtacag	8	5	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10133428	T	T	10133428	1	4	189	0	1	0	0	0	0	0	0	0	6829	1392	48	3		3	GRHL1	2	10133428	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	30830	10133428	233065945	146	150683											
GRHL1	29841	broad.mit.edu	37	chr2	10135892	10135892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaataaggaagctggacCagataaagaatgaaagtcat	9	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10135892	A	A	10135892	1	1	189	0	1	0	0	0	0	0	0	0	6829	609	21	2		2	GRHL1	2	10135892	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2464	10135892	233063481	147	150684											
NBAS	51594	broad.mit.edu	37	chr2	15601749	15601749	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacaataacattaactgcaCagctcaaagatttagagagt	6	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15601749	A	A	15601749	1	1	189	0	1	0	0	0	0	0	0	0	10280	493	17	3		3	NBAS	2	15601749	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	5465857	15601749	227597624	148	150685											
APOB	338	broad.mit.edu	37	chr2	21230280	21230280	+	Frame_Shift_Del	DEL	C	-	-													ttccttcaagcctgttttttCccatagagagaaatctttca							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21230280	-	-	21230280	7	5	189	1	0	1	0	1	0	0	0	0	787	864	30	0	4247	0	APOB	2	21230280	Frame_Shift_Del	DEL	C	TCGA-64-5778-01A-01D-1625-08	5628531	21230280	221969093	149	150686											
APOB	338	broad.mit.edu	37	chr2	21233969	21233969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgctatacagctgcccaGtatgttctccccagagagcg	9	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21233969	T	T	21233969	3	4	189	1	0	0	0	0	1	0	0	0	787	1029	36	3	7936	3	APOB	2	21233969	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3689	21233969	221965404	150	150687											
APOB	338	broad.mit.edu	37	chr2	21251356	21251356	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataagataggcagccagtcGcttatctcccggagaagcat	10	11	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21251356	T	T	21251356	2	4	189	1	0	0	0	0	0	0	0	1	787	1095	38	3		3	APOB	2	21251356	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	17387	21251356	221948017	151	150688											
ADCY3	109	broad.mit.edu	37	chr2	25057633	25057633	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagggcccgggaggagtggTgggcctggacgcttccgggt	20	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25057633	A	A	25057633	1	1	189	0	1	0	0	0	0	0	0	0	295	1711	59	5		5	ADCY3	2	25057633	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	3806277	25057633	218141740	152	150689											
DNMT3A	1788	broad.mit.edu	37	chr2	25470539	25470539	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccggcccgtcatccaccaaGacacaatgcggcctggccac	9	18	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25470539	A	A	25470539	3	1	189	1	0	0	0	0	1	0	0	0	4716	942	33	4	1867	4	DNMT3A	2	25470539	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	412906	25470539	217728834	153	150690											
DTNB	1838	broad.mit.edu	37	chr2	25754371	25754371	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtcaagtggtttctcTggttgctcaggaaaaacagg	13	7	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25754371	C	C	25754371	2	2	189	1	0	0	0	0	0	0	0	1	4829	1567	55	5		5	DTNB	2	25754371	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	283832	25754371	217445002	154	150691											
PLB1	151056	broad.mit.edu	37	chr2	28841261	28841261	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggccgccctgggtgactctCtgactgtgagtagtgagcca	14	11	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28841261	A	A	28841261	3	1	189	1	0	0	0	0	1	0	0	0	12119	912	32	3	3525	3	PLB1	2	28841261	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3086890	28841261	214358112	155	150692											
XDH	7498	broad.mit.edu	37	chr2	31609340	31609340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagccttgaggtccagcaGctccttgagggttgaggcct	14	11	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31609340	T	T	31609340	3	4	189	1	0	0	0	0	1	0	0	0	17553	962	34	3	3380	3	XDH	2	31609340	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2768079	31609340	211590033	156	150693											
MEMO1	51072	broad.mit.edu	37	chr2	32157045	32157050	+	Intron	DEL	AATAAC	-	-													cctcatgaaattgagtacatAataacaataagtataaaaag							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32157050	-	-	32157045	6	5	189	0	1	1	0	1	0	0	0	0	9564	377	13	0		0	MEMO1	2	32157045	Intron	DEL	AATAAC	TCGA-64-5778-01A-01D-1625-08	547705	32157045	211042328	157	150694											
SLC30A6	55676	broad.mit.edu	37	chr2	32428324	32428324	+	Intron	DEL	G	-	-													caggtagagctggacagacaGggatttgtatatgtttttat							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32428324	-	-	32428324	6	5	189	0	1	1	0	1	0	0	0	0	14673	1015	35	0		0	SLC30A6	2	32428324	Intron	DEL	G	TCGA-64-5778-01A-01D-1625-08	271279	32428324	210771049	158	150695											
STRN	6801	broad.mit.edu	37	chr2	37111118	37111118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaggaagcctggagctGctgggtctggaaggtgaacc	16	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37111118	T	T	37111118	3	4	189	1	0	0	0	0	1	0	0	0	15447	1310	46	3	1239	3	STRN	2	37111118	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4682794	37111118	206088255	159	150696											
ABCG8	64241	broad.mit.edu	37	chr2	44078951	44078951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttctcccaggcccagcGtgacaaaagggtaactaact	8	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44078951	T	T	44078951	3	4	189	1	0	0	0	0	1	0	0	0	72	1145	40	3	565	3	ABCG8	2	44078951	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	6967833	44078951	199120422	160	150697											
RTN4	57142	broad.mit.edu	37	chr2	55252705	55252705	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccttagaaataaataagtCatcatttgaataaactgcag	5	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55252705	A	A	55252705	3	1	189	1	0	0	0	0	1	0	0	0	13839	826	29	3	1114	3	RTN4	2	55252705	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	11173754	55252705	187946668	161	150698											
SMEK2	57223	broad.mit.edu	37	chr2	55808792	55808792	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctagctcaggatcagtatCacagatcatttgttcaatta	6	9	5	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55808792	T	T	55808792	3	4	189	1	0	0	0	0	1	0	0	0	14908	826	29	4	1313	4	SMEK2	2	55808792	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	556087	55808792	187390581	162	150699											
BMP10	27302	broad.mit.edu	37	chr2	69093072	69093072	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagcggggtcctcttacaGtagtttcctttggcgttcct	11	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69093072	A	A	69093072	2	1	189	1	0	0	0	0	0	0	0	1	1463	1024	36	4		4	BMP10	2	69093072	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	13284280	69093072	174106301	163	150700											
GFPT1	2673	broad.mit.edu	37	chr2	69601270	69601270	+	Intron	DEL	A	-	-													aaataaacaaatatttaatgAaaaattctgatttaaaaaat							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69601270	-	-	69601270	6	5	189	0	1	1	0	1	0	0	0	0	6409	261	9	0		0	GFPT1	2	69601270	Intron	DEL	A	TCGA-64-5778-01A-01D-1625-08	508198	69601270	173598103	164	150701											
ZNF638	27332	broad.mit.edu	37	chr2	71632734	71632734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttttgctttttaggaaGctatatttataaccttggta	6	5	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71632734	T	T	71632734	3	4	189	1	0	0	0	0	1	0	0	0	18182	971	34	3	3028	3	ZNF638	2	71632734	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2031464	71632734	171566639	165	150702											
DYSF	8291	broad.mit.edu	37	chr2	71828075	71828075	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctctgaagccaggcctccTgctgagacccattttctgaa	8	14	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71828075	A	A	71828075	1	1	189	0	1	0	0	0	0	0	0	0	4899	1595	55	5		5	DYSF	2	71828075	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	195341	71828075	171371298	166	150703											
CCT7	10574	broad.mit.edu	37	chr2	73461436	73461436	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatttctattgcgcgaggcAttgtgggttgctgggcggcc	16	8	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73461436	G	G	73461436	1	3	189	0	1	0	0	0	0	0	0	0	2989	232	8	5		5	CCT7	2	73461436	5'UTR	SNP	A	TCGA-64-5778-01A-01D-1625-08	1633361	73461436	169737937	167	150704											
MOGS	7841	broad.mit.edu	37	chr2	74689728	74689728	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaattccaccaaggaggccGctgagggcagcctgacccaa	11	15	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74689728	A	A	74689728	2	1	189	1	0	0	0	0	0	0	0	1	9791	1078	38	4		4	MOGS	2	74689728	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	1228292	74689728	168509645	168	150705											
DQX1	165545	broad.mit.edu	37	chr2	74751135	74751135	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggcaggcagcttccaccCgatcaggtgggatggtgtcc	14	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74751135	T	T	74751135	3	4	189	1	0	0	0	0	1	0	0	0	4791	652	23	4	1458	4	DQX1	2	74751135	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	61407	74751135	168448238	169	150706											
C2orf65	130951	broad.mit.edu	37	chr2	74855388	74855388	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaataagctccaaaaggttCagagtcaagaatctgttcag	8	8	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74855388	T	T	74855388	1	4	189	0	1	0	0	0	0	0	0	0	2206	841	29	4		4	C2orf65	2	74855388	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	104253	74855388	168343985	170	150707											
REG3G	130120	broad.mit.edu	37	chr2	79253232	79253232	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacactatgctgcctcccAtggccctgcccagtgtgtcc	9	17	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79253232	G	G	79253232	3	3	189	1	0	0	0	0	1	0	0	0	13321	217	8	5	15	5	REG3G	2	79253232	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	4397844	79253232	163946141	171	150708											
REG1B	5968	broad.mit.edu	37	chr2	79312559	79312559	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatcccagtccccatgttcAtccccagagataagtgggaa	8	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79312559	G	G	79312559	1	3	189	0	1	0	0	0	0	0	0	0	13319	232	8	5		5	REG1B	2	79312559	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	59327	79312559	163886814	172	150709											
SUCLG1	8802	broad.mit.edu	37	chr2	84668320	84668320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcattcactcaaagctgttTagccttgtgagaggcttaat	9	9	2	1	rs80272300	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84668320	C	C	84668320	1	2	189	0	1	0	0	0	0	0	0	0	15482	1769	61	5		5	SUCLG1	2	84668320	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	5355761	84668320	158531053	173	150710											
RMND5A	64795	broad.mit.edu	37	chr2	87013161	87013161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcatccatccagccacGtccagcctcccaatccccca	5	21	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87013161	T	T	87013161	1	4	189	0	1	0	0	0	0	0	0	0	13508	1160	40	3		3	RMND5A	2	87013161	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2344841	87013161	156186212	174	150711											
ZNF2	7549	broad.mit.edu	37	chr2	95847613	95847613	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctatcagtgtaacgagtGtggcaaagctttctttgacc	10	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95847613	T	T	95847613	3	4	189	1	0	0	0	0	1	0	0	0	17886	1377	48	3	1054	3	ZNF2	2	95847613	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	8834452	95847613	147351760	175	150712											
ASTL	431705	broad.mit.edu	37	chr2	96789930	96789930	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggtcggggctcctggattCcgccgacagtgcctccaaaa	14	13	0	0	rs147267731	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96789930	A	A	96789930	4	1	189	1	0	0	0	0	0	1	0	0	1067	864	30	3	343	3	ASTL	2	96789930	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	942317	96789930	146409443	176	150713											
VWA3B	200403	broad.mit.edu	37	chr2	98823753	98823753	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatttggatgccaccactgTgctgccccatgctgtcactg	9	14	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98823753	G	G	98823753	1	3	189	0	1	0	0	0	0	0	0	0	17368	1711	59	5		5	VWA3B	2	98823753	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	2033823	98823753	144375620	177	150714											
VWA3B	200403	broad.mit.edu	37	chr2	98844593	98844593	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaacctcttgtctctaaaaaGaaaagaaacatgtttggaat	7	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98844593	T	T	98844593	1	4	189	0	1	0	0	0	0	0	0	0	17368	957	33	3		3	VWA3B	2	98844593	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	20840	98844593	144354780	178	150715											
UXS1	80146	broad.mit.edu	37	chr2	106761802	106761803	+	Missense_Mutation	DNP	CC	AA	AA													tttgtcagttagatgggagcCcacgaaccctgcgcctcctg							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	106761803	AA	AA	106761802	3	1	189	1	0	0	0	0	1	0	0	0	17236	623	22	2	1001	2	UXS1	2	106761802	Missense_Mutation	DNP	CC	TCGA-64-5778-01A-01D-1625-08	7917209	106761802	136437571	179	150716											
PSD4	23550	broad.mit.edu	37	chr2	113958726	113958726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaaggtggtggggcctgtGtgttgcagaaaacccgctac	15	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113958726	T	T	113958726	1	4	189	0	1	0	0	0	0	0	0	0	12755	1392	48	3		3	PSD4	2	113958726	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	7196924	113958726	129240647	180	150717											
DPP10	57628	broad.mit.edu	37	chr2	116485391	116485391	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttcacatttcctgatccaGatttatatttttgaaaataa	4	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116485391	C	C	116485391	5	2	189	1	0	0	0	0	0	0	1	0	4767	956	33	4	777	4	DPP10	2	116485391	Splice_Site	SNP	G	TCGA-64-5778-01A-01D-1625-08	2526665	116485391	126713982	181	150718											
MARCO	8685	broad.mit.edu	37	chr2	119727764	119727765	+	Missense_Mutation	DNP	CC	AA	AA													ctctggcggctgaggacagcCcgtccttctccttgctgcag							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	119727765	AA	AA	119727764	3	1	189	1	0	0	0	0	1	0	0	0	9403	623	22	2	284	2	MARCO	2	119727764	Missense_Mutation	DNP	CC	TCGA-64-5778-01A-01D-1625-08	3242373	119727764	123471609	182	150719											
MARCO	8685	broad.mit.edu	37	chr2	119748238	119748238	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggctgcatcttcatccctCggagtgatgacggggaaggc	14	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119748238	A	A	119748238	1	1	189	0	1	0	0	0	0	0	0	0	9403	899	31	3		3	MARCO	2	119748238	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	20474	119748238	123451135	183	150720											
MKI67IP	84365	broad.mit.edu	37	chr2	122486106	122486106	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatactttccgttttctGtaaaatctttaataaagaag	5	5	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122486106	A	A	122486106	4	1	189	1	0	0	0	0	0	1	0	0	9692	1386	48	4	322	4	MKI67IP	2	122486106	Nonsense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2737868	122486106	120713267	184	150721											
MKI67IP	84365	broad.mit.edu	37	chr2	122489829	122489829	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaacaattaaatttgaatgCgtcatcaaattcctaaaatg	5	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122489829	G	G	122489829	1	3	189	0	1	0	0	0	0	0	0	0	9692	783	27	4		4	MKI67IP	2	122489829	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3723	122489829	120709544	185	150722											
CYP27C1	339761	broad.mit.edu	37	chr2	127944669	127944669	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaccagtaaaatagcaaCctttttacattactttgcat	4	9	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127944669	A	A	127944669	1	1	189	0	1	0	0	0	0	0	0	0	4193	522	18	3		3	CYP27C1	2	127944669	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	5454840	127944669	115254704	186	150723											
ZRANB3	84083	broad.mit.edu	37	chr2	136023099	136023099	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagagtaaggcatataatCttacgtgagtgaacaaagct	9	5	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136023099	A	A	136023099	1	1	189	0	1	0	0	0	0	0	0	0	18353	928	32	3		3	ZRANB3	2	136023099	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	8078430	136023099	107176274	187	150724											
LCT	3938	broad.mit.edu	37	chr2	136561527	136561527	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttccgtagccatagcCctggtaagcaatgacaaagg	11	10	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136561527	A	A	136561527	3	1	189	1	0	0	0	0	1	0	0	0	8765	623	22	2	1175	2	LCT	2	136561527	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	538428	136561527	106637846	188	150725											
LRP1B	53353	broad.mit.edu	37	chr2	141128887	141128887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaatttgaaattgagataGagtaaaaataacaggtttta	7	1	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141128887	C	C	141128887	1	2	189	0	1	0	0	0	0	0	0	0	9042	957	33	4		4	LRP1B	2	141128887	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4567360	141128887	102070486	189	150726											
LRP1B	53353	broad.mit.edu	37	chr2	141680663	141680663	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatcaggaacgcaattacCatcagggtggcactgaaatt	9	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141680663	T	T	141680663	3	4	189	1	0	0	0	0	1	0	0	0	9042	594	21	4	10893	4	LRP1B	2	141680663	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	551776	141680663	101518710	190	150727											
LRP1B	53353	broad.mit.edu	37	chr2	141986816	141986816	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctcctgcttttgttatctgGatacatttgagttgatttga	8	7	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141986816	C	C	141986816	3	2	189	1	0	0	0	0	1	0	0	0	9042	1164	41	4	13357	4	LRP1B	2	141986816	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	306153	141986816	101212557	191	150728											
TNFAIP6	7130	broad.mit.edu	37	chr2	152214116	152214116	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagatgtttcagtcacatttCagccactgctctgagaattt	7	10	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152214116	A	A	152214116	1	1	189	0	1	0	0	0	0	0	0	0	16398	841	29	3		3	TNFAIP6	2	152214116	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	10227300	152214116	90985257	192	150729											
TNFAIP6	7130	broad.mit.edu	37	chr2	152235871	152235871	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttttgcctccttccccGcaacaggaaatgtcatgacc	7	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152235871	T	T	152235871	1	4	189	0	1	0	0	0	0	0	0	0	16398	1102	38	3		3	TNFAIP6	2	152235871	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	21755	152235871	90963502	193	150730											
ACVR1	90	broad.mit.edu	37	chr2	158655925	158655925	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatcttaacccaaaaagaTgtgagtcacttaccttccat	4	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158655925	C	C	158655925	1	2	189	0	1	0	0	0	0	0	0	0	220	1479	51	5		5	ACVR1	2	158655925	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	6420054	158655925	84543448	194	150731											
TANC1	85461	broad.mit.edu	37	chr2	160042490	160042490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagattttagacagctctgTcagccatccaagaaacgctc	9	11	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160042490	A	A	160042490	1	1	189	0	1	0	0	0	0	0	0	0	15663	1682	58	5		5	TANC1	2	160042490	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1386565	160042490	83156883	195	150732											
BAZ2B	29994	broad.mit.edu	37	chr2	160182489	160182489	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactgtctacagacctattaTtttaaattatgaaagtctga	6	6	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160182489	A	A	160182489	1	1	189	0	1	0	0	0	0	0	0	0	1337	1508	52	5		5	BAZ2B	2	160182489	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	139999	160182489	83016884	196	150733											
DPP4	1803	broad.mit.edu	37	chr2	162894790	162894790	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttatagattttctgatttGaaaaagctttaaagtttcta	6	4	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	162894790	C	C	162894790	1	2	189	0	1	0	0	0	0	0	0	0	4769	1305	45	4		4	DPP4	2	162894790	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2712301	162894790	80304583	197	150734											
KCNH7	90134	broad.mit.edu	37	chr2	163257105	163257105	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctaccttaatgaatacttGatttgctaaacatgtcaaaa	5	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163257105	A	A	163257105	1	1	189	0	1	0	0	0	0	0	0	0	8107	1305	45	4		4	KCNH7	2	163257105	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	362315	163257105	79942268	198	150735											
SCN3A	6328	broad.mit.edu	37	chr2	165986887	165986887	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tattagtatgtggtatcataGaaccacacgtggtagatgta	10	5	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165986887	T	T	165986887	1	4	189	0	1	0	0	0	0	0	0	0	14031	957	33	3		3	SCN3A	2	165986887	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2729782	165986887	77212486	199	150736											
GALNT3	2591	broad.mit.edu	37	chr2	166605329	166605329	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatccatttttggagtggatCtgatgggttgcatgacacta	11	6	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166605329	G	G	166605329	3	3	189	1	0	0	0	0	1	0	0	0	6276	913	32	4	41	4	GALNT3	2	166605329	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	618442	166605329	76594044	200	150737											
LRP2	4036	broad.mit.edu	37	chr2	170002265	170002265	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggtgattacctgacttaTtgtatctgagttgatgaaag	11	4	1	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170002265	C	C	170002265	3	2	189	1	0	0	0	0	1	0	0	0	9043	1493	52	5	1027	5	LRP2	2	170002265	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	3396936	170002265	73197108	201	150738											
KBTBD10	10324	broad.mit.edu	37	chr2	170344726	170344726	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caccagggaccagtttcatgGaagacagtttttccacgaat	9	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170344726	A	A	170344726	1	1	189	0	1	0	0	0	0	0	0	0	8060	1189	41	4		4	KBTBD10	2	170344726	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	342461	170344726	72854647	202	150739											
MYO3B	140469	broad.mit.edu	37	chr2	171249021	171249021	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaaagtaagtgatgatcaaGagaggaactcaagtgacaat	10	5	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171249021	T	T	171249021	1	4	189	0	1	0	0	0	0	0	0	0	10171	957	33	3		3	MYO3B	2	171249021	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	904295	171249021	71950352	203	150740											
TTN	7273	broad.mit.edu	37	chr2	179449567	179449567	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtcacctcggcttacatCacacttctccactatataat	3	15	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179449567	T	T	179449567	3	4	189	1	0	0	0	0	1	0	0	0	16861	826	29	4	43390	4	TTN	2	179449567	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	8200546	179449567	63749806	204	150741											
ITGA4	3676	broad.mit.edu	37	chr2	182347392	182347392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcggtatgtccaagtgCcccaactggaagccatttat	10	11	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182347392	A	A	182347392	1	1	189	0	1	0	0	0	0	0	0	0	7948	754	26	3		3	ITGA4	2	182347392	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2897825	182347392	60851981	205	150742											
ZNF804A	91752	broad.mit.edu	37	chr2	185731105	185731106	+	Frame_Shift_Del	DEL	GA	-	-													ttatttttcaggactatgctGagaaggaaaataccatagca							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	185731106	-	-	185731105	7	5	189	1	0	1	0	1	0	0	0	0	18299	1291	45	0	127	0	ZNF804A	2	185731105	Frame_Shift_Del	DEL	GA	TCGA-64-5778-01A-01D-1625-08	3383713	185731105	57468268	206	150743											
COL3A1	1281	broad.mit.edu	37	chr2	189863350	189863350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatatttgcttatatttaCataaaatgcactctgatatg	4	6	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189863350	A	A	189863350	1	1	189	0	1	0	0	0	0	0	0	0	3720	493	17	3		3	COL3A1	2	189863350	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4132245	189863350	53336023	207	150744											
C2orf88	84281	broad.mit.edu	37	chr2	191064420	191064420	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaacctaccttctcttgaCaggtaaacactacacgtgaa	6	11	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191064420	G	G	191064420	1	3	189	0	1	0	0	0	0	0	0	0	2224	493	17	4		4	C2orf88	2	191064420	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1201070	191064420	52134953	208	150745											
DNAH7	56171	broad.mit.edu	37	chr2	196741505	196741505	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactaagcatcattactgaTagactcgaatttaaccttaa	4	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196741505	G	G	196741505	1	3	189	0	1	0	0	0	0	0	0	0	4646	1421	49	5		5	DNAH7	2	196741505	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	5677085	196741505	46457868	209	150746											
MARS2	92935	broad.mit.edu	37	chr2	198571111	198571111	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttcctgttaggggccGgcatgagcccgccacagcgc	13	16	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198571111	T	T	198571111	3	4	189	1	0	0	0	0	1	0	0	0	9409	1116	39	1	984	1	MARS2	2	198571111	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1829606	198571111	44628262	210	150747											
MARS2	92935	broad.mit.edu	37	chr2	198571470	198571470	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctcaggcagaggattaTgctctggtgagcgcagtggc	16	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198571470	A	A	198571470	4	1	189	1	0	0	0	0	0	1	0	0	9409	1471	51	5	1343	5	MARS2	2	198571470	Nonsense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	359	198571470	44627903	211	150748											
NDUFS1	4719	broad.mit.edu	37	chr2	207007395	207007395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaagcctagatcctagCttcatatttctcacccagct	6	12	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207007395	A	A	207007395	1	1	189	0	1	0	0	0	0	0	0	0	10386	812	28	3		3	NDUFS1	2	207007395	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	8435925	207007395	36191978	212	150749											
PIKFYVE	200576	broad.mit.edu	37	chr2	209134259	209134259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggtagtcctcatatgtGccttggttctgcttcttggc	10	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209134259	T	T	209134259	1	4	189	0	1	0	0	0	0	0	0	0	12019	1334	46	3		3	PIKFYVE	2	209134259	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2126864	209134259	34065114	213	150750											
PTH2R	5746	broad.mit.edu	37	chr2	209355333	209355333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgagtttctgagttgGcagtgggctgactttctctt	13	7	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209355333	T	T	209355333	1	4	189	0	1	0	0	0	0	0	0	0	12866	1218	42	3		3	PTH2R	2	209355333	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	221074	209355333	33844040	214	150751											
MAP2	4133	broad.mit.edu	37	chr2	210561338	210561338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagctgaaaaggaagctcGgagatcatctcttgagaaac	11	7	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210561338	T	T	210561338	3	4	189	1	0	0	0	0	1	0	0	0	9327	1116	39	1	4271	1	MAP2	2	210561338	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1206005	210561338	32638035	215	150752											
ERBB4	2066	broad.mit.edu	37	chr2	212522507	212522507	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggtaaagtggaatggcCcgtccatgggtagtaaatgc	14	6	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212522507	A	A	212522507	3	1	189	1	0	0	0	0	1	0	0	0	5251	623	22	2	2060	2	ERBB4	2	212522507	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1961169	212522507	30676866	216	150753											
PTPRN	5798	broad.mit.edu	37	chr2	220162048	220162048	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagctggggctggcctgGgctgcgtcgctgaactggga	20	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220162048	T	T	220162048	2	4	189	1	0	0	0	0	0	0	0	1	12915	1219	43	2		2	PTPRN	2	220162048	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	7639541	220162048	23037325	217	150754											
SPEG	10290	broad.mit.edu	37	chr2	220344800	220344800	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtactgccagtatggcacAcctgagtttgtagcacccga	10	12	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220344800	T	T	220344800	2	4	189	1	0	0	0	0	0	0	0	1	15154	146	6	5		5	SPEG	2	220344800	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	182752	220344800	22854573	218	150755											
SPEG	10290	broad.mit.edu	37	chr2	220354290	220354290	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccctccacgaagacacagGggcctgcaggctgcccggcc	12	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220354290	A	A	220354290	2	1	189	1	0	0	0	0	0	0	0	1	15154	1223	43	4		4	SPEG	2	220354290	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	9490	220354290	22845083	219	150756											
SLC4A3	6508	broad.mit.edu	37	chr2	220494042	220494042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccaggaggaggggggaGctggagtggatgaggaagag	21	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220494042	T	T	220494042	3	4	189	1	0	0	0	0	1	0	0	0	14769	971	34	3	404	3	SLC4A3	2	220494042	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	139752	220494042	22705331	220	150757											
SLC19A3	80704	broad.mit.edu	37	chr2	228566913	228566913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtcaggtttttatctggtCcagataaatatgggataagg	12	4	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228566913	A	A	228566913	3	1	189	1	0	0	0	0	1	0	0	0	14543	855	30	3	1388	3	SLC19A3	2	228566913	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	8072871	228566913	14632460	221	150758											
WDR69	164781	broad.mit.edu	37	chr2	228736386	228736386	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctacgaagcccatcggccGgggataagagagcaagaaaa	14	9	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228736386	C	C	228736386	1	2	189	0	1	0	0	0	0	0	0	0	17446	1131	39	4		4	WDR69	2	228736386	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	169473	228736386	14462987	222	150759											
CHRND	1144	broad.mit.edu	37	chr2	233391331	233391331	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccggcccgtggcacacaaaGaggagagtgtggacgttgcc	15	11	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233391331	T	T	233391331	4	4	189	1	0	0	0	0	0	1	0	0	3425	943	33	3	151	3	CHRND	2	233391331	Nonsense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4654945	233391331	9808042	223	150760											
GIGYF2	26058	broad.mit.edu	37	chr2	233613549	233613549	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaaatgtataaggactataGaagtcaattatggctgaata	8	4	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233613549	A	A	233613549	1	1	189	0	1	0	0	0	0	0	0	0	6442	957	33	4		4	GIGYF2	2	233613549	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	222218	233613549	9585824	224	150761											
UGT1A3	54659	broad.mit.edu	37	chr2	234637908	234637908	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccactggctcagcatgcggGaggtcttgcgggagctccat	15	12	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234637908	C	C	234637908	3	2	189	1	0	0	0	0	1	0	0	0	17072	1175	41	4	138	4	UGT1A3	2	234637908	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1024359	234637908	8561465	225	150762											
SPP2	6694	broad.mit.edu	37	chr2	234967486	234967486	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatttttgtgaaggttgagGtcctagatgagaacaacttg	11	4	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234967486	T	T	234967486	3	4	189	1	0	0	0	0	1	0	0	0	15205	1261	44	3	227	3	SPP2	2	234967486	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	329578	234967486	8231887	226	150763											
RAMP1	10267	broad.mit.edu	37	chr2	238820077	238820077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagccaagcttcagggctGcatgaggggccacggtgcag	16	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238820077	T	T	238820077	1	4	189	0	1	0	0	0	0	0	0	0	13129	1334	46	3		3	RAMP1	2	238820077	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3852591	238820077	4379296	227	150764											
KIF1A	547	broad.mit.edu	37	chr2	241706739	241706739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacatcagcgggtcctcGttcaggttgacgaggtgtgg	15	9	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241706739	T	T	241706739	3	4	189	1	0	0	0	0	1	0	0	0	8353	1136	40	3	3702	3	KIF1A	2	241706739	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2886662	241706739	1492634	228	150765											
ANO7	50636	broad.mit.edu	37	chr2	242135417	242135417	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccaccgtgagctcctccGtgtggctagggagctgctgt	14	13	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242135417	T	T	242135417	1	4	189	0	1	0	0	0	0	0	0	0	702	1160	40	3		3	ANO7	2	242135417	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	428678	242135417	1063956	229	150766											
C2orf85	285093	broad.mit.edu	37	chr2	242814381	242814382	+	Missense_Mutation	DNP	CT	AA	AA													cgctgagggccctgccccccCtgcgggggcctctctccctg							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	242814382	AA	AA	242814381	3	1	189	1	0	0	0	0	1	0	0	0	2222	681	24	2	680	2	C2orf85	2	242814381	Missense_Mutation	DNP	CT	TCGA-64-5778-01A-01D-1625-08	678964	242814381	384992	230	150767											
CHL1	10752	broad.mit.edu	37	chr3	440756	440756	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggtttattggactgatgTgtgcgattgctcttctcaca	11	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	440756	A	A	440756	3	1	189	1	0	0	0	0	1	0	0	0	3380	1696	59	5	3404	5	CHL1	3	440756	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08		440756	197581674	231	150768											
GRM7	2917	broad.mit.edu	37	chr3	7722034	7722034	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctgcatcaggaagctctAgaagatgtggggtgtgcttg	14	8	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7722034	G	G	7722034	1	3	189	0	1	0	0	0	0	0	0	0	6868	435	15	5		5	GRM7	3	7722034	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	7281278	7722034	190300396	232	150769											
TTLL3	26140	broad.mit.edu	37	chr3	9869038	9869038	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgctaggctccacacacagActgcaggcaggcaggccctc	12	16	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9869038	T	T	9869038	1	4	189	0	1	0	0	0	0	0	0	0	16854	290	10	5		5	TTLL3	3	9869038	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2147004	9869038	188153392	233	150770											
SLC6A11	6538	broad.mit.edu	37	chr3	10971122	10971122	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgacccgggtcaggtctAgtgccctctgccactcggtt	13	13	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971122	T	T	10971122	1	4	189	0	1	0	0	0	0	0	0	0	14788	435	15	5		5	SLC6A11	3	10971122	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	1102084	10971122	187051308	234	150771											
PPARG	5468	broad.mit.edu	37	chr3	12475578	12475578	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgcagctactgcaggtgatCaagaagacggagacagacat	13	8	1	5	rs149367249	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12475578	A	A	12475578	2	1	189	1	0	0	0	0	0	0	0	1	12395	816	29	3		3	PPARG	3	12475578	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	1504456	12475578	185546852	235	150772											
NUP210	23225	broad.mit.edu	37	chr3	13384657	13384657	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagccgagggtgccccgtCatgaagcttccactgacctt	11	14	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13384657	T	T	13384657	1	4	189	0	1	0	0	0	0	0	0	0	10855	841	29	4		4	NUP210	3	13384657	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	909079	13384657	184637773	236	150773											
GRIP2	80852	broad.mit.edu	37	chr3	14555336	14555336	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgaacccagggggcccGgcagagagaagaggctccgt	15	13	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14555336	A	A	14555336	1	1	189	0	1	0	0	0	0	0	0	0	6854	1131	39	4		4	GRIP2	3	14555336	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1170679	14555336	183467094	237	150774											
C3orf20	84077	broad.mit.edu	37	chr3	14763190	14763190	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaaactaaaggtactgGgacaggactccatcacagtc	9	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14763190	T	T	14763190	4	4	189	1	0	0	0	0	0	1	0	0	2235	1233	43	2	1495	2	C3orf20	3	14763190	Nonsense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	207854	14763190	183259240	238	150775											
COLQ	8292	broad.mit.edu	37	chr3	15531040	15531040	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtactcaccggacttcGgccacctctgaagaatggtg	10	12	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15531040	T	T	15531040	2	4	189	1	0	0	0	0	0	0	0	1	3745	1124	39	1		1	COLQ	3	15531040	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	767850	15531040	182491390	239	150776											
ANKRD28	23243	broad.mit.edu	37	chr3	15754943	15754943	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacaacattgaggataaaatCcacatttccacgtgaaatgt	6	8	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15754943	T	T	15754943	1	4	189	0	1	0	0	0	0	0	0	0	656	870	30	4		4	ANKRD28	3	15754943	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	223903	15754943	182267487	240	150777											
SLC4A7	9497	broad.mit.edu	37	chr3	27439621	27439621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattactgttttgaaataaaCcaaggaaataaaaaccaaaa	4	5	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27439621	A	A	27439621	1	1	189	0	1	0	0	0	0	0	0	0	14772	522	18	3		3	SLC4A7	3	27439621	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	11684678	27439621	170582809	241	150778											
SLC4A7	9497	broad.mit.edu	37	chr3	27475315	27475315	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagaggtaggtatagtgagTgtttaaatatccccaaatgt	10	5	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27475315	G	G	27475315	1	3	189	0	1	0	0	0	0	0	0	0	14772	1711	59	5		5	SLC4A7	3	27475315	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	35694	27475315	170547115	242	150779											
FBXL2	25827	broad.mit.edu	37	chr3	33339139	33339139	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacattttcacaatttccttTttttttttctttccaggttt	2	8	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33339139	C	C	33339139	1	2	189	0	1	0	0	0	0	0	0	0	5773	1856	64	5		5	FBXL2	3	33339139	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	5863824	33339139	164683291	243	150780											
ARPP21	10777	broad.mit.edu	37	chr3	35781039	35781039	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccccctccctcaccacaGggatttgtgcaacagcctcc	7	19	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35781039	C	C	35781039	3	2	189	1	0	0	0	0	1	0	0	0	982	991	35	4	1946	4	ARPP21	3	35781039	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2441900	35781039	162241391	244	150781											
ARPP21	10777	broad.mit.edu	37	chr3	35835223	35835223	+	Frame_Shift_Del	DEL	C	-	-													cccagggttctcaaggactgCcccagcagtcataccaacag							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35835223	-	-	35835223	7	5	189	1	0	1	0	1	0	0	0	0	982	739	26	0	2295	0	ARPP21	3	35835223	Frame_Shift_Del	DEL	C	TCGA-64-5778-01A-01D-1625-08	54184	35835223	162187207	245	150782											
TRAK1	22906	broad.mit.edu	37	chr3	42226214	42226214	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attggccgctcgcatcggccAgtcgttgttgaagaagaaca	12	10	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42226214	T	T	42226214	3	4	189	1	0	0	0	0	1	0	0	0	16573	188	7	5	531	5	TRAK1	3	42226214	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	6390991	42226214	155796216	246	150783											
ZNF167	55888	broad.mit.edu	37	chr3	44620971	44620971	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcagggtccggctcccccGgctctgcctcttgcttctca	10	18	4	0	rs140588913	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44620971	A	A	44620971	1	1	189	0	1	0	0	0	0	0	0	0	17867	1131	39	4		4	ZNF167	3	44620971	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2394757	44620971	153401459	247	150784											
CCR3	1232	broad.mit.edu	37	chr3	46307361	46307361	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaaaaagtacaaggccAtccggctcatttttgtcatc	7	9	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46307361	G	G	46307361	3	3	189	1	0	0	0	0	1	0	0	0	2972	217	8	5	781	5	CCR3	3	46307361	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	1686390	46307361	151715069	248	150785											
LTF	4057	broad.mit.edu	37	chr3	46492017	46492017	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagaagattccagatggcatCctccttgccattcacacttc	7	13	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46492017	G	G	46492017	3	3	189	1	0	0	0	0	1	0	0	0	9166	855	30	4	1326	4	LTF	3	46492017	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	184656	46492017	151530413	249	150786											
MAP4	4134	broad.mit.edu	37	chr3	47913670	47913670	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacaagatgcttcttttttTgtttgttttgttttgttttt	6	4	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47913670	G	G	47913670	1	3	189	0	1	0	0	0	0	0	0	0	9350	1827	63	5		5	MAP4	3	47913670	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1421653	47913670	150108760	250	150787											
FBXW12	285231	broad.mit.edu	37	chr3	48423106	48423106	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactatgcttttttattcaGtgtgaggatattattattca	8	4	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48423106	T	T	48423106	1	4	189	0	1	0	0	0	0	0	0	0	5822	1044	36	3		3	FBXW12	3	48423106	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	509436	48423106	149599324	251	150788											
COL7A1	1294	broad.mit.edu	37	chr3	48612109	48612109	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggtggagagaggcctcaCcctgtctcctttgggacctt	13	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48612109	G	G	48612109	5	3	189	1	0	0	0	0	0	0	1	0	3736	521	18	4	2608	4	COL7A1	3	48612109	Splice_Site	SNP	C	TCGA-64-5778-01A-01D-1625-08	189003	48612109	149410321	252	150789											
COL7A1	1294	broad.mit.edu	37	chr3	48613764	48613764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaactgctaggaaccagcCtatgggtgtgcatgtgcaca	11	10	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48613764	A	A	48613764	1	1	189	0	1	0	0	0	0	0	0	0	3736	696	24	2		2	COL7A1	3	48613764	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1655	48613764	149408666	253	150790											
CELSR3	1951	broad.mit.edu	37	chr3	48688324	48688324	+	Splice_Site	DEL	C	-	-													agctgggtggagcctgctcaCcccggcagccgctggctgtc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48688324	-	-	48688324	8	5	189	1	0	1	0	1	0	0	1	0	3253	521	18	0	3651	0	CELSR3	3	48688324	Splice_Site	DEL	C	TCGA-64-5778-01A-01D-1625-08	74560	48688324	149334106	254	150791											
CELSR3	1951	broad.mit.edu	37	chr3	48696237	48696237	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaaggcttagaaatccctCtttggtttgaggtgccctgt	12	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48696237	T	T	48696237	1	4	189	0	1	0	0	0	0	0	0	0	3253	928	32	4		4	CELSR3	3	48696237	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	7913	48696237	149326193	255	150792											
CELSR3	1951	broad.mit.edu	37	chr3	48697761	48697761	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accacactggtgcccacagcTgcatcctcattcagtcgtag	8	15	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48697761	A	A	48697761	2	1	189	1	0	0	0	0	0	0	0	1	3253	1567	55	5		5	CELSR3	3	48697761	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	1524	48697761	149324669	256	150793											
RNF123	63891	broad.mit.edu	37	chr3	49735706	49735706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctctggagaagaaacgtGtcccacccaatcccaggcac	9	16	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49735706	T	T	49735706	1	4	189	0	1	0	0	0	0	0	0	0	13544	1392	48	3		3	RNF123	3	49735706	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1037945	49735706	148286724	257	150794											
RNF123	63891	broad.mit.edu	37	chr3	49749945	49749945	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatctactggctgctgcgcGtctgcctgcggaccattgag	12	13	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49749945	A	A	49749945	3	1	189	1	0	0	0	0	1	0	0	0	13544	1145	40	4	2632	4	RNF123	3	49749945	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	14239	49749945	148272485	258	150795											
ITIH1	3697	broad.mit.edu	37	chr3	52825805	52825805	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctctgcacaggggtttgCaaaaagactacagcaaggac	11	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825805	T	T	52825805	4	4	189	1	0	0	0	0	0	1	0	0	7973	711	25	4	2700	4	ITIH1	3	52825805	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3075860	52825805	145196625	259	150796											
FHIT	2272	broad.mit.edu	37	chr3	59908137	59908137	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaagaacatggacgtgaaCgtgctgaaaatgtacaagaa	13	5	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59908137	G	G	59908137	3	3	189	1	0	0	0	0	1	0	0	0	5934	536	19	4	168	4	FHIT	3	59908137	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	7082332	59908137	138114293	260	150797											
PTPRG	5793	broad.mit.edu	37	chr3	61989206	61989206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctcaacgtgtagctgtGcttcggtctttatgttaatc	9	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61989206	T	T	61989206	1	4	189	0	1	0	0	0	0	0	0	0	12910	1334	46	3		3	PTPRG	3	61989206	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2081069	61989206	136033224	261	150798											
CADPS	8618	broad.mit.edu	37	chr3	62751616	62751616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttccccattgaggaaaGcctgaaaccggtccttgact	11	11	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62751616	T	T	62751616	3	4	189	1	0	0	0	0	1	0	0	0	2596	971	34	3	3765	3	CADPS	3	62751616	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	762410	62751616	135270814	262	150799											
ADAMTS9	56999	broad.mit.edu	37	chr3	64527523	64527523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaacttacagttatagaCattacggcaggtttttcgtt	9	8	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64527523	A	A	64527523	3	1	189	1	0	0	0	0	1	0	0	0	273	478	17	3	647	3	ADAMTS9	3	64527523	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1775907	64527523	133494907	263	150800											
ADAMTS9	56999	broad.mit.edu	37	chr3	64547236	64547236	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgcctggcaggtacccCtttgtggctctacttacttc	9	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64547236	T	T	64547236	1	4	189	0	1	0	0	0	0	0	0	0	273	696	24	4		4	ADAMTS9	3	64547236	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	19713	64547236	133475194	264	150801											
MAGI1	9223	broad.mit.edu	37	chr3	65350184	65350184	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaataacatgttatttccTagacaatcaaatgtaagtat	4	5	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65350184	C	C	65350184	1	2	189	0	1	0	0	0	0	0	0	0	9282	1537	53	5		5	MAGI1	3	65350184	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	802948	65350184	132672246	265	150802											
PDZRN3	23024	broad.mit.edu	37	chr3	73432672	73432672	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggctcagttcgagaatgttCatctccttcctgtcatcggc	9	12	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73432672	A	A	73432672	3	1	189	1	0	0	0	0	1	0	0	0	11803	826	29	3	159	3	PDZRN3	3	73432672	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	8082488	73432672	124589758	266	150803											
CNTN3	5067	broad.mit.edu	37	chr3	74414933	74414933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttattattttattatcttaCctggattaatagaaatggac	5	4	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74414933	A	A	74414933	1	1	189	0	1	0	0	0	0	0	0	0	3674	522	18	3		3	CNTN3	3	74414933	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	982261	74414933	123607497	267	150804											
VGLL3	389136	broad.mit.edu	37	chr3	86996309	86996309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatacattggatatagaaaCcaaaatgataatccaggcaa	6	7	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86996309	A	A	86996309	1	1	189	0	1	0	0	0	0	0	0	0	17287	522	18	3		3	VGLL3	3	86996309	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	12581376	86996309	111026121	268	150805											
HTR1F	3355	broad.mit.edu	37	chr3	88041054	88041054	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaggggaggaataactAgatgaatgccaaataataaa	10	3	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88041054	G	G	88041054	1	3	189	0	1	0	0	0	0	0	0	0	7510	435	15	5		5	HTR1F	3	88041054	3'UTR	SNP	A	TCGA-64-5778-01A-01D-1625-08	1044745	88041054	109981376	269	150806											
EPHA6	285220	broad.mit.edu	37	chr3	97251300	97251300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtggccacatggatcggCaaagaagagattttctaaga	12	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97251300	A	A	97251300	3	1	189	1	0	0	0	0	1	0	0	0	5213	711	25	3	2409	3	EPHA6	3	97251300	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	9210246	97251300	100771130	270	150807											
TBC1D23	55773	broad.mit.edu	37	chr3	100018212	100018213	+	Intron	INS	-	T	T													ttaattattcttaaagtaacINStttttttccttcagttcata							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100018213	T	T	100018212	6	5	189	0	1	1	1	0	0	0	0	0	15732	580	20	0		0	TBC1D23	3	100018212	Intron	INS	-	TCGA-64-5778-01A-01D-1625-08	2766912	100018212	98004218	271	150808											
IMPG2	50939	broad.mit.edu	37	chr3	100962638	100962638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctgatagtaatctgtgCctatccggtccagttctaac	9	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100962638	A	A	100962638	3	1	189	1	0	0	0	0	1	0	0	0	7799	739	26	3	1216	3	IMPG2	3	100962638	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	944426	100962638	97059792	272	150809											
BBX	56987	broad.mit.edu	37	chr3	107524268	107524268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagccaaaagaaatgccGcaggctcctgtacttatttc	9	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107524268	T	T	107524268	2	4	189	1	0	0	0	0	0	0	0	1	1348	1074	38	3		3	BBX	3	107524268	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	6561630	107524268	90498162	273	150810											
DZIP3	9666	broad.mit.edu	37	chr3	108363427	108363427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgagattttgatgaatGgtctcactgagtcacagttc	10	6	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108363427	T	T	108363427	3	4	189	1	0	0	0	0	1	0	0	0	4905	1348	47	2	1608	2	DZIP3	3	108363427	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	839159	108363427	89659003	274	150811											
GUCA1C	9626	broad.mit.edu	37	chr3	108626994	108626994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcgaagctcttgtaaaCaatctccaggagatcctgat	9	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108626994	A	A	108626994	3	1	189	1	0	0	0	0	1	0	0	0	6955	478	17	3	128	3	GUCA1C	3	108626994	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	263567	108626994	89395436	275	150812											
BOC	91653	broad.mit.edu	37	chr3	112991178	112991178	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatcccatctccatgctctCtgggactgcctcctgggcat	9	15	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112991178	T	T	112991178	1	4	189	0	1	0	0	0	0	0	0	0	1487	928	32	4		4	BOC	3	112991178	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4364184	112991178	85031252	276	150813											
ATP6V1A	523	broad.mit.edu	37	chr3	113508566	113508566	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagattcactaatatatAttttacctctagctcacaat	4	8	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113508566	G	G	113508566	1	3	189	0	1	0	0	0	0	0	0	0	1181	464	16	5		5	ATP6V1A	3	113508566	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	517388	113508566	84513864	277	150814											
DRD3	1814	broad.mit.edu	37	chr3	113866429	113866429	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcaaggggagaggggaTaggcatggtgagatggaatg	19	2	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113866429	A	A	113866429	1	1	189	0	1	0	0	0	0	0	0	0	4798	1421	49	5		5	DRD3	3	113866429	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	357863	113866429	84156001	278	150815											
IGSF11	152404	broad.mit.edu	37	chr3	118624546	118624546	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcactgatgttccggatggtGactgttccctggacctggtc	13	11	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118624546	T	T	118624546	2	4	189	1	0	0	0	0	0	0	0	1	7668	1277	45	3		3	IGSF11	3	118624546	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	4758117	118624546	79397884	279	150816											
DIRC2	84925	broad.mit.edu	37	chr3	122575272	122575272	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagagcagggggaaaaagcCtaaagataaataggctcccc	11	9	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122575272	T	T	122575272	1	4	189	0	1	0	0	0	0	0	0	0	4574	696	24	4		4	DIRC2	3	122575272	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3950726	122575272	75447158	280	150817											
MYLK	4638	broad.mit.edu	37	chr3	123332912	123332912	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagttttagagaaatagtccTtttaatatgacttagaaact	7	4	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123332912	A	A	123332912	1	1	189	0	1	0	0	0	0	0	0	0	10150	1624	56	5		5	MYLK	3	123332912	3'UTR	SNP	T	TCGA-64-5778-01A-01D-1625-08	757640	123332912	74689518	281	150818											
MYLK	4638	broad.mit.edu	37	chr3	123454407	123454407	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgaacgtctttggcctttGaactccccccagccctagag	9	15	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123454407	A	A	123454407	1	1	189	0	1	0	0	0	0	0	0	0	10150	1305	45	4		4	MYLK	3	123454407	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	121495	123454407	74568023	282	150819											
IL20RB	53833	broad.mit.edu	37	chr3	136714381	136714381	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcctgttgccccgtggtgGtcctcccagacaccttggta	10	15	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136714381	A	A	136714381	3	1	189	1	0	0	0	0	1	0	0	0	7739	1261	44	4	830	4	IL20RB	3	136714381	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	13259974	136714381	61308049	283	150820											
ARMC8	25852	broad.mit.edu	37	chr3	137960639	137960639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagacattaccttgtttGgttcgaatgtgcagtaagga	10	6	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137960639	T	T	137960639	3	4	189	1	0	0	0	0	1	0	0	0	961	1339	47	2	852	2	ARMC8	3	137960639	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1246258	137960639	60061791	284	150821											
MED12L	116931	broad.mit.edu	37	chr3	150881607	150881607	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagtgatgacagggtgtcGtttttactgtttagctattg	11	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150881607	A	A	150881607	1	1	189	0	1	0	0	0	0	0	0	0	9522	1160	40	4		4	MED12L	3	150881607	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	12920968	150881607	47140823	285	150822											
MED12L	116931	broad.mit.edu	37	chr3	151095977	151095977	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggtgtggctggaagatGggcgtctgtgtgagagttta	17	3	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151095977	A	A	151095977	1	1	189	0	1	0	0	0	0	0	0	0	9522	1363	47	4		4	MED12L	3	151095977	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	214370	151095977	46926453	286	150823											
P2RY1	5028	broad.mit.edu	37	chr3	152554645	152554645	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagagtgaagacatgacCctcaatattttacctgagtt	7	9	1	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152554645	T	T	152554645	2	4	189	1	0	0	0	0	0	0	0	1	11440	610	22	4		4	P2RY1	3	152554645	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	1458668	152554645	45467785	287	150824											
GPR149	344758	broad.mit.edu	37	chr3	154147360	154147360	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattatgattctctttccaCaggctagagtcatttgttga	8	7	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154147360	A	A	154147360	2	1	189	1	0	0	0	0	0	0	0	1	6719	465	17	3		3	GPR149	3	154147360	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	1592715	154147360	43875070	288	150825											
RSRC1	51319	broad.mit.edu	37	chr3	157993812	157993812	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatggaatggattaatgaGgatagcctcaaaaaatttct	8	4	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157993812	A	A	157993812	1	1	189	0	1	0	0	0	0	0	0	0	13825	1015	35	4		4	RSRC1	3	157993812	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3846452	157993812	40028618	289	150826											
IQCJ	654502	broad.mit.edu	37	chr3	158983125	158983125	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaccagcttgccagacCcactgggttcatacatactc	7	15	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158983125	T	T	158983125	3	4	189	1	0	0	0	0	1	0	0	0	7882	623	22	4	479	4	IQCJ	3	158983125	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	989313	158983125	39039305	290	150827											
SI	6476	broad.mit.edu	37	chr3	164757588	164757588	+	Intron	DEL	C	-	-													tgaaacagtccactgagtaaCatctattattcagatgtttt							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	164757588	-	-	164757588	6	5	189	0	1	1	0	1	0	0	0	0	14410	493	17	0		0	SI	3	164757588	Intron	DEL	C	TCGA-64-5778-01A-01D-1625-08	5774463	164757588	33264842	291	150828											
SLITRK3	22865	broad.mit.edu	37	chr3	164908507	164908507	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagggctcatctatttcctCtgagtcctctattaggggaa	9	10	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164908507	G	G	164908507	3	3	189	1	0	0	0	0	1	0	0	0	14858	922	32	4	2825	4	SLITRK3	3	164908507	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	150919	164908507	33113923	292	150829											
ZBBX	79740	broad.mit.edu	37	chr3	167086370	167086370	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgagcatttctgaagaCataagatttaaatggagaaa	8	4	2	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167086370	T	T	167086370	1	4	189	0	1	0	0	0	0	0	0	0	17643	493	17	4		4	ZBBX	3	167086370	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2177863	167086370	30936060	293	150830											
PRKCI	5584	broad.mit.edu	37	chr3	170009803	170009803	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtaccaattgcattacAgtacactaatgcattttgac	7	8	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170009803	C	C	170009803	1	2	189	0	1	0	0	0	0	0	0	0	12620	203	7	5		5	PRKCI	3	170009803	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2923433	170009803	28012627	294	150831											
SLC2A2	6514	broad.mit.edu	37	chr3	170732587	170732587	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttttgtttttgtctttaaAgtgtttgttacgtgtttaaa	7	2	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170732587	T	T	170732587	1	4	189	0	1	0	0	0	0	0	0	0	14658	87	3	5		5	SLC2A2	3	170732587	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	722784	170732587	27289843	295	150832											
KLHL6	89857	broad.mit.edu	37	chr3	183273169	183273169	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaatagttgctggctgcGgcaagcaccacgcggtggca	14	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183273169	T	T	183273169	2	4	189	1	0	0	0	0	0	0	0	1	8464	1103	39	1		1	KLHL6	3	183273169	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	12540582	183273169	14749261	296	150833											
HTR3C	170572	broad.mit.edu	37	chr3	183773239	183773239	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggccagaagcagtggctcaCgcctgtaatcccagcacttt	11	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183773239	G	G	183773239	1	3	189	0	1	0	0	0	0	0	0	0	7516	551	19	4		4	HTR3C	3	183773239	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	500070	183773239	14249191	297	150834											
HRG	3273	broad.mit.edu	37	chr3	186383748	186383748	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaaggttttgtttaatcaAttgcgtgtgtttcagaaagt	9	4	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186383748	T	T	186383748	1	4	189	0	1	0	0	0	0	0	0	0	7421	116	4	5		5	HRG	3	186383748	5'Flank	SNP	A	TCGA-64-5778-01A-01D-1625-08	2610509	186383748	11638682	298	150835											
CLDN1	9076	broad.mit.edu	37	chr3	190026244	190026244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtacctaaaaggaaaaaccCatgtgcttgttaatcagtga	8	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190026244	A	A	190026244	1	1	189	0	1	0	0	0	0	0	0	0	3502	609	21	2		2	CLDN1	3	190026244	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3642496	190026244	7996186	299	150836											
TFRC	7037	broad.mit.edu	37	chr3	195791401	195791401	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaagcacagtatatgtaTtaaggataaaagagccttac	8	5	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	195791401	C	C	195791401	1	2	189	0	1	0	0	0	0	0	0	0	15935	1508	52	5		5	TFRC	3	195791401	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	5765157	195791401	2231029	300	150837											
ZNF595	152687	broad.mit.edu	37	chr4	64918	64918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggccaagatctgcaggCctgcctccagggccatggct	13	13	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64918	A	A	64918	1	1	189	0	1	0	0	0	0	0	0	0	18152	754	26	3		3	ZNF595	4	64918	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08		64918	191089358	301	150838											
HTT	3064	broad.mit.edu	37	chr4	3142434	3142434	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgggaaaatgccctttcctGatgcctttctttaggcttta	8	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3142434	T	T	3142434	1	4	189	0	1	0	0	0	0	0	0	0	7527	1305	45	3		3	HTT	4	3142434	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3077516	3142434	188011842	302	150839											
C4orf44	345222	broad.mit.edu	37	chr4	3255175	3255175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttcgaggatgatcgctccGacagctcctccagcttactg	10	14	0	1	rs138360402		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3255175	T	T	3255175	3	4	189	1	0	0	0	0	1	0	0	0	2295	1058	37	3	568	3	C4orf44	4	3255175	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	112741	3255175	187899101	303	150840											
RGS12	6002	broad.mit.edu	37	chr4	3314173	3314173	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacactgtggacctgtgagGgtgtgagggttgcgttcctg	17	7	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3314173	T	T	3314173	1	4	189	0	1	0	0	0	0	0	0	0	13404	1247	43	2		2	RGS12	4	3314173	5'Flank	SNP	G	TCGA-64-5778-01A-01D-1625-08	58998	3314173	187840103	304	150841											
ADRA2C	152	broad.mit.edu	37	chr4	3769638	3769638	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacagctcgctcaacccggtCatctacacggtcttcaacca	6	16	5	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3769638	A	A	3769638	2	1	189	1	0	0	0	0	0	0	0	1	339	813	29	3		3	ADRA2C	4	3769638	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	455465	3769638	187384638	305	150842											
EVC2	132884	broad.mit.edu	37	chr4	5570329	5570330	+	Missense_Mutation	DNP	CA	AT	AT													cgaagcgtggccccgggcacCatggccatcctcgccaggta							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	5570330	AT	AT	5570329	3	1	189	1	0	0	0	0	1	0	0	0	5328	594	21	2	539	2	EVC2	4	5570329	Missense_Mutation	DNP	CA	TCGA-64-5778-01A-01D-1625-08	1800691	5570329	185583947	306	150843											
ABLIM2	84448	broad.mit.edu	37	chr4	8082493	8082493	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccaaggctaccagggccTggccattcttgatttctgtg	11	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8082493	A	A	8082493	3	1	189	1	0	0	0	0	1	0	0	0	95	1580	55	5	1568	5	ABLIM2	4	8082493	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	2512164	8082493	183071783	307	150844											
RAB28	9364	broad.mit.edu	37	chr4	13371634	13371634	+	Intron	DEL	A	-	-													gagacaaagaaaaaagaattAaaaaaaaaaagacaaaatgg							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13371634	-	-	13371634	6	5	189	0	1	1	0	1	0	0	0	0	13024	377	13	0		0	RAB28	4	13371634	Intron	DEL	A	TCGA-64-5778-01A-01D-1625-08	5289141	13371634	177782642	308	150845											
BST1	683	broad.mit.edu	37	chr4	15724522	15724522	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagctcttacagtgcgtGgaccacagcacccatcctga	10	13	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15724522	C	C	15724522	2	2	189	1	0	0	0	0	0	0	0	1	1542	1335	47	4		4	BST1	4	15724522	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	2352888	15724522	175429754	309	150846											
CD38	952	broad.mit.edu	37	chr4	15850294	15850294	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catcatacatgactcagcatAcctgctggtgcagagctgaa	9	11	2	3	rs80225519		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15850294	T	T	15850294	1	4	189	0	1	0	0	0	0	0	0	0	3039	406	14	5		5	CD38	4	15850294	3'UTR	SNP	A	TCGA-64-5778-01A-01D-1625-08	125772	15850294	175303982	310	150847											
LCORL	254251	broad.mit.edu	37	chr4	17910869	17910869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctattctcttgagttttaCcactttttgaaatgtactca	4	8	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17910869	A	A	17910869	3	1	189	1	0	0	0	0	1	0	0	0	8762	507	18	3	1475	3	LCORL	4	17910869	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2060575	17910869	173243407	311	150848											
SLIT2	9353	broad.mit.edu	37	chr4	20550132	20550132	+	Frame_Shift_Del	DEL	A	-	-													gacttaagtaacaacagaatAagcacgctttctaatcagag							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20550132	-	-	20550132	7	5	189	1	0	1	0	1	0	0	0	0	14854	352	13	0	2457	0	SLIT2	4	20550132	Frame_Shift_Del	DEL	A	TCGA-64-5778-01A-01D-1625-08	2639263	20550132	170604144	312	150849											
GBA3	57733	broad.mit.edu	37	chr4	22737808	22737808	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtctgttacctgatgggaCgacaggtttcatcaaccaga	10	10	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22737808	A	A	22737808	3	1	189	1	0	0	0	0	1	0	0	0	6330	536	19	3	269	3	GBA3	4	22737808	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2187676	22737808	168416468	313	150850											
GBA3	57733	broad.mit.edu	37	chr4	22820507	22820507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcggccaaggaataagcCaagatcatccgaaacaatgg	9	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22820507	A	A	22820507	2	1	189	1	0	0	0	0	0	0	0	1	6330	581	21	2		2	GBA3	4	22820507	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	82699	22820507	168333769	314	150851											
PDS5A	23244	broad.mit.edu	37	chr4	39875863	39875863	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcatcaaactatagagctTaaaaaataaagaccaatata	3	7	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39875863	A	A	39875863	1	1	189	0	1	0	0	0	0	0	0	0	11785	1769	61	5		5	PDS5A	4	39875863	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	17055356	39875863	151278413	315	150852											
GRXCR1	389207	broad.mit.edu	37	chr4	43032469	43032470	+	Missense_Mutation	DNP	GA	TT	TT													gagcaagatgtccatgtttcGaaactgcttcacagactctt					rs146696590	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43032470	TT	TT	43032469	3	4	189	1	0	0	0	0	1	0	0	0	6878	1058	37	3	799	3	GRXCR1	4	43032469	Missense_Mutation	DNP	GA	TCGA-64-5778-01A-01D-1625-08	3156606	43032469	148121807	316	150853											
YIPF7	285525	broad.mit.edu	37	chr4	44624425	44624425	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgaaatgccatctcaaaCattctttagaaaattgttag	5	7	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44624425	A	A	44624425	1	1	189	0	1	0	0	0	0	0	0	0	17610	493	17	3		3	YIPF7	4	44624425	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	1591956	44624425	146529851	317	150854											
GABRG1	2565	broad.mit.edu	37	chr4	46066551	46066551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtcaatctatttagatGgaaagaaaagtattaaataa	6	2	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066551	T	T	46066551	1	4	189	0	1	0	0	0	0	0	0	0	6231	1363	47	2		2	GABRG1	4	46066551	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1442126	46066551	145087725	318	150855											
GABRG1	2565	broad.mit.edu	37	chr4	46066621	46066621	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgtctcattttaaaacaaGattttgtcatatgataatag	5	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46066621	T	T	46066621	1	4	189	0	1	0	0	0	0	0	0	0	6231	957	33	3		3	GABRG1	4	46066621	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	70	46066621	145087655	319	150856											
CORIN	10699	broad.mit.edu	37	chr4	47605309	47605309	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtttcctgaggcctccccAtccctgcagaactgtgaatc	9	14	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47605309	T	T	47605309	1	4	189	0	1	0	0	0	0	0	0	0	3784	232	8	5		5	CORIN	4	47605309	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	1538688	47605309	143548967	320	150857											
TEC	7006	broad.mit.edu	37	chr4	48170598	48170598	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcaaaagctaaagaccaCctaccttctttgtttctggt	5	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48170598	A	A	48170598	1	1	189	0	1	0	0	0	0	0	0	0	15864	522	18	3		3	TEC	4	48170598	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	565289	48170598	142983678	321	150858											
PDGFRA	5156	broad.mit.edu	37	chr4	55144486	55144486	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caattcatggcttttctgttCttcattttcatacccatctc	3	12	6	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55144486	A	A	55144486	1	1	189	0	1	0	0	0	0	0	0	0	11755	928	32	3		3	PDGFRA	4	55144486	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	6973888	55144486	136009790	322	150859											
KDR	3791	broad.mit.edu	37	chr4	55946163	55946163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctggagaatctgggctGtgctaccggtttgcactcca	13	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55946163	T	T	55946163	3	4	189	1	0	0	0	0	1	0	0	0	8209	1377	48	3	58	3	KDR	4	55946163	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	801677	55946163	135208113	323	150860											
KDR	3791	broad.mit.edu	37	chr4	55976691	55976691	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcgtcagtacatgccccgcTttaattgtgtgattggactc	9	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55976691	A	A	55976691	3	1	189	1	0	0	0	0	1	0	0	0	8209	1606	56	5	3024	5	KDR	4	55976691	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	30528	55976691	135177585	324	150861											
LPHN3	23284	broad.mit.edu	37	chr4	62599218	62599218	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctactttatgtatggaatAactatcacgtcgtgaaatat	6	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62599218	C	C	62599218	3	2	189	1	0	0	0	0	1	0	0	0	9004	362	13	5	1159	5	LPHN3	4	62599218	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	6622527	62599218	128555058	325	150862											
LPHN3	23284	broad.mit.edu	37	chr4	62849024	62849024	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgcagttttggtaaataTttaatttggttttatggcag	9	2	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62849024	G	G	62849024	1	3	189	0	1	0	0	0	0	0	0	0	9004	1508	52	5		5	LPHN3	4	62849024	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	249806	62849024	128305252	326	150863											
SEPT11	55752	broad.mit.edu	37	chr4	77949619	77949619	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcacttgtctttccaaccAcagcataactaaaagcaaaa	4	11	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77949619	T	T	77949619	1	4	189	0	1	0	0	0	0	0	0	0	14174	174	6	5		5	SEPT11	4	77949619	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	15100595	77949619	113204657	327	150864											
PKD2	5311	broad.mit.edu	37	chr4	88973291	88973291	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatatagctgctgtcacagTattttttgtctggattaagg	9	6	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88973291	A	A	88973291	3	1	189	1	0	0	0	0	1	0	0	0	12061	1638	57	5	1723	5	PKD2	4	88973291	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	11023672	88973291	102180985	328	150865											
MMRN1	22915	broad.mit.edu	37	chr4	90833201	90833201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgaaatgtcaactaagaGgtacactctaatattaataa	7	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90833201	T	T	90833201	3	4	189	1	0	0	0	0	1	0	0	0	9764	1014	35	2	860	2	MMRN1	4	90833201	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1859910	90833201	100321075	329	150866											
LEF1	51176	broad.mit.edu	37	chr4	109010215	109010215	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggcatctggaaggtcactCaggctgatgagatttggctc	13	9	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109010215	A	A	109010215	1	1	189	0	1	0	0	0	0	0	0	0	8786	841	29	3		3	LEF1	4	109010215	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	18177014	109010215	82144061	330	150867											
ANK2	287	broad.mit.edu	37	chr4	114277762	114277762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcaggaaggtgtcttcctCctcagaaagtgaacctgagt	12	9	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114277762	A	A	114277762	3	1	189	1	0	0	0	0	1	0	0	0	621	855	30	3	8203	3	ANK2	4	114277762	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	5267547	114277762	76876514	331	150868											
SPATA5	166378	broad.mit.edu	37	chr4	123848705	123848705	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcatgtggttatatggttaGagtatttttatttactgcaa	8	3	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123848705	C	C	123848705	1	2	189	0	1	0	0	0	0	0	0	0	15127	957	33	4		4	SPATA5	4	123848705	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	9570943	123848705	67305571	332	150869											
SCLT1	132320	broad.mit.edu	37	chr4	129880846	129880846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcattttctaattcattgCactttgcttgtagctctctg	5	10	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129880846	A	A	129880846	3	1	189	1	0	0	0	0	1	0	0	0	14019	710	25	3	1150	3	SCLT1	4	129880846	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	6032141	129880846	61273430	333	150870											
EDNRA	1909	broad.mit.edu	37	chr4	148427917	148427917	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagaaatgagtgattaAgatggctcctagccagcatg	13	6	0	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148427917	T	T	148427917	1	4	189	0	1	0	0	0	0	0	0	0	4959	87	3	5		5	EDNRA	4	148427917	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	18547071	148427917	42726359	334	150871											
DCLK2	166614	broad.mit.edu	37	chr4	151161094	151161094	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtctgttttgttgctattGctgcttgtgtatacagttgg	12	5	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151161094	T	T	151161094	1	4	189	0	1	0	0	0	0	0	0	0	4325	1334	46	3		3	DCLK2	4	151161094	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2733177	151161094	39993182	335	150872											
TKTL2	84076	broad.mit.edu	37	chr4	164394569	164394569	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagggtgtctctccaagtcGctgtgaagtttcctcaggtt	12	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164394569	A	A	164394569	2	1	189	1	0	0	0	0	0	0	0	1	16059	1078	38	4		4	TKTL2	4	164394569	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	13233475	164394569	26759707	336	150873											
MARCH1	55016	broad.mit.edu	37	chr4	164853966	164853966	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggcaccatggtcctggaaTtgttggataaatatttaaca	9	7	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164853966	C	C	164853966	1	2	189	0	1	0	0	0	0	0	0	0	9390	1508	52	5		5	MARCH1	4	164853966	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	459397	164853966	26300310	337	150874											
ANP32C	23520	broad.mit.edu	37	chr4	165118290	165118290	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcctcctcttcaccttcctCctcctcctcctcgccctcct	2	24	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118290	A	A	165118290	4	1	189	1	0	0	0	0	0	1	0	0	707	864	30	3	133	3	ANP32C	4	165118290	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	264324	165118290	26035986	338	150875											
FBXO8	26269	broad.mit.edu	37	chr4	175160363	175160363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagaaagaaaaaaaggcaCagctttggttaacttttctt	7	6	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175160363	A	A	175160363	1	1	189	0	1	0	0	0	0	0	0	0	5818	493	17	3		3	FBXO8	4	175160363	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	10042073	175160363	15993913	339	150876											
VEGFC	7424	broad.mit.edu	37	chr4	177632919	177632919	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatataagtagctgcctaGtgtacgcaggacgctatgtt	10	8	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177632919	T	T	177632919	1	4	189	0	1	0	0	0	0	0	0	0	17279	1044	36	3		3	VEGFC	4	177632919	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2472556	177632919	13521357	340	150877											
TLR3	7098	broad.mit.edu	37	chr4	187004712	187004712	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagaatctcataacatcCgttgagaagaaggttttcgg	10	7	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187004712	T	T	187004712	2	4	189	1	0	0	0	0	0	0	0	1	16075	639	23	4		4	TLR3	4	187004712	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	9371793	187004712	4149564	341	150878											
PDCD6	10016	broad.mit.edu	37	chr5	289551	289551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctcttcatcctcttctGtacgcgctgccgggtacaac	7	16	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	289551	T	T	289551	1	4	189	0	1	0	0	0	0	0	0	0	11717	1392	48	3		3	PDCD6	5	289551	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08		289551	180625709	342	150879											
PAPD7	11044	broad.mit.edu	37	chr5	6742546	6742546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttggcagcattttgatGcctggctgtggagagtcctg	14	8	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6742546	T	T	6742546	1	4	189	0	1	0	0	0	0	0	0	0	11520	1334	46	3		3	PAPD7	5	6742546	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	6452995	6742546	174172714	343	150880											
TAS2R1	50834	broad.mit.edu	37	chr5	9629469	9629469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaggatagacagcaacgCgctgatgggtgcacccctgc	14	12	0	2	rs145804099		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9629469	A	A	9629469	3	1	189	1	0	0	0	0	1	0	0	0	15684	768	27	3	227	3	TAS2R1	5	9629469	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2886923	9629469	171285791	344	150881											
CTNND2	1501	broad.mit.edu	37	chr5	11346577	11346577	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgctgtatggagactcaAcagagggacaatactgcagc	11	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11346577	T	T	11346577	3	4	189	1	0	0	0	0	1	0	0	0	4054	43	2	5	2198	5	CTNND2	5	11346577	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	1717108	11346577	169568683	345	150882											
DNAH5	1767	broad.mit.edu	37	chr5	13871952	13871952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtgaatatttaccaactGctggtggttcctatggattt	9	6	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13871952	A	A	13871952	1	1	189	0	1	0	0	0	0	0	0	0	4644	1334	46	4		4	DNAH5	5	13871952	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2525375	13871952	167043308	346	150883											
TRIO	7204	broad.mit.edu	37	chr5	14474198	14474198	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccatcagatttacgactgGcacagagagtacgtaaacat	8	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14474198	C	C	14474198	3	2	189	1	0	0	0	0	1	0	0	0	16677	1212	42	4	6233	4	TRIO	5	14474198	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	602246	14474198	166441062	347	150884											
FBXL7	23194	broad.mit.edu	37	chr5	15928579	15928579	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctttgatgtggtgtccctCtgccctaatctggagcacct	10	12	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15928579	A	A	15928579	2	1	189	1	0	0	0	0	0	0	0	1	5781	900	32	3		3	FBXL7	5	15928579	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	1454381	15928579	164986681	348	150885											
BASP1	10409	broad.mit.edu	37	chr5	17276110	17276110	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatctcctctctctctctcCtctcctatctctcctctctc	0	21	7	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17276110	T	T	17276110	1	4	189	0	1	0	0	0	0	0	0	0	1322	696	24	4		4	BASP1	5	17276110	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	1347531	17276110	163639150	349	150886											
CDH12	1010	broad.mit.edu	37	chr5	21883958	21883958	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgaatgaaaagaaagacaGagttacagatgcccttaatg	10	5	0	6			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21883958	T	T	21883958	1	4	189	0	1	0	0	0	0	0	0	0	3128	957	33	3		3	CDH12	5	21883958	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4607848	21883958	159031302	350	150887											
PRDM9	56979	broad.mit.edu	37	chr5	23522333	23522333	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtagatgccaatttgatgGtagatttcacattttcttat	8	5	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23522333	A	A	23522333	1	1	189	0	1	0	0	0	0	0	0	0	12569	1276	44	4		4	PRDM9	5	23522333	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1638375	23522333	157392927	351	150888											
CDH10	1008	broad.mit.edu	37	chr5	24487843	24487843	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccgagggccccattctcGgaggtaatcgtagttttggt	12	9	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24487843	T	T	24487843	2	4	189	1	0	0	0	0	0	0	0	1	3126	1124	39	1		1	CDH10	5	24487843	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	965510	24487843	156427417	352	150889											
CDH10	1008	broad.mit.edu	37	chr5	24509706	24509706	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatagaatctgggtcccTtgccattacagtaccaatga	9	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24509706	C	C	24509706	3	2	189	1	0	0	0	0	1	0	0	0	3126	1608	56	5	1165	5	CDH10	5	24509706	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	21863	24509706	156405554	353	150890											
CDH6	1004	broad.mit.edu	37	chr5	31299470	31299470	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgacatctgcatagcattTtgcatattgtgggtgacagt	10	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31299470	C	C	31299470	1	2	189	0	1	0	0	0	0	0	0	0	3144	1856	64	5		5	CDH6	5	31299470	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	6789764	31299470	149615790	354	150891											
ZFR	51663	broad.mit.edu	37	chr5	32385791	32385791	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataagaaacaaattggatcTgttgtattaacaaacaaaag	7	4	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32385791	C	C	32385791	1	2	189	0	1	0	0	0	0	0	0	0	17785	1595	55	5		5	ZFR	5	32385791	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1086321	32385791	148529469	355	150892											
SPEF2	79925	broad.mit.edu	37	chr5	35697768	35697768	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaattagccatcttctGtcatttcttgtttattttcc	3	8	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35697768	C	C	35697768	1	2	189	0	1	0	0	0	0	0	0	0	15153	1392	48	4		4	SPEF2	5	35697768	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3311977	35697768	145217492	356	150893											
C5orf42	65250	broad.mit.edu	37	chr5	37187517	37187517	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacctacaagcacattaccTttctgattggtggcagttct	7	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37187517	A	A	37187517	3	1	189	1	0	0	0	0	1	0	0	0	2324	1623	56	5	5634	5	C5orf42	5	37187517	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	1489749	37187517	143727743	357	150894											
RICTOR	253260	broad.mit.edu	37	chr5	38960461	38960461	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagggaagcaaattcaaTaaaaaacatttgctctggaa	9	5	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38960461	C	C	38960461	1	2	189	0	1	0	0	0	0	0	0	0	13467	1421	49	5		5	RICTOR	5	38960461	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1772944	38960461	141954799	358	150895											
FYB	2533	broad.mit.edu	37	chr5	39202797	39202797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgttccgaatctttggCctgctccagtgggctttaga	12	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39202797	A	A	39202797	3	1	189	1	0	0	0	0	1	0	0	0	6184	739	26	3	2295	3	FYB	5	39202797	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	242336	39202797	141712463	359	150896											
NNT	23530	broad.mit.edu	37	chr5	43656852	43656852	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggataatcccattcatggtGgacccaagctttactactgg	10	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43656852	T	T	43656852	2	4	189	1	0	0	0	0	0	0	0	1	10605	1335	47	2		2	NNT	5	43656852	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	4454055	43656852	137258408	360	150897											
ITGA1	3672	broad.mit.edu	37	chr5	52214578	52214578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggtcccgagatgtggccGtagttaaagtgaccatgaat	13	7	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52214578	T	T	52214578	3	4	189	1	0	0	0	0	1	0	0	0	7942	1145	40	3	2067	3	ITGA1	5	52214578	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	8557726	52214578	128700682	361	150898											
ITGA2	3673	broad.mit.edu	37	chr5	52344449	52344449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttacctgtggaaatctgCttctttcctcttttcctgtg	7	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52344449	A	A	52344449	1	1	189	0	1	0	0	0	0	0	0	0	7945	812	28	3		3	ITGA2	5	52344449	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	129871	52344449	128570811	362	150899											
ITGA2	3673	broad.mit.edu	37	chr5	52361934	52361934	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatagggaatcgatgtatcAtagtttgcacaaaggaataa	9	5	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52361934	G	G	52361934	1	3	189	0	1	0	0	0	0	0	0	0	7945	232	8	5		5	ITGA2	5	52361934	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	17485	52361934	128553326	363	150900											
HEXB	3074	broad.mit.edu	37	chr5	74014056	74014056	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtagaaaatgtacatGttttaaatatattgttaagc	7	4	0	1	rs34187493		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74014056	T	T	74014056	1	4	189	0	1	0	0	0	0	0	0	0	7141	1392	48	3		3	HEXB	5	74014056	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	21652122	74014056	106901204	364	150901											
IQGAP2	10788	broad.mit.edu	37	chr5	75858098	75858098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccttcccaccagtgacacCgaaagatgtttcagatcctt	6	14	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75858098	A	A	75858098	1	1	189	0	1	0	0	0	0	0	0	0	7885	667	23	1		1	IQGAP2	5	75858098	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1844042	75858098	105057162	365	150902											
IQGAP2	10788	broad.mit.edu	37	chr5	75902092	75902092	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaaattcagaattgtattGatatggttaatgctcaaatt	7	3	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75902092	T	T	75902092	3	4	189	1	0	0	0	0	1	0	0	0	7885	1290	45	3	1367	3	IQGAP2	5	75902092	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	43994	75902092	105013168	366	150903											
F2RL2	2151	broad.mit.edu	37	chr5	75913420	75913420	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttcactattttgtaaggTaagcagtggagtgatttctg	10	5	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75913420	A	A	75913420	3	1	189	1	0	0	0	0	1	0	0	0	5388	1638	57	5	16	5	F2RL2	5	75913420	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	11328	75913420	105001840	367	150904											
RFESD	317671	broad.mit.edu	37	chr5	94990059	94990059	+	Frame_Shift_Del	DEL	G	-	-													tcaggaggacctttacatttGggagatatagaggtatgtaa							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94990059	-	-	94990059	7	5	189	1	0	1	0	1	0	0	0	0	13357	1339	47	0	371	0	RFESD	5	94990059	Frame_Shift_Del	DEL	G	TCGA-64-5778-01A-01D-1625-08	19076639	94990059	85925201	368	150905											
LIX1	167410	broad.mit.edu	37	chr5	96460280	96460280	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttcacttgggaatgcagCcttctgctgctgcttgcttt	9	12	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96460280	T	T	96460280	3	4	189	1	0	0	0	0	1	0	0	0	8905	739	26	4	732	4	LIX1	5	96460280	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1470221	96460280	84454980	369	150906											
PAM	5066	broad.mit.edu	37	chr5	102285239	102285239	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgttttcatttcccacAgtggtgaattctgacatttc	7	9	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102285239	G	G	102285239	5	3	189	1	0	0	0	0	0	0	1	0	11506	202	7	5	676	5	PAM	5	102285239	Splice_Site	SNP	A	TCGA-64-5778-01A-01D-1625-08	5824959	102285239	78630021	370	150907											
TMED7-TICAM2	100302736	broad.mit.edu	37	chr5	114956441	114956441	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattaatcagatttaatcaGatttcctattaaaatggcaa	4	5	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114956441	T	T	114956441	1	4	189	0	1	0	0	0	0	0	0	0	16133	957	33	3		3	TMED7-TICAM2	5	114956441	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	12671202	114956441	65958819	371	150908											
AQPEP	206338	broad.mit.edu	37	chr5	115346636	115346637	+	Intron	DEL	TC	-	-													tttttaaataaatcctctctTcttcttttcatattttagcc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115346637	-	-	115346636	6	5	189	0	1	1	0	1	0	0	0	0	836	1798	62	0		0	AQPEP	5	115346636	Intron	DEL	TC	TCGA-64-5778-01A-01D-1625-08	390195	115346636	65568624	372	150909											
MEGF10	84466	broad.mit.edu	37	chr5	126770991	126770991	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagttatttcctgtgctaaGattctagggttctgcgagag	11	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126770991	T	T	126770991	1	4	189	0	1	0	0	0	0	0	0	0	9553	957	33	3		3	MEGF10	5	126770991	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	11424355	126770991	54144269	373	150910											
FBN2	2201	broad.mit.edu	37	chr5	127641291	127641291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgcagtctgcattccgCtggcagagattatcaccatt	9	10	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127641291	A	A	127641291	3	1	189	1	0	0	0	0	1	0	0	0	5760	796	28	3	3240	3	FBN2	5	127641291	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	870300	127641291	53273969	374	150911											
H2AFY	9555	broad.mit.edu	37	chr5	134696097	134696097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgaggctgggagtggcccCcgggatccccccagccttcc	13	18	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134696097	A	A	134696097	1	1	189	0	1	0	0	0	0	0	0	0	6994	638	22	2		2	H2AFY	5	134696097	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	7054806	134696097	46219163	375	150912											
TGFBI	7045	broad.mit.edu	37	chr5	135390481	135390481	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaccagctggcctctaaGtatctgtaccatggacagac	9	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135390481	A	A	135390481	2	1	189	1	0	0	0	0	0	0	0	1	15943	1020	36	4		4	TGFBI	5	135390481	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	694384	135390481	45524779	376	150913											
WNT8A	7478	broad.mit.edu	37	chr5	137426515	137426515	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcctgggcatctatggcaCagagggtcgtgagtgcctac	14	11	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137426515	T	T	137426515	3	4	189	1	0	0	0	0	1	0	0	0	17523	478	17	4	831	4	WNT8A	5	137426515	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2036034	137426515	43488745	377	150914											
PSD2	84249	broad.mit.edu	37	chr5	139192788	139192788	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gataagtgaataggatggggGagtggtgtgcccccaggggg	20	5	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139192788	T	T	139192788	1	4	189	0	1	0	0	0	0	0	0	0	12753	1189	41	3		3	PSD2	5	139192788	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1766273	139192788	41722472	378	150915											
PCDHA5	56143	broad.mit.edu	37	chr5	140202495	140202495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgtctgaccgtgactcaGgtgccaacgggcaggtgacc	15	12	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140202495	A	A	140202495	3	1	189	1	0	0	0	0	1	0	0	0	11621	1000	35	4	1137	4	PCDHA5	5	140202495	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1009707	140202495	40712765	379	150916											
PCDHB4	56131	broad.mit.edu	37	chr5	140503638	140503638	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggccgactctctcacCgtctacctggtggtggcgtt	12	15	3	0	rs112059899		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140503638	T	T	140503638	2	4	189	1	0	0	0	0	0	0	0	1	11638	639	23	4		4	PCDHB4	5	140503638	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	301143	140503638	40411622	380	150917											
PCDHB4	56131	broad.mit.edu	37	chr5	140503767	140503767	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgctcggtgcccgagggCccctttccagggcatctggt	14	15	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140503767	T	T	140503767	2	4	189	1	0	0	0	0	0	0	0	1	11638	726	26	4		4	PCDHB4	5	140503767	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	129	140503767	40411493	381	150918											
PCDHB12	56124	broad.mit.edu	37	chr5	140590432	140590432	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggacaatggcgagcctccGcgctcggccaccgccacgct	12	17	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140590432	T	T	140590432	2	4	189	1	0	0	0	0	0	0	0	1	11631	1074	38	3		3	PCDHB12	5	140590432	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	86665	140590432	40324828	382	150919											
PCDHB13	56123	broad.mit.edu	37	chr5	140595689	140595689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgtgctcctggtggacgGcttctcccagccctacctgc	11	17	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140595689	T	T	140595689	3	4	189	1	0	0	0	0	1	0	0	0	11632	1203	42	3	1996	3	PCDHB13	5	140595689	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5257	140595689	40319571	383	150920											
PCDHB14	56122	broad.mit.edu	37	chr5	140605138	140605138	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggccgactccctcacCgtctacctggtggtggcatt	11	16	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140605138	T	T	140605138	2	4	189	1	0	0	0	0	0	0	0	1	11633	639	23	4		4	PCDHB14	5	140605138	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	9449	140605138	40310122	384	150921											
PCDHB14	56122	broad.mit.edu	37	chr5	140605156	140605156	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgtctacctggtggtggcAttggcctcggtgtcgtcgct	14	12	1	0	rs3896534	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140605156	G	G	140605156	2	3	189	1	0	0	0	0	0	0	0	1	11633	204	8	5		5	PCDHB14	5	140605156	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	18	140605156	40310104	385	150922											
PCDHGA3	56112	broad.mit.edu	37	chr5	140723759	140723759	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatcgctaacgacctgggGctagagccccgggagctggc	14	13	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140723759	A	A	140723759	2	1	189	1	0	0	0	0	0	0	0	1	11649	1190	42	4		4	PCDHGA3	5	140723759	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	118603	140723759	40191501	386	150923											
PCDHGA12	26025	broad.mit.edu	37	chr5	140811375	140811375	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccccagaagtggtcctcaCctctctcgccagctcggttc	9	17	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140811375	T	T	140811375	3	4	189	1	0	0	0	0	1	0	0	0	11647	507	18	4	1051	4	PCDHGA12	5	140811375	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	87616	140811375	40103885	387	150924											
PCDHGC5	56097	broad.mit.edu	37	chr5	140890662	140890662	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgccacactgaccaacgcAgctggcaagcgggatggcaa	12	12	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140890662	G	G	140890662	2	3	189	1	0	0	0	0	0	0	0	1	11665	175	7	5		5	PCDHGC5	5	140890662	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	79287	140890662	40024598	388	150925											
PDGFRB	5159	broad.mit.edu	37	chr5	149513410	149513410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatatccacccgttcctggCccctcctccgacccctgcct	6	21	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149513410	A	A	149513410	1	1	189	0	1	0	0	0	0	0	0	0	11756	754	26	3		3	PDGFRB	5	149513410	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	8622748	149513410	31401850	389	150926											
SLC36A1	206358	broad.mit.edu	37	chr5	150846759	150846759	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccttccttccccacctccaGacgtgttgtggacttcttcc	6	17	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150846759	C	C	150846759	5	2	189	1	0	0	0	0	0	0	1	0	14707	956	33	4	437	4	SLC36A1	5	150846759	Splice_Site	SNP	G	TCGA-64-5778-01A-01D-1625-08	1333349	150846759	30068501	390	150927											
FAT2	2196	broad.mit.edu	37	chr5	150887062	150887062	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcttatgataatgaacGccacggccactgtgatgatc	10	10	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150887062	A	A	150887062	3	1	189	1	0	0	0	0	1	0	0	0	5747	1087	38	4	887	4	FAT2	5	150887062	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	40303	150887062	30028198	391	150928											
TIMD4	91937	broad.mit.edu	37	chr5	156347577	156347577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagaacatgcaaaatgctGggggaattccagtgctgccc	11	10	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156347577	T	T	156347577	1	4	189	0	1	0	0	0	0	0	0	0	16026	1363	47	2		2	TIMD4	5	156347577	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	5460515	156347577	24567683	392	150929											
ITK	3702	broad.mit.edu	37	chr5	156676048	156676048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgcttccccatgcattGtcgtatacaatttgaggacc	9	10	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156676048	T	T	156676048	1	4	189	0	1	0	0	0	0	0	0	0	7979	1392	48	3		3	ITK	5	156676048	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	328471	156676048	24239212	393	150930											
ITK	3702	broad.mit.edu	37	chr5	156679582	156679582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctatgacgcataagtaCaaggaacttacagagttctt	7	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156679582	A	A	156679582	1	1	189	0	1	0	0	0	0	0	0	0	7979	493	17	3		3	ITK	5	156679582	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3534	156679582	24235678	394	150931											
THG1L	54974	broad.mit.edu	37	chr5	157164844	157164844	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgaatggatagtagcactaGgggagaaagaagacatgcag	14	5	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157164844	A	A	157164844	1	1	189	0	1	0	0	0	0	0	0	0	15984	1015	35	4		4	THG1L	5	157164844	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	485262	157164844	23750416	395	150932											
EBF1	1879	broad.mit.edu	37	chr5	158139237	158139237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggacattgcggcagagcCgtatccgttcatgctcgtgg	13	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158139237	A	A	158139237	3	1	189	1	0	0	0	0	1	0	0	0	4920	652	23	1	313	1	EBF1	5	158139237	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	974393	158139237	22776023	396	150933											
EBF1	1879	broad.mit.edu	37	chr5	158524201	158524201	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacccgcgccccttgtcaccCtgtacacacactcgaaccct	6	20	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158524201	G	G	158524201	1	3	189	0	1	0	0	0	0	0	0	0	4920	696	24	4		4	EBF1	5	158524201	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	384964	158524201	22391059	397	150934											
GABRA6	2559	broad.mit.edu	37	chr5	161116422	161116422	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttagttgatactggaaatCaaggaagaaatagaatcatg	9	3	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161116422	G	G	161116422	1	3	189	0	1	0	0	0	0	0	0	0	6225	841	29	4		4	GABRA6	5	161116422	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2592221	161116422	19798838	398	150935											
MAT2B	27430	broad.mit.edu	37	chr5	162944524	162944524	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaacctattctactcagctCaaaaagttgaaactattgaa	4	9	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162944524	T	T	162944524	1	4	189	0	1	0	0	0	0	0	0	0	9423	841	29	4		4	MAT2B	5	162944524	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1828102	162944524	17970736	399	150936											
SLIT3	6586	broad.mit.edu	37	chr5	168310186	168310186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaggcacctggaccaccCtcttgtcccatccctcaccc	6	20	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168310186	T	T	168310186	1	4	189	0	1	0	0	0	0	0	0	0	14855	696	24	4		4	SLIT3	5	168310186	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	5365662	168310186	12605074	400	150937											
GABRP	2568	broad.mit.edu	37	chr5	170224482	170224482	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcttagaatcacgacaacTgttgcatgtaacatggatct	7	10	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170224482	A	A	170224482	2	1	189	1	0	0	0	0	0	0	0	1	6234	1567	55	5		5	GABRP	5	170224482	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	1914296	170224482	10690778	401	150938											
FAM153B	202134	broad.mit.edu	37	chr5	175528535	175528535	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggtctgaacctcataGtgttttgtttttctctagat	8	8	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175528535	T	T	175528535	1	4	189	0	1	0	0	0	0	0	0	0	5507	1044	36	3		3	FAM153B	5	175528535	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	5304053	175528535	5386725	402	150939											
CDHR2	54825	broad.mit.edu	37	chr5	176002154	176002154	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggctccatagtcctcaatGgcagcctcagctacaacaac	7	14	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176002154	C	C	176002154	3	2	189	1	0	0	0	0	1	0	0	0	3149	1348	47	4	591	4	CDHR2	5	176002154	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	473619	176002154	4913106	403	150940											
GFPT2	9945	broad.mit.edu	37	chr5	179744139	179744139	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcgatagtaactcctGtaaagcttactgcagattcc	8	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179744139	C	C	179744139	1	2	189	0	1	0	0	0	0	0	0	0	6410	1392	48	4		4	GFPT2	5	179744139	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3741985	179744139	1171121	404	150941											
GFPT2	9945	broad.mit.edu	37	chr5	179762989	179762989	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcagtttgccgcacttgaaCaacaagcctcgacccaggac	8	14	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179762989	T	T	179762989	1	4	189	0	1	0	0	0	0	0	0	0	6410	493	17	4		4	GFPT2	5	179762989	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	18850	179762989	1152271	405	150942											
TUBB2B	347733	broad.mit.edu	37	chr6	3225005	3225005	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctacgcctcgtcctcgccctCctcctcctcgaactcccctt	4	23	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3225005	T	T	3225005	3	4	189	1	0	0	0	0	1	0	0	0	16881	864	30	4	23	4	TUBB2B	6	3225005	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08		3225005	167890062	406	150943											
BMP6	654	broad.mit.edu	37	chr6	7845350	7845350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagtaacaatagttgtcaCtctctcttgtttaatcttat	4	8	5	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7845350	A	A	7845350	1	1	189	0	1	0	0	0	0	0	0	0	1470	580	20	3		3	BMP6	6	7845350	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4620345	7845350	163269717	407	150944											
RANBP9	10048	broad.mit.edu	37	chr6	13644892	13644892	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttctatatcaaacacgaaagGatgttgcccaaaattggcat	7	8	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13644892	C	C	13644892	3	2	189	1	0	0	0	0	1	0	0	0	13140	1174	41	4	1228	4	RANBP9	6	13644892	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5799542	13644892	157470175	408	150945											
HIST1H2AC	8334	broad.mit.edu	37	chr6	26124812	26124812	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatccaggccgtgcttctgCctaagaagaccgagagtcac	10	13	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26124812	G	G	26124812	3	3	189	1	0	0	0	0	1	0	0	0	7197	739	26	4	354	4	HIST1H2AC	6	26124812	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	12479920	26124812	144990255	409	150946											
HIST1H3D	8351	broad.mit.edu	37	chr6	26197028	26197028	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggtggttggctctgaaaaGagcctttgggttttggttag	15	4	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26197028	A	A	26197028	1	1	189	0	1	0	0	0	0	0	0	0	7225	957	33	4		4	HIST1H3D	6	26197028	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	72216	26197028	144918039	410	150947											
HIST1H3H	8357	broad.mit.edu	37	chr6	27778257	27778257	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgtatccgcggcgagaggGcttgagtctcaaggactcac	14	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27778257	T	T	27778257	3	4	189	1	0	0	0	0	1	0	0	0	7229	1203	42	3	408	3	HIST1H3H	6	27778257	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1581229	27778257	143336810	411	150948											
SKIV2L	6499	broad.mit.edu	37	chr6	31927176	31927176	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggagctccagagagtaGcgtgagtgacttttgaccct	13	10	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31927176	A	A	31927176	3	1	189	1	0	0	0	0	1	0	0	0	14472	985	34	4	131	4	SKIV2L	6	31927176	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4148919	31927176	139187891	412	150949											
RNF5	6048	broad.mit.edu	37	chr6	32146358	32146358	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcggggcggggcgggcgcgAccttcgaatgtaatatatgt	17	8	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32146358	G	G	32146358	3	3	189	1	0	0	0	0	1	0	0	0	13608	275	10	5	72	5	RNF5	6	32146358	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	219182	32146358	138968709	413	150950											
NOTCH4	4855	broad.mit.edu	37	chr6	32182044	32182044	+	Intron	DEL	G	-	-													catgaggatctggttgtaaaGagaaaggggagggtttttct							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32182044	-	-	32182044	6	5	189	0	1	1	0	1	0	0	0	0	10646	957	33	0		0	NOTCH4	6	32182044	Intron	DEL	G	TCGA-64-5778-01A-01D-1625-08	35686	32182044	138933023	414	150951											
C6orf10	10665	broad.mit.edu	37	chr6	32322972	32322972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcatgagagtttggatccCtaatctttacatatcagctt	6	8	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32322972	A	A	32322972	1	1	189	0	1	0	0	0	0	0	0	0	2340	696	24	2		2	C6orf10	6	32322972	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	140928	32322972	138792095	415	150952											
HLA-DRB5	3127	broad.mit.edu	37	chr6	32557549	32557549	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggacaggaccaggggccaGagaagcaggcaagtctcact	14	11	1	1	rs17204744		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32557549	A	A	32557549	1	1	189	0	1	0	0	0	0	0	0	0	7276	957	33	4		4	HLA-DRB5	6	32557549	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	234577	32557549	138557518	416	150953											
BRD2	6046	broad.mit.edu	37	chr6	32943245	32943245	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attattattgggctgcttcaGagtgtatgcaagattttaat	9	4	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32943245	A	A	32943245	3	1	189	1	0	0	0	0	1	0	0	0	1511	943	33	4	428	4	BRD2	6	32943245	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	385696	32943245	138171822	417	150954											
TCP11	6954	broad.mit.edu	37	chr6	35088692	35088692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattatatacatactaggctGcttattgaggagttcctgga	9	7	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35088692	T	T	35088692	3	4	189	1	0	0	0	0	1	0	0	0	15835	1328	46	3	822	3	TCP11	6	35088692	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2145447	35088692	136026375	418	150955											
LHFPL5	222662	broad.mit.edu	37	chr6	35787259	35787259	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtgagtaattctatgggaGggtggtctgcgtgcccttag	16	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35787259	C	C	35787259	1	2	189	0	1	0	0	0	0	0	0	0	8840	1015	35	4		4	LHFPL5	6	35787259	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	698567	35787259	135327808	419	150956											
STK38	11329	broad.mit.edu	37	chr6	36485593	36485593	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctgcctccactagaatgtCacgctccgcacgaatgtggc	10	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36485593	A	A	36485593	3	1	189	1	0	0	0	0	1	0	0	0	15421	826	29	3	1018	3	STK38	6	36485593	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	698334	36485593	134629474	420	150957											
FGD2	221472	broad.mit.edu	37	chr6	36979442	36979442	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctgatgtgtgggtggctCcctgtcactgcagtgagtga	17	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36979442	T	T	36979442	1	4	189	0	1	0	0	0	0	0	0	0	5890	870	30	4		4	FGD2	6	36979442	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	493849	36979442	134135625	421	150958											
DNAH8	1769	broad.mit.edu	37	chr6	38885649	38885649	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagaagtacatattaactcAggaagaaagtattttcttcc	6	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38885649	T	T	38885649	1	4	189	0	1	0	0	0	0	0	0	0	4647	203	7	5		5	DNAH8	6	38885649	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	1906207	38885649	132229418	422	150959											
PTCRA	171558	broad.mit.edu	37	chr6	42891135	42891135	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccctgtccccttccacaCaccaggatatggttggaggg	11	14	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42891135	A	A	42891135	1	1	189	0	1	0	0	0	0	0	0	0	12841	493	17	3		3	PTCRA	6	42891135	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4005486	42891135	128223932	423	150960											
C6orf154	221424	broad.mit.edu	37	chr6	43476063	43476063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtaatccagattgaggaCgcggacctgggagctgtggg	17	7	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43476063	A	A	43476063	3	1	189	1	0	0	0	0	1	0	0	0	2362	536	19	3	437	3	C6orf154	6	43476063	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	584928	43476063	127639004	424	150961											
TMEM63B	55362	broad.mit.edu	37	chr6	44103977	44103977	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcagcctctgcgcttcCtgtgccttctgtgccttctg	9	15	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44103977	T	T	44103977	1	4	189	0	1	0	0	0	0	0	0	0	16314	696	24	4		4	TMEM63B	6	44103977	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	627914	44103977	127011090	425	150962											
RHAG	6005	broad.mit.edu	37	chr6	49578778	49578778	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccacaatgcctgcaagGcctcccactacaccaggtaa	7	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49578778	T	T	49578778	2	4	189	1	0	0	0	0	0	0	0	1	13424	1190	42	3		3	RHAG	6	49578778	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	5474801	49578778	121536289	426	150963											
RHAG	6005	broad.mit.edu	37	chr6	49583332	49583332	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagcaagtttatccacaCtcaccaatcattgcaaacaa	3	12	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49583332	G	G	49583332	1	3	189	0	1	0	0	0	0	0	0	0	13424	580	20	4		4	RHAG	6	49583332	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4554	49583332	121531735	427	150964											
PGK2	5232	broad.mit.edu	37	chr6	49754274	49754274	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctccaccaagtatagcCagaaagggtctcactgggtt	11	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49754274	A	A	49754274	2	1	189	1	0	0	0	0	0	0	0	1	11886	581	21	2		2	PGK2	6	49754274	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	170942	49754274	121360793	428	150965											
DEFB110	245913	broad.mit.edu	37	chr6	49986685	49986685	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtgactcttttcttctgtCatcgttactgctgcaagcag	8	10	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49986685	T	T	49986685	1	4	189	0	1	0	0	0	0	0	0	0	4439	841	29	4		4	DEFB110	6	49986685	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	232411	49986685	121128382	429	150966											
GSTA2	2939	broad.mit.edu	37	chr6	52617725	52617725	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttggcatcttgttcctcaGgttgactaaagggcagaaga	12	8	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52617725	A	A	52617725	3	1	189	1	0	0	0	0	1	0	0	0	6897	1000	35	4	339	4	GSTA2	6	52617725	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2631040	52617725	118497342	430	150967											
ICK	22858	broad.mit.edu	37	chr6	52878367	52878367	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatctaccataactggaccCtgtatactgaaaaagaaaat	5	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52878367	T	T	52878367	1	4	189	0	1	0	0	0	0	0	0	0	7554	696	24	4		4	ICK	6	52878367	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	260642	52878367	118236700	431	150968											
LRRC1	55227	broad.mit.edu	37	chr6	53706983	53706983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggctccctccagaaataGcaaacttcatgcagctggtg	10	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53706983	T	T	53706983	3	4	189	1	0	0	0	0	1	0	0	0	9053	971	34	3	241	3	LRRC1	6	53706983	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	828616	53706983	117408084	432	150969											
TINAG	27283	broad.mit.edu	37	chr6	54219275	54219275	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaaagatgatattttaAtactgtgccatttgttctgt	6	4	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54219275	G	G	54219275	1	3	189	0	1	0	0	0	0	0	0	0	16044	116	4	5		5	TINAG	6	54219275	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	512292	54219275	116895792	433	150970											
GFRAL	389400	broad.mit.edu	37	chr6	55196408	55196408	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatcaattatttcactaCatgttattttccataattct	1	10	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55196408	A	A	55196408	1	1	189	0	1	0	0	0	0	0	0	0	6415	493	17	3		3	GFRAL	6	55196408	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	977133	55196408	115918659	434	150971											
COL21A1	81578	broad.mit.edu	37	chr6	56021688	56021688	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctttcagtactcacaggCttaccatcttgaccaggttg	8	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56021688	T	T	56021688	2	4	189	1	0	0	0	0	0	0	0	1	3712	796	28	4		4	COL21A1	6	56021688	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	825280	56021688	115093379	435	150972											
DST	667	broad.mit.edu	37	chr6	56504204	56504205	+	Intron	DNP	CC	AA	AA													gtgttagaaaaatatataaaCctaaaatgcaaccctagtat							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	56504205	AA	AA	56504204	1	1	189	0	1	0	0	0	0	0	0	0	4823	522	18	3		3	DST	6	56504204	Intron	DNP	CC	TCGA-64-5778-01A-01D-1625-08	482516	56504204	114610863	436	150973											
COL19A1	1310	broad.mit.edu	37	chr6	70878090	70878091	+	Missense_Mutation	DNP	GG	TT	TT													tgaatgttcccagttacccaGggccacccggtcctcctgta							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	70878091	TT	TT	70878090	3	4	189	1	0	0	0	0	1	0	0	0	3708	1000	35	2	2674	2	COL19A1	6	70878090	Missense_Mutation	DNP	GG	TCGA-64-5778-01A-01D-1625-08	14373886	70878090	100236977	437	150974											
COL19A1	1310	broad.mit.edu	37	chr6	70890522	70890522	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgaataagcagtttccaaGgagtaagaagaatgcacaga	10	5	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70890522	C	C	70890522	1	2	189	0	1	0	0	0	0	0	0	0	3708	1015	35	4		4	COL19A1	6	70890522	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	12432	70890522	100224545	438	150975											
SMAP1	60682	broad.mit.edu	37	chr6	71562165	71562165	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttttttaaccatatAtcaatttttaaaataatgcc	1	6	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71562165	G	G	71562165	1	3	189	0	1	0	0	0	0	0	0	0	14880	464	16	5		5	SMAP1	6	71562165	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	671643	71562165	99552902	439	150976											
B3GAT2	135152	broad.mit.edu	37	chr6	71603759	71603759	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttttaaagcttccttcatCtagtgcatcgttataaacaa	4	9	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71603759	A	A	71603759	1	1	189	0	1	0	0	0	0	0	0	0	1259	928	32	3		3	B3GAT2	6	71603759	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	41594	71603759	99511308	440	150977											
KCNQ5	56479	broad.mit.edu	37	chr6	73905174	73905174	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcatagcagttctttaGccatacatatcattgcatga	7	10	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73905174	T	T	73905174	1	4	189	0	1	0	0	0	0	0	0	0	8156	986	34	3		3	KCNQ5	6	73905174	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	2301415	73905174	97209893	441	150978											
TTK	7272	broad.mit.edu	37	chr6	80749948	80749948	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacccaaaacagaggatatcCattcctgagctcctggctca	8	13	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80749948	G	G	80749948	2	3	189	1	0	0	0	0	0	0	0	1	16846	581	21	4		4	TTK	6	80749948	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	6844774	80749948	90365119	442	150979											
RIPPLY2	134701	broad.mit.edu	37	chr6	84567041	84567041	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaattttccaattcaagCcacaatttcattttatgaag	4	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84567041	A	A	84567041	3	1	189	1	0	0	0	0	1	0	0	0	13496	739	26	3	334	3	RIPPLY2	6	84567041	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3817093	84567041	86548026	443	150980											
RIPPLY2	134701	broad.mit.edu	37	chr6	84567143	84567143	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgattatatccaaagcttGtggggtttaaatttagtgta	9	3	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84567143	T	T	84567143	1	4	189	0	1	0	0	0	0	0	0	0	13496	1392	48	3		3	RIPPLY2	6	84567143	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	102	84567143	86547924	444	150981											
SPACA1	81833	broad.mit.edu	37	chr6	88773885	88773885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgtgctgaccataggaGtcattatctgtgtatttata	8	5	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88773885	T	T	88773885	3	4	189	1	0	0	0	0	1	0	0	0	15086	1029	36	3	701	3	SPACA1	6	88773885	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4206742	88773885	82341182	445	150982											
GABRR1	2569	broad.mit.edu	37	chr6	89891536	89891536	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgccaaaagggatacagaatCaatttgaaaagaatggtttt	9	5	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89891536	T	T	89891536	1	4	189	0	1	0	0	0	0	0	0	0	6236	841	29	4		4	GABRR1	6	89891536	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1117651	89891536	81223531	446	150983											
MDN1	23195	broad.mit.edu	37	chr6	90403780	90403780	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccaaaacaaataatcacTctgctgtgttacctgacgtg	6	12	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90403780	C	C	90403780	1	2	189	0	1	0	0	0	0	0	0	0	9508	1566	54	5		5	MDN1	6	90403780	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	512244	90403780	80711287	447	150984											
C6orf167	253714	broad.mit.edu	37	chr6	97609801	97609801	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacatatattttgtaactatCcattaaattgaggggaaaca	6	6	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97609801	G	G	97609801	1	3	189	0	1	0	0	0	0	0	0	0	2365	870	30	4		4	C6orf167	6	97609801	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	7206021	97609801	73505266	448	150985											
PDSS2	57107	broad.mit.edu	37	chr6	107566697	107566697	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgacattttcgttattcTagttgtaccacgacggttta	8	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107566697	C	C	107566697	1	2	189	0	1	0	0	0	0	0	0	0	11788	1537	53	5		5	PDSS2	6	107566697	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	9956896	107566697	63548370	449	150986											
WASF1	8936	broad.mit.edu	37	chr6	110428292	110428292	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaataccttctgcttcctCttttccttcctcttatcctc	2	15	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110428292	A	A	110428292	3	1	189	1	0	0	0	0	1	0	0	0	17379	912	32	3	1171	3	WASF1	6	110428292	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2861595	110428292	60686775	450	150987											
CDC40	51362	broad.mit.edu	37	chr6	110551182	110551182	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttcaggagatggaaatGgaaaattaaacatttgggac	11	3	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110551182	T	T	110551182	4	4	189	1	0	0	0	0	0	1	0	0	3100	1349	47	2	1646	2	CDC40	6	110551182	Nonsense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	122890	110551182	60563885	451	150988											
LAMA4	3910	broad.mit.edu	37	chr6	112462797	112462797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagaaatccaaatatttGggtatatacaagtgacttct	6	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112462797	T	T	112462797	1	4	189	0	1	0	0	0	0	0	0	0	8680	1363	47	2		2	LAMA4	6	112462797	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1911615	112462797	58652270	452	150989											
LAMA4	3910	broad.mit.edu	37	chr6	112537579	112537579	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cccaacttaccacacagtatCctgagccgtccaaacactcg	5	17	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112537579	G	G	112537579	3	3	189	1	0	0	0	0	1	0	0	0	8680	855	30	4	5332	4	LAMA4	6	112537579	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	74782	112537579	58577488	453	150990											
HS3ST5	222537	broad.mit.edu	37	chr6	114405344	114405344	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacagcttaagaccattaAgtggttgctcctatccattc	7	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114405344	T	T	114405344	1	4	189	0	1	0	0	0	0	0	0	0	7435	87	3	5		5	HS3ST5	6	114405344	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	1867765	114405344	56709723	454	150991											
C6orf170	221322	broad.mit.edu	37	chr6	121642831	121642831	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacaactgtatcatagcCgcattcttcaccctgattcc	5	14	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121642831	A	A	121642831	3	1	189	1	0	0	0	0	1	0	0	0	2367	652	23	1	3632	1	C6orf170	6	121642831	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	7237487	121642831	49472236	455	150992											
LAMA2	3908	broad.mit.edu	37	chr6	129465106	129465106	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccttctccagaactgctaGaatttacctccgctcgctat	5	14	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129465106	A	A	129465106	3	1	189	1	0	0	0	0	1	0	0	0	8678	943	33	4	718	4	LAMA2	6	129465106	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	7822275	129465106	41649961	456	150993											
LAMA2	3908	broad.mit.edu	37	chr6	129785559	129785559	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaagttcagaacattttctTcgagtgctcttctgatgtat	7	8	5	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129785559	A	A	129785559	3	1	189	1	0	0	0	0	1	0	0	0	8678	1783	62	5	7315	5	LAMA2	6	129785559	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	320453	129785559	41329508	457	150994											
TAAR2	9287	broad.mit.edu	37	chr6	132938666	132938667	+	Missense_Mutation	DNP	CC	AT	AT													aaaaattttgccataaatccCcaccatcatagacccaggag							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	132938667	AT	AT	132938666	3	1	189	1	0	0	0	0	1	0	0	0	15609	623	22	2	380	2	TAAR2	6	132938666	Missense_Mutation	DNP	CC	TCGA-64-5778-01A-01D-1625-08	3153107	132938666	38176401	458	150995											
EYA4	2070	broad.mit.edu	37	chr6	133783668	133783668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggcaggtaatcctgctgGctggtagctttgtattctat	11	7	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133783668	T	T	133783668	1	4	189	0	1	0	0	0	0	0	0	0	5374	1218	42	3		3	EYA4	6	133783668	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	845002	133783668	37331399	459	150996											
BCLAF1	9774	broad.mit.edu	37	chr6	136596819	136596819	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtactagcaagcagcctgTctttagtcaaggaagcaggt	12	8	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136596819	C	C	136596819	3	2	189	1	0	0	0	0	1	0	0	0	1388	1667	58	5	1091	5	BCLAF1	6	136596819	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	2813151	136596819	34518248	460	150997											
IL20RA	53832	broad.mit.edu	37	chr6	137325893	137325893	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagccttgaactctgatgaTtgatctgtaaaaaaaaaaaa	6	5	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137325893	C	C	137325893	2	2	189	1	0	0	0	0	0	0	0	1	7738	1490	52	5		5	IL20RA	6	137325893	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	729074	137325893	33789174	461	150998											
KIAA1244	57221	broad.mit.edu	37	chr6	138530884	138530884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgagccactgccctggccGcatttttctttttaacggca	8	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138530884	T	T	138530884	1	4	189	0	1	0	0	0	0	0	0	0	8287	1102	38	3		3	KIAA1244	6	138530884	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1204991	138530884	32584183	462	150999											
CCDC28A	25901	broad.mit.edu	37	chr6	139101213	139101213	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actcttcttttcaaagtgccAgtttcttttaagaaaaaaag	5	7	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139101213	T	T	139101213	1	4	189	0	1	0	0	0	0	0	0	0	2829	203	7	5		5	CCDC28A	6	139101213	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	570329	139101213	32013854	463	151000											
TAB2	23118	broad.mit.edu	37	chr6	149700010	149700010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cattcagaatatttcaacagGacctcgaaaaaaccagattg	6	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149700010	T	T	149700010	3	4	189	1	0	0	0	0	1	0	0	0	15615	1174	41	3	965	3	TAB2	6	149700010	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	10598797	149700010	21415057	464	151001											
PPIL4	85313	broad.mit.edu	37	chr6	149846373	149846373	+	Intron	DEL	A	-	-													aaagtatttaaaagtgacttAaaaaaaaaaaaaaggaagaa							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149846373	-	-	149846373	6	5	189	0	1	1	0	1	0	0	0	0	12430	377	13	0		0	PPIL4	6	149846373	Intron	DEL	A	TCGA-64-5778-01A-01D-1625-08	146363	149846373	21268694	465	151002											
ULBP2	80328	broad.mit.edu	37	chr6	150267903	150267903	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atacacattcacgttaaaatGacctcctcgtggggcgctcc	8	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150267903	T	T	150267903	1	4	189	0	1	0	0	0	0	0	0	0	17099	1305	45	3		3	ULBP2	6	150267903	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	421530	150267903	20847164	466	151003											
PNLDC1	154197	broad.mit.edu	37	chr6	160239748	160239748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggctttgctgggaagcGgccagtgctctctgggactc	15	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160239748	T	T	160239748	1	4	189	0	1	0	0	0	0	0	0	0	12243	1131	39	1		1	PNLDC1	6	160239748	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	9971845	160239748	10875319	467	151004											
IGF2R	3482	broad.mit.edu	37	chr6	160445784	160445784	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggtgagggatttcttcTatggcttcaatatctttgcc	11	7	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160445784	C	C	160445784	1	2	189	0	1	0	0	0	0	0	0	0	7646	1537	53	5		5	IGF2R	6	160445784	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	206036	160445784	10669283	468	151005											
SLC22A3	6581	broad.mit.edu	37	chr6	160863758	160863758	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttaatgaaatcagacccCtaactcctccctttcaaact	3	13	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160863758	T	T	160863758	1	4	189	0	1	0	0	0	0	0	0	0	14569	696	24	4		4	SLC22A3	6	160863758	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	417974	160863758	10251309	469	151006											
LPA	4018	broad.mit.edu	37	chr6	161016350	161016350	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactcttttcatcccaacgTcctagggtgtggttgtctgg	10	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161016350	A	A	161016350	1	1	189	0	1	0	0	0	0	0	0	0	8990	1682	58	5		5	LPA	6	161016350	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	152592	161016350	10098717	470	151007											
MAP3K4	4216	broad.mit.edu	37	chr6	161470454	161470454	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actatgaaaaatatgctgcaAaagacttccaggacagggtg	10	7	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161470454	G	G	161470454	3	3	189	1	0	0	0	0	1	0	0	0	9344	15	1	5	1160	5	MAP3K4	6	161470454	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	454104	161470454	9644613	471	151008											
C6orf118	168090	broad.mit.edu	37	chr6	165715241	165715241	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctggtgcctctggacccGgcctcctggtagcacagcac	11	17	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165715241	A	A	165715241	2	1	189	1	0	0	0	0	0	0	0	1	2346	1103	39	4		4	C6orf118	6	165715241	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	4244787	165715241	5399826	472	151009											
T	6862	broad.mit.edu	37	chr6	166574331	166574331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacatacattacctggagCtggtaggtgggctggcattg	15	7	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166574331	A	A	166574331	3	1	189	1	0	0	0	0	1	0	0	0	15607	797	28	3	287	3	T	6	166574331	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	859090	166574331	4540736	473	151010											
SDK1	221935	broad.mit.edu	37	chr7	4272883	4272883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcctccccatccctcttGcagatgaaggcttatgggac	9	15	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4272883	T	T	4272883	1	4	189	0	1	0	0	0	0	0	0	0	14081	1334	46	3		3	SDK1	7	4272883	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08		4272883	154865780	474	151011											
THSD7A	221981	broad.mit.edu	37	chr7	11582808	11582808	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatatatggccaacaatatGatttttctgtgtgtatggaa	8	5	1	1	rs111410791		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11582808	T	T	11582808	1	4	189	0	1	0	0	0	0	0	0	0	16002	1305	45	3		3	THSD7A	7	11582808	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	7309925	11582808	147555855	475	151012											
THSD7A	221981	broad.mit.edu	37	chr7	11632861	11632861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagtttcggcagacgctatAcccttctttatttactcacg	7	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11632861	G	G	11632861	1	3	189	0	1	0	0	0	0	0	0	0	16002	406	14	5		5	THSD7A	7	11632861	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	50053	11632861	147505802	476	151013											
THSD7A	221981	broad.mit.edu	37	chr7	11675994	11675994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtggggcattgagcagGtgctccagggccccacatgc	17	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11675994	T	T	11675994	3	4	189	1	0	0	0	0	1	0	0	0	16002	1261	44	3	4292	3	THSD7A	7	11675994	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	43133	11675994	147462669	477	151014											
MEOX2	4223	broad.mit.edu	37	chr7	15666317	15666317	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaatatggcaaagaagaCtgtggacccagggcaattaa	10	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15666317	T	T	15666317	1	4	189	0	1	0	0	0	0	0	0	0	9567	580	20	4		4	MEOX2	7	15666317	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3990323	15666317	143472346	478	151015											
AHR	196	broad.mit.edu	37	chr7	17374516	17374516	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttattttaaacagaggaaGaattgttttaggatatactg	8	2	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17374516	A	A	17374516	3	1	189	1	0	0	0	0	1	0	0	0	416	942	33	4	944	4	AHR	7	17374516	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1708199	17374516	141764147	479	151016											
HDAC9	9734	broad.mit.edu	37	chr7	18687575	18687575	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaggctctcctgcagcaTttattattgaaagaacaaat	6	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18687575	C	C	18687575	2	2	189	1	0	0	0	0	0	0	0	1	7081	1490	52	5		5	HDAC9	7	18687575	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	1313059	18687575	140451088	480	151017											
HDAC9	9734	broad.mit.edu	37	chr7	18869079	18869079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgttcttctctattcCgcagggggttctgctttttt	8	10	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18869079	A	A	18869079	1	1	189	0	1	0	0	0	0	0	0	0	7081	667	23	1		1	HDAC9	7	18869079	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	181504	18869079	140269584	481	151018											
ABCB5	340273	broad.mit.edu	37	chr7	20793041	20793041	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctggcggccagaaacaaaGactagctattgcaagggctc	11	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20793041	T	T	20793041	3	4	189	1	0	0	0	0	1	0	0	0	44	942	33	3	3631	3	ABCB5	7	20793041	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1923962	20793041	138345622	482	151019											
DNAH11	8701	broad.mit.edu	37	chr7	21789516	21789516	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaattcgtctttgagatGtttgctgggcagtctttggg	14	5	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21789516	A	A	21789516	1	1	189	0	1	0	0	0	0	0	0	0	4639	1392	48	4		4	DNAH11	7	21789516	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	996475	21789516	137349147	483	151020											
DNAH11	8701	broad.mit.edu	37	chr7	21827064	21827064	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaactatgacaaagagcacAttccagagaactgtctaaaa	6	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21827064	G	G	21827064	3	3	189	1	0	0	0	0	1	0	0	0	4639	217	8	5	10047	5	DNAH11	7	21827064	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	37548	21827064	137311599	484	151021											
FAM126A	84668	broad.mit.edu	37	chr7	22999696	22999696	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatatgtgtaacataaggGgctccatttttcttactgcc	7	9	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22999696	A	A	22999696	1	1	189	0	1	0	0	0	0	0	0	0	5475	1247	43	4		4	FAM126A	7	22999696	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1172632	22999696	136138967	485	151022											
GPNMB	10457	broad.mit.edu	37	chr7	23306169	23306169	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccccctggagctgagtaGgattcctgatgaaaactgcc	10	12	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23306169	A	A	23306169	3	1	189	1	0	0	0	0	1	0	0	0	6685	1000	35	4	1114	4	GPNMB	7	23306169	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	306473	23306169	135832494	486	151023											
IGF2BP3	10643	broad.mit.edu	37	chr7	23358857	23358857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggataaacagatgaacaGtctccgtttctgattgctgt	10	8	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23358857	C	C	23358857	3	2	189	1	0	0	0	0	1	0	0	0	7645	1029	36	4	539	4	IGF2BP3	7	23358857	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	52688	23358857	135779806	487	151024											
HOXA3	3200	broad.mit.edu	37	chr7	27149826	27149827	+	Frame_Shift_Ins	INS	-	G	G													cactgtgggtgagttgagcaINSgggggctcttggccgcgttg							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27149827	G	G	27149826	7	5	189	1	0	1	1	0	0	0	0	0	7360	188	7	0	905	0	HOXA3	7	27149826	Frame_Shift_Ins	INS	-	TCGA-64-5778-01A-01D-1625-08	3790969	27149826	131988837	488	151025											
TRIL	9865	broad.mit.edu	37	chr7	28996417	28996417	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaagctgagggcgagggatCcgcgcaggatccattttgca	16	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28996417	A	A	28996417	3	1	189	1	0	0	0	0	1	0	0	0	16609	855	30	3	1193	3	TRIL	7	28996417	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1846591	28996417	130142246	489	151026											
CHN2	1124	broad.mit.edu	37	chr7	29440519	29440519	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcgggttaactataggtgcGatttgctgaaatgttggagg	16	4	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29440519	T	T	29440519	1	4	189	0	1	0	0	0	0	0	0	0	3394	1073	37	3		3	CHN2	7	29440519	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	444102	29440519	129698144	490	151027											
TBX20	57057	broad.mit.edu	37	chr7	35242325	35242325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgaaacccaggaaaactgGaagaagatgatacccaggag	12	8	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35242325	T	T	35242325	3	4	189	1	0	0	0	0	1	0	0	0	15778	1174	41	3	285	3	TBX20	7	35242325	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5801806	35242325	123896338	491	151028											
EEPD1	80820	broad.mit.edu	37	chr7	36338682	36338682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggataactggtcttggggcgGggtggcttctgaacactgcc	16	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36338682	T	T	36338682	3	4	189	1	0	0	0	0	1	0	0	0	4972	1232	43	2	1603	2	EEPD1	7	36338682	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1096357	36338682	122799981	492	151029											
EPDR1	54749	broad.mit.edu	37	chr7	37989792	37989792	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttaaaagtcaacttttttCctcttatagatgaaacctgg	5	7	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37989792	A	A	37989792	1	1	189	0	1	0	0	0	0	0	0	0	5205	870	30	3		3	EPDR1	7	37989792	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1651110	37989792	121148871	493	151030											
AMPH	273	broad.mit.edu	37	chr7	38501086	38501086	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagaaaggtcacatgaacaGagctacatggacagattgag	12	6	1	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38501086	T	T	38501086	1	4	189	0	1	0	0	0	0	0	0	0	588	957	33	3		3	AMPH	7	38501086	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	511294	38501086	120637577	494	151031											
INHBA	3624	broad.mit.edu	37	chr7	41730000	41730000	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgggtgcttctgctgctGgaagaggcggatggtgactt	17	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41730000	C	C	41730000	3	2	189	1	0	0	0	0	1	0	0	0	7811	1357	47	4	755	4	INHBA	7	41730000	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3228914	41730000	117408663	495	151032											
GLI3	2737	broad.mit.edu	37	chr7	42088080	42088080	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccagaagcagaatccatcCtggacttaccatctgtaggg	9	12	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42088080	G	G	42088080	1	3	189	0	1	0	0	0	0	0	0	0	6503	696	24	4		4	GLI3	7	42088080	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	358080	42088080	117050583	496	151033											
ADCY1	107	broad.mit.edu	37	chr7	45701615	45701615	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtccgagaggcacaatgtgtCtcattcacagcatttctcct	8	12	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45701615	G	G	45701615	1	3	189	0	1	0	0	0	0	0	0	0	292	928	32	4		4	ADCY1	7	45701615	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3613535	45701615	113437048	497	151034											
VSTM2A	222008	broad.mit.edu	37	chr7	54617553	54617553	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagtccaaggcaatgacatCtcccacaagcttcagatttc	6	12	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54617553	A	A	54617553	2	1	189	1	0	0	0	0	0	0	0	1	17356	903	32	3		3	VSTM2A	7	54617553	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	8915938	54617553	104521110	498	151035											
ZNF716	441234	broad.mit.edu	37	chr7	57522855	57522855	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaatataaagagaaatgaGatggtagccaaacacccagg	10	7	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57522855	T	T	57522855	3	4	189	1	0	0	0	0	1	0	0	0	18247	933	33	3	253	3	ZNF716	7	57522855	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2905302	57522855	101615808	499	151036											
ZNF735	730291	broad.mit.edu	37	chr7	63674534	63674534	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggatgagatgtccacaaGtcaaggaggtagccagtctt	12	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63674534	T	T	63674534	1	4	189	0	1	0	0	0	0	0	0	0	18253	1044	36	3		3	ZNF735	7	63674534	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	6151679	63674534	95464129	500	151037											
ZNF138	7697	broad.mit.edu	37	chr7	64291822	64291822	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatttgttattttttgtttCtttcagctctgtgttctcgt	6	6	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64291822	T	T	64291822	1	4	189	0	1	0	0	0	0	0	0	0	17853	928	32	4		4	ZNF138	7	64291822	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	617288	64291822	94846841	501	151038											
WBSCR17	64409	broad.mit.edu	37	chr7	70880936	70880937	+	Missense_Mutation	DNP	GG	TT	TT													taccccgggctggtgaaggtGgtaagaaatcagaagaggga							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	70880937	TT	TT	70880936	3	4	189	1	0	0	0	0	1	0	0	0	17391	1335	47	2	665	2	WBSCR17	7	70880936	Missense_Mutation	DNP	GG	TCGA-64-5778-01A-01D-1625-08	6589114	70880936	88257727	502	151039											
CALN1	83698	broad.mit.edu	37	chr7	71275311	71275311	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggaggggatggcagcagGggcacctacctccttcaaac	15	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71275311	T	T	71275311	1	4	189	0	1	0	0	0	0	0	0	0	2617	1247	43	2		2	CALN1	7	71275311	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	394375	71275311	87863352	503	151040											
MAGI2	9863	broad.mit.edu	37	chr7	77814822	77814822	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaccttgaatacatgttttAtgtaggtgactaaagtagca	8	6	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77814822	T	T	77814822	1	4	189	0	1	0	0	0	0	0	0	0	9283	464	16	5		5	MAGI2	7	77814822	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	6539511	77814822	81323841	504	151041											
PCLO	27445	broad.mit.edu	37	chr7	82474546	82474546	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctatgctgaataaagagcTagaaaacaagtgggtcagag	11	6	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82474546	C	C	82474546	1	2	189	0	1	0	0	0	0	0	0	0	11677	1537	53	5		5	PCLO	7	82474546	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	4659724	82474546	76664117	505	151042											
PCLO	27445	broad.mit.edu	37	chr7	82579217	82579217	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgacatcctaaactgcCccctttgtaagtcttttcag	6	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82579217	T	T	82579217	3	4	189	1	0	0	0	0	1	0	0	0	11677	623	22	4	4838	4	PCLO	7	82579217	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	104671	82579217	76559446	506	151043											
SEMA3A	10371	broad.mit.edu	37	chr7	83634567	83634567	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgcacagagggttggcaTcccaacccctgagatgttca	10	12	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83634567	A	A	83634567	1	1	189	0	1	0	0	0	0	0	0	0	14137	1450	50	5		5	SEMA3A	7	83634567	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1055350	83634567	75504096	507	151044											
KIAA1324L	222223	broad.mit.edu	37	chr7	86568314	86568314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagcatgggagggggacCcaataccaataagcaaatca	11	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86568314	A	A	86568314	1	1	189	0	1	0	0	0	0	0	0	0	8294	638	22	2		2	KIAA1324L	7	86568314	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2933747	86568314	72570349	508	151045											
ABCB4	5244	broad.mit.edu	37	chr7	87041230	87041230	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataacatctctgaagcgcAtatgtccattcacaatgaga	7	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87041230	G	G	87041230	3	3	189	1	0	0	0	0	1	0	0	0	43	217	8	5	981	5	ABCB4	7	87041230	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	472916	87041230	72097433	509	151046											
SAMD9L	219285	broad.mit.edu	37	chr7	92764413	92764413	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattgttctgcagaaggactTccacaaaccttggctcccga	8	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92764413	C	C	92764413	3	2	189	1	0	0	0	0	1	0	0	0	13938	1783	62	5	3886	5	SAMD9L	7	92764413	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	5723183	92764413	66374250	510	151047											
DYNC1I1	1780	broad.mit.edu	37	chr7	95662065	95662065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatggcaaaatgtgttcctgGagcctggacatgctctcaac	11	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95662065	T	T	95662065	3	4	189	1	0	0	0	0	1	0	0	0	4882	1183	41	3	1296	3	DYNC1I1	7	95662065	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2897652	95662065	63476598	511	151048											
PILRB	29990	broad.mit.edu	37	chr7	99950972	99950972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaagctgtacagactcaCttgatcctccttcccccgcg	7	18	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99950972	T	T	99950972	1	4	189	0	1	0	0	0	0	0	0	0	12021	580	20	4		4	PILRB	7	99950972	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4288907	99950972	59187691	512	151049											
SLC26A5	375611	broad.mit.edu	37	chr7	103017972	103017972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaaaagagagcctagccCacctccctgattatgctgat	9	11	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103017972	A	A	103017972	1	1	189	0	1	0	0	0	0	0	0	0	14634	609	21	2		2	SLC26A5	7	103017972	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3067000	103017972	56120691	513	151050											
RELN	5649	broad.mit.edu	37	chr7	103294493	103294493	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttttgacttgggcttgtccAgggtggtctgaggtggtcta	16	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103294493	T	T	103294493	1	4	189	0	1	0	0	0	0	0	0	0	13328	203	7	5		5	RELN	7	103294493	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	276521	103294493	55844170	514	151051											
LAMB1	3912	broad.mit.edu	37	chr7	107592472	107592472	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctcattgcaagatggcccGaaggaatgagcagcattgca	11	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107592472	A	A	107592472	2	1	189	1	0	0	0	0	0	0	0	1	8682	1049	37	4		4	LAMB1	7	107592472	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	4297979	107592472	51546191	515	151052											
LAMB4	22798	broad.mit.edu	37	chr7	107695926	107695926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagcgtgagctatggcgcCcggcccagcctggttattaa	12	12	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107695926	A	A	107695926	1	1	189	0	1	0	0	0	0	0	0	0	8685	638	22	2		2	LAMB4	7	107695926	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	103454	107695926	51442737	516	151053											
NRCAM	4897	broad.mit.edu	37	chr7	107822187	107822187	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgaaacaaataagccccaCctcctgtggtatgcatgaca	7	11	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107822187	T	T	107822187	1	4	189	0	1	0	0	0	0	0	0	0	10739	522	18	4		4	NRCAM	7	107822187	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	126261	107822187	51316476	517	151054											
TMEM168	64418	broad.mit.edu	37	chr7	112407810	112407810	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatctccacctgtgaacaaGagaaaattcaatggagcaat	8	8	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112407810	A	A	112407810	1	1	189	0	1	0	0	0	0	0	0	0	16206	957	33	4		4	TMEM168	7	112407810	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4585623	112407810	46730853	518	151055											
WNT2	7472	broad.mit.edu	37	chr7	116960854	116960854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctctcatgtacctataaGggaccaaccaacacagaggt	8	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116960854	T	T	116960854	1	4	189	0	1	0	0	0	0	0	0	0	17513	1015	35	2		2	WNT2	7	116960854	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4553044	116960854	42177809	519	151056											
CTTNBP2	83992	broad.mit.edu	37	chr7	117407198	117407198	+	Frame_Shift_Del	DEL	C	-	-													tctctcctttctggctcaagCcctccgtgcctacacaagat							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117407198	-	-	117407198	7	5	189	1	0	1	0	1	0	0	0	0	4079	726	26	0	2240	0	CTTNBP2	7	117407198	Frame_Shift_Del	DEL	C	TCGA-64-5778-01A-01D-1625-08	446344	117407198	41731465	520	151057											
C7orf58	79974	broad.mit.edu	37	chr7	120629670	120629670	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggccaagtgaagctgaaCtggtcatggtctgtcgccca	14	10	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120629670	A	A	120629670	1	1	189	1	0	0	0	0	0	0	0	0	2430	580	20	3		3	C7orf58	7	120629670	Translation_Start_Site	SNP	C	TCGA-64-5778-01A-01D-1625-08	3222472	120629670	38508993	521	151058											
C7orf58	79974	broad.mit.edu	37	chr7	120782254	120782254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatctgttaacccaggcGgaaaatgccaaatgaaaatt	8	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120782254	T	T	120782254	1	4	189	0	1	0	0	0	0	0	0	0	2430	1131	39	1		1	C7orf58	7	120782254	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	152584	120782254	38356409	522	151059											
PTPRZ1	5803	broad.mit.edu	37	chr7	121651939	121651939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgtttcttacagttctGcaatacctgtgcatgattct	6	10	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121651939	T	T	121651939	3	4	189	1	0	0	0	0	1	0	0	0	12922	1319	46	3	2885	3	PTPRZ1	7	121651939	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	869685	121651939	37486724	523	151060											
PTPRZ1	5803	broad.mit.edu	37	chr7	121652034	121652034	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctaagtcttcgttaataacCccaactgcatcattactgca	4	13	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121652034	G	G	121652034	2	3	189	1	0	0	0	0	0	0	0	1	12922	610	22	4		4	PTPRZ1	7	121652034	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	95	121652034	37486629	524	151061											
ARF5	381	broad.mit.edu	37	chr7	127229110	127229110	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctccctcgctcccatctCcatccctgtgcccctttccg	7	21	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127229110	T	T	127229110	1	4	189	0	1	0	0	0	0	0	0	0	849	870	30	4		4	ARF5	7	127229110	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	5577076	127229110	31909553	525	151062											
COPG2	26958	broad.mit.edu	37	chr7	130295897	130295897	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaaactgtgacttgagacCagatttagtaaacttattca	7	7	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130295897	G	G	130295897	3	3	189	1	0	0	0	0	1	0	0	0	3764	594	21	4	562	4	COPG2	7	130295897	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3066787	130295897	28842766	526	151063											
PLXNA4	91584	broad.mit.edu	37	chr7	131859727	131859727	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctggatggggaggctccagGagtcacctccatctcagaat	13	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131859727	T	T	131859727	1	4	189	0	1	0	0	0	0	0	0	0	12217	1189	41	3		3	PLXNA4	7	131859727	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1563830	131859727	27278936	527	151064											
NUP205	23165	broad.mit.edu	37	chr7	135261743	135261743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcttccatgacaacacGctttacagatgagctgatgg	11	10	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135261743	T	T	135261743	3	4	189	1	0	0	0	0	1	0	0	0	10854	1087	38	3	533	3	NUP205	7	135261743	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3402016	135261743	23876920	528	151065											
NUP205	23165	broad.mit.edu	37	chr7	135333220	135333220	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctggacattgaaggattAtattcaaaagttcgatctcg	8	7	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135333220	G	G	135333220	2	3	189	1	0	0	0	0	0	0	0	1	10854	446	16	5		5	NUP205	7	135333220	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	71477	135333220	23805443	529	151066											
CHRM2	1129	broad.mit.edu	37	chr7	136622967	136622967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacttctcactcagggtaCctttgttactgaatctttag	7	9	3	1	rs112485957		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136622967	A	A	136622967	1	1	189	0	1	0	0	0	0	0	0	0	3408	522	18	3		3	CHRM2	7	136622967	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1289747	136622967	22515696	530	151067											
UBN2	254048	broad.mit.edu	37	chr7	138946381	138946381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcggggggtgaaaatggaaCcaccacccagccaacctaca	11	13	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138946381	A	A	138946381	3	1	189	1	0	0	0	0	1	0	0	0	17019	507	18	3	1311	3	UBN2	7	138946381	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2323414	138946381	20192282	531	151068											
KLRG2	346689	broad.mit.edu	37	chr7	139164786	139164786	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaccatgtcttcgtgttgcAtctcccagtgtctctttcta	7	13	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139164786	C	C	139164786	1	2	189	0	1	0	0	0	0	0	0	0	8493	232	8	5		5	KLRG2	7	139164786	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	218405	139164786	19973877	532	151069											
TBXAS1	6916	broad.mit.edu	37	chr7	139719828	139719830	+	In_Frame_Del	DEL	CCG	-	-													aattttctctattttaggtaCcgctgcagctagaatccaaa					rs13306050	byFrequency;by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139719830	-	-	139719828	7	5	189	1	0	1	0	1	0	0	0	0	15786	519	18	0	1726	0	TBXAS1	7	139719828	In_Frame_Del	DEL	CCG	TCGA-64-5778-01A-01D-1625-08	555042	139719828	19418835	533	151070											
DENND2A	27147	broad.mit.edu	37	chr7	140269427	140269427	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattcttgcgggaggagggcTggtggtgggggttctacctt	19	6	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140269427	A	A	140269427	1	1	189	0	1	0	0	0	0	0	0	0	4469	1595	55	5		5	DENND2A	7	140269427	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	549599	140269427	18869236	534	151071											
MGAM	8972	broad.mit.edu	37	chr7	141781889	141781889	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaatgacatgtttatccGcatctccacccgccttccct	4	17	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141781889	A	A	141781889	1	1	189	0	1	0	0	0	0	0	0	0	9634	1102	38	4		4	MGAM	7	141781889	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1512462	141781889	17356774	535	151072											
TRYX3	136541	broad.mit.edu	37	chr7	141955399	141955399	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcacccaaagcgggtggatCaggactccagcgcagggcaa	13	12	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141955399	T	T	141955399	2	4	189	1	0	0	0	0	0	0	0	1	16729	813	29	4		4	TRYX3	7	141955399	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	173510	141955399	17183264	536	151073											
PRSS1	5644	broad.mit.edu	37	chr7	142458452	142458452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatcgttgggggctacaaCtgtgaggagaattctgtccc	13	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142458452	A	A	142458452	3	1	189	1	0	0	0	0	1	0	0	0	12720	564	20	3	93	3	PRSS1	7	142458452	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	503053	142458452	16680211	537	151074											
TRPV5	56302	broad.mit.edu	37	chr7	142627356	142627356	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctccagagacaccctcCaaggccctatttcacaaact	6	16	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142627356	A	A	142627356	1	1	189	0	1	0	0	0	0	0	0	0	16724	609	21	2		2	TRPV5	7	142627356	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	168904	142627356	16511307	538	151075											
CLCN1	1180	broad.mit.edu	37	chr7	143036384	143036384	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaccactatgcccataccCtgcggaggcttcatgcctgt	9	16	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143036384	T	T	143036384	2	4	189	1	0	0	0	0	0	0	0	1	3493	668	24	4		4	CLCN1	7	143036384	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	409028	143036384	16102279	539	151076											
FAM131B	9715	broad.mit.edu	37	chr7	143056554	143056554	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggcagaggaataagaagGtacgggcgtgctttatacat	14	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143056554	A	A	143056554	1	1	189	0	1	0	0	0	0	0	0	0	5486	1276	44	4		4	FAM131B	7	143056554	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	20170	143056554	16082109	540	151077											
SSPO	23145	broad.mit.edu	37	chr7	149522153	149522153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggcagaggccctctgtgGaggaggctgccgggagccat	18	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149522153	T	T	149522153	3	4	189	1	0	0	0	0	1	0	0	0	15307	1174	41	3	14316	3	SSPO	7	149522153	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	6465599	149522153	9616510	541	151078											
NOS3	4846	broad.mit.edu	37	chr7	150704420	150704420	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggatgcctcctcctgCctcactctgccctgattctg	8	18	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150704420	G	G	150704420	1	3	189	0	1	0	0	0	0	0	0	0	10639	754	26	4		4	NOS3	7	150704420	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1182267	150704420	8434243	542	151079											
ATG9B	285973	broad.mit.edu	37	chr7	150720740	150720740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctccaagaggaccttccCatgccacctctgcaggccta	8	17	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150720740	A	A	150720740	1	1	189	0	1	0	0	0	0	0	0	0	1107	609	21	2		2	ATG9B	7	150720740	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	16320	150720740	8417923	543	151080											
MLL3	58508	broad.mit.edu	37	chr7	151944919	151944919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatccacaccaaagctacaCatataccttctgattttata	2	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151944919	A	A	151944919	1	1	189	0	1	0	0	0	0	0	0	0	9715	493	17	3		3	MLL3	7	151944919	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1224179	151944919	7193744	544	151081											
ACTR3B	57180	broad.mit.edu	37	chr7	152549293	152549293	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgaagagagtggtggatgCtaggctgaggctcagcgagg	18	5	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152549293	T	T	152549293	3	4	189	1	0	0	0	0	1	0	0	0	213	797	28	4	1072	4	ACTR3B	7	152549293	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	604374	152549293	6589370	545	151082											
DPP6	1804	broad.mit.edu	37	chr7	154679205	154679205	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccgcctgatgccccttgtAaagacccaaatgatttaggt	8	11	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154679205	G	G	154679205	1	3	189	0	1	0	0	0	0	0	0	0	4770	377	13	5		5	DPP6	7	154679205	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2129912	154679205	4459458	546	151083											
MYOM2	9172	broad.mit.edu	37	chr8	2027642	2027642	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacctttctctccgcagcCgttcatttggagggagagaa	10	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2027642	T	T	2027642	2	4	189	1	0	0	0	0	0	0	0	1	10186	666	23	4		4	MYOM2	8	2027642	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08		2027642	144336380	547	151084											
DEFB104A	140596	broad.mit.edu	37	chr8	7698501	7698501	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaccttctaccaaagcCttgccttttggtgccagtaa	6	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7698501	A	A	7698501	1	1	189	0	1	0	0	0	0	0	0	0	4430	696	24	2		2	DEFB104A	8	7698501	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	5670859	7698501	138665521	548	151085											
DLC1	10395	broad.mit.edu	37	chr8	12943187	12943187	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatgtatcaaattgctAtagtcaattcctacactcca	3	9	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12943187	G	G	12943187	1	3	189	0	1	0	0	0	0	0	0	0	4590	464	16	5		5	DLC1	8	12943187	3'UTR	SNP	A	TCGA-64-5778-01A-01D-1625-08	5244686	12943187	133420835	549	151086											
SH2D4A	63898	broad.mit.edu	37	chr8	19192410	19192410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgcggaatttcatcatgGgggagaaaaagctattgagg	14	5	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19192410	T	T	19192410	1	4	189	0	1	0	0	0	0	0	0	0	14348	1247	43	2		2	SH2D4A	8	19192410	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	6249223	19192410	127171612	550	151087											
KCNU1	157855	broad.mit.edu	37	chr8	36767090	36767090	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaaagttaatatttataagGatttcaatattaataggact	6	2	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36767090	C	C	36767090	1	2	189	0	1	0	0	0	0	0	0	0	8163	1189	41	4		4	KCNU1	8	36767090	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	17574680	36767090	109596932	551	151088											
FGFR1	2260	broad.mit.edu	37	chr8	38285346	38285346	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acctgtataggtggaaagtaTtacttaaaaaaatgaaaagc	8	4	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38285346	A	A	38285346	1	1	189	0	1	0	0	0	0	0	0	0	5920	1508	52	5		5	FGFR1	8	38285346	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1518256	38285346	108078676	552	151089											
HTRA4	203100	broad.mit.edu	37	chr8	38832622	38832622	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtggagaaggtggcgccatCggtggttcacgtgcagctgt	18	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38832622	T	T	38832622	3	4	189	1	0	0	0	0	1	0	0	0	7526	893	31	4	545	4	HTRA4	8	38832622	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	547276	38832622	107531400	553	151090											
PLAT	5327	broad.mit.edu	37	chr8	42046329	42046329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttattttttgtagagaCaggggacttgctatgtttgc	10	4	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42046329	A	A	42046329	1	1	189	0	1	0	0	0	0	0	0	0	12116	493	17	3		3	PLAT	8	42046329	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3213707	42046329	104317693	554	151091											
RNF170	81790	broad.mit.edu	37	chr8	42720424	42720424	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaataataataataatatatGgtgacatcaaagaagatttg	6	2	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42720424	A	A	42720424	1	1	189	0	1	0	0	0	0	0	0	0	13573	1363	47	4		4	RNF170	8	42720424	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	674095	42720424	103643598	555	151092											
MCM4	4173	broad.mit.edu	37	chr8	48875661	48875661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctagaaagaatgtttccagAtaacagaaattcttcagtaa	6	6	3	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48875661	G	G	48875661	1	3	189	0	1	0	0	0	0	0	0	0	9482	348	12	5		5	MCM4	8	48875661	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	6155237	48875661	97488361	556	151093											
SNTG1	54212	broad.mit.edu	37	chr8	51442811	51442811	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacatctcaactaccatcccAacaatacagtaagatgaccc	3	14	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51442811	T	T	51442811	3	4	189	1	0	0	0	0	1	0	0	0	14988	130	5	5	571	5	SNTG1	8	51442811	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	2567150	51442811	94921211	557	151094											
SNTG1	54212	broad.mit.edu	37	chr8	51569590	51569590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctggcacctccagtacGtgttttattgaaatgtattg	9	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51569590	T	T	51569590	1	4	189	0	1	0	0	0	0	0	0	0	14988	1160	40	3		3	SNTG1	8	51569590	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	126779	51569590	94794432	558	151095											
PXDNL	137902	broad.mit.edu	37	chr8	52233535	52233535	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatcaataacatggtttgatGaaatgctctattctgtaagc	7	6	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52233535	C	C	52233535	1	2	189	0	1	0	0	0	0	0	0	0	12956	1305	45	4		4	PXDNL	8	52233535	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	663945	52233535	94130487	559	151096											
PCMTD1	115294	broad.mit.edu	37	chr8	52733190	52733190	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctttgaggaatccccttGgcctgcatctcatcatttat	7	13	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52733190	T	T	52733190	2	4	189	1	0	0	0	0	0	0	0	1	11680	1335	47	2		2	PCMTD1	8	52733190	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	499655	52733190	93630832	560	151097											
TCEA1	6917	broad.mit.edu	37	chr8	54885561	54885561	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatcacttgggatgagaCtgaacatgaaagaattacaa	10	5	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54885561	T	T	54885561	1	4	189	0	1	0	0	0	0	0	0	0	15789	580	20	4		4	TCEA1	8	54885561	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2152371	54885561	91478461	561	151098											
RP1	6101	broad.mit.edu	37	chr8	55534202	55534202	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaccctactaattggattCgtgtgggatatgaatggtgg	13	6	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55534202	T	T	55534202	1	4	189	0	1	0	0	0	0	0	0	0	13643	899	31	4		4	RP1	8	55534202	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	648641	55534202	90829820	562	151099											
UBXN2B	137886	broad.mit.edu	37	chr8	59339292	59339292	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agacccgttccttgctcaggCtccactgggctcggtcacgt	11	15	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59339292	T	T	59339292	1	4	189	0	1	0	0	0	0	0	0	0	17041	812	28	4		4	UBXN2B	8	59339292	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3805090	59339292	87024730	563	151100											
NKAIN3	286183	broad.mit.edu	37	chr8	63768392	63768392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatcctggaggagtcacCagaaatttctggtcatccaa	10	9	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63768392	A	A	63768392	1	1	189	0	1	0	0	0	0	0	0	0	10532	609	21	2		2	NKAIN3	8	63768392	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4429100	63768392	82595630	564	151101											
NKAIN3	286183	broad.mit.edu	37	chr8	63776051	63776051	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgatactcttcagacaacGtactgggtgggaggccttga	12	8	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63776051	A	A	63776051	1	1	189	0	1	0	0	0	0	0	0	0	10532	1160	40	4		4	NKAIN3	8	63776051	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	7659	63776051	82587971	565	151102											
NKAIN3	286183	broad.mit.edu	37	chr8	63777405	63777405	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgcataaacacttcacGgaagacatccagatgagtca	10	10	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63777405	C	C	63777405	1	2	189	0	1	0	0	0	0	0	0	0	10532	1131	39	4		4	NKAIN3	8	63777405	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1354	63777405	82586617	566	151103											
TRPA1	8989	broad.mit.edu	37	chr8	72969098	72969098	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attataataaacaaaattagTttattttctgttgaacccaa	3	5	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72969098	A	A	72969098	1	1	189	0	1	0	0	0	0	0	0	0	16702	1740	60	5		5	TRPA1	8	72969098	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	9191693	72969098	73394924	567	151104											
ZFHX4	79776	broad.mit.edu	37	chr8	77764145	77764145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtaaacagcaaagataCccatttagatgccaaagaat	7	8	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77764145	A	A	77764145	3	1	189	1	0	0	0	0	1	0	0	0	17761	507	18	3	5022	3	ZFHX4	8	77764145	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	4795047	77764145	68599877	568	151105											
SLC7A13	157724	broad.mit.edu	37	chr8	87226561	87226561	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttcaccatgaatgttcTatcatatgtttaaccttgat	5	7	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87226561	C	C	87226561	1	2	189	0	1	0	0	0	0	0	0	0	14809	1537	53	5		5	SLC7A13	8	87226561	3'UTR	SNP	T	TCGA-64-5778-01A-01D-1625-08	9462416	87226561	59137461	569	151106											
CNGB3	54714	broad.mit.edu	37	chr8	87673918	87673918	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcttcctcttcttctgaAgtcacttctattttcccatt	2	13	7	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87673918	G	G	87673918	1	3	189	0	1	0	0	0	0	0	0	0	3633	87	3	5		5	CNGB3	8	87673918	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	447357	87673918	58690104	570	151107											
CNBD1	168975	broad.mit.edu	37	chr8	88296903	88296903	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattgtctctggtatttttaCagcttagcaaatggagtacc	8	7	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88296903	G	G	88296903	1	3	189	0	1	0	0	0	0	0	0	0	3623	493	17	4		4	CNBD1	8	88296903	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	622985	88296903	58067119	571	151108											
NBN	4683	broad.mit.edu	37	chr8	90976832	90976832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacctcttttttttcctccCaaataattttatggtataga	3	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90976832	A	A	90976832	1	1	189	0	1	0	0	0	0	0	0	0	10285	609	21	2		2	NBN	8	90976832	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2679929	90976832	55387190	572	151109											
GDF6	392255	broad.mit.edu	37	chr8	97172755	97172755	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcccgcgtcactgtcgcGcggcgcccgctgcatcttgc	13	19	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97172755	A	A	97172755	3	1	189	1	0	0	0	0	1	0	0	0	6381	1087	38	4	1209	4	GDF6	8	97172755	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	6195923	97172755	49191267	573	151110											
STK3	6788	broad.mit.edu	37	chr8	99761440	99761440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtaacaaaataccaacTagtcagattctaaaatatca	4	8	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99761440	C	C	99761440	1	2	189	0	1	0	0	0	0	0	0	0	15413	1537	53	5		5	STK3	8	99761440	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	2588685	99761440	46602582	574	151111											
RGS22	26166	broad.mit.edu	37	chr8	101051226	101051226	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgatgataagcctgcAggtcaaaccaaaagtacaca	8	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101051226	C	C	101051226	3	2	189	1	0	0	0	0	1	0	0	0	13414	188	7	5	1751	5	RGS22	8	101051226	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	1289786	101051226	45312796	575	151112											
ZFPM2	23414	broad.mit.edu	37	chr8	106814054	106814054	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcagatggctaagtccCcagagttccctagtgtgtca	12	11	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106814054	G	G	106814054	3	3	189	1	0	0	0	0	1	0	0	0	17784	623	22	4	1774	4	ZFPM2	8	106814054	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	5762828	106814054	39549968	576	151113											
CSMD3	114788	broad.mit.edu	37	chr8	113323375	113323375	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatccatgaggtggggattCtggtgtactacagtagaaag	13	5	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113323375	A	A	113323375	4	1	189	1	0	0	0	0	0	1	0	0	3980	922	32	3	3494	3	CSMD3	8	113323375	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	6509321	113323375	33040647	577	151114											
CSMD3	114788	broad.mit.edu	37	chr8	113326309	113326309	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaataaaacaatttagAtaaagctaattatattctca	3	4	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113326309	G	G	113326309	1	3	189	0	1	0	0	0	0	0	0	0	3980	348	12	5		5	CSMD3	8	113326309	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2934	113326309	33037713	578	151115											
CSMD3	114788	broad.mit.edu	37	chr8	113420532	113420532	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttagtgtgtttctagacTacagggtcacttaccttggt	9	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113420532	A	A	113420532	1	1	189	0	1	0	0	0	0	0	0	0	3980	1537	53	5		5	CSMD3	8	113420532	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	94223	113420532	32943490	579	151116											
CSMD3	114788	broad.mit.edu	37	chr8	113599512	113599512	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtttaatagatagcagtaTcattttcaagcaatatcatg	6	6	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113599512	C	C	113599512	1	2	189	0	1	0	0	0	0	0	0	0	3980	1450	50	5		5	CSMD3	8	113599512	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	178980	113599512	32764510	580	151117											
CSMD3	114788	broad.mit.edu	37	chr8	113694949	113694949	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatattttggaaaagagagaGagagaaagagatattttaaa	10	0	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113694949	T	T	113694949	1	4	189	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113694949	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	95437	113694949	32669073	581	151118											
ANXA13	312	broad.mit.edu	37	chr8	124696964	124696965	+	Splice_Site	DNP	TG	CT	CT													caatcctgggcacatctcacTgggcaggacaaaggaaaaga							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	124696965	CT	CT	124696964	5	2	189	1	0	0	0	0	0	0	1	0	717	1594	55	5	241	5	ANXA13	8	124696964	Splice_Site	DNP	TG	TCGA-64-5778-01A-01D-1625-08	11002015	124696964	21667058	582	151119											
FER1L6	654463	broad.mit.edu	37	chr8	125094783	125094783	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactctgcatcccagttgtcCatctctaggaaggccagacc	9	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125094783	G	G	125094783	1	3	189	0	1	0	0	0	0	0	0	0	5872	609	21	4		4	FER1L6	8	125094783	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	397819	125094783	21269239	583	151120											
TG	7038	broad.mit.edu	37	chr8	133975184	133975184	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactaccattttgttgaccaGtggagtactacccattctcc	6	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133975184	C	C	133975184	1	2	189	0	1	0	0	0	0	0	0	0	15936	1044	36	4		4	TG	8	133975184	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	8880401	133975184	12388838	584	151121											
COL22A1	169044	broad.mit.edu	37	chr8	139890183	139890183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcggcgtccagcaccagGtcctggctgcggccgtcggt	16	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139890183	T	T	139890183	3	4	189	1	0	0	0	0	1	0	0	0	3713	1252	44	3	4664	3	COL22A1	8	139890183	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5914999	139890183	6473839	585	151122											
KANK1	23189	broad.mit.edu	37	chr9	676866	676866	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaaatgatccattttgAtggggctctctttattgttt	7	5	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	676866	G	G	676866	1	3	189	0	1	0	0	0	0	0	0	0	8046	348	12	5		5	KANK1	9	676866	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08		676866	140536565	586	151123											
KIAA2026	158358	broad.mit.edu	37	chr9	5921606	5921606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggagtcccactgattaCatctccatttgttgctgctg	8	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5921606	A	A	5921606	3	1	189	1	0	0	0	0	1	0	0	0	8340	478	17	3	1925	3	KIAA2026	9	5921606	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	5244740	5921606	135291825	587	151124											
PTPRD	5789	broad.mit.edu	37	chr9	8493031	8493031	+	Intron	DEL	T	-	-													aaaacatgctactaatgctcTgggggaaaaacaaggccgtc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8493031	-	-	8493031	6	5	189	0	1	1	0	1	0	0	0	0	12907	1595	55	0		0	PTPRD	9	8493031	Intron	DEL	T	TCGA-64-5778-01A-01D-1625-08	2571425	8493031	132720400	588	151125											
TTC39B	158219	broad.mit.edu	37	chr9	15226078	15226078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaagtctacaccagtgCaattacacaacataagtctt	6	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15226078	A	A	15226078	1	1	189	0	1	0	0	0	0	0	0	0	16834	725	25	3		3	TTC39B	9	15226078	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	6733047	15226078	125987353	589	151126											
SNAPC3	6619	broad.mit.edu	37	chr9	15433602	15433602	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaccattacaatagatcgaGcctgcagacaagaaacattc	6	10	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15433602	A	A	15433602	3	1	189	1	0	0	0	0	1	0	0	0	14950	971	34	4	455	4	SNAPC3	9	15433602	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	207524	15433602	125779829	590	151127											
KLHL9	55958	broad.mit.edu	37	chr9	21334168	21334168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattaactttgcagcataatCcatccgagggtcttccaacc	6	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21334168	A	A	21334168	3	1	189	1	0	0	0	0	1	0	0	0	8467	855	30	3	1166	3	KLHL9	9	21334168	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	5900566	21334168	119879263	591	151128											
MTAP	4507	broad.mit.edu	37	chr9	21815398	21815398	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctaataaaaattaccaaAtacaataatcttctctgtct	1	8	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21815398	T	T	21815398	1	4	189	0	1	0	0	0	0	0	0	0	10005	116	4	5		5	MTAP	9	21815398	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	481230	21815398	119398033	592	151129											
ACO1	48	broad.mit.edu	37	chr9	32424649	32424649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaggactttgagagcTgccttggagccaaggtaggg	15	6	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32424649	A	A	32424649	3	1	189	1	0	0	0	0	1	0	0	0	146	1580	55	5	1208	5	ACO1	9	32424649	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	10609251	32424649	108788782	593	151130											
TAF1L	138474	broad.mit.edu	37	chr9	32630549	32630549	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagaggcatctcgagacgTactgagggatgtgttggtat	14	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32630549	C	C	32630549	3	2	189	1	0	0	0	0	1	0	0	0	15642	1638	57	5	455	5	TAF1L	9	32630549	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	205900	32630549	108582882	594	151131											
TAF1L	138474	broad.mit.edu	37	chr9	32631092	32631092	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctttaagtttttcatcacAgagatccagcatggattgag	8	8	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32631092	T	T	32631092	3	4	189	1	0	0	0	0	1	0	0	0	15642	188	7	5	998	5	TAF1L	9	32631092	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	543	32631092	108582339	595	151132											
APBA1	320	broad.mit.edu	37	chr9	72071390	72071390	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtaagtccagctcagcatCtaatgacctaagaaagcgcc	10	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72071390	A	A	72071390	1	1	189	0	1	0	0	0	0	0	0	0	758	928	32	3		3	APBA1	9	72071390	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	39440298	72071390	69142041	596	151133											
SMC5	23137	broad.mit.edu	37	chr9	72879306	72879306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaagtcgagcattgtgtGtgccatttgccttggtttag	14	6	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72879306	T	T	72879306	3	4	189	1	0	0	0	0	1	0	0	0	14900	1377	48	3	278	3	SMC5	9	72879306	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	807916	72879306	68334125	597	151134											
SMC5	23137	broad.mit.edu	37	chr9	72965093	72965093	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagtagtactcaactgcatGaattaactcctcatcatcaa	5	10	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72965093	A	A	72965093	3	1	189	1	0	0	0	0	1	0	0	0	14900	1291	45	4	3043	4	SMC5	9	72965093	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	85787	72965093	68248338	598	151135											
TRPM3	80036	broad.mit.edu	37	chr9	73442747	73442747	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacgagccatgccagtgggAacaaccgctacttacttgtg	10	12	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73442747	T	T	73442747	1	4	189	0	1	0	0	0	0	0	0	0	16712	261	9	5		5	TRPM3	9	73442747	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	477654	73442747	67770684	599	151136											
TRPM6	140803	broad.mit.edu	37	chr9	77358877	77358877	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaaattggaatgttcttcCcatcaaagtgaacaataact	6	7	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77358877	T	T	77358877	1	4	189	0	1	0	0	0	0	0	0	0	16715	638	22	4		4	TRPM6	9	77358877	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3916130	77358877	63854554	600	151137											
TRPM6	140803	broad.mit.edu	37	chr9	77502755	77502756	+	Frame_Shift_Ins	INS	-	T	T													ttacctgcaagcgctccaagINSacaggttgttctttcatctt							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77502756	T	T	77502755	7	5	189	1	0	1	1	0	0	0	0	0	16715	929	33	0	6250	0	TRPM6	9	77502755	Frame_Shift_Ins	INS	-	TCGA-64-5778-01A-01D-1625-08	143878	77502755	63710676	601	151138											
PCSK5	5125	broad.mit.edu	37	chr9	78710935	78710935	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagcagcactgcagaaagcGgaaagaaaccttggtacctg	11	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78710935	C	C	78710935	3	2	189	1	0	0	0	0	1	0	0	0	11697	1117	39	4	1054	4	PCSK5	9	78710935	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1208180	78710935	62502496	602	151139											
RASEF	158158	broad.mit.edu	37	chr9	85605398	85605399	+	Intron	DEL	AC	-	-													tacgtctgtaaaaaagaaatAcacacaattaaatgaagccc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85605399	-	-	85605398	6	5	189	0	1	1	0	1	0	0	0	0	13176	406	14	0		0	RASEF	9	85605398	Intron	DEL	AC	TCGA-64-5778-01A-01D-1625-08	6894463	85605398	55608033	603	151140											
C9orf79	286234	broad.mit.edu	37	chr9	90501444	90501444	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcttgccctcccagccttCtgactttgcagggaagggca	10	15	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90501444	T	T	90501444	3	4	189	1	0	0	0	0	1	0	0	0	2523	913	32	4	2056	4	C9orf79	9	90501444	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	4896046	90501444	50711987	604	151141											
C9orf79	286234	broad.mit.edu	37	chr9	90501555	90501555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagggccggacccaagccGggatcaaggctcaggaagga	15	11	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90501555	T	T	90501555	3	4	189	1	0	0	0	0	1	0	0	0	2523	1116	39	1	2167	1	C9orf79	9	90501555	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	111	90501555	50711876	605	151142											
WNK2	65268	broad.mit.edu	37	chr9	96061654	96061654	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgcaagctgtggcaaaggCtgttgagaggcttcttttaa	13	6	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96061654	G	G	96061654	1	3	189	0	1	0	0	0	0	0	0	0	17505	812	28	4		4	WNK2	9	96061654	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	5560099	96061654	45151777	606	151143											
HSD17B3	3293	broad.mit.edu	37	chr9	99007588	99007588	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaactgggagaaataagaGgaagaaggaagagacttgga	15	4	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99007588	A	A	99007588	1	1	189	0	1	0	0	0	0	0	0	0	7452	1015	35	4		4	HSD17B3	9	99007588	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2945934	99007588	42205843	607	151144											
TDRD7	23424	broad.mit.edu	37	chr9	100222868	100222868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgcagggcaagcacatGgtgataatgatatcaaggct	13	6	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100222868	T	T	100222868	3	4	189	1	0	0	0	0	1	0	0	0	15857	1348	47	2	1286	2	TDRD7	9	100222868	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1215280	100222868	40990563	608	151145											
GRIN3A	116443	broad.mit.edu	37	chr9	104449121	104449121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggaatctcccagcaccCaacgaagttcagggggcatg	12	12	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104449121	A	A	104449121	3	1	189	1	0	0	0	0	1	0	0	0	6849	595	21	2	2318	2	GRIN3A	9	104449121	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	4226253	104449121	36764310	609	151146											
OR13D1	286365	broad.mit.edu	37	chr9	107457241	107457241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgcaaatggctgcatggtCctggatcataggctgtctga	13	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107457241	A	A	107457241	3	1	189	1	0	0	0	0	1	0	0	0	11034	855	30	3	541	3	OR13D1	9	107457241	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3008120	107457241	33756190	610	151147											
TMEM38B	55151	broad.mit.edu	37	chr9	108510527	108510527	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtataactattcccctttGatacaattttgcatgctggg	7	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108510527	T	T	108510527	1	4	189	0	1	0	0	0	0	0	0	0	16283	1305	45	3		3	TMEM38B	9	108510527	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1053286	108510527	32702904	611	151148											
SVEP1	79987	broad.mit.edu	37	chr9	113166498	113166498	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaatcctttgaaatgagtGaaaacttcagactttttttt	5	6	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113166498	A	A	113166498	1	1	189	0	1	0	0	0	0	0	0	0	15538	1305	45	4		4	SVEP1	9	113166498	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4655971	113166498	28046933	612	151149											
MUSK	4593	broad.mit.edu	37	chr9	113563055	113563055	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagatcttctcctatggCctgcagccctactatgggat	11	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113563055	A	A	113563055	2	1	189	1	0	0	0	0	0	0	0	1	10083	726	26	3		3	MUSK	9	113563055	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	396557	113563055	27650376	613	151150											
KIAA0368	23392	broad.mit.edu	37	chr9	114188022	114188022	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaatagttaaagacttaCgttatacaaatatgatgcac	5	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114188022	T	T	114188022	5	4	189	1	0	0	0	0	0	0	1	0	8241	550	19	4	4542	4	KIAA0368	9	114188022	Splice_Site	SNP	C	TCGA-64-5778-01A-01D-1625-08	624967	114188022	27025409	614	151151											
TNC	3371	broad.mit.edu	37	chr9	117844312	117844312	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcctctgttattctttcatCgattcattaggcacttacta	4	10	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117844312	T	T	117844312	1	4	189	0	1	0	0	0	0	0	0	0	16393	899	31	4		4	TNC	9	117844312	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3656290	117844312	23369119	615	151152											
PAPPA	5069	broad.mit.edu	37	chr9	119097407	119097407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtagccgagtggagacaGtgtgattttgaagctgggta	15	5	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119097407	T	T	119097407	1	4	189	0	1	0	0	0	0	0	0	0	11526	1044	36	3		3	PAPPA	9	119097407	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1253095	119097407	22116024	616	151153											
ASTN2	23245	broad.mit.edu	37	chr9	119858355	119858355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgactgcggtactgctccGtgtagaatgtcagctgagtt	14	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119858355	T	T	119858355	3	4	189	1	0	0	0	0	1	0	0	0	1069	1145	40	3	3083	3	ASTN2	9	119858355	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	760948	119858355	21355076	617	151154											
DAB2IP	153090	broad.mit.edu	37	chr9	124329462	124329462	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggggctgggggcccaCacgccatggagcccgactcc	16	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124329462	T	T	124329462	1	4	189	0	1	0	0	0	0	0	0	0	4252	493	17	4		4	DAB2IP	9	124329462	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	4471107	124329462	16883969	618	151155											
OR1N1	138883	broad.mit.edu	37	chr9	125288842	125288842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagaacacacaaacaacgCagaggtgggaactgcaggtg	12	9	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125288842	A	A	125288842	3	1	189	1	0	0	0	0	1	0	0	0	11063	710	25	3	208	3	OR1N1	9	125288842	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	959380	125288842	15924589	619	151156											
CRB2	286204	broad.mit.edu	37	chr9	126137497	126137497	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcccccctccctctccaggTgtcaggtccccactctcccc	6	23	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126137497	A	A	126137497	3	1	189	1	0	0	0	0	1	0	0	0	3881	1710	59	5	3554	5	CRB2	9	126137497	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	848655	126137497	15075934	620	151157											
MAPKAP1	79109	broad.mit.edu	37	chr9	128419837	128419837	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaactgatattctacaaagCatttctgaaaccctaaatct	3	10	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128419837	T	T	128419837	1	4	189	0	1	0	0	0	0	0	0	0	9380	725	25	4		4	MAPKAP1	9	128419837	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2282340	128419837	12793594	621	151158											
LMX1B	4010	broad.mit.edu	37	chr9	129376847	129376847	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccctgcgccccgggcccgCcactctgggggtgctgctgg	16	18	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129376847	A	A	129376847	3	1	189	1	0	0	0	0	1	0	0	0	8936	739	26	3	121	3	LMX1B	9	129376847	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	957010	129376847	11836584	622	151159											
SH2D3C	10044	broad.mit.edu	37	chr9	130540833	130540833	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcccagaggagagccaGggatggaggacagtgcagac	18	8	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130540833	T	T	130540833	1	4	189	0	1	0	0	0	0	0	0	0	14347	1015	35	2		2	SH2D3C	9	130540833	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1163986	130540833	10672598	623	151160											
CDK9	1025	broad.mit.edu	37	chr9	130550579	130550579	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactttgggctggcccgggcCttcagcctggccaagaacag	14	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130550579	T	T	130550579	2	4	189	1	0	0	0	0	0	0	0	1	3181	668	24	4		4	CDK9	9	130550579	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	9746	130550579	10662852	624	151161											
ZER1	10444	broad.mit.edu	37	chr9	131513849	131513849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtggcttgggacccaggCctgagctgggcctccccact	13	15	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131513849	A	A	131513849	1	1	189	0	1	0	0	0	0	0	0	0	17751	754	26	3		3	ZER1	9	131513849	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	963270	131513849	9699582	625	151162											
LRRC8A	56262	broad.mit.edu	37	chr9	131670679	131670679	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacctcaacaacgagtggacGctggacaagctccggcagcg	12	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131670679	C	C	131670679	2	2	189	1	0	0	0	0	0	0	0	1	9108	1074	38	4		4	LRRC8A	9	131670679	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	156830	131670679	9542752	626	151163											
CRAT	1384	broad.mit.edu	37	chr9	131864126	131864126	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccaacaggggaagaggccTgggtgtgcagccccagcacg	15	14	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131864126	A	A	131864126	1	1	189	0	1	0	0	0	0	0	0	0	3879	1595	55	5		5	CRAT	9	131864126	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	193447	131864126	9349305	627	151164											
NCS1	23413	broad.mit.edu	37	chr9	132988811	132988811	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagactcggggcctggggtgGgtctgggatgggtcaggggt	22	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132988811	C	C	132988811	1	2	189	0	1	0	0	0	0	0	0	0	10335	1247	43	4		4	NCS1	9	132988811	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1124685	132988811	8224620	628	151165											
FIBCD1	84929	broad.mit.edu	37	chr9	133779435	133779435	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggaccagcagggccaagGacaaggtgcaccagtctagc	14	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133779435	T	T	133779435	1	4	189	0	1	0	0	0	0	0	0	0	5941	1189	41	3		3	FIBCD1	9	133779435	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	790624	133779435	7433996	629	151166											
LAMC3	10319	broad.mit.edu	37	chr9	133911724	133911724	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccacgagtgtctgcgtgaGtgtctgagtgtcacagggca	15	10	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133911724	C	C	133911724	1	2	189	0	1	0	0	0	0	0	0	0	8688	1044	36	4		4	LAMC3	9	133911724	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	132289	133911724	7301707	630	151167											
LAMC3	10319	broad.mit.edu	37	chr9	133945244	133945244	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgaaggaggaggtgagtCggcccagacccactcacctt	14	11	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133945244	A	A	133945244	1	1	189	0	1	0	0	0	0	0	0	0	8688	899	31	3		3	LAMC3	9	133945244	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	33520	133945244	7268187	631	151168											
NUP214	8021	broad.mit.edu	37	chr9	134034830	134034830	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagatgtgaatgatgttctaGacttggagtgggatcagcat	13	4	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134034830	T	T	134034830	3	4	189	1	0	0	0	0	1	0	0	0	10857	942	33	3	2567	3	NUP214	9	134034830	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	89586	134034830	7178601	632	151169											
SURF6	6838	broad.mit.edu	37	chr9	136203044	136203044	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacctccgccggaaacCaccacacgggcaggcgcggc	11	19	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136203044	A	A	136203044	1	1	189	0	1	0	0	0	0	0	0	0	15524	609	21	2		2	SURF6	9	136203044	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	2168214	136203044	5010387	633	151170											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136403362	136403362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaggaaggagccctctgGgtcacgggtatcgggagatt	18	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136403362	T	T	136403362	1	4	189	0	1	0	0	0	0	0	0	0	275	1247	43	2		2	ADAMTSL2	9	136403362	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	200318	136403362	4810069	634	151171											
ADAMTSL2	9719	broad.mit.edu	37	chr9	136405802	136405802	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcagctcatggtccccgcCcgcgacggcacatcctgcaa	11	18	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136405802	A	A	136405802	2	1	189	1	0	0	0	0	0	0	0	1	275	610	22	2		2	ADAMTSL2	9	136405802	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	2440	136405802	4807629	635	151172											
VAV2	7410	broad.mit.edu	37	chr9	136633629	136633629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggctgtagatcctcaccaCgtcaccctcccgcagcgaaa	9	17	2	1	rs145738821		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136633629	A	A	136633629	3	1	189	1	0	0	0	0	1	0	0	0	17259	536	19	3	120	3	VAV2	9	136633629	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	227827	136633629	4579802	636	151173											
WDR5	11091	broad.mit.edu	37	chr9	137017125	137017125	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgcatctgggacaccgcctCaggccagtgcctgaagacgc	12	15	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137017125	T	T	137017125	3	4	189	1	0	0	0	0	1	0	0	0	17430	838	29	4	635	4	WDR5	9	137017125	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	383496	137017125	4196306	637	151174											
COL5A1	1289	broad.mit.edu	37	chr9	137676916	137676916	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcccaatggtgaccccGgtcctctgggaccccctggg	14	15	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137676916	C	C	137676916	3	2	189	1	0	0	0	0	1	0	0	0	3728	1116	39	4	2684	4	COL5A1	9	137676916	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	659791	137676916	3536515	638	151175											
KCNT1	57582	broad.mit.edu	37	chr9	138648833	138648833	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtccccaccctccccaccctCcccagcctcccccacctccc	2	30	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138648833	G	G	138648833	1	3	189	0	1	0	0	0	0	0	0	0	8161	870	30	4		4	KCNT1	9	138648833	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	971917	138648833	2564598	639	151176											
KCNT1	57582	broad.mit.edu	37	chr9	138676808	138676808	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacagcatccccaccttccGggggctgggactgtggcagc	13	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138676808	A	A	138676808	1	1	189	0	1	0	0	0	0	0	0	0	8161	1131	39	4		4	KCNT1	9	138676808	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	27975	138676808	2536623	640	151177											
CACNA1B	774	broad.mit.edu	37	chr9	140850264	140850264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagtggatcttcaaggcGggtgagggcccgtgggagcc	19	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140850264	T	T	140850264	2	4	189	1	0	0	0	0	0	0	0	1	2565	1130	39	1		1	CACNA1B	9	140850264	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	2173456	140850264	363167	641	151178											
IL2RA	3559	broad.mit.edu	37	chr10	6054679	6054679	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaggttgccactgccccGtgtcctgtgatgtgacttca	11	12	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6054679	T	T	6054679	1	4	189	0	1	0	0	0	0	0	0	0	7756	1160	40	3		3	IL2RA	10	6054679	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08		6054679	129480068	642	151179											
IL2RA	3559	broad.mit.edu	37	chr10	6104029	6104029	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagccttcccggaattccGggggcacccacaggccctta	10	16	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6104029	A	A	6104029	1	1	189	0	1	0	0	0	0	0	0	0	7756	1131	39	4		4	IL2RA	10	6104029	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	49350	6104029	129430718	643	151180											
SUV39H2	79723	broad.mit.edu	37	chr10	14939506	14939506	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgagttttgtcatggaatAtgttggagaggtatgtttca	12	2	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14939506	C	C	14939506	3	2	189	1	0	0	0	0	1	0	0	0	15531	449	16	5	661	5	SUV39H2	10	14939506	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	8835477	14939506	120595241	644	151181											
ITGA8	8516	broad.mit.edu	37	chr10	15573178	15573178	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaagtatttatttaaataTatttcatataaagtttttaa	2	1	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15573178	A	A	15573178	1	1	189	0	1	0	0	0	0	0	0	0	7952	1421	49	5		5	ITGA8	10	15573178	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	633672	15573178	119961569	645	151182											
ITGA8	8516	broad.mit.edu	37	chr10	15648218	15648218	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctggctttagtcttaaaGccatgagaacaacaccccag	9	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15648218	T	T	15648218	1	4	189	0	1	0	0	0	0	0	0	0	7952	986	34	3		3	ITGA8	10	15648218	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	75040	15648218	119886529	646	151183											
ITGA8	8516	broad.mit.edu	37	chr10	15655562	15655563	+	Intron	DNP	CT	TA	TA													agaaatgcaaaatctaggccCtaccccagacttactgaatc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	15655563	TA	TA	15655562	1	4	189	0	1	0	0	0	0	0	0	0	7952	696	24	4		4	ITGA8	10	15655562	Intron	DNP	CT	TCGA-64-5778-01A-01D-1625-08	7344	15655562	119879185	647	151184											
CUBN	8029	broad.mit.edu	37	chr10	16982167	16982167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcgtcccaccaagtgaccCgtggcatttccttcacggat	8	14	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16982167	A	A	16982167	2	1	189	1	0	0	0	0	0	0	0	1	4084	639	23	1		1	CUBN	10	16982167	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	1326605	16982167	118552580	648	151185											
FAM23A	653567	broad.mit.edu	37	chr10	17813266	17813266	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtaagaggaactgtcgatCttgtccatgattgctttggc	11	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17813266	A	A	17813266	1	1	189	0	1	0	0	0	0	0	0	0	5594	928	32	3		3	FAM23A	10	17813266	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	831099	17813266	117721481	649	151186											
MRC1	4360	broad.mit.edu	37	chr10	17891603	17891603	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgatgtgcctactcacTgtcctagtcagtggtggccg	12	10	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17891603	G	G	17891603	3	3	189	1	0	0	0	0	1	0	0	0	9850	1580	55	5	1110	5	MRC1	10	17891603	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	78337	17891603	117643144	650	151187											
DNAJC1	64215	broad.mit.edu	37	chr10	22207776	22207776	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtttgcatggaagcaaatCatgccactgtggtttcatca	9	9	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22207776	G	G	22207776	3	3	189	1	0	0	0	0	1	0	0	0	4668	826	29	4	1031	4	DNAJC1	10	22207776	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	4316173	22207776	113326971	651	151188											
SPAG6	9576	broad.mit.edu	37	chr10	22680714	22680714	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggaagatcatattaaggcTgcagctgcttgggccttagg	13	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22680714	A	A	22680714	2	1	189	1	0	0	0	0	0	0	0	1	15098	1567	55	5		5	SPAG6	10	22680714	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	472938	22680714	112854033	652	151189											
PIP4K2A	5305	broad.mit.edu	37	chr10	22880696	22880696	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgttggggaggggtgcgctCctggtcagggaattcttccc	16	10	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22880696	T	T	22880696	2	4	189	1	0	0	0	0	0	0	0	1	12031	854	30	4		4	PIP4K2A	10	22880696	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	199982	22880696	112654051	653	151190											
MYO3A	53904	broad.mit.edu	37	chr10	26482245	26482245	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattatctacttcatgtaaGtggctcactcttactatcag	5	10	5	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26482245	T	T	26482245	1	4	189	0	1	0	0	0	0	0	0	0	10170	1044	36	3		3	MYO3A	10	26482245	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3601549	26482245	109052502	654	151191											
ZNF25	219749	broad.mit.edu	37	chr10	38246347	38246347	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggggaagttttcctcaCccactgagacaaggtgacta	10	11	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38246347	A	A	38246347	5	1	189	1	0	0	0	0	0	0	1	0	17920	521	18	3	1243	3	ZNF25	10	38246347	Splice_Site	SNP	C	TCGA-64-5778-01A-01D-1625-08	11764102	38246347	97288400	655	151192											
BMS1	9790	broad.mit.edu	37	chr10	43292796	43292796	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttaactgttgaaaagctGcattgtggatggatctcaag	11	5	1	1	rs147764571	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43292796	C	C	43292796	1	2	189	0	1	0	0	0	0	0	0	0	1478	1334	46	4		4	BMS1	10	43292796	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	5046449	43292796	92241951	656	151193											
ZNF485	220992	broad.mit.edu	37	chr10	44112805	44112805	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cataataaagaaagagccatGaaatgtagttagtgtggcaa	10	4	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44112805	T	T	44112805	3	4	189	1	0	0	0	0	1	0	0	0	18065	1290	45	3	1328	3	ZNF485	10	44112805	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	820009	44112805	91421942	657	151194											
CXCL12	6387	broad.mit.edu	37	chr10	44873734	44873734	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcgttgatttaaaaaatgaGaatgagaatgatgatgattg	10	2	0	6			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44873734	T	T	44873734	1	4	189	0	1	0	0	0	0	0	0	0	4113	957	33	3		3	CXCL12	10	44873734	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	760929	44873734	90661013	658	151195											
C10orf72	196740	broad.mit.edu	37	chr10	50255081	50255081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtttatggaacgtgggggCtatcggagctgtggaagtag	18	5	0	0	rs149594660	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50255081	A	A	50255081	3	1	189	1	0	0	0	0	1	0	0	0	1626	797	28	3	186	3	C10orf72	10	50255081	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	5381347	50255081	85279666	659	151196											
PGBD3	267004	broad.mit.edu	37	chr10	50724060	50724060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacctgttgcctgatgtccCattgaactgagcttatcaag	9	10	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50724060	A	A	50724060	3	1	189	1	0	0	0	0	1	0	0	0	11877	594	21	2	684	2	PGBD3	10	50724060	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	468979	50724060	84810687	660	151197											
OGDHL	55753	broad.mit.edu	37	chr10	50943166	50943166	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgtctgttttatcctGgggccccacagcccctctcc	8	17	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50943166	T	T	50943166	1	4	189	0	1	0	0	0	0	0	0	0	10935	1363	47	2		2	OGDHL	10	50943166	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	219106	50943166	84591581	661	151198											
DDX50	79009	broad.mit.edu	37	chr10	70694664	70694664	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtcaactaagatatgtggAacaaaaagcagtaagtagag	11	4	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70694664	T	T	70694664	3	4	189	1	0	0	0	0	1	0	0	0	4401	246	9	5	1549	5	DDX50	10	70694664	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	19751498	70694664	64840083	662	151199											
H2AFY2	55506	broad.mit.edu	37	chr10	71851628	71851628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgatcctctccccaccccCagagaaaagaggcaggaagg	10	14	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71851628	A	A	71851628	3	1	189	1	0	0	0	0	1	0	0	0	6995	594	21	2	405	2	H2AFY2	10	71851628	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1156964	71851628	63683119	663	151200											
ASCC1	51008	broad.mit.edu	37	chr10	73949704	73949704	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaggtaagccaagacaagTgcacacaagtatatccagga	9	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73949704	A	A	73949704	1	1	189	0	1	0	0	0	0	0	0	0	1035	1711	59	5		5	ASCC1	10	73949704	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	2098076	73949704	61585043	664	151201											
OIT3	170392	broad.mit.edu	37	chr10	74678128	74678128	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcttcaacaatgtgcaattCgtcctttgcaccagccctta	6	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74678128	T	T	74678128	1	4	189	0	1	0	0	0	0	0	0	0	10944	899	31	4		4	OIT3	10	74678128	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	728424	74678128	60856619	665	151202											
KCNMA1	3778	broad.mit.edu	37	chr10	78646871	78646871	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggtggtgaaataaaaatgAcaaccacatgcacactatca	7	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78646871	T	T	78646871	1	4	189	0	1	0	0	0	0	0	0	0	8143	290	10	5		5	KCNMA1	10	78646871	3'UTR	SNP	A	TCGA-64-5778-01A-01D-1625-08	3968743	78646871	56887876	666	151203											
LDB3	11155	broad.mit.edu	37	chr10	88441349	88441349	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcactcgccgaggcctctGaccctggccctccgcgggcc	11	21	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88441349	T	T	88441349	3	4	189	1	0	0	0	0	1	0	0	0	8769	1290	45	3	492	3	LDB3	10	88441349	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	9794478	88441349	47093398	667	151204											
FAS	355	broad.mit.edu	37	chr10	90770502	90770502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatgtccaatgttccaAcctacaggatccagatctaa	5	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90770502	T	T	90770502	1	4	189	0	1	0	0	0	0	0	0	0	5738	58	2	5		5	FAS	10	90770502	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2329153	90770502	44764245	668	151205											
PLCE1	51196	broad.mit.edu	37	chr10	95791904	95791904	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggagttacatagatcagaaGagaaatggtcccttactgcc	10	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95791904	T	T	95791904	3	4	189	1	0	0	0	0	1	0	0	0	12129	933	33	3	1103	3	PLCE1	10	95791904	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5021402	95791904	39742843	669	151206											
ENTPD1	953	broad.mit.edu	37	chr10	97607405	97607405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaacaccagttactgccCttactcccagtgtgccttca	5	16	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97607405	A	A	97607405	3	1	189	1	0	0	0	0	1	0	0	0	5180	681	24	2	1139	2	ENTPD1	10	97607405	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1815501	97607405	37927342	670	151207											
DNTT	1791	broad.mit.edu	37	chr10	98092004	98092005	+	Intron	DNP	CC	AA	AA													atgcaaggccaaacacatgtCcatgttctgctcgaatctga							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	98092005	AA	AA	98092004	1	1	189	0	1	0	0	0	0	0	0	0	4720	870	30	3		3	DNTT	10	98092004	Intron	DNP	CC	TCGA-64-5778-01A-01D-1625-08	484599	98092004	37442743	671	151208											
ANKRD2	26287	broad.mit.edu	37	chr10	99338179	99338179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtcctggggaggacaccGcgagggggcggagggggagc	24	8	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99338179	A	A	99338179	1	1	189	0	1	0	0	0	0	0	0	0	647	1102	38	4		4	ANKRD2	10	99338179	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1246175	99338179	36196568	672	151209											
FBXW4	6468	broad.mit.edu	37	chr10	103384540	103384540	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggggtgagaagtgcccGcaacaagccgtccctgtcac	12	14	2	1	rs148535514		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103384540	A	A	103384540	2	1	189	1	0	0	0	0	0	0	0	1	5824	1079	38	4		4	FBXW4	10	103384540	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	4046361	103384540	32150207	673	151210											
MGEA5	10724	broad.mit.edu	37	chr10	103572981	103572981	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcatctccatctcatacaAagctaatattctatgacagt	5	10	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103572981	C	C	103572981	1	2	189	0	1	0	0	0	0	0	0	0	9648	29	1	5		5	MGEA5	10	103572981	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	188441	103572981	31961766	674	151211											
C10orf79	80217	broad.mit.edu	37	chr10	105902094	105902094	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgcaccttctcttcctcctCaactctcttctggaggaaag	6	14	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105902094	T	T	105902094	3	4	189	1	0	0	0	0	1	0	0	0	1629	835	29	4	805	4	C10orf79	10	105902094	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2329113	105902094	29632653	675	151212											
CCDC147	159686	broad.mit.edu	37	chr10	106118383	106118383	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attgcatccctaaagaaggtCagtgatcttctagaaatgga	9	7	3	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106118383	A	A	106118383	1	1	189	0	1	0	0	0	0	0	0	0	2807	841	29	3		3	CCDC147	10	106118383	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	216289	106118383	29416364	676	151213											
CCDC147	159686	broad.mit.edu	37	chr10	106207444	106207444	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatctctgctcctggttctGctctccactaggaaaaggag	9	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106207444	C	C	106207444	1	2	189	0	1	0	0	0	0	0	0	0	2807	1334	46	4		4	CCDC147	10	106207444	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	89061	106207444	29327303	677	151214											
PDCD4	27250	broad.mit.edu	37	chr10	112641277	112641277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagatctgggaaaggaagGggactaccaaagaaaggttg	14	6	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112641277	T	T	112641277	3	4	189	1	0	0	0	0	1	0	0	0	11715	1223	43	2	350	2	PDCD4	10	112641277	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	6433833	112641277	22893470	678	151215											
GRK5	2869	broad.mit.edu	37	chr10	121214575	121214575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgaactccaccggaagcaGctagtttcggctctggcctc	10	15	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121214575	T	T	121214575	3	4	189	1	0	0	0	0	1	0	0	0	6858	971	34	3	1831	3	GRK5	10	121214575	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	8573298	121214575	14320172	679	151216											
IFITM2	10581	broad.mit.edu	37	chr11	308136	308136	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgagaaaacggaactactGgggaaagggagggctcactg	16	6	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	308136	T	T	308136	1	4	189	0	1	0	0	0	0	0	0	0	7597	1363	47	2		2	IFITM2	11	308136	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08		308136	134698380	680	151217											
MUC5B	727897	broad.mit.edu	37	chr11	1272371	1272371	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccagctttacacccatccCctcctccaccctgtggacca	4	20	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1272371	T	T	1272371	1	4	189	0	1	0	0	0	0	0	0	0	10073	623	22	4		4	MUC5B	11	1272371	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	964235	1272371	133734145	681	151218											
BRSK2	9024	broad.mit.edu	37	chr11	1478277	1478277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtagcctctgacgctggCaggtaaggcgcccggcctgt	15	12	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1478277	A	A	1478277	1	1	189	0	1	0	0	0	0	0	0	0	1533	725	25	3		3	BRSK2	11	1478277	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	205906	1478277	133528239	682	151219											
TRPM5	29850	broad.mit.edu	37	chr11	2426087	2426087	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccctggggggttccgctgGaggtcggcaaaggtcagtgc	17	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2426087	T	T	2426087	1	4	189	0	1	0	0	0	0	0	0	0	16714	1189	41	3		3	TRPM5	11	2426087	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	947810	2426087	132580429	683	151220											
TRPM5	29850	broad.mit.edu	37	chr11	2432800	2432800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacgtcagcggccagccGggtggggcccaggcagggga	21	11	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2432800	T	T	2432800	1	4	189	0	1	0	0	0	0	0	0	0	16714	1131	39	1		1	TRPM5	11	2432800	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	6713	2432800	132573716	684	151221											
OSBPL5	114879	broad.mit.edu	37	chr11	3123481	3123481	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagcggaaggtctcccCcaggatggggttgtacggct	16	11	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3123481	G	G	3123481	3	3	189	1	0	0	0	0	1	0	0	0	11374	623	22	4	1326	4	OSBPL5	11	3123481	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	690681	3123481	131883035	685	151222											
OR52N4	390072	broad.mit.edu	37	chr11	5776568	5776568	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtcaaggtcaatgccatcTatggtctgatggttgccctc	10	10	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5776568	A	A	5776568	3	1	189	1	0	0	0	0	1	0	0	0	11223	1522	53	5	600	5	OR52N4	11	5776568	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	2653087	5776568	129229948	686	151223											
OR52N2	390077	broad.mit.edu	37	chr11	5841931	5841931	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctcatgctcatggccctGgaccgctatgtggccatctg	12	13	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5841931	T	T	5841931	2	4	189	1	0	0	0	0	0	0	0	1	11222	1335	47	2		2	OR52N2	11	5841931	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	65363	5841931	129164585	687	151224											
OR56A3	390083	broad.mit.edu	37	chr11	5968952	5968952	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatggtcatggcctatgatCgttatgtagccatctgccac	9	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5968952	A	A	5968952	3	1	189	1	0	0	0	0	1	0	0	0	11228	884	31	3	378	3	OR56A3	11	5968952	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	127021	5968952	129037564	688	151225											
OR10A4	283297	broad.mit.edu	37	chr11	6898490	6898490	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaggctctgacagccacTgtcctattcattctctttcc	7	14	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6898490	G	G	6898490	2	3	189	1	0	0	0	0	0	0	0	1	10986	1567	55	5		5	OR10A4	11	6898490	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	929538	6898490	128108026	689	151226											
IPO7	10527	broad.mit.edu	37	chr11	9459724	9459724	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtttctggacagattttgCcggcttttatccttttattt	8	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9459724	T	T	9459724	3	4	189	1	0	0	0	0	1	0	0	0	7867	739	26	4	2673	4	IPO7	11	9459724	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2561234	9459724	125546792	690	151227											
INSC	387755	broad.mit.edu	37	chr11	15260439	15260439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccatgctggggtaggtaCcaactgttccttgcttcctg	11	12	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15260439	A	A	15260439	1	1	189	0	1	0	0	0	0	0	0	0	7834	522	18	3		3	INSC	11	15260439	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	5800715	15260439	119746077	691	151228											
MYOD1	4654	broad.mit.edu	37	chr11	17742882	17742882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcatctccaccgagagcCctgcggcgcccgccctcctg	11	20	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17742882	A	A	17742882	3	1	189	1	0	0	0	0	1	0	0	0	10182	623	22	2	800	2	MYOD1	11	17742882	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2482443	17742882	117263634	692	151229											
MRGPRX1	259249	broad.mit.edu	37	chr11	18955987	18955987	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagcgctcggtgctcacGgcactcagaaagctcaggcc	13	14	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18955987	A	A	18955987	2	1	189	1	0	0	0	0	0	0	0	1	9860	1103	39	4		4	MRGPRX1	11	18955987	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	1213105	18955987	116050529	693	151230											
MRGPRX1	259249	broad.mit.edu	37	chr11	18956058	18956058	+	Frame_Shift_Del	DEL	G	-	-													gaggattttagagatggtatGggggatactgatgaagctta							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18956058	-	-	18956058	7	5	189	1	0	1	0	1	0	0	0	0	9860	1348	47	0	698	0	MRGPRX1	11	18956058	Frame_Shift_Del	DEL	G	TCGA-64-5778-01A-01D-1625-08	71	18956058	116050458	694	151231											
TRAF6	7189	broad.mit.edu	37	chr11	36511949	36511949	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaactttgtcctcaagGgttcgaatggttcgtttgag	11	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36511949	A	A	36511949	2	1	189	1	0	0	0	0	0	0	0	1	16569	1219	43	4		4	TRAF6	11	36511949	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	17555891	36511949	98494567	695	151232											
RAG1	5896	broad.mit.edu	37	chr11	36598063	36598063	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagggcttctcctagcaccCtttactgctgtgtatggggc	12	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36598063	T	T	36598063	1	4	189	0	1	0	0	0	0	0	0	0	13111	696	24	4		4	RAG1	11	36598063	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	86114	36598063	98408453	696	151233											
ALKBH3	221120	broad.mit.edu	37	chr11	43918971	43918971	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaatgattatccttggcaaGacaggtgtgaaaggattgct	11	5	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43918971	T	T	43918971	1	4	189	0	1	0	0	0	0	0	0	0	528	957	33	3		3	ALKBH3	11	43918971	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	7320908	43918971	91087545	697	151234											
F2	2147	broad.mit.edu	37	chr11	46744801	46744801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggtcaggcattgagtgcCagctatggaggagtcgctac	14	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46744801	A	A	46744801	3	1	189	1	0	0	0	0	1	0	0	0	5385	595	21	2	406	2	F2	11	46744801	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2825830	46744801	88261715	698	151235											
CKAP5	9793	broad.mit.edu	37	chr11	46772905	46772905	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttactcaccttgggcccTtttaatttgcataaggtgtg	8	9	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46772905	C	C	46772905	2	2	189	1	0	0	0	0	0	0	0	1	3476	1606	56	5		5	CKAP5	11	46772905	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	28104	46772905	88233611	699	151236											
NR1H3	10062	broad.mit.edu	37	chr11	47282972	47282972	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaacagtgtaaccggcGctccttttctgaccggcttc	9	15	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47282972	T	T	47282972	3	4	189	1	0	0	0	0	1	0	0	0	10713	1087	38	3	694	3	NR1H3	11	47282972	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	510067	47282972	87723544	700	151237											
CELF1	10658	broad.mit.edu	37	chr11	47506016	47506016	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaagagaacatgactcggaTgtcattttcagtgcacttct	9	9	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47506016	C	C	47506016	3	2	189	1	0	0	0	0	1	0	0	0	3245	1464	51	5	1129	5	CELF1	11	47506016	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	223044	47506016	87500500	701	151238											
AGBL2	79841	broad.mit.edu	37	chr11	47712103	47712103	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaagaagcaagtgtcctggtCatatggaaactgaatggtcc	11	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47712103	T	T	47712103	3	4	189	1	0	0	0	0	1	0	0	0	376	826	29	4	1592	4	AGBL2	11	47712103	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	206087	47712103	87294413	702	151239											
OR4C46	119749	broad.mit.edu	37	chr11	51516184	51516184	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatcaggaaattgtgtagTagaaaggacatttcaggtga	12	5	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51516184	C	C	51516184	2	2	189	1	0	0	0	0	0	0	0	1	11145	1635	57	5		5	OR4C46	11	51516184	Silent	SNP	T	TCGA-64-5778-01A-01D-1625-08	3804081	51516184	83490332	703	151240											
OR5D14	219436	broad.mit.edu	37	chr11	55563359	55563359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcctgtcctgcactgctGtggtgacagagtctttcttg	10	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563359	T	T	55563359	3	4	189	1	0	0	0	0	1	0	0	0	11249	1377	48	3	330	3	OR5D14	11	55563359	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4047175	55563359	79443157	704	151241											
SPRYD5	84767	broad.mit.edu	37	chr11	55653320	55653320	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgaggaacgccgggtaaGtgatgcctctgaagatctat	13	8	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55653320	C	C	55653320	1	2	189	0	1	0	0	0	0	0	0	0	15229	1044	36	4		4	SPRYD5	11	55653320	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	89961	55653320	79353196	705	151242											
OR8H2	390151	broad.mit.edu	37	chr11	55873241	55873241	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaagctttctctacttgCgtctctcatctcttgggagt	8	11	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55873241	A	A	55873241	4	1	189	1	0	0	0	0	0	1	0	0	11332	776	27	3	725	3	OR8H2	11	55873241	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	219921	55873241	79133275	706	151243											
OR8J3	81168	broad.mit.edu	37	chr11	55904269	55904269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgatttaaaggagtaaCatggattttccatgaatttc	7	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55904269	A	A	55904269	3	1	189	1	0	0	0	0	1	0	0	0	11336	478	17	3	23	3	OR8J3	11	55904269	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	31028	55904269	79102247	707	151244											
OR5T3	390154	broad.mit.edu	37	chr11	56020158	56020158	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatctacaaccctctcctGtattcagtgagcatgtcacc	6	15	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020158	A	A	56020158	2	1	189	1	0	0	0	0	0	0	0	1	11277	1364	48	4		4	OR5T3	11	56020158	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	115889	56020158	78986358	708	151245											
EHD1	10938	broad.mit.edu	37	chr11	64622062	64622062	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacagcgtgtagaagatctCgtcgtaggtgggcttgtcct	15	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64622062	T	T	64622062	3	4	189	1	0	0	0	0	1	0	0	0	5017	893	31	4	260	4	EHD1	11	64622062	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	8601904	64622062	70384454	709	151246											
MAP3K11	4296	broad.mit.edu	37	chr11	65375703	65375703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctctgccctctgcagccCcgtagcagcccgtccagccc	8	22	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65375703	T	T	65375703	1	4	189	0	1	0	0	0	0	0	0	0	9337	638	22	4		4	MAP3K11	11	65375703	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	753641	65375703	69630813	710	151247											
RHOD	29984	broad.mit.edu	37	chr11	66833438	66833438	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaacctgtgcacctccaCatctgggacacagcaggtgg	12	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66833438	T	T	66833438	2	4	189	1	0	0	0	0	0	0	0	1	13446	477	17	4		4	RHOD	11	66833438	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	1457735	66833438	68173078	711	151248											
GSTP1	2950	broad.mit.edu	37	chr11	67353590	67353590	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcaggaggcgggcaaggatGactatgtgaaggcactgccc	17	9	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67353590	T	T	67353590	3	4	189	1	0	0	0	0	1	0	0	0	6910	1290	45	3	374	3	GSTP1	11	67353590	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	520152	67353590	67652926	712	151249											
FAT3	120114	broad.mit.edu	37	chr11	92086338	92086338	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaagacaagggatctcctCaaaaatgttcagcattaaag	7	8	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92086338	A	A	92086338	3	1	189	1	0	0	0	0	1	0	0	0	5748	827	29	3	1062	3	FAT3	11	92086338	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	24732748	92086338	42920178	713	151250											
PANX1	24145	broad.mit.edu	37	chr11	93912816	93912816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacccaattgtggagcaGtacttgaagacaaagaaaaa	9	6	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93912816	T	T	93912816	3	4	189	1	0	0	0	0	1	0	0	0	11514	1020	36	3	608	3	PANX1	11	93912816	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1826478	93912816	41093700	714	151251											
MMP10	4319	broad.mit.edu	37	chr11	102647152	102647152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagtagaggcagggggaGgtcctaaaggaaacagattt	14	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102647152	T	T	102647152	3	4	189	1	0	0	0	0	1	0	0	0	9742	1000	35	2	659	2	MMP10	11	102647152	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	8734336	102647152	32359364	715	151252											
NCAM1	4684	broad.mit.edu	37	chr11	113130863	113130863	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttgccggtttctcccAgaagctctcctccgagtgga	9	15	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113130863	G	G	113130863	1	3	189	0	1	0	0	0	0	0	0	0	10297	203	7	5		5	NCAM1	11	113130863	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	10483711	113130863	21875653	716	151253											
TTC12	54970	broad.mit.edu	37	chr11	113205804	113205804	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacatgtttgatcacagactGatgctcccagttgtgctaga	10	9	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113205804	A	A	113205804	1	1	189	0	1	0	0	0	0	0	0	0	16805	1305	45	4		4	TTC12	11	113205804	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	74941	113205804	21800712	717	151254											
ZW10	9183	broad.mit.edu	37	chr11	113618860	113618860	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggaatttgtctctattcCttattaataatttacttaaa	3	5	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113618860	A	A	113618860	1	1	189	0	1	0	0	0	0	0	0	0	18376	696	24	2		2	ZW10	11	113618860	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	413056	113618860	21387656	718	151255											
DSCAML1	57453	broad.mit.edu	37	chr11	117392117	117392117	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcagggtcacatgaaggGgatctgggccgggccaggga	19	8	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117392117	A	A	117392117	3	1	189	1	0	0	0	0	1	0	0	0	4809	1232	43	4	5332	4	DSCAML1	11	117392117	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3773257	117392117	17614399	719	151256											
IQSEC3	440073	broad.mit.edu	37	chr12	176419	176419	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacagctcctggagcagcCccagcggggccctggcagca	15	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176419	T	T	176419	1	4	189	0	1	0	0	0	0	0	0	0	7889	623	22	4		4	IQSEC3	12	176419	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08		176419	133675476	720	151257											
PTMS	5763	broad.mit.edu	37	chr12	6878942	6878942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagggtgctgggtcctgccGttcccctgagccctgtcacc	13	16	1	1	rs144752841	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6878942	T	T	6878942	1	4	189	0	1	0	0	0	0	0	0	0	12873	1160	40	3		3	PTMS	12	6878942	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	6702523	6878942	126972953	721	151258											
PIK3C2G	5288	broad.mit.edu	37	chr12	18719923	18719923	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccttttacaaattcagatCacagaagattcagagatcta	5	8	4	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18719923	T	T	18719923	3	4	189	1	0	0	0	0	1	0	0	0	12006	826	29	4	3926	4	PIK3C2G	12	18719923	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	11840981	18719923	115131972	722	151259											
SLCO1C1	53919	broad.mit.edu	37	chr12	20870080	20870080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagggtgtgtgcagacgGttgcaattataggaccaatc	14	7	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20870080	T	T	20870080	3	4	189	1	0	0	0	0	1	0	0	0	14839	1261	44	3	713	3	SLCO1C1	12	20870080	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2150157	20870080	112981815	723	151260											
SLCO1C1	53919	broad.mit.edu	37	chr12	20896250	20896250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattttaggtgcattaagcCacagcttaagtcttttgcct	8	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20896250	A	A	20896250	3	1	189	1	0	0	0	0	1	0	0	0	14839	594	21	2	1791	2	SLCO1C1	12	20896250	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	26170	20896250	112955645	724	151261											
C12orf77	196415	broad.mit.edu	37	chr12	25148752	25148752	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaccccacctgcagtatatCcccaacaggaatctccatct	5	16	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25148752	T	T	25148752	2	4	189	1	0	0	0	0	0	0	0	1	1729	842	30	4		4	C12orf77	12	25148752	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	4252502	25148752	108703143	725	151262											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	189	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	249533	25398285	108453610	726	151263											
ERGIC2	51290	broad.mit.edu	37	chr12	29521239	29521239	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgaaagacaaaatattaAacattagtacctaccaatta	4	7	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29521239	T	T	29521239	1	4	189	0	1	0	0	0	0	0	0	0	5266	29	1	5		5	ERGIC2	12	29521239	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	4122954	29521239	104330656	727	151264											
CAPRIN2	65981	broad.mit.edu	37	chr12	30888281	30888281	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actaccagtttagtctgtctCctttttgagctaaagaagtc	7	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30888281	A	A	30888281	1	1	189	0	1	0	0	0	0	0	0	0	2662	870	30	3		3	CAPRIN2	12	30888281	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1367042	30888281	102963614	728	151265											
ADAMTS20	80070	broad.mit.edu	37	chr12	43858522	43858522	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtttgtcaagaagacattCcccgtaaccagtactgtaac	8	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43858522	A	A	43858522	4	1	189	1	0	0	0	0	0	1	0	0	266	864	30	3	4470	3	ADAMTS20	12	43858522	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	12970241	43858522	89993373	729	151266											
NELL2	4753	broad.mit.edu	37	chr12	45171160	45171160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccaaattatgttcaatgGtcaagttcatgaaggaaaat	7	6	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45171160	T	T	45171160	1	4	189	0	1	0	0	0	0	0	0	0	10429	1276	44	3		3	NELL2	12	45171160	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1312638	45171160	88680735	730	151267											
SFRS2IP	9169	broad.mit.edu	37	chr12	46342248	46342248	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttttagaattttcatgacAggagacctgtttctcaaatg	8	7	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46342248	C	C	46342248	3	2	189	1	0	0	0	0	1	0	0	0	14290	188	7	5	4065	5	SFRS2IP	12	46342248	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	1171088	46342248	87509647	731	151268											
PRPF40B	25766	broad.mit.edu	37	chr12	50037160	50037160	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggaggacggggctccccttCctcccatcttcttggagcag	12	14	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50037160	T	T	50037160	3	4	189	1	0	0	0	0	1	0	0	0	12678	855	30	4	2383	4	PRPF40B	12	50037160	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3694912	50037160	83814735	732	151269											
KRT71	112802	broad.mit.edu	37	chr12	52941958	52941958	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtctggtacagggcctcaGcctcggccttactcttcaag	11	13	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52941958	T	T	52941958	3	4	189	1	0	0	0	0	1	0	0	0	8555	971	34	3	635	3	KRT71	12	52941958	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2904798	52941958	80909937	733	151270											
AAAS	8086	broad.mit.edu	37	chr12	53715373	53715373	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaccgcaagggacaaacggCgaggcggaactcaacggaag	15	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53715373	G	G	53715373	1	3	189	0	1	0	0	0	0	0	0	0	8	783	27	4		4	AAAS	12	53715373	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	773415	53715373	80136522	734	151271											
HOXC13	3229	broad.mit.edu	37	chr12	54338921	54338921	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaaagagaagcgccggCgcatctccgccaccacgaac	9	17	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54338921	G	G	54338921	3	3	189	1	0	0	0	0	1	0	0	0	7379	768	27	4	880	4	HOXC13	12	54338921	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	623548	54338921	79512974	735	151272											
KIAA0748	9840	broad.mit.edu	37	chr12	55356106	55356106	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagtggtatatctggctagGacaggaagcctggattattt	12	5	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55356106	T	T	55356106	1	4	189	0	1	0	0	0	0	0	0	0	8260	1189	41	3		3	KIAA0748	12	55356106	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1017185	55356106	78495789	736	151273											
B4GALNT1	2583	broad.mit.edu	37	chr12	58024791	58024791	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagatgctcctgaggggctgAacttccacaccctgtagggg	13	11	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58024791	T	T	58024791	2	4	189	1	0	0	0	0	0	0	0	1	1271	233	9	5		5	B4GALNT1	12	58024791	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	2668685	58024791	75827104	737	151274											
BEST3	144453	broad.mit.edu	37	chr12	70049458	70049458	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttgtctgcctcctgtaGcttcttcttctggggctgga	10	12	5	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70049458	T	T	70049458	3	4	189	1	0	0	0	0	1	0	0	0	1411	962	34	3	774	3	BEST3	12	70049458	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	12024667	70049458	63802437	738	151275											
BEST3	144453	broad.mit.edu	37	chr12	70070561	70070561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctggcagaaaagtaataaCattgctgagccattacatgt	8	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70070561	A	A	70070561	1	1	189	0	1	0	0	0	0	0	0	0	1411	493	17	3		3	BEST3	12	70070561	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	21103	70070561	63781334	739	151276											
TSPAN8	7103	broad.mit.edu	37	chr12	71833786	71833786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccacggagcggcgcccGgcgcgccacggcccgtagca	15	18	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71833786	T	T	71833786	1	4	189	0	1	0	0	0	0	0	0	0	16778	1131	39	1		1	TSPAN8	12	71833786	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1763225	71833786	62018109	740	151277											
TRHDE	29953	broad.mit.edu	37	chr12	73056892	73056892	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttctttctcacgagctgtgGaaactgtcgaagccaatgtg	10	10	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73056892	C	C	73056892	3	2	189	1	0	0	0	0	1	0	0	0	16603	1175	41	4	3066	4	TRHDE	12	73056892	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1223106	73056892	60795003	741	151278											
DCN	1634	broad.mit.edu	37	chr12	91539908	91539908	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatggctgtatctcccagTactggaccgggttgctgaaa	13	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91539908	A	A	91539908	3	1	189	1	0	0	0	0	1	0	0	0	4330	1638	57	5	76	5	DCN	12	91539908	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	18483016	91539908	42311987	742	151279											
NT5DC3	51559	broad.mit.edu	37	chr12	104190758	104190758	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggacaggagggtcatctCgggcagggagaagatgtcca	17	8	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104190758	A	A	104190758	4	1	189	1	0	0	0	0	0	1	0	0	10787	893	31	3	1015	3	NT5DC3	12	104190758	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	12650850	104190758	29661137	743	151280											
RFX4	5992	broad.mit.edu	37	chr12	107075931	107075931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagctctgtctgcaggcCtggcagaagtctgtgcctag	13	12	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107075931	A	A	107075931	1	1	189	0	1	0	0	0	0	0	0	0	13373	696	24	2		2	RFX4	12	107075931	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2885173	107075931	26775964	744	151281											
WSCD2	9671	broad.mit.edu	37	chr12	108626745	108626745	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccccacttggagggtatggGaatactcctccttgagtatc	10	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108626745	T	T	108626745	1	4	189	0	1	0	0	0	0	0	0	0	17534	1189	41	3		3	WSCD2	12	108626745	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1550814	108626745	25225150	745	151282											
MAPKAPK5	8550	broad.mit.edu	37	chr12	112323739	112323739	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctcctgaaggtcaaaccgGaggagagactcaccatcgag	13	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112323739	T	T	112323739	4	4	189	1	0	0	0	0	0	1	0	0	9383	1175	41	3	906	3	MAPKAPK5	12	112323739	Nonsense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3696994	112323739	21528156	746	151283											
C12orf51	283450	broad.mit.edu	37	chr12	112646278	112646278	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgctgctgagtcctgatcTaagcctgtgggtctcttacc	10	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112646278	C	C	112646278	1	2	189	0	1	0	0	0	0	0	0	0	1709	1537	53	5		5	C12orf51	12	112646278	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	322539	112646278	21205617	747	151284											
LHX5	64211	broad.mit.edu	37	chr12	113909036	113909036	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaagcttgtgatccggggaGgctgggatggggatgggggt	21	5	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113909036	A	A	113909036	1	1	189	0	1	0	0	0	0	0	0	0	8846	1015	35	4		4	LHX5	12	113909036	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1262758	113909036	19942859	748	151285											
MED13L	23389	broad.mit.edu	37	chr12	116410113	116410113	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagatttgagctttttagcAgttctgcccggtaattgaat	11	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116410113	T	T	116410113	1	4	189	0	1	0	0	0	0	0	0	0	9524	203	7	5		5	MED13L	12	116410113	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	2501077	116410113	17441782	749	151286											
DNAH10	196385	broad.mit.edu	37	chr12	124349060	124349060	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctgggaaaaagacattcAacatgaatgggcaggttata	10	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124349060	G	G	124349060	1	3	189	0	1	0	0	0	0	0	0	0	4638	145	5	5		5	DNAH10	12	124349060	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	7938947	124349060	9502835	750	151287											
AACS	65985	broad.mit.edu	37	chr12	125571021	125571021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgctggtgatggtttgaGggaggagaccaaggtagaat	19	3	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125571021	T	T	125571021	1	4	189	0	1	0	0	0	0	0	0	0	9	1015	35	2		2	AACS	12	125571021	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1221961	125571021	8280874	751	151288											
SLC15A4	121260	broad.mit.edu	37	chr12	129293587	129293587	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacgtctcaatgggagaaaTgcacgtaaagaacagttcct	9	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129293587	A	A	129293587	1	1	189	0	1	0	0	0	0	0	0	0	14514	1479	51	5		5	SLC15A4	12	129293587	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	3722566	129293587	4558308	752	151289											
FAM123A	219287	broad.mit.edu	37	chr13	25744194	25744194	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtggagtcccagtagccctCgtcgctgttggggacgcctt	15	12	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25744194	A	A	25744194	4	1	189	1	0	0	0	0	0	1	0	0	5468	893	31	3	455	3	FAM123A	13	25744194	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08		25744194	89425684	753	151290											
GPR12	2835	broad.mit.edu	37	chr13	27333191	27333191	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atccagcaagcagcaaacgtCcccaggatgatagccagggt	11	12	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27333191	A	A	27333191	2	1	189	1	0	0	0	0	0	0	0	1	6700	842	30	3		3	GPR12	13	27333191	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	1588997	27333191	87836687	754	151291											
POLR1D	51082	broad.mit.edu	37	chr13	28240074	28240074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacaagtacgaaaagcGgtccaaccggcggtgaggct	14	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28240074	T	T	28240074	3	4	189	1	0	0	0	0	1	0	0	0	12307	1116	39	1	743	1	POLR1D	13	28240074	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	906883	28240074	86929804	755	151292											
FLT1	2321	broad.mit.edu	37	chr13	29012523	29012523	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatatatacataaatgaTtgacatgcaagcatctagac	5	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29012523	A	A	29012523	1	1	189	0	1	0	0	0	0	0	0	0	5999	1508	52	5		5	FLT1	13	29012523	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	772449	29012523	86157355	756	151293											
TRPC4	7223	broad.mit.edu	37	chr13	38225483	38225483	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atccatttgatcaggtaccaGagagacttggggctcgggat	13	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38225483	A	A	38225483	2	1	189	1	0	0	0	0	0	0	0	1	16705	929	33	4		4	TRPC4	13	38225483	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	9212960	38225483	76944395	757	151294											
DACH1	1602	broad.mit.edu	37	chr13	72049302	72049302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttcagcatctgttctgCcgccactgcggtcagcctct	8	16	5	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72049302	A	A	72049302	3	1	189	1	0	0	0	0	1	0	0	0	4253	739	26	3	74	3	DACH1	13	72049302	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	33823819	72049302	43120576	758	151295											
DACH1	1602	broad.mit.edu	37	chr13	72146989	72146989	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taccttaataactgatgtctCaactctggatgggggactct	9	9	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72146989	G	G	72146989	3	3	189	1	0	0	0	0	1	0	0	0	4253	835	29	4	870	4	DACH1	13	72146989	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	97687	72146989	43022889	759	151296											
SLAIN1	122060	broad.mit.edu	37	chr13	78337494	78337494	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tactgcattgtttctcaatgGaccagtcaccagagactaat	7	10	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78337494	T	T	78337494	1	4	189	0	1	0	0	0	0	0	0	0	14478	1189	41	3		3	SLAIN1	13	78337494	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	6190505	78337494	36832384	760	151297											
NDFIP2	54602	broad.mit.edu	37	chr13	80122303	80122303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaaataatttatatatGtgtatgctgtgtatgccatt	6	5	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80122303	T	T	80122303	1	4	189	0	1	0	0	0	0	0	0	0	10341	1392	48	3		3	NDFIP2	13	80122303	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1784809	80122303	35047575	761	151298											
STK24	8428	broad.mit.edu	37	chr13	99127110	99127110	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgactgtttgatgacctcggGtgccatccagaatggggtgc	14	10	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99127110	A	A	99127110	3	1	189	1	0	0	0	0	1	0	0	0	15411	1261	44	4	761	4	STK24	13	99127110	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	19004807	99127110	16042768	762	151299											
FGF14	2259	broad.mit.edu	37	chr13	102454432	102454432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatggcaaaggcagaaaaaGtaggttcggatggggaaatg	15	3	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102454432	T	T	102454432	1	4	189	0	1	0	0	0	0	0	0	0	5900	1044	36	3		3	FGF14	13	102454432	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3327322	102454432	12715446	763	151300											
KDELC1	79070	broad.mit.edu	37	chr13	103443386	103443386	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagtttaaccagctcgagTctctctttgcggctgtctcg	10	12	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103443386	A	A	103443386	3	1	189	1	0	0	0	0	1	0	0	0	8187	1664	58	5	580	5	KDELC1	13	103443386	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	988954	103443386	11726492	764	151301											
SLC10A2	6555	broad.mit.edu	37	chr13	103718307	103718307	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctataatgagcaccactAcggcctggagcgggaggatg	13	10	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103718307	G	G	103718307	3	3	189	1	0	0	0	0	1	0	0	0	14487	391	14	5	777	5	SLC10A2	13	103718307	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	274921	103718307	11451571	765	151302											
MYO16	23026	broad.mit.edu	37	chr13	109318301	109318301	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagtgcttgctagagtcCcttccccttggccaacggca	10	15	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109318301	A	A	109318301	2	1	189	1	0	0	0	0	0	0	0	1	10158	610	22	2		2	MYO16	13	109318301	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	5599994	109318301	5851577	766	151303											
MYO16	23026	broad.mit.edu	37	chr13	109613918	109613918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgttcgtaattctagcagCaatattgcaccttggagaca	8	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109613918	A	A	109613918	3	1	189	1	0	0	0	0	1	0	0	0	10158	710	25	3	2069	3	MYO16	13	109613918	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	295617	109613918	5555960	767	151304											
ATP11A	23250	broad.mit.edu	37	chr13	113536077	113536077	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtggctcaggtcaccccaGgcagccccgtgggtatccct	13	15	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113536077	T	T	113536077	1	4	189	0	1	0	0	0	0	0	0	0	1123	1015	35	2		2	ATP11A	13	113536077	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3922159	113536077	1633801	768	151305											
MCF2L	23263	broad.mit.edu	37	chr13	113741978	113741978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaaaacaaggcagtggGttcactgtgcacgcgaaccc	10	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113741978	T	T	113741978	1	4	189	0	1	0	0	0	0	0	0	0	9472	1276	44	3		3	MCF2L	13	113741978	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	205901	113741978	1427900	769	151306											
OR4Q3	441669	broad.mit.edu	37	chr14	20215940	20215940	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagatgtttttgctgacagtCatggcctatgacaggtatgt	12	6	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20215940	A	A	20215940	2	1	189	1	0	0	0	0	0	0	0	1	11175	813	29	3		3	OR4Q3	14	20215940	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08		20215940	87133600	770	151307											
OR4N2	390429	broad.mit.edu	37	chr14	20295622	20295622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaatggaaagcgagaaCagaacagtgataagagaatt	13	3	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20295622	A	A	20295622	3	1	189	1	0	0	0	0	1	0	0	0	11171	477	17	3	17	3	OR4N2	14	20295622	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	79682	20295622	87053918	771	151308											
OR11G2	390439	broad.mit.edu	37	chr14	20666456	20666456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttattctgttgttacccCactgcttaaccctgtgatat	6	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20666456	A	A	20666456	3	1	189	1	0	0	0	0	1	0	0	0	11019	594	21	2	964	2	OR11G2	14	20666456	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	370834	20666456	86683084	772	151309											
OR11H6	122748	broad.mit.edu	37	chr14	20692663	20692663	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggtcccacctaatggtGgtgtctctattctatggaac	11	9	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20692663	C	C	20692663	2	2	189	1	0	0	0	0	0	0	0	1	11023	1335	47	4		4	OR11H6	14	20692663	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	26207	20692663	86656877	773	151310											
RNASE3	6037	broad.mit.edu	37	chr14	21359949	21359949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccacagtttacgagggCtcagtggtttgccatccagc	10	14	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21359949	A	A	21359949	3	1	189	1	0	0	0	0	1	0	0	0	13516	797	28	3	106	3	RNASE3	14	21359949	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	667286	21359949	85989591	774	151311											
RPGRIP1	57096	broad.mit.edu	37	chr14	21795831	21795831	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacccaacggatctattcaAgtgcaactggattggaagtt	9	8	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21795831	T	T	21795831	3	4	189	1	0	0	0	0	1	0	0	0	13660	69	3	5	2826	5	RPGRIP1	14	21795831	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	435882	21795831	85553709	775	151312											
EFS	10278	broad.mit.edu	37	chr14	23828659	23828659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctccataaccaggcaggCggggtgggggtgggggcaga	21	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23828659	A	A	23828659	3	1	189	1	0	0	0	0	1	0	0	0	4999	768	27	3	669	3	EFS	14	23828659	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2032828	23828659	83520881	776	151313											
MYH7	4625	broad.mit.edu	37	chr14	23884706	23884706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcttctggttgatgaGgctggtgttctgggttgggg	16	6	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23884706	T	T	23884706	3	4	189	1	0	0	0	0	1	0	0	0	10133	1000	35	2	660	2	MYH7	14	23884706	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	56047	23884706	83464834	777	151314											
MYH7	4625	broad.mit.edu	37	chr14	23887108	23887108	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccctggcccagcctctGcgctatggacattgaggagg	13	13	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23887108	T	T	23887108	1	4	189	0	1	0	0	0	0	0	0	0	10133	1334	46	3		3	MYH7	14	23887108	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	2402	23887108	83462432	778	151315											
MYH7	4625	broad.mit.edu	37	chr14	23900213	23900213	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatttttccagaagatctgtGaacaggtggggagaagaagg	15	4	1	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23900213	T	T	23900213	1	4	189	0	1	0	0	0	0	0	0	0	10133	1305	45	3		3	MYH7	14	23900213	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	13105	23900213	83449327	779	151316											
FOXG1	2290	broad.mit.edu	37	chr14	29237064	29237064	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgcgctcatcatgatggcCatccggcagagccccgagaa	11	14	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29237064	G	G	29237064	2	3	189	1	0	0	0	0	0	0	0	1	6067	581	21	4		4	FOXG1	14	29237064	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	5336851	29237064	78112476	780	151317											
FOXG1	2290	broad.mit.edu	37	chr14	29237494	29237494	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtcggcctaccccagcCaccccatgccctacagctcc	6	23	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29237494	A	A	29237494	3	1	189	1	0	0	0	0	1	0	0	0	6067	594	21	2	1011	2	FOXG1	14	29237494	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	430	29237494	78112046	781	151318											
STRN3	29966	broad.mit.edu	37	chr14	31420029	31420029	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtataagcactttcatacCtagatccttaaagaaggttg	7	8	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31420029	A	A	31420029	1	1	189	0	1	0	0	0	0	0	0	0	15448	696	24	2		2	STRN3	14	31420029	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2182535	31420029	75929511	782	151319											
INSM2	84684	broad.mit.edu	37	chr14	36005243	36005243	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggctttcttcaacttgcAagtttactttcattccttcc	6	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36005243	G	G	36005243	1	3	189	0	1	0	0	0	0	0	0	0	7842	145	5	5		5	INSM2	14	36005243	3'UTR	SNP	A	TCGA-64-5778-01A-01D-1625-08	4585214	36005243	71344297	783	151320											
RPL10L	140801	broad.mit.edu	37	chr14	47120456	47120456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatatgaatcttctggcGtccagggaacttgaacttgg	13	7	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47120456	T	T	47120456	3	4	189	1	0	0	0	0	1	0	0	0	13667	1145	40	3	164	3	RPL10L	14	47120456	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	11115213	47120456	60229084	784	151321											
SLC35F4	341880	broad.mit.edu	37	chr14	58055930	58055930	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcagttaacatgaaacCtacctgaattttttcattgg	8	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58055930	T	T	58055930	1	4	189	0	1	0	0	0	0	0	0	0	14705	696	24	4		4	SLC35F4	14	58055930	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	10935474	58055930	49293610	785	151322											
C14orf145	145508	broad.mit.edu	37	chr14	81289078	81289078	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaggggaatagccctgtaGaaaatggagatgccaaaaca	13	6	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81289078	A	A	81289078	1	1	189	0	1	0	0	0	0	0	0	0	1762	957	33	4		4	C14orf145	14	81289078	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	23233148	81289078	26060462	786	151323											
OTUB2	78990	broad.mit.edu	37	chr14	94510400	94510400	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcagaaacttcttcaatgCtgtgagttcacctggtccct	8	11	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94510400	T	T	94510400	3	4	189	1	0	0	0	0	1	0	0	0	11406	811	28	4	316	4	OTUB2	14	94510400	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	13221322	94510400	12839140	787	151324											
PPP4R4	57718	broad.mit.edu	37	chr14	94725265	94725265	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagaggtttaattgaaCtcacagttccacgtggctgg	11	7	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94725265	G	G	94725265	1	3	189	0	1	0	0	0	0	0	0	0	12506	580	20	4		4	PPP4R4	14	94725265	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	214865	94725265	12624275	788	151325											
GSC	145258	broad.mit.edu	37	chr14	95235082	95235082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggcggcgggacacccCgcgcaggccaacaaaaggag	17	12	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95235082	A	A	95235082	1	1	189	0	1	0	0	0	0	0	0	0	6880	667	23	1		1	GSC	14	95235082	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	509817	95235082	12114458	789	151326											
OR4M2	390538	broad.mit.edu	37	chr15	22369380	22369380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatttgactcgttttccCtagataaagtggtgtctgtg	10	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22369380	A	A	22369380	3	1	189	1	0	0	0	0	1	0	0	0	11170	680	24	2	807	2	OR4M2	15	22369380	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08		22369380	80162012	790	151327											
TUBGCP5	114791	broad.mit.edu	37	chr15	22864307	22864307	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaacatggcagaatgtGtcttttcttaatgtccaact	8	7	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22864307	T	T	22864307	2	4	189	1	0	0	0	0	0	0	0	1	16895	1364	48	3		3	TUBGCP5	15	22864307	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	494927	22864307	79667085	791	151328											
GABRB3	2562	broad.mit.edu	37	chr15	26806018	26806018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaagaaatatcatgcaaGtaaatgcagtagctgctgag	9	6	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26806018	T	T	26806018	1	4	189	0	1	0	0	0	0	0	0	0	6228	1044	36	3		3	GABRB3	15	26806018	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3941711	26806018	75725374	792	151329											
GABRB3	2562	broad.mit.edu	37	chr15	26806069	26806069	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggtggggtcaaggtggtgGagagcctacccggttgcttt	17	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26806069	A	A	26806069	1	1	189	0	1	0	0	0	0	0	0	0	6228	1189	41	4		4	GABRB3	15	26806069	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	51	26806069	75725323	793	151330											
OCA2	4948	broad.mit.edu	37	chr15	28195702	28195702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccagcttgaaccaagcCcaggccacctggcaagttgg	11	15	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28195702	A	A	28195702	1	1	189	0	1	0	0	0	0	0	0	0	10910	638	22	2		2	OCA2	15	28195702	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1389633	28195702	74335690	794	151331											
APBA2	321	broad.mit.edu	37	chr15	29346220	29346220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagggctatgtgcccgagGgcctggagctggctgccctg	18	11	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29346220	T	T	29346220	3	4	189	1	0	0	0	0	1	0	0	0	759	1232	43	2	135	2	APBA2	15	29346220	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1150518	29346220	73185172	795	151332											
TRPM1	4308	broad.mit.edu	37	chr15	31332588	31332588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagggtgaagccacagtGgccgcaagctgtttcttaga	13	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31332588	T	T	31332588	1	4	189	0	1	0	0	0	0	0	0	0	16710	1363	47	2		2	TRPM1	15	31332588	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1986368	31332588	71198804	796	151333											
RYR3	6263	broad.mit.edu	37	chr15	33895391	33895391	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagaagtggtacttcgagCtgattatcgaccaggtggac	12	8	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33895391	A	A	33895391	3	1	189	1	0	0	0	0	1	0	0	0	13881	796	28	3	2060	3	RYR3	15	33895391	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2562803	33895391	68636001	797	151334											
RYR3	6263	broad.mit.edu	37	chr15	34040550	34040550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggcatcgtaggtgggaCcatctaagatgaaccctggg	15	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34040550	A	A	34040550	1	1	189	0	1	0	0	0	0	0	0	0	13881	522	18	3		3	RYR3	15	34040550	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	145159	34040550	68490842	798	151335											
RYR3	6263	broad.mit.edu	37	chr15	34078209	34078209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccctttctccccagtccCcagcccaggggccaagataa	8	18	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34078209	A	A	34078209	1	1	189	0	1	0	0	0	0	0	0	0	13881	638	22	2		2	RYR3	15	34078209	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	37659	34078209	68453183	799	151336											
RYR3	6263	broad.mit.edu	37	chr15	34113753	34113753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccatggtggttgagacgCtgaagctggggatcgccatt	15	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34113753	A	A	34113753	3	1	189	1	0	0	0	0	1	0	0	0	13881	796	28	3	11263	3	RYR3	15	34113753	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	35544	34113753	68417639	800	151337											
SLC12A6	9990	broad.mit.edu	37	chr15	34546860	34546860	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaaggctgtattcgttTgcatttactttcacaaaaga	7	6	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34546860	G	G	34546860	1	3	189	0	1	0	0	0	0	0	0	0	14500	1827	63	5		5	SLC12A6	15	34546860	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	433107	34546860	67984532	801	151338											
ZNF770	54989	broad.mit.edu	37	chr15	35273923	35273923	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacatttgatctgactctgaGacctcgtatttttgaacacc	7	10	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35273923	A	A	35273923	2	1	189	1	0	0	0	0	0	0	0	1	18272	929	33	4		4	ZNF770	15	35273923	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	727063	35273923	67257469	802	151339											
ATPBD4	89978	broad.mit.edu	37	chr15	35703130	35703130	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttacattttttaaagataaCtatcagataggaactttaaa	5	4	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35703130	G	G	35703130	1	3	189	0	1	0	0	0	0	0	0	0	1206	580	20	4		4	ATPBD4	15	35703130	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	429207	35703130	66828262	803	151340											
PAK6	56924	broad.mit.edu	37	chr15	40564712	40564712	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccctggctggtgaggacacAggtgttgtgacacatgagca	15	9	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40564712	T	T	40564712	2	4	189	1	0	0	0	0	0	0	0	1	11498	175	7	5		5	PAK6	15	40564712	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	4861582	40564712	61966680	804	151341											
TTBK2	146057	broad.mit.edu	37	chr15	43093914	43093914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatctgggactgcagctccCgatctcctcttcatacagct	8	14	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43093914	A	A	43093914	1	1	189	0	1	0	0	0	0	0	0	0	16803	667	23	1		1	TTBK2	15	43093914	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2529202	43093914	59437478	805	151342											
C15orf43	145645	broad.mit.edu	37	chr15	45253761	45253761	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttttatttgggaacaagaCcaacattttctgatagaaaa	7	5	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45253761	A	A	45253761	3	1	189	1	0	0	0	0	1	0	0	0	1810	506	18	3	341	3	C15orf43	15	45253761	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2159847	45253761	57277631	806	151343											
SHC4	399694	broad.mit.edu	37	chr15	49118130	49118130	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcctaatacaaaatgggGtttcttgaaatatcagtgtg	10	5	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49118130	A	A	49118130	1	1	189	0	1	0	0	0	0	0	0	0	14386	1276	44	4		4	SHC4	15	49118130	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	3864369	49118130	53413262	807	151344											
GNB5	10681	broad.mit.edu	37	chr15	52420447	52420447	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccactggggtagtacctgcaGagagaaagtactttatctac	10	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52420447	A	A	52420447	1	1	189	0	1	0	0	0	0	0	0	0	6585	957	33	4		4	GNB5	15	52420447	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3302317	52420447	50110945	808	151345											
UNC13C	440279	broad.mit.edu	37	chr15	54340974	54340974	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacactgatgtgaaccagaGggccgttaactcttgttata	9	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54340974	A	A	54340974	1	1	189	0	1	0	0	0	0	0	0	0	17112	1015	35	4		4	UNC13C	15	54340974	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1920527	54340974	48190418	809	151346											
TCF12	6938	broad.mit.edu	37	chr15	57544626	57544626	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgactttgccagaaaaatcGagttgagcagcaacttcacg	9	9	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57544626	T	T	57544626	1	4	189	0	1	0	0	0	0	0	0	0	15809	1058	37	3		3	TCF12	15	57544626	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3203652	57544626	44986766	810	151347											
ADAM10	102	broad.mit.edu	37	chr15	58974559	58974559	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaactgaaattaaaaagatCcaaattttaaacaattattt	2	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58974559	T	T	58974559	1	4	189	0	1	0	0	0	0	0	0	0	234	870	30	4		4	ADAM10	15	58974559	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1429933	58974559	43556833	811	151348											
MYO1E	4643	broad.mit.edu	37	chr15	59553681	59553681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgcttgaaagggttgaCtgagattaatacagatccta	9	7	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59553681	A	A	59553681	3	1	189	1	0	0	0	0	1	0	0	0	10166	565	20	3	3255	3	MYO1E	15	59553681	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	579122	59553681	42977711	812	151349											
PDCD7	10081	broad.mit.edu	37	chr15	65421301	65421301	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatttttccctcaataataTttggggtgggaggagctaga	12	5	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65421301	A	A	65421301	1	1	189	0	1	0	0	0	0	0	0	0	11719	1508	52	5		5	PDCD7	15	65421301	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	5867620	65421301	37110091	813	151350											
NOX5	79400	broad.mit.edu	37	chr15	69347862	69347862	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatgccaactggagccctgCagcttgcaggtatggatgaa	12	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69347862	T	T	69347862	1	4	189	0	1	0	0	0	0	0	0	0	10654	725	25	4		4	NOX5	15	69347862	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3926561	69347862	33183530	814	151351											
PAQR5	54852	broad.mit.edu	37	chr15	69677003	69677004	+	Intron	INS	-	T	T													ggtggagggtgagtgagcccINStctgtgttccaggttctttg							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69677004	T	T	69677003	6	5	189	0	1	1	1	0	0	0	0	0	11532	696	24	0		0	PAQR5	15	69677003	Intron	INS	-	TCGA-64-5778-01A-01D-1625-08	329141	69677003	32854389	815	151352											
TLE3	7090	broad.mit.edu	37	chr15	70358421	70358421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctggctgcccagggcgCccagtgccagcagcccggag	17	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70358421	A	A	70358421	3	1	189	1	0	0	0	0	1	0	0	0	16063	739	26	3	1865	3	TLE3	15	70358421	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	681418	70358421	32172971	816	151353											
RASGRF1	5923	broad.mit.edu	37	chr15	79310347	79310347	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgtacgtaccagtggaggctCtgcgttggtaaggcaccagg	15	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79310347	A	A	79310347	1	1	189	0	1	0	0	0	0	0	0	0	13180	928	32	3		3	RASGRF1	15	79310347	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	8951926	79310347	23221045	817	151354											
AP3B2	8120	broad.mit.edu	37	chr15	83333195	83333195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctggactccccagagcCgctctcactgctgctcttac	8	17	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83333195	A	A	83333195	3	1	189	1	0	0	0	0	1	0	0	0	747	652	23	1	1156	1	AP3B2	15	83333195	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	4022848	83333195	19198197	818	151355											
SH3GL3	6457	broad.mit.edu	37	chr15	84287069	84287069	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acaaactctggacatactttCgtaactgaaatgaattcaca	5	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84287069	G	G	84287069	1	3	189	0	1	0	0	0	0	0	0	0	14365	899	31	4		4	SH3GL3	15	84287069	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	953874	84287069	18244323	819	151356											
UNC45A	55898	broad.mit.edu	37	chr15	91489890	91489890	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggaagctacgggccatcCagacggtgtcctgcctcctg	13	15	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91489890	T	T	91489890	4	4	189	1	0	0	0	0	0	1	0	0	17114	595	21	4	1284	4	UNC45A	15	91489890	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	7202821	91489890	11041502	820	151357											
WDR90	197335	broad.mit.edu	37	chr16	712767	712767	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggacatgggcgtcgtgggcAccacggcgggcacgctgtgg	19	11	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	712767	T	T	712767	3	4	189	1	0	0	0	0	1	0	0	0	17464	159	6	5	4368	5	WDR90	16	712767	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08		712767	89641986	821	151358											
CACNA1H	8912	broad.mit.edu	37	chr16	1248521	1248521	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtggacacccactgtgaacAgtggacggggctcgggggtc	17	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1248521	T	T	1248521	1	4	189	0	1	0	0	0	0	0	0	0	2571	203	7	5		5	CACNA1H	16	1248521	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	535754	1248521	89106232	822	151359											
TPSD1	23430	broad.mit.edu	37	chr16	1306527	1306527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccccagccccaggccaGgccctgcagcaaacgggcat	11	19	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1306527	T	T	1306527	3	4	189	1	0	0	0	0	1	0	0	0	16549	991	35	2	99	2	TPSD1	16	1306527	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	58006	1306527	89048226	823	151360											
PRSS21	10942	broad.mit.edu	37	chr16	2868692	2868692	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccagctatagtgaccttaGtgatccctccgggtggatgg	13	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2868692	C	C	2868692	3	2	189	1	0	0	0	0	1	0	0	0	12724	1029	36	4	286	4	PRSS21	16	2868692	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1562165	2868692	87486061	824	151361											
NLRC3	197358	broad.mit.edu	37	chr16	3600416	3600416	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggcaggtggactcactcCaggctctccaggccctggtt	12	15	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3600416	T	T	3600416	2	4	189	1	0	0	0	0	0	0	0	1	10563	581	21	4		4	NLRC3	16	3600416	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	731724	3600416	86754337	825	151362											
A2BP1	54715	broad.mit.edu	37	chr16	7568325	7568325	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattaaacctgtaccctccCgcccagacgcactccgagca	6	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7568325	A	A	7568325	2	1	189	1	0	0	0	0	0	0	0	1	3	639	23	1		1	A2BP1	16	7568325	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	3967909	7568325	82786428	826	151363											
RUNDC2A	84127	broad.mit.edu	37	chr16	12142639	12142639	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctcattcactctgaaaGggctctgacggccttaccta	7	14	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12142639	T	T	12142639	1	4	189	0	1	0	0	0	0	0	0	0	13854	1015	35	2		2	RUNDC2A	16	12142639	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4574314	12142639	78212114	827	151364											
DNAH3	55567	broad.mit.edu	37	chr16	21011740	21011740	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggctgatttgccagtgcctGtgggacccacgaacagcatt	12	11	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21011740	C	C	21011740	3	2	189	1	0	0	0	0	1	0	0	0	4643	1377	48	4	6202	4	DNAH3	16	21011740	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	8869101	21011740	69343013	828	151365											
SCNN1B	6338	broad.mit.edu	37	chr16	23364156	23364156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcatttgctgaaggacctgGatgagctgatggaagctgtc	14	7	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23364156	T	T	23364156	3	4	189	1	0	0	0	0	1	0	0	0	14041	1174	41	3	352	3	SCNN1B	16	23364156	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2352416	23364156	66990597	829	151366											
SLC5A11	115584	broad.mit.edu	37	chr16	24888571	24888571	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcatccatcaacctcctttCttcacaggtagacatgtatg	5	12	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24888571	G	G	24888571	1	3	189	0	1	0	0	0	0	0	0	0	14777	928	32	4		4	SLC5A11	16	24888571	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1524415	24888571	65466182	830	151367											
ARHGAP17	55114	broad.mit.edu	37	chr16	24981854	24981854	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagagtcttccagctgagtCgatgcttcttgcatattttg	10	8	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24981854	A	A	24981854	2	1	189	1	0	0	0	0	0	0	0	1	869	871	31	3		3	ARHGAP17	16	24981854	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	93283	24981854	65372899	831	151368											
LCMT1	51451	broad.mit.edu	37	chr16	25143891	25143891	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaagtgtttagattttttTcgttagattttcacctaatt	5	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25143891	G	G	25143891	1	3	189	0	1	0	0	0	0	0	0	0	8750	1798	62	5		5	LCMT1	16	25143891	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	162037	25143891	65210862	832	151369											
HS3ST4	9951	broad.mit.edu	37	chr16	26147610	26147610	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagtcaataagctaaggaGgctccttgcctgagtccttg	11	10	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26147610	T	T	26147610	1	4	189	0	1	0	0	0	0	0	0	0	7434	1015	35	2		2	HS3ST4	16	26147610	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	1003719	26147610	64207143	833	151370											
KIAA0556	23247	broad.mit.edu	37	chr16	27751579	27751579	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgccagcggggacaaggAgcttggtctcggttgctcac	16	10	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27751579	G	G	27751579	3	3	189	1	0	0	0	0	1	0	0	0	8253	304	11	5	2019	5	KIAA0556	16	27751579	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	1603969	27751579	62603174	834	151371											
KIAA0556	23247	broad.mit.edu	37	chr16	27761018	27761018	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaccgctcccaccggggaCgcatctccaacacggagctc	10	18	1	0	rs150681595		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27761018	T	T	27761018	3	4	189	1	0	0	0	0	1	0	0	0	8253	536	19	4	2799	4	KIAA0556	16	27761018	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	9439	27761018	62593735	835	151372											
CD19	930	broad.mit.edu	37	chr16	28943320	28943320	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccggagagtctgaccaCcatgccacctcctcgcctcc	8	20	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28943320	A	A	28943320	1	1	189	0	1	0	0	0	0	0	0	0	3003	522	18	3		3	CD19	16	28943320	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	1182302	28943320	61411433	836	151373											
SEZ6L2	26470	broad.mit.edu	37	chr16	29889672	29889672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccacacgcagtcttggcCcgggctatagctctggggcc	13	16	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29889672	A	A	29889672	3	1	189	1	0	0	0	0	1	0	0	0	14257	623	22	2	1159	2	SEZ6L2	16	29889672	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	946352	29889672	60465081	837	151374											
FBXL19	54620	broad.mit.edu	37	chr16	30941500	30941500	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgccagctgctggaacGggtgcctgacacctcctctt	12	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30941500	T	T	30941500	3	4	189	1	0	0	0	0	1	0	0	0	5772	1116	39	1	982	1	FBXL19	16	30941500	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1051828	30941500	59413253	838	151375											
ITGAX	3687	broad.mit.edu	37	chr16	31383876	31383876	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagagggtgcacagcgtgggGcctgggtctcggagaaaacc	18	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31383876	C	C	31383876	1	2	189	0	1	0	0	0	0	0	0	0	7959	1218	42	4		4	ITGAX	16	31383876	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	442376	31383876	58970877	839	151376											
ITGAD	3681	broad.mit.edu	37	chr16	31422671	31422671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctccgtggtgagcagGgccacccctggggccgcttt	14	14	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31422671	T	T	31422671	3	4	189	1	0	0	0	0	1	0	0	0	7954	1232	43	2	1594	2	ITGAD	16	31422671	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	38795	31422671	58932082	840	151377											
SLC5A2	6524	broad.mit.edu	37	chr16	31500068	31500068	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctgcggccacgcgccggcGaccgcgagctgctgctggtg	17	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31500068	A	A	31500068	3	1	189	1	0	0	0	0	1	0	0	0	14779	1058	37	4	1293	4	SLC5A2	16	31500068	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	77397	31500068	58854685	841	151378											
AHSP	51327	broad.mit.edu	37	chr16	31540022	31540022	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcctagctcagggacCcagcccctcctctctgagaa	7	19	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31540022	T	T	31540022	1	4	189	0	1	0	0	0	0	0	0	0	421	638	22	4		4	AHSP	16	31540022	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	39954	31540022	58814731	842	151379											
SLC6A2	6530	broad.mit.edu	37	chr16	55690563	55690563	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttatccaagcagagcctcgGcgtgcccccaggaccggtaa	11	14	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55690563	A	A	55690563	1	1	189	0	1	0	0	0	0	0	0	0	14797	1218	42	4		4	SLC6A2	16	55690563	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	24150541	55690563	34664190	843	151380											
TRAPPC2L	51693	broad.mit.edu	37	chr16	88926508	88926508	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagctatgagcaccatcccCctagggcagaggttttaaag	10	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88926508	T	T	88926508	1	4	189	0	1	0	0	0	0	0	0	0	16583	638	22	4		4	TRAPPC2L	16	88926508	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	33235945	88926508	1428245	844	151381											
SPG7	6687	broad.mit.edu	37	chr16	89598805	89598805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagaactttgtctggcccGggtacaggaagaggctttgt	14	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89598805	T	T	89598805	1	4	189	0	1	0	0	0	0	0	0	0	15162	1131	39	1		1	SPG7	16	89598805	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	672297	89598805	755948	845	151382											
FAM101B	359845	broad.mit.edu	37	chr17	293213	293213	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctggctgcaggaggccacCgccaggcccaggggcagctg	17	14	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	293213	G	G	293213	2	3	189	1	0	0	0	0	0	0	0	1	5427	639	23	4		4	FAM101B	17	293213	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08		293213	80901997	846	151383											
SPAG7	9552	broad.mit.edu	37	chr17	4864095	4864095	+	Frame_Shift_Del	DEL	C	-	-													tctcacccttttacgaaactCcactttctgttgtttctctt							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4864095	-	-	4864095	7	5	189	1	0	1	0	1	0	0	0	0	15099	864	30	0	568	0	SPAG7	17	4864095	Frame_Shift_Del	DEL	C	TCGA-64-5778-01A-01D-1625-08	4570882	4864095	76331115	847	151384											
USP6	9098	broad.mit.edu	37	chr17	5037178	5037178	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcttggccctgccctAcagatcatgaaggagagggg	12	13	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5037178	T	T	5037178	1	4	189	0	1	0	0	0	0	0	0	0	17213	406	14	5		5	USP6	17	5037178	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	173083	5037178	76158032	848	151385											
TP53	7157	broad.mit.edu	37	chr17	7577565	7577565	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccgcccatgcaggaactgTtacacatgtagttgtagtgg	12	9	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7577565	C	C	7577565	3	2	189	1	0	0	0	0	1	0	0	0	16505	1725	60	5	574	5	TP53	17	7577565	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	2540387	7577565	73617645	849	151386											
C17orf59	54785	broad.mit.edu	37	chr17	8092736	8092736	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtgcaggcgctgggcaGggccgcgcaggggcagaagg	23	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8092736	A	A	8092736	2	1	189	1	0	0	0	0	0	0	0	1	1883	987	35	4		4	C17orf59	17	8092736	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	515171	8092736	73102474	850	151387											
MYH4	4622	broad.mit.edu	37	chr17	10359666	10359666	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catttaaaaagtttacaaaaCctttagtagtatactaaaaa	3	5	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10359666	T	T	10359666	1	4	189	0	1	0	0	0	0	0	0	0	10131	522	18	4		4	MYH4	17	10359666	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2266930	10359666	70835544	851	151388											
RAI1	10743	broad.mit.edu	37	chr17	17701461	17701461	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctgtgaggaggcctcGctgccgcttgagagaacact	14	12	0	3	rs146112263	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17701461	T	T	17701461	2	4	189	1	0	0	0	0	0	0	0	1	13115	1074	38	3		3	RAI1	17	17701461	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	7341795	17701461	63493749	852	151389											
CYTSB	92521	broad.mit.edu	37	chr17	20000015	20000015	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcagagcagggggccaCggcccagaccgggtgcggcc	17	15	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20000015	T	T	20000015	2	4	189	1	0	0	0	0	0	0	0	1	4243	535	19	4		4	CYTSB	17	20000015	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	2298554	20000015	61195195	853	151390											
MAP2K3	5606	broad.mit.edu	37	chr17	21201873	21201873	+	Intron	DEL	G	-	-													ggaaggagtgagaggcaggtGgggccagccctgctttacct							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21201873	-	-	21201873	6	5	189	0	1	1	0	1	0	0	0	0	9330	1363	47	0		0	MAP2K3	17	21201873	Intron	DEL	G	TCGA-64-5778-01A-01D-1625-08	1201858	21201873	59993337	854	151391											
MAP2K3	5606	broad.mit.edu	37	chr17	21207907	21207907	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctcaggagaggatgggGcggggagaaatctgcccagg	19	8	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21207907	A	A	21207907	1	1	189	0	1	0	0	0	0	0	0	0	9330	1218	42	4		4	MAP2K3	17	21207907	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	6034	21207907	59987303	855	151392											
KCNJ12	3768	broad.mit.edu	37	chr17	21319719	21319719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaggtgccctctacgccCcgctgcagtgcgaaggatct	12	13	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21319719	A	A	21319719	2	1	189	1	0	0	0	0	0	0	0	1	8116	610	22	2		2	KCNJ12	17	21319719	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	111812	21319719	59875491	856	151393											
EFCAB5	374786	broad.mit.edu	37	chr17	28380557	28380557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattgaagaacaacaacaaGgcaaaaagccaactgcagag	8	9	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28380557	T	T	28380557	3	4	189	1	0	0	0	0	1	0	0	0	4978	1000	35	2	1623	2	EFCAB5	17	28380557	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	7060838	28380557	52814653	857	151394											
SLFN11	91607	broad.mit.edu	37	chr17	33690157	33690157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctttttacatattcttGgaagtgttttgtagagaact	8	5	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33690157	T	T	33690157	3	4	189	1	0	0	0	0	1	0	0	0	14847	1357	47	2	2051	2	SLFN11	17	33690157	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5309600	33690157	47505053	858	151395											
TBC1D3C	414060	broad.mit.edu	37	chr17	34641410	34641410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccagatgacctcaaagGtcccatgggattctaatctg	9	10	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34641410	T	T	34641410	1	4	189	0	1	0	0	0	0	0	0	0	15741	1276	44	3		3	TBC1D3C	17	34641410	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	951253	34641410	46553800	859	151396											
ACACA	31	broad.mit.edu	37	chr17	35766395	35766395	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtagaccaccacatcctctCatcattgcgcctcaatttgg	6	14	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35766395	T	T	35766395	1	4	189	0	1	0	0	0	0	0	0	0	106	841	29	4		4	ACACA	17	35766395	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	1124985	35766395	45428815	860	151397											
KRT39	390792	broad.mit.edu	37	chr17	39119941	39119941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactggacttgtgcctctaGgtcggccttgcccagggtca	13	12	2	1	rs145339869	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39119941	T	T	39119941	3	4	189	1	0	0	0	0	1	0	0	0	8547	991	35	2	849	2	KRT39	17	39119941	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3353546	39119941	42075269	861	151398											
KRTAP9-9	81870	broad.mit.edu	37	chr17	39389027	39389027	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgtgggtccagctgtggtCagagcagctcctgtgcacct	14	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39389027	A	A	39389027	1	1	189	0	1	0	0	0	0	0	0	0	8649	827	29	3		3	KRTAP9-9	17	39389027	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	269086	39389027	41806183	862	151399											
HAP1	9001	broad.mit.edu	37	chr17	39888998	39888998	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaaatataacatcactttGacgtcttcctgggtgatctt	7	9	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39888998	T	T	39888998	2	4	189	1	0	0	0	0	0	0	0	1	7019	1277	45	3		3	HAP1	17	39888998	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	499971	39888998	41306212	863	151400											
STAT5B	6777	broad.mit.edu	37	chr17	40364013	40364013	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctcaccctgttgaactGggaccaggacacagacaggc	11	14	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40364013	A	A	40364013	4	1	189	1	0	0	0	0	0	1	0	0	15387	1357	47	4	722	4	STAT5B	17	40364013	Nonsense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	475015	40364013	40831197	864	151401											
MAP3K14	9020	broad.mit.edu	37	chr17	43368045	43368045	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcttctccttggctttggGgagttccttctgctgcccca	10	14	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43368045	A	A	43368045	3	1	189	1	0	0	0	0	1	0	0	0	9340	1232	43	4	2835	4	MAP3K14	17	43368045	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3004032	43368045	37827165	865	151402											
OSBPL7	114881	broad.mit.edu	37	chr17	45895647	45895647	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctcaccatgagagcagcGgtccagcccatcactgtccc	8	19	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45895647	A	A	45895647	3	1	189	1	0	0	0	0	1	0	0	0	11376	1116	39	4	2010	4	OSBPL7	17	45895647	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2527602	45895647	35299563	866	151403											
HOXB3	3213	broad.mit.edu	37	chr17	46628425	46628425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtacgccgtccgcgcccgCttggacgccgccgaccccgg	14	19	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46628425	A	A	46628425	3	1	189	1	0	0	0	0	1	0	0	0	7369	796	28	3	732	3	HOXB3	17	46628425	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	732778	46628425	34566785	867	151404											
NGFR	4804	broad.mit.edu	37	chr17	47579381	47579381	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccccccccaacccaccccAgctttctcttgccagtctga	4	21	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47579381	T	T	47579381	1	4	189	0	1	0	0	0	0	0	0	0	10491	203	7	5		5	NGFR	17	47579381	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	950956	47579381	33615829	868	151405											
SLC35B1	10237	broad.mit.edu	37	chr17	47780409	47780409	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaggtccggtgggcttcTgggtatctgccattggtcta	16	8	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47780409	A	A	47780409	1	1	189	0	1	0	0	0	0	0	0	0	14689	1595	55	5		5	SLC35B1	17	47780409	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	201028	47780409	33414801	869	151406											
KIF2B	84643	broad.mit.edu	37	chr17	51900813	51900813	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggtccccagcaaaccttGtctgatgaagcagaaaaagt	11	9	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51900813	C	C	51900813	3	2	189	1	0	0	0	0	1	0	0	0	8368	1377	48	4	421	4	KIF2B	17	51900813	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4120404	51900813	29294397	870	151407											
STXBP4	252983	broad.mit.edu	37	chr17	53077255	53077255	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcactccataaattccctAtacatttttacattggttat	3	9	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53077255	G	G	53077255	1	3	189	0	1	0	0	0	0	0	0	0	15473	464	16	5		5	STXBP4	17	53077255	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	1176442	53077255	28117955	871	151408											
TRIM25	7706	broad.mit.edu	37	chr17	54969341	54969341	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcggccgagcctgctttctGggccctgccggttcatgctt	13	14	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54969341	A	A	54969341	3	1	189	1	0	0	0	0	1	0	0	0	16623	1348	47	4	283	4	TRIM25	17	54969341	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1892086	54969341	26225869	872	151409											
C17orf47	284083	broad.mit.edu	37	chr17	56620524	56620524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagttggctctactgactGtacccctggggagatggtga	15	8	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56620524	T	T	56620524	3	4	189	1	0	0	0	0	1	0	0	0	1874	1386	48	3	696	3	C17orf47	17	56620524	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1651183	56620524	24574686	873	151410											
CLTC	1213	broad.mit.edu	37	chr17	57728798	57728798	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatacttttttaaagtttAttagtgaagctttgtaaaat	6	2	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57728798	G	G	57728798	1	3	189	0	1	0	0	0	0	0	0	0	3598	464	16	5		5	CLTC	17	57728798	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	1108274	57728798	23466412	874	151411											
HEATR6	63897	broad.mit.edu	37	chr17	58133009	58133009	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcatcagaactaatgaaTgacttcacttgagtaacacc	8	9	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58133009	C	C	58133009	1	2	189	0	1	0	0	0	0	0	0	0	7100	1479	51	5		5	HEATR6	17	58133009	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	404211	58133009	23062201	875	151412											
TBX4	9496	broad.mit.edu	37	chr17	59560841	59560841	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttccttacagtaccattcAggaatggggactgtggagaa	11	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59560841	T	T	59560841	2	4	189	1	0	0	0	0	0	0	0	1	15782	175	7	5		5	TBX4	17	59560841	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	1427832	59560841	21634369	876	151413											
METTL2A	339175	broad.mit.edu	37	chr17	60525246	60525246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaggcaggctgtttcctGcggttccctgctgctcacac	10	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60525246	T	T	60525246	1	4	189	0	1	0	0	0	0	0	0	0	9592	1334	46	3		3	METTL2A	17	60525246	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	964405	60525246	20669964	877	151414											
MRC2	9902	broad.mit.edu	37	chr17	60743900	60743900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtccacgctgtcgtggaGggaggcctgggccagctgcg	17	13	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60743900	T	T	60743900	3	4	189	1	0	0	0	0	1	0	0	0	9852	1000	35	2	793	2	MRC2	17	60743900	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	218654	60743900	20451310	878	151415											
GH1	2688	broad.mit.edu	37	chr17	61994973	61994973	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagggtgtagagaaaggccTggaggattcacgaggggaaa	17	5	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61994973	A	A	61994973	1	1	189	0	1	0	0	0	0	0	0	0	6431	1595	55	5		5	GH1	17	61994973	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1251073	61994973	19200237	879	151416											
DNAI2	64446	broad.mit.edu	37	chr17	72277987	72277987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacgtgtacgtcaagaagCgcagcgagttcgggaagcag	15	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72277987	A	A	72277987	3	1	189	1	0	0	0	0	1	0	0	0	4650	768	27	3	33	3	DNAI2	17	72277987	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	10283014	72277987	8917223	880	151417											
CD300C	10871	broad.mit.edu	37	chr17	72537610	72537610	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggaaaaggctgaaggagGctcacaaaggattccaggag	15	7	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72537610	T	T	72537610	1	4	189	0	1	0	0	0	0	0	0	0	3027	1218	42	3		3	CD300C	17	72537610	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	259623	72537610	8657600	881	151418											
SLC9A3R1	9368	broad.mit.edu	37	chr17	72764449	72764449	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccacttgttcctggcacAccagcctgcctttgaggtca	9	16	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72764449	C	C	72764449	1	2	189	0	1	0	0	0	0	0	0	0	14828	174	6	5		5	SLC9A3R1	17	72764449	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	226839	72764449	8430761	882	151419											
NAT9	26151	broad.mit.edu	37	chr17	72768467	72768467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgtgccaggctccagtgCgggcacttggcagacaccat	13	14	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72768467	A	A	72768467	1	1	189	0	1	0	0	0	0	0	0	0	10276	783	27	3		3	NAT9	17	72768467	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4018	72768467	8426743	883	151420											
NAT9	26151	broad.mit.edu	37	chr17	72769861	72769861	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggctttagacatggaggaCtcattcagaggcatacgtct	12	8	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72769861	G	G	72769861	1	3	189	0	1	0	0	0	0	0	0	0	10276	580	20	4		4	NAT9	17	72769861	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1394	72769861	8425349	884	151421											
OTOP3	347741	broad.mit.edu	37	chr17	72939259	72939259	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaagaagcagtagagccaaGattccgacccagtctttctc	9	12	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72939259	T	T	72939259	1	4	189	0	1	0	0	0	0	0	0	0	11401	957	33	3		3	OTOP3	17	72939259	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	169398	72939259	8255951	885	151422											
GRB2	2885	broad.mit.edu	37	chr17	73316501	73316501	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcggggaaacatgccggtcTgcccgtggcaagctcctttc	13	13	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73316501	A	A	73316501	3	1	189	1	0	0	0	0	1	0	0	0	6824	1580	55	5	55	5	GRB2	17	73316501	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	377242	73316501	7878709	886	151423											
ACOX1	51	broad.mit.edu	37	chr17	73953426	73953426	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccacctcagcctcccaaagTgttaggatttcaccaccaag	6	16	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73953426	C	C	73953426	1	2	189	0	1	0	0	0	0	0	0	0	158	1711	59	5		5	ACOX1	17	73953426	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	636925	73953426	7241784	887	151424											
ENGASE	64772	broad.mit.edu	37	chr17	77079627	77079627	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccttgcctttcgtcacGtccttctgcctgggcatggg	11	14	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77079627	T	T	77079627	2	4	189	1	0	0	0	0	0	0	0	1	5160	1132	40	3		3	ENGASE	17	77079627	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	3126201	77079627	4115583	888	151425											
CBX4	8535	broad.mit.edu	37	chr17	77807939	77807939	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgccaccgccaccgccGccgacgccggtgtctcgggc	13	22	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77807939	A	A	77807939	3	1	189	1	0	0	0	0	1	0	0	0	2746	1087	38	4	184	4	CBX4	17	77807939	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	728312	77807939	3387271	889	151426											
SLC16A3	9123	broad.mit.edu	37	chr17	80194624	80194624	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccgctctgcagtgtgtgCgtgaaccgctttggctgccg	15	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80194624	A	A	80194624	4	1	189	1	0	0	0	0	0	1	0	0	14522	776	27	3	249	3	SLC16A3	17	80194624	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2386685	80194624	1000586	890	151427											
CSNK1D	1453	broad.mit.edu	37	chr17	80213371	80213371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagaagttgaagaggtcCtccaggcttggccccagcag	14	11	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80213371	A	A	80213371	3	1	189	1	0	0	0	0	1	0	0	0	3986	680	24	2	1042	2	CSNK1D	17	80213371	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	18747	80213371	981839	891	151428											
DLGAP1	9229	broad.mit.edu	37	chr18	3502601	3502601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagcatgtcccaaaaccCcgccaaatcctgggaggtgg	11	14	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3502601	A	A	3502601	3	1	189	1	0	0	0	0	1	0	0	0	4599	623	22	2	327	2	DLGAP1	18	3502601	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08		3502601	74574647	892	151429											
RIOK3	8780	broad.mit.edu	37	chr18	21061269	21061269	+	3'UTR	DEL	A	-	-													atacccactgcttcagtgttAacacagcagtgattgtcagc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21061269	-	-	21061269	6	5	189	0	1	1	0	1	0	0	0	0	13490	377	13	0		0	RIOK3	18	21061269	3'UTR	DEL	A	TCGA-64-5778-01A-01D-1625-08	17558668	21061269	57015979	893	151430											
DSG4	147409	broad.mit.edu	37	chr18	28989226	28989226	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagttctatgtgatttgGtggtgctgtatttataaact	9	4	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28989226	T	T	28989226	1	4	189	0	1	0	0	0	0	0	0	0	4819	1276	44	3		3	DSG4	18	28989226	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	7927957	28989226	49088022	894	151431											
KLHL14	57565	broad.mit.edu	37	chr18	30267098	30267098	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgtcacaaacgtttcaggTgcaagaaataaacacttacc	7	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30267098	A	A	30267098	1	1	189	0	1	0	0	0	0	0	0	0	8441	1711	59	5		5	KLHL14	18	30267098	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1277872	30267098	47810150	895	151432											
C18orf34	374864	broad.mit.edu	37	chr18	30950088	30950088	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttgttgacacaaggtgctgGaatatttactacggcacagc	10	8	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30950088	T	T	30950088	3	4	189	1	0	0	0	0	1	0	0	0	1920	1174	41	3	2401	3	C18orf34	18	30950088	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	682990	30950088	47127160	896	151433											
SLC14A1	6563	broad.mit.edu	37	chr18	43328320	43328320	+	Intron	DEL	C	-	-													tctacgaagcattgttctttCcctcctttttttttctgtag							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43328320	-	-	43328320	6	5	189	0	1	1	0	1	0	0	0	0	14509	870	30	0		0	SLC14A1	18	43328320	Intron	DEL	C	TCGA-64-5778-01A-01D-1625-08	12378232	43328320	34748928	897	151434											
SKA1	220134	broad.mit.edu	37	chr18	47908532	47908532	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcttgaagaagattacaaaGacatagaacatcttaaagaa	6	6	2	6			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47908532	T	T	47908532	3	4	189	1	0	0	0	0	1	0	0	0	14465	942	33	3	257	3	SKA1	18	47908532	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4580212	47908532	30168716	898	151435											
TCF4	6925	broad.mit.edu	37	chr18	52896228	52896228	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcacggacccgcagacgctCtcgggcattgttggccatcc	12	15	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52896228	A	A	52896228	4	1	189	1	0	0	0	0	0	1	0	0	15817	922	32	3	294	3	TCF4	18	52896228	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	4987696	52896228	25181020	899	151436											
WDR7	23335	broad.mit.edu	37	chr18	54363593	54363593	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctggaggtgtggatttttCagtcataatttgggacatat	11	4	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54363593	T	T	54363593	3	4	189	1	0	0	0	0	1	0	0	0	17447	838	29	4	1520	4	WDR7	18	54363593	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1467365	54363593	23713655	900	151437											
ST8SIA3	51046	broad.mit.edu	37	chr18	55024767	55024767	+	Intron	DEL	G	-	-													aatcaatgttgtaatctcttGggggtgggagccatccaatt							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55024767	-	-	55024767	6	5	189	0	1	1	0	1	0	0	0	0	15351	1363	47	0		0	ST8SIA3	18	55024767	Intron	DEL	G	TCGA-64-5778-01A-01D-1625-08	661174	55024767	23052481	901	151438											
CDH19	28513	broad.mit.edu	37	chr18	64212068	64212068	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcattctctcctatgtcaTtatcatatgccatgattgtt	5	10	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64212068	C	C	64212068	3	2	189	1	0	0	0	0	1	0	0	0	3134	1493	52	5	1498	5	CDH19	18	64212068	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	9187301	64212068	13865180	902	151439											
RTTN	25914	broad.mit.edu	37	chr18	67753760	67753760	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcttgtatatagtttcatCaataatgaaatatactactt	4	5	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67753760	T	T	67753760	1	4	189	0	1	0	0	0	0	0	0	0	13848	841	29	4		4	RTTN	18	67753760	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	3541692	67753760	10323488	903	151440											
ATP8B3	148229	broad.mit.edu	37	chr19	1801891	1801891	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggaaactgaggcctggaaGatgacatccctgaccctgca	11	11	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1801891	T	T	1801891	1	4	189	0	1	0	0	0	0	0	0	0	1200	957	33	3		3	ATP8B3	19	1801891	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08		1801891	57327092	904	151441											
MATK	4145	broad.mit.edu	37	chr19	3784122	3784122	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgtcctgcccactcacGgcatgaggctgagcttgggg	13	15	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3784122	A	A	3784122	3	1	189	1	0	0	0	0	1	0	0	0	9424	1130	39	4	1201	4	MATK	19	3784122	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1982231	3784122	55344861	905	151442											
SEMA6B	10501	broad.mit.edu	37	chr19	4558098	4558098	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggatgttgaggtcgtcaGcaccttctgcgggggtcagg	17	9	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4558098	A	A	4558098	3	1	189	1	0	0	0	0	1	0	0	0	14153	971	34	4	2541	4	SEMA6B	19	4558098	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	773976	4558098	54570885	906	151443											
TUBB4	10382	broad.mit.edu	37	chr19	6495933	6495933	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcatccgtattctccaCcagctggtgcacagacagcg	10	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6495933	G	G	6495933	3	3	189	1	0	0	0	0	1	0	0	0	16884	507	18	4	761	4	TUBB4	19	6495933	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1937835	6495933	52633050	907	151444											
FBN3	84467	broad.mit.edu	37	chr19	8152944	8152944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcaagcagagttgtacCctcgcaggtcatcatgaggc	13	11	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8152944	A	A	8152944	3	1	189	1	0	0	0	0	1	0	0	0	5761	637	22	2	1985	2	FBN3	19	8152944	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1657011	8152944	50976039	908	151445											
MUC16	94025	broad.mit.edu	37	chr19	9047816	9047816	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggaagagttgagctactcTctgcaggatgggtgaccaat	14	7	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9047816	A	A	9047816	3	1	189	1	0	0	0	0	1	0	0	0	10067	1551	54	5	10028	5	MUC16	19	9047816	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	894872	9047816	50081167	909	151446											
MUC16	94025	broad.mit.edu	37	chr19	9064152	9064152	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgtggaaggatgcacgGcttctgtatgtgcagtgtct	14	6	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9064152	A	A	9064152	3	1	189	1	0	0	0	0	1	0	0	0	10067	1203	42	4	20557	4	MUC16	19	9064152	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	16336	9064152	50064831	910	151447											
ZNF177	7730	broad.mit.edu	37	chr19	9492374	9492374	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagccttataaatgtattcAgtgtgaaaaagcctttagca	8	6	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9492374	T	T	9492374	3	4	189	1	0	0	0	0	1	0	0	0	17872	188	7	5	1385	5	ZNF177	19	9492374	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	428222	9492374	49636609	911	151448											
COL5A3	50509	broad.mit.edu	37	chr19	10114441	10114441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcccaccagcagagacccCatcattcaggtcacctgggg	9	16	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10114441	A	A	10114441	1	1	189	0	1	0	0	0	0	0	0	0	3730	609	21	2		2	COL5A3	19	10114441	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	622067	10114441	49014542	912	151449											
CD97	976	broad.mit.edu	37	chr19	14508147	14508147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcacctggctgtgccaGgcgttcgttcattcttctga	13	11	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14508147	T	T	14508147	1	4	189	0	1	0	0	0	0	0	0	0	3079	1015	35	2		2	CD97	19	14508147	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4393706	14508147	44620836	913	151450											
EPS15L1	58513	broad.mit.edu	37	chr19	16504739	16504739	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacacagtctaaagaccgGtccgggaaacactgaatttt	10	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16504739	A	A	16504739	1	1	189	0	1	0	0	0	0	0	0	0	5235	1276	44	4		4	EPS15L1	19	16504739	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1996592	16504739	42624244	914	151451											
USHBP1	83878	broad.mit.edu	37	chr19	17370570	17370570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagtgatataactgaccCcaattgtcaccaagagcctg	8	10	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17370570	A	A	17370570	1	1	189	0	1	0	0	0	0	0	0	0	17163	638	22	2		2	USHBP1	19	17370570	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	865831	17370570	41758413	915	151452											
FCHO1	23149	broad.mit.edu	37	chr19	17881118	17881118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactctgtctaaaaaaaaCcaaaccaaaacacacacaca	2	12	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17881118	A	A	17881118	1	1	189	0	1	0	0	0	0	0	0	0	5844	522	18	3		3	FCHO1	19	17881118	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	510548	17881118	41247865	916	151453											
ZNF257	113835	broad.mit.edu	37	chr19	22270783	22270783	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttatttcttttagttatGtgttctcatattgctgaaga	6	4	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22270783	T	T	22270783	3	4	189	1	0	0	0	0	1	0	0	0	17926	1377	48	3	245	3	ZNF257	19	22270783	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4389665	22270783	36858200	917	151454											
ZNF257	113835	broad.mit.edu	37	chr19	22272257	22272257	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcataatggagaaaaaccCtacaaatgtgaagaatgtgt	8	5	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22272257	A	A	22272257	1	1	189	0	1	0	0	0	0	0	0	0	17926	696	24	2		2	ZNF257	19	22272257	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	1474	22272257	36856726	918	151455											
ZNF536	9745	broad.mit.edu	37	chr19	31038886	31038886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtccgcactgtgactatgCcggcacgcagtcagcatcct	11	14	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31038886	A	A	31038886	3	1	189	1	0	0	0	0	1	0	0	0	18101	739	26	3	2370	3	ZNF536	19	31038886	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	8766629	31038886	28090097	919	151456											
TSHZ3	57616	broad.mit.edu	37	chr19	31770398	31770398	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccagtgggaccgtgacctCcttggtctcctcttcgttct	9	14	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31770398	A	A	31770398	4	1	189	1	0	0	0	0	0	1	0	0	16750	864	30	3	2948	3	TSHZ3	19	31770398	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	731512	31770398	27358585	920	151457											
ANKRD27	84079	broad.mit.edu	37	chr19	33134327	33134327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcccagccactccgccCcaccctcacctccactgcct	4	25	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33134327	A	A	33134327	1	1	189	0	1	0	0	0	0	0	0	0	655	638	22	2		2	ANKRD27	19	33134327	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1363929	33134327	25994656	921	151458											
ANKRD27	84079	broad.mit.edu	37	chr19	33134592	33134592	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccagcaaggccatgacggGggagccggagcgggtaaggc	18	10	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33134592	A	A	33134592	1	1	189	0	1	0	0	0	0	0	0	0	655	1247	43	4		4	ANKRD27	19	33134592	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	265	33134592	25994391	922	151459											
HAUS5	23354	broad.mit.edu	37	chr19	36109807	36109807	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcaggtgctgatactgggGcttcggcgctgttgcctgtg	17	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36109807	T	T	36109807	2	4	189	1	0	0	0	0	0	0	0	1	7035	1190	42	3		3	HAUS5	19	36109807	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	2975215	36109807	23019176	923	151460											
RBM42	79171	broad.mit.edu	37	chr19	36120454	36120454	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctgggggctccagtacCtggaatcccaactgctgtgc	12	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36120454	G	G	36120454	3	3	189	1	0	0	0	0	1	0	0	0	13244	681	24	4	167	4	RBM42	19	36120454	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	10647	36120454	23008529	924	151461											
HCST	10870	broad.mit.edu	37	chr19	36394904	36394904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccctggaggaggtgctgGggaaaccctgggggaggtgc	20	8	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36394904	T	T	36394904	1	4	189	0	1	0	0	0	0	0	0	0	7070	1247	43	2		2	HCST	19	36394904	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	274450	36394904	22734079	925	151462											
ZFP14	57677	broad.mit.edu	37	chr19	36831324	36831324	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgaatactctgatgttgGgtaagttgtgagagcagtct	14	4	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36831324	A	A	36831324	2	1	189	1	0	0	0	0	0	0	0	1	17765	1219	43	4		4	ZFP14	19	36831324	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	436420	36831324	22297659	926	151463											
ZNF345	25850	broad.mit.edu	37	chr19	37367788	37367788	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtttcagaggtgattgggAatgtaaaaaccagtttgaga	12	3	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37367788	G	G	37367788	3	3	189	1	0	0	0	0	1	0	0	0	17985	246	9	5	58	5	ZNF345	19	37367788	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	536464	37367788	21761195	927	151464											
ZNF829	374899	broad.mit.edu	37	chr19	37383322	37383322	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtaattattacttgactgAaatgtctcttctttagagat	8	5	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37383322	T	T	37383322	3	4	189	1	0	0	0	0	1	0	0	0	18311	246	9	5	931	5	ZNF829	19	37383322	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	15534	37383322	21745661	928	151465											
ZNF568	374900	broad.mit.edu	37	chr19	37440956	37440956	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagacaccacagaattcatActggggagaaaccttatgca	8	9	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37440956	C	C	37440956	3	2	189	1	0	0	0	0	1	0	0	0	18126	391	14	5	919	5	ZNF568	19	37440956	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	57634	37440956	21688027	929	151466											
ZNF383	163087	broad.mit.edu	37	chr19	37727054	37727054	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggaggaaacagcacctttGagatgttatccctgaagctc	11	9	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37727054	T	T	37727054	1	4	189	0	1	0	0	0	0	0	0	0	18000	1305	45	3		3	ZNF383	19	37727054	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	286098	37727054	21401929	930	151467											
ZNF569	148266	broad.mit.edu	37	chr19	37904566	37904566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcgagggaaggctttacCacattcattacatgcataag	8	8	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37904566	A	A	37904566	3	1	189	1	0	0	0	0	1	0	0	0	18127	594	21	2	1070	2	ZNF569	19	37904566	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	177512	37904566	21224417	931	151468											
RYR1	6261	broad.mit.edu	37	chr19	38959634	38959634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacttgggcagtgaacCatttgggcgcccctggcagc	14	13	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38959634	A	A	38959634	3	1	189	1	0	0	0	0	1	0	0	0	13879	594	21	2	3512	2	RYR1	19	38959634	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1055068	38959634	20169349	932	151469											
RYR1	6261	broad.mit.edu	37	chr19	38980787	38980787	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtccctggcagcctttgcGgagcgctatgtggacaagct	14	11	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38980787	T	T	38980787	2	4	189	1	0	0	0	0	0	0	0	1	13879	1103	39	1		1	RYR1	19	38980787	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	21153	38980787	20148196	933	151470											
RYR1	6261	broad.mit.edu	37	chr19	39008322	39008322	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgaggcctcctggatgaagCggctggctggtgggtcgggg	20	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39008322	T	T	39008322	3	4	189	1	0	0	0	0	1	0	0	0	13879	759	27	4	10271	4	RYR1	19	39008322	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	27535	39008322	20120661	934	151471											
MAP4K1	11184	broad.mit.edu	37	chr19	39090821	39090821	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagacaaggacgctgggaCcgacttcatcctcagggacc	11	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39090821	G	G	39090821	1	3	189	0	1	0	0	0	0	0	0	0	9351	522	18	4		4	MAP4K1	19	39090821	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	82499	39090821	20038162	935	151472											
MAP4K1	11184	broad.mit.edu	37	chr19	39101766	39101766	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgaagttgtggaaggcAgccgaccttgggaagaagaa	15	5	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39101766	T	T	39101766	2	4	189	1	0	0	0	0	0	0	0	1	9351	175	7	5		5	MAP4K1	19	39101766	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	10945	39101766	20027217	936	151473											
ECH1	1891	broad.mit.edu	37	chr19	39307034	39307034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaggaggcggctgccaccCcggggctgggagatgctctg	17	12	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39307034	A	A	39307034	1	1	189	0	1	0	0	0	0	0	0	0	4932	638	22	2		2	ECH1	19	39307034	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	205268	39307034	19821949	937	151474											
RPS16	6217	broad.mit.edu	37	chr19	39926288	39926288	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaatcatctccaggggccGcccgttcaccttgatgagac	9	15	4	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39926288	T	T	39926288	2	4	189	1	0	0	0	0	0	0	0	1	13738	1086	38	3		3	RPS16	19	39926288	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	619254	39926288	19202695	938	151475											
CYP2A7	1549	broad.mit.edu	37	chr19	41387975	41387975	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtgctctgtgttcagctgGaggtagtttccaatgaaggg	14	6	2	1	rs150838585	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41387975	T	T	41387975	2	4	189	1	0	0	0	0	0	0	0	1	4196	1161	41	3		3	CYP2A7	19	41387975	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	1461687	41387975	17741008	939	151476											
CYP2A7	1549	broad.mit.edu	37	chr19	41533417	41533417	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaactgggcagcccccaccCcgtgccacccatctccctgc	7	23	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41533417	T	T	41533417	1	4	189	0	1	0	0	0	0	0	0	0	4196	638	22	4		4	CYP2A7	19	41533417	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	145442	41533417	17595566	940	151477											
AXL	558	broad.mit.edu	37	chr19	41727213	41727213	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggcgctcataggttgtggGaagtcaggaatcctgagggg	18	6	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41727213	T	T	41727213	1	4	189	0	1	0	0	0	0	0	0	0	1243	1189	41	3		3	AXL	19	41727213	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	193796	41727213	17401770	941	151478											
ATP1A3	478	broad.mit.edu	37	chr19	42474126	42474126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccccaagggtggctgctcCactcctctggggatccgcac	12	17	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42474126	A	A	42474126	1	1	189	0	1	0	0	0	0	0	0	0	1134	609	21	2		2	ATP1A3	19	42474126	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	746913	42474126	16654857	942	151479											
MEGF8	1954	broad.mit.edu	37	chr19	42839594	42839594	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaatcagacccagccggGgacccccggaatgatcccct	9	17	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42839594	T	T	42839594	1	4	189	0	1	0	0	0	0	0	0	0	9556	1247	43	2		2	MEGF8	19	42839594	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	365468	42839594	16289389	943	151480											
ZNF226	7769	broad.mit.edu	37	chr19	44679818	44679818	+	Frame_Shift_Del	DEL	G	-	-													gtgatttcccttaccaggtaGggacagaactgtctattcaa							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44679818	-	-	44679818	7	5	189	1	0	1	0	1	0	0	0	0	17906	1000	35	0	471	0	ZNF226	19	44679818	Frame_Shift_Del	DEL	G	TCGA-64-5778-01A-01D-1625-08	1840224	44679818	14449165	944	151481											
PRKD2	25865	broad.mit.edu	37	chr19	47194946	47194946	+	Intron	DEL	C	-	-													ggctggagccacagcagcttCccccagcccggggctccctc							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47194946	-	-	47194946	6	5	189	0	1	1	0	1	0	0	0	0	12625	870	30	0		0	PRKD2	19	47194946	Intron	DEL	C	TCGA-64-5778-01A-01D-1625-08	2515128	47194946	11934037	945	151482											
ELSPBP1	64100	broad.mit.edu	37	chr19	48522898	48522898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaatgggataaagcgtgGcacagtttgtgtgtcataaa	11	5	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48522898	T	T	48522898	1	4	189	0	1	0	0	0	0	0	0	0	5125	1218	42	3		3	ELSPBP1	19	48522898	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1327952	48522898	10606085	946	151483											
TRPM4	54795	broad.mit.edu	37	chr19	49693476	49693476	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccacagtctctgctgacAcagaagtggtggggagatat	12	11	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49693476	C	C	49693476	2	2	189	1	0	0	0	0	0	0	0	1	16713	146	6	5		5	TRPM4	19	49693476	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	1170578	49693476	9435507	947	151484											
KLK6	5653	broad.mit.edu	37	chr19	51466449	51466449	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcccattggtcctcacCattagcccatcttcccatgg	6	17	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51466449	T	T	51466449	1	4	189	0	1	0	0	0	0	0	0	0	8479	609	21	4		4	KLK6	19	51466449	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1772973	51466449	7662534	948	151485											
HAS1	3036	broad.mit.edu	37	chr19	52220212	52220212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccctcccaatctctgccCctgcttacctagaggaccgc	7	19	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52220212	A	A	52220212	1	1	189	0	1	0	0	0	0	0	0	0	7027	638	22	2		2	HAS1	19	52220212	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	753763	52220212	6908771	949	151486											
ZNF432	9668	broad.mit.edu	37	chr19	52538395	52538395	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggcttttgtacttacagaGaatttagctgcagaataaag	9	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52538395	A	A	52538395	2	1	189	1	0	0	0	0	0	0	0	1	18033	933	33	4		4	ZNF432	19	52538395	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	318183	52538395	6590588	950	151487											
ZNF616	90317	broad.mit.edu	37	chr19	52627352	52627352	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatatgagagctcttctgTttacacaaaatgaggagaga	10	6	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52627352	C	C	52627352	1	2	189	0	1	0	0	0	0	0	0	0	18168	1740	60	5		5	ZNF616	19	52627352	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	88957	52627352	6501631	951	151488											
ZNF836	162962	broad.mit.edu	37	chr19	52659499	52659499	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaagatgtgaagtctgactGaagaccttgccacattcatt	8	9	2	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52659499	A	A	52659499	2	1	189	1	0	0	0	0	0	0	0	1	18316	1281	45	4		4	ZNF836	19	52659499	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	32147	52659499	6469484	952	151489											
ZNF83	55769	broad.mit.edu	37	chr19	53155989	53155989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacatttgtaaagtttccCtataccatggattgcttgat	6	7	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53155989	A	A	53155989	1	1	189	0	1	0	0	0	0	0	0	0	18312	696	24	2		2	ZNF83	19	53155989	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	496490	53155989	5972994	953	151490											
ZNF761	388561	broad.mit.edu	37	chr19	53958705	53958705	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcaaatcaatacttgaaaGacataggataattcatactg	5	6	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53958705	A	A	53958705	3	1	189	1	0	0	0	0	1	0	0	0	18265	942	33	4	955	4	ZNF761	19	53958705	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	802716	53958705	5170278	954	151491											
PRKCG	5582	broad.mit.edu	37	chr19	54387536	54387537	+	Intron	INS	-	C	C													gttctcctcctcgggccgtgINScccccgccctcaccccctcg							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54387537	C	C	54387536	6	5	189	0	1	1	1	0	0	0	0	0	12618	1334	46	0		0	PRKCG	19	54387536	Intron	INS	-	TCGA-64-5778-01A-01D-1625-08	428831	54387536	4741447	955	151492											
VSTM1	284415	broad.mit.edu	37	chr19	54561767	54561767	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacattctgggaatgagcctGacacttcagggtcacattgc	10	11	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54561767	T	T	54561767	3	4	189	1	0	0	0	0	1	0	0	0	17355	1299	45	3	590	3	VSTM1	19	54561767	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	174231	54561767	4567216	956	151493											
TSEN34	79042	broad.mit.edu	37	chr19	54697134	54697134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcgccttggaaccagcGtcagaaagaccctgctcctc	11	15	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54697134	T	T	54697134	3	4	189	1	0	0	0	0	1	0	0	0	16738	1145	40	3	864	3	TSEN34	19	54697134	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	135367	54697134	4431849	957	151494											
LAIR1	3903	broad.mit.edu	37	chr19	54867560	54867560	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taataactagtaggaaggctCaccgaggtgtccgtctctct	10	10	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54867560	A	A	54867560	1	1	189	0	1	0	0	0	0	0	0	0	8674	841	29	3		3	LAIR1	19	54867560	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	170426	54867560	4261423	958	151495											
LILRA2	11027	broad.mit.edu	37	chr19	55086909	55086909	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctcccaggccaacttcaCcctgggccctgtgagcccct	9	19	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55086909	T	T	55086909	3	4	189	1	0	0	0	0	1	0	0	0	8857	507	18	4	860	4	LILRA2	19	55086909	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	219349	55086909	4042074	959	151496											
LILRB4	11006	broad.mit.edu	37	chr19	55179043	55179043	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaattgactccagggagTcaggaggattcaaggacacc	13	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55179043	A	A	55179043	1	1	189	0	1	0	0	0	0	0	0	0	8865	1682	58	5		5	LILRB4	19	55179043	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	92134	55179043	3949940	960	151497											
KIR2DL3	3804	broad.mit.edu	37	chr19	55250052	55250052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgtgtgttggtgagtcCtggaagggcatcgagggagg	20	4	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55250052	A	A	55250052	1	1	189	0	1	0	0	0	0	0	0	0	8388	696	24	2		2	KIR2DL3	19	55250052	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	71009	55250052	3878931	961	151498											
KIR2DL3	3804	broad.mit.edu	37	chr19	55263628	55263628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaaatgagggcccagaaGtgccctctgagctgttttgt	12	8	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55263628	T	T	55263628	1	4	189	0	1	0	0	0	0	0	0	0	8388	1044	36	3		3	KIR2DL3	19	55263628	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	13576	55263628	3865355	962	151499											
FCAR	2204	broad.mit.edu	37	chr19	55399710	55399710	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggttggctgtccagggcCttgccaccgggcaggaatat	15	11	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55399710	A	A	55399710	1	1	189	0	1	0	0	0	0	0	0	0	5830	681	24	2		2	FCAR	19	55399710	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	136082	55399710	3729273	963	151500											
NLRP2	55655	broad.mit.edu	37	chr19	55496621	55496622	+	Intron	DNP	GG	AA	AA													ttcatgaactcaaatccttaGggtatgaaaatggtacaatg							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55496622	AA	AA	55496621	1	1	189	0	1	0	0	0	0	0	0	0	10572	1015	35	4		4	NLRP2	19	55496621	Intron	DNP	GG	TCGA-64-5778-01A-01D-1625-08	96911	55496621	3632362	964	151501											
ISOC2	79763	broad.mit.edu	37	chr19	55967071	55967071	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggggccgactgtccagctCctgctgcagggcaggcacca	14	15	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55967071	A	A	55967071	4	1	189	1	0	0	0	0	0	1	0	0	7933	864	30	3	401	3	ISOC2	19	55967071	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	470450	55967071	3161912	965	151502											
NLRP8	126205	broad.mit.edu	37	chr19	56482107	56482107	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttgtggttgtggttgtggTggttgtttggtagatttagt	18	0	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56482107	A	A	56482107	1	1	189	0	1	0	0	0	0	0	0	0	10578	1711	59	5		5	NLRP8	19	56482107	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	515036	56482107	2646876	966	151503											
NLRP8	126205	broad.mit.edu	37	chr19	56499156	56499156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaataacctcaaccagCagccttcctttacctccctc	3	17	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56499156	A	A	56499156	1	1	189	0	1	0	0	0	0	0	0	0	10578	725	25	3		3	NLRP8	19	56499156	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	17049	56499156	2629827	967	151504											
ZIM3	114026	broad.mit.edu	37	chr19	57646434	57646434	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggatgaaggtttttccaCattcactacatctataggtc	7	10	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57646434	A	A	57646434	3	1	189	1	0	0	0	0	1	0	0	0	17811	478	17	3	151	3	ZIM3	19	57646434	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1147278	57646434	1482549	968	151505											
ZNF304	57343	broad.mit.edu	37	chr19	57869299	57869299	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctcataggactcacaccaGagcaatgctctgtgagtacc	8	13	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57869299	T	T	57869299	1	4	189	0	1	0	0	0	0	0	0	0	17959	957	33	3		3	ZNF304	19	57869299	3'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	222865	57869299	1259684	969	151506											
ZNF211	10520	broad.mit.edu	37	chr19	58152597	58152597	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacacacttgttcaggaccAgagaatcctcactagagaag	9	10	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58152597	T	T	58152597	3	4	189	1	0	0	0	0	1	0	0	0	17893	188	7	5	796	5	ZNF211	19	58152597	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	283298	58152597	976386	970	151507											
ZNF154	7710	broad.mit.edu	37	chr19	58213094	58213094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcataaggcttctccccaGtgtgaaccctcctgtgctta	7	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58213094	T	T	58213094	3	4	189	1	0	0	0	0	1	0	0	0	17861	1029	36	3	94	3	ZNF154	19	58213094	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	60497	58213094	915889	971	151508											
ZNF417	147687	broad.mit.edu	37	chr19	58420582	58420582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagatttcccacattccCcacagtgataagctctctct	5	13	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58420582	A	A	58420582	3	1	189	1	0	0	0	0	1	0	0	0	18021	623	22	2	667	2	ZNF417	19	58420582	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	207488	58420582	708401	972	151509											
A1BG	1	broad.mit.edu	37	chr19	58863972	58863972	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcataacaggagacgtggGaagcccagcagaacctgggc	14	11	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58863972	A	A	58863972	1	1	189	0	1	0	0	0	0	0	0	0	1	1189	41	4		4	A1BG	19	58863972	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	443390	58863972	265011	973	151510											
ATRN	8455	broad.mit.edu	37	chr20	3584857	3584857	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattttcgcaaccacccaaAtatcactttctttgtttatg	4	10	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3584857	G	G	3584857	3	3	189	1	0	0	0	0	1	0	0	0	1210	101	4	5	3843	5	ATRN	20	3584857	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08		3584857	59440663	974	151511											
ADAM33	80332	broad.mit.edu	37	chr20	3655206	3655206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgctttgttcccaggatccCtgtggccacaggttcctttc	9	15	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3655206	A	A	3655206	3	1	189	1	0	0	0	0	1	0	0	0	250	681	24	2	1964	2	ADAM33	20	3655206	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	70349	3655206	59370314	975	151512											
HSPA12B	116835	broad.mit.edu	37	chr20	3726710	3726710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcgggcccgagaacactGctcaggaagggccaggcctg	16	13	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3726710	T	T	3726710	1	4	189	0	1	0	0	0	0	0	0	0	7474	1334	46	3		3	HSPA12B	20	3726710	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	71504	3726710	59298810	976	151513											
ESF1	51575	broad.mit.edu	37	chr20	13698190	13698190	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaaaaaagttcaaatgTacaacagtgcttttttttcc	5	7	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13698190	A	A	13698190	1	1	189	0	1	0	0	0	0	0	0	0	5293	1653	57	5		5	ESF1	20	13698190	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	9971480	13698190	49327330	977	151514											
ESF1	51575	broad.mit.edu	37	chr20	13755882	13755882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttgcctttaatctatccCagtccatgttacaaactgct	4	12	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13755882	A	A	13755882	3	1	189	1	0	0	0	0	1	0	0	0	5293	595	21	2	1529	2	ESF1	20	13755882	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	57692	13755882	49269638	978	151515											
CSRP2BP	57325	broad.mit.edu	37	chr20	18162538	18162538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtgtgtcatgagggataAtgattgtggtttctgtgccc	14	6	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18162538	G	G	18162538	1	3	189	0	1	0	0	0	0	0	0	0	4002	116	4	5		5	CSRP2BP	20	18162538	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	4406656	18162538	44862982	979	151516											
DEFB118	117285	broad.mit.edu	37	chr20	29960641	29960641	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtaacccaaaatcaatggtCtttccttttattattcagcc	4	10	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29960641	A	A	29960641	1	1	189	0	1	0	0	0	0	0	0	0	4445	928	32	3		3	DEFB118	20	29960641	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	11798103	29960641	33064879	980	151517											
HM13	81502	broad.mit.edu	37	chr20	30142535	30142535	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgactcctcacattcccGcctcccgcttcagtggtgtt	8	16	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30142535	A	A	30142535	1	1	189	0	1	0	0	0	0	0	0	0	7284	1102	38	4		4	HM13	20	30142535	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	181894	30142535	32882985	981	151518											
HCK	3055	broad.mit.edu	37	chr20	30662601	30662601	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaactcaggacgtctgcaCacactgtaccactgcctggc	9	15	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30662601	T	T	30662601	1	4	189	0	1	0	0	0	0	0	0	0	7060	493	17	4		4	HCK	20	30662601	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	520066	30662601	32362919	982	151519											
DNMT3B	1789	broad.mit.edu	37	chr20	31375284	31375284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagaggggctcctgcccaGggtgactgaggaccctgaac	15	13	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31375284	T	T	31375284	1	4	189	0	1	0	0	0	0	0	0	0	4717	1015	35	2		2	DNMT3B	20	31375284	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	712683	31375284	31650236	983	151520											
BPI	671	broad.mit.edu	37	chr20	36937164	36937165	+	Intron	DNP	GC	TG	TG													aaacctaagccactccagttGcctacatatctgccaagcct							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	36937165	TG	TG	36937164	1	4	189	0	1	0	0	0	0	0	0	0	1499	1334	46	3		3	BPI	20	36937164	Intron	DNP	GC	TCGA-64-5778-01A-01D-1625-08	5561880	36937164	26088356	984	151521											
LBP	3929	broad.mit.edu	37	chr20	37000013	37000013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaatgttaattaatttgGggtgtttcctaagcaattgc	9	4	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37000013	T	T	37000013	1	4	189	0	1	0	0	0	0	0	0	0	8723	1247	43	2		2	LBP	20	37000013	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	62849	37000013	26025507	985	151522											
ADA	100	broad.mit.edu	37	chr20	43248977	43248977	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcatcccataggctttataGagcaggtcgagaagctccct	11	11	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43248977	T	T	43248977	2	4	189	1	0	0	0	0	0	0	0	1	230	929	33	3		3	ADA	20	43248977	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	6248964	43248977	19776543	986	151523											
SLC2A10	81031	broad.mit.edu	37	chr20	45358045	45358045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggactgaccgctgtcctcGgcctgggcttcatctattta	10	13	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45358045	T	T	45358045	3	4	189	1	0	0	0	0	1	0	0	0	14653	1116	39	1	1479	1	SLC2A10	20	45358045	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2109068	45358045	17667475	987	151524											
SLC2A10	81031	broad.mit.edu	37	chr20	45362406	45362406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgacaggttcaccctgaGctttggccacaggcagaact	11	12	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45362406	T	T	45362406	3	4	189	1	0	0	0	0	1	0	0	0	14653	971	34	3	1577	3	SLC2A10	20	45362406	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	4361	45362406	17663114	988	151525											
ZMYND8	23613	broad.mit.edu	37	chr20	45850047	45850047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaggtgctgattgtgtgCtcgaggagctcccctgggag	16	9	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45850047	A	A	45850047	3	1	189	1	0	0	0	0	1	0	0	0	17837	797	28	3	385	3	ZMYND8	20	45850047	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	487641	45850047	17175473	989	151526											
ATP9A	10079	broad.mit.edu	37	chr20	50217734	50217734	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgccaagaccagggccccctCcagcgaacgcacggcctatg	11	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50217734	A	A	50217734	1	1	189	0	1	0	0	0	0	0	0	0	1202	870	30	3		3	ATP9A	20	50217734	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	4367687	50217734	12807786	990	151527											
BMP7	655	broad.mit.edu	37	chr20	55803293	55803293	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatagcacccacctgcccaaGtgctcctggagcacctgata	8	15	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55803293	A	A	55803293	2	1	189	1	0	0	0	0	0	0	0	1	1471	1020	36	4		4	BMP7	20	55803293	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	5585559	55803293	7222227	991	151528											
SPO11	23626	broad.mit.edu	37	chr20	55904873	55904873	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgcagccacgccccaagGgcgcagcctaggacaggggc	15	16	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904873	T	T	55904873	1	4	189	0	1	0	0	0	0	0	0	0	15195	1247	43	2		2	SPO11	20	55904873	5'UTR	SNP	G	TCGA-64-5778-01A-01D-1625-08	101580	55904873	7120647	992	151529											
C20orf85	128602	broad.mit.edu	37	chr20	56728599	56728599	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggaactttctttttcaGgaaataccgtctgaaggctg	9	9	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56728599	T	T	56728599	5	4	189	1	0	0	0	0	0	0	1	0	2142	1014	35	2	74	2	C20orf85	20	56728599	Splice_Site	SNP	G	TCGA-64-5778-01A-01D-1625-08	823726	56728599	6296921	993	151530											
GNAS	2778	broad.mit.edu	37	chr20	57429321	57429321	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccccaatcgcgcttgacgGcccgcccatcaaggtctccg	9	20	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57429321	T	T	57429321	3	4	189	1	0	0	0	0	1	0	0	0	6574	1203	42	3	1745	3	GNAS	20	57429321	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	700722	57429321	5596199	994	151531											
GNAS	2778	broad.mit.edu	37	chr20	57430039	57430039	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggggtggccagcagcgaCgatgactccagcggagacga	17	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57430039	T	T	57430039	2	4	189	1	0	0	0	0	0	0	0	1	6574	536	19	4		4	GNAS	20	57430039	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	718	57430039	5595481	995	151532											
SYCP2	10388	broad.mit.edu	37	chr20	58440418	58440418	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacattaaagtatgattatcCcattttcaaacttagttgac	5	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58440418	G	G	58440418	1	3	189	0	1	0	0	0	0	0	0	0	15551	638	22	4		4	SYCP2	20	58440418	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1010379	58440418	4585102	996	151533											
C20orf20	55257	broad.mit.edu	37	chr20	61431163	61431163	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtggccgtcagcggggaaAcgtgtgtgtcagttggacca	16	9	2	0	rs116883192	by1000genomes	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61431163	T	T	61431163	1	4	189	0	1	0	0	0	0	0	0	0	2125	58	2	5		5	C20orf20	20	61431163	3'UTR	SNP	A	TCGA-64-5778-01A-01D-1625-08	2990745	61431163	1594357	997	151534											
COL9A3	1299	broad.mit.edu	37	chr20	61458578	61458578	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaactctgtccctgccccaCctcatcctttccagggtgac	6	17	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61458578	A	A	61458578	1	1	189	0	1	0	0	0	0	0	0	0	3741	522	18	3		3	COL9A3	20	61458578	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	27415	61458578	1566942	998	151535											
PRPF6	24148	broad.mit.edu	37	chr20	62659949	62659949	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgccccgactccggtaaGggggtgccctgactccggta	16	13	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62659949	T	T	62659949	1	4	189	0	1	0	0	0	0	0	0	0	12680	1015	35	2		2	PRPF6	20	62659949	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1201371	62659949	365571	999	151536											
TPTE	7179	broad.mit.edu	37	chr21	10916317	10916317	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagcaaaaccctcccagaGtggggacattggccctcctg	11	13	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10916317	A	A	10916317	1	1	189	0	1	0	0	0	0	0	0	0	16554	1044	36	4		4	TPTE	21	10916317	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08		10916317	37213578	1000	151537											
TPTE	7179	broad.mit.edu	37	chr21	10934019	10934019	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagccctcttctgatagtCaatttagcataaaacttact	4	9	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934019	A	A	10934019	1	1	189	0	1	0	0	0	0	0	0	0	16554	841	29	3		3	TPTE	21	10934019	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	17702	10934019	37195876	1001	151538											
BAGE2	85319	broad.mit.edu	37	chr21	11098762	11098762	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccagccccactcctaCcgctcaggccgccctcctaa	6	22	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11098762	A	A	11098762	1	1	189	0	1	0	0	0	0	0	0	0	1297	522	18	3		3	BAGE2	21	11098762	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	164743	11098762	37031133	1002	151539											
TMPRSS15	5651	broad.mit.edu	37	chr21	19698982	19698982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttccctctgccagacgtaGggctacatgttacatggctc	10	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19698982	T	T	19698982	1	4	189	0	1	0	0	0	0	0	0	0	16369	1015	35	2		2	TMPRSS15	21	19698982	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	8600220	19698982	28430913	1003	151540											
NCAM2	4685	broad.mit.edu	37	chr21	22804541	22804541	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctattcatcactatcagGtggatgtcaaagaagtagcg	9	8	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22804541	T	T	22804541	3	4	189	1	0	0	0	0	1	0	0	0	10298	1261	44	3	1640	3	NCAM2	21	22804541	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	3105559	22804541	25325354	1004	151541											
JAM2	58494	broad.mit.edu	37	chr21	27084702	27084702	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgagtgaaaatgtgagtaTctttaaagcatatttataga	8	2	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27084702	C	C	27084702	1	2	189	0	1	0	0	0	0	0	0	0	8013	1450	50	5		5	JAM2	21	27084702	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	4280161	27084702	21045193	1005	151542											
APP	351	broad.mit.edu	37	chr21	27254054	27254054	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcatcttggacaggtggCgctcctctggggtgacagcg	16	11	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27254054	G	G	27254054	3	3	189	1	0	0	0	0	1	0	0	0	817	768	27	4	76	4	APP	21	27254054	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	169352	27254054	20875841	1006	151543											
CYYR1	116159	broad.mit.edu	37	chr21	27945363	27945363	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcagcgctcctgagagcCgggtggagcagagacccggc	17	12	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27945363	A	A	27945363	1	1	189	0	1	0	0	0	0	0	0	0	4244	667	23	1		1	CYYR1	21	27945363	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	691309	27945363	20184532	1007	151544											
ADAMTS5	11096	broad.mit.edu	37	chr21	28307118	28307118	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgtttaggtttcaaacCgctaaaatcatggatctaaa	7	7	4	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28307118	G	G	28307118	1	3	189	0	1	0	0	0	0	0	0	0	269	667	23	4		4	ADAMTS5	21	28307118	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	361755	28307118	19822777	1008	151545											
CLDN8	9073	broad.mit.edu	37	chr21	31588044	31588044	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagagccagcagggaatcaTagattttgcactgcatcctg	10	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31588044	C	C	31588044	3	2	189	1	0	0	0	0	1	0	0	0	3523	1406	49	5	481	5	CLDN8	21	31588044	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	3280926	31588044	16541851	1009	151546											
KRTAP13-1	140258	broad.mit.edu	37	chr21	31768427	31768427	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcctacaactgctgctctgGaaacttctcctcccgctcct	6	17	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31768427	A	A	31768427	3	1	189	1	0	0	0	0	1	0	0	0	8593	1174	41	4	25	4	KRTAP13-1	21	31768427	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	180383	31768427	16361468	1010	151547											
KRTAP19-6	337973	broad.mit.edu	37	chr21	31914037	31914037	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcagcagccatatctaTagcctccatagccagagcca	10	14	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31914037	C	C	31914037	3	2	189	1	0	0	0	0	1	0	0	0	8604	1406	49	5	64	5	KRTAP19-6	21	31914037	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	145610	31914037	16215858	1011	151548											
TIAM1	7074	broad.mit.edu	37	chr21	32575214	32575214	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgcttggacaacagtcAtaacattaccagctcataga	8	9	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32575214	G	G	32575214	1	3	189	0	1	0	0	0	0	0	0	0	16013	232	8	5		5	TIAM1	21	32575214	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	661177	32575214	15554681	1012	151549											
GART	2618	broad.mit.edu	37	chr21	34889378	34889378	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaatatgggcaaaggctttGacatgtcctgaacgtaggac	12	7	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34889378	A	A	34889378	2	1	189	1	0	0	0	0	0	0	0	1	6305	1277	45	4		4	GART	21	34889378	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	2314164	34889378	13240517	1013	151550											
DOPEY2	9980	broad.mit.edu	37	chr21	37665644	37665644	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtagctctgatgagatcacCatgaagagtgaattcccgct	10	9	2	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37665644	T	T	37665644	2	4	189	1	0	0	0	0	0	0	0	1	4748	581	21	4		4	DOPEY2	21	37665644	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	2776266	37665644	10464251	1014	151551											
TTC3	7267	broad.mit.edu	37	chr21	38507791	38507791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttacagagttgctgaacGgtttagatcctcaaaaaata	7	8	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38507791	T	T	38507791	3	4	189	1	0	0	0	0	1	0	0	0	16823	1116	39	1	1621	1	TTC3	21	38507791	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	842147	38507791	9622104	1015	151552											
KCNJ15	3772	broad.mit.edu	37	chr21	39672177	39672177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatttcagtcagtttgaaCagattcggaaaagcccagat	9	8	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39672177	A	A	39672177	3	1	189	1	0	0	0	0	1	0	0	0	8119	479	17	3	996	3	KCNJ15	21	39672177	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1164386	39672177	8457718	1016	151553											
TMPRSS2	7113	broad.mit.edu	37	chr21	42866466	42866466	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggttttccggttggtatcCatggttttcatagtaaggtc	13	6	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42866466	A	A	42866466	4	1	189	1	0	0	0	0	0	1	0	0	16370	603	21	2	1471	2	TMPRSS2	21	42866466	Nonsense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3194289	42866466	5263429	1017	151554											
UMODL1	89766	broad.mit.edu	37	chr21	43531679	43531679	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctactgaggaccccaccggcCacttcctgtggcatgccacc	9	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43531679	T	T	43531679	3	4	189	1	0	0	0	0	1	0	0	0	17106	594	21	4	2389	4	UMODL1	21	43531679	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	665213	43531679	4598216	1018	151555											
UMODL1	89766	broad.mit.edu	37	chr21	43557471	43557471	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcagatccatcagccccgGatccgggtggagggcttgct	13	13	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43557471	T	T	43557471	1	4	189	0	1	0	0	0	0	0	0	0	17106	1189	41	3		3	UMODL1	21	43557471	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	25792	43557471	4572424	1019	151556											
PDE9A	5152	broad.mit.edu	37	chr21	44108133	44108133	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccggccgcgctcctcgggGtgtgcctggcacttctctcc	12	18	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44108133	A	A	44108133	1	1	189	0	1	0	0	0	0	0	0	0	11749	1276	44	4		4	PDE9A	21	44108133	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	550662	44108133	4021762	1020	151557											
C21orf29	54084	broad.mit.edu	37	chr21	45941951	45941951	+	Frame_Shift_Del	DEL	C	-	-													ggcctcgaagagccgggttgCcgggttccacttgtagatga							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45941951	-	-	45941951	7	5	189	1	0	1	0	1	0	0	0	0	2146	739	26	0	644	0	C21orf29	21	45941951	Frame_Shift_Del	DEL	C	TCGA-64-5778-01A-01D-1625-08	1833818	45941951	2187944	1021	151558											
PCBP3	54039	broad.mit.edu	37	chr21	47361419	47361419	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcggggaccagggcggggaaGaggcctgtgtgctctgctgt	20	9	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47361419	T	T	47361419	1	4	189	0	1	0	0	0	0	0	0	0	11596	957	33	3		3	PCBP3	21	47361419	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1419468	47361419	768476	1022	151559											
COL6A1	1291	broad.mit.edu	37	chr21	47409475	47409475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggtgggactggcccctGcccctgctcctccgggggtg	17	15	0	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47409475	T	T	47409475	1	4	189	0	1	0	0	0	0	0	0	0	3731	1334	46	3		3	COL6A1	21	47409475	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	48056	47409475	720420	1023	151560											
POTEH	23784	broad.mit.edu	37	chr22	16287736	16287736	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcttcatagcagaatcGtcgtggtctccagaagtgcc	11	10	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287736	T	T	16287736	3	4	189	1	0	0	0	0	1	0	0	0	12363	1136	40	3	1527	3	POTEH	22	16287736	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08		16287736	35016830	1024	151561											
CLTCL1	8218	broad.mit.edu	37	chr22	19230452	19230452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcattgctccaaccacaCggttttgctaagaaaagata	8	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19230452	A	A	19230452	3	1	189	1	0	0	0	0	1	0	0	0	3599	536	19	3	4511	3	CLTCL1	22	19230452	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2942716	19230452	32074114	1025	151562											
ZNF74	7625	broad.mit.edu	37	chr22	20761064	20761064	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagaggctgcacagcgagGggaagcccttggccatccag	14	13	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20761064	T	T	20761064	3	4	189	1	0	0	0	0	1	0	0	0	18256	1232	43	2	1759	2	ZNF74	22	20761064	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	1530612	20761064	30543502	1026	151563											
PPIL2	23759	broad.mit.edu	37	chr22	22029254	22029254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagagctgcacagggttGgcctagtcagagacttttcc	12	11	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22029254	T	T	22029254	1	4	189	0	1	0	0	0	0	0	0	0	12428	1363	47	2		2	PPIL2	22	22029254	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1268190	22029254	29275312	1027	151564											
GNAZ	2781	broad.mit.edu	37	chr22	23437951	23437951	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagaattgaccgccacctGcgctcagagagccagcggca	13	14	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23437951	T	T	23437951	2	4	189	1	0	0	0	0	0	0	0	1	6578	1306	46	3		3	GNAZ	22	23437951	Silent	SNP	G	TCGA-64-5778-01A-01D-1625-08	1408697	23437951	27866615	1028	151565											
OSM	5008	broad.mit.edu	37	chr22	30660402	30660402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggggaaggccccggggcGctccctgcagtgctctctca	14	15	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30660402	T	T	30660402	3	4	189	1	0	0	0	0	1	0	0	0	11385	1087	38	3	533	3	OSM	22	30660402	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	7222451	30660402	20644164	1029	151566											
GATSL3	652968	broad.mit.edu	37	chr22	30683037	30683038	+	Intron	DNP	CC	AA	AA													ccaggggcaggtcttgctatCcaggaactggccggggtcct							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	30683038	AA	AA	30683037	1	1	189	0	1	0	0	0	0	0	0	0	6327	870	30	3		3	GATSL3	22	30683037	Intron	DNP	CC	TCGA-64-5778-01A-01D-1625-08	22635	30683037	20621529	1030	151567											
TCN2	6948	broad.mit.edu	37	chr22	31007170	31007170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggcaaattttctccatctAtagaatggaggacctttgtc	8	8	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31007170	G	G	31007170	1	3	189	0	1	0	0	0	0	0	0	0	15829	464	16	5		5	TCN2	22	31007170	Intron	SNP	A	TCGA-64-5778-01A-01D-1625-08	324133	31007170	20297396	1031	151568											
C22orf30	253143	broad.mit.edu	37	chr22	32100842	32100842	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtcagttactcagaaagaGgaaagctttccaaccaggag	10	8	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32100842	A	A	32100842	1	1	189	0	1	0	0	0	0	0	0	0	2164	1015	35	4		4	C22orf30	22	32100842	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1093672	32100842	19203724	1032	151569											
CSF2RB	1439	broad.mit.edu	37	chr22	37333941	37333941	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccctgtggctatacccatGagctctggggacactgagga	13	11	1	2	rs138676111		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37333941	A	A	37333941	3	1	189	1	0	0	0	0	1	0	0	0	3969	1290	45	4	2141	4	CSF2RB	22	37333941	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5233099	37333941	13970625	1033	151570											
TMPRSS6	164656	broad.mit.edu	37	chr22	37494373	37494373	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgctccagatgggttgacCaactggctccatgtgatcag	11	10	1	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37494373	A	A	37494373	1	1	189	0	1	0	0	0	0	0	0	0	16374	609	21	2		2	TMPRSS6	22	37494373	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	160432	37494373	13810193	1034	151571											
KDELR3	11015	broad.mit.edu	37	chr22	38878549	38878549	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgccaatctgaggaccttCagagacagtctacgccttaa	8	11	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38878549	G	G	38878549	1	3	189	0	1	0	0	0	0	0	0	0	8191	841	29	4		4	KDELR3	22	38878549	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	1384176	38878549	12426017	1035	151572											
NFAM1	150372	broad.mit.edu	37	chr22	42805469	42805469	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcagcagggccgtgcccActacactcaggacactcagg	12	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42805469	T	T	42805469	3	4	189	1	0	0	0	0	1	0	0	0	10453	159	6	5	292	5	NFAM1	22	42805469	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	3926920	42805469	8499097	1036	151573											
GTSE1	51512	broad.mit.edu	37	chr22	46704833	46704833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagcatccctggggctgCggagaaggtaaatgccacag	14	9	0	2	rs147669373	byFrequency	TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46704833	A	A	46704833	3	1	189	1	0	0	0	0	1	0	0	0	6950	768	27	3	765	3	GTSE1	22	46704833	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3899364	46704833	4599733	1037	151574											
MIOX	55586	broad.mit.edu	37	chr22	50926233	50926233	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccctcagccccatgagcCcaccaggcgccgaggggatg	13	16	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50926233	T	T	50926233	1	4	189	0	1	0	0	0	0	0	0	0	9683	638	22	4		4	MIOX	22	50926233	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	4221400	50926233	378333	1038	151575											
SHOX	6473	broad.mit.edu	37	chrX	601706	601706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctacacccaggaccaccaCactgacacctgctccctttg	7	18	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	601706	A	A	601706	1	1	189	0	1	0	0	0	0	0	0	0	14401	493	17	3		3	SHOX	23	601706	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08		601706	154668854	1039	151576											
P2RY8	286530	broad.mit.edu	37	chrX	1585496	1585496	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaagggaaggagggaagGgtgtacgggtcaggggcgca	21	6	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1585496	T	T	1585496	1	4	189	0	1	0	0	0	0	0	0	0	11449	1247	43	2		2	P2RY8	23	1585496	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	983790	1585496	153685064	1040	151577											
NLGN4X	57502	broad.mit.edu	37	chrX	5821830	5821830	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtctgccaatatccgagTgtacttggccggctggtagt	12	10	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5821830	A	A	5821830	3	1	189	1	0	0	0	0	1	0	0	0	10559	1696	59	5	1569	5	NLGN4X	23	5821830	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	4236334	5821830	149448730	1041	151578											
BEND2	139105	broad.mit.edu	37	chrX	18238809	18238810	+	Intron	DNP	CC	AA	AA													ctcttgacagaacttgaggcCcaagctagcgggccagttga							TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18238810	AA	AA	18238809	1	1	189	0	1	0	0	0	0	0	0	0	1403	638	22	2		2	BEND2	23	18238809	Intron	DNP	CC	TCGA-64-5778-01A-01D-1625-08	12416979	18238809	137031751	1042	151579											
PPEF1	5475	broad.mit.edu	37	chrX	18845335	18845335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcagtgtgggttccccaaCccttgccttaggtgggtctt	11	11	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18845335	A	A	18845335	1	1	189	0	1	0	0	0	0	0	0	0	12403	522	18	3		3	PPEF1	23	18845335	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	606526	18845335	136425225	1043	151580											
DMD	1756	broad.mit.edu	37	chrX	32361412	32361412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctcaaatcctgttcatGgtgcagacattattaaaata	6	8	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32361412	T	T	32361412	1	4	189	0	1	0	0	0	0	0	0	0	4620	1363	47	2		2	DMD	23	32361412	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	13516077	32361412	122909148	1044	151581											
DMD	1756	broad.mit.edu	37	chrX	32430028	32430028	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaacttttgcctccttacAgcctaaaaagaaggaataag	7	9	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32430028	T	T	32430028	2	4	189	1	0	0	0	0	0	0	0	1	4620	175	7	5		5	DMD	23	32430028	Silent	SNP	A	TCGA-64-5778-01A-01D-1625-08	68616	32430028	122840532	1045	151582											
FAM47B	170062	broad.mit.edu	37	chrX	34962859	34962859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttacaagtacaaagaagaCgtcacagatgcatcaaaaga	8	7	2	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34962859	A	A	34962859	3	1	189	1	0	0	0	0	1	0	0	0	5621	535	19	3	1913	3	FAM47B	23	34962859	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2532831	34962859	120307701	1046	151583											
CXorf59	286464	broad.mit.edu	37	chrX	36156446	36156446	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attccattaccaaaaggtttGatttttttttttttacagat	4	5	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36156446	A	A	36156446	1	1	189	0	1	0	0	0	0	0	0	0	4148	1305	45	4		4	CXorf59	23	36156446	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	1193587	36156446	119114114	1047	151584											
CASK	8573	broad.mit.edu	37	chrX	41646364	41646364	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaaatttcaagagaaaagTgttagcattatccaacacca	6	8	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41646364	A	A	41646364	1	1	189	0	1	0	0	0	0	0	0	0	2691	1711	59	5		5	CASK	23	41646364	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	5489918	41646364	113624196	1048	151585											
OTUD5	55593	broad.mit.edu	37	chrX	48780398	48780398	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagaaggtgaggtggcacCggagagcaggagtactgggg	19	6	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48780398	T	T	48780398	1	4	189	0	1	0	0	0	0	0	0	0	11409	667	23	4		4	OTUD5	23	48780398	3'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	7134034	48780398	106490162	1049	151586											
CACNA1F	778	broad.mit.edu	37	chrX	49065117	49065117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaatcccggagccccggcGagctgagggctgggagacca	16	12	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49065117	T	T	49065117	3	4	189	1	0	0	0	0	1	0	0	0	2569	1058	37	3	943	3	CACNA1F	23	49065117	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	284719	49065117	106205443	1050	151587											
PPP1R3F	89801	broad.mit.edu	37	chrX	49142326	49142326	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccgatgactggcaaccccGcagaagaaggtgatgtcccc	11	13	0	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49142326	A	A	49142326	3	1	189	1	0	0	0	0	1	0	0	0	12476	1087	38	4	1188	4	PPP1R3F	23	49142326	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	77209	49142326	106128234	1051	151588											
SSX7	280658	broad.mit.edu	37	chrX	52685548	52685548	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtcctcctcggaaaggcCttttctgggggctgatactc	11	11	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52685548	A	A	52685548	1	1	189	0	1	0	0	0	0	0	0	0	15327	696	24	2		2	SSX7	23	52685548	5'Flank	SNP	C	TCGA-64-5778-01A-01D-1625-08	3543222	52685548	102585012	1052	151589											
HUWE1	10075	broad.mit.edu	37	chrX	53642720	53642720	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctaccttgatgatggcagtCgttgcatctgttttaagggt	11	7	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53642720	A	A	53642720	2	1	189	1	0	0	0	0	0	0	0	1	7531	871	31	3		3	HUWE1	23	53642720	Silent	SNP	C	TCGA-64-5778-01A-01D-1625-08	957172	53642720	101627840	1053	151590											
HUWE1	10075	broad.mit.edu	37	chrX	53643940	53643940	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taacaacttaccaaggggatCagaacttctcctcctccgca	6	14	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53643940	T	T	53643940	3	4	189	1	0	0	0	0	1	0	0	0	7531	826	29	4	11432	4	HUWE1	23	53643940	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1220	53643940	101626620	1054	151591											
ALAS2	212	broad.mit.edu	37	chrX	55051146	55051146	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcataaggtggaacttgactCcaacctgtcttgaaagcctt	9	10	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55051146	T	T	55051146	1	4	189	0	1	0	0	0	0	0	0	0	485	870	30	4		4	ALAS2	23	55051146	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1407206	55051146	100219414	1055	151592											
FAAH2	158584	broad.mit.edu	37	chrX	57419578	57419578	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggcagccgatgaggtcCagctcagtctctgtatctgt	12	10	3	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57419578	T	T	57419578	1	4	189	0	1	0	0	0	0	0	0	0	5400	609	21	4		4	FAAH2	23	57419578	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	2368432	57419578	97850982	1056	151593											
PDZD11	51248	broad.mit.edu	37	chrX	69507686	69507686	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agagtcaggaatcacctgttGgtaaagagagaatacatgtg	12	5	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69507686	C	C	69507686	1	2	189	0	1	0	0	0	0	0	0	0	11794	1363	47	4		4	PDZD11	23	69507686	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	12088108	69507686	85762874	1057	151594											
KIF4A	24137	broad.mit.edu	37	chrX	69622523	69622523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattctggaagccaagtgtgCcctgaaatatttgattggag	11	7	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69622523	A	A	69622523	3	1	189	1	0	0	0	0	1	0	0	0	8373	739	26	3	2683	3	KIF4A	23	69622523	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	114837	69622523	85648037	1058	151595											
TBX22	50945	broad.mit.edu	37	chrX	79278703	79278703	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtggaaaagattccatgAcatcgggactgagatgatca	11	7	1	4			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79278703	G	G	79278703	3	3	189	1	0	0	0	0	1	0	0	0	15780	275	10	5	326	5	TBX22	23	79278703	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	9656180	79278703	75991857	1059	151596											
POU3F4	5456	broad.mit.edu	37	chrX	82763299	82763299	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaagctgctccctttgCcacattataactagtagggg	11	10	0	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82763299	T	T	82763299	1	4	189	0	1	0	0	0	0	0	0	0	12373	754	26	4		4	POU3F4	23	82763299	5'UTR	SNP	C	TCGA-64-5778-01A-01D-1625-08	3484596	82763299	72507261	1060	151597											
CYLC1	1538	broad.mit.edu	37	chrX	83129059	83129059	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagtctactgatgctgactCtgaaccgaagggagattcaa	11	8	3	5			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83129059	A	A	83129059	3	1	189	1	0	0	0	0	1	0	0	0	4174	913	32	3	1357	3	CYLC1	23	83129059	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	365760	83129059	72141501	1061	151598											
DACH2	117154	broad.mit.edu	37	chrX	85950089	85950089	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgcacctggaccccaaCatggaattgctcatgcagcc	9	14	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85950089	A	A	85950089	3	1	189	1	0	0	0	0	1	0	0	0	4254	478	17	3	856	3	DACH2	23	85950089	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2821030	85950089	69320471	1062	151599											
PCDH11X	27328	broad.mit.edu	37	chrX	91133828	91133828	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaaacccagaaaacaggcaGatgataatgatgaagaaaaa	8	7	0	6			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91133828	T	T	91133828	3	4	189	1	0	0	0	0	1	0	0	0	11602	933	33	3	2595	3	PCDH11X	23	91133828	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5183739	91133828	64136732	1063	151600											
NXF2B	728343	broad.mit.edu	37	chrX	101576829	101576829	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatcacggctcagaccctGctctggggctgtgtgtctcc	12	13	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101576829	A	A	101576829	1	1	189	0	1	0	0	0	0	0	0	0	10879	1334	46	4		4	NXF2B	23	101576829	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	10443001	101576829	53693731	1064	151601											
TMSB15B	286527	broad.mit.edu	37	chrX	103216366	103216366	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaccagcaagaaaaaaaGgtgcaagaataagatttatg	8	4	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103216366	T	T	103216366	1	4	189	0	1	0	0	0	0	0	0	0	16379	1015	35	2		2	TMSB15B	23	103216366	5'Flank	SNP	G	TCGA-64-5778-01A-01D-1625-08	1639537	103216366	52054194	1065	151602											
COL4A5	1287	broad.mit.edu	37	chrX	107936239	107936239	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaaagctaacaatctgatGatattcctcctaggttaggt	7	9	1	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107936239	T	T	107936239	1	4	189	0	1	0	0	0	0	0	0	0	3726	1305	45	3		3	COL4A5	23	107936239	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4719873	107936239	47334321	1066	151603											
CHRDL1	91851	broad.mit.edu	37	chrX	109919543	109919543	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatacacgacttgaacaCatctggctgatctgagcttc	8	12	2	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109919543	G	G	109919543	3	3	189	1	0	0	0	0	1	0	0	0	3404	478	17	4	87	4	CHRDL1	23	109919543	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	1983304	109919543	45351017	1067	151604											
UPF3B	65109	broad.mit.edu	37	chrX	118979178	118979178	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccatcatcgatagtcccgActttggtatctcttttctta	5	11	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118979178	C	C	118979178	3	2	189	1	0	0	0	0	1	0	0	0	17132	275	10	5	1031	5	UPF3B	23	118979178	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08	9059635	118979178	36291382	1068	151605											
ODZ1	10178	broad.mit.edu	37	chrX	123870797	123870797	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttagtgggatcaataataGctcaagtacctggtctccaa	9	8	3	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123870797	T	T	123870797	1	4	189	0	1	0	0	0	0	0	0	0	10929	986	34	3		3	ODZ1	23	123870797	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	4891619	123870797	31399763	1069	151606											
ARHGAP36	158763	broad.mit.edu	37	chrX	130215841	130215841	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagctgcaagagactgctTaccacgaactcgtggccaga	11	11	0	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130215841	A	A	130215841	3	1	189	1	0	0	0	0	1	0	0	0	885	1754	61	5	204	5	ARHGAP36	23	130215841	Missense_Mutation	SNP	T	TCGA-64-5778-01A-01D-1625-08	6345044	130215841	25054719	1070	151607											
ARHGAP36	158763	broad.mit.edu	37	chrX	130217093	130217093	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggatgttttagtcacttatTaagtcctatttgtaagtgta	9	4	1	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130217093	G	G	130217093	1	3	189	0	1	0	0	0	0	0	0	0	885	1769	61	5		5	ARHGAP36	23	130217093	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	1252	130217093	25053467	1071	151608											
ARHGAP36	158763	broad.mit.edu	37	chrX	130220675	130220675	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcaggcccttgctgaaGgtcagtcccttgttgaaggt	14	9	2	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130220675	C	C	130220675	1	2	189	0	1	0	0	0	0	0	0	0	885	1015	35	4		4	ARHGAP36	23	130220675	Intron	SNP	G	TCGA-64-5778-01A-01D-1625-08	3582	130220675	25049885	1072	151609											
GPR112	139378	broad.mit.edu	37	chrX	135429209	135429209	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaccatttcattcactgaGactctccactcctgtgacag	5	14	3	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135429209	C	C	135429209	3	2	189	1	0	0	0	0	1	0	0	0	6694	942	33	4	3354	4	GPR112	23	135429209	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	5208534	135429209	19841351	1073	151610											
GPR112	139378	broad.mit.edu	37	chrX	135441386	135441386	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtacagaatttctgcatTgcaggccaagttgcactccc	9	12	1	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135441386	C	C	135441386	1	2	189	0	1	0	0	0	0	0	0	0	6694	1827	63	5		5	GPR112	23	135441386	Intron	SNP	T	TCGA-64-5778-01A-01D-1625-08	12177	135441386	19829174	1074	151611											
MAGEC1	9947	broad.mit.edu	37	chrX	140992863	140992863	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtcagagccatcatggGtgagtttctcagctgaggcc	12	10	3	3			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140992863	T	T	140992863	5	4	189	1	0	0	0	0	0	0	1	0	9272	1275	44	3	7	3	MAGEC1	23	140992863	Splice_Site	SNP	G	TCGA-64-5778-01A-01D-1625-08	5551477	140992863	14277697	1075	151612											
MAGEC1	9947	broad.mit.edu	37	chrX	140996099	140996099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccctgagagaagtggaccCtgatgactcctatgtctttg	10	10	1	4	rs143297640		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140996099	A	A	140996099	3	1	189	1	0	0	0	0	1	0	0	0	9272	681	24	2	2915	2	MAGEC1	23	140996099	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	3236	140996099	14274461	1076	151613											
SPANXN3	139067	broad.mit.edu	37	chrX	142605090	142605090	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtttgagccaccccctctCtgtgtgtctttctttcaccc	6	16	4	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142605090	T	T	142605090	1	4	189	0	1	0	0	0	0	0	0	0	15108	928	32	4		4	SPANXN3	23	142605090	Intron	SNP	C	TCGA-64-5778-01A-01D-1625-08	1608991	142605090	12665470	1077	151614											
SLITRK2	84631	broad.mit.edu	37	chrX	144904367	144904367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctggagtatctccaggccGactacaattacatcagtgcc	9	13	2	0			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144904367	T	T	144904367	3	4	189	1	0	0	0	0	1	0	0	0	14857	1058	37	3	426	3	SLITRK2	23	144904367	Missense_Mutation	SNP	G	TCGA-64-5778-01A-01D-1625-08	2299277	144904367	10366193	1078	151615											
IL9R	3581	broad.mit.edu	37	chrX	155233519	155233519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtacctgccccggagacaCggtgagcagcagctataggt	14	11	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155233519	A	A	155233519	3	1	189	1	0	0	0	0	1	0	0	0	7778	550	19	3	446	3	IL9R	23	155233519	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	10329152	155233519	37041	1079	151616											
ZFY	7544	broad.mit.edu	37	chrY	2847526	2847526	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaacacatcagtgtttgcAttgcgaccacaagagttcaa	7	10	2	1			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2847526	C	C	2847526	3	2	189	1	0	0	0	0	1	0	0	0	17788	217	8	5	1924	5	ZFY	24	2847526	Missense_Mutation	SNP	A	TCGA-64-5778-01A-01D-1625-08		2847526	56526040	1080	151617											
PCDH11Y	83259	broad.mit.edu	37	chrY	4967037	4967037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaattactggctgcagatgCtggcaaacctcctttgaatc	8	10	0	2			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4967037	A	A	4967037	3	1	189	1	0	0	0	0	1	0	0	0	11603	797	28	3	1460	3	PCDH11Y	24	4967037	Missense_Mutation	SNP	C	TCGA-64-5778-01A-01D-1625-08	2119511	4967037	54406529	1081	151618											
ACAP3	116983	broad.mit.edu	37	chr1	1233393	1233393	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgggctgggcctcctcacTtggtgggtgacagcacctcg	14	14	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1233393	A	A	1233393	3	1	190	1	0	0	0	0	1	0	0	0	120	1623	56	5	1536	5	ACAP3	1	1233393	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08		1233393	248017228	1	151619											
CHD5	26038	broad.mit.edu	37	chr1	6206117	6206117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcactgggaaccctgggcCcttccttgtgcccctgctgt	11	16	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6206117	A	A	6206117	1	1	190	0	1	0	0	0	0	0	0	0	3359	638	22	2		2	CHD5	1	6206117	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4972724	6206117	243044504	2	151620											
SPSB1	80176	broad.mit.edu	37	chr1	9416181	9416181	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaagctcatctttcaccgGcatccggtggcccagagcac	10	15	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9416181	A	A	9416181	2	1	190	1	0	0	0	0	0	0	0	1	15230	1190	42	4		4	SPSB1	1	9416181	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	3210064	9416181	239834440	3	151621											
MTOR	2475	broad.mit.edu	37	chr1	11319445	11319445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcagcggtggtggcggCggcaggtccggttccaagca	20	10	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11319445	A	A	11319445	3	1	190	1	0	0	0	0	1	0	0	0	10048	768	27	3	7855	3	MTOR	1	11319445	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1903264	11319445	237931176	4	151622											
PTCHD2	57540	broad.mit.edu	37	chr1	11596579	11596579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacgctgaccgtcagcaccGccctgctgggcatcatggcg	12	16	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11596579	A	A	11596579	3	1	190	1	0	0	0	0	1	0	0	0	12839	1087	38	4	4093	4	PTCHD2	1	11596579	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	277134	11596579	237654042	5	151623											
LOC649330	649330	broad.mit.edu	37	chr1	12907513	12907513	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttcacctctacctcttgTttgctctgttccttttcaat	3	12	5	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12907513	G	G	12907513	3	3	190	1	0	0	0	0	1	0	0	0	8969	1722	60	5	255	5	LOC649330	1	12907513	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	1310934	12907513	236343108	6	151624											
NBPF1	55672	broad.mit.edu	37	chr1	16892596	16892596	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acactctgagttagtgccctCgggacacacagagaacagtg	11	11	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16892596	T	T	16892596	1	4	190	0	1	0	0	0	0	0	0	0	10286	899	31	4		4	NBPF1	1	16892596	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3985083	16892596	232358025	7	151625											
NBPF1	55672	broad.mit.edu	37	chr1	16893413	16893413	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagttgtgtgaatttgtcacAtctgcccagatccaacatct	8	10	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16893413	T	T	16893413	1	4	190	0	1	0	0	0	0	0	0	0	10286	232	8	5		5	NBPF1	1	16893413	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	817	16893413	232357208	8	151626											
IGSF21	84966	broad.mit.edu	37	chr1	18704825	18704825	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggagctgacgtgaaggcAcccgccccggccactccatc	11	17	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18704825	C	C	18704825	1	2	190	0	1	0	0	0	0	0	0	0	7669	174	6	5		5	IGSF21	1	18704825	3'UTR	SNP	A	TCGA-64-5779-01A-01D-1625-08	1811412	18704825	230545796	9	151627											
CNKSR1	10256	broad.mit.edu	37	chr1	26515135	26515135	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccatggagacacatcacCtgcagccacccccacacagc	6	20	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26515135	G	G	26515135	3	3	190	1	0	0	0	0	1	0	0	0	3638	681	24	4	1711	4	CNKSR1	1	26515135	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	7810310	26515135	222735486	10	151628											
COL16A1	1307	broad.mit.edu	37	chr1	32149104	32149104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagctccccaaggagaccCtgagggtcagagaggctggg	16	10	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32149104	A	A	32149104	1	1	190	0	1	0	0	0	0	0	0	0	3705	696	24	2		2	COL16A1	1	32149104	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5633969	32149104	217101517	11	151629											
GRIK3	2899	broad.mit.edu	37	chr1	37324541	37324541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatgccataagtttggtcCtatggagcccattttcacac	7	11	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37324541	A	A	37324541	1	1	190	0	1	0	0	0	0	0	0	0	6841	696	24	2		2	GRIK3	1	37324541	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5175437	37324541	211926080	12	151630											
KDM4A	9682	broad.mit.edu	37	chr1	44132826	44132827	+	Intron	INS	-	T	T													gcaaattctggttagatacgINSttggctggtgattagagtat							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44132827	T	T	44132826	6	5	190	0	1	1	1	0	0	0	0	0	8198	1160	40	0		0	KDM4A	1	44132826	Intron	INS	-	TCGA-64-5779-01A-01D-1625-08	6808285	44132826	205117795	13	151631											
DMRTB1	63948	broad.mit.edu	37	chr1	53930612	53930612	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagaaaggttaggtgtggaGagaagggacatggaatttaa	16	1	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53930612	T	T	53930612	1	4	190	0	1	0	0	0	0	0	0	0	4630	957	33	3		3	DMRTB1	1	53930612	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	9797786	53930612	195320009	14	151632											
HSPB11	51668	broad.mit.edu	37	chr1	54395614	54395614	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtttacatatatgccttcTgcctgtggaaaaaatgaaag	8	6	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54395614	C	C	54395614	1	2	190	0	1	0	0	0	0	0	0	0	7488	1595	55	5		5	HSPB11	1	54395614	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	465002	54395614	194855007	15	151633											
WDR78	79819	broad.mit.edu	37	chr1	67299561	67299561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagaaaaaccatgaccaaCccaatttttttcttattggc	4	10	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67299561	A	A	67299561	1	1	190	0	1	0	0	0	0	0	0	0	17455	522	18	3		3	WDR78	1	67299561	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	12903947	67299561	181951060	16	151634											
LRRIQ3	127255	broad.mit.edu	37	chr1	74649254	74649255	+	Frame_Shift_Ins	INS	-	A	A													ttttccatagactttaaatgINSaaggccattgaacttcacaa							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74649255	A	A	74649254	7	5	190	1	0	1	1	0	0	0	0	0	9117	1290	45	0	1787	0	LRRIQ3	1	74649254	Frame_Shift_Ins	INS	-	TCGA-64-5779-01A-01D-1625-08	7349693	74649254	174601367	17	151635											
IFI44L	10964	broad.mit.edu	37	chr1	79107408	79107408	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgccctagtcctgaaAgctacattaggatatatgtt	8	9	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79107408	G	G	79107408	1	3	190	0	1	0	0	0	0	0	0	0	7588	87	3	5		5	IFI44L	1	79107408	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	4458154	79107408	170143213	18	151636											
PRKACB	5567	broad.mit.edu	37	chr1	84610341	84610341	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgttgttttctgattttcAcaaggacattttgcaagatg	8	5	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84610341	G	G	84610341	1	3	190	0	1	0	0	0	0	0	0	0	12604	174	6	5		5	PRKACB	1	84610341	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	5502933	84610341	164640280	19	151637											
PRKACB	5567	broad.mit.edu	37	chr1	84610356	84610356	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcacaaggacattttgcAagatgaagttgaaagaattc	8	5	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84610356	T	T	84610356	1	4	190	0	1	0	0	0	0	0	0	0	12604	145	5	5		5	PRKACB	1	84610356	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	15	84610356	164640265	20	151638											
SAMD13	148418	broad.mit.edu	37	chr1	84815188	84815188	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttccattttggcactaCtacaaatgtaatgtttttag	5	6	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84815188	A	A	84815188	1	1	190	0	1	0	0	0	0	0	0	0	13929	580	20	3		3	SAMD13	1	84815188	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	204832	84815188	164435433	21	151639											
WDR63	126820	broad.mit.edu	37	chr1	85547000	85547000	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagatgaagatgtcacagatGaacaaccttataagcttatc	7	7	1	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85547000	T	T	85547000	4	4	190	1	0	0	0	0	0	1	0	0	17441	1291	45	3	197	3	WDR63	1	85547000	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	731812	85547000	163703621	22	151640											
EVI5	7813	broad.mit.edu	37	chr1	93101784	93101784	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatatccaagactttatccTgcatctcttttaatgcacac	3	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93101784	C	C	93101784	3	2	190	1	0	0	0	0	1	0	0	0	5331	1580	55	5	1006	5	EVI5	1	93101784	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	7554784	93101784	156148837	23	151641											
C1orf103	55791	broad.mit.edu	37	chr1	111495394	111495395	+	Missense_Mutation	DNP	CC	TA	TA													ttgcagaagattttttccatCcgagccaatcgtctgaacta							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	111495395	TA	TA	111495394	3	4	190	1	0	0	0	0	1	0	0	0	1997	855	30	4	2209	4	C1orf103	1	111495394	Missense_Mutation	DNP	CC	TCGA-64-5779-01A-01D-1625-08	18393610	111495394	137755227	24	151642											
TBX15	6913	broad.mit.edu	37	chr1	119427386	119427386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacggacatctgggaggagGagcctggaactgccccatac	14	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119427386	T	T	119427386	3	4	190	1	0	0	0	0	1	0	0	0	15774	1174	41	3	34	3	TBX15	1	119427386	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7931992	119427386	129823235	25	151643											
PDE4DIP	9659	broad.mit.edu	37	chr1	144867764	144867764	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagaatgaagaaatgtacTtggaaaggattgagccctga	13	4	0	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144867764	A	A	144867764	1	1	190	0	1	0	0	0	0	0	0	0	11737	1624	56	5		5	PDE4DIP	1	144867764	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	25440378	144867764	104382857	26	151644											
NBPF10	100132406	broad.mit.edu	37	chr1	145330633	145330633	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatctaggtggggctgtgTggtttctgattccccctggc	14	9	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145330633	C	C	145330633	1	2	190	0	1	0	0	0	0	0	0	0	10287	1711	59	5		5	NBPF10	1	145330633	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	462869	145330633	103919988	27	151645											
NBPF10	100132406	broad.mit.edu	37	chr1	145567848	145567849	+	Intron	INS	-	T	T													aggagtttgggagaaagggcINSttgggaaaggtgtatggaat							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145567849	T	T	145567848	6	5	190	0	1	1	1	0	0	0	0	0	10287	812	28	0		0	NBPF10	1	145567848	Intron	INS	-	TCGA-64-5779-01A-01D-1625-08	237215	145567848	103682773	28	151646											
PRUNE	58497	broad.mit.edu	37	chr1	150980993	150980993	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgggttcgagtcccgcctcCtgactctggcctctagtccc	11	17	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150980993	G	G	150980993	1	3	190	0	1	0	0	0	0	0	0	0	12746	696	24	4		4	PRUNE	1	150980993	5'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	5413145	150980993	98269628	29	151647											
TCHH	7062	broad.mit.edu	37	chr1	152081990	152081990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaccttgttatcacgaaCtgcattttctttttctggtt	6	8	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152081990	A	A	152081990	3	1	190	1	0	0	0	0	1	0	0	0	15822	565	20	3	2132	3	TCHH	1	152081990	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1100997	152081990	97168631	30	151648											
FLG	2312	broad.mit.edu	37	chr1	152284709	152284709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttctggatcctgactgccCacgggaggcatcagaccttc	10	14	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152284709	A	A	152284709	3	1	190	1	0	0	0	0	1	0	0	0	5979	594	21	2	9536	2	FLG	1	152284709	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	202719	152284709	96965912	31	151649											
NPR1	4881	broad.mit.edu	37	chr1	153654151	153654151	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgcccttcatatgcccaCcccagccgacctctgtttgc	6	19	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153654151	A	A	153654151	1	1	190	0	1	0	0	0	0	0	0	0	10689	522	18	3		3	NPR1	1	153654151	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1369442	153654151	95596470	32	151650											
AQP10	89872	broad.mit.edu	37	chr1	154294481	154294481	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaacttcttcaccatgtttCtggctggctctctggccgtt	9	13	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154294481	A	A	154294481	3	1	190	1	0	0	0	0	1	0	0	0	824	912	32	3	184	3	AQP10	1	154294481	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	640330	154294481	94956140	33	151651											
KCNN3	3782	broad.mit.edu	37	chr1	154687513	154687513	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataaagtaggctgctatcaGgttcattttcttaggttcat	8	6	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154687513	C	C	154687513	1	2	190	0	1	0	0	0	0	0	0	0	8150	1015	35	4		4	KCNN3	1	154687513	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	393032	154687513	94563108	34	151652											
PEAR1	375033	broad.mit.edu	37	chr1	156880233	156880233	+	Intron	DEL	C	-	-													gggcagtgtagtgtcagctgCcagagcacccctccccccgc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156880233	-	-	156880233	6	5	190	0	1	1	0	1	0	0	0	0	11806	754	26	0		0	PEAR1	1	156880233	Intron	DEL	C	TCGA-64-5779-01A-01D-1625-08	2192720	156880233	92370388	35	151653											
ATP1A2	477	broad.mit.edu	37	chr1	160093111	160093111	+	Frame_Shift_Del	DEL	G	-	-													agttctgccgtcagcttttcGgggggttctccatcctgctg							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160093111	-	-	160093111	7	5	190	1	0	1	0	1	0	0	0	0	1133	1116	39	0	300	0	ATP1A2	1	160093111	Frame_Shift_Del	DEL	G	TCGA-64-5779-01A-01D-1625-08	3212878	160093111	89157510	36	151654											
ATP1A4	480	broad.mit.edu	37	chr1	160151424	160151424	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggaaagaagccttagggTgtacagaatccccttctgac	11	9	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160151424	G	G	160151424	1	3	190	0	1	0	0	0	0	0	0	0	1135	1711	59	5		5	ATP1A4	1	160151424	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	58313	160151424	89099197	37	151655											
LMX1A	4009	broad.mit.edu	37	chr1	165182758	165182758	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgagccgcctgtgcaggcTctgtctgaacagccttcctc	10	15	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165182758	A	A	165182758	1	1	190	0	1	0	0	0	0	0	0	0	8935	1566	54	5		5	LMX1A	1	165182758	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	5031334	165182758	84067863	38	151656											
MAEL	84944	broad.mit.edu	37	chr1	166974262	166974262	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagtcattcaaagtaggaGaagatacaagtagttttttt	9	3	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166974262	A	A	166974262	1	1	190	0	1	0	0	0	0	0	0	0	9242	957	33	4		4	MAEL	1	166974262	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1791504	166974262	82276359	39	151657											
SELP	6403	broad.mit.edu	37	chr1	169581705	169581705	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtccatcaccttggaagcCttcaaattctgcagcagtca	7	12	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169581705	T	T	169581705	1	4	190	0	1	0	0	0	0	0	0	0	14132	696	24	4		4	SELP	1	169581705	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2607443	169581705	79668916	40	151658											
SELL	6402	broad.mit.edu	37	chr1	169677729	169677729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagatttgttggttcccaCccacgtccatattcctccta	6	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169677729	A	A	169677729	3	1	190	1	0	0	0	0	1	0	0	0	14129	507	18	3	845	3	SELL	1	169677729	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	96024	169677729	79572892	41	151659											
RABGAP1L	9910	broad.mit.edu	37	chr1	174606543	174606543	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggagagtgttattactcgaGatattcatcgtacatttccc	8	8	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174606543	C	C	174606543	3	2	190	1	0	0	0	0	1	0	0	0	13073	942	33	4	1791	4	RABGAP1L	1	174606543	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	4928814	174606543	74644078	42	151660											
ASTN1	460	broad.mit.edu	37	chr1	177001922	177001922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcggcgtttgcaccagcGccggcgagtatacaggatca	14	13	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001922	T	T	177001922	3	4	190	1	0	0	0	0	1	0	0	0	1068	1087	38	3	3437	3	ASTN1	1	177001922	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2395379	177001922	72248699	43	151661											
RASAL2	9462	broad.mit.edu	37	chr1	178389559	178389559	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctggtctttattgtaaaAgtctaaataccttttgcaga	6	6	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178389559	T	T	178389559	1	4	190	0	1	0	0	0	0	0	0	0	13172	87	3	5		5	RASAL2	1	178389559	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1387637	178389559	70861062	44	151662											
QSOX1	5768	broad.mit.edu	37	chr1	180135707	180135707	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagagacttcaacatccCtggcttcccgactgtgaggg	11	13	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180135707	T	T	180135707	3	4	190	1	0	0	0	0	1	0	0	0	12991	681	24	4	353	4	QSOX1	1	180135707	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1746148	180135707	69114914	45	151663											
CACNA1E	777	broad.mit.edu	37	chr1	181754858	181754858	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttacccagaaaaatgccCccatgttccagcgcatggag	8	12	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181754858	T	T	181754858	3	4	190	1	0	0	0	0	1	0	0	0	2568	623	22	4	5859	4	CACNA1E	1	181754858	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1619151	181754858	67495763	46	151664											
SMG7	9887	broad.mit.edu	37	chr1	183503064	183503064	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaatacaacatttgaacAatagaatactgtattttctg	4	6	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183503064	T	T	183503064	1	4	190	0	1	0	0	0	0	0	0	0	14912	145	5	5		5	SMG7	1	183503064	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1748206	183503064	65747557	47	151665											
RGL1	23179	broad.mit.edu	37	chr1	183873865	183873865	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtatttcagaatcctcctaGatggttttcttcatctttta	5	8	4	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183873865	T	T	183873865	1	4	190	0	1	0	0	0	0	0	0	0	13384	957	33	3		3	RGL1	1	183873865	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	370801	183873865	65376756	48	151666											
FAM5C	339479	broad.mit.edu	37	chr1	190203559	190203559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagaactgacagaatctaGgttgtcatagttactgcagc	9	8	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190203559	T	T	190203559	3	4	190	1	0	0	0	0	1	0	0	0	5645	991	35	2	1649	2	FAM5C	1	190203559	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	6329694	190203559	59047062	49	151667											
RGS18	64407	broad.mit.edu	37	chr1	192150556	192150556	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaagcaaaagcaatatatGagaaatttatacagactgat	6	4	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192150556	T	T	192150556	4	4	190	1	0	0	0	0	0	1	0	0	13409	1291	45	3	432	3	RGS18	1	192150556	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1946997	192150556	57100065	50	151668											
F13B	2165	broad.mit.edu	37	chr1	197021812	197021812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctctgttgcactgcaCagataattcagacaatgggg	9	10	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197021812	A	A	197021812	3	1	190	1	0	0	0	0	1	0	0	0	5384	478	17	3	494	3	F13B	1	197021812	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4871256	197021812	52228809	51	151669											
KIF14	9928	broad.mit.edu	37	chr1	200562772	200562772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagtcgaacagtttcttaTattatagcacccatccactt	4	11	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200562772	C	C	200562772	1	2	190	0	1	0	0	0	0	0	0	0	8346	1421	49	5		5	KIF14	1	200562772	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	3540960	200562772	48687849	52	151670											
KIF21B	23046	broad.mit.edu	37	chr1	200977969	200977969	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcccggcgcttgcgctcGgcaatgcccccaaagaggtg	14	14	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200977969	T	T	200977969	2	4	190	1	0	0	0	0	0	0	0	1	8359	1103	39	1		1	KIF21B	1	200977969	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	415197	200977969	48272652	53	151671											
KDM5B	10765	broad.mit.edu	37	chr1	202722038	202722038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacccagaacatacaggcaCttcatgagtcatcagggtat	8	10	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202722038	A	A	202722038	3	1	190	1	0	0	0	0	1	0	0	0	8204	565	20	3	3002	3	KDM5B	1	202722038	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1744069	202722038	46528583	54	151672											
USH2A	7399	broad.mit.edu	37	chr1	215807654	215807654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgagaaagctgttctagGgttagcctctcttggtcccc	11	10	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215807654	T	T	215807654	1	4	190	0	1	0	0	0	0	0	0	0	17162	1247	43	2		2	USH2A	1	215807654	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	13085616	215807654	33442967	55	151673											
USH2A	7399	broad.mit.edu	37	chr1	215963748	215963748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggtgcaatacctaagGtagcatttccctaccaaggt	9	9	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215963748	T	T	215963748	1	4	190	0	1	0	0	0	0	0	0	0	17162	1276	44	3		3	USH2A	1	215963748	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	156094	215963748	33286873	56	151674											
USH2A	7399	broad.mit.edu	37	chr1	216074275	216074275	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacagatgaattagagCagagaaaactgtggagaaca	10	5	0	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216074275	G	G	216074275	1	3	190	0	1	0	0	0	0	0	0	0	17162	725	25	4		4	USH2A	1	216074275	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	110527	216074275	33176346	57	151675											
USH2A	7399	broad.mit.edu	37	chr1	216256730	216256730	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aattaagtgtaatgccaacaCatggtttatttattttaaag	6	4	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216256730	G	G	216256730	1	3	190	0	1	0	0	0	0	0	0	0	17162	493	17	4		4	USH2A	1	216256730	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	182455	216256730	32993891	58	151676											
USH2A	7399	broad.mit.edu	37	chr1	216424528	216424528	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaagacagggagggagggaGaagaaaactaaatgttcaac	13	5	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216424528	A	A	216424528	1	1	190	0	1	0	0	0	0	0	0	0	17162	957	33	4		4	USH2A	1	216424528	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	167798	216424528	32826093	59	151677											
EPRS	2058	broad.mit.edu	37	chr1	220160406	220160406	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgtgatggttaaaccagtCaaaatttgttttaaaaacta	6	4	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220160406	A	A	220160406	1	1	190	0	1	0	0	0	0	0	0	0	5233	841	29	3		3	EPRS	1	220160406	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3735878	220160406	29090215	60	151678											
MIA3	375056	broad.mit.edu	37	chr1	222798126	222798126	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaggttggacgcacttttgGatattttccaaaagatttaa	9	5	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222798126	A	A	222798126	3	1	190	1	0	0	0	0	1	0	0	0	9658	1174	41	4	294	4	MIA3	1	222798126	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2637720	222798126	26452495	61	151679											
OBSCN	84033	broad.mit.edu	37	chr1	228495021	228495021	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggagacaggtgacatagcCcggctgtgctgtcagctgag	15	10	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228495021	G	G	228495021	2	3	190	1	0	0	0	0	0	0	0	1	10907	610	22	4		4	OBSCN	1	228495021	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	5696895	228495021	20755600	62	151680											
SIPA1L2	57568	broad.mit.edu	37	chr1	232581228	232581228	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatgtcaagttctcaccCcagtgatttacaagggcccc	7	13	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232581228	A	A	232581228	1	1	190	0	1	0	0	0	0	0	0	0	14443	638	22	2		2	SIPA1L2	1	232581228	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4086207	232581228	16669393	63	151681											
SIPA1L2	57568	broad.mit.edu	37	chr1	232600634	232600634	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagcacagttgtctacCgaggacaggaggacacattc	10	11	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232600634	A	A	232600634	2	1	190	1	0	0	0	0	0	0	0	1	14443	639	23	1		1	SIPA1L2	1	232600634	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	19406	232600634	16649987	64	151682											
KIAA1804	84451	broad.mit.edu	37	chr1	233489467	233489467	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctattaggaatggatgaaGgtactgaagggtttatctca	11	5	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	233489467	C	C	233489467	1	2	190	0	1	0	0	0	0	0	0	0	8329	1015	35	4		4	KIAA1804	1	233489467	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	888833	233489467	15761154	65	151683											
HEATR1	55127	broad.mit.edu	37	chr1	236721500	236721500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttcaatgtgtgccaggCggtaacagctcctgttccaa	9	10	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236721500	A	A	236721500	1	1	190	0	1	0	0	0	0	0	0	0	7094	783	27	3		3	HEATR1	1	236721500	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3232033	236721500	12529121	66	151684											
ACTN2	88	broad.mit.edu	37	chr1	236917490	236917490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagccacccactcagtcaGgtgggagcaccgttctgtta	10	14	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236917490	T	T	236917490	1	4	190	0	1	0	0	0	0	0	0	0	205	1015	35	2		2	ACTN2	1	236917490	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	195990	236917490	12333131	67	151685											
RGS7	6000	broad.mit.edu	37	chr1	241518927	241518927	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaaagttgatacatactcTgatctagagggggaaaaaaa	9	6	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241518927	G	G	241518927	1	3	190	0	1	0	0	0	0	0	0	0	13419	1595	55	5		5	RGS7	1	241518927	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	4601437	241518927	7731694	68	151686											
WDR64	128025	broad.mit.edu	37	chr1	241904910	241904910	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgagaaatcaatgtcatgCtttacaacaaatattttcat	4	7	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241904910	G	G	241904910	3	3	190	1	0	0	0	0	1	0	0	0	17442	797	28	4	1426	4	WDR64	1	241904910	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	385983	241904910	7345711	69	151687											
CEP170	9859	broad.mit.edu	37	chr1	243328308	243328308	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttttccattttttccCtagcacctgaagatgatgat	5	9	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243328308	T	T	243328308	3	4	190	1	0	0	0	0	1	0	0	0	3280	681	24	4	1862	4	CEP170	1	243328308	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1423398	243328308	5922313	70	151688											
OR2L13	284521	broad.mit.edu	37	chr1	248138773	248138773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgtagtaattttctaCtatgcaatgtttgcttatac	5	8	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248138773	A	A	248138773	1	1	190	0	1	0	0	0	0	0	0	0	11100	580	20	3		3	OR2L13	1	248138773	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4810465	248138773	1111848	71	151689											
OR2M2	391194	broad.mit.edu	37	chr1	248344044	248344045	+	Missense_Mutation	DNP	GG	TT	TT													tggtggtgggaatgtactatGgagcagctttgttcatgtac							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	248344045	TT	TT	248344044	3	4	190	1	0	0	0	0	1	0	0	0	11104	1349	47	2	759	2	OR2M2	1	248344044	Missense_Mutation	DNP	GG	TCGA-64-5779-01A-01D-1625-08	205271	248344044	906577	72	151690											
OR2T6	254879	broad.mit.edu	37	chr1	248550933	248550933	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgaaaacaatgaaaccttGaccagaggctttaccctcat	6	10	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248550933	T	T	248550933	3	4	190	1	0	0	0	0	1	0	0	0	11123	1281	45	3	26	3	OR2T6	1	248550933	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	206889	248550933	699688	73	151691											
OR2T6	254879	broad.mit.edu	37	chr1	248551538	248551538	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgcaatgctgctgatccCcttctcggtggtgactgcat	11	12	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248551538	A	A	248551538	3	1	190	1	0	0	0	0	1	0	0	0	11123	623	22	2	631	2	OR2T6	1	248551538	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	605	248551538	699083	74	151692											
CMPK2	129607	broad.mit.edu	37	chr2	6991603	6991603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacgaaacacactgttggCctcaagttctgcttcttccc	7	13	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6991603	A	A	6991603	3	1	190	1	0	0	0	0	1	0	0	0	3613	739	26	3	153	3	CMPK2	2	6991603	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08		6991603	236207770	75	151693											
KCNF1	3754	broad.mit.edu	37	chr2	11054013	11054013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accgaggagaagcaccacagGacccggctccagagttgcaa	12	13	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11054013	T	T	11054013	3	4	190	1	0	0	0	0	1	0	0	0	8096	1165	41	3	1463	3	KCNF1	2	11054013	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	4062410	11054013	232145360	76	151694											
ITSN2	50618	broad.mit.edu	37	chr2	24524164	24524164	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctggacattttcagactaGattacacagactaccagtga	8	9	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24524164	A	A	24524164	1	1	190	0	1	0	0	0	0	0	0	0	7997	957	33	4		4	ITSN2	2	24524164	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	13470151	24524164	218675209	77	151695											
C2orf53	339779	broad.mit.edu	37	chr2	27360443	27360443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccggaggcacaccaggCatataggatactccacgact	13	12	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27360443	A	A	27360443	3	1	190	1	0	0	0	0	1	0	0	0	2196	710	25	3	487	3	C2orf53	2	27360443	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2836279	27360443	215838930	78	151696											
SRD5A2	6716	broad.mit.edu	37	chr2	31751320	31751320	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggggtagtcctcaaacatCttgaggtagaacctaaaaga	10	7	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31751320	G	G	31751320	3	3	190	1	0	0	0	0	1	0	0	0	15257	912	32	4	57	4	SRD5A2	2	31751320	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4390877	31751320	211448053	79	151697											
SLC8A1	6546	broad.mit.edu	37	chr2	40657160	40657160	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagagactccaagaaacatGtagaccatggccacaaaata	7	9	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40657160	T	T	40657160	4	4	190	1	0	0	0	0	0	1	0	0	14820	1372	48	3	2808	3	SLC8A1	2	40657160	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	8905840	40657160	202542213	80	151698											
SIX2	10736	broad.mit.edu	37	chr2	45235686	45235686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagaaggtctacttactcGtacctttccttggcctcggc	9	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45235686	T	T	45235686	1	4	190	0	1	0	0	0	0	0	0	0	14460	1160	40	3		3	SIX2	2	45235686	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	4578526	45235686	197963687	81	151699											
FSHR	2492	broad.mit.edu	37	chr2	49189813	49189813	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagctctttgtgacataCccttcaaaggcaagactgaa	8	10	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49189813	A	A	49189813	1	1	190	0	1	0	0	0	0	0	0	0	6133	522	18	3		3	FSHR	2	49189813	3'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	3954127	49189813	194009560	82	151700											
NRXN1	9378	broad.mit.edu	37	chr2	51254604	51254604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccccgagccccgcccaGgccccggcccccgtgggtcg	12	23	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51254604	T	T	51254604	1	4	190	0	1	0	0	0	0	0	0	0	10760	1015	35	2		2	NRXN1	2	51254604	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2064791	51254604	191944769	83	151701											
CCDC88A	55704	broad.mit.edu	37	chr2	55582735	55582735	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcctgcctaagccttctTatcttggctttagcatctgc	6	12	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55582735	A	A	55582735	2	1	190	1	0	0	0	0	0	0	0	1	2891	1744	61	5		5	CCDC88A	2	55582735	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	4328131	55582735	187616638	84	151702											
VPS54	51542	broad.mit.edu	37	chr2	64211150	64211150	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattgcataaaatcaccacTcaactgaaaatgagtaagaa	5	9	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64211150	A	A	64211150	1	1	190	0	1	0	0	0	0	0	0	0	17343	1566	54	5		5	VPS54	2	64211150	5'UTR	SNP	T	TCGA-64-5779-01A-01D-1625-08	8628415	64211150	178988223	85	151703											
ANTXR1	84168	broad.mit.edu	37	chr2	69409624	69409624	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtattttgtttattttaGgttcgttggggagaaaaggg	13	1	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69409624	T	T	69409624	5	4	190	1	0	0	0	0	0	0	1	0	711	1014	35	2	1324	2	ANTXR1	2	69409624	Splice_Site	SNP	G	TCGA-64-5779-01A-01D-1625-08	5198474	69409624	173789749	86	151704											
ASPRV1	151516	broad.mit.edu	37	chr2	70188744	70188744	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcggctggctgactgctgggGcagaggcaggcagtgctgtg	19	9	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70188744	C	C	70188744	3	2	190	1	0	0	0	0	1	0	0	0	1062	1203	42	4	958	4	ASPRV1	2	70188744	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	779120	70188744	173010629	87	151705											
ADD2	119	broad.mit.edu	37	chr2	70903946	70903946	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgggcttcggctcttctcGgcaatgacgctcgccaggag	13	14	2	1	rs150530252	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70903946	A	A	70903946	2	1	190	1	0	0	0	0	0	0	0	1	305	1103	39	4		4	ADD2	2	70903946	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	715202	70903946	172295427	88	151706											
SLC4A5	57835	broad.mit.edu	37	chr2	74479366	74479366	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcatctctccatcatccCcgctgcttgttccgccggcc	8	19	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74479366	A	A	74479366	3	1	190	1	0	0	0	0	1	0	0	0	14771	623	22	2	2059	2	SLC4A5	2	74479366	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3575420	74479366	168720007	89	151707											
LRRTM4	80059	broad.mit.edu	37	chr2	77745984	77745984	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttaggtcccgcacatatCatggtgctttccttatttcc	7	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77745984	T	T	77745984	3	4	190	1	0	0	0	0	1	0	0	0	9129	826	29	4	775	4	LRRTM4	2	77745984	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3266618	77745984	165453389	90	151708											
REG3A	5068	broad.mit.edu	37	chr2	79386527	79386527	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggcagggccatgggaggcAgcatagtgtctgcgacttga	17	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79386527	G	G	79386527	3	3	190	1	0	0	0	0	1	0	0	0	13320	188	7	5	542	5	REG3A	2	79386527	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	1640543	79386527	163812846	91	151709											
PROM2	150696	broad.mit.edu	37	chr2	95952241	95952241	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggacaattctgtgctGgggcagcggctgcaggagga	16	8	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95952241	T	T	95952241	2	4	190	1	0	0	0	0	0	0	0	1	12662	1335	47	2		2	PROM2	2	95952241	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	16565714	95952241	147247132	92	151710											
SNRNP200	23020	broad.mit.edu	37	chr2	96971126	96971126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccttccccaagaccaaaCgcaccgccttgtactcgtat	5	16	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96971126	A	A	96971126	1	1	190	0	1	0	0	0	0	0	0	0	14966	551	19	3		3	SNRNP200	2	96971126	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1018885	96971126	146228247	93	151711											
NCAPH	23397	broad.mit.edu	37	chr2	97025861	97025861	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaagtgaagtgctgaCgtctgtgttcactctgcaga	11	10	3	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97025861	T	T	97025861	1	4	190	0	1	0	0	0	0	0	0	0	10304	551	19	4		4	NCAPH	2	97025861	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	54735	97025861	146173512	94	151712											
NPAS2	4862	broad.mit.edu	37	chr2	101581279	101581279	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaaacctagggtgagcatCtggcacccaagcaacttttt	8	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101581279	T	T	101581279	1	4	190	0	1	0	0	0	0	0	0	0	10658	928	32	4		4	NPAS2	2	101581279	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4555418	101581279	141618094	95	151713											
EDAR	10913	broad.mit.edu	37	chr2	109513673	109513673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatcaaatggcagctccGtggggctaagacctacagac	12	11	1	2	rs150887314	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109513673	T	T	109513673	3	4	190	1	0	0	0	0	1	0	0	0	4945	1145	40	3	313	3	EDAR	2	109513673	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7932394	109513673	133685700	96	151714											
MALL	7851	broad.mit.edu	37	chr2	110849133	110849133	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggccaattgtcctcacCcaacccagaacgtccaccca	6	17	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110849133	A	A	110849133	1	1	190	0	1	0	0	0	0	0	0	0	9293	638	22	2		2	MALL	2	110849133	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1335460	110849133	132350240	97	151715											
DPP10	57628	broad.mit.edu	37	chr2	116525980	116525980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagctatgttcctcatccaGgtaagtgctggcttttttcc	9	10	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116525980	T	T	116525980	3	4	190	1	0	0	0	0	1	0	0	0	4767	1014	35	2	1442	2	DPP10	2	116525980	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	5676847	116525980	126673393	98	151716											
CNTNAP5	129684	broad.mit.edu	37	chr2	125547524	125547524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcctaggatgcattcgctCcttacacttgaatggacaga	8	11	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125547524	A	A	125547524	3	1	190	1	0	0	0	0	1	0	0	0	3682	855	30	3	2865	3	CNTNAP5	2	125547524	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	9021544	125547524	117651849	99	151717											
MAP3K2	10746	broad.mit.edu	37	chr2	128083202	128083202	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagccaaggaggtcaaggcTgcagtaagccgcattcacgc	14	11	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128083202	A	A	128083202	1	1	190	0	1	0	0	0	0	0	0	0	9342	1595	55	5		5	MAP3K2	2	128083202	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	2535678	128083202	115116171	100	151718											
SAP130	79595	broad.mit.edu	37	chr2	128775259	128775259	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccctctccattaccttcaTaagtccctccgaaaatgaaa	3	14	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128775259	G	G	128775259	3	3	190	1	0	0	0	0	1	0	0	0	13942	1406	49	5	2906	5	SAP130	2	128775259	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	692057	128775259	114424114	101	151719											
POTEF	728378	broad.mit.edu	37	chr2	130867958	130867958	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctaacttgtcttgcttttTgtctgatttctggctgatgc	8	8	4	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130867958	G	G	130867958	1	3	190	0	1	0	0	0	0	0	0	0	12361	1827	63	5		5	POTEF	2	130867958	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	2092699	130867958	112331415	102	151720											
POTEE	445582	broad.mit.edu	37	chr2	132021677	132021678	+	Nonsense_Mutation	DNP	GG	TT	TT													cgcctagacctggctgggcgGgaactgcctgactacctcat							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	132021678	TT	TT	132021677	4	4	190	1	0	0	0	0	0	1	0	0	12360	1219	43	2	2707	2	POTEE	2	132021677	Nonsense_Mutation	DNP	GG	TCGA-64-5779-01A-01D-1625-08	1153719	132021677	111177696	103	151721											
LCT	3938	broad.mit.edu	37	chr2	136587266	136587266	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgaaaatagtagttaaatAgggtcattagaacctaagca	8	6	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136587266	G	G	136587266	1	3	190	0	1	0	0	0	0	0	0	0	8765	435	15	5		5	LCT	2	136587266	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	4565589	136587266	106612107	104	151722											
LRP1B	53353	broad.mit.edu	37	chr2	141215321	141215321	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atacaactgctacataacttCgtgtgaataattgctgtgac	7	8	0	2	rs75309911	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141215321	A	A	141215321	1	1	190	0	1	0	0	0	0	0	0	0	9042	899	31	3		3	LRP1B	2	141215321	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4628055	141215321	101984052	105	151723											
ZEB2	9839	broad.mit.edu	37	chr2	145158893	145158893	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctataaaaggagaaagacTgacatcagttttgtgcagga	11	5	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145158893	A	A	145158893	1	1	190	0	1	0	0	0	0	0	0	0	17750	1595	55	5		5	ZEB2	2	145158893	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	3943572	145158893	98040480	106	151724											
GALNT13	114805	broad.mit.edu	37	chr2	155157908	155157908	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcattatttacaatgattGttccttttcccagatttggc	6	8	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155157908	T	T	155157908	1	4	190	0	1	0	0	0	0	0	0	0	6273	1392	48	3		3	GALNT13	2	155157908	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	9999015	155157908	88041465	107	151725											
UPP2	151531	broad.mit.edu	37	chr2	158980300	158980300	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcactgtgctccttttccaGagaaaaaaagttagactact	7	9	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158980300	T	T	158980300	3	4	190	1	0	0	0	0	1	0	0	0	17139	942	33	3	905	3	UPP2	2	158980300	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3822392	158980300	84219073	108	151726											
GCA	25801	broad.mit.edu	37	chr2	163208789	163208789	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctagaacagtcaattgacAttttaatatgcttttataca	5	7	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163208789	G	G	163208789	1	3	190	0	1	0	0	0	0	0	0	0	6345	232	8	5		5	GCA	2	163208789	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	4228489	163208789	79990584	109	151727											
SLC38A11	151258	broad.mit.edu	37	chr2	165765142	165765142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggtaaatctttgcacGtactcacattgagttctaga	10	7	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165765142	T	T	165765142	1	4	190	0	1	0	0	0	0	0	0	0	14717	1160	40	3		3	SLC38A11	2	165765142	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2556353	165765142	77434231	110	151728											
XIRP2	129446	broad.mit.edu	37	chr2	168098538	168098538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaaaaattctgaactgGcatttattcagttctgtaag	6	6	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168098538	T	T	168098538	1	4	190	0	1	0	0	0	0	0	0	0	17557	1218	42	3		3	XIRP2	2	168098538	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2333396	168098538	75100835	111	151729											
XIRP2	129446	broad.mit.edu	37	chr2	168099625	168099625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattctgaagggagaggtgCagtccattagatggatcttt	12	5	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168099625	A	A	168099625	3	1	190	1	0	0	0	0	1	0	0	0	17557	711	25	3	1753	3	XIRP2	2	168099625	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1087	168099625	75099748	112	151730											
ABCB11	8647	broad.mit.edu	37	chr2	169792773	169792773	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagggcctgcttatctcgAgaggcaaatcctgtcaacat	9	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169792773	T	T	169792773	2	4	190	1	0	0	0	0	0	0	0	1	42	291	11	5		5	ABCB11	2	169792773	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	1693148	169792773	73406600	113	151731											
LRP2	4036	broad.mit.edu	37	chr2	170070315	170070315	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcatggactgcaattccCcaggggtgggaaagctggtg	15	8	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170070315	A	A	170070315	3	1	190	1	0	0	0	0	1	0	0	0	9043	624	22	2	8251	2	LRP2	2	170070315	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	277542	170070315	73129058	114	151732											
FASTKD1	79675	broad.mit.edu	37	chr2	170428301	170428301	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaacaggctggtcttctgcTtttgaagcttccaaagcata	8	9	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170428301	A	A	170428301	3	1	190	1	0	0	0	0	1	0	0	0	5742	1609	56	5	2360	5	FASTKD1	2	170428301	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	357986	170428301	72771072	115	151733											
ITGA6	3655	broad.mit.edu	37	chr2	173355838	173355838	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttatttgctgaaagaaaAtaccagactcttgtaagtat	6	6	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173355838	G	G	173355838	2	3	190	1	0	0	0	0	0	0	0	1	7950	98	4	5		5	ITGA6	2	173355838	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	2927537	173355838	69843535	116	151734											
OSBPL6	114880	broad.mit.edu	37	chr2	179192944	179192944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaagtgtgtcatcaggcaCtgagtaacatgtgatttgtt	10	5	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179192944	T	T	179192944	1	4	190	0	1	0	0	0	0	0	0	0	11375	580	20	4		4	OSBPL6	2	179192944	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5837106	179192944	64006429	117	151735											
TTN	7273	broad.mit.edu	37	chr2	179433898	179433898	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaagaattcttatggcagTtagttacaacagcagcatat	7	8	1	1	rs75544937		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179433898	C	C	179433898	3	2	190	1	0	0	0	0	1	0	0	0	16861	1725	60	5	31166	5	TTN	2	179433898	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	240954	179433898	63765475	118	151736											
CCDC141	285025	broad.mit.edu	37	chr2	179737078	179737078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataatagcttttctttccCaagagatacagctttttgtt	5	7	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179737078	A	A	179737078	1	1	190	0	1	0	0	0	0	0	0	0	2801	609	21	2		2	CCDC141	2	179737078	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	303180	179737078	63462295	119	151737											
ZNF385B	151126	broad.mit.edu	37	chr2	180634429	180634429	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcaactggtcctcaggcctGtcgttctttatccccttttc	6	15	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180634429	C	C	180634429	3	2	190	1	0	0	0	0	1	0	0	0	18003	1368	48	4	1422	4	ZNF385B	2	180634429	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	897351	180634429	62564944	120	151738											
ITGA4	3676	broad.mit.edu	37	chr2	182360546	182360546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgttgacgcttctttaagCcaccctgagtcagtaaatag	8	9	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182360546	A	A	182360546	3	1	190	1	0	0	0	0	1	0	0	0	7948	738	26	3	1476	3	ITGA4	2	182360546	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1726117	182360546	60838827	121	151739											
COL5A2	1290	broad.mit.edu	37	chr2	189922092	189922092	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaattcctctttctcccGgcataccttgaagacctggt	7	14	2	2	rs150260969	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189922092	C	C	189922092	3	2	190	1	0	0	0	0	1	0	0	0	3729	1116	39	4	2292	4	COL5A2	2	189922092	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7561546	189922092	53277281	122	151740											
STAT1	6772	broad.mit.edu	37	chr2	191856010	191856010	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagcggcctctgagggtgCgttggcatgcagggctgtct	16	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191856010	A	A	191856010	2	1	190	1	0	0	0	0	0	0	0	1	15382	755	27	3		3	STAT1	2	191856010	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	1933918	191856010	51343363	123	151741											
SATB2	23314	broad.mit.edu	37	chr2	200173430	200173430	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggaccctcagcagctacTgctggcacacagagccctga	10	15	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200173430	A	A	200173430	1	1	190	0	1	0	0	0	0	0	0	0	13966	1595	55	5		5	SATB2	2	200173430	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	8317420	200173430	43025943	124	151742											
ALS2CR12	130540	broad.mit.edu	37	chr2	202207028	202207028	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagtcccagtgaactaaaatCctgcaaaggatgcgggaccc	10	11	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202207028	A	A	202207028	1	1	190	0	1	0	0	0	0	0	0	0	553	870	30	3		3	ALS2CR12	2	202207028	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2033598	202207028	40992345	125	151743											
CDK15	65061	broad.mit.edu	37	chr2	202671450	202671450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgctaccattgttcagaGggaggcgaggcacacagctg	14	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202671450	T	T	202671450	3	4	190	1	0	0	0	0	1	0	0	0	3161	1015	35	2		2	CDK15	2	202671450	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	464422	202671450	40527923	126	151744											
ZDBF2	57683	broad.mit.edu	37	chr2	207174292	207174292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgaacgactcaccgactGcagaaagctcacaaagaagc	8	13	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207174292	T	T	207174292	2	4	190	1	0	0	0	0	0	0	0	1	17725	1306	46	3		3	ZDBF2	2	207174292	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	4502842	207174292	36025081	127	151745											
MAP2	4133	broad.mit.edu	37	chr2	210560646	210560646	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatgataaactgctcttccGctcagacacccttcagataa	5	12	3	3	rs142649637	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210560646	A	A	210560646	3	1	190	1	0	0	0	0	1	0	0	0	9327	1087	38	4	3766	4	MAP2	2	210560646	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3386354	210560646	32638727	128	151746											
MYL1	4632	broad.mit.edu	37	chr2	211167110	211167110	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaatggcaacaccagtGgggataattaggaagagcta	12	6	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211167110	T	T	211167110	1	4	190	0	1	0	0	0	0	0	0	0	10137	1363	47	2		2	MYL1	2	211167110	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	606464	211167110	32032263	129	151747											
PTPRN	5798	broad.mit.edu	37	chr2	220161165	220161165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttaagagcccacctgcCagaagtctgcgatggtatgg	11	12	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220161165	A	A	220161165	3	1	190	1	0	0	0	0	1	0	0	0	12915	595	21	2	583	2	PTPRN	2	220161165	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	8994055	220161165	23038208	130	151748											
CHPF	79586	broad.mit.edu	37	chr2	220404538	220404538	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcctgccagccggagatgGcatgcatgcggcagcggttc	16	12	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220404538	C	C	220404538	3	2	190	1	0	0	0	0	1	0	0	0	3399	1203	42	4	436	4	CHPF	2	220404538	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	243373	220404538	22794835	131	151749											
SCG2	7857	broad.mit.edu	37	chr2	224462250	224462250	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacagatcttcatcccagTactgcctatttggggtatca	7	10	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	224462250	C	C	224462250	3	2	190	1	0	0	0	0	1	0	0	0	14003	1638	57	5	106	5	SCG2	2	224462250	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	4057712	224462250	18737123	132	151750											
DOCK10	55619	broad.mit.edu	37	chr2	225702469	225702469	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgagcaatttccaagaggCatttcataccttaatatatg	6	7	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225702469	T	T	225702469	1	4	190	0	1	0	0	0	0	0	0	0	4725	725	25	4		4	DOCK10	2	225702469	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1240219	225702469	17496904	133	151751											
SPHKAP	80309	broad.mit.edu	37	chr2	228884871	228884871	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagacatttatattttcataAtctagtgaggagaaaatgag	9	3	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228884871	G	G	228884871	2	3	190	1	0	0	0	0	0	0	0	1	15166	115	4	5		5	SPHKAP	2	228884871	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	3182402	228884871	14314502	134	151752											
ECEL1	9427	broad.mit.edu	37	chr2	233349015	233349015	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccctacctgtgcccgcCaacctgtggctggacccagg	10	19	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233349015	A	A	233349015	1	1	190	0	1	0	0	0	0	0	0	0	4931	609	21	2		2	ECEL1	2	233349015	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4464144	233349015	9850358	135	151753											
ECEL1	9427	broad.mit.edu	37	chr2	233349417	233349417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtccatggccaaggaaCggtttgcccatctctgggga	14	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233349417	A	A	233349417	1	1	190	0	1	0	0	0	0	0	0	0	4931	551	19	3		3	ECEL1	2	233349417	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	402	233349417	9849956	136	151754											
TRPM8	79054	broad.mit.edu	37	chr2	234872049	234872049	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagcccacatcagatttAcaccaaatatatgctttgtt	4	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234872049	T	T	234872049	1	4	190	0	1	0	0	0	0	0	0	0	16717	406	14	5		5	TRPM8	2	234872049	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1522632	234872049	8327324	137	151755											
TRPM8	79054	broad.mit.edu	37	chr2	234894523	234894523	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtttgggtatgtgttcagtCacatgttcactgatgtccac	10	8	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234894523	A	A	234894523	1	1	190	0	1	0	0	0	0	0	0	0	16717	841	29	3		3	TRPM8	2	234894523	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	22474	234894523	8304850	138	151756											
CHL1	10752	broad.mit.edu	37	chr3	447274	447274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttagtcgaatacggagaGggagaccatggtctcttcag	13	8	2	2	rs77982207	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	447274	T	T	447274	3	4	190	1	0	0	0	0	1	0	0	0	3380	991	35	2	3657	2	CHL1	3	447274	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08		447274	197575156	139	151757											
CNTN6	27255	broad.mit.edu	37	chr3	1427494	1427494	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtctcgtaagtatgcatAcactccaggaaacaagattc	7	9	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1427494	G	G	1427494	1	3	190	0	1	0	0	0	0	0	0	0	3677	406	14	5		5	CNTN6	3	1427494	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	980220	1427494	196594936	140	151758											
SRGAP3	9901	broad.mit.edu	37	chr3	9106117	9106117	+	Frame_Shift_Del	DEL	C	-	-													caatcttcttcacagagctgCggcgctggggccggtcctcg							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9106117	-	-	9106117	7	5	190	1	0	1	0	1	0	0	0	0	15265	768	27	0	2771	0	SRGAP3	3	9106117	Frame_Shift_Del	DEL	C	TCGA-64-5779-01A-01D-1625-08	7678623	9106117	188916313	141	151759											
TTLL3	26140	broad.mit.edu	37	chr3	9877020	9877020	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatatgaagctagggaaGcccctgcttcgattccccac	12	12	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9877020	T	T	9877020	3	4	190	1	0	0	0	0	1	0	0	0	16854	962	34	3	2212	3	TTLL3	3	9877020	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	770903	9877020	188145410	142	151760											
HRH1	3269	broad.mit.edu	37	chr3	11301960	11301960	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgaaccgcgaaaggaagGccgccaaacagttgggtttt	12	9	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11301960	T	T	11301960	3	4	190	1	0	0	0	0	1	0	0	0	7422	1203	42	3	1239	3	HRH1	3	11301960	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1424940	11301960	186720470	143	151761											
LRRC3B	116135	broad.mit.edu	37	chr3	26751037	26751037	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaataatgaagagacAcatgtgttagctgcagcctt	10	6	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26751037	T	T	26751037	1	4	190	0	1	0	0	0	0	0	0	0	9083	174	6	5		5	LRRC3B	3	26751037	5'UTR	SNP	A	TCGA-64-5779-01A-01D-1625-08	15449077	26751037	171271393	144	151762											
CRTAP	10491	broad.mit.edu	37	chr3	33155722	33155722	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtcggcctaccggcacgcGctggacaagtacagcggcga	15	13	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33155722	C	C	33155722	2	2	190	1	0	0	0	0	0	0	0	1	3930	1074	38	4		4	CRTAP	3	33155722	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	6404685	33155722	164866708	145	151763											
DLEC1	9940	broad.mit.edu	37	chr3	38136527	38136527	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggttctaagcccccacacaGaccacgagttcatcctgagc	9	15	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38136527	T	T	38136527	3	4	190	1	0	0	0	0	1	0	0	0	4592	942	33	3	2127	3	DLEC1	3	38136527	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	4980805	38136527	159885903	146	151764											
SCN5A	6331	broad.mit.edu	37	chr3	38651479	38651479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggcaagaacaagcacGgggtcacccaggggcaccga	16	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38651479	T	T	38651479	1	4	190	0	1	0	0	0	0	0	0	0	14035	1131	39	1		1	SCN5A	3	38651479	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	514952	38651479	159370951	147	151765											
SCN10A	6336	broad.mit.edu	37	chr3	38784124	38784124	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttaataataagtaccacctCcaacattttgacttcagccc	4	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38784124	A	A	38784124	1	1	190	0	1	0	0	0	0	0	0	0	14025	870	30	3		3	SCN10A	3	38784124	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	132645	38784124	159238306	148	151766											
XIRP1	165904	broad.mit.edu	37	chr3	39226990	39226990	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctttgggggcatggtgGggtccagttttggggtcttt	16	6	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39226990	A	A	39226990	3	1	190	1	0	0	0	0	1	0	0	0	17556	1232	43	4	1588	4	XIRP1	3	39226990	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	442866	39226990	158795440	149	151767											
TRAK1	22906	broad.mit.edu	37	chr3	42226305	42226305	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggaggaggtaagacattgGaggccgaggcttccagaggg	19	6	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42226305	T	T	42226305	1	4	190	0	1	0	0	0	0	0	0	0	16573	1189	41	3		3	TRAK1	3	42226305	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2999315	42226305	155796125	150	151768											
RTP3	83597	broad.mit.edu	37	chr3	46539429	46539429	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggttcatgggcccaatcCaggtcctcaaagggagggca	13	11	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46539429	A	A	46539429	1	1	190	0	1	0	0	0	0	0	0	0	13846	609	21	2		2	RTP3	3	46539429	5'Flank	SNP	C	TCGA-64-5779-01A-01D-1625-08	4313124	46539429	151483001	151	151769											
ZMYND10	51364	broad.mit.edu	37	chr3	50379321	50379321	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaattgcctgccacttGcctctgttttctcgctccag	8	14	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50379321	T	T	50379321	2	4	190	1	0	0	0	0	0	0	0	1	17831	1306	46	3		3	ZMYND10	3	50379321	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	3839892	50379321	147643109	152	151770											
RRP9	9136	broad.mit.edu	37	chr3	51968607	51968607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaacccctgcaccggccCacccggcgacccctcctccc	8	24	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51968607	A	A	51968607	1	1	190	0	1	0	0	0	0	0	0	0	13802	609	21	2		2	RRP9	3	51968607	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1589286	51968607	146053823	153	151771											
ARHGEF3	50650	broad.mit.edu	37	chr3	56763635	56763635	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccatttttgaaactgactCtgaagaagtttttaactaga	6	6	1	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56763635	A	A	56763635	3	1	190	1	0	0	0	0	1	0	0	0	906	913	32	3	340	3	ARHGEF3	3	56763635	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4795028	56763635	141258795	154	151772											
ASB14	142686	broad.mit.edu	37	chr3	57302535	57302536	+	3'UTR	DNP	GG	TT	TT													ggtatacagtcctaatgtctGgatctttatgtgttgtttgt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	57302536	TT	TT	57302535	1	4	190	0	1	0	0	0	0	0	0	0	1022	1363	47	2		2	ASB14	3	57302535	3'UTR	DNP	GG	TCGA-64-5779-01A-01D-1625-08	538900	57302535	140719895	155	151773											
FLNB	2317	broad.mit.edu	37	chr3	58128605	58128605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagggtcacgagttcttGgtctccggtgttgggccgtg	15	11	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58128605	T	T	58128605	1	4	190	0	1	0	0	0	0	0	0	0	5992	1363	47	2		2	FLNB	3	58128605	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	826070	58128605	139893825	156	151774											
ABHD6	57406	broad.mit.edu	37	chr3	58253072	58253072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggctcagtgtggtcaaGgtgcaattctcgattcttct	11	8	5	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58253072	T	T	58253072	3	4	190	1	0	0	0	0	1	0	0	0	86	1014	35	2	282	2	ABHD6	3	58253072	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	124467	58253072	139769358	157	151775											
FOXP1	27086	broad.mit.edu	37	chr3	71050259	71050259	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaaatggagaaacaaaaagGaaaatataagttaccaggat	9	3	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71050259	C	C	71050259	1	2	190	0	1	0	0	0	0	0	0	0	6086	1189	41	4		4	FOXP1	3	71050259	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	12797187	71050259	126972171	158	151776											
ROBO2	6092	broad.mit.edu	37	chr3	77651358	77651358	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatttccctatgttcaccaCagatgtgctgccaccagttc	6	14	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77651358	G	G	77651358	1	3	190	0	1	0	0	0	0	0	0	0	13625	493	17	4		4	ROBO2	3	77651358	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	6601099	77651358	120371072	159	151777											
EPHA6	285220	broad.mit.edu	37	chr3	97356925	97356925	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaagctgcttatacaacaaCtgtaagtttatatgcccttt	6	8	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97356925	G	G	97356925	3	3	190	1	0	0	0	0	1	0	0	0	5213	579	20	4	2905	4	EPHA6	3	97356925	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	19705567	97356925	100665505	160	151778											
DCBLD2	131566	broad.mit.edu	37	chr3	98530098	98530098	+	Frame_Shift_Del	DEL	C	-	-													aggactggcagttgtttgttCtgtctgtgcaggaaattcat							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	98530098	-	-	98530098	7	5	190	1	0	1	0	1	0	0	0	0	4314	922	32	0	831	0	DCBLD2	3	98530098	Frame_Shift_Del	DEL	C	TCGA-64-5779-01A-01D-1625-08	1173173	98530098	99492332	161	151779											
DZIP3	9666	broad.mit.edu	37	chr3	108363233	108363233	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcatctgctttatcctcCtaacaaggagttaccgcaat	7	11	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108363233	A	A	108363233	3	1	190	1	0	0	0	0	1	0	0	0	4905	681	24	2	1414	2	DZIP3	3	108363233	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	9833135	108363233	89659197	162	151780											
MORC1	27136	broad.mit.edu	37	chr3	108723615	108723615	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaaagattaaaggtttatcCtatatgaatatttctccctt	4	6	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108723615	G	G	108723615	1	3	190	0	1	0	0	0	0	0	0	0	9795	696	24	4		4	MORC1	3	108723615	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	360382	108723615	89298815	163	151781											
PHLDB2	90102	broad.mit.edu	37	chr3	111564658	111564658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtacctctcttttcttgCtgtgtgcaggctggcactga	11	10	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111564658	A	A	111564658	1	1	190	0	1	0	0	0	0	0	0	0	11947	812	28	3		3	PHLDB2	3	111564658	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2841043	111564658	86457772	164	151782											
QTRTD1	79691	broad.mit.edu	37	chr3	113784371	113784371	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagttaccttaggtgcaaaaAagagaaatatttttttttgt	7	3	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113784371	T	T	113784371	1	4	190	0	1	0	0	0	0	0	0	0	12994	29	1	5		5	QTRTD1	3	113784371	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2219713	113784371	84238059	165	151783											
DRD3	1814	broad.mit.edu	37	chr3	113866431	113866431	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcaaggggagaggggataGgcatggtgagatggaatggg	21	2	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113866431	A	A	113866431	1	1	190	0	1	0	0	0	0	0	0	0	4798	1015	35	4		4	DRD3	3	113866431	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	82060	113866431	84155999	166	151784											
ARHGAP31	57514	broad.mit.edu	37	chr3	119132757	119132757	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagattcaacaggagctgAaaatcattgaatctgaggag	11	6	3	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119132757	G	G	119132757	3	3	190	1	0	0	0	0	1	0	0	0	882	247	9	5	2027	5	ARHGAP31	3	119132757	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	5266326	119132757	78889673	167	151785											
STXBP5L	9515	broad.mit.edu	37	chr3	121037523	121037523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcattaaatttactgtaaGcaaatttgattccaaatatc	3	6	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121037523	T	T	121037523	1	4	190	0	1	0	0	0	0	0	0	0	15475	986	34	3		3	STXBP5L	3	121037523	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1904766	121037523	76984907	168	151786											
MYLK	4638	broad.mit.edu	37	chr3	123359069	123359069	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatgtttcctctcacactcAgtgtgagaggaaacggccag	11	10	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123359069	C	C	123359069	1	2	190	0	1	0	0	0	0	0	0	0	10150	203	7	5		5	MYLK	3	123359069	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2321546	123359069	74663361	169	151787											
KALRN	8997	broad.mit.edu	37	chr3	124413395	124413395	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacagcagccccttgcttgAcacagcactgagaggctgaa	10	13	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124413395	C	C	124413395	1	2	190	0	1	0	0	0	0	0	0	0	8045	290	10	5		5	KALRN	3	124413395	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1054326	124413395	73609035	170	151788											
ITGB5	3693	broad.mit.edu	37	chr3	124578065	124578065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctgatcccagagcatcCagccctttctgtgggcaact	8	15	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124578065	A	A	124578065	1	1	190	0	1	0	0	0	0	0	0	0	7968	609	21	2		2	ITGB5	3	124578065	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	164670	124578065	73444365	171	151789											
TRIM42	287015	broad.mit.edu	37	chr3	140401341	140401341	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgggagcagcgataccCaggtggatgaagtaaagtca	14	8	1	1	rs149207203	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140401341	A	A	140401341	3	1	190	1	0	0	0	0	1	0	0	0	16641	595	21	2	385	2	TRIM42	3	140401341	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	15823276	140401341	57621089	172	151790											
TRIM42	287015	broad.mit.edu	37	chr3	140401536	140401536	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctcatctgcccagtgtgcGaccgctcgcactgcatgccc	9	18	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140401536	T	T	140401536	3	4	190	1	0	0	0	0	1	0	0	0	16641	1058	37	3	580	3	TRIM42	3	140401536	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	195	140401536	57620894	173	151791											
ATR	545	broad.mit.edu	37	chr3	142215759	142215760	+	Intron	DNP	TC	AT	AT													aaaaatagaaaaatgtagatTcagacagaaaattaagaaat							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	142215760	AT	AT	142215759	1	1	190	0	1	0	0	0	0	0	0	0	1208	1798	62	5		5	ATR	3	142215759	Intron	DNP	TC	TCGA-64-5779-01A-01D-1625-08	1814223	142215759	55806671	174	151792											
PCOLCE2	26577	broad.mit.edu	37	chr3	142545887	142545887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaactatctatatattgatGactcttacttttttttggca	4	7	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142545887	C	C	142545887	1	2	190	0	1	0	0	0	0	0	0	0	11689	1305	45	4		4	PCOLCE2	3	142545887	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	330128	142545887	55476543	175	151793											
SLC9A9	285195	broad.mit.edu	37	chr3	143550975	143550975	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accagcagagttgatggactGaaagttagttttacacagtc	10	7	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143550975	C	C	143550975	3	2	190	1	0	0	0	0	1	0	0	0	14835	1281	45	4	1733	4	SLC9A9	3	143550975	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1005088	143550975	54471455	176	151794											
IGSF10	285313	broad.mit.edu	37	chr3	151165710	151165710	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctccttaagatgagcaaTaggattggactcatcaagtc	10	8	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151165710	G	G	151165710	3	3	190	1	0	0	0	0	1	0	0	0	7667	1406	49	5	5872	5	IGSF10	3	151165710	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	7614735	151165710	46856720	177	151795											
GOLIM4	27333	broad.mit.edu	37	chr3	167754671	167754671	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctgtgttgtaaccttGtggagaatgtgccacctggg	13	9	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167754671	A	A	167754671	4	1	190	1	0	0	0	0	0	1	0	0	6630	1386	48	4	1330	4	GOLIM4	3	167754671	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	16588961	167754671	30267759	178	151796											
NAALADL2	254827	broad.mit.edu	37	chr3	174974333	174974333	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttataaggttggtccagtgaAtgttattcagtggtttggtc	12	4	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174974333	G	G	174974333	1	3	190	0	1	0	0	0	0	0	0	0	10224	116	4	5		5	NAALADL2	3	174974333	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	7219662	174974333	23048097	179	151797											
AHSG	197	broad.mit.edu	37	chr3	186338505	186338505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctggctcacccccagactCccatgtgttactggcagctc	9	16	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186338505	A	A	186338505	3	1	190	1	0	0	0	0	1	0	0	0	420	855	30	3	916	3	AHSG	3	186338505	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	11364172	186338505	11683925	180	151798											
LRRC15	131578	broad.mit.edu	37	chr3	194080398	194080398	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgagggactggcctcggaCattggctgggctgaaacaca	14	9	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	194080398	T	T	194080398	3	4	190	1	0	0	0	0	1	0	0	0	9057	478	17	4	374	4	LRRC15	3	194080398	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	7741893	194080398	3942032	181	151799											
RNF168	165918	broad.mit.edu	37	chr3	196210727	196210727	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagattttctggaattcaaGggagaagccgagatacttcc	10	8	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196210727	A	A	196210727	2	1	190	1	0	0	0	0	0	0	0	1	13570	987	35	4		4	RNF168	3	196210727	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	2130329	196210727	1811703	182	151800											
TBC1D14	57533	broad.mit.edu	37	chr4	6969151	6969151	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcaaagagaatacagaaGgtacacaagatacaaaatca	7	6	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6969151	T	T	6969151	3	4	190	1	0	0	0	0	1	0	0	0	15722	1014	35	2	849	2	TBC1D14	4	6969151	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08		6969151	184185125	183	151801											
ACOX3	8310	broad.mit.edu	37	chr4	8418235	8418235	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctgtgtcgcctccttccAcagtggatgccatcgcgtga	12	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8418235	G	G	8418235	3	3	190	1	0	0	0	0	1	0	0	0	160	159	6	5	2156	5	ACOX3	4	8418235	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	1449084	8418235	182736041	184	151802											
PCDH7	5099	broad.mit.edu	37	chr4	31144138	31144138	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctgactgggaagtgcacTcgtgagtgtgatgagtatgg	16	7	0	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31144138	A	A	31144138	2	1	190	1	0	0	0	0	0	0	0	1	11610	1538	54	5		5	PCDH7	4	31144138	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	22725903	31144138	160010138	185	151803											
GABRA4	2557	broad.mit.edu	37	chr4	46976477	46976477	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttaaaaacagtacttgttCaagaaagatggaataaatga	7	4	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46976477	T	T	46976477	1	4	190	0	1	0	0	0	0	0	0	0	6223	841	29	4		4	GABRA4	4	46976477	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	15832339	46976477	144177799	186	151804											
AASDH	132949	broad.mit.edu	37	chr4	57220956	57220957	+	Missense_Mutation	DNP	CA	AT	AT													gttccaagaagtggaaatccCagttgtacaggcaattcaca							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	57220957	AT	AT	57220956	3	1	190	1	0	0	0	0	1	0	0	0	22	581	21	2	2207	2	AASDH	4	57220956	Missense_Mutation	DNP	CA	TCGA-64-5779-01A-01D-1625-08	10244479	57220956	133933320	187	151805											
POLR2B	5431	broad.mit.edu	37	chr4	57871515	57871515	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtgttactaaagagaaaaGaattaaatatgcaaaggaag	10	2	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57871515	T	T	57871515	3	4	190	1	0	0	0	0	1	0	0	0	12310	942	33	3	1034	3	POLR2B	4	57871515	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	650559	57871515	133282761	188	151806											
TECRL	253017	broad.mit.edu	37	chr4	65188411	65188411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaattaacacttactgtgGtccaactgacttgttgacct	6	10	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65188411	T	T	65188411	3	4	190	1	0	0	0	0	1	0	0	0	15868	1261	44	3	696	3	TECRL	4	65188411	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7316896	65188411	125965865	189	151807											
EPHA5	2044	broad.mit.edu	37	chr4	66439607	66439607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagaaaactgcgagccaGcattacccccgggaccattc	10	14	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66439607	T	T	66439607	1	4	190	0	1	0	0	0	0	0	0	0	5212	986	34	3		3	EPHA5	4	66439607	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1251196	66439607	124714669	190	151808											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69097025	69097025	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctgccatggccatgcCccctccagggagctttttcc	10	17	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69097025	A	A	69097025	2	1	190	1	0	0	0	0	0	0	0	1	16363	610	22	2		2	TMPRSS11B	4	69097025	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	2657418	69097025	122057251	191	151809											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69111384	69111384	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgatgacaaaagttagaacCttctgacgcagcttttgact	9	8	1	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69111384	A	A	69111384	1	1	190	1	0	0	0	0	0	0	0	0	16363	696	24	2		2	TMPRSS11B	4	69111384	Translation_Start_Site	SNP	C	TCGA-64-5779-01A-01D-1625-08	14359	69111384	122042892	192	151810											
CSN1S1	1446	broad.mit.edu	37	chr4	70810750	70810750	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catttaaattactacatcttGatgttctaccaaaggaatga	5	7	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70810750	A	A	70810750	1	1	190	0	1	0	0	0	0	0	0	0	3981	1305	45	4		4	CSN1S1	4	70810750	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1699366	70810750	120343526	193	151811											
MUC7	4589	broad.mit.edu	37	chr4	71346872	71346872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttccccagaatgccacCaccatatcttcaagagaaaa	4	13	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71346872	A	A	71346872	2	1	190	1	0	0	0	0	0	0	0	1	10075	581	21	2		2	MUC7	4	71346872	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	536122	71346872	119807404	194	151812											
GC	2638	broad.mit.edu	37	chr4	72623793	72623793	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcttcagaggcagactcaCagcatttggagaggatgtta	11	7	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72623793	T	T	72623793	3	4	190	1	0	0	0	0	1	0	0	0	6344	478	17	4	651	4	GC	4	72623793	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1276921	72623793	118530483	195	151813											
ADAMTS3	9508	broad.mit.edu	37	chr4	73185608	73185608	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgggctactacaaaagcaGatgaaaaaccatcctcatga	7	10	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73185608	A	A	73185608	3	1	190	1	0	0	0	0	1	0	0	0	267	942	33	4	2502	4	ADAMTS3	4	73185608	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	561815	73185608	117968668	196	151814											
ANKRD56	345079	broad.mit.edu	37	chr4	77816878	77816878	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtattactggttagatactGccatggcttcttcccactgc	9	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77816878	A	A	77816878	4	1	190	1	0	0	0	0	0	1	0	0	682	1328	46	4	260	4	ANKRD56	4	77816878	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	4631270	77816878	113337398	197	151815											
NAA11	84779	broad.mit.edu	37	chr4	80246495	80246495	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagtgtgctgccctgggtCtcctggttctccctggagcc	13	13	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80246495	A	A	80246495	3	1	190	1	0	0	0	0	1	0	0	0	10211	912	32	3	156	3	NAA11	4	80246495	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2429617	80246495	110907781	198	151816											
ANTXR2	118429	broad.mit.edu	37	chr4	80905035	80905035	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttaagataccaacctcCattcttttaattcctccaac	1	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80905035	A	A	80905035	3	1	190	1	0	0	0	0	1	0	0	0	712	594	21	2	348	2	ANTXR2	4	80905035	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	658540	80905035	110249241	199	151817											
SPARCL1	8404	broad.mit.edu	37	chr4	88411812	88411812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaccaaatgataacctaGgtatctaccttttttaagca	4	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88411812	T	T	88411812	1	4	190	0	1	0	0	0	0	0	0	0	15112	1015	35	2		2	SPARCL1	4	88411812	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	7506777	88411812	102742464	200	151818											
TACR3	6870	broad.mit.edu	37	chr4	104577495	104577496	+	Frame_Shift_Ins	INS	-	T	T													ccagtataatgacgataataINStggtaactatgaaaaataag							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104577496	T	T	104577495	7	5	190	1	0	1	1	0	0	0	0	0	15626	446	16	0	665	0	TACR3	4	104577495	Frame_Shift_Ins	INS	-	TCGA-64-5779-01A-01D-1625-08	16165683	104577495	86576781	201	151819											
NPNT	255743	broad.mit.edu	37	chr4	106858268	106858268	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caacggatatatgctcatgcCggatggttcctgctcaagta	10	10	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106858268	G	G	106858268	3	3	190	1	0	0	0	0	1	0	0	0	10685	652	23	4	531	4	NPNT	4	106858268	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2280773	106858268	84296008	202	151820											
LEF1	51176	broad.mit.edu	37	chr4	109010105	109010105	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgcataataaatgtaacAgattcttgtgtgtttccaaa	6	5	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109010105	G	G	109010105	1	3	190	0	1	0	0	0	0	0	0	0	8786	203	7	5		5	LEF1	4	109010105	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2151837	109010105	82144171	203	151821											
PCDH10	57575	broad.mit.edu	37	chr4	134073219	134073219	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggggagctgcgcacagcaCgccgagtcccggccaagcgc	15	17	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134073219	G	G	134073219	3	3	190	1	0	0	0	0	1	0	0	0	11601	536	19	4	1926	4	PCDH10	4	134073219	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	25063114	134073219	57081057	204	151822											
PCDH10	57575	broad.mit.edu	37	chr4	134084244	134084245	+	Missense_Mutation	DNP	CA	AG	AG													cgccaggctgctgattatcgCagcaatctgcatgttcctgg							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	134084245	AG	AG	134084244	3	1	190	1	0	0	0	0	1	0	0	0	11601	697	25	3	2984	3	PCDH10	4	134084244	Missense_Mutation	DNP	CA	TCGA-64-5779-01A-01D-1625-08	11025	134084244	57070032	205	151823											
INPP4B	8821	broad.mit.edu	37	chr4	143044605	143044605	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagatttactgcagttaGcaaacgtatttgttttattt	8	4	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143044605	T	T	143044605	1	4	190	0	1	0	0	0	0	0	0	0	7823	986	34	3		3	INPP4B	4	143044605	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	8960361	143044605	48109671	206	151824											
DCHS2	54798	broad.mit.edu	37	chr4	155312364	155312364	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacatacacctcatatacaCaggcatcagtactttcaaac	3	13	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155312364	G	G	155312364	3	3	190	1	0	0	0	0	1	0	0	0	4321	478	17	4	8860	4	DCHS2	4	155312364	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	12267759	155312364	35841912	207	151825											
NPY1R	4886	broad.mit.edu	37	chr4	164246971	164246971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaattctgtgtaaagaaGgtaaaaatggaaatgataga	12	1	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164246971	T	T	164246971	1	4	190	0	1	0	0	0	0	0	0	0	10703	1015	35	2		2	NPY1R	4	164246971	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	8934607	164246971	26907305	208	151826											
DDX60	55601	broad.mit.edu	37	chr4	169201532	169201532	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggctttcaagcaagcagtTaaccccaccatttcaacctg	6	14	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169201532	A	A	169201532	3	1	190	1	0	0	0	0	1	0	0	0	4411	1751	61	5	3306	5	DDX60	4	169201532	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	4954561	169201532	21952744	209	151827											
DDX60	55601	broad.mit.edu	37	chr4	169213030	169213030	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttacacaaatcttccatctCctgcagggttaagcaattac	5	11	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169213030	A	A	169213030	4	1	190	1	0	0	0	0	0	1	0	0	4411	864	30	3	4352	3	DDX60	4	169213030	Nonsense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	11498	169213030	21941246	210	151828											
VEGFC	7424	broad.mit.edu	37	chr4	177608442	177608442	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatttaggggttgatttctGgggcaggttcttttacatac	13	5	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177608442	A	A	177608442	2	1	190	1	0	0	0	0	0	0	0	1	17279	1335	47	4		4	VEGFC	4	177608442	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	8395412	177608442	13545834	211	151829											
DCTD	1635	broad.mit.edu	37	chr4	183814239	183814239	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcagcagttgcctcgtcacTatcatggtatttatcagaca	8	11	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183814239	A	A	183814239	3	1	190	1	0	0	0	0	1	0	0	0	4338	1522	53	5	141	5	DCTD	4	183814239	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	6205797	183814239	7340037	212	151830											
F11	2160	broad.mit.edu	37	chr4	187197550	187197550	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagaatctcaaaggtaagGagttaacaagtaaggataat	9	4	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187197550	T	T	187197550	1	4	190	0	1	0	0	0	0	0	0	0	5380	1189	41	3		3	F11	4	187197550	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	3383311	187197550	3956726	213	151831											
ZDHHC11	79844	broad.mit.edu	37	chr5	840719	840719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagggtctgcacctgcacCgggaacagggggaggaacag	16	10	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	840719	A	A	840719	2	1	190	1	0	0	0	0	0	0	0	1	17727	639	23	1		1	ZDHHC11	5	840719	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08		840719	180074541	214	151832											
CTNND2	1501	broad.mit.edu	37	chr5	11110843	11110843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaattcccacaggaaaattGtgcagatgcattagtgattt	9	6	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11110843	T	T	11110843	1	4	190	0	1	0	0	0	0	0	0	0	4054	1392	48	3		3	CTNND2	5	11110843	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	10270124	11110843	169804417	215	151833											
ZFR	51663	broad.mit.edu	37	chr5	32415138	32415138	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggatggcaccacagtagcCgcagctgctactggctgtac	12	12	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32415138	A	A	32415138	2	1	190	1	0	0	0	0	0	0	0	1	17785	639	23	1		1	ZFR	5	32415138	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	21304295	32415138	148500122	216	151834											
AGXT2	64902	broad.mit.edu	37	chr5	35035391	35035391	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcatggccagctcattggCttctgagccactgttcacca	9	14	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35035391	T	T	35035391	3	4	190	1	0	0	0	0	1	0	0	0	405	797	28	4	1067	4	AGXT2	5	35035391	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2620253	35035391	145879869	217	151835											
C6	729	broad.mit.edu	37	chr5	41160503	41160503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagaggaggtccagtcaCatcccctttggtaataggtt	13	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41160503	A	A	41160503	1	1	190	0	1	0	0	0	0	0	0	0	2338	493	17	3		3	C6	5	41160503	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	6125112	41160503	139754757	218	151836											
ZNF131	7690	broad.mit.edu	37	chr5	43143484	43143484	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttgttgaaagcagccaCatccatggactgcacatagt	9	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43143484	T	T	43143484	1	4	190	0	1	0	0	0	0	0	0	0	17847	493	17	4		4	ZNF131	5	43143484	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1982981	43143484	137771776	219	151837											
DDX4	54514	broad.mit.edu	37	chr5	55042133	55042133	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcagcagactagtagacatCttgtagagggtgttttaaaa	11	5	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55042133	A	A	55042133	1	1	190	0	1	0	0	0	0	0	0	0	4393	928	32	3		3	DDX4	5	55042133	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	11898649	55042133	125873127	220	151838											
ADAMTS6	11174	broad.mit.edu	37	chr5	64625114	64625114	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagacaaaaaggtagtaaaaTaaggttcagcacagcctttc	8	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64625114	A	A	64625114	1	1	190	0	1	0	0	0	0	0	0	0	270	1421	49	5		5	ADAMTS6	5	64625114	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	9582981	64625114	116290146	221	151839											
C5orf44	80006	broad.mit.edu	37	chr5	64946614	64946614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaaaatgactcagaatcGttaagacatctttctgtttc	5	7	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64946614	T	T	64946614	1	4	190	0	1	0	0	0	0	0	0	0	2326	1160	40	3		3	C5orf44	5	64946614	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	321500	64946614	115968646	222	151840											
MRPS36	92259	broad.mit.edu	37	chr5	68522176	68522176	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttaggtagtcaaaccAcacactccattaataaggtt	5	9	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68522176	G	G	68522176	2	3	190	1	0	0	0	0	0	0	0	1	9939	146	6	5		5	MRPS36	5	68522176	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	3575562	68522176	112393084	223	151841											
IQGAP2	10788	broad.mit.edu	37	chr5	75896573	75896573	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgaaatgtgcattgtaaAcctccatcatgcacatgagg	9	8	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75896573	T	T	75896573	1	4	190	0	1	0	0	0	0	0	0	0	7885	58	2	5		5	IQGAP2	5	75896573	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	7374397	75896573	105018687	224	151842											
PDE8B	8622	broad.mit.edu	37	chr5	76704700	76704700	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctattatcctcagatgtattCtttcttcactccgttaggtt	5	10	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76704700	T	T	76704700	1	4	190	0	1	0	0	0	0	0	0	0	11748	928	32	4		4	PDE8B	5	76704700	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	808127	76704700	104210560	225	151843											
VCAN	1462	broad.mit.edu	37	chr5	82808109	82808109	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccctgtgactgtggccagGgcccagtgtggaggtggtct	16	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82808109	C	C	82808109	3	2	190	1	0	0	0	0	1	0	0	0	17265	1223	43	4	954	4	VCAN	5	82808109	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	6103409	82808109	98107151	226	151844											
VCAN	1462	broad.mit.edu	37	chr5	82868259	82868259	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagaattggagacccaacCagccagacagcttcttttct	8	12	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82868259	A	A	82868259	3	1	190	1	0	0	0	0	1	0	0	0	17265	595	21	2	9806	2	VCAN	5	82868259	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	60150	82868259	98047001	227	151845											
PGGT1B	5229	broad.mit.edu	37	chr5	114571929	114571929	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatctgcactttaagatTatttctttattgtgttctga	6	6	4	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114571929	A	A	114571929	1	1	190	0	1	0	0	0	0	0	0	0	11884	1769	61	5		5	PGGT1B	5	114571929	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	31703670	114571929	66343331	228	151846											
FTMT	94033	broad.mit.edu	37	chr5	121187598	121187598	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagatctgacgcctccagCgcccgaccccacgccaagag	9	18	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121187598	A	A	121187598	1	1	190	0	1	0	0	0	0	0	0	0	6145	783	27	3		3	FTMT	5	121187598	5'Flank	SNP	C	TCGA-64-5779-01A-01D-1625-08	6615669	121187598	59727662	229	151847											
FBN2	2201	broad.mit.edu	37	chr5	127671131	127671131	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatgtacaaaacctgtgtGttttcctttctatacctgca	6	9	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127671131	T	T	127671131	1	4	190	0	1	0	0	0	0	0	0	0	5760	1392	48	3		3	FBN2	5	127671131	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	6483533	127671131	53244129	230	151848											
CHSY3	337876	broad.mit.edu	37	chr5	129243809	129243809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttagatcgctaaacagcaGtaagcctctctacctgggac	8	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129243809	T	T	129243809	3	4	190	1	0	0	0	0	1	0	0	0	3444	1029	36	3	848	3	CHSY3	5	129243809	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1572678	129243809	51671451	231	151849											
HINT1	3094	broad.mit.edu	37	chr5	130500892	130500892	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgagccttggcaatctcatCtgccatctcggcctctctcc	7	17	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130500892	T	T	130500892	3	4	190	1	0	0	0	0	1	0	0	0	7178	913	32	4	385	4	HINT1	5	130500892	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1257083	130500892	50414368	232	151850											
IL4	3565	broad.mit.edu	37	chr5	132015313	132015313	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaaactcacctccatttgTcctcctggaaagaagaaatc	6	12	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132015313	A	A	132015313	1	1	190	0	1	0	0	0	0	0	0	0	7766	1682	58	5		5	IL4	5	132015313	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	1514421	132015313	48899947	233	151851											
WNT8A	7478	broad.mit.edu	37	chr5	137424664	137424664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgacaatgtggaatttgGggaaaggatctccaaactct	11	8	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137424664	T	T	137424664	3	4	190	1	0	0	0	0	1	0	0	0	17523	1232	43	2	434	2	WNT8A	5	137424664	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	5409351	137424664	43490596	234	151852											
WNT8A	7478	broad.mit.edu	37	chr5	137427065	137427065	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggagagtttggtttgggGtctatatctagagggacctt	15	5	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137427065	T	T	137427065	1	4	190	0	1	0	0	0	0	0	0	0	17523	1276	44	3		3	WNT8A	5	137427065	3'UTR	SNP	G	TCGA-64-5779-01A-01D-1625-08	2401	137427065	43488195	235	151853											
PCDHA1	56147	broad.mit.edu	37	chr5	140167627	140167628	+	Missense_Mutation	DNP	GG	TC	TC													agtgagctggtgccgcgattGgtgggtgcgggtcatgtggt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	140167628	TC	TC	140167627	3	4	190	1	0	0	0	0	1	0	0	0	11613	1339	47	2	1754	2	PCDHA1	5	140167627	Missense_Mutation	DNP	GG	TCGA-64-5779-01A-01D-1625-08	2740562	140167627	40747633	236	151854											
PCDHA2	56146	broad.mit.edu	37	chr5	140174650	140174651	+	Nonsense_Mutation	DNP	CC	AG	AG													gagcggccagctccgctactCcgtccccgaggaggccaaac							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	140174651	AG	AG	140174650	4	1	190	1	0	0	0	0	0	1	0	0	11618	855	30	3	103	3	PCDHA2	5	140174650	Nonsense_Mutation	DNP	CC	TCGA-64-5779-01A-01D-1625-08	7023	140174650	40740610	237	151855											
PCDHA8	56140	broad.mit.edu	37	chr5	140222651	140222651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcgagcaagctggtgcCgcggtctgtgggcgcgggcc	19	13	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140222651	A	A	140222651	3	1	190	1	0	0	0	0	1	0	0	0	11624	652	23	1	1747	1	PCDHA8	5	140222651	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	48001	140222651	40692609	238	151856											
PCDHB14	56122	broad.mit.edu	37	chr5	140605248	140605248	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcggcctcggtgggtcGctgctcggtgcccgagggtc	19	13	0	0	rs142658705		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140605248	A	A	140605248	3	1	190	1	0	0	0	0	1	0	0	0	11633	1087	38	4	2173	4	PCDHB14	5	140605248	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	382597	140605248	40310012	239	151857											
PCDHGA2	56113	broad.mit.edu	37	chr5	140718872	140718872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attttaacattctgctggagGataaattgactatttattca	6	5	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140718872	T	T	140718872	3	4	190	1	0	0	0	0	1	0	0	0	11648	1174	41	3	336	3	PCDHGA2	5	140718872	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	113624	140718872	40196388	240	151858											
ARAP3	64411	broad.mit.edu	37	chr5	141051722	141051722	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacagcagcccaatctgggCgggaggacccacagtccgca	13	14	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141051722	T	T	141051722	3	4	190	1	0	0	0	0	1	0	0	0	842	768	27	4	3198	4	ARAP3	5	141051722	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	332850	141051722	39863538	241	151859											
JAKMIP2	9832	broad.mit.edu	37	chr5	147027966	147027966	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgttcatctccaagcaaGgtattcctgtcttctaattt	5	10	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147027966	T	T	147027966	2	4	190	1	0	0	0	0	0	0	0	1	8011	987	35	2		2	JAKMIP2	5	147027966	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	5976244	147027966	33887294	242	151860											
ODZ2	57451	broad.mit.edu	37	chr5	167673641	167673641	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatctgtttaatctggtctaAgcttcccatctttcatgact	5	10	5	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167673641	T	T	167673641	1	4	190	0	1	0	0	0	0	0	0	0	10930	87	3	5		5	ODZ2	5	167673641	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	20645675	167673641	13241619	243	151861											
ODZ2	57451	broad.mit.edu	37	chr5	167689182	167689182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcactggtttgccaccacCacgcccatcattggcaaagg	10	14	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167689182	A	A	167689182	2	1	190	1	0	0	0	0	0	0	0	1	10930	581	21	2		2	ODZ2	5	167689182	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	15541	167689182	13226078	244	151862											
C5orf58	133874	broad.mit.edu	37	chr5	169661207	169661207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggattgacttaaaggttaGtttgttttcattattttgga	9	2	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169661207	T	T	169661207	1	4	190	0	1	0	0	0	0	0	0	0	2336	1044	36	3		3	C5orf58	5	169661207	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1972025	169661207	11254053	245	151863											
RANBP17	64901	broad.mit.edu	37	chr5	170679968	170679968	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actctgagtctggttacatcCttttctatcagtctcgggat	8	10	5	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170679968	G	G	170679968	1	3	190	0	1	0	0	0	0	0	0	0	13135	696	24	4		4	RANBP17	5	170679968	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1018761	170679968	10235292	246	151864											
HMP19	51617	broad.mit.edu	37	chr5	173534486	173534486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatccatgagcccaagcCgcccaagacccagggccact	9	17	1	2	rs151227294	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173534486	A	A	173534486	3	1	190	1	0	0	0	0	1	0	0	0	7312	652	23	1	508	1	HMP19	5	173534486	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2854518	173534486	7380774	247	151865											
FAM153B	202134	broad.mit.edu	37	chr5	175533728	175533728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagatttgggaagttcaGtttaaaaactactaagagtc	9	4	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175533728	T	T	175533728	1	4	190	0	1	0	0	0	0	0	0	0	5507	1044	36	3		3	FAM153B	5	175533728	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1999242	175533728	5381532	248	151866											
HK3	3101	broad.mit.edu	37	chr5	176323160	176323160	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagacccaatggagtccaTgagcttccacagtggaaggt	12	9	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176323160	C	C	176323160	3	2	190	1	0	0	0	0	1	0	0	0	7259	1464	51	5	2842	5	HK3	5	176323160	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	789432	176323160	4592100	249	151867											
GRM6	2916	broad.mit.edu	37	chr5	178416254	178416254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccaccctcaccaccctgGgcagctctcacctgtgcatt	6	20	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178416254	T	T	178416254	1	4	190	0	1	0	0	0	0	0	0	0	6867	1247	43	2		2	GRM6	5	178416254	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2093094	178416254	2499006	250	151868											
MYLK4	340156	broad.mit.edu	37	chr6	2683352	2683352	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcaagctccgtcaaattgTagctctcatcgatgatgcgg	9	10	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2683352	C	C	2683352	3	2	190	1	0	0	0	0	1	0	0	0	10153	1638	57	5	600	5	MYLK4	6	2683352	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08		2683352	168431715	251	151869											
RNF144B	255488	broad.mit.edu	37	chr6	18399717	18399717	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atataatattttctgctttgGacctttctatagggattgag	8	5	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18399717	T	T	18399717	1	4	190	0	1	0	0	0	0	0	0	0	13557	1189	41	3		3	RNF144B	6	18399717	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	15716365	18399717	152715350	252	151870											
BTN1A1	696	broad.mit.edu	37	chr6	26508188	26508188	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttttccagagagactcctGgaagaactcagtaagttctg	10	8	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26508188	C	C	26508188	2	2	190	1	0	0	0	0	0	0	0	1	1569	1335	47	4		4	BTN1A1	6	26508188	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	8108471	26508188	144606879	253	151871											
OR11A1	26531	broad.mit.edu	37	chr6	29394566	29394566	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagatcacaggattgaagaGaggggtgaccacagtgtaga	14	5	1	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29394566	A	A	29394566	3	1	190	1	0	0	0	0	1	0	0	0	11018	942	33	4	98	4	OR11A1	6	29394566	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2886378	29394566	141720501	254	151872											
TRIM26	7726	broad.mit.edu	37	chr6	30156316	30156316	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacctaaggtttaaccactGctaactcagttctgctatgg	7	12	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30156316	C	C	30156316	1	2	190	0	1	0	0	0	0	0	0	0	16624	1334	46	4		4	TRIM26	6	30156316	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	761750	30156316	140958751	255	151873											
MDC1	9656	broad.mit.edu	37	chr6	30675940	30675940	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatccacagtctgcctccCtctgccttgaatccccattg	5	16	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30675940	A	A	30675940	3	1	190	1	0	0	0	0	1	0	0	0	9496	681	24	2	3885	2	MDC1	6	30675940	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	519624	30675940	140439127	256	151874											
VARS2	57176	broad.mit.edu	37	chr6	30884915	30884915	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgactgaagcttttgtgCggctctacaaggcggggttg	15	8	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30884915	T	T	30884915	3	4	190	1	0	0	0	0	1	0	0	0	17251	759	27	4	911	4	VARS2	6	30884915	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	208975	30884915	140230152	257	151875											
LTB	4050	broad.mit.edu	37	chr6	31549951	31549951	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagctgagccagaggggGcaaaagaccacaggcacaac	13	12	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31549951	A	A	31549951	1	1	190	0	1	0	0	0	0	0	0	0	9157	1218	42	4		4	LTB	6	31549951	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	665036	31549951	139565116	258	151876											
BAT5	7920	broad.mit.edu	37	chr6	31674671	31674671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggagcaagagaacttgGcaggctctccccatggcagt	12	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31674671	T	T	31674671	1	4	190	0	1	0	0	0	0	0	0	0	1329	1218	42	3		3	BAT5	6	31674671	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	124720	31674671	139440396	259	151877											
C6orf10	10665	broad.mit.edu	37	chr6	32261527	32261527	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactcatctcactgatttttAgttgggtttcctgtcttttt	6	8	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32261527	G	G	32261527	3	3	190	1	0	0	0	0	1	0	0	0	2340	420	15	5	772	5	C6orf10	6	32261527	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	586856	32261527	138853540	260	151878											
CYP39A1	51302	broad.mit.edu	37	chr6	46555804	46555804	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctcaggaaaatacttTggatttctatgcagccaaaa	8	8	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46555804	C	C	46555804	2	2	190	1	0	0	0	0	0	0	0	1	4210	1799	63	5		5	CYP39A1	6	46555804	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	14294277	46555804	124559263	261	151879											
PLA2G7	7941	broad.mit.edu	37	chr6	46679936	46679936	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataaacttttatgaaaattAgaaacatagttatgagcatt	5	3	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46679936	T	T	46679936	1	4	190	0	1	0	0	0	0	0	0	0	12104	435	15	5		5	PLA2G7	6	46679936	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	124132	46679936	124435131	262	151880											
DEFB112	245915	broad.mit.edu	37	chr6	50016252	50016252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacttattttgttttacctGtgctgattttctctgtccca	5	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50016252	T	T	50016252	3	4	190	1	0	0	0	0	1	0	0	0	4440	1377	48	3	235	3	DEFB112	6	50016252	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3336316	50016252	121098815	263	151881											
HCRTR2	3062	broad.mit.edu	37	chr6	55039655	55039655	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggggctatcaccccctctCcgccccgggctgagaaggct	12	16	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55039655	A	A	55039655	1	1	190	0	1	0	0	0	0	0	0	0	7069	870	30	3		3	HCRTR2	6	55039655	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5023403	55039655	116075412	264	151882											
HCRTR2	3062	broad.mit.edu	37	chr6	55113548	55113548	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctgccttccagccacacTggtcgtggatatcactgaga	9	14	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55113548	A	A	55113548	3	1	190	1	0	0	0	0	1	0	0	0	7069	1580	55	5	341	5	HCRTR2	6	55113548	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	73893	55113548	116001519	265	151883											
HCRTR2	3062	broad.mit.edu	37	chr6	55145137	55145137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtatttgggatgtttGcccatactgaagacagagag	13	6	0	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55145137	T	T	55145137	3	4	190	1	0	0	0	0	1	0	0	0	7069	1319	46	3	1022	3	HCRTR2	6	55145137	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	31589	55145137	115969930	266	151884											
DST	667	broad.mit.edu	37	chr6	56472672	56472672	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accagatgagcttaagacatCgagacattcttttatggctg	9	8	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56472672	A	A	56472672	1	1	190	0	1	0	0	0	0	0	0	0	4823	899	31	3		3	DST	6	56472672	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1327535	56472672	114642395	267	151885											
DST	667	broad.mit.edu	37	chr6	56483840	56483840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgttggtcacacttttgCttaaattcacttaccaaatt	4	9	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56483840	A	A	56483840	1	1	190	0	1	0	0	0	0	0	0	0	4823	796	28	3		3	DST	6	56483840	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	11168	56483840	114631227	268	151886											
DST	667	broad.mit.edu	37	chr6	56485133	56485133	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcgaaaattcaggaggttCtcttccacggcagctctttt	9	10	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56485133	A	A	56485133	1	1	190	0	1	0	0	0	0	0	0	0	4823	912	32	3		3	DST	6	56485133	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1293	56485133	114629934	269	151887											
DST	667	broad.mit.edu	37	chr6	56496092	56496092	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgatcgtagggtagggacTgatgaagaggctgctgcttg	16	6	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56496092	C	C	56496092	2	2	190	1	0	0	0	0	0	0	0	1	4823	1567	55	5		5	DST	6	56496092	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	10959	56496092	114618975	270	151888											
BAI3	577	broad.mit.edu	37	chr6	70064179	70064179	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcaggatcccatcaatgcaGattcttcgagttcgtttcct	8	11	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70064179	T	T	70064179	3	4	190	1	0	0	0	0	1	0	0	0	1305	942	33	3	3612	3	BAI3	6	70064179	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	13568087	70064179	101050888	271	151889											
CD109	135228	broad.mit.edu	37	chr6	74512924	74512924	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatgattactttgactatcTgtctatttttgtgtctaggt	7	5	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74512924	A	A	74512924	1	1	190	0	1	0	0	0	0	0	0	0	2993	1595	55	5		5	CD109	6	74512924	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	4448745	74512924	96602143	272	151890											
COL12A1	1303	broad.mit.edu	37	chr6	75831100	75831100	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgttaaaattatcgtccCcaatgctccaggaggcatca	7	11	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75831100	T	T	75831100	3	4	190	1	0	0	0	0	1	0	0	0	3701	623	22	4	2279	4	COL12A1	6	75831100	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1318176	75831100	95283967	273	151891											
CYB5R4	51167	broad.mit.edu	37	chr6	84574030	84574031	+	Frame_Shift_Ins	INS	-	T	T													cacaacaaaaaagatgattgINSttggatatgcataagaggta							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84574031	T	T	84574030	7	5	190	1	0	1	1	0	0	0	0	0	4162	1377	48	0	218	0	CYB5R4	6	84574030	Frame_Shift_Ins	INS	-	TCGA-64-5779-01A-01D-1625-08	8742930	84574030	86541037	274	151892											
ASCC3	10973	broad.mit.edu	37	chr6	101248359	101248359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattgggtttagcattttctCctaaaatttttttacaattg	5	5	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101248359	A	A	101248359	3	1	190	1	0	0	0	0	1	0	0	0	1037	855	30	3	5812	3	ASCC3	6	101248359	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	16674329	101248359	69866708	275	151893											
C6orf186	728464	broad.mit.edu	37	chr6	110620165	110620165	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaaaatgcttcccagttttCtggtgttgctatgtggtttt	9	7	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110620165	A	A	110620165	3	1	190	1	0	0	0	0	1	0	0	0	2370	913	32	3	362	3	C6orf186	6	110620165	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	9371806	110620165	60494902	276	151894											
COL10A1	1300	broad.mit.edu	37	chr6	116442848	116442848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccggtccagggattccaGgtggtcctggtgggccccgg	17	13	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116442848	T	T	116442848	3	4	190	1	0	0	0	0	1	0	0	0	3698	1000	35	2	1615	2	COL10A1	6	116442848	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	5822683	116442848	54672219	277	151895											
RNF217	154214	broad.mit.edu	37	chr6	125404010	125404010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taattttttcttatccctagGtttatttgtatttcctatct	3	7	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125404010	T	T	125404010	2	4	190	1	0	0	0	0	0	0	0	1	13592	1275	44	3		3	RNF217	6	125404010	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	8961162	125404010	45711057	278	151896											
TMEM200A	114801	broad.mit.edu	37	chr6	130762587	130762587	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagtgaatccttccagccCgtcagcacagtgctaccaag	8	15	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130762587	T	T	130762587	2	4	190	1	0	0	0	0	0	0	0	1	16246	639	23	4		4	TMEM200A	6	130762587	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	5358577	130762587	40352480	279	151897											
HIVEP2	3097	broad.mit.edu	37	chr6	143091240	143091240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaagtggtgcccgggaacCggaaagcatctccttgctgg	15	11	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143091240	A	A	143091240	3	1	190	1	0	0	0	0	1	0	0	0	7254	652	23	1	2728	1	HIVEP2	6	143091240	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	12328653	143091240	28023827	280	151898											
UTRN	7402	broad.mit.edu	37	chr6	144844215	144844215	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattcatgaaaaacagccaGatgtcatccttgaagcctct	6	11	4	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144844215	T	T	144844215	3	4	190	1	0	0	0	0	1	0	0	0	17230	942	33	3	5955	3	UTRN	6	144844215	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1752975	144844215	26270852	281	151899											
RAET1L	154064	broad.mit.edu	37	chr6	150342443	150342443	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccttgcctctagactctTgaggggtaagatgaccttcc	11	11	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150342443	A	A	150342443	1	1	190	0	1	0	0	0	0	0	0	0	13109	1827	63	5		5	RAET1L	6	150342443	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	5498228	150342443	20772624	282	151900											
MTHFD1L	25902	broad.mit.edu	37	chr6	151420688	151420688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctcagaccccttgtgaaGcccaagatcgtcaaaaagag	9	13	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151420688	T	T	151420688	1	4	190	0	1	0	0	0	0	0	0	0	10022	986	34	3		3	MTHFD1L	6	151420688	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1078245	151420688	19694379	283	151901											
RBM16	22828	broad.mit.edu	37	chr6	155145563	155145563	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatttagattatcatttaaGttgtgtttcttccagattta	5	5	2	2	rs144654888	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155145563	A	A	155145563	1	1	190	0	1	0	0	0	0	0	0	0	13226	1044	36	4		4	RBM16	6	155145563	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	3724875	155145563	15969504	284	151902											
TIAM2	26230	broad.mit.edu	37	chr6	155465670	155465670	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttttaaaaaagtgtgtcaCttaccctcccagtcctttcc	5	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155465670	G	G	155465670	1	3	190	0	1	0	0	0	0	0	0	0	16014	580	20	4		4	TIAM2	6	155465670	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	320107	155465670	15649397	285	151903											
TCP10L2	401285	broad.mit.edu	37	chr6	167587502	167587502	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatcatttgcgtcgtgtaaAaatagcgtccccgtaaagat	9	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167587502	T	T	167587502	1	4	190	0	1	0	0	0	0	0	0	0	15834	29	1	5		5	TCP10L2	6	167587502	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	12121832	167587502	3527565	286	151904											
MLLT4	4301	broad.mit.edu	37	chr6	168297699	168297699	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctgacattccaggaggcAtaacgtattgtacagagcct	9	10	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168297699	G	G	168297699	1	3	190	0	1	0	0	0	0	0	0	0	9722	232	8	5		5	MLLT4	6	168297699	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	710197	168297699	2817368	287	151905											
CHST12	55501	broad.mit.edu	37	chr7	2473357	2473357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactccaggtggaccggcaGctccgcttccccccgagcta	10	18	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2473357	T	T	2473357	3	4	190	1	0	0	0	0	1	0	0	0	3431	962	34	3	1085	3	CHST12	7	2473357	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08		2473357	156665306	288	151906											
CYTH3	9265	broad.mit.edu	37	chr7	6210909	6210909	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatgcgatcaatcttctgCgcctccccgggcagcctgaa	9	15	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6210909	T	T	6210909	2	4	190	1	0	0	0	0	0	0	0	1	4238	755	27	4		4	CYTH3	7	6210909	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	3737552	6210909	152927754	289	151907											
PHF14	9678	broad.mit.edu	37	chr7	11046418	11046418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacacctttcaacactGccttcttggccttgaaagcc	8	13	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11046418	T	T	11046418	1	4	190	0	1	0	0	0	0	0	0	0	11920	1334	46	3		3	PHF14	7	11046418	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	4835509	11046418	148092245	290	151908											
PHF14	9678	broad.mit.edu	37	chr7	11046529	11046529	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcatttcttgtcctggcgCggtggctcacacctttaatc	9	12	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11046529	T	T	11046529	1	4	190	0	1	0	0	0	0	0	0	0	11920	783	27	4		4	PHF14	7	11046529	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	111	11046529	148092134	291	151909											
TMEM106B	54664	broad.mit.edu	37	chr7	12270859	12270859	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagttgggttttaagccttAcaagagtgctatgagtaaat	10	5	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12270859	G	G	12270859	1	3	190	0	1	0	0	0	0	0	0	0	16144	406	14	5		5	TMEM106B	7	12270859	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1224330	12270859	146867804	292	151910											
TWISTNB	221830	broad.mit.edu	37	chr7	19738228	19738228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgctagctttgtggtaCcactgtccacttcatatgtc	7	12	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19738228	A	A	19738228	3	1	190	1	0	0	0	0	1	0	0	0	16910	507	18	3	292	3	TWISTNB	7	19738228	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	7467369	19738228	139400435	293	151911											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31144584	31144584	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctttctggggagcagacaGgggaaccacctgttggccac	15	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31144584	A	A	31144584	1	1	190	0	1	0	0	0	0	0	0	0	303	1015	35	4		4	ADCYAP1R1	7	31144584	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	11406356	31144584	127994079	294	151912											
URGCP	55665	broad.mit.edu	37	chr7	43959291	43959291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagaggtggaccccaccCaggtccacaagagcctgcag	14	13	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43959291	A	A	43959291	1	1	190	0	1	0	0	0	0	0	0	0	17152	609	21	2		2	URGCP	7	43959291	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	12814707	43959291	115179372	295	151913											
UBE2D4	51619	broad.mit.edu	37	chr7	43982358	43982358	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctgtaatttagcagtgCgttttcagtagaatgacatg	11	6	1	2	rs146469919	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43982358	T	T	43982358	1	4	190	0	1	0	0	0	0	0	0	0	16977	783	27	4		4	UBE2D4	7	43982358	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	23067	43982358	115156305	296	151914											
MYL7	58498	broad.mit.edu	37	chr7	44179350	44179350	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctctgcttccaccacgGtgctcctcatctggctgggc	10	17	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44179350	T	T	44179350	1	4	190	0	1	0	0	0	0	0	0	0	10147	1276	44	3		3	MYL7	7	44179350	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	196992	44179350	114959313	297	151915											
GCK	2645	broad.mit.edu	37	chr7	44192964	44192964	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acactggcctcttcatgggtCtccagcctcaggccgcggtc	11	16	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44192964	T	T	44192964	2	4	190	1	0	0	0	0	0	0	0	1	6355	912	32	4		4	GCK	7	44192964	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	13614	44192964	114945699	298	151916											
NPC1L1	29881	broad.mit.edu	37	chr7	44579884	44579884	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgggttcttcccacattCgtcatagaaggcgcagtagc	10	12	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44579884	T	T	44579884	3	4	190	1	0	0	0	0	1	0	0	0	10666	893	31	4	4043	4	NPC1L1	7	44579884	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	386920	44579884	114558779	299	151917											
TNS3	64759	broad.mit.edu	37	chr7	47409269	47409269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcagggatgaaagtgagCctcacaccctctgaatgggc	12	11	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47409269	A	A	47409269	1	1	190	0	1	0	0	0	0	0	0	0	16467	754	26	3		3	TNS3	7	47409269	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2829385	47409269	111729394	300	151918											
EGFR	1956	broad.mit.edu	37	chr7	55218933	55218933	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggcccgggaaagggcgtCatcagtttctcatcatttca	10	11	6	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55218933	T	T	55218933	1	4	190	0	1	0	0	0	0	0	0	0	5007	841	29	4		4	EGFR	7	55218933	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	7809664	55218933	103919730	301	151919											
ZNF107	51427	broad.mit.edu	37	chr7	64126488	64126488	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacgcagctggagcggacagGacggcttccgggatttggcg	17	11	0	0	rs111486654		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64126488	C	C	64126488	1	2	190	0	1	0	0	0	0	0	0	0	17841	1189	41	4		4	ZNF107	7	64126488	5'Flank	SNP	G	TCGA-64-5779-01A-01D-1625-08	8907555	64126488	95012175	302	151920											
ASL	435	broad.mit.edu	37	chr7	65548112	65548112	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagacctgctccacgctcTcgggcctcctctgggagctc	12	17	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65548112	A	A	65548112	3	1	190	1	0	0	0	0	1	0	0	0	1048	1551	54	5	415	5	ASL	7	65548112	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	1421624	65548112	93590551	303	151921											
POM121	9883	broad.mit.edu	37	chr7	72398843	72398843	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccatagagatagtataagGtcccagaaatatgagaatac	8	7	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72398843	A	A	72398843	1	1	190	0	1	0	0	0	0	0	0	0	12334	1276	44	4		4	POM121	7	72398843	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	6850731	72398843	86739820	304	151922											
CACNA2D1	781	broad.mit.edu	37	chr7	81579777	81579777	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattccaatgatataccaCagggagggatttaatccaga	10	7	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81579777	A	A	81579777	2	1	190	1	0	0	0	0	0	0	0	1	2574	465	17	3		3	CACNA2D1	7	81579777	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	9180934	81579777	77558886	305	151923											
CDK14	5218	broad.mit.edu	37	chr7	90613295	90613295	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcacataatatacccatgtAacaaacctgcacgtgtaccc	4	13	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90613295	T	T	90613295	1	4	190	0	1	0	0	0	0	0	0	0	3160	377	13	5		5	CDK14	7	90613295	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	9033518	90613295	68525368	306	151924											
CCDC132	55610	broad.mit.edu	37	chr7	92977954	92977954	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgttaaaaaatacttAtacgaaagcatgacaggctc	7	6	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92977954	T	T	92977954	1	4	190	0	1	0	0	0	0	0	0	0	2793	464	16	5		5	CCDC132	7	92977954	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2364659	92977954	66160709	307	151925											
LMTK2	22853	broad.mit.edu	37	chr7	97814282	97814282	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttactcggatcccgagagaaAgcccatttctgtggcatttc	9	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97814282	T	T	97814282	1	4	190	0	1	0	0	0	0	0	0	0	8933	87	3	5		5	LMTK2	7	97814282	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	4836328	97814282	61324381	308	151926											
VGF	7425	broad.mit.edu	37	chr7	100806508	100806508	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggtggtacggccctggCgggtacacctcgtcctcctc	13	14	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100806508	T	T	100806508	2	4	190	1	0	0	0	0	0	0	0	1	17284	755	27	4		4	VGF	7	100806508	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	2992226	100806508	58332155	309	151927											
RELN	5649	broad.mit.edu	37	chr7	103205881	103205881	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccattgttcagagaatacTggagctgtacactgtgggag	13	7	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103205881	G	G	103205881	3	3	190	1	0	0	0	0	1	0	0	0	13328	1580	55	5	5456	5	RELN	7	103205881	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	2399373	103205881	55932782	310	151928											
NAMPT	10135	broad.mit.edu	37	chr7	105909741	105909741	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccactgtgattggataccaGgactgaacaagaatagtctg	11	8	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105909741	A	A	105909741	2	1	190	1	0	0	0	0	0	0	0	1	10243	987	35	4		4	NAMPT	7	105909741	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	2703860	105909741	53228922	311	151929											
LAMB4	22798	broad.mit.edu	37	chr7	107677874	107677874	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcttttgggctccatcTgcttcttcatttaacctgtt	6	10	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107677874	C	C	107677874	2	2	190	1	0	0	0	0	0	0	0	1	8685	1567	55	5		5	LAMB4	7	107677874	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	1768133	107677874	51460789	312	151930											
GRM8	2918	broad.mit.edu	37	chr7	126173981	126173981	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagccttccatttttcccCcatttataatatcctaatcc	2	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126173981	A	A	126173981	1	1	190	0	1	0	0	0	0	0	0	0	6869	638	22	2		2	GRM8	7	126173981	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	18496107	126173981	32964682	313	151931											
DGKI	9162	broad.mit.edu	37	chr7	137082166	137082166	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactcggaaggtcctaaatAagaagaaagcaagatgaccg	10	7	0	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137082166	T	T	137082166	1	4	190	0	1	0	0	0	0	0	0	0	4511	377	13	5		5	DGKI	7	137082166	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	10908185	137082166	22056497	314	151932											
DGKI	9162	broad.mit.edu	37	chr7	137270015	137270015	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtttctttccacatggagGttccagcgatctagctgtac	11	10	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137270015	C	C	137270015	3	2	190	1	0	0	0	0	1	0	0	0	4511	1252	44	4	1778	4	DGKI	7	137270015	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	187849	137270015	21868648	315	151933											
CREB3L2	64764	broad.mit.edu	37	chr7	137570117	137570117	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaggggccaggccaggggCggtcactgtgctaccctgct	16	13	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137570117	T	T	137570117	1	4	190	0	1	0	0	0	0	0	0	0	3889	783	27	4		4	CREB3L2	7	137570117	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	300102	137570117	21568546	316	151934											
SVOPL	136306	broad.mit.edu	37	chr7	138333645	138333645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgcactgcagcctggaCaacaaagagagactctgtct	9	13	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138333645	A	A	138333645	1	1	190	0	1	0	0	0	0	0	0	0	15542	493	17	3		3	SVOPL	7	138333645	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	763528	138333645	20805018	317	151935											
MGAM	8972	broad.mit.edu	37	chr7	141750658	141750658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtcacttatgattctaaCctgaaggtaaaaacccattt	5	9	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141750658	A	A	141750658	3	1	190	1	0	0	0	0	1	0	0	0	9634	506	18	3	2889	3	MGAM	7	141750658	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3417013	141750658	17388005	318	151936											
TRPV6	55503	broad.mit.edu	37	chr7	142572553	142572553	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtcatacacacagcactaGagagggggctctggagctaa	14	9	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142572553	C	C	142572553	1	2	190	0	1	0	0	0	0	0	0	0	16725	957	33	4		4	TRPV6	7	142572553	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	821895	142572553	16566110	319	151937											
ZNF786	136051	broad.mit.edu	37	chr7	148767932	148767932	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagaaaggcatctccccGctgtgcagcagctggtgggc	15	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148767932	A	A	148767932	2	1	190	1	0	0	0	0	0	0	0	1	18287	1078	38	4		4	ZNF786	7	148767932	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	6195379	148767932	10370731	320	151938											
RHEB	6009	broad.mit.edu	37	chr7	151181738	151181738	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgaggggttttcttggcAtagctggtacttttaaaaat	10	6	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151181738	G	G	151181738	1	3	190	0	1	0	0	0	0	0	0	0	13437	232	8	5		5	RHEB	7	151181738	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2413806	151181738	7956925	321	151939											
MLL3	58508	broad.mit.edu	37	chr7	151970755	151970755	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattttcagtaaatacattgGttgaagtttaaaagtctatc	6	4	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151970755	A	A	151970755	1	1	190	0	1	0	0	0	0	0	0	0	9715	1276	44	4		4	MLL3	7	151970755	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	789017	151970755	7167908	322	151940											
DLGAP2	9228	broad.mit.edu	37	chr8	1626405	1626405	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgttttaaacgttctaacAgcgtcacggccgccgtccaa	9	13	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1626405	T	T	1626405	3	4	190	1	0	0	0	0	1	0	0	0	4600	188	7	5	2104	5	DLGAP2	8	1626405	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08		1626405	144737617	323	151941											
CSMD1	64478	broad.mit.edu	37	chr8	3000045	3000045	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtcactataaaagtggatGagggtttcatgcgttgtgct	13	5	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3000045	T	T	3000045	2	4	190	1	0	0	0	0	0	0	0	1	3978	1277	45	3		3	CSMD1	8	3000045	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	1373640	3000045	143363977	324	151942											
CSMD1	64478	broad.mit.edu	37	chr8	3038664	3038664	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggaaaccagcagctgccAcactaatgtcagactggaaa	11	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3038664	T	T	3038664	3	4	190	1	0	0	0	0	1	0	0	0	3978	159	6	5	5137	5	CSMD1	8	3038664	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	38619	3038664	143325358	325	151943											
CSMD1	64478	broad.mit.edu	37	chr8	3474274	3474274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccattttctggaatcccaGgatctggacacatgtcagag	9	10	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3474274	T	T	3474274	3	4	190	1	0	0	0	0	1	0	0	0	3978	1000	35	2	9704	2	CSMD1	8	3474274	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	435610	3474274	142889748	326	151944											
RP1L1	94137	broad.mit.edu	37	chr8	10464888	10464888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgagtttctccttctgaCtctggctgggcctccccttc	8	16	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10464888	A	A	10464888	3	1	190	1	0	0	0	0	1	0	0	0	13644	564	20	3	486	3	RP1L1	8	10464888	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	6990614	10464888	135899134	327	151945											
RP1L1	94137	broad.mit.edu	37	chr8	10466260	10466260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcccccaactcactgcccGcactggtttcactgttgtgg	8	16	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10466260	T	T	10466260	3	4	190	1	0	0	0	0	1	0	0	0	13644	1087	38	3	1858	3	RP1L1	8	10466260	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1372	10466260	135897762	328	151946											
C8orf74	203076	broad.mit.edu	37	chr8	10555161	10555161	+	Frame_Shift_Del	DEL	C	-	-													gggaacaagcttagagattaCcggggccatttcaacaccac							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10555161	-	-	10555161	7	5	190	1	0	1	0	1	0	0	0	0	2462	518	18	0	304	0	C8orf74	8	10555161	Frame_Shift_Del	DEL	C	TCGA-64-5779-01A-01D-1625-08	88901	10555161	135808861	329	151947											
C8orf74	203076	broad.mit.edu	37	chr8	10557718	10557718	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgaggctccccagccctgCtcatcggccttcccctttcc	9	20	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10557718	A	A	10557718	1	1	190	0	1	0	0	0	0	0	0	0	2462	812	28	3		3	C8orf74	8	10557718	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2557	10557718	135806304	330	151948											
XKR6	286046	broad.mit.edu	37	chr8	10756538	10756538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgatctaaaggaggagGgagaaagaaacacagaatca	11	7	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10756538	T	T	10756538	1	4	190	0	1	0	0	0	0	0	0	0	17562	1247	43	2		2	XKR6	8	10756538	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	198820	10756538	135607484	331	151949											
USP17L2	377630	broad.mit.edu	37	chr8	11994734	11994734	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttccctttggatctcctGgtcctcccttgcagagaagc	8	14	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11994734	T	T	11994734	2	4	190	1	0	0	0	0	0	0	0	1	17174	1335	47	2		2	USP17L2	8	11994734	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	1238196	11994734	134369288	332	151950											
DOCK5	80005	broad.mit.edu	37	chr8	25216687	25216687	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttcccacgcacctccGgtgctatgtggctgtccaca	8	16	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25216687	T	T	25216687	1	4	190	0	1	0	0	0	0	0	0	0	4730	1131	39	1		1	DOCK5	8	25216687	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	13221953	25216687	121147335	333	151951											
DPYSL2	1808	broad.mit.edu	37	chr8	26484678	26484678	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggagatgattgtctttgtGaacaggaagatggaagtccc	15	5	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26484678	T	T	26484678	1	4	190	0	1	0	0	0	0	0	0	0	4787	1305	45	3		3	DPYSL2	8	26484678	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1267991	26484678	119879344	334	151952											
EPHX2	2053	broad.mit.edu	37	chr8	27401287	27401287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgattccggccctgatgGtcacggcggagaaggacttc	13	12	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27401287	T	T	27401287	3	4	190	1	0	0	0	0	1	0	0	0	5222	1261	44	3	1537	3	EPHX2	8	27401287	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	916609	27401287	118962735	335	151953											
NRG1	3084	broad.mit.edu	37	chr8	32621581	32621581	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaggagtatgaaacgacCcaagagtacgagccagccca	12	10	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32621581	A	A	32621581	2	1	190	1	0	0	0	0	0	0	0	1	10742	610	22	2		2	NRG1	8	32621581	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	5220294	32621581	113742441	336	151954											
KCNU1	157855	broad.mit.edu	37	chr8	36666331	36666331	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtaagcatctcatcacaatCcctagtggtgtctgttgtta	9	9	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36666331	A	A	36666331	1	1	190	0	1	0	0	0	0	0	0	0	8163	870	30	3		3	KCNU1	8	36666331	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4044750	36666331	109697691	337	151955											
ANK1	286	broad.mit.edu	37	chr8	41550261	41550261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcagtagcagcgcaggcGcccctctcgggggtcattca	13	14	3	0	rs148275567	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41550261	T	T	41550261	3	4	190	1	0	0	0	0	1	0	0	0	620	1087	38	3	2256	3	ANK1	8	41550261	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	4883930	41550261	104813761	338	151956											
SLC20A2	6575	broad.mit.edu	37	chr8	42275403	42275403	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacagggacggtcacgaacCaggccacgaagatgttccga	12	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42275403	G	G	42275403	3	3	190	1	0	0	0	0	1	0	0	0	14552	595	21	4	85	4	SLC20A2	8	42275403	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	725142	42275403	104088619	339	151957											
POTEA	340441	broad.mit.edu	37	chr8	43152285	43152285	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctctgataaaggtatgcaGtagccaactatatcagcatg	9	8	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43152285	C	C	43152285	1	2	190	0	1	0	0	0	0	0	0	0	12356	1044	36	4		4	POTEA	8	43152285	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	876882	43152285	103211737	340	151958											
PRKDC	5591	broad.mit.edu	37	chr8	48775078	48775078	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgattctctcctgccatgttCtctgtaaatgcatcgtagca	7	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48775078	A	A	48775078	3	1	190	1	0	0	0	0	1	0	0	0	12627	912	32	3	6787	3	PRKDC	8	48775078	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5622793	48775078	97588944	341	151959											
PXDNL	137902	broad.mit.edu	37	chr8	52321549	52321549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctcgtgcatagactgaatCcaccgtcgcagagggacggc	12	13	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52321549	A	A	52321549	3	1	190	1	0	0	0	0	1	0	0	0	12956	855	30	3	1784	3	PXDNL	8	52321549	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3546471	52321549	94042473	342	151960											
ST18	9705	broad.mit.edu	37	chr8	53076548	53076548	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgttaggggttcatacctGtgggcctggtcaggacactg	14	9	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53076548	A	A	53076548	2	1	190	1	0	0	0	0	0	0	0	1	15330	1368	48	4		4	ST18	8	53076548	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	754999	53076548	93287474	343	151961											
RGS20	8601	broad.mit.edu	37	chr8	54764487	54764487	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctttcccaagataaccaaGagtgcctccagaaacatttc	6	12	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54764487	A	A	54764487	3	1	190	1	0	0	0	0	1	0	0	0	13412	943	33	4	30	4	RGS20	8	54764487	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1687939	54764487	91599535	344	151962											
RP1	6101	broad.mit.edu	37	chr8	55539627	55539627	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaacctagctagaaaaaGgcaaagtgtagaggctgcca	10	7	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55539627	A	A	55539627	3	1	190	1	0	0	0	0	1	0	0	0	13643	1000	35	4	3195	4	RP1	8	55539627	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	775140	55539627	90824395	345	151963											
MOS	4342	broad.mit.edu	37	chr8	57026479	57026479	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggactgctgcagggccgCgcgtccaccgatggggaaaa	17	11	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57026479	T	T	57026479	2	4	190	1	0	0	0	0	0	0	0	1	9806	755	27	4		4	MOS	8	57026479	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	1486852	57026479	89337543	346	151964											
PDE7A	5150	broad.mit.edu	37	chr8	66637187	66637187	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaatataaagagaaaataTaagactttcaattaactatt	4	3	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66637187	C	C	66637187	1	2	190	0	1	0	0	0	0	0	0	0	11745	1421	49	5		5	PDE7A	8	66637187	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	9610708	66637187	79726835	347	151965											
MYBL1	4603	broad.mit.edu	37	chr8	67488646	67488646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaataaagttaatgctGtaacctagttaaatctgctc	6	7	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67488646	T	T	67488646	1	4	190	0	1	0	0	0	0	0	0	0	10103	1392	48	3		3	MYBL1	8	67488646	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	851459	67488646	78875376	348	151966											
SGK3	23678	broad.mit.edu	37	chr8	67763155	67763155	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccatttaatcctaatgtGgtaagtatatatccaaatct	4	9	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67763155	T	T	67763155	2	4	190	1	0	0	0	0	0	0	0	1	14325	1362	47	2		2	SGK3	8	67763155	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	274509	67763155	78600867	349	151967											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885456	88885456	+	Frame_Shift_Del	DEL	G	-	-													cagcgcagatcaatgccaaaGatctccccagagcgacagcc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88885456	-	-	88885456	7	5	190	1	0	1	0	1	0	0	0	0	4305	932	33	0	447	0	DCAF4L2	8	88885456	Frame_Shift_Del	DEL	G	TCGA-64-5779-01A-01D-1625-08	21122301	88885456	57478566	350	151968											
RUNX1T1	862	broad.mit.edu	37	chr8	93003969	93003969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaaacggtaatgctgagGtggaggtggggtagggtgag	19	4	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93003969	T	T	93003969	3	4	190	1	0	0	0	0	1	0	0	0	13858	1261	44	3	949	3	RUNX1T1	8	93003969	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	4118513	93003969	53360053	351	151969											
SNX31	169166	broad.mit.edu	37	chr8	101620667	101620667	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cataatttgtttagtggctcCaagccaacatggcctatgat	8	9	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101620667	G	G	101620667	1	3	190	0	1	0	0	0	0	0	0	0	15015	609	21	4		4	SNX31	8	101620667	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	8616698	101620667	44743355	352	151970											
SNX31	169166	broad.mit.edu	37	chr8	101648076	101648076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaattttgtggcatataGcttacattgcaataaatctg	9	5	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101648076	T	T	101648076	1	4	190	0	1	0	0	0	0	0	0	0	15015	986	34	3		3	SNX31	8	101648076	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	27409	101648076	44715946	353	151971											
DPYS	1807	broad.mit.edu	37	chr8	105405219	105405220	+	Splice_Site	DNP	CC	AA	AA													tgagtttttgctgagatagtCctatatttgtgaaaacaaca							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	105405220	AA	AA	105405219	5	1	190	1	0	0	0	0	0	0	1	0	4786	869	30	3	331	3	DPYS	8	105405219	Splice_Site	DNP	CC	TCGA-64-5779-01A-01D-1625-08	3757143	105405219	40958803	354	151972											
SYBU	55638	broad.mit.edu	37	chr8	110587660	110587660	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtagggcaccacgtcggtCtgaacggctcgctccaccac	11	16	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110587660	G	G	110587660	3	3	190	1	0	0	0	0	1	0	0	0	15545	912	32	4	528	4	SYBU	8	110587660	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5182441	110587660	35776362	355	151973											
CSMD3	114788	broad.mit.edu	37	chr8	113293308	113293308	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaacagttaaaaccttacAtggttttattaattacaaaa	3	6	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113293308	G	G	113293308	1	3	190	0	1	0	0	0	0	0	0	0	3980	232	8	5		5	CSMD3	8	113293308	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2705648	113293308	33070714	356	151974											
CSMD3	114788	broad.mit.edu	37	chr8	113841835	113841835	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggtagtagtgggagcgatCaatgtaaaacaataatttga	11	4	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113841835	A	A	113841835	1	1	190	0	1	0	0	0	0	0	0	0	3980	841	29	3		3	CSMD3	8	113841835	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	548527	113841835	32522187	357	151975											
ANXA13	312	broad.mit.edu	37	chr8	124748012	124748012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggctgtggggcctctgGctctccattccgtgatgggt	14	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124748012	T	T	124748012	1	4	190	0	1	0	0	0	0	0	0	0	717	1203	42	3		3	ANXA13	8	124748012	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	10906177	124748012	21616010	358	151976											
FER1L6	654463	broad.mit.edu	37	chr8	125076538	125076538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattaggtccctgaaacgaCcaccctgtgatgcagcccag	10	13	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125076538	A	A	125076538	1	1	190	0	1	0	0	0	0	0	0	0	5872	522	18	3		3	FER1L6	8	125076538	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	328526	125076538	21287484	359	151977											
FER1L6	654463	broad.mit.edu	37	chr8	125115560	125115560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaactcacagtaagtgacAgctatgggaggtggaggaga	15	5	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125115560	T	T	125115560	1	4	190	0	1	0	0	0	0	0	0	0	5872	203	7	5		5	FER1L6	8	125115560	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	39022	125115560	21248462	360	151978											
ASAP1	50807	broad.mit.edu	37	chr8	131092098	131092098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatttctagaattctgtcCattgcatcaatggatccaac	5	11	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131092098	A	A	131092098	1	1	190	0	1	0	0	0	0	0	0	0	1014	609	21	2		2	ASAP1	8	131092098	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5976538	131092098	15271924	361	151979											
NDRG1	10397	broad.mit.edu	37	chr8	134254109	134254109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggctagatcctccaggCtgccacatgccctccacaca	9	16	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134254109	A	A	134254109	1	1	190	0	1	0	0	0	0	0	0	0	10346	812	28	3		3	NDRG1	8	134254109	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3162011	134254109	12109913	362	151980											
FAM135B	51059	broad.mit.edu	37	chr8	139149430	139149430	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagttttacacatttcaatCctggctgaatgaaatggcac	8	9	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139149430	A	A	139149430	3	1	190	1	0	0	0	0	1	0	0	0	5495	854	30	3	253	3	FAM135B	8	139149430	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4895321	139149430	7214592	363	151981											
FAM135B	51059	broad.mit.edu	37	chr8	139158277	139158277	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaaagtctttaccagccgGaggtctgcactgttccctaa	9	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139158277	T	T	139158277	2	4	190	1	0	0	0	0	0	0	0	1	5495	1161	41	3		3	FAM135B	8	139158277	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	8847	139158277	7205745	364	151982											
FAM135B	51059	broad.mit.edu	37	chr8	139255338	139255338	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagataattgaaagggtgAaaaaggaggtaaagaaagtg	13	0	0	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139255338	G	G	139255338	1	3	190	0	1	0	0	0	0	0	0	0	5495	261	9	5		5	FAM135B	8	139255338	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	97061	139255338	7108684	365	151983											
COL22A1	169044	broad.mit.edu	37	chr8	139606214	139606214	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagccctgttccttctccgCcctccaggagtacacggagc	9	18	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139606214	G	G	139606214	1	3	190	0	1	0	0	0	0	0	0	0	3713	754	26	4		4	COL22A1	8	139606214	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	350876	139606214	6757808	366	151984											
TRAPPC9	83696	broad.mit.edu	37	chr8	141415595	141415595	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaataattaagagacactGcagcattacacaatgtaaaa	5	6	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141415595	A	A	141415595	1	1	190	0	1	0	0	0	0	0	0	0	16589	1334	46	4		4	TRAPPC9	8	141415595	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1809381	141415595	4948427	367	151985											
TOP1MT	116447	broad.mit.edu	37	chr8	144398310	144398310	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcggctgagaggcacggGctgtcagaggcagcacccac	14	14	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144398310	A	A	144398310	1	1	190	0	1	0	0	0	0	0	0	0	16488	1218	42	4		4	TOP1MT	8	144398310	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2982715	144398310	1965712	368	151986											
PLEC	5339	broad.mit.edu	37	chr8	144997456	144997456	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcggcctccgtggcctccGccttcagccgctgcagctcc	12	19	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144997456	A	A	144997456	3	1	190	1	0	0	0	0	1	0	0	0	12147	1087	38	4	7010	4	PLEC	8	144997456	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	599146	144997456	1366566	369	151987											
PTPRD	5789	broad.mit.edu	37	chr9	8713808	8713808	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccttcagcacaagccacgAttcaccaccaagaggcccaa	7	17	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8713808	C	C	8713808	1	2	190	0	1	0	0	0	0	0	0	0	12907	348	12	5		5	PTPRD	9	8713808	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08		8713808	132499623	370	151988											
BNC2	54796	broad.mit.edu	37	chr9	16419689	16419689	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtacgtggatggggggTggggaaaggtgagaaaaagg	24	1	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16419689	G	G	16419689	1	3	190	0	1	0	0	0	0	0	0	0	1481	1711	59	5		5	BNC2	9	16419689	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	7705881	16419689	124793742	371	151989											
C9orf82	79886	broad.mit.edu	37	chr9	26861082	26861082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgttttaattccaaacCttcaggttgcttattctctc	4	11	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26861082	A	A	26861082	3	1	190	1	0	0	0	0	1	0	0	0	2525	681	24	2	372	2	C9orf82	9	26861082	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	10441393	26861082	114352349	372	151990											
DDX58	23586	broad.mit.edu	37	chr9	32500900	32500900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagcctccattgggccCttgttgtttttctcagcctg	11	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32500900	A	A	32500900	3	1	190	1	0	0	0	0	1	0	0	0	4408	680	24	2	2701	2	DDX58	9	32500900	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5639818	32500900	108712531	373	151991											
NFX1	4799	broad.mit.edu	37	chr9	33338636	33338636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccattcatccaggtgctgGgcttctggaagcctgagcca	11	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33338636	T	T	33338636	1	4	190	0	1	0	0	0	0	0	0	0	10482	1247	43	2		2	NFX1	9	33338636	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	837736	33338636	107874795	374	151992											
AQP7	364	broad.mit.edu	37	chr9	33387140	33387140	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcccagaagccccaacctCagaggagggctcagagctca	11	15	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33387140	A	A	33387140	1	1	190	0	1	0	0	0	0	0	0	0	833	841	29	3		3	AQP7	9	33387140	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	48504	33387140	107826291	375	151993											
TLN1	7094	broad.mit.edu	37	chr9	35699425	35699425	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgaatgtcctgtcaactGctgcttcagttctgggcttg	10	10	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35699425	A	A	35699425	4	1	190	1	0	0	0	0	0	1	0	0	16070	1328	46	4	851	4	TLN1	9	35699425	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2312285	35699425	105514006	376	151994											
MELK	9833	broad.mit.edu	37	chr9	36607500	36607500	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaattctgtgattggatcAagagtcctaccattctgaaa	8	8	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36607500	T	T	36607500	1	4	190	0	1	0	0	0	0	0	0	0	9563	145	5	5		5	MELK	9	36607500	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	908075	36607500	104605931	377	151995											
FAM75A6	389730	broad.mit.edu	37	chr9	43626651	43626651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagcttttcatgtccctgGatagattttgtggggtctca	12	7	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43626651	T	T	43626651	3	4	190	1	0	0	0	0	1	0	0	0	5674	1174	41	3	1999	3	FAM75A6	9	43626651	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7019151	43626651	97586780	378	151996											
GDA	9615	broad.mit.edu	37	chr9	74856165	74856165	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaggtaaatgagaaaagCctcaccctcaaagaagtctt	7	8	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74856165	T	T	74856165	2	4	190	1	0	0	0	0	0	0	0	1	6369	738	26	4		4	GDA	9	74856165	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	31229514	74856165	66357266	379	151997											
GDA	9615	broad.mit.edu	37	chr9	74860278	74860278	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagaaaagaaaatagaaaccGaaactttttaatggaatgca	7	4	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74860278	A	A	74860278	1	1	190	0	1	0	0	0	0	0	0	0	6369	1073	37	4		4	GDA	9	74860278	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	4113	74860278	66353153	380	151998											
ROR2	4920	broad.mit.edu	37	chr9	94495762	94495763	+	Intron	DNP	CG	TC	TC													ttagcgggggacccaccttgCgcccttgacattcatccagt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	94495763	TC	TC	94495762	1	4	190	0	1	0	0	0	0	0	0	0	13638	783	27	4		4	ROR2	9	94495762	Intron	DNP	CG	TCGA-64-5779-01A-01D-1625-08	19635484	94495762	46717669	381	151999											
ZNF484	83744	broad.mit.edu	37	chr9	95609741	95609741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaggatttcccacagtcaCtgcattcatagggtttttct	7	9	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95609741	A	A	95609741	3	1	190	1	0	0	0	0	1	0	0	0	18064	565	20	3	1234	3	ZNF484	9	95609741	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1113979	95609741	45603690	382	152000											
NR4A3	8013	broad.mit.edu	37	chr9	102590739	102590739	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtacttcaagcagtccCcaccgtccacccccaccacg	5	21	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102590739	T	T	102590739	3	4	190	1	0	0	0	0	1	0	0	0	10729	623	22	4	454	4	NR4A3	9	102590739	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	6980998	102590739	38622692	383	152001											
ALDOB	229	broad.mit.edu	37	chr9	104189769	104189769	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggaaggcagagcacctgctGacagatgctggcgtagcgag	17	9	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104189769	T	T	104189769	3	4	190	1	0	0	0	0	1	0	0	0	508	1299	45	3	579	3	ALDOB	9	104189769	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1599030	104189769	37023662	384	152002											
GRIN3A	116443	broad.mit.edu	37	chr9	104341538	104341538	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgattcgtggtagcagcagCctgtatactatgtgctcacc	10	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104341538	G	G	104341538	3	3	190	1	0	0	0	0	1	0	0	0	6849	738	26	4	488	4	GRIN3A	9	104341538	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	151769	104341538	36871893	385	152003											
ASTN2	23245	broad.mit.edu	37	chr9	119770435	119770436	+	Missense_Mutation	DNP	CC	AA	AA													tgtccacagaggtccctcacCcatggggaggtggcattgat							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	119770436	AA	AA	119770435	3	1	190	1	0	0	0	0	1	0	0	0	1069	624	22	2	2792	2	ASTN2	9	119770435	Missense_Mutation	DNP	CC	TCGA-64-5779-01A-01D-1625-08	15428897	119770435	21442996	386	152004											
NR6A1	2649	broad.mit.edu	37	chr9	127302510	127302510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagatgggtgctcaggacaCttgctctttcttcaggactg	11	9	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127302510	A	A	127302510	1	1	190	0	1	0	0	0	0	0	0	0	10732	580	20	3		3	NR6A1	9	127302510	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	7532075	127302510	13910921	387	152005											
NAIF1	203245	broad.mit.edu	37	chr9	130829282	130829282	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtaccccggcgttgaagtgGttcaccagcaggtgcttctt	13	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130829282	C	C	130829282	3	2	190	1	0	0	0	0	1	0	0	0	10240	1252	44	4	892	4	NAIF1	9	130829282	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3526772	130829282	10384149	388	152006											
GOLGA2	2801	broad.mit.edu	37	chr9	131022332	131022332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgcccgcctcccagccCttcttggatggggcggggtt	15	14	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131022332	A	A	131022332	1	1	190	0	1	0	0	0	0	0	0	0	6616	696	24	2		2	GOLGA2	9	131022332	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	193050	131022332	10191099	389	152007											
SPTAN1	6709	broad.mit.edu	37	chr9	131346861	131346861	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggctgtgctattgtagcAtaaaggggatgcatgtcagg	14	5	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131346861	G	G	131346861	1	3	190	0	1	0	0	0	0	0	0	0	15235	232	8	5		5	SPTAN1	9	131346861	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	324529	131346861	9866570	390	152008											
CCBL1	883	broad.mit.edu	37	chr9	131599855	131599855	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctcattgtgtgtggcCctcccacacacaaacgaaga	9	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131599855	A	A	131599855	1	1	190	0	1	0	0	0	0	0	0	0	2758	638	22	2		2	CCBL1	9	131599855	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	252994	131599855	9613576	391	152009											
BAT2L1	84726	broad.mit.edu	37	chr9	134351319	134351319	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccctgacgcatttggtgGccggggctttgaggacagcc	14	12	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134351319	A	A	134351319	3	1	190	1	0	0	0	0	1	0	0	0	1325	1203	42	4	3861	4	BAT2L1	9	134351319	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2751464	134351319	6862112	392	152010											
MED27	9442	broad.mit.edu	37	chr9	134889620	134889620	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcaaaaaaaggaagggagGgagggaattttgaagaaaac	13	3	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134889620	A	A	134889620	1	1	190	0	1	0	0	0	0	0	0	0	9538	1247	43	4		4	MED27	9	134889620	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	538301	134889620	6323811	393	152011											
LCN6	158062	broad.mit.edu	37	chr9	139639594	139639594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacgcaccacacagctccCtacgtgggccccgcacagca	8	21	0	0	rs57981556		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139639594	A	A	139639594	1	1	190	0	1	0	0	0	0	0	0	0	8757	696	24	2		2	LCN6	9	139639594	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4749974	139639594	1573837	394	152012											
TRAF2	7186	broad.mit.edu	37	chr9	139815544	139815544	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acctggcgatggctgacttgGagcagaaggtcttggagatg	16	7	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139815544	C	C	139815544	3	2	190	1	0	0	0	0	1	0	0	0	16562	1175	41	4	1045	4	TRAF2	9	139815544	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	175950	139815544	1397887	395	152013											
CAMK1D	57118	broad.mit.edu	37	chr10	12833124	12833124	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtccgaggcatgtaaattGtcaggctgtgtcttttcttt	10	8	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12833124	C	C	12833124	1	2	190	0	1	0	0	0	0	0	0	0	2623	1392	48	4		4	CAMK1D	10	12833124	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08		12833124	122701623	396	152014											
PHYH	5264	broad.mit.edu	37	chr10	13325783	13325783	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatcaccaggtgcacCcgggccttgttttcctcgta	8	15	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13325783	A	A	13325783	2	1	190	1	0	0	0	0	0	0	0	1	11959	610	22	2		2	PHYH	10	13325783	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	492659	13325783	122208964	397	152015											
OLAH	55301	broad.mit.edu	37	chr10	15103770	15103770	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagcagagttgaagaacctCttgaaaatgacatctcccag	8	9	2	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15103770	A	A	15103770	3	1	190	1	0	0	0	0	1	0	0	0	10946	913	32	3	384	3	OLAH	10	15103770	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1777987	15103770	120430977	398	152016											
NMT2	9397	broad.mit.edu	37	chr10	15177483	15177483	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttaaacttgagcagacgCacgtgcatctgcctcagaga	10	10	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15177483	T	T	15177483	1	4	190	0	1	0	0	0	0	0	0	0	10599	725	25	4		4	NMT2	10	15177483	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	73713	15177483	120357264	399	152017											
ITGA8	8516	broad.mit.edu	37	chr10	15720606	15720606	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacaggctaggtatgttccTcaagattctttggttctttg	9	7	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15720606	C	C	15720606	1	2	190	0	1	0	0	0	0	0	0	0	7952	1566	54	5		5	ITGA8	10	15720606	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	543123	15720606	119814141	400	152018											
ITGA8	8516	broad.mit.edu	37	chr10	15726161	15726161	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacaaaaaaatacatttttGatgtaggtttctcatactac	5	6	1	2	rs7069224	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15726161	T	T	15726161	1	4	190	0	1	0	0	0	0	0	0	0	7952	1305	45	3		3	ITGA8	10	15726161	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	5555	15726161	119808586	401	152019											
PTPLA	9200	broad.mit.edu	37	chr10	17636083	17636083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtaaatatggagttaaaCcgaagttttaatgtatttgt	8	3	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17636083	A	A	17636083	1	1	190	0	1	0	0	0	0	0	0	0	12880	522	18	3		3	PTPLA	10	17636083	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1909922	17636083	117898664	402	152020											
ZEB1	6935	broad.mit.edu	37	chr10	31809063	31809063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgtttaggagagaagcCatatgaatgcccaaactgca	10	7	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31809063	A	A	31809063	3	1	190	1	0	0	0	0	1	0	0	0	17749	594	21	2	840	2	ZEB1	10	31809063	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	14172980	31809063	103725684	403	152021											
ANKRD30A	91074	broad.mit.edu	37	chr10	37481978	37481978	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atacaataaattatatatgtCccttttcttttagagtctcc	3	8	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37481978	A	A	37481978	1	1	190	0	1	0	0	0	0	0	0	0	658	870	30	3		3	ANKRD30A	10	37481978	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5672915	37481978	98052769	404	152022											
ARHGAP22	58504	broad.mit.edu	37	chr10	49791330	49791330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggatgtgagcagctgggCctacttccccttggcattga	13	11	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49791330	A	A	49791330	1	1	190	0	1	0	0	0	0	0	0	0	874	754	26	3		3	ARHGAP22	10	49791330	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	12309352	49791330	85743417	405	152023											
C10orf71	118461	broad.mit.edu	37	chr10	50531444	50531444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatggaatgcccaccaacCaaagctgctggagagaaagg	12	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50531444	A	A	50531444	3	1	190	1	0	0	0	0	1	0	0	0	1625	594	21	2	856	2	C10orf71	10	50531444	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	740114	50531444	85003303	406	152024											
PCDH15	65217	broad.mit.edu	37	chr10	55569344	55569344	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaattgaagtgtcagcttgGagatagctatggtatgacct	12	6	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55569344	C	C	55569344	1	2	190	0	1	0	0	0	0	0	0	0	11605	1189	41	4		4	PCDH15	10	55569344	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	5037900	55569344	79965403	407	152025											
CTNNA3	29119	broad.mit.edu	37	chr10	68139118	68139118	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatatggctttctgtaagTaaatgaatcaaattagtttt	7	3	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68139118	A	A	68139118	1	1	190	0	1	0	0	0	0	0	0	0	4048	1653	57	5		5	CTNNA3	10	68139118	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	12569774	68139118	67395629	408	152026											
AIFM2	84883	broad.mit.edu	37	chr10	71880924	71880924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaacttgcccgggaagggcCcagtgctgcccgtggccagg	15	13	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71880924	A	A	71880924	3	1	190	1	0	0	0	0	1	0	0	0	427	623	22	2	807	2	AIFM2	10	71880924	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3741806	71880924	63653823	409	152027											
LRIT1	26103	broad.mit.edu	37	chr10	86001051	86001051	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatggaggctgggctgcccGtcccacgcacccggtaccat	12	16	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86001051	T	T	86001051	1	4	190	0	1	0	0	0	0	0	0	0	9034	1160	40	3		3	LRIT1	10	86001051	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	14120127	86001051	49533696	410	152028											
RGR	5995	broad.mit.edu	37	chr10	86008012	86008012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccgatgcagtgtggagaGgataagaggcagggaggggc	19	6	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86008012	T	T	86008012	1	4	190	0	1	0	0	0	0	0	0	0	13400	1015	35	2		2	RGR	10	86008012	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	6961	86008012	49526735	411	152029											
PLCE1	51196	broad.mit.edu	37	chr10	95994067	95994067	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcccaagaagaaactttaGaggtaaggcctttcagaatc	8	8	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95994067	T	T	95994067	4	4	190	1	0	0	0	0	0	1	0	0	12129	943	33	3	2516	3	PLCE1	10	95994067	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	9986055	95994067	39540680	412	152030											
RRP12	23223	broad.mit.edu	37	chr10	99126615	99126615	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctcagctttccggatgttGaccaggactctgtggtactc	11	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99126615	C	C	99126615	2	2	190	1	0	0	0	0	0	0	0	1	13797	1277	45	4		4	RRP12	10	99126615	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	3132548	99126615	36408132	413	152031											
HPSE2	60495	broad.mit.edu	37	chr10	100242380	100242380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctcccgagctattttcaGgttggcacgtacttggactt	10	10	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100242380	T	T	100242380	1	4	190	0	1	0	0	0	0	0	0	0	7412	1015	35	2		2	HPSE2	10	100242380	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1115765	100242380	35292367	414	152032											
CPN1	1369	broad.mit.edu	37	chr10	101841283	101841283	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttgcaccttgtacagcgTccgcacaagatcatcatagc	8	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101841283	A	A	101841283	3	1	190	1	0	0	0	0	1	0	0	0	3841	1667	58	5	1312	5	CPN1	10	101841283	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	1598903	101841283	33693464	415	152033											
SORCS3	22986	broad.mit.edu	37	chr10	106971025	106971025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtaagtaaaacacctaCaggaactcagctccctgttt	8	11	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106971025	A	A	106971025	1	1	190	0	1	0	0	0	0	0	0	0	15046	493	17	3		3	SORCS3	10	106971025	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5129742	106971025	28563722	416	152034											
SMC3	9126	broad.mit.edu	37	chr10	112356221	112356221	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacaaggaagtctcgacttGaattgcaaaaagatgttaga	9	6	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112356221	A	A	112356221	3	1	190	1	0	0	0	0	1	0	0	0	14898	1291	45	4	2103	4	SMC3	10	112356221	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	5385196	112356221	23178526	417	152035											
HABP2	3026	broad.mit.edu	37	chr10	115345760	115345760	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatgtttcactaggcagagGacccttagagccctgggctg	14	10	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115345760	T	T	115345760	1	4	190	0	1	0	0	0	0	0	0	0	7004	1189	41	3		3	HABP2	10	115345760	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2989539	115345760	20188987	418	152036											
AFAP1L2	84632	broad.mit.edu	37	chr10	116064523	116064523	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggaggatgcggaaggaGtagaggtggtcggggctggg	23	3	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116064523	C	C	116064523	4	2	190	1	0	0	0	0	0	1	0	0	355	1024	36	4	1253	4	AFAP1L2	10	116064523	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	718763	116064523	19470224	419	152037											
TIAL1	7073	broad.mit.edu	37	chr10	121335210	121335210	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacttgccataccatatccGgcttggttaggaggaggtat	11	8	0	0	rs139964504	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121335210	A	A	121335210	2	1	190	1	0	0	0	0	0	0	0	1	16012	1103	39	4		4	TIAL1	10	121335210	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	5270687	121335210	14199537	420	152038											
EBF3	253738	broad.mit.edu	37	chr10	131755503	131755503	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcggttttgttttgaaaaAtaaagaagtcatccttacct	7	7	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131755503	G	G	131755503	1	3	190	0	1	0	0	0	0	0	0	0	4922	116	4	5		5	EBF3	10	131755503	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	10420293	131755503	3779244	421	152039											
AP2A2	161	broad.mit.edu	37	chr11	988579	988579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacgtgagcgtgcggcagCgggccgtggacctcctctac	17	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	988579	T	T	988579	3	4	190	1	0	0	0	0	1	0	0	0	742	759	27	4	1197	4	AP2A2	11	988579	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08		988579	134017937	422	152040											
AP2A2	161	broad.mit.edu	37	chr11	988746	988746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgtgaatctcagcggcaGgatttccttcgtgctctgcg	13	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	988746	T	T	988746	1	4	190	0	1	0	0	0	0	0	0	0	742	1015	35	2		2	AP2A2	11	988746	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	167	988746	134017770	423	152041											
TNNI2	7136	broad.mit.edu	37	chr11	1860845	1860845	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctcaccacctacctgatGggcacaggcatcacggtggc	10	17	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1860845	A	A	1860845	1	1	190	0	1	0	0	0	0	0	0	0	16450	1363	47	4		4	TNNI2	11	1860845	5'Flank	SNP	G	TCGA-64-5779-01A-01D-1625-08	872099	1860845	133145671	424	152042											
HBB	3043	broad.mit.edu	37	chr11	5246887	5246887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccactttctgataggcagCctgcactggtggggtgaatt	12	10	1	2	rs34502690		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5246887	A	A	5246887	3	1	190	1	0	0	0	0	1	0	0	0	7044	739	26	3	62	3	HBB	11	5246887	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3386042	5246887	129759629	425	152043											
UBQLN3	50613	broad.mit.edu	37	chr11	5530858	5530858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattggagaccaagatcatcCtttcaggcaatggcaaaagt	10	8	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5530858	A	A	5530858	1	1	190	0	1	0	0	0	0	0	0	0	17024	696	24	2		2	UBQLN3	11	5530858	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	283971	5530858	129475658	426	152044											
ZNF215	7762	broad.mit.edu	37	chr11	6977862	6977862	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaatataatgtaagaaaAcatttgtcagatttttcttt	5	4	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6977862	G	G	6977862	1	3	190	0	1	0	0	0	0	0	0	0	17897	58	2	5		5	ZNF215	11	6977862	3'UTR	SNP	A	TCGA-64-5779-01A-01D-1625-08	1447004	6977862	128028654	427	152045											
TMEM41B	440026	broad.mit.edu	37	chr11	9332874	9332874	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaatgcttgctatgcttGtgcatctttttatgagcttt	10	6	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9332874	A	A	9332874	1	1	190	0	1	0	0	0	0	0	0	0	16288	1392	48	4		4	TMEM41B	11	9332874	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2355012	9332874	125673642	428	152046											
GALNTL4	374378	broad.mit.edu	37	chr11	11642800	11642800	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accacgcatctgcggccccaGagccccgccgtggctgagtt	12	17	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11642800	A	A	11642800	1	1	190	0	1	0	0	0	0	0	0	0	6285	957	33	4		4	GALNTL4	11	11642800	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2309926	11642800	123363716	429	152047											
PDE3B	5140	broad.mit.edu	37	chr11	14856585	14856585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttggtatctgacaacacGgccagttcctggcttacagc	10	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14856585	T	T	14856585	3	4	190	1	0	0	0	0	1	0	0	0	11732	1116	39	1	2306	1	PDE3B	11	14856585	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3213785	14856585	120149931	430	152048											
CALCA	796	broad.mit.edu	37	chr11	14990285	14990285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagagaggaaccaaacCacatgcatcaagttatagga	8	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14990285	A	A	14990285	1	1	190	0	1	0	0	0	0	0	0	0	2601	609	21	2		2	CALCA	11	14990285	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	133700	14990285	120016231	431	152049											
SOX6	55553	broad.mit.edu	37	chr11	16506036	16506036	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accacctgctccctgagcttCtcctgaatggccacctccac	6	19	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16506036	A	A	16506036	1	1	190	0	1	0	0	0	0	0	0	0	15069	928	32	3		3	SOX6	11	16506036	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1515751	16506036	118500480	432	152050											
KCNJ11	3767	broad.mit.edu	37	chr11	17409336	17409336	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcagtgccctcgctgggGgccaggtcaccgtgggcgaa	16	13	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17409336	A	A	17409336	2	1	190	1	0	0	0	0	0	0	0	1	8115	1219	43	4		4	KCNJ11	11	17409336	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	903300	17409336	117597180	433	152051											
ABCC8	6833	broad.mit.edu	37	chr11	17449829	17449829	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccaggcatggggcagcagGactcacctggacacagcagt	15	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17449829	A	A	17449829	1	1	190	0	1	0	0	0	0	0	0	0	58	1189	41	4		4	ABCC8	11	17449829	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	40493	17449829	117556687	434	152052											
TPH1	7166	broad.mit.edu	37	chr11	18047088	18047089	+	Intron	DNP	CC	AA	AA													agatactcatacaccctaccCcaggtgaaaatatagctaat							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18047089	AA	AA	18047088	1	1	190	0	1	0	0	0	0	0	0	0	16525	638	22	2		2	TPH1	11	18047088	Intron	DNP	CC	TCGA-64-5779-01A-01D-1625-08	597259	18047088	116959428	435	152053											
SAAL1	113174	broad.mit.edu	37	chr11	18103004	18103004	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaatgcagaggaacacTtctgtttgctcaactggcct	9	9	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18103004	A	A	18103004	3	1	190	1	0	0	0	0	1	0	0	0	13912	1609	56	5	146	5	SAAL1	11	18103004	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	55916	18103004	116903512	436	152054											
SPTY2D1	144108	broad.mit.edu	37	chr11	18655966	18655966	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctatgccgtctgcccgcCcccttccctccacggcctat	6	21	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18655966	A	A	18655966	1	1	190	0	1	0	0	0	0	0	0	0	15244	638	22	2		2	SPTY2D1	11	18655966	5'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	552962	18655966	116350550	437	152055											
NAV2	89797	broad.mit.edu	37	chr11	19955296	19955296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggataaggagaaaagcaaGgaccttgccaagagagcctc	12	8	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19955296	T	T	19955296	3	4	190	1	0	0	0	0	1	0	0	0	10278	991	35	2	1611	2	NAV2	11	19955296	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1299330	19955296	115051220	438	152056											
NAV2	89797	broad.mit.edu	37	chr11	20066491	20066491	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctcttggcttgcaggctAatcttgctgatctctctctt	9	11	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20066491	T	T	20066491	1	4	190	0	1	0	0	0	0	0	0	0	10278	377	13	5		5	NAV2	11	20066491	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	111195	20066491	114940025	439	152057											
NAV2	89797	broad.mit.edu	37	chr11	20067038	20067038	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacagccctaggcagctctCtaccaggtctggtcaaccaa	8	14	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20067038	G	G	20067038	3	3	190	1	0	0	0	0	1	0	0	0	10278	912	32	4	3887	4	NAV2	11	20067038	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	547	20067038	114939478	440	152058											
NELL1	4745	broad.mit.edu	37	chr11	21191533	21191533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagggacagtgcaatgcgGgctcctcaggcttttgagca	14	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21191533	T	T	21191533	1	4	190	0	1	0	0	0	0	0	0	0	10428	1247	43	2		2	NELL1	11	21191533	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1124495	21191533	113814983	441	152059											
WT1	7490	broad.mit.edu	37	chr11	32418005	32418005	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaagccacatgtgaacattCacgtaggtcttgagggagag	12	7	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32418005	G	G	32418005	1	3	190	0	1	0	0	0	0	0	0	0	17535	841	29	4		4	WT1	11	32418005	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	11226472	32418005	102588511	442	152060											
LMO2	4005	broad.mit.edu	37	chr11	33886446	33886447	+	Intron	DNP	GG	TT	TT													agatcgttttgggccagacaGggcatctcacctgactgcct							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	33886447	TT	TT	33886446	1	4	190	0	1	0	0	0	0	0	0	0	8926	1015	35	2		2	LMO2	11	33886446	Intron	DNP	GG	TCGA-64-5779-01A-01D-1625-08	1468441	33886446	101120070	443	152061											
LDLRAD3	143458	broad.mit.edu	37	chr11	36248704	36248704	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaccccagcatcacctatgCcatcatcggcagctccgtca	6	17	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36248704	T	T	36248704	3	4	190	1	0	0	0	0	1	0	0	0	8779	739	26	4	542	4	LDLRAD3	11	36248704	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2362258	36248704	98757812	444	152062											
LRRC4C	57689	broad.mit.edu	37	chr11	40137021	40137021	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgttagattattgtgtgcCaggttgatctccactagtga	10	6	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40137021	A	A	40137021	2	1	190	1	0	0	0	0	0	0	0	1	9095	581	21	2		2	LRRC4C	11	40137021	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	3888317	40137021	94869495	445	152063											
ARHGAP1	392	broad.mit.edu	37	chr11	46702216	46702216	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgagactccaaactgctgGttgggcagggggggccgtgg	19	9	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46702216	T	T	46702216	3	4	190	1	0	0	0	0	1	0	0	0	863	1252	44	3	626	3	ARHGAP1	11	46702216	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	6565195	46702216	88304300	446	152064											
ZNF408	79797	broad.mit.edu	37	chr11	46727238	46727238	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaactgctggacacacacaGagaggaggaagtctcccccg	11	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46727238	T	T	46727238	3	4	190	1	0	0	0	0	1	0	0	0	18015	942	33	3	2038	3	ZNF408	11	46727238	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	25022	46727238	88279278	447	152065											
SPRYD5	84767	broad.mit.edu	37	chr11	55648310	55648310	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtattggatgtgaccgtcCaaatccgccccatatcactg	9	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55648310	A	A	55648310	1	1	190	0	1	0	0	0	0	0	0	0	15229	609	21	2		2	SPRYD5	11	55648310	5'Flank	SNP	C	TCGA-64-5779-01A-01D-1625-08	8921072	55648310	79358206	448	152066											
OR8I2	120586	broad.mit.edu	37	chr11	55860845	55860845	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctggatttgcaaatcaccCtgaattacaagtcagtcttt	6	10	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55860845	G	G	55860845	3	3	190	1	0	0	0	0	1	0	0	0	11334	681	24	4	64	4	OR8I2	11	55860845	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	212535	55860845	79145671	449	152067											
OR5J2	282775	broad.mit.edu	37	chr11	55944979	55944979	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tacacagtttgagaaacaagGacgtaaaggaggcagtgaaa	12	5	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55944979	C	C	55944979	3	2	190	1	0	0	0	0	1	0	0	0	11259	1174	41	4	888	4	OR5J2	11	55944979	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	84134	55944979	79061537	450	152068											
OR9G4	283189	broad.mit.edu	37	chr11	56510579	56510579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattctcaggatagccaggaGgatgttgacataggaaatca	12	6	2	1	rs142738268	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56510579	A	A	56510579	3	1	190	1	0	0	0	0	1	0	0	0	11345	1000	35	4	277	4	OR9G4	11	56510579	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	565600	56510579	78495937	451	152069											
FAM111B	374393	broad.mit.edu	37	chr11	58877060	58877060	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccttgtttctccatcttatCgagtagtagaagttagttac	7	8	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58877060	T	T	58877060	1	4	190	0	1	0	0	0	0	0	0	0	5446	899	31	4		4	FAM111B	11	58877060	5'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	2366481	58877060	76129456	452	152070											
MS4A14	84689	broad.mit.edu	37	chr11	60182961	60182961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatagtgaacaacctgccCcagaagaaaatgatcaatta	6	8	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60182961	A	A	60182961	3	1	190	1	0	0	0	0	1	0	0	0	9952	623	22	2	538	2	MS4A14	11	60182961	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1305901	60182961	74823555	453	152071											
EML3	256364	broad.mit.edu	37	chr11	62378224	62378224	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagcaggcgccccagaagTgtttgtttctttattcctgt	9	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62378224	A	A	62378224	1	1	190	0	1	0	0	0	0	0	0	0	5140	1711	59	5		5	EML3	11	62378224	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	2195263	62378224	72628292	454	152072											
ATG2A	23130	broad.mit.edu	37	chr11	64662491	64662491	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgagggcgtggtccttgTgggcgtcggggacaatctgg	18	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64662491	C	C	64662491	3	2	190	1	0	0	0	0	1	0	0	0	1097	1696	59	5	49	5	ATG2A	11	64662491	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	2284267	64662491	70344025	455	152073											
PC	5091	broad.mit.edu	37	chr11	66619834	66619834	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgtctctagcttgtccccAgtggcctaagcctgtgggac	12	13	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66619834	T	T	66619834	1	4	190	0	1	0	0	0	0	0	0	0	11591	203	7	5		5	PC	11	66619834	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1957343	66619834	68386682	456	152074											
CARNS1	57571	broad.mit.edu	37	chr11	67191318	67191318	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccatgagcacttttcccGgattacccgagacttgcagg	11	12	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67191318	A	A	67191318	3	1	190	1	0	0	0	0	1	0	0	0	2682	1116	39	4	2133	4	CARNS1	11	67191318	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	571484	67191318	67815198	457	152075											
ACY3	91703	broad.mit.edu	37	chr11	67410162	67410163	+	3'UTR	DNP	GG	TT	TT													tcaggacccatcgttcagatGggaagactgaggttggggag							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	67410163	TT	TT	67410162	1	4	190	0	1	0	0	0	0	0	0	0	227	1363	47	2		2	ACY3	11	67410162	3'UTR	DNP	GG	TCGA-64-5779-01A-01D-1625-08	218844	67410162	67596354	458	152076											
MTL5	9633	broad.mit.edu	37	chr11	68480780	68480780	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggcagcctgacctcctGcagttgcaccctttgttgtg	10	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68480780	T	T	68480780	4	4	190	1	0	0	0	0	0	1	0	0	10030	1311	46	3	422	3	MTL5	11	68480780	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1070618	68480780	66525736	459	152077											
ARAP1	116985	broad.mit.edu	37	chr11	72421536	72421536	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcggtcaggctgctctgagCctggaactcccagcagataa	12	13	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72421536	A	A	72421536	3	1	190	1	0	0	0	0	1	0	0	0	840	739	26	3	3146	3	ARAP1	11	72421536	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3940756	72421536	62584980	460	152078											
RAB6A	5870	broad.mit.edu	37	chr11	73441889	73441889	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgaaatgaaacgaaaaaaaGatttgctcagtgaacacatt	7	6	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73441889	C	C	73441889	1	2	190	0	1	0	0	0	0	0	0	0	13059	957	33	4		4	RAB6A	11	73441889	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1020353	73441889	61564627	461	152079											
KLHL35	283212	broad.mit.edu	37	chr11	75136592	75136592	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgctccacgctgtgcaggCgcctcaggccgtcgaagcca	13	16	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75136592	T	T	75136592	3	4	190	1	0	0	0	0	1	0	0	0	8459	768	27	4	543	4	KLHL35	11	75136592	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1694703	75136592	59869924	462	152080											
MYO7A	4647	broad.mit.edu	37	chr11	76919628	76919628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgggctcggggctgtgCcgtgaggcccacctaggcgg	19	11	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76919628	A	A	76919628	1	1	190	0	1	0	0	0	0	0	0	0	10176	754	26	3		3	MYO7A	11	76919628	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1783036	76919628	58086888	463	152081											
NARS2	79731	broad.mit.edu	37	chr11	78204204	78204204	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctctgagaattttcagctcGgaaggtcggaccaaaggtaa	12	8	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78204204	C	C	78204204	3	2	190	1	0	0	0	0	1	0	0	0	10265	1124	39	4	738	4	NARS2	11	78204204	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1284576	78204204	56802312	464	152082											
DLG2	1740	broad.mit.edu	37	chr11	83344258	83344258	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactcctttgcctacctgaCgtagagggagcgtttctgat	10	10	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83344258	T	T	83344258	3	4	190	1	0	0	0	0	1	0	0	0	4595	536	19	4	1081	4	DLG2	11	83344258	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5140054	83344258	51662258	465	152083											
DLG2	1740	broad.mit.edu	37	chr11	83641287	83641287	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgtttagtgcaagagaaGtgagcagaggcggattctac	14	5	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83641287	A	A	83641287	1	1	190	0	1	0	0	0	0	0	0	0	4595	1044	36	4		4	DLG2	11	83641287	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	297029	83641287	51365229	466	152084											
TYR	7299	broad.mit.edu	37	chr11	88911788	88911788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggtgggaacaagaaatcCagaagctgacaggagatgaa	14	6	0	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88911788	A	A	88911788	3	1	190	1	0	0	0	0	1	0	0	0	16939	595	21	2	669	2	TYR	11	88911788	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5270501	88911788	46094728	467	152085											
MMP12	4321	broad.mit.edu	37	chr11	102745501	102745501	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaaacaaacaaacaaactgGttaatgcaattaaatcttaa	3	7	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102745501	C	C	102745501	1	2	190	0	1	0	0	0	0	0	0	0	9744	1276	44	4		4	MMP12	11	102745501	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	13833713	102745501	32261015	468	152086											
GUCY1A2	2977	broad.mit.edu	37	chr11	106697189	106697189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgatgaaagattcatttGgtttaagattaggttttcaa	8	2	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106697189	T	T	106697189	1	4	190	0	1	0	0	0	0	0	0	0	6958	1363	47	2		2	GUCY1A2	11	106697189	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	3951688	106697189	28309327	469	152087											
CWF19L2	143884	broad.mit.edu	37	chr11	107274913	107274913	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtaagcaaggtatgtgggGgaattatgatagaccttcat	12	5	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107274913	A	A	107274913	1	1	190	0	1	0	0	0	0	0	0	0	4105	1247	43	4		4	CWF19L2	11	107274913	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	577724	107274913	27731603	470	152088											
CWF19L2	143884	broad.mit.edu	37	chr11	107288834	107288834	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	attttcacagtgtgctatatCcacactgctaaggaacttct	6	10	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107288834	G	G	107288834	1	3	190	0	1	0	0	0	0	0	0	0	4105	870	30	4		4	CWF19L2	11	107288834	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	13921	107288834	27717682	471	152089											
ALG9	79796	broad.mit.edu	37	chr11	111657158	111657158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgatttgctttgctttcCggggtttgaggatggtgtag	14	6	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111657158	A	A	111657158	3	1	190	1	0	0	0	0	1	0	0	0	524	652	23	1	40	1	ALG9	11	111657158	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4368324	111657158	23349358	472	152090											
DSCAML1	57453	broad.mit.edu	37	chr11	117647604	117647604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagacggccacgttgccaCgcattgacctttgatcctcc	9	14	0	4	rs148829010		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117647604	A	A	117647604	3	1	190	1	0	0	0	0	1	0	0	0	4809	536	19	3	5872	3	DSCAML1	11	117647604	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5990446	117647604	17358912	473	152091											
RPS25	6230	broad.mit.edu	37	chr11	118889011	118889011	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattgcgaagctcggagaaTagcagcagacaccgcagcct	11	13	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118889011	A	A	118889011	1	1	190	0	1	0	0	0	0	0	0	0	13747	1421	49	5		5	RPS25	11	118889011	5'UTR	SNP	T	TCGA-64-5779-01A-01D-1625-08	1241407	118889011	16117505	474	152092											
TMEM225	338661	broad.mit.edu	37	chr11	123755300	123755300	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttaaggaggaaggaaagGccaaggctcgacgtcatcat	13	7	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123755300	T	T	123755300	2	4	190	1	0	0	0	0	0	0	0	1	16270	1190	42	3		3	TMEM225	11	123755300	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	4866289	123755300	11251216	475	152093											
OR10G7	390265	broad.mit.edu	37	chr11	123909454	123909454	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagatagtcctgccgcttggGgacaccaaggtcatcagcat	12	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123909454	C	C	123909454	2	2	190	1	0	0	0	0	0	0	0	1	10996	1219	43	4		4	OR10G7	11	123909454	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	154154	123909454	11097062	476	152094											
ROBO3	64221	broad.mit.edu	37	chr11	124740590	124740590	+	Frame_Shift_Del	DEL	C	-	-													gtggcggagaacagtgtgggCcgcgctgaagcatctggctc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124740590	-	-	124740590	7	5	190	1	0	1	0	1	0	0	0	0	13626	726	26	0	1021	0	ROBO3	11	124740590	Frame_Shift_Del	DEL	C	TCGA-64-5779-01A-01D-1625-08	831136	124740590	10265926	477	152095											
FEZ1	9638	broad.mit.edu	37	chr11	125325762	125325762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtttcccttctctatcCggctgctctgcaggctcagc	9	15	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125325762	A	A	125325762	3	1	190	1	0	0	0	0	1	0	0	0	5880	652	23	1	290	1	FEZ1	11	125325762	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	585172	125325762	9680754	478	152096											
BARX2	8538	broad.mit.edu	37	chr11	129246011	129246011	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgctacaagactttcatgatCgacgagatcctctccaagga	8	12	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129246011	T	T	129246011	2	4	190	1	0	0	0	0	0	0	0	1	1321	874	31	4		4	BARX2	11	129246011	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	3920249	129246011	5760505	479	152097											
SLC6A12	6539	broad.mit.edu	37	chr12	302382	302382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgtcagccgtcctttcCctcatctctggagtcttctg	8	14	5	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	302382	A	A	302382	1	1	190	0	1	0	0	0	0	0	0	0	14789	638	22	2		2	SLC6A12	12	302382	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08		302382	133549513	480	152098											
TSPAN9	10867	broad.mit.edu	37	chr12	3321069	3321070	+	Intron	INS	-	T	T													gagagggatgaaggagatccINStttgcgagaggcatgttctc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3321070	T	T	3321069	6	5	190	0	1	1	1	0	0	0	0	0	16779	696	24	0		0	TSPAN9	12	3321069	Intron	INS	-	TCGA-64-5779-01A-01D-1625-08	3018687	3321069	130530826	481	152099											
DYRK4	8798	broad.mit.edu	37	chr12	4711815	4711816	+	Intron	DNP	GG	TT	TT													acacaggagttggaagatctGggtaacacctgctgagggtc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	4711816	TT	TT	4711815	1	4	190	0	1	0	0	0	0	0	0	0	4898	1363	47	2		2	DYRK4	12	4711815	Intron	DNP	GG	TCGA-64-5779-01A-01D-1625-08	1390746	4711815	129140080	482	152100											
VWF	7450	broad.mit.edu	37	chr12	6131129	6131129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcctgaggcaaaacgcCggccagccacctcacacact	7	17	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6131129	A	A	6131129	3	1	190	1	0	0	0	0	1	0	0	0	17373	652	23	1	4934	1	VWF	12	6131129	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1419314	6131129	127720766	483	152101											
LAG3	3902	broad.mit.edu	37	chr12	6886897	6886897	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcatctgtaaagtctgagaGaatgacaaagtgtcctttct	9	7	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6886897	A	A	6886897	1	1	190	0	1	0	0	0	0	0	0	0	8672	957	33	4		4	LAG3	12	6886897	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	755768	6886897	126964998	484	152102											
CD163	9332	broad.mit.edu	37	chr12	7656240	7656240	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaataaatgagaagcttttaCcagcagatccagagtcttca	8	8	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7656240	G	G	7656240	1	3	190	0	1	0	0	0	0	0	0	0	2997	521	18	4		4	CD163	12	7656240	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	769343	7656240	126195655	485	152103											
CLEC4C	170482	broad.mit.edu	37	chr12	7883347	7883347	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatggaacaccctaaaccCctacatgatcaggacccagt	7	14	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7883347	A	A	7883347	1	1	190	0	1	0	0	0	0	0	0	0	3545	638	22	2		2	CLEC4C	12	7883347	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	227107	7883347	125968548	486	152104											
C3AR1	719	broad.mit.edu	37	chr12	8212211	8212211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagagacctgttttctagtgGatctccataaaagtctggat	9	7	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8212211	T	T	8212211	3	4	190	1	0	0	0	0	1	0	0	0	2227	1174	41	3	881	3	C3AR1	12	8212211	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	328864	8212211	125639684	487	152105											
PZP	5858	broad.mit.edu	37	chr12	9303276	9303276	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atagactttaacaattgctgGcttcaagtctcctactggga	8	9	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9303276	C	C	9303276	3	2	190	1	0	0	0	0	1	0	0	0	12977	1203	42	4	112	4	PZP	12	9303276	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1091065	9303276	124548619	488	152106											
PRB4	5545	broad.mit.edu	37	chr12	11117981	11117981	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacaaaaagatagaataaatGaaggcctaacagcactggct	9	7	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11117981	A	A	11117981	1	1	190	0	1	0	0	0	0	0	0	0	12551	1305	45	4		4	PRB4	12	11117981	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1814705	11117981	122733914	489	152107											
ERP27	121506	broad.mit.edu	37	chr12	15091331	15091331	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcacactatagccacccaActacatttttcttttacctg	2	13	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15091331	T	T	15091331	1	4	190	0	1	0	0	0	0	0	0	0	5283	58	2	5		5	ERP27	12	15091331	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	3973350	15091331	118760564	490	152108											
PLCZ1	89869	broad.mit.edu	37	chr12	18892214	18892214	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcacttagccaatgcaaaTttaaatgggaaaagtgtagc	8	7	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18892214	C	C	18892214	1	2	190	0	1	0	0	0	0	0	0	0	12139	1508	52	5		5	PLCZ1	12	18892214	5'Flank	SNP	T	TCGA-64-5779-01A-01D-1625-08	3800883	18892214	114959681	491	152109											
SLCO1A2	6579	broad.mit.edu	37	chr12	21446879	21446879	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaaataggatgtcttacCatgtttattcccgttccaat	6	9	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21446879	A	A	21446879	3	1	190	1	0	0	0	0	1	0	0	0	14836	608	21	2	595	2	SLCO1A2	12	21446879	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2554665	21446879	112405016	492	152110											
SLCO1A2	6579	broad.mit.edu	37	chr12	21450278	21450278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaggagtttgctacacccGccatcacactgttcgtgggg	11	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21450278	A	A	21450278	1	1	190	0	1	0	0	0	0	0	0	0	14836	1102	38	4		4	SLCO1A2	12	21450278	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	3399	21450278	112401617	493	152111											
IAPP	3375	broad.mit.edu	37	chr12	21531425	21531425	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtataatttaacagtgCccttttcatctccagtgtga	6	10	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21531425	A	A	21531425	1	1	190	0	1	0	0	0	0	0	0	0	7542	754	26	3		3	IAPP	12	21531425	3'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	81147	21531425	112320470	494	152112											
ST8SIA1	6489	broad.mit.edu	37	chr12	22487122	22487122	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacgccagtacagccatGgcccctctggacgtttgtcg	10	15	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22487122	T	T	22487122	2	4	190	1	0	0	0	0	0	0	0	1	15349	1335	47	2		2	ST8SIA1	12	22487122	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	955697	22487122	111364773	495	152113											
FAR2	55711	broad.mit.edu	37	chr12	29450055	29450055	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acatatctctactgcctattCaaattgtaacctgaagcaca	4	11	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29450055	G	G	29450055	4	3	190	1	0	0	0	0	0	1	0	0	5732	838	29	4	477	4	FAR2	12	29450055	Nonsense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	6962933	29450055	104401840	496	152114											
TMTC1	83857	broad.mit.edu	37	chr12	29786214	29786214	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagtcatagcacagggtcaCgggtgcaagcagaagccaca	12	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29786214	G	G	29786214	3	3	190	1	0	0	0	0	1	0	0	0	16383	536	19	4	1706	4	TMTC1	12	29786214	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	336159	29786214	104065681	497	152115											
DENND5B	160518	broad.mit.edu	37	chr12	31632903	31632903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taatatcataggagttgtatCgctggagtttcaaaagggaa	11	4	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31632903	A	A	31632903	3	1	190	1	0	0	0	0	1	0	0	0	4477	884	31	3	3376	3	DENND5B	12	31632903	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1846689	31632903	102218992	498	152116											
KIF21A	55605	broad.mit.edu	37	chr12	39760732	39760732	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattagaaaaaggaatgaCtaaatgaactgaatttggct	9	3	0	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39760732	A	A	39760732	1	1	190	0	1	0	0	0	0	0	0	0	8358	580	20	3		3	KIF21A	12	39760732	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	8127829	39760732	94091163	499	152117											
ABCD2	225	broad.mit.edu	37	chr12	39998605	39998605	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggtaattctaccttaGctccattcttgctatggctt	8	9	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39998605	T	T	39998605	3	4	190	1	0	0	0	0	1	0	0	0	61	971	34	3	886	3	ABCD2	12	39998605	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	237873	39998605	93853290	500	152118											
C12orf40	283461	broad.mit.edu	37	chr12	40044037	40044037	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcttcaaatttttttttTcagcgcagtactgttaactg	6	7	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40044037	G	G	40044037	1	3	190	0	1	0	0	0	0	0	0	0	1699	1798	62	5		5	C12orf40	12	40044037	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	45432	40044037	93807858	501	152119											
SLC38A2	54407	broad.mit.edu	37	chr12	46756848	46756848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtcacagccattaacaCagccagacggacaatgagaa	10	11	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46756848	A	A	46756848	3	1	190	1	0	0	0	0	1	0	0	0	14718	478	17	3	401	3	SLC38A2	12	46756848	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	6712811	46756848	87095047	502	152120											
TUBA1A	7846	broad.mit.edu	37	chr12	49582593	49582593	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggttcctgcacccgcactgCggcggcggcggggcttgagg	18	14	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49582593	A	A	49582593	1	1	190	0	1	0	0	0	0	0	0	0	16869	783	27	3		3	TUBA1A	12	49582593	5'Flank	SNP	C	TCGA-64-5779-01A-01D-1625-08	2825745	49582593	84269302	503	152121											
KRT86	3892	broad.mit.edu	37	chr12	52695778	52695778	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccggcccggccgctgctgCatcaccgccgccccctaccg	10	24	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52695778	A	A	52695778	4	1	190	1	0	0	0	0	0	1	0	0	8571	718	25	3	80	3	KRT86	12	52695778	Nonsense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3113185	52695778	81156117	504	152122											
KRT6A	3853	broad.mit.edu	37	chr12	52884697	52884697	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagagtgtctgccttgGcttgcagttcaaccttgttc	11	10	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52884697	C	C	52884697	3	2	190	1	0	0	0	0	1	0	0	0	8551	1203	42	4	861	4	KRT6A	12	52884697	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	188919	52884697	80967198	505	152123											
KRT74	121391	broad.mit.edu	37	chr12	52963551	52963551	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacccctaagcccagcaggGgatatttgcttgttcccaaa	10	12	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52963551	A	A	52963551	1	1	190	0	1	0	0	0	0	0	0	0	8558	1247	43	4		4	KRT74	12	52963551	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	78854	52963551	80888344	506	152124											
KRT2	3849	broad.mit.edu	37	chr12	53039308	53039308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggaacaggaccacaccCcattacttacacacagtcac	5	16	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53039308	A	A	53039308	1	1	190	0	1	0	0	0	0	0	0	0	8528	638	22	2		2	KRT2	12	53039308	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	75757	53039308	80812587	507	152125											
MAP3K12	7786	broad.mit.edu	37	chr12	53876172	53876172	+	Intron	DEL	G	-	-													ttctgcaggagagatggggtGgggggggtctgattagaagt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53876172	-	-	53876172	6	5	190	0	1	1	0	1	0	0	0	0	9338	1363	47	0		0	MAP3K12	12	53876172	Intron	DEL	G	TCGA-64-5779-01A-01D-1625-08	836864	53876172	79975723	508	152126	652	2									
MAP3K12	7786	broad.mit.edu	37	chr12	53876179	53876179	+	Intron	SNP	G	T	T													ggagagatggggtgggggggGtctgattagaagtggaaaga					rs149342418	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53876179	T	T	53876179	1	4	190	0	1	0	0	0	0	0	0	0	9338	1276	44	3		3	MAP3K12	12	53876179	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	7	53876179	79975716	509	152127	652	2									
HOXC10	3226	broad.mit.edu	37	chr12	54379688	54379688	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagccccaatgaaatcaaGacggagcagagcctggcggg	13	13	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54379688	T	T	54379688	3	4	190	1	0	0	0	0	1	0	0	0	7376	933	33	3	647	3	HOXC10	12	54379688	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	503509	54379688	79472207	510	152128											
LACRT	90070	broad.mit.edu	37	chr12	55025703	55025703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcattgccccacctgcaccCgccccccacccccactccac	4	26	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55025703	T	T	55025703	1	4	190	0	1	0	0	0	0	0	0	0	8668	667	23	4		4	LACRT	12	55025703	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	646015	55025703	78826192	511	152129											
GEFT	115557	broad.mit.edu	37	chr12	58009719	58009719	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatccagcgctatgtcctgCaggctgcagaccctgctatc	11	14	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58009719	A	A	58009719	3	1	190	1	0	0	0	0	1	0	0	0	6392	711	25	3	1611	3	GEFT	12	58009719	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2984016	58009719	75842176	512	152130											
TSPAN31	6302	broad.mit.edu	37	chr12	58140819	58140819	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatctgcaagagccagagcCccacatgccagatgtgtgga	12	11	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58140819	T	T	58140819	3	4	190	1	0	0	0	0	1	0	0	0	16771	623	22	4	481	4	TSPAN31	12	58140819	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	131100	58140819	75711076	513	152131											
AVPR1A	552	broad.mit.edu	37	chr12	63541201	63541201	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgagtccttccacatacCcgtactgtttgttgggcttc	10	12	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63541201	A	A	63541201	3	1	190	1	0	0	0	0	1	0	0	0	1236	623	22	2	65	2	AVPR1A	12	63541201	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5400382	63541201	70310694	514	152132											
AVPR1A	552	broad.mit.edu	37	chr12	63544414	63544414	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagtacgctgctgttgCccagcacggccaccgcgaaa	11	16	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63544414	A	A	63544414	3	1	190	1	0	0	0	0	1	0	0	0	1236	739	26	3	1061	3	AVPR1A	12	63544414	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3213	63544414	70307481	515	152133											
TPH2	121278	broad.mit.edu	37	chr12	72366394	72366394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaactctatcccactcatgCttgccgagagtatttgaaaa	6	11	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72366394	A	A	72366394	3	1	190	1	0	0	0	0	1	0	0	0	16526	797	28	3	726	3	TPH2	12	72366394	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	8821980	72366394	61485501	516	152134											
BBS10	79738	broad.mit.edu	37	chr12	76740229	76740229	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttggaatgtatctgttggTgtcagtgtgggggttgaata	16	2	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76740229	C	C	76740229	2	2	190	1	0	0	0	0	0	0	0	1	1341	1683	59	5		5	BBS10	12	76740229	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	4373835	76740229	57111666	517	152135											
TSPAN19	144448	broad.mit.edu	37	chr12	85413327	85413327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatccatctgccccatcCcctgccctgacctattctct	3	19	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85413327	A	A	85413327	1	1	190	0	1	0	0	0	0	0	0	0	16768	638	22	2		2	TSPAN19	12	85413327	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	8673098	85413327	48438568	518	152136											
GALNT4	8693	broad.mit.edu	37	chr12	89916817	89916817	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttgctcaggtacctctgCacataactctgtcacagaat	6	11	4	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89916817	T	T	89916817	3	4	190	1	0	0	0	0	1	0	0	0	6277	710	25	4	230	4	GALNT4	12	89916817	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4503490	89916817	43935078	519	152137											
SLC5A8	160728	broad.mit.edu	37	chr12	101603528	101603528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggccgcccccagcgaaGgcgtagtagatgccgatggc	15	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101603528	T	T	101603528	2	4	190	1	0	0	0	0	0	0	0	1	14785	987	35	2		2	SLC5A8	12	101603528	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	11686711	101603528	32248367	520	152138											
STAB2	55576	broad.mit.edu	37	chr12	104084208	104084208	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactattgtttcaggtaccaTatgctactaggcacatacag	8	9	1	0	rs150834304		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104084208	G	G	104084208	3	3	190	1	0	0	0	0	1	0	0	0	15356	1403	49	5	3307	5	STAB2	12	104084208	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	2480680	104084208	29767687	521	152139											
NUAK1	9891	broad.mit.edu	37	chr12	106477527	106477527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagactcttccccaccagcCtgccaggtaggaagtggctg	12	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106477527	A	A	106477527	1	1	190	0	1	0	0	0	0	0	0	0	10807	696	24	2		2	NUAK1	12	106477527	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2393319	106477527	27374368	522	152140											
FOXN4	121643	broad.mit.edu	37	chr12	109723211	109723211	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggttcagagcccacaGgcagcccttgcgggaggagc	16	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109723211	C	C	109723211	3	2	190	1	0	0	0	0	1	0	0	0	6082	991	35	4	766	4	FOXN4	12	109723211	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3245684	109723211	24128684	523	152141											
CUX2	23316	broad.mit.edu	37	chr12	111729170	111729170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgcagccacagcccggGtgtccctatccatcaggccc	10	19	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111729170	T	T	111729170	1	4	190	0	1	0	0	0	0	0	0	0	4098	1276	44	3		3	CUX2	12	111729170	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2005959	111729170	22122725	524	152142											
C12orf51	283450	broad.mit.edu	37	chr12	112686106	112686106	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaagaaattgtttccaaCagttatcagacatttacctg	5	7	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112686106	A	A	112686106	1	1	190	0	1	0	0	0	0	0	0	0	1709	493	17	3		3	C12orf51	12	112686106	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	956936	112686106	21165789	525	152143											
GATC	283459	broad.mit.edu	37	chr12	120884581	120884582	+	Missense_Mutation	DNP	GC	TT	TT													cgccttcgccgaccggctacGcgccgtggacacagacgggg							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	120884582	TT	TT	120884581	3	4	190	1	0	0	0	0	1	0	0	0	6324	1087	38	3	209	3	GATC	12	120884581	Missense_Mutation	DNP	GC	TCGA-64-5779-01A-01D-1625-08	8198475	120884581	12967314	526	152144											
RSRC2	65117	broad.mit.edu	37	chr12	123005089	123005089	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattattttgctatctgagtCtgcagcgtcttcagttcagt	8	8	5	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123005089	G	G	123005089	1	3	190	0	1	0	0	0	0	0	0	0	13826	928	32	4		4	RSRC2	12	123005089	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2120508	123005089	10846806	527	152145											
DNAH10	196385	broad.mit.edu	37	chr12	124323249	124323250	+	Intron	DNP	GG	TT	TT													tgatcaaggtcagccctctgGgtgtgcaggggctccccgtg							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	124323250	TT	TT	124323249	1	4	190	0	1	0	0	0	0	0	0	0	4638	1247	43	2		2	DNAH10	12	124323249	Intron	DNP	GG	TCGA-64-5779-01A-01D-1625-08	1318160	124323249	9528646	528	152146											
NCOR2	9612	broad.mit.edu	37	chr12	124870472	124870472	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgagaagaggccaggcCcggcacgcagagggggcctg	19	11	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124870472	A	A	124870472	1	1	190	0	1	0	0	0	0	0	0	0	10331	638	22	2		2	NCOR2	12	124870472	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	547223	124870472	8981423	529	152147											
MMP17	4326	broad.mit.edu	37	chr12	132325098	132325098	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctccgtgactcactctGggctgacccctgcctgcagg	11	15	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132325098	T	T	132325098	1	4	190	0	1	0	0	0	0	0	0	0	9749	1363	47	2		2	MMP17	12	132325098	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	7454626	132325098	1526797	530	152148											
C1QTNF9B	387911	broad.mit.edu	37	chr13	24471191	24471191	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaaacctttgttgctgGggccctggacacagcctccg	13	12	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24471191	T	T	24471191	1	4	190	0	1	0	0	0	0	0	0	0	1991	1247	43	2		2	C1QTNF9B	13	24471191	5'Flank	SNP	G	TCGA-64-5779-01A-01D-1625-08		24471191	90698687	531	152149											
PAN3	255967	broad.mit.edu	37	chr13	28835440	28835440	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatatttaaaaagtgcatAtgccaaaaatattaatactt	3	4	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28835440	T	T	28835440	1	4	190	0	1	0	0	0	0	0	0	0	11509	464	16	5		5	PAN3	13	28835440	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	4364249	28835440	86334438	532	152150											
POSTN	10631	broad.mit.edu	37	chr13	38160179	38160179	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatttttccctgcctttGcttattaaaactaatattat	2	7	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38160179	T	T	38160179	1	4	190	0	1	0	0	0	0	0	0	0	12354	1334	46	3		3	POSTN	13	38160179	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	9324739	38160179	77009699	533	152151											
C13orf15	28984	broad.mit.edu	37	chr13	42042950	42042950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagctagaagccttcattGctgatcttgacaaaacttta	7	8	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42042950	T	T	42042950	3	4	190	1	0	0	0	0	1	0	0	0	1731	1319	46	3	396	3	C13orf15	13	42042950	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3882771	42042950	73126928	534	152152											
HTR2A	3356	broad.mit.edu	37	chr13	47466589	47466589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctggagttgaagcggctGtggtggatgggattctggat	18	4	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47466589	T	T	47466589	3	4	190	1	0	0	0	0	1	0	0	0	7511	1368	48	3	874	3	HTR2A	13	47466589	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	5423639	47466589	67703289	535	152153											
EDNRB	1910	broad.mit.edu	37	chr13	78477406	78477406	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagggacagccagaaccacaGagaccacccaaatcaaaaca	7	14	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78477406	T	T	78477406	3	4	190	1	0	0	0	0	1	0	0	0	4960	942	33	3	783	3	EDNRB	13	78477406	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	31010817	78477406	36692472	536	152154											
GPC6	10082	broad.mit.edu	37	chr13	95055375	95055376	+	Frame_Shift_Del	DEL	GA	-	-													cccgcagtggatcccgaccgGagagaggtggactcttctgc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	95055376	-	-	95055375	7	5	190	1	0	1	0	1	0	0	0	0	6667	1161	41	0	1606	0	GPC6	13	95055375	Frame_Shift_Del	DEL	GA	TCGA-64-5779-01A-01D-1625-08	16577969	95055375	20114503	537	152155											
MBNL2	10150	broad.mit.edu	37	chr13	97928509	97928509	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggctttgaacgttgcccCagtcagagatacaaaatggc	10	10	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97928509	T	T	97928509	3	4	190	1	0	0	0	0	1	0	0	0	9447	594	21	4	22	4	MBNL2	13	97928509	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2873134	97928509	17241369	538	152156											
CLYBL	171425	broad.mit.edu	37	chr13	100518493	100518493	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaacatcccattttcaGgtgcaacaagtagtaaagaa	7	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100518493	T	T	100518493	5	4	190	1	0	0	0	0	0	0	1	0	3605	1014	35	2	656	2	CLYBL	13	100518493	Splice_Site	SNP	G	TCGA-64-5779-01A-01D-1625-08	2589984	100518493	14651385	539	152157											
LIG4	3981	broad.mit.edu	37	chr13	108861556	108861556	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggattttgtactatataAccaccaaattctgcaattct	4	10	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108861556	C	C	108861556	2	2	190	1	0	0	0	0	0	0	0	1	8855	30	2	5		5	LIG4	13	108861556	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	8343063	108861556	6308322	540	152158											
COL4A1	1282	broad.mit.edu	37	chr13	110807653	110807653	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaaaagagtagccgatccAcagcgaggaccacccgctgg	11	14	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110807653	T	T	110807653	3	4	190	1	0	0	0	0	1	0	0	0	3721	159	6	5	289	5	COL4A1	13	110807653	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	1946097	110807653	4362225	541	152159											
ARHGEF7	8874	broad.mit.edu	37	chr13	111927998	111927998	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgtcacttacatgtcccaGgtcctgattcagtgtgccgg	10	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111927998	A	A	111927998	2	1	190	1	0	0	0	0	0	0	0	1	913	991	35	4		4	ARHGEF7	13	111927998	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	1120345	111927998	3241880	542	152160											
OR4N2	390429	broad.mit.edu	37	chr14	20295562	20295562	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatctagttggaagacataGtaataacaattaattctgct	7	5	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20295562	T	T	20295562	1	4	190	0	1	0	0	0	0	0	0	0	11171	1044	36	3		3	OR4N2	14	20295562	5'Flank	SNP	G	TCGA-64-5779-01A-01D-1625-08		20295562	87053978	543	152161											
OR4N2	390429	broad.mit.edu	37	chr14	20295869	20295869	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttggtggacttcctctctGcgaagaagataatctcctac	9	10	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20295869	C	C	20295869	3	2	190	1	0	0	0	0	1	0	0	0	11171	1319	46	4	264	4	OR4N2	14	20295869	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	307	20295869	87053671	544	152162											
TEP1	7011	broad.mit.edu	37	chr14	20864835	20864835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggaactgattccaaccCgcagcaggttgcacaggttc	13	12	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20864835	A	A	20864835	3	1	190	1	0	0	0	0	1	0	0	0	15881	652	23	1	6463	1	TEP1	14	20864835	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	568966	20864835	86484705	545	152163											
RPGRIP1	57096	broad.mit.edu	37	chr14	21771691	21771691	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtgtgctcagaaggcTgcagagcttcggtaagagtg	16	6	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21771691	A	A	21771691	2	1	190	1	0	0	0	0	0	0	0	1	13660	1567	55	5		5	RPGRIP1	14	21771691	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	906856	21771691	85577849	546	152164											
RPGRIP1	57096	broad.mit.edu	37	chr14	21793123	21793123	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcagcccggcttgacatAcaccaggccatggccagtga	11	14	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21793123	T	T	21793123	2	4	190	1	0	0	0	0	0	0	0	1	13660	381	14	5		5	RPGRIP1	14	21793123	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	21432	21793123	85556417	547	152165											
IL25	64806	broad.mit.edu	37	chr14	23845093	23845093	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgtgtgatgggctagccgGacctgctggaggctggtccc	16	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23845093	T	T	23845093	1	4	190	0	1	0	0	0	0	0	0	0	7748	1189	41	3		3	IL25	14	23845093	3'UTR	SNP	G	TCGA-64-5779-01A-01D-1625-08	2051970	23845093	83504447	548	152166											
AKAP6	9472	broad.mit.edu	37	chr14	32902804	32902804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatgacacccactgtggaGcagggtgagggagaagaggc	16	8	0	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32902804	T	T	32902804	3	4	190	1	0	0	0	0	1	0	0	0	455	962	34	3	107	3	AKAP6	14	32902804	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	9057711	32902804	74446736	549	152167											
NPAS3	64067	broad.mit.edu	37	chr14	34145375	34145375	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttgaaaatggagaagccTatataatgtctttccttccc	6	8	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34145375	A	A	34145375	1	1	190	0	1	0	0	0	0	0	0	0	10659	1537	53	5		5	NPAS3	14	34145375	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	1242571	34145375	73204165	550	152168											
LRFN5	145581	broad.mit.edu	37	chr14	42373401	42373401	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaccacttctcctctctcTcctgaaaaaatttgccactg	4	15	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42373401	C	C	42373401	1	2	190	0	1	0	0	0	0	0	0	0	9028	1566	54	5		5	LRFN5	14	42373401	3'UTR	SNP	T	TCGA-64-5779-01A-01D-1625-08	8228026	42373401	64976139	551	152169											
WDHD1	11169	broad.mit.edu	37	chr14	55411137	55411137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagtcaggattgtcagaCaaaatattacttctattttc	6	6	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55411137	A	A	55411137	3	1	190	1	0	0	0	0	1	0	0	0	17398	477	17	3	295	3	WDHD1	14	55411137	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	13037736	55411137	51938403	552	152170											
KTN1	3895	broad.mit.edu	37	chr14	56128173	56128173	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatagcaaatgttgataGgtagggatctaagttgtatt	11	2	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56128173	T	T	56128173	1	4	190	0	1	0	0	0	0	0	0	0	8657	1015	35	2		2	KTN1	14	56128173	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	717036	56128173	51221367	553	152171											
SIX6	4990	broad.mit.edu	37	chr14	60976591	60976591	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctaaccccagcaaaaaaCgtgagctcgcccaggcaacc	7	17	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60976591	A	A	60976591	3	1	190	1	0	0	0	0	1	0	0	0	14464	536	19	3	477	3	SIX6	14	60976591	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4848418	60976591	46372949	554	152172											
ZFYVE26	23503	broad.mit.edu	37	chr14	68244368	68244368	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggtagttggccaagaagtGagaagtggccaagctagtgt	16	5	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68244368	A	A	68244368	3	1	190	1	0	0	0	0	1	0	0	0	17794	1290	45	4	2809	4	ZFYVE26	14	68244368	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7267777	68244368	39105172	555	152173											
RGS6	9628	broad.mit.edu	37	chr14	72984966	72984966	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgagagatgcagcagaaTgggtttcatgggacatcagc	15	7	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72984966	A	A	72984966	1	1	190	0	1	0	0	0	0	0	0	0	13418	1479	51	5		5	RGS6	14	72984966	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	4740598	72984966	34364574	556	152174											
TMEM90A	646658	broad.mit.edu	37	chr14	74874738	74874738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcccaggatcagcccagCcccatcaggctggcaagagg	13	15	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74874738	A	A	74874738	1	1	190	0	1	0	0	0	0	0	0	0	16341	754	26	3		3	TMEM90A	14	74874738	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1889772	74874738	32474802	557	152175											
RPS6KL1	83694	broad.mit.edu	37	chr14	75376887	75376887	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagcggtgagcgtggggacAgggagaaaaagagtatggat	20	3	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75376887	T	T	75376887	1	4	190	0	1	0	0	0	0	0	0	0	13770	203	7	5		5	RPS6KL1	14	75376887	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	502149	75376887	31972653	558	152176											
NGB	58157	broad.mit.edu	37	chr14	77737211	77737211	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcaaacaggacggtgcCgtgctccagcgggctgcggc	16	14	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77737211	A	A	77737211	3	1	190	1	0	0	0	0	1	0	0	0	10487	652	23	1	401	1	NGB	14	77737211	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2360324	77737211	29612329	559	152177											
C14orf145	145508	broad.mit.edu	37	chr14	81244339	81244339	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acactgtgatttcaacttctCcagctgaccacgatgaattt	6	11	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81244339	G	G	81244339	3	3	190	1	0	0	0	0	1	0	0	0	1762	864	30	4	1061	4	C14orf145	14	81244339	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3507128	81244339	26105201	560	152178											
TSHR	7253	broad.mit.edu	37	chr14	81448842	81448842	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggctgaggaagaggaggaaGagaatgtcattgggaactgg	19	3	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81448842	T	T	81448842	1	4	190	0	1	0	0	0	0	0	0	0	16747	957	33	3		3	TSHR	14	81448842	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	204503	81448842	25900698	561	152179											
KCNK10	54207	broad.mit.edu	37	chr14	88693897	88693897	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctggtgagaaatatgaaAaagagggagagtggcagaga	15	4	0	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88693897	G	G	88693897	1	3	190	0	1	0	0	0	0	0	0	0	8129	29	1	5		5	KCNK10	14	88693897	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	7245055	88693897	18655643	562	152180											
SLC24A4	123041	broad.mit.edu	37	chr14	92911697	92911697	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaattgtgtggtaagtttttCaagtgtagttttcattgttc	9	3	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92911697	A	A	92911697	1	1	190	0	1	0	0	0	0	0	0	0	14582	841	29	3		3	SLC24A4	14	92911697	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4217800	92911697	14437843	563	152181											
KIAA1409	57578	broad.mit.edu	37	chr14	94046468	94046468	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttgtgtgtgtgtgcGtgtgtcctttttttgatgtc	11	4	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94046468	T	T	94046468	1	4	190	0	1	0	0	0	0	0	0	0	8300	1160	40	3		3	KIAA1409	14	94046468	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1134771	94046468	13303072	564	152182											
KIAA1409	57578	broad.mit.edu	37	chr14	94079385	94079385	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgattgcacctcaaaaaatgCgcctgtcaacttgctttaat	6	10	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94079385	G	G	94079385	3	3	190	1	0	0	0	0	1	0	0	0	8300	768	27	4	3560	4	KIAA1409	14	94079385	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	32917	94079385	13270155	565	152183											
SERPINA3	12	broad.mit.edu	37	chr14	95081151	95081151	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttccagcacctcctgcgcAccctcaatcagtccagcgat	7	18	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95081151	T	T	95081151	3	4	190	1	0	0	0	0	1	0	0	0	14203	159	6	5	375	5	SERPINA3	14	95081151	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	1001766	95081151	12268389	566	152184											
DICER1	23405	broad.mit.edu	37	chr14	95582053	95582053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgactcgtggaccaccatCgtcaggcctcaacacatatg	9	13	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95582053	A	A	95582053	3	1	190	1	0	0	0	0	1	0	0	0	4561	884	31	3	3978	3	DICER1	14	95582053	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	500902	95582053	11767487	567	152185											
TUBGCP5	114791	broad.mit.edu	37	chr15	22867135	22867135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaagttggtggttGttgatcattttttatgtgta	9	1	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22867135	T	T	22867135	1	4	190	0	1	0	0	0	0	0	0	0	16895	1392	48	3		3	TUBGCP5	15	22867135	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08		22867135	79664257	568	152186											
GABRB3	2562	broad.mit.edu	37	chr15	26793272	26793272	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcaacagaatatttccatGagcatccacctaattggacg	7	10	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26793272	T	T	26793272	3	4	190	1	0	0	0	0	1	0	0	0	6228	1290	45	3	335	3	GABRB3	15	26793272	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3926137	26793272	75738120	569	152187											
HERC2	8924	broad.mit.edu	37	chr15	28467327	28467327	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcaccttgagcagaagcAttcatatcttcctcaacgtt	7	11	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28467327	C	C	28467327	3	2	190	1	0	0	0	0	1	0	0	0	7125	214	8	5	9237	5	HERC2	15	28467327	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	1674055	28467327	74064065	570	152188											
CHRM5	1133	broad.mit.edu	37	chr15	34355202	34355202	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctacatcctcatgggacGctgggctctcgggagtctgg	13	13	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34355202	A	A	34355202	3	1	190	1	0	0	0	0	1	0	0	0	3411	1087	38	4	286	4	CHRM5	15	34355202	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	5887875	34355202	68176190	571	152189											
TMCO5A	145942	broad.mit.edu	37	chr15	38243304	38243304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagctacatgttttttcatGtaagattcataaatccagat	6	6	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38243304	T	T	38243304	3	4	190	1	0	0	0	0	1	0	0	0	16122	1377	48	3	774	3	TMCO5A	15	38243304	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3888102	38243304	64288088	572	152190											
MGA	23269	broad.mit.edu	37	chr15	42028381	42028381	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attattattttacatcagaaAagagctggaagtcttcctgc	7	7	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42028381	T	T	42028381	4	4	190	1	0	0	0	0	0	1	0	0	9633	15	1	5	3965	5	MGA	15	42028381	Nonsense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	3785077	42028381	60503011	573	152191											
GALK2	2585	broad.mit.edu	37	chr15	49531528	49531528	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggtctgttgtgctggcttGgtgacgctcacagtgctggg	16	8	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49531528	C	C	49531528	3	2	190	1	0	0	0	0	1	0	0	0	6266	1339	47	4	510	4	GALK2	15	49531528	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7503147	49531528	52999864	574	152192											
SPPL2A	84888	broad.mit.edu	37	chr15	51041888	51041888	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggttataaagcatgcagTagtccttggttgtgccattt	11	6	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51041888	C	C	51041888	3	2	190	1	0	0	0	0	1	0	0	0	15206	1638	57	5	1496	5	SPPL2A	15	51041888	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	1510360	51041888	51489504	575	152193											
TLN2	83660	broad.mit.edu	37	chr15	63058593	63058593	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatcgccacagcggctcGgggagaagcagctcagctgg	14	14	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63058593	T	T	63058593	3	4	190	1	0	0	0	0	1	0	0	0	16071	1116	39	1	5318	1	TLN2	15	63058593	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	12016705	63058593	39472799	576	152194											
MAP2K5	5607	broad.mit.edu	37	chr15	67995595	67995595	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgttggtggctcctcacCttagctgagcttattttggt	11	8	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67995595	T	T	67995595	1	4	190	0	1	0	0	0	0	0	0	0	9332	696	24	4		4	MAP2K5	15	67995595	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4937002	67995595	34535797	577	152195											
CIB2	10518	broad.mit.edu	37	chr15	78403368	78403368	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtacagatgaggaaactgaGgcacagagaggttctgtgat	14	5	1	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78403368	T	T	78403368	1	4	190	0	1	0	0	0	0	0	0	0	3452	1015	35	2		2	CIB2	15	78403368	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	10407773	78403368	24128024	578	152196											
MORF4L1	10933	broad.mit.edu	37	chr15	79187165	79187165	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctcttgtttaaacagtacGaattggagcaatgttggctt	9	6	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79187165	A	A	79187165	3	1	190	1	0	0	0	0	1	0	0	0	9800	1058	37	4	969	4	MORF4L1	15	79187165	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	783797	79187165	23344227	579	152197											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84651629	84651629	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aataagcagtttgaagcagcAgttaaacaaggagcatatag	10	5	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84651629	T	T	84651629	2	4	190	1	0	0	0	0	0	0	0	1	276	175	7	5		5	ADAMTSL3	15	84651629	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	5464464	84651629	17879763	580	152198											
ZNF592	9640	broad.mit.edu	37	chr15	85328123	85328123	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacagaggagacagagggGctggtaagcagaccctcact	13	10	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85328123	A	A	85328123	2	1	190	1	0	0	0	0	0	0	0	1	18149	1190	42	4		4	ZNF592	15	85328123	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	676494	85328123	17203269	581	152199											
BLM	641	broad.mit.edu	37	chr15	91312742	91312742	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccttctgttccggtgatGgctcttacggccacagctaa	9	12	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91312742	A	A	91312742	3	1	190	1	0	0	0	0	1	0	0	0	1451	1348	47	4	2523	4	BLM	15	91312742	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	5984619	91312742	11218650	582	152200											
CHD2	1106	broad.mit.edu	37	chr15	93545297	93545297	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttgcttgaaaacaagcttCtaagtatagacagtgatgaa	8	5	1	4	rs141599665	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93545297	G	G	93545297	1	3	190	0	1	0	0	0	0	0	0	0	3356	928	32	4		4	CHD2	15	93545297	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2232555	93545297	8986095	583	152201											
WDR90	197335	broad.mit.edu	37	chr16	701983	701983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacggctgctgccggcaccCacgtgttgactcacgagtcg	12	15	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	701983	A	A	701983	3	1	190	1	0	0	0	0	1	0	0	0	17464	594	21	2	1031	2	WDR90	16	701983	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08		701983	89652770	584	152202											
ANKS3	124401	broad.mit.edu	37	chr16	4750843	4750843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtggagcctaacaggCcatggggatgccaccgccat	13	13	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4750843	A	A	4750843	1	1	190	0	1	0	0	0	0	0	0	0	690	754	26	3		3	ANKS3	16	4750843	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4048860	4750843	85603910	585	152203											
OTOA	146183	broad.mit.edu	37	chr16	21730668	21730668	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctttctttcctctcctcctCacttccttcctctcccgagt	2	19	5	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21730668	A	A	21730668	1	1	190	0	1	0	0	0	0	0	0	0	11396	841	29	3		3	OTOA	16	21730668	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	16979825	21730668	68624085	586	152204											
PALB2	79728	broad.mit.edu	37	chr16	23641491	23641491	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttctgtatccatgcgttTaggactcagttcctctggaa	8	10	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23641491	C	C	23641491	3	2	190	1	0	0	0	0	1	0	0	0	11500	1763	61	5	1612	5	PALB2	16	23641491	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	1910823	23641491	66713262	587	152205											
GSG1L	146395	broad.mit.edu	37	chr16	27802613	27802613	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaggccagggttctgggGgcaccactctggtggtcttg	15	11	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27802613	T	T	27802613	1	4	190	0	1	0	0	0	0	0	0	0	6887	1247	43	2		2	GSG1L	16	27802613	3'UTR	SNP	G	TCGA-64-5779-01A-01D-1625-08	4161122	27802613	62552140	588	152206											
SBK1	388228	broad.mit.edu	37	chr16	28331793	28331793	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcggggccgcctgccgGggctgccttcgcagtggcgc	19	15	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28331793	C	C	28331793	3	2	190	1	0	0	0	0	1	0	0	0	13972	1232	43	4	836	4	SBK1	16	28331793	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	529180	28331793	62022960	589	152207											
ABCC12	94160	broad.mit.edu	37	chr16	48121986	48121986	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaaacaaagccattcctaaCgatgactttcctgggaacca	7	12	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48121986	T	T	48121986	2	4	190	1	0	0	0	0	0	0	0	1	52	523	19	4		4	ABCC12	16	48121986	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	19790193	48121986	42232767	590	152208											
ABCC12	94160	broad.mit.edu	37	chr16	48141376	48141376	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccaaggggctgcagacatGagcacatggcaggggctgac	16	11	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48141376	T	T	48141376	1	4	190	0	1	0	0	0	0	0	0	0	52	1305	45	3		3	ABCC12	16	48141376	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	19390	48141376	42213377	591	152209											
SALL1	6299	broad.mit.edu	37	chr16	51174546	51174546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctggagggatggacatGccatatgggatgccagtact	13	8	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51174546	T	T	51174546	2	4	190	1	0	0	0	0	0	0	0	1	13921	1306	46	3		3	SALL1	16	51174546	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	3033170	51174546	39180207	592	152210											
IRX5	10265	broad.mit.edu	37	chr16	54967483	54967483	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccggccccggcgccgtcaCgctcgccctcggcgcagtgt	14	20	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54967483	G	G	54967483	3	3	190	1	0	0	0	0	1	0	0	0	7917	536	19	4	1160	4	IRX5	16	54967483	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3792937	54967483	35387270	593	152211											
CAPNS2	84290	broad.mit.edu	37	chr16	55601252	55601252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttaccaaatgattgtccGccggtatgctaatgaagatg	9	8	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55601252	T	T	55601252	3	4	190	1	0	0	0	0	1	0	0	0	2660	1087	38	3	586	3	CAPNS2	16	55601252	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	633769	55601252	34753501	594	152212											
GPR56	9289	broad.mit.edu	37	chr16	57695697	57695697	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacatggccatgctagccAccatggtggtgcagatcctg	11	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57695697	T	T	57695697	3	4	190	1	0	0	0	0	1	0	0	0	6765	159	6	5	1832	5	GPR56	16	57695697	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	2094445	57695697	32659056	595	152213											
CNGB1	1258	broad.mit.edu	37	chr16	57994860	57994860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagagtgccctgagggaaCcggccagcgcactaacagcc	13	14	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57994860	T	T	57994860	1	4	190	0	1	0	0	0	0	0	0	0	3632	522	18	4		4	CNGB1	16	57994860	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	299163	57994860	32359893	596	152214											
CNOT1	23019	broad.mit.edu	37	chr16	58583887	58583887	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaaccatactatacagcaCatggctccttgcaaaactaa	5	11	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58583887	T	T	58583887	1	4	190	0	1	0	0	0	0	0	0	0	3649	493	17	4		4	CNOT1	16	58583887	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	589027	58583887	31770866	597	152215											
CNOT1	23019	broad.mit.edu	37	chr16	58587804	58587804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcatttcatgtcagaaCagaagcatcactaacaaaat	4	10	4	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58587804	A	A	58587804	1	1	190	0	1	0	0	0	0	0	0	0	3649	493	17	3		3	CNOT1	16	58587804	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3917	58587804	31766949	598	152216											
CDH11	1009	broad.mit.edu	37	chr16	65006037	65006037	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtccaggcatattcttGggaaagagtaagctccagcc	11	9	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65006037	T	T	65006037	1	4	190	0	1	0	0	0	0	0	0	0	3127	1363	47	2		2	CDH11	16	65006037	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	6418233	65006037	25348716	599	152217											
VAC14	55697	broad.mit.edu	37	chr16	70732762	70732762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcaggccgacctggaaggCtctgtgtctcagcctgggag	16	12	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70732762	A	A	70732762	1	1	190	0	1	0	0	0	0	0	0	0	17238	812	28	3		3	VAC14	16	70732762	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5726725	70732762	19621991	600	152218											
GLG1	2734	broad.mit.edu	37	chr16	74502911	74502911	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtgctccttggcttccTgcagagtgtcattgcgcacg	11	14	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74502911	A	A	74502911	3	1	190	1	0	0	0	0	1	0	0	0	6500	1580	55	5	1290	5	GLG1	16	74502911	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	3770149	74502911	15851842	601	152219											
MBTPS1	8720	broad.mit.edu	37	chr16	84124572	84124572	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaggagcatttatttaatGaaagtatccctttcattaaa	5	5	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84124572	T	T	84124572	1	4	190	0	1	0	0	0	0	0	0	0	9454	1305	45	3		3	MBTPS1	16	84124572	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	9621661	84124572	6230181	602	152220											
MVD	4597	broad.mit.edu	37	chr16	88722590	88722590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgtccttcccgtcggCctgctctcccatctgccact	8	18	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88722590	A	A	88722590	3	1	190	1	0	0	0	0	1	0	0	0	10088	739	26	3	700	3	MVD	16	88722590	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	4598018	88722590	1632163	603	152221											
WDR81	124997	broad.mit.edu	37	chr17	1639551	1639551	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccccttgctgcccaacccCcgcccctgtccagccatcac	5	24	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1639551	T	T	1639551	1	4	190	0	1	0	0	0	0	0	0	0	17457	638	22	4		4	WDR81	17	1639551	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08		1639551	79555659	604	152222											
ZZEF1	23140	broad.mit.edu	37	chr17	3937517	3937517	+	Frame_Shift_Del	DEL	C	-	-													ggtttcattcaggtggcctgCgtttgagatgacaacctgaa					rs141392657		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3937517	-	-	3937517	7	5	190	1	0	1	0	1	0	0	0	0	18384	768	27	0	2573	0	ZZEF1	17	3937517	Frame_Shift_Del	DEL	C	TCGA-64-5779-01A-01D-1625-08	2297966	3937517	77257693	605	152223											
MYBBP1A	10514	broad.mit.edu	37	chr17	4455406	4455406	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagggggccgagagaggacaCgcgtcgcccgcacctggctg	17	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4455406	T	T	4455406	1	4	190	0	1	0	0	0	0	0	0	0	10102	551	19	4		4	MYBBP1A	17	4455406	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	517889	4455406	76739804	606	152224											
DHRS7C	201140	broad.mit.edu	37	chr17	9694599	9694599	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcatggccatgactccCatcttgttctgggggacaac	10	12	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9694599	A	A	9694599	3	1	190	1	0	0	0	0	1	0	0	0	4537	594	21	2	956	2	DHRS7C	17	9694599	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5239193	9694599	71500611	607	152225											
MYH4	4622	broad.mit.edu	37	chr17	10359945	10359945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccataaacatcaggactGccaaaattccctttagaatt	4	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10359945	T	T	10359945	1	4	190	0	1	0	0	0	0	0	0	0	10131	1334	46	3		3	MYH4	17	10359945	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	665346	10359945	70835265	608	152226											
DNAH9	1770	broad.mit.edu	37	chr17	11806089	11806089	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcgggacatagagggatcTgctaagagctggaaaaagtt	14	5	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11806089	C	C	11806089	2	2	190	1	0	0	0	0	0	0	0	1	4648	1567	55	5		5	DNAH9	17	11806089	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	1446144	11806089	69389121	609	152227											
CCDC144A	9720	broad.mit.edu	37	chr17	16649782	16649782	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcttcgcctccatctccCccagcagagtctcagggttg	9	15	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16649782	T	T	16649782	1	4	190	0	1	0	0	0	0	0	0	0	2803	638	22	4		4	CCDC144A	17	16649782	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4843693	16649782	64545428	610	152228											
CYTSB	92521	broad.mit.edu	37	chr17	19999911	19999911	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagcaggttcaagtgatGgagacatgtttttcttttct	10	6	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19999911	T	T	19999911	1	4	190	0	1	0	0	0	0	0	0	0	4243	1363	47	2		2	CYTSB	17	19999911	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	3350129	19999911	61195299	611	152229											
MAP2K3	5606	broad.mit.edu	37	chr17	21201829	21201829	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctccctggctcaccctggaGaggcttcccgaacagggctc	11	16	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21201829	T	T	21201829	1	4	190	0	1	0	0	0	0	0	0	0	9330	957	33	3		3	MAP2K3	17	21201829	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1201918	21201829	59993381	612	152230											
POLDIP2	26073	broad.mit.edu	37	chr17	26680783	26680783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgagttttgcctttcaCctccttggagccatggccag	11	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26680783	A	A	26680783	3	1	190	1	0	0	0	0	1	0	0	0	12289	507	18	3	762	3	POLDIP2	17	26680783	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5478954	26680783	54514427	613	152231											
CCL8	6355	broad.mit.edu	37	chr17	32646625	32646625	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccctttttaaggggagaCcaaaagaggaattaagaaga	10	6	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32646625	G	G	32646625	1	3	190	0	1	0	0	0	0	0	0	0	2937	522	18	4		4	CCL8	17	32646625	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5965842	32646625	48548585	614	152232											
LIG3	3980	broad.mit.edu	37	chr17	33319597	33319597	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaagcctcgcgcaacctGcaggatgtggtggagcgggt	15	10	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33319597	A	A	33319597	2	1	190	1	0	0	0	0	0	0	0	1	8854	1306	46	4		4	LIG3	17	33319597	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	672972	33319597	47875613	615	152233											
CCL4L2	388372	broad.mit.edu	37	chr17	34540017	34540017	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggaaggtcacctgagcctgGatgcttctccatgagccgca	13	12	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34540017	C	C	34540017	1	2	190	0	1	0	0	0	0	0	0	0	2934	1189	41	4		4	CCL4L2	17	34540017	3'UTR	SNP	G	TCGA-64-5779-01A-01D-1625-08	1220420	34540017	46655193	616	152234											
SYNRG	11276	broad.mit.edu	37	chr17	35930851	35930851	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaggctgaggggcatggagCccgcaggacctgaaggtatc	16	10	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35930851	G	G	35930851	3	3	190	1	0	0	0	0	1	0	0	0	15579	739	26	4	2837	4	SYNRG	17	35930851	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1390834	35930851	45264359	617	152235											
RAPGEFL1	51195	broad.mit.edu	37	chr17	38340712	38340712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaggaagagatgccagGgggccttagcttatatggct	15	7	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38340712	T	T	38340712	1	4	190	0	1	0	0	0	0	0	0	0	13157	1247	43	2		2	RAPGEFL1	17	38340712	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2409861	38340712	42854498	618	152236											
KRT28	162605	broad.mit.edu	37	chr17	38953436	38953436	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caagggcttcgtactccgctCgcatgttgttcaacaaaacc	8	13	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38953436	G	G	38953436	3	3	190	1	0	0	0	0	1	0	0	0	8536	884	31	4	626	4	KRT28	17	38953436	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	612724	38953436	42241774	619	152237											
KRT31	3881	broad.mit.edu	37	chr17	39553787	39553787	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcaggcagaagttgtagGgcatagtgctgggagggagg	21	4	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39553787	T	T	39553787	3	4	190	1	0	0	0	0	1	0	0	0	8538	1232	43	2	1273	2	KRT31	17	39553787	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	600351	39553787	41641423	620	152238											
STAT3	6774	broad.mit.edu	37	chr17	40474406	40474406	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagaccagtggagacaccagGatattggtagcatccatgat	11	8	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40474406	A	A	40474406	2	1	190	1	0	0	0	0	0	0	0	1	15384	1164	41	4		4	STAT3	17	40474406	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	920619	40474406	40720804	621	152239											
FZD2	2535	broad.mit.edu	37	chr17	42636375	42636375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcttcgtgtcgctcttccGcatccgcaccatcatgaagc	9	16	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42636375	T	T	42636375	3	4	190	1	0	0	0	0	1	0	0	0	6190	1087	38	3	1321	3	FZD2	17	42636375	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2161969	42636375	38558835	622	152240											
LRRC46	90506	broad.mit.edu	37	chr17	45911922	45911922	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttctttctccacccttcCcctccccttgacccctgtgg	4	20	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45911922	T	T	45911922	1	4	190	0	1	0	0	0	0	0	0	0	9090	638	22	4		4	LRRC46	17	45911922	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3275547	45911922	35283288	623	152241											
HOXB3	3213	broad.mit.edu	37	chr17	46628146	46628146	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggctctcgtagctgggggtCatggagtgtaaggcgttcat	17	7	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46628146	G	G	46628146	3	3	190	1	0	0	0	0	1	0	0	0	7369	826	29	4	453	4	HOXB3	17	46628146	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	716224	46628146	34567064	624	152242											
RSAD1	55316	broad.mit.edu	37	chr17	48561096	48561096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttttggccctggggctacGcaccgatgtggggatcactc	14	11	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48561096	T	T	48561096	3	4	190	1	0	0	0	0	1	0	0	0	13805	1087	38	3	1108	3	RSAD1	17	48561096	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1932950	48561096	32634114	625	152243											
ABCC3	8714	broad.mit.edu	37	chr17	48745281	48745281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaaacaatgtgctggacGccgagaaggcctttgtgtct	11	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48745281	T	T	48745281	3	4	190	1	0	0	0	0	1	0	0	0	54	1087	38	3	1827	3	ABCC3	17	48745281	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	184185	48745281	32449929	626	152244											
CUEDC1	404093	broad.mit.edu	37	chr17	55950845	55950845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaacagaaatagctcagCctgggtttaaacatcaggaa	11	8	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55950845	A	A	55950845	1	1	190	0	1	0	0	0	0	0	0	0	4085	754	26	3		3	CUEDC1	17	55950845	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	7205564	55950845	25244365	627	152245											
TRIM37	4591	broad.mit.edu	37	chr17	57139868	57139868	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtaatcaaattagtatacTacagaactctgaaagaaaga	6	6	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57139868	A	A	57139868	1	1	190	0	1	0	0	0	0	0	0	0	16635	1537	53	5		5	TRIM37	17	57139868	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	1189023	57139868	24055342	628	152246											
C17orf71	55181	broad.mit.edu	37	chr17	57288128	57288128	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgagacagaaggtcctgcCgctccttaaaacagccatta	9	12	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57288128	G	G	57288128	3	3	190	1	0	0	0	0	1	0	0	0	1894	652	23	4	718	4	C17orf71	17	57288128	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	148260	57288128	23907082	629	152247											
CLTC	1213	broad.mit.edu	37	chr17	57762959	57762959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaataggatgcaatgcaGtatgcttctgaatctaaaga	9	5	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57762959	T	T	57762959	3	4	190	1	0	0	0	0	1	0	0	0	3598	1020	36	3	4735	3	CLTC	17	57762959	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	474831	57762959	23432251	630	152248											
TLK2	11011	broad.mit.edu	37	chr17	60663513	60663513	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggcatttgatctaacagaGcaaagatacgtagctgtgaa	10	6	1	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60663513	C	C	60663513	3	2	190	1	0	0	0	0	1	0	0	0	16067	962	34	4	1444	4	TLK2	17	60663513	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2900554	60663513	20531697	631	152249											
CACNG1	786	broad.mit.edu	37	chr17	65051404	65051404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccgggggaccatgtcgCgggggattctccgctccacc	17	14	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65051404	A	A	65051404	1	1	190	0	1	0	0	0	0	0	0	0	2582	783	27	3		3	CACNG1	17	65051404	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4387891	65051404	16143806	632	152250											
SDK2	54549	broad.mit.edu	37	chr17	71346823	71346824	+	Frame_Shift_Ins	INS	-	C	C													tggcgtacttcttgctctggINSccccggatgatgagcacgaa							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71346824	C	C	71346823	7	5	190	1	0	1	1	0	0	0	0	0	14082	1190	42	0	669	0	SDK2	17	71346823	Frame_Shift_Ins	INS	-	TCGA-64-5779-01A-01D-1625-08	6295419	71346823	9848387	633	152251											
KIF19	124602	broad.mit.edu	37	chr17	72348372	72348372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagactacaacctggccGtcccgcagcgcctggaagag	12	15	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72348372	A	A	72348372	3	1	190	1	0	0	0	0	1	0	0	0	8352	1145	40	4	1927	4	KIF19	17	72348372	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1001549	72348372	8846838	634	152252											
GPR142	350383	broad.mit.edu	37	chr17	72367995	72367995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcatcgtgttcgcgggcttCctcctgcagggagcagtgct	14	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72367995	A	A	72367995	3	1	190	1	0	0	0	0	1	0	0	0	6715	854	30	3	659	3	GPR142	17	72367995	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	19623	72367995	8827215	635	152253											
GPRC5C	55890	broad.mit.edu	37	chr17	72443106	72443106	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcccagagccaccaggcggCcacaccgccgaaagacggca	13	17	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72443106	G	G	72443106	3	3	190	1	0	0	0	0	1	0	0	0	6792	739	26	4	1422	4	GPRC5C	17	72443106	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	75111	72443106	8752104	636	152254											
RAB37	326624	broad.mit.edu	37	chr17	72739393	72739393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtagcatccgtgctgctGcctaagtcccctctgtgatc	10	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72739393	T	T	72739393	1	4	190	0	1	0	0	0	0	0	0	0	13035	1334	46	3		3	RAB37	17	72739393	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	296287	72739393	8455817	637	152255											
C17orf28	283987	broad.mit.edu	37	chr17	72956051	72956052	+	Intron	DNP	CC	AA	AA													ggctgccaagaggagaagccCctggtgagcaggcgtcctcc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72956052	AA	AA	72956051	1	1	190	0	1	0	0	0	0	0	0	0	1869	638	22	2		2	C17orf28	17	72956051	Intron	DNP	CC	TCGA-64-5779-01A-01D-1625-08	216658	72956051	8239159	638	152256											
PGS1	9489	broad.mit.edu	37	chr17	76395662	76395662	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttgccctcctgctctgcAggctggagggcagtggaata	13	11	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76395662	T	T	76395662	1	4	190	0	1	0	0	0	0	0	0	0	11903	203	7	5		5	PGS1	17	76395662	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	3439611	76395662	4799548	639	152257											
USP36	57602	broad.mit.edu	37	chr17	76794510	76794510	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaggggcacagtcagcggcGatagctgaggctggcagcct	16	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76794510	A	A	76794510	3	1	190	1	0	0	0	0	1	0	0	0	17194	1058	37	4	11	4	USP36	17	76794510	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	398848	76794510	4400700	640	152258											
CBX8	57332	broad.mit.edu	37	chr17	77768252	77768252	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagaaaatataactctagaGataatctttccaacaaaaac	3	7	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77768252	A	A	77768252	1	1	190	0	1	0	0	0	0	0	0	0	2750	957	33	4		4	CBX8	17	77768252	3'UTR	SNP	G	TCGA-64-5779-01A-01D-1625-08	973742	77768252	3426958	641	152259											
RNF213	57674	broad.mit.edu	37	chr17	78327866	78327866	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagaagctgtgtgcagagCgccgtgggcatgctcagaga	16	9	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78327866	T	T	78327866	2	4	190	1	0	0	0	0	0	0	0	1	13588	767	27	4		4	RNF213	17	78327866	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	559614	78327866	2867344	642	152260											
P4HB	5034	broad.mit.edu	37	chr17	79805065	79805065	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaccgggagcctcatgccAcccccaacccactcctcccc	7	22	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79805065	C	C	79805065	1	2	190	0	1	0	0	0	0	0	0	0	11453	174	6	5		5	P4HB	17	79805065	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1477199	79805065	1390145	643	152261											
YES1	7525	broad.mit.edu	37	chr18	736745	736745	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattctggaaaaccctgtaTagtcaagagagttaagcaaa	8	6	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	736745	G	G	736745	1	3	190	0	1	0	0	0	0	0	0	0	17601	1421	49	5		5	YES1	18	736745	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08		736745	77340503	644	152262											
NDC80	10403	broad.mit.edu	37	chr18	2577894	2577894	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggattttaatctaaactGtgattgttgtcataggtatt	8	3	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2577894	T	T	2577894	1	4	190	0	1	0	0	0	0	0	0	0	10337	1392	48	3		3	NDC80	18	2577894	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1841149	2577894	75499354	645	152263											
LAMA1	284217	broad.mit.edu	37	chr18	6974861	6974861	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taattacttatgagacacacTttaaaaaagagagctgcttt	6	6	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6974861	A	A	6974861	1	1	190	0	1	0	0	0	0	0	0	0	8677	1624	56	5		5	LAMA1	18	6974861	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	4396967	6974861	71102387	646	152264											
ANKRD30B	374860	broad.mit.edu	37	chr18	14809858	14809858	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaataacccaaaagacccCaaaacctagtgtaatccctt	3	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14809858	A	A	14809858	1	1	190	0	1	0	0	0	0	0	0	0	659	609	21	2		2	ANKRD30B	18	14809858	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	7834997	14809858	63267390	647	152265											
OSBPL1A	114876	broad.mit.edu	37	chr18	21897448	21897448	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtaattaagtgaggacAgtcatatttgagtctttaga	9	3	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21897448	G	G	21897448	1	3	190	0	1	0	0	0	0	0	0	0	11371	203	7	5		5	OSBPL1A	18	21897448	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	7087590	21897448	56179800	648	152266											
ZNF521	25925	broad.mit.edu	37	chr18	22902163	22902163	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttggggtctgaaaaatatCaacactgtaagtatggggtt	12	4	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22902163	A	A	22902163	1	1	190	0	1	0	0	0	0	0	0	0	18092	841	29	3		3	ZNF521	18	22902163	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1004715	22902163	55175085	649	152267											
KCTD1	284252	broad.mit.edu	37	chr18	24039513	24039513	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttggaggaaaggcaccaTgtgagggcaaggttaagtga	15	5	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24039513	A	A	24039513	1	1	190	0	1	0	0	0	0	0	0	0	8166	1479	51	5		5	KCTD1	18	24039513	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	1137350	24039513	54037735	650	152268											
B4GALT6	9331	broad.mit.edu	37	chr18	29225226	29225228	+	Intron	DEL	AAA	-	-													ttttaaatttatcaagacttAaagacatttgtctctgtatt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29225228	-	-	29225226	6	5	190	0	1	1	0	1	0	0	0	0	1280	377	13	0		0	B4GALT6	18	29225226	Intron	DEL	AAA	TCGA-64-5779-01A-01D-1625-08	5185713	29225226	48852022	651	152269											
KIAA1012	22878	broad.mit.edu	37	chr18	29451056	29451056	+	Missense_Mutation	SNP	C	T	T													aatcatattcttgatcaagaCttacatgagtagctgcttgt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29451056	T	T	29451056	3	4	190	1	0	0	0	0	1	0	0	0	8274	565	20	4	2277	4	KIAA1012	18	29451056	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	225830	29451056	48626192	652	152270	653	2									
KIAA1012	22878	broad.mit.edu	37	chr18	29451058	29451058	+	Silent	SNP	T	A	A													tcatattcttgatcaagactTacatgagtagctgcttgttt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29451058	A	A	29451058	2	1	190	1	0	0	0	0	0	0	0	1	8274	1741	61	5		5	KIAA1012	18	29451058	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	2	29451058	48626190	653	152271	653	2									
FHOD3	80206	broad.mit.edu	37	chr18	34092356	34092356	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagctgggatggaaggtGgacagggacagtatttgaag	17	5	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34092356	T	T	34092356	1	4	190	0	1	0	0	0	0	0	0	0	5940	1363	47	2		2	FHOD3	18	34092356	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	4641298	34092356	43984892	654	152272											
HAUS1	115106	broad.mit.edu	37	chr18	43704683	43704683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attcgataacgttatttaaaAtatactaatgttaatgcttt	4	4	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43704683	G	G	43704683	1	3	190	0	1	0	0	0	0	0	0	0	7031	116	4	5		5	HAUS1	18	43704683	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	9612327	43704683	34372565	655	152273											
TCEB3C	162699	broad.mit.edu	37	chr18	44555242	44555242	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggcaggcctggagccCgagtacaccggcatcttagc	14	13	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44555242	T	T	44555242	2	4	190	1	0	0	0	0	0	0	0	1	15805	639	23	4		4	TCEB3C	18	44555242	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	850559	44555242	33522006	656	152274											
TCEB3B	51224	broad.mit.edu	37	chr18	44561664	44561664	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agctgtgcaggcgtcgctgtCccggcggtcgcagctctgtc	15	14	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44561664	T	T	44561664	1	4	190	0	1	0	0	0	0	0	0	0	15804	870	30	4		4	TCEB3B	18	44561664	5'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	6422	44561664	33515584	657	152275											
KATNAL2	83473	broad.mit.edu	37	chr18	44585852	44585852	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagcatcggactttgcttgAtggagtaggcaggtacatcc	12	10	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44585852	T	T	44585852	1	4	190	0	1	0	0	0	0	0	0	0	8056	348	12	5		5	KATNAL2	18	44585852	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	24188	44585852	33491396	658	152276											
KATNAL2	83473	broad.mit.edu	37	chr18	44595782	44595782	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttccttccttgtgtgtgaGactgacttctgtctataagc	8	10	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44595782	A	A	44595782	1	1	190	0	1	0	0	0	0	0	0	0	8056	957	33	4		4	KATNAL2	18	44595782	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	9930	44595782	33481466	659	152277											
DCC	1630	broad.mit.edu	37	chr18	50278530	50278530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgctccgcggagtccgaCcgaggagttccagtgatcaa	13	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50278530	A	A	50278530	3	1	190	1	0	0	0	0	1	0	0	0	4315	506	18	3	204	3	DCC	18	50278530	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	5682748	50278530	27798718	660	152278											
WDR7	23335	broad.mit.edu	37	chr18	54363729	54363729	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaaagattatttcactatgGtagagccaagttatattact	6	5	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54363729	C	C	54363729	1	2	190	0	1	0	0	0	0	0	0	0	17447	1276	44	4		4	WDR7	18	54363729	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	4085199	54363729	23713519	661	152279											
MALT1	10892	broad.mit.edu	37	chr18	56348550	56348550	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaacacactgaagttcttCagcttctcagccccccaggt	8	14	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56348550	T	T	56348550	4	4	190	1	0	0	0	0	0	1	0	0	9294	827	29	4	364	4	MALT1	18	56348550	Nonsense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1984821	56348550	21728698	662	152280											
SERPINB4	6318	broad.mit.edu	37	chr18	61310851	61310851	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaactcctggaaaagcatcAgattcctgtcagaatgactt	9	9	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61310851	G	G	61310851	1	3	190	0	1	0	0	0	0	0	0	0	14216	203	7	5		5	SERPINB4	18	61310851	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	4962301	61310851	16766397	663	152281											
HMSD	284293	broad.mit.edu	37	chr18	61621801	61621801	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcctcacagtaagtcatActtgtttattaggaaaataa	5	6	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61621801	G	G	61621801	1	3	190	0	1	0	0	0	0	0	0	0	7313	406	14	5		5	HMSD	18	61621801	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	310950	61621801	16455447	664	152282											
CDH7	1005	broad.mit.edu	37	chr18	63529993	63529993	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttcattgtggacagtggAtctccctcacttagcagcac	8	11	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63529993	T	T	63529993	2	4	190	1	0	0	0	0	0	0	0	1	3145	320	12	5		5	CDH7	18	63529993	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	1908192	63529993	14547255	665	152283											
RTTN	25914	broad.mit.edu	37	chr18	67727029	67727029	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtatcaagtcatgaataCagtttgtgtaaatttatctc	6	6	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67727029	T	T	67727029	1	4	190	0	1	0	0	0	0	0	0	0	13848	493	17	4		4	RTTN	18	67727029	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4197036	67727029	10350219	666	152284											
ZADH2	284273	broad.mit.edu	37	chr18	72921030	72921030	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatggcctgcgcctccgccCgctctctgcgccgacgctgg	13	19	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72921030	A	A	72921030	1	1	190	0	1	0	0	0	0	0	0	0	17638	667	23	1		1	ZADH2	18	72921030	5'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	5194001	72921030	5156218	667	152285											
TSHZ1	10194	broad.mit.edu	37	chr18	72999000	72999000	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacctggacgacagccccaaGggagggctggacattctcaa	13	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72999000	C	C	72999000	3	2	190	1	0	0	0	0	1	0	0	0	16748	991	35	4	1505	4	TSHZ1	18	72999000	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	77970	72999000	5078248	668	152286											
ELANE	1991	broad.mit.edu	37	chr19	852863	852863	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcactcagcacccgcacccGgtgtgtccccaggcaccgcg	12	19	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	852863	A	A	852863	1	1	190	0	1	0	0	0	0	0	0	0	5090	1131	39	4		4	ELANE	19	852863	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08		852863	58276120	669	152287											
SIRT6	51548	broad.mit.edu	37	chr19	4180786	4180786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacaatcacagacctgaagtCggggatgccagaggcagtgc	13	11	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4180786	A	A	4180786	3	1	190	1	0	0	0	0	1	0	0	0	14455	884	31	3	908	3	SIRT6	19	4180786	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3327923	4180786	54948197	670	152288											
STXBP2	6813	broad.mit.edu	37	chr19	7707105	7707105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggcccagagaaaacccGctcccagctgctgataatgg	11	14	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7707105	T	T	7707105	3	4	190	1	0	0	0	0	1	0	0	0	15471	1087	38	3	714	3	STXBP2	19	7707105	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	3526319	7707105	51421878	671	152289											
MUC16	94025	broad.mit.edu	37	chr19	9049834	9049834	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctctgcaggatggataacCcatgaagctgttgtatctgg	12	8	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9049834	T	T	9049834	4	4	190	1	0	0	0	0	0	1	0	0	10067	624	22	4	12046	4	MUC16	19	9049834	Nonsense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	1342729	9049834	50079149	672	152290											
MUC16	94025	broad.mit.edu	37	chr19	9063009	9063009	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagcagtggcaccagtgGgcactccagaaaggacagtg	13	11	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9063009	T	T	9063009	3	4	190	1	0	0	0	0	1	0	0	0	10067	1232	43	2	19414	2	MUC16	19	9063009	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	13175	9063009	50065974	673	152291											
EPS15L1	58513	broad.mit.edu	37	chr19	16528760	16528760	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaccagcaccactcaccGggccgggcgtgcctctctcc	10	19	2	1	rs140677972		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16528760	A	A	16528760	3	1	190	1	0	0	0	0	1	0	0	0	5235	1130	39	4	1540	4	EPS15L1	19	16528760	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	7465751	16528760	42600223	674	152292											
TMEM59L	25789	broad.mit.edu	37	chr19	18724957	18724957	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagagcagcaggcctgTagccacggctgctggagcca	16	12	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18724957	C	C	18724957	2	2	190	1	0	0	0	0	0	0	0	1	16309	1644	57	5		5	TMEM59L	19	18724957	Silent	SNP	T	TCGA-64-5779-01A-01D-1625-08	2196197	18724957	40404026	675	152293											
ZNF43	7594	broad.mit.edu	37	chr19	21990856	21990856	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttagtaagggttgaggaCcacttaaaggctttgccaca	11	7	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21990856	A	A	21990856	3	1	190	1	0	0	0	0	1	0	0	0	18030	508	18	3	450	3	ZNF43	19	21990856	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3265899	21990856	37138127	676	152294											
ZNF536	9745	broad.mit.edu	37	chr19	31039485	31039485	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcggccagatgccgcctccCtcccgggctcctcggtaact	11	18	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039485	T	T	31039485	3	4	190	1	0	0	0	0	1	0	0	0	18101	681	24	4	2969	4	ZNF536	19	31039485	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	9048629	31039485	28089498	677	152295											
CHST8	64377	broad.mit.edu	37	chr19	34180192	34180192	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcgacctggaacaatgCggctggcctgcatgttctct	11	14	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34180192	A	A	34180192	2	1	190	1	0	0	0	0	0	0	0	1	3441	759	27	3		3	CHST8	19	34180192	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	3140707	34180192	24948791	678	152296											
RYR1	6261	broad.mit.edu	37	chr19	38934511	38934511	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtagaaggtctgcagaaCgccaaggcaagcatgagact	15	8	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38934511	A	A	38934511	1	1	190	0	1	0	0	0	0	0	0	0	13879	551	19	3		3	RYR1	19	38934511	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	4754319	38934511	20194472	679	152297											
RYR1	6261	broad.mit.edu	37	chr19	39009665	39009665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcacaggatagggactgGgtcttaggttcaggttaggg	18	5	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39009665	T	T	39009665	1	4	190	0	1	0	0	0	0	0	0	0	13879	1247	43	2		2	RYR1	19	39009665	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	75154	39009665	20119318	680	152298											
PSMC4	5704	broad.mit.edu	37	chr19	40478082	40478082	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcactgtccgtgtcccgGccccagaccggcctgtcctt	10	19	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40478082	T	T	40478082	2	4	190	1	0	0	0	0	0	0	0	1	12795	1190	42	3		3	PSMC4	19	40478082	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	1468417	40478082	18650901	681	152299											
ZNF780B	163131	broad.mit.edu	37	chr19	40541581	40541581	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactacgattaaaggacttCccacattctttacattcaaa	4	10	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40541581	G	G	40541581	2	3	190	1	0	0	0	0	0	0	0	1	18282	842	30	4		4	ZNF780B	19	40541581	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	63499	40541581	18587402	682	152300											
LTBP4	8425	broad.mit.edu	37	chr19	41111393	41111393	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtggagcgtgtgtctggCccttgggaggaggcggacgc	20	9	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41111393	T	T	41111393	2	4	190	1	0	0	0	0	0	0	0	1	9163	726	26	4		4	LTBP4	19	41111393	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	569812	41111393	18017590	683	152301											
CYP2S1	29785	broad.mit.edu	37	chr19	41704338	41704338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcctggctccatcacaGcctacctccctgcccccatt	5	21	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41704338	T	T	41704338	1	4	190	0	1	0	0	0	0	0	0	0	4207	986	34	3		3	CYP2S1	19	41704338	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	592945	41704338	17424645	684	152302											
CEACAM6	4680	broad.mit.edu	37	chr19	42266086	42266086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccaagcccataactcaGccactggcctcaataggacc	8	15	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42266086	A	A	42266086	3	1	190	1	0	0	0	0	1	0	0	0	3226	971	34	4	927	4	CEACAM6	19	42266086	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	561748	42266086	16862897	685	152303											
CIC	23152	broad.mit.edu	37	chr19	42797203	42797203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccatcgccagcattcccGtggggtcctttgaggcaggt	13	13	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42797203	T	T	42797203	3	4	190	1	0	0	0	0	1	0	0	0	3455	1145	40	3	3623	3	CIC	19	42797203	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	531117	42797203	16331780	686	152304											
PSG6	5675	broad.mit.edu	37	chr19	43420707	43420707	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaaagatggggccctgTgtcctgagaaggtctcttca	14	8	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43420707	A	A	43420707	1	1	190	0	1	0	0	0	0	0	0	0	12765	1711	59	5		5	PSG6	19	43420707	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	623504	43420707	15708276	687	152305											
CD177	57126	broad.mit.edu	37	chr19	43859930	43859930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggcctcctcaggctcaGgggaggtaagcctgggacat	15	10	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43859930	T	T	43859930	3	4	190	1	0	0	0	0	1	0	0	0	3001	1000	35	2	511	2	CD177	19	43859930	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	439223	43859930	15269053	688	152306											
IRGQ	126298	broad.mit.edu	37	chr19	44099262	44099262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagcaccagtaccagcaCgttggcttccgccgcccagg	13	16	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44099262	A	A	44099262	3	1	190	1	0	0	0	0	1	0	0	0	7909	536	19	3	1650	3	IRGQ	19	44099262	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	239332	44099262	15029721	689	152307											
CKM	1158	broad.mit.edu	37	chr19	45823047	45823047	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggcatcttttttcttcttCttcttctttttttttttttg	3	8	6	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45823047	T	T	45823047	1	4	190	0	1	0	0	0	0	0	0	0	3479	928	32	4		4	CKM	19	45823047	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1723785	45823047	13305936	690	152308											
SYMPK	8189	broad.mit.edu	37	chr19	46345342	46345342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcaagtgatctgcccgCctcagcttcccaaagtgctg	10	15	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46345342	A	A	46345342	1	1	190	0	1	0	0	0	0	0	0	0	15558	754	26	3		3	SYMPK	19	46345342	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	522295	46345342	12783641	691	152309											
ZC3H4	23211	broad.mit.edu	37	chr19	47584880	47584880	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttacacgggaaatcacGttcatggcaaattaaggtaa	9	8	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47584880	A	A	47584880	5	1	190	1	0	0	0	0	0	0	1	0	17696	1159	40	4	2601	4	ZC3H4	19	47584880	Splice_Site	SNP	G	TCGA-64-5779-01A-01D-1625-08	1239538	47584880	11544103	692	152310											
PLA2G4C	8605	broad.mit.edu	37	chr19	48556422	48556422	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgaagcataaccaaacCaacaaagaaaaggcatcatg	6	11	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48556422	A	A	48556422	1	1	190	0	1	0	0	0	0	0	0	0	12098	609	21	2		2	PLA2G4C	19	48556422	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	971542	48556422	10572561	693	152311											
SLC17A7	57030	broad.mit.edu	37	chr19	49937171	49937171	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcgaggtgaggaccggcccCgctccgccccagcgccaccc	13	20	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49937171	G	G	49937171	1	3	190	0	1	0	0	0	0	0	0	0	14535	667	23	4		4	SLC17A7	19	49937171	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1380749	49937171	9191812	694	152312											
CPT1C	126129	broad.mit.edu	37	chr19	50208532	50208532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagaagatcttcaacaccaCgcggattccaggggtccaaa	10	12	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50208532	A	A	50208532	3	1	190	1	0	0	0	0	1	0	0	0	3865	536	19	3	971	3	CPT1C	19	50208532	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	271361	50208532	8920451	695	152313											
SHANK1	50944	broad.mit.edu	37	chr19	51218870	51218870	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggttgggtagggggctccAgtggtagggggctatagggg	23	4	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51218870	G	G	51218870	1	3	190	0	1	0	0	0	0	0	0	0	14377	203	7	5		5	SHANK1	19	51218870	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	1010338	51218870	7910113	696	152314											
KLK3	354	broad.mit.edu	37	chr19	51361540	51361540	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaccacctgctacgcCtcaggctggggcagcattga	14	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51361540	A	A	51361540	2	1	190	1	0	0	0	0	0	0	0	1	8476	668	24	2		2	KLK3	19	51361540	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	142670	51361540	7767443	697	152315											
SIGLEC9	27180	broad.mit.edu	37	chr19	51629331	51629331	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtctccatgtctttctGtcccagacccgcctcagaac	9	16	4	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51629331	C	C	51629331	1	2	190	0	1	0	0	0	0	0	0	0	14428	1392	48	4		4	SIGLEC9	19	51629331	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	267791	51629331	7499652	698	152316											
FPR1	2357	broad.mit.edu	37	chr19	52249336	52249336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcccggaagtcctggccCatgaagacatagagcatggg	12	12	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52249336	A	A	52249336	3	1	190	1	0	0	0	0	1	0	0	0	6098	594	21	2	144	2	FPR1	19	52249336	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	620005	52249336	6879647	699	152317											
ZNF480	147657	broad.mit.edu	37	chr19	52819189	52819189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaaaaattcagatgggaGggagtgcatcaaaggtgtga	14	4	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52819189	T	T	52819189	3	4	190	1	0	0	0	0	1	0	0	0	18062	1000	35	2	312	2	ZNF480	19	52819189	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	569853	52819189	6309794	700	152318											
ZNF813	126017	broad.mit.edu	37	chr19	53994890	53994890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggagagaaacgttacaaGtgtaatgagtgtggcaagac	13	4	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53994890	T	T	53994890	3	4	190	1	0	0	0	0	1	0	0	0	18304	1020	36	3	1414	3	ZNF813	19	53994890	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1175701	53994890	5134093	701	152319											
PRKCG	5582	broad.mit.edu	37	chr19	54406361	54406361	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctatgggaagtctgtcgAttggtggtcctttggagttc	14	8	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54406361	G	G	54406361	3	3	190	1	0	0	0	0	1	0	0	0	12618	333	12	5	1668	5	PRKCG	19	54406361	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	411471	54406361	4722622	702	152320											
VSTM1	284415	broad.mit.edu	37	chr19	54567134	54567134	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggctgcccggttcgtcccCaggatgtgcagatagaggag	15	12	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54567134	A	A	54567134	1	1	190	0	1	0	0	0	0	0	0	0	17355	609	21	2		2	VSTM1	19	54567134	5'UTR	SNP	C	TCGA-64-5779-01A-01D-1625-08	160773	54567134	4561849	703	152321											
LILRB2	10288	broad.mit.edu	37	chr19	54784409	54784409	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccctcggtgctggcgggaCagagacacacagagagaaat	14	10	0	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54784409	G	G	54784409	1	3	190	0	1	0	0	0	0	0	0	0	8863	493	17	4		4	LILRB2	19	54784409	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	217275	54784409	4344574	704	152322											
LENG8	114823	broad.mit.edu	37	chr19	54969076	54969076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagccagtcctgcctcccGctccttgtgactcttgttct	7	17	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54969076	T	T	54969076	1	4	190	0	1	0	0	0	0	0	0	0	8796	1102	38	3		3	LENG8	19	54969076	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	184667	54969076	4159907	705	152323											
LILRB1	10859	broad.mit.edu	37	chr19	55142814	55142814	+	Intron	DEL	C	-	-													tcactggggacaaggggccaCccccgtgccgctggggatgg							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55142814	-	-	55142814	6	5	190	0	1	1	0	1	0	0	0	0	8862	522	18	0		0	LILRB1	19	55142814	Intron	DEL	C	TCGA-64-5779-01A-01D-1625-08	173738	55142814	3986169	706	152324											
KIR2DL3	3804	broad.mit.edu	37	chr19	55272307	55272307	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgggtgtgagggagggatCagggcacaggatggcagaca	19	6	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55272307	A	A	55272307	1	1	190	0	1	0	0	0	0	0	0	0	8388	841	29	3		3	KIR2DL3	19	55272307	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	129493	55272307	3856676	707	152325											
KIR3DL1	3811	broad.mit.edu	37	chr19	55341568	55341568	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggactctgatgaacaAgaccctgaggaggtgacata	11	10	1	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55341568	G	G	55341568	2	3	190	1	0	0	0	0	0	0	0	1	8391	69	3	5		5	KIR3DL1	19	55341568	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	69261	55341568	3787415	708	152326											
NLRP7	199713	broad.mit.edu	37	chr19	55445797	55445797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagtaagtcaggtgttacCctttctcttctatagcccca	7	13	3	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55445797	A	A	55445797	1	1	190	0	1	0	0	0	0	0	0	0	10577	638	22	2		2	NLRP7	19	55445797	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	104229	55445797	3683186	709	152327											
TMEM150B	284417	broad.mit.edu	37	chr19	55831571	55831571	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaagtgggagggagacCcaccaagaactcctgggacc	15	10	0	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55831571	G	G	55831571	1	3	190	0	1	0	0	0	0	0	0	0	16191	638	22	4		4	TMEM150B	19	55831571	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	385774	55831571	3297412	710	152328											
U2AF2	11338	broad.mit.edu	37	chr19	56180771	56180771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagagggagactgggtctGggccccctgtgacgccgctg	17	12	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56180771	T	T	56180771	1	4	190	0	1	0	0	0	0	0	0	0	16949	1363	47	2		2	U2AF2	19	56180771	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	349200	56180771	2948212	711	152329											
NLRP8	126205	broad.mit.edu	37	chr19	56485022	56485022	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcttctctcccataggataGagaactgcaaccttacacag	7	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56485022	A	A	56485022	3	1	190	1	0	0	0	0	1	0	0	0	10578	943	33	4	2565	4	NLRP8	19	56485022	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	304251	56485022	2643961	712	152330											
ZSCAN4	201516	broad.mit.edu	37	chr19	58189890	58189890	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatcagaaaggatcccatGgagtccaaaaatcatacaaa	6	9	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58189890	T	T	58189890	4	4	190	1	0	0	0	0	0	1	0	0	18366	1349	47	2	929	2	ZSCAN4	19	58189890	Nonsense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1704868	58189890	939093	713	152331											
ZNF135	7694	broad.mit.edu	37	chr19	58578379	58578379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtctgaaccctgatctccCacatcaaccaatgactcctg	5	15	3	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58578379	A	A	58578379	3	1	190	1	0	0	0	0	1	0	0	0	17851	594	21	2	730	2	ZNF135	19	58578379	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	388489	58578379	550604	714	152332											
SLC4A11	83959	broad.mit.edu	37	chr20	3218177	3218177	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgcacacacacactccccGagaggtactcacttgaatcc	6	16	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3218177	A	A	3218177	1	1	190	0	1	0	0	0	0	0	0	0	14766	1073	37	4		4	SLC4A11	20	3218177	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08		3218177	59807343	715	152333											
SIGLEC1	6614	broad.mit.edu	37	chr20	3672474	3672474	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccagacagcccgctctagTgggagctccagcccctctcg	11	17	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3672474	C	C	3672474	1	2	190	0	1	0	0	0	0	0	0	0	14418	1711	59	5		5	SIGLEC1	20	3672474	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	454297	3672474	59353046	716	152334											
C20orf30	29058	broad.mit.edu	37	chr20	5086823	5086823	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacttattcccacatgccCgtcagcttacccctttgctg	5	16	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5086823	A	A	5086823	1	1	190	0	1	0	0	0	0	0	0	0	2132	667	23	1		1	C20orf30	20	5086823	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1414349	5086823	57938697	717	152335											
TRMT6	51605	broad.mit.edu	37	chr20	5921898	5921898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagtattacctctttgtaCtgacagtagaccacaaacgg	7	11	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5921898	A	A	5921898	3	1	190	1	0	0	0	0	1	0	0	0	16693	564	20	3	299	3	TRMT6	20	5921898	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	835075	5921898	57103622	718	152336											
PLCB1	23236	broad.mit.edu	37	chr20	8737868	8737868	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacaacatgagcaagatcctCcagttcattagtgccactga	8	11	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8737868	A	A	8737868	1	1	190	0	1	0	0	0	0	0	0	0	12122	870	30	3		3	PLCB1	20	8737868	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2815970	8737868	54287652	719	152337											
PLCB1	23236	broad.mit.edu	37	chr20	8862318	8862318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaaattcaaaagactgcCcctcgagattttggaattcg	8	9	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8862318	A	A	8862318	3	1	190	1	0	0	0	0	1	0	0	0	12122	623	22	2	3702	2	PLCB1	20	8862318	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	124450	8862318	54163202	720	152338											
BPIL1	80341	broad.mit.edu	37	chr20	31606253	31606253	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagcgggggagtgggaaagGagaggaggagctggaatagt	23	2	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31606253	A	A	31606253	1	1	190	0	1	0	0	0	0	0	0	0	1500	1189	41	4		4	BPIL1	20	31606253	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	22743935	31606253	31419267	721	152339											
PLUNC	51297	broad.mit.edu	37	chr20	31825664	31825664	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcccacaggtcttgcaggAagcttgacaaatggtgagtt	12	8	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31825664	G	G	31825664	2	3	190	1	0	0	0	0	0	0	0	1	12210	233	9	5		5	PLUNC	20	31825664	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	219411	31825664	31199856	722	152340											
C20orf117	140710	broad.mit.edu	37	chr20	35443738	35443738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcttggtgtccctggggcCctcgctgttgtcgggggcct	17	12	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35443738	A	A	35443738	3	1	190	1	0	0	0	0	1	0	0	0	2105	623	22	2	2984	2	C20orf117	20	35443738	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3618074	35443738	27581782	723	152341											
RALGAPB	57148	broad.mit.edu	37	chr20	37126060	37126060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagccattcagaaactgGcccgtgagtcatctctcatg	10	11	4	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37126060	T	T	37126060	3	4	190	1	0	0	0	0	1	0	0	0	13123	1203	42	3	464	3	RALGAPB	20	37126060	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	1682322	37126060	25899460	724	152342											
CHD6	84181	broad.mit.edu	37	chr20	40046053	40046053	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagatactagtgatctgaGagattaggatatcctctttt	10	5	2	4			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40046053	A	A	40046053	1	1	190	0	1	0	0	0	0	0	0	0	3360	957	33	4		4	CHD6	20	40046053	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	2919993	40046053	22979467	725	152343											
MYBL2	4605	broad.mit.edu	37	chr20	42343993	42343993	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagggctgagtgctggccAtccctgggggtcctgcagtg	16	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42343993	T	T	42343993	1	4	190	0	1	0	0	0	0	0	0	0	10104	232	8	5		5	MYBL2	20	42343993	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2297940	42343993	20681527	726	152344											
TOX2	84969	broad.mit.edu	37	chr20	42694601	42694601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctcagccccacactgcacCagcagctgtcactgccccct	7	21	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42694601	A	A	42694601	3	1	190	1	0	0	0	0	1	0	0	0	16502	595	21	2	1366	2	TOX2	20	42694601	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	350608	42694601	20330919	727	152345											
HNF4A	3172	broad.mit.edu	37	chr20	43043227	43043227	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagatgtgtgtgagtccatGaaggagcagctgctggttct	15	7	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43043227	A	A	43043227	3	1	190	1	0	0	0	0	1	0	0	0	7320	1290	45	4	644	4	HNF4A	20	43043227	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	348626	43043227	19982293	728	152346											
SEMG1	6406	broad.mit.edu	37	chr20	43836174	43836174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccaatgatcatgaccagtCccgaaaaagtcagcaatatg	8	10	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43836174	A	A	43836174	3	1	190	1	0	0	0	0	1	0	0	0	14157	855	30	3	242	3	SEMG1	20	43836174	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	792947	43836174	19189346	729	152347											
SLC13A3	64849	broad.mit.edu	37	chr20	45188622	45188622	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtgatggtgacagccctTtgagagggttcagcctcaag	14	9	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45188622	C	C	45188622	1	2	190	0	1	0	0	0	0	0	0	0	14506	1856	64	5		5	SLC13A3	20	45188622	3'UTR	SNP	T	TCGA-64-5779-01A-01D-1625-08	1352448	45188622	17836898	730	152348											
SLC13A3	64849	broad.mit.edu	37	chr20	45191994	45191994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgcatagaggccttgcCcgcccccttgcggcccaccc	10	20	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45191994	A	A	45191994	1	1	190	0	1	0	0	0	0	0	0	0	14506	638	22	2		2	SLC13A3	20	45191994	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3372	45191994	17833526	731	152349											
PREX1	57580	broad.mit.edu	37	chr20	47276568	47276568	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgaaagcggaagtactgGgactcatccctgaactcgct	11	11	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47276568	A	A	47276568	2	1	190	1	0	0	0	0	0	0	0	1	12582	1219	43	4		4	PREX1	20	47276568	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	2084574	47276568	15748952	732	152350											
SLC9A8	23315	broad.mit.edu	37	chr20	48431651	48431651	+	Frame_Shift_Del	DEL	G	-	-													ctggcaagcccatcctccccGtgcagacaggggagcaggcc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48431651	-	-	48431651	7	5	190	1	0	1	0	1	0	0	0	0	14834	1145	40	0	139	0	SLC9A8	20	48431651	Frame_Shift_Del	DEL	G	TCGA-64-5779-01A-01D-1625-08	1155083	48431651	14593869	733	152351											
ATP9A	10079	broad.mit.edu	37	chr20	50224145	50224145	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgagagacagagaaagGttagagccggtttcgcgggg	17	5	0	5			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50224145	C	C	50224145	1	2	190	0	1	0	0	0	0	0	0	0	1202	1276	44	4		4	ATP9A	20	50224145	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	1792494	50224145	12801375	734	152352											
CYP24A1	1591	broad.mit.edu	37	chr20	52774238	52774238	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaaatccacaaatttataAtaatgatggttgccaacatg	6	8	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52774238	T	T	52774238	1	4	190	0	1	0	0	0	0	0	0	0	4187	116	4	5		5	CYP24A1	20	52774238	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	2550093	52774238	10251282	735	152353											
CASS4	57091	broad.mit.edu	37	chr20	55027988	55027988	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcattgccaatggaaggCtcctttttaagcggaactgt	10	8	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55027988	A	A	55027988	3	1	190	1	0	0	0	0	1	0	0	0	2709	797	28	3	1774	3	CASS4	20	55027988	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2253750	55027988	7997532	736	152354											
BMP7	655	broad.mit.edu	37	chr20	55758737	55758737	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgccggggccctgctggGttcctgtggtgggtctgtga	17	12	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55758737	T	T	55758737	1	4	190	0	1	0	0	0	0	0	0	0	1471	1276	44	3		3	BMP7	20	55758737	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	730749	55758737	7266783	737	152355											
TPTE	7179	broad.mit.edu	37	chr21	10959690	10959690	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaagccctgtttaactaaaGataagagatccatcaatggc	9	8	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10959690	T	T	10959690	1	4	190	0	1	0	0	0	0	0	0	0	16554	957	33	3		3	TPTE	21	10959690	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08		10959690	37170205	738	152356											
BAGE2	85319	broad.mit.edu	37	chr21	11047558	11047558	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgataccctttgtcacacgTatcacacactagcatcttgc	5	13	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11047558	C	C	11047558	1	2	190	0	1	0	0	0	0	0	0	0	1297	1653	57	5		5	BAGE2	21	11047558	3'UTR	SNP	T	TCGA-64-5779-01A-01D-1625-08	87868	11047558	37082337	739	152357											
NCAM2	4685	broad.mit.edu	37	chr21	22907044	22907044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgataacacattattattGttgtattacatatttaaata	3	3	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22907044	T	T	22907044	1	4	190	0	1	0	0	0	0	0	0	0	10298	1392	48	3		3	NCAM2	21	22907044	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	11859486	22907044	25222851	740	152358											
GART	2618	broad.mit.edu	37	chr21	34907104	34907104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaccaaggtctccccaGgggcttttcagcctgaagac	12	12	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34907104	T	T	34907104	1	4	190	0	1	0	0	0	0	0	0	0	6305	1015	35	2		2	GART	21	34907104	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	12000060	34907104	13222791	741	152359											
SON	6651	broad.mit.edu	37	chr21	34931472	34931472	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctattatgtggttttgattCtaagaaattacatgttctac	7	5	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34931472	T	T	34931472	1	4	190	0	1	0	0	0	0	0	0	0	15040	928	32	4		4	SON	21	34931472	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	24368	34931472	13198423	742	152360											
SON	6651	broad.mit.edu	37	chr21	34931573	34931573	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagagtaaagaagatgatgAtgtaatagtgaataaacctc	9	4	0	6			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34931573	T	T	34931573	3	4	190	1	0	0	0	0	1	0	0	0	15040	333	12	5	6377	5	SON	21	34931573	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	101	34931573	13198322	743	152361											
ITSN1	6453	broad.mit.edu	37	chr21	35183407	35183407	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccgctccagtgaaaccagtGactgattcaacatctgcccc	7	16	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35183407	T	T	35183407	2	4	190	1	0	0	0	0	0	0	0	1	7996	1277	45	3		3	ITSN1	21	35183407	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	251834	35183407	12946488	744	152362											
DSCAM	1826	broad.mit.edu	37	chr21	42064832	42064832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaccgcaacattgcCtctcatggttttctggtcct	8	12	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42064832	A	A	42064832	3	1	190	1	0	0	0	0	1	0	0	0	4808	681	24	2	5750	2	DSCAM	21	42064832	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	6881425	42064832	6065063	745	152363											
AIRE	326	broad.mit.edu	37	chr21	45708424	45708424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgcccctttgcatcctGgtggtcccacagcagaccgg	10	17	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45708424	T	T	45708424	1	4	190	0	1	0	0	0	0	0	0	0	437	1363	47	2		2	AIRE	21	45708424	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	3643592	45708424	2421471	746	152364											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46011577	46011577	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcgtgctggcagggggaGgaggtgcagcaagctggctg	21	8	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46011577	A	A	46011577	2	1	190	1	0	0	0	0	0	0	0	1	8584	987	35	4		4	KRTAP10-6	21	46011577	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	303153	46011577	2118318	747	152365											
APOBEC3F	200316	broad.mit.edu	37	chr22	39448223	39448223	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaggggaggtggccgagTtcctggccaggcacagcaac	17	11	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39448223	C	C	39448223	3	2	190	1	0	0	0	0	1	0	0	0	795	1725	60	5	1029	5	APOBEC3F	22	39448223	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08		39448223	11856343	748	152366											
EFCAB6	64800	broad.mit.edu	37	chr22	43996080	43996080	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgatggacagcaggcgaataGttaatacccaatttctgtaa	9	8	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43996080	C	C	43996080	3	2	190	1	0	0	0	0	1	0	0	0	4979	1020	36	4	1800	4	EFCAB6	22	43996080	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	4547857	43996080	7308486	749	152367											
SAMM50	25813	broad.mit.edu	37	chr22	44353026	44353026	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgcccgagatgaaacagaAttctatttgggctcatgtat	9	7	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44353026	G	G	44353026	1	3	190	0	1	0	0	0	0	0	0	0	13940	116	4	5		5	SAMM50	22	44353026	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	356946	44353026	6951540	750	152368											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45122459	45122459	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgtttaccttcagaaCcagctgctgacaaaaggcat	8	11	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45122459	T	T	45122459	2	4	190	1	0	0	0	0	0	0	0	1	12707	506	18	4		4	PRR5-ARHGAP8	22	45122459	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	769433	45122459	6182107	751	152369											
IL17REL	400935	broad.mit.edu	37	chr22	50439075	50439075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcactgcccaccccacCcggccagctccacttgcatg	9	19	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50439075	A	A	50439075	1	1	190	0	1	0	0	0	0	0	0	0	7714	638	22	2		2	IL17REL	22	50439075	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5316616	50439075	865491	752	152370											
MLC1	23209	broad.mit.edu	37	chr22	50515832	50515832	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagaagctgcacccacctTctttttcttgcagtcctcct	6	15	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50515832	C	C	50515832	3	2	190	1	0	0	0	0	1	0	0	0	9705	1792	62	5	638	5	MLC1	22	50515832	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	76757	50515832	788734	753	152371											
SBF1	6305	broad.mit.edu	37	chr22	50893614	50893614	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagggctcagcggtcaggGtgcacagtcccggcccaccc	14	17	2	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50893614	T	T	50893614	1	4	190	0	1	0	0	0	0	0	0	0	13970	1276	44	3		3	SBF1	22	50893614	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	377782	50893614	410952	754	152372											
CSF2RA	1438	broad.mit.edu	37	chrX	1401547	1401547	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagaggcaaccttctcacTgtgtgatattttctctcctg	10	10	2	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1401547	A	A	1401547	1	1	190	0	1	0	0	0	0	0	0	0	3968	1595	55	5		5	CSF2RA	23	1401547	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08		1401547	153869013	755	152373											
ASMT	438	broad.mit.edu	37	chrX	1743139	1743140	+	Intron	DEL	CT	-	-													ggaatctcactgctttttccCtgtttttttgtgtgtgtttc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1743140	-	-	1743139	6	5	190	0	1	1	0	1	0	0	0	0	1049	696	24	0		0	ASMT	23	1743139	Intron	DEL	CT	TCGA-64-5779-01A-01D-1625-08	341592	1743139	153527421	756	152374											
MXRA5	25878	broad.mit.edu	37	chrX	3238371	3238371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcaacaacggaggtgcCggagggccaaagtccagatg	16	9	0	1	rs142902268		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3238371	A	A	3238371	2	1	190	1	0	0	0	0	0	0	0	1	10097	639	23	1		1	MXRA5	23	3238371	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	1495232	3238371	152032189	757	152375											
PRKX	5613	broad.mit.edu	37	chrX	3573108	3573108	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactctggttcccaatctttCcctgcctgacctgccacaac	5	17	2	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3573108	A	A	3573108	1	1	190	0	1	0	0	0	0	0	0	0	12633	870	30	3		3	PRKX	23	3573108	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	334737	3573108	151697452	758	152376											
ARHGAP6	395	broad.mit.edu	37	chrX	11197549	11197549	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctccagagagacatcaatCccacggtcaaattcctcacg	6	15	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11197549	G	G	11197549	2	3	190	1	0	0	0	0	0	0	0	1	889	842	30	4		4	ARHGAP6	23	11197549	Silent	SNP	C	TCGA-64-5779-01A-01D-1625-08	7624441	11197549	144073011	759	152377											
ATXN3L	92552	broad.mit.edu	37	chrX	13337398	13337398	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcttggtctgatgttccaGactcatcactttcttctgat	6	11	6	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13337398	T	T	13337398	3	4	190	1	0	0	0	0	1	0	0	0	1218	942	33	3	415	3	ATXN3L	23	13337398	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	2139849	13337398	141933162	760	152378											
GPM6B	2824	broad.mit.edu	37	chrX	13825626	13825626	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgattaaaaaatgtttataGggcgaattccacccatgccc	7	9	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13825626	A	A	13825626	1	1	190	0	1	0	0	0	0	0	0	0	6681	1015	35	4		4	GPM6B	23	13825626	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	488228	13825626	141444934	761	152379											
MBTPS2	51360	broad.mit.edu	37	chrX	21900607	21900607	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatgcagtaccctgctttgCtttggatggacaatggattc	10	8	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21900607	T	T	21900607	3	4	190	1	0	0	0	0	1	0	0	0	9455	797	28	4	1436	4	MBTPS2	23	21900607	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	8074981	21900607	133369953	762	152380											
FAM47B	170062	broad.mit.edu	37	chrX	34961518	34961518	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggaatcctgcccgcgGcctcccgagactccggtgtc	14	15	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34961518	T	T	34961518	2	4	190	1	0	0	0	0	0	0	0	1	5621	1190	42	3		3	FAM47B	23	34961518	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	13060911	34961518	120309042	763	152381											
SRPX	8406	broad.mit.edu	37	chrX	38024248	38024248	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taccaaagcctctgggtattCtccattttcaaagagtttgt	7	9	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38024248	A	A	38024248	1	1	190	0	1	0	0	0	0	0	0	0	15282	928	32	3		3	SRPX	23	38024248	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	3062730	38024248	117246312	764	152382											
HDAC6	10013	broad.mit.edu	37	chrX	48675905	48675905	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccccaaatcctgatccttGtggggacctggatgctcccc	9	17	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48675905	T	T	48675905	1	4	190	0	1	0	0	0	0	0	0	0	7078	1392	48	3		3	HDAC6	23	48675905	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	10651657	48675905	106594655	765	152383											
ITIH5L	347365	broad.mit.edu	37	chrX	54783793	54783793	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaacttgagattgtatttGggaatgtgcttaggctctca	12	5	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54783793	A	A	54783793	3	1	190	1	0	0	0	0	1	0	0	0	7978	1348	47	4	1251	4	ITIH5L	23	54783793	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	6107888	54783793	100486767	766	152384											
AWAT1	158833	broad.mit.edu	37	chrX	69454532	69454532	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagatctttgcctccctcaGgctcccgagaatcatggctc	9	14	3	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69454532	T	T	69454532	1	4	190	1	0	0	0	0	0	0	0	0	1239	1015	35	2		2	AWAT1	23	69454532	Translation_Start_Site	SNP	G	TCGA-64-5779-01A-01D-1625-08	14670739	69454532	85816028	767	152385											
MED12	9968	broad.mit.edu	37	chrX	70342771	70342771	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaacattgcaagagcaAtaatatgtctgagagggaag	10	5	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70342771	G	G	70342771	1	3	190	0	1	0	0	0	0	0	0	0	9521	116	4	5		5	MED12	23	70342771	Intron	SNP	A	TCGA-64-5779-01A-01D-1625-08	888239	70342771	84927789	768	152386											
RLIM	51132	broad.mit.edu	37	chrX	73811802	73811802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagaactactaccaccacCagaacctcctcttccactcc	2	20	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73811802	A	A	73811802	3	1	190	1	0	0	0	0	1	0	0	0	13501	594	21	2	530	2	RLIM	23	73811802	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	3469031	73811802	81458758	769	152387											
KIAA2022	340533	broad.mit.edu	37	chrX	73961445	73961445	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgaccatcatccatattgaCtggcccctgctggaaaggaa	9	13	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73961445	G	G	73961445	3	3	190	1	0	0	0	0	1	0	0	0	8339	565	20	4	1611	4	KIAA2022	23	73961445	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	149643	73961445	81309115	770	152388											
UPRT	139596	broad.mit.edu	37	chrX	74519631	74519631	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atacgaattggaaagatcctGattcagagtgatgaggagac	12	5	1	6			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74519631	T	T	74519631	2	4	190	1	0	0	0	0	0	0	0	1	17140	1277	45	3		3	UPRT	23	74519631	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	558186	74519631	80750929	771	152389											
ATP7A	538	broad.mit.edu	37	chrX	77284872	77284872	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actccaactgctgtgatggtGggtacaggagtaggtgctca	14	8	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77284872	T	T	77284872	2	4	190	1	0	0	0	0	0	0	0	1	1194	1335	47	2		2	ATP7A	23	77284872	Silent	SNP	G	TCGA-64-5779-01A-01D-1625-08	2765241	77284872	77985688	772	152390											
CHM	1121	broad.mit.edu	37	chrX	85282427	85282427	+	Intron	DEL	T	-	-													tacgtacagacatatatgtgTttatgtaaattttaatcctg							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	85282427	-	-	85282427	6	5	190	0	1	1	0	1	0	0	0	0	3381	1740	60	0		0	CHM	23	85282427	Intron	DEL	T	TCGA-64-5779-01A-01D-1625-08	7997555	85282427	69988133	773	152391											
DACH2	117154	broad.mit.edu	37	chrX	85906179	85906179	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctaacacaggtgagtgtCttccagaatcccagaccaat	7	11	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85906179	A	A	85906179	1	1	190	0	1	0	0	0	0	0	0	0	4254	928	32	3		3	DACH2	23	85906179	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	623752	85906179	69364381	774	152392											
DACH2	117154	broad.mit.edu	37	chrX	85950113	85950113	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaattgctcatgcagccctaGctggccagccaggcattggg	13	12	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85950113	C	C	85950113	3	2	190	1	0	0	0	0	1	0	0	0	4254	971	34	4	880	4	DACH2	23	85950113	Missense_Mutation	SNP	G	TCGA-64-5779-01A-01D-1625-08	43934	85950113	69320447	775	152393											
RPA4	29935	broad.mit.edu	37	chrX	96139656	96139656	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagagagaaagtcaagcaggTgactccattgtcagtcggag	13	7	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96139656	C	C	96139656	3	2	190	1	0	0	0	0	1	0	0	0	13650	1696	59	5	349	5	RPA4	23	96139656	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	10189543	96139656	59130904	776	152394											
DIAPH2	1730	broad.mit.edu	37	chrX	96167533	96167533	+	Missense_Mutation	SNP	A	C	C													aaacttattcaatgcctcaaAgcatttatgaataataaggt							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96167533	C	C	96167533	3	2	190	1	0	0	0	0	1	0	0	0	4559	69	3	5	740	5	DIAPH2	23	96167533	Missense_Mutation	SNP	A	TCGA-64-5779-01A-01D-1625-08	27877	96167533	59103027	777	152395	654	2									
DIAPH2	1730	broad.mit.edu	37	chrX	96167535	96167535	+	Missense_Mutation	SNP	C	T	T													acttattcaatgcctcaaagCatttatgaataataaggtaa							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96167535	T	T	96167535	3	4	190	1	0	0	0	0	1	0	0	0	4559	710	25	4	742	4	DIAPH2	23	96167535	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2	96167535	59103025	778	152396	654	2									
PCDH19	57526	broad.mit.edu	37	chrX	99551651	99551651	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctctcctcagccgggtggTcgctgacatctttcccaaag	10	15	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99551651	A	A	99551651	3	1	190	1	0	0	0	0	1	0	0	0	11608	1667	58	5	379	5	PCDH19	23	99551651	Missense_Mutation	SNP	T	TCGA-64-5779-01A-01D-1625-08	3384116	99551651	55718909	779	152397											
DRP2	1821	broad.mit.edu	37	chrX	100509832	100509832	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttggtcctccgagtcttTgctgctttcttctaggccgg	10	12	4	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100509832	C	C	100509832	1	2	190	0	1	0	0	0	0	0	0	0	4804	1827	63	5		5	DRP2	23	100509832	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	958181	100509832	54760728	780	152398											
KLHL13	90293	broad.mit.edu	37	chrX	117053387	117053387	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaagacacatctgtctaaTggcaagtttcacattcctgc	6	11	3	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117053387	A	A	117053387	1	1	190	0	1	0	0	0	0	0	0	0	8440	1479	51	5		5	KLHL13	23	117053387	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	16543555	117053387	38217173	781	152399											
THOC2	57187	broad.mit.edu	37	chrX	122760216	122760216	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatcagttcctccagtgaaCatgaagttgattctgcatta	7	8	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122760216	T	T	122760216	1	4	190	0	1	0	0	0	0	0	0	0	15988	493	17	4		4	THOC2	23	122760216	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	5706829	122760216	32510344	782	152400											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299259	125299259	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccatccgccacagagccaCggtgccgtcgcgggagccgc	14	17	0	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125299259	T	T	125299259	3	4	190	1	0	0	0	0	1	0	0	0	4298	536	19	4	746	4	DCAF12L2	23	125299259	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08	2539043	125299259	29971301	783	152401											
ARHGEF6	9459	broad.mit.edu	37	chrX	135769996	135769996	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcttatttccattctaaaGacctttgtatagggaaagaa	7	6	1	2			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135769996	C	C	135769996	1	2	190	0	1	0	0	0	0	0	0	0	912	957	33	4		4	ARHGEF6	23	135769996	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	10470737	135769996	19500564	784	152402											
GPR101	83550	broad.mit.edu	37	chrX	136113699	136113699	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcactatgttgccgacgaaAgaggcggcgaggaagataac	14	8	0	2	rs150806941	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136113699	C	C	136113699	2	2	190	1	0	0	0	0	0	0	0	1	6687	59	3	5		5	GPR101	23	136113699	Silent	SNP	A	TCGA-64-5779-01A-01D-1625-08	343703	136113699	19156861	785	152403											
MCF2	4168	broad.mit.edu	37	chrX	138671989	138671989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaagaattttcaaatgaCcaacctggacaatataaact	5	8	1	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138671989	A	A	138671989	1	1	190	0	1	0	0	0	0	0	0	0	9471	522	18	3		3	MCF2	23	138671989	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	2558290	138671989	16598571	786	152404											
UBE2NL	389898	broad.mit.edu	37	chrX	142967514	142967515	+	Missense_Mutation	DNP	AG	TC	TC													ccagccctgcagatccgcacAgttctgctatcgatccaggc							TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	142967515	TC	TC	142967514	3	4	190	1	0	0	0	0	1	0	0	0	16993	175	7	5	314	5	UBE2NL	23	142967514	Missense_Mutation	DNP	AG	TCGA-64-5779-01A-01D-1625-08	4295525	142967514	12303046	787	152405											
CNGA2	1260	broad.mit.edu	37	chrX	150906832	150906832	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgaggttggccaggtgGgcctgggttctaatccatcc	15	10	1	1			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150906832	T	T	150906832	1	4	190	0	1	0	0	0	0	0	0	0	3629	1247	43	2		2	CNGA2	23	150906832	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	7939318	150906832	4363728	788	152406											
GABRE	2564	broad.mit.edu	37	chrX	151128485	151128485	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagggtcttatgagacTtggaagcccacctgaggtct	13	8	2	3			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151128485	G	G	151128485	1	3	190	0	1	0	0	0	0	0	0	0	6230	1624	56	5		5	GABRE	23	151128485	Intron	SNP	T	TCGA-64-5779-01A-01D-1625-08	221653	151128485	4142075	789	152407											
IDH3G	3421	broad.mit.edu	37	chrX	153051458	153051458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcaggctcggcacacaCcaggccctgccaccccccgc	10	21	0	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153051458	A	A	153051458	1	1	190	0	1	0	0	0	0	0	0	0	7568	522	18	3		3	IDH3G	23	153051458	Intron	SNP	C	TCGA-64-5779-01A-01D-1625-08	1922973	153051458	2219102	790	152408											
PLXNA3	55558	broad.mit.edu	37	chrX	153692733	153692733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagttcacggccaccccgGgactgctgcaggggccaccc	14	17	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153692733	T	T	153692733	1	4	190	0	1	0	0	0	0	0	0	0	12216	1247	43	2		2	PLXNA3	23	153692733	Intron	SNP	G	TCGA-64-5779-01A-01D-1625-08	641275	153692733	1577827	791	152409											
NLGN4Y	22829	broad.mit.edu	37	chrY	16942192	16942192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgcacgcgcagtacggctCccccacctacttctatgcct	7	19	1	0			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16942192	A	A	16942192	3	1	190	1	0	0	0	0	1	0	0	0	10560	855	30	3	1562	3	NLGN4Y	24	16942192	Missense_Mutation	SNP	C	TCGA-64-5779-01A-01D-1625-08		16942192	42431374	792	152410											
KLHL17	339451	broad.mit.edu	37	chr1	897302	897302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgacccctccaactgcctgGgtatccggggctttgccgat	11	15	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	897302	T	T	897302	3	4	191	1	0	0	0	0	1	0	0	0	8443	1232	43	2	600	2	KLHL17	1	897302	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08		897302	248353319	1	152411											
AGRN	375790	broad.mit.edu	37	chr1	957543	957543	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtctagccccttccccagGagaggactaatgacacctac	8	15	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	957543	T	T	957543	1	4	191	0	1	0	0	0	0	0	0	0	397	1189	41	3		3	AGRN	1	957543	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	60241	957543	248293078	2	152412											
AGRN	375790	broad.mit.edu	37	chr1	970603	970603	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggctgggcaaagggatggGacagggaggagcctgctcag	19	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	970603	T	T	970603	1	4	191	0	1	0	0	0	0	0	0	0	397	1189	41	3		3	AGRN	1	970603	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	13060	970603	248280018	3	152413											
AGRN	375790	broad.mit.edu	37	chr1	979000	979000	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgaatgcgtggctttGgcccagcccgtgtgtggctc	13	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	979000	A	A	979000	2	1	191	1	0	0	0	0	0	0	0	1	397	1339	47	4		4	AGRN	1	979000	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	8397	979000	248271621	4	152414											
SCNN1D	6339	broad.mit.edu	37	chr1	1225810	1225811	+	Intron	INS	-	G	G													cactctgtcagccattagccINSggggggtcacagcgagcctc					rs148154742	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1225811	G	G	1225810	6	5	191	0	1	1	1	0	0	0	0	0	14042	667	23	0		0	SCNN1D	1	1225810	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	246810	1225810	248024811	5	152415											
TAS1R3	83756	broad.mit.edu	37	chr1	1268367	1268367	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgcggttcgacagcagcGgaaacgtggacatggagtac	15	10	0	0	rs143311630	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1268367	T	T	1268367	4	4	191	1	0	0	0	0	0	1	0	0	15683	1117	39	1	1356	1	TAS1R3	1	1268367	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	42557	1268367	247982254	6	152416											
SKI	6497	broad.mit.edu	37	chr1	2234312	2234312	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactcagggtcgtttgtgGccggagtgcatggggctctg	17	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2234312	T	T	2234312	1	4	191	0	1	0	0	0	0	0	0	0	14470	1218	42	3		3	SKI	1	2234312	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	965945	2234312	247016309	7	152417											
MMEL1	79258	broad.mit.edu	37	chr1	2535801	2535801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctgtgggggtggggtggGcgtaggacatggggaagccc	21	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2535801	T	T	2535801	1	4	191	0	1	0	0	0	0	0	0	0	9739	1218	42	3		3	MMEL1	1	2535801	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	301489	2535801	246714820	8	152418											
ACTRT2	140625	broad.mit.edu	37	chr1	2939307	2939307	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatcgtcacctctctgagtAgcttcaagcagatgtgggtc	10	12	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2939307	T	T	2939307	3	4	191	1	0	0	0	0	1	0	0	0	219	420	15	5	1059	5	ACTRT2	1	2939307	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	403506	2939307	246311314	9	152419											
AJAP1	55966	broad.mit.edu	37	chr1	4772150	4772150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtggacagccagcgcggGtcccggccccggtgtggagc	19	13	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4772150	T	T	4772150	3	4	191	1	0	0	0	0	1	0	0	0	438	1261	44	3	226	3	AJAP1	1	4772150	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1832843	4772150	244478471	10	152420											
CAMTA1	23261	broad.mit.edu	37	chr1	7737720	7737720	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagatcatctccaactcGgtggtgtttgagtacaaagc	9	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7737720	T	T	7737720	2	4	191	1	0	0	0	0	0	0	0	1	2639	1103	39	1		1	CAMTA1	1	7737720	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2965570	7737720	241512901	11	152421											
SLC45A1	50651	broad.mit.edu	37	chr1	8397904	8397904	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattcgaggggatgttgctCttctacacagacttcatggg	11	9	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8397904	T	T	8397904	2	4	191	1	0	0	0	0	0	0	0	1	14754	900	32	4		4	SLC45A1	1	8397904	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	660184	8397904	240852717	12	152422											
UBE4B	10277	broad.mit.edu	37	chr1	10207066	10207066	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgatgctggcctacttgacGagagcttcctgagaagatgt	12	9	0	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10207066	T	T	10207066	4	4	191	1	0	0	0	0	0	1	0	0	17009	1059	37	3	2583	3	UBE4B	1	10207066	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1809162	10207066	239043555	13	152423											
MTOR	2475	broad.mit.edu	37	chr1	11264722	11264722	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgtctcagccattccagCcagtcatctttggagaccct	8	15	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11264722	A	A	11264722	3	1	191	1	0	0	0	0	1	0	0	0	10048	740	26	3	3941	3	MTOR	1	11264722	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1057656	11264722	237985899	14	152424											
PTCHD2	57540	broad.mit.edu	37	chr1	11574630	11574630	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctcccctcccagggtgctCctgtctgcccagagcctgcc	9	20	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11574630	T	T	11574630	1	4	191	0	1	0	0	0	0	0	0	0	12839	870	30	4		4	PTCHD2	1	11574630	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	309908	11574630	237675991	15	152425											
PTCHD2	57540	broad.mit.edu	37	chr1	11579514	11579514	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccagggccccataccCtacctggatgatgacatccc	8	18	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11579514	A	A	11579514	2	1	191	1	0	0	0	0	0	0	0	1	12839	668	24	2		2	PTCHD2	1	11579514	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	4884	11579514	237671107	16	152426											
MAD2L2	10459	broad.mit.edu	37	chr1	11735035	11735035	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggagccctccaccaggcaCtcccccgttctctcccgcaa	8	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11735035	G	G	11735035	1	3	191	0	1	0	0	0	0	0	0	0	9238	580	20	4		4	MAD2L2	1	11735035	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	155521	11735035	237515586	17	152427											
TNFRSF8	943	broad.mit.edu	37	chr1	12164553	12164553	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcccgctgcttcttccattCtgtctgtccggcagggatga	11	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12164553	T	T	12164553	3	4	191	1	0	0	0	0	1	0	0	0	16422	913	32	4	400	4	TNFRSF8	1	12164553	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	429518	12164553	237086068	18	152428											
PRAMEF4	400735	broad.mit.edu	37	chr1	12942121	12942121	+	Frame_Shift_Del	DEL	C	-	-													gtcaagggctgccgtcctctCatccttggacagtcctccac							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12942121	-	-	12942121	7	5	191	1	0	1	0	1	0	0	0	0	12541	826	29	0	1015	0	PRAMEF4	1	12942121	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	777568	12942121	236308500	19	152429											
LOC440563	440563	broad.mit.edu	37	chr1	13183308	13183308	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atccactttctgttttatctGggtcaactcctgcttaatgg	7	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13183308	C	C	13183308	3	2	191	1	0	0	0	0	1	0	0	0	8962	1357	47	4	320	4	LOC440563	1	13183308	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	241187	13183308	236067313	20	152430											
KAZ	23254	broad.mit.edu	37	chr1	15430447	15430447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggggacagagccccacGtggaactggggcccccttag	15	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15430447	T	T	15430447	1	4	191	0	1	0	0	0	0	0	0	0	8058	1160	40	3		3	KAZ	1	15430447	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2247139	15430447	233820174	21	152431											
CTRC	11330	broad.mit.edu	37	chr1	15770036	15770036	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgctatgtcaccggctGgggccgcctctggagtgagt	14	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15770036	A	A	15770036	4	1	191	1	0	0	0	0	0	1	0	0	4061	1357	47	4	497	4	CTRC	1	15770036	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	339589	15770036	233480585	22	152432											
CLCNKA	1187	broad.mit.edu	37	chr1	16356931	16356931	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgcctcctggcctgagccGacctgtgtggctctgccccg	12	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16356931	A	A	16356931	1	1	191	0	1	0	0	0	0	0	0	0	3500	1073	37	4		4	CLCNKA	1	16356931	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	586895	16356931	232893690	23	152433											
NBPF1	55672	broad.mit.edu	37	chr1	16892336	16892336	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtaaagaataagccaggGggaatcagaaaccacacagc	10	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16892336	A	A	16892336	1	1	191	0	1	0	0	0	0	0	0	0	10286	1247	43	4		4	NBPF1	1	16892336	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	535405	16892336	232358285	24	152434											
NBPF1	55672	broad.mit.edu	37	chr1	16893052	16893052	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcagggacttcaggctcctCagcatgagaataggacactg	12	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16893052	A	A	16893052	1	1	191	0	1	0	0	0	0	0	0	0	10286	841	29	3		3	NBPF1	1	16893052	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	716	16893052	232357569	25	152435											
IGSF21	84966	broad.mit.edu	37	chr1	18661461	18661461	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacgaccgcgccaccagggaGaaggtggtcctggcatcagg	15	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18661461	C	C	18661461	3	2	191	1	0	0	0	0	1	0	0	0	7669	933	33	4	395	4	IGSF21	1	18661461	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1768409	18661461	230589160	26	152436											
KLHDC7A	127707	broad.mit.edu	37	chr1	18808309	18808309	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcatttcatacagaaggcGgagggggttgagccccggct	16	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18808309	T	T	18808309	2	4	191	1	0	0	0	0	0	0	0	1	8431	1103	39	1		1	KLHDC7A	1	18808309	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	146848	18808309	230442312	27	152437											
TAS1R2	80834	broad.mit.edu	37	chr1	19166166	19166166	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgcgctccgggtagaagAggatcatgtagcacttgggg	16	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19166166	G	G	19166166	3	3	191	1	0	0	0	0	1	0	0	0	15682	304	11	5	76	5	TAS1R2	1	19166166	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	357857	19166166	230084455	28	152438											
UBR4	23352	broad.mit.edu	37	chr1	19486754	19486754	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attaagcatgtctaacacgaGaggagcgaaggagaaattgg	13	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19486754	C	C	19486754	3	2	191	1	0	0	0	0	1	0	0	0	17030	942	33	4	10395	4	UBR4	1	19486754	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	320588	19486754	229763867	29	152439											
UBR4	23352	broad.mit.edu	37	chr1	19513693	19513693	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagtaacgtcaagagcaGgttcatcagtgggacagagt	13	6	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19513693	A	A	19513693	2	1	191	1	0	0	0	0	0	0	0	1	17030	991	35	4		4	UBR4	1	19513693	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	26939	19513693	229736928	30	152440											
HTR6	3362	broad.mit.edu	37	chr1	19992446	19992446	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccaacttcttcctggtgtCgctcttcacgtctgacctga	8	14	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19992446	T	T	19992446	3	4	191	1	0	0	0	0	1	0	0	0	7521	893	31	4	202	4	HTR6	1	19992446	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	478753	19992446	229258175	31	152441											
CAMK2N1	55450	broad.mit.edu	37	chr1	20810239	20810239	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggggggaaaagagagGtgagcgcgctggggcctagc	19	6	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20810239	A	A	20810239	1	1	191	0	1	0	0	0	0	0	0	0	2629	1276	44	4		4	CAMK2N1	1	20810239	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	817793	20810239	228440382	32	152442											
HP1BP3	50809	broad.mit.edu	37	chr1	21071429	21071429	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggatgagggtctggtcTtcttggcaggcgttttggcc	16	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21071429	A	A	21071429	3	1	191	1	0	0	0	0	1	0	0	0	7395	1609	56	5	142	5	HP1BP3	1	21071429	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	261190	21071429	228179192	33	152443											
USP48	84196	broad.mit.edu	37	chr1	22078012	22078012	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaataccttcaaaaattcCgagatacaatctgttaactg	5	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22078012	A	A	22078012	2	1	191	1	0	0	0	0	0	0	0	1	17206	639	23	1		1	USP48	1	22078012	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1006583	22078012	227172609	34	152444											
LDLRAD2	401944	broad.mit.edu	37	chr1	22142456	22142456	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccttgtggtgcctacttcCgctgccagaatggcaggtgc	13	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22142456	G	G	22142456	3	3	191	1	0	0	0	0	1	0	0	0	8778	652	23	4	542	4	LDLRAD2	1	22142456	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	64444	22142456	227108165	35	152445											
CELA3B	23436	broad.mit.edu	37	chr1	22310860	22310860	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcccgaggtggtgctggGtgtgcaggaccttggaatgg	18	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22310860	T	T	22310860	1	4	191	0	1	0	0	0	0	0	0	0	3244	1276	44	3		3	CELA3B	1	22310860	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	168404	22310860	226939761	36	152446											
C1QC	714	broad.mit.edu	37	chr1	22973864	22973864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatccctggagagccagGtgaggagggcagatacaagc	17	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22973864	T	T	22973864	3	4	191	1	0	0	0	0	1	0	0	0	1977	1261	44	3	332	3	C1QC	1	22973864	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	663004	22973864	226276757	37	152447											
RUNX3	864	broad.mit.edu	37	chr1	25229066	25229066	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgggataatgcatcctgggGtctgggaagcggctctccgt	15	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25229066	C	C	25229066	3	2	191	1	0	0	0	0	1	0	0	0	13860	1252	44	4	456	4	RUNX3	1	25229066	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2255202	25229066	224021555	38	152448											
RHD	6007	broad.mit.edu	37	chr1	25599284	25599284	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacagatgttcctttctacAaaatcccaaggaaaaagatt	6	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25599284	T	T	25599284	1	4	191	0	1	0	0	0	0	0	0	0	13436	145	5	5		5	RHD	1	25599284	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	370218	25599284	223651337	39	152449											
SEPN1	57190	broad.mit.edu	37	chr1	26140371	26140371	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttctgtcttcctgaacaGgttcagggcggactctccgg	11	14	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26140371	T	T	26140371	5	4	191	1	0	0	0	0	0	0	1	0	14169	1014	35	2	1429	2	SEPN1	1	26140371	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	541087	26140371	223110250	40	152450											
CNKSR1	10256	broad.mit.edu	37	chr1	26509049	26509049	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggaacagaaggccgtgctcGagcaggtgcagctggacagt	16	9	0	1	rs140239583	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26509049	A	A	26509049	3	1	191	1	0	0	0	0	1	0	0	0	3638	1059	37	4	620	4	CNKSR1	1	26509049	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	368678	26509049	222741572	41	152451											
PIGV	55650	broad.mit.edu	37	chr1	27120928	27120928	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttggctgcagttgcacttCatgacctgggttgtctggtt	13	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27120928	T	T	27120928	3	4	191	1	0	0	0	0	1	0	0	0	11996	826	29	4	409	4	PIGV	1	27120928	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	611879	27120928	222129693	42	152452											
SLC9A1	6548	broad.mit.edu	37	chr1	27432341	27432341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacagcctgtgagggtccCcaaggcaagggcctgccctg	15	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27432341	A	A	27432341	1	1	191	0	1	0	0	0	0	0	0	0	14823	638	22	2		2	SLC9A1	1	27432341	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	311413	27432341	221818280	43	152453											
WDTC1	23038	broad.mit.edu	37	chr1	27618560	27618560	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcacactgtggacactcaaGaaatgggagttgtttttgac	12	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27618560	C	C	27618560	1	2	191	0	1	0	0	0	0	0	0	0	17469	957	33	4		4	WDTC1	1	27618560	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	186219	27618560	221632061	44	152454											
MATN1	4146	broad.mit.edu	37	chr1	31188733	31188733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccatcagtggtgtccaGggtccaggcaggcaacacct	13	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31188733	T	T	31188733	1	4	191	0	1	0	0	0	0	0	0	0	9425	1015	35	2		2	MATN1	1	31188733	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3570173	31188733	218061888	45	152455											
MATN1	4146	broad.mit.edu	37	chr1	31189605	31189605	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcacctcccctccacaccctCtccagggcgagcctgtgtcc	7	21	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31189605	A	A	31189605	1	1	191	0	1	0	0	0	0	0	0	0	9425	928	32	3		3	MATN1	1	31189605	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	872	31189605	218061016	46	152456											
MATN1	4146	broad.mit.edu	37	chr1	31194163	31194163	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccacctcacggggcatcAtgggaatcaaagtgtctgca	12	11	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31194163	T	T	31194163	1	4	191	0	1	0	0	0	0	0	0	0	9425	232	8	5		5	MATN1	1	31194163	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	4558	31194163	218056458	47	152457											
CCDC28B	79140	broad.mit.edu	37	chr1	32669671	32669671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgggggctggtttcagCgggtgtgtggatagggctgt	20	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32669671	A	A	32669671	1	1	191	0	1	0	0	0	0	0	0	0	2830	783	27	3		3	CCDC28B	1	32669671	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1475508	32669671	216580950	48	152458											
TSSK3	81629	broad.mit.edu	37	chr1	32829695	32829695	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttttgacgacacagacatCcccaagatgctgtggcagca	9	13	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32829695	T	T	32829695	2	4	191	1	0	0	0	0	0	0	0	1	16795	845	30	4		4	TSSK3	1	32829695	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	160024	32829695	216420926	49	152459											
BSDC1	55108	broad.mit.edu	37	chr1	32843761	32843761	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctttcttctctcaataaatCcagcctgcttcccccagggt	5	16	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32843761	A	A	32843761	1	1	191	0	1	0	0	0	0	0	0	0	1537	870	30	3		3	BSDC1	1	32843761	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	14066	32843761	216406860	50	152460											
KIAA1522	57648	broad.mit.edu	37	chr1	33236143	33236143	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaatagcgtggtaccccctCcccagggaggcagtgggagg	16	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33236143	A	A	33236143	3	1	191	1	0	0	0	0	1	0	0	0	8308	855	30	3	1385	3	KIAA1522	1	33236143	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	392382	33236143	216014478	51	152461											
CSMD2	114784	broad.mit.edu	37	chr1	34190095	34190095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagtctgctactttagcGccccctcatggtgtccctca	10	14	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34190095	T	T	34190095	1	4	191	0	1	0	0	0	0	0	0	0	3979	1102	38	3		3	CSMD2	1	34190095	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	953952	34190095	215060526	52	152462											
EIF2C1	26523	broad.mit.edu	37	chr1	36380996	36380996	+	Frame_Shift_Del	DEL	G	-	-													agccgatactgtgctactgtGcgggtacagcgaccacggca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36380996	-	-	36380996	7	5	191	1	0	1	0	1	0	0	0	0	5045	1306	46	0	1939	0	EIF2C1	1	36380996	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	2190901	36380996	212869625	53	152463											
RSPO1	284654	broad.mit.edu	37	chr1	38078700	38078700	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaagccggaaggggaggcAgggaggaggctggagatgct	22	5	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38078700	T	T	38078700	1	4	191	0	1	0	0	0	0	0	0	0	13820	203	7	5		5	RSPO1	1	38078700	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1697704	38078700	211171921	54	152464											
RSPO1	284654	broad.mit.edu	37	chr1	38095354	38095354	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcacgcgccagctccaggCccctggtcggaggggtggtc	16	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38095354	A	A	38095354	1	1	191	0	1	0	0	0	0	0	0	0	13820	754	26	3		3	RSPO1	1	38095354	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	16654	38095354	211155267	55	152465											
INPP5B	3633	broad.mit.edu	37	chr1	38409347	38409347	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccatctggggacactgtgGggagggaaatgagaatgccc	15	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38409347	C	C	38409347	1	2	191	0	1	0	0	0	0	0	0	0	7825	1247	43	4		4	INPP5B	1	38409347	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	313993	38409347	210841274	56	152466											
PPIE	10450	broad.mit.edu	37	chr1	40211188	40211188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgagcaggacgctgtgGtcagaacggcgggacgctgg	19	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40211188	T	T	40211188	1	4	191	0	1	0	0	0	0	0	0	0	12423	1276	44	3		3	PPIE	1	40211188	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1801841	40211188	209039433	57	152467											
TRIT1	54802	broad.mit.edu	37	chr1	40313476	40313476	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattctctgaaattttcccCtcccctacccaccaggttac	4	16	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40313476	T	T	40313476	1	4	191	0	1	0	0	0	0	0	0	0	16685	696	24	4		4	TRIT1	1	40313476	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	102288	40313476	208937145	58	152468											
RLF	6018	broad.mit.edu	37	chr1	40701547	40701547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagatgaggaaatgaaGgcatcagtttgtaaaacaat	11	3	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40701547	T	T	40701547	3	4	191	1	0	0	0	0	1	0	0	0	13500	991	35	2	1203	2	RLF	1	40701547	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	388071	40701547	208549074	59	152469											
ZNF684	127396	broad.mit.edu	37	chr1	41006196	41006196	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatattaaggagctgccttGattctcttgcaagttcgcta	9	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41006196	C	C	41006196	1	2	191	0	1	0	0	0	0	0	0	0	18218	1305	45	4		4	ZNF684	1	41006196	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	304649	41006196	208244425	60	152470											
HIVEP3	59269	broad.mit.edu	37	chr1	42047512	42047512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggctgacctccgcatctctCgggcatgtgggtggtggctg	16	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42047512	A	A	42047512	3	1	191	1	0	0	0	0	1	0	0	0	7255	884	31	3	4287	3	HIVEP3	1	42047512	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1041316	42047512	207203109	61	152471											
EBNA1BP2	10969	broad.mit.edu	37	chr1	43637772	43637772	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gattccgactccgaatccgaGagcgggggagtgtccatctc	13	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43637772	A	A	43637772	2	1	191	1	0	0	0	0	0	0	0	1	4925	929	33	4		4	EBNA1BP2	1	43637772	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1590260	43637772	205612849	62	152472											
SLC6A9	6536	broad.mit.edu	37	chr1	44467346	44467346	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccctctccccaatttggGccaagaggagacatggagac	10	13	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44467346	A	A	44467346	1	1	191	0	1	0	0	0	0	0	0	0	14805	1218	42	4		4	SLC6A9	1	44467346	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	829574	44467346	204783275	63	152473											
MKNK1	8569	broad.mit.edu	37	chr1	47025965	47025965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgctagaatgggaaggaCagatgtgtaggtaaagcact	14	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47025965	A	A	47025965	1	1	191	0	1	0	0	0	0	0	0	0	9697	493	17	3		3	MKNK1	1	47025965	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2558619	47025965	202224656	64	152474											
CYP4B1	1580	broad.mit.edu	37	chr1	47283692	47283692	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaacagtgctgtatggccCgaccctgaggtaccctttcc	11	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47283692	G	G	47283692	2	3	191	1	0	0	0	0	0	0	0	1	4218	639	23	4		4	CYP4B1	1	47283692	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	257727	47283692	201966929	65	152475											
TAL1	6886	broad.mit.edu	37	chr1	47685674	47685674	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattgagcagcttggccaaGaagttgatatacttcatggc	10	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47685674	T	T	47685674	3	4	191	1	0	0	0	0	1	0	0	0	15660	933	33	3	285	3	TAL1	1	47685674	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	401982	47685674	201564947	66	152476											
KTI12	112970	broad.mit.edu	37	chr1	52498521	52498521	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgggtaaaccgcaagtgctCtgtggtaccaggaagcgtga	14	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52498521	A	A	52498521	4	1	191	1	0	0	0	0	0	1	0	0	8656	922	32	3	155	3	KTI12	1	52498521	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4812847	52498521	196752100	67	152477											
ZCCHC11	23318	broad.mit.edu	37	chr1	52923946	52923946	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgacatgaaccaagcaaaatCtcctgtgtttagatctattg	7	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52923946	A	A	52923946	1	1	191	0	1	0	0	0	0	0	0	0	17706	928	32	3		3	ZCCHC11	1	52923946	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	425425	52923946	196326675	68	152478											
PODN	127435	broad.mit.edu	37	chr1	53543269	53543269	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccttcctggtggcttcCcagactcctctccacacctc	8	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53543269	A	A	53543269	1	1	191	0	1	0	0	0	0	0	0	0	12273	638	22	2		2	PODN	1	53543269	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	619323	53543269	195707352	69	152479											
C1orf175	374977	broad.mit.edu	37	chr1	55148376	55148376	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatactgtgtaagcccagctGtgatgtccgagacctcctgg	12	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55148376	C	C	55148376	3	2	191	1	0	0	0	0	1	0	0	0	2036	1377	48	4	2475	4	C1orf175	1	55148376	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1605107	55148376	194102245	70	152480											
DHCR24	1718	broad.mit.edu	37	chr1	55319740	55319740	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttggaaggtgtgcagggcCtgctgcaggcacttcatggg	16	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55319740	G	G	55319740	3	3	191	1	0	0	0	0	1	0	0	0	4516	680	24	4	374	4	DHCR24	1	55319740	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	171364	55319740	193930881	71	152481											
PRKAA2	5563	broad.mit.edu	37	chr1	57158189	57158189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttcggtatgtaactccaGggttgttcagaaaggtacta	11	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57158189	T	T	57158189	1	4	191	0	1	0	0	0	0	0	0	0	12600	1015	35	2		2	PRKAA2	1	57158189	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1838449	57158189	192092432	72	152482											
HOOK1	51361	broad.mit.edu	37	chr1	60312696	60312696	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatggaagttataaatacTtacttttttatttgttcaag	5	4	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60312696	G	G	60312696	1	3	191	0	1	0	0	0	0	0	0	0	7349	1624	56	5		5	HOOK1	1	60312696	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	3154507	60312696	188937925	73	152483											
INADL	10207	broad.mit.edu	37	chr1	62293239	62293239	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaaggcgcactgaaacctCtcttcctgagacagaggtac	9	13	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62293239	G	G	62293239	3	3	191	1	0	0	0	0	1	0	0	0	7801	913	32	4	2022	4	INADL	1	62293239	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1980543	62293239	186957382	74	152484											
INADL	10207	broad.mit.edu	37	chr1	62545357	62545357	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgactctggatacttcctCcgcttccttagctttggggc	9	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62545357	T	T	62545357	1	4	191	0	1	0	0	0	0	0	0	0	7801	870	30	4		4	INADL	1	62545357	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	252118	62545357	186705264	75	152485											
INADL	10207	broad.mit.edu	37	chr1	62582973	62582973	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttaataaatggttgtttgGaaataatatctaatgtacag	7	2	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62582973	A	A	62582973	1	1	191	0	1	0	0	0	0	0	0	0	7801	1189	41	4		4	INADL	1	62582973	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	37616	62582973	186667648	76	152486											
EFCAB7	84455	broad.mit.edu	37	chr1	63999713	63999713	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcactgtgtttggaaaaaacTcctattgacaacttttcata	6	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63999713	A	A	63999713	1	1	191	0	1	0	0	0	0	0	0	0	4980	1566	54	5		5	EFCAB7	1	63999713	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1416740	63999713	185250908	77	152487											
ROR1	4919	broad.mit.edu	37	chr1	64515413	64515413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacatcaccacgtctctgGgccagacagcagaactgcac	8	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64515413	T	T	64515413	3	4	191	1	0	0	0	0	1	0	0	0	13637	1232	43	2	224	2	ROR1	1	64515413	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	515700	64515413	184735208	78	152488											
CACHD1	57685	broad.mit.edu	37	chr1	65120489	65120489	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctatgcctggaagatggtGagtgagaggaagttgtgttt	16	3	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65120489	T	T	65120489	1	4	191	0	1	0	0	0	0	0	0	0	2563	1305	45	3		3	CACHD1	1	65120489	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	605076	65120489	184130132	79	152489											
LEPR	3953	broad.mit.edu	37	chr1	66042633	66042633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatactgtctgttcctGgcaaacaatcctccagccat	7	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66042633	T	T	66042633	1	4	191	0	1	0	0	0	0	0	0	0	8800	1363	47	2		2	LEPR	1	66042633	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	922144	66042633	183207988	80	152490											
LEPR	3953	broad.mit.edu	37	chr1	66088698	66088698	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttaacccagaatatAtacgattgcaatctagacgc	5	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66088698	G	G	66088698	1	3	191	0	1	0	0	0	0	0	0	0	8800	464	16	5		5	LEPR	1	66088698	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	46065	66088698	183161923	81	152491											
IL12RB2	3595	broad.mit.edu	37	chr1	67861345	67861345	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccccagttttcagacatcCcccctgctccaactggccac	6	19	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67861345	G	G	67861345	3	3	191	1	0	0	0	0	1	0	0	0	7697	623	22	4	2220	4	IL12RB2	1	67861345	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1772647	67861345	181389276	82	152492											
LRRC7	57554	broad.mit.edu	37	chr1	70541879	70541879	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaatttcagtcaccattGcctattcagatcccctcttc	4	15	4	1	rs143842567		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70541879	T	T	70541879	3	4	191	1	0	0	0	0	1	0	0	0	9107	1310	46	3	4322	3	LRRC7	1	70541879	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2680534	70541879	178708742	83	152493											
LRRIQ3	127255	broad.mit.edu	37	chr1	74575280	74575280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatttgttagttttttgcCattaaaaaacatgaaaatta	4	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74575280	A	A	74575280	1	1	191	0	1	0	0	0	0	0	0	0	9117	609	21	2		2	LRRIQ3	1	74575280	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4033401	74575280	174675341	84	152494											
TNNI3K	51086	broad.mit.edu	37	chr1	74701175	74701175	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaacccaaacttgtactGgtaattattctaattattct	4	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74701175	T	T	74701175	3	4	191	1	0	0	0	0	1	0	0	0	16452	1362	47	2	397	2	TNNI3K	1	74701175	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	125895	74701175	174549446	85	152495											
TNNI3K	51086	broad.mit.edu	37	chr1	74957690	74957690	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaattaaaatatgggaaacCttggaatagaaagttaaatc	8	3	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74957690	T	T	74957690	1	4	191	0	1	0	0	0	0	0	0	0	16452	696	24	4		4	TNNI3K	1	74957690	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	256515	74957690	174292931	86	152496											
C1orf173	127254	broad.mit.edu	37	chr1	75036735	75036735	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaaggggaggagacccaCcgcagggctgctatttagtc	13	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75036735	A	A	75036735	1	1	191	0	1	0	0	0	0	0	0	0	2034	522	18	3		3	C1orf173	1	75036735	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	79045	75036735	174213886	87	152497											
C1orf173	127254	broad.mit.edu	37	chr1	75037806	75037806	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctattctccctgctggaCagctcttctctgtctttgtg	8	14	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75037806	G	G	75037806	2	3	191	1	0	0	0	0	0	0	0	1	2034	465	17	4		4	C1orf173	1	75037806	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1071	75037806	174212815	88	152498											
C1orf173	127254	broad.mit.edu	37	chr1	75072430	75072430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctgaaacagaggttttGttctccttgatctcatttct	8	8	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75072430	T	T	75072430	3	4	191	1	0	0	0	0	1	0	0	0	2034	1368	48	3	3268	3	C1orf173	1	75072430	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	34624	75072430	174178191	89	152499											
CRYZ	1429	broad.mit.edu	37	chr1	75180340	75180340	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggaaagcataagttacatCaccttattttttgaagctaa	6	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75180340	T	T	75180340	1	4	191	0	1	0	0	0	0	0	0	0	3954	841	29	4		4	CRYZ	1	75180340	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	107910	75180340	174070281	90	152500											
TYW3	127253	broad.mit.edu	37	chr1	75229748	75229748	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaacttgaaaatgatgAtgatgatgatctaggaatca	10	3	2	8			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75229748	T	T	75229748	3	4	191	1	0	0	0	0	1	0	0	0	16946	333	12	5	753	5	TYW3	1	75229748	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	49408	75229748	174020873	91	152501											
LHX8	431707	broad.mit.edu	37	chr1	75596372	75596372	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtcccaaggtgagcccgTatacagctctgccatctctg	9	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75596372	C	C	75596372	1	2	191	0	1	0	0	0	0	0	0	0	8848	1653	57	5		5	LHX8	1	75596372	5'UTR	SNP	T	TCGA-64-5781-01A-01D-1625-08	366624	75596372	173654249	92	152502											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76779596	76779596	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctactaaactgctttggacAacctggtacaaagtggatac	9	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76779596	T	T	76779596	3	4	191	1	0	0	0	0	1	0	0	0	15343	130	5	5	131	5	ST6GALNAC3	1	76779596	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1183224	76779596	172471025	93	152503											
ELTD1	64123	broad.mit.edu	37	chr1	79470928	79470928	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aataaaatagagaaatacacCttttcaaaaagtaaaacaaa	3	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79470928	G	G	79470928	1	3	191	0	1	0	0	0	0	0	0	0	5126	696	24	4		4	ELTD1	1	79470928	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2691332	79470928	169779693	94	152504											
LPHN2	23266	broad.mit.edu	37	chr1	82416772	82416772	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccccgatcttagcaactgTacctcacactgggtgaatca	9	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82416772	C	C	82416772	2	2	191	1	0	0	0	0	0	0	0	1	9003	1644	57	5		5	LPHN2	1	82416772	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	2945844	82416772	166833849	95	152505											
LPHN2	23266	broad.mit.edu	37	chr1	82418681	82418681	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacttaaaagctccaaaaacGagagaagacatgcagggctt	9	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82418681	T	T	82418681	1	4	191	0	1	0	0	0	0	0	0	0	9003	1073	37	3		3	LPHN2	1	82418681	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1909	82418681	166831940	96	152506											
TTLL7	79739	broad.mit.edu	37	chr1	84394841	84394841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtttagtagcttcaacgCatttagcagcactccccttt	6	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84394841	A	A	84394841	3	1	191	1	0	0	0	0	1	0	0	0	16858	710	25	3	1591	3	TTLL7	1	84394841	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1976160	84394841	164855780	97	152507											
LPAR3	23566	broad.mit.edu	37	chr1	85331308	85331308	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcagaggcaattccagcCcagtgtggggaccgccccca	13	14	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85331308	A	A	85331308	3	1	191	1	0	0	0	0	1	0	0	0	8993	623	22	2	573	2	LPAR3	1	85331308	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	936467	85331308	163919313	98	152508											
SYDE2	84144	broad.mit.edu	37	chr1	85648917	85648917	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaatacgttataaagCaatatgttttgatttctttt	5	3	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85648917	T	T	85648917	1	4	191	0	1	0	0	0	0	0	0	0	15555	725	25	4		4	SYDE2	1	85648917	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	317609	85648917	163601704	99	152509											
COL24A1	255631	broad.mit.edu	37	chr1	86591549	86591549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccattgctcatcatgaacaCtgtagttgaaaactgcaggc	9	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86591549	A	A	86591549	3	1	191	1	0	0	0	0	1	0	0	0	3715	565	20	3	4906	3	COL24A1	1	86591549	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	942632	86591549	162659072	100	152510											
COL24A1	255631	broad.mit.edu	37	chr1	86621922	86621922	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctaaagccaaaaagtgCcaaggagccggacttcagat	10	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86621922	A	A	86621922	1	1	191	0	1	0	0	0	0	0	0	0	3715	754	26	3		3	COL24A1	1	86621922	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	30373	86621922	162628699	101	152511											
COL24A1	255631	broad.mit.edu	37	chr1	86622021	86622022	+	Intron	INS	-	A	A													acccggcgggtgggctacttINSacgtttttgccgtgggggag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86622022	A	A	86622021	6	5	191	0	1	1	1	0	0	0	0	0	3715	1769	61	0		0	COL24A1	1	86622021	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	99	86622021	162628600	102	152512											
GBP4	115361	broad.mit.edu	37	chr1	89655791	89655791	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagactgcaatggcttccCtctcacaggctgcatgcacg	10	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89655791	T	T	89655791	3	4	191	1	0	0	0	0	1	0	0	0	6338	681	24	4	815	4	GBP4	1	89655791	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3033770	89655791	159594830	103	152513											
CDC7	8317	broad.mit.edu	37	chr1	91989846	91989846	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgtgagcattgttttgatGagtataataccaatttagaa	9	4	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91989846	A	A	91989846	3	1	191	1	0	0	0	0	1	0	0	0	3114	1291	45	4	1621	4	CDC7	1	91989846	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2334055	91989846	157260775	104	152514											
BTBD8	284697	broad.mit.edu	37	chr1	92554427	92554427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgtggagaatgttgaaGctttagaatttagaacgttt	11	3	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92554427	C	C	92554427	3	2	191	1	0	0	0	0	1	0	0	0	1557	971	34	4	328	4	BTBD8	1	92554427	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	564581	92554427	156696194	105	152515											
DNTTIP2	30836	broad.mit.edu	37	chr1	94341979	94341979	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttgtcttcctcttccaaGtaaaaatttttatcagcact	4	11	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94341979	A	A	94341979	2	1	191	1	0	0	0	0	0	0	0	1	4722	1024	36	4		4	DNTTIP2	1	94341979	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1787552	94341979	154908642	106	152516											
ABCA4	24	broad.mit.edu	37	chr1	94463473	94463473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagcaggctgtccttgtGggagaggaggagctggaaga	19	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94463473	T	T	94463473	3	4	191	1	0	0	0	0	1	0	0	0	34	1348	47	2	160	2	ABCA4	1	94463473	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	121494	94463473	154787148	107	152517											
ABCA4	24	broad.mit.edu	37	chr1	94510090	94510090	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcccaggcctggcacccctGagctgggctctagagaagtg	14	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94510090	C	C	94510090	1	2	191	0	1	0	0	0	0	0	0	0	34	1305	45	4		4	ABCA4	1	94510090	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	46617	94510090	154740531	108	152518											
SLC44A3	126969	broad.mit.edu	37	chr1	95290214	95290214	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtatctaaataagtccccAgtctgtaaggaactgtacct	7	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95290214	G	G	95290214	1	3	191	0	1	0	0	0	0	0	0	0	14751	203	7	5		5	SLC44A3	1	95290214	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	780124	95290214	153960407	109	152519											
DPYD	1806	broad.mit.edu	37	chr1	97658654	97658654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttcagctatacgtggaaCtggtttccctttctggtgac	11	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97658654	A	A	97658654	3	1	191	1	0	0	0	0	1	0	0	0	4785	565	20	3	500	3	DPYD	1	97658654	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2368440	97658654	151591967	110	152520											
DPYD	1806	broad.mit.edu	37	chr1	98015157	98015157	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaagaagcttgctttccatCattcaccgattccactgtag	6	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98015157	T	T	98015157	3	4	191	1	0	0	0	0	1	0	0	0	4785	826	29	4	1642	4	DPYD	1	98015157	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	356503	98015157	151235464	111	152521											
PALMD	54873	broad.mit.edu	37	chr1	100155280	100155280	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctagaaaaagatcagaagcTagtcctcatgaaaacacaaa	6	9	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100155280	A	A	100155280	2	1	191	1	0	0	0	0	0	0	0	1	11505	1509	53	5		5	PALMD	1	100155280	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	2140123	100155280	149095341	112	152522											
RTCD1	8634	broad.mit.edu	37	chr1	100738823	100738823	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatggaaccagcctacatAttcttataacactgtttacc	4	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100738823	T	T	100738823	1	4	191	0	1	0	0	0	0	0	0	0	13829	464	16	5		5	RTCD1	1	100738823	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	583543	100738823	148511798	113	152523											
CDC14A	8556	broad.mit.edu	37	chr1	100963614	100963614	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agataagactactttattgtGacactttgccatttttctcc	5	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100963614	T	T	100963614	1	4	191	0	1	0	0	0	0	0	0	0	3086	1305	45	3		3	CDC14A	1	100963614	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	224791	100963614	148287007	114	152524											
CDC14A	8556	broad.mit.edu	37	chr1	100964459	100964459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgttgtctgttttttcCctcctcacttgtgttttcca	5	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100964459	A	A	100964459	1	1	191	0	1	0	0	0	0	0	0	0	3086	638	22	2		2	CDC14A	1	100964459	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	845	100964459	148286162	115	152525											
VCAM1	7412	broad.mit.edu	37	chr1	101197881	101197881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacaaactctttgagtctGctgaatccatagcccagttt	6	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101197881	T	T	101197881	1	4	191	0	1	0	0	0	0	0	0	0	17264	1334	46	3		3	VCAM1	1	101197881	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	233422	101197881	148052740	116	152526											
COL11A1	1301	broad.mit.edu	37	chr1	103348790	103348790	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctggataaatgcaagtctCaccaccagatgtgaaattac	8	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103348790	A	A	103348790	4	1	191	1	0	0	0	0	0	1	0	0	3699	835	29	3	500	3	COL11A1	1	103348790	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2150909	103348790	145901831	117	152527											
COL11A1	1301	broad.mit.edu	37	chr1	103352682	103352682	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagatattaattattactGgttatgtttttgttataaga	7	2	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103352682	T	T	103352682	1	4	191	0	1	0	0	0	0	0	0	0	3699	1363	47	2		2	COL11A1	1	103352682	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3892	103352682	145897939	118	152528											
COL11A1	1301	broad.mit.edu	37	chr1	103385723	103385723	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcattttaactttaatttTtgcaactactagatgacatg	4	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103385723	G	G	103385723	1	3	191	0	1	0	0	0	0	0	0	0	3699	1856	64	5		5	COL11A1	1	103385723	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	33041	103385723	145864898	119	152529											
COL11A1	1301	broad.mit.edu	37	chr1	103444652	103444652	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccgagggcctggtttgccAgctactccctagcaaagaca	10	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103444652	T	T	103444652	2	4	191	1	0	0	0	0	0	0	0	1	3699	175	7	5		5	COL11A1	1	103444652	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	58929	103444652	145805969	120	152530											
COL11A1	1301	broad.mit.edu	37	chr1	103471712	103471712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgattaagcgaagtgaCttttattactagcaaggaag	10	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103471712	A	A	103471712	1	1	191	0	1	0	0	0	0	0	0	0	3699	580	20	3		3	COL11A1	1	103471712	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	27060	103471712	145778909	121	152531											
AMY1A	276	broad.mit.edu	37	chr1	104297234	104297234	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctctatacttaccttctGggatgctaggtagaaaacca	8	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104297234	A	A	104297234	4	1	191	1	0	0	0	0	0	1	0	0	591	1357	47	4	4166	4	AMY1A	1	104297234	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	825522	104297234	144953387	122	152532											
VAV3	10451	broad.mit.edu	37	chr1	108307697	108307697	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactaaaaataaataggcaCctctaatttcagtttgacat	4	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108307697	A	A	108307697	5	1	191	1	0	0	0	0	0	0	1	0	17260	521	18	3	1722	3	VAV3	1	108307697	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	4010463	108307697	140942924	123	152533											
AHCYL1	10768	broad.mit.edu	37	chr1	110561046	110561046	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatcgcatgaaaaacagttGtatcgtatgcaatatgggcc	11	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110561046	A	A	110561046	3	1	191	1	0	0	0	0	1	0	0	0	410	1377	48	4	1221	4	AHCYL1	1	110561046	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2253349	110561046	138689575	124	152534											
KCNA10	3744	broad.mit.edu	37	chr1	111059903	111059903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacttctctgtggaacagcCaccattggtcttattaagag	9	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111059903	A	A	111059903	3	1	191	1	0	0	0	0	1	0	0	0	8072	594	21	2	32	2	KCNA10	1	111059903	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	498857	111059903	138190718	125	152535											
ADORA3	140	broad.mit.edu	37	chr1	112042824	112042824	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagagcaaacaagaaaagAaccagaaacaaggacttagc	9	8	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112042824	G	G	112042824	2	3	191	1	0	0	0	0	0	0	0	1	329	233	9	5		5	ADORA3	1	112042824	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	982921	112042824	137207797	126	152536											
DENND2C	163259	broad.mit.edu	37	chr1	115138455	115138455	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctcctttggcactcacctCctgtaagaacttgtctgcac	6	15	2	1	rs146178653	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115138455	A	A	115138455	4	1	191	1	0	0	0	0	0	1	0	0	4470	864	30	3	483	3	DENND2C	1	115138455	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3095631	115138455	134112166	127	152537											
SYCP1	6847	broad.mit.edu	37	chr1	115400159	115400159	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattaaatttcttgtaattgGaatataacttattacctata	3	4	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115400159	T	T	115400159	1	4	191	0	1	0	0	0	0	0	0	0	15550	1189	41	3		3	SYCP1	1	115400159	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	261704	115400159	133850462	128	152538											
IGSF3	3321	broad.mit.edu	37	chr1	117122231	117122231	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctctgggccaaagacagcAtctgggcccacgctcagcag	11	16	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117122231	G	G	117122231	2	3	191	1	0	0	0	0	0	0	0	1	7671	214	8	5		5	IGSF3	1	117122231	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	1722072	117122231	132128390	129	152539											
SPAG17	200162	broad.mit.edu	37	chr1	118548121	118548121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctgccagctcgcagctgCtcacgcttttgaaaaggata	9	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118548121	A	A	118548121	3	1	191	1	0	0	0	0	1	0	0	0	15095	796	28	3	2047	3	SPAG17	1	118548121	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1425890	118548121	130702500	130	152540											
HSD3B2	3284	broad.mit.edu	37	chr1	119965140	119965140	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcagcgagatctggcgtAtaagccactctacagctggg	13	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119965140	G	G	119965140	3	3	191	1	0	0	0	0	1	0	0	0	7458	449	16	5	1026	5	HSD3B2	1	119965140	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1417019	119965140	129285481	131	152541											
NBPF9	400818	broad.mit.edu	37	chr1	144220792	144220792	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctactttccaggctcaGcagggagctgctggatgaga	12	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144220792	T	T	144220792	3	4	191	1	0	0	0	0	1	0	0	0	10294	986	34	3		3	NBPF9	1	144220792	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	24255652	144220792	105029829	132	152542											
BOLA1	51027	broad.mit.edu	37	chr1	149871606	149871606	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgtctgagtctctggcGtagcccatgctgagtgggcg	16	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149871606	T	T	149871606	1	4	191	0	1	0	0	0	0	0	0	0	1491	1160	40	3		3	BOLA1	1	149871606	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	5650814	149871606	99379015	133	152543											
C1orf51	148523	broad.mit.edu	37	chr1	150256785	150256785	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctgttcttcctttacctGactacatgcttgaatctcaa	4	12	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150256785	A	A	150256785	1	1	191	0	1	0	0	0	0	0	0	0	2065	1305	45	4		4	C1orf51	1	150256785	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	385179	150256785	98993836	134	152544											
CTSK	1513	broad.mit.edu	37	chr1	150771612	150771612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgagtgttaaaagggtgaCtgaataacaaaagtagtgtt	12	2	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150771612	T	T	150771612	1	4	191	0	1	0	0	0	0	0	0	0	4071	580	20	4		4	CTSK	1	150771612	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	514827	150771612	98479009	135	152545											
MLLT11	10962	broad.mit.edu	37	chr1	151039695	151039695	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacaagtggtttctttctagGaagctatgagggaccctgtg	13	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151039695	A	A	151039695	1	1	191	0	1	0	0	0	0	0	0	0	9720	1188	41	4		4	MLLT11	1	151039695	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	268083	151039695	98210926	136	152546											
TUFT1	7286	broad.mit.edu	37	chr1	151512777	151512777	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggggcggttccgcgcgcGcccgcccagttggagccaga	17	14	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151512777	T	T	151512777	1	4	191	0	1	0	0	0	0	0	0	0	16898	1102	38	3		3	TUFT1	1	151512777	5'Flank	SNP	G	TCGA-64-5781-01A-01D-1625-08	473082	151512777	97737844	137	152547											
RORC	6097	broad.mit.edu	37	chr1	151785401	151785401	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgccacctgaatgtccttcAcccaagcccagcaacactca	5	18	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151785401	T	T	151785401	1	4	191	0	1	0	0	0	0	0	0	0	13641	174	6	5		5	RORC	1	151785401	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	272624	151785401	97465220	138	152548											
TCHH	7062	broad.mit.edu	37	chr1	152082419	152082419	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggttcctctctcagcagctGctcttcctcctgctgcagct	8	17	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152082419	C	C	152082419	3	2	191	1	0	0	0	0	1	0	0	0	15822	1328	46	4	2561	4	TCHH	1	152082419	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	297018	152082419	97168202	139	152549											
HRNR	388697	broad.mit.edu	37	chr1	152188223	152188223	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catatgggccgtagctggaaGactgcccagaaccagaccca	11	13	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152188223	C	C	152188223	3	2	191	1	0	0	0	0	1	0	0	0	7426	942	33	4	2674	4	HRNR	1	152188223	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	105804	152188223	97062398	140	152550											
HRNR	388697	broad.mit.edu	37	chr1	152192704	152192704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctgagctagactcgtgGtgaccaaagccagaagagta	12	9	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152192704	T	T	152192704	3	4	191	1	0	0	0	0	1	0	0	0	7426	1252	44	3	7155	3	HRNR	1	152192704	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4481	152192704	97057917	141	152551											
FLG	2312	broad.mit.edu	37	chr1	152279701	152279701	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcttgtcctgggcccctctGattgtccctggcccacctgc	10	17	1	1	rs121909626		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279701	T	T	152279701	4	4	191	1	0	0	0	0	0	1	0	0	5979	1294	45	3	4528	3	FLG	1	152279701	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	86997	152279701	96970920	142	152552											
FLG2	388698	broad.mit.edu	37	chr1	152328896	152328896	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgacttgatgtagactcatGctggccacaagtttgacctg	10	9	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152328896	C	C	152328896	3	2	191	1	0	0	0	0	1	0	0	0	5980	1319	46	4	5813	4	FLG2	1	152328896	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	49195	152328896	96921725	143	152553											
CRNN	49860	broad.mit.edu	37	chr1	152382557	152382557	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggctggtctggctcctgCcttgaccgtggatctcagtc	12	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152382557	T	T	152382557	3	4	191	1	0	0	0	0	1	0	0	0	3924	739	26	4	490	4	CRNN	1	152382557	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	53661	152382557	96868064	144	152554											
LCE2D	353141	broad.mit.edu	37	chr1	152637025	152637025	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggtggacagggaccacaaAgactcatggggcttccccag	14	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152637025	G	G	152637025	1	3	191	0	1	0	0	0	0	0	0	0	8740	87	3	5		5	LCE2D	1	152637025	3'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	254468	152637025	96613596	145	152555											
LCE2A	353139	broad.mit.edu	37	chr1	152671565	152671565	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggggctgctgcagctctgGgggtggcggctgctgcctga	20	10	1	1	rs61812673		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152671565	C	C	152671565	3	2	191	1	0	0	0	0	1	0	0	0	8737	1232	43	4	190	4	LCE2A	1	152671565	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	34540	152671565	96579056	146	152556											
S100A12	6283	broad.mit.edu	37	chr1	153347110	153347110	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcaaggaaacaagggaagtCtagaggcagtttctccccca	10	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153347110	A	A	153347110	1	1	191	0	1	0	0	0	0	0	0	0	13885	928	32	3		3	S100A12	1	153347110	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	675545	153347110	95903511	147	152557											
CRTC2	200186	broad.mit.edu	37	chr1	153924738	153924738	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaggagatggaaagatGctaggggaaggagagaaaaa	17	2	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153924738	A	A	153924738	2	1	191	1	0	0	0	0	0	0	0	1	3932	1333	46	4		4	CRTC2	1	153924738	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	577628	153924738	95325883	148	152558											
UBAP2L	9898	broad.mit.edu	37	chr1	154238930	154238930	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatctcaggaataagggccAggtagctagctgagctaatc	11	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154238930	G	G	154238930	1	3	191	0	1	0	0	0	0	0	0	0	16964	203	7	5		5	UBAP2L	1	154238930	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	314192	154238930	95011691	149	152559											
AQP10	89872	broad.mit.edu	37	chr1	154296832	154296832	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgttggcacagccacttaccAgctgttggtggctctgcacc	11	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154296832	T	T	154296832	3	4	191	1	0	0	0	0	1	0	0	0	824	188	7	5	804	5	AQP10	1	154296832	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	57902	154296832	94953789	150	152560											
ATP8B2	57198	broad.mit.edu	37	chr1	154315513	154315513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctctgcaatgcggctGggctggggcttcctgggcgg	17	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154315513	T	T	154315513	1	4	191	0	1	0	0	0	0	0	0	0	1199	1363	47	2		2	ATP8B2	1	154315513	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	18681	154315513	94935108	151	152561											
UBE2Q1	55585	broad.mit.edu	37	chr1	154524003	154524003	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggacaaggcaagcaggtccaGatggagcttccagagaaccc	13	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154524003	C	C	154524003	1	2	191	0	1	0	0	0	0	0	0	0	16995	957	33	4		4	UBE2Q1	1	154524003	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	208490	154524003	94726618	152	152562											
KCNN3	3782	broad.mit.edu	37	chr1	154744567	154744567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacaaagcgggtgttgaaGttgatcttgttgagggcccc	14	7	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154744567	T	T	154744567	3	4	191	1	0	0	0	0	1	0	0	0	8150	1020	36	3	887	3	KCNN3	1	154744567	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	220564	154744567	94506054	153	152563											
RAG1AP1	55974	broad.mit.edu	37	chr1	155200945	155200945	+	Intron	DEL	C	-	-													agtatcaggaaccctgcctgCcctttggaccagtcatggag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155200945	-	-	155200945	6	5	191	0	1	1	0	1	0	0	0	0	13112	754	26	0		0	RAG1AP1	1	155200945	Intron	DEL	C	TCGA-64-5781-01A-01D-1625-08	456378	155200945	94049676	154	152564											
RUSC1	23623	broad.mit.edu	37	chr1	155294114	155294114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggctgctgcgggacccGggtttcccctttccggcgcc	14	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155294114	T	T	155294114	1	4	191	0	1	0	0	0	0	0	0	0	13861	1131	39	1		1	RUSC1	1	155294114	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	93169	155294114	93956507	155	152565											
RHBG	57127	broad.mit.edu	37	chr1	156354617	156354617	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agagacctctgagggtggagGaggcagacactcaggcctaa	15	9	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156354617	T	T	156354617	4	4	191	1	0	0	0	0	0	1	0	0	13433	1175	41	3	1396	3	RHBG	1	156354617	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1060503	156354617	92896004	156	152566											
NES	10763	broad.mit.edu	37	chr1	156642662	156642662	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctggtccaggcaggaCgctggcaggaatggccaccc	13	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156642662	A	A	156642662	3	1	191	1	0	0	0	0	1	0	0	0	10432	536	19	3	3551	3	NES	1	156642662	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	288045	156642662	92607959	157	152567											
NTRK1	4914	broad.mit.edu	37	chr1	156849272	156849272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgggtctgagattcactgGctctggttttcaacctacct	9	11	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156849272	T	T	156849272	1	4	191	0	1	0	0	0	0	0	0	0	10801	1218	42	3		3	NTRK1	1	156849272	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	206610	156849272	92401349	158	152568											
ARHGEF11	9826	broad.mit.edu	37	chr1	156911551	156911551	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgctccctgctagcatttCcctgttgtggctgtctaccc	8	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156911551	T	T	156911551	1	4	191	0	1	0	0	0	0	0	0	0	898	870	30	4		4	ARHGEF11	1	156911551	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	62279	156911551	92339070	159	152569											
FCRL5	83416	broad.mit.edu	37	chr1	157485461	157485461	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagttggagagacgtgtGgactcatctgtgaggagctg	16	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157485461	A	A	157485461	1	1	191	0	1	0	0	0	0	0	0	0	5855	1363	47	4		4	FCRL5	1	157485461	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	573910	157485461	91765160	160	152570											
FCRL5	83416	broad.mit.edu	37	chr1	157497686	157497686	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggggcgagacactggaaCtgagagagaaaatgagttag	16	4	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157497686	A	A	157497686	5	1	191	1	0	0	0	0	0	0	1	0	5855	579	20	3	1288	3	FCRL5	1	157497686	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	12225	157497686	91752935	161	152571											
FCRL3	115352	broad.mit.edu	37	chr1	157665415	157665415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgaaggagacaaaaggGctgtcagaggattctgacgt	14	6	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157665415	T	T	157665415	1	4	191	0	1	0	0	0	0	0	0	0	5853	1218	42	3		3	FCRL3	1	157665415	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	167729	157665415	91585206	162	152572											
KIRREL	55243	broad.mit.edu	37	chr1	158064602	158064602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcaacacctatagccggGgccctgcctctgactatggc	10	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158064602	T	T	158064602	3	4	191	1	0	0	0	0	1	0	0	0	8395	1232	43	2	2024	2	KIRREL	1	158064602	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	399187	158064602	91186019	163	152573											
CD1D	912	broad.mit.edu	37	chr1	158152753	158152753	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgtctcaggattctacccAaagcctgtatgggtgaagtg	11	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158152753	T	T	158152753	2	4	191	1	0	0	0	0	0	0	0	1	3007	117	5	5		5	CD1D	1	158152753	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	88151	158152753	91097868	164	152574											
CD1C	911	broad.mit.edu	37	chr1	158261151	158261151	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctacctctttggattaactCgggagattcaagaccatgca	8	10	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158261151	G	G	158261151	3	3	191	1	0	0	0	0	1	0	0	0	3006	875	31	4	295	4	CD1C	1	158261151	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	108398	158261151	90989470	165	152575											
CD1C	911	broad.mit.edu	37	chr1	158262139	158262139	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggatgcagggaagatGtatgtacacaggcaaggtca	13	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262139	A	A	158262139	3	1	191	1	0	0	0	0	1	0	0	0	3006	1377	48	4	604	4	CD1C	1	158262139	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	988	158262139	90988482	166	152576											
CD1E	913	broad.mit.edu	37	chr1	158323885	158323885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggtagggcaccagagggCtgagaggaagctctggggag	19	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158323885	A	A	158323885	1	1	191	0	1	0	0	0	0	0	0	0	3008	812	28	3		3	CD1E	1	158323885	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	61746	158323885	90926736	167	152577											
CD1E	913	broad.mit.edu	37	chr1	158326382	158326382	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacggttaaaaaaacagagGtgagctttttcttgttcttt	8	6	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158326382	T	T	158326382	5	4	191	1	0	0	0	0	0	0	1	0	3008	1275	44	3	1017	3	CD1E	1	158326382	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	2497	158326382	90924239	168	152578											
OR10T2	128360	broad.mit.edu	37	chr1	158368428	158368428	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagtaaccactgtgtaggTcactgccaccaactgatcct	10	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158368428	C	C	158368428	3	2	191	1	0	0	0	0	1	0	0	0	11013	1667	58	5	117	5	OR10T2	1	158368428	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	42046	158368428	90882193	169	152579											
OR10K1	391109	broad.mit.edu	37	chr1	158435340	158435340	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccctgactctcctttataGaagtgctctccatggagcaa	8	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158435340	C	C	158435340	1	2	191	0	1	0	0	0	0	0	0	0	11007	957	33	4		4	OR10K1	1	158435340	5'Flank	SNP	G	TCGA-64-5781-01A-01D-1625-08	66912	158435340	90815281	170	152580											
OR10R2	343406	broad.mit.edu	37	chr1	158450496	158450496	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcattatggctgtgcttccTtcatctacctgaggcctaca	7	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158450496	A	A	158450496	3	1	191	1	0	0	0	0	1	0	0	0	11011	1609	56	5	831	5	OR10R2	1	158450496	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	15156	158450496	90800125	171	152581											
OR10Z1	128368	broad.mit.edu	37	chr1	158576328	158576328	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctttgccttgttcctctctCtgtatctagtcactctgacc	5	14	6	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158576328	T	T	158576328	2	4	191	1	0	0	0	0	0	0	0	1	11017	912	32	4		4	OR10Z1	1	158576328	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	125832	158576328	90674293	172	152582											
OR10Z1	128368	broad.mit.edu	37	chr1	158576605	158576605	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgacagatatgtggccaTctgtgctccactccactatg	8	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158576605	C	C	158576605	3	2	191	1	0	0	0	0	1	0	0	0	11017	1435	50	5	379	5	OR10Z1	1	158576605	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	277	158576605	90674016	173	152583											
SPTA1	6708	broad.mit.edu	37	chr1	158585251	158585251	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggttaccagctcaaaaccTagaggtggaagaggagataa	12	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158585251	C	C	158585251	1	2	191	0	1	0	0	0	0	0	0	0	15234	1537	53	5		5	SPTA1	1	158585251	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	8646	158585251	90665370	174	152584											
SPTA1	6708	broad.mit.edu	37	chr1	158613118	158613118	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactcaggcctgacctgtctAgtacacgttggagccgcgta	11	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158613118	T	T	158613118	3	4	191	1	0	0	0	0	1	0	0	0	15234	420	15	5	2911	5	SPTA1	1	158613118	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	27867	158613118	90637503	175	152585											
SPTA1	6708	broad.mit.edu	37	chr1	158615169	158615169	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcctccatgtcagcacGgtgctcctgtgggaaaaagg	12	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158615169	C	C	158615169	3	2	191	1	0	0	0	0	1	0	0	0	15234	1116	39	4	3352	4	SPTA1	1	158615169	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2051	158615169	90635452	176	152586											
SPTA1	6708	broad.mit.edu	37	chr1	158626560	158626560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtaaaagctgctttcCatctatcataaagttatttt	5	8	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158626560	A	A	158626560	1	1	191	0	1	0	0	0	0	0	0	0	15234	609	21	2		2	SPTA1	1	158626560	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	11391	158626560	90624061	177	152587											
SPTA1	6708	broad.mit.edu	37	chr1	158651107	158651107	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaagtcttgcctttttcAtattcagatccatatgttaa	6	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158651107	T	T	158651107	1	4	191	0	1	0	0	0	0	0	0	0	15234	232	8	5		5	SPTA1	1	158651107	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	24547	158651107	90599514	178	152588											
SPTA1	6708	broad.mit.edu	37	chr1	158653036	158653036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatgcctcaaccccaggGgaagataagaggcaggagtc	12	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158653036	T	T	158653036	1	4	191	0	1	0	0	0	0	0	0	0	15234	1247	43	2		2	SPTA1	1	158653036	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1929	158653036	90597585	179	152589											
OR6K3	391114	broad.mit.edu	37	chr1	158687240	158687240	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggaatcctcaatatcacAgtgacaattcttacatagga	8	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158687240	T	T	158687240	2	4	191	1	0	0	0	0	0	0	0	1	11297	175	7	5		5	OR6K3	1	158687240	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	34204	158687240	90563381	180	152590											
OR6K3	391114	broad.mit.edu	37	chr1	158687470	158687470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accgaagaggcaggaacctgCagagagttgagcacagagcc	14	10	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158687470	A	A	158687470	3	1	191	1	0	0	0	0	1	0	0	0	11297	710	25	3	513	3	OR6K3	1	158687470	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	230	158687470	90563151	181	152591											
OR6N1	128372	broad.mit.edu	37	chr1	158736408	158736408	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagataaatctggacaCcctggagatgggggaagccc	15	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158736408	T	T	158736408	3	4	191	1	0	0	0	0	1	0	0	0	11300	507	18	4	876	4	OR6N1	1	158736408	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	48938	158736408	90514213	182	152592											
MNDA	4332	broad.mit.edu	37	chr1	158813156	158813156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggcacctgcacccaccgCaagaaacaaactgacatcgg	9	15	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158813156	A	A	158813156	3	1	191	1	0	0	0	0	1	0	0	0	9770	710	25	3	359	3	MNDA	1	158813156	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	76748	158813156	90437465	183	152593											
MNDA	4332	broad.mit.edu	37	chr1	158813815	158813815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccaagagcagagtaagcCcccaggtccctcaggagcca	11	15	1	2	rs149728698		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158813815	A	A	158813815	3	1	191	1	0	0	0	0	1	0	0	0	9770	623	22	2	483	2	MNDA	1	158813815	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	659	158813815	90436806	184	152594											
MNDA	4332	broad.mit.edu	37	chr1	158815621	158815621	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattaccatatctgattactCtgaatgtaaaggagtaatgg	8	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158815621	A	A	158815621	3	1	191	1	0	0	0	0	1	0	0	0	9770	913	32	3	829	3	MNDA	1	158815621	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1806	158815621	90435000	185	152595											
PYHIN1	149628	broad.mit.edu	37	chr1	158908283	158908284	+	Frame_Shift_Ins	INS	-	A	A													gctacacctgcatgcaccccINSaagcaaccgtctcacagcta					rs138593148		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158908284	A	A	158908283	7	5	191	1	0	1	1	0	0	0	0	0	12973	594	21	0	368	0	PYHIN1	1	158908283	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	92662	158908283	90342338	186	152596											
FCER1A	2205	broad.mit.edu	37	chr1	159271987	159271987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatattaaattgcccagttGggcaccatcctgaatattat	6	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159271987	T	T	159271987	1	4	191	0	1	0	0	0	0	0	0	0	5831	1363	47	2		2	FCER1A	1	159271987	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	363704	159271987	89978634	187	152597											
OR10J3	441911	broad.mit.edu	37	chr1	159283942	159283942	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagatgacaaaggcatcacAgaatggcaggccaaacacag	12	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159283942	T	T	159283942	3	4	191	1	0	0	0	0	1	0	0	0	11005	188	7	5	483	5	OR10J3	1	159283942	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	11955	159283942	89966679	188	152598											
CD244	51744	broad.mit.edu	37	chr1	160811393	160811393	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatacaaaaacctggaaCgtggctgtctgaacttttcc	7	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160811393	A	A	160811393	2	1	191	1	0	0	0	0	0	0	0	1	3017	523	19	3		3	CD244	1	160811393	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1527451	160811393	88439228	189	152599											
F11R	50848	broad.mit.edu	37	chr1	160969630	160969630	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaaaagcagaccccaatcCccaccccaggtctgggctca	8	16	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160969630	G	G	160969630	1	3	191	0	1	0	0	0	0	0	0	0	5381	638	22	4		4	F11R	1	160969630	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	158237	160969630	88280991	190	152600											
APOA2	336	broad.mit.edu	37	chr1	161192794	161192794	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctggaagtactgagaaacCaggctctccacacatggctc	10	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161192794	G	G	161192794	2	3	191	1	0	0	0	0	0	0	0	1	784	581	21	4		4	APOA2	1	161192794	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	223164	161192794	88057827	191	152601											
FCGR2A	2212	broad.mit.edu	37	chr1	161479613	161479613	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatttgtgtctttcagaatGgctggtgctccagacccctc	9	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161479613	A	A	161479613	4	1	191	1	0	0	0	0	0	1	0	0	5838	1357	47	4	382	4	FCGR2A	1	161479613	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	286819	161479613	87771008	192	152602											
FCGR2B	2213	broad.mit.edu	37	chr1	161641130	161641130	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctgagattcagggcctctCaagctcctgggcttcctctt	10	13	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161641130	G	G	161641130	1	3	191	0	1	0	0	0	0	0	0	0	5839	841	29	4		4	FCGR2B	1	161641130	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	161517	161641130	87609491	193	152603											
FCGR2B	2213	broad.mit.edu	37	chr1	161641338	161641338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcccacccacacgcagcCcagctacaggttcaaggcca	7	18	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161641338	A	A	161641338	3	1	191	1	0	0	0	0	1	0	0	0	5839	623	22	2	300	2	FCGR2B	1	161641338	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	208	161641338	87609283	194	152604											
ATF6	22926	broad.mit.edu	37	chr1	161736161	161736161	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttgtgaaatgggggagcCggctggggttgccggcacca	17	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161736161	T	T	161736161	3	4	191	1	0	0	0	0	1	0	0	0	1088	652	23	4	13	4	ATF6	1	161736161	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	94823	161736161	87514460	195	152605											
C1orf111	284680	broad.mit.edu	37	chr1	162345014	162345015	+	Intron	DNP	GG	TT	TT													cagacacctctgcttccttaGggaagcagccccttttcatc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	162345015	TT	TT	162345014	1	4	191	0	1	0	0	0	0	0	0	0	2004	1015	35	2		2	C1orf111	1	162345014	Intron	DNP	GG	TCGA-64-5781-01A-01D-1625-08	608853	162345014	86905607	196	152606											
RGS5	8490	broad.mit.edu	37	chr1	163137970	163137970	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgaagggggtagttctacAgatgaggaatggtgctaaac	14	4	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163137970	T	T	163137970	1	4	191	0	1	0	0	0	0	0	0	0	13417	203	7	5		5	RGS5	1	163137970	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	792956	163137970	86112651	197	152607											
NUF2	83540	broad.mit.edu	37	chr1	163297194	163297194	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttcttctttgctttcatcGattataatattgtatggtaa	5	5	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163297194	T	T	163297194	1	4	191	0	1	0	0	0	0	0	0	0	10842	1073	37	3		3	NUF2	1	163297194	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	159224	163297194	85953427	198	152608											
PBX1	5087	broad.mit.edu	37	chr1	164789339	164789339	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcttttaacatgtcaaactCtggagatttgttcatgagcg	8	7	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164789339	G	G	164789339	3	3	191	1	0	0	0	0	1	0	0	0	11586	913	32	4	1054	4	PBX1	1	164789339	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1492145	164789339	84461282	199	152609											
MGST3	4259	broad.mit.edu	37	chr1	165623639	165623639	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactttaaaattttaaatcCtatgctggccaggcacagtg	7	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165623639	T	T	165623639	1	4	191	0	1	0	0	0	0	0	0	0	9655	696	24	4		4	MGST3	1	165623639	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	834300	165623639	83626982	200	152610											
FAM78B	149297	broad.mit.edu	37	chr1	166039586	166039586	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcattaggggggatgggttcCatccggctcaggatccgggg	18	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166039586	G	G	166039586	3	3	191	1	0	0	0	0	1	0	0	0	5680	594	21	4	111	4	FAM78B	1	166039586	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	415947	166039586	83211035	201	152611											
ILDR2	387597	broad.mit.edu	37	chr1	166896490	166896490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcctccatttattttaCcaagtagaaaatagggtttc	9	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166896490	A	A	166896490	1	1	191	0	1	0	0	0	0	0	0	0	7780	522	18	3		3	ILDR2	1	166896490	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	856904	166896490	82354131	202	152612											
MAEL	84944	broad.mit.edu	37	chr1	166973340	166973340	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttacccactactctcttctTgtacccccacttctatacct	2	17	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166973340	C	C	166973340	1	2	191	0	1	0	0	0	0	0	0	0	9242	1827	63	5		5	MAEL	1	166973340	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	76850	166973340	82277281	203	152613											
DUSP27	92235	broad.mit.edu	37	chr1	167095342	167095342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgacagcgccagccacctgaGtggctcctccctggggaagg	14	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167095342	C	C	167095342	3	2	191	1	0	0	0	0	1	0	0	0	4864	1029	36	4	992	4	DUSP27	1	167095342	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	122002	167095342	82155279	204	152614											
ADCY10	55811	broad.mit.edu	37	chr1	167791452	167791452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctagcctagtcactctcaGttgaatttcccactgcaggg	8	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167791452	T	T	167791452	1	4	191	0	1	0	0	0	0	0	0	0	293	1044	36	3		3	ADCY10	1	167791452	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	696110	167791452	81459169	205	152615											
ADCY10	55811	broad.mit.edu	37	chr1	167793718	167793718	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctttaagataaatacctgcTgttcagaaggagacatctgc	9	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167793718	A	A	167793718	3	1	191	1	0	0	0	0	1	0	0	0	293	1580	55	5	808	5	ADCY10	1	167793718	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2266	167793718	81456903	206	152616											
SFT2D2	375035	broad.mit.edu	37	chr1	168206008	168206008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtctttggcattgacgtGgtaagtaaccttttaaacaa	9	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168206008	T	T	168206008	3	4	191	1	0	0	0	0	1	0	0	0	14299	1362	47	2	435	2	SFT2D2	1	168206008	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	412290	168206008	81044613	207	152617											
C1orf114	57821	broad.mit.edu	37	chr1	169388190	169388190	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgatatccagactcccttCtataaataagttcagctttc	4	11	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169388190	T	T	169388190	1	4	191	0	1	0	0	0	0	0	0	0	2007	928	32	4		4	C1orf114	1	169388190	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1182182	169388190	79862431	208	152618											
F5	2153	broad.mit.edu	37	chr1	169510946	169510946	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcttgaatggggaatgtttGatagtgttcctctgggggca	15	5	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169510946	T	T	169510946	3	4	191	1	0	0	0	0	1	0	0	0	5391	1299	45	3	3344	3	F5	1	169510946	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	122756	169510946	79739675	209	152619											
SELE	6401	broad.mit.edu	37	chr1	169698749	169698749	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttgtgttccatgggaagcTtccagggttttggaaacatt	13	6	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169698749	C	C	169698749	3	2	191	1	0	0	0	0	1	0	0	0	14126	1609	56	5	1083	5	SELE	1	169698749	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	187803	169698749	79551872	210	152620											
GORAB	92344	broad.mit.edu	37	chr1	170501310	170501310	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagctgggcagcagtgttGgcagtcgcggctgcgagatt	17	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170501310	A	A	170501310	2	1	191	1	0	0	0	0	0	0	0	1	6638	1339	47	4		4	GORAB	1	170501310	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	802561	170501310	78749311	211	152621											
C1orf129	80133	broad.mit.edu	37	chr1	170940798	170940798	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcttatcttagaatccTagtctgatttataacaggat	7	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170940798	C	C	170940798	1	2	191	0	1	0	0	0	0	0	0	0	2016	1537	53	5		5	C1orf129	1	170940798	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	439488	170940798	78309823	212	152622											
FMO2	2327	broad.mit.edu	37	chr1	171162369	171162369	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acattgtcgtcacactgcagCaaccaaagacaatcgcatta	6	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171162369	T	T	171162369	1	4	191	0	1	0	0	0	0	0	0	0	6013	725	25	4		4	FMO2	1	171162369	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	221571	171162369	78088252	213	152623											
BAT2L2	23215	broad.mit.edu	37	chr1	171560734	171560734	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcattttttaaggcaaagcaGagagcagaggttcttcagtc	10	7	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171560734	T	T	171560734	3	4	191	1	0	0	0	0	1	0	0	0	1326	933	33	3	8224	3	BAT2L2	1	171560734	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	398365	171560734	77689887	214	152624											
TNR	7143	broad.mit.edu	37	chr1	175293685	175293685	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agatacattcattaggctgtCccatttgtcactgctttatc	6	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175293685	G	G	175293685	1	3	191	0	1	0	0	0	0	0	0	0	16461	870	30	4		4	TNR	1	175293685	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3732951	175293685	73956936	215	152625											
TNR	7143	broad.mit.edu	37	chr1	175332791	175332791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggatatgctagttctccCataatcttcacccaaatcct	6	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175332791	A	A	175332791	1	1	191	0	1	0	0	0	0	0	0	0	16461	609	21	2		2	TNR	1	175332791	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	39106	175332791	73917830	216	152626											
TNR	7143	broad.mit.edu	37	chr1	175334200	175334200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtgccatggacagccaCaaggttcacaatatactctg	8	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334200	A	A	175334200	3	1	191	1	0	0	0	0	1	0	0	0	16461	478	17	3	1591	3	TNR	1	175334200	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1409	175334200	73916421	217	152627											
TNR	7143	broad.mit.edu	37	chr1	175372489	175372489	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcctcgccagtgtaggGctcttcacagacacactccc	9	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175372489	C	C	175372489	3	2	191	1	0	0	0	0	1	0	0	0	16461	1203	42	4	3393	4	TNR	1	175372489	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	38289	175372489	73878132	218	152628											
PAPPA2	60676	broad.mit.edu	37	chr1	176709266	176709266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctaaggacatcctcccGcattggtctttcggctccca	9	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176709266	T	T	176709266	3	4	191	1	0	0	0	0	1	0	0	0	11527	1087	38	3	4188	3	PAPPA2	1	176709266	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1336777	176709266	72541355	219	152629											
ASTN1	460	broad.mit.edu	37	chr1	176983814	176983814	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttttacccatttgctgttCagaatatagccaccctttag	5	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176983814	T	T	176983814	1	4	191	0	1	0	0	0	0	0	0	0	1068	841	29	4		4	ASTN1	1	176983814	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	274548	176983814	72266807	220	152630											
SEC16B	89866	broad.mit.edu	37	chr1	177929539	177929539	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggaatcattaagaataacCtggaataaaacaatcagatt	6	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177929539	A	A	177929539	5	1	191	1	0	0	0	0	0	0	1	0	14100	695	24	2	2322	2	SEC16B	1	177929539	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	945725	177929539	71321082	221	152631											
RASAL2	9462	broad.mit.edu	37	chr1	178380796	178380796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgtctgccatatctttGcaaccttcagtgacactttt	7	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178380796	T	T	178380796	1	4	191	0	1	0	0	0	0	0	0	0	13172	1334	46	3		3	RASAL2	1	178380796	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	451257	178380796	70869825	222	152632											
RASAL2	9462	broad.mit.edu	37	chr1	178410824	178410824	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaatgtataactttgtAagcagttaattgatagaagg	8	2	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178410824	T	T	178410824	1	4	191	0	1	0	0	0	0	0	0	0	13172	377	13	5		5	RASAL2	1	178410824	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	30028	178410824	70839797	223	152633											
C1orf125	126859	broad.mit.edu	37	chr1	179398751	179398751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcatactgctatcaaaCaaggtaaaggtcaattatct	5	8	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179398751	A	A	179398751	3	1	191	1	0	0	0	0	1	0	0	0	2013	477	17	3	1375	3	C1orf125	1	179398751	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	987927	179398751	69851870	224	152634											
TDRD5	163589	broad.mit.edu	37	chr1	179558153	179558153	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgcccatgggaacacaGtgctggcctacacctggcag	12	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179558153	T	T	179558153	1	4	191	0	1	0	0	0	0	0	0	0	15855	1044	36	3		3	TDRD5	1	179558153	5'Flank	SNP	G	TCGA-64-5781-01A-01D-1625-08	159402	179558153	69692468	225	152635											
TDRD5	163589	broad.mit.edu	37	chr1	179621306	179621306	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accgaaagataagtccacagTcaaaagagagtgagttacgt	10	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179621306	C	C	179621306	3	2	191	1	0	0	0	0	1	0	0	0	15855	1667	58	5	2180	5	TDRD5	1	179621306	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	63153	179621306	69629315	226	152636											
TDRD5	163589	broad.mit.edu	37	chr1	179659919	179659919	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaagcgtcaagaatctgtAgaccagctgtctttgatttt	9	8	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179659919	G	G	179659919	2	3	191	1	0	0	0	0	0	0	0	1	15855	407	15	5		5	TDRD5	1	179659919	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	38613	179659919	69590702	227	152637											
CEP350	9857	broad.mit.edu	37	chr1	179981084	179981084	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagtagtcatcttataagtAcatcttcttggcgagatgga	10	6	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179981084	G	G	179981084	3	3	191	1	0	0	0	0	1	0	0	0	3284	391	14	5	1297	5	CEP350	1	179981084	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	321165	179981084	69269537	228	152638											
QSOX1	5768	broad.mit.edu	37	chr1	180155358	180155358	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtctgtgcaattctacGgatggtcagtgtgcgttcct	11	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180155358	C	C	180155358	1	2	191	0	1	0	0	0	0	0	0	0	12991	1131	39	4		4	QSOX1	1	180155358	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	174274	180155358	69095263	229	152639											
ACBD6	84320	broad.mit.edu	37	chr1	180257594	180257594	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcctggtctcggagagtGgggtcagcaccagactggag	15	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180257594	T	T	180257594	2	4	191	1	0	0	0	0	0	0	0	1	126	1335	47	2		2	ACBD6	1	180257594	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	102236	180257594	68993027	230	152640											
KIAA1614	57710	broad.mit.edu	37	chr1	180886939	180886939	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactaagtggcagctgagagCcctgtttctggctctgtcct	11	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180886939	G	G	180886939	1	3	191	0	1	0	0	0	0	0	0	0	8318	754	26	4		4	KIAA1614	1	180886939	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	629345	180886939	68363682	231	152641											
STX6	10228	broad.mit.edu	37	chr1	180933677	180933677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctctgagatattttcgCctgggcgtttcggatcccat	9	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180933677	A	A	180933677	1	1	191	0	1	0	0	0	0	0	0	0	15467	754	26	3		3	STX6	1	180933677	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	46738	180933677	68316944	232	152642											
IER5	51278	broad.mit.edu	37	chr1	181058930	181058930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggagggagaggagagcGgtccggaagccgccgagccc	19	10	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181058930	T	T	181058930	3	4	191	1	0	0	0	0	1	0	0	0	7578	1116	39	1	894	1	IER5	1	181058930	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	125253	181058930	68191691	233	152643											
CACNA1E	777	broad.mit.edu	37	chr1	181620524	181620524	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggctgtacttcatccccctCatcatcattggatccttctt	5	14	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181620524	T	T	181620524	2	4	191	1	0	0	0	0	0	0	0	1	2568	813	29	4		4	CACNA1E	1	181620524	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	561594	181620524	67630097	234	152644											
CACNA1E	777	broad.mit.edu	37	chr1	181680202	181680202	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accgtgcctggatagacaaaGcaggtaggcctggggggctg	17	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181680202	C	C	181680202	3	2	191	1	0	0	0	0	1	0	0	0	2568	971	34	4	1198	4	CACNA1E	1	181680202	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	59678	181680202	67570419	235	152645											
CACNA1E	777	broad.mit.edu	37	chr1	181702190	181702190	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgagtgagtcacagggctCccagatggatggcacacagg	16	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181702190	A	A	181702190	1	1	191	0	1	0	0	0	0	0	0	0	2568	870	30	3		3	CACNA1E	1	181702190	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	21988	181702190	67548431	236	152646											
CACNA1E	777	broad.mit.edu	37	chr1	181725949	181725949	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggactcaaaaaaaattaatgGaggatctgcaaagtcaaaga	9	5	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181725949	T	T	181725949	1	4	191	0	1	0	0	0	0	0	0	0	2568	1189	41	3		3	CACNA1E	1	181725949	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	23759	181725949	67524672	237	152647											
CACNA1E	777	broad.mit.edu	37	chr1	181754678	181754678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagtaatgggtgcgggGcccaagaactttctagtgac	14	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181754678	T	T	181754678	1	4	191	0	1	0	0	0	0	0	0	0	2568	1218	42	3		3	CACNA1E	1	181754678	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	28729	181754678	67495943	238	152648											
CACNA1E	777	broad.mit.edu	37	chr1	181754967	181754967	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggcctgtgagtagcacCaaaacatccctggcatggct	10	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181754967	T	T	181754967	1	4	191	0	1	0	0	0	0	0	0	0	2568	609	21	4		4	CACNA1E	1	181754967	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	289	181754967	67495654	239	152649											
SMG7	9887	broad.mit.edu	37	chr1	183518882	183518882	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggtgagtttataacttcActgtcatgtctttcaggaaa	10	6	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183518882	G	G	183518882	1	3	191	0	1	0	0	0	0	0	0	0	14912	174	6	5		5	SMG7	1	183518882	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1763915	183518882	65731739	240	152650											
RGL1	23179	broad.mit.edu	37	chr1	183895386	183895386	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcccaggacagctaaacGgggctgctggagtaacagac	14	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183895386	T	T	183895386	3	4	191	1	0	0	0	0	1	0	0	0	13384	1116	39	1	2442	1	RGL1	1	183895386	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	376504	183895386	65355235	241	152651											
FAM129A	116496	broad.mit.edu	37	chr1	184767187	184767187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctctatggagtgtccCtgcagcaccaggtaaccttt	8	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184767187	A	A	184767187	1	1	191	0	1	0	0	0	0	0	0	0	5482	696	24	2		2	FAM129A	1	184767187	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	871801	184767187	64483434	242	152652											
C1orf26	54823	broad.mit.edu	37	chr1	185143897	185143897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatgtgtcttagagaaatgGaagagaaatcaattttctca	8	4	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185143897	T	T	185143897	3	4	191	1	0	0	0	0	1	0	0	0	2057	1183	41	3	632	3	C1orf26	1	185143897	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	376710	185143897	64106724	243	152653											
HMCN1	83872	broad.mit.edu	37	chr1	186084471	186084471	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggcttgtgaggctactgGgataccaaaaccatcaatca	9	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186084471	T	T	186084471	3	4	191	1	0	0	0	0	1	0	0	0	7287	1232	43	2	11784	2	HMCN1	1	186084471	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	940574	186084471	63166150	244	152654											
HMCN1	83872	broad.mit.edu	37	chr1	186113375	186113375	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggaaaggtactcagacAagagcaagactttgtaataa	11	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186113375	T	T	186113375	2	4	191	1	0	0	0	0	0	0	0	1	7287	117	5	5		5	HMCN1	1	186113375	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	28904	186113375	63137246	245	152655											
TPR	7175	broad.mit.edu	37	chr1	186308841	186308841	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aatacgcttagtatgaacttCcttttcagaaaggagcttcc	7	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186308841	G	G	186308841	3	3	191	1	0	0	0	0	1	0	0	0	16540	864	30	4	3095	4	TPR	1	186308841	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	195466	186308841	62941780	246	152656											
PLA2G4A	5321	broad.mit.edu	37	chr1	186925481	186925499	+	Intron	DEL	GTGTACAAATATAATTAGT	-	-													gatgcagctgtagcaggtaaGtgtacaaatataattagtgg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	186925499	-	-	186925481	6	5	191	0	1	1	0	1	0	0	0	0	12096	1044	36	0		0	PLA2G4A	1	186925481	Intron	DEL	GTGTACAAATATAATTAGT	TCGA-64-5781-01A-01D-1625-08	616640	186925481	62325140	247	152657											
RGS1	5996	broad.mit.edu	37	chr1	192544930	192544930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctaagagcaccatgcgcgCagcagccatctccactccaa	8	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192544930	T	T	192544930	3	4	191	1	0	0	0	0	1	0	0	0	13401	710	25	4	10	4	RGS1	1	192544930	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5619449	192544930	56705691	248	152658											
KCNT2	343450	broad.mit.edu	37	chr1	196448400	196448400	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtaacttaatgagaaaaCgcaatacaattaaattatat	4	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196448400	A	A	196448400	1	1	191	0	1	0	0	0	0	0	0	0	8162	551	19	3		3	KCNT2	1	196448400	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3903470	196448400	52802221	249	152659											
CFH	3075	broad.mit.edu	37	chr1	196711029	196711029	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattgtctcagtttacctaGctttgaaaatgccataccca	6	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196711029	T	T	196711029	3	4	191	1	0	0	0	0	1	0	0	0	3313	971	34	3	3073	3	CFH	1	196711029	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	262629	196711029	52539592	250	152660											
CFHR4	10877	broad.mit.edu	37	chr1	196874477	196874477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctttcctctctttgagGtgatagtgttttacagaaaa	7	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196874477	T	T	196874477	1	4	191	0	1	0	0	0	0	0	0	0	3317	1276	44	3		3	CFHR4	1	196874477	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	163448	196874477	52376144	251	152661											
CFHR4	10877	broad.mit.edu	37	chr1	196881879	196881879	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctattttaggaacatgctCaaaatcagatatagaaattg	6	5	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196881879	G	G	196881879	4	3	191	1	0	0	0	0	0	1	0	0	3317	838	29	4	276	4	CFHR4	1	196881879	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	7402	196881879	52368742	252	152662											
CFHR2	3080	broad.mit.edu	37	chr1	196919931	196919931	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tattttaaaatgcagttgtaCtttttctttgctacttccat	4	7	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196919931	G	G	196919931	1	3	191	0	1	0	0	0	0	0	0	0	3315	580	20	4		4	CFHR2	1	196919931	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	38052	196919931	52330690	253	152663											
CFHR5	81494	broad.mit.edu	37	chr1	196965196	196965196	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacctgaactcgagtacggtTatgttcagccgtctgtccct	9	12	2	1	rs143240067	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196965196	A	A	196965196	3	1	191	1	0	0	0	0	1	0	0	0	3318	1754	61	5	857	5	CFHR5	1	196965196	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	45265	196965196	52285425	254	152664											
CFHR5	81494	broad.mit.edu	37	chr1	196967403	196967403	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcagtctgtataaaCgggaaatggaatcctgaagt	11	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196967403	T	T	196967403	2	4	191	1	0	0	0	0	0	0	0	1	3318	535	19	4		4	CFHR5	1	196967403	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2207	196967403	52283218	255	152665											
F13B	2165	broad.mit.edu	37	chr1	197024886	197024886	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accattttccttgttcgcaaCgagatatttttgatcccctc	5	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197024886	T	T	197024886	3	4	191	1	0	0	0	0	1	0	0	0	5384	536	19	4	692	4	F13B	1	197024886	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	57483	197024886	52225735	256	152666											
F13B	2165	broad.mit.edu	37	chr1	197024935	197024935	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atattcattgcatctatattCcactgaggatcctgttgcat	6	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197024935	A	A	197024935	4	1	191	1	0	0	0	0	0	1	0	0	5384	864	30	3	741	3	F13B	1	197024935	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	49	197024935	52225686	257	152667											
ASPM	259266	broad.mit.edu	37	chr1	197069979	197069979	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgtgaacaagcaaggccaGaagctttataccactcttga	8	11	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197069979	A	A	197069979	3	1	191	1	0	0	0	0	1	0	0	0	1060	942	33	4	2075	4	ASPM	1	197069979	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	45044	197069979	52180642	258	152668											
CRB1	23418	broad.mit.edu	37	chr1	197298196	197298196	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttctaagtggcagaagcaGaggtgacattttatttttca	9	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197298196	A	A	197298196	1	1	191	0	1	0	0	0	0	0	0	0	3880	957	33	4		4	CRB1	1	197298196	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	228217	197298196	51952425	259	152669											
CRB1	23418	broad.mit.edu	37	chr1	197398517	197398517	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagatatgtggtttcacCgtcaacatttttctatttag	6	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197398517	A	A	197398517	1	1	191	0	1	0	0	0	0	0	0	0	3880	667	23	1		1	CRB1	1	197398517	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	100321	197398517	51852104	260	152670											
CRB1	23418	broad.mit.edu	37	chr1	197398720	197398720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcacggagcccagtgcCagccggtgcttcaaggattt	12	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197398720	A	A	197398720	3	1	191	1	0	0	0	0	1	0	0	0	3880	595	21	2	2848	2	CRB1	1	197398720	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	203	197398720	51851901	261	152671											
CRB1	23418	broad.mit.edu	37	chr1	197404326	197404326	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttatctctcttactttgaAaatgttcatggtttcattaa	4	6	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197404326	C	C	197404326	3	2	191	1	0	0	0	0	1	0	0	0	3880	11	1	5	3367	5	CRB1	1	197404326	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	5606	197404326	51846295	262	152672											
CRB1	23418	broad.mit.edu	37	chr1	197407898	197407898	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctctaattttttatctcAgttcccataggaaaatctat	3	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197407898	T	T	197407898	1	4	191	0	1	0	0	0	0	0	0	0	3880	203	7	5		5	CRB1	1	197407898	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	3572	197407898	51842723	263	152673											
PTPRC	5788	broad.mit.edu	37	chr1	198668713	198668713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtttcatcagtacagacgCctcaccttcccacgcacgca	7	16	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198668713	A	A	198668713	3	1	191	1	0	0	0	0	1	0	0	0	12905	739	26	3	338	3	PTPRC	1	198668713	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1260815	198668713	50581908	264	152674											
KIF14	9928	broad.mit.edu	37	chr1	200523545	200523545	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggaaagatgtctaagGttccttaaaatataaaattc	6	4	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200523545	C	C	200523545	1	2	191	0	1	0	0	0	0	0	0	0	8346	1276	44	4		4	KIF14	1	200523545	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1854832	200523545	48727076	265	152675											
KIF21B	23046	broad.mit.edu	37	chr1	200971531	200971531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagagctcgcggttggggGggtaaggggctgatgatgcc	20	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200971531	T	T	200971531	1	4	191	0	1	0	0	0	0	0	0	0	8359	1247	43	2		2	KIF21B	1	200971531	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	447986	200971531	48279090	266	152676											
TNNI1	7135	broad.mit.edu	37	chr1	201382136	201382136	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaacccattatggccatGccccttcccttccttagact	5	18	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201382136	T	T	201382136	1	4	191	0	1	0	0	0	0	0	0	0	16449	1334	46	3		3	TNNI1	1	201382136	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	410605	201382136	47868485	267	152677											
NAV1	89796	broad.mit.edu	37	chr1	201777167	201777167	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatatagaggagattgctacAcccgactcttcagccccctc	8	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201777167	G	G	201777167	2	3	191	1	0	0	0	0	0	0	0	1	10277	146	6	5		5	NAV1	1	201777167	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	395031	201777167	47473454	268	152678											
NAV1	89796	broad.mit.edu	37	chr1	201779675	201779675	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagaaatgcgtcgacaGcctggtgttcgagacgctga	15	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201779675	T	T	201779675	3	4	191	1	0	0	0	0	1	0	0	0	10277	971	34	3	4737	3	NAV1	1	201779675	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2508	201779675	47470946	269	152679											
LMOD1	25802	broad.mit.edu	37	chr1	201869655	201869655	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatccactgcagccctgacCcggcccttgtcaatgccccg	8	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201869655	A	A	201869655	2	1	191	1	0	0	0	0	0	0	0	1	8930	610	22	2		2	LMOD1	1	201869655	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	89980	201869655	47380966	270	152680											
ADORA1	134	broad.mit.edu	37	chr1	203097872	203097872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgagctccctgcccctcCcagacgggtctccccatccc	8	22	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203097872	A	A	203097872	1	1	191	0	1	0	0	0	0	0	0	0	326	638	22	2		2	ADORA1	1	203097872	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1228217	203097872	46152749	271	152681											
CHI3L1	1116	broad.mit.edu	37	chr1	203153670	203153670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactcctatgccatcatcCtctgccgtcctgcccctggg	7	19	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203153670	A	A	203153670	1	1	191	0	1	0	0	0	0	0	0	0	3371	696	24	2		2	CHI3L1	1	203153670	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	55798	203153670	46096951	272	152682											
LRRN2	10446	broad.mit.edu	37	chr1	204587709	204587709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtacacccggtacctcctgCctgcatgggcaggtgtcagt	13	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204587709	A	A	204587709	3	1	191	1	0	0	0	0	1	0	0	0	9122	739	26	3	733	3	LRRN2	1	204587709	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1434039	204587709	44662912	273	152683											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209951493	209951493	+	Silent	SNP	G	A	A													gaggcagagaaactcaccctGgtgaccagagtacagcagtt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209951493	A	A	209951493	2	1	191	1	0	0	0	0	0	0	0	1	16566	1335	47	4		4	TRAF3IP3	1	209951493	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	5363784	209951493	39299128	274	152684	655	2									
TRAF3IP3	80342	broad.mit.edu	37	chr1	209951495	209951495	+	Missense_Mutation	SNP	T	A	A													ggcagagaaactcaccctggTgaccagagtacagcagttgc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209951495	A	A	209951495	3	1	191	1	0	0	0	0	1	0	0	0	16566	1696	59	5	1271	5	TRAF3IP3	1	209951495	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2	209951495	39299126	275	152685	655	2									
SYT14	255928	broad.mit.edu	37	chr1	210267718	210267718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgctggatgaattgcagcCaccaccatatcaggatgaca	9	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210267718	A	A	210267718	3	1	191	1	0	0	0	0	1	0	0	0	15589	594	21	2	651	2	SYT14	1	210267718	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	316223	210267718	38982903	276	152686											
HHAT	55733	broad.mit.edu	37	chr1	210577832	210577832	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtggtacaagacagaaaacGagtactacctgctgcagttc	11	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210577832	A	A	210577832	3	1	191	1	0	0	0	0	1	0	0	0	7156	1059	37	4	609	4	HHAT	1	210577832	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	310114	210577832	38672789	277	152687											
NSL1	25936	broad.mit.edu	37	chr1	212911978	212911978	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtggataacaggctgcatCctgagaacttgggaaaatcc	12	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212911978	T	T	212911978	2	4	191	1	0	0	0	0	0	0	0	1	10768	854	30	4		4	NSL1	1	212911978	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2334146	212911978	36338643	278	152688											
VASH2	79805	broad.mit.edu	37	chr1	213134569	213134569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcccagactggctccaggCgatccagaattacatgaaga	10	11	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213134569	A	A	213134569	3	1	191	1	0	0	0	0	1	0	0	0	17253	768	27	3	344	3	VASH2	1	213134569	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	222591	213134569	36116052	279	152689											
RPS6KC1	26750	broad.mit.edu	37	chr1	213415049	213415049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactgaacaatgccaagcaCatgaggagaaaggcatagag	12	7	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213415049	A	A	213415049	3	1	191	1	0	0	0	0	1	0	0	0	13769	478	17	3	2272	3	RPS6KC1	1	213415049	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	280480	213415049	35835572	280	152690											
KCNK2	3776	broad.mit.edu	37	chr1	215368183	215368183	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtaactccattgataagaaTactagatttctatgttttgc	6	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215368183	A	A	215368183	1	1	191	0	1	0	0	0	0	0	0	0	8136	1421	49	5		5	KCNK2	1	215368183	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1953134	215368183	33882438	281	152691											
USH2A	7399	broad.mit.edu	37	chr1	215812410	215812410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtctatgctaatatattaGgactccaagtatgtataaac	6	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215812410	T	T	215812410	1	4	191	0	1	0	0	0	0	0	0	0	17162	1015	35	2		2	USH2A	1	215812410	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	444227	215812410	33438211	282	152692											
USH2A	7399	broad.mit.edu	37	chr1	215956147	215956147	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agattgtctattttggtccaCgtagggggactcactccttg	11	9	2	1	rs114719960	byFrequency;by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215956147	T	T	215956147	2	4	191	1	0	0	0	0	0	0	0	1	17162	523	19	4		4	USH2A	1	215956147	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	143737	215956147	33294474	283	152693											
USH2A	7399	broad.mit.edu	37	chr1	215960131	215960131	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcttatcacagtgcaaatgTggctggtaaagttgaagtca	10	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215960131	A	A	215960131	3	1	191	1	0	0	0	0	1	0	0	0	17162	1696	59	5	5424	5	USH2A	1	215960131	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	3984	215960131	33290490	284	152694											
USH2A	7399	broad.mit.edu	37	chr1	216052364	216052364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaagtcacattggttaaaGtgatgtgagggtcaggcatg	15	5	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216052364	T	T	216052364	3	4	191	1	0	0	0	0	1	0	0	0	17162	1029	36	3	7432	3	USH2A	1	216052364	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	92233	216052364	33198257	285	152695											
USH2A	7399	broad.mit.edu	37	chr1	216222099	216222099	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagagagagacaaaaacaaaGagaccagagacagaaatcaa	10	6	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216222099	T	T	216222099	1	4	191	0	1	0	0	0	0	0	0	0	17162	957	33	3		3	USH2A	1	216222099	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	169735	216222099	33028522	286	152696											
USH2A	7399	broad.mit.edu	37	chr1	216420490	216420490	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactgagccatggaggttaCactggcagggctcacatcca	11	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216420490	T	T	216420490	3	4	191	1	0	0	0	0	1	0	0	0	17162	478	17	4	13616	4	USH2A	1	216420490	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	198391	216420490	32830131	287	152697											
GPATCH2	55105	broad.mit.edu	37	chr1	217783678	217783678	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctaccattgaagttggagtCcctccagattttttaatatt	6	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217783678	A	A	217783678	2	1	191	1	0	0	0	0	0	0	0	1	6656	842	30	3		3	GPATCH2	1	217783678	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1363188	217783678	31466943	288	152698											
EPRS	2058	broad.mit.edu	37	chr1	220153629	220153629	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatttagggtacatttaTtcattaagatctataaaact	4	5	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220153629	A	A	220153629	1	1	191	0	1	0	0	0	0	0	0	0	5233	1508	52	5		5	EPRS	1	220153629	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2369951	220153629	29096992	289	152699											
IARS2	55699	broad.mit.edu	37	chr1	220269552	220269552	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacggtgaccctcatgttgGacatgctttaaataaggtaa	9	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220269552	T	T	220269552	3	4	191	1	0	0	0	0	1	0	0	0	7544	1174	41	3	380	3	IARS2	1	220269552	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	115923	220269552	28981069	290	152700											
MARK1	4139	broad.mit.edu	37	chr1	220791648	220791648	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttctattattttcctcTtaggctgaaaaccttctcct	3	11	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220791648	C	C	220791648	1	2	191	0	1	0	0	0	0	0	0	0	9404	1624	56	5		5	MARK1	1	220791648	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	522096	220791648	28458973	291	152701											
MARK1	4139	broad.mit.edu	37	chr1	220799536	220799536	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catctggcttctattacatcAatgacattgtcttggccatc	6	11	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220799536	T	T	220799536	1	4	191	0	1	0	0	0	0	0	0	0	9404	145	5	5		5	MARK1	1	220799536	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	7888	220799536	28451085	292	152702											
DUSP10	11221	broad.mit.edu	37	chr1	221875811	221875811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattctcggtgtcacaccGttgtttaggtcttcctcgaa	10	10	3	0	rs61757363		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	221875811	T	T	221875811	3	4	191	1	0	0	0	0	1	0	0	0	4850	1136	40	3	60	3	DUSP10	1	221875811	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1076275	221875811	27374810	293	152703											
DUSP10	11221	broad.mit.edu	37	chr1	221912792	221912792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtggtggtggtgccagCggcaatggcttgggtttggg	21	6	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221912792	A	A	221912792	3	1	191	1	0	0	0	0	1	0	0	0	4850	768	27	3	1165	3	DUSP10	1	221912792	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	36981	221912792	27337829	294	152704											
SUSD4	55061	broad.mit.edu	37	chr1	223400986	223400986	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaacatcctggccaggatGacgagcagcagcaccagcag	13	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223400986	T	T	223400986	2	4	191	1	0	0	0	0	0	0	0	1	15528	1277	45	3		3	SUSD4	1	223400986	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1488194	223400986	25849635	295	152705											
LEFTY1	10637	broad.mit.edu	37	chr1	226108847	226108847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgcaaatggtgctcaacCcagcccagggaccaaccagg	10	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226108847	A	A	226108847	1	1	191	0	1	0	0	0	0	0	0	0	8787	638	22	2		2	LEFTY1	1	226108847	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2707861	226108847	23141774	296	152706											
CDC42BPA	8476	broad.mit.edu	37	chr1	227228031	227228031	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accactttctagaatgttttCtaaataggaatagaatgaat	6	5	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227228031	T	T	227228031	1	4	191	0	1	0	0	0	0	0	0	0	3102	928	32	4		4	CDC42BPA	1	227228031	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1119184	227228031	22022590	297	152707											
OBSCN	84033	broad.mit.edu	37	chr1	228494903	228494903	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccctgcctcccacagccCctcattcttggtcagcggca	8	19	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228494903	G	G	228494903	1	3	191	0	1	0	0	0	0	0	0	0	10907	638	22	4		4	OBSCN	1	228494903	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1266872	228494903	20755718	298	152708											
OBSCN	84033	broad.mit.edu	37	chr1	228520489	228520489	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctctgagggccgaggccatCctggtgcggtagcttatgct	14	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228520489	T	T	228520489	1	4	191	0	1	0	0	0	0	0	0	0	10907	870	30	4		4	OBSCN	1	228520489	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	25586	228520489	20730132	299	152709											
NUP133	55746	broad.mit.edu	37	chr1	229613447	229613447	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagttcagaatcagaatcCaaatcagagtgagaggaaaa	9	6	4	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229613447	T	T	229613447	2	4	191	1	0	0	0	0	0	0	0	1	10849	593	21	4		4	NUP133	1	229613447	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1092958	229613447	19637174	300	152710											
TAF5L	27097	broad.mit.edu	37	chr1	229738095	229738095	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatcgggggagatttctgcAgtgttcaacagctgctctgt	12	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229738095	T	T	229738095	2	4	191	1	0	0	0	0	0	0	0	1	15648	175	7	5		5	TAF5L	1	229738095	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	124648	229738095	19512526	301	152711											
GALNT2	2590	broad.mit.edu	37	chr1	230378980	230378980	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgggcagggaggcgtcGccggttggcatggggttgtg	22	8	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230378980	T	T	230378980	1	4	191	0	1	0	0	0	0	0	0	0	6275	1102	38	3		3	GALNT2	1	230378980	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	640885	230378980	18871641	302	152712											
TTC13	79573	broad.mit.edu	37	chr1	231081095	231081095	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaccctggtctgtgtcaggtCatgtaggcgctatggcaatc	12	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231081095	A	A	231081095	1	1	191	0	1	0	0	0	0	0	0	0	16806	841	29	3		3	TTC13	1	231081095	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	702115	231081095	18169526	303	152713											
EXOC8	149371	broad.mit.edu	37	chr1	231473215	231473215	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccaggctgcttttctgctCggtcagcaaatggctgagct	11	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231473215	G	G	231473215	3	3	191	1	0	0	0	0	1	0	0	0	5353	893	31	4	1904	4	EXOC8	1	231473215	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	392120	231473215	17777406	304	152714											
DISC1	27185	broad.mit.edu	37	chr1	231885540	231885540	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagatgaaagtgctggccTagaaactagtaaccttgtca	11	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231885540	C	C	231885540	1	2	191	0	1	0	0	0	0	0	0	0	4578	1537	53	5		5	DISC1	1	231885540	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	412325	231885540	17365081	305	152715											
DISC1	27185	broad.mit.edu	37	chr1	232144895	232144895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaatattgggaaggcttccCattgagcatataaactttta	7	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232144895	T	T	232144895	1	4	191	0	1	0	0	0	0	0	0	0	4578	594	21	4		4	DISC1	1	232144895	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	259355	232144895	17105726	306	152716											
SIPA1L2	57568	broad.mit.edu	37	chr1	232600887	232600887	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catccttccttggctttaccTtctcctttttcttcgcaccc	3	17	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232600887	A	A	232600887	3	1	191	1	0	0	0	0	1	0	0	0	14443	1609	56	5	2709	5	SIPA1L2	1	232600887	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	455992	232600887	16649734	307	152717											
PCNXL2	80003	broad.mit.edu	37	chr1	233344477	233344477	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaatggtacctcttattttGattaaatgaaaaaagcctca	6	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233344477	A	A	233344477	1	1	191	0	1	0	0	0	0	0	0	0	11686	1305	45	4		4	PCNXL2	1	233344477	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	743590	233344477	15906144	308	152718											
LYST	1130	broad.mit.edu	37	chr1	235915417	235915417	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcatgaattgtaactgcTatgaaaagttgctgtatatc	8	6	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235915417	C	C	235915417	3	2	191	1	0	0	0	0	1	0	0	0	9216	1512	53	5	3998	5	LYST	1	235915417	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2570940	235915417	13335204	309	152719											
LYST	1130	broad.mit.edu	37	chr1	235973489	235973489	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggagtctgttctttgGttgctaagcggtcaagttta	13	6	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235973489	A	A	235973489	3	1	191	1	0	0	0	0	1	0	0	0	9216	1261	44	4	10972	4	LYST	1	235973489	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	58072	235973489	13277132	310	152720											
HEATR1	55127	broad.mit.edu	37	chr1	236736265	236736265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgcatctgaacccccccCagcattggatgctactacct	6	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236736265	A	A	236736265	1	1	191	0	1	0	0	0	0	0	0	0	7094	609	21	2		2	HEATR1	1	236736265	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	762776	236736265	12514356	311	152721											
HEATR1	55127	broad.mit.edu	37	chr1	236754225	236754225	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtggatgattcaggctgagCatcaaagaagtatcagaatc	11	6	3	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236754225	G	G	236754225	3	3	191	1	0	0	0	0	1	0	0	0	7094	710	25	4	5118	4	HEATR1	1	236754225	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	17960	236754225	12496396	312	152722											
MTR	4548	broad.mit.edu	37	chr1	237001686	237001686	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atagtgacctgtggcctctgTgtgattttcttgcctttctg	10	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237001686	A	A	237001686	1	1	191	0	1	0	0	0	0	0	0	0	10052	1711	59	5		5	MTR	1	237001686	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	247461	237001686	12248935	313	152723											
RYR2	6262	broad.mit.edu	37	chr1	237551515	237551515	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcattgcattgagacttGcactcttttgccttgatgta	8	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237551515	T	T	237551515	1	4	191	0	1	0	0	0	0	0	0	0	13880	1334	46	3		3	RYR2	1	237551515	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	549829	237551515	11699106	314	152724											
RYR2	6262	broad.mit.edu	37	chr1	237608548	237608548	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtatagggagctgtgcatatGattttatctgaacgtaacag	11	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237608548	T	T	237608548	1	4	191	0	1	0	0	0	0	0	0	0	13880	1305	45	3		3	RYR2	1	237608548	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	57033	237608548	11642073	315	152725											
RYR2	6262	broad.mit.edu	37	chr1	237796776	237796776	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaagtttggcacacacaTggacacacggggattgacga	12	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237796776	C	C	237796776	1	2	191	0	1	0	0	0	0	0	0	0	13880	1479	51	5		5	RYR2	1	237796776	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	188228	237796776	11453845	316	152726											
RGS7	6000	broad.mit.edu	37	chr1	241099828	241099828	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttttaaaagttctgttcAaaagaaacctaactaacaaa	4	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241099828	C	C	241099828	1	2	191	0	1	0	0	0	0	0	0	0	13419	145	5	5		5	RGS7	1	241099828	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	3303052	241099828	8150793	317	152727											
WDR64	128025	broad.mit.edu	37	chr1	241964543	241964543	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatcagaaatggctgctGcacataaaatggcaacgttt	8	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241964543	T	T	241964543	1	4	191	0	1	0	0	0	0	0	0	0	17442	1334	46	3		3	WDR64	1	241964543	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	864715	241964543	7286078	318	152728											
C1orf101	257044	broad.mit.edu	37	chr1	244643149	244643149	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatttagcttcaacttttaAttagccacaaatagattatc	4	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	244643149	G	G	244643149	1	3	191	0	1	0	0	0	0	0	0	0	1996	116	4	5		5	C1orf101	1	244643149	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	2678606	244643149	4607472	319	152729											
AHCTF1	25909	broad.mit.edu	37	chr1	247059106	247059106	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttgataactttaaaaataCcaaacattttacttgttatc	3	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247059106	T	T	247059106	1	4	191	0	1	0	0	0	0	0	0	0	408	522	18	4		4	AHCTF1	1	247059106	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2415957	247059106	2191515	320	152730											
NLRP3	114548	broad.mit.edu	37	chr1	247582054	247582054	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgtgttcactgcctggtatCttagtgtggaccgaagccta	11	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247582054	G	G	247582054	1	3	191	0	1	0	0	0	0	0	0	0	10573	928	32	4		4	NLRP3	1	247582054	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	522948	247582054	1668567	321	152731											
NLRP3	114548	broad.mit.edu	37	chr1	247592911	247592911	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaacagccacctcacttcCagtttttgccggggcctctt	9	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247592911	A	A	247592911	2	1	191	1	0	0	0	0	0	0	0	1	10573	581	21	2		2	NLRP3	1	247592911	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	10857	247592911	1657710	322	152732											
OR2G2	81470	broad.mit.edu	37	chr1	247751823	247751823	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattctggtttctcgtctGgaacccaagcttcatatgcc	7	12	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247751823	T	T	247751823	2	4	191	1	0	0	0	0	0	0	0	1	11092	1335	47	2		2	OR2G2	1	247751823	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	158912	247751823	1498798	323	152733											
OR2G2	81470	broad.mit.edu	37	chr1	247752093	247752093	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgcatatccatctctgCatggccttggcatctatggc	8	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247752093	A	A	247752093	4	1	191	1	0	0	0	0	0	1	0	0	11092	718	25	3	434	3	OR2G2	1	247752093	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	270	247752093	1498528	324	152734											
OR2G2	81470	broad.mit.edu	37	chr1	247752523	247752523	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acactgtggtaacccgcatgCttaaccctcttatttatacc	5	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247752523	G	G	247752523	3	3	191	1	0	0	0	0	1	0	0	0	11092	797	28	4	864	4	OR2G2	1	247752523	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	430	247752523	1498098	325	152735											
OR2G3	81469	broad.mit.edu	37	chr1	247769067	247769067	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcttcataccccaatgtaCttttttctcagcaacctctc	2	16	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247769067	G	G	247769067	4	3	191	1	0	0	0	0	0	1	0	0	11093	576	20	4	182	4	OR2G3	1	247769067	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	16544	247769067	1481554	326	152736											
OR13G1	441933	broad.mit.edu	37	chr1	247836003	247836004	+	Frame_Shift_Ins	INS	-	T	T													atagcggtcataggccatggINStggtgaagagaaccatctca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247836004	T	T	247836003	7	5	191	1	0	1	1	0	0	0	0	0	11036	1261	44	0	586	0	OR13G1	1	247836003	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	66936	247836003	1414618	327	152737											
TRIM58	25893	broad.mit.edu	37	chr1	248039227	248039227	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaagctggatcccgccacGgcgcacccgagtctgctctt	11	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248039227	T	T	248039227	2	4	191	1	0	0	0	0	0	0	0	1	16656	1103	39	1		1	TRIM58	1	248039227	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	203224	248039227	1211394	328	152738											
OR2AK2	391191	broad.mit.edu	37	chr1	248128964	248128964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagaccattagatttttgGgctgtgagattcaaacgtat	10	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248128964	T	T	248128964	3	4	191	1	0	0	0	0	1	0	0	0	11080	1232	43	2	333	2	OR2AK2	1	248128964	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	89737	248128964	1121657	329	152739											
OR2L13	284521	broad.mit.edu	37	chr1	248247621	248247621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgcacaccacagccagCgcgggagatggccttatttc	11	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247621	A	A	248247621	1	1	191	0	1	0	0	0	0	0	0	0	11100	783	27	3		3	OR2L13	1	248247621	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	118657	248247621	1003000	330	152740											
OR2L13	284521	broad.mit.edu	37	chr1	248247739	248247739	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaagtacatgggcgtgtgGagccggccggtcccggtgaa	18	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247739	A	A	248247739	1	1	191	0	1	0	0	0	0	0	0	0	11100	1189	41	4		4	OR2L13	1	248247739	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	118	248247739	1002882	331	152741											
OR2M5	127059	broad.mit.edu	37	chr1	248309381	248309381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttaggaaagggcaagtgtgGagagtgagtactttgtaaac	15	3	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248309381	T	T	248309381	3	4	191	1	0	0	0	0	1	0	0	0	11107	1174	41	3	934	3	OR2M5	1	248309381	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	61642	248309381	941240	332	152742											
OR2M2	391194	broad.mit.edu	37	chr1	248343360	248343360	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaatcacagcccaccacacAcgttcctcttctttctggtc	4	17	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343360	T	T	248343360	3	4	191	1	0	0	0	0	1	0	0	0	11104	159	6	5	75	5	OR2M2	1	248343360	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	33979	248343360	907261	333	152743											
OR2M2	391194	broad.mit.edu	37	chr1	248343446	248343446	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcatctacctggacacCcagctccacacccccatgta	4	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248343446	G	G	248343446	2	3	191	1	0	0	0	0	0	0	0	1	11104	610	22	4		4	OR2M2	1	248343446	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	86	248343446	907175	334	152744											
OR2M4	26245	broad.mit.edu	37	chr1	248402423	248402423	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatgtacttcctcctcagtCaactgtcccttatggacctc	5	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248402423	T	T	248402423	4	4	191	1	0	0	0	0	0	1	0	0	11106	827	29	4	195	4	OR2M4	1	248402423	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	58977	248402423	848198	335	152745											
OR2T6	254879	broad.mit.edu	37	chr1	248551230	248551230	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctttctctacatgggcttTatgggggctgaattcttcct	10	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248551230	C	C	248551230	2	2	191	1	0	0	0	0	0	0	0	1	11123	1751	61	5		5	OR2T6	1	248551230	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	148807	248551230	699391	336	152746											
OR2T1	26696	broad.mit.edu	37	chr1	248569919	248569919	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctctttggatggcttcctCctaacccccatcaccatgag	8	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248569919	A	A	248569919	2	1	191	1	0	0	0	0	0	0	0	1	11110	842	30	3		3	OR2T1	1	248569919	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	18689	248569919	680702	337	152747											
OR2T1	26696	broad.mit.edu	37	chr1	248570181	248570181	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacttgctcatcccacatgActgtggtgtccttgttctac	7	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248570181	C	C	248570181	3	2	191	1	0	0	0	0	1	0	0	0	11110	275	10	5	888	5	OR2T1	1	248570181	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	262	248570181	680440	338	152748											
OR2G6	391211	broad.mit.edu	37	chr1	248685080	248685080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttctggggaacactgccCtcatactagtatgttgtctg	10	11	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248685080	A	A	248685080	3	1	191	1	0	0	0	0	1	0	0	0	11094	681	24	2	135	2	OR2G6	1	248685080	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	114899	248685080	565541	339	152749											
OR2T11	127077	broad.mit.edu	37	chr1	248789791	248789791	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaagatgagggagtaggaAgtggagatgatagagatggg	18	1	0	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248789791	T	T	248789791	2	4	191	1	0	0	0	0	0	0	0	1	11112	59	3	5		5	OR2T11	1	248789791	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	104711	248789791	460830	340	152750											
OR2T27	403239	broad.mit.edu	37	chr1	248814155	248814155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaacccagaaggataaagtCggcatacacggaataattgc	9	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248814155	A	A	248814155	3	1	191	1	0	0	0	0	1	0	0	0	11115	884	31	3	925	3	OR2T27	1	248814155	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	24364	248814155	436466	341	152751											
PXDN	7837	broad.mit.edu	37	chr2	1648339	1648339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcttctcctctggagtcCctaagaaggtggcttaggag	12	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1648339	A	A	1648339	1	1	191	0	1	0	0	0	0	0	0	0	12955	638	22	2		2	PXDN	2	1648339	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08		1648339	241551034	342	152752											
MYT1L	23040	broad.mit.edu	37	chr2	1926489	1926489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgttcatgttctgctgcGgattcctctcctgcgggttg	13	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1926489	T	T	1926489	3	4	191	1	0	0	0	0	1	0	0	0	10201	1116	39	1	2566	1	MYT1L	2	1926489	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	278150	1926489	241272884	343	152753											
RSAD2	91543	broad.mit.edu	37	chr2	7030450	7030450	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttggtgcctgaatctaaCcagaaggttgtataaagcaa	10	7	1	2	rs139075974	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7030450	A	A	7030450	3	1	191	1	0	0	0	0	1	0	0	0	13806	506	18	3	896	3	RSAD2	2	7030450	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5103961	7030450	236168923	344	152754											
KIDINS220	57498	broad.mit.edu	37	chr2	8891728	8891728	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttatatctccatcaatttCaagaagtggctcaacatcct	4	11	5	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8891728	T	T	8891728	3	4	191	1	0	0	0	0	1	0	0	0	8341	835	29	4	2289	4	KIDINS220	2	8891728	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1861278	8891728	234307645	345	152755											
PDIA6	10130	broad.mit.edu	37	chr2	10929171	10929171	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaacacctaaaggtaagcTggcaaacaagaccttcgcac	7	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10929171	A	A	10929171	1	1	191	0	1	0	0	0	0	0	0	0	11766	1595	55	5		5	PDIA6	2	10929171	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2037443	10929171	232270202	346	152756											
NBAS	51594	broad.mit.edu	37	chr2	15506615	15506615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagctgttcttctgacgCtgtaagcacatattctgcta	7	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15506615	A	A	15506615	1	1	191	0	1	0	0	0	0	0	0	0	10280	812	28	3		3	NBAS	2	15506615	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4577444	15506615	227692758	347	152757											
VSNL1	7447	broad.mit.edu	37	chr2	17836575	17836575	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatggataagaacaaagatGaccagattacactggatgaa	10	5	0	6			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17836575	A	A	17836575	3	1	191	1	0	0	0	0	1	0	0	0	17354	1290	45	4	500	4	VSNL1	2	17836575	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2329960	17836575	225362798	348	152758											
SMC6	79677	broad.mit.edu	37	chr2	17897437	17897437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagctggaacattagggcCaaatcttttgagtcgatcag	11	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17897437	A	A	17897437	3	1	191	1	0	0	0	0	1	0	0	0	14901	594	21	2	1890	2	SMC6	2	17897437	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	60862	17897437	225301936	349	152759											
SMC6	79677	broad.mit.edu	37	chr2	17913206	17913206	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaattacaatactaggttgCcacagttttcaaatttttca	5	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17913206	T	T	17913206	1	4	191	0	1	0	0	0	0	0	0	0	14901	754	26	4		4	SMC6	2	17913206	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	15769	17913206	225286167	350	152760											
KCNS3	3790	broad.mit.edu	37	chr2	18112229	18112229	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttccaggtgcagcctgatCttcctcttctcccttgccag	7	16	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18112229	T	T	18112229	1	4	191	0	1	0	0	0	0	0	0	0	8160	928	32	4		4	KCNS3	2	18112229	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	199023	18112229	225087144	351	152761											
PUM2	23369	broad.mit.edu	37	chr2	20463123	20463123	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggaaagagctggctgcTggagctaaatagactggaag	16	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20463123	G	G	20463123	3	3	191	1	0	0	0	0	1	0	0	0	12934	1580	55	5	1170	5	PUM2	2	20463123	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2350894	20463123	222736250	352	152762											
APOB	338	broad.mit.edu	37	chr2	21227105	21227105	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccccaattctccactcgCtcttgggggcgtgtcactca	9	16	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21227105	T	T	21227105	1	4	191	0	1	0	0	0	0	0	0	0	787	812	28	4		4	APOB	2	21227105	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	763982	21227105	221972268	353	152763											
APOB	338	broad.mit.edu	37	chr2	21227527	21227527	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaggctaacgtaccatcttCgattttgtgtgttcccaaaa	8	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21227527	T	T	21227527	3	4	191	1	0	0	0	0	1	0	0	0	787	893	31	4	1894	4	APOB	2	21227527	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	422	21227527	221971846	354	152764											
APOB	338	broad.mit.edu	37	chr2	21230966	21230966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatttccatgacccttttCcagaagaagtccatgctatg	6	13	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21230966	A	A	21230966	3	1	191	1	0	0	0	0	1	0	0	0	787	855	30	3	4933	3	APOB	2	21230966	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3439	21230966	221968407	355	152765											
APOB	338	broad.mit.edu	37	chr2	21234459	21234459	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaagtccagtgataagcCtgcaatgttcagactgtttg	11	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21234459	T	T	21234459	3	4	191	1	0	0	0	0	1	0	0	0	787	681	24	4	8426	4	APOB	2	21234459	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3493	21234459	221964914	356	152766											
APOB	338	broad.mit.edu	37	chr2	21246575	21246575	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctctccaatctgtagacccAacaagggagagcaaataaaa	7	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21246575	T	T	21246575	1	4	191	0	1	0	0	0	0	0	0	0	787	145	5	5		5	APOB	2	21246575	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	12116	21246575	221952798	357	152767											
ASXL2	55252	broad.mit.edu	37	chr2	25991666	25991666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtctttagtgagagatgCtggttggaggagatggatat	15	3	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25991666	A	A	25991666	3	1	191	1	0	0	0	0	1	0	0	0	1071	796	28	3	3759	3	ASXL2	2	25991666	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4745091	25991666	217207707	358	152768											
KIF3C	3797	broad.mit.edu	37	chr2	26152180	26152180	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggaggtactgaccaggatCtggactttcggactttagac	12	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26152180	A	A	26152180	3	1	191	1	0	0	0	0	1	0	0	0	8372	913	32	3	107	3	KIF3C	2	26152180	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	160514	26152180	217047193	359	152769											
OTOF	9381	broad.mit.edu	37	chr2	26699016	26699016	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtagaccaggctgacgGgtgggaaggcatgcaggccc	18	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26699016	T	T	26699016	3	4	191	1	0	0	0	0	1	0	0	0	11397	1232	43	2	3428	2	OTOF	2	26699016	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	546836	26699016	216500357	360	152770											
OTOF	9381	broad.mit.edu	37	chr2	26706330	26706330	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacctcataccccagtacCttctggccagcaaagaagac	7	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26706330	T	T	26706330	2	4	191	1	0	0	0	0	0	0	0	1	11397	695	24	4		4	OTOF	2	26706330	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	7314	26706330	216493043	361	152771											
CAD	790	broad.mit.edu	37	chr2	27448142	27448142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgggtaaaggaagaatGgtggtgttttttttggtagt	15	0	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27448142	T	T	27448142	1	4	191	0	1	0	0	0	0	0	0	0	2591	1363	47	2		2	CAD	2	27448142	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	741812	27448142	215751231	362	152772											
ZNF512	84450	broad.mit.edu	37	chr2	27825867	27825867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggaagggttgtgctgatGggagatgttggagagggtct	19	3	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27825867	T	T	27825867	1	4	191	0	1	0	0	0	0	0	0	0	18083	1363	47	2		2	ZNF512	2	27825867	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	377725	27825867	215373506	363	152773											
PLB1	151056	broad.mit.edu	37	chr2	28789741	28789741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccgggatgtttggtttGgggcggcccctgcacgcttc	17	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28789741	T	T	28789741	1	4	191	0	1	0	0	0	0	0	0	0	12119	1363	47	2		2	PLB1	2	28789741	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	963874	28789741	214409632	364	152774											
PLB1	151056	broad.mit.edu	37	chr2	28789843	28789843	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaccagggggcgctgcctCccgagactgccgcccagctc	12	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28789843	T	T	28789843	1	4	191	0	1	0	0	0	0	0	0	0	12119	870	30	4		4	PLB1	2	28789843	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	102	28789843	214409530	365	152775											
PLB1	151056	broad.mit.edu	37	chr2	28816594	28816594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacgacctccccgatgtcaCcacacagtatcggggactgt	10	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28816594	A	A	28816594	3	1	191	1	0	0	0	0	1	0	0	0	12119	507	18	3	2457	3	PLB1	2	28816594	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	26751	28816594	214382779	366	152776											
ALK	238	broad.mit.edu	37	chr2	29416528	29416528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagaatgccatattcacGtgtcccccttccacggccgg	10	14	1	2	rs139039449		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29416528	T	T	29416528	3	4	191	1	0	0	0	0	1	0	0	0	525	1136	40	3	441	3	ALK	2	29416528	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	599934	29416528	213782845	367	152777											
ALK	238	broad.mit.edu	37	chr2	29450489	29450489	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggactgatgaaggaaacCccatcttccccatccatttc	7	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29450489	A	A	29450489	2	1	191	1	0	0	0	0	0	0	0	1	525	610	22	2		2	ALK	2	29450489	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	33961	29450489	213748884	368	152778											
ALK	238	broad.mit.edu	37	chr2	29917834	29917834	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgaggtcatgcagtggAggggaatactccagctcaca	12	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29917834	T	T	29917834	2	4	191	1	0	0	0	0	0	0	0	1	525	291	11	5		5	ALK	2	29917834	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	467345	29917834	213281539	369	152779											
CAPN13	92291	broad.mit.edu	37	chr2	30953540	30953540	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatgtgcagttcttagagGggaaggaggactcatgctcc	13	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30953540	A	A	30953540	1	1	191	0	1	0	0	0	0	0	0	0	2652	1247	43	4		4	CAPN13	2	30953540	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1035706	30953540	212245833	370	152780											
XDH	7498	broad.mit.edu	37	chr2	31591561	31591561	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agactgttaaagaacgcaacCaggctcatggtgaaacaaat	9	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31591561	G	G	31591561	1	3	191	0	1	0	0	0	0	0	0	0	17553	609	21	4		4	XDH	2	31591561	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	638021	31591561	211607812	371	152781											
XDH	7498	broad.mit.edu	37	chr2	31599964	31599964	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagggctgagatggttctgTtggccattccaccatagcaa	12	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31599964	G	G	31599964	3	3	191	1	0	0	0	0	1	0	0	0	17553	1725	60	5	2711	5	XDH	2	31599964	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	8403	31599964	211599409	372	152782											
TTC27	55622	broad.mit.edu	37	chr2	32958990	32958990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcactgggccattcaGgtatttctgttgtttgtcat	8	11	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32958990	T	T	32958990	3	4	191	1	0	0	0	0	1	0	0	0	16821	1014	35	2	1371	2	TTC27	2	32958990	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1359026	32958990	210240383	373	152783											
LTBP1	4052	broad.mit.edu	37	chr2	33500076	33500076	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacctctgctcccagggcCgctgtgaaaacaccgaggga	11	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33500076	A	A	33500076	3	1	191	1	0	0	0	0	1	0	0	0	9160	652	23	1	2909	1	LTBP1	2	33500076	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	541086	33500076	209699297	374	152784											
HEATR5B	54497	broad.mit.edu	37	chr2	37280682	37280682	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcagtaaatatgttaagcTgcacagcctgctggcggaca	11	10	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37280682	A	A	37280682	3	1	191	1	0	0	0	0	1	0	0	0	7099	1580	55	5	3827	5	HEATR5B	2	37280682	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	3780606	37280682	205918691	375	152785											
HEATR5B	54497	broad.mit.edu	37	chr2	37280747	37280747	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagtgatccaacatttgTaatctataacaataagaaaa	5	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37280747	G	G	37280747	3	3	191	1	0	0	0	0	1	0	0	0	7099	1635	57	5	3892	5	HEATR5B	2	37280747	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	65	37280747	205918626	376	152786											
TMEM178	130733	broad.mit.edu	37	chr2	39944445	39944445	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcctgaggggaacagcgcGgagttcaggagtccaagcac	14	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39944445	T	T	39944445	1	4	191	0	1	0	0	0	0	0	0	0	16218	1131	39	1		1	TMEM178	2	39944445	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	2663698	39944445	203254928	377	152787											
SLC8A1	6546	broad.mit.edu	37	chr2	40366863	40366863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcacaacctgtgttgccGggtcttcctctctctcaatc	6	15	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40366863	T	T	40366863	1	4	191	0	1	0	0	0	0	0	0	0	14820	1131	39	1		1	SLC8A1	2	40366863	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	422418	40366863	202832510	378	152788											
SLC8A1	6546	broad.mit.edu	37	chr2	40397428	40397428	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaatgagtacctgcaatGgtgattacagtagagagaat	11	4	0	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40397428	T	T	40397428	2	4	191	1	0	0	0	0	0	0	0	1	14820	1335	47	2		2	SLC8A1	2	40397428	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	30565	40397428	202801945	379	152789											
SLC8A1	6546	broad.mit.edu	37	chr2	40656313	40656313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccagctccagtcatgaggcGagtagcttgaatgcgataaa	12	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40656313	T	T	40656313	3	4	191	1	0	0	0	0	1	0	0	0	14820	1058	37	3	1961	3	SLC8A1	2	40656313	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	258885	40656313	202543060	380	152790											
SLC8A1	6546	broad.mit.edu	37	chr2	40656998	40656998	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggagcagaagatcccagGgccatcaaggtcaggttaga	13	9	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40656998	C	C	40656998	2	2	191	1	0	0	0	0	0	0	0	1	14820	1219	43	4		4	SLC8A1	2	40656998	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	685	40656998	202542375	381	152791											
PLEKHH2	130271	broad.mit.edu	37	chr2	43927793	43927793	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atacgcagtagtttttttctCaacactttttttttctggga	6	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43927793	G	G	43927793	1	3	191	0	1	0	0	0	0	0	0	0	12172	841	29	4		4	PLEKHH2	2	43927793	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3270795	43927793	199271580	382	152792											
PRKCE	5581	broad.mit.edu	37	chr2	46378245	46378245	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgggggtgctgatgtacgaGatgatggctggacagcctcc	16	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46378245	A	A	46378245	2	1	191	1	0	0	0	0	0	0	0	1	12617	933	33	4		4	PRKCE	2	46378245	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2450452	46378245	196821128	383	152793											
FSHR	2492	broad.mit.edu	37	chr2	49190937	49190937	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagcaggtcacgtcaacCacttcattgcataagtcata	10	10	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49190937	T	T	49190937	2	4	191	1	0	0	0	0	0	0	0	1	6133	581	21	4		4	FSHR	2	49190937	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2812692	49190937	194008436	384	152794											
NRXN1	9378	broad.mit.edu	37	chr2	50765423	50765423	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgccaagatagcctgttCcggaacaatcacagacatat	7	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50765423	A	A	50765423	3	1	191	1	0	0	0	0	1	0	0	0	10760	855	30	3	2731	3	NRXN1	2	50765423	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1574486	50765423	192433950	385	152795											
PSME4	23198	broad.mit.edu	37	chr2	54149743	54149743	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaaacagcaaaatactatTagggggaaaaacctatgcat	7	6	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54149743	A	A	54149743	1	1	191	0	1	0	0	0	0	0	0	0	12815	1769	61	5		5	PSME4	2	54149743	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	3384320	54149743	189049630	386	152796											
BCL11A	53335	broad.mit.edu	37	chr2	60689034	60689035	+	Missense_Mutation	DNP	GG	AA	AA													gttgcagtaacctttgcataGggctgggccggcctggggac							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	60689035	AA	AA	60689034	3	1	191	1	0	0	0	0	1	0	0	0	1368	1000	35	4	1604	4	BCL11A	2	60689034	Missense_Mutation	DNP	GG	TCGA-64-5781-01A-01D-1625-08	6539291	60689034	182510339	387	152797											
USP34	9736	broad.mit.edu	37	chr2	61558393	61558393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacacaaatgtatttaaccCagttgagaggtacttacagt	8	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61558393	A	A	61558393	1	1	191	0	1	0	0	0	0	0	0	0	17192	609	21	2		2	USP34	2	61558393	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	869359	61558393	181640980	388	152798											
PLEK	5341	broad.mit.edu	37	chr2	68607577	68607577	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatcccgctgaaagggagcActctgactagcccttgtcaa	10	12	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68607577	T	T	68607577	3	4	191	1	0	0	0	0	1	0	0	0	12148	159	6	5	166	5	PLEK	2	68607577	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	7049184	68607577	174591796	389	152799											
ARHGAP25	9938	broad.mit.edu	37	chr2	69009461	69009461	+	Intron	DEL	C	-	-													aaatcattccaggtaggccaCcacaggtaggacagaggtgc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69009461	-	-	69009461	6	5	191	0	1	1	0	1	0	0	0	0	876	522	18	0		0	ARHGAP25	2	69009461	Intron	DEL	C	TCGA-64-5781-01A-01D-1625-08	401884	69009461	174189912	390	152800											
ARHGAP25	9938	broad.mit.edu	37	chr2	69046344	69046344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatatacccctgtcacccCctgcccagaaaaatgacccc	6	17	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69046344	A	A	69046344	3	1	191	1	0	0	0	0	1	0	0	0	876	623	22	2	1167	2	ARHGAP25	2	69046344	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	36883	69046344	174153029	391	152801											
GFPT1	2673	broad.mit.edu	37	chr2	69586323	69586323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatatggtgtttgttgcaCatcccaacaaccgaccccag	7	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69586323	T	T	69586323	1	4	191	0	1	0	0	0	0	0	0	0	6409	493	17	4		4	GFPT1	2	69586323	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	539979	69586323	173613050	392	152802											
TIA1	7072	broad.mit.edu	37	chr2	70443655	70443655	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgagagaaaaggtttatgtCtttaattcattaaataaaat	7	2	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70443655	T	T	70443655	1	4	191	0	1	0	0	0	0	0	0	0	16010	928	32	4		4	TIA1	2	70443655	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	857332	70443655	172755718	393	152803											
SLC4A5	57835	broad.mit.edu	37	chr2	74479239	74479239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatggttgggaaaagtcccTagagggcagctgagaaggga	16	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74479239	C	C	74479239	1	2	191	0	1	0	0	0	0	0	0	0	14771	1537	53	5		5	SLC4A5	2	74479239	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	4035584	74479239	168720134	394	152804											
DCTN1	1639	broad.mit.edu	37	chr2	74594431	74594431	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctcttgacctgatgccctCcatttctgatctccacgggg	8	14	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74594431	A	A	74594431	1	1	191	0	1	0	0	0	0	0	0	0	4339	870	30	3		3	DCTN1	2	74594431	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	115192	74594431	168604942	395	152805											
LOXL3	84695	broad.mit.edu	37	chr2	74764011	74764011	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctccgtgcccacgcacgccAccccatgcagaccaaaggag	9	19	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74764011	T	T	74764011	3	4	191	1	0	0	0	0	1	0	0	0	8988	159	6	5	1564	5	LOXL3	2	74764011	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	169580	74764011	168435362	396	152806											
DOK1	1796	broad.mit.edu	37	chr2	74783136	74783136	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actctcctgaccgtgggggcCcagagtcagatactggagcc	13	13	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74783136	T	T	74783136	2	4	191	1	0	0	0	0	0	0	0	1	4736	610	22	4		4	DOK1	2	74783136	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	19125	74783136	168416237	397	152807											
C2orf65	130951	broad.mit.edu	37	chr2	74842036	74842036	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagatgataaacaatgaccTatatggactgaaatcggaac	8	6	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74842036	A	A	74842036	1	1	191	0	1	0	0	0	0	0	0	0	2206	1537	53	5		5	C2orf65	2	74842036	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	58900	74842036	168357337	398	152808											
LRRTM4	80059	broad.mit.edu	37	chr2	77746810	77746810	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgataagccttgtgacCctccagaaatgttctcaggg	9	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77746810	A	A	77746810	3	1	191	1	0	0	0	0	1	0	0	0	9129	623	22	2	1601	2	LRRTM4	2	77746810	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2904774	77746810	165452563	399	152809											
REG1A	5967	broad.mit.edu	37	chr2	79348047	79348047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgtttctgtctcagagCcaaggtaagatctcttttcc	8	10	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79348047	A	A	79348047	3	1	191	1	0	0	0	0	1	0	0	0	13318	738	26	3	62	3	REG1A	2	79348047	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1601237	79348047	163851326	400	152810											
REG1A	5967	broad.mit.edu	37	chr2	79348453	79348453	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtagaagagcctgagctCcagacataaaagggaaactg	12	7	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79348453	A	A	79348453	1	1	191	0	1	0	0	0	0	0	0	0	13318	870	30	3		3	REG1A	2	79348453	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	406	79348453	163850920	401	152811											
REG1A	5967	broad.mit.edu	37	chr2	79350261	79350261	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcccagttgtaactcttctCattgacttataggattccag	6	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79350261	T	T	79350261	1	4	191	0	1	0	0	0	0	0	0	0	13318	841	29	4		4	REG1A	2	79350261	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1808	79350261	163849112	402	152812											
REG3A	5068	broad.mit.edu	37	chr2	79384867	79384867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaagggaatggccattGcagctcttcttgcatggccc	13	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79384867	T	T	79384867	1	4	191	0	1	0	0	0	0	0	0	0	13320	1334	46	3		3	REG3A	2	79384867	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	34606	79384867	163814506	403	152813											
REG3A	5068	broad.mit.edu	37	chr2	79385498	79385498	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacgtatgagtagctgttaCcaatgctcttcaccagggag	11	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79385498	G	G	79385498	3	3	191	1	0	0	0	0	1	0	0	0	13320	507	18	4	252	4	REG3A	2	79385498	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	631	79385498	163813875	404	152814											
REG3A	5068	broad.mit.edu	37	chr2	79385742	79385742	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaccctcctccccctgagAccggtcacctccaacaccac	6	21	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79385742	G	G	79385742	1	3	191	0	1	0	0	0	0	0	0	0	13320	290	10	5		5	REG3A	2	79385742	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	244	79385742	163813631	405	152815											
CTNNA2	1496	broad.mit.edu	37	chr2	80875022	80875022	+	3'UTR	DEL	T	-	-													ataggttttaacaagaaagcTttttctttcttttctttctt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80875022	-	-	80875022	6	5	191	0	1	1	0	1	0	0	0	0	4047	1624	56	0		0	CTNNA2	2	80875022	3'UTR	DEL	T	TCGA-64-5781-01A-01D-1625-08	1489280	80875022	162324351	406	152816											
KCMF1	56888	broad.mit.edu	37	chr2	85276557	85276557	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaattcctctggcccttccGcttctcagttacaacaactg	5	14	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85276557	A	A	85276557	3	1	191	1	0	0	0	0	1	0	0	0	8070	1087	38	4	692	4	KCMF1	2	85276557	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4401535	85276557	157922816	407	152817											
EIF2AK3	9451	broad.mit.edu	37	chr2	88913343	88913343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaggcagcaattctccCatctaaagtgctgataatta	6	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88913343	A	A	88913343	3	1	191	1	0	0	0	0	1	0	0	0	5038	594	21	2	3077	2	EIF2AK3	2	88913343	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3636786	88913343	154286030	408	152818											
RPIA	22934	broad.mit.edu	37	chr2	89037542	89037542	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatcttggactggaagtttGaccgggtacacaaatggagt	12	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89037542	C	C	89037542	3	2	191	1	0	0	0	0	1	0	0	0	13664	1290	45	4	817	4	RPIA	2	89037542	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	124199	89037542	154161831	409	152819											
ASTL	431705	broad.mit.edu	37	chr2	96795703	96795703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtgggcagcccacgcCggctgaaggcgagcctggaa	17	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96795703	A	A	96795703	3	1	191	1	0	0	0	0	1	0	0	0	1067	652	23	1	568	1	ASTL	2	96795703	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	7758161	96795703	146403670	410	152820											
TMEM131	23505	broad.mit.edu	37	chr2	98414014	98414014	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaacagagaggagtcatgaAtatattctctggaagaatgt	10	4	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98414014	G	G	98414014	1	3	191	0	1	0	0	0	0	0	0	0	16167	116	4	5		5	TMEM131	2	98414014	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1618311	98414014	144785359	411	152821											
CNGA3	1261	broad.mit.edu	37	chr2	99013598	99013598	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgagtacaacgccacccaGatgaagatgaagcagcgtct	11	11	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99013598	A	A	99013598	2	1	191	1	0	0	0	0	0	0	0	1	3630	933	33	4		4	CNGA3	2	99013598	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	599584	99013598	144185775	412	152822											
REV1	51455	broad.mit.edu	37	chr2	100019053	100019053	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtctgtttatgttctcaaAtcatgagacgactacatctc	6	9	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100019053	G	G	100019053	1	3	191	0	1	0	0	0	0	0	0	0	13347	116	4	5		5	REV1	2	100019053	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1005455	100019053	143180320	413	152823											
IL1R2	7850	broad.mit.edu	37	chr2	102626230	102626230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgtgggcccaggacggtGctctgtggcttctgccagcc	16	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102626230	T	T	102626230	3	4	191	1	0	0	0	0	1	0	0	0	7729	1319	46	3	280	3	IL1R2	2	102626230	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2607177	102626230	140573143	414	152824											
IL1R2	7850	broad.mit.edu	37	chr2	102626299	102626299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactactaggtaagtctccCtgtgcggggctggggagggg	18	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102626299	A	A	102626299	1	1	191	0	1	0	0	0	0	0	0	0	7729	696	24	2		2	IL1R2	2	102626299	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	69	102626299	140573074	415	152825											
IL1RL2	8808	broad.mit.edu	37	chr2	102849440	102849440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgggaagctgtatgacGcctatgtcttataccccaag	10	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102849440	T	T	102849440	3	4	191	1	0	0	0	0	1	0	0	0	7734	1087	38	3	1187	3	IL1RL2	2	102849440	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	223141	102849440	140349933	416	152826											
NCK2	8440	broad.mit.edu	37	chr2	106498470	106498470	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcaacgagcggggcgtgGagggcgacttcctcattagg	15	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106498470	T	T	106498470	4	4	191	1	0	0	0	0	0	1	0	0	10315	1175	41	3	919	3	NCK2	2	106498470	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3649030	106498470	136700903	417	152827											
UXS1	80146	broad.mit.edu	37	chr2	106729029	106729029	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgaaccaagatgcacTtatccctcatcctttgtgag	6	14	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106729029	C	C	106729029	1	2	191	0	1	0	0	0	0	0	0	0	17236	1624	56	5		5	UXS1	2	106729029	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	230559	106729029	136470344	418	152828											
SLC5A7	60482	broad.mit.edu	37	chr2	108626831	108626831	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttacatcgttatcttcccCcagctgctttgtgtactctt	6	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108626831	A	A	108626831	2	1	191	1	0	0	0	0	0	0	0	1	14784	610	22	2		2	SLC5A7	2	108626831	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1897802	108626831	134572542	419	152829											
SULT1C3	442038	broad.mit.edu	37	chr2	108881755	108881755	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaagaatttgacaaggActaccagaagaagatggcag	11	5	0	6			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108881755	T	T	108881755	3	4	191	1	0	0	0	0	1	0	0	0	15496	275	10	5	889	5	SULT1C3	2	108881755	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	254924	108881755	134317618	420	152830											
SEPT10	151011	broad.mit.edu	37	chr2	110350700	110350700	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgagactgaaagagctaAaaaaggaatacaaaggctta	10	4	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110350700	C	C	110350700	1	2	191	0	1	0	0	0	0	0	0	0	14173	29	1	5		5	SEPT10	2	110350700	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1468945	110350700	132848673	421	152831											
BUB1	699	broad.mit.edu	37	chr2	111431838	111431838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgttaattttccatggggCagtgtatagtttgtttaagg	11	3	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111431838	A	A	111431838	1	1	191	0	1	0	0	0	0	0	0	0	1580	725	25	3		3	BUB1	2	111431838	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1081138	111431838	131767535	422	152832											
IL1F9	56300	broad.mit.edu	37	chr2	113737683	113737683	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaatccagaaatgtgtttGtattgtgagaaggttggaga	13	3	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113737683	C	C	113737683	3	2	191	1	0	0	0	0	1	0	0	0	7727	1368	48	4	268	4	IL1F9	2	113737683	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2305845	113737683	129461690	423	152833											
FOXD4L1	200350	broad.mit.edu	37	chr2	114256807	114256807	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgatcggccgccacatcCcctgcgactgaagcacctgc	11	16	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114256807	T	T	114256807	1	4	191	0	1	0	0	0	0	0	0	0	6058	638	22	4		4	FOXD4L1	2	114256807	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	519124	114256807	128942566	424	152834											
DPP10	57628	broad.mit.edu	37	chr2	116447425	116447425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttttcaagggaagtttgGgagttaaatcctccagaagt	10	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116447425	T	T	116447425	3	4	191	1	0	0	0	0	1	0	0	0	4767	1241	43	2	701	2	DPP10	2	116447425	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2190618	116447425	126751948	425	152835											
MARCO	8685	broad.mit.edu	37	chr2	119731947	119731947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccatgggcatgcctggtGcccctggcccgccgggacca	16	16	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119731947	T	T	119731947	3	4	191	1	0	0	0	0	1	0	0	0	9403	1319	46	3	517	3	MARCO	2	119731947	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3284522	119731947	123467426	426	152836											
MARCO	8685	broad.mit.edu	37	chr2	119752009	119752009	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcagtgtcggggcacggaGagtaccctgtggagctgcac	16	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119752009	T	T	119752009	3	4	191	1	0	0	0	0	1	0	0	0	9403	933	33	3	1542	3	MARCO	2	119752009	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	20062	119752009	123447364	427	152837											
RALB	5899	broad.mit.edu	37	chr2	121050904	121050904	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttggtaaagagaaggctAtggttgacttcttgcttgtg	15	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121050904	G	G	121050904	1	3	191	0	1	0	0	0	0	0	0	0	13119	464	16	5		5	RALB	2	121050904	3'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	1298895	121050904	122148469	428	152838											
CNTNAP5	129684	broad.mit.edu	37	chr2	125281976	125281976	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaagcagcacccccggCtccagacagcacttgggtgc	12	14	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125281976	A	A	125281976	3	1	191	1	0	0	0	0	1	0	0	0	3682	797	28	3	1455	3	CNTNAP5	2	125281976	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4231072	125281976	117917397	429	152839											
GYPC	2995	broad.mit.edu	37	chr2	127447909	127447909	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagttctcatcacagagccTcaccataatggaaactgccg	8	12	3	2	rs56350875		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127447909	A	A	127447909	1	1	191	0	1	0	0	0	0	0	0	0	6975	1566	54	5		5	GYPC	2	127447909	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2165933	127447909	115751464	430	152840											
BIN1	274	broad.mit.edu	37	chr2	127806096	127806096	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccggaggctgcctgggccCcgccgtcatgggaccctctc	14	18	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127806096	T	T	127806096	1	4	191	0	1	0	0	0	0	0	0	0	1438	638	22	4		4	BIN1	2	127806096	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	358187	127806096	115393277	431	152841											
CCDC74B	91409	broad.mit.edu	37	chr2	130899608	130899608	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatcctggagcttggccCagcagagggtacctggtcag	13	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130899608	A	A	130899608	1	1	191	0	1	0	0	0	0	0	0	0	2876	609	21	2		2	CCDC74B	2	130899608	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3093512	130899608	112299765	432	152842											
IMP4	92856	broad.mit.edu	37	chr2	131102277	131102277	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggagtttgatgatgctgGaggtgaaggtaactatacaa	13	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131102277	T	T	131102277	3	4	191	1	0	0	0	0	1	0	0	0	7790	1174	41	3	198	3	IMP4	2	131102277	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	202669	131102277	112097096	433	152843											
PLEKHB2	55041	broad.mit.edu	37	chr2	131935267	131935267	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttgagcccgcagctgggcAgcatgaagcatgaagcaagg	15	10	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131935267	T	T	131935267	1	4	191	0	1	0	0	0	0	0	0	0	12160	203	7	5		5	PLEKHB2	2	131935267	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	832990	131935267	111264106	434	152844											
POTEE	445582	broad.mit.edu	37	chr2	132021506	132021506	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagatcatgtttgagacCttcaacaccccagccatgta	6	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132021506	A	A	132021506	2	1	191	1	0	0	0	0	0	0	0	1	12360	668	24	2		2	POTEE	2	132021506	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	86239	132021506	111177867	435	152845											
GPR39	2863	broad.mit.edu	37	chr2	133174567	133174567	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggacgctgctgggaggagaAagggaagttgagaaagtctt	17	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133174567	T	T	133174567	1	4	191	0	1	0	0	0	0	0	0	0	6758	29	1	5		5	GPR39	2	133174567	5'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	1153061	133174567	110024806	436	152846											
NCKAP5	344148	broad.mit.edu	37	chr2	133541199	133541199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agatcctgggagtctgtaatCctatgtccctttgtggggtc	12	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133541199	A	A	133541199	3	1	191	1	0	0	0	0	1	0	0	0	10318	855	30	3	2572	3	NCKAP5	2	133541199	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	366632	133541199	109658174	437	152847											
CCNT2	905	broad.mit.edu	37	chr2	135711659	135711659	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaaggcagtgggaagaGcaaacattcaagcccacata	11	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135711659	A	A	135711659	3	1	191	1	0	0	0	0	1	0	0	0	2965	971	34	4	1668	4	CCNT2	2	135711659	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2170460	135711659	107487714	438	152848											
UBXN4	23190	broad.mit.edu	37	chr2	136505764	136505764	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatattttatttgaggtttcCgttttccaggggaaaagagt	10	4	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136505764	T	T	136505764	1	4	191	0	1	0	0	0	0	0	0	0	17042	667	23	4		4	UBXN4	2	136505764	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	794105	136505764	106693609	439	152849											
MCM6	4175	broad.mit.edu	37	chr2	136598469	136598469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcttcatagctctcacttCcctctgtggagcctttcaat	5	14	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136598469	T	T	136598469	3	4	191	1	0	0	0	0	1	0	0	0	9484	855	30	4	67	4	MCM6	2	136598469	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	92705	136598469	106600904	440	152850											
THSD7B	80731	broad.mit.edu	37	chr2	137928425	137928425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtgctaccgatggctggCatcagaagggatctgtttcc	12	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137928425	A	A	137928425	3	1	191	1	0	0	0	0	1	0	0	0	16003	710	25	3	1569	3	THSD7B	2	137928425	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1329956	137928425	105270948	441	152851											
THSD7B	80731	broad.mit.edu	37	chr2	138400070	138400071	+	Missense_Mutation	DNP	GG	TT	TT													cattttaggtcgaatgagccGgactcgatttatcattatgc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	138400071	TT	TT	138400070	3	4	191	1	0	0	0	0	1	0	0	0	16003	1116	39	1	3802	1	THSD7B	2	138400070	Missense_Mutation	DNP	GG	TCGA-64-5781-01A-01D-1625-08	471645	138400070	104799303	442	152852											
LRP1B	53353	broad.mit.edu	37	chr2	141356323	141356323	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtatgtctgtactgacCaccacttgagcatttttccc	8	11	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141356323	A	A	141356323	2	1	191	1	0	0	0	0	0	0	0	1	9042	581	21	2		2	LRP1B	2	141356323	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2956253	141356323	101843050	443	152853											
ARHGAP15	55843	broad.mit.edu	37	chr2	144245132	144245132	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctctgtgttcatagctaatCagctctaaaggaatattaga	7	8	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144245132	T	T	144245132	1	4	191	0	1	0	0	0	0	0	0	0	868	841	29	4		4	ARHGAP15	2	144245132	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2888809	144245132	98954241	444	152854											
RIF1	55183	broad.mit.edu	37	chr2	152293374	152293374	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacggagccccgggaactcCccgaatgaacctgagttcga	12	13	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152293374	T	T	152293374	3	4	191	1	0	0	0	0	1	0	0	0	13468	623	22	4	1271	4	RIF1	2	152293374	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	8048242	152293374	90905999	445	152855											
NEB	4703	broad.mit.edu	37	chr2	152426643	152426643	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgaatcacatcgttctgGtcgggcatgcaggtccactg	12	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152426643	A	A	152426643	2	1	191	1	0	0	0	0	0	0	0	1	10397	1252	44	4		4	NEB	2	152426643	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	133269	152426643	90772730	446	152856											
NR4A2	4929	broad.mit.edu	37	chr2	157183359	157183359	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgatctccatggagccaGtcaggagatcatagaattgc	12	8	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157183359	A	A	157183359	3	1	191	1	0	0	0	0	1	0	0	0	10728	1029	36	4	576	4	NR4A2	2	157183359	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4756716	157183359	86016014	447	152857											
CCDC148	130940	broad.mit.edu	37	chr2	159107534	159107534	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtcactttttttccaaaTaaatgtttaaattctatgtg	5	5	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159107534	C	C	159107534	1	2	191	0	1	0	0	0	0	0	0	0	2808	1421	49	5		5	CCDC148	2	159107534	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1924175	159107534	84091839	448	152858											
FAP	2191	broad.mit.edu	37	chr2	163059565	163059565	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtaccacagtgtctttgaTatagtgaatatgtttgtagc	9	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163059565	C	C	163059565	3	2	191	1	0	0	0	0	1	0	0	0	5730	1406	49	5	1200	5	FAP	2	163059565	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	3952031	163059565	80139808	449	152859											
KCNH7	90134	broad.mit.edu	37	chr2	163369192	163369192	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcgaccattgtctgttttGagcacataaggataaaaaaa	8	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163369192	T	T	163369192	1	4	191	0	1	0	0	0	0	0	0	0	8107	1305	45	3		3	KCNH7	2	163369192	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	309627	163369192	79830181	450	152860											
SLC38A11	151258	broad.mit.edu	37	chr2	165765220	165765220	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctacagtgatgaccatcActgttacaacaatgtggaaa	9	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165765220	T	T	165765220	3	4	191	1	0	0	0	0	1	0	0	0	14717	159	6	5	371	5	SLC38A11	2	165765220	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2396028	165765220	77434153	451	152861											
SCN3A	6328	broad.mit.edu	37	chr2	165956856	165956856	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcttagaggtcttaaagCtcttaatgtccgtaatgatt	9	7	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165956856	T	T	165956856	3	4	191	1	0	0	0	0	1	0	0	0	14031	797	28	4	2108	4	SCN3A	2	165956856	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	191636	165956856	77242517	452	152862											
SCN2A	6326	broad.mit.edu	37	chr2	166245431	166245431	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctttggcaacagcatgatCtgcctgttccaaattacaac	6	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166245431	A	A	166245431	2	1	191	1	0	0	0	0	0	0	0	1	14029	903	32	3		3	SCN2A	2	166245431	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	288575	166245431	76953942	453	152863											
TTC21B	79809	broad.mit.edu	37	chr2	166799738	166799738	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaactcaccttacccagCagagcaaaagtatcattccc	4	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166799738	G	G	166799738	2	3	191	1	0	0	0	0	0	0	0	1	16814	697	25	4		4	TTC21B	2	166799738	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	554307	166799738	76399635	454	152864											
SCN1A	6323	broad.mit.edu	37	chr2	166854551	166854551	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattagaaatacttatcttCtttttctgctggttgaaatt	5	5	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166854551	G	G	166854551	3	3	191	1	0	0	0	0	1	0	0	0	14027	912	32	4	1572	4	SCN1A	2	166854551	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	54813	166854551	76344822	455	152865											
XIRP2	129446	broad.mit.edu	37	chr2	167992503	167992503	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggattctgtgaaagattcaGacaagaaaggcaaggaaaca	11	5	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167992503	T	T	167992503	3	4	191	1	0	0	0	0	1	0	0	0	17557	942	33	3	499	3	XIRP2	2	167992503	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1137952	167992503	75206870	456	152866											
XIRP2	129446	broad.mit.edu	37	chr2	168101996	168101996	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attagactctattaataaatCagaaactgtgtatgttatta	5	4	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168101996	T	T	168101996	3	4	191	1	0	0	0	0	1	0	0	0	17557	838	29	4	4124	4	XIRP2	2	168101996	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	109493	168101996	75097377	457	152867											
XIRP2	129446	broad.mit.edu	37	chr2	168104699	168104699	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacaggcttaaaaatggCaatggaaaggtccttgaatc	9	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168104699	A	A	168104699	3	1	191	1	0	0	0	0	1	0	0	0	17557	710	25	3	6827	3	XIRP2	2	168104699	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2703	168104699	75094674	458	152868											
G6PC2	57818	broad.mit.edu	37	chr2	169761157	169761157	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcagtttctgtagcactgGaatatgacagtttttaatac	8	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169761157	A	A	169761157	1	1	191	0	1	0	0	0	0	0	0	0	6204	1189	41	4		4	G6PC2	2	169761157	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1656458	169761157	73438216	459	152869											
ABCB11	8647	broad.mit.edu	37	chr2	169781254	169781254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcccgagcaatagcaatGcgttgtttctcccctctaga	9	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169781254	T	T	169781254	2	4	191	1	0	0	0	0	0	0	0	1	42	1306	46	3		3	ABCB11	2	169781254	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	20097	169781254	73418119	460	152870											
DHRS9	10170	broad.mit.edu	37	chr2	169939978	169939978	+	Frame_Shift_Del	DEL	G	-	-													acactaaatatgcttcctttGgtcaagaaagctcaagggag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	169939978	-	-	169939978	7	5	191	1	0	1	0	1	0	0	0	0	4538	1339	47	0	459	0	DHRS9	2	169939978	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	158724	169939978	73259395	461	152871											
LRP2	4036	broad.mit.edu	37	chr2	170058337	170058337	+	Frame_Shift_Del	DEL	C	-	-													taagagtattggacacatcgCccattggcacaggtgaaggc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	170058337	-	-	170058337	7	5	191	1	0	1	0	1	0	0	0	0	9043	726	26	0	5858	0	LRP2	2	170058337	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	118359	170058337	73141036	462	152872											
LRP2	4036	broad.mit.edu	37	chr2	170094714	170094714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagctacaatgtaagaacCattctcgaccaatgaataga	6	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170094714	A	A	170094714	3	1	191	1	0	0	0	0	1	0	0	0	9043	594	21	2	9786	2	LRP2	2	170094714	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	36377	170094714	73104659	463	152873											
METTL5	29081	broad.mit.edu	37	chr2	170677819	170677819	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatacaaagagtggcgactTatagctcccaagtaaaaaca	7	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170677819	A	A	170677819	1	1	191	0	1	0	0	0	0	0	0	0	9596	1769	61	5		5	METTL5	2	170677819	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	583105	170677819	72521554	464	152874											
MYO3B	140469	broad.mit.edu	37	chr2	171240296	171240296	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagcagatgctgcttaccAgtgcatggttactctcagca	9	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171240296	G	G	171240296	3	3	191	1	0	0	0	0	1	0	0	0	10171	188	7	5	1308	5	MYO3B	2	171240296	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	562477	171240296	71959077	465	152875											
GAD1	2571	broad.mit.edu	37	chr2	171685942	171685942	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgaccctcaggggctgGgcagtttgcagcactctctc	12	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171685942	T	T	171685942	1	4	191	0	1	0	0	0	0	0	0	0	6239	1247	43	2		2	GAD1	2	171685942	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	445646	171685942	71513431	466	152876											
SLC25A12	8604	broad.mit.edu	37	chr2	172691217	172691217	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgctgagattcttatttaTgtatattttaaaatcttacc	4	5	2	1	rs150832118	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172691217	A	A	172691217	1	1	191	0	1	0	0	0	0	0	0	0	14588	1479	51	5		5	SLC25A12	2	172691217	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1005275	172691217	70508156	467	152877											
HAT1	8520	broad.mit.edu	37	chr2	172779027	172779027	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatggcgggtaagttacCgggaaaagtttaccaagggg	16	5	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172779027	A	A	172779027	1	1	191	0	1	0	0	0	0	0	0	0	7030	667	23	1		1	HAT1	2	172779027	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	87810	172779027	70420346	468	152878											
ITGA6	3655	broad.mit.edu	37	chr2	173352313	173352313	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgccaaccagaatggctcGcaagctgactgtgagctcgg	13	11	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173352313	T	T	173352313	2	4	191	1	0	0	0	0	0	0	0	1	7950	1074	38	3		3	ITGA6	2	173352313	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	573286	173352313	69847060	469	152879											
HOXD12	3238	broad.mit.edu	37	chr2	176964475	176964475	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgtctgagcctgtcctcttAttcccggttgtaactaaata	7	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176964475	T	T	176964475	1	4	191	0	1	0	0	0	0	0	0	0	7388	464	16	5		5	HOXD12	2	176964475	5'Flank	SNP	A	TCGA-64-5781-01A-01D-1625-08	3612162	176964475	66234898	470	152880											
TTN	7273	broad.mit.edu	37	chr2	179399169	179399169	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctgtcatgcgagatttcCtctctttcactaacaaccgg	7	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179399169	T	T	179399169	3	4	191	1	0	0	0	0	1	0	0	0	16861	681	24	4	5826	4	TTN	2	179399169	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2434694	179399169	63800204	471	152881											
TTN	7273	broad.mit.edu	37	chr2	179412653	179412653	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgattggtacgtcaatggTaaatgggcttcctgctttgc	11	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179412653	A	A	179412653	3	1	191	1	0	0	0	0	1	0	0	0	16861	1638	57	5	14375	5	TTN	2	179412653	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	13484	179412653	63786720	472	152882											
TTN	7273	broad.mit.edu	37	chr2	179443488	179443488	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttataataagaagcctcctCaaaaccgtgttttgctttac	5	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179443488	G	G	179443488	1	3	191	0	1	0	0	0	0	0	0	0	16861	841	29	4		4	TTN	2	179443488	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	30835	179443488	63755885	473	152883											
TTN	7273	broad.mit.edu	37	chr2	179443726	179443726	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctctaggatatagttGgtgatttcagaacctccatc	7	10	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179443726	T	T	179443726	2	4	191	1	0	0	0	0	0	0	0	1	16861	1335	47	2		2	TTN	2	179443726	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	238	179443726	63755647	474	152884											
TTN	7273	broad.mit.edu	37	chr2	179447386	179447386	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatagagtagaggtctggagAcctgggctgcagtctttcta	13	7	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179447386	G	G	179447386	1	3	191	0	1	0	0	0	0	0	0	0	16861	290	10	5		5	TTN	2	179447386	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	3660	179447386	63751987	475	152885											
TTN	7273	broad.mit.edu	37	chr2	179578693	179578693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcaaaactgtatacccCactgtcactcggtgctacat	5	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179578693	A	A	179578693	3	1	191	1	0	0	0	0	1	0	0	0	16861	594	21	2	77921	2	TTN	2	179578693	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	131307	179578693	63620680	476	152886											
TTN	7273	broad.mit.edu	37	chr2	179605401	179605401	+	Frame_Shift_Del	DEL	T	-	-													ttgttctatggacatggcacTtgggaagattttctcggtat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179605401	-	-	179605401	7	5	191	1	0	1	0	1	0	0	0	0	16861	1609	56	0	92230	0	TTN	2	179605401	Frame_Shift_Del	DEL	T	TCGA-64-5781-01A-01D-1625-08	26708	179605401	63593972	477	152887											
TTN	7273	broad.mit.edu	37	chr2	179610640	179610640	+	Frame_Shift_Del	DEL	A	-	-													tgtctgtgtagttgctctttAagaccaattcttccattaaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179610640	-	-	179610640	7	5	191	1	0	1	0	1	0	0	0	0	16861	372	13	0	93810	0	TTN	2	179610640	Frame_Shift_Del	DEL	A	TCGA-64-5781-01A-01D-1625-08	5239	179610640	63588733	478	152888											
TTN	7273	broad.mit.edu	37	chr2	179622489	179622489	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgggaatgccagaaaccctCgcatgaaatctgactgtctc	9	11	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179622489	A	A	179622489	2	1	191	1	0	0	0	0	0	0	0	1	16861	871	31	3		3	TTN	2	179622489	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	11849	179622489	63576884	479	152889											
SSFA2	6744	broad.mit.edu	37	chr2	182785398	182785398	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaatggaaccagtaagcttCtttcctcttaaatcactggg	8	9	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182785398	G	G	182785398	1	3	191	0	1	0	0	0	0	0	0	0	15301	928	32	4		4	SSFA2	2	182785398	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3162909	182785398	60413975	480	152890											
PDE1A	5136	broad.mit.edu	37	chr2	183129074	183129074	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcacagatgccgcatattCaatattcttctttaagtcga	6	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183129074	A	A	183129074	4	1	191	1	0	0	0	0	0	1	0	0	11727	835	29	3	1568	3	PDE1A	2	183129074	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	343676	183129074	60070299	481	152891											
DNAJC10	54431	broad.mit.edu	37	chr2	183582905	183582905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatatggccattttagtggGcacagatcaggatttttaca	10	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183582905	T	T	183582905	3	4	191	1	0	0	0	0	1	0	0	0	4669	1203	42	3	94	3	DNAJC10	2	183582905	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	453831	183582905	59616468	482	152892											
DNAJC10	54431	broad.mit.edu	37	chr2	183622484	183622484	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcattctttttgtgcccaGgaaaacgttcaaagataccc	6	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183622484	A	A	183622484	2	1	191	1	0	0	0	0	0	0	0	1	4669	991	35	4		4	DNAJC10	2	183622484	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	39579	183622484	59576889	483	152893											
ZNF804A	91752	broad.mit.edu	37	chr2	185731271	185731271	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgaaaaaattctggcatTtctggacttgtgtaatagtt	9	4	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185731271	A	A	185731271	1	1	191	0	1	0	0	0	0	0	0	0	18299	1856	64	5		5	ZNF804A	2	185731271	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2108787	185731271	57468102	484	152894											
ZNF804A	91752	broad.mit.edu	37	chr2	185801171	185801171	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagacatacctgttagtGgtaacagttttgagttgtta	10	4	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801171	A	A	185801171	3	1	191	1	0	0	0	0	1	0	0	0	18299	1348	47	4	1062	4	ZNF804A	2	185801171	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	69900	185801171	57398202	485	152895											
FAM171B	165215	broad.mit.edu	37	chr2	187605168	187605168	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgttgacccctctgccttGgaaaaccagaagaatgccaa	9	12	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187605168	T	T	187605168	3	4	191	1	0	0	0	0	1	0	0	0	5536	1357	47	2	458	2	FAM171B	2	187605168	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1803997	187605168	55594205	486	152896											
ZSWIM2	151112	broad.mit.edu	37	chr2	187702302	187702302	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatgagagataaaattgaaGtttaccatttgtatagagca	8	4	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187702302	C	C	187702302	1	2	191	0	1	0	0	0	0	0	0	0	18370	1044	36	4		4	ZSWIM2	2	187702302	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	97134	187702302	55497071	487	152897											
COL3A1	1281	broad.mit.edu	37	chr2	189876477	189876477	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaagaatttggtgtggacGttggccctgtttgcttttta	11	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189876477	T	T	189876477	3	4	191	1	0	0	0	0	1	0	0	0	3720	1145	40	3	4580	3	COL3A1	2	189876477	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2174175	189876477	53322896	488	152898											
MYO1B	4430	broad.mit.edu	37	chr2	192288625	192288625	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcagggaaaccagaaaaAtgggagtgtcccaacatgta	10	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	192288625	C	C	192288625	3	2	191	1	0	0	0	0	1	0	0	0	10163	101	4	5	3468	5	MYO1B	2	192288625	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2412148	192288625	50910748	489	152899											
DNAH7	56171	broad.mit.edu	37	chr2	196834869	196834869	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaagttaaaaccccttgcTgtcaaaaaattttaacattg	4	7	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196834869	G	G	196834869	1	3	191	0	1	0	0	0	0	0	0	0	4646	1595	55	5		5	DNAH7	2	196834869	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	4546244	196834869	46364504	490	152900											
HECW2	57520	broad.mit.edu	37	chr2	197183364	197183364	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttgcggtgggctctcGgcagcagctgcagctccctc	12	15	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197183364	T	T	197183364	2	4	191	1	0	0	0	0	0	0	0	1	7110	1103	39	1		1	HECW2	2	197183364	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	348495	197183364	46016009	491	152901											
HECW2	57520	broad.mit.edu	37	chr2	197185132	197185132	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgtggtcagctgggagccTtctgccaaggttgtagctga	14	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197185132	A	A	197185132	3	1	191	1	0	0	0	0	1	0	0	0	7110	1608	56	5	3890	5	HECW2	2	197185132	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1768	197185132	46014241	492	152902											
PGAP1	80055	broad.mit.edu	37	chr2	197712780	197712780	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctggtgatttaaaaaaagTtacatgcaatttacagtaat	6	5	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197712780	G	G	197712780	1	3	191	0	1	0	0	0	0	0	0	0	11872	1740	60	5		5	PGAP1	2	197712780	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	527648	197712780	45486593	493	152903											
CLK1	1195	broad.mit.edu	37	chr2	201719310	201719310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagatgtgatcaaatgatacTaaggatgtcactaactctta	7	7	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201719310	A	A	201719310	1	1	191	0	1	0	0	0	0	0	0	0	3568	1537	53	5		5	CLK1	2	201719310	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	4006530	201719310	41480063	494	152904											
NIF3L1	60491	broad.mit.edu	37	chr2	201758087	201758087	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggacaaagtcatgtctgcAgtgaaaggaattgacggtgt	13	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201758087	T	T	201758087	2	4	191	1	0	0	0	0	0	0	0	1	10511	175	7	5		5	NIF3L1	2	201758087	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	38777	201758087	41441286	495	152905											
TRAK2	66008	broad.mit.edu	37	chr2	202245493	202245493	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactctggctatccccagtcTcttcagcctgtccactaagt	6	16	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202245493	A	A	202245493	4	1	191	1	0	0	0	0	0	1	0	0	16574	1559	54	5	230	5	TRAK2	2	202245493	Nonsense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	487406	202245493	40953880	496	152906											
MPP4	58538	broad.mit.edu	37	chr2	202558754	202558754	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacacagctcactcagtccCactggccaccagctctcagc	7	19	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202558754	G	G	202558754	1	3	191	0	1	0	0	0	0	0	0	0	9830	609	21	4		4	MPP4	2	202558754	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	313261	202558754	40640619	497	152907											
PARD3B	117583	broad.mit.edu	37	chr2	206364738	206364738	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggaagagcaaggccatctGagtatgacctactctgggta	12	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206364738	T	T	206364738	4	4	191	1	0	0	0	0	0	1	0	0	11538	1291	45	3	3245	3	PARD3B	2	206364738	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3805984	206364738	36834635	498	152908											
LOC200726	200726	broad.mit.edu	37	chr2	207508998	207508998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggagggatccaccgccCcttgagcttcacctgctccc	10	17	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207508998	T	T	207508998	3	4	191	1	0	0	0	0	1	0	0	0	8951	623	22	4	40	4	LOC200726	2	207508998	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1144260	207508998	35690375	499	152909											
DYTN	391475	broad.mit.edu	37	chr2	207572137	207572137	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcttggagtgcctgagaaAgttgctgcacagaaagggag	15	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207572137	T	T	207572137	3	4	191	1	0	0	0	0	1	0	0	0	4901	72	3	5	1591	5	DYTN	2	207572137	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	63139	207572137	35627236	500	152910											
PLEKHM3	389072	broad.mit.edu	37	chr2	208773222	208773223	+	Intron	DNP	CC	GA	GA													agcaacaaaaatgaaacagcCcctctgagcacttacctgct							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	208773223	GA	GA	208773222	1	3	191	0	1	0	0	0	0	0	0	0	12177	638	22	4		4	PLEKHM3	2	208773222	Intron	DNP	CC	TCGA-64-5781-01A-01D-1625-08	1201085	208773222	34426151	501	152911											
CRYGD	1421	broad.mit.edu	37	chr2	208986726	208986726	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgaaatgattccaatgcAttgttaggcagtccagcttg	11	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208986726	T	T	208986726	1	4	191	0	1	0	0	0	0	0	0	0	3949	232	8	5		5	CRYGD	2	208986726	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	213504	208986726	34212647	502	152912											
CPS1	1373	broad.mit.edu	37	chr2	211452604	211452604	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcataaaaaagatacagtCtgtggcacttgttgtgcctt	8	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211452604	T	T	211452604	1	4	191	0	1	0	0	0	0	0	0	0	3855	928	32	4		4	CPS1	2	211452604	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2465878	211452604	31746769	503	152913											
CPS1	1373	broad.mit.edu	37	chr2	211464127	211464127	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaactgttctgatgaaccCaaacattgcatcagtccaga	6	11	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211464127	G	G	211464127	3	3	191	1	0	0	0	0	1	0	0	0	3855	594	21	4	1467	4	CPS1	2	211464127	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	11523	211464127	31735246	504	152914											
CPS1	1373	broad.mit.edu	37	chr2	211513207	211513207	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattaattagaatgaagcacTggaatttgcaaagtctgtgg	10	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211513207	C	C	211513207	3	2	191	1	0	0	0	0	1	0	0	0	3855	1580	55	5	3475	5	CPS1	2	211513207	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	49080	211513207	31686166	505	152915											
ERBB4	2066	broad.mit.edu	37	chr2	212251644	212251644	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctctcctcgtgggctccGttctggggcaaacacggtgg	14	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212251644	T	T	212251644	2	4	191	1	0	0	0	0	0	0	0	1	5251	1144	40	3		3	ERBB4	2	212251644	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	738437	212251644	30947729	506	152916											
SPAG16	79582	broad.mit.edu	37	chr2	214204937	214204937	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagaacgtgattttcatcGaatgcatcataagcgaatag	9	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214204937	T	T	214204937	3	4	191	1	0	0	0	0	1	0	0	0	15094	1058	37	3	625	3	SPAG16	2	214204937	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1953293	214204937	28994436	507	152917											
SPAG16	79582	broad.mit.edu	37	chr2	215274850	215274850	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattctctctctctctcctcTctgtctccctcaggtcgagt	5	17	6	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215274850	C	C	215274850	1	2	191	0	1	0	0	0	0	0	0	0	15094	1566	54	5		5	SPAG16	2	215274850	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1069913	215274850	27924523	508	152918											
ABCA12	26154	broad.mit.edu	37	chr2	215914396	215914396	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaagactctaaaaggGtcatgttagaaaggcaaaat	12	4	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215914396	C	C	215914396	3	2	191	1	0	0	0	0	1	0	0	0	30	1261	44	4	7363	4	ABCA12	2	215914396	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	639546	215914396	27284977	509	152919											
FN1	2335	broad.mit.edu	37	chr2	216272915	216272915	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtcgtgtcaggaggggcatCaggcgctaagaaagaaagaa	15	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216272915	T	T	216272915	3	4	191	1	0	0	0	0	1	0	0	0	6020	826	29	4	5119	4	FN1	2	216272915	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	358519	216272915	26926458	510	152920											
XRCC5	7520	broad.mit.edu	37	chr2	217069067	217069067	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctggcccccaaagacaaacCaagtggagacacagcagctg	10	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217069067	G	G	217069067	3	3	191	1	0	0	0	0	1	0	0	0	17583	594	21	4	2210	4	XRCC5	2	217069067	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	796152	217069067	26130306	511	152921											
CXCR2	3579	broad.mit.edu	37	chr2	219000380	219000380	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaggtgatccaggagaccTgtgagcgccgcaatcacatc	11	14	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	219000380	C	C	219000380	3	2	191	1	0	0	0	0	1	0	0	0	4124	1580	55	5	858	5	CXCR2	2	219000380	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1931313	219000380	24198993	512	152922											
VIL1	7429	broad.mit.edu	37	chr2	219294218	219294218	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaactgtaccagtgagcgCccagcggggtcttcctgggt	13	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219294218	A	A	219294218	1	1	191	0	1	0	0	0	0	0	0	0	17291	754	26	3		3	VIL1	2	219294218	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	293838	219294218	23905155	513	152923											
STK36	27148	broad.mit.edu	37	chr2	219556840	219556840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcttctgatgccctgatGctacctctgcacttctctcc	6	16	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219556840	T	T	219556840	1	4	191	0	1	0	0	0	0	0	0	0	15420	1334	46	3		3	STK36	2	219556840	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	262622	219556840	23642533	514	152924											
CCDC108	255101	broad.mit.edu	37	chr2	219874831	219874831	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggtggagagcggaggtaaAgaaataagaaccggccaggc	17	6	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219874831	T	T	219874831	1	4	191	0	1	0	0	0	0	0	0	0	2769	87	3	5		5	CCDC108	2	219874831	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	317991	219874831	23324542	515	152925											
FAM134A	79137	broad.mit.edu	37	chr2	220045025	220045025	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggaatagaggtggcgGgggatgggagtggagtgata	23	1	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220045025	A	A	220045025	1	1	191	0	1	0	0	0	0	0	0	0	5491	1247	43	4		4	FAM134A	2	220045025	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	170194	220045025	23154348	516	152926											
DNAJB2	3300	broad.mit.edu	37	chr2	220147654	220147654	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttccctgggcactccggtAagttctgccccttcccacgt	8	18	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220147654	T	T	220147654	1	4	191	0	1	0	0	0	0	0	0	0	4660	377	13	5		5	DNAJB2	2	220147654	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	102629	220147654	23051719	517	152927											
SPEG	10290	broad.mit.edu	37	chr2	220332170	220332170	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccaaaggtaactccccactCaggcattgggctgccgtggg	13	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220332170	G	G	220332170	1	3	191	0	1	0	0	0	0	0	0	0	15154	841	29	4		4	SPEG	2	220332170	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	184516	220332170	22867203	518	152928											
SPEG	10290	broad.mit.edu	37	chr2	220332280	220332280	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggaagcgggggagggtGggagctagtacattgccttg	21	5	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220332280	T	T	220332280	1	4	191	0	1	0	0	0	0	0	0	0	15154	1363	47	2		2	SPEG	2	220332280	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	110	220332280	22867093	519	152929											
SPEG	10290	broad.mit.edu	37	chr2	220341530	220341530	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggatcttgggaggggctgagGaggcagggtaaagccagccc	19	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220341530	T	T	220341530	1	4	191	0	1	0	0	0	0	0	0	0	15154	1189	41	3		3	SPEG	2	220341530	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	9250	220341530	22857843	520	152930											
SPEG	10290	broad.mit.edu	37	chr2	220341568	220341568	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctagccccttctcttccCacccctatccccatgtgttt	3	21	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220341568	G	G	220341568	1	3	191	0	1	0	0	0	0	0	0	0	15154	609	21	4		4	SPEG	2	220341568	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	38	220341568	22857805	521	152931											
SPEG	10290	broad.mit.edu	37	chr2	220344787	220344788	+	Frame_Shift_Ins	INS	-	C	C													ccaggagagccccagtactgINSccagtatggcacacctgagt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220344788	C	C	220344787	7	5	191	1	0	1	1	0	0	0	0	0	15154	1319	46	0	5377	0	SPEG	2	220344787	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	3219	220344787	22854586	522	152932											
SPEG	10290	broad.mit.edu	37	chr2	220354469	220354469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttcctttgtgtctgcacCaccagcccctgagcccccag	8	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220354469	A	A	220354469	3	1	191	1	0	0	0	0	1	0	0	0	15154	594	21	2	8883	2	SPEG	2	220354469	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	9682	220354469	22844904	523	152933											
SPEG	10290	broad.mit.edu	37	chr2	220354645	220354645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagaaaccctacaccttcCtggaggagaaagccaggcaa	9	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220354645	A	A	220354645	3	1	191	1	0	0	0	0	1	0	0	0	15154	680	24	2	9059	2	SPEG	2	220354645	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	176	220354645	22844728	524	152934											
SLC4A3	6508	broad.mit.edu	37	chr2	220493218	220493218	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggctgtgagcaggtttgGggacctcatcagcaagcccc	13	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220493218	C	C	220493218	3	2	191	1	0	0	0	0	1	0	0	0	14769	1232	43	4	149	4	SLC4A3	2	220493218	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	138573	220493218	22706155	525	152935											
SGPP2	130367	broad.mit.edu	37	chr2	223317210	223317210	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctagttgtctgctttattAcgttatggctttccccagca	7	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223317210	G	G	223317210	1	3	191	0	1	0	0	0	0	0	0	0	14333	406	14	5		5	SGPP2	2	223317210	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	2823992	223317210	19882163	526	152936											
SPHKAP	80309	broad.mit.edu	37	chr2	228882377	228882377	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actcagtaaccgattccgggGatagccctgcgcctgccaca	10	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228882377	T	T	228882377	3	4	191	1	0	0	0	0	1	0	0	0	15166	1174	41	3	1933	3	SPHKAP	2	228882377	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5565167	228882377	14316996	527	152937											
SPHKAP	80309	broad.mit.edu	37	chr2	229046406	229046406	+	5'Flank	DEL	C	-	-													ctcccagagtgccagactggCgcgcgccaggagagaggcgc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	229046406	-	-	229046406	6	5	191	0	1	1	0	1	0	0	0	0	15166	783	27	0		0	SPHKAP	2	229046406	5'Flank	DEL	C	TCGA-64-5781-01A-01D-1625-08	164029	229046406	14152967	528	152938											
SP100	6672	broad.mit.edu	37	chr2	231313918	231313918	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctattcttgcccctttctgGaatgtgctgtggggttgcct	12	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231313918	A	A	231313918	1	1	191	0	1	0	0	0	0	0	0	0	15074	1189	41	4		4	SP100	2	231313918	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2267512	231313918	11885455	529	152939											
PSMD1	5707	broad.mit.edu	37	chr2	231926996	231926996	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaattgaatgcagttgttaAtgacttctgggcagaaattt	9	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231926996	G	G	231926996	3	3	191	1	0	0	0	0	1	0	0	0	12798	101	4	5	105	5	PSMD1	2	231926996	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	613078	231926996	11272377	530	152940											
TRPM8	79054	broad.mit.edu	37	chr2	234872068	234872068	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaccaaatatatgctttgTtataacagttctgatcctct	4	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234872068	A	A	234872068	1	1	191	0	1	0	0	0	0	0	0	0	16717	1740	60	5		5	TRPM8	2	234872068	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2945072	234872068	8327305	531	152941											
AGAP1	116987	broad.mit.edu	37	chr2	236706323	236706323	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaataacagatttcgacAacagactgatgatctctgct	8	8	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236706323	T	T	236706323	1	4	191	0	1	0	0	0	0	0	0	0	366	145	5	5		5	AGAP1	2	236706323	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1834255	236706323	6493050	532	152942											
ASB18	401036	broad.mit.edu	37	chr2	237150088	237150088	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgcaccggggaccctgCtctagcttgaggatccttct	10	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237150088	G	G	237150088	1	3	191	0	1	0	0	0	0	0	0	0	1026	812	28	4		4	ASB18	2	237150088	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	443765	237150088	6049285	533	152943											
COL6A3	1293	broad.mit.edu	37	chr2	238244728	238244728	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggaacacaccctggagCaggaaatgaggatgtcacaa	12	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238244728	A	A	238244728	1	1	191	0	1	0	0	0	0	0	0	0	3733	725	25	3		3	COL6A3	2	238244728	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1094640	238244728	4954645	534	152944											
PRR21	643905	broad.mit.edu	37	chr2	240981267	240981267	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtacatgttagaaacaAgaagacaggtgttgaaggtg	13	3	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240981267	T	T	240981267	3	4	191	1	0	0	0	0	1	0	0	0	12698	72	3	5	39	5	PRR21	2	240981267	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2736539	240981267	2218106	535	152945											
OTOS	150677	broad.mit.edu	37	chr2	241078728	241078728	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttccagaagtcagaggtGgagaaaggccagtagggcat	15	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241078728	T	T	241078728	2	4	191	1	0	0	0	0	0	0	0	1	11403	1335	47	2		2	OTOS	2	241078728	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	97461	241078728	2120645	536	152946											
RNPEPL1	57140	broad.mit.edu	37	chr2	241513651	241513651	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggtcatcgatgtcatccacGaggtggcccacagttggttc	12	11	2	0	rs139059683		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241513651	C	C	241513651	3	2	191	1	0	0	0	0	1	0	0	0	13621	1059	37	4	377	4	RNPEPL1	2	241513651	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	434923	241513651	1685722	537	152947											
PASK	23178	broad.mit.edu	37	chr2	242077446	242077446	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcccagccacgtcctcCccagacacgtacccgtgaag	9	18	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242077446	A	A	242077446	2	1	191	1	0	0	0	0	0	0	0	1	11566	610	22	2		2	PASK	2	242077446	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	563795	242077446	1121927	538	152948											
PASK	23178	broad.mit.edu	37	chr2	242079351	242079351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggcctccatgtgctcctcGctgagggcctccaccacatc	9	18	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242079351	T	T	242079351	3	4	191	1	0	0	0	0	1	0	0	0	11566	1078	38	3	3482	3	PASK	2	242079351	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1905	242079351	1120022	539	152949											
HDLBP	3069	broad.mit.edu	37	chr2	242174779	242174779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggccacccgccgtgaagGgaagtcagtgcccagtccga	14	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242174779	A	A	242174779	1	1	191	0	1	0	0	0	0	0	0	0	7092	1247	43	4		4	HDLBP	2	242174779	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	95428	242174779	1024594	540	152950											
D2HGDH	728294	broad.mit.edu	37	chr2	242689675	242689675	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgtgtgcatgcagctggtCgggcgccatctccacctggc	14	14	1	0	rs141524359		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242689675	G	G	242689675	2	3	191	1	0	0	0	0	0	0	0	1	4246	871	31	4		4	D2HGDH	2	242689675	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	514896	242689675	509698	541	152951											
NEU4	129807	broad.mit.edu	37	chr2	242758367	242758367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgggggtgctgctggcCctcctgacaggccttctggc	15	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242758367	A	A	242758367	3	1	191	1	0	0	0	0	1	0	0	0	10439	623	22	2	1501	2	NEU4	2	242758367	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	68692	242758367	441006	542	152952											
CNTN4	152330	broad.mit.edu	37	chr3	2967317	2967317	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtactgtctttcagctgtAggtccagatttttcaagaac	8	8	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2967317	T	T	2967317	2	4	191	1	0	0	0	0	0	0	0	1	3675	407	15	5		5	CNTN4	3	2967317	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08		2967317	195055113	543	152953											
IL5RA	3568	broad.mit.edu	37	chr3	3118193	3118193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaccccactgcaagcaCgcaaatgtaaagaacactta	6	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3118193	A	A	3118193	1	1	191	0	1	0	0	0	0	0	0	0	7770	551	19	3		3	IL5RA	3	3118193	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	150876	3118193	194904237	544	152954											
IL5RA	3568	broad.mit.edu	37	chr3	3132013	3132013	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgaatgttaaacctgGgctttctatgtaaggctcca	10	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3132013	T	T	3132013	1	4	191	0	1	0	0	0	0	0	0	0	7770	1247	43	2		2	IL5RA	3	3132013	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	13820	3132013	194890417	545	152955											
LRRN1	57633	broad.mit.edu	37	chr3	3887744	3887744	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataactgtggaaaccctttcAgataaatacaagctaagtag	7	7	1	1	rs150270030	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3887744	T	T	3887744	2	4	191	1	0	0	0	0	0	0	0	1	9121	175	7	5		5	LRRN1	3	3887744	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	755731	3887744	194134686	546	152956											
ITPR1	3708	broad.mit.edu	37	chr3	4711404	4711404	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attccagtgacccaggaactGatatgtaaagctgtgctgaa	10	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4711404	T	T	4711404	2	4	191	1	0	0	0	0	0	0	0	1	7990	1277	45	3		3	ITPR1	3	4711404	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	823660	4711404	193311026	547	152957											
ITPR1	3708	broad.mit.edu	37	chr3	4816886	4816886	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ataacgtttccctcttccctCtgcctttgctcaccgaacct	4	17	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4816886	T	T	4816886	1	4	191	0	1	0	0	0	0	0	0	0	7990	928	32	4		4	ITPR1	3	4816886	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	105482	4816886	193205544	548	152958											
OXTR	5021	broad.mit.edu	37	chr3	8809287	8809287	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgtgatgtaggccttgggtCcccagggctggatgaagacg	16	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8809287	A	A	8809287	3	1	191	1	0	0	0	0	1	0	0	0	11432	855	30	3	590	3	OXTR	3	8809287	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3992401	8809287	189213143	549	152959											
RAD18	56852	broad.mit.edu	37	chr3	8940734	8940734	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatattatcttcctgtcctAggaaaaaataaatttaagag	5	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8940734	G	G	8940734	1	3	191	0	1	0	0	0	0	0	0	0	13088	435	15	5		5	RAD18	3	8940734	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	131447	8940734	189081696	550	152960											
MTMR14	64419	broad.mit.edu	37	chr3	9719630	9719630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctaagcctcctctggtGgccaacccacatctcacagg	7	17	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9719630	T	T	9719630	1	4	191	0	1	0	0	0	0	0	0	0	10036	1363	47	2		2	MTMR14	3	9719630	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	778896	9719630	188302800	551	152961											
CIDEC	63924	broad.mit.edu	37	chr3	9911858	9911858	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacctcacctgttctgatGggggctgccatttctgcccc	12	14	3	1	rs145091411		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9911858	T	T	9911858	3	4	191	1	0	0	0	0	1	0	0	0	3458	1348	47	2	372	2	CIDEC	3	9911858	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	192228	9911858	188110572	552	152962											
CIDEC	63924	broad.mit.edu	37	chr3	10042374	10042374	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcaagcctgccctttctgCcttcttcttaatgccggcaa	6	14	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10042374	T	T	10042374	1	4	191	0	1	0	0	0	0	0	0	0	3458	754	26	4		4	CIDEC	3	10042374	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	130516	10042374	187980056	553	152963											
ATP2B2	491	broad.mit.edu	37	chr3	10442757	10442757	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccgtcggcagggaggaGgtcacctggcaagaggaagg	20	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10442757	T	T	10442757	3	4	191	1	0	0	0	0	1	0	0	0	1144	1000	35	2	3146	2	ATP2B2	3	10442757	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	400383	10442757	187579673	554	152964											
WNT7A	7476	broad.mit.edu	37	chr3	13916501	13916501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcagagcagttccagcGgccattgcggaactgaaact	12	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13916501	T	T	13916501	3	4	191	1	0	0	0	0	1	0	0	0	17521	1116	39	1	820	1	WNT7A	3	13916501	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3473744	13916501	184105929	555	152965											
GRIP2	80852	broad.mit.edu	37	chr3	14552836	14552836	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgcatgagtcgggggcAgaggggatggaaggagcctg	20	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14552836	T	T	14552836	1	4	191	0	1	0	0	0	0	0	0	0	6854	203	7	5		5	GRIP2	3	14552836	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	636335	14552836	183469594	556	152966											
FGD5	152273	broad.mit.edu	37	chr3	14905750	14905750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacagtgcttcaagagacCccagtgtcacccacaaggta	10	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14905750	A	A	14905750	3	1	191	1	0	0	0	0	1	0	0	0	5893	623	22	2	2647	2	FGD5	3	14905750	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	352914	14905750	183116680	557	152967											
COLQ	8292	broad.mit.edu	37	chr3	15499752	15499752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgtaggaagggttattcaCattcatagtgggtccacaaa	10	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15499752	A	A	15499752	3	1	191	1	0	0	0	0	1	0	0	0	3745	478	17	3	492	3	COLQ	3	15499752	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	594002	15499752	182522678	558	152968											
SATB1	6304	broad.mit.edu	37	chr3	18427954	18427954	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccatggccgaggcagcattCaagctcctttccctttcgtc	8	16	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18427954	A	A	18427954	3	1	191	1	0	0	0	0	1	0	0	0	13965	825	29	3	951	3	SATB1	3	18427954	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2928202	18427954	179594476	559	152969											
KCNH8	131096	broad.mit.edu	37	chr3	19479502	19479502	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattttcacttttaaagaatGaaatctaatagcttgccttt	4	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19479502	A	A	19479502	1	1	191	0	1	0	0	0	0	0	0	0	8108	1305	45	4		4	KCNH8	3	19479502	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1051548	19479502	178542928	560	152970											
RAB5A	5868	broad.mit.edu	37	chr3	20017161	20017161	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaatatgggatacagctGgtcaagaacgataccatagc	10	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20017161	C	C	20017161	3	2	191	1	0	0	0	0	1	0	0	0	13056	1348	47	4	238	4	RAB5A	3	20017161	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	537659	20017161	178005269	561	152971											
EOMES	8320	broad.mit.edu	37	chr3	27761887	27761887	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacaggcccaggccccagcGggttccccagacacctggga	13	16	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27761887	C	C	27761887	1	2	191	0	1	0	0	0	0	0	0	0	5189	1131	39	4		4	EOMES	3	27761887	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	7744726	27761887	170260543	562	152972											
CMTM7	112616	broad.mit.edu	37	chr3	32491135	32491135	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagaagggcttggtttctGgggcattcccttcatagaat	12	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32491135	A	A	32491135	1	1	191	0	1	0	0	0	0	0	0	0	3620	1363	47	4		4	CMTM7	3	32491135	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4729248	32491135	165531295	563	152973											
CCR4	1233	broad.mit.edu	37	chr3	32995815	32995815	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgttcactgctgccttaatCccatcatctacttttttctg	4	12	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32995815	A	A	32995815	3	1	191	1	0	0	0	0	1	0	0	0	2973	855	30	3	903	3	CCR4	3	32995815	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	504680	32995815	165026615	564	152974											
CLASP2	23122	broad.mit.edu	37	chr3	33557609	33557609	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgatgccttaggatttctCttaaaacctttaatgccaaa	6	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33557609	T	T	33557609	3	4	191	1	0	0	0	0	1	0	0	0	3486	913	32	4	520	4	CLASP2	3	33557609	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	561794	33557609	164464821	565	152975											
CLASP2	23122	broad.mit.edu	37	chr3	33558651	33558651	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctgcaactaggtcagaaTgatctagggaaagatctgtc	10	8	4	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33558651	A	A	33558651	3	1	191	1	0	0	0	0	1	0	0	0	3486	1464	51	5	737	5	CLASP2	3	33558651	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1042	33558651	164463779	566	152976											
ITGA9	3680	broad.mit.edu	37	chr3	37831762	37831762	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagaaatggcagcagcttgtCatctttatgagcaatctctc	8	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37831762	A	A	37831762	1	1	191	0	1	0	0	0	0	0	0	0	7953	841	29	3		3	ITGA9	3	37831762	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4273111	37831762	160190668	567	152977											
OXSR1	9943	broad.mit.edu	37	chr3	38287626	38287626	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccagaacagatctctgctCatctacctcagccagctggg	8	14	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38287626	T	T	38287626	3	4	191	1	0	0	0	0	1	0	0	0	11430	826	29	4	1221	4	OXSR1	3	38287626	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	455864	38287626	159734804	568	152978											
SLC22A13	9390	broad.mit.edu	37	chr3	38316314	38316314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcctgggagggccacaGccccaaacggcctgtggagg	18	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38316314	T	T	38316314	1	4	191	0	1	0	0	0	0	0	0	0	14557	986	34	3		3	SLC22A13	3	38316314	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	28688	38316314	159706116	569	152979											
XYLB	9942	broad.mit.edu	37	chr3	38454547	38454547	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcccagatttactgaccCcatttgtcgacatggcccca	7	16	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38454547	T	T	38454547	1	4	191	0	1	0	0	0	0	0	0	0	17589	638	22	4		4	XYLB	3	38454547	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	138233	38454547	159567883	570	152980											
C3orf39	84892	broad.mit.edu	37	chr3	43121603	43121603	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtagattcggaagagccactCggggttccggcaacagagat	14	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43121603	A	A	43121603	4	1	191	1	0	0	0	0	0	1	0	0	2251	893	31	3	425	3	C3orf39	3	43121603	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4667056	43121603	154900827	571	152981											
ZNF502	91392	broad.mit.edu	37	chr3	44751719	44751719	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctaaatctgagccagcaggAaaagggcatttctcaagcat	10	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44751719	G	G	44751719	1	3	191	0	1	0	0	0	0	0	0	0	18077	261	9	5		5	ZNF502	3	44751719	5'Flank	SNP	A	TCGA-64-5781-01A-01D-1625-08	1630116	44751719	153270711	572	152982											
ZNF502	91392	broad.mit.edu	37	chr3	44751907	44751907	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtcgtgtacagaacttaCaccatagcgcctctctctcc	6	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44751907	T	T	44751907	1	4	191	0	1	0	0	0	0	0	0	0	18077	493	17	4		4	ZNF502	3	44751907	5'Flank	SNP	C	TCGA-64-5781-01A-01D-1625-08	188	44751907	153270523	573	152983											
MAP4	4134	broad.mit.edu	37	chr3	47963399	47963399	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaagaaatccaaaactcattCctggtgaatgcaactagaaa	7	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47963399	G	G	47963399	1	3	191	0	1	0	0	0	0	0	0	0	9350	870	30	4		4	MAP4	3	47963399	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3211492	47963399	150059031	574	152984											
ATRIP	84126	broad.mit.edu	37	chr3	48501642	48501642	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccggaatgagtgctcacgtGatggagacccagcagaggga	15	10	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48501642	A	A	48501642	3	1	191	1	0	0	0	0	1	0	0	0	1209	1290	45	4	1219	4	ATRIP	3	48501642	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	538243	48501642	149520788	575	152985											
UBA7	7318	broad.mit.edu	37	chr3	49845456	49845456	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggggtggggttacctgGgcacggttgaccggtggaat	18	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49845456	A	A	49845456	2	1	191	1	0	0	0	0	0	0	0	1	16959	1219	43	4		4	UBA7	3	49845456	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1343814	49845456	148176974	576	152986											
SEMA3B	7869	broad.mit.edu	37	chr3	50308357	50308357	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgaagttgctgcatgccTacaaccgcacccatttgctg	9	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50308357	C	C	50308357	3	2	191	1	0	0	0	0	1	0	0	0	14138	1522	53	5	380	5	SEMA3B	3	50308357	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	462901	50308357	147714073	577	152987											
IFRD2	7866	broad.mit.edu	37	chr3	50327638	50327638	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccagggcatcggctagcgtGaggcggcgctccagcaagaa	15	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50327638	A	A	50327638	2	1	191	1	0	0	0	0	0	0	0	1	7624	1277	45	4		4	IFRD2	3	50327638	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	19281	50327638	147694792	578	152988											
DOCK3	1795	broad.mit.edu	37	chr3	50824126	50824126	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgccacagatttcacagAtaaagggtttctctccagtg	8	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50824126	G	G	50824126	1	3	191	0	1	0	0	0	0	0	0	0	4728	348	12	5		5	DOCK3	3	50824126	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	496488	50824126	147198304	579	152989											
GRM2	2912	broad.mit.edu	37	chr3	51743227	51743227	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccgcatcaaccgtgacccGcacctgctgcctggcgtgcg	12	17	1	1	rs140328919		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51743227	A	A	51743227	2	1	191	1	0	0	0	0	0	0	0	1	6863	1074	38	4		4	GRM2	3	51743227	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	919101	51743227	146279203	580	152990											
CACNA2D3	55799	broad.mit.edu	37	chr3	54871258	54871258	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtaagcagaacgaaaccGtgagtacagtcgctgagctt	11	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54871258	T	T	54871258	5	4	191	1	0	0	0	0	0	0	1	0	2576	1159	40	3	1529	3	CACNA2D3	3	54871258	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	3128031	54871258	143151172	581	152991											
DNAH12	201625	broad.mit.edu	37	chr3	57487119	57487120	+	Missense_Mutation	DNP	GG	AA	AA													ctcaactgcagtcccatcaaGgagccaattatatttttcaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	57487120	AA	AA	57487119	3	1	191	1	0	0	0	0	1	0	0	0	4640	1000	35	4	8253	4	DNAH12	3	57487119	Missense_Mutation	DNP	GG	TCGA-64-5781-01A-01D-1625-08	2615861	57487119	140535311	582	152992											
DNASE1L3	1776	broad.mit.edu	37	chr3	58178443	58178443	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgctctttgttttcttccTtagagtgacagattttttgc	7	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58178443	A	A	58178443	3	1	191	1	0	0	0	0	1	0	0	0	4703	1608	56	5	32	5	DNASE1L3	3	58178443	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	691324	58178443	139843987	583	152993											
EPHA3	2042	broad.mit.edu	37	chr3	89521734	89521734	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttcacgggtgtggagtaCagttcttgtgacacaatagc	11	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89521734	G	G	89521734	4	3	191	1	0	0	0	0	0	1	0	0	5210	489	17	4	2899	4	EPHA3	3	89521734	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	31343291	89521734	108500696	584	152994											
KIAA1524	57650	broad.mit.edu	37	chr3	108279370	108279370	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccaaattttccagaataTtgttatttcttatattaagg	4	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108279370	A	A	108279370	1	1	191	0	1	0	0	0	0	0	0	0	8309	1508	52	5		5	KIAA1524	3	108279370	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	18757636	108279370	89743060	585	152995											
CD96	10225	broad.mit.edu	37	chr3	111368458	111368458	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatcaatctgtgttctcCtttaaagaaacaacacatgt	4	10	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111368458	A	A	111368458	1	1	191	0	1	0	0	0	0	0	0	0	3078	696	24	2		2	CD96	3	111368458	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3089088	111368458	86653972	586	152996											
ABHD10	55347	broad.mit.edu	37	chr3	111697944	111697944	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggcagctgtggcggcctgGgtaccttgtcggagctgggg	19	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111697944	C	C	111697944	3	2	191	1	0	0	0	0	1	0	0	0	74	1241	43	4	38	4	ABHD10	3	111697944	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	329486	111697944	86324486	587	152997											
SLC9A10	285335	broad.mit.edu	37	chr3	111988940	111988940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctacaagaaaggggcGtaaataagaaatagttaata	9	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111988940	T	T	111988940	1	4	191	0	1	0	0	0	0	0	0	0	14824	1160	40	3		3	SLC9A10	3	111988940	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	290996	111988940	86033490	588	152998											
KTELC1	56983	broad.mit.edu	37	chr3	119211072	119211072	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagcactcaaatgcagaCtgctattatcattaaattct	7	8	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119211072	T	T	119211072	1	4	191	0	1	0	0	0	0	0	0	0	8655	580	20	4		4	KTELC1	3	119211072	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	7222132	119211072	78811358	589	152999											
ADPRH	141	broad.mit.edu	37	chr3	119304957	119304957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcttgccaagggttataCataaagaaaggcacattgtt	8	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119304957	A	A	119304957	1	1	191	0	1	0	0	0	0	0	0	0	331	493	17	3		3	ADPRH	3	119304957	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	93885	119304957	78717473	590	153000											
CASR	846	broad.mit.edu	37	chr3	122003851	122003851	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgagccattactcccgctgcAgtgcggggaaacggacttag	13	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122003851	T	T	122003851	3	4	191	1	0	0	0	0	1	0	0	0	2708	188	7	5	3102	5	CASR	3	122003851	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2698894	122003851	76018579	591	153001											
ALDH1L1	10840	broad.mit.edu	37	chr3	125828744	125828744	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagaggccatgggacctgCtgcctcaattgacccaagcg	11	14	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125828744	A	A	125828744	1	1	191	0	1	0	0	0	0	0	0	0	494	812	28	3		3	ALDH1L1	3	125828744	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3824893	125828744	72193686	592	153002											
UROC1	131669	broad.mit.edu	37	chr3	126201071	126201071	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggcaccataagggccacGtgaggatgtgcgagaagtgc	16	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126201071	T	T	126201071	1	4	191	0	1	0	0	0	0	0	0	0	17154	1160	40	3		3	UROC1	3	126201071	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	372327	126201071	71821359	593	153003											
PLXNA1	5361	broad.mit.edu	37	chr3	126749031	126749031	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcctagtcacccaggagGtgtaggcagccaggcagcgc	14	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126749031	C	C	126749031	1	2	191	0	1	0	0	0	0	0	0	0	12214	1276	44	4		4	PLXNA1	3	126749031	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	547960	126749031	71273399	594	153004											
DNAJB8	165721	broad.mit.edu	37	chr3	128181690	128181690	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccaaagcctgccgagaaGgcccccctcaggccatggcc	10	18	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128181690	A	A	128181690	2	1	191	1	0	0	0	0	0	0	0	1	4666	987	35	4		4	DNAJB8	3	128181690	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1432659	128181690	69840740	595	153005											
MBD4	8930	broad.mit.edu	37	chr3	129151986	129151986	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgaagatcgtagagaccaaGaggtttaagaagttctgaca	11	7	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129151986	C	C	129151986	3	2	191	1	0	0	0	0	1	0	0	0	9439	942	33	4	238	4	MBD4	3	129151986	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	970296	129151986	68870444	596	153006											
MBD4	8930	broad.mit.edu	37	chr3	129152874	129152874	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaacccaaaatggaattaGaatttgctgttctgattggg	10	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129152874	A	A	129152874	1	1	191	0	1	0	0	0	0	0	0	0	9439	957	33	4		4	MBD4	3	129152874	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	888	129152874	68869556	597	153007											
IFT122	55764	broad.mit.edu	37	chr3	129233203	129233203	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgggcctggtgttgccCctgctgtccttaaccctgtt	10	15	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129233203	G	G	129233203	1	3	191	0	1	0	0	0	0	0	0	0	7625	638	22	4		4	IFT122	3	129233203	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	80329	129233203	68789227	598	153008											
COL6A6	131873	broad.mit.edu	37	chr3	130305379	130305379	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccctcataactgttgctctgGatggacctgctgattcaagt	9	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130305379	C	C	130305379	3	2	191	1	0	0	0	0	1	0	0	0	3735	1174	41	4	4038	4	COL6A6	3	130305379	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1072176	130305379	67717051	599	153009											
PIK3R4	30849	broad.mit.edu	37	chr3	130463714	130463714	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgttattcaagaatggacGggtactgatgcgatcataga	11	5	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130463714	A	A	130463714	3	1	191	1	0	0	0	0	1	0	0	0	12016	1116	39	4	3803	4	PIK3R4	3	130463714	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	158335	130463714	67558716	600	153010											
CPNE4	131034	broad.mit.edu	37	chr3	131624169	131624169	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggggtctggtttggaaaggGcatctctgtcagaaatgcct	14	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131624169	C	C	131624169	3	2	191	1	0	0	0	0	1	0	0	0	3846	1203	42	4	1614	4	CPNE4	3	131624169	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1160455	131624169	66398261	601	153011											
TF	7018	broad.mit.edu	37	chr3	133475876	133475876	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atccccacctgccatcctccCctccagcttagtgctccctg	5	21	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133475876	G	G	133475876	1	3	191	0	1	0	0	0	0	0	0	0	15908	638	22	4		4	TF	3	133475876	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1851707	133475876	64546554	602	153012											
TF	7018	broad.mit.edu	37	chr3	133494434	133494434	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaaagataaggaagcttgCgtccacaagatattacgtca	10	8	1	2	rs142894328		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133494434	T	T	133494434	2	4	191	1	0	0	0	0	0	0	0	1	15908	776	27	4		4	TF	3	133494434	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	18558	133494434	64527996	603	153013											
EPHB1	2047	broad.mit.edu	37	chr3	134514572	134514572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttggctgctggtgccgGccgccttgggactgctgtgc	16	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134514572	T	T	134514572	1	4	191	0	1	0	0	0	0	0	0	0	5216	1218	42	3		3	EPHB1	3	134514572	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1020138	134514572	63507858	604	153014											
DZIP1L	199221	broad.mit.edu	37	chr3	137813580	137813580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtccaagaaggcactatcCcagctctgactcccagctct	7	15	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137813580	A	A	137813580	1	1	191	0	1	0	0	0	0	0	0	0	4904	638	22	2		2	DZIP1L	3	137813580	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3299008	137813580	60208850	605	153015											
CLSTN2	64084	broad.mit.edu	37	chr3	140178589	140178589	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagccgagaaggaaaccatCctctgcaactcagacaaaac	8	12	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140178589	A	A	140178589	2	1	191	1	0	0	0	0	0	0	0	1	3594	845	30	3		3	CLSTN2	3	140178589	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2365009	140178589	57843841	606	153016											
TRIM42	287015	broad.mit.edu	37	chr3	140401413	140401413	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaattgccccatgtgcagcCggctgcgcctgcactcattc	9	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140401413	A	A	140401413	2	1	191	1	0	0	0	0	0	0	0	1	16641	643	23	1		1	TRIM42	3	140401413	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	222824	140401413	57621017	607	153017											
TRPC1	7220	broad.mit.edu	37	chr3	142499758	142499758	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccggaattctcgtgaattgGaagttattctaaaccatacg	8	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142499758	T	T	142499758	4	4	191	1	0	0	0	0	0	1	0	0	16703	1175	41	3	763	3	TRPC1	3	142499758	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2098345	142499758	55522672	608	153018											
PAQR9	344838	broad.mit.edu	37	chr3	142681453	142681453	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacgaagacgaaggtgcgCagcgcgaacgggtaggtaca	16	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142681453	A	A	142681453	2	1	191	1	0	0	0	0	0	0	0	1	11536	697	25	3		3	PAQR9	3	142681453	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	181695	142681453	55340977	609	153019											
PLSCR4	57088	broad.mit.edu	37	chr3	145914458	145914458	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagccataggttgagcaTggcccacgaactctcatcac	8	15	2	1	rs141714822		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145914458	C	C	145914458	2	2	191	1	0	0	0	0	0	0	0	1	12207	1451	51	5		5	PLSCR4	3	145914458	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	3233005	145914458	52107972	610	153020											
CPB1	1360	broad.mit.edu	37	chr3	148562568	148562568	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtggtaagtatctggcTagccattttgcatgtatcca	11	7	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148562568	A	A	148562568	1	1	191	0	1	0	0	0	0	0	0	0	3828	1537	53	5		5	CPB1	3	148562568	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2648110	148562568	49459862	611	153021											
CP	1356	broad.mit.edu	37	chr3	148926985	148926985	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtaaagttaacatgtctGctgtaatcttacaatacatt	5	6	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148926985	A	A	148926985	1	1	191	0	1	0	0	0	0	0	0	0	3819	1334	46	4		4	CP	3	148926985	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	364417	148926985	49095445	612	153022											
SIAH2	6478	broad.mit.edu	37	chr3	150460046	150460046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgatggccgcagccacaCcgtcatgaatcgaacggggc	12	13	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150460046	A	A	150460046	3	1	191	1	0	0	0	0	1	0	0	0	14413	507	18	3	121	3	SIAH2	3	150460046	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1533061	150460046	47562384	613	153023											
MED12L	116931	broad.mit.edu	37	chr3	150881588	150881588	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactagtaggagacaataatAcagtgatgacagggtgtcgt	12	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150881588	G	G	150881588	1	3	191	0	1	0	0	0	0	0	0	0	9522	406	14	5		5	MED12L	3	150881588	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	421542	150881588	47140842	614	153024											
MED12L	116931	broad.mit.edu	37	chr3	151078261	151078261	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtatatttttctcctcaGgttgtgtggtgtggtcaagc	11	7	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151078261	T	T	151078261	5	4	191	1	0	0	0	0	0	0	1	0	9522	1014	35	2	2794	2	MED12L	3	151078261	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	196673	151078261	46944169	615	153025											
P2RY1	5028	broad.mit.edu	37	chr3	152554428	152554428	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacgatgaacttgagggCccggcttgattttcagaccc	11	10	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152554428	T	T	152554428	3	4	191	1	0	0	0	0	1	0	0	0	11440	739	26	4	859	4	P2RY1	3	152554428	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1476167	152554428	45468002	616	153026											
DHX36	170506	broad.mit.edu	37	chr3	154017577	154017577	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatacacatcatataTaattcaaataccactctttg	1	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154017577	G	G	154017577	1	3	191	0	1	0	0	0	0	0	0	0	4549	1421	49	5		5	DHX36	3	154017577	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1463149	154017577	44004853	617	153027											
KCNAB1	7881	broad.mit.edu	37	chr3	155893779	155893779	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcttgtggtatcccacAcatacacaaacctgtcggct	7	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155893779	G	G	155893779	1	3	191	0	1	0	0	0	0	0	0	0	8079	174	6	5		5	KCNAB1	3	155893779	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1876202	155893779	42128651	618	153028											
LEKR1	389170	broad.mit.edu	37	chr3	156763572	156763572	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggaagctccctacagcGtgcacgctctttcagagagt	11	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156763572	T	T	156763572	1	4	191	0	1	0	0	0	0	0	0	0	8789	1160	40	3		3	LEKR1	3	156763572	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	869793	156763572	41258858	619	153029											
CCNL1	57018	broad.mit.edu	37	chr3	156866174	156866174	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggctgcatctgagtgatcCcgagacttgctctgagatcg	12	10	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156866174	A	A	156866174	2	1	191	1	0	0	0	0	0	0	0	1	2961	610	22	2		2	CCNL1	3	156866174	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	102602	156866174	41156256	620	153030											
VEPH1	79674	broad.mit.edu	37	chr3	157178033	157178033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatctgccttggtaattgCagccagagacaggtagttag	13	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157178033	A	A	157178033	3	1	191	1	0	0	0	0	1	0	0	0	17281	710	25	3	2201	3	VEPH1	3	157178033	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	311859	157178033	40844397	621	153031											
RSRC1	51319	broad.mit.edu	37	chr3	157994009	157994009	+	Intron	DEL	G	-	-													tgggcattttcggccaccatGgcgaatacgaatcctatata							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	157994009	-	-	157994009	6	5	191	0	1	1	0	1	0	0	0	0	13825	1363	47	0		0	RSRC1	3	157994009	Intron	DEL	G	TCGA-64-5781-01A-01D-1625-08	815976	157994009	40028421	622	153032											
MFSD1	64747	broad.mit.edu	37	chr3	158537473	158537473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttcactaatctgtgccTtggctcttgcctacttggat	7	11	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158537473	A	A	158537473	3	1	191	1	0	0	0	0	1	0	0	0	9620	1606	56	5	865	5	MFSD1	3	158537473	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	543464	158537473	39484957	623	153033											
MFSD1	64747	broad.mit.edu	37	chr3	158538032	158538032	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attaaattaactgatgtaaaGgacttctccttacccctgtg	6	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158538032	C	C	158538032	3	2	191	1	0	0	0	0	1	0	0	0	9620	991	35	4	961	4	MFSD1	3	158538032	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	559	158538032	39484398	624	153034											
IL12A	3592	broad.mit.edu	37	chr3	159706910	159706910	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccacaggtctgcatccaGcggctcgccctgtgtccctg	12	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159706910	T	T	159706910	3	4	191	1	0	0	0	0	1	0	0	0	7694	971	34	3	69	3	IL12A	3	159706910	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1168878	159706910	38315520	625	153035											
SI	6476	broad.mit.edu	37	chr3	164724667	164724667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgtaatgcaaaactgatGttccatcactaagaatctgc	6	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164724667	T	T	164724667	3	4	191	1	0	0	0	0	1	0	0	0	14410	1377	48	3	1188	3	SI	3	164724667	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5017757	164724667	33297763	626	153036											
SI	6476	broad.mit.edu	37	chr3	164727003	164727003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattatttgagccaagtaCtaattttgcataatcactgc	6	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164727003	A	A	164727003	1	1	191	0	1	0	0	0	0	0	0	0	14410	580	20	3		3	SI	3	164727003	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2336	164727003	33295427	627	153037											
SI	6476	broad.mit.edu	37	chr3	164777083	164777083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaatatcagtgacctgtGtatcctgaaagttagaagat	9	6	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164777083	T	T	164777083	3	4	191	1	0	0	0	0	1	0	0	0	14410	1377	48	3	4484	3	SI	3	164777083	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	50080	164777083	33245347	628	153038											
SI	6476	broad.mit.edu	37	chr3	164777759	164777759	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagtgacttataattccaGcgacttagttggaatccaag	8	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164777759	T	T	164777759	2	4	191	1	0	0	0	0	0	0	0	1	14410	958	34	3		3	SI	3	164777759	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	676	164777759	33244671	629	153039											
BCHE	590	broad.mit.edu	37	chr3	165548187	165548187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaggatttccaccaaagGctgctatatttttttgaacc	6	8	0	1	rs114706984	byFrequency;by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165548187	T	T	165548187	3	4	191	1	0	0	0	0	1	0	0	0	1363	1203	42	3	1185	3	BCHE	3	165548187	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	770428	165548187	32474243	630	153040											
GOLIM4	27333	broad.mit.edu	37	chr3	167742850	167742850	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaccttgattattagggtCatctgctgggtttatatctt	8	8	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167742850	A	A	167742850	3	1	191	1	0	0	0	0	1	0	0	0	6630	826	29	3	449	3	GOLIM4	3	167742850	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2194663	167742850	30279580	631	153041											
SLC7A14	57709	broad.mit.edu	37	chr3	170184886	170184886	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatttgcaatcagggccTctgagttctgtttgtgtttg	10	8	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170184886	C	C	170184886	3	2	191	1	0	0	0	0	1	0	0	0	14810	1551	54	5	46	5	SLC7A14	3	170184886	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2442036	170184886	27837544	632	153042											
TNIK	23043	broad.mit.edu	37	chr3	170811560	170811560	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgccataggcattctctgTgaaagctttaatgtaaaaac	7	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170811560	A	A	170811560	1	1	191	0	1	0	0	0	0	0	0	0	16436	1711	59	5		5	TNIK	3	170811560	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	626674	170811560	27210870	633	153043											
PLD1	5337	broad.mit.edu	37	chr3	171394595	171394595	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaatgtcatgccagggcatCcggggcgtggagtacctgtc	15	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171394595	A	A	171394595	2	1	191	1	0	0	0	0	0	0	0	1	12140	842	30	3		3	PLD1	3	171394595	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	583035	171394595	26627835	634	153044											
PLD1	5337	broad.mit.edu	37	chr3	171404495	171404495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcatgaggtctagtgagtCcttgctcagactcactggac	11	11	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171404495	A	A	171404495	3	1	191	1	0	0	0	0	1	0	0	0	12140	855	30	3	1425	3	PLD1	3	171404495	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	9900	171404495	26617935	635	153045											
SPATA16	83893	broad.mit.edu	37	chr3	172641962	172641962	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctagaattctctaatatttGtacattggacaaatataaaa	4	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172641962	C	C	172641962	1	2	191	0	1	0	0	0	0	0	0	0	15117	1392	48	4		4	SPATA16	3	172641962	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1237467	172641962	25380468	636	153046											
SPATA16	83893	broad.mit.edu	37	chr3	172835507	172835507	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattctccaaactcctactGcttcctgcatccatcgatcc	4	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172835507	T	T	172835507	3	4	191	1	0	0	0	0	1	0	0	0	15117	1310	46	3	1734	3	SPATA16	3	172835507	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	193545	172835507	25186923	637	153047											
MRPL47	57129	broad.mit.edu	37	chr3	179316492	179316492	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgctctggacttggcattgGcaatctctgccgcttggcct	11	14	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179316492	C	C	179316492	3	2	191	1	0	0	0	0	1	0	0	0	9905	1203	42	4	395	4	MRPL47	3	179316492	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	6480985	179316492	18705938	638	153048											
PEX5L	51555	broad.mit.edu	37	chr3	179537683	179537683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggttacttggttctgggCttcttggttctcagatatcc	11	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179537683	A	A	179537683	3	1	191	1	0	0	0	0	1	0	0	0	11844	797	28	3	1004	3	PEX5L	3	179537683	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	221191	179537683	18484747	639	153049											
KLHL24	54800	broad.mit.edu	37	chr3	183368109	183368109	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagaagatccctaatagtCatttctcaacaattatatag	4	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183368109	A	A	183368109	1	1	191	0	1	0	0	0	0	0	0	0	8450	841	29	3		3	KLHL24	3	183368109	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	3830426	183368109	14654321	640	153050											
ABCC5	10057	broad.mit.edu	37	chr3	183643372	183643372	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccagcaccataatcctatCggagcctagaaccgtgtgca	10	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183643372	A	A	183643372	3	1	191	1	0	0	0	0	1	0	0	0	56	884	31	3	138	3	ABCC5	3	183643372	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	275263	183643372	14379058	641	153051											
HTR3C	170572	broad.mit.edu	37	chr3	183774708	183774708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcactgcctatatcagCagtgaaggtcgaattaagta	10	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183774708	A	A	183774708	3	1	191	1	0	0	0	0	1	0	0	0	7516	709	25	3	453	3	HTR3C	3	183774708	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	131336	183774708	14247722	642	153052											
EIF2B5	8893	broad.mit.edu	37	chr3	183860205	183860205	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcatctgtgtgtctcGctgcctcatagaagaaccag	13	10	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183860205	T	T	183860205	1	4	191	0	1	0	0	0	0	0	0	0	5044	1102	38	3		3	EIF2B5	3	183860205	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	85497	183860205	14162225	643	153053											
CHRD	8646	broad.mit.edu	37	chr3	184104585	184104585	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgggtcctgggatctggAgcaaggggcctggacactcc	15	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184104585	T	T	184104585	1	4	191	0	1	0	0	0	0	0	0	0	3403	319	11	5		5	CHRD	3	184104585	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	244380	184104585	13917845	644	153054											
EPHB3	2049	broad.mit.edu	37	chr3	184293614	184293614	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattcatcctcttctctcccAcagcctgtccccctgggagc	6	19	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184293614	T	T	184293614	1	4	191	0	1	0	0	0	0	0	0	0	5218	174	6	5		5	EPHB3	3	184293614	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	189029	184293614	13728816	645	153055											
IGF2BP2	10644	broad.mit.edu	37	chr3	185541102	185541102	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacgctcgggctccgccttcGggcgcccccaaggggtctcc	13	19	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185541102	C	C	185541102	1	2	191	0	1	0	0	0	0	0	0	0	7644	1131	39	4		4	IGF2BP2	3	185541102	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1247488	185541102	12481328	646	153056											
DGKG	1608	broad.mit.edu	37	chr3	186015086	186015086	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttctgaaggccacaggagGaccagatctgcataagattg	13	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186015086	T	T	186015086	1	4	191	0	1	0	0	0	0	0	0	0	4509	1189	41	3		3	DGKG	3	186015086	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	473984	186015086	12007344	647	153057											
RTP2	344892	broad.mit.edu	37	chr3	187416829	187416829	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaggaggggtggagaaGgtgggcatcccagagaagcc	20	6	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187416829	C	C	187416829	1	2	191	0	1	0	0	0	0	0	0	0	13845	1015	35	4		4	RTP2	3	187416829	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1401743	187416829	10605601	648	153058											
TPRG1	285386	broad.mit.edu	37	chr3	188707188	188707188	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttaggttgaggagggcaGgtacagtttgctgaaggatg	16	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	188707188	T	T	188707188	1	4	191	0	1	0	0	0	0	0	0	0	16542	1015	35	2		2	TPRG1	3	188707188	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1290359	188707188	9315242	649	153059											
TP63	8626	broad.mit.edu	37	chr3	189607033	189607033	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaaggctggtagtttaGgcccttgataaaatttaacc	10	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189607033	C	C	189607033	1	2	191	0	1	0	0	0	0	0	0	0	16516	1015	35	4		4	TP63	3	189607033	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	899845	189607033	8415397	650	153060											
IL1RAP	3556	broad.mit.edu	37	chr3	190363614	190363614	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgcatctttgaccgagAcagtctgcctgggggaagta	14	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190363614	G	G	190363614	3	3	191	1	0	0	0	0	1	0	0	0	7730	275	10	5	1382	5	IL1RAP	3	190363614	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	756581	190363614	7658816	651	153061											
OSTN	344901	broad.mit.edu	37	chr3	190930383	190930383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacactgacactgtggaGctcaggaaaagtcctctcag	11	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190930383	T	T	190930383	3	4	191	1	0	0	0	0	1	0	0	0	11393	971	34	3	64	3	OSTN	3	190930383	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	566769	190930383	7092047	652	153062											
ATP13A3	79572	broad.mit.edu	37	chr3	194169424	194169424	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	attattaaacgaaagcacagGaatcagtatcgaacaccaaa	6	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	194169424	C	C	194169424	1	2	191	0	1	0	0	0	0	0	0	0	1129	1189	41	4		4	ATP13A3	3	194169424	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3239041	194169424	3853006	653	153063											
TNK2	10188	broad.mit.edu	37	chr3	195593961	195593962	+	Intron	DNP	CC	AA	AA													ggggaagaggggagtcggagCcagggggcgtggggctgggg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	195593962	AA	AA	195593961	1	1	191	0	1	0	0	0	0	0	0	0	16441	754	26	3		3	TNK2	3	195593961	Intron	DNP	CC	TCGA-64-5781-01A-01D-1625-08	1424537	195593961	2428469	654	153064											
TFRC	7037	broad.mit.edu	37	chr3	195792371	195792371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatttttatctctttcaGcacattgctcacagtgagct	6	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195792371	T	T	195792371	3	4	191	1	0	0	0	0	1	0	0	0	15935	962	34	3	1181	3	TFRC	3	195792371	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	198410	195792371	2230059	655	153065											
PIGG	54872	broad.mit.edu	37	chr4	533009	533009	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattccagttttcacgtacAtcgttttggtgacatctctg	7	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	533009	G	G	533009	3	3	191	1	0	0	0	0	1	0	0	0	11983	217	8	5	2853	5	PIGG	4	533009	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08		533009	190621267	656	153066											
GAK	2580	broad.mit.edu	37	chr4	844769	844769	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagccaggtcctgcttcctCatctctgcaatggtctttgg	9	12	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	844769	A	A	844769	3	1	191	1	0	0	0	0	1	0	0	0	6257	826	29	3	335	3	GAK	4	844769	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	311760	844769	190309507	657	153067											
NOP14	8602	broad.mit.edu	37	chr4	2951843	2951843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctctcctctgtgtcctccCcgcctgaactgtcaccttct	6	19	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2951843	A	A	2951843	3	1	191	1	0	0	0	0	1	0	0	0	10631	623	22	2	1517	2	NOP14	4	2951843	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2107074	2951843	188202433	658	153068											
GRK4	2868	broad.mit.edu	37	chr4	3030840	3030840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtccatgttgtcacacacGttgaatgtatactgtgttac	8	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3030840	T	T	3030840	1	4	191	0	1	0	0	0	0	0	0	0	6857	1160	40	3		3	GRK4	4	3030840	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	78997	3030840	188123436	659	153069											
HTT	3064	broad.mit.edu	37	chr4	3149687	3149687	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagcaatttgtccttcCcatgctattggggtggagag	11	11	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3149687	T	T	3149687	1	4	191	0	1	0	0	0	0	0	0	0	7527	638	22	4		4	HTT	4	3149687	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	118847	3149687	188004589	660	153070											
OTOP1	133060	broad.mit.edu	37	chr4	4199402	4199402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtccgagtccagtttgcGggccggatttttggactcat	14	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4199402	T	T	4199402	3	4	191	1	0	0	0	0	1	0	0	0	11399	1116	39	1	687	1	OTOP1	4	4199402	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1049715	4199402	186954874	661	153071											
LYAR	55646	broad.mit.edu	37	chr4	4283675	4283675	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgatacccaagttggaggCgctaataccagcatgctgcc	10	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4283675	T	T	4283675	1	4	191	0	1	0	0	0	0	0	0	0	9191	783	27	4		4	LYAR	4	4283675	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	84273	4283675	186870601	662	153072											
C4orf50	389197	broad.mit.edu	37	chr4	5975560	5975560	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttccggacgagggaagcTatcttggcctgaaagggagg	15	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5975560	A	A	5975560	2	1	191	1	0	0	0	0	0	0	0	1	2299	1512	53	5		5	C4orf50	4	5975560	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	1691885	5975560	185178716	663	153073											
KIAA0232	9778	broad.mit.edu	37	chr4	6863811	6863811	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggggaacgtgcaatatggAcagattctaccagctccgta	11	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6863811	G	G	6863811	3	3	191	1	0	0	0	0	1	0	0	0	8233	275	10	5	1720	5	KIAA0232	4	6863811	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	888251	6863811	184290465	664	153074											
ABLIM2	84448	broad.mit.edu	37	chr4	8010869	8010869	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaaaggccacacaccatTgcttgtgggtttctgcctca	9	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8010869	A	A	8010869	1	1	191	0	1	0	0	0	0	0	0	0	95	1827	63	5		5	ABLIM2	4	8010869	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1147058	8010869	183143407	665	153075											
CPZ	8532	broad.mit.edu	37	chr4	8607646	8607646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtcattcttgctgagtGggggggcctcatgcctttgg	15	9	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8607646	T	T	8607646	1	4	191	0	1	0	0	0	0	0	0	0	3871	1363	47	2		2	CPZ	4	8607646	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	596777	8607646	182546630	666	153076											
SLC2A9	56606	broad.mit.edu	37	chr4	9836505	9836505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactccttgtcagtcatacCtgaatgaatgggaagaggag	12	7	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9836505	A	A	9836505	3	1	191	1	0	0	0	0	1	0	0	0	14666	695	24	2	211	2	SLC2A9	4	9836505	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1228859	9836505	181317771	667	153077											
WDR1	9948	broad.mit.edu	37	chr4	10079203	10079203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaactctatgccagcgacCcctgcaaacccactgactcc	6	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10079203	A	A	10079203	1	1	191	0	1	0	0	0	0	0	0	0	17399	638	22	2		2	WDR1	4	10079203	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	242698	10079203	181075073	668	153078											
RAB28	9364	broad.mit.edu	37	chr4	13378359	13378359	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattgcaaaaatatgataTagcaggtgattccaaaaata	6	4	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13378359	C	C	13378359	1	2	191	0	1	0	0	0	0	0	0	0	13024	1421	49	5		5	RAB28	4	13378359	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	3299156	13378359	177775917	669	153079											
BOD1L	259282	broad.mit.edu	37	chr4	13583842	13583842	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataattgtgaacaaacaaaTacgaaaagcacatctcacct	4	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13583842	A	A	13583842	1	1	191	0	1	0	0	0	0	0	0	0	1489	1421	49	5		5	BOD1L	4	13583842	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	205483	13583842	177570434	670	153080											
BOD1L	259282	broad.mit.edu	37	chr4	13604728	13604728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtggcatctccttgagCaacatgttcttcagcagctg	10	10	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13604728	A	A	13604728	3	1	191	1	0	0	0	0	1	0	0	0	1489	710	25	3	5427	3	BOD1L	4	13604728	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	20886	13604728	177549548	671	153081											
LDB2	9079	broad.mit.edu	37	chr4	16587477	16587477	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattttaacttcttggttcaGgatgcatataaacctctgga	7	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16587477	C	C	16587477	1	2	191	0	1	0	0	0	0	0	0	0	8768	1015	35	4		4	LDB2	4	16587477	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2982749	16587477	174566799	672	153082											
LDB2	9079	broad.mit.edu	37	chr4	16590283	16590283	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttccccttgagtgaaatGaaggaggaaaaaaaagaaaa	9	4	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16590283	A	A	16590283	1	1	191	0	1	0	0	0	0	0	0	0	8768	1305	45	4		4	LDB2	4	16590283	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2806	16590283	174563993	673	153083											
SLIT2	9353	broad.mit.edu	37	chr4	20543244	20543244	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacttcacttgtgatgacggTaagaaatacttatcaactct	7	8	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20543244	C	C	20543244	5	2	191	1	0	0	0	0	0	0	1	0	14854	1652	57	5	2223	5	SLIT2	4	20543244	Splice_Site	SNP	T	TCGA-64-5781-01A-01D-1625-08	3952961	20543244	170611032	674	153084											
PPARGC1A	10891	broad.mit.edu	37	chr4	23797582	23797582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagccagtttagatacacaCtttgctgatggccattaact	7	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23797582	A	A	23797582	1	1	191	0	1	0	0	0	0	0	0	0	12396	580	20	3		3	PPARGC1A	4	23797582	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3254338	23797582	167356694	675	153085											
PPARGC1A	10891	broad.mit.edu	37	chr4	23816059	23816059	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatacaactcggattgctcCggccctttcttggtggagtt	11	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23816059	A	A	23816059	2	1	191	1	0	0	0	0	0	0	0	1	12396	639	23	1		1	PPARGC1A	4	23816059	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	18477	23816059	167338217	676	153086											
PPARGC1A	10891	broad.mit.edu	37	chr4	23833288	23833288	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcagcgcatcaaatgaGggcaatccgtcttcatccac	8	13	5	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23833288	A	A	23833288	2	1	191	1	0	0	0	0	0	0	0	1	12396	987	35	4		4	PPARGC1A	4	23833288	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	17229	23833288	167320988	677	153087											
TBC1D1	23216	broad.mit.edu	37	chr4	38008381	38008381	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtgctgggattacaggcgTgagccactgcgcctggccca	14	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38008381	A	A	38008381	1	1	191	0	1	0	0	0	0	0	0	0	15716	1711	59	5		5	TBC1D1	4	38008381	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	14175093	38008381	153145895	678	153088											
GABRA2	2555	broad.mit.edu	37	chr4	46305517	46305517	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagattctctgttaagccaGaatgaaacttgggagagaat	10	6	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46305517	T	T	46305517	3	4	191	1	0	0	0	0	1	0	0	0	6221	933	33	3	551	3	GABRA2	4	46305517	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	8297136	46305517	144848759	679	153089											
GABRA4	2557	broad.mit.edu	37	chr4	46930427	46930427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaacttcccagtagcccCtatggtattaactgtggtct	8	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46930427	A	A	46930427	3	1	191	1	0	0	0	0	1	0	0	0	6223	681	24	2	188	2	GABRA4	4	46930427	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	624910	46930427	144223849	680	153090											
GABRA4	2557	broad.mit.edu	37	chr4	46981053	46981054	+	Frame_Shift_Ins	INS	-	A	A													tcgaaaatacctaccatttcINSaacatcagaaacaggtccaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46981054	A	A	46981053	7	5	191	1	0	1	1	0	0	0	0	0	6223	835	29	0	1424	0	GABRA4	4	46981053	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	50626	46981053	144173223	681	153091											
CORIN	10699	broad.mit.edu	37	chr4	47625771	47625771	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcgcccacagtctaccaagGagcagaagacacagtttgtg	12	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47625771	T	T	47625771	1	4	191	0	1	0	0	0	0	0	0	0	3784	1189	41	3		3	CORIN	4	47625771	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	644718	47625771	143528505	682	153092											
FRYL	285527	broad.mit.edu	37	chr4	48559204	48559204	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaccaaacttgtcatacCatgaaatattaaaaaatgtt	3	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48559204	T	T	48559204	1	4	191	0	1	0	0	0	0	0	0	0	6124	609	21	4		4	FRYL	4	48559204	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	933433	48559204	142595072	683	153093											
CWH43	80157	broad.mit.edu	37	chr4	49019260	49019260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaattatttcttttttctGtttagttctgtggctgcttg	7	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49019260	T	T	49019260	1	4	191	0	1	0	0	0	0	0	0	0	4106	1392	48	3		3	CWH43	4	49019260	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	460056	49019260	142135016	684	153094											
PDGFRA	5156	broad.mit.edu	37	chr4	55138808	55138808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgggtgtgatagcttcaGggtgtgtatcttttgtcatg	13	4	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55138808	T	T	55138808	1	4	191	0	1	0	0	0	0	0	0	0	11755	1015	35	2		2	PDGFRA	4	55138808	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	6119548	55138808	136015468	685	153095											
KDR	3791	broad.mit.edu	37	chr4	55971037	55971037	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattggcagaggctgtgggCcaagcttgtaccatgtgagg	17	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55971037	A	A	55971037	3	1	191	1	0	0	0	0	1	0	0	0	8209	739	26	3	2382	3	KDR	4	55971037	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	832229	55971037	135183239	686	153096											
EXOC1	55763	broad.mit.edu	37	chr4	56765816	56765816	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctaaatatggtcatactcaGagatgttattttattttttc	6	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56765816	A	A	56765816	1	1	191	0	1	0	0	0	0	0	0	0	5343	957	33	4		4	EXOC1	4	56765816	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	794779	56765816	134388460	687	153097											
KIAA1211	57482	broad.mit.edu	37	chr4	57173812	57173812	+	Frame_Shift_Del	DEL	C	-	-													aggatctgttcctgaccagtCccatggaaattgtgactcag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57173812	-	-	57173812	7	5	191	1	0	1	0	1	0	0	0	0	8285	855	30	0	238	0	KIAA1211	4	57173812	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	407996	57173812	133980464	688	153098											
KIAA1211	57482	broad.mit.edu	37	chr4	57182846	57182846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcaaacacccgaggccGggaggaaaggtaggtagctg	14	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57182846	T	T	57182846	3	4	191	1	0	0	0	0	1	0	0	0	8285	1116	39	1	3196	1	KIAA1211	4	57182846	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	9034	57182846	133971430	689	153099											
LPHN3	23284	broad.mit.edu	37	chr4	62845314	62845314	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgacctccttctggatGtgatcacgtgggttggaatt	11	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62845314	T	T	62845314	3	4	191	1	0	0	0	0	1	0	0	0	9004	1377	48	3	2693	3	LPHN3	4	62845314	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5662468	62845314	128308962	690	153100											
LPHN3	23284	broad.mit.edu	37	chr4	62849169	62849169	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcacctggatgttcctGgagggggtgcagctttatat	13	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62849169	T	T	62849169	2	4	191	1	0	0	0	0	0	0	0	1	9004	1335	47	2		2	LPHN3	4	62849169	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	3855	62849169	128305107	691	153101											
TECRL	253017	broad.mit.edu	37	chr4	65155456	65155456	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggatgagacaacattacAttgatgaaatgattcccagc	9	7	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65155456	T	T	65155456	3	4	191	1	0	0	0	0	1	0	0	0	15868	214	8	5	303	5	TECRL	4	65155456	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2306287	65155456	125998820	692	153102											
EPHA5	2044	broad.mit.edu	37	chr4	66270133	66270133	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaccactgccaacaaaatGactcccactgtcacagacac	4	15	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66270133	T	T	66270133	2	4	191	1	0	0	0	0	0	0	0	1	5212	1277	45	3		3	EPHA5	4	66270133	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1114677	66270133	124884143	693	153103											
EPHA5	2044	broad.mit.edu	37	chr4	66356246	66356246	+	Frame_Shift_Del	DEL	C	-	-													gtgtttttcaggccgctttgCcggggaaggtacctgacatg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66356246	-	-	66356246	7	5	191	1	0	1	0	1	0	0	0	0	5212	726	26	0	1918	0	EPHA5	4	66356246	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	86113	66356246	124798030	694	153104											
STAP1	26228	broad.mit.edu	37	chr4	68456587	68456587	+	Intron	DEL	T	-	-													aataaaatggagactaaccaTttgtttcattgtagcattcc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68456587	-	-	68456587	6	5	191	0	1	1	0	1	0	0	0	0	15370	1508	52	0		0	STAP1	4	68456587	Intron	DEL	T	TCGA-64-5781-01A-01D-1625-08	2100341	68456587	122697689	695	153105											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68934442	68934442	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctggcctgccatggccattCcccttccatagctgtttccc	8	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68934442	G	G	68934442	3	3	191	1	0	0	0	0	1	0	0	0	16366	864	30	4	683	4	TMPRSS11F	4	68934442	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	477855	68934442	122219834	696	153106											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68934589	68934589	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaaggaggaaaaaagtAtattctgatttgctttggtt	9	2	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68934589	G	G	68934589	1	3	191	0	1	0	0	0	0	0	0	0	16366	464	16	5		5	TMPRSS11F	4	68934589	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	147	68934589	122219687	697	153107											
UGT2B7	7364	broad.mit.edu	37	chr4	69964461	69964461	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgaattttcagtagaaatGattctatagtcttctttcag	6	5	5	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69964461	T	T	69964461	1	4	191	0	1	0	0	0	0	0	0	0	17088	1305	45	3		3	UGT2B7	4	69964461	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1029872	69964461	121189815	698	153108											
UGT2B11	10720	broad.mit.edu	37	chr4	70071210	70071210	+	Missense_Mutation	SNP	T	G	G													agtgttacctagaaggtcatTctggggtatccacttgtaca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70071210	G	G	70071210	3	3	191	1	0	0	0	0	1	0	0	0	17083	1783	62	5	523	5	UGT2B11	4	70071210	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	106749	70071210	121083066	699	153109	656	2									
UGT2B11	10720	broad.mit.edu	37	chr4	70071213	70071213	+	Missense_Mutation	SNP	G	T	T													gttacctagaaggtcattctGgggtatccacttgtacagcc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70071213	T	T	70071213	3	4	191	1	0	0	0	0	1	0	0	0	17083	1357	47	2	526	2	UGT2B11	4	70071213	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3	70071213	121083063	700	153110	656	2									
UGT2B4	7363	broad.mit.edu	37	chr4	70346329	70346329	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttcatttattgggtttcCcagcttccagcctcagacgt	9	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346329	A	A	70346329	1	1	191	0	1	0	0	0	0	0	0	0	17087	638	22	2		2	UGT2B4	4	70346329	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	275116	70346329	120807947	701	153111											
UGT2A1	10941	broad.mit.edu	37	chr4	70460813	70460813	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtattgaatttatttGctattaaacagttacttaac	4	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70460813	C	C	70460813	1	2	191	0	1	0	0	0	0	0	0	0	17079	1334	46	4		4	UGT2A1	4	70460813	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	114484	70460813	120693463	702	153112											
CSN2	1447	broad.mit.edu	37	chr4	70823494	70823494	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagaggctgtggctggaaaGaggggtagattttatcctgg	16	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823494	A	A	70823494	3	1	191	1	0	0	0	0	1	0	0	0	3982	942	33	4	515	4	CSN2	4	70823494	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	362681	70823494	120330782	703	153113											
ODAM	54959	broad.mit.edu	37	chr4	71067918	71067918	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtactctgggtggccaaAgagcatattttcaacgatca	10	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71067918	T	T	71067918	1	4	191	0	1	0	0	0	0	0	0	0	10919	87	3	5		5	ODAM	4	71067918	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	244424	71067918	120086358	704	153114											
MUC7	4589	broad.mit.edu	37	chr4	71346651	71346651	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgttcattagaaagtcctatAaatgtctgcacaaacgctgt	7	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71346651	G	G	71346651	3	3	191	1	0	0	0	0	1	0	0	0	10075	363	13	5	196	5	MUC7	4	71346651	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	278733	71346651	119807625	705	153115											
MUC7	4589	broad.mit.edu	37	chr4	71346954	71346954	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attccccagctccacaagacAccacagctgccccacccaca	4	21	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71346954	G	G	71346954	3	3	191	1	0	0	0	0	1	0	0	0	10075	159	6	5	499	5	MUC7	4	71346954	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	303	71346954	119807322	706	153116											
SHROOM3	57619	broad.mit.edu	37	chr4	77675466	77675466	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctgtgtgccgttccaggtCactcagttgttcagaaagag	12	9	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77675466	T	T	77675466	3	4	191	1	0	0	0	0	1	0	0	0	14408	838	29	4	3856	4	SHROOM3	4	77675466	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6328512	77675466	113478810	707	153117											
ANKRD56	345079	broad.mit.edu	37	chr4	77817745	77817745	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacaacctgcagcccctcttCagaagcccccggggagtctt	10	16	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77817745	T	T	77817745	3	4	191	1	0	0	0	0	1	0	0	0	682	835	29	4	1127	4	ANKRD56	4	77817745	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	142279	77817745	113336531	708	153118											
FRAS1	80144	broad.mit.edu	37	chr4	79238711	79238711	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggctatcccacaagaacaTagatttacttttttccaata	5	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79238711	C	C	79238711	1	2	191	0	1	0	0	0	0	0	0	0	6102	1421	49	5		5	FRAS1	4	79238711	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1420966	79238711	111915565	709	153119											
FRAS1	80144	broad.mit.edu	37	chr4	79371325	79371325	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtctgtagcacgcatcacaGaacagcacttgaaagtgaca	10	10	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79371325	T	T	79371325	4	4	191	1	0	0	0	0	0	1	0	0	6102	943	33	3	6548	3	FRAS1	4	79371325	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	132614	79371325	111782951	710	153120											
PAQR3	152559	broad.mit.edu	37	chr4	79847698	79847698	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacaataggagcaccaattcCtccattgagccaaacccagt	6	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79847698	G	G	79847698	3	3	191	1	0	0	0	0	1	0	0	0	11530	690	24	4	268	4	PAQR3	4	79847698	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	476373	79847698	111306578	711	153121											
GK2	2712	broad.mit.edu	37	chr4	80327728	80327728	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatatcttgctccaattaGcattaccatgctactcacta	4	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80327728	T	T	80327728	3	4	191	1	0	0	0	0	1	0	0	0	6485	962	34	3	38	3	GK2	4	80327728	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	480030	80327728	110826548	712	153122											
C4orf22	255119	broad.mit.edu	37	chr4	81309141	81309141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtggggtatactggagCctccacacactggtttggca	16	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81309141	A	A	81309141	1	1	191	0	1	0	0	0	0	0	0	0	2278	754	26	3		3	C4orf22	4	81309141	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	981413	81309141	109845135	713	153123											
RASGEF1B	153020	broad.mit.edu	37	chr4	82366732	82366732	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgttaaaacactcccgagcTacgtcaatgaaatactcaat	5	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82366732	A	A	82366732	2	1	191	1	0	0	0	0	0	0	0	1	13178	1509	53	5		5	RASGEF1B	4	82366732	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	1057591	82366732	108787544	714	153124											
CDS1	1040	broad.mit.edu	37	chr4	85556555	85556555	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaccttaaagattagcCactggagaacatttccaaca	6	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85556555	T	T	85556555	1	4	191	0	1	0	0	0	0	0	0	0	3207	609	21	4		4	CDS1	4	85556555	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3189823	85556555	105597721	715	153125											
PTPN13	5783	broad.mit.edu	37	chr4	87693953	87693953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccttcccctctaccaccgGatatggctcctgggcagagt	9	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87693953	T	T	87693953	3	4	191	1	0	0	0	0	1	0	0	0	12888	1174	41	3	5328	3	PTPN13	4	87693953	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2137398	87693953	103460323	716	153126											
SLC10A6	345274	broad.mit.edu	37	chr4	87770178	87770178	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccactgtgaaaacgagctCcaggtttccatgcacctcca	7	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87770178	A	A	87770178	4	1	191	1	0	0	0	0	0	1	0	0	14491	864	30	3	1066	3	SLC10A6	4	87770178	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	76225	87770178	103384098	717	153127											
DMP1	1758	broad.mit.edu	37	chr4	88583789	88583789	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgagcttgatgacaacaacAcaatggaagaagtcaagagt	11	7	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88583789	T	T	88583789	3	4	191	1	0	0	0	0	1	0	0	0	4623	159	6	5	877	5	DMP1	4	88583789	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	813611	88583789	102570487	718	153128											
ABCG2	9429	broad.mit.edu	37	chr4	89052318	89052318	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaagccgaagagctgctgaGaactgtaagttttctctcac	10	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89052318	A	A	89052318	2	1	191	1	0	0	0	0	0	0	0	1	69	933	33	4		4	ABCG2	4	89052318	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	468529	89052318	102101958	719	153129											
FAM13A	10144	broad.mit.edu	37	chr4	89709140	89709140	+	Intron	DEL	A	-	-													agttcatcagtgatcaccttAaaaaatctgtgcctacagtt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89709140	-	-	89709140	6	5	191	0	1	1	0	1	0	0	0	0	5498	377	13	0		0	FAM13A	4	89709140	Intron	DEL	A	TCGA-64-5781-01A-01D-1625-08	656822	89709140	101445136	720	153130											
ADH1A	124	broad.mit.edu	37	chr4	100200544	100200544	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctagacaatcccctatggtaGaaaaaaaagcaaaacagaaa	6	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100200544	A	A	100200544	1	1	191	0	1	0	0	0	0	0	0	0	307	957	33	4		4	ADH1A	4	100200544	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	10491404	100200544	90953732	721	153131											
NHEDC1	150159	broad.mit.edu	37	chr4	103822447	103822447	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatggttccaagtggggtgCggagactcttgctgtttcta	13	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103822447	G	G	103822447	3	3	191	1	0	0	0	0	1	0	0	0	10495	768	27	4	276	4	NHEDC1	4	103822447	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3621903	103822447	87331829	722	153132											
C4orf21	55345	broad.mit.edu	37	chr4	113486350	113486350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcgctaacttcccttccaGcgtctggtgcgagaaattgc	9	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113486350	A	A	113486350	1	1	191	0	1	0	0	0	0	0	0	0	2277	986	34	4		4	C4orf21	4	113486350	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	9663903	113486350	77667926	723	153133											
C4orf21	55345	broad.mit.edu	37	chr4	113539234	113539234	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcttctttattatctccgTatacagcatcagtccacttg	4	12	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113539234	A	A	113539234	3	1	191	1	0	0	0	0	1	0	0	0	2277	1638	57	5	4442	5	C4orf21	4	113539234	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	52884	113539234	77615042	724	153134											
NDST3	9348	broad.mit.edu	37	chr4	119174651	119174651	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtattcttttttttttTaggtttgattctcataaagg	8	3	2	1	rs5861383		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119174651	C	C	119174651	1	2	191	0	1	0	0	0	0	0	0	0	10352	1769	61	5		5	NDST3	4	119174651	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	5635417	119174651	71979625	725	153135											
FAT4	79633	broad.mit.edu	37	chr4	126412051	126412051	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccctaagccactcagcaTgcccaactcccaaccctctg	5	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126412051	A	A	126412051	3	1	191	1	0	0	0	0	1	0	0	0	5749	1464	51	5	14140	5	FAT4	4	126412051	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	7237400	126412051	64742225	726	153136											
INTU	27152	broad.mit.edu	37	chr4	128625376	128625376	+	Intron	DEL	C	-	-													aaaatccactatgaatttttCccccagtccgaggattacta							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128625376	-	-	128625376	6	5	191	0	1	1	0	1	0	0	0	0	7856	870	30	0		0	INTU	4	128625376	Intron	DEL	C	TCGA-64-5781-01A-01D-1625-08	2213325	128625376	62528900	727	153137											
PCDH10	57575	broad.mit.edu	37	chr4	134072090	134072090	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaccagagaactctcccccAggcactctcgtgatccagct	7	17	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134072090	C	C	134072090	2	2	191	1	0	0	0	0	0	0	0	1	11601	175	7	5		5	PCDH10	4	134072090	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	5446714	134072090	57082186	728	153138											
SMAD1	4086	broad.mit.edu	37	chr4	146463845	146463845	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgccctcagaaatcaacaGaggaggtaaaactaattgct	8	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146463845	A	A	146463845	3	1	191	1	0	0	0	0	1	0	0	0	14871	942	33	4	780	4	SMAD1	4	146463845	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	12391755	146463845	44690431	729	153139											
TTC29	83894	broad.mit.edu	37	chr4	147824814	147824814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagtggttccttacccaCttgtcttcagaattattgaa	7	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147824814	A	A	147824814	3	1	191	1	0	0	0	0	1	0	0	0	16822	564	20	3	991	3	TTC29	4	147824814	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1360969	147824814	43329462	730	153140											
ARHGAP10	79658	broad.mit.edu	37	chr4	148796291	148796291	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccgaaggctacctgtatgtCcaggaaaaaagtaagaggcc	12	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148796291	T	T	148796291	2	4	191	1	0	0	0	0	0	0	0	1	864	842	30	4		4	ARHGAP10	4	148796291	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	971477	148796291	42357985	731	153141											
DCLK2	166614	broad.mit.edu	37	chr4	151023641	151023641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttttaggtgagagttacGtgtgtgcatccaatgaacca	11	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151023641	T	T	151023641	3	4	191	1	0	0	0	0	1	0	0	0	4325	1145	40	3	439	3	DCLK2	4	151023641	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2227350	151023641	40130635	732	153142											
MAB21L2	10586	broad.mit.edu	37	chr4	151504190	151504190	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgccccaacatgatcgcCgctcaggccaagctggttta	10	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151504190	A	A	151504190	2	1	191	1	0	0	0	0	0	0	0	1	9230	639	23	1		1	MAB21L2	4	151504190	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	480549	151504190	39650086	733	153143											
LRBA	987	broad.mit.edu	37	chr4	151849739	151849739	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactgtcaaattatagctagCcagcactcccaacatgtcaa	5	12	2	0	rs61746090		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151849739	G	G	151849739	3	3	191	1	0	0	0	0	1	0	0	0	9018	739	26	4	8333	4	LRBA	4	151849739	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	345549	151849739	39304537	734	153144											
DCHS2	54798	broad.mit.edu	37	chr4	155156835	155156835	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattgaaaagctgctggcgAacactgccaagggtgttcct	12	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155156835	C	C	155156835	3	2	191	1	0	0	0	0	1	0	0	0	4321	246	9	5	1150	5	DCHS2	4	155156835	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	3307096	155156835	35997441	735	153145											
DCHS2	54798	broad.mit.edu	37	chr4	155219229	155219229	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atagaaaacattgactgggtCtctgcaaaactaaaaaccac	6	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155219229	A	A	155219229	3	1	191	1	0	0	0	0	1	0	0	0	4321	912	32	3	3910	3	DCHS2	4	155219229	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	62394	155219229	35935047	736	153146											
DCHS2	54798	broad.mit.edu	37	chr4	155256183	155256183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctgtgagcccaccaccGtcttgagcagagaccatcaa	9	14	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155256183	T	T	155256183	3	4	191	1	0	0	0	0	1	0	0	0	4321	1136	40	3	7865	3	DCHS2	4	155256183	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	36954	155256183	35898093	737	153147											
NPY2R	4887	broad.mit.edu	37	chr4	156136234	156136234	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcacagaggctaccaatgtCtaaggaagctgtggtgtgaa	12	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156136234	A	A	156136234	2	1	191	1	0	0	0	0	0	0	0	1	10704	900	32	3		3	NPY2R	4	156136234	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	880051	156136234	35018042	738	153148											
ETFDH	2110	broad.mit.edu	37	chr4	159601639	159601639	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catatcagtgctttcatgccTtaaaaattaagaaaaattat	4	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159601639	C	C	159601639	2	2	191	1	0	0	0	0	0	0	0	1	5313	1606	56	5		5	ETFDH	4	159601639	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	3465405	159601639	31552637	739	153149											
FNIP2	57600	broad.mit.edu	37	chr4	159780333	159780333	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagaagaagcacaaaggAatttccaggacttcttcttt	8	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159780333	T	T	159780333	3	4	191	1	0	0	0	0	1	0	0	0	6034	246	9	5	1016	5	FNIP2	4	159780333	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	178694	159780333	31373943	740	153150											
RAPGEF2	9693	broad.mit.edu	37	chr4	160264503	160264503	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcaaaagaaattcgtcaCgttggccgaatggcttcagt	10	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160264503	T	T	160264503	2	4	191	1	0	0	0	0	0	0	0	1	13152	535	19	4		4	RAPGEF2	4	160264503	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	484170	160264503	30889773	741	153151											
NPY1R	4886	broad.mit.edu	37	chr4	164246890	164246890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgtccatcatgttgtttctCctttttaggcgtatatatat	6	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164246890	A	A	164246890	3	1	191	1	0	0	0	0	1	0	0	0	10703	854	30	3	438	3	NPY1R	4	164246890	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3982387	164246890	26907386	742	153152											
NPY5R	4889	broad.mit.edu	37	chr4	164272461	164272461	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaacctgaagaaaattcaGatgttcatgaattgagagta	8	4	2	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164272461	A	A	164272461	3	1	191	1	0	0	0	0	1	0	0	0	10705	942	33	4	1038	4	NPY5R	4	164272461	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	25571	164272461	26881815	743	153153											
TLL1	7092	broad.mit.edu	37	chr4	166999245	166999245	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgtctttcactacaagcaCttggaaataaaatggaggtt	8	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166999245	G	G	166999245	1	3	191	0	1	0	0	0	0	0	0	0	16068	580	20	4		4	TLL1	4	166999245	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2726784	166999245	24155031	744	153154											
SPOCK3	50859	broad.mit.edu	37	chr4	167833911	167833911	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcctgttaaaaaaataaaGcaagcatattgagcatattt	5	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167833911	A	A	167833911	1	1	191	0	1	0	0	0	0	0	0	0	15199	986	34	4		4	SPOCK3	4	167833911	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	834666	167833911	23320365	745	153155											
DDX60	55601	broad.mit.edu	37	chr4	169214843	169214843	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atataaataagagaaaaacaTgaagtaccaaatagaggaaa	7	3	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169214843	C	C	169214843	1	2	191	0	1	0	0	0	0	0	0	0	4411	1479	51	5		5	DDX60	4	169214843	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1380932	169214843	21939433	746	153156											
DDX60	55601	broad.mit.edu	37	chr4	169232422	169232422	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attacccattcttgctgctgCctgtgcctccaacctgaact	6	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169232422	G	G	169232422	1	3	191	0	1	0	0	0	0	0	0	0	4411	754	26	4		4	DDX60	4	169232422	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	17579	169232422	21921854	747	153157											
GALNTL6	442117	broad.mit.edu	37	chr4	173301565	173301565	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctctcatatggttctGctttgaggccaggaactggt	12	8	2	1	rs7668538		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173301565	T	T	173301565	1	4	191	0	1	0	0	0	0	0	0	0	6287	1334	46	3		3	GALNTL6	4	173301565	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4069143	173301565	17852711	748	153158											
SCRG1	11341	broad.mit.edu	37	chr4	174312230	174312230	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggattttactaaaaggGttattaatttcagcaaacct	6	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174312230	A	A	174312230	1	1	191	0	1	0	0	0	0	0	0	0	14049	1276	44	4		4	SCRG1	4	174312230	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1010665	174312230	16842046	749	153159											
HPGD	3248	broad.mit.edu	37	chr4	175416704	175416704	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgtagcctcaccgctgCtgagcgtgtgaatccaacta	10	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175416704	A	A	175416704	3	1	191	1	0	0	0	0	1	0	0	0	7401	797	28	3	319	3	HPGD	4	175416704	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1104474	175416704	15737572	750	153160											
VEGFC	7424	broad.mit.edu	37	chr4	177648957	177648957	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgaggtagctcgtgctgGtgttcatgcactgcagcccc	13	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177648957	T	T	177648957	3	4	191	1	0	0	0	0	1	0	0	0	17279	1261	44	3	755	3	VEGFC	4	177648957	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2232253	177648957	13505319	751	153161											
ACSL1	2180	broad.mit.edu	37	chr4	185697593	185697593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacgtgtgagccaacacggCcccagggaaagccttcagag	13	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185697593	A	A	185697593	1	1	191	0	1	0	0	0	0	0	0	0	177	754	26	3		3	ACSL1	4	185697593	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	8048636	185697593	5456683	752	153162											
CYP4V2	285440	broad.mit.edu	37	chr4	187131579	187131579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgtttctcacatttggGgtaaatctataactaaagcg	7	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187131579	T	T	187131579	1	4	191	0	1	0	0	0	0	0	0	0	4225	1247	43	2		2	CYP4V2	4	187131579	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1433986	187131579	4022697	753	153163											
F11	2160	broad.mit.edu	37	chr4	187192858	187192858	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtactgccaggtagtctgcActtaccacccaagatgttta	8	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187192858	C	C	187192858	3	2	191	1	0	0	0	0	1	0	0	0	5380	159	6	5	157	5	F11	4	187192858	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	61279	187192858	3961418	754	153164											
MTNR1A	4543	broad.mit.edu	37	chr4	187455454	187455454	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagccatatgaggagcaCgtagcagagggagttcttgc	15	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187455454	T	T	187455454	3	4	191	1	0	0	0	0	1	0	0	0	10045	536	19	4	614	4	MTNR1A	4	187455454	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	262596	187455454	3698822	755	153165											
FAT1	2195	broad.mit.edu	37	chr4	187542468	187542468	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactggcgcgttgtcattctCatcctgcaagtgaactagaa	9	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187542468	G	G	187542468	3	3	191	1	0	0	0	0	1	0	0	0	5746	835	29	4	8566	4	FAT1	4	187542468	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	87014	187542468	3611808	756	153166											
PLEKHG4B	153478	broad.mit.edu	37	chr5	155007	155007	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgaggtcgtgagctcCctgaaggccgtgcacaaatt	13	10	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155007	G	G	155007	2	3	191	1	0	0	0	0	0	0	0	1	12167	610	22	4		4	PLEKHG4B	5	155007	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08		155007	180760253	757	153167											
SDHA	6389	broad.mit.edu	37	chr5	235330	235330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagagcagctggccacgcGcctgcctggcatttcagaga	12	14	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235330	T	T	235330	3	4	191	1	0	0	0	0	1	0	0	0	14076	1087	38	3	1170	3	SDHA	5	235330	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	80323	235330	180679930	758	153168											
EXOC3	11336	broad.mit.edu	37	chr5	453846	453846	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttcctcctgggaggcccaaGaattggaaggagaaaatgtt	13	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	453846	A	A	453846	2	1	191	1	0	0	0	0	0	0	0	1	5345	933	33	4		4	EXOC3	5	453846	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	218516	453846	180461414	759	153169											
SLC9A3	6550	broad.mit.edu	37	chr5	480128	480128	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaggtgacaggcgccctaGagcccgccggacgcgtggcc	15	16	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	480128	T	T	480128	1	4	191	0	1	0	0	0	0	0	0	0	14827	957	33	3		3	SLC9A3	5	480128	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	26282	480128	180435132	760	153170											
TRIP13	9319	broad.mit.edu	37	chr5	895012	895012	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatgaaccttttttgaccaGaaatgtgcagtctgtgtcta	9	7	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	895012	A	A	895012	3	1	191	1	0	0	0	0	1	0	0	0	16682	942	33	4	209	4	TRIP13	5	895012	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	414884	895012	180020248	761	153171											
NSUN2	54888	broad.mit.edu	37	chr5	6599858	6599858	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaaaagagtacattttcatCagctccaaagaaagcagtcc	6	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6599858	A	A	6599858	1	1	191	0	1	0	0	0	0	0	0	0	10773	841	29	3		3	NSUN2	5	6599858	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	5704846	6599858	174315402	762	153172											
ADCY2	108	broad.mit.edu	37	chr5	7698241	7698241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccaactggttctcattGctctctccagatgcccctgg	8	15	2	1	rs112411265		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7698241	T	T	7698241	1	4	191	0	1	0	0	0	0	0	0	0	294	1334	46	3		3	ADCY2	5	7698241	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1098383	7698241	173217019	763	153173											
SEMA5A	9037	broad.mit.edu	37	chr5	9042987	9042987	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaactggggatttacaaGaagccaaaaacatgaaagct	11	6	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9042987	A	A	9042987	1	1	191	0	1	0	0	0	0	0	0	0	14150	957	33	4		4	SEMA5A	5	9042987	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	1344746	9042987	171872273	764	153174											
TAS2R1	50834	broad.mit.edu	37	chr5	9630090	9630090	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccatttgtgaaaatcccaaGaagaaattgtatcactgcaa	7	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9630090	T	T	9630090	3	4	191	1	0	0	0	0	1	0	0	0	15684	942	33	3	848	3	TAS2R1	5	9630090	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	587103	9630090	171285170	765	153175											
CTNND2	1501	broad.mit.edu	37	chr5	11098738	11098738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcctgccgccccttccagCgtgtctggatttgagcactc	11	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11098738	A	A	11098738	2	1	191	1	0	0	0	0	0	0	0	1	4054	755	27	3		3	CTNND2	5	11098738	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1468648	11098738	169816522	766	153176											
DNAH5	1767	broad.mit.edu	37	chr5	13776646	13776646	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtttcgaaatttctccCccactggcgagaagcagagc	9	13	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13776646	G	G	13776646	3	3	191	1	0	0	0	0	1	0	0	0	4644	623	22	4	4699	4	DNAH5	5	13776646	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2677908	13776646	167138614	767	153177											
FBXL7	23194	broad.mit.edu	37	chr5	15928643	15928643	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacctaccagctatgggccCtcctggtgcaccatcctaaa	8	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928643	T	T	15928643	1	4	191	0	1	0	0	0	0	0	0	0	5781	696	24	4		4	FBXL7	5	15928643	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2151997	15928643	164986617	768	153178											
MARCH11	441061	broad.mit.edu	37	chr5	16091001	16091001	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtcatggtcttacctaTgcacactagatccataaaac	7	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16091001	G	G	16091001	3	3	191	1	0	0	0	0	1	0	0	0	9392	1464	51	5	333	5	MARCH11	5	16091001	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	162358	16091001	164824259	769	153179											
FAM134B	54463	broad.mit.edu	37	chr5	16477873	16477873	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtcagacacagataactCtttggcagcaaccgtgaggc	11	10	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16477873	G	G	16477873	3	3	191	1	0	0	0	0	1	0	0	0	5492	922	32	4	603	4	FAM134B	5	16477873	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	386872	16477873	164437387	770	153180											
FAM134B	54463	broad.mit.edu	37	chr5	16565879	16565879	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagttccctacctttcacTgaggcttctccacaactgtg	7	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16565879	A	A	16565879	3	1	191	1	0	0	0	0	1	0	0	0	5492	1580	55	5	1109	5	FAM134B	5	16565879	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	88006	16565879	164349381	771	153181											
MYO10	4651	broad.mit.edu	37	chr5	16902485	16902485	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggtccttgcgggcttcaCgagatcgattcctgactact	10	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16902485	T	T	16902485	1	4	191	0	1	0	0	0	0	0	0	0	10156	551	19	4		4	MYO10	5	16902485	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	336606	16902485	164012775	772	153182											
BASP1	10409	broad.mit.edu	37	chr5	17275961	17275961	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagagcccaagccggtGgaggccccggcagctaattc	14	13	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17275961	T	T	17275961	2	4	191	1	0	0	0	0	0	0	0	1	1322	1335	47	2		2	BASP1	5	17275961	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	373476	17275961	163639299	773	153183											
CDH18	1016	broad.mit.edu	37	chr5	19473826	19473826	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gataaaaagtaccacaattgCtgaggaagaatggaaaaagg	11	4	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19473826	G	G	19473826	1	3	191	0	1	0	0	0	0	0	0	0	3133	811	28	4		4	CDH18	5	19473826	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2197865	19473826	161441434	774	153184											
CDH18	1016	broad.mit.edu	37	chr5	19839113	19839113	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgtaagataactttccaGttcacagttttccttccttt	4	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19839113	T	T	19839113	1	4	191	1	0	0	0	0	0	0	0	0	3133	1044	36	3		3	CDH18	5	19839113	Translation_Start_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	365287	19839113	161076147	775	153185											
CDH12	1010	broad.mit.edu	37	chr5	21883081	21883081	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctatagccaaggaaggcTtccagaagattagcaaaggt	11	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883081	A	A	21883081	1	1	191	0	1	0	0	0	0	0	0	0	3128	1624	56	5		5	CDH12	5	21883081	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2043968	21883081	159032179	776	153186											
PRDM9	56979	broad.mit.edu	37	chr5	23509102	23509102	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agactcagggcccttctcacActcagaattggagcagggcc	11	13	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23509102	T	T	23509102	1	4	191	0	1	0	0	0	0	0	0	0	12569	174	6	5		5	PRDM9	5	23509102	5'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	1626021	23509102	157406158	777	153187											
CDH10	1008	broad.mit.edu	37	chr5	24505268	24505268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgccactgagatagttcaCggtcaagaggttttgatgta	11	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24505268	A	A	24505268	3	1	191	1	0	0	0	0	1	0	0	0	3126	536	19	3	1040	3	CDH10	5	24505268	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	996166	24505268	156409992	778	153188											
CDH6	1004	broad.mit.edu	37	chr5	31302431	31302431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcttcttaaacaccataCagagtgaacccatttacttt	5	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31302431	A	A	31302431	1	1	191	0	1	0	0	0	0	0	0	0	3144	493	17	3		3	CDH6	5	31302431	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	6797163	31302431	149612829	779	153189											
RNASEN	29102	broad.mit.edu	37	chr5	31429561	31429561	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatatataacaaaaaaaatCaaatgattccatagaaatac	2	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31429561	T	T	31429561	1	4	191	0	1	0	0	0	0	0	0	0	13528	841	29	4		4	RNASEN	5	31429561	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	127130	31429561	149485699	780	153190											
MTMR12	54545	broad.mit.edu	37	chr5	32248925	32248925	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgccgtcatcctgttcTttgggcagtgctgacatttt	9	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32248925	A	A	32248925	3	1	191	1	0	0	0	0	1	0	0	0	10035	1606	56	5	1426	5	MTMR12	5	32248925	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	819364	32248925	148666335	781	153191											
ADAMTS12	81792	broad.mit.edu	37	chr5	33643550	33643550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgacaaaagcccttcacgGagcaccacagtgtctggcag	11	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33643550	T	T	33643550	3	4	191	1	0	0	0	0	1	0	0	0	257	1174	41	3	3339	3	ADAMTS12	5	33643550	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1394625	33643550	147271710	782	153192											
ADAMTS12	81792	broad.mit.edu	37	chr5	33649028	33649028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaccttggacttcaagcCtttctttttaggtatgtcat	7	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33649028	A	A	33649028	3	1	191	1	0	0	0	0	1	0	0	0	257	681	24	2	3470	2	ADAMTS12	5	33649028	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5478	33649028	147266232	783	153193											
ADAMTS12	81792	broad.mit.edu	37	chr5	33649046	33649046	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctttctttttaggtatgtCatcaagacagaacccccagc	7	12	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33649046	T	T	33649046	3	4	191	1	0	0	0	0	1	0	0	0	257	826	29	4	3488	4	ADAMTS12	5	33649046	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	18	33649046	147266214	784	153194											
ADAMTS12	81792	broad.mit.edu	37	chr5	33751520	33751520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacaataccctttaatccaCaggttggctccttggtttct	6	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33751520	T	T	33751520	3	4	191	1	0	0	0	0	1	0	0	0	257	478	17	4	4249	4	ADAMTS12	5	33751520	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	102474	33751520	147163740	785	153195											
SPEF2	79925	broad.mit.edu	37	chr5	35659183	35659183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtcccagcaggagcgcagGattgccgtgcagctcatgca	13	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35659183	T	T	35659183	3	4	191	1	0	0	0	0	1	0	0	0	15153	1165	41	3	1071	3	SPEF2	5	35659183	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1907663	35659183	145256077	786	153196											
SPEF2	79925	broad.mit.edu	37	chr5	35691205	35691205	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccaccctccaacaattgcAtactgggccatattcttcac	4	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35691205	G	G	35691205	3	3	191	1	0	0	0	0	1	0	0	0	15153	217	8	5	1654	5	SPEF2	5	35691205	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	32022	35691205	145224055	787	153197											
IL7R	3575	broad.mit.edu	37	chr5	35856993	35856993	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctagatctaagcttctctgtCttcctccctccctcccttcc	3	19	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35856993	A	A	35856993	1	1	191	0	1	0	0	0	0	0	0	0	7775	928	32	3		3	IL7R	5	35856993	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	165788	35856993	145058267	788	153198											
IL7R	3575	broad.mit.edu	37	chr5	35873708	35873708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttctggagtgaatggagtCcaagttattacttcagaact	10	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35873708	A	A	35873708	3	1	191	1	0	0	0	0	1	0	0	0	7775	855	30	3	682	3	IL7R	5	35873708	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	16715	35873708	145041552	789	153199											
UGT3A1	133688	broad.mit.edu	37	chr5	35954247	35954247	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgtgctggggtgGggagaaccttcaaaggacca	19	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35954247	T	T	35954247	1	4	191	0	1	0	0	0	0	0	0	0	17089	1247	43	2		2	UGT3A1	5	35954247	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	80539	35954247	144961013	790	153200											
UGT3A1	133688	broad.mit.edu	37	chr5	35991185	35991185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcaatcgccgttcgctGgagccctggcagtgcgggga	15	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35991185	T	T	35991185	1	4	191	0	1	0	0	0	0	0	0	0	17089	1363	47	2		2	UGT3A1	5	35991185	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	36938	35991185	144924075	791	153201											
RANBP3L	202151	broad.mit.edu	37	chr5	36270162	36270162	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgttggtgcaaaagttatTgcagttttggcaattaaaag	10	3	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36270162	A	A	36270162	1	1	191	0	1	0	0	0	0	0	0	0	13138	1827	63	5		5	RANBP3L	5	36270162	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	278977	36270162	144645098	792	153202											
NIPBL	25836	broad.mit.edu	37	chr5	37064563	37064563	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggattaaaagcaataaaaAcaataatttcactaaaattc	4	5	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37064563	G	G	37064563	1	3	191	0	1	0	0	0	0	0	0	0	10523	58	2	5		5	NIPBL	5	37064563	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	794401	37064563	143850697	793	153203											
EGFLAM	133584	broad.mit.edu	37	chr5	38425037	38425037	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggactggcacacatggagGattggctttgtaattcccat	11	8	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38425037	T	T	38425037	1	4	191	0	1	0	0	0	0	0	0	0	5006	1189	41	3		3	EGFLAM	5	38425037	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1360474	38425037	142490223	794	153204											
FYB	2533	broad.mit.edu	37	chr5	39119135	39119135	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggactctaatttcaccatCatactaaaaaaaaaagaaca	3	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39119135	A	A	39119135	3	1	191	1	0	0	0	0	1	0	0	0	6184	826	29	3	263	3	FYB	5	39119135	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	694098	39119135	141796125	795	153205											
C9	735	broad.mit.edu	37	chr5	39306837	39306837	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcaaatgcatattttctgGttccacctcttatgagtgaa	7	8	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39306837	C	C	39306837	3	2	191	1	0	0	0	0	1	0	0	0	2469	1261	44	4	393	4	C9	5	39306837	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	187702	39306837	141608423	796	153206											
DAB2	1601	broad.mit.edu	37	chr5	39393458	39393458	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattttacaccatcgcctttGaaccttgctaagagatattc	5	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39393458	A	A	39393458	2	1	191	1	0	0	0	0	0	0	0	1	4251	1281	45	4		4	DAB2	5	39393458	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	86621	39393458	141521802	797	153207											
RPL37	6167	broad.mit.edu	37	chr5	40834695	40834695	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcgacgctttccaaacgatGacgttcccttcgtctgcaca	8	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40834695	A	A	40834695	3	1	191	1	0	0	0	0	1	0	0	0	13700	1294	45	4	288	4	RPL37	5	40834695	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1441237	40834695	140080565	798	153208											
HEATR7B2	133558	broad.mit.edu	37	chr5	40998295	40998295	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atagcaaataagtggaggagGagagtcagagcccagcaaga	14	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40998295	A	A	40998295	1	1	191	0	1	0	0	0	0	0	0	0	7102	1189	41	4		4	HEATR7B2	5	40998295	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	163600	40998295	139916965	799	153209											
HEATR7B2	133558	broad.mit.edu	37	chr5	41032890	41032890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccaccgaatagggctagCtaaggaatccaggggctcgt	12	10	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41032890	A	A	41032890	3	1	191	1	0	0	0	0	1	0	0	0	7102	797	28	3	2438	3	HEATR7B2	5	41032890	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	34595	41032890	139882370	800	153210											
HEATR7B2	133558	broad.mit.edu	37	chr5	41049430	41049430	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgactccttggcactgtgctGcttcttctcctctgccataa	7	15	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41049430	T	T	41049430	3	4	191	1	0	0	0	0	1	0	0	0	7102	1328	46	3	3420	3	HEATR7B2	5	41049430	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	16540	41049430	139865830	801	153211											
GHR	2690	broad.mit.edu	37	chr5	42465501	42465501	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagggattgaagaggtttCtacttttgcccagtccttat	9	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42465501	A	A	42465501	1	1	191	0	1	0	0	0	0	0	0	0	6435	928	32	3		3	GHR	5	42465501	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1416071	42465501	138449759	802	153212											
C5orf39	389289	broad.mit.edu	37	chr5	43040126	43040126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcccaagcccgcttcacaCagccaagaaaatgttgctcc	6	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43040126	A	A	43040126	3	1	191	1	0	0	0	0	1	0	0	0	2320	478	17	3	562	3	C5orf39	5	43040126	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	574625	43040126	137875134	803	153213											
MRPS30	10884	broad.mit.edu	37	chr5	44809482	44809482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacctgcgctggacctcGcggcgctgcgtgcggtcgcc	15	16	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44809482	T	T	44809482	3	4	191	1	0	0	0	0	1	0	0	0	9934	1087	38	3	420	3	MRPS30	5	44809482	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1769356	44809482	136105778	804	153214											
ISL1	3670	broad.mit.edu	37	chr5	50680542	50680542	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttagggatgggaaaaccTactgtaaaagagattatatc	10	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50680542	A	A	50680542	3	1	191	1	0	0	0	0	1	0	0	0	7926	1522	53	5	202	5	ISL1	5	50680542	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	5871060	50680542	130234718	805	153215											
PDE4D	5144	broad.mit.edu	37	chr5	59284456	59284456	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagggggaagctgaatattgCgacatgaaagtctccggaca	14	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59284456	G	G	59284456	3	3	191	1	0	0	0	0	1	0	0	0	11736	768	27	4	2685	4	PDE4D	5	59284456	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	8603914	59284456	121630804	806	153216											
RNF180	285671	broad.mit.edu	37	chr5	63509680	63509680	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgaaataataatgaccctgGaagattaacagaagcactct	7	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63509680	A	A	63509680	3	1	191	1	0	0	0	0	1	0	0	0	13575	1174	41	4	537	4	RNF180	5	63509680	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4225224	63509680	117405580	807	153217											
SFRS12IP1	285672	broad.mit.edu	37	chr5	64064294	64064294	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accctcccttgcgctcccttCggagctcggacgcagaggcc	11	18	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64064294	T	T	64064294	1	4	191	0	1	0	0	0	0	0	0	0	14281	899	31	4		4	SFRS12IP1	5	64064294	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	554614	64064294	116850966	808	153218											
ADAMTS6	11174	broad.mit.edu	37	chr5	64747170	64747170	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaatacattctttctcaGtagtgaaaaataaattacca	5	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64747170	A	A	64747170	1	1	191	0	1	0	0	0	0	0	0	0	270	1044	36	4		4	ADAMTS6	5	64747170	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	682876	64747170	116168090	809	153219											
SGTB	54557	broad.mit.edu	37	chr5	64968033	64968033	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcctggcaagtggaagGgttggggaagtgtaataagc	18	4	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64968033	A	A	64968033	1	1	191	0	1	0	0	0	0	0	0	0	14339	1247	43	4		4	SGTB	5	64968033	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	220863	64968033	115947227	810	153220											
MAST4	375449	broad.mit.edu	37	chr5	66437819	66437819	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgtagaatgaaaaagtatGattttcatgtctgtatttct	8	3	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66437819	A	A	66437819	1	1	191	0	1	0	0	0	0	0	0	0	9419	1305	45	4		4	MAST4	5	66437819	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1469786	66437819	114477441	811	153221											
MCCC2	64087	broad.mit.edu	37	chr5	70944875	70944875	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttggtggaattgcgttccGcatattaatcccatcaccca	7	11	1	0	rs143245525	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70944875	T	T	70944875	1	4	191	0	1	0	0	0	0	0	0	0	9468	1102	38	3		3	MCCC2	5	70944875	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4507056	70944875	109970385	812	153222											
TNPO1	3842	broad.mit.edu	37	chr5	72171445	72171445	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttcttgtgcaacagaatCtctttgcattagctggtgat	8	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72171445	G	G	72171445	3	3	191	1	0	0	0	0	1	0	0	0	16458	913	32	4	712	4	TNPO1	5	72171445	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1226570	72171445	108743815	813	153223											
UTP15	84135	broad.mit.edu	37	chr5	72872701	72872701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattttaatgtttgtattttGttttcagaaaatagaaattt	6	1	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72872701	T	T	72872701	1	4	191	0	1	0	0	0	0	0	0	0	17224	1392	48	3		3	UTP15	5	72872701	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	701256	72872701	108042559	814	153224											
PDE8B	8622	broad.mit.edu	37	chr5	76627258	76627258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgaagaggcgtcagtccttCctcttctccacgcaggcttc	9	14	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76627258	A	A	76627258	3	1	191	1	0	0	0	0	1	0	0	0	11748	855	30	3	700	3	PDE8B	5	76627258	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3754557	76627258	104288002	815	153225											
FAM151B	167555	broad.mit.edu	37	chr5	79797565	79797565	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgattttaaaaattttacCctataaaaaacaatatcact	2	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79797565	T	T	79797565	1	4	191	0	1	0	0	0	0	0	0	0	5505	638	22	4		4	FAM151B	5	79797565	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3170307	79797565	101117695	816	153226											
VCAN	1462	broad.mit.edu	37	chr5	82837667	82837667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaagcaatcaagatgtttCccaccattaaaacacctgag	7	10	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82837667	A	A	82837667	3	1	191	1	0	0	0	0	1	0	0	0	17265	855	30	3	8871	3	VCAN	5	82837667	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3040102	82837667	98077593	817	153227											
VCAN	1462	broad.mit.edu	37	chr5	82850754	82850754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagtagtacaaatatctGtgtggtttcctatcccttag	8	7	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82850754	T	T	82850754	1	4	191	0	1	0	0	0	0	0	0	0	17265	1392	48	3		3	VCAN	5	82850754	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	13087	82850754	98064506	818	153228											
HAPLN1	1404	broad.mit.edu	37	chr5	82940520	82940520	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggagttgttagaagcCccaaaactaacaactctgag	9	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82940520	T	T	82940520	1	4	191	0	1	0	0	0	0	0	0	0	7020	638	22	4		4	HAPLN1	5	82940520	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	89766	82940520	97974740	819	153229											
RASA1	5921	broad.mit.edu	37	chr5	86648978	86648978	+	Frame_Shift_Del	DEL	G	-	-													atttttattttaacagcattGgggacatcatagatcactat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	86648978	-	-	86648978	7	5	191	1	0	1	0	1	0	0	0	0	13168	1348	47	0	1304	0	RASA1	5	86648978	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	3708458	86648978	94266282	820	153230											
C5orf36	285600	broad.mit.edu	37	chr5	93855925	93855926	+	Intron	DNP	CC	AA	AA													attaaaagacttaagttaaaCcaaacaaaaattttaaatgt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	93855926	AA	AA	93855925	1	1	191	0	1	0	0	0	0	0	0	0	2318	522	18	3		3	C5orf36	5	93855925	Intron	DNP	CC	TCGA-64-5781-01A-01D-1625-08	7206947	93855925	87059335	821	153231											
ERAP1	51752	broad.mit.edu	37	chr5	96117578	96117578	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctatagaaaggaacacactCggtgagaatctgaggtgcag	13	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96117578	A	A	96117578	1	1	191	0	1	0	0	0	0	0	0	0	5245	899	31	3		3	ERAP1	5	96117578	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2261653	96117578	84797682	822	153232											
MAN2A1	4124	broad.mit.edu	37	chr5	109178149	109178149	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatagattttatactgaccTaaatgggtaccaggtaattt	7	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109178149	G	G	109178149	3	3	191	1	0	0	0	0	1	0	0	0	9306	1522	53	5	2753	5	MAN2A1	5	109178149	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	13060571	109178149	71737111	823	153233											
SEMA6A	57556	broad.mit.edu	37	chr5	115818122	115818122	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagtttaaaatagccatAtgaatatttgcacatacctg	5	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115818122	G	G	115818122	1	3	191	0	1	0	0	0	0	0	0	0	14152	464	16	5		5	SEMA6A	5	115818122	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	6639973	115818122	65097138	824	153234											
SRFBP1	153443	broad.mit.edu	37	chr5	121356095	121356095	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgagtcccagaagacacCtgctgacccaaaactgaaaa	7	13	0	5	rs78373051	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121356095	T	T	121356095	3	4	191	1	0	0	0	0	1	0	0	0	15262	681	24	4	687	4	SRFBP1	5	121356095	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5537973	121356095	59559165	825	153235											
SNX24	28966	broad.mit.edu	37	chr5	122337653	122337653	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaaactgtcccaccagccTgtgctgctgttcctcaggga	10	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122337653	C	C	122337653	2	2	191	1	0	0	0	0	0	0	0	1	15009	1567	55	5		5	SNX24	5	122337653	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	981558	122337653	58577607	826	153236											
ALDH7A1	501	broad.mit.edu	37	chr5	125929166	125929166	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaagggaatagaccaaaCggggaagaaaaacaagagag	13	4	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125929166	A	A	125929166	1	1	191	0	1	0	0	0	0	0	0	0	504	551	19	3		3	ALDH7A1	5	125929166	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3591513	125929166	54986094	827	153237											
FBN2	2201	broad.mit.edu	37	chr5	127673811	127673811	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttacgttcacattcgtcaAtgtctgaaaggtaaaaacgt	9	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127673811	T	T	127673811	3	4	191	1	0	0	0	0	1	0	0	0	5760	101	4	5	5418	5	FBN2	5	127673811	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1744645	127673811	53241449	828	153238											
FBN2	2201	broad.mit.edu	37	chr5	127674798	127674798	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaaaattgaatgagataGacttggccttccaagcgaag	9	6	0	3	rs145050744	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127674798	T	T	127674798	1	4	191	0	1	0	0	0	0	0	0	0	5760	957	33	3		3	FBN2	5	127674798	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	987	127674798	53240462	829	153239											
RAD50	10111	broad.mit.edu	37	chr5	131931247	131931247	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcattggtgatataaTttattttcttaaaatagcca	4	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131931247	A	A	131931247	1	1	191	0	1	0	0	0	0	0	0	0	13092	1508	52	5		5	RAD50	5	131931247	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	4256449	131931247	48984013	830	153240											
ANKHD1	54882	broad.mit.edu	37	chr5	139851881	139851881	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagatccggccaagcatcagGtgagggtggcctttgatgct	14	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139851881	C	C	139851881	1	2	191	0	1	0	0	0	0	0	0	0	628	1261	44	4		4	ANKHD1	5	139851881	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	7920634	139851881	41063379	831	153241											
PCDHA3	56145	broad.mit.edu	37	chr5	140181091	140181091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcggagcgcggagtgcagCatccacctggaggtgatcgt	18	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140181091	A	A	140181091	3	1	191	1	0	0	0	0	1	0	0	0	11619	709	25	3	311	3	PCDHA3	5	140181091	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	329210	140181091	40734169	832	153242											
PCDHA10	56139	broad.mit.edu	37	chr5	140237058	140237058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctgccacatcttcacGgtgtctgcgtgggacgcgga	14	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140237058	T	T	140237058	2	4	191	1	0	0	0	0	0	0	0	1	11614	1103	39	1		1	PCDHA10	5	140237058	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	55967	140237058	40678202	833	153243											
PCDHA12	56137	broad.mit.edu	37	chr5	140256592	140256592	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctacgtgtcggtgcacgCggagagcggcaaggtgtacg	18	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140256592	T	T	140256592	3	4	191	1	0	0	0	0	1	0	0	0	11616	768	27	4	1537	4	PCDHA12	5	140256592	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	19534	140256592	40658668	834	153244											
PCDHA13	56136	broad.mit.edu	37	chr5	140262359	140262359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagtaaactcggcattgaCctaccgactggatcccaacg	10	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140262359	A	A	140262359	3	1	191	1	0	0	0	0	1	0	0	0	11617	507	18	3	508	3	PCDHA13	5	140262359	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5767	140262359	40652901	835	153245											
PCDHAC1	56135	broad.mit.edu	37	chr5	140308490	140308490	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagactttgaagatgtctgGgaaccaggagggcagctttc	13	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140308490	C	C	140308490	3	2	191	1	0	0	0	0	1	0	0	0	11626	1241	43	4	2015	4	PCDHAC1	5	140308490	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	46131	140308490	40606770	836	153246											
PCDHAC2	56134	broad.mit.edu	37	chr5	140348144	140348144	+	Frame_Shift_Del	DEL	C	-	-													cgagatggtgcctcgaactgCccctgctggctacctggtca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	140348144	-	-	140348144	7	5	191	1	0	1	0	1	0	0	0	0	11627	739	26	0	1795	0	PCDHAC2	5	140348144	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	39654	140348144	40567116	837	153247											
PCDHB2	56133	broad.mit.edu	37	chr5	140476327	140476327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcaaggacaatggcgaGcctccgcgctcggccaccgc	13	16	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140476327	T	T	140476327	3	4	191	1	0	0	0	0	1	0	0	0	11636	962	34	3	1955	3	PCDHB2	5	140476327	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	128183	140476327	40438933	838	153248											
PCDHB4	56131	broad.mit.edu	37	chr5	140502416	140502416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgggagtgtttcttatgGcttattccaagcatcagatg	10	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140502416	T	T	140502416	3	4	191	1	0	0	0	0	1	0	0	0	11638	1203	42	3	838	3	PCDHB4	5	140502416	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	26089	140502416	40412844	839	153249											
PCDHB7	56129	broad.mit.edu	37	chr5	140553578	140553578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtgtgctccatccaggacGatgtccccttcatcctgaag	9	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140553578	T	T	140553578	3	4	191	1	0	0	0	0	1	0	0	0	11641	1058	37	3	1164	3	PCDHB7	5	140553578	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	51162	140553578	40361682	840	153250											
PCDHB8	56128	broad.mit.edu	37	chr5	140558593	140558593	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcgaggcgagagatgctggAggcttttctggaaaatgcac	14	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140558593	T	T	140558593	2	4	191	1	0	0	0	0	0	0	0	1	11642	291	11	5		5	PCDHB8	5	140558593	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	5015	140558593	40356667	841	153251											
PCDHB8	56128	broad.mit.edu	37	chr5	140559020	140559020	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgagaacaacagccccgccCtgcacatcggcagcgtcagc	11	17	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140559020	G	G	140559020	3	3	191	1	0	0	0	0	1	0	0	0	11642	680	24	4	1407	4	PCDHB8	5	140559020	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	427	140559020	40356240	842	153252											
PCDHB8	56128	broad.mit.edu	37	chr5	140559032	140559032	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccgccctgcacatcggcAgcgtcagcgccacagacaga	11	18	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140559032	C	C	140559032	3	2	191	1	0	0	0	0	1	0	0	0	11642	188	7	5	1419	5	PCDHB8	5	140559032	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	12	140559032	40356228	843	153253											
TAF7	6879	broad.mit.edu	37	chr5	140698604	140698604	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agctcctcttgcaaagagctGagttgctccttttctcggtc	9	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140698604	A	A	140698604	2	1	191	1	0	0	0	0	0	0	0	1	15651	1277	45	4		4	TAF7	5	140698604	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	139572	140698604	40216656	844	153254											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725056	140725056	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatagcaacaacaacgccCgcatcacttatgcattgacc	6	14	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140725056	G	G	140725056	3	3	191	1	0	0	0	0	1	0	0	0	11649	652	23	4	1458	4	PCDHGA3	5	140725056	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	26452	140725056	40190204	845	153255											
PCDHGB4	8641	broad.mit.edu	37	chr5	140769611	140769611	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgacgctcctccagccccgcCtcctggagctgcttccagcc	9	21	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140769611	T	T	140769611	2	4	191	1	0	0	0	0	0	0	0	1	11659	668	24	4		4	PCDHGB4	5	140769611	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	44555	140769611	40145649	846	153256											
PCDHGA8	9708	broad.mit.edu	37	chr5	140772969	140772969	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaacccagagctggtgctgGagcgcgccctggacagggag	16	11	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140772969	A	A	140772969	3	1	191	1	0	0	0	0	1	0	0	0	11654	1175	41	4	591	4	PCDHGA8	5	140772969	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3358	140772969	40142291	847	153257											
PCDHGB5	56101	broad.mit.edu	37	chr5	140780026	140780026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacaagacatactttgtGgtgattcatctggggcctta	11	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140780026	T	T	140780026	3	4	191	1	0	0	0	0	1	0	0	0	11660	1348	47	2	2334	2	PCDHGB5	5	140780026	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	7057	140780026	40135234	848	153258											
PCDH1	5097	broad.mit.edu	37	chr5	141244261	141244261	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcagccggctcaggctcCagagagtaaaccagctcagc	11	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141244261	A	A	141244261	2	1	191	1	0	0	0	0	0	0	0	1	11600	581	21	2		2	PCDH1	5	141244261	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	464235	141244261	39670999	849	153259											
PRELID2	153768	broad.mit.edu	37	chr5	145199614	145199614	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttttacacaaaaaaaaaTtaaagaaatgtgttcttttc	3	4	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145199614	A	A	145199614	1	1	191	0	1	0	0	0	0	0	0	0	12578	1508	52	5		5	PRELID2	5	145199614	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	3955353	145199614	35715646	850	153260											
SH3RF2	153769	broad.mit.edu	37	chr5	145383585	145383585	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcttttactgcctgaaaatGagagtaaatgctgaccatga	9	7	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145383585	T	T	145383585	1	4	191	0	1	0	0	0	0	0	0	0	14372	1305	45	3		3	SH3RF2	5	145383585	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	183971	145383585	35531675	851	153261											
STK32A	202374	broad.mit.edu	37	chr5	146658824	146658824	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattaggtctgcattgtacaGaagaatgataccaagaagat	9	6	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146658824	A	A	146658824	2	1	191	1	0	0	0	0	0	0	0	1	15415	933	33	4		4	STK32A	5	146658824	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1275239	146658824	34256436	852	153262											
ABLIM3	22885	broad.mit.edu	37	chr5	148586668	148586668	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaagtgccagacctgcagCgtcatcctcaccggggagta	11	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148586668	A	A	148586668	3	1	191	1	0	0	0	0	1	0	0	0	96	767	27	3	564	3	ABLIM3	5	148586668	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1927844	148586668	32328592	853	153263											
AFAP1L1	134265	broad.mit.edu	37	chr5	148679017	148679017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggggccgaactcccgGgcacagagctgtgactgtgc	18	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148679017	T	T	148679017	1	4	191	0	1	0	0	0	0	0	0	0	354	1247	43	2		2	AFAP1L1	5	148679017	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	92349	148679017	32236243	854	153264											
SLC6A7	6534	broad.mit.edu	37	chr5	149576274	149576274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgaccaccccgctcccGgcaggcgccttcctcgtgcc	10	20	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149576274	T	T	149576274	1	4	191	0	1	0	0	0	0	0	0	0	14803	1131	39	1		1	SLC6A7	5	149576274	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	897257	149576274	31338986	855	153265											
TCOF1	6949	broad.mit.edu	37	chr5	149751720	149751720	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccccagccaagagggccaAgaagccagaagaggagtcag	14	12	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149751720	G	G	149751720	3	3	191	1	0	0	0	0	1	0	0	0	15830	72	3	5	817	5	TCOF1	5	149751720	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	175446	149751720	31163540	856	153266											
FAT2	2196	broad.mit.edu	37	chr5	150922455	150922455	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacctttatgacccctgtgtCtgggtctagggagaagacac	11	11	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150922455	A	A	150922455	3	1	191	1	0	0	0	0	1	0	0	0	5747	913	32	3	4876	3	FAT2	5	150922455	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1170735	150922455	29992805	857	153267											
FAT2	2196	broad.mit.edu	37	chr5	150932774	150932774	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagagtccgggtctgccctCtacgctgatgacccccacca	10	16	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150932774	A	A	150932774	4	1	191	1	0	0	0	0	0	1	0	0	5747	922	32	3	9005	3	FAT2	5	150932774	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	10319	150932774	29982486	858	153268											
GRIA1	2890	broad.mit.edu	37	chr5	153078460	153078460	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctcaagaagaacgccAatcagtttgagggcaatgac	11	8	2	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153078460	C	C	153078460	3	2	191	1	0	0	0	0	1	0	0	0	6833	130	5	5	1317	5	GRIA1	5	153078460	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2145686	153078460	27836800	859	153269											
FAM114A2	10827	broad.mit.edu	37	chr5	153390742	153390742	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatttataatcttatgctcTttatccactacatttttaca	2	8	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153390742	A	A	153390742	1	1	191	0	1	0	0	0	0	0	0	0	5450	1624	56	5		5	FAM114A2	5	153390742	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	312282	153390742	27524518	860	153270											
LARP1	23367	broad.mit.edu	37	chr5	154182999	154182999	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcagacacctgagatcctGacatgggtgagaggatctag	13	8	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154182999	T	T	154182999	1	4	191	0	1	0	0	0	0	0	0	0	8700	1305	45	3		3	LARP1	5	154182999	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	792257	154182999	26732261	861	153271											
TIMD4	91937	broad.mit.edu	37	chr5	156381792	156381792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaatgcgaaatttaGgtcatgcagtactgaaatct	9	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156381792	T	T	156381792	1	4	191	0	1	0	0	0	0	0	0	0	16026	1015	35	2		2	TIMD4	5	156381792	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2198793	156381792	24533468	862	153272											
HAVCR1	26762	broad.mit.edu	37	chr5	156479247	156479247	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggatcacaaaccctgaggaGaccctgattgaaacccaggt	10	11	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156479247	T	T	156479247	1	4	191	0	1	0	0	0	0	0	0	0	7039	957	33	3		3	HAVCR1	5	156479247	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	97455	156479247	24436013	863	153273											
ITK	3702	broad.mit.edu	37	chr5	156649790	156649790	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaccagaggaaggcagactGtctccccagacaccccgatg	10	15	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156649790	C	C	156649790	1	2	191	0	1	0	0	0	0	0	0	0	7979	1392	48	4		4	ITK	5	156649790	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	170543	156649790	24265470	864	153274											
EBF1	1879	broad.mit.edu	37	chr5	158267169	158267169	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcggtttctgacacgggaGggaaaaaagaggtaagtcac	13	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158267169	A	A	158267169	1	1	191	0	1	0	0	0	0	0	0	0	4920	1015	35	4		4	EBF1	5	158267169	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1617379	158267169	22648091	865	153275											
ADRA1B	147	broad.mit.edu	37	chr5	159398780	159398780	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggaaaggcctggcggcagGaacgctgcaggttgacaatg	18	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159398780	A	A	159398780	1	1	191	0	1	0	0	0	0	0	0	0	335	1189	41	4		4	ADRA1B	5	159398780	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1131611	159398780	21516480	866	153276											
MAT2B	27430	broad.mit.edu	37	chr5	162939126	162939126	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagttggctgtggtttcaGaagagcaagaccaaaatttg	12	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162939126	T	T	162939126	3	4	191	1	0	0	0	0	1	0	0	0	9423	942	33	3	222	3	MAT2B	5	162939126	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3540346	162939126	17976134	867	153277											
ODZ2	57451	broad.mit.edu	37	chr5	167182307	167182307	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggataccaagggagagatGggagacttgacggtgaaact	16	6	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167182307	T	T	167182307	1	4	191	0	1	0	0	0	0	0	0	0	10930	1363	47	2		2	ODZ2	5	167182307	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4243181	167182307	13732953	868	153278											
CCDC99	54908	broad.mit.edu	37	chr5	169028523	169028523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcacaaaaatctgcccGtggatatgcagctgaagaag	9	11	2	2	rs143182474		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169028523	T	T	169028523	3	4	191	1	0	0	0	0	1	0	0	0	2904	1145	40	3	1602	3	CCDC99	5	169028523	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1846216	169028523	11886737	869	153279											
CCDC99	54908	broad.mit.edu	37	chr5	169028583	169028583	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcataggagttcccgctgacGctgaggccttaagtgaaaga	12	9	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169028583	C	C	169028583	3	2	191	1	0	0	0	0	1	0	0	0	2904	1087	38	4	1662	4	CCDC99	5	169028583	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	60	169028583	11886677	870	153280											
DOCK2	1794	broad.mit.edu	37	chr5	169101515	169101515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctttcttccctctctccCcagaagcttgttttcatttt	3	15	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169101515	A	A	169101515	1	1	191	0	1	0	0	0	0	0	0	0	4727	638	22	2		2	DOCK2	5	169101515	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	72932	169101515	11813745	871	153281											
RANBP17	64901	broad.mit.edu	37	chr5	170626798	170626798	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgggtttgtttccaaatatGaggaatgacagttttgtttt	11	3	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170626798	T	T	170626798	1	4	191	0	1	0	0	0	0	0	0	0	13135	1305	45	3		3	RANBP17	5	170626798	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1525283	170626798	10288462	872	153282											
NOP16	51491	broad.mit.edu	37	chr5	175815678	175815678	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttgtagcactaccgtgCtgagcactacgactcccagg	9	14	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175815678	A	A	175815678	1	1	191	0	1	0	0	0	0	0	0	0	10632	812	28	3		3	NOP16	5	175815678	5'Flank	SNP	C	TCGA-64-5781-01A-01D-1625-08	5188880	175815678	5099582	873	153283											
COL23A1	91522	broad.mit.edu	37	chr5	177676032	177676032	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtcagggtcacgcccTggcctccccacagcacgggg	15	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177676032	C	C	177676032	1	2	191	0	1	0	0	0	0	0	0	0	3714	1595	55	5		5	COL23A1	5	177676032	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1860354	177676032	3239228	874	153284											
CLK4	57396	broad.mit.edu	37	chr5	178030931	178030931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttatggtgaaaatacttgcGttttctacagaaaaaaaaaa	7	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178030931	A	A	178030931	3	1	191	1	0	0	0	0	1	0	0	0	3571	1145	40	4	234	4	CLK4	5	178030931	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	354899	178030931	2884329	875	153285											
WRNIP1	56897	broad.mit.edu	37	chr6	2770673	2770673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggccagaaagggccggGcgtcagtgaggagagggtgg	23	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2770673	T	T	2770673	1	4	191	0	1	0	0	0	0	0	0	0	17530	1218	42	3		3	WRNIP1	6	2770673	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08		2770673	168344394	876	153286											
RIPK1	8737	broad.mit.edu	37	chr6	3105950	3105950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggaggaaaggagacgcaGggtctcccatgacccttttg	14	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3105950	T	T	3105950	3	4	191	1	0	0	0	0	1	0	0	0	13491	1000	35	2	1271	2	RIPK1	6	3105950	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	335277	3105950	168009117	877	153287											
F13A1	2162	broad.mit.edu	37	chr6	6167910	6167910	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgagacagggtctgctttaCttttctccaagtttccctac	7	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6167910	G	G	6167910	1	3	191	0	1	0	0	0	0	0	0	0	5383	580	20	4		4	F13A1	6	6167910	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3061960	6167910	164947157	878	153288											
F13A1	2162	broad.mit.edu	37	chr6	6305623	6305623	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagagatcccttctggggtCatatggacgactgaagtcaa	12	8	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6305623	A	A	6305623	3	1	191	1	0	0	0	0	1	0	0	0	5383	826	29	3	1970	3	F13A1	6	6305623	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	137713	6305623	164809444	879	153289											
HIVEP1	3096	broad.mit.edu	37	chr6	12161902	12161902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatcaccgattgcttttctGgggtacacacggacccaatg	11	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12161902	A	A	12161902	3	1	191	1	0	0	0	0	1	0	0	0	7253	1348	47	4	6744	4	HIVEP1	6	12161902	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5856279	12161902	158953165	880	153290											
DEK	7913	broad.mit.edu	37	chr6	18236636	18236636	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattcagagataagtgaaaGaatttttctagcaaaagcaa	7	4	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18236636	C	C	18236636	1	2	191	0	1	0	0	0	0	0	0	0	4464	957	33	4		4	DEK	6	18236636	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	6074734	18236636	152878431	881	153291											
HIST1H2BE	8344	broad.mit.edu	37	chr6	26183982	26183982	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccgaggatcaggagatgtAgatttcattttctttcctaa	8	7	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26183982	T	T	26183982	1	4	191	0	1	0	0	0	0	0	0	0	7211	435	15	5		5	HIST1H2BE	6	26183982	5'Flank	SNP	A	TCGA-64-5781-01A-01D-1625-08	7947346	26183982	144931085	882	153292											
HIST1H2BH	8345	broad.mit.edu	37	chr6	26252218	26252218	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggccaagcacgccgtgtccGagggcactaaggccgtcacc	13	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26252218	A	A	26252218	3	1	191	1	0	0	0	0	1	0	0	0	7214	1059	37	4	342	4	HIST1H2BH	6	26252218	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	68236	26252218	144862849	883	153293											
OR2J3	442186	broad.mit.edu	37	chr6	29080108	29080108	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgtttctgccacctgctGgctgtggcttcttgggtaag	12	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29080108	T	T	29080108	2	4	191	1	0	0	0	0	0	0	0	1	11098	1335	47	2		2	OR2J3	6	29080108	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2827890	29080108	142034959	884	153294											
OR10C1	442194	broad.mit.edu	37	chr6	29407951	29407951	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtctccactgatgctgcCctccagtcccctatgtactt	7	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29407951	T	T	29407951	2	4	191	1	0	0	0	0	0	0	0	1	10992	610	22	4		4	OR10C1	6	29407951	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	327843	29407951	141707116	885	153295											
DHX16	8449	broad.mit.edu	37	chr6	30638278	30638278	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaatggaggggtgtgaggCcaaagagcccccacactgac	14	10	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30638278	A	A	30638278	1	1	191	0	1	0	0	0	0	0	0	0	4542	754	26	3		3	DHX16	6	30638278	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1230327	30638278	140476789	886	153296											
BAT1	7919	broad.mit.edu	37	chr6	31500659	31500659	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacccatgcagcgtcaacttCgtctcatcatccacgaagat	6	14	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31500659	A	A	31500659	2	1	191	1	0	0	0	0	0	0	0	1	1323	871	31	3		3	BAT1	6	31500659	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	862381	31500659	139614408	887	153297											
BAT1	7919	broad.mit.edu	37	chr6	31514348	31514357	+	5'UTR	DEL	TGGCCGATGC	-	-													actggccatttctgttgttaTggccgatgctgttttgaatg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31514357	-	-	31514348	6	5	191	0	1	1	0	1	0	0	0	0	1323	1479	51	0		0	BAT1	6	31514348	5'UTR	DEL	TGGCCGATGC	TCGA-64-5781-01A-01D-1625-08	13689	31514348	139600719	888	153298											
NOTCH4	4855	broad.mit.edu	37	chr6	32188337	32188337	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgcagtgaaagctaccagcaGagttctggcaggtgcccccg	13	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32188337	C	C	32188337	3	2	191	1	0	0	0	0	1	0	0	0	10646	942	33	4	5107	4	NOTCH4	6	32188337	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	673989	32188337	138926730	889	153299											
HLA-DRA	3122	broad.mit.edu	37	chr6	32411630	32411630	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcatcattattgggaccatCttcatcatcaagggattgcg	10	9	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32411630	G	G	32411630	3	3	191	1	0	0	0	0	1	0	0	0	7274	903	32	4	722	4	HLA-DRA	6	32411630	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	223293	32411630	138703437	890	153300											
SYNGAP1	8831	broad.mit.edu	37	chr6	33403423	33403424	+	Intron	INS	-	G	G													aaggggacacaacctgtgcaINSgggcaaaggttgcaccaaca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33403424	G	G	33403423	6	5	191	0	1	1	1	0	0	0	0	0	15566	203	7	0		0	SYNGAP1	6	33403423	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	991793	33403423	137711644	891	153301											
SRPK1	6732	broad.mit.edu	37	chr6	35810348	35810348	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttcccctgaatgaggttCaaacaaatagtcacctgtgg	8	11	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35810348	G	G	35810348	3	3	191	1	0	0	0	0	1	0	0	0	15277	835	29	4	325	4	SRPK1	6	35810348	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2406925	35810348	135304719	892	153302											
C6orf222	389384	broad.mit.edu	37	chr6	36291345	36291345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaactgagtcagggccCctgaccttgaggagatctca	12	10	2	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36291345	A	A	36291345	1	1	191	0	1	0	0	0	0	0	0	0	2379	638	22	2		2	C6orf222	6	36291345	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	480997	36291345	134823722	893	153303											
TBC1D22B	55633	broad.mit.edu	37	chr6	37299039	37299039	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagccgtggaccccggccagGaaccactcctgttgtacaaa	11	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37299039	T	T	37299039	1	4	191	0	1	0	0	0	0	0	0	0	15731	1189	41	3		3	TBC1D22B	6	37299039	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	1007694	37299039	133816028	894	153304											
KIF6	221458	broad.mit.edu	37	chr6	39387722	39387722	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacagaatatcatctgcttAccaattttacttcttgcttc	3	11	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39387722	T	T	39387722	5	4	191	1	0	0	0	0	0	0	1	0	8378	405	14	5	668	5	KIF6	6	39387722	Splice_Site	SNP	A	TCGA-64-5781-01A-01D-1625-08	2088683	39387722	131727345	895	153305											
TBCC	6903	broad.mit.edu	37	chr6	42713641	42713641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtggcgacgaaaaagtgGctgttctccttctctacctc	10	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42713641	T	T	42713641	3	4	191	1	0	0	0	0	1	0	0	0	15753	1194	42	3	873	3	TBCC	6	42713641	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3325919	42713641	128401426	896	153306											
ABCC10	89845	broad.mit.edu	37	chr6	43417772	43417772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaccagccccactccctgttCcagcagctgctgcagagcag	9	17	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43417772	A	A	43417772	3	1	191	1	0	0	0	0	1	0	0	0	50	854	30	3	4416	3	ABCC10	6	43417772	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	704131	43417772	127697295	897	153307											
MRPL14	64928	broad.mit.edu	37	chr6	44084201	44084201	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgagtttttactcctgttCtagtcaccgtaatacccagc	6	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44084201	T	T	44084201	1	4	191	0	1	0	0	0	0	0	0	0	9873	928	32	4		4	MRPL14	6	44084201	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	666429	44084201	127030866	898	153308											
CAPN11	11131	broad.mit.edu	37	chr6	44144383	44144383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcacaagacggaggacgGggagttctggtcagtgtggc	18	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44144383	T	T	44144383	3	4	191	1	0	0	0	0	1	0	0	0	2650	1232	43	2	1105	2	CAPN11	6	44144383	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	60182	44144383	126970684	899	153309											
SPATS1	221409	broad.mit.edu	37	chr6	44328107	44328107	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcataagcgagggcaattCtagggtaaactatgtgagat	11	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44328107	G	G	44328107	1	3	191	0	1	0	0	0	0	0	0	0	15134	928	32	4		4	SPATS1	6	44328107	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	183724	44328107	126786960	900	153310											
CD2AP	23607	broad.mit.edu	37	chr6	47592011	47592011	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccagggattcagaagcaacGctatgaacttcagctgactt	9	10	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47592011	C	C	47592011	1	2	191	0	1	0	0	0	0	0	0	0	3024	1102	38	4		4	CD2AP	6	47592011	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	3263904	47592011	123523056	901	153311											
OPN5	221391	broad.mit.edu	37	chr6	47779328	47779328	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagtagtcgtttgacatatAcatatgtatgtatatgtaca	7	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47779328	G	G	47779328	1	3	191	0	1	0	0	0	0	0	0	0	10977	406	14	5		5	OPN5	6	47779328	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	187317	47779328	123335739	902	153312											
RHAG	6005	broad.mit.edu	37	chr6	49583235	49583235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcgttcactaccatgcctGgcttggatgttctttttgag	10	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49583235	T	T	49583235	1	4	191	0	1	0	0	0	0	0	0	0	13424	1363	47	2		2	RHAG	6	49583235	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1803907	49583235	121531832	903	153313											
DEFB114	245928	broad.mit.edu	37	chr6	49928016	49928016	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttcttttcaaaacatatCatcttcttcatacaatttct	0	11	7	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49928016	T	T	49928016	3	4	191	1	0	0	0	0	1	0	0	0	4442	826	29	4	13	4	DEFB114	6	49928016	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	344781	49928016	121187051	904	153314											
TFAP2D	83741	broad.mit.edu	37	chr6	50681882	50681882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcggtggcggcggtggcgGcggcggtggcagcctcccct	21	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50681882	T	T	50681882	1	4	191	0	1	0	0	0	0	0	0	0	15913	1218	42	3		3	TFAP2D	6	50681882	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	753866	50681882	120433185	905	153315											
IL17F	112744	broad.mit.edu	37	chr6	52103604	52103604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggttttcattgatgatgcCaatgtcaagcttcatactac	7	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52103604	A	A	52103604	3	1	191	1	0	0	0	0	1	0	0	0	7708	594	21	2	321	2	IL17F	6	52103604	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1421722	52103604	119011463	906	153316											
MCM3	4172	broad.mit.edu	37	chr6	52134160	52134160	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattcagagttctgtgttctCtacagataccatataaaaat	5	7	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52134160	G	G	52134160	1	3	191	0	1	0	0	0	0	0	0	0	9480	928	32	4		4	MCM3	6	52134160	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	30556	52134160	118980907	907	153317											
PRIM2	5558	broad.mit.edu	37	chr6	57398085	57398085	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaaatattacagggtaccTgataagtcttccacttaact	5	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57398085	A	A	57398085	1	1	191	0	1	0	0	0	0	0	0	0	12597	1595	55	5		5	PRIM2	6	57398085	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	5263925	57398085	113716982	908	153318											
PHF3	23469	broad.mit.edu	37	chr6	64356528	64356528	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgccctatttctaggatcCaacctggagaatgaagtctg	10	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64356528	T	T	64356528	2	4	191	1	0	0	0	0	0	0	0	1	11931	581	21	4		4	PHF3	6	64356528	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	6958443	64356528	106758539	909	153319											
BAI3	577	broad.mit.edu	37	chr6	69759244	69759244	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgcccactttgaggtaagCtacaaagtaataaactgttg	8	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69759244	G	G	69759244	1	3	191	0	1	0	0	0	0	0	0	0	1305	812	28	4		4	BAI3	6	69759244	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	5402716	69759244	101355823	910	153320											
COL19A1	1310	broad.mit.edu	37	chr6	70850878	70850878	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaaggagaaaaaggagaTagagtaagtagatattttat	10	1	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70850878	A	A	70850878	3	1	191	1	0	0	0	0	1	0	0	0	3708	1403	49	5	1553	5	COL19A1	6	70850878	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1091634	70850878	100264189	911	153321											
COL19A1	1310	broad.mit.edu	37	chr6	70890392	70890392	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatataggtttccctggaCcagaaggaccctcaggaaag	12	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70890392	A	A	70890392	3	1	191	1	0	0	0	0	1	0	0	0	3708	507	18	3	2922	3	COL19A1	6	70890392	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	39514	70890392	100224675	912	153322											
COL12A1	1303	broad.mit.edu	37	chr6	75839977	75839977	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaatacaatagagtttGttgcctgcctgtgagcatta	8	6	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75839977	T	T	75839977	1	4	191	0	1	0	0	0	0	0	0	0	3701	1392	48	3		3	COL12A1	6	75839977	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4949585	75839977	95275090	913	153323											
IMPG1	3617	broad.mit.edu	37	chr6	76744338	76744338	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtggtgtttaggctcacCtgctggagaagatccaggtg	14	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76744338	T	T	76744338	2	4	191	1	0	0	0	0	0	0	0	1	7798	695	24	4		4	IMPG1	6	76744338	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	904361	76744338	94370729	914	153324											
DOPEY1	23033	broad.mit.edu	37	chr6	83828546	83828546	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttcagggcattttttaaaGaggaaaaaaataatatatat	6	2	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83828546	A	A	83828546	1	1	191	0	1	0	0	0	0	0	0	0	4747	957	33	4		4	DOPEY1	6	83828546	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	7084208	83828546	87286521	915	153325											
SNAP91	9892	broad.mit.edu	37	chr6	84324566	84324566	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaaaaactcactccataCagtactcacccttcacttaa	2	14	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84324566	A	A	84324566	1	1	191	0	1	0	0	0	0	0	0	0	14947	493	17	3		3	SNAP91	6	84324566	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	496020	84324566	86790501	916	153326											
MRAP2	112609	broad.mit.edu	37	chr6	84772676	84772676	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttttatgttttttgtgctGaccttgctgaccaagacagg	9	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84772676	T	T	84772676	2	4	191	1	0	0	0	0	0	0	0	1	9848	1277	45	3		3	MRAP2	6	84772676	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	448110	84772676	86342391	917	153327											
SNX14	57231	broad.mit.edu	37	chr6	86277094	86277094	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctaattatcatgtaatgCacagtactgcccccaaaaca	6	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86277094	A	A	86277094	1	1	191	0	1	0	0	0	0	0	0	0	14999	725	25	3		3	SNX14	6	86277094	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1504418	86277094	84837973	918	153328											
CGA	1081	broad.mit.edu	37	chr6	87796049	87796049	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcgtcttcttggaccttagTggagtgggatatgctctaga	12	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87796049	A	A	87796049	2	1	191	1	0	0	0	0	0	0	0	1	3325	1683	59	5		5	CGA	6	87796049	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	1518955	87796049	83319018	919	153329											
ZNF292	23036	broad.mit.edu	37	chr6	87964645	87964646	+	Frame_Shift_Ins	INS	-	A	A													tctttacgctgtgagctgttINSacttgtattgaaaactcaat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87964646	A	A	87964645	7	5	191	1	0	1	1	0	0	0	0	0	17952	1764	61	0	1328	0	ZNF292	6	87964645	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	168596	87964645	83150422	920	153330											
GABRR1	2569	broad.mit.edu	37	chr6	89888660	89888660	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccagggtcagctgcaccatCatcctgtcgggcttctctcc	10	16	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89888660	A	A	89888660	3	1	191	1	0	0	0	0	1	0	0	0	6236	826	29	3	174	3	GABRR1	6	89888660	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1924015	89888660	81226407	921	153331											
KLHL32	114792	broad.mit.edu	37	chr6	97561554	97561554	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttgtaagaaagtttgtAttattacctgcctggaagaa	9	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97561554	G	G	97561554	1	3	191	0	1	0	0	0	0	0	0	0	8457	464	16	5		5	KLHL32	6	97561554	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	7672894	97561554	73553513	922	153332											
SIM1	6492	broad.mit.edu	37	chr6	100898177	100898177	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtggactgaggctgtctctGagatgtacatgatcttccca	11	9	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100898177	A	A	100898177	3	1	191	1	0	0	0	0	1	0	0	0	14436	1294	45	4	2022	4	SIM1	6	100898177	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3336623	100898177	70216890	923	153333											
ASCC3	10973	broad.mit.edu	37	chr6	100964152	100964152	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcagttcaggaagggactcGatggaggtccgacccctagc	13	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100964152	T	T	100964152	2	4	191	1	0	0	0	0	0	0	0	1	1037	1048	37	3		3	ASCC3	6	100964152	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	65975	100964152	70150915	924	153334											
PREP	5550	broad.mit.edu	37	chr6	105771496	105771496	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatggcccagcctgaaagtCagacttcctaactctcacat	7	13	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105771496	G	G	105771496	1	3	191	0	1	0	0	0	0	0	0	0	12580	841	29	4		4	PREP	6	105771496	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4807344	105771496	65343571	925	153335											
NR2E1	7101	broad.mit.edu	37	chr6	108502608	108502608	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtttcaccatgttggccaGgttggtctcgaactgctgac	13	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108502608	A	A	108502608	1	1	191	0	1	0	0	0	0	0	0	0	10720	1015	35	4		4	NR2E1	6	108502608	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2731112	108502608	62612459	926	153336											
RFPL4B	442247	broad.mit.edu	37	chr6	112671283	112671283	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgtaagaagatccaccacGatctgacaaaagatcccagg	9	10	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112671283	T	T	112671283	3	4	191	1	0	0	0	0	1	0	0	0	13364	1058	37	3	375	3	RFPL4B	6	112671283	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4168675	112671283	58443784	927	153337											
FAM26E	254228	broad.mit.edu	37	chr6	116837003	116837003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccatgcctacgtttgctGcctgggaggctgcttcagag	12	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116837003	T	T	116837003	3	4	191	1	0	0	0	0	1	0	0	0	5601	1319	46	3	787	3	FAM26E	6	116837003	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4165720	116837003	54278064	928	153338											
RFX6	222546	broad.mit.edu	37	chr6	117244365	117244365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagtaatgcataatctcacCttgaacaatgcatccagttt	6	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117244365	A	A	117244365	2	1	191	1	0	0	0	0	0	0	0	1	13375	668	24	2		2	RFX6	6	117244365	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	407362	117244365	53870702	929	153339											
C6orf204	387119	broad.mit.edu	37	chr6	118805031	118805031	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagttttaagctaaaagcaAacaattatgaaccttcagta	5	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118805031	T	T	118805031	1	4	191	0	1	0	0	0	0	0	0	0	2376	29	1	5		5	C6orf204	6	118805031	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1560666	118805031	52310036	930	153340											
NKAIN2	154215	broad.mit.edu	37	chr6	124676569	124676569	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taagtaaggcagagtctcatCctgttctgcttgcttagctg	10	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124676569	A	A	124676569	1	1	191	0	1	0	0	0	0	0	0	0	10531	870	30	3		3	NKAIN2	6	124676569	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	5871538	124676569	46438498	931	153341											
PTPRK	5796	broad.mit.edu	37	chr6	128294835	128294835	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggataatcgtccggccttcCccttcctcgcattcctcctg	7	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128294835	A	A	128294835	2	1	191	1	0	0	0	0	0	0	0	1	12913	610	22	2		2	PTPRK	6	128294835	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	3618266	128294835	42820232	932	153342											
LAMA2	3908	broad.mit.edu	37	chr6	129513901	129513901	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccagcaggacgacttggActcacctcagcagatcagca	9	15	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129513901	G	G	129513901	3	3	191	1	0	0	0	0	1	0	0	0	8678	275	10	5	1731	5	LAMA2	6	129513901	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1219066	129513901	41601166	933	153343											
TMEM200A	114801	broad.mit.edu	37	chr6	130762366	130762366	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccttccaagacaactgatGataagaccagcggctctaag	8	12	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130762366	A	A	130762366	3	1	191	1	0	0	0	0	1	0	0	0	16246	1290	45	4	801	4	TMEM200A	6	130762366	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1248465	130762366	40352701	934	153344											
BCLAF1	9774	broad.mit.edu	37	chr6	136599485	136599485	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgtgatttacttttcaaCggactctcttcttggggttc	8	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136599485	A	A	136599485	2	1	191	1	0	0	0	0	0	0	0	1	1388	523	19	3		3	BCLAF1	6	136599485	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	5837119	136599485	34515582	935	153345											
BCLAF1	9774	broad.mit.edu	37	chr6	136600958	136600958	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgagaactagactgtgatCtagactttgaccttgaagaa	9	7	1	7			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136600958	A	A	136600958	3	1	191	1	0	0	0	0	1	0	0	0	1388	913	32	3	2759	3	BCLAF1	6	136600958	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1473	136600958	34514109	936	153346											
UTRN	7402	broad.mit.edu	37	chr6	144757052	144757052	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgattagtgtgggtttttCttggctttgtttttacagag	12	3	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144757052	T	T	144757052	1	4	191	0	1	0	0	0	0	0	0	0	17230	928	32	4		4	UTRN	6	144757052	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	8156094	144757052	26358015	937	153347											
UTRN	7402	broad.mit.edu	37	chr6	144757093	144757093	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagcgcctgaggaggagcAtgagagtccccgagctgaaa	14	10	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144757093	T	T	144757093	3	4	191	1	0	0	0	0	1	0	0	0	17230	217	8	5	912	5	UTRN	6	144757093	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	41	144757093	26357974	938	153348											
SHPRH	257218	broad.mit.edu	37	chr6	146275911	146275911	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaatcttctaacatttcaCcactgaaggatgactccacc	4	14	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146275911	T	T	146275911	3	4	191	1	0	0	0	0	1	0	0	0	14404	507	18	4	4663	4	SHPRH	6	146275911	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1518818	146275911	24839156	939	153349											
STXBP5	134957	broad.mit.edu	37	chr6	147680374	147680374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctatgggttggaacaacGctaggaacagtgcttgtcat	12	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147680374	T	T	147680374	2	4	191	1	0	0	0	0	0	0	0	1	15474	1074	38	3		3	STXBP5	6	147680374	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1404463	147680374	23434693	940	153350											
SYNE1	23345	broad.mit.edu	37	chr6	152560625	152560625	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attaaaggtctattttgcagCaggaagtttgcagcacagaa	10	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152560625	G	G	152560625	1	3	191	0	1	0	0	0	0	0	0	0	15564	725	25	4		4	SYNE1	6	152560625	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4880251	152560625	18554442	941	153351											
TIAM2	26230	broad.mit.edu	37	chr6	155485821	155485821	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttgttgccatcggcactTgtggggcttgacccaacaac	11	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155485821	C	C	155485821	1	2	191	0	1	0	0	0	0	0	0	0	16014	1827	63	5		5	TIAM2	6	155485821	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2925196	155485821	15629246	942	153352											
IGF2R	3482	broad.mit.edu	37	chr6	160517644	160517644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttggtacacctcagccGtgtgtcctctggggtgagta	12	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160517644	T	T	160517644	3	4	191	1	0	0	0	0	1	0	0	0	7646	1145	40	3	7007	3	IGF2R	6	160517644	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5031823	160517644	10597423	943	153353											
LPA	4018	broad.mit.edu	37	chr6	160978466	160978466	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggaactggaacaacagtgGgagtctctaggacacctgat	12	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160978466	A	A	160978466	3	1	191	1	0	0	0	0	1	0	0	0	8990	1232	43	4	1397	4	LPA	6	160978466	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	460822	160978466	10136601	944	153354											
LPA	4018	broad.mit.edu	37	chr6	161010597	161010597	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacatacccatttgggtagTattctgtggttctctgatgc	10	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161010597	A	A	161010597	3	1	191	1	0	0	0	0	1	0	0	0	8990	1638	57	5	2251	5	LPA	6	161010597	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	32131	161010597	10104470	945	153355											
PLG	5340	broad.mit.edu	37	chr6	161162348	161162348	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcttttctttcagtcctgCcgtcatcactgacaaagtaa	6	11	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161162348	T	T	161162348	3	4	191	1	0	0	0	0	1	0	0	0	12181	739	26	4	2094	4	PLG	6	161162348	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	151751	161162348	9952719	946	153356											
MAP3K4	4216	broad.mit.edu	37	chr6	161530849	161530849	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaagaggtgtcaaggctGggacttcaggaacatgtgat	14	5	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161530849	T	T	161530849	2	4	191	1	0	0	0	0	0	0	0	1	9344	1335	47	2		2	MAP3K4	6	161530849	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	368501	161530849	9584218	947	153357											
TCP10L2	401285	broad.mit.edu	37	chr6	167591995	167591995	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactggaaggccgactcccGgtgcagaaagacgggaggtg	16	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167591995	T	T	167591995	3	4	191	1	0	0	0	0	1	0	0	0	15834	1116	39	1	636	1	TCP10L2	6	167591995	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	6061146	167591995	3523072	948	153358											
UNC93A	54346	broad.mit.edu	37	chr6	167719471	167719471	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atctgcttctcggccactgaCgcgctgtgctccgtgttgta	11	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167719471	G	G	167719471	3	3	191	1	0	0	0	0	1	0	0	0	17122	535	19	4	931	4	UNC93A	6	167719471	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	127476	167719471	3395596	949	153359											
MLLT4	4301	broad.mit.edu	37	chr6	168315512	168315512	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagtggaggtgtttttaAaataaatgggatgtcctttt	12	2	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168315512	T	T	168315512	1	4	191	0	1	0	0	0	0	0	0	0	9722	29	1	5		5	MLLT4	6	168315512	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	596041	168315512	2799555	950	153360											
CARD11	84433	broad.mit.edu	37	chr7	2984049	2984049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgtcatctgcttcttctcatCctccagctgccgcaacctgg	7	17	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2984049	A	A	2984049	3	1	191	1	0	0	0	0	1	0	0	0	2671	855	30	3	3067	3	CARD11	7	2984049	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08		2984049	156154614	951	153361											
C7orf28B	221960	broad.mit.edu	37	chr7	6864440	6864440	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctattgaaaacgctaagttCaatgtcgacctcttgtgtca	8	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6864440	G	G	6864440	1	3	191	0	1	0	0	0	0	0	0	0	2409	841	29	4		4	C7orf28B	7	6864440	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3880391	6864440	152274223	952	153362											
C1GALT1	56913	broad.mit.edu	37	chr7	7283162	7283162	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacttttttagggtcctgGttgctgctctgatcttgcag	10	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7283162	T	T	7283162	3	4	191	1	0	0	0	0	1	0	0	0	1972	1261	44	3	906	3	C1GALT1	7	7283162	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	418722	7283162	151855501	953	153363											
THSD7A	221981	broad.mit.edu	37	chr7	11632780	11632780	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtaaagatattttttAtgtgtaaaaattactgttgc	7	2	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11632780	G	G	11632780	1	3	191	0	1	0	0	0	0	0	0	0	16002	464	16	5		5	THSD7A	7	11632780	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	4349618	11632780	147505883	954	153364											
SCIN	85477	broad.mit.edu	37	chr7	12679984	12679984	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatcagatccgagtctccCaaggcaaagagcctgttcac	8	15	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12679984	T	T	12679984	4	4	191	1	0	0	0	0	0	1	0	0	14018	595	21	4	1465	4	SCIN	7	12679984	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1047204	12679984	146458679	955	153365											
ETV1	2115	broad.mit.edu	37	chr7	14028502	14028502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctagaagcagagtcgccCtacagtggcaacaaagcaga	10	11	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14028502	A	A	14028502	1	1	191	0	1	0	0	0	0	0	0	0	5319	696	24	2		2	ETV1	7	14028502	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1348518	14028502	145110161	956	153366											
TMEM195	392636	broad.mit.edu	37	chr7	15240919	15240919	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaaattcaggttatttccaAgggtgagaggtgagttgttt	12	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15240919	T	T	15240919	2	4	191	1	0	0	0	0	0	0	0	1	16240	59	3	5		5	TMEM195	7	15240919	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	1212417	15240919	143897744	957	153367											
TMEM195	392636	broad.mit.edu	37	chr7	15584536	15584536	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	taactggtcagttcaatgctCctgaaaaatagactggaaga	9	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15584536	G	G	15584536	3	3	191	1	0	0	0	0	1	0	0	0	16240	854	30	4	1111	4	TMEM195	7	15584536	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	343617	15584536	143554127	958	153368											
TMEM195	392636	broad.mit.edu	37	chr7	15601446	15601446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccctgggaaactgaaacatCctgctgggcttctgggttct	11	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15601446	A	A	15601446	3	1	191	1	0	0	0	0	1	0	0	0	16240	855	30	3	1364	3	TMEM195	7	15601446	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	16910	15601446	143537217	959	153369											
ISPD	729920	broad.mit.edu	37	chr7	16341035	16341035	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaactgacagtcataagGccaaacatacccttaataat	6	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16341035	T	T	16341035	1	4	191	0	1	0	0	0	0	0	0	0	7934	1218	42	3		3	ISPD	7	16341035	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	739589	16341035	142797628	960	153370											
HDAC9	9734	broad.mit.edu	37	chr7	18688097	18688097	+	Frame_Shift_Del	DEL	C	-	-													tttttttttcaggtggagttCccttacatcctcagtctccc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18688097	-	-	18688097	7	5	191	1	0	1	0	1	0	0	0	0	7081	855	30	0	1296	0	HDAC9	7	18688097	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	2347062	18688097	140450566	961	153371											
HDAC9	9734	broad.mit.edu	37	chr7	18788727	18788727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatacagagtatctggtcacGactgcaagaaactgggctgc	11	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18788727	T	T	18788727	3	4	191	1	0	0	0	0	1	0	0	0	7081	1058	37	3	2110	3	HDAC9	7	18788727	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	100630	18788727	140349936	962	153372											
FERD3L	222894	broad.mit.edu	37	chr7	19184799	19184799	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacttcgcactcctcttcttCtgggtccccctcttcaaacc	4	19	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19184799	T	T	19184799	3	4	191	1	0	0	0	0	1	0	0	0	5873	922	32	4	317	4	FERD3L	7	19184799	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	396072	19184799	139953864	963	153373											
TWISTNB	221830	broad.mit.edu	37	chr7	19738424	19738424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattgagatcaagatatcCcaacaggctaagattttcta	6	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19738424	A	A	19738424	1	1	191	0	1	0	0	0	0	0	0	0	16910	638	22	2		2	TWISTNB	7	19738424	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	553625	19738424	139400239	964	153374											
TWISTNB	221830	broad.mit.edu	37	chr7	19748335	19748335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgtcgtcagcacatccaCctgctttacttcccgtgcac	7	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19748335	A	A	19748335	1	1	191	0	1	0	0	0	0	0	0	0	16910	522	18	3		3	TWISTNB	7	19748335	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	9911	19748335	139390328	965	153375											
ABCB5	340273	broad.mit.edu	37	chr7	20721223	20721224	+	Nonsense_Mutation	DNP	GG	TT	TT													ctaaaggatggaatgctggcGgagaaaggagcacatgctga					rs60403688	byFrequency;by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	20721224	TT	TT	20721223	4	4	191	1	0	0	0	0	0	1	0	0	44	1103	39	1	1898	1	ABCB5	7	20721223	Nonsense_Mutation	DNP	GG	TCGA-64-5781-01A-01D-1625-08	972888	20721223	138417440	966	153376											
DNAH11	8701	broad.mit.edu	37	chr7	21639422	21639422	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggaaaataggaagctcttCaaagccaatccctctctgga	8	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21639422	T	T	21639422	2	4	191	1	0	0	0	0	0	0	0	1	4639	825	29	4		4	DNAH11	7	21639422	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	918199	21639422	137499241	967	153377											
DNAH11	8701	broad.mit.edu	37	chr7	21723603	21723604	+	Intron	INS	-	T	T													ccagataggaaaaacaacccINSaaaaaagtcccctagtgtga							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21723604	T	T	21723603	6	5	191	0	1	1	1	0	0	0	0	0	4639	609	21	0		0	DNAH11	7	21723603	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	84181	21723603	137415060	968	153378											
DNAH11	8701	broad.mit.edu	37	chr7	21934680	21934680	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggtgctgggttagtgttctGaataatgcttcctaagaact	11	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21934680	A	A	21934680	1	1	191	0	1	0	0	0	0	0	0	0	4639	1305	45	4		4	DNAH11	7	21934680	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	211077	21934680	137203983	969	153379											
STK31	56164	broad.mit.edu	37	chr7	23871748	23871748	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtaacacctgtttttcCttgcaggatgataaagtcaa	7	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23871748	T	T	23871748	1	4	191	0	1	0	0	0	0	0	0	0	15414	696	24	4		4	STK31	7	23871748	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1937068	23871748	135266915	970	153380											
OSBPL3	26031	broad.mit.edu	37	chr7	24874067	24874067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctcgtggcttggggacCgaggctggacagtggcaagg	19	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24874067	A	A	24874067	1	1	191	0	1	0	0	0	0	0	0	0	11373	667	23	1		1	OSBPL3	7	24874067	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1002319	24874067	134264596	971	153381											
CYCS	54205	broad.mit.edu	37	chr7	25163541	25163541	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttatattcctgcattttgTgttgttttatttaacaagtg	7	4	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25163541	A	A	25163541	1	1	191	0	1	0	0	0	0	0	0	0	4169	1711	59	5		5	CYCS	7	25163541	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	289474	25163541	133975122	972	153382											
HOXA5	3202	broad.mit.edu	37	chr7	27183050	27183050	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccaaagtggccggagccCgagcggccgacgctgagatc	16	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27183050	A	A	27183050	2	1	191	1	0	0	0	0	0	0	0	1	7362	639	23	1		1	HOXA5	7	27183050	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2019509	27183050	131955613	973	153383											
EVX1	2128	broad.mit.edu	37	chr7	27285713	27285713	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgccgcctccgccgccgcctCgcccttcagcggctcgctgc	11	23	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27285713	T	T	27285713	3	4	191	1	0	0	0	0	1	0	0	0	5336	893	31	4	903	4	EVX1	7	27285713	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	102663	27285713	131852950	974	153384											
FAM188B	84182	broad.mit.edu	37	chr7	30891977	30891977	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atataagtaaatccttcctcAgctggggacaggctggcctt	10	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30891977	T	T	30891977	1	4	191	0	1	0	0	0	0	0	0	0	5561	203	7	5		5	FAM188B	7	30891977	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	3606264	30891977	128246686	975	153385											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31125054	31125054	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaccactgcttcatctcCactgtgagtgagccaagcag	9	13	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31125054	T	T	31125054	2	4	191	1	0	0	0	0	0	0	0	1	303	581	21	4		4	ADCYAP1R1	7	31125054	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	233077	31125054	128013609	976	153386											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31126008	31126008	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgcaggtggaatgtaAggccgtcatggttttcttcc	11	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31126008	T	T	31126008	3	4	191	1	0	0	0	0	1	0	0	0	303	72	3	5	714	5	ADCYAP1R1	7	31126008	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	954	31126008	128012655	977	153387											
NPSR1	387129	broad.mit.edu	37	chr7	34888348	34888348	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgccaacatgtgggtttCtcatgtccaaactctccagc	7	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34888348	T	T	34888348	1	4	191	0	1	0	0	0	0	0	0	0	10695	928	32	4		4	NPSR1	7	34888348	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3762340	34888348	124250315	978	153388											
ELMO1	9844	broad.mit.edu	37	chr7	36895148	36895148	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggggcatgtctgggccCggccacttcagttacagtca	14	11	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36895148	A	A	36895148	1	1	191	0	1	0	0	0	0	0	0	0	5107	667	23	1		1	ELMO1	7	36895148	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	2006800	36895148	122243515	979	153389											
ELMO1	9844	broad.mit.edu	37	chr7	37256147	37256147	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctactgcttcaccacagaaGgaagtcacagaacaaaccac	6	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37256147	C	C	37256147	1	2	191	0	1	0	0	0	0	0	0	0	5107	1015	35	4		4	ELMO1	7	37256147	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	360999	37256147	121882516	980	153390											
TARP	445347	broad.mit.edu	37	chr7	38305109	38305109	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcatggtgttcccctcctGggatcccagaatcgtgttgc	10	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38305109	A	A	38305109	4	1	191	1	0	0	0	0	0	1	0	0	15677	1335	47	4	361	4	TARP	7	38305109	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1048962	38305109	120833554	981	153391											
CDK13	8621	broad.mit.edu	37	chr7	40037171	40037171	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcttgctgatttaccGctgccccctgagctaccagg	9	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40037171	T	T	40037171	2	4	191	1	0	0	0	0	0	0	0	1	3159	1074	38	3		3	CDK13	7	40037171	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1732062	40037171	119101492	982	153392											
INHBA	3624	broad.mit.edu	37	chr7	41729730	41729730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccttctttttcccttcccCctcctcttctttcttcttct	1	19	6	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41729730	A	A	41729730	3	1	191	1	0	0	0	0	1	0	0	0	7811	623	22	2	485	2	INHBA	7	41729730	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1692559	41729730	117408933	983	153393											
HECW1	23072	broad.mit.edu	37	chr7	43447137	43447137	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccctaaaacatatttaaAttaaagtatcctttatttta	1	8	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43447137	G	G	43447137	1	3	191	0	1	0	0	0	0	0	0	0	7109	116	4	5		5	HECW1	7	43447137	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1717407	43447137	115691526	984	153394											
HECW1	23072	broad.mit.edu	37	chr7	43484068	43484068	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaccagggcatggtctctGtgggacctgaaggggctggg	19	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43484068	A	A	43484068	3	1	191	1	0	0	0	0	1	0	0	0	7109	1377	48	4	1331	4	HECW1	7	43484068	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	36931	43484068	115654595	985	153395											
HECW1	23072	broad.mit.edu	37	chr7	43546663	43546663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaacagagcgagactcCttctcaaaaaagaaaaaaag	9	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43546663	A	A	43546663	1	1	191	0	1	0	0	0	0	0	0	0	7109	696	24	2		2	HECW1	7	43546663	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	62595	43546663	115592000	986	153396											
HECW1	23072	broad.mit.edu	37	chr7	43581632	43581632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttggaaaagggattttGttttttactatggaaaatgc	12	2	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43581632	T	T	43581632	1	4	191	0	1	0	0	0	0	0	0	0	7109	1392	48	3		3	HECW1	7	43581632	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	34969	43581632	115557031	987	153397											
AEBP1	165	broad.mit.edu	37	chr7	44153462	44153462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgacgcctacaacaccgcCtgcggcttcgggcacagatg	12	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44153462	A	A	44153462	3	1	191	1	0	0	0	0	1	0	0	0	349	680	24	2	3161	2	AEBP1	7	44153462	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	571830	44153462	114985201	988	153398											
ADCY1	107	broad.mit.edu	37	chr7	45743059	45743059	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgccggcccacgtcgccCagcacttcctcatgtccaac	7	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45743059	T	T	45743059	4	4	191	1	0	0	0	0	0	1	0	0	292	595	21	4	2597	4	ADCY1	7	45743059	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1589597	45743059	113395604	989	153399											
PKD1L1	168507	broad.mit.edu	37	chr7	47930295	47930295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagccgcggcatccagttgGtgtgcagtggaggagtcgaa	18	8	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47930295	T	T	47930295	3	4	191	1	0	0	0	0	1	0	0	0	12059	1252	44	3	6197	3	PKD1L1	7	47930295	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2187236	47930295	111208368	990	153400											
FIGNL1	63979	broad.mit.edu	37	chr7	50514903	50514903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtatgcatctgccttcggtCcggtacatatgccagatgta	11	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50514903	A	A	50514903	3	1	191	1	0	0	0	0	1	0	0	0	5949	855	30	3	1945	3	FIGNL1	7	50514903	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2584608	50514903	108623760	991	153401											
COBL	23242	broad.mit.edu	37	chr7	51204048	51204048	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgttggggaagagacaaaCagaaaaccaaatcagtatga	10	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51204048	T	T	51204048	1	4	191	0	1	0	0	0	0	0	0	0	3685	493	17	4		4	COBL	7	51204048	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	689145	51204048	107934615	992	153402											
POM121L12	285877	broad.mit.edu	37	chr7	53103830	53103830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccctggagatcccctggaCagagagcccgccccgcaggc	13	18	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53103830	A	A	53103830	3	1	191	1	0	0	0	0	1	0	0	0	12336	479	17	3	468	3	POM121L12	7	53103830	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1899782	53103830	106034833	993	153403											
VSTM2A	222008	broad.mit.edu	37	chr7	54617582	54617582	+	Frame_Shift_Del	DEL	G	-	-													gcttcagatttccaaagtgaGgaaaaaggatgaaggcttat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54617582	-	-	54617582	7	5	191	1	0	1	0	1	0	0	0	0	17356	1000	35	0	367	0	VSTM2A	7	54617582	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	1513752	54617582	104521081	994	153404											
SEC61G	23480	broad.mit.edu	37	chr7	54826833	54826833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgttcgcccgtaccgacCggtgggaagaaactcaccta	10	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54826833	A	A	54826833	1	1	191	0	1	0	0	0	0	0	0	0	14116	667	23	1		1	SEC61G	7	54826833	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	209251	54826833	104311830	995	153405											
ZNF679	168417	broad.mit.edu	37	chr7	63726720	63726720	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaaagaattcatactggaGagaaaccctacagatgtgag	9	6	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63726720	C	C	63726720	3	2	191	1	0	0	0	0	1	0	0	0	18213	943	33	4	723	4	ZNF679	7	63726720	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	8899887	63726720	95411943	996	153406											
WBSCR17	64409	broad.mit.edu	37	chr7	71036223	71036223	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggtgcctatggaagggcttCtggcactgacacctcaatga	12	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71036223	A	A	71036223	1	1	191	0	1	0	0	0	0	0	0	0	17391	928	32	3		3	WBSCR17	7	71036223	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	7309503	71036223	88102440	997	153407											
WBSCR17	64409	broad.mit.edu	37	chr7	71142239	71142239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctgcttggaccaggggcCgctggagaaccacacagcaa	13	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71142239	A	A	71142239	3	1	191	1	0	0	0	0	1	0	0	0	17391	652	23	1	1482	1	WBSCR17	7	71142239	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	106016	71142239	87996424	998	153408											
MLXIPL	51085	broad.mit.edu	37	chr7	73008622	73008622	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttggccggagagcgggcaGagagcagtactggtccagcc	16	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73008622	C	C	73008622	3	2	191	1	0	0	0	0	1	0	0	0	9730	933	33	4	144	4	MLXIPL	7	73008622	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1866383	73008622	86130041	999	153409											
MAGI2	9863	broad.mit.edu	37	chr7	78150938	78150938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgctggttctgctggcGgctttggggtaccgtagtaa	16	7	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78150938	T	T	78150938	3	4	191	1	0	0	0	0	1	0	0	0	9283	1116	39	1	3880	1	MAGI2	7	78150938	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5142316	78150938	80987725	1000	153410											
MAGI2	9863	broad.mit.edu	37	chr7	79082684	79082684	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctccttggggttagggGggctggtggtgagagaatga	21	4	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79082684	T	T	79082684	1	4	191	0	1	0	0	0	0	0	0	0	9283	1247	43	2		2	MAGI2	7	79082684	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	931746	79082684	80055979	1001	153411											
CD36	948	broad.mit.edu	37	chr7	80276204	80276204	+	Intron	SNP	C	T	T													tagtccaaagaatatgccttCtcattttgattgattctaac							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80276204	T	T	80276204	1	4	191	0	1	0	0	0	0	0	0	0	3037	928	32	4		4	CD36	7	80276204	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1193520	80276204	78862459	1002	153412	657	2									
CD36	948	broad.mit.edu	37	chr7	80276206	80276206	+	Intron	SNP	C	T	T													gtccaaagaatatgccttctCattttgattgattctaactt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80276206	T	T	80276206	1	4	191	0	1	0	0	0	0	0	0	0	3037	841	29	4		4	CD36	7	80276206	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2	80276206	78862457	1003	153413	657	2									
CACNA2D1	781	broad.mit.edu	37	chr7	81746367	81746368	+	Frame_Shift_Del	DEL	AT	-	-													ttcttttacttacagccctcAtagatgtcagtaggaatatg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81746368	-	-	81746367	7	5	191	1	0	1	0	1	0	0	0	0	2574	224	8	0	2892	0	CACNA2D1	7	81746367	Frame_Shift_Del	DEL	AT	TCGA-64-5781-01A-01D-1625-08	1470161	81746367	77392296	1004	153414											
PCLO	27445	broad.mit.edu	37	chr7	82544170	82544170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattggtggcaggggtccagCtgcagccctggccattccca	13	13	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82544170	A	A	82544170	3	1	191	1	0	0	0	0	1	0	0	0	11677	797	28	3	2389	3	PCLO	7	82544170	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	797803	82544170	76594493	1005	153415											
PCLO	27445	broad.mit.edu	37	chr7	82545171	82545171	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtcaattaggacataatttCgtggagtatggtgatcaata	10	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82545171	T	T	82545171	3	4	191	1	0	0	0	0	1	0	0	0	11677	884	31	4	3390	4	PCLO	7	82545171	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1001	82545171	76593492	1006	153416											
SEMA3A	10371	broad.mit.edu	37	chr7	83606315	83606315	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaggattttctttctgtaaGattttacttctcttcggctg	7	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83606315	A	A	83606315	1	1	191	0	1	0	0	0	0	0	0	0	14137	957	33	4		4	SEMA3A	7	83606315	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1061144	83606315	75532348	1007	153417											
SEMA3A	10371	broad.mit.edu	37	chr7	83739857	83739857	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgttccacaggcgtacaagtGagtctgattatatgccttaa	9	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83739857	C	C	83739857	3	2	191	1	0	0	0	0	1	0	0	0	14137	1290	45	4	1989	4	SEMA3A	7	83739857	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	133542	83739857	75398806	1008	153418											
SEMA3D	223117	broad.mit.edu	37	chr7	84642099	84642099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcagagctgtacttactGtcttcgatgtcccagcactg	8	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84642099	T	T	84642099	3	4	191	1	0	0	0	0	1	0	0	0	14140	1391	48	3	578	3	SEMA3D	7	84642099	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	902242	84642099	74496564	1009	153419											
ABCB1	5243	broad.mit.edu	37	chr7	87179966	87179966	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgatattttgtggagagctGgataaagtgacaaagaaatt	12	2	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87179966	C	C	87179966	1	2	191	0	1	0	0	0	0	0	0	0	40	1363	47	4		4	ABCB1	7	87179966	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2537867	87179966	71958697	1010	153420											
ABCB1	5243	broad.mit.edu	37	chr7	87229544	87229544	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattagccaaatgcatgaGcctcaggcgcgctggaggtg	13	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87229544	T	T	87229544	1	4	191	0	1	0	0	0	0	0	0	0	40	986	34	3		3	ABCB1	7	87229544	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	49578	87229544	71909119	1011	153421											
RUNDC3B	154661	broad.mit.edu	37	chr7	87370923	87370923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acattttgagatatgtttttTaaaatcttatttaaaattga	4	2	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87370923	C	C	87370923	1	2	191	0	1	0	0	0	0	0	0	0	13856	1769	61	5		5	RUNDC3B	7	87370923	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	141379	87370923	71767740	1012	153422											
ADAM22	53616	broad.mit.edu	37	chr7	87737440	87737440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcctgtgaaatgaagcaGctgattctccttgtgatgca	9	10	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87737440	T	T	87737440	1	4	191	0	1	0	0	0	0	0	0	0	244	986	34	3		3	ADAM22	7	87737440	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	366517	87737440	71401223	1013	153423											
ZNF804B	219578	broad.mit.edu	37	chr7	88956839	88956839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactctcgtcaacctatggGgaaattttaaaggcaaatct	7	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88956839	A	A	88956839	1	1	191	0	1	0	0	0	0	0	0	0	18300	1247	43	4		4	ZNF804B	7	88956839	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1219399	88956839	70181824	1014	153424											
C7orf63	79846	broad.mit.edu	37	chr7	89874756	89874756	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatgtggacagaggaagcCggggcgaccgccgaggccca	17	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89874756	G	G	89874756	2	3	191	1	0	0	0	0	0	0	0	1	2434	639	23	4		4	C7orf63	7	89874756	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	917917	89874756	69263907	1015	153425											
ANKIB1	54467	broad.mit.edu	37	chr7	92015853	92015853	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acttttgctggatttgccttGaagagtggaaaaaacatagt	10	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92015853	A	A	92015853	3	1	191	1	0	0	0	0	1	0	0	0	630	1291	45	4	1690	4	ANKIB1	7	92015853	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2141097	92015853	67122810	1016	153426											
C7orf64	84060	broad.mit.edu	37	chr7	92161862	92161862	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaactactgaaaataaAggtatggaaagcatattgct	8	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92161862	T	T	92161862	3	4	191	1	0	0	0	0	1	0	0	0	2435	86	3	5	457	5	C7orf64	7	92161862	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	146009	92161862	66976801	1017	153427											
PPP1R9A	55607	broad.mit.edu	37	chr7	94915575	94915575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagttcagcagacctcagcGgcttaggagcagaacctaaa	10	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94915575	T	T	94915575	3	4	191	1	0	0	0	0	1	0	0	0	12479	1116	39	1	3733	1	PPP1R9A	7	94915575	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2753713	94915575	64223088	1018	153428											
DYNC1I1	1780	broad.mit.edu	37	chr7	95442509	95442509	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacactgctcttcaccagtGcagccgctgcattttttaac	7	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95442509	T	T	95442509	2	4	191	1	0	0	0	0	0	0	0	1	4882	1333	46	3		3	DYNC1I1	7	95442509	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	526934	95442509	63696154	1019	153429											
DYNC1I1	1780	broad.mit.edu	37	chr7	95662087	95662087	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctggacatgctctcaactCcacaggtgggtttgtttttc	10	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95662087	T	T	95662087	3	4	191	1	0	0	0	0	1	0	0	0	4882	855	30	4	1318	4	DYNC1I1	7	95662087	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	219578	95662087	63476576	1020	153430											
DLX6	1750	broad.mit.edu	37	chr7	96639050	96639050	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgcttctaaatccctgagtGacgttagaggcactggtttg	11	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96639050	A	A	96639050	1	1	191	0	1	0	0	0	0	0	0	0	4615	1305	45	4		4	DLX6	7	96639050	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	976963	96639050	62499613	1021	153431											
ZKSCAN5	23660	broad.mit.edu	37	chr7	99117525	99117525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttcacttctctcaactgGgtcccaggtgagctggtgcc	11	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99117525	T	T	99117525	3	4	191	1	0	0	0	0	1	0	0	0	17816	1232	43	2	639	2	ZKSCAN5	7	99117525	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2478475	99117525	60021138	1022	153432											
ZNF498	221785	broad.mit.edu	37	chr7	99218978	99218978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcctcattctaatcggtGttgggaactgttcttaggtt	11	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99218978	T	T	99218978	1	4	191	0	1	0	0	0	0	0	0	0	18074	1392	48	3		3	ZNF498	7	99218978	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	101453	99218978	59919685	1023	153433											
OR2AE1	81392	broad.mit.edu	37	chr7	99474527	99474527	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagatgaggagaatggtgaGggtgttgccactcaccgcaa	15	8	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99474527	A	A	99474527	3	1	191	1	0	0	0	0	1	0	0	0	11077	1000	35	4	845	4	OR2AE1	7	99474527	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	255549	99474527	59664136	1024	153434											
GPC2	221914	broad.mit.edu	37	chr7	99768131	99768131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaagaagagggacagagCaggatgggagggagaagcag	20	3	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99768131	A	A	99768131	1	1	191	0	1	0	0	0	0	0	0	0	6663	725	25	3		3	GPC2	7	99768131	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	293604	99768131	59370532	1025	153435											
AGFG2	3268	broad.mit.edu	37	chr7	100151090	100151090	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgggtgatcctgcaccGtctctctcagttgctgcctc	9	15	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100151090	T	T	100151090	2	4	191	1	0	0	0	0	0	0	0	1	381	1132	40	3		3	AGFG2	7	100151090	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	382959	100151090	58987573	1026	153436											
AGFG2	3268	broad.mit.edu	37	chr7	100159952	100159952	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccaaacagcctcgcagaCgtgggcagcttcctgggacc	12	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100159952	T	T	100159952	2	4	191	1	0	0	0	0	0	0	0	1	381	535	19	4		4	AGFG2	7	100159952	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	8862	100159952	58978711	1027	153437											
LRCH4	4034	broad.mit.edu	37	chr7	100176407	100176407	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccagagggaggtcccccaGctctggaacaggtgggcaag	16	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100176407	A	A	100176407	2	1	191	1	0	0	0	0	0	0	0	1	9022	962	34	4		4	LRCH4	7	100176407	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	16455	100176407	58962256	1028	153438											
FBXO24	26261	broad.mit.edu	37	chr7	100184157	100184157	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaatcgtaagccagataCaggcgagtgactgtcaagaa	11	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100184157	A	A	100184157	1	1	191	0	1	0	0	0	0	0	0	0	5792	493	17	3		3	FBXO24	7	100184157	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	7750	100184157	58954506	1029	153439											
EPO	2056	broad.mit.edu	37	chr7	100320871	100320871	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcagctcagcgccagcctGtcccatggacactccagtgc	9	17	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100320871	T	T	100320871	1	4	191	0	1	0	0	0	0	0	0	0	5230	1392	48	3		3	EPO	7	100320871	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	136714	100320871	58817792	1030	153440											
ZAN	7455	broad.mit.edu	37	chr7	100359848	100359848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcccctagcacatactctGgcaaactctgtggtttgtgt	9	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100359848	T	T	100359848	3	4	191	1	0	0	0	0	1	0	0	0	17640	1348	47	2	3927	2	ZAN	7	100359848	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	38977	100359848	58778815	1031	153441											
ZAN	7455	broad.mit.edu	37	chr7	100383678	100383678	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtctgcacgggaggagcCattcagtgcggggacttccg	16	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100383678	T	T	100383678	2	4	191	1	0	0	0	0	0	0	0	1	17640	581	21	4		4	ZAN	7	100383678	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	23830	100383678	58754985	1032	153442											
MUC17	140453	broad.mit.edu	37	chr7	100678017	100678017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactccactaacaagtgtgcCtgtcagcaccaggctggtgg	11	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100678017	A	A	100678017	3	1	191	1	0	0	0	0	1	0	0	0	10068	681	24	2	3330	2	MUC17	7	100678017	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	294339	100678017	58460646	1033	153443											
FBXL13	222235	broad.mit.edu	37	chr7	102580103	102580103	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttctatggcaacacttaTatacagtaaattcagtttaa	4	6	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102580103	C	C	102580103	1	2	191	0	1	0	0	0	0	0	0	0	5766	1421	49	5		5	FBXL13	7	102580103	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1902086	102580103	56558560	1034	153444											
PMPCB	9512	broad.mit.edu	37	chr7	102939074	102939074	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgctacccaagttgttctGaatgttcctgaaacaagagt	9	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102939074	T	T	102939074	2	4	191	1	0	0	0	0	0	0	0	1	12236	1277	45	3		3	PMPCB	7	102939074	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	358971	102939074	56199589	1035	153445											
RELN	5649	broad.mit.edu	37	chr7	103130446	103130446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggactatttgtgagaaaAgggcttcccaaatgtcttcc	11	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103130446	G	G	103130446	1	3	191	0	1	0	0	0	0	0	0	0	13328	87	3	5		5	RELN	7	103130446	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	191372	103130446	56008217	1036	153446											
RELN	5649	broad.mit.edu	37	chr7	103163867	103163867	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggatgcatctcccatgGccactgcacatgtctatgca	8	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103163867	T	T	103163867	2	4	191	1	0	0	0	0	0	0	0	1	13328	1190	42	3		3	RELN	7	103163867	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	33421	103163867	55974796	1037	153447											
RELN	5649	broad.mit.edu	37	chr7	103244704	103244704	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcattatttatcggtctatCcatgtcactctgatgacaac	6	10	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103244704	A	A	103244704	1	1	191	0	1	0	0	0	0	0	0	0	13328	870	30	3		3	RELN	7	103244704	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	80837	103244704	55893959	1038	153448											
RELN	5649	broad.mit.edu	37	chr7	103368565	103368565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcacatacttaccagttctCgtgggccatatggttcacag	9	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103368565	A	A	103368565	3	1	191	1	0	0	0	0	1	0	0	0	13328	884	31	3	9872	3	RELN	7	103368565	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	123861	103368565	55770098	1039	153449											
ORC5L	5001	broad.mit.edu	37	chr7	103808891	103808891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagctgaagaagtatctcCggtaactgtctcaatacttc	7	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103808891	A	A	103808891	1	1	191	0	1	0	0	0	0	0	0	0	11359	661	23	1		1	ORC5L	7	103808891	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	440326	103808891	55329772	1040	153450											
LHFPL3	375612	broad.mit.edu	37	chr7	104308574	104308574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcagtgcagtgcgtttaCcacgtgaacccagcaatcca	8	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104308574	A	A	104308574	1	1	191	0	1	0	0	0	0	0	0	0	8838	522	18	3		3	LHFPL3	7	104308574	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	499683	104308574	54830089	1041	153451											
LHFPL3	375612	broad.mit.edu	37	chr7	104309188	104309188	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccccccaaagacccaaaCtgaatctaaagcctcggagt	6	17	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104309188	G	G	104309188	1	3	191	0	1	0	0	0	0	0	0	0	8838	580	20	4		4	LHFPL3	7	104309188	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	614	104309188	54829475	1042	153452											
SLC26A3	1811	broad.mit.edu	37	chr7	107414696	107414696	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaagcactgattctgagttGagccaaacgatgggattgga	13	6	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107414696	C	C	107414696	1	2	191	0	1	0	0	0	0	0	0	0	14632	1305	45	4		4	SLC26A3	7	107414696	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3105508	107414696	51723967	1043	153453											
LAMB1	3912	broad.mit.edu	37	chr7	107600843	107600843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttcatgtgccagatataCtcagagccagaaacagcagc	8	11	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107600843	A	A	107600843	1	1	191	0	1	0	0	0	0	0	0	0	8682	580	20	3		3	LAMB1	7	107600843	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	186147	107600843	51537820	1044	153454											
MET	4233	broad.mit.edu	37	chr7	116423428	116423428	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatgtatgataaagaatacTatagtgtacacaacaaaaca	5	6	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116423428	C	C	116423428	3	2	191	1	0	0	0	0	1	0	0	0	9578	1522	53	5	3827	5	MET	7	116423428	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	8822585	116423428	42715235	1045	153455											
CTTNBP2	83992	broad.mit.edu	37	chr7	117375213	117375213	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttatgttatgggacagattCaaattaaaataacgtaaaga	8	3	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117375213	T	T	117375213	1	4	191	0	1	0	0	0	0	0	0	0	4079	841	29	4		4	CTTNBP2	7	117375213	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	951785	117375213	41763450	1046	153456											
C7orf58	79974	broad.mit.edu	37	chr7	120876855	120876855	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagccattttacagtctgaaCtaaaaagatgtccatctggg	8	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120876855	G	G	120876855	3	3	191	1	0	0	0	0	1	0	0	0	2430	564	20	4	2205	4	C7orf58	7	120876855	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3501642	120876855	38261808	1047	153457											
C7orf58	79974	broad.mit.edu	37	chr7	120906183	120906183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtccttcaaacagttaGgtagtagtgtgaatattcaa	10	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120906183	T	T	120906183	1	4	191	0	1	0	0	0	0	0	0	0	2430	1015	35	2		2	C7orf58	7	120906183	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	29328	120906183	38232480	1048	153458											
PTPRZ1	5803	broad.mit.edu	37	chr7	121597092	121597092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtacggtcaccagtgcaCagttatcaaaaatgcgcaca	8	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121597092	A	A	121597092	1	1	191	0	1	0	0	0	0	0	0	0	12922	493	17	3		3	PTPRZ1	7	121597092	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	690909	121597092	37541571	1049	153459											
RNF133	168433	broad.mit.edu	37	chr7	122338680	122338680	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagtgcaagccaggtctctGagtactttgatcggctgaaa	11	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122338680	A	A	122338680	3	1	191	1	0	0	0	0	1	0	0	0	13550	1294	45	4	841	4	RNF133	7	122338680	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	741588	122338680	36799983	1050	153460											
IQUB	154865	broad.mit.edu	37	chr7	123092745	123092745	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgacctctgtattacCctattagcagtgaacaaaat	6	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123092745	A	A	123092745	1	1	191	0	1	0	0	0	0	0	0	0	7890	638	22	2		2	IQUB	7	123092745	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	754065	123092745	36045918	1051	153461											
HYAL4	23553	broad.mit.edu	37	chr7	123508347	123508347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgaaagtattatctgaagGacagttaaagctttgtgttg	10	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123508347	T	T	123508347	3	4	191	1	0	0	0	0	1	0	0	0	7536	1174	41	3	22	3	HYAL4	7	123508347	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	415602	123508347	35630316	1052	153462											
POT1	25913	broad.mit.edu	37	chr7	124480939	124480939	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttactttatatgtactagGttgtctgtaaaatgtattaa	6	3	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124480939	C	C	124480939	1	2	191	0	1	0	0	0	0	0	0	0	12355	1276	44	4		4	POT1	7	124480939	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	972592	124480939	34657724	1053	153463											
GRM8	2918	broad.mit.edu	37	chr7	126409874	126409874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atataggaggaaaaacacacCctgtcgcttttaatgtattt	7	7	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126409874	A	A	126409874	1	1	191	0	1	0	0	0	0	0	0	0	6869	638	22	2		2	GRM8	7	126409874	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1928935	126409874	32728789	1054	153464											
GRM8	2918	broad.mit.edu	37	chr7	126542587	126542587	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaccacaggaaacatttgAgtggttacctgtgcatttct	9	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126542587	T	T	126542587	1	4	191	0	1	0	0	0	0	0	0	0	6869	319	11	5		5	GRM8	7	126542587	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	132713	126542587	32596076	1055	153465											
FSCN3	29999	broad.mit.edu	37	chr7	127239547	127239547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctcatacagtgcaaccaGgatcagcccgaccgcattca	8	15	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127239547	T	T	127239547	3	4	191	1	0	0	0	0	1	0	0	0	6129	991	35	2	1251	2	FSCN3	7	127239547	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	696960	127239547	31899116	1056	153466											
PAX4	5078	broad.mit.edu	37	chr7	127251562	127251562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctccctacatcctgcaGgactgaggcctggcctgaat	10	15	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127251562	T	T	127251562	1	4	191	0	1	0	0	0	0	0	0	0	11575	1015	35	2		2	PAX4	7	127251562	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	12015	127251562	31887101	1057	153467											
IMPDH1	3614	broad.mit.edu	37	chr7	128034704	128034704	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttgaagctcagaggaccCcaccccacctcttaagggca	9	15	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128034704	T	T	128034704	1	4	191	0	1	0	0	0	0	0	0	0	7796	638	22	4		4	IMPDH1	7	128034704	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	783142	128034704	31103959	1058	153468											
METTL2B	55798	broad.mit.edu	37	chr7	128138196	128138196	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcttcggtttaaaaaaGgtattttgagagtgctgaat	10	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128138196	C	C	128138196	3	2	191	1	0	0	0	0	1	0	0	0	9593	1014	35	4	942	4	METTL2B	7	128138196	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	103492	128138196	31000467	1059	153469											
OPN1SW	611	broad.mit.edu	37	chr7	128414653	128414653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtataggactcgctgcGgtatttggtgcccacggtgt	13	11	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128414653	T	T	128414653	3	4	191	1	0	0	0	0	1	0	0	0	10974	1116	39	1	472	1	OPN1SW	7	128414653	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	276457	128414653	30724010	1060	153470											
NRF1	4899	broad.mit.edu	37	chr7	129317716	129317716	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaccccctaatccaggcatGggagtggggactagttttca	11	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129317716	A	A	129317716	1	1	191	0	1	0	0	0	0	0	0	0	10741	1363	47	4		4	NRF1	7	129317716	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	903063	129317716	29820947	1061	153471											
CPA5	93979	broad.mit.edu	37	chr7	130007240	130007240	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctaacagcaacccctgctCagaaacttatcacgggccct	6	15	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130007240	A	A	130007240	4	1	191	1	0	0	0	0	0	1	0	0	3825	838	29	3	900	3	CPA5	7	130007240	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	689524	130007240	29131423	1062	153472											
CPA1	1357	broad.mit.edu	37	chr7	130024348	130024348	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagcgtcacacgtgcctcGgggtggctgatcccatttcc	11	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130024348	T	T	130024348	1	4	191	0	1	0	0	0	0	0	0	0	3821	1131	39	1		1	CPA1	7	130024348	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	17108	130024348	29114315	1063	153473											
PLXNA4	91584	broad.mit.edu	37	chr7	131844474	131844474	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagcaccctgggattcCgtcctgaatggctcatcctc	9	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131844474	G	G	131844474	1	3	191	0	1	0	0	0	0	0	0	0	12217	667	23	4		4	PLXNA4	7	131844474	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1820126	131844474	27294189	1064	153474											
PLXNA4	91584	broad.mit.edu	37	chr7	131872127	131872127	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaacctgtcaggtggttAcaccctcccaactctctgca	8	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131872127	T	T	131872127	1	4	191	0	1	0	0	0	0	0	0	0	12217	406	14	5		5	PLXNA4	7	131872127	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	27653	131872127	27266536	1065	153475											
LRGUK	136332	broad.mit.edu	37	chr7	133827996	133827996	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaatagcactcaaatagaGaattcagagagaataagata	7	5	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133827996	T	T	133827996	1	4	191	0	1	0	0	0	0	0	0	0	9030	957	33	3		3	LRGUK	7	133827996	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1955869	133827996	25310667	1066	153476											
LRGUK	136332	broad.mit.edu	37	chr7	133884105	133884105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaaattgaatttgctgtctCcagagtggacctttatatta	8	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133884105	A	A	133884105	3	1	191	1	0	0	0	0	1	0	0	0	9030	855	30	3	1733	3	LRGUK	7	133884105	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	56109	133884105	25254558	1067	153477											
LRGUK	136332	broad.mit.edu	37	chr7	133948696	133948696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttccaacgtcaaacccaCcctccctccaatccctcagg	5	19	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133948696	A	A	133948696	3	1	191	1	0	0	0	0	1	0	0	0	9030	507	18	3	2525	3	LRGUK	7	133948696	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	64591	133948696	25189967	1068	153478											
AKR1B10	57016	broad.mit.edu	37	chr7	134221591	134221591	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaacattgcgggaggaatGttcaatgctatgccctgagt	11	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134221591	A	A	134221591	1	1	191	0	1	0	0	0	0	0	0	0	467	1392	48	4		4	AKR1B10	7	134221591	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	272895	134221591	24917072	1069	153479											
SLC13A4	26266	broad.mit.edu	37	chr7	135366290	135366290	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcagctcctgtggttgGgccagtttgtacacttggcg	14	10	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135366290	T	T	135366290	1	4	191	0	1	0	0	0	0	0	0	0	14507	1247	43	2		2	SLC13A4	7	135366290	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	1144699	135366290	23772373	1070	153480											
AKR1D1	6718	broad.mit.edu	37	chr7	137792391	137792391	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatttttgcttttatagaaTgtgttcagcttaataggaaa	7	4	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137792391	G	G	137792391	1	3	191	0	1	0	0	0	0	0	0	0	473	1479	51	5		5	AKR1D1	7	137792391	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2426101	137792391	21346272	1071	153481											
PRSS1	5644	broad.mit.edu	37	chr7	142457420	142457420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaaccacccccccgttcCtggccgacaaatgcccttcc	5	23	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142457420	A	A	142457420	1	1	191	0	1	0	0	0	0	0	0	0	12720	696	24	2		2	PRSS1	7	142457420	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4665029	142457420	16681243	1072	153482											
EPHB6	2051	broad.mit.edu	37	chr7	142564763	142564763	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtttccaggtgcgggccCggactgctgccggccacggc	16	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142564763	G	G	142564763	3	3	191	1	0	0	0	0	1	0	0	0	5220	643	23	4	1713	4	EPHB6	7	142564763	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	107343	142564763	16573900	1073	153483											
TRPV6	55503	broad.mit.edu	37	chr7	142569428	142569428	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacccaggaaaatgagagCaagttccaggaagcgaagtg	13	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142569428	A	A	142569428	1	1	191	0	1	0	0	0	0	0	0	0	16725	725	25	3		3	TRPV6	7	142569428	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	4665	142569428	16569235	1074	153484											
TRPV6	55503	broad.mit.edu	37	chr7	142571321	142571321	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaggcagcataggtgatGctgtacatgaagggcaggtc	15	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142571321	C	C	142571321	3	2	191	1	0	0	0	0	1	0	0	0	16725	1310	46	4	521	4	TRPV6	7	142571321	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1893	142571321	16567342	1075	153485											
KEL	3792	broad.mit.edu	37	chr7	142650745	142650745	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgccacccaccccacgcTtctctgcccgcacaggtggc	9	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142650745	A	A	142650745	1	1	191	0	1	0	0	0	0	0	0	0	8212	1624	56	5		5	KEL	7	142650745	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	79424	142650745	16487918	1076	153486											
CLCN1	1180	broad.mit.edu	37	chr7	143047529	143047529	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattcctgctgtattgaccAgtctcccttccagctggtgg	10	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143047529	T	T	143047529	3	4	191	1	0	0	0	0	1	0	0	0	3493	188	7	5	2550	5	CLCN1	7	143047529	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	396784	143047529	16091134	1077	153487											
CLCN1	1180	broad.mit.edu	37	chr7	143047730	143047730	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggggaagctcaggggcGtcctggccctggaggaggta	19	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143047730	T	T	143047730	3	4	191	1	0	0	0	0	1	0	0	0	3493	1145	40	3	2664	3	CLCN1	7	143047730	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	201	143047730	16090933	1078	153488											
FAM131B	9715	broad.mit.edu	37	chr7	143053713	143053713	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtgacgtcagacaccttcCggctgagagcggtagacatc	12	11	1	4	rs143238060	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143053713	G	G	143053713	3	3	191	1	0	0	0	0	1	0	0	0	5486	652	23	4	73	4	FAM131B	7	143053713	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5983	143053713	16084950	1079	153489											
ZYX	7791	broad.mit.edu	37	chr7	143078840	143078840	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgcgcacagatgggccGggtgggcgagattcccccgc	16	15	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143078840	T	T	143078840	3	4	191	1	0	0	0	0	1	0	0	0	18383	1116	39	1	178	1	ZYX	7	143078840	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	25127	143078840	16059823	1080	153490											
OR2A2	442361	broad.mit.edu	37	chr7	143807496	143807496	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagcaggagaaaatgctgtCcctgtttcacagtgtcttta	11	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143807496	A	A	143807496	3	1	191	1	0	0	0	0	1	0	0	0	11071	855	30	3	823	3	OR2A2	7	143807496	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	728656	143807496	15331167	1081	153491											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471330	146471330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcgaaatcgttgttgaGtgtctctctccctctctgtc	7	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146471330	T	T	146471330	1	4	191	0	1	0	0	0	0	0	0	0	3679	1044	36	3		3	CNTNAP2	7	146471330	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2663834	146471330	12667333	1082	153492											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092746	147092746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcactctgtccttcagcCttcattccaaggatgcatgc	7	13	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147092746	A	A	147092746	3	1	191	1	0	0	0	0	1	0	0	0	3679	681	24	2	1582	2	CNTNAP2	7	147092746	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	621416	147092746	12045917	1083	153493											
CNTNAP2	26047	broad.mit.edu	37	chr7	147092781	147092781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatgcagctcattcaagtgGacgatcaacttgtaaattta	8	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147092781	T	T	147092781	3	4	191	1	0	0	0	0	1	0	0	0	3679	1174	41	3	1617	3	CNTNAP2	7	147092781	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	35	147092781	12045882	1084	153494											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259350	147259350	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttactgcaacatgacagGtaactgtgtcatatttatgt	8	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147259350	T	T	147259350	5	4	191	1	0	0	0	0	0	0	1	0	3679	1275	44	3	1944	3	CNTNAP2	7	147259350	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	166569	147259350	11879313	1085	153495											
CNTNAP2	26047	broad.mit.edu	37	chr7	148080826	148080826	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagtccagttcaaccagatCgcccctctcaaggccgcctt	8	16	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148080826	A	A	148080826	2	1	191	1	0	0	0	0	0	0	0	1	3679	874	31	3		3	CNTNAP2	7	148080826	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	821476	148080826	11057837	1086	153496											
CNTNAP2	26047	broad.mit.edu	37	chr7	148112449	148112449	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctgtagtgaagtggggaCagtgttggagggactcccaa	17	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148112449	T	T	148112449	1	4	191	0	1	0	0	0	0	0	0	0	3679	493	17	4		4	CNTNAP2	7	148112449	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	31623	148112449	11026214	1087	153497											
SSPO	23145	broad.mit.edu	37	chr7	149509063	149509063	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctgtggccctgcccgGtgccatcggcaccggttctg	13	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149509063	A	A	149509063	2	1	191	1	0	0	0	0	0	0	0	1	15307	1248	44	4		4	SSPO	7	149509063	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1396614	149509063	9629600	1088	153498											
SSPO	23145	broad.mit.edu	37	chr7	149521636	149521636	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttggccccgctgctggcttCagagcagcaccgccaccggc	12	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149521636	T	T	149521636	3	4	191	1	0	0	0	0	1	0	0	0	15307	838	29	4	14087	4	SSPO	7	149521636	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	12573	149521636	9617027	1089	153499											
ABCB8	11194	broad.mit.edu	37	chr7	150742373	150742373	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcaggccctggatgccccGaggacagcggccccaccgcc	14	18	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150742373	T	T	150742373	2	4	191	1	0	0	0	0	0	0	0	1	47	1045	37	3		3	ABCB8	7	150742373	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1220737	150742373	8396290	1090	153500											
MLL3	58508	broad.mit.edu	37	chr7	151970887	151970887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcacaaggataatgataCatctgggtacatttctcttc	8	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151970887	A	A	151970887	3	1	191	1	0	0	0	0	1	0	0	0	9715	478	17	3	14032	3	MLL3	7	151970887	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1228514	151970887	7167776	1091	153501											
DPP6	1804	broad.mit.edu	37	chr7	154684122	154684122	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccatcatcaacttcttcGtggaatgcttcaggatccag	9	11	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154684122	T	T	154684122	3	4	191	1	0	0	0	0	1	0	0	0	4770	1145	40	3	2748	3	DPP6	7	154684122	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2713235	154684122	4454541	1092	153502											
DNAJB6	10049	broad.mit.edu	37	chr7	157151371	157151371	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtaatgcattttcacagtGgtacattggtaattgagtag	11	4	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157151371	C	C	157151371	1	2	191	0	1	0	0	0	0	0	0	0	4664	1363	47	4		4	DNAJB6	7	157151371	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2467249	157151371	1987292	1093	153503											
ESYT2	57488	broad.mit.edu	37	chr7	158534156	158534156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaacgactctcccccagCgtggggtggggggcgcttgc	16	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158534156	A	A	158534156	1	1	191	0	1	0	0	0	0	0	0	0	5307	783	27	3		3	ESYT2	7	158534156	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1382785	158534156	604507	1094	153504											
ARHGEF10	9639	broad.mit.edu	37	chr8	1828334	1828334	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagcatgaactgaaggtaGagtcttgcccccggccgctg	13	11	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1828334	A	A	1828334	1	1	191	0	1	0	0	0	0	0	0	0	896	957	33	4		4	ARHGEF10	8	1828334	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08		1828334	144535688	1095	153505											
MYOM2	9172	broad.mit.edu	37	chr8	2044234	2044234	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttcaccataaaaactggcAcgaggtcaattcctcaccca	6	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2044234	T	T	2044234	3	4	191	1	0	0	0	0	1	0	0	0	10186	159	6	5	2339	5	MYOM2	8	2044234	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	215900	2044234	144319788	1096	153506											
MYOM2	9172	broad.mit.edu	37	chr8	2056737	2056737	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaggatggcctgatttcctGatcccagcttacaggattga	10	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2056737	A	A	2056737	1	1	191	0	1	0	0	0	0	0	0	0	10186	1305	45	4		4	MYOM2	8	2056737	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	12503	2056737	144307285	1097	153507											
CSMD1	64478	broad.mit.edu	37	chr8	2944759	2944759	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccgctcctgcagtcctgTttagaatacccccattcttc	5	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2944759	C	C	2944759	3	2	191	1	0	0	0	0	1	0	0	0	3978	1725	60	5	3448	5	CSMD1	8	2944759	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	888022	2944759	143419263	1098	153508											
RP1L1	94137	broad.mit.edu	37	chr8	10469147	10469147	+	Frame_Shift_Del	DEL	G	-	-													tgagcagcagtggcttcggtGggggcccaccgccccttgct							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10469147	-	-	10469147	7	5	191	1	0	1	0	1	0	0	0	0	13644	1348	47	0	4745	0	RP1L1	8	10469147	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	7524388	10469147	135894875	1099	153509											
C8orf74	203076	broad.mit.edu	37	chr8	10555378	10555378	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acgagcagcaggtggccacaCtgacggaggccgaggcacag	16	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10555378	G	G	10555378	3	3	191	1	0	0	0	0	1	0	0	0	2462	564	20	4	521	4	C8orf74	8	10555378	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	86231	10555378	135808644	1100	153510											
C8orf79	57604	broad.mit.edu	37	chr8	12878740	12878740	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaggcagtgtggatacccAgaaagaggccatccctacca	11	11	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12878740	C	C	12878740	2	2	191	1	0	0	0	0	0	0	0	1	2464	175	7	5		5	C8orf79	8	12878740	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	2323362	12878740	133485282	1101	153511											
DLC1	10395	broad.mit.edu	37	chr8	13357316	13357316	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttcaccttcatggctgtCattttcgtccacatcctttg	5	13	4	0	rs150090193		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13357316	A	A	13357316	3	1	191	1	0	0	0	0	1	0	0	0	4590	826	29	3	4474	3	DLC1	8	13357316	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	478576	13357316	133006706	1102	153512											
PSD3	23362	broad.mit.edu	37	chr8	18793370	18793370	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccaagaataggccacaagAattacatgaaatatttgcgg	8	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18793370	G	G	18793370	1	3	191	0	1	0	0	0	0	0	0	0	12754	261	9	5		5	PSD3	8	18793370	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	5436054	18793370	127570652	1103	153513											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19297446	19297446	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcaatgcacatctccctgGaaaacaaaacacatgcatgt	6	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19297446	A	A	19297446	1	1	191	0	1	0	0	0	0	0	0	0	3972	1189	41	4		4	CSGALNACT1	8	19297446	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	504076	19297446	127066576	1104	153514											
INTS10	55174	broad.mit.edu	37	chr8	19700505	19700505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattctcatgactcgagaaCttgagaaccttgctaaggat	8	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19700505	A	A	19700505	1	1	191	0	1	0	0	0	0	0	0	0	7846	580	20	3		3	INTS10	8	19700505	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	403059	19700505	126663517	1105	153515											
BMP1	649	broad.mit.edu	37	chr8	22065020	22065020	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagggcttccaggcctccCacgccacaggtactgtcccc	10	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22065020	T	T	22065020	3	4	191	1	0	0	0	0	1	0	0	0	1462	594	21	4	2726	4	BMP1	8	22065020	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2364515	22065020	124299002	1106	153516											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24255027	24255027	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcagcaaagataggcaAtatactactattcttagaaa	6	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24255027	G	G	24255027	1	3	191	0	1	0	0	0	0	0	0	0	254	116	4	5		5	ADAMDEC1	8	24255027	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	2190007	24255027	122108995	1107	153517											
NEFM	4741	broad.mit.edu	37	chr8	24774647	24774647	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccactgtatacacacCgacccccaatcacaatatcc	5	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24774647	T	T	24774647	4	4	191	1	0	0	0	0	0	1	0	0	10411	644	23	4	1289	4	NEFM	8	24774647	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	519620	24774647	121589375	1108	153518											
KCTD9	54793	broad.mit.edu	37	chr8	25315782	25315782	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgcgctgcccccgctgggtCctgagtgagccgccaccctc	12	19	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25315782	A	A	25315782	1	1	191	0	1	0	0	0	0	0	0	0	8186	870	30	3		3	KCTD9	8	25315782	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	541135	25315782	121048240	1109	153519											
EBF2	64641	broad.mit.edu	37	chr8	25715978	25715978	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgaggcgtggagctggaaGagtatccccgcggagagatg	18	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25715978	C	C	25715978	3	2	191	1	0	0	0	0	1	0	0	0	4921	942	33	4	354	4	EBF2	8	25715978	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	400196	25715978	120648044	1110	153520											
SCARA5	286133	broad.mit.edu	37	chr8	27824142	27824142	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttttggtctcatctctcCctgatgcatgcagatgttca	7	11	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27824142	G	G	27824142	1	3	191	0	1	0	0	0	0	0	0	0	13992	638	22	4		4	SCARA5	8	27824142	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2108164	27824142	118539880	1111	153521											
FZD3	7976	broad.mit.edu	37	chr8	28360629	28360629	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttgtgaacctattaccttGaggatgtgccaagatttgcc	9	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28360629	T	T	28360629	3	4	191	1	0	0	0	0	1	0	0	0	6191	1281	45	3	101	3	FZD3	8	28360629	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	536487	28360629	118003393	1112	153522											
NRG1	3084	broad.mit.edu	37	chr8	32585597	32585597	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgagatacttgtgcaaGtaagaaaagaaatcctgtgt	9	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32585597	A	A	32585597	5	1	191	1	0	0	0	0	0	0	1	0	10742	1043	36	4	2121	4	NRG1	8	32585597	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	4224968	32585597	113778425	1113	153523											
NRG1	3084	broad.mit.edu	37	chr8	32617782	32617782	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaatcgtgatgtcatccGtagaaaacagtaggcacagc	10	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32617782	A	A	32617782	3	1	191	1	0	0	0	0	1	0	0	0	10742	1145	40	4	2764	4	NRG1	8	32617782	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	32185	32617782	113746240	1114	153524											
DUSP26	78986	broad.mit.edu	37	chr8	33451050	33451050	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagcattcccctcctaCctcctggctggctcagcgcc	7	21	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33451050	A	A	33451050	5	1	191	1	0	0	0	0	0	0	1	0	4863	521	18	3	206	3	DUSP26	8	33451050	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	833268	33451050	112912972	1115	153525											
KCNU1	157855	broad.mit.edu	37	chr8	36767015	36767015	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actatctacagagagaatggCgatttctctggaattttccc	8	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36767015	G	G	36767015	3	3	191	1	0	0	0	0	1	0	0	0	8163	760	27	4	2375	4	KCNU1	8	36767015	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3315965	36767015	109597007	1116	153526											
GOT1L1	137362	broad.mit.edu	37	chr8	37793322	37793322	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctaatccttccagctGggagaggacacacagcagct	12	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37793322	C	C	37793322	3	2	191	1	0	0	0	0	1	0	0	0	6644	1357	47	4	448	4	GOT1L1	8	37793322	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1026307	37793322	108570700	1117	153527											
ADAM9	8754	broad.mit.edu	37	chr8	38912024	38912024	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgaattggacccttgctgcGaaggaagtacctgtaagctt	12	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38912024	T	T	38912024	4	4	191	1	0	0	0	0	0	1	0	0	253	1059	37	3	1377	3	ADAM9	8	38912024	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1118702	38912024	107451998	1118	153528											
ZMAT4	79698	broad.mit.edu	37	chr8	40438800	40438800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtggacaacagacagacCtggttagctgcatccagtcg	11	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40438800	A	A	40438800	1	1	191	0	1	0	0	0	0	0	0	0	17820	696	24	2		2	ZMAT4	8	40438800	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1526776	40438800	105925222	1119	153529											
ANK1	286	broad.mit.edu	37	chr8	41577265	41577265	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcagccacgtggagtgGggtcaggtggtccagggtga	21	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41577265	T	T	41577265	3	4	191	1	0	0	0	0	1	0	0	0	620	1232	43	2	5110	2	ANK1	8	41577265	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1138465	41577265	104786757	1120	153530											
MYST3	7994	broad.mit.edu	37	chr8	41800537	41800537	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctggaaccagagaaaagtTtatagcaatcaacaatgtac	7	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41800537	C	C	41800537	1	2	191	0	1	0	0	0	0	0	0	0	10198	1856	64	5		5	MYST3	8	41800537	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	223272	41800537	104563485	1121	153531											
POTEA	340441	broad.mit.edu	37	chr8	43211911	43211911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgatgcagattctgctaGcctatcaaaaatccaggatg	8	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43211911	T	T	43211911	3	4	191	1	0	0	0	0	1	0	0	0	12356	971	34	3	1416	3	POTEA	8	43211911	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1411374	43211911	103152111	1122	153532											
PRKDC	5591	broad.mit.edu	37	chr8	48790466	48790466	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgggttttacttttgcttCaatagttaaattatatacta	6	4	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48790466	T	T	48790466	1	4	191	0	1	0	0	0	0	0	0	0	12627	841	29	4		4	PRKDC	8	48790466	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	5578555	48790466	97573556	1123	153533											
SNTG1	54212	broad.mit.edu	37	chr8	51569693	51569693	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatttttaaaaaataataTagagaaaaagtagaaatcag	5	1	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51569693	A	A	51569693	1	1	191	0	1	0	0	0	0	0	0	0	14988	1421	49	5		5	SNTG1	8	51569693	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2779227	51569693	94794329	1124	153534											
SNTG1	54212	broad.mit.edu	37	chr8	51621488	51621488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaaagtcatctaatgggaCtcacaattgatttcagcaca	7	8	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51621488	A	A	51621488	3	1	191	1	0	0	0	0	1	0	0	0	14988	565	20	3	1292	3	SNTG1	8	51621488	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	51795	51621488	94742534	1125	153535											
ST18	9705	broad.mit.edu	37	chr8	53079446	53079446	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcactttgtgggggcacccCgaaaggctgcggtggtgcgg	18	11	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53079446	T	T	53079446	2	4	191	1	0	0	0	0	0	0	0	1	15330	639	23	4		4	ST18	8	53079446	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1457958	53079446	93284576	1126	153536											
ATP6V1H	51606	broad.mit.edu	37	chr8	54714394	54714394	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttccacccaagcaaagcgGtactcattgacccggagcat	9	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54714394	C	C	54714394	4	2	191	1	0	0	0	0	0	1	0	0	1193	1256	44	4	837	4	ATP6V1H	8	54714394	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1634948	54714394	91649628	1127	153537											
LYPLA1	10434	broad.mit.edu	37	chr8	54978393	54978393	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtggaaaaatcattgaAtaatgctattagacactgtt	8	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54978393	C	C	54978393	1	2	191	0	1	0	0	0	0	0	0	0	9204	116	4	5		5	LYPLA1	8	54978393	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	263999	54978393	91385629	1128	153538											
RP1	6101	broad.mit.edu	37	chr8	55542122	55542122	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccaaccattgcctggcAgtaatatgattcatggtaca	7	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55542122	G	G	55542122	3	3	191	1	0	0	0	0	1	0	0	0	13643	188	7	5	5690	5	RP1	8	55542122	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	563729	55542122	90821900	1129	153539											
XKR4	114786	broad.mit.edu	37	chr8	56436481	56436481	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagcaccctacggtccatcTccaacaaccgcagtgttgtc	7	16	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56436481	A	A	56436481	3	1	191	1	0	0	0	0	1	0	0	0	17560	1551	54	5	1658	5	XKR4	8	56436481	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	894359	56436481	89927541	1130	153540											
TGS1	96764	broad.mit.edu	37	chr8	56723451	56723451	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacttttagtgattgccattGatatcgatcctgttaagatt	7	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56723451	A	A	56723451	3	1	191	1	0	0	0	0	1	0	0	0	15960	1290	45	4	2197	4	TGS1	8	56723451	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	286970	56723451	89640571	1131	153541											
NKAIN3	286183	broad.mit.edu	37	chr8	63769231	63769231	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcacttcactgagtgagtCatcagatctgtggcccatca	9	12	5	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63769231	A	A	63769231	1	1	191	0	1	0	0	0	0	0	0	0	10532	841	29	3		3	NKAIN3	8	63769231	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	7045780	63769231	82594791	1132	153542											
C8orf46	254778	broad.mit.edu	37	chr8	67408724	67408724	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcagcacctcttgaccaaGaatgtaaggaaactttagtt	7	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67408724	T	T	67408724	3	4	191	1	0	0	0	0	1	0	0	0	2457	933	33	3	129	3	C8orf46	8	67408724	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3639493	67408724	78955298	1133	153543											
SGK3	23678	broad.mit.edu	37	chr8	67755904	67755904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagagcagtaatagtctgGttaaatgaacccaaacccac	7	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67755904	T	T	67755904	1	4	191	0	1	0	0	0	0	0	0	0	14325	1276	44	3		3	SGK3	8	67755904	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	347180	67755904	78608118	1134	153544											
PREX2	80243	broad.mit.edu	37	chr8	69017251	69017251	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcagattaatgagttcaGtgtttcctttgatgttgcta	9	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69017251	T	T	69017251	1	4	191	0	1	0	0	0	0	0	0	0	12583	1044	36	3		3	PREX2	8	69017251	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1261347	69017251	77346771	1135	153545											
C8orf34	116328	broad.mit.edu	37	chr8	69730552	69730552	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccttatgtatagttctaaTtttatttactatgtgtaatc	4	5	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69730552	C	C	69730552	1	2	191	0	1	0	0	0	0	0	0	0	2448	1508	52	5		5	C8orf34	8	69730552	3'UTR	SNP	T	TCGA-64-5781-01A-01D-1625-08	713301	69730552	76633470	1136	153546											
PRDM14	63978	broad.mit.edu	37	chr8	70980625	70980625	+	Intron	DEL	A	-	-													tctgcatgaggcatagacctAggggaaagccgaggcaggaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70980625	-	-	70980625	6	5	191	0	1	1	0	1	0	0	0	0	12561	435	15	0		0	PRDM14	8	70980625	Intron	DEL	A	TCGA-64-5781-01A-01D-1625-08	1250073	70980625	75383397	1137	153547											
TRPA1	8989	broad.mit.edu	37	chr8	72966087	72966087	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacgcatgatgcaaagctgtCcagccattgtggtcactggt	12	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72966087	A	A	72966087	3	1	191	1	0	0	0	0	1	0	0	0	16702	856	30	3	1874	3	TRPA1	8	72966087	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1985462	72966087	73397935	1138	153548											
TRPA1	8989	broad.mit.edu	37	chr8	72967971	72967971	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcttttggaatgaatGgacacattaaagccaagtag	9	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72967971	A	A	72967971	2	1	191	1	0	0	0	0	0	0	0	1	16702	1335	47	4		4	TRPA1	8	72967971	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1884	72967971	73396051	1139	153549											
TRPA1	8989	broad.mit.edu	37	chr8	72975657	72975657	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatagcatccaccaaaataGacttatttatagtatataac	3	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72975657	C	C	72975657	1	2	191	0	1	0	0	0	0	0	0	0	16702	957	33	4		4	TRPA1	8	72975657	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	7686	72975657	73388365	1140	153550											
RDH10	157506	broad.mit.edu	37	chr8	74235397	74235397	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttttttaaatcaacttTttaaaaaaataaagtgtaaa	2	3	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74235397	C	C	74235397	1	2	191	0	1	0	0	0	0	0	0	0	13297	1856	64	5		5	RDH10	8	74235397	3'UTR	SNP	T	TCGA-64-5781-01A-01D-1625-08	1259740	74235397	72128625	1141	153551											
CRISPLD1	83690	broad.mit.edu	37	chr8	75898355	75898355	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatacatggatgaggatggtGagtggtggatagccaaacaa	14	4	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75898355	T	T	75898355	4	4	191	1	0	0	0	0	0	1	0	0	3914	1291	45	3	135	3	CRISPLD1	8	75898355	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1662958	75898355	70465667	1142	153552											
ZFHX4	79776	broad.mit.edu	37	chr8	77617295	77617295	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtctccgccataatacagggGattggcaaagacaaagaacc	10	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77617295	T	T	77617295	2	4	191	1	0	0	0	0	0	0	0	1	17761	1161	41	3		3	ZFHX4	8	77617295	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1718940	77617295	68746727	1143	153553											
ZFHX4	79776	broad.mit.edu	37	chr8	77618422	77618422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggctataaacccttccGttgtgaggtttgtaactact	10	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77618422	T	T	77618422	3	4	191	1	0	0	0	0	1	0	0	0	17761	1145	40	3	2101	3	ZFHX4	8	77618422	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1127	77618422	68745600	1144	153554											
ZFHX4	79776	broad.mit.edu	37	chr8	77764421	77764421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcttggggccagatttggGcttgccaggctctgccacat	13	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77764421	T	T	77764421	3	4	191	1	0	0	0	0	1	0	0	0	17761	1203	42	3	5298	3	ZFHX4	8	77764421	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	145999	77764421	68599601	1145	153555											
ZFHX4	79776	broad.mit.edu	37	chr8	77767836	77767836	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatcacagatgacccggaTgacaacgccgaccgcagcga	10	14	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77767836	A	A	77767836	3	1	191	1	0	0	0	0	1	0	0	0	17761	1461	51	5	8713	5	ZFHX4	8	77767836	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	3415	77767836	68596186	1146	153556											
CA13	377677	broad.mit.edu	37	chr8	86158162	86158162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggactagcgcgacgccccgGcgctcgctgaccacacactg	12	17	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86158162	T	T	86158162	1	4	191	0	1	0	0	0	0	0	0	0	2540	1218	42	3		3	CA13	8	86158162	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	8390326	86158162	60205860	1147	153557											
CA13	377677	broad.mit.edu	37	chr8	86163132	86163132	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaacagcggccattccttCaatgttgactttgatgacac	8	11	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86163132	T	T	86163132	2	4	191	1	0	0	0	0	0	0	0	1	2540	825	29	4		4	CA13	8	86163132	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	4970	86163132	60200890	1148	153558											
WWP1	11059	broad.mit.edu	37	chr8	87448011	87448011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaagtcagggttttagAgatttttaaaccacccagaa	8	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87448011	T	T	87448011	1	4	191	0	1	0	0	0	0	0	0	0	17542	319	11	5		5	WWP1	8	87448011	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1284879	87448011	58916011	1149	153559											
MMP16	4325	broad.mit.edu	37	chr8	89068353	89068353	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcatgagaagtgtatactGacctgtctcccttgaagaaa	8	9	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89068353	T	T	89068353	1	4	191	0	1	0	0	0	0	0	0	0	9748	1305	45	3		3	MMP16	8	89068353	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1620342	89068353	57295669	1150	153560											
MMP16	4325	broad.mit.edu	37	chr8	89128827	89128827	+	Frame_Shift_Del	DEL	C	-	-													ctccgggataggagggtctgCcggttggaggccgaggaggt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89128827	-	-	89128827	7	5	191	1	0	1	0	1	0	0	0	0	9748	739	26	0	1007	0	MMP16	8	89128827	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	60474	89128827	57235195	1151	153561											
MMP16	4325	broad.mit.edu	37	chr8	89339260	89339260	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaaatgtttcagggagCagcccaggcagcggggggag	19	7	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89339260	T	T	89339260	1	4	191	0	1	0	0	0	0	0	0	0	9748	725	25	4		4	MMP16	8	89339260	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	210433	89339260	57024762	1152	153562											
CDH17	1015	broad.mit.edu	37	chr8	95201473	95201473	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaatgtcatgggtttcAggggtccactaaacttcccc	9	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95201473	T	T	95201473	3	4	191	1	0	0	0	0	1	0	0	0	3132	188	7	5	2470	5	CDH17	8	95201473	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	5862213	95201473	51162549	1153	153563											
INTS8	55656	broad.mit.edu	37	chr8	95862156	95862156	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatctaggaatgtgtgtctGgggttggaagatctgcagta	15	4	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95862156	C	C	95862156	2	2	191	1	0	0	0	0	0	0	0	1	7854	1335	47	4		4	INTS8	8	95862156	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	660683	95862156	50501866	1154	153564											
UQCRB	7381	broad.mit.edu	37	chr8	97247745	97247745	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccagttacttaccggccTgcttaccagccattttgacc	6	17	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97247745	C	C	97247745	3	2	191	1	0	0	0	0	1	0	0	0	17144	1580	55	5	337	5	UQCRB	8	97247745	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1385589	97247745	49116277	1155	153565											
TSPYL5	85453	broad.mit.edu	37	chr8	98288962	98288962	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggattgggccacaattcttCgttgattatctccacaatct	8	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98288962	G	G	98288962	3	3	191	1	0	0	0	0	1	0	0	0	16787	893	31	4	146	4	TSPYL5	8	98288962	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1041217	98288962	48075060	1156	153566											
MATN2	4147	broad.mit.edu	37	chr8	98943174	98943174	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtatttgacctctcctcttTccccagagagttcctgtgag	8	12	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98943174	A	A	98943174	1	1	191	0	1	0	0	0	0	0	0	0	9426	1798	62	5		5	MATN2	8	98943174	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	654212	98943174	47420848	1157	153567											
MATN2	4147	broad.mit.edu	37	chr8	98954084	98954084	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcatacgtctgcaggtgCaaacaaggctacattctcaa	9	11	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98954084	T	T	98954084	2	4	191	1	0	0	0	0	0	0	0	1	9426	718	25	4		4	MATN2	8	98954084	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	10910	98954084	47409938	1158	153568											
VPS13B	157680	broad.mit.edu	37	chr8	100454878	100454878	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaggtatatgttaacatTtttttcctatggttaatgtt	7	3	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100454878	A	A	100454878	1	1	191	0	1	0	0	0	0	0	0	0	17317	1856	64	5		5	VPS13B	8	100454878	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1500794	100454878	45909144	1159	153569											
SNX31	169166	broad.mit.edu	37	chr8	101589249	101589249	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataattttactcacagacctGgctttgttgaatgtggtatt	8	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101589249	A	A	101589249	4	1	191	1	0	0	0	0	0	1	0	0	15015	1357	47	4	105	4	SNX31	8	101589249	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1134371	101589249	44774773	1160	153570											
UBR5	51366	broad.mit.edu	37	chr8	103291194	103291194	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaacagaaatattctagTtacattgaatactttaaaga	4	4	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103291194	A	A	103291194	1	1	191	0	1	0	0	0	0	0	0	0	17031	1740	60	5		5	UBR5	8	103291194	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1701945	103291194	43072828	1161	153571											
UBR5	51366	broad.mit.edu	37	chr8	103306085	103306085	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaagttgctagaacaaaaaGagaaatatcagcaatctatc	6	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103306085	C	C	103306085	1	2	191	0	1	0	0	0	0	0	0	0	17031	957	33	4		4	UBR5	8	103306085	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	14891	103306085	43057937	1162	153572											
UBR5	51366	broad.mit.edu	37	chr8	103354694	103354694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagtgtgaattttttcCaaataccttatcaggccacc	7	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103354694	A	A	103354694	1	1	191	0	1	0	0	0	0	0	0	0	17031	609	21	2		2	UBR5	8	103354694	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	48609	103354694	43009328	1163	153573											
RIMS2	9699	broad.mit.edu	37	chr8	104581201	104581201	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcttacagctgcatgagCtgatcaccgtgttcctatcg	10	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104581201	G	G	104581201	1	3	191	0	1	0	0	0	0	0	0	0	13479	812	28	4		4	RIMS2	8	104581201	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1226507	104581201	41782821	1164	153574											
RIMS2	9699	broad.mit.edu	37	chr8	104898239	104898239	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtaagaaaaacaaaacGggaaaaaatggaaacaatgt	9	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104898239	C	C	104898239	3	2	191	1	0	0	0	0	1	0	0	0	13479	1116	39	4	1552	4	RIMS2	8	104898239	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	317038	104898239	41465783	1165	153575											
RIMS2	9699	broad.mit.edu	37	chr8	104973126	104973126	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcctcacgtcatgaaatGcatgtgaaaataaatgacaa	6	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104973126	T	T	104973126	1	4	191	0	1	0	0	0	0	0	0	0	13479	1334	46	3		3	RIMS2	8	104973126	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	74887	104973126	41390896	1166	153576											
RIMS2	9699	broad.mit.edu	37	chr8	105001583	105001583	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcactatgaccggacattAtaatacaattagccgaatgg	8	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105001583	G	G	105001583	3	3	191	1	0	0	0	0	1	0	0	0	13479	449	16	5	3170	5	RIMS2	8	105001583	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	28457	105001583	41362439	1167	153577											
TM7SF4	81501	broad.mit.edu	37	chr8	105361010	105361010	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgtgttgctccaagcAtgcacgatgttttattcttc	8	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105361010	C	C	105361010	3	2	191	1	0	0	0	0	1	0	0	0	16099	217	8	5	232	5	TM7SF4	8	105361010	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	359427	105361010	41003012	1168	153578											
TM7SF4	81501	broad.mit.edu	37	chr8	105367361	105367361	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagctgcttaaaaaaagatCaaagcagccgctgggagaag	11	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105367361	G	G	105367361	4	3	191	1	0	0	0	0	0	1	0	0	16099	838	29	4	1292	4	TM7SF4	8	105367361	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6351	105367361	40996661	1169	153579											
DPYS	1807	broad.mit.edu	37	chr8	105440265	105440265	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaccattcaccccattgggGatcttggtaaaatcatcctt	6	12	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105440265	T	T	105440265	2	4	191	1	0	0	0	0	0	0	0	1	4786	1164	41	3		3	DPYS	8	105440265	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	72904	105440265	40923757	1170	153580											
ANGPT1	284	broad.mit.edu	37	chr8	108315513	108315513	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atataaatagtgtagattccActtttattaaaaccagcttg	5	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108315513	T	T	108315513	3	4	191	1	0	0	0	0	1	0	0	0	610	156	6	5	625	5	ANGPT1	8	108315513	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2875248	108315513	38048509	1171	153581											
TMEM74	157753	broad.mit.edu	37	chr8	109796454	109796454	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctctaccaaggacagttCcagagtgttttcattcgtgc	8	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109796454	A	A	109796454	4	1	191	1	0	0	0	0	0	1	0	0	16325	864	30	3	47	3	TMEM74	8	109796454	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1480941	109796454	36567568	1172	153582											
PKHD1L1	93035	broad.mit.edu	37	chr8	110401423	110401423	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcataatgctcacagatgccTtattctatttccctgttttg	5	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110401423	A	A	110401423	1	1	191	0	1	0	0	0	0	0	0	0	12067	1624	56	5		5	PKHD1L1	8	110401423	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	604969	110401423	35962599	1173	153583											
PKHD1L1	93035	broad.mit.edu	37	chr8	110478983	110478983	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcttgaaaaggatgtggttCtttcagactcttttggtaag	11	5	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110478983	A	A	110478983	3	1	191	1	0	0	0	0	1	0	0	0	12067	913	32	3	8788	3	PKHD1L1	8	110478983	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	77560	110478983	35885039	1174	153584											
PKHD1L1	93035	broad.mit.edu	37	chr8	110482703	110482703	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggttaaagcccagatagCgctagaggaagcatcacagc	11	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110482703	A	A	110482703	1	1	191	0	1	0	0	0	0	0	0	0	12067	783	27	3		3	PKHD1L1	8	110482703	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3720	110482703	35881319	1175	153585											
CSMD3	114788	broad.mit.edu	37	chr8	113317142	113317142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgatgcttggacatgtaaCaactatacaaaaaccaaagg	7	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113317142	A	A	113317142	3	1	191	1	0	0	0	0	1	0	0	0	3980	478	17	3	3129	3	CSMD3	8	113317142	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2834439	113317142	33046880	1176	153586											
CSMD3	114788	broad.mit.edu	37	chr8	113353818	113353818	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatttgaggaccactaagCcggccaataacagtactagt	10	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113353818	A	A	113353818	2	1	191	1	0	0	0	0	0	0	0	1	3980	726	26	3		3	CSMD3	8	113353818	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	36676	113353818	33010204	1177	153587											
CSMD3	114788	broad.mit.edu	37	chr8	113392565	113392565	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaacctttttgaatggcacAtgatattatttttacctgtg	6	6	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113392565	T	T	113392565	1	4	191	0	1	0	0	0	0	0	0	0	3980	232	8	5		5	CSMD3	8	113392565	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	38747	113392565	32971457	1178	153588											
UTP23	84294	broad.mit.edu	37	chr8	117783872	117783872	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtatcaaacatctcaaagagGaacagggtttagtgaaaaac	9	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117783872	T	T	117783872	4	4	191	1	0	0	0	0	0	1	0	0	17227	1175	41	3	551	3	UTP23	8	117783872	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4391307	117783872	28580150	1179	153589											
ENPP2	5168	broad.mit.edu	37	chr8	120612922	120612922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctaaaccactaacctcaGggccgaaagggccatatttg	9	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120612922	T	T	120612922	3	4	191	1	0	0	0	0	1	0	0	0	5172	1000	35	2	1922	2	ENPP2	8	120612922	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2829050	120612922	25751100	1180	153590											
ATAD2	29028	broad.mit.edu	37	chr8	124333437	124333437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagataaaggggaggaagagCaaatagtaagtttcaatatg	12	2	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124333437	A	A	124333437	1	1	191	0	1	0	0	0	0	0	0	0	1075	725	25	3		3	ATAD2	8	124333437	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3720515	124333437	22030585	1181	153591											
FER1L6	654463	broad.mit.edu	37	chr8	125047670	125047670	+	Frame_Shift_Del	DEL	C	-	-													aaaggggctggcaccaatcaCcccccatctaacctgctcta							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125047670	-	-	125047670	7	5	191	1	0	1	0	1	0	0	0	0	5872	506	18	0	2509	0	FER1L6	8	125047670	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	714233	125047670	21316352	1182	153592											
FER1L6	654463	broad.mit.edu	37	chr8	125131753	125131753	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggctctccctatgggtcctCagaaagtgggagtcggaaac	14	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125131753	G	G	125131753	1	3	191	0	1	0	0	0	0	0	0	0	5872	841	29	4		4	FER1L6	8	125131753	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	84083	125131753	21232269	1183	153593											
MTSS1	9788	broad.mit.edu	37	chr8	125601806	125601806	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggcagcagctggcaaCttcccacagcgccccccagc	11	19	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125601806	A	A	125601806	1	1	191	0	1	0	0	0	0	0	0	0	10056	580	20	3		3	MTSS1	8	125601806	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	470053	125601806	20762216	1184	153594											
ZNF572	137209	broad.mit.edu	37	chr8	125988958	125988958	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagttctcatttgcgtactCaccagaggacccactcagga	8	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125988958	T	T	125988958	3	4	191	1	0	0	0	0	1	0	0	0	18131	826	29	4	454	4	ZNF572	8	125988958	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	387152	125988958	20375064	1185	153595											
ADCY8	114	broad.mit.edu	37	chr8	131826547	131826547	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcaggcacagacaactggGaggcaggaaaggcttctctg	13	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131826547	A	A	131826547	1	1	191	0	1	0	0	0	0	0	0	0	300	1189	41	4		4	ADCY8	8	131826547	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	5837589	131826547	14537475	1186	153596											
KCNQ3	3786	broad.mit.edu	37	chr8	133192464	133192464	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgccacctctccggtccatCcgcagcatgcgcaggatctg	11	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133192464	A	A	133192464	2	1	191	1	0	0	0	0	0	0	0	1	8154	842	30	3		3	KCNQ3	8	133192464	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1365917	133192464	13171558	1187	153597											
TG	7038	broad.mit.edu	37	chr8	133881998	133881999	+	Missense_Mutation	DNP	CC	AG	AG													gtccagtgccagaacgacggCcgctcctgctggtgtgtggg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	133881999	AG	AG	133881998	3	1	191	1	0	0	0	0	1	0	0	0	15936	726	26	3	211	3	TG	8	133881998	Missense_Mutation	DNP	CC	TCGA-64-5781-01A-01D-1625-08	689534	133881998	12482024	1188	153598											
TG	7038	broad.mit.edu	37	chr8	134024420	134024420	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggattaacctggggaagaAgacctgggtgaagtctcctc	14	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134024420	T	T	134024420	1	4	191	0	1	0	0	0	0	0	0	0	15936	87	3	5		5	TG	8	134024420	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	142422	134024420	12339602	1189	153599											
TG	7038	broad.mit.edu	37	chr8	134108322	134108322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctgccagttgtcctgGtcactttttctcagtagagt	9	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134108322	T	T	134108322	1	4	191	0	1	0	0	0	0	0	0	0	15936	1276	44	3		3	TG	8	134108322	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	83902	134108322	12255700	1190	153600											
ST3GAL1	6482	broad.mit.edu	37	chr8	134488273	134488273	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgcagggtcaccatcttcgCagtcctgatggtggcctccc	11	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134488273	G	G	134488273	1	3	191	0	1	0	0	0	0	0	0	0	15332	725	25	4		4	ST3GAL1	8	134488273	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	379951	134488273	11875749	1191	153601											
ZFAT	57623	broad.mit.edu	37	chr8	135613823	135613823	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggaccttcatgaaagcGgtgatgcctgaccggtgctc	12	11	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135613823	A	A	135613823	2	1	191	1	0	0	0	0	0	0	0	1	17758	1103	39	4		4	ZFAT	8	135613823	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1125550	135613823	10750199	1192	153602											
FAM135B	51059	broad.mit.edu	37	chr8	139153624	139153624	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggggtacccatgagtGtgacggtgaatgctgctgcc	15	9	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139153624	C	C	139153624	1	2	191	0	1	0	0	0	0	0	0	0	5495	1392	48	4		4	FAM135B	8	139153624	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3539801	139153624	7210398	1193	153603											
FAM135B	51059	broad.mit.edu	37	chr8	139163634	139163634	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagataagttcacaacctcCacagccttcaggctgtccag	7	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139163634	A	A	139163634	2	1	191	1	0	0	0	0	0	0	0	1	5495	581	21	2		2	FAM135B	8	139163634	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	10010	139163634	7200388	1194	153604											
FAM135B	51059	broad.mit.edu	37	chr8	139255187	139255187	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccccacacaggccttacctCtgaggaagtcggcttgcagt	11	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139255187	T	T	139255187	3	4	191	1	0	0	0	0	1	0	0	0	5495	922	32	4	3609	4	FAM135B	8	139255187	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	91553	139255187	7108835	1195	153605											
TRAPPC9	83696	broad.mit.edu	37	chr8	141285683	141285683	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttagattctctgaaaactGagaatttaaagtatctcttc	5	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141285683	A	A	141285683	1	1	191	0	1	0	0	0	0	0	0	0	16589	1305	45	4		4	TRAPPC9	8	141285683	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2030496	141285683	5078339	1196	153606											
EIF2C2	27161	broad.mit.edu	37	chr8	141567304	141567304	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccaccgtgcactccaCcgtctgcccgctctcctgct	9	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141567304	T	T	141567304	3	4	191	1	0	0	0	0	1	0	0	0	5046	507	18	4	1717	4	EIF2C2	8	141567304	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	281621	141567304	4796718	1197	153607											
PTK2	5747	broad.mit.edu	37	chr8	141754835	141754835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagatgctagatccaaaCtgtatttccttacttgcaaa	5	9	1	2	rs146511319	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141754835	A	A	141754835	3	1	191	1	0	0	0	0	1	0	0	0	12868	565	20	3	1664	3	PTK2	8	141754835	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	187531	141754835	4609187	1198	153608											
LY6D	8581	broad.mit.edu	37	chr8	143867131	143867131	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggagtccggctcagcgGgcccaacagaggcctcctgg	17	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143867131	T	T	143867131	1	4	191	0	1	0	0	0	0	0	0	0	9178	1247	43	2		2	LY6D	8	143867131	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2112296	143867131	2496891	1199	153609											
EPPK1	83481	broad.mit.edu	37	chr8	144944968	144944968	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccatacttcacggagagCagcaggttctggaaggcctg	13	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144944968	A	A	144944968	2	1	191	1	0	0	0	0	0	0	0	1	5232	697	25	3		3	EPPK1	8	144944968	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1077837	144944968	1419054	1200	153610											
PARP10	84875	broad.mit.edu	37	chr8	145060242	145060242	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgcaggctctctgaaggtGaggacgcccccacagcccag	12	16	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145060242	C	C	145060242	2	2	191	1	0	0	0	0	0	0	0	1	11549	1277	45	4		4	PARP10	8	145060242	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	115274	145060242	1303780	1201	153611											
SPATC1	375686	broad.mit.edu	37	chr8	145101812	145101812	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgctgctgctctcctgcctCagccagctggcgcacgatga	11	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145101812	A	A	145101812	2	1	191	1	0	0	0	0	0	0	0	1	15133	813	29	3		3	SPATC1	8	145101812	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	41570	145101812	1262210	1202	153612											
GPAA1	8733	broad.mit.edu	37	chr8	145139557	145139557	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatgcccaggatggggtcTagctggagcggagtggggga	19	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145139557	C	C	145139557	1	2	191	0	1	0	0	0	0	0	0	0	6652	1537	53	5		5	GPAA1	8	145139557	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	37745	145139557	1224465	1203	153613											
ADCK5	203054	broad.mit.edu	37	chr8	145617269	145617269	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctcggggtgggcgcagcgcGacctaagaggctgtatccct	15	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145617269	C	C	145617269	1	2	191	0	1	0	0	0	0	0	0	0	291	1073	37	4		4	ADCK5	8	145617269	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	477712	145617269	746753	1204	153614											
ZNF250	58500	broad.mit.edu	37	chr8	146107494	146107494	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacgtgtagggcttctcCccggtgtggatcctctggtg	14	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146107494	T	T	146107494	2	4	191	1	0	0	0	0	0	0	0	1	17921	610	22	4		4	ZNF250	8	146107494	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	490225	146107494	256528	1205	153615											
DMRT2	10655	broad.mit.edu	37	chr9	1056563	1056563	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaactaatttcttctaatGtcagcgtggccacaacttat	7	9	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1056563	A	A	1056563	3	1	191	1	0	0	0	0	1	0	0	0	4626	1377	48	4	1043	4	DMRT2	9	1056563	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08		1056563	140156868	1206	153616											
CD274	29126	broad.mit.edu	37	chr9	5465513	5465513	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagaactacctctggcaCatcctccaaatgaaaggact	6	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5465513	T	T	5465513	3	4	191	1	0	0	0	0	1	0	0	0	3021	478	17	4	711	4	CD274	9	5465513	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4408950	5465513	135747918	1207	153617											
PTPRD	5789	broad.mit.edu	37	chr9	8499764	8499764	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgctgtttattgggcacGggtgagcgccatgagacttt	13	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8499764	T	T	8499764	2	4	191	1	0	0	0	0	0	0	0	1	12907	1103	39	1		1	PTPRD	9	8499764	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	3034251	8499764	132713667	1208	153618											
PTPRD	5789	broad.mit.edu	37	chr9	8501071	8501071	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgacggctcttattttggtAgtgagttaaaggaggattta	12	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8501071	T	T	8501071	1	4	191	0	1	0	0	0	0	0	0	0	12907	435	15	5		5	PTPRD	9	8501071	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1307	8501071	132712360	1209	153619											
PTPRD	5789	broad.mit.edu	37	chr9	8518231	8518231	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaccctgaattcataatccGagtagggacttagtccagcg	9	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8518231	T	T	8518231	4	4	191	1	0	0	0	0	0	1	0	0	12907	1059	37	3	4750	3	PTPRD	9	8518231	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	17160	8518231	132695200	1210	153620											
FREM1	158326	broad.mit.edu	37	chr9	14797768	14797768	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttatcagtgcagtagggtGaaattaaacttgttttatga	9	3	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797768	A	A	14797768	1	1	191	0	1	0	0	0	0	0	0	0	6104	1305	45	4		4	FREM1	9	14797768	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	6279537	14797768	126415663	1211	153621											
FREM1	158326	broad.mit.edu	37	chr9	14859203	14859203	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactctgggaaaaaactgtgTggctgatctccacgaggttc	12	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14859203	C	C	14859203	2	2	191	1	0	0	0	0	0	0	0	1	6104	1683	59	5		5	FREM1	9	14859203	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	61435	14859203	126354228	1212	153622											
SH3GL2	6456	broad.mit.edu	37	chr9	17795576	17795576	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccctgctgccgagctctGtacgactttgaacctgaaaa	9	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17795576	T	T	17795576	2	4	191	1	0	0	0	0	0	0	0	1	14364	1364	48	3		3	SH3GL2	9	17795576	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2936373	17795576	123417855	1213	153623											
IFNA6	3443	broad.mit.edu	37	chr9	21350617	21350617	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgagtcctttgtgctgaaGaggttgaaggtctgctgaat	14	5	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21350617	T	T	21350617	2	4	191	1	0	0	0	0	0	0	0	1	7611	929	33	3		3	IFNA6	9	21350617	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	3555041	21350617	119862814	1214	153624											
AQP7	364	broad.mit.edu	37	chr9	33387159	33387159	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagaggagggctcagagctCagttctagctcctcaccccc	10	15	5	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33387159	G	G	33387159	1	3	191	0	1	0	0	0	0	0	0	0	833	841	29	4		4	AQP7	9	33387159	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	12036542	33387159	107826272	1215	153625											
PIGO	84720	broad.mit.edu	37	chr9	35092239	35092239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacagcaggagtaacaggaCgggcccagggatgggaaaca	15	8	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35092239	A	A	35092239	3	1	191	1	0	0	0	0	1	0	0	0	11989	536	19	3	1644	3	PIGO	9	35092239	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1705080	35092239	106121192	1216	153626											
PIGO	84720	broad.mit.edu	37	chr9	35094437	35094437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagaggccctttaaagaCccatcagaagtcccaaccat	7	12	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35094437	A	A	35094437	1	1	191	0	1	0	0	0	0	0	0	0	11989	522	18	3		3	PIGO	9	35094437	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2198	35094437	106118994	1217	153627											
TLN1	7094	broad.mit.edu	37	chr9	35700302	35700302	+	Silent	SNP	G	A	A													gccttggcggttgccatggtGatacccttggtcattcggat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35700302	A	A	35700302	2	1	191	1	0	0	0	0	0	0	0	1	16070	1280	45	4		4	TLN1	9	35700302	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	605865	35700302	105513129	1218	153628	658	2									
TLN1	7094	broad.mit.edu	37	chr9	35700304	35700304	+	Missense_Mutation	SNP	T	A	A													cttggcggttgccatggtgaTacccttggtcattcggatga							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35700304	A	A	35700304	3	1	191	1	0	0	0	0	1	0	0	0	16070	1406	49	5	1117	5	TLN1	9	35700304	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2	35700304	105513127	1219	153629	658	2									
PGM5	5239	broad.mit.edu	37	chr9	71098950	71098950	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaccctgtggatggcactGtgaccaagaaacaggtactt	12	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71098950	A	A	71098950	3	1	191	1	0	0	0	0	1	0	0	0	11896	1377	48	4	1499	4	PGM5	9	71098950	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	35398646	71098950	70114481	1220	153630											
PIP5K1B	8395	broad.mit.edu	37	chr9	71555567	71555567	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcgttcctagccctgGgatcccgacacaggccagac	10	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71555567	C	C	71555567	3	2	191	1	0	0	0	0	1	0	0	0	12035	1233	43	4	1405	4	PIP5K1B	9	71555567	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	456617	71555567	69657864	1221	153631											
SMC5	23137	broad.mit.edu	37	chr9	72967157	72967157	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacagttttgtttgtctaCaatggccctcatatgctgga	9	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72967157	T	T	72967157	2	4	191	1	0	0	0	0	0	0	0	1	14900	489	17	4		4	SMC5	9	72967157	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1411590	72967157	68246274	1222	153632											
C9orf85	138241	broad.mit.edu	37	chr9	74526692	74526692	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggctcgttccagacctcaGaagcaccagaatacgtttag	10	11	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74526692	A	A	74526692	2	1	191	1	0	0	0	0	0	0	0	1	2527	933	33	4		4	C9orf85	9	74526692	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1559535	74526692	66686739	1223	153633											
OSTF1	26578	broad.mit.edu	37	chr9	77745657	77745657	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctgagaaagcaatggaGtcattgtcagtctaggacat	13	6	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77745657	T	T	77745657	1	4	191	0	1	0	0	0	0	0	0	0	11391	1044	36	3		3	OSTF1	9	77745657	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3218965	77745657	63467774	1224	153634											
PCSK5	5125	broad.mit.edu	37	chr9	78710913	78710913	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagcatctacaccatctcCatcagcagcactgcagaaag	6	14	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78710913	T	T	78710913	2	4	191	1	0	0	0	0	0	0	0	1	11697	581	21	4		4	PCSK5	9	78710913	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	965256	78710913	62502518	1225	153635											
VPS13A	23230	broad.mit.edu	37	chr9	79929505	79929505	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaatgtatacagatggctCaacattttcttccttctcat	4	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79929505	A	A	79929505	4	1	191	1	0	0	0	0	0	1	0	0	17316	838	29	3	4483	3	VPS13A	9	79929505	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1218592	79929505	61283926	1226	153636											
TLE4	7091	broad.mit.edu	37	chr9	82269041	82269041	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcttaaaagggctgtaaatGatttgaatgaatctagtaaa	10	3	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82269041	T	T	82269041	1	4	191	0	1	0	0	0	0	0	0	0	16064	1305	45	3		3	TLE4	9	82269041	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2339536	82269041	58944390	1227	153637											
TLE4	7091	broad.mit.edu	37	chr9	82323190	82323190	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaagaaaaaagttttttctAtatttttatgctcgttttta	5	3	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82323190	T	T	82323190	1	4	191	0	1	0	0	0	0	0	0	0	16064	464	16	5		5	TLE4	9	82323190	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	54149	82323190	58890241	1228	153638											
TLE1	7088	broad.mit.edu	37	chr9	84202840	84202840	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accgtgtgtgtgtgtgtgtgTgtgtgtgtgtgtgtgtgtgt	19	2	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84202840	C	C	84202840	1	2	191	0	1	0	0	0	0	0	0	0	16061	1711	59	5		5	TLE1	9	84202840	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1879650	84202840	57010591	1229	153639											
FLJ44082	389762	broad.mit.edu	37	chr9	84564721	84564721	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagacaaggacagatagccCcaggaagttggacatttaag	11	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84564721	A	A	84564721	1	1	191	0	1	0	0	0	0	0	0	0	5988	638	22	2		2	FLJ44082	9	84564721	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	361881	84564721	56648710	1230	153640											
FLJ46321	389763	broad.mit.edu	37	chr9	84603710	84603710	+	5'UTR	SNP	T	A	A													accctcagtgctcagttgctTcaggcagctgagctattcag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84603710	A	A	84603710	1	1	191	0	1	0	0	0	0	0	0	0	5990	1798	62	5		5	FLJ46321	9	84603710	5'UTR	SNP	T	TCGA-64-5781-01A-01D-1625-08	38989	84603710	56609721	1231	153641	659	2									
FLJ46321	389763	broad.mit.edu	37	chr9	84603714	84603714	+	5'UTR	SNP	G	A	A													tcagtgctcagttgcttcagGcagctgagctattcagacca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84603714	A	A	84603714	1	1	191	0	1	0	0	0	0	0	0	0	5990	1218	42	4		4	FLJ46321	9	84603714	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	4	84603714	56609717	1232	153642	659	2									
FRMD3	257019	broad.mit.edu	37	chr9	85958079	85958079	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccacagtgcaaaggtggCgtgggtgagctgtggccaga	17	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85958079	T	T	85958079	1	4	191	0	1	0	0	0	0	0	0	0	6110	783	27	4		4	FRMD3	9	85958079	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1354365	85958079	55255352	1233	153643											
SLC28A3	64078	broad.mit.edu	37	chr9	86912137	86912137	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaggtttgactttaccTtaaatgcaaagaagtggtct	8	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86912137	C	C	86912137	3	2	191	1	0	0	0	0	1	0	0	0	14647	1623	56	5	1259	5	SLC28A3	9	86912137	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	954058	86912137	54301294	1234	153644											
NTRK2	4915	broad.mit.edu	37	chr9	87486716	87486716	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattgcagggcccagaggttCccccaagaccgcctgataat	10	13	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87486716	T	T	87486716	1	4	191	0	1	0	0	0	0	0	0	0	10802	855	30	4		4	NTRK2	9	87486716	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	574579	87486716	53726715	1235	153645											
FAM75C1	441452	broad.mit.edu	37	chr9	90537715	90537715	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctactcacaagagggagaacTctaggaagcccaacttagaa	9	10	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90537715	A	A	90537715	3	1	191	1	0	0	0	0	1	0	0	0	5676	1551	54	5	2907	5	FAM75C1	9	90537715	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	3050999	90537715	50675716	1236	153646											
FAM75C1	441452	broad.mit.edu	37	chr9	90537946	90537946	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccagtcactgctgagagcCaaaaaacagtaaaaaacaga	7	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90537946	G	G	90537946	3	3	191	1	0	0	0	0	1	0	0	0	5676	595	21	4	3138	4	FAM75C1	9	90537946	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	231	90537946	50675485	1237	153647											
WNK2	65268	broad.mit.edu	37	chr9	95992121	95992121	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgcattgtgctggtgacGgagctgatgacctcagggac	16	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95992121	T	T	95992121	2	4	191	1	0	0	0	0	0	0	0	1	17505	1103	39	1		1	WNK2	9	95992121	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	5454175	95992121	45221310	1238	153648											
PTPDC1	138639	broad.mit.edu	37	chr9	96860156	96860156	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggaatgttgagtgccttcaAcccctgactcatctgaaaag	9	11	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96860156	T	T	96860156	3	4	191	1	0	0	0	0	1	0	0	0	12879	40	2	5	1410	5	PTPDC1	9	96860156	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	868035	96860156	44353275	1239	153649											
COL15A1	1306	broad.mit.edu	37	chr9	101806849	101806849	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatgttctctgaattgcaGggcgagaagggagagccggg	18	6	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101806849	A	A	101806849	5	1	191	1	0	0	0	0	0	0	1	0	3704	1014	35	4	2672	4	COL15A1	9	101806849	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	4946693	101806849	39406582	1240	153650											
ERP44	23071	broad.mit.edu	37	chr9	102820043	102820043	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccttcccctttctagcaaaGaaaaattaacctttagcaag	4	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102820043	C	C	102820043	1	2	191	0	1	0	0	0	0	0	0	0	5285	957	33	4		4	ERP44	9	102820043	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1013194	102820043	38393388	1241	153651											
MRPL50	54534	broad.mit.edu	37	chr9	104160913	104160913	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgagcgcagccttcagcCagcagtgacgcgcccagacc	12	17	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104160913	G	G	104160913	1	3	191	0	1	0	0	0	0	0	0	0	9908	609	21	4		4	MRPL50	9	104160913	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	1340870	104160913	37052518	1242	153652											
GRIN3A	116443	broad.mit.edu	37	chr9	104433159	104433159	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaccactctcaagtgtagcTtacttggatgttggaagtgg	11	7	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104433159	A	A	104433159	3	1	191	1	0	0	0	0	1	0	0	0	6849	1609	56	5	1840	5	GRIN3A	9	104433159	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	272246	104433159	36780272	1243	153653											
GRIN3A	116443	broad.mit.edu	37	chr9	104448837	104448837	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaattttactctctgtcatGgccctatgaatggggatata	10	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104448837	A	A	104448837	1	1	191	0	1	0	0	0	0	0	0	0	6849	1363	47	4		4	GRIN3A	9	104448837	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	15678	104448837	36764594	1244	153654											
CYLC2	1539	broad.mit.edu	37	chr9	105767801	105767801	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagtctaagaaggacgcCacgaaagatgccaagaaagt	11	7	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105767801	A	A	105767801	2	1	191	1	0	0	0	0	0	0	0	1	4175	581	21	2		2	CYLC2	9	105767801	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1318964	105767801	35445630	1245	153655											
SMC2	10592	broad.mit.edu	37	chr9	106858613	106858613	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctttgggtatcttaagaCcttttatgtctgatgtggtt	9	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106858613	T	T	106858613	1	4	191	0	1	0	0	0	0	0	0	0	14897	522	18	4		4	SMC2	9	106858613	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1090812	106858613	34354818	1246	153656											
OR13C5	138799	broad.mit.edu	37	chr9	107360953	107360953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcccacagaatgttatcaCcacagtcagacgagctgagc	10	12	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107360953	A	A	107360953	3	1	191	1	0	0	0	0	1	0	0	0	11031	507	18	3	216	3	OR13C5	9	107360953	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	502340	107360953	33852478	1247	153657											
OR13C2	392376	broad.mit.edu	37	chr9	107367420	107367420	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagaaaggcaattgtacCacaaacactgattgtactgc	8	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107367420	A	A	107367420	2	1	191	1	0	0	0	0	0	0	0	1	11028	581	21	2		2	OR13C2	9	107367420	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	6467	107367420	33846011	1248	153658											
C9orf5	23731	broad.mit.edu	37	chr9	111826617	111826617	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgatctttcaaaagatttCattgtatgttgcttacctgt	7	6	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111826617	T	T	111826617	1	4	191	0	1	0	0	0	0	0	0	0	2512	841	29	4		4	C9orf5	9	111826617	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4459197	111826617	29386814	1249	153659											
SVEP1	79987	broad.mit.edu	37	chr9	113275161	113275161	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagtttaaatcaaggaaatCaggcaagacagtaaataaac	8	5	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113275161	A	A	113275161	1	1	191	0	1	0	0	0	0	0	0	0	15538	841	29	3		3	SVEP1	9	113275161	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1448544	113275161	27938270	1250	153660											
ZFP37	7539	broad.mit.edu	37	chr9	115811584	115811584	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaagaaaggtctaggatCtttaagaagaatttcagaat	9	3	3	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115811584	A	A	115811584	1	1	191	0	1	0	0	0	0	0	0	0	17774	928	32	3		3	ZFP37	9	115811584	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2536423	115811584	25401847	1251	153661											
ASTN2	23245	broad.mit.edu	37	chr9	119737583	119737583	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggaaccacaaagcttttgCtgacaggaagccagaggcct	12	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119737583	T	T	119737583	3	4	191	1	0	0	0	0	1	0	0	0	1069	797	28	4	2514	4	ASTN2	9	119737583	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3925999	119737583	21475848	1252	153662											
ASTN2	23245	broad.mit.edu	37	chr9	119737608	119737608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagccagaggccttggcCcaagctgaaagtagacctgc	13	11	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119737608	A	A	119737608	3	1	191	1	0	0	0	0	1	0	0	0	1069	623	22	2	2539	2	ASTN2	9	119737608	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	25	119737608	21475823	1253	153663											
TLR4	7099	broad.mit.edu	37	chr9	120476336	120476336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcctcagtgtgcttgtaGtatctgttgtagcagttctg	12	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120476336	T	T	120476336	3	4	191	1	0	0	0	0	1	0	0	0	16076	1029	36	3	1940	3	TLR4	9	120476336	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	738728	120476336	20737095	1254	153664											
TLR4	7099	broad.mit.edu	37	chr9	120476778	120476778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtaccgccttctcagcaGgaacacttacctggagtggg	12	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120476778	T	T	120476778	3	4	191	1	0	0	0	0	1	0	0	0	16076	1000	35	2	2382	2	TLR4	9	120476778	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	442	120476778	20736653	1255	153665											
FBXW2	26190	broad.mit.edu	37	chr9	123535119	123535119	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacttctgcaaaactacCtgcaaatgtaaaccatgtta	5	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123535119	A	A	123535119	5	1	191	1	0	0	0	0	0	0	1	0	5823	695	24	2	557	2	FBXW2	9	123535119	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	3058341	123535119	17678312	1256	153666											
C5	727	broad.mit.edu	37	chr9	123753595	123753595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggatttatacagagtttcCaggggaagactgtttgcaga	12	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123753595	A	A	123753595	1	1	191	0	1	0	0	0	0	0	0	0	2303	609	21	2		2	C5	9	123753595	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	218476	123753595	17459836	1257	153667											
CEP110	11064	broad.mit.edu	37	chr9	123877466	123877466	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacaactggaagaagctatAcaactaaaaaaggtatgtaa	7	5	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123877466	T	T	123877466	2	4	191	1	0	0	0	0	0	0	0	1	3275	381	14	5		5	CEP110	9	123877466	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	123871	123877466	17335965	1258	153668											
DAB2IP	153090	broad.mit.edu	37	chr9	124544764	124544764	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacggcgagttcagaaacaGcagcaattgttaacctgcct	10	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124544764	A	A	124544764	1	1	191	0	1	0	0	0	0	0	0	0	4252	971	34	4		4	DAB2IP	9	124544764	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	667298	124544764	16668667	1259	153669											
NDUFA8	4702	broad.mit.edu	37	chr9	124922030	124922030	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgaactcccctttcgaCcgccgagtgccacacggcgc	9	18	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124922030	A	A	124922030	1	1	191	0	1	0	0	0	0	0	0	0	10366	522	18	3		3	NDUFA8	9	124922030	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	377266	124922030	16291401	1260	153670											
PTGS1	5742	broad.mit.edu	37	chr9	125154597	125154597	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagagtatgatagagattgGggctcccttttccctcaagg	13	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125154597	C	C	125154597	3	2	191	1	0	0	0	0	1	0	0	0	12861	1232	43	4	1616	4	PTGS1	9	125154597	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	232567	125154597	16058834	1261	153671											
CRB2	286204	broad.mit.edu	37	chr9	126136903	126136903	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcctgaatgtcacctgcctCgatggcagcccatgtgaggg	13	12	1	2	rs148933240	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126136903	A	A	126136903	2	1	191	1	0	0	0	0	0	0	0	1	3881	871	31	3		3	CRB2	9	126136903	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	982306	126136903	15076528	1262	153672											
STXBP1	6812	broad.mit.edu	37	chr9	130432211	130432211	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgaaagatttttcttctAgcaagagaatgaatactgga	8	6	3	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130432211	T	T	130432211	3	4	191	1	0	0	0	0	1	0	0	0	15470	420	15	5	979	5	STXBP1	9	130432211	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	4295308	130432211	10781220	1263	153673											
SH2D3C	10044	broad.mit.edu	37	chr9	130511549	130511549	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagcccatcggtcatggtGacgctgcgccgcttcatgtg	14	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130511549	A	A	130511549	2	1	191	1	0	0	0	0	0	0	0	1	14347	1277	45	4		4	SH2D3C	9	130511549	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	79338	130511549	10701882	1264	153674											
PHYHD1	254295	broad.mit.edu	37	chr9	131703596	131703596	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgcagatgcctgagctttCagggaagggaatggggatgg	18	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131703596	T	T	131703596	1	4	191	0	1	0	0	0	0	0	0	0	11960	841	29	4		4	PHYHD1	9	131703596	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1192047	131703596	9509835	1265	153675											
PHYHD1	254295	broad.mit.edu	37	chr9	131703918	131703918	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaacagtgaccctgcacctCaaggttgtttctcctctatc	8	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131703918	T	T	131703918	1	4	191	0	1	0	0	0	0	0	0	0	11960	841	29	4		4	PHYHD1	9	131703918	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	322	131703918	9509513	1266	153676											
POMT1	10585	broad.mit.edu	37	chr9	134388752	134388752	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtctgctctgctgcacctGtgggtttcctctgtggttct	11	13	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134388752	A	A	134388752	1	1	191	0	1	0	0	0	0	0	0	0	12340	1392	48	4		4	POMT1	9	134388752	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2684834	134388752	6824679	1267	153677											
SARDH	1757	broad.mit.edu	37	chr9	136573484	136573484	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacgacggagtagttcttGgcgtaggactcatggcttcg	14	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136573484	T	T	136573484	2	4	191	1	0	0	0	0	0	0	0	1	13953	1335	47	2		2	SARDH	9	136573484	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2184732	136573484	4639947	1268	153678											
SARDH	1757	broad.mit.edu	37	chr9	136595406	136595406	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcccagaggggagctgGggacactatttctgccagca	12	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136595406	A	A	136595406	1	1	191	0	1	0	0	0	0	0	0	0	13953	1247	43	4		4	SARDH	9	136595406	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	21922	136595406	4618025	1269	153679											
COL5A1	1289	broad.mit.edu	37	chr9	137703108	137703108	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgcatcagtccccgggctCaggatgcggtccacccctcc	11	17	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137703108	G	G	137703108	1	3	191	0	1	0	0	0	0	0	0	0	3728	841	29	4		4	COL5A1	9	137703108	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1107702	137703108	3510323	1270	153680											
KCNT1	57582	broad.mit.edu	37	chr9	138642913	138642913	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtgcgcggccgggcgcGgggtcccgggtcccagggct	19	16	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138642913	C	C	138642913	1	2	191	0	1	0	0	0	0	0	0	0	8161	1131	39	4		4	KCNT1	9	138642913	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	939805	138642913	2570518	1271	153681											
LCN8	138307	broad.mit.edu	37	chr9	139652454	139652454	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcagcctggcctccgtggCggggtccgggctccgggttc	18	15	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139652454	A	A	139652454	1	1	191	0	1	0	0	0	0	0	0	0	8758	783	27	3		3	LCN8	9	139652454	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	1009541	139652454	1560977	1272	153682											
ABCA2	20	broad.mit.edu	37	chr9	139905127	139905127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cggcgtctccccggagcactCgctgccgctcactggccacg	12	19	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139905127	A	A	139905127	3	1	191	1	0	0	0	0	1	0	0	0	32	884	31	3	1231	3	ABCA2	9	139905127	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	252673	139905127	1308304	1273	153683											
ENTPD2	954	broad.mit.edu	37	chr9	139944322	139944322	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgggagcggggctcacCtgagcccaggtctggttgca	18	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139944322	G	G	139944322	3	3	191	1	0	0	0	0	1	0	0	0	5181	695	24	4	350	4	ENTPD2	9	139944322	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	39195	139944322	1269109	1274	153684											
CACNA1B	774	broad.mit.edu	37	chr9	140952664	140952664	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaccttccaggagcaggggGacaaggtgatgtctgaatgc	14	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140952664	A	A	140952664	3	1	191	1	0	0	0	0	1	0	0	0	2565	1174	41	4	4380	4	CACNA1B	9	140952664	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1008342	140952664	260767	1275	153685											
NET1	10276	broad.mit.edu	37	chr10	5495190	5495190	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctcacatgatctctctgtGacacatttctcccctctgac	4	16	5	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5495190	A	A	5495190	1	1	191	0	1	0	0	0	0	0	0	0	10433	1305	45	4		4	NET1	10	5495190	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08		5495190	130039557	1276	153686											
IL15RA	3601	broad.mit.edu	37	chr10	5995118	5995118	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggtcccccaagtcacCggcagagcctccatggcttc	10	17	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5995118	T	T	5995118	2	4	191	1	0	0	0	0	0	0	0	1	7702	639	23	4		4	IL15RA	10	5995118	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	499928	5995118	129539629	1277	153687											
PFKFB3	5209	broad.mit.edu	37	chr10	6261507	6261507	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agccttccagcgtgatttatCagccacccctttgtggtgtt	9	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6261507	G	G	6261507	1	3	191	0	1	0	0	0	0	0	0	0	11857	841	29	4		4	PFKFB3	10	6261507	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	266389	6261507	129273240	1278	153688											
ITIH5	80760	broad.mit.edu	37	chr10	7621752	7621752	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcgtcctcctcctcgtGcacgcgccgtgtgaggccac	12	18	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7621752	T	T	7621752	3	4	191	1	0	0	0	0	1	0	0	0	7977	1319	46	3	1591	3	ITIH5	10	7621752	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1360245	7621752	127912995	1279	153689											
ITIH5	80760	broad.mit.edu	37	chr10	7659155	7659155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattccattctgggcaatcCtggcttgttgtactacagta	8	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7659155	A	A	7659155	3	1	191	1	0	0	0	0	1	0	0	0	7977	681	24	2	2244	2	ITIH5	10	7659155	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	37403	7659155	127875592	1280	153690											
GATA3	2625	broad.mit.edu	37	chr10	8100386	8100386	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagccccttctccaagacGtccatccaccacggctcccc	5	22	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8100386	T	T	8100386	2	4	191	1	0	0	0	0	0	0	0	1	6317	1132	40	3		3	GATA3	10	8100386	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	441231	8100386	127434361	1281	153691											
GATA3	2625	broad.mit.edu	37	chr10	8115980	8115980	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcatggtcaccgccatGggttagagccctgctcgatg	12	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8115980	T	T	8115980	3	4	191	1	0	0	0	0	1	0	0	0	6317	1348	47	2	1347	2	GATA3	10	8115980	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	15594	8115980	127418767	1282	153692											
CAMK1D	57118	broad.mit.edu	37	chr10	12870690	12870690	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccataaacccagcccCtctgacacctggcagtggga	8	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12870690	G	G	12870690	1	3	191	0	1	0	0	0	0	0	0	0	2623	696	24	4		4	CAMK1D	10	12870690	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4754710	12870690	122664057	1283	153693											
ITGA8	8516	broad.mit.edu	37	chr10	15639334	15639334	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagggggtttagggggcagGataaatgacatcctgacaca	14	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15639334	A	A	15639334	1	1	191	0	1	0	0	0	0	0	0	0	7952	1189	41	4		4	ITGA8	10	15639334	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2768644	15639334	119895413	1284	153694											
ITGA8	8516	broad.mit.edu	37	chr10	15720659	15720659	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttttggggtgtgggagtgaGaggcagagggtaaaaaaaaa	18	1	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15720659	A	A	15720659	1	1	191	0	1	0	0	0	0	0	0	0	7952	957	33	4		4	ITGA8	10	15720659	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	81325	15720659	119814088	1285	153695											
CUBN	8029	broad.mit.edu	37	chr10	16941090	16941090	+	Frame_Shift_Del	DEL	C	-	-													tttacttttgtgagtaatggCcgtccaggaacatctgctgt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16941090	-	-	16941090	7	5	191	1	0	1	0	1	0	0	0	0	4084	739	26	0	2424	0	CUBN	10	16941090	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	1220431	16941090	118593657	1286	153696											
CUBN	8029	broad.mit.edu	37	chr10	16955835	16955835	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctcattgttgcaggacGgatgcgtggccagcctcagg	14	11	2	0	rs140983139	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16955835	A	A	16955835	3	1	191	1	0	0	0	0	1	0	0	0	4084	1116	39	4	3443	4	CUBN	10	16955835	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	14745	16955835	118578912	1287	153697											
MRC1	4360	broad.mit.edu	37	chr10	18138603	18138603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaaaatccagagggatGctctgaccacctgcaggaag	11	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18138603	T	T	18138603	3	4	191	1	0	0	0	0	1	0	0	0	9850	1319	46	3	5676	3	MRC1	10	18138603	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1182768	18138603	117396144	1288	153698											
SLC39A12	221074	broad.mit.edu	37	chr10	18270328	18270328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggactttaagcaaatgagtCcagggatcatccagcagctc	10	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18270328	A	A	18270328	3	1	191	1	0	0	0	0	1	0	0	0	14729	855	30	3	1030	3	SLC39A12	10	18270328	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	131725	18270328	117264419	1289	153699											
SLC39A12	221074	broad.mit.edu	37	chr10	18280127	18280127	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagaatttgggcatttccaTgaaagcaaaggtcatatttg	9	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18280127	A	A	18280127	3	1	191	1	0	0	0	0	1	0	0	0	14729	1461	51	5	1343	5	SLC39A12	10	18280127	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	9799	18280127	117254620	1290	153700											
SPAG6	9576	broad.mit.edu	37	chr10	22678165	22678165	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgcaaagggaacacacGgctgcctggcatcatgatgc	12	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22678165	T	T	22678165	3	4	191	1	0	0	0	0	1	0	0	0	15098	1116	39	1	955	1	SPAG6	10	22678165	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4398038	22678165	112856582	1291	153701											
ARHGAP21	57584	broad.mit.edu	37	chr10	24874021	24874021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttcataacatcaaacaCtttagttaacgaaggtgctt	5	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24874021	A	A	24874021	3	1	191	1	0	0	0	0	1	0	0	0	873	565	20	3	683	3	ARHGAP21	10	24874021	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2195856	24874021	110660726	1292	153702											
MYO3A	53904	broad.mit.edu	37	chr10	26310512	26310512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtatcacggccattgaGctgggtgatggagatcctcc	14	10	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26310512	T	T	26310512	3	4	191	1	0	0	0	0	1	0	0	0	10170	962	34	3	688	3	MYO3A	10	26310512	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1436491	26310512	109224235	1293	153703											
MYO3A	53904	broad.mit.edu	37	chr10	26359099	26359099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcacatttttgcaatGgctgacttaggatatcaatc	6	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26359099	T	T	26359099	3	4	191	1	0	0	0	0	1	0	0	0	10170	1348	47	2	1272	2	MYO3A	10	26359099	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	48587	26359099	109175648	1294	153704											
MYO3A	53904	broad.mit.edu	37	chr10	26457730	26457730	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgattcaagcttgtgtcagAgcattcttgtgttcaagaag	10	6	4	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26457730	T	T	26457730	3	4	191	1	0	0	0	0	1	0	0	0	10170	301	11	5	3303	5	MYO3A	10	26457730	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	98631	26457730	109077017	1295	153705											
ANKRD26	22852	broad.mit.edu	37	chr10	27303640	27303640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgagatgctgcttgtgCctaaaacaaattaaaagcat	7	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27303640	A	A	27303640	3	1	191	1	0	0	0	0	1	0	0	0	654	753	26	3	641	3	ANKRD26	10	27303640	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	845910	27303640	108231107	1296	153706											
PTCHD3	374308	broad.mit.edu	37	chr10	27701854	27701854	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtactgaacaggcccatcTggtggacataggatttgtgt	12	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27701854	A	A	27701854	1	1	191	0	1	0	0	0	0	0	0	0	12840	1595	55	5		5	PTCHD3	10	27701854	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	398214	27701854	107832893	1297	153707											
MTPAP	55149	broad.mit.edu	37	chr10	30611320	30611320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtttctttctagtcttacCtgctagggtttttaaggaat	8	6	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30611320	A	A	30611320	3	1	191	1	0	0	0	0	1	0	0	0	10050	695	24	2	545	2	MTPAP	10	30611320	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2909466	30611320	104923427	1298	153708											
ZEB1	6935	broad.mit.edu	37	chr10	31791232	31791232	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttagaaaacctttgtaataaCttagtggtgagattgctgtc	9	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31791232	G	G	31791232	1	3	191	0	1	0	0	0	0	0	0	0	17749	580	20	4		4	ZEB1	10	31791232	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1179912	31791232	103743515	1299	153709											
ARHGAP12	94134	broad.mit.edu	37	chr10	32098205	32098205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatcactgcgaggttgccaCttactctgtatatcccatca	8	12	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32098205	A	A	32098205	3	1	191	1	0	0	0	0	1	0	0	0	867	565	20	3	475	3	ARHGAP12	10	32098205	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	306973	32098205	103436542	1300	153710											
ANKRD30A	91074	broad.mit.edu	37	chr10	37431003	37431003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaagaagacacacctaGggaaattatgagtcccgcaa	9	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37431003	T	T	37431003	3	4	191	1	0	0	0	0	1	0	0	0	658	1000	35	2	1036	2	ANKRD30A	10	37431003	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5332798	37431003	98103744	1301	153711											
ZNF33B	7582	broad.mit.edu	37	chr10	43127492	43127492	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgttaacaggaaataattTaggatttggaccaagcagtc	9	7	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43127492	C	C	43127492	1	2	191	0	1	0	0	0	0	0	0	0	17981	1769	61	5		5	ZNF33B	10	43127492	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	5696489	43127492	92407255	1302	153712											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43651081	43651081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtatttcaattggaaatgGgtctcactcgccatcctgaa	8	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43651081	T	T	43651081	3	4	191	1	0	0	0	0	1	0	0	0	3973	1232	43	2	486	2	CSGALNACT2	10	43651081	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	523589	43651081	91883666	1303	153713											
HNRNPF	3185	broad.mit.edu	37	chr10	43882617	43882617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctcgtagcccccgtagCctgtgctgtaggcaccaggc	11	16	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43882617	A	A	43882617	3	1	191	1	0	0	0	0	1	0	0	0	7332	739	26	3	535	3	HNRNPF	10	43882617	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	231536	43882617	91652130	1304	153714											
SYT15	83849	broad.mit.edu	37	chr10	46962009	46962009	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagcgcatgccagcgcttCaccagctccttgggcttgct	11	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46962009	T	T	46962009	2	4	191	1	0	0	0	0	0	0	0	1	15590	813	29	4		4	SYT15	10	46962009	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	3079392	46962009	88572738	1305	153715											
MAPK8	5599	broad.mit.edu	37	chr10	49628332	49628332	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctactacagagcacccgaGgtcatccttggcatgggcta	11	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49628332	A	A	49628332	2	1	191	1	0	0	0	0	0	0	0	1	9375	991	35	4		4	MAPK8	10	49628332	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2666323	49628332	85906415	1306	153716											
CHAT	1103	broad.mit.edu	37	chr10	50854444	50854444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcaagacctgggtcttGttgtgatcccagaagacagg	13	9	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50854444	T	T	50854444	1	4	191	0	1	0	0	0	0	0	0	0	3344	1392	48	3		3	CHAT	10	50854444	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1226112	50854444	84680303	1307	153717											
MBL2	4153	broad.mit.edu	37	chr10	54529127	54529127	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagaaggagcctcagaaCtgtgcatatacaagggagtg	14	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54529127	A	A	54529127	1	1	191	0	1	0	0	0	0	0	0	0	9443	580	20	3		3	MBL2	10	54529127	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3674683	54529127	81005620	1308	153718											
PCDH15	65217	broad.mit.edu	37	chr10	55570360	55570360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcaccaaccacctcacCatattcctcctgtccagctg	4	18	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55570360	A	A	55570360	3	1	191	1	0	0	0	0	1	0	0	0	11605	594	21	2	1461	2	PCDH15	10	55570360	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1041233	55570360	79964387	1309	153719											
PCDH15	65217	broad.mit.edu	37	chr10	55581558	55581558	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttgacgttcaaatttgatGttcaacttgaagactatgat	7	6	2	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55581558	C	C	55581558	1	2	191	0	1	0	0	0	0	0	0	0	11605	1392	48	4		4	PCDH15	10	55581558	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	11198	55581558	79953189	1310	153720											
PCDH15	65217	broad.mit.edu	37	chr10	56138669	56138669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctggtcctccagcagtcCctttgatcagcatgttgtcc	10	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56138669	A	A	56138669	3	1	191	1	0	0	0	0	1	0	0	0	11605	623	22	2	7440	2	PCDH15	10	56138669	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	557111	56138669	79396078	1311	153721											
BICC1	80114	broad.mit.edu	37	chr10	60558294	60558294	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacattatgggcaccccCacttgctaatacttcaagtg	6	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60558294	T	T	60558294	3	4	191	1	0	0	0	0	1	0	0	0	1433	594	21	4	1544	4	BICC1	10	60558294	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4419625	60558294	74976453	1312	153722											
ANK3	288	broad.mit.edu	37	chr10	61835269	61835269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaaggagttcttagagaCtgaaaagctgatggtgctgc	15	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61835269	A	A	61835269	3	1	191	1	0	0	0	0	1	0	0	0	622	564	20	3	8104	3	ANK3	10	61835269	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1276975	61835269	73699478	1313	153723											
ZNF365	22891	broad.mit.edu	37	chr10	64159473	64159473	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagaaaggggagctcctGgggtttggccgcaaaggcaa	15	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64159473	T	T	64159473	2	4	191	1	0	0	0	0	0	0	0	1	17995	1335	47	2		2	ZNF365	10	64159473	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2324204	64159473	71375274	1314	153724											
CTNNA3	29119	broad.mit.edu	37	chr10	68535271	68535271	+	Frame_Shift_Del	DEL	T	-	-													ttcagggtattactcctttcTttttttccagcctgcaaaga							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68535271	-	-	68535271	7	5	191	1	0	1	0	1	0	0	0	0	4048	1606	56	0	1672	0	CTNNA3	10	68535271	Frame_Shift_Del	DEL	T	TCGA-64-5781-01A-01D-1625-08	4375798	68535271	66999476	1315	153725											
TET1	80312	broad.mit.edu	37	chr10	70450475	70450475	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcgttttcttatataattCtttgtacttgtctttgaaaa	5	6	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70450475	G	G	70450475	1	3	191	0	1	0	0	0	0	0	0	0	15891	928	32	4		4	TET1	10	70450475	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1915204	70450475	65084272	1316	153726											
CCAR1	55749	broad.mit.edu	37	chr10	70509542	70509542	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaagattgatttcccgAcagttagtgttcttcatata	7	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70509542	T	T	70509542	1	4	191	0	1	0	0	0	0	0	0	0	2756	290	10	5		5	CCAR1	10	70509542	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	59067	70509542	65025205	1317	153727											
COL13A1	1305	broad.mit.edu	37	chr10	71655287	71655287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcctaacaccacctttcCcttccctctccttcccaggg	5	19	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71655287	A	A	71655287	1	1	191	0	1	0	0	0	0	0	0	0	3702	638	22	2		2	COL13A1	10	71655287	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1145745	71655287	63879460	1318	153728											
SAR1A	56681	broad.mit.edu	37	chr10	71923601	71923601	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttacaggacatgattaatGaagtagatgctgatggtaat	11	3	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71923601	T	T	71923601	1	4	191	0	1	0	0	0	0	0	0	0	13951	1305	45	3		3	SAR1A	10	71923601	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	268314	71923601	63611146	1319	153729											
CDH23	64072	broad.mit.edu	37	chr10	73462102	73462102	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtagagtaatacccacgCcccagttgtgactcctagag	10	11	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73462102	T	T	73462102	1	4	191	0	1	0	0	0	0	0	0	0	3138	754	26	4		4	CDH23	10	73462102	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1538501	73462102	62072645	1320	153730											
DUSP13	51207	broad.mit.edu	37	chr10	76857662	76857662	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaacagagtggacacCgcagtggctggaggcaggct	16	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76857662	A	A	76857662	1	1	191	0	1	0	0	0	0	0	0	0	4853	667	23	1		1	DUSP13	10	76857662	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3395560	76857662	58677085	1321	153731											
KCNMA1	3778	broad.mit.edu	37	chr10	78846232	78846232	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaataaaagcagaagtcacCtcttcctccttaccttgact	6	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78846232	T	T	78846232	1	4	191	0	1	0	0	0	0	0	0	0	8143	696	24	4		4	KCNMA1	10	78846232	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1988570	78846232	56688515	1322	153732											
DLG5	9231	broad.mit.edu	37	chr10	79593690	79593690	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttgagctccttcagctcgCggctgacatcattcttctgc	8	14	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79593690	G	G	79593690	3	3	191	1	0	0	0	0	1	0	0	0	4598	768	27	4	4125	4	DLG5	10	79593690	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	747458	79593690	55941057	1323	153733											
POLR3A	11128	broad.mit.edu	37	chr10	79743987	79743987	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccaagagggttttctcaatTctccctttcacgaggcgagc	9	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79743987	A	A	79743987	3	1	191	1	0	0	0	0	1	0	0	0	12323	1780	62	5	888	5	POLR3A	10	79743987	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	150297	79743987	55790760	1324	153734											
NRG3	10718	broad.mit.edu	37	chr10	84625161	84625161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccttccatgctgactttgGtgtagcagaccacttgggga	11	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84625161	A	A	84625161	1	1	191	0	1	0	0	0	0	0	0	0	10744	1276	44	4		4	NRG3	10	84625161	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4881174	84625161	50909586	1325	153735											
LIPF	8513	broad.mit.edu	37	chr10	90427215	90427215	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagatgctattatttaaaatCataatgagttaaagatttta	5	2	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90427215	T	T	90427215	1	4	191	0	1	0	0	0	0	0	0	0	8895	841	29	4		4	LIPF	10	90427215	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	5802054	90427215	45107532	1326	153736											
STAMBPL1	57559	broad.mit.edu	37	chr10	90697797	90697797	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggcggcattgccactGggtctgtcactgaacagtac	12	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90697797	A	A	90697797	1	1	191	0	1	0	0	0	0	0	0	0	15369	1363	47	4		4	STAMBPL1	10	90697797	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	270582	90697797	44836950	1327	153737											
LIPA	3988	broad.mit.edu	37	chr10	90985062	90985062	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaacacaaaggccgtcactCgcgacgccctctcgcggagg	11	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90985062	T	T	90985062	1	4	191	0	1	0	0	0	0	0	0	0	8892	899	31	4		4	LIPA	10	90985062	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	287265	90985062	44549685	1328	153738											
IFIT1B	439996	broad.mit.edu	37	chr10	91143375	91143375	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacctggggcaactttgCctgggtgtattaccacatgg	14	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91143375	G	G	91143375	3	3	191	1	0	0	0	0	1	0	0	0	7592	739	26	4	311	4	IFIT1B	10	91143375	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	158313	91143375	44391372	1329	153739											
KIF20B	9585	broad.mit.edu	37	chr10	91476254	91476254	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacttttaaaactaggaatAaagcaccagagtgttgcctt	8	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91476254	G	G	91476254	3	3	191	1	0	0	0	0	1	0	0	0	8357	352	13	5	1032	5	KIF20B	10	91476254	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	332879	91476254	44058493	1330	153740											
KIF11	3832	broad.mit.edu	37	chr10	94389969	94389969	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggataataaaaatgaacttGaccagtgtaaatctgacctg	8	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94389969	A	A	94389969	3	1	191	1	0	0	0	0	1	0	0	0	8342	1290	45	4	1388	4	KIF11	10	94389969	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2913715	94389969	41144778	1331	153741											
CYP2C19	1557	broad.mit.edu	37	chr10	96602702	96602702	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggtgcacgaggtccagaGatacatcgacctcatcccca	10	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96602702	T	T	96602702	3	4	191	1	0	0	0	0	1	0	0	0	4199	942	33	3	1096	3	CYP2C19	10	96602702	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2212733	96602702	38932045	1332	153742											
CYP2C9	1559	broad.mit.edu	37	chr10	96748758	96748758	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgcctctgtgccgcccttCtaccagctgtgcttcattcc	7	16	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96748758	T	T	96748758	2	4	191	1	0	0	0	0	0	0	0	1	4201	912	32	4		4	CYP2C9	10	96748758	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	146056	96748758	38785989	1333	153743											
SORBS1	10580	broad.mit.edu	37	chr10	97174272	97174272	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtactcgaaacagctcccgtGaggtcaggctccgagactct	11	13	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97174272	A	A	97174272	2	1	191	1	0	0	0	0	0	0	0	1	15041	1277	45	4		4	SORBS1	10	97174272	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	425514	97174272	38360475	1334	153744											
BLNK	29760	broad.mit.edu	37	chr10	97983467	97983467	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataatagtggagagttagagGgggcagtcaatagcaggttg	16	3	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97983467	C	C	97983467	1	2	191	0	1	0	0	0	0	0	0	0	1453	1247	43	4		4	BLNK	10	97983467	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	809195	97983467	37551280	1335	153745											
ARHGAP19	84986	broad.mit.edu	37	chr10	98995163	98995163	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agctaagtgtaaataaaagtCcaggaaaaactgagtctgcg	10	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98995163	A	A	98995163	1	1	191	0	1	0	0	0	0	0	0	0	871	870	30	3		3	ARHGAP19	10	98995163	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1011696	98995163	36539584	1336	153746											
ZDHHC16	84287	broad.mit.edu	37	chr10	99214594	99214594	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttaagggaggggaagcttCagaaaaaaagttttttaggt	12	2	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99214594	T	T	99214594	1	4	191	0	1	0	0	0	0	0	0	0	17732	841	29	4		4	ZDHHC16	10	99214594	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	219431	99214594	36320153	1337	153747											
HPSE2	60495	broad.mit.edu	37	chr10	100481636	100481636	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaagtgtaaggttctgcCaacactttcctgtccacaga	9	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100481636	T	T	100481636	1	4	191	0	1	0	0	0	0	0	0	0	7412	609	21	4		4	HPSE2	10	100481636	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1267042	100481636	35053111	1338	153748											
GOT1	2805	broad.mit.edu	37	chr10	101180609	101180609	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtggaggctcatgctgtgtCcaagttaagagtttgtaact	12	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101180609	A	A	101180609	1	1	191	0	1	0	0	0	0	0	0	0	6643	870	30	3		3	GOT1	10	101180609	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	698973	101180609	34354138	1339	153749											
ABCC2	1244	broad.mit.edu	37	chr10	101594239	101594239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcatgatctgcatggccactCctgtcttcaccatcatcgtc	6	15	5	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101594239	A	A	101594239	3	1	191	1	0	0	0	0	1	0	0	0	53	855	30	3	3455	3	ABCC2	10	101594239	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	413630	101594239	33940508	1340	153750											
CPN1	1369	broad.mit.edu	37	chr10	101829324	101829324	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagacacggaagaaatatAtattattgctctagatgggt	9	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101829324	G	G	101829324	1	3	191	0	1	0	0	0	0	0	0	0	3841	464	16	5		5	CPN1	10	101829324	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	235085	101829324	33705423	1341	153751											
PKD2L1	9033	broad.mit.edu	37	chr10	102055997	102055997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggagcttccccatgagcCgattcacctcgagggttcgg	13	13	1	1	rs145997401	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102055997	T	T	102055997	3	4	191	1	0	0	0	0	1	0	0	0	12062	652	23	4	1219	4	PKD2L1	10	102055997	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	226673	102055997	33478750	1342	153752											
PAX2	5076	broad.mit.edu	37	chr10	102566402	102566402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcagaagtagaaaggagCcggcagagcaaggcctctca	13	10	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102566402	A	A	102566402	1	1	191	0	1	0	0	0	0	0	0	0	11573	754	26	3		3	PAX2	10	102566402	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	510405	102566402	32968345	1343	153753											
PAX2	5076	broad.mit.edu	37	chr10	102587471	102587471	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagggagggaggaccgacgcGacgcgatgcctcccggccac	17	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102587471	A	A	102587471	1	1	191	0	1	0	0	0	0	0	0	0	11573	1073	37	4		4	PAX2	10	102587471	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	21069	102587471	32947276	1344	153754											
FAM178A	55719	broad.mit.edu	37	chr10	102719030	102719030	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttgaaatctccttcaaaAgatgagtagtttattttctc	6	6	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102719030	T	T	102719030	1	4	191	0	1	0	0	0	0	0	0	0	5548	87	3	5		5	FAM178A	10	102719030	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	131559	102719030	32815717	1345	153755											
GBF1	8729	broad.mit.edu	37	chr10	104139301	104139301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctgcctgtgctgcgatGcccggcgccaggtacggatg	15	13	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104139301	T	T	104139301	3	4	191	1	0	0	0	0	1	0	0	0	6333	1319	46	3	4800	3	GBF1	10	104139301	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1420271	104139301	31395446	1346	153756											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105362061	105362061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaccgccacctgccgcaCtccgttcctcatcttcaccg	6	21	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105362061	A	A	105362061	3	1	191	1	0	0	0	0	1	0	0	0	14369	565	20	3	491	3	SH3PXD2A	10	105362061	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1222760	105362061	30172686	1347	153757											
ITPRIP	85450	broad.mit.edu	37	chr10	106074321	106074321	+	Missense_Mutation	SNP	C	T	T													gaagaggttgaggggctcggCcctgagcacggcctcaggga							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106074321	T	T	106074321	3	4	191	1	0	0	0	0	1	0	0	0	7993	739	26	4	158	4	ITPRIP	10	106074321	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	712260	106074321	29460426	1348	153758	660	2									
ITPRIP	85450	broad.mit.edu	37	chr10	106074328	106074328	+	Silent	SNP	C	A	A													ttgaggggctcggccctgagCacggcctcagggagtcccat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106074328	A	A	106074328	2	1	191	1	0	0	0	0	0	0	0	1	7993	697	25	3		3	ITPRIP	10	106074328	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	7	106074328	29460419	1349	153759	660	2									
SORCS3	22986	broad.mit.edu	37	chr10	106959779	106959780	+	Missense_Mutation	DNP	CG	TT	TT													tttttggccacttcagcctcCgctccgaatggcaattggtg					rs146574756		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	106959780	TT	TT	106959779	3	4	191	1	0	0	0	0	1	0	0	0	15046	652	23	4	2090	4	SORCS3	10	106959779	Missense_Mutation	DNP	CG	TCGA-64-5781-01A-01D-1625-08	885451	106959779	28574968	1350	153760											
SORCS1	114815	broad.mit.edu	37	chr10	108366972	108366972	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctccagctggatcctgAtagggtaggacaaagagttc	11	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108366972	G	G	108366972	2	3	191	1	0	0	0	0	0	0	0	1	15044	340	12	5		5	SORCS1	10	108366972	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	1407193	108366972	27167775	1351	153761											
SORCS1	114815	broad.mit.edu	37	chr10	108434727	108434727	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaacctaacagctgcaaatCaaacaggcttagctataaaa	6	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108434727	A	A	108434727	1	1	191	0	1	0	0	0	0	0	0	0	15044	841	29	3		3	SORCS1	10	108434727	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	67755	108434727	27100020	1352	153762											
SORCS1	114815	broad.mit.edu	37	chr10	108438988	108438988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatgttacttaaacttcagCgatttgacccagggtatttt	7	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108438988	A	A	108438988	1	1	191	0	1	0	0	0	0	0	0	0	15044	783	27	3		3	SORCS1	10	108438988	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4261	108438988	27095759	1353	153763											
SORCS1	114815	broad.mit.edu	37	chr10	108923870	108923870	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgctcccgagtcccaggctCctgctgccctccatctctta	7	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108923870	A	A	108923870	4	1	191	1	0	0	0	0	0	1	0	0	15044	864	30	3	3429	3	SORCS1	10	108923870	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	484882	108923870	26610877	1354	153764											
DCLRE1A	9937	broad.mit.edu	37	chr10	115602144	115602144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagagtaagtgccacagaCaacaagagcatgtgggttta	11	6	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115602144	A	A	115602144	3	1	191	1	0	0	0	0	1	0	0	0	4327	478	17	3	515	3	DCLRE1A	10	115602144	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6678274	115602144	19932603	1355	153765											
GFRA1	2674	broad.mit.edu	37	chr10	117849235	117849235	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggagccccagcaaggaatCtggacgcagttctcacctgt	12	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117849235	A	A	117849235	1	1	191	0	1	0	0	0	0	0	0	0	6411	928	32	3		3	GFRA1	10	117849235	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2247091	117849235	17685512	1356	153766											
C10orf96	374355	broad.mit.edu	37	chr10	118137885	118137885	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctctctgtgcagtaataCaattacagtttattattaaa	4	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118137885	A	A	118137885	1	1	191	0	1	0	0	0	0	0	0	0	1638	493	17	3		3	C10orf96	10	118137885	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	288650	118137885	17396862	1357	153767											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118220556	118220556	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcggatgccaactttgttgAcgttattcatacaaatgcag	8	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118220556	T	T	118220556	3	4	191	1	0	0	0	0	1	0	0	0	12247	275	10	5	666	5	PNLIPRP3	10	118220556	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	82671	118220556	17314191	1358	153768											
PNLIP	5406	broad.mit.edu	37	chr10	118307692	118307692	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaatggcaaacatgttGtgatgactgggaaatggcaa	12	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118307692	A	A	118307692	1	1	191	0	1	0	0	0	0	0	0	0	12244	1392	48	4		4	PNLIP	10	118307692	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	87136	118307692	17227055	1359	153769											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118355853	118355853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaaggccccagaggcagGgccccagttttgtccccaga	13	13	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118355853	T	T	118355853	1	4	191	0	1	0	0	0	0	0	0	0	12245	1247	43	2		2	PNLIPRP1	10	118355853	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	48161	118355853	17178894	1360	153770											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118364829	118364829	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctagaagagaaaacagcAgcctggcattgtatggtaat	10	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118364829	G	G	118364829	1	3	191	0	1	0	0	0	0	0	0	0	12245	203	7	5		5	PNLIPRP1	10	118364829	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	8976	118364829	17169918	1361	153771											
PRLHR	2834	broad.mit.edu	37	chr10	120353854	120353854	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcgtgggggtcgaggtcCcgcagcaggttgaagacgtg	19	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120353854	A	A	120353854	2	1	191	1	0	0	0	0	0	0	0	1	12636	610	22	2		2	PRLHR	10	120353854	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1989025	120353854	15180893	1362	153772											
NANOS1	340719	broad.mit.edu	37	chr10	120790054	120790054	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccgtgctgcgccgctaCacgtgtcccctgtgcggcgc	13	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120790054	A	A	120790054	4	1	191	1	0	0	0	0	0	1	0	0	10245	489	17	3	743	3	NANOS1	10	120790054	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	436200	120790054	14744693	1363	153773											
FGFR2	2263	broad.mit.edu	37	chr10	123274659	123274659	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtctccgcagggggatacgtTtggtcagcttgtgcacagcc	14	11	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123274659	A	A	123274659	3	1	191	1	0	0	0	0	1	0	0	0	5923	1841	64	5	1350	5	FGFR2	10	123274659	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2484605	123274659	12260088	1364	153774											
TACC2	10579	broad.mit.edu	37	chr10	123843657	123843657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgccagagggccaccgGggccaacggatggagccaag	16	11	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123843657	T	T	123843657	3	4	191	1	0	0	0	0	1	0	0	0	15621	1232	43	2	1652	2	TACC2	10	123843657	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	568998	123843657	11691090	1365	153775											
C10orf88	80007	broad.mit.edu	37	chr10	124712588	124712588	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaacatcacacagtatagttCtctgaacatgactcttcttt	4	10	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124712588	T	T	124712588	1	4	191	0	1	0	0	0	0	0	0	0	1633	928	32	4		4	C10orf88	10	124712588	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	868931	124712588	10822159	1366	153776											
PSTK	118672	broad.mit.edu	37	chr10	124740113	124740113	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttcgcgcgcgccctcgccCaccggctgcagcaggagcag	13	18	0	0	rs142993778	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124740113	G	G	124740113	3	3	191	1	0	0	0	0	1	0	0	0	12826	594	21	4	120	4	PSTK	10	124740113	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	27525	124740113	10794634	1367	153777											
FAM53B	9679	broad.mit.edu	37	chr10	126395118	126395118	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactctggactcgatttgcTaagcttaggtgctcagtcca	11	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126395118	A	A	126395118	1	1	191	0	1	0	0	0	0	0	0	0	5631	1537	53	5		5	FAM53B	10	126395118	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1655005	126395118	9139629	1368	153778											
JAKMIP3	282973	broad.mit.edu	37	chr10	133967450	133967450	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcagaagggctacctggacGaggagctggactaccggaaa	15	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133967450	T	T	133967450	4	4	191	1	0	0	0	0	0	1	0	0	8012	1059	37	3	2240	3	JAKMIP3	10	133967450	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	7572332	133967450	1567297	1369	153779											
DPYSL4	10570	broad.mit.edu	37	chr10	134010260	134010260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgagggaagcactgcgggGgaggggcccaagacccccaa	17	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134010260	T	T	134010260	1	4	191	0	1	0	0	0	0	0	0	0	4789	1247	43	2		2	DPYSL4	10	134010260	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	42810	134010260	1524487	1370	153780											
VENTX	27287	broad.mit.edu	37	chr10	135051581	135051581	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggccagacatccggcgccCgggagccccctcaggccgtc	13	19	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135051581	A	A	135051581	2	1	191	1	0	0	0	0	0	0	0	1	17280	643	23	1		1	VENTX	10	135051581	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1041321	135051581	483166	1371	153781											
CYP2E1	1571	broad.mit.edu	37	chr10	135346316	135346316	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaggagcaccatcaatctCtggaccccaactgtccccgg	9	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135346316	G	G	135346316	3	3	191	1	0	0	0	0	1	0	0	0	4203	912	32	4	787	4	CYP2E1	10	135346316	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	294735	135346316	188431	1372	153782											
SYCE1	93426	broad.mit.edu	37	chr10	135369516	135369516	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgctccttgctgctgtcCagggcacaaatctcctttgc	9	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135369516	T	T	135369516	2	4	191	1	0	0	0	0	0	0	0	1	15546	581	21	4		4	SYCE1	10	135369516	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	23200	135369516	165231	1373	153783											
MUC2	4583	broad.mit.edu	37	chr11	1095202	1095202	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcactgagctgtacgttgGagttctataactggtcctgc	11	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1095202	T	T	1095202	4	4	191	1	0	0	0	0	0	1	0	0	10069	1175	41	3	6140	3	MUC2	11	1095202	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08		1095202	133911314	1374	153784											
MUC5B	727897	broad.mit.edu	37	chr11	1221953	1221953	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactgccgccctcctgacctCcaaggagaacctcccatatg	7	18	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1221953	A	A	1221953	1	1	191	0	1	0	0	0	0	0	0	0	10073	870	30	3		3	MUC5B	11	1221953	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	126751	1221953	133784563	1375	153785											
MUC5B	727897	broad.mit.edu	37	chr11	1274101	1274101	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcgtgggtgacaaccgtgtCgtcctgctggacccaaagcc	13	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1274101	A	A	1274101	2	1	191	1	0	0	0	0	0	0	0	1	10073	871	31	3		3	MUC5B	11	1274101	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	52148	1274101	133732415	1376	153786											
CDKN1C	1028	broad.mit.edu	37	chr11	2905952	2905952	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcgccgttggcgctggcGgccgcggtgccggccgcggg	21	16	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2905952	A	A	2905952	2	1	191	1	0	0	0	0	0	0	0	1	3190	1103	39	4		4	CDKN1C	11	2905952	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1631851	2905952	132100564	1377	153787											
OR51L1	119682	broad.mit.edu	37	chr11	5020211	5020211	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaattactcaaagtcaCtatgggagactggaataaca	9	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5020211	T	T	5020211	1	4	191	0	1	0	0	0	0	0	0	0	11196	580	20	4		4	OR51L1	11	5020211	5'Flank	SNP	C	TCGA-64-5781-01A-01D-1625-08	2114259	5020211	129986305	1378	153788											
OR51L1	119682	broad.mit.edu	37	chr11	5021140	5021140	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggaattctccacaagtttGtcctaaggaggaggttttaa	10	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5021140	C	C	5021140	3	2	191	1	0	0	0	0	1	0	0	0	11196	1377	48	4	930	4	OR51L1	11	5021140	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	929	5021140	129985376	1379	153789											
OR52J3	119679	broad.mit.edu	37	chr11	5067999	5067999	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttctacaacctctgtgcctCgcatgctgggtatcttctgg	9	12	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5067999	T	T	5067999	3	4	191	1	0	0	0	0	1	0	0	0	11216	884	31	4	246	4	OR52J3	11	5067999	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	46859	5067999	129938517	1380	153790											
OR51V1	283111	broad.mit.edu	37	chr11	5221366	5221366	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggagaagatcctggtgcaGgcagaaagagtgagaaagga	17	5	0	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5221366	T	T	5221366	3	4	191	1	0	0	0	0	1	0	0	0	11201	991	35	2	403	2	OR51V1	11	5221366	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	153367	5221366	129785150	1381	153791											
OR51B4	79339	broad.mit.edu	37	chr11	5322666	5322666	+	Frame_Shift_Del	DEL	G	-	-													gaggcaaaatgtgtgcaagaGggcacgggaaccacaatatg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5322666	-	-	5322666	7	5	191	1	0	1	0	1	0	0	0	0	11184	1000	35	0	424	0	OR51B4	11	5322666	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	101300	5322666	129683850	1382	153792											
OR52L1	338751	broad.mit.edu	37	chr11	6007960	6007960	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaaggatgggtccatccaGatgatgaagagaatggtaac	13	6	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6007960	T	T	6007960	2	4	191	1	0	0	0	0	0	0	0	1	11219	932	33	3		3	OR52L1	11	6007960	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	685294	6007960	128998556	1383	153793											
OR52L1	338751	broad.mit.edu	37	chr11	6008099	6008099	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgggatagcctccagcttGaattgctaaggagcattatc	11	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6008099	C	C	6008099	4	2	191	1	0	0	0	0	0	1	0	0	11219	1294	45	4	931	4	OR52L1	11	6008099	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	139	6008099	128998417	1384	153794											
CNGA4	1262	broad.mit.edu	37	chr11	6263036	6263036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcccagtatttgttccagGgacaaggatgggtggggtag	15	6	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6263036	T	T	6263036	1	4	191	0	1	0	0	0	0	0	0	0	3631	1247	43	2		2	CNGA4	11	6263036	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	254937	6263036	128743480	1385	153795											
TRIM3	10612	broad.mit.edu	37	chr11	6472661	6472661	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acttgaactggccctcattgGagaaaacctggagcagagga	12	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6472661	C	C	6472661	3	2	191	1	0	0	0	0	1	0	0	0	16628	1174	41	4	713	4	TRIM3	11	6472661	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	209625	6472661	128533855	1386	153796											
OR10A4	283297	broad.mit.edu	37	chr11	6898719	6898719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtcactctcttccacaGtggtgactcccatgttgaac	8	13	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6898719	T	T	6898719	3	4	191	1	0	0	0	0	1	0	0	0	10986	1029	36	3	843	3	OR10A4	11	6898719	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	426058	6898719	128107797	1387	153797											
OR2D2	120776	broad.mit.edu	37	chr11	6913787	6913787	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctaaccatagacaggcataCctataaaattatataattca	4	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6913787	T	T	6913787	1	4	191	0	1	0	0	0	0	0	0	0	11088	522	18	4		4	OR2D2	11	6913787	5'Flank	SNP	C	TCGA-64-5781-01A-01D-1625-08	15068	6913787	128092729	1388	153798											
ZNF215	7762	broad.mit.edu	37	chr11	6953714	6953714	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagccctgagccaactctggGagctctgtcttcaatggctg	11	12	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6953714	T	T	6953714	4	4	191	1	0	0	0	0	0	1	0	0	17897	1175	41	3	213	3	ZNF215	11	6953714	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	39927	6953714	128052802	1389	153799											
ZNF215	7762	broad.mit.edu	37	chr11	6962865	6962865	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagaaaatgaaagctggctCacgaacaggcaaaccacagg	12	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6962865	G	G	6962865	4	3	191	1	0	0	0	0	0	1	0	0	17897	838	29	4	470	4	ZNF215	11	6962865	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	9151	6962865	128043651	1390	153800											
NLRP14	338323	broad.mit.edu	37	chr11	7063578	7063578	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatttgttttgatcatgtGtctttgtttttgttttttta	7	2	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7063578	A	A	7063578	1	1	191	0	1	0	0	0	0	0	0	0	10571	1392	48	4		4	NLRP14	11	7063578	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	100713	7063578	127942938	1391	153801											
OR5P3	120066	broad.mit.edu	37	chr11	7847327	7847327	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtctacaaaggccaaatGgcagaggaaaatgtacatgg	11	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7847327	A	A	7847327	3	1	191	1	0	0	0	0	1	0	0	0	11273	1348	47	4	745	4	OR5P3	11	7847327	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	783749	7847327	127159189	1392	153802											
NLRP10	338322	broad.mit.edu	37	chr11	7981665	7981665	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctcctttacctccagCagcctttgcacttctctgcg	6	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7981665	G	G	7981665	2	3	191	1	0	0	0	0	0	0	0	1	10567	697	25	4		4	NLRP10	11	7981665	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	134338	7981665	127024851	1393	153803											
LYVE1	10894	broad.mit.edu	37	chr11	10589895	10589895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaattagacctgctgttgaCactgagggtcaccctcattc	8	13	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10589895	T	T	10589895	1	4	191	0	1	0	0	0	0	0	0	0	9217	493	17	4		4	LYVE1	11	10589895	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2608230	10589895	124416621	1394	153804											
BTBD10	84280	broad.mit.edu	37	chr11	13427269	13427269	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaatcaaccacatcatcatCtgtaagcaccactatatgac	3	14	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13427269	T	T	13427269	3	4	191	1	0	0	0	0	1	0	0	0	1547	913	32	4	496	4	BTBD10	11	13427269	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2837374	13427269	121579247	1395	153805											
INSC	387755	broad.mit.edu	37	chr11	15260577	15260577	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagtgaccctggctcgtctCagccgagacccagatgtggc	13	14	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15260577	T	T	15260577	2	4	191	1	0	0	0	0	0	0	0	1	7834	813	29	4		4	INSC	11	15260577	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1833308	15260577	119745939	1396	153806											
PIK3C2A	5286	broad.mit.edu	37	chr11	17167339	17167339	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaaaatgattgttttcatCaccaaaataagtgtatttgc	5	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17167339	G	G	17167339	1	3	191	0	1	0	0	0	0	0	0	0	12004	841	29	4		4	PIK3C2A	11	17167339	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1906762	17167339	117839177	1397	153807											
ABCC8	6833	broad.mit.edu	37	chr11	17474562	17474562	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcaacaaaaaataaatttAcagcagaattattcttgagt	7	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17474562	T	T	17474562	1	4	191	0	1	0	0	0	0	0	0	0	58	406	14	5		5	ABCC8	11	17474562	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	307223	17474562	117531954	1398	153808											
ZDHHC13	54503	broad.mit.edu	37	chr11	19184859	19184859	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggctttaacatttagcagGagcccctttctatttcagtt	7	9	2	0	rs115205445	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19184859	T	T	19184859	3	4	191	1	0	0	0	0	1	0	0	0	17729	1174	41	3	1160	3	ZDHHC13	11	19184859	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1710297	19184859	115821657	1399	153809											
SLC17A6	57084	broad.mit.edu	37	chr11	22364938	22364938	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgccaggcgggactggggctCggggcgtggtgtttgtttcc	19	10	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22364938	A	A	22364938	1	1	191	0	1	0	0	0	0	0	0	0	14534	899	31	3		3	SLC17A6	11	22364938	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3180079	22364938	112641578	1400	153810											
MUC15	143662	broad.mit.edu	37	chr11	26586719	26586719	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttatatttacctttttgGggatctgacgtatttggaaa	8	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26586719	T	T	26586719	2	4	191	1	0	0	0	0	0	0	0	1	10066	1219	43	2		2	MUC15	11	26586719	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	4221781	26586719	108419797	1401	153811											
PAX6	5080	broad.mit.edu	37	chr11	31816191	31816191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcacctttctccagggcCtcaatttgctcttgggtaaa	7	12	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31816191	A	A	31816191	3	1	191	1	0	0	0	0	1	0	0	0	11577	680	24	2	623	2	PAX6	11	31816191	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5229472	31816191	103190325	1402	153812											
WT1	7490	broad.mit.edu	37	chr11	32413565	32413565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcttcaggtggtcggacCgggagaactttcgctgacaa	15	9	2	2	rs121907903		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32413565	A	A	32413565	3	1	191	1	0	0	0	0	1	0	0	0	17535	652	23	1	176	1	WT1	11	32413565	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	597374	32413565	102592951	1403	153813											
CCDC73	493860	broad.mit.edu	37	chr11	32739563	32739563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgacacgtgggggttacgGggattacaattcaagatgag	14	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32739563	T	T	32739563	1	4	191	0	1	0	0	0	0	0	0	0	2874	1247	43	2		2	CCDC73	11	32739563	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	325998	32739563	102266953	1404	153814											
PAMR1	25891	broad.mit.edu	37	chr11	35456397	35456397	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagataaactcagactttgcCatccaaaggagaatgtgtca	8	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35456397	T	T	35456397	1	4	191	0	1	0	0	0	0	0	0	0	11507	609	21	4		4	PAMR1	11	35456397	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2716834	35456397	99550119	1405	153815											
OR4C13	283092	broad.mit.edu	37	chr11	49974659	49974659	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttaaagacccacagcttaGaggcaaggcacgaagccctc	9	14	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49974659	C	C	49974659	3	2	191	1	0	0	0	0	1	0	0	0	11141	943	33	4	687	4	OR4C13	11	49974659	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	14518262	49974659	85031857	1406	153816											
OR4A16	81327	broad.mit.edu	37	chr11	55111467	55111467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacccgtttccaactttcCctttgataaattaatgactg	5	10	0	3	rs138375517		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55111467	A	A	55111467	3	1	191	1	0	0	0	0	1	0	0	0	11135	623	22	2	793	2	OR4A16	11	55111467	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5136808	55111467	79895049	1407	153817											
OR4C16	219428	broad.mit.edu	37	chr11	55339944	55339944	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggagatcttcatcctcaTcctcacggctgttgaccgct	8	15	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55339944	A	A	55339944	3	1	191	1	0	0	0	0	1	0	0	0	11143	1435	50	5	343	5	OR4C16	11	55339944	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	228477	55339944	79666572	1408	153818											
OR4S2	219431	broad.mit.edu	37	chr11	55418981	55418981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgttgtgacagccaacaGtggtaccattgctctgggga	13	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55418981	T	T	55418981	3	4	191	1	0	0	0	0	1	0	0	0	11177	1029	36	3	604	3	OR4S2	11	55418981	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	79037	55418981	79587535	1409	153819											
OR4C6	219432	broad.mit.edu	37	chr11	55433423	55433423	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtacatgaggcctgtgGtcactcaccccatagacaag	9	12	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55433423	C	C	55433423	3	2	191	1	0	0	0	0	1	0	0	0	11146	1261	44	4	783	4	OR4C6	11	55433423	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	14442	55433423	79573093	1410	153820											
OR5L1	219437	broad.mit.edu	37	chr11	55579049	55579049	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgttccttctcatctatgGagtcacgttgttagccaacc	8	12	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579049	A	A	55579049	3	1	191	1	0	0	0	0	1	0	0	0	11264	1174	41	4	109	4	OR5L1	11	55579049	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	145626	55579049	79427467	1411	153821											
OR5L2	26338	broad.mit.edu	37	chr11	55595543	55595543	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctacacagttgtgattccCatgctgaaccccctgatcta	6	13	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55595543	A	A	55595543	2	1	191	1	0	0	0	0	0	0	0	1	11265	581	21	2		2	OR5L2	11	55595543	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	16494	55595543	79410973	1412	153822											
SPRYD5	84767	broad.mit.edu	37	chr11	55652819	55652819	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcactgtcaagaagaaaaTatagctatcacatatcacca	6	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55652819	C	C	55652819	1	2	191	0	1	0	0	0	0	0	0	0	15229	1421	49	5		5	SPRYD5	11	55652819	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	57276	55652819	79353697	1413	153823											
OR5I1	10798	broad.mit.edu	37	chr11	55703324	55703324	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaggatagtttaagcagggGagggaggtcacagaaaaaat	15	4	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55703324	C	C	55703324	3	2	191	1	0	0	0	0	1	0	0	0	11258	1174	41	4	394	4	OR5I1	11	55703324	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	50505	55703324	79303192	1414	153824											
OR5F1	338674	broad.mit.edu	37	chr11	55761413	55761413	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctgtgcctcccctcccccGaatgcatagaaaaaatggag	8	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55761413	T	T	55761413	4	4	191	1	0	0	0	0	0	1	0	0	11252	1059	37	3	258	3	OR5F1	11	55761413	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	58089	55761413	79245103	1415	153825											
OR8H2	390151	broad.mit.edu	37	chr11	55872935	55872935	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagttattatgtccaaaagGctctgcctcgctctcatcac	6	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55872935	C	C	55872935	3	2	191	1	0	0	0	0	1	0	0	0	11332	1194	42	4	419	4	OR8H2	11	55872935	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	111522	55872935	79133581	1416	153826											
OR8H3	390152	broad.mit.edu	37	chr11	55890265	55890265	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagttattatgcccaaaagGctctgcctcgctctcatcac	6	14	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55890265	C	C	55890265	3	2	191	1	0	0	0	0	1	0	0	0	11333	1194	42	4	419	4	OR8H3	11	55890265	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	17330	55890265	79116251	1417	153827											
OR5J2	282775	broad.mit.edu	37	chr11	55944482	55944482	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggccattgtgagtccctTgctttacactgtagccatgt	10	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944482	A	A	55944482	4	1	191	1	0	0	0	0	0	1	0	0	11259	1821	63	5	391	5	OR5J2	11	55944482	Nonsense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	54217	55944482	79062034	1418	153828											
OR5T2	219464	broad.mit.edu	37	chr11	56000334	56000334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aataactgaggaatagcaggCatccacagaagacaacatac	8	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56000334	T	T	56000334	3	4	191	1	0	0	0	0	1	0	0	0	11276	710	25	4	750	4	OR5T2	11	56000334	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	55852	56000334	79006182	1419	153829											
OR8K3	219473	broad.mit.edu	37	chr11	56086209	56086209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcacgaagggtatgtcagGtgctggtagcaatcccttac	12	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56086209	T	T	56086209	3	4	191	1	0	0	0	0	1	0	0	0	11338	1261	44	3	429	3	OR8K3	11	56086209	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	85875	56086209	78920307	1420	153830											
OR5R1	219479	broad.mit.edu	37	chr11	56185388	56185388	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaaacactcagtgatcatGaaggtgagaaaacaacccag	10	8	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56185388	A	A	56185388	2	1	191	1	0	0	0	0	0	0	0	1	11274	1281	45	4		4	OR5R1	11	56185388	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	99179	56185388	78821128	1421	153831											
OR9G4	283189	broad.mit.edu	37	chr11	56510984	56510984	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgcgcttatcttctgAgacacaactggccaggattt	10	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56510984	T	T	56510984	3	4	191	1	0	0	0	0	1	0	0	0	11345	304	11	5	682	5	OR9G4	11	56510984	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	325596	56510984	78495532	1422	153832											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57069468	57069468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcacacccagactccCcgaacccataacccctgcaa	6	19	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57069468	A	A	57069468	1	1	191	0	1	0	0	0	0	0	0	0	16443	638	22	2		2	TNKS1BP1	11	57069468	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	558484	57069468	77937048	1423	153833											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57077513	57077513	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cataagcacccagagaatctCtcttcccaaattcccagtcc	4	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57077513	A	A	57077513	3	1	191	1	0	0	0	0	1	0	0	0	16443	913	32	3	2541	3	TNKS1BP1	11	57077513	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	8045	57077513	77929003	1424	153834											
P2RX3	5024	broad.mit.edu	37	chr11	57114202	57114202	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggatgtccagacactgggcAggttggaagggagaaagcga	17	6	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57114202	T	T	57114202	1	4	191	0	1	0	0	0	0	0	0	0	11435	203	7	5		5	P2RX3	11	57114202	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	36689	57114202	77892314	1425	153835											
SERPING1	710	broad.mit.edu	37	chr11	57367360	57367360	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaaccacaggatagagcCtcctcaaatccaaatgctac	6	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57367360	A	A	57367360	2	1	191	1	0	0	0	0	0	0	0	1	14229	668	24	2		2	SERPING1	11	57367360	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	253158	57367360	77639156	1426	153836											
OR6Q1	219952	broad.mit.edu	37	chr11	57799225	57799225	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatgtatgtccagaccaaGgtgacctcctccatcaactt	6	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57799225	T	T	57799225	3	4	191	1	0	0	0	0	1	0	0	0	11302	991	35	2	803	2	OR6Q1	11	57799225	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	431865	57799225	77207291	1427	153837											
GLYATL2	219970	broad.mit.edu	37	chr11	58605904	58605904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatatagagtcttatatGtggagaaataagacatgaca	8	5	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58605904	T	T	58605904	1	4	191	0	1	0	0	0	0	0	0	0	6545	1392	48	3		3	GLYATL2	11	58605904	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	806679	58605904	76400612	1428	153838											
OR5A1	219982	broad.mit.edu	37	chr11	59210995	59210995	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtctgagtgcctcctcctGactgctatggcatacgaccg	10	14	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59210995	T	T	59210995	2	4	191	1	0	0	0	0	0	0	0	1	11233	1277	45	3		3	OR5A1	11	59210995	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	605091	59210995	75795521	1429	153839											
OR4D11	219986	broad.mit.edu	37	chr11	59271184	59271184	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggaaacctcctcatcAtggtcaccgtgacctgtgag	11	12	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59271184	T	T	59271184	3	4	191	1	0	0	0	0	1	0	0	0	11149	217	8	5	138	5	OR4D11	11	59271184	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	60189	59271184	75735332	1430	153840											
PLAC1L	219990	broad.mit.edu	37	chr11	59814632	59814632	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagcaaaaatatagttgGtgtatatctctccttaagtc	6	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59814632	T	T	59814632	1	4	191	0	1	0	0	0	0	0	0	0	12108	1276	44	3		3	PLAC1L	11	59814632	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	543448	59814632	75191884	1431	153841											
MS4A14	84689	broad.mit.edu	37	chr11	60164175	60164175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggattttctgaagggagagCcaagagtcttgggggtaagt	16	4	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60164175	A	A	60164175	3	1	191	1	0	0	0	0	1	0	0	0	9952	739	26	3	126	3	MS4A14	11	60164175	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	349543	60164175	74842341	1432	153842											
MS4A13	503497	broad.mit.edu	37	chr11	60296947	60296947	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatttggtaagtgtttaccCactctctggcaaatcaaaag	7	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60296947	A	A	60296947	1	1	191	0	1	0	0	0	0	0	0	0	9951	609	21	2		2	MS4A13	11	60296947	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	132772	60296947	74709569	1433	153843											
CD6	923	broad.mit.edu	37	chr11	60739346	60739346	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagctccagacatgtggctCttcttcgggatcactggatt	10	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60739346	A	A	60739346	2	1	191	1	0	0	0	0	0	0	0	1	3058	900	32	3		3	CD6	11	60739346	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	442399	60739346	74267170	1434	153844											
CD5	921	broad.mit.edu	37	chr11	60890252	60890253	+	Intron	DNP	CC	AA	AA													gccaaatagatcattgccttCcgtgcatgctggtgaatttc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	60890253	AA	AA	60890252	1	1	191	0	1	0	0	0	0	0	0	0	3051	870	30	3		3	CD5	11	60890252	Intron	DNP	CC	TCGA-64-5781-01A-01D-1625-08	150906	60890252	74116264	1435	153845											
C11orf66	220004	broad.mit.edu	37	chr11	61254452	61254452	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcccagaacccagcagcgtGagtcaccagcagtttcagcc	10	15	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61254452	C	C	61254452	2	2	191	1	0	0	0	0	0	0	0	1	1668	1277	45	4		4	C11orf66	11	61254452	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	364200	61254452	73752064	1436	153846											
AHNAK	79026	broad.mit.edu	37	chr11	62287559	62287559	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaccttgggcatcttcaggTgccagtctgggccatgaaca	11	12	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62287559	A	A	62287559	3	1	191	1	0	0	0	0	1	0	0	0	414	1696	59	5	3462	5	AHNAK	11	62287559	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1033107	62287559	72718957	1437	153847											
AHNAK	79026	broad.mit.edu	37	chr11	62301100	62301100	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccacccaagtccaagccCtttgcattgacattgacacc	6	16	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62301100	A	A	62301100	3	1	191	1	0	0	0	0	1	0	0	0	414	680	24	2	17003	2	AHNAK	11	62301100	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	13541	62301100	72705416	1438	153848											
EML3	256364	broad.mit.edu	37	chr11	62378705	62378705	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggggctgggggtccattgctCaggccagggggtccagggga	21	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62378705	T	T	62378705	2	4	191	1	0	0	0	0	0	0	0	1	5140	813	29	4		4	EML3	11	62378705	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	77605	62378705	72627811	1439	153849											
GANAB	23193	broad.mit.edu	37	chr11	62394443	62394443	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtaagataccggatcactCagtgcacaggggtcccgtcc	12	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62394443	A	A	62394443	1	1	191	0	1	0	0	0	0	0	0	0	6295	841	29	3		3	GANAB	11	62394443	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	15738	62394443	72612073	1440	153850											
GANAB	23193	broad.mit.edu	37	chr11	62396218	62396218	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccacctcagcccactcttCacagcccaagtgaatgcctc	6	18	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62396218	T	T	62396218	1	4	191	0	1	0	0	0	0	0	0	0	6295	841	29	4		4	GANAB	11	62396218	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1775	62396218	72610298	1441	153851											
GANAB	23193	broad.mit.edu	37	chr11	62400518	62400518	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgtctgcatgctcagggatCccatagacatgctccatgcc	9	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62400518	T	T	62400518	2	4	191	1	0	0	0	0	0	0	0	1	6295	842	30	4		4	GANAB	11	62400518	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	4300	62400518	72605998	1442	153852											
GANAB	23193	broad.mit.edu	37	chr11	62400850	62400850	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagactaagttcaagtttctCatgggcctctcccctccacc	7	15	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62400850	T	T	62400850	1	4	191	0	1	0	0	0	0	0	0	0	6295	841	29	4		4	GANAB	11	62400850	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	332	62400850	72605666	1443	153853											
GANAB	23193	broad.mit.edu	37	chr11	62402453	62402453	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taactccacactgttctcatCacgaccagagacagaaagcc	6	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62402453	T	T	62402453	3	4	191	1	0	0	0	0	1	0	0	0	6295	826	29	4	2584	4	GANAB	11	62402453	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1603	62402453	72604063	1444	153854											
GANAB	23193	broad.mit.edu	37	chr11	62406812	62406812	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccccacccccaccagactCttccttgtctctcctgacct	4	21	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62406812	A	A	62406812	1	1	191	0	1	0	0	0	0	0	0	0	6295	928	32	3		3	GANAB	11	62406812	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4359	62406812	72599704	1445	153855											
INTS5	80789	broad.mit.edu	37	chr11	62415445	62415445	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacttgcccaccaaacagttCtgtgttgcctcgatgtaagg	9	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62415445	T	T	62415445	3	4	191	1	0	0	0	0	1	0	0	0	7851	922	32	4	956	4	INTS5	11	62415445	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	8633	62415445	72591071	1446	153856											
INTS5	80789	broad.mit.edu	37	chr11	62415784	62415784	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctagggctgcagggccctCgccaccctgctgttcccacc	10	20	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62415784	T	T	62415784	3	4	191	1	0	0	0	0	1	0	0	0	7851	893	31	4	1295	4	INTS5	11	62415784	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	339	62415784	72590732	1447	153857											
METTL12	751071	broad.mit.edu	37	chr11	62434555	62434555	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagtcctgaccctagtatttCtgtgggcaaggagagggctg	14	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62434555	T	T	62434555	1	4	191	0	1	0	0	0	0	0	0	0	9589	928	32	4		4	METTL12	11	62434555	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	18771	62434555	72571961	1448	153858			1	116		11	10	11624	N	T_C	3.337143e-07
C11orf83	790955	broad.mit.edu	37	chr11	62439292	62439292	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcgtgggctacgcgctcctCgttatcgtgaccccgggaga	15	13	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62439292	T	T	62439292	2	4	191	1	0	0	0	0	0	0	0	1	1678	871	31	4		4	C11orf83	11	62439292	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	4737	62439292	72567224	1449	153859			1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62444224	62444224	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctttgcatccctccttttCctaggcatgcctccctactc	4	18	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62444224	A	A	62444224	1	1	191	0	1	0	0	0	0	0	0	0	17037	855	30	3		3	UBXN1	11	62444224	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4932	62444224	72562292	1450	153860			1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62444240	62444240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctaggcatgcctcccTactcccccagtttctagtcc	5	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62444240	A	A	62444240	1	1	191	0	1	0	0	0	0	0	0	0	17037	1521	53	5		5	UBXN1	11	62444240	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	16	62444240	72562276	1451	153861			1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62444306	62444306	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagctcctgcagaggccgctCcatgtcagcttctgagaagg	12	13	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62444306	G	G	62444306	3	3	191	1	0	0	0	0	1	0	0	0	17037	864	30	4	119	4	UBXN1	11	62444306	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	66	62444306	72562210	1452	153862			1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62444318	62444318	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggccgctccatgtcagcttCtgagaaggcccgtctgggga	14	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62444318	A	A	62444318	4	1	191	1	0	0	0	0	0	1	0	0	17037	922	32	3	131	3	UBXN1	11	62444318	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	12	62444318	72562198	1453	153863			1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62445457	62445457	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcagcagcccggcgcatctCatcttcctgtagccgctgtc	9	17	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62445457	T	T	62445457	3	4	191	1	0	0	0	0	1	0	0	0	17037	835	29	4	530	4	UBXN1	11	62445457	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1139	62445457	72561059	1454	153864			1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62445970	62445970	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaccctcagtcaggaccttCaaggccgccttgctctgagg	12	14	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62445970	G	G	62445970	3	3	191	1	0	0	0	0	1	0	0	0	17037	835	29	4	745	4	UBXN1	11	62445970	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	513	62445970	72560546	1455	153865			1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62446042	62446042	+	Missense_Mutation	SNP	C	A	A													gggagtctctaaaggctcgtCcacatcggggtcgtcttcgt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62446042	A	A	62446042	3	1	191	1	0	0	0	0	1	0	0	0	17037	855	30	3	817	3	UBXN1	11	62446042	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	72	62446042	72560474	1456	153866	661	2	1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62446048	62446048	+	Missense_Mutation	SNP	C	A	A													ctctaaaggctcgtccacatCggggtcgtcttcgtgctcca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62446048	A	A	62446048	3	1	191	1	0	0	0	0	1	0	0	0	17037	884	31	3	823	3	UBXN1	11	62446048	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6	62446048	72560468	1457	153867	661	2	1	116		11	10	11624	N	T_C	3.337143e-07
UBXN1	51035	broad.mit.edu	37	chr11	62446178	62446178	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttaccagtccatcgcagcctCgatgccctggttccctgtga	9	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62446178	T	T	62446178	3	4	191	1	0	0	0	0	1	0	0	0	17037	893	31	4	869	4	UBXN1	11	62446178	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	130	62446178	72560338	1458	153868			1	116		11	10	11624	N	T_C	3.337143e-07
GNG3	2785	broad.mit.edu	37	chr11	62476249	62476249	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcggagaaccccttccggGagaagaagttcttctgtgct	11	11	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62476249	T	T	62476249	4	4	191	1	0	0	0	0	0	1	0	0	6592	1175	41	3	205	3	GNG3	11	62476249	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	30071	62476249	72530267	1459	153869											
TTC9C	283237	broad.mit.edu	37	chr11	62502894	62502894	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccgtgaactacgaacgagtGagagaatatagtcagaaagt	11	7	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62502894	T	T	62502894	2	4	191	1	0	0	0	0	0	0	0	1	16843	1277	45	3		3	TTC9C	11	62502894	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	26645	62502894	72503622	1460	153870			2	117	56716	3	3	162	G		7.029679e-05
TTC9C	283237	broad.mit.edu	37	chr11	62502931	62502931	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtcctggaacgacagcctGataatgccaaggccttgtat	10	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62502931	C	C	62502931	3	2	191	1	0	0	0	0	1	0	0	0	16843	1290	45	4	322	4	TTC9C	11	62502931	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	37	62502931	72503585	1461	153871			2	117	56716	3	3	162	G		7.029679e-05
TTC9C	283237	broad.mit.edu	37	chr11	62503055	62503055	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtaagcaagaagggctttGaaatggtaaagacaaaattg	12	3	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62503055	C	C	62503055	1	2	191	0	1	0	0	0	0	0	0	0	16843	1305	45	4		4	TTC9C	11	62503055	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	124	62503055	72503461	1462	153872			2	117	56716	3	3	162	G		7.029679e-05
CCDC88B	283234	broad.mit.edu	37	chr11	64119555	64119555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctctcactcgatttccaGccaggggttcctccccagca	8	18	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64119555	T	T	64119555	1	4	191	0	1	0	0	0	0	0	0	0	2892	986	34	3		3	CCDC88B	11	64119555	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1616500	64119555	70886961	1463	153873											
SLC22A12	116085	broad.mit.edu	37	chr11	64360942	64360942	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatgggtacggcagctgCcttcgcccctgccttccccg	12	16	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64360942	A	A	64360942	3	1	191	1	0	0	0	0	1	0	0	0	14556	739	26	3	582	3	SLC22A12	11	64360942	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	241387	64360942	70645574	1464	153874											
SLC22A12	116085	broad.mit.edu	37	chr11	64366241	64366241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaggaggaggtgcctggCgcccccagtgccaacagcac	15	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64366241	A	A	64366241	1	1	191	0	1	0	0	0	0	0	0	0	14556	783	27	3		3	SLC22A12	11	64366241	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	5299	64366241	70640275	1465	153875											
NRXN2	9379	broad.mit.edu	37	chr11	64419599	64419599	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgtcattgagcttgtgcCccgcaaacagcgtttcgggg	12	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64419599	T	T	64419599	3	4	191	1	0	0	0	0	1	0	0	0	10761	623	22	4	3007	4	NRXN2	11	64419599	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	53358	64419599	70586917	1466	153876											
TM7SF2	7108	broad.mit.edu	37	chr11	64883491	64883491	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaggagtactgccggcGtgtgccttaccgcatcatgc	13	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64883491	C	C	64883491	3	2	191	1	0	0	0	0	1	0	0	0	16097	1145	40	4	1261	4	TM7SF2	11	64883491	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	463892	64883491	70123025	1467	153877											
LTBP3	4054	broad.mit.edu	37	chr11	65314867	65314867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccccaggtggagagaCagctaaggagctccttcttt	10	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65314867	A	A	65314867	1	1	191	0	1	0	0	0	0	0	0	0	9162	493	17	3		3	LTBP3	11	65314867	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	431376	65314867	69691649	1468	153878											
SF3B2	10992	broad.mit.edu	37	chr11	65823007	65823007	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgttttcttttttaagcAgggagatcattcgctgaagg	10	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65823007	C	C	65823007	3	2	191	1	0	0	0	0	1	0	0	0	14264	202	7	5	518	5	SF3B2	11	65823007	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	508140	65823007	69183509	1469	153879											
RAB1B	81876	broad.mit.edu	37	chr11	66039310	66039310	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattggcgactcaggcgtGggcaagtcatgcctgctcct	13	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66039310	T	T	66039310	2	4	191	1	0	0	0	0	0	0	0	1	13014	1335	47	2		2	RAB1B	11	66039310	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	216303	66039310	68967206	1470	153880											
B3GNT1	11041	broad.mit.edu	37	chr11	66114503	66114503	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagggcaaactcccccggctCccgggggtcgggcacggctg	16	16	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66114503	A	A	66114503	4	1	191	1	0	0	0	0	0	1	0	0	1261	864	30	3	741	3	B3GNT1	11	66114503	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	75193	66114503	68892013	1471	153881											
ACTN3	89	broad.mit.edu	37	chr11	66328121	66328121	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaggtgccatcatgggcatCcagggtgagatccagaagat	14	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66328121	T	T	66328121	2	4	191	1	0	0	0	0	0	0	0	1	206	845	30	4		4	ACTN3	11	66328121	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	213618	66328121	68678395	1472	153882											
SPTBN2	6712	broad.mit.edu	37	chr11	66483327	66483327	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcccgagagcacctcgaGgagcctcagcaggttgcgtc	12	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66483327	A	A	66483327	3	1	191	1	0	0	0	0	1	0	0	0	15238	1000	35	4	7029	4	SPTBN2	11	66483327	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	155206	66483327	68523189	1473	153883											
C11orf80	79703	broad.mit.edu	37	chr11	66605891	66605891	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcactgaggacgcacctgaTaacagcagcctggagctcct	12	13	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66605891	A	A	66605891	3	1	191	1	0	0	0	0	1	0	0	0	1676	1403	49	5	1780	5	C11orf80	11	66605891	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	122564	66605891	68400625	1474	153884											
PITPNM1	9600	broad.mit.edu	37	chr11	67269818	67269818	+	Frame_Shift_Del	DEL	C	-	-													ttgaagacgtttggctgctgCcccccatcaggcaggtaata							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67269818	-	-	67269818	7	5	191	1	0	1	0	1	0	0	0	0	12045	726	26	0	3458	0	PITPNM1	11	67269818	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	663927	67269818	67736698	1475	153885											
NDUFV1	4723	broad.mit.edu	37	chr11	67379818	67379818	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggatttttggactctgtttCacatggtccccccaccgacc	9	14	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67379818	T	T	67379818	1	4	191	0	1	0	0	0	0	0	0	0	10394	841	29	4		4	NDUFV1	11	67379818	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	110000	67379818	67626698	1476	153886											
LRP5	4041	broad.mit.edu	37	chr11	68157355	68157355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcttctccagcctcatGtactggacagactggggaga	11	11	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68157355	T	T	68157355	3	4	191	1	0	0	0	0	1	0	0	0	9047	1377	48	3	1445	3	LRP5	11	68157355	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	777537	68157355	66849161	1477	153887											
ANKRD42	338699	broad.mit.edu	37	chr11	82938914	82938914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaactcctatgcataaaGgtgagttatgattcctcctt	7	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82938914	T	T	82938914	3	4	191	1	0	0	0	0	1	0	0	0	670	1014	35	2	855	2	ANKRD42	11	82938914	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	14781559	82938914	52067602	1478	153888											
GRM5	2915	broad.mit.edu	37	chr11	88583117	88583117	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctagacccaggcgcctcaTggccatcagcagacctctca	9	17	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88583117	C	C	88583117	3	2	191	1	0	0	0	0	1	0	0	0	6866	1464	51	5	2802	5	GRM5	11	88583117	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	5644203	88583117	46423399	1479	153889											
FOLH1B	219595	broad.mit.edu	37	chr11	89420534	89420534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaaagccctgatgaagGctttgaaggcaaatctcttt	10	8	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89420534	T	T	89420534	3	4	191	1	0	0	0	0	1	0	0	0	6038	1203	42	3	562	3	FOLH1B	11	89420534	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	837417	89420534	45585982	1480	153890											
FOLH1B	219595	broad.mit.edu	37	chr11	89420633	89420633	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaatgaagtttccactAaattcagtgtgggatcgttt	9	5	1	2	rs3018785		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89420633	T	T	89420633	1	4	191	0	1	0	0	0	0	0	0	0	6038	377	13	5		5	FOLH1B	11	89420633	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	99	89420633	45585883	1481	153891											
NAALAD2	10003	broad.mit.edu	37	chr11	89903162	89903162	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttgtttaaaattagaaaAtaaagttagaattaaacaaa	4	2	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89903162	T	T	89903162	1	4	191	0	1	0	0	0	0	0	0	0	10222	116	4	5		5	NAALAD2	11	89903162	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	482529	89903162	45103354	1482	153892											
NAALAD2	10003	broad.mit.edu	37	chr11	89916115	89916115	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaatgatgaatgaccaaCtgatgctcctggaaagagca	11	7	0	6			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89916115	T	T	89916115	2	4	191	1	0	0	0	0	0	0	0	1	10222	564	20	4		4	NAALAD2	11	89916115	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	12953	89916115	45090401	1483	153893											
FAT3	120114	broad.mit.edu	37	chr11	92523468	92523468	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcagaagtatagggccCctaaattttataagtagttg	9	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92523468	A	A	92523468	1	1	191	0	1	0	0	0	0	0	0	0	5748	638	22	2		2	FAT3	11	92523468	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2607353	92523468	42483048	1484	153894											
FAT3	120114	broad.mit.edu	37	chr11	92526085	92526085	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatcagctgttctgcaagtGacggctctggacaaagacaa	12	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92526085	T	T	92526085	2	4	191	1	0	0	0	0	0	0	0	1	5748	1277	45	3		3	FAT3	11	92526085	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2617	92526085	42480431	1485	153895											
MTNR1B	4544	broad.mit.edu	37	chr11	92715442	92715442	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagagcccagctccaccCatcattggtgtgcagcacca	9	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92715442	A	A	92715442	2	1	191	1	0	0	0	0	0	0	0	1	10046	581	21	2		2	MTNR1B	11	92715442	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	189357	92715442	42291074	1486	153896											
GPR83	10888	broad.mit.edu	37	chr11	94113286	94113287	+	3'UTR	DNP	CC	AG	AG													ctgcctcaggtggagacagaCccctcccactccctcttccc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	94113287	AG	AG	94113286	1	1	191	0	1	0	0	0	0	0	0	0	6778	522	18	3		3	GPR83	11	94113286	3'UTR	DNP	CC	TCGA-64-5781-01A-01D-1625-08	1397844	94113286	40893230	1487	153897											
KDM4D	55693	broad.mit.edu	37	chr11	94731714	94731714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcctatggctgcccgcaGtgggacacggtgccacaccc	13	15	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731714	T	T	94731714	3	4	191	1	0	0	0	0	1	0	0	0	8201	1029	36	3	1180	3	KDM4D	11	94731714	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	618428	94731714	40274802	1488	153898											
PGR	5241	broad.mit.edu	37	chr11	100912825	100912825	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtttgacttcgtagcccttCcaaaggaactgttaagaaga	10	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100912825	A	A	100912825	4	1	191	1	0	0	0	0	0	1	0	0	11900	864	30	3	312	3	PGR	11	100912825	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6181111	100912825	34093691	1489	153899											
ANGPTL5	253935	broad.mit.edu	37	chr11	101762183	101762183	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acactcgttaaaccaccagcCggtcttgttatggaggtgac	10	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101762183	G	G	101762183	3	3	191	1	0	0	0	0	1	0	0	0	617	652	23	4	176	4	ANGPTL5	11	101762183	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	849358	101762183	33244333	1490	153900											
ANGPTL5	253935	broad.mit.edu	37	chr11	101762327	101762327	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgagaccccggaatgcatCacctgggaaaaaaattttta	8	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101762327	A	A	101762327	3	1	191	1	0	0	0	0	1	0	0	0	617	826	29	3	320	3	ANGPTL5	11	101762327	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	144	101762327	33244189	1491	153901											
BIRC3	330	broad.mit.edu	37	chr11	102201833	102201838	+	In_Frame_Del	DEL	AAAACA	-	-													ggctttagtagaagcctggtAaaacagacagttcagagaaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102201838	-	-	102201833	7	5	191	1	0	1	0	1	0	0	0	0	1442	349	13	0	1203	0	BIRC3	11	102201833	In_Frame_Del	DEL	AAAACA	TCGA-64-5781-01A-01D-1625-08	439506	102201833	32804683	1492	153902											
BIRC3	330	broad.mit.edu	37	chr11	102201846	102201846	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctggtaaaacagacagttCagagaaaaatcctagcaact	8	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102201846	T	T	102201846	4	4	191	1	0	0	0	0	0	1	0	0	1442	827	29	4	1216	4	BIRC3	11	102201846	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	13	102201846	32804670	1493	153903											
MMP20	9313	broad.mit.edu	37	chr11	102449730	102449730	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaagccaagatttcttatGatagttttcatgaagaaagt	8	5	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102449730	A	A	102449730	1	1	191	0	1	0	0	0	0	0	0	0	9752	1305	45	4		4	MMP20	11	102449730	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	247884	102449730	32556786	1494	153904											
MMP27	64066	broad.mit.edu	37	chr11	102573517	102573517	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtccagttttcatcctcatCaaaatgagtgtcaccaccca	6	13	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102573517	G	G	102573517	3	3	191	1	0	0	0	0	1	0	0	0	9758	826	29	4	983	4	MMP27	11	102573517	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	123787	102573517	32432999	1495	153905											
DYNC2H1	79659	broad.mit.edu	37	chr11	102999623	102999623	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttattaattattactaattgGacttttactttgtaggtggc	7	4	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102999623	T	T	102999623	1	4	191	0	1	0	0	0	0	0	0	0	4886	1189	41	3		3	DYNC2H1	11	102999623	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	426106	102999623	32006893	1496	153906											
DDI1	414301	broad.mit.edu	37	chr11	103908012	103908012	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgctgctctccaacccCcacgatctgtccctgctcaa	6	18	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103908012	A	A	103908012	2	1	191	1	0	0	0	0	0	0	0	1	4361	610	22	2		2	DDI1	11	103908012	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	908389	103908012	31098504	1497	153907											
AASDHPPT	60496	broad.mit.edu	37	chr11	105967474	105967474	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttgtcttttaggttcCatctcaggatgattccaaac	7	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105967474	T	T	105967474	3	4	191	1	0	0	0	0	1	0	0	0	23	594	21	4	792	4	AASDHPPT	11	105967474	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2059462	105967474	29039042	1498	153908											
GUCY1A2	2977	broad.mit.edu	37	chr11	106558347	106558347	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattctcgacgaagaaagAgaaggctttggtggctttgg	13	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106558347	G	G	106558347	2	3	191	1	0	0	0	0	0	0	0	1	6958	291	11	5		5	GUCY1A2	11	106558347	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	590873	106558347	28448169	1499	153909											
GUCY1A2	2977	broad.mit.edu	37	chr11	106579268	106579268	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggctgacattgatgcgcCgagggtgacttcccgactcg	14	11	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106579268	T	T	106579268	3	4	191	1	0	0	0	0	1	0	0	0	6958	652	23	4	245	4	GUCY1A2	11	106579268	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	20921	106579268	28427248	1500	153910											
ELMOD1	55531	broad.mit.edu	37	chr11	107514308	107514308	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagaaaactccattgttcAgttgctgtcatttgagtaca	7	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107514308	T	T	107514308	1	4	191	0	1	0	0	0	0	0	0	0	5110	203	7	5		5	ELMOD1	11	107514308	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	935040	107514308	27492208	1501	153911											
ELMOD1	55531	broad.mit.edu	37	chr11	107535886	107535886	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagacatggcgctgtgccCacattttgctgcctcggaag	11	14	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107535886	A	A	107535886	3	1	191	1	0	0	0	0	1	0	0	0	5110	594	21	2	1010	2	ELMOD1	11	107535886	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	21578	107535886	27470630	1502	153912											
C11orf65	160140	broad.mit.edu	37	chr11	108256708	108256708	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggcaatgtacctaagCacattatatgaggattcatt	8	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108256708	A	A	108256708	1	1	191	0	1	0	0	0	0	0	0	0	1667	725	25	3		3	C11orf65	11	108256708	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	720822	108256708	26749808	1503	153913											
BCO2	83875	broad.mit.edu	37	chr11	112065384	112065384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaatttgcaggtagattgGagcaaatttattgctgtgaa	10	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112065384	T	T	112065384	3	4	191	1	0	0	0	0	1	0	0	0	1390	1183	41	3	660	3	BCO2	11	112065384	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3808676	112065384	22941132	1504	153914											
ANKK1	255239	broad.mit.edu	37	chr11	113264195	113264195	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccatatcttgctccccctCtccatagctctgatgtgaat	5	14	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113264195	T	T	113264195	1	4	191	0	1	0	0	0	0	0	0	0	631	928	32	4		4	ANKK1	11	113264195	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1198811	113264195	21742321	1505	153915											
DRD2	1813	broad.mit.edu	37	chr11	113283382	113283382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttttgccattgggcatgGtctggatctcaaagatcttg	13	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113283382	T	T	113283382	3	4	191	1	0	0	0	0	1	0	0	0	4797	1261	44	3	305	3	DRD2	11	113283382	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	19187	113283382	21723134	1506	153916											
ZW10	9183	broad.mit.edu	37	chr11	113639463	113639463	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaatcagaaaagtgagggTttaaaaagttgtacacaatt	8	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113639463	A	A	113639463	1	1	191	0	1	0	0	0	0	0	0	0	18376	1740	60	5		5	ZW10	11	113639463	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	356081	113639463	21367053	1507	153917											
USP28	57646	broad.mit.edu	37	chr11	113705088	113705088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaaagggattcatagcCtttcctgaaaataactgcag	9	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113705088	A	A	113705088	1	1	191	0	1	0	0	0	0	0	0	0	17185	696	24	2		2	USP28	11	113705088	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	65625	113705088	21301428	1508	153918											
CEP164	22897	broad.mit.edu	37	chr11	117257992	117257992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccatggaagaggcagtgGcccaagtactcgagcaagac	14	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117257992	T	T	117257992	3	4	191	1	0	0	0	0	1	0	0	0	3279	1203	42	3	1848	3	CEP164	11	117257992	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3552904	117257992	17748524	1509	153919											
IL10RA	3587	broad.mit.edu	37	chr11	117859032	117859032	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacctccctttcttctttgGtaaaattggggtcatcaatg	8	9	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117859032	C	C	117859032	1	2	191	0	1	0	0	0	0	0	0	0	7690	1276	44	4		4	IL10RA	11	117859032	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	601040	117859032	17147484	1510	153920											
CD3D	915	broad.mit.edu	37	chr11	118210166	118210166	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcccctcaacgctcacCtgatagacctggtcattcct	5	17	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118210166	G	G	118210166	3	3	191	1	0	0	0	0	1	0	0	0	3040	695	24	4	73	4	CD3D	11	118210166	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	351134	118210166	16796350	1511	153921											
UBE4A	9354	broad.mit.edu	37	chr11	118243415	118243415	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatctgtaagcttctacAttttgattttcagatttaaa	5	6	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118243415	G	G	118243415	1	3	191	0	1	0	0	0	0	0	0	0	17008	232	8	5		5	UBE4A	11	118243415	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	33249	118243415	16763101	1512	153922											
MLL	4297	broad.mit.edu	37	chr11	118363824	118363824	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggagagtataccttcccGcagctcccccgaaggacctg	11	14	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118363824	C	C	118363824	3	2	191	1	0	0	0	0	1	0	0	0	9713	1087	38	4	5110	4	MLL	11	118363824	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	120409	118363824	16642692	1513	153923											
BCL9L	283149	broad.mit.edu	37	chr11	118771514	118771514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggacactgagggaggagcCgaggacctggggcgacttga	18	9	0	2	rs150094487		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118771514	A	A	118771514	3	1	191	1	0	0	0	0	1	0	0	0	1387	652	23	1	1573	1	BCL9L	11	118771514	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	407690	118771514	16235002	1514	153924											
FOXR1	283150	broad.mit.edu	37	chr11	118849966	118849966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagtaggcgaggggcatGgggaagagccattacagttc	18	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118849966	T	T	118849966	1	4	191	0	1	0	0	0	0	0	0	0	6091	1363	47	2		2	FOXR1	11	118849966	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	78452	118849966	16156550	1515	153925											
ABCG4	64137	broad.mit.edu	37	chr11	119024758	119024758	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tataagacccttctcaagtgCctctcaggtaaattctgccg	7	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119024758	T	T	119024758	2	4	191	1	0	0	0	0	0	0	0	1	70	747	26	4		4	ABCG4	11	119024758	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	174792	119024758	15981758	1516	153926											
NLRX1	79671	broad.mit.edu	37	chr11	119045184	119045184	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcattctggtgaccactcGgccctctgccattggccgta	10	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119045184	T	T	119045184	3	4	191	1	0	0	0	0	1	0	0	0	10580	1116	39	1	890	1	NLRX1	11	119045184	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	20426	119045184	15961332	1517	153927											
GRIK4	2900	broad.mit.edu	37	chr11	120732757	120732757	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaccaatcccatgctttcttCcaagagtttgcccagagcct	6	14	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120732757	T	T	120732757	2	4	191	1	0	0	0	0	0	0	0	1	6842	854	30	4		4	GRIK4	11	120732757	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1687573	120732757	14273759	1518	153928											
TMEM225	338661	broad.mit.edu	37	chr11	123754007	123754007	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtcagatttatggatgttCaggcaggtacagctactggt	12	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123754007	T	T	123754007	2	4	191	1	0	0	0	0	0	0	0	1	16270	813	29	4		4	TMEM225	11	123754007	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	3021250	123754007	11252509	1519	153929											
OR6T1	219874	broad.mit.edu	37	chr11	123814154	123814154	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatcagggtctcatagCggagtggtcggcagattgcc	13	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123814154	A	A	123814154	3	1	191	1	0	0	0	0	1	0	0	0	11304	768	27	3	582	3	OR6T1	11	123814154	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	60147	123814154	11192362	1520	153930											
ROBO3	64221	broad.mit.edu	37	chr11	124748584	124748584	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatcccgaagggaaacccCctctcccacaccttcctatg	5	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124748584	T	T	124748584	3	4	191	1	0	0	0	0	1	0	0	0	13626	623	22	4	3515	4	ROBO3	11	124748584	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	934430	124748584	10257932	1521	153931											
HEPACAM	220296	broad.mit.edu	37	chr11	124792116	124792116	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttcatcctgaaaccaccCgcatcaccatccatggaaaa	5	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124792116	T	T	124792116	1	4	191	0	1	0	0	0	0	0	0	0	7119	667	23	4		4	HEPACAM	11	124792116	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	43532	124792116	10214400	1522	153932											
PKNOX2	63876	broad.mit.edu	37	chr11	125255342	125255342	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcaaggagtgggaccttgGgagaagtgaggggaacgtgg	19	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125255342	C	C	125255342	1	2	191	0	1	0	0	0	0	0	0	0	12078	1247	43	4		4	PKNOX2	11	125255342	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	463226	125255342	9751174	1523	153933											
KCNJ1	3758	broad.mit.edu	37	chr11	128708970	128708970	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcttcataatgcttctaGgtactaggagctttagagac	9	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128708970	T	T	128708970	1	4	191	0	1	0	0	0	0	0	0	0	8113	1015	35	2		2	KCNJ1	11	128708970	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	3453628	128708970	6297546	1524	153934											
ADAMTS15	170689	broad.mit.edu	37	chr11	130343102	130343102	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttcgtggtgtcggcggtgGagcgggacctggtggtgaag	20	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130343102	T	T	130343102	4	4	191	1	0	0	0	0	0	1	0	0	260	1175	41	3	2269	3	ADAMTS15	11	130343102	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1634132	130343102	4663414	1525	153935											
NTM	50863	broad.mit.edu	37	chr11	132177605	132177605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggctttgtgagtgaagaCgaatacttggaaattcaggg	14	4	1	3	rs138880898		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132177605	A	A	132177605	3	1	191	1	0	0	0	0	1	0	0	0	10794	535	19	3	649	3	NTM	11	132177605	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1834503	132177605	2828911	1526	153936											
NTM	50863	broad.mit.edu	37	chr11	132204851	132204851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggatgactcaccaggggCaaggccaaatgacagcagac	14	10	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132204851	A	A	132204851	1	1	191	0	1	0	0	0	0	0	0	0	10794	725	25	3		3	NTM	11	132204851	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	27246	132204851	2801665	1527	153937											
NTM	50863	broad.mit.edu	37	chr11	132204969	132204969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcagcgaggtgagcaacGgcacgtcgaggagggcaggc	18	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132204969	T	T	132204969	3	4	191	1	0	0	0	0	1	0	0	0	10794	1116	39	1	1130	1	NTM	11	132204969	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	118	132204969	2801547	1528	153938											
OPCML	4978	broad.mit.edu	37	chr11	132812797	132812797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagcccaggggctcggcCcccgcggaaggacagctccc	13	19	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132812797	A	A	132812797	1	1	191	0	1	0	0	0	0	0	0	0	10968	638	22	2		2	OPCML	11	132812797	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	607828	132812797	2193719	1529	153939											
RAD51AP1	10635	broad.mit.edu	37	chr12	4665604	4665604	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctgtcttcagataccacTaggaaaccattagaaatacg	6	10	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4665604	C	C	4665604	2	2	191	1	0	0	0	0	0	0	0	1	13094	1509	53	5		5	RAD51AP1	12	4665604	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08		4665604	129186291	1530	153940											
DYRK4	8798	broad.mit.edu	37	chr12	4711846	4711846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagggtcattttctgtaCtatttgcattattaatggga	10	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4711846	A	A	4711846	1	1	191	0	1	0	0	0	0	0	0	0	4898	580	20	3		3	DYRK4	12	4711846	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	46242	4711846	129140049	1531	153941											
VWF	7450	broad.mit.edu	37	chr12	6140834	6140834	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcttcatcacaggcctttGagtacgtgtcacaggatctt	8	11	5	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6140834	A	A	6140834	1	1	191	0	1	0	0	0	0	0	0	0	17373	1305	45	4		4	VWF	12	6140834	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1428988	6140834	127711061	1532	153942											
TNFRSF1A	7132	broad.mit.edu	37	chr12	6442365	6442365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcgcctgcacccccaccCcacaggacagaggaagtgac	11	16	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6442365	A	A	6442365	1	1	191	0	1	0	0	0	0	0	0	0	16416	638	22	2		2	TNFRSF1A	12	6442365	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	301531	6442365	127409530	1533	153943											
PEX5	5830	broad.mit.edu	37	chr12	7362816	7362816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgtttggcctgccccaGtgacagtgggacgggctgcc	14	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7362816	T	T	7362816	3	4	191	1	0	0	0	0	1	0	0	0	11843	1020	36	3	2020	3	PEX5	12	7362816	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	920451	7362816	126489079	1534	153944											
C3AR1	719	broad.mit.edu	37	chr12	8211786	8211786	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatcgttattgccacgagGggtgttggcacttgatcgtc	14	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8211786	T	T	8211786	2	4	191	1	0	0	0	0	0	0	0	1	2227	1219	43	2		2	C3AR1	12	8211786	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	848970	8211786	125640109	1535	153945											
A2ML1	144568	broad.mit.edu	37	chr12	9027629	9027629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtccagcggagaaatgGgtggagttatgggttagggt	18	3	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9027629	T	T	9027629	1	4	191	0	1	0	0	0	0	0	0	0	5	1247	43	2		2	A2ML1	12	9027629	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	815843	9027629	124824266	1536	153946											
A2M	2	broad.mit.edu	37	chr12	9225254	9225254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaagagtctcacctggaGgtagacacatccttctcctg	9	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9225254	T	T	9225254	3	4	191	1	0	0	0	0	1	0	0	0	4	1000	35	2	482	2	A2M	12	9225254	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	197625	9225254	124626641	1537	153947											
CLEC12A	160364	broad.mit.edu	37	chr12	10133289	10133289	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtaaaatggcctgtgctgCtcagaatgccagcctgttga	12	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10133289	T	T	10133289	3	4	191	1	0	0	0	0	1	0	0	0	3529	797	28	4	502	4	CLEC12A	12	10133289	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	908035	10133289	123718606	1538	153948											
CSDA	8531	broad.mit.edu	37	chr12	10871718	10871718	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttctgacgttgaaccatTtgacagtgccaaggactttg	9	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10871718	C	C	10871718	3	2	191	1	0	0	0	0	1	0	0	0	3961	1841	64	5	863	5	CSDA	12	10871718	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	738429	10871718	122980177	1539	153949											
PRB1	5542	broad.mit.edu	37	chr12	11506880	11506880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttgtggctttcctggagGaggtggggggccctggggct	19	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11506880	T	T	11506880	3	4	191	1	0	0	0	0	1	0	0	0	12548	1174	41	3	842	3	PRB1	12	11506880	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	635162	11506880	122345015	1540	153950											
GUCY2C	2984	broad.mit.edu	37	chr12	14772323	14772323	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaggtaagcctctctgtaTggtcacaatcctgaatactt	8	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14772323	C	C	14772323	1	2	191	0	1	0	0	0	0	0	0	0	6961	1479	51	5		5	GUCY2C	12	14772323	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	3265443	14772323	119079572	1541	153951											
PTPRO	5800	broad.mit.edu	37	chr12	15733636	15733636	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacttatctttcagggataCaactcaccccaggagtatat	6	11	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15733636	T	T	15733636	2	4	191	1	0	0	0	0	0	0	0	1	12917	489	17	4		4	PTPRO	12	15733636	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	961313	15733636	118118259	1542	153952											
PLCZ1	89869	broad.mit.edu	37	chr12	18848045	18848045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtattttgacattgtcagGtaatagagaatacaaataaa	7	3	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18848045	T	T	18848045	1	4	191	0	1	0	0	0	0	0	0	0	12139	1276	44	3		3	PLCZ1	12	18848045	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3114409	18848045	115003850	1543	153953											
PLEKHA5	54477	broad.mit.edu	37	chr12	19506725	19506725	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttaaataaatttgctttctGattttaaaaagtgtcagaaa	5	3	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19506725	A	A	19506725	1	1	191	0	1	0	0	0	0	0	0	0	12154	1305	45	4		4	PLEKHA5	12	19506725	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	658680	19506725	114345170	1544	153954											
PDE3A	5139	broad.mit.edu	37	chr12	20806975	20806975	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggaatccttcatctctcAcattgtggggcctctgtgca	9	12	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20806975	G	G	20806975	3	3	191	1	0	0	0	0	1	0	0	0	11731	159	6	5	3078	5	PDE3A	12	20806975	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1300250	20806975	113044920	1545	153955											
SLCO1B3	28234	broad.mit.edu	37	chr12	21175772	21175772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaaaataaaacactctcTtgtctcgataggttgtgtga	8	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21175772	C	C	21175772	1	2	191	0	1	0	0	0	0	0	0	0	14838	1624	56	5		5	SLCO1B3	12	21175772	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	368797	21175772	112676123	1546	153956											
SLCO1B1	10599	broad.mit.edu	37	chr12	21349863	21349863	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatttttgactggcttctAtaattatttattctaggcac	6	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21349863	G	G	21349863	1	3	191	0	1	0	0	0	0	0	0	0	14837	464	16	5		5	SLCO1B1	12	21349863	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	174091	21349863	112502032	1547	153957											
SLCO1B1	10599	broad.mit.edu	37	chr12	21355639	21355639	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtttgtatatatcactatAtcaattgcataatatgttaa	6	4	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21355639	G	G	21355639	1	3	191	0	1	0	0	0	0	0	0	0	14837	464	16	5		5	SLCO1B1	12	21355639	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	5776	21355639	112496256	1548	153958											
SLCO1B1	10599	broad.mit.edu	37	chr12	21391852	21391852	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctggatactggagaaaatGttttaagttattacacacaa	7	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21391852	A	A	21391852	1	1	191	0	1	0	0	0	0	0	0	0	14837	1392	48	4		4	SLCO1B1	12	21391852	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	36213	21391852	112460043	1549	153959											
ABCC9	10060	broad.mit.edu	37	chr12	22040803	22040803	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcaaaaggaagcgaacttTcaccagttcgccaactgtcg	8	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22040803	G	G	22040803	3	3	191	1	0	0	0	0	1	0	0	0	59	1783	62	5	3027	5	ABCC9	12	22040803	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	648951	22040803	111811092	1550	153960											
CMAS	55907	broad.mit.edu	37	chr12	22208375	22208375	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaatatccttttcatttctCttgtctttttaagaggttga	5	6	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22208375	G	G	22208375	1	3	191	0	1	0	0	0	0	0	0	0	3607	928	32	4		4	CMAS	12	22208375	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	167572	22208375	111643520	1551	153961											
ETNK1	55500	broad.mit.edu	37	chr12	22811970	22811970	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatagctcgtcagcttgctAaaatccatgctattcatgca	6	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22811970	C	C	22811970	3	2	191	1	0	0	0	0	1	0	0	0	5315	363	13	5	814	5	ETNK1	12	22811970	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	603595	22811970	111039925	1552	153962											
LRMP	4033	broad.mit.edu	37	chr12	25232384	25232384	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcatcgacagacggtactAtaacttcaagtggtaagtgg	10	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25232384	G	G	25232384	3	3	191	1	0	0	0	0	1	0	0	0	9037	449	16	5	134	5	LRMP	12	25232384	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2420414	25232384	108619511	1553	153963											
ITPR2	3709	broad.mit.edu	37	chr12	26568288	26568288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttccatagtgaagtcatcCttcaaaaaaaggaacccaat	5	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26568288	A	A	26568288	3	1	191	1	0	0	0	0	1	0	0	0	7991	680	24	2	879	2	ITPR2	12	26568288	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1335904	26568288	107283607	1554	153964											
OVCH1	341350	broad.mit.edu	37	chr12	29614986	29614986	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctcgatgatgaagtaagcaGaaagtgttgttagaaatgta	12	3	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29614986	C	C	29614986	1	2	191	0	1	0	0	0	0	0	0	0	11417	957	33	4		4	OVCH1	12	29614986	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3046698	29614986	104236909	1555	153965											
OVCH1	341350	broad.mit.edu	37	chr12	29648074	29648074	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagtattttctcaataggtTatagaccgaacaaaattatt	5	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29648074	A	A	29648074	1	1	191	0	1	0	0	0	0	0	0	0	11417	1769	61	5		5	OVCH1	12	29648074	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	33088	29648074	104203821	1556	153966											
TMTC1	83857	broad.mit.edu	37	chr12	29673641	29673641	+	Frame_Shift_Del	DEL	C	-	-													ttggtatatttcttcagcttCtttaaaccgctcctttaaaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29673641	-	-	29673641	7	5	191	1	0	1	0	1	0	0	0	0	16383	922	32	0	878	0	TMTC1	12	29673641	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	25567	29673641	104178254	1557	153967											
TMTC1	83857	broad.mit.edu	37	chr12	29757039	29757039	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggtctacacacagaagacTgtctctctggaactatcaat	7	10	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29757039	A	A	29757039	1	1	191	0	1	0	0	0	0	0	0	0	16383	1595	55	5		5	TMTC1	12	29757039	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	83398	29757039	104094856	1558	153968											
TMTC1	83857	broad.mit.edu	37	chr12	29908738	29908738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccagcatcgcacaggtcCccagaaacaaactgagcagc	8	15	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29908738	A	A	29908738	3	1	191	1	0	0	0	0	1	0	0	0	16383	623	22	2	2073	2	TMTC1	12	29908738	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	151699	29908738	103943157	1559	153969											
IPO8	10526	broad.mit.edu	37	chr12	30805117	30805117	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actgaaacaatagattaggtCatgcttaccttcctacacat	5	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30805117	G	G	30805117	1	3	191	0	1	0	0	0	0	0	0	0	7868	841	29	4		4	IPO8	12	30805117	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	896379	30805117	103046778	1560	153970											
IPO8	10526	broad.mit.edu	37	chr12	30827806	30827806	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatgtgaagttagattgcTatacaaatgaaaattcttta	6	3	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30827806	A	A	30827806	1	1	191	0	1	0	0	0	0	0	0	0	7868	1537	53	5		5	IPO8	12	30827806	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	22689	30827806	103024089	1561	153971											
CAPRIN2	65981	broad.mit.edu	37	chr12	30883196	30883196	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggttgtatctctggctGggcaaattccattagagact	11	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30883196	A	A	30883196	4	1	191	1	0	0	0	0	0	1	0	0	2662	1357	47	4	2350	4	CAPRIN2	12	30883196	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	55390	30883196	102968699	1562	153972											
PKP2	5318	broad.mit.edu	37	chr12	32977015	32977015	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taatctgcaatggttcctctGacataatggaccagtgagtc	9	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32977015	A	A	32977015	2	1	191	1	0	0	0	0	0	0	0	1	12080	1277	45	4		4	PKP2	12	32977015	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2093819	32977015	100874880	1563	153973											
PKP2	5318	broad.mit.edu	37	chr12	33031388	33031389	+	Missense_Mutation	DNP	CC	AA	AA													tccagtctcctcagaggatgCctcaaggacctttcttccac							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	33031389	AA	AA	33031388	3	1	191	1	0	0	0	0	1	0	0	0	12080	738	26	3	2267	3	PKP2	12	33031388	Missense_Mutation	DNP	CC	TCGA-64-5781-01A-01D-1625-08	54373	33031388	100820507	1564	153974											
SYT10	341359	broad.mit.edu	37	chr12	33532745	33532745	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacaacaaaaagagcagaCgtaaggaactcacaagctta	9	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33532745	T	T	33532745	1	4	191	0	1	0	0	0	0	0	0	0	15585	551	19	4		4	SYT10	12	33532745	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	501357	33532745	100319150	1565	153975											
KIF21A	55605	broad.mit.edu	37	chr12	39705243	39705243	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatccagtgaagaggagatCatcagtagaatccacacaga	10	8	2	6			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39705243	T	T	39705243	3	4	191	1	0	0	0	0	1	0	0	0	8358	826	29	4	980	4	KIF21A	12	39705243	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6172498	39705243	94146652	1566	153976											
LRRK2	120892	broad.mit.edu	37	chr12	40689247	40689247	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggtcatcaaaacttcaatCccatatgaggcattcagaca	7	10	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40689247	T	T	40689247	3	4	191	1	0	0	0	0	1	0	0	0	9120	855	30	4	2987	4	LRRK2	12	40689247	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	984004	40689247	93162648	1567	153977											
CNTN1	1272	broad.mit.edu	37	chr12	41123265	41123265	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatgattaagacatatttTattggcagtgtggatgagga	12	3	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41123265	C	C	41123265	1	2	191	0	1	0	0	0	0	0	0	0	3672	1769	61	5		5	CNTN1	12	41123265	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	434018	41123265	92728630	1568	153978											
CNTN1	1272	broad.mit.edu	37	chr12	41323782	41323782	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcgtgttcagcaaattcatCccactcattccaatacctga	5	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41323782	A	A	41323782	2	1	191	1	0	0	0	0	0	0	0	1	3672	845	30	3		3	CNTN1	12	41323782	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	200517	41323782	92528113	1569	153979											
ADAMTS20	80070	broad.mit.edu	37	chr12	43826486	43826486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaggtttaagctggtcaCcacagtagtggtcatcaact	11	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43826486	A	A	43826486	3	1	191	1	0	0	0	0	1	0	0	0	266	507	18	3	2962	3	ADAMTS20	12	43826486	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2502704	43826486	90025409	1570	153980											
IRAK4	51135	broad.mit.edu	37	chr12	44167770	44167770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattttattttttcagatGgttgacattactactgaaga	6	4	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44167770	T	T	44167770	3	4	191	1	0	0	0	0	1	0	0	0	7895	1348	47	2	672	2	IRAK4	12	44167770	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	341284	44167770	89684125	1571	153981											
SLC38A4	55089	broad.mit.edu	37	chr12	47186734	47186734	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagtaatttttaaccccatAcctgctcattgctgcctttt	4	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47186734	T	T	47186734	5	4	191	1	0	0	0	0	0	0	1	0	14720	405	14	5	1582	5	SLC38A4	12	47186734	Splice_Site	SNP	A	TCGA-64-5781-01A-01D-1625-08	3018964	47186734	86665161	1572	153982											
ADCY6	112	broad.mit.edu	37	chr12	49170083	49170083	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccacggcctggctccaccTcgtagtccccgttcaggtac	9	18	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49170083	A	A	49170083	3	1	191	1	0	0	0	0	1	0	0	0	298	1551	54	5	1980	5	ADCY6	12	49170083	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1983349	49170083	84681812	1573	153983											
WNT10B	7480	broad.mit.edu	37	chr12	49360250	49360250	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccccactgcccggaactcTggggccgccctccagcatgt	11	19	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49360250	A	A	49360250	2	1	191	1	0	0	0	0	0	0	0	1	17510	1567	55	5		5	WNT10B	12	49360250	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	190167	49360250	84491645	1574	153984											
KCNH3	23416	broad.mit.edu	37	chr12	49944164	49944164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgtgtgtgagaccatgGccctgatctgtggaaaacct	12	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49944164	T	T	49944164	1	4	191	0	1	0	0	0	0	0	0	0	8103	1218	42	3		3	KCNH3	12	49944164	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	583914	49944164	83907731	1575	153985											
MCRS1	10445	broad.mit.edu	37	chr12	49959862	49959862	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccgaacccttactacctGgaggagcttctccgtttagg	9	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49959862	T	T	49959862	2	4	191	1	0	0	0	0	0	0	0	1	9492	1335	47	2		2	MCRS1	12	49959862	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	15698	49959862	83892033	1576	153986											
AQP6	363	broad.mit.edu	37	chr12	50369313	50369313	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atctacaacttcgtcctgttCcccgacaccaagaccctggc	6	17	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50369313	G	G	50369313	3	3	191	1	0	0	0	0	1	0	0	0	832	854	30	4	722	4	AQP6	12	50369313	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	409451	50369313	83482582	1577	153987											
FIGNL2	401720	broad.mit.edu	37	chr12	52215878	52215878	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgtggagtgaggccaagGggtagggtggctccggccct	18	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52215878	T	T	52215878	3	4	191	1	0	0	0	0	1	0	0	0	5950	1232	43	2	1645	2	FIGNL2	12	52215878	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1846565	52215878	81636017	1578	153988											
KRT6B	3854	broad.mit.edu	37	chr12	52845258	52845258	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctagggtctctccggcagGaaggtgttgctcttctggtc	13	11	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52845258	C	C	52845258	1	2	191	0	1	0	0	0	0	0	0	0	8552	1189	41	4		4	KRT6B	12	52845258	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	629380	52845258	81006637	1579	153989											
KRT6B	3854	broad.mit.edu	37	chr12	52845437	52845437	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaggggagtcaggagactCtggttgacagtgacctcttg	15	7	3	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52845437	A	A	52845437	3	1	191	1	0	0	0	0	1	0	0	0	8552	912	32	3	1304	3	KRT6B	12	52845437	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	179	52845437	81006458	1580	153990											
KRT6A	3853	broad.mit.edu	37	chr12	52884523	52884523	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catctgggacagctcctgcaGaacagaaggtcataagatca	10	10	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52884523	C	C	52884523	1	2	191	0	1	0	0	0	0	0	0	0	8551	957	33	4		4	KRT6A	12	52884523	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	39086	52884523	80967372	1581	153991											
KRT5	3852	broad.mit.edu	37	chr12	52912811	52912811	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcccccacgatgctgtccAgctgcctcctgaggttgttg	11	14	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52912811	T	T	52912811	3	4	191	1	0	0	0	0	1	0	0	0	8550	188	7	5	1115	5	KRT5	12	52912811	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	28288	52912811	80939084	1582	153992											
KRT74	121391	broad.mit.edu	37	chr12	52966145	52966145	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctgaccctggtgcatactCccccatctcctaaaaaataa	4	15	1	1	rs34211466		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52966145	G	G	52966145	1	3	191	0	1	0	0	0	0	0	0	0	8558	870	30	4		4	KRT74	12	52966145	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	53334	52966145	80885750	1583	153993											
KRT72	140807	broad.mit.edu	37	chr12	52994868	52994868	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatctgctcccgctcctgGgcgcgcaccctctggatctc	10	17	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52994868	T	T	52994868	2	4	191	1	0	0	0	0	0	0	0	1	8556	1219	43	2		2	KRT72	12	52994868	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	28723	52994868	80857027	1584	153994											
KRT79	338785	broad.mit.edu	37	chr12	53215770	53215770	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttgtgctgaatccaccCttggtggcccccccactccc	7	18	0	1	rs141269667		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53215770	A	A	53215770	3	1	191	1	0	0	0	0	1	0	0	0	8563	680	24	2	117	2	KRT79	12	53215770	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	220902	53215770	80636125	1585	153995											
ATP5G2	517	broad.mit.edu	37	chr12	54063612	54063612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggtaaccctccccacCcatcacccccaaaaccacag	5	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54063612	T	T	54063612	1	4	191	0	1	0	0	0	0	0	0	0	1158	638	22	4		4	ATP5G2	12	54063612	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	847842	54063612	79788283	1586	153996											
CALCOCO1	57658	broad.mit.edu	37	chr12	54115109	54115109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcagaaaagggtatccCcagtaactagcttgagtgag	12	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54115109	A	A	54115109	1	1	191	0	1	0	0	0	0	0	0	0	2603	638	22	2		2	CALCOCO1	12	54115109	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	51497	54115109	79736786	1587	153997											
NCKAP1L	3071	broad.mit.edu	37	chr12	54893129	54893129	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggttgaaatatatatggtttCtctctgcagacttgttcaga	9	6	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54893129	A	A	54893129	1	1	191	0	1	0	0	0	0	0	0	0	10317	928	32	3		3	NCKAP1L	12	54893129	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	778020	54893129	78958766	1588	153998											
NCKAP1L	3071	broad.mit.edu	37	chr12	54914393	54914393	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagggactagctcttaaactCtatttttcttttcctttatt	4	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54914393	T	T	54914393	1	4	191	0	1	0	0	0	0	0	0	0	10317	928	32	4		4	NCKAP1L	12	54914393	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	21264	54914393	78937502	1589	153999											
LACRT	90070	broad.mit.edu	37	chr12	55026832	55026833	+	Intron	INS	-	C	C													cttctttattatattacctgINScccctccccattaccaccaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55026833	C	C	55026832	6	5	191	0	1	1	1	0	0	0	0	0	8668	1334	46	0		0	LACRT	12	55026832	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	112439	55026832	78825063	1590	154000											
NEUROD4	58158	broad.mit.edu	37	chr12	55421015	55421015	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatcagtgggaacttctcCttgaagcaagatgggtctcc	11	10	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55421015	G	G	55421015	2	3	191	1	0	0	0	0	0	0	0	1	10445	668	24	4		4	NEUROD4	12	55421015	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	394183	55421015	78430880	1591	154001											
NEUROD4	58158	broad.mit.edu	37	chr12	55421034	55421034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttgaagcaagatgggtctCctgacctagaaaaatcctac	8	11	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55421034	A	A	55421034	3	1	191	1	0	0	0	0	1	0	0	0	10445	855	30	3	813	3	NEUROD4	12	55421034	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	19	55421034	78430861	1592	154002											
PA2G4	5036	broad.mit.edu	37	chr12	56504553	56504553	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacactttttcctctcccttCctgcctagacttgtagcgtg	6	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56504553	T	T	56504553	1	4	191	0	1	0	0	0	0	0	0	0	11455	870	30	4		4	PA2G4	12	56504553	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1083519	56504553	77347342	1593	154003											
PAN2	9924	broad.mit.edu	37	chr12	56713716	56713716	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggcatctcattcagcaTcagtggaataaaggtagtat	10	7	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56713716	A	A	56713716	3	1	191	1	0	0	0	0	1	0	0	0	11508	1435	50	5	742	5	PAN2	12	56713716	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	209163	56713716	77138179	1594	154004											
LRP1	4035	broad.mit.edu	37	chr12	57569182	57569182	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttggggcccagcagggccGtggtcttgcctcctctcagc	13	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57569182	T	T	57569182	1	4	191	0	1	0	0	0	0	0	0	0	9038	1160	40	3		3	LRP1	12	57569182	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	855466	57569182	76282713	1595	154005											
LRP1	4035	broad.mit.edu	37	chr12	57569858	57569858	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accgacgtggtggaggacaaGatctaccgcgggaagctgct	15	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57569858	T	T	57569858	3	4	191	1	0	0	0	0	1	0	0	0	9038	933	33	3	4054	3	LRP1	12	57569858	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	676	57569858	76282037	1596	154006											
R3HDM2	22864	broad.mit.edu	37	chr12	57663634	57663634	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagtggggaggggctgaccCgtggaagccatgatgaagct	18	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57663634	G	G	57663634	2	3	191	1	0	0	0	0	0	0	0	1	12996	639	23	4		4	R3HDM2	12	57663634	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	93776	57663634	76188261	1597	154007											
XRCC6BP1	91419	broad.mit.edu	37	chr12	58347494	58347494	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaactaatatgaaatcaCttcccctccagagtgttacg	5	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58347494	T	T	58347494	1	4	191	0	1	0	0	0	0	0	0	0	17585	580	20	4		4	XRCC6BP1	12	58347494	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	683860	58347494	75504401	1598	154008											
AVPR1A	552	broad.mit.edu	37	chr12	63543872	63543873	+	Missense_Mutation	DNP	CG	AA	AA													ctggcgcgacgccgtcttccCgcggacgttgcaccagatgt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	63543873	AA	AA	63543872	3	1	191	1	0	0	0	0	1	0	0	0	1236	652	23	1	519	1	AVPR1A	12	63543872	Missense_Mutation	DNP	CG	TCGA-64-5781-01A-01D-1625-08	5196378	63543872	70308023	1599	154009											
DPY19L2	283417	broad.mit.edu	37	chr12	63976267	63976267	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcataattaaaatggcaagGgcagtaaacactaacaactg	7	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63976267	T	T	63976267	2	4	191	1	0	0	0	0	0	0	0	1	4781	1219	43	2		2	DPY19L2	12	63976267	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	432395	63976267	69875628	1600	154010											
DPY19L2	283417	broad.mit.edu	37	chr12	63991538	63991538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttcagattttaaaaaacCtagagcaaaaaactcatatt	4	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63991538	A	A	63991538	1	1	191	0	1	0	0	0	0	0	0	0	4781	696	24	2		2	DPY19L2	12	63991538	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	15271	63991538	69860357	1601	154011											
DPY19L2	283417	broad.mit.edu	37	chr12	64040973	64040973	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaagtgaatcataatattAttaaatgtttatgaatgttt	5	1	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64040973	T	T	64040973	1	4	191	0	1	0	0	0	0	0	0	0	4781	464	16	5		5	DPY19L2	12	64040973	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	49435	64040973	69810922	1602	154012											
C12orf56	115749	broad.mit.edu	37	chr12	64668647	64668647	+	Intron	DEL	G	-	-													gtatctgtttaattaggcttGggggtgatttcgttttgact							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64668647	-	-	64668647	6	5	191	0	1	1	0	1	0	0	0	0	1713	1363	47	0		0	C12orf56	12	64668647	Intron	DEL	G	TCGA-64-5781-01A-01D-1625-08	627674	64668647	69183248	1603	154013											
RAP1B	5908	broad.mit.edu	37	chr12	69036588	69036588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatccaccaaaccggccttGgccacgttggccttgtagta	9	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69036588	T	T	69036588	1	4	191	0	1	0	0	0	0	0	0	0	13144	1363	47	2		2	RAP1B	12	69036588	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4367941	69036588	64815307	1604	154014											
BEST3	144453	broad.mit.edu	37	chr12	70072552	70072552	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagatcaacactgtctctGattctaccttcattccgggc	7	13	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70072552	A	A	70072552	2	1	191	1	0	0	0	0	0	0	0	1	1411	1280	45	4		4	BEST3	12	70072552	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1035964	70072552	63779343	1605	154015											
PTPRB	5787	broad.mit.edu	37	chr12	70948995	70948995	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagctccattggtgtcgctGaaccagctgcagttgacagt	11	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70948995	C	C	70948995	3	2	191	1	0	0	0	0	1	0	0	0	12904	1281	45	4	1619	4	PTPRB	12	70948995	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	876443	70948995	62902900	1606	154016											
ZFC3H1	196441	broad.mit.edu	37	chr12	72004554	72004554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacctgtaagatagatataCacacaattccatcagaaaat	6	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72004554	A	A	72004554	1	1	191	0	1	0	0	0	0	0	0	0	17759	493	17	3		3	ZFC3H1	12	72004554	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1055559	72004554	61847341	1607	154017											
RAB21	23011	broad.mit.edu	37	chr12	72179334	72179334	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgatagaaacagcacaagtgGatgagagagcaaaaggcaat	12	5	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72179334	C	C	72179334	3	2	191	1	0	0	0	0	1	0	0	0	13016	1174	41	4	585	4	RAB21	12	72179334	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	174780	72179334	61672561	1608	154018											
TRHDE	29953	broad.mit.edu	37	chr12	73012611	73012611	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttttccgtcttttatttGcgtaagtaaaaatcttcgtt	6	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73012611	A	A	73012611	1	1	191	0	1	0	0	0	0	0	0	0	16603	1334	46	4		4	TRHDE	12	73012611	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	833277	73012611	60839284	1609	154019											
TRHDE	29953	broad.mit.edu	37	chr12	73056937	73056937	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaaaatgctttaccaagacGagcttttccaatggttagga	10	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73056937	C	C	73056937	3	2	191	1	0	0	0	0	1	0	0	0	16603	1059	37	4	3111	4	TRHDE	12	73056937	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	44326	73056937	60794958	1610	154020											
KCNC2	3747	broad.mit.edu	37	chr12	75444272	75444272	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttgcaaaaagtaggtgAgcttgcctgaggagcaggag	15	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75444272	T	T	75444272	3	4	191	1	0	0	0	0	1	0	0	0	8085	304	11	5	481	5	KCNC2	12	75444272	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2387335	75444272	58407623	1611	154021											
CAPS2	84698	broad.mit.edu	37	chr12	75706545	75706545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagccaccctttaattgaCcaaggatatgaatgtcatgc	8	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75706545	A	A	75706545	1	1	191	0	1	0	0	0	0	0	0	0	2664	522	18	3		3	CAPS2	12	75706545	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	262273	75706545	58145350	1612	154022											
GLIPR1L2	144321	broad.mit.edu	37	chr12	75816874	75816874	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgttaatattattcctttGatcagaatgctactattatg	5	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75816874	T	T	75816874	1	4	191	0	1	0	0	0	0	0	0	0	6507	1305	45	3		3	GLIPR1L2	12	75816874	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	110329	75816874	58035021	1613	154023											
NAV3	89795	broad.mit.edu	37	chr12	78334047	78334047	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtcttcagcattttattGtctctgttttccctcacccc	4	13	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78334047	A	A	78334047	1	1	191	0	1	0	0	0	0	0	0	0	10279	1392	48	4		4	NAV3	12	78334047	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2517173	78334047	55517848	1614	154024											
NAV3	89795	broad.mit.edu	37	chr12	78515894	78515894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggctaagcggcagcagCagccctctcttcaataaacc	11	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78515894	A	A	78515894	3	1	191	1	0	0	0	0	1	0	0	0	10279	709	25	3	3986	3	NAV3	12	78515894	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	181847	78515894	55336001	1615	154025											
NAV3	89795	broad.mit.edu	37	chr12	78574729	78574729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctaagcctactcggccaCcgtcagaatcctcaagcagc	8	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78574729	A	A	78574729	3	1	191	1	0	0	0	0	1	0	0	0	10279	507	18	3	5644	3	NAV3	12	78574729	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	58835	78574729	55277166	1616	154026											
NAV3	89795	broad.mit.edu	37	chr12	78593237	78593237	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgacctagtcaaaattaTagattggattccgaagacgt	8	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78593237	C	C	78593237	3	2	191	1	0	0	0	0	1	0	0	0	10279	1406	49	5	6717	5	NAV3	12	78593237	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	18508	78593237	55258658	1617	154027											
ACSS3	79611	broad.mit.edu	37	chr12	81532992	81532992	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttgtagaagaagcgctaaAaataggacaacacaaaccag	8	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81532992	T	T	81532992	3	4	191	1	0	0	0	0	1	0	0	0	190	14	1	5	742	5	ACSS3	12	81532992	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2939755	81532992	52318903	1618	154028											
PPFIA2	8499	broad.mit.edu	37	chr12	81741468	81741468	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacccttgccaaattcagGccttcgaggctcacactagc	9	14	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81741468	T	T	81741468	2	4	191	1	0	0	0	0	0	0	0	1	12406	1190	42	3		3	PPFIA2	12	81741468	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	208476	81741468	52110427	1619	154029											
SLC6A15	55117	broad.mit.edu	37	chr12	85264245	85264246	+	Intron	INS	-	A	A													ttcaatgaaaagtcaaatacINSaaaaaactcaccagtaagaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85264246	A	A	85264245	6	5	191	0	1	1	1	0	0	0	0	0	14792	493	17	0		0	SLC6A15	12	85264245	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	3522777	85264245	48587650	1620	154030											
LRRIQ1	84125	broad.mit.edu	37	chr12	85438631	85438631	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatattcactattacaattAgaaattttctctcttacaca	1	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85438631	T	T	85438631	1	4	191	0	1	0	0	0	0	0	0	0	9116	435	15	5		5	LRRIQ1	12	85438631	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	174386	85438631	48413264	1621	154031											
LRRIQ1	84125	broad.mit.edu	37	chr12	85518200	85518200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagagagaagacagcaagGcaagcagtattcccaccata	10	9	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85518200	T	T	85518200	3	4	191	1	0	0	0	0	1	0	0	0	9116	1203	42	3	3972	3	LRRIQ1	12	85518200	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	79569	85518200	48333695	1622	154032											
LRRIQ1	84125	broad.mit.edu	37	chr12	85546088	85546088	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaagaatggctagcattaGattccacccgcttcccttca	7	12	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85546088	T	T	85546088	3	4	191	1	0	0	0	0	1	0	0	0	9116	942	33	3	4438	3	LRRIQ1	12	85546088	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	27888	85546088	48305807	1623	154033											
CEP290	80184	broad.mit.edu	37	chr12	88465670	88465670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggcttgccactttttacCttcttcccacctaattaatt	3	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88465670	A	A	88465670	3	1	191	1	0	0	0	0	1	0	0	0	3283	681	24	2	1748	2	CEP290	12	88465670	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2919582	88465670	45386225	1624	154034											
EEA1	8411	broad.mit.edu	37	chr12	93278249	93278249	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggcagtggggatggctaTaatggatttggtaatgatgg	18	2	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93278249	C	C	93278249	1	2	191	0	1	0	0	0	0	0	0	0	4961	1421	49	5		5	EEA1	12	93278249	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	4812579	93278249	40573646	1625	154035											
TMPO	7112	broad.mit.edu	37	chr12	98940250	98940250	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagatacatttaaacaagtActagtgtattctagtaggga	8	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98940250	T	T	98940250	1	4	191	0	1	0	0	0	0	0	0	0	16360	406	14	5		5	TMPO	12	98940250	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	5662001	98940250	34911645	1626	154036											
SLC25A3	5250	broad.mit.edu	37	chr12	98987861	98987861	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccgcagcagctccccaggGcccacgggccagccccgccg	12	22	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98987861	A	A	98987861	2	1	191	1	0	0	0	0	0	0	0	1	14607	1190	42	4		4	SLC25A3	12	98987861	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	47611	98987861	34864034	1627	154037											
APAF1	317	broad.mit.edu	37	chr12	99093376	99093376	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaaaagccaacttcagtCtgatttaaagaaagttaaaa	5	5	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99093376	T	T	99093376	1	4	191	0	1	0	0	0	0	0	0	0	757	928	32	4		4	APAF1	12	99093376	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	105515	99093376	34758519	1628	154038											
SLC5A8	160728	broad.mit.edu	37	chr12	101587480	101587480	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgcatcaccacagcctgTataatcacggatgcaaatcc	6	14	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101587480	C	C	101587480	3	2	191	1	0	0	0	0	1	0	0	0	14785	1628	57	5	1261	5	SLC5A8	12	101587480	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2494104	101587480	32264415	1629	154039											
MYBPC1	4604	broad.mit.edu	37	chr12	102067343	102067343	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccactctgggaaatatgatCtgcaagtcaaagtggacaaa	10	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102067343	A	A	102067343	3	1	191	1	0	0	0	0	1	0	0	0	10105	912	32	3	2908	3	MYBPC1	12	102067343	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	479863	102067343	31784552	1630	154040											
MYBPC1	4604	broad.mit.edu	37	chr12	102071040	102071040	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactgtcattgagcattatCatcgaaccagtgccaccatt	6	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102071040	A	A	102071040	3	1	191	1	0	0	0	0	1	0	0	0	10105	826	29	3	3141	3	MYBPC1	12	102071040	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3697	102071040	31780855	1631	154041											
GNPTAB	79158	broad.mit.edu	37	chr12	102164039	102164039	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggtttagtttttgaaagGaaggaagggaaggcaatgaa	14	1	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102164039	T	T	102164039	1	4	191	0	1	0	0	0	0	0	0	0	6609	1189	41	3		3	GNPTAB	12	102164039	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	92999	102164039	31687856	1632	154042											
STAB2	55576	broad.mit.edu	37	chr12	104136306	104136306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgtgagatgtgctggcCggggagattcgggcctgatt	19	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104136306	A	A	104136306	3	1	191	1	0	0	0	0	1	0	0	0	15356	652	23	1	6227	1	STAB2	12	104136306	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1972267	104136306	29715589	1633	154043											
HSP90B1	7184	broad.mit.edu	37	chr12	104326486	104326486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacctgaagatcactgttaGgtgaataagagtgcttttat	9	5	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104326486	T	T	104326486	1	4	191	0	1	0	0	0	0	0	0	0	7472	1015	35	2		2	HSP90B1	12	104326486	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	190180	104326486	29525409	1634	154044											
POLR3B	55703	broad.mit.edu	37	chr12	106760300	106760300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctatctgtttaggtgaaaGgccttgtgaaacagcatata	9	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106760300	T	T	106760300	3	4	191	1	0	0	0	0	1	0	0	0	12324	1000	35	2	122	2	POLR3B	12	106760300	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2433814	106760300	27091595	1635	154045											
POLR3B	55703	broad.mit.edu	37	chr12	106895214	106895214	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacgagccgtccttaccaGgtaagagaaaagtacttaca	8	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106895214	C	C	106895214	3	2	191	1	0	0	0	0	1	0	0	0	12324	1014	35	4	3200	4	POLR3B	12	106895214	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	134914	106895214	26956681	1636	154046											
BTBD11	121551	broad.mit.edu	37	chr12	108012033	108012033	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggactgacctggcggagaCagccccgccccccttgtgcg	15	16	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108012033	G	G	108012033	3	3	191	1	0	0	0	0	1	0	0	0	1548	478	17	4	2473	4	BTBD11	12	108012033	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1116819	108012033	25839862	1637	154047											
PRDM4	11108	broad.mit.edu	37	chr12	108145650	108145650	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggagccatttgggatttggGaatgctcgcctgcaacaccg	13	10	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108145650	A	A	108145650	3	1	191	1	0	0	0	0	1	0	0	0	12565	1174	41	4	1769	4	PRDM4	12	108145650	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	133617	108145650	25706245	1638	154048											
SART3	9733	broad.mit.edu	37	chr12	108936916	108936916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttcatactctgcaaatGtggcctccatatctattgaa	5	10	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108936916	T	T	108936916	3	4	191	1	0	0	0	0	1	0	0	0	13959	1377	48	3	2153	3	SART3	12	108936916	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	791266	108936916	24914979	1639	154049											
ACACB	32	broad.mit.edu	37	chr12	109644722	109644722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcagaagatctaccccGtgacagcagaggtcattatt	11	9	3	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109644722	T	T	109644722	1	4	191	0	1	0	0	0	0	0	0	0	107	1160	40	3		3	ACACB	12	109644722	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	707806	109644722	24207173	1640	154050											
FOXN4	121643	broad.mit.edu	37	chr12	109723261	109723261	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctccaccttctcgaagCacttgttcagagacaggttg	9	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109723261	A	A	109723261	3	1	191	1	0	0	0	0	1	0	0	0	6082	710	25	3	816	3	FOXN4	12	109723261	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	78539	109723261	24128634	1641	154051											
UBE3B	89910	broad.mit.edu	37	chr12	109959375	109959375	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaggaacgttaagaaacAgagaaatgtaaaataaaatg	10	2	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109959375	C	C	109959375	1	2	191	0	1	0	0	0	0	0	0	0	17006	203	7	5		5	UBE3B	12	109959375	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	236114	109959375	23892520	1642	154052											
C12orf51	283450	broad.mit.edu	37	chr12	112622024	112622024	+	Frame_Shift_Del	DEL	G	-	-													aagcctttgatggggcgggcGgcgaggggctggttgtccag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112622024	-	-	112622024	7	5	191	1	0	1	0	1	0	0	0	0	1709	1103	39	0	2574	0	C12orf51	12	112622024	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	2662649	112622024	21229871	1643	154053											
C12orf51	283450	broad.mit.edu	37	chr12	112654893	112654893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccccggggcaggcctcccCcagcgctggggtcagccagg	16	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112654893	A	A	112654893	3	1	191	1	0	0	0	0	1	0	0	0	1709	623	22	2	6199	2	C12orf51	12	112654893	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	32869	112654893	21197002	1644	154054											
RPH3A	22895	broad.mit.edu	37	chr12	113314541	113314541	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagttggagccagagaggaCcgaatgagccacccctccgg	14	13	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113314541	G	G	113314541	3	3	191	1	0	0	0	0	1	0	0	0	13662	506	18	4	1083	4	RPH3A	12	113314541	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	659648	113314541	20537354	1645	154055											
OAS3	4940	broad.mit.edu	37	chr12	113400594	113400594	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcccaaggcttccggacGgtgctggggctcgtgcaaca	15	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113400594	T	T	113400594	2	4	191	1	0	0	0	0	0	0	0	1	10896	1103	39	1		1	OAS3	12	113400594	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	86053	113400594	20451301	1646	154056											
OAS2	4939	broad.mit.edu	37	chr12	113444525	113444525	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccactttggagaatctgccCactggatatctttacgacgt	9	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113444525	T	T	113444525	1	4	191	0	1	0	0	0	0	0	0	0	10895	609	21	4		4	OAS2	12	113444525	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	43931	113444525	20407370	1647	154057											
DTX1	1840	broad.mit.edu	37	chr12	113495973	113495973	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgcaatagtgggggaCctggcccctgaggcagtggc	18	11	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113495973	A	A	113495973	1	1	191	0	1	0	0	0	0	0	0	0	4833	522	18	3		3	DTX1	12	113495973	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	51448	113495973	20355922	1648	154058											
FBXO21	23014	broad.mit.edu	37	chr12	117583913	117583914	+	Frame_Shift_Ins	INS	-	T	T													actcatctatgttctctttcINStttgcactgtaaatattctg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117583914	T	T	117583913	7	5	191	1	0	1	1	0	0	0	0	0	5790	912	32	0	24	0	FBXO21	12	117583913	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	4087940	117583913	16267982	1649	154059											
TAOK3	51347	broad.mit.edu	37	chr12	118598074	118598074	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctcattctttggagtaacTtccaactggtgattcttgag	9	8	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118598074	C	C	118598074	2	2	191	1	0	0	0	0	0	0	0	1	15668	1606	56	5		5	TAOK3	12	118598074	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	1014161	118598074	15253821	1650	154060											
P2RX4	5025	broad.mit.edu	37	chr12	121660769	121660769	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtctcaacaggcaggtgCgtagctttcaacgggtctgt	14	9	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121660769	T	T	121660769	2	4	191	1	0	0	0	0	0	0	0	1	11436	776	27	4		4	P2RX4	12	121660769	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	3062695	121660769	12191126	1651	154061											
VPS33A	65082	broad.mit.edu	37	chr12	122723133	122723133	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatttaaaaatatactcaCctggagaatctctcttttgt	4	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122723133	A	A	122723133	5	1	191	1	0	0	0	0	0	0	1	0	17328	521	18	3	503	3	VPS33A	12	122723133	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	1062364	122723133	11128762	1652	154062											
RSRC2	65117	broad.mit.edu	37	chr12	122991382	122991382	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcacatgtgaaactcaccTtaatacccatcaatttccta	4	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122991382	A	A	122991382	3	1	191	1	0	0	0	0	1	0	0	0	13826	1623	56	5	188	5	RSRC2	12	122991382	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	268249	122991382	10860513	1653	154063											
NCOR2	9612	broad.mit.edu	37	chr12	124826399	124826399	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcgtagttgagtgccaGcgaggactcgcggggcgaga	18	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124826399	A	A	124826399	2	1	191	1	0	0	0	0	0	0	0	1	10331	962	34	4		4	NCOR2	12	124826399	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1835017	124826399	9025496	1654	154064											
TMEM132D	121256	broad.mit.edu	37	chr12	129566543	129566543	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagccgcggcccctccgctCatcatcctcctcctcttcac	6	22	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129566543	A	A	129566543	4	1	191	1	0	0	0	0	0	1	0	0	16170	835	29	3	1627	3	TMEM132D	12	129566543	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4740144	129566543	4285352	1655	154065											
TMEM132D	121256	broad.mit.edu	37	chr12	130184738	130184738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctggacaggagctccagCtcggccacgcacagccccag	12	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130184738	A	A	130184738	3	1	191	1	0	0	0	0	1	0	0	0	16170	796	28	3	2746	3	TMEM132D	12	130184738	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	618195	130184738	3667157	1656	154066											
EP400	57634	broad.mit.edu	37	chr12	132522603	132522603	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcaggaaccttctgtcacgGaaaccattgcacccaaaatt	6	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132522603	T	T	132522603	4	4	191	1	0	0	0	0	0	1	0	0	5191	1175	41	3	6288	3	EP400	12	132522603	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2337865	132522603	1329292	1657	154067											
NOC4L	79050	broad.mit.edu	37	chr12	132630208	132630208	+	Missense_Mutation	SNP	A	C	C													gccacccctcctttcaggtcAaggtgggtcattgggctggc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132630208	C	C	132630208	3	2	191	1	0	0	0	0	1	0	0	0	10610	131	5	5	353	5	NOC4L	12	132630208	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	107605	132630208	1221687	1658	154068	662	2									
NOC4L	79050	broad.mit.edu	37	chr12	132630210	132630210	+	Missense_Mutation	SNP	G	T	T													cacccctcctttcaggtcaaGgtgggtcattgggctggcct							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132630210	T	T	132630210	3	4	191	1	0	0	0	0	1	0	0	0	10610	1014	35	2	355	2	NOC4L	12	132630210	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2	132630210	1221685	1659	154069	662	2									
P2RX2	22953	broad.mit.edu	37	chr12	133197533	133197533	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggactgacccgggctctCgaggggcctctcgtgtgccc	15	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133197533	A	A	133197533	1	1	191	0	1	0	0	0	0	0	0	0	11434	899	31	3		3	P2RX2	12	133197533	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	567323	133197533	654362	1660	154070											
POLE	5426	broad.mit.edu	37	chr12	133214629	133214629	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtactccacgtaagcgatGgcatcttccacacggcgctt	9	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133214629	A	A	133214629	2	1	191	1	0	0	0	0	0	0	0	1	12291	1335	47	4		4	POLE	12	133214629	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	17096	133214629	637266	1661	154071											
GOLGA3	2802	broad.mit.edu	37	chr12	133373168	133373168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccgccgagtccgccatcCtctgcagccgctccctctca	8	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133373168	A	A	133373168	3	1	191	1	0	0	0	0	1	0	0	0	6618	681	24	2	2637	2	GOLGA3	12	133373168	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	158539	133373168	478727	1662	154072											
TUBA3C	7278	broad.mit.edu	37	chr13	19751540	19751540	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacagtcagaatgttccaGggtcgtgtgggtggtcagga	17	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751540	T	T	19751540	3	4	191	1	0	0	0	0	1	0	0	0	16872	991	35	2	777	2	TUBA3C	13	19751540	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08		19751540	95418338	1663	154073											
TPTE2	93492	broad.mit.edu	37	chr13	20039551	20039551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatcaacccttgccaatgGgtcccaaaacacaaaatatt	5	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20039551	T	T	20039551	1	4	191	0	1	0	0	0	0	0	0	0	16555	1247	43	2		2	TPTE2	13	20039551	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	288011	20039551	95130327	1664	154074											
TPTE2	93492	broad.mit.edu	37	chr13	20066930	20066930	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatttgtgtatgtgcttggTgtgtgtacagctctatgcac	11	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20066930	A	A	20066930	1	1	191	0	1	0	0	0	0	0	0	0	16555	1711	59	5		5	TPTE2	13	20066930	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	27379	20066930	95102948	1665	154075											
TPTE2	93492	broad.mit.edu	37	chr13	20067795	20067795	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggaatgtctatttttctTtattagaaatgaggatgtat	8	4	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20067795	G	G	20067795	1	3	191	0	1	0	0	0	0	0	0	0	16555	1856	64	5		5	TPTE2	13	20067795	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	865	20067795	95102083	1666	154076											
TNFRSF19	55504	broad.mit.edu	37	chr13	24234412	24234412	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaacattggaaggatagctGatttgttctttaaaaataca	7	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24234412	A	A	24234412	1	1	191	0	1	0	0	0	0	0	0	0	16415	1305	45	4		4	TNFRSF19	13	24234412	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4166617	24234412	90935466	1667	154077											
FAM123A	219287	broad.mit.edu	37	chr13	25745661	25745661	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggtcccggtcccggcccCggcctccgccttcctcctgc	12	21	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25745661	T	T	25745661	3	4	191	1	0	0	0	0	1	0	0	0	5468	652	23	4	1922	4	FAM123A	13	25745661	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1511249	25745661	89424217	1668	154078											
FLT1	2321	broad.mit.edu	37	chr13	28893581	28893581	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggagaagatttcccacaGcaatactccgtaagaccaca	7	11	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28893581	A	A	28893581	2	1	191	1	0	0	0	0	0	0	0	1	5999	962	34	4		4	FLT1	13	28893581	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	3147920	28893581	86276297	1669	154079											
MTUS2	23281	broad.mit.edu	37	chr13	30072526	30072526	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttttgccgggaatcctggtCaacagctcatggctctctgc	11	12	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30072526	A	A	30072526	1	1	191	0	1	0	0	0	0	0	0	0	10060	841	29	3		3	MTUS2	13	30072526	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1178945	30072526	85097352	1670	154080											
USPL1	10208	broad.mit.edu	37	chr13	31221131	31221131	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggcacccacttaatgctgCccattttggtccatgtaaca	8	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31221131	G	G	31221131	3	3	191	1	0	0	0	0	1	0	0	0	17219	739	26	4	1197	4	USPL1	13	31221131	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1148605	31221131	83948747	1671	154081											
POSTN	10631	broad.mit.edu	37	chr13	38160919	38160919	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatctgctcttggacttacTctaaaagatgaaaggtcatc	7	9	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38160919	A	A	38160919	3	1	191	1	0	0	0	0	1	0	0	0	12354	1565	54	5	1829	5	POSTN	13	38160919	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	6939788	38160919	77008959	1672	154082											
KIAA0564	23078	broad.mit.edu	37	chr13	42335150	42335150	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agataagagcaagaagaacaGaaataaaactggtttataaa	8	3	0	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42335150	A	A	42335150	1	1	191	0	1	0	0	0	0	0	0	0	8255	957	33	4		4	KIAA0564	13	42335150	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4174231	42335150	72834728	1673	154083											
ZC3H13	23091	broad.mit.edu	37	chr13	46577534	46577534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggatattttttaaagcCttcttaaaaacagcagcgtt	6	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46577534	A	A	46577534	1	1	191	0	1	0	0	0	0	0	0	0	17691	696	24	2		2	ZC3H13	13	46577534	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4242384	46577534	68592344	1674	154084											
CAB39L	81617	broad.mit.edu	37	chr13	49956900	49956900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttggcattgcgatgcatGtactttaatcataatgttac	7	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49956900	T	T	49956900	1	4	191	0	1	0	0	0	0	0	0	0	2552	1392	48	3		3	CAB39L	13	49956900	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3379366	49956900	65212978	1675	154085											
THSD1	55901	broad.mit.edu	37	chr13	52960290	52960290	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccacatgtggcactacaCtggctccatggctgccacag	9	16	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52960290	A	A	52960290	3	1	191	1	0	0	0	0	1	0	0	0	16000	564	20	3	1513	3	THSD1	13	52960290	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3003390	52960290	62209588	1676	154086											
KLHL1	57626	broad.mit.edu	37	chr13	70275706	70275706	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctactaactctttcaacatCagtaggtaacgctacagaga	6	10	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70275706	T	T	70275706	1	4	191	0	1	0	0	0	0	0	0	0	8436	841	29	4		4	KLHL1	13	70275706	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	17315416	70275706	44894172	1677	154087											
KLHL1	57626	broad.mit.edu	37	chr13	70413323	70413323	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatacacaatagctgttaatAatgttttcaaagagatgaac	6	5	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70413323	T	T	70413323	1	4	191	0	1	0	0	0	0	0	0	0	8436	377	13	5		5	KLHL1	13	70413323	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	137617	70413323	44756555	1678	154088											
DCT	1638	broad.mit.edu	37	chr13	95131209	95131209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaagcttggagcatgggCctcacctgtgcacttgcagg	12	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95131209	A	A	95131209	1	1	191	0	1	0	0	0	0	0	0	0	4337	754	26	3		3	DCT	13	95131209	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	24717886	95131209	20038669	1679	154089											
OXGR1	27199	broad.mit.edu	37	chr13	97639466	97639466	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaactggtgaggtcgagaCaggctgatctgttggtcctg	15	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97639466	A	A	97639466	3	1	191	1	0	0	0	0	1	0	0	0	11426	478	17	3	469	3	OXGR1	13	97639466	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2508257	97639466	17530412	1680	154090											
OXGR1	27199	broad.mit.edu	37	chr13	97639828	97639828	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgctgctcttccaaggtctCattttgaaaatgtaagtgga	10	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97639828	G	G	97639828	3	3	191	1	0	0	0	0	1	0	0	0	11426	826	29	4	831	4	OXGR1	13	97639828	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	362	97639828	17530050	1681	154091											
SLC10A2	6555	broad.mit.edu	37	chr13	103703647	103703647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattctagccagaagaaaccCcagggagtaacccgccacag	9	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103703647	A	A	103703647	3	1	191	1	0	0	0	0	1	0	0	0	14487	623	22	2	337	2	SLC10A2	13	103703647	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6063819	103703647	11466231	1682	154092											
SLC10A2	6555	broad.mit.edu	37	chr13	103718110	103718110	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttattctctcctgtttgattCcttagtcatactttagatgc	5	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103718110	A	A	103718110	1	1	191	0	1	0	0	0	0	0	0	0	14487	870	30	3		3	SLC10A2	13	103718110	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	14463	103718110	11451768	1683	154093											
ARGLU1	55082	broad.mit.edu	37	chr13	107209283	107209283	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcctttaaagttagtcctGagaatccccccaaaataagt	6	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107209283	A	A	107209283	1	1	191	0	1	0	0	0	0	0	0	0	862	1305	45	4		4	ARGLU1	13	107209283	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	3491173	107209283	7960595	1684	154094											
COL4A2	1284	broad.mit.edu	37	chr13	111156436	111156436	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgtgttctctttgtggatCgccggccgtgccaggcgtgg	15	11	1	0	rs373463		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111156436	A	A	111156436	1	1	191	0	1	0	0	0	0	0	0	0	3722	899	31	3		3	COL4A2	13	111156436	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3947153	111156436	4013442	1685	154095											
MCF2L	23263	broad.mit.edu	37	chr13	113740611	113740611	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgcctccgtggaatacAccagcccagcaacttggcgg	11	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113740611	T	T	113740611	1	4	191	0	1	0	0	0	0	0	0	0	9472	174	6	5		5	MCF2L	13	113740611	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	2584175	113740611	1429267	1686	154096											
F7	2155	broad.mit.edu	37	chr13	113771780	113771780	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccacacctcctgtcccccCgcccaggtcctgttgttggt	8	18	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113771780	A	A	113771780	1	1	191	0	1	0	0	0	0	0	0	0	5392	667	23	1		1	F7	13	113771780	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	31169	113771780	1398098	1687	154097											
OR4K5	79317	broad.mit.edu	37	chr14	20389047	20389047	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcacacgagaccatatctttCagtggctgcatagcccaaat	8	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20389047	A	A	20389047	3	1	191	1	0	0	0	0	1	0	0	0	11167	825	29	3	284	3	OR4K5	14	20389047	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08		20389047	86960493	1688	154098											
PARP2	10038	broad.mit.edu	37	chr14	20815117	20815117	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattatatttatgagaccatCttcttgataattattgatga	5	5	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20815117	G	G	20815117	1	3	191	0	1	0	0	0	0	0	0	0	11555	928	32	4		4	PARP2	14	20815117	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	426070	20815117	86534423	1689	154099											
TEP1	7011	broad.mit.edu	37	chr14	20864809	20864809	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagtctctggagaatgagctCatggtggcgggaactgattc	15	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20864809	T	T	20864809	3	4	191	1	0	0	0	0	1	0	0	0	15881	835	29	4	6437	4	TEP1	14	20864809	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	49692	20864809	86484731	1690	154100											
NDRG2	57447	broad.mit.edu	37	chr14	21499168	21499168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatttctgtctaactgacCagggccaagaacgcccgaac	10	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21499168	A	A	21499168	1	1	191	0	1	0	0	0	0	0	0	0	10347	609	21	2		2	NDRG2	14	21499168	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	634359	21499168	85850372	1691	154101											
JUB	84962	broad.mit.edu	37	chr14	23450581	23450581	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaatccccgagggttctcCgcgggctccggcttctcgcc	11	18	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23450581	A	A	23450581	4	1	191	1	0	0	0	0	0	1	0	0	8038	661	23	1	753	1	JUB	14	23450581	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1951413	23450581	83898959	1692	154102											
MYH6	4624	broad.mit.edu	37	chr14	23856749	23856749	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggccctcacctctgcctcctCcagggctgactgcagctcca	9	19	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23856749	G	G	23856749	3	3	191	1	0	0	0	0	1	0	0	0	10132	864	30	4	1212	4	MYH6	14	23856749	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	406168	23856749	83492791	1693	154103											
MYH7	4625	broad.mit.edu	37	chr14	23885116	23885116	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcacctgtcagaggtcCctgcagtaacctaggggcag	13	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23885116	T	T	23885116	1	4	191	0	1	0	0	0	0	0	0	0	10133	638	22	4		4	MYH7	14	23885116	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	28367	23885116	83464424	1694	154104											
IPO4	79711	broad.mit.edu	37	chr14	24656934	24656934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgcaaaagctgtggcCaggcctccaagccttccttt	10	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24656934	A	A	24656934	3	1	191	1	0	0	0	0	1	0	0	0	7865	595	21	2	3002	2	IPO4	14	24656934	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	771818	24656934	82692606	1695	154105											
NYNRIN	57523	broad.mit.edu	37	chr14	24884157	24884157	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctccctacctgggcatcCcctgggatggaaaggctccc	10	16	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24884157	T	T	24884157	3	4	191	1	0	0	0	0	1	0	0	0	10891	623	22	4	3232	4	NYNRIN	14	24884157	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	227223	24884157	82465383	1696	154106											
NOVA1	4857	broad.mit.edu	37	chr14	26918030	26918030	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctccactcacagtgacaAccctctcttgcaagttgatc	6	14	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26918030	G	G	26918030	3	3	191	1	0	0	0	0	1	0	0	0	10649	43	2	5	868	5	NOVA1	14	26918030	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2033873	26918030	80431510	1697	154107											
HECTD1	25831	broad.mit.edu	37	chr14	31576758	31576758	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacaactcaagtcacaaaatGagaaatattcttacgtgacg	6	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31576758	C	C	31576758	1	2	191	0	1	0	0	0	0	0	0	0	7106	1305	45	4		4	HECTD1	14	31576758	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4658728	31576758	75772782	1698	154108											
BAZ1A	11177	broad.mit.edu	37	chr14	35234172	35234172	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cataaatgatcattaatcatCtattgctcaaaatcttaatg	3	7	5	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35234172	T	T	35234172	1	4	191	0	1	0	0	0	0	0	0	0	1334	928	32	4		4	BAZ1A	14	35234172	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3657414	35234172	72115368	1699	154109											
MBIP	51562	broad.mit.edu	37	chr14	36789785	36789785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcgattaagctccgtggCagcagccatgatatcttctc	11	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36789785	A	A	36789785	3	1	191	1	0	0	0	0	1	0	0	0	9442	710	25	3	1060	3	MBIP	14	36789785	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1555613	36789785	70559755	1700	154110											
SFTA3	253970	broad.mit.edu	37	chr14	36946141	36946141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccaagaacaaagtcagCgtccctactttaacgaatat	6	12	1	1	rs138661494	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36946141	A	A	36946141	1	1	191	0	1	0	0	0	0	0	0	0	14301	783	27	3		3	SFTA3	14	36946141	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	156356	36946141	70403399	1701	154111											
FBXO33	254170	broad.mit.edu	37	chr14	39870665	39870665	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaagccattatatagacccGaaagctggtgctctttcgtg	9	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39870665	T	T	39870665	2	4	191	1	0	0	0	0	0	0	0	1	5800	1057	37	3		3	FBXO33	14	39870665	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2924524	39870665	67478875	1702	154112											
LRFN5	145581	broad.mit.edu	37	chr14	42356335	42356335	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccttgggatgctgttgagaaGatggttagcttgcataccct	12	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356335	A	A	42356335	2	1	191	1	0	0	0	0	0	0	0	1	9028	933	33	4		4	LRFN5	14	42356335	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2485670	42356335	64993205	1703	154113											
FSCB	84075	broad.mit.edu	37	chr14	44973781	44973781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcaagagtgggagcctGtccatcattggtattagaca	10	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44973781	T	T	44973781	3	4	191	1	0	0	0	0	1	0	0	0	6126	1386	48	3	71	3	FSCB	14	44973781	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2617446	44973781	62375759	1704	154114											
FSCB	84075	broad.mit.edu	37	chr14	44975604	44975604	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgctggttgaaattcaGggtgttcactagcaaaaatc	10	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44975604	A	A	44975604	3	1	191	1	0	0	0	0	1	0	0	0	6126	1000	35	4	1894	4	FSCB	14	44975604	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1823	44975604	62373936	1705	154115											
FAM179B	23116	broad.mit.edu	37	chr14	45432037	45432037	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgcaaggaagctttgtatcGggcactgggccgagtgcttg	15	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45432037	C	C	45432037	3	2	191	1	0	0	0	0	1	0	0	0	5551	1116	39	4	415	4	FAM179B	14	45432037	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	456433	45432037	61917503	1706	154116											
FAM179B	23116	broad.mit.edu	37	chr14	45512869	45512869	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatttaacgaatgatcttGtcatttctttttctcatagg	5	9	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45512869	T	T	45512869	1	4	191	0	1	0	0	0	0	0	0	0	5551	1392	48	3		3	FAM179B	14	45512869	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	80832	45512869	61836671	1707	154117											
MDGA2	161357	broad.mit.edu	37	chr14	47342692	47342692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatatgcagtgtttgtgGgtccataagggtttttggga	13	4	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47342692	T	T	47342692	3	4	191	1	0	0	0	0	1	0	0	0	9500	1232	43	2	397	2	MDGA2	14	47342692	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1829823	47342692	60006848	1708	154118											
MAP4K5	11183	broad.mit.edu	37	chr14	50929563	50929563	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatggcttaaagaaaatgcTatcttcattttttcattcag	5	7	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50929563	A	A	50929563	1	1	191	0	1	0	0	0	0	0	0	0	9355	1537	53	5		5	MAP4K5	14	50929563	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	3586871	50929563	56419977	1709	154119											
NID2	22795	broad.mit.edu	37	chr14	52505472	52505472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaaccttacctttgacCgggccaatttgattggtcac	9	10	1	2	rs149933876		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52505472	A	A	52505472	2	1	191	1	0	0	0	0	0	0	0	1	10510	639	23	1		1	NID2	14	52505472	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1575909	52505472	54844068	1710	154120											
EXOC5	10640	broad.mit.edu	37	chr14	57699360	57699360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaatctgttatctatTattttctaatcattaaaaat	1	4	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57699360	A	A	57699360	1	1	191	0	1	0	0	0	0	0	0	0	5349	1769	61	5		5	EXOC5	14	57699360	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	5193888	57699360	49650180	1711	154121											
MUDENG	55745	broad.mit.edu	37	chr14	57749878	57749878	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtctttctggaactgtaaCttttggagccaagagccatg	10	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57749878	A	A	57749878	3	1	191	1	0	0	0	0	1	0	0	0	10077	565	20	3	1245	3	MUDENG	14	57749878	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	50518	57749878	49599662	1712	154122											
DACT1	51339	broad.mit.edu	37	chr14	59112625	59112625	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcaaaggccgaacaagcCgaaagcaagagggtgcccct	12	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59112625	T	T	59112625	2	4	191	1	0	0	0	0	0	0	0	1	4255	639	23	4		4	DACT1	14	59112625	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1362747	59112625	48236915	1713	154123											
DAAM1	23002	broad.mit.edu	37	chr14	59757934	59757934	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattattttctttcttctcaGgatgaactggacctcacaga	6	9	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59757934	T	T	59757934	5	4	191	1	0	0	0	0	0	0	1	0	4248	1014	35	2	189	2	DAAM1	14	59757934	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	645309	59757934	47591606	1714	154124											
SYT16	83851	broad.mit.edu	37	chr14	62536500	62536500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgttcgttgttgacacacGgagaagatggcacagaagta	13	8	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62536500	A	A	62536500	3	1	191	1	0	0	0	0	1	0	0	0	15591	1117	39	4	709	4	SYT16	14	62536500	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2778566	62536500	44813040	1715	154125											
KCNH5	27133	broad.mit.edu	37	chr14	63483472	63483472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtatatgggagtccaaGtaagcttaagccttttaatt	9	5	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63483472	T	T	63483472	1	4	191	0	1	0	0	0	0	0	0	0	8105	1044	36	3		3	KCNH5	14	63483472	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	946972	63483472	43866068	1716	154126											
SYNE2	23224	broad.mit.edu	37	chr14	64518958	64518958	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgacacatgatggcattcTagctaggcagcagtctgtgg	13	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64518958	C	C	64518958	3	2	191	1	0	0	0	0	1	0	0	0	15565	1522	53	5	8513	5	SYNE2	14	64518958	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1035486	64518958	42830582	1717	154127											
PLEKHG3	26030	broad.mit.edu	37	chr14	65210038	65210038	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtagagccacctctgtcgGgcagggtgggccgctgccgc	17	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65210038	C	C	65210038	3	2	191	1	0	0	0	0	1	0	0	0	12165	1232	43	4	3163	4	PLEKHG3	14	65210038	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	691080	65210038	42139502	1718	154128											
SMOC1	64093	broad.mit.edu	37	chr14	70419097	70419097	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcactatgcatttgcaacagGgaagcttggagtaagtctgt	11	7	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70419097	C	C	70419097	1	2	191	0	1	0	0	0	0	0	0	0	14915	1247	43	4		4	SMOC1	14	70419097	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	5209059	70419097	36930443	1719	154129											
PCNX	22990	broad.mit.edu	37	chr14	71513866	71513866	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctgactactgggggctGttataaacaatgtcttaagt	10	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71513866	T	T	71513866	1	4	191	0	1	0	0	0	0	0	0	0	11685	1392	48	3		3	PCNX	14	71513866	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1094769	71513866	35835674	1720	154130											
RGS6	9628	broad.mit.edu	37	chr14	72939587	72939587	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttactctttcaggattgacCggaaaaaagacaagacagaa	8	7	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72939587	A	A	72939587	2	1	191	1	0	0	0	0	0	0	0	1	13418	643	23	1		1	RGS6	14	72939587	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1425721	72939587	34409953	1721	154131											
RGS6	9628	broad.mit.edu	37	chr14	73029216	73029216	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgggcccgcggacccCacaggcaggcggcggcgctc	18	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73029216	A	A	73029216	1	1	191	0	1	0	0	0	0	0	0	0	13418	609	21	2		2	RGS6	14	73029216	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	89629	73029216	34320324	1722	154132											
HEATR4	399671	broad.mit.edu	37	chr14	73967198	73967198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactgtgcacaaccagggaaGgtaatgccctcttcaggtca	10	11	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73967198	T	T	73967198	1	4	191	0	1	0	0	0	0	0	0	0	7097	1015	35	2		2	HEATR4	14	73967198	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	937982	73967198	33382342	1723	154133											
ACOT6	641372	broad.mit.edu	37	chr14	74086211	74086211	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accaaagtcttgttccattgGaaaaggcgcaggtgcccttc	10	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74086211	C	C	74086211	3	2	191	1	0	0	0	0	1	0	0	0	154	1175	41	4	298	4	ACOT6	14	74086211	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	119013	74086211	33263329	1724	154134											
KCNK10	54207	broad.mit.edu	37	chr14	88693667	88693667	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctggatcctgtcaggcTaaagccaactggatcacagt	9	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88693667	A	A	88693667	1	1	191	0	1	0	0	0	0	0	0	0	8129	1537	53	5		5	KCNK10	14	88693667	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	14607456	88693667	18655873	1725	154135											
KCNK10	54207	broad.mit.edu	37	chr14	88792837	88792837	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaagcggttctgtctccctCtgtgccgccgcaacttccat	8	17	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88792837	T	T	88792837	1	4	191	0	1	0	0	0	0	0	0	0	8129	928	32	4		4	KCNK10	14	88792837	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	99170	88792837	18556703	1726	154136											
KCNK13	56659	broad.mit.edu	37	chr14	90650807	90650807	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctactttgactcactctaCttctgttttgtggctttcag	7	10	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90650807	A	A	90650807	4	1	191	1	0	0	0	0	0	1	0	0	8131	576	20	3	693	3	KCNK13	14	90650807	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1857970	90650807	16698733	1727	154137											
RIN3	79890	broad.mit.edu	37	chr14	93125862	93125862	+	Intron	DEL	G	-	-													gtgaggagctctctttgtatGggtccatgaccccaccctga							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93125862	-	-	93125862	6	5	191	0	1	1	0	1	0	0	0	0	13484	1363	47	0		0	RIN3	14	93125862	Intron	DEL	G	TCGA-64-5781-01A-01D-1625-08	2475055	93125862	14223678	1728	154138											
KIAA1409	57578	broad.mit.edu	37	chr14	94044105	94044105	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgacagctggaaatacCttccatagagtccccgaata	9	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94044105	T	T	94044105	1	4	191	0	1	0	0	0	0	0	0	0	8300	696	24	4		4	KIAA1409	14	94044105	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	918243	94044105	13305435	1729	154139											
C14orf49	161176	broad.mit.edu	37	chr14	95912351	95912351	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggctctctcctggccaaaGatgccaatcaggaggtcttt	11	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95912351	T	T	95912351	2	4	191	1	0	0	0	0	0	0	0	1	1789	932	33	3		3	C14orf49	14	95912351	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1868246	95912351	11437189	1730	154140											
AK7	122481	broad.mit.edu	37	chr14	96858456	96858456	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctccttggcaagcgagtGgcgctttcaccttagcaacc	10	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96858456	T	T	96858456	1	4	191	0	1	0	0	0	0	0	0	0	444	1363	47	2		2	AK7	14	96858456	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	946105	96858456	10491084	1731	154141											
AK7	122481	broad.mit.edu	37	chr14	96945030	96945030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattcaaggataatgtgaatGtccaggacccccagcaaagc	9	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96945030	T	T	96945030	1	4	191	0	1	0	0	0	0	0	0	0	444	1392	48	3		3	AK7	14	96945030	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	86574	96945030	10404510	1732	154142											
CYP46A1	10858	broad.mit.edu	37	chr14	100182205	100182205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcattcgcttcctgcGccaggtgggcagggactggg	18	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100182205	T	T	100182205	3	4	191	1	0	0	0	0	1	0	0	0	4215	1087	38	3	782	3	CYP46A1	14	100182205	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3237175	100182205	7167335	1733	154143											
C14orf68	283600	broad.mit.edu	37	chr14	100795129	100795129	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcagacacaggcgcagaagCagcagcggcggctttcggcc	15	14	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100795129	G	G	100795129	3	3	191	1	0	0	0	0	1	0	0	0	1791	711	25	4	412	4	C14orf68	14	100795129	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	612924	100795129	6554411	1734	154144											
DLK1	8788	broad.mit.edu	37	chr14	101194827	101194827	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcctcagaggcagcttgTaggggccacgcagaagcctg	15	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101194827	C	C	101194827	1	2	191	0	1	0	0	0	0	0	0	0	4604	1653	57	5		5	DLK1	14	101194827	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	399698	101194827	6154713	1735	154145											
CINP	51550	broad.mit.edu	37	chr14	102825902	102825902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataagacaggttttctgggCgttacagttccaagagtctt	11	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102825902	A	A	102825902	2	1	191	1	0	0	0	0	0	0	0	1	3462	755	27	3		3	CINP	14	102825902	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1631075	102825902	4523638	1736	154146											
TDRD9	122402	broad.mit.edu	37	chr14	104492515	104492515	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaatgaatgctgcatgctgGacaggattcctgggtggatt	15	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104492515	C	C	104492515	1	2	191	0	1	0	0	0	0	0	0	0	15858	1189	41	4		4	TDRD9	14	104492515	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1666613	104492515	2857025	1737	154147											
OR4N4	283694	broad.mit.edu	37	chr15	22332972	22332972	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccacaggtcatcaagcTggcctgcatggacacctatg	10	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22332972	A	A	22332972	1	1	191	0	1	0	0	0	0	0	0	0	11172	1595	55	5		5	OR4N4	15	22332972	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08		22332972	80198420	1738	154148											
C15orf2	23742	broad.mit.edu	37	chr15	24921212	24921212	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagcagccagcatcttcgtCgcccctaagaggccgtgtcc	10	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24921212	A	A	24921212	2	1	191	1	0	0	0	0	0	0	0	1	1797	871	31	3		3	C15orf2	15	24921212	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2588240	24921212	77610180	1739	154149											
C15orf2	23742	broad.mit.edu	37	chr15	24923342	24923342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaacccaaatttggggcCcctgatgggccgcagcagaa	11	14	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24923342	A	A	24923342	2	1	191	1	0	0	0	0	0	0	0	1	1797	610	22	2		2	C15orf2	15	24923342	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	2130	24923342	77608050	1740	154150											
C15orf2	23742	broad.mit.edu	37	chr15	24924327	24924327	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catgcagtggtatgggagggGatggcaccagatccatagtt	15	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24924327	A	A	24924327	3	1	191	1	0	0	0	0	1	0	0	0	1797	1174	41	4	3315	4	C15orf2	15	24924327	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	985	24924327	77607065	1741	154151											
GABRB3	2562	broad.mit.edu	37	chr15	26825654	26825654	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaccatttcgtataaatGcacggctaaataaactatca	4	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26825654	T	T	26825654	1	4	191	0	1	0	0	0	0	0	0	0	6228	1334	46	3		3	GABRB3	15	26825654	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1901327	26825654	75705738	1742	154152											
HERC2	8924	broad.mit.edu	37	chr15	28463681	28463681	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actaacattcgcagcagtccGcataaagtcttggtggcttc	9	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28463681	A	A	28463681	2	1	191	1	0	0	0	0	0	0	0	1	7125	1079	38	4		4	HERC2	15	28463681	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1638027	28463681	74067711	1743	154153											
HERC2	8924	broad.mit.edu	37	chr15	28482077	28482077	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagttcaaaaaaaataatcTgctgatcagcaaaaagcaaa	5	7	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28482077	C	C	28482077	1	2	191	0	1	0	0	0	0	0	0	0	7125	1595	55	5		5	HERC2	15	28482077	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	18396	28482077	74049315	1744	154154											
OTUD7A	161725	broad.mit.edu	37	chr15	31796143	31796143	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatattatcttcatggacccCggcagctgcgccatcctggg	11	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31796143	G	G	31796143	1	3	191	0	1	0	0	0	0	0	0	0	11412	667	23	4		4	OTUD7A	15	31796143	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3314066	31796143	70735249	1745	154155											
RYR3	6263	broad.mit.edu	37	chr15	33916196	33916196	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcctctcccaagcctcttTcatcccatgccccgtagaca	5	18	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33916196	C	C	33916196	3	2	191	1	0	0	0	0	1	0	0	0	13881	1783	62	5	2624	5	RYR3	15	33916196	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2120053	33916196	68615196	1746	154156											
RYR3	6263	broad.mit.edu	37	chr15	33925287	33925287	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaagacagaataaaacaagGatggacctatggcatccaac	8	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33925287	A	A	33925287	3	1	191	1	0	0	0	0	1	0	0	0	13881	1174	41	4	3099	4	RYR3	15	33925287	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	9091	33925287	68606105	1747	154157											
RYR3	6263	broad.mit.edu	37	chr15	33991970	33991970	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttctgtcgaattagccgGcaaaatcagaaggccatgtt	9	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33991970	C	C	33991970	2	2	191	1	0	0	0	0	0	0	0	1	13881	1190	42	4		4	RYR3	15	33991970	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	66683	33991970	68539422	1748	154158											
RYR3	6263	broad.mit.edu	37	chr15	34115218	34115218	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaatgctagattacctaaagGagaaaaaggatgctggattc	10	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34115218	C	C	34115218	3	2	191	1	0	0	0	0	1	0	0	0	13881	1175	41	4	11339	4	RYR3	15	34115218	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	123248	34115218	68416174	1749	154159											
ACTC1	70	broad.mit.edu	37	chr15	35083397	35083397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagggtacatagtggtgcctCcagataagacattgttggca	12	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35083397	A	A	35083397	3	1	191	1	0	0	0	0	1	0	0	0	195	855	30	3	233	3	ACTC1	15	35083397	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	968179	35083397	67447995	1750	154160											
MEIS2	4212	broad.mit.edu	37	chr15	37187207	37187207	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagaggaattttttcccCcacccaatgtaaagaaagca	6	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37187207	A	A	37187207	1	1	191	0	1	0	0	0	0	0	0	0	9561	638	22	2		2	MEIS2	15	37187207	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2103810	37187207	65344185	1751	154161											
BUB1B	701	broad.mit.edu	37	chr15	40462321	40462321	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accctctggatgtttgggatAggtgggtctttttatttcac	11	7	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40462321	T	T	40462321	3	4	191	1	0	0	0	0	1	0	0	0	1581	434	15	5	248	5	BUB1B	15	40462321	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	3275114	40462321	62069071	1752	154162											
C15orf23	90417	broad.mit.edu	37	chr15	40675010	40675010	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttcgctaggtctggctctGgcctctgagcgaaccttccg	11	14	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40675010	C	C	40675010	1	2	191	0	1	0	0	0	0	0	0	0	1798	1363	47	4		4	C15orf23	15	40675010	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	212689	40675010	61856382	1753	154163											
UBR1	197131	broad.mit.edu	37	chr15	43252977	43252977	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaacaagccattctcttTtttttttgagatggattctc	6	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43252977	G	G	43252977	1	3	191	0	1	0	0	0	0	0	0	0	17027	1856	64	5		5	UBR1	15	43252977	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	2577967	43252977	59278415	1754	154164											
UBR1	197131	broad.mit.edu	37	chr15	43348568	43348568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaacagtaaacatctgaaCtgaaagtgcagttatagaga	10	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43348568	A	A	43348568	3	1	191	1	0	0	0	0	1	0	0	0	17027	565	20	3	4142	3	UBR1	15	43348568	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	95591	43348568	59182824	1755	154165											
TGM5	9333	broad.mit.edu	37	chr15	43560424	43560424	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacattggccttgtagtaagTccagtcaatagctggtggat	11	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43560424	C	C	43560424	1	2	191	0	1	0	0	0	0	0	0	0	15956	1682	58	5		5	TGM5	15	43560424	5'Flank	SNP	T	TCGA-64-5781-01A-01D-1625-08	211856	43560424	58970968	1756	154166											
TGM7	116179	broad.mit.edu	37	chr15	43585556	43585556	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagaaagtggagggcagctCaggtgggaaaggcaggggcc	19	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43585556	T	T	43585556	1	4	191	0	1	0	0	0	0	0	0	0	15958	841	29	4		4	TGM7	15	43585556	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	25132	43585556	58945836	1757	154167											
SEMA6D	80031	broad.mit.edu	37	chr15	48022784	48022784	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttgccagcagctttcttctCggcccaggccaacagtctct	8	15	3	0	rs116672515	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48022784	A	A	48022784	1	1	191	0	1	0	0	0	0	0	0	0	14155	899	31	3		3	SEMA6D	15	48022784	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4437228	48022784	54508608	1758	154168											
MYEF2	50804	broad.mit.edu	37	chr15	48441490	48441490	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctatacctggtcccattCtatcaaagctggaactcatc	5	14	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48441490	T	T	48441490	3	4	191	1	0	0	0	0	1	0	0	0	10118	913	32	4	357	4	MYEF2	15	48441490	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	418706	48441490	54089902	1759	154169											
SLC12A1	6557	broad.mit.edu	37	chr15	48566838	48566838	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttgacatctctcaggttCttcaggtgcaaggtatgtac	10	8	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48566838	A	A	48566838	3	1	191	1	0	0	0	0	1	0	0	0	14495	913	32	3	2647	3	SLC12A1	15	48566838	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	125348	48566838	53964554	1760	154170											
HDC	3067	broad.mit.edu	37	chr15	50534961	50534961	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcccaggctctggcaccCctgatttgggagatgaggtt	14	11	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50534961	T	T	50534961	2	4	191	1	0	0	0	0	0	0	0	1	7082	622	22	4		4	HDC	15	50534961	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1968123	50534961	51996431	1761	154171											
TRPM7	54822	broad.mit.edu	37	chr15	50925278	50925278	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagatccatgtaagacctTtgaaaataatggattaatat	8	4	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50925278	G	G	50925278	1	3	191	0	1	0	0	0	0	0	0	0	16716	1856	64	5		5	TRPM7	15	50925278	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	390317	50925278	51606114	1762	154172											
MYO5C	55930	broad.mit.edu	37	chr15	52568025	52568025	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggaaactgttttgtcactCtactatttttaaatctcaat	5	7	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52568025	A	A	52568025	1	1	191	0	1	0	0	0	0	0	0	0	10174	928	32	3		3	MYO5C	15	52568025	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1642747	52568025	49963367	1763	154173											
UNC13C	440279	broad.mit.edu	37	chr15	54306940	54306940	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggaggtgttcagggtatcCaagggcagactgaaactgaa	14	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54306940	G	G	54306940	3	3	191	1	0	0	0	0	1	0	0	0	17112	595	21	4	1842	4	UNC13C	15	54306940	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1738915	54306940	48224452	1764	154174											
TLN2	83660	broad.mit.edu	37	chr15	63017352	63017352	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtaccttttgttatgacGttattaaattgtttgttgtt	9	3	0	1	rs148179202	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63017352	C	C	63017352	1	2	191	0	1	0	0	0	0	0	0	0	16071	1160	40	4		4	TLN2	15	63017352	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	8710412	63017352	39514040	1765	154175											
TLN2	83660	broad.mit.edu	37	chr15	63063229	63063229	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggtgtggcctccaagattCttgatcatcagcagcagatg	11	9	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63063229	G	G	63063229	3	3	191	1	0	0	0	0	1	0	0	0	16071	913	32	4	5417	4	TLN2	15	63063229	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	45877	63063229	39468163	1766	154176											
IGDCC4	57722	broad.mit.edu	37	chr15	65682616	65682616	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagccagatggatgtggagCtgtttgattccgcatggacg	15	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65682616	G	G	65682616	3	3	191	1	0	0	0	0	1	0	0	0	7639	797	28	4	1499	4	IGDCC4	15	65682616	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2619387	65682616	36848776	1767	154177											
RPL4	6124	broad.mit.edu	37	chr15	66792653	66792653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgctcgaagggctctttGgatctctgggcttttcaaga	13	8	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66792653	T	T	66792653	3	4	191	1	0	0	0	0	1	0	0	0	13706	1357	47	2	400	2	RPL4	15	66792653	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1110037	66792653	35738739	1768	154178											
LBXCOR1	390598	broad.mit.edu	37	chr15	68123046	68123046	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactgtctcctctaaaggcAgaaggtctagggtaggtccc	11	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68123046	T	T	68123046	1	4	191	0	1	0	0	0	0	0	0	0	8727	203	7	5		5	LBXCOR1	15	68123046	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1330393	68123046	34408346	1769	154179											
CORO2B	10391	broad.mit.edu	37	chr15	69011535	69011535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccaggcacggagccagCactgaccccggatgaatggc	13	14	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69011535	A	A	69011535	3	1	191	1	0	0	0	0	1	0	0	0	3789	710	25	3	1171	3	CORO2B	15	69011535	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	888489	69011535	33519857	1770	154180											
CCDC33	80125	broad.mit.edu	37	chr15	74623568	74623568	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgagaagatggagcgggtgCtggaggacaggctgcaggac	19	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74623568	T	T	74623568	2	4	191	1	0	0	0	0	0	0	0	1	2833	796	28	4		4	CCDC33	15	74623568	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	5612033	74623568	27907824	1771	154181											
CYP11A1	1583	broad.mit.edu	37	chr15	74631744	74631744	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgtggcatctcagcccTagctgcagcagcctgggggg	15	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74631744	C	C	74631744	1	2	191	0	1	0	0	0	0	0	0	0	4177	1537	53	5		5	CYP11A1	15	74631744	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	8176	74631744	27899648	1772	154182											
MAN2C1	4123	broad.mit.edu	37	chr15	75656607	75656607	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccactgatctcagggctctCagcagagctcccctgacccc	8	18	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75656607	T	T	75656607	1	4	191	0	1	0	0	0	0	0	0	0	9310	841	29	4		4	MAN2C1	15	75656607	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1024863	75656607	26874785	1773	154183											
LINGO1	84894	broad.mit.edu	37	chr15	77906791	77906791	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgtcctgtacctgggcGtagcgcacctccagcgtgcc	12	16	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77906791	A	A	77906791	2	1	191	1	0	0	0	0	0	0	0	1	8887	1140	40	4		4	LINGO1	15	77906791	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2250184	77906791	24624601	1774	154184											
HDGFRP3	50810	broad.mit.edu	37	chr15	83832671	83832671	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatgattttaataagacgTaagatgtcagagatcatcca	7	5	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83832671	A	A	83832671	1	1	191	0	1	0	0	0	0	0	0	0	7088	1653	57	5		5	HDGFRP3	15	83832671	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	5925880	83832671	18698721	1775	154185											
PDE8A	5151	broad.mit.edu	37	chr15	85679575	85679575	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctcagaccccactgacatgGagtagtcctcattctgagaa	8	13	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85679575	C	C	85679575	1	2	191	0	1	0	0	0	0	0	0	0	11747	1189	41	4		4	PDE8A	15	85679575	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1846904	85679575	16851817	1776	154186											
NTRK3	4916	broad.mit.edu	37	chr15	88726826	88726826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctggccctgcagccgcCctgtggattatctacacctc	10	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88726826	A	A	88726826	1	1	191	0	1	0	0	0	0	0	0	0	10803	638	22	2		2	NTRK3	15	88726826	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3047251	88726826	13804566	1777	154187											
AEN	64782	broad.mit.edu	37	chr15	89169735	89169735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgcagcagaaggcctgctCccgggaaagcctcagggccc	13	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89169735	T	T	89169735	3	4	191	1	0	0	0	0	1	0	0	0	351	855	30	4	297	4	AEN	15	89169735	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	442909	89169735	13361657	1778	154188											
POLG	5428	broad.mit.edu	37	chr15	89866008	89866008	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgttcctccagaaagaaatCattttgttgatttccagagc	8	9	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89866008	G	G	89866008	3	3	191	1	0	0	0	0	1	0	0	0	12295	826	29	4	1368	4	POLG	15	89866008	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	696273	89866008	12665384	1779	154189											
RHCG	51458	broad.mit.edu	37	chr15	90023382	90023382	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgtggggatcaggtctgatCatggtggccttcacccatca	12	11	5	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90023382	A	A	90023382	1	1	191	0	1	0	0	0	0	0	0	0	13435	841	29	3		3	RHCG	15	90023382	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	157374	90023382	12508010	1780	154190											
FES	2242	broad.mit.edu	37	chr15	91428191	91428191	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccatcctgaccctacagtCcccagtctcctcgtcccatg	6	19	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91428191	T	T	91428191	1	4	191	0	1	0	0	0	0	0	0	0	5877	870	30	4		4	FES	15	91428191	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1404809	91428191	11103201	1781	154191											
MSLNL	401827	broad.mit.edu	37	chr16	822938	822938	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggccagcagagccatgacCgtgtcctgggaggtgatgct	16	10	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	822938	T	T	822938	2	4	191	1	0	0	0	0	0	0	0	1	9976	639	23	4		4	MSLNL	16	822938	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08		822938	89531815	1782	154192											
GNPTG	84572	broad.mit.edu	37	chr16	1412444	1412444	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgagcctggcttctcttgGgtcctcagtgtacccaaccc	10	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1412444	C	C	1412444	1	2	191	0	1	0	0	0	0	0	0	0	6610	1247	43	4		4	GNPTG	16	1412444	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	589506	1412444	88942309	1783	154193											
CASKIN1	57524	broad.mit.edu	37	chr16	2237336	2237336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccactgggcccagcgccCctgggccccacactcacatc	9	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2237336	A	A	2237336	1	1	191	0	1	0	0	0	0	0	0	0	2692	638	22	2		2	CASKIN1	16	2237336	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	824892	2237336	88117417	1784	154194											
CORO7	79585	broad.mit.edu	37	chr16	4458075	4458075	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccctggggagtggggtggGgctggactgggaggcagcag	23	7	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4458075	A	A	4458075	1	1	191	0	1	0	0	0	0	0	0	0	3791	1247	43	4		4	CORO7	16	4458075	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2220739	4458075	85896678	1785	154195											
UBN1	29855	broad.mit.edu	37	chr16	4924548	4924548	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggaggcgttttatgtacaGaagaaaaaaggaactttgcg	12	4	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4924548	A	A	4924548	3	1	191	1	0	0	0	0	1	0	0	0	17018	943	33	4	2191	4	UBN1	16	4924548	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	466473	4924548	85430205	1786	154196											
A2BP1	54715	broad.mit.edu	37	chr16	7714825	7714825	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacgatcctcggttcctgtGttttggatcttgtgaccaga	10	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7714825	C	C	7714825	1	2	191	0	1	0	0	0	0	0	0	0	3	1392	48	4		4	A2BP1	16	7714825	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2790277	7714825	82639928	1787	154197											
GRIN2A	2903	broad.mit.edu	37	chr16	9934799	9934799	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaagataacttacttcaccGatcattccattccacacatt	2	12	2	1	rs146157761		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9934799	T	T	9934799	2	4	191	1	0	0	0	0	0	0	0	1	6845	1048	37	3		3	GRIN2A	16	9934799	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	2219974	9934799	80419954	1788	154198											
GRIN2A	2903	broad.mit.edu	37	chr16	9943652	9943652	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatggcacggtgttcctcAcacacgtctcggtcaggggg	14	12	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9943652	G	G	9943652	3	3	191	1	0	0	0	0	1	0	0	0	6845	159	6	5	3141	5	GRIN2A	16	9943652	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	8853	9943652	80411101	1789	154199											
GRIN2A	2903	broad.mit.edu	37	chr16	9984903	9984903	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggggtgcacctggtaGccttcctcagtgaaggataa	13	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9984903	T	T	9984903	2	4	191	1	0	0	0	0	0	0	0	1	6845	958	34	3		3	GRIN2A	16	9984903	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	41251	9984903	80369850	1790	154200											
PARN	5073	broad.mit.edu	37	chr16	14676033	14676033	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgactgaaagacatgtaatgCgtacctaggtaattggccat	10	7	0	3	rs144238272	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14676033	G	G	14676033	1	3	191	0	1	0	0	0	0	0	0	0	11547	783	27	4		4	PARN	16	14676033	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4691130	14676033	75678720	1791	154201											
NOMO1	23420	broad.mit.edu	37	chr16	14951512	14951512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgacattattgcaacagGgtaagcttatcgtgtggatt	12	6	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14951512	T	T	14951512	3	4	191	1	0	0	0	0	1	0	0	0	10626	1246	43	2	1262	2	NOMO1	16	14951512	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	275479	14951512	75403241	1792	154202											
MYH11	4629	broad.mit.edu	37	chr16	15808819	15808819	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatggcctcgttgctctcCgtggcctcatccagctcccg	9	19	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15808819	T	T	15808819	2	4	191	1	0	0	0	0	0	0	0	1	10125	639	23	4		4	MYH11	16	15808819	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	857307	15808819	74545934	1793	154203											
XYLT1	64131	broad.mit.edu	37	chr16	17228602	17228602	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggctgtctgctgtactcaTgggattaaaaatagaaaagc	11	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17228602	A	A	17228602	1	1	191	0	1	0	0	0	0	0	0	0	17590	1479	51	5		5	XYLT1	16	17228602	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1419783	17228602	73126151	1794	154204											
GPRC5B	51704	broad.mit.edu	37	chr16	19873269	19873269	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtctttttcccaagctgcCgttgggaaatcctgctgttc	11	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19873269	T	T	19873269	3	4	191	1	0	0	0	0	1	0	0	0	6791	652	23	4	162	4	GPRC5B	16	19873269	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2644667	19873269	70481484	1795	154205											
UMOD	7369	broad.mit.edu	37	chr16	20352594	20352594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagggctgcgtgtaggaagGggtctggaagagcgccatcc	18	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20352594	T	T	20352594	3	4	191	1	0	0	0	0	1	0	0	0	17105	1232	43	2	546	2	UMOD	16	20352594	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	479325	20352594	70002159	1796	154206											
ACSM2A	123876	broad.mit.edu	37	chr16	20487038	20487038	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcttccagaaactctggaGaactggagggcccagacagg	12	11	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20487038	A	A	20487038	2	1	191	1	0	0	0	0	0	0	0	1	183	933	33	4		4	ACSM2A	16	20487038	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	134444	20487038	69867715	1797	154207											
ACSM2B	348158	broad.mit.edu	37	chr16	20548547	20548547	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaaaagaaagagaaagaaGaggggaatccaaatgaatgt	14	2	0	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20548547	A	A	20548547	1	1	191	0	1	0	0	0	0	0	0	0	184	957	33	4		4	ACSM2B	16	20548547	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	61509	20548547	69806206	1798	154208											
ACSM2B	348158	broad.mit.edu	37	chr16	20556416	20556416	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagaacatttgtcctccCtcatcccgtttagtgctccc	5	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20556416	T	T	20556416	1	4	191	0	1	0	0	0	0	0	0	0	184	696	24	4		4	ACSM2B	16	20556416	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	7869	20556416	69798337	1799	154209											
ACSM1	116285	broad.mit.edu	37	chr16	20648142	20648142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgttaggtggcaggatGctgcccttgtcatcaatgac	12	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20648142	T	T	20648142	3	4	191	1	0	0	0	0	1	0	0	0	182	1310	46	3	535	3	ACSM1	16	20648142	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	91726	20648142	69706611	1800	154210											
ZP2	7783	broad.mit.edu	37	chr16	21215803	21215803	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagaatcatcttggcaagTatatatccaagtaatgggca	9	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21215803	C	C	21215803	1	2	191	0	1	0	0	0	0	0	0	0	18345	1653	57	5		5	ZP2	16	21215803	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	567661	21215803	69138950	1801	154211											
OTOA	146183	broad.mit.edu	37	chr16	21698943	21698943	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagagcggctccctcgggaCctgcgcgaggatgcctttaa	13	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21698943	G	G	21698943	3	3	191	1	0	0	0	0	1	0	0	0	11396	506	18	4	669	4	OTOA	16	21698943	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	483140	21698943	68655810	1802	154212											
OTOA	146183	broad.mit.edu	37	chr16	21742117	21742117	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaacagatgtccaccaCagcatgttttttcactttac	6	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21742117	T	T	21742117	1	4	191	0	1	0	0	0	0	0	0	0	11396	493	17	4		4	OTOA	16	21742117	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	43174	21742117	68612636	1803	154213											
LOC100132247	100132247	broad.mit.edu	37	chr16	22545922	22545922	+	Frame_Shift_Del	DEL	C	-	-													ctgccgagcgtctgcgggggCcgcttccaccctcagcggat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22545922	-	-	22545922	7	5	191	1	0	1	0	1	0	0	0	0	8944	739	26	0	1644	0	LOC100132247	16	22545922	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	803805	22545922	67808831	1804	154214											
PRKCB	5579	broad.mit.edu	37	chr16	24192147	24192147	+	Frame_Shift_Del	DEL	G	-	-													aacgtgatgctcgattctgaGggacacatcaagattgccga							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	24192147	-	-	24192147	7	5	191	1	0	1	0	1	0	0	0	0	12614	991	35	0	1481	0	PRKCB	16	24192147	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	1646225	24192147	66162606	1805	154215											
SLC5A11	115584	broad.mit.edu	37	chr16	24895464	24895464	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggctacagtaagtggggtCcccgggtcactggggcggac	18	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24895464	A	A	24895464	1	1	191	0	1	0	0	0	0	0	0	0	14777	870	30	3		3	SLC5A11	16	24895464	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	703317	24895464	65459289	1806	154216											
SLC5A11	115584	broad.mit.edu	37	chr16	24909447	24909447	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtgagaacacagctggGggaagaggtcattggtatgt	16	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24909447	A	A	24909447	1	1	191	0	1	0	0	0	0	0	0	0	14777	1247	43	4		4	SLC5A11	16	24909447	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	13983	24909447	65445306	1807	154217											
ZKSCAN2	342357	broad.mit.edu	37	chr16	25255428	25255428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctgaaggcttttgaaCttggttcggcactgttctgg	11	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25255428	A	A	25255428	3	1	191	1	0	0	0	0	1	0	0	0	17813	564	20	3	1252	3	ZKSCAN2	16	25255428	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	345981	25255428	65099325	1808	154218											
GTF3C1	2975	broad.mit.edu	37	chr16	27512582	27512582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccttcctcagacaggttcCgcaccaagcggacaatggac	10	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27512582	A	A	27512582	3	1	191	1	0	0	0	0	1	0	0	0	6937	652	23	1	4442	1	GTF3C1	16	27512582	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2257154	27512582	62842171	1809	154219											
KIAA0556	23247	broad.mit.edu	37	chr16	27692863	27692863	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctccagtaagagttccGggggcccctgagcaggggag	17	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27692863	A	A	27692863	1	1	191	0	1	0	0	0	0	0	0	0	8253	1131	39	4		4	KIAA0556	16	27692863	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	180281	27692863	62661890	1810	154220											
SBK1	388228	broad.mit.edu	37	chr16	28330425	28330425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagccccttcatcatcaaGgtctttgacgtggtctttga	8	12	5	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28330425	T	T	28330425	3	4	191	1	0	0	0	0	1	0	0	0	13972	991	35	2	342	2	SBK1	16	28330425	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	637562	28330425	62024328	1811	154221											
SBK1	388228	broad.mit.edu	37	chr16	28331561	28331561	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgacttcggcatgacGcgccgcgtgggctgccgcgt	16	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28331561	T	T	28331561	2	4	191	1	0	0	0	0	0	0	0	1	13972	1074	38	3		3	SBK1	16	28331561	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1136	28331561	62023192	1812	154222											
SRCAP	10847	broad.mit.edu	37	chr16	30740171	30740171	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaactacaaaaagcatAgtgtatttttggatcccatg	8	6	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30740171	G	G	30740171	1	3	191	0	1	0	0	0	0	0	0	0	15253	435	15	5		5	SRCAP	16	30740171	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	2408610	30740171	59614582	1813	154223											
SETD1A	9739	broad.mit.edu	37	chr16	30977436	30977436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagaggggcatactcacGggaggcctaccacctgccca	14	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30977436	T	T	30977436	3	4	191	1	0	0	0	0	1	0	0	0	14243	1116	39	1	2260	1	SETD1A	16	30977436	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	237265	30977436	59377317	1814	154224											
ITGAX	3687	broad.mit.edu	37	chr16	31391194	31391194	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccacccccaggtacccaaGgactgcatgtggctcctcca	8	18	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31391194	T	T	31391194	1	4	191	0	1	0	0	0	0	0	0	0	7959	1015	35	2		2	ITGAX	16	31391194	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	413758	31391194	58963559	1815	154225											
ZNF267	10308	broad.mit.edu	37	chr16	31906244	31906244	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccctgggttagtgccagCatttctggaatctcagtgtg	11	10	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31906244	T	T	31906244	1	4	191	0	1	0	0	0	0	0	0	0	17932	725	25	4		4	ZNF267	16	31906244	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	515050	31906244	58448509	1816	154226											
ZNF267	10308	broad.mit.edu	37	chr16	31927483	31927483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaatgtgaagaatgtgGcaaagccttcaactataggt	9	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31927483	T	T	31927483	3	4	191	1	0	0	0	0	1	0	0	0	17932	1203	42	3	1927	3	ZNF267	16	31927483	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	21239	31927483	58427270	1817	154227											
SHCBP1	79801	broad.mit.edu	37	chr16	46655349	46655349	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgatagtcgggccgaggcCgtggaccaattagagtccgg	15	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46655349	A	A	46655349	1	1	191	0	1	0	0	0	0	0	0	0	14387	667	23	1		1	SHCBP1	16	46655349	5'Flank	SNP	C	TCGA-64-5781-01A-01D-1625-08	14727866	46655349	43699404	1818	154228											
ABCC12	94160	broad.mit.edu	37	chr16	48117862	48117862	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgtgatcgcagttgagaacTgtgttgaggcggtgggcgat	17	6	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48117862	A	A	48117862	2	1	191	1	0	0	0	0	0	0	0	1	52	1567	55	5		5	ABCC12	16	48117862	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	1462513	48117862	42236891	1819	154229											
ABCC11	85320	broad.mit.edu	37	chr16	48256510	48256510	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtcccagctgcttaccTctcctgaggtgatgtgtatt	11	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48256510	A	A	48256510	3	1	191	1	0	0	0	0	1	0	0	0	51	1565	54	5	3472	5	ABCC11	16	48256510	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	138648	48256510	42098243	1820	154230											
ZNF423	23090	broad.mit.edu	37	chr16	49559190	49559190	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgccaaggaaagaggaagAgcacacactgggatcccgca	12	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49559190	T	T	49559190	1	4	191	0	1	0	0	0	0	0	0	0	18025	319	11	5		5	ZNF423	16	49559190	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1302680	49559190	40795563	1821	154231											
GNAO1	2775	broad.mit.edu	37	chr16	56374811	56374811	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaatggttcacagacacGtccatcatcctgtttcttaa	5	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56374811	T	T	56374811	2	4	191	1	0	0	0	0	0	0	0	1	6572	1132	40	3		3	GNAO1	16	56374811	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	6815621	56374811	33979942	1822	154232											
CCDC113	29070	broad.mit.edu	37	chr16	58293790	58293790	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaattacgtttgaaaaaTgtttctctcaaagttcagag	8	5	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58293790	A	A	58293790	3	1	191	1	0	0	0	0	1	0	0	0	2776	1461	51	5	597	5	CCDC113	16	58293790	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	1918979	58293790	32060963	1823	154233											
CDH8	1006	broad.mit.edu	37	chr16	61688056	61688056	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaacaagcatataatttcaCaagcaacacactatatatgt	3	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61688056	T	T	61688056	1	4	191	0	1	0	0	0	0	0	0	0	3146	493	17	4		4	CDH8	16	61688056	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3394266	61688056	28666697	1824	154234											
CDH8	1006	broad.mit.edu	37	chr16	61854978	61854978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccttcctattgcagtgCcaagaaccacatcttccggt	6	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61854978	A	A	61854978	3	1	191	1	0	0	0	0	1	0	0	0	3146	739	26	3	1552	3	CDH8	16	61854978	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	166922	61854978	28499775	1825	154235											
CDH11	1009	broad.mit.edu	37	chr16	64984775	64984775	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagagcagtgccccgttcaCgtcgcacccgcagactttga	12	14	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64984775	T	T	64984775	3	4	191	1	0	0	0	0	1	0	0	0	3127	536	19	4	609	4	CDH11	16	64984775	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3129797	64984775	25369978	1826	154236											
CDH11	1009	broad.mit.edu	37	chr16	65032455	65032455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagagcaggcctcccacaCcgtacgcacccacattggac	9	17	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65032455	A	A	65032455	1	1	191	0	1	0	0	0	0	0	0	0	3127	522	18	3		3	CDH11	16	65032455	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	47680	65032455	25322298	1827	154237											
CTCF	10664	broad.mit.edu	37	chr16	67670753	67670753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagcccaaacagaaccaGcgtaagttgttcatctctgc	7	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67670753	T	T	67670753	3	4	191	1	0	0	0	0	1	0	0	0	4034	985	34	3	2032	3	CTCF	16	67670753	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2638298	67670753	22684000	1828	154238											
NUTF2	10204	broad.mit.edu	37	chr16	67899124	67899124	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgatagaacccaactaggcGcaatttacgtaagtttccag	8	9	0	2	rs146730920		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67899124	C	C	67899124	3	2	191	1	0	0	0	0	1	0	0	0	10874	1087	38	4	93	4	NUTF2	16	67899124	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	228371	67899124	22455629	1829	154239											
EDC4	23644	broad.mit.edu	37	chr16	67916257	67916257	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagggcccaagatgtgggtgGaggtggtggttcctgggcct	19	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67916257	A	A	67916257	1	1	191	0	1	0	0	0	0	0	0	0	4948	1189	41	4		4	EDC4	16	67916257	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	17133	67916257	22438496	1830	154240											
PSKH1	5681	broad.mit.edu	37	chr16	67942625	67942625	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagcaggtcctgccagcctCgctggagaggatgccctcgt	14	13	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67942625	T	T	67942625	1	4	191	0	1	0	0	0	0	0	0	0	12770	899	31	4		4	PSKH1	16	67942625	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	26368	67942625	22412128	1831	154241											
PSKH1	5681	broad.mit.edu	37	chr16	67943486	67943486	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccatacaccaactcagtGgacatgtgggcgctgggcgt	13	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67943486	T	T	67943486	2	4	191	1	0	0	0	0	0	0	0	1	12770	1335	47	2		2	PSKH1	16	67943486	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	861	67943486	22411267	1832	154242											
TMCO7	79613	broad.mit.edu	37	chr16	68961558	68961558	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accctgatccggtcatccaaGaactcgctgttgatctccgc	8	15	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68961558	A	A	68961558	3	1	191	1	0	0	0	0	1	0	0	0	16124	943	33	4	2265	4	TMCO7	16	68961558	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1018072	68961558	21393195	1833	154243											
VPS4A	27183	broad.mit.edu	37	chr16	69350147	69350147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaggcccacagcgacaaGgccaaggagagcattcgagc	14	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69350147	T	T	69350147	3	4	191	1	0	0	0	0	1	0	0	0	17339	991	35	2	163	2	VPS4A	16	69350147	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	388589	69350147	21004606	1834	154244											
PDPR	55066	broad.mit.edu	37	chr16	70154580	70154580	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctgtggcctatcacctctCcaaaatggggtggaaggata	11	9	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70154580	G	G	70154580	3	3	191	1	0	0	0	0	1	0	0	0	11783	855	30	4	187	4	PDPR	16	70154580	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	804433	70154580	20200173	1835	154245											
ST3GAL2	6483	broad.mit.edu	37	chr16	70415690	70415690	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacgccagtcttccggaactCgcccgcgtaccggttgttct	10	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70415690	G	G	70415690	3	3	191	1	0	0	0	0	1	0	0	0	15333	893	31	4	101	4	ST3GAL2	16	70415690	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	261110	70415690	19939063	1836	154246											
HYDIN	54768	broad.mit.edu	37	chr16	70902577	70902577	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacctggtctgcagggagctGaaacataatcctggagagct	13	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70902577	T	T	70902577	3	4	191	1	0	0	0	0	1	0	0	0	7537	1299	45	3	4243	3	HYDIN	16	70902577	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	486887	70902577	19452176	1837	154247											
HYDIN	54768	broad.mit.edu	37	chr16	70926292	70926292	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaacaggctggtgctcaAtcttcacttccttttttgca	8	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70926292	T	T	70926292	3	4	191	1	0	0	0	0	1	0	0	0	7537	101	4	5	6100	5	HYDIN	16	70926292	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	23715	70926292	19428461	1838	154248											
PHLPP2	23035	broad.mit.edu	37	chr16	71692471	71692471	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatctcattcacactcctttCttcttctttataaaaggaaa	2	10	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71692471	G	G	71692471	1	3	191	0	1	0	0	0	0	0	0	0	11950	928	32	4		4	PHLPP2	16	71692471	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	766179	71692471	18662282	1839	154249											
WDR59	79726	broad.mit.edu	37	chr16	74951836	74951836	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcatacataccctctgcatCtgggaatccacccgccacat	6	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74951836	G	G	74951836	3	3	191	1	0	0	0	0	1	0	0	0	17435	912	32	4	2031	4	WDR59	16	74951836	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3259365	74951836	15402917	1840	154250											
BCAR1	9564	broad.mit.edu	37	chr16	75263990	75263990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactacaggccgagacctgGgcaccctgggctgggcttct	14	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75263990	A	A	75263990	1	1	191	0	1	0	0	0	0	0	0	0	1353	1247	43	4		4	BCAR1	16	75263990	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	312154	75263990	15090763	1841	154251											
BCAR1	9564	broad.mit.edu	37	chr16	75268814	75268814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacgtagtcatagtcctcCatccagcccccctcgctgtt	8	16	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75268814	A	A	75268814	3	1	191	1	0	0	0	0	1	0	0	0	1353	594	21	2	641	2	BCAR1	16	75268814	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4824	75268814	15085939	1842	154252											
CNTNAP4	85445	broad.mit.edu	37	chr16	76389295	76389295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagagaatggaggtcaccGctgtggccactcaaggggga	17	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76389295	T	T	76389295	3	4	191	1	0	0	0	0	1	0	0	0	3681	1087	38	3	300	3	CNTNAP4	16	76389295	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1120481	76389295	13965458	1843	154253											
VAT1L	57687	broad.mit.edu	37	chr16	78011438	78011438	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggactctgtcagatgctcAgagatgacgaggctgggttg	15	7	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78011438	T	T	78011438	1	4	191	0	1	0	0	0	0	0	0	0	17257	203	7	5		5	VAT1L	16	78011438	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1622143	78011438	12343315	1844	154254											
CLEC3A	10143	broad.mit.edu	37	chr16	78056549	78056549	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaatggacttgtaatttGcatcctggtgatcaccttac	8	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78056549	T	T	78056549	3	4	191	1	0	0	0	0	1	0	0	0	3542	1319	46	3	28	3	CLEC3A	16	78056549	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	45111	78056549	12298204	1845	154255											
WWOX	51741	broad.mit.edu	37	chr16	78859467	78859467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccccagaggtctgtgtgCcattgcccaggtcgagtctg	14	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78859467	T	T	78859467	1	4	191	0	1	0	0	0	0	0	0	0	17541	754	26	4		4	WWOX	16	78859467	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	802918	78859467	11495286	1846	154256											
PLCG2	5336	broad.mit.edu	37	chr16	81960739	81960739	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtacttcccatccaactacGtcgaggacatctcaactgca	6	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81960739	A	A	81960739	3	1	191	1	0	0	0	0	1	0	0	0	12131	1145	40	4	2556	4	PLCG2	16	81960739	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3101272	81960739	8394014	1847	154257											
HSD17B2	3294	broad.mit.edu	37	chr16	82131939	82131939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgccttgctcactatttGcctattggcatatatgatta	6	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82131939	T	T	82131939	3	4	191	1	0	0	0	0	1	0	0	0	7451	1310	46	3	1080	3	HSD17B2	16	82131939	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	171200	82131939	8222814	1848	154258											
MPHOSPH6	10200	broad.mit.edu	37	chr16	82197792	82197792	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctgagtccagtccccttTgcataaactgtgaaaacaaa	6	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82197792	G	G	82197792	3	3	191	1	0	0	0	0	1	0	0	0	9820	1812	63	5	439	5	MPHOSPH6	16	82197792	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	65853	82197792	8156961	1849	154259											
LRRC50	123872	broad.mit.edu	37	chr16	84203839	84203839	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagccagaggggaccctcCcagctgagaccctgctactg	12	14	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84203839	T	T	84203839	3	4	191	1	0	0	0	0	1	0	0	0	9096	623	22	4	1435	4	LRRC50	16	84203839	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2006047	84203839	6150914	1850	154260											
KCNG4	93107	broad.mit.edu	37	chr16	84256462	84256462	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacaccgccagcgacacGtagtatggggagatggccag	14	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84256462	T	T	84256462	4	4	191	1	0	0	0	0	0	1	0	0	8100	1140	40	3	640	3	KCNG4	16	84256462	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	52623	84256462	6098291	1851	154261											
KLHL36	79786	broad.mit.edu	37	chr16	84690773	84690773	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacattgactacgtcctGgagacggctcacctgctgca	11	13	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84690773	T	T	84690773	2	4	191	1	0	0	0	0	0	0	0	1	8460	1335	47	2		2	KLHL36	16	84690773	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	434311	84690773	5663980	1852	154262											
COX4I1	1327	broad.mit.edu	37	chr16	85838628	85838628	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggaggtggcccatgtcaaGcacctgtctgccagccagaa	12	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85838628	C	C	85838628	3	2	191	1	0	0	0	0	1	0	0	0	3801	962	34	4	165	4	COX4I1	16	85838628	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1147855	85838628	4516125	1853	154263											
MTHFSD	64779	broad.mit.edu	37	chr16	86575887	86575887	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgagaagtggattttccatCaggtccagtggaagaagaaa	12	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86575887	T	T	86575887	1	4	191	0	1	0	0	0	0	0	0	0	10027	841	29	4		4	MTHFSD	16	86575887	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	737259	86575887	3778866	1854	154264											
ZC3H18	124245	broad.mit.edu	37	chr16	88694450	88694451	+	Frame_Shift_Ins	INS	-	A	A													ccagcagccctcgacaccccINSagcaggcaccccccgggcag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88694451	A	A	88694450	7	5	191	1	0	1	1	0	0	0	0	0	17694	595	21	0	2446	0	ZC3H18	16	88694450	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	2118563	88694450	1660303	1855	154265											
SPG7	6687	broad.mit.edu	37	chr16	89611205	89611205	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagccaggatcccagcctctCccactccacctgggccgccc	9	21	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89611205	T	T	89611205	1	4	191	0	1	0	0	0	0	0	0	0	15162	870	30	4		4	SPG7	16	89611205	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	916755	89611205	743548	1856	154266											
SPATA22	84690	broad.mit.edu	37	chr17	3352051	3352051	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttttctaaatatttacctCatatttttaaaaatgtaaat	2	4	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3352051	A	A	3352051	1	1	191	0	1	0	0	0	0	0	0	0	15124	841	29	3		3	SPATA22	17	3352051	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08		3352051	77843159	1857	154267											
TRPV1	7442	broad.mit.edu	37	chr17	3474934	3474934	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagttcacctcgtccaccCtgcagggtaaggggtcggga	13	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3474934	A	A	3474934	5	1	191	1	0	0	0	0	0	0	1	0	16720	695	24	2	296	2	TRPV1	17	3474934	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	122883	3474934	77720276	1858	154268											
TRPV1	7442	broad.mit.edu	37	chr17	3477168	3477168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagctatcggggggcctgCaggcaggcccccgccacctg	16	15	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3477168	A	A	3477168	3	1	191	1	0	0	0	0	1	0	0	0	16720	710	25	3		3	TRPV1	17	3477168	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2234	3477168	77718042	1859	154269											
P2RX5	5026	broad.mit.edu	37	chr17	3593445	3593445	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccttcaggaatggctccCtgaaaaccaacccagaacag	7	15	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3593445	A	A	3593445	5	1	191	1	0	0	0	0	0	0	1	0	11437	695	24	2	763	2	P2RX5	17	3593445	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	116277	3593445	77601765	1860	154270											
ZZEF1	23140	broad.mit.edu	37	chr17	4005736	4005736	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaaggaagaccaagcTgtaagctaaaatatgaagaa	9	4	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4005736	A	A	4005736	1	1	191	0	1	0	0	0	0	0	0	0	18384	1595	55	5		5	ZZEF1	17	4005736	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	412291	4005736	77189474	1861	154271											
PFN1	5216	broad.mit.edu	37	chr17	4851651	4851651	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtcctgacaggtcccgtcCgccatgaggttgtcgatgta	13	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4851651	A	A	4851651	2	1	191	1	0	0	0	0	0	0	0	1	11862	639	23	1		1	PFN1	17	4851651	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	845915	4851651	76343559	1862	154272											
ENO3	2027	broad.mit.edu	37	chr17	4856631	4856631	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagctagatgggaccgagaAtaagtgtgagtgaagggcta	16	4	0	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4856631	G	G	4856631	3	3	191	1	0	0	0	0	1	0	0	0	5165	101	4	5	319	5	ENO3	17	4856631	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	4980	4856631	76338579	1863	154273											
SPAG7	9552	broad.mit.edu	37	chr17	4863265	4863265	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccagcccaaacccccacCcctcccaggtggtgggcttc	9	21	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4863265	A	A	4863265	1	1	191	0	1	0	0	0	0	0	0	0	15099	638	22	2		2	SPAG7	17	4863265	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	6634	4863265	76331945	1864	154274											
FBXO39	162517	broad.mit.edu	37	chr17	6683885	6683885	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtccctgaacctcaactAcaactgtatctccgacgagc	7	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6683885	T	T	6683885	3	4	191	1	0	0	0	0	1	0	0	0	5804	391	14	5	700	5	FBXO39	17	6683885	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1820620	6683885	74511325	1865	154275											
NLGN2	57555	broad.mit.edu	37	chr17	7317710	7317710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgctgtttctccatggcGgctcctacatggaggggacc	13	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7317710	T	T	7317710	3	4	191	1	0	0	0	0	1	0	0	0	10557	1116	39	1	566	1	NLGN2	17	7317710	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	633825	7317710	73877500	1866	154276											
C17orf74	201243	broad.mit.edu	37	chr17	7329271	7329271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggggtggtggtgctgggCgcggagggcctggccttcac	21	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7329271	A	A	7329271	1	1	191	0	1	0	0	0	0	0	0	0	1896	783	27	3		3	C17orf74	17	7329271	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	11561	7329271	73865939	1867	154277											
POLR2A	5430	broad.mit.edu	37	chr17	7406782	7406782	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaacccacgccttccctccGacctgcaccccatcaaagtg	5	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7406782	A	A	7406782	3	1	191	1	0	0	0	0	1	0	0	0	12309	1058	37	4	3077	4	POLR2A	17	7406782	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	77511	7406782	73788428	1868	154278											
SENP3	26168	broad.mit.edu	37	chr17	7473579	7473579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgttctttcacttggTtcccttacctgtgtctctgt	6	12	5	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7473579	A	A	7473579	1	1	191	0	1	0	0	0	0	0	0	0	14161	1740	60	5		5	SENP3	17	7473579	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	66797	7473579	73721631	1869	154279											
CHD3	1107	broad.mit.edu	37	chr17	7814693	7814693	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacgggaagtggcaggaggTgacctagaagtgagaattca	15	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7814693	G	G	7814693	1	3	191	0	1	0	0	0	0	0	0	0	3357	1711	59	5		5	CHD3	17	7814693	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	341114	7814693	73380517	1870	154280											
CNTROB	116840	broad.mit.edu	37	chr17	7838353	7838353	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctagctcagcccaagccCtggaggagctgtttccccgc	10	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7838353	T	T	7838353	2	4	191	1	0	0	0	0	0	0	0	1	3683	680	24	4		4	CNTROB	17	7838353	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	23660	7838353	73356857	1871	154281											
CCDC42	146849	broad.mit.edu	37	chr17	8647024	8647024	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcccagcgcaggttcaGggtttccattctgcgctgaa	10	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8647024	A	A	8647024	2	1	191	1	0	0	0	0	0	0	0	1	2841	991	35	4		4	CCDC42	17	8647024	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	808671	8647024	72548186	1872	154282											
SPDYE4	388333	broad.mit.edu	37	chr17	8656562	8656562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagggattccccaggaagCcccctctctgccctcctcca	8	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8656562	A	A	8656562	1	1	191	0	1	0	0	0	0	0	0	0	15149	754	26	3		3	SPDYE4	17	8656562	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	9538	8656562	72538648	1873	154283											
GAS7	8522	broad.mit.edu	37	chr17	9923093	9923093	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccccgagcgggactcaCcattggtggtcgtgttgaca	12	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9923093	A	A	9923093	5	1	191	1	0	0	0	0	0	0	1	0	6312	521	18	3	1228	3	GAS7	17	9923093	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	1266531	9923093	71272117	1874	154284											
MYH2	4620	broad.mit.edu	37	chr17	10435163	10435163	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggccagtgcttgacattCatgaaggatctgatattgta	11	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10435163	A	A	10435163	3	1	191	1	0	0	0	0	1	0	0	0	10129	826	29	3	3417	3	MYH2	17	10435163	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	512070	10435163	70760047	1875	154285											
DNAH9	1770	broad.mit.edu	37	chr17	11795289	11795289	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtggattgaagaagtttcCagaaaacaggttatttttag	10	3	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11795289	T	T	11795289	1	4	191	0	1	0	0	0	0	0	0	0	4648	609	21	4		4	DNAH9	17	11795289	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1360126	11795289	69399921	1876	154286											
HS3ST3A1	9955	broad.mit.edu	37	chr17	13399541	13399541	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagccaaagtcgtgcccGgtcatctggtagaacttgag	11	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13399541	T	T	13399541	2	4	191	1	0	0	0	0	0	0	0	1	7432	1103	39	1		1	HS3ST3A1	17	13399541	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1604252	13399541	67795669	1877	154287											
NCOR1	9611	broad.mit.edu	37	chr17	15968780	15968780	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taataaattctacgaaatctGaaatgcaaagacacacacct	4	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15968780	C	C	15968780	1	2	191	0	1	0	0	0	0	0	0	0	10330	1305	45	4		4	NCOR1	17	15968780	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2569239	15968780	65226430	1878	154288											
MAP2K3	5606	broad.mit.edu	37	chr17	21201672	21201672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggctcatgggagtgcagGggacattgatgtcaagggat	17	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21201672	T	T	21201672	1	4	191	0	1	0	0	0	0	0	0	0	9330	1247	43	2		2	MAP2K3	17	21201672	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	5232892	21201672	59993538	1879	154289											
MAP2K3	5606	broad.mit.edu	37	chr17	21206478	21206478	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtcctgtctcttccctcctCcccaccccaccgccagatcg	5	22	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21206478	A	A	21206478	1	1	191	0	1	0	0	0	0	0	0	0	9330	870	30	3		3	MAP2K3	17	21206478	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	4806	21206478	59988732	1880	154290											
NOS2	4843	broad.mit.edu	37	chr17	26092683	26092683	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccccaaggtgctcccccGgcaggtagttcaggccttgg	12	14	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26092683	T	T	26092683	3	4	191	1	0	0	0	0	1	0	0	0	10638	1116	39	1	1187	1	NOS2	17	26092683	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4886205	26092683	55102527	1881	154291											
NOS2	4843	broad.mit.edu	37	chr17	26108314	26108314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctctgcagcccctgatcCcaagctgactgagccagcct	9	17	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26108314	A	A	26108314	1	1	191	0	1	0	0	0	0	0	0	0	10638	638	22	2		2	NOS2	17	26108314	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	15631	26108314	55086896	1882	154292											
SLC13A2	9058	broad.mit.edu	37	chr17	26821353	26821353	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagggagcccgcaaatggaGaggggaaaggcctgtttgtt	16	7	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26821353	T	T	26821353	1	4	191	0	1	0	0	0	0	0	0	0	14505	957	33	3		3	SLC13A2	17	26821353	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	713039	26821353	54373857	1883	154293											
ALDOC	230	broad.mit.edu	37	chr17	26902193	26902193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggttcggacgaagggaacaCcattatcatctttctggtag	11	8	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26902193	A	A	26902193	3	1	191	1	0	0	0	0	1	0	0	0	509	507	18	3	850	3	ALDOC	17	26902193	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	80840	26902193	54293017	1884	154294											
SPAG5	10615	broad.mit.edu	37	chr17	26912271	26912271	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggtcagtagagcacacttGaggcaaagctcacaacagga	11	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26912271	C	C	26912271	1	2	191	0	1	0	0	0	0	0	0	0	15097	1305	45	4		4	SPAG5	17	26912271	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	10078	26912271	54282939	1885	154295											
SGK494	124923	broad.mit.edu	37	chr17	26938634	26938634	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggcttgagctccctggggCacgtggcgggacagaccaaa	15	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26938634	A	A	26938634	2	1	191	1	0	0	0	0	0	0	0	1	14326	697	25	3		3	SGK494	17	26938634	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	26363	26938634	54256576	1886	154296											
KIAA0100	9703	broad.mit.edu	37	chr17	26951226	26951226	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatgatctagcctgatgttGaggtaacttgtaaagagaag	11	5	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26951226	C	C	26951226	1	2	191	0	1	0	0	0	0	0	0	0	8224	1305	45	4		4	KIAA0100	17	26951226	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	12592	26951226	54243984	1887	154297											
SUPT6H	6830	broad.mit.edu	37	chr17	27010460	27010460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagcagagccctgggctGgcgactctctggggaaggcc	17	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27010460	T	T	27010460	1	4	191	0	1	0	0	0	0	0	0	0	15518	1363	47	2		2	SUPT6H	17	27010460	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	59234	27010460	54184750	1888	154298											
SUPT6H	6830	broad.mit.edu	37	chr17	27023851	27023851	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtctgtactgcttttctGcccttttcagcatacatcaa	5	13	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27023851	T	T	27023851	1	4	191	0	1	0	0	0	0	0	0	0	15518	1334	46	3		3	SUPT6H	17	27023851	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	13391	27023851	54171359	1889	154299											
SUPT6H	6830	broad.mit.edu	37	chr17	27025109	27025109	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggcaggctagaaggcaggGagaggcccggagcagtgccc	18	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27025109	T	T	27025109	1	4	191	0	1	0	0	0	0	0	0	0	15518	1189	41	3		3	SUPT6H	17	27025109	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1258	27025109	54170101	1890	154300											
FLOT2	2319	broad.mit.edu	37	chr17	27208024	27208024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgagccatggtaagagacgCcctgtgggccagggatggct	16	10	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27208024	A	A	27208024	1	1	191	0	1	0	0	0	0	0	0	0	5995	754	26	3		3	FLOT2	17	27208024	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	182915	27208024	53987186	1891	154301											
PHF12	57649	broad.mit.edu	37	chr17	27233534	27233534	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctggtgccggcggcgCcctgggaaaaagggggatgg	19	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27233534	A	A	27233534	3	1	191	1	0	0	0	0	1	0	0	0	11918	753	26	3	336	3	PHF12	17	27233534	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	25510	27233534	53961676	1892	154302											
EFCAB5	374786	broad.mit.edu	37	chr17	28320374	28320374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatatgtgaaaggtaggtGgggtaagtggtaaaagggca	18	1	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28320374	T	T	28320374	1	4	191	0	1	0	0	0	0	0	0	0	4978	1363	47	2		2	EFCAB5	17	28320374	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1086840	28320374	52874836	1893	154303											
CPD	1362	broad.mit.edu	37	chr17	28711868	28711868	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttagtctccttataacagAtaacagctgatagagttgtt	8	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28711868	G	G	28711868	1	3	191	0	1	0	0	0	0	0	0	0	3830	348	12	5		5	CPD	17	28711868	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	391494	28711868	52483342	1894	154304											
TBC1D29	26083	broad.mit.edu	37	chr17	28886707	28886707	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaccatcaggagcatgTggtacccacatcacaaccca	7	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28886707	G	G	28886707	1	3	191	0	1	0	0	0	0	0	0	0	15737	1711	59	5		5	TBC1D29	17	28886707	5'UTR	SNP	T	TCGA-64-5781-01A-01D-1625-08	174839	28886707	52308503	1895	154305											
MYO1D	4642	broad.mit.edu	37	chr17	30986161	30986161	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcgtctgcagggcctcctCaaaacggcgaagaactttag	10	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30986161	T	T	30986161	3	4	191	1	0	0	0	0	1	0	0	0	10165	835	29	4	727	4	MYO1D	17	30986161	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2099454	30986161	50209049	1896	154306											
ACCN1	40	broad.mit.edu	37	chr17	31344625	31344625	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaatcccaaatcttacctCataaatataatcaaagagct	5	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31344625	A	A	31344625	4	1	191	1	0	0	0	0	0	1	0	0	128	835	29	3	184	3	ACCN1	17	31344625	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	358464	31344625	49850585	1897	154307											
ACCN1	40	broad.mit.edu	37	chr17	32365683	32365683	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctttctagcctctccagctCtgcctggatctctgcttcct	6	17	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32365683	A	A	32365683	1	1	191	0	1	0	0	0	0	0	0	0	128	928	32	3		3	ACCN1	17	32365683	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1021058	32365683	48829527	1898	154308											
CCL13	6357	broad.mit.edu	37	chr17	32684724	32684724	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcttaggatgagatctaGccagactgtgtgatgcaaat	11	6	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32684724	A	A	32684724	1	1	191	0	1	0	0	0	0	0	0	0	2912	986	34	4		4	CCL13	17	32684724	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	319041	32684724	48510486	1899	154309											
TMEM132E	124842	broad.mit.edu	37	chr17	32954040	32954040	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tctggcccccaactcctcctCgccctccagccccagcgtgg	8	22	1	0	rs150343983	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32954040	G	G	32954040	3	3	191	1	0	0	0	0	1	0	0	0	16171	893	31	4	702	4	TMEM132E	17	32954040	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	269316	32954040	48241170	1900	154310											
TMEM132E	124842	broad.mit.edu	37	chr17	32956090	32956090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatggagaacttcaccaGccagtcagtcaagcggagga	12	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32956090	T	T	32956090	3	4	191	1	0	0	0	0	1	0	0	0	16171	971	34	3	953	3	TMEM132E	17	32956090	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2050	32956090	48239120	1901	154311											
CCT6B	10693	broad.mit.edu	37	chr17	33255014	33255014	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctacacaatagtagtcagaTgtaaagtgtactaaatttca	7	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33255014	A	A	33255014	1	1	191	0	1	0	0	0	0	0	0	0	2988	1479	51	5		5	CCT6B	17	33255014	3'UTR	SNP	T	TCGA-64-5781-01A-01D-1625-08	298924	33255014	47940196	1902	154312											
RAD51L3	5892	broad.mit.edu	37	chr17	33446641	33446641	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcacgcccatgttccccgCaggccggaacagccccaggg	13	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33446641	A	A	33446641	1	1	191	0	1	0	0	0	0	0	0	0	13098	725	25	3		3	RAD51L3	17	33446641	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	191627	33446641	47748569	1903	154313											
TAF15	8148	broad.mit.edu	37	chr17	34171871	34171871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagatcgaggaggctatgGaggagacagaagccgggggg	21	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34171871	T	T	34171871	3	4	191	1	0	0	0	0	1	0	0	0	15637	1174	41	3	1626	3	TAF15	17	34171871	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	725230	34171871	47023339	1904	154314											
CCL4	6351	broad.mit.edu	37	chr17	34432800	34432800	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactcaggactcctctccgCagttcctgtcccttctctta	5	16	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34432800	A	A	34432800	1	1	191	0	1	0	0	0	0	0	0	0	2932	725	25	3		3	CCL4	17	34432800	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	260929	34432800	46762410	1905	154315											
MLLT6	4302	broad.mit.edu	37	chr17	36861986	36861986	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacgcgtgcagcgtggtcgTccaccaaggtacgggggtgg	18	11	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36861986	A	A	36861986	3	1	191	1	0	0	0	0	1	0	0	0	9723	1667	58	5	103	5	MLLT6	17	36861986	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2429186	36861986	44333224	1906	154316											
RPL19	6143	broad.mit.edu	37	chr17	37359396	37359396	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgggcccagtacccatttGctgctttgatggctagttca	10	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37359396	C	C	37359396	1	2	191	0	1	0	0	0	0	0	0	0	13677	1334	46	4		4	RPL19	17	37359396	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	497410	37359396	43835814	1907	154317											
MED1	5469	broad.mit.edu	37	chr17	37575999	37575999	+	Frame_Shift_Del	DEL	C	-	-													gaatagttcttttgacacagCttccaatgagggtgttatag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37575999	-	-	37575999	7	5	191	1	0	1	0	1	0	0	0	0	9518	797	28	0	3493	0	MED1	17	37575999	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	216603	37575999	43619211	1908	154318											
CDK12	51755	broad.mit.edu	37	chr17	37676281	37676281	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaagcggtgcacagctgaAcagaccctacagagcgactt	11	11	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37676281	G	G	37676281	2	3	191	1	0	0	0	0	0	0	0	1	3158	40	2	5		5	CDK12	17	37676281	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	100282	37676281	43518929	1909	154319											
KRT222	125113	broad.mit.edu	37	chr17	38818144	38818145	+	Intron	DNP	GG	TT	TT													atctgaggactcgatgggtcGgttacttttgggatcattct							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38818145	TT	TT	38818144	1	4	191	0	1	0	0	0	0	0	0	0	8530	1131	39	1		1	KRT222	17	38818144	Intron	DNP	GG	TCGA-64-5781-01A-01D-1625-08	1141863	38818144	42377066	1910	154320											
KRT25	147183	broad.mit.edu	37	chr17	38910703	38910703	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacagcattagcattgctGgtggtggatgcgatgatcta	13	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38910703	A	A	38910703	2	1	191	1	0	0	0	0	0	0	0	1	8533	1335	47	4		4	KRT25	17	38910703	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	92559	38910703	42284507	1911	154321											
KRTAP4-4	84616	broad.mit.edu	37	chr17	39316515	39316515	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggggcggcagcaggtGgttctgcagcaggtggtctg	19	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39316515	T	T	39316515	2	4	191	1	0	0	0	0	0	0	0	1	8625	1335	47	2		2	KRTAP4-4	17	39316515	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	405812	39316515	41878695	1912	154322											
KRTAP9-8	83901	broad.mit.edu	37	chr17	39394396	39394396	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacctgcagcagcacaccCtgctgccagccctcctgctg	8	20	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39394396	T	T	39394396	2	4	191	1	0	0	0	0	0	0	0	1	8648	668	24	4		4	KRTAP9-8	17	39394396	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	77881	39394396	41800814	1913	154323											
KRT33B	3884	broad.mit.edu	37	chr17	39521116	39521116	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccagcagcacctgatactCctggttctgccgctccaggt	10	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39521116	A	A	39521116	4	1	191	1	0	0	0	0	0	1	0	0	8541	864	30	3	210	3	KRT33B	17	39521116	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	126720	39521116	41674094	1914	154324											
KRT34	3885	broad.mit.edu	37	chr17	39535402	39535402	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtagtgggcctcgctctcCgtcagcgtgttttccagaga	12	12	2	1	rs148874673	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39535402	T	T	39535402	2	4	191	1	0	0	0	0	0	0	0	1	8542	639	23	4		4	KRT34	17	39535402	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	14286	39535402	41659808	1915	154325											
KRT9	3857	broad.mit.edu	37	chr17	39726652	39726652	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccttcagcgaagatgtttgGtgtggccttcattcattcat	10	9	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39726652	C	C	39726652	1	2	191	0	1	0	0	0	0	0	0	0	8572	1276	44	4		4	KRT9	17	39726652	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	191250	39726652	41468558	1916	154326											
TTC25	83538	broad.mit.edu	37	chr17	40095152	40095152	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagatggtgtctgcaggaaGaggagttaccctgtcagcta	14	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40095152	C	C	40095152	1	2	191	0	1	0	0	0	0	0	0	0	16819	957	33	4		4	TTC25	17	40095152	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	368500	40095152	41100058	1917	154327											
STAT5B	6777	broad.mit.edu	37	chr17	40354326	40354326	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggccaagcccccagttcctCccctgtggacccccacaaga	9	19	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40354326	A	A	40354326	1	1	191	0	1	0	0	0	0	0	0	0	15387	870	30	3		3	STAT5B	17	40354326	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	259174	40354326	40840884	1918	154328											
MLX	6945	broad.mit.edu	37	chr17	40720378	40720378	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgactgagcgagactctgtCtaaaaaaaaaataaataaat	7	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40720378	T	T	40720378	1	4	191	0	1	0	0	0	0	0	0	0	9728	928	32	4		4	MLX	17	40720378	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	366052	40720378	40474832	1919	154329											
VPS25	84313	broad.mit.edu	37	chr17	40925712	40925712	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggcaagtgctgcctccCgccctctaattctgcgcccc	9	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40925712	T	T	40925712	1	4	191	0	1	0	0	0	0	0	0	0	17323	667	23	4		4	VPS25	17	40925712	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	205334	40925712	40269498	1920	154330											
AOC3	8639	broad.mit.edu	37	chr17	41004452	41004452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactagtttatgagataagCctccaagaggccttggccat	10	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41004452	A	A	41004452	3	1	191	1	0	0	0	0	1	0	0	0	730	738	26	3	1094	3	AOC3	17	41004452	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	78740	41004452	40190758	1921	154331											
BRCA1	672	broad.mit.edu	37	chr17	41276130	41276130	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatttctttctgttccaatGaactttaacacattagaaaa	3	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41276130	A	A	41276130	1	1	191	0	1	0	0	0	0	0	0	0	1507	1305	45	4		4	BRCA1	17	41276130	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	271678	41276130	39919080	1922	154332											
NBR1	4077	broad.mit.edu	37	chr17	41352478	41352478	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctggggttgaggctgggcAggaaccagctgaggctgggg	21	8	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41352478	T	T	41352478	3	4	191	1	0	0	0	0	1	0	0	0	10295	188	7	5	2383	5	NBR1	17	41352478	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	76348	41352478	39842732	1923	154333											
DHX8	1659	broad.mit.edu	37	chr17	41599346	41599346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accccaagatggatgtgttgGgcactgtcattgtgaaaata	11	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41599346	T	T	41599346	1	4	191	0	1	0	0	0	0	0	0	0	4555	1247	43	2		2	DHX8	17	41599346	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	246868	41599346	39595864	1924	154334											
MPP3	4356	broad.mit.edu	37	chr17	41888475	41888475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaactggcccatcaagcaaCgtacttgttgtgatgtaagt	9	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41888475	A	A	41888475	1	1	191	0	1	0	0	0	0	0	0	0	9829	551	19	3		3	MPP3	17	41888475	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	289129	41888475	39306735	1925	154335											
CD300LG	146894	broad.mit.edu	37	chr17	41931464	41931464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatcactaaaccataagGtgcctttgagaaaataggaa	8	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41931464	T	T	41931464	1	4	191	0	1	0	0	0	0	0	0	0	3032	1276	44	3		3	CD300LG	17	41931464	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	42989	41931464	39263746	1926	154336											
SLC4A1	6521	broad.mit.edu	37	chr17	42340169	42340169	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagataggagtctaggaccaGgtccccagagcctccaggtg	13	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42340169	A	A	42340169	1	1	191	0	1	0	0	0	0	0	0	0	14764	1015	35	4		4	SLC4A1	17	42340169	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	408705	42340169	38855041	1927	154337											
GPATCH8	23131	broad.mit.edu	37	chr17	42501871	42501871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacataatccttcaagaccCatgaaatacaaagaaacaaa	3	10	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42501871	A	A	42501871	1	1	191	0	1	0	0	0	0	0	0	0	6659	609	21	2		2	GPATCH8	17	42501871	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	161702	42501871	38693339	1928	154338											
DBF4B	80174	broad.mit.edu	37	chr17	42815923	42815923	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctgcaccttcatcttcctGagaagccactttctcccatt	4	17	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42815923	C	C	42815923	1	2	191	0	1	0	0	0	0	0	0	0	4282	1305	45	4		4	DBF4B	17	42815923	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	314052	42815923	38379287	1929	154339											
ADAM11	4185	broad.mit.edu	37	chr17	42847081	42847081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccctctgccctccccccaCccagcctgtccatctggccc	5	26	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42847081	A	A	42847081	1	1	191	0	1	0	0	0	0	0	0	0	235	522	18	3		3	ADAM11	17	42847081	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	31158	42847081	38348129	1930	154340											
GFAP	2670	broad.mit.edu	37	chr17	42992785	42992785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcggccaggagccaggcCccccaccatcatctcccctg	10	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42992785	A	A	42992785	3	1	191	1	0	0	0	0	1	0	0	0	6401	623	22	2	1393	2	GFAP	17	42992785	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	145704	42992785	38202425	1931	154341											
FMNL1	752	broad.mit.edu	37	chr17	43313572	43313572	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagaaggacgacgtccaCgtctgtattatgtgcctacg	11	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43313572	T	T	43313572	2	4	191	1	0	0	0	0	0	0	0	1	6009	535	19	4		4	FMNL1	17	43313572	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	320787	43313572	37881638	1932	154342											
C17orf46	124783	broad.mit.edu	37	chr17	43332457	43332457	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctagcacagcccctctatggGagctgcggggctggcctcac	13	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43332457	A	A	43332457	1	1	191	0	1	0	0	0	0	0	0	0	1873	1189	41	4		4	C17orf46	17	43332457	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	18885	43332457	37862753	1933	154343											
C17orf46	124783	broad.mit.edu	37	chr17	43333141	43333141	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacacgtggttctcctccgtGaaactccggcagtttgaatt	10	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43333141	A	A	43333141	2	1	191	1	0	0	0	0	0	0	0	1	1873	1281	45	4		4	C17orf46	17	43333141	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	684	43333141	37862069	1934	154344											
KIAA1267	284058	broad.mit.edu	37	chr17	44110791	44110791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcattctcctcatcaggaCtccccttcagagactgaaga	6	14	5	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44110791	A	A	44110791	3	1	191	1	0	0	0	0	1	0	0	0	8289	565	20	3	631	3	KIAA1267	17	44110791	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	777650	44110791	37084419	1935	154345											
KIAA1267	284058	broad.mit.edu	37	chr17	44172088	44172088	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaaggaaataaactgagTgaaatccaagagtagcagta	9	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44172088	A	A	44172088	1	1	191	0	1	0	0	0	0	0	0	0	8289	1711	59	5		5	KIAA1267	17	44172088	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	61297	44172088	37023122	1936	154346											
HOXB1	3211	broad.mit.edu	37	chr17	46607968	46607968	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccttctgattgacccagaGggtagtactgagaaggcccg	12	11	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46607968	T	T	46607968	3	4	191	1	0	0	0	0	1	0	0	0	7366	1000	35	2	614	2	HOXB1	17	46607968	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2435880	46607968	34587242	1937	154347											
ABI3	51225	broad.mit.edu	37	chr17	47299960	47299960	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggacaatgagctctcCttctctgagggcactgtcat	10	11	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47299960	A	A	47299960	2	1	191	1	0	0	0	0	0	0	0	1	90	668	24	2		2	ABI3	17	47299960	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	691992	47299960	33895250	1938	154348											
ZNF652	22834	broad.mit.edu	37	chr17	47376118	47376118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcacggggctggtcaccCgaaagcacttctccttgtgg	11	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47376118	A	A	47376118	3	1	191	1	0	0	0	0	1	0	0	0	18192	652	23	1	346	1	ZNF652	17	47376118	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	76158	47376118	33819092	1939	154349											
NXPH3	11248	broad.mit.edu	37	chr17	47656602	47656602	+	Frame_Shift_Del	DEL	C	-	-													agcacggactatcggctggtCcagaaggtgtgcccagatta							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47656602	-	-	47656602	7	5	191	1	0	1	0	1	0	0	0	0	10887	842	30	0	705	0	NXPH3	17	47656602	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	280484	47656602	33538608	1940	154350											
SLC35B1	10237	broad.mit.edu	37	chr17	47781515	47781515	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgttcagcatcatgtggttgGagcctgtttggtaatgagcc	13	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47781515	A	A	47781515	3	1	191	1	0	0	0	0	1	0	0	0	14689	1174	41	4	382	4	SLC35B1	17	47781515	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	124913	47781515	33413695	1941	154351											
CA10	56934	broad.mit.edu	37	chr17	50008472	50008472	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagattccaagctgagttcaCcaatccccagaaagaaggaa	8	10	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50008472	T	T	50008472	3	4	191	1	0	0	0	0	1	0	0	0	2537	507	18	4	857	4	CA10	17	50008472	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2226957	50008472	31186738	1942	154352											
KIF2B	84643	broad.mit.edu	37	chr17	51900641	51900641	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactcctgctgaatccagctCtggactctgctgaacacccc	7	16	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51900641	A	A	51900641	3	1	191	1	0	0	0	0	1	0	0	0	8368	912	32	3	249	3	KIF2B	17	51900641	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1892169	51900641	29294569	1943	154353											
KIF2B	84643	broad.mit.edu	37	chr17	51900752	51900752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaatgggttgcgatgatcCcccagaaaaaccaaacagcc	9	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51900752	A	A	51900752	3	1	191	1	0	0	0	0	1	0	0	0	8368	623	22	2	360	2	KIF2B	17	51900752	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	111	51900752	29294458	1944	154354											
KIF2B	84643	broad.mit.edu	37	chr17	51902345	51902345	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttggagcagaaaattgatGctctgaccgagatccaaaag	10	7	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51902345	T	T	51902345	3	4	191	1	0	0	0	0	1	0	0	0	8368	1319	46	3	1953	3	KIF2B	17	51902345	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1593	51902345	29292865	1945	154355											
ANKFN1	162282	broad.mit.edu	37	chr17	54517785	54517785	+	Frame_Shift_Del	DEL	G	-	-													acaatcacaggacttacaatGgtaaatgtccccagtagact							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54517785	-	-	54517785	7	5	191	1	0	1	0	1	0	0	0	0	625	1362	47	0	1047	0	ANKFN1	17	54517785	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	2615440	54517785	26677425	1946	154356											
CUEDC1	404093	broad.mit.edu	37	chr17	55962528	55962528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattacccgggccgtgccCctacctccggggggatgctg	15	14	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55962528	A	A	55962528	1	1	191	0	1	0	0	0	0	0	0	0	4085	638	22	2		2	CUEDC1	17	55962528	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1444743	55962528	25232682	1947	154357											
EPX	8288	broad.mit.edu	37	chr17	56271329	56271329	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacccatggctgcaggaggaGacccttgctaggggcctcca	13	14	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56271329	T	T	56271329	3	4	191	1	0	0	0	0	1	0	0	0	5242	942	33	3	488	3	EPX	17	56271329	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	308801	56271329	24923881	1948	154358											
EPX	8288	broad.mit.edu	37	chr17	56276772	56276773	+	Intron	DNP	CC	AT	AT													gggctttgtatctccacccaCcaatagtaaattaatgttgt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	56276773	AT	AT	56276772	1	1	191	0	1	0	0	0	0	0	0	0	5242	522	18	3		3	EPX	17	56276772	Intron	DNP	CC	TCGA-64-5781-01A-01D-1625-08	5443	56276772	24918438	1949	154359											
TBX4	9496	broad.mit.edu	37	chr17	59556082	59556082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaaaacactgctttctGcacccacgtgttcccagaga	6	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59556082	T	T	59556082	3	4	191	1	0	0	0	0	1	0	0	0	15782	1319	46	3	662	3	TBX4	17	59556082	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3279310	59556082	21639128	1950	154360											
MED13	9969	broad.mit.edu	37	chr17	60023740	60023740	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagaccccatcacaaatgacCttcactgagaagataattgt	6	10	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60023740	G	G	60023740	1	3	191	0	1	0	0	0	0	0	0	0	9523	696	24	4		4	MED13	17	60023740	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	467658	60023740	21171470	1951	154361											
MARCH10	162333	broad.mit.edu	37	chr17	60814126	60814126	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacaacctttgcccagcaGaaggccgctctgttgctggc	13	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60814126	T	T	60814126	3	4	191	1	0	0	0	0	1	0	0	0	9391	942	33	3	1347	3	MARCH10	17	60814126	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	790386	60814126	20381084	1952	154362											
ACE	1636	broad.mit.edu	37	chr17	61568583	61568583	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcagggctggacgcccaGgaggatgtttaaggaggctg	17	8	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61568583	A	A	61568583	3	1	191	1	0	0	0	0	1	0	0	0	136	1000	35	4	3030	4	ACE	17	61568583	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	754457	61568583	19626627	1953	154363											
ACE	1636	broad.mit.edu	37	chr17	61571364	61571364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctcgtcgatcagtggcGctggagggtatttgatggaa	14	8	1	1	rs141139841		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61571364	T	T	61571364	3	4	191	1	0	0	0	0	1	0	0	0	136	1087	38	3	3503	3	ACE	17	61571364	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2781	61571364	19623846	1954	154364											
CCDC47	57003	broad.mit.edu	37	chr17	61829894	61829894	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagagactcatttctctaaGtttgttaggcagttaaaatg	8	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61829894	A	A	61829894	1	1	191	0	1	0	0	0	0	0	0	0	2846	1044	36	4		4	CCDC47	17	61829894	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	258530	61829894	19365316	1955	154365											
GH1	2688	broad.mit.edu	37	chr17	61995231	61995231	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactcctgaggaactgcacGggctccagccacgactggat	11	14	0	1	rs144610881		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61995231	T	T	61995231	2	4	191	1	0	0	0	0	0	0	0	1	6431	1103	39	1		1	GH1	17	61995231	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	165337	61995231	19199979	1956	154366											
SCN4A	6329	broad.mit.edu	37	chr17	62022892	62022892	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtagtagaacttgccgGcaaacaggttgacacccatg	11	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62022892	A	A	62022892	3	1	191	1	0	0	0	0	1	0	0	0	14033	1203	42	4	1986	4	SCN4A	17	62022892	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	27661	62022892	19172318	1957	154367											
PSMD12	5718	broad.mit.edu	37	chr17	65340938	65340938	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattccaaatctgtaaaaaTtaagtattaactaatataat	2	4	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65340938	A	A	65340938	1	1	191	0	1	0	0	0	0	0	0	0	12801	1508	52	5		5	PSMD12	17	65340938	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	3318046	65340938	15854272	1958	154368											
C17orf58	284018	broad.mit.edu	37	chr17	65989093	65989093	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgacctacagcccgggctGtggcacccacgttacaaacg	12	15	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65989093	T	T	65989093	1	4	191	0	1	0	0	0	0	0	0	0	1882	1377	48	3		3	C17orf58	17	65989093	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	648155	65989093	15206117	1959	154369											
ABCA6	23460	broad.mit.edu	37	chr17	67109547	67109547	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgtctctctttcacattaActgtatccagaagatagcat	5	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67109547	T	T	67109547	1	4	191	0	1	0	0	0	0	0	0	0	36	58	2	5		5	ABCA6	17	67109547	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	1120454	67109547	14085663	1960	154370											
ABCA10	10349	broad.mit.edu	37	chr17	67149676	67149676	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgttcctggagcttaagaGcttccaccaatctgacaaaa	8	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67149676	A	A	67149676	3	1	191	1	0	0	0	0	1	0	0	0	29	971	34	4	682	4	ABCA10	17	67149676	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	40129	67149676	14045534	1961	154371											
ABCA5	23461	broad.mit.edu	37	chr17	67309322	67309322	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaattagattagaaagaGtaaacttgtccataggattg	9	4	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67309322	A	A	67309322	3	1	191	1	0	0	0	0	1	0	0	0	35	1029	36	4	4858	4	ABCA5	17	67309322	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	159646	67309322	13885888	1962	154372											
TTYH2	94015	broad.mit.edu	37	chr17	72218555	72218555	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggcactcagggcccaaGggcagggcacttccagagcc	16	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72218555	T	T	72218555	1	4	191	0	1	0	0	0	0	0	0	0	16866	1015	35	2		2	TTYH2	17	72218555	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4909233	72218555	8976655	1963	154373											
TTYH2	94015	broad.mit.edu	37	chr17	72249262	72249263	+	Frame_Shift_Ins	INS	-	AA	AA													atgatgatgacccctttaacINSccccaagcctggcgcatggc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	72249263	AA	AA	72249262	7	5	191	1	0	1	1	0	0	0	0	0	16866	506	18	0	1348	0	TTYH2	17	72249262	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	30707	72249262	8945948	1964	154374											
DNAI2	64446	broad.mit.edu	37	chr17	72287239	72287239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccccaaagattcccacGtactcctgggtggctgctac	8	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72287239	T	T	72287239	3	4	191	1	0	0	0	0	1	0	0	0	4650	1145	40	3	709	3	DNAI2	17	72287239	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	37977	72287239	8907971	1965	154375											
RAB37	326624	broad.mit.edu	37	chr17	72741407	72741407	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctcctcaccccagccCagcccagcccagcccagccc	6	25	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72741407	T	T	72741407	1	4	191	0	1	0	0	0	0	0	0	0	13035	609	21	4		4	RAB37	17	72741407	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	454168	72741407	8453803	1966	154376											
EVPL	2125	broad.mit.edu	37	chr17	74010647	74010647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagggcggcatcctgcaCcaccttctccctgcaggagg	14	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74010647	A	A	74010647	3	1	191	1	0	0	0	0	1	0	0	0	5334	507	18	3	3888	3	EVPL	17	74010647	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1269240	74010647	7184563	1967	154377											
QRICH2	84074	broad.mit.edu	37	chr17	74286987	74286987	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgacatgctgttttcaggGactcagggagatgtgtagca	13	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74286987	A	A	74286987	1	1	191	0	1	0	0	0	0	0	0	0	12988	1189	41	4		4	QRICH2	17	74286987	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	276340	74286987	6908223	1968	154378											
DNAH17	8632	broad.mit.edu	37	chr17	76435278	76435278	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatggagttttccattgtctAtggtaaaccctagttttttt	7	6	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76435278	G	G	76435278	3	3	191	1	0	0	0	0	1	0	0	0	4641	449	16	5	1725	5	DNAH17	17	76435278	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2148291	76435278	4759932	1969	154379											
RNF213	57674	broad.mit.edu	37	chr17	78325513	78325513	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttataaatgaaatcaacaaaAtacgagaaaatgaggaccgt	7	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78325513	T	T	78325513	3	4	191	1	0	0	0	0	1	0	0	0	13588	101	4	5	10654	5	RNF213	17	78325513	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1890235	78325513	2869697	1970	154380											
RPTOR	57521	broad.mit.edu	37	chr17	78516009	78516009	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccttggcatcatggccGccctcagaccccctgtgaag	9	17	2	2	rs142324009	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78516009	T	T	78516009	1	4	191	0	1	0	0	0	0	0	0	0	13776	1102	38	3		3	RPTOR	17	78516009	5'Flank	SNP	G	TCGA-64-5781-01A-01D-1625-08	190496	78516009	2679201	1971	154381											
ACTG1	71	broad.mit.edu	37	chr17	79479283	79479283	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtctggggcgcccgacgatgGaaggaaacacggctcgggga	18	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79479283	A	A	79479283	3	1	191	1	0	0	0	0	1	0	0	0	196	1174	41	4	1049	4	ACTG1	17	79479283	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	963274	79479283	1715927	1972	154382											
CSNK1D	1453	broad.mit.edu	37	chr17	80211142	80211142	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgagcagagcaagggcgcGagatggcaccccagggcagt	17	10	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80211142	T	T	80211142	1	4	191	0	1	0	0	0	0	0	0	0	3986	1073	37	3		3	CSNK1D	17	80211142	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	731859	80211142	984068	1973	154383											
ADCYAP1	116	broad.mit.edu	37	chr18	909687	909687	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccctgacgcaatgaaaagtCgttttccaaactgactcaac	7	12	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	909687	T	T	909687	1	4	191	0	1	0	0	0	0	0	0	0	302	899	31	4		4	ADCYAP1	18	909687	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08		909687	77167561	1974	154384											
EMILIN2	84034	broad.mit.edu	37	chr18	2885191	2885191	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctttaatatttccggtgctCcttcaaacaacaggatttgt	6	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2885191	G	G	2885191	1	3	191	0	1	0	0	0	0	0	0	0	5136	870	30	4		4	EMILIN2	18	2885191	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1975504	2885191	75192057	1975	154385											
LPIN2	9663	broad.mit.edu	37	chr18	2934504	2934504	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattcttcatttacagctctGcaaaacacacgcacgtttgc	5	12	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2934504	A	A	2934504	1	1	191	0	1	0	0	0	0	0	0	0	9006	1334	46	4		4	LPIN2	18	2934504	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	49313	2934504	75142744	1976	154386											
EPB41L3	23136	broad.mit.edu	37	chr18	5396036	5396036	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcatctgctgctccctgatCactaataaaatgaccattat	5	11	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5396036	A	A	5396036	1	1	191	0	1	0	0	0	0	0	0	0	5196	841	29	3		3	EPB41L3	18	5396036	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2461532	5396036	72681212	1977	154387											
LAMA1	284217	broad.mit.edu	37	chr18	7015759	7015759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcgtagccccagtgcccatCctcacattcttcacacttca	4	17	4	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7015759	A	A	7015759	3	1	191	1	0	0	0	0	1	0	0	0	8677	855	30	3	6307	3	LAMA1	18	7015759	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1619723	7015759	71061489	1978	154388											
LAMA1	284217	broad.mit.edu	37	chr18	7043261	7043261	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatccatcaatacaggtttCacagttgattcccatggtgt	7	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7043261	T	T	7043261	3	4	191	1	0	0	0	0	1	0	0	0	8677	835	29	4	8331	4	LAMA1	18	7043261	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	27502	7043261	71033987	1979	154389											
PPP4R1	9989	broad.mit.edu	37	chr18	9562080	9562080	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggagtccatattctgttaGgaaaaaataactacttaaag	8	5	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9562080	A	A	9562080	1	1	191	0	1	0	0	0	0	0	0	0	12504	1015	35	4		4	PPP4R1	18	9562080	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2518819	9562080	68515168	1980	154390											
ROCK1	6093	broad.mit.edu	37	chr18	18534823	18534823	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcatcttcgacactctagGgcagggggtggcttaaaaac	13	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18534823	C	C	18534823	2	2	191	1	0	0	0	0	0	0	0	1	13628	1219	43	4		4	ROCK1	18	18534823	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	8972743	18534823	59542425	1981	154391											
MIB1	57534	broad.mit.edu	37	chr18	19378025	19378025	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttagacttggaaacatgAatctatttttttccccaaga	5	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19378025	T	T	19378025	1	4	191	0	1	0	0	0	0	0	0	0	9659	261	9	5		5	MIB1	18	19378025	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	843202	19378025	58699223	1982	154392											
GATA6	2627	broad.mit.edu	37	chr18	19762931	19762931	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taattccattcccatgactcCaacttccacctcttctaact	1	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19762931	T	T	19762931	3	4	191	1	0	0	0	0	1	0	0	0	6320	594	21	4	1565	4	GATA6	18	19762931	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	384906	19762931	58314317	1983	154393											
RIOK3	8780	broad.mit.edu	37	chr18	21047356	21047356	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcacttacagtgctttatctCttgcaggaaaaagcagttga	8	8	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21047356	T	T	21047356	1	4	191	0	1	0	0	0	0	0	0	0	13490	928	32	4		4	RIOK3	18	21047356	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1284425	21047356	57029892	1984	154394											
LAMA3	3909	broad.mit.edu	37	chr18	21338419	21338419	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgatcgctgctgcacagGgtacaatcagaggcgctggc	15	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21338419	C	C	21338419	3	2	191	1	0	0	0	0	1	0	0	0	8679	1232	43	4	1033	4	LAMA3	18	21338419	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	291063	21338419	56738829	1985	154395											
PSMA8	143471	broad.mit.edu	37	chr18	23751177	23751177	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcattcctgagcggtggcCagggcaggtccccgttcttg	13	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23751177	A	A	23751177	1	1	191	0	1	0	0	0	0	0	0	0	12779	609	21	2		2	PSMA8	18	23751177	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2412758	23751177	54326071	1986	154396											
CDH2	1000	broad.mit.edu	37	chr18	25543321	25543321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgagtgtctctctgtacCtcattaatgaagtccccaat	6	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25543321	A	A	25543321	3	1	191	1	0	0	0	0	1	0	0	0	3135	695	24	2	214	2	CDH2	18	25543321	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1792144	25543321	52533927	1987	154397											
CDH2	1000	broad.mit.edu	37	chr18	25570121	25570121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgttgtcaacatggtaCcggcatgaagcccttcttct	9	10	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25570121	A	A	25570121	3	1	191	1	0	0	0	0	1	0	0	0	3135	507	18	3	1210	3	CDH2	18	25570121	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	26800	25570121	52507127	1988	154398											
CDH2	1000	broad.mit.edu	37	chr18	25572768	25572768	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagttagattagctactaTgatgtctaccctgttctcag	7	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25572768	A	A	25572768	3	1	191	1	0	0	0	0	1	0	0	0	3135	1464	51	5	1557	5	CDH2	18	25572768	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2647	25572768	52504480	1989	154399											
CDH2	1000	broad.mit.edu	37	chr18	25589629	25589629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggcaatggtaaactctgCagacatttagaactgttaat	9	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25589629	A	A	25589629	1	1	191	0	1	0	0	0	0	0	0	0	3135	725	25	3		3	CDH2	18	25589629	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	16861	25589629	52487619	1990	154400											
CDH2	1000	broad.mit.edu	37	chr18	25616533	25616534	+	Intron	DNP	CA	AT	AT													gccatcaagtttccatttccCataattccttctgcttagtg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	25616534	AT	AT	25616533	1	1	191	0	1	0	0	0	0	0	0	0	3135	609	21	2		2	CDH2	18	25616533	Intron	DNP	CA	TCGA-64-5781-01A-01D-1625-08	26904	25616533	52460715	1991	154401											
DSG2	1829	broad.mit.edu	37	chr18	29122774	29122774	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggagctcaggcagctgctGttgcactgaacgaagaattc	12	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29122774	C	C	29122774	3	2	191	1	0	0	0	0	1	0	0	0	4817	1377	48	4	2347	4	DSG2	18	29122774	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3506241	29122774	48954474	1992	154402											
RNF138	51444	broad.mit.edu	37	chr18	29706687	29706687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtgtgtctcttccttgggGagatcctagccagattacca	10	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29706687	T	T	29706687	3	4	191	1	0	0	0	0	1	0	0	0	13552	1174	41	3	615	3	RNF138	18	29706687	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	583913	29706687	48370561	1993	154403											
FHOD3	80206	broad.mit.edu	37	chr18	34081905	34081905	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatttcagaaaaactataCaactccagcggacgagattt	6	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34081905	A	A	34081905	4	1	191	1	0	0	0	0	0	1	0	0	5940	489	17	3	362	3	FHOD3	18	34081905	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	4375218	34081905	43995343	1994	154404											
KIAA1328	57536	broad.mit.edu	37	chr18	34740366	34740366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtttaacaactgtagtgGcaaaatgagaaactggtagg	11	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34740366	T	T	34740366	1	4	191	0	1	0	0	0	0	0	0	0	8295	1218	42	3		3	KIAA1328	18	34740366	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	658461	34740366	43336882	1995	154405											
KIAA1328	57536	broad.mit.edu	37	chr18	34753036	34753036	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatcattacagcacacCacctcccggtaagcttcaga	5	16	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34753036	T	T	34753036	2	4	191	1	0	0	0	0	0	0	0	1	8295	581	21	4		4	KIAA1328	18	34753036	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	12670	34753036	43324212	1996	154406											
PIK3C3	5289	broad.mit.edu	37	chr18	39609247	39609247	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagaaatccagatcattAcgcaacatagaactaatttt	4	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39609247	T	T	39609247	1	4	191	0	1	0	0	0	0	0	0	0	12007	406	14	5		5	PIK3C3	18	39609247	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	4856211	39609247	38468001	1997	154407											
KIAA0427	9811	broad.mit.edu	37	chr18	46284530	46284530	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgcaatgccaaagagaccatGaccatcgagaacccaaaact	7	13	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46284530	C	C	46284530	3	2	191	1	0	0	0	0	1	0	0	0	8246	1290	45	4	851	4	KIAA0427	18	46284530	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	6675283	46284530	31792718	1998	154408											
MBD1	4152	broad.mit.edu	37	chr18	47801936	47801936	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcgacgattttaacagCagaatgagctctgctccctc	10	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47801936	T	T	47801936	1	4	191	0	1	0	0	0	0	0	0	0	9434	725	25	4		4	MBD1	18	47801936	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1517406	47801936	30275312	1999	154409											
CDH20	28316	broad.mit.edu	37	chr18	59206437	59206437	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacttctggaaacaattgtTagataaccaaattcaccatc	4	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59206437	G	G	59206437	1	3	191	0	1	0	0	0	0	0	0	0	3136	1769	61	5		5	CDH20	18	59206437	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	11404501	59206437	18870811	2000	154410											
KIAA1468	57614	broad.mit.edu	37	chr18	59931285	59931285	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactattatcggaagtcgtgAgcaattggcagtgctgctgc	12	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59931285	T	T	59931285	3	4	191	1	0	0	0	0	1	0	0	0	8306	304	11	5	2480	5	KIAA1468	18	59931285	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	724848	59931285	18145963	2001	154411											
SERPINB13	5275	broad.mit.edu	37	chr18	61259757	61259757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtggtattctggaatgGccaaatggccctggtaggac	15	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61259757	A	A	61259757	1	1	191	0	1	0	0	0	0	0	0	0	14213	1218	42	4		4	SERPINB13	18	61259757	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1328472	61259757	16817491	2002	154412											
SERPINB4	6318	broad.mit.edu	37	chr18	61323407	61323407	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcaacaaatgtgaaatacAgaaggttcactttattagat	8	5	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61323407	T	T	61323407	1	4	191	0	1	0	0	0	0	0	0	0	14216	203	7	5		5	SERPINB4	18	61323407	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	63650	61323407	16753841	2003	154413											
CDH7	1005	broad.mit.edu	37	chr18	63529815	63529815	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttccctaattaaggcatCaaagtaaatagagtgactta	7	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63529815	A	A	63529815	1	1	191	0	1	0	0	0	0	0	0	0	3145	841	29	3		3	CDH7	18	63529815	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2206408	63529815	14547433	2004	154414											
RTTN	25914	broad.mit.edu	37	chr18	67869201	67869201	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatatcctgttaagattTcagggttttttgacaattct	7	5	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67869201	C	C	67869201	3	2	191	1	0	0	0	0	1	0	0	0	13848	1783	62	5	6448	5	RTTN	18	67869201	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	4339386	67869201	10208047	2005	154415											
NETO1	81832	broad.mit.edu	37	chr18	70461637	70461637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaaggtccttaaagtcagGatcttaaaaattgagaaaaa	7	6	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70461637	T	T	70461637	3	4	191	1	0	0	0	0	1	0	0	0	10434	1174	41	3	1153	3	NETO1	18	70461637	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2592436	70461637	7615611	2006	154416											
CNDP1	84735	broad.mit.edu	37	chr18	72247405	72247405	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgttctccaaaagaaatAgttccaacaagatggttgtt	8	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72247405	G	G	72247405	3	3	191	1	0	0	0	0	1	0	0	0	3625	420	15	5	1245	5	CNDP1	18	72247405	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1785768	72247405	5829843	2007	154417											
C18orf62	284274	broad.mit.edu	37	chr18	73139540	73139540	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggggctgcggcggtgaccAgtgagaggtctccttgatga	18	8	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73139540	T	T	73139540	1	4	191	0	1	0	0	0	0	0	0	0	1925	203	7	5		5	C18orf62	18	73139540	5'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	892135	73139540	4937708	2008	154418											
ZNF236	7776	broad.mit.edu	37	chr18	74592256	74592256	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcatcacagtgggcatcaAccaggacattttacaggtga	11	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74592256	G	G	74592256	3	3	191	1	0	0	0	0	1	0	0	0	17915	43	2	5	1196	5	ZNF236	18	74592256	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	1452716	74592256	3484992	2009	154419											
SALL3	27164	broad.mit.edu	37	chr18	76753771	76753771	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcggcgggccgcccctcActaaagccgagcccgtcagc	11	19	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76753771	T	T	76753771	3	4	191	1	0	0	0	0	1	0	0	0	13923	159	6	5	1786	5	SALL3	18	76753771	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2161515	76753771	1323477	2010	154420											
SALL3	27164	broad.mit.edu	37	chr18	76757010	76757010	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttctctgaaatgttccaGaaggacctggcagctcgggc	12	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76757010	T	T	76757010	3	4	191	1	0	0	0	0	1	0	0	0	13923	933	33	3	3601	3	SALL3	18	76757010	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3239	76757010	1320238	2011	154421											
BSG	682	broad.mit.edu	37	chr19	580362	580362	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggtacgcggctcacctGcctgctgtggttgcagggtg	16	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	580362	A	A	580362	1	1	191	0	1	0	0	0	0	0	0	0	1538	1334	46	4		4	BSG	19	580362	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08		580362	58548621	2012	154422											
PTBP1	5725	broad.mit.edu	37	chr19	805468	805468	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggaggttgtgggtgcgatGattagtgtctcatttatttc	14	4	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	805468	A	A	805468	1	1	191	0	1	0	0	0	0	0	0	0	12831	1305	45	4		4	PTBP1	19	805468	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	225106	805468	58323515	2013	154423											
ELANE	1991	broad.mit.edu	37	chr19	852295	852296	+	5'UTR	DNP	GG	TT	TT													aagaggagccgggcgggcacGgaggggcagagaccccggag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	852296	TT	TT	852295	1	4	191	0	1	0	0	0	0	0	0	0	5090	1131	39	1		1	ELANE	19	852295	5'UTR	DNP	GG	TCGA-64-5781-01A-01D-1625-08	46827	852295	58276688	2014	154424											
DOT1L	84444	broad.mit.edu	37	chr19	2222371	2222371	+	Frame_Shift_Del	DEL	C	-	-													cagcaagcacagccccctgaCcgccagcgcccgtggggact							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2222371	-	-	2222371	7	5	191	1	0	1	0	1	0	0	0	0	4749	507	18	0	3297	0	DOT1L	19	2222371	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	1370076	2222371	56906612	2015	154425											
S1PR4	8698	broad.mit.edu	37	chr19	3179494	3179494	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggtgcaggccagcgggcAgaaggccccacgcccagcgg	16	16	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3179494	G	G	3179494	3	3	191	1	0	0	0	0	1	0	0	0	13907	188	7	5	706	5	S1PR4	19	3179494	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	957123	3179494	55949489	2016	154426											
MATK	4145	broad.mit.edu	37	chr19	3778603	3778603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgaacttctgtggggcCcgagacgggggtgaggaggg	21	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3778603	A	A	3778603	1	1	191	0	1	0	0	0	0	0	0	0	9424	638	22	2		2	MATK	19	3778603	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	599109	3778603	55350380	2017	154427											
ITGB1BP3	27231	broad.mit.edu	37	chr19	3942236	3942236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggatgcggccacagaacgGccaggcctgcagcgtcccag	15	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3942236	T	T	3942236	3	4	191	1	0	0	0	0	1	0	0	0	7963	1203	42	3	684	3	ITGB1BP3	19	3942236	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	163633	3942236	55186747	2018	154428											
SEMA6B	10501	broad.mit.edu	37	chr19	4556015	4556015	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacgctgtagttggcgcaCaccgggttgaaggcgttgga	15	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4556015	A	A	4556015	2	1	191	1	0	0	0	0	0	0	0	1	14153	465	17	3		3	SEMA6B	19	4556015	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	613779	4556015	54572968	2019	154429											
PLIN3	10226	broad.mit.edu	37	chr19	4839200	4839200	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccgctgagtcctctcctctCcccctacttcttctcctccg	4	22	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4839200	A	A	4839200	1	1	191	0	1	0	0	0	0	0	0	0	12186	870	30	3		3	PLIN3	19	4839200	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	283185	4839200	54289783	2020	154430											
PTPRS	5802	broad.mit.edu	37	chr19	5286034	5286034	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaacaaacacgcagaccCctgcacatcccgtgccggct	9	16	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5286034	A	A	5286034	1	1	191	0	1	0	0	0	0	0	0	0	12919	638	22	2		2	PTPRS	19	5286034	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	446834	5286034	53842949	2021	154431											
TMEM146	257062	broad.mit.edu	37	chr19	5754307	5754307	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggattctcagccacatgcctGgtgcccactcccagattctg	9	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5754307	C	C	5754307	1	2	191	0	1	0	0	0	0	0	0	0	16183	1363	47	4		4	TMEM146	19	5754307	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	468273	5754307	53374676	2022	154432											
SLC25A41	284427	broad.mit.edu	37	chr19	6433462	6433462	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctccctgtagtcctgacCagaggtgccgggacactggt	12	14	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6433462	A	A	6433462	1	1	191	0	1	0	0	0	0	0	0	0	14620	609	21	2		2	SLC25A41	19	6433462	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	679155	6433462	52695521	2023	154433											
TUBB4	10382	broad.mit.edu	37	chr19	6495419	6495419	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgccgatgaaggtcgcgGccatcttcaggccgcggggc	16	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6495419	T	T	6495419	3	4	191	1	0	0	0	0	1	0	0	0	16884	1203	42	3	247	3	TUBB4	19	6495419	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	61957	6495419	52633564	2024	154434											
PEX11G	92960	broad.mit.edu	37	chr19	7543247	7543247	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctctgtctcagtttcagCagcatccacagggacctgca	9	14	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7543247	A	A	7543247	2	1	191	1	0	0	0	0	0	0	0	1	11834	697	25	3		3	PEX11G	19	7543247	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1047828	7543247	51585736	2025	154435											
PNPLA6	10908	broad.mit.edu	37	chr19	7606248	7606248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagccctgcagatcatcatGgtgcggctgcagcgagtcac	13	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7606248	T	T	7606248	3	4	191	1	0	0	0	0	1	0	0	0	12264	1348	47	2	994	2	PNPLA6	19	7606248	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	63001	7606248	51522735	2026	154436											
FBN3	84467	broad.mit.edu	37	chr19	8130964	8130964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcagggagctgacgcCacggaggtgatgcatgcgaa	16	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8130964	A	A	8130964	3	1	191	1	0	0	0	0	1	0	0	0	5761	594	21	2	164	2	FBN3	19	8130964	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	524716	8130964	50998019	2027	154437											
FBN3	84467	broad.mit.edu	37	chr19	8154868	8154868	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acggagagggggaggggagtCagagtcagggcctaggtgca	21	6	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8154868	A	A	8154868	1	1	191	0	1	0	0	0	0	0	0	0	5761	841	29	3		3	FBN3	19	8154868	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	23904	8154868	50974115	2028	154438											
ACTL9	284382	broad.mit.edu	37	chr19	8808127	8808127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccgacgggtgacagccCcgggacctctggggggttga	19	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8808127	A	A	8808127	3	1	191	1	0	0	0	0	1	0	0	0	203	623	22	2	329	2	ACTL9	19	8808127	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	653259	8808127	50320856	2029	154439											
MUC16	94025	broad.mit.edu	37	chr19	9007664	9007664	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagagatgggtcagtctttgGagctggggcagagcagagct	17	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9007664	T	T	9007664	1	4	191	0	1	0	0	0	0	0	0	0	10067	1189	41	3		3	MUC16	19	9007664	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	199537	9007664	50121319	2030	154440											
MUC16	94025	broad.mit.edu	37	chr19	9076553	9076553	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacagttatacggccatgGggagtagacatggagtctaa	13	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9076553	T	T	9076553	2	4	191	1	0	0	0	0	0	0	0	1	10067	1219	43	2		2	MUC16	19	9076553	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	68889	9076553	50052430	2031	154441											
MUC16	94025	broad.mit.edu	37	chr19	9082905	9082906	+	Missense_Mutation	DNP	CA	AT	AT													actctgggttcatgccctgcCatagaaggggaggcagatcc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	9082906	AT	AT	9082905	3	1	191	1	0	0	0	0	1	0	0	0	10067	594	21	2	34949	2	MUC16	19	9082905	Missense_Mutation	DNP	CA	TCGA-64-5781-01A-01D-1625-08	6352	9082905	50046078	2032	154442											
MUC16	94025	broad.mit.edu	37	chr19	9088391	9088391	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttctagcagagccaggatCaggagatggagggtgagttg	17	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9088391	A	A	9088391	3	1	191	1	0	0	0	0	1	0	0	0	10067	826	29	3	40435	3	MUC16	19	9088391	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5486	9088391	50040592	2033	154443											
MUC16	94025	broad.mit.edu	37	chr19	9089293	9089293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgactccagagacacttGggaggctgagagtgctagga	14	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9089293	A	A	9089293	3	1	191	1	0	0	0	0	1	0	0	0	10067	1348	47	4	41337	4	MUC16	19	9089293	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	902	9089293	50039690	2034	154444											
FBXL12	54850	broad.mit.edu	37	chr19	9921870	9921870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccggatcttgcgcacatctCggaggtggcggctgatggcc	16	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9921870	A	A	9921870	3	1	191	1	0	0	0	0	1	0	0	0	5765	884	31	3	301	3	FBXL12	19	9921870	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	832577	9921870	49207113	2035	154445											
ICAM5	7087	broad.mit.edu	37	chr19	10405227	10405227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatggcctgagcagcagcGcgtgtcccgagaggacgcgg	16	14	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10405227	T	T	10405227	3	4	191	1	0	0	0	0	1	0	0	0	7553	1087	38	3	2175	3	ICAM5	19	10405227	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	483357	10405227	48723756	2036	154446											
KEAP1	9817	broad.mit.edu	37	chr19	10610415	10610415	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctggatgaggccagcaCcaccttgtgggccatgaact	14	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610415	A	A	10610415	3	1	191	1	0	0	0	0	1	0	0	0	8211	507	18	3	1599	3	KEAP1	19	10610415	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	205188	10610415	48518568	2037	154447											
ATG4D	84971	broad.mit.edu	37	chr19	10657466	10657466	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcatgtgtagatgggacctCtgccccccacacactagcac	9	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10657466	G	G	10657466	1	3	191	0	1	0	0	0	0	0	0	0	1103	928	32	4		4	ATG4D	19	10657466	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	47051	10657466	48471517	2038	154448											
TMED1	11018	broad.mit.edu	37	chr19	10946030	10946030	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtccagcacctccgatcacCtggggggcaggtaagagcgg	15	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10946030	T	T	10946030	5	4	191	1	0	0	0	0	0	0	1	0	16125	695	24	4	512	4	TMED1	19	10946030	Splice_Site	SNP	C	TCGA-64-5781-01A-01D-1625-08	288564	10946030	48182953	2039	154449											
LDLR	3949	broad.mit.edu	37	chr19	11224363	11224363	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctctgttgcggataccaAgggcgtgaagaggaaaacgt	14	7	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11224363	G	G	11224363	3	3	191	1	0	0	0	0	1	0	0	0	8776	72	3	5	1549	5	LDLR	19	11224363	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	278333	11224363	47904620	2040	154450											
CCDC151	115948	broad.mit.edu	37	chr19	11531872	11531872	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagccttccctctaagctGgcgaggaactaagcggggat	14	11	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11531872	T	T	11531872	2	4	191	1	0	0	0	0	0	0	0	1	2812	1335	47	2		2	CCDC151	19	11531872	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	307509	11531872	47597111	2041	154451											
ASNA1	439	broad.mit.edu	37	chr19	12856311	12856311	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgcatttcccggcatcgatGaggccatgagctatgccgag	13	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12856311	A	A	12856311	3	1	191	1	0	0	0	0	1	0	0	0	1051	1291	45	4	440	4	ASNA1	19	12856311	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1324439	12856311	46272672	2042	154452											
ASNA1	439	broad.mit.edu	37	chr19	12856385	12856385	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctgcctggggaaggggaaGagcggacacagagggcctga	20	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12856385	C	C	12856385	1	2	191	0	1	0	0	0	0	0	0	0	1051	957	33	4		4	ASNA1	19	12856385	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	74	12856385	46272598	2043	154453											
HOOK2	29911	broad.mit.edu	37	chr19	12877045	12877045	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttctccagctgaagccgcagGagcgtctccctgcagacccg	11	16	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12877045	C	C	12877045	2	2	191	1	0	0	0	0	0	0	0	1	7350	1161	41	4		4	HOOK2	19	12877045	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	20660	12877045	46251938	2044	154454											
CD97	976	broad.mit.edu	37	chr19	14499643	14499643	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtgacggtacagaggcttGagggcagcgcaggggacatc	17	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14499643	C	C	14499643	1	2	191	0	1	0	0	0	0	0	0	0	3079	1305	45	4		4	CD97	19	14499643	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1622598	14499643	44629340	2045	154455											
BRD4	23476	broad.mit.edu	37	chr19	15360012	15360012	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcctgtccctttcacggaaGaaaatggacttaagctatag	9	9	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15360012	C	C	15360012	1	2	191	0	1	0	0	0	0	0	0	0	1513	957	33	4		4	BRD4	19	15360012	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	860369	15360012	43768971	2046	154456											
CYP4F2	8529	broad.mit.edu	37	chr19	16008282	16008282	+	Missense_Mutation	SNP	C	G	G													gttgtgggaaacaccgaaggCggcggcagttgtcatagaag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16008282	G	G	16008282	3	3	191	1	0	0	0	0	1	0	0	0	4221	768	27	4	1470	4	CYP4F2	19	16008282	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	648270	16008282	43120701	2047	154457	663	2									
CYP4F2	8529	broad.mit.edu	37	chr19	16008286	16008286	+	Missense_Mutation	SNP	G	C	C													tgggaaacaccgaaggcggcGgcagttgtcatagaaggcgt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16008286	C	C	16008286	3	2	191	1	0	0	0	0	1	0	0	0	4221	1116	39	4	1474	4	CYP4F2	19	16008286	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4	16008286	43120697	2048	154458	663	2									
CIB3	117286	broad.mit.edu	37	chr19	16284217	16284217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaaacccactgaggacCcatcctgcccccctctacct	5	19	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16284217	A	A	16284217	1	1	191	0	1	0	0	0	0	0	0	0	3453	638	22	2		2	CIB3	19	16284217	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	275931	16284217	42844766	2049	154459											
HAUS8	93323	broad.mit.edu	37	chr19	17186188	17186188	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctacaaatccagacctgcGgaagccccaactcacccagc	7	17	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17186188	A	A	17186188	1	1	191	0	1	0	0	0	0	0	0	0	7038	1131	39	4		4	HAUS8	19	17186188	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	901971	17186188	41942795	2050	154460											
MYO9B	4650	broad.mit.edu	37	chr19	17265191	17265191	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaggctcaagcaggccatgGagatggtgggcttcctcccc	14	12	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17265191	A	A	17265191	3	1	191	1	0	0	0	0	1	0	0	0	10179	1175	41	4	1183	4	MYO9B	19	17265191	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	79003	17265191	41863792	2051	154461											
ANO8	57719	broad.mit.edu	37	chr19	17438406	17438406	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcaggagggctcaggcgGggtccagccggcctccccag	18	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17438406	A	A	17438406	1	1	191	0	1	0	0	0	0	0	0	0	703	1247	43	4		4	ANO8	19	17438406	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	173215	17438406	41690577	2052	154462											
SLC5A5	6528	broad.mit.edu	37	chr19	17986864	17986864	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatgcttgtgggcgggcCccgccaggtgctcacgctgg	16	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17986864	T	T	17986864	3	4	191	1	0	0	0	0	1	0	0	0	14782	623	22	4	665	4	SLC5A5	19	17986864	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	548458	17986864	41142119	2053	154463											
GMIP	51291	broad.mit.edu	37	chr19	19751491	19751491	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacagcctcacagctcccCaaacactactttgggatcac	5	17	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19751491	A	A	19751491	1	1	191	0	1	0	0	0	0	0	0	0	6555	609	21	2		2	GMIP	19	19751491	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1764627	19751491	39377492	2054	154464											
ZNF43	7594	broad.mit.edu	37	chr19	22018890	22018890	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctgtggatcccccaataCccgcaggtcacagagccaca	9	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22018890	A	A	22018890	1	1	191	0	1	0	0	0	0	0	0	0	18030	522	18	3		3	ZNF43	19	22018890	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	2267399	22018890	37110093	2055	154465											
ZNF676	163223	broad.mit.edu	37	chr19	22363097	22363097	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttcacatttgtaaggtttCtctgcagcatgaattctctt	6	9	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363097	A	A	22363097	3	1	191	1	0	0	0	0	1	0	0	0	18210	912	32	3	348	3	ZNF676	19	22363097	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	344207	22363097	36765886	2056	154466											
ZNF492	57615	broad.mit.edu	37	chr19	22836109	22836109	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgtatgtttttcagGgagtgttgacatttagggat	13	2	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22836109	T	T	22836109	1	4	191	0	1	0	0	0	0	0	0	0	18070	1246	43	2		2	ZNF492	19	22836109	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	473012	22836109	36292874	2057	154467											
ZNF536	9745	broad.mit.edu	37	chr19	31039133	31039133	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttctctcctctggagatcaCtcggggcaggccacgggcat	13	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31039133	G	G	31039133	3	3	191	1	0	0	0	0	1	0	0	0	18101	564	20	4	2617	4	ZNF536	19	31039133	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	8203024	31039133	28089850	2058	154468											
ZNF536	9745	broad.mit.edu	37	chr19	31039148	31039148	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatcactcggggcaggccacGggcatgtcttcggaggtccc	15	13	2	0	rs142296958		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31039148	C	C	31039148	2	2	191	1	0	0	0	0	0	0	0	1	18101	1103	39	4		4	ZNF536	19	31039148	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	15	31039148	28089835	2059	154469											
TSHZ3	57616	broad.mit.edu	37	chr19	31767679	31767679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgttcggtggacagtttgGataagtcccgtagccggaag	14	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31767679	T	T	31767679	3	4	191	1	0	0	0	0	1	0	0	0	16750	1174	41	3	229	3	TSHZ3	19	31767679	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	728531	31767679	27361304	2060	154470											
TSHZ3	57616	broad.mit.edu	37	chr19	31769600	31769601	+	Nonsense_Mutation	DNP	CG	AT	AT													gctggccccattctggtggcCgtaccgattatttggcgtga							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	31769601	AT	AT	31769600	4	1	191	1	0	0	0	0	0	1	0	0	16750	652	23	1	2150	1	TSHZ3	19	31769600	Nonsense_Mutation	DNP	CG	TCGA-64-5781-01A-01D-1625-08	1921	31769600	27359383	2061	154471											
ANKRD27	84079	broad.mit.edu	37	chr19	33113555	33113555	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatggggaaatggcatcgctCatggatgtaccaagcctcga	13	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33113555	A	A	33113555	1	1	191	0	1	0	0	0	0	0	0	0	655	841	29	3		3	ANKRD27	19	33113555	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1343955	33113555	26015428	2062	154472											
NUDT19	390916	broad.mit.edu	37	chr19	33202918	33202918	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcctcatgaataatgagGgttgactttcatttgcttga	9	6	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33202918	T	T	33202918	1	4	191	0	1	0	0	0	0	0	0	0	10831	1247	43	2		2	NUDT19	19	33202918	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	89363	33202918	25926065	2063	154473											
GRAMD1A	57655	broad.mit.edu	37	chr19	35510014	35510014	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacaggtccccagagagacCtcccagaaggctgagtctcc	12	14	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35510014	T	T	35510014	1	4	191	0	1	0	0	0	0	0	0	0	6813	696	24	4		4	GRAMD1A	19	35510014	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2307096	35510014	23618969	2064	154474											
FXYD3	5349	broad.mit.edu	37	chr19	35611933	35611933	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggccctgcccaaaggcttgGctgaggccggcatcaccatc	12	15	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35611933	C	C	35611933	1	2	191	0	1	0	0	0	0	0	0	0	6179	1218	42	4		4	FXYD3	19	35611933	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	101919	35611933	23517050	2065	154475											
FAM187B	148109	broad.mit.edu	37	chr19	35719355	35719355	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttaatgagaaggctgccctCgggcattatttccatattgg	10	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35719355	A	A	35719355	4	1	191	1	0	0	0	0	0	1	0	0	5559	893	31	3	888	3	FAM187B	19	35719355	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	107422	35719355	23409628	2066	154476											
CD22	933	broad.mit.edu	37	chr19	35835872	35835872	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctcctctatcccttggcaGaggcccgtgtccagttgctc	9	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35835872	C	C	35835872	1	2	191	0	1	0	0	0	0	0	0	0	3015	957	33	4		4	CD22	19	35835872	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	116517	35835872	23293111	2067	154477											
SBSN	374897	broad.mit.edu	37	chr19	36017517	36017517	+	Intron	DEL	C	-	-													ccctcccccaacccccctgtCccccatctccccatccctgt							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36017517	-	-	36017517	6	5	191	0	1	1	0	1	0	0	0	0	13976	870	30	0		0	SBSN	19	36017517	Intron	DEL	C	TCGA-64-5781-01A-01D-1625-08	181645	36017517	23111466	2068	154478											
KIRREL2	84063	broad.mit.edu	37	chr19	36350339	36350339	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagccaaaagattggacacCcctgatgggtagatggcatt	11	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36350339	T	T	36350339	1	4	191	0	1	0	0	0	0	0	0	0	8396	638	22	4		4	KIRREL2	19	36350339	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	332822	36350339	22778644	2069	154479											
ZFP82	284406	broad.mit.edu	37	chr19	36900715	36900715	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atagaaattcaagaactggtCagtcctccttggggtttact	9	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36900715	T	T	36900715	1	4	191	0	1	0	0	0	0	0	0	0	17779	841	29	4		4	ZFP82	19	36900715	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	550376	36900715	22228268	2070	154480											
ZNF570	148268	broad.mit.edu	37	chr19	37975731	37975731	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccagaattcacaccttgctCaacatcagagaattcatact	5	12	4	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37975731	T	T	37975731	4	4	191	1	0	0	0	0	0	1	0	0	18129	827	29	4	1221	4	ZNF570	19	37975731	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1075016	37975731	21153252	2071	154481											
ZNF781	163115	broad.mit.edu	37	chr19	38184215	38184215	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccattggaggaggactgGggccacccagatgattgatt	14	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38184215	A	A	38184215	1	1	191	0	1	0	0	0	0	0	0	0	18283	1247	43	4		4	ZNF781	19	38184215	5'Flank	SNP	G	TCGA-64-5781-01A-01D-1625-08	208484	38184215	20944768	2072	154482											
ZNF573	126231	broad.mit.edu	37	chr19	38282414	38282414	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggaggaacagcacagcatGctgggctctggatttaaagc	13	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38282414	C	C	38282414	1	2	191	0	1	0	0	0	0	0	0	0	18132	1334	46	4		4	ZNF573	19	38282414	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	98199	38282414	20846569	2073	154483											
KCNK6	9424	broad.mit.edu	37	chr19	38818064	38818064	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggcagcctctgccaggCttgggtgtgcctggcctggg	18	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38818064	A	A	38818064	1	1	191	0	1	0	0	0	0	0	0	0	8140	812	28	3		3	KCNK6	19	38818064	3'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	535650	38818064	20310919	2074	154484											
GGN	199720	broad.mit.edu	37	chr19	38877550	38877550	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcggcggatccggggaactgGagtgcccgcgggcttttgcc	18	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38877550	A	A	38877550	3	1	191	1	0	0	0	0	1	0	0	0	6422	1174	41	4	1614	4	GGN	19	38877550	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	59486	38877550	20251433	2075	154485											
MAP4K1	11184	broad.mit.edu	37	chr19	39108378	39108378	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgcagcctcctccctgccGagggcttgccttaaaggtca	10	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39108378	T	T	39108378	1	4	191	0	1	0	0	0	0	0	0	0	9351	1073	37	3		3	MAP4K1	19	39108378	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	230828	39108378	20020605	2076	154486											
ACTN4	81	broad.mit.edu	37	chr19	39138465	39138465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgctggcggcgggggcaGcatgggcgactacatggccc	19	12	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39138465	T	T	39138465	3	4	191	1	0	0	0	0	1	0	0	0	207	971	34	3	82	3	ACTN4	19	39138465	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	30087	39138465	19990518	2077	154487											
SAMD4B	55095	broad.mit.edu	37	chr19	39869131	39869131	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttaacctcctgccctttctCatgtccccccagtgtgcacc	6	18	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39869131	G	G	39869131	1	3	191	0	1	0	0	0	0	0	0	0	13933	841	29	4		4	SAMD4B	19	39869131	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	730666	39869131	19259852	2078	154488											
PLD3	23646	broad.mit.edu	37	chr19	40876170	40876170	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaccctgtctaccttcCttccaggccactccctgccc	5	21	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40876170	T	T	40876170	1	4	191	0	1	0	0	0	0	0	0	0	12142	696	24	4		4	PLD3	19	40876170	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1007039	40876170	18252813	2079	154489											
SERTAD3	29946	broad.mit.edu	37	chr19	40947909	40947909	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggcttgctggtagctctGaaggcctgctggactccact	13	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40947909	A	A	40947909	4	1	191	1	0	0	0	0	0	1	0	0	14235	1299	45	4	515	4	SERTAD3	19	40947909	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	71739	40947909	18181074	2080	154490											
CYP2A7	1549	broad.mit.edu	37	chr19	41455134	41455134	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagatctgcttcctgcccCgctgaaggggctgagggaag	14	12	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41455134	T	T	41455134	1	4	191	0	1	0	0	0	0	0	0	0	4196	667	23	4		4	CYP2A7	19	41455134	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	507225	41455134	17673849	2081	154491											
CYP2B6	1555	broad.mit.edu	37	chr19	41512853	41512853	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccagtccattaccgcCaacatcatctgctccatcgt	4	17	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41512853	T	T	41512853	2	4	191	1	0	0	0	0	0	0	0	1	4197	581	21	4		4	CYP2B6	19	41512853	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	57719	41512853	17616130	2082	154492											
CYP2B6	1555	broad.mit.edu	37	chr19	41522588	41522588	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaggcatcgcccgtgcGgaattgttcctcttcttcac	11	12	3	1	rs141626689		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41522588	T	T	41522588	2	4	191	1	0	0	0	0	0	0	0	1	4197	1103	39	1		1	CYP2B6	19	41522588	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	9735	41522588	17606395	2083	154493											
CEACAM4	1089	broad.mit.edu	37	chr19	42128180	42128180	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggggacaaggcccaagtTtgttccaagggaaaccataa	11	8	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42128180	G	G	42128180	1	3	191	0	1	0	0	0	0	0	0	0	3224	1856	64	5		5	CEACAM4	19	42128180	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	605592	42128180	17000803	2084	154494											
DMRTC2	63946	broad.mit.edu	37	chr19	42354262	42354262	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtcaagacacagcttaatGgcccagcaggctctcagatt	9	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42354262	A	A	42354262	1	1	191	0	1	0	0	0	0	0	0	0	4631	1363	47	4		4	DMRTC2	19	42354262	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	226082	42354262	16774721	2085	154495											
PSG6	5675	broad.mit.edu	37	chr19	43522744	43522744	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagcagcctcttttctccCactgtggatcaagcctaggc	10	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43522744	T	T	43522744	1	4	191	0	1	0	0	0	0	0	0	0	12765	609	21	4		4	PSG6	19	43522744	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1168482	43522744	15606239	2086	154496											
PSG11	5680	broad.mit.edu	37	chr19	43523025	43523025	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgtgacaccaaatagaaaGagggtcctgttggtttcaga	11	6	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43523025	C	C	43523025	2	2	191	1	0	0	0	0	0	0	0	1	12760	929	33	4		4	PSG11	19	43523025	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	281	43523025	15605958	2087	154497											
PSG6	5675	broad.mit.edu	37	chr19	43576589	43576589	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcctgtttcatttctcGtgacactgggtagaatgagg	13	7	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43576589	T	T	43576589	1	4	191	0	1	0	0	0	0	0	0	0	12765	1160	40	3		3	PSG6	19	43576589	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	53564	43576589	15552394	2088	154498											
PSG9	5678	broad.mit.edu	37	chr19	43762581	43762581	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacggtaataggtgaatgaaGggtaaattctggggaggtct	15	3	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43762581	A	A	43762581	3	1	191	1	0	0	0	0	1	0	0	0	12768	1000	35	4	272	4	PSG9	19	43762581	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	185992	43762581	15366402	2089	154499											
ZNF230	7773	broad.mit.edu	37	chr19	44515399	44515399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgggaagagctttagccGggcttcaagtattttgaatc	12	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44515399	T	T	44515399	3	4	191	1	0	0	0	0	1	0	0	0	17910	1116	39	1	1222	1	ZNF230	19	44515399	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	752818	44515399	14613584	2090	154500											
CEACAM19	56971	broad.mit.edu	37	chr19	45183600	45183600	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaattgggccctgctcatGatgctggtaaggcgggagcc	15	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45183600	T	T	45183600	3	4	191	1	0	0	0	0	1	0	0	0	3220	1290	45	3	718	3	CEACAM19	19	45183600	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	668201	45183600	13945383	2091	154501											
NKPD1	284353	broad.mit.edu	37	chr19	45655751	45655752	+	Frame_Shift_Ins	INS	-	T	T													ccaccgcctggcgcggcgtgINSgggcccccaaagtccccctg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45655752	T	T	45655751	7	5	191	1	0	1	1	0	0	0	0	0	10541	1335	47	0	558	0	NKPD1	19	45655751	Frame_Shift_Ins	INS	-	TCGA-64-5781-01A-01D-1625-08	472151	45655751	13473232	2092	154502											
EXOC3L2	90332	broad.mit.edu	37	chr19	45716578	45716578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggcggctgtgttgcgcaGgccacggatgtcgaggaggg	21	9	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45716578	T	T	45716578	3	4	191	1	0	0	0	0	1	0	0	0	5347	991	35	2	254	2	EXOC3L2	19	45716578	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	60827	45716578	13412405	2093	154503											
ERCC2	2068	broad.mit.edu	37	chr19	45867586	45867586	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggagtcgatgcagacgTtgtctggagaagggggagag	18	5	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45867586	A	A	45867586	3	1	191	1	0	0	0	0	1	0	0	0	5255	1725	60	5	1677	5	ERCC2	19	45867586	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	151008	45867586	13261397	2094	154504											
PNMAL2	57469	broad.mit.edu	37	chr19	46997168	46997168	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cggctccgacgcctcgctctCggtgtcctccgactcctcct	9	20	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46997168	T	T	46997168	3	4	191	1	0	0	0	0	1	0	0	0	12253	893	31	4	356	4	PNMAL2	19	46997168	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1129582	46997168	12131815	2095	154505											
SLC8A2	6543	broad.mit.edu	37	chr19	47969343	47969343	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggccttggtgatggtgatCtccttctcttttgacgtgat	11	8	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47969343	G	G	47969343	3	3	191	1	0	0	0	0	1	0	0	0	14821	912	32	4	2483	4	SLC8A2	19	47969343	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	972175	47969343	11159640	2096	154506											
KPTN	11133	broad.mit.edu	37	chr19	47978650	47978650	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgagtcgccccaggtctGggaagagtgggtgcatgggt	17	9	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47978650	A	A	47978650	1	1	191	0	1	0	0	0	0	0	0	0	8508	1363	47	4		4	KPTN	19	47978650	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	9307	47978650	11150333	2097	154507											
LIG1	3978	broad.mit.edu	37	chr19	48639152	48639152	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccgcggcccaagacgcccCctcccccccacccaggagag	10	22	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48639152	A	A	48639152	1	1	191	0	1	0	0	0	0	0	0	0	8853	638	22	2		2	LIG1	19	48639152	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	660502	48639152	10489831	2098	154508											
LMTK3	114783	broad.mit.edu	37	chr19	49013301	49013301	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgtgaaggctgcggggCaggcattggcagggagacct	19	7	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49013301	T	T	49013301	3	4	191	1	0	0	0	0	1	0	0	0	8934	710	25	4	4094	4	LMTK3	19	49013301	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	374149	49013301	10115682	2099	154509											
CGB5	93659	broad.mit.edu	37	chr19	49547453	49547453	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccaggtacacgaggcagGggacgcaccaaggatggaga	16	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49547453	T	T	49547453	1	4	191	0	1	0	0	0	0	0	0	0	3329	1247	43	2		2	CGB5	19	49547453	5'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	534152	49547453	9581530	2100	154510											
CGB7	94027	broad.mit.edu	37	chr19	49558646	49558646	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccatccttggtgcgtccCctgcctggtgtacctggctt	10	15	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49558646	A	A	49558646	1	1	191	0	1	0	0	0	0	0	0	0	3330	638	22	2		2	CGB7	19	49558646	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	11193	49558646	9570337	2101	154511											
HRC	3270	broad.mit.edu	37	chr19	49657763	49657763	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatcatcgtcatcttcTtcatggccttggtgcctgtg	8	12	7	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49657763	C	C	49657763	2	2	191	1	0	0	0	0	0	0	0	1	7419	1606	56	5		5	HRC	19	49657763	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	99117	49657763	9471220	2102	154512											
GPR32	2854	broad.mit.edu	37	chr19	51273984	51273984	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggaggtggggtccctcCgcccactgactgtggttatc	14	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51273984	G	G	51273984	3	3	191	1	0	0	0	0	1	0	0	0	6753	652	23	4	129	4	GPR32	19	51273984	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1616221	51273984	7854999	2103	154513											
KLK15	55554	broad.mit.edu	37	chr19	51330130	51330130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagctccatcctttcacGcaccttgtgaccgggggctc	9	16	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51330130	T	T	51330130	1	4	191	0	1	0	0	0	0	0	0	0	8474	1102	38	3		3	KLK15	19	51330130	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	56146	51330130	7798853	2104	154514											
KLK2	3817	broad.mit.edu	37	chr19	51381924	51381924	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcttggaactcacctggccGaagctcgagcctcctgagtc	11	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51381924	T	T	51381924	1	4	191	0	1	0	0	0	0	0	0	0	8475	1073	37	3		3	KLK2	19	51381924	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	51794	51381924	7747059	2105	154515											
KLK7	5650	broad.mit.edu	37	chr19	51483572	51483572	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgcagcgggagggcagcctGactttcttcaccatggatga	13	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51483572	A	A	51483572	2	1	191	1	0	0	0	0	0	0	0	1	8480	1277	45	4		4	KLK7	19	51483572	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	101648	51483572	7645411	2106	154516											
KLK9	284366	broad.mit.edu	37	chr19	51507026	51507026	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccgagatgtgtccaggGtatgcccagtgacagagttt	13	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51507026	T	T	51507026	4	4	191	1	0	0	0	0	0	1	0	0	8482	1256	44	3	223	3	KLK9	19	51507026	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	23454	51507026	7621957	2107	154517											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002672	52002672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccgatcaaagacccagaCgtcctggcccagaactcaca	7	16	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52002672	A	A	52002672	1	1	191	0	1	0	0	0	0	0	0	0	14421	551	19	3		3	SIGLEC12	19	52002672	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	495646	52002672	7126311	2108	154518											
ZNF600	162966	broad.mit.edu	37	chr19	53268921	53268921	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggctttgccacactcattAcacttgtaaggtttctctcc	6	12	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53268921	G	G	53268921	2	3	191	1	0	0	0	0	0	0	0	1	18157	389	14	5		5	ZNF600	19	53268921	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	1266249	53268921	5860062	2109	154519											
ZNF813	126017	broad.mit.edu	37	chr19	53994115	53994116	+	Frame_Shift_Del	DEL	TG	-	-													acaaaaacaggaggtacacaTgagagaaaagtctttccaat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53994116	-	-	53994115	7	5	191	1	0	1	0	1	0	0	0	0	18304	1464	51	0	639	0	ZNF813	19	53994115	Frame_Shift_Del	DEL	TG	TCGA-64-5781-01A-01D-1625-08	725194	53994115	5134868	2110	154520											
PRKCG	5582	broad.mit.edu	37	chr19	54403579	54403579	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaggagccccatgcagcGtgagtctcggccaacagaga	12	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54403579	A	A	54403579	5	1	191	1	0	0	0	0	0	0	1	0	12618	1159	40	4	1420	4	PRKCG	19	54403579	Splice_Site	SNP	G	TCGA-64-5781-01A-01D-1625-08	409464	54403579	4725404	2111	154521											
LILRB5	10990	broad.mit.edu	37	chr19	54754838	54754839	+	Intron	INS	-	G	G													gtaaggaacgtggtgggggtINSggggaggcctgggggcctgg					rs11375503		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54754839	G	G	54754838	6	5	191	0	1	1	1	0	0	0	0	0	8866	1711	59	0		0	LILRB5	19	54754838	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	351259	54754838	4374145	2112	154522											
LILRB5	10990	broad.mit.edu	37	chr19	54761079	54761079	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcagctcccactggactcAgctgtgcaggcggatgagac	13	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54761079	C	C	54761079	1	2	191	0	1	0	0	0	0	0	0	0	8866	203	7	5		5	LILRB5	19	54761079	5'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	6241	54761079	4367904	2113	154523											
LAIR1	3903	broad.mit.edu	37	chr19	54866781	54866781	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggctggctttctagatgAagaggaatccaacaggaagc	12	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54866781	G	G	54866781	1	3	191	0	1	0	0	0	0	0	0	0	8674	261	9	5		5	LAIR1	19	54866781	3'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	105702	54866781	4262202	2114	154524											
LAIR1	3903	broad.mit.edu	37	chr19	54867646	54867646	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacatggtcagttttctGgggaggatgtcgcaaggcaa	13	6	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54867646	T	T	54867646	1	4	191	0	1	0	0	0	0	0	0	0	8674	1363	47	2		2	LAIR1	19	54867646	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	865	54867646	4261337	2115	154525											
LILRA2	11027	broad.mit.edu	37	chr19	55085190	55085190	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtatgacagccaggctcCtgagagggcagttgcacttc	13	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55085190	T	T	55085190	1	4	191	0	1	0	0	0	0	0	0	0	8857	696	24	4		4	LILRA2	19	55085190	5'Flank	SNP	C	TCGA-64-5781-01A-01D-1625-08	217544	55085190	4043793	2116	154526											
LILRA1	11024	broad.mit.edu	37	chr19	55106837	55106837	+	Frame_Shift_Del	DEL	C	-	-													ctccccatgtgtggtctctaCccagtgatctcctggagctc							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55106837	-	-	55106837	7	5	191	1	0	1	0	1	0	0	0	0	8856	507	18	0	645	0	LILRA1	19	55106837	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	21647	55106837	4022146	2117	154527											
LILRB4	11006	broad.mit.edu	37	chr19	55176161	55176161	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatggtccttgggaagcTgcagggcagatatagggaga	16	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55176161	G	G	55176161	1	3	191	0	1	0	0	0	0	0	0	0	8865	1595	55	5		5	LILRB4	19	55176161	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	69324	55176161	3952822	2118	154528											
LILRB4	11006	broad.mit.edu	37	chr19	55179176	55179176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatggcctctcctccctccCcactgtctggggaattcctg	8	16	2	0	rs144033928	byFrequency;by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55179176	A	A	55179176	3	1	191	1	0	0	0	0	1	0	0	0	8865	623	22	2	1174	2	LILRB4	19	55179176	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3015	55179176	3949807	2119	154529											
NLRP7	199713	broad.mit.edu	37	chr19	55450962	55450962	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtccgcagcgcgccccGcagctgtgcgccctgcggga	15	18	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55450962	T	T	55450962	2	4	191	1	0	0	0	0	0	0	0	1	10577	1086	38	3		3	NLRP7	19	55450962	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	271786	55450962	3678021	2120	154530											
NLRP2	55655	broad.mit.edu	37	chr19	55485245	55485245	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtggcaagcaccaccccCacaaagtgacacaaggcaag	10	13	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55485245	T	T	55485245	1	4	191	0	1	0	0	0	0	0	0	0	10572	609	21	4		4	NLRP2	19	55485245	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	34283	55485245	3643738	2121	154531											
NLRP9	338321	broad.mit.edu	37	chr19	56244283	56244283	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaagaagtaggagaaatacGacttcttttcagattcactg	8	7	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56244283	T	T	56244283	4	4	191	1	0	0	0	0	0	1	0	0	10579	1059	37	3	2093	3	NLRP9	19	56244283	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	759038	56244283	2884700	2122	154532											
NLRP8	126205	broad.mit.edu	37	chr19	56466489	56466489	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctctcgtaacccttccGgggtttaatacgatggaaaa	8	12	1	0	rs149180489		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56466489	T	T	56466489	2	4	191	1	0	0	0	0	0	0	0	1	10578	1103	39	1		1	NLRP8	19	56466489	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	222206	56466489	2662494	2123	154533											
NLRP8	126205	broad.mit.edu	37	chr19	56477783	56477783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttagagtgggaaccgggGtacccggatggtcttttcaa	16	7	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56477783	T	T	56477783	1	4	191	0	1	0	0	0	0	0	0	0	10578	1276	44	3		3	NLRP8	19	56477783	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	11294	56477783	2651200	2124	154534											
PEG3	5178	broad.mit.edu	37	chr19	57335796	57335796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttggtgcgggtctccggCtgcaaccaatcgaggcagag	14	12	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57335796	A	A	57335796	3	1	191	1	0	0	0	0	1	0	0	0	11814	811	28	3		3	PEG3	19	57335796	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	858013	57335796	1793187	2125	154535											
USP29	57663	broad.mit.edu	37	chr19	57640629	57640629	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaccaaacaagaaatatAagacagattccttgaaatat	5	7	0	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57640629	T	T	57640629	4	4	191	1	0	0	0	0	0	1	0	0	17186	363	13	5	588	5	USP29	19	57640629	Nonsense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	304833	57640629	1488354	2126	154536											
ZIM3	114026	broad.mit.edu	37	chr19	57649714	57649714	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgcctcaccctagtccCggctctacaaaaacatatgc	5	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57649714	T	T	57649714	1	4	191	0	1	0	0	0	0	0	0	0	17811	667	23	4		4	ZIM3	19	57649714	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	9085	57649714	1479269	2127	154537											
ZNF773	374928	broad.mit.edu	37	chr19	58018006	58018006	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cataggagctccaaaagtagGgaggcctttcatgctggaaa	12	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58018006	A	A	58018006	2	1	191	1	0	0	0	0	0	0	0	1	18275	1223	43	4		4	ZNF773	19	58018006	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	368292	58018006	1110977	2128	154538											
ZNF416	55659	broad.mit.edu	37	chr19	58087211	58087211	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagttctccagcatcacatCgcggtacaggagcctctgag	10	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58087211	G	G	58087211	3	3	191	1	0	0	0	0	1	0	0	0	18020	884	31	4	1629	4	ZNF416	19	58087211	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	69205	58087211	1041772	2129	154539											
ZNF324B	388569	broad.mit.edu	37	chr19	58962953	58962953	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcgcgtattggggcaatGtgagctctgggggctggact	18	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58962953	A	A	58962953	1	1	191	0	1	0	0	0	0	0	0	0	17971	1392	48	4		4	ZNF324B	19	58962953	5'Flank	SNP	G	TCGA-64-5781-01A-01D-1625-08	875742	58962953	166030	2130	154540											
FASTKD5	60493	broad.mit.edu	37	chr20	3129210	3129210	+	Frame_Shift_Del	DEL	C	-	-													tctgcaggcaaagagctcagCttacacaaataatcaacaat							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3129210	-	-	3129210	7	5	191	1	0	1	0	1	0	0	0	0	5745	796	28	0	1791	0	FASTKD5	20	3129210	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08		3129210	59896310	2131	154541											
PANK2	80025	broad.mit.edu	37	chr20	3899210	3899210	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggactaaatttgatcagcAgtcaaattgttgctaagagc	9	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3899210	T	T	3899210	1	4	191	0	1	0	0	0	0	0	0	0	11511	203	7	5		5	PANK2	20	3899210	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	770000	3899210	59126310	2132	154542											
FERMT1	55612	broad.mit.edu	37	chr20	6068532	6068532	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgggcacaacttcgcagccTgaaggacaaagatcagagac	11	11	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6068532	A	A	6068532	5	1	191	1	0	0	0	0	0	0	1	0	5874	1594	55	5	790	5	FERMT1	20	6068532	Splice_Site	SNP	T	TCGA-64-5781-01A-01D-1625-08	2169322	6068532	56956988	2133	154543											
FERMT1	55612	broad.mit.edu	37	chr20	6096636	6096636	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagtgggttttcagaagCcagcaatgcttctgttccca	10	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6096636	T	T	6096636	4	4	191	1	0	0	0	0	0	1	0	0	5874	740	26	4	1878	4	FERMT1	20	6096636	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	28104	6096636	56928884	2134	154544											
PLCB1	23236	broad.mit.edu	37	chr20	8698550	8698550	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgttggtttaagaattgctGctctgggctgtgcgtggtgg	17	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8698550	C	C	8698550	1	2	191	0	1	0	0	0	0	0	0	0	12122	1334	46	4		4	PLCB1	20	8698550	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2601914	8698550	54326970	2135	154545											
PAK7	57144	broad.mit.edu	37	chr20	9560984	9560984	+	Missense_Mutation	SNP	C	A	A													aggtacgaagactttggcctCctgtcatagtcatccaggct							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9560984	A	A	9560984	3	1	191	1	0	0	0	0	1	0	0	0	11499	854	30	3	1389	3	PAK7	20	9560984	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	862434	9560984	53464536	2136	154546	664	2									
PAK7	57144	broad.mit.edu	37	chr20	9560986	9560986	+	Missense_Mutation	SNP	T	A	A													gtacgaagactttggcctccTgtcatagtcatccaggctgg							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9560986	A	A	9560986	3	1	191	1	0	0	0	0	1	0	0	0	11499	1579	55	5	1391	5	PAK7	20	9560986	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	2	9560986	53464534	2137	154547	664	2									
SPTLC3	55304	broad.mit.edu	37	chr20	13053194	13053194	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatttatgcctttgcaagcCctcctgatgccaggggagga	11	11	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13053194	T	T	13053194	1	4	191	0	1	0	0	0	0	0	0	0	15243	638	22	4		4	SPTLC3	20	13053194	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3492208	13053194	49972326	2138	154548											
PCSK2	5126	broad.mit.edu	37	chr20	17434420	17434420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcagcatctacgtgtggGcctccggggacggcggcagc	17	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17434420	T	T	17434420	3	4	191	1	0	0	0	0	1	0	0	0	11695	1203	42	3	953	3	PCSK2	20	17434420	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4381226	17434420	45591100	2139	154549											
CST11	140880	broad.mit.edu	37	chr20	23433334	23433334	+	Frame_Shift_Del	DEL	C	-	-													cttcgcatagttttctactgCcatcacttcatggacgctta							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23433334	-	-	23433334	7	5	191	1	0	1	0	1	0	0	0	0	4005	739	26	0	313	0	CST11	20	23433334	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	5998914	23433334	39592186	2140	154550											
DEFB118	117285	broad.mit.edu	37	chr20	29960763	29960763	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaaaatcttcgagcttgCtgcattccatccaatgaaga	7	10	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29960763	G	G	29960763	3	3	191	1	0	0	0	0	1	0	0	0	4445	805	28	4	168	4	DEFB118	20	29960763	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	6527429	29960763	33064757	2141	154551											
XKR7	343702	broad.mit.edu	37	chr20	30556125	30556125	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcggggcgggcggcccgggGccgcgctacgagctgcggga	22	13	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30556125	C	C	30556125	2	2	191	1	0	0	0	0	0	0	0	1	17563	1190	42	4		4	XKR7	20	30556125	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	595362	30556125	32469395	2142	154552											
PLAGL2	5326	broad.mit.edu	37	chr20	30789751	30789751	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtatttggaagcaaaagcCttgccacagtgcagctgagg	12	8	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30789751	T	T	30789751	2	4	191	1	0	0	0	0	0	0	0	1	12115	680	24	4		4	PLAGL2	20	30789751	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	233626	30789751	32235769	2143	154553											
COMMD7	149951	broad.mit.edu	37	chr20	31292637	31292637	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccaaatttccactccatatCtatgagctggttaatcatca	4	11	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31292637	A	A	31292637	3	1	191	1	0	0	0	0	1	0	0	0	3753	913	32	3	212	3	COMMD7	20	31292637	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	502886	31292637	31732883	2144	154554											
COMMD7	149951	broad.mit.edu	37	chr20	31294522	31294522	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacccagagttatgaaatcCgcctggacctgcttggctgt	10	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31294522	T	T	31294522	2	4	191	1	0	0	0	0	0	0	0	1	3753	639	23	4		4	COMMD7	20	31294522	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	1885	31294522	31730998	2145	154555											
BPIL1	80341	broad.mit.edu	37	chr20	31601738	31601738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttattctcgggccacgCcaacgagtttgatggcagta	10	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31601738	A	A	31601738	3	1	191	1	0	0	0	0	1	0	0	0	1500	739	26	3	445	3	BPIL1	20	31601738	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	307216	31601738	31423782	2146	154556											
C20orf186	149954	broad.mit.edu	37	chr20	31671451	31671451	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggcaggcttcaccggCgagagctgcagcctggagaa	16	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31671451	A	A	31671451	2	1	191	1	0	0	0	0	0	0	0	1	2120	760	27	3		3	C20orf186	20	31671451	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	69713	31671451	31354069	2147	154557											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31958555	31958555	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtcctccctaggactattCataagtaaaacaaaatagta	6	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31958555	G	G	31958555	1	3	191	0	1	0	0	0	0	0	0	0	3175	841	29	4		4	CDK5RAP1	20	31958555	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	287104	31958555	31066965	2148	154558											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31982967	31982967	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggtagacagacaacaaGgggtctcgtgtctcaaaagg	12	9	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31982967	T	T	31982967	1	4	191	0	1	0	0	0	0	0	0	0	3175	1015	35	2		2	CDK5RAP1	20	31982967	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	24412	31982967	31042553	2149	154559											
NECAB3	63941	broad.mit.edu	37	chr20	32258671	32258671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacccctgccaccaggtcCagggtcccaaaggcctcata	9	17	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32258671	A	A	32258671	1	1	191	0	1	0	0	0	0	0	0	0	10401	609	21	2		2	NECAB3	20	32258671	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	275704	32258671	30766849	2150	154560											
GGT7	2686	broad.mit.edu	37	chr20	33440034	33440034	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctgttgagcaggatccccGagggggtgataaggccgctg	18	9	0	2	rs142938362	byFrequency	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33440034	A	A	33440034	3	1	191	1	0	0	0	0	1	0	0	0	6428	1059	37	4	493	4	GGT7	20	33440034	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1181363	33440034	29585486	2151	154561											
ERGIC3	51614	broad.mit.edu	37	chr20	34144838	34144838	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccggagtcttcgtcctctAtgagctctcgcccatgatgg	10	14	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34144838	G	G	34144838	3	3	191	1	0	0	0	0	1	0	0	0	5267	449	16	5	1035	5	ERGIC3	20	34144838	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	704804	34144838	28880682	2152	154562											
C20orf152	140894	broad.mit.edu	37	chr20	34611601	34611601	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagcctgggaaatgagttGatacggataaggaaggaaat	14	3	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34611601	A	A	34611601	1	1	191	0	1	0	0	0	0	0	0	0	2114	1281	45	4		4	C20orf152	20	34611601	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	466763	34611601	28413919	2153	154563											
EPB41L1	2036	broad.mit.edu	37	chr20	34797560	34797560	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattgagcgcaagtgctccAgcatcacggtcagctctacg	10	14	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34797560	G	G	34797560	3	3	191	1	0	0	0	0	1	0	0	0	5194	188	7	5	1873	5	EPB41L1	20	34797560	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	185959	34797560	28227960	2154	154564											
SAMHD1	25939	broad.mit.edu	37	chr20	35539642	35539642	+	Frame_Shift_Del	DEL	C	-	-													tgtcagcttagtataggcttCcatgtcgtcaattgctgtag							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35539642	-	-	35539642	7	5	191	1	0	1	0	1	0	0	0	0	13939	864	30	0	655	0	SAMHD1	20	35539642	Frame_Shift_Del	DEL	C	TCGA-64-5781-01A-01D-1625-08	742082	35539642	27485878	2155	154565											
C20orf132	140699	broad.mit.edu	37	chr20	35740727	35740727	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccattattgctcacatacAaagaatctgcagattgttcc	6	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35740727	G	G	35740727	2	3	191	1	0	0	0	0	0	0	0	1	2108	144	5	5		5	C20orf132	20	35740727	Silent	SNP	A	TCGA-64-5781-01A-01D-1625-08	201085	35740727	27284793	2156	154566											
RPN2	6185	broad.mit.edu	37	chr20	35833128	35833128	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcgtgcatctcatttctgCtgttacttgacatccagcat	7	11	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35833128	T	T	35833128	1	4	191	0	1	0	0	0	0	0	0	0	13719	812	28	4		4	RPN2	20	35833128	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	92401	35833128	27192392	2157	154567											
TGM2	7052	broad.mit.edu	37	chr20	36776546	36776546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaaggcacctcctccaGgaagcctgcgttgaagcctc	12	14	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36776546	T	T	36776546	1	4	191	0	1	0	0	0	0	0	0	0	15953	1015	35	2		2	TGM2	20	36776546	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	943418	36776546	26248974	2158	154568											
TOP1	7150	broad.mit.edu	37	chr20	39721125	39721125	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaggtgggaagaagagCgctatcctgaaggcatcaag	13	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39721125	A	A	39721125	3	1	191	1	0	0	0	0	1	0	0	0	16487	768	27	3	662	3	TOP1	20	39721125	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2944579	39721125	23304395	2159	154569											
PTPRT	11122	broad.mit.edu	37	chr20	40757307	40757307	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagactgctctggaagggcCaccttctggaggagagtttg	14	10	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40757307	T	T	40757307	1	4	191	0	1	0	0	0	0	0	0	0	12920	609	21	4		4	PTPRT	20	40757307	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1036182	40757307	22268213	2160	154570											
IFT52	51098	broad.mit.edu	37	chr20	42242616	42242616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctttctatcactcaaaGgtacagcttttcttagatat	6	8	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42242616	T	T	42242616	3	4	191	1	0	0	0	0	1	0	0	0	7631	1014	35	2	634	2	IFT52	20	42242616	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1485309	42242616	20782904	2161	154571											
TOX2	84969	broad.mit.edu	37	chr20	42635430	42635430	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtcgggccagctgcccAcggtgagtccctatcgcctg	13	15	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42635430	T	T	42635430	3	4	191	1	0	0	0	0	1	0	0	0	16502	159	6	5	549	5	TOX2	20	42635430	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	392814	42635430	20390090	2162	154572											
RIMS4	140730	broad.mit.edu	37	chr20	43385798	43385798	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcccccatggggtctgGggaggacgcaccaggacaca	16	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43385798	A	A	43385798	1	1	191	0	1	0	0	0	0	0	0	0	13481	1247	43	4		4	RIMS4	20	43385798	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	750368	43385798	19639722	2163	154573											
ZNF335	63925	broad.mit.edu	37	chr20	44596133	44596133	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaaaccatggtggcctacCctccaggtcatcaatggctc	9	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44596133	T	T	44596133	3	4	191	1	0	0	0	0	1	0	0	0	17978	637	22	4	3165	4	ZNF335	20	44596133	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1210335	44596133	18429387	2164	154574											
MMP9	4318	broad.mit.edu	37	chr20	44641127	44641127	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgggcttagatcattcCtcagtgccggaggcgctcat	13	12	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44641127	A	A	44641127	2	1	191	1	0	0	0	0	0	0	0	1	9763	668	24	2		2	MMP9	20	44641127	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	44994	44641127	18384393	2165	154575											
SLC12A5	57468	broad.mit.edu	37	chr20	44671910	44671910	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccttatgtcttcagtgaTatgacctcctacttcaccct	4	15	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44671910	C	C	44671910	2	2	191	1	0	0	0	0	0	0	0	1	14499	1403	49	5		5	SLC12A5	20	44671910	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	30783	44671910	18353610	2166	154576											
CDH22	64405	broad.mit.edu	37	chr20	44841907	44841907	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtgggggaggggacaaggGggcccaggtgagcctctatg	20	8	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44841907	C	C	44841907	1	2	191	0	1	0	0	0	0	0	0	0	3137	1247	43	4		4	CDH22	20	44841907	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	169997	44841907	18183613	2167	154577											
SLC13A3	64849	broad.mit.edu	37	chr20	45194872	45194872	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaaggaccctcaccagcTctgccaggaccggcaggaag	12	15	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45194872	C	C	45194872	3	2	191	1	0	0	0	0	1	0	0	0	14506	1551	54	5	330	5	SLC13A3	20	45194872	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	352965	45194872	17830648	2168	154578											
ARFGEF2	10564	broad.mit.edu	37	chr20	47588817	47588817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaggttttgagccctgGttgaaactgttaattagtgt	12	4	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47588817	T	T	47588817	1	4	191	0	1	0	0	0	0	0	0	0	855	1276	44	3		3	ARFGEF2	20	47588817	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2393945	47588817	15436703	2169	154579											
CSE1L	1434	broad.mit.edu	37	chr20	47691870	47691870	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catagatattgatactagacGcagggctgcttgtgatctgg	12	7	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47691870	C	C	47691870	3	2	191	1	0	0	0	0	1	0	0	0	3964	1087	38	4	1190	4	CSE1L	20	47691870	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	103053	47691870	15333650	2170	154580											
KCNB1	3745	broad.mit.edu	37	chr20	47989936	47989936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtagatggaggactctgGgctcagcacagccttgtcca	14	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47989936	T	T	47989936	3	4	191	1	0	0	0	0	1	0	0	0	8082	1232	43	2	419	2	KCNB1	20	47989936	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	298066	47989936	15035584	2171	154581											
KCNG1	3755	broad.mit.edu	37	chr20	49626751	49626751	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggccgcagccgctgcgccCggcggtagaacgcgcccttg	16	17	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49626751	T	T	49626751	3	4	191	1	0	0	0	0	1	0	0	0	8097	652	23	4	1424	4	KCNG1	20	49626751	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1636815	49626751	13398769	2172	154582											
SALL4	57167	broad.mit.edu	37	chr20	50407808	50407808	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgaagggtctctctccaGtgtgggagcggaggtggatc	16	9	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50407808	T	T	50407808	3	4	191	1	0	0	0	0	1	0	0	0	13924	1029	36	3	1959	3	SALL4	20	50407808	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	781057	50407808	12617712	2173	154583											
TSHZ2	128553	broad.mit.edu	37	chr20	51870390	51870390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaccgctgtctacgccaaCatcctgtcggattcctactg	8	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51870390	A	A	51870390	3	1	191	1	0	0	0	0	1	0	0	0	16749	477	17	3	399	3	TSHZ2	20	51870390	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1462582	51870390	11155130	2174	154584											
TSHZ2	128553	broad.mit.edu	37	chr20	51871070	51871070	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcagttgtcctccaacaAccgctatggctaccaaaatg	7	13	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51871070	C	C	51871070	3	2	191	1	0	0	0	0	1	0	0	0	16749	43	2	5	1079	5	TSHZ2	20	51871070	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	680	51871070	11154450	2175	154585											
BCAS1	8537	broad.mit.edu	37	chr20	52601742	52601742	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaccttccatacattgttGagtacaacagttagcccaat	5	11	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52601742	A	A	52601742	1	1	191	0	1	0	0	0	0	0	0	0	1355	1305	45	4		4	BCAS1	20	52601742	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	730672	52601742	10423778	2176	154586											
C20orf85	128602	broad.mit.edu	37	chr20	56728608	56728608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctttttcaggaaataccGtctgaaggctgaatcggaag	10	7	3	2	rs16984945	byFrequency;by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56728608	T	T	56728608	3	4	191	1	0	0	0	0	1	0	0	0	2142	1145	40	3	83	3	C20orf85	20	56728608	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4126866	56728608	6296912	2177	154587											
GNAS	2778	broad.mit.edu	37	chr20	57474422	57474422	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccatctacccactggttgGtctgattttaaaatttcaga	6	9	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57474422	A	A	57474422	1	1	191	0	1	0	0	0	0	0	0	0	6574	1276	44	4		4	GNAS	20	57474422	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	745814	57474422	5551098	2178	154588											
ZNF831	128611	broad.mit.edu	37	chr20	57766700	57766700	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcagagtccgagggcgCcgggggcggcctcctggagg	19	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57766700	T	T	57766700	3	4	191	1	0	0	0	0	1	0	0	0	18314	739	26	4	628	4	ZNF831	20	57766700	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	292278	57766700	5258820	2179	154589											
ZNF831	128611	broad.mit.edu	37	chr20	57829836	57829836	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctggtcaaaaagactGttgacgcttcacaagtaaat	10	7	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57829836	T	T	57829836	1	4	191	0	1	0	0	0	0	0	0	0	18314	1392	48	3		3	ZNF831	20	57829836	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	63136	57829836	5195684	2180	154590											
EDN3	1908	broad.mit.edu	37	chr20	57896099	57896099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccctatggactgtccaaCtacagaggaagcttccgggg	13	11	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57896099	A	A	57896099	3	1	191	1	0	0	0	0	1	0	0	0	4958	564	20	3	403	3	EDN3	20	57896099	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	66263	57896099	5129421	2181	154591											
EDN3	1908	broad.mit.edu	37	chr20	57897409	57897409	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggttgattgattaaaaCcagctctctccccacagtaa	8	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57897409	A	A	57897409	1	1	191	0	1	0	0	0	0	0	0	0	4958	522	18	3		3	EDN3	20	57897409	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1310	57897409	5128111	2182	154592											
SYCP2	10388	broad.mit.edu	37	chr20	58490245	58490245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctaaaatcctttctccCatactactcctgtgaattaa	3	12	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58490245	A	A	58490245	3	1	191	1	0	0	0	0	1	0	0	0	15551	594	21	2	4127	2	SYCP2	20	58490245	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	592836	58490245	4535275	2183	154593											
CDH4	1002	broad.mit.edu	37	chr20	60419857	60419857	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcacaaggcccatggaccGggaggagcacgcctcttacc	12	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60419857	T	T	60419857	3	4	191	1	0	0	0	0	1	0	0	0	3142	1116	39	1	728	1	CDH4	20	60419857	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1929612	60419857	2605663	2184	154594											
HRH3	11255	broad.mit.edu	37	chr20	60791954	60791954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccgcactgcccgccgcGtgtcaccctgctgggcccgg	12	19	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60791954	T	T	60791954	3	4	191	1	0	0	0	0	1	0	0	0	7424	1145	40	3	895	3	HRH3	20	60791954	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	372097	60791954	2233566	2185	154595											
COL20A1	57642	broad.mit.edu	37	chr20	61938933	61938933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggccacagtcacttccaGcaggtcaaggacttcctggc	10	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61938933	T	T	61938933	3	4	191	1	0	0	0	0	1	0	0	0	3711	962	34	3	606	3	COL20A1	20	61938933	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1146979	61938933	1086587	2186	154596											
KCNQ2	3785	broad.mit.edu	37	chr20	62044944	62044944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcatgacactgcaggggGgtgggtggggctgtgagccc	19	10	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62044944	T	T	62044944	1	4	191	0	1	0	0	0	0	0	0	0	8153	1247	43	2		2	KCNQ2	20	62044944	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	106011	62044944	980576	2187	154597											
SRMS	6725	broad.mit.edu	37	chr20	62174615	62174615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggggaggagcacctagaaCagggccatgcctcgggccca	16	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62174615	A	A	62174615	1	1	191	0	1	0	0	0	0	0	0	0	15270	493	17	3		3	SRMS	20	62174615	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	129671	62174615	850905	2188	154598											
STMN3	50861	broad.mit.edu	37	chr20	62273466	62273466	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccccgcccccgcaccttctCgcgcagccgctcgcgcagtg	11	22	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62273466	T	T	62273466	3	4	191	1	0	0	0	0	1	0	0	0	15428	893	31	4	72	4	STMN3	20	62273466	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	98851	62273466	752054	2189	154599											
NPBWR2	2832	broad.mit.edu	37	chr20	62737247	62737247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaaaggcgtagaggaagGggttcaggcacgagttggcg	18	6	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62737247	T	T	62737247	3	4	191	1	0	0	0	0	1	0	0	0	10664	1232	43	2	66	2	NPBWR2	20	62737247	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	463781	62737247	288273	2190	154600											
BAGE2	85319	broad.mit.edu	37	chr21	11047424	11047424	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atagatttgaatagatatccGatttgtctgttctccatata	6	6	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11047424	T	T	11047424	1	4	191	0	1	0	0	0	0	0	0	0	1297	1073	37	3		3	BAGE2	21	11047424	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08		11047424	37082471	2191	154601											
BAGE2	85319	broad.mit.edu	37	chr21	11049609	11049609	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgcacactgcacagtttGcatcttccttcgctataatt	6	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11049609	T	T	11049609	3	4	191	1	0	0	0	0	1	0	0	0	1297	1328	46	3	41	3	BAGE2	21	11049609	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2185	11049609	37080286	2192	154602											
TMPRSS15	5651	broad.mit.edu	37	chr21	19685426	19685426	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagcataatggtagttacCagagactgaagggtgcggag	16	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19685426	G	G	19685426	1	3	191	0	1	0	0	0	0	0	0	0	16369	609	21	4		4	TMPRSS15	21	19685426	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	8635817	19685426	28444469	2193	154603											
ADAMTS5	11096	broad.mit.edu	37	chr21	28315712	28315712	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacataccatggccatcatcCaggaattctgtgatggtggc	10	10	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28315712	T	T	28315712	2	4	191	1	0	0	0	0	0	0	0	1	269	581	21	4		4	ADAMTS5	21	28315712	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	8630286	28315712	19814183	2194	154604											
KRTAP27-1	643812	broad.mit.edu	37	chr21	31709507	31709507	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgagactgacactgacaTtggctagatgcacgttccag	10	10	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31709507	G	G	31709507	3	3	191	1	0	0	0	0	1	0	0	0	8616	1490	52	5	147	5	KRTAP27-1	21	31709507	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	3393795	31709507	16420388	2195	154605											
KRTAP13-4	284827	broad.mit.edu	37	chr21	31802904	31802904	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggatctaggtgctgctactCgctgggaaatggatccagtg	14	8	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31802904	A	A	31802904	4	1	191	1	0	0	0	0	0	1	0	0	8596	893	31	3	313	3	KRTAP13-4	21	31802904	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	93397	31802904	16326991	2196	154606											
KRTAP19-4	337971	broad.mit.edu	37	chr21	31869266	31869266	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgagaatccatatcctcCatagcatgatgggcggcagt	10	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31869266	A	A	31869266	4	1	191	1	0	0	0	0	0	1	0	0	8602	603	21	2	94	2	KRTAP19-4	21	31869266	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	66362	31869266	16260629	2197	154607											
TIAM1	7074	broad.mit.edu	37	chr21	32537392	32537392	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggctgtgccctgtcagatGaaatcagaagaaaatgtggg	13	6	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32537392	A	A	32537392	1	1	191	0	1	0	0	0	0	0	0	0	16013	1305	45	4		4	TIAM1	21	32537392	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	668126	32537392	15592503	2198	154608											
IGSF5	150084	broad.mit.edu	37	chr21	41173181	41173181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgacttttttcctcctctGttgccagcgggctgatcaac	8	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41173181	T	T	41173181	1	4	191	0	1	0	0	0	0	0	0	0	7672	1392	48	3		3	IGSF5	21	41173181	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	8635789	41173181	6956714	2199	154609											
PCP4	5121	broad.mit.edu	37	chr21	41239497	41239497	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagggacctcggctgaagGattagtctcaggaaatgtga	14	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41239497	A	A	41239497	1	1	191	0	1	0	0	0	0	0	0	0	11692	1189	41	4		4	PCP4	21	41239497	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	66316	41239497	6890398	2200	154610											
MX2	4600	broad.mit.edu	37	chr21	42778787	42778787	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagatttacagtgttgttctGaagaaagtccgagaagagat	11	5	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42778787	A	A	42778787	2	1	191	1	0	0	0	0	0	0	0	1	10092	1277	45	4		4	MX2	21	42778787	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1539290	42778787	5351108	2201	154611											
MX1	4599	broad.mit.edu	37	chr21	42824753	42824753	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtccagctcggcaacagactCttccatggaggagatctttc	10	12	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42824753	G	G	42824753	3	3	191	1	0	0	0	0	1	0	0	0	10091	913	32	4	1761	4	MX1	21	42824753	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	45966	42824753	5305142	2202	154612											
UMODL1	89766	broad.mit.edu	37	chr21	43531672	43531672	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccctactgaggacccCaccggccacttcctgtggca	8	19	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43531672	A	A	43531672	2	1	191	1	0	0	0	0	0	0	0	1	17106	581	21	2		2	UMODL1	21	43531672	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	706919	43531672	4598223	2203	154613											
TFF2	7032	broad.mit.edu	37	chr21	43766726	43766726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctaggctgcgaagctggGgtgggcgtgcatcactttgc	16	10	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43766726	T	T	43766726	1	4	191	0	1	0	0	0	0	0	0	0	15927	1247	43	2		2	TFF2	21	43766726	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	235054	43766726	4363169	2204	154614											
TFF2	7032	broad.mit.edu	37	chr21	43771156	43771156	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcccctctgtttgtccaaCaagcagagataacctttctt	5	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43771156	A	A	43771156	1	1	191	0	1	0	0	0	0	0	0	0	15927	493	17	3		3	TFF2	21	43771156	5'UTR	SNP	C	TCGA-64-5781-01A-01D-1625-08	4430	43771156	4358739	2205	154615											
C21orf33	8209	broad.mit.edu	37	chr21	45557284	45557284	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggagcggcgatgggagggGgtggtgataggagcagtctc	22	5	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45557284	C	C	45557284	1	2	191	0	1	0	0	0	0	0	0	0	2147	1247	43	4		4	C21orf33	21	45557284	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1786128	45557284	2572611	2206	154616											
AIRE	326	broad.mit.edu	37	chr21	45707078	45707078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgggcttccccgggagcCcacgccccctccccacccgg	10	24	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45707078	A	A	45707078	1	1	191	0	1	0	0	0	0	0	0	0	437	638	22	2		2	AIRE	21	45707078	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	149794	45707078	2422817	2207	154617											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45994813	45994813	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaacccagctgctgccGcccagcctcctgcgtgtccc	9	21	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45994813	T	T	45994813	3	4	191	1	0	0	0	0	1	0	0	0	8582	1087	38	3	1180	3	KRTAP10-4	21	45994813	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	287735	45994813	2135082	2208	154618											
ITGB2	3689	broad.mit.edu	37	chr21	46308663	46308663	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccgtcctgctgctccagCgtgtaggccacccagcagcc	10	18	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46308663	A	A	46308663	2	1	191	1	0	0	0	0	0	0	0	1	7964	755	27	3		3	ITGB2	21	46308663	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	313850	46308663	1821232	2209	154619											
FTCD	10841	broad.mit.edu	37	chr21	47557348	47557348	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggacaggccggacttcgtCctcctcctcacaaggagccc	11	16	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47557348	A	A	47557348	1	1	191	0	1	0	0	0	0	0	0	0	6141	870	30	3		3	FTCD	21	47557348	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1248685	47557348	572547	2210	154620											
POTEH	23784	broad.mit.edu	37	chr22	16279392	16279392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttatataagatcttatggaCttacatgcatagaaagtaaa	6	4	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16279392	A	A	16279392	1	1	191	0	1	0	0	0	0	0	0	0	12363	580	20	3		3	POTEH	22	16279392	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08		16279392	35025174	2211	154621											
POTEH	23784	broad.mit.edu	37	chr22	16287187	16287187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccaggctcccctcctccCcggccaggagggtatgtccc	10	18	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16287187	A	A	16287187	1	1	191	0	1	0	0	0	0	0	0	0	12363	638	22	2		2	POTEH	22	16287187	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	7795	16287187	35017379	2212	154622											
SLC25A18	83733	broad.mit.edu	37	chr22	18070679	18070679	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagctcagtgtttctccttCctcttctgcagagacattcc	8	13	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18070679	A	A	18070679	1	1	191	0	1	0	0	0	0	0	0	0	14594	870	30	3		3	SLC25A18	22	18070679	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1783492	18070679	33233887	2213	154623											
MED15	51586	broad.mit.edu	37	chr22	20891465	20891465	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaaggatatggagagcCatgttttcctgaaggccaag	12	9	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20891465	T	T	20891465	3	4	191	1	0	0	0	0	1	0	0	0	9526	594	21	4	136	4	MED15	22	20891465	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2820786	20891465	30413101	2214	154624											
LZTR1	8216	broad.mit.edu	37	chr22	21348288	21348288	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcgcaggaagatcacgcagGcgcgggagaggctggcccag	17	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21348288	C	C	21348288	3	2	191	1	0	0	0	0	1	0	0	0	9225	1203	42	4	1479	4	LZTR1	22	21348288	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	456823	21348288	29956278	2215	154625											
BCR	613	broad.mit.edu	37	chr22	23524070	23524070	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctctgagcaggagaagcGccttacctggccccgcaggt	12	15	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23524070	T	T	23524070	3	4	191	1	0	0	0	0	1	0	0	0	1393	1087	38	3	925	3	BCR	22	23524070	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2175782	23524070	27780496	2216	154626											
CABIN1	23523	broad.mit.edu	37	chr22	24459705	24459705	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtgtgtgtgtatgtgtGtgtgtgtgtgtgtgtgcatg	20	1	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24459705	T	T	24459705	1	4	191	0	1	0	0	0	0	0	0	0	2554	1392	48	3		3	CABIN1	22	24459705	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	935635	24459705	26844861	2217	154627											
MYO18B	84700	broad.mit.edu	37	chr22	26388540	26388540	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatgccctttagccgggctGgggccacattcactgggaaa	12	12	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26388540	A	A	26388540	1	1	191	0	1	0	0	0	0	0	0	0	10160	1363	47	4		4	MYO18B	22	26388540	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1928835	26388540	24916026	2218	154628											
HPS4	89781	broad.mit.edu	37	chr22	26872994	26872994	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaacttttatggcaaactTcagttttctcagacgaacaa	5	9	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26872994	A	A	26872994	4	1	191	1	0	0	0	0	0	1	0	0	7408	1792	62	5	1929	5	HPS4	22	26872994	Nonsense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	484454	26872994	24431572	2219	154629											
CRYBA4	1413	broad.mit.edu	37	chr22	27021343	27021343	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgggggcacagtcaccCctgaatggttgtgactgtga	13	10	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27021343	A	A	27021343	1	1	191	0	1	0	0	0	0	0	0	0	3941	638	22	2		2	CRYBA4	22	27021343	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	148349	27021343	24283223	2220	154630											
HMOX1	3162	broad.mit.edu	37	chr22	35789386	35789386	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaccctgaggccgctctgCtttgctttcctatgacatca	8	14	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35789386	G	G	35789386	1	3	191	0	1	0	0	0	0	0	0	0	7310	812	28	4		4	HMOX1	22	35789386	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	8768043	35789386	15515180	2221	154631											
APOL3	80833	broad.mit.edu	37	chr22	36556806	36556806	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgcatctgcataataaCcagacacgttctccaggctc	8	14	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36556806	T	T	36556806	3	4	191	1	0	0	0	0	1	0	0	0	809	507	18	4	1086	4	APOL3	22	36556806	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	767420	36556806	14747760	2222	154632											
EIF3D	8664	broad.mit.edu	37	chr22	36922271	36922271	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagcaaagacataaatgatAgaactcaaaaagcaacacgc	6	8	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36922271	G	G	36922271	1	3	191	0	1	0	0	0	0	0	0	0	5056	435	15	5		5	EIF3D	22	36922271	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	365465	36922271	14382295	2223	154633											
SYNGR1	9145	broad.mit.edu	37	chr22	39760179	39760179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacacggctcaggaccagCaggcatgcctccttggtctc	13	14	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39760179	A	A	39760179	1	1	191	0	1	0	0	0	0	0	0	0	15567	725	25	3		3	SYNGR1	22	39760179	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	2837908	39760179	11544387	2224	154634											
CACNA1I	8911	broad.mit.edu	37	chr22	40068257	40068257	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttcaccactgtctttgtGctggaggctgtgctgaagct	12	9	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40068257	A	A	40068257	2	1	191	1	0	0	0	0	0	0	0	1	2572	1306	46	4		4	CACNA1I	22	40068257	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	308078	40068257	11236309	2225	154635											
ENTHD1	150350	broad.mit.edu	37	chr22	40283562	40283562	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtggcgccagttcttcccaTggtcattgagtctgtgccac	11	13	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40283562	A	A	40283562	3	1	191	1	0	0	0	0	1	0	0	0	5179	1464	51	5	1656	5	ENTHD1	22	40283562	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	215305	40283562	11021004	2226	154636											
L3MBTL2	83746	broad.mit.edu	37	chr22	41612354	41612354	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcctaggaatgaagactGggcaaaccggccaggtagaa	12	9	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41612354	T	T	41612354	1	4	191	0	1	0	0	0	0	0	0	0	8664	1363	47	2		2	L3MBTL2	22	41612354	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1328792	41612354	9692212	2227	154637											
ZC3H7B	23264	broad.mit.edu	37	chr22	41737150	41737150	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcagaaaccagccccctcGgtgagtgacttgagtgggga	14	11	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41737150	A	A	41737150	2	1	191	1	0	0	0	0	0	0	0	1	17699	1130	39	4		4	ZC3H7B	22	41737150	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	124796	41737150	9567416	2228	154638											
XRCC6	2547	broad.mit.edu	37	chr22	42024183	42024183	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgatgcctccaaggctatGtttgaatctcagagtgaaga	11	7	1	5			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42024183	A	A	42024183	3	1	191	1	0	0	0	0	1	0	0	0	17584	1377	48	4	150	4	XRCC6	22	42024183	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	287033	42024183	9280383	2229	154639											
EFCAB6	64800	broad.mit.edu	37	chr22	43995767	43995767	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtaagatggaatgggctaTagcttttcaattactctttg	11	5	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43995767	C	C	43995767	1	2	191	0	1	0	0	0	0	0	0	0	4979	1421	49	5		5	EFCAB6	22	43995767	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	1971584	43995767	7308799	2230	154640											
EFCAB6	64800	broad.mit.edu	37	chr22	44198750	44198750	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaaaatgcagaagctatAttgttagcacacagaacact	6	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44198750	G	G	44198750	1	3	191	0	1	0	0	0	0	0	0	0	4979	464	16	5		5	EFCAB6	22	44198750	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	202983	44198750	7105816	2231	154641											
PNPLA5	150379	broad.mit.edu	37	chr22	44282278	44282278	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacaggccccccttccagCgttggtcacagccagcatcc	10	17	1	1	rs144693499	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44282278	T	T	44282278	3	4	191	1	0	0	0	0	1	0	0	0	12263	768	27	4	451	4	PNPLA5	22	44282278	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	83528	44282278	7022288	2232	154642											
CELSR1	9620	broad.mit.edu	37	chr22	46787142	46787142	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaacttggtctgtggccacCagatgccggcctcaaatgct	11	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46787142	T	T	46787142	4	4	191	1	0	0	0	0	0	1	0	0	3251	595	21	4	2933	4	CELSR1	22	46787142	Nonsense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2504864	46787142	4517424	2233	154643											
CERK	64781	broad.mit.edu	37	chr22	47087660	47087660	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcccacagacgacttgccActcctccacgtcctctgaag	6	18	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47087660	T	T	47087660	3	4	191	1	0	0	0	0	1	0	0	0	3297	159	6	5	484	5	CERK	22	47087660	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	300518	47087660	4216906	2234	154644											
PIM3	415116	broad.mit.edu	37	chr22	50356547	50356547	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaggcgggggtgggggcctCgccctgcttgggccctccct	18	15	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50356547	T	T	50356547	1	4	191	0	1	0	0	0	0	0	0	0	12024	899	31	4		4	PIM3	22	50356547	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	3268887	50356547	948019	2235	154645											
ASMT	438	broad.mit.edu	37	chrX	1743365	1743365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggaggtgggggctgcCcccaggcagatgctgggagg	21	9	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1743365	A	A	1743365	1	1	191	0	1	0	0	0	0	0	0	0	1049	638	22	2		2	ASMT	23	1743365	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08		1743365	153527195	2236	154646											
ARSF	416	broad.mit.edu	37	chrX	2999126	2999126	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgttctacccttgatttatGactttcttggaaacgctgta	7	8	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2999126	C	C	2999126	1	2	191	0	1	0	0	0	0	0	0	0	995	1305	45	4		4	ARSF	23	2999126	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1255761	2999126	152271434	2237	154647											
TBL1X	6907	broad.mit.edu	37	chrX	9673185	9673185	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcttgtcactggtctcgaGtttgtgagaatgtgatgtgg	14	6	3	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9673185	T	T	9673185	1	4	191	0	1	0	0	0	0	0	0	0	15761	1044	36	3		3	TBL1X	23	9673185	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	6674059	9673185	145597375	2238	154648											
CLCN4	1183	broad.mit.edu	37	chrX	10162868	10162868	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccatcattgctgatgtGcccctgtctggccgccgtgt	13	13	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10162868	T	T	10162868	1	4	191	0	1	0	0	0	0	0	0	0	3496	1334	46	3		3	CLCN4	23	10162868	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	489683	10162868	145107692	2239	154649											
ARHGAP6	395	broad.mit.edu	37	chrX	11187695	11187695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgtgctctcctcagccCgggctgaactctgaactgag	12	14	3	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11187695	A	A	11187695	3	1	191	1	0	0	0	0	1	0	0	0	889	652	23	1	1327	1	ARHGAP6	23	11187695	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1024827	11187695	144082865	2240	154650											
AMELX	265	broad.mit.edu	37	chrX	11316746	11316746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtcccaacagcaccccCcgactcacaccctgcagcct	6	21	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11316746	A	A	11316746	3	1	191	1	0	0	0	0	1	0	0	0	569	623	22	2	283	2	AMELX	23	11316746	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	129051	11316746	143953814	2241	154651											
GLRA2	2742	broad.mit.edu	37	chrX	14627266	14627266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgccagggtcgcactggGcatcaccacagtcttaacga	10	15	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14627266	T	T	14627266	3	4	191	1	0	0	0	0	1	0	0	0	6519	1203	42	3	967	3	GLRA2	23	14627266	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	3310520	14627266	140643294	2242	154652											
GRPR	2925	broad.mit.edu	37	chrX	16168633	16168633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactctaatgagcttcacCccaaaatccattctatggct	4	14	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16168633	A	A	16168633	3	1	191	1	0	0	0	0	1	0	0	0	6874	623	22	2	625	2	GRPR	23	16168633	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1541367	16168633	139101927	2243	154653											
BEND2	139105	broad.mit.edu	37	chrX	18192213	18192213	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgcattccttcagggatagCattactgtttggctgcaagt	10	9	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18192213	G	G	18192213	3	3	191	1	0	0	0	0	1	0	0	0	1403	710	25	4	519	4	BEND2	23	18192213	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2023580	18192213	137078347	2244	154654											
MAP3K15	389840	broad.mit.edu	37	chrX	19443709	19443709	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacggctttcccgacatcaTgggccagcatgctgacgctg	13	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19443709	C	C	19443709	1	2	191	0	1	0	0	0	0	0	0	0	9341	1464	51	5		5	MAP3K15	23	19443709	5'UTR	SNP	T	TCGA-64-5781-01A-01D-1625-08	1251496	19443709	135826851	2245	154655											
CNKSR2	22866	broad.mit.edu	37	chrX	21534583	21534583	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtacctcaattttattgtaAtgattttgctggttaccagg	8	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21534583	T	T	21534583	1	4	191	0	1	0	0	0	0	0	0	0	3639	116	4	5		5	CNKSR2	23	21534583	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	2090874	21534583	133735977	2246	154656											
KLHL34	257240	broad.mit.edu	37	chrX	21674824	21674824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagttgcccgcggtgcaCacgctgtgccccagcagtgg	15	13	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21674824	A	A	21674824	2	1	191	1	0	0	0	0	0	0	0	1	8458	465	17	3		3	KLHL34	23	21674824	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	140241	21674824	133595736	2247	154657											
PTCHD1	139411	broad.mit.edu	37	chrX	23412035	23412035	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catggggtagctattttacaGagttacctctgctatattgt	9	7	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23412035	A	A	23412035	2	1	191	1	0	0	0	0	0	0	0	1	12838	933	33	4		4	PTCHD1	23	23412035	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1737211	23412035	131858525	2248	154658											
FAM48B2	170067	broad.mit.edu	37	chrX	24330701	24330701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtggctttacagagggCcacgaatacctctggaggca	13	10	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24330701	A	A	24330701	3	1	191	1	0	0	0	0	1	0	0	0	5625	740	26	3	1724	3	FAM48B2	23	24330701	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	918666	24330701	130939859	2249	154659											
DCAF8L2	347442	broad.mit.edu	37	chrX	27766004	27766004	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctggagcctgactctcCttataagttcctcacttcag	8	13	4	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27766004	T	T	27766004	3	4	191	1	0	0	0	0	1	0	0	0	4311	681	24	4	994	4	DCAF8L2	23	27766004	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	3435303	27766004	127504556	2250	154660											
DCAF8L1	139425	broad.mit.edu	37	chrX	27999046	27999046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccactcctccaacgcctgatCctcgtctaacaaacactgat	4	17	1	2	rs142810555		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27999046	A	A	27999046	3	1	191	1	0	0	0	0	1	0	0	0	4310	855	30	3	1400	3	DCAF8L1	23	27999046	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	233042	27999046	127271514	2251	154661											
MAGEB16	139604	broad.mit.edu	37	chrX	35821107	35821107	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacctggagtaccagcaggTggccaacagtgatcctgcac	12	12	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35821107	A	A	35821107	3	1	191	1	0	0	0	0	1	0	0	0	9266	1696	59	5	796	5	MAGEB16	23	35821107	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	7822061	35821107	119449453	2252	154662											
USP9X	8239	broad.mit.edu	37	chrX	41000658	41000658	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggtaatcctgaggaggaaGagtggctcacagctgaacga	14	7	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41000658	C	C	41000658	3	2	191	1	0	0	0	0	1	0	0	0	17217	943	33	4	1165	4	USP9X	23	41000658	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	5179551	41000658	114269902	2253	154663											
NYX	60506	broad.mit.edu	37	chrX	41331555	41331555	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcactacatcggagcaGcgcctctgcttgcacaccta	8	14	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41331555	A	A	41331555	1	1	191	0	1	0	0	0	0	0	0	0	10892	986	34	4		4	NYX	23	41331555	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	330897	41331555	113939005	2254	154664											
UBA1	7317	broad.mit.edu	37	chrX	47062972	47062972	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccattggctgtgagctgctCaagaactttgccatgattgg	12	9	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47062972	G	G	47062972	2	3	191	1	0	0	0	0	0	0	0	1	16953	813	29	4		4	UBA1	23	47062972	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	5731417	47062972	108207588	2255	154665											
OTUD5	55593	broad.mit.edu	37	chrX	48783166	48783166	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctgtttctcctgatccCgcaaccactgcaggtaggat	10	13	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48783166	A	A	48783166	3	1	191	1	0	0	0	0	1	0	0	0	11409	652	23	1	496	1	OTUD5	23	48783166	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1720194	48783166	106487394	2256	154666											
KCND1	3750	broad.mit.edu	37	chrX	48820029	48820029	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccggctgtcgcagttcaggTcaaggctgtcatggggcttg	15	11	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48820029	A	A	48820029	3	1	191	1	0	0	0	0	1	0	0	0	8088	1667	58	5	190	5	KCND1	23	48820029	Missense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	36863	48820029	106450531	2257	154667											
CACNA1F	778	broad.mit.edu	37	chrX	49070747	49070747	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgcaggagaaaatcagGttgagatggagcctgaggca	16	6	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49070747	T	T	49070747	1	4	191	0	1	0	0	0	0	0	0	0	2569	1276	44	3		3	CACNA1F	23	49070747	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	250718	49070747	106199813	2258	154668											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	191	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-64-5781-01A-01D-1625-08	4582100	53652847	101617713	2259	154669											
TSR2	90121	broad.mit.edu	37	chrX	54467179	54467179	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggagaaggccaagtggctGgggggtgcagtggaggatta	20	5	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54467179	C	C	54467179	2	2	191	1	0	0	0	0	0	0	0	1	16790	1335	47	4		4	TSR2	23	54467179	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	814332	54467179	100803381	2260	154670											
ITIH5L	347365	broad.mit.edu	37	chrX	54783923	54783923	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtggaaatttggtgtgGtggggcactcggtttaagag	17	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54783923	A	A	54783923	3	1	191	1	0	0	0	0	1	0	0	0	7978	1261	44	4	1381	4	ITIH5L	23	54783923	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	316744	54783923	100486637	2261	154671											
ITIH5L	347365	broad.mit.edu	37	chrX	54784394	54784394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgtgctggaattttggCctttgggtatgtgggcattg	15	5	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54784394	A	A	54784394	3	1	191	1	0	0	0	0	1	0	0	0	7978	739	26	3	1852	3	ITIH5L	23	54784394	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	471	54784394	100486166	2262	154672											
PFKFB1	5207	broad.mit.edu	37	chrX	54975428	54975428	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taattaggctccccatagggGctggagcagaggcaacccag	13	11	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54975428	C	C	54975428	1	2	191	0	1	0	0	0	0	0	0	0	11855	1218	42	4		4	PFKFB1	23	54975428	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	191034	54975428	100295132	2263	154673											
KIAA2022	340533	broad.mit.edu	37	chrX	73963350	73963350	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccactcttagactctcGcttggggcaggtagtaaaga	12	11	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73963350	T	T	73963350	2	4	191	1	0	0	0	0	0	0	0	1	8339	1095	38	3		3	KIAA2022	23	73963350	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	18987922	73963350	81307210	2264	154674											
TBX22	50945	broad.mit.edu	37	chrX	79277918	79277918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggagagaaggagcagCgctgcagggaagagcgagcc	20	7	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79277918	A	A	79277918	3	1	191	1	0	0	0	0	1	0	0	0	15780	767	27	3	152	3	TBX22	23	79277918	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	5314568	79277918	75992642	2265	154675											
CYLC1	1538	broad.mit.edu	37	chrX	83128556	83128556	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaattattctttgaagtaTacaaagtatacaaagaagga	7	3	1	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83128556	A	A	83128556	4	1	191	1	0	0	0	0	0	1	0	0	4174	1413	49	5	854	5	CYLC1	23	83128556	Nonsense_Mutation	SNP	T	TCGA-64-5781-01A-01D-1625-08	3850638	83128556	72142004	2266	154676											
ZNF711	7552	broad.mit.edu	37	chrX	84525621	84525621	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatcctttaaaacagtctGaccaaatgtcacaactttct	3	10	3	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84525621	A	A	84525621	1	1	191	0	1	0	0	0	0	0	0	0	18244	1305	45	4		4	ZNF711	23	84525621	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	1397065	84525621	70744939	2267	154677											
CHM	1121	broad.mit.edu	37	chrX	85158494	85158494	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaagttatgatattagaaAgaactaatggagatcactca	7	5	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85158494	T	T	85158494	1	4	191	0	1	0	0	0	0	0	0	0	3381	87	3	5		5	CHM	23	85158494	Intron	SNP	A	TCGA-64-5781-01A-01D-1625-08	632873	85158494	70112066	2268	154678											
PABPC5	140886	broad.mit.edu	37	chrX	90691552	90691552	+	Frame_Shift_Del	DEL	G	-	-													aggaggaattttcttcctttGggtcaattagtcgggccaaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90691552	-	-	90691552	7	5	191	1	0	1	0	1	0	0	0	0	11461	1348	47	0	978	0	PABPC5	23	90691552	Frame_Shift_Del	DEL	G	TCGA-64-5781-01A-01D-1625-08	5533058	90691552	64579008	2269	154679											
PABPC5	140886	broad.mit.edu	37	chrX	90691715	90691715	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccctgggccaggccaggcGcaggtgctgagaataagaat	14	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90691715	C	C	90691715	3	2	191	1	0	0	0	0	1	0	0	0	11461	1087	38	4	1141	4	PABPC5	23	90691715	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	163	90691715	64578845	2270	154680											
FAM133A	286499	broad.mit.edu	37	chrX	92964820	92964820	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaaaaggagaaagaaaaaGaagaaccgttcatacaaatc	9	5	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92964820	T	T	92964820	3	4	191	1	0	0	0	0	1	0	0	0	5489	933	33	3	404	3	FAM133A	23	92964820	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	2273105	92964820	62305740	2271	154681											
ARL13A	392509	broad.mit.edu	37	chrX	100228626	100228626	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctcagtgtttataacagGacttacttcttattttcttt	6	7	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100228626	T	T	100228626	1	4	191	0	1	0	0	0	0	0	0	0	930	1189	41	3		3	ARL13A	23	100228626	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	7263806	100228626	55041934	2272	154682											
GLRA4	441509	broad.mit.edu	37	chrX	102974075	102974075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacgggcaggggcagcatcCatgttgatccagaaggagac	14	10	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102974075	A	A	102974075	3	1	191	1	0	0	0	0	1	0	0	0	6521	594	21	2	517	2	GLRA4	23	102974075	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	2745449	102974075	52296485	2273	154683											
COL4A5	1287	broad.mit.edu	37	chrX	107840539	107840539	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaaaatgttagaaaaaaaGaaactgattttctttttctc	5	4	2	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107840539	T	T	107840539	1	4	191	0	1	0	0	0	0	0	0	0	3726	957	33	3		3	COL4A5	23	107840539	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	4866464	107840539	47430021	2274	154684											
CHRDL1	91851	broad.mit.edu	37	chrX	109924659	109924659	+	Intron	DEL	C	-	-													attaaagtgagtcctctcatCcttttctgtgcccccttaca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109924659	-	-	109924659	6	5	191	0	1	1	0	1	0	0	0	0	3404	870	30	0		0	CHRDL1	23	109924659	Intron	DEL	C	TCGA-64-5781-01A-01D-1625-08	2084120	109924659	45345901	2275	154685											
CHRDL1	91851	broad.mit.edu	37	chrX	109964503	109964504	+	Intron	INS	-	T	T													ttatgatttaatgcaagtcaINStgttttattcaaacacctta							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109964504	T	T	109964503	6	5	191	0	1	1	1	0	0	0	0	0	3404	232	8	0		0	CHRDL1	23	109964503	Intron	INS	-	TCGA-64-5781-01A-01D-1625-08	39844	109964503	45306057	2276	154686											
PAK3	5063	broad.mit.edu	37	chrX	110366331	110366331	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattagttgtaactgaaAatgtctgacggtctggataa	10	4	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110366331	T	T	110366331	1	4	191	0	1	0	0	0	0	0	0	0	11496	29	1	5		5	PAK3	23	110366331	5'UTR	SNP	A	TCGA-64-5781-01A-01D-1625-08	401828	110366331	44904229	2277	154687											
CAPN6	827	broad.mit.edu	37	chrX	110494367	110494367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggaaaaaaataaagatgGtatttaatacttaacactgt	6	4	0	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110494367	A	A	110494367	1	1	191	0	1	0	0	0	0	0	0	0	2656	1276	44	4		4	CAPN6	23	110494367	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	128036	110494367	44776193	2278	154688											
DCX	1641	broad.mit.edu	37	chrX	110574341	110574341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatcagcctctggaaacCgcaataaccatcacaggcca	7	13	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110574341	A	A	110574341	1	1	191	0	1	0	0	0	0	0	0	0	4351	667	23	1		1	DCX	23	110574341	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	79974	110574341	44696219	2279	154689											
DCX	1641	broad.mit.edu	37	chrX	110576332	110576332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgaaatttttcaggaccaCaggcaataaacacatcatca	6	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110576332	A	A	110576332	3	1	191	1	0	0	0	0	1	0	0	0	4351	478	17	3	358	3	DCX	23	110576332	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1991	110576332	44694228	2280	154690											
ZCCHC16	340595	broad.mit.edu	37	chrX	111624591	111624591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagctaacaaaggtagagaCaagccttaaagaaaagatag	10	5	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111624591	A	A	111624591	1	1	191	0	1	0	0	0	0	0	0	0	17710	493	17	3		3	ZCCHC16	23	111624591	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1048259	111624591	43645969	2281	154691											
AMOT	154796	broad.mit.edu	37	chrX	112058742	112058742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcagaggatggctgagcCcgaggcatagctgaataggc	16	8	0	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112058742	A	A	112058742	2	1	191	1	0	0	0	0	0	0	0	1	582	610	22	2		2	AMOT	23	112058742	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	434151	112058742	43211818	2282	154692											
KLHL13	90293	broad.mit.edu	37	chrX	117043381	117043381	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgcatccatttattgtatcGaggatcaaatctgaagactg	8	7	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117043381	A	A	117043381	4	1	191	1	0	0	0	0	0	1	0	0	8440	1066	37	4	730	4	KLHL13	23	117043381	Nonsense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	4984639	117043381	38227179	2283	154693											
ZCCHC12	170261	broad.mit.edu	37	chrX	117960378	117960378	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggagaggtcaagagtgGcccctggcgaatacaatgac	14	8	1	4			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117960378	T	T	117960378	3	4	191	1	0	0	0	0	1	0	0	0	17707	1203	42	3	1173	3	ZCCHC12	23	117960378	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	916997	117960378	37310182	2284	154694											
RHOXF1	158800	broad.mit.edu	37	chrX	119249255	119249255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatccccctccacaccagCacaaaggcaggcaaggaccc	7	17	0	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119249255	A	A	119249255	1	1	191	0	1	0	0	0	0	0	0	0	13456	725	25	3		3	RHOXF1	23	119249255	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1288877	119249255	36021305	2285	154695											
CT47B1	643311	broad.mit.edu	37	chrX	120007678	120007678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgcaacaggtaaatgCcaggaatagttgactgattc	10	8	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120007678	A	A	120007678	1	1	191	0	1	0	0	0	0	0	0	0	4023	754	26	3		3	CT47B1	23	120007678	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	758423	120007678	35262882	2286	154696											
CT47B1	643311	broad.mit.edu	37	chrX	120008872	120008872	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgcggcctcctccgcgGgctccctggccatctcggcc	11	20	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120008872	T	T	120008872	3	4	191	1	0	0	0	0	1	0	0	0	4023	1232	43	2	254	2	CT47B1	23	120008872	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	1194	120008872	35261688	2287	154697											
CT47B1	643311	broad.mit.edu	37	chrX	120009270	120009270	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgtcgcgggcccgatatcTgagtcctcctcggcgctccc	11	18	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120009270	A	A	120009270	2	1	191	1	0	0	0	0	0	0	0	1	4023	1567	55	5		5	CT47B1	23	120009270	Silent	SNP	T	TCGA-64-5781-01A-01D-1625-08	398	120009270	35261290	2288	154698											
GRIA3	2892	broad.mit.edu	37	chrX	122460066	122460066	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacacaattttggaacaggTacgtttgagatttatttcac	7	6	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122460066	A	A	122460066	5	1	191	1	0	0	0	0	0	0	1	0	6835	1652	57	5	712	5	GRIA3	23	122460066	Splice_Site	SNP	T	TCGA-64-5781-01A-01D-1625-08	2450796	122460066	32810494	2289	154699											
ODZ1	10178	broad.mit.edu	37	chrX	123516702	123516702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagaaaatgaaaaatccCatactttataagctttgttg	5	5	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123516702	A	A	123516702	1	1	191	0	1	0	0	0	0	0	0	0	10929	609	21	2		2	ODZ1	23	123516702	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	1056636	123516702	31753858	2290	154700											
ODZ1	10178	broad.mit.edu	37	chrX	123663706	123663706	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaatgatcagaaacaacatTgacataccttccatcttgcc	4	12	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123663706	A	A	123663706	1	1	191	0	1	0	0	0	0	0	0	0	10929	1827	63	5		5	ODZ1	23	123663706	Intron	SNP	T	TCGA-64-5781-01A-01D-1625-08	147004	123663706	31606854	2291	154701											
IGSF1	3547	broad.mit.edu	37	chrX	130410272	130410272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacccagccctcacatcctGcaaatagccttttaaagtgt	5	13	1	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130410272	T	T	130410272	1	4	191	0	1	0	0	0	0	0	0	0	7666	1334	46	3		3	IGSF1	23	130410272	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	6746566	130410272	24860288	2292	154702											
USP26	83844	broad.mit.edu	37	chrX	132160979	132160979	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacccactggtgtcaggatCatcagcaaaaacctgtttag	8	10	3	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132160979	A	A	132160979	3	1	191	1	0	0	0	0	1	0	0	0	17183	826	29	3	1474	3	USP26	23	132160979	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1750707	132160979	23109581	2293	154703											
SAGE1	55511	broad.mit.edu	37	chrX	134987498	134987498	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtcaactgctccaccacAgcttgttcatatggctgcag	8	13	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134987498	C	C	134987498	3	2	191	1	0	0	0	0	1	0	0	0	13920	188	7	5	415	5	SAGE1	23	134987498	Missense_Mutation	SNP	A	TCGA-64-5781-01A-01D-1625-08	2826519	134987498	20283062	2294	154704											
GPR112	139378	broad.mit.edu	37	chrX	135429356	135429357	+	Missense_Mutation	DNP	CT	AA	AA													ctccactcatgtgatctcaaCtacgtctacaccagaagcaa							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	135429357	AA	AA	135429356	3	1	191	1	0	0	0	0	1	0	0	0	6694	565	20	3	3501	3	GPR112	23	135429356	Missense_Mutation	DNP	CT	TCGA-64-5781-01A-01D-1625-08	441858	135429356	19841204	2295	154705											
ZIC3	7547	broad.mit.edu	37	chrX	136649858	136649858	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgccccttcccgggctgcggGaagatctttgcccgttctga	12	14	2	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136649858	C	C	136649858	2	2	191	1	0	0	0	0	0	0	0	1	17806	1161	41	4		4	ZIC3	23	136649858	Silent	SNP	G	TCGA-64-5781-01A-01D-1625-08	1220502	136649858	18620702	2296	154706											
MCF2	4168	broad.mit.edu	37	chrX	138689785	138689785	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctaatcacattggccttGaacactgaaccagactccca	5	13	2	3			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138689785	A	A	138689785	1	1	191	0	1	0	0	0	0	0	0	0	9471	1305	45	4		4	MCF2	23	138689785	Intron	SNP	G	TCGA-64-5781-01A-01D-1625-08	2039927	138689785	16580775	2297	154707											
MAGEC2	51438	broad.mit.edu	37	chrX	141290631	141290631	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccctgttcaaacacaagGggaagaaactatcctagact	8	11	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141290631	C	C	141290631	1	2	191	0	1	0	0	0	0	0	0	0	9273	1247	43	4		4	MAGEC2	23	141290631	3'UTR	SNP	G	TCGA-64-5781-01A-01D-1625-08	2600846	141290631	13979929	2298	154708											
MAGEC2	51438	broad.mit.edu	37	chrX	141291417	141291417	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgcctgtatcctcccctttCtggctgctggactcctcact	8	16	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141291417	T	T	141291417	2	4	191	1	0	0	0	0	0	0	0	1	9273	912	32	4		4	MAGEC2	23	141291417	Silent	SNP	C	TCGA-64-5781-01A-01D-1625-08	786	141291417	13979143	2299	154709											
MAGEA11	4110	broad.mit.edu	37	chrX	148798282	148798282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgcccggcactgatcCtgcatgctatgagttcctgt	12	12	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148798282	A	A	148798282	3	1	191	1	0	0	0	0	1	0	0	0	9253	681	24	2	1163	2	MAGEA11	23	148798282	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	7506865	148798282	6472278	2300	154710											
GPR50	9248	broad.mit.edu	37	chrX	150349713	150349713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccctgccattgcccaccCtgtgtctgacgacagtgacc	9	16	1	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150349713	A	A	150349713	3	1	191	1	0	0	0	0	1	0	0	0	6762	681	24	2	1664	2	GPR50	23	150349713	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	1551431	150349713	4920847	2301	154711											
GABRE	2564	broad.mit.edu	37	chrX	151130895	151130895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccagaggcttgacatacCtaattgtgtacaacaccttg	7	11	0	2			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151130895	A	A	151130895	3	1	191	1	0	0	0	0	1	0	0	0	6230	695	24	2	981	2	GABRE	23	151130895	Missense_Mutation	SNP	C	TCGA-64-5781-01A-01D-1625-08	781182	151130895	4139665	2302	154712											
GABRQ	55879	broad.mit.edu	37	chrX	151809026	151809026	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgaccagtggtatcctgCgggctctacacctgtgcctc	11	14	1	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151809026	A	A	151809026	1	1	191	0	1	0	0	0	0	0	0	0	6235	783	27	3		3	GABRQ	23	151809026	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	678131	151809026	3461534	2303	154713											
BGN	633	broad.mit.edu	37	chrX	152772618	152772618	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggccagggtgccctcagGgctcccagacctcaagctcc	12	16	2	1			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152772618	C	C	152772618	3	2	191	1	0	0	0	0	1	0	0	0	1424	1232	43	4	906	4	BGN	23	152772618	Missense_Mutation	SNP	G	TCGA-64-5781-01A-01D-1625-08	963592	152772618	2497942	2304	154714											
L1CAM	3897	broad.mit.edu	37	chrX	153129776	153129777	+	Splice_Site	DNP	CC	AT	AT													ggcgggcccccggcgcctcaCctgtgccattggtcttcaca							TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	153129777	AT	AT	153129776	5	1	191	1	0	0	0	0	0	0	1	0	8660	521	18	3	470	3	L1CAM	23	153129776	Splice_Site	DNP	CC	TCGA-64-5781-01A-01D-1625-08	357158	153129776	2140784	2305	154715											
NAA10	8260	broad.mit.edu	37	chrX	153197676	153197676	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttccccccaatcccacttCctggatcttcaccaaaagct	3	19	2	0			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153197676	T	T	153197676	1	4	191	0	1	0	0	0	0	0	0	0	10210	870	30	4		4	NAA10	23	153197676	Intron	SNP	C	TCGA-64-5781-01A-01D-1625-08	67900	153197676	2072884	2306	154716											
VPS13D	55187	broad.mit.edu	37	chr1	12343685	12343685	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctccactgcagacaaccaCgcaatgaggctgcctcctga	10	15	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12343685	G	G	12343685	3	3	192	1	0	0	0	0	1	0	0	0	17319	535	19	4	5604	4	VPS13D	1	12343685	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08		12343685	236906936	1	154717											
MACF1	23499	broad.mit.edu	37	chr1	39696654	39696654	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaggcacgtggtgattcTgtctgatttgtaaactgaca	11	6	2	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39696654	C	C	39696654	1	2	192	0	1	0	0	0	0	0	0	0	9232	1595	55	5		5	MACF1	1	39696654	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	27352969	39696654	209553967	2	154718											
KCNQ4	9132	broad.mit.edu	37	chr1	41284241	41284241	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccagggcaacatcttcgcCacgtccgcgctgcgcagcat	10	17	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41284241	T	T	41284241	2	4	192	1	0	0	0	0	0	0	0	1	8155	581	21	4		4	KCNQ4	1	41284241	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	1587587	41284241	207966380	3	154719											
FAAH	2166	broad.mit.edu	37	chr1	46874210	46874210	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctccccggccatgaggcGggccgtgctggagaccaaac	14	16	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46874210	A	A	46874210	3	1	192	1	0	0	0	0	1	0	0	0	5399	1116	39	4	1061	4	FAAH	1	46874210	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	5589969	46874210	202376411	4	154720											
C1orf141	400757	broad.mit.edu	37	chr1	67559199	67559199	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttttcattttccaaaGgatgagaagaaaatctattt	6	4	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67559199	T	T	67559199	3	4	192	1	0	0	0	0	1	0	0	0	2021	1000	35	2	514	2	C1orf141	1	67559199	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	20684989	67559199	181691422	5	154721											
GNG12	55970	broad.mit.edu	37	chr1	68173405	68173405	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgaaatctgaggagaAttttttttaaagacaagtaa	7	4	1	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68173405	T	T	68173405	1	4	192	0	1	0	0	0	0	0	0	0	6589	116	4	5		5	GNG12	1	68173405	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	614206	68173405	181077216	6	154722											
BRDT	676	broad.mit.edu	37	chr1	92470776	92470776	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcagcagtcatcagaagctCaagataaatccaaactctgg	7	10	5	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92470776	A	A	92470776	3	1	192	1	0	0	0	0	1	0	0	0	1517	827	29	3	2761	3	BRDT	1	92470776	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	24297371	92470776	156779845	7	154723											
ABCD3	5825	broad.mit.edu	37	chr1	94933552	94933552	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggatgattcaaaatgggacActaattgaaaggtacttttt	9	4	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94933552	T	T	94933552	2	4	192	1	0	0	0	0	0	0	0	1	62	146	6	5		5	ABCD3	1	94933552	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	2462776	94933552	154317069	8	154724											
DENND2D	79961	broad.mit.edu	37	chr1	111731363	111731363	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccaagagagtctaagaTgtcatcctgaagcttcggtg	11	9	2	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111731363	A	A	111731363	3	1	192	1	0	0	0	0	1	0	0	0	4471	1464	51	5	367	5	DENND2D	1	111731363	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	16797811	111731363	137519258	9	154725											
PPM1J	333926	broad.mit.edu	37	chr1	113253577	113253577	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagaacctccacctccctaGacaagttgtgataggtcctc	8	13	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113253577	T	T	113253577	1	4	192	0	1	0	0	0	0	0	0	0	12443	957	33	3		3	PPM1J	1	113253577	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	1522214	113253577	135997044	10	154726											
CASQ2	845	broad.mit.edu	37	chr1	116243867	116243867	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtttggagttgggctattCatcatcatcgtcatcactgt	9	8	5	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116243867	A	A	116243867	4	1	192	1	0	0	0	0	0	1	0	0	2707	835	29	3	8	3	CASQ2	1	116243867	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	2990290	116243867	133006754	11	154727											
NBPF14	25832	broad.mit.edu	37	chr1	148012569	148012569	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaacttccatagggctGgcaggagtcaggctgttcaa	13	8	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148012569	A	A	148012569	4	1	192	1	0	0	0	0	0	1	0	0	10289	1357	47	4	1419	4	NBPF14	1	148012569	Nonsense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	31768702	148012569	101238052	12	154728											
TTC24	164118	broad.mit.edu	37	chr1	156552882	156552882	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggagctttggcagcctggCctttgcattgagccagctgg	14	12	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156552882	T	T	156552882	3	4	192	1	0	0	0	0	1	0	0	0	16818	739	26	4	969	4	TTC24	1	156552882	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	8540313	156552882	92697739	13	154729											
SPTA1	6708	broad.mit.edu	37	chr1	158626337	158626337	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaagtgtgaatcctgtcatCgctaagttagtcttacctgg	11	8	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158626337	T	T	158626337	1	4	192	0	1	0	0	0	0	0	0	0	15234	899	31	4		4	SPTA1	1	158626337	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	2073455	158626337	90624284	14	154730											
ATP1A2	477	broad.mit.edu	37	chr1	160106081	160106081	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggcagctgagagtgatatCatgaagcggcagccacgaaa	14	8	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160106081	G	G	160106081	3	3	192	1	0	0	0	0	1	0	0	0	1133	816	29	4	2554	4	ATP1A2	1	160106081	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	1479744	160106081	89144540	15	154731											
ATP1A4	480	broad.mit.edu	37	chr1	160147224	160147224	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcccagccagaagcaagtCccagcccccagccctcccct	7	22	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160147224	A	A	160147224	1	1	192	0	1	0	0	0	0	0	0	0	1135	870	30	3		3	ATP1A4	1	160147224	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	41143	160147224	89103397	16	154732											
LY9	4063	broad.mit.edu	37	chr1	160793673	160793673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactagttcctccaaactggGggctggggcctggaaacagg	15	10	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160793673	T	T	160793673	1	4	192	0	1	0	0	0	0	0	0	0	9189	1247	43	2		2	LY9	1	160793673	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	646449	160793673	88456948	17	154733											
HSPA6	3310	broad.mit.edu	37	chr1	161495342	161495342	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtggacttctacacgtcCatcactcgtgcccgctttga	10	14	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161495342	T	T	161495342	2	4	192	1	0	0	0	0	0	0	0	1	7484	581	21	4		4	HSPA6	1	161495342	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	701669	161495342	87755279	18	154734											
C1orf111	284680	broad.mit.edu	37	chr1	162344976	162344976	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcaggtgacaagaccgcGcatgggggtccagcttccag	15	12	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162344976	T	T	162344976	1	4	192	0	1	0	0	0	0	0	0	0	2004	1102	38	3		3	C1orf111	1	162344976	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	849634	162344976	86905645	19	154735											
RXRG	6258	broad.mit.edu	37	chr1	165397965	165397965	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacacttacctgagagctGggtggggcaaccaagttgat	13	8	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165397965	T	T	165397965	2	4	192	1	0	0	0	0	0	0	0	1	13876	1335	47	2		2	RXRG	1	165397965	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	3052989	165397965	83852656	20	154736											
TNR	7143	broad.mit.edu	37	chr1	175355195	175355195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaactgagtggtggcagaatCgctctcgttggtccctcgga	14	10	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175355195	A	A	175355195	3	1	192	1	0	0	0	0	1	0	0	0	16461	884	31	3	2390	3	TNR	1	175355195	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	9957230	175355195	73895426	21	154737											
PAPPA2	60676	broad.mit.edu	37	chr1	176659389	176659389	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaaggagtcagtgaaagaGaatcctgcaatgacccctgc	10	9	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176659389	C	C	176659389	3	2	192	1	0	0	0	0	1	0	0	0	11527	943	33	4	2268	4	PAPPA2	1	176659389	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	1304194	176659389	72591232	22	154738											
FAM5B	57795	broad.mit.edu	37	chr1	177247895	177247895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagcgctgccatcgccaGcctcgcttccgcctgcccaa	9	19	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177247895	T	T	177247895	3	4	192	1	0	0	0	0	1	0	0	0	5644	962	34	3	1231	3	FAM5B	1	177247895	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	588506	177247895	72002726	23	154739											
RASAL2	9462	broad.mit.edu	37	chr1	178359131	178359131	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagaatgtaatatacctttAaagcatgctggtttattgtg	8	4	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178359131	T	T	178359131	1	4	192	0	1	0	0	0	0	0	0	0	13172	377	13	5		5	RASAL2	1	178359131	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	1111236	178359131	70891490	24	154740											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179833904	179833904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagacttgacaattttgaCtattatagaagctatttgtt	6	5	1	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179833904	A	A	179833904	1	1	192	0	1	0	0	0	0	0	0	0	16497	580	20	3		3	TOR1AIP2	1	179833904	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	1474773	179833904	69416717	25	154741											
KIF21B	23046	broad.mit.edu	37	chr1	200950034	200950034	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccactctgacaaaggaaGcaggggtgagtaggagaccc	14	9	1	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200950034	A	A	200950034	1	1	192	0	1	0	0	0	0	0	0	0	8359	986	34	4		4	KIF21B	1	200950034	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	21116130	200950034	48300587	26	154742											
CACNA1S	779	broad.mit.edu	37	chr1	201021667	201021667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcggggtaggggtggggGtggcgggagacgcgtgcctg	24	7	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201021667	T	T	201021667	1	4	192	0	1	0	0	0	0	0	0	0	2573	1276	44	3		3	CACNA1S	1	201021667	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	71633	201021667	48228954	27	154743											
PTPN14	5784	broad.mit.edu	37	chr1	214638034	214638034	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttgccctgtgctttccaccGacagcgtgcactcgataaca	8	15	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	214638034	C	C	214638034	3	2	192	1	0	0	0	0	1	0	0	0	12889	1059	37	4	3522	4	PTPN14	1	214638034	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	13616367	214638034	34612587	28	154744											
USH2A	7399	broad.mit.edu	37	chr1	216246404	216246404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagggggatgaataagagaCatgtaacatttaatttagag	11	2	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216246404	A	A	216246404	1	1	192	0	1	0	0	0	0	0	0	0	17162	493	17	3		3	USH2A	1	216246404	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	1608370	216246404	33004217	29	154745											
OBSCN	84033	broad.mit.edu	37	chr1	228556723	228556723	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctactggtcagccaaggggtCctccctgaacctgtctcctc	9	16	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228556723	A	A	228556723	1	1	192	0	1	0	0	0	0	0	0	0	10907	870	30	3		3	OBSCN	1	228556723	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	12310319	228556723	20693898	30	154746											
PGBD5	79605	broad.mit.edu	37	chr1	230459045	230459045	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgtccctccagaggccCtgtgcatccctcccaggcag	9	18	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230459045	A	A	230459045	1	1	192	0	1	0	0	0	0	0	0	0	11879	696	24	2		2	PGBD5	1	230459045	3'UTR	SNP	C	TCGA-64-5815-01A-01D-1625-08	1902322	230459045	18791576	31	154747											
TRIM67	440730	broad.mit.edu	37	chr1	231334738	231334738	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcactcaccagattttagCatcttccccctaaaactctt	3	14	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231334738	A	A	231334738	1	1	192	0	1	0	0	0	0	0	0	0	16665	725	25	3		3	TRIM67	1	231334738	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	875693	231334738	17915883	32	154748											
FMN2	56776	broad.mit.edu	37	chr1	240370528	240370528	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagccatcagcccacacagAgcatctcacagcctccacca	5	19	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240370528	T	T	240370528	3	4	192	1	0	0	0	0	1	0	0	0	6008	304	11	5	2434	5	FMN2	1	240370528	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	9035790	240370528	8880093	33	154749											
SDCCAG8	10806	broad.mit.edu	37	chr1	243504503	243504503	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagattttagtgtaatcgTtacttaaggaaatatttcct	7	4	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243504503	A	A	243504503	1	1	192	0	1	0	0	0	0	0	0	0	14072	1740	60	5		5	SDCCAG8	1	243504503	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	3133975	243504503	5746118	34	154750											
SCCPDH	51097	broad.mit.edu	37	chr1	246930495	246930495	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttgttattgttttatAggggcggggtcttcacacct	10	8	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	246930495	G	G	246930495	5	3	192	1	0	0	0	0	0	0	1	0	13997	434	15	5	1229	5	SCCPDH	1	246930495	Splice_Site	SNP	A	TCGA-64-5815-01A-01D-1625-08	3425992	246930495	2320126	35	154751											
OR14A16	284532	broad.mit.edu	37	chr1	247978955	247978955	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatcaacaagaagagaatcGaatgcaaaatgcacatattt	6	6	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978955	A	A	247978955	3	1	192	1	0	0	0	0	1	0	0	0	11039	1059	37	4	856	4	OR14A16	1	247978955	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	1048460	247978955	1271666	36	154752											
TRIM58	25893	broad.mit.edu	37	chr1	248027993	248027993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcactgacgatgtgatccaCggtgtcacctcaggagaaag	12	10	2	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248027993	A	A	248027993	1	1	192	0	1	0	0	0	0	0	0	0	16656	551	19	3		3	TRIM58	1	248027993	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	49038	248027993	1222628	37	154753											
OR2AK2	391191	broad.mit.edu	37	chr1	248129110	248129110	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagatctgctgcctcatGgttgcatgtgcatgggccag	13	9	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248129110	T	T	248129110	3	4	192	1	0	0	0	0	1	0	0	0	11080	1348	47	2	479	2	OR2AK2	1	248129110	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	101117	248129110	1121511	38	154754											
OR2L13	284521	broad.mit.edu	37	chr1	248263034	248263034	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgacctccatggcctaCgaccgttatttggccatctg	8	15	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248263034	T	T	248263034	2	4	192	1	0	0	0	0	0	0	0	1	11100	547	19	4		4	OR2L13	1	248263034	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	133924	248263034	987587	39	154755											
OR2T34	127068	broad.mit.edu	37	chr1	248737762	248737762	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctggatcccacagcctgaCggggaaatggtatcatctcc	10	12	3	1	rs144472277	byFrequency	TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248737762	T	T	248737762	2	4	192	1	0	0	0	0	0	0	0	1	11119	523	19	4		4	OR2T34	1	248737762	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	474728	248737762	512859	40	154756											
ITSN2	50618	broad.mit.edu	37	chr2	24518416	24518416	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgaactcctgacctcagggGatccacccgcctcagcctcc	8	19	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24518416	T	T	24518416	1	4	192	0	1	0	0	0	0	0	0	0	7997	1189	41	3		3	ITSN2	2	24518416	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08		24518416	218680957	41	154757											
SOS1	6654	broad.mit.edu	37	chr2	39222532	39222532	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagctatatttttttggctgTagacatatcaaaagaaacac	6	6	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39222532	A	A	39222532	1	1	192	0	1	0	0	0	0	0	0	0	15050	1653	57	5		5	SOS1	2	39222532	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	14704116	39222532	203976841	42	154758											
LRPPRC	10128	broad.mit.edu	37	chr2	44184467	44184467	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatgcaataagtcaaaAggacaggagaaatcagtcca	8	9	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44184467	T	T	44184467	1	4	192	0	1	0	0	0	0	0	0	0	9052	87	3	5		5	LRPPRC	2	44184467	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	4961935	44184467	199014906	43	154759											
MSH6	2956	broad.mit.edu	37	chr2	48027461	48027461	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaaagcaatggctttgtgCcccactctgtaaccattatg	7	12	1	0	rs63749899		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48027461	T	T	48027461	3	4	192	1	0	0	0	0	1	0	0	0	9968	739	26	4	2353	4	MSH6	2	48027461	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	3842994	48027461	195171912	44	154760											
MSH6	2956	broad.mit.edu	37	chr2	48033416	48033416	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacttgctgagactataaaAtgtcgtacattattttcaac	6	7	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48033416	G	G	48033416	2	3	192	1	0	0	0	0	0	0	0	1	9968	98	4	5		5	MSH6	2	48033416	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	5955	48033416	195165957	45	154761											
BCL11A	53335	broad.mit.edu	37	chr2	60689438	60689438	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcggggtcaggggacttccGtgttcgctttctaagtagat	14	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60689438	A	A	60689438	2	1	192	1	0	0	0	0	0	0	0	1	1368	1136	40	4		4	BCL11A	2	60689438	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	12656022	60689438	182509935	46	154762											
DYSF	8291	broad.mit.edu	37	chr2	71828051	71828051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctgtgggagcctggaaCacctcctctgaagccaggcc	11	16	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71828051	A	A	71828051	1	1	192	0	1	0	0	0	0	0	0	0	4899	493	17	3		3	DYSF	2	71828051	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	11138613	71828051	171371322	47	154763											
DYSF	8291	broad.mit.edu	37	chr2	71840447	71840447	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccctctcaggcctggatGgctccctcccctgcagacga	10	18	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71840447	A	A	71840447	1	1	192	0	1	0	0	0	0	0	0	0	4899	1363	47	4		4	DYSF	2	71840447	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	12396	71840447	171358926	48	154764											
CCDC142	84865	broad.mit.edu	37	chr2	74708198	74708198	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagggtacagagacctaggGcgacaggcgcaggatctggg	18	8	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74708198	A	A	74708198	3	1	192	1	0	0	0	0	1	0	0	0	2802	1218	42	4		4	CCDC142	2	74708198	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	2867751	74708198	168491175	49	154765											
REEP1	65055	broad.mit.edu	37	chr2	86509379	86509379	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tataagcctggagggaagagAgacaaaaataaatacgattt	10	4	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86509379	T	T	86509379	1	4	192	0	1	0	0	0	0	0	0	0	13312	319	11	5		5	REEP1	2	86509379	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	11801181	86509379	156689994	50	154766											
IL1F9	56300	broad.mit.edu	37	chr2	113742407	113742407	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctaatgggtacttgttctGacatttcaggagcagaagat	10	7	2	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113742407	T	T	113742407	1	4	192	0	1	0	0	0	0	0	0	0	7727	1305	45	3		3	IL1F9	2	113742407	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	27233028	113742407	129456966	51	154767											
MARCO	8685	broad.mit.edu	37	chr2	119739854	119739854	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcctgggtcctatggtgGgcacagggagtgatgtgtga	18	6	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119739854	A	A	119739854	1	1	192	0	1	0	0	0	0	0	0	0	9403	1247	43	4		4	MARCO	2	119739854	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	5997447	119739854	123459519	52	154768											
MYO7B	4648	broad.mit.edu	37	chr2	128384547	128384547	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacatccaggatcccccctCaggccccatacactcagaag	7	17	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128384547	G	G	128384547	1	3	192	0	1	0	0	0	0	0	0	0	10177	841	29	4		4	MYO7B	2	128384547	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	8644693	128384547	114814826	53	154769											
POLR2D	5433	broad.mit.edu	37	chr2	128610695	128610696	+	Intron	INS	-	T	T													aactctatttgtaagaagcaINStaaatggcagctgaaaatac							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128610696	T	T	128610695	6	5	192	0	1	1	1	0	0	0	0	0	12312	232	8	0		0	POLR2D	2	128610695	Intron	INS	-	TCGA-64-5815-01A-01D-1625-08	226148	128610695	114588678	54	154770											
TUBA3D	113457	broad.mit.edu	37	chr2	132240477	132240477	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggatggctgcttccaagttGtttgcaattaaaggttctgt	12	6	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132240477	C	C	132240477	1	2	192	0	1	0	0	0	0	0	0	0	16873	1392	48	4		4	TUBA3D	2	132240477	3'UTR	SNP	G	TCGA-64-5815-01A-01D-1625-08	3629782	132240477	110958896	55	154771											
LRP1B	53353	broad.mit.edu	37	chr2	141250138	141250138	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaacacatacctagtgcaCatgttaaatgttacggtgtc	7	9	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141250138	G	G	141250138	1	3	192	0	1	0	0	0	0	0	0	0	9042	493	17	4		4	LRP1B	2	141250138	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	9009661	141250138	101949235	56	154772											
ZEB2	9839	broad.mit.edu	37	chr2	145157069	145157069	+	Frame_Shift_Del	DEL	A	-	-													catcagtgaccaaatctattAaagtacgtagcttctctttc							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145157069	-	-	145157069	7	5	192	1	0	1	0	1	0	0	0	0	17750	372	13	0	1971	0	ZEB2	2	145157069	Frame_Shift_Del	DEL	A	TCGA-64-5815-01A-01D-1625-08	3906931	145157069	98042304	57	154773											
XIRP2	129446	broad.mit.edu	37	chr2	168102285	168102286	+	Missense_Mutation	DNP	GG	TT	TT													ctatttgaaacccacactatGgatgaactgagaggagaagg							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	168102286	TT	TT	168102285	3	4	192	1	0	0	0	0	1	0	0	0	17557	1348	47	2	4413	2	XIRP2	2	168102285	Missense_Mutation	DNP	GG	TCGA-64-5815-01A-01D-1625-08	22945216	168102285	75097088	58	154774											
HECW2	57520	broad.mit.edu	37	chr2	197297866	197297866	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgactcacctatatgataAagtccaatccaatcactggg	6	11	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197297866	C	C	197297866	2	2	192	1	0	0	0	0	0	0	0	1	7110	1	1	5		5	HECW2	2	197297866	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	29195581	197297866	45901507	59	154775											
SATB2	23314	broad.mit.edu	37	chr2	200245208	200245208	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtcttccaactttgaaCaactgcaaaacagagcaata	6	10	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200245208	A	A	200245208	3	1	192	1	0	0	0	0	1	0	0	0	13966	478	17	3	1753	3	SATB2	2	200245208	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	2947342	200245208	42954165	60	154776											
TRAK2	66008	broad.mit.edu	37	chr2	202254675	202254675	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtctctacaatcctataCttttggttttataataaaat	4	6	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202254675	A	A	202254675	1	1	192	0	1	0	0	0	0	0	0	0	16574	580	20	3		3	TRAK2	2	202254675	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	2009467	202254675	40944698	61	154777											
VIL1	7429	broad.mit.edu	37	chr2	219299217	219299217	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttactaagtgactcctgacTctctctccctgtcttctgcc	5	15	4	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219299217	A	A	219299217	1	1	192	0	1	0	0	0	0	0	0	0	17291	1566	54	5		5	VIL1	2	219299217	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	17044542	219299217	23900156	62	154778											
PRKAG3	53632	broad.mit.edu	37	chr2	219689061	219689061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcccacactcatgtccaGgtggttgtaggtttgctggg	12	10	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219689061	T	T	219689061	3	4	192	1	0	0	0	0	1	0	0	0	12608	991	35	2	240	2	PRKAG3	2	219689061	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	389844	219689061	23510312	63	154779											
FARSB	10056	broad.mit.edu	37	chr2	223512025	223512025	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcggaggtcagccagggcTgtcacaaattctacggagcc	13	12	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223512025	C	C	223512025	1	2	192	0	1	0	0	0	0	0	0	0	5737	1595	55	5		5	FARSB	2	223512025	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	3822964	223512025	19687348	64	154780											
DNER	92737	broad.mit.edu	37	chr2	230231656	230231656	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgcggcagttgtagaactCctcataggctggcctggaag	14	10	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230231656	A	A	230231656	4	1	192	1	0	0	0	0	0	1	0	0	4707	864	30	3	186	3	DNER	2	230231656	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	6719631	230231656	12967717	65	154781											
PSMD1	5707	broad.mit.edu	37	chr2	231925941	231925941	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttaatttccactttagtgaGaatgtgtttcataatcatgt	7	5	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231925941	C	C	231925941	1	2	192	0	1	0	0	0	0	0	0	0	12798	957	33	4		4	PSMD1	2	231925941	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	1694285	231925941	11273432	66	154782											
CHRNG	1146	broad.mit.edu	37	chr2	233405017	233405017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgggggatgcttggcCccattggtggcctgtgggga	20	8	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233405017	A	A	233405017	1	1	192	0	1	0	0	0	0	0	0	0	3427	638	22	2		2	CHRNG	2	233405017	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	1479076	233405017	9794356	67	154783											
INPP5D	3635	broad.mit.edu	37	chr2	233925275	233925275	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcaaggacgggagcttcctCgtgcgtgccagcgagtccat	15	12	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233925275	A	A	233925275	2	1	192	1	0	0	0	0	0	0	0	1	7826	871	31	3		3	INPP5D	2	233925275	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	520258	233925275	9274098	68	154784											
AQP12B	653437	broad.mit.edu	37	chr2	241621967	241621967	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggaactcctgcagggaCacggtggggttggccgaggc	18	9	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241621967	A	A	241621967	2	1	192	1	0	0	0	0	0	0	0	1	827	465	17	3		3	AQP12B	2	241621967	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	7696692	241621967	1577406	69	154785											
KIF1A	547	broad.mit.edu	37	chr2	241722603	241722603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggagggatgccctgggtGgacctgtgcagtgtggagtg	19	7	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241722603	T	T	241722603	1	4	192	0	1	0	0	0	0	0	0	0	8353	1363	47	2		2	KIF1A	2	241722603	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	100636	241722603	1476770	70	154786											
ANO7	50636	broad.mit.edu	37	chr2	242149716	242149716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcccccgcaggtggccGtggtggtcatgtgcctcgtg	15	15	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242149716	T	T	242149716	3	4	192	1	0	0	0	0	1	0	0	0	702	1145	40	3	1654	3	ANO7	2	242149716	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	427113	242149716	1049657	71	154787											
CHL1	10752	broad.mit.edu	37	chr3	370104	370104	+	Intron	DEL	G	-	-													tgttaaataggagttagattGggttccaatgaaataaagca							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	370104	-	-	370104	6	5	192	0	1	1	0	1	0	0	0	0	3380	1363	47	0		0	CHL1	3	370104	Intron	DEL	G	TCGA-64-5815-01A-01D-1625-08		370104	197652326	72	154788											
METTL6	131965	broad.mit.edu	37	chr3	15455719	15455719	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggagaaccctgtcaaaaTaaaacctgattaagttagga	8	6	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15455719	C	C	15455719	1	2	192	0	1	0	0	0	0	0	0	0	9597	1421	49	5		5	METTL6	3	15455719	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	15085615	15455719	182566711	73	154789											
KCNH8	131096	broad.mit.edu	37	chr3	19479843	19479843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttctccatctgcaccatGctgattggtggtaagagagc	10	10	3	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19479843	T	T	19479843	3	4	192	1	0	0	0	0	1	0	0	0	8108	1319	46	3	1395	3	KCNH8	3	19479843	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	4024124	19479843	178542587	74	154790											
VILL	50853	broad.mit.edu	37	chr3	38048333	38048333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgggcaaacagatgcGggagtcccaagccctggatg	17	9	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38048333	T	T	38048333	1	4	192	0	1	0	0	0	0	0	0	0	17292	1131	39	1		1	VILL	3	38048333	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	18568490	38048333	159974097	75	154791											
SCN5A	6331	broad.mit.edu	37	chr3	38595835	38595835	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttggtgaagtagtagtggCgcagggcagccagcttgaca	16	7	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38595835	G	G	38595835	3	3	192	1	0	0	0	0	1	0	0	0	14035	768	27	4	1310	4	SCN5A	3	38595835	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	547502	38595835	159426595	76	154792											
COL7A1	1294	broad.mit.edu	37	chr3	48604563	48604563	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatggcttcaactcacccGctcccctttctcgccctggt	6	19	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48604563	T	T	48604563	2	4	192	1	0	0	0	0	0	0	0	1	3736	1086	38	3		3	COL7A1	3	48604563	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	10008728	48604563	149417867	77	154793											
GPR128	84873	broad.mit.edu	37	chr3	100373949	100373949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcactcagcgctgcacaGctctattaccttctaataag	6	13	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100373949	T	T	100373949	3	4	192	1	0	0	0	0	1	0	0	0	6706	962	34	3	1696	3	GPR128	3	100373949	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	51769386	100373949	97648481	78	154794											
IMPG2	50939	broad.mit.edu	37	chr3	100961629	100961629	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcatgtacaccgcattgttGacgttaggagggacagaatt	11	7	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100961629	A	A	100961629	2	1	192	1	0	0	0	0	0	0	0	1	7799	1277	45	4		4	IMPG2	3	100961629	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	587680	100961629	97060801	79	154795											
POLQ	10721	broad.mit.edu	37	chr3	121207346	121207346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcaaacttgtttcaggaaCtggaagacattctccttcta	6	9	4	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121207346	A	A	121207346	3	1	192	1	0	0	0	0	1	0	0	0	12303	565	20	3	3400	3	POLQ	3	121207346	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	20245717	121207346	76815084	80	154796											
CASR	846	broad.mit.edu	37	chr3	121981079	121981079	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccctctgtacaggggatgaGaacatcagcagtgtcgagac	12	11	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121981079	C	C	121981079	3	2	192	1	0	0	0	0	1	0	0	0	2708	933	33	4	1207	4	CASR	3	121981079	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	773733	121981079	76041351	81	154797											
EEFSEC	60678	broad.mit.edu	37	chr3	128060612	128060612	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggacattcacaccaacacGtgccggctagccttccatgg	10	15	1	0	rs143447496		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128060612	A	A	128060612	2	1	192	1	0	0	0	0	0	0	0	1	4971	1132	40	4		4	EEFSEC	3	128060612	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	6079533	128060612	69961818	82	154798											
ZIC4	84107	broad.mit.edu	37	chr3	147108811	147108811	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgagggcgacacgagggcaGacggtgtagccgaatcgtag	17	9	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147108811	T	T	147108811	3	4	192	1	0	0	0	0	1	0	0	0	17807	942	33	3	101	3	ZIC4	3	147108811	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	19048199	147108811	50913619	83	154799											
IGSF10	285313	broad.mit.edu	37	chr3	151171189	151171189	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctggcttctcctgtatcCagtcagacaaccactttaaa	5	13	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151171189	A	A	151171189	3	1	192	1	0	0	0	0	1	0	0	0	7667	595	21	2	7237	2	IGSF10	3	151171189	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	4062378	151171189	46851241	84	154800											
BCHE	590	broad.mit.edu	37	chr3	165548045	165548045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataaagagatgttaccgcCcaaggagcattaaaggatcc	9	9	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165548045	A	A	165548045	3	1	192	1	0	0	0	0	1	0	0	0	1363	624	22	2	1043	2	BCHE	3	165548045	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	14376856	165548045	32474385	85	154801											
RPL22L1	200916	broad.mit.edu	37	chr3	170588031	170588032	+	5'UTR	INS	-	A	A													atatcaaagcgtgctgcgtcINSacgcgctgagagcgtcagat							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170588032	A	A	170588031	6	5	192	0	1	1	1	0	0	0	0	0	13680	841	29	0		0	RPL22L1	3	170588031	5'UTR	INS	-	TCGA-64-5815-01A-01D-1625-08	5039986	170588031	27434399	86	154802											
SPATA16	83893	broad.mit.edu	37	chr3	172835364	172835364	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgatttctacctgtttaCctccacagtttttcttaatc	5	10	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172835364	A	A	172835364	3	1	192	1	0	0	0	0	1	0	0	0	15117	507	18	3	1591	3	SPATA16	3	172835364	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	2247333	172835364	25187066	87	154803											
HTR3C	170572	broad.mit.edu	37	chr3	183776385	183776385	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgttttatgtgagtccaGgggcccctgtttgacttctg	11	9	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183776385	A	A	183776385	1	1	192	0	1	0	0	0	0	0	0	0	7516	1015	35	4		4	HTR3C	3	183776385	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	10941021	183776385	14246045	88	154804											
SENP5	205564	broad.mit.edu	37	chr3	196612677	196612677	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggagcaccacaggaatGggggacccttgattccaaaa	13	11	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196612677	T	T	196612677	3	4	192	1	0	0	0	0	1	0	0	0	14162	1348	47	2	627	2	SENP5	3	196612677	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	12836292	196612677	1409753	89	154805											
DLG1	1739	broad.mit.edu	37	chr3	196792237	196792237	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaatttatgttcctggatAtctttttccatctgctctct	5	9	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196792237	T	T	196792237	3	4	192	1	0	0	0	0	1	0	0	0	4594	446	16	5	414	5	DLG1	3	196792237	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	179560	196792237	1230193	90	154806											
ZNF595	152687	broad.mit.edu	37	chr4	53545	53545	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctgtcggtccccgcaCggcggctctggcccagcctg	14	18	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53545	A	A	53545	1	1	192	0	1	0	0	0	0	0	0	0	18152	551	19	3		3	ZNF595	4	53545	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08		53545	191100731	91	154807											
C4orf50	389197	broad.mit.edu	37	chr4	5975252	5975252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagaggaaaagccagggGgtgtcttcttgggtagtgtc	16	7	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5975252	T	T	5975252	1	4	192	0	1	0	0	0	0	0	0	0	2299	1247	43	2		2	C4orf50	4	5975252	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	5921707	5975252	185179024	92	154808											
CPZ	8532	broad.mit.edu	37	chr4	8616222	8616222	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcactcctgaatttcgtggaGacggtgagttctgacggtct	12	9	3	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8616222	T	T	8616222	3	4	192	1	0	0	0	0	1	0	0	0	3871	933	33	3	1534	3	CPZ	4	8616222	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	2640970	8616222	182538054	93	154809											
SRD5A3	79644	broad.mit.edu	37	chr4	56236379	56236380	+	3'UTR	INS	-	ACCCC	ACCCC													actctccattccatttctatINSaccccacaagttttcactga							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	ACCCC	56236380	ACCCC	ACCCC	56236379	6	5	192	0	1	1	1	0	0	0	0	0	15258	1421	49	0		0	SRD5A3	4	56236379	3'UTR	INS	-	TCGA-64-5815-01A-01D-1625-08	47620157	56236379	134917897	94	154810											
UGT2B10	7365	broad.mit.edu	37	chr4	69696511	69696511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcctgctggcttgtgtgGcaaccgtgctatttatcatc	11	10	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69696511	T	T	69696511	3	4	192	1	0	0	0	0	1	0	0	0	17082	1203	42	3	1523	3	UGT2B10	4	69696511	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	13460132	69696511	121457765	95	154811											
PPBP	5473	broad.mit.edu	37	chr4	74852992	74852992	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaaacagaacaaattaAtcagcagattcatcacctgc	7	10	3	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74852992	G	G	74852992	2	3	192	1	0	0	0	0	0	0	0	1	12399	98	4	5		5	PPBP	4	74852992	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	5156481	74852992	116301284	96	154812											
SHROOM3	57619	broad.mit.edu	37	chr4	77660075	77660075	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcagcattgaccagctcaGccacttccataacaagagag	9	13	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77660075	T	T	77660075	3	4	192	1	0	0	0	0	1	0	0	0	14408	971	34	3	767	3	SHROOM3	4	77660075	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	2807083	77660075	113494201	97	154813											
CCNG2	901	broad.mit.edu	37	chr4	78086865	78086865	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatataaaaatcctcactAgagatatagcagctttattt	5	6	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78086865	G	G	78086865	1	3	192	0	1	0	0	0	0	0	0	0	2954	435	15	5		5	CCNG2	4	78086865	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	426790	78086865	113067411	98	154814											
WDFY3	23001	broad.mit.edu	37	chr4	85605000	85605000	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagttcactaaacattacAacttgttcaggtgttcttaa	7	7	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85605000	T	T	85605000	1	4	192	0	1	0	0	0	0	0	0	0	17397	145	5	5		5	WDFY3	4	85605000	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	7518135	85605000	105549276	99	154815											
AIMP1	9255	broad.mit.edu	37	chr4	107248721	107248721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagaaattcaaaatggaGgtaattaaatatagaaaatt	8	2	1	2	rs147151240		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107248721	T	T	107248721	3	4	192	1	0	0	0	0	1	0	0	0	433	1014	35	2	305	2	AIMP1	4	107248721	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	21643721	107248721	83905555	100	154816											
ENPEP	2028	broad.mit.edu	37	chr4	111463882	111463882	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgcatgcaaacatgttgctCattagtgtttatttactact	7	7	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111463882	T	T	111463882	1	4	192	0	1	0	0	0	0	0	0	0	5170	841	29	4		4	ENPEP	4	111463882	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	4215161	111463882	79690394	101	154817											
PHF17	79960	broad.mit.edu	37	chr4	129773461	129773461	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagaaagaagaaacctggGgcatgagcctgtctgctgtg	14	9	1	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129773461	A	A	129773461	1	1	192	0	1	0	0	0	0	0	0	0	11923	1247	43	4		4	PHF17	4	129773461	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	18309579	129773461	61380815	102	154818											
RBM46	166863	broad.mit.edu	37	chr4	155720082	155720082	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaacaattaaagcagaattCaataaatttaagcctggtgc	7	6	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155720082	A	A	155720082	3	1	192	1	0	0	0	0	1	0	0	0	13248	825	29	3	778	3	RBM46	4	155720082	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	25946621	155720082	35434194	103	154819											
GLRB	2743	broad.mit.edu	37	chr4	158060162	158060162	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatacattttaattaatacAtagccaaggggagagtagaa	9	4	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158060162	T	T	158060162	1	4	192	0	1	0	0	0	0	0	0	0	6522	232	8	5		5	GLRB	4	158060162	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	2340080	158060162	33094114	104	154820											
TRIM60	166655	broad.mit.edu	37	chr4	165961175	165961175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgcgctctacggaggcaGgactgatcaaagggaggtta	15	7	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165961175	T	T	165961175	1	4	192	0	1	0	0	0	0	0	0	0	16660	1015	35	2		2	TRIM60	4	165961175	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	7901013	165961175	25193101	105	154821											
CLCN3	1182	broad.mit.edu	37	chr4	170610315	170610315	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggatctaatgaaacaacAtttgaagagagggataaatg	12	3	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170610315	T	T	170610315	2	4	192	1	0	0	0	0	0	0	0	1	3495	204	8	5		5	CLCN3	4	170610315	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	4649140	170610315	20543961	106	154822											
VEGFC	7424	broad.mit.edu	37	chr4	177649058	177649058	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcgcgactccaaactcCttccccacatctatacacac	3	17	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177649058	A	A	177649058	3	1	192	1	0	0	0	0	1	0	0	0	17279	680	24	2	856	2	VEGFC	4	177649058	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	7038743	177649058	13505218	107	154823											
ACSL1	2180	broad.mit.edu	37	chr4	185687962	185687962	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctactaggatggccagagTcaaagagtgtggagaaatca	12	7	2	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185687962	C	C	185687962	1	2	192	0	1	0	0	0	0	0	0	0	177	1682	58	5		5	ACSL1	4	185687962	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	8038904	185687962	5466314	108	154824											
ACSL1	2180	broad.mit.edu	37	chr4	185705147	185705147	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaaacaagggccattatcTaaaaaaagagaaaaaacaac	5	8	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185705147	C	C	185705147	5	2	192	1	0	0	0	0	0	0	1	0	177	1536	53	5	1859	5	ACSL1	4	185705147	Splice_Site	SNP	T	TCGA-64-5815-01A-01D-1625-08	17185	185705147	5449129	109	154825											
SEMA5A	9037	broad.mit.edu	37	chr5	9052129	9052129	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcagaccagtccgaccactCcgaccagctctctgcagaga	8	17	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9052129	A	A	9052129	4	1	192	1	0	0	0	0	0	1	0	0	14150	864	30	3	539	3	SEMA5A	5	9052129	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08		9052129	171863131	110	154826											
DNAH5	1767	broad.mit.edu	37	chr5	13845137	13845137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacataaacctttataacCacacaaagctggtcgttcaa	4	10	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13845137	A	A	13845137	1	1	192	0	1	0	0	0	0	0	0	0	4644	609	21	2		2	DNAH5	5	13845137	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	4793008	13845137	167070123	111	154827											
PRDM9	56979	broad.mit.edu	37	chr5	23523009	23523009	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctggtaagaagagcctgCcatttcccctgttctgtctt	10	11	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23523009	A	A	23523009	1	1	192	0	1	0	0	0	0	0	0	0	12569	754	26	3		3	PRDM9	5	23523009	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	9677872	23523009	157392251	112	154828											
MTMR12	54545	broad.mit.edu	37	chr5	32230132	32230132	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggacttcctccatcatttCcaagagtttgctcagagtgg	9	11	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32230132	A	A	32230132	4	1	192	1	0	0	0	0	0	1	0	0	10035	864	30	3	251	3	MTMR12	5	32230132	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	8707123	32230132	148685128	113	154829											
SLC1A3	6507	broad.mit.edu	37	chr5	36679929	36679929	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttattggagggttgctgcAagcactcatcaccgctctgg	11	10	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36679929	T	T	36679929	3	4	192	1	0	0	0	0	1	0	0	0	14546	130	5	5	1100	5	SLC1A3	5	36679929	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	4449797	36679929	144235331	114	154830											
CARD6	84674	broad.mit.edu	37	chr5	40853444	40853444	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcagagaattcaagtttcCtctggagaaaacatggctgg	10	8	3	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40853444	T	T	40853444	2	4	192	1	0	0	0	0	0	0	0	1	2676	668	24	4		4	CARD6	5	40853444	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	4173515	40853444	140061816	115	154831											
C5orf35	133383	broad.mit.edu	37	chr5	56210785	56210785	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacattgcctacagctatgaCaaacaaaggttcgtttgcta	7	9	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56210785	G	G	56210785	3	3	192	1	0	0	0	0	1	0	0	0	2317	477	17	4	822	4	C5orf35	5	56210785	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	15357341	56210785	124704475	116	154832											
VCAN	1462	broad.mit.edu	37	chr5	82789279	82789279	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attactatgtatccaactaaGttgatacattgctccaatga	5	8	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82789279	C	C	82789279	1	2	192	0	1	0	0	0	0	0	0	0	17265	1044	36	4		4	VCAN	5	82789279	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	26578494	82789279	98125981	117	154833											
VCAN	1462	broad.mit.edu	37	chr5	82876058	82876058	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcattttacggctgtggtatCggcagtttagggtatggagc	14	6	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82876058	G	G	82876058	1	3	192	0	1	0	0	0	0	0	0	0	17265	899	31	4		4	VCAN	5	82876058	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	86779	82876058	98039202	118	154834											
PPIP5K2	23262	broad.mit.edu	37	chr5	102503117	102503117	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaatcttgttgtaagaaatCaagcctctcttgagagctat	7	9	3	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102503117	A	A	102503117	1	1	192	0	1	0	0	0	0	0	0	0	12434	841	29	3		3	PPIP5K2	5	102503117	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	19627059	102503117	78412143	119	154835											
PPIP5K2	23262	broad.mit.edu	37	chr5	102519086	102519086	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattggctttcacatccaGtatttttggctcatggcaac	7	10	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102519086	T	T	102519086	3	4	192	1	0	0	0	0	1	0	0	0	12434	1029	36	3	3168	3	PPIP5K2	5	102519086	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	15969	102519086	78396174	120	154836											
FER	2241	broad.mit.edu	37	chr5	108516644	108516644	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttaatggtaaaaatgaaCggcatcagcataaaacattc	6	6	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108516644	T	T	108516644	1	4	192	0	1	0	0	0	0	0	0	0	5870	551	19	4		4	FER	5	108516644	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	5997558	108516644	72398616	121	154837											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711971	140711971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccacagatggttctaccGgcgtggagctggcgcccctc	12	16	1	1	rs115926650	by1000genomes	TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140711971	T	T	140711971	3	4	192	1	0	0	0	0	1	0	0	0	11644	1116	39	1	1722	1	PCDHGA1	5	140711971	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	32195327	140711971	40203289	122	154838											
FAM71B	153745	broad.mit.edu	37	chr5	156592944	156592944	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcaggcagtgggaggatgGggctggtgcagacgatgccc	19	9	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156592944	T	T	156592944	3	4	192	1	0	0	0	0	1	0	0	0	5659	1232	43	2	1589	2	FAM71B	5	156592944	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	15880973	156592944	24322316	123	154839											
WWC1	23286	broad.mit.edu	37	chr5	167881064	167881064	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagaagaggatgttttcaccGagaaagcctcacctgatatg	11	8	2	4	rs145748084		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167881064	T	T	167881064	4	4	192	1	0	0	0	0	0	1	0	0	17538	1059	37	3	2687	3	WWC1	5	167881064	Nonsense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	11288120	167881064	13034196	124	154840											
GFPT2	9945	broad.mit.edu	37	chr5	179739458	179739458	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatctcaagccacggatgatCtcttgcctcctgttttgtag	9	11	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179739458	A	A	179739458	3	1	192	1	0	0	0	0	1	0	0	0	6410	912	32	3	550	3	GFPT2	5	179739458	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	11858394	179739458	1175802	125	154841											
SLC17A1	6568	broad.mit.edu	37	chr6	25812050	25812050	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgatgggtaaagcagtactGacacacagagtaatccctat	9	8	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25812050	T	T	25812050	1	4	192	0	1	0	0	0	0	0	0	0	14529	1305	45	3		3	SLC17A1	6	25812050	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08		25812050	145303017	126	154842											
SLC17A3	10786	broad.mit.edu	37	chr6	25850090	25850090	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgacacaatgtgcttaatCcgcaagagagcgtcagcaag	10	10	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25850090	A	A	25850090	3	1	192	1	0	0	0	0	1	0	0	0	14531	855	30	3	294	3	SLC17A3	6	25850090	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	38040	25850090	145264977	127	154843											
ZFP57	346171	broad.mit.edu	37	chr6	29640833	29640833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggtcctggtcacaggtGcttggttcttaagtacagat	12	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29640833	T	T	29640833	3	4	192	1	0	0	0	0	1	0	0	0	17777	1319	46	3	559	3	ZFP57	6	29640833	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	3790743	29640833	141474234	128	154844											
MDC1	9656	broad.mit.edu	37	chr6	30682849	30682849	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggcaccactaaagataTgtagccgccctactggctcc	9	14	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30682849	C	C	30682849	3	2	192	1	0	0	0	0	1	0	0	0	9496	1464	51	5	6221	5	MDC1	6	30682849	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	1042016	30682849	140432218	129	154845											
APOM	55937	broad.mit.edu	37	chr6	31625102	31625102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcccagccctcaccctcCcttgagtttggttctgcatc	6	17	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31625102	A	A	31625102	1	1	192	0	1	0	0	0	0	0	0	0	814	638	22	2		2	APOM	6	31625102	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	942253	31625102	139489965	130	154846											
BAT5	7920	broad.mit.edu	37	chr6	31661132	31661132	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagcaaaagaactggggccTcaccggctgctgggttcttc	12	12	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31661132	A	A	31661132	1	1	192	0	1	0	0	0	0	0	0	0	1329	1566	54	5		5	BAT5	6	31661132	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	36030	31661132	139453935	131	154847											
TNXB	7148	broad.mit.edu	37	chr6	32046888	32046888	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcatcttgtacttgtgccCgggctctaggcctcccacgg	12	14	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32046888	T	T	32046888	3	4	192	1	0	0	0	0	1	0	0	0	16469	652	23	4	10552	4	TNXB	6	32046888	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	385756	32046888	139068179	132	154848											
RPL10A	4736	broad.mit.edu	37	chr6	35436176	35436176	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgcatgcgcaagacatgCtagtctcttttccggttagc	11	11	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35436176	A	A	35436176	1	1	192	0	1	0	0	0	0	0	0	0	13666	812	28	3		3	RPL10A	6	35436176	5'Flank	SNP	C	TCGA-64-5815-01A-01D-1625-08	3389288	35436176	135678891	133	154849											
PTK7	5754	broad.mit.edu	37	chr6	43128496	43128496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagacttcctcagcccgaGggctgcccttccaaactcta	8	16	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43128496	T	T	43128496	3	4	192	1	0	0	0	0	1	0	0	0	12871	991	35	2	3168	2	PTK7	6	43128496	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	7692320	43128496	127986571	134	154850											
TFAP2D	83741	broad.mit.edu	37	chr6	50696491	50696491	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcccaaatccagaatagtCttttgatgttaactgcctct	5	10	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50696491	T	T	50696491	1	4	192	0	1	0	0	0	0	0	0	0	15913	928	32	4		4	TFAP2D	6	50696491	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	7567995	50696491	120418576	135	154851											
COL21A1	81578	broad.mit.edu	37	chr6	56044588	56044588	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catcttgggatttgccatccGtaagtaccactgctatctta	7	11	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56044588	A	A	56044588	3	1	192	1	0	0	0	0	1	0	0	0	3712	1145	40	4	2557	4	COL21A1	6	56044588	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	5348097	56044588	115070479	136	154852											
COL19A1	1310	broad.mit.edu	37	chr6	70851786	70851786	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaattattttatttacaggGagaacctggggtaataggat	11	3	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70851786	A	A	70851786	3	1	192	1	0	0	0	0	1	0	0	0	3708	1188	41	4	1562	4	COL19A1	6	70851786	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	14807198	70851786	100263281	137	154853											
MAP3K7	6885	broad.mit.edu	37	chr6	91257770	91257770	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taataacataacaaacctgtTgctttgcctgatttttcaac	4	9	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91257770	G	G	91257770	3	3	192	1	0	0	0	0	1	0	0	0	9347	1812	63	5	776	5	MAP3K7	6	91257770	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	20405984	91257770	79857297	138	154854											
C6orf167	253714	broad.mit.edu	37	chr6	97616244	97616244	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaataggaagagacataTagtagaagtaacaaatattt	10	2	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97616244	C	C	97616244	1	2	192	0	1	0	0	0	0	0	0	0	2365	1421	49	5		5	C6orf167	6	97616244	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	6358474	97616244	73498823	139	154855											
FIG4	9896	broad.mit.edu	37	chr6	110146400	110146400	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatccaggccagccaaggtAtcatgcagcccctaggaaaa	9	13	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110146400	G	G	110146400	3	3	192	1	0	0	0	0	1	0	0	0	5945	449	16	5	2746	5	FIG4	6	110146400	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	12530156	110146400	60968667	140	154856											
HDAC2	3066	broad.mit.edu	37	chr6	114262225	114262225	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgagactgtcaaattcaGgggttgctgagctgttctga	14	6	3	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114262225	A	A	114262225	2	1	192	1	0	0	0	0	0	0	0	1	7074	987	35	4		4	HDAC2	6	114262225	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	4115825	114262225	56852842	141	154857											
DLL1	28514	broad.mit.edu	37	chr6	170599211	170599211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcaccgccagggccagcGcgcaccgactgcccatgctg	13	17	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170599211	T	T	170599211	3	4	192	1	0	0	0	0	1	0	0	0	4606	1087	38	3	2198	3	DLL1	6	170599211	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	56336986	170599211	515856	142	154858											
CYTH3	9265	broad.mit.edu	37	chr7	6213366	6213366	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaatattaaattcatcccTgggaaaaaaagaagtaagtt	6	4	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6213366	A	A	6213366	5	1	192	1	0	0	0	0	0	0	1	0	4238	1594	55	5	864	5	CYTH3	7	6213366	Splice_Site	SNP	T	TCGA-64-5815-01A-01D-1625-08		6213366	152925297	143	154859											
THSD7A	221981	broad.mit.edu	37	chr7	11487045	11487045	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccatcttgcttgcgacaaGtaatggctaaaagaaaagca	8	9	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11487045	T	T	11487045	3	4	192	1	0	0	0	0	1	0	0	0	16002	1029	36	3	2425	3	THSD7A	7	11487045	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	5273679	11487045	147651618	144	154860											
THSD7A	221981	broad.mit.edu	37	chr7	11630124	11630124	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacttaattgtgagaggagGttttcgttggcctgcacgca	13	7	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11630124	A	A	11630124	2	1	192	1	0	0	0	0	0	0	0	1	16002	1252	44	4		4	THSD7A	7	11630124	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	143079	11630124	147508539	145	154861											
AOAH	313	broad.mit.edu	37	chr7	36571810	36571810	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccagccgtggcaggggctGacctgagagcgggaaaacac	15	11	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36571810	T	T	36571810	2	4	192	1	0	0	0	0	0	0	0	1	728	1277	45	3		3	AOAH	7	36571810	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	24941686	36571810	122566853	146	154862											
GCK	2645	broad.mit.edu	37	chr7	44197620	44197620	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattctgaagggaggtgggAggggctgaggagaggaacag	20	3	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44197620	T	T	44197620	1	4	192	0	1	0	0	0	0	0	0	0	6355	319	11	5		5	GCK	7	44197620	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	7625810	44197620	114941043	147	154863											
ABCA13	154664	broad.mit.edu	37	chr7	48335365	48335365	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagcaagaatctttctagCaccttggagagcttcaagag	9	9	3	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48335365	T	T	48335365	2	4	192	1	0	0	0	0	0	0	0	1	31	709	25	4		4	ABCA13	7	48335365	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	4137745	48335365	110803298	148	154864											
PSPH	5723	broad.mit.edu	37	chr7	56087449	56087449	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taggagggagacccaacagtCaggccagccaggtccgatgt	14	11	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56087449	T	T	56087449	1	4	192	0	1	0	0	0	0	0	0	0	12823	841	29	4		4	PSPH	7	56087449	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	7752084	56087449	103051214	149	154865											
PHKG1	5260	broad.mit.edu	37	chr7	56150945	56150945	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagcacccgaggcctggaCgtgggccaaggccatgttac	14	12	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56150945	T	T	56150945	1	4	192	0	1	0	0	0	0	0	0	0	11941	551	19	4		4	PHKG1	7	56150945	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	63496	56150945	102987718	150	154866											
ZNF479	90827	broad.mit.edu	37	chr7	57187759	57187759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtatgaattctcttgtGgtcagtgagggttgaggata	13	5	2	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57187759	T	T	57187759	3	4	192	1	0	0	0	0	1	0	0	0	18060	1348	47	2	215	2	ZNF479	7	57187759	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	1036814	57187759	101950904	151	154867											
CACNA2D1	781	broad.mit.edu	37	chr7	81579742	81579742	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgctgccagataccagcCaaagtagtagaaactggatt	11	8	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81579742	T	T	81579742	4	4	192	1	0	0	0	0	0	1	0	0	2574	595	21	4	37	4	CACNA2D1	7	81579742	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	24391983	81579742	77558921	152	154868											
CACNA2D1	781	broad.mit.edu	37	chr7	81978874	81978874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaaatctctttggtggaTtttactcacatcaacaagct	6	8	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81978874	A	A	81978874	1	1	192	0	1	0	0	0	0	0	0	0	2574	1508	52	5		5	CACNA2D1	7	81978874	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	399132	81978874	77159789	153	154869											
SAMD9	54809	broad.mit.edu	37	chr7	92734862	92734862	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgcctggtcctgtttcAggctgtagactaaaatccaa	9	9	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92734862	G	G	92734862	2	3	192	1	0	0	0	0	0	0	0	1	13937	175	7	5		5	SAMD9	7	92734862	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	10755988	92734862	66403801	154	154870											
COL1A2	1278	broad.mit.edu	37	chr7	94053593	94053593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacaatcttcaagccaacCtgtgttatcacctagggtct	6	13	5	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94053593	A	A	94053593	1	1	192	0	1	0	0	0	0	0	0	0	3710	696	24	2		2	COL1A2	7	94053593	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	1318731	94053593	65085070	155	154871											
MOGAT3	346606	broad.mit.edu	37	chr7	100841370	100841370	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagggcagggcgctggtctCtgggcacccggatcccccat	15	15	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100841370	A	A	100841370	1	1	192	0	1	0	0	0	0	0	0	0	9790	928	32	3		3	MOGAT3	7	100841370	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	6787777	100841370	58297293	156	154872											
C7orf58	79974	broad.mit.edu	37	chr7	120704338	120704338	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccactttgcagaaaggaagGattatgtcaaatagttagaa	10	5	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120704338	C	C	120704338	3	2	192	1	0	0	0	0	1	0	0	0	2430	1174	41	4	601	4	C7orf58	7	120704338	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	19862968	120704338	38434325	157	154873											
ASB15	142685	broad.mit.edu	37	chr7	123268939	123268939	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcactgaaatatcttatcccAgtaacatctaaaaatgcaat	4	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123268939	T	T	123268939	2	4	192	1	0	0	0	0	0	0	0	1	1023	175	7	5		5	ASB15	7	123268939	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	2564601	123268939	35869724	158	154874											
GCC1	79571	broad.mit.edu	37	chr7	127222089	127222089	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catctcttgccagaaggccaCcagctggcactggttgggag	13	12	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127222089	T	T	127222089	4	4	192	1	0	0	0	0	0	1	0	0	6347	508	18	4	24	4	GCC1	7	127222089	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	3953150	127222089	31916574	159	154875											
GCC1	79571	broad.mit.edu	37	chr7	127224378	127224378	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtctgcagttcaaatcCttccatctgttcagctgcat	7	12	4	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127224378	A	A	127224378	4	1	192	1	0	0	0	0	0	1	0	0	6347	690	24	2	1476	2	GCC1	7	127224378	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	2289	127224378	31914285	160	154876											
FLNC	2318	broad.mit.edu	37	chr7	128485006	128485006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggtgcgggccagtggaCcgggcctggagcgcggcaag	20	11	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128485006	A	A	128485006	3	1	192	1	0	0	0	0	1	0	0	0	5993	507	18	3	3569	3	FLNC	7	128485006	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	1260628	128485006	30653657	161	154877											
MEST	4232	broad.mit.edu	37	chr7	130137704	130137704	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaagatagggctgaagctCctgtgcaactgtaggtctgg	14	9	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130137704	T	T	130137704	1	4	192	0	1	0	0	0	0	0	0	0	9577	870	30	4		4	MEST	7	130137704	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	1652698	130137704	29000959	162	154878											
MKLN1	4289	broad.mit.edu	37	chr7	131099382	131099382	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttgttattcctttaaaaGaaactattatttcttctaaa	2	6	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131099382	A	A	131099382	1	1	192	0	1	0	0	0	0	0	0	0	9696	957	33	4		4	MKLN1	7	131099382	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	961678	131099382	28039281	163	154879											
AKR1B15	441282	broad.mit.edu	37	chr7	134256450	134256450	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtaggttccagctttgTctaagtgtgctgggagagaa	16	5	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134256450	C	C	134256450	1	2	192	0	1	0	0	0	0	0	0	0	468	1682	58	5		5	AKR1B15	7	134256450	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	3157068	134256450	24882213	164	154880											
TBXAS1	6916	broad.mit.edu	37	chr7	139655522	139655522	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgggaaagggcactcgggTtgttcccctgcagaggcttt	14	10	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139655522	C	C	139655522	1	2	192	0	1	0	0	0	0	0	0	0	15786	1740	60	5		5	TBXAS1	7	139655522	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	5399072	139655522	19483141	165	154881											
MGAM	8972	broad.mit.edu	37	chr7	141805562	141805562	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacctgatttatttgcatGcaggaaatttcaacaccgga	8	9	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141805562	T	T	141805562	1	4	192	0	1	0	0	0	0	0	0	0	9634	1334	46	3		3	MGAM	7	141805562	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	2150040	141805562	17333101	166	154882											
EPHB6	2051	broad.mit.edu	37	chr7	142563350	142563350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctggagggcttctaccGggccagttccgacccaccag	12	16	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142563350	T	T	142563350	3	4	192	1	0	0	0	0	1	0	0	0	5220	1116	39	1	1081	1	EPHB6	7	142563350	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	757788	142563350	16575313	167	154883											
CNTNAP2	26047	broad.mit.edu	37	chr7	147869451	147869451	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgggttcatatccggatgctCgggccattgcaccagctatg	12	11	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147869451	A	A	147869451	4	1	192	1	0	0	0	0	0	1	0	0	3679	893	31	3	2961	3	CNTNAP2	7	147869451	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	5306101	147869451	11269212	168	154884											
ZNF786	136051	broad.mit.edu	37	chr7	148771596	148771596	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctctcccccgtgttcaatCcaggatattagttctggttt	9	11	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148771596	A	A	148771596	3	1	192	1	0	0	0	0	1	0	0	0	18287	856	30	3	2176	3	ZNF786	7	148771596	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	902145	148771596	10367067	169	154885											
NOS3	4846	broad.mit.edu	37	chr7	150706194	150706194	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggctggttctctgaggccCccacaccccgggactaaagc	11	17	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150706194	G	G	150706194	1	3	192	0	1	0	0	0	0	0	0	0	10639	638	22	4		4	NOS3	7	150706194	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	1934598	150706194	8432469	170	154886											
TRIM35	23087	broad.mit.edu	37	chr8	27145336	27145336	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgcagtggtccccctccaCgccctgcgtgcggcagacat	11	18	0	1	rs148875535		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27145336	G	G	27145336	3	3	192	1	0	0	0	0	1	0	0	0	16633	536	19	4	272	4	TRIM35	8	27145336	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08		27145336	119218686	171	154887											
TEX15	56154	broad.mit.edu	37	chr8	30702993	30702993	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttttctattagtttctcatCtgagtggtctggggaaaaca	9	6	4	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30702993	A	A	30702993	3	1	192	1	0	0	0	0	1	0	0	0	15901	913	32	3	4844	3	TEX15	8	30702993	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	3557657	30702993	115661029	172	154888											
UNC5D	137970	broad.mit.edu	37	chr8	35608088	35608088	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgagagaataaacatacCtttcccaacaggaagtgatg	9	7	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35608088	T	T	35608088	1	4	192	0	1	0	0	0	0	0	0	0	17121	696	24	4		4	UNC5D	8	35608088	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	4905095	35608088	110755934	173	154889											
UBE2V2	7336	broad.mit.edu	37	chr8	48921025	48921025	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaggagaagatggcggtctCcacaggtcggttcccgggcc	16	12	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48921025	T	T	48921025	3	4	192	1	0	0	0	0	1	0	0	0	17002	855	30	4	13	4	UBE2V2	8	48921025	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	13312937	48921025	97442997	174	154890											
RP1	6101	broad.mit.edu	37	chr8	55537899	55537899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattggacagttttcatataGtgaagaaagggaaagtgggg	15	2	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55537899	T	T	55537899	3	4	192	1	0	0	0	0	1	0	0	0	13643	1029	36	3	1467	3	RP1	8	55537899	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	6616874	55537899	90826123	175	154891											
ADHFE1	137872	broad.mit.edu	37	chr8	67364149	67364149	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atggagggaaggaggaagatGacgctttccatctgtgtact	14	6	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67364149	A	A	67364149	1	1	192	0	1	0	0	0	0	0	0	0	314	1305	45	4		4	ADHFE1	8	67364149	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	11826250	67364149	78999873	176	154892											
ZFHX4	79776	broad.mit.edu	37	chr8	77618441	77618441	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgtgaggtttgtaactaCtctaccactaccaaaggcaa	8	10	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77618441	A	A	77618441	4	1	192	1	0	0	0	0	0	1	0	0	17761	576	20	3	2120	3	ZFHX4	8	77618441	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	10254292	77618441	68745581	177	154893											
RUNX1T1	862	broad.mit.edu	37	chr8	92998999	92998999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctcatttttttttcaaGgatagcaggaaaaacaatgc	7	8	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92998999	A	A	92998999	1	1	192	0	1	0	0	0	0	0	0	0	13858	1015	35	4		4	RUNX1T1	8	92998999	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	15380558	92998999	53365023	178	154894											
RNF19A	25897	broad.mit.edu	37	chr8	101276266	101276266	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttaaaggacttacctacAgctgtgttagttccaccaac	7	11	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101276266	C	C	101276266	2	2	192	1	0	0	0	0	0	0	0	1	13581	175	7	5		5	RNF19A	8	101276266	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	8277267	101276266	45087756	179	154895											
RIMS2	9699	broad.mit.edu	37	chr8	104943582	104943582	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggaagatgggaggccaaGgaatccttatgttaaaattt	12	5	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104943582	C	C	104943582	3	2	192	1	0	0	0	0	1	0	0	0	13479	1000	35	4	2508	4	RIMS2	8	104943582	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	3667316	104943582	41420440	180	154896											
RSPO2	340419	broad.mit.edu	37	chr8	108995492	108995492	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agctatgaagctgacacagtCtgagcaggctcatctttcac	9	11	4	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108995492	A	A	108995492	1	1	192	0	1	0	0	0	0	0	0	0	13821	928	32	3		3	RSPO2	8	108995492	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	4051910	108995492	37368530	181	154897											
CSMD3	114788	broad.mit.edu	37	chr8	113241099	113241099	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggttgatttgaagaatttGaaccttctgacatattcagt	9	5	2	5			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113241099	T	T	113241099	4	4	192	1	0	0	0	0	0	1	0	0	3980	1294	45	3	281	3	CSMD3	8	113241099	Nonsense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	4245607	113241099	33122923	182	154898											
COL22A1	169044	broad.mit.edu	37	chr8	139819894	139819894	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccatctaatttaacaagcTctgaggcaaaatattagcaa	5	8	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139819894	C	C	139819894	1	2	192	0	1	0	0	0	0	0	0	0	3713	1566	54	5		5	COL22A1	8	139819894	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	26578795	139819894	6544128	183	154899											
GPR20	2843	broad.mit.edu	37	chr8	142367968	142367968	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtccgcactgttgtcactGcggtggcattggggactgcc	15	11	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142367968	A	A	142367968	3	1	192	1	0	0	0	0	1	0	0	0	6745	1319	46	4	1024	4	GPR20	8	142367968	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	2548074	142367968	3996054	184	154900											
CER1	9350	broad.mit.edu	37	chr9	14720224	14720224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacggaggaaagttcagtgCagttcagtggcaagtgcatc	13	8	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14720224	A	A	14720224	3	1	192	1	0	0	0	0	1	0	0	0	3295	710	25	3	139	3	CER1	9	14720224	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08		14720224	126493207	185	154901											
KIF24	347240	broad.mit.edu	37	chr9	34257577	34257577	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccaaggacagttttgttGcccattcgatttttctcaga	7	11	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34257577	T	T	34257577	2	4	192	1	0	0	0	0	0	0	0	1	8362	1306	46	3		3	KIF24	9	34257577	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	19537353	34257577	106955854	186	154902											
ECM2	1842	broad.mit.edu	37	chr9	95274412	95274412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcgatggaattgcctaGgacacacagcggttatgttt	14	7	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95274412	T	T	95274412	1	4	192	0	1	0	0	0	0	0	0	0	4938	1015	35	2		2	ECM2	9	95274412	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	61016835	95274412	45939019	187	154903											
C9orf3	84909	broad.mit.edu	37	chr9	97563392	97563392	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatttgattagaatggagGggctatggttgctcatgctt	13	5	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97563392	A	A	97563392	1	1	192	0	1	0	0	0	0	0	0	0	2503	1247	43	4		4	C9orf3	9	97563392	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	2288980	97563392	43650039	188	154904											
GRIN3A	116443	broad.mit.edu	37	chr9	104432620	104432620	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccattcatacagagtgaGgaagacggcagtgatgtgca	12	8	1	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104432620	A	A	104432620	3	1	192	1	0	0	0	0	1	0	0	0	6849	1000	35	4	1301	4	GRIN3A	9	104432620	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	6869228	104432620	36780811	189	154905											
OR13C4	138804	broad.mit.edu	37	chr9	107288953	107288953	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttaggacagctaagatctCgcataagaaatgattaataa	7	5	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107288953	A	A	107288953	4	1	192	1	0	0	0	0	0	1	0	0	11030	893	31	3	420	3	OR13C4	9	107288953	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	2856333	107288953	33924478	190	154906											
TMEM38B	55151	broad.mit.edu	37	chr9	108521630	108521630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttcaaatcaatggagtGccttcttctcagtctgcttc	6	12	5	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108521630	T	T	108521630	1	4	192	0	1	0	0	0	0	0	0	0	16283	1334	46	3		3	TMEM38B	9	108521630	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	1232677	108521630	32691801	191	154907											
SVEP1	79987	broad.mit.edu	37	chr9	113173790	113173790	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgaccttctgggggtacCcacttgccctgggcattgca	11	13	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113173790	T	T	113173790	4	4	192	1	0	0	0	0	0	1	0	0	15538	624	22	4	4562	4	SVEP1	9	113173790	Nonsense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	4652160	113173790	28039641	192	154908											
ASTN2	23245	broad.mit.edu	37	chr9	119625793	119625793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccagcgttccctcgcagGgcagggcttctagcaggtgg	14	12	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119625793	T	T	119625793	1	4	192	0	1	0	0	0	0	0	0	0	1069	1247	43	2		2	ASTN2	9	119625793	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	6452003	119625793	21587638	193	154909											
NAIF1	203245	broad.mit.edu	37	chr9	130825794	130825794	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagctgtgttgctctgcagGtagcggcggaaatctttgat	13	7	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130825794	A	A	130825794	2	1	192	1	0	0	0	0	0	0	0	1	10240	1256	44	4		4	NAIF1	9	130825794	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	11200001	130825794	10387637	194	154910											
DOLPP1	57171	broad.mit.edu	37	chr9	131847496	131847496	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctcccaggcccccacacAgcagtgggcaccaagtacgg	10	17	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131847496	T	T	131847496	2	4	192	1	0	0	0	0	0	0	0	1	4744	175	7	5		5	DOLPP1	9	131847496	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	1021702	131847496	9365935	195	154911											
POMT1	10585	broad.mit.edu	37	chr9	134382772	134382772	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaatacagtagcaacgtgCctgtgtggtccctgcgcctg	12	12	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134382772	T	T	134382772	3	4	192	1	0	0	0	0	1	0	0	0	12340	739	26	4	312	4	POMT1	9	134382772	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	2535276	134382772	6830659	196	154912											
NTNG2	84628	broad.mit.edu	37	chr9	135074052	135074052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggatgctatctgttacCtgggacgttattggatacct	11	9	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135074052	A	A	135074052	1	1	192	0	1	0	0	0	0	0	0	0	10800	696	24	2		2	NTNG2	9	135074052	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	691280	135074052	6139379	197	154913											
ITGA8	8516	broad.mit.edu	37	chr10	15726164	15726164	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaaatacatttttgatGtaggtttctcatactacagt	5	6	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15726164	A	A	15726164	1	1	192	0	1	0	0	0	0	0	0	0	7952	1392	48	4		4	ITGA8	10	15726164	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08		15726164	119808583	198	154914											
CDK1	983	broad.mit.edu	37	chr10	62545253	62545253	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaattttaaatagttgccCtgagattcctttcttaaatt	4	7	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62545253	T	T	62545253	1	4	192	0	1	0	0	0	0	0	0	0	3154	696	24	4		4	CDK1	10	62545253	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	46819089	62545253	72989494	199	154915											
KIAA1274	27143	broad.mit.edu	37	chr10	72299432	72299432	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacctgccttaccatgcagGaggtcttcagccagcaccgc	10	15	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72299432	A	A	72299432	3	1	192	1	0	0	0	0	1	0	0	0	8290	1175	41	4	1876	4	KIAA1274	10	72299432	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	9754179	72299432	63235315	200	154916											
MAT1A	4143	broad.mit.edu	37	chr10	82043758	82043758	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccattgaggtgatctcaCcacacagcagcaccatgccg	10	14	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82043758	T	T	82043758	3	4	192	1	0	0	0	0	1	0	0	0	9421	507	18	4	1009	4	MAT1A	10	82043758	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	9744326	82043758	53490989	201	154917											
PAX2	5076	broad.mit.edu	37	chr10	102540916	102540916	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccttatgtcctctgcttctCtctgccccccagccttgggg	8	17	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102540916	A	A	102540916	1	1	192	0	1	0	0	0	0	0	0	0	11573	928	32	3		3	PAX2	10	102540916	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	20497158	102540916	32993831	202	154918											
C10orf76	79591	broad.mit.edu	37	chr10	103793010	103793010	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcaattttagttaccaGgaaattccacagatgccacc	8	10	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103793010	A	A	103793010	1	1	192	0	1	0	0	0	0	0	0	0	1627	1015	35	4		4	C10orf76	10	103793010	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	1252094	103793010	31741737	203	154919											
SORCS3	22986	broad.mit.edu	37	chr10	107016648	107016648	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattatcagtggtatttgttGgcctggctgtgtttttgatc	11	5	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107016648	C	C	107016648	3	2	192	1	0	0	0	0	1	0	0	0	15046	1348	47	4	3507	4	SORCS3	10	107016648	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	3223638	107016648	28518099	204	154920											
SORCS1	114815	broad.mit.edu	37	chr10	108716302	108716302	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctctgtgatgctccccaGgttatagtcatagagctttg	10	10	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108716302	A	A	108716302	2	1	192	1	0	0	0	0	0	0	0	1	15044	991	35	4		4	SORCS1	10	108716302	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	1699654	108716302	26818445	205	154921											
C10orf90	118611	broad.mit.edu	37	chr10	128149993	128149993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtcaaagatcttgcagGcgtttgctgagactcagaac	11	9	3	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128149993	T	T	128149993	3	4	192	1	0	0	0	0	1	0	0	0	1634	1203	42	3	423	3	C10orf90	10	128149993	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	19433691	128149993	7384754	206	154922											
C10orf90	118611	broad.mit.edu	37	chr10	128193340	128193340	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggggcccacgcgtctggcCgtgatggtgatggatgcaaa	18	9	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128193340	T	T	128193340	2	4	192	1	0	0	0	0	0	0	0	1	1634	639	23	4		4	C10orf90	10	128193340	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	43347	128193340	7341407	207	154923											
GAS2	2620	broad.mit.edu	37	chr11	22696333	22696333	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagttcattataatgtcatGatgacaacattttgtgagag	8	6	2	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22696333	A	A	22696333	1	1	192	0	1	0	0	0	0	0	0	0	6307	1305	45	4		4	GAS2	11	22696333	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08		22696333	112310183	208	154924											
HIPK3	10114	broad.mit.edu	37	chr11	33373699	33373699	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagattctatatgccagcCattaataaaaggacgatctg	8	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33373699	T	T	33373699	3	4	192	1	0	0	0	0	1	0	0	0	7185	594	21	4	3117	4	HIPK3	11	33373699	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	10677366	33373699	101632817	209	154925											
ACCSL	390110	broad.mit.edu	37	chr11	44069816	44069816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagtcgcttaatatgccGgatgatcaacctcctacagt	8	11	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44069816	T	T	44069816	3	4	192	1	0	0	0	0	1	0	0	0	134	1116	39	1	232	1	ACCSL	11	44069816	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	10696117	44069816	90936700	210	154926											
OR4B1	119765	broad.mit.edu	37	chr11	48238701	48238701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgagatccttttgattGtggtgatggcctatgattgc	12	6	0	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48238701	T	T	48238701	3	4	192	1	0	0	0	0	1	0	0	0	11138	1377	48	3	342	3	OR4B1	11	48238701	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	4168885	48238701	86767815	211	154927											
OR5F1	338674	broad.mit.edu	37	chr11	55761523	55761523	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacttatgctttctttcagGattgtgtcagaacaagagag	10	6	3	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55761523	T	T	55761523	2	4	192	1	0	0	0	0	0	0	0	1	11252	1164	41	3		3	OR5F1	11	55761523	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	7522822	55761523	79244993	212	154928											
OR1S2	219958	broad.mit.edu	37	chr11	57970805	57970805	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacagcaccaatcttatcAgtgtcctcagggtgagtgga	12	9	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57970805	T	T	57970805	2	4	192	1	0	0	0	0	0	0	0	1	11067	175	7	5		5	OR1S2	11	57970805	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	2209282	57970805	77035711	213	154929											
OR5B2	390190	broad.mit.edu	37	chr11	58190310	58190310	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacatatgagcctagggccAgacaggcacctacactggcc	11	13	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58190310	T	T	58190310	3	4	192	1	0	0	0	0	1	0	0	0	11244	188	7	5	508	5	OR5B2	11	58190310	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	219505	58190310	76816206	214	154930											
C11orf66	220004	broad.mit.edu	37	chr11	61252760	61252760	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaccgccgccacacgccttCggggccctggtgggtcagtg	14	17	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61252760	T	T	61252760	1	4	192	0	1	0	0	0	0	0	0	0	1668	899	31	4		4	C11orf66	11	61252760	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	3062450	61252760	73753756	215	154931											
EEF1G	1937	broad.mit.edu	37	chr11	62341287	62341287	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taggatgacccgaaccaccaGagccagcaaacttaccccag	8	15	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62341287	A	A	62341287	1	1	192	0	1	0	0	0	0	0	0	0	4968	957	33	4		4	EEF1G	11	62341287	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	1088527	62341287	72665229	216	154932											
NXF1	10482	broad.mit.edu	37	chr11	62570880	62570880	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtaccatctactttctcAaagtactcactgtaatcttg	4	11	4	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62570880	G	G	62570880	1	3	192	0	1	0	0	0	0	0	0	0	10877	145	5	5		5	NXF1	11	62570880	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	229593	62570880	72435636	217	154933											
B3GNT6	192134	broad.mit.edu	37	chr11	76751142	76751142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggaggcgcgcgagcacGgcgacgtgctgcagtgggcc	19	13	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76751142	T	T	76751142	3	4	192	1	0	0	0	0	1	0	0	0	1266	1116	39	1	549	1	B3GNT6	11	76751142	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	14180262	76751142	58255374	218	154934											
INTS4	92105	broad.mit.edu	37	chr11	77632279	77632279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagcccaggagtttgagaCcgccctgggcaacataacaa	10	11	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77632279	A	A	77632279	1	1	192	0	1	0	0	0	0	0	0	0	7850	522	18	3		3	INTS4	11	77632279	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	881137	77632279	57374237	219	154935											
FOLH1B	219595	broad.mit.edu	37	chr11	89407464	89407464	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttttttccccaaaatctGagtaacatattcttgttcaa	4	8	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89407464	T	T	89407464	1	4	192	0	1	0	0	0	0	0	0	0	6038	1305	45	3		3	FOLH1B	11	89407464	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	11775185	89407464	45599052	220	154936											
FAT3	120114	broad.mit.edu	37	chr11	92614093	92614093	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttctctacactgttctttAttgctacaacaaaccagtaa	3	11	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92614093	T	T	92614093	1	4	192	0	1	0	0	0	0	0	0	0	5748	464	16	5		5	FAT3	11	92614093	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	3206629	92614093	42392423	221	154937											
TRPC6	7225	broad.mit.edu	37	chr11	101344259	101344259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttgtgaaggcttcattttGttttgcaccaatgtagtagg	11	6	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101344259	T	T	101344259	3	4	192	1	0	0	0	0	1	0	0	0	16708	1386	48	3	833	3	TRPC6	11	101344259	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	8730166	101344259	33662257	222	154938											
MMP20	9313	broad.mit.edu	37	chr11	102464254	102464254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttgctgcacgtgccttGgaaatccaaagtcataaata	7	9	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102464254	T	T	102464254	3	4	192	1	0	0	0	0	1	0	0	0	9752	1348	47	2	300	2	MMP20	11	102464254	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	1119995	102464254	32542262	223	154939											
MCAM	4162	broad.mit.edu	37	chr11	119181237	119181237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggaagagaagggcccGctgtgaaggatgtggaatgg	17	7	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119181237	T	T	119181237	1	4	192	0	1	0	0	0	0	0	0	0	9461	1102	38	3		3	MCAM	11	119181237	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	16716983	119181237	15825279	224	154940											
ADAMTS8	11095	broad.mit.edu	37	chr11	130284767	130284767	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtaagaacatgcacagGgctgccgccctctcagctct	12	13	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130284767	T	T	130284767	1	4	192	0	1	0	0	0	0	0	0	0	272	1247	43	2		2	ADAMTS8	11	130284767	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	11103530	130284767	4721749	225	154941											
ANO2	57101	broad.mit.edu	37	chr12	5687071	5687071	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actttgaagacctcagcttcTctggaagcccttcccacaga	7	14	2	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5687071	A	A	5687071	1	1	192	0	1	0	0	0	0	0	0	0	697	1566	54	5		5	ANO2	12	5687071	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08		5687071	128164824	226	154942											
VWF	7450	broad.mit.edu	37	chr12	6161858	6161858	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctccaggcaggcctcattGcattcctcatccgggtaaga	9	15	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6161858	T	T	6161858	4	4	192	1	0	0	0	0	0	1	0	0	17373	1311	46	3	6552	3	VWF	12	6161858	Nonsense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	474787	6161858	127690037	227	154943											
PRB4	5545	broad.mit.edu	37	chr12	11035376	11035376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctctgtcttcaccacaCggccggcccctctctgcctg	7	20	4	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11035376	A	A	11035376	1	1	192	0	1	0	0	0	0	0	0	0	12551	551	19	3		3	PRB4	12	11035376	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	4873518	11035376	122816519	228	154944											
PRB4	5545	broad.mit.edu	37	chr12	11182903	11182903	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtatacgttgggaaattatTcatacacatacagtatagaa	8	5	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11182903	A	A	11182903	1	1	192	0	1	0	0	0	0	0	0	0	12551	1798	62	5		5	PRB4	12	11182903	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	147527	11182903	122668992	229	154945											
ABCC9	10060	broad.mit.edu	37	chr12	22005185	22005185	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcggatattcccagaaatgTgacgaaaagccttgattggc	11	8	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22005185	A	A	22005185	1	1	192	0	1	0	0	0	0	0	0	0	59	1711	59	5		5	ABCC9	12	22005185	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	10822282	22005185	111846710	230	154946											
KRAS	3845	broad.mit.edu	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25380276	A	A	25380276	3	1	192	1	0	0	0	0	1	0	0	0	8509	1812	63	5	520	5	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	3375091	25380276	108471619	231	154947											
OVCH1	341350	broad.mit.edu	37	chr12	29648339	29648339	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgttcttgcttatccttCtgaaagaggctgtactcccc	7	12	3	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29648339	T	T	29648339	2	4	192	1	0	0	0	0	0	0	0	1	11417	912	32	4		4	OVCH1	12	29648339	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	4268063	29648339	104203556	232	154948											
DDX11	1663	broad.mit.edu	37	chr12	31236811	31236811	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactttgaacagaagaagcGtgaagaagaggcacgactcc	12	8	0	7			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31236811	A	A	31236811	3	1	192	1	0	0	0	0	1	0	0	0	4376	1145	40	4	215	4	DDX11	12	31236811	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	1588472	31236811	102615084	233	154949											
AQP2	359	broad.mit.edu	37	chr12	50348099	50348099	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggccctgggccacctcctTggggtaggtcatggccatgg	16	12	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50348099	A	A	50348099	2	1	192	1	0	0	0	0	0	0	0	1	828	1799	63	5		5	AQP2	12	50348099	Silent	SNP	T	TCGA-64-5815-01A-01D-1625-08	19111288	50348099	83503796	234	154950											
LETMD1	25875	broad.mit.edu	37	chr12	51442105	51442106	+	5'UTR	DEL	AC	-	-													cggttaactttgacccaaagAcaacctcttctctcccgctt							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51442106	-	-	51442105	6	5	192	0	1	1	0	1	0	0	0	0	8808	290	10	0		0	LETMD1	12	51442105	5'UTR	DEL	AC	TCGA-64-5815-01A-01D-1625-08	1094006	51442105	82409790	235	154951											
BIN2	51411	broad.mit.edu	37	chr12	51695957	51695957	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaacaacaactgcctacCagggaaatacccaaattctc	4	15	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51695957	T	T	51695957	1	4	192	0	1	0	0	0	0	0	0	0	1439	609	21	4		4	BIN2	12	51695957	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	253852	51695957	82155938	236	154952											
KRT74	121391	broad.mit.edu	37	chr12	52964528	52964528	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taatgcatgcggacctcagcGatgatgctgtcaaggtccag	12	10	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52964528	T	T	52964528	2	4	192	1	0	0	0	0	0	0	0	1	8558	1048	37	3		3	KRT74	12	52964528	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	1268571	52964528	80887367	237	154953											
NCKAP1L	3071	broad.mit.edu	37	chr12	54925693	54925693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatttgtggaagtattgcGggaatcagttttaacttctg	10	4	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54925693	T	T	54925693	1	4	192	0	1	0	0	0	0	0	0	0	10317	1131	39	1		1	NCKAP1L	12	54925693	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	1961165	54925693	78926202	238	154954											
ZFC3H1	196441	broad.mit.edu	37	chr12	72024814	72024814	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaactttagtttttctttCtcaagttaaaatttccatgc	4	7	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72024814	G	G	72024814	1	3	192	0	1	0	0	0	0	0	0	0	17759	928	32	4		4	ZFC3H1	12	72024814	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	17099121	72024814	61827081	239	154955											
GLIPR1	11010	broad.mit.edu	37	chr12	75875650	75875650	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagcccaaattgcaaaagcaTgggccagcaattgccagttt	9	10	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75875650	A	A	75875650	3	1	192	1	0	0	0	0	1	0	0	0	6505	1464	51	5	217	5	GLIPR1	12	75875650	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	3850836	75875650	57976245	240	154956											
NAP1L1	4673	broad.mit.edu	37	chr12	76442203	76442203	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcctcaaggccacatacatCctgcttcactgctgcttgca	6	15	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76442203	A	A	76442203	1	1	192	0	1	0	0	0	0	0	0	0	10250	870	30	3		3	NAP1L1	12	76442203	3'UTR	SNP	C	TCGA-64-5815-01A-01D-1625-08	566553	76442203	57409692	241	154957											
NTS	4922	broad.mit.edu	37	chr12	86272289	86272289	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctttagcttggaagcaaTgttgacaatataccagctcc	9	9	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86272289	A	A	86272289	3	1	192	1	0	0	0	0	1	0	0	0	10804	1464	51	5	312	5	NTS	12	86272289	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	9830086	86272289	47579606	242	154958											
ATXN2	6311	broad.mit.edu	37	chr12	111990053	111990053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaataaatctaataaacCatgaggcatatttaggaaat	6	5	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111990053	A	A	111990053	1	1	192	0	1	0	0	0	0	0	0	0	1215	609	21	2		2	ATXN2	12	111990053	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	25717764	111990053	21861842	243	154959											
MTUS2	23281	broad.mit.edu	37	chr13	29599523	29599523	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgctgtcccggcagctttcCctgcaactgacagtacctca	8	16	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29599523	T	T	29599523	3	4	192	1	0	0	0	0	1	0	0	0	10060	623	22	4	720	4	MTUS2	13	29599523	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08		29599523	85570355	244	154960											
TRPC4	7223	broad.mit.edu	37	chr13	38319968	38319968	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgtcatccacttacagctGaatagaaaatgctctaaaac	5	9	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38319968	C	C	38319968	1	2	192	0	1	0	0	0	0	0	0	0	16705	1305	45	4		4	TRPC4	13	38319968	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	8720445	38319968	76849910	245	154961											
OLFM4	10562	broad.mit.edu	37	chr13	53616000	53616000	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtagtggaagaagatggtgtGatactactcagggaattggc	15	4	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53616000	C	C	53616000	1	2	192	0	1	0	0	0	0	0	0	0	10950	1305	45	4		4	OLFM4	13	53616000	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	15296032	53616000	61553878	246	154962											
TGDS	23483	broad.mit.edu	37	chr13	95228541	95228541	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaaatttttctgacttgcCcccaaaatgattaattcaaa	3	8	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95228541	T	T	95228541	1	4	192	0	1	0	0	0	0	0	0	0	15937	638	22	4		4	TGDS	13	95228541	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	41612541	95228541	19941337	247	154963											
TMTC4	84899	broad.mit.edu	37	chr13	101278052	101278052	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttactgtatttgaacagCcaaagacagcagctcctcag	8	11	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101278052	A	A	101278052	3	1	192	1	0	0	0	0	1	0	0	0	16386	739	26	3	625	3	TMTC4	13	101278052	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	6049511	101278052	13891826	248	154964											
TTC5	91875	broad.mit.edu	37	chr14	20767602	20767602	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttgcaaggagactttgttCctgcactgcaaataggaagg	11	7	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20767602	A	A	20767602	3	1	192	1	0	0	0	0	1	0	0	0	16837	854	30	3	948	3	TTC5	14	20767602	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08		20767602	86581938	249	154965											
DCAF11	80344	broad.mit.edu	37	chr14	24592135	24592135	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggaggtgagggatagtttaGatgtcttgtggtggtccctc	17	5	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24592135	A	A	24592135	1	1	192	0	1	0	0	0	0	0	0	0	4295	957	33	4		4	DCAF11	14	24592135	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	3824533	24592135	82757405	250	154966											
ARID4A	5926	broad.mit.edu	37	chr14	58814512	58814512	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagatcaagaaatgcctttAacagaagtgaagagtgaacc	9	6	1	6			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58814512	T	T	58814512	3	4	192	1	0	0	0	0	1	0	0	0	921	359	13	5	1374	5	ARID4A	14	58814512	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	34222377	58814512	48535028	251	154967											
ZFYVE1	53349	broad.mit.edu	37	chr14	73464506	73464507	+	Intron	DNP	CC	AA	AA													ggttgagctgtgacactgtaCcccatctctcaccagagccc							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	73464507	AA	AA	73464506	1	1	192	0	1	0	0	0	0	0	0	0	17789	522	18	3		3	ZFYVE1	14	73464506	Intron	DNP	CC	TCGA-64-5815-01A-01D-1625-08	14649994	73464506	33885034	252	154968											
LIN52	91750	broad.mit.edu	37	chr14	74551696	74551696	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggcgtctcccacagacGgtaagagccggcttagagat	13	10	1	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74551696	A	A	74551696	3	1	192	1	0	0	0	0	1	0	0	0	8881	1130	39	4	33	4	LIN52	14	74551696	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	1087190	74551696	32797844	253	154969											
MLH3	27030	broad.mit.edu	37	chr14	75515969	75515969	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatcagcttcacaagctttCagggcttttccactctgaaa	6	12	4	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75515969	A	A	75515969	2	1	192	1	0	0	0	0	0	0	0	1	9711	813	29	3		3	MLH3	14	75515969	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	964273	75515969	31833571	254	154970											
ISM2	145501	broad.mit.edu	37	chr14	77951118	77951118	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctctggggtcctgggagGggtggcgttgcctggggtca	19	9	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77951118	T	T	77951118	3	4	192	1	0	0	0	0	1	0	0	0	7931	1232	43	2	1453	2	ISM2	14	77951118	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	2435149	77951118	29398422	255	154971											
KCNK10	54207	broad.mit.edu	37	chr14	88729653	88729653	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgctctcaaagggctgctCcaatgcccggaagacaagac	11	13	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88729653	T	T	88729653	3	4	192	1	0	0	0	0	1	0	0	0	8129	864	30	4	1360	4	KCNK10	14	88729653	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	10778535	88729653	18619887	256	154972											
TDRD9	122402	broad.mit.edu	37	chr14	104452579	104452579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatctcctggaggaacCggtgataactaaggatatat	9	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104452579	T	T	104452579	3	4	192	1	0	0	0	0	1	0	0	0	15858	652	23	4	1067	4	TDRD9	14	104452579	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	15722926	104452579	2896961	257	154973											
JAG2	3714	broad.mit.edu	37	chr14	105622114	105622114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccagccgtccatgcaggCcttgttgccgtactggtcgc	11	15	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105622114	A	A	105622114	3	1	192	1	0	0	0	0	1	0	0	0	8005	739	26	3	3120	3	JAG2	14	105622114	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	1169535	105622114	1727426	258	154974											
C15orf2	23742	broad.mit.edu	37	chr15	24923058	24923058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagacacctccactttaGtgaacagtgcctctacagca	6	15	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24923058	T	T	24923058	3	4	192	1	0	0	0	0	1	0	0	0	1797	1029	36	3	2046	3	C15orf2	15	24923058	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08		24923058	77608334	259	154975											
OCA2	4948	broad.mit.edu	37	chr15	28116372	28116372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacaccaccaggacaatGgcggctatgaggcgctgctc	11	15	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28116372	T	T	28116372	2	4	192	1	0	0	0	0	0	0	0	1	10910	1335	47	2		2	OCA2	15	28116372	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	3193314	28116372	74415020	260	154976											
RYR3	6263	broad.mit.edu	37	chr15	33893671	33893671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatggggttgcagtgagaGccaaccagaatctgatctgt	13	8	2	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33893671	T	T	33893671	3	4	192	1	0	0	0	0	1	0	0	0	13881	971	34	3	1906	3	RYR3	15	33893671	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	5777299	33893671	68637721	261	154977											
AVEN	57099	broad.mit.edu	37	chr15	34295296	34295296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccactttcattattgaCctctttttcaatatcttgat	2	11	5	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34295296	A	A	34295296	3	1	192	1	0	0	0	0	1	0	0	0	1231	507	18	3	726	3	AVEN	15	34295296	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	401625	34295296	68236096	262	154978											
ACTC1	70	broad.mit.edu	37	chr15	35083387	35083387	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaataccagggtacatAgtggtgcctccagataagac	10	10	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35083387	T	T	35083387	2	4	192	1	0	0	0	0	0	0	0	1	195	407	15	5		5	ACTC1	15	35083387	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	788091	35083387	67448005	263	154979											
MEIS2	4212	broad.mit.edu	37	chr15	37184416	37184416	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgtccgccaacattgggAtctacagaatttaacattgt	7	10	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37184416	T	T	37184416	3	4	192	1	0	0	0	0	1	0	0	0	9561	330	12	5	45	5	MEIS2	15	37184416	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	2101029	37184416	65346976	264	154980											
EIF2AK4	440275	broad.mit.edu	37	chr15	40265942	40265942	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaggagcttttggagctGtcatcaaggtgtggtacaga	14	5	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40265942	A	A	40265942	3	1	192	1	0	0	0	0	1	0	0	0	5039	1377	48	4	1852	4	EIF2AK4	15	40265942	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	3081526	40265942	62265450	265	154981											
CAPN3	825	broad.mit.edu	37	chr15	42646599	42646599	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttcaagatgtaaatgtcAaggaatgagttggcaaatca	9	6	3	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42646599	G	G	42646599	1	3	192	0	1	0	0	0	0	0	0	0	2654	145	5	5		5	CAPN3	15	42646599	5'UTR	SNP	A	TCGA-64-5815-01A-01D-1625-08	2380657	42646599	59884793	266	154982											
CATSPER2	117155	broad.mit.edu	37	chr15	43927466	43927466	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatgcagttattaaatgaaTgaattatctctcaaagccaa	5	6	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43927466	A	A	43927466	1	1	192	0	1	0	0	0	0	0	0	0	2714	1479	51	5		5	CATSPER2	15	43927466	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	1280867	43927466	58603926	267	154983											
DUOX2	50506	broad.mit.edu	37	chr15	45399643	45399643	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtatttcggatgtcttcaatCtccttcttggagaacagcct	8	10	4	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45399643	A	A	45399643	3	1	192	1	0	0	0	0	1	0	0	0	4841	912	32	3	3137	3	DUOX2	15	45399643	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	1472177	45399643	57131749	268	154984											
PRTG	283659	broad.mit.edu	37	chr15	55974514	55974514	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggagaagaagtaacaacTgcgccaataaaacgtcataa	9	7	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55974514	G	G	55974514	1	3	192	0	1	0	0	0	0	0	0	0	12744	1595	55	5		5	PRTG	15	55974514	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	10574871	55974514	46556878	269	154985											
SLTM	79811	broad.mit.edu	37	chr15	59182335	59182335	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaactagtacctaattcaCtgttatctttcagggacact	5	9	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59182335	A	A	59182335	1	1	192	0	1	0	0	0	0	0	0	0	14868	580	20	3		3	SLTM	15	59182335	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	3207821	59182335	43349057	270	154986											
TLN2	83660	broad.mit.edu	37	chr15	63076138	63076138	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgcacacacacactggtgCccactcctgggtatttcttc	8	14	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63076138	T	T	63076138	1	4	192	0	1	0	0	0	0	0	0	0	16071	754	26	4		4	TLN2	15	63076138	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	3893803	63076138	39455254	271	154987											
CRABP1	1381	broad.mit.edu	37	chr15	78635982	78635982	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acccttgaccctgaaataatCctgaagttcccccagagggg	9	13	0	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78635982	T	T	78635982	1	4	192	0	1	0	0	0	0	0	0	0	3875	870	30	4		4	CRABP1	15	78635982	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	15559844	78635982	23895410	272	154988											
BTBD1	53339	broad.mit.edu	37	chr15	83689301	83689301	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaactctttatgcttacaaTgctactaaggggccttctga	8	9	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83689301	G	G	83689301	1	3	192	0	1	0	0	0	0	0	0	0	1546	1479	51	5		5	BTBD1	15	83689301	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	5053319	83689301	18842091	273	154989											
WDR93	56964	broad.mit.edu	37	chr15	90272189	90272189	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggttttaggaccaagacTctgccagcagctctccttgc	9	13	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90272189	A	A	90272189	1	1	192	0	1	0	0	0	0	0	0	0	17467	1566	54	5		5	WDR93	15	90272189	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	6582888	90272189	12259203	274	154990											
FURIN	5045	broad.mit.edu	37	chr15	91424922	91424922	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggtcttcgtcactgtcttCctggtcctgcagctgcgctc	10	15	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91424922	T	T	91424922	2	4	192	1	0	0	0	0	0	0	0	1	6159	854	30	4		4	FURIN	15	91424922	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	1152733	91424922	11106470	275	154991											
PDXDC1	23042	broad.mit.edu	37	chr16	15083107	15083107	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccttgagctccttggctGctttgcttttgggcacctgg	13	12	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15083107	T	T	15083107	1	4	192	0	1	0	0	0	0	0	0	0	11790	1334	46	3		3	PDXDC1	16	15083107	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08		15083107	75271646	276	154992											
JMJD5	79831	broad.mit.edu	37	chr16	27221911	27221911	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggaaagaggcctgcccGtggctccctcccagagcaac	11	17	0	2	rs145879289	byFrequency	TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27221911	A	A	27221911	3	1	192	1	0	0	0	0	1	0	0	0	8022	1145	40	4	587	4	JMJD5	16	27221911	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	12138804	27221911	63132842	277	154993											
ATXN2L	11273	broad.mit.edu	37	chr16	28845864	28845864	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctcggaccaacaccagccAgcctcagccccgccgatgat	9	19	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28845864	T	T	28845864	2	4	192	1	0	0	0	0	0	0	0	1	1216	175	7	5		5	ATXN2L	16	28845864	Silent	SNP	A	TCGA-64-5815-01A-01D-1625-08	1623953	28845864	61508889	278	154994											
PRR14	78994	broad.mit.edu	37	chr16	30663056	30663056	+	Intron	DEL	G	-	-													gggatcctggcgaccgtgccGggaaactacagagccagcga							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	30663056	-	-	30663056	6	5	192	0	1	1	0	1	0	0	0	0	12692	1131	39	0		0	PRR14	16	30663056	Intron	DEL	G	TCGA-64-5815-01A-01D-1625-08	1817192	30663056	59691697	279	154995											
SRCAP	10847	broad.mit.edu	37	chr16	30748494	30748494	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggactggtggaggcaCccaccggcgcagtaaaaagg	16	10	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30748494	T	T	30748494	3	4	192	1	0	0	0	0	1	0	0	0	15253	507	18	4	7259	4	SRCAP	16	30748494	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	85438	30748494	59606259	280	154996											
PRSS53	339105	broad.mit.edu	37	chr16	31106838	31106838	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaactatttcaggcaccaTtcgggctgcagcctcccatc	8	14	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31106838	C	C	31106838	1	2	192	0	1	0	0	0	0	0	0	0	12738	1508	52	5		5	PRSS53	16	31106838	5'Flank	SNP	T	TCGA-64-5815-01A-01D-1625-08	358344	31106838	59247915	281	154997											
TRIM72	493829	broad.mit.edu	37	chr16	31234173	31234173	+	Frame_Shift_Del	DEL	C	-	-													agaagatcctggcagagtctCccccacccgcccgtctggac							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31234173	-	-	31234173	7	5	192	1	0	1	0	1	0	0	0	0	16670	855	30	0	784	0	TRIM72	16	31234173	Frame_Shift_Del	DEL	C	TCGA-64-5815-01A-01D-1625-08	127335	31234173	59120580	282	154998											
ITGAD	3681	broad.mit.edu	37	chr16	31435109	31435110	+	Intron	DNP	CC	TT	TT													caaacctgaccatattttttCctatggctccctcctcaggg							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31435110	TT	TT	31435109	1	4	192	0	1	0	0	0	0	0	0	0	7954	870	30	4		4	ITGAD	16	31435109	Intron	DNP	CC	TCGA-64-5815-01A-01D-1625-08	200936	31435109	58919644	283	154999											
TGFB1I1	7041	broad.mit.edu	37	chr16	31488202	31488202	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttccacgagcgcgagggCcgcccctactgccgccggga	15	16	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31488202	A	A	31488202	2	1	192	1	0	0	0	0	0	0	0	1	15940	726	26	3		3	TGFB1I1	16	31488202	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	53093	31488202	58866551	284	155000											
TMEM208	29100	broad.mit.edu	37	chr16	67263062	67263062	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggccctgggtggctctgtCagggtgcacagcccctcatg	14	14	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67263062	A	A	67263062	1	1	192	0	1	0	0	0	0	0	0	0	16256	841	29	3		3	TMEM208	16	67263062	3'UTR	SNP	C	TCGA-64-5815-01A-01D-1625-08	35774860	67263062	23091691	285	155001											
GFOD2	81577	broad.mit.edu	37	chr16	67719580	67719580	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagaactcgggcggagctGccagtcccaaacacgcccac	10	17	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67719580	A	A	67719580	2	1	192	1	0	0	0	0	0	0	0	1	6408	1306	46	4		4	GFOD2	16	67719580	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	456518	67719580	22635173	286	155002											
DHX38	9785	broad.mit.edu	37	chr16	72139923	72139923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttcaaccccaggattgGcatggatgctctgcagatct	11	11	4	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72139923	T	T	72139923	3	4	192	1	0	0	0	0	1	0	0	0	4551	1203	42	3	2577	3	DHX38	16	72139923	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	4420343	72139923	18214830	287	155003											
MYH13	8735	broad.mit.edu	37	chr17	10219147	10219147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctaccaaacagatgtggcCcccacgtcagtgttactgac	8	15	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10219147	A	A	10219147	1	1	192	0	1	0	0	0	0	0	0	0	10126	638	22	2		2	MYH13	17	10219147	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08		10219147	70976063	288	155004											
MYH8	4626	broad.mit.edu	37	chr17	10315771	10315771	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctgctggttgatgcgGgtgaccatccacaggaacat	12	11	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10315771	T	T	10315771	2	4	192	1	0	0	0	0	0	0	0	1	10135	1219	43	2		2	MYH8	17	10315771	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	96624	10315771	70879439	289	155005											
DNAH9	1770	broad.mit.edu	37	chr17	11572727	11572727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttggcaaacatgcggcGcacactcatggagagagtcc	12	10	1	2	rs61745415	byFrequency;by1000genomes	TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11572727	T	T	11572727	3	4	192	1	0	0	0	0	1	0	0	0	4648	1087	38	3	3035	3	DNAH9	17	11572727	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	1256956	11572727	69622483	290	155006											
ULK2	9706	broad.mit.edu	37	chr17	19699332	19699332	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctacactaatgtagtcttgCtgcttttataacagaaatct	6	8	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19699332	T	T	19699332	1	4	192	0	1	0	0	0	0	0	0	0	17102	812	28	4		4	ULK2	17	19699332	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	8126605	19699332	61495878	291	155007											
ERBB2	2064	broad.mit.edu	37	chr17	37864628	37864628	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacaaccaagtgaggcagGtcccactgcagaggctgcgg	13	13	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37864628	A	A	37864628	3	1	192	1	0	0	0	0	1	0	0	0	5248	1261	44	4	290	4	ERBB2	17	37864628	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	18165296	37864628	43330582	292	155008											
GRB7	2886	broad.mit.edu	37	chr17	37899321	37899321	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgggtaagtcaggtgcAtggaactatccgggctggga	16	8	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37899321	G	G	37899321	1	3	192	0	1	0	0	0	0	0	0	0	6825	232	8	5		5	GRB7	17	37899321	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	34693	37899321	43295889	293	155009											
TEX14	56155	broad.mit.edu	37	chr17	56679854	56679854	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgacttaacaatatcataGtaaggtttcggaagcctgac	8	9	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56679854	T	T	56679854	4	4	192	1	0	0	0	0	0	1	0	0	15900	1024	36	3	3129	3	TEX14	17	56679854	Nonsense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	18780533	56679854	24515356	294	155010											
DCAF7	10238	broad.mit.edu	37	chr17	61657267	61657267	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagtgaatctcgtgtctgGccacgtgaagacccagctga	13	11	2	4			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61657267	A	A	61657267	3	1	192	1	0	0	0	0	1	0	0	0	4308	1203	42	4	505	4	DCAF7	17	61657267	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	4977413	61657267	19537943	295	155011											
SCN4A	6329	broad.mit.edu	37	chr17	62018277	62018277	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctcctccgggcttggcgAgctgctgttcccattctcgt	10	15	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62018277	T	T	62018277	3	4	192	1	0	0	0	0	1	0	0	0	14033	304	11	5	149	5	SCN4A	17	62018277	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	361010	62018277	19176933	296	155012											
APOH	350	broad.mit.edu	37	chr17	64210617	64210617	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccatctatacactgagcAtcctctgtatagctacactt	6	12	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64210617	T	T	64210617	3	4	192	1	0	0	0	0	1	0	0	0	806	214	8	5	109	5	APOH	17	64210617	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	2192340	64210617	16984593	297	155013											
ABCA5	23461	broad.mit.edu	37	chr17	67250679	67250679	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttgcttaatttacactgTgaaggaagtggcaagtacat	9	5	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67250679	A	A	67250679	1	1	192	0	1	0	0	0	0	0	0	0	35	1711	59	5		5	ABCA5	17	67250679	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	3040062	67250679	13944531	298	155014											
PRPSAP1	5635	broad.mit.edu	37	chr17	74324814	74324814	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacatggcaactccaggccTgggtgcacagtagcattttt	10	10	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74324814	A	A	74324814	2	1	192	1	0	0	0	0	0	0	0	1	12687	1567	55	5		5	PRPSAP1	17	74324814	Silent	SNP	T	TCGA-64-5815-01A-01D-1625-08	7074135	74324814	6870396	299	155015											
AZI1	22994	broad.mit.edu	37	chr17	79170678	79170678	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaccggtgggcctggcctCagcaggtaggaggctagcag	18	10	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79170678	A	A	79170678	1	1	192	0	1	0	0	0	0	0	0	0	1245	841	29	3		3	AZI1	17	79170678	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	4845864	79170678	2024532	300	155016											
DSG1	1828	broad.mit.edu	37	chr18	28906921	28906921	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggatcaagttcgcagcaGcctgtcgtgaaggtgaagac	13	8	1	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28906921	A	A	28906921	3	1	192	1	0	0	0	0	1	0	0	0	4816	971	34	4	179	4	DSG1	18	28906921	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08		28906921	49170327	301	155017											
ASXL3	80816	broad.mit.edu	37	chr18	31322839	31322839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacattatatttttttttctGtcctccttttagattcagct	3	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31322839	T	T	31322839	1	4	192	0	1	0	0	0	0	0	0	0	1072	1392	48	3		3	ASXL3	18	31322839	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	2415918	31322839	46754409	302	155018											
DOT1L	84444	broad.mit.edu	37	chr19	2223212	2223212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaggagcctcctggggcgGgggggctctcctgccttggg	19	12	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2223212	T	T	2223212	1	4	192	0	1	0	0	0	0	0	0	0	4749	1247	43	2		2	DOT1L	19	2223212	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08		2223212	56905771	303	155019											
CELF5	60680	broad.mit.edu	37	chr19	3273914	3273914	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcggacagtgaaagccgCggaggtagttgtcatctctc	13	11	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3273914	T	T	3273914	2	4	192	1	0	0	0	0	0	0	0	1	3249	755	27	4		4	CELF5	19	3273914	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	1050702	3273914	55855069	304	155020											
MATK	4145	broad.mit.edu	37	chr19	3779355	3779355	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacgaccccagtgccgcagCaccctgagagtcccacttac	9	18	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3779355	A	A	3779355	1	1	192	0	1	0	0	0	0	0	0	0	9424	725	25	3		3	MATK	19	3779355	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	505441	3779355	55349628	305	155021											
EMR1	2015	broad.mit.edu	37	chr19	6903764	6903764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatattttgcaaagggaagCatgattttgttggctcattg	10	6	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6903764	A	A	6903764	1	1	192	0	1	0	0	0	0	0	0	0	5146	725	25	3		3	EMR1	19	6903764	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	3124409	6903764	52225219	306	155022											
OR7E24	26648	broad.mit.edu	37	chr19	9361871	9361872	+	Nonsense_Mutation	DNP	CC	AA	AA													cctcgctgggctgttcctgtCcatgtacctggtcacggtgc							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	9361872	AA	AA	9361871	4	1	192	1	0	0	0	0	0	1	0	0	11315	855	30	3	154	3	OR7E24	19	9361871	Nonsense_Mutation	DNP	CC	TCGA-64-5815-01A-01D-1625-08	2458107	9361871	49767112	307	155023											
KRI1	65095	broad.mit.edu	37	chr19	10671747	10671747	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccactcgatgtagtcggcctCctcctgggcctgggggaaag	14	13	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10671747	G	G	10671747	3	3	192	1	0	0	0	0	1	0	0	0	8515	864	30	4	1564	4	KRI1	19	10671747	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	1309876	10671747	48457236	308	155024											
ZNF253	56242	broad.mit.edu	37	chr19	20003092	20003092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacaaatgtgaagaatgtGgcaaagcctttcacctatcc	7	11	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20003092	T	T	20003092	3	4	192	1	0	0	0	0	1	0	0	0	17923	1348	47	2	1050	2	ZNF253	19	20003092	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	9331345	20003092	39125891	309	155025											
ZNF492	57615	broad.mit.edu	37	chr19	22817321	22817321	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagagaggggaaggggctgGttggaaccggtggcaagagg	22	5	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22817321	T	T	22817321	1	4	192	0	1	0	0	0	0	0	0	0	18070	1276	44	3		3	ZNF492	19	22817321	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	2814229	22817321	36311662	310	155026											
ZNF536	9745	broad.mit.edu	37	chr19	30936248	30936248	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgggcagccagagagaCctgccaagtaagctcgaccc	12	12	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30936248	T	T	30936248	2	4	192	1	0	0	0	0	0	0	0	1	18101	506	18	4		4	ZNF536	19	30936248	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	8118927	30936248	28192735	311	155027											
TSHZ3	57616	broad.mit.edu	37	chr19	31768002	31768002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcaggaggtgctggggGttccagtttgactggcggcc	18	8	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31768002	T	T	31768002	3	4	192	1	0	0	0	0	1	0	0	0	16750	1252	44	3	552	3	TSHZ3	19	31768002	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	831754	31768002	27360981	312	155028											
SLC7A10	56301	broad.mit.edu	37	chr19	33702524	33702524	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagccacgagagcagctcaTagtctccatctcttgtgtct	8	14	4	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33702524	A	A	33702524	1	1	192	0	1	0	0	0	0	0	0	0	14807	1421	49	5		5	SLC7A10	19	33702524	Intron	SNP	T	TCGA-64-5815-01A-01D-1625-08	1934522	33702524	25426459	313	155029											
SIPA1L3	23094	broad.mit.edu	37	chr19	38600929	38600929	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttccaggagcctggcgcGctaccgttcacccccaagaa	9	16	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38600929	A	A	38600929	2	1	192	1	0	0	0	0	0	0	0	1	14444	1074	38	4		4	SIPA1L3	19	38600929	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	4898405	38600929	20528054	314	155030											
RINL	126432	broad.mit.edu	37	chr19	39359959	39359959	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggaggcgcgggcctcGgagctgagcccccggggagc	20	13	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39359959	A	A	39359959	2	1	192	1	0	0	0	0	0	0	0	1	13486	1103	39	4		4	RINL	19	39359959	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08	759030	39359959	19769024	315	155031											
SUPT5H	6829	broad.mit.edu	37	chr19	39963500	39963501	+	Missense_Mutation	DNP	AG	TT	TT													gcggcagtggtggcatgagcAggggccggggccggagggac							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	39963501	TT	TT	39963500	3	4	192	1	0	0	0	0	1	0	0	0	15517	179	7	5	2168	5	SUPT5H	19	39963500	Missense_Mutation	DNP	AG	TCGA-64-5815-01A-01D-1625-08	603541	39963500	19165483	316	155032											
GPR4	2828	broad.mit.edu	37	chr19	46094525	46094525	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcaggatgccccggtaCgacagcagcatgagcgccca	13	16	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46094525	A	A	46094525	2	1	192	1	0	0	0	0	0	0	0	1	6759	523	19	3		3	GPR4	19	46094525	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	6131025	46094525	13034458	317	155033											
EML2	24139	broad.mit.edu	37	chr19	46124786	46124786	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaccccagaggaccacCcgccgatcacggccccctcc	8	21	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46124786	A	A	46124786	2	1	192	1	0	0	0	0	0	0	0	1	5139	610	22	2		2	EML2	19	46124786	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	30261	46124786	13004197	318	155034											
CCDC9	26093	broad.mit.edu	37	chr19	47774981	47774981	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgtgtgtgtgtgTgtgtgtgtgcgcgcgcgcgc	20	6	0	0	rs138990062	by1000genomes	TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47774981	C	C	47774981	1	2	192	0	1	0	0	0	0	0	0	0	2895	1711	59	5		5	CCDC9	19	47774981	3'UTR	SNP	T	TCGA-64-5815-01A-01D-1625-08	1650195	47774981	11354002	319	155035											
MYBPC2	4606	broad.mit.edu	37	chr19	50957496	50957496	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccctgaggcctcgaggggCcacctgactctcctgccccc	10	20	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50957496	T	T	50957496	1	4	192	0	1	0	0	0	0	0	0	0	10106	754	26	4		4	MYBPC2	19	50957496	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	3182515	50957496	8171487	320	155036											
ACPT	93650	broad.mit.edu	37	chr19	51298092	51298092	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgactccgcccacctgcccCtgcctctcagcctccccggg	8	22	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51298092	T	T	51298092	2	4	192	1	0	0	0	0	0	0	0	1	168	680	24	4		4	ACPT	19	51298092	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	340596	51298092	7830891	321	155037											
SIGLEC7	27036	broad.mit.edu	37	chr19	51647485	51647485	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaggctccaggagacaCcacagggaaaggtcatgggg	16	10	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51647485	T	T	51647485	1	4	192	0	1	0	0	0	0	0	0	0	14426	522	18	4		4	SIGLEC7	19	51647485	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	349393	51647485	7481498	322	155038											
CD33	945	broad.mit.edu	37	chr19	51728785	51728785	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagggataatggttcatacTtctttcggatggagagagga	15	4	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51728785	G	G	51728785	3	3	192	1	0	0	0	0	1	0	0	0	3035	1609	56	5	355	5	CD33	19	51728785	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	81300	51728785	7400198	323	155039											
LILRB2	10288	broad.mit.edu	37	chr19	54780244	54780244	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaattacctccactgcAggcctctgtctgtgggctct	11	13	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54780244	T	T	54780244	3	4	192	1	0	0	0	0	1	0	0	0	8863	188	7	5	262	5	LILRB2	19	54780244	Missense_Mutation	SNP	A	TCGA-64-5815-01A-01D-1625-08	3051459	54780244	4348739	324	155040											
LILRB4	11006	broad.mit.edu	37	chr19	55179543	55179543	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catggaagctgcctccagtaGacatcactgaaccccagcca	8	15	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55179543	T	T	55179543	1	4	192	0	1	0	0	0	0	0	0	0	8865	957	33	3		3	LILRB4	19	55179543	3'UTR	SNP	G	TCGA-64-5815-01A-01D-1625-08	399299	55179543	3949440	325	155041											
NLRP9	338321	broad.mit.edu	37	chr19	56244334	56244334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttatgagttttggatgcCgcaacataaaatagtgtttt	9	5	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56244334	T	T	56244334	3	4	192	1	0	0	0	0	1	0	0	0	10579	652	23	4	2144	4	NLRP9	19	56244334	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	1064791	56244334	2884649	326	155042											
ZNF419	79744	broad.mit.edu	37	chr19	58004131	58004131	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgctagcagccccaggcActaattactgggtgtgttag	11	10	1	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58004131	G	G	58004131	1	3	192	0	1	0	0	0	0	0	0	0	18023	174	6	5		5	ZNF419	19	58004131	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	1759797	58004131	1124852	327	155043											
PLK1S1	55857	broad.mit.edu	37	chr20	21143719	21143721	+	In_Frame_Del	DEL	CCA	-	-													gcaagaaagagttgccctatCcactgaaaaaaattgtattt							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21143721	-	-	21143719	7	5	192	1	0	1	0	1	0	0	0	0	12190	855	30	0	1293	0	PLK1S1	20	21143719	In_Frame_Del	DEL	CCA	TCGA-64-5815-01A-01D-1625-08		21143719	41881801	328	155044											
ZNF341	84905	broad.mit.edu	37	chr20	32333151	32333151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtcttttttgagggcctaAcatgctcaggcactgtgctg	11	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32333151	G	G	32333151	1	3	192	0	1	0	0	0	0	0	0	0	17983	58	2	5		5	ZNF341	20	32333151	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	11189432	32333151	30692369	329	155045											
AHCY	191	broad.mit.edu	37	chr20	32879407	32879407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaaattcctcatctttaCcccctaaagccattcctctt	2	15	3	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32879407	A	A	32879407	1	1	192	0	1	0	0	0	0	0	0	0	409	522	18	3		3	AHCY	20	32879407	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	546256	32879407	30146113	330	155046											
RIMS4	140730	broad.mit.edu	37	chr20	43386385	43386385	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctccaactgaccgttcCgctcctgcagaccgatctcc	6	20	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43386385	T	T	43386385	3	4	192	1	0	0	0	0	1	0	0	0	13481	652	23	4	444	4	RIMS4	20	43386385	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	10506978	43386385	19639135	331	155047											
SEMG2	6407	broad.mit.edu	37	chr20	43835719	43835719	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccaacatcatctttgtaCtttccctgctcctcatcttg	4	15	4	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43835719	T	T	43835719	3	4	192	1	0	0	0	0	1	0	0	0	14158	565	20	4		4	SEMG2	20	43835719	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	449334	43835719	19189801	332	155048											
ZFP64	55734	broad.mit.edu	37	chr20	50769536	50769536	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctctagagcctcagtctTaaccatgtccccatggaact	6	15	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50769536	A	A	50769536	4	1	192	1	0	0	0	0	0	1	0	0	17778	1763	61	5	2045	5	ZFP64	20	50769536	Nonsense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	6933817	50769536	12255984	333	155049											
CASS4	57091	broad.mit.edu	37	chr20	55027579	55027579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgatggctctgcagcaCaaggtggtcagctctgtcgc	13	11	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55027579	A	A	55027579	3	1	192	1	0	0	0	0	1	0	0	0	2709	477	17	3	1365	3	CASS4	20	55027579	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	4258043	55027579	7997941	334	155050											
PPDPF	79144	broad.mit.edu	37	chr20	62153051	62153051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgacccgggtcattggtGggccagcttctttttcggga	15	10	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62153051	T	T	62153051	3	4	192	1	0	0	0	0	1	0	0	0	12402	1357	47	2	174	2	PPDPF	20	62153051	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	7125472	62153051	872469	335	155051											
TIAM1	7074	broad.mit.edu	37	chr21	32617938	32617938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgttgtggtctatccCagacctgccgtcgctctcgt	11	13	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32617938	A	A	32617938	3	1	192	1	0	0	0	0	1	0	0	0	16013	594	21	2	3417	2	TIAM1	21	32617938	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08		32617938	15511957	336	155052											
LSS	4047	broad.mit.edu	37	chr21	47626550	47626550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacagtgctagccagcccCgggtttgcgcgccgcagtgc	13	16	0	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47626550	A	A	47626550	1	1	192	0	1	0	0	0	0	0	0	0	9152	667	23	1		1	LSS	21	47626550	Intron	SNP	C	TCGA-64-5815-01A-01D-1625-08	15008612	47626550	503345	337	155053											
PCNT	5116	broad.mit.edu	37	chr21	47746331	47746331	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaaaacaaaaggtgacagttCgcattcggagaaaaagacgg	11	6	0	3			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47746331	G	G	47746331	3	3	192	1	0	0	0	0	1	0	0	0	11684	893	31	4	101	4	PCNT	21	47746331	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	119781	47746331	383564	338	155054											
GNAZ	2781	broad.mit.edu	37	chr22	23438412	23438412	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgtcgaggacatcctgcGctcccgggacatgaccacgg	12	15	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23438412	C	C	23438412	3	2	192	1	0	0	0	0	1	0	0	0	6578	1087	38	4	532	4	GNAZ	22	23438412	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08		23438412	27866154	339	155055											
C22orf43	51233	broad.mit.edu	37	chr22	23964346	23964346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaggcatactaaactcaGgttgtcctcagaagaacctg	10	9	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23964346	T	T	23964346	3	4	192	1	0	0	0	0	1	0	0	0	2172	991	35	2	409	2	C22orf43	22	23964346	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	525934	23964346	27340220	340	155056											
SEZ6L	23544	broad.mit.edu	37	chr22	26688407	26688407	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gagatgctagccctttgggtCcttacctcctgccctcagga	10	14	1	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26688407	G	G	26688407	3	3	192	1	0	0	0	0	1	0	0	0	14256	855	30	4	136	4	SEZ6L	22	26688407	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	2724061	26688407	24616159	341	155057											
SEZ6L	23544	broad.mit.edu	37	chr22	26743796	26743796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcacctaccagtgtgaccCcggctatgacatcgtgggga	11	12	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26743796	A	A	26743796	3	1	192	1	0	0	0	0	1	0	0	0	14256	623	22	2	2366	2	SEZ6L	22	26743796	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	55389	26743796	24560770	342	155058											
CRYBA4	1413	broad.mit.edu	37	chr22	27019232	27019232	+	Frame_Shift_Del	DEL	G	-	-													tgaggacggcttccagggccGgcggcacgagttcacggccg							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27019232	-	-	27019232	7	5	192	1	0	1	0	1	0	0	0	0	3941	1116	39	0	80	0	CRYBA4	22	27019232	Frame_Shift_Del	DEL	G	TCGA-64-5815-01A-01D-1625-08	275436	27019232	24285334	343	155059											
C22orf28	51493	broad.mit.edu	37	chr22	32783990	32783990	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaaggttctatcctttgaTcacagcaattggtctcagtt	7	10	3	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32783990	A	A	32783990	3	1	192	1	0	0	0	0	1	0	0	0	2162	1435	50	5	14	5	C22orf28	22	32783990	Missense_Mutation	SNP	T	TCGA-64-5815-01A-01D-1625-08	5764758	32783990	18520576	344	155060											
MYH9	4627	broad.mit.edu	37	chr22	36697184	36697184	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggacggacgccatggctcGggatcccagagggaaaggaa	16	9	0	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36697184	A	A	36697184	1	1	192	0	1	0	0	0	0	0	0	0	10136	1131	39	4		4	MYH9	22	36697184	Intron	SNP	G	TCGA-64-5815-01A-01D-1625-08	3913194	36697184	14607382	345	155061											
NUP50	10762	broad.mit.edu	37	chr22	45580569	45580570	+	3'UTR	INS	-	TT	TT													gctgcagaattattgccaagINSttgctgctgcttccaccgcc							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	45580570	TT	TT	45580569	6	5	192	0	1	1	1	0	0	0	0	0	10861	1044	36	0		0	NUP50	22	45580569	3'UTR	INS	-	TCGA-64-5815-01A-01D-1625-08	8883385	45580569	5723997	346	155062											
MAGEB18	286514	broad.mit.edu	37	chrX	26157198	26157198	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctacgcaggccactgtGgcagaaggagagtcaccctc	14	12	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26157198	T	T	26157198	2	4	192	1	0	0	0	0	0	0	0	1	9267	1335	47	2		2	MAGEB18	23	26157198	Silent	SNP	G	TCGA-64-5815-01A-01D-1625-08		26157198	129113362	347	155063											
SSX3	10214	broad.mit.edu	37	chrX	48206417	48206417	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagccatgcccatgttcgTgaaaggtcaccacgttctgc	9	14	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48206417	C	C	48206417	1	2	192	0	1	0	0	0	0	0	0	0	15323	1711	59	5		5	SSX3	23	48206417	3'UTR	SNP	T	TCGA-64-5815-01A-01D-1625-08	22049219	48206417	107064143	348	155064											
CACNA1F	778	broad.mit.edu	37	chrX	49063047	49063048	+	Frame_Shift_Del	DEL	GC	-	-													aaatcctcacaactgccctgGcgctgcagacactggatggt					rs150889699		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49063048	-	-	49063047	7	5	192	1	0	1	0	1	0	0	0	0	2569	1190	42	0	515	0	CACNA1F	23	49063047	Frame_Shift_Del	DEL	GC	TCGA-64-5815-01A-01D-1625-08	856630	49063047	106207513	349	155065											
VSIG4	11326	broad.mit.edu	37	chrX	65253200	65253200	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctctgataagcacatatAcctgtggagagcctctgtat	8	10	2	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65253200	G	G	65253200	1	3	192	0	1	0	0	0	0	0	0	0	17352	406	14	5		5	VSIG4	23	65253200	Intron	SNP	A	TCGA-64-5815-01A-01D-1625-08	16190153	65253200	90017360	350	155066											
ZCCHC13	389874	broad.mit.edu	37	chrX	73524138	73524138	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcgcgtgtggacactctGgccattgggctcggggatgc	15	11	2	0			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73524138	A	A	73524138	3	1	192	1	0	0	0	0	1	0	0	0	17708	1348	47	4	39	4	ZCCHC13	23	73524138	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	8270938	73524138	81746422	351	155067											
KLHL4	56062	broad.mit.edu	37	chrX	86869441	86869441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcctatttccaggttgGttctcagcgcagtgtctgat	9	9	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86869441	T	T	86869441	3	4	192	1	0	0	0	0	1	0	0	0	8462	1261	44	3	605	3	KLHL4	23	86869441	Missense_Mutation	SNP	G	TCGA-64-5815-01A-01D-1625-08	13345303	86869441	68401119	352	155068											
PCDH11X	27328	broad.mit.edu	37	chrX	91238191	91238192	+	Intron	DNP	GG	TT	TT													tcttttttcccccagtcttaGgtaagaaggatgaatcgaag							TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	91238192	TT	TT	91238191	1	4	192	0	1	0	0	0	0	0	0	0	11602	1015	35	2		2	PCDH11X	23	91238191	Intron	DNP	GG	TCGA-64-5815-01A-01D-1625-08	4368750	91238191	64032369	353	155069											
COL4A6	1288	broad.mit.edu	37	chrX	107464327	107464328	+	Intron	INS	-	A	A													acagggcgagactctgtctcINSaaaaaaaaaaatgcagaaat					rs76891094		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107464328	A	A	107464327	6	5	192	0	1	1	1	0	0	0	0	0	3727	841	29	0		0	COL4A6	23	107464327	Intron	INS	-	TCGA-64-5815-01A-01D-1625-08	16226136	107464327	47806233	354	155070											
MAGEC1	9947	broad.mit.edu	37	chrX	140993224	140993224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatgcctactgctgggatgCcgagtcttctccagagttcc	10	12	2	1			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140993224	T	T	140993224	3	4	192	1	0	0	0	0	1	0	0	0	9272	739	26	4	40	4	MAGEC1	23	140993224	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	33528897	140993224	14277336	355	155071											
MAGEA5	4104	broad.mit.edu	37	chrX	151283870	151283870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcacctcccccagggtgCctgggaccagaggagaggag	16	13	0	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151283870	A	A	151283870	3	1	192	1	0	0	0	0	1	0	0	0	9259	739	26	3	235	3	MAGEA5	23	151283870	Missense_Mutation	SNP	C	TCGA-64-5815-01A-01D-1625-08	10290646	151283870	3986690	356	155072											
F8	2157	broad.mit.edu	37	chrX	154159113	154159113	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctaccactctctgttgaCgatacattttttccccatga	4	13	1	2			TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154159113	T	T	154159113	2	4	192	1	0	0	0	0	0	0	0	1	5393	523	19	4		4	F8	23	154159113	Silent	SNP	C	TCGA-64-5815-01A-01D-1625-08	2875243	154159113	1111447	357	155073											
KIAA1751	85452	broad.mit.edu	37	chr1	1900276	1900276	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctcctcaaaggccctgCgtggagtcgcttctcagatg	11	14	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1900276	T	T	1900276	1	4	193	0	1	0	0	0	0	0	0	0	8326	783	27	4		4	KIAA1751	1	1900276	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08		1900276	247350345	1	155074											
CHD5	26038	broad.mit.edu	37	chr1	6208958	6208958	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgtttgggatctcgggcaGcggcgggttgaggcaatgca	17	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6208958	A	A	6208958	2	1	193	1	0	0	0	0	0	0	0	1	3359	962	34	4		4	CHD5	1	6208958	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	4308682	6208958	243041663	2	155075											
RERE	473	broad.mit.edu	37	chr1	8505745	8505745	+	Intron	DEL	T	-	-													cctgcggcaggaaccccaccTttttttttttatgttcgggg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8505745	-	-	8505745	6	5	193	0	1	1	0	1	0	0	0	0	13339	1624	56	0		0	RERE	1	8505745	Intron	DEL	T	TCGA-67-3770-01A-01D-0969-08	2296787	8505745	240744876	3	155076											
UBE4B	10277	broad.mit.edu	37	chr1	10093697	10093697	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcgagaacagaaggatctctCcttaacgcctttcaccatta	6	12	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10093697	G	G	10093697	1	3	193	0	1	0	0	0	0	0	0	0	17009	870	30	4		4	UBE4B	1	10093697	5'UTR	SNP	C	TCGA-67-3770-01A-01D-0969-08	1587952	10093697	239156924	4	155077											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17960914	17960914	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgatgccctcattccccGcaggaggctgtctctccttc	8	17	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17960914	T	T	17960914	1	4	193	0	1	0	0	0	0	0	0	0	897	1102	38	3		3	ARHGEF10L	1	17960914	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	7867217	17960914	231289707	5	155078											
UBR4	23352	broad.mit.edu	37	chr1	19437397	19437397	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcctttccacctgaagggGcccagggaaaatgaaatcaa	9	11	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19437397	A	A	19437397	1	1	193	0	1	0	0	0	0	0	0	0	17030	1218	42	4		4	UBR4	1	19437397	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1476483	19437397	229813224	6	155079											
KIAA0090	23065	broad.mit.edu	37	chr1	19564614	19564614	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttaatggtgtaggtctgaTtgaagcaagccagagagtcc	14	6	1	3	rs144675935		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19564614	C	C	19564614	3	2	193	1	0	0	0	0	1	0	0	0	8223	1493	52	5	1924	5	KIAA0090	1	19564614	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	127217	19564614	229686007	7	155080											
SLC9A1	6548	broad.mit.edu	37	chr1	27428248	27428248	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgggccttctgcctccGgagcagcatctggttccagg	13	15	2	0	rs137936112		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27428248	T	T	27428248	2	4	193	1	0	0	0	0	0	0	0	1	14823	1115	39	1		1	SLC9A1	1	27428248	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	7863634	27428248	221822373	8	155081											
CSMD2	114784	broad.mit.edu	37	chr1	34312507	34312507	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtattgggcactgaatccGcgctgccggtggttgccatc	14	11	0	1	rs143306375		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34312507	A	A	34312507	2	1	193	1	0	0	0	0	0	0	0	1	3979	1074	38	4		4	CSMD2	1	34312507	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	6884259	34312507	214938114	9	155082											
KIAA0467	23334	broad.mit.edu	37	chr1	43907004	43907004	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagtgttcggactcctggTggagctgagcgggcgccagg	19	9	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43907004	C	C	43907004	2	2	193	1	0	0	0	0	0	0	0	1	8248	1683	59	5		5	KIAA0467	1	43907004	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	9594497	43907004	205343617	10	155083											
FAF1	11124	broad.mit.edu	37	chr1	51425402	51425402	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaccggaaacccacgagGttggaagtgggaggggaaga	18	7	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51425402	T	T	51425402	1	4	193	0	1	0	0	0	0	0	0	0	5415	1276	44	3		3	FAF1	1	51425402	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	7518398	51425402	197825219	11	155084											
NEGR1	257194	broad.mit.edu	37	chr1	72740663	72740663	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacaagggaagtacattgcCatagttagtacgactgtgga	12	7	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72740663	A	A	72740663	1	1	193	0	1	0	0	0	0	0	0	0	10412	609	21	2		2	NEGR1	1	72740663	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	21315261	72740663	176509958	12	155085											
ELTD1	64123	broad.mit.edu	37	chr1	79357454	79357454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaattactcaaattatgtGggaggtgagttttcagtata	9	5	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79357454	T	T	79357454	1	4	193	0	1	0	0	0	0	0	0	0	5126	1363	47	2		2	ELTD1	1	79357454	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	6616791	79357454	169893167	13	155086											
FNDC7	163479	broad.mit.edu	37	chr1	109271181	109271181	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatctcactgggggcaaaatCagttttagaccaaatggcac	10	9	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109271181	A	A	109271181	1	1	193	0	1	0	0	0	0	0	0	0	6031	841	29	3		3	FNDC7	1	109271181	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	29913727	109271181	139979440	14	155087											
AMPD1	270	broad.mit.edu	37	chr1	115231457	115231457	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatgggacaaggactgtgcTgcgtgcatggctctcctgct	14	11	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115231457	C	C	115231457	1	2	193	0	1	0	0	0	0	0	0	0	585	1595	55	5		5	AMPD1	1	115231457	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	5960276	115231457	134019164	15	155088											
PDE4DIP	9659	broad.mit.edu	37	chr1	144855788	144855788	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgcttggcagggccgctctCcagaacatggtgaggaggga	17	9	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144855788	A	A	144855788	3	1	193	1	0	0	0	0	1	0	0	0	11737	856	30	3	291	3	PDE4DIP	1	144855788	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	29624331	144855788	104394833	16	155089											
LOC200030	200030	broad.mit.edu	37	chr1	148016411	148016411	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaatttctcagactcacctGggacctgttgcctcgtggtc	9	13	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148016411	A	A	148016411	2	1	193	1	0	0	0	0	0	0	0	1	8950	1335	47	4		4	LOC200030	1	148016411	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	3160623	148016411	101234210	17	155090											
OTUD7B	56957	broad.mit.edu	37	chr1	149915924	149915924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccccggagacctccagcCcatccatctggctcaggggg	13	16	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149915924	A	A	149915924	3	1	193	1	0	0	0	0	1	0	0	0	11413	624	22	2	171	2	OTUD7B	1	149915924	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	1899513	149915924	99334697	18	155091											
PLEKHO1	51177	broad.mit.edu	37	chr1	150129498	150129498	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagcagtgaatggagtggGcacatgttcaggcctcggga	16	7	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150129498	C	C	150129498	1	2	193	0	1	0	0	0	0	0	0	0	12179	1218	42	4		4	PLEKHO1	1	150129498	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	213574	150129498	99121123	19	155092											
SCNM1	79005	broad.mit.edu	37	chr1	151140046	151140046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggcgcggtgactcacGcctgtaatcccagcactttt	12	13	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151140046	T	T	151140046	1	4	193	0	1	0	0	0	0	0	0	0	14039	1102	38	3		3	SCNM1	1	151140046	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1010548	151140046	98110575	20	155093											
SPRR2D	6703	broad.mit.edu	37	chr1	153012823	153012823	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctgctgttgataagacatCctgctggagtctcaggatct	11	9	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153012823	T	T	153012823	1	4	193	0	1	0	0	0	0	0	0	0	15217	870	30	4		4	SPRR2D	1	153012823	5'UTR	SNP	C	TCGA-67-3770-01A-01D-0969-08	1872777	153012823	96237798	21	155094											
SLC27A3	11000	broad.mit.edu	37	chr1	153750884	153750884	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacagcagagggctggcagGagagggggctcatgtgactg	19	7	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153750884	T	T	153750884	1	4	193	0	1	0	0	0	0	0	0	0	14641	1189	41	3		3	SLC27A3	1	153750884	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	738061	153750884	95499737	22	155095											
GATAD2B	57459	broad.mit.edu	37	chr1	153825533	153825533	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagtcacagtagtcgtcaCagcatcttttgccccagtca	7	15	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153825533	T	T	153825533	1	4	193	0	1	0	0	0	0	0	0	0	6323	493	17	4		4	GATAD2B	1	153825533	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	74649	153825533	95425088	23	155096											
UBQLN4	56893	broad.mit.edu	37	chr1	156012101	156012101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccacagcctcagactccCtgggcaccccctaccactgc	6	23	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156012101	A	A	156012101	1	1	193	0	1	0	0	0	0	0	0	0	17025	696	24	2		2	UBQLN4	1	156012101	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	2186568	156012101	93238520	24	155097											
NTRK1	4914	broad.mit.edu	37	chr1	156845459	156845459	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatacttcagtgatgcctGtgaggggctatgctgggtca	13	8	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156845459	T	T	156845459	5	4	193	1	0	0	0	0	0	0	1	0	10801	1391	48	3	1678	3	NTRK1	1	156845459	Splice_Site	SNP	G	TCGA-67-3770-01A-01D-0969-08	833358	156845459	92405162	25	155098											
CD1C	911	broad.mit.edu	37	chr1	158262398	158262398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcagtgaggccagaagCctggctgtccagtcgcccca	12	15	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262398	A	A	158262398	3	1	193	1	0	0	0	0	1	0	0	0	3006	739	26	3	637	3	CD1C	1	158262398	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	1416939	158262398	90988223	26	155099											
SPTA1	6708	broad.mit.edu	37	chr1	158596702	158596702	+	Frame_Shift_Del	DEL	C	-	-													tcgtcttccaattgcaacttCcaagcagctattgccttagc							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158596702	-	-	158596702	7	5	193	1	0	1	0	1	0	0	0	0	15234	856	30	0	1547	0	SPTA1	1	158596702	Frame_Shift_Del	DEL	C	TCGA-67-3770-01A-01D-0969-08	334304	158596702	90653919	27	155100											
SPTA1	6708	broad.mit.edu	37	chr1	158613037	158613037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaagccagagtattccCccatctcaatgctagcaaaa	7	12	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158613037	A	A	158613037	1	1	193	0	1	0	0	0	0	0	0	0	15234	638	22	2		2	SPTA1	1	158613037	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	16335	158613037	90637584	28	155101											
SPTA1	6708	broad.mit.edu	37	chr1	158618526	158618526	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtcacaagaaagttatcatCactaccactcaccatcctcc	4	15	4	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158618526	A	A	158618526	1	1	193	0	1	0	0	0	0	0	0	0	15234	841	29	3		3	SPTA1	1	158618526	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	5489	158618526	90632095	29	155102											
SPTA1	6708	broad.mit.edu	37	chr1	158622310	158622310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaacatcatctagttccaCtccagtgttttctgcctttt	4	13	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158622310	A	A	158622310	3	1	193	1	0	0	0	0	1	0	0	0	15234	565	20	3	4057	3	SPTA1	1	158622310	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	3784	158622310	90628311	30	155103											
FCGR3A	2214	broad.mit.edu	37	chr1	161518542	161518542	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgccattcccagggagcctCaaagccagaatgagctcatt	9	13	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161518542	A	A	161518542	1	1	193	0	1	0	0	0	0	0	0	0	5841	841	29	3		3	FCGR3A	1	161518542	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	2896232	161518542	87732079	31	155104											
OLFML2B	25903	broad.mit.edu	37	chr1	161976113	161976113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcgtaggctgctgctgCatccctctgcagggctgagc	16	12	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161976113	A	A	161976113	3	1	193	1	0	0	0	0	1	0	0	0	10953	710	25	3	1575	3	OLFML2B	1	161976113	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	457571	161976113	87274508	32	155105											
DARS2	55157	broad.mit.edu	37	chr1	173797448	173797448	+	Intron	DEL	T	-	-													attttatcttaaaatgtttcTtttccccccccccattaatc							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	173797448	-	-	173797448	6	5	193	0	1	1	0	1	0	0	0	0	4275	1624	56	0		0	DARS2	1	173797448	Intron	DEL	T	TCGA-67-3770-01A-01D-0969-08	11821335	173797448	75453173	33	155106											
TNR	7143	broad.mit.edu	37	chr1	175331945	175331945	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagctgtctagtcgtcccActggagaagagaagaatcta	11	9	2	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175331945	C	C	175331945	3	2	193	1	0	0	0	0	1	0	0	0	16461	173	6	5	1408	5	TNR	1	175331945	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	1534497	175331945	73918676	34	155107											
ASTN1	460	broad.mit.edu	37	chr1	176998757	176998757	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaccaccttctgccacctCtatcattcctacctctacta	1	17	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176998757	A	A	176998757	1	1	193	0	1	0	0	0	0	0	0	0	1068	928	32	3		3	ASTN1	1	176998757	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1666812	176998757	72251864	35	155108											
CACNA1E	777	broad.mit.edu	37	chr1	181480554	181480554	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcttttgctttgaagctggGatcaaaattgtggccctggg	12	7	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181480554	A	A	181480554	2	1	193	1	0	0	0	0	0	0	0	1	2568	1161	41	4		4	CACNA1E	1	181480554	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	4481797	181480554	67770067	36	155109											
RGL1	23179	broad.mit.edu	37	chr1	183853736	183853736	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggacaccatgagacaaatCaagtagaaaaggattatctg	9	6	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183853736	A	A	183853736	1	1	193	0	1	0	0	0	0	0	0	0	13384	841	29	3		3	RGL1	1	183853736	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	2373182	183853736	65396885	37	155110											
CFH	3075	broad.mit.edu	37	chr1	196696128	196696128	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaatatttttattgtaacaAcaataattgcaactatattt	2	4	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196696128	G	G	196696128	1	3	193	0	1	0	0	0	0	0	0	0	3313	58	2	5		5	CFH	1	196696128	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	12842392	196696128	52554493	38	155111											
ASPM	259266	broad.mit.edu	37	chr1	197104226	197104226	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattaatttaacgtttacCttcagaaatatttgttttta	3	5	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197104226	A	A	197104226	3	1	193	1	0	0	0	0	1	0	0	0	1060	695	24	2	8356	2	ASPM	1	197104226	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	408098	197104226	52146395	39	155112											
LAX1	54900	broad.mit.edu	37	chr1	203743633	203743633	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcaaaaggacattccttGcttcaggggattatgcagac	11	8	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203743633	T	T	203743633	3	4	193	1	0	0	0	0	1	0	0	0	8720	1319	46	3	1084	3	LAX1	1	203743633	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	6639407	203743633	45506988	40	155113											
MDM4	4194	broad.mit.edu	37	chr1	204513588	204513588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacgacattgagttttgGgttcatttgtgttgtttcaa	11	4	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204513588	T	T	204513588	1	4	193	0	1	0	0	0	0	0	0	0	9507	1247	43	2		2	MDM4	1	204513588	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	769955	204513588	44737033	41	155114											
NFASC	23114	broad.mit.edu	37	chr1	204954991	204954991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaccactaacaactaacCcagccctgcctgcctgaccc	4	21	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204954991	A	A	204954991	1	1	193	0	1	0	0	0	0	0	0	0	10454	638	22	2		2	NFASC	1	204954991	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	441403	204954991	44295630	42	155115											
LEMD1	93273	broad.mit.edu	37	chr1	205388589	205388589	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattcttaacccttacattaTtggttaattatggcttttat	4	6	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205388589	C	C	205388589	1	2	193	0	1	0	0	0	0	0	0	0	8791	1508	52	5		5	LEMD1	1	205388589	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	433598	205388589	43862032	43	155116											
FAM71A	149647	broad.mit.edu	37	chr1	212799160	212799160	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagcgcagccatagctgGggcggccaccatcggtgcag	17	12	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212799160	T	T	212799160	3	4	193	1	0	0	0	0	1	0	0	0	5658	1232	43	2	943	2	FAM71A	1	212799160	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	7410571	212799160	36451461	44	155117											
EPRS	2058	broad.mit.edu	37	chr1	220174371	220174371	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagcaagacttaactgtcTtcttcagtctccacagtaag	7	10	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220174371	A	A	220174371	1	1	193	0	1	0	0	0	0	0	0	0	5233	1624	56	5		5	EPRS	1	220174371	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	7375211	220174371	29076250	45	155118											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220345428	220345428	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacagaaaaataaactcttAccctgtcaattttttggact	4	8	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220345428	G	G	220345428	1	3	193	0	1	0	0	0	0	0	0	0	13044	406	14	5		5	RAB3GAP2	1	220345428	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	171057	220345428	28905193	46	155119											
PARP1	142	broad.mit.edu	37	chr1	226580692	226580692	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attggaggttctagtaagtgCattaaggaaagaaaaagaaa	11	2	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226580692	T	T	226580692	1	4	193	0	1	0	0	0	0	0	0	0	11548	725	25	4		4	PARP1	1	226580692	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	6235264	226580692	22669929	47	155120											
CDC42BPA	8476	broad.mit.edu	37	chr1	227218999	227218999	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaatgttataaattcatacCtatgattgcggctgcctggg	9	7	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227218999	G	G	227218999	3	3	193	1	0	0	0	0	1	0	0	0	3102	695	24	4	1529	4	CDC42BPA	1	227218999	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	638307	227218999	22031622	48	155121											
OBSCN	84033	broad.mit.edu	37	chr1	228492264	228492264	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcagccacactcacgatcAggggtaaagatcacatgtgg	10	12	4	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228492264	G	G	228492264	1	3	193	0	1	0	0	0	0	0	0	0	10907	203	7	5		5	OBSCN	1	228492264	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	1273265	228492264	20758357	49	155122											
OBSCN	84033	broad.mit.edu	37	chr1	228548231	228548231	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgggaccccaggtccgtagCcttgagggcacctccttcct	11	17	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228548231	G	G	228548231	1	3	193	0	1	0	0	0	0	0	0	0	10907	738	26	4		4	OBSCN	1	228548231	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	55967	228548231	20702390	50	155123											
KIAA1383	54627	broad.mit.edu	37	chr1	232941151	232941151	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagaccccggggcttcagcTtctcgtttgcggagcccgcg	14	14	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232941151	G	G	232941151	3	3	193	1	0	0	0	0	1	0	0	0	8298	1609	56	5	384	5	KIAA1383	1	232941151	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	4392920	232941151	16309470	51	155124											
HEATR1	55127	broad.mit.edu	37	chr1	236749502	236749502	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgttttcttttgtgttaTctgttcactttttctaaaaa	4	7	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236749502	C	C	236749502	1	2	193	0	1	0	0	0	0	0	0	0	7094	1450	50	5		5	HEATR1	1	236749502	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	3808351	236749502	12501119	52	155125											
MTR	4548	broad.mit.edu	37	chr1	237052487	237052487	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctctcctgtagtgaagcCcacgtttattgggacccagg	10	12	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237052487	T	T	237052487	3	4	193	1	0	0	0	0	1	0	0	0	10052	623	22	4	2968	4	MTR	1	237052487	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	302985	237052487	12198134	53	155126											
RYR2	6262	broad.mit.edu	37	chr1	237890503	237890503	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatataatctgccaaggtcGgaattactttattttttgta	6	5	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237890503	A	A	237890503	1	1	193	0	1	0	0	0	0	0	0	0	13880	1131	39	4		4	RYR2	1	237890503	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	838016	237890503	11360118	54	155127											
OR14A16	284532	broad.mit.edu	37	chr1	247978341	247978341	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtaggcttttgactggcCttctgtggaagggatcttct	13	7	3	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247978341	T	T	247978341	3	4	193	1	0	0	0	0	1	0	0	0	11039	681	24	4	242	4	OR14A16	1	247978341	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	10087838	247978341	1272280	55	155128											
OR2W3	343171	broad.mit.edu	37	chr1	248059153	248059153	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctacaaccttaatggatgtGacaagaccatcagctacatg	7	10	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059153	T	T	248059153	3	4	193	1	0	0	0	0	1	0	0	0	11127	1290	45	3	267	3	OR2W3	1	248059153	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	80812	248059153	1191468	56	155129											
OR2L13	284521	broad.mit.edu	37	chr1	248167034	248167034	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagggcacagtgcttttgaGtgccaccatctttctcgtgt	11	10	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248167034	C	C	248167034	1	2	193	0	1	0	0	0	0	0	0	0	11100	1044	36	4		4	OR2L13	1	248167034	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	107881	248167034	1083587	57	155130											
OR2L13	284521	broad.mit.edu	37	chr1	248185701	248185701	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggatcttggatgatagGctccatcaactcttgtgctc	9	10	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248185701	T	T	248185701	1	4	193	0	1	0	0	0	0	0	0	0	11100	1218	42	3		3	OR2L13	1	248185701	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	18667	248185701	1064920	58	155131											
OR2T2	401992	broad.mit.edu	37	chr1	248616138	248616139	+	Missense_Mutation	DNP	GT	AG	AG													tccagaactccactaacttcGtcctcacaggcctcatcacc							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	248616139	AG	AG	248616138	3	1	193	1	0	0	0	0	1	0	0	0	11114	1145	40	4	42	4	OR2T2	1	248616138	Missense_Mutation	DNP	GT	TCGA-67-3770-01A-01D-0969-08	430437	248616138	634483	59	155132											
OR2T10	127069	broad.mit.edu	37	chr1	248757058	248757058	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccacccagggtctggttGgccagccgcatgctgtatga	12	13	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248757058	T	T	248757058	2	4	193	1	0	0	0	0	0	0	0	1	11111	1335	47	2		2	OR2T10	1	248757058	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	140920	248757058	493563	60	155133											
OR14I1	401994	broad.mit.edu	37	chr1	248845133	248845133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccgaaacatgttgccaGtgtggacggctgcgtaggaa	14	10	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248845133	T	T	248845133	3	4	193	1	0	0	0	0	1	0	0	0	11041	1029	36	3	466	3	OR14I1	1	248845133	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	88075	248845133	405488	61	155134											
HS1BP3	64342	broad.mit.edu	37	chr2	20824527	20824527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcctccgaggggtcctgtGgagacagcttcctgcccggg	15	14	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20824527	T	T	20824527	3	4	193	1	0	0	0	0	1	0	0	0	7428	1348	47	2	441	2	HS1BP3	2	20824527	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08		20824527	222374846	62	155135											
APOB	338	broad.mit.edu	37	chr2	21227027	21227027	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagaagaagttgcttaccGcctgtctttcacctagtttg	9	10	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21227027	A	A	21227027	1	1	193	0	1	0	0	0	0	0	0	0	787	1102	38	4		4	APOB	2	21227027	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	402500	21227027	221972346	63	155136											
ADCY3	109	broad.mit.edu	37	chr2	25046044	25046044	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgtggaatgggccggcttCatggccagagtgcagggtgg	19	7	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25046044	T	T	25046044	1	4	193	0	1	0	0	0	0	0	0	0	295	841	29	4		4	ADCY3	2	25046044	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	3819017	25046044	218153329	64	155137											
LTBP1	4052	broad.mit.edu	37	chr2	33614513	33614513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcagaaagtctagggtGggacccagccatctttgttt	12	9	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33614513	T	T	33614513	1	4	193	0	1	0	0	0	0	0	0	0	9160	1363	47	2		2	LTBP1	2	33614513	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	8568469	33614513	209584860	65	155138											
SRBD1	55133	broad.mit.edu	37	chr2	45806916	45806916	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgctgtaatattcttttgTataatcagtacttaacaaaa	4	6	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45806916	C	C	45806916	1	2	193	0	1	0	0	0	0	0	0	0	15251	1653	57	5		5	SRBD1	2	45806916	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	12192403	45806916	197392457	66	155139											
ARHGAP25	9938	broad.mit.edu	37	chr2	69034512	69034512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagttcatcctggagcacGgccggaatgaagagggcatc	14	10	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69034512	T	T	69034512	3	4	193	1	0	0	0	0	1	0	0	0	876	1116	39	1	632	1	ARHGAP25	2	69034512	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	23227596	69034512	174164861	67	155140											
C2orf65	130951	broad.mit.edu	37	chr2	74834436	74834436	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctacccggaggataaatAcagcataagtctgtggtggt	11	8	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74834436	G	G	74834436	1	3	193	0	1	0	0	0	0	0	0	0	2206	406	14	5		5	C2orf65	2	74834436	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	5799924	74834436	168364937	68	155141											
RMND5A	64795	broad.mit.edu	37	chr2	86997154	86997154	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgctctcccagtttctcagCaggttgtgtggcgctgccag	12	13	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86997154	G	G	86997154	3	3	193	1	0	0	0	0	1	0	0	0	13508	710	25	4	889	4	RMND5A	2	86997154	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	12162718	86997154	156202219	69	155142											
SLC5A7	60482	broad.mit.edu	37	chr2	108604526	108604526	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctacatgtgcatagtgcttGactggtttataatgcatccc	8	10	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108604526	C	C	108604526	1	2	193	0	1	0	0	0	0	0	0	0	14784	1305	45	4		4	SLC5A7	2	108604526	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	21607372	108604526	134594847	70	155143											
SULT1C4	27233	broad.mit.edu	37	chr2	108994680	108994680	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagacaggcctgtgctagaGggctggatagtgtggtagtg	17	7	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108994680	A	A	108994680	1	1	193	0	1	0	0	0	0	0	0	0	15497	1015	35	4		4	SULT1C4	2	108994680	5'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08	390154	108994680	134204693	71	155144											
MARCO	8685	broad.mit.edu	37	chr2	119727780	119727780	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcccgtccttctccttgcTgcagtcagcacaccctggag	9	17	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119727780	A	A	119727780	3	1	193	1	0	0	0	0	1	0	0	0	9403	1580	55	5	300	5	MARCO	2	119727780	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	10733100	119727780	123471593	72	155145											
GLI2	2736	broad.mit.edu	37	chr2	121747600	121747600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggctttggcctagtgcaGccccggcctcccctcgagcc	12	18	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121747600	T	T	121747600	3	4	193	1	0	0	0	0	1	0	0	0	6502	962	34	3	4160	3	GLI2	2	121747600	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	2019820	121747600	121451773	73	155146											
NMI	9111	broad.mit.edu	37	chr2	152138400	152138400	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattttgtgtaattaaaaTgctttttccaaaaaccatgc	5	6	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152138400	C	C	152138400	1	2	193	0	1	0	0	0	0	0	0	0	10592	1479	51	5		5	NMI	2	152138400	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	30390800	152138400	91060973	74	155147											
NEB	4703	broad.mit.edu	37	chr2	152467394	152467394	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaatgctacagggcagggCggcatggggcatggggagag	19	6	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152467394	A	A	152467394	1	1	193	0	1	0	0	0	0	0	0	0	10397	783	27	3		3	NEB	2	152467394	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	328994	152467394	90731979	75	155148											
XIRP2	129446	broad.mit.edu	37	chr2	168096520	168096520	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaacagtttccaggactGtatggaaattatgactttgt	8	6	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168096520	T	T	168096520	1	4	193	0	1	0	0	0	0	0	0	0	17557	1392	48	3		3	XIRP2	2	168096520	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	15629126	168096520	75102853	76	155149											
MYO3B	140469	broad.mit.edu	37	chr2	171257993	171257993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttactctttgtttcagctGcctctgttctgtgcattagc	7	12	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171257993	T	T	171257993	3	4	193	1	0	0	0	0	1	0	0	0	10171	1319	46	3	1991	3	MYO3B	2	171257993	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	3161473	171257993	71941380	77	155150											
DNAH7	56171	broad.mit.edu	37	chr2	196636546	196636546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttgtttggaagtttgccCaagatgtcactagcgacctc	10	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196636546	A	A	196636546	3	1	193	1	0	0	0	0	1	0	0	0	4646	593	21	2	823	2	DNAH7	2	196636546	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	25378553	196636546	46562827	78	155151											
ALS2	57679	broad.mit.edu	37	chr2	202593271	202593271	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcattaaagagaatgaaCcaattcacggaaaacctccc	6	11	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202593271	A	A	202593271	3	1	193	1	0	0	0	0	1	0	0	0	550	508	18	3	2248	3	ALS2	2	202593271	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	5956725	202593271	40606102	79	155152											
ALS2	57679	broad.mit.edu	37	chr2	202609145	202609145	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgtcactctgcttataTatccaagctgaaacagaaga	7	10	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202609145	C	C	202609145	3	2	193	1	0	0	0	0	1	0	0	0	550	1406	49	5	3067	5	ALS2	2	202609145	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	15874	202609145	40590228	80	155153											
CPS1	1373	broad.mit.edu	37	chr2	211473091	211473091	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctttttatagctacccAttggcattcattgctgcaaa	5	10	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211473091	G	G	211473091	2	3	193	1	0	0	0	0	0	0	0	1	3855	204	8	5		5	CPS1	2	211473091	Silent	SNP	A	TCGA-67-3770-01A-01D-0969-08	8863946	211473091	31726282	81	155154											
IHH	3549	broad.mit.edu	37	chr2	219920175	219920175	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccatgctttgtgagcggGgcgtaggccccgagggccac	16	13	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219920175	A	A	219920175	2	1	193	1	0	0	0	0	0	0	0	1	7677	1219	43	4		4	IHH	2	219920175	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	8447084	219920175	23279198	82	155155											
ALPP	250	broad.mit.edu	37	chr2	233244768	233244768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaggtggggttgtgggCgtagaaggtgcagcccaggc	20	7	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233244768	A	A	233244768	1	1	193	0	1	0	0	0	0	0	0	0	548	783	27	3		3	ALPP	2	233244768	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	13324593	233244768	9954605	83	155156											
CHL1	10752	broad.mit.edu	37	chr3	419496	419496	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catgtactcactttttttctGataggataattattgatgga	7	5	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	419496	T	T	419496	1	4	193	0	1	0	0	0	0	0	0	0	3380	1305	45	3		3	CHL1	3	419496	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08		419496	197602934	84	155157											
CNTN6	27255	broad.mit.edu	37	chr3	1427297	1427297	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggtttttaattatcaggtCttatactggacagatgactc	8	6	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1427297	A	A	1427297	2	1	193	1	0	0	0	0	0	0	0	1	3677	900	32	3		3	CNTN6	3	1427297	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	1007801	1427297	196595133	85	155158											
MTMR14	64419	broad.mit.edu	37	chr3	9739689	9739689	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcccctctctcagctgctgGacccgaggtatgaaggaggc	12	14	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9739689	T	T	9739689	1	4	193	0	1	0	0	0	0	0	0	0	10036	1189	41	3		3	MTMR14	3	9739689	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	8312392	9739689	188282741	86	155159											
ATP2B2	491	broad.mit.edu	37	chr3	10382279	10382279	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttgcgggcgttgatctcGttgaagagctgcatcatgac	12	9	3	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10382279	A	A	10382279	2	1	193	1	0	0	0	0	0	0	0	1	1144	1136	40	4		4	ATP2B2	3	10382279	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	642590	10382279	187640151	87	155160											
ANKRD28	23243	broad.mit.edu	37	chr3	15836820	15836820	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaccagtgatggctaaaaTagaagagagtaataaaaaca	9	5	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15836820	C	C	15836820	1	2	193	0	1	0	0	0	0	0	0	0	656	1421	49	5		5	ANKRD28	3	15836820	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	5454541	15836820	182185610	88	155161											
KAT2B	8850	broad.mit.edu	37	chr3	20167606	20167606	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacggctcgtctttgacccGtaagtggtactttctgttcc	9	12	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20167606	T	T	20167606	5	4	193	1	0	0	0	0	0	0	1	0	8052	1159	40	3	1661	3	KAT2B	3	20167606	Splice_Site	SNP	G	TCGA-67-3770-01A-01D-0969-08	4330786	20167606	177854824	89	155162											
ZNF385D	79750	broad.mit.edu	37	chr3	21465633	21465633	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaatattgctttaacctgGagaaagatattcattatttc	5	6	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21465633	T	T	21465633	1	4	193	0	1	0	0	0	0	0	0	0	18004	1189	41	3		3	ZNF385D	3	21465633	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1298027	21465633	176556797	90	155163											
ZNF385D	79750	broad.mit.edu	37	chr3	21552223	21552223	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagaggaaacaattaccaTtatacagaaagatggctcaa	8	6	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21552223	C	C	21552223	1	2	193	0	1	0	0	0	0	0	0	0	18004	1508	52	5		5	ZNF385D	3	21552223	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	86590	21552223	176470207	91	155164											
ITGA9	3680	broad.mit.edu	37	chr3	37514988	37514988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgtgggaagggggtgGcactctgagaatgaatgatc	18	5	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37514988	T	T	37514988	1	4	193	0	1	0	0	0	0	0	0	0	7953	1218	42	3		3	ITGA9	3	37514988	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	15962765	37514988	160507442	92	155165											
ZNF502	91392	broad.mit.edu	37	chr3	44751848	44751848	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatcctgcaacgtctttctCagagagcgacttcctacagt	8	12	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44751848	G	G	44751848	1	3	193	0	1	0	0	0	0	0	0	0	18077	841	29	4		4	ZNF502	3	44751848	5'Flank	SNP	C	TCGA-67-3770-01A-01D-0969-08	7236860	44751848	153270582	93	155166											
EXOSC7	23016	broad.mit.edu	37	chr3	45038682	45038682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaacaataaaagcagtgtcGacttaaagaccctctgcatt	6	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45038682	T	T	45038682	3	4	193	1	0	0	0	0	1	0	0	0	5362	1058	37	3	372	3	EXOSC7	3	45038682	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	286834	45038682	152983748	94	155167											
IP6K2	51447	broad.mit.edu	37	chr3	48726111	48726111	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtaccgcccattgtggaaGaactggaaaagtgcctcctt	11	10	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48726111	A	A	48726111	2	1	193	1	0	0	0	0	0	0	0	1	7859	933	33	4		4	IP6K2	3	48726111	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	3687429	48726111	149296319	95	155168											
PBRM1	55193	broad.mit.edu	37	chr3	52584605	52584605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccagctggatgtgggcCgggatatggaggtggtgcct	20	7	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52584605	A	A	52584605	3	1	193	1	0	0	0	0	1	0	0	0	11585	652	23	1	348	1	PBRM1	3	52584605	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	3858494	52584605	145437825	96	155169											
NEK4	6787	broad.mit.edu	37	chr3	52794870	52794870	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggtggattacttcatgatTtgattctgcctctccagaaa	10	8	3	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52794870	A	A	52794870	3	1	193	1	0	0	0	0	1	0	0	0	10421	1841	64	5	1665	5	NEK4	3	52794870	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	210265	52794870	145227560	97	155170											
IL17RD	54756	broad.mit.edu	37	chr3	57168353	57168353	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccattcccgggcttgatgcCgggaaaacaccttggcccgc	11	15	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57168353	T	T	57168353	1	4	193	0	1	0	0	0	0	0	0	0	7712	667	23	4		4	IL17RD	3	57168353	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	4373483	57168353	140854077	98	155171											
PRICKLE2	166336	broad.mit.edu	37	chr3	64133210	64133210	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcggaatcagaggagtcaGaaccattggggtcttcccca	13	10	3	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64133210	T	T	64133210	3	4	193	1	0	0	0	0	1	0	0	0	12593	942	33	3	1586	3	PRICKLE2	3	64133210	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	6964857	64133210	133889220	99	155172											
MAGI1	9223	broad.mit.edu	37	chr3	65673843	65673843	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccatgggtatcactgaccCccgtgagagcggcaacttca	11	13	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65673843	T	T	65673843	1	4	193	0	1	0	0	0	0	0	0	0	9282	638	22	4		4	MAGI1	3	65673843	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1540633	65673843	132348587	100	155173											
UBA3	9039	broad.mit.edu	37	chr3	69111369	69111369	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttttcagtgaattttaaacGaattattttaaaatgcaact	4	5	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69111369	A	A	69111369	1	1	193	0	1	0	0	0	0	0	0	0	16955	1073	37	4		4	UBA3	3	69111369	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	3437526	69111369	128911061	101	155174											
PDZRN3	23024	broad.mit.edu	37	chr3	73437350	73437350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagaacatacaacttccgtGtagctggaaaagaatactga	8	7	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73437350	A	A	73437350	1	1	193	0	1	0	0	0	0	0	0	0	11803	1392	48	4		4	PDZRN3	3	73437350	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	4325981	73437350	124585080	102	155175											
EPHA3	2042	broad.mit.edu	37	chr3	89259778	89259778	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcacttggcaggaaaacaTgcctcaaactgaccatagtc	7	12	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89259778	A	A	89259778	1	1	193	0	1	0	0	0	0	0	0	0	5210	1479	51	5		5	EPHA3	3	89259778	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	15822428	89259778	108762652	103	155176											
OR5H14	403273	broad.mit.edu	37	chr3	97868644	97868644	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagccattatgaccaatGgactgtgcatccggctatta	8	11	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97868644	T	T	97868644	4	4	193	1	0	0	0	0	0	1	0	0	11254	1349	47	2	417	2	OR5H14	3	97868644	Nonsense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	8608866	97868644	100153786	104	155177											
HEG1	57493	broad.mit.edu	37	chr3	124731954	124731954	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggaagggtttgctctgtGgaggactctgttaaggatgg	17	5	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124731954	A	A	124731954	2	1	193	1	0	0	0	0	0	0	0	1	7111	1335	47	4		4	HEG1	3	124731954	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	26863310	124731954	73290476	105	155178											
OSBPL11	114885	broad.mit.edu	37	chr3	125313780	125313780	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggcggctggggcgggactGtcaaatggtccagaaaagga	17	8	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125313780	A	A	125313780	1	1	193	0	1	0	0	0	0	0	0	0	11370	1392	48	4		4	OSBPL11	3	125313780	5'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08	581826	125313780	72708650	106	155179											
C3orf27	23434	broad.mit.edu	37	chr3	128292256	128292256	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgaggaaaggcccacagTggcacagcagagtcctggca	16	10	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128292256	C	C	128292256	3	2	193	1	0	0	0	0	1	0	0	0	2241	1696	59	5	136	5	C3orf27	3	128292256	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	2978476	128292256	69730174	107	155180											
STAG1	10274	broad.mit.edu	37	chr3	136141124	136141124	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacaattgtaataaggttgCtaagttttggaaggggcaga	12	4	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136141124	T	T	136141124	1	4	193	0	1	0	0	0	0	0	0	0	15360	812	28	4		4	STAG1	3	136141124	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	7848868	136141124	61881306	108	155181											
STAG1	10274	broad.mit.edu	37	chr3	136196323	136196324	+	Intron	DNP	CA	AT	AT													atgcattcatactcgctttcCataagcaataaatatttcta							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	136196324	AT	AT	136196323	1	1	193	0	1	0	0	0	0	0	0	0	15360	609	21	2		2	STAG1	3	136196323	Intron	DNP	CA	TCGA-67-3770-01A-01D-0969-08	55199	136196323	61826107	109	155182											
RASA2	5922	broad.mit.edu	37	chr3	141259374	141259374	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatctttttgtcattataGggtaaagttcaccttgaatt	7	5	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141259374	T	T	141259374	5	4	193	1	0	0	0	0	0	0	1	0	13169	1014	35	2	468	2	RASA2	3	141259374	Splice_Site	SNP	G	TCGA-67-3770-01A-01D-0969-08	5063051	141259374	56763056	110	155183											
IGSF10	285313	broad.mit.edu	37	chr3	151164070	151164070	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagatgttttaggaagcatCacagctgtgcttttttgtaa	11	5	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151164070	T	T	151164070	2	4	193	1	0	0	0	0	0	0	0	1	7667	813	29	4		4	IGSF10	3	151164070	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	9904696	151164070	46858360	111	155184											
GOLIM4	27333	broad.mit.edu	37	chr3	167728078	167728078	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatttcagctcttcgatgTgatttctcagcaactgcagc	7	11	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167728078	C	C	167728078	2	2	193	1	0	0	0	0	0	0	0	1	6630	1683	59	5		5	GOLIM4	3	167728078	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	16564008	167728078	30294352	112	155185											
PEX5L	51555	broad.mit.edu	37	chr3	179525380	179525380	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcctaccaaggcaggcatTtttacttggaaacaaccttt	6	11	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179525380	G	G	179525380	1	3	193	0	1	0	0	0	0	0	0	0	11844	1856	64	5		5	PEX5L	3	179525380	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	11797302	179525380	18497050	113	155186											
ZFYVE28	57732	broad.mit.edu	37	chr4	2274775	2274775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggggatcctggggtcgaCgattgcttggtcgggaccct	16	10	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2274775	A	A	2274775	1	1	193	0	1	0	0	0	0	0	0	0	17796	551	19	3		3	ZFYVE28	4	2274775	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08		2274775	188879501	114	155187											
SH3BP2	6452	broad.mit.edu	37	chr4	2834799	2834799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagggctctgagtgggacGgggaccctggccgcatggcc	19	11	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2834799	T	T	2834799	1	4	193	0	1	0	0	0	0	0	0	0	14358	1131	39	1		1	SH3BP2	4	2834799	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	560024	2834799	188319477	115	155188											
STX18	53407	broad.mit.edu	37	chr4	4458978	4458978	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgttctgagtaaagtttaCatactcctgttgcagaagaa	8	7	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4458978	G	G	4458978	3	3	193	1	0	0	0	0	1	0	0	0	15459	478	17	4	598	4	STX18	4	4458978	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	1624179	4458978	186695298	116	155189											
ANAPC4	29945	broad.mit.edu	37	chr4	25384857	25384857	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcaattgttacactaatttAttctgattgttttttcttgt	4	6	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25384857	T	T	25384857	1	4	193	0	1	0	0	0	0	0	0	0	604	464	16	5		5	ANAPC4	4	25384857	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	20925879	25384857	165769419	117	155190											
TLR6	10333	broad.mit.edu	37	chr4	38831004	38831004	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctactgcaaattcatttcCgtcggagaactggattctgg	10	9	3	1	rs138225547		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38831004	A	A	38831004	4	1	193	1	0	0	0	0	0	1	0	0	16078	661	23	1	2303	1	TLR6	4	38831004	Nonsense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	13446147	38831004	152323272	118	155191											
SLC30A9	10463	broad.mit.edu	37	chr4	42003698	42003698	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgtagtcatccatatattGgtaccctgagtcaagtaaag	8	9	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42003698	C	C	42003698	3	2	193	1	0	0	0	0	1	0	0	0	14676	1348	47	4	181	4	SLC30A9	4	42003698	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	3172694	42003698	149150578	119	155192											
TXK	7294	broad.mit.edu	37	chr4	48112481	48112481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttccttctacagaccCaaaacagtatctatacttac	2	11	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48112481	A	A	48112481	1	1	193	0	1	0	0	0	0	0	0	0	16912	609	21	2		2	TXK	4	48112481	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	6108783	48112481	143041795	120	155193											
PDGFRA	5156	broad.mit.edu	37	chr4	55129867	55129867	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtacctctaggaatgaCggattatttagtcatcgtgg	10	7	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55129867	T	T	55129867	3	4	193	1	0	0	0	0	1	0	0	0	11755	536	19	4	411	4	PDGFRA	4	55129867	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	7017386	55129867	136024409	121	155194											
UGT2B15	7366	broad.mit.edu	37	chr4	69520985	69520985	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaagagattaataatcaGttagttaatccatataaaag	6	4	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69520985	T	T	69520985	1	4	193	0	1	0	0	0	0	0	0	0	17084	1044	36	3		3	UGT2B15	4	69520985	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	14391118	69520985	121633291	122	155195											
GC	2638	broad.mit.edu	37	chr4	72623709	72623709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacctgccactcagtacttGgcactcaatacctggcacat	7	14	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72623709	T	T	72623709	1	4	193	0	1	0	0	0	0	0	0	0	6344	1363	47	2		2	GC	4	72623709	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	3102724	72623709	118530567	123	155196											
NKX6-1	4825	broad.mit.edu	37	chr4	85414499	85414499	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggccgccgccgccgccgctGctggacttgtgcttcttcaa	12	16	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85414499	C	C	85414499	3	2	193	1	0	0	0	0	1	0	0	0	10552	1310	46	4	60	4	NKX6-1	4	85414499	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	12790790	85414499	105739777	124	155197											
SEC24D	9871	broad.mit.edu	37	chr4	119659495	119659495	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgattaactagaatttccCggatgaccttcaaaggctgg	9	9	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119659495	A	A	119659495	3	1	193	1	0	0	0	0	1	0	0	0	14110	652	23	1	701	1	SEC24D	4	119659495	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	34244996	119659495	71494781	125	155198											
KIAA1109	84162	broad.mit.edu	37	chr4	123229169	123229169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaacgaatggctttaCataaggatattcatatggct	8	6	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123229169	A	A	123229169	3	1	193	1	0	0	0	0	1	0	0	0	8278	478	17	3	10129	3	KIAA1109	4	123229169	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	3569674	123229169	67925107	126	155199											
SLC7A11	23657	broad.mit.edu	37	chr4	139100436	139100436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagataatacgcagggactCcagtcagagtgatgacgaag	13	7	1	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139100436	A	A	139100436	3	1	193	1	0	0	0	0	1	0	0	0	14808	855	30	3	134	3	SLC7A11	4	139100436	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	15871267	139100436	52053840	127	155200											
NAA15	80155	broad.mit.edu	37	chr4	140265265	140265265	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctttgacttcttacatgtTtttgagtattgtgaacaatt	6	6	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140265265	G	G	140265265	1	3	193	0	1	0	0	0	0	0	0	0	10212	1856	64	5		5	NAA15	4	140265265	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	1164829	140265265	50889011	128	155201											
GLRA3	8001	broad.mit.edu	37	chr4	175649854	175649854	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattcactctgtaatcctatGataaaataatgaaagaaaga	5	5	2	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175649854	C	C	175649854	1	2	193	0	1	0	0	0	0	0	0	0	6520	1305	45	4		4	GLRA3	4	175649854	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	35384589	175649854	15504422	129	155202											
AHRR	57491	broad.mit.edu	37	chr5	353963	353963	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcctgacatcatctccaagCtggacaagctttctgtcctg	8	14	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	353963	G	G	353963	3	3	193	1	0	0	0	0	1	0	0	0	417	796	28	4	203	4	AHRR	5	353963	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08		353963	180561297	130	155203											
SLC12A7	10723	broad.mit.edu	37	chr5	1053370	1053370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaggagaggcgggaagcCagcctcactcccagcaccca	12	15	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1053370	A	A	1053370	1	1	193	0	1	0	0	0	0	0	0	0	14501	609	21	2		2	SLC12A7	5	1053370	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	699407	1053370	179861890	131	155204											
SLC12A7	10723	broad.mit.edu	37	chr5	1075438	1075438	+	Intron	DEL	C	-	-													caggcatagcatgagaggggCccgccctcccgtgcgccggg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1075438	-	-	1075438	6	5	193	0	1	1	0	1	0	0	0	0	14501	754	26	0		0	SLC12A7	5	1075438	Intron	DEL	C	TCGA-67-3770-01A-01D-0969-08	22068	1075438	179839822	132	155205											
IRX4	50805	broad.mit.edu	37	chr5	1879706	1879706	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgcgtagggccgcttctcGtctgcgcacttgttccgcgg	13	15	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1879706	T	T	1879706	3	4	193	1	0	0	0	0	1	0	0	0	7916	1136	40	3	919	3	IRX4	5	1879706	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	804268	1879706	179035554	133	155206											
ADAMTS16	170690	broad.mit.edu	37	chr5	5146226	5146226	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaatgactcagcctctgctCactcttttgatttcagaata	6	10	5	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5146226	A	A	5146226	1	1	193	0	1	0	0	0	0	0	0	0	261	841	29	3		3	ADAMTS16	5	5146226	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	3266520	5146226	175769034	134	155207											
MYO10	4651	broad.mit.edu	37	chr5	16681288	16681289	+	Intron	INS	-	AT	AT													accccagacaggcttagaagINSataaaccaagaggacaactt					rs139510797	by1000genomes	TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	16681289	AT	AT	16681288	6	5	193	0	1	1	1	0	0	0	0	0	10156	957	33	0		0	MYO10	5	16681288	Intron	INS	-	TCGA-67-3770-01A-01D-0969-08	11535062	16681288	164233972	135	155208											
CDH18	1016	broad.mit.edu	37	chr5	19747498	19747499	+	Intron	INS	-	T	T													tatcatttgcttttctgcagINStttttttttttcacttggtt							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19747499	T	T	19747498	6	5	193	0	1	1	1	0	0	0	0	0	3133	1044	36	0		0	CDH18	5	19747498	Intron	INS	-	TCGA-67-3770-01A-01D-0969-08	3066210	19747498	161167762	136	155209											
CDH12	1010	broad.mit.edu	37	chr5	21842294	21842294	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggaatcgaggtggattgtCattgacatcggtgagagtga	17	4	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21842294	A	A	21842294	3	1	193	1	0	0	0	0	1	0	0	0	3128	826	29	3	1626	3	CDH12	5	21842294	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	2094796	21842294	159072966	137	155210											
PDZD2	23037	broad.mit.edu	37	chr5	32048735	32048735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccggatgttggaggtctcccGagatggccggaaacactccc	13	13	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32048735	T	T	32048735	3	4	193	1	0	0	0	0	1	0	0	0	11795	1058	37	3	1636	3	PDZD2	5	32048735	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	10206441	32048735	148866525	138	155211											
ADAMTS12	81792	broad.mit.edu	37	chr5	33614566	33614566	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaacaccacaaaatgtcagtCatctaaaattagtaatggga	6	7	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33614566	A	A	33614566	1	1	193	0	1	0	0	0	0	0	0	0	257	841	29	3		3	ADAMTS12	5	33614566	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1565831	33614566	147300694	139	155212											
IL7R	3575	broad.mit.edu	37	chr5	35856920	35856920	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtttctggaacttgccttCttttttgctgtgtttatact	7	8	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35856920	A	A	35856920	1	1	193	0	1	0	0	0	0	0	0	0	7775	928	32	3		3	IL7R	5	35856920	5'Flank	SNP	C	TCGA-67-3770-01A-01D-0969-08	2242354	35856920	145058340	140	155213											
C5orf33	133686	broad.mit.edu	37	chr5	36200221	36200221	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggatattgtattaaaagcaTgtttgagtaaaaaaaagtac	9	2	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36200221	A	A	36200221	1	1	193	0	1	0	0	0	0	0	0	0	2315	1479	51	5		5	C5orf33	5	36200221	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	343301	36200221	144715039	141	155214											
WDR70	55100	broad.mit.edu	37	chr5	37701031	37701031	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttcctttctttcttctctCtttctccccttccccttccc	0	20	6	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37701031	T	T	37701031	1	4	193	0	1	0	0	0	0	0	0	0	17448	928	32	4		4	WDR70	5	37701031	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1500810	37701031	143214229	142	155215											
PRKAA1	5562	broad.mit.edu	37	chr5	40798230	40798230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagtggccgatcttcaccCgcccgtcgtgtttctgcttc	10	14	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40798230	A	A	40798230	3	1	193	1	0	0	0	0	1	0	0	0	12599	652	23	1	1702	1	PRKAA1	5	40798230	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	3097199	40798230	140117030	143	155216											
C7	730	broad.mit.edu	37	chr5	40934407	40934407	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaataaacaaacaaaccActgcctgctttgtgtttaga	5	9	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40934407	T	T	40934407	1	4	193	0	1	0	0	0	0	0	0	0	2400	174	6	5		5	C7	5	40934407	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	136177	40934407	139980853	144	155217											
C6	729	broad.mit.edu	37	chr5	41158735	41158735	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagctatacttttcgaggtTtttaaaactacaaaccaaaa	4	8	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41158735	A	A	41158735	1	1	193	0	1	0	0	0	0	0	0	0	2338	1856	64	5		5	C6	5	41158735	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	224328	41158735	139756525	145	155218											
ERCC8	1161	broad.mit.edu	37	chr5	60188174	60188174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatagctcatcagattctcCagtggccaagcattccatgg	8	12	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60188174	A	A	60188174	1	1	193	0	1	0	0	0	0	0	0	0	5261	609	21	2		2	ERCC8	5	60188174	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	19029439	60188174	120727086	146	155219											
NLN	57486	broad.mit.edu	37	chr5	65077169	65077169	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccttaaaatatccacactAtttccctgtcatgaagaaat	3	10	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65077169	G	G	65077169	3	3	193	1	0	0	0	0	1	0	0	0	10562	449	16	5	765	5	NLN	5	65077169	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	4888995	65077169	115838091	147	155220											
DMGDH	29958	broad.mit.edu	37	chr5	78325854	78325854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacttatatttgtaaaacCcacctacataaaaaaattaa	3	7	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78325854	A	A	78325854	3	1	193	1	0	0	0	0	1	0	0	0	4621	623	22	2	937	2	DMGDH	5	78325854	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	13248685	78325854	102589406	148	155221											
EDIL3	10085	broad.mit.edu	37	chr5	83433308	83433308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggcatgtgtgtgtttaGtcagtaatacaaatgctgct	11	5	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83433308	T	T	83433308	1	4	193	0	1	0	0	0	0	0	0	0	4955	1044	36	3		3	EDIL3	5	83433308	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	5107454	83433308	97481952	149	155222											
GPR98	84059	broad.mit.edu	37	chr5	89920950	89920950	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgtgtttctttgcaggtaGagggtggcccaaatccccct	11	10	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89920950	T	T	89920950	4	4	193	1	0	0	0	0	0	1	0	0	6787	943	33	3	584	3	GPR98	5	89920950	Nonsense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	6487642	89920950	90994310	150	155223											
RIOK2	55781	broad.mit.edu	37	chr5	96506952	96506952	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaaccatctgtggaaaaTcaatcatggtgatatggtca	9	6	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96506952	A	A	96506952	3	1	193	1	0	0	0	0	1	0	0	0	13489	1435	50	5	969	5	RIOK2	5	96506952	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	6586002	96506952	84408308	151	155224											
PPIP5K2	23262	broad.mit.edu	37	chr5	102508881	102508881	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatggtataactaaagctgAaaaactggagattgccaaag	9	5	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102508881	G	G	102508881	3	3	193	1	0	0	0	0	1	0	0	0	12434	246	9	5	2383	5	PPIP5K2	5	102508881	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	6001929	102508881	78406379	152	155225											
EPB41L4A	64097	broad.mit.edu	37	chr5	111643269	111643269	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggttctcatcttttatTagtttcactcacaatagcag	5	9	5	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111643269	A	A	111643269	1	1	193	0	1	0	0	0	0	0	0	0	5197	1769	61	5		5	EPB41L4A	5	111643269	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	9134388	111643269	69271991	153	155226											
TIFAB	497189	broad.mit.edu	37	chr5	134785501	134785501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcagctggaggtgggcGtcctgcccccgtccgagaag	16	13	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134785501	T	T	134785501	3	4	193	1	0	0	0	0	1	0	0	0	16018	1136	40	3	360	3	TIFAB	5	134785501	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	23142232	134785501	46129759	154	155227											
KDM3B	51780	broad.mit.edu	37	chr5	137722285	137722285	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccagaaaaacagaaagGcagccggtcgcaggcctcgg	14	11	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137722285	A	A	137722285	3	1	193	1	0	0	0	0	1	0	0	0	8197	1203	42	4	1381	4	KDM3B	5	137722285	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	2936784	137722285	43192975	155	155228											
PCDHGA2	56113	broad.mit.edu	37	chr5	140719811	140719811	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaacatcactctaaccgctAaagatggagggaacccctcc	7	14	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140719811	G	G	140719811	3	3	193	1	0	0	0	0	1	0	0	0	11648	363	13	5	1275	5	PCDHGA2	5	140719811	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	2997526	140719811	40195449	156	155229											
STK32A	202374	broad.mit.edu	37	chr5	146730870	146730870	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggtcttctccactagcAagcacccaagatgactttga	8	12	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146730870	C	C	146730870	1	2	193	0	1	0	0	0	0	0	0	0	15415	145	5	5		5	STK32A	5	146730870	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	6011059	146730870	34184390	157	155230											
CSF1R	1436	broad.mit.edu	37	chr5	149456665	149456665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagagatcccaggagaGggtaagggaaagctcctgga	18	6	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149456665	T	T	149456665	1	4	193	0	1	0	0	0	0	0	0	0	3966	1015	35	2		2	CSF1R	5	149456665	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	2725795	149456665	31458595	158	155231											
FAM114A2	10827	broad.mit.edu	37	chr5	153382025	153382025	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccttacttctctcataCtacaggatttgtagcagaga	6	11	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153382025	A	A	153382025	1	1	193	0	1	0	0	0	0	0	0	0	5450	580	20	3		3	FAM114A2	5	153382025	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	3925360	153382025	27533235	159	155232											
SGCD	6444	broad.mit.edu	37	chr5	155885571	155885571	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttccctcaaaccgcatatGtcaaaattcagcaccttgat	4	13	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155885571	A	A	155885571	1	1	193	0	1	0	0	0	0	0	0	0	14314	1392	48	4		4	SGCD	5	155885571	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	2503546	155885571	25029689	160	155233											
EBF1	1879	broad.mit.edu	37	chr5	158526271	158526276	+	Intron	DEL	GCTGCC	-	-													cgcccggccccgcggcagcaGctgccgctgccgctgccgcc					rs10537975		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158526276	-	-	158526271	6	5	193	0	1	1	0	1	0	0	0	0	4920	986	34	0		0	EBF1	5	158526271	Intron	DEL	GCTGCC	TCGA-67-3770-01A-01D-0969-08	2640700	158526271	22388989	161	155234											
ODZ2	57451	broad.mit.edu	37	chr5	167489067	167489067	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttttttttttttcagtgCcctggtcgttgaaaaacagc	7	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167489067	A	A	167489067	3	1	193	1	0	0	0	0	1	0	0	0	10930	739	26	3	1338	3	ODZ2	5	167489067	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	8962796	167489067	13426193	162	155235											
SLIT3	6586	broad.mit.edu	37	chr5	168098448	168098448	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctagaggccggtccgtGccctggcgcaaggcagagag	16	14	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168098448	T	T	168098448	2	4	193	1	0	0	0	0	0	0	0	1	14855	1306	46	3		3	SLIT3	5	168098448	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	609381	168098448	12816812	163	155236											
C5orf25	375484	broad.mit.edu	37	chr5	175763780	175763780	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgctgcaaagtgttagaaatCatattcctccacagctgtga	8	10	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175763780	A	A	175763780	2	1	193	1	0	0	0	0	0	0	0	1	2311	816	29	3		3	C5orf25	5	175763780	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	7665332	175763780	5151480	164	155237											
DUSP22	56940	broad.mit.edu	37	chr6	345693	345693	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attatacaatgtatacatgcAttgaagtgtcacactgtagc	7	7	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	345693	T	T	345693	1	4	193	0	1	0	0	0	0	0	0	0	4861	232	8	5		5	DUSP22	6	345693	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08		345693	170769374	165	155238											
PECI	10455	broad.mit.edu	37	chr6	4116324	4116324	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctggacgtggactcatgCctgtaatcccagcacttggg	13	11	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4116324	T	T	4116324	1	4	193	0	1	0	0	0	0	0	0	0	11810	754	26	4		4	PECI	6	4116324	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	3770631	4116324	166998743	166	155239											
OR5V1	81696	broad.mit.edu	37	chr6	29323725	29323725	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttgagaggaggtgcAccatcatctgggggacattg	13	7	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29323725	G	G	29323725	3	3	193	1	0	0	0	0	1	0	0	0	11278	159	6	5	720	5	OR5V1	6	29323725	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	25207401	29323725	141791342	167	155240											
RPS10	6204	broad.mit.edu	37	chr6	34385331	34385331	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaaatccgcctctctgtaaGagaaagcacatcacatcagc	6	14	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34385331	C	C	34385331	1	2	193	0	1	0	0	0	0	0	0	0	13731	957	33	4		4	RPS10	6	34385331	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	5061606	34385331	136729736	168	155241											
XPO5	57510	broad.mit.edu	37	chr6	43523798	43523798	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accaccctaggggaaaagcaTtcaaaggaactgttttgcag	10	9	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43523798	A	A	43523798	1	1	193	0	1	0	0	0	0	0	0	0	17574	1508	52	5		5	XPO5	6	43523798	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	9138467	43523798	127591269	169	155242											
OPN5	221391	broad.mit.edu	37	chr6	47775990	47775990	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccagactccattcccatacAgctctctgtggtgccaaccc	7	17	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47775990	T	T	47775990	3	4	193	1	0	0	0	0	1	0	0	0	10977	188	7	5	875	5	OPN5	6	47775990	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	4252192	47775990	123339077	170	155243											
DEFB110	245913	broad.mit.edu	37	chr6	49989652	49989652	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagttgaatcttcatggtAgagagtttcttaaaaaaagg	9	3	3	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49989652	G	G	49989652	1	3	193	0	1	0	0	0	0	0	0	0	4439	435	15	5		5	DEFB110	6	49989652	5'UTR	SNP	A	TCGA-67-3770-01A-01D-0969-08	2213662	49989652	121125415	171	155244											
TFAP2B	7021	broad.mit.edu	37	chr6	50811154	50811154	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaatacaaaaggaaaaAcagacaaaaatttaatttta	3	3	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50811154	C	C	50811154	1	2	193	0	1	0	0	0	0	0	0	0	15911	58	2	5		5	TFAP2B	6	50811154	3'UTR	SNP	A	TCGA-67-3770-01A-01D-0969-08	821502	50811154	120303913	172	155245											
EFHC1	114327	broad.mit.edu	37	chr6	52355189	52355189	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagttcattgcagaggctaGgcactgatcattcttttcta	9	8	4	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52355189	A	A	52355189	1	1	193	0	1	0	0	0	0	0	0	0	4986	1015	35	4		4	EFHC1	6	52355189	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1544035	52355189	118759878	173	155246											
EFHC1	114327	broad.mit.edu	37	chr6	52380598	52380598	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatgactctctccagctaTaaaatggcatctctctgtaa	6	10	3	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52380598	C	C	52380598	1	2	193	0	1	0	0	0	0	0	0	0	4986	1421	49	5		5	EFHC1	6	52380598	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	25409	52380598	118734469	174	155247											
COL21A1	81578	broad.mit.edu	37	chr6	56029202	56029202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgttttaacaaaaacagCaagttaggtgttacccactt	8	7	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56029202	A	A	56029202	1	1	193	0	1	0	0	0	0	0	0	0	3712	725	25	3		3	COL21A1	6	56029202	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	3648604	56029202	115085865	175	155248											
FAM135A	57579	broad.mit.edu	37	chr6	71190773	71190773	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcttctccttattttaaaAgaagtgtttttaacaatttt	3	5	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71190773	G	G	71190773	1	3	193	0	1	0	0	0	0	0	0	0	5494	87	3	5		5	FAM135A	6	71190773	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	15161571	71190773	99924294	176	155249											
UBE2CBP	90025	broad.mit.edu	37	chr6	83763711	83763711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcactctgcgattgctagCaagttttgtggctaattttg	9	7	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83763711	A	A	83763711	1	1	193	0	1	0	0	0	0	0	0	0	16973	725	25	3		3	UBE2CBP	6	83763711	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	12572938	83763711	87351356	177	155250											
GJA10	84694	broad.mit.edu	37	chr6	90605805	90605805	+	Frame_Shift_Del	DEL	A	-	-													ttcattcgatacattcagttAaattcaattcataaaataga							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90605805	-	-	90605805	7	5	193	1	0	1	0	1	0	0	0	0	6465	363	13	0	1620	0	GJA10	6	90605805	Frame_Shift_Del	DEL	A	TCGA-67-3770-01A-01D-0969-08	6842094	90605805	80509262	178	155251											
MAP3K7	6885	broad.mit.edu	37	chr6	91269678	91269678	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacactgagtaagccaaaTagagaaaagagaaactcctg	8	7	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91269678	C	C	91269678	1	2	193	0	1	0	0	0	0	0	0	0	9347	1421	49	5		5	MAP3K7	6	91269678	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	663873	91269678	79845389	179	155252											
PRDM1	639	broad.mit.edu	37	chr6	106553068	106553069	+	Frame_Shift_Ins	INS	-	A	A													tgcaagaagcagccccgaccINSaaagcctcaagagctccagc							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106553069	A	A	106553068	7	5	193	1	0	1	1	0	0	0	0	0	12556	595	21	0	1064	0	PRDM1	6	106553068	Frame_Shift_Ins	INS	-	TCGA-67-3770-01A-01D-0969-08	15283390	106553068	64561999	180	155253											
ARMC2	84071	broad.mit.edu	37	chr6	109274604	109274604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacaaccaactttcccgcGgcccaaagacagttctgtgt	8	14	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109274604	T	T	109274604	1	4	193	0	1	0	0	0	0	0	0	0	955	1131	39	1		1	ARMC2	6	109274604	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	2721536	109274604	61840463	181	155254											
C6orf186	728464	broad.mit.edu	37	chr6	110620368	110620368	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctagcctataaagaaagagGacggaaatcaacaacaaaaa	7	8	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110620368	T	T	110620368	1	4	193	0	1	0	0	0	0	0	0	0	2370	1189	41	3		3	C6orf186	6	110620368	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1345764	110620368	60494699	182	155255											
LAMA4	3910	broad.mit.edu	37	chr6	112476952	112476952	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctccttcttaccttcttGgggaatggggccatgtttaa	9	9	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112476952	T	T	112476952	1	4	193	0	1	0	0	0	0	0	0	0	8680	1363	47	2		2	LAMA4	6	112476952	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1856584	112476952	58638115	183	155256											
C6orf58	352999	broad.mit.edu	37	chr6	127911207	127911207	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtgactaattataattAaatacttttccgtttgtctt	6	5	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127911207	C	C	127911207	1	2	193	0	1	0	0	0	0	0	0	0	2391	377	13	5		5	C6orf58	6	127911207	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	15434255	127911207	43203860	184	155257											
SAMD3	154075	broad.mit.edu	37	chr6	130505350	130505350	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacctgttcaccaaaacaagGaggatatgtttcacttcaag	7	9	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130505350	A	A	130505350	1	1	193	0	1	0	0	0	0	0	0	0	13931	1189	41	4		4	SAMD3	6	130505350	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	2594143	130505350	40609717	185	155258											
ENPP1	5167	broad.mit.edu	37	chr6	132147130	132147130	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttcattaggtcaacatttGtctaagcacgtctgtaaata	6	8	5	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132147130	C	C	132147130	1	2	193	0	1	0	0	0	0	0	0	0	5171	1392	48	4		4	ENPP1	6	132147130	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1641780	132147130	38967937	186	155259											
ALDH8A1	64577	broad.mit.edu	37	chr6	135239890	135239890	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttaatgtctgttatcaccGtgggaagcataaagtagcct	9	9	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135239890	A	A	135239890	3	1	193	1	0	0	0	0	1	0	0	0	505	1145	40	4	340	4	ALDH8A1	6	135239890	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	3092760	135239890	35875177	187	155260											
NUP43	348995	broad.mit.edu	37	chr6	150057694	150057694	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattccatcttggccaccagTagctacaacatgctgttggt	8	12	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150057694	C	C	150057694	3	2	193	1	0	0	0	0	1	0	0	0	10860	1638	57	5	451	5	NUP43	6	150057694	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	14817804	150057694	21057373	188	155261											
THBS2	7058	broad.mit.edu	37	chr6	169623382	169623382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagttggctgtctgaaccaGctccttgccttgatggcgaa	12	11	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169623382	T	T	169623382	3	4	193	1	0	0	0	0	1	0	0	0	15977	962	34	3	576	3	THBS2	6	169623382	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	19565688	169623382	1491685	189	155262											
RAC1	5879	broad.mit.edu	37	chr7	6441399	6441399	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggggaggccttgcctgaGgttaggtgtctggcatgagt	18	7	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6441399	A	A	6441399	1	1	193	0	1	0	0	0	0	0	0	0	13082	1015	35	4		4	RAC1	7	6441399	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08		6441399	152697264	190	155263											
TMEM195	392636	broad.mit.edu	37	chr7	15601381	15601381	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcacctcttctaatgtttgGaatgaagtttcactgggttt	10	7	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15601381	C	C	15601381	3	2	193	1	0	0	0	0	1	0	0	0	16240	1165	41	4	1299	4	TMEM195	7	15601381	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	9159982	15601381	143537282	191	155264											
GHRHR	2692	broad.mit.edu	37	chr7	31013682	31013682	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttggcagaagccgtctaccTgaactgcctcctggcctcca	10	15	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31013682	A	A	31013682	3	1	193	1	0	0	0	0	1	0	0	0	6437	1580	55	5	706	5	GHRHR	7	31013682	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	15412301	31013682	128124981	192	155265											
CCDC129	223075	broad.mit.edu	37	chr7	31690852	31690852	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttatgggacagcaggccCtcttttccagggacatgtca	10	12	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31690852	T	T	31690852	3	4	193	1	0	0	0	0	1	0	0	0	2790	681	24	4	2722	4	CCDC129	7	31690852	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	677170	31690852	127447811	193	155266											
PDE1C	5137	broad.mit.edu	37	chr7	31864557	31864558	+	Missense_Mutation	DNP	CC	AA	AA													cacaatcttctcggtcatgtCcgtaagcacagtgaaggtgg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31864558	AA	AA	31864557	3	1	193	1	0	0	0	0	1	0	0	0	11729	855	30	3	594	3	PDE1C	7	31864557	Missense_Mutation	DNP	CC	TCGA-67-3770-01A-01D-0969-08	173705	31864557	127274106	194	155267											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	193	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	23394958	55259515	103879148	195	155268											
ZNF479	90827	broad.mit.edu	37	chr7	57188147	57188147	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacattcctcacacctGcagggtttctctccagtatg	7	14	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57188147	C	C	57188147	3	2	193	1	0	0	0	0	1	0	0	0	18060	1311	46	4	603	4	ZNF479	7	57188147	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1928632	57188147	101950516	196	155269											
ZNF479	90827	broad.mit.edu	37	chr7	57199980	57199980	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccctctctcacgatgacagAcccagcactcaccatttctc	4	19	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57199980	T	T	57199980	1	4	193	0	1	0	0	0	0	0	0	0	18060	290	10	5		5	ZNF479	7	57199980	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	11833	57199980	101938683	197	155270											
ZNF716	441234	broad.mit.edu	37	chr7	57510079	57510079	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggggtgggggctggttGgaactgactgaaagtggctg	21	4	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57510079	T	T	57510079	1	4	193	0	1	0	0	0	0	0	0	0	18247	1363	47	2		2	ZNF716	7	57510079	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	310099	57510079	101628584	198	155271											
HIP1	3092	broad.mit.edu	37	chr7	75185675	75185675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggtggatgacagcaacGccaaagccaggggtggggca	18	8	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75185675	A	A	75185675	1	1	193	0	1	0	0	0	0	0	0	0	7181	1102	38	4		4	HIP1	7	75185675	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	17675596	75185675	83952988	199	155272											
PCLO	27445	broad.mit.edu	37	chr7	82764395	82764395	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatttttgaatctgatgcaGgtcgaggtatggctttagaa	11	4	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82764395	A	A	82764395	3	1	193	1	0	0	0	0	1	0	0	0	11677	1000	35	4	13066	4	PCLO	7	82764395	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	7578720	82764395	76374268	200	155273											
AKAP9	10142	broad.mit.edu	37	chr7	91667886	91667886	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattatcacaggatcaaAttggttttcagacttttgag	8	5	3	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91667886	G	G	91667886	3	3	193	1	0	0	0	0	1	0	0	0	459	101	4	5	4558	5	AKAP9	7	91667886	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	8903491	91667886	67470777	201	155274											
TMEM130	222865	broad.mit.edu	37	chr7	98449098	98449098	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtcttgctgatgatattctCggcccggatgctgaagcagt	12	9	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98449098	T	T	98449098	3	4	193	1	0	0	0	0	1	0	0	0	16166	893	31	4	367	4	TMEM130	7	98449098	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	6781212	98449098	60689565	202	155275											
MUC17	140453	broad.mit.edu	37	chr7	100681561	100681561	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaagtatacctgtcagccaCacgctggtggccaattctga	9	12	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100681561	G	G	100681561	3	3	193	1	0	0	0	0	1	0	0	0	10068	477	17	4	6874	4	MUC17	7	100681561	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	2232463	100681561	58457102	203	155276											
MUC17	140453	broad.mit.edu	37	chr7	100682066	100682066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctagtgaaggaaccactCcgttagcaagtatgcctgtc	9	12	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100682066	A	A	100682066	3	1	193	1	0	0	0	0	1	0	0	0	10068	855	30	3	7379	3	MUC17	7	100682066	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	505	100682066	58456597	204	155277											
EMID2	136227	broad.mit.edu	37	chr7	101200597	101200597	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatcatgatcaaatgtacCcccaagtgttcctaaggctc	6	12	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101200597	A	A	101200597	1	1	193	0	1	0	0	0	0	0	0	0	5134	638	22	2		2	EMID2	7	101200597	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	518531	101200597	57938066	205	155278											
PMPCB	9512	broad.mit.edu	37	chr7	102937953	102937953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcatccgcggcgcggcGgcggctctggggtttcagcg	18	12	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102937953	T	T	102937953	3	4	193	1	0	0	0	0	1	0	0	0	12236	1116	39	1	49	1	PMPCB	7	102937953	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1737356	102937953	56200710	206	155279											
LHFPL3	375612	broad.mit.edu	37	chr7	104309110	104309110	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagacgggatgatcggtcGtggagctccagagatgatta	15	7	0	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104309110	T	T	104309110	1	4	193	0	1	0	0	0	0	0	0	0	8838	1160	40	3		3	LHFPL3	7	104309110	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1371157	104309110	54829553	207	155280											
COG5	10466	broad.mit.edu	37	chr7	106898754	106898754	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcaacttatacaatgaattCactactgccacatttcttct	3	11	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106898754	A	A	106898754	2	1	193	1	0	0	0	0	0	0	0	1	3693	813	29	3		3	COG5	7	106898754	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	2589644	106898754	52239909	208	155281											
NDUFA5	4698	broad.mit.edu	37	chr7	123197914	123197914	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcagacctgctcaatcgaCcaccgaggtcgccactctgt	8	16	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123197914	A	A	123197914	1	1	193	0	1	0	0	0	0	0	0	0	10363	522	18	3		3	NDUFA5	7	123197914	5'UTR	SNP	C	TCGA-67-3770-01A-01D-0969-08	16299160	123197914	35940749	209	155282											
FLNC	2318	broad.mit.edu	37	chr7	128496848	128496848	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaatggcgtccactccatCgatgtcaagttcaacggtgc	11	11	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128496848	A	A	128496848	2	1	193	1	0	0	0	0	0	0	0	1	5993	874	31	3		3	FLNC	7	128496848	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	5298934	128496848	30641815	210	155283											
AKR1B15	441282	broad.mit.edu	37	chr7	134261164	134261164	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagattgctgcaaagcaCaaaaaaaccacagcccaggt	9	10	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134261164	A	A	134261164	3	1	193	1	0	0	0	0	1	0	0	0	468	477	17	3	833	3	AKR1B15	7	134261164	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	5764316	134261164	24877499	211	155284											
STRA8	346673	broad.mit.edu	37	chr7	134929866	134929866	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcattgattgattttcaaaTgttgaaccagttctcttgca	7	7	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134929866	C	C	134929866	1	2	193	0	1	0	0	0	0	0	0	0	15441	1479	51	5		5	STRA8	7	134929866	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	668702	134929866	24208797	212	155285											
UBN2	254048	broad.mit.edu	37	chr7	138977896	138977896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgtaaggcacagtcttGcatctgtgaggatattatag	11	6	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138977896	T	T	138977896	1	4	193	0	1	0	0	0	0	0	0	0	17019	1334	46	3		3	UBN2	7	138977896	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	4048030	138977896	20160767	213	155286											
ADCK2	90956	broad.mit.edu	37	chr7	140380905	140380905	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggacttgaaaaggaagattGcacggctggggatcaacatg	14	6	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140380905	C	C	140380905	3	2	193	1	0	0	0	0	1	0	0	0	289	1319	46	4	1287	4	ADCK2	7	140380905	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1403009	140380905	18757758	214	155287											
KEL	3792	broad.mit.edu	37	chr7	142655387	142655387	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttaatatcccaacttttcTcacctcctcaataacttgtc	2	13	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142655387	A	A	142655387	1	1	193	0	1	0	0	0	0	0	0	0	8212	1566	54	5		5	KEL	7	142655387	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	2274482	142655387	16483276	215	155288											
GALNTL5	168391	broad.mit.edu	37	chr7	151664369	151664369	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaaggtttattctatgggtCcttgacatttgggatctgga	11	6	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151664369	A	A	151664369	3	1	193	1	0	0	0	0	1	0	0	0	6286	855	30	3	40	3	GALNTL5	7	151664369	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	9008982	151664369	7474294	216	155289											
MLL3	58508	broad.mit.edu	37	chr7	151962197	151962197	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtaaccgctatatccagGcacattccatgatagtgctg	10	10	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151962197	T	T	151962197	4	4	193	1	0	0	0	0	0	1	0	0	9715	1195	42	3	13833	3	MLL3	7	151962197	Nonsense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	297828	151962197	7176466	217	155290											
PTPRN2	5799	broad.mit.edu	37	chr7	157931355	157931355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccagtgctcagagaagaTtgggatattggacttgaatc	13	6	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157931355	C	C	157931355	1	2	193	0	1	0	0	0	0	0	0	0	12916	1508	52	5		5	PTPRN2	7	157931355	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	5969158	157931355	1207308	218	155291											
RNF122	79845	broad.mit.edu	37	chr8	33406783	33406783	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccctgtcccaacctaatcCctctgggctttgctcggtgt	8	16	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33406783	T	T	33406783	1	4	193	0	1	0	0	0	0	0	0	0	13543	638	22	4		4	RNF122	8	33406783	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08		33406783	112957239	219	155292											
CHRNB3	1142	broad.mit.edu	37	chr8	42565702	42565702	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggagatttgtgggaaGggtctatggcttttattttc	13	5	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42565702	T	T	42565702	1	4	193	0	1	0	0	0	0	0	0	0	3423	1015	35	2		2	CHRNB3	8	42565702	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	9158919	42565702	103798320	220	155293											
CNGB3	54714	broad.mit.edu	37	chr8	87755667	87755667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcgtagcagtgattaaatGctattaccagataagaaatg	8	5	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87755667	T	T	87755667	1	4	193	0	1	0	0	0	0	0	0	0	3633	1334	46	3		3	CNGB3	8	87755667	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	45189965	87755667	58608355	221	155294											
TMEM67	91147	broad.mit.edu	37	chr8	94776060	94776060	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatctttattttgtttctaAactgttcagtggaaagagac	7	6	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94776060	G	G	94776060	1	3	193	0	1	0	0	0	0	0	0	0	16319	29	1	5		5	TMEM67	8	94776060	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	7020393	94776060	51587962	222	155295											
RIMS2	9699	broad.mit.edu	37	chr8	104709469	104709469	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggccataactgttcatattGccaaacaaagttctgtgctc	7	10	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104709469	C	C	104709469	3	2	193	1	0	0	0	0	1	0	0	0	13479	1319	46	4	338	4	RIMS2	8	104709469	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	9933409	104709469	41654553	223	155296											
CSMD3	114788	broad.mit.edu	37	chr8	113648994	113648994	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagggtgtaaccatgcaacTccatggacagtgactacaca	10	10	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113648994	A	A	113648994	1	1	193	0	1	0	0	0	0	0	0	0	3980	1566	54	5		5	CSMD3	8	113648994	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	8939525	113648994	32715028	224	155297											
CSMD3	114788	broad.mit.edu	37	chr8	113988081	113988081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatacctctatgagtaacaaCtgcaagctctttagttcttt	5	9	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113988081	A	A	113988081	3	1	193	1	0	0	0	0	1	0	0	0	3980	565	20	3	10056	3	CSMD3	8	113988081	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	339087	113988081	32375941	225	155298											
CSMD3	114788	broad.mit.edu	37	chr8	114186033	114186033	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctgagggtggccatcaagGatgtatccagttacacagct	12	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114186033	A	A	114186033	2	1	193	1	0	0	0	0	0	0	0	1	3980	1164	41	4		4	CSMD3	8	114186033	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	197952	114186033	32177989	226	155299											
TAF2	6873	broad.mit.edu	37	chr8	120773109	120773109	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaatccaccttcaatttTgtaatagagtcacaagccat	4	9	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120773109	G	G	120773109	1	3	193	0	1	0	0	0	0	0	0	0	15643	1827	63	5		5	TAF2	8	120773109	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	6587076	120773109	25590913	227	155300											
MTSS1	9788	broad.mit.edu	37	chr8	125577892	125577892	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcaagagtggaccccgGcttcactcacctgcagacac	10	14	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125577892	A	A	125577892	1	1	193	0	1	0	0	0	0	0	0	0	10056	1218	42	4		4	MTSS1	8	125577892	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	4804783	125577892	20786130	228	155301											
SQLE	6713	broad.mit.edu	37	chr8	126011616	126011616	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcagataatctccgccttGaccggtgccaccaaagaagc	10	13	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126011616	T	T	126011616	1	4	193	0	1	0	0	0	0	0	0	0	15246	1305	45	3		3	SQLE	8	126011616	5'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08	433724	126011616	20352406	229	155302											
TPD52L3	89882	broad.mit.edu	37	chr9	6329037	6329037	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtctttcttctgcggaGggtggggttgatctgctctc	14	9	5	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6329037	T	T	6329037	1	4	193	0	1	0	0	0	0	0	0	0	16524	1015	35	2		2	TPD52L3	9	6329037	3'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08		6329037	134884394	230	155303											
ELAVL2	1993	broad.mit.edu	37	chr9	23701585	23701585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcaaatcgaataaaccCtacaccccttgatatgccta	4	13	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23701585	A	A	23701585	3	1	193	1	0	0	0	0	1	0	0	0	5092	681	24	2	586	2	ELAVL2	9	23701585	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	17372548	23701585	117511846	231	155304											
ANKRD20A3	441425	broad.mit.edu	37	chr9	67952114	67952114	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaggccgaggcgggcggAtcacaaggtcaggagatcca	18	9	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67952114	C	C	67952114	1	2	193	0	1	0	0	0	0	0	0	0	649	348	12	5		5	ANKRD20A3	9	67952114	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	44250529	67952114	73261317	232	155305											
PCSK5	5125	broad.mit.edu	37	chr9	78506292	78506292	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcaacataggacaggtAacgaactacaggctagccca	8	11	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78506292	T	T	78506292	1	4	193	0	1	0	0	0	0	0	0	0	11697	377	13	5		5	PCSK5	9	78506292	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	10554178	78506292	62707139	233	155306											
SEMA4D	10507	broad.mit.edu	37	chr9	92065386	92065386	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatgaaatgctgcaaccaTttaatgttctctatgagaag	7	7	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92065386	C	C	92065386	1	2	193	0	1	0	0	0	0	0	0	0	14147	1508	52	5		5	SEMA4D	9	92065386	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	13559094	92065386	49148045	234	155307											
XPA	7507	broad.mit.edu	37	chr9	100461539	100461539	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctggagagtaaaatcCaggagcacctgtagaagaag	14	6	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100461539	T	T	100461539	1	4	193	0	1	0	0	0	0	0	0	0	17567	609	21	4		4	XPA	9	100461539	5'Flank	SNP	C	TCGA-67-3770-01A-01D-0969-08	8396153	100461539	40751892	235	155308											
GABBR2	9568	broad.mit.edu	37	chr9	101235551	101235551	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttggcttccgtgtgcacCtgctcccaccaagaaggctc	11	14	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101235551	A	A	101235551	3	1	193	1	0	0	0	0	1	0	0	0	6216	680	24	2	2005	2	GABBR2	9	101235551	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	774012	101235551	39977880	236	155309											
GRIN3A	116443	broad.mit.edu	37	chr9	104335780	104335780	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatacggtaagctgacgGggtcccacattagacctagg	11	11	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104335780	T	T	104335780	2	4	193	1	0	0	0	0	0	0	0	1	6849	1219	43	2		2	GRIN3A	9	104335780	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	3100229	104335780	36877651	237	155310											
EPB41L4B	54566	broad.mit.edu	37	chr9	112018498	112018498	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagagaatattcacagccatCtcttccctacaaacaaacga	4	12	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112018498	A	A	112018498	3	1	193	1	0	0	0	0	1	0	0	0	5198	913	32	3	2079	3	EPB41L4B	9	112018498	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	7682718	112018498	29194933	238	155311											
MAPKAP1	79109	broad.mit.edu	37	chr9	128358883	128358883	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttccagtagcagcagtagCtacagcagtggcagaagatt	12	8	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128358883	G	G	128358883	1	3	193	0	1	0	0	0	0	0	0	0	9380	812	28	4		4	MAPKAP1	9	128358883	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	16340385	128358883	12854548	239	155312											
SLC2A8	29988	broad.mit.edu	37	chr9	130169336	130169336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctgtctcagtgatcgcGtggggcttcctgatctctcc	12	12	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130169336	T	T	130169336	1	4	193	0	1	0	0	0	0	0	0	0	14665	1160	40	3		3	SLC2A8	9	130169336	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1810453	130169336	11044095	240	155313											
CELF2	10659	broad.mit.edu	37	chr10	11047364	11047364	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaagcatgcgctgtcccaAatccgctgttactatgagaa	9	10	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11047364	G	G	11047364	3	3	193	1	0	0	0	0	1	0	0	0	3246	14	1	5	16	5	CELF2	10	11047364	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08		11047364	124487383	241	155314											
ARL5B	221079	broad.mit.edu	37	chr10	18948604	18948604	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaactgtggagcctcttctGtaaccaaggtgagaagaatg	11	8	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18948604	T	T	18948604	3	4	193	1	0	0	0	0	1	0	0	0	944	1377	48	3	40	3	ARL5B	10	18948604	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	7901240	18948604	116586143	242	155315											
ANXA8	653145	broad.mit.edu	37	chr10	47133423	47133423	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaaagtataggcctccaTtgccacaggggccagagctt	11	11	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47133423	A	A	47133423	1	1	193	0	1	0	0	0	0	0	0	0	724	1508	52	5		5	ANXA8	10	47133423	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	28184819	47133423	88401324	243	155316											
CHAT	1103	broad.mit.edu	37	chr10	50828375	50828375	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagggcacaaaggtgaagGacaggcctggtggactggga	19	6	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50828375	T	T	50828375	1	4	193	0	1	0	0	0	0	0	0	0	3344	1189	41	3		3	CHAT	10	50828375	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	3694952	50828375	84706372	244	155317											
C10orf53	282966	broad.mit.edu	37	chr10	50916417	50916417	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttctcaggcaagctcacCccaagtagtgacaagaggac	10	11	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50916417	A	A	50916417	2	1	193	1	0	0	0	0	0	0	0	1	1617	610	22	2		2	C10orf53	10	50916417	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	88042	50916417	84618330	245	155318											
OGDHL	55753	broad.mit.edu	37	chr10	50946023	50946023	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggcagcaggatctgccgGcgcagcacgtggaagtagtt	16	9	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50946023	A	A	50946023	2	1	193	1	0	0	0	0	0	0	0	1	10935	1190	42	4		4	OGDHL	10	50946023	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	29606	50946023	84588724	246	155319											
MYPN	84665	broad.mit.edu	37	chr10	69882001	69882001	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacctctggggcaacctcCccggttcactcaaaagttac	8	14	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69882001	T	T	69882001	3	4	193	1	0	0	0	0	1	0	0	0	10192	623	22	4	808	4	MYPN	10	69882001	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	18935978	69882001	65652746	247	155320											
CDH23	64072	broad.mit.edu	37	chr10	73270728	73270728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaccaagtcagagttcacCgtggagttctctgtcagcga	11	11	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73270728	A	A	73270728	2	1	193	1	0	0	0	0	0	0	0	1	3138	639	23	1		1	CDH23	10	73270728	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	3388727	73270728	62264019	248	155321											
ASCC1	51008	broad.mit.edu	37	chr10	73950276	73950276	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccaccacactattggtgGttctcgcagggcagcttgga	12	11	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73950276	A	A	73950276	1	1	193	0	1	0	0	0	0	0	0	0	1035	1276	44	4		4	ASCC1	10	73950276	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	679548	73950276	61584471	249	155322											
KIAA0913	23053	broad.mit.edu	37	chr10	75548819	75548819	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgccaaaggttatttgCtgagttgtggctgtgtcctc	13	8	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75548819	T	T	75548819	1	4	193	0	1	0	0	0	0	0	0	0	8270	812	28	4		4	KIAA0913	10	75548819	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1598543	75548819	59985928	250	155323											
IFIT2	3433	broad.mit.edu	37	chr10	91061832	91061832	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagatttctgaagagtgcAgctgcctgaaccgagccctg	13	10	1	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91061832	T	T	91061832	1	4	193	0	1	0	0	0	0	0	0	0	7593	203	7	5		5	IFIT2	10	91061832	5'UTR	SNP	A	TCGA-67-3770-01A-01D-0969-08	15513013	91061832	44472915	251	155324											
TLL2	7093	broad.mit.edu	37	chr10	98146807	98146807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgatgctcgcacccgccGtgatctggccaggaacactc	11	16	1	1	rs144026118		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98146807	T	T	98146807	3	4	193	1	0	0	0	0	1	0	0	0	16069	1136	40	3	1324	3	TLL2	10	98146807	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	7084975	98146807	37387940	252	155325											
NOLC1	9221	broad.mit.edu	37	chr10	103917833	103917833	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagccccaagccaaggcaGccaaagctcctcctaagaag	8	14	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103917833	T	T	103917833	3	4	193	1	0	0	0	0	1	0	0	0	10624	971	34	3	487	3	NOLC1	10	103917833	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	5771026	103917833	31616914	253	155326											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105361828	105361828	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacacgggtatgctgttgcgCtgggcgggcagtaggggtga	20	7	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105361828	G	G	105361828	3	3	193	1	0	0	0	0	1	0	0	0	14369	796	28	4	258	4	SH3PXD2A	10	105361828	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	1443995	105361828	30172919	254	155327											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118357646	118357646	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgcaagaagaatgccctgtCtcagatcgtggatctagatg	11	8	2	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118357646	T	T	118357646	3	4	193	1	0	0	0	0	1	0	0	0	12245	913	32	4	808	4	PNLIPRP1	10	118357646	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	12995818	118357646	17177101	255	155328											
NSMCE4A	54780	broad.mit.edu	37	chr10	123719174	123719174	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcggaacaggtaatctaaaCggaaactgatgaataatagc	9	6	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123719174	T	T	123719174	1	4	193	0	1	0	0	0	0	0	0	0	10772	551	19	4		4	NSMCE4A	10	123719174	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	5361528	123719174	11815573	256	155329											
MKI67	4288	broad.mit.edu	37	chr10	129904904	129904904	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagctctgtaggatacttTggtagttttttcgttagtca	10	5	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129904904	A	A	129904904	4	1	193	1	0	0	0	0	0	1	0	0	9691	1821	63	5	4582	5	MKI67	10	129904904	Nonsense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	6185730	129904904	5629843	257	155330											
DPYSL4	10570	broad.mit.edu	37	chr10	134017473	134017473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgggggtgaggggctctgCcggagcatccagggcctcag	19	10	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134017473	A	A	134017473	1	1	193	0	1	0	0	0	0	0	0	0	4789	754	26	3		3	DPYSL4	10	134017473	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	4112569	134017473	1517274	258	155331											
GPR123	84435	broad.mit.edu	37	chr10	134886239	134886239	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctcagtctgtttctcctgTaacacagtctttaaagttaa	5	9	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134886239	A	A	134886239	1	1	193	0	1	0	0	0	0	0	0	0	6702	1653	57	5		5	GPR123	10	134886239	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	868766	134886239	648508	259	155332											
MUC2	4583	broad.mit.edu	37	chr11	1081893	1081893	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctggaagggcagacggggctCccagcaggaagcatgggtgg	19	9	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1081893	G	G	1081893	1	3	193	0	1	0	0	0	0	0	0	0	10069	870	30	4		4	MUC2	11	1081893	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08		1081893	133924623	260	155333											
TRPM5	29850	broad.mit.edu	37	chr11	2429206	2429206	+	Intron	DEL	T	-	-													caagggcggccttaggcaaaTgccccgagatagagcgctga							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2429206	-	-	2429206	6	5	193	0	1	1	0	1	0	0	0	0	16714	1479	51	0		0	TRPM5	11	2429206	Intron	DEL	T	TCGA-67-3770-01A-01D-0969-08	1347313	2429206	132577310	261	155334											
OR51G1	79324	broad.mit.edu	37	chr11	4944698	4944698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgatgctgtagatgatgGggttcataaggggtggtacc	15	5	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4944698	T	T	4944698	3	4	193	1	0	0	0	0	1	0	0	0	11192	1232	43	2	95	2	OR51G1	11	4944698	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	2515492	4944698	130061818	262	155335											
OR52A1	23538	broad.mit.edu	37	chr11	5173255	5173255	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggccatggccacaaggatGcctgactctataccctgcaa	10	13	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5173255	A	A	5173255	2	1	193	1	0	0	0	0	0	0	0	1	11202	1306	46	4		4	OR52A1	11	5173255	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	228557	5173255	129833261	263	155336											
OR51V1	283111	broad.mit.edu	37	chr11	5221796	5221796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattgcccaaaagcaccatGgcatagattgaggagaaggg	12	8	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5221796	T	T	5221796	2	4	193	1	0	0	0	0	0	0	0	1	11201	1335	47	2		2	OR51V1	11	5221796	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	48541	5221796	129784720	264	155337											
OR56A1	120796	broad.mit.edu	37	chr11	6048560	6048560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacataacggtcataggcCatgaccataaacgtgcagga	10	11	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6048560	A	A	6048560	3	1	193	1	0	0	0	0	1	0	0	0	11227	594	21	2	585	2	OR56A1	11	6048560	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	826764	6048560	128957956	265	155338											
OR10A4	283297	broad.mit.edu	37	chr11	6898596	6898596	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggaaacatcaggcattcTccacctgttccgcccacctc	8	16	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6898596	G	G	6898596	3	3	193	1	0	0	0	0	1	0	0	0	10986	1551	54	5	720	5	OR10A4	11	6898596	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	850036	6898596	128107920	266	155339											
PPFIBP2	8495	broad.mit.edu	37	chr11	7656626	7656626	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggagttggacagggatctTtcctgccctggatggtgatt	14	7	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7656626	C	C	7656626	1	2	193	0	1	0	0	0	0	0	0	0	12410	1856	64	5		5	PPFIBP2	11	7656626	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	758030	7656626	127349890	267	155340											
C11orf16	56673	broad.mit.edu	37	chr11	8947732	8947733	+	Intron	INS	-	TTT	TTT													ttttttctttttttcttttcINStttttttttttttttttttg					rs147920860		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTT	8947733	TTT	TTT	8947732	6	5	193	0	1	1	1	0	0	0	0	0	1642	928	32	0		0	C11orf16	11	8947732	Intron	INS	-	TCGA-67-3770-01A-01D-0969-08	1291106	8947732	126058784	268	155341											
NAV2	89797	broad.mit.edu	37	chr11	19955796	19955796	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaatacaaccatcccaacaCtgccacggttgcacctttcc	5	17	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19955796	A	A	19955796	3	1	193	1	0	0	0	0	1	0	0	0	10278	565	20	3	2111	3	NAV2	11	19955796	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	11008064	19955796	115050720	269	155342											
DBX1	120237	broad.mit.edu	37	chr11	20177828	20177828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatctgagaagtccgaagGtttcccgggactgctcgagt	14	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20177828	T	T	20177828	3	4	193	1	0	0	0	0	1	0	0	0	4292	1261	44	3	71	3	DBX1	11	20177828	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	222032	20177828	114828688	270	155343											
LDLRAD3	143458	broad.mit.edu	37	chr11	36057608	36057608	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagttgaggggcgctgaggtCcctgctgttgctgtgccgtc	16	11	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36057608	G	G	36057608	1	3	193	0	1	0	0	0	0	0	0	0	8779	870	30	4		4	LDLRAD3	11	36057608	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	15879780	36057608	98948908	271	155344											
OR4A5	81318	broad.mit.edu	37	chr11	51412419	51412419	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcttctttaaggcttgtatCagaggtgagagctcagggaa	12	7	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51412419	G	G	51412419	1	3	193	0	1	0	0	0	0	0	0	0	11137	841	29	4		4	OR4A5	11	51412419	5'Flank	SNP	C	TCGA-67-3770-01A-01D-0969-08	15354811	51412419	83594097	272	155345											
OR4C6	219432	broad.mit.edu	37	chr11	55433035	55433035	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtaagcccctgcactacacGatcatcatgagtccacgggt	9	13	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55433035	C	C	55433035	2	2	193	1	0	0	0	0	0	0	0	1	11146	1045	37	4		4	OR4C6	11	55433035	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	4020616	55433035	79573481	273	155346											
OR5D14	219436	broad.mit.edu	37	chr11	55562907	55562907	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttcttggacaaaactaGgaccagtaactattccttct	6	10	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55562907	T	T	55562907	1	4	193	0	1	0	0	0	0	0	0	0	11249	1015	35	2		2	OR5D14	11	55562907	5'Flank	SNP	G	TCGA-67-3770-01A-01D-0969-08	129872	55562907	79443609	274	155347											
OR5T2	219464	broad.mit.edu	37	chr11	56000141	56000141	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagactctgggtgacatgCtcactgaatacaggagaggg	14	7	2	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56000141	A	A	56000141	3	1	193	1	0	0	0	0	1	0	0	0	11276	797	28	3	557	3	OR5T2	11	56000141	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	437234	56000141	79006375	275	155348											
C11orf10	746	broad.mit.edu	37	chr11	61559843	61559843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctcgcccttagaaatcgCgagctgagaaacctaaggag	10	12	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61559843	A	A	61559843	1	1	193	0	1	0	0	0	0	0	0	0	1641	783	27	3		3	C11orf10	11	61559843	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	5559702	61559843	73446673	276	155349											
SLC22A10	387775	broad.mit.edu	37	chr11	63078458	63078458	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcaatttattgtttcTgttttgttttgtttttccag	5	5	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63078458	C	C	63078458	1	2	193	0	1	0	0	0	0	0	0	0	14554	1595	55	5		5	SLC22A10	11	63078458	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	1518615	63078458	71928058	277	155350											
SLC22A9	114571	broad.mit.edu	37	chr11	63149534	63149534	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccaccagacagaaagtgcAgtcaactcacttctcatctg	6	13	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63149534	T	T	63149534	1	4	193	0	1	0	0	0	0	0	0	0	14575	203	7	5		5	SLC22A9	11	63149534	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	71076	63149534	71856982	278	155351											
PPP2R5B	5526	broad.mit.edu	37	chr11	64695897	64695897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaaccacatcttcctccGgtgagtggctgctgcctgcc	11	15	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64695897	T	T	64695897	3	4	193	1	0	0	0	0	1	0	0	0	12494	1130	39	1	740	1	PPP2R5B	11	64695897	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1546363	64695897	70310619	279	155352											
SAPS3	55291	broad.mit.edu	37	chr11	68331951	68331952	+	Intron	INS	-	A	A													gcgagtaatttggttgaaacINSagtcattcgaatgtgtacgg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68331952	A	A	68331951	6	5	193	0	1	1	1	0	0	0	0	0	13950	493	17	0		0	SAPS3	11	68331951	Intron	INS	-	TCGA-67-3770-01A-01D-0969-08	3636054	68331951	66674565	280	155353											
NEU3	10825	broad.mit.edu	37	chr11	74716538	74716538	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtcctgtatgggagcagaaGagtggttgtgtgttcctgtt	15	5	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74716538	A	A	74716538	2	1	193	1	0	0	0	0	0	0	0	1	10438	933	33	4		4	NEU3	11	74716538	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	6384587	74716538	60289978	281	155354											
PRSS23	11098	broad.mit.edu	37	chr11	86544396	86544396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctccagcaccatgactaGgtacatgaacaggaacagcc	8	12	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86544396	T	T	86544396	1	4	193	0	1	0	0	0	0	0	0	0	12726	1015	35	2		2	PRSS23	11	86544396	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	11827858	86544396	48462120	282	155355											
FAT3	120114	broad.mit.edu	37	chr11	92531939	92531939	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaccccctgaactgacataCagcctaatggaaggcagttt	9	11	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92531939	G	G	92531939	4	3	193	1	0	0	0	0	0	1	0	0	5748	489	17	4	5794	4	FAT3	11	92531939	Nonsense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	5987543	92531939	42474577	283	155356											
FAT3	120114	broad.mit.edu	37	chr11	92623916	92623916	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaggccctgccaccctcCcagcctgtctccctggccag	9	19	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92623916	A	A	92623916	2	1	193	1	0	0	0	0	0	0	0	1	5748	610	22	2		2	FAT3	11	92623916	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	91977	92623916	42382600	284	155357											
DYNC2H1	79659	broad.mit.edu	37	chr11	103182882	103182882	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactgtgggaggccaaggtgGgcggatcacctgaggtccgg	18	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103182882	C	C	103182882	1	2	193	0	1	0	0	0	0	0	0	0	4886	1247	43	4		4	DYNC2H1	11	103182882	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	10558966	103182882	31823634	285	155358											
CASP5	838	broad.mit.edu	37	chr11	104874188	104874188	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaagaactttgagagagaGagagagagaaatcctaggaa	12	5	0	6			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104874188	T	T	104874188	1	4	193	0	1	0	0	0	0	0	0	0	2700	957	33	3		3	CASP5	11	104874188	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1691306	104874188	30132328	286	155359											
GRIA4	2893	broad.mit.edu	37	chr11	105481708	105481709	+	5'UTR	DNP	GG	CT	CT													agagagagagcgcgcgccagGgagaggagaaaagaagatga							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	105481709	CT	CT	105481708	1	2	193	0	1	0	0	0	0	0	0	0	6836	1247	43	4		4	GRIA4	11	105481708	5'UTR	DNP	GG	TCGA-67-3770-01A-01D-0969-08	607520	105481708	29524808	287	155360											
NCAM1	4684	broad.mit.edu	37	chr11	113102363	113102363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttcccccccacccccgGcagactctggatgggcacat	8	20	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113102363	T	T	113102363	1	4	193	0	1	0	0	0	0	0	0	0	10297	1218	42	3		3	NCAM1	11	113102363	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	7620655	113102363	21904153	288	155361											
DSCAML1	57453	broad.mit.edu	37	chr11	117340757	117340757	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acttggaagaggaaggggttCtatgttcccactcccaccct	10	12	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117340757	A	A	117340757	1	1	193	0	1	0	0	0	0	0	0	0	4809	928	32	3		3	DSCAML1	11	117340757	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	4238394	117340757	17665759	289	155362											
MCAM	4162	broad.mit.edu	37	chr11	119185142	119185142	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccaaagcaccgagattacAggtgtgagctaccacacctg	9	13	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119185142	G	G	119185142	1	3	193	0	1	0	0	0	0	0	0	0	9461	203	7	5		5	MCAM	11	119185142	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	1844385	119185142	15821374	290	155363											
CACNA1C	775	broad.mit.edu	37	chr12	2224402	2224402	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccacaggttccaactatgGgagcccacgccccgcccatg	10	17	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2224402	C	C	2224402	3	2	193	1	0	0	0	0	1	0	0	0	2566	1232	43	4	68	4	CACNA1C	12	2224402	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08		2224402	131627493	291	155364											
CACNA1C	775	broad.mit.edu	37	chr12	2716322	2716322	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatgcaaagcaaggccccacGagccctgacattcaagggcc	10	14	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2716322	A	A	2716322	1	1	193	0	1	0	0	0	0	0	0	0	2566	1073	37	4		4	CACNA1C	12	2716322	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	491920	2716322	131135573	292	155365											
PARP11	57097	broad.mit.edu	37	chr12	3948721	3948721	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttgaagcgattataggagGatcatttgaaggatatttaa	10	2	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3948721	A	A	3948721	1	1	193	0	1	0	0	0	0	0	0	0	11550	1189	41	4		4	PARP11	12	3948721	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1232399	3948721	129903174	293	155366											
NCAPD2	9918	broad.mit.edu	37	chr12	6626865	6626865	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttgtaagtagttactgcCttggagtcctaatgccagac	10	9	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6626865	T	T	6626865	1	4	193	0	1	0	0	0	0	0	0	0	10300	696	24	4		4	NCAPD2	12	6626865	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	2678144	6626865	127225030	294	155367											
LPCAT3	10162	broad.mit.edu	37	chr12	7092727	7092727	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggaaaagataagaagagTgttatttgtgcctggtgcca	15	4	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7092727	C	C	7092727	1	2	193	0	1	0	0	0	0	0	0	0	8999	1711	59	5		5	LPCAT3	12	7092727	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	465862	7092727	126759168	295	155368											
KLRG1	10219	broad.mit.edu	37	chr12	9148021	9148021	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggggggatactatattctTccccttccctcttcttctct	7	13	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9148021	C	C	9148021	1	2	193	0	1	0	0	0	0	0	0	0	8492	1798	62	5		5	KLRG1	12	9148021	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	2055294	9148021	124703874	296	155369											
LDHB	3945	broad.mit.edu	37	chr12	21788434	21788434	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactaaaggctcgagttaatCacattgtagtttttaaattt	6	5	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21788434	A	A	21788434	1	1	193	0	1	0	0	0	0	0	0	0	8773	841	29	3		3	LDHB	12	21788434	3'UTR	SNP	C	TCGA-67-3770-01A-01D-0969-08	12640413	21788434	112063461	297	155370											
BICD1	636	broad.mit.edu	37	chr12	32520796	32520796	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tattttgctgtattttatttCaagtgtgggctacatagaca	8	5	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32520796	T	T	32520796	1	4	193	0	1	0	0	0	0	0	0	0	1434	841	29	4		4	BICD1	12	32520796	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	10732362	32520796	101331099	298	155371											
TMEM117	84216	broad.mit.edu	37	chr12	44781901	44781901	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttataaacctcatgaatatGggcaatatatcggcccgggg	10	8	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44781901	C	C	44781901	3	2	193	1	0	0	0	0	1	0	0	0	16154	1348	47	4	1017	4	TMEM117	12	44781901	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	12261105	44781901	89069994	299	155372											
SLC38A4	55089	broad.mit.edu	37	chr12	47172034	47172034	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaacatatgagcagaatttCaaagcaaattagaatgctaa	7	5	1	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47172034	G	G	47172034	1	3	193	0	1	0	0	0	0	0	0	0	14720	841	29	4		4	SLC38A4	12	47172034	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	2390133	47172034	86679861	300	155373											
RHEBL1	121268	broad.mit.edu	37	chr12	49463563	49463563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcctgtagcggactagCggcatggcaggagcccgccc	13	15	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49463563	A	A	49463563	2	1	193	1	0	0	0	0	0	0	0	1	13438	755	27	3		3	RHEBL1	12	49463563	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	2291529	49463563	84388332	301	155374											
PRPF40B	25766	broad.mit.edu	37	chr12	50026780	50026780	+	Intron	DEL	C	-	-													gccttgaccaccattctgtgCccccccccccacccagaggg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50026780	-	-	50026780	6	5	193	0	1	1	0	1	0	0	0	0	12678	754	26	0		0	PRPF40B	12	50026780	Intron	DEL	C	TCGA-67-3770-01A-01D-0969-08	563217	50026780	83825115	302	155375											
TMPRSS12	283471	broad.mit.edu	37	chr12	51279140	51279140	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacacttcattttgtgcagGtgatgaagatggagcttttg	11	5	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51279140	A	A	51279140	3	1	193	1	0	0	0	0	1	0	0	0	16367	1261	44	4	778	4	TMPRSS12	12	51279140	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1252360	51279140	82572755	303	155376											
KRT83	3889	broad.mit.edu	37	chr12	52710520	52710520	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaccccaacatgagagCtattggtttttctcttacca	6	13	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52710520	A	A	52710520	1	1	193	0	1	0	0	0	0	0	0	0	8568	812	28	3		3	KRT83	12	52710520	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1431380	52710520	81141375	304	155377											
KRT85	3891	broad.mit.edu	37	chr12	52754854	52754854	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaggagacatggagGggtgagcagctccctgcaat	17	7	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52754854	T	T	52754854	1	4	193	0	1	0	0	0	0	0	0	0	8570	1247	43	2		2	KRT85	12	52754854	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	44334	52754854	81097041	305	155378											
KRT85	3891	broad.mit.edu	37	chr12	52761049	52761049	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctgccgaagcccgtcagCcctcggtagcaggacacccc	12	18	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52761049	T	T	52761049	2	4	193	1	0	0	0	0	0	0	0	1	8570	726	26	4		4	KRT85	12	52761049	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	6195	52761049	81090846	306	155379											
KRT3	3850	broad.mit.edu	37	chr12	53189527	53189527	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaaagccacctccataGccgctcccaaagccacctcc	4	22	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53189527	T	T	53189527	2	4	193	1	0	0	0	0	0	0	0	1	8537	958	34	3		3	KRT3	12	53189527	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	428478	53189527	80662368	307	155380											
HOXC8	3224	broad.mit.edu	37	chr12	54403537	54403537	+	Intron	DEL	C	-	-													ttctctttcccccttggtctCccgcgctccagggtttcccc							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54403537	-	-	54403537	6	5	193	0	1	1	0	1	0	0	0	0	7383	870	30	0		0	HOXC8	12	54403537	Intron	DEL	C	TCGA-67-3770-01A-01D-0969-08	1214010	54403537	79448358	308	155381											
NCKAP1L	3071	broad.mit.edu	37	chr12	54925554	54925554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgtgctaaagcgcatgaCcatcattggggttatcctca	9	9	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54925554	A	A	54925554	3	1	193	1	0	0	0	0	1	0	0	0	10317	507	18	3	2824	3	NCKAP1L	12	54925554	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	522017	54925554	78926341	309	155382											
DCD	117159	broad.mit.edu	37	chr12	55039270	55039270	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgcaccccaagccctcCctaggaatatgggtgtagct	12	12	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55039270	T	T	55039270	1	4	193	0	1	0	0	0	0	0	0	0	4316	638	22	4		4	DCD	12	55039270	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	113716	55039270	78812625	310	155383											
B4GALNT1	2583	broad.mit.edu	37	chr12	58023958	58023958	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgctgtgttggtctggTagcttcggctgctgtaagtg	15	7	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58023958	C	C	58023958	3	2	193	1	0	0	0	0	1	0	0	0	1271	1638	57	5	936	5	B4GALNT1	12	58023958	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	2984688	58023958	75827937	311	155384											
CDK4	1019	broad.mit.edu	37	chr12	58145230	58145230	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatcatcacaccccacctaTaggctgtcttttccctttac	4	15	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58145230	A	A	58145230	1	1	193	0	1	0	0	0	0	0	0	0	3171	1421	49	5		5	CDK4	12	58145230	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	121272	58145230	75706665	312	155385											
ZFC3H1	196441	broad.mit.edu	37	chr12	72038818	72038818	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagagccaaaaggcgaagcTgtaattcagatagttcctct	10	8	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72038818	A	A	72038818	3	1	193	1	0	0	0	0	1	0	0	0	17759	1580	55	5	4979	5	ZFC3H1	12	72038818	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	13893588	72038818	61813077	313	155386											
SLC25A3	5250	broad.mit.edu	37	chr12	98989171	98989171	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggccttagtcatctctgAagaaatacttacttgatttt	7	7	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98989171	G	G	98989171	1	3	193	0	1	0	0	0	0	0	0	0	14607	261	9	5		5	SLC25A3	12	98989171	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	26950353	98989171	34862724	314	155387											
ANKS1B	56899	broad.mit.edu	37	chr12	99837534	99837534	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtgttgggcctgttgagcTgtttctatggttactagttc	13	6	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99837534	G	G	99837534	3	3	193	1	0	0	0	0	1	0	0	0	689	1580	55	5	2606	5	ANKS1B	12	99837534	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	848363	99837534	34014361	315	155388											
CMKLR1	1240	broad.mit.edu	37	chr12	108686420	108686420	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgcacatggctgtcccgAaaacccagtggtagtccatg	10	12	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108686420	G	G	108686420	3	3	193	1	0	0	0	0	1	0	0	0	3611	246	9	5	805	5	CMKLR1	12	108686420	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	8848886	108686420	25165475	316	155389											
CUX2	23316	broad.mit.edu	37	chr12	111786210	111786210	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcaacaggatggggtaaGggagggaggaactcaaccat	14	8	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111786210	A	A	111786210	1	1	193	0	1	0	0	0	0	0	0	0	4098	1015	35	4		4	CUX2	12	111786210	3'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08	3099790	111786210	22065685	317	155390											
WDR66	144406	broad.mit.edu	37	chr12	122380653	122380653	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgggctgtgtgatgtctgtGatattctcaaaagaccagac	11	8	2	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122380653	T	T	122380653	1	4	193	0	1	0	0	0	0	0	0	0	17444	1305	45	3		3	WDR66	12	122380653	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	10594443	122380653	11471242	318	155391											
SETD8	387893	broad.mit.edu	37	chr12	123875097	123875097	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggtgttgtctgattttcatCttttgtattcctcctcctcg	7	11	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123875097	G	G	123875097	1	3	193	0	1	0	0	0	0	0	0	0	14250	928	32	4		4	SETD8	12	123875097	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1494444	123875097	9976798	319	155392											
SFRS8	6433	broad.mit.edu	37	chr12	132250564	132250564	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctattcagaaactttaacTaactgcattgtatgacactt	4	9	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132250564	C	C	132250564	1	2	193	0	1	0	0	0	0	0	0	0	14296	1537	53	5		5	SFRS8	12	132250564	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	8375467	132250564	1601331	320	155393											
EP400	57634	broad.mit.edu	37	chr12	132510236	132510236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccgggcagccctaccttcGagcccctggccctgtggtga	12	18	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132510236	T	T	132510236	3	4	193	1	0	0	0	0	1	0	0	0	5191	1058	37	3	4992	3	EP400	12	132510236	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	259672	132510236	1341659	321	155394											
GALNT9	50614	broad.mit.edu	37	chr12	132685656	132685656	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggccgaacggggccctcgGgggaggtgctacctctccgt	17	14	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132685656	A	A	132685656	1	1	193	0	1	0	0	0	0	0	0	0	6282	1247	43	4		4	GALNT9	12	132685656	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	175420	132685656	1166239	322	155395											
POLE	5426	broad.mit.edu	37	chr12	133256576	133256576	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggggacagtctccactttTgcaattttgccctgaaactt	8	10	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133256576	C	C	133256576	2	2	193	1	0	0	0	0	0	0	0	1	12291	1799	63	5		5	POLE	12	133256576	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	570920	133256576	595319	323	155396											
PSPC1	55269	broad.mit.edu	37	chr13	20279867	20279867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttctggtcccatggcagGaccaggacccattggtgggc	13	13	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20279867	T	T	20279867	3	4	193	1	0	0	0	0	1	0	0	0	12822	1174	41	3	258	3	PSPC1	13	20279867	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08		20279867	94890011	324	155397											
SERP2	387923	broad.mit.edu	37	chr13	44971453	44971453	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgggcatgtgagaaaGccagggatttgacaccacct	13	8	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44971453	T	T	44971453	1	4	193	0	1	0	0	0	0	0	0	0	14198	986	34	3		3	SERP2	13	44971453	3'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08	24691586	44971453	70198425	325	155398											
COL4A1	1282	broad.mit.edu	37	chr13	110862504	110862504	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggattccgggaaatcctCtttcacctttcaacagcatc	7	13	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110862504	G	G	110862504	3	3	193	1	0	0	0	0	1	0	0	0	3721	913	32	4	4661	4	COL4A1	13	110862504	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	65891051	110862504	4307374	326	155399											
ANKRD10	55608	broad.mit.edu	37	chr13	111535917	111535917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgattcctgcaacgacaGggggtctgcattgctgacac	11	11	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111535917	A	A	111535917	1	1	193	0	1	0	0	0	0	0	0	0	638	1015	35	4		4	ANKRD10	13	111535917	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	673413	111535917	3633961	327	155400											
F10	2159	broad.mit.edu	37	chr13	113797968	113797968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacctgaggggaggccaaCgctcggacagctgcgctcac	14	14	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113797968	A	A	113797968	1	1	193	0	1	0	0	0	0	0	0	0	5379	551	19	3		3	F10	13	113797968	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	2262051	113797968	1371910	328	155401											
OR4K15	81127	broad.mit.edu	37	chr14	20443793	20443793	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacagaatttgtgttgcTgggactgtctagttcaaggg	15	5	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20443793	A	A	20443793	3	1	193	1	0	0	0	0	1	0	0	0	11164	1580	55	5	118	5	OR4K15	14	20443793	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08		20443793	86905747	329	155402											
PNP	4860	broad.mit.edu	37	chr14	20940346	20940346	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtatggcctttccctctgTgccagcttctccgtccctgc	8	16	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20940346	A	A	20940346	1	1	193	0	1	0	0	0	0	0	0	0	12258	1711	59	5		5	PNP	14	20940346	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	496553	20940346	86409194	330	155403											
HAUS4	54930	broad.mit.edu	37	chr14	23421768	23421768	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgagcctgctcctttgcTagggtgaggcttaagccact	11	12	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23421768	C	C	23421768	2	2	193	1	0	0	0	0	0	0	0	1	7034	1509	53	5		5	HAUS4	14	23421768	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	2481422	23421768	83927772	331	155404											
MYH7	4625	broad.mit.edu	37	chr14	23887584	23887584	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcgcagtcatgccgggccGactgcagtgcgtgggccagg	18	12	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23887584	A	A	23887584	3	1	193	1	0	0	0	0	1	0	0	0	10133	1059	37	4	1847	4	MYH7	14	23887584	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	465816	23887584	83461956	332	155405											
SLC25A21	89874	broad.mit.edu	37	chr14	37198875	37198875	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cattatgttaaccagcatttCaaaaaatgataaactatcta	3	7	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37198875	T	T	37198875	1	4	193	0	1	0	0	0	0	0	0	0	14598	841	29	4		4	SLC25A21	14	37198875	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	13311291	37198875	70150665	333	155406											
MDGA2	161357	broad.mit.edu	37	chr14	47670272	47670272	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcggcccaggagatggccTcgaccatcaagcaccaagac	12	14	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47670272	A	A	47670272	1	1	193	0	1	0	0	0	0	0	0	0	9500	1566	54	5		5	MDGA2	14	47670272	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	10471397	47670272	59679268	334	155407											
CDKL1	8814	broad.mit.edu	37	chr14	50877348	50877348	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttggagacacgagagtCacaaggcgggaaattactct	11	8	3	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50877348	G	G	50877348	3	3	193	1	0	0	0	0	1	0	0	0	3183	841	29	4		4	CDKL1	14	50877348	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	3207076	50877348	56472192	335	155408											
FBXO34	55030	broad.mit.edu	37	chr14	55880641	55880641	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcactcctttttgaaaagcaGccattcccttgatgtctaca	6	12	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55880641	A	A	55880641	1	1	193	0	1	0	0	0	0	0	0	0	5801	986	34	4		4	FBXO34	14	55880641	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	5003293	55880641	51468899	336	155409											
C14orf105	55195	broad.mit.edu	37	chr14	57960335	57960335	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaattctgattgaatgcAaagtccacacggccagccga	8	12	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57960335	G	G	57960335	2	3	193	1	0	0	0	0	0	0	0	1	1750	127	5	5		5	C14orf105	14	57960335	Silent	SNP	A	TCGA-67-3770-01A-01D-0969-08	2079694	57960335	49389205	337	155410											
SYNE2	23224	broad.mit.edu	37	chr14	64484334	64484336	+	In_Frame_Del	DEL	TAC	-	-													taaatgagaagacagaagatTactatgaaaatcttggtcga					rs143578863	by1000genomes	TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64484336	-	-	64484334	7	5	193	1	0	1	0	1	0	0	0	0	15565	1754	61	0	5039	0	SYNE2	14	64484334	In_Frame_Del	DEL	TAC	TCGA-67-3770-01A-01D-0969-08	6523999	64484334	42865206	338	155411											
ESR2	2100	broad.mit.edu	37	chr14	64726780	64726780	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccacctctaggcatgagaGgtggccaacaggtgagtgtc	14	10	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64726780	C	C	64726780	1	2	193	0	1	0	0	0	0	0	0	0	5299	1015	35	4		4	ESR2	14	64726780	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	242446	64726780	42622760	339	155412											
SMOC1	64093	broad.mit.edu	37	chr14	70352712	70352713	+	Intron	INS	-	T	T													cacaaagcgggtgaggtctcINSttttgggctggatgtcctgt							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70352713	T	T	70352712	6	5	193	0	1	1	1	0	0	0	0	0	14915	928	32	0		0	SMOC1	14	70352712	Intron	INS	-	TCGA-67-3770-01A-01D-0969-08	5625932	70352712	36996828	340	155413											
SIPA1L1	26037	broad.mit.edu	37	chr14	72117374	72117374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagagagggaggatgtaGcaccagaacagttgaagatc	14	7	0	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72117374	T	T	72117374	1	4	193	0	1	0	0	0	0	0	0	0	14442	986	34	3		3	SIPA1L1	14	72117374	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1764662	72117374	35232166	341	155414											
NRXN3	9369	broad.mit.edu	37	chr14	80130075	80130075	+	Intron	SNP	C	A	A													tcaagtttaaagggagagaaCttcgtggttggtgataacta							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80130075	A	A	80130075	1	1	193	0	1	0	0	0	0	0	0	0	10762	580	20	3		3	NRXN3	14	80130075	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	8012701	80130075	27219465	342	155415	665	2									
NRXN3	9369	broad.mit.edu	37	chr14	80130077	80130077	+	Intron	SNP	T	A	A													aagtttaaagggagagaactTcgtggttggtgataactatg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80130077	A	A	80130077	1	1	193	0	1	0	0	0	0	0	0	0	10762	1798	62	5		5	NRXN3	14	80130077	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	2	80130077	27219463	343	155416	665	2									
GABRA5	2558	broad.mit.edu	37	chr15	27128556	27128556	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttaaggggcccatgcagCgcctccctctcaacaacctc	9	16	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27128556	T	T	27128556	3	4	193	1	0	0	0	0	1	0	0	0	6224	768	27	4	363	4	GABRA5	15	27128556	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08		27128556	75402836	344	155417											
OCA2	4948	broad.mit.edu	37	chr15	28326973	28326973	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtctgcaggagctccacCgccggcgcgccggggtaccg	16	16	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28326973	A	A	28326973	2	1	193	1	0	0	0	0	0	0	0	1	10910	639	23	1		1	OCA2	15	28326973	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	1198417	28326973	74204419	345	155418											
HERC2	8924	broad.mit.edu	37	chr15	28424343	28424343	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accacattcaaagctgacagTgtctcagagaacgaaggaac	9	10	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28424343	C	C	28424343	2	2	193	1	0	0	0	0	0	0	0	1	7125	1683	59	5		5	HERC2	15	28424343	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	97370	28424343	74107049	346	155419											
C15orf55	256646	broad.mit.edu	37	chr15	34648810	34648810	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatctgtgggcagaaggTtgcttcccattgctagaaag	13	7	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34648810	C	C	34648810	2	2	193	1	0	0	0	0	0	0	0	1	1816	1712	60	5		5	C15orf55	15	34648810	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	6224467	34648810	67882582	347	155420											
DUOX2	50506	broad.mit.edu	37	chr15	45401234	45401234	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatctgactattggcacTacggttcttccctcctggct	8	12	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45401234	C	C	45401234	1	2	193	0	1	0	0	0	0	0	0	0	4841	1537	53	5		5	DUOX2	15	45401234	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	10752424	45401234	57130158	348	155421											
DENND4A	10260	broad.mit.edu	37	chr15	65998421	65998421	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctcaaacattctgcctcTtgaatacctgtactgtaaag	5	10	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65998421	A	A	65998421	1	1	193	0	1	0	0	0	0	0	0	0	4473	1624	56	5		5	DENND4A	15	65998421	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	20597187	65998421	36532971	349	155422											
GOLGA6A	342096	broad.mit.edu	37	chr15	74365054	74365054	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccttcctcctggggctctCtcctcttcctctgagtggtc	8	18	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74365054	A	A	74365054	1	1	193	0	1	0	0	0	0	0	0	0	6621	928	32	3		3	GOLGA6A	15	74365054	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	8366633	74365054	28166338	350	155423											
TMC3	342125	broad.mit.edu	37	chr15	81660847	81660847	+	Intron	DEL	A	-	-													gtctaatttttggtaatcagAaaacaccttaaaattttttt					rs71451582		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	81660847	-	-	81660847	6	5	193	0	1	1	0	1	0	0	0	0	16109	261	9	0		0	TMC3	15	81660847	Intron	DEL	A	TCGA-67-3770-01A-01D-0969-08	7295793	81660847	20870545	351	155424											
SMG1	23049	broad.mit.edu	37	chr16	18823123	18823123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctattcggatcaacatctCggccctctaacttggctttc	6	14	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18823123	A	A	18823123	3	1	193	1	0	0	0	0	1	0	0	0	14909	884	31	3	125	3	SMG1	16	18823123	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08		18823123	71531630	352	155425											
COQ7	10229	broad.mit.edu	37	chr16	19087069	19087069	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaccgccttgctcgggaagGaaggtgccatggcctgcacc	15	13	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19087069	T	T	19087069	4	4	193	1	0	0	0	0	0	1	0	0	3782	1175	41	3	408	3	COQ7	16	19087069	Nonsense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	263946	19087069	71267684	353	155426											
GPRC5B	51704	broad.mit.edu	37	chr16	19871805	19871805	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaagagaaattctgattctCtggaacttaaagtctttcac	7	7	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19871805	T	T	19871805	1	4	193	0	1	0	0	0	0	0	0	0	6791	928	32	4		4	GPRC5B	16	19871805	3'UTR	SNP	C	TCGA-67-3770-01A-01D-0969-08	784736	19871805	70482948	354	155427											
GP2	2813	broad.mit.edu	37	chr16	20331132	20331132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagatgtttatgtgtatGtgtatgtaggtgtatctcaa	10	3	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20331132	T	T	20331132	1	4	193	0	1	0	0	0	0	0	0	0	6647	1392	48	3		3	GP2	16	20331132	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	459327	20331132	70023621	355	155428											
QPRT	23475	broad.mit.edu	37	chr16	29708623	29708623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccccagttctgcgggcCgcacatagacgtcatctcca	8	18	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29708623	A	A	29708623	3	1	193	1	0	0	0	0	1	0	0	0	12984	652	23	1	799	1	QPRT	16	29708623	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	9377491	29708623	60646130	356	155429											
ITGAM	3684	broad.mit.edu	37	chr16	31273080	31273080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttccaagagaacgcaagGggcttcgggcagagcgtggt	15	10	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31273080	T	T	31273080	3	4	193	1	0	0	0	0	1	0	0	0	7957	1223	43	2	102	2	ITGAM	16	31273080	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1564457	31273080	59081673	357	155430											
ITGAD	3681	broad.mit.edu	37	chr16	31409287	31409287	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctggcactgagggtgaGcaggcgtgaggcctgtgtct	17	9	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31409287	A	A	31409287	1	1	193	0	1	0	0	0	0	0	0	0	7954	986	34	4		4	ITGAD	16	31409287	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	136207	31409287	58945466	358	155431											
ABCC11	85320	broad.mit.edu	37	chr16	48261885	48261885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggaaacctagtagagGggccacaaggataagaatga	15	6	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48261885	T	T	48261885	1	4	193	0	1	0	0	0	0	0	0	0	51	1247	43	2		2	ABCC11	16	48261885	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	16852598	48261885	42092868	359	155432											
IRX6	79190	broad.mit.edu	37	chr16	55361675	55361675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccaggtgtccacctggttCgccaacgcacgccggcgcct	11	18	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55361675	A	A	55361675	3	1	193	1	0	0	0	0	1	0	0	0	7918	883	31	3	605	3	IRX6	16	55361675	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	7099790	55361675	34993078	360	155433											
AMFR	267	broad.mit.edu	37	chr16	56396498	56396498	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggacgtacgcatgaggcagGagtagaagctgcctgctgca	16	9	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56396498	T	T	56396498	1	4	193	0	1	0	0	0	0	0	0	0	571	1189	41	3		3	AMFR	16	56396498	3'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08	1034823	56396498	33958255	361	155434											
MT1A	4489	broad.mit.edu	37	chr16	56673680	56673680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaactaagtgtcctctgggGctggggacagagcttgggcc	16	9	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56673680	T	T	56673680	1	4	193	0	1	0	0	0	0	0	0	0	9991	1218	42	3		3	MT1A	16	56673680	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	277182	56673680	33681073	362	155435											
NLRC5	84166	broad.mit.edu	37	chr16	57104587	57104587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtggttaatggatggtGgaagtgggtgagtggtgggg	25	0	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57104587	T	T	57104587	1	4	193	0	1	0	0	0	0	0	0	0	10565	1363	47	2		2	NLRC5	16	57104587	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	430907	57104587	33250166	363	155436											
PKD1L2	114780	broad.mit.edu	37	chr16	81187704	81187704	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggatcagccaggtggtggGgctctctctctccatccagg	14	13	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81187704	C	C	81187704	3	2	193	1	0	0	0	0	1	0	0	0	12060	1232	43	4	3182	4	PKD1L2	16	81187704	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	24083117	81187704	9167049	364	155437											
ASPA	443	broad.mit.edu	37	chr17	3385072	3385072	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaggaataactttttaattCagatgtttcattacattaag	5	6	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3385072	T	T	3385072	4	4	193	1	0	0	0	0	0	1	0	0	1054	827	29	4	418	4	ASPA	17	3385072	Nonsense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08		3385072	77810138	365	155438											
ENO3	2027	broad.mit.edu	37	chr17	4857038	4857038	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaatgccatcctgggcgtGtccttggccgtgtgtaaggc	14	12	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4857038	T	T	4857038	2	4	193	1	0	0	0	0	0	0	0	1	5165	1364	48	3		3	ENO3	17	4857038	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	1471966	4857038	76338172	366	155439											
USP6	9098	broad.mit.edu	37	chr17	5036453	5036453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgcctattcgtgcaagTgtcaccttgctgggagggaa	13	10	1	0	rs116916533	by1000genomes	TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5036453	C	C	5036453	1	2	193	0	1	0	0	0	0	0	0	0	17213	1711	59	5		5	USP6	17	5036453	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	179415	5036453	76158757	367	155440											
TEKT1	83659	broad.mit.edu	37	chr17	6704148	6704149	+	Missense_Mutation	DNP	GG	CT	CT													acacagctccacgttcggccGgtgtgtcctggtctccaagc					rs150562113		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	6704149	CT	CT	6704148	3	2	193	1	0	0	0	0	1	0	0	0	15874	1115	39	4	297	4	TEKT1	17	6704148	Missense_Mutation	DNP	GG	TCGA-67-3770-01A-01D-0969-08	1667695	6704148	74491062	368	155441											
TP53	7157	broad.mit.edu	37	chr17	7578469	7578469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggcgcggacgcgggtgCcgggcgggggtgtggaatca	21	10	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578469	A	A	7578469	3	1	193	1	0	0	0	0	1	0	0	0	16505	739	26	3	837	3	TP53	17	7578469	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	874321	7578469	73616741	369	155442											
WRAP53	55135	broad.mit.edu	37	chr17	7592605	7592605	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttcctggtcagagttcagCacccaacctgagaacttctt	9	12	3	2	rs147817526		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7592605	T	T	7592605	2	4	193	1	0	0	0	0	0	0	0	1	17527	709	25	4		4	WRAP53	17	7592605	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	14136	7592605	73602605	370	155443											
MYH1	4619	broad.mit.edu	37	chr17	10411593	10411594	+	Intron	DNP	CC	GA	GA													caatctacccaccttggcctCccaaaatgctgggattacag							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	10411594	GA	GA	10411593	1	3	193	0	1	0	0	0	0	0	0	0	10123	870	30	4		4	MYH1	17	10411593	Intron	DNP	CC	TCGA-67-3770-01A-01D-0969-08	2818988	10411593	70783617	371	155444											
SLC47A2	146802	broad.mit.edu	37	chr17	19618558	19618558	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagcggccaggtcagactcGgggccacaggtgcccacaca	13	15	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19618558	C	C	19618558	1	2	193	0	1	0	0	0	0	0	0	0	14762	1131	39	4		4	SLC47A2	17	19618558	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	9206965	19618558	61576652	372	155445											
NOS2	4843	broad.mit.edu	37	chr17	26084526	26084527	+	Intron	DNP	CC	AA	AA													tgcttgaatctggtttagacCctaaccctgctcagcacctg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26084527	AA	AA	26084526	1	1	193	0	1	0	0	0	0	0	0	0	10638	638	22	2		2	NOS2	17	26084526	Intron	DNP	CC	TCGA-67-3770-01A-01D-0969-08	6465968	26084526	55110684	373	155446											
GOSR1	9527	broad.mit.edu	37	chr17	28808413	28808413	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttgccattcattgttttAttttttagtgacttattaaa	5	4	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28808413	G	G	28808413	1	3	193	0	1	0	0	0	0	0	0	0	6641	464	16	5		5	GOSR1	17	28808413	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	2723887	28808413	52386797	374	155447											
NF1	4763	broad.mit.edu	37	chr17	29679225	29679225	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggagcaaacgatggttGtatttgtcaccatattaatt	10	5	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29679225	C	C	29679225	1	2	193	0	1	0	0	0	0	0	0	0	10451	1392	48	4		4	NF1	17	29679225	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	870812	29679225	51515985	375	155448											
MRM1	79922	broad.mit.edu	37	chr17	34963890	34963890	+	Intron	DEL	A	-	-													acatggcaaaacctcatctcAaaaaaaaaaaatgcaaaaac					rs35964238		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34963890	-	-	34963890	6	5	193	0	1	1	0	1	0	0	0	0	9865	145	5	0		0	MRM1	17	34963890	Intron	DEL	A	TCGA-67-3770-01A-01D-0969-08	5284665	34963890	46231320	376	155449											
MED24	9862	broad.mit.edu	37	chr17	38192396	38192396	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggctgtgaggacagaagaGtaggacaccatctggagaga	15	6	1	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38192396	A	A	38192396	2	1	193	1	0	0	0	0	0	0	0	1	9535	1024	36	4		4	MED24	17	38192396	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	3228506	38192396	43002814	377	155450											
KRT32	3882	broad.mit.edu	37	chr17	39620561	39620561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaccattcctccacgtcCctgcggttggcctccaccat	7	17	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39620561	A	A	39620561	3	1	193	1	0	0	0	0	1	0	0	0	8539	622	22	2	519	2	KRT32	17	39620561	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	1428165	39620561	41574649	378	155451											
KRT15	3866	broad.mit.edu	37	chr17	39671965	39671965	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggggagtgacagatgcaTagacacatcaggctagaaag	14	7	1	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39671965	A	A	39671965	1	1	193	0	1	0	0	0	0	0	0	0	8523	1421	49	5		5	KRT15	17	39671965	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	51404	39671965	41523245	379	155452											
ACLY	47	broad.mit.edu	37	chr17	40029887	40029887	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgtgactggactttctgtCcttggaagacttaggaatag	11	7	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40029887	A	A	40029887	1	1	193	0	1	0	0	0	0	0	0	0	143	870	30	3		3	ACLY	17	40029887	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	357922	40029887	41165323	380	155453											
MPP3	4356	broad.mit.edu	37	chr17	41898571	41898571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagctacttggaaatacaCtgcacgtatgttcttaactg	8	8	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41898571	A	A	41898571	1	1	193	0	1	0	0	0	0	0	0	0	9829	580	20	3		3	MPP3	17	41898571	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1868684	41898571	39296639	381	155454											
MPP2	4355	broad.mit.edu	37	chr17	41954991	41954991	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacaaggtaccccatgaatGcccacctccctggcagtgca	9	16	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41954991	A	A	41954991	1	1	193	0	1	0	0	0	0	0	0	0	9828	1334	46	4		4	MPP2	17	41954991	3'UTR	SNP	G	TCGA-67-3770-01A-01D-0969-08	56420	41954991	39240219	382	155455											
EFTUD2	9343	broad.mit.edu	37	chr17	42937719	42937719	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggacatggcaatgactgtgGattagtcccgtttgtgctca	12	8	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42937719	A	A	42937719	1	1	193	0	1	0	0	0	0	0	0	0	5001	1189	41	4		4	EFTUD2	17	42937719	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	982728	42937719	38257491	383	155456											
ITGA3	3675	broad.mit.edu	37	chr17	48149606	48149606	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccctcctcccagcacccCtactgactgagcaccagctg	6	21	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48149606	G	G	48149606	1	3	193	0	1	0	0	0	0	0	0	0	7947	696	24	4		4	ITGA3	17	48149606	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	5211887	48149606	33045604	384	155457											
KIF2B	84643	broad.mit.edu	37	chr17	51900791	51900791	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggggacagcctggatGtgagggtccccagcaaacct	13	13	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51900791	T	T	51900791	3	4	193	1	0	0	0	0	1	0	0	0	8368	1377	48	3	399	3	KIF2B	17	51900791	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	3751185	51900791	29294419	385	155458											
EPX	8288	broad.mit.edu	37	chr17	56270454	56270454	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactgcatagcagaggccaaGttgctggtggatgctgccta	14	9	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56270454	C	C	56270454	3	2	193	1	0	0	0	0	1	0	0	0	5242	1020	36	4	138	4	EPX	17	56270454	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	4369663	56270454	24924756	386	155459											
APOH	350	broad.mit.edu	37	chr17	64208360	64208360	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacaatcatttcttaaatGtggtaaatagctaagccaaa	6	6	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64208360	A	A	64208360	1	1	193	0	1	0	0	0	0	0	0	0	806	1392	48	4		4	APOH	17	64208360	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	7937906	64208360	16986850	387	155460											
NOL11	25926	broad.mit.edu	37	chr17	65715741	65715741	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaacttaattgcttttaAtgtttgaagttgacttcttg	6	4	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65715741	G	G	65715741	1	3	193	0	1	0	0	0	0	0	0	0	10616	116	4	5		5	NOL11	17	65715741	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	1507381	65715741	15479469	388	155461											
ABCA5	23461	broad.mit.edu	37	chr17	67300882	67300882	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaaataacaaagaagcTgtcgcaatgactgccataag	10	7	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67300882	C	C	67300882	2	2	193	1	0	0	0	0	0	0	0	1	35	1567	55	5		5	ABCA5	17	67300882	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	1585141	67300882	13894328	389	155462											
GPR142	350383	broad.mit.edu	37	chr17	72368476	72368476	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggcgccccgggtcttcGtcatgctctaccacatgtac	11	14	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72368476	C	C	72368476	3	2	193	1	0	0	0	0	1	0	0	0	6715	1145	40	4	1140	4	GPR142	17	72368476	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	5067594	72368476	8826734	390	155463											
UNK	85451	broad.mit.edu	37	chr17	73813013	73813013	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtacgtgtccatcctggggAgtgggtgggcaccatgcctg	16	11	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73813013	T	T	73813013	1	4	193	0	1	0	0	0	0	0	0	0	17126	319	11	5		5	UNK	17	73813013	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	1444537	73813013	7382197	391	155464											
TNRC6C	57690	broad.mit.edu	37	chr17	76060929	76060929	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagccacccagcagtgGcagcgggtggggagatcacc	18	11	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76060929	A	A	76060929	3	1	193	1	0	0	0	0	1	0	0	0	16465	1203	42	4	2528	4	TNRC6C	17	76060929	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	2247916	76060929	5134281	392	155465											
CANT1	124583	broad.mit.edu	37	chr17	76992923	76992923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggctaagggtaagggggCcgcaggtcagagcaagaggg	19	8	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76992923	A	A	76992923	1	1	193	0	1	0	0	0	0	0	0	0	2643	754	26	3		3	CANT1	17	76992923	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	931994	76992923	4202287	393	155466											
EPB41L3	23136	broad.mit.edu	37	chr18	5437893	5437893	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatctcatcagatgtttgctCtcgttcatttgccttttgtt	6	9	4	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5437893	G	G	5437893	1	3	193	0	1	0	0	0	0	0	0	0	5196	928	32	4		4	EPB41L3	18	5437893	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08		5437893	72639355	394	155467											
LAMA1	284217	broad.mit.edu	37	chr18	6973046	6973046	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttcagaagaactttcGtaatgttaccttgatttgtc	7	8	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6973046	A	A	6973046	1	1	193	0	1	0	0	0	0	0	0	0	8677	1160	40	4		4	LAMA1	18	6973046	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1535153	6973046	71104202	395	155468											
PIAS2	9063	broad.mit.edu	37	chr18	44426479	44426479	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaaataaagagatgatattCaggaaagctcagagttaaag	10	3	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44426479	A	A	44426479	1	1	193	0	1	0	0	0	0	0	0	0	11971	841	29	3		3	PIAS2	18	44426479	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	37453433	44426479	33650769	396	155469											
ABCA7	10347	broad.mit.edu	37	chr19	1051732	1051732	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggctactgctcaaataccGagacagtaagagttggggat	14	7	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1051732	A	A	1051732	1	1	193	0	1	0	0	0	0	0	0	0	37	1073	37	4		4	ABCA7	19	1051732	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08		1051732	58077251	397	155470											
CSNK1G2	1455	broad.mit.edu	37	chr19	1969835	1969835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggagaatgtccaaggccGgcgggggccggagcagccac	18	13	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1969835	T	T	1969835	3	4	193	1	0	0	0	0	1	0	0	0	3989	1116	39	1	66	1	CSNK1G2	19	1969835	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	918103	1969835	57159148	398	155471											
AP3D1	8943	broad.mit.edu	37	chr19	2127038	2127038	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccagctttccttctcaGttccagcaggggtggcgctc	11	15	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2127038	C	C	2127038	1	2	193	0	1	0	0	0	0	0	0	0	748	1044	36	4		4	AP3D1	19	2127038	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	157203	2127038	57001945	399	155472											
CREB3L3	84699	broad.mit.edu	37	chr19	4168422	4168422	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgcaagaaagcaggaagaaGaagaaggaatatatcgatgg	14	4	0	4			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4168422	A	A	4168422	2	1	193	1	0	0	0	0	0	0	0	1	3890	933	33	4		4	CREB3L3	19	4168422	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	2041384	4168422	54960561	400	155473											
PLIN3	10226	broad.mit.edu	37	chr19	4859660	4859660	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacttgtccagccccctgTgggcgtattcgctggctgat	11	14	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4859660	C	C	4859660	3	2	193	1	0	0	0	0	1	0	0	0	12186	1696	59	5	1034	5	PLIN3	19	4859660	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	691238	4859660	54269323	401	155474											
TNFSF9	8744	broad.mit.edu	37	chr19	6535039	6535039	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gactcttccgggtgacccccGaaatcccagccggactccct	9	18	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6535039	C	C	6535039	3	2	193	1	0	0	0	0	1	0	0	0	16435	1059	37	4	737	4	TNFSF9	19	6535039	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1675379	6535039	52593944	402	155475											
VAV1	7409	broad.mit.edu	37	chr19	6825306	6825306	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagccctcacccttccctCcgagtaggacctgcttcgtg	8	19	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6825306	A	A	6825306	1	1	193	0	1	0	0	0	0	0	0	0	17258	870	30	3		3	VAV1	19	6825306	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	290267	6825306	52303677	403	155476											
EMR1	2015	broad.mit.edu	37	chr19	6901606	6901606	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagagaagtaaaggactatGgctacttttccaatttctga	9	6	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6901606	A	A	6901606	1	1	193	0	1	0	0	0	0	0	0	0	5146	1363	47	4		4	EMR1	19	6901606	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	76300	6901606	52227377	404	155477											
EMR1	2015	broad.mit.edu	37	chr19	6935052	6935052	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaggcagaggctttccAgtgttaatgccgaagtctca	11	10	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6935052	T	T	6935052	3	4	193	1	0	0	0	0	1	0	0	0	5146	188	7	5	2414	5	EMR1	19	6935052	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	33446	6935052	52193931	405	155478											
MUC16	94025	broad.mit.edu	37	chr19	9021116	9021116	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccagggtgacccatgtcctCcccatactgcaggttggtga	12	13	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9021116	A	A	9021116	4	1	193	1	0	0	0	0	0	1	0	0	10067	864	30	3	6580	3	MUC16	19	9021116	Nonsense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	2086064	9021116	50107867	406	155479											
MUC16	94025	broad.mit.edu	37	chr19	9071071	9071071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacacttgtgtcccccaGggtggaggtggtactcatca	13	10	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9071071	T	T	9071071	3	4	193	1	0	0	0	0	1	0	0	0	10067	991	35	2	27476	2	MUC16	19	9071071	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	49955	9071071	50057912	407	155480											
HOOK2	29911	broad.mit.edu	37	chr19	12875938	12875938	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgggctgacctccgggctGgcttctcttttgtcccagtg	13	12	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12875938	C	C	12875938	1	2	193	0	1	0	0	0	0	0	0	0	7350	1363	47	4		4	HOOK2	19	12875938	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	3804867	12875938	46253045	408	155481											
MAST1	22983	broad.mit.edu	37	chr19	12951309	12951309	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaccagcacttcacccAcgctaccgagaccccactcc	5	21	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12951309	T	T	12951309	3	4	193	1	0	0	0	0	1	0	0	0	9416	159	6	5	139	5	MAST1	19	12951309	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	75371	12951309	46177674	409	155482											
MAST1	22983	broad.mit.edu	37	chr19	12976793	12976793	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaatcccttccgtcccaGgcggcgcttttgaggtgaag	13	12	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12976793	T	T	12976793	5	4	193	1	0	0	0	0	0	0	1	0	9416	1014	35	2	1972	2	MAST1	19	12976793	Splice_Site	SNP	G	TCGA-67-3770-01A-01D-0969-08	25484	12976793	46152190	410	155483											
C19orf57	79173	broad.mit.edu	37	chr19	14003571	14003571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgcacctgcgctgggCtcagcctggctgattttaga	14	11	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14003571	A	A	14003571	1	1	193	0	1	0	0	0	0	0	0	0	1958	812	28	3		3	C19orf57	19	14003571	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1026778	14003571	45125412	411	155484											
EMR2	30817	broad.mit.edu	37	chr19	14884604	14884604	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgctgggagccaccacAcctgccctctttctcttttc	7	15	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14884604	C	C	14884604	1	2	193	0	1	0	0	0	0	0	0	0	5147	174	6	5		5	EMR2	19	14884604	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	881033	14884604	44244379	412	155485											
CYP4F22	126410	broad.mit.edu	37	chr19	15651310	15651310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaactgagcgctctgtctGtccggcgccagtatcgcttg	12	12	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15651310	T	T	15651310	3	4	193	1	0	0	0	0	1	0	0	0	4222	1377	48	3	743	3	CYP4F22	19	15651310	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	766706	15651310	43477673	413	155486											
OR10H4	126541	broad.mit.edu	37	chr19	16060247	16060247	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagcccccgtgactgtgccCatcttgtggcctgtacctgg	12	14	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16060247	G	G	16060247	3	3	193	1	0	0	0	0	1	0	0	0	11002	594	21	4	432	4	OR10H4	19	16060247	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	408937	16060247	43068736	414	155487											
RAB8A	4218	broad.mit.edu	37	chr19	16232695	16232695	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtcactgtgcattggttaccGaagcctagatgtttctgtgg	12	8	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16232695	C	C	16232695	1	2	193	0	1	0	0	0	0	0	0	0	13064	1073	37	4		4	RAB8A	19	16232695	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	172448	16232695	42896288	415	155488											
PLVAP	83483	broad.mit.edu	37	chr19	17488189	17488189	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagtgcttatattactcCtcttaatacttcctctgcct	7	11	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17488189	T	T	17488189	1	4	193	0	1	0	0	0	0	0	0	0	12211	696	24	4		4	PLVAP	19	17488189	5'Flank	SNP	C	TCGA-67-3770-01A-01D-0969-08	1255494	17488189	41640794	416	155489											
FAM129C	199786	broad.mit.edu	37	chr19	17643134	17643134	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcggggccacccaccccgGtggcagccgatcttctgtgt	12	16	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17643134	T	T	17643134	2	4	193	1	0	0	0	0	0	0	0	1	5484	1248	44	3		3	FAM129C	19	17643134	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	154945	17643134	41485849	417	155490											
DDX49	54555	broad.mit.edu	37	chr19	19033422	19033422	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatccccagggtgagcacCgtggagcagctggaccagcg	14	14	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19033422	T	T	19033422	2	4	193	1	0	0	0	0	0	0	0	1	4399	639	23	4		4	DDX49	19	19033422	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	1390288	19033422	40095561	418	155491											
ZNF208	7757	broad.mit.edu	37	chr19	22154060	22154060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaccagctgaaggctttgCcacattcttcacatttgtag	7	10	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22154060	A	A	22154060	3	1	193	1	0	0	0	0	1	0	0	0	17892	739	26	3	70	3	ZNF208	19	22154060	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	3120638	22154060	36974923	419	155492											
GRAMD1A	57655	broad.mit.edu	37	chr19	35500129	35500129	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgagccagaaccaggcAccatggtggagaagggatca	13	11	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35500129	G	G	35500129	3	3	193	1	0	0	0	0	1	0	0	0	6813	159	6	5	121	5	GRAMD1A	19	35500129	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	13346069	35500129	23628854	420	155493											
RABAC1	10567	broad.mit.edu	37	chr19	42461330	42461330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgccctctcccagagtaaCccctgctgccccccaacaat	5	20	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42461330	A	A	42461330	1	1	193	0	1	0	0	0	0	0	0	0	13068	522	18	3		3	RABAC1	19	42461330	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	6961201	42461330	16667653	421	155494											
PSG8	440533	broad.mit.edu	37	chr19	43359723	43359724	+	Missense_Mutation	DNP	CC	AA	AA													ctcacctgtgagcaggacccCcttccatttgatgtgctgtg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	43359724	AA	AA	43359723	3	1	193	1	0	0	0	0	1	0	0	0	12767	638	22	2		2	PSG8	19	43359723	Missense_Mutation	DNP	CC	TCGA-67-3770-01A-01D-0969-08	898393	43359723	15769260	422	155495											
PSG6	5675	broad.mit.edu	37	chr19	43519798	43519798	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccagggcagggagtcatgGccacctcggatgtccaaaag	13	12	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43519798	C	C	43519798	1	2	193	0	1	0	0	0	0	0	0	0	12765	1218	42	4		4	PSG6	19	43519798	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	160075	43519798	15609185	423	155496											
NAPA	8775	broad.mit.edu	37	chr19	48017995	48017995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttattgcaggttcctctcCgtcccctcggcccgagctct	8	18	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48017995	A	A	48017995	1	1	193	0	1	0	0	0	0	0	0	0	10255	667	23	1		1	NAPA	19	48017995	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	4498197	48017995	11110988	424	155497											
ALDH16A1	126133	broad.mit.edu	37	chr19	49964050	49964050	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaaacacctagcctcaaggGatcctcttgcctcatttttt	5	12	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49964050	T	T	49964050	1	4	193	0	1	0	0	0	0	0	0	0	488	1189	41	3		3	ALDH16A1	19	49964050	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	1946055	49964050	9164933	425	155498											
FLT3LG	2323	broad.mit.edu	37	chr19	49983708	49983708	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcactggcagaggacgcggcGgaggacaccccgccctgggg	18	14	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49983708	A	A	49983708	3	1	193	1	0	0	0	0	1	0	0	0	6001	1116	39	4	657	4	FLT3LG	19	49983708	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	19658	49983708	9145275	426	155499											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52149131	52149131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatggtcctcgggcctggGggtgagggtgagctccgagg	20	10	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52149131	T	T	52149131	3	4	193	1	0	0	0	0	1	0	0	0	14422	1232	43	2	606	2	SIGLEC14	19	52149131	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	2165423	52149131	6979852	427	155500											
ZNF611	81856	broad.mit.edu	37	chr19	53208559	53208559	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccactatgaactctatgatgGcatacaaggtatgacctgtg	9	9	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53208559	C	C	53208559	3	2	193	1	0	0	0	0	1	0	0	0	18164	1195	42	4	372	4	ZNF611	19	53208559	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1059428	53208559	5920424	428	155501											
RPS9	6203	broad.mit.edu	37	chr19	54705255	54705255	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccgtcccctaaatttggtaCtattcgtggtttaggaaggt	10	8	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54705255	G	G	54705255	1	3	193	0	1	0	0	0	0	0	0	0	13773	580	20	4		4	RPS9	19	54705255	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1496696	54705255	4423728	429	155502											
LILRA6	79168	broad.mit.edu	37	chr19	54742922	54742922	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaccaagcctgccatgccCatgcggatgagattctccac	10	14	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54742922	A	A	54742922	3	1	193	1	0	0	0	0	1	0	0	0	8861	594	21	2	96	2	LILRA6	19	54742922	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	37667	54742922	4386061	430	155503											
LILRB2	10288	broad.mit.edu	37	chr19	54778428	54778428	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcctcatggtctttgttAggggtccaggctgactgggg	14	9	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54778428	G	G	54778428	1	3	193	0	1	0	0	0	0	0	0	0	8863	435	15	5		5	LILRB2	19	54778428	3'UTR	SNP	A	TCGA-67-3770-01A-01D-0969-08	35506	54778428	4350555	431	155504											
PTPRH	5794	broad.mit.edu	37	chr19	55716908	55716908	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggacctcccaggtcagggcGatggagctgttggtctgagc	17	10	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55716908	T	T	55716908	2	4	193	1	0	0	0	0	0	0	0	1	12911	1048	37	3		3	PTPRH	19	55716908	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	938480	55716908	3412075	432	155505											
NLRP13	126204	broad.mit.edu	37	chr19	56443508	56443508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcagctctcaagtttgccCaggggatacgcgggaagtgc	15	11	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56443508	A	A	56443508	3	1	193	1	0	0	0	0	1	0	0	0	10570	595	21	2	3003	2	NLRP13	19	56443508	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	726600	56443508	2685475	433	155506											
SIGLEC1	6614	broad.mit.edu	37	chr20	3684492	3684492	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatgtggaggctgatgGggggtgagaccaaagagccc	18	6	0	5			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3684492	A	A	3684492	3	1	193	1	0	0	0	0	1	0	0	0	14418	1232	43	4	4248	4	SIGLEC1	20	3684492	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08		3684492	59341028	434	155507											
SSTR4	6754	broad.mit.edu	37	chr20	23016506	23016506	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcagcgtcgacggcctcaAcatgttcaccagcgtcttct	9	15	5	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23016506	T	T	23016506	3	4	193	1	0	0	0	0	1	0	0	0	15318	43	2	5	388	5	SSTR4	20	23016506	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08	19332014	23016506	40009014	435	155508											
C20orf118	140711	broad.mit.edu	37	chr20	35507615	35507615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagctgggcaggggcaCcacccgaggctctgggggca	19	11	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35507615	A	A	35507615	1	1	193	0	1	0	0	0	0	0	0	0	2106	522	18	3		3	C20orf118	20	35507615	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	12491109	35507615	27517905	436	155509											
BLCAP	10904	broad.mit.edu	37	chr20	36159051	36159051	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctagaatctttgtgctctcGctgcagttccctttgggttt	9	11	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36159051	T	T	36159051	1	4	193	0	1	0	0	0	0	0	0	0	1448	1102	38	3		3	BLCAP	20	36159051	5'Flank	SNP	G	TCGA-67-3770-01A-01D-0969-08	651436	36159051	26866469	437	155510											
BPI	671	broad.mit.edu	37	chr20	36964032	36964032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcttccctctcccgacgCcggccagagtccagctctac	9	18	2	1	rs143433981		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36964032	A	A	36964032	3	1	193	1	0	0	0	0	1	0	0	0	1499	739	26	3	1435	3	BPI	20	36964032	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	804981	36964032	26061488	438	155511											
RALGAPB	57148	broad.mit.edu	37	chr20	37126007	37126007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcagacaggaacaggGttccagtcagattcgactat	9	10	3	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37126007	T	T	37126007	3	4	193	1	0	0	0	0	1	0	0	0	13123	1261	44	3	411	3	RALGAPB	20	37126007	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	161975	37126007	25899513	439	155512											
PTPRT	11122	broad.mit.edu	37	chr20	40739175	40739175	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgctgccctcgcataCccagcccagcaacacgtgga	9	18	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40739175	T	T	40739175	1	4	193	0	1	0	0	0	0	0	0	0	12920	522	18	4		4	PTPRT	20	40739175	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	3613168	40739175	22286345	440	155513											
NFATC2	4773	broad.mit.edu	37	chr20	50092041	50092041	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggtatctccaggacttTggtgttgcccactatcttct	9	11	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50092041	C	C	50092041	3	2	193	1	0	0	0	0	1	0	0	0	10457	1821	63	5	1364	5	NFATC2	20	50092041	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	9352866	50092041	12933479	441	155514											
OPRL1	4987	broad.mit.edu	37	chr20	62729409	62729409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgccctcgacgtccgcaCgtccagcaaagcccaggctg	11	18	0	0	rs148381492		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62729409	A	A	62729409	3	1	193	1	0	0	0	0	1	0	0	0	10980	536	19	3	494	3	OPRL1	20	62729409	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	12637368	62729409	296111	442	155515											
TPTE	7179	broad.mit.edu	37	chr21	10910395	10910395	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgttgtaatgttatcaAgtacctatgaatgaacacat	7	6	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10910395	T	T	10910395	3	4	193	1	0	0	0	0	1	0	0	0	16554	72	3	5	306	5	TPTE	21	10910395	Missense_Mutation	SNP	A	TCGA-67-3770-01A-01D-0969-08		10910395	37219500	443	155516											
TIAM1	7074	broad.mit.edu	37	chr21	32559434	32559434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaagacagaatggcaggGctcacaccttctgaatgttt	9	9	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32559434	T	T	32559434	1	4	193	0	1	0	0	0	0	0	0	0	16013	1218	42	3		3	TIAM1	21	32559434	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	21649039	32559434	15570461	444	155517											
UBASH3A	53347	broad.mit.edu	37	chr21	43826503	43826503	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctgtagacccaggggcGtttgggctgaattccctgtg	14	10	1	2	rs150478172	by1000genomes	TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43826503	A	A	43826503	1	1	193	0	1	0	0	0	0	0	0	0	16965	1160	40	4		4	UBASH3A	21	43826503	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	11267069	43826503	4303392	445	155518											
SLC19A1	6573	broad.mit.edu	37	chr21	46935678	46935678	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaagtctcatctgcagccTcagggcctgaggcttgggcg	14	12	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46935678	A	A	46935678	3	1	193	1	0	0	0	0	1	0	0	0	14541	1551	54	5	109	5	SLC19A1	21	46935678	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	3109175	46935678	1194217	446	155519											
MCM3AP	8888	broad.mit.edu	37	chr21	47699995	47699995	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatcctctgtgctcgggcTgacttcaccgtcacctggtt	10	14	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47699995	C	C	47699995	3	2	193	1	0	0	0	0	1	0	0	0	9481	1580	55	5	4463	5	MCM3AP	21	47699995	Missense_Mutation	SNP	T	TCGA-67-3770-01A-01D-0969-08	764317	47699995	429900	447	155520											
GAB4	128954	broad.mit.edu	37	chr22	17472629	17472629	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgaggtgtctgaagaaacaCcaaaaatgcctttagcttca	8	9	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17472629	G	G	17472629	1	3	193	0	1	0	0	0	0	0	0	0	6211	522	18	4		4	GAB4	22	17472629	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08		17472629	33831937	448	155521											
CABIN1	23523	broad.mit.edu	37	chr22	24432038	24432038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttactcctgggggcgaggGgcattttcctgttagattct	13	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24432038	T	T	24432038	1	4	193	0	1	0	0	0	0	0	0	0	2554	1247	43	2		2	CABIN1	22	24432038	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	6959409	24432038	26872528	449	155522											
KREMEN1	83999	broad.mit.edu	37	chr22	29495023	29495023	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcccctgccagaggtcAggtagttaggctggtggatt	17	8	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29495023	G	G	29495023	1	3	193	0	1	0	0	0	0	0	0	0	8513	203	7	5		5	KREMEN1	22	29495023	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	5062985	29495023	21809543	450	155523											
THOC5	8563	broad.mit.edu	37	chr22	29915164	29915164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccatcccttcctccgggCaccatctctctcctgggacc	6	22	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29915164	A	A	29915164	1	1	193	0	1	0	0	0	0	0	0	0	15991	725	25	3		3	THOC5	22	29915164	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	420141	29915164	21389402	451	155524											
BPIL2	254240	broad.mit.edu	37	chr22	32841723	32841723	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaaaaaaaaaaaaaaaaGaggttactcagagaccataa	5	4	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32841723	T	T	32841723	1	4	193	0	1	0	0	0	0	0	0	0	1501	957	33	3		3	BPIL2	22	32841723	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	2926559	32841723	18462843	452	155525											
CDC42EP1	11135	broad.mit.edu	37	chr22	37964344	37964344	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcccccgctgcaaacccCccagcccctactgcaaaccc	5	24	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37964344	T	T	37964344	2	4	193	1	0	0	0	0	0	0	0	1	3105	610	22	4		4	CDC42EP1	22	37964344	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	5122621	37964344	13340222	453	155526											
SCUBE1	80274	broad.mit.edu	37	chr22	43658571	43658571	+	Intron	DEL	C	-	-													tacaacccttgtcccttatgCcctatcaggccccttccaca							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43658571	-	-	43658571	6	5	193	0	1	1	0	1	0	0	0	0	14057	754	26	0		0	SCUBE1	22	43658571	Intron	DEL	C	TCGA-67-3770-01A-01D-0969-08	5694227	43658571	7645995	454	155527											
PARVG	64098	broad.mit.edu	37	chr22	44586474	44586474	+	Frame_Shift_Del	DEL	G	-	-													tctaccctgcacctccttgtGgccctggccaagcgcttcca							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44586474	-	-	44586474	7	5	193	1	0	1	0	1	0	0	0	0	11564	1335	47	0	450	0	PARVG	22	44586474	Frame_Shift_Del	DEL	G	TCGA-67-3770-01A-01D-0969-08	927903	44586474	6718092	455	155528											
ASMT	438	broad.mit.edu	37	chrX	1743385	1743385	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggcagatgctgggagGtggtggctgaccccaggcag	17	12	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1743385	T	T	1743385	1	4	193	0	1	0	0	0	0	0	0	0	1049	1276	44	3		3	ASMT	23	1743385	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08		1743385	153527175	456	155529											
XG	7499	broad.mit.edu	37	chrX	2712567	2712567	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaatgccgcgtgctctGccccacaggttacttcaatg	10	13	2	1	rs56070101		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2712567	A	A	2712567	1	1	193	0	1	0	0	0	0	0	0	0	17554	1334	46	4		4	XG	23	2712567	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	969182	2712567	152557993	457	155530											
NLGN4X	57502	broad.mit.edu	37	chrX	5811180	5811180	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctctggggactggggCgcctgtgagtctcatggcgc	16	10	2	1	rs4017999		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5811180	G	G	5811180	3	3	193	1	0	0	0	0	1	0	0	0	10559	768	27	4	325	4	NLGN4X	23	5811180	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	3098613	5811180	149459380	458	155531											
FRMPD4	9758	broad.mit.edu	37	chrX	12693116	12693116	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaccataatgatgaataAcagcagagaaaaataacatg	6	5	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12693116	G	G	12693116	1	3	193	0	1	0	0	0	0	0	0	0	6119	58	2	5		5	FRMPD4	23	12693116	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	6881936	12693116	142577444	459	155532											
MOSPD2	158747	broad.mit.edu	37	chrX	14915127	14915127	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattgtaaatgaaaaatgTcaagggaaaggcaatatata	9	2	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14915127	C	C	14915127	1	2	193	0	1	0	0	0	0	0	0	0	9810	1682	58	5		5	MOSPD2	23	14915127	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	2222011	14915127	140355433	460	155533											
TMEM27	57393	broad.mit.edu	37	chrX	15662940	15662940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cattttaataaataattcatGtatgaaacagataaaactct	3	5	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15662940	A	A	15662940	1	1	193	0	1	0	0	0	0	0	0	0	16275	1392	48	4		4	TMEM27	23	15662940	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	747813	15662940	139607620	461	155534											
GPR64	10149	broad.mit.edu	37	chrX	19028759	19028759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggggccagcatgtcagGcggggaatgaaggagtctgc	18	8	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19028759	T	T	19028759	3	4	193	1	0	0	0	0	1	0	0	0	6770	1203	42	3	1868	3	GPR64	23	19028759	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	3365819	19028759	136241801	462	155535											
KLHL34	257240	broad.mit.edu	37	chrX	21674559	21674559	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agccgccgtccagcggtcccGacgcaggtcgtacatctcca	11	17	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21674559	A	A	21674559	3	1	193	1	0	0	0	0	1	0	0	0	8458	1057	37	4	590	4	KLHL34	23	21674559	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	2645800	21674559	133596001	463	155536											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997129	27997129	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagagattgtatacagtccCactttcttattcttctctct	4	10	4	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27997129	T	T	27997129	1	4	193	0	1	0	0	0	0	0	0	0	4310	609	21	4		4	DCAF8L1	23	27997129	3'UTR	SNP	C	TCGA-67-3770-01A-01D-0969-08	6322570	27997129	127273431	464	155537											
MAGEB3	4114	broad.mit.edu	37	chrX	30254445	30254445	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaagcccattatgaaagCagatatgctaaaaattgtcc	7	7	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30254445	A	A	30254445	3	1	193	1	0	0	0	0	1	0	0	0	9269	710	25	3	406	3	MAGEB3	23	30254445	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	2257316	30254445	125016115	465	155538											
NR0B1	190	broad.mit.edu	37	chrX	30327006	30327006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcgggcgctgccggagCcacgtgcgtttgctttgagc	15	13	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30327006	A	A	30327006	3	1	193	1	0	0	0	0	1	0	0	0	10708	739	26	3	945	3	NR0B1	23	30327006	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	72561	30327006	124943554	466	155539											
GK	2710	broad.mit.edu	37	chrX	30695455	30695456	+	Intron	INS	-	TT	TT													gtagtttcctacttgttaaaINStttttgacttccttctgttt							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	30695456	TT	TT	30695455	6	5	193	0	1	1	1	0	0	0	0	0	6484	116	4	0		0	GK	23	30695455	Intron	INS	-	TCGA-67-3770-01A-01D-0969-08	368449	30695455	124575105	467	155540											
RPGR	6103	broad.mit.edu	37	chrX	38145111	38145111	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttctccttccccctccttTtccctttcttctccttcctc	0	21	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38145111	C	C	38145111	2	2	193	1	0	0	0	0	0	0	0	1	13659	1838	64	5		5	RPGR	23	38145111	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	7449656	38145111	117125449	468	155541											
RBM10	8241	broad.mit.edu	37	chrX	47041662	47041663	+	Frame_Shift_Ins	INS	-	G	G													ccgacggacataaggagacaINSggggcaccctcgaaggaggg							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47041663	G	G	47041662	7	5	193	1	0	1	1	0	0	0	0	0	13219	175	7	0	1949	0	RBM10	23	47041662	Frame_Shift_Ins	INS	-	TCGA-67-3770-01A-01D-0969-08	8896551	47041662	108228898	469	155542											
USP11	8237	broad.mit.edu	37	chrX	47107098	47107098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgagaatcagatcgaGgtgtgacttccatcctacct	9	10	2	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47107098	T	T	47107098	3	4	193	1	0	0	0	0	1	0	0	0	17168	1014	35	2	2832	2	USP11	23	47107098	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	65436	47107098	108163462	470	155543											
SYN1	6853	broad.mit.edu	37	chrX	47432471	47432471	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggagagaaacacaacGttaccccaggcccagcccca	11	14	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47432471	A	A	47432471	1	1	193	0	1	0	0	0	0	0	0	0	15559	1160	40	4		4	SYN1	23	47432471	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	325373	47432471	107838089	471	155544											
PRICKLE3	4007	broad.mit.edu	37	chrX	49032419	49032419	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagggtccggcgcgggcctCcttcagacaccagagggtcg	15	14	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49032419	A	A	49032419	3	1	193	1	0	0	0	0	1	0	0	0	12594	855	30	3	400	3	PRICKLE3	23	49032419	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	1599948	49032419	106238141	472	155545											
MAGED2	10916	broad.mit.edu	37	chrX	54841728	54841728	+	Frame_Shift_Del	DEL	G	-	-													gcagctcagtaccgagaggcGatggaagcggatttgaaggc							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54841728	-	-	54841728	7	5	193	1	0	1	0	1	0	0	0	0	9276	1045	37	0	1476	0	MAGED2	23	54841728	Frame_Shift_Del	DEL	G	TCGA-67-3770-01A-01D-0969-08	5809309	54841728	100428832	473	155546											
MTMR8	55613	broad.mit.edu	37	chrX	63574871	63574871	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatgaaacctaaaaatcatCaaacaatgcaaataaaggct	5	7	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63574871	A	A	63574871	1	1	193	0	1	0	0	0	0	0	0	0	10043	841	29	3		3	MTMR8	23	63574871	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	8733143	63574871	91695689	474	155547											
HEPH	9843	broad.mit.edu	37	chrX	65420411	65420411	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttctgttctctaacctgCccaggctggacatgtgcaag	11	11	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65420411	T	T	65420411	3	4	193	1	0	0	0	0	1	0	0	0	7121	739	26	4	2102	4	HEPH	23	65420411	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	1845540	65420411	89850149	475	155548											
STARD8	9754	broad.mit.edu	37	chrX	67943666	67943666	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatggcaccccatccctgcCgcgactttgtggtgcttcgg	12	15	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67943666	T	T	67943666	3	4	193	1	0	0	0	0	1	0	0	0	15381	652	23	4	3048	4	STARD8	23	67943666	Missense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	2523255	67943666	87326894	476	155549											
OTUD6A	139562	broad.mit.edu	37	chrX	69282756	69282756	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tggccggcttcaagcgcgagGaggaggagaagctcgccgcc	17	12	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69282756	C	C	69282756	3	2	193	1	0	0	0	0	1	0	0	0	11410	1175	41	4	384	4	OTUD6A	23	69282756	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	1339090	69282756	85987804	477	155550											
GDPD2	54857	broad.mit.edu	37	chrX	69645582	69645582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actattgacaccccttccccCacttggacacctccctctcc	3	21	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69645582	T	T	69645582	1	4	193	0	1	0	0	0	0	0	0	0	6388	609	21	4		4	GDPD2	23	69645582	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	362826	69645582	85624978	478	155551											
DLG3	1741	broad.mit.edu	37	chrX	69718462	69718462	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttcgtgctggtctcctGgtcgtggggctcaatacagt	13	10	3	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69718462	T	T	69718462	1	4	193	0	1	0	0	0	0	0	0	0	4596	1363	47	2		2	DLG3	23	69718462	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	72880	69718462	85552098	479	155552											
POF1B	79983	broad.mit.edu	37	chrX	84606465	84606465	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagacagtggttcctaaaatGatagtaaattatatgttttg	9	3	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84606465	A	A	84606465	1	1	193	0	1	0	0	0	0	0	0	0	12277	1305	45	4		4	POF1B	23	84606465	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	14888003	84606465	70664095	480	155553											
PCDH19	57526	broad.mit.edu	37	chrX	99551355	99551355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatggggctgacctcatGcatgactttctcgctatcag	10	11	3	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99551355	T	T	99551355	3	4	193	1	0	0	0	0	1	0	0	0	11608	1319	46	3	83	3	PCDH19	23	99551355	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	14944890	99551355	55719205	481	155554											
SRPX2	27286	broad.mit.edu	37	chrX	99912016	99912016	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgcaacctctgcctcCtgggttcaagcgattctcct	7	16	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99912016	T	T	99912016	1	4	193	0	1	0	0	0	0	0	0	0	15283	696	24	4		4	SRPX2	23	99912016	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	360661	99912016	55358544	482	155555											
BTK	695	broad.mit.edu	37	chrX	100613339	100613339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttaatgagctcagggatgGtgctgaaaaggtgcttctca	13	6	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100613339	A	A	100613339	3	1	193	1	0	0	0	0	1	0	0	0	1567	1261	44	4	950	4	BTK	23	100613339	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	701323	100613339	54657221	483	155556											
NXF5	55998	broad.mit.edu	37	chrX	101096791	101096791	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaacagcgtcagaggccaAtggcccctgctgagccaggt	13	13	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101096791	G	G	101096791	1	3	193	0	1	0	0	0	0	0	0	0	10881	116	4	5		5	NXF5	23	101096791	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	483452	101096791	54173769	484	155557											
NXF2B	728343	broad.mit.edu	37	chrX	101572217	101572217	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattagagaactgacgaatgCtggaagtggaatagtggctg	14	5	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101572217	T	T	101572217	1	4	193	0	1	0	0	0	0	0	0	0	10879	812	28	4		4	NXF2B	23	101572217	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	475426	101572217	53698343	485	155558											
IL1RAPL2	26280	broad.mit.edu	37	chrX	105011313	105011313	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccatgttctggactccgcaGaacaaggactttttggagaa	11	9	1	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105011313	A	A	105011313	3	1	193	1	0	0	0	0	1	0	0	0	7732	943	33	4	1758	4	IL1RAPL2	23	105011313	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	3439096	105011313	50259247	486	155559											
NRK	203447	broad.mit.edu	37	chrX	105132286	105132286	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctattcttattccataGgatgaggaagaggatctcag	10	7	3	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105132286	T	T	105132286	5	4	193	1	0	0	0	0	0	0	1	0	10750	1014	35	2	270	2	NRK	23	105132286	Splice_Site	SNP	G	TCGA-67-3770-01A-01D-0969-08	120973	105132286	50138274	487	155560											
NRK	203447	broad.mit.edu	37	chrX	105189911	105189911	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggagactacatgtcctaTcaagcctatatacgaatact	7	9	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105189911	C	C	105189911	2	2	193	1	0	0	0	0	0	0	0	1	10750	1442	50	5		5	NRK	23	105189911	Silent	SNP	T	TCGA-67-3770-01A-01D-0969-08	57625	105189911	50080649	488	155561											
CAPN6	827	broad.mit.edu	37	chrX	110496262	110496262	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagctttttccagcagagcAttccaaaactcattcatgga	6	10	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110496262	G	G	110496262	2	3	193	1	0	0	0	0	0	0	0	1	2656	214	8	5		5	CAPN6	23	110496262	Silent	SNP	A	TCGA-67-3770-01A-01D-0969-08	5306351	110496262	44774298	489	155562											
CXorf61	203413	broad.mit.edu	37	chrX	115593061	115593061	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattatttaaaatatcccgAgagaggtcgtagactgcaag	9	6	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115593061	G	G	115593061	2	3	193	1	0	0	0	0	0	0	0	1	4149	291	11	5		5	CXorf61	23	115593061	Silent	SNP	A	TCGA-67-3770-01A-01D-0969-08	5096799	115593061	39677499	490	155563											
SEPT6	23157	broad.mit.edu	37	chrX	118763133	118763133	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgccacagggatgctgGgaccagttataggtacctca	13	9	1	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118763133	C	C	118763133	1	2	193	0	1	0	0	0	0	0	0	0	14181	1247	43	4		4	SEPT6	23	118763133	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	3170072	118763133	36507427	491	155564											
THOC2	57187	broad.mit.edu	37	chrX	122747707	122747707	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaatggcatgaaagacaaGcagagctgacagagattact	10	6	0	5			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122747707	T	T	122747707	1	4	193	0	1	0	0	0	0	0	0	0	15988	986	34	3		3	THOC2	23	122747707	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	3984574	122747707	32522853	492	155565											
UTP14A	10813	broad.mit.edu	37	chrX	129044833	129044833	+	Intron	DEL	G	-	-													aagagtgatagtgttggcatGgctagaaataggcaattgaa							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129044833	-	-	129044833	6	5	193	0	1	1	0	1	0	0	0	0	17222	1363	47	0		0	UTP14A	23	129044833	Intron	DEL	G	TCGA-67-3770-01A-01D-0969-08	6297126	129044833	26225727	493	155566											
AIFM1	9131	broad.mit.edu	37	chrX	129264072	129264072	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggagcctgtggaactgccGgggtgctgggaggaatagta	19	7	0	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129264072	A	A	129264072	3	1	193	1	0	0	0	0	1	0	0	0	426	1116	39	4	206	4	AIFM1	23	129264072	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	219239	129264072	26006488	494	155567											
SLC25A14	9016	broad.mit.edu	37	chrX	129484598	129484598	+	Intron	DEL	C	-	-													cctaatacaagcagacctttCtttttcttttccttttcaca							TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129484598	-	-	129484598	6	5	193	0	1	1	0	1	0	0	0	0	14590	928	32	0		0	SLC25A14	23	129484598	Intron	DEL	C	TCGA-67-3770-01A-01D-0969-08	220526	129484598	25785962	495	155568											
IGSF1	3547	broad.mit.edu	37	chrX	130416319	130416319	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtgttttgctcaTagctctcagaggatatgagg	14	5	2	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130416319	C	C	130416319	1	2	193	0	1	0	0	0	0	0	0	0	7666	1421	49	5		5	IGSF1	23	130416319	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	931721	130416319	24854241	496	155569											
MST4	51765	broad.mit.edu	37	chrX	131205316	131205316	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatcttttagctatgctccAgtgtgcttgttctagcataa	7	8	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131205316	G	G	131205316	1	3	193	0	1	0	0	0	0	0	0	0	9986	203	7	5		5	MST4	23	131205316	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	788997	131205316	24065244	497	155570											
PHF6	84295	broad.mit.edu	37	chrX	133559478	133559478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattatgtttagttaagagCatgttactaaaatgctgagg	9	4	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133559478	A	A	133559478	1	1	193	0	1	0	0	0	0	0	0	0	11933	725	25	3		3	PHF6	23	133559478	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	2354162	133559478	21711082	498	155571											
SAGE1	55511	broad.mit.edu	37	chrX	134994943	134994943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctggtgaatggaatacCtctttaatttcaggtttaaa	7	7	3	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134994943	A	A	134994943	1	1	193	0	1	0	0	0	0	0	0	0	13920	696	24	2		2	SAGE1	23	134994943	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	1435465	134994943	20275617	499	155572											
MAP7D3	79649	broad.mit.edu	37	chrX	135318499	135318499	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctccttgtctgttttccCtagagagcaagtacaaaagg	8	10	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135318499	A	A	135318499	5	1	193	1	0	0	0	0	0	0	1	0	9361	695	24	2	2038	2	MAP7D3	23	135318499	Splice_Site	SNP	C	TCGA-67-3770-01A-01D-0969-08	323556	135318499	19952061	500	155573											
GPR112	139378	broad.mit.edu	37	chrX	135475654	135475654	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttactatatggtaaatatCacaaggcaagatgtttacct	7	6	1	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135475654	A	A	135475654	1	1	193	0	1	0	0	0	0	0	0	0	6694	841	29	3		3	GPR112	23	135475654	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	157155	135475654	19794906	501	155574											
IDS	3423	broad.mit.edu	37	chrX	148564704	148564704	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgcaagtccagccagcGtgggaaaaagagacacaagt	12	10	0	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148564704	A	A	148564704	3	1	193	1	0	0	0	0	1	0	0	0	7573	1145	40	4	430	4	IDS	23	148564704	Missense_Mutation	SNP	G	TCGA-67-3770-01A-01D-0969-08	13089050	148564704	6705856	502	155575											
CXorf40B	541578	broad.mit.edu	37	chrX	149101918	149101918	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagtcatcccgagtctctCcaccagcagctcccgacagg	10	16	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149101918	A	A	149101918	4	1	193	1	0	0	0	0	0	1	0	0	4142	864	30	3	309	3	CXorf40B	23	149101918	Nonsense_Mutation	SNP	C	TCGA-67-3770-01A-01D-0969-08	537214	149101918	6168642	503	155576											
CD99L2	83692	broad.mit.edu	37	chrX	149938920	149938920	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgactgagaactcctgaccAagtcctctgcagctaaaaaa	8	11	1	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149938920	T	T	149938920	1	4	193	0	1	0	0	0	0	0	0	0	3081	145	5	5		5	CD99L2	23	149938920	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	837002	149938920	5331640	504	155577											
GPR50	9248	broad.mit.edu	37	chrX	150345446	150345446	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccctagggcgttagttttTgagctccccgaatagagaat	10	10	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150345446	G	G	150345446	1	3	193	0	1	0	0	0	0	0	0	0	6762	1827	63	5		5	GPR50	23	150345446	Intron	SNP	T	TCGA-67-3770-01A-01D-0969-08	406526	150345446	4925114	505	155578											
MAGEA12	4111	broad.mit.edu	37	chrX	151899874	151899874	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcactcttccccctctctAaaagcccattcatgcagggg	6	16	4	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151899874	G	G	151899874	2	3	193	1	0	0	0	0	0	0	0	1	9254	359	13	5		5	MAGEA12	23	151899874	Silent	SNP	A	TCGA-67-3770-01A-01D-0969-08	1554428	151899874	3370686	506	155579											
CSAG1	158511	broad.mit.edu	37	chrX	151904572	151904572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttacatttttacactgttGtgttccccatgaatgaatat	6	7	0	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151904572	A	A	151904572	1	1	193	0	1	0	0	0	0	0	0	0	3958	1392	48	4		4	CSAG1	23	151904572	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	4698	151904572	3365988	507	155580											
NSDHL	50814	broad.mit.edu	37	chrX	152027212	152027212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattgattatagaattataAgacaaggaacctacaagcca	6	6	0	3			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152027212	G	G	152027212	1	3	193	0	1	0	0	0	0	0	0	0	10765	87	3	5		5	NSDHL	23	152027212	Intron	SNP	A	TCGA-67-3770-01A-01D-0969-08	122640	152027212	3243348	508	155581											
AVPR2	554	broad.mit.edu	37	chrX	153171455	153171455	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgctagtggcttgggcCttctcgctccttctcagcct	11	15	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153171455	A	A	153171455	2	1	193	1	0	0	0	0	0	0	0	1	1238	668	24	2		2	AVPR2	23	153171455	Silent	SNP	C	TCGA-67-3770-01A-01D-0969-08	1144243	153171455	2099105	509	155582											
TKTL1	8277	broad.mit.edu	37	chrX	153555597	153555597	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggttctcagagttcaggCacacaagatcttagcactca	10	10	4	2			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153555597	T	T	153555597	1	4	193	0	1	0	0	0	0	0	0	0	16058	725	25	4		4	TKTL1	23	153555597	Intron	SNP	C	TCGA-67-3770-01A-01D-0969-08	384142	153555597	1714963	510	155583											
PLXNA3	55558	broad.mit.edu	37	chrX	153691506	153691506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctagctcttcccctcccctGcatcccctgaccttgggcaa	6	19	2	1			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153691506	T	T	153691506	1	4	193	0	1	0	0	0	0	0	0	0	12216	1334	46	3		3	PLXNA3	23	153691506	Intron	SNP	G	TCGA-67-3770-01A-01D-0969-08	135909	153691506	1579054	511	155584											
F8	2157	broad.mit.edu	37	chrX	154158393	154158393	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcaaaactacattctcttgGattaatgtttccttcttttc	5	9	2	0			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154158393	T	T	154158393	2	4	193	1	0	0	0	0	0	0	0	1	5393	1164	41	3		3	F8	23	154158393	Silent	SNP	G	TCGA-67-3770-01A-01D-0969-08	466887	154158393	1112167	512	155585											
MIB2	142678	broad.mit.edu	37	chr1	1565853	1565853	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccccctgcggctccgcgctCagcgcctgccccatctgccg	11	22	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	1565853	G	G	1565853	2	3	194	1	0	0	0	0	0	0	0	1	9660	813	29	4		4	MIB2	1	1565853	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01		1565853	247684768	1	155586											
PANK4	55229	broad.mit.edu	37	chr1	2451331	2451331	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgccgtagacgtcccgCaccagcatgtccacattgct	10	17	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	2451331	T	T	2451331	2	4	194	1	0	0	0	0	0	0	0	1	11513	697	25	4		4	PANK4	1	2451331	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	885478	2451331	246799290	2	155587											
MMEL1	79258	broad.mit.edu	37	chr1	2535350	2535350	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaactggctttgcagctcCtccagtcccatccggtggta	9	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	2535350	T	T	2535350	2	4	194	1	0	0	0	0	0	0	0	1	9739	680	24	4		4	MMEL1	1	2535350	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	84019	2535350	246715271	3	155588											
PRDM16	63976	broad.mit.edu	37	chr1	3328985	3328985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actccctttaccccttcacgGaccgagccctcgcccacaac	5	21	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3328985	T	T	3328985	3	4	194	1	0	0	0	0	1	0	0	0	12563	1174	41	3	2258	3	PRDM16	1	3328985	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	793635	3328985	245921636	4	155589											
TP73	7161	broad.mit.edu	37	chr1	3649416	3649416	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccgcgcagcagctgctcCgctctagcaacgcggccacc	11	19	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3649416	T	T	3649416	3	4	194	1	0	0	0	0	1	0	0	0	16517	652	23	4	1777	4	TP73	1	3649416	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	320431	3649416	245601205	5	155590											
CHD5	26038	broad.mit.edu	37	chr1	6212447	6212447	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgcatgcaaatgcacacaCacgcgcacacacgcacacac	6	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6212447	T	T	6212447	1	4	194	0	1	0	0	0	0	0	0	0	3359	493	17	4		4	CHD5	1	6212447	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2563031	6212447	243038174	6	155591											
ACOT7	11332	broad.mit.edu	37	chr1	6453348	6453348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggcggacggcgtctcgaCgtctgggcccgacatgctgg	17	12	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	6453348	A	A	6453348	3	1	194	1	0	0	0	0	1	0	0	0	155	536	19	3	1324	3	ACOT7	1	6453348	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	240901	6453348	242797273	7	155592											
TNFRSF25	8718	broad.mit.edu	37	chr1	6521752	6521752	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcacgtcgtagagctgcggGcccggctgcagcatcatggc	14	13	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	6521752	C	C	6521752	2	2	194	1	0	0	0	0	0	0	0	1	16419	1190	42	4		4	TNFRSF25	1	6521752	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	68404	6521752	242728869	8	155593											
CAMTA1	23261	broad.mit.edu	37	chr1	7805972	7805972	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctgttggctctcccgtcAgtgaaatcgctttcgagaaa	10	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	7805972	G	G	7805972	3	3	194	1	0	0	0	0	1	0	0	0	2639	188	7	5	4508	5	CAMTA1	1	7805972	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	1284220	7805972	241444649	9	155594											
RERE	473	broad.mit.edu	37	chr1	8425882	8425882	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctactcacagaattcactGgacgggggtctggagggtgt	14	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	8425882	A	A	8425882	2	1	194	1	0	0	0	0	0	0	0	1	13339	1335	47	4		4	RERE	1	8425882	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	619910	8425882	240824739	10	155595											
CA6	765	broad.mit.edu	37	chr1	9011799	9011799	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgtggtccggaagcctgttCctttggggttctcacctcac	11	13	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	9011799	G	G	9011799	1	3	194	0	1	0	0	0	0	0	0	0	2547	870	30	4		4	CA6	1	9011799	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	585917	9011799	240238822	11	155596											
SPSB1	80176	broad.mit.edu	37	chr1	9416304	9416304	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacgccgtggtgggggtggcGacggcagacgcccccctgca	17	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	9416304	C	C	9416304	2	2	194	1	0	0	0	0	0	0	0	1	15230	1045	37	4		4	SPSB1	1	9416304	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	404505	9416304	239834317	12	155597											
KIF1B	23095	broad.mit.edu	37	chr1	10436463	10436463	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgtgtcacagggtcccGgagtagacggcttagaggac	16	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	10436463	C	C	10436463	1	2	194	0	1	0	0	0	0	0	0	0	8354	1131	39	4		4	KIF1B	1	10436463	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1020159	10436463	238814158	13	155598											
CASZ1	54897	broad.mit.edu	37	chr1	10702815	10702815	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acgccagcctgtcctcctcgGaggccgcgtgccccggacct	12	19	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	10702815	C	C	10702815	1	2	194	0	1	0	0	0	0	0	0	0	2711	1189	41	4		4	CASZ1	1	10702815	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	266352	10702815	238547806	14	155599											
MASP2	10747	broad.mit.edu	37	chr1	11087442	11087442	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcatcatgagtataaccttCatgtataaaaacagcttcag	6	8	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11087442	T	T	11087442	3	4	194	1	0	0	0	0	1	0	0	0	9415	835	29	4	503	4	MASP2	1	11087442	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	384627	11087442	238163179	15	155600											
MTOR	2475	broad.mit.edu	37	chr1	11297963	11297963	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgctactgagtcggccCacagtgcagatggccagctc	11	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	11297963	A	A	11297963	2	1	194	1	0	0	0	0	0	0	0	1	10048	581	21	2		2	MTOR	1	11297963	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	210521	11297963	237952658	16	155601											
VPS13D	55187	broad.mit.edu	37	chr1	12374318	12374318	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgacgaatgtgttcagctGtatctttcagcccgctaaga	9	10	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	12374318	A	A	12374318	3	1	194	1	0	0	0	0	1	0	0	0	17319	1377	48	4	7196	4	VPS13D	1	12374318	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1076355	12374318	236876303	17	155602											
CELA2B	51032	broad.mit.edu	37	chr1	15802845	15802845	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attttatgacctcttgggatCcttctagaacaagggttttc	8	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	15802845	A	A	15802845	1	1	194	0	1	0	0	0	0	0	0	0	3242	870	30	3		3	CELA2B	1	15802845	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3428527	15802845	233447776	18	155603											
TMEM82	388595	broad.mit.edu	37	chr1	16069291	16069291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcctgccctcctaacaccCctgcacgctgcctcgctgcc	7	21	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	16069291	A	A	16069291	1	1	194	0	1	0	0	0	0	0	0	0	16329	638	22	2		2	TMEM82	1	16069291	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	266446	16069291	233181330	19	155604											
CLCNKA	1187	broad.mit.edu	37	chr1	16359840	16359840	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggggggacaccagcatgctCccatccaaacctggggggat	14	12	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	16359840	T	T	16359840	1	4	194	0	1	0	0	0	0	0	0	0	3500	870	30	4		4	CLCNKA	1	16359840	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	290549	16359840	232890781	20	155605											
PADI2	11240	broad.mit.edu	37	chr1	17431488	17431488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcagcctccccatcaCgcaccacctccacccacacg	3	25	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17431488	A	A	17431488	3	1	194	1	0	0	0	0	1	0	0	0	11472	536	19	3	1896	3	PADI2	1	17431488	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1071648	17431488	231819133	21	155606											
PADI3	51702	broad.mit.edu	37	chr1	17592143	17592143	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagtgacttaccctctgccTcctcttgcagacatctctct	6	15	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	17592143	G	G	17592143	1	3	194	0	1	0	0	0	0	0	0	0	11473	1566	54	5		5	PADI3	1	17592143	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	160655	17592143	231658478	22	155607											
TAS1R2	80834	broad.mit.edu	37	chr1	19185867	19185867	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcaatgaatggggaggagTgctttaagcccttggtcctg	15	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	19185867	A	A	19185867	1	1	194	0	1	0	0	0	0	0	0	0	15682	1711	59	5		5	TAS1R2	1	19185867	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1593724	19185867	230064754	23	155608											
UBR4	23352	broad.mit.edu	37	chr1	19404343	19404343	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttggggttgtttgtttcTaggaaaaaagcgcccccagg	13	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	19404343	C	C	19404343	1	2	194	0	1	0	0	0	0	0	0	0	17030	1537	53	5		5	UBR4	1	19404343	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	218476	19404343	229846278	24	155609											
UBR4	23352	broad.mit.edu	37	chr1	19413477	19413477	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtaaggccagcccctcagtCtgttggtgaagcacttggct	13	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	19413477	T	T	19413477	1	4	194	0	1	0	0	0	0	0	0	0	17030	928	32	4		4	UBR4	1	19413477	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	9134	19413477	229837144	25	155610											
UBR4	23352	broad.mit.edu	37	chr1	19491400	19491400	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcgatgtagtcatgcgggtGagccaggcctgcaggcgcac	17	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	19491400	C	C	19491400	2	2	194	1	0	0	0	0	0	0	0	1	17030	1277	45	4		4	UBR4	1	19491400	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	77923	19491400	229759221	26	155611											
FAM43B	163933	broad.mit.edu	37	chr1	20879649	20879649	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgttccgcagccggcgccaGaaagtggagctcaacaagga	14	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20879649	A	A	20879649	2	1	194	1	0	0	0	0	0	0	0	1	5614	933	33	4		4	FAM43B	1	20879649	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	1388249	20879649	228370972	27	155612											
HSPG2	3339	broad.mit.edu	37	chr1	22180713	22180713	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagctggggccagaatgggTgccgtggagcacagacacag	17	9	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	22180713	A	A	22180713	3	1	194	1	0	0	0	0	1	0	0	0	7500	1696	59	5	6955	5	HSPG2	1	22180713	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1301064	22180713	227069908	28	155613											
HSPG2	3339	broad.mit.edu	37	chr1	22211041	22211041	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgaagtcatcgggttggTcaaagcgcagcctgatctgg	13	10	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	22211041	C	C	22211041	3	2	194	1	0	0	0	0	1	0	0	0	7500	1667	58	5	11881	5	HSPG2	1	22211041	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	30328	22211041	227039580	29	155614											
IL22RA1	58985	broad.mit.edu	37	chr1	24469444	24469444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgaaactggctatgctcGggctggggagggtgctgggg	19	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	24469444	T	T	24469444	1	4	194	0	1	0	0	0	0	0	0	0	7743	1131	39	1		1	IL22RA1	1	24469444	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2258403	24469444	224781177	30	155615											
ARID1A	8289	broad.mit.edu	37	chr1	27097629	27097629	+	Frame_Shift_Del	DEL	G	-	-													ggtcaacaagaacaaaaaatGgcgggaacttgcaaccaacc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	27097629	-	-	27097629	7	5	194	1	0	1	0	1	0	0	0	0	915	1357	47	0	3264	0	ARID1A	1	27097629	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	2628185	27097629	222152992	31	155616											
GPR3	2827	broad.mit.edu	37	chr1	27720714	27720714	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtcgaccgctacctttctCtgtacaatgccctcacctac	5	17	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	27720714	T	T	27720714	2	4	194	1	0	0	0	0	0	0	0	1	6751	912	32	4		4	GPR3	1	27720714	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	623085	27720714	221529907	32	155617											
PTPRU	10076	broad.mit.edu	37	chr1	29609316	29609316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctggtgcactacttcgGggccgaactggcggccagca	15	13	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	29609316	T	T	29609316	3	4	194	1	0	0	0	0	1	0	0	0	12921	1232	43	2	2043	2	PTPRU	1	29609316	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1888602	29609316	219641305	33	155618											
PUM1	9698	broad.mit.edu	37	chr1	31425212	31425212	+	Splice_Site	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtttcagctgaatgaatcTgaagtacaaagtaaaaaggg	10	5	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	31425212	G	G	31425212	5	3	194	1	0	0	0	0	0	0	1	0	12933	1594	55	5	1004	5	PUM1	1	31425212	Splice_Site	SNP	T	TCGA-67-3771-01A-01D-1040-01	1815896	31425212	217825409	34	155619											
NKAIN1	79570	broad.mit.edu	37	chr1	31655571	31655571	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaaccgtaacaacttccAattaaatgttttcaccttaa	4	10	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	31655571	G	G	31655571	1	3	194	0	1	0	0	0	0	0	0	0	10530	145	5	5		5	NKAIN1	1	31655571	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	230359	31655571	217595050	35	155620											
SNRNP40	9410	broad.mit.edu	37	chr1	31732846	31732846	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagggtgctagcctggacatCcaacatttggcatcacttat	10	10	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31732846	A	A	31732846	1	1	194	0	1	0	0	0	0	0	0	0	14970	870	30	3		3	SNRNP40	1	31732846	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	77275	31732846	217517775	36	155621											
TMEM39B	55116	broad.mit.edu	37	chr1	32568362	32568362	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtagaagtggtggtggggggGacaaaagacaaaaaaatcca	15	4	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	32568362	A	A	32568362	1	1	194	0	1	0	0	0	0	0	0	0	16285	1189	41	4		4	TMEM39B	1	32568362	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	835516	32568362	216682259	37	155622											
C1orf91	56063	broad.mit.edu	37	chr1	32682977	32682977	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcagaatgaaaagaatGcctgagatgcaacaaatgcc	11	7	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	32682977	A	A	32682977	1	1	194	0	1	0	0	0	0	0	0	0	2090	1334	46	4		4	C1orf91	1	32682977	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	114615	32682977	216567644	38	155623											
S100PBP	64766	broad.mit.edu	37	chr1	33292344	33292344	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggccccagctctcttcttCaaacaataactttcaacaga	5	13	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	33292344	G	G	33292344	4	3	194	1	0	0	0	0	0	1	0	0	13902	838	29	4	646	4	S100PBP	1	33292344	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	609367	33292344	215958277	39	155624											
CSMD2	114784	broad.mit.edu	37	chr1	34052087	34052087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaggccccatacagatgCggctccatgcaattaccttc	7	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	34052087	A	A	34052087	1	1	194	0	1	0	0	0	0	0	0	0	3979	783	27	3		3	CSMD2	1	34052087	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	759743	34052087	215198534	40	155625											
GRIK3	2899	broad.mit.edu	37	chr1	37319301	37319301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttgttgaaaacaattcgtCcagttaatccttcccattga	5	9	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	37319301	A	A	37319301	3	1	194	1	0	0	0	0	1	0	0	0	6841	855	30	3	1668	3	GRIK3	1	37319301	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3267214	37319301	211931320	41	155626											
EPHA10	284656	broad.mit.edu	37	chr1	38188721	38188721	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcccagcttgcctcctccaAggctcctctccagcgtgacg	9	19	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	38188721	G	G	38188721	3	3	194	1	0	0	0	0	1	0	0	0	5208	72	3	5	1106	5	EPHA10	1	38188721	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	869420	38188721	211061900	42	155627											
MACF1	23499	broad.mit.edu	37	chr1	39752943	39752943	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaatcctttccttttttctCttcttccatttcagggtcat	3	11	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39752943	A	A	39752943	1	1	194	0	1	0	0	0	0	0	0	0	9232	928	32	3		3	MACF1	1	39752943	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1564222	39752943	209497678	43	155628											
COL9A2	1298	broad.mit.edu	37	chr1	40777384	40777384	+	Frame_Shift_Del	DEL	C	-	-													tggtccatctggtccagggtCcccctggaagcaaaagaagc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	40777384	-	-	40777384	7	5	194	1	0	1	0	1	0	0	0	0	3740	855	30	0	1744	0	COL9A2	1	40777384	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	1024441	40777384	208473237	44	155629											
KIAA0467	23334	broad.mit.edu	37	chr1	43855628	43855628	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggcccgggccggcgcggGagggctgtgtgatggcctcg	20	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	43855628	T	T	43855628	1	4	194	0	1	0	0	0	0	0	0	0	8248	1189	41	3		3	KIAA0467	1	43855628	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	3078244	43855628	205394993	45	155630											
ST3GAL3	6487	broad.mit.edu	37	chr1	44386406	44386406	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtctcagctgtcccagccctCcagctgaactctgcatgcct	8	17	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	44386406	G	G	44386406	1	3	194	0	1	0	0	0	0	0	0	0	15334	870	30	4		4	ST3GAL3	1	44386406	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	530778	44386406	204864215	46	155631											
KIF2C	11004	broad.mit.edu	37	chr1	45205402	45205402	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccaagcgtaggaagatGgttgggaactgcgtctcccc	15	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	45205402	A	A	45205402	1	1	194	0	1	0	0	0	0	0	0	0	8369	1363	47	4		4	KIF2C	1	45205402	5'Flank	SNP	G	TCGA-67-3771-01A-01D-1040-01	818996	45205402	204045219	47	155632											
POMGNT1	55624	broad.mit.edu	37	chr1	46668970	46668970	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgagtgttacggcgccctCctcccgcccccgcgccgcgc	11	21	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46668970	T	T	46668970	1	4	194	0	1	0	0	0	0	0	0	0	12338	870	30	4		4	POMGNT1	1	46668970	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1463568	46668970	202581651	48	155633											
CYP4X1	260293	broad.mit.edu	37	chr1	47505153	47505153	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaccctgagcatcaagagaGatgccgggaggaggtcaggg	17	8	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	47505153	A	A	47505153	3	1	194	1	0	0	0	0	1	0	0	0	4226	942	33	4	1052	4	CYP4X1	1	47505153	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	836183	47505153	201745468	49	155634											
TTC39A	22996	broad.mit.edu	37	chr1	51760223	51760223	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggagaggatgaaaaagAgcaggagagggcagagggtc	21	3	0	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	51760223	C	C	51760223	1	2	194	0	1	0	0	0	0	0	0	0	16833	319	11	5		5	TTC39A	1	51760223	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	4255070	51760223	197490398	50	155635											
ZFYVE9	9372	broad.mit.edu	37	chr1	52628091	52628091	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatagatgcctggtataggtGtgcgcattgtcttggtaata	12	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52628091	A	A	52628091	1	1	194	0	1	0	0	0	0	0	0	0	17797	1392	48	4		4	ZFYVE9	1	52628091	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	867868	52628091	196622530	51	155636											
C8A	731	broad.mit.edu	37	chr1	57372551	57372551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggaagctattttttttcCcagttgattgcattttagtc	7	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	57372551	A	A	57372551	1	1	194	0	1	0	0	0	0	0	0	0	2441	638	22	2		2	C8A	1	57372551	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4744460	57372551	191878070	52	155637											
DNAJC6	9829	broad.mit.edu	37	chr1	65849892	65849892	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggatggacgggcggcatCatcaattctggttggtgcta	14	8	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	65849892	T	T	65849892	3	4	194	1	0	0	0	0	1	0	0	0	4693	838	29	4	534	4	DNAJC6	1	65849892	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	8477341	65849892	183400729	53	155638											
WLS	79971	broad.mit.edu	37	chr1	68624901	68624901	+	Frame_Shift_Del	DEL	A	-	-													gtcatcacggtaagccagggAaacgtccatggagacttctg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	68624901	-	-	68624901	7	5	194	1	0	1	0	1	0	0	0	0	17503	246	9	0	1382	0	WLS	1	68624901	Frame_Shift_Del	DEL	A	TCGA-67-3771-01A-01D-1040-01	2775009	68624901	180625720	54	155639											
RPE65	6121	broad.mit.edu	37	chr1	68915453	68915453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggaaaaaatttccccaCcaaaattcaagggtctttcc	6	11	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	68915453	A	A	68915453	1	1	194	0	1	0	0	0	0	0	0	0	13656	522	18	3		3	RPE65	1	68915453	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	290552	68915453	180335168	55	155640											
ACADM	34	broad.mit.edu	37	chr1	76216217	76216217	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaaaggaaaactttcggaAagctacttgtagaggtaatt	11	4	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	76216217	T	T	76216217	4	4	194	1	0	0	0	0	0	1	0	0	113	15	1	5	981	5	ACADM	1	76216217	Nonsense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	7300764	76216217	173034404	56	155641											
MSH4	4438	broad.mit.edu	37	chr1	76343962	76343962	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataaatgaatttcttgacaTagcaagaagaacatacacag	6	7	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	76343962	A	A	76343962	3	1	194	1	0	0	0	0	1	0	0	0	9966	1406	49	5	1541	5	MSH4	1	76343962	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	127745	76343962	172906659	57	155642											
MSH4	4438	broad.mit.edu	37	chr1	76349447	76349447	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcataactggaccaaacaTgagtggaaaatccacatatt	7	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	76349447	A	A	76349447	3	1	194	1	0	0	0	0	1	0	0	0	9966	1464	51	5	2106	5	MSH4	1	76349447	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	5485	76349447	172901174	58	155643											
LPHN2	23266	broad.mit.edu	37	chr1	82188849	82188849	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaccagtgtacctctgacCttctcatcaagagagctggg	9	12	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	82188849	A	A	82188849	1	1	194	0	1	0	0	0	0	0	0	0	9003	696	24	2		2	LPHN2	1	82188849	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	5839402	82188849	167061772	59	155644											
TTLL7	79739	broad.mit.edu	37	chr1	84399443	84399443	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaatcagggtctttaccaCcaattcctataagattgtga	6	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	84399443	A	A	84399443	3	1	194	1	0	0	0	0	1	0	0	0	16858	507	18	3	1820	3	TTLL7	1	84399443	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2210594	84399443	164851178	60	155645											
COL24A1	255631	broad.mit.edu	37	chr1	86578265	86578265	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacctttggaccaggtaaTccaggtaaaccaggatttcc	8	11	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	86578265	C	C	86578265	2	2	194	1	0	0	0	0	0	0	0	1	3715	1422	50	5		5	COL24A1	1	86578265	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	2178822	86578265	162672356	61	155646											
CLCA2	9635	broad.mit.edu	37	chr1	86919069	86919070	+	Frame_Shift_Del	DEL	GC	-	-													caggtaatattcagatgaatGctccaaggaaatcagtaggc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	86919070	-	-	86919069	7	5	194	1	0	1	0	1	0	0	0	0	3489	1319	46	0	2223	0	CLCA2	1	86919069	Frame_Shift_Del	DEL	GC	TCGA-67-3771-01A-01D-1040-01	340804	86919069	162331552	62	155647											
GBP5	115362	broad.mit.edu	37	chr1	89727872	89727872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatactctcatcgttacagGcaggggagagatgaaacaat	10	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	89727872	T	T	89727872	1	4	194	0	1	0	0	0	0	0	0	0	6339	1218	42	3		3	GBP5	1	89727872	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2808803	89727872	159522749	63	155648											
ABCA4	24	broad.mit.edu	37	chr1	94544950	94544950	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcagcaaaggctttgcCgccctccaagcgattttggt	9	14	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	94544950	A	A	94544950	2	1	194	1	0	0	0	0	0	0	0	1	34	639	23	1		1	ABCA4	1	94544950	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	4817078	94544950	154705671	64	155649											
ABCA4	24	broad.mit.edu	37	chr1	94564460	94564460	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaccgtctttgccccgcGtctctggctgaagatgatga	12	13	2	4	rs61748538		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	94564460	A	A	94564460	3	1	194	1	0	0	0	0	1	0	0	0	34	1145	40	4	6343	4	ABCA4	1	94564460	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	19510	94564460	154686161	65	155650											
COL11A1	1301	broad.mit.edu	37	chr1	103487276	103487276	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacttacaggctcaaccactGctggttctcctttctgtcct	6	14	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	103487276	C	C	103487276	3	2	194	1	0	0	0	0	1	0	0	0	3699	1319	46	4	4361	4	COL11A1	1	103487276	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	8922816	103487276	145763345	66	155651											
AMY2B	280	broad.mit.edu	37	chr1	104120405	104120405	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaactggtatgataatggGagcaaccaagtggcttttgg	12	6	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	104120405	T	T	104120405	2	4	194	1	0	0	0	0	0	0	0	1	595	1161	41	3		3	AMY2B	1	104120405	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	633129	104120405	145130216	67	155652											
VAV3	10451	broad.mit.edu	37	chr1	108307757	108307757	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagtctaaactagagatggCtgactccactccactgcagt	9	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	108307757	T	T	108307757	3	4	194	1	0	0	0	0	1	0	0	0	17260	797	28	4	1782	4	VAV3	1	108307757	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	4187352	108307757	140942864	68	155653											
GSTM2	2946	broad.mit.edu	37	chr1	110211845	110211845	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctcctctttgcccttgcAtatgggaaggggatgctggg	15	9	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	110211845	G	G	110211845	1	3	194	0	1	0	0	0	0	0	0	0	6904	232	8	5		5	GSTM2	1	110211845	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1904088	110211845	139038776	69	155654											
GSTM2	2946	broad.mit.edu	37	chr1	110213870	110213870	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgcatctgtgcagggagCttgtgtctgagggtgttgac	17	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	110213870	T	T	110213870	1	4	194	0	1	0	0	0	0	0	0	0	6904	812	28	4		4	GSTM2	1	110213870	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2025	110213870	139036751	70	155655											
AHCYL1	10768	broad.mit.edu	37	chr1	110551679	110551679	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccagtttgctgatgacatGcaggagttcaccaaattccc	8	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	110551679	A	A	110551679	3	1	194	1	0	0	0	0	1	0	0	0	410	1319	46	4	150	4	AHCYL1	1	110551679	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	337809	110551679	138698942	71	155656											
KCNA2	3737	broad.mit.edu	37	chr1	111147283	111147283	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgggtctcaaaccgcagcCctgagatgttgatcaccacc	10	14	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	111147283	G	G	111147283	3	3	194	1	0	0	0	0	1	0	0	0	8073	623	22	4	1381	4	KCNA2	1	111147283	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	595604	111147283	138103338	72	155657											
ADORA3	140	broad.mit.edu	37	chr1	112031646	112031646	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcatccatgaccatggcaTctgtgaaaacacacacacac	5	13	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	112031646	G	G	112031646	3	3	194	1	0	0	0	0	1	0	0	0	329	1449	50	5	601	5	ADORA3	1	112031646	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	884363	112031646	137218975	73	155658											
PTGFRN	5738	broad.mit.edu	37	chr1	117491979	117491979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcccgcgtgttggcgcGgcttgaccgtgattccctgg	15	13	0	2	rs149030409		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	117491979	T	T	117491979	3	4	194	1	0	0	0	0	1	0	0	0	12856	1116	39	1	1012	1	PTGFRN	1	117491979	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	5460333	117491979	131758642	74	155659											
MAN1A2	10905	broad.mit.edu	37	chr1	117948085	117948085	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaagaatgggcaaggatAtagtaatagaacccaaaatt	10	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	117948085	G	G	117948085	1	3	194	0	1	0	0	0	0	0	0	0	9303	464	16	5		5	MAN1A2	1	117948085	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	456106	117948085	131302536	75	155660											
RPRD2	23248	broad.mit.edu	37	chr1	150437062	150437062	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagccccagcaacctcaccAgtggcctgaaaacacctgca	7	18	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	150437062	G	G	150437062	3	3	194	1	0	0	0	0	1	0	0	0	13728	188	7	5	1509	5	RPRD2	1	150437062	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	32488977	150437062	98813559	76	155661											
TARS2	80222	broad.mit.edu	37	chr1	150460192	150460192	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagctcgaaggacccccagCctagggtcttgtatcaccca	10	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	150460192	T	T	150460192	1	4	194	0	1	0	0	0	0	0	0	0	15679	754	26	4		4	TARS2	1	150460192	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	23130	150460192	98790429	77	155662											
SETDB1	9869	broad.mit.edu	37	chr1	150935522	150935522	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gccgaaagcccactgctggtCagacttcggctacagcggtt	12	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	150935522	G	G	150935522	3	3	194	1	0	0	0	0	1	0	0	0	14251	827	29	4	3434	4	SETDB1	1	150935522	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	475330	150935522	98315099	78	155663											
PI4KB	5298	broad.mit.edu	37	chr1	151266850	151266850	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgacagagaaagaatacaaTgacccccgagaggcacctct	9	11	1	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	151266850	C	C	151266850	1	2	194	0	1	0	0	0	0	0	0	0	11969	1479	51	5		5	PI4KB	1	151266850	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	331328	151266850	97983771	79	155664											
TCHHL1	126637	broad.mit.edu	37	chr1	152059275	152059275	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaactgggctcatcttctcTttgtaggggtggttcttgta	12	7	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	152059275	C	C	152059275	3	2	194	1	0	0	0	0	1	0	0	0	15823	1617	56	5	1835	5	TCHHL1	1	152059275	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	792425	152059275	97191346	80	155665											
TCHH	7062	broad.mit.edu	37	chr1	152083697	152083697	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagccgctgctcgagcctctCttcctcctcctcgcgcttca	7	20	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	152083697	G	G	152083697	3	3	194	1	0	0	0	0	1	0	0	0	15822	922	32	4	3839	4	TCHH	1	152083697	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	24422	152083697	97166924	81	155666											
FLG	2312	broad.mit.edu	37	chr1	152281538	152281538	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaagcagatccaagatGgtttctggaagcagacccag	10	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	152281538	T	T	152281538	3	4	194	1	0	0	0	0	1	0	0	0	5979	1348	47	2	6365	2	FLG	1	152281538	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	197841	152281538	96969083	82	155667											
KPRP	448834	broad.mit.edu	37	chr1	152733553	152733553	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagggagacttggcgcAgccccagcccatgctggggc	15	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	152733553	T	T	152733553	3	4	194	1	0	0	0	0	1	0	0	0	8507	188	7	5	1491	5	KPRP	1	152733553	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	452015	152733553	96517068	83	155668											
PGLYRP4	57115	broad.mit.edu	37	chr1	153303170	153303170	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggcaaaaggtgttgagcCaagctggatggttaggacag	17	5	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	153303170	A	A	153303170	1	1	194	0	1	0	0	0	0	0	0	0	11891	609	21	2		2	PGLYRP4	1	153303170	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	569617	153303170	95947451	84	155669											
UBAP2L	9898	broad.mit.edu	37	chr1	154207796	154207796	+	Intron	DEL	G	-	-													tttgttgggggatggatattGggggcaggttactctttatt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	154207796	-	-	154207796	6	5	194	0	1	1	0	1	0	0	0	0	16964	1363	47	0		0	UBAP2L	1	154207796	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	904626	154207796	95042825	85	155670											
TDRD10	126668	broad.mit.edu	37	chr1	154479295	154479295	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accacagtacctattcggtgGttatatgatggtgaactatc	9	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	154479295	A	A	154479295	1	1	194	0	1	0	0	0	0	0	0	0	15853	1276	44	4		4	TDRD10	1	154479295	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	271499	154479295	94771326	86	155671											
C1orf61	10485	broad.mit.edu	37	chr1	156384530	156384530	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtggtgcagaacccaccCgccccaggtgagaagctaaa	13	12	0	2	rs144548564		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	156384530	G	G	156384530	2	3	194	1	0	0	0	0	0	0	0	1	2074	639	23	4		4	C1orf61	1	156384530	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1905235	156384530	92866091	87	155672											
TTC24	164118	broad.mit.edu	37	chr1	156554719	156554719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggccagccaggcggaGgggaccccagcaaaggcagg	20	11	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	156554719	T	T	156554719	3	4	194	1	0	0	0	0	1	0	0	0	16818	991	35	2	1324	2	TTC24	1	156554719	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	170189	156554719	92695902	88	155673											
APOA1BP	128240	broad.mit.edu	37	chr1	156562641	156562642	+	Intron	INS	-	CA	CA													aaagtgtgctccatgagtccINScacacaccaccttctctaaa					rs148811958	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	CA	156562642	CA	CA	156562641	6	5	194	0	1	1	1	0	0	0	0	0	783	638	22	0		0	APOA1BP	1	156562641	Intron	INS	-	TCGA-67-3771-01A-01D-1040-01	7922	156562641	92687980	89	155674											
BCAN	63827	broad.mit.edu	37	chr1	156618623	156618623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agactggcttccccaataagCacagccgcttcaacgtctac	7	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	156618623	T	T	156618623	3	4	194	1	0	0	0	0	1	0	0	0	1350	710	25	4	1051	4	BCAN	1	156618623	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	55982	156618623	92631998	90	155675											
SH2D2A	9047	broad.mit.edu	37	chr1	156776986	156776986	+	Missense_Mutation	SNP	A	C	C													ccgcctactgaggaggcccaAggggaagccatgcctgtcct							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	156776986	C	C	156776986	3	2	194	1	0	0	0	0	1	0	0	0	14345	72	3	5	19	5	SH2D2A	1	156776986	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	158363	156776986	92473635	91	155676	666	2									
SH2D2A	9047	broad.mit.edu	37	chr1	156776988	156776988	+	Silent	SNP	G	A	A													gcctactgaggaggcccaagGggaagccatgcctgtcctct							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	156776988	A	A	156776988	2	1	194	1	0	0	0	0	0	0	0	1	14345	1219	43	4		4	SH2D2A	1	156776988	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	2	156776988	92473633	92	155677	666	2									
INSRR	3645	broad.mit.edu	37	chr1	156816691	156816691	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccagccacctgttagacCttggcaagggggggcggagg	16	11	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	156816691	A	A	156816691	1	1	194	0	1	0	0	0	0	0	0	0	7844	696	24	2		2	INSRR	1	156816691	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	39703	156816691	92433930	93	155678											
FCRL4	83417	broad.mit.edu	37	chr1	157551288	157551288	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttcaggggaaggaacagGgcaggaactgtggcaaagaa	17	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	157551288	A	A	157551288	1	1	194	0	1	0	0	0	0	0	0	0	5854	1247	43	4		4	FCRL4	1	157551288	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	734597	157551288	91699333	94	155679											
FCRL4	83417	broad.mit.edu	37	chr1	157551323	157551323	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaaaagagcacaaacctGacttcctccgacgccagcag	8	13	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	157551323	T	T	157551323	4	4	194	1	0	0	0	0	0	1	0	0	5854	1294	45	3	324	3	FCRL4	1	157551323	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	35	157551323	91699298	95	155680											
FCRL2	79368	broad.mit.edu	37	chr1	157719510	157719510	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttcagagaaggaagcTttatctcttaaaattttgac	6	6	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	157719510	A	A	157719510	1	1	194	0	1	0	0	0	0	0	0	0	5852	1624	56	5		5	FCRL2	1	157719510	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	168187	157719510	91531111	96	155681											
SPTA1	6708	broad.mit.edu	37	chr1	158607701	158607701	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaccttaagctgaggcaaaCatgaagtagtgctatcttca	8	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	158607701	T	T	158607701	1	4	194	0	1	0	0	0	0	0	0	0	15234	493	17	4		4	SPTA1	1	158607701	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	888191	158607701	90642920	97	155682											
CADM3	57863	broad.mit.edu	37	chr1	159161976	159161976	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggctgagaaacatggtggTctgctgtttgaggatgtaac	15	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	159161976	C	C	159161976	1	2	194	0	1	0	0	0	0	0	0	0	2594	1682	58	5		5	CADM3	1	159161976	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	554275	159161976	90088645	98	155683											
CCDC19	25790	broad.mit.edu	37	chr1	159889169	159889169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggccatgttctttcctGggaaggagaatgggaatgtg	14	7	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	159889169	T	T	159889169	1	4	194	0	1	0	0	0	0	0	0	0	2822	1363	47	2		2	CCDC19	1	159889169	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	727193	159889169	89361452	99	155684											
ATP1A4	480	broad.mit.edu	37	chr1	160147170	160147170	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcttaggcagctgatggCaagattcttccgcattactc	10	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	160147170	T	T	160147170	1	4	194	0	1	0	0	0	0	0	0	0	1135	725	25	4		4	ATP1A4	1	160147170	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	258001	160147170	89103451	100	155685											
CASQ1	844	broad.mit.edu	37	chr1	160164856	160164856	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aacgagagctgcaggcgtttGagaatattgaggatgagatc	14	5	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	160164856	C	C	160164856	3	2	194	1	0	0	0	0	1	0	0	0	2706	1291	45	4	534	4	CASQ1	1	160164856	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	17686	160164856	89085765	101	155686											
DCAF8	50717	broad.mit.edu	37	chr1	160209914	160209914	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcctcttcctcttcctctGagcggtcatggactcgattt	7	15	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	160209914	C	C	160209914	4	2	194	1	0	0	0	0	0	1	0	0	4309	1294	45	4	1541	4	DCAF8	1	160209914	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	45058	160209914	89040707	102	155687											
SLAMF6	114836	broad.mit.edu	37	chr1	160458763	160458763	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagcccctgtcgctgtgGctgtcttctcctcccctcag	9	17	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	160458763	C	C	160458763	1	2	194	0	1	0	0	0	0	0	0	0	14481	1218	42	4		4	SLAMF6	1	160458763	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	248849	160458763	88791858	103	155688											
ITLN2	142683	broad.mit.edu	37	chr1	160924390	160924390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctggaatatgccccacGgctgtccaacactacaaata	6	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	160924390	T	T	160924390	1	4	194	0	1	0	0	0	0	0	0	0	7981	1131	39	1		1	ITLN2	1	160924390	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	465627	160924390	88326231	104	155689											
HSPA6	3310	broad.mit.edu	37	chr1	161495729	161495729	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actatccccaccaagcagacCcagactttcaccacctactc	3	19	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	161495729	A	A	161495729	2	1	194	1	0	0	0	0	0	0	0	1	7484	610	22	2		2	HSPA6	1	161495729	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	571339	161495729	87754892	105	155690											
FCGR3A	2214	broad.mit.edu	37	chr1	161519645	161519645	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacccatctctgtcaccCaccaatttccttttcttgaa	2	17	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	161519645	A	A	161519645	1	1	194	0	1	0	0	0	0	0	0	0	5841	609	21	2		2	FCGR3A	1	161519645	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	23916	161519645	87730976	106	155691											
MAEL	84944	broad.mit.edu	37	chr1	166960580	166960580	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtctaaaagtgcccagcaaGagtttatgtggccaatcatt	10	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	166960580	A	A	166960580	1	1	194	0	1	0	0	0	0	0	0	0	9242	957	33	4		4	MAEL	1	166960580	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	5440935	166960580	82290041	107	155692											
F5	2153	broad.mit.edu	37	chr1	169528470	169528470	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctcttgctttcatcaaaCacagcaaatagtagcacgat	6	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	169528470	T	T	169528470	2	4	194	1	0	0	0	0	0	0	0	1	5391	465	17	4		4	F5	1	169528470	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2567890	169528470	79722151	108	155693											
KLHL20	27252	broad.mit.edu	37	chr1	173703396	173703396	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgagttgctaaggatagcaGacaagttcacccaacataac	9	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	173703396	C	C	173703396	3	2	194	1	0	0	0	0	1	0	0	0	8446	942	33	4	574	4	KLHL20	1	173703396	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4174926	173703396	75547225	109	155694											
RFWD2	64326	broad.mit.edu	37	chr1	175957454	175957454	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataatctccattggaagccaGgcctacaaagtttttttcat	6	9	2	0	rs142920790	byFrequency;by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	175957454	A	A	175957454	2	1	194	1	0	0	0	0	0	0	0	1	13368	991	35	4		4	RFWD2	1	175957454	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	2254058	175957454	73293167	110	155695											
PAPPA2	60676	broad.mit.edu	37	chr1	176809429	176809430	+	Intron	INS	-	G	G													gagtgagagaacctggggatINSgggggaggcagtggcttcag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	176809430	G	G	176809429	6	5	194	0	1	1	1	0	0	0	0	0	11527	1479	51	0		0	PAPPA2	1	176809429	Intron	INS	-	TCGA-67-3771-01A-01D-1040-01	851975	176809429	72441192	111	155696											
ASTN1	460	broad.mit.edu	37	chr1	176833754	176833754	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactctaaacttcaagagggAagagtgtggtgtgttttgct	13	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	176833754	T	T	176833754	1	4	194	0	1	0	0	0	0	0	0	0	1068	261	9	5		5	ASTN1	1	176833754	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	24325	176833754	72416867	112	155697											
ASTN1	460	broad.mit.edu	37	chr1	176838157	176838157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagattgtagatcttgtctGctatttctgaggaaggagga	13	4	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	176838157	T	T	176838157	3	4	194	1	0	0	0	0	1	0	0	0	1068	1319	46	3	426	3	ASTN1	1	176838157	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4403	176838157	72412464	113	155698											
ABL2	27	broad.mit.edu	37	chr1	179077723	179077723	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaagtcgtgccccaccattCttctctttacccttgggggc	8	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	179077723	G	G	179077723	3	3	194	1	0	0	0	0	1	0	0	0	93	912	32	4	873	4	ABL2	1	179077723	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2239566	179077723	70172898	114	155699											
CACNA1E	777	broad.mit.edu	37	chr1	181480712	181480712	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtatcatgaggtggctgGgggcagggaacctggggtgg	21	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	181480712	T	T	181480712	1	4	194	0	1	0	0	0	0	0	0	0	2568	1247	43	2		2	CACNA1E	1	181480712	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2402989	181480712	67769909	115	155700											
CACNA1E	777	broad.mit.edu	37	chr1	181719672	181719672	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgatacaaggaatgagttGgaggagcgagaaagtatggt	15	3	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	181719672	T	T	181719672	1	4	194	0	1	0	0	0	0	0	0	0	2568	1363	47	2		2	CACNA1E	1	181719672	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	238960	181719672	67530949	116	155701											
CACNA1E	777	broad.mit.edu	37	chr1	181753014	181753014	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atatttgaactgtcatctatCcagttaaggacacaataatg	6	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	181753014	G	G	181753014	1	3	194	0	1	0	0	0	0	0	0	0	2568	870	30	4		4	CACNA1E	1	181753014	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	33342	181753014	67497607	117	155702											
C1orf21	81563	broad.mit.edu	37	chr1	184535642	184535642	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggatttcagtgtgtcttTggatggcaagcattaagaga	14	4	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	184535642	C	C	184535642	1	2	194	0	1	0	0	0	0	0	0	0	2049	1827	63	5		5	C1orf21	1	184535642	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	2782628	184535642	64714979	118	155703											
HMCN1	83872	broad.mit.edu	37	chr1	185815085	185815085	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactgcaaggtgaaaagacAtctataaacacaagaaagtc	8	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	185815085	G	G	185815085	1	3	194	0	1	0	0	0	0	0	0	0	7287	232	8	5		5	HMCN1	1	185815085	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1279443	185815085	63435536	119	155704											
HMCN1	83872	broad.mit.edu	37	chr1	185953209	185953209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttatagacttttagtaaCccagttgggaaaaaaagaaa	8	4	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	185953209	A	A	185953209	1	1	194	0	1	0	0	0	0	0	0	0	7287	522	18	3		3	HMCN1	1	185953209	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	138124	185953209	63297412	120	155705											
PRG4	10216	broad.mit.edu	37	chr1	186275424	186275424	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaaaatattctaaaaTaacaagatgtatattttttc	3	3	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	186275424	A	A	186275424	1	1	194	0	1	0	0	0	0	0	0	0	12587	1421	49	5		5	PRG4	1	186275424	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	322215	186275424	62975197	121	155706											
FAM5C	339479	broad.mit.edu	37	chr1	190068179	190068179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcggacacgtgcacgagtGcgtctcttctgaaaagctgc	11	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	190068179	T	T	190068179	3	4	194	1	0	0	0	0	1	0	0	0	5645	1319	46	3	1034	3	FAM5C	1	190068179	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3792755	190068179	59182442	122	155707											
DENND1B	163486	broad.mit.edu	37	chr1	197704817	197704817	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaggtctaccccggacacGggaggcgctacgccaggacc	13	15	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	197704817	A	A	197704817	1	1	194	0	1	0	0	0	0	0	0	0	4467	1131	39	4		4	DENND1B	1	197704817	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	7636638	197704817	51545804	123	155708											
IGFN1	91156	broad.mit.edu	37	chr1	201195334	201195334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcacccaagcatggcaagCgcgcaggatagggactgtgg	15	10	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	201195334	A	A	201195334	1	1	194	0	1	0	0	0	0	0	0	0	7660	783	27	3		3	IGFN1	1	201195334	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3490517	201195334	48055287	124	155709											
PRELP	5549	broad.mit.edu	37	chr1	203455883	203455883	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctagtggcgttccatgaCttctcctcggacctggagaa	11	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	203455883	T	T	203455883	2	4	194	1	0	0	0	0	0	0	0	1	12579	564	20	4		4	PRELP	1	203455883	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2260549	203455883	45794738	125	155710											
SOX13	9580	broad.mit.edu	37	chr1	204086867	204086867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaggttccaccactgcGgccagcctgtcctgaggtca	13	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	204086867	T	T	204086867	1	4	194	0	1	0	0	0	0	0	0	0	15058	1131	39	1		1	SOX13	1	204086867	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	630984	204086867	45163754	126	155711											
GOLT1A	127845	broad.mit.edu	37	chr1	204183019	204183019	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atcccacttactctgccattCggtgatggagatcatgccgc	9	13	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	204183019	G	G	204183019	3	3	194	1	0	0	0	0	1	0	0	0	6634	893	31	4	402	4	GOLT1A	1	204183019	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	96152	204183019	45067602	127	155712											
PLEKHA6	22874	broad.mit.edu	37	chr1	204228926	204228926	+	Intron	DEL	G	-	-													gcccagcatggagtggggcaGggggtgccagactgggaaga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	204228926	-	-	204228926	6	5	194	0	1	1	0	1	0	0	0	0	12155	1015	35	0		0	PLEKHA6	1	204228926	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	45907	204228926	45021695	128	155713											
TMCC2	9911	broad.mit.edu	37	chr1	205237982	205237982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttggactcctgcatccAttttctagatagaaaaacca	5	10	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	205237982	G	G	205237982	1	3	194	0	1	0	0	0	0	0	0	0	16116	232	8	5		5	TMCC2	1	205237982	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1009056	205237982	44012639	129	155714											
KLHDC8A	55220	broad.mit.edu	37	chr1	205307614	205307614	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattccagcgtgaaagcgcCatccttaccaagtcccccag	7	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	205307614	A	A	205307614	1	1	194	0	1	0	0	0	0	0	0	0	8433	609	21	2		2	KLHDC8A	1	205307614	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	69632	205307614	43943007	130	155715											
CR1	1378	broad.mit.edu	37	chr1	207741152	207741152	+	Intron	DEL	T	-	-													tcctgaatgaaacttagagcTtttgtatgttttctagaaat							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	207741152	-	-	207741152	6	5	194	0	1	1	0	1	0	0	0	0	3872	1624	56	0		0	CR1	1	207741152	Intron	DEL	T	TCGA-67-3771-01A-01D-1040-01	2433538	207741152	41509469	131	155716											
PTPN14	5784	broad.mit.edu	37	chr1	214551349	214551349	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaactcgattctcttcccGccctgagactcgagccaccg	7	17	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	214551349	A	A	214551349	3	1	194	1	0	0	0	0	1	0	0	0	12889	1086	38	4	946	4	PTPN14	1	214551349	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6810197	214551349	34699272	132	155717											
PTPN14	5784	broad.mit.edu	37	chr1	214557780	214557780	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggttgtaggcatgggtgTtgataatgttgaggtttctc	15	4	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	214557780	A	A	214557780	3	1	194	1	0	0	0	0	1	0	0	0	12889	1725	60	5	2173	5	PTPN14	1	214557780	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	6431	214557780	34692841	133	155718											
USH2A	7399	broad.mit.edu	37	chr1	215812473	215812473	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagatgaataggtgctacgCcaagtataatatgagttgtt	11	4	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	215812473	G	G	215812473	1	3	194	0	1	0	0	0	0	0	0	0	17162	754	26	4		4	USH2A	1	215812473	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1254693	215812473	33438148	134	155719											
USH2A	7399	broad.mit.edu	37	chr1	216257003	216257003	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaagggtgctaagaaacTctaggacacagtctgccact	10	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	216257003	A	A	216257003	1	1	194	0	1	0	0	0	0	0	0	0	17162	1566	54	5		5	USH2A	1	216257003	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	444530	216257003	32993618	135	155720											
USH2A	7399	broad.mit.edu	37	chr1	216348824	216348824	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcctcagttgtgctggtGctaaatattagaaaacacct	10	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	216348824	A	A	216348824	3	1	194	1	0	0	0	0	1	0	0	0	17162	1333	46	4	11433	4	USH2A	1	216348824	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	91821	216348824	32901797	136	155721											
USH2A	7399	broad.mit.edu	37	chr1	216465430	216465430	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtacatccttaaataagaTagcaataacataatttaaaa	3	5	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	216465430	A	A	216465430	1	1	194	0	1	0	0	0	0	0	0	0	17162	1421	49	5		5	USH2A	1	216465430	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	116606	216465430	32785191	137	155722											
GPATCH2	55105	broad.mit.edu	37	chr1	217784228	217784228	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accagggagccagtgctactGacctcttctgcttgggtgtg	13	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	217784228	A	A	217784228	1	1	194	0	1	0	0	0	0	0	0	0	6656	1305	45	4		4	GPATCH2	1	217784228	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1318798	217784228	31466393	138	155723											
C1orf69	200205	broad.mit.edu	37	chr1	228363178	228363178	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccaggtggccttagccgcAtctgtgccagactggtggcc	14	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	228363178	G	G	228363178	2	3	194	1	0	0	0	0	0	0	0	1	2079	204	8	5		5	C1orf69	1	228363178	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	10578950	228363178	20887443	139	155724											
OBSCN	84033	broad.mit.edu	37	chr1	228559464	228559464	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctccgggggggcccctatCagggacatggggcaccctca	14	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	228559464	G	G	228559464	3	3	194	1	0	0	0	0	1	0	0	0	10907	816	29	4	22565	4	OBSCN	1	228559464	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	196286	228559464	20691157	140	155725											
TARBP1	6894	broad.mit.edu	37	chr1	234593467	234593467	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctcttgtctcagagacatGagaaaagttgagacatcaga	9	8	3	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	234593467	A	A	234593467	2	1	194	1	0	0	0	0	0	0	0	1	15674	1277	45	4		4	TARBP1	1	234593467	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	6034003	234593467	14657154	141	155726											
NID1	4811	broad.mit.edu	37	chr1	236195689	236195689	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acccactaattttaatgtcgGatataaattaccggtgatgc	7	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	236195689	A	A	236195689	1	1	194	0	1	0	0	0	0	0	0	0	10509	1189	41	4		4	NID1	1	236195689	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1602222	236195689	13054932	142	155727											
ERO1LB	56605	broad.mit.edu	37	chr1	236415488	236415488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattgctctatttcatcaaGcattttactctatgaggggc	8	9	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	236415488	T	T	236415488	1	4	194	0	1	0	0	0	0	0	0	0	5282	986	34	3		3	ERO1LB	1	236415488	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	219799	236415488	12835133	143	155728											
ACTN2	88	broad.mit.edu	37	chr1	236918345	236918345	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccggagctccatccagatCacaggagccctggaagacca	11	15	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	236918345	T	T	236918345	2	4	194	1	0	0	0	0	0	0	0	1	205	816	29	4		4	ACTN2	1	236918345	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	502857	236918345	12332276	144	155729											
MTR	4548	broad.mit.edu	37	chr1	236975957	236975957	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaatagttcacaggtgCcagacctacactcgagatac	8	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	236975957	T	T	236975957	1	4	194	0	1	0	0	0	0	0	0	0	10052	754	26	4		4	MTR	1	236975957	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	57612	236975957	12274664	145	155730											
RYR2	6262	broad.mit.edu	37	chr1	237753224	237753224	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccatttgccgttaatacaAacagggatattaccatgtgg	8	8	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	237753224	G	G	237753224	3	3	194	1	0	0	0	0	1	0	0	0	13880	14	1	5	3848	5	RYR2	1	237753224	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	777267	237753224	11497397	146	155731											
RYR2	6262	broad.mit.edu	37	chr1	237838201	237838201	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttgttgtttttaatgtttAcaacatcaggatatagaaca	7	4	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	237838201	T	T	237838201	1	4	194	0	1	0	0	0	0	0	0	0	13880	406	14	5		5	RYR2	1	237838201	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	84977	237838201	11412420	147	155732											
RGS7	6000	broad.mit.edu	37	chr1	240964831	240964831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgtatgtggggtaggataGgatgaagggaaataagggaa	17	1	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	240964831	T	T	240964831	1	4	194	0	1	0	0	0	0	0	0	0	13419	1015	35	2		2	RGS7	1	240964831	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3126630	240964831	8285790	148	155733											
KMO	8564	broad.mit.edu	37	chr1	241731983	241731983	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaggtaagtccctcaaataCttctgggtcagtctcagcta	8	11	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	241731983	G	G	241731983	1	3	194	0	1	0	0	0	0	0	0	0	8495	580	20	4		4	KMO	1	241731983	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	767152	241731983	7518638	149	155734											
KMO	8564	broad.mit.edu	37	chr1	241755136	241755136	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtcatgcaagtaaattGttgtttcaggttaaagaaca	11	4	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	241755136	C	C	241755136	1	2	194	0	1	0	0	0	0	0	0	0	8495	1392	48	4		4	KMO	1	241755136	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	23153	241755136	7495485	150	155735											
C1orf101	257044	broad.mit.edu	37	chr1	244716037	244716037	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgtggatttataagactggGaggaattgtaaatcttcctg	11	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	244716037	A	A	244716037	3	1	194	1	0	0	0	0	1	0	0	0	1996	1174	41	4	984	4	C1orf101	1	244716037	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2960901	244716037	4534584	151	155736											
OR2W5	441932	broad.mit.edu	37	chr1	247654775	247654775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccgagtgcgtcctcctgGttgtcatgtcccatgaccgc	10	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	247654775	A	A	247654775	3	1	194	1	0	0	0	0	1	0	0	0	11128	1261	44	4	348	4	OR2W5	1	247654775	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2938738	247654775	1595846	152	155737											
OR2C3	81472	broad.mit.edu	37	chr1	247695646	247695646	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaagtacataggtgtgtgGaggtgcacatctgtatggga	15	4	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695646	T	T	247695646	2	4	194	1	0	0	0	0	0	0	0	1	11087	1161	41	3		3	OR2C3	1	247695646	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	40871	247695646	1554975	153	155738											
OR13G1	441933	broad.mit.edu	37	chr1	247836167	247836167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaacagccagtgtcagaagGaaaacatacatgggcgtatg	11	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	247836167	T	T	247836167	3	4	194	1	0	0	0	0	1	0	0	0	11036	1165	41	3	750	3	OR13G1	1	247836167	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	140521	247836167	1414454	154	155739											
OR2W3	343171	broad.mit.edu	37	chr1	248059305	248059305	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgatcatgaaccccagGctctgccggggcttggtgtc	14	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059305	T	T	248059305	3	4	194	1	0	0	0	0	1	0	0	0	11127	1194	42	3	419	3	OR2W3	1	248059305	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	223138	248059305	1191316	155	155740											
OR2M2	391194	broad.mit.edu	37	chr1	248343411	248343411	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttagtggccttcatgggaAactctgtcatggttctcctc	9	10	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	248343411	T	T	248343411	3	4	194	1	0	0	0	0	1	0	0	0	11104	14	1	5	126	5	OR2M2	1	248343411	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	284106	248343411	907210	156	155741											
OR2T3	343173	broad.mit.edu	37	chr1	248636502	248636502	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaacttgacctaagattTgaacttatgattttatgtca	5	6	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	248636502	C	C	248636502	1	2	194	0	1	0	0	0	0	0	0	0	11117	1827	63	5		5	OR2T3	1	248636502	5'Flank	SNP	T	TCGA-67-3771-01A-01D-1040-01	293091	248636502	614119	157	155742											
OR2T34	127068	broad.mit.edu	37	chr1	248737412	248737412	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgagctggagatgaccatgAtgggggtgagaagcatgagg	18	4	0	6			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	248737412	G	G	248737412	3	3	194	1	0	0	0	0	1	0	0	0	11119	333	12	5	313	5	OR2T34	1	248737412	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	100910	248737412	513209	158	155743											
OR2T27	403239	broad.mit.edu	37	chr1	248813783	248813783	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagatcttgcggctcatgaGgacaggatagtgcagagggt	16	7	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	248813783	C	C	248813783	3	2	194	1	0	0	0	0	1	0	0	0	11115	1000	35	4	553	4	OR2T27	1	248813783	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	76371	248813783	436838	159	155744											
ZNF692	55657	broad.mit.edu	37	chr1	249144947	249144947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctagtgcggaaagacCgggcgcagaactcacagatg	14	10	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	249144947	A	A	249144947	3	1	194	1	0	0	0	0	1	0	0	0	18224	652	23	1	380	1	ZNF692	1	249144947	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	331164	249144947	105674	160	155745											
TMEM18	129787	broad.mit.edu	37	chr2	669766	669766	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catctacgtaccacaatgatCatggcattcaccagcagtgg	8	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	669766	G	G	669766	3	3	194	1	0	0	0	0	1	0	0	0	16221	826	29	4	112	4	TMEM18	2	669766	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01		669766	242529607	161	155746											
TPO	7173	broad.mit.edu	37	chr2	1418261	1418261	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttcatctcgagagggaaAgaactcctttggggtaagta	11	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	1418261	G	G	1418261	2	3	194	1	0	0	0	0	0	0	0	1	16534	69	3	5		5	TPO	2	1418261	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	748495	1418261	241781112	162	155747											
PXDN	7837	broad.mit.edu	37	chr2	1639197	1639197	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactttgcattcacaaatggTgcatgcatcttttttccact	5	11	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1639197	A	A	1639197	3	1	194	1	0	0	0	0	1	0	0	0	12955	1696	59	5	144	5	PXDN	2	1639197	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	220936	1639197	241560176	163	155748											
COLEC11	78989	broad.mit.edu	37	chr2	3685153	3685153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaaaggacagaaaggcaGtgtgggtcgtcatggaaaaa	15	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3685153	T	T	3685153	3	4	194	1	0	0	0	0	1	0	0	0	3743	1029	36	3	326	3	COLEC11	2	3685153	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2045956	3685153	239514220	164	155749											
ALLC	55821	broad.mit.edu	37	chr2	3726108	3726108	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatacggagtttgggaaatgGatggatggctgggagaccag	17	4	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	3726108	A	A	3726108	4	1	194	1	0	0	0	0	0	1	0	0	534	1183	41	4	145	4	ALLC	2	3726108	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	40955	3726108	239473265	165	155750											
CMPK2	129607	broad.mit.edu	37	chr2	7001425	7001425	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atagttggttcatcatcaaaGatcttcctccactggccaat	6	11	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	7001425	C	C	7001425	3	2	194	1	0	0	0	0	1	0	0	0	3613	932	33	4	479	4	CMPK2	2	7001425	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3275317	7001425	236197948	166	155751											
KIDINS220	57498	broad.mit.edu	37	chr2	8888088	8888088	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgagatgttgggagccgcCagggtaataccttggcgtgt	16	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	8888088	G	G	8888088	3	3	194	1	0	0	0	0	1	0	0	0	8341	594	21	4	1882	4	KIDINS220	2	8888088	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1886663	8888088	234311285	167	155752											
RAD51AP2	729475	broad.mit.edu	37	chr2	17699799	17699799	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaagacctggccttagcctAatctcagggtttgccccacc	8	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	17699799	T	T	17699799	1	4	194	0	1	0	0	0	0	0	0	0	13095	377	13	5		5	RAD51AP2	2	17699799	5'Flank	SNP	A	TCGA-67-3771-01A-01D-1040-01	8811711	17699799	225499574	168	155753											
KCNS3	3790	broad.mit.edu	37	chr2	18112823	18112823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatccagcgtactgcctgtCcgctaagcttatcgctatct	8	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18112823	A	A	18112823	3	1	194	1	0	0	0	0	1	0	0	0	8160	855	30	3	550	3	KCNS3	2	18112823	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	413024	18112823	225086550	169	155754											
NT5C1B	93034	broad.mit.edu	37	chr2	18765288	18765288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaattggatgccctcccaaGggttggcctgggtccctccc	12	14	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	18765288	T	T	18765288	1	4	194	0	1	0	0	0	0	0	0	0	10781	1015	35	2		2	NT5C1B	2	18765288	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	652465	18765288	224434085	170	155755											
SDC1	6382	broad.mit.edu	37	chr2	20404000	20404000	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atagccgtcaggagctgcgtGtccttccaagtggagggggt	16	9	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20404000	A	A	20404000	2	1	194	1	0	0	0	0	0	0	0	1	14064	1368	48	4		4	SDC1	2	20404000	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	1638712	20404000	222795373	171	155756											
APOB	338	broad.mit.edu	37	chr2	21227066	21227066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaatctctgaatatttGgtcctgaattaaatgtatct	9	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	21227066	T	T	21227066	1	4	194	0	1	0	0	0	0	0	0	0	787	1363	47	2		2	APOB	2	21227066	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	823066	21227066	221972307	172	155757											
APOB	338	broad.mit.edu	37	chr2	21234952	21234952	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatattcagaacgcagcagTgcattttgcttagagaaggt	11	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	21234952	C	C	21234952	2	2	194	1	0	0	0	0	0	0	0	1	787	1683	59	5		5	APOB	2	21234952	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	7886	21234952	221964421	173	155758											
APOB	338	broad.mit.edu	37	chr2	21235014	21235014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaagttcttatacttccCattggtgtcagattttaaag	8	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	21235014	A	A	21235014	3	1	194	1	0	0	0	0	1	0	0	0	787	594	21	2	8981	2	APOB	2	21235014	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	62	21235014	221964359	174	155759											
FKBP1B	2281	broad.mit.edu	37	chr2	24276675	24276675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatctccatggcatggaggGgaatgcaggctggagctctt	15	9	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	24276675	A	A	24276675	1	1	194	0	1	0	0	0	0	0	0	0	5964	1247	43	4		4	FKBP1B	2	24276675	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3041661	24276675	218922698	175	155760											
NCOA1	8648	broad.mit.edu	37	chr2	24920559	24920559	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattgatactagttccctgAgagctgctggcagaactggt	11	9	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	24920559	G	G	24920559	3	3	194	1	0	0	0	0	1	0	0	0	10323	296	11	5	867	5	NCOA1	2	24920559	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	643884	24920559	218278814	176	155761											
GPR113	165082	broad.mit.edu	37	chr2	26533740	26533740	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctctgacagcgaaggtctCagcaacttcagcatggccat	9	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26533740	T	T	26533740	2	4	194	1	0	0	0	0	0	0	0	1	6695	813	29	4		4	GPR113	2	26533740	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1613181	26533740	216665633	177	155762											
TMEM214	54867	broad.mit.edu	37	chr2	27263151	27263151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcactgtgtggcctgaGtctttagggccaggatgcag	15	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	27263151	T	T	27263151	1	4	194	0	1	0	0	0	0	0	0	0	16260	1044	36	3		3	TMEM214	2	27263151	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	729411	27263151	215936222	178	155763											
SLC30A3	7781	broad.mit.edu	37	chr2	27481775	27481775	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggtttggactcctcaggGaggggctctgagggctctgt	16	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	27481775	T	T	27481775	2	4	194	1	0	0	0	0	0	0	0	1	14670	1161	41	3		3	SLC30A3	2	27481775	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	218624	27481775	215717598	179	155764											
TRIM54	57159	broad.mit.edu	37	chr2	27521391	27521391	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcctcctccgagtcccttCatgcctccccgtgcctgttc	7	20	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	27521391	T	T	27521391	1	4	194	0	1	0	0	0	0	0	0	0	16653	841	29	4		4	TRIM54	2	27521391	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	39616	27521391	215677982	180	155765											
C2orf16	84226	broad.mit.edu	37	chr2	27800472	27800472	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtcattacatcacgtcccaGattctgcttcagggatgaca	8	11	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	27800472	C	C	27800472	3	2	194	1	0	0	0	0	1	0	0	0	2179	942	33	4	1035	4	C2orf16	2	27800472	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	279081	27800472	215398901	181	155766											
TRMT61B	55006	broad.mit.edu	37	chr2	29072958	29072958	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgtataagttatataagTcatagtaatagctaaaaatg	6	2	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	29072958	C	C	29072958	1	2	194	0	1	0	0	0	0	0	0	0	16695	1682	58	5		5	TRMT61B	2	29072958	3'UTR	SNP	T	TCGA-67-3771-01A-01D-1040-01	1272486	29072958	214126415	182	155767											
XDH	7498	broad.mit.edu	37	chr2	31595220	31595220	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgccaggtggggcaggGgccggcccaccatgtcctcc	15	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31595220	A	A	31595220	3	1	194	1	0	0	0	0	1	0	0	0	17553	1232	43	4	2351	4	XDH	2	31595220	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2522262	31595220	211604153	183	155768											
LTBP1	4052	broad.mit.edu	37	chr2	33172863	33172863	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggctctaggctgcaggttCaccagaagcagcagctgcag	14	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	33172863	T	T	33172863	3	4	194	1	0	0	0	0	1	0	0	0	9160	826	29	4	474	4	LTBP1	2	33172863	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1577643	33172863	210026510	184	155769											
HEATR5B	54497	broad.mit.edu	37	chr2	37299428	37299428	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtagttctagtagacactgGaattaaaaacaaaaaagtaa	7	4	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37299428	T	T	37299428	1	4	194	0	1	0	0	0	0	0	0	0	7099	1189	41	3		3	HEATR5B	2	37299428	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4126565	37299428	205899945	185	155770											
HNRPLL	92906	broad.mit.edu	37	chr2	38796436	38796436	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctggtaccatcctccagctCaaatatttgacttggaacaa	7	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	38796436	A	A	38796436	4	1	194	1	0	0	0	0	0	1	0	0	7344	835	29	3	389	3	HNRPLL	2	38796436	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1497008	38796436	204402937	186	155771											
DHX57	90957	broad.mit.edu	37	chr2	39088536	39088536	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcattaagatgagaatcaTctacacttctttctattctt	4	8	5	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	39088536	G	G	39088536	3	3	194	1	0	0	0	0	1	0	0	0	4553	1435	50	5	3224	5	DHX57	2	39088536	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	292100	39088536	204110837	187	155772											
EML4	27436	broad.mit.edu	37	chr2	42511835	42511835	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatagctggcgtggataaaGatggaagggtgagtggcata	17	3	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	42511835	C	C	42511835	3	2	194	1	0	0	0	0	1	0	0	0	5141	942	33	4	1037	4	EML4	2	42511835	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3423299	42511835	200687538	188	155773											
SLC3A1	6519	broad.mit.edu	37	chr2	44503035	44503035	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctagactggtggcaggagGggcccatgtaccagatctac	14	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	44503035	T	T	44503035	3	4	194	1	0	0	0	0	1	0	0	0	14740	1232	43	2	363	2	SLC3A1	2	44503035	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1991200	44503035	198696338	189	155774											
MSH2	4436	broad.mit.edu	37	chr2	47739384	47739384	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgtttgctgagtatcgttCttgatggaaatccccgtgga	12	7	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	47739384	G	G	47739384	1	3	194	0	1	0	0	0	0	0	0	0	9964	928	32	4		4	MSH2	2	47739384	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3236349	47739384	195459989	190	155775											
NRXN1	9378	broad.mit.edu	37	chr2	51255156	51255157	+	Frame_Shift_Del	DEL	CG	-	-													gctgagctgcaggcggccgcCgcgcgtcagaatcagctcca							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	51255157	-	-	51255156	7	5	194	1	0	1	0	1	0	0	0	0	10760	652	23	0	4742	0	NRXN1	2	51255156	Frame_Shift_Del	DEL	CG	TCGA-67-3771-01A-01D-1040-01	3515772	51255156	191944217	191	155776											
ASB3	51130	broad.mit.edu	37	chr2	54014609	54014609	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttctccccaagaccttctCtgcagactcttaccttcccc	3	18	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	54014609	G	G	54014609	1	3	194	0	1	0	0	0	0	0	0	0	1028	928	32	4		4	ASB3	2	54014609	5'Flank	SNP	C	TCGA-67-3771-01A-01D-1040-01	2759453	54014609	189184764	192	155777											
BCL11A	53335	broad.mit.edu	37	chr2	60688050	60688050	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agggatctttgagctgcctgGaggccgcgtagccggcgagc	17	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	60688050	C	C	60688050	3	2	194	1	0	0	0	0	1	0	0	0	1368	1174	41	4	620	4	BCL11A	2	60688050	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6673441	60688050	182511323	193	155778											
ANTXR1	84168	broad.mit.edu	37	chr2	69350007	69350007	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttgcgatagtttgctGtacagcttaagtttttaagc	9	7	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	69350007	C	C	69350007	1	2	194	0	1	0	0	0	0	0	0	0	711	1392	48	4		4	ANTXR1	2	69350007	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	8661957	69350007	173849366	194	155779											
CLEC4F	165530	broad.mit.edu	37	chr2	71039605	71039605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttggaggccacagatgCcagatgggctccctgggaca	13	13	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71039605	A	A	71039605	3	1	194	1	0	0	0	0	1	0	0	0	3548	739	26	3	268	3	CLEC4F	2	71039605	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1689598	71039605	172159768	195	155780											
ZNF638	27332	broad.mit.edu	37	chr2	71632796	71632796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttttgcatttaaatgcttTtgtatacttatttaattgat	5	3	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71632796	A	A	71632796	1	1	194	0	1	0	0	0	0	0	0	0	18182	1856	64	5		5	ZNF638	2	71632796	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	593191	71632796	171566577	196	155781											
DYSF	8291	broad.mit.edu	37	chr2	71883181	71883181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcttccttctctctctttAttcactctcacactgtcatg	2	15	6	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	71883181	T	T	71883181	1	4	194	0	1	0	0	0	0	0	0	0	4899	464	16	5		5	DYSF	2	71883181	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	250385	71883181	171316192	197	155782											
CCT7	10574	broad.mit.edu	37	chr2	73476790	73476790	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttttttttgctcttTcagagagggggaagggtcgc	13	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	73476790	C	C	73476790	1	2	194	0	1	0	0	0	0	0	0	0	2989	1798	62	5		5	CCT7	2	73476790	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1593609	73476790	169722583	198	155783											
INO80B	83444	broad.mit.edu	37	chr2	74682559	74682559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggagttgagcctggcgGgtgcccatggccatggagtg	17	11	0	1	rs115610738	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	74682559	T	T	74682559	3	4	194	1	0	0	0	0	1	0	0	0	7817	1232	43	2	91	2	INO80B	2	74682559	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1205769	74682559	168516814	199	155784											
HK2	3099	broad.mit.edu	37	chr2	75107651	75107651	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agactcatgccagtgcccccGtcaagatgctgcccacctac	8	17	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	75107651	A	A	75107651	3	1	194	1	0	0	0	0	1	0	0	0	7258	1145	40	4	1563	4	HK2	2	75107651	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	425092	75107651	168091722	200	155785											
REG1A	5967	broad.mit.edu	37	chr2	79349306	79349306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgagaagtaagaaggaGgttcaagttctggtctctta	13	4	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	79349306	T	T	79349306	1	4	194	0	1	0	0	0	0	0	0	0	13318	1015	35	2		2	REG1A	2	79349306	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4241655	79349306	163850067	201	155786											
CTNNA2	1496	broad.mit.edu	37	chr2	80772262	80772262	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccactccagcccttgtgCccctccttttccttctctat	3	19	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	80772262	G	G	80772262	1	3	194	0	1	0	0	0	0	0	0	0	4047	754	26	4		4	CTNNA2	2	80772262	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1422956	80772262	162427111	202	155787											
SMYD1	150572	broad.mit.edu	37	chr2	88406166	88406166	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgagtctttttatcatGgtgctccagtgttaatgacc	9	8	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	88406166	T	T	88406166	1	4	194	0	1	0	0	0	0	0	0	0	14935	1363	47	2		2	SMYD1	2	88406166	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	7633904	88406166	154793207	203	155788											
THNSL2	55258	broad.mit.edu	37	chr2	88482504	88482504	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagggtgttctggctgctctCtggctctgacagccaggtga	15	10	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	88482504	T	T	88482504	3	4	194	1	0	0	0	0	1	0	0	0	15986	913	32	4	1011	4	THNSL2	2	88482504	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	76338	88482504	154716869	204	155789											
RPIA	22934	broad.mit.edu	37	chr2	89035252	89035252	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcatcgtgatcgctgatttCaggtacagtttctggtgtct	10	8	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	89035252	G	G	89035252	3	3	194	1	0	0	0	0	1	0	0	0	13664	825	29	4	616	4	RPIA	2	89035252	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	552748	89035252	154164121	205	155790											
MRPS5	64969	broad.mit.edu	37	chr2	95756262	95756262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctgtggcagcggaggcCgtaacctagaaaaggagaaa	15	9	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	95756262	A	A	95756262	3	1	194	1	0	0	0	0	1	0	0	0	9940	652	23	1	363	1	MRPS5	2	95756262	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	6721010	95756262	147443111	206	155791											
ADRA2B	151	broad.mit.edu	37	chr2	96780506	96780506	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaagcagggtgaccccggCgccaccgcaccaaccccaca	10	18	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	96780506	A	A	96780506	1	1	194	0	1	0	0	0	0	0	0	0	338	783	27	3		3	ADRA2B	2	96780506	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	1024244	96780506	146418867	207	155792											
FER1L5	90342	broad.mit.edu	37	chr2	97368993	97368993	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccaagtggccctatttcatCcaatacaagcacttctccct	4	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	97368993	T	T	97368993	2	4	194	1	0	0	0	0	0	0	0	1	5871	845	30	4		4	FER1L5	2	97368993	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	588487	97368993	145830380	208	155793											
SLC9A4	389015	broad.mit.edu	37	chr2	103148765	103148765	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaagtcttgttctttcccCttcttgccatgatgttttcc	5	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	103148765	A	A	103148765	1	1	194	0	1	0	0	0	0	0	0	0	14830	696	24	2		2	SLC9A4	2	103148765	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	5779772	103148765	140050608	209	155794											
SLC5A7	60482	broad.mit.edu	37	chr2	108609503	108609503	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccgtttcagcaaatctatgGaaaacgcatgggcggactcc	10	12	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108609503	A	A	108609503	3	1	194	1	0	0	0	0	1	0	0	0	14784	1174	41	4	378	4	SLC5A7	2	108609503	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	5460738	108609503	134589870	210	155795											
SLC5A7	60482	broad.mit.edu	37	chr2	108624895	108624895	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttggttccttggtggttaTaatggttgttgattctgttc	11	4	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108624895	A	A	108624895	1	1	194	0	1	0	0	0	0	0	0	0	14784	1421	49	5		5	SLC5A7	2	108624895	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	15392	108624895	134574478	211	155796											
SH3RF3	344558	broad.mit.edu	37	chr2	110048969	110048969	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccgcaggtacctggcgctCtacgcctacaagccccagaa	10	17	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	110048969	G	G	110048969	2	3	194	1	0	0	0	0	0	0	0	1	14373	900	32	4		4	SH3RF3	2	110048969	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1424074	110048969	133150404	212	155797											
BUB1	699	broad.mit.edu	37	chr2	111395637	111395637	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgttgaaatactttcttCagcttttgccttaacaaatc	5	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	111395637	T	T	111395637	2	4	194	1	0	0	0	0	0	0	0	1	1580	813	29	4		4	BUB1	2	111395637	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1346668	111395637	131803736	213	155798											
TTL	150465	broad.mit.edu	37	chr2	113286318	113286318	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatttccagtgtcttcccAcccccagatgtggagcaacc	8	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113286318	T	T	113286318	2	4	194	1	0	0	0	0	0	0	0	1	16847	146	6	5		5	TTL	2	113286318	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	1890681	113286318	129913055	214	155799											
SLC20A1	6574	broad.mit.edu	37	chr2	113414856	113414856	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagaaaagtttaactactAatgttgtgtttattttttat	6	3	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	113414856	G	G	113414856	1	3	194	0	1	0	0	0	0	0	0	0	14551	377	13	5		5	SLC20A1	2	113414856	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	128538	113414856	129784517	215	155800											
IL1A	3552	broad.mit.edu	37	chr2	113539390	113539390	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgggccatagcttacaTgatagaaggatttctgtgag	14	5	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	113539390	C	C	113539390	3	2	194	1	0	0	0	0	1	0	0	0	7720	1464	51	5	721	5	IL1A	2	113539390	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	124534	113539390	129659983	216	155801											
IL1F6	27179	broad.mit.edu	37	chr2	113765398	113765398	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgctggtgtctccttcGcacccttcaggaaaaggata	9	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	113765398	A	A	113765398	1	1	194	0	1	0	0	0	0	0	0	0	7724	1102	38	4		4	IL1F6	2	113765398	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	226008	113765398	129433975	217	155802											
PSD4	23550	broad.mit.edu	37	chr2	113955199	113955199	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttactgcgagggatggttctCtacttcctgaaggtaggaaa	12	7	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113955199	T	T	113955199	2	4	194	1	0	0	0	0	0	0	0	1	12755	900	32	4		4	PSD4	2	113955199	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	189801	113955199	129244174	218	155803											
ACTR3	10096	broad.mit.edu	37	chr2	114697528	114697528	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatttggtatcttttttcccCtctctaggctgaagggtatg	9	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	114697528	G	G	114697528	1	3	194	0	1	0	0	0	0	0	0	0	212	696	24	4		4	ACTR3	2	114697528	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	742329	114697528	128501845	219	155804											
DPP10	57628	broad.mit.edu	37	chr2	116548969	116548969	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaaaataaaggaatctAaagattttatatttttgtgt	5	1	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	116548969	G	G	116548969	1	3	194	0	1	0	0	0	0	0	0	0	4767	377	13	5		5	DPP10	2	116548969	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1851441	116548969	126650404	220	155805											
DDX18	8886	broad.mit.edu	37	chr2	118579310	118579310	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactcattgttaagttaagGttcatgcccaggaatggtaa	10	6	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	118579310	A	A	118579310	2	1	194	1	0	0	0	0	0	0	0	1	4378	1252	44	4		4	DDX18	2	118579310	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	2030341	118579310	124620063	221	155806											
CCDC93	54520	broad.mit.edu	37	chr2	118764241	118764241	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacttctggcacacagtagAcactcaaaagttagttccct	6	12	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	118764241	G	G	118764241	1	3	194	0	1	0	0	0	0	0	0	0	2900	290	10	5		5	CCDC93	2	118764241	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	184931	118764241	124435132	222	155807											
PTPN4	5775	broad.mit.edu	37	chr2	120712936	120712936	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatattaaaagcattttgctGatatttgctaactagtttca	5	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	120712936	C	C	120712936	1	2	194	0	1	0	0	0	0	0	0	0	12898	1305	45	4		4	PTPN4	2	120712936	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1948695	120712936	122486437	223	155808											
GLI2	2736	broad.mit.edu	37	chr2	121747078	121747078	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctacaggctagccctggGggcctggacagcacgcagcc	15	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	121747078	T	T	121747078	2	4	194	1	0	0	0	0	0	0	0	1	6502	1219	43	2		2	GLI2	2	121747078	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	1034142	121747078	121452295	224	155809											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671587	125671587	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctttctctcctacgcattcCcctcatctggagggaatcca	7	15	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	125671587	G	G	125671587	1	3	194	0	1	0	0	0	0	0	0	0	3682	638	22	4		4	CNTNAP5	2	125671587	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3924509	125671587	117527786	225	155810											
GYPC	2995	broad.mit.edu	37	chr2	127447982	127447982	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttaagcagccagggttggggGacttggtgaaaacatccagg	15	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	127447982	T	T	127447982	1	4	194	0	1	0	0	0	0	0	0	0	6975	1189	41	3		3	GYPC	2	127447982	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1776395	127447982	115751391	226	155811											
BIN1	274	broad.mit.edu	37	chr2	127816807	127816807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaggggcaaatgtattgaCgtctgtgtgaagaggtgtgt	17	4	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	127816807	A	A	127816807	1	1	194	0	1	0	0	0	0	0	0	0	1438	551	19	3		3	BIN1	2	127816807	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	368825	127816807	115382566	227	155812											
WDR33	55339	broad.mit.edu	37	chr2	128471546	128471546	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgccgctctgctcatgccgCctctctgacatcgggcccat	9	19	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	128471546	T	T	128471546	2	4	194	1	0	0	0	0	0	0	0	1	17414	738	26	4		4	WDR33	2	128471546	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	654739	128471546	114727827	228	155813											
CCDC74B	91409	broad.mit.edu	37	chr2	130899923	130899923	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagcgcccaagggagcagaGgccctggaaaggtggtttcc	16	11	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	130899923	A	A	130899923	2	1	194	1	0	0	0	0	0	0	0	1	2876	987	35	4		4	CCDC74B	2	130899923	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	2428377	130899923	112299450	229	155814											
PLEKHB2	55041	broad.mit.edu	37	chr2	132110013	132110013	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggccgccaccaccagggAgtcccacataggtaccaggt	13	14	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	132110013	T	T	132110013	1	4	194	0	1	0	0	0	0	0	0	0	12160	319	11	5		5	PLEKHB2	2	132110013	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1210090	132110013	111089360	230	155815											
CCDC74A	90557	broad.mit.edu	37	chr2	132290040	132290040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagagcaccctgctcagtGggagaggggaaccaggccct	14	14	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	132290040	T	T	132290040	1	4	194	0	1	0	0	0	0	0	0	0	2875	1363	47	2		2	CCDC74A	2	132290040	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	180027	132290040	110909333	231	155816											
GPR39	2863	broad.mit.edu	37	chr2	133403100	133403100	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagtcccagtcattgagtcTcgagtcactagagcccaact	8	12	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	133403100	A	A	133403100	3	1	194	1	0	0	0	0	1	0	0	0	6758	1551	54	5	1289	5	GPR39	2	133403100	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1113060	133403100	109796273	232	155817											
CXCR4	7852	broad.mit.edu	37	chr2	136872465	136872465	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagtgaaaacttgaagactCagactcagtggaaacagatg	12	6	2	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	136872465	G	G	136872465	3	3	194	1	0	0	0	0	1	0	0	0	4126	835	29	4	29	4	CXCR4	2	136872465	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3469365	136872465	106326908	233	155818											
EPC2	26122	broad.mit.edu	37	chr2	149402778	149402778	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attacccccccttccctcctCccccctcccctttgtcagtc	2	24	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	149402778	A	A	149402778	1	1	194	0	1	0	0	0	0	0	0	0	5203	870	30	3		3	EPC2	2	149402778	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	12530313	149402778	93796595	234	155819											
TNFAIP6	7130	broad.mit.edu	37	chr2	152226434	152226434	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atactaagacatttaacattTcataaaaagtaatagattgc	4	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	152226434	G	G	152226434	1	3	194	0	1	0	0	0	0	0	0	0	16398	1798	62	5		5	TNFAIP6	2	152226434	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	2823656	152226434	90972939	235	155820											
TNFAIP6	7130	broad.mit.edu	37	chr2	152226512	152226512	+	Intron	SNP	G	C	C													taatgctttggggtttttacGttttttttcttctcatttca					rs56801020	byFrequency;by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	152226512	C	C	152226512	1	2	194	0	1	0	0	0	0	0	0	0	16398	1160	40	4		4	TNFAIP6	2	152226512	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	78	152226512	90972861	236	155821	667	2									
TNFAIP6	7130	broad.mit.edu	37	chr2	152226521	152226521	+	Intron	SNP	C	T	T													ggggtttttacgttttttttCttctcatttcagcaaaggag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	152226521	T	T	152226521	1	4	194	0	1	0	0	0	0	0	0	0	16398	928	32	4		4	TNFAIP6	2	152226521	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	9	152226521	90972852	237	155822	667	2									
NEB	4703	broad.mit.edu	37	chr2	152432198	152432198	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaaaagagagtctgttGtagtacttacattgctcaca	7	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	152432198	A	A	152432198	1	1	194	0	1	0	0	0	0	0	0	0	10397	1392	48	4		4	NEB	2	152432198	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	205677	152432198	90767175	238	155823											
STAM2	10254	broad.mit.edu	37	chr2	152988769	152988769	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacaatatagcaccaatatAcaacactatgcataatacac	2	10	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	152988769	G	G	152988769	1	3	194	0	1	0	0	0	0	0	0	0	15367	406	14	5		5	STAM2	2	152988769	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	556571	152988769	90210604	239	155824											
TTC21B	79809	broad.mit.edu	37	chr2	166756187	166756187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaaagccaacgtgagcCatgcctcatcatctagtagt	7	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	166756187	A	A	166756187	1	1	194	0	1	0	0	0	0	0	0	0	16814	609	21	2		2	TTC21B	2	166756187	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	13767418	166756187	76443186	240	155825											
SCN1A	6323	broad.mit.edu	37	chr2	166930006	166930006	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggccattttcgtcgtcatcTtttttgtctggtttgggatt	11	7	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	166930006	A	A	166930006	3	1	194	1	0	0	0	0	1	0	0	0	14027	1606	56	5	6007	5	SCN1A	2	166930006	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	173819	166930006	76269367	241	155826											
XIRP2	129446	broad.mit.edu	37	chr2	168106754	168106754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggaattcttgagaaaacGtgaagaactgcaacagattt	10	5	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	168106754	T	T	168106754	3	4	194	1	0	0	0	0	1	0	0	0	17557	1145	40	3	8882	3	XIRP2	2	168106754	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1176748	168106754	75092619	242	155827											
LRP2	4036	broad.mit.edu	37	chr2	170002221	170002221	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaataagatttccaagTaatgaggagcatcttatacc	7	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	170002221	A	A	170002221	1	1	194	0	1	0	0	0	0	0	0	0	9043	1653	57	5		5	LRP2	2	170002221	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1895467	170002221	73197152	243	155828											
LRP2	4036	broad.mit.edu	37	chr2	170112651	170112651	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccaaacggatgtgtcatcTgctctatatggcccagtctt	9	11	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	170112651	A	A	170112651	3	1	194	1	0	0	0	0	1	0	0	0	9043	1580	55	5	11476	5	LRP2	2	170112651	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	110430	170112651	73086722	244	155829											
UBR3	130507	broad.mit.edu	37	chr2	170937267	170937267	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccaatatgctattcctggCtttgtaattacaattttttt	4	7	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	170937267	T	T	170937267	1	4	194	0	1	0	0	0	0	0	0	0	17029	812	28	4		4	UBR3	2	170937267	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	824616	170937267	72262106	245	155830											
MYO3B	140469	broad.mit.edu	37	chr2	171225958	171225958	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtcatgtgttttgatttgCccagcattattactggtagt	9	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	171225958	G	G	171225958	1	3	194	0	1	0	0	0	0	0	0	0	10171	754	26	4		4	MYO3B	2	171225958	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	288691	171225958	71973415	246	155831											
GAD1	2571	broad.mit.edu	37	chr2	171715359	171715359	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtatattccacaaagcctcAggggtgtgccagacagccct	11	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	171715359	T	T	171715359	3	4	194	1	0	0	0	0	1	0	0	0	6239	179	7	5	1666	5	GAD1	2	171715359	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	489401	171715359	71484014	247	155832											
ZAK	51776	broad.mit.edu	37	chr2	174047508	174047508	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctttaatgtattttctcAatgaaaatataaagtcttat	3	4	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	174047508	G	G	174047508	1	3	194	0	1	0	0	0	0	0	0	0	17639	145	5	5		5	ZAK	2	174047508	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	2332149	174047508	69151865	248	155833											
SCRN3	79634	broad.mit.edu	37	chr2	175260500	175260500	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgatgcctccactggccActcctccctccgtccacctg	6	20	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	175260500	T	T	175260500	1	4	194	0	1	0	0	0	0	0	0	0	14053	174	6	5		5	SCRN3	2	175260500	5'UTR	SNP	A	TCGA-67-3771-01A-01D-1040-01	1212992	175260500	67938873	249	155834											
WIPF1	7456	broad.mit.edu	37	chr2	175432512	175432512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaagaaattaaacgcaaaCaagcaaaccacatatacaaa	3	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	175432512	A	A	175432512	1	1	194	0	1	0	0	0	0	0	0	0	17494	493	17	3		3	WIPF1	2	175432512	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	172012	175432512	67766861	250	155835											
CHRNA1	1134	broad.mit.edu	37	chr2	175614714	175614714	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatgggtgctgggtgagCggtggtgtgtgttgatgacg	20	4	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	175614714	A	A	175614714	3	1	194	1	0	0	0	0	1	0	0	0	3412	768	27	3	423	3	CHRNA1	2	175614714	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	182202	175614714	67584659	251	155836											
OSBPL6	114880	broad.mit.edu	37	chr2	179209051	179209051	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagttcagcacaactcgGcgccggcagaggctagcggc	15	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	179209051	A	A	179209051	1	1	194	0	1	0	0	0	0	0	0	0	11375	1190	42	4		4	OSBPL6	2	179209051	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3594337	179209051	63990322	252	155837											
TTN	7273	broad.mit.edu	37	chr2	179396241	179396241	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcataggtggtataatccCctcctgtcacgtccaacgtt	8	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	179396241	T	T	179396241	3	4	194	1	0	0	0	0	1	0	0	0	16861	623	22	4	2898	4	TTN	2	179396241	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	187190	179396241	63803132	253	155838											
TTN	7273	broad.mit.edu	37	chr2	179489967	179489967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcatgagcctctgcctTatacatgtttttaaaataag	6	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	179489967	C	C	179489967	1	2	194	0	1	0	0	0	0	0	0	0	16861	1769	61	5		5	TTN	2	179489967	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	93726	179489967	63709406	254	155839											
TTN	7273	broad.mit.edu	37	chr2	179516838	179516838	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaccttcagggggaggacTttccggtttgggaggaatag	15	6	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	179516838	A	A	179516838	3	1	194	1	0	0	0	0	1	0	0	0	16861	1609	56	5	68627	5	TTN	2	179516838	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	26871	179516838	63682535	255	155840											
TTN	7273	broad.mit.edu	37	chr2	179596652	179596652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacatgacatcgtactcCtttaagacttcaattggctt	6	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	179596652	A	A	179596652	3	1	194	1	0	0	0	0	1	0	0	0	16861	680	24	2	87799	2	TTN	2	179596652	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	79814	179596652	63602721	256	155841											
TTN	7273	broad.mit.edu	37	chr2	179599169	179599169	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatctccagacacacaagagActtctgagaaaacaatctgt	7	10	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	179599169	T	T	179599169	3	4	194	1	0	0	0	0	1	0	0	0	16861	275	10	5	89391	5	TTN	2	179599169	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	2517	179599169	63600204	257	155842											
TTN	7273	broad.mit.edu	37	chr2	179641721	179641721	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcagtataccaggcagaatCttggctgacagtggaatcga	12	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	179641721	A	A	179641721	3	1	194	1	0	0	0	0	1	0	0	0	16861	913	32	3	106458	3	TTN	2	179641721	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	42552	179641721	63557652	258	155843											
CCDC141	285025	broad.mit.edu	37	chr2	179730380	179730380	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagaagaaagtctcctgattCattgtgtgtttgcatgtgtg	12	5	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	179730380	T	T	179730380	1	4	194	0	1	0	0	0	0	0	0	0	2801	841	29	4		4	CCDC141	2	179730380	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	88659	179730380	63468993	259	155844											
SESTD1	91404	broad.mit.edu	37	chr2	179982198	179982198	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtacacttttgtttgtaGttagataaaatcaatcttct	5	5	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	179982198	C	C	179982198	1	2	194	0	1	0	0	0	0	0	0	0	14240	1044	36	4		4	SESTD1	2	179982198	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	251818	179982198	63217175	260	155845											
DNAJC10	54431	broad.mit.edu	37	chr2	183608469	183608469	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaatgataaaaaaaaActtagcttcattttcaaata	3	4	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	183608469	T	T	183608469	1	4	194	0	1	0	0	0	0	0	0	0	4669	58	2	5		5	DNAJC10	2	183608469	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	3626271	183608469	59590904	261	155846											
NCKAP1	10787	broad.mit.edu	37	chr2	183850996	183850996	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaacgttagtttaatttgatCaataactgtcaaaatgagta	7	4	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	183850996	A	A	183850996	1	1	194	0	1	0	0	0	0	0	0	0	10316	841	29	3		3	NCKAP1	2	183850996	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	242527	183850996	59348377	262	155847											
ZNF804A	91752	broad.mit.edu	37	chr2	185801543	185801543	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaaagtaaataataatctaGataaaaataagccagactta	4	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	185801543	C	C	185801543	3	2	194	1	0	0	0	0	1	0	0	0	18299	942	33	4	1434	4	ZNF804A	2	185801543	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1950547	185801543	57397830	263	155848											
COL3A1	1281	broad.mit.edu	37	chr2	189859246	189859246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcctccctgtgtttcaacCaagactttgttatactttag	5	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	189859246	A	A	189859246	1	1	194	0	1	0	0	0	0	0	0	0	3720	609	21	2		2	COL3A1	2	189859246	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4057703	189859246	53340127	264	155849											
COL3A1	1281	broad.mit.edu	37	chr2	189870875	189870875	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgctgagaatgcatggatGaaatggcatttggaaggttt	13	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	189870875	A	A	189870875	1	1	194	0	1	0	0	0	0	0	0	0	3720	1305	45	4		4	COL3A1	2	189870875	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	11629	189870875	53328498	265	155850											
COL5A2	1290	broad.mit.edu	37	chr2	189929691	189929691	+	Intron	DEL	C	-	-													aaatggcatcttctggagcaCcccccacgtaagtatcaaca							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	189929691	-	-	189929691	6	5	194	0	1	1	0	1	0	0	0	0	3729	522	18	0		0	COL5A2	2	189929691	Intron	DEL	C	TCGA-67-3771-01A-01D-1040-01	58816	189929691	53269682	266	155851											
MYO1B	4430	broad.mit.edu	37	chr2	192280722	192280722	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattattgtttaccttgggaGaatggattccaggatctgat	10	6	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	192280722	A	A	192280722	1	1	194	0	1	0	0	0	0	0	0	0	10163	957	33	4		4	MYO1B	2	192280722	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2351031	192280722	50918651	267	155852											
HECW2	57520	broad.mit.edu	37	chr2	197118639	197118639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtgagcagcaggtggaCtcacctggcgagttctgagg	15	10	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	197118639	A	A	197118639	1	1	194	0	1	0	0	0	0	0	0	0	7110	580	20	3		3	HECW2	2	197118639	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4837917	197118639	46080734	268	155853											
ANKRD44	91526	broad.mit.edu	37	chr2	198051794	198051794	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgagcatccggatctcctCtggatcaccgctgaagattg	11	11	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	198051794	G	G	198051794	3	3	194	1	0	0	0	0	1	0	0	0	672	928	32	4		4	ANKRD44	2	198051794	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	933155	198051794	45147579	269	155854											
MOBKL3	25843	broad.mit.edu	37	chr2	198400314	198400314	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaaattcttgaaccacctGaaggccaagatgaaggtgtg	10	8	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	198400314	A	A	198400314	3	1	194	1	0	0	0	0	1	0	0	0	9781	1291	45	4	194	4	MOBKL3	2	198400314	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	348520	198400314	44799059	270	155855											
PLCL1	5334	broad.mit.edu	37	chr2	198953721	198953721	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatgaaagacagctttcCttacctggagcctctgggtg	12	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	198953721	T	T	198953721	3	4	194	1	0	0	0	0	1	0	0	0	12134	681	24	4	2865	4	PLCL1	2	198953721	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	553407	198953721	44245652	271	155856											
ALS2CR12	130540	broad.mit.edu	37	chr2	202206971	202206971	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtgtcttgttcatctcccCcacccttcatcccccaactc	3	20	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	202206971	T	T	202206971	1	4	194	0	1	0	0	0	0	0	0	0	553	638	22	4		4	ALS2CR12	2	202206971	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3253250	202206971	40992402	272	155857											
ALS2CR12	130540	broad.mit.edu	37	chr2	202207129	202207129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctgtttcatctcagcaCagcggagatccatttcactg	8	11	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	202207129	A	A	202207129	3	1	194	1	0	0	0	0	1	0	0	0	553	478	17	3	885	3	ALS2CR12	2	202207129	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	158	202207129	40992244	273	155858											
ALS2	57679	broad.mit.edu	37	chr2	202633663	202633663	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttctttacagaaagtctatCaagacctaaacagtacaagt	5	9	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	202633663	G	G	202633663	1	3	194	0	1	0	0	0	0	0	0	0	550	841	29	4		4	ALS2	2	202633663	5'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	426534	202633663	40565710	274	155859											
PIKFYVE	200576	broad.mit.edu	37	chr2	209218694	209218694	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagagagttgtgatgtgGtcctgctagatgaaaatctc	12	5	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	209218694	T	T	209218694	3	4	194	1	0	0	0	0	1	0	0	0	12019	1261	44	3	6082	3	PIKFYVE	2	209218694	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6585031	209218694	33980679	275	155860											
MAP2	4133	broad.mit.edu	37	chr2	210588470	210588470	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggagccacctgcacagccAgcaccctgccttctttccca	8	18	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	210588470	T	T	210588470	1	4	194	0	1	0	0	0	0	0	0	0	9327	203	7	5		5	MAP2	2	210588470	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1369776	210588470	32610903	276	155861											
RPE	6120	broad.mit.edu	37	chr2	210867290	210867290	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaatccggaagcctgtaCggagaaggggcggggccaaa	17	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	210867290	A	A	210867290	1	1	194	0	1	0	0	0	0	0	0	0	13655	551	19	3		3	RPE	2	210867290	5'Flank	SNP	C	TCGA-67-3771-01A-01D-1040-01	278820	210867290	32332083	277	155862											
ACADL	33	broad.mit.edu	37	chr2	211085209	211085209	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaattcatttaaaaagctCtaagaatcctgggatcttat	5	6	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	211085209	A	A	211085209	1	1	194	0	1	0	0	0	0	0	0	0	112	928	32	3		3	ACADL	2	211085209	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	217919	211085209	32114164	278	155863											
IKZF2	22807	broad.mit.edu	37	chr2	213878499	213878499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgcaaagaaacaaaagCatttgtaatgcttacccaca	5	10	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	213878499	A	A	213878499	1	1	194	0	1	0	0	0	0	0	0	0	7685	725	25	3		3	IKZF2	2	213878499	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2793290	213878499	29320874	279	155864											
VWC2L	402117	broad.mit.edu	37	chr2	215279129	215279129	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacgatttttccctgggcAttccaactgtccatgtgtct	8	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	215279129	G	G	215279129	3	3	194	1	0	0	0	0	1	0	0	0	17371	217	8	5	214	5	VWC2L	2	215279129	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	1400630	215279129	27920244	280	155865											
ABCA12	26154	broad.mit.edu	37	chr2	215840444	215840444	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagatctcatggccttcattCaggtacaaccacactcctgg	7	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	215840444	T	T	215840444	1	4	194	0	1	0	0	0	0	0	0	0	30	841	29	4		4	ABCA12	2	215840444	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	561315	215840444	27358929	281	155866											
MARCH4	57574	broad.mit.edu	37	chr2	217234937	217234937	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagcagtaccagccggagCagcagcaccaccaccaccag	9	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	217234937	T	T	217234937	3	4	194	1	0	0	0	0	1	0	0	0	9395	710	25	4	1201	4	MARCH4	2	217234937	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1394493	217234937	25964436	282	155867											
TNS1	7145	broad.mit.edu	37	chr2	218713785	218713785	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatacaggctcccatctagTggcccctgcgtgtgtcccac	10	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	218713785	A	A	218713785	2	1	194	1	0	0	0	0	0	0	0	1	16466	1683	59	5		5	TNS1	2	218713785	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	1478848	218713785	24485588	283	155868											
CXCR2	3579	broad.mit.edu	37	chr2	219000386	219000386	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatccaggagacctgtgagCgccgcaatcacatcgaccgg	12	13	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	219000386	A	A	219000386	3	1	194	1	0	0	0	0	1	0	0	0	4124	768	27	3	864	3	CXCR2	2	219000386	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	286601	219000386	24198987	284	155869											
ZNF142	7701	broad.mit.edu	37	chr2	219507065	219507065	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctttaccaggcccacccGctcccgggcagcaaagtcac	10	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	219507065	A	A	219507065	3	1	194	1	0	0	0	0	1	0	0	0	17857	1086	38	4	901	4	ZNF142	2	219507065	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	506679	219507065	23692308	285	155870											
PRKAG3	53632	broad.mit.edu	37	chr2	219693170	219693170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggtatatcagagatcaGccccagaacaaccgtacaag	9	10	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	219693170	T	T	219693170	1	4	194	0	1	0	0	0	0	0	0	0	12608	986	34	3		3	PRKAG3	2	219693170	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	186105	219693170	23506203	286	155871											
IHH	3549	broad.mit.edu	37	chr2	219920102	219920102	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggccaactgagccaggtGgtggtcagccacggccgcga	16	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	219920102	A	A	219920102	3	1	194	1	0	0	0	0	1	0	0	0	7677	1348	47	4	176	4	IHH	2	219920102	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	226932	219920102	23279271	287	155872											
NHEJ1	79840	broad.mit.edu	37	chr2	219942919	219942919	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcaccaatgctgcatgcctCtggcagtttctgtaagagag	10	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	219942919	T	T	219942919	3	4	194	1	0	0	0	0	1	0	0	0	10497	922	32	4	313	4	NHEJ1	2	219942919	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	22817	219942919	23256454	288	155873											
C2orf24	27013	broad.mit.edu	37	chr2	220039039	220039039	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatggctaatgcatatttgGcacttaccatgtgccagata	8	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	220039039	A	A	220039039	1	1	194	0	1	0	0	0	0	0	0	0	2181	1218	42	4		4	C2orf24	2	220039039	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	96120	220039039	23160334	289	155874											
ANKZF1	55139	broad.mit.edu	37	chr2	220097894	220097894	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcagctgggcactttGctggtgctatatttcaaggg	14	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	220097894	C	C	220097894	3	2	194	1	0	0	0	0	1	0	0	0	693	1319	46	4	670	4	ANKZF1	2	220097894	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	58855	220097894	23101479	290	155875											
PTPRN	5798	broad.mit.edu	37	chr2	220164233	220164233	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggggatgccctacaggggCatcttaggcaaggaagatgc	15	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	220164233	T	T	220164233	1	4	194	0	1	0	0	0	0	0	0	0	12915	725	25	4		4	PTPRN	2	220164233	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	66339	220164233	23035140	291	155876											
ACCN4	55515	broad.mit.edu	37	chr2	220397707	220397707	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctccatcagcctcttcatGtctctgtccactcttctcct	3	18	7	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	220397707	C	C	220397707	1	2	194	0	1	0	0	0	0	0	0	0	131	1392	48	4		4	ACCN4	2	220397707	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	233474	220397707	22801666	292	155877											
KIAA1486	57624	broad.mit.edu	37	chr2	226273676	226273676	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagtacattgaggatatggGgatgaaggcctatgatggct	14	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	226273676	C	C	226273676	3	2	194	1	0	0	0	0	1	0	0	0	8307	1232	43	4	82	4	KIAA1486	2	226273676	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	5875969	226273676	16925697	293	155878											
C2orf83	56918	broad.mit.edu	37	chr2	228497784	228497784	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagggattaattccaaacgtCagggcatagtcttccatgct	9	9	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	228497784	A	A	228497784	2	1	194	1	0	0	0	0	0	0	0	1	2220	813	29	3		3	C2orf83	2	228497784	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2224108	228497784	14701589	294	155879											
SLC19A3	80704	broad.mit.edu	37	chr2	228552717	228552717	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaatgttgtcctagttgCaattattgctcaaaacctac	6	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	228552717	G	G	228552717	1	3	194	0	1	0	0	0	0	0	0	0	14543	725	25	4		4	SLC19A3	2	228552717	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	54933	228552717	14646656	295	155880											
PID1	55022	broad.mit.edu	37	chr2	230020567	230020567	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagtccttgtcttcatcagCggtgtggtcgtgcacagctc	12	11	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	230020567	G	G	230020567	2	3	194	1	0	0	0	0	0	0	0	1	11977	755	27	4		4	PID1	2	230020567	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1467850	230020567	13178806	296	155881											
SP140	11262	broad.mit.edu	37	chr2	231112596	231112596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaattatatggaaattaCatacactctcagagatgcct	7	7	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	231112596	A	A	231112596	1	1	194	0	1	0	0	0	0	0	0	0	15076	493	17	3		3	SP140	2	231112596	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1092029	231112596	12086777	297	155882											
DIS3L2	129563	broad.mit.edu	37	chr2	232894773	232894773	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtggtcgtgaaactgcttCccgaggagcattggaaggtg	16	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	232894773	T	T	232894773	3	4	194	1	0	0	0	0	1	0	0	0	4577	855	30	4	363	4	DIS3L2	2	232894773	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1782177	232894773	10304600	298	155883											
ALPP	250	broad.mit.edu	37	chr2	233244133	233244133	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggggctccagtaaggagtTagaggcagttggaatcccag	15	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	233244133	C	C	233244133	1	2	194	0	1	0	0	0	0	0	0	0	548	1769	61	5		5	ALPP	2	233244133	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	349360	233244133	9955240	299	155884											
SH3BP4	23677	broad.mit.edu	37	chr2	235949751	235949751	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctatgtgcagcccttgaActaccggaactcaacactga	7	14	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	235949751	G	G	235949751	3	3	194	1	0	0	0	0	1	0	0	0	14359	43	2	5	344	5	SH3BP4	2	235949751	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	2705618	235949751	7249622	300	155885											
ASB18	401036	broad.mit.edu	37	chr2	237149792	237149792	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttactgcgagcaaacttcatCagatgtccttttcttgtgta	7	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	237149792	G	G	237149792	1	3	194	0	1	0	0	0	0	0	0	0	1026	841	29	4		4	ASB18	2	237149792	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1200041	237149792	6049581	301	155886											
LRRFIP1	9208	broad.mit.edu	37	chr2	238664710	238664710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaacatgggattccactGctttagtgctgtttttctcc	8	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	238664710	T	T	238664710	1	4	194	0	1	0	0	0	0	0	0	0	9114	1334	46	3		3	LRRFIP1	2	238664710	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1514918	238664710	4534663	302	155887											
SCLY	51540	broad.mit.edu	37	chr2	239006934	239006934	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccgcagcaccaccagggccGaggtggacctcgtcgtgcag	15	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	239006934	C	C	239006934	3	2	194	1	0	0	0	0	1	0	0	0	14020	1059	37	4	1322	4	SCLY	2	239006934	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	342224	239006934	4192439	303	155888											
KLHL30	377007	broad.mit.edu	37	chr2	239059471	239059471	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgcagtcacagcacaGcctgcatgagaatggcgcgc	13	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	239059471	A	A	239059471	3	1	194	1	0	0	0	0	1	0	0	0	8455	971	34	4	1528	4	KLHL30	2	239059471	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	52537	239059471	4139902	304	155889											
ILKAP	80895	broad.mit.edu	37	chr2	239082405	239082405	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgaaagatacagactgtGgaattcacattattaaccac	8	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	239082405	A	A	239082405	1	1	194	0	1	0	0	0	0	0	0	0	7784	1363	47	4		4	ILKAP	2	239082405	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	22934	239082405	4116968	305	155890											
ANKMY1	51281	broad.mit.edu	37	chr2	241439489	241439489	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttccgcgccaggaacgtctCgcgctctgctggcatcagcg	12	16	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	241439489	A	A	241439489	4	1	194	1	0	0	0	0	0	1	0	0	634	893	31	3	416	3	ANKMY1	2	241439489	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2357084	241439489	1759884	306	155891											
DUSP28	285193	broad.mit.edu	37	chr2	241500167	241500167	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctccaccgttggtgcgcgtCgcgccctcactcttcctcgg	10	19	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	241500167	G	G	241500167	2	3	194	1	0	0	0	0	0	0	0	1	4865	871	31	4		4	DUSP28	2	241500167	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	60678	241500167	1699206	307	155892											
PPP1R7	5510	broad.mit.edu	37	chr2	242102981	242102981	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agactttatacacacatgtgCcaagcaaaaacttgattctc	5	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	242102981	G	G	242102981	1	3	194	0	1	0	0	0	0	0	0	0	12477	754	26	4		4	PPP1R7	2	242102981	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	602814	242102981	1096392	308	155893											
SRGAP3	9901	broad.mit.edu	37	chr3	9100069	9100069	+	Frame_Shift_Del	DEL	C	-	-													ctcaatgacatccagcccttCgtggcgagaggtctccaggt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	9100069	-	-	9100069	7	5	194	1	0	1	0	1	0	0	0	0	15265	893	31	0	2509	0	SRGAP3	3	9100069	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01		9100069	188922361	309	155894											
SLC6A11	6538	broad.mit.edu	37	chr3	10967706	10967706	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggccccggcctggccttTattgcgtaccccaaggcggt	12	16	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	10967706	C	C	10967706	2	2	194	1	0	0	0	0	0	0	0	1	14788	1751	61	5		5	SLC6A11	3	10967706	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	1867637	10967706	187054724	310	155895											
MKRN2	23609	broad.mit.edu	37	chr3	12623348	12623349	+	Frame_Shift_Ins	INS	-	C	C													gagcaaggcaaggggacctgINScccatttggaagcaaatgtc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	12623349	C	C	12623348	7	5	194	1	0	1	1	0	0	0	0	0	9700	1319	46	0	1036	0	MKRN2	3	12623348	Frame_Shift_Ins	INS	-	TCGA-67-3771-01A-01D-1040-01	1655642	12623348	185399082	311	155896											
SLC6A6	6533	broad.mit.edu	37	chr3	14518662	14518662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctccgagcagcaggcaaGggtggcctgagcgtcagccg	15	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	14518662	T	T	14518662	1	4	194	0	1	0	0	0	0	0	0	0	14802	1015	35	2		2	SLC6A6	3	14518662	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1895314	14518662	183503768	312	155897											
COLQ	8292	broad.mit.edu	37	chr3	15495391	15495391	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcagagccgtcacagtcctCcacaccctcatgccggtgac	9	17	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	15495391	T	T	15495391	3	4	194	1	0	0	0	0	1	0	0	0	3745	864	30	4	132	4	COLQ	3	15495391	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	976729	15495391	182527039	313	155898											
GALNTL2	117248	broad.mit.edu	37	chr3	16249873	16249873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtattttacacttactcCacacctgatttggataaacc	6	10	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	16249873	A	A	16249873	1	1	194	0	1	0	0	0	0	0	0	0	6284	609	21	2		2	GALNTL2	3	16249873	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	754482	16249873	181772557	314	155899											
ARPP21	10777	broad.mit.edu	37	chr3	35785901	35785901	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acaatccagcgtgtctcggtGgaactctgactccatggttc	10	12	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	35785901	C	C	35785901	1	2	194	0	1	0	0	0	0	0	0	0	982	1363	47	4		4	ARPP21	3	35785901	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	19536028	35785901	162236529	315	155900											
SCN5A	6331	broad.mit.edu	37	chr3	38671749	38671749	+	Intron	DEL	C	-	-													tgggggcagcacgtgcacatCcccagcgtgggcccccaggg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	38671749	-	-	38671749	6	5	194	0	1	1	0	1	0	0	0	0	14035	870	30	0		0	SCN5A	3	38671749	Intron	DEL	C	TCGA-67-3771-01A-01D-1040-01	2885848	38671749	159350681	316	155901											
TTC21A	199223	broad.mit.edu	37	chr3	39161449	39161449	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatctgattaaggcactaGagacaagggaacccgaaaat	10	7	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	39161449	T	T	39161449	4	4	194	1	0	0	0	0	0	1	0	0	16813	943	33	3	892	3	TTC21A	3	39161449	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	489700	39161449	158860981	317	155902											
CTNNB1	1499	broad.mit.edu	37	chr3	41266113	41266113	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctggactctggaatccattCtggtgccactaccacagctc	8	15	2	0	rs121913403		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	41266113	G	G	41266113	3	3	194	1	0	0	0	0	1	0	0	0	4050	913	32	4	116	4	CTNNB1	3	41266113	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2104664	41266113	156756317	318	155903											
SLC6A20	54716	broad.mit.edu	37	chr3	45807300	45807300	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttattcacgcactcagtActaagcaacatgggggacct	9	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	45807300	T	T	45807300	1	4	194	0	1	0	0	0	0	0	0	0	14798	406	14	5		5	SLC6A20	3	45807300	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	4541187	45807300	152215130	319	155904											
TDGF1	6997	broad.mit.edu	37	chr3	46620584	46620584	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgacttcctcttcctaGtgtgatttggatcatggcca	9	10	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	46620584	C	C	46620584	5	2	194	1	0	0	0	0	0	0	1	0	15848	1043	36	4	41	4	TDGF1	3	46620584	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	813284	46620584	151401846	320	155905											
NBEAL2	23218	broad.mit.edu	37	chr3	47038418	47038418	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcctccctctgaccctggCtgcctgcccattcccctatc	5	22	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	47038418	G	G	47038418	1	3	194	0	1	0	0	0	0	0	0	0	10283	812	28	4		4	NBEAL2	3	47038418	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	417834	47038418	150984012	321	155906											
SLC25A20	788	broad.mit.edu	37	chr3	48897108	48897108	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtacataaactcttcgcCaggcatggtggtacacacct	8	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	48897108	A	A	48897108	1	1	194	0	1	0	0	0	0	0	0	0	14597	609	21	2		2	SLC25A20	3	48897108	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1858690	48897108	149125322	322	155907											
APEH	327	broad.mit.edu	37	chr3	49716255	49716255	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctccctacctccactcctgGatgcagcctcagccctccta	5	21	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	49716255	C	C	49716255	1	2	194	0	1	0	0	0	0	0	0	0	770	1189	41	4		4	APEH	3	49716255	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	819147	49716255	148306175	323	155908											
CAMKV	79012	broad.mit.edu	37	chr3	49897671	49897671	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catccttgatgttcttatcaGaagcagcattgccagaaatc	7	10	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	49897671	C	C	49897671	3	2	194	1	0	0	0	0	1	0	0	0	2634	942	33	4	638	4	CAMKV	3	49897671	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	181416	49897671	148124759	324	155909											
DOCK3	1795	broad.mit.edu	37	chr3	51392312	51392312	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgctcttctgtttgtggcaGaacaaagaatacgtgtgccg	12	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	51392312	A	A	51392312	5	1	194	1	0	0	0	0	0	0	1	0	4728	956	33	4	4269	4	DOCK3	3	51392312	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	1494641	51392312	146630118	325	155910											
TLR9	54106	broad.mit.edu	37	chr3	52257047	52257047	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtcagctccgaagctcCgctgatgcggttgtccgaca	13	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52257047	A	A	52257047	4	1	194	1	0	0	0	0	0	1	0	0	16081	661	23	1	1817	1	TLR9	3	52257047	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	864735	52257047	145765383	326	155911											
GLYCTK	132158	broad.mit.edu	37	chr3	52324415	52324415	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgagcccccttgcatccactCctctggcggggctcagtggc	12	17	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	52324415	G	G	52324415	2	3	194	1	0	0	0	0	0	0	0	1	6546	842	30	4		4	GLYCTK	3	52324415	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	67368	52324415	145698015	327	155912											
DNAH1	25981	broad.mit.edu	37	chr3	52429689	52429689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatcgagcacatcaaccccGacaaggtgtgttgccctgcc	9	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52429689	T	T	52429689	3	4	194	1	0	0	0	0	1	0	0	0	4637	1058	37	3	11528	3	DNAH1	3	52429689	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	105274	52429689	145592741	328	155913											
NEK4	6787	broad.mit.edu	37	chr3	52797324	52797324	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaagctcagccaagaaacCctaagagggtagaattttgc	9	10	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52797324	T	T	52797324	1	4	194	0	1	0	0	0	0	0	0	0	10421	638	22	4		4	NEK4	3	52797324	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	367635	52797324	145225106	329	155914											
TKT	7086	broad.mit.edu	37	chr3	53263204	53263204	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagacccctacccccccatCcatgggctggaatcctggcc	8	18	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	53263204	T	T	53263204	1	4	194	0	1	0	0	0	0	0	0	0	16057	870	30	4		4	TKT	3	53263204	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	465880	53263204	144759226	330	155915											
DNAH12	201625	broad.mit.edu	37	chr3	57487972	57487972	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttctttcatggcagccccaGacaaacaaacatctgaccaa	6	13	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	57487972	C	C	57487972	1	2	194	0	1	0	0	0	0	0	0	0	4640	957	33	4		4	DNAH12	3	57487972	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4224768	57487972	140534458	331	155916											
FLNB	2317	broad.mit.edu	37	chr3	58116633	58116633	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agtgagggttctgggcccacGaggtaagtgtgcaccctgcc	15	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	58116633	C	C	58116633	3	2	194	1	0	0	0	0	1	0	0	0	5992	1058	37	4	4486	4	FLNB	3	58116633	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	628661	58116633	139905797	332	155917											
ABHD6	57406	broad.mit.edu	37	chr3	58279173	58279173	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagacagccacaagccccaAcaccaaagggacttggtcct	8	15	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	58279173	C	C	58279173	1	2	194	0	1	0	0	0	0	0	0	0	86	58	2	5		5	ABHD6	3	58279173	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	162540	58279173	139743257	333	155918											
ROBO1	6091	broad.mit.edu	37	chr3	78988050	78988050	+	Frame_Shift_Del	DEL	G	-	-													ggtgttcaacaatgcgaggtGgaaaatcttcctgacgaaga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	78988050	-	-	78988050	7	5	194	1	0	1	0	1	0	0	0	0	13624	1348	47	0	4880	0	ROBO1	3	78988050	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	20708877	78988050	119034380	334	155919											
VGLL3	389136	broad.mit.edu	37	chr3	86996125	86996125	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgacagtatcttttcccaGtgggcccttggatttatgct	9	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	86996125	T	T	86996125	1	4	194	0	1	0	0	0	0	0	0	0	17287	1044	36	3		3	VGLL3	3	86996125	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	8008075	86996125	111026305	335	155920											
EPHA6	285220	broad.mit.edu	37	chr3	96706570	96706570	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggattttatctggcttttCaagacattggggcgtgcatt	11	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	96706570	G	G	96706570	3	3	194	1	0	0	0	0	1	0	0	0	5213	827	29	4	857	4	EPHA6	3	96706570	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	9710445	96706570	101315860	336	155921											
TOMM70A	9868	broad.mit.edu	37	chr3	100084239	100084239	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagactgcaaacttccttcAacagccacacccacaacacc	3	18	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	100084239	C	C	100084239	1	2	194	0	1	0	0	0	0	0	0	0	16486	145	5	5		5	TOMM70A	3	100084239	3'UTR	SNP	A	TCGA-67-3771-01A-01D-1040-01	3377669	100084239	97938191	337	155922											
RETNLB	84666	broad.mit.edu	37	chr3	108475438	108475438	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggagagggactgtactctGagtaggaaagaagaaagggt	16	3	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	108475438	T	T	108475438	1	4	194	0	1	0	0	0	0	0	0	0	13345	1305	45	3		3	RETNLB	3	108475438	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	8391199	108475438	89546992	338	155923											
MORC1	27136	broad.mit.edu	37	chr3	108776168	108776168	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctttctctgcttatatctCtgaaagcaaaaacatactca	3	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	108776168	T	T	108776168	1	4	194	0	1	0	0	0	0	0	0	0	9795	928	32	4		4	MORC1	3	108776168	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	300730	108776168	89246262	339	155924											
MORC1	27136	broad.mit.edu	37	chr3	108778673	108778673	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttgtttctctttaagattCttttgctttgcttctacatc	4	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	108778673	T	T	108778673	2	4	194	1	0	0	0	0	0	0	0	1	9795	912	32	4		4	MORC1	3	108778673	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2505	108778673	89243757	340	155925											
QTRTD1	79691	broad.mit.edu	37	chr3	113798632	113798632	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgtccactgcctgccactCtaaccatgattggtgttttt	8	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	113798632	G	G	113798632	1	3	194	0	1	0	0	0	0	0	0	0	12994	928	32	4		4	QTRTD1	3	113798632	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	5019959	113798632	84223798	341	155926											
DRD3	1814	broad.mit.edu	37	chr3	113866313	113866313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacagcaaaggccagtaCccagacggccgtgatcatga	12	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	113866313	A	A	113866313	3	1	194	1	0	0	0	0	1	0	0	0	4798	507	18	3	743	3	DRD3	3	113866313	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	67681	113866313	84156117	342	155927											
POLQ	10721	broad.mit.edu	37	chr3	121192174	121192174	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtttaggttctgccctgcTctgtgactgccccaaagagc	10	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	121192174	C	C	121192174	1	2	194	0	1	0	0	0	0	0	0	0	12303	1566	54	5		5	POLQ	3	121192174	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	7325861	121192174	76830256	343	155928											
HCLS1	3059	broad.mit.edu	37	chr3	121363643	121363643	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggactggaggtgggtggttGggagagagagtggtcactta	20	3	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	121363643	A	A	121363643	1	1	194	0	1	0	0	0	0	0	0	0	7061	1363	47	4		4	HCLS1	3	121363643	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	171469	121363643	76658787	344	155929											
GOLGB1	2804	broad.mit.edu	37	chr3	121417151	121417151	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcagtgaatgcactgctgTtgttgtcagcatttttctta	9	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	121417151	C	C	121417151	3	2	194	1	0	0	0	0	1	0	0	0	6629	1725	60	5	7615	5	GOLGB1	3	121417151	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	53508	121417151	76605279	345	155930											
SEMA5B	54437	broad.mit.edu	37	chr3	122630855	122630855	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagctcctcacagtgccgGcttcggctctgggctccgtc	13	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	122630855	C	C	122630855	3	2	194	1	0	0	0	0	1	0	0	0	14151	1194	42	4	513	4	SEMA5B	3	122630855	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1213704	122630855	75391575	346	155931											
ADCY5	111	broad.mit.edu	37	chr3	123016354	123016354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccttggctccccagccCcattcaccctccatatccaa	4	20	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	123016354	A	A	123016354	1	1	194	0	1	0	0	0	0	0	0	0	297	638	22	2		2	ADCY5	3	123016354	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	385499	123016354	75006076	347	155932											
KALRN	8997	broad.mit.edu	37	chr3	124103792	124103792	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacaaggcagctcgacaccTggaggtgcgcatccaagact	11	13	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	124103792	A	A	124103792	3	1	194	1	0	0	0	0	1	0	0	0	8045	1580	55	5	1907	5	KALRN	3	124103792	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1087438	124103792	73918638	348	155933											
KALRN	8997	broad.mit.edu	37	chr3	124431933	124431933	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcacccccagtacatcactCtccatgacacctatgagtcc	5	17	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	124431933	T	T	124431933	3	4	194	1	0	0	0	0	1	0	0	0	8045	913	32	4	8613	4	KALRN	3	124431933	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	328141	124431933	73590497	349	155934											
OSBPL11	114885	broad.mit.edu	37	chr3	125286264	125286264	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaatgagcccttctgatgtGatgcatgctgtaactggaga	12	8	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	125286264	C	C	125286264	4	2	194	1	0	0	0	0	0	1	0	0	11370	1294	45	4	1433	4	OSBPL11	3	125286264	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	854331	125286264	72736166	350	155935											
UROC1	131669	broad.mit.edu	37	chr3	126220181	126220181	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgcataggtgccccagAcacacctgcaccccagctgc	9	18	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	126220181	T	T	126220181	1	4	194	0	1	0	0	0	0	0	0	0	17154	290	10	5		5	UROC1	3	126220181	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	933917	126220181	71802249	351	155936											
UROC1	131669	broad.mit.edu	37	chr3	126229653	126229653	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagctggggtaggagagcGgagaggcagtcggggctggg	23	7	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	126229653	A	A	126229653	1	1	194	0	1	0	0	0	0	0	0	0	17154	1131	39	4		4	UROC1	3	126229653	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	9472	126229653	71792777	352	155937											
PLXNA1	5361	broad.mit.edu	37	chr3	126749363	126749363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacttggggctccctggcGtggggacacaacccagcagg	14	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	126749363	T	T	126749363	1	4	194	0	1	0	0	0	0	0	0	0	12214	1160	40	3		3	PLXNA1	3	126749363	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	519710	126749363	71273067	353	155938											
MCM2	4171	broad.mit.edu	37	chr3	127324020	127324020	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggcttccctacgccccCgcctcagcccctgtagcgcc	10	20	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	127324020	T	T	127324020	1	4	194	0	1	0	0	0	0	0	0	0	9479	667	23	4		4	MCM2	3	127324020	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	574657	127324020	70698410	354	155939											
EEFSEC	60678	broad.mit.edu	37	chr3	128060645	128060645	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccatggcatcctgctccaCgggctagaggacaggaacta	11	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	128060645	T	T	128060645	2	4	194	1	0	0	0	0	0	0	0	1	4971	535	19	4		4	EEFSEC	3	128060645	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	736625	128060645	69961785	355	155940											
COPG	22820	broad.mit.edu	37	chr3	128984247	128984247	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgaccagccttttgtttGacaggaaagagtgatagagg	12	7	0	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	128984247	C	C	128984247	1	2	194	0	1	0	0	0	0	0	0	0	3763	1305	45	4		4	COPG	3	128984247	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	923602	128984247	69038183	356	155941											
NPHP3	27031	broad.mit.edu	37	chr3	132431946	132431946	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagtttactgcttataatAaattacattttttttcagct	3	6	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	132431946	G	G	132431946	1	3	194	0	1	0	0	0	0	0	0	0	10675	377	13	5		5	NPHP3	3	132431946	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	3447699	132431946	65590484	357	155942											
TF	7018	broad.mit.edu	37	chr3	133479967	133479967	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagtgccctcggttattgCagtaatcatgttcatgagta	9	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	133479967	T	T	133479967	1	4	194	0	1	0	0	0	0	0	0	0	15908	725	25	4		4	TF	3	133479967	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1048021	133479967	64542463	358	155943											
TF	7018	broad.mit.edu	37	chr3	133483667	133483667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaaaaaggcatggtttcCcaatctataaatcagggttt	7	6	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	133483667	A	A	133483667	1	1	194	0	1	0	0	0	0	0	0	0	15908	638	22	2		2	TF	3	133483667	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3700	133483667	64538763	359	155944											
STAG1	10274	broad.mit.edu	37	chr3	136087831	136087831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcagccactgcacctggCcaacttttttaaaagaaaga	8	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	136087831	A	A	136087831	1	1	194	0	1	0	0	0	0	0	0	0	15360	754	26	3		3	STAG1	3	136087831	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2604164	136087831	61934599	360	155945											
DBR1	51163	broad.mit.edu	37	chr3	137880881	137880881	+	Frame_Shift_Del	DEL	C	-	-													ccattccctgactccacagtCccaccaggtttcccctctct							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	137880881	-	-	137880881	7	5	194	1	0	1	0	1	0	0	0	0	4290	842	30	0	153	0	DBR1	3	137880881	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	1793050	137880881	60141549	361	155946											
ATP1B3	483	broad.mit.edu	37	chr3	141632747	141632747	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggaggcaactatttttAgattgttgtggttgggttaa	12	2	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	141632747	G	G	141632747	1	3	194	0	1	0	0	0	0	0	0	0	1138	435	15	5		5	ATP1B3	3	141632747	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	3751866	141632747	56389683	362	155947											
TFDP2	7029	broad.mit.edu	37	chr3	141678471	141678471	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttttaacaagtttggattCaacatttaatcagggacaac	8	6	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	141678471	T	T	141678471	1	4	194	0	1	0	0	0	0	0	0	0	15921	841	29	4		4	TFDP2	3	141678471	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	45724	141678471	56343959	363	155948											
ATR	545	broad.mit.edu	37	chr3	142169888	142169888	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaccagtgaatatgaatcaTccctggagctccaggaaaat	8	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	142169888	A	A	142169888	1	1	194	0	1	0	0	0	0	0	0	0	1208	1450	50	5		5	ATR	3	142169888	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	491417	142169888	55852542	364	155949											
ATR	545	broad.mit.edu	37	chr3	142279312	142279312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taattctataattatgaataTagtagagagatattcatatg	6	2	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	142279312	C	C	142279312	1	2	194	0	1	0	0	0	0	0	0	0	1208	1421	49	5		5	ATR	3	142279312	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	109424	142279312	55743118	365	155950											
MME	4311	broad.mit.edu	37	chr3	154864837	154864837	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcattttatgaacagtatGgatcaagttattcaattgct	6	6	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	154864837	A	A	154864837	1	1	194	0	1	0	0	0	0	0	0	0	9738	1363	47	4		4	MME	3	154864837	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	12585525	154864837	43157593	366	155951											
PLCH1	23007	broad.mit.edu	37	chr3	155215184	155215184	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagttctcggcagagcttcaTggttttccttcggcgaccca	11	12	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	155215184	A	A	155215184	3	1	194	1	0	0	0	0	1	0	0	0	12132	1464	51	5	3353	5	PLCH1	3	155215184	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	350347	155215184	42807246	367	155952											
SLC33A1	9197	broad.mit.edu	37	chr3	155571195	155571195	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	catagttaacgcccaaccatCgacggcaatgtcctgagtgg	10	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	155571195	G	G	155571195	3	3	194	1	0	0	0	0	1	0	0	0	14680	884	31	4	1081	4	SLC33A1	3	155571195	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	356011	155571195	42451235	368	155953											
GMPS	8833	broad.mit.edu	37	chr3	155615825	155615825	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggaatttgctatggtAtgcaggtatgtcagcaaatt	10	5	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	155615825	G	G	155615825	3	3	194	1	0	0	0	0	1	0	0	0	6562	449	16	5	329	5	GMPS	3	155615825	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	44630	155615825	42406605	369	155954											
SHOX2	6474	broad.mit.edu	37	chr3	157820536	157820536	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaggcgtcgggatagtgGgtctcgtcaaaaagcctctc	13	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	157820536	T	T	157820536	2	4	194	1	0	0	0	0	0	0	0	1	14402	1219	43	2		2	SHOX2	3	157820536	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	2204711	157820536	40201894	370	155955											
SLC7A14	57709	broad.mit.edu	37	chr3	170214601	170214601	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaccggctccgccagggcCatggttgtgcagaagattga	14	12	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	170214601	T	T	170214601	1	4	194	0	1	0	0	0	0	0	0	0	14810	609	21	4		4	SLC7A14	3	170214601	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	12394065	170214601	27807829	371	155956											
FNDC3B	64778	broad.mit.edu	37	chr3	171830226	171830226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtcctttttaaaaagcGgcggttctcttgcaggaagc	11	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	171830226	A	A	171830226	1	1	194	0	1	0	0	0	0	0	0	0	6028	1131	39	4		4	FNDC3B	3	171830226	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1615625	171830226	26192204	372	155957											
NLGN1	22871	broad.mit.edu	37	chr3	173998896	173998896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggttcttcggaccgcctgtCccccagattacacactagct	8	15	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	173998896	T	T	173998896	3	4	194	1	0	0	0	0	1	0	0	0	10556	855	30	4	2293	4	NLGN1	3	173998896	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2168670	173998896	24023534	373	155958											
ABCC5	10057	broad.mit.edu	37	chr3	183696484	183696484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagcaagttaaaagaagCctagggatgttgttcctcca	9	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	183696484	A	A	183696484	1	1	194	0	1	0	0	0	0	0	0	0	56	754	26	3		3	ABCC5	3	183696484	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	9697588	183696484	14325946	374	155959											
CHRD	8646	broad.mit.edu	37	chr3	184102332	184102332	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccctgcccccaggccgtggGtatctgccctgggctgggtg	15	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	184102332	C	C	184102332	3	2	194	1	0	0	0	0	1	0	0	0	3403	1261	44	4	1498	4	CHRD	3	184102332	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	405848	184102332	13920098	375	155960											
C3orf70	285382	broad.mit.edu	37	chr3	184801039	184801039	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggtgtattgctctcttttGaaattaaggcatcgtgtgca	10	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	184801039	C	C	184801039	4	2	194	1	0	0	0	0	0	1	0	0	2264	1294	45	4	247	4	C3orf70	3	184801039	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	698707	184801039	13221391	376	155961											
AHSG	197	broad.mit.edu	37	chr3	186333643	186333643	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagctccaccgattcacCcagcgtctcagcctgccttc	8	19	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	186333643	A	A	186333643	1	1	194	0	1	0	0	0	0	0	0	0	420	638	22	2		2	AHSG	3	186333643	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1532604	186333643	11688787	377	155962											
RTP4	64108	broad.mit.edu	37	chr3	187088747	187088747	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcctgagttctcctcggaTagcaccatgaggattctgag	11	10	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	187088747	C	C	187088747	2	2	194	1	0	0	0	0	0	0	0	1	13847	1403	49	5		5	RTP4	3	187088747	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	755104	187088747	10933683	378	155963											
BCL6	604	broad.mit.edu	37	chr3	187447838	187447838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaaaagaggaaagacacCggccccaaatcagaactgtt	9	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	187447838	A	A	187447838	1	1	194	0	1	0	0	0	0	0	0	0	1381	667	23	1		1	BCL6	3	187447838	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	359091	187447838	10574592	379	155964											
LEPREL1	55214	broad.mit.edu	37	chr3	189705572	189705573	+	Intron	INS	-	T	T													taaacatgaataagagggaaINSgataaattgaggctcagcag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	189705573	T	T	189705572	6	5	194	0	1	1	1	0	0	0	0	0	8802	87	3	0		0	LEPREL1	3	189705572	Intron	INS	-	TCGA-67-3771-01A-01D-1040-01	2257734	189705572	8316858	380	155965											
IL1RAP	3556	broad.mit.edu	37	chr3	190326975	190326975	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcacttggtatatggtaaGgaaaattagactacatttta	7	4	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	190326975	C	C	190326975	1	2	194	0	1	0	0	0	0	0	0	0	7730	1015	35	4		4	IL1RAP	3	190326975	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	621403	190326975	7695455	381	155966											
OPA1	4976	broad.mit.edu	37	chr3	193364866	193364866	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaataggacaagcatgctAaaggcacaccaagtgactac	8	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	193364866	G	G	193364866	2	3	194	1	0	0	0	0	0	0	0	1	10965	349	13	5		5	OPA1	3	193364866	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	3037891	193364866	4657564	382	155967											
LRRC15	131578	broad.mit.edu	37	chr3	194080147	194080147	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgccaattacaatggcGgcaatggccagcccgctctg	10	13	1	0	rs113394891	byFrequency;by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	194080147	T	T	194080147	2	4	194	1	0	0	0	0	0	0	0	1	9057	1103	39	1		1	LRRC15	3	194080147	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	715281	194080147	3942283	383	155968											
MUC4	4585	broad.mit.edu	37	chr3	195488599	195488599	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggcctccaggggagccggGaggacgggccctcacaccct	15	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	195488599	C	C	195488599	1	2	194	0	1	0	0	0	0	0	0	0	10072	1189	41	4		4	MUC4	3	195488599	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1408452	195488599	2533831	384	155969											
TNK2	10188	broad.mit.edu	37	chr3	195605489	195605489	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgaggaggtgcagagtttGacgacaaacagagcgcccag	16	8	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	195605489	C	C	195605489	1	2	194	0	1	0	0	0	0	0	0	0	16441	1305	45	4		4	TNK2	3	195605489	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	116890	195605489	2416941	385	155970											
SH3BP2	6452	broad.mit.edu	37	chr4	2822198	2822198	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctggaagcccaaggccCtcagaaaaggggtttccttg	11	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	2822198	T	T	2822198	1	4	194	0	1	0	0	0	0	0	0	0	14358	696	24	4		4	SH3BP2	4	2822198	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01		2822198	188332078	386	155971											
RGS12	6002	broad.mit.edu	37	chr4	3424297	3424297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggtgggcggggacaaGgtactgggcccgcctgaccc	16	13	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3424297	T	T	3424297	3	4	194	1	0	0	0	0	1	0	0	0	13404	1014	35	2	3129	2	RGS12	4	3424297	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	602099	3424297	187729979	387	155972											
OTOP1	133060	broad.mit.edu	37	chr4	4199621	4199621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggcccaggactgcgcCcaccatgaccccatcagact	10	17	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	4199621	A	A	4199621	3	1	194	1	0	0	0	0	1	0	0	0	11399	623	22	2	906	2	OTOP1	4	4199621	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	775324	4199621	186954655	388	155973											
JAKMIP1	152789	broad.mit.edu	37	chr4	6050537	6050537	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtttcttgtatggtgctGggaagctgggacaaggtgtg	16	5	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	6050537	A	A	6050537	1	1	194	0	1	0	0	0	0	0	0	0	8010	1363	47	4		4	JAKMIP1	4	6050537	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1850916	6050537	185103739	389	155974											
TADA2B	93624	broad.mit.edu	37	chr4	7056721	7056721	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctacctggacaaagtcctAaagaaaaggattttgaattt	8	6	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	7056721	C	C	7056721	2	2	194	1	0	0	0	0	0	0	0	1	15630	349	13	5		5	TADA2B	4	7056721	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	1006184	7056721	184097555	390	155975											
C4orf23	152992	broad.mit.edu	37	chr4	8467053	8467053	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttgttccgaatttccttGactgcgtctgctcaggatgc	10	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	8467053	T	T	8467053	1	4	194	0	1	0	0	0	0	0	0	0	2279	1305	45	3		3	C4orf23	4	8467053	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1410332	8467053	182687223	391	155976											
DRD5	1816	broad.mit.edu	37	chr4	9784051	9784051	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccatcctgaacctgtgcgTcatcagcgtggaccgctact	9	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	9784051	A	A	9784051	3	1	194	1	0	0	0	0	1	0	0	0	4800	1667	58	5	400	5	DRD5	4	9784051	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1316998	9784051	181370225	392	155977											
QDPR	5860	broad.mit.edu	37	chr4	17492487	17492487	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacctagagcctctggcacTgagggtgctatttacatgga	11	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17492487	A	A	17492487	1	1	194	0	1	0	0	0	0	0	0	0	12980	1595	55	5		5	QDPR	4	17492487	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	7708436	17492487	173661789	393	155978											
KLB	152831	broad.mit.edu	37	chr4	39448475	39448475	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcaacgacacctacgGggcggcgcacaacctgctgg	13	15	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39448475	A	A	39448475	3	1	194	1	0	0	0	0	1	0	0	0	8403	1232	43	4	2143	4	KLB	4	39448475	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	21955988	39448475	151705801	394	155979											
PDS5A	23244	broad.mit.edu	37	chr4	39870874	39870874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgaagtgggaggatcagcTgagcccaggagttcaagacc	15	9	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39870874	A	A	39870874	1	1	194	0	1	0	0	0	0	0	0	0	11785	1595	55	5		5	PDS5A	4	39870874	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	422399	39870874	151283402	395	155980											
N4BP2	55728	broad.mit.edu	37	chr4	40099000	40099000	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcttgggggaaatccttttCggaagactgcaaaccctaag	10	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	40099000	T	T	40099000	3	4	194	1	0	0	0	0	1	0	0	0	10204	875	31	4	42	4	N4BP2	4	40099000	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	228126	40099000	151055276	396	155981											
CORIN	10699	broad.mit.edu	37	chr4	47605760	47605760	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattcacatgtaattttaaaAcattttatttatgtaaataa	2	3	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	47605760	G	G	47605760	1	3	194	0	1	0	0	0	0	0	0	0	3784	58	2	5		5	CORIN	4	47605760	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	7506760	47605760	143548516	397	155982											
LRRC66	339977	broad.mit.edu	37	chr4	52869406	52869406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacctgtaattttttgaggtCcttgaaggcttgtgggggaa	13	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52869406	T	T	52869406	3	4	194	1	0	0	0	0	1	0	0	0	9105	855	30	4	2005	4	LRRC66	4	52869406	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	5263646	52869406	138284870	398	155983											
LPHN3	23284	broad.mit.edu	37	chr4	62542729	62542729	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatgcattgacaaatattcTctatgaaaacataaatcacg	5	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	62542729	C	C	62542729	1	2	194	0	1	0	0	0	0	0	0	0	9004	1566	54	5		5	LPHN3	4	62542729	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	9673323	62542729	128611547	399	155984											
EPHA5	2044	broad.mit.edu	37	chr4	66467425	66467425	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcccgatgggcaccagccActccccttcggcgctgcagt	10	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	66467425	G	G	66467425	3	3	194	1	0	0	0	0	1	0	0	0	5212	159	6	5	2333	5	EPHA5	4	66467425	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	3924696	66467425	124686851	400	155985											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68708241	68708241	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaagtatgccacattgtatCtatacttaaatattttttct	3	7	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	68708241	T	T	68708241	1	4	194	0	1	0	0	0	0	0	0	0	16364	928	32	4		4	TMPRSS11D	4	68708241	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2240816	68708241	122446035	401	155986											
UGT2B11	10720	broad.mit.edu	37	chr4	70070363	70070363	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaagctctggtttttggAtgacctaggattggatgaat	11	4	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	70070363	G	G	70070363	2	3	194	1	0	0	0	0	0	0	0	1	17083	330	12	5		5	UGT2B11	4	70070363	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	1362122	70070363	121083913	402	155987											
UGT2A1	10941	broad.mit.edu	37	chr4	70455391	70455391	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaagacaaataaataggcAgaaattagacaatttttgtt	7	3	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	70455391	G	G	70455391	1	3	194	0	1	0	0	0	0	0	0	0	17079	203	7	5		5	UGT2A1	4	70455391	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	385028	70455391	120698885	403	155988											
C4orf7	260436	broad.mit.edu	37	chr4	71096819	71096819	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aataattcgtactttaactgGatcttttaaattcatggtct	5	6	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	71096819	C	C	71096819	1	2	194	0	1	0	0	0	0	0	0	0	2302	1189	41	4		4	C4orf7	4	71096819	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	641428	71096819	120057457	404	155989											
AMTN	401138	broad.mit.edu	37	chr4	71398274	71398274	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatggaatagattgagacaCattggatagtcttagaagaa	10	3	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71398274	A	A	71398274	1	1	194	0	1	0	0	0	0	0	0	0	590	493	17	3		3	AMTN	4	71398274	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	301455	71398274	119756002	405	155990											
ANKRD17	26057	broad.mit.edu	37	chr4	73962875	73962875	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttccctcttttgcccAcgcttaggacttgctactgt	6	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	73962875	C	C	73962875	2	2	194	1	0	0	0	0	0	0	0	1	646	146	6	5		5	ANKRD17	4	73962875	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	2564601	73962875	117191401	406	155991											
ANKRD17	26057	broad.mit.edu	37	chr4	73979740	73979740	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctaagcaataaagatccaTgaaagggggaaaaaaggtgt	11	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	73979740	C	C	73979740	1	2	194	0	1	0	0	0	0	0	0	0	646	1479	51	5		5	ANKRD17	4	73979740	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	16865	73979740	117174536	407	155992											
SDAD1	55153	broad.mit.edu	37	chr4	76912084	76912084	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccagctgcagcttggactCgtgtttccgggtatgaccgg	14	11	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	76912084	G	G	76912084	1	3	194	0	1	0	0	0	0	0	0	0	14063	899	31	4		4	SDAD1	4	76912084	5'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	2932344	76912084	114242192	408	155993											
SCARB2	950	broad.mit.edu	37	chr4	77134780	77134780	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagccgccgcagaggcgtcGaagacccgggacccttcggc	16	15	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77134780	A	A	77134780	1	1	194	0	1	0	0	0	0	0	0	0	13994	1073	37	4		4	SCARB2	4	77134780	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	222696	77134780	114019496	409	155994											
HNRNPD	3184	broad.mit.edu	37	chr4	83277659	83277659	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtacaaaataaatgtcaaaTagcagttaatataaaaagta	5	3	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	83277659	C	C	83277659	1	2	194	0	1	0	0	0	0	0	0	0	7331	1421	49	5		5	HNRNPD	4	83277659	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	6142879	83277659	107876617	410	155995											
HELQ	113510	broad.mit.edu	37	chr4	84339310	84339310	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacacagtaagtcagcttcTtggtaagttctaccaaaagg	8	8	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	84339310	C	C	84339310	3	2	194	1	0	0	0	0	1	0	0	0	7114	1609	56	5	318	5	HELQ	4	84339310	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1061651	84339310	106814966	411	155996											
PPM1K	152926	broad.mit.edu	37	chr4	89189312	89189312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacattcactctccgcaggTttatcaagtgtttgcaggtc	8	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	89189312	C	C	89189312	1	2	194	0	1	0	0	0	0	0	0	0	12444	1740	60	5		5	PPM1K	4	89189312	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	4850002	89189312	101964964	412	155997											
BMPR1B	658	broad.mit.edu	37	chr4	96035850	96035850	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacattctgtttctcaCtttgcttgtttgatcttcag	5	11	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	96035850	T	T	96035850	1	4	194	0	1	0	0	0	0	0	0	0	1476	580	20	4		4	BMPR1B	4	96035850	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	6846538	96035850	95118426	413	155998											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99273625	99273625	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaacatgtctcttattttcAgagtttatgcgaattccatg	6	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	99273625	T	T	99273625	5	4	194	1	0	0	0	0	0	0	1	0	13147	202	7	5	251	5	RAP1GDS1	4	99273625	Splice_Site	SNP	A	TCGA-67-3771-01A-01D-1040-01	3237775	99273625	91880651	414	155999											
ADH1B	125	broad.mit.edu	37	chr4	100240138	100240138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatgtaatattgcgtccCatgtctggtacctaacaagt	8	9	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	100240138	A	A	100240138	1	1	194	0	1	0	0	0	0	0	0	0	308	609	21	2		2	ADH1B	4	100240138	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	966513	100240138	90914138	415	156000											
DDIT4L	115265	broad.mit.edu	37	chr4	101111162	101111162	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcaacggctctgtttccttCgcgaggcgcaacggcctttc	11	14	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	101111162	G	G	101111162	1	3	194	0	1	0	0	0	0	0	0	0	4365	899	31	4		4	DDIT4L	4	101111162	5'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	871024	101111162	90043114	416	156001											
PAPSS1	9061	broad.mit.edu	37	chr4	108576016	108576016	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctctttatcttcatgagtCgcagtcagaactataggtac	7	10	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108576016	A	A	108576016	2	1	194	1	0	0	0	0	0	0	0	1	11528	871	31	3		3	PAPSS1	4	108576016	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	7464854	108576016	82578260	417	156002											
LEF1	51176	broad.mit.edu	37	chr4	109086350	109086350	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatccccacacccaaaagaAagaaaatcaccttagagttt	5	11	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	109086350	C	C	109086350	1	2	194	0	1	0	0	0	0	0	0	0	8786	29	1	5		5	LEF1	4	109086350	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	510334	109086350	82067926	418	156003											
NEUROG2	63973	broad.mit.edu	37	chr4	113436310	113436310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacgggtcttcttgatgcGctgcaccgtctcggccgtct	11	14	5	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113436310	T	T	113436310	3	4	194	1	0	0	0	0	1	0	0	0	10448	1087	38	3	500	3	NEUROG2	4	113436310	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4349960	113436310	77717966	419	156004											
ANK2	287	broad.mit.edu	37	chr4	114209648	114209648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcaaaaaccaaggtaaaGtacttgtggtcattttcaat	7	7	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	114209648	T	T	114209648	1	4	194	0	1	0	0	0	0	0	0	0	621	1044	36	3		3	ANK2	4	114209648	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	773338	114209648	76944628	420	156005											
ANK2	287	broad.mit.edu	37	chr4	114282130	114282130	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcattcacagcataaaaGgtaccccccactttcttgag	7	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	114282130	T	T	114282130	1	4	194	0	1	0	0	0	0	0	0	0	621	1015	35	2		2	ANK2	4	114282130	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	72482	114282130	76872146	421	156006											
NDST4	64579	broad.mit.edu	37	chr4	115750957	115750957	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattattacctctggatccaTaggtggatattttcggcctt	8	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	115750957	C	C	115750957	3	2	194	1	0	0	0	0	1	0	0	0	10353	1406	49	5	138	5	NDST4	4	115750957	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1468827	115750957	75403319	422	156007											
NDST4	64579	broad.mit.edu	37	chr4	115769466	115769466	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgattgaaggatgcatAagaagaaataaataaagtgc	10	3	0	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	115769466	T	T	115769466	2	4	194	1	0	0	0	0	0	0	0	1	10353	349	13	5		5	NDST4	4	115769466	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	18509	115769466	75384810	423	156008											
NDST4	64579	broad.mit.edu	37	chr4	115898492	115898492	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgaagttttgggatgcctCttttgcaaatgtgtatgcat	10	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	115898492	T	T	115898492	1	4	194	0	1	0	0	0	0	0	0	0	10353	928	32	4		4	NDST4	4	115898492	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	129026	115898492	75255784	424	156009											
PRDM5	11107	broad.mit.edu	37	chr4	121738051	121738051	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acttcgcgaagactcctttaGactgcttttcgctgtgcact	8	12	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	121738051	C	C	121738051	3	2	194	1	0	0	0	0	1	0	0	0	12566	933	33	4	1257	4	PRDM5	4	121738051	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	5839559	121738051	69416225	425	156010											
TNIP3	79931	broad.mit.edu	37	chr4	122063033	122063033	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccatggatcttgcaggtGgaaaaccaagccgcagttac	10	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	122063033	T	T	122063033	3	4	194	1	0	0	0	0	1	0	0	0	16439	1348	47	2	166	2	TNIP3	4	122063033	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	324982	122063033	69091243	426	156011											
INTU	27152	broad.mit.edu	37	chr4	128629675	128629675	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttaaattgtttctgctAtatgattccattcttagata	4	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	128629675	G	G	128629675	1	3	194	0	1	0	0	0	0	0	0	0	7856	464	16	5		5	INTU	4	128629675	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	6566642	128629675	62524601	427	156012											
SLC25A31	83447	broad.mit.edu	37	chr4	128651782	128651782	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggaccttctggccggcGgagtcgcggcagctgtgtcc	17	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	128651782	A	A	128651782	3	1	194	1	0	0	0	0	1	0	0	0	14609	1117	39	4	84	4	SLC25A31	4	128651782	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	22107	128651782	62502494	428	156013											
MFSD8	256471	broad.mit.edu	37	chr4	128843023	128843023	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatggctataccttcccacTgtattttgggaaattgattt	8	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	128843023	A	A	128843023	3	1	194	1	0	0	0	0	1	0	0	0	9631	1580	55	5	474	5	MFSD8	4	128843023	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	191241	128843023	62311253	429	156014											
PCDH10	57575	broad.mit.edu	37	chr4	134072994	134072994	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaacatcctcatagtggatCaaaatgacaacgcccctgcc	6	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	134072994	G	G	134072994	3	3	194	1	0	0	0	0	1	0	0	0	11601	827	29	4	1701	4	PCDH10	4	134072994	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	5229971	134072994	57081282	430	156015											
SCOC	60592	broad.mit.edu	37	chr4	141302217	141302217	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatctcatgtcagcttctAgtgtttttcaaacaactgac	5	9	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	141302217	G	G	141302217	3	3	194	1	0	0	0	0	1	0	0	0	14046	420	15	5	527	5	SCOC	4	141302217	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	7229223	141302217	49852059	431	156016											
ZNF330	27309	broad.mit.edu	37	chr4	142143645	142143645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccatgtaatgcctcaatGgtatcagctttttttgatat	6	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	142143645	T	T	142143645	3	4	194	1	0	0	0	0	1	0	0	0	17974	1362	47	2	122	2	ZNF330	4	142143645	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	841428	142143645	49010631	432	156017											
INPP4B	8821	broad.mit.edu	37	chr4	143181690	143181690	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttccgctcacactttccgGggctgtacattcacatacca	6	14	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	143181690	A	A	143181690	3	1	194	1	0	0	0	0	1	0	0	0	7823	1232	43	4	2195	4	INPP4B	4	143181690	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1038045	143181690	47972586	433	156018											
LRBA	987	broad.mit.edu	37	chr4	151520208	151520208	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggatgtgtcgatcctagAgggttacgcacaaatcgtcg	12	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	151520208	C	C	151520208	2	2	194	1	0	0	0	0	0	0	0	1	9018	291	11	5		5	LRBA	4	151520208	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	8338518	151520208	39634068	434	156019											
SH3D19	152503	broad.mit.edu	37	chr4	152043451	152043451	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcagcatgaataatcttctCtgtataactcatttatcttg	6	8	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	152043451	G	G	152043451	1	3	194	0	1	0	0	0	0	0	0	0	14362	928	32	4		4	SH3D19	4	152043451	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	523243	152043451	39110825	435	156020											
NPY2R	4887	broad.mit.edu	37	chr4	156136166	156136166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtccgtgacattcaagGctaaaaagaacctggaggtc	12	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	156136166	T	T	156136166	3	4	194	1	0	0	0	0	1	0	0	0	10704	1203	42	3	1077	3	NPY2R	4	156136166	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4092715	156136166	35018110	436	156021											
ETFDH	2110	broad.mit.edu	37	chr4	159611593	159611593	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtaaacctttttaatAgttacgtgcttaataaagcg	7	6	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	159611593	T	T	159611593	1	4	194	0	1	0	0	0	0	0	0	0	5313	435	15	5		5	ETFDH	4	159611593	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	3475427	159611593	31542683	437	156022											
RAPGEF2	9693	broad.mit.edu	37	chr4	160259585	160259585	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taatcctgatttattgcagtCacatcatcgcattttagact	5	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	160259585	T	T	160259585	3	4	194	1	0	0	0	0	1	0	0	0	13152	838	29	4	1821	4	RAPGEF2	4	160259585	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	647992	160259585	30894691	438	156023											
MARCH1	55016	broad.mit.edu	37	chr4	164534557	164534557	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcttgcctggagaaacaAgttagataatttggcatctt	10	7	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	164534557	T	T	164534557	1	4	194	0	1	0	0	0	0	0	0	0	9390	69	3	5		5	MARCH1	4	164534557	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	4274972	164534557	26619719	439	156024											
ANP32C	23520	broad.mit.edu	37	chr4	165118606	165118606	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacttaaatatagatgcgtGaggtttggacacttttctgc	9	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	165118606	A	A	165118606	2	1	194	1	0	0	0	0	0	0	0	1	707	1277	45	4		4	ANP32C	4	165118606	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	584049	165118606	26035670	440	156025											
WDR17	116966	broad.mit.edu	37	chr4	177046604	177046604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgattttgtgtaaaatGtattaatagctcaattatta	7	2	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	177046604	T	T	177046604	1	4	194	0	1	0	0	0	0	0	0	0	17404	1392	48	3		3	WDR17	4	177046604	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	11927998	177046604	14107672	441	156026											
SDHA	6389	broad.mit.edu	37	chr5	251414	251414	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagggcccatgtgactgGgtcccgcctgcccctgatgg	15	14	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	251414	T	T	251414	1	4	194	0	1	0	0	0	0	0	0	0	14076	1247	43	2		2	SDHA	5	251414	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01		251414	180663846	442	156027											
ZDHHC11	79844	broad.mit.edu	37	chr5	801198	801198	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagatttcaacatgacccgcActgccacgtatcttacctga	6	13	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	801198	G	G	801198	1	3	194	0	1	0	0	0	0	0	0	0	17727	174	6	5		5	ZDHHC11	5	801198	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	549784	801198	180114062	443	156028											
SLC6A3	6531	broad.mit.edu	37	chr5	1421804	1421804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccacgtgtacactcccaaCctgattatggccatatgagt	9	12	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1421804	A	A	1421804	1	1	194	0	1	0	0	0	0	0	0	0	14799	522	18	3		3	SLC6A3	5	1421804	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	620606	1421804	179493456	444	156029											
ADAMTS16	170690	broad.mit.edu	37	chr5	5303476	5303476	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acggcgggtgcactatgactCggagccagtcccggccagcc	14	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	5303476	T	T	5303476	3	4	194	1	0	0	0	0	1	0	0	0	261	893	31	4	2959	4	ADAMTS16	5	5303476	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3881672	5303476	175611784	445	156030											
MED10	84246	broad.mit.edu	37	chr5	6378450	6378450	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggccctggggagaccCcggcagcctcgggccgccac	16	18	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6378450	T	T	6378450	1	4	194	0	1	0	0	0	0	0	0	0	9519	638	22	4		4	MED10	5	6378450	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1074974	6378450	174536810	446	156031											
CMBL	134147	broad.mit.edu	37	chr5	10288575	10288575	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgttttcagccactcaggGaagatagaccagtcgccaga	10	11	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	10288575	A	A	10288575	2	1	194	1	0	0	0	0	0	0	0	1	3608	1165	41	4		4	CMBL	5	10288575	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	3910125	10288575	170626685	447	156032											
ROPN1L	83853	broad.mit.edu	37	chr5	10461587	10461587	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctctctcaccacaacaatAatcaacacagaagactgcta	4	13	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	10461587	C	C	10461587	1	2	194	0	1	0	0	0	0	0	0	0	13636	377	13	5		5	ROPN1L	5	10461587	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	173012	10461587	170453673	448	156033											
CTNND2	1501	broad.mit.edu	37	chr5	11082809	11082809	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaatcagggagaacataccGatgagctccttatttctgac	9	9	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11082809	T	T	11082809	2	4	194	1	0	0	0	0	0	0	0	1	4054	1072	37	3		3	CTNND2	5	11082809	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	621222	11082809	169832451	449	156034											
DNAH5	1767	broad.mit.edu	37	chr5	13753672	13753672	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcccctaaaatagaaaaCaaacaccattgaaatacttt	2	10	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	13753672	A	A	13753672	1	1	194	0	1	0	0	0	0	0	0	0	4644	493	17	3		3	DNAH5	5	13753672	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2670863	13753672	167161588	450	156035											
FBXL7	23194	broad.mit.edu	37	chr5	15928326	15928326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctggcctgggacccgcGgctctggaggactatccgcc	13	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928326	T	T	15928326	3	4	194	1	0	0	0	0	1	0	0	0	5781	1116	39	1	465	1	FBXL7	5	15928326	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2174654	15928326	164986934	451	156036											
CDH12	1010	broad.mit.edu	37	chr5	21760782	21760782	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcactgactatctgaatTatctgcaacagagttgagat	9	8	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	21760782	C	C	21760782	3	2	194	1	0	0	0	0	1	0	0	0	3128	1744	61	5	878	5	CDH12	5	21760782	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	5832456	21760782	159154478	452	156037											
CDH10	1008	broad.mit.edu	37	chr5	24511389	24511390	+	Intron	DNP	CC	AA	AA													gaagagtatataatgcaatcCctactcctgaaacacacaga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24511390	AA	AA	24511389	1	1	194	0	1	0	0	0	0	0	0	0	3126	638	22	2		2	CDH10	5	24511389	Intron	DNP	CC	TCGA-67-3771-01A-01D-1040-01	2750607	24511389	156403871	453	156038											
CDH6	1004	broad.mit.edu	37	chr5	31313631	31313631	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagcaagggctggtggagCgtagcttgtcaccatgtatt	13	10	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	31313631	G	G	31313631	1	3	194	0	1	0	0	0	0	0	0	0	3144	783	27	4		4	CDH6	5	31313631	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	6802242	31313631	149601629	454	156039											
ADAMTS12	81792	broad.mit.edu	37	chr5	33527444	33527444	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtctggcagaaactggctGacagtttgtccttagtgcaa	12	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	33527444	A	A	33527444	3	1	194	1	0	0	0	0	1	0	0	0	257	1294	45	4	154	4	ADAMTS12	5	33527444	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2213813	33527444	147387816	455	156040											
SLC45A2	51151	broad.mit.edu	37	chr5	33947350	33947350	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacattacaccaaacaggCtgcacaggaccagggtggag	13	10	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	33947350	T	T	33947350	3	4	194	1	0	0	0	0	1	0	0	0	14755	797	28	4	329	4	SLC45A2	5	33947350	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	419906	33947350	146967910	456	156041											
NUP155	9631	broad.mit.edu	37	chr5	37364146	37364146	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattcttctttaacttgtttCaatagcttttgacttaatat	3	6	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	37364146	G	G	37364146	1	3	194	0	1	0	0	0	0	0	0	0	10851	841	29	4		4	NUP155	5	37364146	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3416796	37364146	143551114	457	156042											
C6	729	broad.mit.edu	37	chr5	41181413	41181413	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatgattactggaattaCtgttaattttcaagaaagaa	7	4	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	41181413	G	G	41181413	1	3	194	0	1	0	0	0	0	0	0	0	2338	580	20	4		4	C6	5	41181413	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3817267	41181413	139733847	458	156043											
C6	729	broad.mit.edu	37	chr5	41199909	41199909	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcttgcagtcagcctcttCaattttgcagagcttagatg	8	9	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	41199909	A	A	41199909	4	1	194	1	0	0	0	0	0	1	0	0	2338	835	29	3	2458	3	C6	5	41199909	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	18496	41199909	139715351	459	156044											
OXCT1	5019	broad.mit.edu	37	chr5	41739745	41739745	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtaggcttaggtgggtggAtcacaaggtcaggagatcga	17	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	41739745	C	C	41739745	1	2	194	0	1	0	0	0	0	0	0	0	11423	348	12	5		5	OXCT1	5	41739745	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	539836	41739745	139175515	460	156045											
MGC42105	167359	broad.mit.edu	37	chr5	43232316	43232316	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgagaaccatgtcaccaCggtaaaacaggcagcaagcc	9	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	43232316	T	T	43232316	1	4	194	0	1	0	0	0	0	0	0	0	9645	551	19	4		4	MGC42105	5	43232316	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1492571	43232316	137682944	461	156046											
GPX8	493869	broad.mit.edu	37	chr5	54456044	54456044	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcctcttgcagcttacccGctaaaatgttccgggcccag	10	14	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	54456044	A	A	54456044	2	1	194	1	0	0	0	0	0	0	0	1	6812	1074	38	4		4	GPX8	5	54456044	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	11223728	54456044	126459216	462	156047											
ANKRD55	79722	broad.mit.edu	37	chr5	55396242	55396242	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcatttctaagaagtgtgtCttggtgagagctagactgca	13	6	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	55396242	T	T	55396242	1	4	194	0	1	0	0	0	0	0	0	0	681	928	32	4		4	ANKRD55	5	55396242	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	940198	55396242	125519018	463	156048											
C5orf35	133383	broad.mit.edu	37	chr5	56208994	56208994	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catgttcaaatttaattataGgagacagaaccgcacttacc	6	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	56208994	C	C	56208994	1	2	194	0	1	0	0	0	0	0	0	0	2317	1015	35	4		4	C5orf35	5	56208994	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	812752	56208994	124706266	464	156049											
SGTB	54557	broad.mit.edu	37	chr5	65008895	65008895	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagcactgaattgcaacttGaaataaattttaatagtaaa	5	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	65008895	A	A	65008895	1	1	194	0	1	0	0	0	0	0	0	0	14339	1305	45	4		4	SGTB	5	65008895	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	8799901	65008895	115906365	465	156050											
CDK7	1022	broad.mit.edu	37	chr5	68531324	68531324	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaagtctccttgaagatgTctgtattattaattgactga	7	5	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	68531324	G	G	68531324	1	3	194	0	1	0	0	0	0	0	0	0	3179	1682	58	5		5	CDK7	5	68531324	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	3522429	68531324	112383936	466	156051											
BDP1	55814	broad.mit.edu	37	chr5	70806253	70806253	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaggaggttaagcctctaGgtgaaatgcaaacagatttg	12	5	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	70806253	A	A	70806253	3	1	194	1	0	0	0	0	1	0	0	0	1400	1000	35	4	3400	4	BDP1	5	70806253	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2274929	70806253	110109007	467	156052											
DMGDH	29958	broad.mit.edu	37	chr5	78296957	78296957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccatgtagccctggaagCagctctgcggctgcacctaa	11	14	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	78296957	A	A	78296957	1	1	194	0	1	0	0	0	0	0	0	0	4621	725	25	3		3	DMGDH	5	78296957	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	7490704	78296957	102618303	468	156053											
DMGDH	29958	broad.mit.edu	37	chr5	78340326	78340326	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattgatgttgaaccggaatGagaggatgttctagtccaat	11	5	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	78340326	A	A	78340326	2	1	194	1	0	0	0	0	0	0	0	1	4621	1277	45	4		4	DMGDH	5	78340326	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	43369	78340326	102574934	469	156054											
SERINC5	256987	broad.mit.edu	37	chr5	79454647	79454647	+	Intron	DEL	C	-	-													aaaagtgaccttgagtaactCccaagacttaccatgaatac							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	79454647	-	-	79454647	6	5	194	0	1	1	0	1	0	0	0	0	14196	870	30	0		0	SERINC5	5	79454647	Intron	DEL	C	TCGA-67-3771-01A-01D-1040-01	1114321	79454647	101460613	470	156055											
SPZ1	84654	broad.mit.edu	37	chr5	79616095	79616095	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaaaaccgttaaccctactCctgatcctcatcaagaatat	3	14	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	79616095	G	G	79616095	3	3	194	1	0	0	0	0	1	0	0	0	15245	855	30	4	63	4	SPZ1	5	79616095	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	161448	79616095	101299165	471	156056											
DHFR	1719	broad.mit.edu	37	chr5	79950244	79950244	+	Frame_Shift_Del	DEL	T	-	-													tgagcggtggccagggcaggTccccgttcttgccgatgccc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	79950244	-	-	79950244	7	5	194	1	0	1	0	1	0	0	0	0	4521	1667	58	0	522	0	DHFR	5	79950244	Frame_Shift_Del	DEL	T	TCGA-67-3771-01A-01D-1040-01	334149	79950244	100965016	472	156057											
FAM172A	83989	broad.mit.edu	37	chr5	92956752	92956757	+	In_Frame_Del	DEL	TGGTCT	-	-													cacagccggcttcagggagcTggtcttggcctctgaggctt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	92956757	-	-	92956752	7	5	194	1	0	1	0	1	0	0	0	0	5537	1580	55	0	62	0	FAM172A	5	92956752	In_Frame_Del	DEL	TGGTCT	TCGA-67-3771-01A-01D-1040-01	13006508	92956752	87958508	473	156058											
PJA2	9867	broad.mit.edu	37	chr5	108714382	108714382	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggctagtattattttgtTgtttcgtactaaccatttca	6	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108714382	A	A	108714382	3	1	194	1	0	0	0	0	1	0	0	0	12057	1812	63	5	1348	5	PJA2	5	108714382	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	15757630	108714382	72200878	474	156059											
EPB41L4A	64097	broad.mit.edu	37	chr5	111519791	111519791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccttaatacagcttccCactgaggcgctgaatcaacc	7	14	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	111519791	A	A	111519791	3	1	194	1	0	0	0	0	1	0	0	0	5197	595	21	2	540	2	EPB41L4A	5	111519791	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2805409	111519791	69395469	475	156060											
MCC	4163	broad.mit.edu	37	chr5	112406907	112406907	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttatggtcaggaggtcattTtgggatttgaggtgctcaat	14	4	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	112406907	C	C	112406907	2	2	194	1	0	0	0	0	0	0	0	1	9466	1838	64	5		5	MCC	5	112406907	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	887116	112406907	68508353	476	156061											
FEM1C	56929	broad.mit.edu	37	chr5	114879140	114879140	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaacaatttggtgagaagCcggagtttgccatcccgagc	12	11	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	114879140	A	A	114879140	2	1	194	1	0	0	0	0	0	0	0	1	5868	726	26	3		3	FEM1C	5	114879140	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2472233	114879140	66036120	477	156062											
AQPEP	206338	broad.mit.edu	37	chr5	115298888	115298888	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaatacatggtgctggagCtcagtgagcccctgaaacct	12	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	115298888	A	A	115298888	3	1	194	1	0	0	0	0	1	0	0	0	836	797	28	3	576	3	AQPEP	5	115298888	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	419748	115298888	65616372	478	156063											
LEAP2	116842	broad.mit.edu	37	chr5	132209844	132209844	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaagctgggcagaggagtGacaaggggacacatgaacct	17	7	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	132209844	C	C	132209844	1	2	194	0	1	0	0	0	0	0	0	0	8783	1305	45	4		4	LEAP2	5	132209844	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	16910956	132209844	48705416	479	156064											
HSPA4	3308	broad.mit.edu	37	chr5	132437501	132437501	+	Frame_Shift_Del	DEL	A	-	-													caggaatctgaagaacgaccAaaattatttgaagaactagg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	132437501	-	-	132437501	7	5	194	1	0	1	0	1	0	0	0	0	7481	117	5	0	2154	0	HSPA4	5	132437501	Frame_Shift_Del	DEL	A	TCGA-67-3771-01A-01D-1040-01	227657	132437501	48477759	480	156065											
DDX46	9879	broad.mit.edu	37	chr5	134118606	134118606	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accaatagaacaatatttaaGaacttttaatctgggttttg	6	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	134118606	C	C	134118606	1	2	194	0	1	0	0	0	0	0	0	0	4397	957	33	4		4	DDX46	5	134118606	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1681105	134118606	46796654	481	156066											
GFRA3	2676	broad.mit.edu	37	chr5	137593712	137593712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggttccacaggaaccCcggaaacccctgatttgaca	8	16	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	137593712	A	A	137593712	1	1	194	0	1	0	0	0	0	0	0	0	6413	638	22	2		2	GFRA3	5	137593712	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3475106	137593712	43321548	482	156067											
PFDN1	5201	broad.mit.edu	37	chr5	139682726	139682726	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggggaagggcgcgtcttActttgtgcgccggtctttct	16	9	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	139682726	G	G	139682726	1	3	194	0	1	0	0	0	0	0	0	0	11850	406	14	5		5	PFDN1	5	139682726	5'Flank	SNP	A	TCGA-67-3771-01A-01D-1040-01	2089014	139682726	41232534	483	156068											
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	chr5	139909060	139909060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaggcccaccagctgcaGtgcagctttcttcagctgtg	10	14	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	139909060	T	T	139909060	3	4	194	1	0	0	0	0	1	0	0	0	629	1029	36	3	6643	3	ANKHD1-EIF4EBP3	5	139909060	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	226334	139909060	41006200	484	156069											
PCDHA2	56146	broad.mit.edu	37	chr5	140174546	140174546	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaaaacattgaggattGgtaatggcgtcttctatcag	10	6	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	140174546	T	T	140174546	1	4	194	0	1	0	0	0	0	0	0	0	11618	1363	47	2		2	PCDHA2	5	140174546	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	265486	140174546	40740714	485	156070											
PCDHA2	56146	broad.mit.edu	37	chr5	140176995	140176995	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctttttaaaaaattctatAtgatttctactagttattta	2	4	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	140176995	T	T	140176995	1	4	194	0	1	0	0	0	0	0	0	0	11618	449	16	5		5	PCDHA2	5	140176995	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	2449	140176995	40738265	486	156071											
PCDHA4	56144	broad.mit.edu	37	chr5	140189081	140189081	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccacccaagaccgacctcaTggccttcagccccagtttac	6	19	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	140189081	C	C	140189081	3	2	194	1	0	0	0	0	1	0	0	0	11620	1464	51	5	2311	5	PCDHA4	5	140189081	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	12086	140189081	40726179	487	156072											
PCDHAC1	56135	broad.mit.edu	37	chr5	140308879	140308879	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtattcagattcggaataGgaaaggggatcacgctaatg	12	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	140308879	A	A	140308879	3	1	194	1	0	0	0	0	1	0	0	0	11626	1000	35	4	2404	4	PCDHAC1	5	140308879	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	119798	140308879	40606381	488	156073											
PCDHB5	26167	broad.mit.edu	37	chr5	140515957	140515957	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcgaggcaactccatattAtaacgtggaaattgtagcca	8	8	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	140515957	C	C	140515957	3	2	194	1	0	0	0	0	1	0	0	0	11639	449	16	5	943	5	PCDHB5	5	140515957	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	207078	140515957	40399303	489	156074											
PCDHB5	26167	broad.mit.edu	37	chr5	140516601	140516601	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcaggcgttcgagttcCgcgtgggagccacagaccgc	14	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	140516601	T	T	140516601	3	4	194	1	0	0	0	0	1	0	0	0	11639	652	23	4	1587	4	PCDHB5	5	140516601	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	644	140516601	40398659	490	156075											
PCDHB6	56130	broad.mit.edu	37	chr5	140530479	140530479	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggctaacgctgatcgcgcTggatggcgggtctccgcccc	14	15	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	140530479	A	A	140530479	3	1	194	1	0	0	0	0	1	0	0	0	11640	1580	55	5	643	5	PCDHB6	5	140530479	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	13878	140530479	40384781	491	156076											
PCDHB8	56128	broad.mit.edu	37	chr5	140558439	140558439	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtagacacaggagtcaAcggagagatttcctattcac	11	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	140558439	G	G	140558439	3	3	194	1	0	0	0	0	1	0	0	0	11642	43	2	5	826	5	PCDHB8	5	140558439	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	27960	140558439	40356821	492	156077											
PCDHGB6	56100	broad.mit.edu	37	chr5	140788971	140788971	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattcttcttccaataactActacaaactggtgacagatg	5	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	140788971	T	T	140788971	3	4	194	1	0	0	0	0	1	0	0	0	11661	391	14	5	1204	5	PCDHGB6	5	140788971	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	230532	140788971	40126289	493	156078											
PCDHGA12	26025	broad.mit.edu	37	chr5	140811320	140811320	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggatattctgcgcgagccAaagtcctgatcactgttctg	10	11	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	140811320	G	G	140811320	3	3	194	1	0	0	0	0	1	0	0	0	11647	131	5	5	996	5	PCDHGA12	5	140811320	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	22349	140811320	40103940	494	156079											
DIAPH1	1729	broad.mit.edu	37	chr5	140956994	140956994	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatttaaggaattcactctCtccacttaggctcaaattca	5	10	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	140956994	G	G	140956994	1	3	194	0	1	0	0	0	0	0	0	0	4558	928	32	4		4	DIAPH1	5	140956994	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	145674	140956994	39958266	495	156080											
ARAP3	64411	broad.mit.edu	37	chr5	141059053	141059053	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttgttgaataactggataCatggccgccaccgactcacc	8	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	141059053	G	G	141059053	1	3	194	0	1	0	0	0	0	0	0	0	842	493	17	4		4	ARAP3	5	141059053	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	102059	141059053	39856207	496	156081											
PCDH1	5097	broad.mit.edu	37	chr5	141233739	141233739	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatcatggctactgtgggaGaaggcactgtaggagggcag	17	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	141233739	C	C	141233739	3	2	194	1	0	0	0	0	1	0	0	0	11600	933	33	4	135	4	PCDH1	5	141233739	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	174686	141233739	39681521	497	156082											
PCYOX1L	78991	broad.mit.edu	37	chr5	148743793	148743793	+	Intron	DEL	G	-	-													ggtagggctggcagagctgtGgggatggcgttccaggggaa							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	148743793	-	-	148743793	6	5	194	0	1	1	0	1	0	0	0	0	11703	1363	47	0		0	PCYOX1L	5	148743793	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	7510054	148743793	32171467	498	156083											
ARHGEF37	389337	broad.mit.edu	37	chr5	149001437	149001437	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaagctgctggaggtgggcAgtgtgacctaccaggaggag	18	7	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	149001437	T	T	149001437	3	4	194	1	0	0	0	0	1	0	0	0	908	188	7	5	1177	5	ARHGEF37	5	149001437	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	257644	149001437	31913823	499	156084											
PPARGC1B	133522	broad.mit.edu	37	chr5	149214842	149214842	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgacttgcttctttcctttCtgtcctccctgcctccacca	4	18	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	149214842	T	T	149214842	1	4	194	0	1	0	0	0	0	0	0	0	12397	928	32	4		4	PPARGC1B	5	149214842	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	213405	149214842	31700418	500	156085											
PDE6A	5145	broad.mit.edu	37	chr5	149286809	149286809	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccactctcttcttgatcTgaaatccttccactctttct	2	14	5	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	149286809	A	A	149286809	1	1	194	0	1	0	0	0	0	0	0	0	11739	1595	55	5		5	PDE6A	5	149286809	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	71967	149286809	31628451	501	156086											
CSF1R	1436	broad.mit.edu	37	chr5	149433914	149433914	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgtcctcttgggcctgctCctgaaggaaggagcagatct	12	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	149433914	A	A	149433914	4	1	194	1	0	0	0	0	0	1	0	0	3966	864	30	3	192	3	CSF1R	5	149433914	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	147105	149433914	31481346	502	156087											
CSF1R	1436	broad.mit.edu	37	chr5	149449639	149449639	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catcacacctggcaaaagcaGaatgtggctcagagcttcag	10	11	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	149449639	A	A	149449639	1	1	194	0	1	0	0	0	0	0	0	0	3966	957	33	4		4	CSF1R	5	149449639	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	15725	149449639	31465621	503	156088											
TCOF1	6949	broad.mit.edu	37	chr5	149749093	149749093	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccgtgtccgatcctcaggGatggtgtcagcgggccaggc	15	13	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	149749093	A	A	149749093	2	1	194	1	0	0	0	0	0	0	0	1	15830	1188	41	4		4	TCOF1	5	149749093	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	299454	149749093	31166167	504	156089											
ZNF300	91975	broad.mit.edu	37	chr5	150276098	150276098	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaggtattactccattgtGaatcttctcaagattagaat	6	6	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	150276098	A	A	150276098	3	1	194	1	0	0	0	0	1	0	0	0	17957	1290	45	4	1115	4	ZNF300	5	150276098	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	527005	150276098	30639162	505	156090											
SLC36A2	153201	broad.mit.edu	37	chr5	150701583	150701583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaaagatcagcaggaaCactgcactctcctttctact	6	12	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	150701583	A	A	150701583	1	1	194	0	1	0	0	0	0	0	0	0	14708	493	17	3		3	SLC36A2	5	150701583	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	425485	150701583	30213677	506	156091											
GM2A	2760	broad.mit.edu	37	chr5	150760646	150760646	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgaggcaccagccacaCgaccatgtcaccacctctgc	8	18	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	150760646	A	A	150760646	1	1	194	0	1	0	0	0	0	0	0	0	6548	551	19	3		3	GM2A	5	150760646	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	59063	150760646	30154614	507	156092											
FAT2	2196	broad.mit.edu	37	chr5	150921751	150921751	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtcacactgctaataagTggcaaatccaggacatgaac	9	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	150921751	C	C	150921751	1	2	194	0	1	0	0	0	0	0	0	0	5747	1711	59	5		5	FAT2	5	150921751	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	161105	150921751	29993509	508	156093											
FAT2	2196	broad.mit.edu	37	chr5	150924904	150924904	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtcccaggaaagcaggattCagcacagatatgctaccagt	10	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	150924904	A	A	150924904	2	1	194	1	0	0	0	0	0	0	0	1	5747	813	29	3		3	FAT2	5	150924904	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	3153	150924904	29990356	509	156094											
GALNT10	55568	broad.mit.edu	37	chr5	153796519	153796519	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaacagtcttggaaaaatTcaataggaactgagccctca	7	10	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	153796519	G	G	153796519	3	3	194	1	0	0	0	0	1	0	0	0	6270	1783	62	5	1845	5	GALNT10	5	153796519	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	2871615	153796519	27118741	510	156095											
GALNT10	55568	broad.mit.edu	37	chr5	153796538	153796538	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaataggaactgagccctCatgtccccttggcaggcccc	9	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	153796538	T	T	153796538	1	4	194	0	1	0	0	0	0	0	0	0	6270	841	29	4		4	GALNT10	5	153796538	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	19	153796538	27118722	511	156096											
ITK	3702	broad.mit.edu	37	chr5	156638418	156638418	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattgaatcactgacactctTgatcctatagtagggttggg	10	8	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	156638418	A	A	156638418	1	1	194	0	1	0	0	0	0	0	0	0	7979	1827	63	5		5	ITK	5	156638418	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	2841880	156638418	24276842	512	156097											
THG1L	54974	broad.mit.edu	37	chr5	157158442	157158442	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggccctttcctttccgcGtgtagaatgtggggcgcctg	13	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	157158442	A	A	157158442	1	1	194	1	0	0	0	0	0	0	0	0	15984	1160	40	4		4	THG1L	5	157158442	Translation_Start_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	520024	157158442	23756818	513	156098											
THG1L	54974	broad.mit.edu	37	chr5	157159837	157159837	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgtgttgttaatgacagGcttccatccatgctttcttc	9	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	157159837	T	T	157159837	1	4	194	0	1	0	0	0	0	0	0	0	15984	1218	42	3		3	THG1L	5	157159837	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1395	157159837	23755423	514	156099											
RNF145	153830	broad.mit.edu	37	chr5	158634916	158634916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgccatcggccgctcagCctgggtcacgactgcagcac	11	17	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	158634916	A	A	158634916	1	1	194	0	1	0	0	0	0	0	0	0	13558	754	26	3		3	RNF145	5	158634916	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1475079	158634916	22280344	515	156100											
ATP10B	23120	broad.mit.edu	37	chr5	160076380	160076380	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaggtaatccatgctttgtCacactttgatagttgtaatg	8	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	160076380	G	G	160076380	1	3	194	0	1	0	0	0	0	0	0	0	1121	841	29	4		4	ATP10B	5	160076380	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1441464	160076380	20838880	516	156101											
GPRIN1	114787	broad.mit.edu	37	chr5	176025235	176025235	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggctgtgggagccgccTttccagaggccaccagacct	13	14	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	176025235	A	A	176025235	3	1	194	1	0	0	0	0	1	0	0	0	6795	1609	56	5	1429	5	GPRIN1	5	176025235	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	15948855	176025235	4890025	517	156102											
TSPAN17	26262	broad.mit.edu	37	chr5	176084058	176084058	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgacgggcaaggctgcagGagatgttcctgctgggactg	16	10	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	176084058	T	T	176084058	1	4	194	0	1	0	0	0	0	0	0	0	16766	1189	41	3		3	TSPAN17	5	176084058	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	58823	176084058	4831202	518	156103											
FAM153A	285596	broad.mit.edu	37	chr5	177163717	177163717	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagatggtaaatagtacttGagacaatggccccgatatct	9	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	177163717	T	T	177163717	1	4	194	0	1	0	0	0	0	0	0	0	5506	1305	45	3		3	FAM153A	5	177163717	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1079659	177163717	3751543	519	156104											
AGXT2L2	85007	broad.mit.edu	37	chr5	177636519	177636519	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttccaagcctgtcttgggGctccctctggtgctgtgcag	12	14	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	177636519	A	A	177636519	1	1	194	0	1	0	0	0	0	0	0	0	407	1218	42	4		4	AGXT2L2	5	177636519	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	472802	177636519	3278741	520	156105											
CLK4	57396	broad.mit.edu	37	chr5	178040602	178040602	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaacacaatacaaacatgaCcatgatgatcaaaccattct	3	11	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	178040602	G	G	178040602	3	3	194	1	0	0	0	0	1	0	0	0	3571	507	18	4	775	4	CLK4	5	178040602	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	404083	178040602	2874658	521	156106											
ZNF354C	30832	broad.mit.edu	37	chr5	178506897	178506897	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttttaaccgaacatgagagGatccacactggagagaaact	9	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	178506897	C	C	178506897	3	2	194	1	0	0	0	0	1	0	0	0	17992	1165	41	4	1478	4	ZNF354C	5	178506897	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	466295	178506897	2408363	522	156107											
TBC1D9B	23061	broad.mit.edu	37	chr5	179306823	179306823	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggaaggggacgccctaaCaactgtgctgccaggtggcc	15	12	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	179306823	G	G	179306823	1	3	194	0	1	0	0	0	0	0	0	0	15750	493	17	4		4	TBC1D9B	5	179306823	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	799926	179306823	1608437	523	156108											
FLT4	2324	broad.mit.edu	37	chr5	180043888	180043888	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgtctgaagggccttcgGgggaagctcacctttcggga	14	12	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	180043888	T	T	180043888	1	4	194	0	1	0	0	0	0	0	0	0	6002	1247	43	2		2	FLT4	5	180043888	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	737065	180043888	871372	524	156109											
OR2V2	285659	broad.mit.edu	37	chr5	180581966	180581966	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacgtgggtgaaccagtcCtacacagatggcttcttcct	11	11	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	180581966	A	A	180581966	2	1	194	1	0	0	0	0	0	0	0	1	11125	668	24	2		2	OR2V2	5	180581966	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	538078	180581966	333294	525	156110											
OR2V2	285659	broad.mit.edu	37	chr5	180582654	180582654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcaggcctggaaaaagGccctggccacctgctcctcc	10	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	180582654	T	T	180582654	3	4	194	1	0	0	0	0	1	0	0	0	11125	1203	42	3	714	3	OR2V2	5	180582654	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	688	180582654	332606	526	156111											
HUS1B	135458	broad.mit.edu	37	chr6	656540	656540	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacactctcctgggaagcacCcgcacgggcagatcgtgcac	11	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	656540	A	A	656540	2	1	194	1	0	0	0	0	0	0	0	1	7530	610	22	2		2	HUS1B	6	656540	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01		656540	170458527	527	156112											
GMDS	2762	broad.mit.edu	37	chr6	1930451	1930451	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccggctaatttttcgagtAacgaaattagctcctaaaaa	7	8	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1930451	T	T	1930451	2	4	194	1	0	0	0	0	0	0	0	1	6550	349	13	5		5	GMDS	6	1930451	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	1273911	1930451	169184616	528	156113											
CDYL	9425	broad.mit.edu	37	chr6	4892412	4892412	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttcagagcgagagccctGagaaactggaccccgtcgag	13	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	4892412	T	T	4892412	4	4	194	1	0	0	0	0	0	1	0	0	3215	1291	45	3	496	3	CDYL	6	4892412	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2961961	4892412	166222655	529	156114											
NEDD9	4739	broad.mit.edu	37	chr6	11185641	11185641	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaatgaacaccagtttgtgTgcactgaggatgacaaactt	9	9	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	11185641	A	A	11185641	2	1	194	1	0	0	0	0	0	0	0	1	10408	1683	59	5		5	NEDD9	6	11185641	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	6293229	11185641	159929426	530	156115											
CD83	9308	broad.mit.edu	37	chr6	14131775	14131775	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagggtggtgaagagaggAtggagacaccccaggaagac	18	6	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	14131775	T	T	14131775	3	4	194	1	0	0	0	0	1	0	0	0	3071	333	12	5	188	5	CD83	6	14131775	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	2946134	14131775	156983292	531	156116											
MBOAT1	154141	broad.mit.edu	37	chr6	20153082	20153082	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttttgttttgttttgttttGagacggagtctcgttctgtc	11	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	20153082	C	C	20153082	1	2	194	0	1	0	0	0	0	0	0	0	9449	1305	45	4		4	MBOAT1	6	20153082	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	6021307	20153082	150961985	532	156117											
KIAA0319	9856	broad.mit.edu	37	chr6	24566722	24566722	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaagcctccttatacttatAtcctttccttagaatatacc	2	11	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	24566722	T	T	24566722	1	4	194	0	1	0	0	0	0	0	0	0	8238	464	16	5		5	KIAA0319	6	24566722	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	4413640	24566722	146548345	533	156118											
HIST1H2AA	221613	broad.mit.edu	37	chr6	25726878	25726878	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatggccgtctacccaatcaGaaagtcgtactagaatcgcc	9	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	25726878	A	A	25726878	1	1	194	0	1	0	0	0	0	0	0	0	7195	957	33	4		4	HIST1H2AA	6	25726878	5'Flank	SNP	G	TCGA-67-3771-01A-01D-1040-01	1160156	25726878	145388189	534	156119											
TRIM38	10475	broad.mit.edu	37	chr6	25973379	25973379	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgcacctctgaagaaatCtctcgcctctgcttattcta	6	12	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	25973379	T	T	25973379	1	4	194	0	1	0	0	0	0	0	0	0	16636	928	32	4		4	TRIM38	6	25973379	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	246501	25973379	145141688	535	156120											
HIST1H2BI	8346	broad.mit.edu	37	chr6	26273408	26273408	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttatgaactccttcgtcaacGacattttcgagcgcattgca	7	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	26273408	A	A	26273408	3	1	194	1	0	0	0	0	1	0	0	0	7215	1058	37	4	207	4	HIST1H2BI	6	26273408	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	300029	26273408	144841659	536	156121											
HMGN4	10473	broad.mit.edu	37	chr6	26545530	26545530	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcggttgtctgctaaaccAgctcctccaaaaccagagcc	8	15	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	26545530	G	G	26545530	2	3	194	1	0	0	0	0	0	0	0	1	7304	175	7	5		5	HMGN4	6	26545530	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	272122	26545530	144569537	537	156122											
ZNF184	7738	broad.mit.edu	37	chr6	27420806	27420806	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaattcattatttacagGgcctttttcccaactgggta	6	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	27420806	A	A	27420806	3	1	194	1	0	0	0	0	1	0	0	0	17877	1232	43	4	1727	4	ZNF184	6	27420806	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	875276	27420806	143694261	538	156123											
ZNF311	282890	broad.mit.edu	37	chr6	28963357	28963357	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaaaggctttcccacactcCtcacacctgtaacgtttctc	5	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	28963357	T	T	28963357	2	4	194	1	0	0	0	0	0	0	0	1	17960	680	24	4		4	ZNF311	6	28963357	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1542551	28963357	142151710	539	156124											
ZFP57	346171	broad.mit.edu	37	chr6	29644964	29644964	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctccaagaggctgtcttcCttttttgttctgctgtccaa	8	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	29644964	T	T	29644964	1	4	194	0	1	0	0	0	0	0	0	0	17777	696	24	4		4	ZFP57	6	29644964	5'Flank	SNP	C	TCGA-67-3771-01A-01D-1040-01	681607	29644964	141470103	540	156125											
HLA-G	3135	broad.mit.edu	37	chr6	29864644	29864644	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcttctagagacaagtAgagatacacatgccatgtgc	10	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	29864644	G	G	29864644	1	3	194	0	1	0	0	0	0	0	0	0	7279	435	15	5		5	HLA-G	6	29864644	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	219680	29864644	141250423	541	156126											
TRIM31	11074	broad.mit.edu	37	chr6	30080680	30080680	+	Intron	DEL	G	-	-													ctgtttctaggaagggagaaGggagtcagagaaagtggagg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	30080680	-	-	30080680	6	5	194	0	1	1	0	1	0	0	0	0	16629	1015	35	0		0	TRIM31	6	30080680	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	216036	30080680	141034387	542	156127											
TRIM10	10107	broad.mit.edu	37	chr6	30125268	30125268	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatttattttttatttgctTgtttgtttgtttgagaaagg	8	1	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	30125268	C	C	30125268	1	2	194	0	1	0	0	0	0	0	0	0	16610	1827	63	5		5	TRIM10	6	30125268	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	44588	30125268	140989799	543	156128											
CCHCR1	54535	broad.mit.edu	37	chr6	31118691	31118691	+	Intron	DEL	C	-	-													tggggcgccctgcagatccaCcacatcactaattgctgggc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	31118691	-	-	31118691	6	5	194	0	1	1	0	1	0	0	0	0	2905	522	18	0		0	CCHCR1	6	31118691	Intron	DEL	C	TCGA-67-3771-01A-01D-1040-01	993423	31118691	139996376	544	156129											
C2	717	broad.mit.edu	37	chr6	31901508	31901508	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctcacggggtcttcggaGcgggagtgccagggcaacgg	19	10	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31901508	A	A	31901508	2	1	194	1	0	0	0	0	0	0	0	1	2096	962	34	4		4	C2	6	31901508	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	782817	31901508	139213559	545	156130											
TNXB	7148	broad.mit.edu	37	chr6	32017941	32017941	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccattcctgtactggacCaggaagtggtcaaactggcc	10	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	32017941	A	A	32017941	2	1	194	1	0	0	0	0	0	0	0	1	16469	581	21	2		2	TNXB	6	32017941	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	116433	32017941	139097126	546	156131											
TNXB	7148	broad.mit.edu	37	chr6	32037579	32037579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtggtcacctgcagctcctCccccagacggggttttgggg	15	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	32037579	T	T	32037579	3	4	194	1	0	0	0	0	1	0	0	0	16469	864	30	4	9495	4	TNXB	6	32037579	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	19638	32037579	139077488	547	156132											
NUDT3	11165	broad.mit.edu	37	chr6	34263448	34263448	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaactaatcttcccaatgtCccttttactccagcctagaa	3	15	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	34263448	G	G	34263448	2	3	194	1	0	0	0	0	0	0	0	1	10835	842	30	4		4	NUDT3	6	34263448	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2225869	34263448	136851619	548	156133											
TBC1D22B	55633	broad.mit.edu	37	chr6	37298965	37298965	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataggtgctgtctcctccggGgacccagactgccttcatct	10	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37298965	T	T	37298965	1	4	194	0	1	0	0	0	0	0	0	0	15731	1247	43	2		2	TBC1D22B	6	37298965	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	3035517	37298965	133816102	549	156134											
MDGA1	266727	broad.mit.edu	37	chr6	37620158	37620158	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggtagttggggttggcctGactccaggggtccatgtccc	16	10	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37620158	T	T	37620158	1	4	194	0	1	0	0	0	0	0	0	0	9499	1305	45	3		3	MDGA1	6	37620158	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	321193	37620158	133494909	550	156135											
GLO1	2739	broad.mit.edu	37	chr6	38670747	38670747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcggtcctgtgcccacCttggtactggggtccgcgtc	12	16	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	38670747	A	A	38670747	3	1	194	1	0	0	0	0	1	0	0	0	6513	695	24	2	494	2	GLO1	6	38670747	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1050589	38670747	132444320	551	156136											
DNAH8	1769	broad.mit.edu	37	chr6	38790861	38790861	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttttgtttgtctctaattCttgagggtggaccaggaaaa	12	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	38790861	T	T	38790861	1	4	194	0	1	0	0	0	0	0	0	0	4647	928	32	4		4	DNAH8	6	38790861	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	120114	38790861	132324206	552	156137											
MOCS1	4337	broad.mit.edu	37	chr6	39880459	39880459	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccccaccctagccgagccCacatcttcatccatgaaaca	4	20	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39880459	A	A	39880459	1	1	194	0	1	0	0	0	0	0	0	0	9784	609	21	2		2	MOCS1	6	39880459	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1089598	39880459	131234608	553	156138											
TSPO2	222642	broad.mit.edu	37	chr6	41010795	41010795	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtctggctgttcactcGtgatcacatgtctggttggt	12	10	4	1	rs148297848	byFrequency;by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	41010795	A	A	41010795	3	1	194	1	0	0	0	0	1	0	0	0	16781	1145	40	4	73	4	TSPO2	6	41010795	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1130336	41010795	130104272	554	156139											
UBR2	23304	broad.mit.edu	37	chr6	42559878	42559878	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acactttgatttttttttttTaactttacagagactgtgca	5	6	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	42559878	A	A	42559878	1	1	194	0	1	0	0	0	0	0	0	0	17028	1769	61	5		5	UBR2	6	42559878	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1549083	42559878	128555189	555	156140											
CAPN11	11131	broad.mit.edu	37	chr6	44144038	44144038	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgattcgggtccggaatcccTggggccggattgagtggaat	16	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44144038	A	A	44144038	3	1	194	1	0	0	0	0	1	0	0	0	2650	1580	55	5	998	5	CAPN11	6	44144038	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1584160	44144038	126971029	556	156141											
MEP1A	4224	broad.mit.edu	37	chr6	46766762	46766762	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtgatagactgtttgctCtgtgagagtttagtgaagga	14	3	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	46766762	G	G	46766762	1	3	194	0	1	0	0	0	0	0	0	0	9568	928	32	4		4	MEP1A	6	46766762	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2622724	46766762	124348305	557	156142											
GPR115	221393	broad.mit.edu	37	chr6	47684541	47684541	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgttcaattttgccacaGggttttttcatcctgctgtt	7	9	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	47684541	T	T	47684541	5	4	194	1	0	0	0	0	0	0	1	0	6697	1014	35	2	1954	2	GPR115	6	47684541	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	917779	47684541	123430526	558	156143											
PGK2	5232	broad.mit.edu	37	chr6	49754596	49754596	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaggctttctccacttctGcgcctacacagtccttcagg	7	16	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	49754596	C	C	49754596	3	2	194	1	0	0	0	0	1	0	0	0	11886	1319	46	4	952	4	PGK2	6	49754596	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2070055	49754596	121360471	559	156144											
DST	667	broad.mit.edu	37	chr6	56483314	56483314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggttttcaacctcacGcttctgggctatcagctcat	7	13	6	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	56483314	T	T	56483314	1	4	194	0	1	0	0	0	0	0	0	0	4823	1087	38	3		3	DST	6	56483314	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	6728718	56483314	114631753	560	156145											
EYS	346007	broad.mit.edu	37	chr6	65443453	65443453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcttcaagatgacaatgCagtgggacatgagacccaag	10	8	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	65443453	A	A	65443453	1	1	194	0	1	0	0	0	0	0	0	0	5375	725	25	3		3	EYS	6	65443453	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	8960139	65443453	105671614	561	156146											
BAI3	577	broad.mit.edu	37	chr6	69640530	69640530	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagggtccctcaggaacaAgctgatgctgctaaatttat	9	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	69640530	G	G	69640530	2	3	194	1	0	0	0	0	0	0	0	1	1305	69	3	5		5	BAI3	6	69640530	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	4197077	69640530	101474537	562	156147											
BAI3	577	broad.mit.edu	37	chr6	69758130	69758130	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctaacagacatcaactttCcaatgaaaggacggaaggga	9	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	69758130	G	G	69758130	3	3	194	1	0	0	0	0	1	0	0	0	1305	855	30	4	2207	4	BAI3	6	69758130	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	117600	69758130	101356937	563	156148											
COL9A1	1297	broad.mit.edu	37	chr6	71004033	71004033	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatgatcttatgccactggGaatcaaacaaggaggacaaa	9	8	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71004033	A	A	71004033	3	1	194	1	0	0	0	0	1	0	0	0	3739	1174	41	4	2444	4	COL9A1	6	71004033	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1245903	71004033	100111034	564	156149											
CD109	135228	broad.mit.edu	37	chr6	74446008	74446008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggagtaaagttctggaCctgggtgggaatgctgcaag	15	5	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74446008	A	A	74446008	1	1	194	0	1	0	0	0	0	0	0	0	2993	522	18	3		3	CD109	6	74446008	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3441975	74446008	96669059	565	156150											
KIAA1009	22832	broad.mit.edu	37	chr6	84859425	84859425	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtatcttccttgaccctAcagagcaaatgaaagaaaac	7	10	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	84859425	G	G	84859425	1	3	194	0	1	0	0	0	0	0	0	0	8273	406	14	5		5	KIAA1009	6	84859425	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	10413417	84859425	86255642	566	156151											
RNGTT	8732	broad.mit.edu	37	chr6	89638909	89638909	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cactgaagttttatatatttGattccttctttttctatgtc	4	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	89638909	C	C	89638909	3	2	194	1	0	0	0	0	1	0	0	0	13614	1280	45	4	1597	4	RNGTT	6	89638909	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4779484	89638909	81476158	567	156152											
GABRR1	2569	broad.mit.edu	37	chr6	89890150	89890150	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttgatgtaggagacgcgcGgcatggaggcattcacgccc	14	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	89890150	C	C	89890150	3	2	194	1	0	0	0	0	1	0	0	0	6236	1116	39	4	440	4	GABRR1	6	89890150	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	251241	89890150	81224917	568	156153											
UBE2J1	51465	broad.mit.edu	37	chr6	90039433	90039433	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatatgtattcgtttgccaGatatattcgtcggaatataa	7	5	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	90039433	A	A	90039433	2	1	194	1	0	0	0	0	0	0	0	1	16986	933	33	4		4	UBE2J1	6	90039433	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	149283	90039433	81075634	569	156154											
BACH2	60468	broad.mit.edu	37	chr6	90642323	90642323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgcccaggggggtccgGggggagccgcgcctggctcc	21	13	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	90642323	T	T	90642323	3	4	194	1	0	0	0	0	1	0	0	0	1289	1232	43	2	199	2	BACH2	6	90642323	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	602890	90642323	80472744	570	156155											
KIAA0776	23376	broad.mit.edu	37	chr6	96997630	96997631	+	Missense_Mutation	DNP	GG	TT	TT													attttcaacttcttagcttcGgatttaatgatggcagtaga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	96997631	TT	TT	96997630	3	4	194	1	0	0	0	0	1	0	0	0	8263	1103	39	1	1831	1	KIAA0776	6	96997630	Missense_Mutation	DNP	GG	TCGA-67-3771-01A-01D-1040-01	6355307	96997630	74117437	571	156156											
CCNC	892	broad.mit.edu	37	chr6	99997442	99997442	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccgttctgtaggtatcattCactatcctcctatagaaatg	6	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	99997442	T	T	99997442	2	4	194	1	0	0	0	0	0	0	0	1	2945	813	29	4		4	CCNC	6	99997442	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2999812	99997442	71117625	572	156157											
NR2E1	7101	broad.mit.edu	37	chr6	108502082	108502082	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacaggctttacaagagGtggtggctcgatttagacaa	11	6	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	108502082	T	T	108502082	3	4	194	1	0	0	0	0	1	0	0	0	10720	1261	44	3	837	3	NR2E1	6	108502082	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	8504640	108502082	62612985	573	156158											
NR2E1	7101	broad.mit.edu	37	chr6	108502647	108502647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcaagtgatccgcctgcCtcggcctcccaaagtgctgg	10	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108502647	A	A	108502647	1	1	194	0	1	0	0	0	0	0	0	0	10720	696	24	2		2	NR2E1	6	108502647	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	565	108502647	62612420	574	156159											
FIG4	9896	broad.mit.edu	37	chr6	110098260	110098260	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagacttttgccaacaagaaGaaggtatttttcttcctagt	8	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	110098260	A	A	110098260	3	1	194	1	0	0	0	0	1	0	0	0	5945	942	33	4	1948	4	FIG4	6	110098260	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1595613	110098260	61016807	575	156160											
SLC16A10	117247	broad.mit.edu	37	chr6	111527987	111527987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaaattactctcatcaccCgatgtctcattaaatgtact	3	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	111527987	T	T	111527987	1	4	194	0	1	0	0	0	0	0	0	0	14516	667	23	4		4	SLC16A10	6	111527987	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1429727	111527987	59587080	576	156161											
LAMA4	3910	broad.mit.edu	37	chr6	112506690	112506690	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggtccgcaggctgctgcAgcctgatatgaagggtgggg	19	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	112506690	T	T	112506690	1	4	194	0	1	0	0	0	0	0	0	0	8680	203	7	5		5	LAMA4	6	112506690	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	978703	112506690	58608377	577	156162											
RSPH4A	345895	broad.mit.edu	37	chr6	116949479	116949479	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggcatccaagtgattgatCtagtagaatccctatccaat	7	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	116949479	T	T	116949479	2	4	194	1	0	0	0	0	0	0	0	1	13817	912	32	4		4	RSPH4A	6	116949479	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	4442789	116949479	54165588	578	156163											
RFX6	222546	broad.mit.edu	37	chr6	117244400	117244400	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttttggtaacatacgtgCattataaaactgttcttaca	6	7	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	117244400	T	T	117244400	1	4	194	0	1	0	0	0	0	0	0	0	13375	725	25	4		4	RFX6	6	117244400	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	294921	117244400	53870667	579	156164											
NKAIN2	154215	broad.mit.edu	37	chr6	124676442	124676442	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctagtcctctgggttacGtggaatgtgtttgttatctg	13	6	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	124676442	T	T	124676442	2	4	194	1	0	0	0	0	0	0	0	1	10531	1132	40	3		3	NKAIN2	6	124676442	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	7432042	124676442	46438625	580	156165											
C6orf174	387104	broad.mit.edu	37	chr6	127796797	127796797	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagcgagtgggcgtgaGgcagcggatgttgcgcacct	19	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	127796797	A	A	127796797	3	1	194	1	0	0	0	0	1	0	0	0	2368	1000	35	4	477	4	C6orf174	6	127796797	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3120355	127796797	43318270	581	156166											
LAMA2	3908	broad.mit.edu	37	chr6	129649547	129649547	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgtgtgaccctgaaacatCgatatgccaggtagtcctct	9	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	129649547	T	T	129649547	3	4	194	1	0	0	0	0	1	0	0	0	8678	893	31	4	4415	4	LAMA2	6	129649547	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1852750	129649547	41465520	582	156167											
PDE7B	27115	broad.mit.edu	37	chr6	136512860	136512860	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcgcacacaacaaggcccAgtggaagagcctgttgccca	10	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	136512860	T	T	136512860	3	4	194	1	0	0	0	0	1	0	0	0	11746	188	7	5	1285	5	PDE7B	6	136512860	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	6863313	136512860	34602207	583	156168											
AIG1	51390	broad.mit.edu	37	chr6	143654305	143654305	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagaagcgaacttgagacTggcaaatgctgaagcatggg	13	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	143654305	C	C	143654305	1	2	194	0	1	0	0	0	0	0	0	0	429	1595	55	5		5	AIG1	6	143654305	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	7141445	143654305	27460762	584	156169											
SHPRH	257218	broad.mit.edu	37	chr6	146256096	146256096	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtgggtgacagcaggcCtgtctgagcctcagcaatgg	15	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	146256096	A	A	146256096	3	1	194	1	0	0	0	0	1	0	0	0	14404	680	24	2	2230	2	SHPRH	6	146256096	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2601791	146256096	24858971	585	156170											
SASH1	23328	broad.mit.edu	37	chr6	148846478	148846478	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatcgctctctgcacgttGgcagtaataattctgaccca	8	12	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	148846478	T	T	148846478	3	4	194	1	0	0	0	0	1	0	0	0	13960	1348	47	2	1303	2	SASH1	6	148846478	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2590382	148846478	22268589	586	156171											
MTHFD1L	25902	broad.mit.edu	37	chr6	151256055	151256055	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccaagagaaattctaaaGcaagaagagaaaagcatttc	7	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	151256055	A	A	151256055	1	1	194	0	1	0	0	0	0	0	0	0	10022	986	34	4		4	MTHFD1L	6	151256055	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2409577	151256055	19859012	587	156172											
C6orf211	79624	broad.mit.edu	37	chr6	151789697	151789697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataattctggatttgagcttGttacagatttaatattagcc	7	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	151789697	T	T	151789697	3	4	194	1	0	0	0	0	1	0	0	0	2377	1377	48	3	796	3	C6orf211	6	151789697	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	533642	151789697	19325370	588	156173											
CNKSR3	154043	broad.mit.edu	37	chr6	154735744	154735744	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaccttagaatgagctgAgggatttgaatgacgatgta	12	4	0	6			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	154735744	C	C	154735744	1	2	194	0	1	0	0	0	0	0	0	0	3640	319	11	5		5	CNKSR3	6	154735744	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	2946047	154735744	16379323	589	156174											
TIAM2	26230	broad.mit.edu	37	chr6	155500537	155500537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaaatagaagtctttcCactaaatgtttatgacgtgc	8	6	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	155500537	A	A	155500537	3	1	194	1	0	0	0	0	1	0	0	0	16014	594	21	2	2688	2	TIAM2	6	155500537	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	764793	155500537	15614530	590	156175											
SNX9	51429	broad.mit.edu	37	chr6	158342655	158342655	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccagtaatctcagaaagtGaagttttccagcagttccta	7	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	158342655	T	T	158342655	4	4	194	1	0	0	0	0	0	1	0	0	15023	1291	45	3	1080	3	SNX9	6	158342655	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2842118	158342655	12772412	591	156176											
IGF2R	3482	broad.mit.edu	37	chr6	160510217	160510217	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaagcctcaggaggtgcaGatggtgaatgggaccatcac	15	8	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	160510217	T	T	160510217	3	4	194	1	0	0	0	0	1	0	0	0	7646	933	33	3	6569	3	IGF2R	6	160510217	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2167562	160510217	10604850	592	156177											
LPA	4018	broad.mit.edu	37	chr6	160959096	160959096	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagagccctctgagctgGcactgccttgcttcactgac	9	17	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	160959096	A	A	160959096	1	1	194	0	1	0	0	0	0	0	0	0	8990	1218	42	4		4	LPA	6	160959096	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	448879	160959096	10155971	593	156178											
PDE10A	10846	broad.mit.edu	37	chr6	165895713	165895713	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttttgccataatctttctGatactttaatgtgttagagt	7	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	165895713	C	C	165895713	1	2	194	0	1	0	0	0	0	0	0	0	11724	1305	45	4		4	PDE10A	6	165895713	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4936617	165895713	5219354	594	156179											
THBS2	7058	broad.mit.edu	37	chr6	169632775	169632775	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacttgcttttccgtcttgGctgcttccaggccgaccccg	10	15	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	169632775	T	T	169632775	3	4	194	1	0	0	0	0	1	0	0	0	15977	1203	42	3	1646	3	THBS2	6	169632775	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3737062	169632775	1482292	595	156180											
SUN1	23353	broad.mit.edu	37	chr7	891533	891533	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagaaatggtccatttaggAgcttggttttcctaaaaaca	8	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	891533	T	T	891533	1	4	194	0	1	0	0	0	0	0	0	0	15509	319	11	5		5	SUN1	7	891533	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01		891533	158247130	596	156181											
INTS1	26173	broad.mit.edu	37	chr7	1523686	1523686	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctctgccgcatgcgcctcaCgtagcgtgagaagatggaca	13	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	1523686	G	G	1523686	3	3	194	1	0	0	0	0	1	0	0	0	7845	536	19	4	3286	4	INTS1	7	1523686	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	632153	1523686	157614977	597	156182											
NUDT1	4521	broad.mit.edu	37	chr7	2290724	2290724	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcattgagtggcgcagaGccgggtttcatctggaatta	16	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	2290724	T	T	2290724	1	4	194	0	1	0	0	0	0	0	0	0	10820	986	34	3		3	NUDT1	7	2290724	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	767038	2290724	156847939	598	156183											
SDK1	221935	broad.mit.edu	37	chr7	4116637	4116637	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgctttctaggctatcaGatctcttgggaagtgtacgg	12	7	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	4116637	C	C	4116637	3	2	194	1	0	0	0	0	1	0	0	0	14081	933	33	4	3100	4	SDK1	7	4116637	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1825913	4116637	155022026	599	156184											
C7orf26	79034	broad.mit.edu	37	chr7	6634024	6634024	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagttgctggtctactcactCacgacatctgtagttaagtg	9	9	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	6634024	G	G	6634024	1	3	194	0	1	0	0	0	0	0	0	0	2406	841	29	4		4	C7orf26	7	6634024	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2517387	6634024	152504639	600	156185											
COL28A1	340267	broad.mit.edu	37	chr7	7399921	7399921	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgccttcctcacattgtaGatacagtagcagattggcag	10	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	7399921	C	C	7399921	1	2	194	0	1	0	0	0	0	0	0	0	3718	957	33	4		4	COL28A1	7	7399921	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	765897	7399921	151738742	601	156186											
THSD7A	221981	broad.mit.edu	37	chr7	11485703	11485703	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaccatggctgttacatcTagatgtttccacaagcctgc	7	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	11485703	A	A	11485703	4	1	194	1	0	0	0	0	0	1	0	0	16002	1530	53	5	1984	5	THSD7A	7	11485703	Nonsense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	4085782	11485703	147652960	602	156187											
TMEM195	392636	broad.mit.edu	37	chr7	15433705	15433705	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgcaatttttagagaaatGaagaaaagagagaagaaaca	9	2	0	6			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	15433705	A	A	15433705	1	1	194	0	1	0	0	0	0	0	0	0	16240	1305	45	4		4	TMEM195	7	15433705	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3948002	15433705	143704958	603	156188											
DNAH11	8701	broad.mit.edu	37	chr7	21640205	21640205	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctaactactctccctttGaagaattaccttggtaatgt	5	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	21640205	A	A	21640205	1	1	194	0	1	0	0	0	0	0	0	0	4639	1305	45	4		4	DNAH11	7	21640205	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	6206500	21640205	137498458	604	156189											
DNAH11	8701	broad.mit.edu	37	chr7	21783936	21783936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacgaacacgcacattactAttgatgatatttcttttaac	4	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	21783936	G	G	21783936	1	3	194	0	1	0	0	0	0	0	0	0	4639	464	16	5		5	DNAH11	7	21783936	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	143731	21783936	137354727	605	156190											
CDCA7L	55536	broad.mit.edu	37	chr7	21947917	21947917	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttttctcattctgtaagCgtgcgctagaaaacaactgc	7	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	21947917	T	T	21947917	3	4	194	1	0	0	0	0	1	0	0	0	3121	768	27	4	880	4	CDCA7L	7	21947917	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	163981	21947917	137190746	606	156191											
CCDC126	90693	broad.mit.edu	37	chr7	23662184	23662184	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgtatcccttgtgtaactGattgtgtaatggctgaaatt	11	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	23662184	T	T	23662184	1	4	194	0	1	0	0	0	0	0	0	0	2788	1305	45	3		3	CCDC126	7	23662184	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1714267	23662184	135476479	607	156192											
OSBPL3	26031	broad.mit.edu	37	chr7	24911677	24911677	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctcagtccttccaccacTtcccagctgtcctgttccaa	4	20	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	24911677	A	A	24911677	3	1	194	1	0	0	0	0	1	0	0	0	11373	1606	56	5	2639	5	OSBPL3	7	24911677	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1249493	24911677	134226986	608	156193											
SNX10	29887	broad.mit.edu	37	chr7	26411973	26411973	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccaactgcactccaaatGgctaattaaaagtccaaatt	4	11	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26411973	T	T	26411973	1	4	194	0	1	0	0	0	0	0	0	0	14995	1363	47	2		2	SNX10	7	26411973	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1500296	26411973	132726690	609	156194											
HOXA4	3201	broad.mit.edu	37	chr7	27169157	27169157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtaggcggttcgagagCgcttaggctcccctccgtta	15	11	0	1	rs145032542	byFrequency	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	27169157	A	A	27169157	3	1	194	1	0	0	0	0	1	0	0	0	7361	768	27	3	316	3	HOXA4	7	27169157	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	757184	27169157	131969506	610	156195											
TAX1BP1	8887	broad.mit.edu	37	chr7	27825146	27825146	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatctattgcctgttgcttCaaaagaaatgaccccagaac	6	10	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	27825146	G	G	27825146	1	3	194	0	1	0	0	0	0	0	0	0	15713	841	29	4		4	TAX1BP1	7	27825146	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	655989	27825146	131313517	611	156196											
GARS	2617	broad.mit.edu	37	chr7	30649288	30649288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggaaatgatctatcccctCcagtgtcttttaacttaatg	6	10	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	30649288	A	A	30649288	3	1	194	1	0	0	0	0	1	0	0	0	6304	855	30	3	849	3	GARS	7	30649288	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2824142	30649288	128489375	612	156197											
INMT	11185	broad.mit.edu	37	chr7	30793439	30793439	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attccttccaagacatcactCtctccgactttaccgaccgc	4	17	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	30793439	G	G	30793439	3	3	194	1	0	0	0	0	1	0	0	0	7815	913	32	4	253	4	INMT	7	30793439	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	144151	30793439	128345224	613	156198											
GHRHR	2692	broad.mit.edu	37	chr7	31011704	31011704	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacactgaccactgcagcttCtccactgtaatggccatggg	10	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31011704	T	T	31011704	2	4	194	1	0	0	0	0	0	0	0	1	6437	912	32	4		4	GHRHR	7	31011704	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	218265	31011704	128126959	614	156199											
NEUROD6	63974	broad.mit.edu	37	chr7	31378209	31378209	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatggacttggaattatcaAgagtcccatgccctggggga	12	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	31378209	G	G	31378209	3	3	194	1	0	0	0	0	1	0	0	0	10446	72	3	5	343	5	NEUROD6	7	31378209	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	366505	31378209	127760454	615	156200											
PDE1C	5137	broad.mit.edu	37	chr7	31793152	31793152	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggcgtttaaaatgacgcAaaggaggcttgatgactggc	14	7	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31793152	T	T	31793152	4	4	194	1	0	0	0	0	0	1	0	0	11729	145	5	5		5	PDE1C	7	31793152	Nonsense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	414943	31793152	127345511	616	156201											
PDE1C	5137	broad.mit.edu	37	chr7	31867783	31867783	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaattgaatcaggcagagCcatgagcacaacatggcaga	10	8	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	31867783	G	G	31867783	1	3	194	0	1	0	0	0	0	0	0	0	11729	754	26	4		4	PDE1C	7	31867783	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	74631	31867783	127270880	617	156202											
PDE1C	5137	broad.mit.edu	37	chr7	31877577	31877577	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatttcaattaccaaggttCgaaactcccttttagagaca	5	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31877577	T	T	31877577	3	4	194	1	0	0	0	0	1	0	0	0	11729	884	31	4	947	4	PDE1C	7	31877577	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	9794	31877577	127261086	618	156203											
NPSR1	387129	broad.mit.edu	37	chr7	34791015	34791015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagttgttgtagactttaaGcaagagtggaacaaaggcag	13	4	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	34791015	T	T	34791015	1	4	194	0	1	0	0	0	0	0	0	0	10695	986	34	3		3	NPSR1	7	34791015	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2913438	34791015	124347648	619	156204											
NPSR1	387129	broad.mit.edu	37	chr7	34889224	34889224	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgttccgggagagaactgAgaggcatgagatgcagattc	15	7	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	34889224	T	T	34889224	3	4	194	1	0	0	0	0	1	0	0	0	10695	304	11	5	1107	5	NPSR1	7	34889224	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	98209	34889224	124249439	620	156205											
EEPD1	80820	broad.mit.edu	37	chr7	36194191	36194191	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcattggtcagtggtgtAggcgccaccaagctggagca	15	10	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	36194191	G	G	36194191	2	3	194	1	0	0	0	0	0	0	0	1	4972	407	15	5		5	EEPD1	7	36194191	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	1304967	36194191	122944472	621	156206											
ELMO1	9844	broad.mit.edu	37	chr7	37382167	37382167	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtctatgaaaattccaGtatagaaaggaaactgaaaa	7	5	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37382167	T	T	37382167	1	4	194	0	1	0	0	0	0	0	0	0	5107	1044	36	3		3	ELMO1	7	37382167	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1187976	37382167	121756496	622	156207											
AMPH	273	broad.mit.edu	37	chr7	38424385	38424385	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaaggtttaaaaacccCgtaactgagctccttcttgc	7	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	38424385	A	A	38424385	1	1	194	0	1	0	0	0	0	0	0	0	588	667	23	1		1	AMPH	7	38424385	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	1042218	38424385	120714278	623	156208											
VPS41	27072	broad.mit.edu	37	chr7	38834966	38834966	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caataacatccaagtgaaaaGatttgggtcctagaagccaa	8	8	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	38834966	C	C	38834966	1	2	194	0	1	0	0	0	0	0	0	0	17337	957	33	4		4	VPS41	7	38834966	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	410581	38834966	120303697	624	156209											
CDK13	8621	broad.mit.edu	37	chr7	40134118	40134118	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggtctaggaagcagttctGctccaccactagaacgacgt	10	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	40134118	C	C	40134118	3	2	194	1	0	0	0	0	1	0	0	0	3159	1319	46	4	4132	4	CDK13	7	40134118	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1299152	40134118	119004545	625	156210											
AEBP1	165	broad.mit.edu	37	chr7	44149840	44149840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgactactatgatggtgCgtggtgtgccgaggacgatg	17	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44149840	A	A	44149840	3	1	194	1	0	0	0	0	1	0	0	0	349	768	27	3	1337	3	AEBP1	7	44149840	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	4015722	44149840	114988823	626	156211											
MYL7	58498	broad.mit.edu	37	chr7	44180391	44180391	+	Intron	DEL	G	-	-													cgatacagctgaaggcctgtGggatgggggccttcaggtgg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	44180391	-	-	44180391	6	5	194	0	1	1	0	1	0	0	0	0	10147	1363	47	0		0	MYL7	7	44180391	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	30551	44180391	114958272	627	156212											
GCK	2645	broad.mit.edu	37	chr7	44184835	44184835	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatgaaggtgatctcgcagCtgggcgtcagcctgcgcacg	15	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	44184835	T	T	44184835	3	4	194	1	0	0	0	0	1	0	0	0	6355	797	28	4	103	4	GCK	7	44184835	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	4444	44184835	114953828	628	156213											
PKD1L1	168507	broad.mit.edu	37	chr7	47882629	47882629	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatatagctgatggcccggCagggaagcttcttgcagaaa	13	9	1	2	rs148252365		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	47882629	A	A	47882629	2	1	194	1	0	0	0	0	0	0	0	1	12059	697	25	3		3	PKD1L1	7	47882629	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	3697794	47882629	111256034	629	156214											
SUN3	256979	broad.mit.edu	37	chr7	48046759	48046759	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acccgcctagcctcatccagGacctctgtgtggtccgggtc	11	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	48046759	T	T	48046759	1	4	194	0	1	0	0	0	0	0	0	0	15511	1189	41	3		3	SUN3	7	48046759	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	164130	48046759	111091904	630	156215											
UPP1	7378	broad.mit.edu	37	chr7	48141413	48141413	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgggggtctctcttctctGgctgcagtttgtgtgtgttg	14	7	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	48141413	A	A	48141413	1	1	194	0	1	0	0	0	0	0	0	0	17138	1363	47	4		4	UPP1	7	48141413	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	94654	48141413	110997250	631	156216											
VWC2	375567	broad.mit.edu	37	chr7	49842403	49842403	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgtgtggaccctgtgtacGagcctgatcagtgctgtccc	13	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	49842403	T	T	49842403	4	4	194	1	0	0	0	0	0	1	0	0	17370	1059	37	3	799	3	VWC2	7	49842403	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1700990	49842403	109296260	632	156217											
COBL	23242	broad.mit.edu	37	chr7	51261234	51261234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcaagggcatggtgggatgGattcaggtggttctgaaggc	17	5	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51261234	T	T	51261234	3	4	194	1	0	0	0	0	1	0	0	0	3685	1174	41	3	3531	3	COBL	7	51261234	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1418831	51261234	107877429	633	156218											
POM121L12	285877	broad.mit.edu	37	chr7	53103547	53103547	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggtccctgactcagagCcatattcagtacttccagtg	9	12	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103547	T	T	53103547	2	4	194	1	0	0	0	0	0	0	0	1	12336	738	26	4		4	POM121L12	7	53103547	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1842313	53103547	106035116	634	156219											
POM121L12	285877	broad.mit.edu	37	chr7	53103731	53103731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagggttgcatgaaagggGggctgtgtcgtgcctggaac	20	6	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	53103731	T	T	53103731	3	4	194	1	0	0	0	0	1	0	0	0	12336	1232	43	2	369	2	POM121L12	7	53103731	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	184	53103731	106034932	635	156220											
EGFR	1956	broad.mit.edu	37	chr7	55259306	55259306	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttcgccagccataagtcctCgacgtggagaggctcagagc	13	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259306	G	G	55259306	1	3	194	0	1	0	0	0	0	0	0	0	5007	899	31	4		4	EGFR	7	55259306	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2155575	55259306	103879357	636	156221											
ZNF713	349075	broad.mit.edu	37	chr7	55990964	55990965	+	Missense_Mutation	DNP	GG	CC	CC													cgtgatgctggagaactacaGgaatctagttgcactgggtg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	CC	55990965	CC	CC	55990964	3	2	194	1	0	0	0	0	1	0	0	0	18245	1000	35	4	164	4	ZNF713	7	55990964	Missense_Mutation	DNP	GG	TCGA-67-3771-01A-01D-1040-01	731658	55990964	103147699	637	156222											
GUSB	2990	broad.mit.edu	37	chr7	65439604	65439604	+	Frame_Shift_Del	DEL	G	-	-													ttcctctgcataggggtagtGgctggtacggaaagcgttgg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	65439604	-	-	65439604	7	5	194	1	0	1	0	1	0	0	0	0	6967	1348	47	0	826	0	GUSB	7	65439604	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	9448640	65439604	93699059	638	156223											
POM121	9883	broad.mit.edu	37	chr7	72409924	72409924	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcaactccattggcagcaGacagggagtcccagggagaa	12	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	72409924	A	A	72409924	3	1	194	1	0	0	0	0	1	0	0	0	12334	942	33	4	644	4	POM121	7	72409924	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6970320	72409924	86728739	639	156224											
TRIM50	135892	broad.mit.edu	37	chr7	72734212	72734212	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acctttttctgctcctgcttCagctcagagatgagggctgc	10	12	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72734212	T	T	72734212	2	4	194	1	0	0	0	0	0	0	0	1	16651	813	29	4		4	TRIM50	7	72734212	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	324288	72734212	86404451	640	156225											
DTX2	113878	broad.mit.edu	37	chr7	76111922	76111922	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgacgatggctcctggacTgcctatgaagccagcgtctg	13	12	1	1	rs141436878		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	76111922	C	C	76111922	2	2	194	1	0	0	0	0	0	0	0	1	4834	1567	55	5		5	DTX2	7	76111922	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	3377710	76111922	83026741	641	156226											
SEMA3C	10512	broad.mit.edu	37	chr7	80546044	80546044	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgggaagatcctttcacAcagatagaacaaataaatac	8	8	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	80546044	G	G	80546044	2	3	194	1	0	0	0	0	0	0	0	1	14139	157	6	5		5	SEMA3C	7	80546044	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	4434122	80546044	78592619	642	156227											
TECPR1	25851	broad.mit.edu	37	chr7	97862337	97862337	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtcctgcccgcagctggGcaggaagccacggcgctccc	13	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	97862337	A	A	97862337	1	1	194	0	1	0	0	0	0	0	0	0	15865	1218	42	4		4	TECPR1	7	97862337	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	17316293	97862337	61276326	643	156228											
TRRAP	8295	broad.mit.edu	37	chr7	98509822	98509822	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctctttgcagctgaaaatGaacaaatgctgaaggtaaag	9	8	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	98509822	A	A	98509822	3	1	194	1	0	0	0	0	1	0	0	0	16726	1291	45	4	2251	4	TRRAP	7	98509822	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	647485	98509822	60628841	644	156229											
CYP3A7	1551	broad.mit.edu	37	chr7	99308411	99308411	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctgctggacatcagggtGagtggccagttcatatataa	11	7	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	99308411	T	T	99308411	3	4	194	1	0	0	0	0	1	0	0	0	4214	1290	45	3	557	3	CYP3A7	7	99308411	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	798589	99308411	59830252	645	156230											
CYP3A7	1551	broad.mit.edu	37	chr7	99313318	99313318	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaattacatggtgatttaCatctcaataaagcagttatt	6	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	99313318	T	T	99313318	1	4	194	0	1	0	0	0	0	0	0	0	4214	493	17	4		4	CYP3A7	7	99313318	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4907	99313318	59825345	646	156231											
ZSCAN21	7589	broad.mit.edu	37	chr7	99662084	99662084	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tataagtgtaaggagtgtggGaaagccttcaaccacagctc	11	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	99662084	A	A	99662084	2	1	194	1	0	0	0	0	0	0	0	1	18362	1161	41	4		4	ZSCAN21	7	99662084	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	348766	99662084	59476579	647	156232											
ACTL6B	51412	broad.mit.edu	37	chr7	100244460	100244460	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttccccgacaggccctgcaGagagaggtgactggggctgt	16	11	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	100244460	A	A	100244460	1	1	194	0	1	0	0	0	0	0	0	0	199	957	33	4		4	ACTL6B	7	100244460	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	582376	100244460	58894203	648	156233											
ZAN	7455	broad.mit.edu	37	chr7	100357998	100357998	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctctgtctgtctcttgcctCtgccctgccttccaggttgg	10	15	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	100357998	T	T	100357998	1	4	194	0	1	0	0	0	0	0	0	0	17640	928	32	4		4	ZAN	7	100357998	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	113538	100357998	58780665	649	156234											
MYL10	93408	broad.mit.edu	37	chr7	101265499	101265499	+	Intron	DEL	G	-	-													gcctgtgggaggtgagaggtGggggcagggaggataagaga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	101265499	-	-	101265499	6	5	194	0	1	1	0	1	0	0	0	0	10138	1363	47	0		0	MYL10	7	101265499	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	907501	101265499	57873164	650	156235											
CUX1	1523	broad.mit.edu	37	chr7	101671405	101671405	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagcaggtagcgccgctgCtgaagagtttccaaggagag	15	9	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	101671405	T	T	101671405	2	4	194	1	0	0	0	0	0	0	0	1	4097	796	28	4		4	CUX1	7	101671405	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	405906	101671405	57467258	651	156236											
CUX1	1523	broad.mit.edu	37	chr7	101916812	101916812	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atctcgctacctgcccaactGacttagcctctgcaaacact	5	16	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	101916812	C	C	101916812	1	2	194	0	1	0	0	0	0	0	0	0	4097	1305	45	4		4	CUX1	7	101916812	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	245407	101916812	57221851	652	156237											
CDHR3	222256	broad.mit.edu	37	chr7	105653116	105653116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttagcaggatccctctggcCgctgtgtttaaaatagccca	10	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	105653116	A	A	105653116	1	1	194	0	1	0	0	0	0	0	0	0	3150	667	23	1		1	CDHR3	7	105653116	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3736304	105653116	53485547	653	156238											
NRCAM	4897	broad.mit.edu	37	chr7	107816974	107816974	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatcgagtgctgaaatttaAattttttaaagtccaccgtg	7	6	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	107816974	T	T	107816974	3	4	194	1	0	0	0	0	1	0	0	0	10739	11	1	5	920	5	NRCAM	7	107816974	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	2163858	107816974	51321689	654	156239											
NRCAM	4897	broad.mit.edu	37	chr7	107820956	107820956	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaattgaaactgttgtttttCcagaaaattccgttggtata	7	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	107820956	T	T	107820956	1	4	194	0	1	0	0	0	0	0	0	0	10739	870	30	4		4	NRCAM	7	107820956	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3982	107820956	51317707	655	156240											
NRCAM	4897	broad.mit.edu	37	chr7	107850079	107850079	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaataaataatgatgttacAaaaaaggaatccacctatga	5	5	0	2	rs34741953		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	107850079	T	T	107850079	1	4	194	0	1	0	0	0	0	0	0	0	10739	145	5	5		5	NRCAM	7	107850079	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	29123	107850079	51288584	656	156241											
IMMP2L	83943	broad.mit.edu	37	chr7	111035084	111035084	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgcagctgttcgccacctGatgagtatcctttgacttca	9	11	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	111035084	T	T	111035084	1	4	194	0	1	0	0	0	0	0	0	0	7787	1305	45	3		3	IMMP2L	7	111035084	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3185005	111035084	48103579	657	156242											
IMMP2L	83943	broad.mit.edu	37	chr7	111161596	111161596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgaaaagtaagagttacCgaagggcaatcttgtctctt	9	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	111161596	A	A	111161596	1	1	194	0	1	0	0	0	0	0	0	0	7787	667	23	1		1	IMMP2L	7	111161596	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	126512	111161596	47977067	658	156243											
DOCK4	9732	broad.mit.edu	37	chr7	111379521	111379521	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtagaactcaagcttgaggTagatggacttggctggaaac	13	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	111379521	A	A	111379521	3	1	194	1	0	0	0	0	1	0	0	0	4729	1638	57	5	898	5	DOCK4	7	111379521	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	217925	111379521	47759142	659	156244											
PTPRZ1	5803	broad.mit.edu	37	chr7	121638051	121638051	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgattgtcgacatgcctactGataatcctggtaagtgccac	9	10	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	121638051	T	T	121638051	3	4	194	1	0	0	0	0	1	0	0	0	12922	1290	45	3	1269	3	PTPRZ1	7	121638051	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	10258530	121638051	37500612	660	156245											
FSCN3	29999	broad.mit.edu	37	chr7	127235724	127235726	+	In_Frame_Del	DEL	GCA	-	-													tgggccgcatctgggtggacGcagcagttccctgcctggag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	127235726	-	-	127235724	7	5	194	1	0	1	0	1	0	0	0	0	6129	1087	38	0	514	0	FSCN3	7	127235724	In_Frame_Del	DEL	GCA	TCGA-67-3771-01A-01D-1040-01	5597673	127235724	31902939	661	156246											
PAX4	5078	broad.mit.edu	37	chr7	127254020	127254020	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtctctggggctgcagCcgggagacaccatgggtaga	16	10	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	127254020	T	T	127254020	1	4	194	0	1	0	0	0	0	0	0	0	11575	754	26	4		4	PAX4	7	127254020	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	18296	127254020	31884643	662	156247											
SND1	27044	broad.mit.edu	37	chr7	127341074	127341074	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtgattttctggttatAggcttgggtcttaagccata	11	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	127341074	G	G	127341074	1	3	194	0	1	0	0	0	0	0	0	0	14958	435	15	5		5	SND1	7	127341074	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	87054	127341074	31797589	663	156248											
FLNC	2318	broad.mit.edu	37	chr7	128486266	128486267	+	Intron	DNP	GG	CT	CT													cagggctgggcaagtgggcaGggccgggatctgatgatatt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	CT	128486267	CT	CT	128486266	1	2	194	0	1	0	0	0	0	0	0	0	5993	1015	35	4		4	FLNC	7	128486266	Intron	DNP	GG	TCGA-67-3771-01A-01D-1040-01	1145192	128486266	30652397	664	156249											
NRF1	4899	broad.mit.edu	37	chr7	129357178	129357178	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtggcagcttctcaggaGatgcagcagggagctacagt	15	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	129357178	T	T	129357178	3	4	194	1	0	0	0	0	1	0	0	0	10741	933	33	3	1215	3	NRF1	7	129357178	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	870912	129357178	29781485	665	156250											
PARP12	64761	broad.mit.edu	37	chr7	139756470	139756470	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgatcaagtctatgatttCaacttatcctcacccccgca	4	14	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	139756470	T	T	139756470	1	4	194	0	1	0	0	0	0	0	0	0	11551	841	29	4		4	PARP12	7	139756470	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	10399292	139756470	19382193	666	156251											
PRSS1	5644	broad.mit.edu	37	chr7	142460350	142460350	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctaagtgtgaagcctccTaccctggaaagattaccagc	10	11	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	142460350	C	C	142460350	3	2	194	1	0	0	0	0	1	0	0	0	12720	1522	53	5	537	5	PRSS1	7	142460350	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	2703880	142460350	16678313	667	156252											
FAM131B	9715	broad.mit.edu	37	chr7	143056144	143056144	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccagacatttcccacatcCtccagaatatcacacaatac	4	15	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	143056144	G	G	143056144	1	3	194	0	1	0	0	0	0	0	0	0	5486	696	24	4		4	FAM131B	7	143056144	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	595794	143056144	16082519	668	156253											
EZH2	2146	broad.mit.edu	37	chr7	148513776	148513776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcttcatgacagactcacCggtgtttcctcttctttttc	7	12	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	148513776	T	T	148513776	3	4	194	1	0	0	0	0	1	0	0	0	5377	666	23	4	786	4	EZH2	7	148513776	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	5457632	148513776	10624887	669	156254											
ZNF786	136051	broad.mit.edu	37	chr7	148767407	148767407	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatgacactcttgctcaaaGaaggatacctgctcctaaaa	7	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	148767407	C	C	148767407	1	2	194	0	1	0	0	0	0	0	0	0	18287	957	33	4		4	ZNF786	7	148767407	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	253631	148767407	10371256	670	156255											
ZNF425	155054	broad.mit.edu	37	chr7	148802277	148802277	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcctgagttcggacttcCctctggacgagtttttgtac	10	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	148802277	T	T	148802277	3	4	194	1	0	0	0	0	1	0	0	0	18026	623	22	4	1576	4	ZNF425	7	148802277	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	34870	148802277	10336386	671	156256											
SSPO	23145	broad.mit.edu	37	chr7	149475833	149475833	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgggaagggtgagaattgTggctgcagggggcaagtgac	20	4	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	149475833	C	C	149475833	1	2	194	0	1	0	0	0	0	0	0	0	15307	1711	59	5		5	SSPO	7	149475833	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	673556	149475833	9662830	672	156257											
NOS3	4846	broad.mit.edu	37	chr7	150697444	150697444	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcaggcaaaaacctgaaccAgccccctaggcagccaggcc	10	17	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	150697444	G	G	150697444	1	3	194	0	1	0	0	0	0	0	0	0	10639	203	7	5		5	NOS3	7	150697444	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1221611	150697444	8441219	673	156258											
ABCB8	11194	broad.mit.edu	37	chr7	150739143	150739143	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacacagccgcccgggaagcGaatgctcacgagttcatcac	10	14	3	0	rs138648802	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	150739143	T	T	150739143	2	4	194	1	0	0	0	0	0	0	0	1	47	1045	37	3		3	ABCB8	7	150739143	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	41699	150739143	8399520	674	156259											
FASTK	10922	broad.mit.edu	37	chr7	150774063	150774063	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggccctcgagcccagcagCacccggccgtcccggcagaa	13	18	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	150774063	T	T	150774063	2	4	194	1	0	0	0	0	0	0	0	1	5741	697	25	4		4	FASTK	7	150774063	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	34920	150774063	8364600	675	156260											
FASTK	10922	broad.mit.edu	37	chr7	150774531	150774531	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaggaagggcccggcacctCatcctaatctgtcccagtct	10	15	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	150774531	T	T	150774531	1	4	194	0	1	0	0	0	0	0	0	0	5741	841	29	4		4	FASTK	7	150774531	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	468	150774531	8364132	676	156261											
XRCC2	7516	broad.mit.edu	37	chr7	152373293	152373293	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgcgccaggccgcggccGgggaggcgggagcatgcgca	19	14	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	152373293	T	T	152373293	1	4	194	0	1	0	0	0	0	0	0	0	17580	1131	39	1		1	XRCC2	7	152373293	5'Flank	SNP	G	TCGA-67-3771-01A-01D-1040-01	1598762	152373293	6765370	677	156262											
DPP6	1804	broad.mit.edu	37	chr7	154672477	154672477	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattggaatgctaaggttgcTttttatttgaagaggggttt	12	2	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	154672477	A	A	154672477	1	1	194	0	1	0	0	0	0	0	0	0	4770	1624	56	5		5	DPP6	7	154672477	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	2299184	154672477	4466186	678	156263											
DLGAP2	9228	broad.mit.edu	37	chr8	1626285	1626285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagccgccaggctgttgaGctcaggtgcgctcctgacag	14	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1626285	T	T	1626285	1	4	194	0	1	0	0	0	0	0	0	0	4600	986	34	3		3	DLGAP2	8	1626285	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01		1626285	144737737	679	156264											
MYOM2	9172	broad.mit.edu	37	chr8	2027039	2027039	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctcacgcctaagtatcCactgtgcccaggaagctttg	10	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	2027039	T	T	2027039	1	4	194	0	1	0	0	0	0	0	0	0	10186	609	21	4		4	MYOM2	8	2027039	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	400754	2027039	144336983	680	156265											
CSMD1	64478	broad.mit.edu	37	chr8	3265561	3265561	+	Frame_Shift_Del	DEL	C	-	-													ggacagttatgtcagaaatgCcatcatccttgaccgcgaga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	3265561	-	-	3265561	7	5	194	1	0	1	0	1	0	0	0	0	3978	739	26	0	8991	0	CSMD1	8	3265561	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	1238522	3265561	143098461	681	156266											
TUSC3	7991	broad.mit.edu	37	chr8	15517098	15517098	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatacttttgacctccaaaGaattggatttgcagctgagc	9	8	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	15517098	C	C	15517098	3	2	194	1	0	0	0	0	1	0	0	0	16904	942	33	4	523	4	TUSC3	8	15517098	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	12251537	15517098	130846924	682	156267											
ADAM7	8756	broad.mit.edu	37	chr8	24359024	24359024	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggagtggagaacaaaGgatactttggtgatgagcag	15	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	24359024	T	T	24359024	4	4	194	1	0	0	0	0	0	1	0	0	251	1001	35	2	2221	2	ADAM7	8	24359024	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	8841926	24359024	122004998	683	156268											
GTF2E2	2961	broad.mit.edu	37	chr8	30436705	30436705	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcagcacacatggggcaCagcacacgccctgaccagac	10	17	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30436705	T	T	30436705	1	4	194	0	1	0	0	0	0	0	0	0	6922	493	17	4		4	GTF2E2	8	30436705	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	6077681	30436705	115927317	684	156269											
TEX15	56154	broad.mit.edu	37	chr8	30704584	30704584	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtgatttatttttatcCgtatcaatttcacaatcaga	4	7	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30704584	T	T	30704584	2	4	194	1	0	0	0	0	0	0	0	1	15901	639	23	4		4	TEX15	8	30704584	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	267879	30704584	115659438	685	156270											
UNC5D	137970	broad.mit.edu	37	chr8	35541202	35541202	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgcatggcagccaacatCgtggctaagaggagaagcct	12	11	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	35541202	A	A	35541202	2	1	194	1	0	0	0	0	0	0	0	1	17121	874	31	3		3	UNC5D	8	35541202	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	4836618	35541202	110822820	686	156271											
KCNU1	157855	broad.mit.edu	37	chr8	36675196	36675196	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtctgtggaaacatcactGtggacagtgtgaccgctttc	12	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	36675196	T	T	36675196	3	4	194	1	0	0	0	0	1	0	0	0	8163	1377	48	3	1062	3	KCNU1	8	36675196	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1133994	36675196	109688826	687	156272											
ANK1	286	broad.mit.edu	37	chr8	41572403	41572403	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaagatgaacaacacaGgcaagagatggaatctgcaa	9	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	41572403	T	T	41572403	1	4	194	0	1	0	0	0	0	0	0	0	620	1015	35	2		2	ANK1	8	41572403	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4897207	41572403	104791619	688	156273											
MYST3	7994	broad.mit.edu	37	chr8	41834584	41834584	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctttctgattcgatattgCtcagagtagtccaccacttc	6	12	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	41834584	T	T	41834584	2	4	194	1	0	0	0	0	0	0	0	1	10198	796	28	4		4	MYST3	8	41834584	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	262181	41834584	104529438	689	156274											
IKBKB	3551	broad.mit.edu	37	chr8	42176906	42176906	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcatccagattgacctgGagaagtacagcgagcaaacc	10	12	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	42176906	T	T	42176906	4	4	194	1	0	0	0	0	0	1	0	0	7681	1175	41	3	1533	3	IKBKB	8	42176906	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	342322	42176906	104187116	690	156275											
CHRNB3	1142	broad.mit.edu	37	chr8	42585954	42585954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatcccagcactttgggaGgccgaggcgggtggatcatg	16	9	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	42585954	T	T	42585954	1	4	194	0	1	0	0	0	0	0	0	0	3423	1015	35	2		2	CHRNB3	8	42585954	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	409048	42585954	103778068	691	156276											
SNTG1	54212	broad.mit.edu	37	chr8	51363276	51363276	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattaatgtgagaaaatgtaGacatgaagaagtggtgagtt	12	2	0	5	rs145685246		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51363276	T	T	51363276	3	4	194	1	0	0	0	0	1	0	0	0	14988	942	33	3	372	3	SNTG1	8	51363276	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	8777322	51363276	95000746	692	156277											
SNTG1	54212	broad.mit.edu	37	chr8	51415461	51415461	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaagcatttataaagaataGataaaagtgctcacatcatt	6	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51415461	T	T	51415461	1	4	194	0	1	0	0	0	0	0	0	0	14988	957	33	3		3	SNTG1	8	51415461	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	52185	51415461	94948561	693	156278											
PXDNL	137902	broad.mit.edu	37	chr8	52370004	52370004	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactctaaagcagcaataTtagatcattttccagtgcag	6	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	52370004	C	C	52370004	1	2	194	0	1	0	0	0	0	0	0	0	12956	1508	52	5		5	PXDNL	8	52370004	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	954543	52370004	93994018	694	156279											
RGS20	8601	broad.mit.edu	37	chr8	54791616	54791616	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagctgctggcctacggaCcacacttcaagtagcacgga	11	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	54791616	A	A	54791616	1	1	194	0	1	0	0	0	0	0	0	0	13412	522	18	3		3	RGS20	8	54791616	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2421612	54791616	91572406	695	156280											
TMEM68	137695	broad.mit.edu	37	chr8	56675566	56675566	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttctttcttcattgccaTagcaggtcgctaattttgac	7	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	56675566	C	C	56675566	1	2	194	0	1	0	0	0	0	0	0	0	16320	1421	49	5		5	TMEM68	8	56675566	5'UTR	SNP	T	TCGA-67-3771-01A-01D-1040-01	1883950	56675566	89688456	696	156281											
SDR16C5	195814	broad.mit.edu	37	chr8	57218183	57218183	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaacatcatgaagtataacAactttggcatatacaagtac	6	7	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	57218183	C	C	57218183	3	2	194	1	0	0	0	0	1	0	0	0	14084	131	5	5	128	5	SDR16C5	8	57218183	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	542617	57218183	89145839	697	156282											
ASPH	444	broad.mit.edu	37	chr8	62559544	62559544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggggcttcccctgcccCtcctttcggccgctgaagac	11	17	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	62559544	A	A	62559544	1	1	194	0	1	0	0	0	0	0	0	0	1057	696	24	2		2	ASPH	8	62559544	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	5341361	62559544	83804478	698	156283											
EYA1	2138	broad.mit.edu	37	chr8	72123457	72123457	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaccacttttcttccaaaCctttgaattattctctcaaa	1	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	72123457	A	A	72123457	3	1	194	1	0	0	0	0	1	0	0	0	5371	506	18	3	154	3	EYA1	8	72123457	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	9563913	72123457	74240565	699	156284											
ZFHX4	79776	broad.mit.edu	37	chr8	77617456	77617456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgactctttgccggctgGctttgccttcttaaaaggaa	11	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	77617456	T	T	77617456	3	4	194	1	0	0	0	0	1	0	0	0	17761	1203	42	3	1135	3	ZFHX4	8	77617456	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	5493999	77617456	68746566	700	156285											
ZFHX4	79776	broad.mit.edu	37	chr8	77620118	77620118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatcaactggtggctcaCattaaagaagggggcaaaag	11	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77620118	A	A	77620118	3	1	194	1	0	0	0	0	1	0	0	0	17761	477	17	3	2934	3	ZFHX4	8	77620118	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2662	77620118	68743904	701	156286											
ZFHX4	79776	broad.mit.edu	37	chr8	77768223	77768223	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactctgcccgcttgtccatCagagatcacattttctccaa	5	14	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	77768223	T	T	77768223	2	4	194	1	0	0	0	0	0	0	0	1	17761	816	29	4		4	ZFHX4	8	77768223	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	148105	77768223	68595799	702	156287											
CA1	759	broad.mit.edu	37	chr8	86249393	86249393	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaattgtattgagtagaagtGaaaacaaacattagtgccta	8	4	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	86249393	C	C	86249393	1	2	194	0	1	0	0	0	0	0	0	0	2536	1305	45	4		4	CA1	8	86249393	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	8481170	86249393	60114629	703	156288											
PSKH2	85481	broad.mit.edu	37	chr8	87081589	87081589	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaattgagtcaagctgaagGgaacctcgaggcggtcttgg	14	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	87081589	A	A	87081589	1	1	194	0	1	0	0	0	0	0	0	0	12771	1247	43	4		4	PSKH2	8	87081589	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	832196	87081589	59282433	704	156289											
MMP16	4325	broad.mit.edu	37	chr8	89131063	89131063	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagagcatgtcccagttcaTggactgctacaagaaataag	9	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	89131063	A	A	89131063	3	1	194	1	0	0	0	0	1	0	0	0	9748	1464	51	5	1266	5	MMP16	8	89131063	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	2049474	89131063	57232959	705	156290											
MMP16	4325	broad.mit.edu	37	chr8	89339533	89339533	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaaaaaaaagtcctccGggtgggtaaggagcctgcag	12	9	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	89339533	T	T	89339533	1	4	194	0	1	0	0	0	0	0	0	0	9748	1131	39	1		1	MMP16	8	89339533	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	208470	89339533	57024489	706	156291											
RGS22	26166	broad.mit.edu	37	chr8	100994031	100994031	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aactcctgagctcaaacaatCtgcctgcctcagcctcccaa	5	17	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	100994031	G	G	100994031	1	3	194	0	1	0	0	0	0	0	0	0	13414	928	32	4		4	RGS22	8	100994031	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	11654498	100994031	45369991	707	156292											
SNX31	169166	broad.mit.edu	37	chr8	101601064	101601064	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agacagcatttcagcacagaGggtgttcaaggtctgccctg	12	10	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	101601064	A	A	101601064	1	1	194	0	1	0	0	0	0	0	0	0	15015	1015	35	4		4	SNX31	8	101601064	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	607033	101601064	44762958	708	156293											
KLF10	7071	broad.mit.edu	37	chr8	103664486	103664487	+	Frame_Shift_Del	DEL	TA	-	-													taacaggtctgttttcaacgTatttcttaaaatcagacttc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	103664487	-	-	103664486	7	5	194	1	0	1	0	1	0	0	0	0	8409	1638	57	0	1278	0	KLF10	8	103664486	Frame_Shift_Del	DEL	TA	TCGA-67-3771-01A-01D-1040-01	2063422	103664486	42699536	709	156294											
RIMS2	9699	broad.mit.edu	37	chr8	104780470	104780470	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtaaaatgaataatgggctCtttttcgtggtgccttggag	12	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	104780470	T	T	104780470	1	4	194	0	1	0	0	0	0	0	0	0	13479	928	32	4		4	RIMS2	8	104780470	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1115984	104780470	41583552	710	156295											
PKHD1L1	93035	broad.mit.edu	37	chr8	110412245	110412245	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccaacatccaaatagaaaGccattgaggcattgcattat	6	9	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	110412245	A	A	110412245	1	1	194	0	1	0	0	0	0	0	0	0	12067	986	34	4		4	PKHD1L1	8	110412245	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	5631775	110412245	35951777	711	156296											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457536	110457536	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttggacatcattctgttaGtgttgtggtgggaagtaaag	14	3	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	110457536	A	A	110457536	3	1	194	1	0	0	0	0	1	0	0	0	12067	1029	36	4	5588	4	PKHD1L1	8	110457536	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	45291	110457536	35906486	712	156297											
KCNV1	27012	broad.mit.edu	37	chr8	110986364	110986364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaaagctccagagggctgGgcacggcggccagggccccg	17	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	110986364	T	T	110986364	3	4	194	1	0	0	0	0	1	0	0	0	8164	1232	43	2	1260	2	KCNV1	8	110986364	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	528828	110986364	35377658	713	156298											
CSMD3	114788	broad.mit.edu	37	chr8	113323366	113323366	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgataatatatccatgagGtggggattctggtgtactac	11	6	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	113323366	C	C	113323366	3	2	194	1	0	0	0	0	1	0	0	0	3980	1261	44	4	3485	4	CSMD3	8	113323366	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2337002	113323366	33040656	714	156299											
CSMD3	114788	broad.mit.edu	37	chr8	113697836	113697836	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcaaagtcattgaaagaaaGatgtatccggctccctggat	10	8	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	113697836	C	C	113697836	3	2	194	1	0	0	0	0	1	0	0	0	3980	942	33	4	9070	4	CSMD3	8	113697836	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	374470	113697836	32666186	715	156300											
CSMD3	114788	broad.mit.edu	37	chr8	114185958	114185958	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttttcattttacctctacaGataggaacaggaaaatccca	6	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	114185958	A	A	114185958	2	1	194	1	0	0	0	0	0	0	0	1	3980	932	33	4		4	CSMD3	8	114185958	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	488122	114185958	32178064	716	156301											
TRPS1	7227	broad.mit.edu	37	chr8	116426548	116426548	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttggtggtgccttcgttttCtccttggaggcaccgtttgc	12	10	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	116426548	A	A	116426548	3	1	194	1	0	0	0	0	1	0	0	0	16718	912	32	3	300	3	TRPS1	8	116426548	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2240590	116426548	29937474	717	156302											
TRPS1	7227	broad.mit.edu	37	chr8	116599299	116599299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactgctgggggagggcccCagacttctctccgccagctg	13	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	116599299	A	A	116599299	3	1	194	1	0	0	0	0	1	0	0	0	16718	594	21	2	1267	2	TRPS1	8	116599299	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	172751	116599299	29764723	718	156303											
MED30	90390	broad.mit.edu	37	chr8	118552290	118552290	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtattttttccctgtgaAgaagattatttatctgcttt	6	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	118552290	G	G	118552290	1	3	194	0	1	0	0	0	0	0	0	0	9541	87	3	5		5	MED30	8	118552290	3'UTR	SNP	A	TCGA-67-3771-01A-01D-1040-01	1952991	118552290	27811732	719	156304											
ENPP2	5168	broad.mit.edu	37	chr8	120577193	120577193	+	Frame_Shift_Del	DEL	C	-	-													cctttggaaataattccagaCccctgtgcaaagacaaaaat							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	120577193	-	-	120577193	7	5	194	1	0	1	0	1	0	0	0	0	5172	507	18	0	469	0	ENPP2	8	120577193	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	2024903	120577193	25786829	720	156305											
COL14A1	7373	broad.mit.edu	37	chr8	121221975	121221976	+	Intron	INS	-	A	A													atataagtggctcaacatttINSaaaaaaaaatctcttgcagt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	121221976	A	A	121221975	6	5	194	0	1	1	1	0	0	0	0	0	3703	1769	61	0		0	COL14A1	8	121221975	Intron	INS	-	TCGA-67-3771-01A-01D-1040-01	644782	121221975	25142047	721	156306											
WDR67	93594	broad.mit.edu	37	chr8	124113096	124113096	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgagatttatcaatatgcAgacttgtaaacttctctttg	6	6	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	124113096	C	C	124113096	3	2	194	1	0	0	0	0	1	0	0	0	17445	188	7	5	907	5	WDR67	8	124113096	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	2891121	124113096	22250926	722	156307											
ZFAT	57623	broad.mit.edu	37	chr8	135620884	135620884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttataagcagaatccaaaCgaacaagcatgctgatcctt	7	9	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	135620884	A	A	135620884	1	1	194	0	1	0	0	0	0	0	0	0	17758	551	19	3		3	ZFAT	8	135620884	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	11507788	135620884	10743138	723	156308											
COL22A1	169044	broad.mit.edu	37	chr8	139763842	139763842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaggctttagaatctcacCctcattgaatagtgtaatac	6	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	139763842	A	A	139763842	1	1	194	0	1	0	0	0	0	0	0	0	3713	638	22	2		2	COL22A1	8	139763842	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4142958	139763842	6600180	724	156309											
DENND3	22898	broad.mit.edu	37	chr8	142190928	142190928	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggcgttcccacaagcGgtggacgtgctgctctacac	15	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	142190928	T	T	142190928	2	4	194	1	0	0	0	0	0	0	0	1	4472	1103	39	1		1	DENND3	8	142190928	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	2427086	142190928	4173094	725	156310											
BAI1	575	broad.mit.edu	37	chr8	143569926	143569926	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggacgtgggccccagagtcgGacggtcaccacccttctgga	14	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	143569926	T	T	143569926	1	4	194	0	1	0	0	0	0	0	0	0	1303	1189	41	3		3	BAI1	8	143569926	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1378998	143569926	2794096	726	156311											
BAI1	575	broad.mit.edu	37	chr8	143623974	143623974	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcccagcaccaagaacgAgaatgtcgccaccttgtctg	12	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	143623974	G	G	143623974	3	3	194	1	0	0	0	0	1	0	0	0	1303	304	11	5	4485	5	BAI1	8	143623974	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	54048	143623974	2740048	727	156312											
GML	2765	broad.mit.edu	37	chr8	143928027	143928027	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaactgaggaggagcttcCagaaggaactgtgaggctgg	16	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	143928027	T	T	143928027	3	4	194	1	0	0	0	0	1	0	0	0	6556	594	21	4	408	4	GML	8	143928027	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	304053	143928027	2435995	728	156313											
CYP11B1	1584	broad.mit.edu	37	chr8	143955876	143955876	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatgtcctcttgggttagTgtctccacctggaggtgttt	11	8	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	143955876	A	A	143955876	2	1	194	1	0	0	0	0	0	0	0	1	4178	1683	59	5		5	CYP11B1	8	143955876	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	27849	143955876	2408146	729	156314											
CYP11B2	1585	broad.mit.edu	37	chr8	143995833	143995833	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttctggatacagttgtcAcctgtccagggagcagggga	13	8	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	143995833	G	G	143995833	2	3	194	1	0	0	0	0	0	0	0	1	4179	173	6	5		5	CYP11B2	8	143995833	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	39957	143995833	2368189	730	156315											
C8orf31	286122	broad.mit.edu	37	chr8	144124453	144124453	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaccagaattcctgcaattCagtgaggcagctcttcaaaa	7	11	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	144124453	A	A	144124453	4	1	194	1	0	0	0	0	0	1	0	0	2446	838	29	3	37	3	C8orf31	8	144124453	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	128620	144124453	2239569	731	156316											
OPLAH	26873	broad.mit.edu	37	chr8	145108219	145108219	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccacctgggcacggaggtCcgacaggttgtcgtgcaggt	16	11	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	145108219	G	G	145108219	3	3	194	1	0	0	0	0	1	0	0	0	10970	855	30	4	1136	4	OPLAH	8	145108219	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	983766	145108219	1255803	732	156317											
DOCK8	81704	broad.mit.edu	37	chr9	286583	286583	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgatgacgacttggacgtGgtgttcacgccaaaggaatg	13	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	286583	C	C	286583	2	2	194	1	0	0	0	0	0	0	0	1	4733	1335	47	4		4	DOCK8	9	286583	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01		286583	140926848	733	156318											
DMRT2	10655	broad.mit.edu	37	chr9	1056458	1056458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtgcctacagccccagcCcagtggaaccaccaagcaag	9	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1056458	A	A	1056458	3	1	194	1	0	0	0	0	1	0	0	0	4626	623	22	2	938	2	DMRT2	9	1056458	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	769875	1056458	140156973	734	156319											
PTPRD	5789	broad.mit.edu	37	chr9	8483972	8483972	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggacacgttgtaaaagaaCtcggatagcaaaactgggag	12	6	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	8483972	T	T	8483972	1	4	194	0	1	0	0	0	0	0	0	0	12907	580	20	4		4	PTPRD	9	8483972	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	7427514	8483972	132729459	735	156320											
BNC2	54796	broad.mit.edu	37	chr9	16437681	16437681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaagtcaacccacaaaGcaaacttttctgccatgcaa	4	11	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	16437681	T	T	16437681	1	4	194	0	1	0	0	0	0	0	0	0	1481	986	34	3		3	BNC2	9	16437681	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	7953709	16437681	124775750	736	156321											
SLC24A2	25769	broad.mit.edu	37	chr9	19785946	19785946	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaccaacctttgcttgggCttctggtgctgtcaccttga	9	13	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	19785946	T	T	19785946	3	4	194	1	0	0	0	0	1	0	0	0	14580	797	28	4	1106	4	SLC24A2	9	19785946	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3348265	19785946	121427485	737	156322											
KIAA1797	54914	broad.mit.edu	37	chr9	20929236	20929236	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttttaaaaaatgtattaTtttgggtgtcggccggggtg	13	3	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20929236	A	A	20929236	1	1	194	0	1	0	0	0	0	0	0	0	8328	1508	52	5		5	KIAA1797	9	20929236	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1143290	20929236	120284195	738	156323											
KIAA1797	54914	broad.mit.edu	37	chr9	20929300	20929300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatagtgcttttatgataGgtatgcttccttcatgttta	8	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	20929300	T	T	20929300	1	4	194	0	1	0	0	0	0	0	0	0	8328	1015	35	2		2	KIAA1797	9	20929300	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	64	20929300	120284131	739	156324											
CDKN2A	1029	broad.mit.edu	37	chr9	21971203	21971203	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggcgctgcccatcatcAtgacctgccagagagaacag	11	14	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	21971203	C	C	21971203	3	2	194	1	0	0	0	0	1	0	0	0	3191	217	8	5	323	5	CDKN2A	9	21971203	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	1041903	21971203	119242228	740	156325											
ELAVL2	1993	broad.mit.edu	37	chr9	23693561	23693561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagttgggctcattactgCcatcttccgaggggatatct	11	9	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	23693561	A	A	23693561	1	1	194	0	1	0	0	0	0	0	0	0	5092	754	26	3		3	ELAVL2	9	23693561	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1722358	23693561	117519870	741	156326											
ELAVL2	1993	broad.mit.edu	37	chr9	23762245	23762245	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccatggcagcaattacCtgctaaaaacagagaaaaca	7	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	23762245	A	A	23762245	1	1	194	1	0	0	0	0	0	0	0	0	5092	696	24	2		2	ELAVL2	9	23762245	Translation_Start_Site	SNP	C	TCGA-67-3771-01A-01D-1040-01	68684	23762245	117451186	742	156327											
MOBKL2B	79817	broad.mit.edu	37	chr9	27358836	27358836	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctcttggagggtaatctCggacacttatttggtgacag	11	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	27358836	T	T	27358836	1	4	194	0	1	0	0	0	0	0	0	0	9779	899	31	4		4	MOBKL2B	9	27358836	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3596591	27358836	113854595	743	156328											
LINGO2	158038	broad.mit.edu	37	chr9	28150737	28150737	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaaaagaagtctgatttatCcagagtatcagaatcccttc	7	8	2	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	28150737	G	G	28150737	1	3	194	0	1	0	0	0	0	0	0	0	8888	870	30	4		4	LINGO2	9	28150737	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	791901	28150737	113062694	744	156329											
ACO1	48	broad.mit.edu	37	chr9	32408673	32408673	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagattaaaacgaatacctGagtgttctgctttgtgcaaa	9	6	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	32408673	C	C	32408673	1	2	194	0	1	0	0	0	0	0	0	0	146	1305	45	4		4	ACO1	9	32408673	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4257936	32408673	108804758	745	156330											
DNAI1	27019	broad.mit.edu	37	chr9	34506884	34506884	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggcaggtcagcaaccaGgctgggaggggtggggatgg	22	6	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	34506884	A	A	34506884	1	1	194	0	1	0	0	0	0	0	0	0	4649	1015	35	4		4	DNAI1	9	34506884	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2098211	34506884	106706547	746	156331											
UNC13B	10497	broad.mit.edu	37	chr9	35370326	35370326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctcaggccagccggagGgctctatggcattgacagca	12	13	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	35370326	T	T	35370326	3	4	194	1	0	0	0	0	1	0	0	0	17111	1232	43	2	1272	2	UNC13B	9	35370326	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	863442	35370326	105843105	747	156332											
TESK1	7016	broad.mit.edu	37	chr9	35606843	35606843	+	Frame_Shift_Del	DEL	G	-	-													ctatgcaccagtatatgaatGgggggacattggaacagctg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	35606843	-	-	35606843	7	5	194	1	0	1	0	1	0	0	0	0	15889	1348	47	0	414	0	TESK1	9	35606843	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	236517	35606843	105606588	748	156333											
POLR1E	64425	broad.mit.edu	37	chr9	37486630	37486630	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagtgacagtctagtcCcaccgtacattgtgtggtac	9	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37486630	T	T	37486630	3	4	194	1	0	0	0	0	1	0	0	0	12308	638	22	4		4	POLR1E	9	37486630	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1879787	37486630	103726801	749	156334											
TRPM3	80036	broad.mit.edu	37	chr9	73442630	73442630	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctcattctaagctctGgcccggtagaaataatggtt	8	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	73442630	T	T	73442630	1	4	194	0	1	0	0	0	0	0	0	0	16712	1363	47	2		2	TRPM3	9	73442630	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	35956000	73442630	67770801	750	156335											
RORB	6096	broad.mit.edu	37	chr9	77300554	77300554	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggggacaagagaactgtcTcatagtcatggaatgcatca	11	7	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77300554	A	A	77300554	1	1	194	0	1	0	0	0	0	0	0	0	13640	1566	54	5		5	RORB	9	77300554	3'UTR	SNP	T	TCGA-67-3771-01A-01D-1040-01	3857924	77300554	63912877	751	156336											
RORB	6096	broad.mit.edu	37	chr9	77300565	77300565	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaactgtctcatagtcatgGaatgcatcaccattaagaca	7	9	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77300565	A	A	77300565	1	1	194	0	1	0	0	0	0	0	0	0	13640	1189	41	4		4	RORB	9	77300565	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	11	77300565	63912866	752	156337											
FRMD3	257019	broad.mit.edu	37	chr9	85863297	85863297	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttgggttgtacactagttCagagatggttaaaggttctt	11	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	85863297	T	T	85863297	3	4	194	1	0	0	0	0	1	0	0	0	6110	835	29	4	467	4	FRMD3	9	85863297	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	8562732	85863297	55350134	753	156338											
SLC28A3	64078	broad.mit.edu	37	chr9	86902971	86902971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacacttacccactttcCattttcatggcattcttgag	5	12	3	1	rs148078245	byFrequency;by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	86902971	A	A	86902971	3	1	194	1	0	0	0	0	1	0	0	0	14647	594	21	2	831	2	SLC28A3	9	86902971	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1039674	86902971	54310460	754	156339											
NTRK2	4915	broad.mit.edu	37	chr9	87342555	87342555	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgatgctattaactctctCtttttcaatttagttgcacc	4	10	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	87342555	G	G	87342555	1	3	194	0	1	0	0	0	0	0	0	0	10802	928	32	4		4	NTRK2	9	87342555	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	439584	87342555	53870876	755	156340											
FAM75C1	441452	broad.mit.edu	37	chr9	90535364	90535364	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatctggcctccacccCaccaccaggcccaatgacca	7	19	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	90535364	G	G	90535364	3	3	194	1	0	0	0	0	1	0	0	0	5676	594	21	4	556	4	FAM75C1	9	90535364	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3192809	90535364	50678067	756	156341											
NXNL2	158046	broad.mit.edu	37	chr9	91150685	91150685	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggggggcgggggccgccCggcacgtctcccccatgttc	17	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	91150685	T	T	91150685	1	4	194	0	1	0	0	0	0	0	0	0	10884	667	23	4		4	NXNL2	9	91150685	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	615321	91150685	50062746	757	156342											
IARS	3376	broad.mit.edu	37	chr9	95015834	95015834	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaggggcagctccttccatCcaagtgcctccacttactaa	8	14	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	95015834	A	A	95015834	1	1	194	0	1	0	0	0	0	0	0	0	7543	870	30	3		3	IARS	9	95015834	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3865149	95015834	46197597	758	156343											
WNK2	65268	broad.mit.edu	37	chr9	96025976	96025976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccacgcgtgcgcgctcccGgcaggagagggccagccggc	17	16	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	96025976	T	T	96025976	3	4	194	1	0	0	0	0	1	0	0	0	17505	1116	39	1	3593	1	WNK2	9	96025976	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1010142	96025976	45187455	759	156344											
PTCH1	5727	broad.mit.edu	37	chr9	98242849	98242849	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccaaagggtcgaagtttgtCcaccgcaaaggaggtttacc	11	10	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	98242849	G	G	98242849	3	3	194	1	0	0	0	0	1	0	0	0	12836	856	30	4	3647	4	PTCH1	9	98242849	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2216873	98242849	42970582	760	156345											
HABP4	22927	broad.mit.edu	37	chr9	99227767	99227767	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaatttgaaagatatggtGggaatgacaaaatgtaagtt	12	1	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	99227767	T	T	99227767	3	4	194	1	0	0	0	0	1	0	0	0	7005	1348	47	2	671	2	HABP4	9	99227767	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	984918	99227767	41985664	761	156346											
ZNF782	158431	broad.mit.edu	37	chr9	99581246	99581246	+	Frame_Shift_Del	DEL	G	-	-													tgaaccttctgatgtacactGaaagttgactggtagctgaa					rs35483372		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	99581246	-	-	99581246	7	5	194	1	0	1	0	1	0	0	0	0	18284	1281	45	0	1044	0	ZNF782	9	99581246	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	353479	99581246	41632185	762	156347											
TSTD2	158427	broad.mit.edu	37	chr9	100372860	100372860	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcttaaaaaacctctagTtagggcccagaatgttccag	8	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	100372860	C	C	100372860	1	2	194	0	1	0	0	0	0	0	0	0	16801	1740	60	5		5	TSTD2	9	100372860	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	791614	100372860	40840571	763	156348											
ZNF189	7743	broad.mit.edu	37	chr9	104171922	104171922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaaattgcacacagcatgGatgcaataaatgtagagcaa	9	7	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	104171922	T	T	104171922	3	4	194	1	0	0	0	0	1	0	0	0	17880	1183	41	3	1882	3	ZNF189	9	104171922	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3799062	104171922	37041509	764	156349											
GRIN3A	116443	broad.mit.edu	37	chr9	104335781	104335781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatacggtaagctgacggGgtcccacattagacctagga	11	11	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	104335781	A	A	104335781	3	1	194	1	0	0	0	0	1	0	0	0	6849	1232	43	4	328	4	GRIN3A	9	104335781	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	163859	104335781	36877650	765	156350											
OR13C3	138803	broad.mit.edu	37	chr9	107298654	107298654	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acataacgatcaaatgccatCatgccaagaagcagacattc	6	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	107298654	A	A	107298654	3	1	194	1	0	0	0	0	1	0	0	0	11029	826	29	3	606	3	OR13C3	9	107298654	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2962873	107298654	33914777	766	156351											
DFNB31	25861	broad.mit.edu	37	chr9	117187363	117187364	+	Intron	INS	-	A	A													cagatcaaatgggcgtgggcINSaagggacagggtgacttggg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	117187364	A	A	117187363	6	5	194	0	1	1	1	0	0	0	0	0	4495	725	25	0		0	DFNB31	9	117187363	Intron	INS	-	TCGA-67-3771-01A-01D-1040-01	9888709	117187363	24026068	767	156352											
DFNB31	25861	broad.mit.edu	37	chr9	117228579	117228579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttctgcttcagagcctgGgtccacgccagtgatgtaaa	11	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	117228579	A	A	117228579	3	1	194	1	0	0	0	0	1	0	0	0	4495	1232	43	4	1832	4	DFNB31	9	117228579	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	41216	117228579	23984852	768	156353											
ASTN2	23245	broad.mit.edu	37	chr9	119567807	119567807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcttaaagtgatgctggCcagaataacaggtctctacc	10	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	119567807	A	A	119567807	1	1	194	0	1	0	0	0	0	0	0	0	1069	754	26	3		3	ASTN2	9	119567807	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2339228	119567807	21645624	769	156354											
MRRF	92399	broad.mit.edu	37	chr9	125084970	125084970	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtggcacattgggacttctCtccctcccccatctacacag	8	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	125084970	T	T	125084970	1	4	194	0	1	0	0	0	0	0	0	0	9944	928	32	4		4	MRRF	9	125084970	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	5517163	125084970	16128461	770	156355											
OR1L4	254973	broad.mit.edu	37	chr9	125486593	125486593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacttcttcatggcatttGggaacactgacagctacctg	9	10	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	125486593	A	A	125486593	3	1	194	1	0	0	0	0	1	0	0	0	11059	1348	47	4	327	4	OR1L4	9	125486593	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	401623	125486593	15726838	771	156356											
CRB2	286204	broad.mit.edu	37	chr9	126129407	126129407	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catagtgaagaggtgctgccCggcaaccccgtgagacctga	13	12	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	126129407	G	G	126129407	1	3	194	0	1	0	0	0	0	0	0	0	3881	667	23	4		4	CRB2	9	126129407	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	642814	126129407	15084024	772	156357											
LHX2	9355	broad.mit.edu	37	chr9	126783309	126783309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtttggcagtgggtggGgcgagtgtggatttggcatg	19	3	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	126783309	T	T	126783309	1	4	194	0	1	0	0	0	0	0	0	0	8843	1247	43	2		2	LHX2	9	126783309	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	653902	126783309	14430122	773	156358											
GOLGA1	2800	broad.mit.edu	37	chr9	127651448	127651448	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcattgactgagagtgcttCggcctgcaatgggccccgca	12	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	127651448	A	A	127651448	4	1	194	1	0	0	0	0	0	1	0	0	6615	893	31	3	592	3	GOLGA1	9	127651448	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	868139	127651448	13561983	774	156359											
GAPVD1	26130	broad.mit.edu	37	chr9	128111650	128111650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctgggtatccgtttcttGggggtgggttttgtttagag	15	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	128111650	T	T	128111650	1	4	194	0	1	0	0	0	0	0	0	0	6301	1363	47	2		2	GAPVD1	9	128111650	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	460202	128111650	13101781	775	156360											
ST6GALNAC6	30815	broad.mit.edu	37	chr9	130656766	130656766	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatgctgggcagtagggagGagctccccaaagcagctgcg	16	10	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	130656766	T	T	130656766	1	4	194	0	1	0	0	0	0	0	0	0	15346	1189	41	3		3	ST6GALNAC6	9	130656766	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2545116	130656766	10556665	776	156361											
COL5A1	1289	broad.mit.edu	37	chr9	137688241	137688241	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaactccggaggtgacggcCcagctggccctcctggtgaa	14	14	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	137688241	T	T	137688241	3	4	194	1	0	0	0	0	1	0	0	0	3728	623	22	4	2959	4	COL5A1	9	137688241	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	7031475	137688241	3525190	777	156362											
FCN2	2220	broad.mit.edu	37	chr9	137778453	137778453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcctgggcttctgagggGggtttgggaagtggagagag	22	4	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	137778453	T	T	137778453	1	4	194	0	1	0	0	0	0	0	0	0	5849	1247	43	2		2	FCN2	9	137778453	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	90212	137778453	3434978	778	156363											
OBP2A	29991	broad.mit.edu	37	chr9	138439695	138439695	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgagggcactgaagacCcatcttctctgtcatctaca	9	11	4	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	138439695	G	G	138439695	1	3	194	0	1	0	0	0	0	0	0	0	10905	638	22	4		4	OBP2A	9	138439695	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	661242	138439695	2773736	779	156364											
ARRDC1	92714	broad.mit.edu	37	chr9	140508500	140508500	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagcaacccaacgtggcctCtgccaccaagaagttctcct	7	16	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	140508500	G	G	140508500	3	3	194	1	0	0	0	0	1	0	0	0	986	913	32	4	470	4	ARRDC1	9	140508500	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2068805	140508500	704931	780	156365											
KLF6	1316	broad.mit.edu	37	chr10	3822343	3822343	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcttggccccggtgtgctttCggaagtgcctggttaactca	13	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	3822343	G	G	3822343	3	3	194	1	0	0	0	0	1	0	0	0	8421	884	31	4	104	4	KLF6	10	3822343	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01		3822343	131712404	781	156366											
GATA3	2625	broad.mit.edu	37	chr10	8111426	8111426	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaccctctcctctctccCcactctcagtctgcagccag	4	20	5	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	8111426	A	A	8111426	1	1	194	0	1	0	0	0	0	0	0	0	6317	638	22	2		2	GATA3	10	8111426	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4289083	8111426	127423321	782	156367											
USP6NL	9712	broad.mit.edu	37	chr10	11505373	11505373	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcggcaggacctgggacGgtaactgcgagcgcggggtg	18	11	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11505373	T	T	11505373	2	4	194	1	0	0	0	0	0	0	0	1	17214	1103	39	1		1	USP6NL	10	11505373	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	3393947	11505373	124029374	783	156368											
UPF2	26019	broad.mit.edu	37	chr10	11998304	11998304	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagttgtgtgacattaaaGgaagtcttgtttacctccat	8	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11998304	T	T	11998304	1	4	194	0	1	0	0	0	0	0	0	0	17130	1015	35	2		2	UPF2	10	11998304	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	492931	11998304	123536443	784	156369											
FRMD4A	55691	broad.mit.edu	37	chr10	13702486	13702486	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcctgttgtgcgacggTggccgaggagggagtccctt	19	9	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	13702486	A	A	13702486	2	1	194	1	0	0	0	0	0	0	0	1	6111	1683	59	5		5	FRMD4A	10	13702486	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	1704182	13702486	121832261	785	156370											
FAM107B	83641	broad.mit.edu	37	chr10	14563219	14563219	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttgggcgacttcttgGcctgttctcctgagattgcc	13	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	14563219	C	C	14563219	2	2	194	1	0	0	0	0	0	0	0	1	5436	1190	42	4		4	FAM107B	10	14563219	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	860733	14563219	120971528	786	156371											
FAM107B	83641	broad.mit.edu	37	chr10	14563800	14563800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtctggtaaatcctgccCgctccaacactccaacattc	5	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	14563800	A	A	14563800	1	1	194	0	1	0	0	0	0	0	0	0	5436	667	23	1		1	FAM107B	10	14563800	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	581	14563800	120970947	787	156372											
OLAH	55301	broad.mit.edu	37	chr10	15103747	15103747	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccttaaggcttcctggaaGagaaagcagagttgaagaac	11	8	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	15103747	T	T	15103747	3	4	194	1	0	0	0	0	1	0	0	0	10946	942	33	3	361	3	OLAH	10	15103747	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	539947	15103747	120431000	788	156373											
C10orf111	221060	broad.mit.edu	37	chr10	15138469	15138469	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggaaaaagcggggagaaGgaggaggctcattaggtcag	18	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	15138469	A	A	15138469	3	1	194	1	0	0	0	0	1	0	0	0	1594	1000	35	4	116	4	C10orf111	10	15138469	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	34722	15138469	120396278	789	156374											
GPR158	57512	broad.mit.edu	37	chr10	25861687	25861687	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtagtgttttggtttctcAttggctggacttcatctgtg	12	6	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	25861687	C	C	25861687	3	2	194	1	0	0	0	0	1	0	0	0	6728	217	8	5	1650	5	GPR158	10	25861687	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	10723218	25861687	109673060	790	156375											
GPR158	57512	broad.mit.edu	37	chr10	25887236	25887236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagaaaactgggcaccCacgaacatcgatgttacaga	10	9	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887236	A	A	25887236	3	1	194	1	0	0	0	0	1	0	0	0	6728	594	21	2	2723	2	GPR158	10	25887236	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	25549	25887236	109647511	791	156376											
MAP3K8	1326	broad.mit.edu	37	chr10	30728217	30728218	+	Intron	DEL	CG	-	-													aaacatggtacgtttctttcCgatcagttgggtgctatgtg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	30728218	-	-	30728217	6	5	194	0	1	1	0	1	0	0	0	0	9348	667	23	0		0	MAP3K8	10	30728217	Intron	DEL	CG	TCGA-67-3771-01A-01D-1040-01	4840981	30728217	104806530	792	156377											
LYZL2	119180	broad.mit.edu	37	chr10	30918542	30918542	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaggcagattcctggtGcctgccgcagaggctgactt	13	10	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30918542	T	T	30918542	2	4	194	1	0	0	0	0	0	0	0	1	9220	1306	46	3		3	LYZL2	10	30918542	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	190325	30918542	104616205	793	156378											
ARHGAP12	94134	broad.mit.edu	37	chr10	32103262	32103262	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtgaatccggtatctcctCttcaattccttcatcagttt	6	11	5	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	32103262	A	A	32103262	4	1	194	1	0	0	0	0	0	1	0	0	867	922	32	3	809	3	ARHGAP12	10	32103262	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1184720	32103262	103431485	794	156379											
FAM21C	253725	broad.mit.edu	37	chr10	46280389	46280389	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatactgggttgtgtgggaaAgattctgggaaaggaaacta	14	3	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46280389	T	T	46280389	1	4	194	0	1	0	0	0	0	0	0	0	5589	87	3	5		5	FAM21C	10	46280389	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	14177127	46280389	89254358	795	156380											
SYT15	83849	broad.mit.edu	37	chr10	46968904	46968904	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacgcacacAcacacacacacacacacaca	1	20	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	46968904	G	G	46968904	1	3	194	0	1	0	0	0	0	0	0	0	15590	174	6	5		5	SYT15	10	46968904	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	688515	46968904	88565843	796	156381											
GDF10	2662	broad.mit.edu	37	chr10	48428803	48428803	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcctccgggctttctgcatCgtcttctcgtcaaagtccag	8	14	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	48428803	T	T	48428803	2	4	194	1	0	0	0	0	0	0	0	1	6375	871	31	4		4	GDF10	10	48428803	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1459899	48428803	87105944	797	156382											
OGDHL	55753	broad.mit.edu	37	chr10	50943156	50943156	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggccctgtcactgtgtctGttttatcctggggccccaca	10	13	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	50943156	C	C	50943156	1	2	194	0	1	0	0	0	0	0	0	0	10935	1392	48	4		4	OGDHL	10	50943156	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	2514353	50943156	84591591	798	156383											
PCDH15	65217	broad.mit.edu	37	chr10	55892844	55892844	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactgcattgtttattcagTtgttgggtttacaggagaaa	11	4	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	55892844	C	C	55892844	1	2	194	0	1	0	0	0	0	0	0	0	11605	1740	60	5		5	PCDH15	10	55892844	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	4949688	55892844	79641903	799	156384											
BICC1	80114	broad.mit.edu	37	chr10	60566883	60566883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgagaagggccaatcatGtgtcctataagcccacaatg	10	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	60566883	T	T	60566883	3	4	194	1	0	0	0	0	1	0	0	0	1433	1377	48	3	2407	3	BICC1	10	60566883	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4674039	60566883	74967864	800	156385											
FAM13C	220965	broad.mit.edu	37	chr10	61028318	61028318	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccagggttcttacccggtAtttcttttcttgttcaaatt	6	11	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	61028318	G	G	61028318	3	3	194	1	0	0	0	0	1	0	0	0	5500	449	16	5	848	5	FAM13C	10	61028318	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	461435	61028318	74506429	801	156386											
CCDC6	8030	broad.mit.edu	37	chr10	61554281	61554281	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgtgaagacccggggaatTgtaataagacattccagctc	10	10	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61554281	A	A	61554281	3	1	194	1	0	0	0	0	1	0	0	0	2858	1812	63	5	252	5	CCDC6	10	61554281	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	525963	61554281	73980466	802	156387											
ZNF365	22891	broad.mit.edu	37	chr10	64159552	64159552	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgaacatcatctaaaagGgtgggtggtgctggaccaat	13	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	64159552	C	C	64159552	1	2	194	0	1	0	0	0	0	0	0	0	17995	1247	43	4		4	ZNF365	10	64159552	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	2605271	64159552	71375195	803	156388											
JMJD1C	221037	broad.mit.edu	37	chr10	64943192	64943192	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatttcaaagactacttaTtcttttaagtttacctgctt	3	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	64943192	C	C	64943192	1	2	194	0	1	0	0	0	0	0	0	0	8020	1508	52	5		5	JMJD1C	10	64943192	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	783640	64943192	70591555	804	156389											
REEP3	221035	broad.mit.edu	37	chr10	65357812	65357812	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtactatgagctgaagattGcttttgtcatatggctgctt	10	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	65357812	A	A	65357812	3	1	194	1	0	0	0	0	1	0	0	0	13314	1319	46	4	225	4	REEP3	10	65357812	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	414620	65357812	70176935	805	156390											
CTNNA3	29119	broad.mit.edu	37	chr10	67829219	67829219	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcagcaatcttttcttttTctgcctcaggcagttgagtc	8	11	5	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	67829219	A	A	67829219	3	1	194	1	0	0	0	0	1	0	0	0	4048	1783	62	5	697	5	CTNNA3	10	67829219	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	2471407	67829219	67705528	806	156391											
TET1	80312	broad.mit.edu	37	chr10	70406705	70406705	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacttctttactaaccctAcaaaaaacctagtgtctata	3	10	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	70406705	G	G	70406705	3	3	194	1	0	0	0	0	1	0	0	0	15891	391	14	5	4229	5	TET1	10	70406705	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	2577486	70406705	65128042	807	156392											
CCAR1	55749	broad.mit.edu	37	chr10	70515320	70515320	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actaattcatttcttgattaGaagtgttttactgatagttt	6	4	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	70515320	T	T	70515320	1	4	194	0	1	0	0	0	0	0	0	0	2756	957	33	3		3	CCAR1	10	70515320	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	108615	70515320	65019427	808	156393											
KIAA1274	27143	broad.mit.edu	37	chr10	72289613	72289613	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatacccctgagccatcTgagtgaccttcctgtggctc	9	13	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	72289613	A	A	72289613	1	1	194	0	1	0	0	0	0	0	0	0	8290	1595	55	5		5	KIAA1274	10	72289613	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1774293	72289613	63245134	809	156394											
ADAMTS14	140766	broad.mit.edu	37	chr10	72520070	72520070	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggccacctgactgacagGcatccccacgttgcttccat	11	15	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72520070	T	T	72520070	1	4	194	0	1	0	0	0	0	0	0	0	259	1218	42	3		3	ADAMTS14	10	72520070	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	230457	72520070	63014677	810	156395											
C10orf27	219793	broad.mit.edu	37	chr10	72541683	72541683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaatgcccggcggatccGctcgaaatccacaatccctg	8	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72541683	T	T	72541683	2	4	194	1	0	0	0	0	0	0	0	1	1611	1086	38	3		3	C10orf27	10	72541683	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	21613	72541683	62993064	811	156396											
CDH23	64072	broad.mit.edu	37	chr10	73375217	73375217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccccagctccatgcccccCtgccctgtgcctggtcacac	8	22	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	73375217	A	A	73375217	1	1	194	0	1	0	0	0	0	0	0	0	3138	696	24	2		2	CDH23	10	73375217	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	833534	73375217	62159530	812	156397											
CDH23	64072	broad.mit.edu	37	chr10	73501649	73501649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaccacctggtggccactGtggaggacgagggcacccca	13	14	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	73501649	T	T	73501649	3	4	194	1	0	0	0	0	1	0	0	0	3138	1377	48	3	5307	3	CDH23	10	73501649	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	126432	73501649	62033098	813	156398											
TTC18	118491	broad.mit.edu	37	chr10	75095212	75095212	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactgcagaaggatcaaggTagcagcgactttccaagtcc	10	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	75095212	C	C	75095212	3	2	194	1	0	0	0	0	1	0	0	0	16811	1638	57	5	2586	5	TTC18	10	75095212	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1593563	75095212	60439535	814	156399											
C10orf11	83938	broad.mit.edu	37	chr10	77818331	77818331	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtctaagttccagaagaccgGatggtgtggattcttgaaga	13	6	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77818331	A	A	77818331	1	1	194	0	1	0	0	0	0	0	0	0	1593	1189	41	4		4	C10orf11	10	77818331	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2723119	77818331	57716416	815	156400											
KCNMA1	3778	broad.mit.edu	37	chr10	78651442	78651442	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctcctccggtcaccagggtCcgtatcagggtgaggatatt	13	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	78651442	G	G	78651442	2	3	194	1	0	0	0	0	0	0	0	1	8143	842	30	4		4	KCNMA1	10	78651442	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	833111	78651442	56883305	816	156401											
RGR	5995	broad.mit.edu	37	chr10	86007641	86007641	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggtgggcaggctaaaatGggctgaattccagattgatt	15	5	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	86007641	C	C	86007641	1	2	194	0	1	0	0	0	0	0	0	0	13400	1363	47	4		4	RGR	10	86007641	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	7356199	86007641	49527106	817	156402											
FAM190B	54462	broad.mit.edu	37	chr10	86185688	86185688	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagatttcatttgctgtcctCtgattttgaattataattct	5	6	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	86185688	T	T	86185688	1	4	194	0	1	0	0	0	0	0	0	0	5569	928	32	4		4	FAM190B	10	86185688	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	178047	86185688	49349059	818	156403											
GRID1	2894	broad.mit.edu	37	chr10	87407335	87407335	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgggacttgcagcgcctcAttcaattacaggtgtgtttt	11	8	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	87407335	C	C	87407335	1	2	194	0	1	0	0	0	0	0	0	0	6837	232	8	5		5	GRID1	10	87407335	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1221647	87407335	48127412	819	156404											
LDB3	11155	broad.mit.edu	37	chr10	88446771	88446771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacccatgtaaccgccacCtgttgcccttttctcctccc	5	20	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	88446771	A	A	88446771	1	1	194	0	1	0	0	0	0	0	0	0	8769	696	24	2		2	LDB3	10	88446771	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1039436	88446771	47087976	820	156405											
LDB3	11155	broad.mit.edu	37	chr10	88447080	88447080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctccagagcccgagggGtatgggccattgggcaccat	15	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	88447080	T	T	88447080	1	4	194	0	1	0	0	0	0	0	0	0	8769	1276	44	3		3	LDB3	10	88447080	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	309	88447080	47087667	821	156406											
GLUD1	2746	broad.mit.edu	37	chr10	88820283	88820283	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtgccggtagctaaaaGccattaaattatgtacctta	7	9	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	88820283	A	A	88820283	1	1	194	0	1	0	0	0	0	0	0	0	6540	986	34	4		4	GLUD1	10	88820283	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	373203	88820283	46714464	822	156407											
CYP26C1	340665	broad.mit.edu	37	chr10	94828349	94828349	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaactggccacacccgcCttccccgccatgcagacggt	11	17	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	94828349	T	T	94828349	2	4	194	1	0	0	0	0	0	0	0	1	4190	668	24	4		4	CYP26C1	10	94828349	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	6008066	94828349	40706398	823	156408											
CYP26A1	1592	broad.mit.edu	37	chr10	94836200	94836200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctctcccatcatggggCcctttgggtttagtctccac	9	14	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	94836200	A	A	94836200	1	1	194	0	1	0	0	0	0	0	0	0	4188	754	26	3		3	CYP26A1	10	94836200	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	7851	94836200	40698547	824	156409											
PDE6C	5146	broad.mit.edu	37	chr10	95399999	95399999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtatttaatttaaaataCtgtgtgattctgtggctctg	10	4	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	95399999	A	A	95399999	1	1	194	0	1	0	0	0	0	0	0	0	11741	580	20	3		3	PDE6C	10	95399999	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	563799	95399999	40134748	825	156410											
HELLS	3070	broad.mit.edu	37	chr10	96334089	96334089	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctttctgatttctttacCctgaatttttagaagtagaa	6	6	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	96334089	G	G	96334089	1	3	194	0	1	0	0	0	0	0	0	0	7113	638	22	4		4	HELLS	10	96334089	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	934090	96334089	39200658	826	156411											
CYP2C18	1562	broad.mit.edu	37	chr10	96447589	96447589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagcccattgtggtgttGcatggatatgaagcagtgaa	13	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	96447589	T	T	96447589	3	4	194	1	0	0	0	0	1	0	0	0	4198	1310	46	3	237	3	CYP2C18	10	96447589	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	113500	96447589	39087158	827	156412											
CYP2C18	1562	broad.mit.edu	37	chr10	96454680	96454680	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccaatcctttagcctcacCctgtgatcccactttcatcc	3	17	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	96454680	T	T	96454680	3	4	194	1	0	0	0	0	1	0	0	0	4198	623	22	4	502	4	CYP2C18	10	96454680	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	7091	96454680	39080067	828	156413											
SLIT1	6585	broad.mit.edu	37	chr10	98807550	98807550	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacttgtggggacagaccaCgtcgctgttgcactcgctgt	13	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	98807550	T	T	98807550	3	4	194	1	0	0	0	0	1	0	0	0	14853	536	19	4	3161	4	SLIT1	10	98807550	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2352870	98807550	36727197	829	156414											
ZDHHC16	84287	broad.mit.edu	37	chr10	99212032	99212036	+	Frame_Shift_Del	DEL	CCCAC	-	-													atcaccactccgcctgggtaCccaccccaggtgggtcctca							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	99212036	-	-	99212032	7	5	194	1	0	1	0	1	0	0	0	0	17732	518	18	0	435	0	ZDHHC16	10	99212032	Frame_Shift_Del	DEL	CCCAC	TCGA-67-3771-01A-01D-1040-01	404482	99212032	36322715	830	156415											
PYROXD2	84795	broad.mit.edu	37	chr10	100152098	100152098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcttttgcatctcacacCctgatgcaatcctggctccc	7	15	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	100152098	A	A	100152098	1	1	194	0	1	0	0	0	0	0	0	0	12975	638	22	2		2	PYROXD2	10	100152098	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	940066	100152098	35382649	831	156416											
PKD2L1	9033	broad.mit.edu	37	chr10	102052901	102052901	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccccagccccacccatagTatgccaggcttccaaggata	8	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	102052901	C	C	102052901	1	2	194	0	1	0	0	0	0	0	0	0	12062	1653	57	5		5	PKD2L1	10	102052901	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1900803	102052901	33481846	832	156417											
PAX2	5076	broad.mit.edu	37	chr10	102506214	102506214	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctttctctccctcgcccGgtgtttctaatgcctccagt	7	15	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	102506214	T	T	102506214	1	4	194	0	1	0	0	0	0	0	0	0	11573	1131	39	1		1	PAX2	10	102506214	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	453313	102506214	33028533	833	156418											
PAX2	5076	broad.mit.edu	37	chr10	102509593	102509593	+	Frame_Shift_Del	DEL	C	-	-													gcagcgcatcgtggagctggCccaccagggtgtgcggccct							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	102509593	-	-	102509593	7	5	194	1	0	1	0	1	0	0	0	0	11573	739	26	0	140	0	PAX2	10	102509593	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	3379	102509593	33025154	834	156419											
PDZD7	79955	broad.mit.edu	37	chr10	102780323	102780323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagagagccgggccccaCcctaaggcctcagccctttc	9	18	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	102780323	A	A	102780323	1	1	194	0	1	0	0	0	0	0	0	0	11798	522	18	3		3	PDZD7	10	102780323	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	270730	102780323	32754424	835	156420											
BTRC	8945	broad.mit.edu	37	chr10	103310676	103310676	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcgattatgtacataacaCtgtgggtaggagacgggata	12	5	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	103310676	G	G	103310676	1	3	194	0	1	0	0	0	0	0	0	0	1579	580	20	4		4	BTRC	10	103310676	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	530353	103310676	32224071	836	156421											
LDB1	8861	broad.mit.edu	37	chr10	103870845	103870845	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtccagttctgaagcCgtttgttaagctcaaatatt	7	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	103870845	A	A	103870845	3	1	194	1	0	0	0	0	1	0	0	0	8767	652	23	1	1037	1	LDB1	10	103870845	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	560169	103870845	31663902	837	156422											
AS3MT	57412	broad.mit.edu	37	chr10	104650268	104650268	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattgagactaaagttgcaActcttagtatttttttttat	5	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	104650268	G	G	104650268	1	3	194	0	1	0	0	0	0	0	0	0	1009	58	2	5		5	AS3MT	10	104650268	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	779423	104650268	30884479	838	156423											
SORCS1	114815	broad.mit.edu	37	chr10	108339277	108339277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgagcagagaactgggCaggtgagactctatgagagg	15	5	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	108339277	A	A	108339277	1	1	194	0	1	0	0	0	0	0	0	0	15044	725	25	3		3	SORCS1	10	108339277	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3689009	108339277	27195470	839	156424											
ADD3	120	broad.mit.edu	37	chr10	111879159	111879159	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatttttgttgctgctgctGttgatgaaaacagtgtgagc	11	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	111879159	A	A	111879159	1	1	194	0	1	0	0	0	0	0	0	0	306	1392	48	4		4	ADD3	10	111879159	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3539882	111879159	23655588	840	156425											
ADRA2A	150	broad.mit.edu	37	chr10	112838147	112838147	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggcgctcgacgtgctcttCtgcacgtcgtccatcgtgca	11	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	112838147	G	G	112838147	3	3	194	1	0	0	0	0	1	0	0	0	337	912	32	4	395	4	ADRA2A	10	112838147	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	958988	112838147	22696600	841	156426											
KCNK18	338567	broad.mit.edu	37	chr10	118960610	118960610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactatccctttcactggggCggggcttgtctttaccagca	11	12	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	118960610	A	A	118960610	1	1	194	0	1	0	0	0	0	0	0	0	8135	783	27	3		3	KCNK18	10	118960610	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	6122463	118960610	16574137	842	156427											
PDZD8	118987	broad.mit.edu	37	chr10	119043108	119043108	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccaactcctgatcaatttCattctgtagcttatccaaca	3	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	119043108	T	T	119043108	3	4	194	1	0	0	0	0	1	0	0	0	11799	835	29	4	332	4	PDZD8	10	119043108	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	82498	119043108	16491639	843	156428											
GRK5	2869	broad.mit.edu	37	chr10	121203352	121203352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccccagaacagcaaacaGgctgaagggacaggggtctg	14	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	121203352	T	T	121203352	1	4	194	0	1	0	0	0	0	0	0	0	6858	1015	35	2		2	GRK5	10	121203352	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2160244	121203352	14331395	844	156429											
PPAPDC1A	196051	broad.mit.edu	37	chr10	122263423	122263423	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaatcagataacataccTacccgcctcatgtttgtaag	7	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	122263423	A	A	122263423	2	1	194	1	0	0	0	0	0	0	0	1	12389	1509	53	5		5	PPAPDC1A	10	122263423	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	1060071	122263423	13271324	845	156430											
DMBT1	1755	broad.mit.edu	37	chr10	124377590	124377590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtgacaggtgtcgaggccGagtggaggtcctataccaag	16	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	124377590	T	T	124377590	3	4	194	1	0	0	0	0	1	0	0	0	4617	1058	37	3	4712	3	DMBT1	10	124377590	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2114167	124377590	11157157	846	156431											
MKI67	4288	broad.mit.edu	37	chr10	129903116	129903116	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctcatcagtcgtgggctTgtcagtgcctggtgtctgga	13	9	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	129903116	A	A	129903116	4	1	194	1	0	0	0	0	0	1	0	0	9691	1821	63	5	2794	5	MKI67	10	129903116	Nonsense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	5525526	129903116	5631631	847	156432											
IFITM1	8519	broad.mit.edu	37	chr11	315104	315104	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagataatacaggaaaaacgGggttactagtagccgcccat	10	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	315104	T	T	315104	2	4	194	1	0	0	0	0	0	0	0	1	7596	1219	43	2		2	IFITM1	11	315104	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01		315104	134691412	848	156433											
MUC6	4588	broad.mit.edu	37	chr11	1024787	1024787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccccgccccttcccccGcccccaccggacatttgtgg	8	22	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1024787	T	T	1024787	1	4	194	0	1	0	0	0	0	0	0	0	10074	1102	38	3		3	MUC6	11	1024787	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	709683	1024787	133981729	849	156434											
MUC6	4588	broad.mit.edu	37	chr11	1025314	1025314	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccccgagctgcacgtgGggctcctccccggtgaccgt	13	17	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1025314	T	T	1025314	2	4	194	1	0	0	0	0	0	0	0	1	10074	1219	43	2		2	MUC6	11	1025314	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	527	1025314	133981202	850	156435											
MUC6	4588	broad.mit.edu	37	chr11	1033117	1033117	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcggtgtggggctaccccgtCgtccctgagggcgccgctca	15	15	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1033117	T	T	1033117	1	4	194	0	1	0	0	0	0	0	0	0	10074	899	31	4		4	MUC6	11	1033117	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	7803	1033117	133973399	851	156436											
MUC5B	727897	broad.mit.edu	37	chr11	1155221	1155221	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgagtggagcccggagGcctgggtggggaagggtcat	22	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1155221	A	A	1155221	1	1	194	0	1	0	0	0	0	0	0	0	10073	1218	42	4		4	MUC5B	11	1155221	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	122104	1155221	133851295	852	156437											
MUC5B	727897	broad.mit.edu	37	chr11	1263316	1263316	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacaggcacagccagcaccGcttccaaagagccgctgacc	10	17	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1263316	T	T	1263316	3	4	194	1	0	0	0	0	1	0	0	0	10073	1087	38	3	5337	3	MUC5B	11	1263316	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	108095	1263316	133743200	853	156438											
MUC5B	727897	broad.mit.edu	37	chr11	1271377	1271377	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaccacctggatcctcacaGagctgaccacaacagccact	8	16	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1271377	A	A	1271377	3	1	194	1	0	0	0	0	1	0	0	0	10073	943	33	4	13398	4	MUC5B	11	1271377	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	8061	1271377	133735139	854	156439											
TNNI2	7136	broad.mit.edu	37	chr11	1862435	1862435	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaagaaggaggacacagagAaggtgcgtgccacgggggga	18	7	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	1862435	T	T	1862435	4	4	194	1	0	0	0	0	0	1	0	0	16450	247	9	5	488	5	TNNI2	11	1862435	Nonsense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	591058	1862435	133144081	855	156440											
NUP98	4928	broad.mit.edu	37	chr11	3774423	3774423	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaatgtcttataaacgcaActggaaaaacgaaaaggtag	11	5	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	3774423	G	G	3774423	1	3	194	0	1	0	0	0	0	0	0	0	10868	58	2	5		5	NUP98	11	3774423	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	1911988	3774423	131232093	856	156441											
OR51E1	143503	broad.mit.edu	37	chr11	4674254	4674254	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaccccttcctgtcttcatCaagcagctgcccttctgccg	7	18	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	4674254	G	G	4674254	3	3	194	1	0	0	0	0	1	0	0	0	11188	816	29	4	500	4	OR51E1	11	4674254	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	899831	4674254	130332262	857	156442											
OR51G2	81282	broad.mit.edu	37	chr11	4936270	4936270	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctatacccactgtagagacGatgacaaacatgccgtagat	8	10	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	4936270	A	A	4936270	2	1	194	1	0	0	0	0	0	0	0	1	11193	1048	37	4		4	OR51G2	11	4936270	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	262016	4936270	130070246	858	156443											
OR51B6	390058	broad.mit.edu	37	chr11	5373536	5373536	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataggtttggaaagcatgttCctcatgtcgttcacatcaca	8	9	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	5373536	T	T	5373536	3	4	194	1	0	0	0	0	1	0	0	0	11186	855	30	4	801	4	OR51B6	11	5373536	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	437266	5373536	129632980	859	156444											
OR51M1	390059	broad.mit.edu	37	chr11	5411244	5411244	+	Frame_Shift_Del	DEL	T	-	-													tggcctgcacagatatcaccTtcaataatctgtatggactg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	5411244	-	-	5411244	7	5	194	1	0	1	0	1	0	0	0	0	11197	1609	56	0	618	0	OR51M1	11	5411244	Frame_Shift_Del	DEL	T	TCGA-67-3771-01A-01D-1040-01	37708	5411244	129595272	860	156445											
OR52L1	338751	broad.mit.edu	37	chr11	6007293	6007293	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggccagaagaacatggaCatgatggggtacatgatgac	14	6	0	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6007293	T	T	6007293	3	4	194	1	0	0	0	0	1	0	0	0	11219	478	17	4	125	4	OR52L1	11	6007293	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	596049	6007293	128999223	861	156446											
OR52L1	338751	broad.mit.edu	37	chr11	6007353	6007353	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaaattccagggacatAgaagaccaggatgacacaaa	11	7	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6007353	T	T	6007353	3	4	194	1	0	0	0	0	1	0	0	0	11219	420	15	5	185	5	OR52L1	11	6007353	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	60	6007353	128999163	862	156447											
OR56B4	196335	broad.mit.edu	37	chr11	6129473	6129473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccacagggttcatcatGctcaggaatggcctgttgac	11	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6129473	T	T	6129473	3	4	194	1	0	0	0	0	1	0	0	0	11232	1319	46	3	467	3	OR56B4	11	6129473	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	122120	6129473	128877043	863	156448											
FXC1	26515	broad.mit.edu	37	chr11	6503179	6503179	+	Intron	DEL	C	-	-													gtacctctggccctggccttCccacgaccctcacccctagg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	6503179	-	-	6503179	6	5	194	0	1	1	0	1	0	0	0	0	6173	870	30	0		0	FXC1	11	6503179	Intron	DEL	C	TCGA-67-3771-01A-01D-1040-01	373706	6503179	128503337	864	156449											
DNHD1	144132	broad.mit.edu	37	chr11	6591340	6591340	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagctggctggtgagacccTtcctctcccccttggagtca	11	14	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	6591340	G	G	6591340	1	3	194	0	1	0	0	0	0	0	0	0	4708	1624	56	5		5	DNHD1	11	6591340	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	88161	6591340	128415176	865	156450											
ST5	6764	broad.mit.edu	37	chr11	8718304	8718304	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtcttcctctccccaacaAgacttccagccagtaccact	4	17	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	8718304	T	T	8718304	1	4	194	0	1	0	0	0	0	0	0	0	15338	87	3	5		5	ST5	11	8718304	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	2126964	8718304	126288212	866	156451											
ABCC8	6833	broad.mit.edu	37	chr11	17482025	17482025	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccttaccctacccctggGgctgcctaccttgggctgga	12	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17482025	A	A	17482025	1	1	194	0	1	0	0	0	0	0	0	0	58	1247	43	4		4	ABCC8	11	17482025	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	8763721	17482025	117524491	867	156452											
HPS5	11234	broad.mit.edu	37	chr11	18313334	18313334	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttttatcaacagattcttCattgcctaaagagtcccttt	5	9	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	18313334	T	T	18313334	3	4	194	1	0	0	0	0	1	0	0	0	7409	835	29	4	1326	4	HPS5	11	18313334	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	831309	18313334	116693182	868	156453											
HPS5	11234	broad.mit.edu	37	chr11	18316688	18316688	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgaagggtgccaatcttctCagtagttttacgcacaaagc	10	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	18316688	T	T	18316688	3	4	194	1	0	0	0	0	1	0	0	0	7409	835	29	4	1766	4	HPS5	11	18316688	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3354	18316688	116689828	869	156454											
HPS5	11234	broad.mit.edu	37	chr11	18327658	18327658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaagctcttcaaacaatcCcaaccagccatacaaatcgt	4	13	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18327658	A	A	18327658	1	1	194	0	1	0	0	0	0	0	0	0	7409	638	22	2		2	HPS5	11	18327658	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	10970	18327658	116678858	870	156455											
TMEM86A	144110	broad.mit.edu	37	chr11	18720497	18720497	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcccggcgcggctggaGcccaccggcctggccaccgg	16	18	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18720497	A	A	18720497	1	1	194	0	1	0	0	0	0	0	0	0	16331	986	34	4		4	TMEM86A	11	18720497	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	392839	18720497	116286019	871	156456											
IGSF22	283284	broad.mit.edu	37	chr11	18736221	18736221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatgttggggtgggagGgacttctgggaaaagggctg	20	4	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	18736221	T	T	18736221	1	4	194	0	1	0	0	0	0	0	0	0	7670	1247	43	2		2	IGSF22	11	18736221	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	15724	18736221	116270295	872	156457											
ANO5	203859	broad.mit.edu	37	chr11	22248914	22248914	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggtattagttacctatGctgaagtcttgggaatcaaa	12	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	22248914	T	T	22248914	3	4	194	1	0	0	0	0	1	0	0	0	700	1319	46	3	456	3	ANO5	11	22248914	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3512693	22248914	112757602	873	156458											
FSHB	2488	broad.mit.edu	37	chr11	30253355	30253355	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattgaggaggatgagcagAccaattatttttggtttggt	13	3	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	30253355	G	G	30253355	1	3	194	0	1	0	0	0	0	0	0	0	6132	290	10	5		5	FSHB	11	30253355	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	8004441	30253355	104753161	874	156459											
CD44	960	broad.mit.edu	37	chr11	35243288	35243288	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcgaagaaggtaaggggCtgtcctgggggctttcaact	15	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	35243288	A	A	35243288	1	1	194	0	1	0	0	0	0	0	0	0	3047	812	28	3		3	CD44	11	35243288	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4989933	35243288	99763228	875	156460											
RAG2	5897	broad.mit.edu	37	chr11	36614834	36614834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcacgaatttctatcttGttgtcctctaaagagatgat	6	8	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	36614834	T	T	36614834	3	4	194	1	0	0	0	0	1	0	0	0	13113	1368	48	3	702	3	RAG2	11	36614834	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1371546	36614834	98391682	876	156461											
AMBRA1	55626	broad.mit.edu	37	chr11	46534226	46534226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaacagtgtggcaaccCcaagggccgcccctcccccc	8	21	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46534226	A	A	46534226	1	1	194	0	1	0	0	0	0	0	0	0	565	638	22	2		2	AMBRA1	11	46534226	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	9919392	46534226	88472290	877	156462											
CKAP5	9793	broad.mit.edu	37	chr11	46784137	46784137	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcttctataggctactgCtgcagagattcacatctcag	7	10	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46784137	A	A	46784137	1	1	194	0	1	0	0	0	0	0	0	0	3476	812	28	3		3	CKAP5	11	46784137	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	249911	46784137	88222379	878	156463											
MYBPC3	4607	broad.mit.edu	37	chr11	47364314	47364314	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctagccgggtgggtgggtGgcaagtgctgtggcctcttc	18	10	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	47364314	C	C	47364314	1	2	194	0	1	0	0	0	0	0	0	0	10107	1363	47	4		4	MYBPC3	11	47364314	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	580177	47364314	87642202	879	156464											
MYBPC3	4607	broad.mit.edu	37	chr11	47367838	47367838	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtgacgccgtactggaagGcgatgcgctcgtactcagat	13	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	47367838	C	C	47367838	3	2	194	1	0	0	0	0	1	0	0	0	10107	1203	42	4	2902	4	MYBPC3	11	47367838	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3524	47367838	87638678	880	156465											
OR4X2	119764	broad.mit.edu	37	chr11	48266603	48266603	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtatcatttcagatcaCaccacccaaattgctgcctc	4	13	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	48266603	G	G	48266603	1	3	194	0	1	0	0	0	0	0	0	0	11179	493	17	4		4	OR4X2	11	48266603	5'Flank	SNP	C	TCGA-67-3771-01A-01D-1040-01	898765	48266603	86739913	881	156466											
OR4S2	219431	broad.mit.edu	37	chr11	55418972	55418972	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgttggtgttgttgtgaCagccaacagtggtaccattg	12	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55418972	A	A	55418972	3	1	194	1	0	0	0	0	1	0	0	0	11177	478	17	3	595	3	OR4S2	11	55418972	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	7152369	55418972	79587544	882	156467											
OR5W2	390148	broad.mit.edu	37	chr11	55681456	55681456	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcaataaaaccaaagacGgtgaataacactaactcatt	5	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55681456	A	A	55681456	2	1	194	1	0	0	0	0	0	0	0	1	11279	1103	39	4		4	OR5W2	11	55681456	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	262484	55681456	79325060	883	156468											
OR5M1	390168	broad.mit.edu	37	chr11	56380893	56380893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagatcgcaaggaataccCcaaacaggatcttctctagc	9	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	56380893	A	A	56380893	3	1	194	1	0	0	0	0	1	0	0	0	11266	623	22	2	865	2	OR5M1	11	56380893	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	699437	56380893	78625623	884	156469											
LRRC55	219527	broad.mit.edu	37	chr11	56949837	56949837	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcctccatgccaagcGcttggcacacttggacctga	8	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	56949837	C	C	56949837	3	2	194	1	0	0	0	0	1	0	0	0	9098	1087	38	4	472	4	LRRC55	11	56949837	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	568944	56949837	78056679	885	156470											
PRG3	10394	broad.mit.edu	37	chr11	57146356	57146356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtctccaggcaagagccCggcatcccttttcaggttaa	10	12	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	57146356	T	T	57146356	1	4	194	0	1	0	0	0	0	0	0	0	12586	667	23	4		4	PRG3	11	57146356	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	196519	57146356	77860160	886	156471											
SLC43A1	8501	broad.mit.edu	37	chr11	57252750	57252750	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagaaacagagtcaagtaGgtagtcatctgcccttagcc	11	9	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	57252750	A	A	57252750	1	1	194	0	1	0	0	0	0	0	0	0	14746	1015	35	4		4	SLC43A1	11	57252750	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	106394	57252750	77753766	887	156472											
OR10Q1	219960	broad.mit.edu	37	chr11	57995949	57995949	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgagggtgtagtgcagCgggtggcagatagccacata	16	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995949	T	T	57995949	2	4	194	1	0	0	0	0	0	0	0	1	11010	755	27	4		4	OR10Q1	11	57995949	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	743199	57995949	77010567	888	156473											
OR5B21	219968	broad.mit.edu	37	chr11	58275103	58275103	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagagtctgaaggtgcctGctgcatggatagaggcattg	16	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	58275103	T	T	58275103	3	4	194	1	0	0	0	0	1	0	0	0	11245	1319	46	3	455	3	OR5B21	11	58275103	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	279154	58275103	76731413	889	156474											
OR5B21	219968	broad.mit.edu	37	chr11	58275540	58275540	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtcatctgttaatccCaagaggataaactctgtcac	9	9	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	58275540	G	G	58275540	3	3	194	1	0	0	0	0	1	0	0	0	11245	593	21	4	892	4	OR5B21	11	58275540	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	437	58275540	76730976	890	156475											
GLYAT	10249	broad.mit.edu	37	chr11	58477469	58477469	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctccagtctggtccattaGatcccagcacacaggggtcc	9	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	58477469	C	C	58477469	3	2	194	1	0	0	0	0	1	0	0	0	6543	933	33	4	233	4	GLYAT	11	58477469	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	201929	58477469	76529047	891	156476											
OSBP	5007	broad.mit.edu	37	chr11	59377827	59377828	+	Intron	DNP	CC	AT	AT													aaggggcaaaaagaaagttcCccaggcaggtgttctttgtt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	59377828	AT	AT	59377827	1	1	194	0	1	0	0	0	0	0	0	0	11367	638	22	2		2	OSBP	11	59377827	Intron	DNP	CC	TCGA-67-3771-01A-01D-1040-01	900358	59377827	75628689	892	156477											
ZP1	22917	broad.mit.edu	37	chr11	60636693	60636693	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctccaggccgcaggagcCtgcagtcttctcggccgatt	11	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	60636693	T	T	60636693	3	4	194	1	0	0	0	0	1	0	0	0	18344	681	24	4	278	4	ZP1	11	60636693	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1258866	60636693	74369823	893	156478											
TMEM132A	54972	broad.mit.edu	37	chr11	60699590	60699590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgagtctgccaacacacaGgtcctgcaggtgagtggcag	14	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	60699590	T	T	60699590	3	4	194	1	0	0	0	0	1	0	0	0	16168	991	35	2	1376	2	TMEM132A	11	60699590	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	62897	60699590	74306926	894	156479											
CD5	921	broad.mit.edu	37	chr11	60889133	60889133	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggggggcagcagcatctgtGaaggcaccgtggaggtgcgc	19	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	60889133	A	A	60889133	3	1	194	1	0	0	0	0	1	0	0	0	3051	1291	45	4	878	4	CD5	11	60889133	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	189543	60889133	74117383	895	156480											
VWCE	220001	broad.mit.edu	37	chr11	61049513	61049513	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagggtccatgcctgcccCgaggtgcgggatgtgactca	14	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	61049513	T	T	61049513	1	4	194	0	1	0	0	0	0	0	0	0	17372	667	23	4		4	VWCE	11	61049513	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	160380	61049513	73957003	896	156481											
DDB1	1642	broad.mit.edu	37	chr11	61080925	61080925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaggaaaacatcatgaCcccctcaatcaatagctctc	6	12	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61080925	A	A	61080925	1	1	194	0	1	0	0	0	0	0	0	0	4356	522	18	3		3	DDB1	11	61080925	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	31412	61080925	73925591	897	156482											
DAK	26007	broad.mit.edu	37	chr11	61106638	61106638	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatcagggccgtggcccaGgccggcacaggtaagcctgg	16	14	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61106638	A	A	61106638	2	1	194	1	0	0	0	0	0	0	0	1	4261	991	35	4		4	DAK	11	61106638	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	25713	61106638	73899878	898	156483											
AHNAK	79026	broad.mit.edu	37	chr11	62294197	62294197	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggcatctttaacttaggCcctttcaactttccctctgg	6	13	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	62294197	A	A	62294197	2	1	194	1	0	0	0	0	0	0	0	1	414	726	26	3		3	AHNAK	11	62294197	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1187559	62294197	72712319	899	156484											
EML3	256364	broad.mit.edu	37	chr11	62372924	62372924	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggggcggcagggagtgcCcaggtggtactagaagcatc	18	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	62372924	A	A	62372924	1	1	194	0	1	0	0	0	0	0	0	0	5140	638	22	2		2	EML3	11	62372924	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	78727	62372924	72633592	900	156485											
ZBTB3	79842	broad.mit.edu	37	chr11	62519745	62519745	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcggatgtggcggtagagGtcccctgactgcgtgtagct	16	9	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	62519745	A	A	62519745	2	1	194	1	0	0	0	0	0	0	0	1	17660	1252	44	4		4	ZBTB3	11	62519745	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	146821	62519745	72486771	901	156486											
SLC3A2	6520	broad.mit.edu	37	chr11	62655685	62655685	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaagtgccaacatgactGtgaaggtaagagttctagat	11	6	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	62655685	C	C	62655685	3	2	194	1	0	0	0	0	1	0	0	0	14741	1377	48	4	1667	4	SLC3A2	11	62655685	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	135940	62655685	72350831	902	156487											
SLC22A6	9356	broad.mit.edu	37	chr11	62751918	62751918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtccccactgcggggagGtgaagcggaggcaggactca	17	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	62751918	T	T	62751918	3	4	194	1	0	0	0	0	1	0	0	0	14572	1261	44	3	1486	3	SLC22A6	11	62751918	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	96233	62751918	72254598	903	156488											
HRASLS5	117245	broad.mit.edu	37	chr11	63235916	63235916	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatctcaatcaggtctcCaggtctgggtcttggttttc	9	9	5	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	63235916	A	A	63235916	4	1	194	1	0	0	0	0	0	1	0	0	7418	603	21	2	454	2	HRASLS5	11	63235916	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	483998	63235916	71770600	904	156489											
ESRRA	2101	broad.mit.edu	37	chr11	64081701	64081701	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcacagtcctatctgtcccAcaattcaaggagtgcgcctg	9	13	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	64081701	T	T	64081701	1	4	194	0	1	0	0	0	0	0	0	0	5302	174	6	5		5	ESRRA	11	64081701	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	845785	64081701	70924815	905	156490											
NRXN2	9379	broad.mit.edu	37	chr11	64374937	64374937	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggatcacctccactgcgcCcggcgggccccgctccccag	11	22	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	64374937	A	A	64374937	3	1	194	1	0	0	0	0	1	0	0	0	10761	623	22	2	272	2	NRXN2	11	64374937	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	293236	64374937	70631579	906	156491											
PYGM	5837	broad.mit.edu	37	chr11	64518939	64518939	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtacccaggtgcagcCtgaggggacaaagtctgggg	17	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	64518939	A	A	64518939	5	1	194	1	0	0	0	0	0	0	1	0	12970	695	24	2	721	2	PYGM	11	64518939	Splice_Site	SNP	C	TCGA-67-3771-01A-01D-1040-01	144002	64518939	70487577	907	156492											
NAALADL1	10004	broad.mit.edu	37	chr11	64815843	64815843	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcaaacacgattgatctgcGaggacgccaggtgcctggga	14	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	64815843	A	A	64815843	3	1	194	1	0	0	0	0	1	0	0	0	10223	1058	37	4	1049	4	NAALADL1	11	64815843	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	296904	64815843	70190673	908	156493											
SPDYC	387778	broad.mit.edu	37	chr11	64938714	64938714	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctctgcacccacccctccAccgtcctggcccctgtcacc	6	23	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	64938714	T	T	64938714	1	4	194	0	1	0	0	0	0	0	0	0	15144	174	6	5		5	SPDYC	11	64938714	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	122871	64938714	70067802	909	156494											
SIPA1	6494	broad.mit.edu	37	chr11	65417286	65417286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacccggcgccggagctgaGggcctcctttctgccacgta	12	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	65417286	T	T	65417286	3	4	194	1	0	0	0	0	1	0	0	0	14441	1000	35	2	2738	2	SIPA1	11	65417286	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	478572	65417286	69589230	910	156495											
CATSPER1	117144	broad.mit.edu	37	chr11	65793536	65793536	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgtaggaacggtgggagggGacggcgccttgagagggagc	21	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	65793536	C	C	65793536	2	2	194	1	0	0	0	0	0	0	0	1	2713	1161	41	4		4	CATSPER1	11	65793536	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	376250	65793536	69212980	911	156496											
PACS1	55690	broad.mit.edu	37	chr11	65983533	65983533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgtgcattccttggctGtgtttctccaggtgcctctg	11	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	65983533	T	T	65983533	1	4	194	0	1	0	0	0	0	0	0	0	11466	1392	48	3		3	PACS1	11	65983533	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	189997	65983533	69022983	912	156497											
RIN1	9610	broad.mit.edu	37	chr11	66102012	66102012	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaggcgacagcagcttctCagggcccagctccgcactca	10	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	66102012	T	T	66102012	3	4	194	1	0	0	0	0	1	0	0	0	13482	835	29	4	1113	4	RIN1	11	66102012	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	118479	66102012	68904504	913	156498											
CCDC87	55231	broad.mit.edu	37	chr11	66357977	66357977	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaacagggttgactggTggggatccttcagggccgag	16	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	66357977	A	A	66357977	3	1	194	1	0	0	0	0	1	0	0	0	2890	1696	59	5	43	5	CCDC87	11	66357977	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	255965	66357977	68648539	914	156499											
NDUFS8	4728	broad.mit.edu	37	chr11	67800450	67800450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgactgaccgggcagcccGcaccctgctgtggactgagc	14	14	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	67800450	T	T	67800450	3	4	194	1	0	0	0	0	1	0	0	0	10393	1087	38	3	180	3	NDUFS8	11	67800450	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1442473	67800450	67206066	915	156500											
CHKA	1119	broad.mit.edu	37	chr11	67833136	67833136	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgatcgcactactgcactCcagcctgggaaacagagtga	10	12	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	67833136	A	A	67833136	1	1	194	0	1	0	0	0	0	0	0	0	3378	870	30	3		3	CHKA	11	67833136	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	32686	67833136	67173380	916	156501											
MTL5	9633	broad.mit.edu	37	chr11	68478241	68478241	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaacacacgcccgcccctGcaggctcacacattctttcc	5	20	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	68478241	A	A	68478241	1	1	194	0	1	0	0	0	0	0	0	0	10030	1334	46	4		4	MTL5	11	68478241	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	645105	68478241	66528275	917	156502											
CCND1	595	broad.mit.edu	37	chr11	69456155	69456155	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatgccaacctcctcaacgAccgggtgctgcgggccatgc	12	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	69456155	C	C	69456155	3	2	194	1	0	0	0	0	1	0	0	0	2946	275	10	5	76	5	CCND1	11	69456155	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	977914	69456155	65550361	918	156503											
ARAP1	116985	broad.mit.edu	37	chr11	72410007	72410007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggaggccccaccttccCcagtcagacacccttacacc	7	20	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	72410007	A	A	72410007	1	1	194	0	1	0	0	0	0	0	0	0	840	638	22	2		2	ARAP1	11	72410007	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2953852	72410007	62596509	919	156504											
RAB6A	5870	broad.mit.edu	37	chr11	73390821	73390821	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacatttagcaaagggtactGaggtttatgatcactgtaca	9	6	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	73390821	A	A	73390821	1	1	194	0	1	0	0	0	0	0	0	0	13059	1305	45	4		4	RAB6A	11	73390821	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	980814	73390821	61615695	920	156505											
DGAT2	84649	broad.mit.edu	37	chr11	75507352	75507352	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcccagccagtttcctctGacccaaggtcatccttgcag	7	16	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	75507352	C	C	75507352	1	2	194	0	1	0	0	0	0	0	0	0	4498	1305	45	4		4	DGAT2	11	75507352	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2116531	75507352	59499164	921	156506											
WNT11	7481	broad.mit.edu	37	chr11	75902715	75902715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggccggatatccaggtcCttgggcaccaggtgcttgcg	14	12	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	75902715	A	A	75902715	3	1	194	1	0	0	0	0	1	0	0	0	17511	680	24	2	289	2	WNT11	11	75902715	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	395363	75902715	59103801	922	156507											
ODZ4	26011	broad.mit.edu	37	chr11	78412823	78412823	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtcgccgtccccagtgTaggtgaagttgtacaggtag	14	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	78412823	C	C	78412823	3	2	194	1	0	0	0	0	1	0	0	0	10932	1638	57	5	3502	5	ODZ4	11	78412823	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	2510108	78412823	56593693	923	156508											
C11orf82	220042	broad.mit.edu	37	chr11	82643578	82643578	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcgttactcagacttgaaGagacagccagcagttcccag	9	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	82643578	C	C	82643578	3	2	194	1	0	0	0	0	1	0	0	0	1677	943	33	4	1212	4	C11orf82	11	82643578	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4230755	82643578	52362938	924	156509											
DLG2	1740	broad.mit.edu	37	chr11	83673925	83673925	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attaactaacaggcatatctGacctggtgtagtcgtcgtca	9	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	83673925	T	T	83673925	1	4	194	0	1	0	0	0	0	0	0	0	4595	1305	45	3		3	DLG2	11	83673925	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1030347	83673925	51332591	925	156510											
DLG2	1740	broad.mit.edu	37	chr11	83691417	83691417	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccagaattgtgagaaaaTagatttctgccattttaagc	7	7	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	83691417	C	C	83691417	1	2	194	0	1	0	0	0	0	0	0	0	4595	1421	49	5		5	DLG2	11	83691417	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	17492	83691417	51315099	926	156511											
TMEM135	65084	broad.mit.edu	37	chr11	86970191	86970191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatagtctctccgaccagGtctcatctagcttctcctcg	6	17	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	86970191	T	T	86970191	1	4	194	0	1	0	0	0	0	0	0	0	16174	1276	44	3		3	TMEM135	11	86970191	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3278774	86970191	48036325	927	156512											
MTNR1B	4544	broad.mit.edu	37	chr11	92714702	92714702	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgtggccatcttctatgacGgctgggccctgggggaggag	17	10	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	92714702	C	C	92714702	3	2	194	1	0	0	0	0	1	0	0	0	10046	1116	39	4	319	4	MTNR1B	11	92714702	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	5744511	92714702	42291814	928	156513											
MTNR1B	4544	broad.mit.edu	37	chr11	92715222	92715222	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgctgtggccatcaaccCccaagaaatggctccccaga	8	17	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	92715222	A	A	92715222	3	1	194	1	0	0	0	0	1	0	0	0	10046	623	22	2	839	2	MTNR1B	11	92715222	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	520	92715222	42291294	929	156514											
TAF1D	79101	broad.mit.edu	37	chr11	93471083	93471083	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaatatggcaaagtgtAgttatattaagagatacaag	8	2	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	93471083	C	C	93471083	1	2	194	0	1	0	0	0	0	0	0	0	15641	435	15	5		5	TAF1D	11	93471083	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	755861	93471083	41535433	930	156515											
PIWIL4	143689	broad.mit.edu	37	chr11	94330994	94330994	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaatgctcgctttgaactAgagacctggggactgcattt	10	10	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	94330994	G	G	94330994	2	3	194	1	0	0	0	0	0	0	0	1	12055	407	15	5		5	PIWIL4	11	94330994	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	859911	94330994	40675522	931	156516											
DYNC2H1	79659	broad.mit.edu	37	chr11	103106399	103106399	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctctctcttttttccAggttgtagagataacagagg	8	8	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	103106399	T	T	103106399	5	4	194	1	0	0	0	0	0	0	1	0	4886	202	7	5	9812	5	DYNC2H1	11	103106399	Splice_Site	SNP	A	TCGA-67-3771-01A-01D-1040-01	8775405	103106399	31900117	932	156517											
SLN	6588	broad.mit.edu	37	chr11	107578452	107578452	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgcaggtcacaggtgcCctcggatggagaatggcatc	15	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	107578452	A	A	107578452	1	1	194	0	1	0	0	0	0	0	0	0	14866	638	22	2		2	SLN	11	107578452	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	4472053	107578452	27428064	933	156518											
NPAT	4863	broad.mit.edu	37	chr11	108064653	108064653	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagataaatattgtatacatCagcaaaaaaactccaaatca	3	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	108064653	T	T	108064653	1	4	194	0	1	0	0	0	0	0	0	0	10661	841	29	4		4	NPAT	11	108064653	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	486201	108064653	26941863	934	156519											
DDX10	1662	broad.mit.edu	37	chr11	108709331	108709331	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttctgaggtgcatttGgagtattagaagagatcgac	11	5	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	108709331	C	C	108709331	1	2	194	0	1	0	0	0	0	0	0	0	4375	1363	47	4		4	DDX10	11	108709331	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	644678	108709331	26297185	935	156520											
BCO2	83875	broad.mit.edu	37	chr11	112053704	112053704	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatatggaaggaagtcagatGacaggaattaacctgagggt	14	4	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	112053704	T	T	112053704	1	4	194	0	1	0	0	0	0	0	0	0	1390	1305	45	3		3	BCO2	11	112053704	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3344373	112053704	22952812	936	156521											
DRD2	1813	broad.mit.edu	37	chr11	113286152	113286152	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttgagacctttagtggAgccctcaggtgggccctgaa	13	10	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113286152	T	T	113286152	2	4	194	1	0	0	0	0	0	0	0	1	4797	291	11	5		5	DRD2	11	113286152	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	1232448	113286152	21720364	937	156522											
HTR3A	3359	broad.mit.edu	37	chr11	113860407	113860407	+	Frame_Shift_Del	DEL	A	-	-													tccgtgctggacaagctgctAttccacatttacctgctagc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	113860407	-	-	113860407	7	5	194	1	0	1	0	1	0	0	0	0	7514	436	16	0	1529	0	HTR3A	11	113860407	Frame_Shift_Del	DEL	A	TCGA-67-3771-01A-01D-1040-01	574255	113860407	21146109	938	156523											
ZNF259	8882	broad.mit.edu	37	chr11	116649817	116649817	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcagtgccgctgtgccactCcccctctctgcaggcagctt	9	17	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	116649817	A	A	116649817	1	1	194	0	1	0	0	0	0	0	0	0	17927	870	30	3		3	ZNF259	11	116649817	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2789410	116649817	18356699	939	156524											
APOA5	116519	broad.mit.edu	37	chr11	116661394	116661394	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctctttgaagcggccgGtgtggtgcaccacgcggctc	15	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	116661394	T	T	116661394	3	4	194	1	0	0	0	0	1	0	0	0	786	1261	44	3	553	3	APOA5	11	116661394	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	11577	116661394	18345122	940	156525											
APOC3	345	broad.mit.edu	37	chr11	116701675	116701675	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccattcccacccgcccctGccctggtgagatcccaacaa	6	20	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	116701675	A	A	116701675	1	1	194	0	1	0	0	0	0	0	0	0	801	1334	46	4		4	APOC3	11	116701675	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	40281	116701675	18304841	941	156526											
SIK3	23387	broad.mit.edu	37	chr11	116798248	116798249	+	Intron	DNP	CA	AT	AT													acattgatagtcctggtttgCatctatcaaaattcattagt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	116798249	AT	AT	116798248	1	1	194	0	1	0	0	0	0	0	0	0	14432	725	25	3		3	SIK3	11	116798248	Intron	DNP	CA	TCGA-67-3771-01A-01D-1040-01	96573	116798248	18208268	942	156527											
CEP164	22897	broad.mit.edu	37	chr11	117241626	117241626	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacagagtaagactctgtctCaaaaaaataaaaaaaaaaat	5	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	117241626	G	G	117241626	1	3	194	0	1	0	0	0	0	0	0	0	3279	841	29	4		4	CEP164	11	117241626	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	443378	117241626	17764890	943	156528											
TREH	11181	broad.mit.edu	37	chr11	118532435	118532435	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccctccatgacccagtaggaGtccctggggaaggggcagct	14	13	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	118532435	C	C	118532435	3	2	194	1	0	0	0	0	1	0	0	0	16593	1020	36	4	1262	4	TREH	11	118532435	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1290809	118532435	16474081	944	156529											
CBL	867	broad.mit.edu	37	chr11	119170450	119170450	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggccaaaaacatcctccggGaatttgtttccatttcttct	6	11	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	119170450	T	T	119170450	4	4	194	1	0	0	0	0	0	1	0	0	2726	1175	41	3	2742	3	CBL	11	119170450	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	638015	119170450	15836066	945	156530											
TBCEL	219899	broad.mit.edu	37	chr11	120916426	120916426	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caacctagtggaagaagtttCatgcaagtattatgtgaaaa	9	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	120916426	T	T	120916426	2	4	194	1	0	0	0	0	0	0	0	1	15757	825	29	4		4	TBCEL	11	120916426	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1745976	120916426	14090090	946	156531											
CRTAM	56253	broad.mit.edu	37	chr11	122735462	122735462	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcatttagaataaacactCgacattttaacctcttaatc	3	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	122735462	A	A	122735462	1	1	194	0	1	0	0	0	0	0	0	0	3929	899	31	3		3	CRTAM	11	122735462	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1819036	122735462	12271054	947	156532											
GRAMD1B	57476	broad.mit.edu	37	chr11	123481049	123481049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagagccgactcaggtGtggtgtgtggaagtcccagt	15	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	123481049	T	T	123481049	1	4	194	0	1	0	0	0	0	0	0	0	6814	1392	48	3		3	GRAMD1B	11	123481049	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	745587	123481049	11525467	948	156533											
ZNF202	7753	broad.mit.edu	37	chr11	123601254	123601254	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caccagcgtcactgcctcctCgccactttctggccgttggc	9	18	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	123601254	T	T	123601254	3	4	194	1	0	0	0	0	1	0	0	0	17889	893	31	4	1627	4	ZNF202	11	123601254	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	120205	123601254	11405262	949	156534											
VWA5A	4013	broad.mit.edu	37	chr11	123988412	123988412	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatctctgtgagcgtgaacAtttacgagtttgtggctggt	13	6	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	123988412	T	T	123988412	3	4	194	1	0	0	0	0	1	0	0	0	17369	217	8	5	82	5	VWA5A	11	123988412	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	387158	123988412	11018104	950	156535											
PANX3	116337	broad.mit.edu	37	chr11	124482851	124482851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccactccaactcaggcggCctcaaagctgtgttcctgtt	8	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	124482851	T	T	124482851	1	4	194	0	1	0	0	0	0	0	0	0	11516	754	26	4		4	PANX3	11	124482851	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	494439	124482851	10523665	951	156536											
ESAM	90952	broad.mit.edu	37	chr11	124624473	124624473	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cctcagcagacaggcctcctCcccacttgcaacccctcccc	5	23	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	124624473	G	G	124624473	1	3	194	0	1	0	0	0	0	0	0	0	5289	870	30	4		4	ESAM	11	124624473	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	141622	124624473	10382043	952	156537											
NFRKB	4798	broad.mit.edu	37	chr11	129762497	129762497	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggctgcctgcaatgtagaAaatgaacaaaagggagcaca	11	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	129762497	T	T	129762497	1	4	194	0	1	0	0	0	0	0	0	0	10479	29	1	5		5	NFRKB	11	129762497	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	5138024	129762497	5244019	953	156538											
APLP2	334	broad.mit.edu	37	chr11	129996686	129996686	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcgcttccagaaggctaaGgagcagctggagattcggca	14	10	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	129996686	A	A	129996686	2	1	194	1	0	0	0	0	0	0	0	1	781	991	35	4		4	APLP2	11	129996686	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	234189	129996686	5009830	954	156539											
ST14	6768	broad.mit.edu	37	chr11	130058639	130058639	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacatgcctcgcctgtgctCccagggccctgggatggggg	17	13	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	130058639	T	T	130058639	1	4	194	0	1	0	0	0	0	0	0	0	15329	870	30	4		4	ST14	11	130058639	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	61953	130058639	4947877	955	156540											
NCAPD3	23310	broad.mit.edu	37	chr11	134093889	134093889	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcccgcgcgcgcgccgagTcgttcctgtggaccaatcac	12	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	134093889	A	A	134093889	1	1	194	0	1	0	0	0	0	0	0	0	10301	1682	58	5		5	NCAPD3	11	134093889	5'UTR	SNP	T	TCGA-67-3771-01A-01D-1040-01	4035250	134093889	912627	956	156541											
WNK1	65125	broad.mit.edu	37	chr12	994187	994187	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cataccacctgtgtctgaatCaccagtactttccagcgtag	7	13	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	994187	T	T	994187	3	4	194	1	0	0	0	0	1	0	0	0	17504	838	29	4	5793	4	WNK1	12	994187	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01		994187	132857708	957	156542											
AKAP3	10566	broad.mit.edu	37	chr12	4747357	4747357	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaccagtcaaccttttcTgacatctggaagcaggggaa	10	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	4747357	C	C	4747357	2	2	194	1	0	0	0	0	0	0	0	1	452	1567	55	5		5	AKAP3	12	4747357	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	3753170	4747357	129104538	958	156543											
ANO2	57101	broad.mit.edu	37	chr12	6055288	6055288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagaagtactatgttaaGgtcaagtatgccatttgtga	10	4	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6055288	T	T	6055288	1	4	194	0	1	0	0	0	0	0	0	0	697	1015	35	2		2	ANO2	12	6055288	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1307931	6055288	127796607	959	156544											
VAMP1	6843	broad.mit.edu	37	chr12	6579803	6579803	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaactgccaagctccgcctCgcgccgactaccccgcggtc	11	19	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	6579803	G	G	6579803	1	3	194	0	1	0	0	0	0	0	0	0	17239	899	31	4		4	VAMP1	12	6579803	5'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	524515	6579803	127272092	960	156545											
PEX5	5830	broad.mit.edu	37	chr12	7342955	7342955	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaaacctcctgtgtccatCagagagctggcggtcaccat	9	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	7342955	T	T	7342955	1	4	194	0	1	0	0	0	0	0	0	0	11843	841	29	4		4	PEX5	12	7342955	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	763152	7342955	126508940	961	156546											
GRIN2B	2904	broad.mit.edu	37	chr12	13717013	13717013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcggagcggatcaagtcGtcgtggccactgtagcggtc	14	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	13717013	T	T	13717013	3	4	194	1	0	0	0	0	1	0	0	0	6846	1136	40	3	1299	3	GRIN2B	12	13717013	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6374058	13717013	120134882	962	156547											
GRIN2B	2904	broad.mit.edu	37	chr12	13717313	13717313	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaggttctcctcacaGggcgggttgttgtaggattt	14	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	13717313	T	T	13717313	2	4	194	1	0	0	0	0	0	0	0	1	6846	987	35	2		2	GRIN2B	12	13717313	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	300	13717313	120134582	963	156548											
PIK3C2G	5288	broad.mit.edu	37	chr12	18499547	18499547	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaatatggcccttcttagtGacttgatctctatctcttcc	5	11	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	18499547	T	T	18499547	1	4	194	0	1	0	0	0	0	0	0	0	12006	1305	45	3		3	PIK3C2G	12	18499547	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4782234	18499547	115352348	964	156549											
PDE3A	5139	broad.mit.edu	37	chr12	20522956	20522956	+	Frame_Shift_Del	DEL	G	-	-													ctggcgtacctggccggcgtGctggggatcctcttggccag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	20522956	-	-	20522956	7	5	194	1	0	1	0	1	0	0	0	0	11731	1306	46	0	740	0	PDE3A	12	20522956	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	2023409	20522956	113328939	965	156550											
PDE3A	5139	broad.mit.edu	37	chr12	20705006	20705006	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttcacatacacgggtagTggtggtcgagagctttccgg	13	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20705006	A	A	20705006	1	1	194	0	1	0	0	0	0	0	0	0	11731	1711	59	5		5	PDE3A	12	20705006	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	182050	20705006	113146889	966	156551											
ABCC9	10060	broad.mit.edu	37	chr12	21981911	21981911	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgtcctgacctccagccatCtgttggcagctgagagaaat	10	13	1	3	rs12298510		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	21981911	G	G	21981911	3	3	194	1	0	0	0	0	1	0	0	0	59	913	32	4	1181	4	ABCC9	12	21981911	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1276905	21981911	111869984	967	156552											
ABCC9	10060	broad.mit.edu	37	chr12	22068796	22068796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcactcccagatcctggaGgtcttcaggaggctttactt	9	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	22068796	T	T	22068796	3	4	194	1	0	0	0	0	1	0	0	0	59	1000	35	2	4305	2	ABCC9	12	22068796	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	86885	22068796	111783099	968	156553											
ITPR2	3709	broad.mit.edu	37	chr12	26553192	26553192	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttcatactcttcatcagCtataaaaacacatacaaata	1	10	5	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	26553192	G	G	26553192	5	3	194	1	0	0	0	0	0	0	1	0	7991	811	28	4	726	4	ITPR2	12	26553192	Splice_Site	SNP	C	TCGA-67-3771-01A-01D-1040-01	4484396	26553192	107298703	969	156554											
TMTC1	83857	broad.mit.edu	37	chr12	29786167	29786167	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccgcatgtcccatatggtCtctaccagaggaatactgcc	8	13	1	1	rs139579223	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	29786167	A	A	29786167	3	1	194	1	0	0	0	0	1	0	0	0	16383	912	32	3	1659	3	TMTC1	12	29786167	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3232975	29786167	104065728	970	156555											
CNTN1	1272	broad.mit.edu	37	chr12	41410526	41410526	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcaacaattttggttacAtagtggcatttaagccattt	8	6	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	41410526	G	G	41410526	3	3	194	1	0	0	0	0	1	0	0	0	3672	217	8	5	2297	5	CNTN1	12	41410526	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	11624359	41410526	92441369	971	156556											
ADAMTS20	80070	broad.mit.edu	37	chr12	43824099	43824099	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaataattttaacacaTcaataatctttctgtctcat	2	7	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	43824099	C	C	43824099	1	2	194	0	1	0	0	0	0	0	0	0	266	1450	50	5		5	ADAMTS20	12	43824099	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	2413573	43824099	90027796	972	156557											
NELL2	4753	broad.mit.edu	37	chr12	45004705	45004705	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccaacagtgttgaagcatAaagcattttcatcacagttg	7	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	45004705	T	T	45004705	4	4	194	1	0	0	0	0	0	1	0	0	10429	372	13	5	985	5	NELL2	12	45004705	Nonsense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	1180606	45004705	88847190	973	156558											
ASB8	140461	broad.mit.edu	37	chr12	48543473	48543473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggtgtctggcctattagGttgatgactctgacctctgc	12	9	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	48543473	T	T	48543473	3	4	194	1	0	0	0	0	1	0	0	0	1033	1252	44	3	327	3	ASB8	12	48543473	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3538768	48543473	85308422	974	156559											
WNT1	7471	broad.mit.edu	37	chr12	49373271	49373271	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggtattgtgaacgtagcctCctccacgaacctgcttacag	10	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	49373271	T	T	49373271	3	4	194	1	0	0	0	0	1	0	0	0	17508	855	30	4	131	4	WNT1	12	49373271	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	829798	49373271	84478624	975	156560											
MLL2	8085	broad.mit.edu	37	chr12	49435132	49435132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccggcggcttcaggaaccCgtccgcagaggtagacaagc	14	14	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	49435132	A	A	49435132	3	1	194	1	0	0	0	0	1	0	0	0	9714	652	23	1	10288	1	MLL2	12	49435132	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	61861	49435132	84416763	976	156561											
PRPH	5630	broad.mit.edu	37	chr12	49691390	49691390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgctggggcggggcagGgcggggtcgggactgggccg	25	9	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	49691390	T	T	49691390	1	4	194	0	1	0	0	0	0	0	0	0	12682	1247	43	2		2	PRPH	12	49691390	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	256258	49691390	84160505	977	156562											
KCNH3	23416	broad.mit.edu	37	chr12	49950939	49950939	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcttaccagccccagCtgataaccccatcctactac	3	19	2	1	rs150135371	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	49950939	G	G	49950939	1	3	194	0	1	0	0	0	0	0	0	0	8103	812	28	4		4	KCNH3	12	49950939	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	259549	49950939	83900956	978	156563											
NR4A1	3164	broad.mit.edu	37	chr12	52448768	52448768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggccacccaccagctggGggagggagagagctattcca	14	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52448768	T	T	52448768	3	4	194	1	0	0	0	0	1	0	0	0	10727	1232	43	2	658	2	NR4A1	12	52448768	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2497829	52448768	81403127	979	156564											
C12orf44	60673	broad.mit.edu	37	chr12	52467573	52467573	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggagggcacctactccAttggcaccgtgggcacccag	13	13	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	52467573	G	G	52467573	3	3	194	1	0	0	0	0	1	0	0	0	1703	217	8	5	141	5	C12orf44	12	52467573	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	18805	52467573	81384322	980	156565											
KRT82	3888	broad.mit.edu	37	chr12	52788852	52788853	+	Missense_Mutation	DNP	GG	TT	TT													agtagcccctggggctcgcaGgggacatagagttcaccagt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	52788853	TT	TT	52788852	3	4	194	1	0	0	0	0	1	0	0	0	8567	987	35	2	96	2	KRT82	12	52788852	Missense_Mutation	DNP	GG	TCGA-67-3771-01A-01D-1040-01	321279	52788852	81063043	981	156566											
KRT73	319101	broad.mit.edu	37	chr12	53010126	53010126	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtagcagctcccacttGgtctccagcacctggttctg	10	14	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	53010126	A	A	53010126	2	1	194	1	0	0	0	0	0	0	0	1	8557	1335	47	4		4	KRT73	12	53010126	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	221274	53010126	80841769	982	156567											
KRT2	3849	broad.mit.edu	37	chr12	53042001	53042001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccttgctcctctgggCgatctcctcatactgggcct	8	15	4	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	53042001	A	A	53042001	3	1	194	1	0	0	0	0	1	0	0	0	8528	768	27	3	861	3	KRT2	12	53042001	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	31875	53042001	80809894	983	156568											
KRT2	3849	broad.mit.edu	37	chr12	53045355	53045355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtcaccttgtcaatgaagGaggcaaatttgttgttgaga	12	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	53045355	A	A	53045355	3	1	194	1	0	0	0	0	1	0	0	0	8528	1174	41	4	1383	4	KRT2	12	53045355	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3354	53045355	80806540	984	156569											
KRT77	374454	broad.mit.edu	37	chr12	53088588	53088588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagctcctgcgaggcatggCgcacaggctgactccttcca	11	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	53088588	A	A	53088588	1	1	194	0	1	0	0	0	0	0	0	0	8561	783	27	3		3	KRT77	12	53088588	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	43233	53088588	80763307	985	156570											
EIF4B	1975	broad.mit.edu	37	chr12	53400128	53400128	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcgcagctttacgaacctAgagcagcgccgccccgcctc	10	19	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	53400128	C	C	53400128	1	2	194	0	1	0	0	0	0	0	0	0	5069	435	15	5		5	EIF4B	12	53400128	5'UTR	SNP	A	TCGA-67-3771-01A-01D-1040-01	311540	53400128	80451767	986	156571											
TENC1	23371	broad.mit.edu	37	chr12	53451107	53451107	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaggagatcagtcataaagaGaacctgaaggacagtcaggg	14	6	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	53451107	C	C	53451107	1	2	194	0	1	0	0	0	0	0	0	0	15880	957	33	4		4	TENC1	12	53451107	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	50979	53451107	80400788	987	156572											
TENC1	23371	broad.mit.edu	37	chr12	53451395	53451395	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctatctggctccatcagaaTgaacagcagccctctcttcc	7	15	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	53451395	C	C	53451395	3	2	194	1	0	0	0	0	1	0	0	0	15880	1464	51	5	1045	5	TENC1	12	53451395	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	288	53451395	80400500	988	156573											
HOXC13	3229	broad.mit.edu	37	chr12	54338891	54338891	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagagaaggaatacgcggctAgcaagttcatcaccaaagag	11	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	54338891	G	G	54338891	3	3	194	1	0	0	0	0	1	0	0	0	7379	420	15	5	850	5	HOXC13	12	54338891	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	887496	54338891	79513004	989	156574											
HNRNPA1	3178	broad.mit.edu	37	chr12	54675174	54675174	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccccccactctagtctcCtaaagagcccgaacagctga	6	18	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	54675174	G	G	54675174	3	3	194	1	0	0	0	0	1	0	0	0	7324	681	24	4	26	4	HNRNPA1	12	54675174	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	336283	54675174	79176721	990	156575											
KIAA0748	9840	broad.mit.edu	37	chr12	55355133	55355133	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtggcaggtagctgtaGgggaaggaggctgagtgtac	20	5	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	55355133	T	T	55355133	1	4	194	0	1	0	0	0	0	0	0	0	8260	1015	35	2		2	KIAA0748	12	55355133	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	679959	55355133	78496762	991	156576											
OR9K2	441639	broad.mit.edu	37	chr12	55523797	55523797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgatcctcggctgaacaCaccaatgtattttttcctag	7	11	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55523797	A	A	55523797	3	1	194	1	0	0	0	0	1	0	0	0	11348	478	17	3	247	3	OR9K2	12	55523797	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	168664	55523797	78328098	992	156577											
OR6C2	341416	broad.mit.edu	37	chr12	55846499	55846499	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctccagctcgaattctgtGactccaatgccattgatcat	7	13	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	55846499	C	C	55846499	3	2	194	1	0	0	0	0	1	0	0	0	11285	1290	45	4	504	4	OR6C2	12	55846499	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	322702	55846499	78005396	993	156578											
OR6C4	341418	broad.mit.edu	37	chr12	55945160	55945160	+	Frame_Shift_Del	DEL	C	-	-													atcaccctcaccttactagaCccccacctccagacccccat							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	55945160	-	-	55945160	7	5	194	1	0	1	0	1	0	0	0	0	11287	506	18	0	152	0	OR6C4	12	55945160	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	98661	55945160	77906735	994	156579											
RDH16	8608	broad.mit.edu	37	chr12	57346020	57346020	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgctccatttgttcagcTgatttcttatctgttaagaa	6	8	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	57346020	A	A	57346020	2	1	194	1	0	0	0	0	0	0	0	1	13302	1567	55	5		5	RDH16	12	57346020	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	1400860	57346020	76505875	995	156580											
SRGAP1	57522	broad.mit.edu	37	chr12	64536211	64536211	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccacccctgccacttccaCggaatctctcagccctttgc	5	20	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	64536211	T	T	64536211	3	4	194	1	0	0	0	0	1	0	0	0	15263	536	19	4	3103	4	SRGAP1	12	64536211	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	7190191	64536211	69315684	996	156581											
LGR5	8549	broad.mit.edu	37	chr12	71977541	71977541	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgacttcaacagttttcaGatcccctctgtacatttccc	6	13	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71977541	A	A	71977541	3	1	194	1	0	0	0	0	1	0	0	0	8829	942	33	4	1821	4	LGR5	12	71977541	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	7441330	71977541	61874354	997	156582											
TRHDE	29953	broad.mit.edu	37	chr12	72680629	72680629	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttgaggaagatggatgGgttacggatcacttttcaca	13	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72680629	T	T	72680629	3	4	194	1	0	0	0	0	1	0	0	0	16603	1241	43	2	954	2	TRHDE	12	72680629	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	703088	72680629	61171266	998	156583											
NAV3	89795	broad.mit.edu	37	chr12	78400307	78400307	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttctccaagtgccagcaAgccctggcgcagcaagtcca	9	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	78400307	T	T	78400307	3	4	194	1	0	0	0	0	1	0	0	0	10279	72	3	5	1019	5	NAV3	12	78400307	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	5719678	78400307	55451588	999	156584											
NAV3	89795	broad.mit.edu	37	chr12	78400665	78400665	+	Frame_Shift_Del	DEL	A	-	-													tcacctaagttggcccctccAaaagctggaagcaaaaatct					rs35015855		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	78400665	-	-	78400665	7	5	194	1	0	1	0	1	0	0	0	0	10279	117	5	0	1377	0	NAV3	12	78400665	Frame_Shift_Del	DEL	A	TCGA-67-3771-01A-01D-1040-01	358	78400665	55451230	1000	156585											
NAV3	89795	broad.mit.edu	37	chr12	78574751	78574751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaatcctcaagcagcaCctcctcttcatcttccaggc	6	16	5	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	78574751	A	A	78574751	3	1	194	1	0	0	0	0	1	0	0	0	10279	507	18	3	5666	3	NAV3	12	78574751	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	174086	78574751	55277144	1001	156586											
PAWR	5074	broad.mit.edu	37	chr12	80015034	80015034	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttctactattaatagacTgtttcgataatatgtgaaaa	5	4	1	2	rs2307224		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	80015034	A	A	80015034	1	1	194	0	1	0	0	0	0	0	0	0	11571	1595	55	5		5	PAWR	12	80015034	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1440283	80015034	53836861	1002	156587											
APAF1	317	broad.mit.edu	37	chr12	99053214	99053214	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatcatgcctttttcctgCtgttctatagggaggataag	9	8	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	99053214	T	T	99053214	1	4	194	0	1	0	0	0	0	0	0	0	757	812	28	4		4	APAF1	12	99053214	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	19038180	99053214	34798681	1003	156588											
APAF1	317	broad.mit.edu	37	chr12	99096994	99096994	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttaaagtatatgtataTtgatccatattttgtttatg	5	2	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	99096994	G	G	99096994	1	3	194	0	1	0	0	0	0	0	0	0	757	1508	52	5		5	APAF1	12	99096994	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	43780	99096994	34754901	1004	156589											
GOLGA2B	55592	broad.mit.edu	37	chr12	100561198	100561198	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgtatctctctccgtttgTagttatctaactgactccat	5	11	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	100561198	C	C	100561198	1	2	194	0	1	0	0	0	0	0	0	0	6617	1653	57	5		5	GOLGA2B	12	100561198	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1464204	100561198	33290697	1005	156590											
NR1H4	9971	broad.mit.edu	37	chr12	100934574	100934574	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgggcattctgacctattGgaagaaagaattcgaaatag	10	6	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	100934574	A	A	100934574	2	1	194	1	0	0	0	0	0	0	0	1	10714	1339	47	4		4	NR1H4	12	100934574	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	373376	100934574	32917321	1006	156591											
NR1H4	9971	broad.mit.edu	37	chr12	100957082	100957082	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaagcttcaggagccacttCttgatgtgctacaaaagttg	10	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	100957082	T	T	100957082	3	4	194	1	0	0	0	0	1	0	0	0	10714	913	32	4	1268	4	NR1H4	12	100957082	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	22508	100957082	32894813	1007	156592											
MYBPC1	4604	broad.mit.edu	37	chr12	102060588	102060588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccaggtaaagtattccGtgaagctctcaaattttctt	7	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	102060588	T	T	102060588	1	4	194	0	1	0	0	0	0	0	0	0	10105	1160	40	3		3	MYBPC1	12	102060588	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1103506	102060588	31791307	1008	156593											
SLC41A2	84102	broad.mit.edu	37	chr12	105198867	105198867	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatttaagagttttgaaaaaGagccataagtggttgtcgtg	12	3	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	105198867	C	C	105198867	1	2	194	0	1	0	0	0	0	0	0	0	14744	957	33	4		4	SLC41A2	12	105198867	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	3138279	105198867	28653028	1009	156594											
KIAA1033	23325	broad.mit.edu	37	chr12	105515907	105515907	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcctcaaggttactgaaatCtgtccatcacaatccttcaa	4	12	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	105515907	G	G	105515907	3	3	194	1	0	0	0	0	1	0	0	0	8276	913	32	4	715	4	KIAA1033	12	105515907	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	317040	105515907	28335988	1010	156595											
POLR3B	55703	broad.mit.edu	37	chr12	106848433	106848433	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagttgctgtgatgagctAtagtggctatgatattgaag	12	4	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	106848433	G	G	106848433	3	3	194	1	0	0	0	0	1	0	0	0	12324	449	16	5	2315	5	POLR3B	12	106848433	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	1332526	106848433	27003462	1011	156596											
CRY1	1407	broad.mit.edu	37	chr12	107395162	107395162	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaacctacaagaaagaaaaGaaaaaaacatcattcttccg	4	8	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	107395162	C	C	107395162	1	2	194	0	1	0	0	0	0	0	0	0	3935	957	33	4		4	CRY1	12	107395162	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	546729	107395162	26456733	1012	156597											
CORO1C	23603	broad.mit.edu	37	chr12	109055932	109055932	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattttctgggatctgccaTacctgttggacaaggaagaa	10	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	109055932	C	C	109055932	2	2	194	1	0	0	0	0	0	0	0	1	3787	1393	49	5		5	CORO1C	12	109055932	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	1660770	109055932	24795963	1013	156598											
GLTP	51228	broad.mit.edu	37	chr12	110290713	110290713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgtattttgagcgacagCaggaaggacatcagctttcg	13	7	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	110290713	A	A	110290713	1	1	194	0	1	0	0	0	0	0	0	0	6535	725	25	3		3	GLTP	12	110290713	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1234781	110290713	23561182	1014	156599											
NOS1	4842	broad.mit.edu	37	chr12	117660523	117660523	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggctgctgggggttaccttTggtttgtctggctcccggga	17	9	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	117660523	A	A	117660523	2	1	194	1	0	0	0	0	0	0	0	1	10636	1799	63	5		5	NOS1	12	117660523	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	7369810	117660523	16191372	1015	156600											
CABP1	9478	broad.mit.edu	37	chr12	121098917	121098917	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aataagcaccagtgagctgcGagaggctatgaggaagctcc	13	9	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	121098917	A	A	121098917	3	1	194	1	0	0	0	0	1	0	0	0	2557	1058	37	4	1234	4	CABP1	12	121098917	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	3438394	121098917	12752978	1016	156601											
KDM2B	84678	broad.mit.edu	37	chr12	122012565	122012565	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagctagactaccctgggcCcggggggaagccatttttcc	13	12	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	122012565	G	G	122012565	1	3	194	0	1	0	0	0	0	0	0	0	8195	638	22	4		4	KDM2B	12	122012565	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	913648	122012565	11839330	1017	156602											
LRRC43	254050	broad.mit.edu	37	chr12	122674674	122674674	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacggtcctgctcaccttcCaggcccaacctcgtctccct	7	19	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	122674674	G	G	122674674	1	3	194	0	1	0	0	0	0	0	0	0	9088	609	21	4		4	LRRC43	12	122674674	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	662109	122674674	11177221	1018	156603											
CCDC62	84660	broad.mit.edu	37	chr12	123308005	123308005	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcagtattcatcgtgatcacGagtaagtcacctttgcttat	7	9	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	123308005	A	A	123308005	1	1	194	0	1	0	0	0	0	0	0	0	2861	1072	37	4		4	CCDC62	12	123308005	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	633331	123308005	10543890	1019	156604											
PITPNM2	57605	broad.mit.edu	37	chr12	123485803	123485803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtacggctctgctctgacCgttcctcaacaggacggcca	11	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	123485803	A	A	123485803	1	1	194	0	1	0	0	0	0	0	0	0	12046	667	23	1		1	PITPNM2	12	123485803	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	177798	123485803	10366092	1020	156605											
SBNO1	55206	broad.mit.edu	37	chr12	123801939	123801939	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaataaagtcacttttgCataagaacaagcaggccagt	8	7	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	123801939	T	T	123801939	1	4	194	0	1	0	0	0	0	0	0	0	13974	725	25	4		4	SBNO1	12	123801939	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	316136	123801939	10049956	1021	156606											
SBNO1	55206	broad.mit.edu	37	chr12	123821056	123821056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgcaacacagaaagagCacaatcaatcccaaatccag	5	13	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	123821056	A	A	123821056	1	1	194	0	1	0	0	0	0	0	0	0	13974	725	25	3		3	SBNO1	12	123821056	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	19117	123821056	10030839	1022	156607											
DHX37	57647	broad.mit.edu	37	chr12	125453184	125453184	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagtcactgggaactgcCtggattccacctgtgggacg	13	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	125453184	A	A	125453184	3	1	194	1	0	0	0	0	1	0	0	0	4550	681	24	2	2241	2	DHX37	12	125453184	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1632128	125453184	8398711	1023	156608											
TMEM132B	114795	broad.mit.edu	37	chr12	126137061	126137061	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaccgagtcaccatcgcGgagctgggagtgcagctcgt	15	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	126137061	T	T	126137061	2	4	194	1	0	0	0	0	0	0	0	1	16169	1103	39	1		1	TMEM132B	12	126137061	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	683877	126137061	7714834	1024	156609											
GPR133	283383	broad.mit.edu	37	chr12	131439264	131439264	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcctagtgcaggtatcTcaggaacagcccacttgttc	9	14	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	131439264	A	A	131439264	1	1	194	0	1	0	0	0	0	0	0	0	6708	1566	54	5		5	GPR133	12	131439264	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	5302203	131439264	2412631	1025	156610											
EP400	57634	broad.mit.edu	37	chr12	132539638	132539638	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgccttatgcccgcctgtctCcgcaggtgccgtgagtggaa	13	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	132539638	G	G	132539638	1	3	194	0	1	0	0	0	0	0	0	0	5191	870	30	4		4	EP400	12	132539638	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1100374	132539638	1312257	1026	156611											
EP400	57634	broad.mit.edu	37	chr12	132561057	132561057	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggctttttttgttttgtcAaaggttgcaaaacttcctca	7	7	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	132561057	T	T	132561057	1	4	194	0	1	0	0	0	0	0	0	0	5191	145	5	5		5	EP400	12	132561057	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	21419	132561057	1290838	1027	156612											
EP400	57634	broad.mit.edu	37	chr12	132561163	132561163	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgcatagacaaagtggaaAcctcacatttcccaggtcag	9	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	132561163	T	T	132561163	1	4	194	0	1	0	0	0	0	0	0	0	5191	58	2	5		5	EP400	12	132561163	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	106	132561163	1290732	1028	156613											
NOC4L	79050	broad.mit.edu	37	chr12	132631995	132631995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagatcccaggatggccCcgtagtgggggcggggcctg	19	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	132631995	A	A	132631995	1	1	194	0	1	0	0	0	0	0	0	0	10610	638	22	2		2	NOC4L	12	132631995	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	70832	132631995	1219900	1029	156614											
ATP12A	479	broad.mit.edu	37	chr13	25276003	25276003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactacagagtaggtattaCtgaaccatccccactttggc	8	12	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	25276003	A	A	25276003	1	1	194	0	1	0	0	0	0	0	0	0	1126	580	20	3		3	ATP12A	13	25276003	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01		25276003	89893875	1030	156615											
ATP8A2	51761	broad.mit.edu	37	chr13	26155990	26155990	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggagccacagccatagaaGatcgccttcaagcaggagtt	11	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26155990	T	T	26155990	3	4	194	1	0	0	0	0	1	0	0	0	1197	942	33	3	2131	3	ATP8A2	13	26155990	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	879987	26155990	89013888	1031	156616											
FLT3	2322	broad.mit.edu	37	chr13	28578214	28578214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttcgacctgagcctgcGgagagagtagccccaaatcc	10	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	28578214	T	T	28578214	3	4	194	1	0	0	0	0	1	0	0	0	6000	1116	39	1	28	1	FLT3	13	28578214	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2422224	28578214	86591664	1032	156617											
FLT1	2321	broad.mit.edu	37	chr13	29001982	29001982	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcatcctcttcagttaCgtccttgataattaacgagt	6	12	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	29001982	G	G	29001982	3	3	194	1	0	0	0	0	1	0	0	0	5999	536	19	4	3184	4	FLT1	13	29001982	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	423768	29001982	86167896	1033	156618											
DCLK1	9201	broad.mit.edu	37	chr13	36699915	36699915	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccttccaccagttggtcCaggctggaaatcttcttgag	9	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	36699915	G	G	36699915	2	3	194	1	0	0	0	0	0	0	0	1	4324	581	21	4		4	DCLK1	13	36699915	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	7697933	36699915	78469963	1034	156619											
TRPC4	7223	broad.mit.edu	37	chr13	38266182	38266182	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgacgatggttggtggtggAccttgcctgttcaagtctga	14	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	38266182	T	T	38266182	2	4	194	1	0	0	0	0	0	0	0	1	16705	262	10	5		5	TRPC4	13	38266182	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	1566267	38266182	76903696	1035	156620											
FREM2	341640	broad.mit.edu	37	chr13	39448549	39448549	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaacctgaattaattttTggaaggaatctgtacataag	8	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	39448549	C	C	39448549	1	2	194	0	1	0	0	0	0	0	0	0	6105	1827	63	5		5	FREM2	13	39448549	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1182367	39448549	75721329	1036	156621											
NAA16	79612	broad.mit.edu	37	chr13	41892886	41892886	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctattaaagtactattaagaGaataagagaataattttgtg	7	2	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	41892886	C	C	41892886	1	2	194	0	1	0	0	0	0	0	0	0	10213	957	33	4		4	NAA16	13	41892886	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2444337	41892886	73276992	1037	156622											
NAA16	79612	broad.mit.edu	37	chr13	41929421	41929421	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatcacagtaatgctctttTatgtatattatgtgtgtgct	7	5	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	41929421	C	C	41929421	1	2	194	0	1	0	0	0	0	0	0	0	10213	1769	61	5		5	NAA16	13	41929421	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	36535	41929421	73240457	1038	156623											
RCBTB1	55213	broad.mit.edu	37	chr13	50115772	50115772	+	Intron	DEL	T	-	-													gaatatgaggggatatattcTccaccatgcggctcgtccat							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	50115772	-	-	50115772	6	5	194	0	1	1	0	1	0	0	0	0	13279	1566	54	0		0	RCBTB1	13	50115772	Intron	DEL	T	TCGA-67-3771-01A-01D-1040-01	8186351	50115772	65054106	1039	156624											
RCBTB1	55213	broad.mit.edu	37	chr13	50116015	50116015	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcagcaatttttaaaaaaGaaaaaaaaattacctaatta	3	5	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	50116015	C	C	50116015	1	2	194	0	1	0	0	0	0	0	0	0	13279	957	33	4		4	RCBTB1	13	50116015	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	243	50116015	65053863	1040	156625											
ATP7B	540	broad.mit.edu	37	chr13	52511514	52511514	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgaatgctagccaccaCatccagcaaatcattctgat	7	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52511514	A	A	52511514	3	1	194	1	0	0	0	0	1	0	0	0	1195	478	17	3	490	3	ATP7B	13	52511514	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2395499	52511514	62658364	1041	156626											
KLHL1	57626	broad.mit.edu	37	chr13	70681521	70681521	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcccaggagccccttgcTgcagcctcgtggcaactgga	12	16	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	70681521	G	G	70681521	3	3	194	1	0	0	0	0	1	0	0	0	8436	1580	55	5	1979	5	KLHL1	13	70681521	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	18170007	70681521	44488357	1042	156627											
CLN5	1203	broad.mit.edu	37	chr13	77566091	77566091	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcggggaggtgtcatgcGccggaacctgcgcttggggc	20	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	77566091	C	C	77566091	3	2	194	1	0	0	0	0	1	0	0	0	3576	1087	38	4	7	4	CLN5	13	77566091	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6884570	77566091	37603787	1043	156628											
MYCBP2	23077	broad.mit.edu	37	chr13	77695684	77695684	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttacgtgctattccctattCatacaacaaagagagaaaat	5	9	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	77695684	G	G	77695684	1	3	194	0	1	0	0	0	0	0	0	0	10112	841	29	4		4	MYCBP2	13	77695684	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	129593	77695684	37474194	1044	156629											
MYCBP2	23077	broad.mit.edu	37	chr13	77765894	77765894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgggcccatgccacataCcaccacccagcttgcaggag	9	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77765894	A	A	77765894	3	1	194	1	0	0	0	0	1	0	0	0	10112	508	18	3	10270	3	MYCBP2	13	77765894	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	70210	77765894	37403984	1045	156630											
GPC6	10082	broad.mit.edu	37	chr13	94958404	94958404	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcacagattgataaccatGgcggatgctttgttttacca	8	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	94958404	T	T	94958404	1	4	194	0	1	0	0	0	0	0	0	0	6667	1363	47	2		2	GPC6	13	94958404	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	17192510	94958404	20211474	1046	156631											
RAP2A	5911	broad.mit.edu	37	chr13	98086692	98086694	+	5'UTR	DEL	GGC	-	-													cggcgtaggtctatgtcgcgGgcggcggcggcggcggcggc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	98086694	-	-	98086692	6	5	194	0	1	1	0	1	0	0	0	0	13148	1247	43	0		0	RAP2A	13	98086692	5'UTR	DEL	GGC	TCGA-67-3771-01A-01D-1040-01	3128288	98086692	17083186	1047	156632											
FARP1	10160	broad.mit.edu	37	chr13	98996183	98996183	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttggtggggggctgggcAggggccagtctaaatgattg	18	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	98996183	T	T	98996183	1	4	194	0	1	0	0	0	0	0	0	0	5733	203	7	5		5	FARP1	13	98996183	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	909491	98996183	16173695	1048	156633											
CLYBL	171425	broad.mit.edu	37	chr13	100515473	100515473	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttataagcaaaggaaatgttGagcaccatttgttatctgta	8	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	100515473	C	C	100515473	1	2	194	0	1	0	0	0	0	0	0	0	3605	1305	45	4		4	CLYBL	13	100515473	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1519290	100515473	14654405	1049	156634											
CLYBL	171425	broad.mit.edu	37	chr13	100523170	100523170	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttcgttgtttcgtggttccGatgttattaatattcttgta	9	5	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	100523170	A	A	100523170	1	1	194	0	1	0	0	0	0	0	0	0	3605	1073	37	4		4	CLYBL	13	100523170	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	7697	100523170	14646708	1050	156635											
NALCN	259232	broad.mit.edu	37	chr13	101747914	101747914	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttcagaatatttttttatGatatacttaccaaacacggg	5	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	101747914	T	T	101747914	1	4	194	0	1	0	0	0	0	0	0	0	10242	1305	45	3		3	NALCN	13	101747914	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1224744	101747914	13421964	1051	156636											
COL4A1	1282	broad.mit.edu	37	chr13	110821965	110821965	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaataaaaatctacaaatCaataactcacaggcatgccc	3	10	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	110821965	G	G	110821965	1	3	194	0	1	0	0	0	0	0	0	0	3721	841	29	4		4	COL4A1	13	110821965	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	9074051	110821965	4347913	1052	156637											
COL4A1	1282	broad.mit.edu	37	chr13	110839027	110839027	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcacactatttatttacttCatctaccctcccaggagggc	5	14	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	110839027	A	A	110839027	1	1	194	0	1	0	0	0	0	0	0	0	3721	841	29	3		3	COL4A1	13	110839027	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	17062	110839027	4330851	1053	156638											
ARHGEF7	8874	broad.mit.edu	37	chr13	111767915	111767915	+	Frame_Shift_Del	DEL	G	-	-													gttacgtggctcatcactctGggggtgctggagtcgcccaa					rs144455445		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	111767915	-	-	111767915	7	5	194	1	0	1	0	1	0	0	0	0	913	1335	47	0	44	0	ARHGEF7	13	111767915	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	928888	111767915	3401963	1054	156639											
ATP11A	23250	broad.mit.edu	37	chr13	113470540	113470540	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cataaagtaaggggccttttCattagactccagggcaggat	11	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113470540	T	T	113470540	1	4	194	0	1	0	0	0	0	0	0	0	1123	841	29	4		4	ATP11A	13	113470540	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1702625	113470540	1699338	1055	156640											
ATP11A	23250	broad.mit.edu	37	chr13	113490624	113490624	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtggttgtgttttattctGatgactaaattctacaggag	11	4	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113490624	T	T	113490624	1	4	194	0	1	0	0	0	0	0	0	0	1123	1305	45	3		3	ATP11A	13	113490624	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	20084	113490624	1679254	1056	156641											
MCF2L	23263	broad.mit.edu	37	chr13	113719264	113719264	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccaaggccatcgaaagtttCgccctcatggtgaagcagac	10	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113719264	T	T	113719264	2	4	194	1	0	0	0	0	0	0	0	1	9472	883	31	4		4	MCF2L	13	113719264	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	228640	113719264	1450614	1057	156642											
PCID2	55795	broad.mit.edu	37	chr13	113838759	113838759	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctttcaggtttgagctgtCaattgctctaattaggggtt	11	6	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	113838759	T	T	113838759	3	4	194	1	0	0	0	0	1	0	0	0	11673	826	29	4	637	4	PCID2	13	113838759	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	119495	113838759	1331119	1058	156643											
GAS6	2621	broad.mit.edu	37	chr13	114542677	114542677	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagatggagggagaccccGcctttgtcttcagcctcacg	13	13	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	114542677	A	A	114542677	1	1	194	0	1	0	0	0	0	0	0	0	6311	1102	38	4		4	GAS6	13	114542677	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	703918	114542677	627201	1059	156644											
CMTM5	116173	broad.mit.edu	37	chr14	23846328	23846328	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctctcccggggccctgtggGcaagcctcctgcttcacttt	10	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	23846328	C	C	23846328	1	2	194	0	1	0	0	0	0	0	0	0	3618	1218	42	4		4	CMTM5	14	23846328	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01		23846328	83503212	1060	156645											
MYH6	4624	broad.mit.edu	37	chr14	23854991	23854991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttaatataatggttctGcagccaccacagatgagagt	8	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	23854991	T	T	23854991	1	4	194	0	1	0	0	0	0	0	0	0	10132	1334	46	3		3	MYH6	14	23854991	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	8663	23854991	83494549	1061	156646											
MYH6	4624	broad.mit.edu	37	chr14	23855953	23855953	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagagctgagaagagatGgggaggtgggatctgcaccc	17	6	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	23855953	T	T	23855953	1	4	194	0	1	0	0	0	0	0	0	0	10132	1363	47	2		2	MYH6	14	23855953	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	962	23855953	83493587	1062	156647											
CPNE6	9362	broad.mit.edu	37	chr14	24546933	24546933	+	Frame_Shift_Del	DEL	C	-	-													gctacgactcccagccctagCccgtgactgcctccctccgg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	24546933	-	-	24546933	7	5	194	1	0	1	0	1	0	0	0	0	3848	738	26	0	1726	0	CPNE6	14	24546933	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	690980	24546933	82802607	1063	156648											
DCAF11	80344	broad.mit.edu	37	chr14	24586028	24586028	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagcctcaaacctcaaaatGagtaccaagtggtctaagag	8	10	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	24586028	C	C	24586028	1	2	194	0	1	0	0	0	0	0	0	0	4295	1305	45	4		4	DCAF11	14	24586028	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	39095	24586028	82763512	1064	156649											
IRF9	10379	broad.mit.edu	37	chr14	24631533	24631533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatgctgccttcttcaaGgtgaaagggcctggaaacca	12	10	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	24631533	T	T	24631533	3	4	194	1	0	0	0	0	1	0	0	0	7907	1014	35	2	182	2	IRF9	14	24631533	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	45505	24631533	82718007	1065	156650											
KHNYN	23351	broad.mit.edu	37	chr14	24901483	24901483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacagggcagctcagtcccGaggagcctccctcctccagc	10	18	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	24901483	T	T	24901483	3	4	194	1	0	0	0	0	1	0	0	0	8220	1058	37	3	1022	3	KHNYN	14	24901483	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	269950	24901483	82448057	1066	156651											
NPAS3	64067	broad.mit.edu	37	chr14	34269356	34269356	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggcggcagcgccagccgcCggcgcctgtccagcgcgtcg	17	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	34269356	G	G	34269356	3	3	194	1	0	0	0	0	1	0	0	0	10659	643	23	4	1944	4	NPAS3	14	34269356	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	9367873	34269356	73080184	1067	156652											
LRFN5	145581	broad.mit.edu	37	chr14	42355849	42355849	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggaaaaaattcttttttaTctgtttctcattggcatagc	6	6	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	42355849	A	A	42355849	4	1	194	1	0	0	0	0	0	1	0	0	9028	1442	50	5	23	5	LRFN5	14	42355849	Nonsense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	8086493	42355849	64993691	1068	156653											
FAM179B	23116	broad.mit.edu	37	chr14	45523813	45523813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgatagtagtctcatttGgatgttttcataaactaccc	7	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	45523813	T	T	45523813	1	4	194	0	1	0	0	0	0	0	0	0	5551	1363	47	2		2	FAM179B	14	45523813	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3167964	45523813	61825727	1069	156654											
SAMD4A	23034	broad.mit.edu	37	chr14	55226864	55226864	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctaacagaggtcttcctGctctcaccgtccaggacatc	8	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55226864	A	A	55226864	1	1	194	0	1	0	0	0	0	0	0	0	13932	1334	46	4		4	SAMD4A	14	55226864	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	9703051	55226864	52122676	1070	156655											
DACT1	51339	broad.mit.edu	37	chr14	59112366	59112366	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaaaatggatggctacaTtctgagcctggtccagaaaa	10	8	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	59112366	A	A	59112366	3	1	194	1	0	0	0	0	1	0	0	0	4255	1493	52	5	1039	5	DACT1	14	59112366	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	3885502	59112366	48237174	1071	156656											
SYT16	83851	broad.mit.edu	37	chr14	62550717	62550717	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagctcttgaaacaaataTgtcagttcctaatgcaggga	9	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	62550717	C	C	62550717	1	2	194	0	1	0	0	0	0	0	0	0	15591	1479	51	5		5	SYT16	14	62550717	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	3438351	62550717	44798823	1072	156657											
RHOJ	57381	broad.mit.edu	37	chr14	63749764	63749764	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgttaacagggaaaaagactCtatgatgtcacagtttaaaa	8	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	63749764	A	A	63749764	1	1	194	0	1	0	0	0	0	0	0	0	13450	928	32	3		3	RHOJ	14	63749764	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1199047	63749764	43599776	1073	156658											
SYNE2	23224	broad.mit.edu	37	chr14	64606758	64606758	+	Frame_Shift_Del	DEL	G	-	-													ctcaatgtgtctcaggacttGgatacaatcagaagcaacat							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	64606758	-	-	64606758	7	5	194	1	0	1	0	1	0	0	0	0	15565	1339	47	0	15257	0	SYNE2	14	64606758	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	856994	64606758	42742782	1074	156659											
FUT8	2530	broad.mit.edu	37	chr14	66200212	66200212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattattgtgactcaggtgCaatttttctgatactcagta	7	7	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	66200212	A	A	66200212	1	1	194	0	1	0	0	0	0	0	0	0	6170	725	25	3		3	FUT8	14	66200212	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1593454	66200212	41149328	1075	156660											
MAP3K9	4293	broad.mit.edu	37	chr14	71227747	71227747	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcactgcctttggaaaacaTggaggcccggatgacttcgg	12	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71227747	A	A	71227747	3	1	194	1	0	0	0	0	1	0	0	0	9349	1464	51	5	2427	5	MAP3K9	14	71227747	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	5027535	71227747	36121793	1076	156661											
DPF3	8110	broad.mit.edu	37	chr14	73190390	73190390	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatatcctcttccaaatccTcttcttcattcccttcttct	1	15	6	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	73190390	C	C	73190390	3	2	194	1	0	0	0	0	1	0	0	0	4758	1551	54	5	617	5	DPF3	14	73190390	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1962643	73190390	34159150	1077	156662											
YLPM1	56252	broad.mit.edu	37	chr14	75265292	75265292	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaagtgccaggtggtcttCaagggagccaggacaggggt	17	7	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	75265292	T	T	75265292	4	4	194	1	0	0	0	0	0	1	0	0	17613	827	29	4	3310	4	YLPM1	14	75265292	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2074902	75265292	32084248	1078	156663											
TTLL5	23093	broad.mit.edu	37	chr14	76211508	76211508	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcccgggagaaagggcCagggaagttgggtggttctg	18	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	76211508	T	T	76211508	3	4	194	1	0	0	0	0	1	0	0	0	16856	594	21	4	1410	4	TTLL5	14	76211508	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	946216	76211508	31138032	1079	156664											
TTLL5	23093	broad.mit.edu	37	chr14	76243112	76243112	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagaacaaatggctgaaaAgaaatcaaagaagaaagttg	9	4	1	5			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	76243112	G	G	76243112	3	3	194	1	0	0	0	0	1	0	0	0	16856	72	3	5	2392	5	TTLL5	14	76243112	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	31604	76243112	31106428	1080	156665											
ESRRB	2103	broad.mit.edu	37	chr14	76966335	76966335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccggggatccccaatccaCgcccttctagtccaaccccc	6	22	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	76966335	A	A	76966335	3	1	194	1	0	0	0	0	1	0	0	0	5303	536	19	3	1452	3	ESRRB	14	76966335	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	723223	76966335	30383205	1081	156666											
STON2	85439	broad.mit.edu	37	chr14	81879214	81879214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagctttcttcttagaggCgccacggcttccatagcgat	9	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	81879214	A	A	81879214	1	1	194	0	1	0	0	0	0	0	0	0	15436	783	27	3		3	STON2	14	81879214	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4912879	81879214	25470326	1082	156667											
KCNK10	54207	broad.mit.edu	37	chr14	88654186	88654187	+	Intron	DNP	CC	AA	AA													aacatgaggaagcctatgacCcgccccccgctccccctgca							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AA	88654187	AA	AA	88654186	1	1	194	0	1	0	0	0	0	0	0	0	8129	638	22	2		2	KCNK10	14	88654186	Intron	DNP	CC	TCGA-67-3771-01A-01D-1040-01	6774972	88654186	18695354	1083	156668											
KIAA1409	57578	broad.mit.edu	37	chr14	94083525	94083525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccttagtggttcaggtgCtcaaatactgctcttgtcct	8	12	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	94083525	A	A	94083525	3	1	194	1	0	0	0	0	1	0	0	0	8300	797	28	3	3666	3	KIAA1409	14	94083525	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	5429339	94083525	13266015	1084	156669											
KIAA1409	57578	broad.mit.edu	37	chr14	94083609	94083609	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccctaaagcctcacatcCggcagatgtggttgaaggcc	12	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	94083609	T	T	94083609	3	4	194	1	0	0	0	0	1	0	0	0	8300	643	23	4	3750	4	KIAA1409	14	94083609	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	84	94083609	13265931	1085	156670											
SERPINA6	866	broad.mit.edu	37	chr14	94770686	94770686	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggggaaacctcccgctctCcaaaacatttctgtgggatc	10	12	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	94770686	G	G	94770686	1	3	194	0	1	0	0	0	0	0	0	0	14206	870	30	4		4	SERPINA6	14	94770686	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	687077	94770686	12578854	1086	156671											
SERPINA9	327657	broad.mit.edu	37	chr14	94936017	94936017	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccagcctgcggtataggCggaaggcaaagtcggtgttg	15	8	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	94936017	A	A	94936017	3	1	194	1	0	0	0	0	1	0	0	0	14208	768	27	3	1108	3	SERPINA9	14	94936017	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	165331	94936017	12413523	1087	156672											
TNFAIP2	7127	broad.mit.edu	37	chr14	103592753	103592753	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgacttgcctagaggccccCaaaagttgcagtccacatca	8	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	103592753	T	T	103592753	1	4	194	0	1	0	0	0	0	0	0	0	16396	609	21	4		4	TNFAIP2	14	103592753	5'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	8656736	103592753	3756787	1088	156673											
KIAA0284	283638	broad.mit.edu	37	chr14	105344718	105344718	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcacacctgttgctgggCgtggacttcagcgctgggct	15	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	105344718	T	T	105344718	1	4	194	0	1	0	0	0	0	0	0	0	8236	783	27	4		4	KIAA0284	14	105344718	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1751965	105344718	2004822	1089	156674											
AHNAK2	113146	broad.mit.edu	37	chr14	105408231	105408231	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccagcctggacctccagGtcggcggaaggggcctgaat	16	12	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	105408231	A	A	105408231	2	1	194	1	0	0	0	0	0	0	0	1	415	1252	44	4		4	AHNAK2	14	105408231	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	63513	105408231	1941309	1090	156675											
AHNAK2	113146	broad.mit.edu	37	chr14	105416868	105416868	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagggacaggtccccctcCagctgcgcaccatccagctt	10	18	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	105416868	G	G	105416868	2	3	194	1	0	0	0	0	0	0	0	1	415	581	21	4		4	AHNAK2	14	105416868	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	8637	105416868	1932672	1091	156676											
AHNAK2	113146	broad.mit.edu	37	chr14	105419147	105419147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagggggctgaatgctgaGgtcagtggccttgaggtccc	18	8	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	105419147	T	T	105419147	3	4	194	1	0	0	0	0	1	0	0	0	415	1000	35	2	14750	2	AHNAK2	14	105419147	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2279	105419147	1930393	1092	156677											
BRF1	2972	broad.mit.edu	37	chr14	105678536	105678536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcatggcggcctcagccCaggctcccgaacgcctgccc	11	19	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	105678536	A	A	105678536	1	1	194	0	1	0	0	0	0	0	0	0	1519	609	21	2		2	BRF1	14	105678536	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	259389	105678536	1671004	1093	156678											
OR4M2	390538	broad.mit.edu	37	chr15	22369243	22369243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctatgccttccttctggCcttgttcaagaaactttcag	7	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	22369243	A	A	22369243	3	1	194	1	0	0	0	0	1	0	0	0	11170	739	26	3	670	3	OR4M2	15	22369243	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01		22369243	80162149	1094	156679											
ATP10A	57194	broad.mit.edu	37	chr15	25925894	25925894	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagacctcatgaatctgcaGggaagtgtggggtccacggc	14	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	25925894	A	A	25925894	1	1	194	0	1	0	0	0	0	0	0	0	1120	1015	35	4		4	ATP10A	15	25925894	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3556651	25925894	76605498	1095	156680											
APBA2	321	broad.mit.edu	37	chr15	29368186	29368186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctcatatcacagccctGcttagccttcaccttgtggg	9	13	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	29368186	T	T	29368186	1	4	194	0	1	0	0	0	0	0	0	0	759	1334	46	3		3	APBA2	15	29368186	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3442292	29368186	73163206	1096	156681											
RYR3	6263	broad.mit.edu	37	chr15	33992038	33992038	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagcagtgttggcctaggtgCgtaagtcttcttgtaacttc	11	8	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	33992038	G	G	33992038	1	3	194	0	1	0	0	0	0	0	0	0	13881	783	27	4		4	RYR3	15	33992038	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4623852	33992038	68539354	1097	156682											
RYR3	6263	broad.mit.edu	37	chr15	34021153	34021153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accgcgtttatggcattaagGatcaaacttttctgctccac	7	11	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	34021153	T	T	34021153	3	4	194	1	0	0	0	0	1	0	0	0	13881	1174	41	3	7315	3	RYR3	15	34021153	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	29115	34021153	68510239	1098	156683											
GOLGA8B	440270	broad.mit.edu	37	chr15	34823994	34823994	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaatgccccaggacaggcCcacccatgggacccggttat	10	16	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	34823994	A	A	34823994	1	1	194	0	1	0	0	0	0	0	0	0	6628	638	22	2		2	GOLGA8B	15	34823994	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	802841	34823994	67707398	1099	156684											
CASC5	57082	broad.mit.edu	37	chr15	40895066	40895066	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttttcttagactgtagttGctcttcctttttcctcatgt	5	10	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	40895066	C	C	40895066	1	2	194	0	1	0	0	0	0	0	0	0	2689	1334	46	4		4	CASC5	15	40895066	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	6071072	40895066	61636326	1100	156685											
PLA2G4D	283748	broad.mit.edu	37	chr15	42363779	42363779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaaaagagatcagcctcaGgccccagccagcggccccac	9	18	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	42363779	T	T	42363779	1	4	194	0	1	0	0	0	0	0	0	0	12099	1015	35	2		2	PLA2G4D	15	42363779	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1468713	42363779	60167613	1101	156686											
TGM7	116179	broad.mit.edu	37	chr15	43577271	43577271	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacgcttacggaaccacacCagtaactcctttattcccag	6	14	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	43577271	G	G	43577271	1	3	194	0	1	0	0	0	0	0	0	0	15958	609	21	4		4	TGM7	15	43577271	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1213492	43577271	58954121	1102	156687											
DUOX2	50506	broad.mit.edu	37	chr15	45397883	45397883	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagatctccaggatgcgttcCcgctgctgctttgtcacagc	10	13	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	45397883	G	G	45397883	2	3	194	1	0	0	0	0	0	0	0	1	4841	610	22	4		4	DUOX2	15	45397883	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1820612	45397883	57133509	1103	156688											
FBN1	2200	broad.mit.edu	37	chr15	48766916	48766916	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtttttaaaataagtaaTattcaaaagttgacttgcct	6	4	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	48766916	C	C	48766916	1	2	194	0	1	0	0	0	0	0	0	0	5759	1421	49	5		5	FBN1	15	48766916	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	3369033	48766916	53764476	1104	156689											
CEP152	22995	broad.mit.edu	37	chr15	49059596	49059597	+	Missense_Mutation	DNP	CT	TA	TA													cttctccaaagcatgctttgCtaataggctttcacgtattt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TA	49059597	TA	TA	49059596	3	4	194	1	0	0	0	0	1	0	0	0	3278	797	28	4	2925	4	CEP152	15	49059596	Missense_Mutation	DNP	CT	TCGA-67-3771-01A-01D-1040-01	292680	49059596	53471796	1105	156690											
GALK2	2585	broad.mit.edu	37	chr15	49611952	49611952	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccacatgagctgccgggaCatgtatgagtgcagctgccc	13	12	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	49611952	T	T	49611952	2	4	194	1	0	0	0	0	0	0	0	1	6266	477	17	4		4	GALK2	15	49611952	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	552356	49611952	52919440	1106	156691											
HDC	3067	broad.mit.edu	37	chr15	50534774	50534775	+	Missense_Mutation	DNP	GG	TT	TT													cttgtgcttggtggcatctgGggcctcttctgaaaagcagt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	50534775	TT	TT	50534774	3	4	194	1	0	0	0	0	1	0	0	0	7082	1232	43	2	320	2	HDC	15	50534774	Missense_Mutation	DNP	GG	TCGA-67-3771-01A-01D-1040-01	922822	50534774	51996618	1107	156692											
HDC	3067	broad.mit.edu	37	chr15	50540459	50540459	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacatgtctgacatgtgcttGaagattcttcaccccgaagg	9	10	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	50540459	C	C	50540459	3	2	194	1	0	0	0	0	1	0	0	0	7082	1299	45	4	877	4	HDC	15	50540459	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	5685	50540459	51990933	1108	156693											
HDC	3067	broad.mit.edu	37	chr15	50555455	50555455	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcatgatgattcgttcaaTgtccccaaagatgctgtccc	9	11	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	50555455	A	A	50555455	3	1	194	1	0	0	0	0	1	0	0	0	7082	1464	51	5	1851	5	HDC	15	50555455	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	14996	50555455	51975937	1109	156694											
LYSMD2	256586	broad.mit.edu	37	chr15	52017224	52017224	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttaagtccattaaacaacAaaggcttctctgatataact	5	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	52017224	G	G	52017224	3	3	194	1	0	0	0	0	1	0	0	0	9213	131	5	5	287	5	LYSMD2	15	52017224	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	1461769	52017224	50514168	1110	156695											
CSNK1G1	53944	broad.mit.edu	37	chr15	64499783	64499783	+	Frame_Shift_Del	DEL	C	-	-													agggcttccaaatcatctctCcggctttgctctaaaaggga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	64499783	-	-	64499783	7	5	194	1	0	1	0	1	0	0	0	0	3988	842	30	0	602	0	CSNK1G1	15	64499783	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	12482559	64499783	38031609	1111	156696											
IGDCC4	57722	broad.mit.edu	37	chr15	65676637	65676637	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggcagggggtcctcagGctccaggtcttggagatgga	18	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	65676637	T	T	65676637	3	4	194	1	0	0	0	0	1	0	0	0	7639	1203	42	3	293	3	IGDCC4	15	65676637	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1176854	65676637	36854755	1112	156697											
DPP8	54878	broad.mit.edu	37	chr15	65799772	65799772	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagttgcaagtacataatgCcttctatacactgcaatatt	5	9	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	65799772	G	G	65799772	1	3	194	0	1	0	0	0	0	0	0	0	4772	754	26	4		4	DPP8	15	65799772	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	123135	65799772	36731620	1113	156698											
C15orf44	81556	broad.mit.edu	37	chr15	65892078	65892078	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactaagctgtaaaatatgcCtaatcaaactaaaaacttag	4	7	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	65892078	T	T	65892078	1	4	194	0	1	0	0	0	0	0	0	0	1811	696	24	4		4	C15orf44	15	65892078	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	92306	65892078	36639314	1114	156699											
CLN6	54982	broad.mit.edu	37	chr15	68547178	68547178	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggaggggaataaccctgCagaaaatggagatgcccaaa	12	8	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	68547178	T	T	68547178	1	4	194	0	1	0	0	0	0	0	0	0	3577	725	25	4		4	CLN6	15	68547178	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2655100	68547178	33984214	1115	156700											
TLE3	7090	broad.mit.edu	37	chr15	70342515	70342515	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatccgctgaaatgtcaCaactcaagacagacgaggat	9	10	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	70342515	T	T	70342515	3	4	194	1	0	0	0	0	1	0	0	0	16063	478	17	4	82	4	TLE3	15	70342515	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1795337	70342515	32188877	1116	156701											
CD276	80381	broad.mit.edu	37	chr15	74003564	74003564	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtatgcacacatctgtgtgtGagaggctgagagggtgggta	17	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	74003564	C	C	74003564	1	2	194	0	1	0	0	0	0	0	0	0	3022	1305	45	4		4	CD276	15	74003564	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3661049	74003564	28527828	1117	156702											
CYP1A1	1543	broad.mit.edu	37	chr15	75014861	75014861	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagatgacattggtcactGataccaccacatacctgtag	7	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	75014861	A	A	75014861	3	1	194	1	0	0	0	0	1	0	0	0	4182	1294	45	4	984	4	CYP1A1	15	75014861	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1011297	75014861	27516531	1118	156703											
CYP1A1	1543	broad.mit.edu	37	chr15	75014929	75014929	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctcctgcaacgtgcttatCaggacctcagcctccttgct	8	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	75014929	G	G	75014929	2	3	194	1	0	0	0	0	0	0	0	1	4182	813	29	4		4	CYP1A1	15	75014929	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	68	75014929	27516463	1119	156704											
ETFA	2108	broad.mit.edu	37	chr15	76553566	76553566	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttcagggggacccacagcCttgcaagacagttggaaagg	15	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	76553566	G	G	76553566	1	3	194	0	1	0	0	0	0	0	0	0	5311	696	24	4		4	ETFA	15	76553566	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1538637	76553566	25977826	1120	156705											
ACSBG1	23205	broad.mit.edu	37	chr15	78500311	78500311	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacagcacagtttcccgcCctgccccaccctaccacccc	5	23	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	78500311	T	T	78500311	1	4	194	0	1	0	0	0	0	0	0	0	173	638	22	4		4	ACSBG1	15	78500311	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1946745	78500311	24031081	1121	156706											
MEX3B	84206	broad.mit.edu	37	chr15	82336941	82336941	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcttcgcccgcagcgcTttgattttacaacctacgaa	8	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	82336941	A	A	82336941	3	1	194	1	0	0	0	0	1	0	0	0	9603	1606	56	5	1443	5	MEX3B	15	82336941	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	3836630	82336941	20194451	1122	156707											
AP3B2	8120	broad.mit.edu	37	chr15	83332601	83332601	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgctcctcctcggactcCgatgtcatctcggactctga	8	15	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	83332601	A	A	83332601	2	1	194	1	0	0	0	0	0	0	0	1	747	639	23	1		1	AP3B2	15	83332601	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	995660	83332601	19198791	1123	156708											
FSD2	123722	broad.mit.edu	37	chr15	83451385	83451385	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccacagcctccccatcacgAtcatccagtggaatcaaatg	7	15	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	83451385	G	G	83451385	1	3	194	0	1	0	0	0	0	0	0	0	6131	348	12	5		5	FSD2	15	83451385	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	118784	83451385	19080007	1124	156709											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84442202	84442202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaataactggggaagatttgGgatatttctaccacatttgc	10	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	84442202	T	T	84442202	1	4	194	0	1	0	0	0	0	0	0	0	276	1247	43	2		2	ADAMTSL3	15	84442202	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	990817	84442202	18089190	1125	156710											
NTRK3	4916	broad.mit.edu	37	chr15	88522572	88522572	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaggaggcttaaaaggaGtttttaaaagccatgacgtc	10	6	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	88522572	T	T	88522572	1	4	194	0	1	0	0	0	0	0	0	0	10803	1044	36	3		3	NTRK3	15	88522572	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4080370	88522572	14008820	1126	156711											
ISG20	3669	broad.mit.edu	37	chr15	89198743	89198743	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccgccgagggctgccccGcctggctgtgtcagactgaa	14	15	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	89198743	A	A	89198743	3	1	194	1	0	0	0	0	1	0	0	0	7924	1087	38	4	537	4	ISG20	15	89198743	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	676171	89198743	13332649	1127	156712											
MFGE8	4240	broad.mit.edu	37	chr15	89449995	89449995	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacctgttacccacatcctCcgcagcaggttcacctggac	7	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	89449995	A	A	89449995	2	1	194	1	0	0	0	0	0	0	0	1	9613	842	30	3		3	MFGE8	15	89449995	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	251252	89449995	13081397	1128	156713											
RHCG	51458	broad.mit.edu	37	chr15	90020012	90020012	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagaccgcatcctcaaagcAgttctcatctgaaggttgtc	9	11	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	90020012	T	T	90020012	3	4	194	1	0	0	0	0	1	0	0	0	13435	188	7	5	162	5	RHCG	15	90020012	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	570017	90020012	12511380	1129	156714											
ANPEP	290	broad.mit.edu	37	chr15	90346962	90346962	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggacagcgggtgggaGgaggccagtgcatccactgc	19	9	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	90346962	A	A	90346962	2	1	194	1	0	0	0	0	0	0	0	1	710	987	35	4		4	ANPEP	15	90346962	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	326950	90346962	12184430	1130	156715											
SEMA4B	10509	broad.mit.edu	37	chr15	90764744	90764744	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaccacccagagggcaGggatcctgttcacccagccc	10	17	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	90764744	A	A	90764744	1	1	194	0	1	0	0	0	0	0	0	0	14145	1015	35	4		4	SEMA4B	15	90764744	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	417782	90764744	11766648	1131	156716											
ADAMTS17	170691	broad.mit.edu	37	chr15	100695332	100695332	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagactccaatacttttgtcTtttggaagtacttttgattg	8	6	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	100695332	G	G	100695332	1	3	194	0	1	0	0	0	0	0	0	0	262	1624	56	5		5	ADAMTS17	15	100695332	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	9930588	100695332	1836060	1132	156717											
ALDH1A3	220	broad.mit.edu	37	chr15	101425404	101425404	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggataagacgtcacctaaggTccttagcatgttgaaattat	9	7	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	101425404	A	A	101425404	1	1	194	0	1	0	0	0	0	0	0	0	492	1682	58	5		5	ALDH1A3	15	101425404	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	730072	101425404	1105988	1133	156718											
AXIN1	8312	broad.mit.edu	37	chr16	347741	347741	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgggcgaggccatcacTggcgttgggggcagcgccaa	17	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	347741	C	C	347741	3	2	194	1	0	0	0	0	1	0	0	0	1241	1580	55	5	847	5	AXIN1	16	347741	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01		347741	90007012	1134	156719											
TPSD1	23430	broad.mit.edu	37	chr16	1306299	1306299	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgatgctcctccttgctccCcagatgctgagcctgctgct	9	16	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1306299	A	A	1306299	2	1	194	1	0	0	0	0	0	0	0	1	16549	610	22	2		2	TPSD1	16	1306299	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	958558	1306299	89048454	1135	156720											
PKD1	5310	broad.mit.edu	37	chr16	2164413	2164413	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggcagggcagacattctCaaagcgggcgctgacactgc	14	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	2164413	A	A	2164413	4	1	194	1	0	0	0	0	0	1	0	0	12058	835	29	3	10444	3	PKD1	16	2164413	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	858114	2164413	88190340	1136	156721											
ZSCAN10	84891	broad.mit.edu	37	chr16	3141885	3141885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaaggcagccctgcctgcCatatggctgcaaggacacac	11	13	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3141885	T	T	3141885	1	4	194	0	1	0	0	0	0	0	0	0	18356	609	21	4		4	ZSCAN10	16	3141885	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	977472	3141885	87212868	1137	156722											
MEFV	4210	broad.mit.edu	37	chr16	3294475	3294475	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctcccaagcccatctacctGagaagtactttgtgctcttc	6	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	3294475	C	C	3294475	4	2	194	1	0	0	0	0	0	1	0	0	9552	1294	45	4	637	4	MEFV	16	3294475	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	152590	3294475	87060278	1138	156723											
ZNF500	26048	broad.mit.edu	37	chr16	4802892	4802892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcttcctggtggggggcCgcctcttggctgatcaggcc	15	14	3	1	rs75619376	byFrequency;by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	4802892	A	A	4802892	3	1	194	1	0	0	0	0	1	0	0	0	18075	652	23	1	518	1	ZNF500	16	4802892	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1508417	4802892	85551861	1139	156724											
A2BP1	54715	broad.mit.edu	37	chr16	7760773	7760773	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccataaaaaccttccaAtgtggggagaaaggaagctt	9	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	7760773	T	T	7760773	1	4	194	0	1	0	0	0	0	0	0	0	3	116	4	5		5	A2BP1	16	7760773	3'UTR	SNP	A	TCGA-67-3771-01A-01D-1040-01	2957881	7760773	82593980	1140	156725											
ABCC1	4363	broad.mit.edu	37	chr16	16235220	16235220	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtacccctggtaaaccAagcctcccacactgaaacca	6	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	16235220	T	T	16235220	1	4	194	0	1	0	0	0	0	0	0	0	49	145	5	5		5	ABCC1	16	16235220	3'UTR	SNP	A	TCGA-67-3771-01A-01D-1040-01	8474447	16235220	74119533	1141	156726											
NOMO3	408050	broad.mit.edu	37	chr16	16364120	16364120	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atttacttcagagaacaaaaGgagtttttctgttttttttc	6	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	16364120	C	C	16364120	1	2	194	0	1	0	0	0	0	0	0	0	10628	1015	35	4		4	NOMO3	16	16364120	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	128900	16364120	73990633	1142	156727											
XYLT1	64131	broad.mit.edu	37	chr16	17232399	17232399	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaagaaggactgcaggggaGagagggacccagcctgagac	18	8	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17232399	A	A	17232399	1	1	194	0	1	0	0	0	0	0	0	0	17590	957	33	4		4	XYLT1	16	17232399	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	868279	17232399	73122354	1143	156728											
ACSM5	54988	broad.mit.edu	37	chr16	20442243	20442243	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagagttatcaggcagggtGagagaaaggcatggcccagg	16	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	20442243	A	A	20442243	1	1	194	0	1	0	0	0	0	0	0	0	187	1305	45	4		4	ACSM5	16	20442243	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3209844	20442243	69912510	1144	156729											
ITGAL	3683	broad.mit.edu	37	chr16	30509282	30509282	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccacaaaaaaataataaaTaggccggatgcaatgactca	6	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	30509282	C	C	30509282	1	2	194	0	1	0	0	0	0	0	0	0	7956	1421	49	5		5	ITGAL	16	30509282	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	10067039	30509282	59845471	1145	156730											
ITGAD	3681	broad.mit.edu	37	chr16	31422674	31422674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccgtggtgagcagggcCacccctggggccgctttggg	16	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422674	A	A	31422674	3	1	194	1	0	0	0	0	1	0	0	0	7954	594	21	2	1597	2	ITGAD	16	31422674	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	913392	31422674	58932079	1146	156731											
MYLK3	91807	broad.mit.edu	37	chr16	46763484	46763484	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggctggccacagggacCtggcccagccagatgcctca	13	15	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46763484	A	A	46763484	1	1	194	0	1	0	0	0	0	0	0	0	10152	696	24	2		2	MYLK3	16	46763484	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	15340810	46763484	43591269	1147	156732											
MMP2	4313	broad.mit.edu	37	chr16	55525623	55525623	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttactgtggggctgtcCtcaaaagtctgcatcactgg	11	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55525623	A	A	55525623	1	1	194	0	1	0	0	0	0	0	0	0	9751	696	24	2		2	MMP2	16	55525623	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	8762139	55525623	34829130	1148	156733											
MT1F	4494	broad.mit.edu	37	chr16	56692051	56692051	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcgattcccagacaccataGagagtgttcctgggtttgag	11	10	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	56692051	A	A	56692051	1	1	194	0	1	0	0	0	0	0	0	0	9994	957	33	4		4	MT1F	16	56692051	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1166428	56692051	33662702	1149	156734											
MT1G	4495	broad.mit.edu	37	chr16	56701981	56701981	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtggaaggcggagtggaGcccaacagccagcggctgtt	16	11	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	56701981	T	T	56701981	1	4	194	0	1	0	0	0	0	0	0	0	9995	986	34	3		3	MT1G	16	56701981	5'Flank	SNP	G	TCGA-67-3771-01A-01D-1040-01	9930	56701981	33652772	1150	156735											
NLRC5	84166	broad.mit.edu	37	chr16	57062312	57062312	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcaggtgagtgatctccaGgagggctcactgactgggga	16	8	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	57062312	A	A	57062312	1	1	194	0	1	0	0	0	0	0	0	0	10565	1015	35	4		4	NLRC5	16	57062312	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	360331	57062312	33292441	1151	156736											
COQ9	57017	broad.mit.edu	37	chr16	57490421	57490421	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctccccttttgtagtctctGggtctctccagtgcagcagc	9	14	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	57490421	C	C	57490421	2	2	194	1	0	0	0	0	0	0	0	1	3783	1335	47	4		4	COQ9	16	57490421	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	428109	57490421	32864332	1152	156737											
ZNF319	57567	broad.mit.edu	37	chr16	58030897	58030897	+	Frame_Shift_Del	DEL	C	-	-													agggcacttgaagggccgctCggccgcgccgggcaggcact							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	58030897	-	-	58030897	7	5	194	1	0	1	0	1	0	0	0	0	17963	893	31	0	479	0	ZNF319	16	58030897	Frame_Shift_Del	DEL	C	TCGA-67-3771-01A-01D-1040-01	540476	58030897	32323856	1153	156738											
CDH11	1009	broad.mit.edu	37	chr16	65025618	65025618	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaataggttagaggagggAgagagctggctgtgtcacca	17	5	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	65025618	G	G	65025618	1	3	194	0	1	0	0	0	0	0	0	0	3127	319	11	5		5	CDH11	16	65025618	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	6994721	65025618	25329135	1154	156739											
CES8	283848	broad.mit.edu	37	chr16	67034819	67034819	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcttcttcgtacgagggCtctgacttggccgcccgcga	13	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	67034819	G	G	67034819	2	3	194	1	0	0	0	0	0	0	0	1	3303	784	28	4		4	CES8	16	67034819	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	2009201	67034819	23319934	1155	156740											
EXOC3L	283849	broad.mit.edu	37	chr16	67218614	67218614	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcgggaaattgttgccgcaGgccagccacctccaggccca	12	15	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	67218614	C	C	67218614	3	2	194	1	0	0	0	0	1	0	0	0	5346	991	35	4	243	4	EXOC3L	16	67218614	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	183795	67218614	23136139	1156	156741											
ELMO3	79767	broad.mit.edu	37	chr16	67236949	67236949	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggcagagggcaggcagaGggcaggcagagggcggctgg	25	7	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	67236949	A	A	67236949	1	1	194	0	1	0	0	0	0	0	0	0	5109	1015	35	4		4	ELMO3	16	67236949	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	18335	67236949	23117804	1157	156742											
DPEP2	64174	broad.mit.edu	37	chr16	68024510	68024510	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaagtagctgggattacagGaatatgccatcacacccggc	10	12	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	68024510	C	C	68024510	1	2	194	0	1	0	0	0	0	0	0	0	4754	1189	41	4		4	DPEP2	16	68024510	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	787561	68024510	22330243	1158	156743											
DPEP2	64174	broad.mit.edu	37	chr16	68024933	68024934	+	Intron	DNP	GG	TT	TT													gttgggagaagggtatcaggGgtgcacatgtgtatacattt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	68024934	TT	TT	68024933	1	4	194	0	1	0	0	0	0	0	0	0	4754	1247	43	2		2	DPEP2	16	68024933	Intron	DNP	GG	TCGA-67-3771-01A-01D-1040-01	423	68024933	22329820	1159	156744											
PLA2G15	23659	broad.mit.edu	37	chr16	68289811	68289811	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagcggcagccgcaggcctgGaaggacaagtatatccgggc	15	12	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	68289811	A	A	68289811	4	1	194	1	0	0	0	0	0	1	0	0	12087	1183	41	4	663	4	PLA2G15	16	68289811	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	264878	68289811	22064942	1160	156745											
TMCO7	79613	broad.mit.edu	37	chr16	68941453	68941453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaggaatgcggtttggcagGagacttcttcatcttctgtt	11	9	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	68941453	T	T	68941453	3	4	194	1	0	0	0	0	1	0	0	0	16124	1174	41	3	1813	3	TMCO7	16	68941453	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	651642	68941453	21413300	1161	156746											
CALB2	794	broad.mit.edu	37	chr16	71416736	71416736	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcggtgggcttaaggtgcctGaggagggaggagatgttgga	21	4	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71416736	A	A	71416736	1	1	194	0	1	0	0	0	0	0	0	0	2600	1305	45	4		4	CALB2	16	71416736	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2475283	71416736	18938017	1162	156747											
DHX38	9785	broad.mit.edu	37	chr16	72140089	72140089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggagcccgggcgggggcgGgcaggatgctggctctagag	22	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	72140089	T	T	72140089	1	4	194	0	1	0	0	0	0	0	0	0	4551	1247	43	2		2	DHX38	16	72140089	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	723353	72140089	18214664	1163	156748											
WDR59	79726	broad.mit.edu	37	chr16	74982504	74982504	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaatttatatgccaccaccCacctggtatttttcaccctt	3	15	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	74982504	G	G	74982504	1	3	194	0	1	0	0	0	0	0	0	0	17435	609	21	4		4	WDR59	16	74982504	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2842415	74982504	15372249	1164	156749											
VAT1L	57687	broad.mit.edu	37	chr16	78005902	78005902	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaatcagatgcagacacGggtggggtagaaggaagtac	16	6	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	78005902	T	T	78005902	1	4	194	0	1	0	0	0	0	0	0	0	17257	1131	39	1		1	VAT1L	16	78005902	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3023398	78005902	12348851	1165	156750											
MAF	4094	broad.mit.edu	37	chr16	79633806	79633808	+	5'UTR	DEL	GCC	-	-													agttctgatgccattctcctGccgccgccgccgccgccgcc					rs5818251		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	79633808	-	-	79633806	6	5	194	0	1	1	0	1	0	0	0	0	9243	1334	46	0		0	MAF	16	79633806	5'UTR	DEL	GCC	TCGA-67-3771-01A-01D-1040-01	1627904	79633806	10720947	1166	156751											
PLCG2	5336	broad.mit.edu	37	chr16	81944011	81944011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcctcctgtgtctgttctAggagcagagggaaggttgtg	15	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	81944011	T	T	81944011	1	4	194	0	1	0	0	0	0	0	0	0	12131	435	15	5		5	PLCG2	16	81944011	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	2310205	81944011	8410742	1167	156752											
SLC38A8	146167	broad.mit.edu	37	chr16	84050323	84050323	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctccagaagtcctgCatcactgacctggaggccac	8	17	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	84050323	T	T	84050323	3	4	194	1	0	0	0	0	1	0	0	0	14724	710	25	4	356	4	SLC38A8	16	84050323	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2106312	84050323	6304430	1168	156753											
WFDC1	58189	broad.mit.edu	37	chr16	84360462	84360462	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggaatagatacatctaccCcaacagagctgtgttctttt	7	10	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	84360462	G	G	84360462	1	3	194	0	1	0	0	0	0	0	0	0	17473	638	22	4		4	WFDC1	16	84360462	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	310139	84360462	5994291	1169	156754											
RPL13	6137	broad.mit.edu	37	chr16	89627941	89627941	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatccaggcctcggggctgGagaaagcccgggcctgtctc	14	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	89627941	C	C	89627941	1	2	194	0	1	0	0	0	0	0	0	0	13670	1189	41	4		4	RPL13	16	89627941	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	5267479	89627941	726812	1170	156755											
C16orf7	9605	broad.mit.edu	37	chr16	89777626	89777626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcagtgtccacgtggcCgggcacaggctccctgtgtc	14	14	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	89777626	A	A	89777626	1	1	194	0	1	0	0	0	0	0	0	0	1842	667	23	1		1	C16orf7	16	89777626	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	149685	89777626	577127	1171	156756											
ITGAE	3682	broad.mit.edu	37	chr17	3651249	3651249	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtggttacagagctgatttCaaaacataaacggacattca	8	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	3651249	G	G	3651249	3	3	194	1	0	0	0	0	1	0	0	0	7955	835	29	4	1477	4	ITGAE	17	3651249	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01		3651249	77543961	1172	156757											
CAMKK1	84254	broad.mit.edu	37	chr17	3786361	3786361	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtttgaccacattcacgTggtccagcttcttcaggatg	9	11	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	3786361	A	A	3786361	3	1	194	1	0	0	0	0	1	0	0	0	2632	1696	59	5	1060	5	CAMKK1	17	3786361	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	135112	3786361	77408849	1173	156758											
UBE2G1	7326	broad.mit.edu	37	chr17	4186205	4186205	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattctccatttctatcttcCctccattctttctgtagatt	2	12	5	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	4186205	T	T	4186205	2	4	194	1	0	0	0	0	0	0	0	1	16982	622	22	4		4	UBE2G1	17	4186205	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	399844	4186205	77009005	1174	156759											
MYBBP1A	10514	broad.mit.edu	37	chr17	4442216	4442216	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgcctcctcttccttcCggaagccaaactgctccttt	7	15	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	4442216	T	T	4442216	1	4	194	0	1	0	0	0	0	0	0	0	10102	667	23	4		4	MYBBP1A	17	4442216	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	256011	4442216	76752994	1175	156760											
ZNF232	7775	broad.mit.edu	37	chr17	5012590	5012590	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactgctctacctggcccaaGagaggtttgaacttggcacc	10	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	5012590	A	A	5012590	1	1	194	0	1	0	0	0	0	0	0	0	17911	957	33	4		4	ZNF232	17	5012590	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	570374	5012590	76182620	1176	156761											
SLC13A5	284111	broad.mit.edu	37	chr17	6606404	6606404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttacacaacctcttccGctcttggtcttcctgctgcc	7	17	3	0	rs142320179		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6606404	T	T	6606404	2	4	194	1	0	0	0	0	0	0	0	1	14508	1086	38	3		3	SLC13A5	17	6606404	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	1593814	6606404	74588806	1177	156762											
TEKT1	83659	broad.mit.edu	37	chr17	6716031	6716031	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatgaatgacccttacccacGagttaacccaatatcccaag	5	13	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	6716031	A	A	6716031	1	1	194	0	1	0	0	0	0	0	0	0	15874	1073	37	4		4	TEKT1	17	6716031	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	109627	6716031	74479179	1178	156763											
DVL2	1856	broad.mit.edu	37	chr17	7133927	7133927	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgccggctctccaaacagaCaggaggtaaagagccagggc	13	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	7133927	G	G	7133927	1	3	194	0	1	0	0	0	0	0	0	0	4876	493	17	4		4	DVL2	17	7133927	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	417896	7133927	74061283	1179	156764											
TP53	7157	broad.mit.edu	37	chr17	7578550	7578550	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acatcttgttgagggcagggGagtactgtaggaagaggaag	17	4	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578550	C	C	7578550	3	2	194	1	0	0	0	0	1	0	0	0	16505	1174	41	4	918	4	TP53	17	7578550	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	444623	7578550	73616660	1180	156765											
DNAH2	146754	broad.mit.edu	37	chr17	7661802	7661802	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctctggataccaggcctctCttatgcacaggattattgcc	8	13	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	7661802	G	G	7661802	1	3	194	0	1	0	0	0	0	0	0	0	4642	928	32	4		4	DNAH2	17	7661802	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	83252	7661802	73533408	1181	156766											
CCDC42	146849	broad.mit.edu	37	chr17	8644550	8644550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagacacaccactaggccCcaccccttgagaaactcatc	5	17	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	8644550	A	A	8644550	1	1	194	0	1	0	0	0	0	0	0	0	2841	638	22	2		2	CCDC42	17	8644550	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	982748	8644550	72550660	1182	156767											
NTN1	9423	broad.mit.edu	37	chr17	9124658	9124658	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcccccgatgggtgttggtCgtgaagaccctgtgaccgat	15	11	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	9124658	G	G	9124658	1	3	194	0	1	0	0	0	0	0	0	0	10795	899	31	4		4	NTN1	17	9124658	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	480108	9124658	72070552	1183	156768											
MYH4	4622	broad.mit.edu	37	chr17	10367852	10367852	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaactgcaattgttgcaaaGtactggatgacacgcttcgt	10	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10367852	T	T	10367852	4	4	194	1	0	0	0	0	0	1	0	0	10131	1024	36	3	5370	3	MYH4	17	10367852	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1243194	10367852	70827358	1184	156769											
DNAH9	1770	broad.mit.edu	37	chr17	11584254	11584254	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtgaacactgcagtctTtgagtcatggataatctttt	8	7	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	11584254	C	C	11584254	1	2	194	0	1	0	0	0	0	0	0	0	4648	1856	64	5		5	DNAH9	17	11584254	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1216402	11584254	69610956	1185	156770											
MAP2K4	6416	broad.mit.edu	37	chr17	12028689	12028689	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtttggggatcacattgGtatgtttatgctgattcaac	12	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	12028689	C	C	12028689	5	2	194	1	0	0	0	0	0	0	1	0	9331	1275	44	4	922	4	MAP2K4	17	12028689	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	444435	12028689	69166521	1186	156771											
ZNF286A	57335	broad.mit.edu	37	chr17	15607770	15607770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatctctgtgagcagacGggcccgagccgcatactcct	13	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	15607770	T	T	15607770	1	4	194	0	1	0	0	0	0	0	0	0	17949	1131	39	1		1	ZNF286A	17	15607770	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3579081	15607770	65587440	1187	156772											
MPRIP	23164	broad.mit.edu	37	chr17	17039274	17039274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaggagctacagatgatGctggacctgtctcgagggtg	15	7	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	17039274	T	T	17039274	1	4	194	0	1	0	0	0	0	0	0	0	9837	1334	46	3		3	MPRIP	17	17039274	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1431504	17039274	64155936	1188	156773											
RAI1	10743	broad.mit.edu	37	chr17	17699745	17699745	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcttccactccaagcggcgGaggccctctgagggccggct	13	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17699745	A	A	17699745	2	1	194	1	0	0	0	0	0	0	0	1	13115	1161	41	4		4	RAI1	17	17699745	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	660471	17699745	63495465	1189	156774											
EVPLL	645027	broad.mit.edu	37	chr17	18284947	18284947	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacgagcgggtgacccaGgagtgtgcggagtactgtgc	17	10	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18284947	A	A	18284947	2	1	194	1	0	0	0	0	0	0	0	1	5335	991	35	4		4	EVPLL	17	18284947	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	585202	18284947	62910263	1190	156775											
LGALS9C	654346	broad.mit.edu	37	chr17	18387103	18387103	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctcgcatggtgcggtcaCacccaggccagccactgact	10	18	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	18387103	G	G	18387103	1	3	194	0	1	0	0	0	0	0	0	0	8822	493	17	4		4	LGALS9C	17	18387103	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	102156	18387103	62808107	1191	156776											
MAPK7	5598	broad.mit.edu	37	chr17	19282274	19282274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcggagccccccgggcccGtgaaggccgaacccgcccac	13	20	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	19282274	T	T	19282274	3	4	194	1	0	0	0	0	1	0	0	0	9374	1145	40	3	63	3	MAPK7	17	19282274	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	895171	19282274	61912936	1192	156777											
NOS2	4843	broad.mit.edu	37	chr17	26094815	26094815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggaggtgtagagcttggGgatctgaatgtgctgtttgc	16	4	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26094815	T	T	26094815	3	4	194	1	0	0	0	0	1	0	0	0	10638	1232	43	2	1418	2	NOS2	17	26094815	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6812541	26094815	55100395	1193	156778											
SPAG5	10615	broad.mit.edu	37	chr17	26919437	26919437	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctcatttctctttcctcCatagctccatgctctacaat	2	15	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26919437	T	T	26919437	3	4	194	1	0	0	0	0	1	0	0	0	15097	594	21	4	2844	4	SPAG5	17	26919437	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	824622	26919437	54275773	1194	156779											
SGK494	124923	broad.mit.edu	37	chr17	26939458	26939458	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagctgcaatgcctgggctCaaggcattgtaggcctcctg	14	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	26939458	G	G	26939458	1	3	194	0	1	0	0	0	0	0	0	0	14326	841	29	4		4	SGK494	17	26939458	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	20021	26939458	54255752	1195	156780											
SPACA3	124912	broad.mit.edu	37	chr17	31324729	31324729	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctgttctccatcctcaGggaggcctggaggcatcact	10	14	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31324729	T	T	31324729	5	4	194	1	0	0	0	0	0	0	1	0	15087	1014	35	2	599	2	SPACA3	17	31324729	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	4385271	31324729	49870481	1196	156781											
ACCN1	40	broad.mit.edu	37	chr17	31341136	31341136	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcgctcagcaaaaattcttCatgatgccaccagcggccca	7	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31341136	T	T	31341136	1	4	194	0	1	0	0	0	0	0	0	0	128	841	29	4		4	ACCN1	17	31341136	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	16407	31341136	49854074	1197	156782											
RDM1	201299	broad.mit.edu	37	chr17	34256919	34256919	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acaagtcgctcaaccaccttGagtttgagtttcttcatgta	7	10	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	34256919	C	C	34256919	1	2	194	0	1	0	0	0	0	0	0	0	13305	1305	45	4		4	RDM1	17	34256919	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2915783	34256919	46938291	1198	156783											
CCL23	6368	broad.mit.edu	37	chr17	34341012	34341012	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccgtgaccagcacttGctggcatctccctgcttcag	8	17	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	34341012	T	T	34341012	1	4	194	0	1	0	0	0	0	0	0	0	2923	1334	46	3		3	CCL23	17	34341012	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	84093	34341012	46854198	1199	156784											
MRPL45	84311	broad.mit.edu	37	chr17	36453205	36453205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgaggtttttgggctggtGgtttcggcaggtgggtaggg	20	4	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	36453205	T	T	36453205	3	4	194	1	0	0	0	0	1	0	0	0	9903	1357	47	2		2	MRPL45	17	36453205	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2112193	36453205	44742005	1200	156785											
MLLT6	4302	broad.mit.edu	37	chr17	36865410	36865410	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggaggaggggacgattGcgctgtgtcctgcagacctg	16	11	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	36865410	A	A	36865410	1	1	194	0	1	0	0	0	0	0	0	0	9723	1334	46	4		4	MLLT6	17	36865410	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	412205	36865410	44329800	1201	156786											
MLLT6	4302	broad.mit.edu	37	chr17	36871817	36871817	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcccacatcaggatcagcAcaggcccaggcacctggtgt	10	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	36871817	G	G	36871817	1	3	194	0	1	0	0	0	0	0	0	0	9723	174	6	5		5	MLLT6	17	36871817	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	6407	36871817	44323393	1202	156787											
STARD3	10948	broad.mit.edu	37	chr17	37815439	37815439	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggggtcagccggggtgGgcaggggtttcccagtagag	20	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37815439	T	T	37815439	1	4	194	0	1	0	0	0	0	0	0	0	15375	1247	43	2		2	STARD3	17	37815439	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	943622	37815439	43379771	1203	156788											
ERBB2	2064	broad.mit.edu	37	chr17	37871871	37871871	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctttgggcctgagggagtActcctgtagcagtaaccttt	12	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37871871	T	T	37871871	1	4	194	0	1	0	0	0	0	0	0	0	5248	406	14	5		5	ERBB2	17	37871871	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	56432	37871871	43323339	1204	156789											
KRT23	25984	broad.mit.edu	37	chr17	39092742	39092742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagatgcgggctcccccCgcaccgccatggacggtggg	17	14	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39092742	A	A	39092742	2	1	194	1	0	0	0	0	0	0	0	1	8531	639	23	1		1	KRT23	17	39092742	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1220871	39092742	42102468	1205	156790											
KRTAP9-4	85280	broad.mit.edu	37	chr17	39406231	39406231	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccagcccacctgctgtGggtccagctgtgaccagagc	13	15	0	2	rs142016041	byFrequency	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39406231	A	A	39406231	3	1	194	1	0	0	0	0	1	0	0	0	8647	1348	47	4	261	4	KRTAP9-4	17	39406231	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	313489	39406231	41788979	1206	156791											
TTC25	83538	broad.mit.edu	37	chr17	40095333	40095333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaactggttggaaacttGtatagctgcatagggaatgc	13	5	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	40095333	T	T	40095333	3	4	194	1	0	0	0	0	1	0	0	0	16819	1368	48	3	992	3	TTC25	17	40095333	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	689102	40095333	41099877	1207	156792											
RAB5C	5878	broad.mit.edu	37	chr17	40280324	40280324	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggtctgccttgttaccCgcgagtgcaatgacgatgtt	12	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	40280324	A	A	40280324	2	1	194	1	0	0	0	0	0	0	0	1	13058	639	23	1		1	RAB5C	17	40280324	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	184991	40280324	40914886	1208	156793											
GHDC	84514	broad.mit.edu	37	chr17	40344578	40344578	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gccctcagccctggggacctCagtgcgtccagcagcagggc	14	16	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	40344578	T	T	40344578	2	4	194	1	0	0	0	0	0	0	0	1	6433	813	29	4		4	GHDC	17	40344578	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	64254	40344578	40850632	1209	156794											
CNTD1	124817	broad.mit.edu	37	chr17	40959981	40959981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggacaacctacagaagtGccaagacccaggattaggat	11	9	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	40959981	T	T	40959981	1	4	194	0	1	0	0	0	0	0	0	0	3667	1334	46	3		3	CNTD1	17	40959981	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	615403	40959981	40235229	1210	156795											
SLC4A1	6521	broad.mit.edu	37	chr17	42337006	42337006	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtctgacctgggagacctGagcatcctccccttcccatt	8	16	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	42337006	C	C	42337006	1	2	194	0	1	0	0	0	0	0	0	0	14764	1305	45	4		4	SLC4A1	17	42337006	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1377025	42337006	38858204	1211	156796											
GPATCH8	23131	broad.mit.edu	37	chr17	42478467	42478467	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgttccatcttcagaggtCccttcctccgcatggtcctt	7	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	42478467	T	T	42478467	2	4	194	1	0	0	0	0	0	0	0	1	6659	842	30	4		4	GPATCH8	17	42478467	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	141461	42478467	38716743	1212	156797											
CRHR1	1394	broad.mit.edu	37	chr17	43911514	43911514	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccctcccagggctgcctctCtccctccctgctcctaggtc	7	22	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	43911514	A	A	43911514	1	1	194	0	1	0	0	0	0	0	0	0	3903	928	32	3		3	CRHR1	17	43911514	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1433047	43911514	37283696	1213	156798											
STH	246744	broad.mit.edu	37	chr17	44077047	44077047	+	3'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgtagaaaggggcagatggGagccccaggttatgacgtca	16	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	44077047	C	C	44077047	1	2	194	0	1	0	0	0	0	0	0	0	15399	1189	41	4		4	STH	17	44077047	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	165533	44077047	37118163	1214	156799											
TBX21	30009	broad.mit.edu	37	chr17	45822468	45822468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgggcccggccagctggttCcgccctatgcggactctgcc	13	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	45822468	A	A	45822468	3	1	194	1	0	0	0	0	1	0	0	0	15779	854	30	3	1366	3	TBX21	17	45822468	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1745421	45822468	35372742	1215	156800											
SP2	6668	broad.mit.edu	37	chr17	46002953	46002953	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccacccacagaggtcaaattCctgcctctcctcccaccccc	4	22	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	46002953	G	G	46002953	1	3	194	0	1	0	0	0	0	0	0	0	15078	870	30	4		4	SP2	17	46002953	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	180485	46002953	35192257	1216	156801											
SP2	6668	broad.mit.edu	37	chr17	46002977	46002977	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctctcctcccacccccactCtaccggctttagcaacattg	4	20	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	46002977	G	G	46002977	1	3	194	0	1	0	0	0	0	0	0	0	15078	928	32	4		4	SP2	17	46002977	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	24	46002977	35192233	1217	156802											
TTLL6	284076	broad.mit.edu	37	chr17	46863507	46863507	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggtgtggctacgtgtgttCccctcaatccaggtttacct	11	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46863507	A	A	46863507	1	1	194	0	1	0	0	0	0	0	0	0	16857	870	30	3		3	TTLL6	17	46863507	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	860530	46863507	34331703	1218	156803											
IGF2BP1	10642	broad.mit.edu	37	chr17	47121244	47121244	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtgcctgtactccttcctCcttgaggatgcaaggcaggg	13	11	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	47121244	T	T	47121244	1	4	194	0	1	0	0	0	0	0	0	0	7643	870	30	4		4	IGF2BP1	17	47121244	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	257737	47121244	34073966	1219	156804											
ABCC3	8714	broad.mit.edu	37	chr17	48761448	48761448	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctccatgacctgcgctctCagctgaccatcatcccgcag	8	18	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	48761448	G	G	48761448	3	3	194	1	0	0	0	0	1	0	0	0	54	827	29	4	4287	4	ABCC3	17	48761448	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1640204	48761448	32433762	1220	156805											
TEX14	56155	broad.mit.edu	37	chr17	56679958	56679958	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagggtatgtcatctgtaaGgaaaaagtcatacaaaagag	10	6	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	56679958	C	C	56679958	1	2	194	0	1	0	0	0	0	0	0	0	15900	1015	35	4		4	TEX14	17	56679958	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	7918510	56679958	24515252	1221	156806											
TUBD1	51174	broad.mit.edu	37	chr17	57958297	57958297	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataatctgattcattttcaaTgagtttgagtactgatcttc	6	6	4	4	rs142691296		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	57958297	G	G	57958297	2	3	194	1	0	0	0	0	0	0	0	1	16888	1451	51	5		5	TUBD1	17	57958297	Silent	SNP	T	TCGA-67-3771-01A-01D-1040-01	1278339	57958297	23236913	1222	156807											
HEATR6	63897	broad.mit.edu	37	chr17	58147969	58147969	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatatgtaagaactttTaatacctcaaagttagcctt	4	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	58147969	A	A	58147969	1	1	194	0	1	0	0	0	0	0	0	0	7100	1769	61	5		5	HEATR6	17	58147969	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	189672	58147969	23047241	1223	156808											
BCAS3	54828	broad.mit.edu	37	chr17	58786579	58786579	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttacttaattctaatgcaGatacatcaagaaatctggaa	6	6	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	58786579	A	A	58786579	5	1	194	1	0	0	0	0	0	0	1	0	1357	956	33	4	228	4	BCAS3	17	58786579	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	638610	58786579	22408631	1224	156809											
BCAS3	54828	broad.mit.edu	37	chr17	59465990	59465990	+	Intron	SNP	G	A	A													tttcaaaagggaaaaaaaaaGgaaaaaaaaaacaatgccaa							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	59465990	A	A	59465990	1	1	194	0	1	0	0	0	0	0	0	0	1357	1015	35	4		4	BCAS3	17	59465990	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	679411	59465990	21729220	1225	156810	668	2									
BCAS3	54828	broad.mit.edu	37	chr17	59465992	59465992	+	Intron	SNP	A	G	G													tcaaaagggaaaaaaaaaggAaaaaaaaaacaatgccaaca							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	59465992	G	G	59465992	1	3	194	0	1	0	0	0	0	0	0	0	1357	261	9	5		5	BCAS3	17	59465992	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	2	59465992	21729218	1226	156811	668	2									
FTSJ3	117246	broad.mit.edu	37	chr17	61897138	61897138	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcctcctagtccccatgctCtcctgggagcctggcagctc	9	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	61897138	G	G	61897138	1	3	194	0	1	0	0	0	0	0	0	0	6149	928	32	4		4	FTSJ3	17	61897138	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	2431146	61897138	19298072	1227	156812											
SDK2	54549	broad.mit.edu	37	chr17	71410752	71410752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagaagatcttagggcCtcctcttgggtgaggagatg	13	10	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	71410752	A	A	71410752	1	1	194	0	1	0	0	0	0	0	0	0	14082	696	24	2		2	SDK2	17	71410752	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	9513614	71410752	9784458	1228	156813											
SDK2	54549	broad.mit.edu	37	chr17	71427710	71427711	+	Missense_Mutation	DNP	CC	AT	AT													ggccaggcaggtgtaggtccCcgcatcggagatgtgtgtgg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	71427711	AT	AT	71427710	3	1	194	1	0	0	0	0	1	0	0	0	14082	623	22	2	5247	2	SDK2	17	71427710	Missense_Mutation	DNP	CC	TCGA-67-3771-01A-01D-1040-01	16958	71427710	9767500	1229	156814											
LLGL2	3993	broad.mit.edu	37	chr17	73567113	73567113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcgcaagatcgaggctcGctcggcagaggactccttca	13	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	73567113	T	T	73567113	3	4	194	1	0	0	0	0	1	0	0	0	8908	1087	38	3	2205	3	LLGL2	17	73567113	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2139403	73567113	7628097	1230	156815											
ITGB4	3691	broad.mit.edu	37	chr17	73738595	73738595	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggcgggtccgctgtgccActgcctcgcacctcccgcct	13	18	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	73738595	G	G	73738595	1	3	194	0	1	0	0	0	0	0	0	0	7967	174	6	5		5	ITGB4	17	73738595	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	171482	73738595	7456615	1231	156816											
EXOC7	23265	broad.mit.edu	37	chr17	74094015	74094015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcagatccaagatgagcaCgggcgagacgaccttactgt	12	10	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74094015	A	A	74094015	3	1	194	1	0	0	0	0	1	0	0	0	5352	536	19	3	1769	3	EXOC7	17	74094015	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	355420	74094015	7101195	1232	156817											
QRICH2	84074	broad.mit.edu	37	chr17	74303406	74303406	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctatttagccagtcgcactGaggtctggcacctcctcggt	10	13	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	74303406	A	A	74303406	1	1	194	0	1	0	0	0	0	0	0	0	12988	1305	45	4		4	QRICH2	17	74303406	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	209391	74303406	6891804	1233	156818											
ENGASE	64772	broad.mit.edu	37	chr17	77076939	77076939	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccccctgtctgtccagcGctggatacttctcatgatag	8	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77076939	A	A	77076939	1	1	194	0	1	0	0	0	0	0	0	0	5160	1102	38	4		4	ENGASE	17	77076939	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2773533	77076939	4118271	1234	156819											
TBC1D16	125058	broad.mit.edu	37	chr17	77987324	77987324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttggaggaggccctgCgaaggaggcggcccagagac	18	10	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	77987324	A	A	77987324	3	1	194	1	0	0	0	0	1	0	0	0	15724	768	27	3	2324	3	TBC1D16	17	77987324	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	910385	77987324	3207886	1235	156820											
NPTX1	4884	broad.mit.edu	37	chr17	78447417	78447417	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtactttgccccaaggcacaGggccagtctgtaaagagctg	12	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	78447417	C	C	78447417	1	2	194	0	1	0	0	0	0	0	0	0	10697	1015	35	4		4	NPTX1	17	78447417	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	460093	78447417	2747793	1236	156821											
SLC38A10	124565	broad.mit.edu	37	chr17	79234101	79234101	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagccggccgccaggggCttcctctgccaagtcctcgg	12	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	79234101	T	T	79234101	3	4	194	1	0	0	0	0	1	0	0	0	14716	797	28	4	2436	4	SLC38A10	17	79234101	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	786684	79234101	1961109	1237	156822											
GPS1	2873	broad.mit.edu	37	chr17	80010094	80010094	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcagctcacgggagaggttCccggccgccccgacgctaac	13	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	80010094	T	T	80010094	1	4	194	0	1	0	0	0	0	0	0	0	6798	870	30	4		4	GPS1	17	80010094	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	775993	80010094	1185116	1238	156823											
LRRC30	339291	broad.mit.edu	37	chr18	7231811	7231811	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaacatccactccttcccGaggtcgctttgcctggtcac	7	16	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	7231811	T	T	7231811	2	4	194	1	0	0	0	0	0	0	0	1	9072	1045	37	3		3	LRRC30	18	7231811	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01		7231811	70845437	1239	156824											
PTPRM	5797	broad.mit.edu	37	chr18	8143827	8143827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatatcccattgtttgctGgaatgttttgtgtgtgtgaa	11	4	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	8143827	T	T	8143827	1	4	194	0	1	0	0	0	0	0	0	0	12914	1363	47	2		2	PTPRM	18	8143827	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	912016	8143827	69933421	1240	156825											
ANKRD30B	374860	broad.mit.edu	37	chr18	14763799	14763799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctgcacgcttggtggaggGaacgtctgccaaaattcaat	13	9	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	14763799	T	T	14763799	3	4	194	1	0	0	0	0	1	0	0	0	659	1174	41	3	961	3	ANKRD30B	18	14763799	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	6619972	14763799	63313449	1241	156826											
ROCK1	6093	broad.mit.edu	37	chr18	18550453	18550453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttttgtttctgctagatcCaactgagtagcaagagtttc	9	8	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18550453	A	A	18550453	3	1	194	1	0	0	0	0	1	0	0	0	13628	593	21	2	1432	2	ROCK1	18	18550453	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3786654	18550453	59526795	1242	156827											
ANKRD29	147463	broad.mit.edu	37	chr18	21214028	21214028	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcacataaagttggtcaTggatgtttgctccgtgcttc	9	10	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	21214028	C	C	21214028	3	2	194	1	0	0	0	0	1	0	0	0	657	1464	51	5	513	5	ANKRD29	18	21214028	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	2663575	21214028	56863220	1243	156828											
HRH4	59340	broad.mit.edu	37	chr18	22040786	22040786	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcttttgctataatgctaGgaaatgctttggtcatttta	8	5	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	22040786	T	T	22040786	4	4	194	1	0	0	0	0	0	1	0	0	7425	1001	35	2	96	2	HRH4	18	22040786	Nonsense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	826758	22040786	56036462	1244	156829											
ZNF521	25925	broad.mit.edu	37	chr18	22807148	22807148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactgactgcacttctgaGtgtccttcatcttccagtcc	6	15	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	22807148	T	T	22807148	3	4	194	1	0	0	0	0	1	0	0	0	18092	1029	36	3	3221	3	ZNF521	18	22807148	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	766362	22807148	55270100	1245	156830											
CDH2	1000	broad.mit.edu	37	chr18	25585688	25585688	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccttctttcccaaaagCattatgaatgaaagaaaagg	6	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	25585688	A	A	25585688	1	1	194	0	1	0	0	0	0	0	0	0	3135	725	25	3		3	CDH2	18	25585688	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2778540	25585688	52491560	1246	156831											
CDH2	1000	broad.mit.edu	37	chr18	25589787	25589787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctggtcagctcctggcCcagttacactgtaccgcagt	12	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	25589787	A	A	25589787	3	1	194	1	0	0	0	0	1	0	0	0	3135	623	22	2	2172	2	CDH2	18	25589787	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	4099	25589787	52487461	1247	156832											
DSC3	1825	broad.mit.edu	37	chr18	28574373	28574373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgaattgcattataGttttaaacaacttaaatata	3	3	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	28574373	T	T	28574373	1	4	194	0	1	0	0	0	0	0	0	0	4807	1044	36	3		3	DSC3	18	28574373	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2984586	28574373	49502875	1248	156833											
DSG4	147409	broad.mit.edu	37	chr18	28993526	28993526	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcgacacagagtaacaCgatacagtaacatacattac	5	11	1	1	rs147705128	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	28993526	A	A	28993526	2	1	194	1	0	0	0	0	0	0	0	1	4819	528	19	3		3	DSG4	18	28993526	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	419153	28993526	49083722	1249	156834											
ZNF24	7572	broad.mit.edu	37	chr18	32919719	32919719	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatgatccccccaccagtgaGaacaagcaaagttctgaaca	7	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	32919719	A	A	32919719	1	1	194	0	1	0	0	0	0	0	0	0	17918	957	33	4		4	ZNF24	18	32919719	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3926193	32919719	45157529	1250	156835											
ELP2	55250	broad.mit.edu	37	chr18	33734940	33734940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactagactttttgctccatGgaagagaaaagaccaatcac	7	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	33734940	T	T	33734940	3	4	194	1	0	0	0	0	1	0	0	0	5122	1357	47	2	1299	2	ELP2	18	33734940	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	815221	33734940	44342308	1251	156836											
CELF4	56853	broad.mit.edu	37	chr18	34833913	34833913	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacgaagcctggcgagacaCgagggacgagggcctgggtt	17	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	34833913	G	G	34833913	1	3	194	0	1	0	0	0	0	0	0	0	3248	551	19	4		4	CELF4	18	34833913	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1098973	34833913	43243335	1252	156837											
SETBP1	26040	broad.mit.edu	37	chr18	42530068	42530068	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagcaagatccccgctcttGagcccgtggcttcctttgca	9	16	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	42530068	C	C	42530068	3	2	194	1	0	0	0	0	1	0	0	0	14242	1291	45	4	966	4	SETBP1	18	42530068	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	7696155	42530068	35547180	1253	156838											
SLC14A2	8170	broad.mit.edu	37	chr18	43223121	43223121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctgtgcatacatggaagCagccatctccaacatcatgt	8	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	43223121	T	T	43223121	3	4	194	1	0	0	0	0	1	0	0	0	14510	710	25	4	1181	4	SLC14A2	18	43223121	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	693053	43223121	34854127	1254	156839											
SLC14A1	6563	broad.mit.edu	37	chr18	43311195	43311195	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtaccctttcaagccttctCagctcccttctgagacacag	6	15	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	43311195	G	G	43311195	1	3	194	0	1	0	0	0	0	0	0	0	14509	841	29	4		4	SLC14A1	18	43311195	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	88074	43311195	34766053	1255	156840											
WDR7	23335	broad.mit.edu	37	chr18	54358470	54358471	+	Frame_Shift_Ins	INS	-	T	T													tcgatgccggagactattccINSttgttgtgttcaggtcctag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	54358471	T	T	54358470	7	5	194	1	0	1	1	0	0	0	0	0	17447	668	24	0	767	0	WDR7	18	54358470	Frame_Shift_Ins	INS	-	TCGA-67-3771-01A-01D-1040-01	11047275	54358470	23718778	1256	156841											
ST8SIA3	51046	broad.mit.edu	37	chr18	55024197	55024197	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatttttctttgaccaagaAtagtgttcggattggacaac	8	6	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	55024197	G	G	55024197	3	3	194	1	0	0	0	0	1	0	0	0	15351	101	4	5	366	5	ST8SIA3	18	55024197	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	665727	55024197	23053051	1257	156842											
SERPINB4	6318	broad.mit.edu	37	chr18	61305166	61305166	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagatactgagagaccgtgGctccaggtcatgcctgagag	13	9	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61305166	A	A	61305166	2	1	194	1	0	0	0	0	0	0	0	1	14216	1194	42	4		4	SERPINB4	18	61305166	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	6280969	61305166	16772082	1258	156843											
SERPINB7	8710	broad.mit.edu	37	chr18	61465989	61465989	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatctcccaaggtatgtcgTcaatctcctatttaatttag	5	9	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61465989	A	A	61465989	1	1	194	0	1	0	0	0	0	0	0	0	14219	1682	58	5		5	SERPINB7	18	61465989	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	160823	61465989	16611259	1259	156844											
CDH7	1005	broad.mit.edu	37	chr18	63547767	63547767	+	Frame_Shift_Del	DEL	G	-	-													ggagaggaggacacggaagcGtttgacatggctgcactgag					rs150661165		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	63547767	-	-	63547767	7	5	194	1	0	1	0	1	0	0	0	0	3145	1132	40	0	2037	0	CDH7	18	63547767	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	2081778	63547767	14529481	1260	156845											
CDC34	997	broad.mit.edu	37	chr19	536054	536054	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcctccgggacccggggcGctgggagcctcacgtcctcg	15	17	1	0	rs147136672	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	536054	A	A	536054	1	1	194	0	1	0	0	0	0	0	0	0	3097	1102	38	4		4	CDC34	19	536054	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01		536054	58592929	1261	156846											
BSG	682	broad.mit.edu	37	chr19	582443	582443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgggggtcctgggggccgGggtgggcaggggtgacttgg	24	7	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	582443	T	T	582443	1	4	194	0	1	0	0	0	0	0	0	0	1538	1247	43	2		2	BSG	19	582443	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	46389	582443	58546540	1262	156847											
NDUFS7	374291	broad.mit.edu	37	chr19	1391229	1391229	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctggcctggccgtgccctGatggcgcttatcaaaagtgt	13	11	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	1391229	C	C	1391229	1	2	194	0	1	0	0	0	0	0	0	0	10392	1305	45	4		4	NDUFS7	19	1391229	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	808786	1391229	57737754	1263	156848											
PCSK4	54760	broad.mit.edu	37	chr19	1483437	1483437	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggccgatacgttttcccTgatgtagatcagcggcagga	13	10	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	1483437	C	C	1483437	3	2	194	1	0	0	0	0	1	0	0	0	11696	1579	55	5	866	5	PCSK4	19	1483437	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	92208	1483437	57645546	1264	156849											
PCSK4	54760	broad.mit.edu	37	chr19	1483627	1483627	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacccccagcggggatagcgGaggggcgcgcaggggtctca	18	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	1483627	C	C	1483627	1	2	194	0	1	0	0	0	0	0	0	0	11696	1189	41	4		4	PCSK4	19	1483627	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	190	1483627	57645356	1265	156850											
ZNF554	115196	broad.mit.edu	37	chr19	2832300	2832300	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatactcttgtctttttcaGaagccttgaagaaccaatgt	7	8	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	2832300	A	A	2832300	5	1	194	1	0	0	0	0	0	0	1	0	18112	956	33	4	267	4	ZNF554	19	2832300	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	1348673	2832300	56296683	1266	156851											
GNA11	2767	broad.mit.edu	37	chr19	3118848	3118848	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggcaggaggggcttgggTgggagccgtcctgggattgc	21	7	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	3118848	G	G	3118848	1	3	194	0	1	0	0	0	0	0	0	0	6563	1711	59	5		5	GNA11	19	3118848	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	286548	3118848	56010135	1267	156852											
CREB3L3	84699	broad.mit.edu	37	chr19	4170211	4170211	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagaagcaaaacctgtgagTctgggtccagctggggcaga	15	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	4170211	A	A	4170211	1	1	194	0	1	0	0	0	0	0	0	0	3890	1682	58	5		5	CREB3L3	19	4170211	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	1051363	4170211	54958772	1268	156853											
CHAF1A	10036	broad.mit.edu	37	chr19	4429821	4429821	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtcttcactcacagacGgcttgtgtttgagtctctgt	10	10	4	2	rs117668305	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	4429821	T	T	4429821	1	4	194	0	1	0	0	0	0	0	0	0	3342	1131	39	1		1	CHAF1A	19	4429821	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	259610	4429821	54699162	1269	156854											
LRG1	116844	broad.mit.edu	37	chr19	4539722	4539722	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccctggcccggcagccatCagacatgatctcgacagcct	9	16	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	4539722	G	G	4539722	1	3	194	0	1	0	0	0	0	0	0	0	9029	841	29	4		4	LRG1	19	4539722	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	109901	4539722	54589261	1270	156855											
SEMA6B	10501	broad.mit.edu	37	chr19	4552427	4552427	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttgctcccattggtgggCgctgacctgttgctgggcgt	15	10	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	4552427	T	T	4552427	1	4	194	0	1	0	0	0	0	0	0	0	14153	783	27	4		4	SEMA6B	19	4552427	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	12705	4552427	54576556	1271	156856											
LONP1	9361	broad.mit.edu	37	chr19	5692223	5692223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctgcgcgcttggcctgGgggcagagtcagggtcagcc	16	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	5692223	T	T	5692223	1	4	194	0	1	0	0	0	0	0	0	0	8979	1247	43	2		2	LONP1	19	5692223	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1139796	5692223	53436760	1272	156857											
TMEM146	257062	broad.mit.edu	37	chr19	5768341	5768341	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattaggaattttatttatTtatttatttatttattatta	2	0	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	5768341	G	G	5768341	1	3	194	0	1	0	0	0	0	0	0	0	16183	1856	64	5		5	TMEM146	19	5768341	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	76118	5768341	53360642	1273	156858											
DUS3L	56931	broad.mit.edu	37	chr19	5788290	5788290	+	Intron	DEL	G	-	-													agccccacaatccagtaggtGgggacagacactaagccctg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	5788290	-	-	5788290	6	5	194	0	1	1	0	1	0	0	0	0	4847	1363	47	0		0	DUS3L	19	5788290	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	19949	5788290	53340693	1274	156859											
TUBB4	10382	broad.mit.edu	37	chr19	6501469	6501469	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccacaggcgcccggtagCatcctgttccctcccagctg	10	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	6501469	T	T	6501469	1	4	194	0	1	0	0	0	0	0	0	0	16884	725	25	4		4	TUBB4	19	6501469	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	713179	6501469	52627514	1275	156860											
FBN3	84467	broad.mit.edu	37	chr19	8151238	8151238	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggggtgaggcaggtgggCggggaggccacaggcagcca	23	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	8151238	A	A	8151238	1	1	194	0	1	0	0	0	0	0	0	0	5761	783	27	3		3	FBN3	19	8151238	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1649769	8151238	50977745	1276	156861											
FBN3	84467	broad.mit.edu	37	chr19	8176733	8176733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggagaaagacccatcaaCcctccaaccctgactgcccc	7	17	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	8176733	A	A	8176733	1	1	194	0	1	0	0	0	0	0	0	0	5761	522	18	3		3	FBN3	19	8176733	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	25495	8176733	50952250	1277	156862											
MUC16	94025	broad.mit.edu	37	chr19	8982214	8982214	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagccgggtgatgccatGggtctgctggctcagctcat	14	13	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	8982214	T	T	8982214	3	4	194	1	0	0	0	0	1	0	0	0	10067	1348	47	2	1522	2	MUC16	19	8982214	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	805481	8982214	50146769	1278	156863											
MUC16	94025	broad.mit.edu	37	chr19	9072073	9072073	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttggctttcacattggtctCttctgtgtttatagaaggaa	10	6	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	9072073	A	A	9072073	4	1	194	1	0	0	0	0	0	1	0	0	10067	922	32	3	28478	3	MUC16	19	9072073	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	89859	9072073	50056910	1279	156864											
ZNF266	10781	broad.mit.edu	37	chr19	9529243	9529243	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtagaggtttctctgagttGggtccagtaaagtccattct	11	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	9529243	C	C	9529243	1	2	194	0	1	0	0	0	0	0	0	0	17931	1363	47	4		4	ZNF266	19	9529243	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	457170	9529243	49599740	1280	156865											
ZNF561	93134	broad.mit.edu	37	chr19	9730039	9730039	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgctcaggctcagctcaCtggacgcttgtgttgtggag	14	11	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	9730039	A	A	9730039	1	1	194	0	1	0	0	0	0	0	0	0	18119	580	20	3		3	ZNF561	19	9730039	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	200796	9730039	49398944	1281	156866											
ANGPTL6	83854	broad.mit.edu	37	chr19	10205580	10205580	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacccacaagacggaccGgaaccacaggcaccagtggg	12	14	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10205580	T	T	10205580	3	4	194	1	0	0	0	0	1	0	0	0	618	1116	39	1	811	1	ANGPTL6	19	10205580	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	475541	10205580	48923403	1282	156867											
KEAP1	9817	broad.mit.edu	37	chr19	10602328	10602328	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccatcgatgacccccaccCcgatgcggttacggggcacg	13	16	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	10602328	T	T	10602328	3	4	194	1	0	0	0	0	1	0	0	0	8211	623	22	4	640	4	KEAP1	19	10602328	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	396748	10602328	48526655	1283	156868											
SMARCA4	6597	broad.mit.edu	37	chr19	11138587	11138588	+	Frame_Shift_Ins	INS	-	A	A													catgaccatcatggaagattINSactttgcgtatcgcggcttt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	11138588	A	A	11138587	7	5	194	1	0	1	1	0	0	0	0	0	14884	1754	61	0	3433	0	SMARCA4	19	11138587	Frame_Shift_Ins	INS	-	TCGA-67-3771-01A-01D-1040-01	536259	11138587	47990396	1284	156869											
LDLR	3949	broad.mit.edu	37	chr19	11238690	11238691	+	Frame_Shift_Del	DEL	GC	-	-													cttctctcctgcagctctggGcgacgttgctggcagaggaa							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	11238691	-	-	11238690	7	5	194	1	0	1	0	1	0	0	0	0	8776	1203	42	0	2380	0	LDLR	19	11238690	Frame_Shift_Del	DEL	GC	TCGA-67-3771-01A-01D-1040-01	100103	11238690	47890293	1285	156870											
CCDC151	115948	broad.mit.edu	37	chr19	11542026	11542026	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accacagtctccgcctcccgGgttcaagagattctcctgct	8	16	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	11542026	C	C	11542026	1	2	194	0	1	0	0	0	0	0	0	0	2812	1247	43	4		4	CCDC151	19	11542026	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	303336	11542026	47586957	1286	156871											
ZNF491	126069	broad.mit.edu	37	chr19	11917571	11917571	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgagaatgcacactggagAgaggcctcataaatgtaaga	11	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11917571	T	T	11917571	3	4	194	1	0	0	0	0	1	0	0	0	18069	304	11	5	805	5	ZNF491	19	11917571	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	375545	11917571	47211412	1287	156872											
ZNF799	90576	broad.mit.edu	37	chr19	12502558	12502558	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggtttctctccagtgtgCgttctctcatgcatatgtaa	8	9	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	12502558	A	A	12502558	2	1	194	1	0	0	0	0	0	0	0	1	18295	755	27	3		3	ZNF799	19	12502558	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	584987	12502558	46626425	1288	156873											
MAST1	22983	broad.mit.edu	37	chr19	12958373	12958373	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacatcttggggcgggggctCtctgcgggcttggaggcaga	18	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	12958373	G	G	12958373	1	3	194	0	1	0	0	0	0	0	0	0	9416	928	32	4		4	MAST1	19	12958373	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	455815	12958373	46170610	1289	156874											
CACNA1A	773	broad.mit.edu	37	chr19	13368154	13368154	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttaaaggacagatggaattgGaagtggcacctcatttttct	10	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	13368154	C	C	13368154	1	2	194	0	1	0	0	0	0	0	0	0	2564	1189	41	4		4	CACNA1A	19	13368154	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	409781	13368154	45760829	1290	156875											
CACNA1A	773	broad.mit.edu	37	chr19	13443769	13443769	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagcacagagttaagctcCtgcatttggaggatgagttc	12	7	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	13443769	T	T	13443769	1	4	194	0	1	0	0	0	0	0	0	0	2564	696	24	4		4	CACNA1A	19	13443769	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	75615	13443769	45685214	1291	156876											
CC2D1A	54862	broad.mit.edu	37	chr19	14029041	14029041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacggacaggactggagggaTggggcaggatgcttcccacg	18	9	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	14029041	C	C	14029041	1	2	194	0	1	0	0	0	0	0	0	0	2752	1479	51	5		5	CC2D1A	19	14029041	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	585272	14029041	45099942	1292	156877											
RFX1	5989	broad.mit.edu	37	chr19	14077445	14077445	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccacctggccaccctacCtcacagtgttcccggtacag	8	18	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	14077445	T	T	14077445	2	4	194	1	0	0	0	0	0	0	0	1	13370	695	24	4		4	RFX1	19	14077445	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	48404	14077445	45051538	1293	156878											
CLEC17A	388512	broad.mit.edu	37	chr19	14710889	14710889	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctggctgccctttgagggCaagtgttactacttctcccc	11	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	14710889	G	G	14710889	2	3	194	1	0	0	0	0	0	0	0	1	3533	697	25	4		4	CLEC17A	19	14710889	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	633444	14710889	44418094	1294	156879											
BRD4	23476	broad.mit.edu	37	chr19	15366997	15366997	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttcttttttcttttccttCttgtctttctcctttttctt	1	10	6	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	15366997	G	G	15366997	3	3	194	1	0	0	0	0	1	0	0	0	1513	912	32	4	2522	4	BRD4	19	15366997	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	656108	15366997	43761986	1295	156880											
DDA1	79016	broad.mit.edu	37	chr19	17420415	17420415	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcggctctggtggcgGcggtggaggctgaggcggcg	23	8	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17420415	A	A	17420415	1	1	194	0	1	0	0	0	0	0	0	0	4353	1218	42	4		4	DDA1	19	17420415	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	2053418	17420415	41708568	1296	156881											
UNC13A	23025	broad.mit.edu	37	chr19	17721043	17721043	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccacttcgggaggccaaGgcgggtggatcacttgagtc	14	12	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17721043	A	A	17721043	1	1	194	0	1	0	0	0	0	0	0	0	17110	1015	35	4		4	UNC13A	19	17721043	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	300628	17721043	41407940	1297	156882											
UNC13A	23025	broad.mit.edu	37	chr19	17738541	17738541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagaccgttatgctgcaagCctgggtttaaggccatggtt	12	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17738541	A	A	17738541	1	1	194	0	1	0	0	0	0	0	0	0	17110	754	26	3		3	UNC13A	19	17738541	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	17498	17738541	41390442	1298	156883											
FCHO1	23149	broad.mit.edu	37	chr19	17893966	17893966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcacttccagcccaacgCcgatctgctgttcaggtact	9	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	17893966	A	A	17893966	3	1	194	1	0	0	0	0	1	0	0	0	5844	739	26	3	2160	3	FCHO1	19	17893966	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	155425	17893966	41235017	1299	156884											
SFRS14	10147	broad.mit.edu	37	chr19	19141921	19141921	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagagaaaaaaatacactaaGagcaacaacttggagctggg	11	6	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	19141921	C	C	19141921	1	2	194	0	1	0	0	0	0	0	0	0	14283	957	33	4		4	SFRS14	19	19141921	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1247955	19141921	39987062	1300	156885											
ZNF257	113835	broad.mit.edu	37	chr19	22257840	22257840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctataaactagtttcaggagGtaaagatcttcttccattgg	8	7	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	22257840	T	T	22257840	1	4	194	0	1	0	0	0	0	0	0	0	17926	1276	44	3		3	ZNF257	19	22257840	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3115919	22257840	36871143	1301	156886											
ZNF676	163223	broad.mit.edu	37	chr19	22363185	22363185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacatttgtagggtttctctCcagcatgaattctcttgtgt	8	9	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363185	A	A	22363185	3	1	194	1	0	0	0	0	1	0	0	0	18210	855	30	3	436	3	ZNF676	19	22363185	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	105345	22363185	36765798	1302	156887											
ZNF254	9534	broad.mit.edu	37	chr19	24310356	24310356	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catactggagagaaaccctaCaaatgtgaagaatgtggcaa	10	7	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	24310356	G	G	24310356	4	3	194	1	0	0	0	0	0	1	0	0	17924	489	17	4	1568	4	ZNF254	19	24310356	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1947171	24310356	34818627	1303	156888											
TSHZ3	57616	broad.mit.edu	37	chr19	31769448	31769448	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttcccctttttcatagcAgagttggtgaccttgatgaa	10	9	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	31769448	G	G	31769448	2	3	194	1	0	0	0	0	0	0	0	1	16750	175	7	5		5	TSHZ3	19	31769448	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	7459092	31769448	27359535	1304	156889											
KCTD15	79047	broad.mit.edu	37	chr19	34302540	34302540	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagtgagctggagggaggCgcgatccctgaaacggtgaa	17	8	0	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	34302540	T	T	34302540	1	4	194	0	1	0	0	0	0	0	0	0	8172	783	27	4		4	KCTD15	19	34302540	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2533092	34302540	24826443	1305	156890											
PRODH2	58510	broad.mit.edu	37	chr19	36297252	36297252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctcagcctcccaaagcaCtgggattacaggtatgagcc	10	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	36297252	A	A	36297252	1	1	194	0	1	0	0	0	0	0	0	0	12655	580	20	3		3	PRODH2	19	36297252	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1994712	36297252	22831731	1306	156891											
APLP1	333	broad.mit.edu	37	chr19	36369786	36369786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctgacacctcctgctcCcccaggtgaatgcgtctgtt	9	15	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	36369786	A	A	36369786	1	1	194	0	1	0	0	0	0	0	0	0	780	638	22	2		2	APLP1	19	36369786	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	72534	36369786	22759197	1307	156892											
SIRT2	22933	broad.mit.edu	37	chr19	39389219	39389219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagagggagggaggggaCggagaaaagatcttatctac	17	5	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39389219	A	A	39389219	1	1	194	0	1	0	0	0	0	0	0	0	14451	551	19	3		3	SIRT2	19	39389219	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3019433	39389219	19739764	1308	156893											
PAPL	390928	broad.mit.edu	37	chr19	39576129	39576139	+	Intron	DEL	GGGTGGCTCAT	-	-													cacactgtgagcccctaggcGggtggctcattcctcctgag					rs139016860	by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	39576139	-	-	39576129	6	5	194	0	1	1	0	1	0	0	0	0	11521	1131	39	0		0	PAPL	19	39576129	Intron	DEL	GGGTGGCTCAT	TCGA-67-3771-01A-01D-1040-01	186910	39576129	19552854	1309	156894											
ZFP36	7538	broad.mit.edu	37	chr19	39898382	39898382	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaccgacccatttccgcaGagcctcctgtcgctgagccc	8	17	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	39898382	T	T	39898382	5	4	194	1	0	0	0	0	0	0	1	0	17771	956	33	3	30	3	ZFP36	19	39898382	Splice_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	322253	39898382	19230601	1310	156895											
PLEKHG2	64857	broad.mit.edu	37	chr19	39914254	39914254	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgggttctggcccaacccCagccatccccctgtctgccc	8	21	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	39914254	T	T	39914254	4	4	194	1	0	0	0	0	0	1	0	0	12164	595	21	4	2626	4	PLEKHG2	19	39914254	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	15872	39914254	19214729	1311	156896											
ADCK4	79934	broad.mit.edu	37	chr19	41215893	41215893	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaaactggagctcagaGgggtgaagtcacttgcccca	14	9	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	41215893	A	A	41215893	1	1	194	0	1	0	0	0	0	0	0	0	290	1015	35	4		4	ADCK4	19	41215893	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1301639	41215893	17913090	1312	156897											
CYP2A13	1553	broad.mit.edu	37	chr19	41601045	41601045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaggccacggctcacacCagcaggggcctctctcaccc	10	19	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	41601045	A	A	41601045	1	1	194	0	1	0	0	0	0	0	0	0	4194	609	21	2		2	CYP2A13	19	41601045	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	385152	41601045	17527938	1313	156898											
CYP2S1	29785	broad.mit.edu	37	chr19	41700360	41700360	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtagaagctagacccgGtggctcctcaagtgacaggg	16	10	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	41700360	C	C	41700360	1	2	194	0	1	0	0	0	0	0	0	0	4207	1276	44	4		4	CYP2S1	19	41700360	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	99315	41700360	17428623	1314	156899											
ARHGEF1	9138	broad.mit.edu	37	chr19	42407924	42407924	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagagcagcgaccctatgctGagcgagttcaaggtgtgacc	13	11	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	42407924	T	T	42407924	2	4	194	1	0	0	0	0	0	0	0	1	895	1277	45	3		3	ARHGEF1	19	42407924	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	707564	42407924	16721059	1315	156900											
POU2F2	5452	broad.mit.edu	37	chr19	42621437	42621437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtcaacatgagttgggCctggggcagatgaggctggg	18	9	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	42621437	A	A	42621437	3	1	194	1	0	0	0	0	1	0	0	0	12368	739	26	3	1163	3	POU2F2	19	42621437	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	213513	42621437	16507546	1316	156901											
ZNF526	116115	broad.mit.edu	37	chr19	42730041	42730041	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accacctgcggacacacacgGgtgagaggcccttccagtgc	12	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	42730041	C	C	42730041	3	2	194	1	0	0	0	0	1	0	0	0	18094	1232	43	4	1488	4	ZNF526	19	42730041	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	108604	42730041	16398942	1317	156902											
CIC	23152	broad.mit.edu	37	chr19	42791043	42791043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcccagcaacctgccaGccacccagtggcctccaacc	9	20	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	42791043	T	T	42791043	3	4	194	1	0	0	0	0	1	0	0	0	3455	971	34	3	194	3	CIC	19	42791043	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	61002	42791043	16337940	1318	156903											
PSG1	5669	broad.mit.edu	37	chr19	43371807	43371807	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatatcaattctcatgaatAgttgcccaattctggggcag	8	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	43371807	T	T	43371807	1	4	194	0	1	0	0	0	0	0	0	0	12759	435	15	5		5	PSG1	19	43371807	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	580764	43371807	15757176	1319	156904											
PSG11	5680	broad.mit.edu	37	chr19	43530537	43530537	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccccatgatctctgctgcGtgcatgttctcctctgtgga	11	13	3	1	rs1064913		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	43530537	A	A	43530537	1	1	194	1	0	0	0	0	0	0	0	0	12760	1160	40	4		4	PSG11	19	43530537	Translation_Start_Site	SNP	G	TCGA-67-3771-01A-01D-1040-01	158730	43530537	15598446	1320	156905											
PSG2	5670	broad.mit.edu	37	chr19	43576091	43576092	+	Missense_Mutation	DNP	GG	TT	TT													tgtatgaagggtgaattctgGggaggtctggaccatctgga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	43576092	TT	TT	43576091	3	4	194	1	0	0	0	0	1	0	0	0	12761	1232	43	2	290	2	PSG2	19	43576091	Missense_Mutation	DNP	GG	TCGA-67-3771-01A-01D-1040-01	45554	43576091	15552892	1321	156906											
PSG6	5675	broad.mit.edu	37	chr19	43593578	43593579	+	Intron	DNP	GG	AT	AT													ggaggaactagtagaattcaGggaactgtccagtctacagg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	43593579	AT	AT	43593578	1	1	194	0	1	0	0	0	0	0	0	0	12765	1015	35	4		4	PSG6	19	43593578	Intron	DNP	GG	TCGA-67-3771-01A-01D-1040-01	17487	43593578	15535405	1322	156907											
ZNF222	7673	broad.mit.edu	37	chr19	44537213	44537213	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttatggagtgtgaaatttGatacatgtatataatgtgtg	10	1	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	44537213	C	C	44537213	1	2	194	0	1	0	0	0	0	0	0	0	17902	1305	45	4		4	ZNF222	19	44537213	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	943635	44537213	14591770	1323	156908											
PPM1N	147699	broad.mit.edu	37	chr19	46003650	46003650	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgatccgcccgccttggtctCccaaagtgctgggattacag	11	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	46003650	G	G	46003650	1	3	194	0	1	0	0	0	0	0	0	0	12447	870	30	4		4	PPM1N	19	46003650	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1466437	46003650	13125333	1324	156909											
GPR4	2828	broad.mit.edu	37	chr19	46094344	46094344	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcagaaaagacgcgctcctCgaagccgcagtcccaggggc	13	14	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46094344	A	A	46094344	4	1	194	1	0	0	0	0	0	1	0	0	6759	893	31	3	311	3	GPR4	19	46094344	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	90694	46094344	13034639	1325	156910											
NOVA2	4858	broad.mit.edu	37	chr19	46443465	46443465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcggccaccagcgggcCgccccctccgcccgccccgc	12	24	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46443465	A	A	46443465	3	1	194	1	0	0	0	0	1	0	0	0	10650	652	23	1	347	1	NOVA2	19	46443465	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	349121	46443465	12685518	1326	156911											
PLA2G4C	8605	broad.mit.edu	37	chr19	48578088	48578088	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggtcctggtccaattctcGagcatctcagtcagccaggt	11	12	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	48578088	A	A	48578088	2	1	194	1	0	0	0	0	0	0	0	1	12098	1045	37	4		4	PLA2G4C	19	48578088	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	2134623	48578088	10550895	1327	156912											
PPFIA3	8541	broad.mit.edu	37	chr19	49646213	49646225	+	Frame_Shift_Del	DEL	GGAGATGGTCTCG	-	-													aagctacgcctcgccatccaGgagatggtctcgctcacctc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	49646225	-	-	49646213	7	5	194	1	0	1	0	1	0	0	0	0	12407	991	35	0	2775	0	PPFIA3	19	49646213	Frame_Shift_Del	DEL	GGAGATGGTCTCG	TCGA-67-3771-01A-01D-1040-01	1068125	49646213	9482770	1328	156913											
PTOV1	53635	broad.mit.edu	37	chr19	50360333	50360333	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgggcctcatcccctaCgaccagagcggcttcgtcag	10	15	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	50360333	T	T	50360333	2	4	194	1	0	0	0	0	0	0	0	1	12875	547	19	4		4	PTOV1	19	50360333	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	714120	50360333	8768650	1329	156914											
PNKP	11284	broad.mit.edu	37	chr19	50367697	50367697	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagacaaacagcagcactgtGatacctctgaccctcctcac	6	15	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	50367697	C	C	50367697	1	2	194	0	1	0	0	0	0	0	0	0	12242	1305	45	4		4	PNKP	19	50367697	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	7364	50367697	8761286	1330	156915											
TBC1D17	79735	broad.mit.edu	37	chr19	50384521	50384521	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaacacagtgccgtctccCtaggtgcagagcccagctgc	10	17	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	50384521	T	T	50384521	1	4	194	0	1	0	0	0	0	0	0	0	15725	696	24	4		4	TBC1D17	19	50384521	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	16824	50384521	8744462	1331	156916											
MYBPC2	4606	broad.mit.edu	37	chr19	50945490	50945490	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggacagaggcaacaagatCaagttgatggtagagatcag	14	5	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	50945490	A	A	50945490	2	1	194	1	0	0	0	0	0	0	0	1	10106	816	29	3		3	MYBPC2	19	50945490	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	560969	50945490	8183493	1332	156917											
SIGLEC7	27036	broad.mit.edu	37	chr19	51656192	51656192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtgggatagaggcaggaaCtcatgaagtttaattctata	11	5	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	51656192	A	A	51656192	1	1	194	0	1	0	0	0	0	0	0	0	14426	580	20	3		3	SIGLEC7	19	51656192	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	710702	51656192	7472791	1333	156918											
CD33	945	broad.mit.edu	37	chr19	51728894	51728894	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggccgcaagggaagttcAtgggtactgcagggcagggc	18	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51728894	T	T	51728894	1	4	194	0	1	0	0	0	0	0	0	0	3035	232	8	5		5	CD33	19	51728894	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	72702	51728894	7400089	1334	156919											
CD33	945	broad.mit.edu	37	chr19	51738435	51738435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagagaccagagcaggaGtggttcatggggccattgga	15	7	1	2	rs1051198		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51738435	T	T	51738435	3	4	194	1	0	0	0	0	1	0	0	0	3035	1029	36	3	787	3	CD33	19	51738435	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	9541	51738435	7390548	1335	156920											
CD33	945	broad.mit.edu	37	chr19	51742776	51742776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcctctccataagaaaCaccagaagaagtccaagtta	5	11	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	51742776	A	A	51742776	3	1	194	1	0	0	0	0	1	0	0	0	3035	478	17	3	967	3	CD33	19	51742776	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	4341	51742776	7386207	1336	156921											
IGLON5	402665	broad.mit.edu	37	chr19	51825271	51825271	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggtgctaccatgcccGggccttgcctgagctgccaa	13	14	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51825271	T	T	51825271	1	4	194	0	1	0	0	0	0	0	0	0	7665	1131	39	1		1	IGLON5	19	51825271	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	82495	51825271	7303712	1337	156922											
SIGLEC12	89858	broad.mit.edu	37	chr19	51994903	51994903	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcagtttctcacttggGgatgttgatctcggagtact	11	9	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	51994903	T	T	51994903	3	4	194	1	0	0	0	0	1	0	0	0	14421	1232	43	2	11	2	SIGLEC12	19	51994903	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	169632	51994903	7134080	1338	156923											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52147285	52147285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccattgctcaggatccgCagggctgggaaagagaagca	14	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52147285	A	A	52147285	2	1	194	1	0	0	0	0	0	0	0	1	14422	697	25	3		3	SIGLEC14	19	52147285	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	152382	52147285	6981698	1339	156924											
FPR3	2359	broad.mit.edu	37	chr19	52327146	52327146	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcaatgggcttgtgatcTgggtggctggattccggatg	18	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52327146	A	A	52327146	3	1	194	1	0	0	0	0	1	0	0	0	6100	1580	55	5	147	5	FPR3	19	52327146	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	179861	52327146	6801837	1340	156925											
ZNF649	65251	broad.mit.edu	37	chr19	52394608	52394608	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acattcactgcacccgtatgGtttctctcctttgtgagctc	7	13	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	52394608	C	C	52394608	3	2	194	1	0	0	0	0	1	0	0	0	18191	1261	44	4	740	4	ZNF649	19	52394608	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	67462	52394608	6734375	1341	156926											
PPP2R1A	5518	broad.mit.edu	37	chr19	52719320	52719320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtcccagatcttgccctGcatcaaggtaacagagagtt	9	11	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	52719320	T	T	52719320	3	4	194	1	0	0	0	0	1	0	0	0	12483	1319	46	3	1016	3	PPP2R1A	19	52719320	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	324712	52719320	6409663	1342	156927											
CNOT3	4849	broad.mit.edu	37	chr19	54652318	54652318	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgggcggggctgggcagCaggcagcagccctttccatt	17	12	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	54652318	T	T	54652318	1	4	194	0	1	0	0	0	0	0	0	0	3652	725	25	4		4	CNOT3	19	54652318	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1932998	54652318	4476665	1343	156928											
TTYH1	57348	broad.mit.edu	37	chr19	54940621	54940621	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctggagacttcaacttctgGatctcgggatggcatggctt	12	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	54940621	C	C	54940621	1	2	194	0	1	0	0	0	0	0	0	0	16865	1189	41	4		4	TTYH1	19	54940621	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	288303	54940621	4188362	1344	156929											
KIR3DL1	3811	broad.mit.edu	37	chr19	55327927	55327927	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgagctgagctggggCgcagccgcctgtctgcaccg	16	14	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55327927	A	A	55327927	1	1	194	0	1	0	0	0	0	0	0	0	8391	783	27	3		3	KIR3DL1	19	55327927	5'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	387306	55327927	3801056	1345	156930											
TNNI3	7137	broad.mit.edu	37	chr19	55668986	55668986	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggccgggaatggcaggaGgcagggcgaggacaggggcg	22	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55668986	A	A	55668986	1	1	194	0	1	0	0	0	0	0	0	0	16451	1015	35	4		4	TNNI3	19	55668986	5'Flank	SNP	G	TCGA-67-3771-01A-01D-1040-01	341059	55668986	3459997	1346	156931											
TMEM190	147744	broad.mit.edu	37	chr19	55889138	55889138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggtctggcggtcgggagCcccgggtcttaaccctgcct	16	13	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55889138	A	A	55889138	1	1	194	0	1	0	0	0	0	0	0	0	16237	754	26	3		3	TMEM190	19	55889138	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	220152	55889138	3239845	1347	156932											
ZNF628	89887	broad.mit.edu	37	chr19	55993190	55993190	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccgctgcccgctctgcccCaagaccttcacccactcctc	5	22	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	55993190	T	T	55993190	2	4	194	1	0	0	0	0	0	0	0	1	18179	581	21	4		4	ZNF628	19	55993190	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	104052	55993190	3135793	1348	156933											
NLRP4	147945	broad.mit.edu	37	chr19	56382250	56382250	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatctctgaaatgcttctGcgtaacaagagcgtgcgcta	9	10	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	56382250	A	A	56382250	2	1	194	1	0	0	0	0	0	0	0	1	10574	1306	46	4		4	NLRP4	19	56382250	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	389060	56382250	2746733	1349	156934											
NLRP8	126205	broad.mit.edu	37	chr19	56465808	56465808	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttttcttattgctctatTagttcttgcaattcactctg	6	8	5	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	56465808	G	G	56465808	1	3	194	0	1	0	0	0	0	0	0	0	10578	1769	61	5		5	NLRP8	19	56465808	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	83558	56465808	2663175	1350	156935											
NLRP5	126206	broad.mit.edu	37	chr19	56544115	56544115	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaccctgtgtgccaagctGaggcatcccacctgcaagat	10	13	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	56544115	C	C	56544115	2	2	194	1	0	0	0	0	0	0	0	1	10575	1277	45	4		4	NLRP5	19	56544115	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	78307	56544115	2584868	1351	156936											
PEG3	5178	broad.mit.edu	37	chr19	57330170	57330170	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttacatatatgaagttatAtaggaagtgctcacggtatt	9	4	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	57330170	G	G	57330170	1	3	194	0	1	0	0	0	0	0	0	0	11814	464	16	5		5	PEG3	19	57330170	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	786055	57330170	1798813	1352	156937											
ZIM3	114026	broad.mit.edu	37	chr19	57649865	57649865	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagacaaggttgctgtaattCtccagcatcacatccctgta	8	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	57649865	G	G	57649865	3	3	194	1	0	0	0	0	1	0	0	0	17811	912	32	4	1313	4	ZIM3	19	57649865	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	319695	57649865	1479118	1353	156938											
ZNF416	55659	broad.mit.edu	37	chr19	58087249	58087249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctcatcaaggagccccCattcttcctgggagaagtaa	10	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	58087249	A	A	58087249	3	1	194	1	0	0	0	0	1	0	0	0	18020	595	21	2	1667	2	ZNF416	19	58087249	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	437384	58087249	1041734	1354	156939											
ZSCAN1	284312	broad.mit.edu	37	chr19	58565262	58565268	+	Frame_Shift_Del	DEL	CCCGGGA	-	-													agccccccggagcaagggccCccgggagtccgtcccaccca					rs144536843	byFrequency	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	58565268	-	-	58565262	7	5	194	1	0	1	0	1	0	0	0	0	18355	623	22	0	1084	0	ZSCAN1	19	58565262	Frame_Shift_Del	DEL	CCCGGGA	TCGA-67-3771-01A-01D-1040-01	478013	58565262	563721	1355	156940											
ZSCAN18	65982	broad.mit.edu	37	chr19	58598331	58598331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggcagggtccaggtggccCcactcccccaggtgctgagg	15	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	58598331	A	A	58598331	3	1	194	1	0	0	0	0	1	0	0	0	18359	624	22	2	857	2	ZSCAN18	19	58598331	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	33069	58598331	530652	1356	156941											
DEFB128	245939	broad.mit.edu	37	chr20	170382	170382	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcgctcggagctctcatttTaacccacacagacagagagg	10	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	170382	A	A	170382	1	1	194	0	1	0	0	0	0	0	0	0	4453	1769	61	5		5	DEFB128	20	170382	5'Flank	SNP	T	TCGA-67-3771-01A-01D-1040-01		170382	62855138	1357	156942											
NSFL1C	55968	broad.mit.edu	37	chr20	1424459	1424459	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcagggtctggctctcatCagccagctctttgttcggga	11	12	5	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	1424459	A	A	1424459	3	1	194	1	0	0	0	0	1	0	0	0	10767	826	29	3	68	3	NSFL1C	20	1424459	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1254077	1424459	61601061	1358	156943											
TGM6	343641	broad.mit.edu	37	chr20	2411261	2411262	+	Intron	DNP	CA	AT	AT													atcaaggtgacctcagcctgCatctaccatgctgttcctag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	2411262	AT	AT	2411261	1	1	194	0	1	0	0	0	0	0	0	0	15957	725	25	3		3	TGM6	20	2411261	Intron	DNP	CA	TCGA-67-3771-01A-01D-1040-01	986802	2411261	60614259	1359	156944											
TMC2	117532	broad.mit.edu	37	chr20	2560534	2560534	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccaccacacacataaagtGctcaatagtgtccatttttt	4	11	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	2560534	A	A	2560534	1	1	194	0	1	0	0	0	0	0	0	0	16108	1334	46	4		4	TMC2	20	2560534	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	149273	2560534	60464986	1360	156945											
PTPRA	5786	broad.mit.edu	37	chr20	2985552	2985552	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgggggagaggagcattctCtgtgttaggctgcaggtatt	16	6	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	2985552	G	G	2985552	1	3	194	0	1	0	0	0	0	0	0	0	12903	928	32	4		4	PTPRA	20	2985552	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	425018	2985552	60039968	1361	156946											
PTPRA	5786	broad.mit.edu	37	chr20	3003289	3003289	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctccctatctgctcccaCaaggcaggctggccatccct	7	20	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	3003289	G	G	3003289	1	3	194	0	1	0	0	0	0	0	0	0	12903	493	17	4		4	PTPRA	20	3003289	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	17737	3003289	60022231	1362	156947											
FASTKD5	60493	broad.mit.edu	37	chr20	3127278	3127278	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcacagtaacatacactaGctctaacctgccttggatac	5	12	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	3127278	T	T	3127278	1	4	194	0	1	0	0	0	0	0	0	0	5745	986	34	3		3	FASTKD5	20	3127278	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	123989	3127278	59898242	1363	156948											
ATRN	8455	broad.mit.edu	37	chr20	3541497	3541497	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgagtggtcatgctggtcatCtttggtcactgccctctcta	10	12	5	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	3541497	G	G	3541497	3	3	194	1	0	0	0	0	1	0	0	0	1210	903	32	4	1422	4	ATRN	20	3541497	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	414219	3541497	59484023	1364	156949											
SEL1L2	80343	broad.mit.edu	37	chr20	13845697	13845697	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatagtttgaaatgtcacCtacttgatattctacccttt	5	8	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	13845697	A	A	13845697	1	1	194	0	1	0	0	0	0	0	0	0	14124	696	24	2		2	SEL1L2	20	13845697	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	10304200	13845697	49179823	1365	156950											
MACROD2	140733	broad.mit.edu	37	chr20	13983119	13983119	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaattgttgacagaaatgaAtaactggcgttcaataaaga	8	5	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	13983119	G	G	13983119	1	3	194	0	1	0	0	0	0	0	0	0	9234	116	4	5		5	MACROD2	20	13983119	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	137422	13983119	49042401	1366	156951											
KIF16B	55614	broad.mit.edu	37	chr20	16348016	16348016	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctactgttgacacatttttCttttctggaacaacaacaca	4	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	16348016	G	G	16348016	1	3	194	0	1	0	0	0	0	0	0	0	8348	928	32	4		4	KIF16B	20	16348016	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2364897	16348016	46677504	1367	156952											
KIF16B	55614	broad.mit.edu	37	chr20	16359917	16359917	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgattctgcaggaggtaCtgtagctggcgttctttata	12	6	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	16359917	T	T	16359917	2	4	194	1	0	0	0	0	0	0	0	1	8348	564	20	4		4	KIF16B	20	16359917	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	11901	16359917	46665603	1368	156953											
SEC23B	10483	broad.mit.edu	37	chr20	18485257	18485257	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctccctttcccctggctGgcagcgcggaagccgcacga	12	16	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18485257	A	A	18485257	1	1	194	0	1	0	0	0	0	0	0	0	14105	1363	47	4		4	SEC23B	20	18485257	5'Flank	SNP	G	TCGA-67-3771-01A-01D-1040-01	2125340	18485257	44540263	1369	156954											
NAA20	51126	broad.mit.edu	37	chr20	19998524	19998524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggcagagggcaccgcCgacggccaggccgcagaggg	18	13	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	19998524	T	T	19998524	1	4	194	0	1	0	0	0	0	0	0	0	10214	667	23	4		4	NAA20	20	19998524	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1513267	19998524	43026996	1370	156955											
NAPB	63908	broad.mit.edu	37	chr20	23375833	23375833	+	Intron	DEL	G	-	-													ttgatagcctctgaagcgtaGgcatttaagaaaaacaatga							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	23375833	-	-	23375833	6	5	194	0	1	1	0	1	0	0	0	0	10256	1015	35	0		0	NAPB	20	23375833	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	3377309	23375833	39649687	1371	156956											
CST1	1469	broad.mit.edu	37	chr20	23729627	23729627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgcagtgcatgactgGcccgggacctgcatcaggaa	12	14	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	23729627	T	T	23729627	1	4	194	0	1	0	0	0	0	0	0	0	4004	1218	42	3		3	CST1	20	23729627	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	353794	23729627	39295893	1372	156957											
NINL	22981	broad.mit.edu	37	chr20	25493374	25493374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacggtggctgccctccCcatatcttgtgattatgtgc	11	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	25493374	A	A	25493374	1	1	194	0	1	0	0	0	0	0	0	0	10515	638	22	2		2	NINL	20	25493374	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1763747	25493374	37532146	1373	156958											
DEFB119	245932	broad.mit.edu	37	chr20	29966127	29966127	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccaaccaaggcagtaccaGaggaaatacacctggacttc	8	13	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	29966127	C	C	29966127	1	2	194	0	1	0	0	0	0	0	0	0	4446	957	33	4		4	DEFB119	20	29966127	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4472753	29966127	33059393	1374	156959											
COX4I2	84701	broad.mit.edu	37	chr20	30232608	30232608	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atcaccttgacggacgagcgGaaagcccagcagctgcagcg	13	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	30232608	C	C	30232608	2	2	194	1	0	0	0	0	0	0	0	1	3802	1161	41	4		4	COX4I2	20	30232608	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	266481	30232608	32792912	1375	156960											
C20orf160	140706	broad.mit.edu	37	chr20	30610285	30610285	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcactgaattctataaagGggttctaagatccagagagt	10	6	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	30610285	C	C	30610285	1	2	194	0	1	0	0	0	0	0	0	0	2115	1247	43	4		4	C20orf160	20	30610285	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	377677	30610285	32415235	1376	156961											
HCK	3055	broad.mit.edu	37	chr20	30667605	30667605	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaagggcatcagccggaagGacgcagagcgccaactgctg	14	12	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	30667605	C	C	30667605	3	2	194	1	0	0	0	0	1	0	0	0	7060	1174	41	4	485	4	HCK	20	30667605	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	57320	30667605	32357915	1377	156962											
PLAGL2	5326	broad.mit.edu	37	chr20	30784777	30784777	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggattccagagggtagctCatacccatgggcagcgtgtt	14	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	30784777	G	G	30784777	3	3	194	1	0	0	0	0	1	0	0	0	12115	826	29	4	525	4	PLAGL2	20	30784777	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	117172	30784777	32240743	1378	156963											
ASXL1	171023	broad.mit.edu	37	chr20	31016158	31016158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaacatcttcgaacgcatCctgttctacagaatctcaga	6	11	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31016158	A	A	31016158	3	1	194	1	0	0	0	0	1	0	0	0	1070	855	30	3	432	3	ASXL1	20	31016158	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	231381	31016158	32009362	1379	156964											
MAPRE1	22919	broad.mit.edu	37	chr20	31434628	31434628	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttacatagaagggttgGtgaactctgtgctgatgctt	11	6	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31434628	T	T	31434628	1	4	194	0	1	0	0	0	0	0	0	0	9386	1276	44	3		3	MAPRE1	20	31434628	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	418470	31434628	31590892	1380	156965											
BPIL3	128859	broad.mit.edu	37	chr20	31620702	31620702	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgccatcgtccagcccAgggtggggcacagtgacggt	14	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	31620702	G	G	31620702	1	3	194	0	1	0	0	0	0	0	0	0	1502	203	7	5		5	BPIL3	20	31620702	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	186074	31620702	31404818	1381	156966											
C20orf186	149954	broad.mit.edu	37	chr20	31676933	31676933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggggcctgcaggtaaccCagagggacagagagagccaa	16	10	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31676933	A	A	31676933	1	1	194	0	1	0	0	0	0	0	0	0	2120	609	21	2		2	C20orf186	20	31676933	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	56231	31676933	31348587	1382	156967											
NCOA6	23054	broad.mit.edu	37	chr20	33328826	33328826	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagaagacgtacaaggagggGaaggaagctgaacaggggtg	19	4	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	33328826	A	A	33328826	3	1	194	1	0	0	0	0	1	0	0	0	10328	1174	41	4	977	4	NCOA6	20	33328826	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1651893	33328826	29696694	1383	156968											
GGT7	2686	broad.mit.edu	37	chr20	33438059	33438059	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagagagggaaagtgaagTccagcaaggaaaatgactta	12	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	33438059	C	C	33438059	1	2	194	0	1	0	0	0	0	0	0	0	6428	1682	58	5		5	GGT7	20	33438059	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	109233	33438059	29587461	1384	156969											
GGT7	2686	broad.mit.edu	37	chr20	33442458	33442458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatatggaagaggctgccaGgcccctcccagaacccacac	11	15	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	33442458	T	T	33442458	1	4	194	0	1	0	0	0	0	0	0	0	6428	1015	35	2		2	GGT7	20	33442458	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	4399	33442458	29583062	1385	156970											
MYH7B	57644	broad.mit.edu	37	chr20	33572642	33572642	+	Intron	DEL	C	-	-													agaactgacagaccccctcaCccccaccgccccagggcacc							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	33572642	-	-	33572642	6	5	194	0	1	1	0	1	0	0	0	0	10134	522	18	0		0	MYH7B	20	33572642	Intron	DEL	C	TCGA-67-3771-01A-01D-1040-01	130184	33572642	29452878	1386	156971											
RBM39	9584	broad.mit.edu	37	chr20	34295058	34295058	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacgtttgagggttaaacaTgttagagagttggaaacatt	11	3	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	34295058	C	C	34295058	3	2	194	1	0	0	0	0	1	0	0	0	13241	1464	51	5	317	5	RBM39	20	34295058	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	722416	34295058	28730462	1387	156972											
BPI	671	broad.mit.edu	37	chr20	36932541	36932541	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccacattctactgacttgCatttccccagccgactcttt	4	15	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	36932541	T	T	36932541	1	4	194	0	1	0	0	0	0	0	0	0	1499	725	25	4		4	BPI	20	36932541	5'Flank	SNP	C	TCGA-67-3771-01A-01D-1040-01	2637483	36932541	26092979	1388	156973											
RALGAPB	57148	broad.mit.edu	37	chr20	37121587	37121587	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctaggtaaaatggaccatGgaagtaatttgctatggact	11	5	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	37121587	A	A	37121587	3	1	194	1	0	0	0	0	1	0	0	0	13123	1348	47	4	207	4	RALGAPB	20	37121587	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	189046	37121587	25903933	1389	156974											
RALGAPB	57148	broad.mit.edu	37	chr20	37182833	37182833	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaactggttAaaattttagcctgcatacaa	4	5	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	37182833	G	G	37182833	1	3	194	0	1	0	0	0	0	0	0	0	13123	377	13	5		5	RALGAPB	20	37182833	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	61246	37182833	25842687	1390	156975											
SLC32A1	140679	broad.mit.edu	37	chr20	37357156	37357156	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcctgctctggcgcaaGctgctgtggcaccaagtctt	12	14	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37357156	T	T	37357156	3	4	194	1	0	0	0	0	1	0	0	0	14679	962	34	3	1458	3	SLC32A1	20	37357156	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	174323	37357156	25668364	1391	156976											
PPP1R16B	26051	broad.mit.edu	37	chr20	37546891	37546891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgttgagaatggcctccGggctccggtcagtgcctacc	13	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37546891	T	T	37546891	3	4	194	1	0	0	0	0	1	0	0	0	12467	1116	39	1	1324	1	PPP1R16B	20	37546891	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	189735	37546891	25478629	1392	156977											
CHD6	84181	broad.mit.edu	37	chr20	40118549	40118549	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttagtgatggtggagagagGggcgataatgagaaaagggc	19	2	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	40118549	A	A	40118549	3	1	194	1	0	0	0	0	1	0	0	0	3360	1232	43	4	6702	4	CHD6	20	40118549	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2571658	40118549	22906971	1393	156978											
R3HDML	140902	broad.mit.edu	37	chr20	42974026	42974027	+	Intron	DNP	CC	AT	AT													actatgccattaagtaagtgCctgcaccaaggcaaagaggg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AT	42974027	AT	AT	42974026	1	1	194	0	1	0	0	0	0	0	0	0	12997	754	26	3		3	R3HDML	20	42974026	Intron	DNP	CC	TCGA-67-3771-01A-01D-1040-01	2855477	42974026	20051494	1394	156979											
SEMG1	6406	broad.mit.edu	37	chr20	43836371	43836371	+	Frame_Shift_Del	DEL	G	-	-													ggacacaaaatccttctcaaGatcaggggaatagcccatct							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	43836371	-	-	43836371	7	5	194	1	0	1	0	1	0	0	0	0	14157	942	33	0	439	0	SEMG1	20	43836371	Frame_Shift_Del	DEL	G	TCGA-67-3771-01A-01D-1040-01	862345	43836371	19189149	1395	156980											
WFDC3	140686	broad.mit.edu	37	chr20	44417477	44417477	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaagggagacttccagaGgcaacctagaaggtgggaag	16	7	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44417477	A	A	44417477	1	1	194	0	1	0	0	0	0	0	0	0	17480	1015	35	4		4	WFDC3	20	44417477	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	581106	44417477	18608043	1396	156981											
ELMO2	63916	broad.mit.edu	37	chr20	45002126	45002126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caaagagctcttcaaaggctCggtcatgggtaaagaacatc	10	9	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	45002126	A	A	45002126	3	1	194	1	0	0	0	0	1	0	0	0	5108	884	31	3	862	3	ELMO2	20	45002126	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	584649	45002126	18023394	1397	156982											
SULF2	55959	broad.mit.edu	37	chr20	46293862	46293862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaaataaaaaatgaaagGggtcaatcacgagaggggat	11	3	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46293862	T	T	46293862	1	4	194	0	1	0	0	0	0	0	0	0	15489	1247	43	2		2	SULF2	20	46293862	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1291736	46293862	16731658	1398	156983											
SLC9A8	23315	broad.mit.edu	37	chr20	48431501	48431501	+	Intron	DEL	G	-	-													ggtgtgtgaattgatgttttGggacccttttccattatcta							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	48431501	-	-	48431501	6	5	194	0	1	1	0	1	0	0	0	0	14834	1363	47	0		0	SLC9A8	20	48431501	Intron	DEL	G	TCGA-67-3771-01A-01D-1040-01	2137639	48431501	14594019	1399	156984											
SNAI1	6615	broad.mit.edu	37	chr20	48604257	48604257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagctccgtcaggtcccGgcctttggaccctggctgtg	14	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	48604257	T	T	48604257	1	4	194	0	1	0	0	0	0	0	0	0	14940	1131	39	1		1	SNAI1	20	48604257	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	172756	48604257	14421263	1400	156985											
BCAS4	55653	broad.mit.edu	37	chr20	49458380	49458380	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgagcgggaccatggggcCttccctcaggccctgcggag	16	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	49458380	T	T	49458380	2	4	194	1	0	0	0	0	0	0	0	1	1358	668	24	4		4	BCAS4	20	49458380	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	854123	49458380	13567140	1401	156986											
TSHZ2	128553	broad.mit.edu	37	chr20	51872150	51872150	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccttgcgctcaccttcctGctccagcccaagttcaagca	7	18	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	51872150	C	C	51872150	3	2	194	1	0	0	0	0	1	0	0	0	16749	1319	46	4	2159	4	TSHZ2	20	51872150	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2413770	51872150	11153370	1402	156987											
DOK5	55816	broad.mit.edu	37	chr20	53205191	53205191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagattctgaatggatgctGggcacacagtttaatctttt	9	6	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	53205191	T	T	53205191	1	4	194	0	1	0	0	0	0	0	0	0	4740	1363	47	2		2	DOK5	20	53205191	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1333041	53205191	9820329	1403	156988											
PCK1	5105	broad.mit.edu	37	chr20	56138681	56138681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcggccgcatttcccagcGcctgcgggaagaccaacctg	13	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	56138681	T	T	56138681	3	4	194	1	0	0	0	0	1	0	0	0	11675	1087	38	3	877	3	PCK1	20	56138681	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2933490	56138681	6886839	1404	156989											
ZNF831	128611	broad.mit.edu	37	chr20	57768421	57768421	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggccagtttggccggacCccaagctggaaggaggtgcc	15	13	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	57768421	G	G	57768421	3	3	194	1	0	0	0	0	1	0	0	0	18314	623	22	4	2349	4	ZNF831	20	57768421	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1629740	57768421	5257099	1405	156990											
ZNF831	128611	broad.mit.edu	37	chr20	57769224	57769224	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaggggctcccagggaGgctacctcctccccgcccac	11	20	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	57769224	T	T	57769224	3	4	194	1	0	0	0	0	1	0	0	0	18314	991	35	2	3152	2	ZNF831	20	57769224	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	803	57769224	5256296	1406	156991											
PHACTR3	116154	broad.mit.edu	37	chr20	58318417	58318417	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatctgtgacttcctggcCcctacacaggaggggcagat	12	12	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	58318417	A	A	58318417	1	1	194	0	1	0	0	0	0	0	0	0	11906	638	22	2		2	PHACTR3	20	58318417	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	549193	58318417	4707103	1407	156992											
TAF4	6874	broad.mit.edu	37	chr20	60551524	60551524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggctccttccggtaggccCacagctggagctggggtgct	16	13	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	60551524	A	A	60551524	1	1	194	0	1	0	0	0	0	0	0	0	15645	609	21	2		2	TAF4	20	60551524	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2233107	60551524	2473996	1408	156993											
LAMA5	3911	broad.mit.edu	37	chr20	60890259	60890259	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgcgatcttcttgcttgtCtcgtctgtggtgggcagagg	15	8	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	60890259	A	A	60890259	3	1	194	1	0	0	0	0	1	0	0	0	8681	912	32	3	3303	3	LAMA5	20	60890259	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	338735	60890259	2135261	1409	156994											
C20orf166	128826	broad.mit.edu	37	chr20	61151440	61151440	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcctctgagctgccttctCtacatcgcagtggggtcagc	11	14	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	61151440	T	T	61151440	1	4	194	0	1	0	0	0	0	0	0	0	2117	928	32	4		4	C20orf166	20	61151440	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	261181	61151440	1874080	1410	156995											
SLCO4A1	28231	broad.mit.edu	37	chr20	61296210	61296210	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccaccactctgaccctcaGtctcttctccacaccccgac	4	22	4	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	61296210	C	C	61296210	1	2	194	0	1	0	0	0	0	0	0	0	14843	1044	36	4		4	SLCO4A1	20	61296210	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	144770	61296210	1729310	1411	156996											
NTSR1	4923	broad.mit.edu	37	chr20	61386225	61386225	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccaggccctgcggcacggCgtgcgcgtcctacgtacgta	14	15	0	0	rs34864360	byFrequency;by1000genomes	TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61386225	A	A	61386225	2	1	194	1	0	0	0	0	0	0	0	1	10805	755	27	3		3	NTSR1	20	61386225	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	90015	61386225	1639295	1412	156997											
COL9A3	1299	broad.mit.edu	37	chr20	61461738	61461738	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcccacaaggccctccCggagcccctggtgtccgagg	13	18	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	61461738	T	T	61461738	2	4	194	1	0	0	0	0	0	0	0	1	3741	639	23	4		4	COL9A3	20	61461738	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	75513	61461738	1563782	1413	156998											
BIRC7	79444	broad.mit.edu	37	chr20	61870965	61870965	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcctgtcctaggccaggtGagcgccccagcaccacgcgc	11	18	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	61870965	A	A	61870965	1	1	194	0	1	0	0	0	0	0	0	0	1445	1305	45	4		4	BIRC7	20	61870965	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	409227	61870965	1154555	1414	156999											
ZNF512B	57473	broad.mit.edu	37	chr20	62593891	62593891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcaggccaaggcatgccCcacgcagaggccacggcgct	13	16	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	62593891	A	A	62593891	1	1	194	0	1	0	0	0	0	0	0	0	18084	638	22	2		2	ZNF512B	20	62593891	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	722926	62593891	431629	1415	157000											
PRPF6	24148	broad.mit.edu	37	chr20	62648234	62648234	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggcctttgtccgtaatatgGagtctctgcttgtgggaaca	13	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	62648234	C	C	62648234	1	2	194	0	1	0	0	0	0	0	0	0	12680	1189	41	4		4	PRPF6	20	62648234	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	54343	62648234	377286	1416	157001											
TCEA2	6919	broad.mit.edu	37	chr20	62701011	62701011	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctggatcgtgggcctctTgcagggacccggatgtgccc	15	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	62701011	C	C	62701011	1	2	194	0	1	0	0	0	0	0	0	0	15790	1827	63	5		5	TCEA2	20	62701011	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	52777	62701011	324509	1417	157002											
TCEA2	6919	broad.mit.edu	37	chr20	62701953	62701953	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagacctgttcacctgcGgcaagtgcaggaaaaagaac	11	10	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	62701953	T	T	62701953	3	4	194	1	0	0	0	0	1	0	0	0	15790	1116	39	1	814	1	TCEA2	20	62701953	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	942	62701953	323567	1418	157003											
TPTE	7179	broad.mit.edu	37	chr21	10941761	10941761	+	Intron	SNP	G	A	A													ttgtaaccactggcacaactGtaactggtatcaatccatta							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	10941761	A	A	10941761	1	1	194	0	1	0	0	0	0	0	0	0	16554	1392	48	4		4	TPTE	21	10941761	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01		10941761	37188134	1419	157004	669	2									
TPTE	7179	broad.mit.edu	37	chr21	10941765	10941765	+	Intron	SNP	C	A	A													aaccactggcacaactgtaaCtggtatcaatccattatgat							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	10941765	A	A	10941765	1	1	194	0	1	0	0	0	0	0	0	0	16554	580	20	3		3	TPTE	21	10941765	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	4	10941765	37188130	1420	157005	669	2									
BAGE2	85319	broad.mit.edu	37	chr21	11021105	11021105	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agacagtaaattgtcaagttCaaacctgattcaaagtgaac	7	7	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	11021105	T	T	11021105	1	4	194	0	1	0	0	0	0	0	0	0	1297	841	29	4		4	BAGE2	21	11021105	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	79340	11021105	37108790	1421	157006											
LIPI	149998	broad.mit.edu	37	chr21	15558333	15558333	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttccaacaaatccactgaTatgagcccctaagctcacac	4	15	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	15558333	C	C	15558333	3	2	194	1	0	0	0	0	1	0	0	0	8898	1406	49	5	924	5	LIPI	21	15558333	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	4537228	15558333	32571562	1422	157007											
SAMSN1	64092	broad.mit.edu	37	chr21	15870686	15870686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcagtaaataaaactggGgctttgtttctaatgattat	7	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	15870686	T	T	15870686	1	4	194	0	1	0	0	0	0	0	0	0	13941	1247	43	2		2	SAMSN1	21	15870686	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	312353	15870686	32259209	1423	157008											
JAM2	58494	broad.mit.edu	37	chr21	27086965	27086965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaggatttcaagcacaCaaaatcctttataatttaaa	3	8	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	27086965	A	A	27086965	3	1	194	1	0	0	0	0	1	0	0	0	8013	478	17	3	916	3	JAM2	21	27086965	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	11216279	27086965	21042930	1424	157009											
N6AMT1	29104	broad.mit.edu	37	chr21	30257706	30257706	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcgcgtgcgcagggcgtgCgcatgcgcatgcgcatgccc	16	14	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	30257706	T	T	30257706	1	4	194	0	1	0	0	0	0	0	0	0	10208	783	27	4		4	N6AMT1	21	30257706	5'Flank	SNP	C	TCGA-67-3771-01A-01D-1040-01	3170741	30257706	17872189	1425	157010											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744334	31744334	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gactccacataggacgtctgGcagctggtgggctcccagca	13	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	31744334	C	C	31744334	3	2	194	1	0	0	0	0	1	0	0	0	8594	1195	42	4	333	4	KRTAP13-2	21	31744334	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	1486628	31744334	16385561	1426	157011											
KRTAP15-1	254950	broad.mit.edu	37	chr21	31813004	31813004	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctctggactgtgggtccaGcttctaccacccaactacct	7	15	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	31813004	A	A	31813004	3	1	194	1	0	0	0	0	1	0	0	0	8597	971	34	4	361	4	KRTAP15-1	21	31813004	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	68670	31813004	16316891	1427	157012											
RUNX1	861	broad.mit.edu	37	chr21	36231792	36231792	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgaggttctcggggcccatCcactgtgattttgatggctc	12	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	36231792	T	T	36231792	3	4	194	1	0	0	0	0	1	0	0	0	13857	855	30	4	899	4	RUNX1	21	36231792	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	4418788	36231792	11898103	1428	157013											
KCNJ6	3763	broad.mit.edu	37	chr21	39086866	39086866	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaccagggtctctgccctCttcttgggttgagagatttt	11	9	3	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	39086866	A	A	39086866	3	1	194	1	0	0	0	0	1	0	0	0	8125	912	32	3	685	3	KCNJ6	21	39086866	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	2855074	39086866	9043029	1429	157014											
ETS2	2114	broad.mit.edu	37	chr21	40194759	40194759	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccagaacttgctggggttCacgcccgaggaactgcacgc	12	14	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	40194759	T	T	40194759	2	4	194	1	0	0	0	0	0	0	0	1	5318	825	29	4		4	ETS2	21	40194759	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1107893	40194759	7935136	1430	157015											
UMODL1	89766	broad.mit.edu	37	chr21	43504190	43504190	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attaattgtatcattttctcCcagccctgaatcagtccggg	7	11	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	43504190	G	G	43504190	1	3	194	0	1	0	0	0	0	0	0	0	17106	638	22	4		4	UMODL1	21	43504190	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3309431	43504190	4625705	1431	157016											
UMODL1	89766	broad.mit.edu	37	chr21	43508578	43508578	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctatgaagtgatcagcGtccaggtgcaaggttgggct	15	7	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	43508578	C	C	43508578	3	2	194	1	0	0	0	0	1	0	0	0	17106	1145	40	4	796	4	UMODL1	21	43508578	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4388	43508578	4621317	1432	157017											
ABCG1	9619	broad.mit.edu	37	chr21	43621828	43621828	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaacagagaaagccctgcCctcaggtgtggtcagaagag	12	10	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	43621828	G	G	43621828	3	3	194	1	0	0	0	0	1	0	0	0	68	623	22	4	45	4	ABCG1	21	43621828	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	113250	43621828	4508067	1433	157018											
RSPH1	89765	broad.mit.edu	37	chr21	43902830	43902830	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccaacaggctacgagcaaaGagaaaccattcttaagtgtc	9	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	43902830	C	C	43902830	1	2	194	0	1	0	0	0	0	0	0	0	13813	957	33	4		4	RSPH1	21	43902830	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	281002	43902830	4227065	1434	157019											
C21orf29	54084	broad.mit.edu	37	chr21	46011130	46011131	+	Intron	DNP	GG	TT	TT													gccagcatctgggaaggacaGggggagcatcctggtcccta							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	TT	46011131	TT	TT	46011130	1	4	194	0	1	0	0	0	0	0	0	0	2146	1015	35	2		2	C21orf29	21	46011130	Intron	DNP	GG	TCGA-67-3771-01A-01D-1040-01	2108300	46011130	2118765	1435	157020											
KRTAP10-8	386681	broad.mit.edu	37	chr21	46032130	46032130	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccccagcacctgcactgGctcctcctggcaggtggaca	10	18	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	46032130	T	T	46032130	3	4	194	1	0	0	0	0	1	0	0	0	8586	1203	42	3	115	3	KRTAP10-8	21	46032130	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	21000	46032130	2097765	1436	157021											
KRTAP10-11	386678	broad.mit.edu	37	chr21	46066935	46066935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcctaccagcaggCctgctgcgtgcctgtctgct	9	18	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46066935	A	A	46066935	3	1	194	1	0	0	0	0	1	0	0	0	8578	739	26	3	562	3	KRTAP10-11	21	46066935	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	34805	46066935	2062960	1437	157022											
SLC19A1	6573	broad.mit.edu	37	chr21	46957674	46957674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggccgcccggcaccccggCacccacatgcctgctcccgc	11	23	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46957674	A	A	46957674	1	1	194	0	1	0	0	0	0	0	0	0	14541	725	25	3		3	SLC19A1	21	46957674	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	890739	46957674	1172221	1438	157023											
GAB4	128954	broad.mit.edu	37	chr22	17446055	17446055	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaagctcctgtttccactGacagacactcacctggtccc	6	18	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	17446055	C	C	17446055	1	2	194	0	1	0	0	0	0	0	0	0	6211	1305	45	4		4	GAB4	22	17446055	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01		17446055	33858511	1439	157024											
VPREB1	7441	broad.mit.edu	37	chr22	22599589	22599589	+	Missense_Mutation	SNP	T	G	G													cttctctggatccaaagatgTggccaggaacagggggtatt							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	22599589	G	G	22599589	3	3	194	1	0	0	0	0	1	0	0	0	17313	1696	59	5	284	5	VPREB1	22	22599589	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	5153534	22599589	28704977	1440	157025	670	2									
VPREB1	7441	broad.mit.edu	37	chr22	22599591	22599591	+	Missense_Mutation	SNP	G	C	C													tctctggatccaaagatgtgGccaggaacagggggtatttg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	22599591	C	C	22599591	3	2	194	1	0	0	0	0	1	0	0	0	17313	1203	42	4	286	4	VPREB1	22	22599591	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2	22599591	28704975	1441	157026	670	2									
ZNF280B	140883	broad.mit.edu	37	chr22	22843099	22843099	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgctgagtattcattgtatGaaaggtatctgaagggaacg	12	4	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	22843099	C	C	22843099	3	2	194	1	0	0	0	0	1	0	0	0	17941	1290	45	4	1010	4	ZNF280B	22	22843099	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	243508	22843099	28461467	1442	157027											
BCR	613	broad.mit.edu	37	chr22	23596785	23596785	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatgagaacgtagcccggGctggttgcaggctggatggt	16	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	23596785	T	T	23596785	1	4	194	0	1	0	0	0	0	0	0	0	1393	1218	42	3		3	BCR	22	23596785	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	753686	23596785	27707781	1443	157028											
SUSD2	56241	broad.mit.edu	37	chr22	24580910	24580911	+	Splice_Site	DNP	TA	GT	GT													aaaattacgcagggcagaagTaagaaggcatggatgtgcag							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	GT	24580911	GT	GT	24580910	5	3	194	1	0	0	0	0	0	0	1	0	15526	1652	57	5	802	5	SUSD2	22	24580910	Splice_Site	DNP	TA	TCGA-67-3771-01A-01D-1040-01	984125	24580910	26723656	1444	157029											
MYO18B	84700	broad.mit.edu	37	chr22	26242238	26242238	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagccccgtgctcccagatCaagctgcagatggtgagtgg	13	11	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	26242238	G	G	26242238	3	3	194	1	0	0	0	0	1	0	0	0	10160	816	29	4	3610	4	MYO18B	22	26242238	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1661328	26242238	25062328	1445	157030											
SRRD	402055	broad.mit.edu	37	chr22	26885907	26885907	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagcttttttccttttgatCctttagtttgtctcatgatt	6	7	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26885907	T	T	26885907	1	4	194	0	1	0	0	0	0	0	0	0	15285	870	30	4		4	SRRD	22	26885907	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	643669	26885907	24418659	1446	157031											
CHEK2	11200	broad.mit.edu	37	chr22	29120918	29120918	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaaattttcctcctatgaGagagtggaaaaaaaaaattc	7	6	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	29120918	C	C	29120918	1	2	194	0	1	0	0	0	0	0	0	0	3366	957	33	4		4	CHEK2	22	29120918	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	2235011	29120918	22183648	1447	157032											
HSCB	150274	broad.mit.edu	37	chr22	29142081	29142081	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaatgaacgtagagtatAtaatggcccgggtgcagtgg	14	5	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	29142081	G	G	29142081	1	3	194	0	1	0	0	0	0	0	0	0	7441	464	16	5		5	HSCB	22	29142081	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	21163	29142081	22162485	1448	157033											
AP1B1	162	broad.mit.edu	37	chr22	29745135	29745135	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaataggaagggagggtttCatggcagtatgggccacagt	16	5	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	29745135	T	T	29745135	1	4	194	0	1	0	0	0	0	0	0	0	733	841	29	4		4	AP1B1	22	29745135	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	603054	29745135	21559431	1449	157034											
ASCC2	84164	broad.mit.edu	37	chr22	30218210	30218210	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaatttcccaagactccCtgcccctatcgccctgagtc	6	17	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	30218210	A	A	30218210	1	1	194	0	1	0	0	0	0	0	0	0	1036	696	24	2		2	ASCC2	22	30218210	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	473075	30218210	21086356	1450	157035											
DEPDC5	9681	broad.mit.edu	37	chr22	32217452	32217452	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacagcactagctatcagGtgggaatgatgctcagtggt	13	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	32217452	T	T	32217452	1	4	194	0	1	0	0	0	0	0	0	0	4482	1276	44	3		3	DEPDC5	22	32217452	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1999242	32217452	19087114	1451	157036											
DEPDC5	9681	broad.mit.edu	37	chr22	32217561	32217561	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagctacaaggcagcgggcaGagggatccaactcactcctc	12	13	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	32217561	A	A	32217561	2	1	194	1	0	0	0	0	0	0	0	1	4482	933	33	4		4	DEPDC5	22	32217561	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	109	32217561	19087005	1452	157037											
TOM1	10043	broad.mit.edu	37	chr22	35741608	35741608	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccgggcagctaggcagctGaggctggggtgggaggctgc	21	9	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	35741608	C	C	35741608	1	2	194	0	1	0	0	0	0	0	0	0	16474	1305	45	4		4	TOM1	22	35741608	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3524047	35741608	15562958	1453	157038											
MCM5	4174	broad.mit.edu	37	chr22	35804479	35804479	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaaatgcgtggacttccaGaccctgaagctgcaggagct	12	11	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	35804479	T	T	35804479	3	4	194	1	0	0	0	0	1	0	0	0	9483	933	33	3	693	3	MCM5	22	35804479	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	62871	35804479	15500087	1454	157039											
CACNG2	10369	broad.mit.edu	37	chr22	37098576	37098576	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaggcagcgaaagcacCaacggtggttaaaagcattt	12	8	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37098576	T	T	37098576	3	4	194	1	0	0	0	0	1	0	0	0	2583	594	21	4	941	4	CACNG2	22	37098576	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1294097	37098576	14205990	1455	157040											
SSTR3	6753	broad.mit.edu	37	chr22	37603250	37603250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctcgccaggccgccgccGgctcgggccactgcatgtgg	16	17	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	37603250	T	T	37603250	3	4	194	1	0	0	0	0	1	0	0	0	15317	1116	39	1	667	1	SSTR3	22	37603250	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	504674	37603250	13701316	1456	157041											
RAC2	5880	broad.mit.edu	37	chr22	37637246	37637246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccctcagcatgccttgtcCccaggtgtccctgttccttg	8	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	37637246	A	A	37637246	1	1	194	0	1	0	0	0	0	0	0	0	13083	638	22	2		2	RAC2	22	37637246	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	33996	37637246	13667320	1457	157042											
SH3BP1	23616	broad.mit.edu	37	chr22	38051611	38051611	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcagagggaggagcccctGaggctatcagtggggtcccc	16	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	38051611	A	A	38051611	3	1	194	1	0	0	0	0	1	0	0	0	14357	1291	45	4	2096	4	SH3BP1	22	38051611	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	414365	38051611	13252955	1458	157043											
MGAT3	4248	broad.mit.edu	37	chr22	39884738	39884738	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcctgatccgcaccggGggctggttcgacggcacgca	16	15	0	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	39884738	T	T	39884738	2	4	194	1	0	0	0	0	0	0	0	1	9637	1219	43	2		2	MGAT3	22	39884738	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	1833127	39884738	11419828	1459	157044											
ACO2	50	broad.mit.edu	37	chr22	41916031	41916031	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtgcagagccaactgctCagttcttccctgtgatgagg	12	10	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	41916031	T	T	41916031	1	4	194	0	1	0	0	0	0	0	0	0	147	841	29	4		4	ACO2	22	41916031	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2031293	41916031	9388535	1460	157045											
SULT4A1	25830	broad.mit.edu	37	chr22	44234917	44234918	+	Intron	DNP	CC	AA	AA													agtccgtgtctccttccctcCcaggcagggctgccccgaca							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	AA	44234918	AA	AA	44234917	1	1	194	0	1	0	0	0	0	0	0	0	15501	638	22	2		2	SULT4A1	22	44234917	Intron	DNP	CC	TCGA-67-3771-01A-01D-1040-01	2318886	44234917	7069649	1461	157046											
PARVG	64098	broad.mit.edu	37	chr22	44583834	44583834	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctccagggcccacaggtaGgctctctccttcagtcccca	8	19	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44583834	A	A	44583834	1	1	194	0	1	0	0	0	0	0	0	0	11564	1015	35	4		4	PARVG	22	44583834	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	348917	44583834	6720732	1462	157047											
WNT7B	7477	broad.mit.edu	37	chr22	46326894	46326894	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agactcaactgcttctgctaGaagaggagcctgaggctccg	12	11	2	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	46326894	A	A	46326894	1	1	194	0	1	0	0	0	0	0	0	0	17522	957	33	4		4	WNT7B	22	46326894	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	1743060	46326894	4977672	1463	157048											
SBF1	6305	broad.mit.edu	37	chr22	50902690	50902690	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcgtcagcactcacaagggTgaagtgcagcctgggtctcc	13	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	50902690	A	A	50902690	1	1	194	0	1	0	0	0	0	0	0	0	13970	1711	59	5		5	SBF1	22	50902690	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	4575796	50902690	401876	1464	157049											
SLC25A6	293	broad.mit.edu	37	chrX	1508207	1508207	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcacggagacactgaagccCtggtacaggccccggatgcc	13	14	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	1508207	G	G	1508207	3	3	194	1	0	0	0	0	1	0	0	0	14627	680	24	4	383	4	SLC25A6	23	1508207	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01		1508207	153762353	1465	157050											
SLC25A6	293	broad.mit.edu	37	chrX	1508329	1508329	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggcgggttctggcgaaatCcagcgggtacacgaagcaga	15	10	1	1	rs140307739		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	1508329	G	G	1508329	3	3	194	1	0	0	0	0	1	0	0	0	14627	855	30	4	505	4	SLC25A6	23	1508329	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	122	1508329	153762231	1466	157051											
DHRSX	207063	broad.mit.edu	37	chrX	2209550	2209550	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caccaggactcaccattgttGatcaggacatggagaggaat	11	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	2209550	A	A	2209550	2	1	194	1	0	0	0	0	0	0	0	1	4539	1280	45	4		4	DHRSX	23	2209550	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	701221	2209550	153061010	1467	157052											
OFD1	8481	broad.mit.edu	37	chrX	13753126	13753126	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcttggccccaccgcccggGctgggcactaaactcgggcc	13	17	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	13753126	C	C	13753126	1	2	194	0	1	0	0	0	0	0	0	0	10933	1218	42	4		4	OFD1	23	13753126	5'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	11543576	13753126	141517434	1468	157053											
ASB9	140462	broad.mit.edu	37	chrX	15268584	15268584	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttcttgacacaggctctcTgttggttttcacaagccaaa	8	11	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	15268584	C	C	15268584	3	2	194	1	0	0	0	0	1	0	0	0	1034	1580	55	5	389	5	ASB9	23	15268584	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	1515458	15268584	140001976	1469	157054											
CA5B	11238	broad.mit.edu	37	chrX	15790764	15790764	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaggtcaggaacagtgAcaactgtagagaagtgggga	16	4	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	15790764	G	G	15790764	1	3	194	0	1	0	0	0	0	0	0	0	2546	290	10	5		5	CA5B	23	15790764	Intron	SNP	A	TCGA-67-3771-01A-01D-1040-01	522180	15790764	139479796	1470	157055											
PHKA2	5256	broad.mit.edu	37	chrX	18942678	18942678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgggtaaacggccaccCtttctttacctggaaacacc	9	13	1	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	18942678	A	A	18942678	1	1	194	0	1	0	0	0	0	0	0	0	11939	696	24	2		2	PHKA2	23	18942678	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	3151914	18942678	136327882	1471	157056											
MAGEB6	158809	broad.mit.edu	37	chrX	26212971	26212971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcattactgaagatttGgtgcaagataagtacgtggt	11	4	1	4			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	26212971	T	T	26212971	3	4	194	1	0	0	0	0	1	0	0	0	9271	1339	47	2	1010	2	MAGEB6	23	26212971	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	7270293	26212971	129057589	1472	157057											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997645	27997645	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctagctggactggatatgagGccttcaggatggtatgcact	13	8	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	27997645	C	C	27997645	1	2	194	0	1	0	0	0	0	0	0	0	4310	1218	42	4		4	DCAF8L1	23	27997645	3'UTR	SNP	G	TCGA-67-3771-01A-01D-1040-01	1784674	27997645	127272915	1473	157058											
DCAF8L1	139425	broad.mit.edu	37	chrX	27997961	27997962	+	Frame_Shift_Del	DEL	CG	-	-													tgctgatctaggccactggtCgccaacacaggtaggtaagg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	27997962	-	-	27997961	7	5	194	1	0	1	0	1	0	0	0	0	4310	871	31	0	315	0	DCAF8L1	23	27997961	Frame_Shift_Del	DEL	CG	TCGA-67-3771-01A-01D-1040-01	316	27997961	127272599	1474	157059											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29973189	29973189	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccaaattttccattcactCattttgatgcactcttttat	3	10	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	29973189	A	A	29973189	1	1	194	0	1	0	0	0	0	0	0	0	7731	841	29	3		3	IL1RAPL1	23	29973189	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1975228	29973189	125297371	1475	157060											
FTHL17	53940	broad.mit.edu	37	chrX	31089993	31089993	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggaggtgtagagctccagCgtgatgtggctgttgatggc	17	6	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	31089993	T	T	31089993	2	4	194	1	0	0	0	0	0	0	0	1	6143	755	27	4		4	FTHL17	23	31089993	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	1116804	31089993	124180567	1476	157061											
CXorf22	170063	broad.mit.edu	37	chrX	36007664	36007664	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatatctagaattaactgtAaaacccaagactttcatgca	4	9	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	36007664	G	G	36007664	1	3	194	0	1	0	0	0	0	0	0	0	4135	377	13	5		5	CXorf22	23	36007664	3'UTR	SNP	A	TCGA-67-3771-01A-01D-1040-01	4917671	36007664	119262896	1477	157062											
SYTL5	94122	broad.mit.edu	37	chrX	37953526	37953526	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagtcagtataatttttttCtcatttttactttgtgggaa	6	5	2	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	37953526	G	G	37953526	1	3	194	0	1	0	0	0	0	0	0	0	15605	928	32	4		4	SYTL5	23	37953526	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1945862	37953526	117317034	1478	157063											
DUSP21	63904	broad.mit.edu	37	chrX	44703735	44703735	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgcctcactgtgccttgcGtacctcatgaaataccactc	6	16	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	44703735	A	A	44703735	2	1	194	1	0	0	0	0	0	0	0	1	4860	1132	40	4		4	DUSP21	23	44703735	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	6750209	44703735	110566825	1479	157064											
SSX3	10214	broad.mit.edu	37	chrX	48209102	48209102	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcgcttgagcacctttcaTgtcatcaggccttctagatt	7	11	4	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	48209102	A	A	48209102	1	1	194	0	1	0	0	0	0	0	0	0	15323	1479	51	5		5	SSX3	23	48209102	Intron	SNP	T	TCGA-67-3771-01A-01D-1040-01	3505367	48209102	107061458	1480	157065											
PQBP1	10084	broad.mit.edu	37	chrX	48758546	48758546	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accaggttggagggcctaccAccaagctggtacaaggtgtt	13	10	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	48758546	C	C	48758546	2	2	194	1	0	0	0	0	0	0	0	1	12518	146	6	5		5	PQBP1	23	48758546	Silent	SNP	A	TCGA-67-3771-01A-01D-1040-01	549444	48758546	106512014	1481	157066											
SSX7	280658	broad.mit.edu	37	chrX	52686348	52686348	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtccctgggagccggCtggagacaggtggtcttgta	17	9	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	52686348	A	A	52686348	1	1	194	0	1	0	0	0	0	0	0	0	15327	812	28	3		3	SSX7	23	52686348	5'Flank	SNP	C	TCGA-67-3771-01A-01D-1040-01	3927802	52686348	102584212	1482	157067											
PAGE2B	389860	broad.mit.edu	37	chrX	55102690	55102690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcatctcatgaaggaaaCgttggttcaggaatattata	10	5	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	55102690	A	A	55102690	1	1	194	0	1	0	0	0	0	0	0	0	11485	551	19	3		3	PAGE2B	23	55102690	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	2416342	55102690	100167870	1483	157068											
PHKA1	5255	broad.mit.edu	37	chrX	71800926	71800926	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccttggagaggtaggtcaTggtgccaaacctgccactgg	14	10	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	71800926	C	C	71800926	3	2	194	1	0	0	0	0	1	0	0	0	11938	1464	51	5	77	5	PHKA1	23	71800926	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	16698236	71800926	83469634	1484	157069											
KLHL4	56062	broad.mit.edu	37	chrX	86868907	86868907	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acacaacactctgaagacatGaatgccaccagatctgaaga	7	11	2	6			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	86868907	C	C	86868907	3	2	194	1	0	0	0	0	1	0	0	0	8462	1290	45	4	456	4	KLHL4	23	86868907	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	15067981	86868907	68401653	1485	157070											
KLHL4	56062	broad.mit.edu	37	chrX	86921526	86921526	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtgttgtagtggtgaagCtaccctaaagctatctatct	9	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	86921526	A	A	86921526	3	1	194	1	0	0	0	0	1	0	0	0	8462	796	28	3	2191	3	KLHL4	23	86921526	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	52619	86921526	68349034	1486	157071											
NAP1L3	4675	broad.mit.edu	37	chrX	92927019	92927019	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaccactcttggctggaTttcaatttctccagtagcag	9	10	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	92927019	C	C	92927019	3	2	194	1	0	0	0	0	1	0	0	0	10252	1493	52	5	239	5	NAP1L3	23	92927019	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	6005493	92927019	62343541	1487	157072											
NOX1	27035	broad.mit.edu	37	chrX	100118019	100118019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaagctccatgaaaacaggCcaagaacagtgcctgacaaa	8	10	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	100118019	A	A	100118019	1	1	194	0	1	0	0	0	0	0	0	0	10651	754	26	3		3	NOX1	23	100118019	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	7191000	100118019	55152541	1488	157073											
MCART6	401612	broad.mit.edu	37	chrX	103349497	103349497	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgctggggaagcgagcTtgcttgcgaccatcctggag	16	9	0	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	103349497	G	G	103349497	3	3	194	1	0	0	0	0	1	0	0	0	9464	1606	56	5	483	5	MCART6	23	103349497	Missense_Mutation	SNP	T	TCGA-67-3771-01A-01D-1040-01	3231478	103349497	51921063	1489	157074											
TBC1D8B	54885	broad.mit.edu	37	chrX	106084040	106084040	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcacccagcctttcagagtGatactggcatatctgctctg	9	12	3	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	106084040	A	A	106084040	3	1	194	1	0	0	0	0	1	0	0	0	15748	1290	45	4	1683	4	TBC1D8B	23	106084040	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	2734543	106084040	49186520	1490	157075											
IRS4	8471	broad.mit.edu	37	chrX	107977860	107977861	+	Frame_Shift_Ins	INS	-	A	A													atctccaggtccctggccacINScacctgagccatgcccacct							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	107977861	A	A	107977860	7	5	194	1	0	1	1	0	0	0	0	0	7912	507	18	0	2062	0	IRS4	23	107977860	Frame_Shift_Ins	INS	-	TCGA-67-3771-01A-01D-1040-01	1893820	107977860	47292700	1491	157076											
ODZ1	10178	broad.mit.edu	37	chrX	123556156	123556156	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtttggatcaattttgcaGtcacagtcagtgggggcacc	12	9	3	0			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	123556156	A	A	123556156	2	1	194	1	0	0	0	0	0	0	0	1	10929	1020	36	4		4	ODZ1	23	123556156	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	15578296	123556156	31714404	1492	157077											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298590	125298590	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agccacaaagagcttcatctCcggccagttgtagcagtggg	12	11	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298590	A	A	125298590	4	1	194	1	0	0	0	0	0	1	0	0	4298	864	30	3	77	3	DCAF12L2	23	125298590	Nonsense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	1742434	125298590	29971970	1493	157078											
ZDHHC9	51114	broad.mit.edu	37	chrX	128940465	128940465	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggtgttctgtgggggcctGagaaggaaaagatatgagat	16	4	1	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	128940465	A	A	128940465	1	1	194	0	1	0	0	0	0	0	0	0	17748	1305	45	4		4	ZDHHC9	23	128940465	Intron	SNP	G	TCGA-67-3771-01A-01D-1040-01	3641875	128940465	26330095	1494	157079											
IGSF1	3547	broad.mit.edu	37	chrX	130409888	130409888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattactctccctaacccCttctccaatgatctccatcc	3	17	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	130409888	A	A	130409888	1	1	194	0	1	0	0	0	0	0	0	0	7666	696	24	2		2	IGSF1	23	130409888	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	1469423	130409888	24860672	1495	157080											
IGSF1	3547	broad.mit.edu	37	chrX	130420064	130420064	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatatgagcagtccaaccCtctccctcccataacatgtc	5	15	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	130420064	A	A	130420064	1	1	194	0	1	0	0	0	0	0	0	0	7666	696	24	2		2	IGSF1	23	130420064	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	10176	130420064	24850496	1496	157081											
FRMD7	90167	broad.mit.edu	37	chrX	131234537	131234537	+	Intron	DEL	T	-	-													tgttgcaagggtgcacatagTttttcatttttcaatcaggg							TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	-	131234537	-	-	131234537	6	5	194	0	1	1	0	1	0	0	0	0	6115	1740	60	0		0	FRMD7	23	131234537	Intron	DEL	T	TCGA-67-3771-01A-01D-1040-01	814473	131234537	24036023	1497	157082											
FHL1	2273	broad.mit.edu	37	chrX	135288688	135288688	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgctgcctgaaatgctttGacaagttctgtgccaacacc	8	12	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	C	135288688	C	C	135288688	3	2	194	1	0	0	0	0	1	0	0	0	5935	1290	45	4	216	4	FHL1	23	135288688	Missense_Mutation	SNP	G	TCGA-67-3771-01A-01D-1040-01	4054151	135288688	19981872	1498	157083											
GPR112	139378	broad.mit.edu	37	chrX	135431523	135431523	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacttcctggaacataccCacagctgaaggttctcagtt	8	11	1	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	135431523	T	T	135431523	2	4	194	1	0	0	0	0	0	0	0	1	6694	581	21	4		4	GPR112	23	135431523	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	142835	135431523	19839037	1499	157084											
ZIC3	7547	broad.mit.edu	37	chrX	136649681	136649681	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttcagcaccatgcatgaGctggtgacacatgtcaccat	8	13	2	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	136649681	A	A	136649681	2	1	194	1	0	0	0	0	0	0	0	1	17806	962	34	4		4	ZIC3	23	136649681	Silent	SNP	G	TCGA-67-3771-01A-01D-1040-01	1218158	136649681	18620879	1500	157085											
MAGEC1	9947	broad.mit.edu	37	chrX	140995104	140995104	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctcctccactccatcCagtcttccccagagtttccc	4	20	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	140995104	A	A	140995104	2	1	194	1	0	0	0	0	0	0	0	1	9272	581	21	2		2	MAGEC1	23	140995104	Silent	SNP	C	TCGA-67-3771-01A-01D-1040-01	4345423	140995104	14275456	1501	157086											
FMR1NB	158521	broad.mit.edu	37	chrX	147106529	147106529	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacgagtagcaagagacCaaaggtaattgacaatagga	13	5	0	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	147106529	A	A	147106529	1	1	194	0	1	0	0	0	0	0	0	0	6019	609	21	2		2	FMR1NB	23	147106529	3'UTR	SNP	C	TCGA-67-3771-01A-01D-1040-01	6111425	147106529	8164031	1502	157087											
AFF2	2334	broad.mit.edu	37	chrX	148054827	148054827	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtttataagcatttctggCctctgttcaccagatgcccc	7	12	3	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	G	148054827	G	G	148054827	1	3	194	0	1	0	0	0	0	0	0	0	357	754	26	4		4	AFF2	23	148054827	Intron	SNP	C	TCGA-67-3771-01A-01D-1040-01	948298	148054827	7215733	1503	157088											
MAGEA11	4110	broad.mit.edu	37	chrX	148797297	148797297	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggccaacctggaggacaggAgtcccaggagaacccagagg	15	11	0	2			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	148797297	T	T	148797297	3	4	194	1	0	0	0	0	1	0	0	0	9253	304	11	5	249	5	MAGEA11	23	148797297	Missense_Mutation	SNP	A	TCGA-67-3771-01A-01D-1040-01	742470	148797297	6473263	1504	157089											
CD99L2	83692	broad.mit.edu	37	chrX	149999767	149999767	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatcaaagtccccagatcCtaaaaattaaaaaaaaaaat	2	8	2	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	149999767	A	A	149999767	5	1	194	1	0	0	0	0	0	0	1	0	3081	695	24	2	761	2	CD99L2	23	149999767	Splice_Site	SNP	C	TCGA-67-3771-01A-01D-1040-01	1202470	149999767	5270793	1505	157090											
CNGA2	1260	broad.mit.edu	37	chrX	150912332	150912332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccacactcaagaaagtgCgcatcttccatgattgtgag	9	10	2	3			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	A	150912332	A	A	150912332	3	1	194	1	0	0	0	0	1	0	0	0	3629	768	27	3	1379	3	CNGA2	23	150912332	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	912565	150912332	4358228	1506	157091											
F8	2157	broad.mit.edu	37	chrX	154133184	154133184	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaaagtaagttttggtttCattaggcttgacaaagtttt	8	5	1	1			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01									Somatic	Phase_I	Capture				Illumina GAIIx	T	154133184	T	T	154133184	3	4	194	1	0	0	0	0	1	0	0	0	5393	835	29	4	1639	4	F8	23	154133184	Missense_Mutation	SNP	C	TCGA-67-3771-01A-01D-1040-01	3220852	154133184	1137376	1507	157092											
USP48	84196	broad.mit.edu	37	chr1	22013814	22013814	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcccatgattcaactactGatattgctataagacacaaa	6	9	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22013814	A	A	22013814	1	1	195	0	1	0	0	0	0	0	0	0	17206	1305	45	4		4	USP48	1	22013814	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08		22013814	227236807	1	157093											
SFRS4	6429	broad.mit.edu	37	chr1	29475178	29475178	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gttcccgctcctttgacacgGagcgggatggagatctggac	14	11	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29475178	C	C	29475178	3	2	195	1	0	0	0	0	1	0	0	0	14292	1174	41	4	259	4	SFRS4	1	29475178	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	7461364	29475178	219775443	2	157094											
ZMYM4	9202	broad.mit.edu	37	chr1	35879694	35879694	+	Intron	DEL	T	-	-													acttcctaatggtagggtgaTtttttttttattgttttcat							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35879694	-	-	35879694	6	5	195	0	1	1	0	1	0	0	0	0	17828	1508	52	0		0	ZMYM4	1	35879694	Intron	DEL	T	TCGA-67-3772-01A-01W-0928-08	6404516	35879694	213370927	3	157095											
TOE1	114034	broad.mit.edu	37	chr1	45808791	45808791	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgggaccacagtgtcctcAgtctcacgatattgacctta	8	13	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45808791	C	C	45808791	3	2	195	1	0	0	0	0	1	0	0	0	16472	188	7	5	980	5	TOE1	1	45808791	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08	9929097	45808791	203441830	4	157096											
IFI44L	10964	broad.mit.edu	37	chr1	79101124	79101124	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaaggagcaggactgtgcAtggatgacattccccacatc	11	11	0	2	rs149877350		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79101124	T	T	79101124	3	4	195	1	0	0	0	0	1	0	0	0	7588	217	8	5	840	5	IFI44L	1	79101124	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08	33292333	79101124	170149497	5	157097											
RAG1AP1	55974	broad.mit.edu	37	chr1	155121197	155121197	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagagaagaagggaaaaGctgatgctggaaaggagggg	17	3	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155121197	A	A	155121197	1	1	195	0	1	0	0	0	0	0	0	0	13112	986	34	4		4	RAG1AP1	1	155121197	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	76020073	155121197	94129424	6	157098											
CD1A	909	broad.mit.edu	37	chr1	158225083	158225083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaacattattccgtataCgcaccattcggtcatttgag	8	9	1	1	rs116290813	byFrequency;by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158225083	A	A	158225083	3	1	195	1	0	0	0	0	1	0	0	0	3004	536	19	3	274	3	CD1A	1	158225083	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	3103886	158225083	91025538	7	157099											
CD1B	910	broad.mit.edu	37	chr1	158300570	158300570	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgagactcttcccagttcGgtggactagactcacatttc	8	12	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158300570	A	A	158300570	1	1	195	0	1	0	0	0	0	0	0	0	3005	1131	39	4		4	CD1B	1	158300570	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	75487	158300570	90950051	8	157100											
LAMC1	3915	broad.mit.edu	37	chr1	183100595	183100598	+	Intron	DEL	TATT	-	-													tgtgtgtgtgtgtgtgtgtgTattgtcttatcccataaccc					rs66522331		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	183100598	-	-	183100595	6	5	195	0	1	1	0	1	0	0	0	0	8686	1653	57	0		0	LAMC1	1	183100595	Intron	DEL	TATT	TCGA-67-3772-01A-01W-0928-08	24800025	183100595	66150026	9	157101											
LAMB3	3914	broad.mit.edu	37	chr1	209797336	209797336	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agatccagctgcaggccctgGagagttcgcctgagaaggga	15	10	0	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209797336	C	C	209797336	2	2	195	1	0	0	0	0	0	0	0	1	8684	1161	41	4		4	LAMB3	1	209797336	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	26696741	209797336	39453285	10	157102											
KCNH1	3756	broad.mit.edu	37	chr1	211280627	211280627	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttttttgcatcacttctgCcctgtgatagccagacagct	8	12	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211280627	T	T	211280627	3	4	195	1	0	0	0	0	1	0	0	0	8101	739	26	4	2837	4	KCNH1	1	211280627	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	1483291	211280627	37969994	11	157103											
TLR5	7100	broad.mit.edu	37	chr1	223283837	223283837	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcaacggaatgttattgTctttcttcttttctttttct	5	7	5	0	rs5744177	byFrequency;by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223283837	C	C	223283837	3	2	195	1	0	0	0	0	1	0	0	0	16077	1667	58	5	43	5	TLR5	1	223283837	Missense_Mutation	SNP	T	TCGA-67-3772-01A-01W-0928-08	12003210	223283837	25966784	12	157104											
RYR2	6262	broad.mit.edu	37	chr1	237777703	237777703	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagcacctccctcaggCcacggatgcagttttcctcc	8	18	2	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237777703	T	T	237777703	3	4	195	1	0	0	0	0	1	0	0	0	13880	739	26	4	5421	4	RYR2	1	237777703	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	14493866	237777703	11472918	13	157105											
NLRP3	114548	broad.mit.edu	37	chr1	247597626	247597626	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccagcgaggcgtgctgcGcactctggcttcagtgaggc	15	13	2	1	rs112083888		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247597626	A	A	247597626	1	1	195	0	1	0	0	0	0	0	0	0	10573	1102	38	4		4	NLRP3	1	247597626	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	9819923	247597626	1652995	14	157106											
IAH1	285148	broad.mit.edu	37	chr2	9616223	9616223	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggaaaatgtcttagggatCcgtcttatggatgaaggata	12	4	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9616223	A	A	9616223	1	1	195	0	1	0	0	0	0	0	0	0	7541	870	30	3		3	IAH1	2	9616223	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08		9616223	233583150	15	157107											
ATP6V1C2	245973	broad.mit.edu	37	chr2	10866620	10866620	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctctgacgtttttatgatCtgtctaggtggggaccttgg	13	8	3	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10866620	G	G	10866620	1	3	195	0	1	0	0	0	0	0	0	0	1185	928	32	4		4	ATP6V1C2	2	10866620	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	1250397	10866620	232332753	16	157108											
SLC8A1	6546	broad.mit.edu	37	chr2	40366566	40366566	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actgatgttccaagtgcgacGaacacgactgcagtcacaga	10	11	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40366566	C	C	40366566	3	2	195	1	0	0	0	0	1	0	0	0	14820	1049	37	4	409	4	SLC8A1	2	40366566	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	29499946	40366566	202832807	17	157109											
PKP4	8502	broad.mit.edu	37	chr2	159499085	159499085	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaatgcttgtggtgcccttCgaaacctcgtttttggcaag	11	9	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159499085	T	T	159499085	4	4	195	1	0	0	0	0	0	1	0	0	12082	876	31	4	1821	4	PKP4	2	159499085	Nonsense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	119132519	159499085	83700288	18	157110											
TTN	7273	broad.mit.edu	37	chr2	179535845	179535845	+	Frame_Shift_Del	DEL	A	-	-													ggtggctcttttcgaggaacAactttagtgggcggtttttt							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179535845	-	-	179535845	7	5	195	1	0	1	0	1	0	0	0	0	16861	117	5	0	69256	0	TTN	2	179535845	Frame_Shift_Del	DEL	A	TCGA-67-3772-01A-01W-0928-08	20036760	179535845	63663528	19	157111											
SPAG16	79582	broad.mit.edu	37	chr2	214878840	214878840	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttcccagcttttgataAgtctgattactctcggtcat	6	9	3	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214878840	T	T	214878840	1	4	195	0	1	0	0	0	0	0	0	0	15094	87	3	5		5	SPAG16	2	214878840	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	35342995	214878840	28320533	20	157112											
XRCC5	7520	broad.mit.edu	37	chr2	216983788	216983788	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagaagtttgagaagaggCatattgaaatattcactgac	10	4	1	5			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216983788	T	T	216983788	3	4	195	1	0	0	0	0	1	0	0	0	17583	710	25	4	409	4	XRCC5	2	216983788	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	2104948	216983788	26215585	21	157113											
IQCA1	79781	broad.mit.edu	37	chr2	237317149	237317149	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtccagcttcttggccaCggtgcctctgttcacctgga	10	15	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237317149	T	T	237317149	1	4	195	0	1	0	0	0	0	0	0	0	7872	551	19	4		4	IQCA1	2	237317149	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	20333361	237317149	5882224	22	157114											
IQSEC1	9922	broad.mit.edu	37	chr3	12977661	12977661	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagggtgacatcactgtaCgaggccgtcatctcgtccag	11	12	3	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12977661	T	T	12977661	2	4	195	1	0	0	0	0	0	0	0	1	7887	523	19	4		4	IQSEC1	3	12977661	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08		12977661	185044769	23	157115											
ZNF860	344787	broad.mit.edu	37	chr3	32031055	32031055	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggattaagctttcattcgCatcttcctgaactccacata	5	11	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32031055	T	T	32031055	3	4	195	1	0	0	0	0	1	0	0	0	18323	710	25	4	486	4	ZNF860	3	32031055	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	19053394	32031055	165991375	24	157116											
MAP4	4134	broad.mit.edu	37	chr3	47958078	47958078	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgccacctctatttctgaGagtaataccaaatccttggc	7	11	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47958078	C	C	47958078	2	2	195	1	0	0	0	0	0	0	0	1	9350	929	33	4		4	MAP4	3	47958078	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	15927023	47958078	150064352	25	157117											
COL7A1	1294	broad.mit.edu	37	chr3	48613128	48613128	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgccgttcgggcacaggcagGaagctaccagagctctcatc	12	14	1	1	rs141290741	byFrequency;by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48613128	A	A	48613128	2	1	195	1	0	0	0	0	0	0	0	1	3736	1165	41	4		4	COL7A1	3	48613128	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	655050	48613128	149409302	26	157118											
USP19	10869	broad.mit.edu	37	chr3	49156587	49156587	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgccagacatcttgagccGcttggtcgacagccagagtg	12	14	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49156587	A	A	49156587	1	1	195	0	1	0	0	0	0	0	0	0	17176	1102	38	4		4	USP19	3	49156587	5'UTR	SNP	G	TCGA-67-3772-01A-01W-0928-08	543459	49156587	148865843	27	157119											
USP4	7375	broad.mit.edu	37	chr3	49321796	49321796	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttagctatataaagaagTgacacatccaaatacaaagg	9	6	0	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49321796	G	G	49321796	1	3	195	0	1	0	0	0	0	0	0	0	17198	1711	59	5		5	USP4	3	49321796	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	165209	49321796	148700634	28	157120											
UBA7	7318	broad.mit.edu	37	chr3	49846857	49846860	+	Frame_Shift_Del	DEL	TGTT	-	-													actccaagggctggggacacTgtttgggacctgaccagaag							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49846860	-	-	49846857	7	5	195	1	0	1	0	1	0	0	0	0	16959	1580	55	0	941	0	UBA7	3	49846857	Frame_Shift_Del	DEL	TGTT	TCGA-67-3772-01A-01W-0928-08	525061	49846857	148175573	29	157121											
TWF2	11344	broad.mit.edu	37	chr3	52269072	52269072	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcacaaccttgatgagccGcacagagccagcccgtgcct	9	15	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52269072	A	A	52269072	3	1	195	1	0	0	0	0	1	0	0	0	16908	1086	38	4	1005	4	TWF2	3	52269072	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	2422215	52269072	145753358	30	157122											
BOC	91653	broad.mit.edu	37	chr3	112998717	112998717	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctctgaacatgctgggggaGagcgagcccagcgccccctc	14	15	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112998717	A	A	112998717	2	1	195	1	0	0	0	0	0	0	0	1	1487	933	33	4		4	BOC	3	112998717	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	60729645	112998717	85023713	31	157123											
PLA1A	51365	broad.mit.edu	37	chr3	119328403	119328403	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggacagctcttcggagGccagctgggacagatcacag	16	10	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119328403	A	A	119328403	3	1	195	1	0	0	0	0	1	0	0	0	12083	1203	42	4	556	4	PLA1A	3	119328403	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	6329686	119328403	78694027	32	157124											
PFN2	5217	broad.mit.edu	37	chr3	149684345	149684346	+	Frame_Shift_Ins	INS	-	GACA	GACA													tcaatccgcctccatggaccINSccttcttttcccattacaaa							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	GACA	149684346	GACA	GACA	149684345	7	5	195	1	0	1	1	0	0	0	0	0	11863	610	22	0	174	0	PFN2	3	149684345	Frame_Shift_Ins	INS	-	TCGA-67-3772-01A-01W-0928-08	30355942	149684345	48338085	33	157125											
TMEM33	55161	broad.mit.edu	37	chr4	41956080	41956080	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcaaagaaaactattttgtCttgcaggaccttatttaatg	6	7	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41956080	A	A	41956080	1	1	195	0	1	0	0	0	0	0	0	0	16279	928	32	3		3	TMEM33	4	41956080	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08		41956080	149198196	34	157126											
ADAMTS3	9508	broad.mit.edu	37	chr4	73179338	73179338	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaatactaataacataatAttgaagtattttctggtctc	5	6	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73179338	G	G	73179338	1	3	195	0	1	0	0	0	0	0	0	0	267	464	16	5		5	ADAMTS3	4	73179338	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	31223258	73179338	117974938	35	157127											
CCDC158	339965	broad.mit.edu	37	chr4	77246968	77246968	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttacagttcagcagtgtaGgaaatcaattaatcacgtca	7	8	4	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77246968	A	A	77246968	1	1	195	0	1	0	0	0	0	0	0	0	2817	1015	35	4		4	CCDC158	4	77246968	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	4067630	77246968	113907308	36	157128											
CLGN	1047	broad.mit.edu	37	chr4	141317175	141317175	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctcaagtctcagatcagtCatataaactagtaacaaaaa	4	9	4	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141317175	G	G	141317175	1	3	195	0	1	0	0	0	0	0	0	0	3556	841	29	4		4	CLGN	4	141317175	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	64070207	141317175	49837101	37	157129											
JMY	133746	broad.mit.edu	37	chr5	78602256	78602256	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgcactcggattgaagatgAatatagaacccatcacacag	9	10	1	4			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78602256	C	C	78602256	3	2	195	1	0	0	0	0	1	0	0	0	8027	246	9	5	1966	5	JMY	5	78602256	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08		78602256	102313004	38	157130											
GEMIN5	25929	broad.mit.edu	37	chr5	154270922	154270922	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcggatcatttctgccaAggtctcttggacttcagcaa	9	10	4	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154270922	G	G	154270922	2	3	195	1	0	0	0	0	0	0	0	1	6395	69	3	5		5	GEMIN5	5	154270922	Silent	SNP	A	TCGA-67-3772-01A-01W-0928-08	75668666	154270922	26644338	39	157131											
CAP2	10486	broad.mit.edu	37	chr6	17543064	17543064	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttgtatttgtcttaattCtaggagtaccaagaggacag	9	5	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17543064	T	T	17543064	1	4	195	0	1	0	0	0	0	0	0	0	2646	928	32	4		4	CAP2	6	17543064	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08		17543064	153572003	40	157132											
PRSS16	10279	broad.mit.edu	37	chr6	27215709	27215709	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cattcagcagtttcaggagaGctctgcccagggcctgggcc	13	13	3	1	rs114674760	byFrequency;by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27215709	C	C	27215709	3	2	195	1	0	0	0	0	1	0	0	0	12722	971	34	4	125	4	PRSS16	6	27215709	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	9672645	27215709	143899358	41	157133											
NCR3	259197	broad.mit.edu	37	chr6	31557857	31557858	+	Frame_Shift_Del	DEL	CA	-	-													aggaaggcagaggatccttcCagggtacgaatctcaggggg							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31557858	-	-	31557857	7	5	195	1	0	1	0	1	0	0	0	0	10334	581	21	0	650	0	NCR3	6	31557857	Frame_Shift_Del	DEL	CA	TCGA-67-3772-01A-01W-0928-08	4342148	31557857	139557210	42	157134											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34826855	34826855	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagcctcgtagattcagagCtatctccttcagaggatcgg	10	11	3	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34826855	T	T	34826855	2	4	195	1	0	0	0	0	0	0	0	1	17094	796	28	4		4	UHRF1BP1	6	34826855	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08	3268998	34826855	136288212	43	157135											
DNAH8	1769	broad.mit.edu	37	chr6	38875967	38875967	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgcttagtttgccttctCtgattagaaaatgatcttag	9	6	2	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38875967	T	T	38875967	1	4	195	0	1	0	0	0	0	0	0	0	4647	928	32	4		4	DNAH8	6	38875967	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	4049112	38875967	132239100	44	157136											
PRIM2	5558	broad.mit.edu	37	chr6	57398118	57398119	+	Intron	INS	-	T	T													cttaacttaaaactctactgINSttttttcttgtagctttcta					rs147643173		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57398119	T	T	57398118	6	5	195	0	1	1	1	0	0	0	0	0	12597	1392	48	0		0	PRIM2	6	57398118	Intron	INS	-	TCGA-67-3772-01A-01W-0928-08	18522151	57398118	113716949	45	157137											
SNAP91	9892	broad.mit.edu	37	chr6	84311439	84311439	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccttagctttatgtgtcTtctacaccatttgcaattaa	4	9	2	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84311439	G	G	84311439	1	3	195	0	1	0	0	0	0	0	0	0	14947	1624	56	5		5	SNAP91	6	84311439	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	26913321	84311439	86803628	46	157138											
THEMIS	387357	broad.mit.edu	37	chr6	128134143	128134143	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgggggatgtgaggctgagCtttcatatctccgcatcatg	14	8	3	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128134143	G	G	128134143	3	3	195	1	0	0	0	0	1	0	0	0	15983	797	28	4	415	4	THEMIS	6	128134143	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	43822704	128134143	42980924	47	157139											
SAMD3	154075	broad.mit.edu	37	chr6	130465801	130465801	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggacactcaatcctaAatacatgaaaggcagctact	6	10	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130465801	C	C	130465801	3	2	195	1	0	0	0	0	1	0	0	0	13931	14	1	5	139	5	SAMD3	6	130465801	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08	2331658	130465801	40649266	48	157140											
FUCA2	2519	broad.mit.edu	37	chr6	143823616	143823616	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagatgtcctgggttataaCgatcactgcaggtatagaag	11	6	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143823616	T	T	143823616	3	4	195	1	0	0	0	0	1	0	0	0	6155	536	19	4	580	4	FUCA2	6	143823616	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	13357815	143823616	27291451	49	157141											
GRM1	2911	broad.mit.edu	37	chr6	146492917	146492917	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgaggaggtggtgtcattTgtgaagaagaatgttctaat	14	3	2	4			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146492917	C	C	146492917	1	2	195	0	1	0	0	0	0	0	0	0	6862	1827	63	5		5	GRM1	6	146492917	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	2669301	146492917	24622150	50	157142											
LPA	4018	broad.mit.edu	37	chr6	161056033	161056033	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggaggcttcccccaacatGgcagaactccggcaacactc	9	16	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161056033	C	C	161056033	1	2	195	0	1	0	0	0	0	0	0	0	8990	1363	47	4		4	LPA	6	161056033	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	14563116	161056033	10059034	51	157143											
CARD11	84433	broad.mit.edu	37	chr7	2987387	2987387	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtcctcttcatccttcagCgtctccatgtagtcatccat	6	15	5	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2987387	T	T	2987387	2	4	195	1	0	0	0	0	0	0	0	1	2671	755	27	4		4	CARD11	7	2987387	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08		2987387	156151276	52	157144											
PMS2	5395	broad.mit.edu	37	chr7	6045634	6045634	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggactgacttccgatcaaTaggtttgatggccttagcag	11	8	1	2	rs63750123	byFrequency;by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6045634	C	C	6045634	3	2	195	1	0	0	0	0	1	0	0	0	12238	1406	49	5	2592	5	PMS2	7	6045634	Missense_Mutation	SNP	T	TCGA-67-3772-01A-01W-0928-08	3058247	6045634	153093029	53	157145											
HDAC9	9734	broad.mit.edu	37	chr7	18617755	18617755	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagctgcagggaactgtgGgtattttatgattttggagc	14	5	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18617755	A	A	18617755	1	1	195	0	1	0	0	0	0	0	0	0	7081	1247	43	4		4	HDAC9	7	18617755	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	12572121	18617755	140520908	54	157146											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	195	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-67-3772-01A-01W-0928-08	36641760	55259515	103879148	55	157147											
DOCK4	9732	broad.mit.edu	37	chr7	111400450	111400450	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacagagccaaaaaacatgAcactggcagtaactgaccac	8	11	0	4			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111400450	T	T	111400450	1	4	195	0	1	0	0	0	0	0	0	0	4729	290	10	5		5	DOCK4	7	111400450	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	56140935	111400450	47738213	56	157148											
FLNC	2318	broad.mit.edu	37	chr7	128480629	128480629	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggagccagtgaaggtgcGggaggctggggatggtgtgt	22	4	0	2	rs34932223		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128480629	A	A	128480629	3	1	195	1	0	0	0	0	1	0	0	0	5993	1116	39	4	1615	4	FLNC	7	128480629	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	17080179	128480629	30658034	57	157149											
PRSS1	5644	broad.mit.edu	37	chr7	142459538	142459538	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctccagagctgtccatgAgcagagagcttgaggaacct	12	11	0	4			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142459538	T	T	142459538	1	4	195	0	1	0	0	0	0	0	0	0	12720	319	11	5		5	PRSS1	7	142459538	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	13978909	142459538	16679125	58	157150											
KCNH2	3757	broad.mit.edu	37	chr7	150648456	150648456	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagggcctcactctggccCggctagcagcctcagtttcc	10	17	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150648456	T	T	150648456	1	4	195	0	1	0	0	0	0	0	0	0	8102	667	23	4		4	KCNH2	7	150648456	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	8188918	150648456	8490207	59	157151											
PPP2CB	5516	broad.mit.edu	37	chr8	30655229	30655229	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtaatttgtcggctttcGtgatttcctctcaatattgt	9	7	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30655229	A	A	30655229	2	1	195	1	0	0	0	0	0	0	0	1	12482	1136	40	4		4	PPP2CB	8	30655229	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08		30655229	115708793	60	157152											
POTEA	340441	broad.mit.edu	37	chr8	43197329	43197329	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtattatttatcttacaGgtcaaaagccaaatacattc	5	8	2	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43197329	A	A	43197329	5	1	195	1	0	0	0	0	0	0	1	0	12356	1014	35	4	1260	4	POTEA	8	43197329	Splice_Site	SNP	G	TCGA-67-3772-01A-01W-0928-08	12542100	43197329	103166693	61	157153											
UBE2V2	7336	broad.mit.edu	37	chr8	48962335	48962336	+	Intron	INS	-	T	T													cattcatattgtactttcccINSttttttttttttagcactta					rs72170674		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48962336	T	T	48962335	6	5	195	0	1	1	1	0	0	0	0	0	17002	696	24	0		0	UBE2V2	8	48962335	Intron	INS	-	TCGA-67-3772-01A-01W-0928-08	5765006	48962335	97401687	62	157154											
PXDNL	137902	broad.mit.edu	37	chr8	52359654	52359654	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggccttgatcgtgctgtgCtgcacggtcaattctcaaag	11	10	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52359654	G	G	52359654	3	3	195	1	0	0	0	0	1	0	0	0	12956	797	28	4	3004	4	PXDNL	8	52359654	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	3397319	52359654	94004368	63	157155											
CALB1	793	broad.mit.edu	37	chr8	91075713	91075713	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagacagaatgccattattCtagctatttgaggaataatt	7	5	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91075713	G	G	91075713	1	3	195	0	1	0	0	0	0	0	0	0	2599	928	32	4		4	CALB1	8	91075713	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	38716059	91075713	55288309	64	157156											
OTUD6B	51633	broad.mit.edu	37	chr8	92090700	92090700	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgctcaaatattggcagcTagacagttagaaattaaaca	7	7	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92090700	C	C	92090700	2	2	195	1	0	0	0	0	0	0	0	1	11411	1509	53	5		5	OTUD6B	8	92090700	Silent	SNP	T	TCGA-67-3772-01A-01W-0928-08	1014987	92090700	54273322	65	157157											
RAD21	5885	broad.mit.edu	37	chr8	117859695	117859695	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacacatgggggcaatttgTaagcactagtgaatcaaaca	9	8	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117859695	G	G	117859695	1	3	195	0	1	0	0	0	0	0	0	0	13089	1653	57	5		5	RAD21	8	117859695	3'UTR	SNP	T	TCGA-67-3772-01A-01W-0928-08	25768995	117859695	28504327	66	157158											
TG	7038	broad.mit.edu	37	chr8	133984814	133984815	+	Intron	INS	-	T	T													actcagtttcctgattgtggINSttttttgttttttttttttc					rs150963971	by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133984815	T	T	133984814	6	5	195	0	1	1	1	0	0	0	0	0	15936	1276	44	0		0	TG	8	133984814	Intron	INS	-	TCGA-67-3772-01A-01W-0928-08	16125119	133984814	12379208	67	157159											
GPR172A	79581	broad.mit.edu	37	chr8	145583657	145583657	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctagtgcagggtgtgggcCgcctcgagtgcccgccagcc	15	16	0	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145583657	T	T	145583657	3	4	195	1	0	0	0	0	1	0	0	0	6734	652	23	4	511	4	GPR172A	8	145583657	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	11598843	145583657	780365	68	157160											
DAPK1	1612	broad.mit.edu	37	chr9	90255182	90255182	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaccaaggggtcatcattAatgttctatgcccaacttta	6	10	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90255182	C	C	90255182	1	2	195	0	1	0	0	0	0	0	0	0	4268	377	13	5		5	DAPK1	9	90255182	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08		90255182	50958249	69	157161											
ASTN2	23245	broad.mit.edu	37	chr9	119737438	119737438	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gttctccaacagggggacttCcaaggttttaagaagtacct	10	9	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119737438	G	G	119737438	1	3	195	0	1	0	0	0	0	0	0	0	1069	870	30	4		4	ASTN2	9	119737438	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	29482256	119737438	21475993	70	157162											
DBC1	1620	broad.mit.edu	37	chr9	121930416	121930416	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccgtggcacacgcagctcCgctggctctccaggaaggtt	13	14	1	0	rs141766717	byFrequency;by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121930416	T	T	121930416	3	4	195	1	0	0	0	0	1	0	0	0	4280	652	23	4	1057	4	DBC1	9	121930416	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	2192978	121930416	19283015	71	157163											
TOR1A	1861	broad.mit.edu	37	chr9	132585013	132585013	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccacccgtgcagggagagCgtgagaggtttcttgggctt	16	9	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132585013	T	T	132585013	2	4	195	1	0	0	0	0	0	0	0	1	16495	755	27	4		4	TOR1A	9	132585013	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08	10654597	132585013	8628418	72	157164											
USP20	10868	broad.mit.edu	37	chr9	132623902	132623902	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccaattggtaggtcgacActttgtccgagggccgagag	14	9	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132623902	C	C	132623902	1	2	195	0	1	0	0	0	0	0	0	0	17178	174	6	5		5	USP20	9	132623902	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	38889	132623902	8589529	73	157165											
MAN1B1	11253	broad.mit.edu	37	chr9	139997282	139997285	+	Intron	DEL	ACAC	-	-													gcgtgcaggtcggtggtgttAcacacattcacactgttgca					rs71835567		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139997285	-	-	139997282	6	5	195	0	1	1	0	1	0	0	0	0	9304	406	14	0		0	MAN1B1	9	139997282	Intron	DEL	ACAC	TCGA-67-3772-01A-01W-0928-08	7373380	139997282	1216149	74	157166											
ST8SIA6	338596	broad.mit.edu	37	chr10	17363049	17363049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttagagaagggccagaatCcatacagcttcacattttta	7	8	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17363049	A	A	17363049	3	1	195	1	0	0	0	0	1	0	0	0	15354	855	30	3	175	3	ST8SIA6	10	17363049	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08		17363049	118171698	75	157167											
MAP3K8	1326	broad.mit.edu	37	chr10	30748249	30748249	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtccagggatgagagagctGatagaagcttccctggagag	15	7	0	5			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30748249	C	C	30748249	2	2	195	1	0	0	0	0	0	0	0	1	9348	1277	45	4		4	MAP3K8	10	30748249	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	13385200	30748249	104786498	76	157168											
MAP3K8	1326	broad.mit.edu	37	chr10	30748321	30748321	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctactaaaacatgaggccctGaacccgcccagagaggatca	9	13	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30748321	C	C	30748321	2	2	195	1	0	0	0	0	0	0	0	1	9348	1277	45	4		4	MAP3K8	10	30748321	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	72	30748321	104786426	77	157169											
SEC24C	9632	broad.mit.edu	37	chr10	75530898	75530898	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggctagcttccagaaaGcaccccaggatgtcagagaa	10	13	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75530898	T	T	75530898	1	4	195	0	1	0	0	0	0	0	0	0	14109	986	34	3		3	SEC24C	10	75530898	3'UTR	SNP	G	TCGA-67-3772-01A-01W-0928-08	44782577	75530898	60003849	78	157170											
FAM178A	55719	broad.mit.edu	37	chr10	102690783	102690783	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacacaaggtttccttacgtCtgcttatcactatgtccagt	6	11	2	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102690783	T	T	102690783	3	4	195	1	0	0	0	0	1	0	0	0	5548	913	32	4	2418	4	FAM178A	10	102690783	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	27159885	102690783	32843964	79	157171											
GBF1	8729	broad.mit.edu	37	chr10	104110936	104110936	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagaggaaaaactgtctctCaaagctagacaggctgcctt	10	9	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104110936	G	G	104110936	1	3	195	0	1	0	0	0	0	0	0	0	6333	841	29	4		4	GBF1	10	104110936	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	1420153	104110936	31423811	80	157172											
COL17A1	1308	broad.mit.edu	37	chr10	105801076	105801076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctggtgggcctcgggGtcctggtgggcctggaatgg	18	11	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105801076	T	T	105801076	3	4	195	1	0	0	0	0	1	0	0	0	3706	1261	44	3	1937	3	COL17A1	10	105801076	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	1690140	105801076	29733671	81	157173											
ATRNL1	26033	broad.mit.edu	37	chr10	116889312	116889312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaggtaagcatgtgtggTgtgatggcttttgaaacatt	14	4	0	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116889312	C	C	116889312	1	2	195	0	1	0	0	0	0	0	0	0	1211	1711	59	5		5	ATRNL1	10	116889312	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	11088236	116889312	18645435	82	157174											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118228714	118228714	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggaaattgcttcttttgTtccaaagaaggttgcccaac	9	9	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118228714	C	C	118228714	2	2	195	1	0	0	0	0	0	0	0	1	12247	1731	60	5		5	PNLIPRP3	10	118228714	Silent	SNP	T	TCGA-67-3772-01A-01W-0928-08	1339402	118228714	17306033	83	157175											
NLRP10	338322	broad.mit.edu	37	chr11	7981660	7981660	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccttcctgctcctttaccTccagcagcctttgcacttct	4	18	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7981660	C	C	7981660	3	2	195	1	0	0	0	0	1	0	0	0	10567	1551	54	5	472	5	NLRP10	11	7981660	Missense_Mutation	SNP	T	TCGA-67-3772-01A-01W-0928-08		7981660	127024856	84	157176											
HSD17B12	51144	broad.mit.edu	37	chr11	43819909	43819909	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaagaaccattgctgttgActttgcatcagaagatattt	8	7	1	4			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43819909	T	T	43819909	3	4	195	1	0	0	0	0	1	0	0	0	7448	275	10	5	337	5	HSD17B12	11	43819909	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08	35838249	43819909	91186607	85	157177											
OR5L2	26338	broad.mit.edu	37	chr11	55594807	55594807	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttctcatctatggagtcaCgttgttagccaatctgggca	9	11	4	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55594807	T	T	55594807	3	4	195	1	0	0	0	0	1	0	0	0	11265	536	19	4	115	4	OR5L2	11	55594807	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	11774898	55594807	79411709	86	157178											
AHNAK	79026	broad.mit.edu	37	chr11	62298621	62298621	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttcaccctctatctttgGtgcagagatatctacatttc	5	11	4	1	rs148272375		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62298621	A	A	62298621	3	1	195	1	0	0	0	0	1	0	0	0	414	1261	44	4	14524	4	AHNAK	11	62298621	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	6703814	62298621	72707895	87	157179											
TPCN2	219931	broad.mit.edu	37	chr11	68852674	68852674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccccggctcctggcccgCcaggtggtctactacgtatt	11	15	1	0	rs140673036	by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68852674	A	A	68852674	1	1	195	0	1	0	0	0	0	0	0	0	16520	754	26	3		3	TPCN2	11	68852674	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	6554053	68852674	66153842	88	157180											
SORL1	6653	broad.mit.edu	37	chr11	121348762	121348762	+	Intron	DEL	G	-	-													aaaaaaaaaaaaaaaaaaaaGaaagatctttctgccagttt							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121348762	-	-	121348762	6	5	195	0	1	1	0	1	0	0	0	0	15048	957	33	0		0	SORL1	11	121348762	Intron	DEL	G	TCGA-67-3772-01A-01W-0928-08	52496088	121348762	13657754	89	157181											
ACRV1	56	broad.mit.edu	37	chr11	125550635	125550645	+	Frame_Shift_Del	DEL	CCAAGCAGATA	-	-													aacactcacctctggcagatCcaagcagataaagactcatt							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125550645	-	-	125550635	7	5	195	1	0	1	0	1	0	0	0	0	172	855	30	0	772	0	ACRV1	11	125550635	Frame_Shift_Del	DEL	CCAAGCAGATA	TCGA-67-3772-01A-01W-0928-08	4201873	125550635	9455881	90	157182											
ADIPOR2	79602	broad.mit.edu	37	chr12	1866666	1866666	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcataggttaccattgtcaAacttgatgaaattggtaatc	8	6	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1866666	T	T	1866666	1	4	195	0	1	0	0	0	0	0	0	0	319	29	1	5		5	ADIPOR2	12	1866666	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08		1866666	131985229	91	157183											
GAPDH	2597	broad.mit.edu	37	chr12	6646512	6646512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactgcttagcacccctgGccaaggtcatccatgacaac	7	16	1	1	rs77154254		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6646512	T	T	6646512	3	4	195	1	0	0	0	0	1	0	0	0	6298	1203	42	3	503	3	GAPDH	12	6646512	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	4779846	6646512	127205383	92	157184											
PZP	5858	broad.mit.edu	37	chr12	9334782	9334782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcataaaaatagtgtcatAaggacactattgcttggtct	9	6	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9334782	G	G	9334782	1	3	195	0	1	0	0	0	0	0	0	0	12977	377	13	5		5	PZP	12	9334782	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	2688270	9334782	124517113	93	157185											
TMTC1	83857	broad.mit.edu	37	chr12	29659714	29659714	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctgctgatgtgaaagcaAggcttccatcactccccttt	7	15	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29659714	G	G	29659714	1	3	195	0	1	0	0	0	0	0	0	0	16383	87	3	5		5	TMTC1	12	29659714	3'UTR	SNP	A	TCGA-67-3772-01A-01W-0928-08	20324932	29659714	104192181	94	157186											
SYT10	341359	broad.mit.edu	37	chr12	33538240	33538240	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tactttcctagaaaggcaatCggcatgttagcaatttcaaa	7	8	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33538240	T	T	33538240	1	4	195	0	1	0	0	0	0	0	0	0	15585	899	31	4		4	SYT10	12	33538240	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	3878526	33538240	100313655	95	157187											
TFCP2	7024	broad.mit.edu	37	chr12	51512348	51512348	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaaacaaacaaacaaaAaaatcataaatacagtaggt	3	6	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51512348	C	C	51512348	1	2	195	0	1	0	0	0	0	0	0	0	15918	29	1	5		5	TFCP2	12	51512348	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	17974108	51512348	82339547	96	157188											
KRT18	3875	broad.mit.edu	37	chr12	53344208	53344208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcaagtaagtttgggggCtagagagctgggggtccagg	19	5	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53344208	A	A	53344208	1	1	195	0	1	0	0	0	0	0	0	0	8526	812	28	3		3	KRT18	12	53344208	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	1831860	53344208	80507687	97	157189											
AAAS	8086	broad.mit.edu	37	chr12	53702154	53702154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggtaaggacaggttaGgagagtttcagtgtggtccc	16	6	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53702154	T	T	53702154	1	4	195	0	1	0	0	0	0	0	0	0	8	1015	35	2		2	AAAS	12	53702154	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	357946	53702154	80149741	98	157190											
KIF5A	3798	broad.mit.edu	37	chr12	57975228	57975228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcctggccactacccagCatcctcacccaccaacccct	5	23	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57975228	A	A	57975228	3	1	195	1	0	0	0	0	1	0	0	0	8375	710	25	3	2884	3	KIF5A	12	57975228	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	4273074	57975228	75876667	99	157191											
FRS2	10818	broad.mit.edu	37	chr12	69962797	69962797	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatgtagtgcacacatggtCttctgaagaagccatgggta	11	8	3	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69962797	G	G	69962797	1	3	195	0	1	0	0	0	0	0	0	0	6121	928	32	4		4	FRS2	12	69962797	5'UTR	SNP	C	TCGA-67-3772-01A-01W-0928-08	11987569	69962797	63889098	100	157192											
MYBPC1	4604	broad.mit.edu	37	chr12	102069263	102069263	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggcacatttcatcagaGgtaaaggagatggcacaagg	12	6	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102069263	A	A	102069263	1	1	195	0	1	0	0	0	0	0	0	0	10105	1015	35	4		4	MYBPC1	12	102069263	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	32106466	102069263	31782632	101	157193											
STAB2	55576	broad.mit.edu	37	chr12	104131384	104131384	+	Intron	DEL	C	-	-													ctctctctctctctctttctCttttttttttttttttttct					rs57778951		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104131384	-	-	104131384	6	5	195	0	1	1	0	1	0	0	0	0	15356	928	32	0		0	STAB2	12	104131384	Intron	DEL	C	TCGA-67-3772-01A-01W-0928-08	2062121	104131384	29720511	102	157194											
PRKAB1	5564	broad.mit.edu	37	chr12	120110257	120110257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacaactggagtaaacttcCcctcaccagaaggtaattgc	7	12	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120110257	A	A	120110257	3	1	195	1	0	0	0	0	1	0	0	0	12601	623	22	2	317	2	PRKAB1	12	120110257	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	15978873	120110257	13741638	103	157195											
C12orf43	64897	broad.mit.edu	37	chr12	121448918	121448918	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatagtacctgaggctcggTtgggaggttgacaactggct	15	8	0	2	rs112728225	byFrequency	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121448918	A	A	121448918	3	1	195	1	0	0	0	0	1	0	0	0	1702	1722	60	5	631	5	C12orf43	12	121448918	Missense_Mutation	SNP	T	TCGA-67-3772-01A-01W-0928-08	1338661	121448918	12402977	104	157196											
TCTN2	79867	broad.mit.edu	37	chr12	124172778	124172779	+	Intron	INS	-	A	A													tcttttttttttttttttttINSatgagacggagtctcgctct					rs58689399		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124172779	A	A	124172778	6	5	195	0	1	1	1	0	0	0	0	0	15845	1769	61	0		0	TCTN2	12	124172778	Intron	INS	-	TCGA-67-3772-01A-01W-0928-08	2723860	124172778	9679117	105	157197											
GPR133	283383	broad.mit.edu	37	chr12	131471727	131471727	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccctgagcacctctgatcCgagtggaaaagtgtctcgtg	12	11	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131471727	T	T	131471727	3	4	195	1	0	0	0	0	1	0	0	0	6708	652	23	4	600	4	GPR133	12	131471727	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	7298949	131471727	2380168	106	157198											
PDS5B	23047	broad.mit.edu	37	chr13	33315189	33315190	+	Intron	INS	-	T	T													ttacattttaaagtccctggINStttttttttttttctcgttt					rs2320470		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33315190	T	T	33315189	6	5	195	0	1	1	1	0	0	0	0	0	11786	1276	44	0		0	PDS5B	13	33315189	Intron	INS	-	TCGA-67-3772-01A-01W-0928-08		33315189	81854689	107	157199											
SETDB2	83852	broad.mit.edu	37	chr13	50064943	50064943	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttctaacctttgtgtttAtttttatttaacagcatagt	4	5	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50064943	C	C	50064943	1	2	195	0	1	0	0	0	0	0	0	0	14252	464	16	5		5	SETDB2	13	50064943	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	16749754	50064943	65104935	108	157200											
MYO16	23026	broad.mit.edu	37	chr13	109779804	109779804	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccacggaaacagcccccGcccaagccaaagagggaccc	9	18	1	1	rs151007439		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109779804	A	A	109779804	2	1	195	1	0	0	0	0	0	0	0	1	10158	1074	38	4		4	MYO16	13	109779804	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	59714861	109779804	5390074	109	157201											
C14orf105	55195	broad.mit.edu	37	chr14	57949762	57949762	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cccccagttcacctccctgtCaggttactgctgcagctcac	7	18	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57949762	G	G	57949762	1	3	195	0	1	0	0	0	0	0	0	0	1750	841	29	4		4	C14orf105	14	57949762	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08		57949762	49399778	110	157202											
C14orf45	80127	broad.mit.edu	37	chr14	74495917	74495917	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaacagcaattaaatgaaAcaaaggaaaaagcccaagag	8	6	0	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74495917	G	G	74495917	3	3	195	1	0	0	0	0	1	0	0	0	1788	43	2	5	326	5	C14orf45	14	74495917	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08	16546155	74495917	32853623	111	157203											
TMEM63C	57156	broad.mit.edu	37	chr14	77708818	77708818	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaagacattatttggtaagCctcctccatccctcccctct	4	16	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77708818	G	G	77708818	1	3	195	0	1	0	0	0	0	0	0	0	16315	754	26	4		4	TMEM63C	14	77708818	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	3212901	77708818	29640722	112	157204											
SPATA7	55812	broad.mit.edu	37	chr14	88895614	88895614	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatatctctgttcaatcactTaaaatttgctgtgttatatt	5	6	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88895614	C	C	88895614	1	2	195	0	1	0	0	0	0	0	0	0	15130	1769	61	5		5	SPATA7	14	88895614	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	11186796	88895614	18453926	113	157205											
KCNK13	56659	broad.mit.edu	37	chr14	90650622	90650622	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accagcggcagctccggagaCgaggggccctgccccaggag	16	15	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90650622	T	T	90650622	4	4	195	1	0	0	0	0	0	1	0	0	8131	528	19	4	508	4	KCNK13	14	90650622	Nonsense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	1755008	90650622	16698918	114	157206											
THBS1	7057	broad.mit.edu	37	chr15	39881468	39881468	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtgtgagaacacggacccCggctacaactgcctgccctg	12	15	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39881468	T	T	39881468	2	4	195	1	0	0	0	0	0	0	0	1	15976	639	23	4		4	THBS1	15	39881468	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08		39881468	62649924	115	157207											
INO80	54617	broad.mit.edu	37	chr15	41371789	41371789	+	Intron	DEL	C	-	-													taccaaaaaaaaaaaaaaaaCaaaaaattgacagtgtcatt							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41371789	-	-	41371789	6	5	195	0	1	1	0	1	0	0	0	0	7816	493	17	0		0	INO80	15	41371789	Intron	DEL	C	TCGA-67-3772-01A-01W-0928-08	1490321	41371789	61159603	116	157208											
MAP1A	4130	broad.mit.edu	37	chr15	43818488	43818488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccagaaaaggtcaaggCcatggaagagaagttagaag	12	7	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43818488	A	A	43818488	3	1	195	1	0	0	0	0	1	0	0	0	9319	739	26	3	4819	3	MAP1A	15	43818488	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	2446699	43818488	58712904	117	157209											
MYO5A	4644	broad.mit.edu	37	chr15	52643464	52643464	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttaccttgggttggatgGcctctttctggctcaccagt	11	12	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52643464	A	A	52643464	3	1	195	1	0	0	0	0	1	0	0	0	10172	1203	42	4	1787	4	MYO5A	15	52643464	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	8824976	52643464	49887928	118	157210											
UNC45A	55898	broad.mit.edu	37	chr15	91485697	91485697	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctgagcatactgggaactCggcgagtagtctccatcctg	11	13	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91485697	T	T	91485697	3	4	195	1	0	0	0	0	1	0	0	0	17114	875	31	4	744	4	UNC45A	15	91485697	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	38842233	91485697	11045695	119	157211											
TTC23	64927	broad.mit.edu	37	chr15	99696405	99696405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccctgcgccaggtctgctCctcccaggagccggtatgtc	11	17	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99696405	A	A	99696405	3	1	195	1	0	0	0	0	1	0	0	0	16816	855	30	3	264	3	TTC23	15	99696405	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	8210708	99696405	2834987	120	157212											
C16orf91	283951	broad.mit.edu	37	chr16	1479308	1479308	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcccagcagcctttcctggGacctgcaggtgaccccaccc	9	19	0	1	rs147949220	byFrequency;by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1479308	A	A	1479308	3	1	195	1	0	0	0	0	1	0	0	0	1858	1174	41	4	1050	4	C16orf91	16	1479308	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08		1479308	88875445	121	157213											
C16orf62	57020	broad.mit.edu	37	chr16	19619494	19619494	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggatcttgttttttgtaTtacagatcacttttctccag	7	7	3	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19619494	C	C	19619494	1	2	195	0	1	0	0	0	0	0	0	0	1839	1508	52	5		5	C16orf62	16	19619494	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	18140186	19619494	70735259	122	157214											
GPR139	124274	broad.mit.edu	37	chr16	20043736	20043736	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagcgggtggcagacagcgAtatacctgtcaatggttaac	13	8	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043736	T	T	20043736	3	4	195	1	0	0	0	0	1	0	0	0	6713	333	12	5	682	5	GPR139	16	20043736	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08	424242	20043736	70311017	123	157215											
CRYM	1428	broad.mit.edu	37	chr16	21272522	21272522	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctctttccaccaatgggtGaacctgccttgtgcgctagt	10	12	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21272522	A	A	21272522	1	1	195	0	1	0	0	0	0	0	0	0	3953	1305	45	4		4	CRYM	16	21272522	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	1228786	21272522	69082231	124	157216											
USP31	57478	broad.mit.edu	37	chr16	23099194	23099194	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatcacctttaaagtacGgtaattcctttaacactgtt	5	8	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23099194	A	A	23099194	1	1	195	0	1	0	0	0	0	0	0	0	17189	1131	39	4		4	USP31	16	23099194	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	1826672	23099194	67255559	125	157217											
AQP8	343	broad.mit.edu	37	chr16	25239925	25239925	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggcccagaggagcgaCcccctgcttccactgcttgg	13	15	0	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25239925	T	T	25239925	1	4	195	0	1	0	0	0	0	0	0	0	834	522	18	4		4	AQP8	16	25239925	3'UTR	SNP	C	TCGA-67-3772-01A-01W-0928-08	2140731	25239925	65114828	126	157218											
C16orf87	388272	broad.mit.edu	37	chr16	46843750	46843759	+	Intron	DEL	CCCAAGTTCT	-	-													ggcttagcaagaactgtttgCccaagttctcattgtcttcc							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46843759	-	-	46843750	6	5	195	0	1	1	0	1	0	0	0	0	1854	754	26	0		0	C16orf87	16	46843750	Intron	DEL	CCCAAGTTCT	TCGA-67-3772-01A-01W-0928-08	21603825	46843750	43511003	127	157219											
SPIRE2	84501	broad.mit.edu	37	chr16	89911744	89911744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagaacctgcaaccatgGtcgtgccactagccagctcg	9	14	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89911744	T	T	89911744	3	4	195	1	0	0	0	0	1	0	0	0	15190	1261	44	3	265	3	SPIRE2	16	89911744	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	43067994	89911744	443009	128	157220											
VPS53	55275	broad.mit.edu	37	chr17	559949	559949	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgactaagaaatgtgtgtgTgtgtgtgtgtgtgtgtgtgt	16	2	0	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	559949	G	G	559949	1	3	195	0	1	0	0	0	0	0	0	0	17342	1711	59	5		5	VPS53	17	559949	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08		559949	80635261	129	157221											
GSG2	83903	broad.mit.edu	37	chr17	3628194	3628194	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagtgttcccaagggccGcattgtgccaaggggaatag	15	10	0	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3628194	A	A	3628194	3	1	195	1	0	0	0	0	1	0	0	0	6888	1087	38	4	967	4	GSG2	17	3628194	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	3068245	3628194	77567016	130	157222											
ENO3	2027	broad.mit.edu	37	chr17	4859168	4859178	+	Intron	DEL	CTGTCTCTGCC	-	-													gtctctgccctgtctctgctCtgtctctgccctgtctctgc							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4859178	-	-	4859168	6	5	195	0	1	1	0	1	0	0	0	0	5165	928	32	0		0	ENO3	17	4859168	Intron	DEL	CTGTCTCTGCC	TCGA-67-3772-01A-01W-0928-08	1230974	4859168	76336042	131	157223											
USP6	9098	broad.mit.edu	37	chr17	5041502	5041502	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccatgaacgatgacaccGtgctcaagcatcttagggcc	12	12	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5041502	A	A	5041502	3	1	195	1	0	0	0	0	1	0	0	0	17213	1145	40	4	1058	4	USP6	17	5041502	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	182334	5041502	76153708	132	157224											
ASGR2	433	broad.mit.edu	37	chr17	7005640	7005640	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccctcaggctgaagcaccaGctcccgacaagactgcttcc	9	17	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7005640	C	C	7005640	1	2	195	0	1	0	0	0	0	0	0	0	1044	986	34	4		4	ASGR2	17	7005640	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	1964138	7005640	74189570	133	157225											
COX10	1352	broad.mit.edu	37	chr17	14080573	14080573	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagagctgtgcttccttgGgagtgtgccaagcatttact	13	9	0	1	rs2260450		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14080573	A	A	14080573	1	1	195	0	1	0	0	0	0	0	0	0	3794	1247	43	4		4	COX10	17	14080573	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	7074933	14080573	67114637	134	157226											
CCDC144A	9720	broad.mit.edu	37	chr17	16612580	16612580	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgaaaataaattagactgCgacaatgataacaaaccagg	7	7	0	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16612580	T	T	16612580	2	4	195	1	0	0	0	0	0	0	0	1	2803	776	27	4		4	CCDC144A	17	16612580	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08	2532007	16612580	64582630	135	157227											
SLC47A2	146802	broad.mit.edu	37	chr17	19618003	19618003	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attggctctgcccttgcctgGcttcctgcccagctccagga	10	16	1	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19618003	A	A	19618003	1	1	195	0	1	0	0	0	0	0	0	0	14762	1218	42	4		4	SLC47A2	17	19618003	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	3005423	19618003	61577207	136	157228											
CYTSB	92521	broad.mit.edu	37	chr17	20108150	20108150	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttgagcactccccaaattCagaaggggcagcaagtcaca	9	12	3	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20108150	G	G	20108150	4	3	195	1	0	0	0	0	0	1	0	0	4243	838	29	4	842	4	CYTSB	17	20108150	Nonsense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	490147	20108150	61087060	137	157229											
SLFN11	91607	broad.mit.edu	37	chr17	33680037	33680037	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgctttttgccttccCataccagtccccatcttcag	6	14	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33680037	G	G	33680037	3	3	195	1	0	0	0	0	1	0	0	0	14847	594	21	4	665	4	SLFN11	17	33680037	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	13571887	33680037	47515173	138	157230											
KLHL10	317719	broad.mit.edu	37	chr17	40004382	40004382	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgagtgctatgatgaaaaGaccgatgagtggtatgatgc	14	4	0	6			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40004382	A	A	40004382	2	1	195	1	0	0	0	0	0	0	0	1	8437	933	33	4		4	KLHL10	17	40004382	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	6324345	40004382	41190828	139	157231											
AOC2	314	broad.mit.edu	37	chr17	41002088	41002088	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagtcctccagctcctcctTcttcttgcaggatctggtgg	9	13	3	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41002088	C	C	41002088	1	2	195	0	1	0	0	0	0	0	0	0	729	1798	62	5		5	AOC2	17	41002088	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	997706	41002088	40193122	140	157232											
ARL17A	51326	broad.mit.edu	37	chr17	44630734	44630734	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agacggtggttgttgtcataGataatcttaattgcgttttc	10	5	2	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44630734	C	C	44630734	1	2	195	0	1	0	0	0	0	0	0	0	935	957	33	4		4	ARL17A	17	44630734	3'UTR	SNP	G	TCGA-67-3772-01A-01W-0928-08	3628646	44630734	36564476	141	157233											
MYOM1	8736	broad.mit.edu	37	chr18	3102545	3102545	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atctttggaccaggagaactCggactttggagtcatcttat	10	8	3	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3102545	G	G	3102545	3	3	195	1	0	0	0	0	1	0	0	0	10185	893	31	4	1619	4	MYOM1	18	3102545	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08		3102545	74974703	142	157234											
ALPK2	115701	broad.mit.edu	37	chr18	56182185	56182185	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtccctcctagtccccaacGagtcaggagtgtgacacaag	10	14	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56182185	T	T	56182185	1	4	195	0	1	0	0	0	0	0	0	0	545	1073	37	3		3	ALPK2	18	56182185	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	53079640	56182185	21895063	143	157235											
LDLR	3949	broad.mit.edu	37	chr19	11222182	11222182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaagcctctttctctcTcttccagatatcgatgagtg	6	14	3	2	rs72658861	by1000genomes	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11222182	C	C	11222182	1	2	195	0	1	0	0	0	0	0	0	0	8776	1566	54	5		5	LDLR	19	11222182	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08		11222182	47906801	144	157236											
ELOF1	84337	broad.mit.edu	37	chr19	11665121	11665121	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgagggtgcctgtcatcttCttcttgggaggcggctttcg	14	10	4	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11665121	T	T	11665121	2	4	195	1	0	0	0	0	0	0	0	1	5114	912	32	4		4	ELOF1	19	11665121	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08	442939	11665121	47463862	145	157237											
LYL1	4066	broad.mit.edu	37	chr19	13211508	13211508	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagtggcttggtctccgCttcaaccggctgctagggaa	12	12	3	0	rs142687463	byFrequency	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13211508	T	T	13211508	2	4	195	1	0	0	0	0	0	0	0	1	9194	796	28	4		4	LYL1	19	13211508	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08	1546387	13211508	45917475	146	157238											
ANKRD27	84079	broad.mit.edu	37	chr19	33140660	33140660	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaactgacaagtagactgGatgctgctcgacaggcttcc	10	11	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33140660	T	T	33140660	2	4	195	1	0	0	0	0	0	0	0	1	655	1164	41	3		3	ANKRD27	19	33140660	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	19929152	33140660	25988323	147	157239											
CD22	933	broad.mit.edu	37	chr19	35832956	35832957	+	Intron	INS	-	CTTC	CTTC													cttccttccttccttccttcINSctttctttctctctttcttt							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	CTTC	35832957	CTTC	CTTC	35832956	6	5	195	0	1	1	1	0	0	0	0	0	3015	870	30	0		0	CD22	19	35832956	Intron	INS	-	TCGA-67-3772-01A-01W-0928-08	2692296	35832956	23296027	148	157240											
TEX101	83639	broad.mit.edu	37	chr19	43922153	43922153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggaaaacttgagatcaCtggaggtaaactgaaatgaa	10	5	2	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43922153	A	A	43922153	3	1	195	1	0	0	0	0	1	0	0	0	15895	565	20	3	587	3	TEX101	19	43922153	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	8089197	43922153	15206830	149	157241											
ERCC2	2068	broad.mit.edu	37	chr19	45860756	45860756	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgtgatgatgacagactgGaaacgctcaaatacgggttt	12	6	1	4			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45860756	T	T	45860756	3	4	195	1	0	0	0	0	1	0	0	0	5255	1165	41	3	969	3	ERCC2	19	45860756	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	1938603	45860756	13268227	150	157242											
EML2	24139	broad.mit.edu	37	chr19	46141742	46141742	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggggatgggagcaccaagGagattccagcaaaaggatac	16	7	0	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46141742	A	A	46141742	1	1	195	0	1	0	0	0	0	0	0	0	5139	1189	41	4		4	EML2	19	46141742	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	280986	46141742	12987241	151	157243											
DHX34	9704	broad.mit.edu	37	chr19	47858248	47858248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggcagggccaggggctggTacccaggctcagggtcctct	17	12	2	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47858248	C	C	47858248	1	2	195	0	1	0	0	0	0	0	0	0	4547	1653	57	5		5	DHX34	19	47858248	Intron	SNP	T	TCGA-67-3772-01A-01W-0928-08	1716506	47858248	11270735	152	157244											
POLD1	5424	broad.mit.edu	37	chr19	50918038	50918038	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agattggggcttggcctcctCaggctcagggtcttggccat	14	11	3	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50918038	G	G	50918038	1	3	195	0	1	0	0	0	0	0	0	0	12285	841	29	4		4	POLD1	19	50918038	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	3059790	50918038	8210945	153	157245											
CNOT3	4849	broad.mit.edu	37	chr19	54646696	54646696	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagagtatgaagagagtgCgtctgtagggcagggaagat	17	3	1	4			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54646696	T	T	54646696	1	4	195	0	1	0	0	0	0	0	0	0	3652	783	27	4		4	CNOT3	19	54646696	5'UTR	SNP	C	TCGA-67-3772-01A-01W-0928-08	3728658	54646696	4482287	154	157246											
U2AF2	11338	broad.mit.edu	37	chr19	56171936	56171937	+	Frame_Shift_Ins	INS	-	C	C													gtaaatactgggacgtgccaINScccccaggctttgagcacat							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56171937	C	C	56171936	7	5	195	1	0	1	1	0	0	0	0	0	16949	146	6	0	299	0	U2AF2	19	56171936	Frame_Shift_Ins	INS	-	TCGA-67-3772-01A-01W-0928-08	1525240	56171936	2957047	155	157247											
ZNF671	79891	broad.mit.edu	37	chr19	58232868	58232868	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaattgctttccacatgCcccacacaagtatggtttct	6	13	1	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58232868	T	T	58232868	3	4	195	1	0	0	0	0	1	0	0	0	18205	739	26	4	1022	4	ZNF671	19	58232868	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	2060932	58232868	896115	156	157248											
TRIM28	10155	broad.mit.edu	37	chr19	59059142	59059142	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caagaccctacctagcctgaCctgctgtgtcccctagaatc	7	16	0	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59059142	G	G	59059142	1	3	195	0	1	0	0	0	0	0	0	0	16626	522	18	4		4	TRIM28	19	59059142	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08	826274	59059142	69841	157	157249											
FAM110A	83541	broad.mit.edu	37	chr20	826325	826325	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcgggagagcccagcagCtgaaggctaggcgccactgg	17	12	0	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	826325	T	T	826325	3	4	195	1	0	0	0	0	1	0	0	0	5442	797	28	4	880	4	FAM110A	20	826325	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08		826325	62199195	158	157250											
PROKR2	128674	broad.mit.edu	37	chr20	5294752	5294752	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggttggcaatgagcagattGgtgaggttgcgcaacttctt	14	6	1	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5294752	A	A	5294752	2	1	195	1	0	0	0	0	0	0	0	1	12659	1335	47	4		4	PROKR2	20	5294752	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08	4468427	5294752	57730768	159	157251											
HCK	3055	broad.mit.edu	37	chr20	30662458	30662458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaaggctcgatccctggCcacccggaaggagggctaca	15	12	0	0			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30662458	A	A	30662458	3	1	195	1	0	0	0	0	1	0	0	0	7060	739	26	3	386	3	HCK	20	30662458	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	25367706	30662458	32363062	160	157252											
SFRS6	6431	broad.mit.edu	37	chr20	42089474	42089474	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagatctaaggatgagtAtgagaaatctcgaagcaggt	12	5	2	3			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42089474	G	G	42089474	3	3	195	1	0	0	0	0	1	0	0	0	14294	449	16	5	828	5	SFRS6	20	42089474	Missense_Mutation	SNP	A	TCGA-67-3772-01A-01W-0928-08	11427016	42089474	20936046	161	157253											
RNF114	55905	broad.mit.edu	37	chr20	48568712	48568712	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctatctgtctcatgttaCagagcttccattacatatta	5	9	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48568712	T	T	48568712	1	4	195	0	1	0	0	0	0	0	0	0	13540	493	17	4		4	RNF114	20	48568712	3'UTR	SNP	C	TCGA-67-3772-01A-01W-0928-08	6479238	48568712	14456808	162	157254											
CABLES2	81928	broad.mit.edu	37	chr20	60966358	60966358	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcactgctgatcttggcagCcagcagcacgcaggcgccag	13	14	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60966358	G	G	60966358	3	3	195	1	0	0	0	0	1	0	0	0	2556	739	26	4	201	4	CABLES2	20	60966358	Missense_Mutation	SNP	C	TCGA-67-3772-01A-01W-0928-08	12397646	60966358	2059162	163	157255											
TIAM1	7074	broad.mit.edu	37	chr21	32502412	32502412	+	Intron	DEL	G	-	-													agacaagagagttaagcataGggaaaaaaaaaaaaaaaaga							TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32502412	-	-	32502412	6	5	195	0	1	1	0	1	0	0	0	0	16013	1015	35	0		0	TIAM1	21	32502412	Intron	DEL	G	TCGA-67-3772-01A-01W-0928-08		32502412	15627483	164	157256											
DOPEY2	9980	broad.mit.edu	37	chr21	37541815	37541815	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagcctttgcccttggtcAccccgatgatgtcgatcatc	9	13	2	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37541815	G	G	37541815	1	3	195	0	1	0	0	0	0	0	0	0	4748	174	6	5		5	DOPEY2	21	37541815	Intron	SNP	A	TCGA-67-3772-01A-01W-0928-08	5039403	37541815	10588080	165	157257											
LARGE	9215	broad.mit.edu	37	chr22	33777944	33777944	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagcactgctcggagcgGgtgtggtctgacagctgcac	15	11	1	1	rs144216539	byFrequency	TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33777944	A	A	33777944	2	1	195	1	0	0	0	0	0	0	0	1	8699	1219	43	4		4	LARGE	22	33777944	Silent	SNP	G	TCGA-67-3772-01A-01W-0928-08		33777944	17526622	166	157258											
PIR	8544	broad.mit.edu	37	chrX	15443977	15443977	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcctcttgttggttttttCttttcttttttttttcctga	5	8	3	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15443977	T	T	15443977	1	4	195	0	1	0	0	0	0	0	0	0	12039	928	32	4		4	PIR	23	15443977	Intron	SNP	C	TCGA-67-3772-01A-01W-0928-08		15443977	139826583	167	157259											
REPS2	9185	broad.mit.edu	37	chrX	17073016	17073016	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattgtggctcggaagaacGgctacccattgcctgagggc	13	11	1	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17073016	A	A	17073016	3	1	195	1	0	0	0	0	1	0	0	0	13337	1116	39	4	1087	4	REPS2	23	17073016	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	1629039	17073016	138197544	168	157260											
PDK3	5165	broad.mit.edu	37	chrX	24523533	24523533	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgattcatcaggtcactctGggcccaagccactggatcca	9	14	4	1			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24523533	A	A	24523533	1	1	195	0	1	0	0	0	0	0	0	0	11771	1363	47	4		4	PDK3	23	24523533	Intron	SNP	G	TCGA-67-3772-01A-01W-0928-08	7450517	24523533	130747027	169	157261											
ERCC6L	54821	broad.mit.edu	37	chrX	71427306	71427306	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatctggggaatcttccccCtcatttccatcttgagcaga	7	13	4	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71427306	T	T	71427306	2	4	195	1	0	0	0	0	0	0	0	1	5260	680	24	4		4	ERCC6L	23	71427306	Silent	SNP	C	TCGA-67-3772-01A-01W-0928-08	46903773	71427306	83843254	170	157262											
HTATSF1	27336	broad.mit.edu	37	chrX	135592250	135592250	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatctttctagaggcacccaGatggtgtggcctctgtgtcc	11	11	3	2			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135592250	A	A	135592250	3	1	195	1	0	0	0	0	1	0	0	0	7503	942	33	4	964	4	HTATSF1	23	135592250	Missense_Mutation	SNP	G	TCGA-67-3772-01A-01W-0928-08	64164944	135592250	19678310	171	157263											
H6PD	9563	broad.mit.edu	37	chr1	9307018	9307018	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacgcccagtcttccccccCcgacaggctgtggcgcagat	11	18	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9307018	G	G	9307018	1	3	196	0	1	0	0	0	0	0	0	0	7002	638	22	4		4	H6PD	1	9307018	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08		9307018	239943603	1	157264											
ZNF683	257101	broad.mit.edu	37	chr1	26694078	26694078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcagcccggtgccctggGcttactcatgctcaaggcgt	14	13	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26694078	T	T	26694078	1	4	196	0	1	0	0	0	0	0	0	0	18217	1218	42	3		3	ZNF683	1	26694078	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	17387060	26694078	222556543	2	157265											
CSMD2	114784	broad.mit.edu	37	chr1	34052206	34052206	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagggaggcatctgtagcGtacgatgtcacctgtcaaag	13	10	3	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34052206	A	A	34052206	3	1	196	1	0	0	0	0	1	0	0	0	3979	1145	40	4	3600	4	CSMD2	1	34052206	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	7358128	34052206	215198415	3	157266											
DLGAP3	58512	broad.mit.edu	37	chr1	35369906	35369906	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgataagtcctggctttgGccttggtctccggacccagg	13	11	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35369906	A	A	35369906	3	1	196	1	0	0	0	0	1	0	0	0	4601	1203	42	4	1900	4	DLGAP3	1	35369906	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	1317700	35369906	213880715	4	157267											
MACF1	23499	broad.mit.edu	37	chr1	39760730	39760730	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attttcaggagttgacaatgGaactggaggagaaacaggat	13	4	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39760730	T	T	39760730	4	4	196	1	0	0	0	0	0	1	0	0	9232	1175	41	3	2252	3	MACF1	1	39760730	Nonsense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	4390824	39760730	209489891	5	157268											
CYP4X1	260293	broad.mit.edu	37	chr1	47433266	47433266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgggaagaaggcaggtggGccgatagaaagcaggatgtg	19	4	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47433266	A	A	47433266	1	1	196	0	1	0	0	0	0	0	0	0	4226	1218	42	4		4	CYP4X1	1	47433266	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	7672536	47433266	201817355	6	157269											
DAB1	1600	broad.mit.edu	37	chr1	58521971	58521971	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcttgggaagcacatagGcatcgaagacgctcgcttca	11	11	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58521971	A	A	58521971	1	1	196	0	1	0	0	0	0	0	0	0	4250	1218	42	4		4	DAB1	1	58521971	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	11088705	58521971	190728650	7	157270											
C1orf173	127254	broad.mit.edu	37	chr1	75038095	75038095	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgtttccccttcttccGctttaagtttttgctcttct	4	13	4	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75038095	T	T	75038095	3	4	196	1	0	0	0	0	1	0	0	0	2034	1087	38	3	1297	3	C1orf173	1	75038095	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	16516124	75038095	174212526	8	157271											
LPPR4	9890	broad.mit.edu	37	chr1	99772407	99772407	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccccagtagagggcagCgaaattggctcagagacgct	13	11	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99772407	A	A	99772407	3	1	196	1	0	0	0	0	1	0	0	0	9014	767	27	3	2159	3	LPPR4	1	99772407	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	24734312	99772407	149478214	9	157272											
SLC25A24	29957	broad.mit.edu	37	chr1	108681844	108681844	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagagctgccagagaaatAaagaagaaaataattaacga	8	5	1	4			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108681844	G	G	108681844	1	3	196	0	1	0	0	0	0	0	0	0	14601	377	13	5		5	SLC25A24	1	108681844	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	8909437	108681844	140568777	10	157273											
MOV10	4343	broad.mit.edu	37	chr1	113217566	113217566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagctgccggcagctccGggaggcgggccagtgtttcg	17	12	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113217566	T	T	113217566	3	4	196	1	0	0	0	0	1	0	0	0	9812	1116	39	1	34	1	MOV10	1	113217566	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	4535722	113217566	136033055	11	157274											
SPAG17	200162	broad.mit.edu	37	chr1	118554977	118554977	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcaactatgacaactttgtCttctcgagttgtcataacct	5	10	4	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118554977	A	A	118554977	3	1	196	1	0	0	0	0	1	0	0	0	15095	913	32	3	2441	3	SPAG17	1	118554977	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	5337411	118554977	130695644	12	157275											
REG4	83998	broad.mit.edu	37	chr1	120336725	120336725	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcttatgtacacaatggTttattaaaggaatgtatggc	8	6	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120336725	G	G	120336725	1	3	196	0	1	0	0	0	0	0	0	0	13322	1740	60	5		5	REG4	1	120336725	3'UTR	SNP	T	TCGA-67-3773-01A-01W-0928-08	1781748	120336725	128913896	13	157276											
RPTN	126638	broad.mit.edu	37	chr1	152128367	152128367	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtctctctgtctgaccaTagtgagaactttggtcttgt	9	9	4	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152128367	A	A	152128367	3	1	196	1	0	0	0	0	1	0	0	0	13775	1406	49	5	1150	5	RPTN	1	152128367	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	31791642	152128367	97122254	14	157277											
DAP3	7818	broad.mit.edu	37	chr1	155698986	155698986	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtagcactacaatccactgTctctcccaatagggcataac	7	13	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155698986	C	C	155698986	1	2	196	0	1	0	0	0	0	0	0	0	4267	1682	58	5		5	DAP3	1	155698986	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	3570619	155698986	93551635	15	157278											
SPTA1	6708	broad.mit.edu	37	chr1	158606656	158606656	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctggtggtgagggaggtGgttgtaaattctgtaatacc	16	4	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158606656	T	T	158606656	1	4	196	0	1	0	0	0	0	0	0	0	15234	1363	47	2		2	SPTA1	1	158606656	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	2907670	158606656	90643965	16	157279											
SPTA1	6708	broad.mit.edu	37	chr1	158627290	158627290	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgcttcttcatcagcacCatagttagtattatctacaa	5	10	4	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158627290	T	T	158627290	3	4	196	1	0	0	0	0	1	0	0	0	15234	594	21	4	4613	4	SPTA1	1	158627290	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	20634	158627290	90623331	17	157280											
IGSF8	93185	broad.mit.edu	37	chr1	160061677	160061677	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaggacagtggcaccagtgActagggccacccctgtaccc	11	15	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160061677	T	T	160061677	3	4	196	1	0	0	0	0	1	0	0	0	7674	275	10	5	67	5	IGSF8	1	160061677	Missense_Mutation	SNP	A	TCGA-67-3773-01A-01W-0928-08	1434387	160061677	89188944	18	157281											
COPA	1314	broad.mit.edu	37	chr1	160261035	160261035	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgaatgttgttatttattGctttgtttcagaggcaagga	11	3	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160261035	A	A	160261035	1	1	196	0	1	0	0	0	0	0	0	0	3759	1334	46	4		4	COPA	1	160261035	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	199358	160261035	88989586	19	157282											
NUF2	83540	broad.mit.edu	37	chr1	163296025	163296025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaaagtaagctactagGtctattgtgtggcaagaaag	13	4	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163296025	T	T	163296025	1	4	196	0	1	0	0	0	0	0	0	0	10842	1276	44	3		3	NUF2	1	163296025	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	3034990	163296025	85954596	20	157283											
ASTN1	460	broad.mit.edu	37	chr1	176857323	176857323	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaccagagagagctcatGgtagcctcctgcaagagctg	13	11	1	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176857323	T	T	176857323	2	4	196	1	0	0	0	0	0	0	0	1	1068	1335	47	2		2	ASTN1	1	176857323	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	13561298	176857323	72393298	21	157284											
CFHR5	81494	broad.mit.edu	37	chr1	196965133	196965133	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttcagagtaagcactcaTtttattacattttcttagaa	4	6	3	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196965133	C	C	196965133	1	2	196	0	1	0	0	0	0	0	0	0	3318	1508	52	5		5	CFHR5	1	196965133	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	20107810	196965133	52285488	22	157285											
F13B	2165	broad.mit.edu	37	chr1	197026635	197026635	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcacctttagtcatataatTacaaaaaataataaagatta	3	5	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197026635	A	A	197026635	1	1	196	0	1	0	0	0	0	0	0	0	5384	1769	61	5		5	F13B	1	197026635	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	61502	197026635	52223986	23	157286											
NEK7	140609	broad.mit.edu	37	chr1	198233234	198233234	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacagtaagaaaactttctgAtgcctgttttattttctcag	6	7	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198233234	T	T	198233234	1	4	196	0	1	0	0	0	0	0	0	0	10424	348	12	5		5	NEK7	1	198233234	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	1206599	198233234	51017387	24	157287											
HSD11B1	3290	broad.mit.edu	37	chr1	209878375	209878376	+	Splice_Site	DNP	GG	TT	TT													caaacgaggaattcagaccaGgtaagtacccatgcgtctca							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	209878376	TT	TT	209878375	5	4	196	1	0	0	0	0	0	0	1	0	7442	1014	35	2	90	2	HSD11B1	1	209878375	Splice_Site	DNP	GG	TCGA-67-3773-01A-01W-0928-08	11645141	209878375	39372246	25	157288											
USH2A	7399	broad.mit.edu	37	chr1	216074227	216074227	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtggcagatgaaagcctggGaggcagcacgccatctggag	16	9	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216074227	A	A	216074227	3	1	196	1	0	0	0	0	1	0	0	0	17162	1174	41	4	8423	4	USH2A	1	216074227	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	6195852	216074227	33176394	26	157289											
RYR2	6262	broad.mit.edu	37	chr1	237608842	237608842	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtactttttcttttgtaggCgtagttgtttgatacttcat	9	5	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237608842	A	A	237608842	1	1	196	0	1	0	0	0	0	0	0	0	13880	783	27	3		3	RYR2	1	237608842	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	21534615	237608842	11641779	27	157290											
OR2M3	127062	broad.mit.edu	37	chr1	248367162	248367162	+	Frame_Shift_Del	DEL	G	-	-													tgtacatacggcccacatctGatcgctccccaacacaggac							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	248367162	-	-	248367162	7	5	196	1	0	1	0	1	0	0	0	0	11105	1290	45	0	795	0	OR2M3	1	248367162	Frame_Shift_Del	DEL	G	TCGA-67-3773-01A-01W-0928-08	10758320	248367162	883459	28	157291											
LTBP1	4052	broad.mit.edu	37	chr2	33572578	33572578	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcccggacctccacagGtaagtcccagtgacactgtg	10	16	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33572578	A	A	33572578	5	1	196	1	0	0	0	0	0	0	1	0	9160	1275	44	4	4158	4	LTBP1	2	33572578	Splice_Site	SNP	G	TCGA-67-3773-01A-01W-0928-08		33572578	209626795	29	157292											
PPM1B	5495	broad.mit.edu	37	chr2	44429147	44429147	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtatctgatgacctggaaaAtgtgtgcaattgggtagtgg	15	4	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44429147	G	G	44429147	3	3	196	1	0	0	0	0	1	0	0	0	12437	101	4	5	811	5	PPM1B	2	44429147	Missense_Mutation	SNP	A	TCGA-67-3773-01A-01W-0928-08	10856569	44429147	198770226	30	157293											
NRXN1	9378	broad.mit.edu	37	chr2	50850437	50850437	+	Intron	DEL	C	-	-													aaagccagttactctcttatCcactgcgctgttacctgacg							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50850437	-	-	50850437	6	5	196	0	1	1	0	1	0	0	0	0	10760	870	30	0		0	NRXN1	2	50850437	Intron	DEL	C	TCGA-67-3773-01A-01W-0928-08	6421290	50850437	192348936	31	157294											
NRXN1	9378	broad.mit.edu	37	chr2	51148976	51148976	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acactgtaattcatacagatGatattaagaagaaataaaat	5	4	1	4			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51148976	C	C	51148976	1	2	196	0	1	0	0	0	0	0	0	0	10760	1305	45	4		4	NRXN1	2	51148976	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	298539	51148976	192050397	32	157295											
ZNF2	7549	broad.mit.edu	37	chr2	95847911	95847911	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaatttgagatagatctcGcctgtcttaaagctgccatt	7	9	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95847911	T	T	95847911	1	4	196	0	1	0	0	0	0	0	0	0	17886	1102	38	3		3	ZNF2	2	95847911	3'UTR	SNP	G	TCGA-67-3773-01A-01W-0928-08	44698935	95847911	147351462	33	157296											
ACTR3	10096	broad.mit.edu	37	chr2	114674664	114674664	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccctctggaattcactctAtaatagaccttattaatatc	4	10	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114674664	G	G	114674664	1	3	196	0	1	0	0	0	0	0	0	0	212	464	16	5		5	ACTR3	2	114674664	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	18826753	114674664	128524709	34	157297											
BAZ2B	29994	broad.mit.edu	37	chr2	160545763	160545763	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtggttcatatccatcaActcattcaactttaacacct	4	12	4	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160545763	G	G	160545763	1	3	196	0	1	0	0	0	0	0	0	0	1337	58	2	5		5	BAZ2B	2	160545763	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	45871099	160545763	82653610	35	157298											
WIPF1	7456	broad.mit.edu	37	chr2	175437101	175437101	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacctccctgggccactTgggggtgaaaagggtttcgc	15	10	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175437101	A	A	175437101	2	1	196	1	0	0	0	0	0	0	0	1	17494	1799	63	5		5	WIPF1	2	175437101	Silent	SNP	T	TCGA-67-3773-01A-01W-0928-08	14891338	175437101	67762272	36	157299											
PDE1A	5136	broad.mit.edu	37	chr2	183094703	183094703	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttggaatgcttccaaactAacaaacctcagttacaaaga	6	9	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183094703	G	G	183094703	1	3	196	0	1	0	0	0	0	0	0	0	11727	377	13	5		5	PDE1A	2	183094703	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	7657602	183094703	60104670	37	157300											
COL3A1	1281	broad.mit.edu	37	chr2	189858787	189858787	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctgggattaatggtagTcctggtggtaaaggcgaaat	13	7	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189858787	A	A	189858787	3	1	196	1	0	0	0	0	1	0	0	0	3720	1664	58	5	1239	5	COL3A1	2	189858787	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	6764084	189858787	53340586	38	157301											
TRPM8	79054	broad.mit.edu	37	chr2	234835266	234835266	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaccctgtactccagcgcGtctcggagcacagacttgtc	11	15	1	1	rs149381224		TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234835266	A	A	234835266	2	1	196	1	0	0	0	0	0	0	0	1	16717	1132	40	4		4	TRPM8	2	234835266	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	44976479	234835266	8364107	39	157302											
ASB1	51665	broad.mit.edu	37	chr2	239355230	239355230	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgagccctgagtgctgtGctgctgctggtctcctgatg	13	13	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239355230	A	A	239355230	1	1	196	0	1	0	0	0	0	0	0	0	1017	1334	46	4		4	ASB1	2	239355230	3'UTR	SNP	G	TCGA-67-3773-01A-01W-0928-08	4519964	239355230	3844143	40	157303											
SEPT2	4735	broad.mit.edu	37	chr2	242274648	242274648	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaaacattcttatgttaCtgtaagtgtaattctacatg	6	5	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242274648	G	G	242274648	1	3	196	0	1	0	0	0	0	0	0	0	14177	580	20	4		4	SEPT2	2	242274648	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	2919418	242274648	924725	41	157304											
CAPN7	23473	broad.mit.edu	37	chr3	15288224	15288224	+	Intron	DEL	T	-	-													taaaatttatcaatacagtcTttttttaaatctaggtatat							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15288224	-	-	15288224	6	5	196	0	1	1	0	1	0	0	0	0	2657	1624	56	0		0	CAPN7	3	15288224	Intron	DEL	T	TCGA-67-3773-01A-01W-0928-08		15288224	182734206	42	157305											
NKIRAS1	28512	broad.mit.edu	37	chr3	23934429	23934429	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaccttagcccaaatactTttaacatctaaagtgcatta	3	9	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23934429	A	A	23934429	1	1	196	0	1	0	0	0	0	0	0	0	10539	1856	64	5		5	NKIRAS1	3	23934429	3'UTR	SNP	T	TCGA-67-3773-01A-01W-0928-08	8646205	23934429	174088001	43	157306											
OSBPL10	114884	broad.mit.edu	37	chr3	31921384	31921384	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctattctgcacagcaaagcaGaaaaaagcaaagtgatccag	8	9	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31921384	A	A	31921384	1	1	196	0	1	0	0	0	0	0	0	0	11369	957	33	4		4	OSBPL10	3	31921384	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	7986955	31921384	166101046	44	157307											
PLCD1	5333	broad.mit.edu	37	chr3	38057997	38057997	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatactgctgtagcttctgaCgctggtccatggagcctgag	13	10	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38057997	T	T	38057997	3	4	196	1	0	0	0	0	1	0	0	0	12126	536	19	4	1909	4	PLCD1	3	38057997	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	6136613	38057997	159964433	45	157308											
SCN11A	11280	broad.mit.edu	37	chr3	38938754	38938754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaaaatggaagaaaagCcagttaaggacaaactccat	7	7	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38938754	A	A	38938754	1	1	196	0	1	0	0	0	0	0	0	0	14026	754	26	3		3	SCN11A	3	38938754	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	880757	38938754	159083676	46	157309											
ZNF662	389114	broad.mit.edu	37	chr3	42956891	42956891	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttataattcttatgctgcagGaaccctagagacaaaatgag	8	7	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42956891	T	T	42956891	1	4	196	0	1	0	0	0	0	0	0	0	18198	1189	41	3		3	ZNF662	3	42956891	3'UTR	SNP	G	TCGA-67-3773-01A-01W-0928-08	4018137	42956891	155065539	47	157310											
CELSR3	1951	broad.mit.edu	37	chr3	48671025	48671025	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtagtctcgcctccgcaggtCcattgcttgtgttgcagaca	11	12	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48671025	G	G	48671025	3	3	196	1	0	0	0	0	1	0	0	0	3253	855	30	4		4	CELSR3	3	48671025	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	5714134	48671025	149351405	48	157311											
VPRBP	9730	broad.mit.edu	37	chr3	51470450	51470450	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgctagaatacggaattatGacactgagccatgtcagcca	9	9	1	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51470450	A	A	51470450	1	1	196	0	1	0	0	0	0	0	0	0	17312	1305	45	4		4	VPRBP	3	51470450	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	2799425	51470450	146551980	49	157312											
MAGI1	9223	broad.mit.edu	37	chr3	65479199	65479199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactcaccttcataggtgcCgacttccagaagagtcccac	7	14	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65479199	A	A	65479199	3	1	196	1	0	0	0	0	1	0	0	0	9282	652	23	1	4168	1	MAGI1	3	65479199	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	14008749	65479199	132543231	50	157313											
EPHA6	285220	broad.mit.edu	37	chr3	96963011	96963011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaacaattccgtgataGtacttgactttgtgtctcac	7	9	2	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96963011	T	T	96963011	3	4	196	1	0	0	0	0	1	0	0	0	5213	1029	36	3	1504	3	EPHA6	3	96963011	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	31483812	96963011	101059419	51	157314											
ZNF80	7634	broad.mit.edu	37	chr3	113955934	113955934	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctcatcttcctccagaaGgtctccgtgtgggagactgc	13	12	3	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113955934	A	A	113955934	1	1	196	0	1	0	0	0	0	0	0	0	18297	1015	35	4		4	ZNF80	3	113955934	5'UTR	SNP	G	TCGA-67-3773-01A-01W-0928-08	16992923	113955934	84066496	52	157315											
PTPLB	201562	broad.mit.edu	37	chr3	123301187	123301187	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccagccacctagtaaaagAgaaaacagcaatcaggaaaa	7	9	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123301187	C	C	123301187	1	2	196	0	1	0	0	0	0	0	0	0	12883	319	11	5		5	PTPLB	3	123301187	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	9345253	123301187	74721243	53	157316											
C3orf55	152078	broad.mit.edu	37	chr3	157271177	157271177	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attttattcatggtttctgcCtcataactcccatagccctt	4	12	3	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157271177	T	T	157271177	1	4	196	0	1	0	0	0	0	0	0	0	2256	696	24	4		4	C3orf55	3	157271177	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	33969990	157271177	40751253	54	157317											
PEX5L	51555	broad.mit.edu	37	chr3	179519752	179519752	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccagagattgcaggatgaGgaacttgctgctgattcctg	12	9	0	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179519752	C	C	179519752	3	2	196	1	0	0	0	0	1	0	0	0	11844	1000	35	4	139	4	PEX5L	3	179519752	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	22248575	179519752	18502678	55	157318											
YEATS2	55689	broad.mit.edu	37	chr3	183508517	183508517	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgctgtgtggccgTcaccgccgtcagtcatcact	13	12	4	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183508517	G	G	183508517	1	3	196	0	1	0	0	0	0	0	0	0	17599	1682	58	5		5	YEATS2	3	183508517	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	3988765	183508517	14513913	56	157319											
ARAP2	116984	broad.mit.edu	37	chr4	36122951	36122951	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgagcatttctgaaccctGtcagagaaaagcatagttta	8	8	3	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36122951	A	A	36122951	1	1	196	0	1	0	0	0	0	0	0	0	841	1392	48	4		4	ARAP2	4	36122951	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08		36122951	155031325	57	157320											
FAM114A1	92689	broad.mit.edu	37	chr4	38937448	38937448	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatttttttcaccttttttAagggaagtatgtctgtgagg	10	4	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38937448	T	T	38937448	1	4	196	0	1	0	0	0	0	0	0	0	5449	377	13	5		5	FAM114A1	4	38937448	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	2814497	38937448	152216828	58	157321											
COX7B2	170712	broad.mit.edu	37	chr4	46736906	46736906	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atattttaataagcagtagaGtgcttacatgacaagttggt	9	4	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46736906	A	A	46736906	1	1	196	0	1	0	0	0	0	0	0	0	3815	1044	36	4		4	COX7B2	4	46736906	3'UTR	SNP	G	TCGA-67-3773-01A-01W-0928-08	7799458	46736906	144417370	59	157322											
LRRC66	339977	broad.mit.edu	37	chr4	52864149	52864149	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggtctgtggataaagacaTttacagataaaataaatgag	9	3	1	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52864149	A	A	52864149	1	1	196	0	1	0	0	0	0	0	0	0	9105	1508	52	5		5	LRRC66	4	52864149	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	6127243	52864149	138290127	60	157323											
KDR	3791	broad.mit.edu	37	chr4	55955043	55955043	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgacaaacctgctgagCattagcttgcaagagatttc	11	8	0	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55955043	T	T	55955043	3	4	196	1	0	0	0	0	1	0	0	0	8209	710	25	4	588	4	KDR	4	55955043	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	3090894	55955043	135199233	61	157324											
TECRL	253017	broad.mit.edu	37	chr4	65155514	65155515	+	Intron	DNP	TG	GA	GA													cattttaaacactttcagtgTgatacacctctgcctatttt							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	65155515	GA	GA	65155514	1	3	196	0	1	0	0	0	0	0	0	0	15868	1711	59	5		5	TECRL	4	65155514	Intron	DNP	TG	TCGA-67-3773-01A-01W-0928-08	9200471	65155514	125998762	62	157325											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68934606	68934606	+	Intron	DEL	G	-	-													agtatattctgatttgctttGgttatagacaatcctttgtc							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68934606	-	-	68934606	6	5	196	0	1	1	0	1	0	0	0	0	16366	1363	47	0		0	TMPRSS11F	4	68934606	Intron	DEL	G	TCGA-67-3773-01A-01W-0928-08	3779092	68934606	122219670	63	157326											
CSN2	1447	broad.mit.edu	37	chr4	70826587	70826587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatacagtaaaaaatgttgGtgatgttattctctacaaat	6	4	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70826587	T	T	70826587	1	4	196	0	1	0	0	0	0	0	0	0	3982	1276	44	3		3	CSN2	4	70826587	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	1891981	70826587	120327689	64	157327											
PKD2	5311	broad.mit.edu	37	chr4	88968092	88968092	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taactagagtctttgatctcCtcagcattgtggatcttgat	8	8	4	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88968092	T	T	88968092	1	4	196	0	1	0	0	0	0	0	0	0	12061	696	24	4		4	PKD2	4	88968092	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	18141505	88968092	102186184	65	157328											
HERC5	51191	broad.mit.edu	37	chr4	89425351	89425351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgttcaggatattgcaGtaagtggaaataacattttg	9	3	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89425351	T	T	89425351	1	4	196	0	1	0	0	0	0	0	0	0	7128	1044	36	3		3	HERC5	4	89425351	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	457259	89425351	101728925	66	157329											
C4orf21	55345	broad.mit.edu	37	chr4	113554386	113554386	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaataggaaatattcaaCtatttataccacctaaaatt	3	6	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113554386	A	A	113554386	1	1	196	0	1	0	0	0	0	0	0	0	2277	580	20	3		3	C4orf21	4	113554386	5'UTR	SNP	C	TCGA-67-3773-01A-01W-0928-08	24129035	113554386	77599890	67	157330											
IRX2	153572	broad.mit.edu	37	chr5	2749785	2749785	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggccgtggcgtcccgCgtggcgttcttgcggtacgc	17	12	1	1	rs61742405	byFrequency;by1000genomes	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2749785	A	A	2749785	2	1	196	1	0	0	0	0	0	0	0	1	7914	755	27	3		3	IRX2	5	2749785	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08		2749785	178165475	68	157331											
WDR70	55100	broad.mit.edu	37	chr5	37506359	37506359	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggacaaattcctttcgagAtattggtgaatgatcctctg	9	8	1	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37506359	T	T	37506359	1	4	196	0	1	0	0	0	0	0	0	0	17448	348	12	5		5	WDR70	5	37506359	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	34756574	37506359	143408901	69	157332											
ADAMTS6	11174	broad.mit.edu	37	chr5	64711462	64711462	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgagatcactgatttttttCgggggctctctcaaggatga	11	8	3	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64711462	T	T	64711462	1	4	196	0	1	0	0	0	0	0	0	0	270	899	31	4		4	ADAMTS6	5	64711462	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	27205103	64711462	116203798	70	157333											
MRPS27	23107	broad.mit.edu	37	chr5	71616090	71616090	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagccaacgggttacggacaGaggaaggggcggggttacag	18	8	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71616090	A	A	71616090	1	1	196	0	1	0	0	0	0	0	0	0	9932	957	33	4		4	MRPS27	5	71616090	5'Flank	SNP	G	TCGA-67-3773-01A-01W-0928-08	6904628	71616090	109299170	71	157334											
IQGAP2	10788	broad.mit.edu	37	chr5	75936794	75936794	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacagtaggttacattcgtGagaatatatggtctgcttca	9	7	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75936794	T	T	75936794	4	4	196	1	0	0	0	0	0	1	0	0	7885	1291	45	3	2026	3	IQGAP2	5	75936794	Nonsense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	4320704	75936794	104978466	72	157335											
VCAN	1462	broad.mit.edu	37	chr5	82815769	82815769	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtaaccacaggtcactaTggattcaccttgggagaaga	11	8	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82815769	C	C	82815769	2	2	196	1	0	0	0	0	0	0	0	1	17265	1471	51	5		5	VCAN	5	82815769	Silent	SNP	T	TCGA-67-3773-01A-01W-0928-08	6878975	82815769	98099491	73	157336											
TTC37	9652	broad.mit.edu	37	chr5	94818288	94818288	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggtttacactgaacttgTctcaaaagtaagataacggc	9	7	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94818288	C	C	94818288	2	2	196	1	0	0	0	0	0	0	0	1	16831	1664	58	5		5	TTC37	5	94818288	Silent	SNP	T	TCGA-67-3773-01A-01W-0928-08	12002519	94818288	86096972	74	157337											
SEMA6A	57556	broad.mit.edu	37	chr5	115782618	115782618	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagagtggtggcctggtgGcttctcgtgagcgagttcgt	17	7	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115782618	T	T	115782618	3	4	196	1	0	0	0	0	1	0	0	0	14152	1194	42	3	312	3	SEMA6A	5	115782618	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	20964330	115782618	65132642	75	157338											
ZNF474	133923	broad.mit.edu	37	chr5	121488874	121488874	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcctcaaagcagcctgttcAagttaactccctgttgaact	7	12	2	1	rs145478648	by1000genomes	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121488874	T	T	121488874	1	4	196	0	1	0	0	0	0	0	0	0	18059	145	5	5		5	ZNF474	5	121488874	3'UTR	SNP	A	TCGA-67-3773-01A-01W-0928-08	5706256	121488874	59426386	76	157339											
SNCAIP	9627	broad.mit.edu	37	chr5	121759333	121759333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagagcaggtcagtggcCtaaaccggaccagctcccaa	11	13	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121759333	A	A	121759333	3	1	196	1	0	0	0	0	1	0	0	0	14955	680	24	2	911	2	SNCAIP	5	121759333	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	270459	121759333	59155927	77	157340											
PCDHA1	56147	broad.mit.edu	37	chr5	140165844	140165844	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgattttgaagtaagaGgagagcataagaaaggtgta	14	2	0	5			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140165844	A	A	140165844	1	1	196	0	1	0	0	0	0	0	0	0	11613	1015	35	4		4	PCDHA1	5	140165844	5'Flank	SNP	G	TCGA-67-3773-01A-01W-0928-08	18406511	140165844	40749416	78	157341											
PCDHA8	56140	broad.mit.edu	37	chr5	140221181	140221181	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaattctcggatcgaccGcgaggagctgtgcgggcgga	17	9	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140221181	A	A	140221181	3	1	196	1	0	0	0	0	1	0	0	0	11624	1087	38	4	277	4	PCDHA8	5	140221181	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	55337	140221181	40694079	79	157342											
PCDHA12	56137	broad.mit.edu	37	chr5	140256557	140256557	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggagcggcgggtgggCgagcacgcactgtcgagcta	19	10	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140256557	A	A	140256557	2	1	196	1	0	0	0	0	0	0	0	1	11616	755	27	3		3	PCDHA12	5	140256557	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08	35376	140256557	40658703	80	157343											
MRPL22	29093	broad.mit.edu	37	chr5	154336621	154336621	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttactcaaattatgtaaGactttcattgaaaaggaaac	6	5	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154336621	T	T	154336621	1	4	196	0	1	0	0	0	0	0	0	0	9882	957	33	3		3	MRPL22	5	154336621	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	14080064	154336621	26578639	81	157344											
RARS	5917	broad.mit.edu	37	chr5	167933091	167933091	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgttccataccattaaccAtagtaaaatcagatggaggt	9	7	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167933091	G	G	167933091	3	3	196	1	0	0	0	0	1	0	0	0	13166	217	8	5	1161	5	RARS	5	167933091	Missense_Mutation	SNP	A	TCGA-67-3773-01A-01W-0928-08	13596470	167933091	12982169	82	157345											
KIAA0319	9856	broad.mit.edu	37	chr6	24578217	24578217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggcatgcaaccaaaaccCccatgaaagccaaatctctt	6	14	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24578217	A	A	24578217	1	1	196	0	1	0	0	0	0	0	0	0	8238	638	22	2		2	KIAA0319	6	24578217	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08		24578217	146536850	83	157346											
HIST1H3D	8351	broad.mit.edu	37	chr6	26199716	26199716	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttacgataggagctctaCaaatattaccagctgcagag	9	8	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26199716	A	A	26199716	1	1	196	0	1	0	0	0	0	0	0	0	7225	493	17	3		3	HIST1H3D	6	26199716	5'Flank	SNP	C	TCGA-67-3773-01A-01W-0928-08	1621499	26199716	144915351	84	157347											
HLA-F	3134	broad.mit.edu	37	chr6	29691112	29691112	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggatactcataacgcggCcccatttctcactcccattg	6	16	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29691112	A	A	29691112	1	1	196	0	1	0	0	0	0	0	0	0	7278	754	26	3		3	HLA-F	6	29691112	5'Flank	SNP	C	TCGA-67-3773-01A-01W-0928-08	3491396	29691112	141423955	85	157348											
DAAM2	23500	broad.mit.edu	37	chr6	39847320	39847320	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagtcagcctcagggaccaCccgccccttgtttacagatc	9	16	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39847320	G	G	39847320	1	3	196	0	1	0	0	0	0	0	0	0	4249	522	18	4		4	DAAM2	6	39847320	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	10156208	39847320	131267747	86	157349											
BAI3	577	broad.mit.edu	37	chr6	70034722	70034722	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaacatatcattttccctctCccaggttcagtgtgagtctt	7	11	4	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70034722	A	A	70034722	1	1	196	0	1	0	0	0	0	0	0	0	1305	870	30	3		3	BAI3	6	70034722	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	30187402	70034722	101080345	87	157350											
LMBRD1	55788	broad.mit.edu	37	chr6	70490551	70490551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttccaaaatctatccaCccacataaaaacaatctatg	1	13	3	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70490551	A	A	70490551	1	1	196	0	1	0	0	0	0	0	0	0	8916	522	18	3		3	LMBRD1	6	70490551	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	455829	70490551	100624516	88	157351											
COL12A1	1303	broad.mit.edu	37	chr6	75833582	75833582	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacggagaggtacctgcaCaggattcacttaagtcttcc	9	12	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75833582	A	A	75833582	1	1	196	0	1	0	0	0	0	0	0	0	3701	493	17	3		3	COL12A1	6	75833582	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	5343031	75833582	95281485	89	157352											
COL12A1	1303	broad.mit.edu	37	chr6	75841736	75841736	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctggagcagggtcccagcGaacatcgaggctgttaggtg	15	10	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75841736	A	A	75841736	3	1	196	1	0	0	0	0	1	0	0	0	3701	1058	37	4	3462	4	COL12A1	6	75841736	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	8154	75841736	95273331	90	157353											
RTN4IP1	84816	broad.mit.edu	37	chr6	107066962	107066962	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattgttttcaaatgttagtAcagctctgttcgtgtaaatg	8	5	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107066962	C	C	107066962	1	2	196	0	1	0	0	0	0	0	0	0	13840	406	14	5		5	RTN4IP1	6	107066962	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	31225226	107066962	64048105	91	157354											
ITGB8	3696	broad.mit.edu	37	chr7	20449144	20449144	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatttgcaaatatctttggcActattaattgaagtgtgaac	8	5	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20449144	T	T	20449144	1	4	196	0	1	0	0	0	0	0	0	0	7971	174	6	5		5	ITGB8	7	20449144	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08		20449144	138689519	92	157355											
HOXA11	3207	broad.mit.edu	37	chr7	27222458	27222459	+	Missense_Mutation	DNP	TT	AG	AG													agtactgtaaacggtctctgTtaatttttttttccttcatt							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	27222459	AG	AG	27222458	3	1	196	1	0	0	0	0	1	0	0	0	7357	1725	60	5	46	5	HOXA11	7	27222458	Missense_Mutation	DNP	TT	TCGA-67-3773-01A-01W-0928-08	6773314	27222458	131916205	93	157356											
FAM188B	84182	broad.mit.edu	37	chr7	30821598	30821598	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcccaatgataggcaaaGgaaaatcctctaaaaacaag	6	10	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30821598	T	T	30821598	3	4	196	1	0	0	0	0	1	0	0	0	5561	991	35	2	199	2	FAM188B	7	30821598	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	3599140	30821598	128317065	94	157357											
AMPH	273	broad.mit.edu	37	chr7	38429611	38429611	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagaggaagatatttgcCatatcccaaggaggaagaag	12	5	0	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38429611	A	A	38429611	1	1	196	0	1	0	0	0	0	0	0	0	588	609	21	2		2	AMPH	7	38429611	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	7608013	38429611	120709052	95	157358											
POM121	9883	broad.mit.edu	37	chr7	72400808	72400808	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaaaccagcctgggcaaTatagtgaaaccttgtctgta	8	9	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72400808	C	C	72400808	1	2	196	0	1	0	0	0	0	0	0	0	12334	1421	49	5		5	POM121	7	72400808	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	33971197	72400808	86737855	96	157359											
RELN	5649	broad.mit.edu	37	chr7	103162494	103162494	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaatggagagccattcccGacgccacggctccacacact	9	15	0	2	rs139106600		TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103162494	A	A	103162494	3	1	196	1	0	0	0	0	1	0	0	0	13328	1059	37	4	2811	4	RELN	7	103162494	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	30761686	103162494	55976169	97	157360											
IFRD1	3475	broad.mit.edu	37	chr7	112096892	112096892	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atacataggtaaagtttagaAggaaataagattttaaaaag	8	1	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112096892	T	T	112096892	1	4	196	0	1	0	0	0	0	0	0	0	7623	87	3	5		5	IFRD1	7	112096892	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	8934398	112096892	47041771	98	157361											
PLXNA4	91584	broad.mit.edu	37	chr7	132193285	132193285	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtcctgtcctctcatcCaccaccaggtgattgaaacc	7	14	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132193285	A	A	132193285	2	1	196	1	0	0	0	0	0	0	0	1	12217	581	21	2		2	PLXNA4	7	132193285	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08	20096393	132193285	26945378	99	157362											
LRGUK	136332	broad.mit.edu	37	chr7	133812255	133812255	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccttgctggtcttttccCatggggcagaagacgaaagg	13	10	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133812255	T	T	133812255	2	4	196	1	0	0	0	0	0	0	0	1	9030	581	21	4		4	LRGUK	7	133812255	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08	1618970	133812255	25326408	100	157363											
CLEC5A	23601	broad.mit.edu	37	chr7	141631428	141631428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacagagtcaagtgtcagcGtttgagctattccagggtga	13	7	2	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141631428	T	T	141631428	1	4	196	0	1	0	0	0	0	0	0	0	3551	1160	40	3		3	CLEC5A	7	141631428	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	7819173	141631428	17507235	101	157364											
HTR5A	3361	broad.mit.edu	37	chr7	154875952	154875952	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagaaggggacacgtggcggGagcagaaggagcagcgggcc	20	9	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154875952	A	A	154875952	3	1	196	1	0	0	0	0	1	0	0	0	7520	1175	41	4	835	4	HTR5A	7	154875952	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	13244524	154875952	4262711	102	157365											
CSMD1	64478	broad.mit.edu	37	chr8	2944626	2944626	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgcatttcttaccctggcaGagtggcgtgagggagtccca	13	11	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2944626	T	T	2944626	2	4	196	1	0	0	0	0	0	0	0	1	3978	929	33	3		3	CSMD1	8	2944626	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08		2944626	143419396	103	157366											
RP1L1	94137	broad.mit.edu	37	chr8	10467287	10467287	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccctctgcggggcacgGctctgcagaggcagaggctc	16	13	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467287	T	T	10467287	3	4	196	1	0	0	0	0	1	0	0	0	13644	1203	42	3	2885	3	RP1L1	8	10467287	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	7522661	10467287	135896735	104	157367											
XPO7	23039	broad.mit.edu	37	chr8	21853061	21853061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctggtaccatgatccaGcctgtactacacctgtactc	7	14	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21853061	T	T	21853061	3	4	196	1	0	0	0	0	1	0	0	0	17576	971	34	3	2430	3	XPO7	8	21853061	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	11385774	21853061	124510961	105	157368											
UNC5D	137970	broad.mit.edu	37	chr8	35453212	35453212	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccagtcaccgggaggaaCcaggcctgttcccaagaggg	15	12	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35453212	A	A	35453212	1	1	196	0	1	0	0	0	0	0	0	0	17121	522	18	3		3	UNC5D	8	35453212	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	13600151	35453212	110910810	106	157369											
SNTG1	54212	broad.mit.edu	37	chr8	51617263	51617264	+	Missense_Mutation	DNP	GG	TT	TT													ggaaagtgacctcgcccagtGggaaagagccttccagacag							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	51617264	TT	TT	51617263	3	4	196	1	0	0	0	0	1	0	0	0	14988	1357	47	2	1196	2	SNTG1	8	51617263	Missense_Mutation	DNP	GG	TCGA-67-3773-01A-01W-0928-08	16164051	51617263	94746759	107	157370											
CPA6	57094	broad.mit.edu	37	chr8	68658167	68658167	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagacccccaaatcagAaaaagtgaggcacactctgg	9	12	3	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68658167	G	G	68658167	1	3	196	0	1	0	0	0	0	0	0	0	3826	261	9	5		5	CPA6	8	68658167	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	17040904	68658167	77705855	108	157371											
GEM	2669	broad.mit.edu	37	chr8	95272446	95272446	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgctgtcatgcacacctgCaaagatgttggccagagtgg	12	10	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95272446	A	A	95272446	3	1	196	1	0	0	0	0	1	0	0	0	6393	710	25	3	620	3	GEM	8	95272446	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	26614279	95272446	51091576	109	157372											
C8orf47	203111	broad.mit.edu	37	chr8	99102146	99102146	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacatggagcagattcaaCctgaaggaatagttggaagc	12	6	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99102146	T	T	99102146	3	4	196	1	0	0	0	0	1	0	0	0	2458	507	18	4	907	4	C8orf47	8	99102146	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	3829700	99102146	47261876	110	157373											
CSMD3	114788	broad.mit.edu	37	chr8	113299491	113299491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacctgcaatgcagtacaGttcaagttaaccaattccca	5	12	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113299491	T	T	113299491	1	4	196	0	1	0	0	0	0	0	0	0	3980	1044	36	3		3	CSMD3	8	113299491	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	14197345	113299491	33064531	111	157374											
ADCY8	114	broad.mit.edu	37	chr8	131792870	131792870	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagatgaatgggttgggttgGactcttcccagaagaaagta	13	5	1	4			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131792870	A	A	131792870	2	1	196	1	0	0	0	0	0	0	0	1	300	1161	41	4		4	ADCY8	8	131792870	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	18493379	131792870	14571152	112	157375											
TG	7038	broad.mit.edu	37	chr8	133894662	133894662	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgcacaacaaggtcagGgcttcctttctgaatgagac	10	9	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133894662	T	T	133894662	1	4	196	0	1	0	0	0	0	0	0	0	15936	1247	43	2		2	TG	8	133894662	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	2101792	133894662	12469360	113	157376											
PTPRD	5789	broad.mit.edu	37	chr9	8528763	8528763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcaatggtagggaagccCctgggaatttgatcttctgc	12	8	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8528763	A	A	8528763	3	1	196	1	0	0	0	0	1	0	0	0	12907	622	22	2	5565	2	PTPRD	9	8528763	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08		8528763	132684668	114	157377											
FAM154A	158297	broad.mit.edu	37	chr9	19027099	19027099	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaatgtgaacaaaaccctGgtgtaccttgtctccaacat	6	11	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19027099	A	A	19027099	1	1	196	0	1	0	0	0	0	0	0	0	5509	1363	47	4		4	FAM154A	9	19027099	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	10498336	19027099	122186332	115	157378											
ZCCHC7	84186	broad.mit.edu	37	chr9	37354826	37354826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaaaaaataaaaggtatGttgctagacttcttgttaga	7	4	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37354826	T	T	37354826	1	4	196	0	1	0	0	0	0	0	0	0	17719	1392	48	3		3	ZCCHC7	9	37354826	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	18327727	37354826	103858605	116	157379											
SLC35D2	11046	broad.mit.edu	37	chr9	99122536	99122536	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaagaagaaatatttggTtagaactccaataagcattt	6	4	0	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99122536	C	C	99122536	1	2	196	0	1	0	0	0	0	0	0	0	14696	1740	60	5		5	SLC35D2	9	99122536	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	61767710	99122536	42090895	117	157380											
BAT2L1	84726	broad.mit.edu	37	chr9	134360401	134360401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagagctctccaggcggcGctggctcaggcatccagcct	13	15	2	1	rs147686110	by1000genomes	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134360401	T	T	134360401	3	4	196	1	0	0	0	0	1	0	0	0	1325	1087	38	3	5726	3	BAT2L1	9	134360401	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	35237865	134360401	6853030	118	157381											
SLC39A12	221074	broad.mit.edu	37	chr10	18270479	18270479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caataataatagtaaatgcaGgatacttactatataccagg	6	6	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18270479	T	T	18270479	1	4	196	0	1	0	0	0	0	0	0	0	14729	1015	35	2		2	SLC39A12	10	18270479	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08		18270479	117264268	119	157382											
ARHGAP21	57584	broad.mit.edu	37	chr10	24919055	24919055	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatggaaaaacagttaactCagaagtattttttaaattgt	6	3	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24919055	A	A	24919055	1	1	196	0	1	0	0	0	0	0	0	0	873	841	29	3		3	ARHGAP21	10	24919055	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	6648576	24919055	110615692	120	157383											
ALOX5	240	broad.mit.edu	37	chr10	45935871	45935871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtttcctttcccccaatGtatcagctcaaccaaatccc	4	15	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45935871	A	A	45935871	1	1	196	0	1	0	0	0	0	0	0	0	540	1392	48	4		4	ALOX5	10	45935871	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	21016816	45935871	89598876	121	157384											
OGDHL	55753	broad.mit.edu	37	chr10	50946204	50946204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgggcacaatagggcgCgtccctgtcctggggacagc	15	13	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50946204	A	A	50946204	1	1	196	0	1	0	0	0	0	0	0	0	10935	783	27	3		3	OGDHL	10	50946204	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	5010333	50946204	84588543	122	157385											
PCDH15	65217	broad.mit.edu	37	chr10	56360378	56360378	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttgaggagaaaccagtgTctactaaaaaggtagaaaat	9	6	1	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56360378	A	A	56360378	1	1	196	0	1	0	0	0	0	0	0	0	11605	1682	58	5		5	PCDH15	10	56360378	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	5414174	56360378	79174369	123	157386											
CDK1	983	broad.mit.edu	37	chr10	62544479	62544479	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtacctatggagttgtGtataagggtagacacaaaac	11	6	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62544479	C	C	62544479	2	2	196	1	0	0	0	0	0	0	0	1	3154	1364	48	4		4	CDK1	10	62544479	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	6184101	62544479	72990268	124	157387											
ZMIZ1	57178	broad.mit.edu	37	chr10	81066195	81066196	+	Intron	DNP	GG	AT	AT													tgctgatggtggcaggggtcGggggtgtggttgaagagaga							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	81066196	AT	AT	81066195	1	1	196	0	1	0	0	0	0	0	0	0	17822	1131	39	4		4	ZMIZ1	10	81066195	Intron	DNP	GG	TCGA-67-3773-01A-01W-0928-08	18521716	81066195	54468552	125	157388											
CPXM2	119587	broad.mit.edu	37	chr10	125558758	125558758	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggactacacactttaaaaTgtttgttcttccatgaagag	7	7	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125558758	C	C	125558758	1	2	196	0	1	0	0	0	0	0	0	0	3870	1479	51	5		5	CPXM2	10	125558758	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	44492563	125558758	9975989	126	157389											
PSMD13	5719	broad.mit.edu	37	chr11	251770	251770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagccatctgggtccatGggggtgtgtcaggctatctt	13	10	3	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	251770	T	T	251770	1	4	196	0	1	0	0	0	0	0	0	0	12802	1363	47	2		2	PSMD13	11	251770	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08		251770	134754746	127	157390											
OR51A4	401666	broad.mit.edu	37	chr11	4967760	4967760	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaattctgttgtcagaacAggccaacttcatgacatcct	6	11	4	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4967760	T	T	4967760	3	4	196	1	0	0	0	0	1	0	0	0	11181	188	7	5	372	5	OR51A4	11	4967760	Missense_Mutation	SNP	A	TCGA-67-3773-01A-01W-0928-08	4715990	4967760	130038756	128	157391											
OR52J3	119679	broad.mit.edu	37	chr11	5068314	5068314	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtgagcacatgggcattGcaaaattgtcctgtggaaac	11	8	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5068314	A	A	5068314	3	1	196	1	0	0	0	0	1	0	0	0	11216	1319	46	4	561	4	OR52J3	11	5068314	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	100554	5068314	129938202	129	157392											
TRIM22	10346	broad.mit.edu	37	chr11	5730700	5730700	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctttatggctgtgcctcCctgtcgtattggggttttcc	10	11	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5730700	T	T	5730700	3	4	196	1	0	0	0	0	1	0	0	0	16620	623	22	4	1345	4	TRIM22	11	5730700	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	662386	5730700	129275816	130	157393											
DNHD1	144132	broad.mit.edu	37	chr11	6588836	6588836	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcacctgggccagggcctGagccactcagcctcctccag	11	18	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6588836	A	A	6588836	3	1	196	1	0	0	0	0	1	0	0	0	4708	1291	45	4	12240	4	DNHD1	11	6588836	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	858136	6588836	128417680	131	157394											
CTNND1	1500	broad.mit.edu	37	chr11	57569381	57569381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcgccatgcttggattccGcttggatgctgtcaagtcca	11	11	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57569381	T	T	57569381	3	4	196	1	0	0	0	0	1	0	0	0	4053	1087	38	3	1151	3	CTNND1	11	57569381	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	50980545	57569381	77437135	132	157395											
OR9Q2	219957	broad.mit.edu	37	chr11	57958720	57958720	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgtcgctcttttctttgGcaccctcatcttcatgtacc	6	15	5	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57958720	A	A	57958720	3	1	196	1	0	0	0	0	1	0	0	0	11350	1203	42	4	760	4	OR9Q2	11	57958720	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	389339	57958720	77047796	133	157396											
GLYATL1	92292	broad.mit.edu	37	chr11	58711127	58711127	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgatctctcagagtggCtgaggataataggtaagctc	11	8	2	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58711127	A	A	58711127	1	1	196	1	0	0	0	0	0	0	0	0	6544	796	28	3		3	GLYATL1	11	58711127	Translation_Start_Site	SNP	C	TCGA-67-3773-01A-01W-0928-08	752407	58711127	76295389	134	157397											
AHNAK	79026	broad.mit.edu	37	chr11	62284180	62284181	+	3'UTR	DEL	TA	-	-													acccaaggctgatgttttgtTatatatatatatatgtacac							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62284181	-	-	62284180	6	5	196	0	1	1	0	1	0	0	0	0	414	1769	61	0		0	AHNAK	11	62284180	3'UTR	DEL	TA	TCGA-67-3773-01A-01W-0928-08	3573053	62284180	72722336	135	157398											
MYEOV	26579	broad.mit.edu	37	chr11	69063507	69063507	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccatggaaattatgtgggCgcgaatggatgtggctctgc	14	8	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69063507	T	T	69063507	3	4	196	1	0	0	0	0	1	0	0	0	10119	768	27	4	596	4	MYEOV	11	69063507	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	6779327	69063507	65943009	136	157399											
INPPL1	3636	broad.mit.edu	37	chr11	71946219	71946219	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcacctcctgctcacagtCaagtccatggatggctatga	9	13	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71946219	T	T	71946219	2	4	196	1	0	0	0	0	0	0	0	1	7831	813	29	4		4	INPPL1	11	71946219	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08	2882712	71946219	63060297	137	157400											
CAPN5	726	broad.mit.edu	37	chr11	76834887	76834887	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcactgtggccgtgcacattCtcagcagcacctccctcatg	9	16	2	0	rs111264315	byFrequency;by1000genomes	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76834887	A	A	76834887	3	1	196	1	0	0	0	0	1	0	0	0	2655	913	32	3	1940	3	CAPN5	11	76834887	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	4888668	76834887	58171629	138	157401											
ANKRD42	338699	broad.mit.edu	37	chr11	82917155	82917155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacacgtaacaacgagagGttggacagcatctcacatag	9	11	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82917155	T	T	82917155	3	4	196	1	0	0	0	0	1	0	0	0	670	1261	44	3	204	3	ANKRD42	11	82917155	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	6082268	82917155	52089361	139	157402											
CNTN5	53942	broad.mit.edu	37	chr11	100208350	100208350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattttaaatccacagatgCagaataacgggaactaattg	7	7	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100208350	A	A	100208350	1	1	196	0	1	0	0	0	0	0	0	0	3676	725	25	3		3	CNTN5	11	100208350	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	17291195	100208350	34798166	140	157403											
MMP1	4312	broad.mit.edu	37	chr11	102667829	102667829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacattactccagagttGgaaggctttctcaatggcat	10	8	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102667829	T	T	102667829	3	4	196	1	0	0	0	0	1	0	0	0	9741	1357	47	2	1026	2	MMP1	11	102667829	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	2459479	102667829	32338687	141	157404											
ZBTB16	7704	broad.mit.edu	37	chr11	114113048	114113048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctcaaacgccacctgcGctcacatacaggtaggtcag	10	14	3	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114113048	T	T	114113048	3	4	196	1	0	0	0	0	1	0	0	0	17652	1087	38	3	1627	3	ZBTB16	11	114113048	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	11445219	114113048	20893468	142	157405											
TECTA	7007	broad.mit.edu	37	chr11	120989078	120989078	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaccgtcaagtgccgctGtctggatttcaacaatgaga	10	11	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120989078	T	T	120989078	3	4	196	1	0	0	0	0	1	0	0	0	15869	1377	48	3	876	3	TECTA	11	120989078	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	6876030	120989078	14017438	143	157406											
SORL1	6653	broad.mit.edu	37	chr11	121425746	121425746	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgctttcatgaaaacctgGcttcatgtgtctggaaagtt	9	7	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121425746	A	A	121425746	1	1	196	0	1	0	0	0	0	0	0	0	15048	1218	42	4		4	SORL1	11	121425746	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	436668	121425746	13580770	144	157407											
GRAMD1B	57476	broad.mit.edu	37	chr11	123489404	123489404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtctccttcctagtctGgtgctgctggtcatccttaa	8	14	3	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123489404	T	T	123489404	2	4	196	1	0	0	0	0	0	0	0	1	6814	1335	47	2		2	GRAMD1B	11	123489404	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	2063658	123489404	11517112	145	157408											
CHEK1	1111	broad.mit.edu	37	chr11	125513880	125513880	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgttttttcataataatcGacattaacataatactgtaa	4	5	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125513880	A	A	125513880	1	1	196	0	1	0	0	0	0	0	0	0	3365	1073	37	4		4	CHEK1	11	125513880	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	2024476	125513880	9492636	146	157409											
CACNA1C	775	broad.mit.edu	37	chr12	2797654	2797654	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccccctcctccagagaagCcattcccctgcctcattccc	5	21	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2797654	A	A	2797654	3	1	196	1	0	0	0	0	1	0	0	0	2566	738	26	3	6717	3	CACNA1C	12	2797654	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08		2797654	131054241	147	157410											
KLRC2	3822	broad.mit.edu	37	chr12	10584778	10584778	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgaaacacaccaatccatgAggaaggtaaaatgctggcca	9	10	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10584778	G	G	10584778	3	3	196	1	0	0	0	0	1	0	0	0	8487	304	11	5	192	5	KLRC2	12	10584778	Missense_Mutation	SNP	A	TCGA-67-3773-01A-01W-0928-08	7787124	10584778	123267117	148	157411											
KIAA1467	57613	broad.mit.edu	37	chr12	13229033	13229033	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcgttcccctccatccTtctggatctggccaacacca	6	18	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13229033	A	A	13229033	3	1	196	1	0	0	0	0	1	0	0	0	8305	1609	56	5	1640	5	KIAA1467	12	13229033	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	2644255	13229033	120622862	149	157412											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	196	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	12169251	25398284	108453611	150	157413											
OR6C65	403282	broad.mit.edu	37	chr12	55794443	55794443	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtggaaacatgatcatcaTtatgttaacattgtcaaata	6	5	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55794443	A	A	55794443	3	1	196	1	0	0	0	0	1	0	0	0	11289	1493	52	5	133	5	OR6C65	12	55794443	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	30396159	55794443	78057452	151	157414											
MDM2	4193	broad.mit.edu	37	chr12	69218332	69218332	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatttttttcctaaatgctTaggaccttgtacaagagctt	6	7	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69218332	G	G	69218332	1	3	196	0	1	0	0	0	0	0	0	0	9506	1769	61	5		5	MDM2	12	69218332	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	13423889	69218332	64633563	152	157415											
TPH2	121278	broad.mit.edu	37	chr12	72355191	72355191	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcacaagaccatgagctGtaggataatcacgcttcttc	8	10	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72355191	T	T	72355191	1	4	196	0	1	0	0	0	0	0	0	0	16526	1392	48	3		3	TPH2	12	72355191	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	3136859	72355191	61496704	153	157416											
NAV3	89795	broad.mit.edu	37	chr12	78542638	78542638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaaatccataaactgcGgagagagctggttgcatcac	10	10	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78542638	T	T	78542638	3	4	196	1	0	0	0	0	1	0	0	0	10279	1116	39	1	4810	1	NAV3	12	78542638	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	6187447	78542638	55309257	154	157417											
TMTC2	160335	broad.mit.edu	37	chr12	83251161	83251161	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctttctcctctccttGctctgctacattaaacactg	3	15	5	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83251161	T	T	83251161	3	4	196	1	0	0	0	0	1	0	0	0	16384	1310	46	3	462	3	TMTC2	12	83251161	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	4708523	83251161	50600734	155	157418											
CUX2	23316	broad.mit.edu	37	chr12	111746138	111746138	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacctgcagcctcccccagGtaagtgtccctgccaccatc	8	19	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111746138	T	T	111746138	5	4	196	1	0	0	0	0	0	0	1	0	4098	1275	44	3	1209	3	CUX2	12	111746138	Splice_Site	SNP	G	TCGA-67-3773-01A-01W-0928-08	28494977	111746138	22105757	156	157419											
C12orf51	283450	broad.mit.edu	37	chr12	112666073	112666074	+	Intron	INS	-	G	G													aggcaatgcctgatggcggtINSgggggggcatggcaaaaagt							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112666074	G	G	112666073	6	5	196	0	1	1	1	0	0	0	0	0	1709	1711	59	0		0	C12orf51	12	112666073	Intron	INS	-	TCGA-67-3773-01A-01W-0928-08	919935	112666073	21185822	157	157420											
TPCN1	53373	broad.mit.edu	37	chr12	113723680	113723680	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggctgctgccgatggattCcttctgtccacagtctatgg	13	11	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113723680	A	A	113723680	1	1	196	0	1	0	0	0	0	0	0	0	16519	870	30	3		3	TPCN1	12	113723680	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	1057607	113723680	20128215	158	157421											
NOS1	4842	broad.mit.edu	37	chr12	117715715	117715715	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgggcaaagaggggcActgggcaaacccactcaccc	15	13	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117715715	G	G	117715715	1	3	196	0	1	0	0	0	0	0	0	0	10636	174	6	5		5	NOS1	12	117715715	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	3992035	117715715	16136180	159	157422											
PRKAB1	5564	broad.mit.edu	37	chr12	120110200	120110201	+	Frame_Shift_Ins	INS	-	G	G													ccaacggtgtttcgatggacINSggggggcggaaaggaagttt					rs115821895	byFrequency;by1000genomes	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120110201	G	G	120110200	7	5	196	1	0	1	1	0	0	0	0	0	12601	536	19	0	260	0	PRKAB1	12	120110200	Frame_Shift_Ins	INS	-	TCGA-67-3773-01A-01W-0928-08	2394485	120110200	13741695	160	157423											
TCTN2	79867	broad.mit.edu	37	chr12	124156732	124156732	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaggcccccagctagGgtttctgcagtgctctcttt	12	11	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124156732	A	A	124156732	1	1	196	0	1	0	0	0	0	0	0	0	15845	1247	43	4		4	TCTN2	12	124156732	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	4046532	124156732	9695163	161	157424											
DNAH10	196385	broad.mit.edu	37	chr12	124337911	124337911	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttagggaggtaggggccacGtgctggaacattctctggtt	15	8	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124337911	C	C	124337911	1	2	196	0	1	0	0	0	0	0	0	0	4638	1160	40	4		4	DNAH10	12	124337911	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	181179	124337911	9513984	162	157425											
SPATA13	221178	broad.mit.edu	37	chr13	24860373	24860373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcagtgatggcaacgtgGtctgcgcagaagccctgtgg	15	9	2	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24860373	T	T	24860373	3	4	196	1	0	0	0	0	1	0	0	0	15116	1261	44	3	2341	3	SPATA13	13	24860373	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08		24860373	90309505	163	157426											
NBEA	26960	broad.mit.edu	37	chr13	36129238	36129238	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttccttaatactattgcAggtaagatgtctcattcttt	6	7	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36129238	T	T	36129238	2	4	196	1	0	0	0	0	0	0	0	1	10281	202	7	5		5	NBEA	13	36129238	Silent	SNP	A	TCGA-67-3773-01A-01W-0928-08	11268865	36129238	79040640	164	157427											
SPG20	23111	broad.mit.edu	37	chr13	36909408	36909408	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actccccagaatctgttccaTaggatacagtgtagtgacct	8	11	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36909408	C	C	36909408	3	2	196	1	0	0	0	0	1	0	0	0	15160	1406	49	5	1472	5	SPG20	13	36909408	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	780170	36909408	78260470	165	157428											
FREM2	341640	broad.mit.edu	37	chr13	39357095	39357095	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccactatgttattctaaaGaatattcaagggggaaaaat	7	6	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39357095	T	T	39357095	1	4	196	0	1	0	0	0	0	0	0	0	6105	957	33	3		3	FREM2	13	39357095	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	2447687	39357095	75812783	166	157429											
ATP7B	540	broad.mit.edu	37	chr13	52534313	52534313	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtacacaagataaagaagaTgagatttagaatggacagtc	11	4	0	5			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52534313	C	C	52534313	3	2	196	1	0	0	0	0	1	0	0	0	1195	1464	51	5	2365	5	ATP7B	13	52534313	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	13177218	52534313	62635565	167	157430											
CLYBL	171425	broad.mit.edu	37	chr13	100543525	100543525	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcacagaaaggaaacctAtaatttcgagtattctttca	7	7	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100543525	G	G	100543525	1	3	196	0	1	0	0	0	0	0	0	0	3605	464	16	5		5	CLYBL	13	100543525	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	48009212	100543525	14626353	168	157431											
PLEK2	26499	broad.mit.edu	37	chr14	67854239	67854239	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctgctttcatcttgaaccAgcagaaagtcaactgagaca	8	10	4	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67854239	T	T	67854239	1	4	196	0	1	0	0	0	0	0	0	0	12149	203	7	5		5	PLEK2	14	67854239	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08		67854239	39495301	169	157432											
FCF1	51077	broad.mit.edu	37	chr14	75182766	75182766	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccataaaagccaaactggacTtagtgcagtcaatgatggac	9	9	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75182766	G	G	75182766	3	3	196	1	0	0	0	0	1	0	0	0	5834	1606	56	5	270	5	FCF1	14	75182766	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	7328527	75182766	32166774	170	157433											
KIAA1409	57578	broad.mit.edu	37	chr14	94173015	94173015	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctgggttgcccgtgaaaaGaaataaactaaaacctcttg	8	10	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94173015	T	T	94173015	1	4	196	0	1	0	0	0	0	0	0	0	8300	957	33	3		3	KIAA1409	14	94173015	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	18990249	94173015	13176525	171	157434											
AHNAK2	113146	broad.mit.edu	37	chr14	105416019	105416019	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttaacatctgtctggggGcccttgaggtccactttggg	12	12	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105416019	A	A	105416019	2	1	196	1	0	0	0	0	0	0	0	1	415	1190	42	4		4	AHNAK2	14	105416019	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	11243004	105416019	1933521	172	157435											
TGM5	9333	broad.mit.edu	37	chr15	43548676	43548676	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatttagttagcgttggtCagcagttctaggtgaagctc	12	8	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43548676	A	A	43548676	1	1	196	0	1	0	0	0	0	0	0	0	15956	841	29	3		3	TGM5	15	43548676	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08		43548676	58982716	173	157436											
SEMA6D	80031	broad.mit.edu	37	chr15	47873557	47873557	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcagaactacatataaaCaagcaaactgccaaataaac	5	9	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47873557	G	G	47873557	1	3	196	0	1	0	0	0	0	0	0	0	14155	493	17	4		4	SEMA6D	15	47873557	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	4324881	47873557	54657835	174	157437											
THSD4	79875	broad.mit.edu	37	chr15	72037537	72037537	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagcatgaagccgacccccGaggaggagccctgcaacatc	11	16	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72037537	A	A	72037537	3	1	196	1	0	0	0	0	1	0	0	0	16001	1059	37	4	2041	4	THSD4	15	72037537	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	24163980	72037537	30493855	175	157438											
IQGAP1	8826	broad.mit.edu	37	chr15	90992935	90992935	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtgttattgaagggtcTgaggttagcttctgtcatcg	12	6	3	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90992935	A	A	90992935	1	1	196	0	1	0	0	0	0	0	0	0	7884	1595	55	5		5	IQGAP1	15	90992935	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08	18955398	90992935	11538457	176	157439											
CHD2	1106	broad.mit.edu	37	chr15	93489385	93489389	+	Frame_Shift_Del	DEL	ATTGC	-	-													cattggaaagaaattccagaAttgcattgacagcttccaca							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93489389	-	-	93489385	7	5	196	1	0	1	0	1	0	0	0	0	3356	101	4	0	1358	0	CHD2	15	93489385	Frame_Shift_Del	DEL	ATTGC	TCGA-67-3773-01A-01W-0928-08	2496450	93489385	9042007	177	157440											
ABCA3	21	broad.mit.edu	37	chr16	2328266	2328266	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccggtgctgaaacttccagTaacccacagacccaggctct	8	16	1	2	rs161425	by1000genomes	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2328266	C	C	2328266	1	2	196	0	1	0	0	0	0	0	0	0	33	1653	57	5		5	ABCA3	16	2328266	Intron	SNP	T	TCGA-67-3773-01A-01W-0928-08		2328266	88026487	178	157441											
ABCC1	4363	broad.mit.edu	37	chr16	16215759	16215759	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttacgtctagatgttctcCagcacagccctgccctggga	11	13	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16215759	T	T	16215759	1	4	196	0	1	0	0	0	0	0	0	0	49	609	21	4		4	ABCC1	16	16215759	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	13887493	16215759	74138994	179	157442											
LAT	27040	broad.mit.edu	37	chr16	28996766	28996766	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccatcctggtcccctgcGtgctggggctcctgctgctg	14	15	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28996766	A	A	28996766	3	1	196	1	0	0	0	0	1	0	0	0	8716	1145	40	4	142	4	LAT	16	28996766	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	12781007	28996766	61357987	180	157443											
TMCO7	79613	broad.mit.edu	37	chr16	69056932	69056932	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgttttcacttggacctaCgatgcatcttgagattggga	11	8	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69056932	T	T	69056932	1	4	196	0	1	0	0	0	0	0	0	0	16124	551	19	4		4	TMCO7	16	69056932	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	40060166	69056932	21297821	181	157444											
GLG1	2734	broad.mit.edu	37	chr16	74526922	74526922	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcacgcgatcgcggaagGttttccacattgcaccggta	11	12	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74526922	A	A	74526922	2	1	196	1	0	0	0	0	0	0	0	1	6500	1252	44	4		4	GLG1	16	74526922	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	5469990	74526922	15827831	182	157445											
CBFA2T3	863	broad.mit.edu	37	chr16	88958851	88958851	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgttgggtgtgcacggtGcaccattgatggctgttggt	16	8	0	1	rs143862946		TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88958851	A	A	88958851	3	1	196	1	0	0	0	0	1	0	0	0	2724	1319	46	4	1575	4	CBFA2T3	16	88958851	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	14431929	88958851	1395902	183	157446											
PIK3R6	146850	broad.mit.edu	37	chr17	8726638	8726638	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctggtgaccagtgtttcCccagagcctgggtatttaat	12	10	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8726638	T	T	8726638	1	4	196	0	1	0	0	0	0	0	0	0	12018	638	22	4		4	PIK3R6	17	8726638	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08		8726638	72468572	184	157447											
MYH2	4620	broad.mit.edu	37	chr17	10443185	10443185	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaggaaaattcctgggtaAcaagttaagaatgtgatttt	9	5	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10443185	G	G	10443185	1	3	196	0	1	0	0	0	0	0	0	0	10129	58	2	5		5	MYH2	17	10443185	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	1716547	10443185	70752025	185	157448											
ZNF287	57336	broad.mit.edu	37	chr17	16470691	16470691	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccaccagagtcactgcttCctcgctgctctctggatact	7	16	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16470691	T	T	16470691	3	4	196	1	0	0	0	0	1	0	0	0	17951	864	30	4	1950	4	ZNF287	17	16470691	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	6027506	16470691	64724519	186	157449											
GSDMB	55876	broad.mit.edu	37	chr17	38066035	38066035	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttatagctgagatggccctGagagatctggctccaaaatt	10	8	1	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38066035	A	A	38066035	4	1	196	1	0	0	0	0	0	1	0	0	6883	1299	45	4	732	4	GSDMB	17	38066035	Nonsense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	21595344	38066035	43129175	187	157450											
KIF2B	84643	broad.mit.edu	37	chr17	51902309	51902309	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatattgatttttgcattGcccggtctttgtccattttg	8	7	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51902309	T	T	51902309	3	4	196	1	0	0	0	0	1	0	0	0	8368	1319	46	3	1917	3	KIF2B	17	51902309	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	13836274	51902309	29292901	188	157451											
HELZ	9931	broad.mit.edu	37	chr17	65120247	65120247	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caataattaaaatctaaaaaCtgtgagtctataattaataa	3	4	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65120247	A	A	65120247	1	1	196	0	1	0	0	0	0	0	0	0	7116	580	20	3		3	HELZ	17	65120247	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	13217938	65120247	16074963	189	157452											
ABCA9	10350	broad.mit.edu	37	chr17	67012369	67012369	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacttatcatggcacagtAtaaatgagatataattatac	5	5	1	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67012369	G	G	67012369	1	3	196	0	1	0	0	0	0	0	0	0	39	464	16	5		5	ABCA9	17	67012369	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	1892122	67012369	14182841	190	157453											
C17orf28	283987	broad.mit.edu	37	chr17	72958448	72958448	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagtcctggggacaggcCaggaagaagccgggttaggg	19	9	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72958448	A	A	72958448	1	1	196	0	1	0	0	0	0	0	0	0	1869	609	21	2		2	C17orf28	17	72958448	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	5946079	72958448	8236762	191	157454											
RNF213	57674	broad.mit.edu	37	chr17	78359234	78359234	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagacatgcttgtgactgcaCaaagcaggaaagatgggctc	12	9	0	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78359234	T	T	78359234	1	4	196	0	1	0	0	0	0	0	0	0	13588	493	17	4		4	RNF213	17	78359234	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	5400786	78359234	2835976	192	157455											
BAHCC1	57597	broad.mit.edu	37	chr17	79384943	79384943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgagtccattcatcacGtgcctgcaggtgcctgtgtc	12	12	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384943	A	A	79384943	1	1	196	0	1	0	0	0	0	0	0	0	1301	1160	40	4		4	BAHCC1	17	79384943	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	1025709	79384943	1810267	193	157456											
HEXDC	284004	broad.mit.edu	37	chr17	80399755	80399755	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttcagcacatccagcccGcagcgctcaggtgaggccct	12	15	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80399755	A	A	80399755	3	1	196	1	0	0	0	0	1	0	0	0	7142	1074	38	4	1370	4	HEXDC	17	80399755	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	1014812	80399755	795455	194	157457											
PTPRM	5797	broad.mit.edu	37	chr18	7926632	7926632	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccagtttgctaccttccAgtgcagtgccatcggcagga	12	12	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7926632	G	G	7926632	3	3	196	1	0	0	0	0	1	0	0	0	12914	188	7	5	632	5	PTPRM	18	7926632	Missense_Mutation	SNP	A	TCGA-67-3773-01A-01W-0928-08		7926632	70150616	195	157458											
C18orf45	85019	broad.mit.edu	37	chr18	20878091	20878091	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacccctgagctgcctggcGcccacatacgcagggcaagg	14	15	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20878091	A	A	20878091	1	1	196	0	1	0	0	0	0	0	0	0	1921	1102	38	4		4	C18orf45	18	20878091	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	12951459	20878091	57199157	196	157459											
ASXL3	80816	broad.mit.edu	37	chr18	31323885	31323885	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacctctccactagctctgTcttgattcccccaatgggaa	6	14	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31323885	C	C	31323885	3	2	196	1	0	0	0	0	1	0	0	0	1072	1667	58	5	4119	5	ASXL3	18	31323885	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	10445794	31323885	46753363	197	157460											
NOL4	8715	broad.mit.edu	37	chr18	31523045	31523045	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacctgctgtctctccagaCgcatcctcttggcggcattt	9	14	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31523045	A	A	31523045	3	1	196	1	0	0	0	0	1	0	0	0	10619	536	19	3	402	3	NOL4	18	31523045	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	199160	31523045	46554203	198	157461											
SETBP1	26040	broad.mit.edu	37	chr18	42532619	42532619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccacgtaaagatgtccgGtgcagctaagcataaagcca	9	12	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42532619	T	T	42532619	3	4	196	1	0	0	0	0	1	0	0	0	14242	1261	44	3	3517	3	SETBP1	18	42532619	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	11009574	42532619	35544629	199	157462											
KIAA1632	57724	broad.mit.edu	37	chr18	43493621	43493621	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acgggtgaatccatcagcatCaaagtgtaagccaccttcta	8	11	3	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43493621	A	A	43493621	1	1	196	0	1	0	0	0	0	0	0	0	8319	841	29	3		3	KIAA1632	18	43493621	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	961002	43493621	34583627	200	157463											
RNF165	494470	broad.mit.edu	37	chr18	44030342	44030342	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcccagcagacacacctcCgccgtacgggagagctatga	10	14	0	3	rs145234061	byFrequency	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44030342	T	T	44030342	2	4	196	1	0	0	0	0	0	0	0	1	13567	639	23	4		4	RNF165	18	44030342	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08	536721	44030342	34046906	201	157464											
CDH20	28316	broad.mit.edu	37	chr18	59157904	59157904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcggacaccccaacaccaCaaggtgaattagaagcactc	7	14	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59157904	A	A	59157904	3	1	196	1	0	0	0	0	1	0	0	0	3136	479	17	3	120	3	CDH20	18	59157904	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	15127562	59157904	18919344	202	157465											
GALR1	2587	broad.mit.edu	37	chr18	74980512	74980512	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaccgcctcctcctcctcCtcctcctcctcctcttcttc	1	24	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74980512	T	T	74980512	1	4	196	0	1	0	0	0	0	0	0	0	6289	696	24	4		4	GALR1	18	74980512	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	15822608	74980512	3096736	203	157466											
THOP1	7064	broad.mit.edu	37	chr19	2794929	2794929	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtgagggggccctgcgggGagtgcaaatagcctcccaag	17	10	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2794929	T	T	2794929	1	4	196	0	1	0	0	0	0	0	0	0	15994	1189	41	3		3	THOP1	19	2794929	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08		2794929	56334054	204	157467											
STAP2	55620	broad.mit.edu	37	chr19	4327149	4327149	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcgtagtcctcgtctaaCaggaatggcaccagcgcctt	9	13	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4327149	A	A	4327149	2	1	196	1	0	0	0	0	0	0	0	1	15371	465	17	3		3	STAP2	19	4327149	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08	1532220	4327149	54801834	205	157468											
ACSBG2	81616	broad.mit.edu	37	chr19	6185748	6185748	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtaccagcacgaaggCcacccccagttcctcacctt	8	18	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6185748	G	G	6185748	1	3	196	0	1	0	0	0	0	0	0	0	174	754	26	4		4	ACSBG2	19	6185748	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	1858599	6185748	52943235	206	157469											
INSR	3643	broad.mit.edu	37	chr19	7117440	7117440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcggggcagaaggacaCgtcctgggtgagtctggggg	20	8	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7117440	A	A	7117440	1	1	196	0	1	0	0	0	0	0	0	0	7843	551	19	3		3	INSR	19	7117440	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	931692	7117440	52011543	207	157470											
RETN	56729	broad.mit.edu	37	chr19	7734143	7734143	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctactccctccatgggcCggatcttccccacagggcag	9	17	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7734143	T	T	7734143	1	4	196	0	1	0	0	0	0	0	0	0	13344	667	23	4		4	RETN	19	7734143	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	616703	7734143	51394840	208	157471											
FBXL12	54850	broad.mit.edu	37	chr19	9931118	9931118	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccctctggacaagtggcTggccctgcactcatgagggc	14	13	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9931118	G	G	9931118	1	3	196	0	1	0	0	0	0	0	0	0	5765	1595	55	5		5	FBXL12	19	9931118	5'Flank	SNP	T	TCGA-67-3773-01A-01W-0928-08	2196975	9931118	49197865	209	157472											
CYP4F3	4051	broad.mit.edu	37	chr19	15758117	15758117	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatgaagattttcaatgagAgtgtgaacatcatgcatgtg	10	4	2	4			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15758117	T	T	15758117	3	4	196	1	0	0	0	0	1	0	0	0	4223	304	11	5	522	5	CYP4F3	19	15758117	Missense_Mutation	SNP	A	TCGA-67-3773-01A-01W-0928-08	5826999	15758117	43370866	210	157473											
CYP4F12	66002	broad.mit.edu	37	chr19	15789113	15789113	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaactcgacccagatgTcggccacctattcccagggc	10	14	0	3			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15789113	A	A	15789113	3	1	196	1	0	0	0	0	1	0	0	0	4220	1667	58	5	247	5	CYP4F12	19	15789113	Missense_Mutation	SNP	T	TCGA-67-3773-01A-01W-0928-08	30996	15789113	43339870	211	157474											
ZNF43	7594	broad.mit.edu	37	chr19	21991490	21991491	+	Missense_Mutation	DNP	CC	AA	AA													cacatttgtagggtttctctCcagtatgaattctgttatgt							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21991491	AA	AA	21991490	3	1	196	1	0	0	0	0	1	0	0	0	18030	855	30	3	1084	3	ZNF43	19	21991490	Missense_Mutation	DNP	CC	TCGA-67-3773-01A-01W-0928-08	6202377	21991490	37137493	212	157475											
ZNF208	7757	broad.mit.edu	37	chr19	22191531	22191531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaaatggaagctgcgttGggtaaagacaacactaatat	10	6	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22191531	T	T	22191531	1	4	196	0	1	0	0	0	0	0	0	0	17892	1363	47	2		2	ZNF208	19	22191531	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	200041	22191531	36937452	213	157476											
GRAMD1A	57655	broad.mit.edu	37	chr19	35502353	35502354	+	Intron	DEL	CT	-	-													gctccccaacctgctcacacCtctctctctctctctccctg							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35502354	-	-	35502353	6	5	196	0	1	1	0	1	0	0	0	0	6813	696	24	0		0	GRAMD1A	19	35502353	Intron	DEL	CT	TCGA-67-3773-01A-01W-0928-08	13310822	35502353	23626630	214	157477											
KRTDAP	388533	broad.mit.edu	37	chr19	35979505	35979505	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaagctctctaccaaggCgtttatcccctctgtgatga	8	12	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35979505	T	T	35979505	1	4	196	0	1	0	0	0	0	0	0	0	8652	783	27	4		4	KRTDAP	19	35979505	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	477152	35979505	23149478	215	157478											
MAP4K1	11184	broad.mit.edu	37	chr19	39086484	39086484	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggcaaggcccagagggGctcagggggttctgagaagc	19	9	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39086484	A	A	39086484	1	1	196	0	1	0	0	0	0	0	0	0	9351	1218	42	4		4	MAP4K1	19	39086484	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	3106979	39086484	20042499	216	157479											
PAF1	54623	broad.mit.edu	37	chr19	39879075	39879075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctttgttcttcacgttcCagttgtactcccgagcaatt	7	11	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39879075	A	A	39879075	3	1	196	1	0	0	0	0	1	0	0	0	11477	595	21	2	721	2	PAF1	19	39879075	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	792591	39879075	19249908	217	157480											
PRR19	284338	broad.mit.edu	37	chr19	42814722	42814723	+	Frame_Shift_Ins	INS	-	G	G													gccaccccctcctcggccctINSggggggttggcctccctcag							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42814723	G	G	42814722	7	5	196	1	0	1	1	0	0	0	0	0	12697	1580	55	0	907	0	PRR19	19	42814722	Frame_Shift_Ins	INS	-	TCGA-67-3773-01A-01W-0928-08	2935647	42814722	16314261	218	157481											
PSG3	5671	broad.mit.edu	37	chr19	43241393	43241393	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gggggatgaaacgtgggtgtCagcctctgaaggacaaggga	18	6	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43241393	G	G	43241393	1	3	196	0	1	0	0	0	0	0	0	0	12762	841	29	4		4	PSG3	19	43241393	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	426671	43241393	15887590	219	157482											
LILRB1	10859	broad.mit.edu	37	chr19	55144063	55144063	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttccttcagctcgctggCgcacagccccaggctgggct	12	16	1	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55144063	T	T	55144063	2	4	196	1	0	0	0	0	0	0	0	1	8862	755	27	4		4	LILRB1	19	55144063	Silent	SNP	C	TCGA-67-3773-01A-01W-0928-08	11902670	55144063	3984920	220	157483											
ZSCAN1	284312	broad.mit.edu	37	chr19	58551855	58551855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcggtcgaaccccaggactgGagtttcggtgaggaggaaga	16	8	0	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58551855	T	T	58551855	3	4	196	1	0	0	0	0	1	0	0	0	18355	1183	41	3	414	3	ZSCAN1	19	58551855	Missense_Mutation	SNP	G	TCGA-67-3773-01A-01W-0928-08	3407792	58551855	577128	221	157484											
RALGAPB	57148	broad.mit.edu	37	chr20	37163694	37163694	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttccctccctgtgggatGtggcattggggttatatcct	12	9	0	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37163694	A	A	37163694	1	1	196	0	1	0	0	0	0	0	0	0	13123	1392	48	4		4	RALGAPB	20	37163694	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08		37163694	25861826	222	157485											
RGS19	10287	broad.mit.edu	37	chr20	62708014	62708014	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatctggggaaaagtggGgctacctcagctttcaggtc	14	8	3	1	rs41302950	by1000genomes	TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62708014	A	A	62708014	1	1	196	0	1	0	0	0	0	0	0	0	13410	1247	43	4		4	RGS19	20	62708014	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	25544320	62708014	317506	223	157486											
TPTE	7179	broad.mit.edu	37	chr21	10942878	10942878	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaatgggtcccaaaacAcaaaatatttttgtgaatca	6	7	2	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10942878	T	T	10942878	1	4	196	0	1	0	0	0	0	0	0	0	16554	174	6	5		5	TPTE	21	10942878	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08		10942878	37187017	224	157487											
GART	2618	broad.mit.edu	37	chr21	34883584	34883584	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcgtgcaaccacactgccAatcacccaggcttcttcctt	6	17	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34883584	G	G	34883584	2	3	196	1	0	0	0	0	0	0	0	1	6305	126	5	5		5	GART	21	34883584	Silent	SNP	A	TCGA-67-3773-01A-01W-0928-08	23940706	34883584	13246311	225	157488											
IGSF5	150084	broad.mit.edu	37	chr21	41143264	41143264	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgaccttgattttgggtggGgatgataaggccaatcacat	13	7	1	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41143264	A	A	41143264	1	1	196	0	1	0	0	0	0	0	0	0	7672	1247	43	4		4	IGSF5	21	41143264	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	6259680	41143264	6986631	226	157489											
POFUT2	23275	broad.mit.edu	37	chr21	46697007	46697007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagatgtctgctcctgaaCtcgtctcccacctcccgcag	8	16	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46697007	A	A	46697007	3	1	196	1	0	0	0	0	1	0	0	0	12279	564	20	3	688	3	POFUT2	21	46697007	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	5553743	46697007	1432888	227	157490											
OR11H1	81061	broad.mit.edu	37	chr22	16449040	16449040	+	Frame_Shift_Del	DEL	G	-	-													acagccaaatgagacccacaGgtagagaaggccttatgtct							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16449040	-	-	16449040	7	5	196	1	0	1	0	1	0	0	0	0	11020	987	35	0	217	0	OR11H1	22	16449040	Frame_Shift_Del	DEL	G	TCGA-67-3773-01A-01W-0928-08		16449040	34855526	228	157491											
C22orf43	51233	broad.mit.edu	37	chr22	23964271	23964271	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagaagacaaagaaagattGtcttacctgggcatcatcat	8	7	3	4			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23964271	A	A	23964271	1	1	196	0	1	0	0	0	0	0	0	0	2172	1392	48	4		4	C22orf43	22	23964271	Intron	SNP	G	TCGA-67-3773-01A-01W-0928-08	7515231	23964271	27340295	229	157492											
NPTXR	23467	broad.mit.edu	37	chr22	39218644	39218644	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccctccccttgcagacatcGaaggcagcctttgttgcacc	9	16	0	1	rs145163836		TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39218644	A	A	39218644	2	1	196	1	0	0	0	0	0	0	0	1	10699	1049	37	4		4	NPTXR	22	39218644	Silent	SNP	G	TCGA-67-3773-01A-01W-0928-08	15254373	39218644	12085922	230	157493											
NHP2L1	4809	broad.mit.edu	37	chr22	42076225	42076225	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcctttaacattcccccAgagcatcctgtggctgcctt	9	14	0	1			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42076225	C	C	42076225	1	2	196	0	1	0	0	0	0	0	0	0	10505	203	7	5		5	NHP2L1	22	42076225	Intron	SNP	A	TCGA-67-3773-01A-01W-0928-08	2857581	42076225	9228341	231	157494											
PRR5-ARHGAP8	553158	broad.mit.edu	37	chr22	45121099	45121099	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgtggtctgggactcaCtcttgtctcacctcccaccc	9	17	4	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45121099	T	T	45121099	1	4	196	0	1	0	0	0	0	0	0	0	12707	580	20	4		4	PRR5-ARHGAP8	22	45121099	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	3044874	45121099	6183467	232	157495											
PCDH11X	27328	broad.mit.edu	37	chrX	91770429	91770429	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggaagttgctgggggacCggtaggcgtcattcaggttc	16	8	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91770429	A	A	91770429	1	1	196	0	1	0	0	0	0	0	0	0	11602	667	23	1		1	PCDH11X	23	91770429	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08		91770429	63500131	233	157496											
NXF5	55998	broad.mit.edu	37	chrX	101087499	101087499	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcttttacccccttgatatCcagacctcacctggagcata	6	14	2	2			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101087499	G	G	101087499	1	3	196	0	1	0	0	0	0	0	0	0	10881	870	30	4		4	NXF5	23	101087499	Intron	SNP	C	TCGA-67-3773-01A-01W-0928-08	9317070	101087499	54183061	234	157497											
IL13RA2	3598	broad.mit.edu	37	chrX	114242517	114242517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccagcattgtttatcactCcactcactccaaattccgtc	3	16	2	0			TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114242517	A	A	114242517	3	1	196	1	0	0	0	0	1	0	0	0	7700	856	30	3	179	3	IL13RA2	23	114242517	Missense_Mutation	SNP	C	TCGA-67-3773-01A-01W-0928-08	13155018	114242517	41028043	235	157498											
GLUD2	2747	broad.mit.edu	37	chrX	120182373	120182374	+	Missense_Mutation	DNP	GG	TT	TT													ctggccgtggtgtcttccatGggattgaaaacttcatcaat							TCGA-67-3773-01A-01W-0928-08	TCGA-67-3773-10A-01W-0928-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	120182374	TT	TT	120182373	3	4	196	1	0	0	0	0	1	0	0	0	6541	1348	47	2	837	2	GLUD2	23	120182373	Missense_Mutation	DNP	GG	TCGA-67-3773-01A-01W-0928-08	5939856	120182373	35088187	236	157499											
PRDM16	63976	broad.mit.edu	37	chr1	3342332	3342332	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgggccacgcggggtgGggcagcccccagagcaccca	17	15	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3342332	T	T	3342332	1	4	197	0	1	0	0	0	0	0	0	0	12563	1247	43	2		2	PRDM16	1	3342332	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01		3342332	245908289	1	157500											
CCDC27	148870	broad.mit.edu	37	chr1	3677924	3677924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccaggaggagagggaggCcctgaagatgcagctgaaat	16	8	0	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3677924	T	T	3677924	3	4	197	1	0	0	0	0	1	0	0	0	2828	739	26	4	809	4	CCDC27	1	3677924	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	335592	3677924	245572697	2	157501											
PRAMEF1	65121	broad.mit.edu	37	chr1	12855612	12855612	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagaaccccttggagaacTtggaattaacttatggctac	8	10	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12855612	A	A	12855612	3	1	197	1	0	0	0	0	1	0	0	0	12526	1606	56	5	902	5	PRAMEF1	1	12855612	Missense_Mutation	SNP	T	TCGA-67-3774-01A-01D-1040-01	9177688	12855612	236395009	3	157502											
MYOM3	127294	broad.mit.edu	37	chr1	24418874	24418874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaggcccttcccactcCcgcccagcatcctcttctca	6	20	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24418874	T	T	24418874	1	4	197	0	1	0	0	0	0	0	0	0	10187	638	22	4		4	MYOM3	1	24418874	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	11563262	24418874	224831747	4	157503											
SLC30A2	7780	broad.mit.edu	37	chr1	26372400	26372400	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccatgcagtcccgcgcCgagtcccggcagccgcgcag	13	19	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26372400	A	A	26372400	1	1	197	0	1	0	0	0	0	0	0	0	14669	667	23	1		1	SLC30A2	1	26372400	5'UTR	SNP	C	TCGA-67-3774-01A-01D-1040-01	1953526	26372400	222878221	5	157504											
CCDC21	64793	broad.mit.edu	37	chr1	26603225	26603225	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagggccatgaccccaAtctctccctgctcctgggca	10	18	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26603225	G	G	26603225	3	3	197	1	0	0	0	0	1	0	0	0	2823	101	4	5	2148	5	CCDC21	1	26603225	Missense_Mutation	SNP	A	TCGA-67-3774-01A-01D-1040-01	230825	26603225	222647396	6	157505											
FAM46B	115572	broad.mit.edu	37	chr1	27338889	27338894	+	Intron	DEL	TCCTCT	-	-													cccacatcccccgcctggcgTcctctcacctgcacgatctg							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27338894	-	-	27338889	6	5	197	0	1	1	0	1	0	0	0	0	5617	1682	58	0		0	FAM46B	1	27338889	Intron	DEL	TCCTCT	TCGA-67-3774-01A-01D-1040-01	735664	27338889	221911732	7	157506											
KPNA6	23633	broad.mit.edu	37	chr1	32573666	32573666	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagatccgccatattgtctActgaaagctgccgctgaagc	9	12	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32573666	T	T	32573666	1	4	197	0	1	0	0	0	0	0	0	0	8505	406	14	5		5	KPNA6	1	32573666	5'UTR	SNP	A	TCGA-67-3774-01A-01D-1040-01	5234777	32573666	216676955	8	157507											
RRAGC	64121	broad.mit.edu	37	chr1	39305178	39305178	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcacgtggcatccgacccTggagtgaagagtaagctggc	14	10	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39305178	C	C	39305178	1	2	197	0	1	0	0	0	0	0	0	0	13785	1595	55	5		5	RRAGC	1	39305178	3'UTR	SNP	T	TCGA-67-3774-01A-01D-1040-01	6731512	39305178	209945443	9	157508											
ERMAP	114625	broad.mit.edu	37	chr1	43296552	43296552	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggaggtgaggtggctgCggtccccattcccgcagcgc	15	14	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43296552	T	T	43296552	3	4	197	1	0	0	0	0	1	0	0	0	5276	759	27	4	205	4	ERMAP	1	43296552	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	3991374	43296552	205954069	10	157509											
SPATA6	54558	broad.mit.edu	37	chr1	48764354	48764354	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcattgagaaattgacaCggacactaatgaggtttatc	8	6	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48764354	A	A	48764354	1	1	197	0	1	0	0	0	0	0	0	0	15129	551	19	3		3	SPATA6	1	48764354	3'UTR	SNP	C	TCGA-67-3774-01A-01D-1040-01	5467802	48764354	200486267	11	157510											
LASS2	29956	broad.mit.edu	37	chr1	150941010	150941010	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggaagggatatgagtaaGgtatctagcttgctgggaag	17	3	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150941010	C	C	150941010	1	2	197	0	1	0	0	0	0	0	0	0	8711	1015	35	4		4	LASS2	1	150941010	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	102176656	150941010	98309611	12	157511											
ASH1L	55870	broad.mit.edu	37	chr1	155327012	155327012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttggcttaagacaaaagaAagtggatcaacaatatagaa	8	5	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155327012	G	G	155327012	1	3	197	0	1	0	0	0	0	0	0	0	1045	29	1	5		5	ASH1L	1	155327012	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	4386002	155327012	93923609	13	157512											
OR10J1	26476	broad.mit.edu	37	chr1	159410483	159410483	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtcaaagatgctctgtGcagggctgttggtgggaagt	17	5	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159410483	A	A	159410483	3	1	197	1	0	0	0	0	1	0	0	0	11004	1319	46	4	937	4	OR10J1	1	159410483	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	4083471	159410483	89840138	14	157513											
TNN	63923	broad.mit.edu	37	chr1	175097855	175097855	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctgcaggtgtactgtgaCatggaaacggacggaggtgg	16	9	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175097855	G	G	175097855	3	3	197	1	0	0	0	0	1	0	0	0	16446	477	17	4	3357	4	TNN	1	175097855	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	15687372	175097855	74152766	15	157514											
RGS8	85397	broad.mit.edu	37	chr1	182617161	182617161	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaccagagtgatgaggCtcagtttagtataagaaagt	13	6	1	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182617161	A	A	182617161	1	1	197	0	1	0	0	0	0	0	0	0	13421	812	28	3		3	RGS8	1	182617161	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	7519306	182617161	66633460	16	157515											
NFASC	23114	broad.mit.edu	37	chr1	204971720	204971720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgattgaggtttctgttccCcaggcaaccatacgaaaaaa	8	10	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204971720	A	A	204971720	1	1	197	0	1	0	0	0	0	0	0	0	10454	638	22	2		2	NFASC	1	204971720	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	22354559	204971720	44278901	17	157516											
TMEM63A	9725	broad.mit.edu	37	chr1	226034929	226034929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagggctgtcagcaaatggAtttgtgcttggcctggacag	15	7	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226034929	G	G	226034929	1	3	197	0	1	0	0	0	0	0	0	0	16313	348	12	5		5	TMEM63A	1	226034929	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	21063209	226034929	23215692	18	157517											
ACBD3	64746	broad.mit.edu	37	chr1	226376669	226376669	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatcctgtcacaaacacatAtagcacacatggaaccacca	5	13	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226376669	G	G	226376669	1	3	197	0	1	0	0	0	0	0	0	0	123	464	16	5		5	ACBD3	1	226376669	5'Flank	SNP	A	TCGA-67-3774-01A-01D-1040-01	341740	226376669	22873952	19	157518											
PARP1	142	broad.mit.edu	37	chr1	226549183	226549183	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accacagggaggtcttaaaaTtgaatttcagtttcagcaga	9	7	3	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	226549183	C	C	226549183	3	2	197	1	0	0	0	0	1	0	0	0	11548	1493	52	5	25	5	PARP1	1	226549183	Missense_Mutation	SNP	T	TCGA-67-3774-01A-01D-1040-01	172514	226549183	22701438	20	157519											
SNAP47	116841	broad.mit.edu	37	chr1	227954801	227954801	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtaagatgtccccagtGccatgccagccagcgctgtg	12	14	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227954801	C	C	227954801	1	2	197	0	1	0	0	0	0	0	0	0	14946	1334	46	4		4	SNAP47	1	227954801	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	1405618	227954801	21295820	21	157520											
RYR2	6262	broad.mit.edu	37	chr1	237819148	237819148	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacaagaacttttcaaactgGcactgccttgcctgagtgca	8	11	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	237819148	C	C	237819148	3	2	197	1	0	0	0	0	1	0	0	0	13880	1203	42	4	8203	4	RYR2	1	237819148	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	9864347	237819148	11431473	22	157521											
TRIM58	25893	broad.mit.edu	37	chr1	248028173	248028173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggtccagcagagcaaggCcctgaaggagctggcggatg	17	10	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248028173	A	A	248028173	3	1	197	1	0	0	0	0	1	0	0	0	16656	739	26	3	693	3	TRIM58	1	248028173	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	10209025	248028173	1222448	23	157522											
COLEC11	78989	broad.mit.edu	37	chr2	3651804	3651804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagacagcccttccagGcaccaggagggctacacccc	11	18	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3651804	T	T	3651804	1	4	197	0	1	0	0	0	0	0	0	0	3743	1218	42	3		3	COLEC11	2	3651804	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01		3651804	239547569	24	157523											
ATAD2B	54454	broad.mit.edu	37	chr2	23985107	23985107	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttgcagagttgtgccaCacatccattggatttctttg	8	8	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23985107	A	A	23985107	2	1	197	1	0	0	0	0	0	0	0	1	1076	465	17	3		3	ATAD2B	2	23985107	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	20333303	23985107	219214266	25	157524											
GALNT14	79623	broad.mit.edu	37	chr2	31178571	31178571	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagagtggtgccctgggcGatgtcagcgccccgaatccg	15	13	2	1	rs145356432		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31178571	T	T	31178571	2	4	197	1	0	0	0	0	0	0	0	1	6274	1048	37	3		3	GALNT14	2	31178571	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	7193464	31178571	212020802	26	157525											
XDH	7498	broad.mit.edu	37	chr2	31598097	31598097	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaagccagctggtcactcCcatttccaagattcttgtgc	7	13	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31598097	G	G	31598097	1	3	197	0	1	0	0	0	0	0	0	0	17553	638	22	4		4	XDH	2	31598097	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	419526	31598097	211601276	27	157526											
PLEKHB2	55041	broad.mit.edu	37	chr2	131936104	131936104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctggtttcagatcccgaCgcactacagtatgatcacca	9	12	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131936104	A	A	131936104	1	1	197	0	1	0	0	0	0	0	0	0	12160	551	19	3		3	PLEKHB2	2	131936104	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	100338007	131936104	111263269	28	157527											
SCRN3	79634	broad.mit.edu	37	chr2	175292419	175292419	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatatgtatatgtgtttatCtttatatttttaattgttta	5	1	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175292419	G	G	175292419	1	3	197	0	1	0	0	0	0	0	0	0	14053	928	32	4		4	SCRN3	2	175292419	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	43356315	175292419	67906954	29	157528											
ORC2L	4999	broad.mit.edu	37	chr2	201814323	201814323	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctattctgaaaagaataAactttatttccaccacctgt	3	9	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201814323	C	C	201814323	2	2	197	1	0	0	0	0	0	0	0	1	11356	1	1	5		5	ORC2L	2	201814323	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01	26521904	201814323	41385050	30	157529											
SUMO1	7341	broad.mit.edu	37	chr2	203084879	203084887	+	Intron	DEL	TTACTCACT	-	-													gttcctacatgctattttaaTtactcacttatgagtatcca							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	203084887	-	-	203084879	6	5	197	0	1	1	0	1	0	0	0	0	15505	1508	52	0		0	SUMO1	2	203084879	Intron	DEL	TTACTCACT	TCGA-67-3774-01A-01D-1040-01	1270556	203084879	40114494	31	157530											
SPEG	10290	broad.mit.edu	37	chr2	220350217	220350217	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtaataagaggcctgctGggtgaggaccctcctcccct	12	13	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220350217	C	C	220350217	1	2	197	0	1	0	0	0	0	0	0	0	15154	1363	47	4		4	SPEG	2	220350217	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	17265338	220350217	22849156	32	157531											
WDR69	164781	broad.mit.edu	37	chr2	228750068	228750068	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtttatttctataggAattatgttggaatatgaaaa	8	1	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228750068	T	T	228750068	2	4	197	1	0	0	0	0	0	0	0	1	17446	260	9	5		5	WDR69	2	228750068	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01	8399851	228750068	14449305	33	157532											
NGEF	25791	broad.mit.edu	37	chr2	233839373	233839373	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttcggggttgtctctggcCttggctttgcttttgcgtct	13	10	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233839373	T	T	233839373	2	4	197	1	0	0	0	0	0	0	0	1	10489	680	24	4		4	NGEF	2	233839373	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	5089305	233839373	9360000	34	157533											
SAG	6295	broad.mit.edu	37	chr2	234235974	234235974	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggtaccatctgcatgtGggatggaggtcaaaggttga	16	6	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234235974	A	A	234235974	1	1	197	0	1	0	0	0	0	0	0	0	13919	1363	47	4		4	SAG	2	234235974	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	396601	234235974	8963399	35	157534											
PER2	8864	broad.mit.edu	37	chr2	239186473	239186473	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtccactggagccactGctcatgtccacatcttcctg	7	15	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239186473	A	A	239186473	2	1	197	1	0	0	0	0	0	0	0	1	11824	1310	46	4		4	PER2	2	239186473	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	4950499	239186473	4012900	36	157535											
CNTN4	152330	broad.mit.edu	37	chr3	3085393	3085393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaaaggatacaaagtagGtaatttcttttttgcaaagg	9	3	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3085393	T	T	3085393	1	4	197	0	1	0	0	0	0	0	0	0	3675	1276	44	3		3	CNTN4	3	3085393	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01		3085393	194937037	37	157536											
C3orf32	51066	broad.mit.edu	37	chr3	8675651	8675651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggggaccatgtgaacgGgtgcccagcgtgagaacggg	17	9	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8675651	T	T	8675651	1	4	197	0	1	0	0	0	0	0	0	0	2244	1247	43	2		2	C3orf32	3	8675651	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	5590258	8675651	189346779	38	157537											
EFHB	151651	broad.mit.edu	37	chr3	19961381	19961381	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaggtgcaatctggggatCatttgctcttccgtaaaata	9	7	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19961381	A	A	19961381	3	1	197	1	0	0	0	0	1	0	0	0	4985	826	29	3	1605	3	EFHB	3	19961381	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	11285730	19961381	178061049	39	157538											
EXOG	9941	broad.mit.edu	37	chr3	38565414	38565414	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattggcgaggacaacgtggCagtcccctcacacctttata	10	12	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38565414	T	T	38565414	3	4	197	1	0	0	0	0	1	0	0	0	5354	710	25	4	690	4	EXOG	3	38565414	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	18604033	38565414	159457016	40	157539											
TRAK1	22906	broad.mit.edu	37	chr3	42244104	42244104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagggcgagctgcgcaGcggctccctcacacccactg	14	15	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42244104	T	T	42244104	3	4	197	1	0	0	0	0	1	0	0	0	16573	971	34	3	1770	3	TRAK1	3	42244104	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	3678690	42244104	155778326	41	157540											
TWF2	11344	broad.mit.edu	37	chr3	52273119	52273119	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggaccaagagaggtggagGatgtggcggaggctgtcgac	19	7	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52273119	A	A	52273119	1	1	197	0	1	0	0	0	0	0	0	0	16908	1189	41	4		4	TWF2	3	52273119	5'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	10029015	52273119	145749311	42	157541											
TKT	7086	broad.mit.edu	37	chr3	53264635	53264635	+	Frame_Shift_Del	DEL	T	-	-													ccgtaggccttgcgggtggcTatctgtgaggaagagagtgg							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53264635	-	-	53264635	7	5	197	1	0	1	0	1	0	0	0	0	16057	1512	53	0	954	0	TKT	3	53264635	Frame_Shift_Del	DEL	T	TCGA-67-3774-01A-01D-1040-01	991516	53264635	144757795	43	157542											
CACNA1D	776	broad.mit.edu	37	chr3	53810712	53810712	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttggggcctcaccattTagatgaattcaaaagaatat	7	6	2	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53810712	C	C	53810712	3	2	197	1	0	0	0	0	1	0	0	0	2567	1764	61	5	4759	5	CACNA1D	3	53810712	Missense_Mutation	SNP	T	TCGA-67-3774-01A-01D-1040-01	546077	53810712	144211718	44	157543											
CACNA2D3	55799	broad.mit.edu	37	chr3	54919343	54919343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatcccgatgtgtccttgGcagatgaatggtaagaatta	10	7	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54919343	T	T	54919343	3	4	197	1	0	0	0	0	1	0	0	0	2576	1203	42	3	2034	3	CACNA2D3	3	54919343	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	1108631	54919343	143103087	45	157544											
ROBO2	6092	broad.mit.edu	37	chr3	77147419	77147419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggagtaaacctgatgaaGgaagctacgtttgtgttgcg	14	6	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77147419	A	A	77147419	3	1	197	1	0	0	0	0	1	0	0	0	13625	1001	35	4	324	4	ROBO2	3	77147419	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	22228076	77147419	120875011	46	157545											
CASR	846	broad.mit.edu	37	chr3	122003109	122003109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacgtgccacgagggctccCtcatggccctgggcttcctg	12	16	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122003109	A	A	122003109	3	1	197	1	0	0	0	0	1	0	0	0	2708	681	24	2	2360	2	CASR	3	122003109	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	44855690	122003109	76019321	47	157546											
ALDH1L1	10840	broad.mit.edu	37	chr3	125877379	125877379	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggacgttgagctcggcCcccaaagcctggtattttgc	13	12	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125877379	A	A	125877379	2	1	197	1	0	0	0	0	0	0	0	1	494	610	22	2		2	ALDH1L1	3	125877379	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	3874270	125877379	72145051	48	157547											
DNAJC13	23317	broad.mit.edu	37	chr3	132179873	132179873	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catctcttaagtctttaagaGaatctgttgcattgtttcag	7	7	4	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132179873	C	C	132179873	1	2	197	0	1	0	0	0	0	0	0	0	4672	957	33	4		4	DNAJC13	3	132179873	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	6302494	132179873	65842557	49	157548											
MME	4311	broad.mit.edu	37	chr3	154858045	154858045	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaagatgacattggcccaGatccaaaataacttttcact	5	10	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154858045	T	T	154858045	3	4	197	1	0	0	0	0	1	0	0	0	9738	933	33	3	955	3	MME	3	154858045	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	22678172	154858045	43164385	50	157549											
NAALADL2	254827	broad.mit.edu	37	chr3	175436231	175436231	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaggggggtgcttctgGgtatttaggtccacattcta	12	6	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175436231	T	T	175436231	1	4	197	0	1	0	0	0	0	0	0	0	10224	1247	43	2		2	NAALADL2	3	175436231	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	20578186	175436231	22586199	51	157550											
KIAA0232	9778	broad.mit.edu	37	chr4	6865249	6865249	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttgacttaagcaatcCattttcacaagttcttcatg	4	10	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6865249	G	G	6865249	3	3	197	1	0	0	0	0	1	0	0	0	8233	594	21	4	3158	4	KIAA0232	4	6865249	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01		6865249	184289027	52	157551											
PDS5A	23244	broad.mit.edu	37	chr4	39868522	39868522	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcaccctcactaaccaaCatcgctgataataaccgaag	6	13	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39868522	T	T	39868522	3	4	197	1	0	0	0	0	1	0	0	0	11785	478	17	4	1456	4	PDS5A	4	39868522	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	33003273	39868522	151285754	53	157552											
RASL11B	65997	broad.mit.edu	37	chr4	53731759	53731759	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcatgctaggctgctcattCtatgaagtgtctgtcagtga	11	8	4	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53731759	A	A	53731759	3	1	197	1	0	0	0	0	1	0	0	0	13190	912	32	3	548	3	RASL11B	4	53731759	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	13863237	53731759	137422517	54	157553											
TECRL	253017	broad.mit.edu	37	chr4	65155522	65155522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactttcagtgtgatacacCtctgcctattttttaaaaaa	4	9	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65155522	A	A	65155522	1	1	197	0	1	0	0	0	0	0	0	0	15868	696	24	2		2	TECRL	4	65155522	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	11423763	65155522	125998754	55	157554											
UGT2B7	7364	broad.mit.edu	37	chr4	69962330	69962330	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtgctggtgtgggcagCagaatacagccattggatga	15	6	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69962330	T	T	69962330	3	4	197	1	0	0	0	0	1	0	0	0	17088	710	25	4	94	4	UGT2B7	4	69962330	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	4806808	69962330	121191946	56	157555											
NPFFR2	10886	broad.mit.edu	37	chr4	72994591	72994591	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccataagtgatttactagttGgcatattctgcatgcctata	7	8	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72994591	A	A	72994591	3	1	197	1	0	0	0	0	1	0	0	0	10673	1348	47	4	601	4	NPFFR2	4	72994591	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	3032261	72994591	118159685	57	157556											
STBD1	8987	broad.mit.edu	37	chr4	77230372	77230372	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgcaagcagcatcatggaGattgcagaatccttccaggg	11	10	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77230372	T	T	77230372	3	4	197	1	0	0	0	0	1	0	0	0	15392	942	33	3	302	3	STBD1	4	77230372	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	4235781	77230372	113923904	58	157557											
PPM1K	152926	broad.mit.edu	37	chr4	89183600	89183600	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcggaacataaatatgatGagcatttatgaaaaaactac	7	6	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89183600	A	A	89183600	1	1	197	0	1	0	0	0	0	0	0	0	12444	1305	45	4		4	PPM1K	4	89183600	3'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	11953228	89183600	101970676	59	157558											
PPM1K	152926	broad.mit.edu	37	chr4	89183867	89183867	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtactgttatcctcagtaccGtactgtattgcctgcaaggt	9	10	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89183867	C	C	89183867	4	2	197	1	0	0	0	0	0	1	0	0	12444	1140	40	4	123	4	PPM1K	4	89183867	Nonsense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	267	89183867	101970409	60	157559											
BMPR1B	658	broad.mit.edu	37	chr4	96069881	96069881	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaatgctgtaatgctttGctttactttttccttagtga	6	8	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96069881	T	T	96069881	1	4	197	0	1	0	0	0	0	0	0	0	1476	1334	46	3		3	BMPR1B	4	96069881	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	6886014	96069881	95084395	61	157560											
ADH1A	124	broad.mit.edu	37	chr4	100205476	100205476	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatctacaaaaataatcttcGattcttgtgagacattcctt	4	8	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100205476	T	T	100205476	1	4	197	0	1	0	0	0	0	0	0	0	307	1073	37	3		3	ADH1A	4	100205476	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	4135595	100205476	90948800	62	157561											
MTTP	4547	broad.mit.edu	37	chr4	100518404	100518404	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttccccaacctttgtgtGgggttgtctgtcagaaacat	10	9	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100518404	T	T	100518404	1	4	197	0	1	0	0	0	0	0	0	0	10058	1363	47	2		2	MTTP	4	100518404	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	312928	100518404	90635872	63	157562											
MTTP	4547	broad.mit.edu	37	chr4	100540140	100540140	+	Frame_Shift_Del	DEL	T	-	-													ttttcttctaggaacttcagTtacaatctggactaaaagcc							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100540140	-	-	100540140	7	5	197	1	0	1	0	1	0	0	0	0	10058	1722	60	0	2289	0	MTTP	4	100540140	Frame_Shift_Del	DEL	T	TCGA-67-3774-01A-01D-1040-01	21736	100540140	90614136	64	157563											
ANK2	287	broad.mit.edu	37	chr4	114238791	114238791	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttttcactctcctgctcGgctcatcattttgtcatccc	4	15	5	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114238791	A	A	114238791	1	1	197	0	1	0	0	0	0	0	0	0	621	1131	39	4		4	ANK2	4	114238791	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	13698651	114238791	76915485	65	157564											
LARP1B	55132	broad.mit.edu	37	chr4	129099558	129099558	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatattttcctagcatctaaAtaattttaagagttttttat	3	4	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129099558	G	G	129099558	1	3	197	0	1	0	0	0	0	0	0	0	8701	116	4	5		5	LARP1B	4	129099558	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	14860767	129099558	62054718	66	157565											
FGG	2266	broad.mit.edu	37	chr4	155530768	155530768	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttattaaatacacatggtGgggaaaaaattaccttctga	7	5	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155530768	A	A	155530768	1	1	197	0	1	0	0	0	0	0	0	0	5927	1363	47	4		4	FGG	4	155530768	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	26431210	155530768	35623508	67	157566											
RAPGEF2	9693	broad.mit.edu	37	chr4	160235971	160235971	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaattaaaaagatttagtgGcaaaattgtctgatgaaata	8	3	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160235971	T	T	160235971	1	4	197	0	1	0	0	0	0	0	0	0	13152	1218	42	3		3	RAPGEF2	4	160235971	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	4705203	160235971	30918305	68	157567											
NEK1	4750	broad.mit.edu	37	chr4	170523812	170523812	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggcatctttacagataTgctagacatttaaaaaacta	5	7	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170523812	C	C	170523812	1	2	197	0	1	0	0	0	0	0	0	0	10416	1479	51	5		5	NEK1	4	170523812	5'UTR	SNP	T	TCGA-67-3774-01A-01D-1040-01	10287841	170523812	20630464	69	157568											
SPEF2	79925	broad.mit.edu	37	chr5	35759585	35759585	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatctaaatgttttcaaaaTagtgctttcagaggcttata	6	6	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35759585	C	C	35759585	1	2	197	0	1	0	0	0	0	0	0	0	15153	1421	49	5		5	SPEF2	5	35759585	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01		35759585	145155675	70	157569											
GFM2	84340	broad.mit.edu	37	chr5	74046544	74046544	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttaacaaaaccatcataTgatccagcaatctcacatct	2	11	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74046544	G	G	74046544	1	3	197	0	1	0	0	0	0	0	0	0	6406	1479	51	5		5	GFM2	5	74046544	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	38286959	74046544	106868716	71	157570											
RASGRF2	5924	broad.mit.edu	37	chr5	80388726	80388726	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacaatgcttcttatttacAaaacactttttaatatgtac	3	7	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80388726	C	C	80388726	2	2	197	1	0	0	0	0	0	0	0	1	13181	117	5	5		5	RASGRF2	5	80388726	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01	6342182	80388726	100526534	72	157571											
GPR98	84059	broad.mit.edu	37	chr5	89931018	89931018	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaatatttctttactgGttactccagccattgcaaat	5	10	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89931018	A	A	89931018	3	1	197	1	0	0	0	0	1	0	0	0	6787	1261	44	4	1965	4	GPR98	5	89931018	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	9542292	89931018	90984242	73	157572											
GRAMD3	65983	broad.mit.edu	37	chr5	125813267	125813267	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttcatggaggctggagaGcttgctgctggttttgattt	13	5	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125813267	A	A	125813267	1	1	197	0	1	0	0	0	0	0	0	0	6817	986	34	4		4	GRAMD3	5	125813267	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	35882249	125813267	55101993	74	157573											
PCDHA13	56136	broad.mit.edu	37	chr5	140261961	140261961	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctccactactccgtcccCgaggaagcaaaacacggcac	8	17	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140261961	T	T	140261961	2	4	197	1	0	0	0	0	0	0	0	1	11617	639	23	4		4	PCDHA13	5	140261961	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	14448694	140261961	40653299	75	157574											
LARS	51520	broad.mit.edu	37	chr5	145544113	145544113	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccaagatattaatgaatGtaatttttttacattctaaa	4	5	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145544113	A	A	145544113	1	1	197	0	1	0	0	0	0	0	0	0	8706	1392	48	4		4	LARS	5	145544113	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	5282152	145544113	35371147	76	157575											
FLT4	2324	broad.mit.edu	37	chr5	180048486	180048487	+	Intron	DNP	GA	TT	TT													gccacgccggggcaaaggcaGaggcagctactgctagaaga							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	180048487	TT	TT	180048486	1	4	197	0	1	0	0	0	0	0	0	0	6002	957	33	3		3	FLT4	5	180048486	Intron	DNP	GA	TCGA-67-3774-01A-01D-1040-01	34504373	180048486	866774	77	157576											
BTNL9	153579	broad.mit.edu	37	chr5	180486301	180486301	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcggaggatggcaagagCgtgtcttcccgcggggcgcc	18	11	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180486301	A	A	180486301	3	1	197	1	0	0	0	0	1	0	0	0	1578	767	27	3	1085	3	BTNL9	5	180486301	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	437815	180486301	428959	78	157577											
NQO2	4835	broad.mit.edu	37	chr6	3010463	3010463	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctatttataaaaaccatcTttatgttttttactttaaaa	1	6	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3010463	G	G	3010463	1	3	197	0	1	0	0	0	0	0	0	0	10707	1624	56	5		5	NQO2	6	3010463	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01		3010463	168104604	79	157578											
F13A1	2162	broad.mit.edu	37	chr6	6146039	6146039	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagagaggagaggttggaaGatccagctttccactttgat	12	6	0	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6146039	T	T	6146039	1	4	197	0	1	0	0	0	0	0	0	0	5383	957	33	3		3	F13A1	6	6146039	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	3135576	6146039	164969028	80	157579											
GPLD1	2822	broad.mit.edu	37	chr6	24446993	24446993	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccttttccctcagcctcaTgctcagtgcgctccatagca	7	17	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24446993	C	C	24446993	1	2	197	0	1	0	0	0	0	0	0	0	6679	1479	51	5		5	GPLD1	6	24446993	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	18300954	24446993	146668074	81	157580											
HIST1H1T	3010	broad.mit.edu	37	chr6	26107644	26107644	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcttaaaataatgtgggTggctcttaaaagagcctttg	9	7	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26107644	A	A	26107644	1	1	197	0	1	0	0	0	0	0	0	0	7194	1711	59	5		5	HIST1H1T	6	26107644	3'UTR	SNP	T	TCGA-67-3774-01A-01D-1040-01	1660651	26107644	145007423	82	157581											
TRIM40	135644	broad.mit.edu	37	chr6	30113711	30113711	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctaccgtgttccattgactCctcccagtgggtgcccccct	8	18	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30113711	A	A	30113711	1	1	197	0	1	0	0	0	0	0	0	0	16639	870	30	3		3	TRIM40	6	30113711	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	4006067	30113711	141001356	83	157582											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34802159	34802159	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgaccttcgccttacccgCatcactgacccctgccgagg	9	17	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34802159	T	T	34802159	2	4	197	1	0	0	0	0	0	0	0	1	17094	697	25	4		4	UHRF1BP1	6	34802159	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	4688448	34802159	136312908	84	157583											
SLC26A8	116369	broad.mit.edu	37	chr6	35922941	35922941	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtacttacctgtcttaatacGactaacccccgtgaatccac	5	14	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35922941	T	T	35922941	2	4	197	1	0	0	0	0	0	0	0	1	14637	1045	37	3		3	SLC26A8	6	35922941	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	1120782	35922941	135192126	85	157584											
GCLC	2729	broad.mit.edu	37	chr6	53373936	53373936	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgctatcttatttcataCgaagtagtatttaaaataag	5	5	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53373936	T	T	53373936	1	4	197	0	1	0	0	0	0	0	0	0	6357	551	19	4		4	GCLC	6	53373936	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	17450995	53373936	117741131	86	157585											
FAM83B	222584	broad.mit.edu	37	chr6	54805391	54805391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatactcattctcggcttcGttcctctttagtatttaaac	4	10	3	0	rs146327371		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54805391	T	T	54805391	3	4	197	1	0	0	0	0	1	0	0	0	5687	1145	40	3	1636	3	FAM83B	6	54805391	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	1431455	54805391	116309676	87	157586											
ME1	4199	broad.mit.edu	37	chr6	84025069	84025069	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaattcgtccaaaaaatcatCatattcagaacctcttactc	3	11	4	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84025069	T	T	84025069	3	4	197	1	0	0	0	0	1	0	0	0	9510	826	29	4	1090	4	ME1	6	84025069	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	29219678	84025069	87089998	88	157587											
TBX18	9096	broad.mit.edu	37	chr6	85473649	85473649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgccactccgagccggcCcagacgtcgccccagccggc	12	21	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85473649	A	A	85473649	3	1	197	1	0	0	0	0	1	0	0	0	15775	623	22	2	1604	2	TBX18	6	85473649	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	1448580	85473649	85641418	89	157588											
FYN	2534	broad.mit.edu	37	chr6	112015966	112015966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagataattcccaacagagaGctgtatttggttttcttatt	7	6	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112015966	T	T	112015966	1	4	197	0	1	0	0	0	0	0	0	0	6186	986	34	3		3	FYN	6	112015966	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	26542317	112015966	59099101	90	157589											
FYN	2534	broad.mit.edu	37	chr6	112020635	112020635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagtgtctttgtcccaacGgctgtgtgtgcatttttgtt	10	7	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112020635	T	T	112020635	1	4	197	0	1	0	0	0	0	0	0	0	6186	1131	39	1		1	FYN	6	112020635	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	4669	112020635	59094432	91	157590											
MOXD1	26002	broad.mit.edu	37	chr6	132641792	132641792	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcatctcagctctatctttCgtgttgtagcgacactcagt	8	11	5	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132641792	T	T	132641792	2	4	197	1	0	0	0	0	0	0	0	1	9814	871	31	4		4	MOXD1	6	132641792	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	20621157	132641792	38473275	92	157591											
UNC93A	54346	broad.mit.edu	37	chr6	167717596	167717596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtacagtggattgcagcaagGattcctctccagcgaataca	10	10	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167717596	T	T	167717596	3	4	197	1	0	0	0	0	1	0	0	0	17122	1174	41	3	833	3	UNC93A	6	167717596	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	35075804	167717596	3397471	93	157592											
PDE1C	5137	broad.mit.edu	37	chr7	31876897	31876897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcagcataagggataagGcttttggcttttcaatgctg	11	6	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31876897	T	T	31876897	3	4	197	1	0	0	0	0	1	0	0	0	11729	1203	42	3	832	3	PDE1C	7	31876897	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01		31876897	127261766	94	157593											
TYW1B	441250	broad.mit.edu	37	chr7	72178676	72178676	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgatctctgggtacattaTtggttctcccacgagggaca	11	9	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72178676	C	C	72178676	3	2	197	1	0	0	0	0	1	0	0	0	16945	1493	52	5	874	5	TYW1B	7	72178676	Missense_Mutation	SNP	T	TCGA-67-3774-01A-01D-1040-01	40301779	72178676	86959987	95	157594											
MUC17	140453	broad.mit.edu	37	chr7	100663518	100663518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtgacccccacgcccCgctgcccaagaggcccccat	11	19	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100663518	A	A	100663518	1	1	197	0	1	0	0	0	0	0	0	0	10068	667	23	1		1	MUC17	7	100663518	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	28484842	100663518	58475145	96	157595											
ST7	7982	broad.mit.edu	37	chr7	116778442	116778442	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggcaaatgggcctctgTattttttttttttttaaatg	8	5	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116778442	C	C	116778442	1	2	197	0	1	0	0	0	0	0	0	0	15347	1653	57	5		5	ST7	7	116778442	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	16114924	116778442	42360221	97	157596											
CSMD1	64478	broad.mit.edu	37	chr8	2975964	2975964	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccagtttctgttgatcccAtgctgacaagtgaggacagg	11	9	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2975964	G	G	2975964	2	3	197	1	0	0	0	0	0	0	0	1	3978	214	8	5		5	CSMD1	8	2975964	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01		2975964	143388058	98	157597											
TNKS	8658	broad.mit.edu	37	chr8	9592822	9592822	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacattttctggtccttattAcatatgtatgtatttttttt	4	5	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9592822	T	T	9592822	1	4	197	0	1	0	0	0	0	0	0	0	16442	406	14	5		5	TNKS	8	9592822	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	6616858	9592822	136771200	99	157598											
EFHA2	286097	broad.mit.edu	37	chr8	16942725	16942725	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttccattttgtgaataccTtctctgttttttctggcaga	6	8	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16942725	A	A	16942725	1	1	197	0	1	0	0	0	0	0	0	0	4984	1624	56	5		5	EFHA2	8	16942725	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	7349903	16942725	129421297	100	157599											
PDGFRL	5157	broad.mit.edu	37	chr8	17500058	17500058	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacgctcaacagtgttgggtGagtgggagctctttatagca	13	7	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17500058	A	A	17500058	1	1	197	0	1	0	0	0	0	0	0	0	11757	1305	45	4		4	PDGFRL	8	17500058	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	557333	17500058	128863964	101	157600											
ENTPD4	9583	broad.mit.edu	37	chr8	23305214	23305214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggttttatcttcatgaccaCtggctttcggtttttatccc	7	11	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23305214	A	A	23305214	3	1	197	1	0	0	0	0	1	0	0	0	5183	565	20	3	1499	3	ENTPD4	8	23305214	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	5805156	23305214	123058808	102	157601											
ANK1	286	broad.mit.edu	37	chr8	41554286	41554286	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtcctcatcatactctttAgatgcctgaggagagagaaa	10	8	3	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41554286	T	T	41554286	2	4	197	1	0	0	0	0	0	0	0	1	620	407	15	5		5	ANK1	8	41554286	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01	18249072	41554286	104809736	103	157602											
TGS1	96764	broad.mit.edu	37	chr8	56702682	56702682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttcattggctttgcaaaTagcagaaaagttgtcaaacc	7	7	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56702682	C	C	56702682	1	2	197	0	1	0	0	0	0	0	0	0	15960	1421	49	5		5	TGS1	8	56702682	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	15148396	56702682	89661340	104	157603											
C8orf45	157777	broad.mit.edu	37	chr8	67809252	67809252	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgtttctcaaattataTagaagtccttttgagtgctg	7	6	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67809252	C	C	67809252	1	2	197	0	1	0	0	0	0	0	0	0	2456	1421	49	5		5	C8orf45	8	67809252	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	11106570	67809252	78554770	105	157604											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885786	88885786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcagaaggtgggaatcCaagtgattcagtgaggccca	13	9	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88885786	A	A	88885786	3	1	197	1	0	0	0	0	1	0	0	0	4305	593	21	2	777	2	DCAF4L2	8	88885786	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	21076534	88885786	57478236	106	157605											
TM7SF4	81501	broad.mit.edu	37	chr8	105360676	105360676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtaaagaattatggccaCgttttttgtagtcagtctac	9	6	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105360676	A	A	105360676	1	1	197	0	1	0	0	0	0	0	0	0	16099	551	19	3		3	TM7SF4	8	105360676	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	16474890	105360676	41003346	107	157606											
CSMD3	114788	broad.mit.edu	37	chr8	114388965	114388965	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctaagagccaggatatctAcctgaggctgtctgtcggtc	12	11	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114388965	T	T	114388965	1	4	197	0	1	0	0	0	0	0	0	0	3980	405	14	5		5	CSMD3	8	114388965	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	9028289	114388965	31975057	108	157607											
ADCY8	114	broad.mit.edu	37	chr8	131792844	131792844	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcccaggcagtcttcttGggggcaagatgaatgggttg	15	8	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131792844	A	A	131792844	3	1	197	1	0	0	0	0	1	0	0	0	300	1348	47	4	211	4	ADCY8	8	131792844	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	17403879	131792844	14571178	109	157608											
TMEM71	137835	broad.mit.edu	37	chr8	133734456	133734456	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttcccttgtacccaccAaaaaaaaaaaaaagttttgg	4	9	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133734456	C	C	133734456	1	2	197	0	1	0	0	0	0	0	0	0	16323	145	5	5		5	TMEM71	8	133734456	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	1941612	133734456	12629566	110	157609											
GALT	2592	broad.mit.edu	37	chr9	34648858	34648858	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccccgtcggcatgtgcggCggctacctgagctgacccct	13	16	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34648858	T	T	34648858	3	4	197	1	0	0	0	0	1	0	0	0	6292	759	27	4	817	4	GALT	9	34648858	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01		34648858	106564573	111	157610											
VPS13A	23230	broad.mit.edu	37	chr9	79840736	79840736	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgttctgttgtttgcttcCtattatatcttttctttagt	5	6	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79840736	T	T	79840736	1	4	197	0	1	0	0	0	0	0	0	0	17316	696	24	4		4	VPS13A	9	79840736	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	45191878	79840736	61372695	112	157611											
SCAI	286205	broad.mit.edu	37	chr9	127818229	127818229	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgttttcctctctccctgTgggatatcatcttcagcacc	6	14	4	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127818229	A	A	127818229	2	1	197	1	0	0	0	0	0	0	0	1	13981	1683	59	5		5	SCAI	9	127818229	Silent	SNP	T	TCGA-67-3774-01A-01D-1040-01	47977493	127818229	13395202	113	157612											
NUP214	8021	broad.mit.edu	37	chr9	134070532	134070532	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaattcctgagggcggtttGtatgaatgaatgataaaatg	11	3	0	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134070532	C	C	134070532	1	2	197	0	1	0	0	0	0	0	0	0	10857	1392	48	4		4	NUP214	9	134070532	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	6252303	134070532	7142899	114	157613											
OLFM1	10439	broad.mit.edu	37	chr9	137982234	137982235	+	Intron	INS	-	TT	TT													tttgtatgtgtgtgtgtttgINStgtgtgtgtgtgtgtgtgta					rs149127682	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	137982235	TT	TT	137982234	6	5	197	0	1	1	1	0	0	0	0	0	10947	1392	48	0		0	OLFM1	9	137982234	Intron	INS	-	TCGA-67-3774-01A-01D-1040-01	3911702	137982234	3231197	115	157614											
GLT6D1	360203	broad.mit.edu	37	chr9	138530933	138530933	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacctctgccaatcactaaaGatcatgatttatcaatactt	3	11	4	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138530933	T	T	138530933	1	4	197	0	1	0	0	0	0	0	0	0	6532	957	33	3		3	GLT6D1	9	138530933	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	548699	138530933	2682498	116	157615											
NOTCH1	4851	broad.mit.edu	37	chr9	139407481	139407481	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacccctcacctgtgtagGgcagcaggcagttgcacttg	11	15	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139407481	A	A	139407481	3	1	197	1	0	0	0	0	1	0	0	0	10642	1232	43	4	5288	4	NOTCH1	9	139407481	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	876548	139407481	1805950	117	157616											
GAD2	2572	broad.mit.edu	37	chr10	26570005	26570005	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgctctgctctcctgGttagagaagaggtatgtctc	12	9	3	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26570005	C	C	26570005	3	2	197	1	0	0	0	0	1	0	0	0	6240	1261	44	4	1271	4	GAD2	10	26570005	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01		26570005	108964742	118	157617											
UNC5B	219699	broad.mit.edu	37	chr10	73055740	73055740	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggctgggctgatggatgGggaggggcaccacttaaggg	21	6	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73055740	C	C	73055740	1	2	197	0	1	0	0	0	0	0	0	0	17118	1247	43	4		4	UNC5B	10	73055740	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	46485735	73055740	62479007	119	157618											
MYOZ1	58529	broad.mit.edu	37	chr10	75394577	75394577	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttagcaaaggcagaaaTagtggctaaccagaagaccc	10	8	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75394577	C	C	75394577	1	2	197	0	1	0	0	0	0	0	0	0	10189	1421	49	5		5	MYOZ1	10	75394577	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	2338837	75394577	60140170	120	157619											
PDE6C	5146	broad.mit.edu	37	chr10	95395512	95395512	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtttactcctgggctgagaGagagagacagggaaggaggg	19	5	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95395512	A	A	95395512	1	1	197	0	1	0	0	0	0	0	0	0	11741	957	33	4		4	PDE6C	10	95395512	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	20000935	95395512	40139235	121	157620											
ZFYVE27	118813	broad.mit.edu	37	chr10	99502838	99502838	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctctgtagtgatcaggactCtctgtattgtaggtggcaga	12	7	3	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99502838	T	T	99502838	1	4	197	0	1	0	0	0	0	0	0	0	17795	928	32	4		4	ZFYVE27	10	99502838	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	4107326	99502838	36031909	122	157621											
COL17A1	1308	broad.mit.edu	37	chr10	105833976	105833976	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtactccggagaagagttGccactggagctccctggaga	15	10	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105833976	A	A	105833976	2	1	197	1	0	0	0	0	0	0	0	1	3706	1306	46	4		4	COL17A1	10	105833976	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	6331138	105833976	29700771	123	157622											
ECHS1	1892	broad.mit.edu	37	chr10	135183319	135183319	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctgggaactaaaggcCtcttcaaaataaaaatctgt	8	9	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135183319	T	T	135183319	1	4	197	0	1	0	0	0	0	0	0	0	4936	696	24	4		4	ECHS1	10	135183319	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	29349343	135183319	351428	124	157623											
PHRF1	57661	broad.mit.edu	37	chr11	601720	601720	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagcattgggtggcagGgcctgagtctcctgctggcc	17	10	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	601720	T	T	601720	1	4	197	0	1	0	0	0	0	0	0	0	11956	1247	43	2		2	PHRF1	11	601720	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01		601720	134404796	125	157624											
CHST1	8534	broad.mit.edu	37	chr11	45671907	45671907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcggccgccacggtcagGttgagtagcccgcacttgcg	14	15	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45671907	T	T	45671907	3	4	197	1	0	0	0	0	1	0	0	0	3428	1252	44	3	672	3	CHST1	11	45671907	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	45070187	45671907	89334609	126	157625											
FOLH1	2346	broad.mit.edu	37	chr11	49196587	49196587	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggttaacagattaacactAtaaggtttaagggaattttc	8	5	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49196587	G	G	49196587	1	3	197	0	1	0	0	0	0	0	0	0	6037	464	16	5		5	FOLH1	11	49196587	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	3524680	49196587	85809929	127	157626											
OR5D14	219436	broad.mit.edu	37	chr11	55563901	55563901	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccccatgctgaaccctctGatctacagcctaaggaataa	6	13	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563901	T	T	55563901	2	4	197	1	0	0	0	0	0	0	0	1	11249	1277	45	3		3	OR5D14	11	55563901	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	6367314	55563901	79442615	128	157627											
FADS3	3995	broad.mit.edu	37	chr11	61646383	61646383	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgccagggcctggggcccCagtgaatcctttcagcttgc	12	16	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61646383	G	G	61646383	1	3	197	0	1	0	0	0	0	0	0	0	5413	609	21	4		4	FADS3	11	61646383	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	6082482	61646383	73360133	129	157628											
AHNAK	79026	broad.mit.edu	37	chr11	62293403	62293403	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatctttggagtcttaaaaTgcatctctggcatcttaaac	6	8	4	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62293403	A	A	62293403	3	1	197	1	0	0	0	0	1	0	0	0	414	1464	51	5	9306	5	AHNAK	11	62293403	Missense_Mutation	SNP	T	TCGA-67-3774-01A-01D-1040-01	647020	62293403	72713113	130	157629											
C11orf2	738	broad.mit.edu	37	chr11	64878677	64878677	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccttcttatctggccccgGagactttctgcctcatccca	6	17	4	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64878677	A	A	64878677	1	1	197	0	1	0	0	0	0	0	0	0	1644	1189	41	4		4	C11orf2	11	64878677	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	2585274	64878677	70127839	131	157630			1	118		4	4	3857	N	G_CC_C	6.245762e-06
C11orf2	738	broad.mit.edu	37	chr11	64879032	64879032	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccatggagcccagtgtGgttgaggtcatctgcgagcg	16	10	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64879032	A	A	64879032	2	1	197	1	0	0	0	0	0	0	0	1	1644	1335	47	4		4	C11orf2	11	64879032	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	355	64879032	70127484	132	157631			1	118		4	4	3857	N	G_CC_C	6.245762e-06
TM7SF2	7108	broad.mit.edu	37	chr11	64882511	64882512	+	Missense_Mutation	DNP	CC	AA	AA													tcctgctgcaccacccgcagCccctggggttgcccatggcc							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	64882512	AA	AA	64882511	3	1	197	1	0	0	0	0	1	0	0	0	16097	739	26	3	876	3	TM7SF2	11	64882511	Missense_Mutation	DNP	CC	TCGA-67-3774-01A-01D-1040-01	3479	64882511	70124005	133	157632			1	118		4	4	3857	N	G_CC_C	6.245762e-06
TM7SF2	7108	broad.mit.edu	37	chr11	64882533	64882533	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctggggttgcccatggcctCtgtcatctgcctcatcaatg	10	14	5	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64882533	T	T	64882533	3	4	197	1	0	0	0	0	1	0	0	0	16097	913	32	4	898	4	TM7SF2	11	64882533	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	22	64882533	70123983	134	157633			1	118		4	4	3857	N	G_CC_C	6.245762e-06
MAP3K11	4296	broad.mit.edu	37	chr11	65375459	65375459	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgagcttgttaacagCtacgccataggccacagcaa	10	11	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65375459	T	T	65375459	3	4	197	1	0	0	0	0	1	0	0	0	9337	797	28	4	1572	4	MAP3K11	11	65375459	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	492926	65375459	69631057	135	157634											
SLCO2B1	11309	broad.mit.edu	37	chr11	74911163	74911163	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagccagctctaccccaacTggctgtggaacttgggcctc	10	16	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74911163	A	A	74911163	1	1	197	0	1	0	0	0	0	0	0	0	14841	1595	55	5		5	SLCO2B1	11	74911163	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	9535704	74911163	60095353	136	157635											
LRRC32	2615	broad.mit.edu	37	chr11	76371718	76371718	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcggccgctggcattccCgctgggggctgagaggggca	21	11	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76371718	T	T	76371718	3	4	197	1	0	0	0	0	1	0	0	0	9074	652	23	4	1073	4	LRRC32	11	76371718	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	1460555	76371718	58634798	137	157636											
CAPN5	726	broad.mit.edu	37	chr11	76825355	76825355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactggtggacttcacgggtGgtgtttctgagcccatcgac	13	11	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76825355	A	A	76825355	3	1	197	1	0	0	0	0	1	0	0	0	2655	1348	47	4	588	4	CAPN5	11	76825355	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	453637	76825355	58181161	138	157637			2	119	11942822	8	8	6636	G		4.193107e-13
CAPN5	726	broad.mit.edu	37	chr11	76826513	76826513	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccacgcatacgccgtcactGatgtgcgcaaggtgcgcctg	13	14	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76826513	A	A	76826513	3	1	197	1	0	0	0	0	1	0	0	0	2655	1290	45	4	790	4	CAPN5	11	76826513	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	1158	76826513	58180003	139	157638			2	119	11942822	8	8	6636	G		4.193107e-13
CAPN5	726	broad.mit.edu	37	chr11	76826613	76826613	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctggggcgagcgggagtGgaacgggccctggagtgaca	19	11	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76826613	A	A	76826613	4	1	197	1	0	0	0	0	0	1	0	0	2655	1357	47	4	890	4	CAPN5	11	76826613	Nonsense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	100	76826613	58179903	140	157639			2	119	11942822	8	8	6636	G		4.193107e-13
CAPN5	726	broad.mit.edu	37	chr11	76826625	76826625	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggagtggaacgggccctGgagtgacacgtgaggcctgg	20	9	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76826625	A	A	76826625	4	1	197	1	0	0	0	0	0	1	0	0	2655	1357	47	4	902	4	CAPN5	11	76826625	Nonsense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	12	76826625	58179891	141	157640			2	119	11942822	8	8	6636	G		4.193107e-13
CAPN5	726	broad.mit.edu	37	chr11	76826749	76826749	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaggatctgggggaggatGacactaggaacgaagaaggg	18	4	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76826749	A	A	76826749	1	1	197	0	1	0	0	0	0	0	0	0	2655	1305	45	4		4	CAPN5	11	76826749	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	124	76826749	58179767	142	157641			2	119	11942822	8	8	6636	G		4.193107e-13
CAPN5	726	broad.mit.edu	37	chr11	76829344	76829344	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcatgaggacccgcgacaGaaccgcggtggcggctgcat	15	13	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76829344	C	C	76829344	3	2	197	1	0	0	0	0	1	0	0	0	2655	933	33	4	1139	4	CAPN5	11	76829344	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	2595	76829344	58177172	143	157642			2	119	11942822	8	8	6636	G		4.193107e-13
CAPN5	726	broad.mit.edu	37	chr11	76830106	76830106	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtcaagaagccagaagatGaagtcctgatctgcatccag	10	9	2	5			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76830106	A	A	76830106	3	1	197	1	0	0	0	0	1	0	0	0	2655	1291	45	4	1228	4	CAPN5	11	76830106	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	762	76830106	58176410	144	157643			2	119	11942822	8	8	6636	G		4.193107e-13
CAPN5	726	broad.mit.edu	37	chr11	76831990	76831990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgaggccagtgtgggtgGgagtgacattcacactgggc	17	8	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76831990	A	A	76831990	1	1	197	0	1	0	0	0	0	0	0	0	2655	1247	43	4		4	CAPN5	11	76831990	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	1884	76831990	58174526	145	157644			2	119	11942822	8	8	6636	G		4.193107e-13
CCDC90B	60492	broad.mit.edu	37	chr11	82976848	82976848	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgcctgctcagttaccttGataggtagaactaacaggaa	10	8	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82976848	A	A	82976848	1	1	197	0	1	0	0	0	0	0	0	0	2897	1305	45	4		4	CCDC90B	11	82976848	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	6144858	82976848	52029668	146	157645											
SLC36A4	120103	broad.mit.edu	37	chr11	92918921	92918921	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaagctcttgctcatgttCttcatctgatgtcccatcaa	6	12	6	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92918921	A	A	92918921	4	1	197	1	0	0	0	0	0	1	0	0	14710	922	32	3	1439	3	SLC36A4	11	92918921	Nonsense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	9942073	92918921	42087595	147	157646											
PCSK7	9159	broad.mit.edu	37	chr11	117095404	117095404	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtttctcagagtctttgtGcaggccagttacctttccaa	8	12	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117095404	A	A	117095404	1	1	197	0	1	0	0	0	0	0	0	0	11699	1334	46	4		4	PCSK7	11	117095404	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	24176483	117095404	17911112	148	157647			3	120	40263414	6	6	2727	G		6.299464e-11
PCSK7	9159	broad.mit.edu	37	chr11	117096530	117096530	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcaatggacttattagctGaacccaatgaggagacccct	10	10	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117096530	A	A	117096530	1	1	197	0	1	0	0	0	0	0	0	0	11699	1305	45	4		4	PCSK7	11	117096530	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	1126	117096530	17909986	149	157648			3	120	40263414	6	6	2727	G		6.299464e-11
PCSK7	9159	broad.mit.edu	37	chr11	117097786	117097786	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagctgggctatgggataaaGatgtttcagagtagggaggg	17	4	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117097786	C	C	117097786	1	2	197	0	1	0	0	0	0	0	0	0	11699	957	33	4		4	PCSK7	11	117097786	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	1256	117097786	17908730	150	157649			3	120	40263414	6	6	2727	G		6.299464e-11
PCSK7	9159	broad.mit.edu	37	chr11	117097809	117097809	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcagagtagggaggggtGcaggaaatgaagactgtggt	18	3	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117097809	A	A	117097809	1	1	197	0	1	0	0	0	0	0	0	0	11699	1334	46	4		4	PCSK7	11	117097809	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	23	117097809	17908707	151	157650			3	120	40263414	6	6	2727	G		6.299464e-11
PCSK7	9159	broad.mit.edu	37	chr11	117098010	117098010	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatggggtcagggtcattaGagttgaggtcatagctaccc	14	8	3	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117098010	C	C	117098010	3	2	197	1	0	0	0	0	1	0	0	0	11699	942	33	4	1777	4	PCSK7	11	117098010	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	201	117098010	17908506	152	157651			3	120	40263414	6	6	2727	G		6.299464e-11
PCSK7	9159	broad.mit.edu	37	chr11	117098130	117098130	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaaggaaatgggagtttggGaatcgaagctagggcgataa	16	3	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117098130	A	A	117098130	1	1	197	0	1	0	0	0	0	0	0	0	11699	1189	41	4		4	PCSK7	11	117098130	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	120	117098130	17908386	153	157652			3	120	40263414	6	6	2727	G		6.299464e-11
TECTA	7007	broad.mit.edu	37	chr11	121039100	121039100	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tagaactctctgtgacgatgGaaatattccatctgtactgt	8	8	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121039100	C	C	121039100	1	2	197	0	1	0	0	0	0	0	0	0	15869	1189	41	4		4	TECTA	11	121039100	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	3940970	121039100	13967416	154	157653											
ASAM	79827	broad.mit.edu	37	chr11	123006938	123006938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccacccattacaatctGggtagctactgcgtattttt	6	11	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123006938	T	T	123006938	1	4	197	0	1	0	0	0	0	0	0	0	1013	1363	47	2		2	ASAM	11	123006938	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	1967838	123006938	11999578	155	157654											
ESAM	90952	broad.mit.edu	37	chr11	124632059	124632059	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggaaatcatggccctccCtggccgggacggagtcaggg	17	11	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124632059	T	T	124632059	1	4	197	0	1	0	0	0	0	0	0	0	5289	696	24	4		4	ESAM	11	124632059	5'UTR	SNP	C	TCGA-67-3774-01A-01D-1040-01	1625121	124632059	10374457	156	157655											
CHEK1	1111	broad.mit.edu	37	chr11	125503046	125503046	+	Intron	DEL	C	-	-													attcagtgtcatctttttttCttttggtttagataacctca							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125503046	-	-	125503046	6	5	197	0	1	1	0	1	0	0	0	0	3365	928	32	0		0	CHEK1	11	125503046	Intron	DEL	C	TCGA-67-3774-01A-01D-1040-01	870987	125503046	9503470	157	157656											
IGSF9B	22997	broad.mit.edu	37	chr11	133789732	133789732	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaaacacgtccaagctGtccccaggcccagcaggggc	11	16	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133789732	A	A	133789732	2	1	197	1	0	0	0	0	0	0	0	1	7676	1368	48	4		4	IGSF9B	11	133789732	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	8286686	133789732	1216784	158	157657											
PZP	5858	broad.mit.edu	37	chr12	9303303	9303303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctactgggatgtcttGcagaaccatgaaggaaaaac	10	9	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9303303	T	T	9303303	3	4	197	1	0	0	0	0	1	0	0	0	12977	1328	46	3	139	3	PZP	12	9303303	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01		9303303	124548592	159	157658											
PLCZ1	89869	broad.mit.edu	37	chr12	18846722	18846722	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaccaaatagaaactttgGatccagcgcttatcagacca	6	11	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18846722	T	T	18846722	1	4	197	0	1	0	0	0	0	0	0	0	12139	1189	41	3		3	PLCZ1	12	18846722	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	9543419	18846722	115005173	160	157659											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398285	+	Missense_Mutation	DNP	CC	AA	AA													aggcactcttgcctacgccaCcagctccaactaccacaagt					rs121913529		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	25398285	AA	AA	25398284	3	1	197	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	DNP	CC	TCGA-67-3774-01A-01D-1040-01	6551562	25398284	108453611	161	157660											
CCDC91	55297	broad.mit.edu	37	chr12	28605336	28605336	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagttttttatcttttaGgttaaccaagtctgttactc	5	7	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28605336	C	C	28605336	1	2	197	0	1	0	0	0	0	0	0	0	2898	1015	35	4		4	CCDC91	12	28605336	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	3207052	28605336	105246559	162	157661											
KCNH3	23416	broad.mit.edu	37	chr12	49935579	49935579	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggtgctgtggtcggggtaTtgggtgccgcaggcccgggc	20	9	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49935579	A	A	49935579	1	1	197	0	1	0	0	0	0	0	0	0	8103	1508	52	5		5	KCNH3	12	49935579	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	21330243	49935579	83916316	163	157662											
AMHR2	269	broad.mit.edu	37	chr12	53819725	53819726	+	Intron	DEL	TG	-	-													tgagcaccaaggagtgtataTgtgtgtgtgtgtgcctgtgt							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53819726	-	-	53819725	6	5	197	0	1	1	0	1	0	0	0	0	573	1479	51	0		0	AMHR2	12	53819725	Intron	DEL	TG	TCGA-67-3774-01A-01D-1040-01	3884146	53819725	80032170	164	157663											
AGAP2	116986	broad.mit.edu	37	chr12	58129302	58129303	+	Intron	INS	-	C	C													ctccctctgcagctttccaaINScccccccccaaccctgcctg					rs149789274	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58129303	C	C	58129302	6	5	197	0	1	1	1	0	0	0	0	0	368	58	2	0		0	AGAP2	12	58129302	Intron	INS	-	TCGA-67-3774-01A-01D-1040-01	4309577	58129302	75722593	165	157664											
FAM19A2	338811	broad.mit.edu	37	chr12	62274477	62274477	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagccataccagctccaCcagggctatggttgtgaaga	10	12	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62274477	A	A	62274477	1	1	197	0	1	0	0	0	0	0	0	0	5579	522	18	3		3	FAM19A2	12	62274477	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	4145175	62274477	71577418	166	157665											
CCT2	10576	broad.mit.edu	37	chr12	69993839	69993839	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaaacaaaatagggagCtgtatttattttataattag	7	4	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69993839	T	T	69993839	1	4	197	0	1	0	0	0	0	0	0	0	2983	812	28	4		4	CCT2	12	69993839	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	7719362	69993839	63858056	167	157666											
IFT81	28981	broad.mit.edu	37	chr12	110570411	110570411	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatatgagcagctcaagatAtctggattttctacagcaga	9	7	3	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110570411	G	G	110570411	3	3	197	1	0	0	0	0	1	0	0	0	7635	439	16	5	503	5	IFT81	12	110570411	Missense_Mutation	SNP	A	TCGA-67-3774-01A-01D-1040-01	40576572	110570411	23281484	168	157667											
MED13L	23389	broad.mit.edu	37	chr12	116421330	116421330	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctatcaagctgcagaGtggctaaataaggtgctgaa	13	7	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116421330	C	C	116421330	3	2	197	1	0	0	0	0	1	0	0	0	9524	1029	36	4	2129	4	MED13L	12	116421330	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	5850919	116421330	17430565	169	157668											
POLE	5426	broad.mit.edu	37	chr12	133248989	133248989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgacgctgtggctgcaCgtggcaggttgtgcccgaga	17	9	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133248989	A	A	133248989	1	1	197	0	1	0	0	0	0	0	0	0	12291	551	19	3		3	POLE	12	133248989	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	16827659	133248989	602906	170	157669											
POLE	5426	broad.mit.edu	37	chr12	133249496	133249496	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaggcaaagtccaggaAcctaagctgaacttcagtgt	10	10	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133249496	C	C	133249496	1	2	197	0	1	0	0	0	0	0	0	0	12291	58	2	5		5	POLE	12	133249496	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	507	133249496	602399	171	157670											
DCLK1	9201	broad.mit.edu	37	chr13	36521658	36521658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattacaacaatgcaacccCacgagcagacatctgcataa	5	13	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36521658	A	A	36521658	1	1	197	0	1	0	0	0	0	0	0	0	4324	609	21	2		2	DCLK1	13	36521658	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01		36521658	78648220	172	157671											
POSTN	10631	broad.mit.edu	37	chr13	38166184	38166184	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttctccacaagccacctcAaccctttctttgcatataat	3	15	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38166184	G	G	38166184	1	3	197	0	1	0	0	0	0	0	0	0	12354	145	5	5		5	POSTN	13	38166184	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	1644526	38166184	77003694	173	157672											
PCDH8	5100	broad.mit.edu	37	chr13	53418997	53418997	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatggatgtgcgttgggccCgctgcaggatgggctccagc	17	11	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53418997	A	A	53418997	3	1	197	1	0	0	0	0	1	0	0	0	11611	652	23	1	305	1	PCDH8	13	53418997	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	15252813	53418997	61750881	174	157673											
NALCN	259232	broad.mit.edu	37	chr13	101712232	101712232	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcactgggctgggtggtctCgatgctgggcgggttcagaa	17	9	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101712232	T	T	101712232	3	4	197	1	0	0	0	0	1	0	0	0	10242	893	31	4	385	4	NALCN	13	101712232	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	48293235	101712232	13457646	175	157674											
TNFSF13B	10673	broad.mit.edu	37	chr13	108922448	108922448	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtggtgtctttctaccagGtggccgccctgcaaggggac	15	12	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108922448	C	C	108922448	3	2	197	1	0	0	0	0	1	0	0	0	16429	1261	44	4	207	4	TNFSF13B	13	108922448	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	7210216	108922448	6247430	176	157675											
COL4A1	1282	broad.mit.edu	37	chr13	110827061	110827061	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctttttctcccttctctccAgggcttcctgggaaacccgc	7	17	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110827061	T	T	110827061	2	4	197	1	0	0	0	0	0	0	0	1	3721	175	7	5		5	COL4A1	13	110827061	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01	1904613	110827061	4342817	177	157676											
COL4A1	1282	broad.mit.edu	37	chr13	110831887	110831887	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcatttagtaagaatattatCtgctcaacccttttcaagcg	6	9	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110831887	G	G	110831887	1	3	197	0	1	0	0	0	0	0	0	0	3721	928	32	4		4	COL4A1	13	110831887	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	4826	110831887	4337991	178	157677											
OR4K1	79544	broad.mit.edu	37	chr14	20404500	20404500	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accatcattttgatcggtgtCcgatgcaggtcctccagtgg	11	11	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20404500	A	A	20404500	2	1	197	1	0	0	0	0	0	0	0	1	11161	842	30	3		3	OR4K1	14	20404500	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01		20404500	86945040	179	157678											
ACIN1	22985	broad.mit.edu	37	chr14	23547389	23547389	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaattctttctgattctggCagatgagaggtctgagtctc	11	7	5	5			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23547389	G	G	23547389	2	3	197	1	0	0	0	0	0	0	0	1	142	697	25	4		4	ACIN1	14	23547389	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	3142889	23547389	83802151	180	157679											
RPS29	6235	broad.mit.edu	37	chr14	50044477	50044477	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacttggtgctctttttgatGatcttgggcttcgcgagcgg	13	8	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50044477	A	A	50044477	1	1	197	0	1	0	0	0	0	0	0	0	13753	1305	45	4		4	RPS29	14	50044477	3'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	26497088	50044477	57305063	181	157680											
LTBP2	4053	broad.mit.edu	37	chr14	75070327	75070327	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggagtgtctgctactggtgGaggcactcacgtttgataca	13	9	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75070327	T	T	75070327	1	4	197	0	1	0	0	0	0	0	0	0	9161	1189	41	3		3	LTBP2	14	75070327	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	25025850	75070327	32279213	182	157681											
LGMN	5641	broad.mit.edu	37	chr14	93170567	93170567	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggctccccaggagggccCgagcagcggagacttctcac	16	14	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93170567	A	A	93170567	1	1	197	0	1	0	0	0	0	0	0	0	8827	667	23	1		1	LGMN	14	93170567	3'UTR	SNP	C	TCGA-67-3774-01A-01D-1040-01	18100240	93170567	14178973	183	157682											
C15orf41	84529	broad.mit.edu	37	chr15	36905791	36905791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagttgagggagaaaggcGggcccgggaacaggctgagg	20	6	0	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36905791	T	T	36905791	1	4	197	0	1	0	0	0	0	0	0	0	1808	1131	39	1		1	C15orf41	15	36905791	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01		36905791	65625601	184	157683											
MAPKBP1	23005	broad.mit.edu	37	chr15	42116319	42116319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactctcccctctctgttgGccgctgtctggctccatccc	7	18	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42116319	T	T	42116319	1	4	197	0	1	0	0	0	0	0	0	0	9384	1218	42	3		3	MAPKBP1	15	42116319	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	5210528	42116319	60415073	185	157684											
SPG11	80208	broad.mit.edu	37	chr15	44891010	44891010	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggagagccctataacataGgcttcattgcctacttgctg	10	10	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44891010	C	C	44891010	2	2	197	1	0	0	0	0	0	0	0	1	15159	987	35	4		4	SPG11	15	44891010	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	2774691	44891010	57640382	186	157685											
PIF1	80119	broad.mit.edu	37	chr15	65110594	65110594	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccccctacccatgcctggtCttagcttcgccatggctgtt	8	17	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65110594	A	A	65110594	1	1	197	0	1	0	0	0	0	0	0	0	11978	928	32	3		3	PIF1	15	65110594	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	20219584	65110594	37420798	187	157686											
PIF1	80119	broad.mit.edu	37	chr15	65110626	65110626	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggctgttctcagaggctgAgggcagggagctgtcatggg	18	7	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65110626	G	G	65110626	1	3	197	0	1	0	0	0	0	0	0	0	11978	319	11	5		5	PIF1	15	65110626	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	32	65110626	37420766	188	157687											
AXIN1	8312	broad.mit.edu	37	chr16	347719	347719	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcactgacaggcgcacgctCacctgtgggcgaggccatca	12	15	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	347719	A	A	347719	1	1	197	0	1	0	0	0	0	0	0	0	1241	841	29	3		3	AXIN1	16	347719	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01		347719	90007034	189	157688											
MT1F	4494	broad.mit.edu	37	chr16	56692544	56692544	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcactgctgtacctcctgcAggtcactcgccgctcactgg	9	17	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56692544	G	G	56692544	1	3	197	0	1	0	0	0	0	0	0	0	9994	203	7	5		5	MT1F	16	56692544	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	56344825	56692544	33662209	190	157689											
TRPV3	162514	broad.mit.edu	37	chr17	3448012	3448012	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaaagttttaaaatgggcCgggtgaggtggctcatgcat	13	5	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3448012	T	T	3448012	1	4	197	0	1	0	0	0	0	0	0	0	16722	667	23	4		4	TRPV3	17	3448012	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01		3448012	77747198	191	157690											
SHPK	23729	broad.mit.edu	37	chr17	3514315	3514315	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcatgcgtccccctcagtGcaggctgacatggcagagaa	12	13	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3514315	A	A	3514315	1	1	197	0	1	0	0	0	0	0	0	0	14403	1334	46	4		4	SHPK	17	3514315	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	66303	3514315	77680895	192	157691											
ITGAE	3682	broad.mit.edu	37	chr17	3651080	3651080	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctaaggagctaagctctaatCgagggatttcaagcaccagg	11	9	2	0	rs118115429	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3651080	T	T	3651080	1	4	197	0	1	0	0	0	0	0	0	0	7955	899	31	4		4	ITGAE	17	3651080	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	136765	3651080	77544130	193	157692											
MYH4	4622	broad.mit.edu	37	chr17	10363424	10363424	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgcattgtacaccttcaAcagaagtgatagtttagttt	7	8	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10363424	G	G	10363424	1	3	197	0	1	0	0	0	0	0	0	0	10131	58	2	5		5	MYH4	17	10363424	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	6712344	10363424	70831786	194	157693											
FAM83G	644815	broad.mit.edu	37	chr17	18906919	18906919	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatgtagacgctagcccGggtcacgccgcggtaggcga	15	13	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18906919	A	A	18906919	3	1	197	1	0	0	0	0	1	0	0	0	5692	1115	39	4	2055	4	FAM83G	17	18906919	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	8543495	18906919	62288291	195	157694											
SLC5A10	125206	broad.mit.edu	37	chr17	18916555	18916555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggattttcagaggccatgCcctccctgtggctcagattg	11	11	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18916555	A	A	18916555	1	1	197	0	1	0	0	0	0	0	0	0	14776	754	26	3		3	SLC5A10	17	18916555	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	9636	18916555	62278655	196	157695											
SLC5A10	125206	broad.mit.edu	37	chr17	18923431	18923431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcacccccaccctgccatcCcccacccccaaccctatcct	2	26	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18923431	A	A	18923431	1	1	197	0	1	0	0	0	0	0	0	0	14776	638	22	2		2	SLC5A10	17	18923431	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	6876	18923431	62271779	197	157696											
ALDH3A1	218	broad.mit.edu	37	chr17	19641802	19641802	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcacagggctcagcatccTgcccccaggacgccccaggt	11	17	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19641802	C	C	19641802	1	2	197	0	1	0	0	0	0	0	0	0	497	1595	55	5		5	ALDH3A1	17	19641802	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	718371	19641802	61553408	198	157697											
TRAF4	9618	broad.mit.edu	37	chr17	27076615	27076615	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaggtggggttcgaggGgaaaggacgatggggcatga	21	4	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27076615	A	A	27076615	1	1	197	0	1	0	0	0	0	0	0	0	16567	1247	43	4		4	TRAF4	17	27076615	3'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	7434813	27076615	54118595	199	157698											
CPD	1362	broad.mit.edu	37	chr17	28782632	28782632	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccaaagaagattgtacaTacatcagcagttcagttact	6	9	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28782632	C	C	28782632	1	2	197	0	1	0	0	0	0	0	0	0	3830	1421	49	5		5	CPD	17	28782632	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	1706017	28782632	52412578	200	157699											
CNTNAP1	8506	broad.mit.edu	37	chr17	40837946	40837946	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggagttctcctggcttgaGgtttcactctgtcctgcccc	10	13	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40837946	A	A	40837946	1	1	197	0	1	0	0	0	0	0	0	0	3678	1015	35	4		4	CNTNAP1	17	40837946	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	12055314	40837946	40357264	201	157700											
HOXB1	3211	broad.mit.edu	37	chr17	46608145	46608146	+	Missense_Mutation	DNP	CT	AA	AA													agcggccctcgcttgcatagCtgtcaaccgcctgagccgag							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	46608146	AA	AA	46608145	3	1	197	1	0	0	0	0	1	0	0	0	7366	797	28	3	791	3	HOXB1	17	46608145	Missense_Mutation	DNP	CT	TCGA-67-3774-01A-01D-1040-01	5770199	46608145	34587065	202	157701											
PHOSPHO1	162466	broad.mit.edu	37	chr17	47303942	47303942	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcctctcccaaggccctaTggaaaggtgatgggaaactg	14	10	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47303942	C	C	47303942	1	2	197	0	1	0	0	0	0	0	0	0	11951	1479	51	5		5	PHOSPHO1	17	47303942	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	695797	47303942	33891268	203	157702											
TLK2	11011	broad.mit.edu	37	chr17	60637432	60637432	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaagatgctagagaaatAcaaggaacgattaaatagat	9	4	0	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60637432	T	T	60637432	3	4	197	1	0	0	0	0	1	0	0	0	16067	391	14	5	810	5	TLK2	17	60637432	Missense_Mutation	SNP	A	TCGA-67-3774-01A-01D-1040-01	13333490	60637432	20557778	204	157703											
ABCA8	10351	broad.mit.edu	37	chr17	66880001	66880001	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatcgaagagtaaaaagaAaaatgataaaatgaaggaaa	9	2	0	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66880001	G	G	66880001	3	3	197	1	0	0	0	0	1	0	0	0	38	14	1	5	1275	5	ABCA8	17	66880001	Missense_Mutation	SNP	A	TCGA-67-3774-01A-01D-1040-01	6242569	66880001	14315209	205	157704											
KCTD2	23510	broad.mit.edu	37	chr17	73045504	73045504	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacagatttcaattttgtttGacattttcatcaggcgcatg	7	7	3	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73045504	C	C	73045504	1	2	197	0	1	0	0	0	0	0	0	0	8177	1305	45	4		4	KCTD2	17	73045504	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	6165503	73045504	8149706	206	157705											
GRB2	2885	broad.mit.edu	37	chr17	73328799	73328799	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acggatgtggtttcatttctAtgtagttcttgggaatgaag	12	4	3	1	rs150762903		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73328799	C	C	73328799	3	2	197	1	0	0	0	0	1	0	0	0	6824	449	16	5	511	5	GRB2	17	73328799	Missense_Mutation	SNP	A	TCGA-67-3774-01A-01D-1040-01	283295	73328799	7866411	207	157706											
FASN	2194	broad.mit.edu	37	chr17	80037127	80037127	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcggtggtcaccctcgatGacgtggacggatactttccc	13	12	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80037127	A	A	80037127	2	1	197	1	0	0	0	0	0	0	0	1	5740	1277	45	4		4	FASN	17	80037127	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	6708328	80037127	1158083	208	157707											
DSG1	1828	broad.mit.edu	37	chr18	28908187	28908187	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaaaccagcaagttacAtaccgcatctctggagtagg	10	11	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28908187	T	T	28908187	2	4	197	1	0	0	0	0	0	0	0	1	4816	204	8	5		5	DSG1	18	28908187	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01		28908187	49169061	209	157708											
ASXL3	80816	broad.mit.edu	37	chr18	31323436	31323436	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttctgatgaaaacataccTgtgtcacatttatctgagaa	7	7	3	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31323436	A	A	31323436	2	1	197	1	0	0	0	0	0	0	0	1	1072	1567	55	5		5	ASXL3	18	31323436	Silent	SNP	T	TCGA-67-3774-01A-01D-1040-01	2415249	31323436	46753812	210	157709											
BCL2	596	broad.mit.edu	37	chr18	60985890	60985890	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcgtaccctgttctcccagCgtgcgccatccttcccagag	8	17	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60985890	G	G	60985890	3	3	197	1	0	0	0	0	1	0	0	0	1370	768	27	4	750	4	BCL2	18	60985890	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	29662454	60985890	17091358	211	157710											
SHC2	25759	broad.mit.edu	37	chr19	430712	430712	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaccccacgtcccatggCaggctgcaggcatctcttag	12	14	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	430712	A	A	430712	2	1	197	1	0	0	0	0	0	0	0	1	14384	697	25	3		3	SHC2	19	430712	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01		430712	58698271	212	157711											
STK11	6794	broad.mit.edu	37	chr19	1220371	1220371	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggtgtgtgctgcccgcaGgtacttctgtcagctgattg	14	10	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220371	T	T	1220371	5	4	197	1	0	0	0	0	0	0	1	0	15405	1014	35	2	478	2	STK11	19	1220371	Splice_Site	SNP	G	TCGA-67-3774-01A-01D-1040-01	789659	1220371	57908612	213	157712											
HDGFRP2	84717	broad.mit.edu	37	chr19	4499731	4499731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccggtgaggggcgggtgGggtgggccctgtacctcagt	20	10	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4499731	T	T	4499731	1	4	197	0	1	0	0	0	0	0	0	0	7087	1247	43	2		2	HDGFRP2	19	4499731	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	3279360	4499731	54629252	214	157713											
ZNF560	147741	broad.mit.edu	37	chr19	9580434	9580434	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaggctcatgcaagaaaTggcaaacttttccatgaaac	9	8	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9580434	C	C	9580434	1	2	197	0	1	0	0	0	0	0	0	0	18118	1479	51	5		5	ZNF560	19	9580434	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	5080703	9580434	49548549	215	157714											
ZNF442	79973	broad.mit.edu	37	chr19	12474516	12474516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaacaaggtgattgtcCcaagggttagctttttatag	12	5	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12474516	A	A	12474516	1	1	197	0	1	0	0	0	0	0	0	0	18042	638	22	2		2	ZNF442	19	12474516	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	2894082	12474516	46654467	216	157715											
ZNF43	7594	broad.mit.edu	37	chr19	21991282	21991282	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagctttgaggaccacttAaaagctttgccacattcttc	7	10	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21991282	G	G	21991282	2	3	197	1	0	0	0	0	0	0	0	1	18030	359	13	5		5	ZNF43	19	21991282	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01	9516766	21991282	37137701	217	157716											
ZNF536	9745	broad.mit.edu	37	chr19	30935217	30935217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggctaaccacagcgttcccGacgtggcccacccggtgccc	11	18	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30935217	T	T	30935217	3	4	197	1	0	0	0	0	1	0	0	0	18101	1058	37	3	750	3	ZNF536	19	30935217	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	8943935	30935217	28193766	218	157717											
ZNF536	9745	broad.mit.edu	37	chr19	31038768	31038768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctttgtttcaaagaaCaaatgttgatccttccagcc	7	10	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31038768	A	A	31038768	1	1	197	0	1	0	0	0	0	0	0	0	18101	493	17	3		3	ZNF536	19	31038768	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	103551	31038768	28090215	219	157718											
ZNF536	9745	broad.mit.edu	37	chr19	31039011	31039011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgagatgtcaagcaaaGcttctctgttcatcaggcca	10	9	4	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31039011	T	T	31039011	3	4	197	1	0	0	0	0	1	0	0	0	18101	971	34	3	2495	3	ZNF536	19	31039011	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	243	31039011	28089972	220	157719											
ZNF829	374899	broad.mit.edu	37	chr19	37383369	37383369	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtctcacacattgattcCagatctgaaagaaaatacaa	6	8	2	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37383369	A	A	37383369	2	1	197	1	0	0	0	0	0	0	0	1	18311	581	21	2		2	ZNF829	19	37383369	Silent	SNP	C	TCGA-67-3774-01A-01D-1040-01	6344358	37383369	21745614	221	157720											
HNRNPL	3191	broad.mit.edu	37	chr19	39330766	39330766	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgccatataagcagaagacAttgaagactcggtcacagtt	9	8	1	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39330766	G	G	39330766	2	3	197	1	0	0	0	0	0	0	0	1	7337	214	8	5		5	HNRNPL	19	39330766	Silent	SNP	A	TCGA-67-3774-01A-01D-1040-01	1947397	39330766	19798217	222	157721											
CBLC	23624	broad.mit.edu	37	chr19	45296727	45296727	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctttccctcccgacctcccCcagcactcggacagccagac	6	22	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45296727	G	G	45296727	1	3	197	0	1	0	0	0	0	0	0	0	2728	638	22	4		4	CBLC	19	45296727	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	5965961	45296727	13832256	223	157722											
RELB	5971	broad.mit.edu	37	chr19	45515272	45515272	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgggcgaggggctgccacGcctggtgtctcgcggggctg	19	14	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45515272	C	C	45515272	3	2	197	1	0	0	0	0	1	0	0	0	13325	1087	38	4	248	4	RELB	19	45515272	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	218545	45515272	13613711	224	157723											
MYBPC2	4606	broad.mit.edu	37	chr19	50962129	50962129	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccattggcccctggaatgCgccccggccccccgctgagc	11	20	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50962129	T	T	50962129	1	4	197	0	1	0	0	0	0	0	0	0	10106	783	27	4		4	MYBPC2	19	50962129	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	5446857	50962129	8166854	225	157724											
KLK3	354	broad.mit.edu	37	chr19	51359612	51359612	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtctgcggcggtgttctgGtgcacccccagtgggtcctc	14	14	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51359612	A	A	51359612	3	1	197	1	0	0	0	0	1	0	0	0	8476	1261	44	4	169	4	KLK3	19	51359612	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	397483	51359612	7769371	226	157725											
LILRB1	10859	broad.mit.edu	37	chr19	55143640	55143640	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgcttatgactcgaactctCcctatgagtggtctctaccc	7	13	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55143640	A	A	55143640	3	1	197	1	0	0	0	0	1	0	0	0	8862	855	30	3	627	3	LILRB1	19	55143640	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	3784028	55143640	3985343	227	157726											
LILRB4	11006	broad.mit.edu	37	chr19	55179599	55179599	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagaccactagaagattccGggaacgttgggagtcacctg	12	10	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55179599	A	A	55179599	1	1	197	0	1	0	0	0	0	0	0	0	8865	1131	39	4		4	LILRB4	19	55179599	3'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	35959	55179599	3949384	228	157727											
ZNF835	90485	broad.mit.edu	37	chr19	57175617	57175617	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcggccagagaggcgctcTggctgaagagcgcgccgcag	17	13	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57175617	C	C	57175617	3	2	197	1	0	0	0	0	1	0	0	0	18315	1580	55	5	665	5	ZNF835	19	57175617	Missense_Mutation	SNP	T	TCGA-67-3774-01A-01D-1040-01	1996018	57175617	1953366	229	157728											
SIRPG	55423	broad.mit.edu	37	chr20	1629958	1629958	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgggtcccacgggaagcaggGaggtcacagtgcagtgcaga	17	10	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1629958	A	A	1629958	3	1	197	1	0	0	0	0	1	0	0	0	14449	1174	41	4	1009	4	SIRPG	20	1629958	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01		1629958	61395562	230	157729											
PTPRA	5786	broad.mit.edu	37	chr20	3002719	3002719	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtgggcgacatgaccaacaGaaagccacagcgcctcatca	11	13	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3002719	T	T	3002719	3	4	197	1	0	0	0	0	1	0	0	0	12903	942	33	3	1227	3	PTPRA	20	3002719	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	1372761	3002719	60022801	231	157730											
DYNLRB1	83658	broad.mit.edu	37	chr20	33128489	33128489	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccccaagaatgttaatgtCaatcatgtcagtggactagc	8	11	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33128489	A	A	33128489	1	1	197	0	1	0	0	0	0	0	0	0	4890	841	29	3		3	DYNLRB1	20	33128489	3'UTR	SNP	C	TCGA-67-3774-01A-01D-1040-01	30125770	33128489	29897031	232	157731											
CHD6	84181	broad.mit.edu	37	chr20	40054003	40054003	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcggaggaaactggccaGggcgatttgtctgggtcgga	19	7	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40054003	T	T	40054003	2	4	197	1	0	0	0	0	0	0	0	1	3360	987	35	2		2	CHD6	20	40054003	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	6925514	40054003	22971517	233	157732											
TMEM189-UBE2V1	387522	broad.mit.edu	37	chr20	48700726	48700726	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttacaaatcttacaaagggGggtgcttctgggtatttagg	13	5	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48700726	A	A	48700726	2	1	197	1	0	0	0	0	0	0	0	1	16235	1219	43	4		4	TMEM189-UBE2V1	20	48700726	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	8646723	48700726	14324794	234	157733											
CDH4	1002	broad.mit.edu	37	chr20	60308685	60308685	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacgtagggaggaaatgggtAcacgatggatggatgaatgg	17	3	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60308685	T	T	60308685	1	4	197	0	1	0	0	0	0	0	0	0	3142	406	14	5		5	CDH4	20	60308685	Intron	SNP	A	TCGA-67-3774-01A-01D-1040-01	11607959	60308685	2716835	235	157734											
TAF4	6874	broad.mit.edu	37	chr20	60551116	60551116	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagaaacaggaatataaaActgttccattgtaaagaggt	8	4	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60551116	T	T	60551116	1	4	197	0	1	0	0	0	0	0	0	0	15645	58	2	5		5	TAF4	20	60551116	3'UTR	SNP	A	TCGA-67-3774-01A-01D-1040-01	242431	60551116	2474404	236	157735											
LAMA5	3911	broad.mit.edu	37	chr20	60897373	60897373	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagccaggggcacactcgcGgcactggggtcccatggtcc	15	14	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60897373	A	A	60897373	3	1	197	1	0	0	0	0	1	0	0	0	8681	1116	39	4	4925	4	LAMA5	20	60897373	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	346257	60897373	2128147	237	157736											
CYYR1	116159	broad.mit.edu	37	chr21	27945104	27945104	+	Intron	DEL	C	-	-													ctgcaaaggtcccggtccgtCcagctcaacccacgttagcc							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27945104	-	-	27945104	6	5	197	0	1	1	0	1	0	0	0	0	4244	870	30	0		0	CYYR1	21	27945104	Intron	DEL	C	TCGA-67-3774-01A-01D-1040-01		27945104	20184791	238	157737											
PIGP	51227	broad.mit.edu	37	chr21	38445003	38445003	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcgcatacagacacccagGctggcgcgcgccccgcaaca	12	17	0	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38445003	C	C	38445003	1	2	197	0	1	0	0	0	0	0	0	0	11990	1218	42	4		4	PIGP	21	38445003	5'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	10499899	38445003	9684892	239	157738											
DSCAM	1826	broad.mit.edu	37	chr21	41465695	41465695	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcactgctgttgcctcttCcggctgaagtaacagccacc	8	14	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41465695	T	T	41465695	3	4	197	1	0	0	0	0	1	0	0	0	4808	855	30	4	2287	4	DSCAM	21	41465695	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	3020692	41465695	6664200	240	157739											
PDE9A	5152	broad.mit.edu	37	chr21	44189040	44189040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgtggtttggttggttGgtggttaactggcgcatctt	17	4	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44189040	T	T	44189040	1	4	197	0	1	0	0	0	0	0	0	0	11749	1363	47	2		2	PDE9A	21	44189040	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	2723345	44189040	3940855	241	157740											
CBS	875	broad.mit.edu	37	chr21	44473883	44473887	+	3'UTR	DEL	GCCAG	-	-													ccgtgtgcagggataacggtGccaggccaggcagttaccaa					rs71872941		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44473887	-	-	44473883	6	5	197	0	1	1	0	1	0	0	0	0	2737	1334	46	0		0	CBS	21	44473883	3'UTR	DEL	GCCAG	TCGA-67-3774-01A-01D-1040-01	284843	44473883	3656012	242	157741											
KRTAP10-9	386676	broad.mit.edu	37	chr21	46047658	46047658	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctgtctgctgtaagccTgtctgctgcaaacccatctg	10	13	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46047658	A	A	46047658	2	1	197	1	0	0	0	0	0	0	0	1	8587	1567	55	5		5	KRTAP10-9	21	46047658	Silent	SNP	T	TCGA-67-3774-01A-01D-1040-01	1573775	46047658	2082237	243	157742											
AP1B1	162	broad.mit.edu	37	chr22	29750962	29750962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccaggcgtgatagttcaCgcctgtaatcccagcacttt	10	12	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29750962	A	A	29750962	1	1	197	0	1	0	0	0	0	0	0	0	733	551	19	3		3	AP1B1	22	29750962	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01		29750962	21553604	244	157743											
C22orf42	150297	broad.mit.edu	37	chr22	32546495	32546495	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatagtgacagtcagtgcaTtggtgctgctgaggaatccc	12	9	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32546495	A	A	32546495	1	1	197	0	1	0	0	0	0	0	0	0	2171	1508	52	5		5	C22orf42	22	32546495	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	2795533	32546495	18758071	245	157744											
FBXO7	25793	broad.mit.edu	37	chr22	32883844	32883844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattatttaacttttgggGtgaaactctgtgaaattcat	7	5	2	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32883844	T	T	32883844	1	4	197	0	1	0	0	0	0	0	0	0	5817	1276	44	3		3	FBXO7	22	32883844	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	337349	32883844	18420722	246	157745											
PLA2G6	8398	broad.mit.edu	37	chr22	38511423	38511423	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcacatatgaatgagtgCgtgtgtaaaagccacctgct	11	8	0	2	rs141174626	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38511423	A	A	38511423	1	1	197	0	1	0	0	0	0	0	0	0	12103	783	27	3		3	PLA2G6	22	38511423	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	5627579	38511423	12793143	247	157746											
APOBEC3G	60489	broad.mit.edu	37	chr22	39479863	39479863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacctgggtcctgctgaacCagcgcaggggctttctatgc	12	13	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39479863	A	A	39479863	3	1	197	1	0	0	0	0	1	0	0	0	796	595	21	2	727	2	APOBEC3G	22	39479863	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	968440	39479863	11824703	248	157747											
SULT4A1	25830	broad.mit.edu	37	chr22	44221917	44221917	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgaggtcacactttccCatcttctgtttatacaccaa	5	12	3	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44221917	T	T	44221917	3	4	197	1	0	0	0	0	1	0	0	0	15501	594	21	4	39	4	SULT4A1	22	44221917	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	4742054	44221917	7082649	249	157748											
POLA1	5422	broad.mit.edu	37	chrX	24861649	24861649	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaattttttgtatacttctCctgacttatgtagggaacag	8	6	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24861649	T	T	24861649	1	4	197	0	1	0	0	0	0	0	0	0	12282	870	30	4		4	POLA1	23	24861649	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01		24861649	130408911	250	157749											
IL1RAPL1	11141	broad.mit.edu	37	chrX	29973554	29973554	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatagaacccattacacatGagcaggctttagatgtcagt	10	8	1	3			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29973554	T	T	29973554	4	4	197	1	0	0	0	0	0	1	0	0	7731	1291	45	3	1746	3	IL1RAPL1	23	29973554	Nonsense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	5111905	29973554	125297006	251	157750											
SPANXN5	494197	broad.mit.edu	37	chrX	52826469	52826469	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatattgaagcttcccagtgGcccagagctcttgccctccc	8	15	1	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52826469	A	A	52826469	1	1	197	0	1	0	0	0	0	0	0	0	15110	1218	42	4		4	SPANXN5	23	52826469	5'Flank	SNP	G	TCGA-67-3774-01A-01D-1040-01	22852915	52826469	102444091	252	157751											
HUWE1	10075	broad.mit.edu	37	chrX	53652847	53652852	+	Intron	DEL	GCCGGT	-	-													gggccggggccggggccgggGccggtgccgggactgggacc					rs11091285	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652847	6	5	197	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652847	Intron	DEL	GCCGGT	TCGA-67-3774-01A-01D-1040-01	826378	53652847	101617713	253	157752											
FGD1	2245	broad.mit.edu	37	chrX	54497671	54497671	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttctaacaaaccctcttctCtgccactggctaacttctcc	3	17	4	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54497671	T	T	54497671	1	4	197	0	1	0	0	0	0	0	0	0	5889	928	32	4		4	FGD1	23	54497671	Intron	SNP	C	TCGA-67-3774-01A-01D-1040-01	844824	54497671	100772889	254	157753											
ITIH5L	347365	broad.mit.edu	37	chrX	54784148	54784148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggggtgcgatggagcacCaggtttggaatgcagtggag	19	5	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54784148	A	A	54784148	3	1	197	1	0	0	0	0	1	0	0	0	7978	594	21	2	1606	2	ITIH5L	23	54784148	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	286477	54784148	100486412	255	157754											
MAGEH1	28986	broad.mit.edu	37	chrX	55479576	55479576	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgattgggggcgggggacaCtgtatttgatatttgtgatc	15	5	0	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55479576	A	A	55479576	1	1	197	0	1	0	0	0	0	0	0	0	9280	580	20	3		3	MAGEH1	23	55479576	3'UTR	SNP	C	TCGA-67-3774-01A-01D-1040-01	695428	55479576	99790984	256	157755											
ARHGEF9	23229	broad.mit.edu	37	chrX	62974284	62974284	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctttccctgtctctgtcTgtgattttttttttttctcg	5	10	4	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62974284	A	A	62974284	1	1	197	0	1	0	0	0	0	0	0	0	914	1595	55	5		5	ARHGEF9	23	62974284	5'UTR	SNP	T	TCGA-67-3774-01A-01D-1040-01	7494708	62974284	92296276	257	157756											
CITED1	4435	broad.mit.edu	37	chrX	71522132	71522132	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacaccatagtaaccctgcTcctggcttgtccttcaccat	6	16	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71522132	C	C	71522132	1	2	197	0	1	0	0	0	0	0	0	0	3470	1566	54	5		5	CITED1	23	71522132	Intron	SNP	T	TCGA-67-3774-01A-01D-1040-01	8547848	71522132	83748428	258	157757											
POF1B	79983	broad.mit.edu	37	chrX	84561281	84561284	+	Frame_Shift_Del	DEL	AGAG	-	-													tgtctgatagtgtatgtcgaAgagagagattgttttcttcc							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84561284	-	-	84561281	7	5	197	1	0	1	0	1	0	0	0	0	12277	72	3	0	570	0	POF1B	23	84561281	Frame_Shift_Del	DEL	AGAG	TCGA-67-3774-01A-01D-1040-01	13039149	84561281	70709279	259	157758											
PCDH19	57526	broad.mit.edu	37	chrX	99663203	99663203	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctccagctcgatctgtgcTgccgggaaactgggcgcatt	12	12	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99663203	A	A	99663203	2	1	197	1	0	0	0	0	0	0	0	1	11608	1567	55	5		5	PCDH19	23	99663203	Silent	SNP	T	TCGA-67-3774-01A-01D-1040-01	15101922	99663203	55607357	260	157759											
COL4A6	1288	broad.mit.edu	37	chrX	107408255	107408255	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggacctgggggtccagcGgggcctgggcggcctaggga	23	10	0	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107408255	T	T	107408255	2	4	197	1	0	0	0	0	0	0	0	1	3727	1103	39	1		1	COL4A6	23	107408255	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	7745052	107408255	47862305	261	157760											
CAPN6	827	broad.mit.edu	37	chrX	110489771	110489771	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacggaaaataaaagggtgGcacgctttgtcaggattctc	12	7	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110489771	A	A	110489771	1	1	197	0	1	0	0	0	0	0	0	0	2656	1218	42	4		4	CAPN6	23	110489771	3'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	3081516	110489771	44780789	262	157761											
CT47B1	643311	broad.mit.edu	37	chrX	120008919	120008919	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctggcactgcaggctctggGaccgacgcggcctcctggac	15	15	1	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120008919	T	T	120008919	2	4	197	1	0	0	0	0	0	0	0	1	4023	1161	41	3		3	CT47B1	23	120008919	Silent	SNP	G	TCGA-67-3774-01A-01D-1040-01	9519148	120008919	35261641	263	157762											
GLUD2	2747	broad.mit.edu	37	chrX	120181507	120181507	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaaagcgcacctgttccgcGaccgtcacgcacccctcctc	8	19	1	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120181507	C	C	120181507	1	2	197	0	1	0	0	0	0	0	0	0	6541	1073	37	4		4	GLUD2	23	120181507	5'UTR	SNP	G	TCGA-67-3774-01A-01D-1040-01	172588	120181507	35089053	264	157763											
ACTRT1	139741	broad.mit.edu	37	chrX	127185520	127185520	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctttctctggctccaaggcGatgtagcacaacttctcttt	7	12	3	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127185520	C	C	127185520	3	2	197	1	0	0	0	0	1	0	0	0	218	1048	37	4	468	4	ACTRT1	23	127185520	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	7004013	127185520	28085040	265	157764											
UTP14A	10813	broad.mit.edu	37	chrX	129045156	129045156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaggtggtctattaagGgaaagaaattgaattgacaa	12	2	1	4			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129045156	T	T	129045156	1	4	197	0	1	0	0	0	0	0	0	0	17222	1247	43	2		2	UTP14A	23	129045156	Intron	SNP	G	TCGA-67-3774-01A-01D-1040-01	1859636	129045156	26225404	266	157765											
BCORL1	63035	broad.mit.edu	37	chrX	129154963	129154963	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctacctctccacagtgcCggaagctgcccagtgacccc	8	19	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129154963	T	T	129154963	3	4	197	1	0	0	0	0	1	0	0	0	1392	643	23	4	3459	4	BCORL1	23	129154963	Missense_Mutation	SNP	C	TCGA-67-3774-01A-01D-1040-01	109807	129154963	26115597	267	157766											
CXorf48	54967	broad.mit.edu	37	chrX	134305157	134305157	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgaagcacgaggcctcctCagtaagggaagccctcaggt	13	11	2	1			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134305157	A	A	134305157	1	1	197	0	1	0	0	0	0	0	0	0	4144	841	29	3		3	CXorf48	23	134305157	5'UTR	SNP	C	TCGA-67-3774-01A-01D-1040-01	5150194	134305157	20965403	268	157767											
CDR1	1038	broad.mit.edu	37	chrX	139865672	139865672	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatcttccagctaatccaTgtcttccagaaaaatctgtg	6	11	3	2			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139865672	C	C	139865672	1	2	197	0	1	0	0	0	0	0	0	0	3201	1479	51	5		5	CDR1	23	139865672	3'UTR	SNP	T	TCGA-67-3774-01A-01D-1040-01	5560515	139865672	15404888	269	157768											
ZNF275	10838	broad.mit.edu	37	chrX	152610347	152610348	+	Intron	INS	-	A	A													cctgggttgtggggaaacacINSaatgggtctgccacacctga							TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152610348	A	A	152610347	6	5	197	0	1	1	1	0	0	0	0	0	17936	493	17	0		0	ZNF275	23	152610347	Intron	INS	-	TCGA-67-3774-01A-01D-1040-01	12744675	152610347	2660213	270	157769											
F8	2157	broad.mit.edu	37	chrX	154157209	154157209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctttcacaagcgttcaggGacaaaatggtatcctttttc	8	9	2	0			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154157209	T	T	154157209	3	4	197	1	0	0	0	0	1	0	0	0	5393	1174	41	3	2279	3	F8	23	154157209	Missense_Mutation	SNP	G	TCGA-67-3774-01A-01D-1040-01	1546862	154157209	1113351	271	157770											
SDF4	51150	broad.mit.edu	37	chr1	1154154	1154154	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacccagcctcacccaggTcccggacgatctccttcacc	8	19	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1154154	C	C	1154154	3	2	198	1	0	0	0	0	1	0	0	0	14075	1667	58	5	485	5	SDF4	1	1154154	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08		1154154	248096467	1	157771											
MTOR	2475	broad.mit.edu	37	chr1	11227545	11227545	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attctaacactccggccgctGcctccggctgctgtagctta	9	15	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11227545	A	A	11227545	3	1	198	1	0	0	0	0	1	0	0	0	10048	1319	46	4	3486	4	MTOR	1	11227545	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	10073391	11227545	238023076	2	157772											
PRAMEF11	440560	broad.mit.edu	37	chr1	12887308	12887308	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcccaggtatggggtaaaCtgtgtcaggatgggcagtat	16	6	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12887308	G	G	12887308	3	3	198	1	0	0	0	0	1	0	0	0	12528	564	20	4	769	4	PRAMEF11	1	12887308	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1659763	12887308	236363313	3	157773											
PADI1	29943	broad.mit.edu	37	chr1	17552330	17552330	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcgctggggccctgagGgctatggggctatcttgctg	17	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17552330	T	T	17552330	3	4	198	1	0	0	0	0	1	0	0	0	11471	1232	43	2	451	2	PADI1	1	17552330	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4665022	17552330	231698291	4	157774											
CELA3A	10136	broad.mit.edu	37	chr1	22336244	22336244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacagaggatggtggctGgcaggtccacggtgtgacca	15	12	0	2	rs146504981		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22336244	T	T	22336244	3	4	198	1	0	0	0	0	1	0	0	0	3243	1357	47	2	715	2	CELA3A	1	22336244	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4783914	22336244	226914377	5	157775											
GRHL3	57822	broad.mit.edu	37	chr1	24664453	24664453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggctctaggaagaggccgGgagtgactgtgaccaactgt	15	9	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24664453	T	T	24664453	1	4	198	0	1	0	0	0	0	0	0	0	6831	1247	43	2		2	GRHL3	1	24664453	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	2328209	24664453	224586168	6	157776											
PIGV	55650	broad.mit.edu	37	chr1	27120800	27120800	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccttctttcctggtttccCcttggccctgctggtgggga	12	13	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27120800	T	T	27120800	3	4	198	1	0	0	0	0	1	0	0	0	11996	623	22	4	281	4	PIGV	1	27120800	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2456347	27120800	222129821	7	157777											
FAM76A	199870	broad.mit.edu	37	chr1	28065777	28065777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgaaggatgtgtgttcGcctactgccaagtagaagaa	12	6	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28065777	T	T	28065777	1	4	198	0	1	0	0	0	0	0	0	0	5677	1102	38	3		3	FAM76A	1	28065777	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	944977	28065777	221184844	8	157778											
COL16A1	1307	broad.mit.edu	37	chr1	32146700	32146700	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcccagagtcagagggtgAgactgggcagcggccagcca	17	11	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32146700	T	T	32146700	1	4	198	0	1	0	0	0	0	0	0	0	3705	319	11	5		5	COL16A1	1	32146700	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	4080923	32146700	217103921	9	157779											
LCK	3932	broad.mit.edu	37	chr1	32741687	32741687	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccgacgggacccctccCccgtgccctatcagcctatc	9	20	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32741687	A	A	32741687	1	1	198	0	1	0	0	0	0	0	0	0	8748	638	22	2		2	LCK	1	32741687	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	594987	32741687	216508934	10	157780											
AK2	204	broad.mit.edu	37	chr1	33480108	33480108	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagaaaaggaaattttttgtCctgagtttacatacgtcatc	7	6	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33480108	G	G	33480108	1	3	198	0	1	0	0	0	0	0	0	0	440	870	30	4		4	AK2	1	33480108	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	738421	33480108	215770513	11	157781											
ZMYM4	9202	broad.mit.edu	37	chr1	35847280	35847280	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggttactgttacagtgggtCgggacaatgccacatgcttc	13	9	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35847280	G	G	35847280	3	3	198	1	0	0	0	0	1	0	0	0	17828	893	31	4	1524	4	ZMYM4	1	35847280	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2367172	35847280	213403341	12	157782											
CLSPN	63967	broad.mit.edu	37	chr1	36202032	36202032	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cattggctggagtgtcaattCcaactttcagtgctagaaac	9	9	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36202032	A	A	36202032	1	1	198	0	1	0	0	0	0	0	0	0	3592	870	30	3		3	CLSPN	1	36202032	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	354752	36202032	213048589	13	157783											
C1orf113	79729	broad.mit.edu	37	chr1	36786257	36786257	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcctatcaagccgcctccaGactcccaagagacgctcgcg	9	17	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36786257	T	T	36786257	3	4	198	1	0	0	0	0	1	0	0	0	2006	942	33	3	2047	3	C1orf113	1	36786257	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	584225	36786257	212464364	14	157784											
C1orf113	79729	broad.mit.edu	37	chr1	36786292	36786292	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcgcgctcccctcgctggtCccgcaaaactacacggaaaa	8	17	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36786292	A	A	36786292	2	1	198	1	0	0	0	0	0	0	0	1	2006	842	30	3		3	C1orf113	1	36786292	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	35	36786292	212464329	15	157785											
IPO13	9670	broad.mit.edu	37	chr1	44415696	44415697	+	Missense_Mutation	DNP	AG	CC	CC													gtgtttctccagctgggtgcAgctggaggtgccgctgcagg							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	44415697	CC	CC	44415696	3	2	198	1	0	0	0	0	1	0	0	0	7864	188	7	5	698	5	IPO13	1	44415696	Missense_Mutation	DNP	AG	TCGA-67-4679-01B-01D-1753-08	7629404	44415696	204834925	16	157786											
SPATA6	54558	broad.mit.edu	37	chr1	48865286	48865286	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtctgccatgtgatttttCaactggagccaaatggtaaa	9	8	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48865286	A	A	48865286	4	1	198	1	0	0	0	0	0	1	0	0	15129	835	29	3	977	3	SPATA6	1	48865286	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4449590	48865286	200385335	17	157787											
C8A	731	broad.mit.edu	37	chr1	57347232	57347232	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcttcgatatgactccacCtgtgaacgtctctactatgg	9	11	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57347232	T	T	57347232	2	4	198	1	0	0	0	0	0	0	0	1	2441	668	24	4		4	C8A	1	57347232	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	8481946	57347232	191903389	18	157788											
LEPR	3953	broad.mit.edu	37	chr1	66101910	66101910	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctttttatcaagcatacaGcatcagtgacatgtggtcct	7	9	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66101910	A	A	66101910	3	1	198	1	0	0	0	0	1	0	0	0	8800	971	34	4	3010	4	LEPR	1	66101910	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	8754678	66101910	183148711	19	157789											
SLC44A5	204962	broad.mit.edu	37	chr1	75685529	75685529	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcagattgagagcaaaatGaaagttaaagctggatagac	11	4	0	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75685529	C	C	75685529	3	2	198	1	0	0	0	0	1	0	0	0	14753	1281	45	4	1176	4	SLC44A5	1	75685529	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	9583619	75685529	173565092	20	157790											
MCOLN3	55283	broad.mit.edu	37	chr1	85494886	85494886	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggccttgttgtcaaatgtTatctgtgaagacaggaaaac	11	6	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85494886	C	C	85494886	3	2	198	1	0	0	0	0	1	0	0	0	9490	1744	61	5	954	5	MCOLN3	1	85494886	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	9809357	85494886	163755735	21	157791											
SNX7	51375	broad.mit.edu	37	chr1	99204076	99204076	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctctggtagcttggttttGatgaagttgtcagttaccat	10	7	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99204076	A	A	99204076	1	1	198	0	1	0	0	0	0	0	0	0	15021	1305	45	4		4	SNX7	1	99204076	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	13709190	99204076	150046545	22	157792											
LPPR5	163404	broad.mit.edu	37	chr1	99387651	99387651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgacttttcatgaaGgtatttcctttattagcata	5	5	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99387651	T	T	99387651	1	4	198	0	1	0	0	0	0	0	0	0	9015	1015	35	2		2	LPPR5	1	99387651	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	183575	99387651	149862970	23	157793											
OLFM3	118427	broad.mit.edu	37	chr1	102462215	102462215	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgaaagagctgtctctcgtCccgtttttgacatatttatt	7	9	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102462215	A	A	102462215	1	1	198	0	1	0	0	0	0	0	0	0	10949	870	30	3		3	OLFM3	1	102462215	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3074564	102462215	146788406	24	157794											
AMPD2	271	broad.mit.edu	37	chr1	110170267	110170267	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagccctcgacttccccGcagtctacttccctcttggc	8	18	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110170267	A	A	110170267	1	1	198	0	1	0	0	0	0	0	0	0	586	1102	38	4		4	AMPD2	1	110170267	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	7708052	110170267	139080354	25	157795											
DENND2D	79961	broad.mit.edu	37	chr1	111730977	111730977	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggcctgaaacatgctcgTtgatttgttctgcagctgca	12	9	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111730977	C	C	111730977	3	2	198	1	0	0	0	0	1	0	0	0	4471	1725	60	5	308	5	DENND2D	1	111730977	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	1560710	111730977	137519644	26	157796											
HAO2	51179	broad.mit.edu	37	chr1	119925620	119925620	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggaggagatcagtgccCctatttgtatcgcacccaca	11	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119925620	A	A	119925620	3	1	198	1	0	0	0	0	1	0	0	0	7018	623	22	2	220	2	HAO2	1	119925620	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	8194643	119925620	129325001	27	157797											
NOTCH2	4853	broad.mit.edu	37	chr1	120510025	120510025	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagaacagtccctcctctCtagacccaacatgctgatgg	7	14	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120510025	G	G	120510025	1	3	198	0	1	0	0	0	0	0	0	0	10643	928	32	4		4	NOTCH2	1	120510025	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	584405	120510025	128740596	28	157798											
NOTCH2	4853	broad.mit.edu	37	chr1	120510080	120510080	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgcacagacatgtgaagcCtccaatcttatccagacagg	8	12	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120510080	G	G	120510080	3	3	198	1	0	0	0	0	1	0	0	0	10643	681	24	4	6094	4	NOTCH2	1	120510080	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	55	120510080	128740541	29	157799											
NBPF10	100132406	broad.mit.edu	37	chr1	145297798	145297798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatgcccgcattcccttGgccacagtatgtgaaattga	8	12	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145297798	T	T	145297798	1	4	198	0	1	0	0	0	0	0	0	0	10287	1363	47	2		2	NBPF10	1	145297798	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	24787718	145297798	103952823	30	157800											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149399202	149399202	+	RNA	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcgcgaaaaaagagaacaGagacttaaagaagtaatccg	10	6	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149399202	C	C	149399202	1	2	198	0	1	0	0	0	0	0	0	0	7247	957	33	4		4	HIST2H2BF	1	149399202	RNA	SNP	G	TCGA-67-4679-01B-01D-1753-08	4101404	149399202	99851419	31	157801											
SEMA6C	10500	broad.mit.edu	37	chr1	151108806	151108806	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctcttcggccccactgccAccccactatagctccccacc	5	22	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151108806	T	T	151108806	1	4	198	0	1	0	0	0	0	0	0	0	14154	174	6	5		5	SEMA6C	1	151108806	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	1709604	151108806	98141815	32	157802											
C1orf189	388701	broad.mit.edu	37	chr1	154172963	154172963	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgctttttggccagtgccAattcctgtaccatggtgtcc	10	11	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154172963	T	T	154172963	4	4	198	1	0	0	0	0	0	1	0	0	2042	131	5	5	137	5	C1orf189	1	154172963	Nonsense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	3064157	154172963	95077658	33	157803											
TRIM46	80128	broad.mit.edu	37	chr1	155149759	155149759	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggaggaggccgtgaggcAcaccgaggtgagggagggca	21	8	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155149759	T	T	155149759	3	4	198	1	0	0	0	0	1	0	0	0	16646	159	6	5	920	5	TRIM46	1	155149759	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	976796	155149759	94100862	34	157804											
OR10K2	391107	broad.mit.edu	37	chr1	158390486	158390486	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaaggaagaagtacatgggGatatgaagggccctgtccag	15	7	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158390486	C	C	158390486	3	2	198	1	0	0	0	0	1	0	0	0	11008	1164	41	4	769	4	OR10K2	1	158390486	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3240727	158390486	90860135	35	157805											
PYHIN1	149628	broad.mit.edu	37	chr1	158908179	158908179	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatacatcttccttttttcTgcattagttgcaaataaaat	3	7	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158908179	G	G	158908179	1	3	198	0	1	0	0	0	0	0	0	0	12973	1595	55	5		5	PYHIN1	1	158908179	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	517693	158908179	90342442	36	157806											
ATP1A4	480	broad.mit.edu	37	chr1	160121797	160121797	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctcagctttcttcccacAgttgagctcgggcagctctt	8	14	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160121797	T	T	160121797	1	4	198	0	1	0	0	0	0	0	0	0	1135	203	7	5		5	ATP1A4	1	160121797	5'UTR	SNP	A	TCGA-67-4679-01B-01D-1753-08	1213618	160121797	89128824	37	157807											
VANGL2	57216	broad.mit.edu	37	chr1	160393962	160393962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagccatctttgcatccatGgcccgtgccatgcagaagta	9	13	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160393962	T	T	160393962	3	4	198	1	0	0	0	0	1	0	0	0	17247	1348	47	2	1216	2	VANGL2	1	160393962	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	272165	160393962	88856659	38	157808											
ITLN1	55600	broad.mit.edu	37	chr1	160850238	160850238	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagttcagatctcaaaggCagccatgcaaatcaagtggg	10	8	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160850238	G	G	160850238	1	3	198	0	1	0	0	0	0	0	0	0	7980	725	25	4		4	ITLN1	1	160850238	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	456276	160850238	88400383	39	157809											
ATF6	22926	broad.mit.edu	37	chr1	161736078	161736078	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgtctcgtcagcgttacGgagtattttgtccgcctgcc	10	14	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161736078	A	A	161736078	1	1	198	0	1	0	0	0	0	0	0	0	1088	1131	39	4		4	ATF6	1	161736078	5'Flank	SNP	G	TCGA-67-4679-01B-01D-1753-08	885840	161736078	87514543	40	157810											
DDR2	4921	broad.mit.edu	37	chr1	162724680	162724680	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catccagatcctggatgtccAagaccatattttgacttagg	8	10	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162724680	T	T	162724680	1	4	198	0	1	0	0	0	0	0	0	0	4370	145	5	5		5	DDR2	1	162724680	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	988602	162724680	86525941	41	157811											
F5	2153	broad.mit.edu	37	chr1	169493096	169493096	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttctacactccaagcattAtaagatccaccattgtttaa	3	10	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169493096	T	T	169493096	4	4	198	1	0	0	0	0	0	1	0	0	5391	456	16	5	863	5	F5	1	169493096	Nonsense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	6768416	169493096	79757525	42	157812											
FMO1	2326	broad.mit.edu	37	chr1	171254553	171254553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagaaatgccatcatgaCccagtgggaccgaacattca	9	12	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171254553	A	A	171254553	3	1	198	1	0	0	0	0	1	0	0	0	6012	507	18	3	1499	3	FMO1	1	171254553	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1761457	171254553	77996068	43	157813											
SLC9A11	284525	broad.mit.edu	37	chr1	173545825	173545825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattacaagttcgatcttcgGtttaaaagttaaagaatcta	6	5	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173545825	T	T	173545825	3	4	198	1	0	0	0	0	1	0	0	0	14825	1261	44	3	2581	3	SLC9A11	1	173545825	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2291272	173545825	75704796	44	157814											
TNR	7143	broad.mit.edu	37	chr1	175335276	175335276	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcggggactgtcaagttcTgtggattgacataaatggcc	12	8	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175335276	A	A	175335276	5	1	198	1	0	0	0	0	0	0	1	0	16461	1594	55	5	2076	5	TNR	1	175335276	Splice_Site	SNP	T	TCGA-67-4679-01B-01D-1753-08	1789451	175335276	73915345	45	157815											
TOR1AIP1	26092	broad.mit.edu	37	chr1	179873207	179873207	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgagcttggtcaaatgaTgttcctatttttgaagatcc	9	7	1	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179873207	A	A	179873207	1	1	198	0	1	0	0	0	0	0	0	0	16496	1479	51	5		5	TOR1AIP1	1	179873207	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	4537931	179873207	69377414	46	157816											
CACNA1E	777	broad.mit.edu	37	chr1	181741171	181741171	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gataggatctgcagagctgcTcctgctaaccaaaatgtctc	9	11	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181741171	C	C	181741171	1	2	198	0	1	0	0	0	0	0	0	0	2568	1566	54	5		5	CACNA1E	1	181741171	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	1867964	181741171	67509450	47	157817											
DHX9	1660	broad.mit.edu	37	chr1	182822417	182822417	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctacagttatgactcattaAgagaattttttttcttttaa	4	5	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182822417	G	G	182822417	1	3	198	0	1	0	0	0	0	0	0	0	4556	87	3	5		5	DHX9	1	182822417	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	1081246	182822417	66428204	48	157818											
KCNT2	343450	broad.mit.edu	37	chr1	196251343	196251343	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaattagcaaagtacacggTagatagatttcagaaccttc	8	7	1	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196251343	A	A	196251343	1	1	198	0	1	0	0	0	0	0	0	0	8162	1653	57	5		5	KCNT2	1	196251343	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	13428926	196251343	52999278	49	157819											
CFH	3075	broad.mit.edu	37	chr1	196658675	196658675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgatgaacattttgagactCcgtcaggaagttactgggat	12	6	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196658675	A	A	196658675	3	1	198	1	0	0	0	0	1	0	0	0	3313	855	30	3	1120	3	CFH	1	196658675	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	407332	196658675	52591946	50	157820											
ASPM	259266	broad.mit.edu	37	chr1	197087023	197087023	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgccaatatttctgaatgaCgagtgctgcattaactcttt	7	9	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197087023	A	A	197087023	3	1	198	1	0	0	0	0	1	0	0	0	1060	536	19	3	6520	3	ASPM	1	197087023	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	428348	197087023	52163598	51	157821											
KIF21B	23046	broad.mit.edu	37	chr1	200969136	200969136	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggattaggaaggctgccccTgccctgagcacatgggcagg	15	11	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200969136	A	A	200969136	1	1	198	0	1	0	0	0	0	0	0	0	8359	1595	55	5		5	KIF21B	1	200969136	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	3882113	200969136	48281485	52	157822											
CSRP1	1465	broad.mit.edu	37	chr1	201459268	201459268	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagggtgggggagagagCtcaagaaaaaggttgggagg	19	3	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201459268	A	A	201459268	1	1	198	0	1	0	0	0	0	0	0	0	4000	812	28	3		3	CSRP1	1	201459268	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	490132	201459268	47791353	53	157823											
LAX1	54900	broad.mit.edu	37	chr1	203740015	203740015	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggactcctcgccatcctccTggtcgttgcggttttctgca	11	14	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203740015	A	A	203740015	3	1	198	1	0	0	0	0	1	0	0	0	8720	1580	55	5	200	5	LAX1	1	203740015	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	2280747	203740015	45510606	54	157824											
PLEKHA6	22874	broad.mit.edu	37	chr1	204316372	204316372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtgcctctcctctttccCtttgtattcgtcattttggc	8	13	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204316372	A	A	204316372	1	1	198	0	1	0	0	0	0	0	0	0	12155	696	24	2		2	PLEKHA6	1	204316372	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	576357	204316372	44934249	55	157825											
NUCKS1	64710	broad.mit.edu	37	chr1	205688812	205688812	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgccggaatcttctgagaaGaaagaagaatttcaacatct	8	8	4	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205688812	A	A	205688812	1	1	198	0	1	0	0	0	0	0	0	0	10815	957	33	4		4	NUCKS1	1	205688812	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1372440	205688812	43561809	56	157826											
RD3	343035	broad.mit.edu	37	chr1	211652548	211652548	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccgcaggctccactggcGcgtcagcttgtgggcctcct	15	15	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211652548	A	A	211652548	3	1	198	1	0	0	0	0	1	0	0	0	13295	1087	38	4	173	4	RD3	1	211652548	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	5963736	211652548	37598073	57	157827											
TATDN3	128387	broad.mit.edu	37	chr1	212977679	212977679	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggttggactagatttctcCcccagatttgctggcactgg	11	10	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212977679	T	T	212977679	2	4	198	1	0	0	0	0	0	0	0	1	15712	610	22	4		4	TATDN3	1	212977679	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	1325131	212977679	36272942	58	157828											
USH2A	7399	broad.mit.edu	37	chr1	215940153	215940153	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaagcaagcaagaaatAaagtgcaccttaagaggatt	9	5	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215940153	C	C	215940153	1	2	198	0	1	0	0	0	0	0	0	0	17162	377	13	5		5	USH2A	1	215940153	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	2962474	215940153	33310468	59	157829											
FAM177B	400823	broad.mit.edu	37	chr1	222923143	222923143	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtagaagaaggtagttgGgtgagaaggctcagattgct	16	3	1	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222923143	T	T	222923143	1	4	198	0	1	0	0	0	0	0	0	0	5547	1247	43	2		2	FAM177B	1	222923143	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	6982990	222923143	26327478	60	157830											
SUSD4	55061	broad.mit.edu	37	chr1	223402684	223402684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcgctcacaaggccgcggGtggcagacgaaatctccgtg	14	12	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223402684	T	T	223402684	3	4	198	1	0	0	0	0	1	0	0	0	15528	1252	44	3	717	3	SUSD4	1	223402684	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	479541	223402684	25847937	61	157831											
SUSD4	55061	broad.mit.edu	37	chr1	223536632	223536632	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactcaccgcccgtgagctGtgcagggccgaagcacagcg	13	15	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223536632	A	A	223536632	4	1	198	1	0	0	0	0	0	1	0	0	15528	1386	48	4	1521	4	SUSD4	1	223536632	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	133948	223536632	25713989	62	157832											
PARP1	142	broad.mit.edu	37	chr1	226558083	226558083	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacccccaggtctcaccccCtaagtcggccagaggagggt	11	17	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226558083	T	T	226558083	1	4	198	0	1	0	0	0	0	0	0	0	11548	696	24	4		4	PARP1	1	226558083	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3021451	226558083	22692538	63	157833											
RHOU	58480	broad.mit.edu	37	chr1	228871753	228871753	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttcgacaacttctccggTgagctggccggggggccggg	17	13	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228871753	A	A	228871753	5	1	198	1	0	0	0	0	0	0	1	0	13454	1710	59	5	266	5	RHOU	1	228871753	Splice_Site	SNP	T	TCGA-67-4679-01B-01D-1753-08	2313670	228871753	20378868	64	157834											
ACTA1	58	broad.mit.edu	37	chr1	229568145	229568145	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcataaatgggcacgttgTgggtgacgccgtcgccggag	15	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229568145	A	A	229568145	3	1	198	1	0	0	0	0	1	0	0	0	191	1696	59	5	661	5	ACTA1	1	229568145	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	696392	229568145	19682476	65	157835											
SIPA1L2	57568	broad.mit.edu	37	chr1	232538195	232538195	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctgattgactttcccGgtcagtggtgatggagaacg	13	9	1	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232538195	T	T	232538195	2	4	198	1	0	0	0	0	0	0	0	1	14443	1103	39	1		1	SIPA1L2	1	232538195	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	2970050	232538195	16712426	66	157836											
SIPA1L2	57568	broad.mit.edu	37	chr1	232601023	232601023	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccattgctcgaaacttttCtgatttatgggctgcatttt	9	8	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232601023	A	A	232601023	4	1	198	1	0	0	0	0	0	1	0	0	14443	922	32	3	2845	3	SIPA1L2	1	232601023	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	62828	232601023	16649598	67	157837											
TBCE	6905	broad.mit.edu	37	chr1	235605137	235605137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttaaacagaatatggtGcacctgaagattgggaactc	9	7	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235605137	T	T	235605137	3	4	198	1	0	0	0	0	1	0	0	0	15756	1319	46	3	1329	3	TBCE	1	235605137	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3004114	235605137	13645484	68	157838											
LYST	1130	broad.mit.edu	37	chr1	235845625	235845625	+	Intron	DEL	C	-	-													aaagggcaagaccctgtatgCccaagaagaaagtggagaaa							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	235845625	-	-	235845625	6	5	198	0	1	1	0	1	0	0	0	0	9216	754	26	0		0	LYST	1	235845625	Intron	DEL	C	TCGA-67-4679-01B-01D-1753-08	240488	235845625	13404996	69	157839											
HEATR1	55127	broad.mit.edu	37	chr1	236744486	236744487	+	Intron	DNP	GG	AA	AA													tagagaaagcatgaacagttGgtcatgacaaaacataacaa							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	236744487	AA	AA	236744486	1	1	198	0	1	0	0	0	0	0	0	0	7094	1363	47	4		4	HEATR1	1	236744486	Intron	DNP	GG	TCGA-67-4679-01B-01D-1753-08	898861	236744486	12506135	70	157840											
RYR2	6262	broad.mit.edu	37	chr1	237765331	237765331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgtatttcaggtggaaCcgagtacaaaattatttcct	7	6	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237765331	A	A	237765331	3	1	198	1	0	0	0	0	1	0	0	0	13880	507	18	3	4741	3	RYR2	1	237765331	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1020845	237765331	11485290	71	157841											
RYR2	6262	broad.mit.edu	37	chr1	237777866	237777866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggacccagttggagggaCtactgaattcctctttgtac	11	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237777866	A	A	237777866	3	1	198	1	0	0	0	0	1	0	0	0	13880	565	20	3	5584	3	RYR2	1	237777866	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	12535	237777866	11472755	72	157842											
RYR2	6262	broad.mit.edu	37	chr1	237880449	237880449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagtcatagtggttctaCatgtgagaaaagcaggttca	12	5	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237880449	A	A	237880449	1	1	198	0	1	0	0	0	0	0	0	0	13880	493	17	3		3	RYR2	1	237880449	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	102583	237880449	11370172	73	157843											
RYR2	6262	broad.mit.edu	37	chr1	237895442	237895442	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagtcggacagctttaacaGagaaatggtatggttgggag	14	4	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237895442	T	T	237895442	4	4	198	1	0	0	0	0	0	1	0	0	13880	943	33	3	11342	3	RYR2	1	237895442	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	14993	237895442	11355179	74	157844											
FMN2	56776	broad.mit.edu	37	chr1	240370521	240370521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcgacagccatcagccCacacagagcatctcacagcc	7	18	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240370521	A	A	240370521	2	1	198	1	0	0	0	0	0	0	0	1	6008	581	21	2		2	FMN2	1	240370521	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	2475079	240370521	8880100	75	157845											
WDR64	128025	broad.mit.edu	37	chr1	241907844	241907844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaacatccagaatgtggcGtccctgctttagtgtcctga	9	11	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241907844	T	T	241907844	1	4	198	0	1	0	0	0	0	0	0	0	17442	1160	40	3		3	WDR64	1	241907844	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1537323	241907844	7342777	76	157846											
WDR64	128025	broad.mit.edu	37	chr1	241907869	241907869	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctttagtgtcctgagaatTtccgccaaaaactctttcgt	7	10	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241907869	A	A	241907869	1	1	198	0	1	0	0	0	0	0	0	0	17442	1856	64	5		5	WDR64	1	241907869	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	25	241907869	7342752	77	157847											
AHCTF1	25909	broad.mit.edu	37	chr1	247014498	247014498	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatgcaaaatcacctggctCaacttctccttcttcacctt	4	14	5	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247014498	A	A	247014498	4	1	198	1	0	0	0	0	0	1	0	0	408	835	29	3	2006	3	AHCTF1	1	247014498	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	5106629	247014498	2236123	78	157848											
OR6F1	343169	broad.mit.edu	37	chr1	247875220	247875220	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttaaaactggagtcaccaCagtgttcaggacgtggacag	12	8	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247875220	G	G	247875220	3	3	198	1	0	0	0	0	1	0	0	0	11295	478	17	4	92	4	OR6F1	1	247875220	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	860722	247875220	1375401	79	157849											
OR2G6	391211	broad.mit.edu	37	chr1	248685105	248685105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actagtatgttgtctggactCcagactccacactccaatgt	7	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248685105	A	A	248685105	3	1	198	1	0	0	0	0	1	0	0	0	11094	855	30	3	160	3	OR2G6	1	248685105	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	809885	248685105	565516	80	157850											
OR2G6	391211	broad.mit.edu	37	chr1	248685450	248685450	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcactgtgcagctgccccTctgtggtcatcgcacactgg	10	16	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248685450	G	G	248685450	3	3	198	1	0	0	0	0	1	0	0	0	11094	1551	54	5	505	5	OR2G6	1	248685450	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	345	248685450	565171	81	157851											
ALLC	55821	broad.mit.edu	37	chr2	3749102	3749102	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgttttgctccaacagGcaatgctcctgacagctgta	10	11	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3749102	A	A	3749102	3	1	198	1	0	0	0	0	1	0	0	0	534	1217	42	4	889	4	ALLC	2	3749102	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08		3749102	239450271	82	157852											
MSGN1	343930	broad.mit.edu	37	chr2	17997987	17997987	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagctgtggctgggctgCcctgtgagcacggcggggcc	18	13	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17997987	T	T	17997987	3	4	198	1	0	0	0	0	1	0	0	0	9963	739	26	4	204	4	MSGN1	2	17997987	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	14248885	17997987	225201386	83	157853											
CAD	790	broad.mit.edu	37	chr2	27463731	27463731	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgggaatatggggtttctttCcaaacctcagccataaatgt	9	8	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27463731	G	G	27463731	1	3	198	0	1	0	0	0	0	0	0	0	2591	870	30	4		4	CAD	2	27463731	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	9465744	27463731	215735642	84	157854											
LTBP1	4052	broad.mit.edu	37	chr2	33411922	33411922	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttctcttttcccttttaGtaatttgccatcttccatgt	4	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33411922	A	A	33411922	5	1	198	1	0	0	0	0	0	0	1	0	9160	1043	36	4	1278	4	LTBP1	2	33411922	Splice_Site	SNP	G	TCGA-67-4679-01B-01D-1753-08	5948191	33411922	209787451	85	157855											
LTBP1	4052	broad.mit.edu	37	chr2	33484615	33484615	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatataatagactgaattgtCttaaatggtactaataccct	5	6	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33484615	T	T	33484615	1	4	198	0	1	0	0	0	0	0	0	0	9160	928	32	4		4	LTBP1	2	33484615	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	72693	33484615	209714758	86	157856											
PLEKHH2	130271	broad.mit.edu	37	chr2	43953681	43953681	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatcaatttaatggaaatAaggaagaaaattttgctata	6	3	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43953681	T	T	43953681	1	4	198	0	1	0	0	0	0	0	0	0	12172	377	13	5		5	PLEKHH2	2	43953681	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	10469066	43953681	199245692	87	157857											
ABCG5	64240	broad.mit.edu	37	chr2	44051610	44051610	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgtcacccatgtgttttTaaatgcatgtatgtacatgg	9	6	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44051610	G	G	44051610	1	3	198	0	1	0	0	0	0	0	0	0	71	1769	61	5		5	ABCG5	2	44051610	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	97929	44051610	199147763	88	157858											
ABCG5	64240	broad.mit.edu	37	chr2	44065004	44065004	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgcacatgatctgcccGctctccacgtacaaggagac	10	13	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44065004	T	T	44065004	3	4	198	1	0	0	0	0	1	0	0	0	71	1078	38	3	1769	3	ABCG5	2	44065004	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	13394	44065004	199134369	89	157859											
PRKCE	5581	broad.mit.edu	37	chr2	46378443	46378443	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacacacacacacacacacac	0	21	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46378443	T	T	46378443	1	4	198	0	1	0	0	0	0	0	0	0	12617	493	17	4		4	PRKCE	2	46378443	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2313439	46378443	196820930	90	157860											
ANTXR1	84168	broad.mit.edu	37	chr2	69300168	69300168	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacagggtacaggacagccAgcgtcatcattgctttgact	10	10	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69300168	T	T	69300168	3	4	198	1	0	0	0	0	1	0	0	0	711	188	7	5	449	5	ANTXR1	2	69300168	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	22921725	69300168	173899205	91	157861											
CLEC4F	165530	broad.mit.edu	37	chr2	71043103	71043103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagactgtgccctccccaaaCgcgactcccctctcccactt	6	20	1	1	rs143111244	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71043103	A	A	71043103	1	1	198	0	1	0	0	0	0	0	0	0	3548	551	19	3		3	CLEC4F	2	71043103	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1742935	71043103	172156270	92	157862											
CYP26B1	56603	broad.mit.edu	37	chr2	72361997	72361997	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcactgcagcttctcccGgatggccttctccagcccct	9	17	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72361997	T	T	72361997	2	4	198	1	0	0	0	0	0	0	0	1	4189	1115	39	1		1	CYP26B1	2	72361997	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	1318894	72361997	170837376	93	157863											
REG1B	5968	broad.mit.edu	37	chr2	79314024	79314024	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttctgggcagctgattcGgggattaggcagctctgtct	14	10	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79314024	T	T	79314024	2	4	198	1	0	0	0	0	0	0	0	1	13319	1124	39	1		1	REG1B	2	79314024	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	6952027	79314024	163885349	94	157864											
THNSL2	55258	broad.mit.edu	37	chr2	88472892	88472892	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccaaaagatgaattaaatGgtgagtgctcccacctgtac	8	9	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88472892	C	C	88472892	3	2	198	1	0	0	0	0	1	0	0	0	15986	1362	47	4	225	4	THNSL2	2	88472892	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	9158868	88472892	154726481	95	157865											
MERTK	10461	broad.mit.edu	37	chr2	112687087	112687087	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacacagttttatccagatgAtgaagttacagcaataatcg	7	7	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112687087	T	T	112687087	3	4	198	1	0	0	0	0	1	0	0	0	9572	333	12	5	458	5	MERTK	2	112687087	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	24214195	112687087	130512286	96	157866											
INHBB	3625	broad.mit.edu	37	chr2	121107309	121107309	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaccagtaccgcatgcgGggtctgaaccccggcacggt	14	13	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121107309	T	T	121107309	2	4	198	1	0	0	0	0	0	0	0	1	7812	1219	43	2		2	INHBB	2	121107309	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	8420222	121107309	122092064	97	157867											
CNTNAP5	129684	broad.mit.edu	37	chr2	125367414	125367414	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgaggtgtacaggcaccAggggaatacagccggcttct	14	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125367414	T	T	125367414	3	4	198	1	0	0	0	0	1	0	0	0	3682	188	7	5	1836	5	CNTNAP5	2	125367414	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	4260105	125367414	117831959	98	157868											
ARHGEF4	50649	broad.mit.edu	37	chr2	131785625	131785626	+	Missense_Mutation	DNP	GG	TT	TT													gccaccactacagccaccctGgagggggtggggagcagctg							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	131785626	TT	TT	131785625	3	4	198	1	0	0	0	0	1	0	0	0	910	1349	47	2	545	2	ARHGEF4	2	131785625	Missense_Mutation	DNP	GG	TCGA-67-4679-01B-01D-1753-08	6418211	131785625	111413748	99	157869											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135809821	135809821	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggggcggggacgcgcccCgttctctttcgctcttcttc	13	16	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135809821	A	A	135809821	1	1	198	0	1	0	0	0	0	0	0	0	13043	667	23	1		1	RAB3GAP1	2	135809821	5'Flank	SNP	C	TCGA-67-4679-01B-01D-1753-08	4024196	135809821	107389552	100	157870											
MCM6	4175	broad.mit.edu	37	chr2	136602111	136602111	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcacgcgcacttctgcacCtacatagtgtgtgagtcgat	11	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136602111	G	G	136602111	1	3	198	0	1	0	0	0	0	0	0	0	9484	696	24	4		4	MCM6	2	136602111	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	792290	136602111	106597262	101	157871											
LRP1B	53353	broad.mit.edu	37	chr2	141093302	141093302	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtacctcagactggtccagtGagtagtgtagtaactgaacc	11	9	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141093302	T	T	141093302	3	4	198	1	0	0	0	0	1	0	0	0	9042	1290	45	3	1857	3	LRP1B	2	141093302	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4491191	141093302	102106071	102	157872											
ZEB2	9839	broad.mit.edu	37	chr2	145274906	145274906	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgggggccatccgccatgatCggctgcttcattgataagag	13	11	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145274906	A	A	145274906	2	1	198	1	0	0	0	0	0	0	0	1	17750	871	31	3		3	ZEB2	2	145274906	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	4181604	145274906	97924467	103	157873											
NEB	4703	broad.mit.edu	37	chr2	152432946	152432946	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaataaggacagtttttaTgttgtgtgtgtatatattat	8	1	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152432946	C	C	152432946	1	2	198	0	1	0	0	0	0	0	0	0	10397	1479	51	5		5	NEB	2	152432946	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	7158040	152432946	90766427	104	157874											
XIRP2	129446	broad.mit.edu	37	chr2	168103076	168103076	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatttattgtcttccacatCaaacaataaaatatctgaaa	2	7	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168103076	A	A	168103076	4	1	198	1	0	0	0	0	0	1	0	0	17557	838	29	3	5204	3	XIRP2	2	168103076	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	15670130	168103076	75096297	105	157875											
XIRP2	129446	broad.mit.edu	37	chr2	168104598	168104598	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtctctgaaaaaagtcaCaatacatttaaggcaaccaa	5	8	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168104598	T	T	168104598	2	4	198	1	0	0	0	0	0	0	0	1	17557	477	17	4		4	XIRP2	2	168104598	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	1522	168104598	75094775	106	157876											
STK39	27347	broad.mit.edu	37	chr2	168994769	168994769	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaagacagaatctcagtaTagcaattgctacaatctagt	7	7	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168994769	C	C	168994769	1	2	198	0	1	0	0	0	0	0	0	0	15423	1421	49	5		5	STK39	2	168994769	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	890171	168994769	74204604	107	157877											
LRP2	4036	broad.mit.edu	37	chr2	170031733	170031733	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acggtcttcatcagacccatCagggcaattttggtgagcat	10	10	4	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170031733	G	G	170031733	3	3	198	1	0	0	0	0	1	0	0	0	9043	826	29	4	3329	4	LRP2	2	170031733	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1036964	170031733	73167640	108	157878											
TTN	7273	broad.mit.edu	37	chr2	179592221	179592221	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactatgttagaaagaatacTactttcttgattgtttagag	7	4	1	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179592221	C	C	179592221	1	2	198	0	1	0	0	0	0	0	0	0	16861	1537	53	5		5	TTN	2	179592221	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	9560488	179592221	63607152	109	157879											
TTN	7273	broad.mit.edu	37	chr2	179653993	179653993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacataagaaattcagagacTtgatattaatgtattacaat	5	4	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179653993	A	A	179653993	1	1	198	0	1	0	0	0	0	0	0	0	16861	1624	56	5		5	TTN	2	179653993	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	61772	179653993	63545380	110	157880											
CCDC141	285025	broad.mit.edu	37	chr2	179702359	179702359	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagagcatgtcttcaggcAggagcaggtcctggacgcca	14	11	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179702359	T	T	179702359	3	4	198	1	0	0	0	0	1	0	0	0	2801	188	7	5	769	5	CCDC141	2	179702359	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	48366	179702359	63497014	111	157881											
CCDC141	285025	broad.mit.edu	37	chr2	179732906	179732906	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctctacaaactccagCtctcttgatttgatgagacg	9	11	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179732906	G	G	179732906	3	3	198	1	0	0	0	0	1	0	0	0	2801	796	28	4	1963	4	CCDC141	2	179732906	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	30547	179732906	63466467	112	157882											
CALCRL	10203	broad.mit.edu	37	chr2	188211044	188211044	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacactgtgtaagacgcaCtacgaagagcttctgagttg	11	8	1	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188211044	A	A	188211044	3	1	198	1	0	0	0	0	1	0	0	0	2606	565	20	3	136	3	CALCRL	2	188211044	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	8478138	188211044	54988329	113	157883											
MYO1B	4430	broad.mit.edu	37	chr2	192279183	192279183	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaataatgccttaaactcAtggaccatttttgagtattt	6	7	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192279183	T	T	192279183	1	4	198	0	1	0	0	0	0	0	0	0	10163	232	8	5		5	MYO1B	2	192279183	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	4068139	192279183	50920190	114	157884											
DNAH7	56171	broad.mit.edu	37	chr2	196602802	196602802	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttatacaatggagcaacaTaacttggccgttttggtata	8	7	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196602802	C	C	196602802	3	2	198	1	0	0	0	0	1	0	0	0	4646	1406	49	5	160	5	DNAH7	2	196602802	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	4323619	196602802	46596571	115	157885											
HECW2	57520	broad.mit.edu	37	chr2	197183409	197183409	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccctccgctgccagacCtcccccagctcctcctggtc	6	24	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197183409	A	A	197183409	3	1	198	1	0	0	0	0	1	0	0	0	7110	680	24	2	2597	2	HECW2	2	197183409	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	580607	197183409	46015964	116	157886											
ZDBF2	57683	broad.mit.edu	37	chr2	207175047	207175047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctaagcaaaaggggcGtgtggcttctcaatgccaga	12	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207175047	T	T	207175047	3	4	198	1	0	0	0	0	1	0	0	0	17725	1145	40	3	5805	3	ZDBF2	2	207175047	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	9991638	207175047	36024326	117	157887											
ERBB4	2066	broad.mit.edu	37	chr2	212285330	212285330	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgggaagcttcatacgatCatcaccctaaaagaaagatt	7	9	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212285330	T	T	212285330	3	4	198	1	0	0	0	0	1	0	0	0	5251	826	29	4	971	4	ERBB4	2	212285330	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	5110283	212285330	30914043	118	157888											
BARD1	580	broad.mit.edu	37	chr2	215610628	215610628	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacattagacgactagaCaaagacattaaacagactgt	6	7	0	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215610628	A	A	215610628	1	1	198	0	1	0	0	0	0	0	0	0	1317	493	17	3		3	BARD1	2	215610628	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3325298	215610628	27588745	119	157889											
CCDC108	255101	broad.mit.edu	37	chr2	219896377	219896377	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacagctggtccatgtactCcttctgcagtgtgaggcggg	13	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219896377	A	A	219896377	4	1	198	1	0	0	0	0	0	1	0	0	2769	864	30	3	5244	3	CCDC108	2	219896377	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4285749	219896377	23302996	120	157890											
SLC4A3	6508	broad.mit.edu	37	chr2	220503422	220503422	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccctgttttcctgccatgCagaagctgacagtgcctaca	8	13	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220503422	T	T	220503422	1	4	198	0	1	0	0	0	0	0	0	0	14769	725	25	4		4	SLC4A3	2	220503422	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	607045	220503422	22695951	121	157891											
DOCK10	55619	broad.mit.edu	37	chr2	225729529	225729529	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcttatatgatctattggTaagaataatggtacaagcat	7	5	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225729529	A	A	225729529	1	1	198	0	1	0	0	0	0	0	0	0	4725	1653	57	5		5	DOCK10	2	225729529	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	5226107	225729529	17469844	122	157892											
SPHKAP	80309	broad.mit.edu	37	chr2	228856186	228856186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagagtagagtaatgctgGgaaaacaccaatgtggctat	12	5	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228856186	T	T	228856186	1	4	198	0	1	0	0	0	0	0	0	0	15166	1247	43	2		2	SPHKAP	2	228856186	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	3126657	228856186	14343187	123	157893											
SAG	6295	broad.mit.edu	37	chr2	234217807	234217807	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctgaccaacaccccaaGgtggtagaagttgccaggga	11	12	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234217807	T	T	234217807	5	4	198	1	0	0	0	0	0	0	1	0	13919	1014	35	2		2	SAG	2	234217807	Splice_Site	SNP	G	TCGA-67-4679-01B-01D-1753-08	5361621	234217807	8981566	124	157894											
CXCR7	57007	broad.mit.edu	37	chr2	237489664	237489664	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctactacctgaagaccGtcacgtctgcgtccaacaat	6	15	2	2	rs143561143	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237489664	T	T	237489664	3	4	198	1	0	0	0	0	1	0	0	0	4129	1145	40	3	558	3	CXCR7	2	237489664	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3271857	237489664	5709709	125	157895											
COL6A3	1293	broad.mit.edu	37	chr2	238285673	238285673	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggaactgaagcactccatCctcgatccggctgccagcag	10	15	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238285673	A	A	238285673	3	1	198	1	0	0	0	0	1	0	0	0	3733	855	30	3	6920	3	COL6A3	2	238285673	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	796009	238285673	4913700	126	157896											
CNTN4	152330	broad.mit.edu	37	chr3	2404388	2404388	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtaaatgacctgcacattcActtacttgggagctgacagc	9	11	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2404388	T	T	2404388	1	4	198	0	1	0	0	0	0	0	0	0	3675	174	6	5		5	CNTN4	3	2404388	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08		2404388	195618042	127	157897											
RAD18	56852	broad.mit.edu	37	chr3	8977689	8977689	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttctttaaatcacgatcaGagagcaaattatatacagtt	5	6	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8977689	C	C	8977689	3	2	198	1	0	0	0	0	1	0	0	0	13088	942	33	4	760	4	RAD18	3	8977689	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	6573301	8977689	189044741	128	157898											
FANCD2	2177	broad.mit.edu	37	chr3	10076083	10076083	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattggtttcatcaggcaagAaacttgggtttttagagaag	11	4	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10076083	T	T	10076083	1	4	198	0	1	0	0	0	0	0	0	0	5722	261	9	5		5	FANCD2	3	10076083	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	1098394	10076083	187946347	129	157899											
C3orf31	132001	broad.mit.edu	37	chr3	11858847	11858847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agataaacacatcttccattAagaatccacactctcgacct	3	13	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11858847	T	T	11858847	1	4	198	0	1	0	0	0	0	0	0	0	2243	377	13	5		5	C3orf31	3	11858847	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	1782764	11858847	186163583	130	157900											
TMEM40	55287	broad.mit.edu	37	chr3	12779560	12779560	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactaacccaccctctcaGgctgtctgaggacccaaccc	9	17	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12779560	T	T	12779560	1	4	198	0	1	0	0	0	0	0	0	0	16286	1015	35	2		2	TMEM40	3	12779560	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	920713	12779560	185242870	131	157901											
DAZL	1618	broad.mit.edu	37	chr3	16635317	16635317	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaattaaacagatatacaGatatatttaaaagccactta	4	5	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16635317	A	A	16635317	1	1	198	0	1	0	0	0	0	0	0	0	4279	957	33	4		4	DAZL	3	16635317	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	3855757	16635317	181387113	132	157902											
GPD1L	23171	broad.mit.edu	37	chr3	32207498	32207498	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaacatgatgtttgactGtaatctcatcacggatatgt	9	7	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32207498	T	T	32207498	1	4	198	0	1	0	0	0	0	0	0	0	6670	1392	48	3		3	GPD1L	3	32207498	3'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	15572181	32207498	165814932	133	157903											
DLEC1	9940	broad.mit.edu	37	chr3	38134220	38134220	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtccgagaggaggagggtggGaggcggggagggtggaagcc	25	5	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38134220	A	A	38134220	1	1	198	0	1	0	0	0	0	0	0	0	4592	1189	41	4		4	DLEC1	3	38134220	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	5926722	38134220	159888210	134	157904											
SCN5A	6331	broad.mit.edu	37	chr3	38622838	38622838	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcactgaaggagctgagcaGcaaggccaggaagagattca	14	8	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38622838	A	A	38622838	2	1	198	1	0	0	0	0	0	0	0	1	14035	962	34	4		4	SCN5A	3	38622838	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	488618	38622838	159399592	135	157905											
SCN11A	11280	broad.mit.edu	37	chr3	38891959	38891959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaaagtccctctgactgcTgattttacttactaacaatg	5	10	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38891959	C	C	38891959	1	2	198	0	1	0	0	0	0	0	0	0	14026	1595	55	5		5	SCN11A	3	38891959	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	269121	38891959	159130471	136	157906											
CTNNB1	1499	broad.mit.edu	37	chr3	41266967	41266967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtagaaacagctcgttGtaccgctgggaccttgcata	11	9	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41266967	T	T	41266967	3	4	198	1	0	0	0	0	1	0	0	0	4050	1377	48	3	652	3	CTNNB1	3	41266967	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2375008	41266967	156755463	137	157907											
VIPR1	7433	broad.mit.edu	37	chr3	42569456	42569456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatccaaggcccctttggCctcccagatctgcccacccc	9	19	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42569456	A	A	42569456	1	1	198	0	1	0	0	0	0	0	0	0	17296	754	26	3		3	VIPR1	3	42569456	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1302489	42569456	155452974	138	157908											
CCDC13	152206	broad.mit.edu	37	chr3	42798490	42798490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatctgctctctggaacCtgctgtctgccctatctgaa	10	12	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42798490	A	A	42798490	1	1	198	0	1	0	0	0	0	0	0	0	2791	696	24	2		2	CCDC13	3	42798490	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	229034	42798490	155223940	139	157909											
TGM4	7047	broad.mit.edu	37	chr3	44931948	44931948	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaggggcgctcctggcTgtccagggtcctgaccattc	13	14	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44931948	A	A	44931948	1	1	198	0	1	0	0	0	0	0	0	0	15955	1595	55	5		5	TGM4	3	44931948	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	2133458	44931948	153090482	140	157910											
LRRC2	79442	broad.mit.edu	37	chr3	46586690	46586691	+	Frame_Shift_Ins	INS	-	G	G													attcttgcagtatacagcctINSgggggatgcccttcctcctg							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46586691	G	G	46586690	7	5	198	1	0	1	1	0	0	0	0	0	9063	1580	55	0	964	0	LRRC2	3	46586690	Frame_Shift_Ins	INS	-	TCGA-67-4679-01B-01D-1753-08	1654742	46586690	151435740	141	157911											
TMIE	259236	broad.mit.edu	37	chr3	46747539	46747539	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcggtggtttctggcacCtcctgatccacacaaactcc	8	17	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46747539	T	T	46747539	1	4	198	0	1	0	0	0	0	0	0	0	16352	696	24	4		4	TMIE	3	46747539	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	160849	46747539	151274891	142	157912											
PTH1R	5745	broad.mit.edu	37	chr3	46940781	46940781	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctctgactaacaccagCtggtctcttaggcgggctgc	11	14	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46940781	A	A	46940781	1	1	198	0	1	0	0	0	0	0	0	0	12864	812	28	3		3	PTH1R	3	46940781	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	193242	46940781	151081649	143	157913											
NBEAL2	23218	broad.mit.edu	37	chr3	47032756	47032756	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcccatactgctgttacgtCtcatccacctcttctgcgcc	5	18	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47032756	T	T	47032756	3	4	198	1	0	0	0	0	1	0	0	0	10283	913	32	4	630	4	NBEAL2	3	47032756	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	91975	47032756	150989674	144	157914											
COL7A1	1294	broad.mit.edu	37	chr3	48631728	48631728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggcctggggtttccagGgtctcctccctctctgggga	13	14	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48631728	T	T	48631728	1	4	198	0	1	0	0	0	0	0	0	0	3736	1247	43	2		2	COL7A1	3	48631728	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1598972	48631728	149390702	145	157915											
RBM5	10181	broad.mit.edu	37	chr3	50131118	50131118	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttcaaagagtacagggTgatgttaattgtgattttgt	11	3	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50131118	G	G	50131118	1	3	198	0	1	0	0	0	0	0	0	0	13251	1711	59	5		5	RBM5	3	50131118	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	1499390	50131118	147891312	146	157916											
STAB1	23166	broad.mit.edu	37	chr3	52556665	52556665	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcgaagcacagggagcCgtccttgcttcattccctca	10	14	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52556665	T	T	52556665	2	4	198	1	0	0	0	0	0	0	0	1	15355	639	23	4		4	STAB1	3	52556665	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	2425547	52556665	145465765	147	157917											
CACNA2D3	55799	broad.mit.edu	37	chr3	54537612	54537612	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcttagccccaaatgacCattttaataatttgcctgtg	5	10	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54537612	G	G	54537612	3	3	198	1	0	0	0	0	1	0	0	0	2576	594	21	4	493	4	CACNA2D3	3	54537612	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1980947	54537612	143484818	148	157918											
PXK	54899	broad.mit.edu	37	chr3	58381436	58381436	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgcaaccctaagaagattCagggcctggaactccagcaa	9	12	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58381436	T	T	58381436	4	4	198	1	0	0	0	0	0	1	0	0	12957	827	29	4	806	4	PXK	3	58381436	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	3843824	58381436	139640994	149	157919											
TMF1	7110	broad.mit.edu	37	chr3	69078952	69078952	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actaccaaaaatatcactcaGaaaccatgctcacctattgt	3	12	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69078952	A	A	69078952	1	1	198	0	1	0	0	0	0	0	0	0	16351	957	33	4		4	TMF1	3	69078952	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	10697516	69078952	128943478	150	157920											
ROBO2	6092	broad.mit.edu	37	chr3	77600006	77600006	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaccccagcagcccaacaGtagatgctcagtgtcaccaa	7	16	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77600006	T	T	77600006	3	4	198	1	0	0	0	0	1	0	0	0	13625	1029	36	3	1129	3	ROBO2	3	77600006	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	8521054	77600006	120422424	151	157921											
MYH15	22989	broad.mit.edu	37	chr3	108183760	108183760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaacctaatcagttgaCaaagggaagaatattcactg	9	8	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108183760	A	A	108183760	1	1	198	0	1	0	0	0	0	0	0	0	10128	493	17	3		3	MYH15	3	108183760	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	30583754	108183760	89838670	152	157922											
MORC1	27136	broad.mit.edu	37	chr3	108833179	108833179	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcccatgtaattagacaaGagttatgtcatgaaattccc	6	9	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108833179	A	A	108833179	1	1	198	0	1	0	0	0	0	0	0	0	9795	957	33	4		4	MORC1	3	108833179	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	649419	108833179	89189251	153	157923											
KIAA1407	57577	broad.mit.edu	37	chr3	113729527	113729527	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctaatcttctgatagcCtagacaaagcaatctgacaa	6	10	4	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113729527	A	A	113729527	1	1	198	0	1	0	0	0	0	0	0	0	8299	696	24	2		2	KIAA1407	3	113729527	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	4896348	113729527	84292903	154	157924											
ZBTB20	26137	broad.mit.edu	37	chr3	114070511	114070511	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accgacgggatctcgatgtcGctgtagccaagcagcagttt	12	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114070511	A	A	114070511	2	1	198	1	0	0	0	0	0	0	0	1	17655	1078	38	4		4	ZBTB20	3	114070511	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	340984	114070511	83951919	155	157925											
PDIA5	10954	broad.mit.edu	37	chr3	122864366	122864366	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctcttgatctctccccaCagggtgtggccactgtaaga	9	12	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122864366	T	T	122864366	1	4	198	0	1	0	0	0	0	0	0	0	11765	493	17	4		4	PDIA5	3	122864366	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	8793855	122864366	75158064	156	157926											
ADCY5	111	broad.mit.edu	37	chr3	123071266	123071266	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccactgtgcaagggcagGggcctcactcacctgctgct	12	15	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123071266	T	T	123071266	1	4	198	0	1	0	0	0	0	0	0	0	297	1247	43	2		2	ADCY5	3	123071266	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	206900	123071266	74951164	157	157927											
MYLK	4638	broad.mit.edu	37	chr3	123337559	123337559	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaatggtcttagagaaataGggttttacatgaggcttttc	11	5	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123337559	T	T	123337559	2	4	198	1	0	0	0	0	0	0	0	1	10150	987	35	2		2	MYLK	3	123337559	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	266293	123337559	74684871	158	157928											
COL6A6	131873	broad.mit.edu	37	chr3	130380698	130380699	+	Frame_Shift_Ins	INS	-	C	C													tggccctattgagccatgctINSccccccgacttcctacccaa							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130380699	C	C	130380698	7	5	198	1	0	1	1	0	0	0	0	0	3735	1538	54	0	6182	0	COL6A6	3	130380698	Frame_Shift_Ins	INS	-	TCGA-67-4679-01B-01D-1753-08	7043139	130380698	67641732	159	157929											
NPHP3	27031	broad.mit.edu	37	chr3	132438549	132438549	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaaatgtaaggaatttacCttgaattgccttttaacttt	5	5	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132438549	G	G	132438549	3	3	198	1	0	0	0	0	1	0	0	0	10675	695	24	4	3577	4	NPHP3	3	132438549	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2057851	132438549	65583881	160	157930											
TF	7018	broad.mit.edu	37	chr3	133497484	133497484	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatctcagaggtagggctgCcaccaaggtgaagatgggaa	14	7	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133497484	A	A	133497484	1	1	198	0	1	0	0	0	0	0	0	0	15908	754	26	3		3	TF	3	133497484	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	1058935	133497484	64524946	161	157931											
RAB6B	51560	broad.mit.edu	37	chr3	133560365	133560365	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcccctagtgtcggcaggTgctctcagtggtgcccagct	13	14	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133560365	G	G	133560365	1	3	198	0	1	0	0	0	0	0	0	0	13060	1711	59	5		5	RAB6B	3	133560365	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	62881	133560365	64462065	162	157932											
TRPC1	7220	broad.mit.edu	37	chr3	142503761	142503761	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatttatcattcatggagcAtcatatttcacatttctgct	4	8	5	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142503761	T	T	142503761	2	4	198	1	0	0	0	0	0	0	0	1	16703	204	8	5		5	TRPC1	3	142503761	Silent	SNP	A	TCGA-67-4679-01B-01D-1753-08	8943396	142503761	55518669	163	157933											
AGTR1	185	broad.mit.edu	37	chr3	148459218	148459218	+	Frame_Shift_Del	DEL	C	-	-													cgatacctggctattgttcaCccaatgaagtcccgccttcg							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	148459218	-	-	148459218	7	5	198	1	0	1	0	1	0	0	0	0	401	506	18	0	398	0	AGTR1	3	148459218	Frame_Shift_Del	DEL	C	TCGA-67-4679-01B-01D-1753-08	5955457	148459218	49563212	164	157934											
CPB1	1360	broad.mit.edu	37	chr3	148545963	148545963	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgaaatattaactatagCattttggtagcaagaaataa	6	4	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148545963	A	A	148545963	1	1	198	0	1	0	0	0	0	0	0	0	3828	725	25	3		3	CPB1	3	148545963	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	86745	148545963	49476467	165	157935											
FAM194A	131831	broad.mit.edu	37	chr3	150398230	150398230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacgttgtacagctggtctAtaagatcagcactaatgaac	9	8	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150398230	G	G	150398230	1	3	198	0	1	0	0	0	0	0	0	0	5573	464	16	5		5	FAM194A	3	150398230	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	1852267	150398230	47624200	166	157936											
GPR149	344758	broad.mit.edu	37	chr3	154069950	154069950	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaactccatttgtggcccCcacttcttgatcgagttcta	6	13	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154069950	T	T	154069950	1	4	198	0	1	0	0	0	0	0	0	0	6719	638	22	4		4	GPR149	3	154069950	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3671720	154069950	43952480	167	157937											
SCHIP1	29970	broad.mit.edu	37	chr3	158980354	158980354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcattcagcgagcatggcGagagtacctgcagcggcagg	15	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158980354	T	T	158980354	3	4	198	1	0	0	0	0	1	0	0	0	14017	1058	37	3		3	SCHIP1	3	158980354	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4910404	158980354	39042076	168	157938											
SI	6476	broad.mit.edu	37	chr3	164750280	164750280	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatatgagattatatgatAgctaaaatattttaaaagat	5	1	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164750280	G	G	164750280	1	3	198	0	1	0	0	0	0	0	0	0	14410	435	15	5		5	SI	3	164750280	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	5769926	164750280	33272150	169	157939											
BCHE	590	broad.mit.edu	37	chr3	165548104	165548104	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaacaatgaatggcttcCaggagaaagcaaatgcaggc	13	7	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165548104	A	A	165548104	4	1	198	1	0	0	0	0	0	1	0	0	1363	603	21	2	1102	2	BCHE	3	165548104	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	797824	165548104	32474326	170	157940											
TNIK	23043	broad.mit.edu	37	chr3	170784270	170784270	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacagatttttttttttttTtttttgtggaatcaaatggt	6	3	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170784270	C	C	170784270	1	2	198	0	1	0	0	0	0	0	0	0	16436	1856	64	5		5	TNIK	3	170784270	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	5236166	170784270	27238160	171	157941											
TNIK	23043	broad.mit.edu	37	chr3	170857124	170857124	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccctgaggcttagaagatCccctcttctggactggtatg	11	11	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170857124	A	A	170857124	1	1	198	0	1	0	0	0	0	0	0	0	16436	870	30	3		3	TNIK	3	170857124	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	72854	170857124	27165306	172	157942											
C3orf59	151963	broad.mit.edu	37	chr3	192516570	192516570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgcaggtcatcgatgaGgcccagcaaaaagtgggctg	15	8	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192516570	A	A	192516570	3	1	198	1	0	0	0	0	1	0	0	0	2259	1000	35	4	398	4	C3orf59	3	192516570	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	21659446	192516570	5505860	173	157943											
CPN2	1370	broad.mit.edu	37	chr3	194061747	194061747	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgcccctacctgtcgcctGgtcaggccccagaggccccc	10	21	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194061747	A	A	194061747	1	1	198	0	1	0	0	0	0	0	0	0	3842	1363	47	4		4	CPN2	3	194061747	3'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	1545177	194061747	3960683	174	157944											
ZNF595	152687	broad.mit.edu	37	chr4	53257	53257	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttggtttagggcttcagCtctctgcgttctcggctccg	13	12	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53257	T	T	53257	1	4	198	0	1	0	0	0	0	0	0	0	18152	812	28	4		4	ZNF595	4	53257	5'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08		53257	191101019	175	157945											
PDE6B	5158	broad.mit.edu	37	chr4	647587	647587	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccctgctgctgtggtcagAccggcgtgagggtgggagtg	18	10	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	647587	G	G	647587	1	3	198	0	1	0	0	0	0	0	0	0	11740	290	10	5		5	PDE6B	4	647587	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	594330	647587	190506689	176	157946											
ZFYVE28	57732	broad.mit.edu	37	chr4	2273100	2273100	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagggtgctttgcacgccgTgcagaagccacaggcctcgt	14	12	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2273100	A	A	2273100	3	1	198	1	0	0	0	0	1	0	0	0	17796	1696	59	5	201	5	ZFYVE28	4	2273100	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	1625513	2273100	188881176	177	157947											
CPZ	8532	broad.mit.edu	37	chr4	8608492	8608492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaacgggtggacgagcgGgaggcagaacgcgcagaacc	16	11	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8608492	T	T	8608492	3	4	198	1	0	0	0	0	1	0	0	0	3871	1232	43	2	957	2	CPZ	4	8608492	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	6335392	8608492	182545784	178	157948											
GPR125	166647	broad.mit.edu	37	chr4	22389449	22389449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaatggccaagttgaggCcataagatttttgctgattt	10	6	1	4	rs149299752		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22389449	A	A	22389449	3	1	198	1	0	0	0	0	1	0	0	0	6704	739	26	3	124	3	GPR125	4	22389449	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	13780957	22389449	168764827	179	157949											
ANAPC4	29945	broad.mit.edu	37	chr4	25408818	25408818	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgtttatttttttccaGgctccagacctttataatcg	5	9	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25408818	T	T	25408818	5	4	198	1	0	0	0	0	0	0	1	0	604	1014	35	2	1448	2	ANAPC4	4	25408818	Splice_Site	SNP	G	TCGA-67-4679-01B-01D-1753-08	3019369	25408818	165745458	180	157950											
PDGFRA	5156	broad.mit.edu	37	chr4	54257289	54257289	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagttataccagtaacctctActacaaataaaattacggta	4	8	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54257289	T	T	54257289	3	4	198	1	0	0	0	0	1	0	0	0	11755	391	14	5		5	PDGFRA	4	54257289	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	28848471	54257289	136896987	181	157951											
SPINK2	6691	broad.mit.edu	37	chr4	57677865	57677865	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttacctgattttcatgcaCagagtacattcattggcata	7	8	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57677865	T	T	57677865	2	4	198	1	0	0	0	0	0	0	0	1	15178	465	17	4		4	SPINK2	4	57677865	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	3420576	57677865	133476411	182	157952											
EPHA5	2044	broad.mit.edu	37	chr4	66190033	66190033	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaacatagtgcagacactAgttagattacagtcctaatt	7	8	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66190033	G	G	66190033	1	3	198	0	1	0	0	0	0	0	0	0	5212	435	15	5		5	EPHA5	4	66190033	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	8512168	66190033	124964243	183	157953											
DCK	1633	broad.mit.edu	37	chr4	71889280	71889280	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagactctcttttaggtatAtttttgcatctaatttgtat	6	5	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71889280	G	G	71889280	3	3	198	1	0	0	0	0	1	0	0	0	4323	449	16	5	420	5	DCK	4	71889280	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	5699247	71889280	119264996	184	157954											
ALPK1	80216	broad.mit.edu	37	chr4	113351658	113351658	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcaaatgactgtcctccaGaattgaaaaacttacatctg	6	9	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113351658	T	T	113351658	4	4	198	1	0	0	0	0	0	1	0	0	544	943	33	3	989	3	ALPK1	4	113351658	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	41462378	113351658	77802618	185	157955											
ANK2	287	broad.mit.edu	37	chr4	114278501	114278501	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattttccatggatgttccCgtgtctgacctagctgagaa	10	9	1	3	rs144821187	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114278501	A	A	114278501	2	1	198	1	0	0	0	0	0	0	0	1	621	639	23	1		1	ANK2	4	114278501	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	926843	114278501	76875775	186	157956											
FGA	2243	broad.mit.edu	37	chr4	155507713	155507713	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccagcttccagcactgcTagggttcctggggctttccg	12	13	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155507713	G	G	155507713	3	3	198	1	0	0	0	0	1	0	0	0	5887	1522	53	5	1784	5	FGA	4	155507713	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	41229212	155507713	35646563	187	157957											
FSTL5	56884	broad.mit.edu	37	chr4	162402195	162402195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaactttttgggactgcaCatcaacaataaggactctgt	7	9	2	0	rs143585706		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162402195	A	A	162402195	3	1	198	1	0	0	0	0	1	0	0	0	6140	478	17	3	974	3	FSTL5	4	162402195	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	6894482	162402195	28752081	188	157958											
MARCH1	55016	broad.mit.edu	37	chr4	165110956	165110956	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctgacaaaagacattcatCttctgggtacatttgatctg	7	10	4	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165110956	G	G	165110956	1	3	198	0	1	0	0	0	0	0	0	0	9390	928	32	4		4	MARCH1	4	165110956	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2708761	165110956	26043320	189	157959											
PDLIM3	27295	broad.mit.edu	37	chr4	186423472	186423472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttgggatacagagtgacCgtgtcatagccctctggggg	15	9	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186423472	A	A	186423472	2	1	198	1	0	0	0	0	0	0	0	1	11775	639	23	1		1	PDLIM3	4	186423472	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	21312516	186423472	4730804	190	157960											
TUBB4Q	56604	broad.mit.edu	37	chr4	190905529	190905529	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtacctgccacctgcgtggGgcgggagggcatgagcgagg	19	11	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190905529	A	A	190905529	1	1	198	0	1	0	0	0	0	0	0	0	16885	1247	43	4		4	TUBB4Q	4	190905529	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	4482057	190905529	248747	191	157961											
ADAMTS16	170690	broad.mit.edu	37	chr5	5235320	5235320	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaatctcaaactgctttcGggtaatagcctcatgcttta	7	9	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5235320	T	T	5235320	1	4	198	0	1	0	0	0	0	0	0	0	261	1131	39	1		1	ADAMTS16	5	5235320	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08		5235320	175679940	192	157962											
ADAMTS16	170690	broad.mit.edu	37	chr5	5303785	5303785	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccgacgctgtctgcaCctccgagcccaagcccagga	11	18	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5303785	A	A	5303785	3	1	198	1	0	0	0	0	1	0	0	0	261	507	18	3	3170	3	ADAMTS16	5	5303785	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	68465	5303785	175611475	193	157963											
ADCY2	108	broad.mit.edu	37	chr5	7766996	7766996	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tataacatatatcctttagtCtcagatctgttctagacttt	4	8	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7766996	T	T	7766996	1	4	198	0	1	0	0	0	0	0	0	0	294	928	32	4		4	ADCY2	5	7766996	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2463211	7766996	173148264	194	157964											
CTNND2	1501	broad.mit.edu	37	chr5	11346695	11346695	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggccgtgctggctgcCtgtgcgctgcaaggggacgg	19	11	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11346695	A	A	11346695	3	1	198	1	0	0	0	0	1	0	0	0	4054	681	24	2	2316	2	CTNND2	5	11346695	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	3579699	11346695	169568565	195	157965											
CDH12	1010	broad.mit.edu	37	chr5	21975057	21975057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaaaacaaaaaagttaCaaaaataaatgaaaagaact	4	3	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21975057	A	A	21975057	1	1	198	0	1	0	0	0	0	0	0	0	3128	493	17	3		3	CDH12	5	21975057	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	10628362	21975057	158940203	196	157966											
GAPT	202309	broad.mit.edu	37	chr5	57790735	57790735	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctaatttcgaggagcatatCtatggaaatgagacatcttc	8	7	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57790735	A	A	57790735	2	1	198	1	0	0	0	0	0	0	0	1	6300	903	32	3		3	GAPT	5	57790735	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	35815678	57790735	123124525	197	157967											
MAST4	375449	broad.mit.edu	37	chr5	66462274	66462274	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggccagagggaaagggcccGgtccccagaagccaccgacg	15	14	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66462274	C	C	66462274	3	2	198	1	0	0	0	0	1	0	0	0	9419	1116	39	4	7511	4	MAST4	5	66462274	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	8671539	66462274	114452986	198	157968											
CMYA5	202333	broad.mit.edu	37	chr5	79033143	79033143	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatacagttcatactattcAgacatctaaagatgacacat	5	9	3	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79033143	C	C	79033143	3	2	198	1	0	0	0	0	1	0	0	0	3622	188	7	5	8561	5	CMYA5	5	79033143	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	12570869	79033143	101882117	199	157969											
VCAN	1462	broad.mit.edu	37	chr5	82833850	82833850	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttagacactagcaggatAatcacagaaagcttttttga	7	7	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82833850	T	T	82833850	2	4	198	1	0	0	0	0	0	0	0	1	17265	352	13	5		5	VCAN	5	82833850	Silent	SNP	A	TCGA-67-4679-01B-01D-1753-08	3800707	82833850	98081410	200	157970											
FAM172A	83989	broad.mit.edu	37	chr5	93120052	93120052	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagatataaaggctcacaCccattcatctcagcactaaa	4	12	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93120052	A	A	93120052	1	1	198	0	1	0	0	0	0	0	0	0	5537	522	18	3		3	FAM172A	5	93120052	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	10286202	93120052	87795208	201	157971											
SPATA9	83890	broad.mit.edu	37	chr5	94999696	94999696	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgaagcatatattatgctAgttaaagcagtctttgctgg	9	5	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94999696	T	T	94999696	2	4	198	1	0	0	0	0	0	0	0	1	15132	407	15	5		5	SPATA9	5	94999696	Silent	SNP	A	TCGA-67-4679-01B-01D-1753-08	1879644	94999696	85915564	202	157972											
RIOK2	55781	broad.mit.edu	37	chr5	96503657	96503657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcatttcctttgtgtagCcactggcagaaacctccaca	7	14	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96503657	A	A	96503657	3	1	198	1	0	0	0	0	1	0	0	0	13489	739	26	3	787	3	RIOK2	5	96503657	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1503961	96503657	84411603	203	157973											
PAM	5066	broad.mit.edu	37	chr5	102249585	102249585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtattttatgactttgGtgcacagaagtgtaacttgt	10	4	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102249585	T	T	102249585	1	4	198	0	1	0	0	0	0	0	0	0	11506	1276	44	3		3	PAM	5	102249585	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	5745928	102249585	78665675	204	157974											
NUDT12	83594	broad.mit.edu	37	chr5	102895772	102895772	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcagaaattggactatctCtgggtgcccattccttgccg	10	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102895772	A	A	102895772	4	1	198	1	0	0	0	0	0	1	0	0	10823	922	32	3	1234	3	NUDT12	5	102895772	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	646187	102895772	78019488	205	157975											
FER	2241	broad.mit.edu	37	chr5	108380486	108380486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgaaaataaaatttttaCaagaagccaagtgagttatt	6	3	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108380486	A	A	108380486	3	1	198	1	0	0	0	0	1	0	0	0	5870	479	17	3	1869	3	FER	5	108380486	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	5484714	108380486	72534774	206	157976											
TSSK1B	83942	broad.mit.edu	37	chr5	112769471	112769471	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctgttgggggggccCttcctctgtctccatagtcg	15	11	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112769471	T	T	112769471	3	4	198	1	0	0	0	0	1	0	0	0	16793	681	24	4	41	4	TSSK1B	5	112769471	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4388985	112769471	68145789	207	157977											
TRIM36	55521	broad.mit.edu	37	chr5	114513595	114513595	+	Intron	DEL	A	-	-													gaagagagagacagagagagAgagagcagagaaatccagta							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114513595	-	-	114513595	6	5	198	0	1	1	0	1	0	0	0	0	16634	319	11	0		0	TRIM36	5	114513595	Intron	DEL	A	TCGA-67-4679-01B-01D-1753-08	1744124	114513595	66401665	208	157978											
SLC12A2	6558	broad.mit.edu	37	chr5	127520534	127520534	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggaacattcaagcacagcTaatattattgtcatgtaagt	7	6	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127520534	C	C	127520534	2	2	198	1	0	0	0	0	0	0	0	1	14496	1509	53	5		5	SLC12A2	5	127520534	Silent	SNP	T	TCGA-67-4679-01B-01D-1753-08	13006939	127520534	53394726	209	157979											
ADAMTS19	171019	broad.mit.edu	37	chr5	129015676	129015676	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catggcaaggaatattcccaGtgcacttcctctaatatttt	6	10	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129015676	A	A	129015676	1	1	198	0	1	0	0	0	0	0	0	0	264	1044	36	4		4	ADAMTS19	5	129015676	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1495142	129015676	51899584	210	157980											
PSD2	84249	broad.mit.edu	37	chr5	139216787	139216787	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggctggaagaaattctaCgcagtgctcaaagggaccat	12	9	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139216787	T	T	139216787	2	4	198	1	0	0	0	0	0	0	0	1	12753	547	19	4		4	PSD2	5	139216787	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	10201111	139216787	41698473	211	157981											
PCDHGA3	56112	broad.mit.edu	37	chr5	140724542	140724542	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gattatgaggatgccatgttCtatgaaattaaaattgaagc	9	4	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140724542	G	G	140724542	3	3	198	1	0	0	0	0	1	0	0	0	11649	912	32	4	944	4	PCDHGA3	5	140724542	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1507755	140724542	40190718	212	157982											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773331	140773331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgttcattttatgaaatGgaaatacaagccgaagatgt	9	4	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140773331	T	T	140773331	3	4	198	1	0	0	0	0	1	0	0	0	11654	1348	47	2	953	2	PCDHGA8	5	140773331	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	48789	140773331	40141929	213	157983											
PCDHGA8	9708	broad.mit.edu	37	chr5	140773464	140773464	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagtgttagaaaattctcttCccgggacagtaattgccttc	8	10	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140773464	T	T	140773464	3	4	198	1	0	0	0	0	1	0	0	0	11654	855	30	4	1086	4	PCDHGA8	5	140773464	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	133	140773464	40141796	214	157984											
ABLIM3	22885	broad.mit.edu	37	chr5	148590238	148590238	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatctaaatgccatgtgcacCctcactgatcctccctaact	4	15	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148590238	G	G	148590238	1	3	198	0	1	0	0	0	0	0	0	0	96	638	22	4		4	ABLIM3	5	148590238	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	7816774	148590238	32325022	215	157985											
ABLIM3	22885	broad.mit.edu	37	chr5	148618713	148618713	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggaactgctgcaaaccctCtctgccgagccatctaacca	7	15	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148618713	T	T	148618713	1	4	198	0	1	0	0	0	0	0	0	0	96	928	32	4		4	ABLIM3	5	148618713	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	28475	148618713	32296547	216	157986											
ARSI	340075	broad.mit.edu	37	chr5	149677742	149677742	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtgcggtagcggtacaGgtactcacgaggggactgca	16	9	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149677742	T	T	149677742	3	4	198	1	0	0	0	0	1	0	0	0	998	991	35	2	968	2	ARSI	5	149677742	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1059029	149677742	31237518	217	157987											
SPARC	6678	broad.mit.edu	37	chr5	151043215	151043215	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtgtcgatgataacgcActtcccaaggagtcagtgga	13	9	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151043215	C	C	151043215	1	2	198	0	1	0	0	0	0	0	0	0	15111	174	6	5		5	SPARC	5	151043215	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	1365473	151043215	29872045	218	157988											
TIMD4	91937	broad.mit.edu	37	chr5	156353276	156353276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcacagattttttacctGtcctgtttttgttgttttgt	6	7	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156353276	T	T	156353276	3	4	198	1	0	0	0	0	1	0	0	0	16026	1386	48	3	260	3	TIMD4	5	156353276	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	5310061	156353276	24561984	219	157989											
ADAM19	8728	broad.mit.edu	37	chr5	156923992	156923992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccctcacagggggtaccatCcatctggtagaagttggtag	13	10	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156923992	A	A	156923992	3	1	198	1	0	0	0	0	1	0	0	0	240	855	30	3	1292	3	ADAM19	5	156923992	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	570716	156923992	23991268	220	157990											
SLIT3	6586	broad.mit.edu	37	chr5	168110897	168110897	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagttctcctgaatcccccTtctgagttgcaggcccagag	10	14	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168110897	C	C	168110897	1	2	198	0	1	0	0	0	0	0	0	0	14855	1624	56	5		5	SLIT3	5	168110897	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	11186905	168110897	12804363	221	157991											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171849422	171849422	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacctcaaatccttacctGgaggtcaaaaaacttgctgt	8	10	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171849422	A	A	171849422	4	1	198	1	0	0	0	0	0	1	0	0	14370	1357	47	4	2629	4	SH3PXD2B	5	171849422	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3738525	171849422	9065838	222	157992											
GFPT2	9945	broad.mit.edu	37	chr5	179729493	179729493	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacgctcaggatgccctggAggcagtccacagtgtggggc	15	12	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179729493	T	T	179729493	3	4	198	1	0	0	0	0	1	0	0	0	6410	304	11	5	122	5	GFPT2	5	179729493	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	7880071	179729493	1185767	223	157993											
BTNL9	153579	broad.mit.edu	37	chr5	180485398	180485398	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaactgaagccaggaaacTgatttgtgttttggtttggc	13	5	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	180485398	C	C	180485398	1	2	198	0	1	0	0	0	0	0	0	0	1578	1595	55	5		5	BTNL9	5	180485398	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	755905	180485398	429862	224	157994											
F13A1	2162	broad.mit.edu	37	chr6	6305670	6305670	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagaaagactgccctctgCggacaatcagcttgttgttt	9	10	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6305670	A	A	6305670	3	1	198	1	0	0	0	0	1	0	0	0	5383	768	27	3	2017	3	F13A1	6	6305670	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08		6305670	164809397	225	157995											
GFOD1	54438	broad.mit.edu	37	chr6	13364901	13364901	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacattccccatggtcaccCtctcccctcggcccttccct	4	23	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13364901	T	T	13364901	1	4	198	0	1	0	0	0	0	0	0	0	6407	696	24	4		4	GFOD1	6	13364901	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	7059231	13364901	157750166	226	157996											
JARID2	3720	broad.mit.edu	37	chr6	15468781	15468781	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattccaccaggttctcctGcgctgcccaacagcatggtg	9	14	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15468781	T	T	15468781	3	4	198	1	0	0	0	0	1	0	0	0	8015	1319	46	3	520	3	JARID2	6	15468781	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2103880	15468781	155646286	227	157997											
MRS2	57380	broad.mit.edu	37	chr6	24418847	24418847	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaacttgggggttttggCcgggcatggtggctcatgtc	15	8	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24418847	T	T	24418847	1	4	198	0	1	0	0	0	0	0	0	0	9945	754	26	4		4	MRS2	6	24418847	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	8950066	24418847	146696220	228	157998											
BTN3A3	10384	broad.mit.edu	37	chr6	26450523	26450523	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagtgggcccatctccaaGacccttcccgctgagagccc	9	16	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26450523	T	T	26450523	1	4	198	0	1	0	0	0	0	0	0	0	1574	957	33	3		3	BTN3A3	6	26450523	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	2031676	26450523	144664544	229	157999											
HIST1H2AH	85235	broad.mit.edu	37	chr6	27115000	27115000	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttccccgtgggccgagtGcaccgcctgctccgcaaggg	14	16	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27115000	A	A	27115000	2	1	198	1	0	0	0	0	0	0	0	1	7201	1306	46	4		4	HIST1H2AH	6	27115000	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	664477	27115000	144000067	230	158000											
TRIM10	10107	broad.mit.edu	37	chr6	30125110	30125110	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtacatgtatgtatatttaTatggaaaaagaaaagagaga	9	1	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30125110	C	C	30125110	1	2	198	0	1	0	0	0	0	0	0	0	16610	1421	49	5		5	TRIM10	6	30125110	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	3010110	30125110	140989957	231	158001											
DHX16	8449	broad.mit.edu	37	chr6	30633459	30633459	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtcctcaagcttctctcGctcccgcttagccaggtact	8	16	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30633459	A	A	30633459	4	1	198	1	0	0	0	0	0	1	0	0	4542	1095	38	4	2471	4	DHX16	6	30633459	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	508349	30633459	140481608	232	158002											
CFB	629	broad.mit.edu	37	chr6	31901713	31901713	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttctcccacatgcttgGggccaccaatcccacccaga	6	18	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31901713	T	T	31901713	3	4	198	1	0	0	0	0	1	0	0	0	3308	1232	43	2		2	CFB	6	31901713	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1268254	31901713	139213354	233	158003											
DEF6	50619	broad.mit.edu	37	chr6	35288960	35288960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgcctgccttctctctgCcagataagcgtccggtcacc	8	16	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35288960	A	A	35288960	1	1	198	0	1	0	0	0	0	0	0	0	4419	754	26	3		3	DEF6	6	35288960	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3387247	35288960	135826107	234	158004											
DNAH8	1769	broad.mit.edu	37	chr6	38775422	38775422	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttttttctctcatcaaTtactagacagtcttcaaaaa	3	9	5	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38775422	A	A	38775422	3	1	198	1	0	0	0	0	1	0	0	0	4647	1490	52	5	2614	5	DNAH8	6	38775422	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	3486462	38775422	132339645	235	158005											
KIF6	221458	broad.mit.edu	37	chr6	39513404	39513404	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttacgcatatccgcgccAacctctaatctactgtctga	5	14	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39513404	C	C	39513404	2	2	198	1	0	0	0	0	0	0	0	1	8378	117	5	5		5	KIF6	6	39513404	Silent	SNP	A	TCGA-67-4679-01B-01D-1753-08	737982	39513404	131601663	236	158006											
LRFN2	57497	broad.mit.edu	37	chr6	40400281	40400281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaggtctgcaaaggtgCcctcggcgatgtgatccagc	13	12	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40400281	A	A	40400281	3	1	198	1	0	0	0	0	1	0	0	0	9025	739	26	3	1805	3	LRFN2	6	40400281	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	886877	40400281	130714786	237	158007											
CUL9	23113	broad.mit.edu	37	chr6	43172512	43172512	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacagcaagggtcgggacCggagcccggcgccttcgcca	15	14	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43172512	T	T	43172512	3	4	198	1	0	0	0	0	1	0	0	0	4094	643	23	4	4448	4	CUL9	6	43172512	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2772231	43172512	127942555	238	158008											
MEP1A	4224	broad.mit.edu	37	chr6	46806704	46806704	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcccacactcccttcatgtCcttttccctcaggtgcatct	4	17	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46806704	T	T	46806704	1	4	198	0	1	0	0	0	0	0	0	0	9568	870	30	4		4	MEP1A	6	46806704	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3634192	46806704	124308363	239	158009											
GFRAL	389400	broad.mit.edu	37	chr6	55198657	55198657	+	Frame_Shift_Del	DEL	T	-	-													cagtacttagtggaaagcaaTttccaatttaaagagtgtct							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55198657	-	-	55198657	7	5	198	1	0	1	0	1	0	0	0	0	6415	1490	52	0	241	0	GFRAL	6	55198657	Frame_Shift_Del	DEL	T	TCGA-67-4679-01B-01D-1753-08	8391953	55198657	115916410	240	158010											
COL19A1	1310	broad.mit.edu	37	chr6	70745761	70745761	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatgtgcaaaaagggactAgtggtaattgtagcttttct	10	4	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70745761	T	T	70745761	1	4	198	0	1	0	0	0	0	0	0	0	3708	435	15	5		5	COL19A1	6	70745761	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	15547104	70745761	100369306	241	158011											
BCKDHB	594	broad.mit.edu	37	chr6	80912907	80912907	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgaggactataataccttGggatgtggacacaatttgta	10	6	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80912907	C	C	80912907	3	2	198	1	0	0	0	0	1	0	0	0	1365	1357	47	4	959	4	BCKDHB	6	80912907	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	10167146	80912907	90202160	242	158012											
LAMA4	3910	broad.mit.edu	37	chr6	112440582	112440582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaaaaggctgtgtttcCtcttcttccaactttgctat	7	10	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112440582	T	T	112440582	1	4	198	0	1	0	0	0	0	0	0	0	8680	696	24	4		4	LAMA4	6	112440582	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	31527675	112440582	58674485	243	158013											
PTPRK	5796	broad.mit.edu	37	chr6	128307001	128307001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaactgtttaacttcaCggatttcattgtaccccctc	6	11	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128307001	A	A	128307001	3	1	198	1	0	0	0	0	1	0	0	0	12913	536	19	3	1242	3	PTPRK	6	128307001	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	15866419	128307001	42808066	244	158014											
LAMA2	3908	broad.mit.edu	37	chr6	129748788	129748788	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaattctatatctgcagCccagagctctttcctaaagg	6	11	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129748788	A	A	129748788	1	1	198	0	1	0	0	0	0	0	0	0	8678	754	26	3		3	LAMA2	6	129748788	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1441787	129748788	41366279	245	158015											
ENPP1	5167	broad.mit.edu	37	chr6	132199649	132199649	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatttaaaacatgtctctcAgtccttaaaaatagttttat	3	6	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132199649	T	T	132199649	1	4	198	0	1	0	0	0	0	0	0	0	5171	203	7	5		5	ENPP1	6	132199649	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	2450861	132199649	38915418	246	158016											
UTRN	7402	broad.mit.edu	37	chr6	144782618	144782618	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaaatgtgtttatgatttGagggttagtttgacctcaca	9	5	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144782618	T	T	144782618	1	4	198	0	1	0	0	0	0	0	0	0	17230	1305	45	3		3	UTRN	6	144782618	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	12582969	144782618	26332449	247	158017											
SYNE1	23345	broad.mit.edu	37	chr6	152640091	152640091	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagctaacttctgaatttgCcggctgagttcctggctcgt	10	10	1	2	rs144376043	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152640091	T	T	152640091	2	4	198	1	0	0	0	0	0	0	0	1	15564	726	26	4		4	SYNE1	6	152640091	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	7857473	152640091	18474976	248	158018											
IGF2R	3482	broad.mit.edu	37	chr6	160482464	160482464	+	Intron	DEL	G	-	-													gcctcctcagggcttatttaGggtgaaaggcagttcttgag							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160482464	-	-	160482464	6	5	198	0	1	1	0	1	0	0	0	0	7646	1015	35	0		0	IGF2R	6	160482464	Intron	DEL	G	TCGA-67-4679-01B-01D-1753-08	7842373	160482464	10632603	249	158019											
MAP3K4	4216	broad.mit.edu	37	chr6	161519411	161519411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcggcccagcccctctgGtggtgactctgtgctgccca	12	16	2	1	rs144235437		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161519411	T	T	161519411	3	4	198	1	0	0	0	0	1	0	0	0	9344	1261	44	3	3692	3	MAP3K4	6	161519411	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1036947	161519411	9595656	250	158020											
PDE10A	10846	broad.mit.edu	37	chr6	165863760	165863760	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgctcagttcatagaGgagtagctggttgtctcctc	12	9	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165863760	T	T	165863760	3	4	198	1	0	0	0	0	1	0	0	0	11724	1000	35	2	2129	2	PDE10A	6	165863760	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4344349	165863760	5251307	251	158021											
CCR6	1235	broad.mit.edu	37	chr6	167417200	167417200	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcttacttacctttttcttGatctttataggtcgtttagt	6	7	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167417200	C	C	167417200	1	2	198	0	1	0	0	0	0	0	0	0	2975	1305	45	4		4	CCR6	6	167417200	5'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	1553440	167417200	3697867	252	158022											
MAD1L1	8379	broad.mit.edu	37	chr7	2041574	2041574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttccccgctcaacgcagcTtccgacgacagaagaggcag	10	16	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2041574	A	A	2041574	1	1	198	0	1	0	0	0	0	0	0	0	9235	1624	56	5		5	MAD1L1	7	2041574	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08		2041574	157097089	253	158023											
RBAK	57786	broad.mit.edu	37	chr7	5085978	5085978	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccagcgacagcagccccGccccggcctctcgggagccg	14	20	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5085978	T	T	5085978	1	4	198	0	1	0	0	0	0	0	0	0	13208	1102	38	3		3	RBAK	7	5085978	5'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	3044404	5085978	154052685	254	158024											
ADCY1	107	broad.mit.edu	37	chr7	45699488	45699488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccctccctcctggcatGgacggacttgcatgggagca	14	13	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45699488	T	T	45699488	1	4	198	0	1	0	0	0	0	0	0	0	292	1363	47	2		2	ADCY1	7	45699488	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	40613510	45699488	113439175	255	158025											
VSTM2A	222008	broad.mit.edu	37	chr7	54636701	54636701	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttataacttcttccgcaGgtgcgaggatagctacaagc	9	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54636701	T	T	54636701	5	4	198	1	0	0	0	0	0	0	1	0	17356	1014	35	2	652	2	VSTM2A	7	54636701	Splice_Site	SNP	G	TCGA-67-4679-01B-01D-1753-08	8937213	54636701	104501962	256	158026											
ZNF138	7697	broad.mit.edu	37	chr7	64255019	64255019	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaccggtcggaagtggctgTggcagtactcgggtcttccc	15	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64255019	A	A	64255019	1	1	198	0	1	0	0	0	0	0	0	0	17853	1711	59	5		5	ZNF138	7	64255019	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	9618318	64255019	94883644	257	158027											
SRRM3	222183	broad.mit.edu	37	chr7	75894699	75894699	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcctcacacagagtcccCaggccggaggtctcatcgcc	11	17	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75894699	T	T	75894699	3	4	198	1	0	0	0	0	1	0	0	0	15288	594	21	4	777	4	SRRM3	7	75894699	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	11639680	75894699	83243964	258	158028											
LRCH4	4034	broad.mit.edu	37	chr7	100179643	100179643	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctcaggggtccctttccTggtcccgtccccatcctcac	9	18	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100179643	A	A	100179643	1	1	198	0	1	0	0	0	0	0	0	0	9022	1595	55	5		5	LRCH4	7	100179643	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	24284944	100179643	58959020	259	158029											
AASS	10157	broad.mit.edu	37	chr7	121758574	121758574	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttttattattaaggtgtGagatgtgttttcaaaaaaat	7	1	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121758574	C	C	121758574	1	2	198	0	1	0	0	0	0	0	0	0	24	1305	45	4		4	AASS	7	121758574	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	21578931	121758574	37380089	260	158030											
PAX4	5078	broad.mit.edu	37	chr7	127253552	127253552	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtagccagctttccacgGgccactgaatcaggatactg	11	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127253552	T	T	127253552	2	4	198	1	0	0	0	0	0	0	0	1	11575	1219	43	2		2	PAX4	7	127253552	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	5494978	127253552	31885111	261	158031											
PAX4	5078	broad.mit.edu	37	chr7	127253622	127253622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacaaagtaagggcaccgGgagaggagcaaggcatgggt	16	8	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127253622	T	T	127253622	1	4	198	0	1	0	0	0	0	0	0	0	11575	1247	43	2		2	PAX4	7	127253622	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	70	127253622	31885041	262	158032											
FLNC	2318	broad.mit.edu	37	chr7	128496760	128496760	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggggccttctggggaggGgaaggatggaggctaagcca	20	7	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128496760	T	T	128496760	1	4	198	0	1	0	0	0	0	0	0	0	5993	1247	43	2		2	FLNC	7	128496760	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1243138	128496760	30641903	263	158033											
TSGA14	95681	broad.mit.edu	37	chr7	130039875	130039875	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctttaaaggtcaaaagatCttactaggatgatctgcagg	9	6	4	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130039875	A	A	130039875	1	1	198	0	1	0	0	0	0	0	0	0	16745	928	32	3		3	TSGA14	7	130039875	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1543115	130039875	29098788	264	158034											
SLC35B4	84912	broad.mit.edu	37	chr7	133985081	133985081	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatgtttttcttgaagaaCattattgtttaaagtcctgc	7	6	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133985081	T	T	133985081	1	4	198	0	1	0	0	0	0	0	0	0	14692	493	17	4		4	SLC35B4	7	133985081	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3945206	133985081	25153582	265	158035											
WDR91	29062	broad.mit.edu	37	chr7	134881195	134881195	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagcattttgcggggttctCggtaattacagagtggagag	15	6	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134881195	G	G	134881195	1	3	198	0	1	0	0	0	0	0	0	0	17465	899	31	4		4	WDR91	7	134881195	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	896114	134881195	24257468	266	158036											
AGK	55750	broad.mit.edu	37	chr7	141352708	141352708	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagagagaacagatgctcaCaagccccacccagtgagcag	11	12	1	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141352708	G	G	141352708	3	3	198	1	0	0	0	0	1	0	0	0	383	478	17	4	1311	4	AGK	7	141352708	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	6471513	141352708	17785955	267	158037											
TAS2R38	5726	broad.mit.edu	37	chr7	141673320	141673320	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgatgctgagacacagcAgcacacaatcactgttgctc	10	12	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141673320	T	T	141673320	3	4	198	1	0	0	0	0	1	0	0	0	15694	188	7	5	835	5	TAS2R38	7	141673320	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	320612	141673320	17465343	268	158038											
CLCN1	1180	broad.mit.edu	37	chr7	143028446	143028446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtgtgtggtgagcagGgtgtggagtgaggctgtaga	20	4	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143028446	T	T	143028446	1	4	198	0	1	0	0	0	0	0	0	0	3493	1247	43	2		2	CLCN1	7	143028446	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1355126	143028446	16110217	269	158039											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471330	146471330	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcgaaatcgttgttgaGtgtctctctccctctctgtc	7	11	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146471330	T	T	146471330	1	4	198	0	1	0	0	0	0	0	0	0	3679	1044	36	3		3	CNTNAP2	7	146471330	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	3442884	146471330	12667333	270	158040											
CNTNAP2	26047	broad.mit.edu	37	chr7	146741138	146741138	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaattgaagtttatggctGttcttactgtgagtatcgta	10	5	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146741138	C	C	146741138	3	2	198	1	0	0	0	0	1	0	0	0	3679	1377	48	4	556	4	CNTNAP2	7	146741138	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	269808	146741138	12397525	271	158041											
C7orf29	113763	broad.mit.edu	37	chr7	150027823	150027823	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtacaaggtgaaggagatTagagtgtctgaatactcttt	12	4	2	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150027823	C	C	150027823	2	2	198	1	0	0	0	0	0	0	0	1	2410	1742	61	5		5	C7orf29	7	150027823	Silent	SNP	T	TCGA-67-4679-01B-01D-1753-08	3286685	150027823	9110840	272	158042											
KCNH2	3757	broad.mit.edu	37	chr7	150656702	150656702	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggccccggtggttggtgtCatgagccggggaccccacca	17	13	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150656702	A	A	150656702	3	1	198	1	0	0	0	0	1	0	0	0	8102	826	29	3	3482	3	KCNH2	7	150656702	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	628879	150656702	8481961	273	158043											
GALNTL5	168391	broad.mit.edu	37	chr7	151711741	151711741	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcctagatctggatgtgtGgaggccaactctttataatc	10	8	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151711741	A	A	151711741	3	1	198	1	0	0	0	0	1	0	0	0	6286	1349	47	4	1065	4	GALNTL5	7	151711741	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1055039	151711741	7426922	274	158044											
MLL3	58508	broad.mit.edu	37	chr7	151944986	151944986	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcattaaaatcaccctaCctgtttggaccgaggtctac	6	11	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151944986	A	A	151944986	5	1	198	1	0	0	0	0	0	0	1	0	9715	521	18	3	12386	3	MLL3	7	151944986	Splice_Site	SNP	C	TCGA-67-4679-01B-01D-1753-08	233245	151944986	7193677	275	158045											
ACTR3B	57180	broad.mit.edu	37	chr7	152550643	152550643	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacgccgtgtggttcggagGctccatgctggcctcgactg	14	13	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152550643	T	T	152550643	3	4	198	1	0	0	0	0	1	0	0	0	213	1203	42	3	1184	3	ACTR3B	7	152550643	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	605657	152550643	6588020	276	158046											
CSMD1	64478	broad.mit.edu	37	chr8	3165998	3165998	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgtagttagggatgcccGgatcctcacattttaccaga	10	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3165998	T	T	3165998	3	4	198	1	0	0	0	0	1	0	0	0	3978	1116	39	1	7223	1	CSMD1	8	3165998	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08		3165998	143198024	277	158047											
SOX7	83595	broad.mit.edu	37	chr8	10587835	10587835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctcggagcccttgtcccCcgggggccgggggacggccg	18	16	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10587835	A	A	10587835	3	1	198	1	0	0	0	0	1	0	0	0	15070	623	22	2	1065	2	SOX7	8	10587835	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	7421837	10587835	135776187	278	158048											
LGI3	203190	broad.mit.edu	37	chr8	22012991	22012991	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agggtcctgcggggacacccGagtcagtactgtggggtctg	17	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22012991	A	A	22012991	1	1	198	0	1	0	0	0	0	0	0	0	8825	1073	37	4		4	LGI3	8	22012991	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	11425156	22012991	124351031	279	158049											
RHOBTB2	23221	broad.mit.edu	37	chr8	22865272	22865272	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcaggtatggaacaggCttggaaagcaagggggttct	14	7	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22865272	T	T	22865272	1	4	198	0	1	0	0	0	0	0	0	0	13443	812	28	4		4	RHOBTB2	8	22865272	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	852281	22865272	123498750	280	158050											
CCDC25	55246	broad.mit.edu	37	chr8	27606050	27606050	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctatctgccccacatccaTgtcagctgttttcttcaggt	7	14	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27606050	A	A	27606050	3	1	198	1	0	0	0	0	1	0	0	0	2827	1464	51	5	332	5	CCDC25	8	27606050	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	4740778	27606050	118757972	281	158051											
HTRA4	203100	broad.mit.edu	37	chr8	38839120	38839120	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcttgttctggtcttgcActcatcagtttgcaaaactt	7	10	5	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38839120	G	G	38839120	1	3	198	0	1	0	0	0	0	0	0	0	7526	174	6	5		5	HTRA4	8	38839120	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	11233070	38839120	107524902	282	158052											
CHRNB3	1142	broad.mit.edu	37	chr8	42586930	42586930	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accatggacgtcacgtttttCccgttcgaccgacagaactg	9	13	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42586930	T	T	42586930	2	4	198	1	0	0	0	0	0	0	0	1	3423	854	30	4		4	CHRNB3	8	42586930	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	3747810	42586930	103777092	283	158053											
SNTG1	54212	broad.mit.edu	37	chr8	51621445	51621445	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatactttctgttctacctaGtgcaagacctatgcatgtgt	7	9	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51621445	T	T	51621445	5	4	198	1	0	0	0	0	0	0	1	0	14988	1043	36	3	1249	3	SNTG1	8	51621445	Splice_Site	SNP	G	TCGA-67-4679-01B-01D-1753-08	9034515	51621445	94742577	284	158054											
PREX2	80243	broad.mit.edu	37	chr8	68981372	68981372	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggacgtgatttcaaagGtaacgacctctcccacaacc	8	13	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68981372	T	T	68981372	5	4	198	1	0	0	0	0	0	0	1	0	12583	1275	44	3	1490	3	PREX2	8	68981372	Splice_Site	SNP	G	TCGA-67-4679-01B-01D-1753-08	17359927	68981372	77382650	285	158055											
SULF1	23213	broad.mit.edu	37	chr8	70536413	70536413	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgccgtgggcccacctaccActgtccgagtgacacacaag	10	16	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70536413	T	T	70536413	3	4	198	1	0	0	0	0	1	0	0	0	15488	159	6	5	1873	5	SULF1	8	70536413	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	1555041	70536413	75827609	286	158056											
PRDM14	63978	broad.mit.edu	37	chr8	70971110	70971110	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaaacacaatgtctcttcaGttacttccctccctagttcc	4	15	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70971110	C	C	70971110	1	2	198	0	1	0	0	0	0	0	0	0	12561	1044	36	4		4	PRDM14	8	70971110	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	434697	70971110	75392912	287	158057											
TERF1	7013	broad.mit.edu	37	chr8	73921473	73921473	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgtccgggccgggactacGcggggggcggatgcgggctc	21	13	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73921473	T	T	73921473	1	4	198	0	1	0	0	0	0	0	0	0	15883	1102	38	3		3	TERF1	8	73921473	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	2950363	73921473	72442549	288	158058											
ZFHX4	79776	broad.mit.edu	37	chr8	77766816	77766816	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgactggacaactgctgggCagttccctcactcaaatgcc	9	13	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77766816	A	A	77766816	2	1	198	1	0	0	0	0	0	0	0	1	17761	697	25	3		3	ZFHX4	8	77766816	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	3845343	77766816	68597206	289	158059											
ZFHX4	79776	broad.mit.edu	37	chr8	77768318	77768318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattacttggctccgaccaCggttcggcagctgatggcac	12	12	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77768318	A	A	77768318	3	1	198	1	0	0	0	0	1	0	0	0	17761	536	19	3	9195	3	ZFHX4	8	77768318	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1502	77768318	68595704	290	158060											
PSKH2	85481	broad.mit.edu	37	chr8	87060875	87060875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcttcatggaagaccctGcagccatggtgatcacccag	10	12	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87060875	T	T	87060875	3	4	198	1	0	0	0	0	1	0	0	0	12771	1319	46	3	185	3	PSKH2	8	87060875	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	9292557	87060875	59303147	291	158061											
MMP16	4325	broad.mit.edu	37	chr8	89339469	89339470	+	5'UTR	DNP	CC	AG	AG													tcaatggatggacgagctccCcttcgttttctccctctctc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	89339470	AG	AG	89339469	1	1	198	0	1	0	0	0	0	0	0	0	9748	638	22	2		2	MMP16	8	89339469	5'UTR	DNP	CC	TCGA-67-4679-01B-01D-1753-08	2278594	89339469	57024553	292	158062											
NECAB1	64168	broad.mit.edu	37	chr8	91937844	91937844	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagtccagagacacaacagCttctccccaaacagccctca	6	17	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91937844	T	T	91937844	2	4	198	1	0	0	0	0	0	0	0	1	10399	796	28	4		4	NECAB1	8	91937844	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	2598375	91937844	54426178	293	158063											
CDH17	1015	broad.mit.edu	37	chr8	95161196	95161196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaaatatgtttgtgcatcCttgaaatatgttgtaaataa	6	4	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95161196	A	A	95161196	1	1	198	0	1	0	0	0	0	0	0	0	3132	696	24	2		2	CDH17	8	95161196	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	3223352	95161196	51202826	294	158064											
RIMS2	9699	broad.mit.edu	37	chr8	105263222	105263222	+	Intron	DEL	C	-	-													ttcatgtccatagtttattgCtcattctcctctgtgttttc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105263222	-	-	105263222	6	5	198	0	1	1	0	1	0	0	0	0	13479	812	28	0		0	RIMS2	8	105263222	Intron	DEL	C	TCGA-67-4679-01B-01D-1753-08	10102026	105263222	41100800	295	158065											
TRHR	7201	broad.mit.edu	37	chr8	110100469	110100469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattcaacccatcagaacaCaaatctgaatgtaaatacct	4	10	3	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110100469	A	A	110100469	3	1	198	1	0	0	0	0	1	0	0	0	16604	478	17	3	730	3	TRHR	8	110100469	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4837247	110100469	36263553	296	158066											
RAD21	5885	broad.mit.edu	37	chr8	117866674	117866674	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgacactgtcaacaattAgcttcctcttcctcttggct	5	13	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117866674	G	G	117866674	3	3	198	1	0	0	0	0	1	0	0	0	13089	420	15	5	948	5	RAD21	8	117866674	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	7766205	117866674	28497348	297	158067											
MTBP	27085	broad.mit.edu	37	chr8	121475884	121475884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacttattttaaggagtacAttgtttcatgggtaccatta	7	5	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121475884	G	G	121475884	1	3	198	0	1	0	0	0	0	0	0	0	10006	232	8	5		5	MTBP	8	121475884	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	3609210	121475884	24888138	298	158068											
ADCY8	114	broad.mit.edu	37	chr8	131797820	131797820	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctcacaatgagctacctctGatggttcaatatcctctagt	7	11	4	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131797820	A	A	131797820	1	1	198	0	1	0	0	0	0	0	0	0	300	1305	45	4		4	ADCY8	8	131797820	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	10321936	131797820	14566202	299	158069											
FAM135B	51059	broad.mit.edu	37	chr8	139163581	139163581	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggggtctccttgggcacaGatgagaaagggagacaggtg	17	7	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139163581	T	T	139163581	3	4	198	1	0	0	0	0	1	0	0	0	5495	942	33	3	1115	3	FAM135B	8	139163581	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	7365761	139163581	7200441	300	158070											
DENND3	22898	broad.mit.edu	37	chr8	142154254	142154254	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgaatttcagtttattgGctcttctgaagccctgtaaa	7	8	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142154254	T	T	142154254	3	4	198	1	0	0	0	0	1	0	0	0	4472	1203	42	3	405	3	DENND3	8	142154254	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2990673	142154254	4209768	301	158071											
DOCK8	81704	broad.mit.edu	37	chr9	463690	463690	+	Intron	SNP	A	T	T													agttgagagtcaaaagaggtAagaacagggcagaggaggcc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	463690	T	T	463690	1	4	198	0	1	0	0	0	0	0	0	0	4733	377	13	5		5	DOCK8	9	463690	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08		463690	140749741	302	158072	671	2									
DOCK8	81704	broad.mit.edu	37	chr9	463692	463692	+	Intron	SNP	G	A	A													ttgagagtcaaaagaggtaaGaacagggcagaggaggcctc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	463692	A	A	463692	1	1	198	0	1	0	0	0	0	0	0	0	4733	957	33	4		4	DOCK8	9	463692	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	2	463692	140749739	303	158073	671	2									
SMARCA2	6595	broad.mit.edu	37	chr9	2103997	2103997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttttgcatttttttggGttcagggctgaactgtatcg	11	5	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2103997	T	T	2103997	1	4	198	0	1	0	0	0	0	0	0	0	14883	1276	44	3		3	SMARCA2	9	2103997	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1640305	2103997	139109434	304	158074											
NFIB	4781	broad.mit.edu	37	chr9	14150231	14150231	+	Frame_Shift_Del	DEL	G	-	-													ggcttgggatttctccaattGggaagttgactccagttccc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14150231	-	-	14150231	7	5	198	1	0	1	0	1	0	0	0	0	10466	1348	47	0	563	0	NFIB	9	14150231	Frame_Shift_Del	DEL	G	TCGA-67-4679-01B-01D-1753-08	12046234	14150231	127063200	305	158075											
NDUFB6	4712	broad.mit.edu	37	chr9	32570991	32570992	+	Missense_Mutation	DNP	CC	AA	AA													ttcatgtaataatgaataatCcagacaggtacaagtacatg							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	32570992	AA	AA	32570991	3	1	198	1	0	0	0	0	1	0	0	0	10380	856	30	3	158	3	NDUFB6	9	32570991	Missense_Mutation	DNP	CC	TCGA-67-4679-01B-01D-1753-08	18420760	32570991	108642440	306	158076											
GBA2	57704	broad.mit.edu	37	chr9	35739150	35739150	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcagggaatgggcatgcctGaggaggggcacacagctatg	18	8	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35739150	A	A	35739150	1	1	198	0	1	0	0	0	0	0	0	0	6329	1305	45	4		4	GBA2	9	35739150	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	3168159	35739150	105474281	307	158077											
FAM75A3	727830	broad.mit.edu	37	chr9	40701599	40701599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgcagcatgctgcggctGggctggggcagagagggaga	21	7	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40701599	T	T	40701599	1	4	198	0	1	0	0	0	0	0	0	0	5672	1363	47	2		2	FAM75A3	9	40701599	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	4962449	40701599	100511832	308	158078											
ANKRD20A3	441425	broad.mit.edu	37	chr9	67965193	67965194	+	Intron	INS	-	TTG	TTG													cctatagcagtgttttttttINStttgtttgtttggttttggg					rs150724386	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTG	67965194	TTG	TTG	67965193	6	5	198	0	1	1	1	0	0	0	0	0	649	1856	64	0		0	ANKRD20A3	9	67965193	Intron	INS	-	TCGA-67-4679-01B-01D-1753-08	27263594	67965193	73248238	309	158079											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69416103	69416103	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttatctaactgttcttagttCatttgaactaaaccaatgaa	4	7	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69416103	T	T	69416103	1	4	198	0	1	0	0	0	0	0	0	0	650	841	29	4		4	ANKRD20A4	9	69416103	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1450910	69416103	71797328	310	158080											
TMEM2	23670	broad.mit.edu	37	chr9	74360174	74360174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccctcacattgaggcccCgggaaaagtccttttcaaag	9	12	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74360174	A	A	74360174	3	1	198	1	0	0	0	0	1	0	0	0	16244	652	23	1	3441	1	TMEM2	9	74360174	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4944071	74360174	66853257	311	158081											
C9orf85	138241	broad.mit.edu	37	chr9	74526699	74526699	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccagacctcagaagcacCagaatacgtttagcttcaaa	7	11	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74526699	T	T	74526699	4	4	198	1	0	0	0	0	0	1	0	0	2527	595	21	4	51	4	C9orf85	9	74526699	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	166525	74526699	66686732	312	158082											
C9orf95	54981	broad.mit.edu	37	chr9	77692219	77692219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtctttaataaatgctttGgatgatcaaagaaagatcag	8	4	3	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77692219	A	A	77692219	1	1	198	0	1	0	0	0	0	0	0	0	2533	1363	47	4		4	C9orf95	9	77692219	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	3165520	77692219	63521212	313	158083											
GAS1	2619	broad.mit.edu	37	chr9	89561033	89561033	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaggccgtcgcacacgcagTcgttgagcagcgccgccttg	14	15	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89561033	A	A	89561033	3	1	198	1	0	0	0	0	1	0	0	0	6306	1667	58	5	379	5	GAS1	9	89561033	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	11868814	89561033	51652398	314	158084											
FAM75C1	441452	broad.mit.edu	37	chr9	90535696	90535696	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaacagtcaagtttctgccCtctcctggtcgcaggagact	9	13	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90535696	G	G	90535696	3	3	198	1	0	0	0	0	1	0	0	0	5676	681	24	4	888	4	FAM75C1	9	90535696	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	974663	90535696	50677735	315	158085											
FAM75C1	441452	broad.mit.edu	37	chr9	90536806	90536806	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattgtgaggttttgggccAaacacaggtggggtctaccc	13	8	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90536806	G	G	90536806	3	3	198	1	0	0	0	0	1	0	0	0	5676	131	5	5	1998	5	FAM75C1	9	90536806	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	1110	90536806	50676625	316	158086											
STX17	55014	broad.mit.edu	37	chr9	102722207	102722207	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgttcatccaggagcatttCatactactgaagctgaagct	8	9	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102722207	G	G	102722207	3	3	198	1	0	0	0	0	1	0	0	0	15458	826	29	4	438	4	STX17	9	102722207	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	12185401	102722207	38491224	317	158087											
ALDOB	229	broad.mit.edu	37	chr9	104188805	104188805	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaactaagatttttcaaCtagaattggggccttcatat	6	7	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104188805	G	G	104188805	1	3	198	0	1	0	0	0	0	0	0	0	508	580	20	4		4	ALDOB	9	104188805	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1466598	104188805	37024626	318	158088											
TMEM38B	55151	broad.mit.edu	37	chr9	108536211	108536211	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgaggatacattgagttgGatgctatttggctggcagca	13	5	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108536211	A	A	108536211	4	1	198	1	0	0	0	0	0	1	0	0	16283	1183	41	4	748	4	TMEM38B	9	108536211	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4347406	108536211	32677220	319	158089											
ACTL7B	10880	broad.mit.edu	37	chr9	111617359	111617359	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtgatgagtttgccgtcCgggagctcgtagtccacgcg	14	10	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111617359	A	A	111617359	2	1	198	1	0	0	0	0	0	0	0	1	201	639	23	1		1	ACTL7B	9	111617359	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	3081148	111617359	29596072	320	158090											
MUSK	4593	broad.mit.edu	37	chr9	113530298	113530298	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccagctgctgaggctttGttgtgtaaccacatcttcca	10	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113530298	A	A	113530298	2	1	198	1	0	0	0	0	0	0	0	1	10083	1368	48	4		4	MUSK	9	113530298	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	1912939	113530298	27683133	321	158091											
COL27A1	85301	broad.mit.edu	37	chr9	116931081	116931081	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacttcccgtccagttcctGccagagtctcccgtcccgca	7	19	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931081	T	T	116931081	3	4	198	1	0	0	0	0	1	0	0	0	3717	1319	46	3	1256	3	COL27A1	9	116931081	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3400783	116931081	24282350	322	158092											
LHX6	26468	broad.mit.edu	37	chr9	124967083	124967083	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaggagggcatgggaggTggctgagctgggggcctgcc	21	8	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124967083	A	A	124967083	1	1	198	0	1	0	0	0	0	0	0	0	8847	1711	59	5		5	LHX6	9	124967083	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	8036002	124967083	16246348	323	158093											
OR1N2	138882	broad.mit.edu	37	chr9	125315400	125315400	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcccagcacagttctggCcacacagatgcatatctgta	7	13	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125315400	T	T	125315400	1	4	198	0	1	0	0	0	0	0	0	0	11064	754	26	4		4	OR1N2	9	125315400	5'Flank	SNP	C	TCGA-67-4679-01B-01D-1753-08	348317	125315400	15898031	324	158094											
OR1L3	26735	broad.mit.edu	37	chr9	125437680	125437681	+	Missense_Mutation	DNP	CC	AT	AT													cttcttatcagagaaaaagaCcatttcctatgctgaatgtc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	125437681	AT	AT	125437680	3	1	198	1	0	0	0	0	1	0	0	0	11058	507	18	3	274	3	OR1L3	9	125437680	Missense_Mutation	DNP	CC	TCGA-67-4679-01B-01D-1753-08	122280	125437680	15775751	325	158095											
WDR38	401551	broad.mit.edu	37	chr9	127619755	127619755	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccaaggcaggacttgcctCgagccccaccttctactctt	7	17	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127619755	A	A	127619755	1	1	198	0	1	0	0	0	0	0	0	0	17419	899	31	3		3	WDR38	9	127619755	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2182075	127619755	13593676	326	158096											
PPP6C	5537	broad.mit.edu	37	chr9	127952042	127952042	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcggcggcggcggctgtaGcagcggcggcggcagcggcg	22	13	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127952042	A	A	127952042	1	1	198	0	1	0	0	0	0	0	0	0	12508	986	34	4		4	PPP6C	9	127952042	5'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	332287	127952042	13261389	327	158097											
ZNF79	7633	broad.mit.edu	37	chr9	130207312	130207313	+	Frame_Shift_Del	DEL	TA	-	-													tccacaccggagaaaaacctTatgagtgtaatgagtgtggt							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130207313	-	-	130207312	7	5	198	1	0	1	0	1	0	0	0	0	18290	1754	61	0	1351	0	ZNF79	9	130207312	Frame_Shift_Del	DEL	TA	TCGA-67-4679-01B-01D-1753-08	2255270	130207312	11006119	328	158098											
ENG	2022	broad.mit.edu	37	chr9	130587685	130587685	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagcggacaggccaggcGgggagcgaggcctggcgtcg	20	11	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130587685	T	T	130587685	1	4	198	0	1	0	0	0	0	0	0	0	5159	1131	39	1		1	ENG	9	130587685	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	380373	130587685	10625746	329	158099											
AK1	203	broad.mit.edu	37	chr9	130630179	130630179	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggataagcggcttcctccGtctgtgctcagcagggcagg	14	12	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130630179	C	C	130630179	1	2	198	0	1	0	0	0	0	0	0	0	439	1160	40	4		4	AK1	9	130630179	3'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	42494	130630179	10583252	330	158100											
ZER1	10444	broad.mit.edu	37	chr9	131512987	131512987	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagcggtactcggaatTtgttaggtagaagagagcgg	15	6	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131512987	A	A	131512987	3	1	198	1	0	0	0	0	1	0	0	0	17751	1841	64	5	1069	5	ZER1	9	131512987	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	882808	131512987	9700444	331	158101											
TBC1D13	54662	broad.mit.edu	37	chr9	131566421	131566421	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaccccaggaacagacgGgtggaaagggacaggaggca	18	8	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131566421	T	T	131566421	1	4	198	0	1	0	0	0	0	0	0	0	15721	1247	43	2		2	TBC1D13	9	131566421	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	53434	131566421	9647010	332	158102											
ABL1	25	broad.mit.edu	37	chr9	133759670	133759671	+	Missense_Mutation	DNP	GG	TT	TT													agtccccaaagcccagcaatGgggctggggtccccaatgga							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	133759671	TT	TT	133759670	3	4	198	1	0	0	0	0	1	0	0	0	92	1348	47	2	2175	2	ABL1	9	133759670	Missense_Mutation	DNP	GG	TCGA-67-4679-01B-01D-1753-08	2193249	133759670	7453761	333	158103											
LAMC3	10319	broad.mit.edu	37	chr9	133927929	133927929	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcagcccctcatactgaCcttccgggtgccccccgggg	13	17	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133927929	T	T	133927929	3	4	198	1	0	0	0	0	1	0	0	0	8688	507	18	4	1720	4	LAMC3	9	133927929	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	168259	133927929	7285502	334	158104											
NUP214	8021	broad.mit.edu	37	chr9	134073346	134073346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctccctgcctatgtccGctggcagaagcacagaagag	10	16	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134073346	T	T	134073346	3	4	198	1	0	0	0	0	1	0	0	0	10857	1087	38	3	4579	3	NUP214	9	134073346	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	145417	134073346	7140085	335	158105											
GBGT1	26301	broad.mit.edu	37	chr9	136028893	136028893	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggcgggacagggctggtCtgcacgctagtgaagcactg	18	9	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136028893	A	A	136028893	1	1	198	0	1	0	0	0	0	0	0	0	6334	928	32	3		3	GBGT1	9	136028893	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	1955547	136028893	5184538	336	158106											
ADAMTS13	11093	broad.mit.edu	37	chr9	136304591	136304591	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttgactggaggactcccaCccagttagctagactgcaaa	10	11	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136304591	T	T	136304591	1	4	198	0	1	0	0	0	0	0	0	0	258	522	18	4		4	ADAMTS13	9	136304591	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	275698	136304591	4908840	337	158107											
COL5A1	1289	broad.mit.edu	37	chr9	137623349	137623349	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccctctgcagccagctcCgcctccaggggaaggtgcgg	13	16	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137623349	T	T	137623349	3	4	198	1	0	0	0	0	1	0	0	0	3728	652	23	4	1202	4	COL5A1	9	137623349	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1318758	137623349	3590082	338	158108											
PNPLA7	375775	broad.mit.edu	37	chr9	140400360	140400360	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgacaccaaagccggcggCgcccccaatgcaccagcaag	10	17	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140400360	A	A	140400360	1	1	198	0	1	0	0	0	0	0	0	0	12265	783	27	3		3	PNPLA7	9	140400360	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2777011	140400360	813071	339	158109											
CACNA1B	774	broad.mit.edu	37	chr9	140901189	140901189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggaaggcggccatggggGcttgccctgtgttctctcca	16	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140901189	T	T	140901189	1	4	198	0	1	0	0	0	0	0	0	0	2565	1218	42	3		3	CACNA1B	9	140901189	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	500829	140901189	312242	340	158110											
NEBL	10529	broad.mit.edu	37	chr10	21120447	21120447	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagctctctggacatcaagAgtgtctgtgctcacctgcat	9	11	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21120447	C	C	21120447	2	2	198	1	0	0	0	0	0	0	0	1	10398	291	11	5		5	NEBL	10	21120447	Silent	SNP	A	TCGA-67-4679-01B-01D-1753-08		21120447	114414300	341	158111											
EPC1	80314	broad.mit.edu	37	chr10	32581941	32581941	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtctgcattttttcagtaCgccttctaaaagccacataa	6	10	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32581941	T	T	32581941	3	4	198	1	0	0	0	0	1	0	0	0	5202	536	19	4	1917	4	EPC1	10	32581941	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	11461494	32581941	102952806	342	158112											
RET	5979	broad.mit.edu	37	chr10	43620238	43620238	+	Intron	DEL	G	-	-													gacagagcacactgggcccaGggtacagggcagggtgcgat							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43620238	-	-	43620238	6	5	198	0	1	1	0	1	0	0	0	0	13343	1015	35	0		0	RET	10	43620238	Intron	DEL	G	TCGA-67-4679-01B-01D-1753-08	11038297	43620238	91914509	343	158113											
OR13A1	79290	broad.mit.edu	37	chr10	45799491	45799491	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaggagcagcagctctgagGatgcagcccacgtgaggaaa	15	9	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45799491	A	A	45799491	3	1	198	1	0	0	0	0	1	0	0	0	11027	1174	41	4	610	4	OR13A1	10	45799491	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2179253	45799491	89735256	344	158114											
MARCH8	220972	broad.mit.edu	37	chr10	45984976	45984976	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattccctgaactagaattTgcaaagcacaacctactata	4	11	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45984976	A	A	45984976	1	1	198	0	1	0	0	0	0	0	0	0	9399	1827	63	5		5	MARCH8	10	45984976	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	185485	45984976	89549771	345	158115											
ANUBL1	93550	broad.mit.edu	37	chr10	46158965	46158965	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacaaatttaattttcatatCctaaaaacaaagaaagatga	3	5	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46158965	G	G	46158965	1	3	198	0	1	0	0	0	0	0	0	0	713	870	30	4		4	ANUBL1	10	46158965	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	173989	46158965	89375782	346	158116											
RBP3	5949	broad.mit.edu	37	chr10	48389149	48389149	+	Frame_Shift_Del	DEL	G	-	-													gtccagcagcggcaccgtgcGggtgtgcagcaggttgcccg					rs149750989	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48389149	-	-	48389149	7	5	198	1	0	1	0	1	0	0	0	0	13265	1116	39	0	2030	0	RBP3	10	48389149	Frame_Shift_Del	DEL	G	TCGA-67-4679-01B-01D-1753-08	2230184	48389149	87145598	347	158117											
MAPK8	5599	broad.mit.edu	37	chr10	49632174	49632174	+	Intron	DEL	C	-	-													attatgggagaaatggtttgCcacaaaatcctctttccagg							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49632174	-	-	49632174	6	5	198	0	1	1	0	1	0	0	0	0	9375	747	26	0		0	MAPK8	10	49632174	Intron	DEL	C	TCGA-67-4679-01B-01D-1753-08	1243025	49632174	85902573	348	158118											
BICC1	80114	broad.mit.edu	37	chr10	60475257	60475257	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtggcaggccctcttcGgccatctctctggcctggtt	11	15	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60475257	A	A	60475257	1	1	198	0	1	0	0	0	0	0	0	0	1433	1131	39	4		4	BICC1	10	60475257	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	10843083	60475257	75059490	349	158119											
HNRNPH3	3189	broad.mit.edu	37	chr10	70101065	70101065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaaagataaaaataacatGcgtaagtggtgtctttggca	9	5	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70101065	T	T	70101065	3	4	198	1	0	0	0	0	1	0	0	0	7335	1333	46	3	796	3	HNRNPH3	10	70101065	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	9625808	70101065	65433682	350	158120											
POLR3A	11128	broad.mit.edu	37	chr10	79742445	79742445	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcaggaactgcagcacgTagtacatggagctcttgctg	11	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79742445	A	A	79742445	3	1	198	1	0	0	0	0	1	0	0	0	12323	1638	57	5	632	5	POLR3A	10	79742445	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	9641380	79742445	55792302	351	158121											
OPN4	94233	broad.mit.edu	37	chr10	88419155	88419155	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttctctgctgcttcgtgTtcttcctccctctgcttatc	6	15	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88419155	C	C	88419155	3	2	198	1	0	0	0	0	1	0	0	0	10976	1725	60	5	785	5	OPN4	10	88419155	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	8676710	88419155	47115592	352	158122											
RRP12	23223	broad.mit.edu	37	chr10	99125989	99125989	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcctggccctggctgcgtGgctggggtgtagagtttggc	19	10	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99125989	A	A	99125989	2	1	198	1	0	0	0	0	0	0	0	1	13797	1362	47	4		4	RRP12	10	99125989	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	10706834	99125989	36408758	353	158123											
PAX2	5076	broad.mit.edu	37	chr10	102509565	102509565	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggccggcccctacccgacGtggtgaggcagcgcatcgtg	15	15	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102509565	C	C	102509565	3	2	198	1	0	0	0	0	1	0	0	0	11573	1145	40	4	112	4	PAX2	10	102509565	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3383576	102509565	33025182	354	158124											
TLX1	3195	broad.mit.edu	37	chr10	102891257	102891257	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccccccgagccgagcgcagCgagcgccgccgcccgggccc	15	22	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102891257	G	G	102891257	1	3	198	0	1	0	0	0	0	0	0	0	16082	783	27	4		4	TLX1	10	102891257	5'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	381692	102891257	32643490	355	158125											
C10orf81	79949	broad.mit.edu	37	chr10	115531754	115531754	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatggaacaaagttctccagGatttaggcaaactcacctac	7	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115531754	A	A	115531754	3	1	198	1	0	0	0	0	1	0	0	0	1630	1174	41	4	604	4	C10orf81	10	115531754	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	12640497	115531754	20002993	356	158126											
VWA2	340706	broad.mit.edu	37	chr10	116008476	116008476	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtagttatatcaacatgCcccctttcctgttgctggaa	7	12	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116008476	T	T	116008476	3	4	198	1	0	0	0	0	1	0	0	0	17366	739	26	4	6	4	VWA2	10	116008476	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	476722	116008476	19526271	357	158127											
AFAP1L2	84632	broad.mit.edu	37	chr10	116075543	116075543	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctgcaaggaagaccagctCggtcagggccccatggggca	14	13	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116075543	A	A	116075543	1	1	198	0	1	0	0	0	0	0	0	0	355	899	31	3		3	AFAP1L2	10	116075543	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	67067	116075543	19459204	358	158128											
ATRNL1	26033	broad.mit.edu	37	chr10	117704336	117704336	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtactgttttacttcgggCttctgttaaagctgttctat	8	8	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117704336	A	A	117704336	1	1	198	0	1	0	0	0	0	0	0	0	1211	812	28	3		3	ATRNL1	10	117704336	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	1628793	117704336	17830411	359	158129											
GFRA1	2674	broad.mit.edu	37	chr10	117849335	117849335	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggcttgttcttaacccGgagggcagtggtggtagtgg	18	7	1	0	rs147029195		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117849335	A	A	117849335	3	1	198	1	0	0	0	0	1	0	0	0	6411	1115	39	4	295	4	GFRA1	10	117849335	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	144999	117849335	17685412	360	158130											
HSPA12A	259217	broad.mit.edu	37	chr10	118460328	118460328	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatcaaggtaaatggacactGatttctgcttggaagagacc	10	7	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118460328	A	A	118460328	1	1	198	0	1	0	0	0	0	0	0	0	7473	1305	45	4		4	HSPA12A	10	118460328	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	610993	118460328	17074419	361	158131											
DMBT1	1755	broad.mit.edu	37	chr10	124359698	124359698	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagctctcctgtttctctGtgtggatactgtggggcata	12	9	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124359698	T	T	124359698	1	4	198	0	1	0	0	0	0	0	0	0	4617	1392	48	3		3	DMBT1	10	124359698	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	5899370	124359698	11175049	362	158132											
MMP21	118856	broad.mit.edu	37	chr10	127458921	127458921	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accttgaaaaaaataacgttCatctcttttccatgtccaga	4	10	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127458921	T	T	127458921	3	4	198	1	0	0	0	0	1	0	0	0	9753	835	29	4	502	4	MMP21	10	127458921	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	3099223	127458921	8075826	363	158133											
ADAM8	101	broad.mit.edu	37	chr10	135083318	135083318	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccccagcctcaggctccCgtgtccagagctgtccccag	9	20	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135083318	T	T	135083318	1	4	198	0	1	0	0	0	0	0	0	0	252	667	23	4		4	ADAM8	10	135083318	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	7624397	135083318	451429	364	158134											
IFITM5	387733	broad.mit.edu	37	chr11	298710	298710	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaaccaccttctgatctcGggcctgcagagagaccagac	9	15	2	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	298710	A	A	298710	4	1	198	1	0	0	0	0	0	1	0	0	7599	1124	39	4	212	4	IFITM5	11	298710	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08		298710	134707806	365	158135											
BRSK2	9024	broad.mit.edu	37	chr11	1475705	1475705	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcacagcctctgtctccCactgcccaggctggcgaaga	9	17	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1475705	A	A	1475705	1	1	198	0	1	0	0	0	0	0	0	0	1533	609	21	2		2	BRSK2	11	1475705	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1176995	1475705	133530811	366	158136											
TH	7054	broad.mit.edu	37	chr11	2189211	2189211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctgtgctggggtgggGgcacaggccacggaggctcc	21	10	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2189211	T	T	2189211	1	4	198	0	1	0	0	0	0	0	0	0	15961	1247	43	2		2	TH	11	2189211	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	713506	2189211	132817305	367	158137											
CARS	833	broad.mit.edu	37	chr11	3059249	3059249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccgacatttgacccgaaCgggctgtctgggagatgtgt	15	10	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3059249	A	A	3059249	1	1	198	0	1	0	0	0	0	0	0	0	2683	551	19	3		3	CARS	11	3059249	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	870038	3059249	131947267	368	158138											
OR52A4	390053	broad.mit.edu	37	chr11	5142215	5142215	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccatagaccttattaatGtaaacatcttcagtggcaag	6	8	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5142215	T	T	5142215	4	4	198	1	0	0	0	0	0	1	0	0	11203	1372	48	3	324	3	OR52A4	11	5142215	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2082966	5142215	129864301	369	158139											
OR51V1	283111	broad.mit.edu	37	chr11	5221039	5221039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgacactgtagatgatggGattcattaaaggtgggaaaa	12	4	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5221039	T	T	5221039	3	4	198	1	0	0	0	0	1	0	0	0	11201	1174	41	3	76	3	OR51V1	11	5221039	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	78824	5221039	129785477	370	158140											
TRIM3	10612	broad.mit.edu	37	chr11	6478596	6478596	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcgctgctgcagtgcttgcTccaggtcctcgaacgctgca	12	14	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6478596	A	A	6478596	3	1	198	1	0	0	0	0	1	0	0	0	16628	1551	54	5	1640	5	TRIM3	11	6478596	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	1257557	6478596	128527920	371	158141											
TPP1	1200	broad.mit.edu	37	chr11	6637760	6637760	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttttttttttttttttttGagggatgggcacaaagatag	9	2	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6637760	C	C	6637760	1	2	198	0	1	0	0	0	0	0	0	0	16535	1305	45	4		4	TPP1	11	6637760	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	159164	6637760	128368756	372	158142											
OR10A2	341276	broad.mit.edu	37	chr11	6891570	6891570	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaccattctggtggtcatGatcccctgcttgctgatctt	10	11	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6891570	A	A	6891570	3	1	198	1	0	0	0	0	1	0	0	0	10984	1290	45	4	587	4	OR10A2	11	6891570	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	253810	6891570	128114946	373	158143											
USH1C	10083	broad.mit.edu	37	chr11	17531201	17531201	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccgggaccttgtggggtGggttggagggtggagggtgg	25	5	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17531201	T	T	17531201	1	4	198	0	1	0	0	0	0	0	0	0	17160	1348	47	2		2	USH1C	11	17531201	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	10639631	17531201	117475315	374	158144											
HPS5	11234	broad.mit.edu	37	chr11	18317440	18317440	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacaagttatatggaaaaCaagagacttcctttttctca	6	7	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18317440	A	A	18317440	1	1	198	0	1	0	0	0	0	0	0	0	7409	493	17	3		3	HPS5	11	18317440	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	786239	18317440	116689076	375	158145											
API5	8539	broad.mit.edu	37	chr11	43345189	43345189	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagtacccctcttctctgtGagctctttatttttacacac	5	13	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43345189	T	T	43345189	1	4	198	0	1	0	0	0	0	0	0	0	775	1305	45	3		3	API5	11	43345189	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	25027749	43345189	91661327	376	158146											
OR4C46	119749	broad.mit.edu	37	chr11	51515921	51515921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaactttgccctcctgctgGtctcctatgtggtcatcttg	8	12	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51515921	T	T	51515921	3	4	198	1	0	0	0	0	1	0	0	0	11145	1261	44	3	642	3	OR4C46	11	51515921	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	8170732	51515921	83490595	377	158147											
OR5I1	10798	broad.mit.edu	37	chr11	55703522	55703522	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagcgatcataggccatggCggccaggatgaaggattctg	14	8	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55703522	T	T	55703522	3	4	198	1	0	0	0	0	1	0	0	0	11258	768	27	4	592	4	OR5I1	11	55703522	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4187601	55703522	79302994	378	158148											
OR5F1	338674	broad.mit.edu	37	chr11	55761971	55761971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgattaagaggatcatcCcgagatttcccagtactgta	8	10	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55761971	A	A	55761971	3	1	198	1	0	0	0	0	1	0	0	0	11252	623	22	2	816	2	OR5F1	11	55761971	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	58449	55761971	79244545	379	158149											
OR8J3	81168	broad.mit.edu	37	chr11	55904334	55904334	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcaggctgtagatcaaGggattcagcataggaatcac	10	9	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55904334	T	T	55904334	2	4	198	1	0	0	0	0	0	0	0	1	11336	987	35	2		2	OR8J3	11	55904334	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	142363	55904334	79102182	380	158150											
OR10Q1	219960	broad.mit.edu	37	chr11	57995776	57995776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtcagcgcaggccaggCgcaggacgggaggcacatcg	18	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995776	T	T	57995776	3	4	198	1	0	0	0	0	1	0	0	0	11010	768	27	4	391	4	OR10Q1	11	57995776	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2091442	57995776	77010740	381	158151											
MS4A3	932	broad.mit.edu	37	chr11	59829847	59829847	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttaaccatttcaagcacCgacatctcctttctgaggaa	5	12	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59829847	T	T	59829847	1	4	198	0	1	0	0	0	0	0	0	0	9955	667	23	4		4	MS4A3	11	59829847	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1834071	59829847	75176669	382	158152											
VWCE	220001	broad.mit.edu	37	chr11	61053874	61053874	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcacacagtggccctcGcaggaggaggttacacattc	12	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61053874	T	T	61053874	4	4	198	1	0	0	0	0	0	1	0	0	17372	1079	38	3	2478	3	VWCE	11	61053874	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1224027	61053874	73952642	383	158153											
SLC22A25	387601	broad.mit.edu	37	chr11	62985219	62985219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccaaacctgagaaacagGggcacattagataatgggaa	10	9	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62985219	T	T	62985219	1	4	198	0	1	0	0	0	0	0	0	0	14568	1247	43	2		2	SLC22A25	11	62985219	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1931345	62985219	72021297	384	158154											
ESRRA	2101	broad.mit.edu	37	chr11	64082370	64082370	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcaccatcagctgggcCaagagcatcccaggtaaagg	13	11	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64082370	A	A	64082370	2	1	198	1	0	0	0	0	0	0	0	1	5302	581	21	2		2	ESRRA	11	64082370	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	1097151	64082370	70924146	385	158155											
ADRBK1	156	broad.mit.edu	37	chr11	67048136	67048136	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtggcggctgggtggggAggctcacgacagcatcatcc	18	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67048136	G	G	67048136	1	3	198	0	1	0	0	0	0	0	0	0	343	319	11	5		5	ADRBK1	11	67048136	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	2965766	67048136	67958380	386	158156											
MTL5	9633	broad.mit.edu	37	chr11	68517945	68517945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgaacgcgtgcaggacggGttccttggggtccgccgggc	18	11	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68517945	T	T	68517945	3	4	198	1	0	0	0	0	1	0	0	0	10030	1261	44	3	1382	3	MTL5	11	68517945	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1469809	68517945	66488571	387	158157											
P4HA3	283208	broad.mit.edu	37	chr11	73980583	73980583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctgggaattggggaagaCctctttttggccctcctccc	10	12	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73980583	A	A	73980583	1	1	198	0	1	0	0	0	0	0	0	0	11452	522	18	3		3	P4HA3	11	73980583	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	5462638	73980583	61025933	388	158158											
MYO7A	4647	broad.mit.edu	37	chr11	76872065	76872065	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gattgtggacaagatcaacgCagcaatttacaagcctccct	8	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76872065	G	G	76872065	3	3	198	1	0	0	0	0	1	0	0	0	10176	710	25	4	1289	4	MYO7A	11	76872065	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2891482	76872065	58134451	389	158159											
RAB30	27314	broad.mit.edu	37	chr11	82698683	82698683	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgttctatctcccgcagccActcaggaaggcaacggaagg	11	12	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82698683	T	T	82698683	3	4	198	1	0	0	0	0	1	0	0	0	13027	159	6	5	312	5	RAB30	11	82698683	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	5826618	82698683	52307833	390	158160											
FOLH1B	219595	broad.mit.edu	37	chr11	89402588	89402588	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagaaaaatgggtggctcAgcaccaccagatagcagctg	11	10	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89402588	G	G	89402588	2	3	198	1	0	0	0	0	0	0	0	1	6038	175	7	5		5	FOLH1B	11	89402588	Silent	SNP	A	TCGA-67-4679-01B-01D-1753-08	6703905	89402588	45603928	391	158161											
FAT3	120114	broad.mit.edu	37	chr11	92257849	92257849	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggagacaatggggtcataCtggctaacagtgtatgccac	13	9	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92257849	T	T	92257849	2	4	198	1	0	0	0	0	0	0	0	1	5748	576	20	4		4	FAT3	11	92257849	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	2855261	92257849	42748667	392	158162											
FAT3	120114	broad.mit.edu	37	chr11	92531124	92531124	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcacagatcagggatccCcgccaatgtctgctactgca	9	13	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531124	A	A	92531124	3	1	198	1	0	0	0	0	1	0	0	0	5748	623	22	2	4979	2	FAT3	11	92531124	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	273275	92531124	42475392	393	158163											
PGR	5241	broad.mit.edu	37	chr11	100920842	100920842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaacaggaaaaaaaatagtGtctcagccagtttaggtaat	9	6	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100920842	T	T	100920842	1	4	198	0	1	0	0	0	0	0	0	0	11900	1392	48	3		3	PGR	11	100920842	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	8389718	100920842	34085674	394	158164											
PIH1D2	120379	broad.mit.edu	37	chr11	111941721	111941721	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatacaggatccaaaaacatCttaaagcagtttaattttcc	4	8	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111941721	G	G	111941721	1	3	198	0	1	0	0	0	0	0	0	0	12002	928	32	4		4	PIH1D2	11	111941721	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	11020879	111941721	23064795	395	158165											
HTR3A	3359	broad.mit.edu	37	chr11	113860510	113860510	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacagcccagtggaggaggGggtacagtcctggttaggtg	18	7	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113860510	T	T	113860510	1	4	198	0	1	0	0	0	0	0	0	0	7514	1247	43	2		2	HTR3A	11	113860510	3'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	1918789	113860510	21146006	396	158166											
BUD13	84811	broad.mit.edu	37	chr11	116640920	116640920	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagctgtccagctcacatcAtcatccacaatccgcattct	4	15	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116640920	T	T	116640920	3	4	198	1	0	0	0	0	1	0	0	0	1583	214	8	5	1733	5	BUD13	11	116640920	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	2780410	116640920	18365596	397	158167											
HEPACAM	220296	broad.mit.edu	37	chr11	124794933	124794933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccatggatcaggcgcaCggggctggtgatgttcaccc	16	11	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124794933	A	A	124794933	3	1	198	1	0	0	0	0	1	0	0	0	7119	536	19	3	1156	3	HEPACAM	11	124794933	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	8154013	124794933	10211583	398	158168											
STT3A	3703	broad.mit.edu	37	chr11	125481361	125481361	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagcaacctgtctgatgccCggatttttatcatcatgtat	7	9	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125481361	T	T	125481361	3	4	198	1	0	0	0	0	1	0	0	0	15451	643	23	4	1194	4	STT3A	11	125481361	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	686428	125481361	9525155	399	158169											
PATE1	160065	broad.mit.edu	37	chr11	125616667	125616667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtggggtgaggtgagcacCaggggccaaaaaaaaccaaa	15	7	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125616667	A	A	125616667	1	1	198	0	1	0	0	0	0	0	0	0	11567	609	21	2		2	PATE1	11	125616667	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	135306	125616667	9389849	400	158170											
ST14	6768	broad.mit.edu	37	chr11	130068228	130068228	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgccggccaccagttcacGtgcaagaacaagttctgcaa	10	13	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130068228	T	T	130068228	2	4	198	1	0	0	0	0	0	0	0	1	15329	1132	40	3		3	ST14	11	130068228	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	4451561	130068228	4938288	401	158171											
CACNA1C	775	broad.mit.edu	37	chr12	2742672	2742672	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctggccatggtgagggCgtccggaactccagaggcaa	15	12	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2742672	T	T	2742672	1	4	198	0	1	0	0	0	0	0	0	0	2566	783	27	4		4	CACNA1C	12	2742672	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08		2742672	131109223	402	158172											
CACNA1C	775	broad.mit.edu	37	chr12	2786340	2786340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcaagaagcgcaaagagCagggccttgtgggcaagccc	14	10	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2786340	A	A	2786340	3	1	198	1	0	0	0	0	1	0	0	0	2566	711	25	3	5450	3	CACNA1C	12	2786340	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	43668	2786340	131065555	403	158173											
AKAP3	10566	broad.mit.edu	37	chr12	4737964	4737964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcactctgacaggatccgtgGaggtgtccttaaaaatagac	11	9	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4737964	T	T	4737964	3	4	198	1	0	0	0	0	1	0	0	0	452	1174	41	3	2465	3	AKAP3	12	4737964	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1951624	4737964	129113931	404	158174											
APOBEC1	339	broad.mit.edu	37	chr12	7803640	7803640	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaattatgcagtgcagctcCagtgcgtacaacatcatcca	8	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7803640	A	A	7803640	2	1	198	1	0	0	0	0	0	0	0	1	789	581	21	2		2	APOBEC1	12	7803640	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	3065676	7803640	126048255	405	158175											
MFAP5	8076	broad.mit.edu	37	chr12	8804135	8804135	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggagtgaagaacactaatActctttgagaaataattgga	10	4	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8804135	T	T	8804135	1	4	198	0	1	0	0	0	0	0	0	0	9611	406	14	5		5	MFAP5	12	8804135	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	1000495	8804135	125047760	406	158176											
PZP	5858	broad.mit.edu	37	chr12	9302094	9302099	+	Intron	DEL	GCAGGG	-	-													ccttgtagagaatttaaattGcaggggcccttggagagtgg					rs150636378	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9302099	-	-	9302094	6	5	198	0	1	1	0	1	0	0	0	0	12977	1334	46	0		0	PZP	12	9302094	Intron	DEL	GCAGGG	TCGA-67-4679-01B-01D-1753-08	497959	9302094	124549801	407	158177											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25398284	G	G	25398284	3	3	198	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	16096190	25398284	108453611	408	158178											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777793	43777793	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagagcactacaaaggagtCcagttgatttgaacaattag	9	7	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43777793	G	G	43777793	1	3	198	0	1	0	0	0	0	0	0	0	266	870	30	4		4	ADAMTS20	12	43777793	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	18379509	43777793	90074102	409	158179											
SENP1	29843	broad.mit.edu	37	chr12	48478938	48478938	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taggggagcttaacaagaacTgccaccccaatttcctggtg	10	11	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48478938	C	C	48478938	1	2	198	0	1	0	0	0	0	0	0	0	14159	1595	55	5		5	SENP1	12	48478938	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	4701145	48478938	85372957	410	158180											
CSAD	51380	broad.mit.edu	37	chr12	53565130	53565130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttcgatgtgaatagggCcaggggcggcagtgtgcgga	17	9	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53565130	A	A	53565130	3	1	198	1	0	0	0	0	1	0	0	0	3957	739	26	3	974	3	CSAD	12	53565130	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	5086192	53565130	80286765	411	158181											
MUCL1	118430	broad.mit.edu	37	chr12	55250629	55250629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaccactgctgctcctaCcactgcaaccaccgctgctt	6	18	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55250629	A	A	55250629	3	1	198	1	0	0	0	0	1	0	0	0	10076	507	18	3	186	3	MUCL1	12	55250629	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1685499	55250629	78601266	412	158182											
MYO1A	4640	broad.mit.edu	37	chr12	57440555	57440555	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgggaagtctccttgacgtCtaacattctgcctttctaca	7	11	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57440555	A	A	57440555	1	1	198	0	1	0	0	0	0	0	0	0	10162	928	32	3		3	MYO1A	12	57440555	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2189926	57440555	76411340	413	158183											
SLC26A10	65012	broad.mit.edu	37	chr12	58015677	58015677	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcgcagaccctgcggtccTgtgggaactggccgctgccg	15	16	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58015677	C	C	58015677	1	2	198	0	1	0	0	0	0	0	0	0	14629	1595	55	5		5	SLC26A10	12	58015677	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	575122	58015677	75836218	414	158184											
SLC26A10	65012	broad.mit.edu	37	chr12	58017568	58017568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagaccagctctcatgtGggggtgggaggctctcttcc	15	10	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58017568	T	T	58017568	1	4	198	0	1	0	0	0	0	0	0	0	14629	1363	47	2		2	SLC26A10	12	58017568	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1891	58017568	75834327	415	158185											
LRIG3	121227	broad.mit.edu	37	chr12	59266566	59266566	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcttgaataggcatctaGgtgaggtctcctgagagctt	12	7	2	3	rs75850843	byFrequency;by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59266566	T	T	59266566	3	4	198	1	0	0	0	0	1	0	0	0	9033	991	35	2	215	2	LRIG3	12	59266566	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1248998	59266566	74585329	416	158186											
IL26	55801	broad.mit.edu	37	chr12	68618815	68618815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccatttggactacaagCcaacaattacaaagctcgtt	5	12	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68618815	A	A	68618815	1	1	198	0	1	0	0	0	0	0	0	0	7749	754	26	3		3	IL26	12	68618815	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	9352249	68618815	65233080	417	158187											
TSPAN8	7103	broad.mit.edu	37	chr12	71533330	71533330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttctaagccaaactaagCcaaatctaagccatatcagc	5	11	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71533330	A	A	71533330	1	1	198	0	1	0	0	0	0	0	0	0	16778	754	26	3		3	TSPAN8	12	71533330	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2914515	71533330	62318565	418	158188											
TPH2	121278	broad.mit.edu	37	chr12	72388308	72388308	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaataggtctggcgtctcTgggagcatcagatgaagatg	14	6	3	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72388308	G	G	72388308	3	3	198	1	0	0	0	0	1	0	0	0	16526	1580	55	5	1061	5	TPH2	12	72388308	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	854978	72388308	61463587	419	158189											
PHLDA1	22822	broad.mit.edu	37	chr12	76425198	76425198	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcgccgtcctcgccccaGcggctcccacggccgcctgc	11	23	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76425198	A	A	76425198	2	1	198	1	0	0	0	0	0	0	0	1	11943	958	34	4		4	PHLDA1	12	76425198	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	4036890	76425198	57426697	420	158190											
C12orf74	338809	broad.mit.edu	37	chr12	93100529	93100529	+	Frame_Shift_Del	DEL	C	-	-													cctccagtttgaccggcaagCcccaggccgcatctccacct							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93100529	-	-	93100529	7	5	198	1	0	1	0	1	0	0	0	0	1727	739	26	0	124	0	C12orf74	12	93100529	Frame_Shift_Del	DEL	C	TCGA-67-4679-01B-01D-1753-08	16675331	93100529	40751366	421	158191											
TMCC3	57458	broad.mit.edu	37	chr12	94972080	94972080	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgccatgtgccagaaaccctCtaggacttaggcataaacat	8	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94972080	A	A	94972080	1	1	198	0	1	0	0	0	0	0	0	0	16117	928	32	3		3	TMCC3	12	94972080	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1871551	94972080	38879815	422	158192											
APAF1	317	broad.mit.edu	37	chr12	99053024	99053024	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgcagaatctttgcacaCggttggatcaggatgagagt	12	7	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99053024	A	A	99053024	2	1	198	1	0	0	0	0	0	0	0	1	757	527	19	3		3	APAF1	12	99053024	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	4080944	99053024	34798871	423	158193											
STAB2	55576	broad.mit.edu	37	chr12	104096985	104096985	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccactgataagggagtgatCcatggcttgggaaaagttct	13	7	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104096985	A	A	104096985	2	1	198	1	0	0	0	0	0	0	0	1	15356	845	30	3		3	STAB2	12	104096985	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	5043961	104096985	29754910	424	158194											
C12orf51	283450	broad.mit.edu	37	chr12	112677973	112677973	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacatccagctcagtgttTcctagactatgcaagactgc	8	11	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112677973	A	A	112677973	1	1	198	0	1	0	0	0	0	0	0	0	1709	1798	62	5		5	C12orf51	12	112677973	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	8580988	112677973	21173922	425	158195											
RPH3A	22895	broad.mit.edu	37	chr12	113314634	113314634	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccacccccagaggaggaGgaagaggaagccaacagcta	12	13	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113314634	A	A	113314634	2	1	198	1	0	0	0	0	0	0	0	1	13662	991	35	4		4	RPH3A	12	113314634	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	636661	113314634	20537261	426	158196											
MED13L	23389	broad.mit.edu	37	chr12	116413289	116413289	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacggtacagcattaattTacatgcaccataaacatcaa	6	9	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116413289	G	G	116413289	1	3	198	0	1	0	0	0	0	0	0	0	9524	1769	61	5		5	MED13L	12	116413289	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	3098655	116413289	17438606	427	158197											
CAMKK2	10645	broad.mit.edu	37	chr12	121712338	121712338	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgatgacatggtgcatgCgccagcttcatccagcacac	9	13	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121712338	A	A	121712338	1	1	198	0	1	0	0	0	0	0	0	0	2633	783	27	3		3	CAMKK2	12	121712338	5'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	5299049	121712338	12139557	428	158198											
DIABLO	56616	broad.mit.edu	37	chr12	122693021	122693021	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctcttctatctgtgcttcTgccagcttggtttctgcttt	8	11	5	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122693021	A	A	122693021	2	1	198	1	0	0	0	0	0	0	0	1	4557	1567	55	5		5	DIABLO	12	122693021	Silent	SNP	T	TCGA-67-4679-01B-01D-1753-08	980683	122693021	11158874	429	158199											
SBNO1	55206	broad.mit.edu	37	chr12	123794212	123794212	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaagaatttctccactccaCattttccctggggacattgt	6	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123794212	T	T	123794212	1	4	198	0	1	0	0	0	0	0	0	0	13974	493	17	4		4	SBNO1	12	123794212	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1101191	123794212	10057683	430	158200											
DNAH10	196385	broad.mit.edu	37	chr12	124330219	124330219	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggtggacctgggaggtGgaagacgtcttccacaaagc	16	8	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124330219	T	T	124330219	2	4	198	1	0	0	0	0	0	0	0	1	4638	1335	47	2		2	DNAH10	12	124330219	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	536007	124330219	9521676	431	158201											
SFRS8	6433	broad.mit.edu	37	chr12	132195832	132195832	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaaagcggcgcgaaggagGaggccgggccaggcggtgcc	21	10	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132195832	A	A	132195832	3	1	198	1	0	0	0	0	1	0	0	0	14296	1175	41	4	60	4	SFRS8	12	132195832	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	7865613	132195832	1656063	432	158202											
EP400	57634	broad.mit.edu	37	chr12	132529273	132529274	+	Intron	DEL	CT	-	-													tcatgccggtgagtgctgccCtctccctttgtgtctgtgtg							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	132529274	-	-	132529273	6	5	198	0	1	1	0	1	0	0	0	0	5191	696	24	0		0	EP400	12	132529273	Intron	DEL	CT	TCGA-67-4679-01B-01D-1753-08	333441	132529273	1322622	433	158203											
GOLGA3	2802	broad.mit.edu	37	chr12	133378257	133378257	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaaaaacaaaaacatgccTgtgaactctaaaaacagaaa	5	7	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133378257	A	A	133378257	1	1	198	0	1	0	0	0	0	0	0	0	6618	1595	55	5		5	GOLGA3	12	133378257	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	848984	133378257	473638	434	158204											
TPTE2	93492	broad.mit.edu	37	chr13	20056589	20056589	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactaaaggtaagagatccAtcaatggctccctcctttca	6	12	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20056589	G	G	20056589	1	3	198	0	1	0	0	0	0	0	0	0	16555	232	8	5		5	TPTE2	13	20056589	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08		20056589	95113289	435	158205											
WASF3	10810	broad.mit.edu	37	chr13	27151321	27151321	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaacttcctaacttcctTggcatggatcttacctgtga	6	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27151321	A	A	27151321	1	1	198	0	1	0	0	0	0	0	0	0	17381	1827	63	5		5	WASF3	13	27151321	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	7094732	27151321	88018557	436	158206											
CDX2	1045	broad.mit.edu	37	chr13	28537437	28537437	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggtggctgctgctgctGttgctgctgcaacttcttct	12	11	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28537437	C	C	28537437	3	2	198	1	0	0	0	0	1	0	0	0	3213	1386	48	4	188	4	CDX2	13	28537437	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1386116	28537437	86632441	437	158207											
FLT1	2321	broad.mit.edu	37	chr13	28897159	28897159	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaccagtccctcaactggcAatcgcctgatgagaaatgag	9	11	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28897159	T	T	28897159	1	4	198	0	1	0	0	0	0	0	0	0	5999	145	5	5		5	FLT1	13	28897159	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	359722	28897159	86272719	438	158208											
SIAH3	283514	broad.mit.edu	37	chr13	46358033	46358033	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcgtcaccgggttggCgtgcagccccgcctcctggt	16	15	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46358033	A	A	46358033	3	1	198	1	0	0	0	0	1	0	0	0	14414	768	27	3	518	3	SIAH3	13	46358033	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	17460874	46358033	68811845	439	158209											
THSD1	55901	broad.mit.edu	37	chr13	52972283	52972283	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgtgtcgttgcttagtgcTacatggcctggctctctcaa	10	11	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52972283	A	A	52972283	2	1	198	1	0	0	0	0	0	0	0	1	16000	1509	53	5		5	THSD1	13	52972283	Silent	SNP	T	TCGA-67-4679-01B-01D-1753-08	6614250	52972283	62197595	440	158210											
PCDH17	27253	broad.mit.edu	37	chr13	58207804	58207804	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgtcatcgccctggtgcGggtcactgaccgggactctg	13	15	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207804	T	T	58207804	3	4	198	1	0	0	0	0	1	0	0	0	11606	1116	39	1	1126	1	PCDH17	13	58207804	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	5235521	58207804	56962074	441	158211											
TDRD3	81550	broad.mit.edu	37	chr13	61102923	61102923	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcaaaagaaaatccacttCctcaaggatctgtagattat	7	8	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61102923	T	T	61102923	3	4	198	1	0	0	0	0	1	0	0	0	15854	855	30	4	1606	4	TDRD3	13	61102923	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2895119	61102923	54066955	442	158212											
MYCBP2	23077	broad.mit.edu	37	chr13	77640183	77640183	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagatctgggtaggggttgAgcccttcatccaccaatgac	12	10	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77640183	G	G	77640183	3	3	198	1	0	0	0	0	1	0	0	0	10112	304	11	5	1588	5	MYCBP2	13	77640183	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	16537260	77640183	37529695	443	158213											
SCEL	8796	broad.mit.edu	37	chr13	78142562	78142562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattttattggaatacagcCatgcccctattgctctggca	7	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78142562	A	A	78142562	1	1	198	0	1	0	0	0	0	0	0	0	14000	609	21	2		2	SCEL	13	78142562	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	502379	78142562	37027316	444	158214											
DCT	1638	broad.mit.edu	37	chr13	95121343	95121343	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaggaagggggtttatgtCgtttggaagaaatttctgaa	14	2	1	2	rs139484792	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95121343	A	A	95121343	1	1	198	0	1	0	0	0	0	0	0	0	4337	899	31	3		3	DCT	13	95121343	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	16978781	95121343	20048535	445	158215											
ABCC4	10257	broad.mit.edu	37	chr13	95727813	95727813	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggactccgagctggggaAacagacagagaaaacagctc	12	10	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95727813	G	G	95727813	1	3	198	0	1	0	0	0	0	0	0	0	55	29	1	5		5	ABCC4	13	95727813	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	606470	95727813	19442065	446	158216											
NALCN	259232	broad.mit.edu	37	chr13	101736058	101736058	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaatcagagcattttggGtacccgggcgaggcggaaga	14	7	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101736058	T	T	101736058	1	4	198	0	1	0	0	0	0	0	0	0	10242	1276	44	3		3	NALCN	13	101736058	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	6008245	101736058	13433820	447	158217											
MYO16	23026	broad.mit.edu	37	chr13	109507894	109507894	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcgctttgggaacaatcAgatctatgtgagtgccctgg	13	8	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109507894	T	T	109507894	3	4	198	1	0	0	0	0	1	0	0	0	10158	188	7	5	1324	5	MYO16	13	109507894	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	7771836	109507894	5661984	448	158218											
MYO16	23026	broad.mit.edu	37	chr13	109614011	109614011	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctggaacaaggtcagtGgaacatgaccttctgacatt	10	10	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109614011	A	A	109614011	1	1	198	0	1	0	0	0	0	0	0	0	10158	1363	47	4		4	MYO16	13	109614011	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	106117	109614011	5555867	449	158219											
COL4A1	1282	broad.mit.edu	37	chr13	110831356	110831356	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctggagaccccacggagCctggcaatccaggaggtccc	12	16	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110831356	A	A	110831356	3	1	198	1	0	0	0	0	1	0	0	0	3721	739	26	3	2725	3	COL4A1	13	110831356	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1217345	110831356	4338522	450	158220											
COL4A1	1282	broad.mit.edu	37	chr13	110862109	110862109	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attatttgtttcagggtatcAgtttatggtactatcatcat	7	5	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110862109	T	T	110862109	1	4	198	0	1	0	0	0	0	0	0	0	3721	203	7	5		5	COL4A1	13	110862109	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	30753	110862109	4307769	451	158221											
BCL2L2	599	broad.mit.edu	37	chr14	23778191	23778191	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaagtccagggccaggtGgggctaggtgtggctggggg	22	6	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23778191	T	T	23778191	1	4	198	0	1	0	0	0	0	0	0	0	1379	1363	47	2		2	BCL2L2	14	23778191	3'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08		23778191	83571349	452	158222											
CMTM5	116173	broad.mit.edu	37	chr14	23848446	23848446	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttctggcttgcacctcaccCtataccttaacccaatggcc	6	16	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23848446	G	G	23848446	1	3	198	0	1	0	0	0	0	0	0	0	3618	696	24	4		4	CMTM5	14	23848446	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	70255	23848446	83501094	453	158223											
CMA1	1215	broad.mit.edu	37	chr14	24976666	24976666	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatttccaggtaggccatGtaggggcgggaatgtggctt	15	7	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24976666	T	T	24976666	4	4	198	1	0	0	0	0	0	1	0	0	3606	1372	48	3	654	3	CMA1	14	24976666	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1128220	24976666	82372874	454	158224											
HECTD1	25831	broad.mit.edu	37	chr14	31598245	31598245	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgctggtgcttgcactGgaagatgaccctacttctgt	12	9	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31598245	A	A	31598245	2	1	198	1	0	0	0	0	0	0	0	1	7106	1335	47	4		4	HECTD1	14	31598245	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	6621579	31598245	75751295	455	158225											
TXNDC16	57544	broad.mit.edu	37	chr14	53003522	53003522	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgttgcccctataaaaagTttaaaaacatattaatattg	4	5	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53003522	C	C	53003522	1	2	198	0	1	0	0	0	0	0	0	0	16921	1740	60	5		5	TXNDC16	14	53003522	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	21405277	53003522	54346018	456	158226											
KIAA0831	22863	broad.mit.edu	37	chr14	55836410	55836410	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagatcatcccacctgcaCtgctgctcgcgatgggtggg	14	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55836410	T	T	55836410	3	4	198	1	0	0	0	0	1	0	0	0	8265	565	20	4	76	4	KIAA0831	14	55836410	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2832888	55836410	51513130	457	158227											
RGS6	9628	broad.mit.edu	37	chr14	73006899	73006899	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctttggttgttgtttccTttggggtgggagggagtcca	15	7	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73006899	C	C	73006899	1	2	198	0	1	0	0	0	0	0	0	0	13418	1624	56	5		5	RGS6	14	73006899	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	17170489	73006899	34342641	458	158228											
DPF3	8110	broad.mit.edu	37	chr14	73360773	73360773	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcttacttacgctttcagGgggttgtgaatgacagtcgc	12	8	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73360773	T	T	73360773	2	4	198	1	0	0	0	0	0	0	0	1	4758	1219	43	2		2	DPF3	14	73360773	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	353874	73360773	33988767	459	158229											
ZC3H14	79882	broad.mit.edu	37	chr14	89034479	89034479	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtttctagggaacaacaCaattcgattcaccgtatggt	8	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89034479	G	G	89034479	3	3	198	1	0	0	0	0	1	0	0	0	17692	478	17	4	186	4	ZC3H14	14	89034479	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	15673706	89034479	18315061	460	158230											
C14orf159	80017	broad.mit.edu	37	chr14	91671273	91671273	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttctctgcagtcagtccaTagggcaccagggcagggagg	14	11	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91671273	C	C	91671273	1	2	198	0	1	0	0	0	0	0	0	0	1768	1421	49	5		5	C14orf159	14	91671273	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	2636794	91671273	15678267	461	158231											
C14orf49	161176	broad.mit.edu	37	chr14	95884179	95884179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggttaggtgggtggtgggCcattgtagcgcagcatgagc	19	6	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95884179	A	A	95884179	3	1	198	1	0	0	0	0	1	0	0	0	1789	739	26	3	19	3	C14orf49	14	95884179	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4212906	95884179	11465361	462	158232											
EML1	2009	broad.mit.edu	37	chr14	100374153	100374153	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtagccccctttcagcGggctcattcccaccccagcc	9	18	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100374153	T	T	100374153	1	4	198	0	1	0	0	0	0	0	0	0	5138	1131	39	1		1	EML1	14	100374153	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	4489974	100374153	6975387	463	158233											
GABRG3	2567	broad.mit.edu	37	chr15	27772783	27772783	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacaacatcggtgagctGcagtagcaaaggttctccgg	13	9	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27772783	T	T	27772783	1	4	198	0	1	0	0	0	0	0	0	0	6233	1334	46	3		3	GABRG3	15	27772783	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08		27772783	74758609	464	158234											
RYR3	6263	broad.mit.edu	37	chr15	34080643	34080644	+	Frame_Shift_Ins	INS	-	A	A													ctaccccatgctgatccgctINSacgtggacaacaacaggtac							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34080644	A	A	34080643	7	5	198	1	0	1	1	0	0	0	0	0	13881	1522	53	0	10080	0	RYR3	15	34080643	Frame_Shift_Ins	INS	-	TCGA-67-4679-01B-01D-1753-08	6307860	34080643	68450749	465	158235											
MEIS2	4212	broad.mit.edu	37	chr15	37184706	37184706	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgggtcaaattcctaaacaTttttatactttacccatcaa	4	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37184706	A	A	37184706	1	1	198	0	1	0	0	0	0	0	0	0	9561	1508	52	5		5	MEIS2	15	37184706	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	3104063	37184706	65346686	466	158236											
CASC5	57082	broad.mit.edu	37	chr15	40954447	40954447	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatattatttcagggtcccAttgctgttcagcctttgttt	8	8	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40954447	T	T	40954447	1	4	198	0	1	0	0	0	0	0	0	0	2689	232	8	5		5	CASC5	15	40954447	3'UTR	SNP	A	TCGA-67-4679-01B-01D-1753-08	3769741	40954447	61576945	467	158237											
SLC12A1	6557	broad.mit.edu	37	chr15	48500060	48500060	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacattatgaagaaacCtcttttggggatgaagctca	8	10	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48500060	T	T	48500060	2	4	198	1	0	0	0	0	0	0	0	1	14495	668	24	4		4	SLC12A1	15	48500060	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	7545613	48500060	54031332	468	158238											
HDC	3067	broad.mit.edu	37	chr15	50546236	50546236	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggacctttctgcttttgtGtgcagcatgttacttacctg	10	9	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50546236	A	A	50546236	1	1	198	0	1	0	0	0	0	0	0	0	7082	1392	48	4		4	HDC	15	50546236	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	2046176	50546236	51985156	469	158239											
TRPM7	54822	broad.mit.edu	37	chr15	50868037	50868037	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaaaggtccaaaatgcTattaaattttgtttttaata	5	4	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50868037	A	A	50868037	1	1	198	0	1	0	0	0	0	0	0	0	16716	1537	53	5		5	TRPM7	15	50868037	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	321801	50868037	51663355	470	158240											
SPG21	51324	broad.mit.edu	37	chr15	65261577	65261577	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaagcagctattttactTaaaaggaagcttacatccat	6	7	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65261577	G	G	65261577	1	3	198	0	1	0	0	0	0	0	0	0	15161	1769	61	5		5	SPG21	15	65261577	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	14393540	65261577	37269815	471	158241											
RASL12	51285	broad.mit.edu	37	chr15	65357561	65357562	+	Frame_Shift_Ins	INS	-	G	G													agtagtttcttacccaagttINSggggtcatattcactgataa							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65357562	G	G	65357561	7	5	198	1	0	1	1	0	0	0	0	0	13191	1812	63	0	662	0	RASL12	15	65357561	Frame_Shift_Ins	INS	-	TCGA-67-4679-01B-01D-1753-08	95984	65357561	37173831	472	158242											
LCTL	197021	broad.mit.edu	37	chr15	66845330	66845330	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgataatcacctgagcaaAgttaaggagcctcctaaatc	8	9	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66845330	T	T	66845330	3	4	198	1	0	0	0	0	1	0	0	0	8766	72	3	5	534	5	LCTL	15	66845330	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	1487769	66845330	35686062	473	158243											
MYO9A	4649	broad.mit.edu	37	chr15	72324975	72324976	+	Intron	INS	-	A	A													tttcactaaaaaaaaaaaatINSttttttttggaggggggatt							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72324976	A	A	72324975	6	5	198	0	1	1	1	0	0	0	0	0	10178	1508	52	0		0	MYO9A	15	72324975	Intron	INS	-	TCGA-67-4679-01B-01D-1753-08	5479645	72324975	30206417	474	158244											
HCN4	10021	broad.mit.edu	37	chr15	73616081	73616081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagaagtggtggcagcggCagcctgcagtggtgcctgga	17	10	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73616081	A	A	73616081	3	1	198	1	0	0	0	0	1	0	0	0	7065	710	25	3	1262	3	HCN4	15	73616081	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1291106	73616081	28915311	475	158245											
ODF3L1	161753	broad.mit.edu	37	chr15	76019567	76019567	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcttgctggggcccaacAcccctgtcagccgagctgct	10	17	2	0	rs80215855	byFrequency;by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76019567	C	C	76019567	3	2	198	1	0	0	0	0	1	0	0	0	10926	159	6	5	525	5	ODF3L1	15	76019567	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	2403486	76019567	26511825	476	158246											
SH3GL3	6457	broad.mit.edu	37	chr15	84245318	84245319	+	Intron	DNP	CC	AT	AT													tagcacctctctgagggactCcattctctttttttagcatc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	84245319	AT	AT	84245318	1	1	198	0	1	0	0	0	0	0	0	0	14365	870	30	3		3	SH3GL3	15	84245318	Intron	DNP	CC	TCGA-67-4679-01B-01D-1753-08	8225751	84245318	18286074	477	158247											
NTRK3	4916	broad.mit.edu	37	chr15	88476290	88476290	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcatgtattcaaagaccatGatgagggggtccccatcgcc	10	11	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88476290	A	A	88476290	2	1	198	1	0	0	0	0	0	0	0	1	10803	1280	45	4		4	NTRK3	15	88476290	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	4230972	88476290	14055102	478	158248											
HAPLN3	145864	broad.mit.edu	37	chr15	89421235	89421235	+	Frame_Shift_Del	DEL	C	-	-													agcagtaaacaccgtacaagCggctctgcgggtcggggaag							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89421235	-	-	89421235	7	5	198	1	0	1	0	1	0	0	0	0	7022	768	27	0	37	0	HAPLN3	15	89421235	Frame_Shift_Del	DEL	C	TCGA-67-4679-01B-01D-1753-08	944945	89421235	13110157	479	158249											
RGMA	56963	broad.mit.edu	37	chr15	93588628	93588628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctggttgagggggcagCcccgcaggcagaggtagaga	18	9	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93588628	A	A	93588628	3	1	198	1	0	0	0	0	1	0	0	0	13388	739	26	3	403	3	RGMA	15	93588628	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	4167393	93588628	8942764	480	158250											
SOX8	30812	broad.mit.edu	37	chr16	1033796	1033796	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcgcgtgcagcacaagaAggaccaccccgactacaagt	9	15	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1033796	G	G	1033796	3	3	198	1	0	0	0	0	1	0	0	0	15071	72	3	5	497	5	SOX8	16	1033796	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08		1033796	89320957	481	158251											
PKD1	5310	broad.mit.edu	37	chr16	2158452	2158452	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctctgtgtcagtggcGtgtccccaaatgacacgaca	12	11	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2158452	A	A	2158452	3	1	198	1	0	0	0	0	1	0	0	0	12058	1145	40	4	6323	4	PKD1	16	2158452	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1124656	2158452	88196301	482	158252											
MEFV	4210	broad.mit.edu	37	chr16	3304106	3304106	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatgagctatcgtgcccggCcagccattctttctctgcag	10	14	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3304106	G	G	3304106	1	3	198	0	1	0	0	0	0	0	0	0	9552	754	26	4		4	MEFV	16	3304106	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1145654	3304106	87050647	483	158253											
TRAP1	10131	broad.mit.edu	37	chr16	3735910	3735910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacggacggccagtacgtcCctgggacccgagacatcact	12	14	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3735910	A	A	3735910	1	1	198	0	1	0	0	0	0	0	0	0	16579	638	22	2		2	TRAP1	16	3735910	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	431804	3735910	86618843	484	158254											
ABAT	18	broad.mit.edu	37	chr16	8844366	8844366	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acggcaaccgaatgctggatCtttattcccagatctcctct	7	13	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8844366	G	G	8844366	3	3	198	1	0	0	0	0	1	0	0	0	27	913	32	4	300	4	ABAT	16	8844366	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	5108456	8844366	81510387	485	158255											
USP7	7874	broad.mit.edu	37	chr16	8992176	8992176	+	Intron	DEL	T	-	-													aggtagaaacaataagcaagTtccaataaaaattaaaattc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8992176	-	-	8992176	6	5	198	0	1	1	0	1	0	0	0	0	17215	1740	60	0		0	USP7	16	8992176	Intron	DEL	T	TCGA-67-4679-01B-01D-1753-08	147810	8992176	81362577	486	158256											
USP7	7874	broad.mit.edu	37	chr16	8992194	8992194	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttccaataaaaattaaaaTtcatagtattaaaaaaactt	2	4	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8992194	C	C	8992194	1	2	198	0	1	0	0	0	0	0	0	0	17215	1508	52	5		5	USP7	16	8992194	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	18	8992194	81362559	487	158257											
MYH11	4629	broad.mit.edu	37	chr16	15917022	15917022	+	Intron	DEL	C	-	-													ctggtccctcgcagtgcctgCcaaactccacattcctggca							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15917022	-	-	15917022	6	5	198	0	1	1	0	1	0	0	0	0	10125	754	26	0		0	MYH11	16	15917022	Intron	DEL	C	TCGA-67-4679-01B-01D-1753-08	6924828	15917022	74437731	488	158258											
ACSM2A	123876	broad.mit.edu	37	chr16	20482754	20482754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaggcagatacacacaCacctctgcacacacacctcc	5	19	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20482754	A	A	20482754	1	1	198	0	1	0	0	0	0	0	0	0	183	493	17	3		3	ACSM2A	16	20482754	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	4565732	20482754	69871999	489	158259											
ACSM2B	348158	broad.mit.edu	37	chr16	20563723	20563723	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgtgtgtgcagaggtGtgcgtgtatctgcctgcagg	19	6	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20563723	T	T	20563723	1	4	198	0	1	0	0	0	0	0	0	0	184	1392	48	3		3	ACSM2B	16	20563723	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	80969	20563723	69791030	490	158260											
PRRT2	112476	broad.mit.edu	37	chr16	29824280	29824280	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgagcgccctcttccctcCtcaccccaagcctatctcct	5	21	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29824280	T	T	29824280	1	4	198	0	1	0	0	0	0	0	0	0	12716	696	24	4		4	PRRT2	16	29824280	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	9260557	29824280	60530473	491	158261											
LPCAT2	54947	broad.mit.edu	37	chr16	55608521	55608521	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactagtggccctcctaattGatttatcccatcctttcaca	4	14	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55608521	A	A	55608521	1	1	198	0	1	0	0	0	0	0	0	0	8998	1305	45	4		4	LPCAT2	16	55608521	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	25784241	55608521	34746232	492	158262											
MT1M	4499	broad.mit.edu	37	chr16	56667670	56667670	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcttccccaggctgctgCtcctgctgccccgtgggctg	11	18	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56667670	T	T	56667670	2	4	198	1	0	0	0	0	0	0	0	1	9997	805	28	4		4	MT1M	16	56667670	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	1059149	56667670	33687083	493	158263											
PLLP	51090	broad.mit.edu	37	chr16	57290973	57290973	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagaagggcttaaggaccGagagggtgacagtgacacaa	16	6	0	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57290973	T	T	57290973	1	4	198	0	1	0	0	0	0	0	0	0	12194	1073	37	3		3	PLLP	16	57290973	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	623303	57290973	33063780	494	158264											
GPR97	222487	broad.mit.edu	37	chr16	57717902	57717902	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatccacgtggccctgggtGgcagcctgttcctcctgaat	12	13	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57717902	A	A	57717902	3	1	198	1	0	0	0	0	1	0	0	0	6786	1348	47	4	974	4	GPR97	16	57717902	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	426929	57717902	32636851	495	158265											
CNOT1	23019	broad.mit.edu	37	chr16	58582579	58582579	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttattgagcaaagaatgaCcacagctgtatgctggttct	10	7	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58582579	A	A	58582579	1	1	198	0	1	0	0	0	0	0	0	0	3649	522	18	3		3	CNOT1	16	58582579	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	864677	58582579	31772174	496	158266											
CNOT1	23019	broad.mit.edu	37	chr16	58582601	58582601	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagctgtatgctggttctaGaagtttttcctcctaagaaa	8	8	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58582601	C	C	58582601	1	2	198	0	1	0	0	0	0	0	0	0	3649	957	33	4		4	CNOT1	16	58582601	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	22	58582601	31772152	497	158267											
PKD1L2	114780	broad.mit.edu	37	chr16	81241089	81241089	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggctcagagatttctcTtacctcggcgggttgtaggg	13	9	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81241089	A	A	81241089	1	1	198	0	1	0	0	0	0	0	0	0	12060	1624	56	5		5	PKD1L2	16	81241089	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	22658488	81241089	9113664	498	158268											
CA5A	763	broad.mit.edu	37	chr16	87969917	87969917	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgaggctctacttacaaGtgttattgctggtttgccat	9	7	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87969917	T	T	87969917	3	4	198	1	0	0	0	0	1	0	0	0	2545	1029	36	3	805	3	CA5A	16	87969917	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	6728828	87969917	2384836	499	158269											
BANP	54971	broad.mit.edu	37	chr16	88110134	88110134	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcactggctgttcatgacAccccctggccatgcagtgct	10	14	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88110134	C	C	88110134	1	2	198	0	1	0	0	0	0	0	0	0	1315	174	6	5		5	BANP	16	88110134	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	140217	88110134	2244619	500	158270											
CTU2	348180	broad.mit.edu	37	chr16	88780888	88780888	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgccctggacgtcgacGccgctggtctgtgtttcatg	14	11	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88780888	C	C	88780888	3	2	198	1	0	0	0	0	1	0	0	0	4081	1087	38	4	1237	4	CTU2	16	88780888	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	670754	88780888	1573865	501	158271											
ABR	29	broad.mit.edu	37	chr17	960259	960259	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtctttattgctggtgacagGaatgttgtgtacagtcctaa	11	6	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	960259	C	C	960259	3	2	198	1	0	0	0	0	1	0	0	0	99	1174	41	4	1158	4	ABR	17	960259	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08		960259	80234951	502	158272											
PRPF8	10594	broad.mit.edu	37	chr17	1554851	1554851	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaagggttccatctcctaTaggtaaagaggagtacagag	11	8	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1554851	C	C	1554851	1	2	198	0	1	0	0	0	0	0	0	0	12681	1421	49	5		5	PRPF8	17	1554851	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	594592	1554851	79640359	503	158273											
TRPV3	162514	broad.mit.edu	37	chr17	3446925	3446925	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttggccagctgtgcactGaagccagaaaatgtttccaa	9	11	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3446925	T	T	3446925	1	4	198	0	1	0	0	0	0	0	0	0	16722	1305	45	3		3	TRPV3	17	3446925	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1892074	3446925	77748285	504	158274											
ZZEF1	23140	broad.mit.edu	37	chr17	3968180	3968180	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttaaaattatgggggagGgggaggggagagggatagca	20	1	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3968180	A	A	3968180	1	1	198	0	1	0	0	0	0	0	0	0	18384	1247	43	4		4	ZZEF1	17	3968180	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	521255	3968180	77227030	505	158275											
ANKFY1	51479	broad.mit.edu	37	chr17	4167249	4167249	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccgccatgtctggcccggcActgcctgcaacctcgcgaga	11	17	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4167249	C	C	4167249	1	2	198	0	1	0	0	0	0	0	0	0	626	174	6	5		5	ANKFY1	17	4167249	5'UTR	SNP	A	TCGA-67-4679-01B-01D-1753-08	199069	4167249	77027961	506	158276											
MED11	400569	broad.mit.edu	37	chr17	4635147	4635147	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggcggcggccttcaccgcTtcagtgcaacacgtggaggc	14	14	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4635147	G	G	4635147	2	3	198	1	0	0	0	0	0	0	0	1	9520	1596	56	5		5	MED11	17	4635147	Silent	SNP	T	TCGA-67-4679-01B-01D-1753-08	467898	4635147	76560063	507	158277											
USP6	9098	broad.mit.edu	37	chr17	5043224	5043224	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taacaatccaagcaggcttcGcatccttgttttattttttg	6	9	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5043224	C	C	5043224	1	2	198	0	1	0	0	0	0	0	0	0	17213	1102	38	4		4	USP6	17	5043224	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	408077	5043224	76151986	508	158278											
RPAIN	84268	broad.mit.edu	37	chr17	5329713	5329713	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacttggagcccattgtgcAtatttcttcccagttttatg	8	9	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5329713	G	G	5329713	1	3	198	0	1	0	0	0	0	0	0	0	13651	232	8	5		5	RPAIN	17	5329713	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	286489	5329713	75865497	509	158279											
CHRNB1	1140	broad.mit.edu	37	chr17	7358971	7358971	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaagttgcacaaggctagAgagatcactgctggagggaa	14	6	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7358971	G	G	7358971	1	3	198	0	1	0	0	0	0	0	0	0	3421	319	11	5		5	CHRNB1	17	7358971	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	2029258	7358971	73836239	510	158280											
DNAH2	146754	broad.mit.edu	37	chr17	7630539	7630539	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacactttgcccaggaccctAcagaatccatcctcaccatc	4	17	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7630539	T	T	7630539	3	4	198	1	0	0	0	0	1	0	0	0	4642	391	14	5	338	5	DNAH2	17	7630539	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	271568	7630539	73564671	511	158281											
DNAH2	146754	broad.mit.edu	37	chr17	7644081	7644081	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggatgagtgaccggagggaAcccgccttcccgggcacgtc	16	13	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7644081	G	G	7644081	1	3	198	0	1	0	0	0	0	0	0	0	4642	58	2	5		5	DNAH2	17	7644081	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	13542	7644081	73551129	512	158282											
C17orf68	80169	broad.mit.edu	37	chr17	8135176	8135176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgggatcctagccagaggCtcagggcgcaggtcaggtcc	16	12	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8135176	T	T	8135176	1	4	198	0	1	0	0	0	0	0	0	0	1892	812	28	4		4	C17orf68	17	8135176	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	491095	8135176	73060034	513	158283											
PIK3R6	146850	broad.mit.edu	37	chr17	8732356	8732356	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacgtgaggctggcagggcTacgtttctgatttcagccag	13	10	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8732356	A	A	8732356	1	1	198	0	1	0	0	0	0	0	0	0	12018	1537	53	5		5	PIK3R6	17	8732356	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	597180	8732356	72462854	514	158284											
MYH1	4619	broad.mit.edu	37	chr17	10401161	10401161	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagcctctgcttcgtcttctCaagggaagcacatttggcat	10	11	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10401161	A	A	10401161	4	1	198	1	0	0	0	0	0	1	0	0	10123	835	29	3	1604	3	MYH1	17	10401161	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1668805	10401161	70794049	515	158285											
MYH2	4620	broad.mit.edu	37	chr17	10429784	10429784	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgtcttattctcagggCctgattgtgactggcacata	9	9	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10429784	A	A	10429784	1	1	198	0	1	0	0	0	0	0	0	0	10129	754	26	3		3	MYH2	17	10429784	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	28623	10429784	70765426	516	158286											
MYH2	4620	broad.mit.edu	37	chr17	10432732	10432732	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccaacttcaagtcaccctCaagtttcctcttagcccttt	5	15	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10432732	G	G	10432732	3	3	198	1	0	0	0	0	1	0	0	0	10129	835	29	4	2705	4	MYH2	17	10432732	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	2948	10432732	70762478	517	158287											
MYH2	4620	broad.mit.edu	37	chr17	10450851	10450851	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcacagcaggctcatgcaGatgagtcatcatggccatat	10	11	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10450851	A	A	10450851	2	1	198	1	0	0	0	0	0	0	0	1	10129	933	33	4		4	MYH2	17	10450851	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	18119	10450851	70744359	518	158288											
DNAH9	1770	broad.mit.edu	37	chr17	11522839	11522839	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgtctgcacctgctcaGtgatactaatctgtttgtat	9	8	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11522839	A	A	11522839	1	1	198	0	1	0	0	0	0	0	0	0	4648	1044	36	4		4	DNAH9	17	11522839	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	1071988	11522839	69672371	519	158289											
EPN2	22905	broad.mit.edu	37	chr17	19216459	19216459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actacgctgttggatttaatGgatgctctccccagctcggg	11	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19216459	T	T	19216459	3	4	198	1	0	0	0	0	1	0	0	0	5228	1348	47	2	1032	2	EPN2	17	19216459	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	7693620	19216459	61978751	520	158290											
ALDH3A1	218	broad.mit.edu	37	chr17	19645887	19645887	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactgggggatgatggtagCcagcaggctcgccatgttct	15	9	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19645887	T	T	19645887	3	4	198	1	0	0	0	0	1	0	0	0	497	739	26	4	942	4	ALDH3A1	17	19645887	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	429428	19645887	61549323	521	158291											
MAP2K3	5606	broad.mit.edu	37	chr17	21201758	21201758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagaaggatctacggatatCctgcatgtccaagccacccg	10	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21201758	A	A	21201758	3	1	198	1	0	0	0	0	1	0	0	0	9330	855	30	3	89	3	MAP2K3	17	21201758	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1555871	21201758	59993452	522	158292											
PROCA1	147011	broad.mit.edu	37	chr17	27031584	27031584	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctccccatttctcttagaGcagagcaaggtgtgcagagc	10	12	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27031584	C	C	27031584	1	2	198	0	1	0	0	0	0	0	0	0	12652	986	34	4		4	PROCA1	17	27031584	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	5829826	27031584	54163626	523	158293											
ADAP2	55803	broad.mit.edu	37	chr17	29280311	29280311	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctcttccccagctcgtGccattcctcaccaggaacta	6	17	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29280311	T	T	29280311	2	4	198	1	0	0	0	0	0	0	0	1	280	1306	46	3		3	ADAP2	17	29280311	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	2248727	29280311	51914899	524	158294											
GPR179	440435	broad.mit.edu	37	chr17	36484370	36484370	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagcagtcaagttttcCtccacatccaaagggcaaat	6	13	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36484370	T	T	36484370	2	4	198	1	0	0	0	0	0	0	0	1	6739	680	24	4		4	GPR179	17	36484370	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	7204059	36484370	44710840	525	158295											
IKZF3	22806	broad.mit.edu	37	chr17	37992304	37992304	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggctctacttggtctcCagcatcttgttctgctgctt	10	11	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37992304	A	A	37992304	1	1	198	0	1	0	0	0	0	0	0	0	7686	609	21	2		2	IKZF3	17	37992304	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1507934	37992304	43202906	526	158296											
JUP	3728	broad.mit.edu	37	chr17	39778054	39778054	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctggacccatcctgacCtctcactcccaagccttccc	5	20	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39778054	A	A	39778054	1	1	198	0	1	0	0	0	0	0	0	0	8042	696	24	2		2	JUP	17	39778054	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1785750	39778054	41417156	527	158297											
C17orf53	78995	broad.mit.edu	37	chr17	42235288	42235288	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagaggcagaggcgtcccctGaggaagaactcccagaagca	13	11	0	5			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42235288	T	T	42235288	4	4	198	1	0	0	0	0	0	1	0	0	1878	1291	45	3	1895	3	C17orf53	17	42235288	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2457234	42235288	38959922	528	158298											
ITGA2B	3674	broad.mit.edu	37	chr17	42457567	42457567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctccctggccagcctccGggggagtccaagcccacctc	11	19	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42457567	T	T	42457567	1	4	198	0	1	0	0	0	0	0	0	0	7946	1131	39	1		1	ITGA2B	17	42457567	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	222279	42457567	38737643	529	158299											
GJC1	10052	broad.mit.edu	37	chr17	42882827	42882827	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcccggtgttgtttccagCgcattgcatagggcttgctc	13	11	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42882827	T	T	42882827	3	4	198	1	0	0	0	0	1	0	0	0	6478	768	27	4	835	4	GJC1	17	42882827	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	425260	42882827	38312383	530	158300											
PLEKHM1	9842	broad.mit.edu	37	chr17	43545987	43545987	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttaaacaaagaaacctgtGtgacaggttgtctgcgataa	9	6	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43545987	A	A	43545987	1	1	198	0	1	0	0	0	0	0	0	0	12175	1392	48	4		4	PLEKHM1	17	43545987	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	663160	43545987	37649223	531	158301											
HOXB1	3211	broad.mit.edu	37	chr17	46606940	46606940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagctgggtgaggcttccGgggaggtgcatgtcgactgg	19	8	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46606940	T	T	46606940	3	4	198	1	0	0	0	0	1	0	0	0	7366	1116	39	1	34	1	HOXB1	17	46606940	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3060953	46606940	34588270	532	158302											
HOXB3	3213	broad.mit.edu	37	chr17	46627701	46627701	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcgccctttcccatcacaGgtgtgttaatttgggcgctt	10	11	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46627701	T	T	46627701	3	4	198	1	0	0	0	0	1	0	0	0	7369	991	35	2	8	2	HOXB3	17	46627701	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	20761	46627701	34567509	533	158303											
CALCOCO2	10241	broad.mit.edu	37	chr17	46928546	46928546	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagctgcttcagtgagtGcatcccataattctgggagg	12	9	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46928546	T	T	46928546	1	4	198	0	1	0	0	0	0	0	0	0	2604	1334	46	3		3	CALCOCO2	17	46928546	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	300845	46928546	34266664	534	158304											
CA10	56934	broad.mit.edu	37	chr17	49708979	49708979	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcatttactgcaaagagaGagaaagaaaaaaaaaatcac	6	5	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49708979	T	T	49708979	1	4	198	0	1	0	0	0	0	0	0	0	2537	957	33	3		3	CA10	17	49708979	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	2780433	49708979	31486231	535	158305											
KIF2B	84643	broad.mit.edu	37	chr17	51902457	51902457	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgaaatgctgcattgctGcagtttccaccactcttata	7	12	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51902457	T	T	51902457	1	4	198	0	1	0	0	0	0	0	0	0	8368	1334	46	3		3	KIF2B	17	51902457	3'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	2193478	51902457	29292753	536	158306											
APPBP2	10513	broad.mit.edu	37	chr17	58525167	58525167	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgataatcatattctagtccActgtagccctcaccaaaaag	5	12	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58525167	C	C	58525167	3	2	198	1	0	0	0	0	1	0	0	0	818	156	6	5	228	5	APPBP2	17	58525167	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	6622710	58525167	22670043	537	158307											
RGS9	8787	broad.mit.edu	37	chr17	63157040	63157040	+	Intron	DEL	T	-	-													atgaaaaggtatggaggtgcTtttaagtagaggttgttata							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63157040	-	-	63157040	6	5	198	0	1	1	0	1	0	0	0	0	13422	1624	56	0		0	RGS9	17	63157040	Intron	DEL	T	TCGA-67-4679-01B-01D-1753-08	4631873	63157040	18038170	538	158308											
ABCA8	10351	broad.mit.edu	37	chr17	66933232	66933232	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctttaatactttcctcaTctggcagtcccaagacctct	4	13	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66933232	A	A	66933232	3	1	198	1	0	0	0	0	1	0	0	0	38	1435	50	5	4559	5	ABCA8	17	66933232	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	3776192	66933232	14261978	539	158309											
P4HB	5034	broad.mit.edu	37	chr17	79805012	79805012	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgcagaagattctcccaAtggcctccaatgtcagacgc	8	12	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79805012	G	G	79805012	1	3	198	0	1	0	0	0	0	0	0	0	11453	116	4	5		5	P4HB	17	79805012	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	12871780	79805012	1390198	540	158310											
CETN1	1068	broad.mit.edu	37	chr18	580598	580598	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagagcgctgggcttcgaaCccaggaaggaagagatgaag	16	7	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	580598	A	A	580598	3	1	198	1	0	0	0	0	1	0	0	0	3304	507	18	3	192	3	CETN1	18	580598	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08		580598	77496650	541	158311											
LAMA1	284217	broad.mit.edu	37	chr18	7050841	7050841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcataatactgccaggggCtgaacgtggtgccatccaga	12	11	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7050841	A	A	7050841	3	1	198	1	0	0	0	0	1	0	0	0	8677	797	28	3	9027	3	LAMA1	18	7050841	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	6470243	7050841	71026407	542	158312											
ANKRD30B	374860	broad.mit.edu	37	chr18	14763832	14763832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcaatgtctggggaaagCaacatctggaaagtttgaac	10	6	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14763832	A	A	14763832	3	1	198	1	0	0	0	0	1	0	0	0	659	710	25	3	994	3	ANKRD30B	18	14763832	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	7712991	14763832	63313416	543	158313											
ANKRD30B	374860	broad.mit.edu	37	chr18	14799003	14799003	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcccttttcaatccaagcAtcatgaggattcgtcttcat	5	11	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14799003	T	T	14799003	1	4	198	0	1	0	0	0	0	0	0	0	659	232	8	5		5	ANKRD30B	18	14799003	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	35171	14799003	63278245	544	158314											
DSC3	1825	broad.mit.edu	37	chr18	28609517	28609517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccaaggaattctcttgCatagagcaaggaataggtgc	13	8	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28609517	A	A	28609517	3	1	198	1	0	0	0	0	1	0	0	0	4807	710	25	3	2341	3	DSC3	18	28609517	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	13810514	28609517	49467731	545	158315											
DSC2	1824	broad.mit.edu	37	chr18	28650880	28650880	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaagttataaatgtacaaTggttaatacacacataaatc	5	5	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28650880	C	C	28650880	1	2	198	0	1	0	0	0	0	0	0	0	4806	1479	51	5		5	DSC2	18	28650880	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	41363	28650880	49426368	546	158316											
DSC1	1823	broad.mit.edu	37	chr18	28711658	28711658	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggactccaaggtctgatgtcCacctcctttgttggaatcca	9	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28711658	G	G	28711658	3	3	198	1	0	0	0	0	1	0	0	0	4805	603	21	4	346	4	DSC1	18	28711658	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	60778	28711658	49365590	547	158317											
DSG4	147409	broad.mit.edu	37	chr18	28983407	28983407	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaacagctacaggaacCatatgtattgaggttcctga	10	7	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28983407	T	T	28983407	2	4	198	1	0	0	0	0	0	0	0	1	4819	581	21	4		4	DSG4	18	28983407	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	271749	28983407	49093841	548	158318											
DTNA	1837	broad.mit.edu	37	chr18	32336058	32336058	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtttccattgaatactcaTggaaaggctagaaataacca	7	7	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32336058	C	C	32336058	1	2	198	0	1	0	0	0	0	0	0	0	4828	1479	51	5		5	DTNA	18	32336058	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	3352651	32336058	45741190	549	158319											
RPL17	6139	broad.mit.edu	37	chr18	47017306	47017306	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcacgagtgttctaagtatGaagaataaagtgttggttaa	10	3	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47017306	A	A	47017306	1	1	198	0	1	0	0	0	0	0	0	0	13674	1305	45	4		4	RPL17	18	47017306	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	14681248	47017306	31059942	550	158320											
WDR7	23335	broad.mit.edu	37	chr18	54398639	54398639	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggatcgttgtgtgatgggGataacagcagttgagattct	14	4	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54398639	T	T	54398639	2	4	198	1	0	0	0	0	0	0	0	1	17447	1161	41	3		3	WDR7	18	54398639	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	7381333	54398639	23678609	551	158321											
CDH20	28316	broad.mit.edu	37	chr18	59157856	59157856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtccttgtacttctggGggctgatggaccttacgacc	12	11	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59157856	T	T	59157856	3	4	198	1	0	0	0	0	1	0	0	0	3136	1232	43	2	72	2	CDH20	18	59157856	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4759217	59157856	18919392	552	158322											
SERPINB8	5271	broad.mit.edu	37	chr18	61654208	61654208	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttcccagattaaagctggAggagagttatgacttggagc	12	8	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61654208	T	T	61654208	3	4	198	1	0	0	0	0	1	0	0	0	14220	304	11	5	856	5	SERPINB8	18	61654208	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	2496352	61654208	16423040	553	158323											
CBLN2	147381	broad.mit.edu	37	chr18	70209031	70209031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcggggtgggcaggccgaCggctgacctggtcgaaatag	20	9	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70209031	A	A	70209031	1	1	198	0	1	0	0	0	0	0	0	0	2731	551	19	3		3	CBLN2	18	70209031	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	8554823	70209031	7868217	554	158324											
CNDP2	55748	broad.mit.edu	37	chr18	72183517	72183517	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctgtccctccatggcatcGaaggcgccttctctgggtct	10	15	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72183517	T	T	72183517	4	4	198	1	0	0	0	0	0	1	0	0	3626	1059	37	3	988	3	CNDP2	18	72183517	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1974486	72183517	5893731	555	158325											
GALR1	2587	broad.mit.edu	37	chr18	74980680	74980680	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaatcaccgcccactgccTggcgtacagcaattcctccg	8	17	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74980680	A	A	74980680	3	1	198	1	0	0	0	0	1	0	0	0	6289	1580	55	5	882	5	GALR1	18	74980680	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	2797163	74980680	3096568	556	158326											
BSG	682	broad.mit.edu	37	chr19	581244	581244	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagactgggggtcccggacTcagccctcaggactgggtga	15	12	2	2	rs112971000	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	581244	C	C	581244	1	2	198	0	1	0	0	0	0	0	0	0	1538	1566	54	5		5	BSG	19	581244	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08		581244	58547739	557	158327											
C19orf21	126353	broad.mit.edu	37	chr19	763550	763550	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagaacgccatggcagagcGctgggaatcccgcatctacg	12	13	1	2	rs143887834	byFrequency	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	763550	C	C	763550	3	2	198	1	0	0	0	0	1	0	0	0	1932	1087	38	4	2014	4	C19orf21	19	763550	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	182306	763550	58365433	558	158328											
CSNK1G2	1455	broad.mit.edu	37	chr19	1969972	1969972	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcctaggtgaggccctgctCggtggtaggtggggtcggga	20	9	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1969972	T	T	1969972	1	4	198	0	1	0	0	0	0	0	0	0	3989	899	31	4		4	CSNK1G2	19	1969972	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1206422	1969972	57159011	559	158329											
AP3D1	8943	broad.mit.edu	37	chr19	2112986	2112986	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagggagccagggcttGgggctcatgctgggcaatga	17	10	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2112986	A	A	2112986	1	1	198	0	1	0	0	0	0	0	0	0	748	1363	47	4		4	AP3D1	19	2112986	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	143014	2112986	57015997	560	158330											
ATCAY	85300	broad.mit.edu	37	chr19	3907716	3907716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcgtccatgcgactctcCgccacctgcttctagacgac	9	17	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3907716	A	A	3907716	1	1	198	0	1	0	0	0	0	0	0	0	1081	667	23	1		1	ATCAY	19	3907716	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1794730	3907716	55221267	561	158331											
FSD1	79187	broad.mit.edu	37	chr19	4318975	4318975	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggggagaagaaaggggagAggggagttttgggcaggggc	23	2	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4318975	T	T	4318975	1	4	198	0	1	0	0	0	0	0	0	0	6130	319	11	5		5	FSD1	19	4318975	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	411259	4318975	54810008	562	158332											
PLIN4	729359	broad.mit.edu	37	chr19	4504673	4504673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcacagaggctgtgccgcGcccgccccactggctgctgg	14	17	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4504673	T	T	4504673	3	4	198	1	0	0	0	0	1	0	0	0	12187	1087	38	3	205	3	PLIN4	19	4504673	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	185698	4504673	54624310	563	158333											
SEMA6B	10501	broad.mit.edu	37	chr19	4555447	4555447	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatgccaggtcttgcctgtGgctggggctgatcagatgga	15	8	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4555447	C	C	4555447	1	2	198	0	1	0	0	0	0	0	0	0	14153	1363	47	4		4	SEMA6B	19	4555447	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	50774	4555447	54573536	564	158334											
TUBB4	10382	broad.mit.edu	37	chr19	6501382	6501382	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggttccaggtccaccaGcaccgctctggggacataat	12	14	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6501382	T	T	6501382	3	4	198	1	0	0	0	0	1	0	0	0	16884	962	34	3	1149	3	TUBB4	19	6501382	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1945935	6501382	52627601	565	158335											
OR2Z1	284383	broad.mit.edu	37	chr19	8841487	8841487	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttctccctggtggctGtcatgtttgtcataggcctt	9	12	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8841487	C	C	8841487	3	2	198	1	0	0	0	0	1	0	0	0	11130	1377	48	4	99	4	OR2Z1	19	8841487	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	2340105	8841487	50287496	566	158336											
MUC16	94025	broad.mit.edu	37	chr19	9009593	9009593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggcactaaccagacCctgcaggaccctctctgtgg	13	14	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9009593	A	A	9009593	3	1	198	1	0	0	0	0	1	0	0	0	10067	623	22	2	4574	2	MUC16	19	9009593	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	168106	9009593	50119390	567	158337											
MUC16	94025	broad.mit.edu	37	chr19	9073672	9073672	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaggatgttggctctccctCaatgtctgtggtctcagaac	12	10	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9073672	T	T	9073672	3	4	198	1	0	0	0	0	1	0	0	0	10067	835	29	4	30077	4	MUC16	19	9073672	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	64079	9073672	50055311	568	158338											
MUC16	94025	broad.mit.edu	37	chr19	9089924	9089924	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatgtctcagatgatgctgTggctctggtgagtaggtggg	18	5	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9089924	A	A	9089924	3	1	198	1	0	0	0	0	1	0	0	0	10067	1696	59	5	41968	5	MUC16	19	9089924	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	16252	9089924	50039059	569	158339											
ZNF266	10781	broad.mit.edu	37	chr19	9525173	9525173	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acgttctctggcaaacaacaTctgggttcaggctgaaggct	11	10	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9525173	A	A	9525173	3	1	198	1	0	0	0	0	1	0	0	0	17931	1435	50	5	1225	5	ZNF266	19	9525173	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	435249	9525173	49603810	570	158340											
ZNF560	147741	broad.mit.edu	37	chr19	9578057	9578057	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagaagaggtaaatggtttCccacatttgtaacacttaaa	8	7	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9578057	T	T	9578057	2	4	198	1	0	0	0	0	0	0	0	1	18118	842	30	4		4	ZNF560	19	9578057	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	52884	9578057	49550926	571	158341											
COL5A3	50509	broad.mit.edu	37	chr19	10096331	10096331	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcaagcaatcctctcacCtcagcctctcagggtgctgg	10	15	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10096331	T	T	10096331	1	4	198	0	1	0	0	0	0	0	0	0	3730	696	24	4		4	COL5A3	19	10096331	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	518274	10096331	49032652	572	158342											
ZNF823	55552	broad.mit.edu	37	chr19	11833620	11833620	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattcatacgctttctctccCgtgtggattctttcatgtct	6	12	5	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11833620	G	G	11833620	2	3	198	1	0	0	0	0	0	0	0	1	18308	639	23	4		4	ZNF823	19	11833620	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	1737289	11833620	47295363	573	158343											
TNPO2	30000	broad.mit.edu	37	chr19	12821473	12821473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaccaggatgcccgactccTtgaccacccactcggggtgg	12	16	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12821473	A	A	12821473	3	1	198	1	0	0	0	0	1	0	0	0	16459	1609	56	5	1513	5	TNPO2	19	12821473	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	987853	12821473	46307510	574	158344											
CACNA1A	773	broad.mit.edu	37	chr19	13563669	13563669	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagctagttaaatccaaagCgtatagcacgcgccacttac	7	12	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13563669	G	G	13563669	1	3	198	0	1	0	0	0	0	0	0	0	2564	783	27	4		4	CACNA1A	19	13563669	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	742196	13563669	45565314	575	158345											
ANKLE1	126549	broad.mit.edu	37	chr19	17396645	17396645	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtgggtgcctggtaccTagaatgggggtcatatgaaa	15	6	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17396645	A	A	17396645	1	1	198	0	1	0	0	0	0	0	0	0	632	1537	53	5		5	ANKLE1	19	17396645	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	3832976	17396645	41732338	576	158346											
FCHO1	23149	broad.mit.edu	37	chr19	17895735	17895735	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagccggctgccacctggTgagggcttgcgggaggccaa	17	12	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17895735	A	A	17895735	5	1	198	1	0	0	0	0	0	0	1	0	5844	1710	59	5	2518	5	FCHO1	19	17895735	Splice_Site	SNP	T	TCGA-67-4679-01B-01D-1753-08	499090	17895735	41233248	577	158347											
PBX4	80714	broad.mit.edu	37	chr19	19681572	19681572	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacacgccctcagccagCagcatgttatccagcctcag	8	17	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19681572	G	G	19681572	2	3	198	1	0	0	0	0	0	0	0	1	11589	697	25	4		4	PBX4	19	19681572	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	1785837	19681572	39447411	578	158348											
ZNF493	284443	broad.mit.edu	37	chr19	21606023	21606023	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaaatgtaaaaaatgtGgcaaatcattttgcatgctt	6	6	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21606023	T	T	21606023	3	4	198	1	0	0	0	0	1	0	0	0	18071	1348	47	2	639	2	ZNF493	19	21606023	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	1924451	21606023	37522960	579	158349											
ZNF91	7644	broad.mit.edu	37	chr19	23543380	23543380	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagctttgccacattcttCacatttgtagggcttctctc	6	11	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23543380	A	A	23543380	4	1	198	1	0	0	0	0	0	1	0	0	18329	835	29	3	1178	3	ZNF91	19	23543380	Nonsense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1937357	23543380	35585603	580	158350											
FFAR2	2867	broad.mit.edu	37	chr19	35940868	35940868	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccaaggtcgtctgcgccctCacgagttttggcttctacag	10	14	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35940868	A	A	35940868	2	1	198	1	0	0	0	0	0	0	0	1	5885	813	29	3		3	FFAR2	19	35940868	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	12397488	35940868	23188115	581	158351											
NPHS1	4868	broad.mit.edu	37	chr19	36332708	36332708	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatcctgggcggcagacacGttggcaatggtcaggaggct	15	9	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36332708	A	A	36332708	2	1	198	1	0	0	0	0	0	0	0	1	10677	1136	40	4		4	NPHS1	19	36332708	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	391840	36332708	22796275	582	158352											
CYP2F1	1572	broad.mit.edu	37	chr19	41626230	41626230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagttcccggttaagctGgtcccctcctcttctcccca	8	16	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41626230	T	T	41626230	1	4	198	0	1	0	0	0	0	0	0	0	4204	1363	47	2		2	CYP2F1	19	41626230	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	5293522	41626230	17502753	583	158353											
PSG3	5671	broad.mit.edu	37	chr19	43228105	43228105	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcatcatacctgccagtcttCctgaaatacagaaatgacat	5	11	3	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43228105	T	T	43228105	1	4	198	0	1	0	0	0	0	0	0	0	12762	870	30	4		4	PSG3	19	43228105	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	1601875	43228105	15900878	584	158354											
PSG8	440533	broad.mit.edu	37	chr19	43282763	43282763	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgtccacctccagcttatAgggcttctggaacagaatgg	11	10	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43282763	T	T	43282763	1	4	198	0	1	0	0	0	0	0	0	0	12767	435	15	5		5	PSG8	19	43282763	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	54658	43282763	15846220	585	158355											
PSG6	5675	broad.mit.edu	37	chr19	43411928	43411928	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagttccgactcttaggtTcacaggtgaaggctaacaca	10	9	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43411928	A	A	43411928	3	1	198	1	0	0	0	0	1	0	0	0	12765	1783	62	5	573	5	PSG6	19	43411928	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	129165	43411928	15717055	586	158356											
PSG4	5672	broad.mit.edu	37	chr19	43698283	43698283	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatgtttctcctgcttggtCtaggctgggaattttaagaa	10	7	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43698283	A	A	43698283	1	1	198	0	1	0	0	0	0	0	0	0	12763	928	32	3		3	PSG4	19	43698283	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	286355	43698283	15430700	587	158357											
ZNF229	7772	broad.mit.edu	37	chr19	44932853	44932853	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgtgcaacctctggtgGgtgcgaagattagagccata	13	9	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44932853	T	T	44932853	2	4	198	1	0	0	0	0	0	0	0	1	17908	1219	43	2		2	ZNF229	19	44932853	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	1234570	44932853	14196130	588	158358											
PVRL2	5819	broad.mit.edu	37	chr19	45389062	45389062	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcatggaatgaataaaaaCtcttactccaggcaagaaaa	6	7	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45389062	T	T	45389062	1	4	198	0	1	0	0	0	0	0	0	0	12948	580	20	4		4	PVRL2	19	45389062	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	456209	45389062	13739921	589	158359											
SULT2A1	6822	broad.mit.edu	37	chr19	48374858	48374858	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaactcaggtcagaccAcacatctccttgacctgtct	7	14	4	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48374858	G	G	48374858	1	3	198	0	1	0	0	0	0	0	0	0	15499	174	6	5		5	SULT2A1	19	48374858	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	2985796	48374858	10754125	590	158360											
SULT2A1	6822	broad.mit.edu	37	chr19	48382293	48382293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaaaatgatgggattacCtgtttcagctcctcataact	6	9	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48382293	A	A	48382293	3	1	198	1	0	0	0	0	1	0	0	0	15499	695	24	2	302	2	SULT2A1	19	48382293	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	7435	48382293	10746690	591	158361											
NAPSA	9476	broad.mit.edu	37	chr19	50862784	50862784	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccagcaaggggattccCccaatggctgcatgcagggc	13	14	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50862784	A	A	50862784	2	1	198	1	0	0	0	0	0	0	0	1	10260	610	22	2		2	NAPSA	19	50862784	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	2480491	50862784	8266199	592	158362											
FPR1	2357	broad.mit.edu	37	chr19	52249723	52249723	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgaaaagttaaaagtgcaGgctactgtccccgttttacc	10	10	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52249723	T	T	52249723	2	4	198	1	0	0	0	0	0	0	0	1	6098	987	35	2		2	FPR1	19	52249723	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	1386939	52249723	6879260	593	158363											
LILRA5	353514	broad.mit.edu	37	chr19	54823730	54823730	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaaaaccctggagtttccTgatagacaagggcctcgtta	9	11	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54823730	A	A	54823730	1	1	198	0	1	0	0	0	0	0	0	0	8860	1595	55	5		5	LILRA5	19	54823730	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	2574007	54823730	4305253	594	158364											
LILRA1	11024	broad.mit.edu	37	chr19	55110786	55110786	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttgccgtgatgacgctggGcacagagggtcaggtcctgt	16	10	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55110786	T	T	55110786	1	4	198	0	1	0	0	0	0	0	0	0	8856	1218	42	3		3	LILRA1	19	55110786	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	287056	55110786	4018197	595	158365											
NLRP2	55655	broad.mit.edu	37	chr19	55489206	55489206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaggtgggtgtcaggacCtccaatgttggagtcagctg	14	9	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55489206	A	A	55489206	1	1	198	0	1	0	0	0	0	0	0	0	10572	696	24	2		2	NLRP2	19	55489206	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	378420	55489206	3639777	596	158366											
ZNF470	388566	broad.mit.edu	37	chr19	57081645	57081645	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcactacttctttttctccCcagctctacaatcccagagt	3	16	4	1	rs117078524	by1000genomes	TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57081645	T	T	57081645	1	4	198	0	1	0	0	0	0	0	0	0	18056	638	22	4		4	ZNF470	19	57081645	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1592439	57081645	2047338	597	158367											
ZSCAN1	284312	broad.mit.edu	37	chr19	58563859	58563859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgcttgccattctaggCgtctgagctgattctggatg	12	10	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58563859	A	A	58563859	3	1	198	1	0	0	0	0	1	0	0	0	18355	782	27	3	477	3	ZSCAN1	19	58563859	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	1482214	58563859	565124	598	158368											
PDYN	5173	broad.mit.edu	37	chr20	1961379	1961380	+	Nonsense_Mutation	DNP	CC	AA	AA													gctcttgctcagagtgttctCctttgttgagatacttggga							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	1961380	AA	AA	1961379	4	1	198	1	0	0	0	0	0	1	0	0	11793	864	30	3	413	3	PDYN	20	1961379	Nonsense_Mutation	DNP	CC	TCGA-67-4679-01B-01D-1753-08		1961379	61064141	599	158369											
KIF16B	55614	broad.mit.edu	37	chr20	16316677	16316677	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatctattaaccaggaaaaCcaaaatgaataagcattaag	5	6	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16316677	T	T	16316677	1	4	198	0	1	0	0	0	0	0	0	0	8348	522	18	4		4	KIF16B	20	16316677	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	14355298	16316677	46708843	600	158370											
CST9L	128821	broad.mit.edu	37	chr20	23546602	23546602	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagggaagctggtgtcCtgtcttacattgttcagctc	12	10	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23546602	A	A	23546602	1	1	198	0	1	0	0	0	0	0	0	0	4014	696	24	2		2	CST9L	20	23546602	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	7229925	23546602	39478918	601	158371											
COX4I2	84701	broad.mit.edu	37	chr20	30232741	30232741	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctccctgaggctccgcCctggctgggagcctctggcg	14	16	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30232741	A	A	30232741	1	1	198	0	1	0	0	0	0	0	0	0	3802	638	22	2		2	COX4I2	20	30232741	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	6686139	30232741	32792779	602	158372											
SUN5	140732	broad.mit.edu	37	chr20	31573082	31573082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagacttgcacactcccCaggatgggagctcactacct	11	13	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31573082	A	A	31573082	1	1	198	0	1	0	0	0	0	0	0	0	15512	609	21	2		2	SUN5	20	31573082	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1340341	31573082	31452438	603	158373											
BPIL1	80341	broad.mit.edu	37	chr20	31604730	31604730	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggaggaagggattccaGgcatggtgtatgggttgggg	22	3	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31604730	T	T	31604730	1	4	198	0	1	0	0	0	0	0	0	0	1500	1015	35	2		2	BPIL1	20	31604730	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	31648	31604730	31420790	604	158374											
BPIL1	80341	broad.mit.edu	37	chr20	31606945	31606945	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatgtttctgatcattcCagggactgagacaagggact	13	7	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31606945	G	G	31606945	1	3	198	0	1	0	0	0	0	0	0	0	1500	609	21	4		4	BPIL1	20	31606945	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	2215	31606945	31418575	605	158375											
C20orf114	92747	broad.mit.edu	37	chr20	31893790	31893790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaccagggtgacagtgcCccttctctctctcacagcct	7	17	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31893790	A	A	31893790	1	1	198	0	1	0	0	0	0	0	0	0	2104	638	22	2		2	C20orf114	20	31893790	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	286845	31893790	31131730	606	158376											
E2F1	1869	broad.mit.edu	37	chr20	32267746	32267746	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggtcagattcagtgaggtCtcatagcgtgacttctcccc	11	11	4	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32267746	A	A	32267746	3	1	198	1	0	0	0	0	1	0	0	0	4906	912	32	3	946	3	E2F1	20	32267746	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	373956	32267746	30757774	607	158377											
PXMP4	11264	broad.mit.edu	37	chr20	32295577	32295577	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcgtgccatacattgctgtCctcatagaggtaggtcatgg	12	9	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32295577	A	A	32295577	3	1	198	1	0	0	0	0	1	0	0	0	12959	855	30	3	68	3	PXMP4	20	32295577	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	27831	32295577	30729943	608	158378											
CEP250	11190	broad.mit.edu	37	chr20	34092055	34092056	+	Missense_Mutation	DNP	GG	TT	TT													ggcagaaagtcagtcctcccGgcatcaggaggaggctgccc							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	34092056	TT	TT	34092055	3	4	198	1	0	0	0	0	1	0	0	0	3282	1116	39	1	5964	1	CEP250	20	34092055	Missense_Mutation	DNP	GG	TCGA-67-4679-01B-01D-1753-08	1796478	34092055	28933465	609	158379											
FAM83D	81610	broad.mit.edu	37	chr20	37580963	37580963	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccccacctggaactgtacTtgagtgactcacttagaaac	7	14	1	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37580963	C	C	37580963	2	2	198	1	0	0	0	0	0	0	0	1	5689	1606	56	5		5	FAM83D	20	37580963	Silent	SNP	T	TCGA-67-4679-01B-01D-1753-08	3488908	37580963	25444557	610	158380											
PTPRT	11122	broad.mit.edu	37	chr20	40944583	40944583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcactcaataatgtcaGctgccctccgtgacttctga	7	12	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40944583	T	T	40944583	3	4	198	1	0	0	0	0	1	0	0	0	12920	971	34	3	2547	3	PTPRT	20	40944583	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3363620	40944583	22080937	611	158381											
PTPRT	11122	broad.mit.edu	37	chr20	41306789	41306789	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctctgggggagcaatgggCgtgggaggctctgtaagaca	18	7	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41306789	T	T	41306789	2	4	198	1	0	0	0	0	0	0	0	1	12920	755	27	4		4	PTPRT	20	41306789	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	362206	41306789	21718731	612	158382											
CTSA	5476	broad.mit.edu	37	chr20	44526386	44526386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctattatataatggagatGtagacatggcctgcaatttc	8	7	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44526386	A	A	44526386	3	1	198	1	0	0	0	0	1	0	0	0	4063	1377	48	4	1299	4	CTSA	20	44526386	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3219597	44526386	18499134	613	158383											
DOK5	55816	broad.mit.edu	37	chr20	53266922	53266922	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgggctttcttgaaatgTaactgttgattttaaattct	8	4	2	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53266922	G	G	53266922	1	3	198	0	1	0	0	0	0	0	0	0	4740	1653	57	5		5	DOK5	20	53266922	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	8740536	53266922	9758598	614	158384											
GNAS	2778	broad.mit.edu	37	chr20	57485035	57485035	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatctctgtgatcctgtTcctcaacaagcaagatctgc	6	14	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57485035	C	C	57485035	3	2	198	1	0	0	0	0	1	0	0	0	6574	1783	62	5	3728	5	GNAS	20	57485035	Missense_Mutation	SNP	T	TCGA-67-4679-01B-01D-1753-08	4218113	57485035	5540485	615	158385											
ZNF831	128611	broad.mit.edu	37	chr20	57767353	57767353	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatgcccagctggacaacGtgcggccccggaagaccggg	15	14	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57767353	T	T	57767353	3	4	198	1	0	0	0	0	1	0	0	0	18314	1145	40	3	1281	3	ZNF831	20	57767353	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	282318	57767353	5258167	616	158386											
ZNF831	128611	broad.mit.edu	37	chr20	57767489	57767489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccccgggccccgtgcgctCcacctggacgcccccagaca	12	21	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57767489	A	A	57767489	3	1	198	1	0	0	0	0	1	0	0	0	18314	855	30	3	1417	3	ZNF831	20	57767489	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	136	57767489	5258031	617	158387											
CHRNA4	1137	broad.mit.edu	37	chr20	61980997	61980997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccaacacagccatgggcgGgacttaccgagaagtctgtg	13	12	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61980997	T	T	61980997	1	4	198	0	1	0	0	0	0	0	0	0	3416	1247	43	2		2	CHRNA4	20	61980997	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	4213508	61980997	1044523	618	158388											
ZNF512B	57473	broad.mit.edu	37	chr20	62593643	62593643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtcgttgggacagttgaCgtggcctttctccttcactt	10	12	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62593643	A	A	62593643	3	1	198	1	0	0	0	0	1	0	0	0	18084	536	19	3	446	3	ZNF512B	20	62593643	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	612646	62593643	431877	619	158389											
BAGE2	85319	broad.mit.edu	37	chr21	11038727	11038727	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatcattaaaatcaccctaCctgtttggaccgaggtctac	6	11	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11038727	A	A	11038727	5	1	198	1	0	0	0	0	0	0	1	0	1297	521	18	3		3	BAGE2	21	11038727	Splice_Site	SNP	C	TCGA-67-4679-01B-01D-1753-08		11038727	37091168	620	158390											
BAGE2	85319	broad.mit.edu	37	chr21	11039277	11039277	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagttgctcttgctgcaCagtgatctggtgtgtaacga	12	9	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11039277	A	A	11039277	1	1	198	0	1	0	0	0	0	0	0	0	1297	493	17	3		3	BAGE2	21	11039277	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08	550	11039277	37090618	621	158391											
SFRS15	57466	broad.mit.edu	37	chr21	33069074	33069074	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagcaacttctggaataatTatgtcaatatttcattttaa	4	6	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33069074	A	A	33069074	1	1	198	0	1	0	0	0	0	0	0	0	14284	1769	61	5		5	SFRS15	21	33069074	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	22029797	33069074	15060821	622	158392											
C21orf45	54069	broad.mit.edu	37	chr21	33642890	33642890	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgaagcagcaactcattaTaataaaaatctcactgttaa	4	8	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33642890	G	G	33642890	1	3	198	0	1	0	0	0	0	0	0	0	2148	1421	49	5		5	C21orf45	21	33642890	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	573816	33642890	14487005	623	158393											
ITGB2	3689	broad.mit.edu	37	chr21	46320171	46320171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaggtggagaccccacCcttgtctcctccgtcagtgg	11	15	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46320171	A	A	46320171	1	1	198	0	1	0	0	0	0	0	0	0	7964	638	22	2		2	ITGB2	21	46320171	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	12677281	46320171	1809724	624	158394											
FTCD	10841	broad.mit.edu	37	chr21	47556845	47556845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccgaggtcacagctctgCcctctggggatgggcgaggg	16	13	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47556845	A	A	47556845	1	1	198	0	1	0	0	0	0	0	0	0	6141	754	26	3		3	FTCD	21	47556845	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	1236674	47556845	573050	625	158395											
ADRBK2	157	broad.mit.edu	37	chr22	26118422	26118422	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcaacggcctctagcaccCagaaacagggagggtcctcg	12	14	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26118422	T	T	26118422	1	4	198	0	1	0	0	0	0	0	0	0	344	609	21	4		4	ADRBK2	22	26118422	3'UTR	SNP	C	TCGA-67-4679-01B-01D-1753-08		26118422	25186144	626	158396											
CRYBB1	1414	broad.mit.edu	37	chr22	27003955	27003955	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggatgaacatctccccGcggaagttggactgctcaaa	10	12	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27003955	T	T	27003955	2	4	198	1	0	0	0	0	0	0	0	1	3942	1074	38	3		3	CRYBB1	22	27003955	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	885533	27003955	24300611	627	158397											
SF3A1	10291	broad.mit.edu	37	chr22	30742488	30742488	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcgttctgtcggatcctaGcttcaaattcaggcccgttt	8	12	4	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30742488	C	C	30742488	3	2	198	1	0	0	0	0	1	0	0	0	14259	971	34	4	2231	4	SF3A1	22	30742488	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	3738533	30742488	20562078	628	158398											
C22orf42	150297	broad.mit.edu	37	chr22	32554966	32554966	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatggcacccatggcttcTttacctttggacatcttcag	7	12	3	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32554966	A	A	32554966	1	1	198	0	1	0	0	0	0	0	0	0	2171	1624	56	5		5	C22orf42	22	32554966	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	1812478	32554966	18749600	629	158399											
LARGE	9215	broad.mit.edu	37	chr22	34046467	34046467	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatggagtaggtcttggaGtggttgcctcggcgatggga	17	7	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34046467	A	A	34046467	2	1	198	1	0	0	0	0	0	0	0	1	8699	1020	36	4		4	LARGE	22	34046467	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	1491501	34046467	17258099	630	158400											
IFT27	11020	broad.mit.edu	37	chr22	37163427	37163427	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtctgccgaggaacaccaaGaatgttagcactgagggccc	12	11	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37163427	C	C	37163427	1	2	198	0	1	0	0	0	0	0	0	0	7629	957	33	4		4	IFT27	22	37163427	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	3116960	37163427	14141139	631	158401											
RPL3	6122	broad.mit.edu	37	chr22	39709669	39709669	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagcacccgcttcttggtTcccaccacacagcctttcag	8	16	2	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39709669	A	A	39709669	2	1	198	1	0	0	0	0	0	0	0	1	13690	1770	62	5		5	RPL3	22	39709669	Silent	SNP	T	TCGA-67-4679-01B-01D-1753-08	2546242	39709669	11594897	632	158402											
CACNA1I	8911	broad.mit.edu	37	chr22	40069130	40069130	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaacggggacaagcagggGcgggatgagactcctcattg	18	8	1	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40069130	A	A	40069130	1	1	198	0	1	0	0	0	0	0	0	0	2572	1218	42	4		4	CACNA1I	22	40069130	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	359461	40069130	11235436	633	158403											
SMC1B	27127	broad.mit.edu	37	chr22	45750185	45750185	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatagctcttagaattcAtgagcctcttttctagtagg	8	7	4	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45750185	G	G	45750185	1	3	198	0	1	0	0	0	0	0	0	0	14896	232	8	5		5	SMC1B	22	45750185	Intron	SNP	A	TCGA-67-4679-01B-01D-1753-08	5681055	45750185	5554381	634	158404											
TRABD	80305	broad.mit.edu	37	chr22	50636319	50636319	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatggccgagatgattggcGagttcccagacctgcaccgc	13	12	0	4			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50636319	T	T	50636319	4	4	198	1	0	0	0	0	0	1	0	0	16559	1059	37	3	765	3	TRABD	22	50636319	Nonsense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	4886134	50636319	668247	635	158405											
SELO	83642	broad.mit.edu	37	chr22	50648819	50648819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaacctgctgcccccagGcactggcccgtgatgcttga	11	14	0	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50648819	T	T	50648819	1	4	198	0	1	0	0	0	0	0	0	0	14131	1218	42	3		3	SELO	22	50648819	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	12500	50648819	655747	636	158406											
CSF2RA	1438	broad.mit.edu	37	chrX	1407713	1407713	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaatgcggatttaatgaaCtgtacctgggcgaggggtcc	13	8	0	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1407713	T	T	1407713	2	4	198	1	0	0	0	0	0	0	0	1	3968	564	20	4		4	CSF2RA	23	1407713	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08		1407713	153862847	637	158407											
SFRS17A	8227	broad.mit.edu	37	chrX	1712605	1712605	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccgcttcgagggggaggtgGagaacaagagcctggtcaag	17	8	1	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1712605	C	C	1712605	3	2	198	1	0	0	0	0	1	0	0	0	14286	1175	41	4	252	4	SFRS17A	23	1712605	Missense_Mutation	SNP	G	TCGA-67-4679-01B-01D-1753-08	304892	1712605	153557955	638	158408											
ASMT	438	broad.mit.edu	37	chrX	1748717	1748717	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggttttgcatgccaggtcCgagggcgagcggctacagtt	16	9	0	0	rs144935309		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1748717	A	A	1748717	2	1	198	1	0	0	0	0	0	0	0	1	1049	639	23	1		1	ASMT	23	1748717	Silent	SNP	C	TCGA-67-4679-01B-01D-1753-08	36112	1748717	153521843	639	158409											
FRMPD4	9758	broad.mit.edu	37	chrX	12719971	12719971	+	Intron	DEL	C	-	-													ctattctttgacaagctgtgCcccctgctggtctcttcgca							TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12719971	-	-	12719971	6	5	198	0	1	1	0	1	0	0	0	0	6119	754	26	0		0	FRMPD4	23	12719971	Intron	DEL	C	TCGA-67-4679-01B-01D-1753-08	10971254	12719971	142550589	640	158410											
SCML2	10389	broad.mit.edu	37	chrX	18283678	18283678	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcactataaaaacctataaTacaaattaggaggacataca	6	7	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18283678	A	A	18283678	1	1	198	0	1	0	0	0	0	0	0	0	14023	1421	49	5		5	SCML2	23	18283678	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	5563707	18283678	136986882	641	158411											
MAGEB6	158809	broad.mit.edu	37	chrX	26213296	26213296	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttcactttatgttagaaGagagtagtgagctttctaag	9	4	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26213296	T	T	26213296	1	4	198	0	1	0	0	0	0	0	0	0	9271	957	33	3		3	MAGEB6	23	26213296	3'UTR	SNP	G	TCGA-67-4679-01B-01D-1753-08	7929618	26213296	129057264	642	158412											
CYBB	1536	broad.mit.edu	37	chrX	37653071	37653071	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagagaataaaggtaagccTctcattatctgacttagata	7	6	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37653071	A	A	37653071	1	1	198	0	1	0	0	0	0	0	0	0	4166	1566	54	5		5	CYBB	23	37653071	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	11439775	37653071	117617489	643	158413											
AKAP4	8852	broad.mit.edu	37	chrX	49961519	49961519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagaattagaagtggtGggatctcagaggttaagtgt	14	4	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49961519	T	T	49961519	1	4	198	0	1	0	0	0	0	0	0	0	453	1363	47	2		2	AKAP4	23	49961519	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	12308448	49961519	105309041	644	158414											
NHSL2	340527	broad.mit.edu	37	chrX	71359234	71359234	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatcaaggacatcactcGtcccacccagatgctcaggg	9	14	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71359234	T	T	71359234	2	4	198	1	0	0	0	0	0	0	0	1	10507	1132	40	3		3	NHSL2	23	71359234	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	21397715	71359234	83911326	645	158415											
DACH2	117154	broad.mit.edu	37	chrX	85969642	85969642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcaatgaatcagatgaaCcatctcaatactattgccaa	6	9	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85969642	A	A	85969642	3	1	198	1	0	0	0	0	1	0	0	0	4254	506	18	3	1045	3	DACH2	23	85969642	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	14610408	85969642	69300918	646	158416											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104651236	104651236	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgaacttcagtggtgctgaTctttctcgtttggaccttcg	10	9	3	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104651236	A	A	104651236	1	1	198	0	1	0	0	0	0	0	0	0	7732	1450	50	5		5	IL1RAPL2	23	104651236	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	18681594	104651236	50619324	647	158417											
CXorf57	55086	broad.mit.edu	37	chrX	105905221	105905221	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtttatagatcaattgtgTctatctccttgtgtctttaa	6	6	4	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105905221	C	C	105905221	1	2	198	0	1	0	0	0	0	0	0	0	4146	1682	58	5		5	CXorf57	23	105905221	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	1253985	105905221	49365339	648	158418											
PAK3	5063	broad.mit.edu	37	chrX	110406664	110406664	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgttgtactttcagctactCaaagtcctttttttttttaa	5	7	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110406664	A	A	110406664	1	1	198	0	1	0	0	0	0	0	0	0	11496	841	29	3		3	PAK3	23	110406664	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	4501443	110406664	44863896	649	158419											
DOCK11	139818	broad.mit.edu	37	chrX	117748608	117748608	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatttttaaaatttagacTtttagaattatgtaattaac	3	3	0	2			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117748608	A	A	117748608	1	1	198	0	1	0	0	0	0	0	0	0	4726	1624	56	5		5	DOCK11	23	117748608	Intron	SNP	T	TCGA-67-4679-01B-01D-1753-08	7341944	117748608	37521952	650	158420											
LONRF3	79836	broad.mit.edu	37	chrX	118109472	118109472	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccaggcccagcgcgagcGtcgcaactccggcacgaggg	14	15	0	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118109472	T	T	118109472	2	4	198	1	0	0	0	0	0	0	0	1	8983	1132	40	3		3	LONRF3	23	118109472	Silent	SNP	G	TCGA-67-4679-01B-01D-1753-08	360864	118109472	37161088	651	158421											
ARHGAP36	158763	broad.mit.edu	37	chrX	130219415	130219415	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctttcagagttcctgagctCaaatgctttggaaatgagca	10	8	2	3			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130219415	A	A	130219415	1	1	198	0	1	0	0	0	0	0	0	0	885	841	29	3		3	ARHGAP36	23	130219415	Intron	SNP	C	TCGA-67-4679-01B-01D-1753-08	12109943	130219415	25051145	652	158422											
PHF6	84295	broad.mit.edu	37	chrX	133548005	133548005	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tataagtgcatggtaagcatGgttcttttaagcccaatttt	8	6	1	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133548005	A	A	133548005	1	1	198	0	1	0	0	0	0	0	0	0	11933	1363	47	4		4	PHF6	23	133548005	Intron	SNP	G	TCGA-67-4679-01B-01D-1753-08	3328590	133548005	21722555	653	158423											
GPR112	139378	broad.mit.edu	37	chrX	135474497	135474497	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggttatcactctgcagcAtattggaggaaaccaggtaa	11	7	2	0			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135474497	G	G	135474497	3	3	198	1	0	0	0	0	1	0	0	0	6694	217	8	5	8072	5	GPR112	23	135474497	Missense_Mutation	SNP	A	TCGA-67-4679-01B-01D-1753-08	1926492	135474497	19796063	654	158424											
GABRQ	55879	broad.mit.edu	37	chrX	151814000	151814000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctaggtgcccctgtgcCtgtgagaatatctatttatg	9	9	3	1			TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151814000	A	A	151814000	3	1	198	1	0	0	0	0	1	0	0	0	6235	681	24	2	261	2	GABRQ	23	151814000	Missense_Mutation	SNP	C	TCGA-67-4679-01B-01D-1753-08	16339503	151814000	3456560	655	158425											
CCDC27	148870	broad.mit.edu	37	chr1	3671999	3671999	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccgcagcagtcaccagaTggcatctttaacactctaca	7	13	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3671999	G	G	3671999	1	3	199	0	1	0	0	0	0	0	0	0	2828	1479	51	5		5	CCDC27	1	3671999	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08		3671999	245578622	1	158426											
MTOR	2475	broad.mit.edu	37	chr1	11293060	11293060	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaattaagcaattcctggcCaagaaacaaaagtaaaatcg	7	7	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11293060	T	T	11293060	1	4	199	0	1	0	0	0	0	0	0	0	10048	609	21	4		4	MTOR	1	11293060	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	7621061	11293060	237957561	2	158427											
PRAMEF12	390999	broad.mit.edu	37	chr1	12835749	12835749	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttctggggcatatggtcTggagcttctgcactctcccc	10	13	4	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12835749	C	C	12835749	2	2	199	1	0	0	0	0	0	0	0	1	12529	1567	55	5		5	PRAMEF12	1	12835749	Silent	SNP	T	TCGA-67-6215-01A-11D-1753-08	1542689	12835749	236414872	3	158428											
COL16A1	1307	broad.mit.edu	37	chr1	32151529	32151529	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagggagaacaggaaagaaAcaaaggtggagctgagtcat	15	4	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32151529	T	T	32151529	1	4	199	0	1	0	0	0	0	0	0	0	3705	58	2	5		5	COL16A1	1	32151529	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	19315780	32151529	217099092	4	158429											
ERMAP	114625	broad.mit.edu	37	chr1	43304463	43304463	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggactagggacatagaagCgtcaccatcattttaatctt	8	9	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43304463	T	T	43304463	1	4	199	0	1	0	0	0	0	0	0	0	5276	783	27	4		4	ERMAP	1	43304463	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	11152934	43304463	205946158	5	158430											
CCDC24	149473	broad.mit.edu	37	chr1	44461327	44461327	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acccctctgaggcagccctgGagcccaccctggcaggtgag	13	16	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44461327	A	A	44461327	3	1	199	1	0	0	0	0	1	0	0	0	2826	1175	41	4	629	4	CCDC24	1	44461327	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	1156864	44461327	204789294	6	158431											
CYP4Z1	199974	broad.mit.edu	37	chr1	47548004	47548004	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgcccctctcatttcataAggtcgaggacttgtgaccct	9	12	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47548004	C	C	47548004	5	2	199	1	0	0	0	0	0	0	1	0	4227	86	3	5	377	5	CYP4Z1	1	47548004	Splice_Site	SNP	A	TCGA-67-6215-01A-11D-1753-08	3086677	47548004	201702617	7	158432											
GIPC2	54810	broad.mit.edu	37	chr1	78509111	78509111	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgattgcttctgtttaaAaatggggatctgctgatgga	12	5	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78509111	C	C	78509111	1	2	199	0	1	0	0	0	0	0	0	0	6457	29	1	5		5	GIPC2	1	78509111	5'Flank	SNP	A	TCGA-67-6215-01A-11D-1753-08	30961107	78509111	170741510	8	158433											
TTLL7	79739	broad.mit.edu	37	chr1	84415658	84415658	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaatcccatttcatctaTtactaaacgaactgcaagta	3	10	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84415658	C	C	84415658	3	2	199	1	0	0	0	0	1	0	0	0	16858	1493	52	5	2566	5	TTLL7	1	84415658	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	5906547	84415658	164834963	9	158434											
BTBD8	284697	broad.mit.edu	37	chr1	92573376	92573376	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacctcttgataataatAgaaaacaatttttggacgtt	7	5	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92573376	G	G	92573376	1	3	199	0	1	0	0	0	0	0	0	0	1557	435	15	5		5	BTBD8	1	92573376	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	8157718	92573376	156677245	10	158435											
PTGFRN	5738	broad.mit.edu	37	chr1	117509963	117509963	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacctcaggtgagcagtgAgccctgttgaatcataggtg	12	9	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117509963	C	C	117509963	1	2	199	0	1	0	0	0	0	0	0	0	12856	319	11	5		5	PTGFRN	1	117509963	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	24936587	117509963	131740658	11	158436											
HRNR	388697	broad.mit.edu	37	chr1	152187828	152187828	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcccatgttggccactgcTggaagaccgaccggagccag	14	13	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152187828	C	C	152187828	3	2	199	1	0	0	0	0	1	0	0	0	7426	1580	55	5	2279	5	HRNR	1	152187828	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	34677865	152187828	97062793	12	158437											
CD5L	922	broad.mit.edu	37	chr1	157805885	157805885	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccactggcctttctgttccAcctccacccgcccttcacag	5	21	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	157805885	C	C	157805885	3	2	199	1	0	0	0	0	1	0	0	0	3057	159	6	5	943	5	CD5L	1	157805885	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	5618057	157805885	91444736	13	158438											
ATP1A4	480	broad.mit.edu	37	chr1	160124926	160124926	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactccagaatgggtcaaatTctgtaagcaactgttcggag	10	9	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160124926	G	G	160124926	3	3	199	1	0	0	0	0	1	0	0	0	1135	1783	62	5	309	5	ATP1A4	1	160124926	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	2319041	160124926	89125695	14	158439											
NCSTN	23385	broad.mit.edu	37	chr1	160318908	160318908	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctggagagcaagcattttAccaggtaagaactagatgta	11	6	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160318908	G	G	160318908	3	3	199	1	0	0	0	0	1	0	0	0	10336	391	14	5	320	5	NCSTN	1	160318908	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	193982	160318908	88931713	15	158440											
GPA33	10223	broad.mit.edu	37	chr1	167023552	167023552	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctaacccttcctccgccGccctctgctgctggcctgtc	7	22	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167023552	A	A	167023552	1	1	199	0	1	0	0	0	0	0	0	0	6651	1102	38	4		4	GPA33	1	167023552	3'UTR	SNP	G	TCGA-67-6215-01A-11D-1753-08	6704644	167023552	82227069	16	158441											
C1orf112	55732	broad.mit.edu	37	chr1	169816858	169816858	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcagacctcgctacttAaattagagcttcctgactat	6	11	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169816858	G	G	169816858	3	3	199	1	0	0	0	0	1	0	0	0	2005	363	13	5	2042	5	C1orf112	1	169816858	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	2793306	169816858	79433763	17	158442											
KIFAP3	22920	broad.mit.edu	37	chr1	170003573	170003573	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtctttttaactcatgatCaataatattcatacacagag	4	7	4	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170003573	T	T	170003573	3	4	199	1	0	0	0	0	1	0	0	0	8381	826	29	4	1752	4	KIFAP3	1	170003573	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	186715	170003573	79247048	18	158443											
TPR	7175	broad.mit.edu	37	chr1	186300623	186300623	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtactttaggtatgttttTacttacttctccaatggaat	7	6	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186300623	C	C	186300623	1	2	199	0	1	0	0	0	0	0	0	0	16540	1769	61	5		5	TPR	1	186300623	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	16297050	186300623	62949998	19	158444											
CR2	1380	broad.mit.edu	37	chr1	207642160	207642160	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttagaggcacgctgtaaatCtctaggacgatttcccaatg	9	9	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207642160	T	T	207642160	3	4	199	1	0	0	0	0	1	0	0	0	3874	913	32	4	664	4	CR2	1	207642160	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	21341537	207642160	41608461	20	158445											
USH2A	7399	broad.mit.edu	37	chr1	216380487	216380487	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagtgaaatttgtaattttAtctctgtttgaaacactctg	6	6	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216380487	G	G	216380487	1	3	199	0	1	0	0	0	0	0	0	0	17162	464	16	5		5	USH2A	1	216380487	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	8738327	216380487	32870134	21	158446											
CABC1	56997	broad.mit.edu	37	chr1	227169734	227169734	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcccgcccacagggaagaAggccgtgctgggttccagtc	14	13	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227169734	C	C	227169734	3	2	199	1	0	0	0	0	1	0	0	0	2553	72	3	5	755	5	CABC1	1	227169734	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	10789247	227169734	22080887	22	158447											
CDC42BPA	8476	broad.mit.edu	37	chr1	227223259	227223259	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaggaggaactggacaAgtggttggagctttgtttac	14	5	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227223259	C	C	227223259	2	2	199	1	0	0	0	0	0	0	0	1	3102	59	3	5		5	CDC42BPA	1	227223259	Silent	SNP	A	TCGA-67-6215-01A-11D-1753-08	53525	227223259	22027362	23	158448											
HEATR1	55127	broad.mit.edu	37	chr1	236737633	236737633	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaaaatggttttgtaaTctagagggggtagaaaaaag	12	2	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236737633	C	C	236737633	3	2	199	1	0	0	0	0	1	0	0	0	7094	1449	50	5	3194	5	HEATR1	1	236737633	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	9514374	236737633	12512988	24	158449											
SMYD3	64754	broad.mit.edu	37	chr1	246091367	246091367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggggggaagactgtcacaGctcagcaggtagagtcaact	14	8	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246091367	A	A	246091367	1	1	199	0	1	0	0	0	0	0	0	0	14937	986	34	4		4	SMYD3	1	246091367	Intron	SNP	G	TCGA-67-6215-01A-11D-1753-08	9353734	246091367	3159254	25	158450											
ROCK2	9475	broad.mit.edu	37	chr2	11376157	11376157	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcataatcagaacaaaaatTtaaaaaactattattactat	1	5	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11376157	C	C	11376157	1	2	199	0	1	0	0	0	0	0	0	0	13629	1856	64	5		5	ROCK2	2	11376157	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08		11376157	231823216	26	158451											
APOB	338	broad.mit.edu	37	chr2	21233338	21233338	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctccttggcatgtgaaacTtgtctctcccaattgaatga	7	10	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21233338	G	G	21233338	3	3	199	1	0	0	0	0	1	0	0	0	787	1606	56	5	7305	5	APOB	2	21233338	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	9857181	21233338	221966035	27	158452											
ASXL2	55252	broad.mit.edu	37	chr2	26022410	26022410	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccggcacatctttctgaaAatgtaggcatccaattagga	8	9	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26022410	C	C	26022410	1	2	199	0	1	0	0	0	0	0	0	0	1071	29	1	5		5	ASXL2	2	26022410	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	4789072	26022410	217176963	28	158453											
LRPPRC	10128	broad.mit.edu	37	chr2	44170804	44170804	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaatgccaacatttaaaAttcaaaattcaattaactta	1	6	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44170804	C	C	44170804	1	2	199	0	1	0	0	0	0	0	0	0	9052	116	4	5		5	LRPPRC	2	44170804	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	18148394	44170804	199028569	29	158454											
LRPPRC	10128	broad.mit.edu	37	chr2	44187665	44187665	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctatcaagtttaccgctaAtgttgtatacttacaaaatg	5	7	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44187665	C	C	44187665	1	2	199	0	1	0	0	0	0	0	0	0	9052	116	4	5		5	LRPPRC	2	44187665	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	16861	44187665	199011708	30	158455											
SRBD1	55133	broad.mit.edu	37	chr2	45778344	45778344	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcgccctggaacagggCttgttaaaaggagctgacga	15	8	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45778344	T	T	45778344	3	4	199	1	0	0	0	0	1	0	0	0	15251	797	28	4	1432	4	SRBD1	2	45778344	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	1590679	45778344	197421029	31	158456											
ANTXR1	84168	broad.mit.edu	37	chr2	69330049	69330049	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcctctgcagcttcaAgatcaatgactcggtcacac	9	13	4	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69330049	C	C	69330049	3	2	199	1	0	0	0	0	1	0	0	0	711	72	3	5	817	5	ANTXR1	2	69330049	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	23551705	69330049	173869324	32	158457											
RETSAT	54884	broad.mit.edu	37	chr2	85570424	85570424	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcttaaggtctgagtacaAgttccgcttcaggatggcgc	11	9	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85570424	C	C	85570424	3	2	199	1	0	0	0	0	1	0	0	0	13346	69	3	5	62	5	RETSAT	2	85570424	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	16240375	85570424	157628949	33	158458											
GCC2	9648	broad.mit.edu	37	chr2	109085399	109085399	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtggtcaatccaccattTtttaaccccaggcaaataaa	5	11	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109085399	C	C	109085399	1	2	199	0	1	0	0	0	0	0	0	0	6348	1856	64	5		5	GCC2	2	109085399	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	23514975	109085399	134113974	34	158459											
WDR33	55339	broad.mit.edu	37	chr2	128467452	128467452	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaagagaaaacagcagaAtgtccatctcagagaacacc	8	9	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128467452	C	C	128467452	1	2	199	0	1	0	0	0	0	0	0	0	17414	116	4	5		5	WDR33	2	128467452	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	19382053	128467452	114731921	35	158460											
HS6ST1	9394	broad.mit.edu	37	chr2	129025897	129025897	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctgccgcttgtactggtAgcgctgctggaagaggtcct	14	11	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129025897	G	G	129025897	3	3	199	1	0	0	0	0	1	0	0	0	7437	420	15	5	164	5	HS6ST1	2	129025897	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	558445	129025897	114173476	36	158461											
LCT	3938	broad.mit.edu	37	chr2	136581471	136581471	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcaatggcccactcacCttcaaaaaggctgaagagca	8	12	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136581471	T	T	136581471	3	4	199	1	0	0	0	0	1	0	0	0	8765	695	24	4	4932	4	LCT	2	136581471	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	7555574	136581471	106617902	37	158462											
SLC4A10	57282	broad.mit.edu	37	chr2	162696373	162696373	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacacattcctcatgaccttTtcacagaactggatgagatt	6	10	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162696373	G	G	162696373	3	3	199	1	0	0	0	0	1	0	0	0	14765	1841	64	5	451	5	SLC4A10	2	162696373	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	26114902	162696373	80503000	38	158463											
TTN	7273	broad.mit.edu	37	chr2	179470526	179470526	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttcaacttaattatgtaaAaaatagccttctgtttggca	5	7	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179470526	C	C	179470526	1	2	199	0	1	0	0	0	0	0	0	0	16861	29	1	5		5	TTN	2	179470526	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	16774153	179470526	63728847	39	158464											
TTN	7273	broad.mit.edu	37	chr2	179572258	179572258	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaggtgtctgtacctttaAtggtcacttttgatttggta	10	5	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179572258	C	C	179572258	3	2	199	1	0	0	0	0	1	0	0	0	16861	101	4	5	75545	5	TTN	2	179572258	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	101732	179572258	63627115	40	158465											
CERKL	375298	broad.mit.edu	37	chr2	182403906	182403906	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagtttcatcctcctccTcctctggattatatccacca	4	15	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182403906	G	G	182403906	3	3	199	1	0	0	0	0	1	0	0	0	3298	1551	54	5	155	5	CERKL	2	182403906	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	2831648	182403906	60795467	41	158466											
GLS	2744	broad.mit.edu	37	chr2	191795370	191795370	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttttttttaacccatttTccatagttcattaactcttg	2	9	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	191795370	G	G	191795370	1	3	199	0	1	0	0	0	0	0	0	0	6527	1798	62	5		5	GLS	2	191795370	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	9391464	191795370	51404003	42	158467											
CCDC108	255101	broad.mit.edu	37	chr2	219900304	219900305	+	In_Frame_Ins	INS	-	CCT	CCT													ccaatgcagctcctcagccaINScctcaatgccccagatgacc							TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CCT	219900305	CCT	CCT	219900304	7	5	199	1	0	1	1	0	0	0	0	0	2769	159	6	0	5609	0	CCDC108	2	219900304	In_Frame_Ins	INS	-	TCGA-67-6215-01A-11D-1753-08	28104934	219900304	23299069	43	158468											
TMEM198	130612	broad.mit.edu	37	chr2	220412409	220412409	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatgctagtgcgcagcgtGggcctcttcctggtggggct	16	12	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220412409	A	A	220412409	2	1	199	1	0	0	0	0	0	0	0	1	16242	1335	47	4		4	TMEM198	2	220412409	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	512105	220412409	22786964	44	158469											
PID1	55022	broad.mit.edu	37	chr2	229890249	229890249	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccttggtcagccaatagtTtggcagtcttttcatcccaa	7	11	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	229890249	G	G	229890249	1	3	199	0	1	0	0	0	0	0	0	0	11977	1856	64	5		5	PID1	2	229890249	3'UTR	SNP	T	TCGA-67-6215-01A-11D-1753-08	9477840	229890249	13309124	45	158470											
PSMD1	5707	broad.mit.edu	37	chr2	231988074	231988074	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgagtgtccattctctaAtagtatatcatagttctgtg	7	6	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231988074	C	C	231988074	1	2	199	0	1	0	0	0	0	0	0	0	12798	116	4	5		5	PSMD1	2	231988074	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	2097825	231988074	11211299	46	158471											
ATG7	10533	broad.mit.edu	37	chr3	11406063	11406063	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaatcttatgtagattTctgctagatcatcctcccat	5	9	3	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11406063	C	C	11406063	1	2	199	0	1	0	0	0	0	0	0	0	1105	1798	62	5		5	ATG7	3	11406063	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08		11406063	186616367	47	158472											
EFHB	151651	broad.mit.edu	37	chr3	19921190	19921190	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagaacatttctgatgttcTcaacacaaacttctcctctg	4	12	4	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19921190	G	G	19921190	3	3	199	1	0	0	0	0	1	0	0	0	4985	1551	54	5	70	5	EFHB	3	19921190	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	8515127	19921190	178101240	48	158473											
GOLGA4	2803	broad.mit.edu	37	chr3	37365668	37365668	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaatcaacttgagcttcTcttgaaggaaagggacaagc	9	7	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37365668	C	C	37365668	3	2	199	1	0	0	0	0	1	0	0	0	6619	1551	54	5	2415	5	GOLGA4	3	37365668	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	17444478	37365668	160656762	49	158474											
ATRIP	84126	broad.mit.edu	37	chr3	48501156	48501156	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagatctcccatgtcagAaccttctagagtcatcttgt	7	10	5	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48501156	G	G	48501156	1	3	199	0	1	0	0	0	0	0	0	0	1209	261	9	5		5	ATRIP	3	48501156	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	11135488	48501156	149521274	50	158475											
PARP3	10039	broad.mit.edu	37	chr3	51978834	51978834	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactgtgactaagcgggtgcAgccctgctccctggacccag	13	14	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51978834	T	T	51978834	3	4	199	1	0	0	0	0	1	0	0	0	11556	188	7	5	581	5	PARP3	3	51978834	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	3477678	51978834	146043596	51	158476											
CADPS	8618	broad.mit.edu	37	chr3	62522348	62522348	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacaggaattcactagacaTtatgaacgttagctgtttcc	7	9	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62522348	G	G	62522348	1	3	199	0	1	0	0	0	0	0	0	0	2596	1508	52	5		5	CADPS	3	62522348	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	10543514	62522348	135500082	52	158477											
MAGI1	9223	broad.mit.edu	37	chr3	65673793	65673793	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcacataggtgttgcttgcaGattctaggtgcaggactgtt	13	7	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65673793	T	T	65673793	1	4	199	0	1	0	0	0	0	0	0	0	9282	957	33	3		3	MAGI1	3	65673793	Intron	SNP	G	TCGA-67-6215-01A-11D-1753-08	3151445	65673793	132348637	53	158478											
SLC15A2	6565	broad.mit.edu	37	chr3	121641974	121641974	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggctcttttggatcagCaggtaagaatagttcttttg	11	6	4	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121641974	A	A	121641974	3	1	199	1	0	0	0	0	1	0	0	0	14512	711	25	3	993	3	SLC15A2	3	121641974	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	55968181	121641974	76380456	54	158479											
CHCHD6	84303	broad.mit.edu	37	chr3	126445891	126445891	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcacttctgtgacataactTtttcttttccctcttttctg	5	11	4	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126445891	C	C	126445891	1	2	199	0	1	0	0	0	0	0	0	0	3351	1856	64	5		5	CHCHD6	3	126445891	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	4803917	126445891	71576539	55	158480											
IFT122	55764	broad.mit.edu	37	chr3	129168601	129168601	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattcgtagttattctttttCtcctcagtacacacacagtg	5	10	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129168601	T	T	129168601	1	4	199	0	1	0	0	0	0	0	0	0	7625	928	32	4		4	IFT122	3	129168601	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	2722710	129168601	68853829	56	158481											
PLXND1	23129	broad.mit.edu	37	chr3	129305021	129305021	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtccagcctcaccgcgtcTccagggcacaccagccgcag	11	18	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129305021	C	C	129305021	3	2	199	1	0	0	0	0	1	0	0	0	12222	1551	54	5	4194	5	PLXND1	3	129305021	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	136420	129305021	68717409	57	158482											
ACAD11	84129	broad.mit.edu	37	chr3	132360968	132360968	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaattgttaaatcacggaAgattcgaccctatggaagtg	11	6	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132360968	C	C	132360968	3	2	199	1	0	0	0	0	1	0	0	0	109	72	3	5	2025	5	ACAD11	3	132360968	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	3055947	132360968	65661462	58	158483											
HPS3	84343	broad.mit.edu	37	chr3	148880568	148880568	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtctcccagatgtggtacTtcaggaactctttttcaaac	7	10	4	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148880568	G	G	148880568	3	3	199	1	0	0	0	0	1	0	0	0	7407	1609	56	5	2434	5	HPS3	3	148880568	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	16519600	148880568	49141862	59	158484											
TNFSF10	8743	broad.mit.edu	37	chr3	172224294	172224294	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtcagttagccaactaaAaaggccccaaaaaaactggc	8	11	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172224294	C	C	172224294	3	2	199	1	0	0	0	0	1	0	0	0	16424	11	1	5	15	5	TNFSF10	3	172224294	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	23343726	172224294	25798136	60	158485											
TBL1XR1	79718	broad.mit.edu	37	chr3	176752054	176752054	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactccatttgatagtataAatttctttattatgtgcttg	7	5	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176752054	C	C	176752054	3	2	199	1	0	0	0	0	1	0	0	0	15762	10	1	5	378	5	TBL1XR1	3	176752054	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	4527760	176752054	21270376	61	158486											
HTR3C	170572	broad.mit.edu	37	chr3	183774848	183774848	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaggtaagtgtgacacatTttggtagctgtttaagattc	10	6	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183774848	G	G	183774848	1	3	199	0	1	0	0	0	0	0	0	0	7516	1856	64	5		5	HTR3C	3	183774848	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	7022794	183774848	14247582	62	158487											
LYAR	55646	broad.mit.edu	37	chr4	4281094	4281094	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaggctgccttgacTtccaaaaataagaaattccc	6	9	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4281094	A	A	4281094	1	1	199	0	1	0	0	0	0	0	0	0	9191	1624	56	5		5	LYAR	4	4281094	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08		4281094	186873182	63	158488											
ACOX3	8310	broad.mit.edu	37	chr4	8393936	8393936	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctgtgttccaataaaacTttatttgcaaaaacaggtgg	9	6	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8393936	G	G	8393936	1	3	199	0	1	0	0	0	0	0	0	0	160	1624	56	5		5	ACOX3	4	8393936	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	4112842	8393936	182760340	64	158489											
WDR19	57728	broad.mit.edu	37	chr4	39201143	39201143	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatgttggaatgcagaaaAtctgcttgctttaggtggtg	14	4	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39201143	C	C	39201143	3	2	199	1	0	0	0	0	1	0	0	0	17406	101	4	5	474	5	WDR19	4	39201143	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	30807207	39201143	151953133	65	158490											
EXOC1	55763	broad.mit.edu	37	chr4	56724547	56724547	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacaccaaatgatgaacgcCtgctgagcattgtgaatgtc	9	9	0	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56724547	T	T	56724547	2	4	199	1	0	0	0	0	0	0	0	1	5343	680	24	4		4	EXOC1	4	56724547	Silent	SNP	C	TCGA-67-6215-01A-11D-1753-08	17523404	56724547	134429729	66	158491											
REST	5978	broad.mit.edu	37	chr4	57797750	57797750	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgagagcctacctggtcTtgctgctaatatcaacgaat	9	9	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57797750	G	G	57797750	3	3	199	1	0	0	0	0	1	0	0	0	13342	1609	56	5	2736	5	REST	4	57797750	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	1073203	57797750	133356526	67	158492											
UBA6	55236	broad.mit.edu	37	chr4	68506908	68506908	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataggaactgtctatttaaGttggatttctctatcaagtc	7	6	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68506908	A	A	68506908	2	1	199	1	0	0	0	0	0	0	0	1	16958	1020	36	4		4	UBA6	4	68506908	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	10709158	68506908	122647368	68	158493											
RUFY3	22902	broad.mit.edu	37	chr4	71665865	71665865	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcttttggcaggatgggaAgcacaaaatgcaagaggaaa	12	5	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71665865	C	C	71665865	3	2	199	1	0	0	0	0	1	0	0	0	13851	72	3	5	2066	5	RUFY3	4	71665865	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	3158957	71665865	119488411	69	158494											
ADAMTS3	9508	broad.mit.edu	37	chr4	73175249	73175249	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccactttctggagagagaAgatgtcaaatgtggctaatt	11	7	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73175249	C	C	73175249	1	2	199	0	1	0	0	0	0	0	0	0	267	87	3	5		5	ADAMTS3	4	73175249	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	1509384	73175249	117979027	70	158495											
PPEF2	5470	broad.mit.edu	37	chr4	76804236	76804236	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcccgtgtacctggaaaAaatgatataaacaaaatgtt	6	8	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76804236	G	G	76804236	1	3	199	0	1	0	0	0	0	0	0	0	12404	29	1	5		5	PPEF2	4	76804236	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	3628987	76804236	114350040	71	158496											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99337939	99337939	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcaggcctagtagagtgTctactagagattgttcagca	12	7	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99337939	C	C	99337939	2	2	199	1	0	0	0	0	0	0	0	1	13147	1673	58	5		5	RAP1GDS1	4	99337939	Silent	SNP	T	TCGA-67-6215-01A-11D-1753-08	22533703	99337939	91816337	72	158497											
CCDC109B	55013	broad.mit.edu	37	chr4	110606516	110606516	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaagttaaaagaagaccTtgctaaggtatactacaaat	6	7	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110606516	G	G	110606516	3	3	199	1	0	0	0	0	1	0	0	0	2771	1609	56	5	952	5	CCDC109B	4	110606516	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	11268577	110606516	80547760	73	158498											
DDX60L	91351	broad.mit.edu	37	chr4	169393729	169393729	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttacacagctatataatTtagtaattattaaggaaatg	5	3	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169393729	G	G	169393729	1	3	199	0	1	0	0	0	0	0	0	0	4412	1856	64	5		5	DDX60L	4	169393729	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	58787213	169393729	21760547	74	158499											
VEGFC	7424	broad.mit.edu	37	chr4	177605128	177605128	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagggacacaacgacacacTtcttcactatatgaaaatcc	6	11	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177605128	G	G	177605128	3	3	199	1	0	0	0	0	1	0	0	0	17279	1606	56	5	54	5	VEGFC	4	177605128	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	8211399	177605128	13549148	75	158500											
FAM105A	54491	broad.mit.edu	37	chr5	14607605	14607605	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataaaaagactaggaataAaagcacatatcccagataga	6	6	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14607605	C	C	14607605	1	2	199	0	1	0	0	0	0	0	0	0	5433	29	1	5		5	FAM105A	5	14607605	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08		14607605	166307655	76	158501											
ZFR	51663	broad.mit.edu	37	chr5	32419835	32419835	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtattttggaagccccaAgtttgagaagcaatggctag	12	6	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32419835	C	C	32419835	1	2	199	0	1	0	0	0	0	0	0	0	17785	87	3	5		5	ZFR	5	32419835	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	17812230	32419835	148495425	77	158502											
C5orf42	65250	broad.mit.edu	37	chr5	37125518	37125518	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataatgctgaattctgagaAatttaacaagcaagacatca	6	6	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37125518	C	C	37125518	1	2	199	0	1	0	0	0	0	0	0	0	2324	29	1	5		5	C5orf42	5	37125518	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	4705683	37125518	143789742	78	158503											
ANKRD55	79722	broad.mit.edu	37	chr5	55422837	55422837	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcccgctgccgctgcgaTatgtacacatgtcttcccac	9	15	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55422837	G	G	55422837	3	3	199	1	0	0	0	0	1	0	0	0	681	1406	49	5	1155	5	ANKRD55	5	55422837	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	18297319	55422837	125492423	79	158504											
MAP3K1	4214	broad.mit.edu	37	chr5	56170727	56170727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtggctggatatatttgaAgttgtgaaggatggtaaaga	14	1	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56170727	G	G	56170727	1	3	199	0	1	0	0	0	0	0	0	0	9335	87	3	5		5	MAP3K1	5	56170727	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	747890	56170727	124744533	80	158505											
TAF9	6880	broad.mit.edu	37	chr5	68660800	68660800	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatagtcatcatcatcatcAtcgtcatcatcatcatcttc	2	13	11	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68660800	G	G	68660800	2	3	199	1	0	0	0	0	0	0	0	1	15654	214	8	5		5	TAF9	5	68660800	Silent	SNP	A	TCGA-67-6215-01A-11D-1753-08	12490073	68660800	112254460	81	158506											
POLK	51426	broad.mit.edu	37	chr5	74892214	74892214	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaatgtctcataagaagAgtttctttgataaaaaacga	7	4	2	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74892214	G	G	74892214	3	3	199	1	0	0	0	0	1	0	0	0	12299	304	11	5	1742	5	POLK	5	74892214	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	6231414	74892214	106023046	82	158507											
PDE8B	8622	broad.mit.edu	37	chr5	76645437	76645437	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctccccaatgcacttttTtttctgagttttagaatttc	4	11	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76645437	A	A	76645437	1	1	199	0	1	0	0	0	0	0	0	0	11748	1856	64	5		5	PDE8B	5	76645437	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	1753223	76645437	104269823	83	158508											
EDIL3	10085	broad.mit.edu	37	chr5	83680001	83680011	+	Intron	DEL	CGCGCCGCCAG	-	-													ccaggactcgacgcctcctcCgcgccgccagcggcgctcgc					rs149041609	by1000genomes	TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	83680011	-	-	83680001	6	5	199	0	1	1	0	1	0	0	0	0	4955	667	23	0		0	EDIL3	5	83680001	Intron	DEL	CGCGCCGCCAG	TCGA-67-6215-01A-11D-1753-08	7034564	83680001	97235259	84	158509											
ERAP2	64167	broad.mit.edu	37	chr5	96253179	96253179	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacaggtgaaactattttTtgaatctcttgaggctcaag	8	6	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96253179	G	G	96253179	3	3	199	1	0	0	0	0	1	0	0	0	5246	1841	64	5	2823	5	ERAP2	5	96253179	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	12573178	96253179	84662081	85	158510											
FER	2241	broad.mit.edu	37	chr5	108522154	108522154	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaccatctctggggttcAgaagcagatttatctaacat	9	8	3	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108522154	C	C	108522154	1	2	199	0	1	0	0	0	0	0	0	0	5870	203	7	5		5	FER	5	108522154	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	12268975	108522154	72393106	86	158511											
YTHDC2	64848	broad.mit.edu	37	chr5	112889569	112889569	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagtaagcttcataaaatcTtctttttaacactttcatta	2	7	4	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112889569	C	C	112889569	1	2	199	0	1	0	0	0	0	0	0	0	17624	1624	56	5		5	YTHDC2	5	112889569	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	4367415	112889569	68025691	87	158512											
CCDC112	153733	broad.mit.edu	37	chr5	114612845	114612845	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgatcactgttagtaaaAgccaagagcaattaaataaa	7	6	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114612845	C	C	114612845	1	2	199	0	1	0	0	0	0	0	0	0	2775	87	3	5		5	CCDC112	5	114612845	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	1723276	114612845	66302415	88	158513											
PCDHA4	56144	broad.mit.edu	37	chr5	140189052	140189052	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaggccgagggtgtgctcTggtgagggcccacccaagac	17	11	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140189052	C	C	140189052	2	2	199	1	0	0	0	0	0	0	0	1	11620	1567	55	5		5	PCDHA4	5	140189052	Silent	SNP	T	TCGA-67-6215-01A-11D-1753-08	25576207	140189052	40726208	89	158514											
PCDHA6	56142	broad.mit.edu	37	chr5	140209755	140209755	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggcccagaggcggcgctGgtggatgtcaacgtgtacct	17	11	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140209755	A	A	140209755	2	1	199	1	0	0	0	0	0	0	0	1	11622	1335	47	4		4	PCDHA6	5	140209755	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	20703	140209755	40705505	90	158515											
PCDHB6	56130	broad.mit.edu	37	chr5	140529864	140529864	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaactaaagtacagaacaAgaaaaggcaagtggctttct	9	7	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140529864	C	C	140529864	3	2	199	1	0	0	0	0	1	0	0	0	11640	72	3	5	28	5	PCDHB6	5	140529864	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	320109	140529864	40385396	91	158516											
SPINK7	84651	broad.mit.edu	37	chr5	147693633	147693633	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcttggggtctgggagaaAaacaggacatttgcttgtat	13	5	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147693633	G	G	147693633	1	3	199	0	1	0	0	0	0	0	0	0	15182	29	1	5		5	SPINK7	5	147693633	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	7163769	147693633	33221627	92	158517											
NMUR2	56923	broad.mit.edu	37	chr5	151784142	151784142	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatgctggtgttgggcaggGagaagagcacggagaagccc	19	7	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151784142	A	A	151784142	3	1	199	1	0	0	0	0	1	0	0	0	10602	1174	41	4	730	4	NMUR2	5	151784142	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	4090509	151784142	29131118	93	158518											
EXOC2	55770	broad.mit.edu	37	chr6	488896	488896	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcttcctagaatccaaatCattatttttaaaaggtattt	4	7	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	488896	T	T	488896	1	4	199	0	1	0	0	0	0	0	0	0	5344	841	29	4		4	EXOC2	6	488896	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08		488896	170626171	94	158519											
BPHL	670	broad.mit.edu	37	chr6	3129325	3129325	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggggtggagtgatggggGcataaccgcactcattgctg	17	8	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3129325	A	A	3129325	3	1	199	1	0	0	0	0	1	0	0	0	1498	1203	42	4	439	4	BPHL	6	3129325	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	2640429	3129325	167985742	95	158520											
TDP2	51567	broad.mit.edu	37	chr6	24651080	24651080	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaaatctaccacagtccAgtttttctaatccaagaagg	7	9	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24651080	G	G	24651080	3	3	199	1	0	0	0	0	1	0	0	0	15851	188	7	5	67	5	TDP2	6	24651080	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	21521755	24651080	146463987	96	158521											
ZNF391	346157	broad.mit.edu	37	chr6	27368305	27368305	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcagtgacactcaaagaAattttcacaggggaggaagg	13	6	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27368305	C	C	27368305	3	2	199	1	0	0	0	0	1	0	0	0	18006	11	1	5	158	5	ZNF391	6	27368305	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	2717225	27368305	143746762	97	158522											
PGBD1	84547	broad.mit.edu	37	chr6	28264604	28264604	+	Silent	SNP	G	A	A													tctttttagacattggtgaaGactgaggaagaaacagccca							TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28264604	A	A	28264604	2	1	199	1	0	0	0	0	0	0	0	1	11875	933	33	4		4	PGBD1	6	28264604	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	896299	28264604	142850463	98	158523	672	2	1	121		5	4	1141	N	G	1.586176e-07
PGBD1	84547	broad.mit.edu	37	chr6	28264610	28264610	+	Silent	SNP	G	A	A													tagacattggtgaagactgaGgaagaaacagcccaggccgt							TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28264610	A	A	28264610	2	1	199	1	0	0	0	0	0	0	0	1	11875	991	35	4		4	PGBD1	6	28264610	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	6	28264610	142850457	99	158524	672	2	1	121		5	4	1141	N	G	1.586176e-07
PGBD1	84547	broad.mit.edu	37	chr6	28264697	28264697	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgggaactcagctcaggaGacagttatgagcctcagtcc	12	10	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28264697	C	C	28264697	3	2	199	1	0	0	0	0	1	0	0	0	11875	933	33	4	761	4	PGBD1	6	28264697	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	87	28264697	142850370	100	158525			1	121		5	4	1141	N	G	1.586176e-07
PGBD1	84547	broad.mit.edu	37	chr6	28265725	28265725	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcaaagcaagaaacttctGaagaaatggaacaaagtgga	10	5	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28265725	A	A	28265725	3	1	199	1	0	0	0	0	1	0	0	0	11875	1291	45	4	844	4	PGBD1	6	28265725	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	1028	28265725	142849342	101	158526			1	121		5	4	1141	N	G	1.586176e-07
PGBD1	84547	broad.mit.edu	37	chr6	28265744	28265744	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaagaaatggaacaaagtgGagaagcctcaggaaagccca	12	7	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28265744	C	C	28265744	3	2	199	1	0	0	0	0	1	0	0	0	11875	1174	41	4	863	4	PGBD1	6	28265744	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	19	28265744	142849323	102	158527			1	121		5	4	1141	N	G	1.586176e-07
C2	717	broad.mit.edu	37	chr6	31912805	31912805	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggagattcaggttttttcAggtgagaaggtagaagcttg	15	4	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31912805	G	G	31912805	3	3	199	1	0	0	0	0	1	0	0	0	2096	202	7	5	2221	5	C2	6	31912805	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	3647061	31912805	139202262	103	158528											
TSPO2	222642	broad.mit.edu	37	chr6	41011894	41011894	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggccctagggcatgggaGaggagggacgcccagggtgg	21	8	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41011894	T	T	41011894	1	4	199	0	1	0	0	0	0	0	0	0	16781	957	33	3		3	TSPO2	6	41011894	3'UTR	SNP	G	TCGA-67-6215-01A-11D-1753-08	9099089	41011894	130103173	104	158529											
TRERF1	55809	broad.mit.edu	37	chr6	42231109	42231109	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctggcttgtctctggcGgagggggcggcaacggtgct	19	10	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42231109	A	A	42231109	2	1	199	1	0	0	0	0	0	0	0	1	16599	1103	39	4		4	TRERF1	6	42231109	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	1219215	42231109	128883958	105	158530											
CYP39A1	51302	broad.mit.edu	37	chr6	46605759	46605759	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcagacccgaagaccaaAgaagaaaggcaaaggataca	10	8	1	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46605759	C	C	46605759	1	2	199	0	1	0	0	0	0	0	0	0	4210	87	3	5		5	CYP39A1	6	46605759	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	4374650	46605759	124509308	106	158531											
DST	667	broad.mit.edu	37	chr6	56470190	56470190	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaactatcccttgtatttTtaccaggcaaaagtttgaga	7	7	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56470190	G	G	56470190	1	3	199	0	1	0	0	0	0	0	0	0	4823	1856	64	5		5	DST	6	56470190	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	9864431	56470190	114644877	107	158532											
TTK	7272	broad.mit.edu	37	chr6	80723075	80723075	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgattcctgtgaattaagaAatttaaaggtattttaattc	6	3	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80723075	C	C	80723075	3	2	199	1	0	0	0	0	1	0	0	0	16846	14	1	5	1006	5	TTK	6	80723075	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	24252885	80723075	90391992	108	158533											
PLEKHG1	57480	broad.mit.edu	37	chr6	151089945	151089945	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaaatgaatgcagcctaAgaaactttacctgtaacccc	5	12	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151089945	C	C	151089945	1	2	199	0	1	0	0	0	0	0	0	0	12163	87	3	5		5	PLEKHG1	6	151089945	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	70366870	151089945	20025122	109	158534											
RBAK	57786	broad.mit.edu	37	chr7	5103663	5103663	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctattctcacaatgaagaAaatattcttcagaaaattag	4	7	3	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5103663	C	C	5103663	3	2	199	1	0	0	0	0	1	0	0	0	13208	11	1	5	590	5	RBAK	7	5103663	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08		5103663	154035000	110	158535											
THSD7A	221981	broad.mit.edu	37	chr7	11521373	11521373	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaagatgcacactaacTtttgaaacgaacctagatgg	7	8	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11521373	C	C	11521373	1	2	199	0	1	0	0	0	0	0	0	0	16002	1624	56	5		5	THSD7A	7	11521373	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	6417710	11521373	147617290	111	158536											
TRA2A	29896	broad.mit.edu	37	chr7	23547194	23547194	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtcacgtataattcaccAgtcttgaagtaatcattact	5	8	4	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23547194	G	G	23547194	1	3	199	0	1	0	0	0	0	0	0	0	16557	203	7	5		5	TRA2A	7	23547194	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	12025821	23547194	135591469	112	158537											
HECW1	23072	broad.mit.edu	37	chr7	43506180	43506180	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaattatgtgagtgccctaAaatgcagagggggcggcctg	14	9	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43506180	C	C	43506180	1	2	199	0	1	0	0	0	0	0	0	0	7109	29	1	5		5	HECW1	7	43506180	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	19958986	43506180	115632483	113	158538											
PCOLCE	5118	broad.mit.edu	37	chr7	100201142	100201142	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctacccccctaataaggAgtgcatctggaccataacgg	8	14	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100201142	G	G	100201142	3	3	199	1	0	0	0	0	1	0	0	0	11688	304	11	5	191	5	PCOLCE	7	100201142	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	56694962	100201142	58937521	114	158539											
MUC17	140453	broad.mit.edu	37	chr7	100678181	100678181	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgaaggaaccactccgTtagcaagtatgcctgtcagc	10	12	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100678181	C	C	100678181	2	2	199	1	0	0	0	0	0	0	0	1	10068	1722	60	5		5	MUC17	7	100678181	Silent	SNP	T	TCGA-67-6215-01A-11D-1753-08	477039	100678181	58460482	115	158540											
RELN	5649	broad.mit.edu	37	chr7	103202292	103202292	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcacaaatccctcgtccTgagcacatccaagggcaccc	7	17	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103202292	G	G	103202292	2	3	199	1	0	0	0	0	0	0	0	1	13328	1567	55	5		5	RELN	7	103202292	Silent	SNP	T	TCGA-67-6215-01A-11D-1753-08	2524111	103202292	55936371	116	158541											
MLL5	55904	broad.mit.edu	37	chr7	104749673	104749673	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgaaccagaagttcaAtggtaagcccattgtgaagt	10	6	1	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104749673	G	G	104749673	2	3	199	1	0	0	0	0	0	0	0	1	9717	98	4	5		5	MLL5	7	104749673	Silent	SNP	A	TCGA-67-6215-01A-11D-1753-08	1547381	104749673	54388990	117	158542											
PNPLA8	50640	broad.mit.edu	37	chr7	108137971	108137971	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagagctgatgaactggcTtctgagtaagttcaactaat	9	7	2	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108137971	G	G	108137971	3	3	199	1	0	0	0	0	1	0	0	0	12266	1609	56	5	963	5	PNPLA8	7	108137971	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	3388298	108137971	51000692	118	158543											
OR2F1	26211	broad.mit.edu	37	chr7	143656972	143656972	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggctggctggcatgtacaGaatgcattcaaacaagtaat	11	7	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143656972	A	A	143656972	1	1	199	0	1	0	0	0	0	0	0	0	11090	957	33	4		4	OR2F1	7	143656972	5'Flank	SNP	G	TCGA-67-6215-01A-11D-1753-08	35519001	143656972	15481691	119	158544											
SSPO	23145	broad.mit.edu	37	chr7	149492740	149492740	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacctcctgcctggcatcTtgcccctgcccaaggtatca	9	16	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149492740	G	G	149492740	3	3	199	1	0	0	0	0	1	0	0	0	15307	1606	56	5	6686	5	SSPO	7	149492740	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	5835768	149492740	9645923	120	158545											
TUSC3	7991	broad.mit.edu	37	chr8	15508234	15508234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagaatatcaaatactgGcgaactcctggcgctattca	8	9	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15508234	T	T	15508234	3	4	199	1	0	0	0	0	1	0	0	0	16904	1203	42	3	347	3	TUSC3	8	15508234	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08		15508234	130855788	121	158546											
MTMR7	9108	broad.mit.edu	37	chr8	17188790	17188790	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgatttgccattgcattaAgctgcagtggtcagcaaaac	9	10	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17188790	C	C	17188790	3	2	199	1	0	0	0	0	1	0	0	0	10042	86	3	5	1280	5	MTMR7	8	17188790	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	1680556	17188790	129175232	122	158547											
ATP6V1B2	526	broad.mit.edu	37	chr8	20062036	20062036	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaatggtccactagtgatcTtagatcatgttaaggtaata	8	6	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20062036	G	G	20062036	3	3	199	1	0	0	0	0	1	0	0	0	1183	1606	56	5	184	5	ATP6V1B2	8	20062036	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	2873246	20062036	126301986	123	158548											
TEX15	56154	broad.mit.edu	37	chr8	30699489	30699489	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgttttcaaaaagaatacTtataaaagttttgttttaaa	4	3	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30699489	G	G	30699489	1	3	199	0	1	0	0	0	0	0	0	0	15901	1624	56	5		5	TEX15	8	30699489	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	10637453	30699489	115664533	124	158549											
RAB2A	5862	broad.mit.edu	37	chr8	61496896	61496896	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagttgatacagagaattTttctaaatagatgtggttaa	9	2	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61496896	G	G	61496896	1	3	199	0	1	0	0	0	0	0	0	0	13025	1856	64	5		5	RAB2A	8	61496896	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	30797407	61496896	84867126	125	158550											
TTPA	7274	broad.mit.edu	37	chr8	63973764	63973764	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatttaaccaggttggataTcactcatgtatttttagtta	6	6	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63973764	C	C	63973764	1	2	199	0	1	0	0	0	0	0	0	0	16862	1450	50	5		5	TTPA	8	63973764	3'UTR	SNP	T	TCGA-67-6215-01A-11D-1753-08	2476868	63973764	82390258	126	158551											
CPA6	57094	broad.mit.edu	37	chr8	68334688	68334688	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatttctatccagggccaAgtaggccttgctcagaatcc	8	12	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68334688	C	C	68334688	1	2	199	0	1	0	0	0	0	0	0	0	3826	87	3	5		5	CPA6	8	68334688	3'UTR	SNP	A	TCGA-67-6215-01A-11D-1753-08	4360924	68334688	78029334	127	158552											
UBR5	51366	broad.mit.edu	37	chr8	103324705	103324705	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacataggcaccatctacTtttagcacctggaagtatag	8	10	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103324705	G	G	103324705	3	3	199	1	0	0	0	0	1	0	0	0	17031	1606	56	5	6555	5	UBR5	8	103324705	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	34990017	103324705	43039317	128	158553											
COL14A1	7373	broad.mit.edu	37	chr8	121211891	121211891	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgtgaaatgcacttcacTgaaagccaggagacctgagc	10	9	1	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121211891	C	C	121211891	1	2	199	0	1	0	0	0	0	0	0	0	3703	1595	55	5		5	COL14A1	8	121211891	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	17887186	121211891	25152131	129	158554											
TG	7038	broad.mit.edu	37	chr8	134107495	134107495	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagggacattctctggtcTtttacaaatagaaaatgaag	10	5	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134107495	C	C	134107495	1	2	199	0	1	0	0	0	0	0	0	0	15936	1624	56	5		5	TG	8	134107495	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	12895604	134107495	12256527	130	158555											
COL22A1	169044	broad.mit.edu	37	chr8	139662021	139662021	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agggcagtcattgcacacatCctgagagtggggagagaggt	16	7	1	2	rs75768822	byFrequency;by1000genomes	TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139662021	G	G	139662021	3	3	199	1	0	0	0	0	1	0	0	0	3713	869	30	4	1626	4	COL22A1	8	139662021	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	5554526	139662021	6702001	131	158556											
ELAVL2	1993	broad.mit.edu	37	chr9	23704828	23704828	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctttgatatgttctagaAgcaagactgctacatggaaa	8	7	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23704828	C	C	23704828	1	2	199	0	1	0	0	0	0	0	0	0	5092	87	3	5		5	ELAVL2	9	23704828	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08		23704828	117508603	132	158557											
ELAVL2	1993	broad.mit.edu	37	chr9	23765082	23765082	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagtctgactgccatgttAgtttggagttgccgtctgca	11	10	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23765082	G	G	23765082	1	3	199	0	1	0	0	0	0	0	0	0	5092	435	15	5		5	ELAVL2	9	23765082	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	60254	23765082	117448349	133	158558											
NAA35	60560	broad.mit.edu	37	chr9	88611380	88611380	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttccacctaccttccctcGatatgcaaaaataattaaaa	2	12	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88611380	T	T	88611380	3	4	199	1	0	0	0	0	1	0	0	0	10217	1058	37	3	986	3	NAA35	9	88611380	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	64846298	88611380	52602051	134	158559											
GALNT12	79695	broad.mit.edu	37	chr9	101594148	101594148	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaactccggggagccccagAtcggcggtttcgactggagg	17	11	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101594148	C	C	101594148	3	2	199	1	0	0	0	0	1	0	0	0	6272	333	12	5	840	5	GALNT12	9	101594148	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	12982768	101594148	39619283	135	158560											
MUSK	4593	broad.mit.edu	37	chr9	113459421	113459421	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataggaccctggtgaagatTaatttaggtactcttgcact	9	8	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113459421	C	C	113459421	1	2	199	0	1	0	0	0	0	0	0	0	10083	1769	61	5		5	MUSK	9	113459421	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	11865273	113459421	27754010	136	158561											
AKNA	80709	broad.mit.edu	37	chr9	117123857	117123857	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttcataaatatgtaatatTtacatatttggcacacactg	4	7	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117123857	G	G	117123857	1	3	199	0	1	0	0	0	0	0	0	0	463	1856	64	5		5	AKNA	9	117123857	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	3664436	117123857	24089574	137	158562											
LRSAM1	90678	broad.mit.edu	37	chr9	130216903	130216903	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaaagtgggtttcctctaActctatcccatctcctcctc	7	14	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130216903	C	C	130216903	1	2	199	0	1	0	0	0	0	0	0	0	9130	58	2	5		5	LRSAM1	9	130216903	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	13093046	130216903	10996528	138	158563											
ASB6	140459	broad.mit.edu	37	chr9	132402830	132402830	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcgctgaccttcaaagttGagattggccccatgccgcaa	9	13	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132402830	A	A	132402830	2	1	199	1	0	0	0	0	0	0	0	1	1031	1277	45	4		4	ASB6	9	132402830	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	2185927	132402830	8810601	139	158564											
FUT7	2529	broad.mit.edu	37	chr9	139925457	139925457	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagtgccagccaccagtGcgttgcgccagaatttctcc	10	15	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139925457	A	A	139925457	3	1	199	1	0	0	0	0	1	0	0	0	6169	1319	46	4	298	4	FUT7	9	139925457	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	7522627	139925457	1287974	140	158565											
CACNA1B	774	broad.mit.edu	37	chr9	140811791	140811791	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtactggccaggacccaacTttggcatcaccaactttgac	8	13	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140811791	G	G	140811791	3	3	199	1	0	0	0	0	1	0	0	0	2565	1609	56	5	896	5	CACNA1B	9	140811791	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	886334	140811791	401640	141	158566											
ZMYND11	10771	broad.mit.edu	37	chr10	255922	255922	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttattgtcgaaactctaacAgtgggctgcaaaggttcaaa	9	8	2	0	rs138135446	byFrequency	TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	255922	T	T	255922	2	4	199	1	0	0	0	0	0	0	0	1	17832	175	7	5		5	ZMYND11	10	255922	Silent	SNP	A	TCGA-67-6215-01A-11D-1753-08		255922	135278825	142	158567											
BMI1	648	broad.mit.edu	37	chr10	22616781	22616781	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagagcttatctaggaattaAaatgtattaaaattgacttt	7	3	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22616781	G	G	22616781	1	3	199	0	1	0	0	0	0	0	0	0	1461	29	1	5		5	BMI1	10	22616781	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	22360859	22616781	112917966	143	158568											
SVIL	6840	broad.mit.edu	37	chr10	29821735	29821735	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgggacacaggctcacTttgaatgtagagaaccatct	10	9	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29821735	G	G	29821735	3	3	199	1	0	0	0	0	1	0	0	0	15539	1609	56	5	5207	5	SVIL	10	29821735	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	7204954	29821735	105713012	144	158569											
FAM21C	253725	broad.mit.edu	37	chr10	46261127	46261127	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgccatttgcttttctagGataatctttttgggggtaca	9	7	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46261127	A	A	46261127	3	1	199	1	0	0	0	0	1	0	0	0	5589	1188	41	4	1812	4	FAM21C	10	46261127	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	16439392	46261127	89273620	145	158570											
PRF1	5551	broad.mit.edu	37	chr10	72360376	72360376	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagagccctgggcccgccAgttggtgagcgccagaggca	16	14	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72360376	G	G	72360376	3	3	199	1	0	0	0	0	1	0	0	0	12584	188	7	5	1392	5	PRF1	10	72360376	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	26099249	72360376	63174371	146	158571											
BTRC	8945	broad.mit.edu	37	chr10	103310435	103310435	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagttcaagttcctacccTttttgtttctacttctttag	5	9	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103310435	G	G	103310435	1	3	199	0	1	0	0	0	0	0	0	0	1579	1624	56	5		5	BTRC	10	103310435	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	30950059	103310435	32224312	147	158572											
C10orf79	80217	broad.mit.edu	37	chr10	105944850	105944850	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatccattgaaattctcaTtgactgaatcccatgaccct	4	13	1	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105944850	G	G	105944850	3	3	199	1	0	0	0	0	1	0	0	0	1629	1493	52	5	3024	5	C10orf79	10	105944850	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	2634415	105944850	29589897	148	158573											
INPP5F	22876	broad.mit.edu	37	chr10	121579073	121579073	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtatcaacgcgtaaaacTtaacattttacagtgttatt	5	6	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121579073	G	G	121579073	1	3	199	0	1	0	0	0	0	0	0	0	7828	1624	56	5		5	INPP5F	10	121579073	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	15634223	121579073	13955674	149	158574											
RPLP2	6181	broad.mit.edu	37	chr11	812597	812597	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtctctgctgccccaggcTctgcagcccctgctgctggt	11	18	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	812597	C	C	812597	3	2	199	1	0	0	0	0	1	0	0	0	13717	1551	54	5	245	5	RPLP2	11	812597	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08		812597	134193919	150	158575											
TRIM5	85363	broad.mit.edu	37	chr11	5878982	5878982	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataatattcctattagtaaTtcttgttccacttcttcttt	2	8	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5878982	G	G	5878982	1	3	199	0	1	0	0	0	0	0	0	0	16650	1508	52	5		5	TRIM5	11	5878982	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	5066385	5878982	129127534	151	158576											
MRVI1	10335	broad.mit.edu	37	chr11	10625864	10625864	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacttcaggagactatacTtggtacctgagagaagcatg	10	8	2	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10625864	C	C	10625864	1	2	199	0	1	0	0	0	0	0	0	0	9947	1624	56	5		5	MRVI1	11	10625864	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	4746882	10625864	124380652	152	158577											
COPB1	1315	broad.mit.edu	37	chr11	14512166	14512166	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcaacttgcatccttcTcattcaccagaaaatcatgt	4	11	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14512166	G	G	14512166	3	3	199	1	0	0	0	0	1	0	0	0	3760	1551	54	5	2382	5	COPB1	11	14512166	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	3886302	14512166	120494350	153	158578											
CSRP3	8048	broad.mit.edu	37	chr11	19206579	19206579	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggcacagcggaaacagGtcttgtgccaaggctgaggg	16	8	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19206579	A	A	19206579	3	1	199	1	0	0	0	0	1	0	0	0	4003	1261	44	4	164	4	CSRP3	11	19206579	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	4694413	19206579	115799937	154	158579											
ANO3	63982	broad.mit.edu	37	chr11	26677771	26677771	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtacttataatagttatcTttcctgcttgctttcaccat	5	9	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26677771	C	C	26677771	1	2	199	0	1	0	0	0	0	0	0	0	698	1624	56	5		5	ANO3	11	26677771	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	7471192	26677771	108328745	155	158580											
LRP4	4038	broad.mit.edu	37	chr11	46884103	46884103	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgggcatttggagtaaaAtccctccccacacctcgcca	7	14	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46884103	C	C	46884103	1	2	199	0	1	0	0	0	0	0	0	0	9046	116	4	5		5	LRP4	11	46884103	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	20206332	46884103	88122413	156	158581											
OR4A5	81318	broad.mit.edu	37	chr11	51412305	51412305	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgtcaccaagtatgtgaGtaaaaacatgacaaataatg	7	7	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51412305	C	C	51412305	3	2	199	1	0	0	0	0	1	0	0	0	11137	1029	36	4	860	4	OR4A5	11	51412305	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	4528202	51412305	83594211	157	158582											
C11orf48	79081	broad.mit.edu	37	chr11	62439148	62439148	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcctgcgccaaggggtagtGagaccgcgcggcaacagctt	15	12	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62439148	T	T	62439148	1	4	199	0	1	0	0	0	0	0	0	0	1656	1305	45	3		3	C11orf48	11	62439148	5'Flank	SNP	G	TCGA-67-6215-01A-11D-1753-08	11026843	62439148	72567368	158	158583											
CCDC88B	283234	broad.mit.edu	37	chr11	64108420	64108420	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcggatgctcagaggccTtgacggacctgctgcctggc	13	14	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64108420	G	G	64108420	3	3	199	1	0	0	0	0	1	0	0	0	2892	1609	56	5	258	5	CCDC88B	11	64108420	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	1669272	64108420	70898096	159	158584											
GUCY1A2	2977	broad.mit.edu	37	chr11	106579179	106579179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacagggactcacagatgaCagcatagcagcccaaaacaa	9	11	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106579179	A	A	106579179	1	1	199	0	1	0	0	0	0	0	0	0	6958	493	17	3		3	GUCY1A2	11	106579179	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	42470759	106579179	28427337	160	158585											
ATM	472	broad.mit.edu	37	chr11	108236087	108236087	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaacaaagtagctgaacGtgtcttaatgagactacaag	8	7	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108236087	A	A	108236087	3	1	199	1	0	0	0	0	1	0	0	0	1113	1145	40	4	9269	4	ATM	11	108236087	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	1656908	108236087	26770429	161	158586											
TRIM29	23650	broad.mit.edu	37	chr11	119996453	119996453	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcaggtccgccttgcacaTcttctcaacgtggcgcatgc	10	15	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119996453	G	G	119996453	3	3	199	1	0	0	0	0	1	0	0	0	16627	1435	50	5	511	5	TRIM29	11	119996453	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	11760366	119996453	15010063	162	158587											
C11orf63	79864	broad.mit.edu	37	chr11	122817517	122817517	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggtaataaaagcgccatTtttaccaagtaactcttcca	5	9	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122817517	G	G	122817517	1	3	199	0	1	0	0	0	0	0	0	0	1666	1856	64	5		5	C11orf63	11	122817517	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	2821064	122817517	12188999	163	158588											
SLC6A12	6539	broad.mit.edu	37	chr12	301809	301809	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcaaggagaagaggaaAgtggcctgggagaaggaagg	18	4	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	301809	G	G	301809	2	3	199	1	0	0	0	0	0	0	0	1	14789	59	3	5		5	SLC6A12	12	301809	Silent	SNP	A	TCGA-67-6215-01A-11D-1753-08		301809	133550086	164	158589											
KIAA0528	9847	broad.mit.edu	37	chr12	22680702	22680702	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctgagatgactgttgcaGcttcactatacagtaaagga	9	8	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22680702	A	A	22680702	3	1	199	1	0	0	0	0	1	0	0	0	8252	971	34	4	2788	4	KIAA0528	12	22680702	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	22378893	22680702	111171193	165	158590											
ARNTL2	56938	broad.mit.edu	37	chr12	27543284	27543284	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggaaatatttgaattcaAaagcatcttaaaaataagat	6	3	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27543284	C	C	27543284	1	2	199	0	1	0	0	0	0	0	0	0	972	29	1	5		5	ARNTL2	12	27543284	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	4862582	27543284	106308611	166	158591											
SLC2A13	114134	broad.mit.edu	37	chr12	40224046	40224046	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaactgaaaaatgaaaagAgttaccgtcatgttggcaga	10	5	1	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40224046	G	G	40224046	1	3	199	0	1	0	0	0	0	0	0	0	14656	319	11	5		5	SLC2A13	12	40224046	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	12680762	40224046	93627849	167	158592											
KRT4	3851	broad.mit.edu	37	chr12	53202418	53202418	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctgttcacagacatcaAaagcagagccccagagccag	8	14	3	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53202418	G	G	53202418	1	3	199	0	1	0	0	0	0	0	0	0	8548	29	1	5		5	KRT4	12	53202418	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	12978372	53202418	80649477	168	158593											
SP1	6667	broad.mit.edu	37	chr12	53805023	53805023	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcagtggcaatggcttctGagatcaggcacccggggcca	13	11	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53805023	A	A	53805023	2	1	199	1	0	0	0	0	0	0	0	1	15073	1285	45	4		4	SP1	12	53805023	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	602605	53805023	80046872	169	158594											
HNRNPA1	3178	broad.mit.edu	37	chr12	54674520	54674520	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggctggcagatacgttcGtcagcttgctcctttctgcc	11	12	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54674520	A	A	54674520	1	1	199	0	1	0	0	0	0	0	0	0	7324	1160	40	4		4	HNRNPA1	12	54674520	5'UTR	SNP	G	TCGA-67-6215-01A-11D-1753-08	869497	54674520	79177375	170	158595											
OR6C2	341416	broad.mit.edu	37	chr12	55846627	55846627	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactcattatcaccctagtTtgtgtgattctgtcctactt	6	11	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55846627	G	G	55846627	2	3	199	1	0	0	0	0	0	0	0	1	11285	1828	64	5		5	OR6C2	12	55846627	Silent	SNP	T	TCGA-67-6215-01A-11D-1753-08	1172107	55846627	78005268	171	158596											
KRR1	11103	broad.mit.edu	37	chr12	75897801	75897801	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggcaaaaatctctcccaActttgtgatcgtaattcaga	7	9	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75897801	T	T	75897801	3	4	199	1	0	0	0	0	1	0	0	0	8517	40	2	5	447	5	KRR1	12	75897801	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	20051174	75897801	57954094	172	158597											
CCDC41	51134	broad.mit.edu	37	chr12	94763661	94763661	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagttcatatctgaaaataAgcagcagcagcagcagcaag	10	8	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94763661	G	G	94763661	1	3	199	0	1	0	0	0	0	0	0	0	2840	87	3	5		5	CCDC41	12	94763661	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	18865860	94763661	39088234	173	158598											
UTP20	27340	broad.mit.edu	37	chr12	101723073	101723073	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacttggatttgtctaaagTtcttcctttaggtcgtcagc	9	8	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101723073	G	G	101723073	3	3	199	1	0	0	0	0	1	0	0	0	17226	1725	60	5	3369	5	UTP20	12	101723073	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	6959412	101723073	32128822	174	158599											
NT5DC3	51559	broad.mit.edu	37	chr12	104181289	104181289	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatccagtaagcttcaaaAattcatataaattaccctgt	3	10	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104181289	C	C	104181289	3	2	199	1	0	0	0	0	1	0	0	0	10787	14	1	5	544	5	NT5DC3	12	104181289	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	2458216	104181289	29670606	175	158600											
HSP90B1	7184	broad.mit.edu	37	chr12	104336857	104336857	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcttaattttgtaggctgaAtcttctccatttgttgagcg	8	7	3	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104336857	T	T	104336857	3	4	199	1	0	0	0	0	1	0	0	0	7472	98	4	5	1700	5	HSP90B1	12	104336857	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	155568	104336857	29515038	176	158601											
GLT8D2	83468	broad.mit.edu	37	chr12	104388397	104388397	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctgtgtcactggccaCtgggtagtttgttgtttttg	11	9	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104388397	T	T	104388397	1	4	199	0	1	0	0	0	0	0	0	0	6534	580	20	4		4	GLT8D2	12	104388397	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	51540	104388397	29463498	177	158602											
ALDH1L2	160428	broad.mit.edu	37	chr12	105420361	105420361	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagattgtttaactccgccaAatggggccgccacatctgtc	9	13	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105420361	C	C	105420361	3	2	199	1	0	0	0	0	1	0	0	0	495	14	1	5	101	5	ALDH1L2	12	105420361	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	1031964	105420361	28431534	178	158603											
TAOK3	51347	broad.mit.edu	37	chr12	118684133	118684133	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtccctggaggagatctAtctcttctccctgcccatta	7	14	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118684133	C	C	118684133	1	2	199	0	1	0	0	0	0	0	0	0	15668	464	16	5		5	TAOK3	12	118684133	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	13263772	118684133	15167762	179	158604											
RNF17	56163	broad.mit.edu	37	chr13	25363414	25363414	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaaaagatacagttttctTtctaaaatcttactgttcag	4	8	4	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25363414	G	G	25363414	1	3	199	0	1	0	0	0	0	0	0	0	13572	1856	64	5		5	RNF17	13	25363414	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08		25363414	89806464	180	158605											
PABPC3	5042	broad.mit.edu	37	chr13	25670991	25670991	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagttcgggcccgccttaAgtgtgaaagtaatgaccgat	12	9	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25670991	G	G	25670991	3	3	199	1	0	0	0	0	1	0	0	0	11459	72	3	5	657	5	PABPC3	13	25670991	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	307577	25670991	89498887	181	158606											
USP12	219333	broad.mit.edu	37	chr13	27690659	27690659	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatggatacttacattgacTaatccaaaatagtgctcatt	5	8	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27690659	A	A	27690659	3	1	199	1	0	0	0	0	1	0	0	0	17169	1519	53	5	1021	5	USP12	13	27690659	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	2019668	27690659	87479219	182	158607											
N4BP2L2	10443	broad.mit.edu	37	chr13	33091950	33091950	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagctaatttaatgattatTtgtgacacagacacgattat	6	5	0	3	rs138840363		TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33091950	G	G	33091950	3	3	199	1	0	0	0	0	1	0	0	0	10206	1841	64	5	1875	5	N4BP2L2	13	33091950	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	5401291	33091950	82077928	183	158608											
LRCH1	23143	broad.mit.edu	37	chr13	47224374	47224374	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttgaagttccaatggaaTtgtgccattttgtatcactg	10	6	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47224374	A	A	47224374	3	1	199	1	0	0	0	0	1	0	0	0	9019	1490	52	5	352	5	LRCH1	13	47224374	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	14132424	47224374	67945504	184	158609											
RCBTB2	1102	broad.mit.edu	37	chr13	49070519	49070519	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcctgatttacagttgctcActcagccactcagagatgat	7	11	3	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49070519	T	T	49070519	1	4	199	0	1	0	0	0	0	0	0	0	13280	174	6	5		5	RCBTB2	13	49070519	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	1846145	49070519	66099359	185	158610											
CDC16	8881	broad.mit.edu	37	chr13	115004507	115004507	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagctaggtgccatgtaAgtatgctcataatttcattt	8	7	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115004507	C	C	115004507	1	2	199	0	1	0	0	0	0	0	0	0	3088	87	3	5		5	CDC16	13	115004507	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	65933988	115004507	165371	186	158611											
LRRC16B	90668	broad.mit.edu	37	chr14	24529673	24529673	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgcacaggactctgggaGctcagctgggcattcaagaa	14	9	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24529673	A	A	24529673	1	1	199	0	1	0	0	0	0	0	0	0	9059	986	34	4		4	LRRC16B	14	24529673	Intron	SNP	G	TCGA-67-6215-01A-11D-1753-08		24529673	82819867	187	158612											
C14orf135	64430	broad.mit.edu	37	chr14	60616735	60616735	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaccaatatataatgccaAtatataactagtaaacattc	2	8	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60616735	C	C	60616735	1	2	199	0	1	0	0	0	0	0	0	0	1758	116	4	5		5	C14orf135	14	60616735	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	36087062	60616735	46732805	188	158613											
DPF3	8110	broad.mit.edu	37	chr14	73141105	73141105	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatttaaaacattccaattTcaggcttacatgagtttcaa	4	8	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73141105	G	G	73141105	1	3	199	0	1	0	0	0	0	0	0	0	4758	1798	62	5		5	DPF3	14	73141105	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	12524370	73141105	34208435	189	158614											
SCG3	29106	broad.mit.edu	37	chr15	52011777	52011777	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaaaacataatatagcTtaaaacacttctaattctgt	3	7	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52011777	G	G	52011777	1	3	199	0	1	0	0	0	0	0	0	0	14004	1624	56	5		5	SCG3	15	52011777	3'UTR	SNP	T	TCGA-67-6215-01A-11D-1753-08		52011777	50519615	190	158615											
KIAA1370	56204	broad.mit.edu	37	chr15	52874472	52874472	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagccgtacgtctctatggAggtagatctttccagattta	11	8	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52874472	T	T	52874472	3	4	199	1	0	0	0	0	1	0	0	0	8296	304	11	5	124	5	KIAA1370	15	52874472	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	862695	52874472	49656920	191	158616											
ALDH1A2	8854	broad.mit.edu	37	chr15	58306126	58306126	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtcccctttctgaagcaTccatccttctccacactgaa	5	16	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58306126	C	C	58306126	3	2	199	1	0	0	0	0	1	0	0	0	491	1435	50	5	1307	5	ALDH1A2	15	58306126	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	5431654	58306126	44225266	192	158617											
PLEKHO2	80301	broad.mit.edu	37	chr15	65157638	65157638	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggcacagtgcaggtcTcagtgaatggcatggatgac	13	10	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65157638	C	C	65157638	3	2	199	1	0	0	0	0	1	0	0	0	12180	1551	54	5	1046	5	PLEKHO2	15	65157638	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	6851512	65157638	37373754	193	158618											
TMEM202	338949	broad.mit.edu	37	chr15	72699180	72699180	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactctcatactctttttcTtatctctttgctcttcttca	2	12	7	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72699180	G	G	72699180	1	3	199	0	1	0	0	0	0	0	0	0	16250	1624	56	5		5	TMEM202	15	72699180	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	7541542	72699180	29832212	194	158619											
IL16	3603	broad.mit.edu	37	chr15	81585392	81585392	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccaggtaagaggatgggTccacaggttgagtgtttcca	15	7	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81585392	G	G	81585392	1	3	199	0	1	0	0	0	0	0	0	0	7703	1682	58	5		5	IL16	15	81585392	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	8886212	81585392	20946000	195	158620											
IGF1R	3480	broad.mit.edu	37	chr15	99485982	99485982	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgtgattaatcatcccttActgtctccaccttataaaat	3	11	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99485982	T	T	99485982	1	4	199	0	1	0	0	0	0	0	0	0	7641	406	14	5		5	IGF1R	15	99485982	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	17900590	99485982	3045410	196	158621											
ABCC6	368	broad.mit.edu	37	chr16	16256971	16256971	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgctgccctggaacgtctCagccatgtgggagcagacag	14	11	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16256971	A	A	16256971	4	1	199	1	0	0	0	0	0	1	0	0	57	835	29	3	1158	3	ABCC6	16	16256971	Nonsense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08		16256971	74097782	197	158622											
TNRC6A	27327	broad.mit.edu	37	chr16	24800787	24800787	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactatcatggcttcagggaAcacaggtggtgaaaaagatg	12	7	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24800787	C	C	24800787	3	2	199	1	0	0	0	0	1	0	0	0	16463	43	2	5	846	5	TNRC6A	16	24800787	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	8543816	24800787	65553966	198	158623											
HS3ST4	9951	broad.mit.edu	37	chr16	26043768	26043768	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaagtaaaaCaaaattccacatttttataa	1	4	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26043768	A	A	26043768	1	1	199	0	1	0	0	0	0	0	0	0	7434	493	17	3		3	HS3ST4	16	26043768	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	1242981	26043768	64310985	199	158624											
TAOK2	9344	broad.mit.edu	37	chr16	29999087	29999087	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgtctggcacgggccaGccagggtttagcatcccact	13	14	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29999087	T	T	29999087	3	4	199	1	0	0	0	0	1	0	0	0	15667	971	34	3	3552	3	TAOK2	16	29999087	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	3955319	29999087	60355666	200	158625											
SHCBP1	79801	broad.mit.edu	37	chr16	46637423	46637423	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacatatcacgtgtgagAgtttggttgtgtgtcttcca	10	6	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46637423	T	T	46637423	1	4	199	0	1	0	0	0	0	0	0	0	14387	319	11	5		5	SHCBP1	16	46637423	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	16638336	46637423	43717330	201	158626											
ADCY7	113	broad.mit.edu	37	chr16	50339601	50339601	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgcctggtggcccagccTtgttccttccccctgcctgc	9	19	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50339601	G	G	50339601	1	3	199	0	1	0	0	0	0	0	0	0	299	1624	56	5		5	ADCY7	16	50339601	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	3702178	50339601	40015152	202	158627											
CYLD	1540	broad.mit.edu	37	chr16	50783950	50783950	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagaggttcagcctgtttaAaaacagaaacagactaagta	10	6	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50783950	C	C	50783950	3	2	199	1	0	0	0	0	1	0	0	0	4176	14	1	5	343	5	CYLD	16	50783950	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	444349	50783950	39570803	203	158628											
WWOX	51741	broad.mit.edu	37	chr16	78859458	78859458	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaggtggccccagagGtctgtgtgccattgcccagg	14	11	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78859458	A	A	78859458	1	1	199	0	1	0	0	0	0	0	0	0	17541	1276	44	4		4	WWOX	16	78859458	Intron	SNP	G	TCGA-67-6215-01A-11D-1753-08	28075508	78859458	11495295	204	158629											
GALNS	2588	broad.mit.edu	37	chr16	88898418	88898418	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgactcacctggcctgcagtGacgtgccctggccaccatgc	11	16	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88898418	A	A	88898418	2	1	199	1	0	0	0	0	0	0	0	1	6268	1277	45	4		4	GALNS	16	88898418	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	10038960	88898418	1456335	205	158630											
MYO1C	4641	broad.mit.edu	37	chr17	1369047	1369047	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattcagccgtggggcgacCtgtgggggcggagagagacg	20	8	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1369047	T	T	1369047	1	4	199	0	1	0	0	0	0	0	0	0	10164	695	24	4		4	MYO1C	17	1369047	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08		1369047	79826163	206	158631											
BCL6B	255877	broad.mit.edu	37	chr17	6927172	6927172	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttctcatcgcctgcaggtTcgaggggtggggcctggggc	18	10	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6927172	C	C	6927172	1	2	199	0	1	0	0	0	0	0	0	0	1382	1798	62	5		5	BCL6B	17	6927172	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	5558125	6927172	74268038	207	158632											
GAS7	8522	broad.mit.edu	37	chr17	9828912	9828912	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgctctgtgagggctttcCgggcctggggtccaaggaca	16	12	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9828912	T	T	9828912	3	4	199	1	0	0	0	0	1	0	0	0	6312	652	23	4	427	4	GAS7	17	9828912	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	2901740	9828912	71366298	208	158633											
MYH1	4619	broad.mit.edu	37	chr17	10409441	10409441	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaccatgcgagtttatacTttaaaaaatgtactgttttc	7	6	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10409441	G	G	10409441	1	3	199	0	1	0	0	0	0	0	0	0	10123	1624	56	5		5	MYH1	17	10409441	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	580529	10409441	70785769	209	158634											
NCOR1	9611	broad.mit.edu	37	chr17	15938112	15938112	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcttcccaggcccaccCtggcgtctgcctatggtaat	9	16	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15938112	G	G	15938112	3	3	199	1	0	0	0	0	1	0	0	0	10330	681	24	4	228	4	NCOR1	17	15938112	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	5528671	15938112	65257098	210	158635											
NCOR1	9611	broad.mit.edu	37	chr17	16062117	16062117	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacaatactgcggtgtttcTgctccacaggaggaggggac	15	9	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16062117	C	C	16062117	3	2	199	1	0	0	0	0	1	0	0	0	10330	1580	55	5	6797	5	NCOR1	17	16062117	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	124005	16062117	65133093	211	158636											
PIPOX	51268	broad.mit.edu	37	chr17	27381507	27381507	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccagagaaactgctttcaTtgctgtagagttccatggct	10	10	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27381507	G	G	27381507	1	3	199	0	1	0	0	0	0	0	0	0	12038	1508	52	5		5	PIPOX	17	27381507	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	11319390	27381507	53813703	212	158637											
C17orf104	284071	broad.mit.edu	37	chr17	42744680	42744680	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatcaaactcagcaacatcTtcaggaggtatcaatttaaa	5	8	5	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42744680	G	G	42744680	2	3	199	1	0	0	0	0	0	0	0	1	1865	1596	56	5		5	C17orf104	17	42744680	Silent	SNP	T	TCGA-67-6215-01A-11D-1753-08	15363173	42744680	38450530	213	158638											
GFAP	2670	broad.mit.edu	37	chr17	42988815	42988815	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcgcatctgcctctccaGggactcgttctgtgggatgg	13	13	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42988815	A	A	42988815	2	1	199	1	0	0	0	0	0	0	0	1	6401	991	35	4		4	GFAP	17	42988815	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	244135	42988815	38206395	214	158639											
LRRC37A2	474170	broad.mit.edu	37	chr17	44626586	44626586	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcacaaggggctttttcaTccttaggagacctgagtcct	9	11	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44626586	C	C	44626586	3	2	199	1	0	0	0	0	1	0	0	0	9079	1435	50	5	4115	5	LRRC37A2	17	44626586	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	1637771	44626586	36568624	215	158640											
C17orf57	124989	broad.mit.edu	37	chr17	45469011	45469011	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagggtcaatttgttatttTtttcttagaaaaatgactaa	8	3	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45469011	G	G	45469011	1	3	199	0	1	0	0	0	0	0	0	0	1881	1856	64	5		5	C17orf57	17	45469011	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	842425	45469011	35726199	216	158641											
TTLL6	284076	broad.mit.edu	37	chr17	46862281	46862281	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagagctcggctcactacTtaccacagtgccagtgaata	8	14	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46862281	G	G	46862281	1	3	199	0	1	0	0	0	0	0	0	0	16857	1624	56	5		5	TTLL6	17	46862281	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	1393270	46862281	34332929	217	158642											
TOB1	10140	broad.mit.edu	37	chr17	48941171	48941171	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accactctctttggatgcttGttcaatcactgggtccactt	7	12	3	0	rs142442521	by1000genomes	TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48941171	A	A	48941171	4	1	199	1	0	0	0	0	0	1	0	0	16470	1386	48	4	833	4	TOB1	17	48941171	Nonsense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	2078890	48941171	32254039	218	158643											
ANKFN1	162282	broad.mit.edu	37	chr17	54403763	54403763	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtgaatatggagcttTcttaattactgattattttt	6	4	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54403763	C	C	54403763	1	2	199	0	1	0	0	0	0	0	0	0	625	1798	62	5		5	ANKFN1	17	54403763	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	5462592	54403763	26791447	219	158644											
ANKFN1	162282	broad.mit.edu	37	chr17	54517778	54517778	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatgcacaatcacaggacTtacaatggtaaatgtcccca	8	10	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54517778	C	C	54517778	3	2	199	1	0	0	0	0	1	0	0	0	625	1609	56	5	1040	5	ANKFN1	17	54517778	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	114015	54517778	26677432	220	158645											
TBX4	9496	broad.mit.edu	37	chr17	59543207	59543207	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccccagctacaaggtaaaAgtcacaggcatgaaccccaa	7	13	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59543207	C	C	59543207	3	2	199	1	0	0	0	0	1	0	0	0	15782	69	3	5	319	5	TBX4	17	59543207	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	5025429	59543207	21652003	221	158646											
DSG4	147409	broad.mit.edu	37	chr18	28979256	28979256	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggattatgaacaagcaCctaacattcagcttagtatc	7	9	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28979256	T	T	28979256	3	4	199	1	0	0	0	0	1	0	0	0	4819	507	18	4	1061	4	DSG4	18	28979256	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08		28979256	49097992	222	158647											
MCART2	147407	broad.mit.edu	37	chr18	29340050	29340050	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttaatgggacctcgaaggCcgaaaaacaagacattgctg	10	10	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29340050	T	T	29340050	3	4	199	1	0	0	0	0	1	0	0	0	9463	739	26	4	322	4	MCART2	18	29340050	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	360794	29340050	48737198	223	158648											
KIAA1632	57724	broad.mit.edu	37	chr18	43462310	43462310	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagataagtccagtgcTtacagaaaagattaaatggc	10	5	0	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43462310	G	G	43462310	3	3	199	1	0	0	0	0	1	0	0	0	8319	1609	56	5	2348	5	KIAA1632	18	43462310	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	14122260	43462310	34614938	224	158649											
KIAA1632	57724	broad.mit.edu	37	chr18	43534828	43534828	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaccaggccttgtttgtcTtctttactattctgagtttc	6	10	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43534828	G	G	43534828	3	3	199	1	0	0	0	0	1	0	0	0	8319	1606	56	5	7371	5	KIAA1632	18	43534828	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	72518	43534828	34542420	225	158650											
MYO5B	4645	broad.mit.edu	37	chr18	47462675	47462675	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagcggacatagtgaggtgtCgtggcattcagggtctccat	14	9	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47462675	G	G	47462675	2	3	199	1	0	0	0	0	0	0	0	1	10173	871	31	4		4	MYO5B	18	47462675	Silent	SNP	C	TCGA-67-6215-01A-11D-1753-08	3927847	47462675	30614573	226	158651											
SERPINB5	5268	broad.mit.edu	37	chr18	61160237	61160237	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaacgaccagaccaaaaTccttgtggttaatgctgcct	9	10	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61160237	G	G	61160237	3	3	199	1	0	0	0	0	1	0	0	0	14217	1435	50	5	490	5	SERPINB5	18	61160237	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	13697562	61160237	16917011	227	158652											
ATP8B3	148229	broad.mit.edu	37	chr19	1785723	1785723	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtccttggggcaagcagaAgctcttgggattgggtgggg	18	7	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1785723	T	T	1785723	1	4	199	0	1	0	0	0	0	0	0	0	1200	87	3	5		5	ATP8B3	19	1785723	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08		1785723	57343260	228	158653											
KLF16	83855	broad.mit.edu	37	chr19	1854696	1854696	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtccggtggtggcgggccAgctcgtcggagcgggcgaac	20	12	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1854696	G	G	1854696	3	3	199	1	0	0	0	0	1	0	0	0	8415	188	7	5	241	5	KLF16	19	1854696	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	68973	1854696	57274287	229	158654											
SAFB2	9667	broad.mit.edu	37	chr19	5604572	5604572	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcccagggattccaagagGaggtttgaaaattcacttta	9	9	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5604572	A	A	5604572	1	1	199	0	1	0	0	0	0	0	0	0	13918	1189	41	4		4	SAFB2	19	5604572	Intron	SNP	G	TCGA-67-6215-01A-11D-1753-08	3749876	5604572	53524411	230	158655											
TMEM146	257062	broad.mit.edu	37	chr19	5759289	5759289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgattacaacactttacaAgagctgggcgcggtggctca	13	10	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5759289	G	G	5759289	1	3	199	0	1	0	0	0	0	0	0	0	16183	87	3	5		5	TMEM146	19	5759289	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	154717	5759289	53369694	231	158656											
CYP4F8	11283	broad.mit.edu	37	chr19	15739364	15739364	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtctgtaacatcaacatcTtcgcaatccatcacaacccc	3	15	4	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15739364	G	G	15739364	3	3	199	1	0	0	0	0	1	0	0	0	4224	1609	56	5	1310	5	CYP4F8	19	15739364	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	9980075	15739364	43389619	232	158657											
PIK3R2	5296	broad.mit.edu	37	chr19	18279608	18279608	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttggtacgtgggcaagatCaaccgcacgcaggcagagga	14	10	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18279608	T	T	18279608	2	4	199	1	0	0	0	0	0	0	0	1	12014	816	29	4		4	PIK3R2	19	18279608	Silent	SNP	C	TCGA-67-6215-01A-11D-1753-08	2540244	18279608	40849375	233	158658											
SFRS14	10147	broad.mit.edu	37	chr19	19129864	19129864	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taccatcagagtgacccaaaTtttgccatatactccatgag	6	11	1	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19129864	G	G	19129864	1	3	199	0	1	0	0	0	0	0	0	0	14283	1508	52	5		5	SFRS14	19	19129864	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	850256	19129864	39999119	234	158659											
NCAN	1463	broad.mit.edu	37	chr19	19338102	19338102	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcaggttctgctggtgGcaagagctccccagagccct	13	12	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19338102	A	A	19338102	3	1	199	1	0	0	0	0	1	0	0	0	10299	1203	42	4	1699	4	NCAN	19	19338102	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08	208238	19338102	39790881	235	158660											
PSG2	5670	broad.mit.edu	37	chr19	43576000	43576000	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttcccattaattgtccaAgaatactgtgccggtgggtt	9	9	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43576000	G	G	43576000	2	3	199	1	0	0	0	0	0	0	0	1	12761	59	3	5		5	PSG2	19	43576000	Silent	SNP	A	TCGA-67-6215-01A-11D-1753-08	24237898	43576000	15552983	236	158661											
PSG2	5670	broad.mit.edu	37	chr19	43576051	43576051	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaagacaagtagaggttAtctcctgaacggtaattggt	11	6	1	3	rs1058095		TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43576051	C	C	43576051	3	2	199	1	0	0	0	0	1	0	0	0	12761	446	16	5	250	5	PSG2	19	43576051	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	51	43576051	15552932	237	158662											
ZNF221	7638	broad.mit.edu	37	chr19	44468913	44468913	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcattgcacttctgatgAagctcatgaaaatctgcgtg	8	8	4	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44468913	C	C	44468913	1	2	199	0	1	0	0	0	0	0	0	0	17901	261	9	5		5	ZNF221	19	44468913	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	892862	44468913	14660070	238	158663											
SPHK2	56848	broad.mit.edu	37	chr19	49132515	49132515	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaggcagctctacacTcacccgtctccgaaggggcc	9	18	3	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49132515	C	C	49132515	3	2	199	1	0	0	0	0	1	0	0	0	15165	1551	54	5	1472	5	SPHK2	19	49132515	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	4663602	49132515	9996468	239	158664											
LHB	3972	broad.mit.edu	37	chr19	49519935	49519935	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctccctggatgcccatgCcccgcccatgctcagcagca	10	19	1	0	rs146354951	byFrequency	TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49519935	T	T	49519935	3	4	199	1	0	0	0	0	1	0	0	0	8833	739	26	4	381	4	LHB	19	49519935	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	387420	49519935	9609048	240	158665											
LILRB3	11025	broad.mit.edu	37	chr19	54744672	54744672	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcagggcctgtgcagagCctgggtccctgactgaaccc	14	15	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54744672	T	T	54744672	1	4	199	0	1	0	0	0	0	0	0	0	8864	754	26	4		4	LILRB3	19	54744672	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	5224737	54744672	4384311	241	158666											
NLRP7	199713	broad.mit.edu	37	chr19	55445116	55445116	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttttccaacctgcaaaaAtatgaaacaaatggtagaag	7	7	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55445116	C	C	55445116	1	2	199	0	1	0	0	0	0	0	0	0	10577	116	4	5		5	NLRP7	19	55445116	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	700444	55445116	3683867	242	158667											
DEFB125	245938	broad.mit.edu	37	chr20	76828	76828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acctagaggatataacattgGattatagtgatgtggactct	10	5	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76828	T	T	76828	3	4	199	1	0	0	0	0	1	0	0	0	4450	1174	41	3	247	3	DEFB125	20	76828	Missense_Mutation	SNP	G	TCGA-67-6215-01A-11D-1753-08		76828	62948692	243	158668											
TMC2	117532	broad.mit.edu	37	chr20	2593029	2593029	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgacccctgttctcagTtctttgttattccctccttg	7	12	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2593029	G	G	2593029	1	3	199	0	1	0	0	0	0	0	0	0	16108	1740	60	5		5	TMC2	20	2593029	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	2516201	2593029	60432491	244	158669											
GPCPD1	56261	broad.mit.edu	37	chr20	5548021	5548021	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagcacatagtctacacaTtaaatttaacagtcatcccc	3	12	2	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5548021	G	G	5548021	1	3	199	0	1	0	0	0	0	0	0	0	6668	1508	52	5		5	GPCPD1	20	5548021	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	2954992	5548021	57477499	245	158670											
JAG1	182	broad.mit.edu	37	chr20	10626571	10626571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgttgaagtgggatccctcCaacatgacccatacatccca	7	14	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10626571	A	A	10626571	1	1	199	0	1	0	0	0	0	0	0	0	8004	609	21	2		2	JAG1	20	10626571	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	5078550	10626571	52398949	246	158671											
C20orf7	79133	broad.mit.edu	37	chr20	13775603	13775603	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggttggtaatccacttTttaaaaaccatatgttataa	5	5	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13775603	C	C	13775603	1	2	199	0	1	0	0	0	0	0	0	0	2137	1856	64	5		5	C20orf7	20	13775603	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	3149032	13775603	49249917	247	158672											
ITCH	83737	broad.mit.edu	37	chr20	33049816	33049816	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaagatttctgctatgtTtattgacatttgtagcttct	6	6	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33049816	G	G	33049816	1	3	199	0	1	0	0	0	0	0	0	0	7938	1856	64	5		5	ITCH	20	33049816	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	19274213	33049816	29975704	248	158673											
ZNF831	128611	broad.mit.edu	37	chr20	57828930	57828930	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctccccccccactttttTtttcctttgcactttgttgc	3	16	0	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57828930	G	G	57828930	1	3	199	0	1	0	0	0	0	0	0	0	18314	1856	64	5		5	ZNF831	20	57828930	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	24779114	57828930	5196590	249	158674											
TIAM1	7074	broad.mit.edu	37	chr21	32492740	32492740	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcttcacgcctaacccaAatgacttcctcgcttgcgct	6	15	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32492740	C	C	32492740	3	2	199	1	0	0	0	0	1	0	0	0	16013	10	1	5	57	5	TIAM1	21	32492740	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08		32492740	15637155	250	158675											
SLC37A1	54020	broad.mit.edu	37	chr21	43945903	43945903	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtacagagccttcatttTtattttgacatttctgctgt	7	8	2	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43945903	G	G	43945903	3	3	199	1	0	0	0	0	1	0	0	0	14711	1841	64	5	80	5	SLC37A1	21	43945903	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	11453163	43945903	4183992	251	158676											
PWP2	5822	broad.mit.edu	37	chr21	45540652	45540652	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccatgcagacaggcaggcTccttgatgtaagcaccctga	11	12	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45540652	C	C	45540652	3	2	199	1	0	0	0	0	1	0	0	0	12952	1551	54	5	1524	5	PWP2	21	45540652	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	1594749	45540652	2589243	252	158677											
MICAL3	57553	broad.mit.edu	37	chr22	18389374	18389374	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgactgccccgtttgtccaAttttgcccagagggctttgg	12	11	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18389374	C	C	18389374	3	2	199	1	0	0	0	0	1	0	0	0	9664	98	4	5	6664	5	MICAL3	22	18389374	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08		18389374	32915192	253	158678											
ZNF74	7625	broad.mit.edu	37	chr22	20754938	20754938	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggaatcggtgagtttcaAggatgtggctgtggacttca	14	6	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20754938	C	C	20754938	3	2	199	1	0	0	0	0	1	0	0	0	18256	72	3	5	147	5	ZNF74	22	20754938	Missense_Mutation	SNP	A	TCGA-67-6215-01A-11D-1753-08	2365564	20754938	30549628	254	158679											
THOC5	8563	broad.mit.edu	37	chr22	29935171	29935171	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgatgaggttggtgaagtTtaaactatccagtgtgattt	11	4	0	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29935171	G	G	29935171	1	3	199	0	1	0	0	0	0	0	0	0	15991	1856	64	5		5	THOC5	22	29935171	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	9180233	29935171	21369395	255	158680											
SF3A1	10291	broad.mit.edu	37	chr22	30731792	30731792	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggagctcggagccaatcaAgaactatgctctgctatccc	10	12	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30731792	C	C	30731792	1	2	199	0	1	0	0	0	0	0	0	0	14259	87	3	5		5	SF3A1	22	30731792	Intron	SNP	A	TCGA-67-6215-01A-11D-1753-08	796621	30731792	20572774	256	158681											
EFCAB6	64800	broad.mit.edu	37	chr22	43950647	43950647	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataacaaaactgcaagcattTtaaaaatagagaacagtctt	5	6	1	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43950647	G	G	43950647	1	3	199	0	1	0	0	0	0	0	0	0	4979	1856	64	5		5	EFCAB6	22	43950647	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	13218855	43950647	7353919	257	158682											
PIR	8544	broad.mit.edu	37	chrX	15443916	15443916	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaacaagagttcttagaaCtttgtgctgagtttcagaaa	8	5	2	4			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15443916	T	T	15443916	1	4	199	0	1	0	0	0	0	0	0	0	12039	580	20	4		4	PIR	23	15443916	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08		15443916	139826644	258	158683											
CXorf58	254158	broad.mit.edu	37	chrX	23956633	23956633	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatattttattctgtgtgaTttttctgtttttaatacaaa	4	3	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23956633	G	G	23956633	1	3	199	0	1	0	0	0	0	0	0	0	4147	1508	52	5		5	CXorf58	23	23956633	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	8512717	23956633	131313927	259	158684											
BCOR	54880	broad.mit.edu	37	chrX	39921444	39921444	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtctcgccagcgttcttaTtgacaataagtctccgtgct	10	11	3	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39921444	C	C	39921444	3	2	199	1	0	0	0	0	1	0	0	0	1391	1493	52	5	915	5	BCOR	23	39921444	Missense_Mutation	SNP	T	TCGA-67-6215-01A-11D-1753-08	15964811	39921444	115349116	260	158685											
ZNF673	55634	broad.mit.edu	37	chrX	46322525	46322525	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgttctgtactgaggggCagatagctgtgtgcatgggg	17	5	1	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46322525	A	A	46322525	1	1	199	0	1	0	0	0	0	0	0	0	18207	725	25	3		3	ZNF673	23	46322525	Intron	SNP	C	TCGA-67-6215-01A-11D-1753-08	6401081	46322525	108948035	261	158686											
DGKK	139189	broad.mit.edu	37	chrX	50131629	50131629	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagcctaggggcaaaaGgagttcttagccctggaatc	13	10	1	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50131629	T	T	50131629	1	4	199	0	1	0	0	0	0	0	0	0	4512	1015	35	2		2	DGKK	23	50131629	Intron	SNP	G	TCGA-67-6215-01A-11D-1753-08	3809104	50131629	105138931	262	158687											
ZXDA	7789	broad.mit.edu	37	chrX	57935082	57935082	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcattctgtctctggctGgtaagttcactgctgggtgt	12	8	4	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57935082	T	T	57935082	2	4	199	1	0	0	0	0	0	0	0	1	18379	1335	47	2		2	ZXDA	23	57935082	Silent	SNP	G	TCGA-67-6215-01A-11D-1753-08	7803453	57935082	97335478	263	158688											
ATRX	546	broad.mit.edu	37	chrX	76872168	76872168	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattcgtgttttggaggcaAgaattttgttaatgctgtat	10	3	0	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76872168	G	G	76872168	2	3	199	1	0	0	0	0	0	0	0	1	1212	69	3	5		5	ATRX	23	76872168	Silent	SNP	A	TCGA-67-6215-01A-11D-1753-08	18937086	76872168	78398392	264	158689											
UTP14A	10813	broad.mit.edu	37	chrX	129059058	129059058	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaccccaaataatcgcCctgatgcccctaaggagaag	10	12	0	3			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129059058	T	T	129059058	3	4	199	1	0	0	0	0	1	0	0	0	17222	623	22	4	1682	4	UTP14A	23	129059058	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	52186890	129059058	26211502	265	158690											
SLC25A14	9016	broad.mit.edu	37	chrX	129480838	129480838	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcttgagctttggattttGtgttcatttggttataagtg	11	3	2	1			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129480838	T	T	129480838	1	4	199	0	1	0	0	0	0	0	0	0	14590	1392	48	3		3	SLC25A14	23	129480838	Intron	SNP	G	TCGA-67-6215-01A-11D-1753-08	421780	129480838	25789722	266	158691											
RENBP	5973	broad.mit.edu	37	chrX	153209152	153209152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgccacccgggcatacCgcagcaagaactcaccacct	10	16	1	1	rs34430440	byFrequency	TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153209152	A	A	153209152	3	1	199	1	0	0	0	0	1	0	0	0	13333	652	23	1	1003	1	RENBP	23	153209152	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	23728314	153209152	2061408	267	158692											
MECP2	4204	broad.mit.edu	37	chrX	153296776	153296776	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttaggtggtttctgctctCgccgggaggggctccctctc	13	13	4	0			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153296776	A	A	153296776	3	1	199	1	0	0	0	0	1	0	0	0	9516	884	31	3	961	3	MECP2	23	153296776	Missense_Mutation	SNP	C	TCGA-67-6215-01A-11D-1753-08	87624	153296776	1973784	268	158693											
F8	2157	broad.mit.edu	37	chrX	154212959	154212959	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgagcaggtgtgtacaTacctggcagagacctgttta	12	7	0	2			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154212959	C	C	154212959	1	2	199	0	1	0	0	0	0	0	0	0	5393	1421	49	5		5	F8	23	154212959	Intron	SNP	T	TCGA-67-6215-01A-11D-1753-08	916183	154212959	1057601	269	158694											
PLEKHG5	57449	broad.mit.edu	37	chr1	6535692	6535692	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcaccccaggtgacaggTaacccgcgtggattcaaccc	11	15	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6535692	C	C	6535692	1	2	200	0	1	0	0	0	0	0	0	0	12168	1653	57	5		5	PLEKHG5	1	6535692	Intron	SNP	T	TCGA-67-6216-01A-11D-1753-08		6535692	242714929	1	158695											
PIK3CD	5293	broad.mit.edu	37	chr1	9787172	9787172	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaccaagcacattggtccTaaaggggctgaagagcctga	14	9	0	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9787172	C	C	9787172	1	2	200	0	1	0	0	0	0	0	0	0	12010	1537	53	5		5	PIK3CD	1	9787172	3'UTR	SNP	T	TCGA-67-6216-01A-11D-1753-08	3251480	9787172	239463449	2	158696											
KIF1B	23095	broad.mit.edu	37	chr1	10394552	10394552	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctccatggatgttctgacAtttgtctcctggtttctgtc	8	11	4	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10394552	G	G	10394552	1	3	200	0	1	0	0	0	0	0	0	0	8354	232	8	5		5	KIF1B	1	10394552	Intron	SNP	A	TCGA-67-6216-01A-11D-1753-08	607380	10394552	238856069	3	158697											
LOC440563	440563	broad.mit.edu	37	chr1	13183742	13183742	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttatgaacagagcagcccGcaattttgccatacttggaa	8	11	0	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13183742	A	A	13183742	3	1	200	1	0	0	0	0	1	0	0	0	8962	1087	38	4	754	4	LOC440563	1	13183742	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	2789190	13183742	236066879	4	158698											
KDM1A	23028	broad.mit.edu	37	chr1	23407850	23407850	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcttgtcatcagatttcaGagcaccaggaataaggtggg	12	7	4	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23407850	C	C	23407850	1	2	200	0	1	0	0	0	0	0	0	0	8192	957	33	4		4	KDM1A	1	23407850	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	10224108	23407850	225842771	5	158699											
SDC3	9672	broad.mit.edu	37	chr1	31351412	31351412	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccgtgggcttctcagagttGaggctggatacagactggtc	14	10	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31351412	C	C	31351412	1	2	200	0	1	0	0	0	0	0	0	0	14066	1305	45	4		4	SDC3	1	31351412	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	7943562	31351412	217899209	6	158700											
CASQ2	845	broad.mit.edu	37	chr1	116268040	116268040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcagccaaataaacttgGtttgagtttggggacttaat	9	7	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116268040	T	T	116268040	1	4	200	0	1	0	0	0	0	0	0	0	2707	1276	44	3		3	CASQ2	1	116268040	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	84916628	116268040	132982581	7	158701											
ATP1A1	476	broad.mit.edu	37	chr1	116931989	116931989	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttagtcatcctatgtaAttgtgtaaaatccgtggctt	7	6	1	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116931989	T	T	116931989	1	4	200	0	1	0	0	0	0	0	0	0	1132	116	4	5		5	ATP1A1	1	116931989	Intron	SNP	A	TCGA-67-6216-01A-11D-1753-08	663949	116931989	132318632	8	158702											
PI4KB	5298	broad.mit.edu	37	chr1	151271344	151271344	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcacaactttgcacaaaaTtgcgctgtgcactgaggaat	9	10	0	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151271344	C	C	151271344	3	2	200	1	0	0	0	0	1	0	0	0	11969	1493	52	5	511	5	PI4KB	1	151271344	Missense_Mutation	SNP	T	TCGA-67-6216-01A-11D-1753-08	34339355	151271344	97979277	9	158703											
TPM3	7170	broad.mit.edu	37	chr1	154144400	154144400	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccatgaagagatgagacaGcactcaacaaaatcaagtgg	9	8	2	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154144400	A	A	154144400	1	1	200	0	1	0	0	0	0	0	0	0	16531	986	34	4		4	TPM3	1	154144400	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	2873056	154144400	95106221	10	158704											
ATF6	22926	broad.mit.edu	37	chr1	161816357	161816357	+	Frame_Shift_Del	DEL	A	-	-													catcagatggtattatccagAaaaacagctacaggtaagat							TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	161816357	-	-	161816357	7	5	200	1	0	1	0	1	0	0	0	0	1088	247	9	0	1344	0	ATF6	1	161816357	Frame_Shift_Del	DEL	A	TCGA-67-6216-01A-11D-1753-08	7671957	161816357	87434264	11	158705											
USH2A	7399	broad.mit.edu	37	chr1	216419957	216419957	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgattacaccttcttccttGacgattaggcacacacaggc	7	13	1	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216419957	A	A	216419957	4	1	200	1	0	0	0	0	0	1	0	0	17162	1299	45	4	13083	4	USH2A	1	216419957	Nonsense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	54603600	216419957	32830664	12	158706											
PPPDE1	51029	broad.mit.edu	37	chr1	244868886	244868886	+	Frame_Shift_Del	DEL	G	-	-													tgggaaagagattcctcgctGgatcaatcgacttgcctact							TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	244868886	-	-	244868886	7	5	200	1	0	1	0	1	0	0	0	0	12509	1357	47	0	398	0	PPPDE1	1	244868886	Frame_Shift_Del	DEL	G	TCGA-67-6216-01A-11D-1753-08	28448929	244868886	4381735	13	158707											
USP34	9736	broad.mit.edu	37	chr2	61622374	61622374	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagttgatatatcctaatTaaaaaaaaaaaagcaagtaa	5	3	0	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61622374	A	A	61622374	1	1	200	0	1	0	0	0	0	0	0	0	17192	1769	61	5		5	USP34	2	61622374	Intron	SNP	T	TCGA-67-6216-01A-11D-1753-08		61622374	181576999	14	158708											
RPL37A	6168	broad.mit.edu	37	chr2	217363591	217363591	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctcggacctaggtcgCggcgacatggtgagtgtggg	19	9	0	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217363591	T	T	217363591	1	4	200	0	1	0	0	0	0	0	0	0	13701	783	27	4		4	RPL37A	2	217363591	5'UTR	SNP	C	TCGA-67-6216-01A-11D-1753-08	155741217	217363591	25835782	15	158709											
COL4A4	1286	broad.mit.edu	37	chr2	227886814	227886814	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccccatggctccttctggtCctctcatgcctggcgcccca	9	19	2	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227886814	T	T	227886814	3	4	200	1	0	0	0	0	1	0	0	0	3725	855	30	4	926	4	COL4A4	2	227886814	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	10523223	227886814	15312559	16	158710											
ZNF445	353274	broad.mit.edu	37	chr3	44540772	44540772	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaaaggctttcccacactCaatacattcataaggttttt	4	10	2	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44540772	A	A	44540772	1	1	200	0	1	0	0	0	0	0	0	0	18045	841	29	3		3	ZNF445	3	44540772	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08		44540772	153481658	17	158711											
SETD2	29072	broad.mit.edu	37	chr3	47103747	47103747	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctttattttgagtttgctTgtctgggtctctctctcttg	8	9	5	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47103747	A	A	47103747	4	1	200	1	0	0	0	0	0	1	0	0	14244	1821	63	5	1527	5	SETD2	3	47103747	Nonsense_Mutation	SNP	T	TCGA-67-6216-01A-11D-1753-08	2562975	47103747	150918683	18	158712											
SETD2	29072	broad.mit.edu	37	chr3	47108555	47108555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagagtatctctgaataCctacttgtgttttccttttc	5	10	1	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47108555	A	A	47108555	1	1	200	0	1	0	0	0	0	0	0	0	14244	522	18	3		3	SETD2	3	47108555	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	4808	47108555	150913875	19	158713											
QRICH1	54870	broad.mit.edu	37	chr3	49095083	49095083	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatgtgctcctccgggatttCtgcagcctggatctgctggg	14	11	2	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49095083	A	A	49095083	4	1	200	1	0	0	0	0	0	1	0	0	12987	922	32	3	1812	3	QRICH1	3	49095083	Nonsense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	1986528	49095083	148927347	20	158714											
ZNF595	152687	broad.mit.edu	37	chr4	53546	53546	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgtcggtccccgcacGgcggctctggcccagcctgc	13	19	1	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53546	A	A	53546	1	1	200	0	1	0	0	0	0	0	0	0	18152	1131	39	4		4	ZNF595	4	53546	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08		53546	191100730	21	158715											
DHX15	1665	broad.mit.edu	37	chr4	24531444	24531444	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgcttctgacttgctagTtgtaaagctacctacataat	6	9	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24531444	C	C	24531444	1	2	200	0	1	0	0	0	0	0	0	0	4541	1740	60	5		5	DHX15	4	24531444	Intron	SNP	T	TCGA-67-6216-01A-11D-1753-08	24477898	24531444	166622832	22	158716											
KIAA1211	57482	broad.mit.edu	37	chr4	57189582	57189582	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagacactccttagatggctCcaaacttacagagaaagtgg	9	10	0	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57189582	G	G	57189582	3	3	200	1	0	0	0	0	1	0	0	0	8285	855	30	4	3249	4	KIAA1211	4	57189582	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	32658138	57189582	133964694	23	158717											
ANKRD17	26057	broad.mit.edu	37	chr4	74007420	74007420	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaatcttatttttacctggAcaccaagtaagaaacagtct	6	8	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74007420	G	G	74007420	1	3	200	0	1	0	0	0	0	0	0	0	646	290	10	5		5	ANKRD17	4	74007420	Intron	SNP	A	TCGA-67-6216-01A-11D-1753-08	16817838	74007420	117146856	24	158718											
SKIV2L2	23517	broad.mit.edu	37	chr5	54711811	54711811	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaaaggaatgtgctaaaaGaattgcaaaagtttcagcag	9	4	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54711811	C	C	54711811	3	2	200	1	0	0	0	0	1	0	0	0	14473	942	33	4	2920	4	SKIV2L2	5	54711811	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		54711811	126203449	25	158719											
HMGCR	3156	broad.mit.edu	37	chr5	74646703	74646703	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagatacttctaaggtttcAttaggactggatgaaaatgt	10	5	2	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74646703	G	G	74646703	2	3	200	1	0	0	0	0	0	0	0	1	7298	204	8	5		5	HMGCR	5	74646703	Silent	SNP	A	TCGA-67-6216-01A-11D-1753-08	19934892	74646703	106268557	26	158720											
THBS4	7060	broad.mit.edu	37	chr5	79351578	79351578	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccctctgccacttatcaCaccattggttgacctgtgct	6	16	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79351578	T	T	79351578	1	4	200	0	1	0	0	0	0	0	0	0	15979	493	17	4		4	THBS4	5	79351578	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	4704875	79351578	101563682	27	158721											
CNOT6	57472	broad.mit.edu	37	chr5	179998448	179998448	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaaggtgtgtcttgagactGataagcttttcaaacctgtc	9	8	3	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179998448	C	C	179998448	1	2	200	0	1	0	0	0	0	0	0	0	3654	1305	45	4		4	CNOT6	5	179998448	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	100646870	179998448	916812	28	158722											
TNXB	7148	broad.mit.edu	37	chr6	32040092	32040092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgggatttgggaagaCaaagaacatggttgagatct	15	4	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32040092	A	A	32040092	1	1	200	0	1	0	0	0	0	0	0	0	16469	493	17	3		3	TNXB	6	32040092	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08		32040092	139074975	29	158723											
PRPH2	5961	broad.mit.edu	37	chr6	42666008	42666008	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcactatttctcagtgttCgggaggggaggggccccagg	17	9	1	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42666008	T	T	42666008	1	4	200	0	1	0	0	0	0	0	0	0	12683	899	31	4		4	PRPH2	6	42666008	3'UTR	SNP	C	TCGA-67-6216-01A-11D-1753-08	10625916	42666008	128449059	30	158724											
COL12A1	1303	broad.mit.edu	37	chr6	75899585	75899585	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattaaatcaactcatcaAtacatgttaacattgcaaaa	2	7	3	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75899585	G	G	75899585	1	3	200	0	1	0	0	0	0	0	0	0	3701	116	4	5		5	COL12A1	6	75899585	Intron	SNP	A	TCGA-67-6216-01A-11D-1753-08	33233577	75899585	95215482	31	158725											
OSTM1	28962	broad.mit.edu	37	chr6	108372212	108372212	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taacactctaaaatatgtatCacatcagaagcaaagtactt	4	8	3	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108372212	G	G	108372212	1	3	200	0	1	0	0	0	0	0	0	0	11392	841	29	4		4	OSTM1	6	108372212	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	32472627	108372212	62742855	32	158726											
SHPRH	257218	broad.mit.edu	37	chr6	146266576	146266576	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctttcccaatgtaaaagTcccagaaaaaccatggcctt	5	11	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146266576	A	A	146266576	3	1	200	1	0	0	0	0	1	0	0	0	14404	1667	58	5	3668	5	SHPRH	6	146266576	Missense_Mutation	SNP	T	TCGA-67-6216-01A-11D-1753-08	37894364	146266576	24848491	33	158727											
MYCT1	80177	broad.mit.edu	37	chr6	153043209	153043209	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctgcaatgtccaccacttCctgtggaaactgagagtcag	9	11	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153043209	T	T	153043209	3	4	200	1	0	0	0	0	1	0	0	0	10116	855	30	4	535	4	MYCT1	6	153043209	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	6776633	153043209	18071858	34	158728											
KIAA1324L	222223	broad.mit.edu	37	chr7	86526912	86526912	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcactctcccacaggaaataGaacgtacacccatcacaggt	7	14	2	1	rs147564059		TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86526912	T	T	86526912	3	4	200	1	0	0	0	0	1	0	0	0	8294	933	33	3	510	3	KIAA1324L	7	86526912	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		86526912	72611751	35	158729											
CROT	54677	broad.mit.edu	37	chr7	86998766	86998766	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtctttgatgtaatacatGaaggatgtttggtcaccccg	10	7	2	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86998766	A	A	86998766	3	1	200	1	0	0	0	0	1	0	0	0	3926	1291	45	4	728	4	CROT	7	86998766	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	471854	86998766	72139897	36	158730											
NUP205	23165	broad.mit.edu	37	chr7	135322857	135322857	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttatgtttttggaaaatgttGataaaaataacagatgtgga	9	1	0	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135322857	A	A	135322857	1	1	200	0	1	0	0	0	0	0	0	0	10854	1305	45	4		4	NUP205	7	135322857	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	48324091	135322857	23815806	37	158731											
LONRF1	91694	broad.mit.edu	37	chr8	12583230	12583230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggaagaacagaaaagccaCcatacctgaaggttttcctc	8	10	0	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12583230	A	A	12583230	1	1	200	0	1	0	0	0	0	0	0	0	8981	522	18	3		3	LONRF1	8	12583230	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08		12583230	133780792	38	158732											
LRP12	29967	broad.mit.edu	37	chr8	105509340	105509340	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgggcaattttcttcatcGctgccatcaccacagtcatc	6	14	4	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105509340	A	A	105509340	2	1	200	1	0	0	0	0	0	0	0	1	9041	1078	38	4		4	LRP12	8	105509340	Silent	SNP	G	TCGA-67-6216-01A-11D-1753-08	92926110	105509340	40854682	39	158733											
EFR3A	23167	broad.mit.edu	37	chr8	132996391	132996391	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttttctcctcagaatggGcaacagctgtatcggcacat	9	11	3	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132996391	A	A	132996391	2	1	200	1	0	0	0	0	0	0	0	1	4998	1190	42	4		4	EFR3A	8	132996391	Silent	SNP	G	TCGA-67-6216-01A-11D-1753-08	27487051	132996391	13367631	40	158734											
KANK1	23189	broad.mit.edu	37	chr9	732583	732583	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagatgaaatgcaggttcaaGaatgtgaacctgagaaggtg	13	4	1	5			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	732583	A	A	732583	3	1	200	1	0	0	0	0	1	0	0	0	8046	943	33	4	3229	4	KANK1	9	732583	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		732583	140480848	41	158735											
DAPK1	1612	broad.mit.edu	37	chr9	90220046	90220046	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaatgtcatcaccctgcaCgaggtctatgagaacaagac	8	13	3	2	rs36207429		TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90220046	T	T	90220046	2	4	200	1	0	0	0	0	0	0	0	1	4268	535	19	4		4	DAPK1	9	90220046	Silent	SNP	C	TCGA-67-6216-01A-11D-1753-08	89487463	90220046	50993385	42	158736											
KIAA1529	57653	broad.mit.edu	37	chr9	100125773	100125773	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatgacctgtttacatgtTcagtctctgagaggttacga	10	9	2	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100125773	A	A	100125773	1	1	200	0	1	0	0	0	0	0	0	0	8310	1798	62	5		5	KIAA1529	9	100125773	Intron	SNP	T	TCGA-67-6216-01A-11D-1753-08	9905727	100125773	41087658	43	158737											
FCN2	2220	broad.mit.edu	37	chr9	137777772	137777772	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctggggcttgggggtcGggggccctgaatgggggtgc	23	8	0	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137777772	A	A	137777772	1	1	200	0	1	0	0	0	0	0	0	0	5849	1131	39	4		4	FCN2	9	137777772	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	37651999	137777772	3435659	44	158738											
ARHGAP21	57584	broad.mit.edu	37	chr10	24896491	24896491	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttgatctttctgtctttGagttgggctgagcatccagg	11	7	3	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24896491	A	A	24896491	3	1	200	1	0	0	0	0	1	0	0	0	873	1294	45	4	3319	4	ARHGAP21	10	24896491	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		24896491	110638256	45	158739											
CREM	1390	broad.mit.edu	37	chr10	35468111	35468111	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcctggtgttcccaagattGaagaagagagatcagaggaa	13	6	1	6			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35468111	C	C	35468111	3	2	200	1	0	0	0	0	1	0	0	0	3900	1291	45	4	419	4	CREM	10	35468111	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	10571620	35468111	100066636	46	158740											
RTKN2	219790	broad.mit.edu	37	chr10	64000899	64000899	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaaattaaaatcatacatAcgttctttattgctgaagtg	5	6	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64000899	G	G	64000899	5	3	200	1	0	0	0	0	0	0	1	0	13834	405	14	5	1493	5	RTKN2	10	64000899	Splice_Site	SNP	A	TCGA-67-6216-01A-11D-1753-08	28532788	64000899	71533848	47	158741											
CC2D2B	387707	broad.mit.edu	37	chr10	97776014	97776017	+	Frame_Shift_Del	DEL	TTTC	-	-													catgccatccttctctgtaaTttctttctgtattttggaaa							TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97776017	-	-	97776014	7	5	200	1	0	1	0	1	0	0	0	0	2755	1490	52	0	483	0	CC2D2B	10	97776014	Frame_Shift_Del	DEL	TTTC	TCGA-67-6216-01A-11D-1753-08	33775115	97776014	37758733	48	158742											
FAM160B1	57700	broad.mit.edu	37	chr10	116590569	116590569	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tataagttatgggaaattttCaatgccattttcttaattgt	6	4	2	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116590569	T	T	116590569	1	4	200	0	1	0	0	0	0	0	0	0	5516	841	29	4		4	FAM160B1	10	116590569	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	18814555	116590569	18944178	49	158743											
DEAF1	10522	broad.mit.edu	37	chr11	679720	679720	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaagacgtcgccctgggccGgactctctgatatgacagca	12	13	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	679720	A	A	679720	3	1	200	1	0	0	0	0	1	0	0	0	4413	1116	39	4	623	4	DEAF1	11	679720	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		679720	134326796	50	158744											
NUP98	4928	broad.mit.edu	37	chr11	3704561	3704561	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcctcgtggatccatttgGcaggtacacggagcttctgg	14	10	1	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3704561	A	A	3704561	3	1	200	1	0	0	0	0	1	0	0	0	10868	1203	42	4	631	4	NUP98	11	3704561	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	3024841	3704561	131301955	51	158745											
FERMT3	83706	broad.mit.edu	37	chr11	63990575	63990575	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgccaacaaccgactgatcCgcatcgacttggccgtgggc	11	15	0	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63990575	T	T	63990575	3	4	200	1	0	0	0	0	1	0	0	0	5876	652	23	4	1788	4	FERMT3	11	63990575	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	60286014	63990575	71015941	52	158746											
LAYN	143903	broad.mit.edu	37	chr11	111428444	111428444	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatattgccttgtttacttCattaaaacccacggcagcac	7	11	1	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111428444	T	T	111428444	1	4	200	0	1	0	0	0	0	0	0	0	8721	841	29	4		4	LAYN	11	111428444	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	47437869	111428444	23578072	53	158747											
KLRC3	3823	broad.mit.edu	37	chr12	10588621	10588621	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtgagggactgtgctctaTgataactgcacttaagaagc	11	7	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10588621	A	A	10588621	1	1	200	0	1	0	0	0	0	0	0	0	8488	1479	51	5		5	KLRC3	12	10588621	5'Flank	SNP	T	TCGA-67-6216-01A-11D-1753-08		10588621	123263274	54	158748											
ABCC9	10060	broad.mit.edu	37	chr12	22066006	22066006	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctgcaacttttttctgaaGaaaaaaaaaagaaaaaaaaa	4	4	2	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22066006	A	A	22066006	1	1	200	0	1	0	0	0	0	0	0	0	59	957	33	4		4	ABCC9	12	22066006	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	11477385	22066006	111785889	55	158749											
ABCC9	10060	broad.mit.edu	37	chr12	22068751	22068751	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtatgttgcttttgacaGcaaattcacaaatggttgaa	8	7	1	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22068751	A	A	22068751	2	1	200	1	0	0	0	0	0	0	0	1	59	962	34	4		4	ABCC9	12	22068751	Silent	SNP	G	TCGA-67-6216-01A-11D-1753-08	2745	22068751	111783144	56	158750											
ERGIC2	51290	broad.mit.edu	37	chr12	29509463	29509465	+	Intron	DEL	ATG	-	-													ttcaatacagttaccattttAtgatgagaaaaatgtgtata							TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29509465	-	-	29509463	6	5	200	0	1	1	0	1	0	0	0	0	5266	464	16	0		0	ERGIC2	12	29509463	Intron	DEL	ATG	TCGA-67-6216-01A-11D-1753-08	7440712	29509463	104342432	57	158751											
LRRK2	120892	broad.mit.edu	37	chr12	40761481	40761481	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaccgtttgggacatcaatCttccacatgaagtgcaaaat	8	9	2	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40761481	G	G	40761481	3	3	200	1	0	0	0	0	1	0	0	0	9120	913	32	4	7700	4	LRRK2	12	40761481	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	11252018	40761481	93090414	58	158752											
CACNB3	784	broad.mit.edu	37	chr12	49220478	49220478	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaaatgcctagctctgCccgggctcagctctgcccag	12	14	3	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49220478	T	T	49220478	1	4	200	0	1	0	0	0	0	0	0	0	2580	754	26	4		4	CACNB3	12	49220478	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	8458997	49220478	84631417	59	158753											
PRIM1	5557	broad.mit.edu	37	chr12	57128024	57128024	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgctagactggtcttctTataatctaaattatgaagaa	8	5	3	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57128024	A	A	57128024	4	1	200	1	0	0	0	0	0	1	0	0	12596	1763	61	5	120	5	PRIM1	12	57128024	Nonsense_Mutation	SNP	T	TCGA-67-6216-01A-11D-1753-08	7907546	57128024	76723871	60	158754											
ACACB	32	broad.mit.edu	37	chr12	109698333	109698333	+	Frame_Shift_Del	DEL	T	-	-													agcctacatcgtggacggccTtagacaatacaaacagccca							TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109698333	-	-	109698333	7	5	200	1	0	1	0	1	0	0	0	0	107	1609	56	0	6731	0	ACACB	12	109698333	Frame_Shift_Del	DEL	T	TCGA-67-6216-01A-11D-1753-08	52570309	109698333	24153562	61	158755											
IL31	386653	broad.mit.edu	37	chr12	122657188	122657188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattgtcttgagatatgccCggatggctgggctgtggatg	16	6	1	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122657188	A	A	122657188	3	1	200	1	0	0	0	0	1	0	0	0	7760	652	23	1	232	1	IL31	12	122657188	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	12958855	122657188	11194707	62	158756											
TGDS	23483	broad.mit.edu	37	chr13	95227128	95227128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taataggaaaaaacaaaagaCaaaaaaaaaaaagaaaagaa	5	2	0	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95227128	A	A	95227128	1	1	200	0	1	0	0	0	0	0	0	0	15937	493	17	3		3	TGDS	13	95227128	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08		95227128	19942750	63	158757											
MCF2L	23263	broad.mit.edu	37	chr13	113678850	113678850	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaacgatgaagaacatgcCtcagttttaactgaaatact	7	8	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113678850	G	G	113678850	1	3	200	0	1	0	0	0	0	0	0	0	9472	696	24	4		4	MCF2L	13	113678850	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	18451722	113678850	1491028	64	158758											
APEX1	328	broad.mit.edu	37	chr14	20925518	20925520	+	In_Frame_Del	DEL	ATG	-	-													cctacaccttttggacttatAtgatgaatgctcgatccaag							TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20925520	-	-	20925518	7	5	200	1	0	1	0	1	0	0	0	0	771	449	16	0	822	0	APEX1	14	20925518	In_Frame_Del	DEL	ATG	TCGA-67-6216-01A-11D-1753-08		20925518	86424022	65	158759											
MYH7	4625	broad.mit.edu	37	chr14	23887389	23887389	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctgcctgcaaaggggcctCagccagaagtcaggctgctc	12	14	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23887389	G	G	23887389	1	3	200	0	1	0	0	0	0	0	0	0	10133	841	29	4		4	MYH7	14	23887389	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	2961871	23887389	83462151	66	158760											
TIMM9	26520	broad.mit.edu	37	chr14	58878549	58878549	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagatgtgagccactgcacCcagcctgacatggtggcatt	11	12	0	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58878549	T	T	58878549	1	4	200	0	1	0	0	0	0	0	0	0	16039	638	22	4		4	TIMM9	14	58878549	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	34991160	58878549	48470991	67	158761											
C14orf73	91828	broad.mit.edu	37	chr14	103574737	103574737	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggctctgtctcgcagggttCcgaggccacatggttggacc	14	12	2	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103574737	G	G	103574737	3	3	200	1	0	0	0	0	1	0	0	0	1792	855	30	4	1897	4	C14orf73	14	103574737	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	44696188	103574737	3774803	68	158762											
FAM81A	145773	broad.mit.edu	37	chr15	59801128	59801128	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaccaaactgaagatgtctCacagagacagtaaccaccag	8	12	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59801128	G	G	59801128	3	3	200	1	0	0	0	0	1	0	0	0	5681	826	29	4	628	4	FAM81A	15	59801128	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08		59801128	42730264	69	158763											
TRIP4	9325	broad.mit.edu	37	chr15	64717779	64717779	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccgtcaggttgtcttctGggctgtgtggacctaattga	12	8	3	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64717779	T	T	64717779	2	4	200	1	0	0	0	0	0	0	0	1	16683	1335	47	2		2	TRIP4	15	64717779	Silent	SNP	G	TCGA-67-6216-01A-11D-1753-08	4916651	64717779	37813613	70	158764											
FANCI	55215	broad.mit.edu	37	chr15	89824490	89824490	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttttgactatttgtcctttCtgccccttcagactgtacaa	5	12	2	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89824490	T	T	89824490	2	4	200	1	0	0	0	0	0	0	0	1	5726	912	32	4		4	FANCI	15	89824490	Silent	SNP	C	TCGA-67-6216-01A-11D-1753-08	25106711	89824490	12706902	71	158765											
MLST8	64223	broad.mit.edu	37	chr16	2258828	2258828	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagagagagtatggcggcCaccagaaggctgttgtctgc	14	9	2	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2258828	T	T	2258828	3	4	200	1	0	0	0	0	1	0	0	0	9727	594	21	4	961	4	MLST8	16	2258828	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08		2258828	88095925	72	158766											
ABAT	18	broad.mit.edu	37	chr16	8862537	8862537	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaaaattaaaaattaaacGataaaaagaactggggtttc	7	3	0	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8862537	T	T	8862537	1	4	200	0	1	0	0	0	0	0	0	0	27	1073	37	3		3	ABAT	16	8862537	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	6603709	8862537	81492216	73	158767											
TNRC6A	27327	broad.mit.edu	37	chr16	24816865	24816865	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacaactgaaaacacacaGtacgtgtagttagtgtgagt	10	6	0	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24816865	A	A	24816865	1	1	200	0	1	0	0	0	0	0	0	0	16463	1044	36	4		4	TNRC6A	16	24816865	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	15954328	24816865	65537888	74	158768											
ABCC12	94160	broad.mit.edu	37	chr16	48145805	48145805	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctaataaaataacttcaTcacaagactctaagaactgc	3	10	4	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48145805	A	A	48145805	3	1	200	1	0	0	0	0	1	0	0	0	52	1435	50	5	2137	5	ABCC12	16	48145805	Missense_Mutation	SNP	T	TCGA-67-6216-01A-11D-1753-08	23328940	48145805	42208948	75	158769											
ABCC12	94160	broad.mit.edu	37	chr16	48173268	48173268	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaagaaaagcgcaaagGttcaggctttggaagagtca	13	6	2	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48173268	C	C	48173268	1	2	200	0	1	0	0	0	0	0	0	0	52	1276	44	4		4	ABCC12	16	48173268	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	27463	48173268	42181485	76	158770											
DYNC1LI2	1783	broad.mit.edu	37	chr16	66759696	66759696	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgcagcactactcaacCacaagagtcacaagtctcca	5	15	3	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66759696	T	T	66759696	1	4	200	0	1	0	0	0	0	0	0	0	4885	609	21	4		4	DYNC1LI2	16	66759696	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	18586428	66759696	23595057	77	158771											
VPS53	55275	broad.mit.edu	37	chr17	556493	556493	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggaaagctgccggatctgCggaatccccatatactttcc	9	13	1	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	556493	T	T	556493	1	4	200	0	1	0	0	0	0	0	0	0	17342	783	27	4		4	VPS53	17	556493	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08		556493	80638717	78	158772											
SERPINF1	5176	broad.mit.edu	37	chr17	1675167	1675167	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctccgcctcttctcagaGctgcgcataaaatccagctt	7	15	2	1	rs138341386	byFrequency	TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1675167	A	A	1675167	2	1	200	1	0	0	0	0	0	0	0	1	14227	985	34	4		4	SERPINF1	17	1675167	Silent	SNP	G	TCGA-67-6216-01A-11D-1753-08	1118674	1675167	79520043	79	158773											
SLFN12	55106	broad.mit.edu	37	chr17	33749738	33749738	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccatgacttcacaaaaatcaGaaagtagttaccattctgca	5	10	3	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33749738	C	C	33749738	3	2	200	1	0	0	0	0	1	0	0	0	14848	933	33	4	1438	4	SLFN12	17	33749738	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	32074571	33749738	47445472	80	158774											
ARL17A	51326	broad.mit.edu	37	chr17	44594493	44594493	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aactggcatcatctgtccaaGagatgggatggataagaagt	12	6	2	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44594493	C	C	44594493	2	2	200	1	0	0	0	0	0	0	0	1	935	929	33	4		4	ARL17A	17	44594493	Silent	SNP	G	TCGA-67-6216-01A-11D-1753-08	10844755	44594493	36600717	81	158775											
ITGA3	3675	broad.mit.edu	37	chr17	48148194	48148194	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actccctactctccctccctCaatccctgtgaaggaaacag	5	17	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48148194	G	G	48148194	1	3	200	0	1	0	0	0	0	0	0	0	7947	841	29	4		4	ITGA3	17	48148194	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	3553701	48148194	33047016	82	158776											
EME1	146956	broad.mit.edu	37	chr17	48452594	48452594	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctaaagaagtcatcacccTcactggattctggtgatagt	8	10	5	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48452594	C	C	48452594	3	2	200	1	0	0	0	0	1	0	0	0	5130	1551	54	5	27	5	EME1	17	48452594	Missense_Mutation	SNP	T	TCGA-67-6216-01A-11D-1753-08	304400	48452594	32742616	83	158777											
LRRC59	55379	broad.mit.edu	37	chr17	48465414	48465414	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataactacaagagggacagcCacctaccacgttctacttcc	6	14	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48465414	T	T	48465414	1	4	200	0	1	0	0	0	0	0	0	0	9102	609	21	4		4	LRRC59	17	48465414	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	12820	48465414	32729796	84	158778											
CACNA1G	8913	broad.mit.edu	37	chr17	48655545	48655545	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcacctctactctcctgttCcaggtgcctgccaaagctct	6	17	4	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48655545	T	T	48655545	1	4	200	0	1	0	0	0	0	0	0	0	2570	870	30	4		4	CACNA1G	17	48655545	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	190131	48655545	32539665	85	158779											
LRRC37A3	374819	broad.mit.edu	37	chr17	62851813	62851813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtaatcccagctactcGggaggctgaggcaggagaat	14	10	0	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62851813	T	T	62851813	1	4	200	0	1	0	0	0	0	0	0	0	9080	1131	39	1		1	LRRC37A3	17	62851813	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	14196268	62851813	18343397	86	158780											
BPTF	2186	broad.mit.edu	37	chr17	65871186	65871186	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttcattagtgttatttatGaaatctccagttttacttgc	5	6	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65871186	A	A	65871186	1	1	200	0	1	0	0	0	0	0	0	0	1504	1305	45	4		4	BPTF	17	65871186	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	3019373	65871186	15324024	87	158781											
LPIN2	9663	broad.mit.edu	37	chr18	2954540	2954540	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacaaagaaagcttctcCgttatcacccaacttcatgt	4	13	4	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2954540	G	G	2954540	3	3	200	1	0	0	0	0	1	0	0	0	9006	661	23	4	2512	4	LPIN2	18	2954540	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08		2954540	75122708	88	158782											
SMAD4	4089	broad.mit.edu	37	chr18	48591918	48591918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggacccttctggaggagatCgcttttgtttgggtcaactc	12	9	2	1	rs80338963		TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48591918	A	A	48591918	3	1	200	1	0	0	0	0	1	0	0	0	14874	884	31	3	1111	3	SMAD4	18	48591918	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	45637378	48591918	29485330	89	158783											
PTBP1	5725	broad.mit.edu	37	chr19	803570	803570	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctcttgcagcggggatctGacgagcttttctctacttgt	10	10	3	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	803570	A	A	803570	3	1	200	1	0	0	0	0	1	0	0	0	12831	1290	45	4	59	4	PTBP1	19	803570	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		803570	58325413	90	158784											
MUC16	94025	broad.mit.edu	37	chr19	9066642	9066642	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taatttttgtagtctcagagGaaacagacattgatgtggaa	10	4	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9066642	A	A	9066642	3	1	200	1	0	0	0	0	1	0	0	0	10067	1174	41	4	23047	4	MUC16	19	9066642	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	8263072	9066642	50062341	91	158785											
ZNF780A	284323	broad.mit.edu	37	chr19	40581559	40581559	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatactctgatgttgaacaaGgtttgagctacgattaaagg	10	5	1	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40581559	A	A	40581559	3	1	200	1	0	0	0	0	1	0	0	0	18281	1000	35	4	1266	4	ZNF780A	19	40581559	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	31514917	40581559	18547424	92	158786											
TEX101	83639	broad.mit.edu	37	chr19	43920140	43920140	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctccctcctgacctgtgcGtatgggggacataggggaga	15	11	0	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43920140	A	A	43920140	1	1	200	0	1	0	0	0	0	0	0	0	15895	1160	40	4		4	TEX101	19	43920140	Intron	SNP	G	TCGA-67-6216-01A-11D-1753-08	3338581	43920140	15208843	93	158787											
NTF4	4909	broad.mit.edu	37	chr19	49564708	49564708	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcccacacggccctgggcatCagcggtcaatgcccgcacat	11	17	2	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49564708	T	T	49564708	3	4	200	1	0	0	0	0	1	0	0	0	10792	826	29	4	89	4	NTF4	19	49564708	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	5644568	49564708	9564275	94	158788											
ZNF331	55422	broad.mit.edu	37	chr19	54074859	54074859	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggtttctgtttcaggGtttggtgacgttcgccgacg	16	7	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54074859	A	A	54074859	3	1	200	1	0	0	0	0	1	0	0	0	17975	1275	44	4	17	4	ZNF331	19	54074859	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08	4510151	54074859	5054124	95	158789											
LILRB2	10288	broad.mit.edu	37	chr19	54780707	54780707	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgatgtcggaggatgaggaaGaggaggaggaggaggaggag	23	2	0	2			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54780707	A	A	54780707	2	1	200	1	0	0	0	0	0	0	0	1	8863	929	33	4		4	LILRB2	19	54780707	Silent	SNP	G	TCGA-67-6216-01A-11D-1753-08	705848	54780707	4348276	96	158790											
SNRPB2	6629	broad.mit.edu	37	chr20	16717952	16717952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatataatatcaaaaatgcGtggaacttttgctgacaaag	9	5	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16717952	T	T	16717952	3	4	200	1	0	0	0	0	1	0	0	0	14976	1145	40	3	294	3	SNRPB2	20	16717952	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		16717952	46307568	97	158791											
TPX2	22974	broad.mit.edu	37	chr20	30354572	30354572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatctattatgtgtctataCtgtgtttatggacaccttta	6	7	2	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30354572	T	T	30354572	1	4	200	0	1	0	0	0	0	0	0	0	16556	580	20	4		4	TPX2	20	30354572	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	13636620	30354572	32670948	98	158792											
TTLL9	164395	broad.mit.edu	37	chr20	30530874	30530874	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaggtgccacccaggcctCccccccactcccagatccca	7	22	0	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30530874	T	T	30530874	1	4	200	0	1	0	0	0	0	0	0	0	16860	870	30	4		4	TTLL9	20	30530874	3'UTR	SNP	C	TCGA-67-6216-01A-11D-1753-08	176302	30530874	32494646	99	158793											
NFS1	9054	broad.mit.edu	37	chr20	34260738	34260738	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cactgtgtagtccacttcctCctctgtagtgaagcggccaa	9	13	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34260738	G	G	34260738	3	3	200	1	0	0	0	0	1	0	0	0	10480	864	30	4	132	4	NFS1	20	34260738	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08	3729864	34260738	28764782	100	158794											
PHF20	51230	broad.mit.edu	37	chr20	34443267	34443267	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtagataattgtttatgctCttatccttttatgttcttat	5	5	2	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34443267	G	G	34443267	1	3	200	0	1	0	0	0	0	0	0	0	11926	928	32	4		4	PHF20	20	34443267	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	182529	34443267	28582253	101	158795											
SEMG2	6407	broad.mit.edu	37	chr20	43850191	43850191	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgcaaacagtaacctgttCaggcacagattcttctcctt	8	11	3	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43850191	G	G	43850191	1	3	200	0	1	0	0	0	0	0	0	0	14158	841	29	4		4	SEMG2	20	43850191	Intron	SNP	C	TCGA-67-6216-01A-11D-1753-08	9406924	43850191	19175329	102	158796											
CRYBB1	1414	broad.mit.edu	37	chr22	27012195	27012195	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccgggactaggggatgttCctgcaggtggggcccccttc	16	12	0	0			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27012195	T	T	27012195	3	4	200	1	0	0	0	0	1	0	0	0	3942	855	30	4	689	4	CRYBB1	22	27012195	Missense_Mutation	SNP	C	TCGA-67-6216-01A-11D-1753-08		27012195	24292371	103	158797											
ZDHHC15	158866	broad.mit.edu	37	chrX	74644506	74644506	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctaaggtggttttgtttctGctgacaagccaacaatggta	10	8	1	1			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74644506	C	C	74644506	3	2	200	1	0	0	0	0	1	0	0	0	17731	1310	46	4	312	4	ZDHHC15	23	74644506	Missense_Mutation	SNP	G	TCGA-67-6216-01A-11D-1753-08		74644506	80626054	104	158798											
ALG13	79868	broad.mit.edu	37	chrX	110961491	110961491	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catactgattacaagagttcAaatcagaataggtaataaag	7	5	2	3			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110961491	G	G	110961491	2	3	200	1	0	0	0	0	0	0	0	1	515	117	5	5		5	ALG13	23	110961491	Silent	SNP	A	TCGA-67-6216-01A-11D-1753-08	36316985	110961491	44309069	105	158799											
CHD5	26038	broad.mit.edu	37	chr1	6188908	6188908	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggcccaccctccacgtcGtccttgaagagttcctccgt	9	16	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6188908	A	A	6188908	2	1	201	1	0	0	0	0	0	0	0	1	3359	1136	40	4		4	CHD5	1	6188908	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08		6188908	243061713	1	158800											
MIIP	60672	broad.mit.edu	37	chr1	12082128	12082129	+	Intron	DNP	GG	CT	CT													ggttctggcagccactccctGggtgacccggcccctctctc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	12082129	CT	CT	12082128	1	2	201	0	1	0	0	0	0	0	0	0	9678	1363	47	4		4	MIIP	1	12082128	Intron	DNP	GG	TCGA-67-6217-01A-11D-1753-08	5893220	12082128	237168493	2	158801											
CROCC	9696	broad.mit.edu	37	chr1	17185709	17185709	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacattgactactacctgggAcagagcttccgggagcaact	11	11	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17185709	G	G	17185709	1	3	201	0	1	0	0	0	0	0	0	0	3925	290	10	5		5	CROCC	1	17185709	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	5103581	17185709	232064912	3	158802											
GPATCH3	63906	broad.mit.edu	37	chr1	27220005	27220005	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctattaagagttaaacCtagagtttttttggcttttt	7	4	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27220005	G	G	27220005	1	3	201	0	1	0	0	0	0	0	0	0	6657	696	24	4		4	GPATCH3	1	27220005	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	10034296	27220005	222030616	4	158803											
BAI2	576	broad.mit.edu	37	chr1	32198202	32198202	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccccatctggcacttcacCacatcctggacctggggaca	8	17	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32198202	T	T	32198202	2	4	201	1	0	0	0	0	0	0	0	1	1304	581	21	4		4	BAI2	1	32198202	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	4978197	32198202	217052419	5	158804											
RNF19B	127544	broad.mit.edu	37	chr1	33402700	33402700	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctttggtgtctgcaggGgggatcctcttcactgcctc	12	12	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33402700	T	T	33402700	3	4	201	1	0	0	0	0	1	0	0	0	13582	1232	43	2	296	2	RNF19B	1	33402700	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	1204498	33402700	215847921	6	158805											
DLGAP3	58512	broad.mit.edu	37	chr1	35333284	35333284	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcatctccttccccagcctCcacgaagtctgccctgaatg	7	17	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35333284	G	G	35333284	1	3	201	0	1	0	0	0	0	0	0	0	4601	870	30	4		4	DLGAP3	1	35333284	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1930584	35333284	213917337	7	158806											
INPP5B	3633	broad.mit.edu	37	chr1	38411418	38411418	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacaggtggggaccaagccCctcactcacgcgtgttcctg	12	14	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38411418	G	G	38411418	1	3	201	0	1	0	0	0	0	0	0	0	7825	638	22	4		4	INPP5B	1	38411418	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	3078134	38411418	210839203	8	158807											
RAB3B	5865	broad.mit.edu	37	chr1	52442781	52442781	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagttttaccatctgtcacTgaagccatctgcaagagaga	8	11	3	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52442781	C	C	52442781	2	2	201	1	0	0	0	0	0	0	0	1	13040	1567	55	5		5	RAB3B	1	52442781	Silent	SNP	T	TCGA-67-6217-01A-11D-1753-08	14031363	52442781	196807840	9	158808											
WDR78	79819	broad.mit.edu	37	chr1	67301283	67301283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaaagcatgtattataCatttatctaattctcggatt	5	6	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67301283	A	A	67301283	1	1	201	0	1	0	0	0	0	0	0	0	17455	493	17	3		3	WDR78	1	67301283	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	14858502	67301283	181949338	10	158809											
WLS	79971	broad.mit.edu	37	chr1	68620819	68620819	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatctccccaattcccacaTtgattttcttcttctcattc	1	14	4	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68620819	C	C	68620819	3	2	201	1	0	0	0	0	1	0	0	0	17503	1493	52	5	1158	5	WLS	1	68620819	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	1319536	68620819	180629802	11	158810											
LRRC7	57554	broad.mit.edu	37	chr1	70257906	70257906	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaaaatgtgctttaatatCttctcttagcaaataatcta	4	7	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70257906	A	A	70257906	1	1	201	0	1	0	0	0	0	0	0	0	9107	928	32	3		3	LRRC7	1	70257906	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1637087	70257906	178992715	12	158811											
SLC44A5	204962	broad.mit.edu	37	chr1	75805301	75805301	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccttgaaatctgggtcatAtgtccttggatcacctgcat	8	12	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75805301	T	T	75805301	3	4	201	1	0	0	0	0	1	0	0	0	14753	449	16	5	2287	5	SLC44A5	1	75805301	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	5547395	75805301	173445320	13	158812											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	77093235	77093235	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacgggatgataaatgacaCctactgcaagtaagatcaca	8	9	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77093235	T	T	77093235	3	4	201	1	0	0	0	0	1	0	0	0	15343	507	18	4	750	4	ST6GALNAC3	1	77093235	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1287934	77093235	172157386	14	158813											
CLCA4	22802	broad.mit.edu	37	chr1	87025542	87025542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcttaagttgggaaatgCctgtcacaaaaccctgctaa	7	11	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87025542	A	A	87025542	1	1	201	0	1	0	0	0	0	0	0	0	3490	754	26	3		3	CLCA4	1	87025542	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	9932307	87025542	162225079	15	158814											
GBP5	115362	broad.mit.edu	37	chr1	89732742	89732742	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcagagtccacactaagtCtgggaagaagctcgcagagt	11	10	2	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89732742	A	A	89732742	3	1	201	1	0	0	0	0	1	0	0	0	6339	913	32	3	1265	3	GBP5	1	89732742	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	2707200	89732742	159517879	16	158815											
RSBN1	54665	broad.mit.edu	37	chr1	114308968	114308986	+	Frame_Shift_Del	DEL	ATTTCTAGGGATGAAGTAG	-	-													gttttgaactgatgaatgacAtttctagggatgaagtagat							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114308986	-	-	114308968	7	5	201	1	0	1	0	1	0	0	0	0	13807	214	8	0	369	0	RSBN1	1	114308968	Frame_Shift_Del	DEL	ATTTCTAGGGATGAAGTAG	TCGA-67-6217-01A-11D-1753-08	24576226	114308968	134941653	17	158816											
S100A13	6284	broad.mit.edu	37	chr1	153591462	153591462	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	actcattgaacttgagctccGagtcctgattcacatccaag	7	12	2	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153591462	C	C	153591462	3	2	201	1	0	0	0	0	1	0	0	0	13886	1059	37	4	94	4	S100A13	1	153591462	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	39282494	153591462	95659159	18	158817											
GATAD2B	57459	broad.mit.edu	37	chr1	153790562	153790562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccccttgggccccaggcCgagagggaagcttagatagg	14	12	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153790562	A	A	153790562	3	1	201	1	0	0	0	0	1	0	0	0	6323	652	23	1	1126	1	GATAD2B	1	153790562	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	199100	153790562	95460059	19	158818											
NUP210L	91181	broad.mit.edu	37	chr1	153998192	153998192	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacgaaggcagctccttcCctagggaacaaggaaaggaa	11	11	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153998192	A	A	153998192	3	1	201	1	0	0	0	0	1	0	0	0	10856	637	22	2	1762	2	NUP210L	1	153998192	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	207630	153998192	95252429	20	158819											
FCRL5	83416	broad.mit.edu	37	chr1	157513948	157513948	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaactcccattctcacagGtacgagttttttctacagag	6	12	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157513948	T	T	157513948	1	4	201	0	1	0	0	0	0	0	0	0	5855	1276	44	3		3	FCRL5	1	157513948	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	3515756	157513948	91736673	21	158820											
SPTA1	6708	broad.mit.edu	37	chr1	158656297	158656297	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttacggtttcctttggaAattgctccatttttcctaaa	5	9	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158656297	G	G	158656297	3	3	201	1	0	0	0	0	1	0	0	0	15234	14	1	5	7456	5	SPTA1	1	158656297	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	1142349	158656297	90594324	22	158821											
NDUFS2	4720	broad.mit.edu	37	chr1	161179960	161179960	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagaacttctctcttcgGcttgatgagttggaggaggt	12	7	3	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161179960	T	T	161179960	2	4	201	1	0	0	0	0	0	0	0	1	10387	1190	42	3		3	NDUFS2	1	161179960	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	2523663	161179960	88070661	23	158822											
OLFML2B	25903	broad.mit.edu	37	chr1	161967473	161967473	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctagatgttaaaactaatcGttggtcaaaggcttaactcc	7	9	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161967473	A	A	161967473	1	1	201	0	1	0	0	0	0	0	0	0	10953	1160	40	4		4	OLFML2B	1	161967473	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	787513	161967473	87283148	24	158823											
CD247	919	broad.mit.edu	37	chr1	167404576	167404576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccagcccttcctctggaGccctcctccagcccttcctc	5	23	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167404576	T	T	167404576	1	4	201	0	1	0	0	0	0	0	0	0	3018	986	34	3		3	CD247	1	167404576	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	5437103	167404576	81846045	25	158824											
ATP1B1	481	broad.mit.edu	37	chr1	169100659	169100659	+	RNA	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacctgcagcccctgctgGccgtacagttcaccaatctt	7	15	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169100659	T	T	169100659	1	4	201	0	1	0	0	0	0	0	0	0	1136	1203	42	3		3	ATP1B1	1	169100659	RNA	SNP	G	TCGA-67-6217-01A-11D-1753-08	1696083	169100659	80149962	26	158825											
RASAL2	9462	broad.mit.edu	37	chr1	178421741	178421741	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgaccgcacatctcggactCtaactcttattgccaaggtc	7	13	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	178421741	G	G	178421741	3	3	201	1	0	0	0	0	1	0	0	0	13172	912	32	4	2022	4	RASAL2	1	178421741	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	9321082	178421741	70828880	27	158826											
TDRD5	163589	broad.mit.edu	37	chr1	179660116	179660116	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaaacagaatccagccGcttaggctttgatgaactcc	9	10	0	4	rs111586742		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179660116	T	T	179660116	1	4	201	0	1	0	0	0	0	0	0	0	15855	1102	38	3		3	TDRD5	1	179660116	3'UTR	SNP	G	TCGA-67-6217-01A-11D-1753-08	1238375	179660116	69590505	28	158827											
CACNA1E	777	broad.mit.edu	37	chr1	181705586	181705586	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacccgtaagccaccctcgcGttgctccctctttagtgcta	7	16	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181705586	A	A	181705586	1	1	201	0	1	0	0	0	0	0	0	0	2568	1160	40	4		4	CACNA1E	1	181705586	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	2045470	181705586	67545035	29	158828											
CACNA1E	777	broad.mit.edu	37	chr1	181726250	181726250	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatggaggagtgcagcctGgagaagaatgaggtaatgac	16	4	0	5			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181726250	T	T	181726250	2	4	201	1	0	0	0	0	0	0	0	1	2568	1335	47	2		2	CACNA1E	1	181726250	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	20664	181726250	67524371	30	158829											
CFHR3	10878	broad.mit.edu	37	chr1	196757614	196757614	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttacttaaaaatatagaaAacaattttaggagtaaagag	6	2	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196757614	T	T	196757614	1	4	201	0	1	0	0	0	0	0	0	0	3316	29	1	5		5	CFHR3	1	196757614	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	15031364	196757614	52493007	31	158830											
UBE2T	29089	broad.mit.edu	37	chr1	202301181	202301181	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattatttccatgtacttcTttgttgcaagatttaaatac	4	6	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202301181	C	C	202301181	1	2	201	0	1	0	0	0	0	0	0	0	16999	1624	56	5		5	UBE2T	1	202301181	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	5543567	202301181	46949440	32	158831											
CNTN2	6900	broad.mit.edu	37	chr1	205035635	205035635	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccaccatccagctcagctGgagccgtggcttcgacaacc	9	17	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205035635	A	A	205035635	4	1	201	1	0	0	0	0	0	1	0	0	3673	1357	47	4	1937	4	CNTN2	1	205035635	Nonsense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	2734454	205035635	44214986	33	158832											
ELK4	2005	broad.mit.edu	37	chr1	205588203	205588203	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtcagtatgatgggtgtcTgcaatacacaaagcaaaaat	10	6	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205588203	A	A	205588203	5	1	201	1	0	0	0	0	0	0	1	0	5103	1594	55	5	224	5	ELK4	1	205588203	Splice_Site	SNP	T	TCGA-67-6217-01A-11D-1753-08	552568	205588203	43662418	34	158833											
FCAMR	83953	broad.mit.edu	37	chr1	207141112	207141112	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaccaagtagctctctgcActagggtgctattctgtttc	9	11	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207141112	T	T	207141112	1	4	201	0	1	0	0	0	0	0	0	0	5829	174	6	5		5	FCAMR	1	207141112	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	1552909	207141112	42109509	35	158834											
CR1	1378	broad.mit.edu	37	chr1	207741262	207741262	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaagcagtaaattacaCatgcgacccccacccagaca	7	13	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207741262	A	A	207741262	3	1	201	1	0	0	0	0	1	0	0	0	3872	478	17	3	4144	3	CR1	1	207741262	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	600150	207741262	41509359	36	158835											
KCNH1	3756	broad.mit.edu	37	chr1	211192451	211192451	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaggagacattataagGgaccaagatggctgtataga	12	4	0	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211192451	T	T	211192451	3	4	201	1	0	0	0	0	1	0	0	0	8101	1232	43	2	2287	2	KCNH1	1	211192451	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	3451189	211192451	38058170	37	158836											
USH2A	7399	broad.mit.edu	37	chr1	216108066	216108066	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaccagcccatcgatgaGcacccaaaggtttgtctctt	9	12	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216108066	A	A	216108066	3	1	201	1	0	0	0	0	1	0	0	0	17162	971	34	4	8556	4	USH2A	1	216108066	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	4915615	216108066	33142555	38	158837											
HLX	3142	broad.mit.edu	37	chr1	221053723	221053723	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctccagcaaagacctcaAatttggaattgaccgcattt	6	13	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	221053723	G	G	221053723	3	3	201	1	0	0	0	0	1	0	0	0	7283	14	1	5	526	5	HLX	1	221053723	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	4945657	221053723	28196898	39	158838											
MIA3	375056	broad.mit.edu	37	chr1	222835523	222835523	+	Intron	DEL	T	-	-													tgcaggaagtggggagaggaTtttttttttaatcctcctca							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	222835523	-	-	222835523	6	5	201	0	1	1	0	1	0	0	0	0	9658	1508	52	0		0	MIA3	1	222835523	Intron	DEL	T	TCGA-67-6217-01A-11D-1753-08	1781800	222835523	26415098	40	158839											
CDC42BPA	8476	broad.mit.edu	37	chr1	227452440	227452440	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagtccattatgtacataTtcttaatcttggccatgagg	8	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227452440	C	C	227452440	1	2	201	0	1	0	0	0	0	0	0	0	3102	1508	52	5		5	CDC42BPA	1	227452440	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	4616917	227452440	21798181	41	158840											
PGBD5	79605	broad.mit.edu	37	chr1	230492634	230492634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttacgtcctgcgtgggCctcacctgggtttgggaagg	15	11	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230492634	A	A	230492634	1	1	201	0	1	0	0	0	0	0	0	0	11879	754	26	3		3	PGBD5	1	230492634	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	3040194	230492634	18757987	42	158841											
FMN2	56776	broad.mit.edu	37	chr1	240458098	240458098	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggtggcttatggcaattTatattcttcttttttttcca	6	7	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240458098	C	C	240458098	1	2	201	0	1	0	0	0	0	0	0	0	6008	1769	61	5		5	FMN2	1	240458098	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	9965464	240458098	8792523	43	158842											
OR2M3	127062	broad.mit.edu	37	chr1	248366562	248366562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtacctcctcctcagcCaactgtccctcatggacctc	5	19	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248366562	A	A	248366562	3	1	201	1	0	0	0	0	1	0	0	0	11105	595	21	2	195	2	OR2M3	1	248366562	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	7908464	248366562	884059	44	158843											
OR2T10	127069	broad.mit.edu	37	chr1	248756148	248756148	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttaatatggaggtttctGcacgctcagcatttttttca	7	8	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248756148	T	T	248756148	3	4	201	1	0	0	0	0	1	0	0	0	11111	1328	46	3	19	3	OR2T10	1	248756148	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	389586	248756148	494473	45	158844											
ASXL2	55252	broad.mit.edu	37	chr2	26079361	26079361	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgggttacggaacttgtatCcagcaaagacagccttgtcc	10	11	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26079361	A	A	26079361	1	1	201	0	1	0	0	0	0	0	0	0	1071	870	30	3		3	ASXL2	2	26079361	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08		26079361	217120012	46	158845											
SNX17	9784	broad.mit.edu	37	chr2	27598579	27598579	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggcgggtcacctcctctgtGagtcgggttaggagggggaa	18	8	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27598579	C	C	27598579	1	2	201	0	1	0	0	0	0	0	0	0	15002	1305	45	4		4	SNX17	2	27598579	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1519218	27598579	215600794	47	158846											
USP34	9736	broad.mit.edu	37	chr2	61416021	61416021	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcccaccctaaaggtaAtgatagtagtccataaagct	6	12	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61416021	G	G	61416021	1	3	201	0	1	0	0	0	0	0	0	0	17192	116	4	5		5	USP34	2	61416021	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	33817442	61416021	181783352	48	158847											
ZNF638	27332	broad.mit.edu	37	chr2	71629097	71629097	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttgaaggaaacagaagaAatgtgtgtgatgcttgtctc	12	4	1	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71629097	C	C	71629097	3	2	201	1	0	0	0	0	1	0	0	0	18182	11	1	5	2767	5	ZNF638	2	71629097	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	10213076	71629097	171570276	49	158848											
MOGS	7841	broad.mit.edu	37	chr2	74690184	74690184	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatattattcaagagaaggCagtgggcattataaagagaa	10	3	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74690184	T	T	74690184	1	4	201	0	1	0	0	0	0	0	0	0	9791	725	25	4		4	MOGS	2	74690184	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	3061087	74690184	168509189	50	158849											
LRRTM4	80059	broad.mit.edu	37	chr2	77748707	77748707	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctctttgcctgtttcccCgtcttttatctgctaatgcc	6	14	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77748707	T	T	77748707	1	4	201	0	1	0	0	0	0	0	0	0	9129	667	23	4		4	LRRTM4	2	77748707	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	3058523	77748707	165450666	51	158850											
REG1A	5967	broad.mit.edu	37	chr2	79349939	79349939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttttgagtgaccactGcctctgttctggcccttccc	8	13	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79349939	T	T	79349939	1	4	201	0	1	0	0	0	0	0	0	0	13318	1334	46	3		3	REG1A	2	79349939	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1601232	79349939	163849434	52	158851											
C2orf51	200523	broad.mit.edu	37	chr2	88828809	88828809	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgatctgcacctggcccaGggtgaccccaaccaggtcct	10	17	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88828809	T	T	88828809	3	4	201	1	0	0	0	0	1	0	0	0	2195	991	35	2	370	2	C2orf51	2	88828809	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	9478870	88828809	154370564	53	158852											
C2orf51	200523	broad.mit.edu	37	chr2	88828903	88828903	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggccaaaggctacctgCtactgccagggtgtccctgt	12	12	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88828903	A	A	88828903	3	1	201	1	0	0	0	0	1	0	0	0	2195	796	28	3	464	3	C2orf51	2	88828903	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	94	88828903	154370470	54	158853											
MFSD9	84804	broad.mit.edu	37	chr2	103343262	103343262	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacatattgaggttctgggGgaagctacgtttgaaaaaaa	11	5	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103343262	A	A	103343262	1	1	201	0	1	0	0	0	0	0	0	0	9632	1247	43	4		4	MFSD9	2	103343262	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	14514359	103343262	139856111	55	158854											
GPR45	11250	broad.mit.edu	37	chr2	105859504	105859504	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctgtcctgctctgttcCctggcatgttggtcatagtc	11	11	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105859504	A	A	105859504	1	1	201	0	1	0	0	0	0	0	0	0	6761	638	22	2		2	GPR45	2	105859504	3'UTR	SNP	C	TCGA-67-6217-01A-11D-1753-08	2516242	105859504	137339869	56	158855											
RANBP2	5903	broad.mit.edu	37	chr2	109388339	109388339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggatggtaaaacttttGttatttcaaaaatcctctgt	8	5	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109388339	T	T	109388339	1	4	201	0	1	0	0	0	0	0	0	0	13136	1392	48	3		3	RANBP2	2	109388339	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	3528835	109388339	133811034	57	158856											
RGPD5	84220	broad.mit.edu	37	chr2	113127723	113127723	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tattccttccatcaacctatCgaagtccaaaccaactacga	3	14	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113127723	G	G	113127723	1	3	201	0	1	0	0	0	0	0	0	0	13397	899	31	4		4	RGPD5	2	113127723	3'UTR	SNP	C	TCGA-67-6217-01A-11D-1753-08	3739384	113127723	130071650	58	158857											
CNTNAP5	129684	broad.mit.edu	37	chr2	125530567	125530567	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaggagggccattttcgaCtgcagctgaacagccagttg	14	10	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530567	A	A	125530567	3	1	201	1	0	0	0	0	1	0	0	0	3682	564	20	3	2788	3	CNTNAP5	2	125530567	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	12402844	125530567	117668806	59	158858											
NCKAP5	344148	broad.mit.edu	37	chr2	133543111	133543111	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcatgcaatctttataacCccatttggttatcactgatg	6	9	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133543111	T	T	133543111	3	4	201	1	0	0	0	0	1	0	0	0	10318	623	22	4	4484	4	NCKAP5	2	133543111	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	8012544	133543111	109656262	60	158859											
LY75	4065	broad.mit.edu	37	chr2	160737468	160737468	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatggtccgtggctctgtaCcctgatccagagtgctctta	10	11	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160737468	T	T	160737468	1	4	201	0	1	0	0	0	0	0	0	0	9187	522	18	4		4	LY75	2	160737468	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	27194357	160737468	82461905	61	158860											
PDK1	5163	broad.mit.edu	37	chr2	173435514	173435514	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttacccccctattcaaGttcatgtcacgctgggtaat	8	11	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173435514	A	A	173435514	3	1	201	1	0	0	0	0	1	0	0	0	11769	1029	36	4	937	4	PDK1	2	173435514	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	12698046	173435514	69763859	62	158861											
CERKL	375298	broad.mit.edu	37	chr2	182423160	182423160	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaaaagtctcacatttgCtagtggggatgccagaagtc	11	8	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182423160	T	T	182423160	1	4	201	0	1	0	0	0	0	0	0	0	3298	812	28	4		4	CERKL	2	182423160	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	8987646	182423160	60776213	63	158862											
DNAH7	56171	broad.mit.edu	37	chr2	196825586	196825586	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaagacgaagataagggttCaagccatcttggattttttt	9	5	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196825586	A	A	196825586	3	1	201	1	0	0	0	0	1	0	0	0	4646	825	29	3	9977	3	DNAH7	2	196825586	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	14402426	196825586	46373787	64	158863											
MDH1B	130752	broad.mit.edu	37	chr2	207615733	207615733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctcatatctgtacaccCttgtttttctcagatcaacg	4	13	4	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207615733	A	A	207615733	3	1	201	1	0	0	0	0	1	0	0	0	9502	681	24	2	607	2	MDH1B	2	207615733	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	10790147	207615733	35583640	65	158864											
C2orf80	389073	broad.mit.edu	37	chr2	209049756	209049757	+	Splice_Site	DNP	CC	AA	AA													ctgatgccaatataatctccCcttaaaagcaagagagcagc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	209049757	AA	AA	209049756	5	1	201	1	0	0	0	0	0	0	1	0	2219	637	22	2	567	2	C2orf80	2	209049756	Splice_Site	DNP	CC	TCGA-67-6217-01A-11D-1753-08	1434023	209049756	34149617	66	158865											
IKZF2	22807	broad.mit.edu	37	chr2	213872367	213872367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccttcatgtaagctgggCtttgtttcctcttgggattt	9	10	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	213872367	A	A	213872367	3	1	201	1	0	0	0	0	1	0	0	0	7685	797	28	3	286	3	IKZF2	2	213872367	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	4822611	213872367	29327006	67	158866											
ANO7	50636	broad.mit.edu	37	chr2	242149890	242149890	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctcccgttaggcctctcGcatcgccagcctcacggggt	11	16	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242149890	A	A	242149890	3	1	201	1	0	0	0	0	1	0	0	0	702	1087	38	4	1758	4	ANO7	2	242149890	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	28277523	242149890	1049483	68	158867											
FBXL2	25827	broad.mit.edu	37	chr3	33418909	33418909	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtggttttgggtgtgcaAaagactaccttcagaaaaga	13	5	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33418909	G	G	33418909	1	3	201	0	1	0	0	0	0	0	0	0	5773	29	1	5		5	FBXL2	3	33418909	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08		33418909	164603521	69	158868											
SCN10A	6336	broad.mit.edu	37	chr3	38770309	38770309	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccaggatgatggtgaggttCcccagtgcccccactgagtt	13	12	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38770309	G	G	38770309	2	3	201	1	0	0	0	0	0	0	0	1	14025	842	30	4		4	SCN10A	3	38770309	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	5351400	38770309	159252121	70	158869											
COL7A1	1294	broad.mit.edu	37	chr3	48630019	48630019	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactggtccgagctgtcccGctcacagcctccccgatgct	9	18	2	0	rs141801873		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48630019	T	T	48630019	3	4	201	1	0	0	0	0	1	0	0	0	3736	1078	38	3	8322	3	COL7A1	3	48630019	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	9859710	48630019	149392411	71	158870											
RNF123	63891	broad.mit.edu	37	chr3	49744330	49744330	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatgccactgtctactcccAggtgtgctggtattgcagct	10	13	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49744330	T	T	49744330	3	4	201	1	0	0	0	0	1	0	0	0	13544	202	7	5	2593	5	RNF123	3	49744330	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	1114311	49744330	148278100	72	158871											
PROS1	5627	broad.mit.edu	37	chr3	93593234	93593234	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggcattcactggtgtgGcactgaatggaacatctgta	11	7	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93593234	A	A	93593234	3	1	201	1	0	0	0	0	1	0	0	0	12664	1203	42	4	148	4	PROS1	3	93593234	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	43848904	93593234	104429196	73	158872											
STXBP5L	9515	broad.mit.edu	37	chr3	120998798	120998798	+	Frame_Shift_Del	DEL	T	-	-													tcgaaaaaacaaacagttcaTtgcaggtaggagataaaaca							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	120998798	-	-	120998798	7	5	201	1	0	1	0	1	0	0	0	0	15475	1493	52	0	2175	0	STXBP5L	3	120998798	Frame_Shift_Del	DEL	T	TCGA-67-6217-01A-11D-1753-08	27405564	120998798	77023632	74	158873											
HCLS1	3059	broad.mit.edu	37	chr3	121356023	121356023	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtgtttctccgtctctcCcttgtagtcatatcccagag	7	14	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121356023	G	G	121356023	3	3	201	1	0	0	0	0	1	0	0	0	7061	632	22	4	957	4	HCLS1	3	121356023	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	357225	121356023	76666407	75	158874											
GOLGB1	2804	broad.mit.edu	37	chr3	121413585	121413585	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taattgattcataagcctctCttccaaatcatctttctctt	2	11	5	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121413585	A	A	121413585	4	1	201	1	0	0	0	0	0	1	0	0	6629	922	32	3	4049	3	GOLGB1	3	121413585	Nonsense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	57562	121413585	76608845	76	158875											
PDIA5	10954	broad.mit.edu	37	chr3	122843092	122843092	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catttgcatccgtgactgagCccacgttgtttctccacgtt	8	13	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122843092	G	G	122843092	1	3	201	0	1	0	0	0	0	0	0	0	11765	754	26	4		4	PDIA5	3	122843092	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1429507	122843092	75179338	77	158876											
KALRN	8997	broad.mit.edu	37	chr3	124377365	124377365	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatgacgcctactttgagGtaagctgtgcaggctttgct	12	8	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124377365	A	A	124377365	5	1	201	1	0	0	0	0	0	0	1	0	8045	1275	44	4	6443	4	KALRN	3	124377365	Splice_Site	SNP	G	TCGA-67-6217-01A-11D-1753-08	1534273	124377365	73645065	78	158877											
SRPRB	58477	broad.mit.edu	37	chr3	133525539	133525539	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attccgggaaaacgttgctcTttgtcagggtaaatgatttc	10	7	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133525539	G	G	133525539	3	3	201	1	0	0	0	0	1	0	0	0	15281	1609	56	5	247	5	SRPRB	3	133525539	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	9148174	133525539	64496891	79	158878											
CLDN18	51208	broad.mit.edu	37	chr3	137742593	137742593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgccctgaaatgcatccGcattggcagcatggaggact	11	11	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137742593	A	A	137742593	3	1	201	1	0	0	0	0	1	0	0	0	3510	1087	38	4	544	4	CLDN18	3	137742593	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	4217054	137742593	60279837	80	158879											
RSRC1	51319	broad.mit.edu	37	chr3	158261251	158261251	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgctatcaagtaccaagAtgacaattccctggcccatc	6	13	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158261251	G	G	158261251	3	3	201	1	0	0	0	0	1	0	0	0	13825	333	12	5	917	5	RSRC1	3	158261251	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	20518658	158261251	39761179	81	158880											
MECOM	2122	broad.mit.edu	37	chr3	168840508	168840508	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtatgtgacagcatgtgttTctccaggctgttaagagaac	11	7	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168840508	C	C	168840508	3	2	201	1	0	0	0	0	1	0	0	0	9515	1792	62	5	2932	5	MECOM	3	168840508	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	10579257	168840508	29181922	82	158881											
KLHL24	54800	broad.mit.edu	37	chr3	183397003	183397003	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcacaggggtagctgcaAtgcccaggccagtgtcctat	11	12	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183397003	G	G	183397003	3	3	201	1	0	0	0	0	1	0	0	0	8450	101	4	5	1754	5	KLHL24	3	183397003	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	14556495	183397003	14625427	83	158882											
NCBP2	22916	broad.mit.edu	37	chr3	196664485	196664485	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcgtcccatttatgtaccGcatggcgttttccgcatctg	9	13	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196664485	A	A	196664485	3	1	201	1	0	0	0	0	1	0	0	0	10307	1086	38	4	183	4	NCBP2	3	196664485	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	13267482	196664485	1357945	84	158883											
NSUN7	79730	broad.mit.edu	37	chr4	40776508	40776508	+	Intron	DEL	T	-	-													atgtgatgagaagcattaccTttttaagaggtgggggtggc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40776508	-	-	40776508	6	5	201	0	1	1	0	1	0	0	0	0	10778	1624	56	0		0	NSUN7	4	40776508	Intron	DEL	T	TCGA-67-6217-01A-11D-1753-08		40776508	150377768	85	158884											
USP46	64854	broad.mit.edu	37	chr4	53494103	53494103	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggcttaaatacattatacTgcatactactcaccattctc	4	11	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53494103	A	A	53494103	1	1	201	0	1	0	0	0	0	0	0	0	17204	1595	55	5		5	USP46	4	53494103	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	12717595	53494103	137660173	86	158885											
UGT2B7	7364	broad.mit.edu	37	chr4	69978338	69978338	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggttccagtaccactctttgGatgtgattgggttcctgctg	12	9	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69978338	A	A	69978338	3	1	201	1	0	0	0	0	1	0	0	0	17088	1174	41	4	1496	4	UGT2B7	4	69978338	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	16484235	69978338	121175938	87	158886											
UGT2A1	10941	broad.mit.edu	37	chr4	70460381	70460381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtagatcccattagttccaCcatgagtgataaaagctttg	8	9	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70460381	A	A	70460381	3	1	201	1	0	0	0	0	1	0	0	0	17079	507	18	3	473	3	UGT2A1	4	70460381	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	482043	70460381	120693895	88	158887											
BANK1	55024	broad.mit.edu	37	chr4	102839313	102839313	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgctgaaaggcatggtcaCaaagaactcaagaaaatctt	8	7	3	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102839313	T	T	102839313	2	4	201	1	0	0	0	0	0	0	0	1	1314	477	17	4		4	BANK1	4	102839313	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	32378932	102839313	88314963	89	158888											
TACR3	6870	broad.mit.edu	37	chr4	104512654	104512654	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtttttaccttttattcaGacagcagtagatgatgggat	9	5	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104512654	T	T	104512654	3	4	201	1	0	0	0	0	1	0	0	0	15626	933	33	3	330	3	TACR3	4	104512654	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	1673341	104512654	86641622	90	158889											
CYP2U1	113612	broad.mit.edu	37	chr4	108868619	108868619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgccctacacagaagCcaccatcatggaagtgcaga	9	13	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108868619	A	A	108868619	3	1	201	1	0	0	0	0	1	0	0	0	4208	739	26	3	1224	3	CYP2U1	4	108868619	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	4355965	108868619	82285657	91	158890											
NDST4	64579	broad.mit.edu	37	chr4	115791901	115791901	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtttctttccttccacccCaagagagaatgttaaatgtt	6	9	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115791901	A	A	115791901	1	1	201	0	1	0	0	0	0	0	0	0	10353	609	21	2		2	NDST4	4	115791901	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	6923282	115791901	75362375	92	158891											
PCDH18	54510	broad.mit.edu	37	chr4	138453244	138453244	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcattcatttggtgcattGgtcagtttatgagatttccc	9	7	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138453244	T	T	138453244	1	4	201	0	1	0	0	0	0	0	0	0	11607	1363	47	2		2	PCDH18	4	138453244	5'UTR	SNP	G	TCGA-67-6217-01A-11D-1753-08	22661343	138453244	52701032	93	158892											
ODZ3	55714	broad.mit.edu	37	chr4	183675836	183675836	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacaacagatggagaaatctCcttagtggccggaatacctt	9	10	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183675836	T	T	183675836	3	4	201	1	0	0	0	0	1	0	0	0	10931	855	30	4	4398	4	ODZ3	4	183675836	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	45222592	183675836	7478440	94	158893											
SLC9A3	6550	broad.mit.edu	37	chr5	484825	484825	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggacactgggtagaggaCgccctttgtggccgtgccgg	17	10	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	484825	T	T	484825	1	4	201	0	1	0	0	0	0	0	0	0	14827	551	19	4		4	SLC9A3	5	484825	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08		484825	180430435	95	158894											
IRX1	79192	broad.mit.edu	37	chr5	3599484	3599484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccgcgagagcaccagcaCgctcaaggcctggctcaacg	11	17	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3599484	A	A	3599484	3	1	201	1	0	0	0	0	1	0	0	0	7913	536	19	3	428	3	IRX1	5	3599484	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	3114659	3599484	177315776	96	158895											
CDH12	1010	broad.mit.edu	37	chr5	21975427	21975427	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcatcaatggtaaaaacgGtgccagcgccatctcctgag	9	11	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21975427	A	A	21975427	3	1	201	1	0	0	0	0	1	0	0	0	3128	1261	44	4	2125	4	CDH12	5	21975427	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	18375943	21975427	158939833	97	158896											
ANKRD55	79722	broad.mit.edu	37	chr5	55488772	55488772	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaagacttccgtgctgtggGattgaaaaccaaagcaggca	11	8	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55488772	T	T	55488772	1	4	201	0	1	0	0	0	0	0	0	0	681	1189	41	3		3	ANKRD55	5	55488772	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	33513345	55488772	125426488	98	158897											
DEPDC1B	55789	broad.mit.edu	37	chr5	59893540	59893540	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaccattcactcaaaacaAcaacagtggtctctagcacc	4	15	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59893540	G	G	59893540	1	3	201	0	1	0	0	0	0	0	0	0	4480	58	2	5		5	DEPDC1B	5	59893540	3'UTR	SNP	A	TCGA-67-6217-01A-11D-1753-08	4404768	59893540	121021720	99	158898											
NLN	57486	broad.mit.edu	37	chr5	65088538	65088538	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtttttttagaaaacttcTtgactgctgtcaggtttctg	8	6	3	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65088538	C	C	65088538	1	2	201	0	1	0	0	0	0	0	0	0	10562	1624	56	5		5	NLN	5	65088538	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	5194998	65088538	115826722	100	158899											
CCNB1	891	broad.mit.edu	37	chr5	68467140	68467140	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggaaacatctggatgtgCccctgcagaagaagacctgt	11	9	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68467140	A	A	68467140	3	1	201	1	0	0	0	0	1	0	0	0	2941	739	26	3	421	3	CCNB1	5	68467140	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	3378602	68467140	112448120	101	158900											
CMYA5	202333	broad.mit.edu	37	chr5	79030937	79030937	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaggttattgatgatgctGatgagggaaagaaaccatca	11	5	1	5			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79030937	C	C	79030937	3	2	201	1	0	0	0	0	1	0	0	0	3622	1290	45	4	6355	4	CMYA5	5	79030937	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	10563797	79030937	101884323	102	158901											
ATG10	83734	broad.mit.edu	37	chr5	81460256	81460256	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggatgattgtgaagtgatTgaaactgcagcagcgtccga	13	6	0	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81460256	G	G	81460256	3	3	201	1	0	0	0	0	1	0	0	0	1093	1800	63	5	265	5	ATG10	5	81460256	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	2429319	81460256	99455004	103	158902											
FBN2	2201	broad.mit.edu	37	chr5	127599195	127599195	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagcagccgtaattgcagGggttcttggaggacgagcac	15	8	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127599195	T	T	127599195	3	4	201	1	0	0	0	0	1	0	0	0	5760	1232	43	2	636	2	FBN2	5	127599195	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	46138939	127599195	53316065	104	158903											
PCDHA8	56140	broad.mit.edu	37	chr5	140222229	140222229	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgggccaccgccagcttGtctgtggaggtggccgacgt	16	12	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140222229	A	A	140222229	2	1	201	1	0	0	0	0	0	0	0	1	11624	1368	48	4		4	PCDHA8	5	140222229	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	12623034	140222229	40693031	105	158904											
PCDHB6	56130	broad.mit.edu	37	chr5	140529991	140529991	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaacttgacaaaggacctGggactgagggtgggggagct	17	8	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140529991	A	A	140529991	2	1	201	1	0	0	0	0	0	0	0	1	11640	1335	47	4		4	PCDHB6	5	140529991	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	307762	140529991	40385269	106	158905											
PCDHB10	56126	broad.mit.edu	37	chr5	140573077	140573077	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtaaattcttacaaaataAatatacaggcaatggacggt	7	5	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140573077	T	T	140573077	3	4	201	1	0	0	0	0	1	0	0	0	11629	14	1	5	954	5	PCDHB10	5	140573077	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	43086	140573077	40342183	107	158906											
PCDHB12	56124	broad.mit.edu	37	chr5	140590351	140590351	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgcacaatggcgaggtGcgcaccgccaggctgctgag	17	12	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140590351	A	A	140590351	2	1	201	1	0	0	0	0	0	0	0	1	11631	1306	46	4		4	PCDHB12	5	140590351	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	17274	140590351	40324909	108	158907											
FAT2	2196	broad.mit.edu	37	chr5	150943179	150943179	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaaattctcggtccaggGgtgccagagtctgaatcatt	11	9	3	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150943179	T	T	150943179	3	4	201	1	0	0	0	0	1	0	0	0	5747	1232	43	2	9856	2	FAT2	5	150943179	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	10352828	150943179	29972081	109	158908											
ITK	3702	broad.mit.edu	37	chr5	156641423	156641423	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgagggtgtcaggaacagAatgcaaaattctacattttc	9	6	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156641423	T	T	156641423	1	4	201	0	1	0	0	0	0	0	0	0	7979	261	9	5		5	ITK	5	156641423	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	5698244	156641423	24273837	110	158909											
ADAM19	8728	broad.mit.edu	37	chr5	156907854	156907854	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctggaggagggtgggaGgagctcagaggcggccagac	20	8	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156907854	T	T	156907854	1	4	201	0	1	0	0	0	0	0	0	0	240	1015	35	2		2	ADAM19	5	156907854	3'UTR	SNP	G	TCGA-67-6217-01A-11D-1753-08	266431	156907854	24007406	111	158910											
EBF1	1879	broad.mit.edu	37	chr5	158223455	158223455	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccgtcgtccatccttcactCgggctgatggctttgataca	9	14	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158223455	T	T	158223455	2	4	201	1	0	0	0	0	0	0	0	1	4920	871	31	4		4	EBF1	5	158223455	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	1315601	158223455	22691805	112	158911											
RASGEF1C	255426	broad.mit.edu	37	chr5	179545589	179545590	+	Intron	DNP	CC	AA	AA													cctgctgcagcccccctgggCcaacgtggccccgacctacc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	179545590	AA	AA	179545589	1	1	201	0	1	0	0	0	0	0	0	0	13179	754	26	3		3	RASGEF1C	5	179545589	Intron	DNP	CC	TCGA-67-6217-01A-11D-1753-08	21322134	179545589	1369671	113	158912											
NQO2	4835	broad.mit.edu	37	chr6	3006783	3006783	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggaatccaccttcttaCgctatggcaggtaatgattc	9	9	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3006783	T	T	3006783	1	4	201	1	0	0	0	0	0	0	0	0	10707	551	19	4		4	NQO2	6	3006783	Translation_Start_Site	SNP	C	TCGA-67-6217-01A-11D-1753-08		3006783	168108284	114	158913											
RPP40	10799	broad.mit.edu	37	chr6	5000118	5000118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcttcataagtgtctttatCcagtgacaaaattaatttcc	4	8	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5000118	A	A	5000118	3	1	201	1	0	0	0	0	1	0	0	0	13725	855	30	3	753	3	RPP40	6	5000118	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1993335	5000118	166114949	115	158914											
SCAND3	114821	broad.mit.edu	37	chr6	28542849	28542849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctaattcattttctgtatGcaagctggcaacaagttctt	6	8	4	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28542849	T	T	28542849	3	4	201	1	0	0	0	0	1	0	0	0	13988	1319	46	3	2352	3	SCAND3	6	28542849	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	23542731	28542849	142572218	116	158915											
HLA-G	3135	broad.mit.edu	37	chr6	29974550	29974550	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgggaggagggtcgggCgggtctcagcccctcctcgc	18	15	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29974550	T	T	29974550	1	4	201	0	1	0	0	0	0	0	0	0	7279	783	27	4		4	HLA-G	6	29974550	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1431701	29974550	141140517	117	158916											
HSPA1L	3305	broad.mit.edu	37	chr6	31779552	31779552	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttagcatcaaaaacagtgttCtggggattcattgctacctg	9	8	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31779552	T	T	31779552	2	4	201	1	0	0	0	0	0	0	0	1	7479	912	32	4		4	HSPA1L	6	31779552	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	1805002	31779552	139335515	118	158917											
TNXB	7148	broad.mit.edu	37	chr6	32011892	32011893	+	Missense_Mutation	DNP	GG	TT	TT													ttcactgaattggaggtcacGggggctctccagaactgcag							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32011893	TT	TT	32011892	3	4	201	1	0	0	0	0	1	0	0	0	16469	1116	39	1	3485	1	TNXB	6	32011892	Missense_Mutation	DNP	GG	TCGA-67-6217-01A-11D-1753-08	232340	32011892	139103175	119	158918											
NOTCH4	4855	broad.mit.edu	37	chr6	32184793	32184794	+	Missense_Mutation	DNP	GG	TT	TT													agctggctccaacgggacatGggtcactcaggcactcatcc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32184794	TT	TT	32184793	3	4	201	1	0	0	0	0	1	0	0	0	10646	1348	47	2	4301	2	NOTCH4	6	32184793	Missense_Mutation	DNP	GG	TCGA-67-6217-01A-11D-1753-08	172901	32184793	138930274	120	158919											
C6orf127	340204	broad.mit.edu	37	chr6	35755685	35755685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtccctgcctgcggaaCctgacttgtatatattcaaa	9	11	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35755685	A	A	35755685	3	1	201	1	0	0	0	0	1	0	0	0	2350	506	18	3	274	3	C6orf127	6	35755685	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	3570892	35755685	135359382	121	158920											
TBC1D22B	55633	broad.mit.edu	37	chr6	37250728	37250728	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataacctggagactcctgtcGgtgagttctacccactgtgt	10	11	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37250728	A	A	37250728	2	1	201	1	0	0	0	0	0	0	0	1	15731	1130	39	4		4	TBC1D22B	6	37250728	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	1495043	37250728	133864339	122	158921											
MDGA1	266727	broad.mit.edu	37	chr6	37626189	37626189	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctacctgccgtcttggtccAccgtacctgggccgccaggc	12	17	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37626189	G	G	37626189	3	3	201	1	0	0	0	0	1	0	0	0	9499	159	6	5	2713	5	MDGA1	6	37626189	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	375461	37626189	133488878	123	158922											
OPN5	221391	broad.mit.edu	37	chr6	47776175	47776175	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaattacactctctttgtttCaaaatccggcagggttcaag	8	9	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47776175	A	A	47776175	1	1	201	0	1	0	0	0	0	0	0	0	10977	841	29	3		3	OPN5	6	47776175	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	10149986	47776175	123338892	124	158923											
HTR1E	3354	broad.mit.edu	37	chr6	87726029	87726029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgtgtcctcggaagtggCcgactttctgacgtggctcg	13	13	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87726029	A	A	87726029	3	1	201	1	0	0	0	0	1	0	0	0	7509	739	26	3	979	3	HTR1E	6	87726029	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	39949854	87726029	83389038	125	158924											
RNGTT	8732	broad.mit.edu	37	chr6	89650746	89650746	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgaagaacaagactgaaCaaagtatattaaatcagtga	7	6	1	5			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89650746	G	G	89650746	1	3	201	0	1	0	0	0	0	0	0	0	13614	493	17	4		4	RNGTT	6	89650746	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1924717	89650746	81464321	126	158925											
CASP8AP2	9994	broad.mit.edu	37	chr6	90556331	90556331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcagatgatgacaatgGtgatggaacaagtttatttg	13	4	0	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90556331	T	T	90556331	3	4	201	1	0	0	0	0	1	0	0	0	2704	1261	44	3	25	3	CASP8AP2	6	90556331	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	905585	90556331	80558736	127	158926											
BACH2	60468	broad.mit.edu	37	chr6	90660894	90660894	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggctgggctgtttccGgtccatctcgacatcccccg	13	15	1	0	rs148083597	byFrequency	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90660894	A	A	90660894	3	1	201	1	0	0	0	0	1	0	0	0	1289	1115	39	4	1606	4	BACH2	6	90660894	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	104563	90660894	80454173	128	158927											
EPHA7	2045	broad.mit.edu	37	chr6	94066483	94066483	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaagagcctctgggatcGgcttaagtcagaaactccat	10	10	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94066483	T	T	94066483	2	4	201	1	0	0	0	0	0	0	0	1	5214	1124	39	1		1	EPHA7	6	94066483	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	3405589	94066483	77048584	129	158928											
PTPRK	5796	broad.mit.edu	37	chr6	128330424	128330424	+	Intron	DEL	A	-	-													gttgctgctgctaaatggatAaaaaaaaaaatcagttactg							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128330424	-	-	128330424	6	5	201	0	1	1	0	1	0	0	0	0	12913	377	13	0		0	PTPRK	6	128330424	Intron	DEL	A	TCGA-67-6217-01A-11D-1753-08	34263941	128330424	42784643	130	158929											
ENPP3	5169	broad.mit.edu	37	chr6	131992595	131992595	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatggggggatagttcatGgctgaattcaggctgtgaag	15	6	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131992595	T	T	131992595	1	4	201	0	1	0	0	0	0	0	0	0	5173	1363	47	2		2	ENPP3	6	131992595	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	3662171	131992595	39122472	131	158930											
ENPP3	5169	broad.mit.edu	37	chr6	132041400	132041400	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttttgaatttggatgacatCtaataataataatctgacta	5	4	2	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132041400	A	A	132041400	1	1	201	0	1	0	0	0	0	0	0	0	5173	928	32	3		3	ENPP3	6	132041400	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	48805	132041400	39073667	132	158931											
SYNE1	23345	broad.mit.edu	37	chr6	152804280	152804280	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgtggacctgttgaacGgttatttcctctctcagggc	10	12	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152804280	T	T	152804280	2	4	201	1	0	0	0	0	0	0	0	1	15564	1103	39	1		1	SYNE1	6	152804280	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	20762880	152804280	18310787	133	158932											
DLL1	28514	broad.mit.edu	37	chr6	170599213	170599213	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccgccagggccagcgcGcaccgactgcccatgctgct	12	18	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170599213	T	T	170599213	4	4	201	1	0	0	0	0	0	1	0	0	4606	1079	38	3	2200	3	DLL1	6	170599213	Nonsense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	17794933	170599213	515854	134	158933											
IQCE	23288	broad.mit.edu	37	chr7	2649924	2649924	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacctcagcatctgcgtcGtgtctctttgtgcttttgtt	8	11	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2649924	T	T	2649924	1	4	201	0	1	0	0	0	0	0	0	0	7876	1160	40	3		3	IQCE	7	2649924	3'UTR	SNP	G	TCGA-67-6217-01A-11D-1753-08		2649924	156488739	135	158934											
SDK1	221935	broad.mit.edu	37	chr7	3991446	3991446	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctttggaagacgcctcacCatcagcaacccgacgtccgc	9	16	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3991446	T	T	3991446	2	4	201	1	0	0	0	0	0	0	0	1	14081	581	21	4		4	SDK1	7	3991446	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	1341522	3991446	155147217	136	158935											
AOAH	313	broad.mit.edu	37	chr7	36763656	36763656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcccattcgagaggctgGgcctggactggtcatcgttg	15	10	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36763656	T	T	36763656	3	4	201	1	0	0	0	0	1	0	0	0	728	1232	43	2	2054	2	AOAH	7	36763656	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	32772210	36763656	122375007	137	158936											
AMPH	273	broad.mit.edu	37	chr7	38424409	38424409	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgagctccttcttgcagtActtgttgccctaatctaagc	7	12	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38424409	T	T	38424409	1	4	201	0	1	0	0	0	0	0	0	0	588	406	14	5		5	AMPH	7	38424409	3'UTR	SNP	A	TCGA-67-6217-01A-11D-1753-08	1660753	38424409	120714254	138	158937											
SUN3	256979	broad.mit.edu	37	chr7	48046725	48046725	+	Intron	DEL	C	-	-													gacatccgcgctaaccaccaCcccaccctgcccaacccgcc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48046725	-	-	48046725	6	5	201	0	1	1	0	1	0	0	0	0	15511	522	18	0		0	SUN3	7	48046725	Intron	DEL	C	TCGA-67-6217-01A-11D-1753-08	9622316	48046725	111091938	139	158938											
ABCA13	154664	broad.mit.edu	37	chr7	48413973	48413973	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgacaaccgcctttggacaAggggtattttttattacatt	8	8	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48413973	T	T	48413973	3	4	201	1	0	0	0	0	1	0	0	0	31	69	3	5	11126	5	ABCA13	7	48413973	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	367248	48413973	110724690	140	158939											
IKZF1	10320	broad.mit.edu	37	chr7	50468246	50468246	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatccttttgagtgcaacaTgtgcggctaccacagccagg	11	11	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50468246	A	A	50468246	3	1	201	1	0	0	0	0	1	0	0	0	7684	1464	51	5	1507	5	IKZF1	7	50468246	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	2054273	50468246	108670417	141	158940											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	201	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	4791269	55259515	103879148	142	158941											
CALN1	83698	broad.mit.edu	37	chr7	71252892	71252892	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcttctgggaatgcactggTggtgggagaagcaggtgtgg	19	5	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71252892	C	C	71252892	1	2	201	0	1	0	0	0	0	0	0	0	2617	1711	59	5		5	CALN1	7	71252892	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	15993377	71252892	87885771	143	158942											
BAZ1B	9031	broad.mit.edu	37	chr7	72874073	72874073	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggaaaggattttaaaaccaGactgagaaaaggcccagagg	12	6	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72874073	A	A	72874073	1	1	201	0	1	0	0	0	0	0	0	0	1335	957	33	4		4	BAZ1B	7	72874073	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1621181	72874073	86264590	144	158943											
KIAA1324L	222223	broad.mit.edu	37	chr7	86568041	86568041	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaccactgctgtcatactTtatgggtgacttctggttta	10	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86568041	A	A	86568041	1	1	201	0	1	0	0	0	0	0	0	0	8294	1856	64	5		5	KIAA1324L	7	86568041	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	13693968	86568041	72570622	145	158944											
ABCB1	5243	broad.mit.edu	37	chr7	87150804	87150804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcagagtctcctaatgagCccaaacagctgaggaaattc	9	10	2	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87150804	A	A	87150804	1	1	201	0	1	0	0	0	0	0	0	0	40	754	26	3		3	ABCB1	7	87150804	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	582763	87150804	71987859	146	158945											
PEX1	5189	broad.mit.edu	37	chr7	92130962	92130962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatccgcggagagccttttgGaagtccaatgttgttaaaac	10	8	0	1	rs145430946	byFrequency	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92130962	T	T	92130962	3	4	201	1	0	0	0	0	1	0	0	0	11830	1165	41	3	1449	3	PEX1	7	92130962	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	4980158	92130962	67007701	147	158946											
CALCR	799	broad.mit.edu	37	chr7	93113352	93113352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacagcagtagtcagcagcCcaaacatcatcagttttttt	6	11	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93113352	A	A	93113352	1	1	201	0	1	0	0	0	0	0	0	0	2605	638	22	2		2	CALCR	7	93113352	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	982390	93113352	66025311	148	158947											
MUC17	140453	broad.mit.edu	37	chr7	100682069	100682069	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctagtgaaggaaccactccgTtagcaagtatgcctgtcagc	10	11	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100682069	A	A	100682069	3	1	201	1	0	0	0	0	1	0	0	0	10068	1722	60	5	7382	5	MUC17	7	100682069	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	7568717	100682069	58456594	149	158948											
LAMB4	22798	broad.mit.edu	37	chr7	107708591	107708591	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatccgactgagccctggggGtgacacttgcaggctgcaag	15	11	0	2	rs140790836	byFrequency;by1000genomes	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107708591	C	C	107708591	3	2	201	1	0	0	0	0	1	0	0	0	8685	1252	44	4	3033	4	LAMB4	7	107708591	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	7026522	107708591	51430072	150	158949											
TMEM168	64418	broad.mit.edu	37	chr7	112423771	112423771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgccaggaaactgctccCaaaatcgctgttgcaagaag	9	12	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112423771	A	A	112423771	3	1	201	1	0	0	0	0	1	0	0	0	16206	593	21	2	999	2	TMEM168	7	112423771	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	4715180	112423771	46714892	151	158950											
SMO	6608	broad.mit.edu	37	chr7	128851599	128851599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatatttctgtcacccctGtggcaactccaggtatgaga	10	10	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128851599	T	T	128851599	3	4	201	1	0	0	0	0	1	0	0	0	14914	1377	48	3	1966	3	SMO	7	128851599	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	16427828	128851599	30287064	152	158951											
AKR1B15	441282	broad.mit.edu	37	chr7	134254279	134254279	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcactggccacagggattcAaggtttgagtgactcccttt	10	10	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134254279	G	G	134254279	3	3	201	1	0	0	0	0	1	0	0	0	468	131	5	5	443	5	AKR1B15	7	134254279	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	5402680	134254279	24884384	153	158952											
WEE2	494551	broad.mit.edu	37	chr7	141418750	141418750	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgacccaagtagaattcaTtgcagtcacctcaaaagtct	6	10	4	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141418750	G	G	141418750	1	3	201	0	1	0	0	0	0	0	0	0	17472	1508	52	5		5	WEE2	7	141418750	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	7164471	141418750	17719913	154	158953											
TRPV6	55503	broad.mit.edu	37	chr7	142583208	142583208	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctggaaccatctgcagaaCttgctccataggcagagaat	9	11	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142583208	T	T	142583208	2	4	201	1	0	0	0	0	0	0	0	1	16725	564	20	4		4	TRPV6	7	142583208	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	1164458	142583208	16555455	155	158954											
TAS2R40	259286	broad.mit.edu	37	chr7	142919080	142919080	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaataaccattaatgagggCggcagaaattataacattga	9	5	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142919080	A	A	142919080	1	1	201	0	1	0	0	0	0	0	0	0	15697	783	27	3		3	TAS2R40	7	142919080	5'Flank	SNP	C	TCGA-67-6217-01A-11D-1753-08	335872	142919080	16219583	156	158955											
GSTK1	373156	broad.mit.edu	37	chr7	142964560	142964560	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggataaaggaaatagttcCtcttggcaaggacagatctc	11	7	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142964560	G	G	142964560	1	3	201	0	1	0	0	0	0	0	0	0	6902	696	24	4		4	GSTK1	7	142964560	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	45480	142964560	16174103	157	158956			1	122		4	3	600	N	T_C	2.587749e-05
GSTK1	373156	broad.mit.edu	37	chr7	142965072	142965072	+	Intron	SNP	C	G	G													cacctggggccacagagcctCttagacctctttgcttctgt							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142965072	G	G	142965072	1	3	201	0	1	0	0	0	0	0	0	0	6902	928	32	4		4	GSTK1	7	142965072	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	512	142965072	16173591	158	158957	673	2	1	122		4	3	600	N	T_C	2.587749e-05
GSTK1	373156	broad.mit.edu	37	chr7	142965074	142965074	+	Intron	SNP	T	G	G													cctggggccacagagcctctTagacctctttgcttctgtga							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142965074	G	G	142965074	1	3	201	0	1	0	0	0	0	0	0	0	6902	1769	61	5		5	GSTK1	7	142965074	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	2	142965074	16173589	159	158958	673	2	1	122		4	3	600	N	T_C	2.587749e-05
GSTK1	373156	broad.mit.edu	37	chr7	142965159	142965159	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcctttgccttcctcCttgcattgtaactgctttct	5	15	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142965159	G	G	142965159	1	3	201	0	1	0	0	0	0	0	0	0	6902	696	24	4		4	GSTK1	7	142965159	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	85	142965159	16173504	160	158959			1	122		4	3	600	N	T_C	2.587749e-05
MLL3	58508	broad.mit.edu	37	chr7	151873473	151873473	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtccagacatgctactgGtaccagactgacttgtttga	12	9	0	4	rs141345566		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151873473	A	A	151873473	3	1	201	1	0	0	0	0	1	0	0	0	9715	1261	44	4	5758	4	MLL3	7	151873473	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	8908314	151873473	7265190	161	158960											
CSMD1	64478	broad.mit.edu	37	chr8	2823383	2823383	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttccatgacatagcctGggttacactgatagctcaca	8	12	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2823383	T	T	2823383	3	4	201	1	0	0	0	0	1	0	0	0	3978	1348	47	2	1548	2	CSMD1	8	2823383	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08		2823383	143540639	162	158961											
HGSNAT	138050	broad.mit.edu	37	chr8	43033424	43033424	+	Intron	DEL	A	-	-													atattcaggttgaaatatggAaactatatgttgtaatttga							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43033424	-	-	43033424	6	5	201	0	1	1	0	1	0	0	0	0	7155	261	9	0		0	HGSNAT	8	43033424	Intron	DEL	A	TCGA-67-6217-01A-11D-1753-08	40210041	43033424	103330598	163	158962											
OPRK1	4986	broad.mit.edu	37	chr8	54142117	54142118	+	Missense_Mutation	DNP	GG	TT	TT													gctccccagagcctccaccaGgatgaatatgtgaatgggag							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54142118	TT	TT	54142117	3	4	201	1	0	0	0	0	1	0	0	0	10979	991	35	2	263	2	OPRK1	8	54142117	Missense_Mutation	DNP	GG	TCGA-67-6217-01A-11D-1753-08	11108693	54142117	92221905	164	158963											
VPS13B	157680	broad.mit.edu	37	chr8	100789192	100789192	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caactaggcacaggtactctTttttttagcatcagaataac	6	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100789192	G	G	100789192	1	3	201	0	1	0	0	0	0	0	0	0	17317	1856	64	5		5	VPS13B	8	100789192	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	46647075	100789192	45574830	165	158964											
TRPS1	7227	broad.mit.edu	37	chr8	116631634	116631634	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatttaaagtcctgaagctCtggagacagaggtgccgggt	14	8	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116631634	A	A	116631634	4	1	201	1	0	0	0	0	0	1	0	0	16718	922	32	3	3213	3	TRPS1	8	116631634	Nonsense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	15842442	116631634	29732388	166	158965											
MTSS1	9788	broad.mit.edu	37	chr8	125711767	125711767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcctccatctgcttacCacgtgtgttggtggccatgt	11	12	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125711767	A	A	125711767	3	1	201	1	0	0	0	0	1	0	0	0	10056	608	21	2	2107	2	MTSS1	8	125711767	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	9080133	125711767	20652255	167	158966											
ZC3H3	23144	broad.mit.edu	37	chr8	144557623	144557623	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctggccggaggtcttggaGagcttgttggcagatacttt	16	7	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144557623	A	A	144557623	2	1	201	1	0	0	0	0	0	0	0	1	17695	929	33	4		4	ZC3H3	8	144557623	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	18845856	144557623	1806399	168	158967											
PLEC	5339	broad.mit.edu	37	chr8	144991017	144991017	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaagcgctcaccggtgctGgggtcgatgatgcccccggt	17	12	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144991017	A	A	144991017	2	1	201	1	0	0	0	0	0	0	0	1	12147	1335	47	4		4	PLEC	8	144991017	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	433394	144991017	1373005	169	158968											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18622297	18622297	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggaagataactgtggggtCtgcaacggagatgggtccac	15	7	1	2	rs143328816		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18622297	A	A	18622297	2	1	201	1	0	0	0	0	0	0	0	1	274	900	32	3		3	ADAMTSL1	9	18622297	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08		18622297	122591134	170	158969											
NFX1	4799	broad.mit.edu	37	chr9	33311200	33311201	+	Intron	INS	-	T	T													gttaaaattacaccctaaagINSaagacctcagttttcacatg							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33311201	T	T	33311200	6	5	201	0	1	1	1	0	0	0	0	0	10482	957	33	0		0	NFX1	9	33311200	Intron	INS	-	TCGA-67-6217-01A-11D-1753-08	14688903	33311200	107902231	171	158970											
DCAF12	25853	broad.mit.edu	37	chr9	34125283	34125285	+	Intron	DEL	AAC	-	-													gatcccagccaaactgtggaAacaacattagaaatcagggc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34125285	-	-	34125283	6	5	201	0	1	1	0	1	0	0	0	0	4296	29	1	0		0	DCAF12	9	34125283	Intron	DEL	AAC	TCGA-67-6217-01A-11D-1753-08	814083	34125283	107088148	172	158971											
NPR2	4882	broad.mit.edu	37	chr9	35806254	35806254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggcattatggggcaggGgcttcccagggatagaagac	17	7	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35806254	T	T	35806254	1	4	201	0	1	0	0	0	0	0	0	0	10690	1247	43	2		2	NPR2	9	35806254	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1680971	35806254	105407177	173	158972											
ZNF658	26149	broad.mit.edu	37	chr9	40784458	40784458	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatattctcgagagagcccCatggtaagctatgctcaccc	8	12	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40784458	T	T	40784458	1	4	201	0	1	0	0	0	0	0	0	0	18196	609	21	4		4	ZNF658	9	40784458	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	4978204	40784458	100428973	174	158973											
ANKRD20A3	441425	broad.mit.edu	37	chr9	42368331	42368331	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggctgggtcggccggggtCggggagggggttggtgaaaa	25	5	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42368331	A	A	42368331	1	1	201	0	1	0	0	0	0	0	0	0	649	899	31	3		3	ANKRD20A3	9	42368331	5'UTR	SNP	C	TCGA-67-6217-01A-11D-1753-08	1583873	42368331	98845100	175	158974											
GDA	9615	broad.mit.edu	37	chr9	74862355	74862355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcctctatctaggtaggTagatgcatgtctctatgcta	9	8	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74862355	C	C	74862355	1	2	201	0	1	0	0	0	0	0	0	0	6369	1653	57	5		5	GDA	9	74862355	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	32494024	74862355	66351076	176	158975											
ALDH1A1	216	broad.mit.edu	37	chr9	75532050	75532050	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacattcacattaaagataTattttataaaaattatatat	2	3	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75532050	C	C	75532050	1	2	201	0	1	0	0	0	0	0	0	0	490	1421	49	5		5	ALDH1A1	9	75532050	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	669695	75532050	65681381	177	158976											
FLJ46321	389763	broad.mit.edu	37	chr9	84608465	84608465	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcctccacatcccttagaaGaggtactacagattttcaaa	7	11	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84608465	T	T	84608465	3	4	201	1	0	0	0	0	1	0	0	0	5990	942	33	3	3094	3	FLJ46321	9	84608465	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	9076415	84608465	56604966	178	158977											
C9orf79	286234	broad.mit.edu	37	chr9	90502272	90502272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactggacacaagggcagggGgtgttctcagcccccaacat	13	12	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90502272	T	T	90502272	3	4	201	1	0	0	0	0	1	0	0	0	2523	1232	43	2	2884	2	C9orf79	9	90502272	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	5893807	90502272	50711159	179	158978											
PTPDC1	138639	broad.mit.edu	37	chr9	96859891	96859891	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattatccacctagtttgcaAattgctgctggacttagcgg	9	9	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96859891	G	G	96859891	3	3	201	1	0	0	0	0	1	0	0	0	12879	14	1	5	1145	5	PTPDC1	9	96859891	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	6357619	96859891	44353540	180	158979											
ZNF169	169841	broad.mit.edu	37	chr9	97054749	97054749	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagccatctggtctccctgGgtaaggctggcctgtttaag	12	11	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97054749	T	T	97054749	4	4	201	1	0	0	0	0	0	1	0	0	17868	1246	43	2	166	2	ZNF169	9	97054749	Nonsense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	194858	97054749	44158682	181	158980											
ZNF462	58499	broad.mit.edu	37	chr9	109746587	109746587	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatgagagcctccagcaacAtatagaaaagcacaatgaac	8	9	0	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109746587	T	T	109746587	3	4	201	1	0	0	0	0	1	0	0	0	18053	217	8	5	6987	5	ZNF462	9	109746587	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	12691838	109746587	31466844	182	158981											
COL5A1	1289	broad.mit.edu	37	chr9	137704300	137704300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcctgttctcagggtttGccaggacctccaggcgagaa	12	11	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137704300	T	T	137704300	3	4	201	1	0	0	0	0	1	0	0	0	3728	1310	46	3	3882	3	COL5A1	9	137704300	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	27957713	137704300	3509131	183	158982											
SOHLH1	402381	broad.mit.edu	37	chr9	138590880	138590880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacgttccgccgaaggcagGagctgggaccctcggccacc	13	16	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138590880	T	T	138590880	3	4	201	1	0	0	0	0	1	0	0	0	15037	1174	41	3	1074	3	SOHLH1	9	138590880	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	886580	138590880	2622551	184	158983											
SFMBT2	57713	broad.mit.edu	37	chr10	7423846	7423846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcatattggaagctgaCaaagtgctctccatgcctga	9	10	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7423846	A	A	7423846	3	1	201	1	0	0	0	0	1	0	0	0	14271	477	17	3	2749	3	SFMBT2	10	7423846	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08		7423846	128110901	185	158984											
UCMA	221044	broad.mit.edu	37	chr10	13275912	13275912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccagggcctggcagggGgcccgtggtttctcacgtac	15	14	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13275912	T	T	13275912	1	4	201	0	1	0	0	0	0	0	0	0	17052	1247	43	2		2	UCMA	10	13275912	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	5852066	13275912	122258835	186	158985											
ITGA8	8516	broad.mit.edu	37	chr10	15646211	15646211	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttgcaggcattaccttgTtgttgcgttcgattccaaca	8	9	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15646211	C	C	15646211	3	2	201	1	0	0	0	0	1	0	0	0	7952	1725	60	5	1121	5	ITGA8	10	15646211	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	2370299	15646211	119888536	187	158986											
CUBN	8029	broad.mit.edu	37	chr10	16943493	16943493	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaaccctctcaataaaacaGaagtaaaaaaaagaaccgat	5	8	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16943493	A	A	16943493	1	1	201	0	1	0	0	0	0	0	0	0	4084	957	33	4		4	CUBN	10	16943493	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1297282	16943493	118591254	188	158987											
MYO3A	53904	broad.mit.edu	37	chr10	26432329	26432329	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaattttaggtaattactatGaagctatatattattcacag	5	4	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26432329	A	A	26432329	1	1	201	0	1	0	0	0	0	0	0	0	10170	1305	45	4		4	MYO3A	10	26432329	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	9488836	26432329	109102418	189	158988											
C10orf68	79741	broad.mit.edu	37	chr10	33137562	33137562	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaagatatgtccgtacaaCgtcaagaaggtatctttact	7	8	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33137562	T	T	33137562	3	4	201	1	0	0	0	0	1	0	0	0	1624	536	19	4	1606	4	C10orf68	10	33137562	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	6705233	33137562	102397185	190	158989											
MSMB	4477	broad.mit.edu	37	chr10	51562320	51562320	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaactgccaaagaatcttcAagaaggaggactgcaagtat	9	8	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51562320	T	T	51562320	4	4	201	1	0	0	0	0	0	1	0	0	9977	131	5	5	279	5	MSMB	10	51562320	Nonsense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	18424758	51562320	83972427	191	158990											
PBLD	64081	broad.mit.edu	37	chr10	70048812	70048812	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaactcctcagggacatgCcctgggccaagtccttgatc	9	13	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70048812	T	T	70048812	1	4	201	0	1	0	0	0	0	0	0	0	11583	754	26	4		4	PBLD	10	70048812	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	18486492	70048812	65485935	192	158991											
HKDC1	80201	broad.mit.edu	37	chr10	71010271	71010272	+	Intron	DEL	CT	-	-													tccgcctggtgtgaatgccgCtctctctctctctgcagctc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71010272	-	-	71010271	6	5	201	0	1	1	0	1	0	0	0	0	7260	812	28	0		0	HKDC1	10	71010271	Intron	DEL	CT	TCGA-67-6217-01A-11D-1753-08	961459	71010271	64524476	193	158992											
KIF20B	9585	broad.mit.edu	37	chr10	91469165	91469165	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcctcaatgcatccttggtCggttaagtgaaaaaagctca	9	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91469165	T	T	91469165	3	4	201	1	0	0	0	0	1	0	0	0	8357	875	31	4	308	4	KIF20B	10	91469165	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	20458894	91469165	44065582	194	158993											
KIF20B	9585	broad.mit.edu	37	chr10	91469634	91469634	+	Intron	DEL	A	-	-													ttgggatggaacacactattAatattaacttgaattttcta							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	91469634	-	-	91469634	6	5	201	0	1	1	0	1	0	0	0	0	8357	377	13	0		0	KIF20B	10	91469634	Intron	DEL	A	TCGA-67-6217-01A-11D-1753-08	469	91469634	44065113	195	158994											
CPN1	1369	broad.mit.edu	37	chr10	101814132	101814132	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acatcatggttaatcccactGacagaaatgacagcattggc	8	10	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101814132	T	T	101814132	2	4	201	1	0	0	0	0	0	0	0	1	3841	1277	45	3		3	CPN1	10	101814132	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	10344498	101814132	33720615	196	158995											
CCDC147	159686	broad.mit.edu	37	chr10	106125670	106125670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagattcaggcagacatGgacagcaggcagacagaaat	12	8	1	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106125670	T	T	106125670	3	4	201	1	0	0	0	0	1	0	0	0	2807	1348	47	2	714	2	CCDC147	10	106125670	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	4311538	106125670	29409077	197	158996											
SORCS1	114815	broad.mit.edu	37	chr10	108412104	108412104	+	Intron	SNP	C	A	A													tattaagaaaaatcactggcCctagaaagtaggggggagat							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108412104	A	A	108412104	1	1	201	0	1	0	0	0	0	0	0	0	15044	638	22	2		2	SORCS1	10	108412104	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	2286434	108412104	27122643	198	158997	674	2									
SORCS1	114815	broad.mit.edu	37	chr10	108412106	108412106	+	Intron	SNP	T	A	A													ttaagaaaaatcactggcccTagaaagtaggggggagatag							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108412106	A	A	108412106	1	1	201	0	1	0	0	0	0	0	0	0	15044	1537	53	5		5	SORCS1	10	108412106	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	2	108412106	27122641	199	158998	674	2									
NRAP	4892	broad.mit.edu	37	chr10	115380307	115380307	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattattttaattttatacaGagacgccgcacgcctaatgc	6	9	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115380307	A	A	115380307	1	1	201	0	1	0	0	0	0	0	0	0	10733	957	33	4		4	NRAP	10	115380307	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	6968201	115380307	20154440	200	158999											
ATRNL1	26033	broad.mit.edu	37	chr10	117075340	117075340	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaatttagctttaggAaaaaagcagaatgaaaatga	8	2	0	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117075340	T	T	117075340	1	4	201	0	1	0	0	0	0	0	0	0	1211	261	9	5		5	ATRNL1	10	117075340	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	1695033	117075340	18459407	201	159000											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118383478	118383478	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagagtctgctacggacaActtggctgcttttctgatga	10	8	2	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118383478	T	T	118383478	3	4	201	1	0	0	0	0	1	0	0	0	12246	43	2	5	84	5	PNLIPRP2	10	118383478	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	1308138	118383478	17151269	202	159001											
OR51A7	119687	broad.mit.edu	37	chr11	4929304	4929304	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggcagagaggcttaaGgccctaaatacctgtgtctc	10	10	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4929304	T	T	4929304	3	4	201	1	0	0	0	0	1	0	0	0	11182	991	35	2	707	2	OR51A7	11	4929304	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08		4929304	130077212	203	159002											
OR52H1	390067	broad.mit.edu	37	chr11	5565818	5565818	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacccttagaaaacaaaagTataaccttatctctgatctg	5	9	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5565818	A	A	5565818	2	1	201	1	0	0	0	0	0	0	0	1	11213	1628	57	5		5	OR52H1	11	5565818	Silent	SNP	T	TCGA-67-6217-01A-11D-1753-08	636514	5565818	129440698	204	159003											
SCUBE2	57758	broad.mit.edu	37	chr11	9052542	9052542	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctccccactctccaaatgaGaccaacttcagtccaacctg	5	17	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9052542	T	T	9052542	1	4	201	0	1	0	0	0	0	0	0	0	14058	957	33	3		3	SCUBE2	11	9052542	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	3486724	9052542	125953974	205	159004											
NELL1	4745	broad.mit.edu	37	chr11	21594952	21594952	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcacaacctgtaaatgCaaggtaattggatgttctgc	9	10	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21594952	A	A	21594952	4	1	201	1	0	0	0	0	0	1	0	0	10428	718	25	3	2453	3	NELL1	11	21594952	Nonsense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	12542410	21594952	113411564	206	159005											
MUC15	143662	broad.mit.edu	37	chr11	26582625	26582625	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttagttctatacagaagtaCgaagtggaggtatgtcatcc	11	6	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26582625	T	T	26582625	3	4	201	1	0	0	0	0	1	0	0	0	10066	536	19	4	16	4	MUC15	11	26582625	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	4987673	26582625	108423891	207	159006											
CD44	960	broad.mit.edu	37	chr11	35208349	35208349	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcctcatgtttttaaagGgttctcatcctttttttcct	4	9	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35208349	T	T	35208349	1	4	201	0	1	0	0	0	0	0	0	0	3047	1247	43	2		2	CD44	11	35208349	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	8625724	35208349	99798167	208	159007											
OR5D13	390142	broad.mit.edu	37	chr11	55541680	55541680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcactatcttccatggaaCtatccttttcctttactgtg	4	12	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55541680	A	A	55541680	3	1	201	1	0	0	0	0	1	0	0	0	11248	565	20	3	769	3	OR5D13	11	55541680	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	20333331	55541680	79464836	209	159008											
OR5T3	390154	broad.mit.edu	37	chr11	56020310	56020310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtcttttgtgatatgcCtcctctccttgctatttctt	6	11	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020310	A	A	56020310	3	1	201	1	0	0	0	0	1	0	0	0	11277	681	24	2	637	2	OR5T3	11	56020310	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	478630	56020310	78986206	210	159009											
OR8K3	219473	broad.mit.edu	37	chr11	56086612	56086612	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaagtggcttccatattttAcaccctggttatccccatgt	6	11	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56086612	T	T	56086612	3	4	201	1	0	0	0	0	1	0	0	0	11338	391	14	5	832	5	OR8K3	11	56086612	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	66302	56086612	78919904	211	159010											
OR5M8	219484	broad.mit.edu	37	chr11	56258623	56258623	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcatctttggagtcacaTtggaagagaagcacagatcc	10	10	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56258623	C	C	56258623	3	2	201	1	0	0	0	0	1	0	0	0	11270	1493	52	5	715	5	OR5M8	11	56258623	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	172011	56258623	78747893	212	159011											
CTNND1	1500	broad.mit.edu	37	chr11	57583707	57583707	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagatttgctcaactttttTggggggggtctccttaatcc	10	10	2	1	rs59803542		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57583707	G	G	57583707	1	3	201	0	1	0	0	0	0	0	0	0	4053	1827	63	5		5	CTNND1	11	57583707	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	1325084	57583707	77422809	213	159012											
OR5A1	219982	broad.mit.edu	37	chr11	59211538	59211538	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacagtttgaggaacaaagaGatcaaggatgccctgtggaa	12	6	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59211538	T	T	59211538	3	4	201	1	0	0	0	0	1	0	0	0	11233	933	33	3	899	3	OR5A1	11	59211538	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	1627831	59211538	75794978	214	159013											
CYBASC3	220002	broad.mit.edu	37	chr11	61123828	61123828	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccacccttctgagatgcCccccatcttaaccccttcct	4	19	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61123828	A	A	61123828	1	1	201	0	1	0	0	0	0	0	0	0	4165	638	22	2		2	CYBASC3	11	61123828	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1912290	61123828	73882688	215	159014											
SLC3A2	6520	broad.mit.edu	37	chr11	62655775	62655775	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggggagcccctcacacGcttctgctatgtttttatca	8	14	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62655775	A	A	62655775	1	1	201	0	1	0	0	0	0	0	0	0	14741	1102	38	4		4	SLC3A2	11	62655775	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1531947	62655775	72350741	216	159015											
SF1	7536	broad.mit.edu	37	chr11	64535328	64535328	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgagagactacgtgagagCatttcctgccaacgtccctg	10	12	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64535328	G	G	64535328	1	3	201	0	1	0	0	0	0	0	0	0	14258	725	25	4		4	SF1	11	64535328	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1879553	64535328	70471188	217	159016											
MEN1	4221	broad.mit.edu	37	chr11	64572475	64572475	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgtcaccacctgtaGtgcccagacctctgtgcagc	11	15	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64572475	A	A	64572475	1	1	201	0	1	0	0	0	0	0	0	0	9565	1044	36	4		4	MEN1	11	64572475	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	37147	64572475	70434041	218	159017											
KCTD14	65987	broad.mit.edu	37	chr11	77728273	77728273	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagggtacccagggtggtgGtgtggaactcacccccgacg	15	12	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77728273	C	C	77728273	3	2	201	1	0	0	0	0	1	0	0	0	8171	1261	44	4	637	4	KCTD14	11	77728273	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	13155798	77728273	57278243	219	159018											
GRM5	2915	broad.mit.edu	37	chr11	88780748	88780748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacagccgaatgccagcagGagtcccttatctcacagccc	8	17	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88780748	T	T	88780748	3	4	201	1	0	0	0	0	1	0	0	0	6866	1174	41	3	3381	3	GRM5	11	88780748	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	11052475	88780748	46225768	220	159019											
AMOTL1	154810	broad.mit.edu	37	chr11	94532826	94532826	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggtctaccagtcagcacGccaagaaccgcagggtcaag	11	12	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94532826	A	A	94532826	3	1	201	1	0	0	0	0	1	0	0	0	583	1087	38	4	480	4	AMOTL1	11	94532826	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	5752078	94532826	40473690	221	159020											
ANGPTL5	253935	broad.mit.edu	37	chr11	101762375	101762375	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttaaaggaaatttctatTattttaattaatcattacca	2	4	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101762375	G	G	101762375	1	3	201	0	1	0	0	0	0	0	0	0	617	1769	61	5		5	ANGPTL5	11	101762375	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	7229549	101762375	33244141	222	159021											
MMP8	4317	broad.mit.edu	37	chr11	102595604	102595604	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgatcttctcttcaaactCtacccctcctggctttcttt	3	15	5	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102595604	G	G	102595604	1	3	201	0	1	0	0	0	0	0	0	0	9762	928	32	4		4	MMP8	11	102595604	5'UTR	SNP	C	TCGA-67-6217-01A-11D-1753-08	833229	102595604	32410912	223	159022											
LAYN	143903	broad.mit.edu	37	chr11	111425981	111425981	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccagaagaaacacaggaAgaagatgccaaaaaaacatt	7	8	0	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111425981	C	C	111425981	3	2	201	1	0	0	0	0	1	0	0	0	8721	69	3	5	642	5	LAYN	11	111425981	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	8830377	111425981	23580535	224	159023											
CEP164	22897	broad.mit.edu	37	chr11	117279765	117279765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtgggggagatgcgggGtgaggaccatggtatccatg	20	5	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117279765	T	T	117279765	1	4	201	0	1	0	0	0	0	0	0	0	3279	1276	44	3		3	CEP164	11	117279765	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	5853784	117279765	17726751	225	159024											
HYOU1	10525	broad.mit.edu	37	chr11	118922237	118922237	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcggttaaaggtgatgactTtgcgttgagggtagggcccc	16	7	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118922237	C	C	118922237	3	2	201	1	0	0	0	0	1	0	0	0	7540	1841	64	5	1616	5	HYOU1	11	118922237	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	1642472	118922237	16084279	226	159025											
GRIK4	2900	broad.mit.edu	37	chr11	120690598	120690598	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacttcttcaactgcacCaccgcctgcctcatctgtgc	6	17	4	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120690598	T	T	120690598	2	4	201	1	0	0	0	0	0	0	0	1	6842	581	21	4		4	GRIK4	11	120690598	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	1768361	120690598	14315918	227	159026											
NCAPD3	23310	broad.mit.edu	37	chr11	134023027	134023027	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcaaaaggaacactgctAaacttacggtttatcaggca	7	10	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134023027	G	G	134023027	1	3	201	0	1	0	0	0	0	0	0	0	10301	377	13	5		5	NCAPD3	11	134023027	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	13332429	134023027	983489	228	159027											
SLC6A13	6540	broad.mit.edu	37	chr12	330154	330154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagtctgagcagtgagGtcctgggggtggcgggagcc	20	8	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	330154	T	T	330154	3	4	201	1	0	0	0	0	1	0	0	0	14790	1261	44	3	43	3	SLC6A13	12	330154	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08		330154	133521741	229	159028											
C12orf5	57103	broad.mit.edu	37	chr12	4459026	4459026	+	Missense_Mutation	SNP	T	G	G													agaagcaaattttgcaaagaTatgacggtaaagtatgactc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4459026	G	G	4459026	3	3	201	1	0	0	0	0	1	0	0	0	1707	1403	49	5	248	5	C12orf5	12	4459026	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	4128872	4459026	129392869	230	159029	675	2									
C12orf5	57103	broad.mit.edu	37	chr12	4459029	4459029	+	Missense_Mutation	SNP	G	T	T													agcaaattttgcaaagatatGacggtaaagtatgactcaag							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4459029	T	T	4459029	3	4	201	1	0	0	0	0	1	0	0	0	1707	1290	45	3	251	3	C12orf5	12	4459029	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	3	4459029	129392866	231	159030	675	2									
CLEC4E	26253	broad.mit.edu	37	chr12	8687174	8687174	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatttctcgtgtggggcgGtgggtgtggccatgttcttg	16	7	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8687174	A	A	8687174	1	1	201	0	1	0	0	0	0	0	0	0	3547	1276	44	4		4	CLEC4E	12	8687174	3'UTR	SNP	G	TCGA-67-6217-01A-11D-1753-08	4228145	8687174	125164721	232	159031											
PTPRO	5800	broad.mit.edu	37	chr12	15679066	15679066	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaaacccttgattttgatGatcttgcaggtaacacgcaa	7	8	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15679066	T	T	15679066	1	4	201	0	1	0	0	0	0	0	0	0	12917	1305	45	3		3	PTPRO	12	15679066	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	6991892	15679066	118172829	233	159032											
PDE3A	5139	broad.mit.edu	37	chr12	20769153	20769153	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgggtaatgaagtcaagtCtctttcctagcgcctgagaa	10	9	3	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20769153	T	T	20769153	1	4	201	0	1	0	0	0	0	0	0	0	11731	928	32	4		4	PDE3A	12	20769153	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	5090087	20769153	113082742	234	159033											
ST8SIA1	6489	broad.mit.edu	37	chr12	22408181	22408181	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggggaaaaggagagaaGgcagaggccgcgctgtgggt	22	5	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22408181	T	T	22408181	1	4	201	0	1	0	0	0	0	0	0	0	15349	1015	35	2		2	ST8SIA1	12	22408181	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1639028	22408181	111443714	235	159034											
ALG10B	144245	broad.mit.edu	37	chr12	38714267	38714267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagacttccacctattaaagGaccatttgcagaattcagaa	6	10	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38714267	T	T	38714267	3	4	201	1	0	0	0	0	1	0	0	0	512	1174	41	3	684	3	ALG10B	12	38714267	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	16306086	38714267	95137628	236	159035											
ARID2	196528	broad.mit.edu	37	chr12	46243560	46243560	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgctccttcacctgcagGtgttaatttttattgtattt	6	9	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46243560	T	T	46243560	5	4	201	1	0	0	0	0	0	0	1	0	917	1275	44	3	1967	3	ARID2	12	46243560	Splice_Site	SNP	G	TCGA-67-6217-01A-11D-1753-08	7529293	46243560	87608335	237	159036											
C12orf54	121273	broad.mit.edu	37	chr12	48879932	48879932	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccacattctgtgctcctcAtcaggtttatatcattcttt	5	12	5	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48879932	T	T	48879932	1	4	201	0	1	0	0	0	0	0	0	0	1712	232	8	5		5	C12orf54	12	48879932	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	2636372	48879932	84971963	238	159037											
GALNT6	11226	broad.mit.edu	37	chr12	51771046	51771046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggggtggtgtgtaggacGctgtacactgttcgcagcag	17	8	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51771046	T	T	51771046	3	4	201	1	0	0	0	0	1	0	0	0	6279	1078	38	3	1307	3	GALNT6	12	51771046	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	2891114	51771046	82080849	239	159038											
KRT75	9119	broad.mit.edu	37	chr12	52825359	52825359	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagtggatgaagttgatctCctcgggcagagatttgacct	13	7	1	5			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52825359	T	T	52825359	3	4	201	1	0	0	0	0	1	0	0	0	8559	864	30	4	841	4	KRT75	12	52825359	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1054313	52825359	81026536	240	159039											
KRT1	3848	broad.mit.edu	37	chr12	53072009	53072009	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgatttcatcctcataccTgcaggaaagcagaaacaatt	7	9	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53072009	C	C	53072009	5	2	201	1	0	0	0	0	0	0	1	0	8518	1594	55	5	1157	5	KRT1	12	53072009	Splice_Site	SNP	T	TCGA-67-6217-01A-11D-1753-08	246650	53072009	80779886	241	159040											
LRIG3	121227	broad.mit.edu	37	chr12	59272706	59272706	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcttcacatccacgataaaGaacacgtcatcctcgggcat	6	13	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59272706	T	T	59272706	3	4	201	1	0	0	0	0	1	0	0	0	9033	933	33	3	1400	3	LRIG3	12	59272706	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	6200697	59272706	74579189	242	159041											
C12orf56	115749	broad.mit.edu	37	chr12	64732358	64732359	+	Intron	DNP	CA	AC	AC													gcttgattcatcaaattggaCatctgaattttcttctgctg							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	64732359	AC	AC	64732358	1	1	201	0	1	0	0	0	0	0	0	0	1713	493	17	3		3	C12orf56	12	64732358	Intron	DNP	CA	TCGA-67-6217-01A-11D-1753-08	5459652	64732358	69119537	243	159042											
NAV3	89795	broad.mit.edu	37	chr12	78582552	78582552	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacatcatcactgtgaaccTcaaaggtaaaagcaataatg	6	8	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78582552	A	A	78582552	3	1	201	1	0	0	0	0	1	0	0	0	10279	1551	54	5	6110	5	NAV3	12	78582552	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	13850194	78582552	55269343	244	159043											
LUM	4060	broad.mit.edu	37	chr12	91502379	91502379	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacagactctgtcaggttGttgtggtttatatgcagctt	10	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91502379	C	C	91502379	3	2	201	1	0	0	0	0	1	0	0	0	9172	1368	48	4	646	4	LUM	12	91502379	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	12919827	91502379	42349516	245	159044											
TBX5	6910	broad.mit.edu	37	chr12	114837318	114837318	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgccaccccagtgcctacCatttattatctgcgaatttg	6	14	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114837318	T	T	114837318	4	4	201	1	0	0	0	0	0	1	0	0	15783	608	21	4	1285	4	TBX5	12	114837318	Nonsense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	23334939	114837318	19014577	246	159045											
SUDS3	64426	broad.mit.edu	37	chr12	118838652	118838652	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agggtacacatggccgttgtCctacagaaaatagtaacatt	9	8	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118838652	T	T	118838652	1	4	201	0	1	0	0	0	0	0	0	0	15485	870	30	4		4	SUDS3	12	118838652	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	4001334	118838652	15013243	247	159046											
TPTE2	93492	broad.mit.edu	37	chr13	20038678	20038678	+	Intron	SNP	C	T	T													gttctgaaagtcaaaatcatCactattacaaacattattat							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20038678	T	T	20038678	1	4	201	0	1	0	0	0	0	0	0	0	16555	841	29	4		4	TPTE2	13	20038678	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08		20038678	95131200	248	159047	676	2									
TPTE2	93492	broad.mit.edu	37	chr13	20038685	20038685	+	Intron	SNP	A	G	G													aagtcaaaatcatcactattAcaaacattattatagatttc							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20038685	G	G	20038685	1	3	201	0	1	0	0	0	0	0	0	0	16555	406	14	5		5	TPTE2	13	20038685	Intron	SNP	A	TCGA-67-6217-01A-11D-1753-08	7	20038685	95131193	249	159048	676	2									
SACS	26278	broad.mit.edu	37	chr13	23904263	23904263	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaagatctaccttttttttCgttaaatatcttcacacttt	2	9	4	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23904263	A	A	23904263	1	1	201	0	1	0	0	0	0	0	0	0	13915	899	31	3		3	SACS	13	23904263	3'UTR	SNP	C	TCGA-67-6217-01A-11D-1753-08	3865578	23904263	91265615	250	159049											
HSPH1	10808	broad.mit.edu	37	chr13	31719733	31719733	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttctggtggtctctgattCagacactccatgtcagcttc	8	11	4	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31719733	A	A	31719733	2	1	201	1	0	0	0	0	0	0	0	1	7501	813	29	3		3	HSPH1	13	31719733	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	7815470	31719733	83450145	251	159050											
KL	9365	broad.mit.edu	37	chr13	33634951	33634951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgactttgctgccatcCagccccagatcgctttactc	8	14	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33634951	A	A	33634951	3	1	201	1	0	0	0	0	1	0	0	0	8402	595	21	2	1749	2	KL	13	33634951	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1915218	33634951	81534927	252	159051											
TRPC4	7223	broad.mit.edu	37	chr13	38237641	38237641	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagaagtacaattgatttaGgccatttgcaaatgctagca	8	6	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38237641	T	T	38237641	3	4	201	1	0	0	0	0	1	0	0	0	16705	991	35	2	1372	2	TRPC4	13	38237641	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	4602690	38237641	76932237	253	159052											
STOML3	161003	broad.mit.edu	37	chr13	39546705	39546705	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcaactttgacaaacacatCtatgcatggcaggaccagga	9	10	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39546705	A	A	39546705	3	1	201	1	0	0	0	0	1	0	0	0	15433	913	32	3	635	3	STOML3	13	39546705	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1309064	39546705	75623173	254	159053											
PCDH9	5101	broad.mit.edu	37	chr13	67801795	67801796	+	Missense_Mutation	DNP	GC	TG	TG													gggagcattctctggaatatGcacctccacttgaccctctt							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	67801796	TG	TG	67801795	3	4	201	1	0	0	0	0	1	0	0	0	11612	1319	46	3	2951	3	PCDH9	13	67801795	Missense_Mutation	DNP	GC	TCGA-67-6217-01A-11D-1753-08	28255090	67801795	47368083	255	159054											
SLITRK6	84189	broad.mit.edu	37	chr13	86369625	86369626	+	Missense_Mutation	DNP	GG	TT	TT													aatgtattagaagtcctgatGgggataggactttgcagtta							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	86369626	TT	TT	86369625	3	4	201	1	0	0	0	0	1	0	0	0	14861	1348	47	2	1510	2	SLITRK6	13	86369625	Missense_Mutation	DNP	GG	TCGA-67-6217-01A-11D-1753-08	18567830	86369625	28800253	256	159055											
OR11H12	440153	broad.mit.edu	37	chr14	19377684	19377684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaatgaatttatactccaaGgtttcacttgtgagtggaca	8	6	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19377684	T	T	19377684	3	4	201	1	0	0	0	0	1	0	0	0	11021	1000	35	2	93	2	OR11H12	14	19377684	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08		19377684	87971856	257	159056											
PRKD1	5587	broad.mit.edu	37	chr14	30100003	30100003	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggaatgacgggcataagGgcatgctggatggctatctc	15	7	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30100003	A	A	30100003	2	1	201	1	0	0	0	0	0	0	0	1	12624	1219	43	4		4	PRKD1	14	30100003	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	10722319	30100003	77249537	258	159057											
ARID4A	5926	broad.mit.edu	37	chr14	58811362	58811362	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaataaaagaagacatGtatcttttccagttcactgt	5	7	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58811362	T	T	58811362	1	4	201	0	1	0	0	0	0	0	0	0	921	1392	48	3		3	ARID4A	14	58811362	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	28711359	58811362	48538178	259	159058											
SYT16	83851	broad.mit.edu	37	chr14	62536262	62536262	+	Intron	DEL	A	-	-													tctgttttcctggagagtctAtctctgtattcgagcatata							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62536262	-	-	62536262	6	5	201	0	1	1	0	1	0	0	0	0	15591	464	16	0		0	SYT16	14	62536262	Intron	DEL	A	TCGA-67-6217-01A-11D-1753-08	3724900	62536262	44813278	260	159059											
LTBP2	4053	broad.mit.edu	37	chr14	74989609	74989610	+	Frame_Shift_Ins	INS	-	TT	TT													gttggtggctccagcagcgcINSatctgtcaatgcctgtggga							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	74989610	TT	TT	74989609	7	5	201	1	0	1	1	0	0	0	0	0	9161	710	25	0	3006	0	LTBP2	14	74989609	Frame_Shift_Ins	INS	-	TCGA-67-6217-01A-11D-1753-08	12453347	74989609	32359931	261	159060											
ATG2B	55102	broad.mit.edu	37	chr14	96800187	96800187	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttcctatctttattagCtaaccctattttgctagaat	3	8	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96800187	A	A	96800187	3	1	201	1	0	0	0	0	1	0	0	0	1098	797	28	3	5331	3	ATG2B	14	96800187	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	21810578	96800187	10549353	262	159061											
AHNAK2	113146	broad.mit.edu	37	chr14	105412058	105412058	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttgatgtctatctgggGgcccttgcgatctactttgg	12	11	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105412058	T	T	105412058	3	4	201	1	0	0	0	0	1	0	0	0	415	1232	43	2	7661	2	AHNAK2	14	105412058	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	8611871	105412058	1937482	263	159062											
POTEB	339010	broad.mit.edu	37	chr15	21071173	21071173	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatcatccccccatgtccCgcctcctcccatcccaggcc	4	25	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21071173	A	A	21071173	1	1	201	0	1	0	0	0	0	0	0	0	12357	667	23	1		1	POTEB	15	21071173	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08		21071173	81460219	264	159063											
RYR3	6263	broad.mit.edu	37	chr15	34150155	34150155	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccagcccacccactgcGgggccaccccgccccaccac	11	23	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34150155	A	A	34150155	1	1	201	0	1	0	0	0	0	0	0	0	13881	1131	39	4		4	RYR3	15	34150155	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	13078982	34150155	68381237	265	159064											
DUOX1	53905	broad.mit.edu	37	chr15	45444641	45444641	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctgcgagaaaccttcctCaaccgctacgtgcccttcga	7	16	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45444641	T	T	45444641	2	4	201	1	0	0	0	0	0	0	0	1	4840	813	29	4		4	DUOX1	15	45444641	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	11294486	45444641	57086751	266	159065											
GATM	2628	broad.mit.edu	37	chr15	45661562	45661562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttttatacttcaatgacCagtcaatggggtcaggcctc	10	9	3	1	rs80338737		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45661562	A	A	45661562	3	1	201	1	0	0	0	0	1	0	0	0	6325	595	21	2	853	2	GATM	15	45661562	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	216921	45661562	56869830	267	159066											
SEMA6D	80031	broad.mit.edu	37	chr15	48056008	48056008	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttccattcctttccatGctcataaccccattgctttg	4	13	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48056008	C	C	48056008	1	2	201	0	1	0	0	0	0	0	0	0	14155	1334	46	4		4	SEMA6D	15	48056008	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	2394446	48056008	54475384	268	159067											
ATP8B4	79895	broad.mit.edu	37	chr15	50271825	50271825	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcttacctcacatataaGgaaatgggtacaactgtatt	6	8	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50271825	A	A	50271825	2	1	201	1	0	0	0	0	0	0	0	1	1201	987	35	4		4	ATP8B4	15	50271825	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08	2215817	50271825	52259567	269	159068											
VPS13C	54832	broad.mit.edu	37	chr15	62226466	62226466	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaaagagattcaaagtgAaagtcaaattggagactgac	11	4	2	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62226466	C	C	62226466	3	2	201	1	0	0	0	0	1	0	0	0	17318	243	9	5	5617	5	VPS13C	15	62226466	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	11954641	62226466	40304926	270	159069											
CSNK1G1	53944	broad.mit.edu	37	chr15	64508785	64508785	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatggctatcattaacacCgtcttcaaagtaaatgttcg	8	8	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64508785	A	A	64508785	2	1	201	1	0	0	0	0	0	0	0	1	3988	639	23	1		1	CSNK1G1	15	64508785	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	2282319	64508785	38022607	271	159070											
ALPK3	57538	broad.mit.edu	37	chr15	85411371	85411371	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcaaggaaagctgcttccCtgccctgctggaccggttcg	11	15	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85411371	T	T	85411371	3	4	201	1	0	0	0	0	1	0	0	0	546	681	24	4	5462	4	ALPK3	15	85411371	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	20902586	85411371	17120021	272	159071											
TPSG1	25823	broad.mit.edu	37	chr16	1272752	1272752	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acgggcaggatccggctggaGagggtcacggggacactgag	19	9	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1272752	T	T	1272752	2	4	201	1	0	0	0	0	0	0	0	1	16550	929	33	3		3	TPSG1	16	1272752	Silent	SNP	G	TCGA-67-6217-01A-11D-1753-08		1272752	89082001	273	159072											
TMEM204	79652	broad.mit.edu	37	chr16	1604799	1604799	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaggttttgtcctggtcatCgggctcgtgactttctacag	12	10	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1604799	A	A	1604799	2	1	201	1	0	0	0	0	0	0	0	1	16252	874	31	3		3	TMEM204	16	1604799	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	332047	1604799	88749954	274	159073											
ACSM2B	348158	broad.mit.edu	37	chr16	20554441	20554441	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatttcccttcccaaccCagaaaccaagctcacccgct	4	19	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20554441	A	A	20554441	1	1	201	0	1	0	0	0	0	0	0	0	184	609	21	2		2	ACSM2B	16	20554441	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	18949642	20554441	69800312	275	159074											
ITGAL	3683	broad.mit.edu	37	chr16	30522454	30522454	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccatcaacatcctcatccAggagtaagttcttcccagca	5	16	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30522454	T	T	30522454	3	4	201	1	0	0	0	0	1	0	0	0	7956	188	7	5	2877	5	ITGAL	16	30522454	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	9968013	30522454	59832299	276	159075											
CNOT1	23019	broad.mit.edu	37	chr16	58585363	58585363	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaggatgggagatacaaaGgaagacatgtcagtctttta	11	4	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58585363	A	A	58585363	1	1	201	0	1	0	0	0	0	0	0	0	3649	1015	35	4		4	CNOT1	16	58585363	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	28062909	58585363	31769390	277	159076											
LRRC36	55282	broad.mit.edu	37	chr16	67399106	67399106	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctagcttgcaaggatagtCtttcccattaataggaaggt	9	9	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67399106	T	T	67399106	1	4	201	0	1	0	0	0	0	0	0	0	9077	928	32	4		4	LRRC36	16	67399106	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	8813743	67399106	22955647	278	159077											
HYDIN	54768	broad.mit.edu	37	chr16	70955220	70955220	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttgtctcatgagaaggtCtccgaggatctgggcacctc	11	10	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70955220	A	A	70955220	1	1	201	0	1	0	0	0	0	0	0	0	7537	928	32	3		3	HYDIN	16	70955220	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	3556114	70955220	19399533	279	159078											
SLC38A8	146167	broad.mit.edu	37	chr16	84065340	84065340	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttcaccgcatcagagacGgaaagaactggaaggaagga	13	9	2	2	rs142107989	by1000genomes	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84065340	A	A	84065340	1	1	201	0	1	0	0	0	0	0	0	0	14724	1131	39	4		4	SLC38A8	16	84065340	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	13110120	84065340	6289413	280	159079											
NEURL4	84461	broad.mit.edu	37	chr17	7221815	7221815	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcccccactgccactaaccTgctcacactgcccatagagg	7	18	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7221815	C	C	7221815	3	2	201	1	0	0	0	0	1	0	0	0	10442	1594	55	5	853	5	NEURL4	17	7221815	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08		7221815	73973395	281	159080											
MYH2	4620	broad.mit.edu	37	chr17	10429087	10429087	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cacatcaagcatgaggtcctCgacctcattctgcagccgct	8	15	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10429087	G	G	10429087	3	3	201	1	0	0	0	0	1	0	0	0	10129	893	31	4	1571	4	MYH2	17	10429087	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	3207272	10429087	70766123	282	159081											
KRT222	125113	broad.mit.edu	37	chr17	38818199	38818199	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagattcaatttccacttgcAggtggtgccactggcgtcgg	13	10	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38818199	T	T	38818199	3	4	201	1	0	0	0	0	1	0	0	0	8530	188	7	5	713	5	KRT222	17	38818199	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	28389112	38818199	42377011	283	159082											
KRT13	3860	broad.mit.edu	37	chr17	39658805	39658806	+	Frame_Shift_Ins	INS	-	A	A													gctgcagctgcagggcatagINScggcactccgtctctgccac					rs148296285	byFrequency	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39658806	A	A	39658805	7	5	201	1	0	1	1	0	0	0	0	0	8521	958	34	0	323	0	KRT13	17	39658805	Frame_Shift_Ins	INS	-	TCGA-67-6217-01A-11D-1753-08	840606	39658805	41536405	284	159083											
NAGLU	4669	broad.mit.edu	37	chr17	40690295	40690298	+	Intron	DEL	TGAA	-	-													agcaatgagtgaatggttgtTgaatgaatgaatgaatgaat							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40690298	-	-	40690295	6	5	201	0	1	1	0	1	0	0	0	0	10237	1827	63	0		0	NAGLU	17	40690295	Intron	DEL	TGAA	TCGA-67-6217-01A-11D-1753-08	1031490	40690295	40504915	285	159084											
DHX8	1659	broad.mit.edu	37	chr17	41594634	41594634	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgagatgaaatgctgaccAccaacgtgccggaaatccag	10	12	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41594634	G	G	41594634	3	3	201	1	0	0	0	0	1	0	0	0	4555	159	6	5	2813	5	DHX8	17	41594634	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	904339	41594634	39600576	286	159085											
FZD2	2535	broad.mit.edu	37	chr17	42635330	42635330	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccgaactgcgcttcttcCtgtgctccatgtacgcaccc	8	18	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42635330	T	T	42635330	2	4	201	1	0	0	0	0	0	0	0	1	6190	680	24	4		4	FZD2	17	42635330	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	1040696	42635330	38559880	287	159086											
CACNA1G	8913	broad.mit.edu	37	chr17	48680604	48680604	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacctccaagaggtggcccCctccgcagggacatctccca	9	18	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48680604	T	T	48680604	1	4	201	0	1	0	0	0	0	0	0	0	2570	638	22	4		4	CACNA1G	17	48680604	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	6045274	48680604	32514606	288	159087											
BZRAP1	9256	broad.mit.edu	37	chr17	56389902	56389902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgggctggctccttccCacactgctttggcccccgct	11	17	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56389902	A	A	56389902	2	1	201	1	0	0	0	0	0	0	0	1	1587	581	21	2		2	BZRAP1	17	56389902	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	7709298	56389902	24805308	289	159088											
ARSG	22901	broad.mit.edu	37	chr17	66339822	66339822	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccggccggcttggccttcGcaatggagtcacacgcaact	11	15	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66339822	A	A	66339822	3	1	201	1	0	0	0	0	1	0	0	0	996	1087	38	4	302	4	ARSG	17	66339822	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	9949920	66339822	14855388	290	159089											
MRPS7	51081	broad.mit.edu	37	chr17	73261910	73261910	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcacacaagctgctggaggCtttccataaccagggccccg	11	14	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73261910	T	T	73261910	3	4	201	1	0	0	0	0	1	0	0	0	9942	797	28	4	653	4	MRPS7	17	73261910	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	6922088	73261910	7933300	291	159090											
CASKIN2	57513	broad.mit.edu	37	chr17	73501170	73501170	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcacctgcggccaggggtgGggggcggggacggtcactcc	20	12	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73501170	C	C	73501170	1	2	201	0	1	0	0	0	0	0	0	0	2693	1247	43	4		4	CASKIN2	17	73501170	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	239260	73501170	7694040	292	159091											
UNC13D	201294	broad.mit.edu	37	chr17	73839352	73839352	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtagagcagggcccgctaaGacacacggggtcaccttggg	15	12	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73839352	C	C	73839352	1	2	201	0	1	0	0	0	0	0	0	0	17113	957	33	4		4	UNC13D	17	73839352	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	338182	73839352	7355858	293	159092											
TMEM105	284186	broad.mit.edu	37	chr17	79287682	79287682	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggacccctggggagacgtCctcgggccctgcagcagggt	18	13	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79287682	A	A	79287682	3	1	201	1	0	0	0	0	1	0	0	0	16142	854	30	3	234	3	TMEM105	17	79287682	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	5448330	79287682	1907528	294	159093											
C17orf62	79415	broad.mit.edu	37	chr17	80404623	80404623	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctccagggacatgcccacGggaggccccgcctagcacag	13	16	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80404623	A	A	80404623	1	1	201	0	1	0	0	0	0	0	0	0	1886	1131	39	4		4	C17orf62	17	80404623	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	1116941	80404623	790587	295	159094											
OSBPL1A	114876	broad.mit.edu	37	chr18	21898723	21898723	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actctgtaccttattaccaaCaagaatgtgtttcatttcag	5	9	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21898723	G	G	21898723	3	3	201	1	0	0	0	0	1	0	0	0	11371	478	17	4	2260	4	OSBPL1A	18	21898723	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08		21898723	56178525	296	159095											
DCC	1630	broad.mit.edu	37	chr18	50451587	50451587	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgttaatttactctgcaccTtccctatgtcttgcaggtct	6	11	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50451587	A	A	50451587	1	1	201	0	1	0	0	0	0	0	0	0	4315	1624	56	5		5	DCC	18	50451587	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	28552864	50451587	27625661	297	159096											
ST8SIA3	51046	broad.mit.edu	37	chr18	55024510	55024510	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatattacaacaatctcttGactattcaggaccgtaacaa	4	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55024510	C	C	55024510	3	2	201	1	0	0	0	0	1	0	0	0	15351	1281	45	4	679	4	ST8SIA3	18	55024510	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	4572923	55024510	23052738	298	159097											
SERPINB4	6318	broad.mit.edu	37	chr18	61324050	61324050	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtagaaggaagagttgtaGatgcaagttcttaccttctg	11	6	2	3	rs75355927	by1000genomes	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61324050	T	T	61324050	1	4	201	0	1	0	0	0	0	0	0	0	14216	957	33	3		3	SERPINB4	18	61324050	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	6299540	61324050	16753198	299	159098											
ZNF516	9658	broad.mit.edu	37	chr18	74154250	74154250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctggctgaaggcctggCcacacacctcgcacgggaac	13	14	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74154250	A	A	74154250	3	1	201	1	0	0	0	0	1	0	0	0	18087	739	26	3	2751	3	ZNF516	18	74154250	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	12830200	74154250	3922998	300	159099											
C19orf36	113177	broad.mit.edu	37	chr19	2099076	2099076	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagaaggggtgctcgtaaGccaacaccagcgtgccgcgg	17	11	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2099076	A	A	2099076	1	1	201	0	1	0	0	0	0	0	0	0	1940	986	34	4		4	C19orf36	19	2099076	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08		2099076	57029907	301	159100											
AP3D1	8943	broad.mit.edu	37	chr19	2114283	2114283	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtttctgaataggcagtttCtcgctgtcggctaagggcct	12	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2114283	T	T	2114283	2	4	201	1	0	0	0	0	0	0	0	1	748	912	32	4		4	AP3D1	19	2114283	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	15207	2114283	57014700	302	159101			2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2114369	2114369	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaccactcagtacatgCcgtgtccaagcatgtggcag	11	13	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2114369	T	T	2114369	1	4	201	0	1	0	0	0	0	0	0	0	748	754	26	4		4	AP3D1	19	2114369	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	86	2114369	57014614	303	159102			2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2115314	2115314	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgtggcggcgcttgcccttCttctccttctccttcctctt	7	17	4	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2115314	T	T	2115314	2	4	201	1	0	0	0	0	0	0	0	1	748	912	32	4		4	AP3D1	19	2115314	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	945	2115314	57013669	304	159103			2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2115341	2115341	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctccttcctctttttcctCctcttgtccttctccagctt	2	17	4	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2115341	T	T	2115341	2	4	201	1	0	0	0	0	0	0	0	1	748	854	30	4		4	AP3D1	19	2115341	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	27	2115341	57013642	305	159104			2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2115379	2115379	+	Missense_Mutation	SNP	C	T	T													cttctgccggtgccgccgctCctcctccagcttcacatact							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2115379	T	T	2115379	3	4	201	1	0	0	0	0	1	0	0	0	748	864	30	4	1475	4	AP3D1	19	2115379	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	38	2115379	57013604	306	159105	677	2	2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2115386	2115386	+	Silent	SNP	C	T	T													cggtgccgccgctcctcctcCagcttcacatactgatctga							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2115386	T	T	2115386	2	4	201	1	0	0	0	0	0	0	0	1	748	581	21	4		4	AP3D1	19	2115386	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	7	2115386	57013597	307	159106	677	2	2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2117215	2117215	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caatgcccccacccccgtatCcttacccttcggggactgga	8	18	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2117215	T	T	2117215	1	4	201	0	1	0	0	0	0	0	0	0	748	870	30	4		4	AP3D1	19	2117215	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1829	2117215	57011768	308	159107			2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2117397	2117397	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggggtcactgctggcaCctgcccggaaggccactcgg	14	15	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2117397	T	T	2117397	1	4	201	0	1	0	0	0	0	0	0	0	748	522	18	4		4	AP3D1	19	2117397	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	182	2117397	57011586	309	159108			2	123		9	8	6590	N	C	3.668366e-12
AP3D1	8943	broad.mit.edu	37	chr19	2120872	2120872	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactcactctgagaactcCccgcagatccaggcggcagc	9	18	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2120872	T	T	2120872	2	4	201	1	0	0	0	0	0	0	0	1	748	610	22	4		4	AP3D1	19	2120872	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	3475	2120872	57008111	310	159109			2	123		9	8	6590	N	C	3.668366e-12
MUC16	94025	broad.mit.edu	37	chr19	9046894	9046894	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctggtttctgcaggatgAgtgagccacgtggctgtagt	16	7	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9046894	G	G	9046894	2	3	201	1	0	0	0	0	0	0	0	1	10067	291	11	5		5	MUC16	19	9046894	Silent	SNP	A	TCGA-67-6217-01A-11D-1753-08	6926022	9046894	50082089	311	159110											
MUC16	94025	broad.mit.edu	37	chr19	9063968	9063968	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccaggggtcagggaggaAgctagctctgtctgaatcct	13	9	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9063968	C	C	9063968	2	2	201	1	0	0	0	0	0	0	0	1	10067	59	3	5		5	MUC16	19	9063968	Silent	SNP	A	TCGA-67-6217-01A-11D-1753-08	17074	9063968	50065015	312	159111											
CDKN2D	1032	broad.mit.edu	37	chr19	10677830	10677830	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgagacccctggcgtcCctgcgatggagatcagattc	14	11	1	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10677830	G	G	10677830	3	3	201	1	0	0	0	0	1	0	0	0	3196	622	22	4	99	4	CDKN2D	19	10677830	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1613862	10677830	48451153	313	159112											
GATAD2A	54815	broad.mit.edu	37	chr19	19612093	19612093	+	Frame_Shift_Del	DEL	C	-	-													ctcaaggtggagcacaccagCcggctgaaggccgcctttgt							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19612093	-	-	19612093	7	5	201	1	0	1	0	1	0	0	0	0	6322	738	26	0	1398	0	GATAD2A	19	19612093	Frame_Shift_Del	DEL	C	TCGA-67-6217-01A-11D-1753-08	8934263	19612093	39516890	314	159113											
FXYD7	53822	broad.mit.edu	37	chr19	35642229	35642229	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgggtatcctcatcgtcaTcagtaagtgcgacccattcc	9	13	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35642229	G	G	35642229	3	3	201	1	0	0	0	0	1	0	0	0	6183	1435	50	5	144	5	FXYD7	19	35642229	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	16030136	35642229	23486754	315	159114											
CD22	933	broad.mit.edu	37	chr19	35832227	35832227	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggagcggagaggtcagctTgggacccttgccctccagat	15	11	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35832227	A	A	35832227	1	1	201	0	1	0	0	0	0	0	0	0	3015	1827	63	5		5	CD22	19	35832227	Intron	SNP	T	TCGA-67-6217-01A-11D-1753-08	189998	35832227	23296756	316	159115											
PRODH2	58510	broad.mit.edu	37	chr19	36297327	36297327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggccagctggcccgggCctacctctgactggtggcct	14	15	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36297327	A	A	36297327	1	1	201	0	1	0	0	0	0	0	0	0	12655	754	26	3		3	PRODH2	19	36297327	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	465100	36297327	22831656	317	159116											
PLEKHG2	64857	broad.mit.edu	37	chr19	39915029	39915029	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttggcatggaagcagcctgGatccccagggcccaggcgac	14	14	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39915029	C	C	39915029	3	2	201	1	0	0	0	0	1	0	0	0	12164	1174	41	4	3326	4	PLEKHG2	19	39915029	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	3617702	39915029	19213954	318	159117											
FCGBP	8857	broad.mit.edu	37	chr19	40434113	40434113	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagataaggaggcggggGtaggccttgctgtaggccag	19	7	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40434113	T	T	40434113	4	4	201	1	0	0	0	0	0	1	0	0	5835	1256	44	3	16201	3	FCGBP	19	40434113	Nonsense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	519084	40434113	18694870	319	159118											
SPTBN4	57731	broad.mit.edu	37	chr19	41071177	41071178	+	Intron	INS	-	AAAAG	AAAAG													gagactttatctcaaaaaaaINSaaaagaaaagaaaagaaaag					rs112419378		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AAAAG	41071178	AAAAG	AAAAG	41071177	6	5	201	0	1	1	1	0	0	0	0	0	15239	29	1	0		0	SPTBN4	19	41071177	Intron	INS	-	TCGA-67-6217-01A-11D-1753-08	637064	41071177	18057806	320	159119											
ZNF225	7768	broad.mit.edu	37	chr19	44635941	44635941	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtctttcaagacatgtgCgagtccacagtggagagaca	12	9	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44635941	T	T	44635941	4	4	201	1	0	0	0	0	0	1	0	0	17905	760	27	4	1188	4	ZNF225	19	44635941	Nonsense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	3564764	44635941	14493042	321	159120											
RSPH6A	81492	broad.mit.edu	37	chr19	46307742	46307742	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagttggcctcgttgcccGggaagggtgggtagctgacg	19	8	0	1	rs76423334	byFrequency;by1000genomes	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46307742	A	A	46307742	3	1	201	1	0	0	0	0	1	0	0	0	13818	1116	39	4	748	4	RSPH6A	19	46307742	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	1671801	46307742	12821241	322	159121											
KLK14	43847	broad.mit.edu	37	chr19	51582028	51582028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatcatttgcttaaatccCagtcccaaataatccctacc	3	14	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51582028	A	A	51582028	1	1	201	0	1	0	0	0	0	0	0	0	8473	609	21	2		2	KLK14	19	51582028	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	5274286	51582028	7546955	323	159122											
SIGLEC10	89790	broad.mit.edu	37	chr19	51920620	51920620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctgtccagtcctgtcggGggtaggagaaagagcagggc	16	10	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51920620	T	T	51920620	3	4	201	1	0	0	0	0	1	0	0	0	14419	1232	43	2	1996	2	SIGLEC10	19	51920620	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	338592	51920620	7208363	324	159123											
SIGLEC14	100049587	broad.mit.edu	37	chr19	52149454	52149454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcccaactcctgtccctGttctcatacgggggtctcca	8	17	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52149454	T	T	52149454	1	4	201	0	1	0	0	0	0	0	0	0	14422	1392	48	3		3	SIGLEC14	19	52149454	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	228834	52149454	6979529	325	159124											
HAS1	3036	broad.mit.edu	37	chr19	52220476	52220476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggggccaggatcagcaCagacccctgcatcaggctga	14	12	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52220476	A	A	52220476	1	1	201	0	1	0	0	0	0	0	0	0	7027	493	17	3		3	HAS1	19	52220476	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	71022	52220476	6908507	326	159125											
ZNF813	126017	broad.mit.edu	37	chr19	53995018	53995018	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatcggaaaacacaccttgCatgtcatcatagacttcata	5	10	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53995018	T	T	53995018	3	4	201	1	0	0	0	0	1	0	0	0	18304	710	25	4	1542	4	ZNF813	19	53995018	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1774542	53995018	5133965	327	159126											
LILRB2	10288	broad.mit.edu	37	chr19	54782613	54782613	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcactaattggattccccCggcagggcctgtgcagagtc	11	13	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54782613	A	A	54782613	1	1	201	0	1	0	0	0	0	0	0	0	8863	667	23	1		1	LILRB2	19	54782613	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	787595	54782613	4346370	328	159127											
KIR2DL1	3802	broad.mit.edu	37	chr19	55281289	55281289	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtcgcggctgcctgtctGctccggcagcaccatgtcgc	13	16	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55281289	T	T	55281289	1	4	201	0	1	0	0	0	0	0	0	0	8387	1334	46	3		3	KIR2DL1	19	55281289	5'UTR	SNP	G	TCGA-67-6217-01A-11D-1753-08	498676	55281289	3847694	329	159128											
KIR3DL1	3811	broad.mit.edu	37	chr19	55354397	55354397	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtacaggaccctcttatatCcgcttttggaaccctgggga	10	11	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55354397	A	A	55354397	1	1	201	0	1	0	0	0	0	0	0	0	8391	870	30	3		3	KIR3DL1	19	55354397	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	73108	55354397	3774586	330	159129											
ZNF551	90233	broad.mit.edu	37	chr19	58196753	58196753	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacatgtaacatccctgGgtaaggccctagcatccctc	8	14	0	0	rs142211450	by1000genomes	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58196753	T	T	58196753	3	4	201	1	0	0	0	0	1	0	0	0	18110	1246	43	2	163	2	ZNF551	19	58196753	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	2842356	58196753	932230	331	159130											
C19orf18	147685	broad.mit.edu	37	chr19	58472789	58472789	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaacttttccagctcattttCgttctctggaagtaggtgcg	10	9	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58472789	T	T	58472789	3	4	201	1	0	0	0	0	1	0	0	0	1929	893	31	4	153	4	C19orf18	19	58472789	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	276036	58472789	656194	332	159131											
PROKR2	128674	broad.mit.edu	37	chr20	5294904	5294904	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtcatgtcctcatcctcatCcatagggaggtcataatcac	8	12	5	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5294904	T	T	5294904	3	4	201	1	0	0	0	0	1	0	0	0	12659	855	30	4	1049	4	PROKR2	20	5294904	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08		5294904	57730616	333	159132											
BTBD3	22903	broad.mit.edu	37	chr20	11900532	11900532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttgtttatgctgtatttGtaccctgctggtttcacagt	9	7	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11900532	T	T	11900532	1	4	201	0	1	0	0	0	0	0	0	0	1554	1392	48	3		3	BTBD3	20	11900532	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	6605628	11900532	51124988	334	159133											
BPIL1	80341	broad.mit.edu	37	chr20	31605028	31605028	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggagagtcagttgtagggtGactgaattgtgagctcccaa	14	6	1	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31605028	A	A	31605028	1	1	201	0	1	0	0	0	0	0	0	0	1500	1305	45	4		4	BPIL1	20	31605028	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	19704496	31605028	31420492	335	159134											
SLC12A5	57468	broad.mit.edu	37	chr20	44682317	44682317	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatttctgtatcatttacGcatcactgcggaggtcgagg	10	10	3	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44682317	A	A	44682317	3	1	201	1	0	0	0	0	1	0	0	0	14499	1087	38	4	2851	4	SLC12A5	20	44682317	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	13077289	44682317	18343203	336	159135											
ARFGEF2	10564	broad.mit.edu	37	chr20	47630484	47630484	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacaatatgaaactccctgAgcaactgtcagaggtaggtg	11	8	1	4			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47630484	T	T	47630484	3	4	201	1	0	0	0	0	1	0	0	0	855	304	11	5	4284	5	ARFGEF2	20	47630484	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	2948167	47630484	15395036	337	159136											
ATP9A	10079	broad.mit.edu	37	chr20	50313790	50313791	+	Intron	INS	-	TG	TG													tatttgtgtgtgtgtgtgtcINStgtgtgtgtgtgtgtctgtc					rs150084393	by1000genomes	TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	50313791	TG	TG	50313790	6	5	201	0	1	1	1	0	0	0	0	0	1202	928	32	0		0	ATP9A	20	50313790	Intron	INS	-	TCGA-67-6217-01A-11D-1753-08	2683306	50313790	12711730	338	159137											
TSHZ2	128553	broad.mit.edu	37	chr20	51871354	51871354	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagtaactcagcatcagatTgtacagcctctacaactgag	7	12	3	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51871354	A	A	51871354	3	1	201	1	0	0	0	0	1	0	0	0	16749	1812	63	5	1363	5	TSHZ2	20	51871354	Missense_Mutation	SNP	T	TCGA-67-6217-01A-11D-1753-08	1557564	51871354	11154166	339	159138											
ZNF217	7764	broad.mit.edu	37	chr20	52193560	52193560	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagaacattctgaaaaacAgaaggcatctccttaagctg	7	11	2	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52193560	G	G	52193560	2	3	201	1	0	0	0	0	0	0	0	1	17898	175	7	5		5	ZNF217	20	52193560	Silent	SNP	A	TCGA-67-6217-01A-11D-1753-08	322206	52193560	10831960	340	159139											
CASS4	57091	broad.mit.edu	37	chr20	55012553	55012553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagttgggcggaggggcccCagccccctactgcccaagtc	15	15	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55012553	A	A	55012553	3	1	201	1	0	0	0	0	1	0	0	0	2709	595	21	2	376	2	CASS4	20	55012553	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	2818993	55012553	8012967	341	159140											
SLMO2	51012	broad.mit.edu	37	chr20	57613683	57613683	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttgtaacagtttcccaCgggtggctgccgatgtgaac	13	10	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57613683	A	A	57613683	2	1	201	1	0	0	0	0	0	0	0	1	14865	523	19	3		3	SLMO2	20	57613683	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	2601130	57613683	5411837	342	159141											
ZNF512B	57473	broad.mit.edu	37	chr20	62595129	62595129	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccctcccagcgccttccgGgagctgccttaccttctgac	8	19	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62595129	A	A	62595129	1	1	201	0	1	0	0	0	0	0	0	0	18084	1247	43	4		4	ZNF512B	20	62595129	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	4981446	62595129	430391	343	159142											
ADAMTS5	11096	broad.mit.edu	37	chr21	28327084	28327084	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagccacagtgaaggctGcgtggaggccatcgtcttca	14	11	2	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28327084	T	T	28327084	3	4	201	1	0	0	0	0	1	0	0	0	269	1319	46	3	1609	3	ADAMTS5	21	28327084	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08		28327084	19802811	344	159143											
KRTAP24-1	643803	broad.mit.edu	37	chr21	31654799	31654799	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagttaagttgtccaaagCagttggaaccgttgcggagg	14	7	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31654799	G	G	31654799	3	3	201	1	0	0	0	0	1	0	0	0	8614	710	25	4	316	4	KRTAP24-1	21	31654799	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	3327715	31654799	16475096	345	159144											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46012274	46012274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcagtcgtccacctgccagGagtcggagcaagagtcacag	14	12	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46012274	T	T	46012274	3	4	201	1	0	0	0	0	1	0	0	0	8584	1174	41	3	1009	3	KRTAP10-6	21	46012274	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	14357475	46012274	2117621	346	159145											
ADARB1	104	broad.mit.edu	37	chr21	46604837	46604837	+	Splice_Site	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaactctttttctctcttaGaaccagcagatagacaccca	4	12	3	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46604837	C	C	46604837	5	2	201	1	0	0	0	0	0	0	1	0	282	956	33	4	1542	4	ADARB1	21	46604837	Splice_Site	SNP	G	TCGA-67-6217-01A-11D-1753-08	592563	46604837	1525058	347	159146											
ADARB1	104	broad.mit.edu	37	chr21	46605094	46605094	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccttttccacaaccatttGaattttggccccatttccca	3	15	0	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46605094	C	C	46605094	1	2	201	0	1	0	0	0	0	0	0	0	282	1305	45	4		4	ADARB1	21	46605094	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	257	46605094	1524801	348	159147											
MCM3AP	8888	broad.mit.edu	37	chr21	47703825	47703825	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcaccaactgtgtcgaagCagaggaaattttcagatgta	11	7	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47703825	G	G	47703825	1	3	201	0	1	0	0	0	0	0	0	0	9481	725	25	4		4	MCM3AP	21	47703825	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	1098731	47703825	426070	349	159148											
MN1	4330	broad.mit.edu	37	chr22	28146822	28146822	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccctttcaaattaacagaGgggtggggtaaggttgaggg	17	5	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28146822	T	T	28146822	1	4	201	0	1	0	0	0	0	0	0	0	9767	1015	35	2		2	MN1	22	28146822	3'UTR	SNP	G	TCGA-67-6217-01A-11D-1753-08		28146822	23157744	350	159149											
C22orf42	150297	broad.mit.edu	37	chr22	32545790	32545790	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaataggagaaaggaaaacGccatgaggatcggatcatgc	13	7	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32545790	A	A	32545790	1	1	201	0	1	0	0	0	0	0	0	0	2171	1102	38	4		4	C22orf42	22	32545790	Intron	SNP	G	TCGA-67-6217-01A-11D-1753-08	4398968	32545790	18758776	351	159150											
ARSF	416	broad.mit.edu	37	chrX	3007540	3007540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgatgtcttctcaggcaCagtaaggaaactttccttct	7	10	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3007540	A	A	3007540	3	1	201	1	0	0	0	0	1	0	0	0	995	477	17	3	856	3	ARSF	23	3007540	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08		3007540	152263020	352	159151											
GLRA2	2742	broad.mit.edu	37	chrX	14550274	14550274	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatatcaaatatctttacCaaaatgtaaagttaaaaatg	3	5	2	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14550274	A	A	14550274	1	1	201	0	1	0	0	0	0	0	0	0	6519	609	21	2		2	GLRA2	23	14550274	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	11542734	14550274	140720286	353	159152											
BMX	660	broad.mit.edu	37	chrX	15544216	15544219	+	Splice_Site	DEL	TGAG	-	-													gaggaaaacctggatgattaTgagtgagtattgaaagtctt							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15544219	-	-	15544216	8	5	201	1	0	1	0	1	0	0	1	0	1479	1471	51	0	912	0	BMX	23	15544216	Splice_Site	DEL	TGAG	TCGA-67-6217-01A-11D-1753-08	993942	15544216	139726344	354	159153											
RAI2	10742	broad.mit.edu	37	chrX	17818511	17818511	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacctttccccatattataAtcatacaaattttaaaaagc	2	10	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17818511	C	C	17818511	1	2	201	0	1	0	0	0	0	0	0	0	13117	116	4	5		5	RAI2	23	17818511	3'UTR	SNP	A	TCGA-67-6217-01A-11D-1753-08	2274295	17818511	137452049	355	159154											
PPEF1	5475	broad.mit.edu	37	chrX	18801833	18801834	+	Intron	INS	-	A	A													acagagcgagactccatctcINSaaaaaaaaaacaaaaacaaa					rs112707495		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18801834	A	A	18801833	6	5	201	0	1	1	1	0	0	0	0	0	12403	841	29	0		0	PPEF1	23	18801833	Intron	INS	-	TCGA-67-6217-01A-11D-1753-08	983322	18801833	136468727	356	159155											
PLP2	5355	broad.mit.edu	37	chrX	49029519	49029519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttcagtgcctccacacCaggctactcctccctgtcgg	8	18	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49029519	A	A	49029519	3	1	201	1	0	0	0	0	1	0	0	0	12200	594	21	2	146	2	PLP2	23	49029519	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	30227686	49029519	106241041	357	159156											
MAGEH1	28986	broad.mit.edu	37	chrX	55479280	55479280	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccgtagcagtccggtggAgtatgagttcttctgggggc	16	10	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55479280	C	C	55479280	3	2	201	1	0	0	0	0	1	0	0	0	9280	304	11	5	475	5	MAGEH1	23	55479280	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	6449761	55479280	99791280	358	159157											
MAGEH1	28986	broad.mit.edu	37	chrX	55479393	55479393	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagactggccttgtaattatGactgggattcggacgatgat	12	6	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55479393	A	A	55479393	3	1	201	1	0	0	0	0	1	0	0	0	9280	1290	45	4	588	4	MAGEH1	23	55479393	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	113	55479393	99791167	359	159158											
MTMR8	55613	broad.mit.edu	37	chrX	63568447	63568447	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aataaacacacatacacaaaCctaactttcccaataacact	0	13	0	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63568447	G	G	63568447	1	3	201	0	1	0	0	0	0	0	0	0	10043	522	18	4		4	MTMR8	23	63568447	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	8089054	63568447	91702113	360	159159											
POU3F4	5456	broad.mit.edu	37	chrX	82763714	82763714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgtctatcacgtcaagcGgccaacccctcaacgtgtac	7	17	4	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82763714	T	T	82763714	3	4	201	1	0	0	0	0	1	0	0	0	12373	1116	39	1	384	1	POU3F4	23	82763714	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	19195267	82763714	72506846	361	159160											
PAK3	5063	broad.mit.edu	37	chrX	110366401	110366401	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatgaatagtaacaaccggGattcttcagcactcaaccac	8	11	3	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110366401	A	A	110366401	3	1	201	1	0	0	0	0	1	0	0	0	11496	1174	41	4	72	4	PAK3	23	110366401	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	27602687	110366401	44904159	362	159161											
LUZP4	51213	broad.mit.edu	37	chrX	114537995	114537995	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgagcaggtagataagtaCcaagaattaaccaatattaa	7	5	0	3			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114537995	A	A	114537995	1	1	201	0	1	0	0	0	0	0	0	0	9175	522	18	3		3	LUZP4	23	114537995	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	4171594	114537995	40732565	363	159162											
AGTR2	186	broad.mit.edu	37	chrX	115304043	115304043	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccccttgtttggtgtatGgcctgtttgtcctcattgcc	10	11	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115304043	A	A	115304043	3	1	201	1	0	0	0	0	1	0	0	0	402	1348	47	4	512	4	AGTR2	23	115304043	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	766048	115304043	39966517	364	159163											
KIAA1210	57481	broad.mit.edu	37	chrX	118284535	118284535	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctcgaggcgtccagccgGccctcatttccccgcgtaga	11	17	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118284535	A	A	118284535	3	1	201	1	0	0	0	0	1	0	0	0	8284	1203	42	4	5177	4	KIAA1210	23	118284535	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	2980492	118284535	36986025	365	159164											
ATP1B4	23439	broad.mit.edu	37	chrX	119496040	119496040	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccatgagaaggcaactccGgtccagaagggctccatcct	11	13	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119496040	A	A	119496040	3	1	201	1	0	0	0	0	1	0	0	0	1139	1116	39	4	19	4	ATP1B4	23	119496040	Missense_Mutation	SNP	G	TCGA-67-6217-01A-11D-1753-08	1211505	119496040	35774520	366	159165											
UTP14A	10813	broad.mit.edu	37	chrX	129063425	129063425	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaaagctgactactccCaaggtcgtcaccaagccagg	8	14	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129063425	G	G	129063425	2	3	201	1	0	0	0	0	0	0	0	1	17222	581	21	4		4	UTP14A	23	129063425	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	9567385	129063425	26207135	367	159166											
FAM122B	159090	broad.mit.edu	37	chrX	133923352	133923352	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcactgacaaaatattaactCttccacacactgcaattttt	2	11	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133923352	A	A	133923352	1	1	201	0	1	0	0	0	0	0	0	0	5466	928	32	3		3	FAM122B	23	133923352	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	4859927	133923352	21347208	368	159167											
BRS3	680	broad.mit.edu	37	chrX	135570341	135570341	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaaatgacacagaatcatCaagctctgtggtttctaacg	7	10	4	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135570341	T	T	135570341	3	4	201	1	0	0	0	0	1	0	0	0	1531	838	29	4	70	4	BRS3	23	135570341	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	1646989	135570341	19700219	369	159168											
HTATSF1	27336	broad.mit.edu	37	chrX	135592353	135592353	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcaaatcactgcccaggCatgggatgggactacagatt	11	11	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135592353	G	G	135592353	3	3	201	1	0	0	0	0	1	0	0	0	7503	710	25	4	1067	4	HTATSF1	23	135592353	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	22012	135592353	19678207	370	159169											
ARHGEF6	9459	broad.mit.edu	37	chrX	135751563	135751563	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttgctcctaggccttcCctgaaagcatgagcagcgtg	10	13	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135751563	A	A	135751563	1	1	201	0	1	0	0	0	0	0	0	0	912	638	22	2		2	ARHGEF6	23	135751563	Intron	SNP	C	TCGA-67-6217-01A-11D-1753-08	159210	135751563	19518997	371	159170											
MAGEC1	9947	broad.mit.edu	37	chrX	140994659	140994659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcctcctcctccaCtttattgagtcttttccaga	3	17	1	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140994659	A	A	140994659	3	1	201	1	0	0	0	0	1	0	0	0	9272	565	20	3	1475	3	MAGEC1	23	140994659	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	5243096	140994659	14275901	372	159171											
MAGEC2	51438	broad.mit.edu	37	chrX	141291003	141291003	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctccctcccagcatatacCcctactgcattcagcacttc	4	18	1	0			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141291003	G	G	141291003	2	3	201	1	0	0	0	0	0	0	0	1	9273	610	22	4		4	MAGEC2	23	141291003	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	296344	141291003	13979557	373	159172											
SLITRK2	84631	broad.mit.edu	37	chrX	144905670	144905670	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatttctggggagggaggCtatctgtccagacagcccaa	12	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144905670	T	T	144905670	3	4	201	1	0	0	0	0	1	0	0	0	14857	797	28	4	1729	4	SLITRK2	23	144905670	Missense_Mutation	SNP	C	TCGA-67-6217-01A-11D-1753-08	3614667	144905670	10364890	374	159173											
CXorf1	9142	broad.mit.edu	37	chrX	144909297	144909297	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagttttattaactcactAgcatccccactgactatatt	3	10	1	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144909297	G	G	144909297	2	3	201	1	0	0	0	0	0	0	0	1	4133	407	15	5		5	CXorf1	23	144909297	Silent	SNP	A	TCGA-67-6217-01A-11D-1753-08	3627	144909297	10361263	375	159174											
MTM1	4534	broad.mit.edu	37	chrX	149828153	149828153	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcgaataggtcatggtgAtaaaaaccacaccgatgctg	10	9	2	1			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149828153	T	T	149828153	3	4	201	1	0	0	0	0	1	0	0	0	10031	333	12	5	1319	5	MTM1	23	149828153	Missense_Mutation	SNP	A	TCGA-67-6217-01A-11D-1753-08	4918856	149828153	5442407	376	159175											
GABRA3	2556	broad.mit.edu	37	chrX	151366089	151366089	+	Intron	DEL	A	-	-													aagactttcccctacgctccAtaaattatcactcaccaaag							TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151366089	-	-	151366089	6	5	201	0	1	1	0	1	0	0	0	0	6222	232	8	0		0	GABRA3	23	151366089	Intron	DEL	A	TCGA-67-6217-01A-11D-1753-08	1537936	151366089	3904471	377	159176											
FAM50A	9130	broad.mit.edu	37	chrX	153678637	153678637	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagccgctgggaaccctaCgaccctgaaaagaagtggga	13	12	0	2			TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153678637	T	T	153678637	2	4	201	1	0	0	0	0	0	0	0	1	5628	547	19	4		4	FAM50A	23	153678637	Silent	SNP	C	TCGA-67-6217-01A-11D-1753-08	2312548	153678637	1591923	378	159177											
ATAD3A	55210	broad.mit.edu	37	chr1	1444624	1444624	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacggggtcctgaccgagGccatgatggacacccgcgtg	16	12	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1444624	T	T	1444624	1	4	202	0	1	0	0	0	0	0	0	0	1077	1218	42	3		3	ATAD3A	1	1444624	5'Flank	SNP	G	TCGA-71-6725-01A-11D-1855-08		1444624	247805997	1	159178											
C1orf86	199990	broad.mit.edu	37	chr1	2125596	2125596	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcagacagagagggcagaCagggggtactcagtagcgga	19	7	1	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2125596	G	G	2125596	1	3	202	0	1	0	0	0	0	0	0	0	2085	493	17	4		4	C1orf86	1	2125596	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	680972	2125596	247125025	2	159179											
CLCNKA	1187	broad.mit.edu	37	chr1	16355357	16355357	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgggtaaggggtcctgagcGggggtggcaggagtgggaac	22	6	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16355357	A	A	16355357	1	1	202	0	1	0	0	0	0	0	0	0	3500	1131	39	4		4	CLCNKA	1	16355357	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	14229761	16355357	232895264	3	159180											
UBR4	23352	broad.mit.edu	37	chr1	19511518	19511518	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagccacaaaatgtttgCattcaaattatctgcttctc	4	11	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19511518	T	T	19511518	1	4	202	0	1	0	0	0	0	0	0	0	17030	725	25	4		4	UBR4	1	19511518	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	3156161	19511518	229739103	4	159181											
HSPG2	3339	broad.mit.edu	37	chr1	22202133	22202133	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagacacctgctctcagcGggctgctgggcgtaggatgc	14	13	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22202133	T	T	22202133	2	4	202	1	0	0	0	0	0	0	0	1	7500	1103	39	1		1	HSPG2	1	22202133	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	2690615	22202133	227048488	5	159182											
NUDC	10726	broad.mit.edu	37	chr1	27272550	27272550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagattagacttgacacGggggtgctgggagaagggac	17	5	0	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27272550	T	T	27272550	1	4	202	0	1	0	0	0	0	0	0	0	10816	1131	39	1		1	NUDC	1	27272550	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	5070417	27272550	221978071	6	159183											
AHDC1	27245	broad.mit.edu	37	chr1	27874798	27874798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggctgagcaggccccacCgccccgtccacctcgcggct	11	20	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27874798	A	A	27874798	3	1	202	1	0	0	0	0	1	0	0	0	412	652	23	1	986	1	AHDC1	1	27874798	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	602248	27874798	221375823	7	159184											
PTPRU	10076	broad.mit.edu	37	chr1	29585152	29585152	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgggacgggcacagccCgggcaccctgggcgtctacg	16	16	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29585152	A	A	29585152	3	1	202	1	0	0	0	0	1	0	0	0	12921	652	23	1	351	1	PTPRU	1	29585152	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1710354	29585152	219665469	8	159185											
MACF1	23499	broad.mit.edu	37	chr1	39782890	39782890	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttatgtttccacagcactGgcttagtgatgtgaaggaca	10	8	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39782890	T	T	39782890	3	4	202	1	0	0	0	0	1	0	0	0	9232	1357	47	2	3718	2	MACF1	1	39782890	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	10197738	39782890	209467731	9	159186											
MAST2	23139	broad.mit.edu	37	chr1	46494741	46494741	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgatgtctgctgctttgggGatgggtgtctctgtgtttct	15	6	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46494741	T	T	46494741	1	4	202	0	1	0	0	0	0	0	0	0	9417	1189	41	3		3	MAST2	1	46494741	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	6711851	46494741	202755880	10	159187											
CYP4A22	284541	broad.mit.edu	37	chr1	47611775	47611775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccttcccgttttgcaccGggttctgctcaacacagcca	8	16	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47611775	T	T	47611775	2	4	202	1	0	0	0	0	0	0	0	1	4217	1103	39	1		1	CYP4A22	1	47611775	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	1117034	47611775	201638846	11	159188											
ORC1L	4998	broad.mit.edu	37	chr1	52847370	52847370	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctttagatgcttgagccGggaccttaggatctgctgca	13	10	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52847370	T	T	52847370	2	4	202	1	0	0	0	0	0	0	0	1	11355	1115	39	1		1	ORC1L	1	52847370	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	5235595	52847370	196403251	12	159189											
GPX7	2882	broad.mit.edu	37	chr1	53072531	53072531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagattgagagctttgcccGccgcacctacagtgtctcat	11	12	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53072531	A	A	53072531	3	1	202	1	0	0	0	0	1	0	0	0	6811	1087	38	4	320	4	GPX7	1	53072531	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	225161	53072531	196178090	13	159190											
DAB1	1600	broad.mit.edu	37	chr1	57611028	57611028	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggaaacttcatcaatccCgatcaatttggctttgtacc	7	11	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57611028	A	A	57611028	3	1	202	1	0	0	0	0	1	0	0	0	4250	652	23	1	1573	1	DAB1	1	57611028	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	4538497	57611028	191639593	14	159191											
C1orf87	127795	broad.mit.edu	37	chr1	60456396	60456396	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaagagcatattttctccCgaacggaatctgcgcaaggc	9	12	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60456396	A	A	60456396	2	1	202	1	0	0	0	0	0	0	0	1	2086	639	23	1		1	C1orf87	1	60456396	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	2845368	60456396	188794225	15	159192											
LEPR	3953	broad.mit.edu	37	chr1	66088639	66088639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccccaagaattgttcctGggcacaaggacttaattttc	8	10	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66088639	T	T	66088639	3	4	202	1	0	0	0	0	1	0	0	0	8800	1357	47	2	2714	2	LEPR	1	66088639	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	5632243	66088639	183161982	16	159193											
SERBP1	26135	broad.mit.edu	37	chr1	67881070	67881070	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattagtagaaaagtaacaTtgcaaaatttctaaataatg	5	3	1	1	rs150707419	by1000genomes	TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67881070	C	C	67881070	1	2	202	0	1	0	0	0	0	0	0	0	14188	1508	52	5		5	SERBP1	1	67881070	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	1792431	67881070	181369551	17	159194											
ACADM	34	broad.mit.edu	37	chr1	76227084	76227084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagatgatttttttggtttGcaaggagagagaatattcat	10	2	1	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76227084	T	T	76227084	1	4	202	0	1	0	0	0	0	0	0	0	113	1334	46	3		3	ACADM	1	76227084	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	8346014	76227084	173023537	18	159195											
DNTTIP2	30836	broad.mit.edu	37	chr1	94341405	94341405	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaaacatataagatggcaTtttaaaaaatcacttattct	5	5	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94341405	C	C	94341405	1	2	202	0	1	0	0	0	0	0	0	0	4722	1508	52	5		5	DNTTIP2	1	94341405	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	18114321	94341405	154909216	19	159196											
SYPL2	284612	broad.mit.edu	37	chr1	110022194	110022194	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccccacctggctattccCgaactggacagcacctcttc	7	19	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110022194	A	A	110022194	1	1	202	0	1	0	0	0	0	0	0	0	15582	667	23	1		1	SYPL2	1	110022194	3'UTR	SNP	C	TCGA-71-6725-01A-11D-1855-08	15680789	110022194	139228427	20	159197											
HSD3B1	3283	broad.mit.edu	37	chr1	120056843	120056843	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaatgtggcctgggccCacattctggccttgagggcc	14	12	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120056843	T	T	120056843	3	4	202	1	0	0	0	0	1	0	0	0	7457	594	21	4	707	4	HSD3B1	1	120056843	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	10034649	120056843	129193778	21	159198											
REG4	83998	broad.mit.edu	37	chr1	120341200	120341200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtacagatacatggccCcatcaatccactgccactgc	6	15	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120341200	A	A	120341200	3	1	202	1	0	0	0	0	1	0	0	0	13322	623	22	2	155	2	REG4	1	120341200	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	284357	120341200	128909421	22	159199											
MTMR11	10903	broad.mit.edu	37	chr1	149904135	149904135	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgaattataaatgatggCtagaagaagcgagggagtac	14	3	0	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149904135	T	T	149904135	1	4	202	0	1	0	0	0	0	0	0	0	10034	812	28	4		4	MTMR11	1	149904135	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	29562935	149904135	99346486	23	159200											
MTMR11	10903	broad.mit.edu	37	chr1	149907095	149907095	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggactcttgcagcccatccCactccatccctgctgttttc	7	17	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149907095	T	T	149907095	1	4	202	0	1	0	0	0	0	0	0	0	10034	609	21	4		4	MTMR11	1	149907095	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	2960	149907095	99343526	24	159201											
TARS2	80222	broad.mit.edu	37	chr1	150460030	150460030	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagctccgatccgcatcagActtagcccagccgaagcccc	8	17	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150460030	G	G	150460030	1	3	202	0	1	0	0	0	0	0	0	0	15679	290	10	5		5	TARS2	1	150460030	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	552935	150460030	98790591	25	159202											
ARNT	405	broad.mit.edu	37	chr1	150786623	150786623	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgcagttggggcaccaggGagggacatggagctgaagga	19	6	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150786623	T	T	150786623	2	4	202	1	0	0	0	0	0	0	0	1	969	1161	41	3		3	ARNT	1	150786623	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	326593	150786623	98463998	26	159203											
FLG2	388698	broad.mit.edu	37	chr1	152324365	152324365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatgtgtgtgtgagaccCctgagggcccttcactgtca	12	11	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152324365	A	A	152324365	3	1	202	1	0	0	0	0	1	0	0	0	5980	623	22	2	1282	2	FLG2	1	152324365	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1537742	152324365	96926256	27	159204											
SNAPIN	23557	broad.mit.edu	37	chr1	153631920	153631920	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaccttacttccatccCcagaactgtgccgcataaat	6	15	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153631920	G	G	153631920	1	3	202	0	1	0	0	0	0	0	0	0	14953	638	22	4		4	SNAPIN	1	153631920	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	1307555	153631920	95618701	28	159205											
NUP210L	91181	broad.mit.edu	37	chr1	154033406	154033406	+	Intron	DEL	T	-	-													attccatttaactagactcaTacagcttctacctttacatc							TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154033406	-	-	154033406	6	5	202	0	1	1	0	1	0	0	0	0	10856	1421	49	0		0	NUP210L	1	154033406	Intron	DEL	T	TCGA-71-6725-01A-11D-1855-08	401486	154033406	95217215	29	159206											
THBS3	7059	broad.mit.edu	37	chr1	155175049	155175049	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcccatcagccaggccCgcttgctgtaggttcacggc	13	15	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155175049	A	A	155175049	2	1	202	1	0	0	0	0	0	0	0	1	15978	639	23	1		1	THBS3	1	155175049	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	1141643	155175049	94075572	30	159207											
SYT11	23208	broad.mit.edu	37	chr1	155851258	155851258	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggtctgcgagagccccCgcaagcctgtggccaagtgg	16	12	1	2	rs140896977		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155851258	A	A	155851258	3	1	202	1	0	0	0	0	1	0	0	0	15586	652	23	1	1269	1	SYT11	1	155851258	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	676209	155851258	93399363	31	159208											
SEMA4A	64218	broad.mit.edu	37	chr1	156144922	156144922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgtctggagggtgcccCgagccaactgtagtgtctat	15	9	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156144922	A	A	156144922	2	1	202	1	0	0	0	0	0	0	0	1	14144	644	23	1		1	SEMA4A	1	156144922	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	293664	156144922	93105699	32	159209											
CRABP2	1382	broad.mit.edu	37	chr1	156670345	156670345	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggacttaccaggatcagttCcccatcgttggtcagttctc	9	12	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156670345	T	T	156670345	3	4	202	1	0	0	0	0	1	0	0	0	3876	864	30	4	69	4	CRABP2	1	156670345	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	525423	156670345	92580276	33	159210											
DUSP27	92235	broad.mit.edu	37	chr1	167095768	167095768	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaccacggcaggaggcgccGcgcagactcgatgtcctcgg	16	14	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167095768	A	A	167095768	3	1	202	1	0	0	0	0	1	0	0	0	4864	1087	38	4	1418	4	DUSP27	1	167095768	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	10425423	167095768	82154853	34	159211											
POU2F1	5451	broad.mit.edu	37	chr1	167358911	167358911	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagcgaattgatactccCagcttggaggagcccagtga	11	11	0	2	rs148052368	by1000genomes	TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167358911	A	A	167358911	2	1	202	1	0	0	0	0	0	0	0	1	12367	581	21	2		2	POU2F1	1	167358911	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	263143	167358911	81891710	35	159212											
ADCY10	55811	broad.mit.edu	37	chr1	167798655	167798655	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggtaaagttgtgccagcctCttcttcctattggataaggt	10	9	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167798655	G	G	167798655	3	3	202	1	0	0	0	0	1	0	0	0	293	912	32	4	1264	4	ADCY10	1	167798655	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	439744	167798655	81451966	36	159213											
F5	2153	broad.mit.edu	37	chr1	169510388	169510388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatctgaccgagggctgGggaaaggtttgtctgactga	17	7	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169510388	T	T	169510388	3	4	202	1	0	0	0	0	1	0	0	0	5391	1232	43	2	2786	2	F5	1	169510388	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	1711733	169510388	79740233	37	159214											
F5	2153	broad.mit.edu	37	chr1	169510961	169510961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgatagtgttcctctgGgggcactgtctgataaagac	12	7	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169510961	T	T	169510961	3	4	202	1	0	0	0	0	1	0	0	0	5391	1232	43	2	3359	2	F5	1	169510961	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	573	169510961	79739660	38	159215											
GORAB	92344	broad.mit.edu	37	chr1	170513816	170513816	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catggttttaaaatgttcttAttttcccactcacatacctg	4	10	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170513816	T	T	170513816	1	4	202	0	1	0	0	0	0	0	0	0	6638	464	16	5		5	GORAB	1	170513816	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	1002855	170513816	78736805	39	159216											
C1orf129	80133	broad.mit.edu	37	chr1	170940949	170940949	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtctcttttgtgttccCatgaagatccctcgattgta	8	10	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170940949	A	A	170940949	3	1	202	1	0	0	0	0	1	0	0	0	2016	594	21	2	567	2	C1orf129	1	170940949	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	427133	170940949	78309672	40	159217											
TDRD5	163589	broad.mit.edu	37	chr1	179620182	179620182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccatgctattgtatgcCgagaaaatatctcttctaag	9	8	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179620182	A	A	179620182	2	1	202	1	0	0	0	0	0	0	0	1	15855	644	23	1		1	TDRD5	1	179620182	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	8679233	179620182	69630439	41	159218											
ACBD6	84320	broad.mit.edu	37	chr1	180257416	180257416	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacataccaaagacgggtGgaaaagaagtattatttttg	9	4	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180257416	T	T	180257416	1	4	202	0	1	0	0	0	0	0	0	0	126	1363	47	2		2	ACBD6	1	180257416	3'UTR	SNP	G	TCGA-71-6725-01A-11D-1855-08	637234	180257416	68993205	42	159219											
DDX59	83479	broad.mit.edu	37	chr1	200635417	200635417	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagaatcagccttctgtGgattgctgagttttgatttc	10	8	3	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	200635417	T	T	200635417	3	4	202	1	0	0	0	0	1	0	0	0	4409	1348	47	2	1435	2	DDX59	1	200635417	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	20378001	200635417	48615204	43	159220											
NAV1	89796	broad.mit.edu	37	chr1	201751334	201751334	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaaagctacagacaaggGtaagcttgcagtgaagaata	13	6	0	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201751334	A	A	201751334	3	1	202	1	0	0	0	0	1	0	0	0	10277	1261	44	4	1773	4	NAV1	1	201751334	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	1115917	201751334	47499287	44	159221											
REN	5972	broad.mit.edu	37	chr1	204128652	204128652	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacaaccccatcaaactcGgccagcatgaagggtaaggc	9	15	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204128652	A	A	204128652	2	1	202	1	0	0	0	0	0	0	0	1	13332	1103	39	4		4	REN	1	204128652	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	2377318	204128652	45121969	45	159222											
PLEKHA6	22874	broad.mit.edu	37	chr1	204234122	204234122	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggctgcactgcggctaccCggaagctcaggagggggatg	18	10	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204234122	A	A	204234122	3	1	202	1	0	0	0	0	1	0	0	0	12155	652	23	1	2885	1	PLEKHA6	1	204234122	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	105470	204234122	45016499	46	159223											
PIK3C2B	5287	broad.mit.edu	37	chr1	204419113	204419113	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacagcagtgtctcccgaGgcagccggttcacctgcact	10	16	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204419113	A	A	204419113	3	1	202	1	0	0	0	0	1	0	0	0	12005	1000	35	4	2889	4	PIK3C2B	1	204419113	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	184991	204419113	44831508	47	159224											
NEK2	4751	broad.mit.edu	37	chr1	211843673	211843673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaattcatcagagtaacGgtatggaattcgcctgaatt	8	7	3	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211843673	T	T	211843673	3	4	202	1	0	0	0	0	1	0	0	0	10419	1116	39	1	638	1	NEK2	1	211843673	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	7424560	211843673	37406948	48	159225											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220368542	220368542	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaacttagaatataaaactGagcttccagggttttaaagt	7	5	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220368542	A	A	220368542	1	1	202	0	1	0	0	0	0	0	0	0	13044	1305	45	4		4	RAB3GAP2	1	220368542	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	8524869	220368542	28882079	49	159226											
TMEM63A	9725	broad.mit.edu	37	chr1	226055570	226055570	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccattacaacatagacaagGgtgaggagggtcattaccca	10	10	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226055570	A	A	226055570	1	1	202	0	1	0	0	0	0	0	0	0	16313	1247	43	4		4	TMEM63A	1	226055570	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	5687028	226055570	23195051	50	159227											
ITSN2	50618	broad.mit.edu	37	chr2	24440839	24440839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaatcagggccatctccCcttcagtgagaaagcctgac	8	13	3	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24440839	A	A	24440839	3	1	202	1	0	0	0	0	1	0	0	0	7997	623	22	2	1390	2	ITSN2	2	24440839	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08		24440839	218758534	51	159228											
AGBL5	60509	broad.mit.edu	37	chr2	27281274	27281274	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactaccccacaggtgggaCgagctatggccattgcagcc	13	13	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27281274	T	T	27281274	4	4	202	1	0	0	0	0	0	1	0	0	378	528	19	4	1712	4	AGBL5	2	27281274	Nonsense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	2840435	27281274	215918099	52	159229											
CCDC88A	55704	broad.mit.edu	37	chr2	55555500	55555501	+	Frame_Shift_Ins	INS	-	T	T													tcgagcttctaaagcagcaaINSttttttcttcttttatttca							TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55555501	T	T	55555500	7	5	202	1	0	1	1	0	0	0	0	0	2891	101	4	0	2752	0	CCDC88A	2	55555500	Frame_Shift_Ins	INS	-	TCGA-71-6725-01A-11D-1855-08	28274226	55555500	187643873	53	159230											
ANXA4	307	broad.mit.edu	37	chr2	70035044	70035044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttcttgtttagggagccGgcactgatgagggctgccta	15	8	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70035044	T	T	70035044	3	4	202	1	0	0	0	0	1	0	0	0	720	1116	39	1	331	1	ANXA4	2	70035044	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	14479544	70035044	173164329	54	159231											
ATP6V1B1	525	broad.mit.edu	37	chr2	71190063	71190063	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaaggggtgtcagattcctCcctacccctccctaagcctg	9	16	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71190063	A	A	71190063	1	1	202	0	1	0	0	0	0	0	0	0	1182	870	30	3		3	ATP6V1B1	2	71190063	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	1155019	71190063	172009310	55	159232											
ALMS1	7840	broad.mit.edu	37	chr2	73746728	73746728	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgtgtgataacattgtatCaaacaaaataaagggtactg	8	5	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73746728	G	G	73746728	1	3	202	0	1	0	0	0	0	0	0	0	535	841	29	4		4	ALMS1	2	73746728	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	2556665	73746728	169452645	56	159233											
AFF3	3899	broad.mit.edu	37	chr2	100181940	100181940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatccagcaagaaaacacGgtgcttacctgatgagctct	8	12	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100181940	T	T	100181940	1	4	202	0	1	0	0	0	0	0	0	0	358	1131	39	1		1	AFF3	2	100181940	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	26435212	100181940	143017433	57	159234											
TMEM182	130827	broad.mit.edu	37	chr2	103380896	103380896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcagttagtaagtaccCtctgtcctcagcctacttct	6	14	4	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103380896	A	A	103380896	1	1	202	0	1	0	0	0	0	0	0	0	16224	696	24	2		2	TMEM182	2	103380896	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	3198956	103380896	139818477	58	159235											
FOXD4L1	200350	broad.mit.edu	37	chr2	114257388	114257388	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctactggagcctggacccCgcctcccaggacatgttcga	10	16	0	0	rs144904377	byFrequency	TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114257388	A	A	114257388	2	1	202	1	0	0	0	0	0	0	0	1	6058	639	23	1		1	FOXD4L1	2	114257388	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	10876492	114257388	128941985	59	159236											
CLASP1	23332	broad.mit.edu	37	chr2	122139812	122139812	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagagcgcctgagagcctTgtgggagggagcggtgggga	21	6	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122139812	C	C	122139812	3	2	202	1	0	0	0	0	1	0	0	0	3485	1821	63	5	1185	5	CLASP1	2	122139812	Missense_Mutation	SNP	T	TCGA-71-6725-01A-11D-1855-08	7882424	122139812	121059561	60	159237											
PRPF40A	55660	broad.mit.edu	37	chr2	153572395	153572395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttatttgaaattattcggGcataaactaatcattaaaca	5	6	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153572395	A	A	153572395	1	1	202	0	1	0	0	0	0	0	0	0	12677	1218	42	4		4	PRPF40A	2	153572395	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	31432583	153572395	89626978	61	159238											
PRKRA	8575	broad.mit.edu	37	chr2	179312115	179312115	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcataaggaaatagaatttGagaggtaggatgctaacaac	10	4	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179312115	T	T	179312115	1	4	202	0	1	0	0	0	0	0	0	0	12630	1305	45	3		3	PRKRA	2	179312115	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	25739720	179312115	63887258	62	159239											
DNAJC10	54431	broad.mit.edu	37	chr2	183584807	183584807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaaagatgaagatctacGgaaaaagtatgacaaatatg	8	5	2	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183584807	T	T	183584807	3	4	202	1	0	0	0	0	1	0	0	0	4669	1116	39	1	284	1	DNAJC10	2	183584807	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	4272692	183584807	59614566	63	159240											
MAP2	4133	broad.mit.edu	37	chr2	210518170	210518170	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagcaggtaactaagggctCtactgtcaccaagtgcttgc	10	11	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210518170	A	A	210518170	1	1	202	0	1	0	0	0	0	0	0	0	9327	928	32	3		3	MAP2	2	210518170	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	26933363	210518170	32681203	64	159241											
SETD5	55209	broad.mit.edu	37	chr3	9488897	9488897	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacaaaaactgaagcccCtgaatctgaagttagcaact	8	9	1	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9488897	A	A	9488897	3	1	202	1	0	0	0	0	1	0	0	0	14247	681	24	2	1734	2	SETD5	3	9488897	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08		9488897	188533533	65	159242											
DHX30	22907	broad.mit.edu	37	chr3	47859533	47859533	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgggcccagcacaggcagcGtcagtgcaaacttcccccac	10	17	1	0	rs138729543		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47859533	A	A	47859533	3	1	202	1	0	0	0	0	1	0	0	0	4544	1145	40	4	56	4	DHX30	3	47859533	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	38370636	47859533	150162897	66	159243											
ABHD14B	84836	broad.mit.edu	37	chr3	52003547	52003547	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatcagcacccggtggttGggcagctgcttcaggtgctc	14	11	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52003547	T	T	52003547	2	4	202	1	0	0	0	0	0	0	0	1	80	1335	47	2		2	ABHD14B	3	52003547	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	4144014	52003547	146018883	67	159244											
PTPRG	5793	broad.mit.edu	37	chr3	62254711	62254711	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacttttttctttctgcagcGaaaatgtgatcagtattggc	8	7	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62254711	A	A	62254711	3	1	202	1	0	0	0	0	1	0	0	0	12910	1072	37	4	2954	4	PTPRG	3	62254711	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	10251164	62254711	135767719	68	159245											
ADAMTS9	56999	broad.mit.edu	37	chr3	64619437	64619437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgatgttaaaatgcttccCgtcaaagtgagcacactgtt	9	8	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64619437	A	A	64619437	3	1	202	1	0	0	0	0	1	0	0	0	273	652	23	1	3940	1	ADAMTS9	3	64619437	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	2364726	64619437	133402993	69	159246											
ALDH1L1	10840	broad.mit.edu	37	chr3	125856586	125856586	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtccaggtttcccctcttgtCttatgtagtcatagatgcag	9	10	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125856586	A	A	125856586	1	1	202	0	1	0	0	0	0	0	0	0	494	928	32	3		3	ALDH1L1	3	125856586	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	61237149	125856586	72165844	70	159247											
PLXND1	23129	broad.mit.edu	37	chr3	129289675	129289675	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcccagggactcgttgaccGagcagtggatgattctgtca	13	11	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129289675	T	T	129289675	4	4	202	1	0	0	0	0	0	1	0	0	12222	1059	37	3	2145	3	PLXND1	3	129289675	Nonsense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	3433089	129289675	68732755	71	159248											
NEK11	79858	broad.mit.edu	37	chr3	130947505	130947505	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatcaggaatgagggatcCcagcctgcttacagaacaaa	10	9	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130947505	A	A	130947505	2	1	202	1	0	0	0	0	0	0	0	1	10418	610	22	2		2	NEK11	3	130947505	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	1657830	130947505	67074925	72	159249											
HPS3	84343	broad.mit.edu	37	chr3	148884898	148884898	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcagaagacactattgcCggcctcagtgtccatgttct	8	12	3	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148884898	A	A	148884898	2	1	202	1	0	0	0	0	0	0	0	1	7407	639	23	1		1	HPS3	3	148884898	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	17937393	148884898	49137532	73	159250											
P2RY1	5028	broad.mit.edu	37	chr3	152553609	152553609	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggctgtccccaacgggaCggacgctgccttcctggccg	14	17	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152553609	T	T	152553609	3	4	202	1	0	0	0	0	1	0	0	0	11440	536	19	4	40	4	P2RY1	3	152553609	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	3668711	152553609	45468821	74	159251											
SKIL	6498	broad.mit.edu	37	chr3	170078422	170078422	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaagtagtcagagctcgctGggtggaccagcagcattttc	12	9	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170078422	A	A	170078422	2	1	202	1	0	0	0	0	0	0	0	1	14471	1335	47	4		4	SKIL	3	170078422	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	17524813	170078422	27944008	75	159252											
FXR1	8087	broad.mit.edu	37	chr3	180665625	180665625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatcttttgggatgaatGgatataggcatttttttttc	9	3	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180665625	T	T	180665625	1	4	202	0	1	0	0	0	0	0	0	0	6175	1363	47	2		2	FXR1	3	180665625	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	10587203	180665625	17356805	76	159253											
CHRD	8646	broad.mit.edu	37	chr3	184103862	184103862	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtgaaggacctggagcCggaactgctgcggcacctgg	17	10	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184103862	T	T	184103862	3	4	202	1	0	0	0	0	1	0	0	0	3403	652	23	4	1905	4	CHRD	3	184103862	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	3438237	184103862	13918568	77	159254											
TP63	8626	broad.mit.edu	37	chr3	189582071	189582071	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattgcaaagacatgcccCatccagatcaaggtgatgac	8	11	1	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189582071	A	A	189582071	2	1	202	1	0	0	0	0	0	0	0	1	16516	581	21	2		2	TP63	3	189582071	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	5478209	189582071	8440359	78	159255											
CCDC50	152137	broad.mit.edu	37	chr3	191098712	191098712	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaaaagaaagcaagacccCgagtggaaggtagagtgtgt	14	6	0	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191098712	A	A	191098712	2	1	202	1	0	0	0	0	0	0	0	1	2848	639	23	1		1	CCDC50	3	191098712	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	1516641	191098712	6923718	79	159256											
RNF168	165918	broad.mit.edu	37	chr3	196210592	196210592	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctatatgaacagaaaacacTggcatacagtaggaggtcaa	9	7	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196210592	C	C	196210592	1	2	202	0	1	0	0	0	0	0	0	0	13570	1595	55	5		5	RNF168	3	196210592	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	5111880	196210592	1811838	80	159257											
SLBP	7884	broad.mit.edu	37	chr4	1705399	1705399	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtcagagcatctggaacGgggtttagggccttcaggag	15	9	3	1	rs41286667	byFrequency;by1000genomes	TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1705399	T	T	1705399	3	4	202	1	0	0	0	0	1	0	0	0	14485	1116	39	1	631	1	SLBP	4	1705399	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08		1705399	189448877	81	159258											
EVC	2121	broad.mit.edu	37	chr4	5785247	5785247	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacagggtcctgccgtgaCctgtaaccccatctgtggtt	10	14	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5785247	T	T	5785247	1	4	202	0	1	0	0	0	0	0	0	0	5327	522	18	4		4	EVC	4	5785247	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	4079848	5785247	185369029	82	159259											
RASL11B	65997	broad.mit.edu	37	chr4	53729428	53729428	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgacgttcttttttctgaCgtgcagcactggtggtccgg	12	9	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53729428	T	T	53729428	1	4	202	0	1	0	0	0	0	0	0	0	13190	551	19	4		4	RASL11B	4	53729428	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	47944181	53729428	137424848	83	159260											
NFKB1	4790	broad.mit.edu	37	chr4	103498166	103498166	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccttgcctatttgcaaGcagaaggtggaggggaccgg	15	9	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103498166	C	C	103498166	3	2	202	1	0	0	0	0	1	0	0	0	10470	971	34	4	563	4	NFKB1	4	103498166	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	49768738	103498166	87656110	84	159261											
GALNT7	51809	broad.mit.edu	37	chr4	174213396	174213396	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaatatttagcagaaaTtgtgttaattgacgatttca	8	3	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174213396	C	C	174213396	3	2	202	1	0	0	0	0	1	0	0	0	6280	1493	52	5	735	5	GALNT7	4	174213396	Missense_Mutation	SNP	T	TCGA-71-6725-01A-11D-1855-08	70715230	174213396	16940880	85	159262											
KIAA1430	57587	broad.mit.edu	37	chr4	186085218	186085218	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaagagtggatctggccCgtcttgacaatggtgatgag	15	8	2	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186085218	A	A	186085218	3	1	202	1	0	0	0	0	1	0	0	0	8302	652	23	1	170	1	KIAA1430	4	186085218	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	11871822	186085218	5069058	86	159263											
SLC12A7	10723	broad.mit.edu	37	chr5	1083938	1083938	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaagtactcgtcacaggCggcgctgggctgggagccgt	17	10	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1083938	T	T	1083938	3	4	202	1	0	0	0	0	1	0	0	0	14501	768	27	4	2268	4	SLC12A7	5	1083938	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08		1083938	179831322	87	159264											
RNASEN	29102	broad.mit.edu	37	chr5	31410834	31410835	+	Intron	DEL	AA	-	-													ctgaacctggaggttgagagAaaagtgtgtggcactcacat							TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31410835	-	-	31410834	6	5	202	0	1	1	0	1	0	0	0	0	13528	261	9	0		0	RNASEN	5	31410834	Intron	DEL	AA	TCGA-71-6725-01A-11D-1855-08	30326896	31410834	149504426	88	159265											
AMACR	23600	broad.mit.edu	37	chr5	33997299	33997299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgtcataccctatatgaGggttgagagctgtcaccagc	10	9	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33997299	T	T	33997299	1	4	202	0	1	0	0	0	0	0	0	0	562	1015	35	2		2	AMACR	5	33997299	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	2586465	33997299	146917961	89	159266											
OSMR	9180	broad.mit.edu	37	chr5	38885486	38885486	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggacttttcttgtgaaAccgaggacttcaagactttg	9	9	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38885486	G	G	38885486	3	3	202	1	0	0	0	0	1	0	0	0	11386	43	2	5	757	5	OSMR	5	38885486	Missense_Mutation	SNP	A	TCGA-71-6725-01A-11D-1855-08	4888187	38885486	142029774	90	159267											
RICTOR	253260	broad.mit.edu	37	chr5	38967423	38967423	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaataaattgaaaccctttTtattttaaattctacctgga	3	7	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38967423	A	A	38967423	1	1	202	0	1	0	0	0	0	0	0	0	13467	1856	64	5		5	RICTOR	5	38967423	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	81937	38967423	141947837	91	159268											
SKIV2L2	23517	broad.mit.edu	37	chr5	54649009	54649009	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttaggccttatttgccaCggagacctttgctatgggaa	10	9	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54649009	T	T	54649009	3	4	202	1	0	0	0	0	1	0	0	0	14473	536	19	4	1499	4	SKIV2L2	5	54649009	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	15681586	54649009	126266251	92	159269											
PDE4D	5144	broad.mit.edu	37	chr5	59064401	59064401	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccctcgctcacggtccCggaaatgtccagggaagcag	13	13	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59064401	A	A	59064401	1	1	202	0	1	0	0	0	0	0	0	0	11736	667	23	1		1	PDE4D	5	59064401	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	4415392	59064401	121850859	93	159270											
UTP15	84135	broad.mit.edu	37	chr5	72868276	72868276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaatatgttgaatctgtGggcagaatatccaactaacg	8	7	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72868276	T	T	72868276	1	4	202	0	1	0	0	0	0	0	0	0	17224	1363	47	2		2	UTP15	5	72868276	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	13803875	72868276	108046984	94	159271											
ERAP2	64167	broad.mit.edu	37	chr5	96253168	96253168	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcttcaatattttacaggtGaaactattttttgaatctct	4	6	3	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96253168	A	A	96253168	2	1	202	1	0	0	0	0	0	0	0	1	5246	1277	45	4		4	ERAP2	5	96253168	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	23384892	96253168	84662092	95	159272											
RAPGEF6	51735	broad.mit.edu	37	chr5	130834391	130834391	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tactccgctttgtagctactCcattagacaaatcgtcaaag	6	11	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130834391	A	A	130834391	1	1	202	0	1	0	0	0	0	0	0	0	13156	870	30	3		3	RAPGEF6	5	130834391	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	34581223	130834391	50080869	96	159273											
PSD2	84249	broad.mit.edu	37	chr5	139215322	139215322	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagaccctttacaactcCatcaagaatgaaaagctgga	6	12	1	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139215322	A	A	139215322	2	1	202	1	0	0	0	0	0	0	0	1	12753	581	21	2		2	PSD2	5	139215322	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	8380931	139215322	41699938	97	159274											
PCDHA3	56145	broad.mit.edu	37	chr5	140181071	140181071	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccgcgaggaactgtgcGggcggagcgcggagtgcagc	19	10	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140181071	T	T	140181071	3	4	202	1	0	0	0	0	1	0	0	0	11619	1116	39	1	291	1	PCDHA3	5	140181071	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	965749	140181071	40734189	98	159275											
PCDHB15	56121	broad.mit.edu	37	chr5	140625383	140625383	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcttgcagcttgatctGcagaccgggcagttgatatt	12	9	1	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140625383	T	T	140625383	2	4	202	1	0	0	0	0	0	0	0	1	11634	1306	46	3		3	PCDHB15	5	140625383	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	444312	140625383	40289877	99	159276											
PCDHGB7	56099	broad.mit.edu	37	chr5	140798770	140798770	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attactgacgtcaatgacaaCgcgccggttttcggacagtc	10	11	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140798770	T	T	140798770	2	4	202	1	0	0	0	0	0	0	0	1	11662	535	19	4		4	PCDHGB7	5	140798770	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	173387	140798770	40116490	100	159277											
RBM27	54439	broad.mit.edu	37	chr5	145649137	145649137	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccatctaaagtgaagaCaaaaacggaggtatctattt	7	8	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145649137	A	A	145649137	3	1	202	1	0	0	0	0	1	0	0	0	13235	478	17	3	2747	3	RBM27	5	145649137	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	4850367	145649137	35266123	101	159278											
LCP2	3937	broad.mit.edu	37	chr5	169688192	169688192	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagcatgaagagtttcaaaGagccagccttagaatacagt	10	7	1	5			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169688192	C	C	169688192	1	2	202	0	1	0	0	0	0	0	0	0	8764	957	33	4		4	LCP2	5	169688192	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	24039055	169688192	11227068	102	159279											
CLK4	57396	broad.mit.edu	37	chr5	178030838	178030838	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaacctttaatcttttttCttttaccttcaacggtttgc	3	9	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178030838	T	T	178030838	1	4	202	0	1	0	0	0	0	0	0	0	3571	928	32	4		4	CLK4	5	178030838	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	8342646	178030838	2884422	103	159280											
GPLD1	2822	broad.mit.edu	37	chr6	24433369	24433369	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaccaccaaatcccaccCgtagtactaacataaacatc	4	14	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24433369	A	A	24433369	1	1	202	0	1	0	0	0	0	0	0	0	6679	667	23	1		1	GPLD1	6	24433369	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08		24433369	146681698	104	159281											
HIST1H3D	8351	broad.mit.edu	37	chr6	26197521	26197521	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgacgaaaaaacgaaagtCtagcctttcgtacccgtata	7	9	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26197521	T	T	26197521	1	4	202	0	1	0	0	0	0	0	0	0	7225	928	32	4		4	HIST1H3D	6	26197521	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	1764152	26197521	144917546	105	159282											
PRR3	80742	broad.mit.edu	37	chr6	30529795	30529795	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccaggccatgggggtccCaccaggggaagctttcacaa	15	12	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30529795	A	A	30529795	2	1	202	1	0	0	0	0	0	0	0	1	12704	581	21	2		2	PRR3	6	30529795	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	4332274	30529795	140585272	106	159283											
VARS2	57176	broad.mit.edu	37	chr6	30889834	30889834	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagggatggctgggcccCcacagaggcttgaggggggc	20	9	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30889834	A	A	30889834	1	1	202	0	1	0	0	0	0	0	0	0	17251	638	22	2		2	VARS2	6	30889834	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	360039	30889834	140225233	107	159284											
KIFC1	3833	broad.mit.edu	37	chr6	33374158	33374158	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagtgagcgacttgacccCggcttagccctcggccccgg	15	15	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33374158	A	A	33374158	2	1	202	1	0	0	0	0	0	0	0	1	8382	639	23	1		1	KIFC1	6	33374158	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	2484324	33374158	137740909	108	159285											
DNAH8	1769	broad.mit.edu	37	chr6	38919259	38919259	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgggatctgaccccacCaatcaaattgatgcattggc	8	12	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38919259	A	A	38919259	2	1	202	1	0	0	0	0	0	0	0	1	4647	581	21	2		2	DNAH8	6	38919259	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	5545101	38919259	132195808	109	159286											
KIF6	221458	broad.mit.edu	37	chr6	39311449	39311449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaagtgttggtgacctgCtgcccaggaggagccaccga	13	13	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39311449	A	A	39311449	1	1	202	0	1	0	0	0	0	0	0	0	8378	812	28	3		3	KIF6	6	39311449	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	392190	39311449	131803618	110	159287											
NFYA	4800	broad.mit.edu	37	chr6	41048649	41048649	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaggtagtggtaccctctCtgattctctgtgagcactgc	10	12	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41048649	T	T	41048649	1	4	202	0	1	0	0	0	0	0	0	0	10484	928	32	4		4	NFYA	6	41048649	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	1737200	41048649	130066418	111	159288											
MCM3	4172	broad.mit.edu	37	chr6	52147618	52147618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacaaaatcctttaaggccCgctggaaggcaaccagctcc	8	15	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52147618	A	A	52147618	3	1	202	1	0	0	0	0	1	0	0	0	9480	652	23	1	2253	1	MCM3	6	52147618	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	11098969	52147618	118967449	112	159289											
COL19A1	1310	broad.mit.edu	37	chr6	70637868	70637868	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttcgagtacgaagaaacGccaaaaaggaacggtggttt	12	6	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70637868	A	A	70637868	3	1	202	1	0	0	0	0	1	0	0	0	3708	1087	38	4	348	4	COL19A1	6	70637868	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	18490250	70637868	100477199	113	159290											
FILIP1	27145	broad.mit.edu	37	chr6	76018574	76018574	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttttgacataggaatgcGggtgggtgtaggccgctggg	17	7	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76018574	T	T	76018574	3	4	202	1	0	0	0	0	1	0	0	0	5951	1116	39	1	170	1	FILIP1	6	76018574	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	5380706	76018574	95096493	114	159291											
ATG5	9474	broad.mit.edu	37	chr6	106682474	106682474	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgtggtaccttagcctatCgttgtttgaatggctcttca	9	9	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106682474	T	T	106682474	1	4	202	0	1	0	0	0	0	0	0	0	1104	899	31	4		4	ATG5	6	106682474	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	30663900	106682474	64432593	115	159292											
BCLAF1	9774	broad.mit.edu	37	chr6	136599486	136599486	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgatttacttttcaacGgactctcttcttggggttcc	8	11	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136599486	A	A	136599486	3	1	202	1	0	0	0	0	1	0	0	0	1388	1116	39	4	2269	4	BCLAF1	6	136599486	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	29917012	136599486	34515581	116	159293											
SLC22A3	6581	broad.mit.edu	37	chr6	160858113	160858113	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatatagactttttcatctcGggcgtggtggaactgccagg	12	8	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160858113	T	T	160858113	2	4	202	1	0	0	0	0	0	0	0	1	14569	1103	39	1		1	SLC22A3	6	160858113	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	24258627	160858113	10256954	117	159294											
THSD7A	221981	broad.mit.edu	37	chr7	11675659	11675659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcatcctaggttgtgcccCtacgtaatccagaagttatt	8	11	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11675659	A	A	11675659	1	1	202	0	1	0	0	0	0	0	0	0	16002	696	24	2		2	THSD7A	7	11675659	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08		11675659	147463004	118	159295											
CHN2	1124	broad.mit.edu	37	chr7	29519829	29519829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgctggccgtagccttcGgggtgaaggtgggtgtcaaa	16	8	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29519829	T	T	29519829	1	4	202	0	1	0	0	0	0	0	0	0	3394	1116	39	1		1	CHN2	7	29519829	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	17844170	29519829	129618834	119	159296											
GARS	2617	broad.mit.edu	37	chr7	30639610	30639610	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtagaccgagcaaaaatGgaagataccctgaagaggag	12	6	0	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30639610	A	A	30639610	3	1	202	1	0	0	0	0	1	0	0	0	6304	1348	47	4	382	4	GARS	7	30639610	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	1119781	30639610	128499053	120	159297											
ANLN	54443	broad.mit.edu	37	chr7	36447306	36447306	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggactatttttagatattGtgaatgttgtttaccctaag	8	4	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36447306	A	A	36447306	1	1	202	0	1	0	0	0	0	0	0	0	694	1392	48	4		4	ANLN	7	36447306	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	5807696	36447306	122691357	121	159298											
SFRP4	6424	broad.mit.edu	37	chr7	37951864	37951864	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcttttacatccaccacCgttgtgacctcattgcagcc	5	15	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37951864	A	A	37951864	2	1	202	1	0	0	0	0	0	0	0	1	14276	639	23	1		1	SFRP4	7	37951864	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	1504558	37951864	121186799	122	159299											
EPDR1	54749	broad.mit.edu	37	chr7	37988537	37988537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaccctgacacagccctGggatcctcttgacattcctc	8	15	1	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37988537	T	T	37988537	3	4	202	1	0	0	0	0	1	0	0	0	5205	1357	47	2	731	2	EPDR1	7	37988537	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	36673	37988537	121150126	123	159300											
GCK	2645	broad.mit.edu	37	chr7	44228397	44228397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcacccctggcaagacCcttctcaaagagcctgtgca	10	14	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44228397	A	A	44228397	1	1	202	0	1	0	0	0	0	0	0	0	6355	638	22	2		2	GCK	7	44228397	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	6239860	44228397	114910266	124	159301											
SUN3	256979	broad.mit.edu	37	chr7	48048514	48048514	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataatagttatttctgggAgtgaaattttgagttatttc	8	2	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48048514	C	C	48048514	1	2	202	0	1	0	0	0	0	0	0	0	15511	319	11	5		5	SUN3	7	48048514	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	3820117	48048514	111090149	125	159302											
EGFR	1956	broad.mit.edu	37	chr7	55237955	55237955	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgttacaccagggctccCcaggcctctcacatattgaa	8	13	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55237955	A	A	55237955	1	1	202	0	1	0	0	0	0	0	0	0	5007	638	22	2		2	EGFR	7	55237955	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	7189441	55237955	103900708	126	159303											
GUSB	2990	broad.mit.edu	37	chr7	65432837	65432837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatcaactccaggtgccCgtagtcgtgataccaagagt	10	11	1	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65432837	A	A	65432837	3	1	202	1	0	0	0	0	1	0	0	0	6967	652	23	1	433	1	GUSB	7	65432837	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	10194882	65432837	93705826	127	159304											
NPTX2	4885	broad.mit.edu	37	chr7	98254488	98254488	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacgacaaggtgaggcccGcctgcaccgccaccctcccc	9	20	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98254488	A	A	98254488	1	1	202	0	1	0	0	0	0	0	0	0	10698	1102	38	4		4	NPTX2	7	98254488	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	32821651	98254488	60884175	128	159305											
GPC2	221914	broad.mit.edu	37	chr7	99771299	99771299	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctctctctctttctttctCtctctctctttctttcttga	1	15	9	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99771299	T	T	99771299	1	4	202	0	1	0	0	0	0	0	0	0	6663	928	32	4		4	GPC2	7	99771299	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	1516811	99771299	59367364	129	159306											
LRCH4	4034	broad.mit.edu	37	chr7	100176069	100176069	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccaggtcccccagggcCgacccacgctgcccggcctc	14	20	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100176069	A	A	100176069	2	1	202	1	0	0	0	0	0	0	0	1	9022	639	23	1		1	LRCH4	7	100176069	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	404770	100176069	58962594	130	159307											
SLC26A5	375611	broad.mit.edu	37	chr7	103008069	103008069	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcccgatctagaggtaagaAaaccatttcattttaggaaa	8	7	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103008069	C	C	103008069	1	2	202	0	1	0	0	0	0	0	0	0	14634	29	1	5		5	SLC26A5	7	103008069	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	2832000	103008069	56130594	131	159308											
FAM71F1	84691	broad.mit.edu	37	chr7	128366947	128366947	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagggagggcacagggtacCatgcctcaaagagctttcta	12	9	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128366947	T	T	128366947	1	4	202	0	1	0	0	0	0	0	0	0	5663	609	21	4		4	FAM71F1	7	128366947	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	25358878	128366947	30771716	132	159309											
CNOT4	4850	broad.mit.edu	37	chr7	135048808	135048808	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatttaaactctctacagaActgctgttgtctgggagatt	8	7	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135048808	C	C	135048808	3	2	202	1	0	0	0	0	1	0	0	0	3653	58	2	5		5	CNOT4	7	135048808	Missense_Mutation	SNP	A	TCGA-71-6725-01A-11D-1855-08	6681861	135048808	24089855	133	159310											
FAM180A	389558	broad.mit.edu	37	chr7	135433376	135433376	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaagcccagtggaaccCcagtagctgcaggtatgccc	10	16	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135433376	A	A	135433376	1	1	202	0	1	0	0	0	0	0	0	0	5552	638	22	2		2	FAM180A	7	135433376	5'UTR	SNP	C	TCGA-71-6725-01A-11D-1855-08	384568	135433376	23705287	134	159311											
DGKI	9162	broad.mit.edu	37	chr7	137237268	137237268	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagttagaagcatgacttctCgacactggtgtagcctctct	9	10	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137237268	A	A	137237268	3	1	202	1	0	0	0	0	1	0	0	0	4511	884	31	3	1263	3	DGKI	7	137237268	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1803892	137237268	21901395	135	159312											
MKRN1	23608	broad.mit.edu	37	chr7	140154416	140154416	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccacctgcagccaaaagCataagcaacatctcgcccag	6	17	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140154416	T	T	140154416	3	4	202	1	0	0	0	0	1	0	0	0	9699	710	25	4	102	4	MKRN1	7	140154416	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	2917148	140154416	18984247	136	159313											
ZNF746	155061	broad.mit.edu	37	chr7	149173990	149173990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcaagcatggcccttccCttcctcctctcgccacctgt	7	19	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149173990	A	A	149173990	1	1	202	0	1	0	0	0	0	0	0	0	18258	696	24	2		2	ZNF746	7	149173990	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	9019574	149173990	9964673	137	159314											
MLL3	58508	broad.mit.edu	37	chr7	151860469	151860469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaacgttccttacgttccCgttcttgaaaactttcacta	5	11	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151860469	A	A	151860469	3	1	202	1	0	0	0	0	1	0	0	0	9715	652	23	1	4610	1	MLL3	7	151860469	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	2686479	151860469	7278194	138	159315											
LPL	4023	broad.mit.edu	37	chr8	19809302	19809302	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaggaatgtatgagagttGggtgccaaaacttgtggccg	14	6	0	1	rs118204070		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19809302	T	T	19809302	3	4	202	1	0	0	0	0	1	0	0	0	9008	1357	47	2	282	2	LPL	8	19809302	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08		19809302	126554720	139	159316											
EPB49	2039	broad.mit.edu	37	chr8	21925121	21925121	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctggacatcgagcggccCgacctcatgatctacgagcc	10	15	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21925121	A	A	21925121	2	1	202	1	0	0	0	0	0	0	0	1	5201	639	23	1		1	EPB49	8	21925121	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	2115819	21925121	124438901	140	159317											
NKX3-1	4824	broad.mit.edu	37	chr8	23538978	23538978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcttggccaggtgggccCgttcaggggccgacaggtac	17	11	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23538978	A	A	23538978	3	1	202	1	0	0	0	0	1	0	0	0	10550	652	23	1	247	1	NKX3-1	8	23538978	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1613857	23538978	122825044	141	159318											
CDCA2	157313	broad.mit.edu	37	chr8	25319624	25319624	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttctgcagtcggtgctcGgggctctcctgaaacaaacc	11	13	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25319624	T	T	25319624	3	4	202	1	0	0	0	0	1	0	0	0	3116	1116	39	1	297	1	CDCA2	8	25319624	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	1780646	25319624	121044398	142	159319											
GTF2E2	2961	broad.mit.edu	37	chr8	30464636	30464636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtattttcttcttatcgggaCgatttacaaatagtatctgg	8	6	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30464636	T	T	30464636	3	4	202	1	0	0	0	0	1	0	0	0	6922	536	19	4	306	4	GTF2E2	8	30464636	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	5145012	30464636	115899386	143	159320											
SNTG1	54212	broad.mit.edu	37	chr8	51675314	51675314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccatgatgtggcactggacAcacttctgaacaaagatctt	8	10	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51675314	T	T	51675314	1	4	202	0	1	0	0	0	0	0	0	0	14988	174	6	5		5	SNTG1	8	51675314	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	21210678	51675314	94688708	144	159321											
LYN	4067	broad.mit.edu	37	chr8	56910924	56910924	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgcagagggaatggcatAcatcgagcggaagaactaca	13	7	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56910924	G	G	56910924	3	3	202	1	0	0	0	0	1	0	0	0	9195	391	14	5	1108	5	LYN	8	56910924	Missense_Mutation	SNP	A	TCGA-71-6725-01A-11D-1855-08	5235610	56910924	89453098	145	159322											
HEY1	23462	broad.mit.edu	37	chr8	80678817	80678819	+	Intron	DEL	TCC	-	-													tcaggcagctactgcaccaaTcctggccttcagccgctgct							TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	80678819	-	-	80678817	6	5	202	0	1	1	0	1	0	0	0	0	7145	1450	50	0		0	HEY1	8	80678817	Intron	DEL	TCC	TCGA-71-6725-01A-11D-1855-08	23767893	80678817	65685205	146	159323											
CNBD1	168975	broad.mit.edu	37	chr8	88296878	88296878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgatgagtggtaataaaCattaaattgtctctggtatt	9	3	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88296878	A	A	88296878	1	1	202	0	1	0	0	0	0	0	0	0	3623	493	17	3		3	CNBD1	8	88296878	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	7618061	88296878	58067144	147	159324											
VPS13B	157680	broad.mit.edu	37	chr8	100866351	100866351	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagcatccacgcttccctCaagctgtacatagcctcaga	7	15	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100866351	T	T	100866351	2	4	202	1	0	0	0	0	0	0	0	1	17317	813	29	4		4	VPS13B	8	100866351	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	12569473	100866351	45497671	148	159325											
RGS22	26166	broad.mit.edu	37	chr8	101020467	101020467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacagatgggttttcaccaCgttagctaggctggtcttga	12	8	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101020467	T	T	101020467	1	4	202	0	1	0	0	0	0	0	0	0	13414	551	19	4		4	RGS22	8	101020467	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	154116	101020467	45343555	149	159326											
ST3GAL1	6482	broad.mit.edu	37	chr8	134474177	134474177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggtagatgggtatcgccCgtgcccttgcagccagttgt	14	12	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134474177	A	A	134474177	3	1	202	1	0	0	0	0	1	0	0	0	15332	652	23	1	240	1	ST3GAL1	8	134474177	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	33453710	134474177	11889845	150	159327											
ST3GAL1	6482	broad.mit.edu	37	chr8	134477245	134477245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttgtagcacgggcaccCgttctcagacagcctgagag	12	12	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134477245	A	A	134477245	1	1	202	0	1	0	0	0	0	0	0	0	15332	667	23	1		1	ST3GAL1	8	134477245	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	3068	134477245	11886777	151	159328											
CYP11B2	1585	broad.mit.edu	37	chr8	143997362	143997362	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcagaagatgcacatgcAcacgtgcgcccatgcaagac	11	13	0	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143997362	T	T	143997362	1	4	202	0	1	0	0	0	0	0	0	0	4179	174	6	5		5	CYP11B2	8	143997362	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	9520117	143997362	2366660	152	159329											
RFX3	5991	broad.mit.edu	37	chr9	3247924	3247924	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tccctcctggctctgaggctGacttggttaggaaccatggt	12	11	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3247924	A	A	3247924	1	1	202	0	1	0	0	0	0	0	0	0	13372	1277	45	4		4	RFX3	9	3247924	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08		3247924	137965507	153	159330											
KLHL9	55958	broad.mit.edu	37	chr9	21334730	21334730	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagcaatccttctattctAagctgatcaaagccttgcaa	5	11	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21334730	G	G	21334730	2	3	202	1	0	0	0	0	0	0	0	1	8467	349	13	5		5	KLHL9	9	21334730	Silent	SNP	A	TCGA-71-6725-01A-11D-1855-08	18086806	21334730	119878701	154	159331											
TMEM8B	51754	broad.mit.edu	37	chr9	35852958	35852958	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatggctcgtttacagccCgtggtcaagcaggtcagtcc	12	13	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35852958	A	A	35852958	2	1	202	1	0	0	0	0	0	0	0	1	16338	639	23	1		1	TMEM8B	9	35852958	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	14518228	35852958	105360473	155	159332											
FAM108B1	51104	broad.mit.edu	37	chr9	74485058	74485058	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggcaactcgcattccCgaagtcagaggagaatgaag	13	8	1	3	rs112750915	byFrequency	TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74485058	A	A	74485058	2	1	202	1	0	0	0	0	0	0	0	1	5438	639	23	1		1	FAM108B1	9	74485058	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	38632100	74485058	66728373	156	159333											
ASTN2	23245	broad.mit.edu	37	chr9	119249652	119249652	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttacttgtagagaccgtcGggctccagacacttgaagat	10	10	1	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119249652	T	T	119249652	2	4	202	1	0	0	0	0	0	0	0	1	1069	1103	39	1		1	ASTN2	9	119249652	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	44764594	119249652	21963779	157	159334											
GARNL3	84253	broad.mit.edu	37	chr9	130117712	130117712	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacctcattgttatctccCctgtctgagtcacctgttga	7	13	4	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130117712	A	A	130117712	2	1	202	1	0	0	0	0	0	0	0	1	6303	610	22	2		2	GARNL3	9	130117712	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	10868060	130117712	11095719	158	159335											
SH2D3C	10044	broad.mit.edu	37	chr9	130507043	130507043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgccccagtccccttcagGggccccattttctgacagtt	8	16	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130507043	T	T	130507043	3	4	202	1	0	0	0	0	1	0	0	0	14347	1232	43	2	1006	2	SH2D3C	9	130507043	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	389331	130507043	10706388	159	159336											
NUP188	23511	broad.mit.edu	37	chr9	131748908	131748908	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgaaggagatgcttccCagctaccataagtggcgcta	12	10	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131748908	A	A	131748908	2	1	202	1	0	0	0	0	0	0	0	1	10853	581	21	2		2	NUP188	9	131748908	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	1241865	131748908	9464523	160	159337											
UPF2	26019	broad.mit.edu	37	chr10	11985140	11985140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctcctcttcttctcCctcatcatcatcattatcag	1	17	9	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11985140	T	T	11985140	3	4	202	1	0	0	0	0	1	0	0	0	17130	632	22	4	640	4	UPF2	10	11985140	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08		11985140	123549607	161	159338											
CCDC3	83643	broad.mit.edu	37	chr10	12940576	12940576	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaccttcttcactcgctccCggagctgccggttgcgcttc	10	16	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12940576	A	A	12940576	3	1	202	1	0	0	0	0	1	0	0	0	2831	652	23	1	163	1	CCDC3	10	12940576	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	955436	12940576	122594171	162	159339											
CACNB2	783	broad.mit.edu	37	chr10	18550933	18550933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaccagctccgagcaagcGctggcttgattttcatactc	9	14	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18550933	A	A	18550933	1	1	202	0	1	0	0	0	0	0	0	0	2579	1102	38	4		4	CACNB2	10	18550933	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	5610357	18550933	116983814	163	159340											
ITGB1	3688	broad.mit.edu	37	chr10	33217260	33217260	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacgcaaacgagaaaaaccaAataaatgtggtttacacggt	8	7	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33217260	C	C	33217260	1	2	202	0	1	0	0	0	0	0	0	0	7960	29	1	5		5	ITGB1	10	33217260	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	14666327	33217260	102317487	164	159341											
FRMPD2	143162	broad.mit.edu	37	chr10	49482622	49482622	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcatccaaaagtctcCgtgaccaggtctaggccttc	10	13	2	1	rs148990235	by1000genomes	TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49482622	T	T	49482622	1	4	202	0	1	0	0	0	0	0	0	0	6118	667	23	4		4	FRMPD2	10	49482622	5'UTR	SNP	C	TCGA-71-6725-01A-11D-1855-08	16265362	49482622	86052125	165	159342											
AIFM2	84883	broad.mit.edu	37	chr10	71877715	71877715	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggcctgagaaggagcccCcaagtcttcaaacacaatca	9	13	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71877715	A	A	71877715	1	1	202	0	1	0	0	0	0	0	0	0	427	638	22	2		2	AIFM2	10	71877715	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	22395093	71877715	63657032	166	159343											
AGAP5	729092	broad.mit.edu	37	chr10	75457292	75457292	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacctatcacctccttaccTtcaggcatctcctggtcacg	6	17	4	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75457292	A	A	75457292	3	1	202	1	0	0	0	0	1	0	0	0	371	1623	56	5	1870	5	AGAP5	10	75457292	Missense_Mutation	SNP	T	TCGA-71-6725-01A-11D-1855-08	3579577	75457292	60077455	167	159344											
TLL2	7093	broad.mit.edu	37	chr10	98129994	98129994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcacagcgggcctcgctcGggtagttgttgtccccaaac	12	13	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98129994	T	T	98129994	3	4	202	1	0	0	0	0	1	0	0	0	16069	1116	39	1	314	1	TLL2	10	98129994	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	22672702	98129994	37404753	168	159345											
SLIT1	6585	broad.mit.edu	37	chr10	98924621	98924621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtcattcttatggatcCgagtgatgttgttgccattg	10	7	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98924621	A	A	98924621	3	1	202	1	0	0	0	0	1	0	0	0	14853	652	23	1	4524	1	SLIT1	10	98924621	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	794627	98924621	36610126	169	159346											
MGEA5	10724	broad.mit.edu	37	chr10	103559926	103559926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtgagccaccacacccGggagacagtgttctttactt	11	11	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103559926	T	T	103559926	1	4	202	0	1	0	0	0	0	0	0	0	9648	1131	39	1		1	MGEA5	10	103559926	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	4635305	103559926	31974821	170	159347											
RAB11FIP2	22841	broad.mit.edu	37	chr10	119768624	119768624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgtagtcctcgagttccCggatgtgggtgtctttcctc	12	11	1	0	rs142779822		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119768624	A	A	119768624	3	1	202	1	0	0	0	0	1	0	0	0	13002	652	23	1	118	1	RAB11FIP2	10	119768624	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	16208698	119768624	15766123	171	159348											
MKI67	4288	broad.mit.edu	37	chr10	129905598	129905598	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttggagcttgttggtgtGtccactgggtctggttgtga	17	6	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129905598	A	A	129905598	2	1	202	1	0	0	0	0	0	0	0	1	9691	1368	48	4		4	MKI67	10	129905598	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	10136974	129905598	5629149	172	159349											
EBF3	253738	broad.mit.edu	37	chr10	131640456	131640456	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgacgcccatcatgccCgtgtgtgcagggttgttgcc	14	11	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131640456	A	A	131640456	2	1	202	1	0	0	0	0	0	0	0	1	4922	639	23	1		1	EBF3	10	131640456	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	1734858	131640456	3894291	173	159350											
GPR123	84435	broad.mit.edu	37	chr10	134942303	134942303	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcatgctgcccgccccGcaaggacgcccaccccgcac	12	20	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134942303	A	A	134942303	3	1	202	1	0	0	0	0	1	0	0	0	6702	1087	38	4	993	4	GPR123	10	134942303	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	3301847	134942303	592444	174	159351											
SCUBE2	57758	broad.mit.edu	37	chr11	9077217	9077217	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatggactcaccgctattGctcagggactgcaatgtacc	10	11	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9077217	A	A	9077217	1	1	202	0	1	0	0	0	0	0	0	0	14058	1334	46	4		4	SCUBE2	11	9077217	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08		9077217	125929299	175	159352											
TRAF6	7189	broad.mit.edu	37	chr11	36511453	36511453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctacccatgtcaaagcGggtggagacctcacagcgca	12	12	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36511453	T	T	36511453	3	4	202	1	0	0	0	0	1	0	0	0	16569	1116	39	1	68	1	TRAF6	11	36511453	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	27434236	36511453	98495063	176	159353											
ARFGAP2	84364	broad.mit.edu	37	chr11	47196680	47196680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacacccctaaaacacaGggctctgaatactcctaacc	6	14	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47196680	T	T	47196680	1	4	202	0	1	0	0	0	0	0	0	0	852	1015	35	2		2	ARFGAP2	11	47196680	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	10685227	47196680	87809836	177	159354											
OR4X2	119764	broad.mit.edu	37	chr11	48266803	48266803	+	Missense_Mutation	SNP	C	A	A													ccagcagaagccttggttccCccatgtacttcttcctcagc							TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48266803	A	A	48266803	3	1	202	1	0	0	0	0	1	0	0	0	11179	623	22	2	150	2	OR4X2	11	48266803	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1070123	48266803	86739713	178	159355	678	2									
OR4X2	119764	broad.mit.edu	37	chr11	48266805	48266805	+	Silent	SNP	C	A	A													agcagaagccttggttccccCatgtacttcttcctcagcta							TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48266805	A	A	48266805	2	1	202	1	0	0	0	0	0	0	0	1	11179	581	21	2		2	OR4X2	11	48266805	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	2	48266805	86739711	179	159356	678	2									
OR4C16	219428	broad.mit.edu	37	chr11	55340039	55340039	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgttttgatggctgtgGcctgggtgggatcctgtgtg	19	5	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55340039	T	T	55340039	3	4	202	1	0	0	0	0	1	0	0	0	11143	1203	42	3	438	3	OR4C16	11	55340039	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	7073234	55340039	79666477	180	159357											
CTNND1	1500	broad.mit.edu	37	chr11	57564112	57564112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagctggcactgctaccCttcctaggaacttccactac	8	15	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57564112	A	A	57564112	3	1	202	1	0	0	0	0	1	0	0	0	4053	681	24	2	618	2	CTNND1	11	57564112	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	2224073	57564112	77442404	181	159358											
MS4A10	341116	broad.mit.edu	37	chr11	60567350	60567350	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacatggatagtcactgacGgagctgcgatctggacccag	12	11	2	1	rs151159886		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60567350	T	T	60567350	4	4	202	1	0	0	0	0	0	1	0	0	9949	1117	39	1	798	1	MS4A10	11	60567350	Nonsense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	3003238	60567350	74439166	182	159359											
AHNAK	79026	broad.mit.edu	37	chr11	62296883	62296883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagacacatccatatccCctttgactttggggcctttc	7	14	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62296883	A	A	62296883	3	1	202	1	0	0	0	0	1	0	0	0	414	623	22	2	12786	2	AHNAK	11	62296883	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1729533	62296883	72709633	183	159360											
GANAB	23193	broad.mit.edu	37	chr11	62397858	62397858	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtctgcttacctggccaGcaccagccctcatagtcaga	10	14	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62397858	A	A	62397858	2	1	202	1	0	0	0	0	0	0	0	1	6295	963	34	4		4	GANAB	11	62397858	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	100975	62397858	72608658	184	159361											
ATL3	25923	broad.mit.edu	37	chr11	63400254	63400254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgtgaatttattactccCattgaaactatgtacttacc	4	9	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63400254	A	A	63400254	1	1	202	0	1	0	0	0	0	0	0	0	1112	609	21	2		2	ATL3	11	63400254	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	1002396	63400254	71606262	185	159362											
MAP3K11	4296	broad.mit.edu	37	chr11	65374207	65374207	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggcgaatccccaggccCgacctcgaagacgtttctcc	12	15	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65374207	A	A	65374207	3	1	202	1	0	0	0	0	1	0	0	0	9337	652	23	1	1005	1	MAP3K11	11	65374207	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1973953	65374207	69632309	186	159363											
B3GNT1	11041	broad.mit.edu	37	chr11	66114295	66114295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctctgatccagcatttccCgcaggcctctccacagcccc	7	19	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66114295	A	A	66114295	3	1	202	1	0	0	0	0	1	0	0	0	1261	652	23	1	533	1	B3GNT1	11	66114295	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	740088	66114295	68892221	187	159364											
PDE2A	5138	broad.mit.edu	37	chr11	72293653	72293653	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagaagacagccttcacccCatctggtgtcttcaccctca	6	15	5	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72293653	A	A	72293653	1	1	202	0	1	0	0	0	0	0	0	0	11730	609	21	2		2	PDE2A	11	72293653	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	6179358	72293653	62712863	188	159365											
C11orf54	28970	broad.mit.edu	37	chr11	93490583	93490583	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaataagcctataggaatGggaggtactttcataattca	10	5	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93490583	T	T	93490583	3	4	202	1	0	0	0	0	1	0	0	0	1661	1363	47	2		2	C11orf54	11	93490583	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	21196930	93490583	41515933	189	159366											
PANX1	24145	broad.mit.edu	37	chr11	93913371	93913371	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgatggcaaaactccCatgtctgcagagatgagaga	12	7	1	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93913371	A	A	93913371	2	1	202	1	0	0	0	0	0	0	0	1	11514	581	21	2		2	PANX1	11	93913371	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	422788	93913371	41093145	190	159367											
BIRC3	330	broad.mit.edu	37	chr11	102198973	102198973	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgttttagaaatacattTtctttttcttatcaaacctg	4	6	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102198973	G	G	102198973	1	3	202	0	1	0	0	0	0	0	0	0	1442	1856	64	5		5	BIRC3	11	102198973	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	8285602	102198973	32807543	191	159368											
ATM	472	broad.mit.edu	37	chr11	108216783	108216783	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacccatcttcattattaaaTcatatgtttcttgttcatcc	2	10	5	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108216783	G	G	108216783	1	3	202	0	1	0	0	0	0	0	0	0	1113	1450	50	5		5	ATM	11	108216783	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	6017810	108216783	26789733	192	159369											
TTC12	54970	broad.mit.edu	37	chr11	113220973	113220973	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtgctgtattcagagAggctaggccaagtctccaag	11	8	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113220973	T	T	113220973	1	4	202	0	1	0	0	0	0	0	0	0	16805	319	11	5		5	TTC12	11	113220973	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	5004190	113220973	21785543	193	159370											
DSCAML1	57453	broad.mit.edu	37	chr11	117391953	117391953	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaggtgatgagcagcgtctCgttgctgagcccgcggatgg	17	10	1	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117391953	A	A	117391953	4	1	202	1	0	0	0	0	0	1	0	0	4809	893	31	3	5168	3	DSCAML1	11	117391953	Nonsense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	4170980	117391953	17614563	194	159371											
MLL	4297	broad.mit.edu	37	chr11	118361003	118361003	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgccagctttcggaggttGtacttggtgttctggaggtg	15	6	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118361003	A	A	118361003	1	1	202	0	1	0	0	0	0	0	0	0	9713	1392	48	4		4	MLL	11	118361003	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	969050	118361003	16645513	195	159372											
BCL9L	283149	broad.mit.edu	37	chr11	118770825	118770825	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggggaggaagtgaatggTaggctggggttcatgaggcc	19	5	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118770825	C	C	118770825	2	2	202	1	0	0	0	0	0	0	0	1	1387	1625	57	5		5	BCL9L	11	118770825	Silent	SNP	T	TCGA-71-6725-01A-11D-1855-08	409822	118770825	16235691	196	159373											
TRAPPC4	51399	broad.mit.edu	37	chr11	118889465	118889465	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttccggggaggggccgtcGggtagaggctgaataccagt	19	8	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118889465	T	T	118889465	1	4	202	0	1	0	0	0	0	0	0	0	16585	1131	39	1		1	TRAPPC4	11	118889465	5'UTR	SNP	G	TCGA-71-6725-01A-11D-1855-08	118640	118889465	16117051	197	159374											
HYOU1	10525	broad.mit.edu	37	chr11	118918523	118918523	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccatctctgggatgagccGggcccccctggaagccagaa	13	14	1	2	rs61902088		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118918523	T	T	118918523	2	4	202	1	0	0	0	0	0	0	0	1	7540	1115	39	1		1	HYOU1	11	118918523	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	29058	118918523	16087993	198	159375											
PVRL1	5818	broad.mit.edu	37	chr11	119535590	119535590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgtcctgacgggcctcgGcctcatccacggtgaagtag	13	14	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119535590	T	T	119535590	3	4	202	1	0	0	0	0	1	0	0	0	12947	1203	42	3	522	3	PVRL1	11	119535590	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	617067	119535590	15470926	199	159376											
UBASH3B	84959	broad.mit.edu	37	chr11	122653834	122653834	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaagccagccacctaccCaccctagagaaactggccca	6	18	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122653834	A	A	122653834	2	1	202	1	0	0	0	0	0	0	0	1	16966	581	21	2		2	UBASH3B	11	122653834	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	3118244	122653834	12352682	200	159377											
NFRKB	4798	broad.mit.edu	37	chr11	129744408	129744408	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacttaccaccttggatggGggcttgggtttttgctgaag	13	8	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129744408	T	T	129744408	2	4	202	1	0	0	0	0	0	0	0	1	10479	1219	43	2		2	NFRKB	11	129744408	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	7090574	129744408	5262108	201	159378											
SOX5	6660	broad.mit.edu	37	chr12	24365347	24365347	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtataatgaaaactgaaaaAgccactggtagttgttctac	8	6	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24365347	G	G	24365347	1	3	202	0	1	0	0	0	0	0	0	0	15068	87	3	5		5	SOX5	12	24365347	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08		24365347	109486548	202	159379											
RPAP3	79657	broad.mit.edu	37	chr12	48090212	48090212	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaaattatataaaatgatCttttttacaaattctgaaat	3	3	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48090212	T	T	48090212	1	4	202	0	1	0	0	0	0	0	0	0	13654	928	32	4		4	RPAP3	12	48090212	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	23724865	48090212	85761683	203	159380											
KRT73	319101	broad.mit.edu	37	chr12	53012005	53012005	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacctgatggataccccCgggcgggcacaacgacggac	15	13	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53012005	A	A	53012005	3	1	202	1	0	0	0	0	1	0	0	0	8557	652	23	1	1354	1	KRT73	12	53012005	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	4921793	53012005	80839890	204	159381											
USP15	9958	broad.mit.edu	37	chr12	62783310	62783310	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaggtaagatgtttctggGgttgaagtatataagttggt	13	1	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62783310	A	A	62783310	1	1	202	0	1	0	0	0	0	0	0	0	17172	1247	43	4		4	USP15	12	62783310	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	9771305	62783310	71068585	205	159382											
EEA1	8411	broad.mit.edu	37	chr12	93171702	93171702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaataaactaattttaCtagatatcaatcacctttcc	3	8	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93171702	A	A	93171702	1	1	202	0	1	0	0	0	0	0	0	0	4961	580	20	3		3	EEA1	12	93171702	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	30388392	93171702	40680193	206	159383											
RFX4	5992	broad.mit.edu	37	chr12	107126711	107126711	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctatccacagcagaagtccGagaagagatcatcttgacag	9	10	3	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107126711	T	T	107126711	3	4	202	1	0	0	0	0	1	0	0	0	13373	1058	37	3	1712	3	RFX4	12	107126711	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	13955009	107126711	26725184	207	159384											
ACACB	32	broad.mit.edu	37	chr12	109629404	109629404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggaaaatgatccatgtgCctttcccttcaaggaacatg	8	9	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109629404	A	A	109629404	1	1	202	0	1	0	0	0	0	0	0	0	107	754	26	3		3	ACACB	12	109629404	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	2502693	109629404	24222491	208	159385											
MED13L	23389	broad.mit.edu	37	chr12	116675499	116675499	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctacgccatttgattccCgtgagttcagcctggaaaaa	8	11	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116675499	A	A	116675499	2	1	202	1	0	0	0	0	0	0	0	1	9524	639	23	1		1	MED13L	12	116675499	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	7046095	116675499	17176396	209	159386											
WSB2	55884	broad.mit.edu	37	chr12	118474229	118474229	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaagcagggcagagtcGggggagaagtcacaagagac	17	7	1	4	rs147184268	byFrequency	TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118474229	T	T	118474229	2	4	202	1	0	0	0	0	0	0	0	1	17532	1103	39	1		1	WSB2	12	118474229	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	1798730	118474229	15377666	210	159387											
HIP1R	9026	broad.mit.edu	37	chr12	123342906	123342906	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcttgcagactacctggtGagcagggcccaggaggcctt	15	11	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123342906	T	T	123342906	2	4	202	1	0	0	0	0	0	0	0	1	7182	1277	45	3		3	HIP1R	12	123342906	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	4868677	123342906	10508989	211	159388											
FLT1	2321	broad.mit.edu	37	chr13	28964125	28964125	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttctgttattaactgtccGcagtaaaatccaagtaacgt	7	8	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28964125	A	A	28964125	3	1	202	1	0	0	0	0	1	0	0	0	5999	1086	38	4	2496	4	FLT1	13	28964125	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08		28964125	86205753	212	159389											
USPL1	10208	broad.mit.edu	37	chr13	31232183	31232183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacataagttttccatccCaagttgtaaatacaaacatg	6	8	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31232183	A	A	31232183	3	1	202	1	0	0	0	0	1	0	0	0	17219	595	21	2	1999	2	USPL1	13	31232183	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	2268058	31232183	83937695	213	159390											
ELF1	1997	broad.mit.edu	37	chr13	41515330	41515330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttgaagatactctcgacCggctggtttgattcctattt	9	9	1	3	rs140646954		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41515330	A	A	41515330	3	1	202	1	0	0	0	0	1	0	0	0	5095	652	23	1	884	1	ELF1	13	41515330	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	10283147	41515330	73654548	214	159391											
MYCBP2	23077	broad.mit.edu	37	chr13	77900737	77900737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtagtgaccccgggagtcCgcggcgggtagccccagccc	16	15	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77900737	A	A	77900737	2	1	202	1	0	0	0	0	0	0	0	1	10112	639	23	1		1	MYCBP2	13	77900737	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	36385407	77900737	37269141	215	159392											
COL4A2	1284	broad.mit.edu	37	chr13	111135123	111135123	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccatgcatccaggaaccCtaaagctagacaaaacaaac	5	13	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111135123	A	A	111135123	1	1	202	0	1	0	0	0	0	0	0	0	3722	696	24	2		2	COL4A2	13	111135123	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	33234386	111135123	4034755	216	159393											
HNRNPC	3183	broad.mit.edu	37	chr14	21679578	21679578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcacctggtcatcccccCgatcttcattatcatcatca	3	15	7	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21679578	A	A	21679578	3	1	202	1	0	0	0	0	1	0	0	0	7329	652	23	1	104	1	HNRNPC	14	21679578	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08		21679578	85669962	217	159394											
SUPT16H	11198	broad.mit.edu	37	chr14	21852129	21852129	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggttccgagaatcacgcgAggtcccggctcagccacccg	13	16	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21852129	C	C	21852129	1	2	202	0	1	0	0	0	0	0	0	0	15514	319	11	5		5	SUPT16H	14	21852129	5'UTR	SNP	A	TCGA-71-6725-01A-11D-1855-08	172551	21852129	85497411	218	159395											
MYH6	4624	broad.mit.edu	37	chr14	23870001	23870001	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagggtggcgttgatgcGcgtcaccatccagttgaaca	12	12	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23870001	A	A	23870001	3	1	202	1	0	0	0	0	1	0	0	0	10132	1087	38	4	4600	4	MYH6	14	23870001	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	2017872	23870001	83479539	219	159396											
CTSG	1511	broad.mit.edu	37	chr14	25044388	25044388	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccctttcattgctacaActcttctttcagatggctct	4	13	6	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25044388	G	G	25044388	1	3	202	0	1	0	0	0	0	0	0	0	4069	58	2	5		5	CTSG	14	25044388	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	1174387	25044388	82305152	220	159397											
AKAP6	9472	broad.mit.edu	37	chr14	33292074	33292074	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatcaatgaagactcagcGgcatctctaacagaacttag	7	10	4	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33292074	A	A	33292074	2	1	202	1	0	0	0	0	0	0	0	1	455	1103	39	4		4	AKAP6	14	33292074	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	8247686	33292074	74057466	221	159398											
NPAS3	64067	broad.mit.edu	37	chr14	34269478	34269478	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacggagatctcagaaccCatcaatttcgacaatgacag	8	10	2	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34269478	A	A	34269478	2	1	202	1	0	0	0	0	0	0	0	1	10659	581	21	2		2	NPAS3	14	34269478	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	977404	34269478	73080062	222	159399											
MAP4K5	11183	broad.mit.edu	37	chr14	50904625	50904625	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtaccttggtagtattcGgtctggaaacctgtgagttt	11	6	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50904625	T	T	50904625	2	4	202	1	0	0	0	0	0	0	0	1	9355	1124	39	1		1	MAP4K5	14	50904625	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	16635147	50904625	56444915	223	159400											
SOCS4	122809	broad.mit.edu	37	chr14	55510343	55510343	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcacataccaatgttcagcCctgtgtcataaccaccgaca	5	15	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55510343	T	T	55510343	3	4	202	1	0	0	0	0	1	0	0	0	15030	623	22	4	586	4	SOCS4	14	55510343	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	4605718	55510343	51839197	224	159401											
PSMA3	5684	broad.mit.edu	37	chr14	58727695	58727695	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtcttacagtgtgaatgAcggtgcgcaactctacatga	12	8	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58727695	G	G	58727695	3	3	202	1	0	0	0	0	1	0	0	0	12774	275	10	5	456	5	PSMA3	14	58727695	Missense_Mutation	SNP	A	TCGA-71-6725-01A-11D-1855-08	3217352	58727695	48621845	225	159402											
ZFYVE26	23503	broad.mit.edu	37	chr14	68248116	68248116	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagtccttcttggacagcCgtgtctgaaatgcagtaggc	11	9	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68248116	A	A	68248116	2	1	202	1	0	0	0	0	0	0	0	1	17794	639	23	1		1	ZFYVE26	14	68248116	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	9520421	68248116	39101424	226	159403											
LTBP2	4053	broad.mit.edu	37	chr14	75017917	75017917	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctggcaggcagccagggCgggggtctggtctccacgct	19	12	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75017917	T	T	75017917	2	4	202	1	0	0	0	0	0	0	0	1	9161	755	27	4		4	LTBP2	14	75017917	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	6769801	75017917	32331623	227	159404											
C14orf179	112752	broad.mit.edu	37	chr14	76524981	76524981	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcttttcttttttttttTcaggtttaggaggaaggctt	9	4	3	0	rs59989662		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76524981	C	C	76524981	1	2	202	0	1	0	0	0	0	0	0	0	1775	1798	62	5		5	C14orf179	14	76524981	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	1507064	76524981	30824559	228	159405											
SPTLC2	9517	broad.mit.edu	37	chr14	77978695	77978695	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaggtaccaaccgatgacGggaatacttcagctgcaata	10	9	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77978695	T	T	77978695	3	4	202	1	0	0	0	0	1	0	0	0	15242	1116	39	1	71	1	SPTLC2	14	77978695	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	1453714	77978695	29370845	229	159406											
DYNC1H1	1778	broad.mit.edu	37	chr14	102457986	102457986	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttgtactgtctctcccCaggatccagagtcagaggta	11	10	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102457986	A	A	102457986	2	1	202	1	0	0	0	0	0	0	0	1	4881	581	21	2		2	DYNC1H1	14	102457986	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	24479291	102457986	4891554	230	159407											
TECPR2	9895	broad.mit.edu	37	chr14	102904478	102904478	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctgcagcgcgttgccGggcgccgggctgcgctggca	17	14	1	0	rs140913653		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102904478	T	T	102904478	2	4	202	1	0	0	0	0	0	0	0	1	15866	1103	39	1		1	TECPR2	14	102904478	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	446492	102904478	4445062	231	159408											
SNRPN	6638	broad.mit.edu	37	chr15	25221477	25221477	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatgcgaagcaaccagagCgtgaagaaaagcgggttttg	14	6	0	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25221477	T	T	25221477	3	4	202	1	0	0	0	0	1	0	0	0	14984	768	27	4	191	4	SNRPN	15	25221477	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08		25221477	77309915	232	159409											
LPCAT4	254531	broad.mit.edu	37	chr15	34653557	34653557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaacatgtcagcctggaGggaagcctgggttctgctct	14	9	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34653557	T	T	34653557	1	4	202	0	1	0	0	0	0	0	0	0	9000	1015	35	2		2	LPCAT4	15	34653557	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	9432080	34653557	67877835	233	159410											
CAPN3	825	broad.mit.edu	37	chr15	42695961	42695961	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttgaaaataccatctccGtggatcggccagtggtgagt	12	8	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42695961	A	A	42695961	3	1	202	1	0	0	0	0	1	0	0	0	2654	1145	40	4	1874	4	CAPN3	15	42695961	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	8042404	42695961	59835431	234	159411											
STRC	161497	broad.mit.edu	37	chr15	43893702	43893702	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacctattaagagcctaccAagctgcaggatctgctcagg	10	11	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43893702	G	G	43893702	2	3	202	1	0	0	0	0	0	0	0	1	15446	117	5	5		5	STRC	15	43893702	Silent	SNP	A	TCGA-71-6725-01A-11D-1855-08	1197741	43893702	58637690	235	159412											
STRC	161497	broad.mit.edu	37	chr15	43893725	43893725	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcaggatctgctcaggacGaaatccccgggggggacccc	14	14	2	0	rs147990592		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43893725	C	C	43893725	3	2	202	1	0	0	0	0	1	0	0	0	15446	1058	37	4	781	4	STRC	15	43893725	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	23	43893725	58637667	236	159413											
DUOX2	50506	broad.mit.edu	37	chr15	45398803	45398803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttgtgttctcggcccCggaaataggccaccactcca	9	15	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45398803	A	A	45398803	3	1	202	1	0	0	0	0	1	0	0	0	4841	652	23	1	2854	1	DUOX2	15	45398803	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	1505078	45398803	57132589	237	159414											
DUOX1	53905	broad.mit.edu	37	chr15	45424180	45424180	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcatgggcttctgcctgGctctagcatggacacttctg	10	12	5	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45424180	A	A	45424180	3	1	202	1	0	0	0	0	1	0	0	0	4840	1203	42	4	18	4	DUOX1	15	45424180	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	25377	45424180	57107212	238	159415											
NARG2	79664	broad.mit.edu	37	chr15	60747458	60747458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggactttgggacaatcGggttagatatattttgtgag	14	3	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60747458	T	T	60747458	1	4	202	0	1	0	0	0	0	0	0	0	10263	1131	39	1		1	NARG2	15	60747458	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	15323278	60747458	41783934	239	159416											
CA12	771	broad.mit.edu	37	chr15	63618490	63618490	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctccggggacctcaagcGtgggcctcagtctccatctt	12	14	4	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63618490	A	A	63618490	2	1	202	1	0	0	0	0	0	0	0	1	2539	1136	40	4		4	CA12	15	63618490	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	2871032	63618490	38912902	240	159417											
DENND4A	10260	broad.mit.edu	37	chr15	66031003	66031003	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatagaaaacttgaaaatgTacaagaaatttgtagataca	6	3	0	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66031003	C	C	66031003	1	2	202	0	1	0	0	0	0	0	0	0	4473	1653	57	5		5	DENND4A	15	66031003	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	2412513	66031003	36500389	241	159418											
TTLL13	440307	broad.mit.edu	37	chr15	90794841	90794841	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtggtaagcacccagccCgtcgctcacactgtggtgca	12	13	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90794841	A	A	90794841	1	1	202	0	1	0	0	0	0	0	0	0	16852	667	23	1		1	TTLL13	15	90794841	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	24763838	90794841	11736551	242	159419											
BLM	641	broad.mit.edu	37	chr15	91294987	91294987	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcattagtggttaacaAatctatgtttatcaactgtt	6	6	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91294987	G	G	91294987	1	3	202	0	1	0	0	0	0	0	0	0	1451	29	1	5		5	BLM	15	91294987	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	500146	91294987	11236405	243	159420											
ITFG3	83986	broad.mit.edu	37	chr16	312533	312533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgctcaatgccaccaccCgcaggatgctttcccacagg	9	16	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	312533	A	A	312533	3	1	202	1	0	0	0	0	1	0	0	0	7941	652	23	1	974	1	ITFG3	16	312533	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08		312533	90042220	244	159421											
RGS11	8786	broad.mit.edu	37	chr16	323740	323740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgcctgcaggcggggcGgggcagggcggggcctcacc	22	13	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	323740	T	T	323740	1	4	202	0	1	0	0	0	0	0	0	0	13403	1131	39	1		1	RGS11	16	323740	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	11207	323740	90031013	245	159422											
LMF1	64788	broad.mit.edu	37	chr16	919873	919873	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatgcgcccgccagggacCgtcccccacctggaaggccg	12	19	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	919873	T	T	919873	1	4	202	0	1	0	0	0	0	0	0	0	8919	667	23	4		4	LMF1	16	919873	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	596133	919873	89434880	246	159423											
TPSD1	23430	broad.mit.edu	37	chr16	1306465	1306465	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcccccacacagggaagggCtggtcccaggcgtggggcgg	19	13	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1306465	G	G	1306465	1	3	202	0	1	0	0	0	0	0	0	0	16549	812	28	4		4	TPSD1	16	1306465	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	386592	1306465	89048288	247	159424											
TRAP1	10131	broad.mit.edu	37	chr16	3726116	3726116	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcccggttctaactccCgaagcttcggcgatttcaaa	8	12	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3726116	A	A	3726116	2	1	202	1	0	0	0	0	0	0	0	1	16579	639	23	1		1	TRAP1	16	3726116	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	2419651	3726116	86628637	248	159425											
MYH11	4629	broad.mit.edu	37	chr16	15814739	15814739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcattctgctcgtccCgggcttggagatccctttcg	9	15	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15814739	A	A	15814739	3	1	202	1	0	0	0	0	1	0	0	0	10125	652	23	1	1241	1	MYH11	16	15814739	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	12088623	15814739	74540014	249	159426											
ITGAX	3687	broad.mit.edu	37	chr16	31374271	31374271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagatcggctcctacttcGgggcctccctctgctccgtg	10	16	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31374271	T	T	31374271	3	4	202	1	0	0	0	0	1	0	0	0	7959	1116	39	1	1425	1	ITGAX	16	31374271	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	15559532	31374271	58980482	250	159427											
FTO	79068	broad.mit.edu	37	chr16	53967938	53967938	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaaaagagaggggctcccCgtggaacaaaggaatgaaat	13	6	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53967938	A	A	53967938	2	1	202	1	0	0	0	0	0	0	0	1	6146	639	23	1		1	FTO	16	53967938	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	22593667	53967938	36386815	251	159428											
GLG1	2734	broad.mit.edu	37	chr16	74516961	74516961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactgcagctctaagagacGgtgttcacagtcttctacca	8	11	4	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74516961	T	T	74516961	3	4	202	1	0	0	0	0	1	0	0	0	6500	1116	39	1	2054	1	GLG1	16	74516961	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	20549023	74516961	15837792	252	159429											
RAP1GAP2	23108	broad.mit.edu	37	chr17	2861199	2861199	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccctggacgggggtgcAgagaagagacaattgcatcc	16	9	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2861199	T	T	2861199	1	4	202	0	1	0	0	0	0	0	0	0	13146	203	7	5		5	RAP1GAP2	17	2861199	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08		2861199	78334011	253	159430											
C17orf87	388325	broad.mit.edu	37	chr17	5124652	5124652	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccatttcttgcctaagaGgggaaaagcatgttcattga	9	8	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5124652	T	T	5124652	1	4	202	0	1	0	0	0	0	0	0	0	1906	1015	35	2		2	C17orf87	17	5124652	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	2263453	5124652	76070558	254	159431											
PITPNM3	83394	broad.mit.edu	37	chr17	6364731	6364731	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaagatggccttctgccGcagcgggtcatgcaccagcc	13	14	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6364731	A	A	6364731	3	1	202	1	0	0	0	0	1	0	0	0	12047	1086	38	4	484	4	PITPNM3	17	6364731	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	1240079	6364731	74830479	255	159432											
MYH13	8735	broad.mit.edu	37	chr17	10216459	10216459	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggccccctctgctattgccAccctggagcccctacttggc	10	18	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10216459	T	T	10216459	1	4	202	0	1	0	0	0	0	0	0	0	10126	174	6	5		5	MYH13	17	10216459	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	3851728	10216459	70978751	256	159433											
MYH8	4626	broad.mit.edu	37	chr17	10322033	10322033	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcctggcgctttttgCctctgtaggcagccaccacc	11	16	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10322033	T	T	10322033	3	4	202	1	0	0	0	0	1	0	0	0	10135	739	26	4	5517	4	MYH8	17	10322033	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	105574	10322033	70873177	257	159434											
MYH2	4620	broad.mit.edu	37	chr17	10450946	10450946	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcagagtctggtaaacaGgaaagataaccgtttacatt	9	7	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10450946	A	A	10450946	1	1	202	0	1	0	0	0	0	0	0	0	10129	1015	35	4		4	MYH2	17	10450946	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	128913	10450946	70744264	258	159435											
DNAH9	1770	broad.mit.edu	37	chr17	11696840	11696840	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattctcttctcctcagtGgaatgtgtgaaatccacatg	9	10	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11696840	T	T	11696840	2	4	202	1	0	0	0	0	0	0	0	1	4648	1335	47	2		2	DNAH9	17	11696840	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	1245894	11696840	69498370	259	159436											
ZNF286A	57335	broad.mit.edu	37	chr17	15620341	15620341	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcagagaattcacactggaGagaaaccctatgagtgtaat	9	7	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15620341	C	C	15620341	3	2	202	1	0	0	0	0	1	0	0	0	17949	943	33	4	1321	4	ZNF286A	17	15620341	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	3923501	15620341	65574869	260	159437											
TOP3A	7156	broad.mit.edu	37	chr17	18215917	18215917	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtccaaaatctgtagcttGcattaccaacctagaaaagg	9	9	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18215917	C	C	18215917	1	2	202	0	1	0	0	0	0	0	0	0	16491	1334	46	4		4	TOP3A	17	18215917	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	2595576	18215917	62979293	261	159438											
SLC5A10	125206	broad.mit.edu	37	chr17	18923418	18923418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatcctgtctgggtcacccCcaccctgccatcccccaccc	6	22	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18923418	A	A	18923418	1	1	202	0	1	0	0	0	0	0	0	0	14776	638	22	2		2	SLC5A10	17	18923418	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	707501	18923418	62271792	262	159439											
SLC13A2	9058	broad.mit.edu	37	chr17	26817800	26817800	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcagccatgatggtgccCatcgcacatgccgtcctgga	10	15	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26817800	A	A	26817800	2	1	202	1	0	0	0	0	0	0	0	1	14505	581	21	2		2	SLC13A2	17	26817800	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	7894382	26817800	54377410	263	159440											
SUPT6H	6830	broad.mit.edu	37	chr17	27009921	27009921	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggggcctgaggaccaCaacaccctggtcctgtagct	14	12	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27009921	T	T	27009921	1	4	202	0	1	0	0	0	0	0	0	0	15518	493	17	4		4	SUPT6H	17	27009921	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	192121	27009921	54185289	264	159441											
GOSR2	9570	broad.mit.edu	37	chr17	45095157	45095157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcctgcctccagaactccGggtgaagtcagatgagcctc	11	13	1	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45095157	A	A	45095157	1	1	202	0	1	0	0	0	0	0	0	0	6642	1131	39	4		4	GOSR2	17	45095157	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	18085236	45095157	36100053	265	159442											
TAC4	255061	broad.mit.edu	37	chr17	47921472	47921472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaactggcttgccttgccCgtcttcacctcctgcagctg	9	15	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47921472	A	A	47921472	2	1	202	1	0	0	0	0	0	0	0	1	15619	639	23	1		1	TAC4	17	47921472	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	2826315	47921472	33273738	266	159443											
CACNA1G	8913	broad.mit.edu	37	chr17	48639072	48639072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtaacccatatccttcGgggcacgacggccaggcgcg	13	14	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48639072	T	T	48639072	1	4	202	0	1	0	0	0	0	0	0	0	2570	1131	39	1		1	CACNA1G	17	48639072	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	717600	48639072	32556138	267	159444											
CACNA1G	8913	broad.mit.edu	37	chr17	48696099	48696099	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgtccttcgtgctgacGgcccagttcgtgctagtcaa	11	11	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48696099	A	A	48696099	2	1	202	1	0	0	0	0	0	0	0	1	2570	1103	39	4		4	CACNA1G	17	48696099	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	57027	48696099	32499111	268	159445											
ABCC3	8714	broad.mit.edu	37	chr17	48755174	48755174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctcacctatctactccCacttttcggagacagtgact	7	15	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48755174	A	A	48755174	3	1	202	1	0	0	0	0	1	0	0	0	54	594	21	2	3626	2	ABCC3	17	48755174	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	59075	48755174	32440036	269	159446											
CA10	56934	broad.mit.edu	37	chr17	50212286	50212286	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcatcaggctctgtgaatCcacatcctgaacggctcctg	9	13	3	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50212286	A	A	50212286	1	1	202	0	1	0	0	0	0	0	0	0	2537	870	30	3		3	CA10	17	50212286	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	1457112	50212286	30982924	270	159447											
TOM1L1	10040	broad.mit.edu	37	chr17	53037827	53037827	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatatgtagcctgaactccAaaaccagctcaatttttaat	4	10	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53037827	G	G	53037827	1	3	202	0	1	0	0	0	0	0	0	0	16475	145	5	5		5	TOM1L1	17	53037827	Intron	SNP	A	TCGA-71-6725-01A-11D-1855-08	2825541	53037827	28157383	271	159448											
DDX5	1655	broad.mit.edu	37	chr17	62496389	62496389	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatccaccccttttgccCgcagagtatctgtcccgacg	7	15	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62496389	A	A	62496389	2	1	202	1	0	0	0	0	0	0	0	1	4400	639	23	1		1	DDX5	17	62496389	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	9458562	62496389	18698821	272	159449											
ABCA9	10350	broad.mit.edu	37	chr17	67014737	67014737	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatctatgcagaggaaaatGtaaaagaaaaaaataatttt	6	2	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67014737	C	C	67014737	1	2	202	0	1	0	0	0	0	0	0	0	39	1392	48	4		4	ABCA9	17	67014737	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	4518348	67014737	14180473	273	159450											
RAB37	326624	broad.mit.edu	37	chr17	72667868	72667868	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggagttttctccactcccCtgactttgctttgggactta	8	12	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72667868	G	G	72667868	1	3	202	0	1	0	0	0	0	0	0	0	13035	696	24	4		4	RAB37	17	72667868	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	5653131	72667868	8527342	274	159451											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74625694	74625694	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttctctggcactggctcTgcatagatggttgtcctcct	10	11	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74625694	A	A	74625694	2	1	202	1	0	0	0	0	0	0	0	1	15341	1567	55	5		5	ST6GALNAC1	17	74625694	Silent	SNP	T	TCGA-71-6725-01A-11D-1855-08	1957826	74625694	6569516	275	159452											
NOTUM	147111	broad.mit.edu	37	chr17	79910771	79910771	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggcctgctggtggggggTgaggtggcactggggcagcg	24	7	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79910771	G	G	79910771	1	3	202	0	1	0	0	0	0	0	0	0	10647	1711	59	5		5	NOTUM	17	79910771	3'UTR	SNP	T	TCGA-71-6725-01A-11D-1855-08	5285077	79910771	1284439	276	159453											
THOC1	9984	broad.mit.edu	37	chr18	226842	226842	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagatattggaataaaatGagatactgcaacaggatgtg	11	3	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226842	T	T	226842	2	4	202	1	0	0	0	0	0	0	0	1	15987	1277	45	3		3	THOC1	18	226842	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08		226842	77850406	277	159454											
CTAGE1	64693	broad.mit.edu	37	chr18	19996170	19996170	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttggtaatctgatggtcCggaggattccctgggcctct	12	10	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19996170	T	T	19996170	2	4	202	1	0	0	0	0	0	0	0	1	4026	639	23	4		4	CTAGE1	18	19996170	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	19769328	19996170	58081078	278	159455											
OSBPL1A	114876	broad.mit.edu	37	chr18	21743135	21743135	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagccaaacaccctgacttgTatgcattttaataaatgtca	5	9	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21743135	C	C	21743135	1	2	202	0	1	0	0	0	0	0	0	0	11371	1653	57	5		5	OSBPL1A	18	21743135	3'UTR	SNP	T	TCGA-71-6725-01A-11D-1855-08	1746965	21743135	56334113	279	159456											
DSG1	1828	broad.mit.edu	37	chr18	28934607	28934607	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagagcacctatccctcGggacctggtgtactgcatcc	10	14	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28934607	T	T	28934607	2	4	202	1	0	0	0	0	0	0	0	1	4816	1103	39	1		1	DSG1	18	28934607	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	7191472	28934607	49142641	280	159457											
MYO5B	4645	broad.mit.edu	37	chr18	47402133	47402133	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcctgctccagctccCgtactctcttctgcagcttc	5	19	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47402133	A	A	47402133	3	1	202	1	0	0	0	0	1	0	0	0	10173	652	23	1	2145	1	MYO5B	18	47402133	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	18467526	47402133	30675115	281	159458											
CDH7	1005	broad.mit.edu	37	chr18	63548007	63548007	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctcagttgctgaatcactCagctctttagattccatcag	8	11	5	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63548007	A	A	63548007	2	1	202	1	0	0	0	0	0	0	0	1	3145	813	29	3		3	CDH7	18	63548007	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	16145874	63548007	14529241	282	159459											
C18orf22	79863	broad.mit.edu	37	chr18	77804248	77804248	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcgcagactttggacccCgggatgaaagagacaacttt	11	10	0	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77804248	A	A	77804248	2	1	202	1	0	0	0	0	0	0	0	1	1916	643	23	1		1	C18orf22	18	77804248	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	14256241	77804248	273000	283	159460											
C19orf6	91304	broad.mit.edu	37	chr19	1013256	1013256	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctttggtgggcgtctcGgggaaggggaactcctggct	16	10	1	0	rs142622215		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1013256	T	T	1013256	2	4	202	1	0	0	0	0	0	0	0	1	1960	1103	39	1		1	C19orf6	19	1013256	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08		1013256	58115727	284	159461											
LONP1	9361	broad.mit.edu	37	chr19	5699098	5699098	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctgaagcggaagtactctCggttcagggcgcgggcgatg	17	10	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5699098	A	A	5699098	3	1	202	1	0	0	0	0	1	0	0	0	8979	884	31	3	1290	3	LONP1	19	5699098	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	4685842	5699098	53429885	285	159462											
C3	718	broad.mit.edu	37	chr19	6686321	6686321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagaagataccccatccCcagtgctcactgctctgtcc	7	16	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6686321	A	A	6686321	1	1	202	0	1	0	0	0	0	0	0	0	2226	638	22	2		2	C3	19	6686321	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	987223	6686321	52442662	286	159463											
ARHGEF18	23370	broad.mit.edu	37	chr19	7506665	7506665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaaggtatggtcatctcCgctctctcgcggctgccaca	11	13	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7506665	A	A	7506665	1	1	202	0	1	0	0	0	0	0	0	0	903	667	23	1		1	ARHGEF18	19	7506665	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	820344	7506665	51622318	287	159464											
HNRNPM	4670	broad.mit.edu	37	chr19	8528411	8528411	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtatcgtctagttacttaTtggtatttgagccttctaac	7	7	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8528411	C	C	8528411	1	2	202	0	1	0	0	0	0	0	0	0	7338	1508	52	5		5	HNRNPM	19	8528411	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	1021746	8528411	50600572	288	159465											
LSM4	25804	broad.mit.edu	37	chr19	18423392	18423392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccccctgcatcccaccccCgttggtgggtgcagcaccca	9	20	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18423392	A	A	18423392	1	1	202	0	1	0	0	0	0	0	0	0	9145	667	23	1		1	LSM4	19	18423392	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	9894981	18423392	40705591	289	159466											
ZNF506	440515	broad.mit.edu	37	chr19	19905881	19905881	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattttcttatgtgaaaaaAgggttgcagggtggttaaaa	12	2	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19905881	G	G	19905881	3	3	202	1	0	0	0	0	1	0	0	0	18079	72	3	5	523	5	ZNF506	19	19905881	Missense_Mutation	SNP	A	TCGA-71-6725-01A-11D-1855-08	1482489	19905881	39223102	290	159467											
ZNF208	7757	broad.mit.edu	37	chr19	22154452	22154452	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaattaccttatgtttagtAaggattgagaacgtactaaa	8	4	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22154452	G	G	22154452	2	3	202	1	0	0	0	0	0	0	0	1	17892	349	13	5		5	ZNF208	19	22154452	Silent	SNP	A	TCGA-71-6725-01A-11D-1855-08	2248571	22154452	36974531	291	159468											
GRAMD1A	57655	broad.mit.edu	37	chr19	35514084	35514084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaagatgtagttgtttgGgggtgttcagagcatctaga	13	5	2	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35514084	T	T	35514084	1	4	202	0	1	0	0	0	0	0	0	0	6813	1247	43	2		2	GRAMD1A	19	35514084	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	13359632	35514084	23614899	292	159469											
HPN	3249	broad.mit.edu	37	chr19	35556224	35556224	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagatctgtaccgtgacGggctggggcaacacgcagta	15	10	1	2	rs139123237		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35556224	T	T	35556224	2	4	202	1	0	0	0	0	0	0	0	1	7403	1103	39	1		1	HPN	19	35556224	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	42140	35556224	23572759	293	159470											
NPHS1	4868	broad.mit.edu	37	chr19	36334888	36334888	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggctgggacttccagaacGggagggttccaggatgggtg	19	8	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36334888	A	A	36334888	1	1	202	0	1	0	0	0	0	0	0	0	10677	1131	39	4		4	NPHS1	19	36334888	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	778664	36334888	22794095	294	159471											
CLIP3	25999	broad.mit.edu	37	chr19	36508596	36508596	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgaagaccccatgcctcGgggggcaagtgaagtaccgg	16	11	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36508596	T	T	36508596	3	4	202	1	0	0	0	0	1	0	0	0	3566	1116	39	1	247	1	CLIP3	19	36508596	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	173708	36508596	22620387	295	159472											
RASGRP4	115727	broad.mit.edu	37	chr19	38900650	38900650	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggactgactgggggaaggGagtgaggaagagaggagacc	20	5	0	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38900650	A	A	38900650	1	1	202	0	1	0	0	0	0	0	0	0	13185	1189	41	4		4	RASGRP4	19	38900650	3'UTR	SNP	G	TCGA-71-6725-01A-11D-1855-08	2392054	38900650	20228333	296	159473											
PSG6	5675	broad.mit.edu	37	chr19	43520255	43520255	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctttgattcctccacaggCatccttcaatcagagttggc	7	13	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520255	T	T	43520255	1	4	202	0	1	0	0	0	0	0	0	0	12765	725	25	4		4	PSG6	19	43520255	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	4619605	43520255	15608728	297	159474											
ERCC2	2068	broad.mit.edu	37	chr19	45854879	45854879	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaccgtttatggccccaccCgccccactcagagctgctga	9	17	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45854879	A	A	45854879	1	1	202	0	1	0	0	0	0	0	0	0	5255	667	23	1		1	ERCC2	19	45854879	3'UTR	SNP	C	TCGA-71-6725-01A-11D-1855-08	2334624	45854879	13274104	298	159475											
GIPR	2696	broad.mit.edu	37	chr19	46180333	46180333	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgggaggctccgaggagGgccacttccgctactacctg	14	13	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46180333	T	T	46180333	3	4	202	1	0	0	0	0	1	0	0	0	6459	1232	43	2	786	2	GIPR	19	46180333	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	325454	46180333	12948650	299	159476											
PNKP	11284	broad.mit.edu	37	chr19	50367639	50367639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtggtgatgagcgtccCgtccagatcaaagccagcca	13	12	1	3	rs142770020		TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50367639	A	A	50367639	3	1	202	1	0	0	0	0	1	0	0	0	12242	652	23	1	1097	1	PNKP	19	50367639	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	4187306	50367639	8761344	300	159477											
KLK3	354	broad.mit.edu	37	chr19	51361824	51361824	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgctgtgtgctggacgCtggacagggggcaaaagcac	15	9	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51361824	T	T	51361824	2	4	202	1	0	0	0	0	0	0	0	1	8476	784	28	4		4	KLK3	19	51361824	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	994185	51361824	7767159	301	159478											
FAM110A	83541	broad.mit.edu	37	chr20	820189	820189	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttcttgtcagcaccaggGggcacagaacaccgtctgta	11	12	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	820189	T	T	820189	1	4	202	0	1	0	0	0	0	0	0	0	5442	1247	43	2		2	FAM110A	20	820189	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08		820189	62205331	302	159479											
CDS2	8760	broad.mit.edu	37	chr20	5169843	5169843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatcaaagtaggaaaacCgtcttacgttcctctcatct	5	10	4	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5169843	A	A	5169843	1	1	202	0	1	0	0	0	0	0	0	0	3208	667	23	1		1	CDS2	20	5169843	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	4349654	5169843	57855677	303	159480											
COMMD7	149951	broad.mit.edu	37	chr20	31292314	31292314	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgacaaaaaaaaaaaaaaaGagagagagagagagaaataa	10	1	0	5			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31292314	A	A	31292314	1	1	202	0	1	0	0	0	0	0	0	0	3753	957	33	4		4	COMMD7	20	31292314	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	26122471	31292314	31733206	304	159481											
FAM83C	128876	broad.mit.edu	37	chr20	33876276	33876276	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcacctgtaactgcccGccaccacttgctcacagtca	6	18	3	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33876276	A	A	33876276	3	1	202	1	0	0	0	0	1	0	0	0	5688	1087	38	4	1457	4	FAM83C	20	33876276	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	2583962	33876276	29149244	305	159482											
BLCAP	10904	broad.mit.edu	37	chr20	36147457	36147457	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcacaaattgtgcaaggcttCcgttccaggaggaagctgag	13	9	0	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36147457	T	T	36147457	2	4	202	1	0	0	0	0	0	0	0	1	1448	842	30	4		4	BLCAP	20	36147457	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	2271181	36147457	26878063	306	159483											
WFDC3	140686	broad.mit.edu	37	chr20	44416347	44416347	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatggcttgtgcaccctttGtatatcttttttttttaagg	7	6	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44416347	T	T	44416347	1	4	202	0	1	0	0	0	0	0	0	0	17480	1392	48	3		3	WFDC3	20	44416347	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	8268890	44416347	18609173	307	159484											
BCAS1	8537	broad.mit.edu	37	chr20	52609134	52609134	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgcctctagcctggatctCggatgtcttctgaccagctt	11	12	4	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52609134	T	T	52609134	1	4	202	0	1	0	0	0	0	0	0	0	1355	899	31	4		4	BCAS1	20	52609134	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	8192787	52609134	10416386	308	159485											
BCAS1	8537	broad.mit.edu	37	chr20	52675164	52675164	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttttttctgctgatgccCctgtaatggttactacacta	6	9	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52675164	A	A	52675164	1	1	202	0	1	0	0	0	0	0	0	0	1355	638	22	2		2	BCAS1	20	52675164	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	66030	52675164	10350356	309	159486											
DIDO1	11083	broad.mit.edu	37	chr20	61513659	61513659	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttcttccggttgaagtcGggtccgcttttcgtccatct	10	13	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61513659	T	T	61513659	2	4	202	1	0	0	0	0	0	0	0	1	4562	1124	39	1		1	DIDO1	20	61513659	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	8838495	61513659	1511861	310	159487											
TPTE	7179	broad.mit.edu	37	chr21	10916308	10916308	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatacaactatgagcaaaacCctcccagagtggggacattg	9	10	0	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10916308	T	T	10916308	1	4	202	0	1	0	0	0	0	0	0	0	16554	638	22	4		4	TPTE	21	10916308	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08		10916308	37213587	311	159488											
RWDD2B	10069	broad.mit.edu	37	chr21	30378734	30378734	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agatactttcaactactcttGatgtcattgtccttctacac	4	11	4	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30378734	T	T	30378734	1	4	202	0	1	0	0	0	0	0	0	0	13867	1305	45	3		3	RWDD2B	21	30378734	3'UTR	SNP	G	TCGA-71-6725-01A-11D-1855-08	19462426	30378734	17751161	312	159489											
GCFC1	94104	broad.mit.edu	37	chr21	34117807	34117807	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctataaggaaacatgctCtgaattataaactcataaaa	4	6	3	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34117807	G	G	34117807	1	3	202	0	1	0	0	0	0	0	0	0	6351	928	32	4		4	GCFC1	21	34117807	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	3739073	34117807	14012088	313	159490											
AGPAT3	56894	broad.mit.edu	37	chr21	45389105	45389105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaagtgggaggaggaccGggacaccgtggtcgaagggc	21	8	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45389105	T	T	45389105	3	4	202	1	0	0	0	0	1	0	0	0	388	1116	39	1	465	1	AGPAT3	21	45389105	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	11271298	45389105	2740790	314	159491											
DGCR14	8220	broad.mit.edu	37	chr22	19129930	19129930	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcacaggctgctatttacGcaagacccctcaggaacaag	8	13	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19129930	A	A	19129930	1	1	202	0	1	0	0	0	0	0	0	0	4500	1102	38	4		4	DGCR14	22	19129930	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08		19129930	32174636	315	159492											
SGSM1	129049	broad.mit.edu	37	chr22	25264737	25264737	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagccctcagggttctgcCgagtccacatcttcagacaa	9	14	4	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25264737	A	A	25264737	2	1	202	1	0	0	0	0	0	0	0	1	14335	639	23	1		1	SGSM1	22	25264737	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	6134807	25264737	26039829	316	159493											
RFPL1	5988	broad.mit.edu	37	chr22	29837625	29837625	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcatcacacagaatcgGcaagaccttgccgagagatt	12	10	1	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29837625	A	A	29837625	2	1	202	1	0	0	0	0	0	0	0	1	13361	1190	42	4		4	RFPL1	22	29837625	Silent	SNP	G	TCGA-71-6725-01A-11D-1855-08	4572888	29837625	21466941	317	159494											
TMPRSS6	164656	broad.mit.edu	37	chr22	37499438	37499438	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcccgccagccacctggGgggcctcggccacgggcatc	14	19	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37499438	A	A	37499438	3	1	202	1	0	0	0	0	1	0	0	0	16374	1232	43	4	2456	4	TMPRSS6	22	37499438	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08	7661813	37499438	13805128	318	159495											
PMM1	5372	broad.mit.edu	37	chr22	41985702	41985702	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacactcccggtgggagcTtccaatcttcagggtcctac	11	13	2	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41985702	G	G	41985702	1	3	202	0	1	0	0	0	0	0	0	0	12231	1624	56	5		5	PMM1	22	41985702	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	4486264	41985702	9318864	319	159496											
NAGA	4668	broad.mit.edu	37	chr22	42456900	42456900	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaatctgaagcccaggcGggtggctgcaggcagccggg	17	11	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42456900	T	T	42456900	1	4	202	0	1	0	0	0	0	0	0	0	10235	1131	39	1		1	NAGA	22	42456900	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	471198	42456900	8847666	320	159497											
TCF20	6942	broad.mit.edu	37	chr22	42609172	42609172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcgtggcacggctgaccCgaaactatctttgtaactat	8	10	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42609172	A	A	42609172	3	1	202	1	0	0	0	0	1	0	0	0	15812	652	23	1	3780	1	TCF20	22	42609172	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	152272	42609172	8695394	321	159498											
FBLN1	2192	broad.mit.edu	37	chr22	45970358	45970358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgctgtcccagcttcCccgtcagcctcgtgtgctgt	12	15	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45970358	A	A	45970358	1	1	202	0	1	0	0	0	0	0	0	0	5755	638	22	2		2	FBLN1	22	45970358	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	3361186	45970358	5334208	322	159499											
SAPS2	9701	broad.mit.edu	37	chr22	50861867	50861867	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctcacagggcctaactGggtggtgccttctgtgtttg	13	10	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50861867	T	T	50861867	1	4	202	0	1	0	0	0	0	0	0	0	13949	1363	47	2		2	SAPS2	22	50861867	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	4891509	50861867	442699	323	159500											
P2RY8	286530	broad.mit.edu	37	chrX	1585336	1585336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagagaagaggttgcccGggatgctgaccgccgccacc	14	13	0	4			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1585336	T	T	1585336	3	4	202	1	0	0	0	0	1	0	0	0	11449	1116	39	1	967	1	P2RY8	23	1585336	Missense_Mutation	SNP	G	TCGA-71-6725-01A-11D-1855-08		1585336	153685224	324	159501											
OTUD5	55593	broad.mit.edu	37	chrX	48791832	48791832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatattccgatggtagctaaCacgaatgggttcgtcctcgt	11	9	0	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48791832	A	A	48791832	3	1	202	1	0	0	0	0	1	0	0	0	11409	478	17	3	756	3	OTUD5	23	48791832	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	47206496	48791832	106478728	325	159502											
TAF1	6872	broad.mit.edu	37	chrX	70613945	70613945	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaactgaagtcttatcaActgacacagacagcagctca	6	12	4	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70613945	G	G	70613945	3	3	202	1	0	0	0	0	1	0	0	0	15632	43	2	5	3402	5	TAF1	23	70613945	Missense_Mutation	SNP	A	TCGA-71-6725-01A-11D-1855-08	21822113	70613945	84656615	326	159503											
POF1B	79983	broad.mit.edu	37	chrX	84634283	84634283	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggcctgcaccaccttgttCatgggcccactgtaggtcct	10	14	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84634283	T	T	84634283	3	4	202	1	0	0	0	0	1	0	0	0	12277	826	29	4	1656	4	POF1B	23	84634283	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	14020338	84634283	70636277	327	159504											
KLHL4	56062	broad.mit.edu	37	chrX	86887187	86887187	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatagaagtagattttaccGttgttcaatatccctttgtc	6	8	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86887187	A	A	86887187	1	1	202	0	1	0	0	0	0	0	0	0	8462	1160	40	4		4	KLHL4	23	86887187	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	2252904	86887187	68383373	328	159505											
COL4A5	1287	broad.mit.edu	37	chrX	107924027	107924027	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctttatattaaactcctcTgggacaagatagccattttc	5	11	1	1			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107924027	C	C	107924027	1	2	202	0	1	0	0	0	0	0	0	0	3726	1595	55	5		5	COL4A5	23	107924027	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	21036840	107924027	47346533	329	159506											
DOCK11	139818	broad.mit.edu	37	chrX	117816923	117816923	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaatgcacagtgagaaaaTagaggattctgatcttcttc	8	6	3	3			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117816923	C	C	117816923	1	2	202	0	1	0	0	0	0	0	0	0	4726	1421	49	5		5	DOCK11	23	117816923	Intron	SNP	T	TCGA-71-6725-01A-11D-1855-08	9892896	117816923	37453637	330	159507											
ENOX2	10495	broad.mit.edu	37	chrX	129770991	129770991	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatatttttcactgaatgctCattctttgaaagttggcaat	6	6	3	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129770991	A	A	129770991	1	1	202	0	1	0	0	0	0	0	0	0	5169	841	29	3		3	ENOX2	23	129770991	Intron	SNP	C	TCGA-71-6725-01A-11D-1855-08	11954068	129770991	25499569	331	159508											
GPC4	2239	broad.mit.edu	37	chrX	132439841	132439841	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agctgctgtggttgggcgttCctcggggtgatgtggtctga	18	7	1	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132439841	T	T	132439841	3	4	202	1	0	0	0	0	1	0	0	0	6665	864	30	4	572	4	GPC4	23	132439841	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	2668850	132439841	22830719	332	159509											
GPC4	2239	broad.mit.edu	37	chrX	132439994	132439994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaagtcactcccaaggcGggaggcggaggcgggggagg	22	8	1	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132439994	T	T	132439994	1	4	202	0	1	0	0	0	0	0	0	0	6665	1131	39	1		1	GPC4	23	132439994	Intron	SNP	G	TCGA-71-6725-01A-11D-1855-08	153	132439994	22830566	333	159510											
DUSP9	1852	broad.mit.edu	37	chrX	152914962	152914962	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctatctgggcagtgccCgggattccgccaatttggag	12	12	2	0			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152914962	A	A	152914962	2	1	202	1	0	0	0	0	0	0	0	1	4872	643	23	1		1	DUSP9	23	152914962	Silent	SNP	C	TCGA-71-6725-01A-11D-1855-08	20474968	152914962	2355598	334	159511											
NAA10	8260	broad.mit.edu	37	chrX	153196241	153196241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggccatctgagtgaggtccCgcttcatggcataggcgtcc	13	13	2	2			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153196241	A	A	153196241	3	1	202	1	0	0	0	0	1	0	0	0	10210	652	23	1	269	1	NAA10	23	153196241	Missense_Mutation	SNP	C	TCGA-71-6725-01A-11D-1855-08	281279	153196241	2074319	335	159512											
PRDM16	63976	broad.mit.edu	37	chr1	3328444	3328444	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctgcccctggtctccgcCgtcagcaacagcagccaggg	12	18	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3328444	T	T	3328444	2	4	203	1	0	0	0	0	0	0	0	1	12563	639	23	4		4	PRDM16	1	3328444	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08		3328444	245922177	1	159513											
NOL9	79707	broad.mit.edu	37	chr1	6585821	6585821	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctaataagggcaccattCatggccatgaaactccatca	7	11	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6585821	T	T	6585821	1	4	203	0	1	0	0	0	0	0	0	0	10623	841	29	4		4	NOL9	1	6585821	3'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	3257377	6585821	242664800	2	159514			1	124		3	3	159	C		4.821769e-06
NOL9	79707	broad.mit.edu	37	chr1	6585920	6585920	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaaacgcgagcatcacttCatttttcgacagaacttagg	7	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6585920	T	T	6585920	3	4	203	1	0	0	0	0	1	0	0	0	10623	826	29	4	9	4	NOL9	1	6585920	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	99	6585920	242664701	3	159515			1	124		3	3	159	C		4.821769e-06
NOL9	79707	broad.mit.edu	37	chr1	6585979	6585979	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatgtgcctcctcaggttCtcttgctccaattttctctg	6	12	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6585979	T	T	6585979	3	4	203	1	0	0	0	0	1	0	0	0	10623	922	32	4	68	4	NOL9	1	6585979	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	59	6585979	242664642	4	159516			1	124		3	3	159	C		4.821769e-06
DFFA	1676	broad.mit.edu	37	chr1	10527261	10527261	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttacctggaggtcctcctCtgataggaggatgatgctgg	13	9	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10527261	G	G	10527261	3	3	203	1	0	0	0	0	1	0	0	0	4492	922	32	4	608	4	DFFA	1	10527261	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3941282	10527261	238723360	5	159517											
DFFA	1676	broad.mit.edu	37	chr1	10527291	10527291	+	Frame_Shift_Del	DEL	C	-	-													gatgatgctggacagatcttCtttcagctgcctggccacat							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10527291	-	-	10527291	7	5	203	1	0	1	0	1	0	0	0	0	4492	922	32	0	638	0	DFFA	1	10527291	Frame_Shift_Del	DEL	C	TCGA-73-4658-01A-01D-1753-08	30	10527291	238723330	6	159518											
ACTL8	81569	broad.mit.edu	37	chr1	18152600	18152600	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactttcgtgagaggcagcaGagtgccttggatgagagcaa	15	7	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18152600	A	A	18152600	2	1	203	1	0	0	0	0	0	0	0	1	202	933	33	4		4	ACTL8	1	18152600	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	7625309	18152600	231098021	7	159519											
HSPG2	3339	broad.mit.edu	37	chr1	22192107	22192107	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactcccccagcctgtgccaGaaaactgagtgctggatgga	11	12	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22192107	T	T	22192107	1	4	203	0	1	0	0	0	0	0	0	0	7500	957	33	3		3	HSPG2	1	22192107	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	4039507	22192107	227058514	8	159520											
HMGN2	3151	broad.mit.edu	37	chr1	26801731	26801731	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttataaaaatgcagaattttGttttactttttttttttttt	3	2	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26801731	T	T	26801731	1	4	203	0	1	0	0	0	0	0	0	0	7302	1392	48	3		3	HMGN2	1	26801731	3'UTR	SNP	G	TCGA-73-4658-01A-01D-1753-08	4609624	26801731	222448890	9	159521											
SMPDL3B	27293	broad.mit.edu	37	chr1	28261865	28261865	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctaaagatagcaaggcagGagctaggcagggaggcaggt	16	6	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28261865	T	T	28261865	1	4	203	0	1	0	0	0	0	0	0	0	14923	1189	41	3		3	SMPDL3B	1	28261865	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1460134	28261865	220988756	10	159522											
COL16A1	1307	broad.mit.edu	37	chr1	32163799	32163799	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tagaatttggaaagggaaagGacagagattcagagctccag	13	5	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32163799	A	A	32163799	1	1	203	0	1	0	0	0	0	0	0	0	3705	1189	41	4		4	COL16A1	1	32163799	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3901934	32163799	217086822	11	159523											
CTPS	1503	broad.mit.edu	37	chr1	41471703	41471703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtaactattttcataaCaagtattttggtatttcaga	6	4	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41471703	T	T	41471703	1	4	203	0	1	0	0	0	0	0	0	0	4056	493	17	4		4	CTPS	1	41471703	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	9307904	41471703	207778918	12	159524											
TIE1	7075	broad.mit.edu	37	chr1	43775098	43775098	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agccagagaagaccacagctGagttcgaggtgccccgcttg	13	12	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43775098	C	C	43775098	3	2	203	1	0	0	0	0	1	0	0	0	16016	1291	45	4	1262	4	TIE1	1	43775098	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2303395	43775098	205475523	13	159525											
IPO13	9670	broad.mit.edu	37	chr1	44432730	44432730	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtttgatgggggtgagggCccctcactgctgaggcagct	18	9	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44432730	A	A	44432730	1	1	203	0	1	0	0	0	0	0	0	0	7864	754	26	3		3	IPO13	1	44432730	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	657632	44432730	204817891	14	159526											
NRD1	4898	broad.mit.edu	37	chr1	52303128	52303128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaaaccacaatctaacCtgttctgtgatgttttaata	4	9	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52303128	A	A	52303128	1	1	203	0	1	0	0	0	0	0	0	0	10740	696	24	2		2	NRD1	1	52303128	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	7870398	52303128	196947493	15	159527											
GLIS1	148979	broad.mit.edu	37	chr1	54060157	54060157	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcaggaagctcgccttcCggcaggcttcaagttgcaag	12	12	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54060157	T	T	54060157	3	4	203	1	0	0	0	0	1	0	0	0	6509	652	23	4	1475	4	GLIS1	1	54060157	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1757029	54060157	195190464	16	159528											
SSBP3	23648	broad.mit.edu	37	chr1	54706730	54706730	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagcagcaactgctcgcCccaggcccagccgctattca	10	17	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54706730	T	T	54706730	1	4	203	0	1	0	0	0	0	0	0	0	15299	638	22	4		4	SSBP3	1	54706730	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	646573	54706730	194543891	17	159529											
C8A	731	broad.mit.edu	37	chr1	57347292	57347292	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggaaaccctacaactttctGaagtaccactttgaagtaag	7	10	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57347292	A	A	57347292	2	1	203	1	0	0	0	0	0	0	0	1	2441	1277	45	4		4	C8A	1	57347292	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	2640562	57347292	191903329	18	159530											
DNAJC6	9829	broad.mit.edu	37	chr1	65878517	65878517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagaaaaacatttccattGcttagagcccatatattggc	6	8	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65878517	T	T	65878517	1	4	203	0	1	0	0	0	0	0	0	0	4693	1334	46	3		3	DNAJC6	1	65878517	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	8531225	65878517	183372104	19	159531											
ACADM	34	broad.mit.edu	37	chr1	76205836	76205836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatattttttcttaattGttttatcttcaaatctctct	2	6	5	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76205836	T	T	76205836	1	4	203	0	1	0	0	0	0	0	0	0	113	1392	48	3		3	ACADM	1	76205836	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	10327319	76205836	173044785	20	159532											
PIGK	10026	broad.mit.edu	37	chr1	77594833	77594833	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgacccggagaaccccaCgaaatcatgcaaatcaagag	8	12	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77594833	A	A	77594833	1	1	203	0	1	0	0	0	0	0	0	0	11985	551	19	3		3	PIGK	1	77594833	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1388997	77594833	171655788	21	159533											
LPHN2	23266	broad.mit.edu	37	chr1	82407790	82407790	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttatggatgttaacctcCtccctcccctctccccacaa	4	19	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82407790	T	T	82407790	1	4	203	0	1	0	0	0	0	0	0	0	9003	696	24	4		4	LPHN2	1	82407790	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	4812957	82407790	166842831	22	159534											
LPHN2	23266	broad.mit.edu	37	chr1	82456132	82456132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatactctaccgctaaatgGtaattttaacaacagctact	6	9	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456132	T	T	82456132	3	4	203	1	0	0	0	0	1	0	0	0	9003	1261	44	3	3589	3	LPHN2	1	82456132	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	48342	82456132	166794489	23	159535											
WDR63	126820	broad.mit.edu	37	chr1	85559237	85559237	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctttggggacaagacCgatacccacctgaaagagta	11	11	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85559237	G	G	85559237	2	3	203	1	0	0	0	0	0	0	0	1	17441	639	23	4		4	WDR63	1	85559237	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	3103105	85559237	163691384	24	159536											
DNTTIP2	30836	broad.mit.edu	37	chr1	94337653	94337653	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtacttggggaagccatctCtatcatttttcttgtaaaat	7	7	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94337653	T	T	94337653	3	4	203	1	0	0	0	0	1	0	0	0	4722	913	32	4	240	4	DNTTIP2	1	94337653	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	8778416	94337653	154912968	25	159537											
DNTTIP2	30836	broad.mit.edu	37	chr1	94337751	94337751	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgtcatttctggagctttCataccaaaccagccatcccc	5	14	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94337751	G	G	94337751	3	3	203	1	0	0	0	0	1	0	0	0	4722	826	29	4	338	4	DNTTIP2	1	94337751	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	98	94337751	154912870	26	159538											
CNN3	1266	broad.mit.edu	37	chr1	95368680	95368680	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggttggtttggctgttacctGaggccagttcagtgaggact	15	7	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95368680	A	A	95368680	4	1	203	1	0	0	0	0	0	1	0	0	3643	1299	45	4	765	4	CNN3	1	95368680	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1030929	95368680	153881941	27	159539											
FAM102B	284611	broad.mit.edu	37	chr1	109171002	109171002	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagtattatatccaaggtGattttctctgacagggtata	9	5	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109171002	A	A	109171002	1	1	203	0	1	0	0	0	0	0	0	0	5429	1305	45	4		4	FAM102B	1	109171002	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	13802322	109171002	140079619	28	159540											
PRPF38B	55119	broad.mit.edu	37	chr1	109242068	109242068	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagggacagggatcgagaaaGagagaaagaaaatgagagag	16	2	0	6			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109242068	C	C	109242068	3	2	203	1	0	0	0	0	1	0	0	0	12674	942	33	4	1089	4	PRPF38B	1	109242068	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	71066	109242068	140008553	29	159541											
AHCYL1	10768	broad.mit.edu	37	chr1	110563488	110563488	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacaggtaacctggggagaAgcaagtgaaaagctcttttt	11	6	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110563488	T	T	110563488	1	4	203	0	1	0	0	0	0	0	0	0	410	87	3	5		5	AHCYL1	1	110563488	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	1321420	110563488	138687133	30	159542											
MOV10	4343	broad.mit.edu	37	chr1	113238174	113238174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccccagcagggacatccGcatggtacctgaggacatca	12	14	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113238174	T	T	113238174	3	4	203	1	0	0	0	0	1	0	0	0	9812	1087	38	3	1795	3	MOV10	1	113238174	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2674686	113238174	136012447	31	159543											
PDE4DIP	9659	broad.mit.edu	37	chr1	144865913	144865913	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactccaggccctgactgtaGaagttagaagtggatcctgt	12	9	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144865913	A	A	144865913	2	1	203	1	0	0	0	0	0	0	0	1	11737	933	33	4		4	PDE4DIP	1	144865913	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	31627739	144865913	104384708	32	159544											
SELENBP1	8991	broad.mit.edu	37	chr1	151337134	151337136	+	In_Frame_Del	DEL	CCT	-	-													agttggggttcaacttcagcCctccttttactgtgtctaca							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151337136	-	-	151337134	7	5	203	1	0	1	0	1	0	0	0	0	14127	623	22	0	118	0	SELENBP1	1	151337134	In_Frame_Del	DEL	CCT	TCGA-73-4658-01A-01D-1753-08	6471221	151337134	97913487	33	159545											
CGN	57530	broad.mit.edu	37	chr1	151509762	151509762	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaattcgacagtgtctaCgatccctcgtccattgcatc	9	12	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151509762	T	T	151509762	2	4	203	1	0	0	0	0	0	0	0	1	3333	547	19	4		4	CGN	1	151509762	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	172628	151509762	97740859	34	159546											
ATP8B2	57198	broad.mit.edu	37	chr1	154300287	154300287	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtccctgggatggataccttGagagctgttccccttttttc	10	11	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154300287	A	A	154300287	1	1	203	0	1	0	0	0	0	0	0	0	1199	1281	45	4		4	ATP8B2	1	154300287	5'Flank	SNP	G	TCGA-73-4658-01A-01D-1753-08	2790525	154300287	94950334	35	159547											
PBXIP1	57326	broad.mit.edu	37	chr1	154919293	154919293	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgggcctagaatatggttTgggacaaaggaagtcacaaa	12	5	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154919293	A	A	154919293	1	1	203	0	1	0	0	0	0	0	0	0	11590	1827	63	5		5	PBXIP1	1	154919293	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	619006	154919293	94331328	36	159548											
SCAMP3	10067	broad.mit.edu	37	chr1	155228742	155228742	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagggggccaattgttctgtCgagctgtaaggcacaaaaaa	13	7	1	0	rs143130366	byFrequency	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155228742	T	T	155228742	3	4	203	1	0	0	0	0	1	0	0	0	13984	884	31	4	671	4	SCAMP3	1	155228742	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	309449	155228742	94021879	37	159549											
PKLR	5313	broad.mit.edu	37	chr1	155271149	155271149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacttagagacccatgacCgaagctgcagggatgatatg	14	8	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155271149	A	A	155271149	3	1	203	1	0	0	0	0	1	0	0	0	12071	652	23	1	1741	1	PKLR	1	155271149	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	42407	155271149	93979472	38	159550											
ASH1L	55870	broad.mit.edu	37	chr1	155317424	155317424	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttcatcaggaccaagcttCtgcttcatttcctgaccctc	6	14	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155317424	T	T	155317424	1	4	203	0	1	0	0	0	0	0	0	0	1045	928	32	4		4	ASH1L	1	155317424	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	46275	155317424	93933197	39	159551											
ASH1L	55870	broad.mit.edu	37	chr1	155317620	155317620	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcaatctgggctgatgcctCatgccgggcattgtaatagg	12	9	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155317620	T	T	155317620	3	4	203	1	0	0	0	0	1	0	0	0	1045	835	29	4	1300	4	ASH1L	1	155317620	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	196	155317620	93933001	40	159552											
NTRK1	4914	broad.mit.edu	37	chr1	156849960	156849960	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caacacggaggtcagccccgGcccatggtcaccccttgctg	11	17	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156849960	A	A	156849960	1	1	203	0	1	0	0	0	0	0	0	0	10801	1218	42	4		4	NTRK1	1	156849960	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1532340	156849960	92400661	41	159553											
OR10K1	391109	broad.mit.edu	37	chr1	158435885	158435885	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccagctccatcacttcttCtgtgacatctcccctgtcct	4	17	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158435885	T	T	158435885	2	4	203	1	0	0	0	0	0	0	0	1	11007	912	32	4		4	OR10K1	1	158435885	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	1585925	158435885	90814736	42	159554											
OR10K1	391109	broad.mit.edu	37	chr1	158436017	158436017	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctcctacatccgcatcatCtctgccattctaaaaatccc	3	16	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158436017	A	A	158436017	2	1	203	1	0	0	0	0	0	0	0	1	11007	903	32	3		3	OR10K1	1	158436017	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	132	158436017	90814604	43	159555											
SPTA1	6708	broad.mit.edu	37	chr1	158636110	158636110	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctaacaacaaacctgaCgagcagccacagccgactcc	8	15	0	2	rs145972324	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158636110	T	T	158636110	3	4	203	1	0	0	0	0	1	0	0	0	15234	536	19	4	5191	4	SPTA1	1	158636110	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	200093	158636110	90614511	44	159556											
SPTA1	6708	broad.mit.edu	37	chr1	158641096	158641096	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtaaaattatgtatacagaGagggagccaatgcccaaact	9	7	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158641096	A	A	158641096	1	1	203	0	1	0	0	0	0	0	0	0	15234	957	33	4		4	SPTA1	1	158641096	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	4986	158641096	90609525	45	159557											
FCER1A	2205	broad.mit.edu	37	chr1	159277441	159277441	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgctaaaaatgaaggacaaAgcttggtctttctcttaggg	10	7	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159277441	G	G	159277441	1	3	203	0	1	0	0	0	0	0	0	0	5831	87	3	5		5	FCER1A	1	159277441	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	636345	159277441	89973180	46	159558											
ATP1A4	480	broad.mit.edu	37	chr1	160144297	160144297	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacaagggatgcagaaagcGtactgatctttgggactagt	12	6	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160144297	C	C	160144297	1	2	203	0	1	0	0	0	0	0	0	0	1135	1160	40	4		4	ATP1A4	1	160144297	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	866856	160144297	89106324	47	159559											
ARHGAP30	257106	broad.mit.edu	37	chr1	161039489	161039489	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctaccagtcccccatgggatCccagccagctgctgggcttg	11	16	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161039489	G	G	161039489	1	3	203	0	1	0	0	0	0	0	0	0	881	870	30	4		4	ARHGAP30	1	161039489	5'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	895192	161039489	88211132	48	159560											
PVRL4	81607	broad.mit.edu	37	chr1	161044216	161044216	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcagccacaacccaccCcagacctcacagctcccccg	6	23	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161044216	T	T	161044216	1	4	203	0	1	0	0	0	0	0	0	0	12950	638	22	4		4	PVRL4	1	161044216	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	4727	161044216	88206405	49	159561											
PVRL4	81607	broad.mit.edu	37	chr1	161044390	161044390	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttaccaaggacttctgctCcagtgcttaccaagaacatc	6	14	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161044390	G	G	161044390	1	3	203	0	1	0	0	0	0	0	0	0	12950	870	30	4		4	PVRL4	1	161044390	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	174	161044390	88206231	50	159562											
FCGR3A	2214	broad.mit.edu	37	chr1	161512661	161512661	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggagaccaaggaaaagtcGagagttggataagggatctg	15	5	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161512661	A	A	161512661	1	1	203	0	1	0	0	0	0	0	0	0	5841	1073	37	4		4	FCGR3A	1	161512661	3'UTR	SNP	G	TCGA-73-4658-01A-01D-1753-08	468271	161512661	87737960	51	159563											
C1orf129	80133	broad.mit.edu	37	chr1	170952642	170952642	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtagaatttctacccaaGgagtttcaacaagacgaaag	9	7	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170952642	T	T	170952642	3	4	203	1	0	0	0	0	1	0	0	0	2016	991	35	2	726	2	C1orf129	1	170952642	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	9439981	170952642	78297979	52	159564											
KLHL20	27252	broad.mit.edu	37	chr1	173710838	173710838	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcttgcaaaggatctccttCatccctctccagaagaggag	8	13	4	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173710838	T	T	173710838	1	4	203	0	1	0	0	0	0	0	0	0	8446	841	29	4		4	KLHL20	1	173710838	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	2758196	173710838	75539783	53	159565											
SOAT1	6646	broad.mit.edu	37	chr1	179318019	179318019	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atactccaactattatagaaCctggaatgtggtggtccatg	9	8	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179318019	T	T	179318019	3	4	203	1	0	0	0	0	1	0	0	0	15024	507	18	4	1302	4	SOAT1	1	179318019	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	5607181	179318019	69932602	54	159566											
GLT25D2	23127	broad.mit.edu	37	chr1	183932989	183932989	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggctggtatggtcactGtggcaatggaacgagagcca	15	7	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183932989	T	T	183932989	1	4	203	0	1	0	0	0	0	0	0	0	6531	1392	48	3		3	GLT25D2	1	183932989	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	4614970	183932989	65317632	55	159567											
FAM5C	339479	broad.mit.edu	37	chr1	190068141	190068141	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgcagggcaggaacgcGgtgcagaccacctggtcatt	14	11	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190068141	T	T	190068141	2	4	203	1	0	0	0	0	0	0	0	1	5645	1103	39	1		1	FAM5C	1	190068141	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	6135152	190068141	59182480	56	159568											
PTPRC	5788	broad.mit.edu	37	chr1	198713173	198713173	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactatctgtatttgttcttGaaattgtaggcccagtacat	7	7	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198713173	A	A	198713173	1	1	203	0	1	0	0	0	0	0	0	0	12905	1305	45	4		4	PTPRC	1	198713173	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	8645032	198713173	50537448	57	159569											
KIF21B	23046	broad.mit.edu	37	chr1	200973787	200973787	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagagtgaagggctaattGgcaagatgtccaaggaggac	15	6	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200973787	A	A	200973787	1	1	203	0	1	0	0	0	0	0	0	0	8359	1363	47	4		4	KIF21B	1	200973787	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	2260614	200973787	48276834	58	159570											
RNPEP	6051	broad.mit.edu	37	chr1	201958702	201958702	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaaggttggattggcctcaGaggtgaggaggactctgacc	16	8	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201958702	C	C	201958702	1	2	203	0	1	0	0	0	0	0	0	0	13620	957	33	4		4	RNPEP	1	201958702	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	984915	201958702	47291919	59	159571											
ELK4	2005	broad.mit.edu	37	chr1	205589516	205589516	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctccaaagcttggatagtttCttctgaagatggagaaatac	9	7	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205589516	A	A	205589516	4	1	203	1	0	0	0	0	0	1	0	0	5103	922	32	3	787	3	ELK4	1	205589516	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3630814	205589516	43661105	60	159572			2	125	199003537	3	3	291	C		1.626266e-05
ELK4	2005	broad.mit.edu	37	chr1	205589655	205589655	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gattttttctctgccagtttCtcggctggattctcagtctt	8	10	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205589655	T	T	205589655	2	4	203	1	0	0	0	0	0	0	0	1	5103	912	32	4		4	ELK4	1	205589655	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	139	205589655	43660966	61	159573			2	125	199003537	3	3	291	C		1.626266e-05
ELK4	2005	broad.mit.edu	37	chr1	205589806	205589806	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggtggtttatctttccctCcattctccacatctttggaa	7	11	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205589806	G	G	205589806	3	3	203	1	0	0	0	0	1	0	0	0	5103	855	30	4	1077	4	ELK4	1	205589806	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	151	205589806	43660815	62	159574			2	125	199003537	3	3	291	C		1.626266e-05
USH2A	7399	broad.mit.edu	37	chr1	216595491	216595491	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agctgtgacaaaaagtgcttCggtctgggagtccacatact	11	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216595491	G	G	216595491	3	3	203	1	0	0	0	0	1	0	0	0	17162	884	31	4	15718	4	USH2A	1	216595491	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	11005685	216595491	32655130	63	159575											
DUSP10	11221	broad.mit.edu	37	chr1	221879756	221879756	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccggcactcttggagctgGagggagttgtcacagaggtt	15	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	221879756	A	A	221879756	2	1	203	1	0	0	0	0	0	0	0	1	4850	1161	41	4		4	DUSP10	1	221879756	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	5284265	221879756	27370865	64	159576											
URB2	9816	broad.mit.edu	37	chr1	229773573	229773573	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catgtcctgggacctttcctCaaagagcagaagctgggcca	11	12	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229773573	T	T	229773573	2	4	203	1	0	0	0	0	0	0	0	1	17151	813	29	4		4	URB2	1	229773573	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	7893817	229773573	19477048	65	159577											
TRIM67	440730	broad.mit.edu	37	chr1	231334786	231334786	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccaaccaacccccaacctCtgccaggaaaacggactgga	7	17	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231334786	T	T	231334786	1	4	203	0	1	0	0	0	0	0	0	0	16665	928	32	4		4	TRIM67	1	231334786	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1561213	231334786	17915835	66	159578											
DISC1	27185	broad.mit.edu	37	chr1	231830502	231830502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaccctgctcaggaaatGggagccagtgctgcgggact	15	11	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231830502	T	T	231830502	3	4	203	1	0	0	0	0	1	0	0	0	4578	1357	47	2	1004	2	DISC1	1	231830502	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	495716	231830502	17420119	67	159579											
ARID4B	51742	broad.mit.edu	37	chr1	235377416	235377416	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttccaaaccacatatattGataaaagttgtggctgtgat	8	6	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235377416	C	C	235377416	1	2	203	0	1	0	0	0	0	0	0	0	922	1305	45	4		4	ARID4B	1	235377416	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3546914	235377416	13873205	68	159580											
NID1	4811	broad.mit.edu	37	chr1	236212121	236212121	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacacactctgctgctcgctGagtgatggagggggataagt	15	8	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236212121	A	A	236212121	4	1	203	1	0	0	0	0	0	1	0	0	10509	1299	45	4	3425	4	NID1	1	236212121	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	834705	236212121	13038500	69	159581											
RYR2	6262	broad.mit.edu	37	chr1	237886466	237886466	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggcaaatggctctttaCaaagacttaccaaacaggac	8	9	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237886466	T	T	237886466	2	4	203	1	0	0	0	0	0	0	0	1	13880	489	17	4		4	RYR2	1	237886466	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	1674345	237886466	11364155	70	159582											
RYR2	6262	broad.mit.edu	37	chr1	237919580	237919580	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacataaatggttgggatttGtgttcaggaaaaagaaatgg	12	2	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237919580	A	A	237919580	1	1	203	0	1	0	0	0	0	0	0	0	13880	1392	48	4		4	RYR2	1	237919580	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	33114	237919580	11331041	71	159583											
AKT3	10000	broad.mit.edu	37	chr1	243788147	243788147	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcatctgtagtggtttcatCaaactcttctcccagatgga	8	10	6	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	243788147	G	G	243788147	1	3	203	0	1	0	0	0	0	0	0	0	481	841	29	4		4	AKT3	1	243788147	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	5868567	243788147	5462474	72	159584											
HNRNPU	3192	broad.mit.edu	37	chr1	245023749	245023749	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcactgagacgatctcttGatattttaaaatgtagatca	7	6	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	245023749	C	C	245023749	4	2	203	1	0	0	0	0	0	1	0	0	7340	1294	45	4	1616	4	HNRNPU	1	245023749	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1235602	245023749	4226872	73	159585											
OR2M7	391196	broad.mit.edu	37	chr1	248487558	248487558	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcggagccaagcaatgataTatagaagaaaatttgtgtgg	11	4	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248487558	C	C	248487558	3	2	203	1	0	0	0	0	1	0	0	0	11108	1406	49	5	628	5	OR2M7	1	248487558	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	3463809	248487558	763063	74	159586											
OR2T27	403239	broad.mit.edu	37	chr1	248813843	248813843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcataggacatgagtcctaGgaggaagaactcagcccctg	11	10	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248813843	T	T	248813843	3	4	203	1	0	0	0	0	1	0	0	0	11115	991	35	2	613	2	OR2T27	1	248813843	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	326285	248813843	436778	75	159587											
PGBD2	267002	broad.mit.edu	37	chr1	249212112	249212112	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactctggagcagctaaaacGcggactcaggtccaccagcc	10	15	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	249212112	C	C	249212112	2	2	203	1	0	0	0	0	0	0	0	1	11876	1074	38	4		4	PGBD2	1	249212112	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	398269	249212112	38509	76	159588											
NBAS	51594	broad.mit.edu	37	chr2	15448505	15448505	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaacatgttagaattaactCagctgaaaggaaattatgaa	9	4	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15448505	A	A	15448505	1	1	203	0	1	0	0	0	0	0	0	0	10280	841	29	3		3	NBAS	2	15448505	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08		15448505	227750868	77	159589											
EMILIN1	11117	broad.mit.edu	37	chr2	27306061	27306061	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attacaagaggttgtgggccGgctccaggatcgtgtggatg	16	7	0	1	rs138622931	byFrequency	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27306061	C	C	27306061	3	2	203	1	0	0	0	0	1	0	0	0	5135	1116	39	4	1636	4	EMILIN1	2	27306061	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	11857556	27306061	215893312	78	159590											
EMILIN1	11117	broad.mit.edu	37	chr2	27308451	27308451	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccgctcacattccagtgaGgtgaaaagacccagagggtc	12	11	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27308451	C	C	27308451	1	2	203	0	1	0	0	0	0	0	0	0	5135	1015	35	4		4	EMILIN1	2	27308451	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	2390	27308451	215890922	79	159591											
PLB1	151056	broad.mit.edu	37	chr2	28843969	28843969	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaatagcagctgtgcaggaCtttctatgtgaattatctcc	9	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28843969	G	G	28843969	1	3	203	0	1	0	0	0	0	0	0	0	12119	580	20	4		4	PLB1	2	28843969	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1535518	28843969	214355404	80	159592											
LBH	81606	broad.mit.edu	37	chr2	30480308	30480308	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttctttcagatcttcccaGacccgtcagattttgaccgc	6	13	4	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30480308	T	T	30480308	3	4	203	1	0	0	0	0	1	0	0	0	8722	942	33	3	149	3	LBH	2	30480308	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1636339	30480308	212719065	81	159593											
PLEKHH2	130271	broad.mit.edu	37	chr2	43967968	43967968	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taaacagatcatgcatatgtGaaagaagcaaaacgtttttg	8	5	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43967968	A	A	43967968	1	1	203	0	1	0	0	0	0	0	0	0	12172	1305	45	4		4	PLEKHH2	2	43967968	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	13487660	43967968	199231405	82	159594											
TIA1	7072	broad.mit.edu	37	chr2	70457852	70457852	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atatataacttaaattttttCagtgcaagtcaccttcttta	3	7	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70457852	T	T	70457852	1	4	203	0	1	0	0	0	0	0	0	0	16010	841	29	4		4	TIA1	2	70457852	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	26489884	70457852	172741521	83	159595											
DYSF	8291	broad.mit.edu	37	chr2	71795348	71795348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgggaactggggcacaaCgggcctcacctaccccaagt	12	13	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71795348	A	A	71795348	3	1	203	1	0	0	0	0	1	0	0	0	4899	536	19	3	2984	3	DYSF	2	71795348	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1337496	71795348	171404025	84	159596											
C2orf65	130951	broad.mit.edu	37	chr2	74855368	74855368	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcctcctcattgagacatCaaataagctccaaaaggttc	5	11	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74855368	T	T	74855368	1	4	203	0	1	0	0	0	0	0	0	0	2206	841	29	4		4	C2orf65	2	74855368	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3060020	74855368	168344005	85	159597											
TSGA10	80705	broad.mit.edu	37	chr2	99689364	99689364	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacttaggcctcctttgatGagagagttagcaccttacac	9	10	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99689364	A	A	99689364	1	1	203	0	1	0	0	0	0	0	0	0	16742	1305	45	4		4	TSGA10	2	99689364	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	24833996	99689364	143510009	86	159598											
NMS	129521	broad.mit.edu	37	chr2	101087077	101087077	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctaaactctgaggatgtctGagacagaccttgatccccca	8	13	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101087077	A	A	101087077	1	1	203	0	1	0	0	0	0	0	0	0	10597	1305	45	4		4	NMS	2	101087077	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1397713	101087077	142112296	87	159599											
SLC9A4	389015	broad.mit.edu	37	chr2	103128623	103128623	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtctttcagagttcgCgtttctccagcaatcatttt	8	9	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103128623	T	T	103128623	1	4	203	0	1	0	0	0	0	0	0	0	14830	783	27	4		4	SLC9A4	2	103128623	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	2041546	103128623	140070750	88	159600											
GCC2	9648	broad.mit.edu	37	chr2	109085361	109085361	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcagtgtgttttgaaaaGgtcaggagataattacgcat	10	5	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109085361	T	T	109085361	1	4	203	0	1	0	0	0	0	0	0	0	6348	1015	35	2		2	GCC2	2	109085361	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	5956738	109085361	134114012	89	159601											
RANBP2	5903	broad.mit.edu	37	chr2	109367852	109367852	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatttgccccatgaaacctCaaggcttgaaacaaatgcac	6	12	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109367852	G	G	109367852	4	3	203	1	0	0	0	0	0	1	0	0	13136	838	29	4	1444	4	RANBP2	2	109367852	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	282491	109367852	133831521	90	159602											
GLI2	2736	broad.mit.edu	37	chr2	121740509	121740509	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggggccccactgacgccCcatggcttccaggcatctgt	11	16	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121740509	T	T	121740509	1	4	203	0	1	0	0	0	0	0	0	0	6502	638	22	4		4	GLI2	2	121740509	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	12372657	121740509	121458864	91	159603											
WDR33	55339	broad.mit.edu	37	chr2	128480480	128480480	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttatcaggaacataaacGggtcaagaaaaaatttgtaa	7	4	2	1	rs138493420	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128480480	A	A	128480480	1	1	203	0	1	0	0	0	0	0	0	0	17414	1131	39	4		4	WDR33	2	128480480	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	6739971	128480480	114718893	92	159604											
ACMSD	130013	broad.mit.edu	37	chr2	135619539	135619539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctttgtgtccatgtctagGagtaacagtgcaagcccttt	9	9	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135619539	A	A	135619539	3	1	203	1	0	0	0	0	1	0	0	0	144	1188	41	4	214	4	ACMSD	2	135619539	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	7139059	135619539	107579834	93	159605											
LRP1B	53353	broad.mit.edu	37	chr2	141643712	141643712	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttataatatatgtacctccaCtttcagaaagctttccccgg	5	11	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141643712	T	T	141643712	3	4	203	1	0	0	0	0	1	0	0	0	9042	565	20	4	10112	4	LRP1B	2	141643712	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	6024173	141643712	101555661	94	159606											
LRP1B	53353	broad.mit.edu	37	chr2	141643856	141643856	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttttgtgaagatcaatcCttctgatctcatgacgaata	6	9	4	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141643856	T	T	141643856	3	4	203	1	0	0	0	0	1	0	0	0	9042	681	24	4	10256	4	LRP1B	2	141643856	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	144	141643856	101555517	95	159607											
LRP1B	53353	broad.mit.edu	37	chr2	141777540	141777540	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggatgagacatttcaccctCtaaaagagtcttccgactct	8	11	4	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141777540	T	T	141777540	3	4	203	1	0	0	0	0	1	0	0	0	9042	922	32	4	12198	4	LRP1B	2	141777540	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	133684	141777540	101421833	96	159608											
NEB	4703	broad.mit.edu	37	chr2	152500637	152500637	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcgaaagccttccttgtActtgtactagagaaaaaaaa	7	8	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152500637	G	G	152500637	3	3	203	1	0	0	0	0	1	0	0	0	10397	391	14	5	18539	5	NEB	2	152500637	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	10723097	152500637	90698736	97	159609											
UPP2	151531	broad.mit.edu	37	chr2	158971692	158971692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctcgggtttgaggaagCtgaagaagacataaaagaca	14	5	0	5			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158971692	A	A	158971692	3	1	203	1	0	0	0	0	1	0	0	0	17139	797	28	3	449	3	UPP2	2	158971692	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	6471055	158971692	84227681	98	159610											
IFIH1	64135	broad.mit.edu	37	chr2	163134144	163134144	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcattaatttgtagggcctCattgtacttcctcaaatgtt	7	8	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163134144	T	T	163134144	3	4	203	1	0	0	0	0	1	0	0	0	7590	835	29	4	1280	4	IFIH1	2	163134144	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4162452	163134144	80065229	99	159611											
LRP2	4036	broad.mit.edu	37	chr2	170007439	170007439	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcacagcaatagcagctgGttggtccaggtcagtggaaa	12	8	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170007439	T	T	170007439	3	4	203	1	0	0	0	0	1	0	0	0	9043	1261	44	3	1456	3	LRP2	2	170007439	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	6873295	170007439	73191934	100	159612											
ZSWIM2	151112	broad.mit.edu	37	chr2	187703805	187703805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaacatgttcattttcGtcatttgttcctggttgggg	9	8	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187703805	T	T	187703805	3	4	203	1	0	0	0	0	1	0	0	0	18370	1136	40	3	1550	3	ZSWIM2	2	187703805	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	17696366	187703805	55495568	101	159613											
COL3A1	1281	broad.mit.edu	37	chr2	189856212	189856212	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acatattttatatgtatctaGggtgaaaatggtcttccagg	9	5	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189856212	C	C	189856212	5	2	203	1	0	0	0	0	0	0	1	0	3720	1014	35	4	898	4	COL3A1	2	189856212	Splice_Site	SNP	G	TCGA-73-4658-01A-01D-1753-08	2152407	189856212	53343161	102	159614											
C2orf47	79568	broad.mit.edu	37	chr2	200824549	200824549	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcccttgctgctaacataGatgaaattgtatttacatca	6	8	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200824549	C	C	200824549	3	2	203	1	0	0	0	0	1	0	0	0	2191	942	33	4	605	4	C2orf47	2	200824549	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	10968337	200824549	42374824	103	159615											
IDH1	3417	broad.mit.edu	37	chr2	209113181	209113181	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttgcagataatggcttctCtgaagaccgtgccacccaga	9	11	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209113181	T	T	209113181	3	4	203	1	0	0	0	0	1	0	0	0	7564	913	32	4	946	4	IDH1	2	209113181	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	8288632	209113181	34086192	104	159616											
PIKFYVE	200576	broad.mit.edu	37	chr2	209142380	209142380	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgactatgtgggcagattttCtgcagtcgttgctgtaatca	11	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209142380	T	T	209142380	2	4	203	1	0	0	0	0	0	0	0	1	12019	912	32	4		4	PIKFYVE	2	209142380	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	29199	209142380	34056993	105	159617											
RPE	6120	broad.mit.edu	37	chr2	210867517	210867517	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtaatggacgggtaactcctCcgggctccggtcgggcttgc	15	12	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210867517	T	T	210867517	1	4	203	0	1	0	0	0	0	0	0	0	13655	870	30	4		4	RPE	2	210867517	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1725137	210867517	32331856	106	159618											
RPE	6120	broad.mit.edu	37	chr2	210867594	210867594	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttgttggatgtaccgcgtCcctgtaccaccgagcgcctc	11	15	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210867594	T	T	210867594	1	4	203	0	1	0	0	0	0	0	0	0	13655	870	30	4		4	RPE	2	210867594	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	77	210867594	32331779	107	159619											
DOCK10	55619	broad.mit.edu	37	chr2	225658141	225658141	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcagatactctgcaaTgagagcagcaatatggatgt	9	7	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	225658141	C	C	225658141	3	2	203	1	0	0	0	0	1	0	0	0	4725	1464	51	5	1416	5	DOCK10	2	225658141	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	14790547	225658141	17541232	108	159620											
WDR69	164781	broad.mit.edu	37	chr2	228786187	228786187	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggctagaatctgggatgctCagactggccagtgcctccag	13	12	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228786187	T	T	228786187	4	4	203	1	0	0	0	0	0	1	0	0	17446	827	29	4	1169	4	WDR69	2	228786187	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3128046	228786187	14413186	109	159621											
GPR55	9290	broad.mit.edu	37	chr2	231774717	231774717	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaacaggatgtccttccGttagccccgggagatcgtgg	13	12	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231774717	A	A	231774717	1	1	203	0	1	0	0	0	0	0	0	0	6764	1160	40	4		4	GPR55	2	231774717	3'UTR	SNP	G	TCGA-73-4658-01A-01D-1753-08	2988530	231774717	11424656	110	159622											
PSMD1	5707	broad.mit.edu	37	chr2	231945065	231945065	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaactaaatttccaaaactCaagaatccaggataacatat	3	8	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231945065	T	T	231945065	1	4	203	0	1	0	0	0	0	0	0	0	12798	841	29	4		4	PSMD1	2	231945065	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	170348	231945065	11254308	111	159623											
EFHD1	80303	broad.mit.edu	37	chr2	233527523	233527523	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accctgcaggtatgacgctgGgcgggatggcttcatcgacc	14	12	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233527523	A	A	233527523	3	1	203	1	0	0	0	0	1	0	0	0	4988	1232	43	4	320	4	EFHD1	2	233527523	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1582458	233527523	9671850	112	159624											
TRPM8	79054	broad.mit.edu	37	chr2	234894470	234894470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcatctacatgttatccaCcaacatcctgctggtcaacc	6	14	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234894470	A	A	234894470	3	1	203	1	0	0	0	0	1	0	0	0	16717	507	18	3	2978	3	TRPM8	2	234894470	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1366947	234894470	8304903	113	159625											
IQCA1	79781	broad.mit.edu	37	chr2	237300616	237300616	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcaggctccttccccactCaccttgtcctttttctttcc	4	18	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237300616	T	T	237300616	1	4	203	0	1	0	0	0	0	0	0	0	7872	841	29	4		4	IQCA1	2	237300616	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	2406146	237300616	5898757	114	159626											
GRM7	2917	broad.mit.edu	37	chr3	7503364	7503364	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accacaaacaccagcaacccGggttaccgtctgatcgggca	9	15	1	1	rs138702582		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7503364	C	C	7503364	2	2	203	1	0	0	0	0	0	0	0	1	6868	1103	39	4		4	GRM7	3	7503364	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08		7503364	190519066	115	159627											
SLC6A11	6538	broad.mit.edu	37	chr3	10976904	10976904	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgagaccgccccaggagGgctggtgcgtttgggcaggg	20	9	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10976904	A	A	10976904	1	1	203	0	1	0	0	0	0	0	0	0	14788	1247	43	4		4	SLC6A11	3	10976904	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3473540	10976904	187045526	116	159628											
TIMP4	7079	broad.mit.edu	37	chr3	12200325	12200325	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cacccagcttggcgcgggccGagggctcccaggcatgacac	14	16	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12200325	C	C	12200325	3	2	203	1	0	0	0	0	1	0	0	0	16043	1057	37	4	678	4	TIMP4	3	12200325	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1223421	12200325	185822105	117	159629											
ZNF385D	79750	broad.mit.edu	37	chr3	21706452	21706452	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaatggtttaatatccaGcgatggttgcaaaggagggg	14	4	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21706452	A	A	21706452	2	1	203	1	0	0	0	0	0	0	0	1	18004	962	34	4		4	ZNF385D	3	21706452	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	9506127	21706452	176315978	118	159630											
FBXL2	25827	broad.mit.edu	37	chr3	33400411	33400411	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcaagttataattatcctGaaatgttaacaccatctcgt	4	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33400411	A	A	33400411	1	1	203	0	1	0	0	0	0	0	0	0	5773	1305	45	4		4	FBXL2	3	33400411	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	11693959	33400411	164622019	119	159631											
DCLK3	85443	broad.mit.edu	37	chr3	36778975	36778975	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accatgtcctccttgcccttGagtctggacttgtcaatgat	8	12	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36778975	C	C	36778975	2	2	203	1	0	0	0	0	0	0	0	1	4326	1277	45	4		4	DCLK3	3	36778975	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	3378564	36778975	161243455	120	159632											
SLC22A13	9390	broad.mit.edu	37	chr3	38311878	38311878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttttttgttcttggcaaGttttacaagagtagagggat	11	4	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38311878	T	T	38311878	1	4	203	0	1	0	0	0	0	0	0	0	14557	1044	36	3		3	SLC22A13	3	38311878	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1532903	38311878	159710552	121	159633											
XYLB	9942	broad.mit.edu	37	chr3	38415993	38415993	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggaaggtgacattgcGgtaaggcgacttcccacacc	13	11	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38415993	T	T	38415993	2	4	203	1	0	0	0	0	0	0	0	1	17589	1130	39	1		1	XYLB	3	38415993	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	104115	38415993	159606437	122	159634											
SCN10A	6336	broad.mit.edu	37	chr3	38766584	38766584	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaataccccaccttcaCcgccaccctccagcctctac	4	21	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38766584	A	A	38766584	1	1	203	0	1	0	0	0	0	0	0	0	14025	522	18	3		3	SCN10A	3	38766584	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	350591	38766584	159255846	123	159635											
SCN10A	6336	broad.mit.edu	37	chr3	38798464	38798464	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacagccatgcagctgaccCaccagcctccaaccaagtct	7	18	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38798464	T	T	38798464	1	4	203	0	1	0	0	0	0	0	0	0	14025	609	21	4		4	SCN10A	3	38798464	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	31880	38798464	159223966	124	159636											
ZNF501	115560	broad.mit.edu	37	chr3	44775991	44775991	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccttcaaagtgtagtgaAtgtgggaagttctttactca	9	6	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44775991	G	G	44775991	2	3	203	1	0	0	0	0	0	0	0	1	18076	98	4	5		5	ZNF501	3	44775991	Silent	SNP	A	TCGA-73-4658-01A-01D-1753-08	5977527	44775991	153246439	125	159637											
LTF	4057	broad.mit.edu	37	chr3	46477803	46477803	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atccaataaatcaaagagaaTactaagagttttctctgccc	5	9	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46477803	A	A	46477803	1	1	203	0	1	0	0	0	0	0	0	0	9166	1421	49	5		5	LTF	3	46477803	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	1701812	46477803	151544627	126	159638											
SETD2	29072	broad.mit.edu	37	chr3	47162194	47162194	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagttccaggaggtctaCctgatcttggatcccagtaa	9	13	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47162194	T	T	47162194	3	4	203	1	0	0	0	0	1	0	0	0	14244	507	18	4	3838	4	SETD2	3	47162194	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	684391	47162194	150860236	127	159639											
MST1R	4486	broad.mit.edu	37	chr3	49927461	49927461	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatggtggggcaccccgtgtCagcagttcccacagcagcac	12	14	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49927461	A	A	49927461	2	1	203	1	0	0	0	0	0	0	0	1	9985	813	29	3		3	MST1R	3	49927461	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	2765267	49927461	148094969	128	159640											
GLT8D1	55830	broad.mit.edu	37	chr3	52731647	52731647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcaattgtataaaacaaCatacaaaccacagaaaaaca	2	8	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52731647	A	A	52731647	1	1	203	0	1	0	0	0	0	0	0	0	6533	493	17	3		3	GLT8D1	3	52731647	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	2804186	52731647	145290783	129	159641											
CACNA1D	776	broad.mit.edu	37	chr3	53753935	53753935	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attataacattgatactgaaTtgcagtcagtcaattgaatc	6	6	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53753935	C	C	53753935	1	2	203	0	1	0	0	0	0	0	0	0	2567	1508	52	5		5	CACNA1D	3	53753935	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	1022288	53753935	144268495	130	159642											
GBE1	2632	broad.mit.edu	37	chr3	81539441	81539441	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatattgaatttcagacactTgatggcttggctagacaact	8	7	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81539441	A	A	81539441	1	1	203	0	1	0	0	0	0	0	0	0	6332	1827	63	5		5	GBE1	3	81539441	3'UTR	SNP	T	TCGA-73-4658-01A-01D-1753-08	27785506	81539441	116482989	131	159643											
EPHA3	2042	broad.mit.edu	37	chr3	89521672	89521672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactaccttccgcacaacaGgtgactggcttaatggtgtc	9	12	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89521672	T	T	89521672	3	4	203	1	0	0	0	0	1	0	0	0	5210	1000	35	2	2837	2	EPHA3	3	89521672	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	7982231	89521672	108500758	132	159644											
ZPLD1	131368	broad.mit.edu	37	chr3	102171778	102171778	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctgaaagagacatcaGtgtctattgtggagtgcagg	13	6	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102171778	T	T	102171778	3	4	203	1	0	0	0	0	1	0	0	0	18350	1029	36	3	180	3	ZPLD1	3	102171778	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	12650106	102171778	95850652	133	159645											
CBLB	868	broad.mit.edu	37	chr3	105456052	105456052	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatgaggtgtaggttcaCataatccagttaaatcagga	11	6	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105456052	G	G	105456052	3	3	203	1	0	0	0	0	1	0	0	0	2727	478	17	4	1962	4	CBLB	3	105456052	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3284274	105456052	92566378	134	159646											
KIAA1524	57650	broad.mit.edu	37	chr3	108278606	108278606	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctttatattctacacacctCtgtttcagcttgagttcttt	4	10	5	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108278606	G	G	108278606	3	3	203	1	0	0	0	0	1	0	0	0	8309	922	32	4	730	4	KIAA1524	3	108278606	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2822554	108278606	89743824	135	159647											
ABHD10	55347	broad.mit.edu	37	chr3	111710449	111710449	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgatcgagtactcagcacaGatgtggatgtcatcctccga	10	12	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111710449	T	T	111710449	3	4	203	1	0	0	0	0	1	0	0	0	74	942	33	3	820	3	ABHD10	3	111710449	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3431843	111710449	86311981	136	159648											
KIAA2018	205717	broad.mit.edu	37	chr3	113388995	113388995	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agggcaggagaacatgggatCagctctcctattctgtttat	11	8	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113388995	T	T	113388995	2	4	203	1	0	0	0	0	0	0	0	1	8338	813	29	4		4	KIAA2018	3	113388995	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	1678546	113388995	84633435	137	159649											
LSAMP	4045	broad.mit.edu	37	chr3	115560692	115560692	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctgctttggcatacttacTgaaaaggactaggctggcat	10	10	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115560692	A	A	115560692	4	1	203	1	0	0	0	0	0	1	0	0	9135	1594	55	5	105	5	LSAMP	3	115560692	Nonsense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	2171697	115560692	82461738	138	159650											
UROC1	131669	broad.mit.edu	37	chr3	126220016	126220016	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtctttgctcagggggcccCatctgggttcccaagctggc	14	13	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126220016	G	G	126220016	1	3	203	0	1	0	0	0	0	0	0	0	17154	609	21	4		4	UROC1	3	126220016	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	10659324	126220016	71802414	139	159651											
MCM2	4171	broad.mit.edu	37	chr3	127335987	127335987	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctgggtcacggaggctgGtggaactcagggggtgtgtg	19	8	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127335987	A	A	127335987	1	1	203	0	1	0	0	0	0	0	0	0	9479	1276	44	4		4	MCM2	3	127335987	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1115971	127335987	70686443	140	159652											
EPHB1	2047	broad.mit.edu	37	chr3	134670588	134670588	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaagtcaggagctttgggCctcttactcggaatggtttt	12	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134670588	G	G	134670588	3	3	203	1	0	0	0	0	1	0	0	0	5216	739	26	4	509	4	EPHB1	3	134670588	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	7334601	134670588	63351842	141	159653											
CLDN18	51208	broad.mit.edu	37	chr3	137717828	137717828	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacttgtacaacaaccccGtaacagctgttttcaactac	5	12	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137717828	A	A	137717828	3	1	203	1	0	0	0	0	1	0	0	0	3510	1145	40	4	120	4	CLDN18	3	137717828	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3047240	137717828	60304602	142	159654											
FAM194A	131831	broad.mit.edu	37	chr3	150387102	150387102	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagacatttccattgggatGatagcaggaacttctgccag	10	10	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150387102	T	T	150387102	3	4	203	1	0	0	0	0	1	0	0	0	5573	1290	45	3	523	3	FAM194A	3	150387102	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	12669274	150387102	47635328	143	159655											
SPATA16	83893	broad.mit.edu	37	chr3	172834887	172834887	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catagtttcctgtcaccaatCtatattttctttaatcccat	2	11	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172834887	T	T	172834887	1	4	203	0	1	0	0	0	0	0	0	0	15117	928	32	4		4	SPATA16	3	172834887	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	22447785	172834887	25187543	144	159656											
NLGN1	22871	broad.mit.edu	37	chr3	173997377	173997377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttatttccttgcaatttctCcaaaaatgatgtgatgctga	7	7	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173997377	A	A	173997377	3	1	203	1	0	0	0	0	1	0	0	0	10556	855	30	3	1600	3	NLGN1	3	173997377	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1162490	173997377	24025053	145	159657											
NAALADL2	254827	broad.mit.edu	37	chr3	175184875	175184875	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttatccgtgccttgatgtCaaaagttaagagagggtgga	13	5	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175184875	G	G	175184875	4	3	203	1	0	0	0	0	0	1	0	0	10224	838	29	4	1466	4	NAALADL2	3	175184875	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1187498	175184875	22837555	146	159658											
NDUFB5	4711	broad.mit.edu	37	chr3	179332786	179332786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgacacagtggagaccatgGgaaaagactatttgtcatca	10	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179332786	T	T	179332786	3	4	203	1	0	0	0	0	1	0	0	0	10379	1232	43	2	158	2	NDUFB5	3	179332786	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4147911	179332786	18689644	147	159659											
YEATS2	55689	broad.mit.edu	37	chr3	183472281	183472281	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgttatgtttaacaaaagGaagtttatcactgttgattg	9	3	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183472281	T	T	183472281	1	4	203	0	1	0	0	0	0	0	0	0	17599	1189	41	3		3	YEATS2	3	183472281	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	4139495	183472281	14550149	148	159660											
UTS2D	257313	broad.mit.edu	37	chr3	190993092	190993092	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atctacagcataggacgtctCagaatccttctcctccacta	5	14	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190993092	A	A	190993092	4	1	203	1	0	0	0	0	0	1	0	0	17232	835	29	3	84	3	UTS2D	3	190993092	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	7520811	190993092	7029338	149	159661											
ZNF718	255403	broad.mit.edu	37	chr4	53277	53277	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctgcgttctcggctccGggaggcctcggtgattcagc	13	14	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53277	T	T	53277	1	4	203	1	0	0	0	0	0	0	0	0	18248	1130	39	1		1	ZNF718	4	53277	Translation_Start_Site	SNP	G	TCGA-73-4658-01A-01D-1753-08		53277	191100999	150	159662											
PPP2R2C	5522	broad.mit.edu	37	chr4	6473956	6473956	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtccgtgtcctcgcccaTtgaaggccgtgcccggtgct	13	15	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6473956	C	C	6473956	3	2	203	1	0	0	0	0	1	0	0	0	12487	1493	52	5	1452	5	PPP2R2C	4	6473956	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	6420679	6473956	184680320	151	159663											
KIAA0232	9778	broad.mit.edu	37	chr4	6863504	6863504	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacctcgcagcaggtactttCattgatggtcattttgtaga	9	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6863504	T	T	6863504	2	4	203	1	0	0	0	0	0	0	0	1	8233	825	29	4		4	KIAA0232	4	6863504	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	389548	6863504	184290772	152	159664											
HTRA3	94031	broad.mit.edu	37	chr4	8305896	8305896	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggggaggggccttgacgGcagactctttccagcctggt	15	11	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8305896	A	A	8305896	1	1	203	0	1	0	0	0	0	0	0	0	7525	1218	42	4		4	HTRA3	4	8305896	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1442392	8305896	182848380	153	159665											
GBA3	57733	broad.mit.edu	37	chr4	22748963	22748963	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgatgatttgttaaaaaatGgggttactcccattgtgacc	9	7	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22748963	C	C	22748963	3	2	203	1	0	0	0	0	1	0	0	0	6330	1348	47	4	341	4	GBA3	4	22748963	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	14443067	22748963	168405313	154	159666											
ARAP2	116984	broad.mit.edu	37	chr4	36069551	36069551	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttcaaaatctgctcatccTgtaattcttttggaagggtt	7	8	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36069551	A	A	36069551	3	1	203	1	0	0	0	0	1	0	0	0	841	1580	55	5	25	5	ARAP2	4	36069551	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	13320588	36069551	155084725	155	159667											
TLR10	81793	broad.mit.edu	37	chr4	38776982	38776983	+	Missense_Mutation	DNP	AA	TT	TT													ttctgttatggcatagaatcAaaactctcagtttggagaca							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	38776983	TT	TT	38776982	3	4	203	1	0	0	0	0	1	0	0	0	16073	131	5	5	2209	5	TLR10	4	38776982	Missense_Mutation	DNP	AA	TCGA-73-4658-01A-01D-1753-08	2707431	38776982	152377294	156	159668											
APBB2	323	broad.mit.edu	37	chr4	40827964	40827964	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggaacttctggaccagctCagtctttggtgttggaaaat	12	7	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40827964	T	T	40827964	3	4	203	1	0	0	0	0	1	0	0	0	763	835	29	4	539	4	APBB2	4	40827964	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2050982	40827964	150326312	157	159669											
CEP135	9662	broad.mit.edu	37	chr4	56841163	56841163	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctttataagagtaggccaGaaagtatctttatgaataaa	7	6	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56841163	A	A	56841163	1	1	203	0	1	0	0	0	0	0	0	0	3277	957	33	4		4	CEP135	4	56841163	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	16013199	56841163	134313113	158	159670											
CDS1	1040	broad.mit.edu	37	chr4	85530716	85530716	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgagtgtctcttgctttGtttttcaacatttatatagg	7	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85530716	A	A	85530716	1	1	203	0	1	0	0	0	0	0	0	0	3207	1392	48	4		4	CDS1	4	85530716	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	28689553	85530716	105623560	159	159671											
WDFY3	23001	broad.mit.edu	37	chr4	85707201	85707201	+	Silent	SNP	C	A	A													cttgccactgttagagacgaCacagagagtgcatagaggcc							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85707201	A	A	85707201	2	1	203	1	0	0	0	0	0	0	0	1	17397	465	17	3		3	WDFY3	4	85707201	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	176485	85707201	105447075	160	159672	679	2									
WDFY3	23001	broad.mit.edu	37	chr4	85707203	85707203	+	Missense_Mutation	SNP	C	A	A													tgccactgttagagacgacaCagagagtgcatagaggccaa							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85707203	A	A	85707203	3	1	203	1	0	0	0	0	1	0	0	0	17397	478	17	3	6769	3	WDFY3	4	85707203	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2	85707203	105447073	161	159673	679	2									
PDHA2	5161	broad.mit.edu	37	chr4	96761377	96761377	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagtgctggtggcatccCgtaactcctcaaatgacgct	11	12	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761377	A	A	96761377	3	1	203	1	0	0	0	0	1	0	0	0	11759	652	23	1	78	1	PDHA2	4	96761377	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	11054174	96761377	94392899	162	159674											
NFKB1	4790	broad.mit.edu	37	chr4	103505718	103505718	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggacacggtgttttttagtAcactgtgtctaaacattggg	11	6	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103505718	G	G	103505718	1	3	203	0	1	0	0	0	0	0	0	0	10470	406	14	5		5	NFKB1	4	103505718	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	6744341	103505718	87648558	163	159675											
NHEDC2	133308	broad.mit.edu	37	chr4	103950041	103950041	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggtggcaacacaaaggcCtgtaagaaatattcaatttt	8	7	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103950041	T	T	103950041	5	4	203	1	0	0	0	0	0	0	1	0	10496	695	24	4	366	4	NHEDC2	4	103950041	Splice_Site	SNP	C	TCGA-73-4658-01A-01D-1753-08	444323	103950041	87204235	164	159676											
C4orf3	401152	broad.mit.edu	37	chr4	120221511	120221511	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catggcaaaaaatacacaaaGagaaacaccaccacatcgaa	5	11	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120221511	C	C	120221511	2	2	203	1	0	0	0	0	0	0	0	1	2283	929	33	4		4	C4orf3	4	120221511	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	16271470	120221511	70932765	165	159677											
ADAD1	132612	broad.mit.edu	37	chr4	123333743	123333743	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctttctctagacgtcttaAtccacattctatatctgcat	3	11	5	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123333743	C	C	123333743	3	2	203	1	0	0	0	0	1	0	0	0	231	101	4	5	1058	5	ADAD1	4	123333743	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	3112232	123333743	67820533	166	159678											
PHF17	79960	broad.mit.edu	37	chr4	129767550	129767550	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtttaggacagacctgatCactgccatgaagttgcatga	11	8	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129767550	T	T	129767550	2	4	203	1	0	0	0	0	0	0	0	1	11923	816	29	4		4	PHF17	4	129767550	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	6433807	129767550	61386726	167	159679											
PCDH10	57575	broad.mit.edu	37	chr4	134072378	134072378	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgccagagatcagcttcagCaccgtgaaggaagcggtgag	15	10	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134072378	G	G	134072378	3	3	203	1	0	0	0	0	1	0	0	0	11601	709	25	4	1085	4	PCDH10	4	134072378	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4304828	134072378	57081898	168	159680											
ELMOD2	255520	broad.mit.edu	37	chr4	141464740	141464752	+	Splice_Site	DEL	TGTGAGTATTAAA	-	-													aacactttcatcagttttacTgtgagtattaaaatgagtta							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141464752	-	-	141464740	8	5	203	1	0	1	0	1	0	0	1	0	5111	1594	55	0	762	0	ELMOD2	4	141464740	Splice_Site	DEL	TGTGAGTATTAAA	TCGA-73-4658-01A-01D-1753-08	7392362	141464740	49689536	169	159681											
FSTL5	56884	broad.mit.edu	37	chr4	162680590	162680590	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctataaaattcttcaagagCcaggtgcttgtcagcattaa	7	8	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162680590	G	G	162680590	3	3	203	1	0	0	0	0	1	0	0	0	6140	739	26	4	1887	4	FSTL5	4	162680590	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	21215850	162680590	28473686	170	159682											
DDX60	55601	broad.mit.edu	37	chr4	169173603	169173603	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcattatctacaactaaCaagctatggctgacaaatga	6	8	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169173603	A	A	169173603	1	1	203	0	1	0	0	0	0	0	0	0	4411	493	17	3		3	DDX60	4	169173603	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	6493013	169173603	21980673	171	159683											
SORBS2	8470	broad.mit.edu	37	chr4	186544288	186544288	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acatctggcagcagctcactGatgaggcggtgcaggatgct	14	10	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186544288	A	A	186544288	2	1	203	1	0	0	0	0	0	0	0	1	15042	1280	45	4		4	SORBS2	4	186544288	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	17370685	186544288	4609988	172	159684											
PLEKHG4B	153478	broad.mit.edu	37	chr5	182155	182155	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccacagcggtgtcctcctCtgaccacgccgcccccttca	8	20	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182155	T	T	182155	3	4	203	1	0	0	0	0	1	0	0	0	12167	913	32	4	3603	4	PLEKHG4B	5	182155	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08		182155	180733105	173	159685											
TRIP13	9319	broad.mit.edu	37	chr5	911998	911998	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaccacttctaacatcaccGagaagatcgacgtggccttc	8	13	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	911998	A	A	911998	3	1	203	1	0	0	0	0	1	0	0	0	16682	1059	37	4	949	4	TRIP13	5	911998	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	729843	911998	180003262	174	159686											
NKD2	85409	broad.mit.edu	37	chr5	1034329	1034329	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtaggaggcgaggtcccGgcccccacgtccccccacag	14	17	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1034329	A	A	1034329	1	1	203	0	1	0	0	0	0	0	0	0	10537	1131	39	4		4	NKD2	5	1034329	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	122331	1034329	179880931	175	159687											
SLC6A3	6531	broad.mit.edu	37	chr5	1394811	1394811	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgttcgtgtctctcccaTtgcaggatgacttcctgggg	12	10	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1394811	C	C	1394811	1	2	203	0	1	0	0	0	0	0	0	0	14799	1508	52	5		5	SLC6A3	5	1394811	3'UTR	SNP	T	TCGA-73-4658-01A-01D-1753-08	360482	1394811	179520449	176	159688											
PRDM9	56979	broad.mit.edu	37	chr5	23522899	23522899	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgggcttggagtatggaatGaggcatctgatctgccgctg	15	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23522899	A	A	23522899	3	1	203	1	0	0	0	0	1	0	0	0	12569	1291	45	4	813	4	PRDM9	5	23522899	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	22128088	23522899	157392361	177	159689											
CDH10	1008	broad.mit.edu	37	chr5	24498705	24498705	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttatataggcatcttgtgGgtatgaagtgctcacataca	9	6	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24498705	A	A	24498705	1	1	203	0	1	0	0	0	0	0	0	0	3126	1247	43	4		4	CDH10	5	24498705	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	975806	24498705	156416555	178	159690											
CDH10	1008	broad.mit.edu	37	chr5	24535931	24535931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacttgcaccacagaagtaCctgaagtatccaaattcagc	7	11	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24535931	A	A	24535931	3	1	203	1	0	0	0	0	1	0	0	0	3126	521	18	3	1875	3	CDH10	5	24535931	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	37226	24535931	156379329	179	159691											
NPR3	4883	broad.mit.edu	37	chr5	32712263	32712263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcggcgcggggcgccaaGccagaccttatcctggggcc	17	15	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32712263	T	T	32712263	3	4	203	1	0	0	0	0	1	0	0	0	10691	962	34	3	383	3	NPR3	5	32712263	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	8176332	32712263	148202997	180	159692											
NIPBL	25836	broad.mit.edu	37	chr5	36976076	36976076	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctccatccaaggactctaCtaaacttacattaagacttt	3	11	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36976076	T	T	36976076	3	4	203	1	0	0	0	0	1	0	0	0	10523	565	20	4	1097	4	NIPBL	5	36976076	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4263813	36976076	143939184	181	159693											
ITGA1	3672	broad.mit.edu	37	chr5	52240860	52240860	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtagcagcaatcaaaaaAgagaggtaagtgcaacatga	10	5	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52240860	G	G	52240860	3	3	203	1	0	0	0	0	1	0	0	0	7942	64	3	5	3479	5	ITGA1	5	52240860	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	15264784	52240860	128674400	182	159694											
MAP3K1	4214	broad.mit.edu	37	chr5	56189376	56189376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattgctagtgcaactactGctccatcgatcccttcacat	6	13	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56189376	T	T	56189376	3	4	203	1	0	0	0	0	1	0	0	0	9335	1319	46	3	4486	3	MAP3K1	5	56189376	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3948516	56189376	124725884	183	159695											
RGS7BP	401190	broad.mit.edu	37	chr5	63890418	63890418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattactcagaaagctattaGggttaatggaacatttgact	8	5	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63890418	T	T	63890418	1	4	203	0	1	0	0	0	0	0	0	0	13420	1015	35	2		2	RGS7BP	5	63890418	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	7701042	63890418	117024842	184	159696											
TAF9	6880	broad.mit.edu	37	chr5	68661433	68661433	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaattgtggtcacatatcgGaaggcaaactccaacatctg	9	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68661433	C	C	68661433	3	2	203	1	0	0	0	0	1	0	0	0	15654	1165	41	4	1076	4	TAF9	5	68661433	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4771015	68661433	112253827	185	159697											
SV2C	22987	broad.mit.edu	37	chr5	75490824	75490824	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgggaaggaaacagtctCttctgatttgcatgtctgtc	11	7	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75490824	T	T	75490824	3	4	203	1	0	0	0	0	1	0	0	0	15537	913	32	4	667	4	SV2C	5	75490824	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	6829391	75490824	105424436	186	159698											
SV2C	22987	broad.mit.edu	37	chr5	75597420	75597420	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctaagccctgtgagacCactgaaaaattattttaaaa	5	9	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75597420	A	A	75597420	1	1	203	0	1	0	0	0	0	0	0	0	15537	609	21	2		2	SV2C	5	75597420	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	106596	75597420	105317840	187	159699											
MCC	4163	broad.mit.edu	37	chr5	112418659	112418659	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatctcttggatattggagCagtcctgaagtgagtgggcc	13	7	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112418659	G	G	112418659	3	3	203	1	0	0	0	0	1	0	0	0	9466	710	25	4	1413	4	MCC	5	112418659	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	36821239	112418659	68496601	188	159700											
SLC22A5	6584	broad.mit.edu	37	chr5	131730013	131730013	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaaagactgtcttgccaGaaatggccagcttgtgcaga	13	8	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131730013	A	A	131730013	1	1	203	0	1	0	0	0	0	0	0	0	14571	957	33	4		4	SLC22A5	5	131730013	3'UTR	SNP	G	TCGA-73-4658-01A-01D-1753-08	19311354	131730013	49185247	189	159701											
HSPA4	3308	broad.mit.edu	37	chr5	132439557	132439557	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgactgtctcctggttgcagGaggaccagtatgatcatttg	12	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132439557	T	T	132439557	4	4	203	1	0	0	0	0	0	1	0	0	7481	1188	41	3	2228	3	HSPA4	5	132439557	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	709544	132439557	48475703	190	159702											
HSPA4	3308	broad.mit.edu	37	chr5	132439655	132439655	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aataacaagctaaatctgcaGaacaagcagagtttgaccat	7	8	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132439655	A	A	132439655	2	1	203	1	0	0	0	0	0	0	0	1	7481	933	33	4		4	HSPA4	5	132439655	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	98	132439655	48475605	191	159703											
SEC24A	10802	broad.mit.edu	37	chr5	134023904	134023904	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actagaacaaaaattggcttCataacatttgacagtacaat	5	7	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134023904	T	T	134023904	2	4	203	1	0	0	0	0	0	0	0	1	14107	825	29	4		4	SEC24A	5	134023904	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	1584249	134023904	46891356	192	159704											
DDX46	9879	broad.mit.edu	37	chr5	134130829	134130829	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaagtcgtataccactactCtagccttcagtattttacca	4	12	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134130829	T	T	134130829	1	4	203	0	1	0	0	0	0	0	0	0	4397	928	32	4		4	DDX46	5	134130829	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	106925	134130829	46784431	193	159705											
CDC25C	995	broad.mit.edu	37	chr5	137626274	137626274	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattctcggcaaacagagaaGattcagatccaaaatgactc	7	10	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137626274	A	A	137626274	1	1	203	0	1	0	0	0	0	0	0	0	3094	957	33	4		4	CDC25C	5	137626274	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3495445	137626274	43288986	194	159706											
ETF1	2107	broad.mit.edu	37	chr5	137846207	137846207	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccagtactctaacacacGgatttacgcttgcacgtatc	7	13	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137846207	A	A	137846207	1	1	203	0	1	0	0	0	0	0	0	0	5310	1131	39	4		4	ETF1	5	137846207	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	219933	137846207	43069053	195	159707											
PCDHA6	56142	broad.mit.edu	37	chr5	140209494	140209494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcaggctacaacgcgtgGctttcgtatgagctgcagcc	12	12	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140209494	T	T	140209494	3	4	203	1	0	0	0	0	1	0	0	0	11622	1212	42	3	1820	3	PCDHA6	5	140209494	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2363287	140209494	40705766	196	159708											
PCDHA12	56137	broad.mit.edu	37	chr5	140256157	140256157	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggatgctcaggtgggtaCcgtcattgccctgattagcg	14	9	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140256157	T	T	140256157	3	4	203	1	0	0	0	0	1	0	0	0	11616	507	18	4	1102	4	PCDHA12	5	140256157	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	46663	140256157	40659103	197	159709											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712736	140712736	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attcttgatttaacttactaGcgttcgctctttgctacaga	6	9	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140712736	A	A	140712736	1	1	203	0	1	0	0	0	0	0	0	0	11644	986	34	4		4	PCDHGA1	5	140712736	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	456579	140712736	40202524	198	159710											
PCDHGB1	56104	broad.mit.edu	37	chr5	140730766	140730766	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagacaagtagatatgtgttGagtgtggaagctaaggatgg	16	2	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140730766	C	C	140730766	3	2	203	1	0	0	0	0	1	0	0	0	11656	1281	45	4	941	4	PCDHGB1	5	140730766	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	18030	140730766	40184494	199	159711											
ARAP3	64411	broad.mit.edu	37	chr5	141036183	141036183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccgcaacagccccaccCgtgggctctcacgtcggata	10	17	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141036183	A	A	141036183	3	1	203	1	0	0	0	0	1	0	0	0	842	652	23	1	985	1	ARAP3	5	141036183	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	305417	141036183	39879077	200	159712											
PCDH1	5097	broad.mit.edu	37	chr5	141243094	141243094	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggttgaacttgagggacttCtgcagcccggcctcatcctc	11	13	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141243094	T	T	141243094	2	4	203	1	0	0	0	0	0	0	0	1	11600	912	32	4		4	PCDH1	5	141243094	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	206911	141243094	39672166	201	159713											
PCDH1	5097	broad.mit.edu	37	chr5	141243969	141243969	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagctgcacctgggcattctCccccttgtctccatcaatga	8	15	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141243969	A	A	141243969	4	1	203	1	0	0	0	0	0	1	0	0	11600	864	30	3	1882	3	PCDH1	5	141243969	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	875	141243969	39671291	202	159714											
POU4F3	5459	broad.mit.edu	37	chr5	145719212	145719212	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacggcaagaaccatccgttCaagcccgacgccacctacca	7	18	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145719212	A	A	145719212	3	1	203	1	0	0	0	0	1	0	0	0	12376	825	29	3	228	3	POU4F3	5	145719212	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4475243	145719212	35196048	203	159715											
TNIP1	10318	broad.mit.edu	37	chr5	150415097	150415097	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaatccatgccccctctccCcacgaggacaggccagttgc	8	19	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150415097	A	A	150415097	1	1	203	0	1	0	0	0	0	0	0	0	16437	638	22	2		2	TNIP1	5	150415097	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	4695885	150415097	30500163	204	159716											
CYFIP2	26999	broad.mit.edu	37	chr5	156746826	156746826	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcaggatggagagcgtcttCaaccaggccatcaggaacac	13	11	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156746826	T	T	156746826	2	4	203	1	0	0	0	0	0	0	0	1	4171	825	29	4		4	CYFIP2	5	156746826	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	6331729	156746826	24168434	205	159717											
GABRA1	2554	broad.mit.edu	37	chr5	161277868	161277868	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttgggcctggatcctccttCtgagcacactgactggaaga	11	11	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161277868	T	T	161277868	2	4	203	1	0	0	0	0	0	0	0	1	6220	912	32	4		4	GABRA1	5	161277868	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	4531042	161277868	19637392	206	159718											
GABRG2	2566	broad.mit.edu	37	chr5	161578752	161578752	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagcttcttcggatgttttCcttcaaggtataatgttttt	7	6	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161578752	G	G	161578752	1	3	203	0	1	0	0	0	0	0	0	0	6232	855	30	4		4	GABRG2	5	161578752	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	300884	161578752	19336508	207	159719											
C5orf25	375484	broad.mit.edu	37	chr5	175722195	175722195	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctcacatcatccagaaaAtcttgctcagtggctctgag	9	11	5	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175722195	T	T	175722195	3	4	203	1	0	0	0	0	1	0	0	0	2311	101	4	5	298	5	C5orf25	5	175722195	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	14143443	175722195	5193065	208	159720											
MAML1	9794	broad.mit.edu	37	chr5	179192648	179192648	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcatttcctctgagcctgAataaagaactgaagcaggag	10	8	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179192648	T	T	179192648	3	4	203	1	0	0	0	0	1	0	0	0	9297	246	9	5	643	5	MAML1	5	179192648	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	3470453	179192648	1722612	209	159721											
OR2V2	285659	broad.mit.edu	37	chr5	180582569	180582569	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgctgtgtcttcatgcttctCttcccattctccatcatcgt	5	14	5	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180582569	G	G	180582569	2	3	203	1	0	0	0	0	0	0	0	1	11125	900	32	4		4	OR2V2	5	180582569	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	1389921	180582569	332691	210	159722											
GNB2L1	10399	broad.mit.edu	37	chr5	180668575	180668575	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagacaatctgccggttgtCagaggagaaggccacactca	12	10	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180668575	T	T	180668575	3	4	203	1	0	0	0	0	1	0	0	0	6582	826	29	4	631	4	GNB2L1	5	180668575	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	86006	180668575	246685	211	159723											
DUSP22	56940	broad.mit.edu	37	chr6	345916	345916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctccgcggtgagagctGccttgtacactggtacgtgt	14	12	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	345916	T	T	345916	3	4	203	1	0	0	0	0	1	0	0	0	4861	1319	46	3	269	3	DUSP22	6	345916	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08		345916	170769151	212	159724											
KIF13A	63971	broad.mit.edu	37	chr6	17831267	17831267	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcacagagacaggcaccCagattcaactacgaactgta	7	12	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17831267	A	A	17831267	1	1	203	0	1	0	0	0	0	0	0	0	8344	609	21	2		2	KIF13A	6	17831267	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	17485351	17831267	153283800	213	159725											
CDKAL1	54901	broad.mit.edu	37	chr6	21198357	21198357	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagaggcacttcagtattcTtgagttttctccaaagtgag	9	7	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21198357	C	C	21198357	1	2	203	0	1	0	0	0	0	0	0	0	3182	1624	56	5		5	CDKAL1	6	21198357	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	3367090	21198357	149916710	214	159726											
SLC17A4	10050	broad.mit.edu	37	chr6	25762199	25762200	+	Nonsense_Mutation	DNP	CG	AT	AT													gagagaaccaaaatgtctacCggaccagatgtcaaggctac							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	25762200	AT	AT	25762199	4	1	203	1	0	0	0	0	0	1	0	0	14532	639	23	1	11	1	SLC17A4	6	25762199	Nonsense_Mutation	DNP	CG	TCGA-73-4658-01A-01D-1753-08	4563842	25762199	145352868	215	159727											
HIST1H2BI	8346	broad.mit.edu	37	chr6	26273272	26273272	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggcggtgaccaaggcacaGaagaaggatggcaagaagcg	16	7	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26273272	C	C	26273272	3	2	203	1	0	0	0	0	1	0	0	0	7215	933	33	4	71	4	HIST1H2BI	6	26273272	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	511073	26273272	144841795	216	159728											
BTN3A3	10384	broad.mit.edu	37	chr6	26452057	26452057	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggctgtgaaaacttcacAtcagggagacattactggga	11	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26452057	C	C	26452057	2	2	203	1	0	0	0	0	0	0	0	1	1574	204	8	5		5	BTN3A3	6	26452057	Silent	SNP	A	TCGA-73-4658-01A-01D-1753-08	178785	26452057	144663010	217	159729											
BTN2A1	11120	broad.mit.edu	37	chr6	26468505	26468505	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accgggccgtgtcctcccctGataggattctccctttgaag	10	14	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26468505	A	A	26468505	3	1	203	1	0	0	0	0	1	0	0	0	1570	1290	45	4	1365	4	BTN2A1	6	26468505	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	16448	26468505	144646562	218	159730											
OR10C1	442194	broad.mit.edu	37	chr6	29407927	29407927	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcaatttcctcattgtGgtgctggtctccactgatgc	11	11	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29407927	A	A	29407927	2	1	203	1	0	0	0	0	0	0	0	1	10992	1335	47	4		4	OR10C1	6	29407927	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	2939422	29407927	141707140	219	159731											
C6orf15	29113	broad.mit.edu	37	chr6	31079340	31079340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagctgcctcctggataccGattaatatttccccagctgc	7	15	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31079340	A	A	31079340	3	1	203	1	0	0	0	0	1	0	0	0	2359	1057	37	4	185	4	C6orf15	6	31079340	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1671413	31079340	140035727	220	159732											
MSH5	4439	broad.mit.edu	37	chr6	31726640	31726640	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attccttcatgcagtgtcatCtacatccctctggtgagggc	9	12	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31726640	G	G	31726640	3	3	203	1	0	0	0	0	1	0	0	0	9967	903	32	4	1419	4	MSH5	6	31726640	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	647300	31726640	139388427	221	159733											
FKBPL	63943	broad.mit.edu	37	chr6	32097284	32097284	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaccagagatcagaagcttGaagggcctctggcatctgac	12	10	3	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32097284	A	A	32097284	4	1	203	1	0	0	0	0	0	1	0	0	5973	1299	45	4	779	4	FKBPL	6	32097284	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	370644	32097284	139017783	222	159734											
TMEM63B	55362	broad.mit.edu	37	chr6	44115861	44115861	+	Intron	DEL	A	-	-													cagagcgagacgctgtttccAaaaaaaaaaaaatgcttaga							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44115861	-	-	44115861	6	5	203	0	1	1	0	1	0	0	0	0	16314	145	5	0		0	TMEM63B	6	44115861	Intron	DEL	A	TCGA-73-4658-01A-01D-1753-08	12018577	44115861	126999206	223	159735											
GPR116	221395	broad.mit.edu	37	chr6	46826549	46826549	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccacagcttccacaactaGacaggctgccaagctcaaga	7	15	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46826549	C	C	46826549	3	2	203	1	0	0	0	0	1	0	0	0	6698	933	33	4	969	4	GPR116	6	46826549	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2710688	46826549	124288518	224	159736											
PKHD1	5314	broad.mit.edu	37	chr6	51890718	51890718	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactactggtgttgctgccGcttcatacatgaaggtgaag	12	8	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51890718	A	A	51890718	3	1	203	1	0	0	0	0	1	0	0	0	12066	1087	38	4	8517	4	PKHD1	6	51890718	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	5064169	51890718	119224349	225	159737											
HCRTR2	3062	broad.mit.edu	37	chr6	55145278	55145278	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttccataagccacaattGtaaccaaggatgaggaatca	7	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55145278	A	A	55145278	1	1	203	0	1	0	0	0	0	0	0	0	7069	1392	48	4		4	HCRTR2	6	55145278	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3254560	55145278	115969789	226	159738											
COL21A1	81578	broad.mit.edu	37	chr6	55933838	55933838	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgtatctcctaaccaatGcataccttttttccttgaat	3	11	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55933838	A	A	55933838	1	1	203	0	1	0	0	0	0	0	0	0	3712	1334	46	4		4	COL21A1	6	55933838	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	788560	55933838	115181229	227	159739											
KCNQ5	56479	broad.mit.edu	37	chr6	73765166	73765166	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagatctgcaggtgctcctAtgatgtcccaccacctccga	9	14	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73765166	T	T	73765166	1	4	203	0	1	0	0	0	0	0	0	0	8156	464	16	5		5	KCNQ5	6	73765166	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	17831328	73765166	97349901	228	159740											
SNAP91	9892	broad.mit.edu	37	chr6	84371233	84371233	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacataccctttcttcaccCtggcaaaatcaaaggccatc	4	14	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84371233	T	T	84371233	3	4	203	1	0	0	0	0	1	0	0	0	14947	681	24	4	2379	4	SNAP91	6	84371233	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	10606067	84371233	86743834	229	159741											
CASP8AP2	9994	broad.mit.edu	37	chr6	90581002	90581002	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	actaaatacaattttttcctCctcagaaatgatgaccggga	6	9	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90581002	T	T	90581002	1	4	203	0	1	0	0	0	0	0	0	0	2704	870	30	4		4	CASP8AP2	6	90581002	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	6209769	90581002	80534065	230	159742											
EPHA7	2045	broad.mit.edu	37	chr6	94067941	94067941	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaaatgagtggaagggatTggaaagtcctttactttcat	10	5	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94067941	A	A	94067941	1	1	203	0	1	0	0	0	0	0	0	0	5214	1827	63	5		5	EPHA7	6	94067941	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	3486939	94067941	77047126	231	159743											
SMPD2	6610	broad.mit.edu	37	chr6	109762593	109762593	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagcaagcaccgggccgaCcgcatgaggcgcctgggaga	16	12	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109762593	A	A	109762593	3	1	203	1	0	0	0	0	1	0	0	0	14919	506	18	3	90	3	SMPD2	6	109762593	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	15694652	109762593	61352474	232	159744											
NKAIN2	154215	broad.mit.edu	37	chr6	124979454	124979454	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccccagaagaccatcgCtacatcacggtctcagggtg	12	13	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124979454	A	A	124979454	2	1	203	1	0	0	0	0	0	0	0	1	10531	784	28	3		3	NKAIN2	6	124979454	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	15216861	124979454	46135613	233	159745											
SAMD3	154075	broad.mit.edu	37	chr6	130530634	130530634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtcttaaagttggtacCcccacctctgtttcaatact	5	12	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130530634	A	A	130530634	1	1	203	0	1	0	0	0	0	0	0	0	13931	638	22	2		2	SAMD3	6	130530634	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	5551180	130530634	40584433	234	159746											
TAAR5	9038	broad.mit.edu	37	chr6	132910535	132910535	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccccgaagaaccagcagctCtccactgagcgaatggtgct	10	14	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132910535	G	G	132910535	3	3	203	1	0	0	0	0	1	0	0	0	15610	912	32	4	726	4	TAAR5	6	132910535	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2379901	132910535	38204532	235	159747											
MAP7	9053	broad.mit.edu	37	chr6	136709490	136709490	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaaacaccctgttactttCaggaaaataaagactaattt	6	7	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136709490	T	T	136709490	1	4	203	0	1	0	0	0	0	0	0	0	9358	841	29	4		4	MAP7	6	136709490	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3798955	136709490	34405577	236	159748											
SYNE1	23345	broad.mit.edu	37	chr6	152473324	152473324	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagaaatcagcgaaggactCtcagtagtggctcctggttt	12	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152473324	G	G	152473324	1	3	203	0	1	0	0	0	0	0	0	0	15564	928	32	4		4	SYNE1	6	152473324	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	15763834	152473324	18641743	237	159749											
TAGAP	117289	broad.mit.edu	37	chr6	159463125	159463125	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctacctggatgggtctgggGagtgtgtcactgtcaccgca	14	11	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159463125	T	T	159463125	2	4	203	1	0	0	0	0	0	0	0	1	15656	1161	41	3		3	TAGAP	6	159463125	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	6989801	159463125	11651942	238	159750											
FNDC1	84624	broad.mit.edu	37	chr6	159654341	159654341	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagaaccccaaatccacaGgggcagatacacatcctcag	8	14	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159654341	T	T	159654341	3	4	203	1	0	0	0	0	1	0	0	0	6026	1000	35	2	2839	2	FNDC1	6	159654341	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	191216	159654341	11460726	239	159751											
SUN1	23353	broad.mit.edu	37	chr7	892283	892283	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtttttagtcttgctcAtcccactcttccttttacta	4	12	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	892283	G	G	892283	3	3	203	1	0	0	0	0	1	0	0	0	15509	217	8	5	1102	5	SUN1	7	892283	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08		892283	158246380	240	159752											
FOXK1	221937	broad.mit.edu	37	chr7	4798715	4798715	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgcccacacaccccgggctGatgtcccctcgctccggcgg	11	20	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4798715	A	A	4798715	2	1	203	1	0	0	0	0	0	0	0	1	6074	1277	45	4		4	FOXK1	7	4798715	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	3906432	4798715	154339948	241	159753											
PMS2	5395	broad.mit.edu	37	chr7	6029467	6029467	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggctgctgactgacatttaGcttgttgacatcactatcaa	8	9	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6029467	C	C	6029467	3	2	203	1	0	0	0	0	1	0	0	0	12238	962	34	4	1504	4	PMS2	7	6029467	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1230752	6029467	153109196	242	159754											
ABCB5	340273	broad.mit.edu	37	chr7	20698213	20698213	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caattgctcgtgccttagttCgaaaccccaagattctgatt	7	11	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20698213	T	T	20698213	4	4	203	1	0	0	0	0	0	1	0	0	44	876	31	4	1671	4	ABCB5	7	20698213	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	14668746	20698213	138440450	243	159755											
HOXA1	3198	broad.mit.edu	37	chr7	27135384	27135384	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccactaggaagcggtcgtCgccgccgcaactgttggcgc	14	15	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27135384	G	G	27135384	3	3	203	1	0	0	0	0	1	0	0	0	7355	884	31	4	867	4	HOXA1	7	27135384	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	6437171	27135384	132003279	244	159756											
NT5C3	51251	broad.mit.edu	37	chr7	33057107	33057107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattgggatgataaacacCagcttgacgaataacttcct	8	9	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33057107	A	A	33057107	3	1	203	1	0	0	0	0	1	0	0	0	10783	594	21	2	370	2	NT5C3	7	33057107	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	5921723	33057107	126081556	245	159757											
TBX20	57057	broad.mit.edu	37	chr7	35242089	35242089	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaatggcgtagtccttgaaTggcagcatagggcccctgct	14	10	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35242089	A	A	35242089	3	1	203	1	0	0	0	0	1	0	0	0	15778	1464	51	5	49	5	TBX20	7	35242089	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	2184982	35242089	123896574	246	159758											
AMPH	273	broad.mit.edu	37	chr7	38462155	38462166	+	Intron	DEL	TATCTATCTATC	-	-													atcaattgtgtctgcctacgTatctatctatctatctatct							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38462166	-	-	38462155	6	5	203	0	1	1	0	1	0	0	0	0	588	1653	57	0		0	AMPH	7	38462155	Intron	DEL	TATCTATCTATC	TCGA-73-4658-01A-01D-1753-08	3220066	38462155	120676508	247	159759											
AMPH	273	broad.mit.edu	37	chr7	38514911	38514911	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaaaggaacatgtgcaacCcatagagaaacatttttacc	6	9	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38514911	A	A	38514911	1	1	203	0	1	0	0	0	0	0	0	0	588	638	22	2		2	AMPH	7	38514911	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	52756	38514911	120623752	248	159760											
POU6F2	11281	broad.mit.edu	37	chr7	39246901	39246901	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtacttcttcgggaactttCtgaccctacttaagtggaaa	9	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39246901	G	G	39246901	1	3	203	0	1	0	0	0	0	0	0	0	12381	928	32	4		4	POU6F2	7	39246901	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	731990	39246901	119891762	249	159761											
C7orf36	57002	broad.mit.edu	37	chr7	39610121	39610121	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttaggaaggttatagagatgGaatagatgctggcaaagcag	14	3	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39610121	C	C	39610121	3	2	203	1	0	0	0	0	1	0	0	0	2415	1174	41	4	152	4	C7orf36	7	39610121	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	363220	39610121	119528542	250	159762											
ADCY1	107	broad.mit.edu	37	chr7	45650011	45650011	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcctcctgccccggaacGttgccatggagatgaaggag	14	11	0	3	rs80190930		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45650011	A	A	45650011	3	1	203	1	0	0	0	0	1	0	0	0	292	1145	40	4	833	4	ADCY1	7	45650011	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	6039890	45650011	113488652	251	159763											
VSTM2A	222008	broad.mit.edu	37	chr7	54614735	54614735	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgggcccaggctcgggacGcacagcccttccctgtcccc	12	20	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54614735	A	A	54614735	1	1	203	0	1	0	0	0	0	0	0	0	17356	1102	38	4		4	VSTM2A	7	54614735	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	8964724	54614735	104523928	252	159764											
MRPS17	51373	broad.mit.edu	37	chr7	56022897	56022897	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtggaagaaggatctaaaGggaaaaactgacatgtttat	12	3	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56022897	A	A	56022897	1	1	203	0	1	0	0	0	0	0	0	0	9921	1015	35	4		4	MRPS17	7	56022897	3'UTR	SNP	G	TCGA-73-4658-01A-01D-1753-08	1408162	56022897	103115766	253	159765											
AUTS2	26053	broad.mit.edu	37	chr7	69583230	69583231	+	Intron	DEL	GT	-	-													gctcagtgatgtaagtttaaGtaaaaaaaaaaaaaaaaaaa							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69583231	-	-	69583230	6	5	203	0	1	1	0	1	0	0	0	0	1230	1044	36	0		0	AUTS2	7	69583230	Intron	DEL	GT	TCGA-73-4658-01A-01D-1753-08	13560333	69583230	89555433	254	159766											
TYW1B	441250	broad.mit.edu	37	chr7	72242363	72242363	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattagagagagacttcattCtaggtatcaaatgagaatgc	9	5	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72242363	T	T	72242363	1	4	203	0	1	0	0	0	0	0	0	0	16945	928	32	4		4	TYW1B	7	72242363	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	2659133	72242363	86896300	255	159767											
PTPN12	5782	broad.mit.edu	37	chr7	77265123	77265123	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgtaagatcggaatggaGtgaacttcaaagtcaggaac	11	7	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77265123	C	C	77265123	3	2	203	1	0	0	0	0	1	0	0	0	12887	1029	36	4	2157	4	PTPN12	7	77265123	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	5022760	77265123	81873540	256	159768											
ADAM22	53616	broad.mit.edu	37	chr7	87772294	87772294	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gttttcagacattcacaaatGagaaagatgagttgaaccca	8	7	2	5			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87772294	C	C	87772294	1	2	203	0	1	0	0	0	0	0	0	0	244	1305	45	4		4	ADAM22	7	87772294	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	10507171	87772294	71366369	257	159769											
STEAP4	79689	broad.mit.edu	37	chr7	87913242	87913242	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggtactctgcattagattCtggatattgattgattttga	9	4	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87913242	G	G	87913242	3	3	203	1	0	0	0	0	1	0	0	0	15398	922	32	4	1052	4	STEAP4	7	87913242	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	140948	87913242	71225421	258	159770											
STEAP1	26872	broad.mit.edu	37	chr7	89793973	89793973	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctgccatgcttgaggaaGaagatactgaagattagaca	10	7	0	6			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89793973	A	A	89793973	2	1	203	1	0	0	0	0	0	0	0	1	15395	933	33	4		4	STEAP1	7	89793973	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	1880731	89793973	69344690	259	159771											
GTPBP10	85865	broad.mit.edu	37	chr7	89984473	89984473	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtaaattacttacaaatttCttaccattgaaaggccagaa	6	7	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89984473	G	G	89984473	3	3	203	1	0	0	0	0	1	0	0	0	6944	912	32	4	407	4	GTPBP10	7	89984473	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	190500	89984473	69154190	260	159772											
COL1A2	1278	broad.mit.edu	37	chr7	94057585	94057585	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatgagaagtttcatgatctGaatgttattttcttaaaagg	8	3	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94057585	C	C	94057585	1	2	203	0	1	0	0	0	0	0	0	0	3710	1305	45	4		4	COL1A2	7	94057585	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	4073112	94057585	65081078	261	159773											
PLOD3	8985	broad.mit.edu	37	chr7	100850884	100850885	+	Missense_Mutation	DNP	CT	AC	AC													tgtggtaaccgggaaacaggCtctcggtcatggggcccaca							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	100850885	AC	AC	100850884	3	1	203	1	0	0	0	0	1	0	0	0	12198	797	28	3	318	3	PLOD3	7	100850884	Missense_Mutation	DNP	CT	TCGA-73-4658-01A-01D-1753-08	6793299	100850884	58287779	262	159774											
MLL5	55904	broad.mit.edu	37	chr7	104747597	104747597	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaaattttcaattctaattCtttctttatatacagaatat	1	5	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104747597	G	G	104747597	1	3	203	0	1	0	0	0	0	0	0	0	9717	928	32	4		4	MLL5	7	104747597	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3896713	104747597	54391066	263	159775											
NRCAM	4897	broad.mit.edu	37	chr7	107880462	107880462	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaagagaatcaggggcactCtgcccgcagataagcgcttc	13	11	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107880462	T	T	107880462	3	4	203	1	0	0	0	0	1	0	0	0	10739	913	32	4	4017	4	NRCAM	7	107880462	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3132865	107880462	51258201	264	159776											
C7orf60	154743	broad.mit.edu	37	chr7	112579614	112579614	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggttgggggtgatgaggcctCcccttcctccctcactcagc	12	15	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112579614	T	T	112579614	1	4	203	0	1	0	0	0	0	0	0	0	2432	870	30	4		4	C7orf60	7	112579614	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	4699152	112579614	46559049	265	159777											
GPR85	54329	broad.mit.edu	37	chr7	112723882	112723882	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggccaccaggtaggggcCccacaaggttagaaacagaa	12	11	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112723882	A	A	112723882	3	1	203	1	0	0	0	0	1	0	0	0	6780	623	22	2	221	2	GPR85	7	112723882	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	144268	112723882	46414781	266	159778											
CTTNBP2	83992	broad.mit.edu	37	chr7	117432597	117432597	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttccatttctgtgcttcttCgtttctcagcggagagttcc	8	12	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117432597	T	T	117432597	3	4	203	1	0	0	0	0	1	0	0	0	4079	884	31	4	4418	4	CTTNBP2	7	117432597	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4708715	117432597	41706066	267	159779											
ANKRD7	56311	broad.mit.edu	37	chr7	117876107	117876107	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttttcaggatgggtatactCcactattagttgccgttatt	8	7	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117876107	T	T	117876107	3	4	203	1	0	0	0	0	1	0	0	0	686	855	30	4	495	4	ANKRD7	7	117876107	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	443510	117876107	41262556	268	159780											
C7orf58	79974	broad.mit.edu	37	chr7	120906538	120906538	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaagacacaaaacccacAaagtactgatgttctgctag	7	9	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120906538	G	G	120906538	1	3	203	0	1	0	0	0	0	0	0	0	2430	145	5	5		5	C7orf58	7	120906538	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	3030431	120906538	38232125	269	159781											
RNF133	168433	broad.mit.edu	37	chr7	122338097	122338097	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacatttgcaaatggggcaTgtcccatggggtaaaatcca	10	9	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122338097	A	A	122338097	2	1	203	1	0	0	0	0	0	0	0	1	13550	1451	51	5		5	RNF133	7	122338097	Silent	SNP	T	TCGA-73-4658-01A-01D-1753-08	1431559	122338097	36800566	270	159782											
WASL	8976	broad.mit.edu	37	chr7	123332669	123332669	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacacagatggaggtggtGgtggaggccctgaaggtgct	17	8	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123332669	A	A	123332669	3	1	203	1	0	0	0	0	1	0	0	0	17383	1348	47	4	450	4	WASL	7	123332669	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	994572	123332669	35805994	271	159783											
MKLN1	4289	broad.mit.edu	37	chr7	131113930	131113930	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctcagacttttcatacatCtatattacagaaggggcgta	7	8	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131113930	T	T	131113930	1	4	203	0	1	0	0	0	0	0	0	0	9696	928	32	4		4	MKLN1	7	131113930	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	7781261	131113930	28024733	272	159784											
EXOC4	60412	broad.mit.edu	37	chr7	133602302	133602302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgaataccaggcatcatGctacagtgtctcttttctat	6	10	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133602302	T	T	133602302	1	4	203	0	1	0	0	0	0	0	0	0	5348	1334	46	3		3	EXOC4	7	133602302	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	2488372	133602302	25536361	273	159785											
CNOT4	4850	broad.mit.edu	37	chr7	135080502	135080502	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggatggcgaaaattgtctGagaataacgactgtgactct	12	6	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135080502	C	C	135080502	4	2	203	1	0	0	0	0	0	1	0	0	3653	1294	45	4	1032	4	CNOT4	7	135080502	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1478200	135080502	24058161	274	159786											
TRIM24	8805	broad.mit.edu	37	chr7	138189108	138189108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagataacttttttgtgaaGgacactactgaggttcccag	9	7	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138189108	T	T	138189108	3	4	203	1	0	0	0	0	1	0	0	0	16622	991	35	2	444	2	TRIM24	7	138189108	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3108606	138189108	20949555	275	159787											
SVOPL	136306	broad.mit.edu	37	chr7	138347839	138347839	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttccagcggccatatctgtCagccaggaggccaaagagga	12	12	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138347839	T	T	138347839	3	4	203	1	0	0	0	0	1	0	0	0	15542	826	29	4	1201	4	SVOPL	7	138347839	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	158731	138347839	20790824	276	159788											
NOBOX	135935	broad.mit.edu	37	chr7	144096961	144096961	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattctggaaccacacctatGgggggaaaggtgcttgaaga	14	7	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144096961	T	T	144096961	1	4	203	0	1	0	0	0	0	0	0	0	10607	1363	47	2		2	NOBOX	7	144096961	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	5749122	144096961	15041702	277	159789											
ZNF786	136051	broad.mit.edu	37	chr7	148769014	148769014	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcgggaggcggtggctggGatgggtcagctcgtgtcgga	21	8	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148769014	C	C	148769014	3	2	203	1	0	0	0	0	1	0	0	0	18287	1174	41	4	1502	4	ZNF786	7	148769014	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4672053	148769014	10369649	278	159790											
SSPO	23145	broad.mit.edu	37	chr7	149492766	149492766	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccaaggtatcacccgcCcaaggccgatggggccagca	12	16	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149492766	T	T	149492766	1	4	203	0	1	0	0	0	0	0	0	0	15307	638	22	4		4	SSPO	7	149492766	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	723752	149492766	9645897	279	159791											
SSPO	23145	broad.mit.edu	37	chr7	149519225	149519225	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatggccaaggccgacccCacctgcaacagcaccttcct	8	18	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149519225	T	T	149519225	2	4	203	1	0	0	0	0	0	0	0	1	15307	581	21	4		4	SSPO	7	149519225	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	26459	149519225	9619438	280	159792											
NOS3	4846	broad.mit.edu	37	chr7	150698285	150698285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgaggtctgtgggtctGgtttgagcctctccccctct	14	12	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150698285	T	T	150698285	1	4	203	0	1	0	0	0	0	0	0	0	10639	1363	47	2		2	NOS3	7	150698285	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1179060	150698285	8440378	281	159793											
RBM33	155435	broad.mit.edu	37	chr7	155457829	155457829	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatttgcattgtgtctattTtaacttagtaaaactgactt	5	5	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155457829	A	A	155457829	1	1	203	0	1	0	0	0	0	0	0	0	13238	1856	64	5		5	RBM33	7	155457829	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	4759544	155457829	3680834	282	159794											
UBE3C	9690	broad.mit.edu	37	chr7	157000687	157000687	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaatgtacaaacttttgtCttgactcgttgcagaggaat	8	6	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157000687	G	G	157000687	1	3	203	0	1	0	0	0	0	0	0	0	17007	928	32	4		4	UBE3C	7	157000687	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1542858	157000687	2137976	283	159795											
CSMD1	64478	broad.mit.edu	37	chr8	3076739	3076739	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caataaaaacagtcctgataCaaattaattcccactcaaat	2	10	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3076739	A	A	3076739	1	1	203	0	1	0	0	0	0	0	0	0	3978	493	17	3		3	CSMD1	8	3076739	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08		3076739	143287283	284	159796											
BMP1	649	broad.mit.edu	37	chr8	22067158	22067158	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgactacatggagctcttcGacggctacgacagcacagcc	10	13	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22067158	A	A	22067158	3	1	203	1	0	0	0	0	1	0	0	0	1462	1058	37	4	2940	4	BMP1	8	22067158	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	18990419	22067158	124296864	285	159797											
PPP2R2A	5520	broad.mit.edu	37	chr8	25292809	25292809	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatagttataattcctgtctCaaaggctctttgagactgtt	8	7	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25292809	G	G	25292809	1	3	203	0	1	0	0	0	0	0	0	0	12485	841	29	4		4	PPP2R2A	8	25292809	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3225651	25292809	121071213	286	159798											
BNIP3L	665	broad.mit.edu	37	chr8	26248666	26248666	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatttggtttgaggagagtCagaattcttatctggattca	10	5	4	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26248666	T	T	26248666	1	4	203	0	1	0	0	0	0	0	0	0	1485	841	29	4		4	BNIP3L	8	26248666	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	955857	26248666	120115356	287	159799											
CHRNA2	1135	broad.mit.edu	37	chr8	27328547	27328547	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaggctgagctttgtgaagGacaggaacacaggacaggag	15	7	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27328547	T	T	27328547	3	4	203	1	0	0	0	0	1	0	0	0	3414	1174	41	3	1584	3	CHRNA2	8	27328547	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1079881	27328547	119035475	288	159800											
WRN	7486	broad.mit.edu	37	chr8	31001158	31001158	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtacagagttccatatttCtatgttctatacttgcttta	6	7	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31001158	G	G	31001158	1	3	203	0	1	0	0	0	0	0	0	0	17529	928	32	4		4	WRN	8	31001158	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3672611	31001158	115362864	289	159801											
WRN	7486	broad.mit.edu	37	chr8	31024633	31024633	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agatccttaaacatggtcctGacagcggacttcaaccttca	7	12	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31024633	C	C	31024633	3	2	203	1	0	0	0	0	1	0	0	0	17529	1290	45	4	4208	4	WRN	8	31024633	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	23475	31024633	115339389	290	159802											
GOT1L1	137362	broad.mit.edu	37	chr8	37792025	37792025	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaaaatcatgacaaggtctCagatctcgagactggccatc	8	11	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37792025	G	G	37792025	1	3	203	0	1	0	0	0	0	0	0	0	6644	841	29	4		4	GOT1L1	8	37792025	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	6767392	37792025	108571997	291	159803											
PRKDC	5591	broad.mit.edu	37	chr8	48817449	48817449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatatagcttctagtaaggCaacagtatcctgactttcaa	6	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48817449	A	A	48817449	3	1	203	1	0	0	0	0	1	0	0	0	12627	710	25	3	9607	3	PRKDC	8	48817449	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	11025424	48817449	97546573	292	159804											
TOX	9760	broad.mit.edu	37	chr8	59750834	59750834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagtttttggttttttccCcatatcagaggcaggccgct	12	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59750834	A	A	59750834	3	1	203	1	0	0	0	0	1	0	0	0	16501	623	22	2	870	2	TOX	8	59750834	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	10933385	59750834	86613188	293	159805											
CLVS1	157807	broad.mit.edu	37	chr8	62212729	62212729	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaaaacttcaaggcagatGatcccggcattaagagggct	10	9	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62212729	A	A	62212729	3	1	203	1	0	0	0	0	1	0	0	0	3603	1290	45	4	345	4	CLVS1	8	62212729	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2461895	62212729	84151293	294	159806											
ASPH	444	broad.mit.edu	37	chr8	62559457	62559457	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actatgacaatgaacaaagtGacactggcaacatacaactg	7	9	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62559457	A	A	62559457	1	1	203	0	1	0	0	0	0	0	0	0	1057	1305	45	4		4	ASPH	8	62559457	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	346728	62559457	83804565	295	159807											
PREX2	80243	broad.mit.edu	37	chr8	69013728	69013728	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagttcagttcacctacttGagtttggggaagattccatg	11	7	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69013728	C	C	69013728	1	2	203	0	1	0	0	0	0	0	0	0	12583	1305	45	4		4	PREX2	8	69013728	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	6454271	69013728	77350294	296	159808											
CA3	761	broad.mit.edu	37	chr8	86356314	86356314	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacttttaaagaagccctgAagcagcgcgatgggatcgct	11	10	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86356314	G	G	86356314	3	3	203	1	0	0	0	0	1	0	0	0	2543	247	9	5	417	5	CA3	8	86356314	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	17342586	86356314	60007708	297	159809											
CDH17	1015	broad.mit.edu	37	chr8	95158513	95158513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagatgctagaaagacgaCaagcttttagaatcaaagac	9	7	1	5			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95158513	A	A	95158513	1	1	203	0	1	0	0	0	0	0	0	0	3132	493	17	3		3	CDH17	8	95158513	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	8802199	95158513	51205509	298	159810											
KIAA1429	25962	broad.mit.edu	37	chr8	95518698	95518698	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaatgaaaaaattaaatctGagagtatattaaattagaca	6	2	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95518698	A	A	95518698	1	1	203	0	1	0	0	0	0	0	0	0	8301	1305	45	4		4	KIAA1429	8	95518698	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	360185	95518698	50845324	299	159811											
RGS22	26166	broad.mit.edu	37	chr8	100994191	100994191	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctaaatacatatggtcCtaactccttccggtgttcaa	5	12	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100994191	T	T	100994191	3	4	203	1	0	0	0	0	1	0	0	0	13414	690	24	4	484	4	RGS22	8	100994191	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	5475493	100994191	45369831	300	159812											
DCAF13	25879	broad.mit.edu	37	chr8	104427647	104427647	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcctagcggacacctcGtggagtccggccggaagagc	14	13	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104427647	T	T	104427647	2	4	203	1	0	0	0	0	0	0	0	1	4299	1132	40	3		3	DCAF13	8	104427647	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	3433456	104427647	41936375	301	159813											
RIMS2	9699	broad.mit.edu	37	chr8	104955058	104955058	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agccacattggtacaaacttCagacgcatgatgtctcttca	7	11	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104955058	T	T	104955058	4	4	203	1	0	0	0	0	0	1	0	0	13479	827	29	4	2785	4	RIMS2	8	104955058	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	527411	104955058	41408964	302	159814											
LRP12	29967	broad.mit.edu	37	chr8	105502865	105502865	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aataataaatggatattgctCcaacttgtatacaatctccc	4	9	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105502865	T	T	105502865	1	4	203	0	1	0	0	0	0	0	0	0	9041	870	30	4		4	LRP12	8	105502865	3'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	547807	105502865	40861157	303	159815											
CSMD3	114788	broad.mit.edu	37	chr8	113484921	113484921	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccttctgaacctgttgaaCgacttccacagggcgctagg	11	12	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113484921	G	G	113484921	3	3	203	1	0	0	0	0	1	0	0	0	3980	536	19	4	5989	4	CSMD3	8	113484921	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	7982056	113484921	32879101	304	159816											
CSMD3	114788	broad.mit.edu	37	chr8	113697996	113697996	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattatgaaatacaataaaTattcaaaaataatatttcat	2	3	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113697996	C	C	113697996	1	2	203	0	1	0	0	0	0	0	0	0	3980	1421	49	5		5	CSMD3	8	113697996	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	213075	113697996	32666026	305	159817											
MTBP	27085	broad.mit.edu	37	chr8	121463151	121463151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataattatgtaatatgtttcAaaagttatggtctgtaagta	7	2	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121463151	G	G	121463151	1	3	203	0	1	0	0	0	0	0	0	0	10006	145	5	5		5	MTBP	8	121463151	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	7765155	121463151	24900871	306	159818											
ADCY8	114	broad.mit.edu	37	chr8	132002737	132002737	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggtctgacaggtaactgaTgaagattccagctgtgttca	11	9	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132002737	A	A	132002737	3	1	203	1	0	0	0	0	1	0	0	0	300	1464	51	5	2811	5	ADCY8	8	132002737	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	10539586	132002737	14361285	307	159819											
PLEC	5339	broad.mit.edu	37	chr8	145001523	145001523	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgggtgatggtgtggtcaGagccgtggccgcagggcacg	19	10	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145001523	C	C	145001523	1	2	203	0	1	0	0	0	0	0	0	0	12147	957	33	4		4	PLEC	8	145001523	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	12998786	145001523	1362499	308	159820											
GPAA1	8733	broad.mit.edu	37	chr8	145140004	145140004	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccttgaggagcccggggGtgcccctggccccagtgtac	17	14	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145140004	A	A	145140004	3	1	203	1	0	0	0	0	1	0	0	0	6652	1261	44	4	1257	4	GPAA1	8	145140004	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	138481	145140004	1224018	309	159821											
C9orf68	55064	broad.mit.edu	37	chr9	4629136	4629136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacattctctgatggctgtCcttgtagaaaactctatttt	6	9	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4629136	A	A	4629136	3	1	203	1	0	0	0	0	1	0	0	0	2517	854	30	3	822	3	C9orf68	9	4629136	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08		4629136	136584295	310	159822											
PTPRD	5789	broad.mit.edu	37	chr9	8389207	8389207	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgagggaaaatttttaaaagGaaagaggtggatacttattc	11	2	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8389207	A	A	8389207	1	1	203	0	1	0	0	0	0	0	0	0	12907	1189	41	4		4	PTPRD	9	8389207	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3760071	8389207	132824224	311	159823											
SLC24A2	25769	broad.mit.edu	37	chr9	19520910	19520910	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctacagtgatgtcaaaaAtgttgcttccaacagagctg	8	10	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19520910	G	G	19520910	3	3	203	1	0	0	0	0	1	0	0	0	14580	101	4	5	275	5	SLC24A2	9	19520910	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	11131703	19520910	121692521	312	159824											
FAM75A6	389730	broad.mit.edu	37	chr9	43629338	43629338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgggagacatgatgacGtacggagacaagatgacgcg	14	8	0	6			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43629338	T	T	43629338	1	4	203	0	1	0	0	0	0	0	0	0	5674	1160	40	3		3	FAM75A6	9	43629338	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	24108428	43629338	97584093	313	159825											
FAM22F	54754	broad.mit.edu	37	chr9	97082700	97082700	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaggggggatctcctcaggGaccttggtctccgctggcct	14	13	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97082700	T	T	97082700	2	4	203	1	0	0	0	0	0	0	0	1	5592	1161	41	3		3	FAM22F	9	97082700	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	53453362	97082700	44130731	314	159826											
KIAA1529	57653	broad.mit.edu	37	chr9	100092805	100092805	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagcagaaaaaatctcCactgcatgctaagatggatg	12	8	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100092805	T	T	100092805	3	4	203	1	0	0	0	0	1	0	0	0	8310	594	21	4	2661	4	KIAA1529	9	100092805	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3010105	100092805	41120626	315	159827											
SVEP1	79987	broad.mit.edu	37	chr9	113198749	113198749	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaatccctctcctttttTgtcttgctcttgccccagaa	6	14	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113198749	G	G	113198749	3	3	203	1	0	0	0	0	1	0	0	0	15538	1821	63	5	6124	5	SVEP1	9	113198749	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	13105944	113198749	28014682	316	159828											
PAPPA	5069	broad.mit.edu	37	chr9	119116091	119116091	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtaagcctcctggaacttGagattgataccatggtccct	10	10	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119116091	C	C	119116091	1	2	203	0	1	0	0	0	0	0	0	0	11526	1305	45	4		4	PAPPA	9	119116091	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	5917342	119116091	22097340	317	159829											
FPGS	2356	broad.mit.edu	37	chr9	130567002	130567002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcttgtggggggatgtGgtgtctgtgtcccaatggac	17	7	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130567002	T	T	130567002	1	4	203	0	1	0	0	0	0	0	0	0	6096	1363	47	2		2	FPGS	9	130567002	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	11450911	130567002	10646429	318	159830											
GOLGA2	2801	broad.mit.edu	37	chr9	131038338	131038338	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggaggcgtaaccagggCgatactggagcgcagaatgg	17	8	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131038338	A	A	131038338	1	1	203	0	1	0	0	0	0	0	0	0	6616	783	27	3		3	GOLGA2	9	131038338	5'Flank	SNP	C	TCGA-73-4658-01A-01D-1753-08	471336	131038338	10175093	319	159831											
SPTAN1	6709	broad.mit.edu	37	chr9	131337474	131337474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctctcttatggtccctgaAtaggaagcaattgttacttc	9	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131337474	G	G	131337474	1	3	203	0	1	0	0	0	0	0	0	0	15235	116	4	5		5	SPTAN1	9	131337474	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	299136	131337474	9875957	320	159832											
NUP214	8021	broad.mit.edu	37	chr9	134049375	134049375	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttttttttttatcaacagtGaaaattacttagcttttggg	6	4	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134049375	C	C	134049375	1	2	203	0	1	0	0	0	0	0	0	0	10857	1305	45	4		4	NUP214	9	134049375	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	2711901	134049375	7164056	321	159833											
TMEM8C	389827	broad.mit.edu	37	chr9	136380688	136380688	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctgctgggtgtagacgctCttgtctgggtacaggccctt	13	10	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136380688	G	G	136380688	3	3	203	1	0	0	0	0	1	0	0	0	16339	912	32	4	232	4	TMEM8C	9	136380688	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2331313	136380688	4832743	322	159834											
CACNA1B	774	broad.mit.edu	37	chr9	140880937	140880937	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccatcatcagcctgctcttCttgctcttcctgttcattgt	5	14	6	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140880937	A	A	140880937	3	1	203	1	0	0	0	0	1	0	0	0	2565	912	32	3	1896	3	CACNA1B	9	140880937	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4500249	140880937	332494	323	159835											
DIP2C	22982	broad.mit.edu	37	chr10	323340	323340	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcaggtgcatgcgctgcttCtccccacgggagttgatggg	15	12	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	323340	G	G	323340	3	3	203	1	0	0	0	0	1	0	0	0	4569	912	32	4	78	4	DIP2C	10	323340	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08		323340	135211407	324	159836											
ADARB2	105	broad.mit.edu	37	chr10	1598981	1598981	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccagatcttcctgcccctGaccacagctctgtccctgga	7	19	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1598981	T	T	1598981	1	4	203	0	1	0	0	0	0	0	0	0	283	1305	45	3		3	ADARB2	10	1598981	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1275641	1598981	133935766	325	159837											
AKR1E2	83592	broad.mit.edu	37	chr10	4889810	4889810	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtcatcacagcgccagGgcagctgtgcctgggacagg	14	13	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4889810	A	A	4889810	1	1	203	0	1	0	0	0	0	0	0	0	474	1247	43	4		4	AKR1E2	10	4889810	3'UTR	SNP	G	TCGA-73-4658-01A-01D-1753-08	3290829	4889810	130644937	326	159838											
PFKFB3	5209	broad.mit.edu	37	chr10	6273181	6273181	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagattttcttttttttttTccttttccaacctgtttctt	2	8	2	1	rs35890201		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6273181	C	C	6273181	1	2	203	0	1	0	0	0	0	0	0	0	11857	1798	62	5		5	PFKFB3	10	6273181	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	1383371	6273181	129261566	327	159839											
BEND7	222389	broad.mit.edu	37	chr10	13489229	13489229	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agttttgtgggctgtattttCcaggaggtgatgaaaatgta	13	3	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13489229	T	T	13489229	1	4	203	0	1	0	0	0	0	0	0	0	1408	870	30	4		4	BEND7	10	13489229	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	7216048	13489229	122045518	328	159840											
ITGA8	8516	broad.mit.edu	37	chr10	15688794	15688794	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaggcatggtctccttTatgcagtggtgacgacacat	10	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15688794	A	A	15688794	1	1	203	0	1	0	0	0	0	0	0	0	7952	1769	61	5		5	ITGA8	10	15688794	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	2199565	15688794	119845953	329	159841											
MRC1	4360	broad.mit.edu	37	chr10	17949583	17949583	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gataaataacagtccggtctCctttgtcaactggaacacag	8	10	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17949583	G	G	17949583	3	3	203	1	0	0	0	0	1	0	0	0	9850	855	30	4	4057	4	MRC1	10	17949583	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2260789	17949583	117585164	330	159842											
KIAA1217	56243	broad.mit.edu	37	chr10	24722075	24722075	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgcccagtgtcgccatttaCatcaaagatgaaagcagaaa	8	10	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24722075	T	T	24722075	2	4	203	1	0	0	0	0	0	0	0	1	8286	489	17	4		4	KIAA1217	10	24722075	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	6772492	24722075	110812672	331	159843											
MKX	283078	broad.mit.edu	37	chr10	27964405	27964405	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtttgcattgaaaatgCcatcgctgaaaagcaggaac	10	8	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27964405	T	T	27964405	1	4	203	0	1	0	0	0	0	0	0	0	9703	754	26	4		4	MKX	10	27964405	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3242330	27964405	107570342	332	159844											
ERCC6	2074	broad.mit.edu	37	chr10	50680512	50680512	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattctccatgctcgctccCgggcctgcaacagagagaga	10	14	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50680512	A	A	50680512	3	1	203	1	0	0	0	0	1	0	0	0	5259	652	23	1	1671	1	ERCC6	10	50680512	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	22716107	50680512	84854235	333	159845											
HKDC1	80201	broad.mit.edu	37	chr10	71000593	71000593	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagctctgagtgaattcggCgggaagggcactgcactatt	14	9	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71000593	A	A	71000593	1	1	203	0	1	0	0	0	0	0	0	0	7260	783	27	3		3	HKDC1	10	71000593	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	20320081	71000593	64534154	334	159846											
PSAP	5660	broad.mit.edu	37	chr10	73577081	73577081	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacacagaaatgggggagGtgggggagccctatttttat	16	5	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73577081	A	A	73577081	1	1	203	0	1	0	0	0	0	0	0	0	12749	1276	44	4		4	PSAP	10	73577081	3'UTR	SNP	G	TCGA-73-4658-01A-01D-1753-08	2576488	73577081	61957666	335	159847											
CDHR1	92211	broad.mit.edu	37	chr10	85956211	85956211	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcatctgccacttttaGgaaaagttgggtctcagatt	10	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85956211	T	T	85956211	1	4	203	0	1	0	0	0	0	0	0	0	3148	1015	35	2		2	CDHR1	10	85956211	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	12379130	85956211	49578536	336	159848											
FAM190B	54462	broad.mit.edu	37	chr10	86131442	86131442	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccccagacagtagtaaaTctattaattgtgaaaaaatg	6	6	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86131442	C	C	86131442	3	2	203	1	0	0	0	0	1	0	0	0	5569	1435	50	5	636	5	FAM190B	10	86131442	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	175231	86131442	49403305	337	159849											
AGAP11	119385	broad.mit.edu	37	chr10	88768270	88768270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatttgcaagcagtccatGggctggtccaacctgtttac	9	13	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88768270	T	T	88768270	3	4	203	1	0	0	0	0	1	0	0	0	367	1348	47	2	275	2	AGAP11	10	88768270	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2636828	88768270	46766477	338	159850											
PTEN	5728	broad.mit.edu	37	chr10	89692883	89692883	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaatcatgttgcagcaattCactgtaaagctggaaaggga	10	7	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89692883	T	T	89692883	3	4	203	1	0	0	0	0	1	0	0	0	12844	826	29	4	385	4	PTEN	10	89692883	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	924613	89692883	45841864	339	159851											
EXOC6	54536	broad.mit.edu	37	chr10	94818035	94818035	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcagttcaggaagaatgatCgagacaaacagaagttgata	10	6	2	5			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94818035	T	T	94818035	4	4	203	1	0	0	0	0	0	1	0	0	5350	876	31	4	2514	4	EXOC6	10	94818035	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	5125152	94818035	40716712	340	159852											
TLL2	7093	broad.mit.edu	37	chr10	98146861	98146861	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaggaaggtgaccccgGttacattgtcaggaagcctc	15	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98146861	T	T	98146861	1	4	203	0	1	0	0	0	0	0	0	0	16069	1276	44	3		3	TLL2	10	98146861	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3328826	98146861	37387886	341	159853											
RRP12	23223	broad.mit.edu	37	chr10	99140513	99140513	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcccatagtccaagagCcagcaccacttcctgccctg	9	16	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99140513	A	A	99140513	1	1	203	0	1	0	0	0	0	0	0	0	13797	754	26	3		3	RRP12	10	99140513	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	993652	99140513	36394234	342	159854											
LZTS2	84445	broad.mit.edu	37	chr10	102763815	102763815	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgcctccacctccttcGgatgaggccctgctgcactg	9	20	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102763815	T	T	102763815	2	4	203	1	0	0	0	0	0	0	0	1	9227	1103	39	1		1	LZTS2	10	102763815	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	3623302	102763815	32770932	343	159855											
SORCS3	22986	broad.mit.edu	37	chr10	106976816	106976816	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagtgcggggatcttccaGgtgacagcctatgcagagaa	14	8	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106976816	T	T	106976816	3	4	203	1	0	0	0	0	1	0	0	0	15046	991	35	2	2744	2	SORCS3	10	106976816	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4213001	106976816	28557931	344	159856											
FAM45A	404636	broad.mit.edu	37	chr10	120867611	120867611	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccatccctttgtctttggtCagtacagaagaacatggttt	8	9	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120867611	G	G	120867611	3	3	203	1	0	0	0	0	1	0	0	0	5615	827	29	4	193	4	FAM45A	10	120867611	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	13890795	120867611	14667136	345	159857											
FAM175B	23172	broad.mit.edu	37	chr10	126505135	126505135	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaagatgtatttcctctttCtaattacagaaatccataac	3	9	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126505135	T	T	126505135	1	4	203	0	1	0	0	0	0	0	0	0	5543	928	32	4		4	FAM175B	10	126505135	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	5637524	126505135	9029612	346	159858											
C11orf35	256329	broad.mit.edu	37	chr11	555798	555798	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaggggtcgaggtgggcGcggcggcttgcgggtgtcgg	24	9	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	555798	A	A	555798	3	1	203	1	0	0	0	0	1	0	0	0	1650	1087	38	4	406	4	C11orf35	11	555798	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08		555798	134450718	347	159859											
PNPLA2	57104	broad.mit.edu	37	chr11	821651	821651	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggctggtgccaagttcattGaggtatctaaagaggcccgg	14	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	821651	C	C	821651	3	2	203	1	0	0	0	0	1	0	0	0	12260	1291	45	4	217	4	PNPLA2	11	821651	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	265853	821651	134184865	348	159860											
TSSC4	10078	broad.mit.edu	37	chr11	2424159	2424159	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagccgtgacatctttgactGcctggagggggcggccagac	15	12	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2424159	C	C	2424159	3	2	203	1	0	0	0	0	1	0	0	0	16792	1319	46	4	298	4	TSSC4	11	2424159	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1602508	2424159	132582357	349	159861											
OR2D2	120776	broad.mit.edu	37	chr11	6912807	6912807	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgagattccaagccttcAtgggaaattccttgtggcta	11	8	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6912807	T	T	6912807	1	4	203	0	1	0	0	0	0	0	0	0	11088	231	8	5		5	OR2D2	11	6912807	3'UTR	SNP	A	TCGA-73-4658-01A-01D-1753-08	4488648	6912807	128093709	350	159862											
IPO7	10527	broad.mit.edu	37	chr11	9442085	9442085	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatatggtgatttaaattaAtttattaaggttttgcttta	6	1	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9442085	C	C	9442085	1	2	203	0	1	0	0	0	0	0	0	0	7867	116	4	5		5	IPO7	11	9442085	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	2529278	9442085	125564431	351	159863											
NELL1	4745	broad.mit.edu	37	chr11	21556118	21556119	+	Intron	DNP	TG	AA	AA													cctttgcaggaggtgtggctTgctttggtactctgttcagc							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	21556119	AA	AA	21556118	1	1	203	0	1	0	0	0	0	0	0	0	10428	1827	63	5		5	NELL1	11	21556118	Intron	DNP	TG	TCGA-73-4658-01A-01D-1753-08	12114033	21556118	113450398	352	159864											
CREB3L1	90993	broad.mit.edu	37	chr11	46332651	46332651	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acagcgacggctcccagagtCcccgctctctgcccccctcc	8	22	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46332651	G	G	46332651	3	3	203	1	0	0	0	0	1	0	0	0	3888	855	30	4	682	4	CREB3L1	11	46332651	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	24776533	46332651	88673865	353	159865											
CREB3L1	90993	broad.mit.edu	37	chr11	46332680	46332680	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcccccctccagccctgtCaggcccatggcgcgctcctc	9	22	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46332680	G	G	46332680	2	3	203	1	0	0	0	0	0	0	0	1	3888	813	29	4		4	CREB3L1	11	46332680	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	29	46332680	88673836	354	159866											
TRIM48	79097	broad.mit.edu	37	chr11	55037999	55037999	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtattggatgtgaccgtCaaaatccgccccatatcact	7	11	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55037999	A	A	55037999	1	1	203	0	1	0	0	0	0	0	0	0	16648	841	29	3		3	TRIM48	11	55037999	3'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	8705319	55037999	79968517	355	159867											
SCGB2A2	4250	broad.mit.edu	37	chr11	62040517	62040517	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagggtatggtgagaaacCaactacggattgctgcaaac	12	8	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62040517	A	A	62040517	1	1	203	0	1	0	0	0	0	0	0	0	14012	609	21	2		2	SCGB2A2	11	62040517	3'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	7002518	62040517	72965999	356	159868											
MTA2	9219	broad.mit.edu	37	chr11	62363320	62363320	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagcacagaggcggcactgCatgttaggtgggccccaggc	16	11	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62363320	G	G	62363320	3	3	203	1	0	0	0	0	1	0	0	0	10003	710	25	4	872	4	MTA2	11	62363320	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	322803	62363320	72643196	357	159869											
SNX32	254122	broad.mit.edu	37	chr11	65617697	65617697	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attgggcgagggggacagctCtgtcactcgggaagagtttg	17	7	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65617697	G	G	65617697	3	3	203	1	0	0	0	0	1	0	0	0	15016	913	32	4	343	4	SNX32	11	65617697	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3254377	65617697	69388819	358	159870											
PDE2A	5138	broad.mit.edu	37	chr11	72295646	72295646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttgcgcgtgcggaagcCggtgctgtcgtccacgccgc	16	13	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72295646	A	A	72295646	3	1	203	1	0	0	0	0	1	0	0	0	11730	652	23	1	1395	1	PDE2A	11	72295646	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	6677949	72295646	62710870	359	159871											
ARHGEF17	9828	broad.mit.edu	37	chr11	73057894	73057894	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggggtctggggggaaaaaGacccctgttcaccctctgct	13	11	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73057894	T	T	73057894	1	4	203	0	1	0	0	0	0	0	0	0	902	957	33	3		3	ARHGEF17	11	73057894	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	762248	73057894	61948622	360	159872											
SLCO2B1	11309	broad.mit.edu	37	chr11	74915502	74915502	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgatctgcttcgccttagtTttggctgtcctgaggcagca	12	10	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74915502	A	A	74915502	2	1	203	1	0	0	0	0	0	0	0	1	14841	1828	64	5		5	SLCO2B1	11	74915502	Silent	SNP	T	TCGA-73-4658-01A-01D-1753-08	1857608	74915502	60091014	361	159873											
RAB38	23682	broad.mit.edu	37	chr11	87847182	87847182	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggcacagccagagcagcTggcaaccttggttgatgtga	13	9	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87847182	C	C	87847182	3	2	203	1	0	0	0	0	1	0	0	0	13036	1580	55	5	29	5	RAB38	11	87847182	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	12931680	87847182	47159334	362	159874											
FOLH1B	219595	broad.mit.edu	37	chr11	89405072	89405072	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacagatatgtcattctgGgaggtcaccgggactcatgg	13	8	4	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89405072	T	T	89405072	4	4	203	1	0	0	0	0	0	1	0	0	6038	1233	43	2	209	2	FOLH1B	11	89405072	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1557890	89405072	45601444	363	159875											
FOLH1B	219595	broad.mit.edu	37	chr11	89405092	89405092	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtcaccgggactcatgGgtgtttggtggtattgaccc	16	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89405092	C	C	89405092	3	2	203	1	0	0	0	0	1	0	0	0	6038	1241	43	4	229	4	FOLH1B	11	89405092	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	20	89405092	45601424	364	159876											
SLC36A4	120103	broad.mit.edu	37	chr11	92899090	92899090	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactaaattcttaccactccTatgccttcaaaagcaaatac	3	12	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92899090	A	A	92899090	2	1	203	1	0	0	0	0	0	0	0	1	14710	1512	53	5		5	SLC36A4	11	92899090	Silent	SNP	T	TCGA-73-4658-01A-01D-1753-08	3493998	92899090	42107426	365	159877											
PIWIL4	143689	broad.mit.edu	37	chr11	94316682	94316682	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actatcaccctgaagagggaGctgccatcaagttctcccgt	9	13	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94316682	A	A	94316682	2	1	203	1	0	0	0	0	0	0	0	1	12055	962	34	4		4	PIWIL4	11	94316682	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	1417592	94316682	40689834	366	159878											
MMP20	9313	broad.mit.edu	37	chr11	102480574	102480574	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacgttgaacctcaaggtttCatgatggagcccagaagaag	12	8	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102480574	T	T	102480574	1	4	203	0	1	0	0	0	0	0	0	0	9752	841	29	4		4	MMP20	11	102480574	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	8163892	102480574	32525942	367	159879											
MMP10	4319	broad.mit.edu	37	chr11	102650210	102650210	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttataaggtttcaatattaTgtgaaaactaatctgaacca	5	6	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102650210	A	A	102650210	1	1	203	0	1	0	0	0	0	0	0	0	9742	1479	51	5		5	MMP10	11	102650210	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	169636	102650210	32356306	368	159880											
GRIA4	2893	broad.mit.edu	37	chr11	105483079	105483079	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcttcataacaccagcccCaatgcgtcggaagctccttt	6	14	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105483079	T	T	105483079	2	4	203	1	0	0	0	0	0	0	0	1	6836	581	21	4		4	GRIA4	11	105483079	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	2832869	105483079	29523437	369	159881											
TTC12	54970	broad.mit.edu	37	chr11	113230118	113230118	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgtggacctgttcagaGaggttatctacacactcctg	11	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113230118	A	A	113230118	3	1	203	1	0	0	0	0	1	0	0	0	16805	943	33	4	1542	4	TTC12	11	113230118	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	7747039	113230118	21776398	370	159882											
BUD13	84811	broad.mit.edu	37	chr11	116633907	116633907	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagatggatctggggtaccaTgacggaccctcctaggagat	14	9	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116633907	A	A	116633907	3	1	203	1	0	0	0	0	1	0	0	0	1583	1464	51	5	1489	5	BUD13	11	116633907	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	3403789	116633907	18372609	371	159883											
AMICA1	120425	broad.mit.edu	37	chr11	118076813	118076813	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agaccctcagcagcaaaaatCgctgtcaccaccaaacactg	6	15	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118076813	T	T	118076813	1	4	203	0	1	0	0	0	0	0	0	0	574	899	31	4		4	AMICA1	11	118076813	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1442906	118076813	16929703	372	159884											
UBE4A	9354	broad.mit.edu	37	chr11	118247488	118247488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaattgagtctttggccaGgcacagtagctcacatcttt	9	9	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118247488	T	T	118247488	1	4	203	0	1	0	0	0	0	0	0	0	17008	1015	35	2		2	UBE4A	11	118247488	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	170675	118247488	16759028	373	159885											
UBE4A	9354	broad.mit.edu	37	chr11	118263480	118263480	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagacctccaacaacaggaaGaggaaacctatgcagatgcc	9	12	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118263480	T	T	118263480	4	4	203	1	0	0	0	0	0	1	0	0	17008	943	33	3	3035	3	UBE4A	11	118263480	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	15992	118263480	16743036	374	159886											
MLL	4297	broad.mit.edu	37	chr11	118359361	118359361	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagtctgttgtgagcccttCcacaagttttgtttagagga	10	8	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118359361	T	T	118359361	2	4	203	1	0	0	0	0	0	0	0	1	9713	854	30	4		4	MLL	11	118359361	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	95881	118359361	16647155	375	159887											
PHLDB1	23187	broad.mit.edu	37	chr11	118502601	118502601	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccaaaaggctctaggcttCctcagttgatagcttccctc	7	13	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118502601	T	T	118502601	1	4	203	0	1	0	0	0	0	0	0	0	11946	870	30	4		4	PHLDB1	11	118502601	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	143240	118502601	16503915	376	159888											
CLEC6A	93978	broad.mit.edu	37	chr12	8618354	8618354	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattactgggtaacagatctCtagaactttttcatcttgca	6	9	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8618354	G	G	8618354	1	3	203	0	1	0	0	0	0	0	0	0	3552	928	32	4		4	CLEC6A	12	8618354	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08		8618354	125233541	377	159889											
TAS2R30	259293	broad.mit.edu	37	chr12	11286483	11286483	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actcttaactctcctctttaTgcgaagaaaaataaggttgg	7	8	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11286483	A	A	11286483	3	1	203	1	0	0	0	0	1	0	0	0	15692	1464	51	5	602	5	TAS2R30	12	11286483	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	2668129	11286483	122565412	378	159890											
GRIN2B	2904	broad.mit.edu	37	chr12	13715803	13715803	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggggtttttgttgttagGcacacaggggttggactggt	16	6	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13715803	A	A	13715803	3	1	203	1	0	0	0	0	1	0	0	0	6846	1203	42	4	89	4	GRIN2B	12	13715803	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2429320	13715803	120136092	379	159891											
GRIN2B	2904	broad.mit.edu	37	chr12	13906490	13906490	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgccaccagactgggcacGatccacgtgtagccatagcc	10	16	0	1	rs142203984		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13906490	A	A	13906490	2	1	203	1	0	0	0	0	0	0	0	1	6846	1048	37	4		4	GRIN2B	12	13906490	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	190687	13906490	119945405	380	159892											
RECQL	5965	broad.mit.edu	37	chr12	21636334	21636334	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgaaatcatgtccccactGactacagcagtgaacttcat	6	12	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21636334	A	A	21636334	4	1	203	1	0	0	0	0	0	1	0	0	13309	1299	45	4	1313	4	RECQL	12	21636334	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	7729844	21636334	112215561	381	159893											
STK38L	23012	broad.mit.edu	37	chr12	27475204	27475204	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtaactaaccctattaaaaGtctttgaagatgatggcatt	7	6	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27475204	C	C	27475204	1	2	203	0	1	0	0	0	0	0	0	0	15422	1044	36	4		4	STK38L	12	27475204	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	5838870	27475204	106376691	382	159894											
NELL2	4753	broad.mit.edu	37	chr12	45170870	45170870	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctgtagctccatgattttCtgcacaagtccatggaagtc	8	11	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45170870	G	G	45170870	3	3	203	1	0	0	0	0	1	0	0	0	10429	912	32	4	1789	4	NELL2	12	45170870	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	17695666	45170870	88681025	383	159895											
ARID2	196528	broad.mit.edu	37	chr12	46233223	46233223	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaaatgttatctgaaaTtaggccacaagctatagagc	7	8	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46233223	A	A	46233223	3	1	203	1	0	0	0	0	1	0	0	0	917	1493	52	5	1484	5	ARID2	12	46233223	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	1062353	46233223	87618672	384	159896											
FAM186B	84070	broad.mit.edu	37	chr12	49999268	49999268	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catccttctccattttggatCactctgtcagtcacaaaaca	4	13	5	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49999268	T	T	49999268	1	4	203	0	1	0	0	0	0	0	0	0	5558	841	29	4		4	FAM186B	12	49999268	5'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	3766045	49999268	83852627	385	159897											
DAZAP2	9802	broad.mit.edu	37	chr12	51634866	51634866	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggtatgatgcaggtgccaGatttggagctggggctactg	17	6	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51634866	C	C	51634866	1	2	203	0	1	0	0	0	0	0	0	0	4278	942	33	4		4	DAZAP2	12	51634866	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1635598	51634866	82217029	386	159898											
DAZAP2	9802	broad.mit.edu	37	chr12	51636127	51636127	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctttcagcctccacctcctgGatgccctcccaatgctgctc	6	19	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51636127	C	C	51636127	3	2	203	1	0	0	0	0	1	0	0	0	4278	1183	41	4	406	4	DAZAP2	12	51636127	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1261	51636127	82215768	387	159899											
KRT6A	3853	broad.mit.edu	37	chr12	52886337	52886337	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagagctgggctgagtcctCttctccctccctcctaggtc	10	16	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52886337	T	T	52886337	1	4	203	0	1	0	0	0	0	0	0	0	8551	928	32	4		4	KRT6A	12	52886337	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1250210	52886337	80965558	388	159900											
NCKAP1L	3071	broad.mit.edu	37	chr12	54911422	54911422	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agacacctgaggactatgctGactcgttagtacttgacatg	10	9	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54911422	A	A	54911422	3	1	203	1	0	0	0	0	1	0	0	0	10317	1290	45	4	1247	4	NCKAP1L	12	54911422	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2025085	54911422	78940473	389	159901											
CS	1431	broad.mit.edu	37	chr12	56669989	56669989	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcataaatcaactgacagaaGaggagcaagatggagaaaaa	10	5	2	5			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56669989	T	T	56669989	1	4	203	0	1	0	0	0	0	0	0	0	3956	957	33	3		3	CS	12	56669989	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1758567	56669989	77181906	390	159902											
LRP1	4035	broad.mit.edu	37	chr12	57600282	57600282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaccaggtcctgtacatcGctgatgacaatgagatccgc	10	11	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57600282	T	T	57600282	3	4	203	1	0	0	0	0	1	0	0	0	9038	1087	38	3	11919	3	LRP1	12	57600282	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	930293	57600282	76251613	391	159903											
ARHGAP9	64333	broad.mit.edu	37	chr12	57868455	57868455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaccactgccaagttcccGctcacccgataaatgccatc	7	16	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57868455	T	T	57868455	3	4	203	1	0	0	0	0	1	0	0	0	891	1078	38	3	532	3	ARHGAP9	12	57868455	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	268173	57868455	75983440	392	159904											
IL26	55801	broad.mit.edu	37	chr12	68619203	68619203	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataagtggaaatgtaaaaaaGaagaagactttctgacttac	8	4	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68619203	C	C	68619203	1	2	203	0	1	0	0	0	0	0	0	0	7749	957	33	4		4	IL26	12	68619203	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	10750748	68619203	65232692	393	159905											
IL22	50616	broad.mit.edu	37	chr12	68647143	68647143	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcgcagctgctcctcccTgtaccaagagggccaagaga	13	13	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68647143	A	A	68647143	3	1	203	1	0	0	0	0	1	0	0	0	7742	1580	55	5	473	5	IL22	12	68647143	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	27940	68647143	65204752	394	159906											
SNRPF	6636	broad.mit.edu	37	chr12	96254927	96254927	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaataattaattagatccTtttttgttctttgtgcagag	6	4	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96254927	C	C	96254927	1	2	203	0	1	0	0	0	0	0	0	0	14982	1624	56	5		5	SNRPF	12	96254927	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	27607784	96254927	37596968	395	159907											
ANO4	121601	broad.mit.edu	37	chr12	101472952	101472952	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattcaaaaatgtctttgtCtttctctgcttgttccagca	5	9	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101472952	G	G	101472952	1	3	203	0	1	0	0	0	0	0	0	0	699	928	32	4		4	ANO4	12	101472952	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	5218025	101472952	32378943	396	159908											
NT5DC3	51559	broad.mit.edu	37	chr12	104208701	104208701	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagggagaagcctgaaatgtCcctgtgatcttacccggtgt	13	9	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104208701	A	A	104208701	1	1	203	0	1	0	0	0	0	0	0	0	10787	870	30	3		3	NT5DC3	12	104208701	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	2735749	104208701	29643194	397	159909											
SSH1	54434	broad.mit.edu	37	chr12	109186349	109186349	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccaacagagcctccctctCcggatcctccaggtggacca	8	18	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109186349	G	G	109186349	3	3	203	1	0	0	0	0	1	0	0	0	15302	864	30	4	1737	4	SSH1	12	109186349	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4977648	109186349	24665546	398	159910											
C12orf34	84915	broad.mit.edu	37	chr12	110206380	110206380	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgccaggccccgggcgccGcaccccctgcctgccagggc	14	20	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110206380	C	C	110206380	3	2	203	1	0	0	0	0	1	0	0	0	1694	1087	38	4	652	4	C12orf34	12	110206380	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1020031	110206380	23645515	399	159911											
CUX2	23316	broad.mit.edu	37	chr12	111758260	111758260	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctcctcctctggctactCtggccagcccaacggccgcg	9	20	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111758260	G	G	111758260	3	3	203	1	0	0	0	0	1	0	0	0	4098	913	32	4	2513	4	CUX2	12	111758260	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1551880	111758260	22093635	400	159912											
CUX2	23316	broad.mit.edu	37	chr12	111776136	111776136	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtctgacacagggctcCgtgtctgacctgctgtcccg	13	14	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111776136	A	A	111776136	2	1	203	1	0	0	0	0	0	0	0	1	4098	639	23	1		1	CUX2	12	111776136	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	17876	111776136	22075759	401	159913											
ACAD10	80724	broad.mit.edu	37	chr12	112150556	112150556	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaatggaatgggctggagaCaaagaagctttacagtgagg	14	5	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112150556	T	T	112150556	1	4	203	0	1	0	0	0	0	0	0	0	108	493	17	4		4	ACAD10	12	112150556	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	374420	112150556	21701339	402	159914											
NAA25	80018	broad.mit.edu	37	chr12	112528570	112528570	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatagtcagtgcctgcagTgagttgtcatctgtgggttc	14	7	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112528570	A	A	112528570	2	1	203	1	0	0	0	0	0	0	0	1	10215	1683	59	5		5	NAA25	12	112528570	Silent	SNP	T	TCGA-73-4658-01A-01D-1753-08	378014	112528570	21323325	403	159915											
RBM19	9904	broad.mit.edu	37	chr12	114377779	114377779	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctaccttggaataggccaGatgcctgaaggccttgcggg	13	12	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114377779	C	C	114377779	3	2	203	1	0	0	0	0	1	0	0	0	13229	933	33	4	998	4	RBM19	12	114377779	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1849209	114377779	19474116	404	159916											
CLIP1	6249	broad.mit.edu	37	chr12	122862308	122862308	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccatcgttcttgcctatGggttcatctaaaacaattcc	6	11	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122862308	A	A	122862308	2	1	203	1	0	0	0	0	0	0	0	1	3564	1335	47	4		4	CLIP1	12	122862308	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	8484529	122862308	10989587	405	159917											
PITPNM2	57605	broad.mit.edu	37	chr12	123481747	123481747	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcacctccaggtagaaGgggctggccggtgggtctgg	19	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123481747	C	C	123481747	1	2	203	0	1	0	0	0	0	0	0	0	12046	1015	35	4		4	PITPNM2	12	123481747	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	619439	123481747	10370148	406	159918											
WASF3	10810	broad.mit.edu	37	chr13	27151251	27151251	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcttgctgatttgcagaaaGatgagattgcatttagaaaa	10	4	1	5	rs141258963	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27151251	C	C	27151251	1	2	203	0	1	0	0	0	0	0	0	0	17381	957	33	4		4	WASF3	13	27151251	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08		27151251	88018627	407	159919											
POSTN	10631	broad.mit.edu	37	chr13	38145512	38145512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaggaacgcacctccatGgatcacttcagttattgttt	7	10	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38145512	T	T	38145512	3	4	203	1	0	0	0	0	1	0	0	0	12354	1348	47	2	361	2	POSTN	13	38145512	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	10994261	38145512	77024366	408	159920											
ATP7B	540	broad.mit.edu	37	chr13	52539113	52539113	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcataagtgatgccatttgtCctcgtgagtttggactctat	10	8	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52539113	A	A	52539113	3	1	203	1	0	0	0	0	1	0	0	0	1195	854	30	3	2701	3	ATP7B	13	52539113	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	14393601	52539113	62630765	409	159921											
PCDH9	5101	broad.mit.edu	37	chr13	67802360	67802360	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcaccaaaggggcatcCccagctttagaaaccagtct	7	13	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67802360	A	A	67802360	2	1	203	1	0	0	0	0	0	0	0	1	11612	610	22	2		2	PCDH9	13	67802360	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	15263247	67802360	47367518	410	159922											
DACH1	1602	broad.mit.edu	37	chr13	72014681	72014681	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaacattaatacacaaaattCaggaagttcccttaaaagga	6	7	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72014681	G	G	72014681	1	3	203	0	1	0	0	0	0	0	0	0	4253	841	29	4		4	DACH1	13	72014681	3'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	4212321	72014681	43155197	411	159923											
COL4A2	1284	broad.mit.edu	37	chr13	111118389	111118389	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagggccgttggaggtgacaGacaggaggccatccagccag	16	10	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111118389	A	A	111118389	3	1	203	1	0	0	0	0	1	0	0	0	3722	942	33	4	2116	4	COL4A2	13	111118389	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	39103708	111118389	4051489	412	159924											
TUBGCP3	10426	broad.mit.edu	37	chr13	113176788	113176788	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagcatcaatcttcccctGaaatgcattttccaagtctg	6	12	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113176788	A	A	113176788	4	1	203	1	0	0	0	0	0	1	0	0	16893	1299	45	4	1168	4	TUBGCP3	13	113176788	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2058399	113176788	1993090	413	159925											
TUBGCP3	10426	broad.mit.edu	37	chr13	113181801	113181801	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atctgatgctacaaaaaactGaaagcaaaggggcatggaaa	10	6	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113181801	A	A	113181801	1	1	203	0	1	0	0	0	0	0	0	0	16893	1305	45	4		4	TUBGCP3	13	113181801	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	5013	113181801	1988077	414	159926											
OR4Q3	441669	broad.mit.edu	37	chr14	20215671	20215671	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgcagctatttctcttcTtactatttttgtttttttac	4	8	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20215671	A	A	20215671	3	1	203	1	0	0	0	0	1	0	0	0	11175	1606	56	5	87	5	OR4Q3	14	20215671	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08		20215671	87133869	415	159927											
FLJ10357	55701	broad.mit.edu	37	chr14	21550590	21550590	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttctgcgggagcttcagGgctgcgccacccacccccta	10	17	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21550590	T	T	21550590	3	4	203	1	0	0	0	0	1	0	0	0	5983	1232	43	2	3497	2	FLJ10357	14	21550590	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1334919	21550590	85798950	416	159928											
SLC7A7	9056	broad.mit.edu	37	chr14	23243287	23243287	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacagccaccaggaagatGgtgcagaggcagaagacaat	14	8	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23243287	A	A	23243287	2	1	203	1	0	0	0	0	0	0	0	1	14817	1335	47	4		4	SLC7A7	14	23243287	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	1692697	23243287	84106253	417	159929											
NYNRIN	57523	broad.mit.edu	37	chr14	24878023	24878023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctccagtatcagccctGggtgtgtgcccaccctggaa	10	15	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24878023	T	T	24878023	2	4	203	1	0	0	0	0	0	0	0	1	10891	1335	47	2		2	NYNRIN	14	24878023	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	1634736	24878023	82471517	418	159930											
LRFN5	145581	broad.mit.edu	37	chr14	42360646	42360646	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtctcagtttttgggaGgcaccatgattattattatt	9	6	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42360646	T	T	42360646	3	4	203	1	0	0	0	0	1	0	0	0	9028	1000	35	2	1585	2	LRFN5	14	42360646	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	17482623	42360646	64988894	419	159931											
FANCM	57697	broad.mit.edu	37	chr14	45644916	45644916	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcattgacaaaagaggtaCtagctaatgtagagagattt	9	5	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45644916	T	T	45644916	2	4	203	1	0	0	0	0	0	0	0	1	5728	564	20	4		4	FANCM	14	45644916	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	3284270	45644916	61704624	420	159932											
SDCCAG1	9147	broad.mit.edu	37	chr14	50201263	50201263	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggaaaattaaaattgtatCccagagacctaatcttaatt	7	6	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50201263	T	T	50201263	1	4	203	0	1	0	0	0	0	0	0	0	14070	870	30	4		4	SDCCAG1	14	50201263	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	4556347	50201263	57148277	421	159933											
KTN1	3895	broad.mit.edu	37	chr14	56085908	56085908	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttcaaattaagaaaatgctGaagtgaagtttaaagatttt	7	2	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56085908	A	A	56085908	3	1	203	1	0	0	0	0	1	0	0	0	8657	1291	45	4	855	4	KTN1	14	56085908	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	5884645	56085908	51263632	422	159934											
PELI2	57161	broad.mit.edu	37	chr14	56746482	56746482	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacacacatgataaggataCggatatgtttcaggtaatat	9	5	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56746482	T	T	56746482	3	4	203	1	0	0	0	0	1	0	0	0	11816	536	19	4	306	4	PELI2	14	56746482	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	660574	56746482	50603058	423	159935											
EXD2	55218	broad.mit.edu	37	chr14	69695691	69695691	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatggcaccattttgaaagtTggagtgggatgctcagaaga	14	5	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69695691	A	A	69695691	2	1	203	1	0	0	0	0	0	0	0	1	5340	1799	63	5		5	EXD2	14	69695691	Silent	SNP	T	TCGA-73-4658-01A-01D-1753-08	12949209	69695691	37653849	424	159936											
EIF2B2	8892	broad.mit.edu	37	chr14	75469779	75469779	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcggggtggtgggccgcGcagctccgaggaaatggctc	19	10	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75469779	A	A	75469779	3	1	203	1	0	0	0	0	1	0	0	0	5041	1087	38	4	88	4	EIF2B2	14	75469779	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	5774088	75469779	31879761	425	159937											
EIF2B2	8892	broad.mit.edu	37	chr14	75474434	75474434	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctttttagttccccaatGaagaagactcatttcataag	5	9	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75474434	A	A	75474434	3	1	203	1	0	0	0	0	1	0	0	0	5041	1291	45	4	867	4	EIF2B2	14	75474434	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4655	75474434	31875106	426	159938											
VIPAR	63894	broad.mit.edu	37	chr14	77909509	77909509	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagaacctacaggaaaaaaGaacaaagactgtgcaaactt	7	8	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77909509	C	C	77909509	1	2	203	0	1	0	0	0	0	0	0	0	17295	957	33	4		4	VIPAR	14	77909509	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	2435075	77909509	29440031	427	159939											
KIAA1409	57578	broad.mit.edu	37	chr14	94120276	94120276	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacactaaatccgatcgttGactttccagatgggactttt	7	9	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94120276	A	A	94120276	1	1	203	0	1	0	0	0	0	0	0	0	8300	1305	45	4		4	KIAA1409	14	94120276	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	16210767	94120276	13229264	428	159940											
RCOR1	23186	broad.mit.edu	37	chr14	103173935	103173935	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagatagggatatcatactCaaacataaatattcccattt	5	7	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103173935	T	T	103173935	1	4	203	0	1	0	0	0	0	0	0	0	13290	841	29	4		4	RCOR1	14	103173935	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	9053659	103173935	4175605	429	159941											
GPR132	29933	broad.mit.edu	37	chr14	105517991	105517991	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaagatgcaggcggagatGaggatggcggtcctccggcg	18	8	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105517991	A	A	105517991	2	1	203	1	0	0	0	0	0	0	0	1	6707	1277	45	4		4	GPR132	14	105517991	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	2344056	105517991	1831549	430	159942											
C15orf2	23742	broad.mit.edu	37	chr15	24923219	24923219	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctgggaacacacaaccCagcggcaacactgcctcagt	10	14	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24923219	A	A	24923219	2	1	203	1	0	0	0	0	0	0	0	1	1797	581	21	2		2	C15orf2	15	24923219	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08		24923219	77608173	431	159943											
OCA2	4948	broad.mit.edu	37	chr15	28211876	28211876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgttataaagctttctgttCcagtaaaggagtctgaggag	11	5	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28211876	A	A	28211876	3	1	203	1	0	0	0	0	1	0	0	0	10910	856	30	3	960	3	OCA2	15	28211876	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3288657	28211876	74319516	432	159944											
TRPM1	4308	broad.mit.edu	37	chr15	31324995	31324995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatccacacagtagatcaccCggccatagcccatgtagggc	9	14	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324995	A	A	31324995	3	1	203	1	0	0	0	0	1	0	0	0	16710	652	23	1	2056	1	TRPM1	15	31324995	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3113119	31324995	71206397	433	159945											
LPCAT4	254531	broad.mit.edu	37	chr15	34652261	34652261	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaataggcctcctggagCggggtgagcatagccactaa	12	11	0	1	rs72625170	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34652261	A	A	34652261	1	1	203	0	1	0	0	0	0	0	0	0	9000	783	27	3		3	LPCAT4	15	34652261	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3327266	34652261	67879131	434	159946											
MEIS2	4212	broad.mit.edu	37	chr15	37242563	37242563	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtaagtcctgtgtcttgCgctaactgtttcttctgctc	8	10	3	0	rs140793410		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37242563	G	G	37242563	2	3	203	1	0	0	0	0	0	0	0	1	9561	755	27	4		4	MEIS2	15	37242563	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	2590302	37242563	65288829	435	159947											
CKMT1A	548596	broad.mit.edu	37	chr15	43990807	43990807	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gactagtctctgcctctattGaccctgctcccaatccctat	5	16	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43990807	A	A	43990807	1	1	203	0	1	0	0	0	0	0	0	0	3480	1305	45	4		4	CKMT1A	15	43990807	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	6748244	43990807	58540585	436	159948											
C15orf63	25764	broad.mit.edu	37	chr15	44093484	44093484	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttataccgttcttcaaatTtatcaccaattcctgcagat	3	11	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44093484	G	G	44093484	1	3	203	0	1	0	0	0	0	0	0	0	1823	1856	64	5		5	C15orf63	15	44093484	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	102677	44093484	58437908	437	159949											
TRIM69	140691	broad.mit.edu	37	chr15	45028843	45028843	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcccagtctgcagccatcCtgggcctgctgagctctgat	10	15	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45028843	A	A	45028843	1	1	203	1	0	0	0	0	0	0	0	0	16667	696	24	2		2	TRIM69	15	45028843	Translation_Start_Site	SNP	C	TCGA-73-4658-01A-01D-1753-08	935359	45028843	57502549	438	159950											
SEMA6D	80031	broad.mit.edu	37	chr15	48062801	48062801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggcattcattgcaggtGtggcagtatactgctatcga	14	7	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48062801	T	T	48062801	3	4	203	1	0	0	0	0	1	0	0	0	14155	1377	48	3	2154	3	SEMA6D	15	48062801	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3033958	48062801	54468591	439	159951											
ATP8B4	79895	broad.mit.edu	37	chr15	50271905	50271905	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacacagagctcttctctcCttcattccaaaagaggaaag	7	11	3	2	rs140655722		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50271905	A	A	50271905	4	1	203	1	0	0	0	0	0	1	0	0	1201	690	24	2	2703	2	ATP8B4	15	50271905	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2209104	50271905	52259487	440	159952											
PYGO1	26108	broad.mit.edu	37	chr15	55881112	55881112	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgtggacacctgtctgtaGaatgcctccacttggtattt	11	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55881112	C	C	55881112	1	2	203	0	1	0	0	0	0	0	0	0	12971	957	33	4		4	PYGO1	15	55881112	5'Flank	SNP	G	TCGA-73-4658-01A-01D-1753-08	5609207	55881112	46650280	441	159953											
MNS1	55329	broad.mit.edu	37	chr15	56736859	56736859	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	catcatggttttggctatttCagcatcacgtttctgttatt	7	8	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56736859	T	T	56736859	3	4	203	1	0	0	0	0	1	0	0	0	9771	835	29	4	1042	4	MNS1	15	56736859	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	855747	56736859	45794533	442	159954											
DAPK2	23604	broad.mit.edu	37	chr15	64332346	64332346	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggctccctcggcatccccCcacctctcacacagtctcct	5	21	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64332346	G	G	64332346	1	3	203	0	1	0	0	0	0	0	0	0	4269	638	22	4		4	DAPK2	15	64332346	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	7595487	64332346	38199046	443	159955											
ZNF609	23060	broad.mit.edu	37	chr15	64967177	64967177	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcccattcagcccaagccCactgttatgggagaaccttt	8	13	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64967177	A	A	64967177	2	1	203	1	0	0	0	0	0	0	0	1	18162	581	21	2		2	ZNF609	15	64967177	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	634831	64967177	37564215	444	159956											
ZNF609	23060	broad.mit.edu	37	chr15	64967739	64967739	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccatattaccaaggctttGagagttactattctccaagt	6	10	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64967739	C	C	64967739	3	2	203	1	0	0	0	0	1	0	0	0	18162	1291	45	4	2700	4	ZNF609	15	64967739	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	562	64967739	37563653	445	159957											
IGDCC4	57722	broad.mit.edu	37	chr15	65684634	65684634	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccagagatctgggtggggtGagggggtggctgccatgaca	20	7	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65684634	A	A	65684634	3	1	203	1	0	0	0	0	1	0	0	0	7639	1290	45	4	1832	4	IGDCC4	15	65684634	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	716895	65684634	36846758	446	159958											
NEO1	4756	broad.mit.edu	37	chr15	73536718	73536718	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataccagtcacccaggagaGatgcaagtaaccattcaaaa	7	10	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73536718	C	C	73536718	3	2	203	1	0	0	0	0	1	0	0	0	10431	933	33	4	1519	4	NEO1	15	73536718	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	7852084	73536718	28994674	447	159959											
CYP11A1	1583	broad.mit.edu	37	chr15	74636074	74636074	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacatagcgtgggacaaagGagccggctgaggcctggggc	18	9	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74636074	T	T	74636074	1	4	203	0	1	0	0	0	0	0	0	0	4177	1189	41	3		3	CYP11A1	15	74636074	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1099356	74636074	27895318	448	159960											
FAM108C1	58489	broad.mit.edu	37	chr15	81041780	81041780	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggaattttatgggtttaaGaggcgggtttctctgtccct	13	6	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81041780	A	A	81041780	1	1	203	0	1	0	0	0	0	0	0	0	5439	957	33	4		4	FAM108C1	15	81041780	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	6405706	81041780	21489612	449	159961											
TMC3	342125	broad.mit.edu	37	chr15	81626935	81626935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctttttagtaccagctGtcatagtctcctgacccatg	6	11	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81626935	T	T	81626935	1	4	203	0	1	0	0	0	0	0	0	0	16109	1392	48	3		3	TMC3	15	81626935	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	585155	81626935	20904457	450	159962											
ACAN	176	broad.mit.edu	37	chr15	89402294	89402294	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctttgacatttcaagaaggcGaggcgtccgctgccccagaa	11	12	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89402294	C	C	89402294	3	2	203	1	0	0	0	0	1	0	0	0	117	1059	37	4	6520	4	ACAN	15	89402294	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	7775359	89402294	13129098	451	159963											
CHD2	1106	broad.mit.edu	37	chr15	93540598	93540600	+	In_Frame_Del	DEL	ATT	-	-													gctatggaaactgggagttaAttaaaacagacccagagctt							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	93540600	-	-	93540598	7	5	203	1	0	1	0	1	0	0	0	0	3356	101	4	0	3968	0	CHD2	15	93540598	In_Frame_Del	DEL	ATT	TCGA-73-4658-01A-01D-1753-08	4138304	93540598	8990794	452	159964											
IGF1R	3480	broad.mit.edu	37	chr15	99472913	99472913	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgatgtgcaaagttatgaCactttctgtggctgagtggt	13	5	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99472913	T	T	99472913	1	4	203	0	1	0	0	0	0	0	0	0	7641	493	17	4		4	IGF1R	15	99472913	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	5932315	99472913	3058479	453	159965											
RGS11	8786	broad.mit.edu	37	chr16	321456	321456	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcgctttcctgaagtactCgatctaggatgtggggcctg	13	10	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	321456	T	T	321456	3	4	203	1	0	0	0	0	1	0	0	0	13403	893	31	4	740	4	RGS11	16	321456	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08		321456	90033297	454	159966											
CACNA1H	8912	broad.mit.edu	37	chr16	1270419	1270419	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcggcggagctgggcagcGgggagcctggggaggcgaag	22	10	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1270419	A	A	1270419	3	1	203	1	0	0	0	0	1	0	0	0	2571	1116	39	4	6621	4	CACNA1H	16	1270419	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	948963	1270419	89084334	455	159967											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1798834	1798834	+	Intron	DEL	T	-	-													tcagctgtgagctaggaaccTttttttttccagctttgttg							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1798834	-	-	1798834	6	5	203	0	1	1	0	1	0	0	0	0	9378	1624	56	0		0	MAPK8IP3	16	1798834	Intron	DEL	T	TCGA-73-4658-01A-01D-1753-08	528415	1798834	88555919	456	159968											
SPSB3	90864	broad.mit.edu	37	chr16	1828177	1828177	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggtcatcttgatctcccaGaagtgctggccctcccccag	10	15	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1828177	A	A	1828177	2	1	203	1	0	0	0	0	0	0	0	1	15232	933	33	4		4	SPSB3	16	1828177	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	29343	1828177	88526576	457	159969											
PKD1	5310	broad.mit.edu	37	chr16	2153583	2153583	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttggagtccaccagaaagatGagctgcaccacgtcactgag	11	11	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2153583	T	T	2153583	2	4	203	1	0	0	0	0	0	0	0	1	12058	1277	45	3		3	PKD1	16	2153583	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	325406	2153583	88201170	458	159970											
SRRM2	23524	broad.mit.edu	37	chr16	2812607	2812607	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaggagagggaggtctcGgtctaggacaccaagacgag	16	9	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2812607	T	T	2812607	3	4	203	1	0	0	0	0	1	0	0	0	15287	1116	39	1	2116	1	SRRM2	16	2812607	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	659024	2812607	87542146	459	159971											
PRSS33	260429	broad.mit.edu	37	chr16	2836061	2836061	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccgaggtccaggaggggctGactcgggtggactccgaggc	19	11	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2836061	C	C	2836061	1	2	203	0	1	0	0	0	0	0	0	0	12729	1305	45	4		4	PRSS33	16	2836061	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	23454	2836061	87518692	460	159972											
ZNF213	7760	broad.mit.edu	37	chr16	3190770	3190770	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccagacaggcagcgacGtgactgtgtcctggagcccc	14	14	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3190770	T	T	3190770	3	4	203	1	0	0	0	0	1	0	0	0	17895	1145	40	3	820	3	ZNF213	16	3190770	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	354709	3190770	87163983	461	159973											
A2BP1	54715	broad.mit.edu	37	chr16	7568003	7568003	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggtctggtgaagatgacctGagattggtccatctcaggct	14	8	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7568003	A	A	7568003	1	1	203	0	1	0	0	0	0	0	0	0	3	1305	45	4		4	A2BP1	16	7568003	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	4377233	7568003	82786750	462	159974											
A2BP1	54715	broad.mit.edu	37	chr16	7714815	7714815	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccaatgtgaaaacgatcctCggttcctgtgttttggatct	9	9	1	1	rs141719602	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7714815	T	T	7714815	1	4	203	0	1	0	0	0	0	0	0	0	3	899	31	4		4	A2BP1	16	7714815	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	146812	7714815	82639938	463	159975											
USP7	7874	broad.mit.edu	37	chr16	8989494	8989494	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccaacagtatcggggacaGatacctctattcgaaacgtc	9	11	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8989494	C	C	8989494	1	2	203	0	1	0	0	0	0	0	0	0	17215	957	33	4		4	USP7	16	8989494	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1274679	8989494	81365259	464	159976											
USP7	7874	broad.mit.edu	37	chr16	8998387	8998387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgctccaccaactgctgagGaatatcatggtcggtgaccg	11	12	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8998387	T	T	8998387	3	4	203	1	0	0	0	0	1	0	0	0	17215	1174	41	3	1767	3	USP7	16	8998387	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	8893	8998387	81356366	465	159977											
TMC7	79905	broad.mit.edu	37	chr16	19027866	19027866	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggttcctagagaaggctCgagagatgacgacccacctg	13	10	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19027866	A	A	19027866	2	1	203	1	0	0	0	0	0	0	0	1	16113	876	31	3		3	TMC7	16	19027866	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	10029479	19027866	71326887	466	159978											
C16orf62	57020	broad.mit.edu	37	chr16	19644519	19644519	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagatttgcatttctcatttCaacattgttaggaattttgt	6	6	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19644519	A	A	19644519	1	1	203	0	1	0	0	0	0	0	0	0	1839	841	29	3		3	C16orf62	16	19644519	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	616653	19644519	70710234	467	159979											
GPRC5B	51704	broad.mit.edu	37	chr16	19873227	19873227	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttctaaacggagcgctggGtcttttccccaagctgccac	10	14	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19873227	C	C	19873227	3	2	203	1	0	0	0	0	1	0	0	0	6791	1261	44	4	120	4	GPRC5B	16	19873227	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	228708	19873227	70481526	468	159980											
ACSM2A	123876	broad.mit.edu	37	chr16	20487225	20487225	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttattgagcctctatgaaGggacaggtactgagtattga	11	5	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20487225	A	A	20487225	1	1	203	0	1	0	0	0	0	0	0	0	183	1015	35	4		4	ACSM2A	16	20487225	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	613998	20487225	69867528	469	159981											
ERN2	10595	broad.mit.edu	37	chr16	23716548	23716548	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccctctgggtgaggggTcagtctggtgtgtggagatc	18	7	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23716548	A	A	23716548	1	1	203	0	1	0	0	0	0	0	0	0	5280	1682	58	5		5	ERN2	16	23716548	Intron	SNP	T	TCGA-73-4658-01A-01D-1753-08	3229323	23716548	66638205	470	159982											
SLC5A11	115584	broad.mit.edu	37	chr16	24902295	24902295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggctgccccgggaagatgCcttccatattttccgagatc	11	13	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24902295	A	A	24902295	3	1	203	1	0	0	0	0	1	0	0	0	14777	739	26	3	800	3	SLC5A11	16	24902295	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1185747	24902295	65452458	471	159983											
ATXN2L	11273	broad.mit.edu	37	chr16	28844860	28844860	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggagaatgtggactttgGtttctgtggggagacttggg	17	4	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28844860	A	A	28844860	1	1	203	0	1	0	0	0	0	0	0	0	1216	1276	44	4		4	ATXN2L	16	28844860	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3942565	28844860	61509893	472	159984											
PHKB	5257	broad.mit.edu	37	chr16	47623005	47623005	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgctactacaagccagctGaaattaaggtattaaaaaat	7	6	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47623005	A	A	47623005	3	1	203	1	0	0	0	0	1	0	0	0	11940	1291	45	4	1157	4	PHKB	16	47623005	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	18778145	47623005	42731748	473	159985											
ABCC11	85320	broad.mit.edu	37	chr16	48261806	48261806	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtaagctttggatcatgagCggggtgagccatgacacggt	15	8	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48261806	T	T	48261806	2	4	203	1	0	0	0	0	0	0	0	1	51	755	27	4		4	ABCC11	16	48261806	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	638801	48261806	42092947	474	159986											
CES1	1066	broad.mit.edu	37	chr16	55855413	55855413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgaccccagttccccCggctgtgttcatcccctgtg	10	17	1	1	rs60054861	byFrequency;by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55855413	A	A	55855413	3	1	203	1	0	0	0	0	1	0	0	0	3299	652	23	1	1186	1	CES1	16	55855413	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	7593607	55855413	34499340	475	159987											
SLC12A3	6559	broad.mit.edu	37	chr16	56920945	56920945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacaagaggaagatcaaGgccttctactcggatgtcat	10	9	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56920945	T	T	56920945	3	4	203	1	0	0	0	0	1	0	0	0	14497	991	35	2	2184	2	SLC12A3	16	56920945	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1065532	56920945	33433808	476	159988											
CNOT1	23019	broad.mit.edu	37	chr16	58568128	58568128	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagtgcaatgagtcgaaCaaaggcatccaggttgtgat	13	7	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58568128	A	A	58568128	3	1	203	1	0	0	0	0	1	0	0	0	3649	478	17	3	1352	3	CNOT1	16	58568128	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1647183	58568128	31786625	477	159989											
NFATC3	4775	broad.mit.edu	37	chr16	68225105	68225105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctggtttagtgaatcttGgctgtcaaccactgtcatcc	8	10	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68225105	T	T	68225105	3	4	203	1	0	0	0	0	1	0	0	0	10459	1348	47	2	2567	2	NFATC3	16	68225105	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	9656977	68225105	22129648	478	159990											
FTSJD1	55783	broad.mit.edu	37	chr16	71319478	71319478	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaatctcatggaacttacAccatgcttgagtacaaagtt	6	9	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71319478	G	G	71319478	3	3	203	1	0	0	0	0	1	0	0	0	6150	159	6	5	1970	5	FTSJD1	16	71319478	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	3094373	71319478	19035275	479	159991											
TAT	6898	broad.mit.edu	37	chr16	71609796	71609796	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactaaagatttggcagtcaCcaggtatggagtctcaggag	12	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71609796	A	A	71609796	1	1	203	0	1	0	0	0	0	0	0	0	15709	522	18	3		3	TAT	16	71609796	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	290318	71609796	18744957	480	159992											
CNTNAP4	85445	broad.mit.edu	37	chr16	76513396	76513396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatagattcagatggaagtGgtcccctggaaccatttctt	9	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76513396	T	T	76513396	3	4	203	1	0	0	0	0	1	0	0	0	3681	1348	47	2	1902	2	CNTNAP4	16	76513396	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4903600	76513396	13841357	481	159993											
PKD1L2	114780	broad.mit.edu	37	chr16	81183355	81183355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaacatgatgctggtcaGcatggtgcacagcagcaggg	14	10	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81183355	T	T	81183355	3	4	203	1	0	0	0	0	1	0	0	0	12060	962	34	3	2749	3	PKD1L2	16	81183355	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4669959	81183355	9171398	482	159994											
CDK10	8558	broad.mit.edu	37	chr16	89758876	89758876	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaagtgcatcgtgctgcAggtgctccggggcctccagt	15	12	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89758876	C	C	89758876	3	2	203	1	0	0	0	0	1	0	0	0	3155	188	7	5	459	5	CDK10	16	89758876	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	8575521	89758876	595877	483	159995											
CAMKK1	84254	broad.mit.edu	37	chr17	3776779	3776779	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaaagaaacatgctcacatCagtccccaacaggcacagcc	8	14	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3776779	T	T	3776779	1	4	203	0	1	0	0	0	0	0	0	0	2632	841	29	4		4	CAMKK1	17	3776779	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08		3776779	77418431	484	159996											
SPNS3	201305	broad.mit.edu	37	chr17	4337360	4337360	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgtccccctcccatcaCgcccacctcctggagcctgc	8	21	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4337360	T	T	4337360	3	4	203	1	0	0	0	0	1	0	0	0	15194	536	19	4	100	4	SPNS3	17	4337360	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	560581	4337360	76857850	485	159997											
WSCD1	23302	broad.mit.edu	37	chr17	6023892	6023892	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttcaccccggagatgaaaGacttgatcaatggctacatc	8	12	2	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6023892	T	T	6023892	3	4	203	1	0	0	0	0	1	0	0	0	17533	942	33	3	1669	3	WSCD1	17	6023892	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1686532	6023892	75171318	486	159998											
TMEM95	339168	broad.mit.edu	37	chr17	7258657	7258657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggccaggcagaaggaatGtggggcctccccagacttct	15	11	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7258657	T	T	7258657	3	4	203	1	0	0	0	0	1	0	0	0	16346	1377	48	3	136	3	TMEM95	17	7258657	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1234765	7258657	73936553	487	159999											
DNAH2	146754	broad.mit.edu	37	chr17	7701598	7701598	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgactacaccaccttccAgatcgaggtcaccaaacatt	6	15	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7701598	T	T	7701598	3	4	203	1	0	0	0	0	1	0	0	0	4642	188	7	5	8564	5	DNAH2	17	7701598	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	442941	7701598	73493612	488	160000											
CHD3	1107	broad.mit.edu	37	chr17	7803213	7803213	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcaataattatgttggcaGagggaggcacaggtgaagtt	16	4	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7803213	A	A	7803213	5	1	203	1	0	0	0	0	0	0	1	0	3357	956	33	4	2887	4	CHD3	17	7803213	Splice_Site	SNP	G	TCGA-73-4658-01A-01D-1753-08	101615	7803213	73391997	489	160001											
ALOXE3	59344	broad.mit.edu	37	chr17	8018293	8018293	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagttgtcgtctttgtcaAggcaaatttcttgtctgact	8	8	4	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8018293	G	G	8018293	2	3	203	1	0	0	0	0	0	0	0	1	542	69	3	5		5	ALOXE3	17	8018293	Silent	SNP	A	TCGA-73-4658-01A-01D-1753-08	215080	8018293	73176917	490	160002											
WDR16	146845	broad.mit.edu	37	chr17	9503470	9503470	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggactaaactgctgacagaTgttgggcctgcgaaggacaa	13	8	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9503470	A	A	9503470	3	1	203	1	0	0	0	0	1	0	0	0	17403	1461	51	5	745	5	WDR16	17	9503470	Missense_Mutation	SNP	T	TCGA-73-4658-01A-01D-1753-08	1485177	9503470	71691740	491	160003											
MYH1	4619	broad.mit.edu	37	chr17	10404795	10404795	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgctctgcctcgatttcctCctccagctcctcaatgcggg	8	18	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10404795	A	A	10404795	4	1	203	1	0	0	0	0	0	1	0	0	10123	864	30	3	2505	3	MYH1	17	10404795	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	901325	10404795	70790415	492	160004											
KIAA0100	9703	broad.mit.edu	37	chr17	26961560	26961560	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagctcttgacattgcacttGagcattcgacaccactgaat	7	11	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26961560	A	A	26961560	2	1	203	1	0	0	0	0	0	0	0	1	8224	1277	45	4		4	KIAA0100	17	26961560	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	16556765	26961560	54233650	493	160005											
EFCAB5	374786	broad.mit.edu	37	chr17	28405416	28405416	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccacattgagagtctgaGgaattctgccaggcggaaat	13	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28405416	T	T	28405416	3	4	203	1	0	0	0	0	1	0	0	0	4978	1000	35	2	3146	2	EFCAB5	17	28405416	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1443856	28405416	52789794	494	160006											
NF1	4763	broad.mit.edu	37	chr17	29559717	29559717	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcagtctttttatttctcaGatacttcacattatttatga	4	7	4	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29559717	T	T	29559717	5	4	203	1	0	0	0	0	0	0	1	0	10451	956	33	3	3477	3	NF1	17	29559717	Splice_Site	SNP	G	TCGA-73-4658-01A-01D-1753-08	1154301	29559717	51635493	495	160007											
UNC45B	146862	broad.mit.edu	37	chr17	33495435	33495435	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtgccatgccaggcacCagggacaccaaaatgaatga	11	11	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33495435	T	T	33495435	1	4	203	0	1	0	0	0	0	0	0	0	17115	609	21	4		4	UNC45B	17	33495435	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3935718	33495435	47699775	496	160008											
ERBB2	2064	broad.mit.edu	37	chr17	37864870	37864870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagggggaggctttgtgtGcattagaaatggtgtccctt	14	7	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37864870	T	T	37864870	1	4	203	0	1	0	0	0	0	0	0	0	5248	1334	46	3		3	ERBB2	17	37864870	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	4369435	37864870	43330340	497	160009											
IKZF3	22806	broad.mit.edu	37	chr17	37985700	37985700	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccacattttccatttcatGagatttggttaaactgtagt	7	7	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37985700	C	C	37985700	3	2	203	1	0	0	0	0	1	0	0	0	7686	1290	45	4	1450	4	IKZF3	17	37985700	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	120830	37985700	43209510	498	160010											
CNTNAP1	8506	broad.mit.edu	37	chr17	40837357	40837357	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgaggagaaggacggtcttCtgctgcacgccgagggcgcc	16	13	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40837357	G	G	40837357	3	3	203	1	0	0	0	0	1	0	0	0	3678	912	32	4	652	4	CNTNAP1	17	40837357	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2851657	40837357	40357853	499	160011											
CCDC56	28958	broad.mit.edu	37	chr17	40947574	40947574	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgaccttcccctgccatTatccctactcactgtctgtc	4	18	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40947574	C	C	40947574	1	2	203	0	1	0	0	0	0	0	0	0	2854	1769	61	5		5	CCDC56	17	40947574	3'UTR	SNP	T	TCGA-73-4658-01A-01D-1753-08	110217	40947574	40247636	500	160012											
CCDC56	28958	broad.mit.edu	37	chr17	40947590	40947590	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccattatccctactcactgtCtgtcctgtcactgctctcct	4	17	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40947590	G	G	40947590	1	3	203	0	1	0	0	0	0	0	0	0	2854	928	32	4		4	CCDC56	17	40947590	3'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	16	40947590	40247620	501	160013											
KIF2B	84643	broad.mit.edu	37	chr17	51901154	51901154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagtccaagcaaaaggtgGacctcactcgctacctgcag	10	12	1	1	rs142732898	byFrequency;by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51901154	T	T	51901154	3	4	203	1	0	0	0	0	1	0	0	0	8368	1174	41	3	762	3	KIF2B	17	51901154	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	10953564	51901154	29294056	502	160014											
RNF43	54894	broad.mit.edu	37	chr17	56434870	56434870	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtgcggataagggcatGgcctgccctctgcggtgtca	16	11	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56434870	A	A	56434870	3	1	203	1	0	0	0	0	1	0	0	0	13606	1348	47	4	92	4	RNF43	17	56434870	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	4533716	56434870	24760340	503	160015											
HEATR6	63897	broad.mit.edu	37	chr17	58147229	58147230	+	Intron	DEL	AC	-	-													tctaataatgatgaataaggAcacacacacacacacgaaac							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58147230	-	-	58147229	6	5	203	0	1	1	0	1	0	0	0	0	7100	290	10	0		0	HEATR6	17	58147229	Intron	DEL	AC	TCGA-73-4658-01A-01D-1753-08	1712359	58147229	23047981	504	160016											
TBX4	9496	broad.mit.edu	37	chr17	59560581	59560581	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttccccacgcacttcaccGccaccaccatgatgccgcgg	7	21	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59560581	A	A	59560581	3	1	203	1	0	0	0	0	1	0	0	0	15782	1087	38	4	1372	4	TBX4	17	59560581	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1413352	59560581	21634629	505	160017											
INTS2	57508	broad.mit.edu	37	chr17	59949775	59949775	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaggctttagatgcaagaaGatatccattcaacatgtgta	9	6	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59949775	T	T	59949775	3	4	203	1	0	0	0	0	1	0	0	0	7848	942	33	3	985	3	INTS2	17	59949775	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	389194	59949775	21245435	506	160018											
CSH1	1442	broad.mit.edu	37	chr17	61972786	61972786	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atttctctcccccagccctcGaagccagtggggttccagga	10	15	1	0	rs61763998		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61972786	T	T	61972786	1	4	203	0	1	0	0	0	0	0	0	0	3974	1059	37	3		3	CSH1	17	61972786	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	2023011	61972786	19222424	507	160019											
PRKCA	5578	broad.mit.edu	37	chr17	64795341	64795341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtggtgatggtggtgGtggtggtggtggtggtggtg	26	0	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64795341	A	A	64795341	1	1	203	0	1	0	0	0	0	0	0	0	12613	1276	44	4		4	PRKCA	17	64795341	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	2822555	64795341	16399869	508	160020											
CASKIN2	57513	broad.mit.edu	37	chr17	73502640	73502640	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccgcaggcaggtgatgagGaagcgaggggaccccaaggg	18	10	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73502640	A	A	73502640	1	1	203	0	1	0	0	0	0	0	0	0	2693	1189	41	4		4	CASKIN2	17	73502640	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	8707299	73502640	7692570	509	160021											
POTEC	388468	broad.mit.edu	37	chr18	14542921	14542921	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccacgttgctcgtgccGctccccctgcagcaggggaa	13	16	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14542921	T	T	14542921	3	4	203	1	0	0	0	0	1	0	0	0	12358	1078	38	3	1447	3	POTEC	18	14542921	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08		14542921	63534327	510	160022											
DSG2	1829	broad.mit.edu	37	chr18	29104379	29104379	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgtaagagtgactcttttCacccagctggacatttttca	8	9	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29104379	T	T	29104379	1	4	203	0	1	0	0	0	0	0	0	0	4817	841	29	4		4	DSG2	18	29104379	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	14561458	29104379	48972869	511	160023											
C18orf34	374864	broad.mit.edu	37	chr18	30991959	30991959	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattccatttatctatgaaCtattttcaaagaaaatcaat	3	6	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30991959	T	T	30991959	1	4	203	0	1	0	0	0	0	0	0	0	1920	580	20	4		4	C18orf34	18	30991959	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1887580	30991959	47085289	512	160024											
VPS4B	9525	broad.mit.edu	37	chr18	61067251	61067251	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacagagtgagactccgtctCaaaaagaaaaaaaaaattag	8	6	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61067251	G	G	61067251	1	3	203	0	1	0	0	0	0	0	0	0	17340	841	29	4		4	VPS4B	18	61067251	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	30075292	61067251	17009997	513	160025											
MIER2	54531	broad.mit.edu	37	chr19	334524	334524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaggttgaactgatggtctCcagagcccatggacaccact	11	12	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	334524	A	A	334524	3	1	203	1	0	0	0	0	1	0	0	0	9674	855	30	3	1566	3	MIER2	19	334524	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08		334524	58794459	514	160026											
DOT1L	84444	broad.mit.edu	37	chr19	2199823	2199823	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttcttcacaggggctgGgcgggctgggagtgccaggg	18	9	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2199823	T	T	2199823	1	4	203	0	1	0	0	0	0	0	0	0	4749	1247	43	2		2	DOT1L	19	2199823	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1865299	2199823	56929160	515	160027											
MATK	4145	broad.mit.edu	37	chr19	3778291	3778291	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttctcggccagtttgcGgaagggtggccggcgggcgg	19	11	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3778291	A	A	3778291	3	1	203	1	0	0	0	0	1	0	0	0	9424	1116	39	4	113	4	MATK	19	3778291	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1578468	3778291	55350692	516	160028											
EMR1	2015	broad.mit.edu	37	chr19	6937293	6937293	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcccagctcttcatcctGggctgctcctgggtgctggg	13	13	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6937293	T	T	6937293	2	4	203	1	0	0	0	0	0	0	0	1	5146	1335	47	2		2	EMR1	19	6937293	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	3159002	6937293	52191690	517	160029											
MUC16	94025	broad.mit.edu	37	chr19	8976428	8976428	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtggctgccccatccttctCaggcctggggagagaggcat	14	12	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8976428	G	G	8976428	3	3	203	1	0	0	0	0	1	0	0	0	10067	835	29	4	1163	4	MUC16	19	8976428	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	2039135	8976428	50152555	518	160030											
MUC16	94025	broad.mit.edu	37	chr19	9077953	9077953	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactatcattcatttcctccCgggatttcaattaaaactat	3	11	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9077953	G	G	9077953	1	3	203	0	1	0	0	0	0	0	0	0	10067	667	23	4		4	MUC16	19	9077953	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	101525	9077953	50051030	519	160031											
OLFM2	93145	broad.mit.edu	37	chr19	9968409	9968409	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctggaagctcttggccgaGagggacccatcagctgcccg	13	14	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9968409	A	A	9968409	2	1	203	1	0	0	0	0	0	0	0	1	10948	929	33	4		4	OLFM2	19	9968409	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	890456	9968409	49160574	520	160032											
ZNF439	90594	broad.mit.edu	37	chr19	11978433	11978433	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaagggatcacactggaaaGaaaccctatgcttgtaaaga	10	7	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11978433	C	C	11978433	3	2	203	1	0	0	0	0	1	0	0	0	18038	933	33	4	559	4	ZNF439	19	11978433	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2010024	11978433	47150550	521	160033											
NOTCH3	4854	broad.mit.edu	37	chr19	15290919	15290919	+	Frame_Shift_Del	DEL	C	-	-													cccatatagccacggcaggtCcccccatgctggcagggctg							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15290919	-	-	15290919	7	5	203	1	0	1	0	1	0	0	0	0	10645	842	30	0	3730	0	NOTCH3	19	15290919	Frame_Shift_Del	DEL	C	TCGA-73-4658-01A-01D-1753-08	3312486	15290919	43838064	522	160034											
CYP4F3	4051	broad.mit.edu	37	chr19	15769201	15769201	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccagacggccgggtcatcCccaaaggtgccacagcctca	10	17	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15769201	T	T	15769201	3	4	203	1	0	0	0	0	1	0	0	0	4223	623	22	4	1277	4	CYP4F3	19	15769201	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	478282	15769201	43359782	523	160035											
KIAA1683	80726	broad.mit.edu	37	chr19	18376264	18376264	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttggtcagctcagtgggcaGatgtccctgagatgaggcct	14	10	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18376264	A	A	18376264	2	1	203	1	0	0	0	0	0	0	0	1	8321	933	33	4		4	KIAA1683	19	18376264	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	2607063	18376264	40752719	524	160036											
ZNF486	90649	broad.mit.edu	37	chr19	20296723	20296723	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatattttattacattctttCtgctgagcacattactagct	4	8	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20296723	G	G	20296723	1	3	203	0	1	0	0	0	0	0	0	0	18066	928	32	4		4	ZNF486	19	20296723	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1920459	20296723	38832260	525	160037											
ZNF493	284443	broad.mit.edu	37	chr19	21606273	21606273	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaatgtgaagaatgtgGcacatctttctaccaattct	6	9	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21606273	A	A	21606273	3	1	203	1	0	0	0	0	1	0	0	0	18071	1203	42	4	889	4	ZNF493	19	21606273	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1309550	21606273	37522710	526	160038											
ZNF676	163223	broad.mit.edu	37	chr19	22364130	22364130	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtatgccttatcttatgtCtgtttgaatttgaacattta	6	6	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22364130	G	G	22364130	3	3	203	1	0	0	0	0	1	0	0	0	18210	913	32	4	1381	4	ZNF676	19	22364130	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	757857	22364130	36764853	527	160039											
ZNF91	7644	broad.mit.edu	37	chr19	23545212	23545212	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtgtaaacggatgcaaaatGacttgacacattttttacat	7	6	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23545212	A	A	23545212	3	1	203	1	0	0	0	0	1	0	0	0	18329	1294	45	4	3010	4	ZNF91	19	23545212	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1181082	23545212	35583771	528	160040											
UBA2	10054	broad.mit.edu	37	chr19	34934859	34934859	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttttatcagatactattatCtttattttgttgatttaatt	4	3	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34934859	G	G	34934859	1	3	203	0	1	0	0	0	0	0	0	0	16954	928	32	4		4	UBA2	19	34934859	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	11389647	34934859	24194124	529	160041											
MEGF8	1954	broad.mit.edu	37	chr19	42854232	42854232	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggctccaaacccttactttCagttagcgccagactctgac	8	14	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42854232	T	T	42854232	1	4	203	0	1	0	0	0	0	0	0	0	9556	841	29	4		4	MEGF8	19	42854232	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	7919373	42854232	16274751	530	160042											
PHLDB3	653583	broad.mit.edu	37	chr19	44001226	44001226	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcacagagcaggggagacaGagaggagcagcaaggggggc	21	7	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44001226	C	C	44001226	1	2	203	0	1	0	0	0	0	0	0	0	11948	957	33	4		4	PHLDB3	19	44001226	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1146994	44001226	15127757	531	160043											
FOSB	2354	broad.mit.edu	37	chr19	45973886	45973886	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtatgtgtcaccccgtaGgagtgcgccggtctcgggga	16	10	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45973886	A	A	45973886	5	1	203	1	0	0	0	0	0	0	1	0	6044	1014	35	4	132	4	FOSB	19	45973886	Splice_Site	SNP	G	TCGA-73-4658-01A-01D-1753-08	1972660	45973886	13155097	532	160044											
OPA3	80207	broad.mit.edu	37	chr19	46032614	46032614	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccctcgcccagcagctcCgcgcccagctcggcggctgc	12	20	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46032614	A	A	46032614	2	1	203	1	0	0	0	0	0	0	0	1	10966	639	23	1		1	OPA3	19	46032614	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	58728	46032614	13096369	533	160045											
C5AR1	728	broad.mit.edu	37	chr19	47823845	47823847	+	In_Frame_Del	DEL	TCG	-	-													tgatgtccttcctggagccaTcgtcacccaccttcctgctg							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47823847	-	-	47823845	7	5	203	1	0	1	0	1	0	0	0	0	2304	1435	50	0	816	0	C5AR1	19	47823845	In_Frame_Del	DEL	TCG	TCGA-73-4658-01A-01D-1753-08	1791231	47823845	11305138	534	160046											
NUCB1	4924	broad.mit.edu	37	chr19	49424449	49424449	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctacaccgaggaagagctGaggcgctttgaagaggagct	15	9	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49424449	A	A	49424449	2	1	203	1	0	0	0	0	0	0	0	1	10813	1277	45	4		4	NUCB1	19	49424449	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	1600604	49424449	9704534	535	160047											
NUCB1	4924	broad.mit.edu	37	chr19	49425018	49425018	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagtctccgtttggggactGaggcctgagcacttgcaatg	14	9	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49425018	C	C	49425018	1	2	203	0	1	0	0	0	0	0	0	0	10813	1305	45	4		4	NUCB1	19	49425018	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	569	49425018	9703965	536	160048											
ZNF468	90333	broad.mit.edu	37	chr19	53357494	53357494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagacagaacaatccacCgaggatatcatctcacctga	8	11	2	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53357494	A	A	53357494	1	1	203	0	1	0	0	0	0	0	0	0	18055	667	23	1		1	ZNF468	19	53357494	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	3932476	53357494	5771489	537	160049											
LILRB1	10859	broad.mit.edu	37	chr19	55147116	55147116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtgccagatctaatcCtgcagaacttctctgtcctc	7	14	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55147116	A	A	55147116	1	1	203	0	1	0	0	0	0	0	0	0	8862	696	24	2		2	LILRB1	19	55147116	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1789622	55147116	3981867	538	160050											
NLRP13	126204	broad.mit.edu	37	chr19	56413549	56413549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtgcttgcaagcgggtgCtgccagctggcaaaaccaga	13	11	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56413549	A	A	56413549	3	1	203	1	0	0	0	0	1	0	0	0	10570	797	28	3	500	3	NLRP13	19	56413549	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1266433	56413549	2715434	539	160051											
NLRP8	126205	broad.mit.edu	37	chr19	56482063	56482063	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccagctggagaggctgtcGtaagtctcctttctagtggc	13	11	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56482063	A	A	56482063	5	1	203	1	0	0	0	0	0	0	1	0	10578	1159	40	4	2557	4	NLRP8	19	56482063	Splice_Site	SNP	G	TCGA-73-4658-01A-01D-1753-08	68514	56482063	2646920	540	160052											
USP29	57663	broad.mit.edu	37	chr19	57640047	57640047	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttacataaagaaaggatgAtatctctaaaggtatgtgga	11	3	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57640047	T	T	57640047	3	4	203	1	0	0	0	0	1	0	0	0	17186	333	12	5	6	5	USP29	19	57640047	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	1157984	57640047	1488936	541	160053											
ZSCAN22	342945	broad.mit.edu	37	chr19	58849907	58849907	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctcgaggaacagttctAgtgcgtggccaaacctcacc	11	13	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58849907	G	G	58849907	3	3	203	1	0	0	0	0	1	0	0	0	18363	420	15	5	697	5	ZSCAN22	19	58849907	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	1209860	58849907	279076	542	160054											
ATRN	8455	broad.mit.edu	37	chr20	3556430	3556430	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcggtctcagattttgctCaattgaagttgtcccagttc	8	10	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3556430	T	T	3556430	1	4	203	0	1	0	0	0	0	0	0	0	1210	841	29	4		4	ATRN	20	3556430	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08		3556430	59469090	543	160055											
RASSF2	9770	broad.mit.edu	37	chr20	4773290	4773290	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttctgggagtggagaagaCaaaggggaggggggagacta	21	3	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4773290	G	G	4773290	1	3	203	0	1	0	0	0	0	0	0	0	13194	493	17	4		4	RASSF2	20	4773290	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1216860	4773290	58252230	544	160056											
PLCB1	23236	broad.mit.edu	37	chr20	8130941	8130941	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtttcttcttacatttctagGactcaactattgttactcca	4	10	4	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8130941	C	C	8130941	3	2	203	1	0	0	0	0	1	0	0	0	12122	1188	41	4	106	4	PLCB1	20	8130941	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3357651	8130941	54894579	545	160057											
PLCB1	23236	broad.mit.edu	37	chr20	8709845	8709845	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtacatgcttgttcccattCtgctatgaactcacattgcc	6	12	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8709845	T	T	8709845	1	4	203	0	1	0	0	0	0	0	0	0	12122	928	32	4		4	PLCB1	20	8709845	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	578904	8709845	54315675	546	160058											
PLCB4	5332	broad.mit.edu	37	chr20	9417782	9417782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggctgccctggcctctgGtgtggaagccaagaaaggtg	15	11	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9417782	T	T	9417782	3	4	203	1	0	0	0	0	1	0	0	0	12125	1261	44	3	2853	3	PLCB4	20	9417782	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	707937	9417782	53607738	547	160059											
C20orf26	26074	broad.mit.edu	37	chr20	20150172	20150172	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agagaagggaacaaggaactCcctgctattataatttaata	8	6	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20150172	G	G	20150172	1	3	203	0	1	0	0	0	0	0	0	0	2128	870	30	4		4	C20orf26	20	20150172	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	10732390	20150172	42875348	548	160060											
ASXL1	171023	broad.mit.edu	37	chr20	31019382	31019382	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttcccccttgatccttCtaggtggggacggatggcct	11	11	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31019382	G	G	31019382	1	3	203	0	1	0	0	0	0	0	0	0	1070	928	32	4		4	ASXL1	20	31019382	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	10869210	31019382	32006138	549	160061											
AHCY	191	broad.mit.edu	37	chr20	32878107	32878107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctgcactcccatctgcCcagcccactggcaaggcggg	10	18	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32878107	A	A	32878107	1	1	203	0	1	0	0	0	0	0	0	0	409	638	22	2		2	AHCY	20	32878107	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1858725	32878107	30147413	550	160062											
TRPC4AP	26133	broad.mit.edu	37	chr20	33665863	33665863	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttaccttgaggatgttttGacactcaacaaagtcactgt	8	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33665863	C	C	33665863	3	2	203	1	0	0	0	0	1	0	0	0	16706	1299	45	4	2182	4	TRPC4AP	20	33665863	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	787756	33665863	29359657	551	160063											
ERGIC3	51614	broad.mit.edu	37	chr20	34143975	34143975	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtgctttgttttcccctCagcctccatgatgttccagt	7	14	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34143975	T	T	34143975	1	4	203	0	1	0	0	0	0	0	0	0	5267	841	29	4		4	ERGIC3	20	34143975	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	478112	34143975	28881545	552	160064											
NFS1	9054	broad.mit.edu	37	chr20	34262526	34262526	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctctgacaactttgagattCgcttgtggtcatactaagga	10	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34262526	T	T	34262526	3	4	203	1	0	0	0	0	1	0	0	0	10480	884	31	4	431	4	NFS1	20	34262526	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	118551	34262526	28762994	553	160065											
KIAA1755	85449	broad.mit.edu	37	chr20	36888966	36888966	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcggggtctgtgggtccgCgggtccgtctgtctggggca	20	11	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36888966	T	T	36888966	1	4	203	0	1	0	0	0	0	0	0	0	8327	783	27	4		4	KIAA1755	20	36888966	5'UTR	SNP	C	TCGA-73-4658-01A-01D-1753-08	2626440	36888966	26136554	554	160066											
EMILIN3	90187	broad.mit.edu	37	chr20	39990047	39990047	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catggctccacaggccctctCtgggcctcagtggctcagtg	12	15	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39990047	A	A	39990047	3	1	203	1	0	0	0	0	1	0	0	0	5137	913	32	3	142	3	EMILIN3	20	39990047	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3101081	39990047	23035473	555	160067											
SFRS6	6431	broad.mit.edu	37	chr20	42088452	42088452	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcggagaacatctggcagaGacaaatacggaccacctgtt	11	10	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42088452	A	A	42088452	3	1	203	1	0	0	0	0	1	0	0	0	14294	942	33	4	308	4	SFRS6	20	42088452	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2098405	42088452	20937068	556	160068											
SFRS6	6431	broad.mit.edu	37	chr20	42088829	42088829	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagaaatattaggcttattGaagataagccacgcacaagc	9	8	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42088829	A	A	42088829	3	1	203	1	0	0	0	0	1	0	0	0	14294	1291	45	4	552	4	SFRS6	20	42088829	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	377	42088829	20936691	557	160069											
L3MBTL	26013	broad.mit.edu	37	chr20	42162660	42162660	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctccagactacccagaccCtgataacttctgttgggaga	8	13	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42162660	T	T	42162660	3	4	203	1	0	0	0	0	1	0	0	0	8663	681	24	4	1298	4	L3MBTL	20	42162660	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	73831	42162660	20862860	558	160070											
EEF1A2	1917	broad.mit.edu	37	chr20	62126429	62126429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaactcgcccacgcccgccGccacgatcagcactgcgcag	10	20	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62126429	T	T	62126429	3	4	203	1	0	0	0	0	1	0	0	0	4964	1087	38	3	1061	3	EEF1A2	20	62126429	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	19963769	62126429	899091	559	160071											
ITSN1	6453	broad.mit.edu	37	chr21	35229122	35229122	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccacgagctcattgtcacCgaggagaactatgtgaatga	10	9	2	3	rs142988236		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35229122	T	T	35229122	2	4	203	1	0	0	0	0	0	0	0	1	7996	639	23	4		4	ITSN1	21	35229122	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08		35229122	12900773	560	160072											
COL6A1	1291	broad.mit.edu	37	chr21	47410956	47410956	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggactgaaaggagaaaagGtgagtgacttgcggcccctg	15	7	0	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47410956	A	A	47410956	5	1	203	1	0	0	0	0	0	0	1	0	3731	1275	44	4	1178	4	COL6A1	21	47410956	Splice_Site	SNP	G	TCGA-73-4658-01A-01D-1753-08	12181834	47410956	718939	561	160073											
GAB4	128954	broad.mit.edu	37	chr22	17445758	17445758	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtcaaaggtgtggctgtcAtgggaagaaggcaaggagta	17	4	2	1	rs139065020		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17445758	T	T	17445758	1	4	203	0	1	0	0	0	0	0	0	0	6211	232	8	5		5	GAB4	22	17445758	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08		17445758	33858808	562	160074											
EWSR1	2130	broad.mit.edu	37	chr22	29693786	29693786	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgaacagggagtacagggGagtaattgatgttctgttgt	16	3	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29693786	T	T	29693786	1	4	203	0	1	0	0	0	0	0	0	0	5338	1189	41	3		3	EWSR1	22	29693786	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	12248028	29693786	21610780	563	160075											
TBC1D10A	83874	broad.mit.edu	37	chr22	30688415	30688415	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagctctcctgggagcgGtggtgggctgagacctgggg	19	9	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30688415	T	T	30688415	3	4	203	1	0	0	0	0	1	0	0	0	15717	1252	44	3	54	3	TBC1D10A	22	30688415	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	994629	30688415	20616151	564	160076											
LARGE	9215	broad.mit.edu	37	chr22	33700318	33700318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgttgcgcagcaggttcaCggggtagaactggccctcct	13	13	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33700318	A	A	33700318	3	1	203	1	0	0	0	0	1	0	0	0	8699	536	19	3	659	3	LARGE	22	33700318	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	3011903	33700318	17604248	565	160077											
CSNK1E	1454	broad.mit.edu	37	chr22	38696822	38696822	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgctggtgggtgcgggcgtCccggtacttcttggccaggc	18	11	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38696822	T	T	38696822	3	4	203	1	0	0	0	0	1	0	0	0	3987	855	30	4	802	4	CSNK1E	22	38696822	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4996504	38696822	12607744	566	160078											
EP300	2033	broad.mit.edu	37	chr22	41568699	41568699	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtttcctttgaaacttctAtcatgattctaatatttaat	4	6	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41568699	T	T	41568699	1	4	203	0	1	0	0	0	0	0	0	0	5190	464	16	5		5	EP300	22	41568699	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	2871877	41568699	9735867	567	160079											
EFCAB6	64800	broad.mit.edu	37	chr22	43936306	43936306	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtcgcacctgtgccagCgagaagtgggacaggccggc	16	13	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43936306	T	T	43936306	1	4	203	0	1	0	0	0	0	0	0	0	4979	783	27	4		4	EFCAB6	22	43936306	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	2367607	43936306	7368260	568	160080											
FRMPD4	9758	broad.mit.edu	37	chrX	12627781	12627781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagagaatatgattgccaGgccaatgcctaagacataca	8	8	0	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12627781	T	T	12627781	1	4	203	0	1	0	0	0	0	0	0	0	6119	1015	35	2		2	FRMPD4	23	12627781	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08		12627781	142642779	569	160081											
PIR	8544	broad.mit.edu	37	chrX	15425673	15425673	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaatgaagcttgtccaccCtggaaaggaccagcaacatt	9	10	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15425673	A	A	15425673	5	1	203	1	0	0	0	0	0	0	1	0	12039	695	24	2	323	2	PIR	23	15425673	Splice_Site	SNP	C	TCGA-73-4658-01A-01D-1753-08	2797892	15425673	139844887	570	160082											
ACE2	59272	broad.mit.edu	37	chrX	15584413	15584413	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcagttctaggaatgatatCagacacatttttaggtgcag	9	6	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15584413	T	T	15584413	3	4	203	1	0	0	0	0	1	0	0	0	137	826	29	4	352	4	ACE2	23	15584413	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	158740	15584413	139686147	571	160083											
AP1S2	8905	broad.mit.edu	37	chrX	15870449	15870449	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttgattctatttcacctttCtgacaaacaaaaattatacc	2	9	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15870449	G	G	15870449	1	3	203	0	1	0	0	0	0	0	0	0	739	928	32	4		4	AP1S2	23	15870449	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	286036	15870449	139400111	572	160084											
PHKA2	5256	broad.mit.edu	37	chrX	18936753	18936753	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttatgtccctgcattactttGataaaagaaggtattttaac	6	6	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18936753	A	A	18936753	1	1	203	0	1	0	0	0	0	0	0	0	11939	1305	45	4		4	PHKA2	23	18936753	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	3066304	18936753	136333807	573	160085											
SAT1	6303	broad.mit.edu	37	chrX	23803931	23803931	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagggttggagactgttcaaGatcgacaaggagtacttgct	14	6	1	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23803931	A	A	23803931	2	1	203	1	0	0	0	0	0	0	0	1	13963	933	33	4		4	SAT1	23	23803931	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	4867178	23803931	131466629	574	160086											
POLA1	5422	broad.mit.edu	37	chrX	24806705	24806705	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgaatgcttctgacgCgctcctctaatttcgccata	7	13	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24806705	T	T	24806705	1	4	203	0	1	0	0	0	0	0	0	0	12282	783	27	4		4	POLA1	23	24806705	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1002774	24806705	130463855	575	160087											
DMD	1756	broad.mit.edu	37	chrX	31525341	31525341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttgtgctaagacaatgaGgaaaatttggccattttaat	8	5	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31525341	A	A	31525341	1	1	203	0	1	0	0	0	0	0	0	0	4620	1015	35	4		4	DMD	23	31525341	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	6718636	31525341	123745219	576	160088											
CXorf59	286464	broad.mit.edu	37	chrX	36090127	36090128	+	Intron	DNP	CC	AA	AA													gtgtactttccaaaattagtCcatgacatgatctccttaat							TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36090128	AA	AA	36090127	1	1	203	0	1	0	0	0	0	0	0	0	4148	870	30	3		3	CXorf59	23	36090127	Intron	DNP	CC	TCGA-73-4658-01A-01D-1753-08	4564786	36090127	119180433	577	160089											
SYN1	6853	broad.mit.edu	37	chrX	47435887	47435887	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccttccagggctttggtctCtccactcacatgtaggcctt	8	15	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47435887	T	T	47435887	1	4	203	0	1	0	0	0	0	0	0	0	15559	928	32	4		4	SYN1	23	47435887	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	11345760	47435887	107834673	578	160090											
SSX7	280658	broad.mit.edu	37	chrX	52682477	52682477	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggatcttctctggtatttGagcaccagccctaggtctcc	9	12	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52682477	C	C	52682477	3	2	203	1	0	0	0	0	1	0	0	0	15327	1299	45	4	544	4	SSX7	23	52682477	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	5246590	52682477	102588083	579	160091											
TRO	7216	broad.mit.edu	37	chrX	54949608	54949608	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaaggctgcaaataagGccatagctagtgccaccgag	11	10	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54949608	T	T	54949608	3	4	203	1	0	0	0	0	1	0	0	0	16699	1203	42	3	649	3	TRO	23	54949608	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	2267131	54949608	100320952	580	160092											
OPHN1	4983	broad.mit.edu	37	chrX	67414174	67414174	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catttaaaaaatatatggctGaattttatttcacacaaagg	5	5	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67414174	A	A	67414174	1	1	203	0	1	0	0	0	0	0	0	0	10969	1305	45	4		4	OPHN1	23	67414174	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	12464566	67414174	87856386	581	160093											
TAF1	6872	broad.mit.edu	37	chrX	70598761	70598761	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagctgcattgggaggatGatatcatctgggatggggag	16	6	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70598761	A	A	70598761	3	1	203	1	0	0	0	0	1	0	0	0	15632	1290	45	4	1330	4	TAF1	23	70598761	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3184587	70598761	84671799	582	160094											
ACRC	93953	broad.mit.edu	37	chrX	70823695	70823695	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgatgattcggatgttcccGacgacaacagtgatgattca	11	8	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823695	A	A	70823695	3	1	203	1	0	0	0	0	1	0	0	0	171	1058	37	4	594	4	ACRC	23	70823695	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	224934	70823695	84446865	583	160095											
PHKA1	5255	broad.mit.edu	37	chrX	71840676	71840676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctcccttctgtgaggtaGgggctagtttaggatgggga	16	8	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71840676	T	T	71840676	3	4	203	1	0	0	0	0	1	0	0	0	11938	1000	35	2	1691	2	PHKA1	23	71840676	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1016981	71840676	83429884	584	160096											
MAGEE1	57692	broad.mit.edu	37	chrX	75649049	75649049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccgcccaccgccactgaGggcctaagcacccccgtgcc	11	20	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75649049	T	T	75649049	3	4	203	1	0	0	0	0	1	0	0	0	9277	991	35	2	728	2	MAGEE1	23	75649049	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	3808373	75649049	79621511	585	160097											
PGK1	5230	broad.mit.edu	37	chrX	77378659	77378659	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgttcttagtatagatGctgacctccatcattttggc	8	9	3	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77378659	C	C	77378659	1	2	203	0	1	0	0	0	0	0	0	0	11885	1334	46	4		4	PGK1	23	77378659	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1729610	77378659	77891901	586	160098											
P2RY10	27334	broad.mit.edu	37	chrX	78216425	78216425	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaaggtgcttttttctcctCaagcccttcagggccagaga	9	12	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78216425	G	G	78216425	2	3	203	1	0	0	0	0	0	0	0	1	11441	813	29	4		4	P2RY10	23	78216425	Silent	SNP	C	TCGA-73-4658-01A-01D-1753-08	837766	78216425	77054135	587	160099											
ZNF711	7552	broad.mit.edu	37	chrX	84520344	84520344	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagatacaagcactgtAtaggaacaaagttcaataaa	7	7	2	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84520344	G	G	84520344	1	3	203	0	1	0	0	0	0	0	0	0	18244	464	16	5		5	ZNF711	23	84520344	Intron	SNP	A	TCGA-73-4658-01A-01D-1753-08	6303919	84520344	70750216	588	160100											
DACH2	117154	broad.mit.edu	37	chrX	85906102	85906102	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgaagcttatggctatgaAcactcttcagggaaatggaa	11	6	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85906102	T	T	85906102	3	4	203	1	0	0	0	0	1	0	0	0	4254	43	2	5	718	5	DACH2	23	85906102	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	1385758	85906102	69364458	589	160101											
KLHL4	56062	broad.mit.edu	37	chrX	86880597	86880597	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tccattcatataccatgcatCactacttttcagttactggc	4	12	3	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86880597	T	T	86880597	1	4	203	0	1	0	0	0	0	0	0	0	8462	841	29	4		4	KLHL4	23	86880597	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	974495	86880597	68389963	590	160102											
GPRASP1	9737	broad.mit.edu	37	chrX	101910606	101910606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggttttgggctgaaaacCagacctatatggattgtagg	12	7	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101910606	A	A	101910606	3	1	203	1	0	0	0	0	1	0	0	0	6788	595	21	2	1767	2	GPRASP1	23	101910606	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	15030009	101910606	53359954	591	160103											
VSIG1	340547	broad.mit.edu	37	chrX	107315990	107315990	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctgtctctctgcgcttGgaacaccttcccctgtgtac	7	15	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107315990	T	T	107315990	4	4	203	1	0	0	0	0	0	1	0	0	17349	1349	47	2	622	2	VSIG1	23	107315990	Nonsense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	5405384	107315990	47954570	592	160104											
CXorf56	63932	broad.mit.edu	37	chrX	118678385	118678385	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctggccaaacttgactacTgctccatccacaatgaaggt	7	14	0	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118678385	C	C	118678385	2	2	203	1	0	0	0	0	0	0	0	1	4145	1567	55	5		5	CXorf56	23	118678385	Silent	SNP	T	TCGA-73-4658-01A-01D-1753-08	11362395	118678385	36592175	593	160105											
ODZ1	10178	broad.mit.edu	37	chrX	123526198	123526198	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaggtttctgttgtgggCctatgagaaagagatatgaa	14	3	1	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123526198	A	A	123526198	3	1	203	1	0	0	0	0	1	0	0	0	10929	753	26	3	2826	3	ODZ1	23	123526198	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4847813	123526198	31744362	594	160106											
ODZ1	10178	broad.mit.edu	37	chrX	124030091	124030091	+	Splice_Site	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtttcacagaattccatctCtgagaagaaacaaagttcag	8	8	3	3			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124030091	T	T	124030091	5	4	203	1	0	0	0	0	0	0	1	0	10929	927	32	4	8105	4	ODZ1	23	124030091	Splice_Site	SNP	C	TCGA-73-4658-01A-01D-1753-08	503893	124030091	31240469	595	160107											
OCRL	4952	broad.mit.edu	37	chrX	128703214	128703214	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcttgtgtgatatgttctCtttataactcgtttctttac	6	7	3	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128703214	G	G	128703214	1	3	203	0	1	0	0	0	0	0	0	0	10918	928	32	4		4	OCRL	23	128703214	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	4673123	128703214	26567346	596	160108											
SASH3	54440	broad.mit.edu	37	chrX	128926927	128926927	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctaggcaggggtggctGgtaagcagctgtgccgatgg	19	8	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128926927	T	T	128926927	1	4	203	0	1	0	0	0	0	0	0	0	13961	1363	47	2		2	SASH3	23	128926927	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	223713	128926927	26343633	597	160109											
ZDHHC9	51114	broad.mit.edu	37	chrX	128962912	128962912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccattctcttactgattagGgccacccactacacagcagc	6	15	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128962912	T	T	128962912	1	4	203	0	1	0	0	0	0	0	0	0	17748	1247	43	2		2	ZDHHC9	23	128962912	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	35985	128962912	26307648	598	160110											
UTP14A	10813	broad.mit.edu	37	chrX	129060313	129060313	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acatccacgcagctgctcatCaggtgagagcttagagagct	11	11	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129060313	T	T	129060313	4	4	203	1	0	0	0	0	0	1	0	0	17222	827	29	4	2095	4	UTP14A	23	129060313	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	97401	129060313	26210247	599	160111											
IGSF1	3547	broad.mit.edu	37	chrX	130416851	130416851	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacaaattctgctcccttctCtactgttaaccctggccaca	4	15	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130416851	G	G	130416851	1	3	203	0	1	0	0	0	0	0	0	0	7666	928	32	4		4	IGSF1	23	130416851	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	1356538	130416851	24853709	600	160112											
OR13H1	347468	broad.mit.edu	37	chrX	130678286	130678286	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaacagcttccatgccccAggctttggtgcattgtttct	10	11	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130678286	T	T	130678286	3	4	203	1	0	0	0	0	1	0	0	0	11037	188	7	5	241	5	OR13H1	23	130678286	Missense_Mutation	SNP	A	TCGA-73-4658-01A-01D-1753-08	261435	130678286	24592274	601	160113											
GPC4	2239	broad.mit.edu	37	chrX	132458235	132458235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagcgaaagtacgggctgCtacaaaagcacgagtaacct	11	9	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132458235	A	A	132458235	3	1	203	1	0	0	0	0	1	0	0	0	6665	797	28	3	1049	3	GPC4	23	132458235	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1779949	132458235	22812325	602	160114											
HPRT1	3251	broad.mit.edu	37	chrX	133609244	133609244	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcgagatgtgatgaaggaGatgggaggccatcacattgt	15	6	1	4			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133609244	T	T	133609244	3	4	203	1	0	0	0	0	1	0	0	0	7405	933	33	3	178	3	HPRT1	23	133609244	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1151009	133609244	21661316	603	160115											
SAGE1	55511	broad.mit.edu	37	chrX	134987334	134987334	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggataatttcctagaaaccGagcatcagtgggatatactg	11	7	1	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134987334	T	T	134987334	1	4	203	0	1	0	0	0	0	0	0	0	13920	1073	37	3		3	SAGE1	23	134987334	Intron	SNP	G	TCGA-73-4658-01A-01D-1753-08	1378090	134987334	20283226	604	160116											
SLC9A6	10479	broad.mit.edu	37	chrX	135098878	135098878	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgacactgttcaccttccaGaaccatgtctttaacccaac	4	15	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135098878	A	A	135098878	2	1	203	1	0	0	0	0	0	0	0	1	14832	933	33	4		4	SLC9A6	23	135098878	Silent	SNP	G	TCGA-73-4658-01A-01D-1753-08	111544	135098878	20171682	605	160117											
ZIC3	7547	broad.mit.edu	37	chrX	136649310	136649310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgctccagctggcatcCccgagccccctagctacttg	9	17	0	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136649310	A	A	136649310	3	1	203	1	0	0	0	0	1	0	0	0	17806	623	22	2	462	2	ZIC3	23	136649310	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1550432	136649310	18621250	606	160118											
FGF13	2258	broad.mit.edu	37	chrX	137793040	137793040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccgggaaaagacatttaaCttgtttttgtcgcagctggt	10	8	0	1			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137793040	A	A	137793040	3	1	203	1	0	0	0	0	1	0	0	0	5899	564	20	3	631	3	FGF13	23	137793040	Missense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	1143730	137793040	17477520	607	160119											
FMR1NB	158521	broad.mit.edu	37	chrX	147063058	147063058	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agagcagccatcctggatacGaggccgccatggctgacagg	14	12	0	2	rs149919226		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147063058	C	C	147063058	3	2	203	1	0	0	0	0	1	0	0	0	6019	1059	37	4	138	4	FMR1NB	23	147063058	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	9270018	147063058	8207502	608	160120											
MAGEA3	4102	broad.mit.edu	37	chrX	151935329	151935329	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gactttcacatagctggtttCaacgagggcccttggacccc	10	13	2	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151935329	A	A	151935329	4	1	203	1	0	0	0	0	0	1	0	0	9257	835	29	3	110	3	MAGEA3	23	151935329	Nonsense_Mutation	SNP	C	TCGA-73-4658-01A-01D-1753-08	4872271	151935329	3335231	609	160121											
GDI1	2664	broad.mit.edu	37	chrX	153668831	153668831	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acccgctctacggcttgggcGagctgccccagggttttgca	13	14	1	0			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153668831	C	C	153668831	3	2	203	1	0	0	0	0	1	0	0	0	6384	1059	37	4	719	4	GDI1	23	153668831	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	1733502	153668831	1601729	610	160122											
PLXNA3	55558	broad.mit.edu	37	chrX	153689814	153689814	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttcaccatcttctctcagGgccagaagaaccgggccagc	9	15	5	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153689814	C	C	153689814	3	2	203	1	0	0	0	0	1	0	0	0	12216	1232	43	4	976	4	PLXNA3	23	153689814	Missense_Mutation	SNP	G	TCGA-73-4658-01A-01D-1753-08	20983	153689814	1580746	611	160123											
CLIC2	1193	broad.mit.edu	37	chrX	154520566	154520566	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatccaatcataagttgcCcattttcaatagatattttc	4	8	2	2			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154520566	T	T	154520566	1	4	203	0	1	0	0	0	0	0	0	0	3558	638	22	4		4	CLIC2	23	154520566	Intron	SNP	C	TCGA-73-4658-01A-01D-1753-08	830752	154520566	749994	612	160124											
DNAJC11	55735	broad.mit.edu	37	chr1	6697168	6697168	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatccgcccaccttggccttCcaaagtgctaggattatagg	9	12	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6697168	T	T	6697168	1	4	204	0	1	0	0	0	0	0	0	0	4670	870	30	4		4	DNAJC11	1	6697168	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08		6697168	242553453	1	160125											
ACTL8	81569	broad.mit.edu	37	chr1	18153051	18153051	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagaatgggctcctgttaGatgggcacgggcggattaat	15	7	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18153051	T	T	18153051	1	4	204	0	1	0	0	0	0	0	0	0	202	957	33	3		3	ACTL8	1	18153051	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	11455883	18153051	231097570	2	160126											
HSPG2	3339	broad.mit.edu	37	chr1	22198929	22198929	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggggtgccttggtgggggaTggggcacgggagggtgttaa	23	5	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22198929	G	G	22198929	1	3	204	0	1	0	0	0	0	0	0	0	7500	1479	51	5		5	HSPG2	1	22198929	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	4045878	22198929	227051692	3	160127											
LUZP1	7798	broad.mit.edu	37	chr1	23417946	23417946	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttttacctattcgagttgGggggtcttctaaagatttca	10	6	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23417946	C	C	23417946	3	2	204	1	0	0	0	0	1	0	0	0	9173	1232	43	4	429	4	LUZP1	1	23417946	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1219017	23417946	225832675	4	160128											
HNRNPR	10236	broad.mit.edu	37	chr1	23667394	23667394	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccaccttctgtgggaggccTgcctctatcagtgtcttgta	11	12	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23667394	A	A	23667394	2	1	204	1	0	0	0	0	0	0	0	1	7339	1567	55	5		5	HNRNPR	1	23667394	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	249448	23667394	225583227	5	160129											
C1orf63	57035	broad.mit.edu	37	chr1	25573174	25573174	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaacccgtagcgcctctctCggtaacggcggctgcgggat	14	13	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25573174	A	A	25573174	3	1	204	1	0	0	0	0	1	0	0	0	2075	884	31	3	607	3	C1orf63	1	25573174	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1905780	25573174	223677447	6	160130											
GPN2	54707	broad.mit.edu	37	chr1	27212601	27212601	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtaggagaggtccagaacctCtgtgtagtagtccaggttga	14	7	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27212601	A	A	27212601	4	1	204	1	0	0	0	0	0	1	0	0	6683	922	32	3	352	3	GPN2	1	27212601	Nonsense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1639427	27212601	222038020	7	160131											
CYP4B1	1580	broad.mit.edu	37	chr1	47284377	47284378	+	Frame_Shift_Del	DEL	TC	-	-													gtgcttgctccgctttgagtTctctctggacccctcacggc							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47284378	-	-	47284377	7	5	204	1	0	1	0	1	0	0	0	0	4218	1783	62	0	1476	0	CYP4B1	1	47284377	Frame_Shift_Del	DEL	TC	TCGA-73-4659-01A-01D-1265-08	20071776	47284377	201966244	8	160132											
MRPL37	51253	broad.mit.edu	37	chr1	54665932	54665932	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcggtatggcattggcgtccGggcccgcaaggcgggcgcta	17	12	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54665932	C	C	54665932	3	2	204	1	0	0	0	0	1	0	0	0	9894	1116	39	4	18	4	MRPL37	1	54665932	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	7381555	54665932	194584689	9	160133											
DNAJB4	11080	broad.mit.edu	37	chr1	78479142	78479142	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaccattgagattaaaaaaGggtggaaagaaggcaccaaa	10	5	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78479142	C	C	78479142	3	2	204	1	0	0	0	0	1	0	0	0	4662	1000	35	4	625	4	DNAJB4	1	78479142	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	23813210	78479142	170771479	10	160134											
COL24A1	255631	broad.mit.edu	37	chr1	86308181	86308181	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttacctttagatttttcatGgttgaaatttacctagtttg	7	5	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86308181	A	A	86308181	1	1	204	0	1	0	0	0	0	0	0	0	3715	1363	47	4		4	COL24A1	1	86308181	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	7829039	86308181	162942440	11	160135											
TGFBR3	7049	broad.mit.edu	37	chr1	92327099	92327099	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaagtcatttttatttctCcaacagtgcgtctcgtccag	9	10	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92327099	A	A	92327099	1	1	204	0	1	0	0	0	0	0	0	0	15946	870	30	3		3	TGFBR3	1	92327099	5'UTR	SNP	C	TCGA-73-4659-01A-01D-1265-08	6018918	92327099	156923522	12	160136											
COL11A1	1301	broad.mit.edu	37	chr1	103435776	103435776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtaacaaggtcacttacaGtctccccacgttgcccaggg	10	13	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103435776	T	T	103435776	3	4	204	1	0	0	0	0	1	0	0	0	3699	1043	36	3	2683	3	COL11A1	1	103435776	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	11108677	103435776	145814845	13	160137											
SLC6A17	388662	broad.mit.edu	37	chr1	110709884	110709884	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcccctgcaaataggccGgggatgaggggtaaaaaaga	16	7	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110709884	T	T	110709884	1	4	204	0	1	0	0	0	0	0	0	0	14794	1131	39	1		1	SLC6A17	1	110709884	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	7274108	110709884	138540737	14	160138											
SLC6A17	388662	broad.mit.edu	37	chr1	110716544	110716544	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggtggagcgtgggggcAgggtggagttgcctgcagcc	21	9	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110716544	T	T	110716544	1	4	204	0	1	0	0	0	0	0	0	0	14794	203	7	5		5	SLC6A17	1	110716544	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	6660	110716544	138534077	15	160139											
ATP1A1	476	broad.mit.edu	37	chr1	116939183	116939183	+	Intron	DEL	G	-	-													gactttaaggtcatttacttGgcagttgcattcaacacatt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116939183	-	-	116939183	6	5	204	0	1	1	0	1	0	0	0	0	1132	1363	47	0		0	ATP1A1	1	116939183	Intron	DEL	G	TCGA-73-4659-01A-01D-1265-08	6222639	116939183	132311438	16	160140											
TTF2	8458	broad.mit.edu	37	chr1	117632685	117632685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacaaaaaaggtttctccGttgctctccatttgatgagt	7	9	3	2	rs145353452		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117632685	T	T	117632685	3	4	204	1	0	0	0	0	1	0	0	0	16845	1145	40	3	2405	3	TTF2	1	117632685	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	693502	117632685	131617936	17	160141											
PIAS3	10401	broad.mit.edu	37	chr1	145580564	145580564	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggaacccttctacaaaaActcagagcaaagggtatccg	9	11	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145580564	G	G	145580564	2	3	204	1	0	0	0	0	0	0	0	1	11972	40	2	5		5	PIAS3	1	145580564	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	27947879	145580564	103670057	18	160142											
SV2A	9900	broad.mit.edu	37	chr1	149882197	149882197	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acagaaggaaaggcgcagacGaggacgaagaccctccagct	13	11	0	3	rs148163632	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149882197	A	A	149882197	2	1	204	1	0	0	0	0	0	0	0	1	15535	1045	37	4		4	SV2A	1	149882197	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	4301633	149882197	99368424	19	160143											
POGZ	23126	broad.mit.edu	37	chr1	151400575	151400575	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accatcccaacctggctctgCcatctcctcttccgaagcct	5	19	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151400575	G	G	151400575	1	3	204	0	1	0	0	0	0	0	0	0	12281	754	26	4		4	POGZ	1	151400575	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1518378	151400575	97850046	20	160144											
CGN	57530	broad.mit.edu	37	chr1	151508772	151508772	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcggaaagttaaagaactatCcatccagattgaagacgagc	10	8	0	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151508772	T	T	151508772	3	4	204	1	0	0	0	0	1	0	0	0	3333	855	30	4	3327	4	CGN	1	151508772	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	108197	151508772	97741849	21	160145											
HRNR	388697	broad.mit.edu	37	chr1	152188193	152188193	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacggctggaagaccaccctGagccagacccatatgggccg	12	15	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152188193	C	C	152188193	4	2	204	1	0	0	0	0	0	1	0	0	7426	1294	45	4	2644	4	HRNR	1	152188193	Nonsense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	679421	152188193	97062428	22	160146											
FLG	2312	broad.mit.edu	37	chr1	152280088	152280088	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggtccgtccatgggcggacTcagactgttcatgagtgctc	13	12	2	2	rs148955202		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152280088	A	A	152280088	3	1	204	1	0	0	0	0	1	0	0	0	5979	1551	54	5	4915	5	FLG	1	152280088	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	91895	152280088	96970533	23	160147											
KPRP	448834	broad.mit.edu	37	chr1	152733815	152733815	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatttttaaaggaaaggtgActgagataaccctctctcct	7	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152733815	G	G	152733815	1	3	204	0	1	0	0	0	0	0	0	0	8507	290	10	5		5	KPRP	1	152733815	3'UTR	SNP	A	TCGA-73-4659-01A-01D-1265-08	453727	152733815	96516806	24	160148											
UBAP2L	9898	broad.mit.edu	37	chr1	154241426	154241426	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcacctgcagcaggatgGccaggtaatagcccttcccc	9	16	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154241426	T	T	154241426	3	4	204	1	0	0	0	0	1	0	0	0	16964	1203	42	3	3316	3	UBAP2L	1	154241426	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1507611	154241426	95009195	25	160149											
BCAN	63827	broad.mit.edu	37	chr1	156617830	156617830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacatggatggcttccccGgggtccggaactatggtgtg	16	9	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156617830	T	T	156617830	3	4	204	1	0	0	0	0	1	0	0	0	1350	1116	39	1	711	1	BCAN	1	156617830	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	2376404	156617830	92632791	26	160150											
NTRK1	4914	broad.mit.edu	37	chr1	156837895	156837896	+	Splice_Site	DNP	GG	TT	TT													ggtgtcccccatgccccccaGggtcctgtcggggaaccctc							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	156837896	TT	TT	156837895	5	4	204	1	0	0	0	0	0	0	1	0	10801	1014	35	2	576	2	NTRK1	1	156837895	Splice_Site	DNP	GG	TCGA-73-4659-01A-01D-1265-08	220065	156837895	92412726	27	160151											
FCRL2	79368	broad.mit.edu	37	chr1	157718300	157718300	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaacaatgcatcactttcCtgtgaatatgcatctgacaa	6	10	2	2	rs35515182		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157718300	T	T	157718300	1	4	204	0	1	0	0	0	0	0	0	0	5852	696	24	4		4	FCRL2	1	157718300	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	880405	157718300	91532321	28	160152											
CD1E	913	broad.mit.edu	37	chr1	158326823	158326823	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaggaatactttttcccCatcttccagagatttttttt	4	9	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158326823	A	A	158326823	1	1	204	0	1	0	0	0	0	0	0	0	3008	609	21	2		2	CD1E	1	158326823	3'UTR	SNP	C	TCGA-73-4659-01A-01D-1265-08	608523	158326823	90923798	29	160153											
CADM3	57863	broad.mit.edu	37	chr1	159162262	159162262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcagttattttttccccaCccaccatactagaccccttc	4	16	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159162262	A	A	159162262	1	1	204	0	1	0	0	0	0	0	0	0	2594	522	18	3		3	CADM3	1	159162262	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	835439	159162262	90088359	30	160154											
VANGL2	57216	broad.mit.edu	37	chr1	160393794	160393794	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggggagaggggtggggtGggggaaagagaggtgggcat	25	2	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160393794	T	T	160393794	1	4	204	0	1	0	0	0	0	0	0	0	17247	1363	47	2		2	VANGL2	1	160393794	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1231532	160393794	88856827	31	160155											
SLAMF6	114836	broad.mit.edu	37	chr1	160465763	160465763	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatattctttaccactagGcgacagtgcacatttgaagt	8	10	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160465763	A	A	160465763	1	1	204	0	1	0	0	0	0	0	0	0	14481	1218	42	4		4	SLAMF6	1	160465763	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	71969	160465763	88784858	32	160156											
LY9	4063	broad.mit.edu	37	chr1	160771713	160771713	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgcgggagggctaggccctCgcccccacctgccactggag	15	16	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160771713	G	G	160771713	1	3	204	0	1	0	0	0	0	0	0	0	9189	899	31	4		4	LY9	1	160771713	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	305950	160771713	88478908	33	160157											
ITLN1	55600	broad.mit.edu	37	chr1	160851995	160851995	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcggagaaaatacaggccatCtgtagagagaaccagcccag	12	10	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160851995	A	A	160851995	5	1	204	1	0	0	0	0	0	0	1	0	7980	927	32	3	804	3	ITLN1	1	160851995	Splice_Site	SNP	C	TCGA-73-4659-01A-01D-1265-08	80282	160851995	88398626	34	160158											
FCGR2C	9103	broad.mit.edu	37	chr1	161569700	161569700	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagactggaaaaattcctgaGcaaacaaaaccacctggccc	8	12	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161569700	T	T	161569700	1	4	204	0	1	0	0	0	0	0	0	0	5840	986	34	3		3	FCGR2C	1	161569700	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	717705	161569700	87680921	35	160159											
TMCO1	54499	broad.mit.edu	37	chr1	165697224	165697224	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagtctgatgtgtgtgtgtCtagaaagaatgatagaaaat	11	4	2	5			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165697224	A	A	165697224	1	1	204	0	1	0	0	0	0	0	0	0	16118	928	32	3		3	TMCO1	1	165697224	3'UTR	SNP	C	TCGA-73-4659-01A-01D-1265-08	4127524	165697224	83553397	36	160160											
F5	2153	broad.mit.edu	37	chr1	169511405	169511405	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacgtgaggcattctgggGgctgatcagccaattgttaa	13	8	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169511405	T	T	169511405	3	4	204	1	0	0	0	0	1	0	0	0	5391	1232	43	2	3803	2	F5	1	169511405	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3814181	169511405	79739216	37	160161											
TNR	7143	broad.mit.edu	37	chr1	175304875	175304875	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aactcatcctccacgttcccGaagccaacacggtaatcagc	6	16	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175304875	A	A	175304875	2	1	204	1	0	0	0	0	0	0	0	1	16461	1049	37	4		4	TNR	1	175304875	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	5793470	175304875	73945746	38	160162											
RFWD2	64326	broad.mit.edu	37	chr1	176012830	176012830	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgattcatataacatgtaacTagtacccttatttacctgat	4	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176012830	A	A	176012830	1	1	204	0	1	0	0	0	0	0	0	0	13368	1537	53	5		5	RFWD2	1	176012830	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	707955	176012830	73237791	39	160163											
ASTN1	460	broad.mit.edu	37	chr1	176984102	176984102	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaacatgaaatagtcaggGtaaactcttactctgatatt	6	6	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176984102	A	A	176984102	1	1	204	0	1	0	0	0	0	0	0	0	1068	1276	44	4		4	ASTN1	1	176984102	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	971272	176984102	72266519	40	160164											
ASTN1	460	broad.mit.edu	37	chr1	177030287	177030287	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttcttcagtggggtcttgtCcaggaaggcttggggcacca	15	9	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177030287	T	T	177030287	3	4	204	1	0	0	0	0	1	0	0	0	1068	855	30	4	3578	4	ASTN1	1	177030287	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	46185	177030287	72220334	41	160165											
ZNF648	127665	broad.mit.edu	37	chr1	182026435	182026435	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccgccctcgcgccggccCgcctggttctgtactttcct	9	19	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	182026435	G	G	182026435	2	3	204	1	0	0	0	0	0	0	0	1	18190	639	23	4		4	ZNF648	1	182026435	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	4996148	182026435	67224186	42	160166											
RNASEL	6041	broad.mit.edu	37	chr1	182550164	182550164	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgaatgggagagagggaGggccagcttctgaaagtaga	17	5	2	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182550164	T	T	182550164	1	4	204	0	1	0	0	0	0	0	0	0	13527	1015	35	2		2	RNASEL	1	182550164	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	523729	182550164	66700457	43	160167											
LAMC1	3915	broad.mit.edu	37	chr1	183091040	183091040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtccatgtgtgctttgcGcctgcaatggacacagcgag	12	11	0	0	rs147401305	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183091040	T	T	183091040	3	4	204	1	0	0	0	0	1	0	0	0	8686	1087	38	3	2219	3	LAMC1	1	183091040	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	540876	183091040	66159581	44	160168											
C1orf26	54823	broad.mit.edu	37	chr1	185143447	185143447	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttattctaactaaaatgatAgagtgcaacattatgtataa	6	4	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185143447	G	G	185143447	1	3	204	0	1	0	0	0	0	0	0	0	2057	435	15	5		5	C1orf26	1	185143447	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	2052407	185143447	64107174	45	160169											
F13B	2165	broad.mit.edu	37	chr1	197019870	197019870	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacattccatctaaacaataGgcctccctagatccttctag	4	14	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197019870	A	A	197019870	2	1	204	1	0	0	0	0	0	0	0	1	5384	987	35	4		4	F13B	1	197019870	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	11876423	197019870	52230751	46	160170											
CACNA1S	779	broad.mit.edu	37	chr1	201030557	201030557	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggttgttgtagatgggaccCacgtcctccgcattggagtc	13	11	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201030557	T	T	201030557	2	4	204	1	0	0	0	0	0	0	0	1	2573	581	21	4		4	CACNA1S	1	201030557	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	4010687	201030557	48220064	47	160171											
CACNA1S	779	broad.mit.edu	37	chr1	201035434	201035434	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggatcttcaccacggagaTggcactggacctggggggcg	16	11	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201035434	A	A	201035434	3	1	204	1	0	0	0	0	1	0	0	0	2573	1464	51	5	3049	5	CACNA1S	1	201035434	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	4877	201035434	48215187	48	160172											
ELF3	1999	broad.mit.edu	37	chr1	201980419	201980419	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacccccagatgtcattggAgggtacaggtgggtctcagc	13	11	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201980419	G	G	201980419	3	3	204	1	0	0	0	0	1	0	0	0	5097	304	11	5	157	5	ELF3	1	201980419	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	944985	201980419	47270202	49	160173											
SLC26A9	115019	broad.mit.edu	37	chr1	205904837	205904837	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagttacctgaaggcattgcGaagtttctctcccactgggt	10	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205904837	A	A	205904837	3	1	204	1	0	0	0	0	1	0	0	0	14638	1058	37	4	2639	4	SLC26A9	1	205904837	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3924418	205904837	43345784	50	160174											
CENPF	1063	broad.mit.edu	37	chr1	214820057	214820057	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgacccaaagtctgagaGgtctggaattagatgttgtt	13	5	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214820057	A	A	214820057	3	1	204	1	0	0	0	0	1	0	0	0	3261	1000	35	4	7190	4	CENPF	1	214820057	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	8915220	214820057	34430564	51	160175											
MARK1	4139	broad.mit.edu	37	chr1	220800295	220800295	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtgctggacatatgagacAggtgtggccctggatacaga	14	7	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220800295	T	T	220800295	1	4	204	0	1	0	0	0	0	0	0	0	9404	203	7	5		5	MARK1	1	220800295	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	5980238	220800295	28450326	52	160176											
CAPN2	824	broad.mit.edu	37	chr1	223939524	223939524	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtatagtgttctatactcTttaaagtgctgtaagagtat	8	5	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	223939524	C	C	223939524	1	2	204	0	1	0	0	0	0	0	0	0	2653	1624	56	5		5	CAPN2	1	223939524	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3139229	223939524	25311097	53	160177											
CNIH3	149111	broad.mit.edu	37	chr1	224927039	224927039	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcattcagcatgatctAcactttagtgagctcttaac	6	9	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	224927039	T	T	224927039	3	4	204	1	0	0	0	0	1	0	0	0	3636	391	14	5	486	5	CNIH3	1	224927039	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	987515	224927039	24323582	54	160178											
NUP133	55746	broad.mit.edu	37	chr1	229636555	229636555	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaagaaagagccactaagTcggcactccagtggaaatca	10	9	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229636555	C	C	229636555	3	2	204	1	0	0	0	0	1	0	0	0	10849	1667	58	5	3101	5	NUP133	1	229636555	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	4709516	229636555	19614066	55	160179											
COG2	22796	broad.mit.edu	37	chr1	230804530	230804530	+	Frame_Shift_Del	DEL	G	-	-													cttttggacaaagtaagaccGgtaagtgttgttttggattt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	230804530	-	-	230804530	7	5	204	1	0	1	0	1	0	0	0	0	3690	1130	39	0	616	0	COG2	1	230804530	Frame_Shift_Del	DEL	G	TCGA-73-4659-01A-01D-1265-08	1167975	230804530	18446091	56	160180											
RYR2	6262	broad.mit.edu	37	chr1	237813455	237813456	+	Intron	DNP	TG	GT	GT													aaaaaacagaatttacaatgTggcctttgacaaattattta							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	237813456	GT	GT	237813455	1	3	204	0	1	0	0	0	0	0	0	0	13880	1711	59	5		5	RYR2	1	237813455	Intron	DNP	TG	TCGA-73-4659-01A-01D-1265-08	7008925	237813455	11437166	57	160181											
EXO1	9156	broad.mit.edu	37	chr1	242042436	242042436	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagcattgcagcagttcCgaagaaagagcgattccccc	10	13	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242042436	A	A	242042436	2	1	204	1	0	0	0	0	0	0	0	1	5342	644	23	1		1	EXO1	1	242042436	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	4228981	242042436	7208185	58	160182											
AHCTF1	25909	broad.mit.edu	37	chr1	247063588	247063588	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attactaagtcattggtcagCtacacatacaaatacaaaga	5	8	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247063588	A	A	247063588	1	1	204	0	1	0	0	0	0	0	0	0	408	812	28	3		3	AHCTF1	1	247063588	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	5021152	247063588	2187033	59	160183											
OR6F1	343169	broad.mit.edu	37	chr1	247876019	247876019	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaccaggaaagcccagtaaGagaaagtcctggggcagagt	14	8	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247876019	T	T	247876019	2	4	204	1	0	0	0	0	0	0	0	1	11295	929	33	3		3	OR6F1	1	247876019	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	812431	247876019	1374602	60	160184											
OR2L13	284521	broad.mit.edu	37	chr1	248167182	248167182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgtagtaactttctaCtatacaccttttgtctacac	3	12	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248167182	A	A	248167182	1	1	204	0	1	0	0	0	0	0	0	0	11100	580	20	3		3	OR2L13	1	248167182	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	291163	248167182	1083439	61	160185											
OR2M3	127062	broad.mit.edu	37	chr1	248366604	248366604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcatctgcaccaccgtaCccaagatggccttcaactac	6	16	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248366604	A	A	248366604	3	1	204	1	0	0	0	0	1	0	0	0	11105	507	18	3	237	3	OR2M3	1	248366604	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	199422	248366604	884017	62	160186											
OR2T33	391195	broad.mit.edu	37	chr1	248436623	248436623	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgtgtgcaccacaatatGggaagctcagggtaacaaca	10	10	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248436623	T	T	248436623	3	4	204	1	0	0	0	0	1	0	0	0	11118	1348	47	2	471	2	OR2T33	1	248436623	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	70019	248436623	813998	63	160187											
OR2T12	127064	broad.mit.edu	37	chr1	248458171	248458171	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacatgtgaagagcaggtgGcaaaggccttcttgcgggct	14	10	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248458171	T	T	248458171	3	4	204	1	0	0	0	0	1	0	0	0	11113	1203	42	3	255	3	OR2T12	1	248458171	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	21548	248458171	792450	64	160188											
OR2T4	127074	broad.mit.edu	37	chr1	248525194	248525194	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctctcatggacatggcGtacatttctgtcactgtgcc	9	11	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248525194	A	A	248525194	2	1	204	1	0	0	0	0	0	0	0	1	11121	1132	40	4		4	OR2T4	1	248525194	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	67023	248525194	725427	65	160189											
OR14I1	401994	broad.mit.edu	37	chr1	248844837	248844837	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcaattggtcctaaggCagcaaagagccctgtggtaa	11	8	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248844837	A	A	248844837	3	1	204	1	0	0	0	0	1	0	0	0	11041	710	25	3	170	3	OR14I1	1	248844837	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	319643	248844837	405784	66	160190											
COLEC11	78989	broad.mit.edu	37	chr2	3685151	3685151	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggacaaaggacagaaaggCagtgtgggtcgtcatggaaa	17	5	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3685151	A	A	3685151	2	1	204	1	0	0	0	0	0	0	0	1	3743	697	25	3		3	COLEC11	2	3685151	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08		3685151	239514222	67	160191											
SMC6	79677	broad.mit.edu	37	chr2	17896178	17896178	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactcagaaactattatcggTggccgtgaggtccctggtaa	11	9	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17896178	A	A	17896178	2	1	204	1	0	0	0	0	0	0	0	1	14901	1683	59	5		5	SMC6	2	17896178	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	14211027	17896178	225303195	68	160192											
HADHA	3030	broad.mit.edu	37	chr2	26415302	26415302	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatttacgacctaaaacaGgcaagaaaagggagtgttac	10	7	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26415302	A	A	26415302	1	1	204	0	1	0	0	0	0	0	0	0	7009	1015	35	4		4	HADHA	2	26415302	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	8519124	26415302	216784071	69	160193											
PLB1	151056	broad.mit.edu	37	chr2	28761222	28761222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcgtggatgagctgatgGgggtgctggactacctgcag	19	8	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28761222	T	T	28761222	3	4	204	1	0	0	0	0	1	0	0	0	12119	1232	43	2	663	2	PLB1	2	28761222	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	2345920	28761222	214438151	70	160194											
FSHR	2492	broad.mit.edu	37	chr2	49210182	49210182	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagccacataaatattgctGttgtaagagccatttccctt	6	9	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49210182	C	C	49210182	1	2	204	0	1	0	0	0	0	0	0	0	6133	1392	48	4		4	FSHR	2	49210182	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	20448960	49210182	193989191	71	160195											
NRXN1	9378	broad.mit.edu	37	chr2	50149296	50149296	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagggcggcagcggctactAtcccaacgaccatacccgtg	11	15	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50149296	G	G	50149296	3	3	204	1	0	0	0	0	1	0	0	0	10760	449	16	5	217	5	NRXN1	2	50149296	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	939114	50149296	193050077	72	160196											
DYSF	8291	broad.mit.edu	37	chr2	71730487	71730487	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgccaggttaaggtccaaGgcattgccaggtggcttcct	12	11	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71730487	C	C	71730487	1	2	204	0	1	0	0	0	0	0	0	0	4899	1015	35	4		4	DYSF	2	71730487	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	21581191	71730487	171468886	73	160197											
CCDC142	84865	broad.mit.edu	37	chr2	74709988	74709988	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgggtccagaacgaacCtaacgattcccacttccctg	10	15	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74709988	A	A	74709988	1	1	204	1	0	0	0	0	0	0	0	0	2802	696	24	2		2	CCDC142	2	74709988	Translation_Start_Site	SNP	C	TCGA-73-4659-01A-01D-1265-08	2979501	74709988	168489385	74	160198											
REG3A	5068	broad.mit.edu	37	chr2	79384741	79384741	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtggccggggcttgagatGgtggagggatttctctccca	16	9	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79384741	C	C	79384741	2	2	204	1	0	0	0	0	0	0	0	1	13320	1335	47	4		4	REG3A	2	79384741	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	4674753	79384741	163814632	75	160199											
FAHD2A	51011	broad.mit.edu	37	chr2	96078209	96078209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caacttaaagatctgctgccGagtgaatggggaagtggtcc	13	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96078209	T	T	96078209	3	4	204	1	0	0	0	0	1	0	0	0	5419	1058	37	3	731	3	FAHD2A	2	96078209	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	16693468	96078209	147121164	76	160200											
VWA3B	200403	broad.mit.edu	37	chr2	98852817	98852817	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttatgtaaaacccatatgtGaggaaaatatacaactgcca	6	7	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98852817	T	T	98852817	1	4	204	0	1	0	0	0	0	0	0	0	17368	1305	45	3		3	VWA3B	2	98852817	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	2774608	98852817	144346556	77	160201											
TXNDC9	10190	broad.mit.edu	37	chr2	99949717	99949717	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggtgctggggagaagAtttacaaaatacattttaaa	11	5	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99949717	T	T	99949717	1	4	204	0	1	0	0	0	0	0	0	0	16928	348	12	5		5	TXNDC9	2	99949717	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	1096900	99949717	143249656	78	160202											
GCC2	9648	broad.mit.edu	37	chr2	109086113	109086113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttttgtaataggattctGtaacaaagatgggagatgca	10	3	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109086113	T	T	109086113	3	4	204	1	0	0	0	0	1	0	0	0	6348	1377	48	3	350	3	GCC2	2	109086113	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	9136396	109086113	134113260	79	160203											
IL1F9	56300	broad.mit.edu	37	chr2	113742389	113742389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacagcttctgtttctcCtaatgggtacttgttctgac	7	10	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113742389	A	A	113742389	1	1	204	0	1	0	0	0	0	0	0	0	7727	696	24	2		2	IL1F9	2	113742389	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	4656276	113742389	129456984	80	160204											
IWS1	55677	broad.mit.edu	37	chr2	128260954	128260954	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaactcatgttatactGtcacttactcttcttcattg	4	10	5	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128260954	A	A	128260954	1	1	204	0	1	0	0	0	0	0	0	0	8001	1392	48	4		4	IWS1	2	128260954	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	14518565	128260954	114938419	81	160205											
TUBA3D	113457	broad.mit.edu	37	chr2	132237849	132237849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaccacccacacgaccCtggaacattctgactgtgcc	7	17	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132237849	A	A	132237849	3	1	204	1	0	0	0	0	1	0	0	0	16873	680	24	2	597	2	TUBA3D	2	132237849	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	3976895	132237849	110961524	82	160206											
NCKAP5	344148	broad.mit.edu	37	chr2	133541998	133541998	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgtcagattttgcttttGatagatgcccatgggtgccg	11	7	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133541998	C	C	133541998	3	2	204	1	0	0	0	0	1	0	0	0	10318	1299	45	4	3371	4	NCKAP5	2	133541998	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1304149	133541998	109657375	83	160207											
THSD7B	80731	broad.mit.edu	37	chr2	138163266	138163266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcatgcctctccttgtgCaagaatgcacagtcccatgt	9	13	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138163266	A	A	138163266	3	1	204	1	0	0	0	0	1	0	0	0	16003	711	25	3	2537	3	THSD7B	2	138163266	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	4621268	138163266	105036107	84	160208											
THSD7B	80731	broad.mit.edu	37	chr2	138330047	138330047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccaggatgaaattccccCagaaacccagtcctgttctc	6	15	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138330047	A	A	138330047	3	1	204	1	0	0	0	0	1	0	0	0	16003	594	21	2	3318	2	THSD7B	2	138330047	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	166781	138330047	104869326	85	160209											
SPOPL	339745	broad.mit.edu	37	chr2	139322555	139322555	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtaaagatgggaaaaactgGaacagcaagtaagatgacat	11	4	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139322555	T	T	139322555	3	4	204	1	0	0	0	0	1	0	0	0	15203	1183	41	3	1060	3	SPOPL	2	139322555	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	992508	139322555	103876818	86	160210											
NEB	4703	broad.mit.edu	37	chr2	152500964	152500964	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaatcaaatcaatatcaaCagaggataaaatcttacttc	4	8	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152500964	A	A	152500964	1	1	204	0	1	0	0	0	0	0	0	0	10397	493	17	3		3	NEB	2	152500964	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	13178409	152500964	90698409	87	160211											
CYTIP	9595	broad.mit.edu	37	chr2	158272582	158272582	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacaagggctgggcctggCccaggcaggggtccaaacaa	14	13	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158272582	A	A	158272582	2	1	204	1	0	0	0	0	0	0	0	1	4240	726	26	3		3	CYTIP	2	158272582	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	5771618	158272582	84926791	88	160212											
DPP4	1803	broad.mit.edu	37	chr2	162902123	162902123	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagaatgtccaaactcatcCtgtcaaacaagaagaacaaa	5	9	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162902123	T	T	162902123	5	4	204	1	0	0	0	0	0	0	1	0	4769	695	24	4	2103	4	DPP4	2	162902123	Splice_Site	SNP	C	TCGA-73-4659-01A-01D-1265-08	4629541	162902123	80297250	89	160213											
XIRP2	129446	broad.mit.edu	37	chr2	168100444	168100444	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgttggatgtttgaaaccCagccattagacattctaaaa	8	7	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168100444	A	A	168100444	3	1	204	1	0	0	0	0	1	0	0	0	17557	595	21	2	2572	2	XIRP2	2	168100444	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	5198321	168100444	75098929	90	160214											
MYO3B	140469	broad.mit.edu	37	chr2	171258249	171258249	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggagagctgtcattgaccCcgccgtctcttagagtttgc	11	12	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171258249	A	A	171258249	1	1	204	0	1	0	0	0	0	0	0	0	10171	638	22	2		2	MYO3B	2	171258249	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	3157805	171258249	71941124	91	160215											
COL3A1	1281	broad.mit.edu	37	chr2	189862040	189862040	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatctgtattatttctacttCcctaactgttcttgttttta	3	8	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189862040	T	T	189862040	1	4	204	0	1	0	0	0	0	0	0	0	3720	870	30	4		4	COL3A1	2	189862040	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	18603791	189862040	53337333	92	160216											
WDR12	55759	broad.mit.edu	37	chr2	203764280	203764280	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgcccctttaattgaactGatccagtcatcatggaacat	6	11	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203764280	A	A	203764280	2	1	204	1	0	0	0	0	0	0	0	1	17401	1280	45	4		4	WDR12	2	203764280	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	13902240	203764280	39435093	93	160217											
PTH2R	5746	broad.mit.edu	37	chr2	209302230	209302230	+	Intron	DEL	G	-	-													ttctaactacatttttctttGtttatttgctttaatttttt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	209302230	-	-	209302230	6	5	204	0	1	1	0	1	0	0	0	0	12866	1392	48	0		0	PTH2R	2	209302230	Intron	DEL	G	TCGA-73-4659-01A-01D-1265-08	5537950	209302230	33897143	94	160218											
SLC4A3	6508	broad.mit.edu	37	chr2	220494287	220494287	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggcaaggccccagggcacAttctatgtctgcagttctcc	12	13	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220494287	T	T	220494287	1	4	204	0	1	0	0	0	0	0	0	0	14769	232	8	5		5	SLC4A3	2	220494287	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	11192057	220494287	22705086	95	160219											
AGFG1	3267	broad.mit.edu	37	chr2	228389458	228389458	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgactggaatatctttatAgttaatatgtggtttgtagt	9	4	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228389458	T	T	228389458	1	4	204	0	1	0	0	0	0	0	0	0	380	435	15	5		5	AGFG1	2	228389458	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	7895171	228389458	14809915	96	160220											
SLC19A3	80704	broad.mit.edu	37	chr2	228564115	228564115	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaactctacaacctgcaTggtcttcactccttggccaa	7	13	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228564115	C	C	228564115	3	2	204	1	0	0	0	0	1	0	0	0	14543	1464	51	5	1190	5	SLC19A3	2	228564115	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	174657	228564115	14635258	97	160221											
SPHKAP	80309	broad.mit.edu	37	chr2	228882302	228882302	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataggccctggcctcggagtCttcctcaggaatgctttcgc	11	13	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228882302	A	A	228882302	3	1	204	1	0	0	0	0	1	0	0	0	15166	913	32	3	1858	3	SPHKAP	2	228882302	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	318187	228882302	14317071	98	160222											
CNTN4	152330	broad.mit.edu	37	chr3	3078942	3078942	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgaatatgaattccgcacAgttgcagccaacgtgattgg	11	8	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3078942	T	T	3078942	2	4	204	1	0	0	0	0	0	0	0	1	3675	175	7	5		5	CNTN4	3	3078942	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08		3078942	194943488	99	160223											
ATP2B2	491	broad.mit.edu	37	chr3	10452263	10452263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtggatgcggtggccaGgtgtgcggggcggttcgtgg	22	8	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10452263	T	T	10452263	1	4	204	0	1	0	0	0	0	0	0	0	1144	1015	35	2		2	ATP2B2	3	10452263	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	7373321	10452263	187570167	100	160224											
KLHL18	23276	broad.mit.edu	37	chr3	47374692	47374692	+	Frame_Shift_Del	DEL	A	-	-													tcagatacgaccgggagcagAggggtccctacctgcctgag							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47374692	-	-	47374692	7	5	204	1	0	1	0	1	0	0	0	0	8444	295	11	0	664	0	KLHL18	3	47374692	Frame_Shift_Del	DEL	A	TCGA-73-4659-01A-01D-1265-08	36922429	47374692	150647738	101	160225											
POU1F1	5449	broad.mit.edu	37	chr3	87309058	87309058	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaatcttatctgcactcaaGatgttccttagaaatagaaa	5	7	3	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87309058	T	T	87309058	3	4	204	1	0	0	0	0	1	0	0	0	12365	942	33	3	17	3	POU1F1	3	87309058	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	39934366	87309058	110713372	102	160226											
EPHA6	285220	broad.mit.edu	37	chr3	97454809	97454809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtacagacttccagctcCcatgggctgtccagcatctc	10	14	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97454809	T	T	97454809	3	4	204	1	0	0	0	0	1	0	0	0	5213	623	22	4	3154	4	EPHA6	3	97454809	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	10145751	97454809	100567621	103	160227											
TOMM70A	9868	broad.mit.edu	37	chr3	100091481	100091481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcatagccttcggcacacCttggaaatttctttatgacc	8	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100091481	A	A	100091481	3	1	204	1	0	0	0	0	1	0	0	0	16486	681	24	2	421	2	TOMM70A	3	100091481	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	2636672	100091481	97930949	104	160228											
C3orf15	89876	broad.mit.edu	37	chr3	119445030	119445030	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcaggtcggggtctccCagcaggacaagctgaggtgg	16	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119445030	T	T	119445030	3	4	204	1	0	0	0	0	1	0	0	0	2231	594	21	4	721	4	C3orf15	3	119445030	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	19353549	119445030	78577400	105	160229											
GOLGB1	2804	broad.mit.edu	37	chr3	121386567	121386567	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagaaaatccatagaagcTtgtctaaacacaatatttta	5	7	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121386567	C	C	121386567	1	2	204	0	1	0	0	0	0	0	0	0	6629	1624	56	5		5	GOLGB1	3	121386567	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	1941537	121386567	76635863	106	160230											
MUC13	56667	broad.mit.edu	37	chr3	124632262	124632262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatgggctagcaaaggtcCcagccatggtccatatgtct	11	11	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124632262	A	A	124632262	1	1	204	0	1	0	0	0	0	0	0	0	10065	638	22	2		2	MUC13	3	124632262	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	3245695	124632262	73390168	107	160231											
RAB43	339122	broad.mit.edu	37	chr3	128877272	128877272	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcagcctccccaagtattggGattacaggcatgagccactg	10	12	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128877272	A	A	128877272	1	1	204	0	1	0	0	0	0	0	0	0	13053	1189	41	4		4	RAB43	3	128877272	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	4245010	128877272	69145158	108	160232											
COPG	22820	broad.mit.edu	37	chr3	128971533	128971533	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccaagctctttcagtccaAtgatgtaagtgcctcaaccc	7	13	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128971533	G	G	128971533	3	3	204	1	0	0	0	0	1	0	0	0	3763	101	4	5	253	5	COPG	3	128971533	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	94261	128971533	69050897	109	160233											
PLXND1	23129	broad.mit.edu	37	chr3	129288825	129288825	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagaggttggggaagggggTtgtagctttcctggacttat	17	5	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129288825	C	C	129288825	1	2	204	0	1	0	0	0	0	0	0	0	12222	1740	60	5		5	PLXND1	3	129288825	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	317292	129288825	68733605	110	160234											
KY	339855	broad.mit.edu	37	chr3	134338158	134338158	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgagcctgggaggcgagaAgactccaccccaacccccag	11	16	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134338158	G	G	134338158	1	3	204	0	1	0	0	0	0	0	0	0	8658	87	3	5		5	KY	3	134338158	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	5049333	134338158	63684272	111	160235											
MED12L	116931	broad.mit.edu	37	chr3	151085496	151085496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctattctgatagcacgacaGtgtttttccctggaggacgt	11	9	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151085496	T	T	151085496	3	4	204	1	0	0	0	0	1	0	0	0	9522	1020	36	3	3371	3	MED12L	3	151085496	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	16747338	151085496	46936934	112	160236											
MME	4311	broad.mit.edu	37	chr3	154861211	154861211	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccttctggtcaaatgccaTttcctttttcttttccgtag	5	11	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154861211	A	A	154861211	1	1	204	0	1	0	0	0	0	0	0	0	9738	1508	52	5		5	MME	3	154861211	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3775715	154861211	43161219	113	160237											
MAP3K13	9175	broad.mit.edu	37	chr3	185191201	185191201	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagacagctgcccggctcGagccctgacctcatctccac	9	18	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185191201	T	T	185191201	2	4	204	1	0	0	0	0	0	0	0	1	9339	1045	37	3		3	MAP3K13	3	185191201	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	30329990	185191201	12831229	114	160238											
HES1	3280	broad.mit.edu	37	chr3	193855908	193855908	+	Frame_Shift_Del	DEL	T	-	-													gccttcgcgcacagcggcccTgtcatccccgtctacaccag							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	193855908	-	-	193855908	7	5	204	1	0	1	0	1	0	0	0	0	7132	1567	55	0	743	0	HES1	3	193855908	Frame_Shift_Del	DEL	T	TCGA-73-4659-01A-01D-1265-08	8664707	193855908	4166522	115	160239											
POLN	353497	broad.mit.edu	37	chr4	2200456	2200456	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgggggtctgtggaaacaCaacaaaataaattaaaccca	8	8	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2200456	A	A	2200456	1	1	204	0	1	0	0	0	0	0	0	0	12302	493	17	3		3	POLN	4	2200456	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08		2200456	188953820	116	160240											
SH3BP2	6452	broad.mit.edu	37	chr4	2834555	2834555	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagggctgccagtgtcgcCcccgctgtccttgtgcaggt	14	14	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2834555	T	T	2834555	1	4	204	0	1	0	0	0	0	0	0	0	14358	638	22	4		4	SH3BP2	4	2834555	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	634099	2834555	188319721	117	160241											
MAN2B2	23324	broad.mit.edu	37	chr4	6594859	6594859	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagccctggctgtccacAgagttcgtgtcttctgccct	11	13	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6594859	T	T	6594859	1	4	204	0	1	0	0	0	0	0	0	0	9309	203	7	5		5	MAN2B2	4	6594859	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	3760304	6594859	184559417	118	160242											
AFAP1	60312	broad.mit.edu	37	chr4	7873731	7873731	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatcactgcctttttctcCctgacagttgaggttagata	8	9	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7873731	A	A	7873731	3	1	204	1	0	0	0	0	1	0	0	0	353	622	22	2	2437	2	AFAP1	4	7873731	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1278872	7873731	183280545	119	160243											
PROM1	8842	broad.mit.edu	37	chr4	15993766	15993766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactttaaaatagtcttaCatcatgtgaatctcatctta	3	9	5	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15993766	A	A	15993766	1	1	204	0	1	0	0	0	0	0	0	0	12661	493	17	3		3	PROM1	4	15993766	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	8120035	15993766	175160510	120	160244											
GBA3	57733	broad.mit.edu	37	chr4	22737959	22737959	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtttttagagtgattatgGgataaattttttgaaatggg	11	0	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22737959	A	A	22737959	1	1	204	0	1	0	0	0	0	0	0	0	6330	1247	43	4		4	GBA3	4	22737959	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	6744193	22737959	168416317	121	160245											
PCDH7	5099	broad.mit.edu	37	chr4	30723875	30723875	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgactcctacgagctgacCctgcgagtgcgcgacggcgg	15	15	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30723875	A	A	30723875	2	1	204	1	0	0	0	0	0	0	0	1	11610	610	22	2		2	PCDH7	4	30723875	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	7985916	30723875	160430401	122	160246											
APBB2	323	broad.mit.edu	37	chr4	40829215	40829215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaggccagcgctttggCattcttccgttcagccataa	10	13	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40829215	A	A	40829215	3	1	204	1	0	0	0	0	1	0	0	0	763	710	25	3	633	3	APBB2	4	40829215	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	10105340	40829215	150325061	123	160247											
APBB2	323	broad.mit.edu	37	chr4	40946967	40946967	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgggatggagacgggcCgttcccactgagtcgttcct	14	12	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40946967	A	A	40946967	3	1	204	1	0	0	0	0	1	0	0	0	763	652	23	1	1368	1	APBB2	4	40946967	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	117752	40946967	150207309	124	160248											
GABRG1	2565	broad.mit.edu	37	chr4	46099327	46099327	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacccaggttttgttcacCgttaaatcctcatcatcttc	5	12	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46099327	A	A	46099327	2	1	204	1	0	0	0	0	0	0	0	1	6231	639	23	1		1	GABRG1	4	46099327	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	5152360	46099327	145054949	125	160249											
GABRB1	2560	broad.mit.edu	37	chr4	47428113	47428113	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggtccccaacagcgataCtgctgtttctcgaggtaaga	10	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47428113	T	T	47428113	1	4	204	0	1	0	0	0	0	0	0	0	6226	580	20	4		4	GABRB1	4	47428113	3'UTR	SNP	C	TCGA-73-4659-01A-01D-1265-08	1328786	47428113	143726163	126	160250											
LPHN3	23284	broad.mit.edu	37	chr4	62861995	62861995	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaataccttctctcccttGtgtttcattgcagatgttgg	8	9	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62861995	T	T	62861995	1	4	204	0	1	0	0	0	0	0	0	0	9004	1392	48	3		3	LPHN3	4	62861995	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	15433882	62861995	128292281	127	160251											
LPHN3	23284	broad.mit.edu	37	chr4	62903652	62903652	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttatgattggagctaatttCtagcctgtgtttaacacatc	7	8	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62903652	A	A	62903652	1	1	204	0	1	0	0	0	0	0	0	0	9004	928	32	3		3	LPHN3	4	62903652	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	41657	62903652	128250624	128	160252											
C4orf35	85438	broad.mit.edu	37	chr4	71200872	71200872	+	Frame_Shift_Del	DEL	C	-	-													tgctattcccaaatcagaaaCaactattacttcagaaggag							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71200872	-	-	71200872	7	5	204	1	0	1	0	1	0	0	0	0	2288	478	17	0	118	0	C4orf35	4	71200872	Frame_Shift_Del	DEL	C	TCGA-73-4659-01A-01D-1265-08	8297220	71200872	119953404	129	160253											
GC	2638	broad.mit.edu	37	chr4	72618391	72618391	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaccatttaaatgtaagGtcttactacatgtatttatt	4	5	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72618391	T	T	72618391	1	4	204	0	1	0	0	0	0	0	0	0	6344	1276	44	3		3	GC	4	72618391	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1417519	72618391	118535885	130	160254											
ANKRD17	26057	broad.mit.edu	37	chr4	73944684	73944684	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaccaaatcttaaaacCaggagatgttttaaatatat	4	5	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73944684	A	A	73944684	1	1	204	0	1	0	0	0	0	0	0	0	646	609	21	2		2	ANKRD17	4	73944684	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1326293	73944684	117209592	131	160255											
RASGEF1B	153020	broad.mit.edu	37	chr4	82369318	82369318	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggcttggtcttgagaaCtgtgagccgatctgtggatg	15	7	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82369318	G	G	82369318	3	3	204	1	0	0	0	0	1	0	0	0	13178	565	20	4	902	4	RASGEF1B	4	82369318	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	8424634	82369318	108784958	132	160256											
ADH1B	125	broad.mit.edu	37	chr4	100239267	100239267	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggctgcctcatggcctaaAatcacaggaaggggggtcac	13	12	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100239267	T	T	100239267	2	4	204	1	0	0	0	0	0	0	0	1	308	10	1	5		5	ADH1B	4	100239267	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	17869949	100239267	90915009	133	160257											
EMCN	51705	broad.mit.edu	37	chr4	101386786	101386786	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atatccaactaaaacttgaaGattaatttctagaagtcttc	4	7	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101386786	A	A	101386786	1	1	204	0	1	0	0	0	0	0	0	0	5128	957	33	4		4	EMCN	4	101386786	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1147519	101386786	89767490	134	160258											
ANP32C	23520	broad.mit.edu	37	chr4	165118386	165118386	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtcatccaggccctccaCgtggtcctcaatatctgagt	8	15	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165118386	G	G	165118386	3	3	204	1	0	0	0	0	1	0	0	0	707	536	19	4	229	4	ANP32C	4	165118386	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	63731600	165118386	26035890	135	160259											
WWC2	80014	broad.mit.edu	37	chr4	184205516	184205516	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctcacagaccttttctccAggagagcggaaccagtacat	9	13	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184205516	T	T	184205516	2	4	204	1	0	0	0	0	0	0	0	1	17539	175	7	5		5	WWC2	4	184205516	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	19087130	184205516	6948760	136	160260											
F11	2160	broad.mit.edu	37	chr4	187208902	187208902	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accaacgaagagtgccagaaGagatacagaggacataaaat	10	7	0	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187208902	C	C	187208902	3	2	204	1	0	0	0	0	1	0	0	0	5380	933	33	4	1691	4	F11	4	187208902	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3003386	187208902	3945374	137	160261											
ZFP42	132625	broad.mit.edu	37	chr4	188924086	188924086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaggcggaaatagaacCtgtcagcgcggtgtgggcct	15	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188924086	A	A	188924086	3	1	204	1	0	0	0	0	1	0	0	0	17776	681	24	2	127	2	ZFP42	4	188924086	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1715184	188924086	2230190	138	160262											
TRIML2	205860	broad.mit.edu	37	chr4	189026291	189026291	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtccatttcatccatatagGagttggccagagtgttttgg	11	7	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189026291	T	T	189026291	1	4	204	0	1	0	0	0	0	0	0	0	16676	1189	41	3		3	TRIML2	4	189026291	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	102205	189026291	2127985	139	160263											
CLPTM1L	81037	broad.mit.edu	37	chr5	1334344	1334344	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtccaggacccctgcaggaGgcccggggcccagggagccc	17	16	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1334344	C	C	1334344	1	2	204	0	1	0	0	0	0	0	0	0	3587	1015	35	4		4	CLPTM1L	5	1334344	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08		1334344	179580916	140	160264											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239824	5239824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catggtcaccattccttctgGagcccggagtatccgcatct	9	14	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5239824	T	T	5239824	3	4	204	1	0	0	0	0	1	0	0	0	261	1174	41	3	2371	3	ADAMTS16	5	5239824	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3905480	5239824	175675436	141	160265											
SEMA5A	9037	broad.mit.edu	37	chr5	9197187	9197187	+	Intron	DEL	C	-	-													acagctgcatggtgcatgcaCccgcggtttaaattaccctt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9197187	-	-	9197187	6	5	204	0	1	1	0	1	0	0	0	0	14150	522	18	0		0	SEMA5A	5	9197187	Intron	DEL	C	TCGA-73-4659-01A-01D-1265-08	3957363	9197187	171718073	142	160266											
TRIO	7204	broad.mit.edu	37	chr5	14331009	14331010	+	Splice_Site	DNP	GG	TT	TT													gattttgaagaagtggcacaGgtaaaacaatggcttctatt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	14331010	TT	TT	14331009	5	4	204	1	0	0	0	0	0	0	1	0	16677	1014	35	2	1892	2	TRIO	5	14331009	Splice_Site	DNP	GG	TCGA-73-4659-01A-01D-1265-08	5133822	14331009	166584251	143	160267											
ANKH	56172	broad.mit.edu	37	chr5	14797654	14797654	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctgtggcaagaatgaactCactataaggactgaaagaaa	9	7	1	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14797654	T	T	14797654	1	4	204	0	1	0	0	0	0	0	0	0	627	841	29	4		4	ANKH	5	14797654	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	466645	14797654	166117606	144	160268											
CDH6	1004	broad.mit.edu	37	chr5	31323516	31323516	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcttctctgttctacccGttccaaaagccaatggctgc	8	13	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31323516	T	T	31323516	1	4	204	0	1	0	0	0	0	0	0	0	3144	1160	40	3		3	CDH6	5	31323516	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	16525862	31323516	149591744	145	160269											
PDZD2	23037	broad.mit.edu	37	chr5	31847460	31847460	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agacgacaagagggtaaaacCgattactatgctaagaaacg	10	7	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31847460	G	G	31847460	1	3	204	0	1	0	0	0	0	0	0	0	11795	667	23	4		4	PDZD2	5	31847460	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	523944	31847460	149067800	146	160270											
ADAMTS12	81792	broad.mit.edu	37	chr5	33561189	33561189	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggaggtggcatctttttgcAgggtcaggtctctggatggc	16	8	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33561189	T	T	33561189	2	4	204	1	0	0	0	0	0	0	0	1	257	175	7	5		5	ADAMTS12	5	33561189	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	1713729	33561189	147354071	147	160271											
ADAMTS12	81792	broad.mit.edu	37	chr5	33576896	33576896	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tccagtggaaatgagatagcGagagctcagctcaggttggg	15	7	2	2	rs145508149	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33576896	C	C	33576896	3	2	204	1	0	0	0	0	1	0	0	0	257	1058	37	4	1573	4	ADAMTS12	5	33576896	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	15707	33576896	147338364	148	160272											
NIPBL	25836	broad.mit.edu	37	chr5	36962075	36962075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgaacaatttttgtatGttatttgactattttgcaag	7	3	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36962075	T	T	36962075	1	4	204	0	1	0	0	0	0	0	0	0	10523	1392	48	3		3	NIPBL	5	36962075	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	3385179	36962075	143953185	149	160273											
NUP155	9631	broad.mit.edu	37	chr5	37370996	37370996	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaactgacggtcgatgagCcgtccagcattttccagagc	11	12	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37370996	A	A	37370996	2	1	204	1	0	0	0	0	0	0	0	1	10851	726	26	3		3	NUP155	5	37370996	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	408921	37370996	143544264	150	160274											
MAP3K1	4214	broad.mit.edu	37	chr5	56160442	56160442	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctcctgacctcatgatcCgccctcctcggcctcccaaa	6	19	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56160442	T	T	56160442	1	4	204	0	1	0	0	0	0	0	0	0	9335	667	23	4		4	MAP3K1	5	56160442	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	18789446	56160442	124754818	151	160275											
RGS7BP	401190	broad.mit.edu	37	chr5	63802441	63802441	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagcggcttcggcttggtgGatgtgtatgcatgagttctg	15	8	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63802441	T	T	63802441	1	4	204	0	1	0	0	0	0	0	0	0	13420	1189	41	3		3	RGS7BP	5	63802441	5'Flank	SNP	G	TCGA-73-4659-01A-01D-1265-08	7641999	63802441	117112819	152	160276											
ADAMTS6	11174	broad.mit.edu	37	chr5	64748458	64748458	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttatcattatttacttcAcagcaaaaatttatgacctt	2	8	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64748458	G	G	64748458	1	3	204	0	1	0	0	0	0	0	0	0	270	174	6	5		5	ADAMTS6	5	64748458	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	946017	64748458	116166802	153	160277											
CCDC125	202243	broad.mit.edu	37	chr5	68588268	68588268	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggggaatcaaattaacaTatgcaatctcactgcctagc	7	9	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68588268	A	A	68588268	1	1	204	0	1	0	0	0	0	0	0	0	2787	1421	49	5		5	CCDC125	5	68588268	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3839810	68588268	112326992	154	160278											
IQGAP2	10788	broad.mit.edu	37	chr5	75993856	75993857	+	Frame_Shift_Ins	INS	-	T	T													gtaagcttcgaaaagctgaaINSttggcaaaacttcagcagac							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75993857	T	T	75993856	7	5	204	1	0	1	1	0	0	0	0	0	7885	98	4	0	4381	0	IQGAP2	5	75993856	Frame_Shift_Ins	INS	-	TCGA-73-4659-01A-01D-1265-08	7405588	75993856	104921404	155	160279											
APC	324	broad.mit.edu	37	chr5	112175531	112175531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaccatgcagtggaatgGtaagtggcattataagcccc	12	8	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112175531	A	A	112175531	3	1	204	1	0	0	0	0	1	0	0	0	765	1261	44	4	4298	4	APC	5	112175531	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	36181675	112175531	68739729	156	160280											
ADAMTS19	171019	broad.mit.edu	37	chr5	128956549	128956549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaagtggaaaggccacCagagtaaaactgaaggtact	12	7	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128956549	A	A	128956549	1	1	204	0	1	0	0	0	0	0	0	0	264	609	21	2		2	ADAMTS19	5	128956549	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	16781018	128956549	51958711	157	160281											
PCDHA5	56143	broad.mit.edu	37	chr5	140203040	140203040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggacgagaacgacaaCgcgccggcgctgctggtgcc	16	13	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140203040	A	A	140203040	3	1	204	1	0	0	0	0	1	0	0	0	11621	535	19	3	1682	3	PCDHA5	5	140203040	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	11246491	140203040	40712220	158	160282											
PCDHA13	56136	broad.mit.edu	37	chr5	140263146	140263146	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccgcgcgggacgggggCtcgccttcgctgtgggccac	18	14	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140263146	A	A	140263146	2	1	204	1	0	0	0	0	0	0	0	1	11617	784	28	3		3	PCDHA13	5	140263146	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	60106	140263146	40652114	159	160283											
PCDHB1	29930	broad.mit.edu	37	chr5	140433455	140433455	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttgcccccaaattctgaTaggaataagtctcagagatt	8	8	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140433455	A	A	140433455	3	1	204	1	0	0	0	0	1	0	0	0	11628	1403	49	5	2402	5	PCDHB1	5	140433455	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	170309	140433455	40481805	160	160284											
PCDHB13	56123	broad.mit.edu	37	chr5	140594762	140594762	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtctgcatttaccagccCaatacctgagaacgcgcctg	8	14	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140594762	A	A	140594762	3	1	204	1	0	0	0	0	1	0	0	0	11632	594	21	2	1069	2	PCDHB13	5	140594762	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	161307	140594762	40320498	161	160285											
PCDHGA7	56108	broad.mit.edu	37	chr5	140763083	140763083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaccgggaggaagagcGggttcaccacctggtcctca	15	12	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140763083	T	T	140763083	3	4	204	1	0	0	0	0	1	0	0	0	11653	1116	39	1	619	1	PCDHGA7	5	140763083	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	168321	140763083	40152177	162	160286											
SH3TC2	79628	broad.mit.edu	37	chr5	148386452	148386452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggctcttaccttcagctGgcagaaggtgagtctgccca	11	12	4	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148386452	T	T	148386452	3	4	204	1	0	0	0	0	1	0	0	0	14375	1357	47	2	207	2	SH3TC2	5	148386452	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	7623369	148386452	32528808	163	160287											
PDE6A	5145	broad.mit.edu	37	chr5	149264140	149264140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttttgaaagatattcagGctctaaagaaaaaaagagaa	9	3	2	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149264140	T	T	149264140	3	4	204	1	0	0	0	0	1	0	0	0	11739	1194	42	3	681	3	PDE6A	5	149264140	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	877688	149264140	31651120	164	160288											
SLC6A7	6534	broad.mit.edu	37	chr5	149582308	149582308	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggggtgagcatgtgtgtTgggtagagatggggctgggc	22	3	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149582308	A	A	149582308	1	1	204	0	1	0	0	0	0	0	0	0	14803	1827	63	5		5	SLC6A7	5	149582308	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	318168	149582308	31332952	165	160289											
SLC36A1	206358	broad.mit.edu	37	chr5	150847497	150847497	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgttcaggtacatgcctAggccctctcctatcatcttg	7	13	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150847497	G	G	150847497	1	3	204	0	1	0	0	0	0	0	0	0	14707	435	15	5		5	SLC36A1	5	150847497	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	1265189	150847497	30067763	166	160290											
KIF4B	285643	broad.mit.edu	37	chr5	154394443	154394443	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatcaagaacaaacctattGttaatattgatccccacaca	3	10	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154394443	C	C	154394443	3	2	204	1	0	0	0	0	1	0	0	0	8374	1377	48	4	1026	4	KIF4B	5	154394443	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3546946	154394443	26520817	167	160291											
TIMD4	91937	broad.mit.edu	37	chr5	156378554	156378554	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggcccttccttagaaggCtcgggagtcagaagacctgt	13	10	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156378554	T	T	156378554	2	4	204	1	0	0	0	0	0	0	0	1	16026	796	28	4		4	TIMD4	5	156378554	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	1984111	156378554	24536706	168	160292											
ADAM19	8728	broad.mit.edu	37	chr5	156932741	156932741	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgagcagcaatctgcagaatCatgggtcatgccaaagttgt	11	9	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156932741	A	A	156932741	3	1	204	1	0	0	0	0	1	0	0	0	240	826	29	3	1742	3	ADAM19	5	156932741	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	554187	156932741	23982519	169	160293											
ADAM19	8728	broad.mit.edu	37	chr5	156997870	156997870	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaacctcagttgtcaactcCtgccagtgtaaatgaggtct	8	11	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156997870	G	G	156997870	1	3	204	0	1	0	0	0	0	0	0	0	240	696	24	4		4	ADAM19	5	156997870	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	65129	156997870	23917390	170	160294											
RARS	5917	broad.mit.edu	37	chr5	167943746	167943746	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accagggcagaagcagcagtCagtaagctatgaaatactgt	11	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167943746	T	T	167943746	1	4	204	0	1	0	0	0	0	0	0	0	13166	841	29	4		4	RARS	5	167943746	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	10945876	167943746	12971514	171	160295											
DRD1	1812	broad.mit.edu	37	chr5	174869878	174869878	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gccttccagggcatgaccagGacggccaccaagagatctga	12	13	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	174869878	A	A	174869878	2	1	204	1	0	0	0	0	0	0	0	1	4796	1161	41	4		4	DRD1	5	174869878	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	6926132	174869878	6045382	172	160296											
UNC5A	90249	broad.mit.edu	37	chr5	176295144	176295144	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccagggctgcccaccatGgaggtccgcattaatgtctc	10	16	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176295144	T	T	176295144	3	4	204	1	0	0	0	0	1	0	0	0	17117	1348	47	2	316	2	UNC5A	5	176295144	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1425266	176295144	4620116	173	160297											
ADAMTS2	9509	broad.mit.edu	37	chr5	178581831	178581832	+	Missense_Mutation	DNP	GG	TT	TT													ttacacgtggccagtctcatGggccaccacaaacgctgagg							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	178581832	TT	TT	178581831	3	4	204	1	0	0	0	0	1	0	0	0	265	1348	47	2	2552	2	ADAMTS2	5	178581831	Missense_Mutation	DNP	GG	TCGA-73-4659-01A-01D-1265-08	2286687	178581831	2333429	174	160298											
LY86	9450	broad.mit.edu	37	chr6	6625237	6625237	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcaacattagatttggaaTtattctgagtaagtaaaaaa	6	3	2	2	rs142377958	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6625237	C	C	6625237	3	2	204	1	0	0	0	0	1	0	0	0	9188	1493	52	5	221	5	LY86	6	6625237	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08		6625237	164489830	175	160299											
SLC17A3	10786	broad.mit.edu	37	chr6	25849560	25849560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacctttataagtggatttAgcagagcatctttggagtcc	9	8	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25849560	T	T	25849560	1	4	204	0	1	0	0	0	0	0	0	0	14531	435	15	5		5	SLC17A3	6	25849560	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	19224323	25849560	145265507	176	160300											
PGBD1	84547	broad.mit.edu	37	chr6	28254889	28254889	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acggatcagctcatctccagGaaaaaaaccccagagacaag	8	12	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28254889	C	C	28254889	3	2	204	1	0	0	0	0	1	0	0	0	11875	1175	41	4	596	4	PGBD1	6	28254889	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	2405329	28254889	142860178	177	160301											
CFB	629	broad.mit.edu	37	chr6	31917095	31917095	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctatacattggcaaggatcGcaaaaacccaagggaggatt	11	8	0	0	rs150398964		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31917095	A	A	31917095	3	1	204	1	0	0	0	0	1	0	0	0	3308	1087	38	4	1278	4	CFB	6	31917095	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3662206	31917095	139197972	178	160302											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33074343	33074343	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccaggcagaccagaggaGcaaatagacttacttgccaa	12	10	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33074343	A	A	33074343	1	1	204	0	1	0	0	0	0	0	0	0	7270	986	34	4		4	HLA-DPB1	6	33074343	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1157248	33074343	138040724	179	160303											
RNF8	9025	broad.mit.edu	37	chr6	37336424	37336424	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggagacaatatatccttgTctttccccaaagaatgacca	7	10	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37336424	C	C	37336424	2	2	204	1	0	0	0	0	0	0	0	1	13611	1673	58	5		5	RNF8	6	37336424	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	4262081	37336424	133778643	180	160304											
TTBK1	84630	broad.mit.edu	37	chr6	43251119	43251119	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgggcagccagctggacGtatctgagccaggcaccctg	13	15	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43251119	T	T	43251119	3	4	204	1	0	0	0	0	1	0	0	0	16802	1145	40	3	2691	3	TTBK1	6	43251119	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	5914695	43251119	127863948	181	160305											
GPR115	221393	broad.mit.edu	37	chr6	47675979	47675979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggagataaacttcaaaGccctgaagggaaacccaaga	11	9	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47675979	T	T	47675979	3	4	204	1	0	0	0	0	1	0	0	0	6697	971	34	3	119	3	GPR115	6	47675979	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	4424860	47675979	123439088	182	160306											
GCM1	8521	broad.mit.edu	37	chr6	52998877	52998877	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagctctactcacgctgctgCttctgccgggccttgtcaca	9	15	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52998877	G	G	52998877	3	3	204	1	0	0	0	0	1	0	0	0	6359	796	28	4	1005	4	GCM1	6	52998877	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	5322898	52998877	118116190	183	160307											
GFRAL	389400	broad.mit.edu	37	chr6	55223906	55223906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctttgtgtaagattttcCagcacatgcttcatagaaaa	6	7	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55223906	A	A	55223906	3	1	204	1	0	0	0	0	1	0	0	0	6415	595	21	2	944	2	GFRAL	6	55223906	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	2225029	55223906	115891161	184	160308											
COL21A1	81578	broad.mit.edu	37	chr6	56035464	56035464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttaacttgagggttagCaaaggtaaccacttgtgagc	10	8	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56035464	A	A	56035464	3	1	204	1	0	0	0	0	1	0	0	0	3712	710	25	3	1968	3	COL21A1	6	56035464	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	811558	56035464	115079603	185	160309											
DST	667	broad.mit.edu	37	chr6	56417220	56417220	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgattccaacaaggtcaGgagaggtttcttctgtggct	11	7	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56417220	A	A	56417220	3	1	204	1	0	0	0	0	1	0	0	0	4823	1000	35	4	7186	4	DST	6	56417220	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	381756	56417220	114697847	186	160310											
BAI3	577	broad.mit.edu	37	chr6	69349144	69349144	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaatcatgtgggatcatgTatacaaaatgcacctgccct	8	10	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69349144	A	A	69349144	3	1	204	1	0	0	0	0	1	0	0	0	1305	1638	57	5	579	5	BAI3	6	69349144	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	12931924	69349144	101765923	187	160311											
COL19A1	1310	broad.mit.edu	37	chr6	70647843	70647843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaacaaagcgttatcttgCtagtgccagcttcacattta	8	9	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70647843	A	A	70647843	1	1	204	0	1	0	0	0	0	0	0	0	3708	812	28	3		3	COL19A1	6	70647843	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1298699	70647843	100467224	188	160312											
TTK	7272	broad.mit.edu	37	chr6	80720675	80720675	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaagaagaatttatcagGtaactattaaggtatactaa	8	3	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80720675	T	T	80720675	5	4	204	1	0	0	0	0	0	0	1	0	16846	1275	44	3	628	3	TTK	6	80720675	Splice_Site	SNP	G	TCGA-73-4659-01A-01D-1265-08	10072832	80720675	90394392	189	160313											
GABRR1	2569	broad.mit.edu	37	chr6	89909201	89909201	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttacttgaaattttactAtggaggaaataggcaaaagg	9	3	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89909201	G	G	89909201	1	3	204	0	1	0	0	0	0	0	0	0	6236	464	16	5		5	GABRR1	6	89909201	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	9188526	89909201	81205866	190	160314											
MDN1	23195	broad.mit.edu	37	chr6	90428850	90428850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggattatcctagtctcCttacctgaacatcataggga	8	9	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90428850	A	A	90428850	1	1	204	0	1	0	0	0	0	0	0	0	9508	696	24	2		2	MDN1	6	90428850	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	519649	90428850	80686217	191	160315											
FBXL4	26235	broad.mit.edu	37	chr6	99323305	99323305	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttacctaatatgtccagcTgctgtaacctggtacaatta	6	11	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99323305	G	G	99323305	3	3	204	1	0	0	0	0	1	0	0	0	5778	1580	55	5	185	5	FBXL4	6	99323305	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	8894455	99323305	71791762	192	160316											
ASCC3	10973	broad.mit.edu	37	chr6	101095364	101095364	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagattggtggttatacccAatgtgcttttaaatttgtca	10	5	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101095364	T	T	101095364	1	4	204	0	1	0	0	0	0	0	0	0	1037	145	5	5		5	ASCC3	6	101095364	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	1772059	101095364	70019703	193	160317											
SCML4	256380	broad.mit.edu	37	chr6	108070809	108070810	+	Intron	DNP	CC	AA	AA													ctcagcaacaactctttaatCcacaaagtaacaattagatg							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	108070810	AA	AA	108070809	1	1	204	0	1	0	0	0	0	0	0	0	14024	870	30	3		3	SCML4	6	108070809	Intron	DNP	CC	TCGA-73-4659-01A-01D-1265-08	6975445	108070809	63044258	194	160318											
GJA1	2697	broad.mit.edu	37	chr6	121769164	121769164	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaggcttgaaagcatcaaGattccactcaattgtggaga	9	8	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121769164	T	T	121769164	1	4	204	0	1	0	0	0	0	0	0	0	6464	957	33	3		3	GJA1	6	121769164	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	13698355	121769164	49345903	195	160319											
LAMA2	3908	broad.mit.edu	37	chr6	129714150	129714150	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaccctaaggcagtgacAtgagctcattgtctattatt	7	8	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129714150	G	G	129714150	1	3	204	0	1	0	0	0	0	0	0	0	8678	232	8	5		5	LAMA2	6	129714150	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	7944986	129714150	41400917	196	160320											
EPB41L2	2037	broad.mit.edu	37	chr6	131190797	131190797	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcctctgcttcttctcccAtgtcttgcttaagagcgcct	6	15	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131190797	T	T	131190797	3	4	204	1	0	0	0	0	1	0	0	0	5195	217	8	5	524	5	EPB41L2	6	131190797	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	1476647	131190797	39924270	197	160321											
C6orf192	116843	broad.mit.edu	37	chr6	133091382	133091383	+	3'UTR	DNP	CC	AA	AA													caggagcattcatttctcaaCcttgtatcaatccaggatcc							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	133091383	AA	AA	133091382	1	1	204	0	1	0	0	0	0	0	0	0	2372	522	18	3		3	C6orf192	6	133091382	3'UTR	DNP	CC	TCGA-73-4659-01A-01D-1265-08	1900585	133091382	38023685	198	160322											
HECA	51696	broad.mit.edu	37	chr6	139498167	139498167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatatagcaacgtccagcaGtgtccacactgtgggaacct	10	11	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139498167	T	T	139498167	3	4	204	1	0	0	0	0	1	0	0	0	7105	1020	36	3	1571	3	HECA	6	139498167	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	6406785	139498167	31616900	199	160323											
TXLNB	167838	broad.mit.edu	37	chr6	139609688	139609688	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgacagtgggtggctctcCagaagcaacgggttctcttc	12	10	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139609688	A	A	139609688	4	1	204	1	0	0	0	0	0	1	0	0	16914	603	21	2	1741	2	TXLNB	6	139609688	Nonsense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	111521	139609688	31505379	200	160324											
PHACTR2	9749	broad.mit.edu	37	chr6	144110129	144110129	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcccccctacttaagtcatCccaggggacgagatcttacc	7	15	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144110129	T	T	144110129	1	4	204	0	1	0	0	0	0	0	0	0	11905	870	30	4		4	PHACTR2	6	144110129	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	4500441	144110129	27004938	201	160325											
SYNE1	23345	broad.mit.edu	37	chr6	152725528	152725528	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taataatttcaagaagagctAactttgtcgaaataccccaa	5	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152725528	G	G	152725528	1	3	204	0	1	0	0	0	0	0	0	0	15564	377	13	5		5	SYNE1	6	152725528	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	8615399	152725528	18389539	202	160326											
SMOC2	64094	broad.mit.edu	37	chr6	169008863	169008863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccgaaatgtgacaacaCggccagggcccacccagcca	11	16	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169008863	A	A	169008863	3	1	204	1	0	0	0	0	1	0	0	0	14916	536	19	3	918	3	SMOC2	6	169008863	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	16283335	169008863	2106204	203	160327											
FBXL18	80028	broad.mit.edu	37	chr7	5540239	5540239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaactgctggcactgcaggCcgatattgaccagcccggag	13	13	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5540239	A	A	5540239	3	1	204	1	0	0	0	0	1	0	0	0	5771	739	26	3	507	3	FBXL18	7	5540239	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08		5540239	153598424	204	160328											
ICA1	3382	broad.mit.edu	37	chr7	8275420	8275420	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttggctcagcattggtgAgggctaacatgatacttact	10	7	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8275420	G	G	8275420	1	3	204	0	1	0	0	0	0	0	0	0	7547	319	11	5		5	ICA1	7	8275420	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	2735181	8275420	150863243	205	160329											
NXPH1	30010	broad.mit.edu	37	chr7	8790645	8790645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgttttcaggtcacatGtgccaatttaacgaacggtg	9	9	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8790645	T	T	8790645	3	4	204	1	0	0	0	0	1	0	0	0	10885	1377	48	3	68	3	NXPH1	7	8790645	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	515225	8790645	150348018	206	160330											
ABCB5	340273	broad.mit.edu	37	chr7	20744298	20744299	+	Intron	INS	-	A	A													agaaaaatcacaagtcagatINSaaaaaaaatgatttttgaca							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20744299	A	A	20744298	6	5	204	0	1	1	1	0	0	0	0	0	44	1421	49	0		0	ABCB5	7	20744298	Intron	INS	-	TCGA-73-4659-01A-01D-1265-08	11953653	20744298	138394365	207	160331											
GPNMB	10457	broad.mit.edu	37	chr7	23296798	23296798	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagttaataacagtcaccCtgctaactttccttagcatg	7	10	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23296798	T	T	23296798	1	4	204	0	1	0	0	0	0	0	0	0	6685	696	24	4		4	GPNMB	7	23296798	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	2552500	23296798	135841865	208	160332											
OSBPL3	26031	broad.mit.edu	37	chr7	24856101	24856101	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaacatttaaacctactgtCagacagattaaaagaaaaaa	6	6	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24856101	A	A	24856101	1	1	204	0	1	0	0	0	0	0	0	0	11373	841	29	3		3	OSBPL3	7	24856101	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1559303	24856101	134282562	209	160333											
PDE1C	5137	broad.mit.edu	37	chr7	31855474	31855474	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catcagtagggttgttcaccAgtttccattcattatgtcat	7	9	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31855474	G	G	31855474	1	3	204	0	1	0	0	0	0	0	0	0	11729	203	7	5		5	PDE1C	7	31855474	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	6999373	31855474	127283189	210	160334											
FKBP9	11328	broad.mit.edu	37	chr7	33035768	33035768	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cattaattccccgtgtctgtCctttagggaatatccccggc	8	13	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33035768	T	T	33035768	1	4	204	0	1	0	0	0	0	0	0	0	5972	870	30	4		4	FKBP9	7	33035768	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1180294	33035768	126102895	211	160335											
NPC1L1	29881	broad.mit.edu	37	chr7	44571766	44571766	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccctctccctggccaggCgggggcagctcctggggctt	15	16	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44571766	A	A	44571766	2	1	204	1	0	0	0	0	0	0	0	1	10666	755	27	3		3	NPC1L1	7	44571766	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	11535998	44571766	114566897	212	160336											
ADCY1	107	broad.mit.edu	37	chr7	45743439	45743439	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacaatatgtcacattcttCgtagctggaatgagagaaag	9	7	3	2	rs77265241	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45743439	A	A	45743439	1	1	204	0	1	0	0	0	0	0	0	0	292	899	31	3		3	ADCY1	7	45743439	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1171673	45743439	113395224	213	160337											
ZNF713	349075	broad.mit.edu	37	chr7	56006546	56006546	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacattgaaaaactttcaAtgccgtgtatgccttgtaca	7	10	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56006546	C	C	56006546	1	2	204	0	1	0	0	0	0	0	0	0	18245	116	4	5		5	ZNF713	7	56006546	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	10263107	56006546	103132117	214	160338											
SEMA3A	10371	broad.mit.edu	37	chr7	83636847	83636847	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagaataaaaacagaagttCatctttatacaatggtaaga	6	5	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83636847	A	A	83636847	1	1	204	0	1	0	0	0	0	0	0	0	14137	841	29	3		3	SEMA3A	7	83636847	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	27630301	83636847	75501816	215	160339											
MGC26647	219557	broad.mit.edu	37	chr7	88423561	88423561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtatgggtctattataCatgtttataaatgttgccgg	10	4	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88423561	A	A	88423561	3	1	204	1	0	0	0	0	1	0	0	0	9643	478	17	3	69	3	MGC26647	7	88423561	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	4786714	88423561	70715102	216	160340											
DYNC1I1	1780	broad.mit.edu	37	chr7	95439681	95439681	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagttatgttattaacttTtcttactgacgtctacttct	4	7	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95439681	C	C	95439681	1	2	204	0	1	0	0	0	0	0	0	0	4882	1856	64	5		5	DYNC1I1	7	95439681	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	7016120	95439681	63698982	217	160341											
DYNC1I1	1780	broad.mit.edu	37	chr7	95439773	95439773	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcgcaaacgacgagagacaGaggctttgctgcaaagcatt	11	9	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95439773	A	A	95439773	3	1	204	1	0	0	0	0	1	0	0	0	4882	943	33	4	184	4	DYNC1I1	7	95439773	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	92	95439773	63698890	218	160342											
PILRB	29990	broad.mit.edu	37	chr7	99950799	99950799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgggctggccacatgccGtgcagagctctgaccatcct	11	15	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99950799	T	T	99950799	1	4	204	0	1	0	0	0	0	0	0	0	12021	1160	40	3		3	PILRB	7	99950799	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	4511026	99950799	59187864	219	160343											
ZAN	7455	broad.mit.edu	37	chr7	100388763	100388763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggaagggatgaggcggGggaggtgaacaacaatgtct	18	6	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100388763	T	T	100388763	1	4	204	0	1	0	0	0	0	0	0	0	17640	1247	43	2		2	ZAN	7	100388763	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	437964	100388763	58749900	220	160344											
C7orf52	375607	broad.mit.edu	37	chr7	100816680	100816680	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctgtctcttgaccagcTgcgagcagaagcgctgcagc	14	12	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100816680	A	A	100816680	3	1	204	1	0	0	0	0	1	0	0	0	2426	1580	55	5	683	5	C7orf52	7	100816680	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	427917	100816680	58321983	221	160345											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518009	113518009	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagtagaagcagagctgtcAgattccttttcacctgaagt	9	9	2	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113518009	G	G	113518009	2	3	204	1	0	0	0	0	0	0	0	1	12472	175	7	5		5	PPP1R3A	7	113518009	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	12701329	113518009	45620654	222	160346											
ING3	54556	broad.mit.edu	37	chr7	120606623	120606623	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtagttgagtgacatGtgaagttctgcggtgacatt	13	6	1	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120606623	A	A	120606623	1	1	204	0	1	0	0	0	0	0	0	0	7807	1392	48	4		4	ING3	7	120606623	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	7088614	120606623	38532040	223	160347											
IQUB	154865	broad.mit.edu	37	chr7	123149904	123149904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagatcttgattgtttaCatgttaaaactagaaaagtc	6	5	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123149904	A	A	123149904	1	1	204	0	1	0	0	0	0	0	0	0	7890	493	17	3		3	IQUB	7	123149904	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	2543281	123149904	35988759	224	160348											
FLNC	2318	broad.mit.edu	37	chr7	128496821	128496821	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagcacaccatccgcttcatCccccacgagaatggcgtcca	7	17	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128496821	G	G	128496821	3	3	204	1	0	0	0	0	1	0	0	0	5993	845	30	4	7585	4	FLNC	7	128496821	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	5346917	128496821	30641842	225	160349											
CPA5	93979	broad.mit.edu	37	chr7	130008537	130008537	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catccccatgccctcatcccGacctcttagaaaataaatac	3	16	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130008537	A	A	130008537	1	1	204	0	1	0	0	0	0	0	0	0	3825	1073	37	4		4	CPA5	7	130008537	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	1511716	130008537	29130126	226	160350											
PLXNA4	91584	broad.mit.edu	37	chr7	132169855	132169856	+	Intron	DNP	CC	AA	AA													attaatctacatgacaattcCcaataagaatggtttttgta							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	132169856	AA	AA	132169855	1	1	204	0	1	0	0	0	0	0	0	0	12217	638	22	2		2	PLXNA4	7	132169855	Intron	DNP	CC	TCGA-73-4659-01A-01D-1265-08	2161318	132169855	26968808	227	160351											
AKR1B15	441282	broad.mit.edu	37	chr7	134253097	134253097	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcacatggcgcatttggTgggaggccttcacttcaagg	15	9	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134253097	G	G	134253097	1	3	204	0	1	0	0	0	0	0	0	0	468	1711	59	5		5	AKR1B15	7	134253097	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	2083242	134253097	24885566	228	160352											
AKR1B15	441282	broad.mit.edu	37	chr7	134254059	134254059	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagctttgttatagatggCctgagccaggttagatgagg	13	6	1	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134254059	A	A	134254059	1	1	204	0	1	0	0	0	0	0	0	0	468	754	26	3		3	AKR1B15	7	134254059	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	962	134254059	24884604	229	160353											
MGAM	8972	broad.mit.edu	37	chr7	141760223	141760223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagggtttgtaggcagggGcagctgttcctgggattgtg	18	6	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141760223	T	T	141760223	1	4	204	0	1	0	0	0	0	0	0	0	9634	1218	42	3		3	MGAM	7	141760223	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	7506164	141760223	17378440	230	160354											
TRPV5	56302	broad.mit.edu	37	chr7	142625166	142625166	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcacatgacaggcctgatcCtccttggcatccatacctct	6	16	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142625166	G	G	142625166	1	3	204	0	1	0	0	0	0	0	0	0	16724	696	24	4		4	TRPV5	7	142625166	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	864943	142625166	16513497	231	160355											
C7orf34	135927	broad.mit.edu	37	chr7	142636692	142636692	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcactgggagcagggggcGgccaaaggcagtgggtgggc	23	8	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142636692	A	A	142636692	3	1	204	1	0	0	0	0	1	0	0	0	2414	1116	39	4	51	4	C7orf34	7	142636692	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	11526	142636692	16501971	232	160356											
OR6V1	346517	broad.mit.edu	37	chr7	142749382	142749382	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtctctatctctctgtttCtgcctctccgtctgtctttt	5	14	7	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142749382	A	A	142749382	1	1	204	0	1	0	0	0	0	0	0	0	11305	928	32	3		3	OR6V1	7	142749382	5'Flank	SNP	C	TCGA-73-4659-01A-01D-1265-08	112690	142749382	16389281	233	160357											
RHEB	6009	broad.mit.edu	37	chr7	151188085	151188085	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccttcaacaaattgaatcGtcaatgaggatttccctata	7	9	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151188085	A	A	151188085	3	1	204	1	0	0	0	0	1	0	0	0	13437	1145	40	4	514	4	RHEB	7	151188085	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	8438703	151188085	7950578	234	160358											
PTPRN2	5799	broad.mit.edu	37	chr7	157396617	157396617	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggacgtgatttcccccgaGaaccttcccacgtgatttgc	11	13	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157396617	A	A	157396617	1	1	204	0	1	0	0	0	0	0	0	0	12916	957	33	4		4	PTPRN2	7	157396617	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	6208532	157396617	1742046	235	160359											
CSMD1	64478	broad.mit.edu	37	chr8	3072116	3072116	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatcttatagccagagtcAcactggtaggtgatggtgga	13	6	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3072116	T	T	3072116	4	4	204	1	0	0	0	0	0	1	0	0	3978	157	6	5	6088	5	CSMD1	8	3072116	Nonsense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08		3072116	143291906	236	160360											
DEFA6	1671	broad.mit.edu	37	chr8	6783434	6783434	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctggtcatttgccccacGctgctcctgggcatcagcct	10	16	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6783434	T	T	6783434	3	4	204	1	0	0	0	0	1	0	0	0	4426	1087	38	3	186	3	DEFA6	8	6783434	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3711318	6783434	139580588	237	160361											
FAM167A	83648	broad.mit.edu	37	chr8	11301689	11301689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggagcaagggctcctgccCcccacgctccccctcctcca	10	21	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11301689	A	A	11301689	3	1	204	1	0	0	0	0	1	0	0	0	5528	623	22	2	420	2	FAM167A	8	11301689	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	4518255	11301689	135062333	238	160362											
SGCZ	137868	broad.mit.edu	37	chr8	13947932	13947932	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaaaggctattctggtGtgaggagaaatcagtcactt	11	6	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13947932	T	T	13947932	1	4	204	0	1	0	0	0	0	0	0	0	14317	1392	48	3		3	SGCZ	8	13947932	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	2646243	13947932	132416090	239	160363											
GSR	2936	broad.mit.edu	37	chr8	30538645	30538645	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaccagaaatacataacctCaatcaaaccacgaggaaata	5	10	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30538645	A	A	30538645	1	1	204	0	1	0	0	0	0	0	0	0	6894	841	29	3		3	GSR	8	30538645	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	16590713	30538645	115825377	240	160364											
KCNU1	157855	broad.mit.edu	37	chr8	36693744	36693744	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctacatatcaatttaactctGaattaaattatattacaaag	2	6	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36693744	A	A	36693744	1	1	204	0	1	0	0	0	0	0	0	0	8163	1305	45	4		4	KCNU1	8	36693744	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	6155099	36693744	109670278	241	160365											
KCNU1	157855	broad.mit.edu	37	chr8	36694017	36694017	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttggagtcttattaagatGgataatcacttaacaatgta	7	4	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36694017	A	A	36694017	1	1	204	0	1	0	0	0	0	0	0	0	8163	1363	47	4		4	KCNU1	8	36694017	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	273	36694017	109670005	242	160366											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37729987	37729987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caatggaagggactgatgctCccatgggaagagggggcgcc	17	9	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37729987	A	A	37729987	3	1	204	1	0	0	0	0	1	0	0	0	13001	855	30	3	1530	3	RAB11FIP1	8	37729987	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1035970	37729987	108634035	243	160367											
ADRB3	155	broad.mit.edu	37	chr8	37823766	37823766	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggccagcgaagtcacgaaCacgttggtcatggtctggag	15	10	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37823766	A	A	37823766	2	1	204	1	0	0	0	0	0	0	0	1	342	465	17	3		3	ADRB3	8	37823766	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	93779	37823766	108540256	244	160368											
ADAM9	8754	broad.mit.edu	37	chr8	38913347	38913347	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attatttatttttgatttagAtattttaaaaaaggtaatga	5	0	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38913347	G	G	38913347	1	3	204	0	1	0	0	0	0	0	0	0	253	348	12	5		5	ADAM9	8	38913347	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	1089581	38913347	107450675	245	160369											
ZMAT4	79698	broad.mit.edu	37	chr8	40389768	40389768	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcttcaggctataagacaGaaggaaacacagtgttacct	8	8	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40389768	A	A	40389768	1	1	204	0	1	0	0	0	0	0	0	0	17820	957	33	4		4	ZMAT4	8	40389768	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1476421	40389768	105974254	246	160370											
HOOK3	84376	broad.mit.edu	37	chr8	42829195	42829195	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaaggcagaggccactgAtgaataaattcttaaaacgt	10	6	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42829195	G	G	42829195	1	3	204	0	1	0	0	0	0	0	0	0	7351	348	12	5		5	HOOK3	8	42829195	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	2439427	42829195	103534827	247	160371											
PRKDC	5591	broad.mit.edu	37	chr8	48690420	48690420	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagccgaaaaggcatcaactCagggactggcagaaactaaa	10	9	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48690420	A	A	48690420	4	1	204	1	0	0	0	0	0	1	0	0	12627	835	29	3	529	3	PRKDC	8	48690420	Nonsense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	5861225	48690420	97673602	248	160372											
PRKDC	5591	broad.mit.edu	37	chr8	48762047	48762047	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcgcaaccagttcacaCagagactcctccagtatctg	7	13	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48762047	G	G	48762047	2	3	204	1	0	0	0	0	0	0	0	1	12627	465	17	4		4	PRKDC	8	48762047	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	71627	48762047	97601975	249	160373											
UBE2V2	7336	broad.mit.edu	37	chr8	48921115	48921115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgcccgagcgctgaccGtgcgggagaagcccgagtgc	17	14	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48921115	T	T	48921115	1	4	204	0	1	0	0	0	0	0	0	0	17002	1160	40	3		3	UBE2V2	8	48921115	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	159068	48921115	97442907	250	160374											
PCMTD1	115294	broad.mit.edu	37	chr8	52733224	52733224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catttatgaaatttctaagtGtgcgtcgaatgtaaatacga	8	5	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52733224	A	A	52733224	3	1	204	1	0	0	0	0	1	0	0	0	11680	1377	48	4	316	4	PCMTD1	8	52733224	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3812109	52733224	93630798	251	160375											
ST18	9705	broad.mit.edu	37	chr8	53028861	53028861	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagctggatgtcagcaaGgcttgaaatgagagcttggc	15	6	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53028861	A	A	53028861	3	1	204	1	0	0	0	0	1	0	0	0	15330	1000	35	4	174	4	ST18	8	53028861	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	295637	53028861	93335161	252	160376											
TCEB1	6921	broad.mit.edu	37	chr8	74872008	74872008	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttagcttacccattttgTtcttatgaaattctactttg	4	8	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74872008	C	C	74872008	1	2	204	0	1	0	0	0	0	0	0	0	15801	1740	60	5		5	TCEB1	8	74872008	5'UTR	SNP	T	TCGA-73-4659-01A-01D-1265-08	21843147	74872008	71492014	253	160377											
TMEM67	91147	broad.mit.edu	37	chr8	94797315	94797315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtagtataaagacattttGcaaaactagaaaaacactct	6	6	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94797315	T	T	94797315	1	4	204	0	1	0	0	0	0	0	0	0	16319	1334	46	3		3	TMEM67	8	94797315	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	19925307	94797315	51566707	254	160378											
STK3	6788	broad.mit.edu	37	chr8	99468255	99468256	+	Intron	DNP	AC	TA	TA													acagaaagaaagataccaatAcaatgaaattatccacatta							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	99468256	TA	TA	99468255	1	4	204	0	1	0	0	0	0	0	0	0	15413	406	14	5		5	STK3	8	99468255	Intron	DNP	AC	TCGA-73-4659-01A-01D-1265-08	4670940	99468255	46895767	255	160379											
VPS13B	157680	broad.mit.edu	37	chr8	100844746	100844746	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcagaaacagatcatGctgggcttttctcctgcccc	8	14	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100844746	T	T	100844746	3	4	204	1	0	0	0	0	1	0	0	0	17317	1319	46	3	9951	3	VPS13B	8	100844746	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1376491	100844746	45519276	256	160380											
RIMS2	9699	broad.mit.edu	37	chr8	104897845	104897845	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgaagtgatccgaatttgGcccgttatccagtaaagcca	9	11	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104897845	T	T	104897845	3	4	204	1	0	0	0	0	1	0	0	0	13479	1203	42	3	1158	3	RIMS2	8	104897845	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	4053099	104897845	41466177	257	160381											
ANGPT1	284	broad.mit.edu	37	chr8	108264187	108264187	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagttttccatggttttgtcCcgcagtatagaacattccat	7	10	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108264187	G	G	108264187	3	3	204	1	0	0	0	0	1	0	0	0	610	632	22	4	107	4	ANGPT1	8	108264187	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	3366342	108264187	38099835	258	160382											
RSPO2	340419	broad.mit.edu	37	chr8	108913234	108913234	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcacaccagtgtgcaGgagtggagagtagctttgtg	16	7	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108913234	T	T	108913234	1	4	204	0	1	0	0	0	0	0	0	0	13821	1015	35	2		2	RSPO2	8	108913234	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	649047	108913234	37450788	259	160383											
CSMD3	114788	broad.mit.edu	37	chr8	113277872	113277872	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgaggcatgtatttaatgGagaggagtagtaagcatatg	13	2	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113277872	T	T	113277872	1	4	204	0	1	0	0	0	0	0	0	0	3980	1189	41	3		3	CSMD3	8	113277872	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	4364638	113277872	33086150	260	160384											
ENPP2	5168	broad.mit.edu	37	chr8	120612880	120612880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagatcaggtagcccaggGccacagattcttctcaggca	11	11	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120612880	T	T	120612880	1	4	204	0	1	0	0	0	0	0	0	0	5172	1218	42	3		3	ENPP2	8	120612880	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	7335008	120612880	25751142	261	160385											
TATDN1	83940	broad.mit.edu	37	chr8	125534277	125534277	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctaatatcacaagtagacAatatgtaccccaactgtggc	6	10	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125534277	G	G	125534277	1	3	204	0	1	0	0	0	0	0	0	0	15710	145	5	5		5	TATDN1	8	125534277	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	4921397	125534277	20829745	262	160386											
ADCY8	114	broad.mit.edu	37	chr8	131916288	131916288	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctttggaaatgtgaatcctCctgtgtgtagaaggcatagg	13	6	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131916288	T	T	131916288	2	4	204	1	0	0	0	0	0	0	0	1	300	869	30	4		4	ADCY8	8	131916288	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	6382011	131916288	14447734	263	160387											
TG	7038	broad.mit.edu	37	chr8	134034400	134034400	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcctgagttctggtgaGttgctgcctctggtgggagc	16	9	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134034400	T	T	134034400	1	4	204	0	1	0	0	0	0	0	0	0	15936	1044	36	3		3	TG	8	134034400	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	2118112	134034400	12329622	264	160388											
WISP1	8840	broad.mit.edu	37	chr8	134232987	134232987	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggtgcccccacccgcgGcgcgtgagcatacctggcca	12	18	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134232987	T	T	134232987	2	4	204	1	0	0	0	0	0	0	0	1	17499	1190	42	3		3	WISP1	8	134232987	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	198587	134232987	12131035	265	160389											
CYP11B2	1585	broad.mit.edu	37	chr8	143995581	143995581	+	Intron	DEL	G	-	-													aaatgtggggcctgtagcctGgggatggggaacgtgggtgc							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143995581	-	-	143995581	6	5	204	0	1	1	0	1	0	0	0	0	4179	1363	47	0		0	CYP11B2	8	143995581	Intron	DEL	G	TCGA-73-4659-01A-01D-1265-08	9762594	143995581	2368441	266	160390											
SHARPIN	81858	broad.mit.edu	37	chr8	145153699	145153699	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccttgtaacctgtgggGgaggagctgggtcattcctg	14	11	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145153699	A	A	145153699	1	1	204	0	1	0	0	0	0	0	0	0	14380	1247	43	4		4	SHARPIN	8	145153699	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1158118	145153699	1210323	267	160391											
DMRT1	1761	broad.mit.edu	37	chr9	893993	893993	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgacctggtttcagactCcacctactacagcagcttct	6	15	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	893993	A	A	893993	3	1	204	1	0	0	0	0	1	0	0	0	4625	855	30	3	630	3	DMRT1	9	893993	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08		893993	140319438	268	160392											
PTPRD	5789	broad.mit.edu	37	chr9	8492918	8492918	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaccatctcctttggttGtgtaggctgtgacggtgagg	15	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8492918	T	T	8492918	3	4	204	1	0	0	0	0	1	0	0	0	12907	1377	48	3	3475	3	PTPRD	9	8492918	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	7598925	8492918	132720513	269	160393											
PTPRD	5789	broad.mit.edu	37	chr9	8633238	8633238	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaagcaccatcacaatgcTagtcttttcaatgatgctac	5	10	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8633238	A	A	8633238	1	1	204	0	1	0	0	0	0	0	0	0	12907	1537	53	5		5	PTPRD	9	8633238	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	140320	8633238	132580193	270	160394											
FREM1	158326	broad.mit.edu	37	chr9	14746969	14746969	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgatcccattgcactgataCagcttctggatgccttcttc	8	13	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14746969	A	A	14746969	2	1	204	1	0	0	0	0	0	0	0	1	6104	465	17	3		3	FREM1	9	14746969	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	6113731	14746969	126466462	271	160395											
C9orf93	203238	broad.mit.edu	37	chr9	15623519	15623519	+	Intron	SNP	G	A	A													acacacataaaacccattccGtgatttaagattggagagtt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15623519	A	A	15623519	1	1	204	0	1	0	0	0	0	0	0	0	2532	1160	40	4		4	C9orf93	9	15623519	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	876550	15623519	125589912	272	160396	680	2									
C9orf93	203238	broad.mit.edu	37	chr9	15623521	15623521	+	Intron	SNP	G	T	T													acacataaaacccattccgtGatttaagattggagagtttt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15623521	T	T	15623521	1	4	204	0	1	0	0	0	0	0	0	0	2532	1305	45	3		3	C9orf93	9	15623521	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	2	15623521	125589910	273	160397	680	2									
ACER2	340485	broad.mit.edu	37	chr9	19450737	19450737	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatagttggggtgtgggctAtcttttcaaaaatctatttg	11	4	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19450737	G	G	19450737	1	3	204	0	1	0	0	0	0	0	0	0	139	464	16	5		5	ACER2	9	19450737	3'UTR	SNP	A	TCGA-73-4659-01A-01D-1265-08	3827216	19450737	121762694	274	160398											
IFNA4	3441	broad.mit.edu	37	chr9	21187444	21187444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctattacccaggctgtgGgtctgaggcagatcacagcc	11	13	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21187444	A	A	21187444	2	1	204	1	0	0	0	0	0	0	0	1	7609	1219	43	4		4	IFNA4	9	21187444	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	1736707	21187444	120025987	275	160399											
IFNA4	3441	broad.mit.edu	37	chr9	21187546	21187546	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccattgggatgttgcaaatAttgctaggctacttgagatg	12	6	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21187546	G	G	21187546	1	3	204	0	1	0	0	0	0	0	0	0	7609	464	16	5		5	IFNA4	9	21187546	5'UTR	SNP	A	TCGA-73-4659-01A-01D-1265-08	102	21187546	120025885	276	160400											
ELAVL2	1993	broad.mit.edu	37	chr9	23701601	23701601	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccctacaccccttgatatGcctatggtagatttgagtaa	7	10	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23701601	A	A	23701601	2	1	204	1	0	0	0	0	0	0	0	1	5092	1333	46	4		4	ELAVL2	9	23701601	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	2514055	23701601	117511830	277	160401											
RECK	8434	broad.mit.edu	37	chr9	36120599	36120599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctggacatttcactaaGgattttaaattctctttgtt	8	6	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36120599	T	T	36120599	1	4	204	0	1	0	0	0	0	0	0	0	13308	1015	35	2		2	RECK	9	36120599	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	12418998	36120599	105092832	278	160402											
PRUNE2	158471	broad.mit.edu	37	chr9	79267519	79267519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatagatccttcactttggtCcagagaaagattgatatttg	8	6	1	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79267519	A	A	79267519	3	1	204	1	0	0	0	0	1	0	0	0	12747	855	30	3	865	3	PRUNE2	9	79267519	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	43146920	79267519	61945912	279	160403											
RASEF	158158	broad.mit.edu	37	chr9	85637335	85637335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgcatagctgccttgtcCtgggctctgaaattcaaaag	9	10	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85637335	A	A	85637335	3	1	204	1	0	0	0	0	1	0	0	0	13176	680	24	2	1697	2	RASEF	9	85637335	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	6369816	85637335	55576096	280	160404											
FRMD3	257019	broad.mit.edu	37	chr9	85987778	85987778	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttgtcagggaacagtatCtatctttggacacattgtag	10	6	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85987778	T	T	85987778	1	4	204	0	1	0	0	0	0	0	0	0	6110	928	32	4		4	FRMD3	9	85987778	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	350443	85987778	55225653	281	160405											
KIAA1529	57653	broad.mit.edu	37	chr9	100139294	100139294	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctccacccctgctctgtGccgggcactgtagctttacc	8	18	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100139294	C	C	100139294	1	2	204	0	1	0	0	0	0	0	0	0	8310	1334	46	4		4	KIAA1529	9	100139294	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	14151516	100139294	41074137	282	160406											
SVEP1	79987	broad.mit.edu	37	chr9	113148396	113148396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttactgatatttcccctcTtttcctaatgtatttctttg	4	10	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113148396	C	C	113148396	1	2	204	0	1	0	0	0	0	0	0	0	15538	1624	56	5		5	SVEP1	9	113148396	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	13009102	113148396	28065035	283	160407											
SVEP1	79987	broad.mit.edu	37	chr9	113251899	113251899	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagttcaagatgacgtttgGatggggaaacaaccaaacta	10	7	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113251899	T	T	113251899	1	4	204	0	1	0	0	0	0	0	0	0	15538	1189	41	3		3	SVEP1	9	113251899	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	103503	113251899	27961532	284	160408											
TLR4	7099	broad.mit.edu	37	chr9	120476416	120476416	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcataaagtatggtagaggTgaaaacatctatgatgcctt	10	5	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476416	A	A	120476416	2	1	204	1	0	0	0	0	0	0	0	1	16076	1683	59	5		5	TLR4	9	120476416	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	7224517	120476416	20737015	285	160409											
TLR4	7099	broad.mit.edu	37	chr9	120476829	120476830	+	Missense_Mutation	DNP	GG	TT	TT													cctggggcggcacatcttctGgagacgactcagaaaagccc							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	120476830	TT	TT	120476829	3	4	204	1	0	0	0	0	1	0	0	0	16076	1357	47	2	2433	2	TLR4	9	120476829	Missense_Mutation	DNP	GG	TCGA-73-4659-01A-01D-1265-08	413	120476829	20736602	286	160410											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123177335	123177335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccttgaacaaattcagatCcttgccgttccaactgtttc	5	12	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123177335	A	A	123177335	3	1	204	1	0	0	0	0	1	0	0	0	3176	855	30	3	1445	3	CDK5RAP2	9	123177335	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	2700506	123177335	18036096	287	160411											
GOLGA2	2801	broad.mit.edu	37	chr9	131025212	131025212	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgggcacacatgcacaccTctatgactacctcatcatgc	7	15	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131025212	A	A	131025212	1	1	204	0	1	0	0	0	0	0	0	0	6616	1566	54	5		5	GOLGA2	9	131025212	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	7847877	131025212	10188219	288	160412											
KIAA0649	9858	broad.mit.edu	37	chr9	138376778	138376778	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccatccaggagtaccTgaaggcaaagagtggagccg	16	9	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138376778	C	C	138376778	3	2	204	1	0	0	0	0	1	0	0	0	8257	1580	55	5	424	5	KIAA0649	9	138376778	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	7351566	138376778	2836653	289	160413											
TUBB8	347688	broad.mit.edu	37	chr10	93315	93315	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagccagtcagcaaagtaActgctgttcttatcttgaat	10	8	3	1	rs9794100		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93315	G	G	93315	2	3	204	1	0	0	0	0	0	0	0	1	16887	40	2	5		5	TUBB8	10	93315	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08		93315	135441432	290	160414											
AKR1E2	83592	broad.mit.edu	37	chr10	4882105	4882105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggatgactgagggaggGcttaatggaggttttgacag	17	4	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4882105	T	T	4882105	1	4	204	0	1	0	0	0	0	0	0	0	474	1218	42	3		3	AKR1E2	10	4882105	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	4788790	4882105	130652642	291	160415											
ITIH2	3698	broad.mit.edu	37	chr10	7774333	7774333	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtcttggagaccctggcCcagatggacgacttgcagga	13	10	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7774333	A	A	7774333	2	1	204	1	0	0	0	0	0	0	0	1	7974	610	22	2		2	ITIH2	10	7774333	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	2892228	7774333	127760414	292	160416											
KIN	22944	broad.mit.edu	37	chr10	7801874	7801874	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttcaatgacgatagtagcTgaaaaagtcttctcattgat	8	6	3	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7801874	A	A	7801874	2	1	204	1	0	0	0	0	0	0	0	1	8386	1567	55	5		5	KIN	10	7801874	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	27541	7801874	127732873	293	160417											
STAM	8027	broad.mit.edu	37	chr10	17747668	17747668	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagttaatgaacgaagatccGatgtattccatgtatgcaaa	8	6	0	2	rs146234865		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17747668	T	T	17747668	2	4	204	1	0	0	0	0	0	0	0	1	15366	1045	37	3		3	STAM	10	17747668	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	9945794	17747668	117787079	294	160418											
NEBL	10529	broad.mit.edu	37	chr10	21074656	21074656	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatacattagaataaagctCaaagggcagggagaaataat	11	4	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21074656	A	A	21074656	1	1	204	0	1	0	0	0	0	0	0	0	10398	841	29	3		3	NEBL	10	21074656	3'UTR	SNP	C	TCGA-73-4659-01A-01D-1265-08	3326988	21074656	114460091	295	160419											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43678551	43678551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacttccggtgactgggaGtcactcctccatgccaggtg	13	12	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43678551	T	T	43678551	1	4	204	0	1	0	0	0	0	0	0	0	3973	1044	36	3		3	CSGALNACT2	10	43678551	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	22603895	43678551	91856196	296	160420											
PARG	8505	broad.mit.edu	37	chr10	51535336	51535336	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaaggagacccagctgCtcaggtggctgcaaatcatt	11	10	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51535336	G	G	51535336	1	3	204	0	1	0	0	0	0	0	0	0	11542	812	28	4		4	PARG	10	51535336	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	7856785	51535336	83999411	297	160421											
PCDH15	65217	broad.mit.edu	37	chr10	55826582	55826582	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaatttcttggcagataagGatcaaacactggagcattgt	9	6	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55826582	A	A	55826582	3	1	204	1	0	0	0	0	1	0	0	0	11605	1174	41	4	5395	4	PCDH15	10	55826582	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	4291246	55826582	79708165	298	160422											
MYPN	84665	broad.mit.edu	37	chr10	69933835	69933835	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtacagtgattccactcaGttacaacagcttcataacca	6	11	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69933835	C	C	69933835	3	2	204	1	0	0	0	0	1	0	0	0	10192	1020	36	4	2024	4	MYPN	10	69933835	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	14107253	69933835	65600912	299	160423											
KIAA1279	26128	broad.mit.edu	37	chr10	70776115	70776115	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaacttagtaaagagatGgttagtcttctcccaacaaa	7	8	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70776115	T	T	70776115	3	4	204	1	0	0	0	0	1	0	0	0	8291	1348	47	2	1835	2	KIAA1279	10	70776115	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	842280	70776115	64758632	300	160424											
LIPA	3988	broad.mit.edu	37	chr10	90986822	90986822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatagagcacacacataCtgagtatgcagtttgatgag	9	6	0	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90986822	A	A	90986822	1	1	204	0	1	0	0	0	0	0	0	0	8892	580	20	3		3	LIPA	10	90986822	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	20210707	90986822	44547925	301	160425											
LGI1	9211	broad.mit.edu	37	chr10	95517964	95517964	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctgaaaagaattgcttaTttcctatgtctcttatctgc	5	11	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95517964	C	C	95517964	2	2	204	1	0	0	0	0	0	0	0	1	8823	1500	52	5		5	LGI1	10	95517964	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	4531142	95517964	40016783	302	160426											
KCNIP2	30819	broad.mit.edu	37	chr10	103599633	103599633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggcgtctaagctccacccCcaggccccggggcggtccgg	14	18	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103599633	A	A	103599633	1	1	204	0	1	0	0	0	0	0	0	0	8110	638	22	2		2	KCNIP2	10	103599633	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	8081669	103599633	31935114	303	160427											
C10orf76	79591	broad.mit.edu	37	chr10	103761774	103761774	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatactttaaaaaggttatCagtagattactggtctgtac	7	6	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103761774	A	A	103761774	2	1	204	1	0	0	0	0	0	0	0	1	1627	813	29	3		3	C10orf76	10	103761774	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	162141	103761774	31772973	304	160428											
C10orf79	80217	broad.mit.edu	37	chr10	105973905	105973905	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtgtgtatgtgtgtgtAtgcatatatatgtatgtata	11	1	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105973905	T	T	105973905	1	4	204	0	1	0	0	0	0	0	0	0	1629	464	16	5		5	C10orf79	10	105973905	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	2212131	105973905	29560842	305	160429											
SORCS3	22986	broad.mit.edu	37	chr10	106907472	106907472	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctacatctcagacacgcGtgggatttacttcactctgg	8	13	4	1	rs147155519		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106907472	T	T	106907472	3	4	204	1	0	0	0	0	1	0	0	0	15046	1145	40	3	1434	3	SORCS3	10	106907472	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	933567	106907472	28627275	306	160430											
SORCS1	114815	broad.mit.edu	37	chr10	108439158	108439158	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaatggactatattggcaGgtgcactgcctgagaaagat	11	7	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108439158	A	A	108439158	1	1	204	0	1	0	0	0	0	0	0	0	15044	1015	35	4		4	SORCS1	10	108439158	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1531686	108439158	27095589	307	160431											
SORCS1	114815	broad.mit.edu	37	chr10	108589279	108589279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctagagtggttagccaacCaagacagaagtcacatcatg	10	9	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108589279	A	A	108589279	1	1	204	0	1	0	0	0	0	0	0	0	15044	609	21	2		2	SORCS1	10	108589279	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	150121	108589279	26945468	308	160432											
HABP2	3026	broad.mit.edu	37	chr10	115345649	115345649	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccacatgattgatgacagTatgatctgtgcaggaaatct	10	7	2	4	rs148362361	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115345649	A	A	115345649	3	1	204	1	0	0	0	0	1	0	0	0	7004	1635	57	5	1516	5	HABP2	10	115345649	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	6756370	115345649	20189098	309	160433											
NRAP	4892	broad.mit.edu	37	chr10	115381717	115381717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttccgctgtcttgtagcCtacgtctgtggctaaatgct	10	10	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115381717	A	A	115381717	3	1	204	1	0	0	0	0	1	0	0	0	10733	681	24	2	2588	2	NRAP	10	115381717	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	36068	115381717	20153030	310	160434											
HTRA1	5654	broad.mit.edu	37	chr10	124266501	124266501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgactttgttgtagtctgcGtgaagggatggaactagacc	13	7	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124266501	T	T	124266501	1	4	204	0	1	0	0	0	0	0	0	0	7523	1160	40	3		3	HTRA1	10	124266501	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	8884784	124266501	11268246	311	160435											
GLRX3	10539	broad.mit.edu	37	chr10	131977798	131977798	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgtatttcacaatgtcGtgctaaataaatgtatgtta	7	4	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131977798	T	T	131977798	1	4	204	0	1	0	0	0	0	0	0	0	6525	1160	40	3		3	GLRX3	10	131977798	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	7711297	131977798	3556949	312	160436											
PPP2R2D	55844	broad.mit.edu	37	chr10	133758920	133758920	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaagggaccatccgcctGtgtgacatgcgctcctcggc	12	14	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133758920	A	A	133758920	2	1	204	1	0	0	0	0	0	0	0	1	12488	1364	48	4		4	PPP2R2D	10	133758920	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	1781122	133758920	1775827	313	160437											
TUBGCP2	10844	broad.mit.edu	37	chr10	135102477	135102477	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgatctctttagccaccgGgcaggtgacgtcatggccac	12	12	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135102477	A	A	135102477	3	1	204	1	0	0	0	0	1	0	0	0	16892	1232	43	4	1336	4	TUBGCP2	10	135102477	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1343557	135102477	432270	314	160438											
HBD	3045	broad.mit.edu	37	chr11	5255339	5255339	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaggcacctagcaccttcTtgccatgagccttcacctta	6	14	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5255339	C	C	5255339	3	2	204	1	0	0	0	0	1	0	0	0	7045	1609	56	5	254	5	HBD	11	5255339	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08		5255339	129751177	315	160439											
FAM160A2	84067	broad.mit.edu	37	chr11	6240169	6240169	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agactctgaggcttcagggtCagccatccctcagccctgcc	10	16	4	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6240169	A	A	6240169	1	1	204	0	1	0	0	0	0	0	0	0	5515	841	29	3		3	FAM160A2	11	6240169	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	984830	6240169	128766347	316	160440											
CCKBR	887	broad.mit.edu	37	chr11	6291976	6291976	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctacttagggcttcgctttGacggcgacagtgacagcgac	12	11	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6291976	A	A	6291976	3	1	204	1	0	0	0	0	1	0	0	0	2909	1290	45	4	768	4	CCKBR	11	6291976	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	51807	6291976	128714540	317	160441											
SOX6	55553	broad.mit.edu	37	chr11	16205507	16205507	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttgtctcgcaatctatcaGaaataaagtttcattaagtt	6	6	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16205507	A	A	16205507	1	1	204	0	1	0	0	0	0	0	0	0	15069	957	33	4		4	SOX6	11	16205507	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	9913531	16205507	118801009	318	160442											
MRGPRX4	117196	broad.mit.edu	37	chr11	18195006	18195006	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccatctacatcctcaaccTggccgcagcagacttcctct	5	18	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18195006	C	C	18195006	3	2	204	1	0	0	0	0	1	0	0	0	9863	1580	55	5	205	5	MRGPRX4	11	18195006	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	1989499	18195006	116811510	319	160443											
SLC6A5	9152	broad.mit.edu	37	chr11	20648475	20648475	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggttagacttcctcctccaGggaatcccagtgtgtgcttt	11	11	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20648475	C	C	20648475	1	2	204	0	1	0	0	0	0	0	0	0	14801	1015	35	4		4	SLC6A5	11	20648475	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	2453469	20648475	114358041	320	160444											
NELL1	4745	broad.mit.edu	37	chr11	21191710	21191710	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatacatgactgggatgTgatctaagcaggtgaattag	11	5	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21191710	C	C	21191710	1	2	204	0	1	0	0	0	0	0	0	0	10428	1711	59	5		5	NELL1	11	21191710	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	543235	21191710	113814806	321	160445											
ANO3	63982	broad.mit.edu	37	chr11	26677674	26677674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttcttttctcccagttGcttgaagggatatgtcaaca	7	8	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26677674	T	T	26677674	3	4	204	1	0	0	0	0	1	0	0	0	698	1319	46	3	2677	3	ANO3	11	26677674	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	5485964	26677674	108328842	322	160446											
SLC5A12	159963	broad.mit.edu	37	chr11	26725452	26725452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcccacaatcatgacaaCcatctgaaatgcatctgtcc	6	13	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26725452	A	A	26725452	3	1	204	1	0	0	0	0	1	0	0	0	14778	507	18	3	1332	3	SLC5A12	11	26725452	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	47778	26725452	108281064	323	160447											
OR4A15	81328	broad.mit.edu	37	chr11	55135855	55135855	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaattgatcaccatgaatCgtcgagtctgtgttcttatg	9	7	3	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55135855	T	T	55135855	3	4	204	1	0	0	0	0	1	0	0	0	11134	884	31	4	498	4	OR4A15	11	55135855	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	28410403	55135855	79870661	324	160448											
SPRYD5	84767	broad.mit.edu	37	chr11	55656573	55656573	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattgattcagatagtgaTactgccttgtgctggttgta	10	5	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55656573	C	C	55656573	1	2	204	0	1	0	0	0	0	0	0	0	15229	1421	49	5		5	SPRYD5	11	55656573	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	520718	55656573	79349943	325	160449											
OR5W2	390148	broad.mit.edu	37	chr11	55681403	55681403	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agactgataggatgatataaCaataagaaatgaaaactcct	7	5	0	5			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55681403	T	T	55681403	3	4	204	1	0	0	0	0	1	0	0	0	11279	478	17	4	278	4	OR5W2	11	55681403	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	24830	55681403	79325113	326	160450											
OR5W2	390148	broad.mit.edu	37	chr11	55681593	55681593	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtcatatgtatcaaagCatctgctattcccaccagat	6	11	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55681593	G	G	55681593	3	3	204	1	0	0	0	0	1	0	0	0	11279	710	25	4	468	4	OR5W2	11	55681593	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	190	55681593	79324923	327	160451											
PRG3	10394	broad.mit.edu	37	chr11	57146087	57146087	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggcctgaggcttggcaCcatcagatgctactttaaca	10	11	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57146087	A	A	57146087	1	1	204	0	1	0	0	0	0	0	0	0	12586	522	18	3		3	PRG3	11	57146087	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1464494	57146087	77860429	328	160452											
MS4A12	54860	broad.mit.edu	37	chr11	60274525	60274525	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccaaatatgtatgaaagCaaccctgtgacaccagcgtc	7	11	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60274525	A	A	60274525	3	1	204	1	0	0	0	0	1	0	0	0	9950	709	25	3	754	3	MS4A12	11	60274525	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	3128438	60274525	74731991	329	160453											
MACROD1	28992	broad.mit.edu	37	chr11	63918756	63918756	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttggtgatgtcgctgcGgagcagggagattttctcat	14	8	1	2	rs143192829		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63918756	A	A	63918756	3	1	204	1	0	0	0	0	1	0	0	0	9233	1116	39	4	537	4	MACROD1	11	63918756	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	3644231	63918756	71087760	330	160454											
CABP2	51475	broad.mit.edu	37	chr11	67287145	67287145	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccatgataattaactaGgagaggacatgggagtgcgt	12	6	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67287145	T	T	67287145	1	4	204	0	1	0	0	0	0	0	0	0	2558	1015	35	2		2	CABP2	11	67287145	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	3368389	67287145	67719371	331	160455											
RNF121	55298	broad.mit.edu	37	chr11	71693869	71693869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtgaagctgcactggtgGaggttcctagtgatctggat	14	7	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71693869	T	T	71693869	3	4	204	1	0	0	0	0	1	0	0	0	13542	1183	41	3	320	3	RNF121	11	71693869	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	4406724	71693869	63312647	332	160456											
FOLH1B	219595	broad.mit.edu	37	chr11	89392728	89392728	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaaatgcccagctggcagGggccaaaggagtcattctct	11	10	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89392728	T	T	89392728	1	4	204	0	1	0	0	0	0	0	0	0	6038	1247	43	2		2	FOLH1B	11	89392728	5'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	17698859	89392728	45613788	333	160457											
CASP1	834	broad.mit.edu	37	chr11	104904801	104904801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggacatgcaatagggacCctgctacagaaatatggccc	11	10	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104904801	A	A	104904801	1	1	204	0	1	0	0	0	0	0	0	0	2694	638	22	2		2	CASP1	11	104904801	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	15512073	104904801	30101715	334	160458											
ELMOD1	55531	broad.mit.edu	37	chr11	107501260	107501260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggatctgttataataccaaGccgggagcttctagaaccat	9	10	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107501260	T	T	107501260	3	4	204	1	0	0	0	0	1	0	0	0	5110	962	34	3	141	3	ELMOD1	11	107501260	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	2596459	107501260	27505256	335	160459											
ATM	472	broad.mit.edu	37	chr11	108160401	108160401	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatgtttataagaagcacAgaattcttaaaatatatcac	4	5	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108160401	T	T	108160401	4	4	204	1	0	0	0	0	0	1	0	0	1113	180	7	5	4419	5	ATM	11	108160401	Nonsense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	659141	108160401	26846115	336	160460											
ABCG4	64137	broad.mit.edu	37	chr11	119024853	119024853	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacatcttggcaggatacaGgtaaggaagagactggggtg	16	5	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119024853	A	A	119024853	3	1	204	1	0	0	0	0	1	0	0	0	70	1014	35	4	362	4	ABCG4	11	119024853	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	10864452	119024853	15981663	337	160461											
ABCG4	64137	broad.mit.edu	37	chr11	119027854	119027854	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctaggaagaacctaggaCttggaatcgacctactagga	12	8	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119027854	A	A	119027854	1	1	204	0	1	0	0	0	0	0	0	0	70	580	20	3		3	ABCG4	11	119027854	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	3001	119027854	15978662	338	160462											
BLID	414899	broad.mit.edu	37	chr11	121986476	121986476	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acataggttctttgttggaaCccaagagcgcctccagtggc	11	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121986476	G	G	121986476	3	3	204	1	0	0	0	0	1	0	0	0	1449	507	18	4	175	4	BLID	11	121986476	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	2958622	121986476	13020040	339	160463											
PRDM10	56980	broad.mit.edu	37	chr11	129817146	129817146	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgtcctcgtcctcatcCtcatcctcttcctctttggc	5	17	5	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129817146	T	T	129817146	2	4	204	1	0	0	0	0	0	0	0	1	12557	680	24	4		4	PRDM10	11	129817146	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	7830670	129817146	5189370	340	160464											
CACNA1C	775	broad.mit.edu	37	chr12	2760996	2760996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgcgtggcccagaacaCagctgacacaaggaggagcc	13	14	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2760996	A	A	2760996	1	1	204	0	1	0	0	0	0	0	0	0	2566	493	17	3		3	CACNA1C	12	2760996	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08		2760996	131090899	341	160465											
KCNA5	3741	broad.mit.edu	37	chr12	5155110	5155110	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtggacttgcggaggtcCctttatgccctctgcctgga	12	12	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5155110	A	A	5155110	2	1	204	1	0	0	0	0	0	0	0	1	8076	610	22	2		2	KCNA5	12	5155110	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	2394114	5155110	128696785	342	160466											
LRRC23	10233	broad.mit.edu	37	chr12	6994304	6994304	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgaaaaagattgttgctAtgctttgtatgatgcaagct	9	6	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6994304	G	G	6994304	1	3	204	0	1	0	0	0	0	0	0	0	9065	464	16	5		5	LRRC23	12	6994304	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	1839194	6994304	126857591	343	160467											
ATF7IP	55729	broad.mit.edu	37	chr12	14634051	14634051	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaactcttcctgcaccacCagctcaggctcccttgcgag	7	17	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14634051	T	T	14634051	3	4	204	1	0	0	0	0	1	0	0	0	1091	594	21	4	3258	4	ATF7IP	12	14634051	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	7639747	14634051	119217844	344	160468											
RERGL	79785	broad.mit.edu	37	chr12	18237698	18237698	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacccacttccgctggaagaTacatcaatgtgttaaatatt	7	9	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18237698	C	C	18237698	1	2	204	0	1	0	0	0	0	0	0	0	13341	1421	49	5		5	RERGL	12	18237698	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3603647	18237698	115614197	345	160469											
PIK3C2G	5288	broad.mit.edu	37	chr12	18691045	18691045	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgatttaacctgacaaaCcatttctcttccttcgaatg	5	11	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18691045	T	T	18691045	1	4	204	0	1	0	0	0	0	0	0	0	12006	522	18	4		4	PIK3C2G	12	18691045	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	453347	18691045	115160850	346	160470											
ABCC9	10060	broad.mit.edu	37	chr12	22063603	22063603	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaataggtttattaattagCtctgtttctttcattaagta	5	5	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22063603	G	G	22063603	1	3	204	0	1	0	0	0	0	0	0	0	59	812	28	4		4	ABCC9	12	22063603	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	3372558	22063603	111788292	347	160471											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	204	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	3334681	25398284	108453611	348	160472											
CCDC91	55297	broad.mit.edu	37	chr12	28544443	28544443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttctgttccatttacttGgtgtattttggagaaaaaat	8	5	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28544443	T	T	28544443	1	4	204	0	1	0	0	0	0	0	0	0	2898	1363	47	2		2	CCDC91	12	28544443	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	3146159	28544443	105307452	349	160473											
ALG10B	144245	broad.mit.edu	37	chr12	38711838	38711838	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatagaaatagattttaaGttgttgtttattggttgctg	9	1	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38711838	A	A	38711838	1	1	204	0	1	0	0	0	0	0	0	0	512	1044	36	4		4	ALG10B	12	38711838	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	10167395	38711838	95140057	350	160474											
KIF21A	55605	broad.mit.edu	37	chr12	39719544	39719544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaaaccatgccctcttgCtaatctattaagagtcaaat	5	9	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39719544	A	A	39719544	1	1	204	0	1	0	0	0	0	0	0	0	8358	812	28	3		3	KIF21A	12	39719544	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1007706	39719544	94132351	351	160475											
ANO6	196527	broad.mit.edu	37	chr12	45823076	45823076	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcagtagataacaatttAcggccaaaatcagaataaga	8	6	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45823076	G	G	45823076	2	3	204	1	0	0	0	0	0	0	0	1	701	388	14	5		5	ANO6	12	45823076	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	6103532	45823076	88028819	352	160476											
KRT84	3890	broad.mit.edu	37	chr12	52778968	52778968	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacagctgtgatagatggGgctgctgggactccaacccc	13	12	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52778968	T	T	52778968	2	4	204	1	0	0	0	0	0	0	0	1	8569	1219	43	2		2	KRT84	12	52778968	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	6955892	52778968	81072927	353	160477											
KRT73	319101	broad.mit.edu	37	chr12	53004362	53004362	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgggaaactttaaggtggaGacttgcagtttcttccagtc	11	8	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53004362	C	C	53004362	1	2	204	0	1	0	0	0	0	0	0	0	8557	957	33	4		4	KRT73	12	53004362	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	225394	53004362	80847533	354	160478											
KRT73	319101	broad.mit.edu	37	chr12	53012212	53012212	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccctttgccccctgctcGgtaggaggatgagctgcccc	13	15	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53012212	A	A	53012212	4	1	204	1	0	0	0	0	0	1	0	0	8557	1124	39	4	1561	4	KRT73	12	53012212	Nonsense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	7850	53012212	80839683	355	160479											
EIF4B	1975	broad.mit.edu	37	chr12	53427638	53427638	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcctcggagtactcctaAggaagatgattcctctgcta	9	10	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53427638	G	G	53427638	3	3	204	1	0	0	0	0	1	0	0	0	5069	72	3	5	1062	5	EIF4B	12	53427638	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	415426	53427638	80424257	356	160480											
NFE2	4778	broad.mit.edu	37	chr12	54686186	54686186	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcctccatcttggtccccCggggcacaaggaagatggtc	13	13	1	1	rs141251053	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54686186	T	T	54686186	3	4	204	1	0	0	0	0	1	0	0	0	10461	652	23	4	31	4	NFE2	12	54686186	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1258548	54686186	79165709	357	160481											
CD63	967	broad.mit.edu	37	chr12	56120552	56120552	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaattctccatctgctgccGgaagttgttattaaactctg	8	9	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56120552	A	A	56120552	3	1	204	1	0	0	0	0	1	0	0	0	3059	1115	39	4	374	4	CD63	12	56120552	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1434366	56120552	77731343	358	160482											
GLI1	2735	broad.mit.edu	37	chr12	57864593	57864593	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctactcaccacagcccccCagcatcactgagaatgctgc	7	17	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57864593	T	T	57864593	2	4	204	1	0	0	0	0	0	0	0	1	6501	581	21	4		4	GLI1	12	57864593	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	1744041	57864593	75987302	359	160483											
XPOT	11260	broad.mit.edu	37	chr12	64814179	64814179	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtcaatagaagttctacggGaagaagcatgtgactgttta	11	5	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64814179	T	T	64814179	4	4	204	1	0	0	0	0	0	1	0	0	17577	1175	41	3	747	3	XPOT	12	64814179	Nonsense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	6949586	64814179	69037716	360	160484											
CNOT2	4848	broad.mit.edu	37	chr12	70739903	70739903	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctttacaaaatgtagaaCatgtttgatgtaagccacag	8	6	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70739903	A	A	70739903	1	1	204	0	1	0	0	0	0	0	0	0	3651	493	17	3		3	CNOT2	12	70739903	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	5925724	70739903	63111992	361	160485											
PTPRR	5801	broad.mit.edu	37	chr12	71065677	71065677	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacccagcgcaggaggaccAgccaccgccgccaggctctg	12	17	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71065677	T	T	71065677	1	4	204	0	1	0	0	0	0	0	0	0	12918	203	7	5		5	PTPRR	12	71065677	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	325774	71065677	62786218	362	160486											
OSBPL8	114882	broad.mit.edu	37	chr12	76779954	76779954	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcatttctaatacctgttcAgcaatataaaaagttttgct	5	7	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76779954	G	G	76779954	2	3	204	1	0	0	0	0	0	0	0	1	11377	175	7	5		5	OSBPL8	12	76779954	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	5714277	76779954	57071941	363	160487											
E2F7	144455	broad.mit.edu	37	chr12	77421759	77421759	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacatctgtatttcttgaagGatttccccactcagaagaaa	6	9	3	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77421759	T	T	77421759	3	4	204	1	0	0	0	0	1	0	0	0	4912	1174	41	3	703	3	E2F7	12	77421759	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	641805	77421759	56430136	364	160488											
NAV3	89795	broad.mit.edu	37	chr12	78444594	78444594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaacagaagttaatggaaGgaccatacccaacttgacaa	8	9	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78444594	T	T	78444594	3	4	204	1	0	0	0	0	1	0	0	0	10279	1000	35	2	2225	2	NAV3	12	78444594	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1022835	78444594	55407301	365	160489											
TMPO	7112	broad.mit.edu	37	chr12	98921642	98921642	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actttaattcatatggaaatGattactggactttgtttaca	6	5	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98921642	T	T	98921642	1	4	204	0	1	0	0	0	0	0	0	0	16360	1305	45	3		3	TMPO	12	98921642	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	20477048	98921642	34930253	366	160490											
DRAM1	55332	broad.mit.edu	37	chr12	102301835	102301836	+	Intron	INS	-	G	G													tttcttttggtagtcaaacaINSgccacattttccaagaagtg							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102301836	G	G	102301835	6	5	204	0	1	1	1	0	0	0	0	0	4793	203	7	0		0	DRAM1	12	102301835	Intron	INS	-	TCGA-73-4659-01A-01D-1265-08	3380193	102301835	31550060	367	160491											
STAB2	55576	broad.mit.edu	37	chr12	104129215	104129215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaaagctccttcgggccGtcccttcttcggcccaaatt	9	14	1	0	rs147189765	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104129215	T	T	104129215	1	4	204	0	1	0	0	0	0	0	0	0	15356	1160	40	3		3	STAB2	12	104129215	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1827380	104129215	29722680	368	160492											
STAB2	55576	broad.mit.edu	37	chr12	104129313	104129313	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccactgcctggaagaccctGcaaggttcagagctgagtgt	12	11	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104129313	A	A	104129313	2	1	204	1	0	0	0	0	0	0	0	1	15356	1306	46	4		4	STAB2	12	104129313	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	98	104129313	29722582	369	160493											
CORO1C	23603	broad.mit.edu	37	chr12	109048218	109048218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataataataatacatatatgTgtatgtatacatttttttaa	3	2	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109048218	C	C	109048218	1	2	204	0	1	0	0	0	0	0	0	0	3787	1711	59	5		5	CORO1C	12	109048218	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	4918905	109048218	24803677	370	160494											
ACACB	32	broad.mit.edu	37	chr12	109679096	109679096	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctggaaatgtaaggctgGcccgcgccgtgggggtctaa	16	9	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109679096	T	T	109679096	1	4	204	0	1	0	0	0	0	0	0	0	107	1218	42	3		3	ACACB	12	109679096	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	630878	109679096	24172799	371	160495											
UBE3B	89910	broad.mit.edu	37	chr12	109937520	109937520	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagtttgctcacccagacGctgtgctactgtcggaagta	12	10	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109937520	T	T	109937520	2	4	204	1	0	0	0	0	0	0	0	1	17006	1074	38	3		3	UBE3B	12	109937520	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	258424	109937520	23914375	372	160496											
TBX5	6910	broad.mit.edu	37	chr12	114841688	114841688	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgcgccaggccaaagccctCgtctgcgtcggccatggtgc	14	15	1	0	rs145365553		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114841688	A	A	114841688	4	1	204	1	0	0	0	0	0	1	0	0	15783	893	31	3	1639	3	TBX5	12	114841688	Nonsense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	4904168	114841688	19010207	373	160497											
TBX3	6926	broad.mit.edu	37	chr12	115117165	115117165	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctcgaggtgtcattgtccTttccccccaaatgctccaca	6	16	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115117165	A	A	115117165	1	1	204	0	1	0	0	0	0	0	0	0	15781	1624	56	5		5	TBX3	12	115117165	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	275477	115117165	18734730	374	160498											
TBX3	6926	broad.mit.edu	37	chr12	115120466	115120466	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatttcctgccaccgggGcagggcctggaagtctgtgc	14	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115120466	A	A	115120466	1	1	204	0	1	0	0	0	0	0	0	0	15781	1218	42	4		4	TBX3	12	115120466	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	3301	115120466	18731429	375	160499											
MED13L	23389	broad.mit.edu	37	chr12	116421007	116421007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatgttcccttgcgttctatCcgcagaaatgcccccagtgc	8	14	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116421007	A	A	116421007	3	1	204	1	0	0	0	0	1	0	0	0	9524	855	30	3	1806	3	MED13L	12	116421007	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1300541	116421007	17430888	376	160500											
NOS1	4842	broad.mit.edu	37	chr12	117697013	117697013	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaggtgggagagacaaaAagtgatgggggaagggcaag	19	2	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117697013	C	C	117697013	1	2	204	0	1	0	0	0	0	0	0	0	10636	29	1	5		5	NOS1	12	117697013	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	1276006	117697013	16154882	377	160501											
SBNO1	55206	broad.mit.edu	37	chr12	123782543	123782543	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctacaatccgttgcccatCttccgttcttagccgcacga	6	16	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123782543	A	A	123782543	3	1	204	1	0	0	0	0	1	0	0	0	13974	913	32	3	168	3	SBNO1	12	123782543	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	6085530	123782543	10069352	378	160502											
MMP17	4326	broad.mit.edu	37	chr12	132325241	132325241	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgaggtggcgggcagcgcCgccgacatccagatcgactt	14	14	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132325241	A	A	132325241	2	1	204	1	0	0	0	0	0	0	0	1	9749	639	23	1		1	MMP17	12	132325241	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	8542698	132325241	1526654	379	160503											
FAM123A	219287	broad.mit.edu	37	chr13	25744101	25744101	+	Frame_Shift_Del	DEL	C	-	-													atagagatcatagagcgcgtCcccgctgtagctatcccggg					rs147191374		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25744101	-	-	25744101	7	5	204	1	0	1	0	1	0	0	0	0	5468	855	30	0	362	0	FAM123A	13	25744101	Frame_Shift_Del	DEL	C	TCGA-73-4659-01A-01D-1265-08		25744101	89425777	380	160504											
USP12	219333	broad.mit.edu	37	chr13	27664334	27664334	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctttgattttttcaaataCtagtaaaccacagttcccaa	4	9	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27664334	A	A	27664334	1	1	204	0	1	0	0	0	0	0	0	0	17169	580	20	3		3	USP12	13	27664334	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1920233	27664334	87505544	381	160505											
LNX2	222484	broad.mit.edu	37	chr13	28143301	28143301	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtctgcttctggagataAggtacctgcaggatctagta	11	8	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28143301	G	G	28143301	2	3	204	1	0	0	0	0	0	0	0	1	8940	69	3	5		5	LNX2	13	28143301	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	478967	28143301	87026577	382	160506											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37679478	37679478	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcccaccggcccgcaagGctgaggatgagggctgctgg	19	12	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37679478	A	A	37679478	1	1	204	0	1	0	0	0	0	0	0	0	3985	1218	42	4		4	CSNK1A1L	13	37679478	5'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08	9536177	37679478	77490400	383	160507											
FREM2	341640	broad.mit.edu	37	chr13	39435642	39435642	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattgcgctacacaggccctGaggatgcagactacacaaac	9	12	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39435642	T	T	39435642	4	4	204	1	0	0	0	0	0	1	0	0	6105	1291	45	3	7652	3	FREM2	13	39435642	Nonsense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1756164	39435642	75734236	384	160508											
KIAA0564	23078	broad.mit.edu	37	chr13	42460986	42460986	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaaagtaatacagaaacaTattaaattaattaacaagaa	3	5	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42460986	G	G	42460986	1	3	204	0	1	0	0	0	0	0	0	0	8255	1421	49	5		5	KIAA0564	13	42460986	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3025344	42460986	72708892	385	160509											
COL4A1	1282	broad.mit.edu	37	chr13	110862279	110862279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattttcaaacctcaatatAgttgttttttaaatgattgc	4	5	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110862279	T	T	110862279	1	4	204	0	1	0	0	0	0	0	0	0	3721	435	15	5		5	COL4A1	13	110862279	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	68401293	110862279	4307599	386	160510											
OR11H6	122748	broad.mit.edu	37	chr14	20692480	20692480	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacccaggcccattgtttgcActggcctgcatctctgctcc	9	16	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20692480	T	T	20692480	2	4	204	1	0	0	0	0	0	0	0	1	11023	146	6	5		5	OR11H6	14	20692480	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08		20692480	86657060	387	160511											
TEP1	7011	broad.mit.edu	37	chr14	20857777	20857777	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcacccttacaggtattgTacccttcttaggaggatacc	8	11	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20857777	A	A	20857777	2	1	204	1	0	0	0	0	0	0	0	1	15881	1625	57	5		5	TEP1	14	20857777	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	165297	20857777	86491763	388	160512											
OR5AU1	390445	broad.mit.edu	37	chr14	21623954	21623954	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggaacaccacgaagagCagcctctggagctgggggtc	14	13	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21623954	T	T	21623954	2	4	204	1	0	0	0	0	0	0	0	1	11241	697	25	4		4	OR5AU1	14	21623954	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	766177	21623954	85725586	389	160513											
CHD8	57680	broad.mit.edu	37	chr14	21878145	21878145	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccaggtagtaaataacGggctaggagagaagaaacca	11	7	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21878145	A	A	21878145	2	1	204	1	0	0	0	0	0	0	0	1	3362	1103	39	4		4	CHD8	14	21878145	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	254191	21878145	85471395	390	160514											
CHD8	57680	broad.mit.edu	37	chr14	21896230	21896230	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgggctctcgcaatggcctCtgctacaatccgatttgctt	9	13	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21896230	T	T	21896230	3	4	204	1	0	0	0	0	1	0	0	0	3362	922	32	4	6486	4	CHD8	14	21896230	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	18085	21896230	85453310	391	160515											
MYH6	4624	broad.mit.edu	37	chr14	23855623	23855623	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcattgaggtctccttcCatcttcttcttcaccctcag	4	15	7	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23855623	A	A	23855623	3	1	204	1	0	0	0	0	1	0	0	0	10132	594	21	2	987	2	MYH6	14	23855623	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1959393	23855623	83493917	392	160516											
REC8	9985	broad.mit.edu	37	chr14	24644669	24644669	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cataaaaggagattaccgtgCattgttgaagaaggctgtga	12	5	0	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24644669	G	G	24644669	1	3	204	0	1	0	0	0	0	0	0	0	13307	725	25	4		4	REC8	14	24644669	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	789046	24644669	82704871	393	160517											
PRKD1	5587	broad.mit.edu	37	chr14	30133002	30133002	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttgagagccttctccgcCtcacaccgctgcaattgttg	9	14	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30133002	A	A	30133002	3	1	204	1	0	0	0	0	1	0	0	0	12624	681	24	2	2199	2	PRKD1	14	30133002	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	5488333	30133002	77216538	394	160518											
RALGAPA1	253959	broad.mit.edu	37	chr14	36207715	36207715	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaaaatagccataaagtgatCcacctgcaaaactgcctggg	8	10	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36207715	A	A	36207715	1	1	204	0	1	0	0	0	0	0	0	0	13121	870	30	3		3	RALGAPA1	14	36207715	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	6074713	36207715	71141825	395	160519											
NIN	51199	broad.mit.edu	37	chr14	51228584	51228584	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgttcaatgaccagctctGcctcaatgctcatattcaat	5	12	6	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51228584	C	C	51228584	3	2	204	1	0	0	0	0	1	0	0	0	10512	1319	46	4	4793	4	NIN	14	51228584	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	15020869	51228584	56120956	396	160520											
FAM71D	161142	broad.mit.edu	37	chr14	67675040	67675040	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgacttttgaaggtaaaaGatattttcaaactaccttga	6	6	1	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67675040	C	C	67675040	3	2	204	1	0	0	0	0	1	0	0	0	5661	942	33	4	1048	4	FAM71D	14	67675040	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	16446456	67675040	39674500	397	160521											
ZFYVE26	23503	broad.mit.edu	37	chr14	68250146	68250146	+	Frame_Shift_Del	DEL	C	-	-													gaggaggtctgctggctttgCcgggatgagcaaagagcaag							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68250146	-	-	68250146	7	5	204	1	0	1	0	1	0	0	0	0	17794	726	26	0	3984	0	ZFYVE26	14	68250146	Frame_Shift_Del	DEL	C	TCGA-73-4659-01A-01D-1265-08	575106	68250146	39099394	398	160522											
ACTN1	87	broad.mit.edu	37	chr14	69347566	69347566	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgttgtcgaagatgagCgcctcctggatgagctggtg	15	8	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69347566	A	A	69347566	2	1	204	1	0	0	0	0	0	0	0	1	204	755	27	3		3	ACTN1	14	69347566	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	1097420	69347566	38001974	399	160523											
ESRRB	2103	broad.mit.edu	37	chr14	76948374	76948374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aataggtgtgcgccttgatcGagtgcgtggaggccgtcaga	16	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76948374	T	T	76948374	3	4	204	1	0	0	0	0	1	0	0	0	5303	1058	37	3	540	3	ESRRB	14	76948374	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	7600808	76948374	30401166	400	160524											
C14orf49	161176	broad.mit.edu	37	chr14	95910832	95910832	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacccctcacctgcaaccttGagagctgggcctgttttcca	9	15	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95910832	C	C	95910832	4	2	204	1	0	0	0	0	0	1	0	0	1789	1294	45	4	1197	4	C14orf49	14	95910832	Nonsense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	18962458	95910832	11438708	401	160525											
DLK1	8788	broad.mit.edu	37	chr14	101200399	101200399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccccttagtcaggccaGggaccttctgccctgagccc	10	18	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200399	T	T	101200399	1	4	204	0	1	0	0	0	0	0	0	0	4604	1015	35	2		2	DLK1	14	101200399	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	5289567	101200399	6149141	402	160526											
RAGE	5891	broad.mit.edu	37	chr14	102718364	102718364	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaataggcaaatacggtTactgatggtacatatcctct	9	7	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102718364	C	C	102718364	1	2	204	0	1	0	0	0	0	0	0	0	13114	1769	61	5		5	RAGE	14	102718364	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	1517965	102718364	4631176	403	160527											
PLD4	122618	broad.mit.edu	37	chr14	105395257	105395257	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatcggggtcaacgactcGtcttcccagctggtgcgccc	12	15	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105395257	A	A	105395257	2	1	204	1	0	0	0	0	0	0	0	1	12143	1132	40	4		4	PLD4	14	105395257	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	2676893	105395257	1954283	404	160528											
OR4N4	283694	broad.mit.edu	37	chr15	22332478	22332478	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcatcttcttgggagctgCagctatttctcttattacta	6	9	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22332478	A	A	22332478	1	1	204	0	1	0	0	0	0	0	0	0	11172	725	25	3		3	OR4N4	15	22332478	5'UTR	SNP	C	TCGA-73-4659-01A-01D-1265-08		22332478	80198914	405	160529											
TUBGCP5	114791	broad.mit.edu	37	chr15	22848827	22848827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggaaatgaatttgaatGtttacagaagaccacctttg	10	5	0	5			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22848827	T	T	22848827	1	4	204	0	1	0	0	0	0	0	0	0	16895	1392	48	3		3	TUBGCP5	15	22848827	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	516349	22848827	79682565	406	160530											
HERC2	8924	broad.mit.edu	37	chr15	28377989	28377989	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacacggactgcaaaaaagtCaccaaatataatggaaacac	6	10	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28377989	A	A	28377989	1	1	204	0	1	0	0	0	0	0	0	0	7125	841	29	3		3	HERC2	15	28377989	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	5529162	28377989	74153403	407	160531											
HERC2	8924	broad.mit.edu	37	chr15	28456198	28456198	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggctgagacaggatctgcCgcagtttatcctggtgggag	15	9	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28456198	G	G	28456198	3	3	204	1	0	0	0	0	1	0	0	0	7125	652	23	4	7685	4	HERC2	15	28456198	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	78209	28456198	74075194	408	160532											
GJD2	57369	broad.mit.edu	37	chr15	35045111	35045111	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcagtgcgtagacctgaTgggtgtggagtcagctcctt	15	8	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35045111	G	G	35045111	2	3	204	1	0	0	0	0	0	0	0	1	6481	1451	51	5		5	GJD2	15	35045111	Silent	SNP	T	TCGA-73-4659-01A-01D-1265-08	6588913	35045111	67486281	409	160533											
CCPG1	9236	broad.mit.edu	37	chr15	55734919	55734919	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaacactctgaacattacTggaaacaaaaaatttctttc	3	9	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55734919	A	A	55734919	1	1	204	0	1	0	0	0	0	0	0	0	2968	1595	55	5		5	CCPG1	15	55734919	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	20689808	55734919	46796473	410	160534											
ZNF280D	54816	broad.mit.edu	37	chr15	56923982	56923982	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttacattatctgatgctaatCgcaaatccttaatattcttt	3	8	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56923982	G	G	56923982	3	3	204	1	0	0	0	0	1	0	0	0	17943	884	31	4	289	4	ZNF280D	15	56923982	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	1189063	56923982	45607410	411	160535											
CLPX	10845	broad.mit.edu	37	chr15	65456290	65456300	+	Intron	DEL	AGAAAGTGAGG	-	-													atataaaaaacattttaagaAgaaagtgaggagttacaaat							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65456300	-	-	65456290	6	5	204	0	1	1	0	1	0	0	0	0	3588	87	3	0		0	CLPX	15	65456290	Intron	DEL	AGAAAGTGAGG	TCGA-73-4659-01A-01D-1265-08	8532308	65456290	37075102	412	160536											
ITGA11	22801	broad.mit.edu	37	chr15	68649486	68649486	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttgttctacttttttttTaccgtgcaaattcaatgcca	4	8	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68649486	A	A	68649486	1	1	204	0	1	0	0	0	0	0	0	0	7944	1769	61	5		5	ITGA11	15	68649486	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3193196	68649486	33881906	413	160537											
NOX5	79400	broad.mit.edu	37	chr15	69327818	69327818	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtagtggggctgtccctcgTgcacaccgtggctcacactg	14	13	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69327818	A	A	69327818	3	1	204	1	0	0	0	0	1	0	0	0	10654	1696	59	5	1035	5	NOX5	15	69327818	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	678332	69327818	33203574	414	160538											
SNUPN	10073	broad.mit.edu	37	chr15	75909934	75909934	+	Intron	DEL	T	-	-													taaggacatatcttttcttcTttttttttttttagacaggg							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75909934	-	-	75909934	6	5	204	0	1	1	0	1	0	0	0	0	14991	1624	56	0		0	SNUPN	15	75909934	Intron	DEL	T	TCGA-73-4659-01A-01D-1265-08	6582116	75909934	26621458	415	160539											
HOMER2	9455	broad.mit.edu	37	chr15	83561340	83561340	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatgttatacagacattaTaacaataacttatgtgttaa	4	4	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83561340	A	A	83561340	1	1	204	0	1	0	0	0	0	0	0	0	7346	1421	49	5		5	HOMER2	15	83561340	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	7651406	83561340	18970052	416	160540											
NTRK3	4916	broad.mit.edu	37	chr15	88679638	88679638	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcaaattttccctcttcttCaagactacagtgtgatcact	5	12	4	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88679638	A	A	88679638	1	1	204	0	1	0	0	0	0	0	0	0	10803	841	29	3		3	NTRK3	15	88679638	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	5118298	88679638	13851754	417	160541											
RHCG	51458	broad.mit.edu	37	chr15	90020439	90020439	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaaggaatggacaagccTggggtggagacagggggcag	19	6	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90020439	A	A	90020439	5	1	204	1	0	0	0	0	0	0	1	0	13435	1594	55	5	340	5	RHCG	15	90020439	Splice_Site	SNP	T	TCGA-73-4659-01A-01D-1265-08	1340801	90020439	12510953	418	160542											
SV2B	9899	broad.mit.edu	37	chr15	91835612	91835612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacagagcaacagccttcGgcattctcaatggattatgc	8	10	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91835612	T	T	91835612	3	4	204	1	0	0	0	0	1	0	0	0	15536	1116	39	1	1928	1	SV2B	15	91835612	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	1815173	91835612	10695780	419	160543											
LRRK1	79705	broad.mit.edu	37	chr15	101523840	101523840	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcccacggatgacaacccAgccgtggtggcagcgtattt	13	12	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101523840	T	T	101523840	2	4	204	1	0	0	0	0	0	0	0	1	9119	175	7	5		5	LRRK1	15	101523840	Silent	SNP	A	TCGA-73-4659-01A-01D-1265-08	9688228	101523840	1007552	420	160544											
LRRK1	79705	broad.mit.edu	37	chr15	101567452	101567453	+	Intron	INS	-	T	T													atgatgagtaaagacgggtcINStttttgctcacagtgagatt							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101567453	T	T	101567452	6	5	204	0	1	1	1	0	0	0	0	0	9119	928	32	0		0	LRRK1	15	101567452	Intron	INS	-	TCGA-73-4659-01A-01D-1265-08	43612	101567452	963940	421	160545											
TPSD1	23430	broad.mit.edu	37	chr16	1308402	1308402	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggcgggcgtggtcagctggGaggagagctgtgcccagccc	19	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1308402	T	T	1308402	1	4	204	0	1	0	0	0	0	0	0	0	16549	1189	41	3		3	TPSD1	16	1308402	3'UTR	SNP	G	TCGA-73-4659-01A-01D-1265-08		1308402	89046351	422	160546											
PDXDC1	23042	broad.mit.edu	37	chr16	15225424	15225424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggctcctcgttgagcaCgcgggagcgcgtgaggatgc	18	11	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15225424	A	A	15225424	1	1	204	0	1	0	0	0	0	0	0	0	11790	551	19	3		3	PDXDC1	16	15225424	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	13917022	15225424	75129329	423	160547											
NDE1	54820	broad.mit.edu	37	chr16	15784983	15784983	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggacttgaattcctgaAtcctttttctggcacagatt	8	9	1	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15784983	G	G	15784983	1	3	204	0	1	0	0	0	0	0	0	0	10338	116	4	5		5	NDE1	16	15784983	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	559559	15784983	74569770	424	160548											
GTF3C1	2975	broad.mit.edu	37	chr16	27476052	27476052	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgtcggcgtcttctctgtCtttcagccgcacggagtgca	12	12	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27476052	G	G	27476052	3	3	204	1	0	0	0	0	1	0	0	0	6937	913	32	4	884	4	GTF3C1	16	27476052	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	11691069	27476052	62878701	425	160549											
KIAA0556	23247	broad.mit.edu	37	chr16	27689406	27689406	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagtggtcctttgagttcCtctttgggtagagtgtctca	11	9	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27689406	T	T	27689406	1	4	204	0	1	0	0	0	0	0	0	0	8253	696	24	4		4	KIAA0556	16	27689406	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	213354	27689406	62665347	426	160550											
NOD2	64127	broad.mit.edu	37	chr16	50746260	50746260	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtggagcagctgctgccttGccttggtgtctgcaaggctc	14	12	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50746260	C	C	50746260	3	2	204	1	0	0	0	0	1	0	0	0	10612	1319	46	4	2452	4	NOD2	16	50746260	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	23056854	50746260	39608493	427	160551											
SLC6A2	6530	broad.mit.edu	37	chr16	55719131	55719131	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggcagctcttgctctgtCtgatggtcgtcgtcatcgtc	12	11	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55719131	A	A	55719131	3	1	204	1	0	0	0	0	1	0	0	0	14797	912	32	3	826	3	SLC6A2	16	55719131	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	4972871	55719131	34635622	428	160552											
CES1	1066	broad.mit.edu	37	chr16	55857662	55857662	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcactcagaagatgtctTgtttggtgacctacctgttg	12	8	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55857662	C	C	55857662	1	2	204	0	1	0	0	0	0	0	0	0	3299	1827	63	5		5	CES1	16	55857662	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	138531	55857662	34497091	429	160553											
GNAO1	2775	broad.mit.edu	37	chr16	56374626	56374626	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcctggtggtctccgtcccGgtggtgcatccagccacatt	12	14	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56374626	C	C	56374626	1	2	204	0	1	0	0	0	0	0	0	0	6572	1131	39	4		4	GNAO1	16	56374626	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	516964	56374626	33980127	430	160554											
GPR114	221188	broad.mit.edu	37	chr16	57602080	57602080	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcagacttccaggtggGcagggtattgatccccttta	10	12	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57602080	A	A	57602080	1	1	204	0	1	0	0	0	0	0	0	0	6696	1218	42	4		4	GPR114	16	57602080	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1227454	57602080	32752673	431	160555											
ZNF23	7571	broad.mit.edu	37	chr16	71482826	71482826	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attgaagccttttccacactCtttacactgatagggctttt	6	10	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71482826	T	T	71482826	3	4	204	1	0	0	0	0	1	0	0	0	17909	922	32	4	833	4	ZNF23	16	71482826	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	13880746	71482826	18871927	432	160556											
PKD1L2	114780	broad.mit.edu	37	chr16	81157445	81157445	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggggctccatgtcccgGcagccccttgactgaggcca	13	15	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81157445	T	T	81157445	1	4	204	0	1	0	0	0	0	0	0	0	12060	1218	42	3		3	PKD1L2	16	81157445	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	9674619	81157445	9197308	433	160557											
JPH3	57338	broad.mit.edu	37	chr16	87723191	87723191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccctggcccggggaccgCggcctcgctgtggaatgtgc	17	15	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87723191	A	A	87723191	1	1	204	0	1	0	0	0	0	0	0	0	8032	783	27	3		3	JPH3	16	87723191	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	6565746	87723191	2631562	434	160558											
SLC7A5	8140	broad.mit.edu	37	chr16	87872288	87872288	+	Intron	DEL	C	-	-													tggccatgaggcctgggcctCcctcacctgtggtgggtcgg							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87872288	-	-	87872288	6	5	204	0	1	1	0	1	0	0	0	0	14814	870	30	0		0	SLC7A5	16	87872288	Intron	DEL	C	TCGA-73-4659-01A-01D-1265-08	149097	87872288	2482465	435	160559											
MINK1	50488	broad.mit.edu	37	chr17	4787674	4787674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagctggtgatggagttctGtggtgctggttcagtgactg	16	6	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4787674	T	T	4787674	3	4	204	1	0	0	0	0	1	0	0	0	9680	1377	48	3	80	3	MINK1	17	4787674	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08		4787674	76407536	436	160560											
NUP88	4927	broad.mit.edu	37	chr17	5291290	5291290	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caactgaaaataaatagactCaagtcacaggtgctttttaa	6	7	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5291290	G	G	5291290	1	3	204	0	1	0	0	0	0	0	0	0	10866	841	29	4		4	NUP88	17	5291290	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	503616	5291290	75903920	437	160561											
WSCD1	23302	broad.mit.edu	37	chr17	6023481	6023481	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgctcagccaccaaaggGtcctcctccatggggaatgc	10	15	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6023481	T	T	6023481	1	4	204	0	1	0	0	0	0	0	0	0	17533	1276	44	3		3	WSCD1	17	6023481	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	732191	6023481	75171729	438	160562											
MYH13	8735	broad.mit.edu	37	chr17	10265549	10265549	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcttgtacaccggcagccActtgtaggggttgacggtga	16	9	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10265549	T	T	10265549	3	4	204	1	0	0	0	0	1	0	0	0	10126	159	6	5	5573	5	MYH13	17	10265549	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	4242068	10265549	70929661	439	160563											
MYH1	4619	broad.mit.edu	37	chr17	10408429	10408429	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagattataataagaagcaGaattaaaacacctaagatga	6	5	1	5			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10408429	T	T	10408429	1	4	204	0	1	0	0	0	0	0	0	0	10123	957	33	3		3	MYH1	17	10408429	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	142880	10408429	70786781	440	160564											
DNAH9	1770	broad.mit.edu	37	chr17	11583119	11583119	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaagagtgagagcggcttActcaagaaagttgaaaaagg	13	4	1	5			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11583119	T	T	11583119	3	4	204	1	0	0	0	0	1	0	0	0	4648	388	14	5	3469	5	DNAH9	17	11583119	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	1174690	11583119	69612091	441	160565											
USP22	23326	broad.mit.edu	37	chr17	20922486	20922486	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggttcccaagttgaaaacTtctctccaacgcctaagcag	7	12	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20922486	C	C	20922486	3	2	204	1	0	0	0	0	1	0	0	0	17180	1609	56	5	1186	5	USP22	17	20922486	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	9339367	20922486	60272724	442	160566											
RHOT1	55288	broad.mit.edu	37	chr17	30477929	30477929	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatgttctgggggaggtgGgcacattcttcttggatgga	18	5	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30477929	T	T	30477929	1	4	204	0	1	0	0	0	0	0	0	0	13452	1247	43	2		2	RHOT1	17	30477929	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	9555443	30477929	50717281	443	160567											
SLFN12L	342615	broad.mit.edu	37	chr17	33818340	33818340	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtcatgcaatgttgtccCttcctactttcttcctccag	5	13	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33818340	T	T	33818340	1	4	204	0	1	0	0	0	0	0	0	0	14849	696	24	4		4	SLFN12L	17	33818340	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	3340411	33818340	47376870	444	160568											
LHX1	3975	broad.mit.edu	37	chr17	35297911	35297911	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttccctcttagccacCacgggcagtgaccccagttt	8	16	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35297911	G	G	35297911	2	3	204	1	0	0	0	0	0	0	0	1	8842	581	21	4		4	LHX1	17	35297911	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	1479571	35297911	45897299	445	160569											
KRT38	8687	broad.mit.edu	37	chr17	39595264	39595264	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagggcattcgggagagcCcacctgcacaccttcctcat	10	15	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39595264	A	A	39595264	1	1	204	0	1	0	0	0	0	0	0	0	8546	638	22	2		2	KRT38	17	39595264	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	4297353	39595264	41599946	446	160570											
HAP1	9001	broad.mit.edu	37	chr17	39880924	39880924	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggctggggcaggtgagCactcggggagcttatccacc	16	12	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39880924	A	A	39880924	1	1	204	0	1	0	0	0	0	0	0	0	7019	725	25	3		3	HAP1	17	39880924	3'UTR	SNP	C	TCGA-73-4659-01A-01D-1265-08	285660	39880924	41314286	447	160571											
TUBG2	27175	broad.mit.edu	37	chr17	40817597	40817597	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgggcccccactcccGgactcctttggactggaagc	13	15	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40817597	A	A	40817597	1	1	204	0	1	0	0	0	0	0	0	0	16891	1131	39	4		4	TUBG2	17	40817597	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	936673	40817597	40377613	448	160572											
MPP3	4356	broad.mit.edu	37	chr17	41903223	41903223	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggcctaggagacacagGgactgaccatcagcacagga	12	12	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41903223	A	A	41903223	1	1	204	0	1	0	0	0	0	0	0	0	9829	1247	43	4		4	MPP3	17	41903223	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1085626	41903223	39291987	449	160573											
GJC1	10052	broad.mit.edu	37	chr17	42882388	42882388	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccggatcctcaagttccctCcttttactgtttagtgagtc	7	13	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42882388	A	A	42882388	3	1	204	1	0	0	0	0	1	0	0	0	6478	854	30	3	396	3	GJC1	17	42882388	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	979165	42882388	38312822	450	160574											
ANKFN1	162282	broad.mit.edu	37	chr17	54517752	54517752	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcatcatggataatctgcaGactctgagatgcacaatcac	7	10	5	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54517752	T	T	54517752	3	4	204	1	0	0	0	0	1	0	0	0	625	933	33	3	1014	3	ANKFN1	17	54517752	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	11635364	54517752	26677458	451	160575											
NUP85	79902	broad.mit.edu	37	chr17	73222095	73222095	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagcagccctgcctgcccCgagtctctgcttccgtcctc	8	19	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73222095	T	T	73222095	1	4	204	0	1	0	0	0	0	0	0	0	10865	667	23	4		4	NUP85	17	73222095	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	18704343	73222095	7973115	452	160576											
ACOX1	51	broad.mit.edu	37	chr17	73952084	73952084	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgttcatacatttttaaaGggtagaaaaaagaagaaaga	8	3	1	4			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73952084	A	A	73952084	1	1	204	0	1	0	0	0	0	0	0	0	158	1015	35	4		4	ACOX1	17	73952084	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	729989	73952084	7243126	453	160577											
CARD14	79092	broad.mit.edu	37	chr17	78163493	78163493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcttctcgggattctgcTtgcctagggcaggcctctgg	12	13	4	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78163493	A	A	78163493	1	1	204	0	1	0	0	0	0	0	0	0	2672	1624	56	5		5	CARD14	17	78163493	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	4211409	78163493	3031717	454	160578											
RNF213	57674	broad.mit.edu	37	chr17	78335755	78335755	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggggactggatgcagacaCggagacgtttcctcagctgc	14	10	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78335755	T	T	78335755	1	4	204	0	1	0	0	0	0	0	0	0	13588	551	19	4		4	RNF213	17	78335755	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	172262	78335755	2859455	455	160579											
RAB40B	10966	broad.mit.edu	37	chr17	80622412	80622412	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcccgtccagcaggatggTggtcgtcttgtagtcgatgc	14	12	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80622412	A	A	80622412	3	1	204	1	0	0	0	0	1	0	0	0	13049	1696	59	5	693	5	RAB40B	17	80622412	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	2286657	80622412	572798	456	160580											
TBCD	6904	broad.mit.edu	37	chr17	80828189	80828189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggacgccgcctgctacGtgtgctgggccttcgcgcgt	15	14	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80828189	T	T	80828189	3	4	204	1	0	0	0	0	1	0	0	0	15755	1145	40	3	1462	3	TBCD	17	80828189	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	205777	80828189	367021	457	160581											
CLUL1	27098	broad.mit.edu	37	chr18	627315	627315	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtttgaccagacttttcaAtcacatttcatatcagatac	5	9	4	3	rs115407065	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	627315	T	T	627315	3	4	204	1	0	0	0	0	1	0	0	0	3602	98	4	5	656	5	CLUL1	18	627315	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08		627315	77449933	458	160582											
FAM38B	63895	broad.mit.edu	37	chr18	10680380	10680380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagcaccctgtatgtgcaCaaatgcacatgcataaatag	7	10	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10680380	A	A	10680380	1	1	204	0	1	0	0	0	0	0	0	0	5606	493	17	3		3	FAM38B	18	10680380	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	10053065	10680380	67396868	459	160583											
FAM38B	63895	broad.mit.edu	37	chr18	10691435	10691435	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatactcttctgaaacaaaAggatggcagtgtcaaattaa	7	6	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10691435	T	T	10691435	1	4	204	0	1	0	0	0	0	0	0	0	5606	87	3	5		5	FAM38B	18	10691435	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08	11055	10691435	67385813	460	160584											
RNMT	8731	broad.mit.edu	37	chr18	13742661	13742661	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctaaatgagtaagaagtCattaatctgttcactctttt	6	6	4	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13742661	T	T	13742661	1	4	204	0	1	0	0	0	0	0	0	0	13617	841	29	4		4	RNMT	18	13742661	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	3051226	13742661	64334587	461	160585											
ASXL3	80816	broad.mit.edu	37	chr18	31319575	31319575	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtgtcttccatgcttcTcacctctgagaccacttttg	6	13	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31319575	C	C	31319575	3	2	204	1	0	0	0	0	1	0	0	0	1072	1551	54	5	2249	5	ASXL3	18	31319575	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	17576914	31319575	46757673	462	160586											
KIAA1632	57724	broad.mit.edu	37	chr18	43460143	43460143	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcagcagcccagggctctcAgagtggccttccaacactcg	11	16	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43460143	T	T	43460143	3	4	204	1	0	0	0	0	1	0	0	0	8319	188	7	5	2227	5	KIAA1632	18	43460143	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	12140568	43460143	34617105	463	160587											
RTTN	25914	broad.mit.edu	37	chr18	67860546	67860546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggacgctgcatcccagtCctggccatctcctctgggtc	11	15	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67860546	A	A	67860546	3	1	204	1	0	0	0	0	1	0	0	0	13848	855	30	3	5863	3	RTTN	18	67860546	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	24400403	67860546	10216702	464	160588											
CBLN2	147381	broad.mit.edu	37	chr18	70206146	70206146	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatcctcagcattctggcTtccccaggaaggaggcagtg	12	12	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70206146	C	C	70206146	1	2	204	0	1	0	0	0	0	0	0	0	2731	1624	56	5		5	CBLN2	18	70206146	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	2345600	70206146	7871102	465	160589											
SBNO2	22904	broad.mit.edu	37	chr19	1123583	1123597	+	In_Frame_Del	DEL	GCCTCCTCCTCCTCA	-	-													ctgtgtgccccagctcctccGcctcctcctcctcagcctcg							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1123597	-	-	1123583	7	5	204	1	0	1	0	1	0	0	0	0	13975	1087	38	0	3626	0	SBNO2	19	1123583	In_Frame_Del	DEL	GCCTCCTCCTCCTCA	TCGA-73-4659-01A-01D-1265-08		1123583	58005400	466	160590											
CHAF1A	10036	broad.mit.edu	37	chr19	4423952	4423952	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaaagggtctctccccaGccagcttctctcattaggag	10	12	3	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4423952	A	A	4423952	1	1	204	0	1	0	0	0	0	0	0	0	3342	986	34	4		4	CHAF1A	19	4423952	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	3300369	4423952	54705031	467	160591											
UHRF1	29128	broad.mit.edu	37	chr19	4950700	4950700	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactggcggtcggggaagcCggtcagggtggtgcgcaatg	21	8	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4950700	A	A	4950700	3	1	204	1	0	0	0	0	1	0	0	0	17093	652	23	1	1676	1	UHRF1	19	4950700	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	526748	4950700	54178283	468	160592											
GTF2F1	2962	broad.mit.edu	37	chr19	6383269	6383269	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagactttgccttcactgGcactgcctgagcaggcacct	11	13	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6383269	A	A	6383269	1	1	204	0	1	0	0	0	0	0	0	0	6923	1218	42	4		4	GTF2F1	19	6383269	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1432569	6383269	52745714	469	160593											
EMR1	2015	broad.mit.edu	37	chr19	6890553	6890553	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacggaaaccaaacacaaaGggtaagttggccagagagaa	11	8	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6890553	T	T	6890553	3	4	204	1	0	0	0	0	1	0	0	0	5146	1014	35	2	99	2	EMR1	19	6890553	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	507284	6890553	52238430	470	160594											
PNPLA6	10908	broad.mit.edu	37	chr19	7606728	7606728	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgactcctatctggtaccGaggaagctgtggcctcgtcc	11	13	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7606728	T	T	7606728	1	4	204	0	1	0	0	0	0	0	0	0	12264	1073	37	3		3	PNPLA6	19	7606728	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	716175	7606728	51522255	471	160595											
MUC16	94025	broad.mit.edu	37	chr19	9015496	9015496	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggctggtctctgtgggCgggacttccatctctcaggg	16	11	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9015496	A	A	9015496	1	1	204	0	1	0	0	0	0	0	0	0	10067	783	27	3		3	MUC16	19	9015496	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1408768	9015496	50113487	472	160596											
C19orf2	8725	broad.mit.edu	37	chr19	30447599	30447599	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggataacgacgttgatggggGaagtgagcatacacagacct	14	7	0	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30447599	T	T	30447599	1	4	204	0	1	0	0	0	0	0	0	0	1930	1189	41	3		3	C19orf2	19	30447599	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	21432103	30447599	28681384	473	160597											
USF2	7392	broad.mit.edu	37	chr19	35761708	35761708	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggacacacccttactctcCgtatgtgcaggggacacctg	10	15	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35761708	T	T	35761708	3	4	204	1	0	0	0	0	1	0	0	0	17159	666	23	4	690	4	USF2	19	35761708	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	5314109	35761708	23367275	474	160598											
NPHS1	4868	broad.mit.edu	37	chr19	36338914	36338914	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcccccacattcctggcCacccccatagccctggcgtg	7	21	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36338914	A	A	36338914	1	1	204	0	1	0	0	0	0	0	0	0	10677	609	21	2		2	NPHS1	19	36338914	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	577206	36338914	22790069	475	160599											
ZFP82	284406	broad.mit.edu	37	chr19	36900799	36900799	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaaacaaggccatgagatCagatggacctcagaaatccc	10	10	2	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36900799	A	A	36900799	1	1	204	0	1	0	0	0	0	0	0	0	17779	841	29	3		3	ZFP82	19	36900799	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	561885	36900799	22228184	476	160600											
ZNF383	163087	broad.mit.edu	37	chr19	37721273	37721273	+	Intron	DEL	C	-	-													atttctagagggttttacttCcccagtcatgcaacctcaga							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37721273	-	-	37721273	6	5	204	0	1	1	0	1	0	0	0	0	18000	870	30	0		0	ZNF383	19	37721273	Intron	DEL	C	TCGA-73-4659-01A-01D-1265-08	820474	37721273	21407710	477	160601											
MAP4K1	11184	broad.mit.edu	37	chr19	39096459	39096459	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaagtccctgcctccaccaGaactaacagctgtggctctg	8	15	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39096459	A	A	39096459	1	1	204	0	1	0	0	0	0	0	0	0	9351	957	33	4		4	MAP4K1	19	39096459	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	1375186	39096459	20032524	478	160602											
EID2B	126272	broad.mit.edu	37	chr19	40023401	40023401	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggacactgctatctccGgggagctcggacatctccaa	12	12	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40023401	A	A	40023401	2	1	204	1	0	0	0	0	0	0	0	1	5028	1103	39	4		4	EID2B	19	40023401	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	926942	40023401	19105582	479	160603											
PSG1	5669	broad.mit.edu	37	chr19	43382468	43382468	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcagtcaatattgagaccTatgtattggtgtgaaaacat	8	6	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43382468	C	C	43382468	1	2	204	0	1	0	0	0	0	0	0	0	12759	1537	53	5		5	PSG1	19	43382468	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3359067	43382468	15746515	480	160604											
CCDC61	729440	broad.mit.edu	37	chr19	46521386	46521386	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaatctctggccaactcCgggggctgggtccccatcaa	11	14	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46521386	T	T	46521386	2	4	204	1	0	0	0	0	0	0	0	1	2860	639	23	4		4	CCDC61	19	46521386	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	3138918	46521386	12607597	481	160605											
KPTN	11133	broad.mit.edu	37	chr19	47981106	47981106	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgggtggatcagctgaggtCaggagttcgagaccagcctg	17	9	2	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47981106	A	A	47981106	1	1	204	0	1	0	0	0	0	0	0	0	8508	841	29	3		3	KPTN	19	47981106	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	1459720	47981106	11147877	482	160606											
GRIN2D	2906	broad.mit.edu	37	chr19	48923004	48923004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcgccagctacacagCcaacctggccgccttcatga	7	18	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48923004	A	A	48923004	3	1	204	1	0	0	0	0	1	0	0	0	6848	739	26	3	2054	3	GRIN2D	19	48923004	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	941898	48923004	10205979	483	160607											
TRPM4	54795	broad.mit.edu	37	chr19	49693940	49693940	+	Intron	DEL	C	-	-													tcatttcttgctctgtgcttCcccccttgctaggaaatcag							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49693940	-	-	49693940	6	5	204	0	1	1	0	1	0	0	0	0	16713	870	30	0		0	TRPM4	19	49693940	Intron	DEL	C	TCGA-73-4659-01A-01D-1265-08	770936	49693940	9435043	484	160608											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002350	52002350	+	Intron	DEL	C	-	-													cacaaaagggtctcaggtcaCcagggtgagtcctggctctc							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52002350	-	-	52002350	6	5	204	0	1	1	0	1	0	0	0	0	14421	522	18	0		0	SIGLEC12	19	52002350	Intron	DEL	C	TCGA-73-4659-01A-01D-1265-08	2308410	52002350	7126633	485	160609											
LAIR1	3903	broad.mit.edu	37	chr19	54872405	54872405	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaggggagggcttggcGgtcaggaggaggacaaggtt	23	4	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54872405	A	A	54872405	1	1	204	0	1	0	0	0	0	0	0	0	8674	1131	39	4		4	LAIR1	19	54872405	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	2870055	54872405	4256578	486	160610											
LILRB4	11006	broad.mit.edu	37	chr19	55178286	55178286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgtcctccttcccccgGctctcagcatcgtcacggtg	8	18	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55178286	T	T	55178286	1	4	204	0	1	0	0	0	0	0	0	0	8865	1218	42	3		3	LILRB4	19	55178286	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	305881	55178286	3950697	487	160611											
NLRP7	199713	broad.mit.edu	37	chr19	55450436	55450436	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acggggccaccaccaccttcGccagctcctcctcctgagac	8	20	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55450436	A	A	55450436	3	1	204	1	0	0	0	0	1	0	0	0	10577	1087	38	4	1394	4	NLRP7	19	55450436	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	272150	55450436	3678547	488	160612											
TNNI3	7137	broad.mit.edu	37	chr19	55666266	55666266	+	Intron	SNP	G	A	A													agacctggactcctgggtctGagggagaaggggctcggggc							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55666266	A	A	55666266	1	1	204	0	1	0	0	0	0	0	0	0	16451	1305	45	4		4	TNNI3	19	55666266	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	215830	55666266	3462717	489	160613	681	2									
TNNI3	7137	broad.mit.edu	37	chr19	55666268	55666268	+	Intron	SNP	G	T	T													acctggactcctgggtctgaGggagaaggggctcggggcct							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55666268	T	T	55666268	1	4	204	0	1	0	0	0	0	0	0	0	16451	1015	35	2		2	TNNI3	19	55666268	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	2	55666268	3462715	490	160614	681	2									
NLRP11	204801	broad.mit.edu	37	chr19	56320357	56320357	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaggcatatggtgcGtcaacttttccgggtcacgg	11	9	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56320357	A	A	56320357	3	1	204	1	0	0	0	0	1	0	0	0	10568	1145	40	4	1514	4	NLRP11	19	56320357	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08	654089	56320357	2808626	491	160615											
NLRP4	147945	broad.mit.edu	37	chr19	56369782	56369782	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccatatgccaaatcccGctcctctgctggatcctgtg	7	14	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56369782	T	T	56369782	2	4	204	1	0	0	0	0	0	0	0	1	10574	1074	38	3		3	NLRP4	19	56369782	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	49425	56369782	2759201	492	160616											
NLRP13	126204	broad.mit.edu	37	chr19	56443329	56443329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggagtaccaagcagcCctcccgccttccttcttgag	8	17	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56443329	A	A	56443329	1	1	204	0	1	0	0	0	0	0	0	0	10570	638	22	2		2	NLRP13	19	56443329	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	73547	56443329	2685654	493	160617											
DEFB125	245938	broad.mit.edu	37	chr20	76649	76649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttattctctacaggtaGctttgaaccccaaaaatgtt	5	8	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76649	T	T	76649	3	4	204	1	0	0	0	0	1	0	0	0	4450	971	34	3	68	3	DEFB125	20	76649	Missense_Mutation	SNP	G	TCGA-73-4659-01A-01D-1265-08		76649	62948871	494	160618											
C20orf46	55321	broad.mit.edu	37	chr20	1162053	1162053	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagggttctggaaatgggtCtcatgctcctctgaggagaa	13	9	3	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1162053	T	T	1162053	2	4	204	1	0	0	0	0	0	0	0	1	2135	912	32	4		4	C20orf46	20	1162053	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	1085404	1162053	61863467	495	160619											
SIRPB1	10326	broad.mit.edu	37	chr20	1559269	1559269	+	Frame_Shift_Del	DEL	C	-	-													catagcacagcgcagagtggCcgactctccagctgcaactg							TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1559269	-	-	1559269	7	5	204	1	0	1	0	1	0	0	0	0	14446	739	26	0	1064	0	SIRPB1	20	1559269	Frame_Shift_Del	DEL	C	TCGA-73-4659-01A-01D-1265-08	397216	1559269	61466251	496	160620											
CHGB	1114	broad.mit.edu	37	chr20	5903619	5903619	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctctgaggtggacaaaCgacgcacgaggcccagacac	11	15	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5903619	T	T	5903619	4	4	204	1	0	0	0	0	0	1	0	0	3370	528	19	4	843	4	CHGB	20	5903619	Nonsense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	4344350	5903619	57121901	497	160621											
MYH7B	57644	broad.mit.edu	37	chr20	33567649	33567649	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcggggtggggcttgtaTgtggggcggggctagagatg	24	4	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33567649	A	A	33567649	1	1	204	0	1	0	0	0	0	0	0	0	10134	1479	51	5		5	MYH7B	20	33567649	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	27664030	33567649	29457871	498	160622											
PROCR	10544	broad.mit.edu	37	chr20	33764159	33764159	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcagcagctcaatgccTacaaccgcactcggtatgaa	8	15	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33764159	C	C	33764159	3	2	204	1	0	0	0	0	1	0	0	0	12653	1522	53	5	521	5	PROCR	20	33764159	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	196510	33764159	29261361	499	160623											
EPB41L1	2036	broad.mit.edu	37	chr20	34817356	34817356	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattctccgacgcaacactgAcgtcccagctgcgacgtact	9	15	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34817356	T	T	34817356	1	4	204	0	1	0	0	0	0	0	0	0	5194	290	10	5		5	EPB41L1	20	34817356	3'UTR	SNP	A	TCGA-73-4659-01A-01D-1265-08	1053197	34817356	28208164	500	160624											
DSN1	79980	broad.mit.edu	37	chr20	35386512	35386512	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacaatatctctttagcctCctgctggtagtgaagcaaga	10	9	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35386512	A	A	35386512	4	1	204	1	0	0	0	0	0	1	0	0	4820	864	30	3	383	3	DSN1	20	35386512	Nonsense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	569156	35386512	27639008	501	160625											
C20orf118	140711	broad.mit.edu	37	chr20	35504392	35504392	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgctcacagactcaccCagcagcagctcggcctggag	12	14	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35504392	A	A	35504392	1	1	204	0	1	0	0	0	0	0	0	0	2106	609	21	2		2	C20orf118	20	35504392	5'Flank	SNP	C	TCGA-73-4659-01A-01D-1265-08	117880	35504392	27521128	502	160626											
PTPRT	11122	broad.mit.edu	37	chr20	40743739	40743739	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctggtgccaagtatgggGctggacgtagagcagaccct	15	9	0	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40743739	T	T	40743739	1	4	204	0	1	0	0	0	0	0	0	0	12920	1218	42	3		3	PTPRT	20	40743739	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	5239347	40743739	22281781	503	160627											
PTPRT	11122	broad.mit.edu	37	chr20	41385102	41385102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggctggaggcactcacCtttcacgatcagctccgcgt	11	15	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41385102	T	T	41385102	3	4	204	1	0	0	0	0	1	0	0	0	12920	695	24	4	3631	4	PTPRT	20	41385102	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	641363	41385102	21640418	504	160628											
L3MBTL	26013	broad.mit.edu	37	chr20	42157225	42157225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtgaaggtagagcttgGtcaggggaagccgaagaaag	20	4	1	3			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42157225	T	T	42157225	1	4	204	0	1	0	0	0	0	0	0	0	8663	1276	44	3		3	L3MBTL	20	42157225	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	772123	42157225	20868295	505	160629											
BCAS1	8537	broad.mit.edu	37	chr20	52570044	52570044	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagcttgtccccattctgcAgtgagttcgtgtccaccgtg	12	12	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52570044	T	T	52570044	3	4	204	1	0	0	0	0	1	0	0	0	1355	188	7	5	155	5	BCAS1	20	52570044	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	10412819	52570044	10455476	506	160630											
BMP7	655	broad.mit.edu	37	chr20	55803316	55803316	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctggagcacctgataaaCgctgatccggaacgtctcat	9	13	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55803316	A	A	55803316	3	1	204	1	0	0	0	0	1	0	0	0	1471	536	19	3	739	3	BMP7	20	55803316	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	3233272	55803316	7222204	507	160631											
CHRNA4	1137	broad.mit.edu	37	chr20	61978252	61978252	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcactccagcacggcccgGccgccgccagcggggacagc	14	19	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61978252	T	T	61978252	1	4	204	0	1	0	0	0	0	0	0	0	3416	1218	42	3		3	CHRNA4	20	61978252	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	6174936	61978252	1047268	508	160632											
KCNQ2	3785	broad.mit.edu	37	chr20	62076647	62076647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccctccagccacggtacCggcagcagcagcctgcggcc	12	20	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62076647	A	A	62076647	3	1	204	1	0	0	0	0	1	0	0	0	8153	652	23	1	2284	1	KCNQ2	20	62076647	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	98395	62076647	948873	509	160633											
TPTE	7179	broad.mit.edu	37	chr21	10942838	10942838	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaaaataaaaaacattaTacagtatagatatcaaccct	2	7	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10942838	C	C	10942838	1	2	204	0	1	0	0	0	0	0	0	0	16554	1421	49	5		5	TPTE	21	10942838	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08		10942838	37187057	510	160634											
TPTE	7179	broad.mit.edu	37	chr21	10971410	10971410	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgttttgcaacaaatagcTacagttagtctatgtgtcat	7	6	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10971410	A	A	10971410	1	1	204	0	1	0	0	0	0	0	0	0	16554	1537	53	5		5	TPTE	21	10971410	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	28572	10971410	37158485	511	160635											
BAGE2	85319	broad.mit.edu	37	chr21	11021258	11021258	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaagttatatttttcacttGttttacacttaactggaaag	6	6	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11021258	C	C	11021258	1	2	204	0	1	0	0	0	0	0	0	0	1297	1392	48	4		4	BAGE2	21	11021258	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	49848	11021258	37108637	512	160636											
DIP2A	23181	broad.mit.edu	37	chr21	47904726	47904726	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagctgcttgcacgttatAtaccgcttattcaaggtaag	8	9	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47904726	C	C	47904726	3	2	204	1	0	0	0	0	1	0	0	0	4567	449	16	5	154	5	DIP2A	21	47904726	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	36883468	47904726	225169	513	160637											
GAB4	128954	broad.mit.edu	37	chr22	17443790	17443790	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggacagagggtggaagtgGgagtggcagtgtctgtgagt	21	3	1	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17443790	A	A	17443790	1	1	204	0	1	0	0	0	0	0	0	0	6211	1247	43	4		4	GAB4	22	17443790	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08		17443790	33860776	514	160638											
BCR	613	broad.mit.edu	37	chr22	23637372	23637372	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatccctaccctcccctgcCcgatgcatggcgtccttttt	6	19	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23637372	T	T	23637372	1	4	204	0	1	0	0	0	0	0	0	0	1393	638	22	4		4	BCR	22	23637372	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	6193582	23637372	27667194	515	160639											
RFPL2	10739	broad.mit.edu	37	chr22	32587072	32587072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaaactcacagtccagaatCcaagctctgtggtcagctgg	9	12	4	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32587072	A	A	32587072	3	1	204	1	0	0	0	0	1	0	0	0	13362	855	30	3	316	3	RFPL2	22	32587072	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	8949700	32587072	18717494	516	160640											
C22orf33	339669	broad.mit.edu	37	chr22	37387601	37387601	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctggtgtgtaagaagcCttcatgaggctctttgtctc	10	10	4	2			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37387601	A	A	37387601	3	1	204	1	0	0	0	0	1	0	0	0	2167	680	24	2	184	2	C22orf33	22	37387601	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	4800529	37387601	13916965	517	160641											
TAB1	10454	broad.mit.edu	37	chr22	39812898	39812898	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaggtaatttccccagccGacacccaggggagtcaagtc	11	13	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39812898	T	T	39812898	1	4	204	0	1	0	0	0	0	0	0	0	15614	1073	37	3		3	TAB1	22	39812898	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	2425297	39812898	11491668	518	160642											
PHF21B	112885	broad.mit.edu	37	chr22	45312581	45312581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggaggggccgccctggCtcggagacttcctatattca	14	12	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45312581	A	A	45312581	1	1	204	0	1	0	0	0	0	0	0	0	11929	812	28	3		3	PHF21B	22	45312581	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	5499683	45312581	5991985	519	160643											
MOV10L1	54456	broad.mit.edu	37	chr22	50581670	50581670	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaggacagcggcgccgcGggtgctgtggctctgtgctg	19	10	1	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50581670	T	T	50581670	1	4	204	0	1	0	0	0	0	0	0	0	9813	1131	39	1		1	MOV10L1	22	50581670	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	5269089	50581670	722896	520	160644											
NCAPH2	29781	broad.mit.edu	37	chr22	50960275	50960275	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagtggtacctggctgCctgtgagtgggtgtggtgtg	17	9	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50960275	T	T	50960275	3	4	204	1	0	0	0	0	1	0	0	0	10305	739	26	4	1191	4	NCAPH2	22	50960275	Missense_Mutation	SNP	C	TCGA-73-4659-01A-01D-1265-08	378605	50960275	344291	521	160645											
CSF2RA	1438	broad.mit.edu	37	chrX	1414408	1414408	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaccctacggtcccctactCaccacacctagtgtaactct	4	17	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1414408	A	A	1414408	1	1	204	0	1	0	0	0	0	0	0	0	3968	841	29	3		3	CSF2RA	23	1414408	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08		1414408	153856152	522	160646											
ARHGAP6	395	broad.mit.edu	37	chrX	11353812	11353812	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggtaatctaactgggtctCttattgtcccggtaggcacc	10	10	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11353812	A	A	11353812	1	1	204	0	1	0	0	0	0	0	0	0	889	928	32	3		3	ARHGAP6	23	11353812	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	9939404	11353812	143916748	523	160647											
ARHGAP6	395	broad.mit.edu	37	chrX	11353957	11353957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctctggcagaggccatgGtggggaggcctaggtaaaag	18	7	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11353957	T	T	11353957	1	4	204	0	1	0	0	0	0	0	0	0	889	1276	44	3		3	ARHGAP6	23	11353957	Intron	SNP	G	TCGA-73-4659-01A-01D-1265-08	145	11353957	143916603	524	160648											
OFD1	8481	broad.mit.edu	37	chrX	13753440	13753440	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctataccagacgtttaaggAtcggggtatactggatacac	11	8	0	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13753440	G	G	13753440	3	3	204	1	0	0	0	0	1	0	0	0	10933	333	12	5	92	5	OFD1	23	13753440	Missense_Mutation	SNP	A	TCGA-73-4659-01A-01D-1265-08	2399483	13753440	141517120	525	160649											
YY2	404281	broad.mit.edu	37	chrX	21875364	21875364	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagaacctcccaaaacagtCccttgctcttatagcggctg	9	13	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21875364	G	G	21875364	2	3	204	1	0	0	0	0	0	0	0	1	17636	842	30	4		4	YY2	23	21875364	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	8121924	21875364	133395196	526	160650											
DACH2	117154	broad.mit.edu	37	chrX	85404137	85404137	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacactcgtttcttggctctCccacttctcttacccctttg	5	16	3	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85404137	A	A	85404137	1	1	204	0	1	0	0	0	0	0	0	0	4254	870	30	3		3	DACH2	23	85404137	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	63528773	85404137	69866423	527	160651											
TCEAL6	158931	broad.mit.edu	37	chrX	101396476	101396476	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctccaagagggccttctgCccagcacgtagcccaccact	9	18	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101396476	A	A	101396476	1	1	204	0	1	0	0	0	0	0	0	0	15797	754	26	3		3	TCEAL6	23	101396476	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	15992339	101396476	53874084	528	160652											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685797	125685797	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgccgcaggccagggcccgCaccttgcggttactggggtt	15	15	0	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125685797	T	T	125685797	2	4	204	1	0	0	0	0	0	0	0	1	4297	697	25	4		4	DCAF12L1	23	125685797	Silent	SNP	C	TCGA-73-4659-01A-01D-1265-08	24289321	125685797	29584763	529	160653											
ELF4	2000	broad.mit.edu	37	chrX	129206319	129206319	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggcatcgggctcagaGgcaggaaacaggtagttggg	17	7	2	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129206319	A	A	129206319	2	1	204	1	0	0	0	0	0	0	0	1	5098	987	35	4		4	ELF4	23	129206319	Silent	SNP	G	TCGA-73-4659-01A-01D-1265-08	3520522	129206319	26064241	530	160654											
GPC3	2719	broad.mit.edu	37	chrX	132730768	132730768	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactttcaaatttacgtaggTgtaaactgcttatactcttt	5	8	2	0			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132730768	C	C	132730768	1	2	204	0	1	0	0	0	0	0	0	0	6664	1711	59	5		5	GPC3	23	132730768	Intron	SNP	T	TCGA-73-4659-01A-01D-1265-08	3524449	132730768	22539792	531	160655											
IDS	3423	broad.mit.edu	37	chrX	148577945	148577945	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggacgtcttcccgttgccTgatgtccatccaggggttgt	12	11	1	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148577945	C	C	148577945	3	2	204	1	0	0	0	0	1	0	0	0	7573	1579	55	5	887	5	IDS	23	148577945	Missense_Mutation	SNP	T	TCGA-73-4659-01A-01D-1265-08	15847177	148577945	6692615	532	160656											
VAMP7	6845	broad.mit.edu	37	chrX	155127963	155127963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatttatatcttcttcattaCcttcaaacactatgaatcta	2	9	5	1			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155127963	T	T	155127963	1	4	204	0	1	0	0	0	0	0	0	0	17244	522	18	4		4	VAMP7	23	155127963	Intron	SNP	C	TCGA-73-4659-01A-01D-1265-08	6550018	155127963	142597	533	160657											
USP9Y	8287	broad.mit.edu	37	chrY	14850274	14850274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatgatagctattttctaAgaaagataccaaaaaggaga	9	4	1	5			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14850274	T	T	14850274	1	4	204	0	1	0	0	0	0	0	0	0	17218	87	3	5		5	USP9Y	24	14850274	Intron	SNP	A	TCGA-73-4659-01A-01D-1265-08		14850274	44523292	534	160658											
SKI	6497	broad.mit.edu	37	chr1	2234776	2234776	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgctttccgaccctggtCccccgcagtgtcagcgagtg	11	16	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2234776	T	T	2234776	3	4	205	1	0	0	0	0	1	0	0	0	14470	855	30	4	1158	4	SKI	1	2234776	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08		2234776	247015845	1	160659											
VPS13D	55187	broad.mit.edu	37	chr1	12422567	12422567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgatcttgcctctgaacCtttttaaggcctaaatggga	9	8	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12422567	A	A	12422567	1	1	205	0	1	0	0	0	0	0	0	0	17319	696	24	2		2	VPS13D	1	12422567	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	10187791	12422567	236828054	2	160660											
NBPF1	55672	broad.mit.edu	37	chr1	16893659	16893659	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggatccttatcaccttcaTagaaaggtactcaccatcca	6	12	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16893659	C	C	16893659	1	2	205	0	1	0	0	0	0	0	0	0	10286	1421	49	5		5	NBPF1	1	16893659	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	4471092	16893659	232356962	3	160661											
CROCC	9696	broad.mit.edu	37	chr1	17292317	17292317	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccccagcctctccagaccTggacccggaggcagtgcgcg	12	18	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17292317	C	C	17292317	3	2	205	1	0	0	0	0	1	0	0	0	3925	1580	55	5	4615	5	CROCC	1	17292317	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	398658	17292317	231958304	4	160662											
CNR2	1269	broad.mit.edu	37	chr1	24201958	24201958	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agatagagcacagccacgttCtccagggcacttagcaggcc	11	13	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24201958	T	T	24201958	2	4	205	1	0	0	0	0	0	0	0	1	3664	912	32	4		4	CNR2	1	24201958	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	6909641	24201958	225048663	5	160663											
BAI2	576	broad.mit.edu	37	chr1	32197007	32197007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgggttgcaagtgttgacCtccttgaacagcactggggg	15	9	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32197007	A	A	32197007	3	1	205	1	0	0	0	0	1	0	0	0	1304	680	24	2	1003	2	BAI2	1	32197007	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	7995049	32197007	217053614	6	160664											
CSMD2	114784	broad.mit.edu	37	chr1	34038007	34038007	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatgtttttttttttttttCcccctcattactttgctttt	2	10	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34038007	T	T	34038007	1	4	205	0	1	0	0	0	0	0	0	0	3979	870	30	4		4	CSMD2	1	34038007	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1841000	34038007	215212614	7	160665											
CSMD2	114784	broad.mit.edu	37	chr1	34049032	34049032	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagtaagaaaaggttcggtAacaggttcaagttgcagtac	12	5	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34049032	T	T	34049032	1	4	205	0	1	0	0	0	0	0	0	0	3979	377	13	5		5	CSMD2	1	34049032	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	11025	34049032	215201589	8	160666											
DNALI1	7802	broad.mit.edu	37	chr1	38027131	38027131	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccctccccacgccctgtctGatctcatggtgtgtgtgcat	9	16	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38027131	T	T	38027131	1	4	205	0	1	0	0	0	0	0	0	0	4699	1305	45	3		3	DNALI1	1	38027131	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	3978099	38027131	211223490	9	160667											
MACF1	23499	broad.mit.edu	37	chr1	39827187	39827187	+	Frame_Shift_Del	DEL	G	-	-													ttcgaacagctctgtctacaGcagcaagaaaaggagagctc							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39827187	-	-	39827187	7	5	205	1	0	1	0	1	0	0	0	0	9232	962	34	0	12748	0	MACF1	1	39827187	Frame_Shift_Del	DEL	G	TCGA-73-4662-01A-01D-1265-08	1800056	39827187	209423434	10	160668											
LEPRE1	64175	broad.mit.edu	37	chr1	43213816	43213816	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtagagtgcagggcactgTggggcctctgaggagggcac	18	8	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43213816	A	A	43213816	1	1	205	0	1	0	0	0	0	0	0	0	8801	1711	59	5		5	LEPRE1	1	43213816	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	3386629	43213816	206036805	11	160669											
KANK4	163782	broad.mit.edu	37	chr1	62740219	62740219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagggagggcaggagggGcagggggccccaggctcagg	25	8	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62740219	T	T	62740219	3	4	205	1	0	0	0	0	1	0	0	0	8049	1203	42	3	2462	3	KANK4	1	62740219	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	19526403	62740219	186510402	12	160670											
JAK1	3716	broad.mit.edu	37	chr1	65307190	65307190	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcggaagaaaggcctctgaTtggggtcatagttcatgcag	13	8	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65307190	G	G	65307190	3	3	205	1	0	0	0	0	1	0	0	0	8007	1493	52	5	998	5	JAK1	1	65307190	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	2566971	65307190	183943431	13	160671											
LRRC7	57554	broad.mit.edu	37	chr1	70226072	70226072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatcaaattgaagaactacCcaaggtaacttttgacaacc	5	10	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70226072	A	A	70226072	3	1	205	1	0	0	0	0	1	0	0	0	9107	623	22	2	187	2	LRRC7	1	70226072	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	4918882	70226072	179024549	14	160672											
PTGER3	5733	broad.mit.edu	37	chr1	71331544	71331544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagcagagatgacatgaCtagagaggcaggaagacact	14	6	0	6			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71331544	A	A	71331544	1	1	205	0	1	0	0	0	0	0	0	0	12850	580	20	3		3	PTGER3	1	71331544	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1105472	71331544	177919077	15	160673											
BCL10	8915	broad.mit.edu	37	chr1	85736391	85736391	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgttttttctcgccgaaTagattcaacaagggtgtcca	9	9	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85736391	C	C	85736391	3	2	205	1	0	0	0	0	1	0	0	0	1367	1406	49	5	453	5	BCL10	1	85736391	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	14404847	85736391	163514230	16	160674											
NRAS	4893	broad.mit.edu	37	chr1	115251098	115251098	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaccagcactcctccaaatTgcccaatactatatactaag	3	14	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115251098	A	A	115251098	1	1	205	0	1	0	0	0	0	0	0	0	10735	1827	63	5		5	NRAS	1	115251098	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	29514707	115251098	133999523	17	160675											
IGSF3	3321	broad.mit.edu	37	chr1	117150688	117150688	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcccgctatcttcctggcgGaggtggtagatcttcagcac	11	12	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117150688	T	T	117150688	2	4	205	1	0	0	0	0	0	0	0	1	7671	1161	41	3		3	IGSF3	1	117150688	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	1899590	117150688	132099933	18	160676											
TBX15	6913	broad.mit.edu	37	chr1	119467339	119467339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccacctgtctcatccagGtgtctccagaagctagagaa	9	12	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119467339	T	T	119467339	3	4	205	1	0	0	0	0	1	0	0	0	15774	1261	44	3	1205	3	TBX15	1	119467339	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2316651	119467339	129783282	19	160677											
ECM1	1893	broad.mit.edu	37	chr1	150484952	150484952	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccgtcgggctccttaccCcaactatgaccgggacatct	9	16	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150484952	T	T	150484952	3	4	205	1	0	0	0	0	1	0	0	0	4937	623	22	4	1238	4	ECM1	1	150484952	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	31017613	150484952	98765669	20	160678											
PI4KB	5298	broad.mit.edu	37	chr1	151280153	151280153	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggcagggagcttatggTtgagcagggagagctctgag	18	7	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151280153	C	C	151280153	3	2	205	1	0	0	0	0	1	0	0	0	11969	1725	60	5	1407	5	PI4KB	1	151280153	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	795201	151280153	97970468	21	160679											
FLG	2312	broad.mit.edu	37	chr1	152286049	152286049	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccagcctttccgtggcctGacactgattgtgtgtctgag	12	12	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152286049	A	A	152286049	3	1	205	1	0	0	0	0	1	0	0	0	5979	1294	45	4	10876	4	FLG	1	152286049	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1005896	152286049	96964572	22	160680											
LCE2D	353141	broad.mit.edu	37	chr1	152636816	152636816	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgagccaccacaggcccCgtctcttccaccggcgccgg	11	20	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152636816	G	G	152636816	3	3	205	1	0	0	0	0	1	0	0	0	8740	652	23	4	237	4	LCE2D	1	152636816	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	350767	152636816	96613805	23	160681											
INTS3	65123	broad.mit.edu	37	chr1	153701264	153701264	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgagttagaggaggtaGgtgtggggggagggaaggga	24	0	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153701264	A	A	153701264	1	1	205	0	1	0	0	0	0	0	0	0	7849	1015	35	4		4	INTS3	1	153701264	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1064448	153701264	95549357	24	160682											
SLC27A3	11000	broad.mit.edu	37	chr1	153747738	153747738	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagggcggagcgtaggctgtGgggggagggctgggagtccg	24	6	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153747738	C	C	153747738	1	2	205	0	1	0	0	0	0	0	0	0	14641	1363	47	4		4	SLC27A3	1	153747738	5'Flank	SNP	G	TCGA-73-4662-01A-01D-1265-08	46474	153747738	95502883	25	160683											
BGLAP	632	broad.mit.edu	37	chr1	156212901	156212901	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccggactgtgacgagttggCtgaccacatcggctttcagg	13	11	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156212901	T	T	156212901	3	4	205	1	0	0	0	0	1	0	0	0	1423	797	28	4	265	4	BGLAP	1	156212901	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	2465163	156212901	93037720	26	160684											
IQGAP3	128239	broad.mit.edu	37	chr1	156508834	156508834	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacctttgacctgtggttTaagaggtcattgaaaccagt	9	9	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156508834	C	C	156508834	1	2	205	0	1	0	0	0	0	0	0	0	7886	1769	61	5		5	IQGAP3	1	156508834	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	295933	156508834	92741787	27	160685											
SPTA1	6708	broad.mit.edu	37	chr1	158597480	158597480	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtctcatggacagcaaagtCattttccaaagcttcatgct	8	10	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158597480	G	G	158597480	3	3	205	1	0	0	0	0	1	0	0	0	15234	826	29	4	1712	4	SPTA1	1	158597480	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	2088646	158597480	90653141	28	160686											
TAGLN2	8407	broad.mit.edu	37	chr1	159888618	159888619	+	Missense_Mutation	DNP	CC	AA	AA													tctggcgtggcatcccgtagCcagtcatgcctgcctgagac							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	159888619	AA	AA	159888618	3	1	205	1	0	0	0	0	1	0	0	0	15658	739	26	3	31	3	TAGLN2	1	159888618	Missense_Mutation	DNP	CC	TCGA-73-4662-01A-01D-1265-08	1291138	159888618	89362003	29	160687											
SLAMF7	57823	broad.mit.edu	37	chr1	160719949	160719949	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccttcttcagctcctagcCcccatgggaacagacactgt	7	16	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160719949	G	G	160719949	1	3	205	0	1	0	0	0	0	0	0	0	14482	638	22	4		4	SLAMF7	1	160719949	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	831331	160719949	88530672	30	160688											
DUSP27	92235	broad.mit.edu	37	chr1	167097069	167097069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcttccgatattcttccCgcagtaattcccagaaacct	7	13	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167097069	A	A	167097069	3	1	205	1	0	0	0	0	1	0	0	0	4864	652	23	1	2719	1	DUSP27	1	167097069	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	6377120	167097069	82153552	31	160689											
C1orf112	55732	broad.mit.edu	37	chr1	169773439	169773439	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataaatcatgtatcaattaAaattgtctctaatgattcat	3	5	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169773439	C	C	169773439	1	2	205	0	1	0	0	0	0	0	0	0	2005	29	1	5		5	C1orf112	1	169773439	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	2676370	169773439	79477182	32	160690											
FMO1	2326	broad.mit.edu	37	chr1	171252251	171252251	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctagacctaaacttaagTtgcatttgaggtttttattt	7	6	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171252251	A	A	171252251	1	1	205	0	1	0	0	0	0	0	0	0	6012	1740	60	5		5	FMO1	1	171252251	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	1478812	171252251	77998370	33	160691											
TNR	7143	broad.mit.edu	37	chr1	175336417	175336417	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatattccaactccatactcAgtgccaggtaccagatctat	6	12	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175336417	T	T	175336417	2	4	205	1	0	0	0	0	0	0	0	1	16461	175	7	5		5	TNR	1	175336417	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	4084166	175336417	73914204	34	160692											
CACNA1E	777	broad.mit.edu	37	chr1	181726319	181726319	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccagaaaggattcttggGccagcaatgtaagaaaggag	13	7	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181726319	T	T	181726319	1	4	205	0	1	0	0	0	0	0	0	0	2568	1218	42	3		3	CACNA1E	1	181726319	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	6389902	181726319	67524302	35	160693											
HMCN1	83872	broad.mit.edu	37	chr1	185959285	185959285	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggaaagttttagcttatGtcctgaatagcatcttttta	7	5	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185959285	T	T	185959285	1	4	205	0	1	0	0	0	0	0	0	0	7287	1392	48	3		3	HMCN1	1	185959285	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	4232966	185959285	63291336	36	160694											
HMCN1	83872	broad.mit.edu	37	chr1	185964275	185964275	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggggagtgagagaaaagcCctagagctaaatagattatc	13	5	0	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185964275	T	T	185964275	1	4	205	0	1	0	0	0	0	0	0	0	7287	638	22	4		4	HMCN1	1	185964275	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	4990	185964275	63286346	37	160695											
HMCN1	83872	broad.mit.edu	37	chr1	186055633	186055633	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgtatttccaaacttttgtCgtgcttcatttatttattca	5	7	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186055633	A	A	186055633	1	1	205	0	1	0	0	0	0	0	0	0	7287	899	31	3		3	HMCN1	1	186055633	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	91358	186055633	63194988	38	160696											
PLA2G4A	5321	broad.mit.edu	37	chr1	186823505	186823505	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtcatttatagatcctTaccagcacattatagtaagt	5	7	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186823505	A	A	186823505	3	1	205	1	0	0	0	0	1	0	0	0	12096	1754	61	5	21	5	PLA2G4A	1	186823505	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	767872	186823505	62427116	39	160697											
IGFN1	91156	broad.mit.edu	37	chr1	201184736	201184736	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtcaaggctgggaagcCggtgatagtgaagatcccct	16	8	1	3	rs149837907	by1000genomes	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201184736	T	T	201184736	3	4	205	1	0	0	0	0	1	0	0	0	7660	652	23	4	9119	4	IGFN1	1	201184736	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	14361231	201184736	48065885	40	160698											
KDM5B	10765	broad.mit.edu	37	chr1	202743725	202743725	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attataaaataagtaagatgGtcattagctctttaccttat	5	5	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202743725	A	A	202743725	1	1	205	0	1	0	0	0	0	0	0	0	8204	1276	44	4		4	KDM5B	1	202743725	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1558989	202743725	46506896	41	160699											
ADORA1	134	broad.mit.edu	37	chr1	203134690	203134690	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcagctcaacaagaagGtgtcggcctcctccggcgac	12	14	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203134690	C	C	203134690	3	2	205	1	0	0	0	0	1	0	0	0	326	1261	44	4	649	4	ADORA1	1	203134690	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	390965	203134690	46115931	42	160700											
CHIT1	1118	broad.mit.edu	37	chr1	203194938	203194938	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccttgggcaggaagcgaGcctccccctgtctgtactgg	13	13	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203194938	A	A	203194938	3	1	205	1	0	0	0	0	1	0	0	0	3377	971	34	4	1320	4	CHIT1	1	203194938	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	60248	203194938	46055683	43	160701											
SRGAP2	23380	broad.mit.edu	37	chr1	206594684	206594684	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatagtccatcccacaggCatttattgagcgccactgtg	8	11	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206594684	T	T	206594684	1	4	205	0	1	0	0	0	0	0	0	0	15264	725	25	4		4	SRGAP2	1	206594684	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	3399746	206594684	42655937	44	160702											
CR1L	1379	broad.mit.edu	37	chr1	207883741	207883741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaggaattccttgtgggCtaccccccaacatcaccaat	6	16	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207883741	A	A	207883741	1	1	205	0	1	0	0	0	0	0	0	0	3873	812	28	3		3	CR1L	1	207883741	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1289057	207883741	41366880	45	160703											
KCNH1	3756	broad.mit.edu	37	chr1	211192154	211192154	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctcccctccagtggtggtgGaatctgatcagcaaaaccaa	9	12	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211192154	C	C	211192154	3	2	205	1	0	0	0	0	1	0	0	0	8101	1174	41	4	1990	4	KCNH1	1	211192154	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	3308413	211192154	38058467	46	160704											
ANGEL2	90806	broad.mit.edu	37	chr1	213186785	213186785	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaataaatacactccttGaggcaccactttttgttcag	6	9	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	213186785	C	C	213186785	1	2	205	0	1	0	0	0	0	0	0	0	609	1305	45	4		4	ANGEL2	1	213186785	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1994631	213186785	36063836	47	160705											
KCNK2	3776	broad.mit.edu	37	chr1	215368231	215368231	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttagttagtaattttagCaatacctagattgtttactt	5	4	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215368231	A	A	215368231	1	1	205	0	1	0	0	0	0	0	0	0	8136	725	25	3		3	KCNK2	1	215368231	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2181446	215368231	33882390	48	160706											
ESRRG	2104	broad.mit.edu	37	chr1	216850421	216850421	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaggtccgacactaaccttGaattgtcctcttgaagaatg	8	11	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216850421	A	A	216850421	4	1	205	1	0	0	0	0	0	1	0	0	5304	1299	45	4	931	4	ESRRG	1	216850421	Nonsense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1482190	216850421	32400200	49	160707											
MARK1	4139	broad.mit.edu	37	chr1	220791808	220791808	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaagaagtatgatgggcctGaagtggatgtgtggagtctg	17	3	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220791808	T	T	220791808	4	4	205	1	0	0	0	0	0	1	0	0	9404	1291	45	3	739	3	MARK1	1	220791808	Nonsense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	3941387	220791808	28458813	50	160708											
RYR2	6262	broad.mit.edu	37	chr1	237550707	237550707	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccacttcaattagagggCctgtccttgctgcaaagttg	9	11	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237550707	A	A	237550707	1	1	205	0	1	0	0	0	0	0	0	0	13880	754	26	3		3	RYR2	1	237550707	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	16758899	237550707	11699914	51	160709											
RYR2	6262	broad.mit.edu	37	chr1	237982600	237982600	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagtgtttcctggcaaagCcaaatcaaacttttccttcc	5	12	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237982600	T	T	237982600	1	4	205	0	1	0	0	0	0	0	0	0	13880	754	26	4		4	RYR2	1	237982600	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	431893	237982600	11268021	52	160710											
RYR2	6262	broad.mit.edu	37	chr1	237991774	237991774	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccattcatgactcagcttCtttgttgtcctgggccctcg	8	14	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237991774	T	T	237991774	1	4	205	0	1	0	0	0	0	0	0	0	13880	928	32	4		4	RYR2	1	237991774	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	9174	237991774	11258847	53	160711											
RGS7	6000	broad.mit.edu	37	chr1	241032264	241032264	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagagagtttctaaagcccTaagtgtactgtggttctcaa	9	7	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241032264	C	C	241032264	1	2	205	0	1	0	0	0	0	0	0	0	13419	1537	53	5		5	RGS7	1	241032264	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	3040490	241032264	8218357	54	160712											
ZNF238	10472	broad.mit.edu	37	chr1	244217323	244217323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacattgttacagcccccGctttcgctctcctgcttgaa	8	15	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	244217323	T	T	244217323	3	4	205	1	0	0	0	0	1	0	0	0	17916	1087	38	3	253	3	ZNF238	1	244217323	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	3185059	244217323	5033298	55	160713											
KIF26B	55083	broad.mit.edu	37	chr1	245530037	245530037	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaaactatccaactctttGagtacgtctcgggtttgact	7	10	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245530037	T	T	245530037	1	4	205	0	1	0	0	0	0	0	0	0	8365	1305	45	3		3	KIF26B	1	245530037	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1312714	245530037	3720584	56	160714											
TFB2M	64216	broad.mit.edu	37	chr1	246714570	246714570	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agataacacttaatacatgaTacaagtctggatttccggga	8	7	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	246714570	C	C	246714570	3	2	205	1	0	0	0	0	1	0	0	0	15917	1406	49	5	466	5	TFB2M	1	246714570	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	1184533	246714570	2536051	57	160715											
C1orf150	148823	broad.mit.edu	37	chr1	247737774	247737774	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccctgagcagtgcatgAaacattcctttctggctaaa	7	11	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247737774	T	T	247737774	1	4	205	0	1	0	0	0	0	0	0	0	2024	261	9	5		5	C1orf150	1	247737774	3'UTR	SNP	A	TCGA-73-4662-01A-01D-1265-08	1023204	247737774	1512847	58	160716											
OR2G3	81469	broad.mit.edu	37	chr1	247769097	247769097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacctctctttactggaCatctgcttcactactagcct	5	14	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247769097	A	A	247769097	3	1	205	1	0	0	0	0	1	0	0	0	11093	477	17	3	212	3	OR2G3	1	247769097	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	31323	247769097	1481524	59	160717											
OR2M4	26245	broad.mit.edu	37	chr1	248402862	248402862	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatgctaatctttccagTttcagttatcatactttcct	5	9	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248402862	G	G	248402862	3	3	205	1	0	0	0	0	1	0	0	0	11106	1725	60	5	634	5	OR2M4	1	248402862	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	633765	248402862	847759	60	160718											
OR2T11	127077	broad.mit.edu	37	chr1	248790027	248790027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaaagacacttcttgcGgttcatcaggactgggtatc	10	10	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248790027	A	A	248790027	3	1	205	1	0	0	0	0	1	0	0	0	11112	1116	39	4	551	4	OR2T11	1	248790027	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	387165	248790027	460594	61	160719											
COLEC11	78989	broad.mit.edu	37	chr2	3673659	3673659	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaaaggaagtgcacctcgtCctttgtagaaatgggatcac	10	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3673659	T	T	3673659	1	4	205	0	1	0	0	0	0	0	0	0	3743	855	30	4		4	COLEC11	2	3673659	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08		3673659	239525714	62	160720											
ROCK2	9475	broad.mit.edu	37	chr2	11332269	11332273	+	Splice_Site	DEL	ATTAC	-	-													tccttaccacattttagtttAttacctaggtttgtttgggg							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11332273	-	-	11332269	8	5	205	1	0	1	0	1	0	0	1	0	13629	464	16	0		0	ROCK2	2	11332269	Splice_Site	DEL	ATTAC	TCGA-73-4662-01A-01D-1265-08	7658610	11332269	231867104	63	160721											
KCNS3	3790	broad.mit.edu	37	chr2	18113214	18113214	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggtaggacttcggtctctAggtgccacactgagacacag	12	11	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18113214	G	G	18113214	2	3	205	1	0	0	0	0	0	0	0	1	8160	407	15	5		5	KCNS3	2	18113214	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	6780945	18113214	225086159	64	160722											
ATAD2B	54454	broad.mit.edu	37	chr2	23980357	23980357	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacttctcattattgctacAttccagtgcctctagtttct	4	11	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23980357	T	T	23980357	3	4	205	1	0	0	0	0	1	0	0	0	1076	217	8	5	383	5	ATAD2B	2	23980357	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	5867143	23980357	219219016	65	160723											
CIB4	130106	broad.mit.edu	37	chr2	26863485	26863485	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccactccattcatccctgctGtggcccctggggagtggcgc	12	16	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26863485	C	C	26863485	1	2	205	0	1	0	0	0	0	0	0	0	3454	1392	48	4		4	CIB4	2	26863485	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2883128	26863485	216335888	66	160724											
BIRC6	57448	broad.mit.edu	37	chr2	32706530	32706530	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggtttttaaggtatgataCatgagaatagtctttgaaag	10	2	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32706530	G	G	32706530	1	3	205	0	1	0	0	0	0	0	0	0	1444	493	17	4		4	BIRC6	2	32706530	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	5843045	32706530	210492843	67	160725											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44023920	44023921	+	Missense_Mutation	DNP	GG	CT	CT													gatttgttgcacattattatGgagcatcattaatggtttgt							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	44023921	CT	CT	44023920	3	2	205	1	0	0	0	0	1	0	0	0	4887	1349	47	4	769	4	DYNC2LI1	2	44023920	Missense_Mutation	DNP	GG	TCGA-73-4662-01A-01D-1265-08	11317390	44023920	199175453	68	160726											
C2orf34	79823	broad.mit.edu	37	chr2	44970769	44970769	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttctcctcaagcgttttacGatgggataatgagacagatg	10	7	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44970769	A	A	44970769	3	1	205	1	0	0	0	0	1	0	0	0	2185	1058	37	4	662	4	C2orf34	2	44970769	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	946849	44970769	198228604	69	160727											
PSME4	23198	broad.mit.edu	37	chr2	54120044	54120044	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatctgcaaccaaatgttcTaaatggggcttcagaactgg	10	8	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54120044	A	A	54120044	3	1	205	1	0	0	0	0	1	0	0	0	12815	1519	53	5	1483	5	PSME4	2	54120044	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	9149275	54120044	189079329	70	160728											
CCDC88A	55704	broad.mit.edu	37	chr2	55561797	55561797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctagctgtagctgagcCattttcatgcttgcacactt	7	10	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55561797	A	A	55561797	3	1	205	1	0	0	0	0	1	0	0	0	2891	594	21	2	3527	2	CCDC88A	2	55561797	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	1441753	55561797	187637576	71	160729											
ADD2	119	broad.mit.edu	37	chr2	70906031	70906031	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggctggaatctccacctcActtttgtgtttggttttctc	9	10	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70906031	T	T	70906031	3	4	205	1	0	0	0	0	1	0	0	0	305	156	6	5	1193	5	ADD2	2	70906031	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	15344234	70906031	172293342	72	160730											
CLEC4F	165530	broad.mit.edu	37	chr2	71043658	71043658	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaattttcctttagtccctgGatctcagcattggctccttc	6	12	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71043658	C	C	71043658	3	2	205	1	0	0	0	0	1	0	0	0	3548	1164	41	4	930	4	CLEC4F	2	71043658	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	137627	71043658	172155715	73	160731											
EXOC6B	23233	broad.mit.edu	37	chr2	72968242	72968242	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactccgcctcaaaaaaaaaAgggggggtgggtattgtttt	13	6	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72968242	G	G	72968242	1	3	205	0	1	0	0	0	0	0	0	0	5351	87	3	5		5	EXOC6B	2	72968242	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	1924584	72968242	170231131	74	160732											
SFXN5	94097	broad.mit.edu	37	chr2	73215352	73215352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcggtcccccacacccacCcacagcacacatctatgtgg	7	19	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73215352	A	A	73215352	1	1	205	0	1	0	0	0	0	0	0	0	14311	638	22	2		2	SFXN5	2	73215352	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	247110	73215352	169984021	75	160733											
TEKT4	150483	broad.mit.edu	37	chr2	95539684	95539684	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccctccctgggcacacatCaaggccctgccccaccccgc	9	22	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95539684	A	A	95539684	1	1	205	0	1	0	0	0	0	0	0	0	15877	841	29	3		3	TEKT4	2	95539684	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	22324332	95539684	147659689	76	160734											
SNRNP200	23020	broad.mit.edu	37	chr2	96953169	96953169	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggacaagggcgagagcatcCcacacaccaatctcattatg	9	12	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96953169	G	G	96953169	1	3	205	0	1	0	0	0	0	0	0	0	14966	638	22	4		4	SNRNP200	2	96953169	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1413485	96953169	146246204	77	160735											
NCAPH	23397	broad.mit.edu	37	chr2	97008559	97008559	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtcagagattcttaaacaGaaagacaccgaaccaaccaa	6	10	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97008559	T	T	97008559	3	4	205	1	0	0	0	0	1	0	0	0	10304	933	33	3	443	3	NCAPH	2	97008559	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	55390	97008559	146190814	78	160736											
FHL2	2274	broad.mit.edu	37	chr2	106013203	106013203	+	5'UTR	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gatggtcatcttgaggaagcGaactcagtataatgcaactt	10	7	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106013203	C	C	106013203	1	2	205	0	1	0	0	0	0	0	0	0	5936	1073	37	4		4	FHL2	2	106013203	5'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	9004644	106013203	137186170	79	160737											
IL1F5	26525	broad.mit.edu	37	chr2	113820007	113820007	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctgcttctgccctcacctGacctcccctcctctgccggc	6	23	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113820007	T	T	113820007	1	4	205	0	1	0	0	0	0	0	0	0	7723	1305	45	3		3	IL1F5	2	113820007	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	7806804	113820007	129379366	80	160738											
EPB41L5	57669	broad.mit.edu	37	chr2	120849214	120849214	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggcccagcaaacgatattCtagacgaactctacaaatga	7	10	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120849214	G	G	120849214	3	3	205	1	0	0	0	0	1	0	0	0	5199	913	32	4	1173	4	EPB41L5	2	120849214	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	7029207	120849214	122350159	81	160739											
CNTNAP5	129684	broad.mit.edu	37	chr2	124783218	124783218	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgattgggagggaccgctcaCtcgggggaaatggattcttt	15	8	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124783218	G	G	124783218	1	3	205	0	1	0	0	0	0	0	0	0	3682	580	20	4		4	CNTNAP5	2	124783218	5'UTR	SNP	C	TCGA-73-4662-01A-01D-1265-08	3934004	124783218	118416155	82	160740											
SMPD4	55627	broad.mit.edu	37	chr2	130931074	130931074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagcctctctccggtgaCcaacctacctacccagggtc	7	19	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130931074	A	A	130931074	1	1	205	0	1	0	0	0	0	0	0	0	14921	522	18	3		3	SMPD4	2	130931074	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	6147856	130931074	112268299	83	160741											
PTPN18	26469	broad.mit.edu	37	chr2	131127758	131127758	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaacccctctgtgtccaCtgcaggttttggaaatgggc	11	12	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131127758	T	T	131127758	2	4	205	1	0	0	0	0	0	0	0	1	12890	564	20	4		4	PTPN18	2	131127758	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	196684	131127758	112071615	84	160742											
YSK4	80122	broad.mit.edu	37	chr2	135745193	135745193	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtaatgaaactctttttgAagcagctttattatttctca	5	6	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135745193	T	T	135745193	3	4	205	1	0	0	0	0	1	0	0	0	17622	246	9	5	2753	5	YSK4	2	135745193	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	4617435	135745193	107454180	85	160743											
LRP1B	53353	broad.mit.edu	37	chr2	141460200	141460200	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgcaaaaagacattactAataacagcagtagcattcac	5	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141460200	G	G	141460200	1	3	205	0	1	0	0	0	0	0	0	0	9042	377	13	5		5	LRP1B	2	141460200	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	5715007	141460200	101739173	86	160744											
LRP1B	53353	broad.mit.edu	37	chr2	141986802	141986802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcatctgttaatcctcctGcttttgttatctggatacat	5	9	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141986802	T	T	141986802	3	4	205	1	0	0	0	0	1	0	0	0	9042	1319	46	3	13343	3	LRP1B	2	141986802	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	526602	141986802	101212571	87	160745											
LY75	4065	broad.mit.edu	37	chr2	160698699	160698700	+	Intron	DEL	TA	-	-													aaagtgactctctctctctcTatatatatatatgtaatagc					rs41265133	by1000genomes	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160698700	-	-	160698699	6	5	205	0	1	1	0	1	0	0	0	0	9187	1537	53	0		0	LY75	2	160698699	Intron	DEL	TA	TCGA-73-4662-01A-01D-1265-08	18711897	160698699	82500674	88	160746											
GORASP2	26003	broad.mit.edu	37	chr2	171806689	171806689	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attttatatatattaattttAgggtgtgtgtttatgtcatt	7	1	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171806689	T	T	171806689	1	4	205	0	1	0	0	0	0	0	0	0	6640	435	15	5		5	GORASP2	2	171806689	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	11107990	171806689	71392684	89	160747											
WIPF1	7456	broad.mit.edu	37	chr2	175431778	175431778	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagcgtgaatcttcaaaaAccttggcagaaatactcact	6	10	4	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175431778	C	C	175431778	1	2	205	0	1	0	0	0	0	0	0	0	17494	58	2	5		5	WIPF1	2	175431778	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	3625089	175431778	67767595	90	160748											
PDE11A	50940	broad.mit.edu	37	chr2	178879143	178879143	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcacaataatgattttgtCttgtatccagttagcttgtc	7	7	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178879143	A	A	178879143	3	1	205	1	0	0	0	0	1	0	0	0	11725	912	32	3	1920	3	PDE11A	2	178879143	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	3447365	178879143	64320230	91	160749											
TTN	7273	broad.mit.edu	37	chr2	179395969	179395969	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcttgctgccaaagtcgTcttgatctttctggttgtgg	10	8	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179395969	C	C	179395969	3	2	205	1	0	0	0	0	1	0	0	0	16861	1667	58	5	2626	5	TTN	2	179395969	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	516826	179395969	63803404	92	160750											
TTN	7273	broad.mit.edu	37	chr2	179575399	179575399	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgcaagagtcttttccCacttcattcacagcatagca	7	12	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179575399	A	A	179575399	2	1	205	1	0	0	0	0	0	0	0	1	16861	581	21	2		2	TTN	2	179575399	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	179430	179575399	63623974	93	160751											
TTN	7273	broad.mit.edu	37	chr2	179614294	179614294	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccttacagattctcccTggtcttgcagttgctgatct	9	12	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179614294	G	G	179614294	3	3	205	1	0	0	0	0	1	0	0	0	16861	1580	55	5	97464	5	TTN	2	179614294	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	38895	179614294	63585079	94	160752											
ZNF804A	91752	broad.mit.edu	37	chr2	185798422	185798422	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaaaaggcactccaacgCctgcacaagctggctgagct	11	13	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185798422	A	A	185798422	2	1	205	1	0	0	0	0	0	0	0	1	18299	726	26	3		3	ZNF804A	2	185798422	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	6184128	185798422	57400951	95	160753											
ZNF804A	91752	broad.mit.edu	37	chr2	185800661	185800661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagagaatactaaagatGctaccactgttgctgaagat	10	6	0	5	rs111510601	byFrequency	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185800661	T	T	185800661	3	4	205	1	0	0	0	0	1	0	0	0	18299	1319	46	3	552	3	ZNF804A	2	185800661	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2239	185800661	57398712	96	160754											
COL3A1	1281	broad.mit.edu	37	chr2	189873816	189873816	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggatttcaaaatcaacaCcgatgagattatgacttcac	6	8	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189873816	A	A	189873816	3	1	205	1	0	0	0	0	1	0	0	0	3720	507	18	3	3882	3	COL3A1	2	189873816	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	4073155	189873816	53325557	97	160755											
PTH2R	5746	broad.mit.edu	37	chr2	209307271	209307271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggtctcacaatattttcCaaatgttttcctcaaatgca	5	10	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209307271	A	A	209307271	1	1	205	0	1	0	0	0	0	0	0	0	12866	609	21	2		2	PTH2R	2	209307271	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	19433455	209307271	33892102	98	160756											
ABCA12	26154	broad.mit.edu	37	chr2	215862467	215862467	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaagcttttttacaaaggcAgctataaatacaacccaggc	6	10	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215862467	T	T	215862467	2	4	205	1	0	0	0	0	0	0	0	1	30	175	7	5		5	ABCA12	2	215862467	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	6555196	215862467	27336906	99	160757											
FAM134A	79137	broad.mit.edu	37	chr2	220045854	220045854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgtacactcgcctggaGcccctgctcatgcagctgga	12	13	1	0	rs149941380	byFrequency;by1000genomes	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220045854	T	T	220045854	3	4	205	1	0	0	0	0	1	0	0	0	5491	962	34	3	733	3	FAM134A	2	220045854	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	4183387	220045854	23153519	100	160758											
SPEG	10290	broad.mit.edu	37	chr2	220354009	220354010	+	Intron	INS	-	A	A													tagggttcttgtggagcaccINSatggccttgccccaaggcac							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220354010	A	A	220354009	6	5	205	0	1	1	1	0	0	0	0	0	15154	609	21	0		0	SPEG	2	220354009	Intron	INS	-	TCGA-73-4662-01A-01D-1265-08	308155	220354009	22845364	101	160759											
OBSL1	23363	broad.mit.edu	37	chr2	220434961	220434961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctttcacgtgcagctgcaCggcactgagcgtctggcccg	12	15	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220434961	A	A	220434961	3	1	205	1	0	0	0	0	1	0	0	0	10908	536	19	3	4932	3	OBSL1	2	220434961	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	80952	220434961	22764412	102	160760											
SERPINE2	5270	broad.mit.edu	37	chr2	224856464	224856464	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattaagttaaagcactcaAgggcctttctgccgccagca	9	11	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224856464	G	G	224856464	1	3	205	0	1	0	0	0	0	0	0	0	14225	87	3	5		5	SERPINE2	2	224856464	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	4421503	224856464	18342909	103	160761											
TRIP12	9320	broad.mit.edu	37	chr2	230663493	230663494	+	Intron	DNP	CT	AA	AA													aacaaattaaagtgctgtgtCtatgtatcgtctccacacaa							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	230663494	AA	AA	230663493	1	1	205	0	1	0	0	0	0	0	0	0	16681	928	32	3		3	TRIP12	2	230663493	Intron	DNP	CT	TCGA-73-4662-01A-01D-1265-08	5807029	230663493	12535880	104	160762											
ALPI	248	broad.mit.edu	37	chr2	233322813	233322813	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcgcctgctgagcaggaAcccccgcggcttctacctct	10	18	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233322813	G	G	233322813	3	3	205	1	0	0	0	0	1	0	0	0	543	43	2	5	992	5	ALPI	2	233322813	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	2659320	233322813	9876560	105	160763											
INPP5D	3635	broad.mit.edu	37	chr2	234106843	234106843	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctgcacgtgaagcagacCttgtcccctgaccagcagcc	9	18	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234106843	T	T	234106843	2	4	205	1	0	0	0	0	0	0	0	1	7826	668	24	4		4	INPP5D	2	234106843	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	784030	234106843	9092530	106	160764											
COL6A3	1293	broad.mit.edu	37	chr2	238234302	238234302	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcacagcttttggtgtttgGatcatagtaccattttaata	8	6	1	0	rs147533489	byFrequency	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238234302	A	A	238234302	3	1	205	1	0	0	0	0	1	0	0	0	3733	1174	41	4	147	4	COL6A3	2	238234302	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	4127459	238234302	4965071	107	160765											
CNTN4	152330	broad.mit.edu	37	chr3	3072687	3072687	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttgttgttattgttgttCttgaaatattttcatgatat	6	2	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3072687	A	A	3072687	1	1	205	0	1	0	0	0	0	0	0	0	3675	928	32	3		3	CNTN4	3	3072687	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08		3072687	194949743	108	160766											
IQSEC1	9922	broad.mit.edu	37	chr3	12944171	12944171	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaacaaaaaaaaaaccAaaaaaaaaaaaaaaaaaaaa	0	4	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12944171	C	C	12944171	1	2	205	0	1	0	0	0	0	0	0	0	7887	145	5	5		5	IQSEC1	3	12944171	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	9871484	12944171	185078259	109	160767											
FBLN2	2199	broad.mit.edu	37	chr3	13659609	13659609	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatggcgggccgagaggcccTgtcactgggcacagaggccg	18	12	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13659609	A	A	13659609	3	1	205	1	0	0	0	0	1	0	0	0	5756	1580	55	5	471	5	FBLN2	3	13659609	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	715438	13659609	184362821	110	160768											
SCN10A	6336	broad.mit.edu	37	chr3	38764763	38764763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggctgctgccacctgGggcatgtgtgtctgatgcgg	17	11	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38764763	T	T	38764763	1	4	205	0	1	0	0	0	0	0	0	0	14025	1247	43	2		2	SCN10A	3	38764763	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	25105154	38764763	159257667	111	160769											
EPHA6	285220	broad.mit.edu	37	chr3	97356765	97356765	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttggtcggaatgctccgaGgcattgcatcaggcatgaag	14	8	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97356765	A	A	97356765	3	1	205	1	0	0	0	0	1	0	0	0	5213	1000	35	4	2745	4	EPHA6	3	97356765	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	58592002	97356765	100665665	112	160770											
IMPG2	50939	broad.mit.edu	37	chr3	100964568	100964568	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaccatgtttttttcataGccatagtctcttcctctctt	4	12	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100964568	T	T	100964568	1	4	205	0	1	0	0	0	0	0	0	0	7799	986	34	3		3	IMPG2	3	100964568	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	3607803	100964568	97057862	113	160771											
SENP7	57337	broad.mit.edu	37	chr3	101176556	101176556	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggcaagtttttcctgattCatgattgtttctttcatcct	6	8	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101176556	G	G	101176556	1	3	205	0	1	0	0	0	0	0	0	0	14164	841	29	4		4	SENP7	3	101176556	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	211988	101176556	96845874	114	160772											
TAGLN3	29114	broad.mit.edu	37	chr3	111718394	111718394	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagtgcgccgaggacaTagagcacccgccccccggca	12	18	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111718394	C	C	111718394	3	2	205	1	0	0	0	0	1	0	0	0	15659	1406	49	5	127	5	TAGLN3	3	111718394	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	10541838	111718394	86304036	115	160773											
TIGIT	201633	broad.mit.edu	37	chr3	114014579	114014579	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctccccatccttcaaggaTcgagtggccccaggtcccgg	10	16	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114014579	A	A	114014579	3	1	205	1	0	0	0	0	1	0	0	0	16025	1432	50	5	255	5	TIGIT	3	114014579	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	2296185	114014579	84007851	116	160774											
IGSF11	152404	broad.mit.edu	37	chr3	118644931	118644931	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataactaataaaatgggtaaAgcagcactgtacataccctg	7	8	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118644931	C	C	118644931	1	2	205	0	1	0	0	0	0	0	0	0	7668	87	3	5		5	IGSF11	3	118644931	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	4630352	118644931	79377499	117	160775											
FSTL1	11167	broad.mit.edu	37	chr3	120118703	120118703	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggcaacagcaacaccTgaaccagcacggaggctgcc	11	14	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120118703	A	A	120118703	1	1	205	0	1	0	0	0	0	0	0	0	6137	1595	55	5		5	FSTL1	3	120118703	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	1473772	120118703	77903727	118	160776											
ACAD9	28976	broad.mit.edu	37	chr3	128598331	128598331	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catcaggcggcgcgggccagCcaggtgcacgtgactaaggc	16	13	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128598331	G	G	128598331	1	3	205	0	1	0	0	0	0	0	0	0	111	754	26	4		4	ACAD9	3	128598331	5'Flank	SNP	C	TCGA-73-4662-01A-01D-1265-08	8479628	128598331	69424099	119	160777											
ATP2C1	27032	broad.mit.edu	37	chr3	130682828	130682828	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttatagtttggctgtagcaGcaattcctgaaggtctcccc	10	10	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130682828	A	A	130682828	3	1	205	1	0	0	0	0	1	0	0	0	1147	971	34	4	959	4	ATP2C1	3	130682828	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2084497	130682828	67339602	120	160778											
PPP2R3A	5523	broad.mit.edu	37	chr3	135721504	135721504	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatgatcctagaactctAaaagctgtccaggtccaatc	7	10	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135721504	G	G	135721504	2	3	205	1	0	0	0	0	0	0	0	1	12489	349	13	5		5	PPP2R3A	3	135721504	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	5038676	135721504	62300926	121	160779											
DBR1	51163	broad.mit.edu	37	chr3	137881363	137881363	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagttacatggaaccttgaGatcatgattcaatttttcca	6	7	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137881363	A	A	137881363	3	1	205	1	0	0	0	0	1	0	0	0	4290	942	33	4	635	4	DBR1	3	137881363	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2159859	137881363	60141067	122	160780											
DBR1	51163	broad.mit.edu	37	chr3	137882759	137882759	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaaccacaggtaattcttCatacacggaataggatgaaa	7	8	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137882759	T	T	137882759	1	4	205	0	1	0	0	0	0	0	0	0	4290	841	29	4		4	DBR1	3	137882759	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1396	137882759	60139671	123	160781											
ZIC4	84107	broad.mit.edu	37	chr3	147113580	147113580	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgggacttgaggaaatccaGacccgagggcctgcttcccc	12	13	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147113580	A	A	147113580	1	1	205	0	1	0	0	0	0	0	0	0	17807	957	33	4		4	ZIC4	3	147113580	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	9230821	147113580	50908850	124	160782											
GFM1	85476	broad.mit.edu	37	chr3	158380533	158380533	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgagctctttttcatctAtctctacaatgcacttgata	4	10	4	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158380533	G	G	158380533	1	3	205	0	1	0	0	0	0	0	0	0	6405	464	16	5		5	GFM1	3	158380533	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	11266953	158380533	39641897	125	160783											
ATP13A4	84239	broad.mit.edu	37	chr3	193185342	193185342	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttaaatcatgcctgcacCcactcatcatacaacagaca	3	14	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193185342	A	A	193185342	1	1	205	0	1	0	0	0	0	0	0	0	1130	638	22	2		2	ATP13A4	3	193185342	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	34804809	193185342	4837088	126	160784											
ZNF141	7700	broad.mit.edu	37	chr4	337651	337651	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgaccagcagaatttGtatagagatgtgatgttgga	12	6	0	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	337651	A	A	337651	2	1	205	1	0	0	0	0	0	0	0	1	17856	1368	48	4		4	ZNF141	4	337651	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08		337651	190816625	127	160785											
WHSC1	7468	broad.mit.edu	37	chr4	1976104	1976104	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaccaccacgcccagctaAttttttttgtatttttagta	5	11	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1976104	T	T	1976104	1	4	205	0	1	0	0	0	0	0	0	0	17489	116	4	5		5	WHSC1	4	1976104	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	1638453	1976104	189178172	128	160786											
AFAP1	60312	broad.mit.edu	37	chr4	7857263	7857263	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcataataaccttctgggagGgaggatgttggcaatggtgg	15	5	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7857263	A	A	7857263	2	1	205	1	0	0	0	0	0	0	0	1	353	1219	43	4		4	AFAP1	4	7857263	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	5881159	7857263	183297013	129	160787											
CPZ	8532	broad.mit.edu	37	chr4	8621204	8621204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgacccactgggaggtGccagctctttgggggaggcc	15	14	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8621204	T	T	8621204	3	4	205	1	0	0	0	0	1	0	0	0	3871	1319	46	3	1861	3	CPZ	4	8621204	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	763941	8621204	182533072	130	160788											
CCKAR	886	broad.mit.edu	37	chr4	26484573	26484573	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttattccactcagaatgCttttgaaaggaatgatttcc	6	8	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26484573	T	T	26484573	1	4	205	0	1	0	0	0	0	0	0	0	2908	812	28	4		4	CCKAR	4	26484573	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	17863369	26484573	164669703	131	160789											
CHRNA9	55584	broad.mit.edu	37	chr4	40339156	40339156	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattcctattgtgaagaAcaagtgtcctatcagtggaa	9	6	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40339156	T	T	40339156	1	4	205	0	1	0	0	0	0	0	0	0	3420	58	2	5		5	CHRNA9	4	40339156	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	13854583	40339156	150815120	132	160790											
GABRA2	2555	broad.mit.edu	37	chr4	46252306	46252306	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgttgctatacatcccaaAgataacatgggtctcaattc	6	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46252306	T	T	46252306	1	4	205	0	1	0	0	0	0	0	0	0	6221	87	3	5		5	GABRA2	4	46252306	3'UTR	SNP	A	TCGA-73-4662-01A-01D-1265-08	5913150	46252306	144901970	133	160791											
GABRB1	2560	broad.mit.edu	37	chr4	47322141	47322141	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttctctctcctctctatCagaatcacaaccacagctgc	3	15	5	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47322141	T	T	47322141	1	4	205	0	1	0	0	0	0	0	0	0	6226	841	29	4		4	GABRB1	4	47322141	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1069835	47322141	143832135	134	160792											
GABRB1	2560	broad.mit.edu	37	chr4	47408881	47408881	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggccctcagaaaaagGgagctagcaaacaagaccag	12	9	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47408881	C	C	47408881	3	2	205	1	0	0	0	0	1	0	0	0	6226	1233	43	4	1048	4	GABRB1	4	47408881	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	86740	47408881	143745395	135	160793											
ATP10D	57205	broad.mit.edu	37	chr4	47565645	47565645	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagggagtccctgaatctAtagaagctcttcacaaagcg	11	9	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47565645	T	T	47565645	3	4	205	1	0	0	0	0	1	0	0	0	1122	449	16	5	2770	5	ATP10D	4	47565645	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	156764	47565645	143588631	136	160794											
AASDH	132949	broad.mit.edu	37	chr4	57217624	57217624	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagaaacatcaattttgcCttaatataaaagagaaataa	4	6	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57217624	T	T	57217624	5	4	205	1	0	0	0	0	0	0	1	0	22	695	24	4	1744	4	AASDH	4	57217624	Splice_Site	SNP	C	TCGA-73-4662-01A-01D-1265-08	9651979	57217624	133936652	137	160795											
LPHN3	23284	broad.mit.edu	37	chr4	62641291	62641291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctctctgtcagttttaCagaggcctaccctttcccct	5	17	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62641291	A	A	62641291	1	1	205	0	1	0	0	0	0	0	0	0	9004	493	17	3		3	LPHN3	4	62641291	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	5423667	62641291	128512985	138	160796											
EREG	2069	broad.mit.edu	37	chr4	75230974	75230974	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctcccgccctgcccgtGcactctccgcagccgccctc	8	23	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75230974	T	T	75230974	1	4	205	0	1	0	0	0	0	0	0	0	5262	1334	46	3		3	EREG	4	75230974	5'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	12589683	75230974	115923302	139	160797											
DMP1	1758	broad.mit.edu	37	chr4	88583361	88583361	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggactctgatgacaccaTacaagccagtgaagagagtg	12	8	1	5			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88583361	C	C	88583361	3	2	205	1	0	0	0	0	1	0	0	0	4623	1406	49	5	449	5	DMP1	4	88583361	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	13352387	88583361	102570915	140	160798											
BMPR1B	658	broad.mit.edu	37	chr4	96070172	96070172	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatcatactgtctataagatCtggttttattttccccttta	4	8	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96070172	G	G	96070172	1	3	205	0	1	0	0	0	0	0	0	0	1476	928	32	4		4	BMPR1B	4	96070172	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	7486811	96070172	95084104	141	160799											
PDHA2	5161	broad.mit.edu	37	chr4	96762282	96762282	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaatggtaaacagcaagctCgccactgtggaagaattaaa	10	7	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96762282	A	A	96762282	2	1	205	1	0	0	0	0	0	0	0	1	11759	871	31	3		3	PDHA2	4	96762282	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	692110	96762282	94391994	142	160800											
MANBA	4126	broad.mit.edu	37	chr4	103650054	103650054	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgggaggcccccacagGccgagctcagatcacctgca	13	15	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103650054	A	A	103650054	1	1	205	0	1	0	0	0	0	0	0	0	9311	1218	42	4		4	MANBA	4	103650054	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	6887772	103650054	87504222	143	160801											
ANK2	287	broad.mit.edu	37	chr4	114254323	114254323	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcatttctgtgactacaCtgaagatgaattgaatgaaa	9	5	1	7			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114254323	A	A	114254323	3	1	205	1	0	0	0	0	1	0	0	0	621	565	20	3	3517	3	ANK2	4	114254323	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	10604269	114254323	76899953	144	160802											
MMAA	166785	broad.mit.edu	37	chr4	146560391	146560391	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctttcactcaagtactcatCtcggatcaggaatcccatgt	6	12	6	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146560391	G	G	146560391	3	3	205	1	0	0	0	0	1	0	0	0	9732	913	32	4	102	4	MMAA	4	146560391	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	32306068	146560391	44593885	145	160803											
DCLK2	166614	broad.mit.edu	37	chr4	151153986	151153986	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagagaatctcttggtatgTcatccctgctttttctgttc	7	11	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151153986	C	C	151153986	1	2	205	0	1	0	0	0	0	0	0	0	4325	1682	58	5		5	DCLK2	4	151153986	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	4593595	151153986	40000290	146	160804											
RAPGEF2	9693	broad.mit.edu	37	chr4	160275067	160275067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacacaggcacaataaagcGgaggggtggaaaggatgttt	15	5	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160275067	T	T	160275067	3	4	205	1	0	0	0	0	1	0	0	0	13152	1116	39	1	4123	1	RAPGEF2	4	160275067	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	9121081	160275067	30879209	147	160805											
ADCY2	108	broad.mit.edu	37	chr5	7820842	7820842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgcctgcatcaaccatGtctgttctcttgggaaccat	9	13	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7820842	T	T	7820842	1	4	205	0	1	0	0	0	0	0	0	0	294	1392	48	3		3	ADCY2	5	7820842	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08		7820842	173094418	148	160806											
MARCH6	10299	broad.mit.edu	37	chr5	10411648	10411648	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctttaaattttccactcaGggtaggtgctatacagactt	7	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10411648	A	A	10411648	3	1	205	1	0	0	0	0	1	0	0	0	9397	1014	35	4	1969	4	MARCH6	5	10411648	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2590806	10411648	170503612	149	160807											
CTNND2	1501	broad.mit.edu	37	chr5	10981975	10981975	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagctaaaagcaaaaggaaAacaaaagtttagcaaagaaa	8	4	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10981975	C	C	10981975	1	2	205	0	1	0	0	0	0	0	0	0	4054	29	1	5		5	CTNND2	5	10981975	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	570327	10981975	169933285	150	160808											
CTNND2	1501	broad.mit.edu	37	chr5	11159798	11159798	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggataatcaccgcgttGgtcagtactgctagggcatc	14	9	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11159798	T	T	11159798	2	4	205	1	0	0	0	0	0	0	0	1	4054	1335	47	2		2	CTNND2	5	11159798	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	177823	11159798	169755462	151	160809											
CDH12	1010	broad.mit.edu	37	chr5	21765020	21765020	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgtgcatattcatgtctgGacttataacttaaaacatgc	7	7	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21765020	A	A	21765020	1	1	205	0	1	0	0	0	0	0	0	0	3128	1189	41	4		4	CDH12	5	21765020	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	10605222	21765020	159150240	152	160810											
SKP2	6502	broad.mit.edu	37	chr5	36183971	36183971	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagctggggttaggatccGgttggactctgacatcggat	15	7	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36183971	T	T	36183971	3	4	205	1	0	0	0	0	1	0	0	0	14475	1116	39	1	1347	1	SKP2	5	36183971	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	14418951	36183971	144731289	153	160811											
GZMK	3003	broad.mit.edu	37	chr5	54329521	54329521	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataatcccttgagcaatcagCagttggtggttaaaaaacaa	8	7	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54329521	T	T	54329521	1	4	205	0	1	0	0	0	0	0	0	0	6983	725	25	4		4	GZMK	5	54329521	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	18145550	54329521	126585739	154	160812											
PPWD1	23398	broad.mit.edu	37	chr5	64875260	64875260	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatatttttaggtgtgtgcgGattttaggcaaacaagaaaa	10	3	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64875260	A	A	64875260	2	1	205	1	0	0	0	0	0	0	0	1	12515	1161	41	4		4	PPWD1	5	64875260	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	10545739	64875260	116040000	155	160813											
RASGRF2	5924	broad.mit.edu	37	chr5	80382859	80382859	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggaaggcgttctgaacaGgcgtgacgggtgcggtgccc	17	12	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80382859	A	A	80382859	1	1	205	0	1	0	0	0	0	0	0	0	13181	1015	35	4		4	RASGRF2	5	80382859	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	15507599	80382859	100532401	156	160814											
DMXL1	1657	broad.mit.edu	37	chr5	118533728	118533728	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctcgctctgtcatccgGgctggagtgcagtggcacaa	14	11	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118533728	C	C	118533728	1	2	205	0	1	0	0	0	0	0	0	0	4634	1247	43	4		4	DMXL1	5	118533728	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	38150869	118533728	62381532	157	160815											
PKD2L2	27039	broad.mit.edu	37	chr5	137225063	137225063	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttgtcgagtagctcgccGccctggaggagctgggggct	17	11	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137225063	T	T	137225063	1	4	205	0	1	0	0	0	0	0	0	0	12063	1102	38	3		3	PKD2L2	5	137225063	5'Flank	SNP	G	TCGA-73-4662-01A-01D-1265-08	18691335	137225063	43690197	158	160816											
PSD2	84249	broad.mit.edu	37	chr5	139218122	139218122	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtactggtgccttctcaGtgccaggcccagtgctgggt	15	11	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139218122	T	T	139218122	1	4	205	0	1	0	0	0	0	0	0	0	12753	1044	36	3		3	PSD2	5	139218122	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1993059	139218122	41697138	159	160817											
IK	3550	broad.mit.edu	37	chr5	140031639	140031639	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctggggctgtggcaatAttttgctatcagtgaatttc	11	6	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140031639	G	G	140031639	1	3	205	0	1	0	0	0	0	0	0	0	7678	464	16	5		5	IK	5	140031639	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	813517	140031639	40883621	160	160818											
PCDHA10	56139	broad.mit.edu	37	chr5	140235739	140235739	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctccactactcagtctacGaggaggccagacacggcacc	10	15	2	1	rs147800828		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140235739	A	A	140235739	3	1	205	1	0	0	0	0	1	0	0	0	11614	1059	37	4	108	4	PCDHA10	5	140235739	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	204100	140235739	40679521	161	160819											
PCDHB7	56129	broad.mit.edu	37	chr5	140554630	140554630	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgacatctggtggacttgagCggcaccgggaccctatccca	12	14	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140554630	G	G	140554630	3	3	205	1	0	0	0	0	1	0	0	0	11641	767	27	4	2216	4	PCDHB7	5	140554630	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	318891	140554630	40360630	162	160820											
PCDHB16	57717	broad.mit.edu	37	chr5	140562314	140562314	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggttgacagagatgtcCacccgcaaggccaggatcat	13	10	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140562314	A	A	140562314	2	1	205	1	0	0	0	0	0	0	0	1	11635	581	21	2		2	PCDHB16	5	140562314	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	7684	140562314	40352946	163	160821											
PCDHB10	56126	broad.mit.edu	37	chr5	140573632	140573632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcacctgcccctcgcctccCtggtctccatcaacgcggac	8	21	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140573632	A	A	140573632	3	1	205	1	0	0	0	0	1	0	0	0	11629	680	24	2	1509	2	PCDHB10	5	140573632	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	11318	140573632	40341628	164	160822											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720308	140720308	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggctacctggtgaccaaGgtggtggcggtggacagaga	17	10	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140720308	T	T	140720308	3	4	205	1	0	0	0	0	1	0	0	0	11648	991	35	2	1772	2	PCDHGA2	5	140720308	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	146676	140720308	40194952	165	160823											
NDFIP1	80762	broad.mit.edu	37	chr5	141520014	141520014	+	Intron	DEL	A	-	-													caagagcgaaactccgtctcAaaaaaaaaaaaaaaaagaat							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141520014	-	-	141520014	6	5	205	0	1	1	0	1	0	0	0	0	10340	145	5	0		0	NDFIP1	5	141520014	Intron	DEL	A	TCGA-73-4662-01A-01D-1265-08	799706	141520014	39395246	166	160824											
ARHGEF37	389337	broad.mit.edu	37	chr5	149008426	149008426	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtaccatgtggtccccaGtgcagaggagctcagaaggc	14	11	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149008426	A	A	149008426	3	1	205	1	0	0	0	0	1	0	0	0	908	1029	36	4	1757	4	ARHGEF37	5	149008426	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	7488412	149008426	31906834	167	160825											
FAT2	2196	broad.mit.edu	37	chr5	150930994	150930994	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaggccttccatctcctCtcaatacaggggtccccagc	8	15	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150930994	A	A	150930994	1	1	205	0	1	0	0	0	0	0	0	0	5747	928	32	3		3	FAT2	5	150930994	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1922568	150930994	29984266	168	160826											
EBF1	1879	broad.mit.edu	37	chr5	158422364	158422364	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtggaatagtcactgcAggggaaacttttaggcacag	12	7	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158422364	T	T	158422364	1	4	205	0	1	0	0	0	0	0	0	0	4920	203	7	5		5	EBF1	5	158422364	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	7491370	158422364	22492896	169	160827											
GABRA6	2559	broad.mit.edu	37	chr5	161128675	161128675	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaccagtaaaatagaccagTattctcgaattctcttccca	5	12	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161128675	G	G	161128675	3	3	205	1	0	0	0	0	1	0	0	0	6225	1638	57	5	1292	5	GABRA6	5	161128675	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	2706311	161128675	19786585	170	160828											
DOCK2	1794	broad.mit.edu	37	chr5	169126310	169126310	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgaggcgtgtggaggggcTggggagattcatgggacccc	19	9	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169126310	C	C	169126310	1	2	205	0	1	0	0	0	0	0	0	0	4727	1595	55	5		5	DOCK2	5	169126310	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	7997635	169126310	11788950	171	160829											
SH3PXD2B	285590	broad.mit.edu	37	chr5	171765673	171765673	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtgtcatcctggcccccCaaagagttggagagaaaagg	13	11	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171765673	T	T	171765673	2	4	205	1	0	0	0	0	0	0	0	1	14370	593	21	4		4	SH3PXD2B	5	171765673	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	2639363	171765673	9149587	172	160830											
CNOT6	57472	broad.mit.edu	37	chr5	179996154	179996154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacaacttattcttgtgGctaacgcccacatgcattgg	7	10	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179996154	T	T	179996154	3	4	205	1	0	0	0	0	1	0	0	0	3654	1203	42	3	1106	3	CNOT6	5	179996154	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	8230481	179996154	919106	173	160831											
BTNL3	10917	broad.mit.edu	37	chr5	180424111	180424111	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagagagagagagagaaaaGgatgtatgtgtgttatgggt	17	0	0	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180424111	A	A	180424111	1	1	205	0	1	0	0	0	0	0	0	0	1576	1015	35	4		4	BTNL3	5	180424111	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	427957	180424111	491149	174	160832											
GMDS	2762	broad.mit.edu	37	chr6	2117864	2117864	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctttagctaatgtttagcTttatgaaaaaaatgatttgt	6	3	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2117864	A	A	2117864	1	1	205	0	1	0	0	0	0	0	0	0	6550	1624	56	5		5	GMDS	6	2117864	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08		2117864	168997203	175	160833											
CDYL	9425	broad.mit.edu	37	chr6	4892352	4892352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaggtatcaagatcctcGtgcctaaaagccccgttaag	9	11	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4892352	T	T	4892352	3	4	205	1	0	0	0	0	1	0	0	0	3215	1145	40	3	436	3	CDYL	6	4892352	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2774488	4892352	166222715	176	160834											
DSP	1832	broad.mit.edu	37	chr6	7563904	7563904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaaaggaggcttagaaGggccactcttttctatacaa	10	7	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7563904	T	T	7563904	1	4	205	0	1	0	0	0	0	0	0	0	4821	1015	35	2		2	DSP	6	7563904	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2671552	7563904	163551163	177	160835											
NOL7	51406	broad.mit.edu	37	chr6	13617987	13617988	+	Intron	INS	-	T	T													cattgcagtcagtggttttgINSttttttttccttagcatcaa							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13617988	T	T	13617987	6	5	205	0	1	1	1	0	0	0	0	0	10621	1392	48	0		0	NOL7	6	13617987	Intron	INS	-	TCGA-73-4662-01A-01D-1265-08	6054083	13617987	157497080	178	160836											
CDKAL1	54901	broad.mit.edu	37	chr6	20546821	20546821	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagacagagtcttgctctGtcgcccaggctggagtgcag	14	10	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20546821	A	A	20546821	1	1	205	0	1	0	0	0	0	0	0	0	3182	1392	48	4		4	CDKAL1	6	20546821	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	6928834	20546821	150568246	179	160837											
DCDC2	51473	broad.mit.edu	37	chr6	24205198	24205198	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaaaaacactataattgtCttacacatattttttaaggc	3	6	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24205198	G	G	24205198	1	3	205	0	1	0	0	0	0	0	0	0	4318	928	32	4		4	DCDC2	6	24205198	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	3658377	24205198	146909869	180	160838											
HIST1H3D	8351	broad.mit.edu	37	chr6	26199486	26199486	+	5'Flank	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacattttgaattcttaaaAacgatgttaagcaatgaaga	8	4	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26199486	C	C	26199486	1	2	205	0	1	0	0	0	0	0	0	0	7225	29	1	5		5	HIST1H3D	6	26199486	5'Flank	SNP	A	TCGA-73-4662-01A-01D-1265-08	1994288	26199486	144915581	181	160839											
CNPY3	10695	broad.mit.edu	37	chr6	42905438	42905438	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagctccgcctgccatatCtggtcgcttcttccagggca	12	14	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42905438	T	T	42905438	1	4	205	0	1	0	0	0	0	0	0	0	3661	928	32	4		4	CNPY3	6	42905438	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	16705952	42905438	128209629	182	160840											
CNPY3	10695	broad.mit.edu	37	chr6	42905451	42905451	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccatatctggtcgcttcttCcagggcatgtcagagacctt	10	12	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42905451	G	G	42905451	1	3	205	0	1	0	0	0	0	0	0	0	3661	870	30	4		4	CNPY3	6	42905451	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	13	42905451	128209616	183	160841											
TJAP1	93643	broad.mit.edu	37	chr6	43471199	43471199	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgtggagctgaccaacAagctgctggatgccaagaac	12	9	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43471199	G	G	43471199	3	3	205	1	0	0	0	0	1	0	0	0	16051	131	5	5	470	5	TJAP1	6	43471199	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	565748	43471199	127643868	184	160842											
GPR115	221393	broad.mit.edu	37	chr6	47682229	47682229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtctcaatcctaagcttGgttctttgcctgatcattga	8	10	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47682229	T	T	47682229	3	4	205	1	0	0	0	0	1	0	0	0	6697	1339	47	2	1266	2	GPR115	6	47682229	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	4211030	47682229	123432838	185	160843											
CRISP3	10321	broad.mit.edu	37	chr6	49699034	49699034	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatgttccaaggttagtatCagtcaccaaatatacatgag	7	7	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49699034	A	A	49699034	1	1	205	0	1	0	0	0	0	0	0	0	3913	841	29	3		3	CRISP3	6	49699034	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2016805	49699034	121416033	186	160844											
CRISP1	167	broad.mit.edu	37	chr6	49819667	49819667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaataaaactcagtaaacaCcattactattattgcaatca	2	8	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49819667	A	A	49819667	1	1	205	0	1	0	0	0	0	0	0	0	3911	522	18	3		3	CRISP1	6	49819667	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	120633	49819667	121295400	187	160845											
GFRAL	389400	broad.mit.edu	37	chr6	55196432	55196432	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattttccataattctgctCtttatcattaataacttaga	2	7	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55196432	G	G	55196432	1	3	205	0	1	0	0	0	0	0	0	0	6415	928	32	4		4	GFRAL	6	55196432	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	5376765	55196432	115918635	188	160846											
EYS	346007	broad.mit.edu	37	chr6	66063453	66063453	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggtgttgatgaattaGgtaaacattcttcaaaaacc	9	6	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66063453	T	T	66063453	3	4	205	1	0	0	0	0	1	0	0	0	5375	991	35	2	8179	2	EYS	6	66063453	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	10867021	66063453	105051614	189	160847											
MTO1	25821	broad.mit.edu	37	chr6	74207313	74207313	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctatgtaaaagggaacAcctacccaacccatctcatg	5	15	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74207313	G	G	74207313	1	3	205	0	1	0	0	0	0	0	0	0	10047	174	6	5		5	MTO1	6	74207313	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	8143860	74207313	96907754	190	160848											
PRSS35	167681	broad.mit.edu	37	chr6	84233922	84233922	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctttcagtggacccgggtCaagaatacccacattccgaa	8	13	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84233922	A	A	84233922	2	1	205	1	0	0	0	0	0	0	0	1	12730	813	29	3		3	PRSS35	6	84233922	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	10026609	84233922	86881145	191	160849											
RNGTT	8732	broad.mit.edu	37	chr6	89638989	89638989	+	Intron	DEL	A	-	-													caacaagcccattttaacctAaaaaaaaaaaaaaatgaaag					rs111616936		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89638989	-	-	89638989	6	5	205	0	1	1	0	1	0	0	0	0	13614	377	13	0		0	RNGTT	6	89638989	Intron	DEL	A	TCGA-73-4662-01A-01D-1265-08	5405067	89638989	81476078	192	160850											
C6orf167	253714	broad.mit.edu	37	chr6	97726798	97726798	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attttaaaaatgtaaggtgaGagttaattttagaacacttt	7	2	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97726798	C	C	97726798	1	2	205	0	1	0	0	0	0	0	0	0	2365	957	33	4		4	C6orf167	6	97726798	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	8087809	97726798	73388269	193	160851											
HS3ST5	222537	broad.mit.edu	37	chr6	114379241	114379241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctccttggaagcgttgCccttccggaactcgtgcagc	11	15	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114379241	A	A	114379241	3	1	205	1	0	0	0	0	1	0	0	0	7435	739	26	3	823	3	HS3ST5	6	114379241	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	16652443	114379241	56735826	194	160852											
FAM162B	221303	broad.mit.edu	37	chr6	117086432	117086432	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcccctgcagcgaaagcAacccagatggacgcgggaac	11	14	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117086432	C	C	117086432	1	2	205	0	1	0	0	0	0	0	0	0	5521	145	5	5		5	FAM162B	6	117086432	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	2707191	117086432	54028635	195	160853											
HEY2	23493	broad.mit.edu	37	chr6	126080924	126080924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaccttaccgaccctgGgggacagaagttggagcttt	11	9	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126080924	T	T	126080924	3	4	205	1	0	0	0	0	1	0	0	0	7146	1241	43	2	1008	2	HEY2	6	126080924	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	8994492	126080924	45034143	196	160854											
LAMA2	3908	broad.mit.edu	37	chr6	129250739	129250739	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgcagttctggagccccaGatgccgcaaaagcgcttcca	10	15	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129250739	C	C	129250739	1	2	205	0	1	0	0	0	0	0	0	0	8678	957	33	4		4	LAMA2	6	129250739	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	3169815	129250739	41864328	197	160855											
C6orf192	116843	broad.mit.edu	37	chr6	133100440	133100440	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagagagacagagtaggatcGaggaagccaaaacacgagct	13	7	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133100440	T	T	133100440	2	4	205	1	0	0	0	0	0	0	0	1	2372	1045	37	3		3	C6orf192	6	133100440	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	3849701	133100440	38014627	198	160856											
VTA1	51534	broad.mit.edu	37	chr6	142468431	142468431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcggagtagagatggccGcgcttgcaccgctgcccccg	14	14	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142468431	T	T	142468431	3	4	205	1	0	0	0	0	1	0	0	0	17360	1087	38	3	9	3	VTA1	6	142468431	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	9367991	142468431	28646636	199	160857											
GRM1	2911	broad.mit.edu	37	chr6	146673535	146673535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgatgccatgaagcccatcGacggcagcaagctgctggac	13	13	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146673535	T	T	146673535	3	4	205	1	0	0	0	0	1	0	0	0	6862	1058	37	3	1350	3	GRM1	6	146673535	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	4205104	146673535	24441532	200	160858											
PLEKHG1	57480	broad.mit.edu	37	chr6	151152182	151152182	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggaggagatgactccCtttgggtcatccatagagtt	14	8	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151152182	A	A	151152182	2	1	205	1	0	0	0	0	0	0	0	1	12163	668	24	2		2	PLEKHG1	6	151152182	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	4478647	151152182	19962885	201	160859											
C6orf97	80129	broad.mit.edu	37	chr6	151869438	151869438	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaattgctttctcttcaGcttagagacctgcgcaaaga	8	10	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151869438	T	T	151869438	5	4	205	1	0	0	0	0	0	0	1	0	2399	985	34	3	606	3	C6orf97	6	151869438	Splice_Site	SNP	G	TCGA-73-4662-01A-01D-1265-08	717256	151869438	19245629	202	160860											
SERAC1	84947	broad.mit.edu	37	chr6	158549110	158549110	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagaggtgggagaacaaagTaaaaaatactcagtatataa	10	3	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158549110	C	C	158549110	1	2	205	0	1	0	0	0	0	0	0	0	14187	1653	57	5		5	SERAC1	6	158549110	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	6679672	158549110	12565957	203	160861											
MAP3K4	4216	broad.mit.edu	37	chr6	161522878	161522878	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcgcagatctttcattttAagttctattgaattgatagc	6	7	4	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161522878	T	T	161522878	1	4	205	0	1	0	0	0	0	0	0	0	9344	377	13	5		5	MAP3K4	6	161522878	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	2973768	161522878	9592189	204	160862											
THBS2	7058	broad.mit.edu	37	chr6	169641917	169641917	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagccccgagagctcctgGaccatgtttcccagctcctc	10	16	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169641917	T	T	169641917	2	4	205	1	0	0	0	0	0	0	0	1	15977	1161	41	3		3	THBS2	6	169641917	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	8119039	169641917	1473150	205	160863											
PAPOLB	56903	broad.mit.edu	37	chr7	4900091	4900091	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagatcaatgctgagaatttCagaattatctggctttttta	8	5	3	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4900091	A	A	4900091	4	1	205	1	0	0	0	0	0	1	0	0	11524	835	29	3	566	3	PAPOLB	7	4900091	Nonsense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08		4900091	154238572	206	160864											
THSD7A	221981	broad.mit.edu	37	chr7	11501720	11501720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcggcccccgttggctgGcagctgaatgatgacccgat	13	13	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11501720	T	T	11501720	3	4	205	1	0	0	0	0	1	0	0	0	16002	1203	42	3	2626	3	THSD7A	7	11501720	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	6601629	11501720	147636943	207	160865											
TMEM195	392636	broad.mit.edu	37	chr7	15584551	15584551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctcctgaaaaatagactGgaagataaaattcacaatca	6	7	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15584551	T	T	15584551	1	4	205	0	1	0	0	0	0	0	0	0	16240	1363	47	2		2	TMEM195	7	15584551	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	4082831	15584551	143554112	208	160866											
TMEM195	392636	broad.mit.edu	37	chr7	15599801	15599801	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacaccagctgagattgaCgttaaagcatcatccaggcg	10	10	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15599801	A	A	15599801	2	1	205	1	0	0	0	0	0	0	0	1	16240	523	19	3		3	TMEM195	7	15599801	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	15250	15599801	143538862	209	160867											
HDAC9	9734	broad.mit.edu	37	chr7	18767433	18767433	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctaaatgccccgttcttGtaggattaaccgatttaaat	8	8	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18767433	A	A	18767433	1	1	205	0	1	0	0	0	0	0	0	0	7081	1392	48	4		4	HDAC9	7	18767433	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	3167632	18767433	140371230	210	160868											
DNAH11	8701	broad.mit.edu	37	chr7	21745109	21745109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggaactgttggctgtgcGgcactcggtctttgtagttg	15	7	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21745109	T	T	21745109	3	4	205	1	0	0	0	0	1	0	0	0	4639	1116	39	1	6676	1	DNAH11	7	21745109	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2977676	21745109	137393554	211	160869											
GPNMB	10457	broad.mit.edu	37	chr7	23306249	23306249	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtaggtaaggctgaagatGatgaccagtgaggaaggatg	16	3	0	5			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23306249	A	A	23306249	1	1	205	0	1	0	0	0	0	0	0	0	6685	1305	45	4		4	GPNMB	7	23306249	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1561140	23306249	135832414	212	160870											
STK31	56164	broad.mit.edu	37	chr7	23750113	23750113	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggggtgccagatgcccCagtttttgagtgcatgcagg	15	9	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23750113	T	T	23750113	1	4	205	0	1	0	0	0	0	0	0	0	15414	609	21	4		4	STK31	7	23750113	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	443864	23750113	135388550	213	160871											
LSM5	23658	broad.mit.edu	37	chr7	32528799	32528799	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcacaaatatactgattgtCtatagttcttatgttattac	4	6	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32528799	A	A	32528799	1	1	205	0	1	0	0	0	0	0	0	0	9146	928	32	3		3	LSM5	7	32528799	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	8778686	32528799	126609864	214	160872											
VPS41	27072	broad.mit.edu	37	chr7	38767996	38767996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaccagcattccactgagCaggatggaagccacaacact	9	13	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38767996	A	A	38767996	1	1	205	0	1	0	0	0	0	0	0	0	17337	725	25	3		3	VPS41	7	38767996	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	6239197	38767996	120370667	215	160873											
C7orf10	79783	broad.mit.edu	37	chr7	40193438	40193438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatatgccattaagaactgGctctgtggatattattgtgg	10	6	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40193438	A	A	40193438	1	1	205	0	1	0	0	0	0	0	0	0	2401	1218	42	4		4	C7orf10	7	40193438	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1425442	40193438	118945225	216	160874											
INHBA	3624	broad.mit.edu	37	chr7	41739733	41739733	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgcgttcagaagcgccgcCttgggtaccggctgggtgac	15	12	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41739733	T	T	41739733	2	4	205	1	0	0	0	0	0	0	0	1	7811	680	24	4		4	INHBA	7	41739733	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	1546295	41739733	117398930	217	160875											
CAMK2B	816	broad.mit.edu	37	chr7	44272474	44272474	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtttgaggctcctacagaaGaaggaagacacagaggaagg	15	6	0	5			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44272474	T	T	44272474	1	4	205	0	1	0	0	0	0	0	0	0	2626	957	33	3		3	CAMK2B	7	44272474	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2532741	44272474	114866189	218	160876											
PKD1L1	168507	broad.mit.edu	37	chr7	47847825	47847825	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggcctctatctgcatgGccctgagcacaccgtgtacc	10	15	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47847825	T	T	47847825	1	4	205	0	1	0	0	0	0	0	0	0	12059	1218	42	3		3	PKD1L1	7	47847825	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	3575351	47847825	111290838	219	160877											
POM121	9883	broad.mit.edu	37	chr7	72397319	72397319	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attaaaatatcttacagctaGaatcttgtctttcattgtag	5	6	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72397319	T	T	72397319	1	4	205	0	1	0	0	0	0	0	0	0	12334	957	33	3		3	POM121	7	72397319	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	24549494	72397319	86741344	220	160878											
ELN	2006	broad.mit.edu	37	chr7	73480297	73480297	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggccttggaggtgtcCtagggggtgccgggcagttc	18	10	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73480297	T	T	73480297	2	4	205	1	0	0	0	0	0	0	0	1	5113	680	24	4		4	ELN	7	73480297	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	1082978	73480297	85658366	221	160879											
SLC25A13	10165	broad.mit.edu	37	chr7	95814398	95814398	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaacaaaaatgaccataCattaactttaaacattactc	1	8	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95814398	A	A	95814398	1	1	205	0	1	0	0	0	0	0	0	0	14589	493	17	3		3	SLC25A13	7	95814398	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	22334101	95814398	63324265	222	160880											
AGFG2	3268	broad.mit.edu	37	chr7	100161345	100161345	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctgggtccctcgttcctcAtgtcaggaaaaaactatatc	9	11	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100161345	T	T	100161345	1	4	205	0	1	0	0	0	0	0	0	0	381	232	8	5		5	AGFG2	7	100161345	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	4346947	100161345	58977318	223	160881											
MLL5	55904	broad.mit.edu	37	chr7	104745898	104745898	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctctagcacttggttaatGaatggttaagtgagaagaat	10	4	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104745898	C	C	104745898	3	2	205	1	0	0	0	0	1	0	0	0	9717	1291	45	4	2271	4	MLL5	7	104745898	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	4584553	104745898	54392765	224	160882											
MET	4233	broad.mit.edu	37	chr7	116339807	116339807	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggctaaaggaaacgaaAgatggttttatgtttttgac	11	3	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116339807	G	G	116339807	2	3	205	1	0	0	0	0	0	0	0	1	9578	69	3	5		5	MET	7	116339807	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	11593909	116339807	42798856	225	160883											
CFTR	1080	broad.mit.edu	37	chr7	117242773	117242773	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgaaattgtgtgtaccttGatattggtacacacatcaaa	8	6	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117242773	T	T	117242773	1	4	205	0	1	0	0	0	0	0	0	0	3324	1305	45	3		3	CFTR	7	117242773	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	902966	117242773	41895890	226	160884											
PTPRZ1	5803	broad.mit.edu	37	chr7	121682660	121682660	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttcttggtcttctcttcAgtgctggagttggaagaaca	10	7	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121682660	C	C	121682660	5	2	205	1	0	0	0	0	0	0	1	0	12922	202	7	5	5886	5	PTPRZ1	7	121682660	Splice_Site	SNP	A	TCGA-73-4662-01A-01D-1265-08	4439887	121682660	37456003	227	160885											
CADPS2	93664	broad.mit.edu	37	chr7	121985606	121985606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatctatggtgtcagcataCcttgcaagggaagctactta	9	8	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121985606	A	A	121985606	1	1	205	0	1	0	0	0	0	0	0	0	2597	522	18	3		3	CADPS2	7	121985606	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	302946	121985606	37153057	228	160886											
RNF133	168433	broad.mit.edu	37	chr7	122338100	122338100	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catttgcaaatggggcatgtCccatggggtaaaatccaggg	13	8	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122338100	A	A	122338100	2	1	205	1	0	0	0	0	0	0	0	1	13550	842	30	3		3	RNF133	7	122338100	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	352494	122338100	36800563	229	160887											
TAS2R16	50833	broad.mit.edu	37	chr7	122635134	122635134	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaggatgaaaggaataacCaatgcaactgtatgagcctg	10	7	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122635134	T	T	122635134	2	4	205	1	0	0	0	0	0	0	0	1	15688	593	21	4		4	TAS2R16	7	122635134	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	297034	122635134	36503529	230	160888											
PRKAG2	51422	broad.mit.edu	37	chr7	151261298	151261298	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggttattgtatgttttctCagcagcaagattctgtaatg	9	5	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151261298	A	A	151261298	4	1	205	1	0	0	0	0	0	1	0	0	12607	835	29	3	271	3	PRKAG2	7	151261298	Nonsense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	28626164	151261298	7877365	231	160889											
RNF32	140545	broad.mit.edu	37	chr7	156468537	156468537	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgagatcacagaagaggaaTgggagaaaatccaagtgcag	13	5	1	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156468537	A	A	156468537	3	1	205	1	0	0	0	0	1	0	0	0	13599	1464	51	5	858	5	RNF32	7	156468537	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	5207239	156468537	2670126	232	160890											
FAM86B1	85002	broad.mit.edu	37	chr8	12040325	12040325	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgagcagcgcctcccagtGgccagaagctgaaatgacgg	13	12	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12040325	T	T	12040325	1	4	205	0	1	0	0	0	0	0	0	0	5697	1363	47	2		2	FAM86B1	8	12040325	3'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08		12040325	134323697	233	160891											
KIF13B	23303	broad.mit.edu	37	chr8	29023195	29023195	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacctgtgcaatctcctccGttttccttaatttctcctcc	4	15	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29023195	A	A	29023195	3	1	205	1	0	0	0	0	1	0	0	0	8345	1145	40	4	4343	4	KIF13B	8	29023195	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	16982870	29023195	117340827	234	160892											
KIF13B	23303	broad.mit.edu	37	chr8	29023330	29023330	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgaaatgtctagaagatGccctggaaaaagaagtggcc	11	7	2	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29023330	A	A	29023330	1	1	205	0	1	0	0	0	0	0	0	0	8345	1334	46	4		4	KIF13B	8	29023330	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	135	29023330	117340692	235	160893											
KCNB2	9312	broad.mit.edu	37	chr8	73480420	73480420	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaagaacaaatgaacgaaGaactgaggcgagaggcagag	13	5	0	6			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73480420	C	C	73480420	3	2	205	1	0	0	0	0	1	0	0	0	8083	943	33	4	453	4	KCNB2	8	73480420	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	44457090	73480420	72883602	236	160894											
ZFHX4	79776	broad.mit.edu	37	chr8	77617093	77617093	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgtccaaagatgtccCtaacaatgtggacttgtcca	9	10	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77617093	G	G	77617093	3	3	205	1	0	0	0	0	1	0	0	0	17761	681	24	4	772	4	ZFHX4	8	77617093	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	4136673	77617093	68746929	237	160895											
PTDSS1	9791	broad.mit.edu	37	chr8	97299302	97299302	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctactcttcctgaatttCgagcaggttaaatctctaat	5	10	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97299302	A	A	97299302	3	1	205	1	0	0	0	0	1	0	0	0	12842	883	31	3	383	3	PTDSS1	8	97299302	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	19682209	97299302	49064720	238	160896											
CSMD3	114788	broad.mit.edu	37	chr8	113651094	113651094	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgtgatcagtaagtaGtcatgatggtcttccaaatg	9	7	4	2	rs145905619		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113651094	A	A	113651094	2	1	205	1	0	0	0	0	0	0	0	1	3980	1020	36	4		4	CSMD3	8	113651094	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	16351792	113651094	32712928	239	160897											
DENND3	22898	broad.mit.edu	37	chr8	142195205	142195205	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctacagcagaagtgtttcCtcctaacagttttgtgctgc	9	10	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142195205	T	T	142195205	1	4	205	0	1	0	0	0	0	0	0	0	4472	696	24	4		4	DENND3	8	142195205	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	28544111	142195205	4168817	240	160898											
PLEC	5339	broad.mit.edu	37	chr8	145010135	145010143	+	In_Frame_Del	DEL	CTTGGCCGT	-	-													gaccacagcagcagcttctcCttggccgtcatgtcctccga							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145010143	-	-	145010135	7	5	205	1	0	1	0	1	0	0	0	0	12147	680	24	0	13268	0	PLEC	8	145010135	In_Frame_Del	DEL	CTTGGCCGT	TCGA-73-4662-01A-01D-1265-08	2814930	145010135	1353887	241	160899											
GLIS3	169792	broad.mit.edu	37	chr9	4286471	4286471	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatatccaatgtcactaAtgactcctttcaggcaaagt	5	10	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4286471	T	T	4286471	1	4	205	0	1	0	0	0	0	0	0	0	6511	116	4	5		5	GLIS3	9	4286471	5'UTR	SNP	A	TCGA-73-4662-01A-01D-1265-08		4286471	136926960	242	160900											
PSIP1	11168	broad.mit.edu	37	chr9	15472678	15472678	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgttttcgatctgctgctTctttctcatgttggcctttc	8	11	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15472678	G	G	15472678	3	3	205	1	0	0	0	0	1	0	0	0	12769	1783	62	5	720	5	PSIP1	9	15472678	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	11186207	15472678	125740753	243	160901											
BNC2	54796	broad.mit.edu	37	chr9	16437347	16437347	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctctcaatgaaagtccttAtatctgagtctgtctttgaa	7	8	4	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16437347	T	T	16437347	3	4	205	1	0	0	0	0	1	0	0	0	1481	449	16	5	2462	5	BNC2	9	16437347	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	964669	16437347	124776084	244	160902											
SLC24A2	25769	broad.mit.edu	37	chr9	19550264	19550264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctcctcctcatcagcGgtctgtggtagaaaaagagg	12	10	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19550264	T	T	19550264	2	4	205	1	0	0	0	0	0	0	0	1	14580	1103	39	1		1	SLC24A2	9	19550264	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	3112917	19550264	121663167	245	160903											
UBAP2	55833	broad.mit.edu	37	chr9	33943708	33943708	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggcaagaagaaggagtgaGaaacaaggagaaaataggct	14	4	0	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33943708	C	C	33943708	1	2	205	0	1	0	0	0	0	0	0	0	16963	957	33	4		4	UBAP2	9	33943708	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	14393444	33943708	107269723	246	160904											
SIT1	27240	broad.mit.edu	37	chr9	35649866	35649866	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggctgcaggctggctGttggcataggcctgatccgg	16	11	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35649866	T	T	35649866	3	4	205	1	0	0	0	0	1	0	0	0	14457	1368	48	3	24	3	SIT1	9	35649866	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1706158	35649866	105563565	247	160905											
TLN1	7094	broad.mit.edu	37	chr9	35710595	35710595	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaagccacaaagtgcctttGaggctgtggaaatggcatct	12	8	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35710595	A	A	35710595	3	1	205	1	0	0	0	0	1	0	0	0	16070	1294	45	4	3436	4	TLN1	9	35710595	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	60729	35710595	105502836	248	160906											
KIF27	55582	broad.mit.edu	37	chr9	86503413	86503413	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatctatgtaccttcattctCcaaatctgacttttgtgttt	5	9	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86503413	G	G	86503413	3	3	205	1	0	0	0	0	1	0	0	0	8366	864	30	4	2175	4	KIF27	9	86503413	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	50792818	86503413	54710018	249	160907											
PTCH1	5727	broad.mit.edu	37	chr9	98209232	98209232	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccggggcctctcctcgcattCcacgtcctgcagctcaatga	9	17	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98209232	A	A	98209232	4	1	205	1	0	0	0	0	0	1	0	0	12836	864	30	3	41	3	PTCH1	9	98209232	Nonsense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	11705819	98209232	43004199	250	160908											
OR13C4	138804	broad.mit.edu	37	chr9	107288692	107288692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttgtctttcccaaggaGgtcctgggacttaggttttg	12	8	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107288692	T	T	107288692	3	4	205	1	0	0	0	0	1	0	0	0	11030	1000	35	2	159	2	OR13C4	9	107288692	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	9079460	107288692	33924739	251	160909											
SVEP1	79987	broad.mit.edu	37	chr9	113265485	113265485	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcggctggcggagatgaGgacatgttcttactatgtaa	13	6	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113265485	A	A	113265485	3	1	205	1	0	0	0	0	1	0	0	0	15538	1000	35	4	9571	4	SVEP1	9	113265485	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	5976793	113265485	27947946	252	160910											
TTC16	158248	broad.mit.edu	37	chr9	130479235	130479235	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagccacgtgttccaaaGcatctgtgatgtaaaaccaa	8	11	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130479235	T	T	130479235	3	4	205	1	0	0	0	0	1	0	0	0	16809	971	34	3	137	3	TTC16	9	130479235	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	17213750	130479235	10734196	253	160911											
GOLGA2	2801	broad.mit.edu	37	chr9	131028029	131028029	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctaaaggcctgtcaaagTgccaggttgaaggatgatgg	13	9	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131028029	A	A	131028029	1	1	205	0	1	0	0	0	0	0	0	0	6616	1711	59	5		5	GOLGA2	9	131028029	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	548794	131028029	10185402	254	160912											
FCN1	2219	broad.mit.edu	37	chr9	137805525	137805525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtcctggtcagccccaGtggctccctgagcacagaat	10	14	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137805525	T	T	137805525	1	4	205	0	1	0	0	0	0	0	0	0	5848	1044	36	3		3	FCN1	9	137805525	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	6777496	137805525	3407906	255	160913											
DIP2C	22982	broad.mit.edu	37	chr10	395293	395293	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggggtagaccaaggccacGtggtcgccgtcctgaaggtg	18	10	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	395293	A	A	395293	2	1	205	1	0	0	0	0	0	0	0	1	4569	1136	40	4		4	DIP2C	10	395293	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08		395293	135139454	256	160914											
AKR1C2	1646	broad.mit.edu	37	chr10	5043657	5043657	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catagaactgccacctccacAcaatcacaataaatacatgt	3	13	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5043657	G	G	5043657	1	3	205	0	1	0	0	0	0	0	0	0	470	174	6	5		5	AKR1C2	10	5043657	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	4648364	5043657	130491090	257	160915											
ITIH5	80760	broad.mit.edu	37	chr10	7618929	7618929	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cactgagctggggggataatCgatgcggatgtcagagagga	17	6	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7618929	T	T	7618929	3	4	205	1	0	0	0	0	1	0	0	0	7977	884	31	4	1506	4	ITIH5	10	7618929	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	2575272	7618929	127915818	258	160916											
GATA3	2625	broad.mit.edu	37	chr10	8111435	8111435	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctctccccactctcaGtctgcagccaggagagcagg	9	17	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8111435	T	T	8111435	5	4	205	1	0	0	0	0	0	0	1	0	6317	1043	36	3	938	3	GATA3	10	8111435	Splice_Site	SNP	G	TCGA-73-4662-01A-01D-1265-08	492506	8111435	127423312	259	160917											
CUBN	8029	broad.mit.edu	37	chr10	16970156	16970156	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatttgaactcattacTcttgtgaaaggatgcattga	7	5	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16970156	C	C	16970156	3	2	205	1	0	0	0	0	1	0	0	0	4084	1565	54	5	4708	5	CUBN	10	16970156	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	8858721	16970156	118564591	260	160918											
MRC1	4360	broad.mit.edu	37	chr10	17927574	17927574	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtctatgcttgcagattttAcctatttcagactgagctga	9	8	2	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17927574	T	T	17927574	1	4	205	0	1	0	0	0	0	0	0	0	9850	406	14	5		5	MRC1	10	17927574	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	957418	17927574	117607173	261	160919											
MLLT10	8028	broad.mit.edu	37	chr10	22022812	22022812	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtggagttcagcaggtcaAtggcgtgacagtgggggcac	18	7	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22022812	G	G	22022812	3	3	205	1	0	0	0	0	1	0	0	0	9719	101	4	5	2738	5	MLLT10	10	22022812	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	4095238	22022812	113511935	262	160920											
ARMC3	219681	broad.mit.edu	37	chr10	23297778	23297778	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttagtgctggatttggaTctcccatagaagacaaatca	8	7	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23297778	A	A	23297778	3	1	205	1	0	0	0	0	1	0	0	0	956	1435	50	5	2021	5	ARMC3	10	23297778	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	1274966	23297778	112236969	263	160921											
GPR158	57512	broad.mit.edu	37	chr10	25684824	25684824	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgatcaactatgttgctgtCttttcttcttcatagtgtat	6	7	5	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25684824	A	A	25684824	1	1	205	0	1	0	0	0	0	0	0	0	6728	928	32	3		3	GPR158	10	25684824	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2387046	25684824	109849923	264	160922											
GPR158	57512	broad.mit.edu	37	chr10	25887711	25887711	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaatctcaccacaagccTaaggcagctgaggtttgtca	10	10	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25887711	A	A	25887711	2	1	205	1	0	0	0	0	0	0	0	1	6728	1509	53	5		5	GPR158	10	25887711	Silent	SNP	T	TCGA-73-4662-01A-01D-1265-08	202887	25887711	109647036	265	160923											
EPC1	80314	broad.mit.edu	37	chr10	32573955	32573955	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaacacactgtcatagtctGaatgagctctgtccagtaag	9	9	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32573955	A	A	32573955	3	1	205	1	0	0	0	0	1	0	0	0	5202	1294	45	4	1119	4	EPC1	10	32573955	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	6686244	32573955	102960792	266	160924											
ZNF248	57209	broad.mit.edu	37	chr10	38120629	38120629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaaaggtcttcccacatgCattacactcatacggcttct	5	13	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38120629	A	A	38120629	3	1	205	1	0	0	0	0	1	0	0	0	17919	710	25	3	89	3	ZNF248	10	38120629	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	5546674	38120629	97414118	267	160925											
HERC4	26091	broad.mit.edu	37	chr10	69699479	69699480	+	Intron	DEL	AT	-	-													tttgactattttacttatggAtatatatatatatatatact							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69699480	-	-	69699479	6	5	205	0	1	1	0	1	0	0	0	0	7127	348	12	0		0	HERC4	10	69699479	Intron	DEL	AT	TCGA-73-4662-01A-01D-1265-08	31578850	69699479	65835268	268	160926											
ECD	11319	broad.mit.edu	37	chr10	74898992	74898992	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaaaaaaaaaaaaaaaaGtggaaatggcaatgactatg	7	4	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74898992	A	A	74898992	1	1	205	0	1	0	0	0	0	0	0	0	4928	1044	36	4		4	ECD	10	74898992	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	5199513	74898992	60635755	269	160927											
TBC1D12	23232	broad.mit.edu	37	chr10	96291100	96291100	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatattctcctgcagatGgactttattcatatagcaca	7	8	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96291100	A	A	96291100	3	1	205	1	0	0	0	0	1	0	0	0	15720	1348	47	4	2188	4	TBC1D12	10	96291100	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	21392108	96291100	39243647	270	160928											
PDZD7	79955	broad.mit.edu	37	chr10	102780300	102780300	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaccaagcctggcccttttCttcttcagagagccgggccc	9	17	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102780300	A	A	102780300	1	1	205	0	1	0	0	0	0	0	0	0	11798	928	32	3		3	PDZD7	10	102780300	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	6489200	102780300	32754447	271	160929											
C10orf78	119392	broad.mit.edu	37	chr10	105883551	105883553	+	In_Frame_Del	DEL	TTA	-	-													ttacaatgtggtgaaacgtcTtaaagtagagagtgaagaaa							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105883553	-	-	105883551	7	5	205	1	0	1	0	1	0	0	0	0	1628	1609	56	0	225	0	C10orf78	10	105883551	In_Frame_Del	DEL	TTA	TCGA-73-4662-01A-01D-1265-08	3103251	105883551	29651196	272	160930											
C10orf79	80217	broad.mit.edu	37	chr10	105985209	105985209	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaattccacaggatgcTgaaacttaccaaagggccag	10	9	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105985209	A	A	105985209	1	1	205	0	1	0	0	0	0	0	0	0	1629	1595	55	5		5	C10orf79	10	105985209	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	101658	105985209	29549538	273	160931											
SORCS1	114815	broad.mit.edu	37	chr10	108447944	108447944	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattctgcttcaataggaagActcaccagcaagcagtgcac	8	12	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108447944	C	C	108447944	1	2	205	0	1	0	0	0	0	0	0	0	15044	290	10	5		5	SORCS1	10	108447944	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	2462735	108447944	27086803	274	160932											
NRAP	4892	broad.mit.edu	37	chr10	115371929	115371929	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actgagccaacaggagcctgGaggtcaccaccctgaggtcc	12	14	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115371929	A	A	115371929	1	1	205	0	1	0	0	0	0	0	0	0	10733	1189	41	4		4	NRAP	10	115371929	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	6923985	115371929	20162818	275	160933											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199151	118199151	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtaaggctgctttttcgCtgccatttaagttattccac	8	9	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118199151	A	A	118199151	1	1	205	0	1	0	0	0	0	0	0	0	12247	812	28	3		3	PNLIPRP3	10	118199151	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2827222	118199151	17335596	276	160934											
GPR123	84435	broad.mit.edu	37	chr10	134886307	134886308	+	Intron	DNP	GG	TT	TT													accccttccggcacggcaccGgcaccgtcctgggcgcccct							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	134886308	TT	TT	134886307	1	4	205	0	1	0	0	0	0	0	0	0	6702	1131	39	1		1	GPR123	10	134886307	Intron	DNP	GG	TCGA-73-4662-01A-01D-1265-08	16687156	134886307	648440	277	160935											
SCGB1C1	147199	broad.mit.edu	37	chr11	193795	193795	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaccccagaggagctctatGaggggaccttgggcaagtac	15	10	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193795	T	T	193795	4	4	205	1	0	0	0	0	0	1	0	0	14007	1291	45	3	145	3	SCGB1C1	11	193795	Nonsense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08		193795	134812721	278	160936											
PHRF1	57661	broad.mit.edu	37	chr11	597358	597358	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggaggcgtgtggcctGtgagtgtggcacatcagccc	18	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	597358	T	T	597358	1	4	205	0	1	0	0	0	0	0	0	0	11956	1392	48	3		3	PHRF1	11	597358	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	403563	597358	134409158	279	160937											
TALDO1	6888	broad.mit.edu	37	chr11	763398	763398	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atgacgttactcttctccttCgcccaggctgtggcctgtgc	10	14	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	763398	T	T	763398	2	4	205	1	0	0	0	0	0	0	0	1	15662	883	31	4		4	TALDO1	11	763398	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	166040	763398	134243118	280	160938											
MUC2	4583	broad.mit.edu	37	chr11	1083181	1083181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctcgagggctttgcgcCtgtggacggctgcggctgcc	16	13	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1083181	A	A	1083181	3	1	205	1	0	0	0	0	1	0	0	0	10069	681	24	2	2143	2	MUC2	11	1083181	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	319783	1083181	133923335	281	160939											
TNNI2	7136	broad.mit.edu	37	chr11	1860895	1860895	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaacacctctgtcttcctCtccccacaggctccaagctc	5	20	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1860895	A	A	1860895	1	1	205	0	1	0	0	0	0	0	0	0	16450	928	32	3		3	TNNI2	11	1860895	5'Flank	SNP	C	TCGA-73-4662-01A-01D-1265-08	777714	1860895	133145621	282	160940											
TNNT3	7140	broad.mit.edu	37	chr11	1957425	1957425	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccgcccatccagccttgtaAccatcttggtctttctagat	7	14	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1957425	T	T	1957425	1	4	205	0	1	0	0	0	0	0	0	0	16455	58	2	5		5	TNNT3	11	1957425	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	96530	1957425	133049091	283	160941											
OR51A7	119687	broad.mit.edu	37	chr11	4928721	4928721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacctgcttgccatcatggGcaactgcaccattctcttta	7	13	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4928721	T	T	4928721	3	4	205	1	0	0	0	0	1	0	0	0	11182	1203	42	3	124	3	OR51A7	11	4928721	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2971296	4928721	130077795	284	160942											
OR51L1	119682	broad.mit.edu	37	chr11	5020560	5020561	+	Frame_Shift_Ins	INS	-	T	T													cattcctggagtcctcagtgINSttgctggccatggcctttga							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5020561	T	T	5020560	7	5	205	1	0	1	1	0	0	0	0	0	11196	1364	48	0	350	0	OR51L1	11	5020560	Frame_Shift_Ins	INS	-	TCGA-73-4662-01A-01D-1265-08	91839	5020560	129985956	285	160943											
OR56A4	120793	broad.mit.edu	37	chr11	6023636	6023636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggtagagctgattgaaaGtgatgtcatcacaagagagt	12	5	2	5			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6023636	A	A	6023636	3	1	205	1	0	0	0	0	1	0	0	0	11229	1029	36	4	356	4	OR56A4	11	6023636	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1003076	6023636	128982880	286	160944											
TPH1	7166	broad.mit.edu	37	chr11	18044391	18044391	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttcagatacaaagtagaCatcttgaaaagttgtgataa	7	5	2	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18044391	T	T	18044391	3	4	205	1	0	0	0	0	1	0	0	0	16525	478	17	4	228	4	TPH1	11	18044391	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	12020755	18044391	116962125	287	160945											
NELL1	4745	broad.mit.edu	37	chr11	21581993	21581993	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttccctcacttttctacCtccccagctctctccctctt	1	20	5	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21581993	A	A	21581993	1	1	205	0	1	0	0	0	0	0	0	0	10428	696	24	2		2	NELL1	11	21581993	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	3537602	21581993	113424523	288	160946											
EHF	26298	broad.mit.edu	37	chr11	34668199	34668199	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggacggcggggcagctccTctacagcaacttgcagcatc	13	13	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34668199	C	C	34668199	3	2	205	1	0	0	0	0	1	0	0	0	5021	1551	54	5	317	5	EHF	11	34668199	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	13086206	34668199	100338317	289	160947											
SYT13	57586	broad.mit.edu	37	chr11	45307669	45307669	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttggggtgcatgtgccgAcacaggcaggtgaccccgca	14	12	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45307669	G	G	45307669	2	3	205	1	0	0	0	0	0	0	0	1	15588	273	10	5		5	SYT13	11	45307669	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	10639470	45307669	89698847	290	160948											
CHRM4	1132	broad.mit.edu	37	chr11	46407047	46407047	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacaatctcaatggctgtcAcacactcattgcctgtctgc	7	14	4	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46407047	T	T	46407047	3	4	205	1	0	0	0	0	1	0	0	0	3410	159	6	5	382	5	CHRM4	11	46407047	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	1099378	46407047	88599469	291	160949											
LRP4	4038	broad.mit.edu	37	chr11	46894892	46894892	+	Intron	DEL	C	-	-													ctttccacccagcccttcttCcctggatctctcttctgctg							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46894892	-	-	46894892	6	5	205	0	1	1	0	1	0	0	0	0	9046	870	30	0		0	LRP4	11	46894892	Intron	DEL	C	TCGA-73-4662-01A-01D-1265-08	487845	46894892	88111624	292	160950											
OR4X1	390113	broad.mit.edu	37	chr11	48285600	48285600	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtatttctttctcagctActtatcctttgtggagatct	6	9	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48285600	G	G	48285600	3	3	205	1	0	0	0	0	1	0	0	0	11178	391	14	5	190	5	OR4X1	11	48285600	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	1390708	48285600	86720916	293	160951											
OR4S1	256148	broad.mit.edu	37	chr11	48328454	48328454	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actgaacctaagaagccagtCatctgaggaccggcgtaagg	12	10	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48328454	A	A	48328454	4	1	205	1	0	0	0	0	0	1	0	0	11176	838	29	3	682	3	OR4S1	11	48328454	Nonsense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	42854	48328454	86678062	294	160952											
FOLH1	2346	broad.mit.edu	37	chr11	49204841	49204841	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtaaaaactcagtttcattCaaacggttctctataaatca	4	8	5	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49204841	T	T	49204841	1	4	205	0	1	0	0	0	0	0	0	0	6037	841	29	4		4	FOLH1	11	49204841	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	876387	49204841	85801675	295	160953											
OR4C13	283092	broad.mit.edu	37	chr11	49974727	49974727	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcttatcctttataccCtgcatatttgtgtacatgag	6	9	2	1	rs150732180		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49974727	A	A	49974727	2	1	205	1	0	0	0	0	0	0	0	1	11141	668	24	2		2	OR4C13	11	49974727	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	769886	49974727	85031789	296	160954											
OR4A16	81327	broad.mit.edu	37	chr11	55110823	55110823	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgggtgactactattggCagcccctccttgggctccct	10	13	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55110823	A	A	55110823	2	1	205	1	0	0	0	0	0	0	0	1	11135	697	25	3		3	OR4A16	11	55110823	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	5136096	55110823	79895693	297	160955											
SPRYD5	84767	broad.mit.edu	37	chr11	55658932	55658932	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgcagtctctttaccaccTccccacttgtggtgcaatat	6	14	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55658932	A	A	55658932	3	1	205	1	0	0	0	0	1	0	0	0	15229	1551	54	5	1205	5	SPRYD5	11	55658932	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	548109	55658932	79347584	298	160956											
OR8J1	219477	broad.mit.edu	37	chr11	56128013	56128013	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actacctcattctatgaatgTgccacccaactgggagggtt	9	11	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128013	A	A	56128013	4	1	205	1	0	0	0	0	0	1	0	0	11335	1702	59	5	293	5	OR8J1	11	56128013	Nonsense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	469081	56128013	78878503	299	160957											
PRPF19	27339	broad.mit.edu	37	chr11	60658726	60658726	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccacccctgtggtcaggCcgctatgctctgaggagaaa	13	12	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60658726	T	T	60658726	3	4	205	1	0	0	0	0	1	0	0	0	12670	739	26	4	91	4	PRPF19	11	60658726	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	4530713	60658726	74347790	300	160958											
C11orf9	745	broad.mit.edu	37	chr11	61544847	61544847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatcaacacagaccggccgGatgaggcgctggttgtgcac	14	12	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61544847	T	T	61544847	3	4	205	1	0	0	0	0	1	0	0	0	1683	1174	41	3	1771	3	C11orf9	11	61544847	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	886121	61544847	73461669	301	160959											
FADS2	9415	broad.mit.edu	37	chr11	61632769	61632769	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaggggtggaggtccacAggcgctgggccctgggatca	20	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61632769	T	T	61632769	1	4	205	0	1	0	0	0	0	0	0	0	5412	203	7	5		5	FADS2	11	61632769	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	87922	61632769	73373747	302	160960											
PLCB3	5331	broad.mit.edu	37	chr11	64023116	64023116	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggggacaggggcggggTggggtgtcacggtgggcacc	25	7	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64023116	G	G	64023116	1	3	205	0	1	0	0	0	0	0	0	0	12124	1711	59	5		5	PLCB3	11	64023116	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	2390347	64023116	70983400	303	160961											
POLA2	23649	broad.mit.edu	37	chr11	65055391	65055391	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaaatttttaggaagcatGtcagtccctcctccttttag	6	10	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65055391	A	A	65055391	1	1	205	0	1	0	0	0	0	0	0	0	12283	1392	48	4		4	POLA2	11	65055391	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1032275	65055391	69951125	304	160962											
MUS81	80198	broad.mit.edu	37	chr11	65630743	65630743	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgaggccaaagccccGccccaacccatcacctgcag	9	17	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65630743	T	T	65630743	1	4	205	0	1	0	0	0	0	0	0	0	10082	1102	38	3		3	MUS81	11	65630743	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	575352	65630743	69375773	305	160963											
ANO1	55107	broad.mit.edu	37	chr11	69933828	69933828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcacgagcagctcgatgGtgaatgggtgtcttttcttc	11	10	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69933828	T	T	69933828	1	4	205	0	1	0	0	0	0	0	0	0	695	1276	44	3		3	ANO1	11	69933828	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	4303085	69933828	65072688	306	160964											
TMEM135	65084	broad.mit.edu	37	chr11	87025448	87025448	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtaagtgaattaacatttCtgatgacataataacaaata	5	4	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87025448	T	T	87025448	1	4	205	0	1	0	0	0	0	0	0	0	16174	928	32	4		4	TMEM135	11	87025448	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	17091620	87025448	47981068	307	160965											
CNTN5	53942	broad.mit.edu	37	chr11	100211835	100211835	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattttgcagctcctagtcaAgcacctagcaacctcaggtg	8	12	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100211835	C	C	100211835	3	2	205	1	0	0	0	0	1	0	0	0	3676	69	3	5	3010	5	CNTN5	11	100211835	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	13186387	100211835	34794681	308	160966											
AMICA1	120425	broad.mit.edu	37	chr11	118068676	118068676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagaacggcccaggcctgCatctacttagtgttttaggc	11	10	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118068676	A	A	118068676	1	1	205	0	1	0	0	0	0	0	0	0	574	725	25	3		3	AMICA1	11	118068676	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	17856841	118068676	16937840	309	160967											
CRTAM	56253	broad.mit.edu	37	chr11	122720770	122720770	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcatccccatttctcttcctCcacagaggcctctctgacta	4	17	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122720770	T	T	122720770	1	4	205	0	1	0	0	0	0	0	0	0	3929	870	30	4		4	CRTAM	11	122720770	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	4652094	122720770	12285746	310	160968											
PRDM10	56980	broad.mit.edu	37	chr11	129794872	129794872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctttcaacaaatcaaggcGgtcaaaggattctgggcaaa	9	8	5	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129794872	A	A	129794872	3	1	205	1	0	0	0	0	1	0	0	0	12557	1116	39	4	1727	4	PRDM10	11	129794872	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	7074102	129794872	5211644	311	160969											
CD163L1	283316	broad.mit.edu	37	chr12	7586276	7586276	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccattgaccagcctcaactCcaaatctgttccatctgcaa	4	15	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7586276	A	A	7586276	4	1	205	1	0	0	0	0	0	1	0	0	2998	864	30	3	4290	3	CD163L1	12	7586276	Nonsense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08		7586276	126265619	312	160970											
FAM90A1	55138	broad.mit.edu	37	chr12	8374359	8374359	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctctgtgctcctcagtcCcacagtcccctccaagtcac	6	19	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8374359	A	A	8374359	1	1	205	0	1	0	0	0	0	0	0	0	5703	638	22	2		2	FAM90A1	12	8374359	3'UTR	SNP	C	TCGA-73-4662-01A-01D-1265-08	788083	8374359	125477536	313	160971											
MAGOHB	55110	broad.mit.edu	37	chr12	10766174	10766174	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacgcagccaacgtgtcCcccggcgccttgcagtgacg	12	15	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10766174	A	A	10766174	1	1	205	0	1	0	0	0	0	0	0	0	9287	638	22	2		2	MAGOHB	12	10766174	5'UTR	SNP	C	TCGA-73-4662-01A-01D-1265-08	2391815	10766174	123085721	314	160972											
STRAP	11171	broad.mit.edu	37	chr12	16047117	16047117	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatttacaatttaaggccgGgcatggtggctcacgcctat	10	9	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16047117	C	C	16047117	1	2	205	0	1	0	0	0	0	0	0	0	15444	1247	43	4		4	STRAP	12	16047117	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	5280943	16047117	117804778	315	160973											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	205	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	9351168	25398285	108453610	316	160974											
SYT10	341359	broad.mit.edu	37	chr12	33529829	33529829	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatcaaaactggtcgcccggCcaggtaactgaaagacaaaa	9	10	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33529829	G	G	33529829	3	3	205	1	0	0	0	0	1	0	0	0	15585	739	26	4	67	4	SYT10	12	33529829	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	8131544	33529829	100322066	317	160975											
PPHLN1	51535	broad.mit.edu	37	chr12	42681180	42681181	+	Intron	DNP	GG	TT	TT													ttcaagatttcctacatcccGgatgacgaggtgagctgccc							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	42681181	TT	TT	42681180	1	4	205	0	1	0	0	0	0	0	0	0	12411	1131	39	1		1	PPHLN1	12	42681180	Intron	DNP	GG	TCGA-73-4662-01A-01D-1265-08	9151351	42681180	91170715	318	160976											
NELL2	4753	broad.mit.edu	37	chr12	45173407	45173407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttgaaactcattagaaaGcatttacatttcattctcag	4	7	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45173407	T	T	45173407	1	4	205	0	1	0	0	0	0	0	0	0	10429	986	34	3		3	NELL2	12	45173407	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2492227	45173407	88678488	319	160977											
WNT10B	7480	broad.mit.edu	37	chr12	49362049	49362049	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaggccgtggctactgCgtgcatgaccccagcagcca	13	15	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49362049	A	A	49362049	3	1	205	1	0	0	0	0	1	0	0	0	17510	768	27	3	786	3	WNT10B	12	49362049	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	4188642	49362049	84489846	320	160978											
FMNL3	91010	broad.mit.edu	37	chr12	50045755	50045755	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggggcaagggcggagctgGtggtggaggaagaggcagga	24	4	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50045755	A	A	50045755	3	1	205	1	0	0	0	0	1	0	0	0	6011	1261	44	4	1571	4	FMNL3	12	50045755	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	683706	50045755	83806140	321	160979											
ERBB3	2065	broad.mit.edu	37	chr12	56489093	56489093	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaacactggtgctgatcGggtatgatggggttggagat	16	5	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56489093	T	T	56489093	3	4	205	1	0	0	0	0	1	0	0	0	5250	1130	39	1	2105	1	ERBB3	12	56489093	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	6443338	56489093	77362802	322	160980											
SLC39A5	283375	broad.mit.edu	37	chr12	56629465	56629465	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacatgctggggcttttgcGgcaccgagggctcaggccag	16	11	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56629465	A	A	56629465	3	1	205	1	0	0	0	0	1	0	0	0	14735	1116	39	4	944	4	SLC39A5	12	56629465	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	140372	56629465	77222430	323	160981											
DPY19L2	283417	broad.mit.edu	37	chr12	63974596	63974596	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttctcaaaacgaactctGcgaaaaagccagccaaagag	7	12	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63974596	T	T	63974596	2	4	205	1	0	0	0	0	0	0	0	1	4781	1306	46	3		3	DPY19L2	12	63974596	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	7345131	63974596	69877299	324	160982											
LGR5	8549	broad.mit.edu	37	chr12	71898271	71898271	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagatgtagaatagcaattCatttgtcaagcaggggaatg	11	4	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71898271	A	A	71898271	1	1	205	0	1	0	0	0	0	0	0	0	8829	841	29	3		3	LGR5	12	71898271	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	7923675	71898271	61953624	325	160983											
E2F7	144455	broad.mit.edu	37	chr12	77424063	77424063	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agggaaaggagcaacagggtCcaagctgcttgatggaggca	16	7	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77424063	G	G	77424063	3	3	205	1	0	0	0	0	1	0	0	0	4912	855	30	4	1319	4	E2F7	12	77424063	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	5525792	77424063	56427832	326	160984											
SLC17A8	246213	broad.mit.edu	37	chr12	100797998	100797998	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttttgtagaattagggtAaactgaactgcagagcatat	10	5	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100797998	G	G	100797998	1	3	205	0	1	0	0	0	0	0	0	0	14536	377	13	5		5	SLC17A8	12	100797998	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	23373935	100797998	33053897	327	160985											
SPIC	121599	broad.mit.edu	37	chr12	101876581	101876581	+	Frame_Shift_Del	DEL	G	-	-													tttatatagaacagtgctgcGgacttctattttgaaggaaa							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101876581	-	-	101876581	7	5	205	1	0	1	0	1	0	0	0	0	15169	1103	39	0	230	0	SPIC	12	101876581	Frame_Shift_Del	DEL	G	TCGA-73-4662-01A-01D-1265-08	1078583	101876581	31975314	328	160986											
WSCD2	9671	broad.mit.edu	37	chr12	108618489	108618489	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgactccttgtatatctgaCtagtcctcttctctctggct	6	13	4	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108618489	A	A	108618489	1	1	205	0	1	0	0	0	0	0	0	0	17534	580	20	3		3	WSCD2	12	108618489	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	6741908	108618489	25233406	329	160987											
CORO1C	23603	broad.mit.edu	37	chr12	109042258	109042258	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaccttctcccactttttCatttactgaaaacccctgag	5	13	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109042258	A	A	109042258	1	1	205	0	1	0	0	0	0	0	0	0	3787	841	29	3		3	CORO1C	12	109042258	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	423769	109042258	24809637	330	160988											
IFT81	28981	broad.mit.edu	37	chr12	110574609	110574609	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagtgcaaagattgcaaaGagtacaaaaccagctgaaaa	9	7	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110574609	A	A	110574609	3	1	205	1	0	0	0	0	1	0	0	0	7635	942	33	4	751	4	IFT81	12	110574609	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1532351	110574609	23277286	331	160989											
ACAD10	80724	broad.mit.edu	37	chr12	112174763	112174763	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatggctttttcctttttcCgtgtggctgcaatcctacag	8	10	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112174763	T	T	112174763	3	4	205	1	0	0	0	0	1	0	0	0	108	652	23	4	1808	4	ACAD10	12	112174763	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	1600154	112174763	21677132	332	160990											
IQCD	115811	broad.mit.edu	37	chr12	113645421	113645421	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagctctatcaggctgtcaAtaaaattctgggcttctgca	10	9	5	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113645421	G	G	113645421	3	3	205	1	0	0	0	0	1	0	0	0	7875	101	4	5	500	5	IQCD	12	113645421	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	1470658	113645421	20206474	333	160991											
TBX3	6926	broad.mit.edu	37	chr12	115120699	115120699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctccaggtgcaccttggGgtcgtcctccacctcttctt	9	16	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115120699	T	T	115120699	3	4	205	1	0	0	0	0	1	0	0	0	15781	1232	43	2	1956	2	TBX3	12	115120699	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1475278	115120699	18731196	334	160992											
ZCCHC8	55596	broad.mit.edu	37	chr12	122958283	122958283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcacagtttggtacgaCactgccattatcaagaaggg	11	8	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122958283	A	A	122958283	3	1	205	1	0	0	0	0	1	0	0	0	17720	478	17	3	242	3	ZCCHC8	12	122958283	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	7837584	122958283	10893612	335	160993											
PIWIL1	9271	broad.mit.edu	37	chr12	130841526	130841526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgcaccattaattagtGttaagccactagataactgg	10	7	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130841526	T	T	130841526	3	4	205	1	0	0	0	0	1	0	0	0	12052	1377	48	3	1514	3	PIWIL1	12	130841526	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	7883243	130841526	3010369	336	160994											
MMP17	4326	broad.mit.edu	37	chr12	132325033	132325033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcataggggcacccccggGctgaggaggggcgttcaggg	18	12	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132325033	T	T	132325033	1	4	205	0	1	0	0	0	0	0	0	0	9749	1218	42	3		3	MMP17	12	132325033	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	1483507	132325033	1526862	337	160995											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20221403	20221403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgagcggggaagagagagGcctctggtccacggactcag	17	9	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20221403	T	T	20221403	3	4	205	1	0	0	0	0	1	0	0	0	9821	1203	42	3	1200	3	MPHOSPH8	13	20221403	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08		20221403	94948475	338	160996											
BRCA2	675	broad.mit.edu	37	chr13	32907276	32907276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaggaggactccttatGtccaaatttaattgataatg	8	6	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32907276	T	T	32907276	3	4	205	1	0	0	0	0	1	0	0	0	1508	1377	48	3	1695	3	BRCA2	13	32907276	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	12685873	32907276	82262602	339	160997											
NALCN	259232	broad.mit.edu	37	chr13	101735600	101735600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagacacaggtcacatttaCtttcttgtcgtttattttct	5	8	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101735600	A	A	101735600	1	1	205	0	1	0	0	0	0	0	0	0	10242	580	20	3		3	NALCN	13	101735600	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	68828324	101735600	13434278	340	160998											
FGF14	2259	broad.mit.edu	37	chr13	102378842	102378842	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgcaaccatcacctagatCaaaataaatgacatttccag	5	10	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102378842	A	A	102378842	1	1	205	0	1	0	0	0	0	0	0	0	5900	841	29	3		3	FGF14	13	102378842	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	643242	102378842	12791036	341	160999											
ATP11A	23250	broad.mit.edu	37	chr13	113487067	113487067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagctgccttcgtggccGcggggaccccccccaccccg	11	21	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113487067	T	T	113487067	1	4	205	0	1	0	0	0	0	0	0	0	1123	1102	38	3		3	ATP11A	13	113487067	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	11108225	113487067	1682811	342	161000											
TMCO3	55002	broad.mit.edu	37	chr13	114150360	114150360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcagtcctagagagggagAgagagagagagggagaggga	21	3	1	5			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114150360	G	G	114150360	1	3	205	0	1	0	0	0	0	0	0	0	16120	319	11	5		5	TMCO3	13	114150360	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	663293	114150360	1019518	343	161001											
LRRC16B	90668	broad.mit.edu	37	chr14	24523588	24523588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggagtctgaggctctgaCgcttcgtctcccccagatcc	12	14	3	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24523588	T	T	24523588	1	4	205	0	1	0	0	0	0	0	0	0	9059	551	19	4		4	LRRC16B	14	24523588	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08		24523588	82825952	344	161002											
SLC25A21	89874	broad.mit.edu	37	chr14	37154021	37154021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctccaggaactggttgaGgcccttgaatcctacttttg	9	11	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37154021	T	T	37154021	3	4	205	1	0	0	0	0	1	0	0	0	14598	1000	35	2	203	2	SLC25A21	14	37154021	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	12630433	37154021	70195519	345	161003											
TRAPPC6B	122553	broad.mit.edu	37	chr14	39620949	39620949	+	Splice_Site	DEL	C	-	-													agaaaggcgaattcaacttaCaagcaggcattgaagacact							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39620949	-	-	39620949	8	5	205	1	0	1	0	1	0	0	1	0	16588	492	17	0	38	0	TRAPPC6B	14	39620949	Splice_Site	DEL	C	TCGA-73-4662-01A-01D-1265-08	2466928	39620949	67728591	346	161004											
SYNJ2BP	55333	broad.mit.edu	37	chr14	70855425	70855425	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcctactggggaggaaagGctgatggagaggagatgctg	18	5	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70855425	C	C	70855425	1	2	205	0	1	0	0	0	0	0	0	0	15573	1218	42	4		4	SYNJ2BP	14	70855425	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	31234476	70855425	36494115	347	161005											
MED6	10001	broad.mit.edu	37	chr14	71052429	71052429	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgattgatttacaagctgtTtgaccttatttcaagcgtaa	8	6	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71052429	C	C	71052429	1	2	205	0	1	0	0	0	0	0	0	0	9544	1856	64	5		5	MED6	14	71052429	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	197004	71052429	36297111	348	161006											
FBLN5	10516	broad.mit.edu	37	chr14	92343783	92343783	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgttcctaggagagacagcAcaaggccactgttacagatg	11	10	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92343783	T	T	92343783	1	4	205	0	1	0	0	0	0	0	0	0	5757	174	6	5		5	FBLN5	14	92343783	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	21291354	92343783	15005757	349	161007											
AHNAK2	113146	broad.mit.edu	37	chr14	105412026	105412026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcttcgggcctttcagGtccagcttggggcccttgat	11	13	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105412026	T	T	105412026	3	4	205	1	0	0	0	0	1	0	0	0	415	1252	44	3	7629	3	AHNAK2	14	105412026	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	13068243	105412026	1937514	350	161008											
AHNAK2	113146	broad.mit.edu	37	chr14	105412521	105412521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgtcttcgggcctttcagGtccagcttggggcccttgac	12	14	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105412521	T	T	105412521	3	4	205	1	0	0	0	0	1	0	0	0	415	1252	44	3	8124	3	AHNAK2	14	105412521	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	495	105412521	1937019	351	161009											
APBA2	321	broad.mit.edu	37	chr15	29409425	29409425	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgggccgcagacttgaccccGacgccacagcccagccacgg	12	19	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29409425	T	T	29409425	1	4	205	0	1	0	0	0	0	0	0	0	759	1073	37	3		3	APBA2	15	29409425	3'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08		29409425	73121967	352	161010											
MAPKBP1	23005	broad.mit.edu	37	chr15	42109166	42109166	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccatgtgctggatgccggGcgggagtacagcctacagca	14	11	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42109166	T	T	42109166	2	4	205	1	0	0	0	0	0	0	0	1	9384	1190	42	3		3	MAPKBP1	15	42109166	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	12699741	42109166	60422226	353	161011											
CAPN3	825	broad.mit.edu	37	chr15	42678003	42678003	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacattgcaaaggcacagGgcagggcagatttcctacag	11	11	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42678003	A	A	42678003	1	1	205	0	1	0	0	0	0	0	0	0	2654	1247	43	4		4	CAPN3	15	42678003	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	568837	42678003	59853389	354	161012											
UBR1	197131	broad.mit.edu	37	chr15	43351803	43351803	+	Intron	DEL	G	-	-													aaccaaaaaaaaaaaaaaaaGaaaaactttatttcatactc					rs67616044		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43351803	-	-	43351803	6	5	205	0	1	1	0	1	0	0	0	0	17027	957	33	0		0	UBR1	15	43351803	Intron	DEL	G	TCGA-73-4662-01A-01D-1265-08	673800	43351803	59179589	355	161013											
CTDSPL2	51496	broad.mit.edu	37	chr15	44806806	44806806	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttccttaggtttatgtgaGattaagaccatttttcaggg	9	5	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44806806	C	C	44806806	3	2	205	1	0	0	0	0	1	0	0	0	4040	942	33	4	1010	4	CTDSPL2	15	44806806	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1455003	44806806	57724586	356	161014											
SEMA6D	80031	broad.mit.edu	37	chr15	48063372	48063372	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaagagagatcaccggcGttctgttgattccagaaata	10	8	2	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48063372	A	A	48063372	3	1	205	1	0	0	0	0	1	0	0	0	14155	1145	40	4	2725	4	SEMA6D	15	48063372	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	3256566	48063372	54468020	357	161015											
TLN2	83660	broad.mit.edu	37	chr15	63084805	63084805	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatggcagagtccatcacGcttctccttccccatcctgg	8	16	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63084805	T	T	63084805	1	4	205	0	1	0	0	0	0	0	0	0	16071	1102	38	3		3	TLN2	15	63084805	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	15021433	63084805	39446587	358	161016											
IGDCC3	9543	broad.mit.edu	37	chr15	65621915	65621915	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggggacagctggttttccAcatctttacacaggaggacc	12	10	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65621915	G	G	65621915	3	3	205	1	0	0	0	0	1	0	0	0	7638	159	6	5	434	5	IGDCC3	15	65621915	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	2537110	65621915	36909477	359	161017											
ARIH1	25820	broad.mit.edu	37	chr15	72859047	72859047	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttatctatctattgatagAtttttttttatccttttaat	3	4	2	2	rs138966710	by1000genomes	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72859047	T	T	72859047	1	4	205	0	1	0	0	0	0	0	0	0	925	348	12	5		5	ARIH1	15	72859047	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	7237132	72859047	29672345	360	161018											
NEO1	4756	broad.mit.edu	37	chr15	73541597	73541597	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgattggaatagtagagtTgaaatatatttccaaaactc	7	4	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73541597	A	A	73541597	1	1	205	0	1	0	0	0	0	0	0	0	10431	1827	63	5		5	NEO1	15	73541597	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	682550	73541597	28989795	361	161019											
PGPEP1L	145814	broad.mit.edu	37	chr15	99514147	99514147	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggaccttgcatgactggTggggcctggggacggggtgc	20	9	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99514147	C	C	99514147	1	2	205	0	1	0	0	0	0	0	0	0	11899	1711	59	5		5	PGPEP1L	15	99514147	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	25972550	99514147	3017245	362	161020											
MSLNL	401827	broad.mit.edu	37	chr16	830202	830202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtcccggcgggagcagGggccggggcatccgggtccc	21	13	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	830202	T	T	830202	3	4	205	1	0	0	0	0	1	0	0	0	9976	1232	43	2	2418	2	MSLNL	16	830202	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08		830202	89524551	363	161021											
TRAF7	84231	broad.mit.edu	37	chr16	2204953	2204953	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgccaaaatacagacattAagtccccactccttcgtttc	5	14	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2204953	T	T	2204953	1	4	205	0	1	0	0	0	0	0	0	0	16570	377	13	5		5	TRAF7	16	2204953	5'Flank	SNP	A	TCGA-73-4662-01A-01D-1265-08	1374751	2204953	88149800	364	161022											
EMP2	2013	broad.mit.edu	37	chr16	10641523	10641523	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggtcacgtttaaagcccaGagcgggatgtgctgaagagg	17	7	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10641523	A	A	10641523	1	1	205	0	1	0	0	0	0	0	0	0	5144	957	33	4		4	EMP2	16	10641523	5'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	8436570	10641523	79713230	365	161023											
ACSM2A	123876	broad.mit.edu	37	chr16	20491954	20491954	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttggctccttggagaccgGggaatcaaagatgaagatgg	14	6	1	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20491954	A	A	20491954	2	1	205	1	0	0	0	0	0	0	0	1	183	1219	43	4		4	ACSM2A	16	20491954	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	9850431	20491954	69862799	366	161024											
ACSM2B	348158	broad.mit.edu	37	chr16	20554525	20554525	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcttcatctttgattccCcggtctccaaggagccaaaa	6	14	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20554525	T	T	20554525	2	4	205	1	0	0	0	0	0	0	0	1	184	610	22	4		4	ACSM2B	16	20554525	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	62571	20554525	69800228	367	161025											
KIAA0556	23247	broad.mit.edu	37	chr16	27715463	27715463	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccccccctccctggcacAcagaggtatatatgatgaag	9	15	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27715463	G	G	27715463	1	3	205	0	1	0	0	0	0	0	0	0	8253	174	6	5		5	KIAA0556	16	27715463	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	7160938	27715463	62639290	368	161026											
TGFB1I1	7041	broad.mit.edu	37	chr16	31485367	31485378	+	Intron	DEL	AGAGGAATACAC	-	-													gaagggtggggcagagactaAgaggaatacacttcccagag							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31485378	-	-	31485367	6	5	205	0	1	1	0	1	0	0	0	0	15940	87	3	0		0	TGFB1I1	16	31485367	Intron	DEL	AGAGGAATACAC	TCGA-73-4662-01A-01D-1265-08	3769904	31485367	58869386	369	161027											
SLC5A2	6524	broad.mit.edu	37	chr16	31498858	31498858	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcccggcagccttccaCgaggtgggcgggtattcggg	16	13	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31498858	T	T	31498858	2	4	205	1	0	0	0	0	0	0	0	1	14779	535	19	4		4	SLC5A2	16	31498858	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	13491	31498858	58855895	370	161028											
MYLK3	91807	broad.mit.edu	37	chr16	46764575	46764575	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccttgacgctcactacccGgtgttcaaaaggagctggtg	11	12	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46764575	C	C	46764575	3	2	205	1	0	0	0	0	1	0	0	0	10152	1115	39	4	997	4	MYLK3	16	46764575	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	15265717	46764575	43590178	371	161029											
HYDIN	54768	broad.mit.edu	37	chr16	70896074	70896074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaagggctgtggggaaCcctcggcccagtggtccatg	16	11	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70896074	A	A	70896074	3	1	205	1	0	0	0	0	1	0	0	0	7537	507	18	3	3783	3	HYDIN	16	70896074	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	24131499	70896074	19458679	372	161030											
PMFBP1	83449	broad.mit.edu	37	chr16	72159911	72159911	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctggcaggcggctgactTccgggataatgcatcatagg	13	10	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72159911	G	G	72159911	3	3	205	1	0	0	0	0	1	0	0	0	12229	1792	62	5	902	5	PMFBP1	16	72159911	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	1263837	72159911	18194842	373	161031											
PKD1L2	114780	broad.mit.edu	37	chr16	81199372	81199372	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcctagcacagggctttgGagtgccggtgtggaatgaac	15	9	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81199372	T	T	81199372	1	4	205	0	1	0	0	0	0	0	0	0	12060	1189	41	3		3	PKD1L2	16	81199372	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	9039461	81199372	9155381	374	161032											
HSD17B2	3294	broad.mit.edu	37	chr16	82068949	82068949	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttgactctctgttcacaGaactcaggctgcctccagcc	7	15	4	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82068949	T	T	82068949	1	4	205	0	1	0	0	0	0	0	0	0	7451	957	33	3		3	HSD17B2	16	82068949	5'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	869577	82068949	8285804	375	161033											
SHPK	23729	broad.mit.edu	37	chr17	3524528	3524528	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagaacaaaagaaaaactTacctgcatctgtcctctggg	8	10	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3524528	A	A	3524528	1	1	205	0	1	0	0	0	0	0	0	0	14403	1769	61	5		5	SHPK	17	3524528	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08		3524528	77670682	376	161034											
USP6	9098	broad.mit.edu	37	chr17	5042392	5042392	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcagcacacacccctcCctctgggatcagcagactac	8	18	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5042392	A	A	5042392	1	1	205	0	1	0	0	0	0	0	0	0	17213	638	22	2		2	USP6	17	5042392	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1517864	5042392	76152818	377	161035											
POLR2A	5430	broad.mit.edu	37	chr17	7406039	7406039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgaggaggcgggcaggcGggtggttctcgcccctgggg	21	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7406039	T	T	7406039	1	4	205	0	1	0	0	0	0	0	0	0	12309	1131	39	1		1	POLR2A	17	7406039	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2363647	7406039	73789171	378	161036											
KDM6B	23135	broad.mit.edu	37	chr17	7752153	7752153	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtgctaccgccctgccGcccacctcagcggcccctag	10	20	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7752153	T	T	7752153	2	4	205	1	0	0	0	0	0	0	0	1	8208	1074	38	3		3	KDM6B	17	7752153	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	346114	7752153	73443057	379	161037											
PFAS	5198	broad.mit.edu	37	chr17	8157323	8157323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcccctggacacactcGgaggaaactgcaagggaaac	13	12	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8157323	T	T	8157323	3	4	205	1	0	0	0	0	1	0	0	0	11849	1116	39	1	70	1	PFAS	17	8157323	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	405170	8157323	73037887	380	161038											
SPDYE4	388333	broad.mit.edu	37	chr17	8659558	8659558	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaaataaaaatcaaaatGtgggcgcccaagagtatgga	10	5	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8659558	A	A	8659558	1	1	205	0	1	0	0	0	0	0	0	0	15149	1392	48	4		4	SPDYE4	17	8659558	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	502235	8659558	72535652	381	161039											
MYH1	4619	broad.mit.edu	37	chr17	10411133	10411133	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatccttgcaaggttagtTttttcccccacaccatagag	7	11	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10411133	A	A	10411133	1	1	205	0	1	0	0	0	0	0	0	0	10123	1856	64	5		5	MYH1	17	10411133	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	1751575	10411133	70784077	382	161040											
ELAC2	60528	broad.mit.edu	37	chr17	12914910	12914910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacaataatgactctctaCaagcattacaaggcagagaa	6	9	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12914910	A	A	12914910	1	1	205	0	1	0	0	0	0	0	0	0	5089	493	17	3		3	ELAC2	17	12914910	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2503777	12914910	68280300	383	161041											
SLC5A10	125206	broad.mit.edu	37	chr17	18855481	18855481	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacctggtttgcccctcagtCcctcgggctcatacctagtg	10	15	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18855481	A	A	18855481	1	1	205	0	1	0	0	0	0	0	0	0	14776	870	30	3		3	SLC5A10	17	18855481	5'UTR	SNP	C	TCGA-73-4662-01A-01D-1265-08	5940571	18855481	62339729	384	161042											
ACACA	31	broad.mit.edu	37	chr17	35506652	35506652	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcaatgggcagaaaagaTggagggagaggggaagagat	18	2	1	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35506652	C	C	35506652	1	2	205	0	1	0	0	0	0	0	0	0	106	1479	51	5		5	ACACA	17	35506652	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	16651171	35506652	45688558	385	161043											
PCGF2	7703	broad.mit.edu	37	chr17	36896531	36896531	+	Intron	DEL	C	-	-													ccaccctgagcagctcccctCcccccaactcacaggaatgc							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36896531	-	-	36896531	6	5	205	0	1	1	0	1	0	0	0	0	11669	870	30	0		0	PCGF2	17	36896531	Intron	DEL	C	TCGA-73-4662-01A-01D-1265-08	1389879	36896531	44298679	386	161044											
MED24	9862	broad.mit.edu	37	chr17	38179414	38179414	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgcagaaccagtagacGccgcccatgtgcagcagggt	13	11	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38179414	A	A	38179414	2	1	205	1	0	0	0	0	0	0	0	1	9535	1074	38	4		4	MED24	17	38179414	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	1282883	38179414	43015796	387	161045											
KRTAP4-1	85285	broad.mit.edu	37	chr17	39340604	39340604	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacacatggacaagttgataTaaatgacactttcatatcat	5	7	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39340604	A	A	39340604	1	1	205	0	1	0	0	0	0	0	0	0	8620	1421	49	5		5	KRTAP4-1	17	39340604	3'UTR	SNP	T	TCGA-73-4662-01A-01D-1265-08	1161190	39340604	41854606	388	161046											
KRT17	3872	broad.mit.edu	37	chr17	39778677	39778677	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctgcatctccaggtcggctCtggccagggtcagctcatcc	11	15	5	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39778677	A	A	39778677	3	1	205	1	0	0	0	0	1	0	0	0	8525	913	32	3	720	3	KRT17	17	39778677	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	438073	39778677	41416533	389	161047											
DBF4B	80174	broad.mit.edu	37	chr17	42818613	42818613	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggtgagagtccactttatCagggctggaattctagggca	14	7	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42818613	T	T	42818613	1	4	205	0	1	0	0	0	0	0	0	0	4282	841	29	4		4	DBF4B	17	42818613	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	3039936	42818613	38376597	390	161048											
DBF4B	80174	broad.mit.edu	37	chr17	42825784	42825784	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccatcagccctcccatccCagggcagcatctcccaggat	7	20	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42825784	T	T	42825784	2	4	205	1	0	0	0	0	0	0	0	1	4282	581	21	4		4	DBF4B	17	42825784	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	7171	42825784	38369426	391	161049											
DBF4B	80174	broad.mit.edu	37	chr17	42827879	42827879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaattaattttggttcaGgaaatgtaaataaatttgtt	6	2	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42827879	T	T	42827879	1	4	205	0	1	0	0	0	0	0	0	0	4282	1015	35	2		2	DBF4B	17	42827879	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2095	42827879	38367331	392	161050											
TUBD1	51174	broad.mit.edu	37	chr17	57968330	57968330	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaaaccaatctgattgcCacactgaccaagttgcactg	6	12	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57968330	A	A	57968330	3	1	205	1	0	0	0	0	1	0	0	0	16888	594	21	2	1359	2	TUBD1	17	57968330	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	15140451	57968330	23226880	393	161051											
SMURF2	64750	broad.mit.edu	37	chr17	62574602	62574602	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagagtgcttaaaatacGttcttacctgggcactcttg	8	9	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62574602	A	A	62574602	1	1	205	0	1	0	0	0	0	0	0	0	14934	1160	40	4		4	SMURF2	17	62574602	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	4606272	62574602	18620608	394	161052											
HELZ	9931	broad.mit.edu	37	chr17	65082999	65082999	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccattgcacggaatgttctGataaggagtagatgaggtgg	14	5	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65082999	C	C	65082999	3	2	205	1	0	0	0	0	1	0	0	0	7116	1299	45	4	396	4	HELZ	17	65082999	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2508397	65082999	16112211	395	161053											
UNC13D	201294	broad.mit.edu	37	chr17	73832735	73832735	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccggatgagggagaggcCgtaggtcagcagggagctga	18	9	1	3	rs149099554		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73832735	T	T	73832735	3	4	205	1	0	0	0	0	1	0	0	0	17113	652	23	4	2132	4	UNC13D	17	73832735	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	8749736	73832735	7362475	396	161054											
TRIM47	91107	broad.mit.edu	37	chr17	73870695	73870695	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaaagtgactgtccaggcGgctctggaaggggtcaatgg	16	9	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73870695	A	A	73870695	3	1	205	1	0	0	0	0	1	0	0	0	16647	1116	39	4	134	4	TRIM47	17	73870695	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	37960	73870695	7324515	397	161055											
MXRA7	439921	broad.mit.edu	37	chr17	74673799	74673799	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaactctgtcgagaagaaaGgacaaagaggaagaaggtgc	14	5	1	5			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74673799	C	C	74673799	1	2	205	0	1	0	0	0	0	0	0	0	10098	1015	35	4		4	MXRA7	17	74673799	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	803104	74673799	6521411	398	161056											
SEC14L1	6397	broad.mit.edu	37	chr17	75187325	75187325	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaattctcgggaacgtacTttgcacattgaggcttataa	9	8	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75187325	C	C	75187325	2	2	205	1	0	0	0	0	0	0	0	1	14094	1596	56	5		5	SEC14L1	17	75187325	Silent	SNP	T	TCGA-73-4662-01A-01D-1265-08	513526	75187325	6007885	399	161057											
GAA	2548	broad.mit.edu	37	chr17	78078846	78078846	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacacggccaccctgacccGtaccacccccaccttcttcc	4	23	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78078846	T	T	78078846	3	4	205	1	0	0	0	0	1	0	0	0	6207	1145	40	3	463	3	GAA	17	78078846	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2891521	78078846	3116364	400	161058											
AZI1	22994	broad.mit.edu	37	chr17	79165040	79165040	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttggccagcgccatgtcGgcctccagccggtgaatgac	12	15	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79165040	T	T	79165040	2	4	205	1	0	0	0	0	0	0	0	1	1245	1103	39	1		1	AZI1	17	79165040	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	1086194	79165040	2030170	401	161059											
C17orf89	284184	broad.mit.edu	37	chr17	79214822	79214822	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggaggctgttaggagggActctgagcttcacacctgtc	15	9	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79214822	C	C	79214822	1	2	205	0	1	0	0	0	0	0	0	0	1907	290	10	5		5	C17orf89	17	79214822	3'UTR	SNP	A	TCGA-73-4662-01A-01D-1265-08	49782	79214822	1980388	402	161060											
SMCHD1	23347	broad.mit.edu	37	chr18	2656197	2656197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggagtccgagctcggGgaccggcctctgcaggtcgg	17	11	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2656197	T	T	2656197	2	4	205	1	0	0	0	0	0	0	0	1	14902	1219	43	2		2	SMCHD1	18	2656197	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08		2656197	75421051	403	161061											
EPB41L3	23136	broad.mit.edu	37	chr18	5419763	5419763	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttcttcccccttcctccGtttgtcctcttcctcgtccc	4	20	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5419763	A	A	5419763	3	1	205	1	0	0	0	0	1	0	0	0	5196	1144	40	4	1854	4	EPB41L3	18	5419763	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	2763566	5419763	72657485	404	161062											
LAMA1	284217	broad.mit.edu	37	chr18	6986344	6986344	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaataaatcttcagcaGccctgataaatatgaatggt	8	7	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6986344	T	T	6986344	3	4	205	1	0	0	0	0	1	0	0	0	8677	971	34	3	4164	3	LAMA1	18	6986344	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1566581	6986344	71090904	405	161063											
MC5R	4161	broad.mit.edu	37	chr18	13825653	13825653	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcttaggctgtgttggttCtaggctagctgctgtctttc	11	8	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13825653	A	A	13825653	1	1	205	0	1	0	0	0	0	0	0	0	9460	928	32	3		3	MC5R	18	13825653	5'Flank	SNP	C	TCGA-73-4662-01A-01D-1265-08	6839309	13825653	64251595	406	161064											
RBBP8	5932	broad.mit.edu	37	chr18	20577615	20577615	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaattaggaggagagacAgtggacatggactgtacatt	12	5	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20577615	G	G	20577615	2	3	205	1	0	0	0	0	0	0	0	1	13213	175	7	5		5	RBBP8	18	20577615	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	6751962	20577615	57499633	407	161065											
C18orf34	374864	broad.mit.edu	37	chr18	30913319	30913319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagctttatcttcaagatgcCattgtaattctataacatca	4	8	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30913319	A	A	30913319	3	1	205	1	0	0	0	0	1	0	0	0	1920	595	21	2	1961	2	C18orf34	18	30913319	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	10335704	30913319	47163929	408	161066											
MOCOS	55034	broad.mit.edu	37	chr18	33780309	33780309	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaccttgccacaggggaggGgtcagaggagttcagcaagg	16	8	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33780309	T	T	33780309	1	4	205	0	1	0	0	0	0	0	0	0	9783	1247	43	2		2	MOCOS	18	33780309	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2866990	33780309	44296939	409	161067											
MBD1	4152	broad.mit.edu	37	chr18	47800612	47800612	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcgcttctggttgctgcCcccgaatttgggcttgtcgc	13	13	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47800612	A	A	47800612	3	1	205	1	0	0	0	0	1	0	0	0	9434	623	22	2	945	2	MBD1	18	47800612	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	14020303	47800612	30276636	410	161068											
CDH7	1005	broad.mit.edu	37	chr18	63477091	63477091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaggcctactacacgctccGagctcaagcgctggataggc	12	14	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63477091	T	T	63477091	3	4	205	1	0	0	0	0	1	0	0	0	3145	1058	37	3	368	3	CDH7	18	63477091	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	15676479	63477091	14600157	411	161069											
CNDP1	84735	broad.mit.edu	37	chr18	72228242	72228242	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacggacccctatgtgctgaCggaggtagacggtcagtgag	15	10	1	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72228242	T	T	72228242	3	4	205	1	0	0	0	0	1	0	0	0	3625	536	19	4	469	4	CNDP1	18	72228242	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	8751151	72228242	5849006	412	161070											
MUM1	84939	broad.mit.edu	37	chr19	1364226	1364226	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagccgcccctcgtggcaCccctcccatcccaagggtgc	9	22	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1364226	A	A	1364226	1	1	205	0	1	0	0	0	0	0	0	0	10079	522	18	3		3	MUM1	19	1364226	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08		1364226	57764757	413	161071											
FZR1	51343	broad.mit.edu	37	chr19	3525945	3525945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacggagaccgcttcatccCctccagagccggagccaact	10	17	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3525945	A	A	3525945	3	1	205	1	0	0	0	0	1	0	0	0	6198	623	22	2	155	2	FZR1	19	3525945	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	2161719	3525945	55603038	414	161072											
ITGB1BP3	27231	broad.mit.edu	37	chr19	3937323	3937323	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccaagccccactatcccCcggggtccgccctcctgcaa	7	22	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3937323	A	A	3937323	1	1	205	0	1	0	0	0	0	0	0	0	7963	638	22	2		2	ITGB1BP3	19	3937323	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	411378	3937323	55191660	415	161073											
SEMA6B	10501	broad.mit.edu	37	chr19	4558196	4558196	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggggtgtgagcaaggGctgggggtgaagagagggtg	25	2	0	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4558196	C	C	4558196	1	2	205	0	1	0	0	0	0	0	0	0	14153	1218	42	4		4	SEMA6B	19	4558196	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	620873	4558196	54570787	416	161074											
PTPRS	5802	broad.mit.edu	37	chr19	5210581	5210581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagcgggcagagcgctcggCcggccagtactggtgacact	16	12	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5210581	A	A	5210581	3	1	205	1	0	0	0	0	1	0	0	0	12919	739	26	3	476	3	PTPRS	19	5210581	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	652385	5210581	53918402	417	161075											
TUBB4	10382	broad.mit.edu	37	chr19	6496231	6496231	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgccggctccggattgGcctagagagggaaggggagg	19	7	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6496231	A	A	6496231	2	1	205	1	0	0	0	0	0	0	0	1	16884	1217	42	4		4	TUBB4	19	6496231	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	1285650	6496231	52632752	418	161076											
ADAMTS10	81794	broad.mit.edu	37	chr19	8666048	8666048	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctggggaacccagtagagCaattaagccctgccctgctg	11	12	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8666048	T	T	8666048	1	4	205	0	1	0	0	0	0	0	0	0	256	725	25	4		4	ADAMTS10	19	8666048	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2169817	8666048	50462935	419	161077											
MUC16	94025	broad.mit.edu	37	chr19	9066581	9066581	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcattttgggaaatgctggtCtctctcagtccaggagtcaa	11	9	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9066581	G	G	9066581	3	3	205	1	0	0	0	0	1	0	0	0	10067	912	32	4	22986	4	MUC16	19	9066581	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	400533	9066581	50062402	420	161078											
COL5A3	50509	broad.mit.edu	37	chr19	10081551	10081551	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggagcatctgcaggggccTtgggtaccccactagcccac	13	15	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10081551	A	A	10081551	1	1	205	0	1	0	0	0	0	0	0	0	3730	1624	56	5		5	COL5A3	19	10081551	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	1014970	10081551	49047432	421	161079											
FDX1L	112812	broad.mit.edu	37	chr19	10421173	10421173	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttcatgtcagtggggctTggggacatggccatccacgt	15	9	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10421173	C	C	10421173	3	2	205	1	0	0	0	0	1	0	0	0	5862	1821	63	5	14	5	FDX1L	19	10421173	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	339622	10421173	48707810	422	161080											
FDX1L	112812	broad.mit.edu	37	chr19	10421195	10421195	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggacatggccatccacgtaGaagttcctggtgatcttggg	14	9	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10421195	C	C	10421195	3	2	205	1	0	0	0	0	1	0	0	0	5862	933	33	4	36	4	FDX1L	19	10421195	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	22	10421195	48707788	423	161081											
KRI1	65095	broad.mit.edu	37	chr19	10665777	10665777	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttactcttctcggcagagTgacttgaagacctgccgctt	10	12	2	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10665777	G	G	10665777	2	3	205	1	0	0	0	0	0	0	0	1	8515	1683	59	5		5	KRI1	19	10665777	Silent	SNP	T	TCGA-73-4662-01A-01D-1265-08	244582	10665777	48463206	424	161082											
EMR3	84658	broad.mit.edu	37	chr19	14743590	14743590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtattctagctaactcaGgttctcattaactgtgatgg	8	8	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14743590	T	T	14743590	1	4	205	0	1	0	0	0	0	0	0	0	5148	1015	35	2		2	EMR3	19	14743590	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	4077813	14743590	44385393	425	161083											
CASP14	23581	broad.mit.edu	37	chr19	15164396	15164396	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctctggaacacatgtttcGgcagctgagattcgaaagca	11	9	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15164396	A	A	15164396	3	1	205	1	0	0	0	0	1	0	0	0	2696	1116	39	4	137	4	CASP14	19	15164396	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	420806	15164396	43964587	426	161084											
BRD4	23476	broad.mit.edu	37	chr19	15360069	15360072	+	Intron	DEL	ATTA	-	-													ctggaactgaagaccgttttAttaagagtccgtgtccaatg							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	15360072	-	-	15360069	6	5	205	0	1	1	0	1	0	0	0	0	1513	464	16	0		0	BRD4	19	15360069	Intron	DEL	ATTA	TCGA-73-4662-01A-01D-1265-08	195673	15360069	43768914	427	161085											
FAM129C	199786	broad.mit.edu	37	chr19	17641793	17641793	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagacctttgccattgcCataggatgactttaaatatg	7	10	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17641793	T	T	17641793	1	4	205	0	1	0	0	0	0	0	0	0	5484	609	21	4		4	FAM129C	19	17641793	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2281724	17641793	41487190	428	161086											
UNC13A	23025	broad.mit.edu	37	chr19	17735612	17735612	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagggaggtggcctaaatgtCccctcgggccccctgcaggt	14	14	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17735612	A	A	17735612	1	1	205	0	1	0	0	0	0	0	0	0	17110	870	30	3		3	UNC13A	19	17735612	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	93819	17735612	41393371	429	161087											
ZNF737	100129842	broad.mit.edu	37	chr19	20728561	20728561	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatgaatgactttcacatAtttatcacactgaaatattt	3	6	2	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20728561	C	C	20728561	3	2	205	1	0	0	0	0	1	0	0	0	18255	449	16	5	1166	5	ZNF737	19	20728561	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	2992949	20728561	38400422	430	161088											
ZNF98	148198	broad.mit.edu	37	chr19	22605017	22605017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catttctaggcttccaagggGtcctggcatcttagctgtgg	12	10	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22605017	T	T	22605017	3	4	205	1	0	0	0	0	1	0	0	0	18332	1261	44	3	1724	3	ZNF98	19	22605017	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1876456	22605017	36523966	431	161089											
RYR1	6261	broad.mit.edu	37	chr19	39002837	39002837	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccaccccaacccctggtctCctagactctccgattccaga	5	20	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39002837	T	T	39002837	1	4	205	0	1	0	0	0	0	0	0	0	13879	870	30	4		4	RYR1	19	39002837	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	16397820	39002837	20126146	432	161090											
GMFG	9535	broad.mit.edu	37	chr19	39823874	39823874	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcggatcacaaggtcaGgaaatcattcagaccatcct	10	11	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39823874	T	T	39823874	1	4	205	0	1	0	0	0	0	0	0	0	6554	1015	35	2		2	GMFG	19	39823874	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	821037	39823874	19305109	433	161091											
PLEKHG2	64857	broad.mit.edu	37	chr19	39907024	39907024	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggagaacagcagcagcgcCgggggtattgccgagtgctt	16	9	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39907024	T	T	39907024	2	4	205	1	0	0	0	0	0	0	0	1	12164	639	23	4		4	PLEKHG2	19	39907024	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	83150	39907024	19221959	434	161092											
PSG8	440533	broad.mit.edu	37	chr19	43262242	43262242	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtcctgcagtgtactttgtGacacccaatagaaagagggt	12	8	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43262242	T	T	43262242	2	4	205	1	0	0	0	0	0	0	0	1	12767	1277	45	3		3	PSG8	19	43262242	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	3355218	43262242	15866741	435	161093											
PSG1	5669	broad.mit.edu	37	chr19	43376393	43376393	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgcctgcttcatgtgGgagaagcacagactttctca	12	10	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43376393	T	T	43376393	1	4	205	0	1	0	0	0	0	0	0	0	12759	1247	43	2		2	PSG1	19	43376393	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	114151	43376393	15752590	436	161094											
ZNF225	7768	broad.mit.edu	37	chr19	44634920	44634920	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctatatttattaaaatttcAggctatgtcctaagtatgaa	5	6	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44634920	T	T	44634920	1	4	205	0	1	0	0	0	0	0	0	0	17905	203	7	5		5	ZNF225	19	44634920	Intron	SNP	A	TCGA-73-4662-01A-01D-1265-08	1258527	44634920	14494063	437	161095											
ZFP112	7771	broad.mit.edu	37	chr19	44832283	44832283	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtggaccctctgatggGccaaaagtgttgaggcctta	13	10	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44832283	A	A	44832283	3	1	205	1	0	0	0	0	1	0	0	0	17764	1203	42	4	700	4	ZFP112	19	44832283	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	197363	44832283	14296700	438	161096											
ZNF615	284370	broad.mit.edu	37	chr19	52497466	52497466	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccacattggctacatgtgTaaggtttccctcccatatga	7	12	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52497466	C	C	52497466	3	2	205	1	0	0	0	0	1	0	0	0	18167	1638	57	5	1336	5	ZNF615	19	52497466	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	7665183	52497466	6631517	439	161097											
LILRB2	10288	broad.mit.edu	37	chr19	54782221	54782221	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggctgaggtcacaggaCtcatggggaattcagcctgg	16	9	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54782221	T	T	54782221	3	4	205	1	0	0	0	0	1	0	0	0	8863	565	20	4	677	4	LILRB2	19	54782221	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	2284755	54782221	4346762	440	161098											
BRSK1	84446	broad.mit.edu	37	chr19	55814218	55814218	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccgcgagaggctgcatcgCgagctgcgcagtgaggagta	17	10	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55814218	A	A	55814218	2	1	205	1	0	0	0	0	0	0	0	1	1532	755	27	3		3	BRSK1	19	55814218	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	1031997	55814218	3314765	441	161099											
NLRP5	126206	broad.mit.edu	37	chr19	56539603	56539603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagaagcttctgcactgGgtctctctgttgggtcagca	12	10	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56539603	T	T	56539603	3	4	205	1	0	0	0	0	1	0	0	0	10575	1241	43	2	2030	2	NLRP5	19	56539603	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	725385	56539603	2589380	442	161100											
ZNF419	79744	broad.mit.edu	37	chr19	58005275	58005275	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacatcgaaaagttcacatTggagaaaagccttttaagtg	8	7	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58005275	G	G	58005275	3	3	205	1	0	0	0	0	1	0	0	0	18023	1800	63	5	1371	5	ZNF419	19	58005275	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	1465672	58005275	1123708	443	161101											
TRIM28	10155	broad.mit.edu	37	chr19	59060467	59060467	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccagccacccgtcttcaagGtcttcccaggcagtaccact	8	17	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59060467	C	C	59060467	3	2	205	1	0	0	0	0	1	0	0	0	16626	1261	44	4	1568	4	TRIM28	19	59060467	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1055192	59060467	68516	444	161102											
C20orf26	26074	broad.mit.edu	37	chr20	20168807	20168807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttggaaaatcatatggcaGggggcagtggaggtagagtt	17	3	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20168807	T	T	20168807	1	4	205	0	1	0	0	0	0	0	0	0	2128	1015	35	2		2	C20orf26	20	20168807	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08		20168807	42856713	445	161103											
C20orf26	26074	broad.mit.edu	37	chr20	20246079	20246079	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaggaagagcatcagtgTtattctgctgacttgcccag	12	8	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20246079	G	G	20246079	1	3	205	0	1	0	0	0	0	0	0	0	2128	1740	60	5		5	C20orf26	20	20246079	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	77272	20246079	42779441	446	161104											
ENTPD6	955	broad.mit.edu	37	chr20	25199194	25199194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattcccacagctacctcgGgctcgggctgatgtcggcac	11	15	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25199194	T	T	25199194	3	4	205	1	0	0	0	0	1	0	0	0	5185	1232	43	2	928	2	ENTPD6	20	25199194	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	4953115	25199194	37826326	447	161105											
XKR7	343702	broad.mit.edu	37	chr20	30584719	30584719	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaacgccgcgctcaccgGcttctggtactccagccgca	12	16	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30584719	A	A	30584719	3	1	205	1	0	0	0	0	1	0	0	0	17563	1203	42	4	1209	4	XKR7	20	30584719	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	5385525	30584719	32440801	448	161106											
PIGU	128869	broad.mit.edu	37	chr20	33162841	33162841	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatgcagaatccaaggccatCgttgaatgcttgaggctgca	11	9	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33162841	T	T	33162841	1	4	205	0	1	0	0	0	0	0	0	0	11995	899	31	4		4	PIGU	20	33162841	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	2578122	33162841	29862679	449	161107											
CTNNBL1	56259	broad.mit.edu	37	chr20	36361518	36361518	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggctggccctgtaaaaCgtaattttgggccaaatact	10	8	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36361518	T	T	36361518	1	4	205	0	1	0	0	0	0	0	0	0	4052	551	19	4		4	CTNNBL1	20	36361518	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	3198677	36361518	26664002	450	161108											
STAU1	6780	broad.mit.edu	37	chr20	47770537	47770537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccgagagtaagggtcaaCaggcttatacattggttttt	10	7	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47770537	A	A	47770537	3	1	205	1	0	0	0	0	1	0	0	0	15390	478	17	3	1518	3	STAU1	20	47770537	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	11409019	47770537	15254983	451	161109											
CBLN4	140689	broad.mit.edu	37	chr20	54573585	54573585	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgggtcatccctcaccTggatgaacatcatggagaaa	12	9	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54573585	A	A	54573585	1	1	205	0	1	0	0	0	0	0	0	0	2733	1595	55	5		5	CBLN4	20	54573585	3'UTR	SNP	T	TCGA-73-4662-01A-01D-1265-08	6803048	54573585	8451935	452	161110											
LAMA5	3911	broad.mit.edu	37	chr20	60927018	60927018	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccatgagatggcccagcaGcgtgttggtacgcaggaagc	14	12	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60927018	T	T	60927018	3	4	205	1	0	0	0	0	1	0	0	0	8681	962	34	3	10586	3	LAMA5	20	60927018	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	6353433	60927018	2098502	453	161111											
TPTE	7179	broad.mit.edu	37	chr21	10935066	10935066	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctatttcctagggggaacCtaaaatggttattactttta	8	6	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10935066	A	A	10935066	1	1	205	0	1	0	0	0	0	0	0	0	16554	696	24	2		2	TPTE	21	10935066	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08		10935066	37194829	454	161112											
GABPA	2551	broad.mit.edu	37	chr21	27135314	27135314	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccctttcttttctctcGctttgccttcagctttattc	3	14	3	0	rs148104793	by1000genomes	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27135314	T	T	27135314	1	4	205	0	1	0	0	0	0	0	0	0	6217	1102	38	3		3	GABPA	21	27135314	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	16200248	27135314	20994581	455	161113											
ADAMTS5	11096	broad.mit.edu	37	chr21	28337760	28337760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcgcctagcaccaccacCttcaccacggccaggcggat	9	17	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28337760	A	A	28337760	3	1	205	1	0	0	0	0	1	0	0	0	269	680	24	2	1873	2	ADAMTS5	21	28337760	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	1202446	28337760	19792135	456	161114											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31743890	31743890	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccagccagtacttgatgCcagagaaaggatgaagagct	12	8	0	4			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31743890	T	T	31743890	1	4	205	0	1	0	0	0	0	0	0	0	8594	754	26	4		4	KRTAP13-2	21	31743890	3'UTR	SNP	C	TCGA-73-4662-01A-01D-1265-08	3406130	31743890	16386005	457	161115											
KRTAP6-3	337968	broad.mit.edu	37	chr21	31964725	31964725	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggccctctgcggagaagTgtccatactgaagtcaccta	10	11	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31964725	C	C	31964725	1	2	205	0	1	0	0	0	0	0	0	0	8643	1711	59	5		5	KRTAP6-3	21	31964725	5'Flank	SNP	T	TCGA-73-4662-01A-01D-1265-08	220835	31964725	16165170	458	161116											
TIAM1	7074	broad.mit.edu	37	chr21	32638630	32638630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaggtgctgagctgccgcGgactcgcccgcgtttccatc	13	15	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32638630	T	T	32638630	3	4	205	1	0	0	0	0	1	0	0	0	16013	1116	39	1	4216	1	TIAM1	21	32638630	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	673905	32638630	15491265	459	161117											
HLCS	3141	broad.mit.edu	37	chr21	38308720	38308720	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatacccacagatacccaaaGatcaccaaatccatgctgcc	4	15	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38308720	C	C	38308720	1	2	205	0	1	0	0	0	0	0	0	0	7280	957	33	4		4	HLCS	21	38308720	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	5670090	38308720	9821175	460	161118											
C2CD2	25966	broad.mit.edu	37	chr21	43319393	43319393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctccggatgggatggggCgtcctcctggtgggtgctgt	17	11	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43319393	A	A	43319393	3	1	205	1	0	0	0	0	1	0	0	0	2174	768	27	3	459	3	C2CD2	21	43319393	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	5010673	43319393	4810502	461	161119											
KRTAP10-11	386678	broad.mit.edu	37	chr21	46067170	46067170	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacctcctcctgccagtcCagctgctgccgcccggcctc	8	23	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46067170	A	A	46067170	2	1	205	1	0	0	0	0	0	0	0	1	8578	581	21	2		2	KRTAP10-11	21	46067170	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	2747777	46067170	2062725	462	161120											
MCM3AP	8888	broad.mit.edu	37	chr21	47655246	47655246	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcaacttcctcttcccttGaactccggatcagcctttcc	6	16	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47655246	A	A	47655246	3	1	205	1	0	0	0	0	1	0	0	0	9481	1294	45	4	67	4	MCM3AP	21	47655246	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1588076	47655246	474649	463	161121											
PRAME	23532	broad.mit.edu	37	chr22	22890449	22890449	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcacatcctggctttagtgTccaagtatgcagaatgaagc	10	9	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22890449	C	C	22890449	1	2	205	0	1	0	0	0	0	0	0	0	12525	1682	58	5		5	PRAME	22	22890449	3'UTR	SNP	T	TCGA-73-4662-01A-01D-1265-08		22890449	28414117	464	161122											
PRAME	23532	broad.mit.edu	37	chr22	22893228	22893228	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaggagcacatcaagtccaTcaagcacagctttgaaggtc	9	11	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22893228	A	A	22893228	3	1	205	1	0	0	0	0	1	0	0	0	12525	1435	50	5	1236	5	PRAME	22	22893228	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	2779	22893228	28411338	465	161123											
SGSM1	129049	broad.mit.edu	37	chr22	25251480	25251480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccctgaaaatcaccccaGgcctcatccctctgtctccc	6	19	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25251480	T	T	25251480	1	4	205	0	1	0	0	0	0	0	0	0	14335	1015	35	2		2	SGSM1	22	25251480	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2358252	25251480	26053086	466	161124											
KCNJ4	3761	broad.mit.edu	37	chr22	38823842	38823842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgccaccacccgccgccGggccccccgccgcaggcacc	10	26	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38823842	T	T	38823842	3	4	205	1	0	0	0	0	1	0	0	0	8123	1116	39	1	1045	1	KCNJ4	22	38823842	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	13572362	38823842	12480724	467	161125											
GPR143	4935	broad.mit.edu	37	chrX	9693874	9693874	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttcaattgtgctggcaTcagaacctggagaggaaaag	12	6	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9693874	C	C	9693874	3	2	205	1	0	0	0	0	1	0	0	0	6716	1435	50	5	91	5	GPR143	23	9693874	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08		9693874	145576686	468	161126											
WWC3	55841	broad.mit.edu	37	chrX	10106982	10106982	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccgagcggcaggtgggGgtcccctgtggccagctccc	18	14	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10106982	T	T	10106982	1	4	205	0	1	0	0	0	0	0	0	0	17540	1247	43	2		2	WWC3	23	10106982	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	413108	10106982	145163578	469	161127											
FRMPD4	9758	broad.mit.edu	37	chrX	12722577	12722577	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacaccttgtcaaagcaaaTcaaaacttggtaccaccggg	7	12	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12722577	C	C	12722577	2	2	205	1	0	0	0	0	0	0	0	1	6119	1432	50	5		5	FRMPD4	23	12722577	Silent	SNP	T	TCGA-73-4662-01A-01D-1265-08	2615595	12722577	142547983	470	161128											
TLR8	51311	broad.mit.edu	37	chrX	12924813	12924813	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttacggaatgaaaaattaGaacaacagaaacatggtaag	9	4	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12924813	T	T	12924813	1	4	205	0	1	0	0	0	0	0	0	0	16080	957	33	3		3	TLR8	23	12924813	5'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	202236	12924813	142345747	471	161129											
GLRA2	2742	broad.mit.edu	37	chrX	14625540	14625540	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttggctcaaaactccctCaacagataagattcctatac	5	11	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14625540	A	A	14625540	1	1	205	0	1	0	0	0	0	0	0	0	6519	841	29	3		3	GLRA2	23	14625540	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1700727	14625540	140645020	472	161130											
PPEF1	5475	broad.mit.edu	37	chrX	18802186	18802186	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagaagtaatgttggcaTgaatcttctctcagggattt	11	5	3	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18802186	C	C	18802186	1	2	205	0	1	0	0	0	0	0	0	0	12403	1479	51	5		5	PPEF1	23	18802186	Intron	SNP	T	TCGA-73-4662-01A-01D-1265-08	4176646	18802186	136468374	473	161131											
PHEX	5251	broad.mit.edu	37	chrX	22094595	22094595	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcctgcatgaatgagagtGagtgatgaagaaaactaaat	10	5	0	6			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22094595	T	T	22094595	1	4	205	0	1	0	0	0	0	0	0	0	11914	1305	45	3		3	PHEX	23	22094595	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	3292409	22094595	133175965	474	161132											
PHEX	5251	broad.mit.edu	37	chrX	22132530	22132530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaattgttttcagccatgGgttttatccaaatgaagttt	8	5	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22132530	T	T	22132530	1	4	205	0	1	0	0	0	0	0	0	0	11914	1247	43	2		2	PHEX	23	22132530	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	37935	22132530	133138030	475	161133											
DMD	1756	broad.mit.edu	37	chrX	31462517	31462517	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaacattacatgaaaaaaGtactttcattgttctttaca	4	6	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31462517	T	T	31462517	1	4	205	0	1	0	0	0	0	0	0	0	4620	1044	36	3		3	DMD	23	31462517	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	9329987	31462517	123808043	476	161134											
SSX3	10214	broad.mit.edu	37	chrX	48207047	48207047	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccttttgggtcctatgatGgagaatagttggaaagtgag	13	6	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48207047	A	A	48207047	1	1	205	0	1	0	0	0	0	0	0	0	15323	1363	47	4		4	SSX3	23	48207047	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	16744530	48207047	107063513	477	161135											
SSX3	10214	broad.mit.edu	37	chrX	48207144	48207144	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcctcccaagtgcccatgGgccttctttatccagttttt	6	14	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48207144	A	A	48207144	1	1	205	0	1	0	0	0	0	0	0	0	15323	1247	43	4		4	SSX3	23	48207144	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	97	48207144	107063416	478	161136											
GRIPAP1	56850	broad.mit.edu	37	chrX	48840352	48840352	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctagtcacccaggaccatCtggtagaccatctcccttct	7	15	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48840352	T	T	48840352	1	4	205	0	1	0	0	0	0	0	0	0	6855	928	32	4		4	GRIPAP1	23	48840352	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	633208	48840352	106430208	479	161137											
PPP1R3F	89801	broad.mit.edu	37	chrX	49127100	49127100	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagggcgcgggcgatggGgcgcgcctcgacttcgtggt	20	11	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49127100	T	T	49127100	2	4	205	1	0	0	0	0	0	0	0	1	12476	1219	43	2		2	PPP1R3F	23	49127100	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	286748	49127100	106143460	480	161138											
HUWE1	10075	broad.mit.edu	37	chrX	53607798	53607798	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcgaaacttaccagttccTgagcctcgaggggcaggaag	13	10	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53607798	A	A	53607798	2	1	205	1	0	0	0	0	0	0	0	1	7531	1567	55	5		5	HUWE1	23	53607798	Silent	SNP	T	TCGA-73-4662-01A-01D-1265-08	4480698	53607798	101662762	481	161139											
HUWE1	10075	broad.mit.edu	37	chrX	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-													gggccagggccggggccgggGccggggccggggccggggcc					rs78801842	by1000genomes	TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53652852	-	-	53652829	6	5	205	0	1	1	0	1	0	0	0	0	7531	1218	42	0		0	HUWE1	23	53652829	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	TCGA-73-4662-01A-01D-1265-08	45031	53652829	101617731	482	161140											
MAGED2	10916	broad.mit.edu	37	chrX	54835717	54835717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgggcttcaacttgaccCaggccttctccccttcaggc	9	16	3	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54835717	A	A	54835717	1	1	205	0	1	0	0	0	0	0	0	0	9276	609	21	2		2	MAGED2	23	54835717	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1182888	54835717	100434843	483	161141											
DGAT2L6	347516	broad.mit.edu	37	chrX	69421829	69421829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgtggtgggtggagctGctgaagctctcttgtgccga	15	7	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69421829	T	T	69421829	3	4	205	1	0	0	0	0	1	0	0	0	4499	1319	46	3	580	3	DGAT2L6	23	69421829	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	14586112	69421829	85848731	484	161142											
DGAT2L6	347516	broad.mit.edu	37	chrX	69424475	69424475	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacatctgggatgggcaatGggtgtggttaagagcagggt	17	5	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69424475	A	A	69424475	1	1	205	0	1	0	0	0	0	0	0	0	4499	1363	47	4		4	DGAT2L6	23	69424475	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	2646	69424475	85846085	485	161143											
SLC7A3	84889	broad.mit.edu	37	chrX	70147433	70147433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccatcctctgccatcgCgtagatcacccgaggcatgg	12	14	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70147433	A	A	70147433	3	1	205	1	0	0	0	0	1	0	0	0	14812	768	27	3	799	3	SLC7A3	23	70147433	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	722958	70147433	85123127	486	161144											
NLGN3	54413	broad.mit.edu	37	chrX	70387665	70387665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgggtaaggagaaaataGggtttttttcctctttgaga	12	4	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70387665	T	T	70387665	1	4	205	0	1	0	0	0	0	0	0	0	10558	1015	35	2		2	NLGN3	23	70387665	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	240232	70387665	84882895	487	161145											
TAF1	6872	broad.mit.edu	37	chrX	70679627	70679627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaactggactggatagGcgctcttggccacatatgct	11	11	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70679627	T	T	70679627	1	4	205	0	1	0	0	0	0	0	0	0	15632	1218	42	3		3	TAF1	23	70679627	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	291962	70679627	84590933	488	161146											
ACRC	93953	broad.mit.edu	37	chrX	70823472	70823472	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtcatgtgaagcctgcCatccaggaacctccaatagt	9	11	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70823472	A	A	70823472	2	1	205	1	0	0	0	0	0	0	0	1	171	581	21	2		2	ACRC	23	70823472	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	143845	70823472	84447088	489	161147											
ACRC	93953	broad.mit.edu	37	chrX	70832808	70832808	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccattaactcagaaagatggGacccgtattgtgccccacgt	9	12	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70832808	C	C	70832808	2	2	205	1	0	0	0	0	0	0	0	1	171	1161	41	4		4	ACRC	23	70832808	Silent	SNP	G	TCGA-73-4662-01A-01D-1265-08	9336	70832808	84437752	490	161148											
NHSL2	340527	broad.mit.edu	37	chrX	71359765	71359765	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgggatgagtatctcCatccgaagcaaaactaaggt	10	9	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71359765	T	T	71359765	2	4	205	1	0	0	0	0	0	0	0	1	10507	581	21	4		4	NHSL2	23	71359765	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	526957	71359765	83910795	491	161149											
NAP1L2	4674	broad.mit.edu	37	chrX	72434489	72434489	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggctgctcggggataaaaGatggtgctgaggctttgaga	16	6	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72434489	T	T	72434489	1	4	205	0	1	0	0	0	0	0	0	0	10251	957	33	3		3	NAP1L2	23	72434489	5'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	1074724	72434489	82836071	492	161150											
ATRX	546	broad.mit.edu	37	chrX	76845335	76845335	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggggtttatctttatcttcTgtcttctccctactagctaa	6	10	5	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76845335	A	A	76845335	2	1	205	1	0	0	0	0	0	0	0	1	1212	1567	55	5		5	ATRX	23	76845335	Silent	SNP	T	TCGA-73-4662-01A-01D-1265-08	4410846	76845335	78425225	493	161151											
BRWD3	254065	broad.mit.edu	37	chrX	79932535	79932535	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggtcttccaatttctttttCcattgccatgttgctttctg	6	10	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79932535	G	G	79932535	3	3	205	1	0	0	0	0	1	0	0	0	1535	855	30	4	430	4	BRWD3	23	79932535	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	3087200	79932535	75338025	494	161152											
BRWD3	254065	broad.mit.edu	37	chrX	79939515	79939515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actaataatcatacccttgaCtttttattagaggtataagc	5	7	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79939515	A	A	79939515	3	1	205	1	0	0	0	0	1	0	0	0	1535	564	20	3	1201	3	BRWD3	23	79939515	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	6980	79939515	75331045	495	161153											
POU3F4	5456	broad.mit.edu	37	chrX	82763325	82763325	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tataactagtaggggatcctCaccgaccatggccacagctg	10	12	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763325	A	A	82763325	1	1	205	0	1	0	0	0	0	0	0	0	12373	841	29	3		3	POU3F4	23	82763325	5'UTR	SNP	C	TCGA-73-4662-01A-01D-1265-08	2823810	82763325	72507235	496	161154											
CPXCR1	53336	broad.mit.edu	37	chrX	88008550	88008550	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatatgatctatcaggtagaAaccaacccaataaacaggga	7	8	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88008550	T	T	88008550	3	4	205	1	0	0	0	0	1	0	0	0	3868	11	1	5	137	5	CPXCR1	23	88008550	Missense_Mutation	SNP	A	TCGA-73-4662-01A-01D-1265-08	5245225	88008550	67262010	497	161155											
CENPI	2491	broad.mit.edu	37	chrX	100403112	100403113	+	Missense_Mutation	DNP	CC	AA	AA													gtttaaatgtagtccatcatCcttctttcttgagttacgct							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	100403113	AA	AA	100403112	3	1	205	1	0	0	0	0	1	0	0	0	3263	855	30	3	2126	3	CENPI	23	100403112	Missense_Mutation	DNP	CC	TCGA-73-4662-01A-01D-1265-08	12394562	100403112	54867448	498	161156											
BTK	695	broad.mit.edu	37	chrX	100613365	100613365	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggtgcttctcagccagGtaatactggctctgaggtgt	12	8	2	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100613365	T	T	100613365	4	4	205	1	0	0	0	0	0	1	0	0	1567	1256	44	3	976	3	BTK	23	100613365	Nonsense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	210253	100613365	54657195	499	161157											
NXF3	56000	broad.mit.edu	37	chrX	102332726	102332726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaaggacacctccccacCcgctacaaggatctttttcc	7	15	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102332726	A	A	102332726	1	1	205	0	1	0	0	0	0	0	0	0	10880	638	22	2		2	NXF3	23	102332726	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1719361	102332726	52937834	500	161158											
TCEAL5	340543	broad.mit.edu	37	chrX	102528926	102528926	+	Frame_Shift_Del	DEL	C	-	-													ccctacctccgcccctcactCccctcacaccccgttggccc							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102528926	-	-	102528926	7	5	205	1	0	1	0	1	0	0	0	0	15796	855	30	0	58	0	TCEAL5	23	102528926	Frame_Shift_Del	DEL	C	TCGA-73-4662-01A-01D-1265-08	196200	102528926	52741634	501	161159											
TCEAL3	85012	broad.mit.edu	37	chrX	102864328	102864328	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccccggaaagcaaaaagAaaaacggacagggggacgga	15	8	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102864328	G	G	102864328	2	3	205	1	0	0	0	0	0	0	0	1	15794	243	9	5		5	TCEAL3	23	102864328	Silent	SNP	A	TCGA-73-4662-01A-01D-1265-08	335402	102864328	52406232	502	161160											
RAB9B	51209	broad.mit.edu	37	chrX	103080712	103080712	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagagcagggatttcccactCatttttgcagcaccagaagg	10	10	1	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103080712	A	A	103080712	3	1	205	1	0	0	0	0	1	0	0	0	13067	826	29	3	606	3	RAB9B	23	103080712	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	216384	103080712	52189848	503	161161											
TMSB15B	286527	broad.mit.edu	37	chrX	103220240	103220240	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taaacctgtgtgtttgtagaGatttcagacatcttctgatt	8	6	3	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103220240	T	T	103220240	1	4	205	0	1	0	0	0	0	0	0	0	16379	957	33	3		3	TMSB15B	23	103220240	3'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	139528	103220240	52050320	504	161162											
MUM1L1	139221	broad.mit.edu	37	chrX	105449798	105449798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaaatgtaccacaaaaaCagtccgattcaccccctcat	3	15	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105449798	A	A	105449798	3	1	205	1	0	0	0	0	1	0	0	0	10080	479	17	3	375	3	MUM1L1	23	105449798	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	2229558	105449798	49820762	505	161163											
MID2	11043	broad.mit.edu	37	chrX	107169847	107169847	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatatatggtgtcttacaCaactcagataattcataaat	4	7	4	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107169847	A	A	107169847	1	1	205	0	1	0	0	0	0	0	0	0	9671	493	17	3		3	MID2	23	107169847	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1720049	107169847	48100713	506	161164											
AMOT	154796	broad.mit.edu	37	chrX	112024258	112024258	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgcatgcacgacagctgctCtgtcttgctcggctccttcc	9	17	2	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112024258	A	A	112024258	4	1	205	1	0	0	0	0	0	1	0	0	582	922	32	3	937	3	AMOT	23	112024258	Nonsense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	4854411	112024258	43246302	507	161165											
AMOT	154796	broad.mit.edu	37	chrX	112058796	112058796	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtggctgctgctgctgCtgttgttggtggtgatggtg	18	6	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112058796	T	T	112058796	2	4	205	1	0	0	0	0	0	0	0	1	582	796	28	4		4	AMOT	23	112058796	Silent	SNP	C	TCGA-73-4662-01A-01D-1265-08	34538	112058796	43211764	508	161166											
KLHL13	90293	broad.mit.edu	37	chrX	117033333	117033333	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagcacatgagctccttTtggaaagtatcatgagtaat	8	7	2	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117033333	C	C	117033333	2	2	205	1	0	0	0	0	0	0	0	1	8440	1838	64	5		5	KLHL13	23	117033333	Silent	SNP	T	TCGA-73-4662-01A-01D-1265-08	4974537	117033333	38237227	509	161167											
RHOXF1	158800	broad.mit.edu	37	chrX	119249586	119249586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcggggatcatgccgccatCgcggttcatgccgttctcgt	12	14	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119249586	A	A	119249586	3	1	205	1	0	0	0	0	1	0	0	0	13456	884	31	3	379	3	RHOXF1	23	119249586	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	2216253	119249586	36020974	510	161168											
SASH3	54440	broad.mit.edu	37	chrX	128927572	128927572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgtatttcccaaggtcCctacctccacccccatattc	5	16	0	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128927572	A	A	128927572	1	1	205	0	1	0	0	0	0	0	0	0	13961	638	22	2		2	SASH3	23	128927572	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	9677986	128927572	26342988	511	161169											
IGSF1	3547	broad.mit.edu	37	chrX	130420644	130420644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccctggtctgtccaggGtcatggggcctctggtgctg	14	14	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130420644	T	T	130420644	3	4	205	1	0	0	0	0	1	0	0	0	7666	1261	44	3	4158	3	IGSF1	23	130420644	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1493072	130420644	24849916	512	161170											
BRS3	680	broad.mit.edu	37	chrX	135574142	135574142	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatcccgaaagagaattGccagaacggtattggtgttg	12	6	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135574142	T	T	135574142	3	4	205	1	0	0	0	0	1	0	0	0	1531	1319	46	3	818	3	BRS3	23	135574142	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	5153498	135574142	19696418	513	161171											
VGLL1	51442	broad.mit.edu	37	chrX	135630900	135630900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgtccctggctaggaggGcctctgttcggcctggggag	16	13	1	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135630900	T	T	135630900	3	4	205	1	0	0	0	0	1	0	0	0	17285	1203	42	3	373	3	VGLL1	23	135630900	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	56758	135630900	19639660	514	161172											
RBMX	27316	broad.mit.edu	37	chrX	135960160	135960160	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttggagggcctctacttCttggaggtggaggcggtcca	15	10	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135960160	A	A	135960160	3	1	205	1	0	0	0	0	1	0	0	0	13259	913	32	3	952	3	RBMX	23	135960160	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	329260	135960160	19310400	515	161173											
AFF2	2334	broad.mit.edu	37	chrX	147744260	147744260	+	Frame_Shift_Del	DEL	C	-	-													ccagttcaaagactaaactgCcaaagttcaccatcctccaa							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	147744260	-	-	147744260	7	5	205	1	0	1	0	1	0	0	0	0	357	739	26	0	1022	0	AFF2	23	147744260	Frame_Shift_Del	DEL	C	TCGA-73-4662-01A-01D-1265-08	11784100	147744260	7526300	516	161174											
AFF2	2334	broad.mit.edu	37	chrX	148048333	148048333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaggagggagacactcCaaaaaaggcatcctctgcca	9	13	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148048333	A	A	148048333	3	1	205	1	0	0	0	0	1	0	0	0	357	594	21	2	3036	2	AFF2	23	148048333	Missense_Mutation	SNP	C	TCGA-73-4662-01A-01D-1265-08	304073	148048333	7222227	517	161175											
IDS	3423	broad.mit.edu	37	chrX	148586522	148586522	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggaggaaggaagggaGggaggaagggagaagagatg	23	0	0	2			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148586522	T	T	148586522	1	4	205	0	1	0	0	0	0	0	0	0	7573	1015	35	2		2	IDS	23	148586522	Intron	SNP	G	TCGA-73-4662-01A-01D-1265-08	538189	148586522	6684038	518	161176											
MTMR1	8776	broad.mit.edu	37	chrX	149900973	149900973	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtaattagagcatacattCtttaggaactgtactaatat	7	5	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149900973	G	G	149900973	1	3	205	0	1	0	0	0	0	0	0	0	10032	928	32	4		4	MTMR1	23	149900973	Intron	SNP	C	TCGA-73-4662-01A-01D-1265-08	1314451	149900973	5369587	519	161177											
MAGEA4	4103	broad.mit.edu	37	chrX	151092363	151092363	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgccttacccactaccaTcagcttcacttgctggaggc	7	16	3	0			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151092363	A	A	151092363	3	1	205	1	0	0	0	0	1	0	0	0	9258	1435	50	5	229	5	MAGEA4	23	151092363	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	1191390	151092363	4178197	520	161178											
MAGEA3	4102	broad.mit.edu	37	chrX	151935196	151935196	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccagaccccctcccactgGccctggctgcaactcgtgct	9	20	0	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151935196	C	C	151935196	1	2	205	0	1	0	0	0	0	0	0	0	9257	1218	42	4		4	MAGEA3	23	151935196	3'UTR	SNP	G	TCGA-73-4662-01A-01D-1265-08	842833	151935196	3335364	521	161179											
NSDHL	50814	broad.mit.edu	37	chrX	152034484	152034484	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgaggcagccaggaacgGcaagatgaagttcgtgattg	14	8	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152034484	T	T	152034484	3	4	205	1	0	0	0	0	1	0	0	0	10765	1203	42	3	683	3	NSDHL	23	152034484	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	99288	152034484	3236076	522	161180											
PLXNA3	55558	broad.mit.edu	37	chrX	153695419	153695419	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagcactgccatcactGtgagtgggacccacctgctg	13	12	1	1			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153695419	C	C	153695419	3	2	205	1	0	0	0	0	1	0	0	0	12216	1377	48	4	3193	4	PLXNA3	23	153695419	Missense_Mutation	SNP	G	TCGA-73-4662-01A-01D-1265-08	1660935	153695419	1575141	523	161181											
F8	2157	broad.mit.edu	37	chrX	154221303	154221303	+	Frame_Shift_Del	DEL	G	-	-													atgagtaggtaaggcacagtGggtcagaggccattggacca							TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154221303	-	-	154221303	7	5	205	1	0	1	0	1	0	0	0	0	5393	1348	47	0	6666	0	F8	23	154221303	Frame_Shift_Del	DEL	G	TCGA-73-4662-01A-01D-1265-08	525884	154221303	1049257	524	161182											
F8	2157	broad.mit.edu	37	chrX	154225290	154225290	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaccaacagcatgaagacTgacaggatgggaagccatgt	11	9	0	3			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154225290	G	G	154225290	3	3	205	1	0	0	0	0	1	0	0	0	5393	1580	55	5	6833	5	F8	23	154225290	Missense_Mutation	SNP	T	TCGA-73-4662-01A-01D-1265-08	3987	154225290	1045270	525	161183											
MXRA8	54587	broad.mit.edu	37	chr1	1289872	1289872	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacattgatgacgttgtggcCgcgcgccagtgtggggtctg	17	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1289872	T	T	1289872	3	4	206	1	0	0	0	0	1	0	0	0	10099	652	23	4	381	4	MXRA8	1	1289872	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08		1289872	247960749	1	161184											
KIAA1751	85452	broad.mit.edu	37	chr1	1895392	1895392	+	Intron	DEL	G	-	-													agctttgcctcaaggtaaccGctggtgagcatttgccaact							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1895392	-	-	1895392	6	5	206	0	1	1	0	1	0	0	0	0	8326	1102	38	0		0	KIAA1751	1	1895392	Intron	DEL	G	TCGA-73-4666-01A-01D-1265-08	605520	1895392	247355229	2	161185											
NPHP4	261734	broad.mit.edu	37	chr1	5964716	5964716	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgctcacaggcacgaggaTgtgggtcagggcgccagagc	16	11	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5964716	C	C	5964716	3	2	206	1	0	0	0	0	1	0	0	0	10676	1464	51	5	2236	5	NPHP4	1	5964716	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	4069324	5964716	243285905	3	161186											
CAMTA1	23261	broad.mit.edu	37	chr1	7792506	7792506	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctcctgctctgccctAgataaccagttcaggatgtc	7	14	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7792506	G	G	7792506	5	3	206	1	0	0	0	0	0	0	1	0	2639	434	15	5	2959	5	CAMTA1	1	7792506	Splice_Site	SNP	A	TCGA-73-4666-01A-01D-1265-08	1827790	7792506	241458115	4	161187											
PER3	8863	broad.mit.edu	37	chr1	7890002	7890002	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccatcctactgccagcgctCtgtccacaggatcgcctccc	7	20	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7890002	T	T	7890002	2	4	206	1	0	0	0	0	0	0	0	1	11825	912	32	4		4	PER3	1	7890002	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	97496	7890002	241360619	5	161188											
PLOD1	5351	broad.mit.edu	37	chr1	12009871	12009871	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaatgtggagaaggggacGtcggcaggtggagggcagaa	21	4	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12009871	T	T	12009871	2	4	206	1	0	0	0	0	0	0	0	1	12196	1132	40	3		3	PLOD1	1	12009871	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	4119869	12009871	237240750	6	161189											
PDPN	10630	broad.mit.edu	37	chr1	13940702	13940702	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcaatatttgctatgtgcAgtagggcagtggctttgttt	13	5	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13940702	T	T	13940702	1	4	206	0	1	0	0	0	0	0	0	0	11782	203	7	5		5	PDPN	1	13940702	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	1930831	13940702	235309919	7	161190											
PADI6	353238	broad.mit.edu	37	chr1	17715219	17715219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggaaccctggggtaagagGggagcgagtaaatgtggaag	18	6	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17715219	A	A	17715219	1	1	206	0	1	0	0	0	0	0	0	0	11475	1247	43	4		4	PADI6	1	17715219	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3774517	17715219	231535402	8	161191											
IGSF21	84966	broad.mit.edu	37	chr1	18702611	18702611	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctagagagcatctgatTcattgcatgggcttagggaa	13	7	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18702611	G	G	18702611	1	3	206	0	1	0	0	0	0	0	0	0	7669	1798	62	5		5	IGSF21	1	18702611	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	987392	18702611	230548010	9	161192											
TCEA3	6920	broad.mit.edu	37	chr1	23751185	23751185	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagtagggcctcggggGcaggaggcgcgaaggcggag	22	9	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23751185	A	A	23751185	1	1	206	0	1	0	0	0	0	0	0	0	15791	1218	42	4		4	TCEA3	1	23751185	5'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	5048574	23751185	225499436	10	161193											
CNR2	1269	broad.mit.edu	37	chr1	24227953	24227953	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgacctgctgcagcctcccCgggcacctcaggcatagaag	11	17	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24227953	A	A	24227953	1	1	206	0	1	0	0	0	0	0	0	0	3664	667	23	1		1	CNR2	1	24227953	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	476768	24227953	225022668	11	161194											
EXTL1	2134	broad.mit.edu	37	chr1	26356869	26356869	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgctctgttgctcagGctggagtgcagtggcacgaa	14	9	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26356869	A	A	26356869	1	1	206	0	1	0	0	0	0	0	0	0	5368	1218	42	4		4	EXTL1	1	26356869	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2128916	26356869	222893752	12	161195											
CNKSR1	10256	broad.mit.edu	37	chr1	26515944	26515944	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttgacctctgactccacaGaacagtccccccactccctg	5	19	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26515944	T	T	26515944	4	4	206	1	0	0	0	0	0	1	0	0	3638	943	33	3	2129	3	CNKSR1	1	26515944	Nonsense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	159075	26515944	222734677	13	161196											
PUM1	9698	broad.mit.edu	37	chr1	31478858	31478858	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcttctctgcaccatgaTtggctgggaaactgaatgat	11	8	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31478858	C	C	31478858	3	2	206	1	0	0	0	0	1	0	0	0	12933	1493	52	5	3076	5	PUM1	1	31478858	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	4962914	31478858	217771763	14	161197											
HDAC1	3065	broad.mit.edu	37	chr1	32796425	32796425	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcctatgctgatgctgGgaggcggtggttacaccatt	13	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32796425	T	T	32796425	4	4	206	1	0	0	0	0	0	1	0	0	7071	1233	43	2	929	2	HDAC1	1	32796425	Nonsense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1317567	32796425	216454196	15	161198											
C1orf94	84970	broad.mit.edu	37	chr1	34684357	34684357	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgggaatggcataaacTtttagatctcctcttctccc	7	12	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34684357	G	G	34684357	3	3	206	1	0	0	0	0	1	0	0	0	2093	1609	56	5	1818	5	C1orf94	1	34684357	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1887932	34684357	214566264	16	161199											
PPIE	10450	broad.mit.edu	37	chr1	40206923	40206923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcctaaatagtgattGgatagaacttctggtgtttg	9	6	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40206923	T	T	40206923	1	4	206	0	1	0	0	0	0	0	0	0	12423	1363	47	2		2	PPIE	1	40206923	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	5522566	40206923	209043698	17	161200											
PPIE	10450	broad.mit.edu	37	chr1	40209669	40209669	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttttttttttaagttttaAtggaaatttgccaatatgta	5	3	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40209669	G	G	40209669	1	3	206	0	1	0	0	0	0	0	0	0	12423	116	4	5		5	PPIE	1	40209669	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	2746	40209669	209040952	18	161201											
KIF2C	11004	broad.mit.edu	37	chr1	45205397	45205397	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggcggtgccaagcgtaggAagatggttgggaactgcgtc	18	7	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45205397	G	G	45205397	1	3	206	0	1	0	0	0	0	0	0	0	8369	261	9	5		5	KIF2C	1	45205397	5'Flank	SNP	A	TCGA-73-4666-01A-01D-1265-08	4995728	45205397	204045224	19	161202											
DAB1	1600	broad.mit.edu	37	chr1	58993032	58993032	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaagaaatgacagaaaagctCcattaagacaatttatttca	6	6	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58993032	G	G	58993032	1	3	206	0	1	0	0	0	0	0	0	0	4250	870	30	4		4	DAB1	1	58993032	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	13787635	58993032	190257589	20	161203											
CACHD1	57685	broad.mit.edu	37	chr1	65107424	65107424	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcgaggtggggaagtccAaggacatgaacaggaaactg	14	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65107424	G	G	65107424	1	3	206	0	1	0	0	0	0	0	0	0	2563	145	5	5		5	CACHD1	1	65107424	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	6114392	65107424	184143197	21	161204											
LEPR	3953	broad.mit.edu	37	chr1	65895901	65895901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaacagtagttcggccatgCcttcagagtgctttctttat	8	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65895901	T	T	65895901	1	4	206	0	1	0	0	0	0	0	0	0	8800	754	26	4		4	LEPR	1	65895901	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	788477	65895901	183354720	22	161205											
C1orf141	400757	broad.mit.edu	37	chr1	67558821	67558821	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cactggatgtgggtatgctcGttggttttcctgcagaaaac	12	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67558821	C	C	67558821	3	2	206	1	0	0	0	0	1	0	0	0	2021	1145	40	4	136	4	C1orf141	1	67558821	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1662920	67558821	181691800	23	161206											
IL12RB2	3595	broad.mit.edu	37	chr1	67852195	67852195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcccagagggcgcatacaCcaatcaggattttgaaatgt	11	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67852195	A	A	67852195	1	1	206	0	1	0	0	0	0	0	0	0	7697	522	18	3		3	IL12RB2	1	67852195	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	293374	67852195	181398426	24	161207											
NEGR1	257194	broad.mit.edu	37	chr1	72400950	72400950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcaaaaataatacttgacCggttcagccaggcacccttt	7	13	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72400950	A	A	72400950	3	1	206	1	0	0	0	0	1	0	0	0	10412	652	23	1	867	1	NEGR1	1	72400950	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4548755	72400950	176849671	25	161208											
RABGGTB	5876	broad.mit.edu	37	chr1	76251902	76251902	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcgcatctgcgcaggcgcCcggctcctaagtctacccag	12	16	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76251902	G	G	76251902	1	3	206	0	1	0	0	0	0	0	0	0	13076	638	22	4		4	RABGGTB	1	76251902	5'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	3850952	76251902	172998719	26	161209											
PTGFR	5737	broad.mit.edu	37	chr1	78959226	78959227	+	Splice_Site	DNP	GG	TT	TT													atttgttggagcccatttctGgtaagagcctgaagttttga							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	78959227	TT	TT	78959226	5	4	206	1	0	0	0	0	0	0	1	0	12855	1362	47	2	800	2	PTGFR	1	78959226	Splice_Site	DNP	GG	TCGA-73-4666-01A-01D-1265-08	2707324	78959226	170291395	27	161210											
ZNF644	84146	broad.mit.edu	37	chr1	91382454	91382454	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccaccatgccagctccagtCcgtggaagattagcgtttac	9	13	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91382454	A	A	91382454	2	1	206	1	0	0	0	0	0	0	0	1	18187	842	30	3		3	ZNF644	1	91382454	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	12423228	91382454	157868167	28	161211											
LPPR5	163404	broad.mit.edu	37	chr1	99418635	99418635	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttacttacggtcagataCatagctgcatagacactgag	8	10	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99418635	T	T	99418635	3	4	206	1	0	0	0	0	1	0	0	0	9015	478	17	4	369	4	LPPR5	1	99418635	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	8036181	99418635	149831986	29	161212											
PALMD	54873	broad.mit.edu	37	chr1	100154432	100154432	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgactttaaaggtacaGgaataaaagtttatgatgat	9	3	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100154432	A	A	100154432	3	1	206	1	0	0	0	0	1	0	0	0	11505	1001	35	4	642	4	PALMD	1	100154432	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	735797	100154432	149096189	30	161213											
CCDC76	54482	broad.mit.edu	37	chr1	100598771	100598771	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcgcctggttttccagctgAgggtagatgcggttactatg	14	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100598771	T	T	100598771	3	4	206	1	0	0	0	0	1	0	0	0	2878	304	11	5	49	5	CCDC76	1	100598771	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	444339	100598771	148651850	31	161214											
OLFM3	118427	broad.mit.edu	37	chr1	102269934	102269934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagtattggttatggaaggGaatgtctgtgtactcatatg	12	3	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102269934	T	T	102269934	3	4	206	1	0	0	0	0	1	0	0	0	10949	1174	41	3	143	3	OLFM3	1	102269934	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1671163	102269934	146980687	32	161215											
COL11A1	1301	broad.mit.edu	37	chr1	103462789	103462789	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaagatcttactctttaagTttcaaaaacattgaacactt	3	8	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103462789	C	C	103462789	1	2	206	0	1	0	0	0	0	0	0	0	3699	1740	60	5		5	COL11A1	1	103462789	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	1192855	103462789	145787832	33	161216											
COL11A1	1301	broad.mit.edu	37	chr1	103544276	103544276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggcaggttttccagtGtggtcttcaaacagaaaaac	11	8	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103544276	T	T	103544276	3	4	206	1	0	0	0	0	1	0	0	0	3699	1368	48	3	5411	3	COL11A1	1	103544276	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	81487	103544276	145706345	34	161217											
FNDC7	163479	broad.mit.edu	37	chr1	109276257	109276257	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgaagggcacagagggTataaaatttctttctttttt	9	4	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109276257	C	C	109276257	1	2	206	0	1	0	0	0	0	0	0	0	6031	1653	57	5		5	FNDC7	1	109276257	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	5731981	109276257	139974364	35	161218											
CELSR2	1952	broad.mit.edu	37	chr1	109810586	109810586	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctacttcggcagcgacgtCaaggtggcctaccagctggc	14	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109810586	T	T	109810586	2	4	206	1	0	0	0	0	0	0	0	1	3252	813	29	4		4	CELSR2	1	109810586	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	534329	109810586	139440035	36	161219											
KCNA10	3744	broad.mit.edu	37	chr1	111060137	111060137	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtcgggcacatgtcccCatagcctacagttgtcatgg	13	11	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111060137	T	T	111060137	3	4	206	1	0	0	0	0	1	0	0	0	8072	594	21	4	266	4	KCNA10	1	111060137	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1249551	111060137	138190484	37	161220											
DENND2C	163259	broad.mit.edu	37	chr1	115138582	115138582	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttttaaacaaaatttactCaaagtttcagcccatttaaa	3	7	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115138582	A	A	115138582	1	1	206	0	1	0	0	0	0	0	0	0	4470	841	29	3		3	DENND2C	1	115138582	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	4078445	115138582	134112039	38	161221											
ATP1A1	476	broad.mit.edu	37	chr1	116926831	116926831	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcctcactgtattcttcaaaGaactgctatatattaaaaga	5	8	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116926831	C	C	116926831	1	2	206	0	1	0	0	0	0	0	0	0	1132	957	33	4		4	ATP1A1	1	116926831	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1788249	116926831	132323790	39	161222											
NBPF9	400818	broad.mit.edu	37	chr1	144816348	144816348	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacctgttccctcttaatggGaacctccattttgctttctg	6	12	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144816348	T	T	144816348	1	4	206	0	1	0	0	0	0	0	0	0	10294	1189	41	3		3	NBPF9	1	144816348	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	27889517	144816348	104434273	40	161223											
NBPF10	100132406	broad.mit.edu	37	chr1	145584925	145584925	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctctcttatgatctctgGggatgtaaatctgctttccc	7	12	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145584925	T	T	145584925	1	4	206	0	1	0	0	0	0	0	0	0	10287	1247	43	2		2	NBPF10	1	145584925	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	768577	145584925	103665696	41	161224											
CHD1L	9557	broad.mit.edu	37	chr1	146751897	146751897	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagagcagagcaaatggcaCaaccaccccaagctagagct	9	12	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146751897	T	T	146751897	1	4	206	0	1	0	0	0	0	0	0	0	3355	493	17	4		4	CHD1L	1	146751897	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1166972	146751897	102498724	42	161225											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858837	149858837	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaaagtcaccatcgccCagggcggcgttttgcctaac	12	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149858837	G	G	149858837	3	3	206	1	0	0	0	0	1	0	0	0	7245	595	21	4	315	4	HIST2H2AC	1	149858837	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3106940	149858837	99391784	43	161226											
SETDB1	9869	broad.mit.edu	37	chr1	150935079	150935079	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttagagttactgaaagctctCgaaattacggttacaatcct	7	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150935079	G	G	150935079	3	3	206	1	0	0	0	0	1	0	0	0	14251	876	31	4	3241	4	SETDB1	1	150935079	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1076242	150935079	98315542	44	161227											
SCNM1	79005	broad.mit.edu	37	chr1	151139642	151139642	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagccgggaaaggaaagaaAgcagaatccaaaacatcaga	11	8	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151139642	G	G	151139642	3	3	206	1	0	0	0	0	1	0	0	0	14039	72	3	5	271	5	SCNM1	1	151139642	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	204563	151139642	98110979	45	161228											
HRNR	388697	broad.mit.edu	37	chr1	152187689	152187689	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccctagatgactgtcctgatCtagagccgtgttgtccgtag	11	11	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152187689	A	A	152187689	3	1	206	1	0	0	0	0	1	0	0	0	7426	913	32	3	2140	3	HRNR	1	152187689	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1048047	152187689	97062932	46	161229											
LCE1A	353131	broad.mit.edu	37	chr1	152799929	152799929	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtttgactctccttcagctCctgaacacccaccgccgaga	7	16	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152799929	A	A	152799929	1	1	206	0	1	0	0	0	0	0	0	0	8731	870	30	3		3	LCE1A	1	152799929	5'Flank	SNP	C	TCGA-73-4666-01A-01D-1265-08	612240	152799929	96450692	47	161230											
ATP8B2	57198	broad.mit.edu	37	chr1	154319197	154319197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgccatgcacagcaatggGctcttcgacatgtttcccaa	8	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154319197	T	T	154319197	2	4	206	1	0	0	0	0	0	0	0	1	1199	1190	42	3		3	ATP8B2	1	154319197	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	1519268	154319197	94931424	48	161231											
ADAR	103	broad.mit.edu	37	chr1	154561176	154561177	+	Intron	DNP	GG	AA	AA													aaagaaagtctggttaggaaGgcaggttcaattctgggaaa							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	154561177	AA	AA	154561176	1	1	206	0	1	0	0	0	0	0	0	0	281	1015	35	4		4	ADAR	1	154561176	Intron	DNP	GG	TCGA-73-4666-01A-01D-1265-08	241979	154561176	94689445	49	161232											
PBXIP1	57326	broad.mit.edu	37	chr1	154918707	154918707	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagccttccggtctctctgCccatcccaccacttttcctt	4	19	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154918707	T	T	154918707	2	4	206	1	0	0	0	0	0	0	0	1	11590	726	26	4		4	PBXIP1	1	154918707	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	357531	154918707	94331914	50	161233											
SHC1	6464	broad.mit.edu	37	chr1	154937911	154937911	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagaggcccatagacagcTgcccagcgggaatgtctaca	12	11	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154937911	C	C	154937911	1	2	206	0	1	0	0	0	0	0	0	0	14383	1595	55	5		5	SHC1	1	154937911	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	19204	154937911	94312710	51	161234											
ZBTB7B	51043	broad.mit.edu	37	chr1	154988888	154988888	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaccacctgcagcgccacctCaaaggccagaactgcctgga	10	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154988888	G	G	154988888	2	3	206	1	0	0	0	0	0	0	0	1	17680	813	29	4		4	ZBTB7B	1	154988888	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	50977	154988888	94261733	52	161235											
RIT1	6016	broad.mit.edu	37	chr1	155874530	155874530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatttaatacctgtccagCtgtatccaaaatgtccagat	8	9	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155874530	A	A	155874530	3	1	206	1	0	0	0	0	1	0	0	0	13497	797	28	3	442	3	RIT1	1	155874530	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	885642	155874530	93376091	53	161236											
ARHGEF11	9826	broad.mit.edu	37	chr1	156910211	156910211	+	Missense_Mutation	SNP	C	A	A													cttggaccctctgctgggacCcagtgcctgtttcggatgag							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156910211	A	A	156910211	3	1	206	1	0	0	0	0	1	0	0	0	898	623	22	2	1191	2	ARHGEF11	1	156910211	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1035681	156910211	92340410	54	161237	682	2									
ARHGEF11	9826	broad.mit.edu	37	chr1	156910213	156910213	+	Silent	SNP	A	C	C													tggaccctctgctgggacccAgtgcctgtttcggatgagag							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156910213	C	C	156910213	2	2	206	1	0	0	0	0	0	0	0	1	898	175	7	5		5	ARHGEF11	1	156910213	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	2	156910213	92340408	55	161238	682	2									
OR10T2	128360	broad.mit.edu	37	chr1	158368639	158368639	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaggcaccataattacCaggatgctgaggctaaataa	9	7	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158368639	A	A	158368639	2	1	206	1	0	0	0	0	0	0	0	1	11013	581	21	2		2	OR10T2	1	158368639	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1458426	158368639	90881982	56	161239											
SPTA1	6708	broad.mit.edu	37	chr1	158647689	158647689	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacagggcaaacggtccaaCagaactcacagcaaggacca	9	12	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158647689	A	A	158647689	1	1	206	0	1	0	0	0	0	0	0	0	15234	493	17	3		3	SPTA1	1	158647689	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	279050	158647689	90602932	57	161240											
CADM3	57863	broad.mit.edu	37	chr1	159162528	159162528	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcactgtgctaggtgagacTcccaaaccccagtgtctcta	9	13	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159162528	A	A	159162528	1	1	206	0	1	0	0	0	0	0	0	0	2594	1566	54	5		5	CADM3	1	159162528	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	514839	159162528	90088093	58	161241											
DARC	2532	broad.mit.edu	37	chr1	159175317	159175317	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagatgtatggaattcttccTatggtgtgaatgattccttc	9	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159175317	A	A	159175317	3	1	206	1	0	0	0	0	1	0	0	0	4273	1522	53	5	121	5	DARC	1	159175317	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	12789	159175317	90075304	59	161242											
OR10J1	26476	broad.mit.edu	37	chr1	159410315	159410315	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctgtgcatcccacctcaCtgtggtcattgtccactaca	6	16	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159410315	T	T	159410315	3	4	206	1	0	0	0	0	1	0	0	0	11004	565	20	4	769	4	OR10J1	1	159410315	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	234998	159410315	89840306	60	161243											
FCRL6	343413	broad.mit.edu	37	chr1	159776121	159776121	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtccagcacaaacgttgagTagtcaagtggccgggtggtt	14	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159776121	C	C	159776121	1	2	206	0	1	0	0	0	0	0	0	0	5856	1653	57	5		5	FCRL6	1	159776121	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	365806	159776121	89474500	61	161244											
CCDC19	25790	broad.mit.edu	37	chr1	159842720	159842720	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggatttgggaaaggaggAgattccagcgcacctcagct	14	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159842720	T	T	159842720	1	4	206	0	1	0	0	0	0	0	0	0	2822	319	11	5		5	CCDC19	1	159842720	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	66599	159842720	89407901	62	161245											
F11R	50848	broad.mit.edu	37	chr1	160970254	160970254	+	Intron	DEL	C	-	-													agcctcctactctcaccatgCccctggctgccacctaacca							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	160970254	-	-	160970254	6	5	206	0	1	1	0	1	0	0	0	0	5381	754	26	0		0	F11R	1	160970254	Intron	DEL	C	TCGA-73-4666-01A-01D-1265-08	1127534	160970254	88280367	63	161246											
RGS4	5999	broad.mit.edu	37	chr1	163042551	163042551	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttcttgccccaattttttTaccatggcattccaattatt	3	10	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163042551	A	A	163042551	1	1	206	0	1	0	0	0	0	0	0	0	13416	1769	61	5		5	RGS4	1	163042551	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2072297	163042551	86208070	64	161247											
NUF2	83540	broad.mit.edu	37	chr1	163297242	163297242	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgacatagctttagagttAtgcatcggagtattcaaagt	10	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163297242	G	G	163297242	1	3	206	0	1	0	0	0	0	0	0	0	10842	464	16	5		5	NUF2	1	163297242	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	254691	163297242	85953379	65	161248											
RABGAP1L	9910	broad.mit.edu	37	chr1	174210776	174210776	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atttcagatacatgttttctCctgtgaaattaaagaggcag	8	6	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174210776	G	G	174210776	3	3	206	1	0	0	0	0	1	0	0	0	13073	855	30	4	712	4	RABGAP1L	1	174210776	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	10913534	174210776	75039845	66	161249											
TNR	7143	broad.mit.edu	37	chr1	175335155	175335155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacttctgaggcaatccCagaggatggggtaaaggtaa	15	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175335155	A	A	175335155	3	1	206	1	0	0	0	0	1	0	0	0	16461	594	21	2	1955	2	TNR	1	175335155	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1124379	175335155	73915466	67	161250											
RFWD2	64326	broad.mit.edu	37	chr1	175957481	175957481	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagtttttttcattgatatGacccttgaaggaacgtaggc	9	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175957481	A	A	175957481	3	1	206	1	0	0	0	0	1	0	0	0	13368	1290	45	4	296	4	RFWD2	1	175957481	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	622326	175957481	73293140	68	161251											
PAPPA2	60676	broad.mit.edu	37	chr1	176709310	176709310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcatctcagaggacgagGggcagaatcatcagggacag	14	9	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176709310	T	T	176709310	3	4	206	1	0	0	0	0	1	0	0	0	11527	1232	43	2	4232	2	PAPPA2	1	176709310	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	751829	176709310	72541311	69	161252											
ASTN1	460	broad.mit.edu	37	chr1	176857281	176857281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcacatcgacaccagtcCtcgatgacatctccagtccc	7	16	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176857281	A	A	176857281	3	1	206	1	0	0	0	0	1	0	0	0	1068	680	24	2	912	2	ASTN1	1	176857281	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	147971	176857281	72393340	70	161253											
CACNA1E	777	broad.mit.edu	37	chr1	181701768	181701768	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagttcgaggaggagcGcatcagccgtggggggtccc	19	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181701768	C	C	181701768	3	2	206	1	0	0	0	0	1	0	0	0	2568	1087	38	4	2624	4	CACNA1E	1	181701768	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	4844487	181701768	67548853	71	161254											
CACNA1E	777	broad.mit.edu	37	chr1	181706767	181706768	+	Missense_Mutation	DNP	CT	AA	AA													tggcggcagaggaccccgtcCtgaccaactcggagcgcaac							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	181706768	AA	AA	181706767	3	1	206	1	0	0	0	0	1	0	0	0	2568	680	24	2	3619	2	CACNA1E	1	181706767	Missense_Mutation	DNP	CT	TCGA-73-4666-01A-01D-1265-08	4999	181706767	67543854	72	161255											
CACNA1E	777	broad.mit.edu	37	chr1	181765861	181765861	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcggggacgatcaaaagagcGaaagcatcttctctctcctg	11	11	4	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181765861	A	A	181765861	3	1	206	1	0	0	0	0	1	0	0	0	2568	1058	37	4	6319	4	CACNA1E	1	181765861	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	59094	181765861	67484760	73	161256											
RGL1	23179	broad.mit.edu	37	chr1	183876181	183876181	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagattgaagcagctgctgAcgccagcaccacctcgccca	10	15	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183876181	T	T	183876181	3	4	206	1	0	0	0	0	1	0	0	0	13384	275	10	5	1667	5	RGL1	1	183876181	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	2110320	183876181	65374440	74	161257											
EDEM3	80267	broad.mit.edu	37	chr1	184663205	184663205	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtttagcaagtcatagctCatccttctccatcatttcaa	4	11	5	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184663205	A	A	184663205	4	1	206	1	0	0	0	0	0	1	0	0	4953	835	29	3	11	3	EDEM3	1	184663205	Nonsense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	787024	184663205	64587416	75	161258											
RNF2	6045	broad.mit.edu	37	chr1	185056803	185056803	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgactgccaaggggcatAtgagacgtgtaaactgggat	14	6	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185056803	T	T	185056803	1	4	206	0	1	0	0	0	0	0	0	0	13583	464	16	5		5	RNF2	1	185056803	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	393598	185056803	64193818	76	161259											
TPR	7175	broad.mit.edu	37	chr1	186287787	186287787	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaactttgtggtttatcaCatttttagccagaagatact	6	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186287787	T	T	186287787	1	4	206	0	1	0	0	0	0	0	0	0	16540	493	17	4		4	TPR	1	186287787	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1230984	186287787	62962834	77	161260											
FAM5C	339479	broad.mit.edu	37	chr1	190067649	190067649	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcaggggtaggtccaaCttagtccgctcccagtctgg	12	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067649	A	A	190067649	3	1	206	1	0	0	0	0	1	0	0	0	5645	564	20	3	504	3	FAM5C	1	190067649	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3779862	190067649	59182972	78	161261											
FAM5C	339479	broad.mit.edu	37	chr1	190234233	190234233	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattttccacttaaaatcttTttttttaacttatctgcagg	3	7	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	190234233	G	G	190234233	1	3	206	0	1	0	0	0	0	0	0	0	5645	1856	64	5		5	FAM5C	1	190234233	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	166584	190234233	59016388	79	161262											
KCNT2	343450	broad.mit.edu	37	chr1	196296187	196296187	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatttctgcaacctgcaGtaagaaataaaagtgtgcat	8	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196296187	T	T	196296187	1	4	206	0	1	0	0	0	0	0	0	0	8162	1044	36	3		3	KCNT2	1	196296187	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	6061954	196296187	52954434	80	161263											
PKP1	5317	broad.mit.edu	37	chr1	201293685	201293685	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagcaacatgtcccgcCaccctctgctgcacagagtg	9	16	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201293685	G	G	201293685	3	3	206	1	0	0	0	0	1	0	0	0	12079	594	21	4	1915	4	PKP1	1	201293685	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4997498	201293685	47956936	81	161264											
LAD1	3898	broad.mit.edu	37	chr1	201353730	201353730	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gatccttccccatccttgttCcatcttatcccgcctgagtt	5	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201353730	G	G	201353730	1	3	206	0	1	0	0	0	0	0	0	0	8671	870	30	4		4	LAD1	1	201353730	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	60045	201353730	47896891	82	161265											
LMOD1	25802	broad.mit.edu	37	chr1	201868511	201868511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttctccatgataagggGtggagccaagggagggggag	19	6	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201868511	T	T	201868511	3	4	206	1	0	0	0	0	1	0	0	0	8930	1261	44	3	180	3	LMOD1	1	201868511	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	514781	201868511	47382110	83	161266											
ATP2B4	493	broad.mit.edu	37	chr1	203626576	203626576	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcatattggaaagtacttTggctcgagattgtccctctc	8	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203626576	C	C	203626576	1	2	206	0	1	0	0	0	0	0	0	0	1146	1827	63	5		5	ATP2B4	1	203626576	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	1758065	203626576	45624045	84	161267											
PLEKHA6	22874	broad.mit.edu	37	chr1	204214839	204214839	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctccttttggatttgccGgttcagcacctcattctgaa	8	11	4	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204214839	T	T	204214839	2	4	206	1	0	0	0	0	0	0	0	1	12155	1115	39	1		1	PLEKHA6	1	204214839	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	588263	204214839	45035782	85	161268											
IKBKE	9641	broad.mit.edu	37	chr1	206666678	206666678	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgcctcccatagctccttAccccagccctacacgaaagg	7	19	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	206666678	C	C	206666678	3	2	206	1	0	0	0	0	1	0	0	0	7682	391	14	5	2082	5	IKBKE	1	206666678	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	2451839	206666678	42583943	86	161269											
KCNH1	3756	broad.mit.edu	37	chr1	211033609	211033609	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatacaaggggtagtagctGccacatctgtggagacactt	11	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211033609	T	T	211033609	1	4	206	0	1	0	0	0	0	0	0	0	8101	1334	46	3		3	KCNH1	1	211033609	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	4366931	211033609	38217012	87	161270											
PROX1	5629	broad.mit.edu	37	chr1	214185131	214185131	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttattttctttagaaatgtAcccaaatctgtttttgtgtt	5	5	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214185131	T	T	214185131	1	4	206	0	1	0	0	0	0	0	0	0	12666	406	14	5		5	PROX1	1	214185131	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	3151522	214185131	35065490	88	161271											
KCNK2	3776	broad.mit.edu	37	chr1	215179452	215179452	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttccaacagagggttagtTgctggaattttttccatgac	11	7	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215179452	A	A	215179452	1	1	206	0	1	0	0	0	0	0	0	0	8136	1827	63	5		5	KCNK2	1	215179452	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	994321	215179452	34071169	89	161272											
TSNAX	7257	broad.mit.edu	37	chr1	231672975	231672975	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagcatttcagcaggaactTgatgcaaggcatgacaaata	9	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231672975	G	G	231672975	2	3	206	1	0	0	0	0	0	0	0	1	16756	1799	63	5		5	TSNAX	1	231672975	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	16493523	231672975	17577646	90	161273											
SIPA1L2	57568	broad.mit.edu	37	chr1	232629521	232629521	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataccacatagctcatacaCagtgatttccttgtatctgt	5	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232629521	A	A	232629521	1	1	206	0	1	0	0	0	0	0	0	0	14443	493	17	3		3	SIPA1L2	1	232629521	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	956546	232629521	16621100	91	161274											
TARBP1	6894	broad.mit.edu	37	chr1	234599596	234599596	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatactctttatttcttcTggaagaagagaaatataagt	6	6	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234599596	C	C	234599596	2	2	206	1	0	0	0	0	0	0	0	1	15674	1567	55	5		5	TARBP1	1	234599596	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	1970075	234599596	14651025	92	161275											
MTR	4548	broad.mit.edu	37	chr1	236988602	236988602	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacagtgtatatttttaagGcaatttgcaataatggttga	8	3	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236988602	A	A	236988602	1	1	206	0	1	0	0	0	0	0	0	0	10052	1218	42	4		4	MTR	1	236988602	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2389006	236988602	12262019	93	161276											
RYR2	6262	broad.mit.edu	37	chr1	237580479	237580479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtaccaaatagctcagcGttgtgcttctgtgtcagcct	10	10	3	0	rs142393787	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237580479	T	T	237580479	1	4	206	0	1	0	0	0	0	0	0	0	13880	1160	40	3		3	RYR2	1	237580479	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	591877	237580479	11670142	94	161277											
RYR2	6262	broad.mit.edu	37	chr1	237813270	237813270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatgtgctcctctctttGctggcacagagcaccacgct	9	14	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237813270	T	T	237813270	3	4	206	1	0	0	0	0	1	0	0	0	13880	1319	46	3	7804	3	RYR2	1	237813270	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	232791	237813270	11437351	95	161278											
FMN2	56776	broad.mit.edu	37	chr1	240458368	240458368	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacaaatgtgtggtctcaTggtttgaaaaattgtgaatc	9	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240458368	C	C	240458368	1	2	206	0	1	0	0	0	0	0	0	0	6008	1479	51	5		5	FMN2	1	240458368	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2645098	240458368	8792253	96	161279											
RGS7	6000	broad.mit.edu	37	chr1	240986223	240986223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggatagtaataaacacCgaaatactagaaaacagtga	9	6	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240986223	A	A	240986223	1	1	206	0	1	0	0	0	0	0	0	0	13419	667	23	1		1	RGS7	1	240986223	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	527855	240986223	8264398	97	161280											
CNST	163882	broad.mit.edu	37	chr1	246829232	246829232	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attccagacacagacatgctGgcagtgagagtgaaaggcgg	14	8	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246829232	T	T	246829232	1	4	206	0	1	0	0	0	0	0	0	0	3666	1363	47	2		2	CNST	1	246829232	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	5843009	246829232	2421389	98	161281											
OR2G2	81470	broad.mit.edu	37	chr1	247752058	247752058	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtggctgtctgccgtcctCtccattacactgtcttaatg	8	12	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247752058	A	A	247752058	3	1	206	1	0	0	0	0	1	0	0	0	11092	913	32	3	399	3	OR2G2	1	247752058	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	922826	247752058	1498563	99	161282											
OR2W3	343171	broad.mit.edu	37	chr1	248059635	248059635	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccatctcactgtggtctcCcttttctatggaaacatcat	5	13	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248059635	A	A	248059635	2	1	206	1	0	0	0	0	0	0	0	1	11127	610	22	2		2	OR2W3	1	248059635	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	307577	248059635	1190986	100	161283											
OR2L13	284521	broad.mit.edu	37	chr1	248100033	248100033	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctggatgttattctccttCgggaactcaagggttttcct	11	9	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248100033	A	A	248100033	1	1	206	0	1	0	0	0	0	0	0	0	11100	899	31	3		3	OR2L13	1	248100033	5'Flank	SNP	C	TCGA-73-4666-01A-01D-1265-08	40398	248100033	1150588	101	161284											
OR2L13	284521	broad.mit.edu	37	chr1	248186038	248186038	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctatctatgtccaagatcCctgcgatctctgacagagga	8	12	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248186038	A	A	248186038	1	1	206	0	1	0	0	0	0	0	0	0	11100	638	22	2		2	OR2L13	1	248186038	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	86005	248186038	1064583	102	161285											
OR2M4	26245	broad.mit.edu	37	chr1	248402987	248402987	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggtcggactctactacGgtgctgctatgttcatgtac	11	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248402987	C	C	248402987	3	2	206	1	0	0	0	0	1	0	0	0	11106	1116	39	4	759	4	OR2M4	1	248402987	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	216949	248402987	847634	103	161286											
MYT1L	23040	broad.mit.edu	37	chr2	1914199	1914199	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcccttagcaccaagacCctgatgcaggtggagctggt	11	13	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1914199	A	A	1914199	1	1	206	0	1	0	0	0	0	0	0	0	10201	638	22	2		2	MYT1L	2	1914199	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08		1914199	241285174	104	161287											
MYT1L	23040	broad.mit.edu	37	chr2	1926808	1926808	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaactcaactcacttttccGacccaggttttcgtttttgt	5	11	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1926808	T	T	1926808	2	4	206	1	0	0	0	0	0	0	0	1	10201	1057	37	3		3	MYT1L	2	1926808	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	12609	1926808	241272565	105	161288											
KIDINS220	57498	broad.mit.edu	37	chr2	8919174	8919174	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttatatttgaatcccgaagCacactattgaggttctggtt	8	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8919174	G	G	8919174	2	3	206	1	0	0	0	0	0	0	0	1	8341	697	25	4		4	KIDINS220	2	8919174	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	6992366	8919174	234280199	106	161289											
NBAS	51594	broad.mit.edu	37	chr2	15555760	15555760	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttttaatagctcattagcCacaccaggcgactgtttctc	6	12	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15555760	A	A	15555760	2	1	206	1	0	0	0	0	0	0	0	1	10280	581	21	2		2	NBAS	2	15555760	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	6636586	15555760	227643613	107	161290											
C2orf84	653140	broad.mit.edu	37	chr2	24413506	24413506	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggttccagaatgagccacCgccacagccctccctgtcag	9	17	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24413506	A	A	24413506	1	1	206	0	1	0	0	0	0	0	0	0	2221	667	23	1		1	C2orf84	2	24413506	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	8857746	24413506	218785867	108	161291											
OTOF	9381	broad.mit.edu	37	chr2	26739101	26739101	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctccctgcccagtgacctCgggggtggacggctgggtgg	18	12	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26739101	A	A	26739101	1	1	206	0	1	0	0	0	0	0	0	0	11397	899	31	3		3	OTOF	2	26739101	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2325595	26739101	216460272	109	161292											
DPYSL5	56896	broad.mit.edu	37	chr2	27147943	27147943	+	Intron	DEL	G	-	-													ctggtgggatcccagaagaaGgcacaagtggtcttgtaggc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27147943	-	-	27147943	6	5	206	0	1	1	0	1	0	0	0	0	4790	1015	35	0		0	DPYSL5	2	27147943	Intron	DEL	G	TCGA-73-4666-01A-01D-1265-08	408842	27147943	216051430	110	161293											
SLC5A6	8884	broad.mit.edu	37	chr2	27425804	27425804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagttaacacaagcaatgGggtaaagcaaggctccctgc	12	9	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27425804	T	T	27425804	1	4	206	0	1	0	0	0	0	0	0	0	14783	1247	43	2		2	SLC5A6	2	27425804	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	277861	27425804	215773569	111	161294											
CAPN13	92291	broad.mit.edu	37	chr2	30977208	30977208	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcttttccgcggatcacAggtttcctcccactcctgag	9	15	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30977208	T	T	30977208	3	4	206	1	0	0	0	0	1	0	0	0	2652	188	7	5	1176	5	CAPN13	2	30977208	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	3551404	30977208	212222165	112	161295											
SPAST	6683	broad.mit.edu	37	chr2	32289037	32289037	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctccgcccgagtcgccgcAtaagcggaacctgtactatt	9	16	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32289037	C	C	32289037	3	2	206	1	0	0	0	0	1	0	0	0	15113	217	8	5	139	5	SPAST	2	32289037	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1311829	32289037	210910336	113	161296											
RASGRP3	25780	broad.mit.edu	37	chr2	33740140	33740140	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacatcgctgacttgcatgAttatggagatggtctatctg	10	7	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33740140	G	G	33740140	1	3	206	0	1	0	0	0	0	0	0	0	13184	348	12	5		5	RASGRP3	2	33740140	5'UTR	SNP	A	TCGA-73-4666-01A-01D-1265-08	1451103	33740140	209459233	114	161297											
MAP4K3	8491	broad.mit.edu	37	chr2	39553132	39553132	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacaaatcattacacagcaTtttaatatttcacattttta	1	8	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39553132	A	A	39553132	1	1	206	0	1	0	0	0	0	0	0	0	9353	1508	52	5		5	MAP4K3	2	39553132	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	5812992	39553132	203646241	115	161298											
SLC8A1	6546	broad.mit.edu	37	chr2	40655792	40655792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacatgagtcacaggttcCtcaaaagtaaaaatgcctgc	7	11	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40655792	A	A	40655792	3	1	206	1	0	0	0	0	1	0	0	0	14820	680	24	2	1440	2	SLC8A1	2	40655792	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1102660	40655792	202543581	116	161299											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44014219	44014219	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacaaggtaacttctctactAataaagttttcaagaggaag	7	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44014219	T	T	44014219	1	4	206	0	1	0	0	0	0	0	0	0	4887	377	13	5		5	DYNC2LI1	2	44014219	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	3358427	44014219	199185154	117	161300											
SIX2	10736	broad.mit.edu	37	chr2	45235621	45235621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcctctccgggggaccggCagaagccctgcgaacccctc	13	17	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45235621	A	A	45235621	1	1	206	0	1	0	0	0	0	0	0	0	14460	725	25	3		3	SIX2	2	45235621	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1221402	45235621	197963752	118	161301											
PRKCE	5581	broad.mit.edu	37	chr2	46211804	46211804	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctggggactcttgcggcagGgtttgcagtgtaaaggtaag	16	6	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46211804	C	C	46211804	3	2	206	1	0	0	0	0	1	0	0	0	12617	1232	43	4	830	4	PRKCE	2	46211804	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	976183	46211804	196987569	119	161302											
TTC7A	57217	broad.mit.edu	37	chr2	47287847	47287847	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctgaggatgcagggaggGggtcaggatgcctctgactc	17	9	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47287847	A	A	47287847	1	1	206	0	1	0	0	0	0	0	0	0	16838	1247	43	4		4	TTC7A	2	47287847	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1076043	47287847	195911526	120	161303											
FSHR	2492	broad.mit.edu	37	chr2	49216144	49216144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcaaagctcagccccaCgaaagaatttctttcaattg	5	11	4	1	rs142383710	byFrequency	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49216144	A	A	49216144	3	1	206	1	0	0	0	0	1	0	0	0	6133	536	19	3	1611	3	FSHR	2	49216144	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1928297	49216144	193983229	121	161304											
CCDC85A	114800	broad.mit.edu	37	chr2	56420277	56420277	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgctgagtgggagcccGgaacacttccagaagcaccg	13	13	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56420277	T	T	56420277	2	4	206	1	0	0	0	0	0	0	0	1	2887	1103	39	1		1	CCDC85A	2	56420277	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	7204133	56420277	186779096	122	161305											
ZNF638	27332	broad.mit.edu	37	chr2	71632683	71632683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaactaagtaagtatttgtAtgagaaagagcttataccat	7	4	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71632683	G	G	71632683	1	3	206	0	1	0	0	0	0	0	0	0	18182	464	16	5		5	ZNF638	2	71632683	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	15212406	71632683	171566690	123	161306											
RTKN	6242	broad.mit.edu	37	chr2	74655631	74655631	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaccctgctgtccattcctCccctcgtctggccatacccc	5	22	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74655631	G	G	74655631	1	3	206	0	1	0	0	0	0	0	0	0	13833	870	30	4		4	RTKN	2	74655631	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3022948	74655631	168543742	124	161307											
REG1A	5967	broad.mit.edu	37	chr2	79349029	79349029	+	Intron	DEL	T	-	-													cggacattactctgctgtccTttttctgacccgtcctcttg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79349029	-	-	79349029	6	5	206	0	1	1	0	1	0	0	0	0	13318	1624	56	0		0	REG1A	2	79349029	Intron	DEL	T	TCGA-73-4666-01A-01D-1265-08	4693398	79349029	163850344	125	161308											
REG3A	5068	broad.mit.edu	37	chr2	79384504	79384504	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggttttagcctagaaGttaaagcctctccctcacct	6	14	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79384504	A	A	79384504	1	1	206	0	1	0	0	0	0	0	0	0	13320	1044	36	4		4	REG3A	2	79384504	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	35475	79384504	163814869	126	161309											
CTNNA2	1496	broad.mit.edu	37	chr2	80831226	80831226	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcccattgaaaaatacatcTgatgtcattaatgctgccaa	7	9	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80831226	A	A	80831226	2	1	206	1	0	0	0	0	0	0	0	1	4047	1567	55	5		5	CTNNA2	2	80831226	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	1446722	80831226	162368147	127	161310											
RMND5A	64795	broad.mit.edu	37	chr2	87376943	87376943	+	Intron	DEL	C	-	-													tttattctctcagtgttcttCgtttggctggatagggcgtg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	87376943	-	-	87376943	6	5	206	0	1	1	0	1	0	0	0	0	13508	899	31	0		0	RMND5A	2	87376943	Intron	DEL	C	TCGA-73-4666-01A-01D-1265-08	6545717	87376943	155822430	128	161311											
SNRNP200	23020	broad.mit.edu	37	chr2	96953686	96953686	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggacaatttcaaatatcgCtcgcatcaaccggccagccg	8	14	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96953686	T	T	96953686	3	4	206	1	0	0	0	0	1	0	0	0	14966	797	28	4	3214	4	SNRNP200	2	96953686	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	9576743	96953686	146245687	129	161312											
NCAPH	23397	broad.mit.edu	37	chr2	97007376	97007376	+	Intron	DEL	C	-	-													tcttgagcaagaattttgttCcagcactgccagccacaatg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97007376	-	-	97007376	6	5	206	0	1	1	0	1	0	0	0	0	10304	870	30	0		0	NCAPH	2	97007376	Intron	DEL	C	TCGA-73-4666-01A-01D-1265-08	53690	97007376	146191997	130	161313											
TMEM131	23505	broad.mit.edu	37	chr2	98382518	98382518	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctgaagagttccatgccCagagtggggtggattgtggg	16	9	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98382518	T	T	98382518	1	4	206	0	1	0	0	0	0	0	0	0	16167	609	21	4		4	TMEM131	2	98382518	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1375142	98382518	144816855	131	161314											
CREG2	200407	broad.mit.edu	37	chr2	101992212	101992212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaccgagccaccattctGgctccaaggctgtgtctctc	9	15	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101992212	T	T	101992212	1	4	206	0	1	0	0	0	0	0	0	0	3897	1363	47	2		2	CREG2	2	101992212	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3609694	101992212	141207161	132	161315											
SLC9A2	6549	broad.mit.edu	37	chr2	103274403	103274403	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatcctgtggctgtgcttGctgtctttgagaacattcac	10	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103274403	T	T	103274403	3	4	206	1	0	0	0	0	1	0	0	0	14826	1319	46	3	676	3	SLC9A2	2	103274403	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1282191	103274403	139924970	133	161316											
C2orf49	79074	broad.mit.edu	37	chr2	105959223	105959223	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaaatctttttgtttaCtgcttattttaacttgaatc	4	6	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105959223	T	T	105959223	1	4	206	0	1	0	0	0	0	0	0	0	2193	580	20	4		4	C2orf49	2	105959223	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2684820	105959223	137240150	134	161317											
BUB1	699	broad.mit.edu	37	chr2	111395742	111395742	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaatgaggaagcctgaaAaagacaaagcataaataatg	8	6	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111395742	G	G	111395742	1	3	206	0	1	0	0	0	0	0	0	0	1580	29	1	5		5	BUB1	2	111395742	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	5436519	111395742	131803631	135	161318											
ACOXL	55289	broad.mit.edu	37	chr2	111542323	111542323	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcaggcagagaaaacaaaGaattttgtcagccgaagcct	9	8	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111542323	T	T	111542323	3	4	206	1	0	0	0	0	1	0	0	0	161	933	33	3	96	3	ACOXL	2	111542323	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	146581	111542323	131657050	136	161319											
IL1A	3552	broad.mit.edu	37	chr2	113537312	113537312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatatacacagtctagtaCaaacagggaaaatagttctg	8	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113537312	A	A	113537312	1	1	206	0	1	0	0	0	0	0	0	0	7720	493	17	3		3	IL1A	2	113537312	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1994989	113537312	129662061	137	161320											
DPP10	57628	broad.mit.edu	37	chr2	115991635	115991635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagggacattttaataagCaatagaataatgatgaagaa	9	2	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115991635	A	A	115991635	1	1	206	0	1	0	0	0	0	0	0	0	4767	725	25	3		3	DPP10	2	115991635	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2454323	115991635	127207738	138	161321											
MARCO	8685	broad.mit.edu	37	chr2	119752160	119752160	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatatgtgggaaggcagaGgatctctgaggagttccctg	14	8	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119752160	A	A	119752160	1	1	206	0	1	0	0	0	0	0	0	0	9403	1015	35	4		4	MARCO	2	119752160	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	3760525	119752160	123447213	139	161322											
POTEF	728378	broad.mit.edu	37	chr2	130832264	130832264	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctggaggccaccgtggcCatctcctgctcgaagtccag	13	14	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832264	T	T	130832264	3	4	206	1	0	0	0	0	1	0	0	0	12361	594	21	4	450	4	POTEF	2	130832264	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	11080104	130832264	112367109	140	161323											
MGAT5	4249	broad.mit.edu	37	chr2	135075164	135075164	+	Frame_Shift_Del	DEL	G	-	-													gacggctaccctcactgtgaGggaaagatcaaggtaaggca							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135075164	-	-	135075164	7	5	206	1	0	1	0	1	0	0	0	0	9641	991	35	0	481	0	MGAT5	2	135075164	Frame_Shift_Del	DEL	G	TCGA-73-4666-01A-01D-1265-08	4242900	135075164	108124209	141	161324											
ZRANB3	84083	broad.mit.edu	37	chr2	136269205	136269205	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgaatctcctcaaagcCtggttgttgttagacagaag	10	8	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136269205	G	G	136269205	1	3	206	0	1	0	0	0	0	0	0	0	18353	696	24	4		4	ZRANB3	2	136269205	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1194041	136269205	106930168	142	161325											
LRP1B	53353	broad.mit.edu	37	chr2	141004719	141004719	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacactgtgtgcctgaccaGttggtggagcatctaaaaat	10	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141004719	A	A	141004719	2	1	206	1	0	0	0	0	0	0	0	1	9042	1020	36	4		4	LRP1B	2	141004719	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	4735514	141004719	102194654	143	161326											
LRP1B	53353	broad.mit.edu	37	chr2	141128282	141128282	+	Frame_Shift_Del	DEL	T	-	-													acacaaaaataccttacctcTttcacagttctcttcatcac							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	141128282	-	-	141128282	7	5	206	1	0	1	0	1	0	0	0	0	9042	1617	56	0	2878	0	LRP1B	2	141128282	Frame_Shift_Del	DEL	T	TCGA-73-4666-01A-01D-1265-08	123563	141128282	102071091	144	161327											
LRP1B	53353	broad.mit.edu	37	chr2	141208161	141208161	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcaggttcatcagatcCatcaccacagtcatccacgg	7	14	6	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141208161	G	G	141208161	3	3	206	1	0	0	0	0	1	0	0	0	9042	603	21	4	3882	4	LRP1B	2	141208161	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	79879	141208161	101991212	145	161328											
NEB	4703	broad.mit.edu	37	chr2	152483836	152483836	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtatacgttcttcaaTatatgaaggccaaattgaat	6	6	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152483836	C	C	152483836	1	2	206	0	1	0	0	0	0	0	0	0	10397	1421	49	5		5	NEB	2	152483836	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	11275675	152483836	90715537	146	161329											
ACVR1C	130399	broad.mit.edu	37	chr2	158397769	158397769	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattctgtctatgactttatAgcagtccagtaaaacaatct	6	8	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158397769	T	T	158397769	1	4	206	0	1	0	0	0	0	0	0	0	222	435	15	5		5	ACVR1C	2	158397769	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	5913933	158397769	84801604	147	161330											
KCNH7	90134	broad.mit.edu	37	chr2	163279808	163279808	+	Intron	DEL	C	-	-													ttttggctatcactataatgCctgcggcactttcattttgg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	163279808	-	-	163279808	6	5	206	0	1	1	0	1	0	0	0	0	8107	739	26	0		0	KCNH7	2	163279808	Intron	DEL	C	TCGA-73-4666-01A-01D-1265-08	4882039	163279808	79919565	148	161331											
SCN2A	6326	broad.mit.edu	37	chr2	166165116	166165116	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgtttatgtcatctttaaGatatgtacttgtaaattaac	6	5	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166165116	T	T	166165116	1	4	206	0	1	0	0	0	0	0	0	0	14029	957	33	3		3	SCN2A	2	166165116	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2885308	166165116	77034257	149	161332											
SCN2A	6326	broad.mit.edu	37	chr2	166243334	166243334	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgatcctcatctgccttAacatggtcaccatgatggtg	8	11	4	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166243334	T	T	166243334	3	4	206	1	0	0	0	0	1	0	0	0	14029	362	13	5	4824	5	SCN2A	2	166243334	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	78218	166243334	76956039	150	161333											
XIRP2	129446	broad.mit.edu	37	chr2	168106765	168106765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaaacgtgaagaactgCaacagattttgtcgagagtg	12	5	0	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168106765	A	A	168106765	3	1	206	1	0	0	0	0	1	0	0	0	17557	711	25	3	8893	3	XIRP2	2	168106765	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1863431	168106765	75092608	151	161334											
NOSTRIN	115677	broad.mit.edu	37	chr2	169707963	169707963	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattaatggagaatcttaggTactgagggacttacattgaa	10	5	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169707963	A	A	169707963	1	1	206	0	1	0	0	0	0	0	0	0	10641	1653	57	5		5	NOSTRIN	2	169707963	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	1601198	169707963	73491410	152	161335											
PDK1	5163	broad.mit.edu	37	chr2	173429789	173429789	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccaaactgcaatgtacttGaagttattaaaggtaaatac	6	6	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173429789	T	T	173429789	4	4	206	1	0	0	0	0	0	1	0	0	11769	1291	45	3	697	3	PDK1	2	173429789	Nonsense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	3721826	173429789	69769584	153	161336											
CHRNA1	1134	broad.mit.edu	37	chr2	175624016	175624016	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcccaggtttaatttcagTgtgaatgaaaacgacacaca	10	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175624016	A	A	175624016	1	1	206	0	1	0	0	0	0	0	0	0	3412	1711	59	5		5	CHRNA1	2	175624016	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2194227	175624016	67575357	154	161337											
TTN	7273	broad.mit.edu	37	chr2	179584212	179584212	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtagttttgcgtttaaagaGaagttttattctgtgcccct	10	6	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179584212	T	T	179584212	1	4	206	0	1	0	0	0	0	0	0	0	16861	957	33	3		3	TTN	2	179584212	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3960196	179584212	63615161	155	161338											
PDE1A	5136	broad.mit.edu	37	chr2	183095702	183095702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcattcttactcaaataacCaattctaagagcatttcact	2	10	5	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183095702	A	A	183095702	1	1	206	0	1	0	0	0	0	0	0	0	11727	609	21	2		2	PDE1A	2	183095702	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3511490	183095702	60103671	156	161339											
DIRC1	116093	broad.mit.edu	37	chr2	189599710	189599710	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaggaagagacccagctGagtatacgaaataaattcat	9	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189599710	A	A	189599710	1	1	206	0	1	0	0	0	0	0	0	0	4573	1305	45	4		4	DIRC1	2	189599710	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	6504008	189599710	53599663	157	161340											
COL3A1	1281	broad.mit.edu	37	chr2	189871540	189871540	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcaaaaacaatattaacttCcaataattgcatgcatacta	4	8	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189871540	T	T	189871540	1	4	206	0	1	0	0	0	0	0	0	0	3720	870	30	4		4	COL3A1	2	189871540	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	271830	189871540	53327833	158	161341											
COL5A2	1290	broad.mit.edu	37	chr2	189923246	189923246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctttccccaggatttcctCgttctccctagcacaaaatt	4	15	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189923246	A	A	189923246	3	1	206	1	0	0	0	0	1	0	0	0	3729	884	31	3	2449	3	COL5A2	2	189923246	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	51706	189923246	53276127	159	161342											
STAT1	6772	broad.mit.edu	37	chr2	191847322	191847322	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcactaaaacatatgtccaTcccaaagttcaattctagtt	5	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191847322	C	C	191847322	1	2	206	0	1	0	0	0	0	0	0	0	15382	1450	50	5		5	STAT1	2	191847322	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	1924076	191847322	51352051	160	161343											
DNAH7	56171	broad.mit.edu	37	chr2	196915773	196915773	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatagttatttgtcctaaTatgcacacctcatagaattt	5	7	1	2	rs139069790	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196915773	C	C	196915773	1	2	206	0	1	0	0	0	0	0	0	0	4646	1421	49	5		5	DNAH7	2	196915773	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	5068451	196915773	46283600	161	161344											
AOX1	316	broad.mit.edu	37	chr2	201521559	201521559	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacagttttcgtcttttctGctcaggctgctgccttggtt	9	10	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201521559	A	A	201521559	1	1	206	0	1	0	0	0	0	0	0	0	731	1334	46	4		4	AOX1	2	201521559	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	4605786	201521559	41677814	162	161345											
PARD3B	117583	broad.mit.edu	37	chr2	206480498	206480499	+	Missense_Mutation	DNP	GG	TT	TT													cagtacccttaccgaacccaGgattcccggcagaagaaccc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	206480499	TT	TT	206480498	3	4	206	1	0	0	0	0	1	0	0	0	11538	991	35	2	3669	2	PARD3B	2	206480498	Missense_Mutation	DNP	GG	TCGA-73-4666-01A-01D-1265-08	4958939	206480498	36718875	163	161346											
CCNYL1	151195	broad.mit.edu	37	chr2	208591507	208591507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaatcagatgattagcaaCtacttttatactgtggcatt	7	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208591507	A	A	208591507	1	1	206	0	1	0	0	0	0	0	0	0	2967	580	20	3		3	CCNYL1	2	208591507	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2111009	208591507	34607866	164	161347											
CPS1	1373	broad.mit.edu	37	chr2	211444258	211444258	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtattaagagtcctatgccTaactgtagcaacaatttact	7	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211444258	A	A	211444258	1	1	206	0	1	0	0	0	0	0	0	0	3855	1537	53	5		5	CPS1	2	211444258	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2852751	211444258	31755115	165	161348											
CPS1	1373	broad.mit.edu	37	chr2	211525369	211525369	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataattcctgctgactatgTtgcaattaaggtaacatttt	6	7	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211525369	C	C	211525369	3	2	206	1	0	0	0	0	1	0	0	0	3855	1725	60	5	4065	5	CPS1	2	211525369	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	81111	211525369	31674004	166	161349											
ABCA12	26154	broad.mit.edu	37	chr2	215813272	215813272	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggggtgggggatggaagtaGaaacaataatggtttcaaat	15	2	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215813272	A	A	215813272	1	1	206	0	1	0	0	0	0	0	0	0	30	957	33	4		4	ABCA12	2	215813272	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	4287903	215813272	27386101	167	161350											
ABCA12	26154	broad.mit.edu	37	chr2	215833452	215833452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaaatttaccttggcaaGtgttctattggcagggactc	9	8	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215833452	T	T	215833452	3	4	206	1	0	0	0	0	1	0	0	0	30	1029	36	3	2081	3	ABCA12	2	215833452	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	20180	215833452	27365921	168	161351											
MOGAT1	116255	broad.mit.edu	37	chr2	223574470	223574470	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagttggccgcccgatccCtgttcgtcagactctgaacc	10	15	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223574470	G	G	223574470	3	3	206	1	0	0	0	0	1	0	0	0	9788	681	24	4	891	4	MOGAT1	2	223574470	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	7741018	223574470	19624903	169	161352											
COL4A4	1286	broad.mit.edu	37	chr2	227877074	227877074	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacctgctagcatttaccGtgcttataccgtatgccagc	8	13	0	0	rs76763554	byFrequency;by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227877074	T	T	227877074	1	4	206	0	1	0	0	0	0	0	0	0	3725	1160	40	3		3	COL4A4	2	227877074	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	4302604	227877074	15322299	170	161353											
WDR69	164781	broad.mit.edu	37	chr2	228786324	228786324	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcattttttcttgattggctGttagagttcccaagctgaat	8	7	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228786324	C	C	228786324	1	2	206	0	1	0	0	0	0	0	0	0	17446	1392	48	4		4	WDR69	2	228786324	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	909250	228786324	14413049	171	161354											
TRIP12	9320	broad.mit.edu	37	chr2	230655921	230655921	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcttcctcttttaccacCaacacaatctttattacttt	2	13	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230655921	T	T	230655921	3	4	206	1	0	0	0	0	1	0	0	0	16681	594	21	4	1793	4	TRIP12	2	230655921	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1869597	230655921	12543452	172	161355											
TRIP12	9320	broad.mit.edu	37	chr2	230663565	230663565	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctgatatgggaatagaaGaaacataaaactccccccac	6	10	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230663565	T	T	230663565	1	4	206	0	1	0	0	0	0	0	0	0	16681	957	33	3		3	TRIP12	2	230663565	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	7644	230663565	12535808	173	161356											
NGEF	25791	broad.mit.edu	37	chr2	233757470	233757470	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	accagtatccctggccaactCcggtggctcatgtggacctt	10	14	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233757470	T	T	233757470	1	4	206	0	1	0	0	0	0	0	0	0	10489	870	30	4		4	NGEF	2	233757470	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3093905	233757470	9441903	174	161357											
ESPNL	339768	broad.mit.edu	37	chr2	239039107	239039107	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcctcagaggtggccccCggggtgcagcccctgccctt	15	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239039107	A	A	239039107	2	1	206	1	0	0	0	0	0	0	0	1	5297	639	23	1		1	ESPNL	2	239039107	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	5281637	239039107	4160266	175	161358											
C2orf54	79919	broad.mit.edu	37	chr2	241829664	241829664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccggaggttcgggccctGgccagggtcgtgctgtgctg	18	13	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241829664	T	T	241829664	1	4	206	0	1	0	0	0	0	0	0	0	2197	1363	47	2		2	C2orf54	2	241829664	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2790557	241829664	1369709	176	161359											
SEPT2	4735	broad.mit.edu	37	chr2	242276804	242276804	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttctctcagttttaagAcaattatctcctatattgat	4	8	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242276804	G	G	242276804	3	3	206	1	0	0	0	0	1	0	0	0	14177	275	10	5	367	5	SEPT2	2	242276804	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	447140	242276804	922569	177	161360											
C2orf85	285093	broad.mit.edu	37	chr2	242814788	242814788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagcccaccgatggccctGtggccactaaagaggcctcc	12	16	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242814788	T	T	242814788	3	4	206	1	0	0	0	0	1	0	0	0	2222	1377	48	3	1087	3	C2orf85	2	242814788	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	537984	242814788	384585	178	161361											
GRM7	2917	broad.mit.edu	37	chr3	7721839	7721839	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacatcatcattttccaccCtgaactcaatgtccagaaac	4	13	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7721839	A	A	7721839	3	1	206	1	0	0	0	0	1	0	0	0	6868	681	24	2	2589	2	GRM7	3	7721839	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08		7721839	190300591	179	161362											
SLC6A11	6538	broad.mit.edu	37	chr3	10953680	10953680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatggagtttttctgaagGgtagagtgtgggtgggggat	18	2	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10953680	T	T	10953680	1	4	206	0	1	0	0	0	0	0	0	0	14788	1247	43	2		2	SLC6A11	3	10953680	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3231841	10953680	187068750	180	161363											
FBLN2	2199	broad.mit.edu	37	chr3	13613083	13613083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagtgcccaggaagccgCaagttctgccccattcccac	10	15	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13613083	A	A	13613083	3	1	206	1	0	0	0	0	1	0	0	0	5756	711	25	3		3	FBLN2	3	13613083	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2659403	13613083	184409347	181	161364											
CAPN7	23473	broad.mit.edu	37	chr3	15282026	15282026	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttggagtcatttacgttGgaaaggaagatacagtgaaa	11	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15282026	T	T	15282026	3	4	206	1	0	0	0	0	1	0	0	0	2657	1357	47	2	1504	2	CAPN7	3	15282026	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1668943	15282026	182740404	182	161365											
CNOT10	25904	broad.mit.edu	37	chr3	32746537	32746537	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaaacacaaatagttaagGaaaataaatgtgatttgtct	7	3	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32746537	T	T	32746537	1	4	206	0	1	0	0	0	0	0	0	0	3650	1189	41	3		3	CNOT10	3	32746537	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	17464511	32746537	165275893	183	161366											
C3orf39	84892	broad.mit.edu	37	chr3	43121132	43121132	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggattaatgggcccagggaCgctgaactgcaggagccacc	15	11	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43121132	T	T	43121132	1	4	206	0	1	0	0	0	0	0	0	0	2251	551	19	4		4	C3orf39	3	43121132	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	10374595	43121132	154901298	184	161367											
EXOSC7	23016	broad.mit.edu	37	chr3	45030648	45030648	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggaagacctccgtgtggAtggccgtggctgtgaggact	16	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45030648	G	G	45030648	3	3	206	1	0	0	0	0	1	0	0	0	5362	333	12	5	80	5	EXOSC7	3	45030648	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1909516	45030648	152991782	185	161368											
SETD2	29072	broad.mit.edu	37	chr3	47158149	47158149	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgattaagacaatcttccCcacatgctatttcaccttga	5	12	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47158149	A	A	47158149	3	1	206	1	0	0	0	0	1	0	0	0	14244	623	22	2	3216	2	SETD2	3	47158149	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2127501	47158149	150864281	186	161369											
NPRL2	10641	broad.mit.edu	37	chr3	50385143	50385143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggtcagtggccttggcCtggccaccctgccctgaacc	13	15	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50385143	A	A	50385143	1	1	206	0	1	0	0	0	0	0	0	0	10692	696	24	2		2	NPRL2	3	50385143	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3226994	50385143	147637287	187	161370											
DOCK3	1795	broad.mit.edu	37	chr3	51264852	51264852	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttccggggctcccacctgCgctttgagttcagacattgt	12	12	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51264852	A	A	51264852	3	1	206	1	0	0	0	0	1	0	0	0	4728	768	27	3	1578	3	DOCK3	3	51264852	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	879709	51264852	146757578	188	161371											
PBRM1	55193	broad.mit.edu	37	chr3	52610552	52610552	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataaaaaagcacaaataCctaccgagaatacatgtcat	4	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52610552	A	A	52610552	1	1	206	0	1	0	0	0	0	0	0	0	11585	522	18	3		3	PBRM1	3	52610552	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1345700	52610552	145411878	189	161372											
ERC2	26059	broad.mit.edu	37	chr3	55922479	55922479	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggaggttggccaagtgcgcTtctttttcggccagggactg	15	10	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55922479	G	G	55922479	3	3	206	1	0	0	0	0	1	0	0	0	5253	1606	56	5	387	5	ERC2	3	55922479	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	3311927	55922479	142099951	190	161373											
PDZRN3	23024	broad.mit.edu	37	chr3	73440127	73440127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaaaaaacccttttgGtcttgatacgatagttagaa	7	5	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73440127	T	T	73440127	1	4	206	0	1	0	0	0	0	0	0	0	11803	1276	44	3		3	PDZRN3	3	73440127	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	17517648	73440127	124582303	191	161374											
EPHA3	2042	broad.mit.edu	37	chr3	89478448	89478448	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcttctgaggctaaatAgacagagaagggctgtaaaa	11	5	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89478448	C	C	89478448	1	2	206	0	1	0	0	0	0	0	0	0	5210	435	15	5		5	EPHA3	3	89478448	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	16038321	89478448	108543982	192	161375											
EPHA6	285220	broad.mit.edu	37	chr3	97251132	97251132	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaagtatgtcactgtaTgacagtttgactcttctgaa	8	6	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97251132	A	A	97251132	1	1	206	0	1	0	0	0	0	0	0	0	5213	1479	51	5		5	EPHA6	3	97251132	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	7772684	97251132	100771298	193	161376											
CEP97	79598	broad.mit.edu	37	chr3	101443408	101443408	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtaagcagccaattgggcCgtctgggagccgtgcatcct	14	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101443408	T	T	101443408	1	4	206	0	1	0	0	0	0	0	0	0	3293	667	23	4		4	CEP97	3	101443408	5'Flank	SNP	C	TCGA-73-4666-01A-01D-1265-08	4192276	101443408	96579022	194	161377											
KIAA1407	57577	broad.mit.edu	37	chr3	113723453	113723453	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctaggagagaagataacaAccaccaaggccaccaccgag	9	13	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113723453	G	G	113723453	1	3	206	0	1	0	0	0	0	0	0	0	8299	58	2	5		5	KIAA1407	3	113723453	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	12280045	113723453	84298977	195	161378											
TIGIT	201633	broad.mit.edu	37	chr3	114026903	114026903	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcggggagaggactgtgcCgagctgcatgactacttcaa	14	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114026903	T	T	114026903	2	4	206	1	0	0	0	0	0	0	0	1	16025	639	23	4		4	TIGIT	3	114026903	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	303450	114026903	83995527	196	161379											
ZBTB20	26137	broad.mit.edu	37	chr3	114069085	114069085	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcccacagccccctcagcCcctgctgccaggcctccagg	8	22	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114069085	G	G	114069085	1	3	206	0	1	0	0	0	0	0	0	0	17655	638	22	4		4	ZBTB20	3	114069085	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	42182	114069085	83953345	197	161380											
C3orf1	51300	broad.mit.edu	37	chr3	119217733	119217733	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccagagccctattacccGgaatctggatgggaccgcct	11	14	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119217733	A	A	119217733	2	1	206	1	0	0	0	0	0	0	0	1	2228	1103	39	4		4	C3orf1	3	119217733	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	5148648	119217733	78804697	198	161381											
GTF2E1	2960	broad.mit.edu	37	chr3	120469602	120469602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agttttgaataatttaaaggGagacaagtttatcaaatgca	8	3	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120469602	T	T	120469602	3	4	206	1	0	0	0	0	1	0	0	0	6921	1174	41	3	205	3	GTF2E1	3	120469602	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1251869	120469602	77552828	199	161382											
SLC15A2	6565	broad.mit.edu	37	chr3	121634151	121634151	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatttctacatttatcacAcccatgctgagaggttagga	8	8	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121634151	G	G	121634151	2	3	206	1	0	0	0	0	0	0	0	1	14512	146	6	5		5	SLC15A2	3	121634151	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	1164549	121634151	76388279	200	161383											
ILDR1	286676	broad.mit.edu	37	chr3	121712106	121712106	+	Frame_Shift_Del	DEL	C	-	-													agtgtggggagtgcgagccgCggcggtgggcccgccagctc					rs146620043		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121712106	-	-	121712106	7	5	206	1	0	1	0	1	0	0	0	0	7779	768	27	0	158	0	ILDR1	3	121712106	Frame_Shift_Del	DEL	C	TCGA-73-4666-01A-01D-1265-08	77955	121712106	76310324	201	161384											
CASR	846	broad.mit.edu	37	chr3	122003461	122003461	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaggtggctgcccgggCcacgctgcgccgcagcaacg	14	15	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122003461	G	G	122003461	3	3	206	1	0	0	0	0	1	0	0	0	2708	739	26	4	2712	4	CASR	3	122003461	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	291355	122003461	76018969	202	161385											
MYLK	4638	broad.mit.edu	37	chr3	123458844	123458844	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccaagctgcttcgcaaaActtcctgcaagaaaaagagt	8	10	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123458844	T	T	123458844	3	4	206	1	0	0	0	0	1	0	0	0	10150	40	2	5	5482	5	MYLK	3	123458844	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1455383	123458844	74563586	203	161386											
MCM2	4171	broad.mit.edu	37	chr3	127335690	127335690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccactctccccctcccccGcttctactcatcccctccag	2	25	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127335690	T	T	127335690	1	4	206	0	1	0	0	0	0	0	0	0	9479	1102	38	3		3	MCM2	3	127335690	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3876846	127335690	70686740	204	161387											
PIK3R4	30849	broad.mit.edu	37	chr3	130463531	130463549	+	Frame_Shift_Del	DEL	CTTCTGGAAGATAAGTGGG	-	-													attgaaatctgccgggttgtCttctggaagataagtgggct							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130463549	-	-	130463531	7	5	206	1	0	1	0	1	0	0	0	0	12016	913	32	0	3620	0	PIK3R4	3	130463531	Frame_Shift_Del	DEL	CTTCTGGAAGATAAGTGGG	TCGA-73-4666-01A-01D-1265-08	3127841	130463531	67558899	205	161388											
EPHB1	2047	broad.mit.edu	37	chr3	134911494	134911494	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacgtggccatcaagaccctGaaggcagggtactcggagaa	13	10	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134911494	T	T	134911494	2	4	206	1	0	0	0	0	0	0	0	1	5216	1277	45	3		3	EPHB1	3	134911494	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	4447963	134911494	63110936	206	161389											
DZIP1L	199221	broad.mit.edu	37	chr3	137820499	137820499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtgaggcccccataggCcgagctcagaccacctgcat	11	15	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137820499	A	A	137820499	1	1	206	0	1	0	0	0	0	0	0	0	4904	754	26	3		3	DZIP1L	3	137820499	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2909005	137820499	60201931	207	161390											
PRR23A	729627	broad.mit.edu	37	chr3	138724774	138724774	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacgagtcgtcctgcgctcCtgagcgttcgtcgacagagc	13	13	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138724774	A	A	138724774	4	1	206	1	0	0	0	0	0	1	0	0	12700	690	24	2	467	2	PRR23A	3	138724774	Nonsense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	904275	138724774	59297656	208	161391											
TRIM42	287015	broad.mit.edu	37	chr3	140406710	140406710	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaagagaagatcatcatgGagcagatagagaatctagaa	11	4	3	6			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140406710	A	A	140406710	3	1	206	1	0	0	0	0	1	0	0	0	16641	1175	41	4	1196	4	TRIM42	3	140406710	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1681936	140406710	57615720	209	161392											
HPS3	84343	broad.mit.edu	37	chr3	148878161	148878161	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctttctagcttatatAttcttggttgtaatggaaaa	8	5	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148878161	T	T	148878161	1	4	206	0	1	0	0	0	0	0	0	0	7407	464	16	5		5	HPS3	3	148878161	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	8471451	148878161	49144269	210	161393											
MME	4311	broad.mit.edu	37	chr3	154889939	154889939	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atattaaaaagaatggcgaaGaaaaattacttcctggactt	7	5	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154889939	C	C	154889939	3	2	206	1	0	0	0	0	1	0	0	0	9738	943	33	4	2092	4	MME	3	154889939	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	6011778	154889939	43132491	211	161394											
SCHIP1	29970	broad.mit.edu	37	chr3	159603965	159603965	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaataacaaacagctaagTagaactagtgtcctgtttgt	7	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159603965	A	A	159603965	1	1	206	0	1	0	0	0	0	0	0	0	14017	1653	57	5		5	SCHIP1	3	159603965	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	4714026	159603965	38418465	212	161395											
KPNA4	3840	broad.mit.edu	37	chr3	160232067	160232067	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactgtcccaatgattttaCtacgaaatgagctccataat	5	10	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160232067	T	T	160232067	1	4	206	0	1	0	0	0	0	0	0	0	8503	580	20	4		4	KPNA4	3	160232067	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	628102	160232067	37790363	213	161396											
ZBBX	79740	broad.mit.edu	37	chr3	167078554	167078554	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atttgtcaggtatatattatCttattcaacgaaagttgcca	6	6	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167078554	A	A	167078554	1	1	206	0	1	0	0	0	0	0	0	0	17643	928	32	3		3	ZBBX	3	167078554	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	6846487	167078554	30943876	214	161397											
WDR49	151790	broad.mit.edu	37	chr3	167246840	167246840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataatgtttttcaatttacCtctatattccagattttcaa	3	7	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167246840	A	A	167246840	3	1	206	1	0	0	0	0	1	0	0	0	17429	695	24	2	767	2	WDR49	3	167246840	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	168286	167246840	30775590	215	161398											
TBL1XR1	79718	broad.mit.edu	37	chr3	176771667	176771667	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatattggactgactgataTggctttctataccaaaggta	8	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	176771667	C	C	176771667	3	2	206	1	0	0	0	0	1	0	0	0	15762	1464	51	5	1498	5	TBL1XR1	3	176771667	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	9524827	176771667	21250763	216	161399											
MFN1	55669	broad.mit.edu	37	chr3	179096185	179096185	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttggctgatcgatgcacCgatgaagtaaacgccttagt	10	8	0	2	rs138738004	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179096185	A	A	179096185	2	1	206	1	0	0	0	0	0	0	0	1	9616	639	23	1		1	MFN1	3	179096185	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	2324518	179096185	18926245	217	161400											
ABCC5	10057	broad.mit.edu	37	chr3	183682968	183682968	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggtcaggggcggaaggccTgtacctccgtcaggtcgctg	16	12	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183682968	A	A	183682968	1	1	206	0	1	0	0	0	0	0	0	0	56	1595	55	5		5	ABCC5	3	183682968	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	4586783	183682968	14339462	218	161401											
AP2M1	1173	broad.mit.edu	37	chr3	183896907	183896907	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctcatatatgagctgctgGatggtgaggctggcgggctg	17	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183896907	T	T	183896907	3	4	206	1	0	0	0	0	1	0	0	0	744	1174	41	3	343	3	AP2M1	3	183896907	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	213939	183896907	14125523	219	161402											
IGF2BP2	10644	broad.mit.edu	37	chr3	185374930	185374930	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaagatgagagcggacggGaatagtcatggggcaaatgt	17	4	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185374930	A	A	185374930	1	1	206	0	1	0	0	0	0	0	0	0	7644	1189	41	4		4	IGF2BP2	3	185374930	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1478023	185374930	12647500	220	161403											
KNG1	3827	broad.mit.edu	37	chr3	186450616	186450616	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaattaagtgccaatctccCtgtatgcttcatcccggaca	6	12	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186450616	T	T	186450616	1	4	206	0	1	0	0	0	0	0	0	0	8498	696	24	4		4	KNG1	3	186450616	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1075686	186450616	11571814	221	161404											
FGF12	2257	broad.mit.edu	37	chr3	192126018	192126018	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcgccgcagccatagctgCtcagcgagggcctcaggccc	12	16	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192126018	T	T	192126018	1	4	206	0	1	0	0	0	0	0	0	0	5898	812	28	4		4	FGF12	3	192126018	5'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	5675402	192126018	5896412	222	161405											
PDE6B	5158	broad.mit.edu	37	chr4	654433	654433	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagggcgcatagtcaggTccctgaggccgcccaggaca	14	15	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	654433	A	A	654433	1	1	206	0	1	0	0	0	0	0	0	0	11740	1682	58	5		5	PDE6B	4	654433	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08		654433	190499843	223	161406											
IDUA	3425	broad.mit.edu	37	chr4	994668	994668	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcagccctcctgtgttccAgggtttgagctgatgggcag	16	10	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	994668	C	C	994668	5	2	206	1	0	0	0	0	0	0	1	0	7574	202	7	5	398	5	IDUA	4	994668	Splice_Site	SNP	A	TCGA-73-4666-01A-01D-1265-08	340235	994668	190159608	224	161407											
KIAA1530	57654	broad.mit.edu	37	chr4	1369127	1369127	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttgtgggagtggtggcaGggagtggacacgtgtctgtt	21	4	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1369127	A	A	1369127	1	1	206	0	1	0	0	0	0	0	0	0	8311	1015	35	4		4	KIAA1530	4	1369127	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	374459	1369127	189785149	225	161408											
SH3BP2	6452	broad.mit.edu	37	chr4	2831101	2831101	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctgctgggtgggcagGctgtggggtgggcctaccat	20	9	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2831101	T	T	2831101	1	4	206	0	1	0	0	0	0	0	0	0	14358	1218	42	3		3	SH3BP2	4	2831101	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1461974	2831101	188323175	226	161409											
RGS12	6002	broad.mit.edu	37	chr4	3427249	3427249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgagtctggacggacagcGggttgtcttggaggagaagg	18	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3427249	T	T	3427249	3	4	206	1	0	0	0	0	1	0	0	0	13404	1116	39	1	3401	1	RGS12	4	3427249	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	596148	3427249	187727027	227	161410											
OTOP1	133060	broad.mit.edu	37	chr4	4198810	4198810	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcaatttacccatttaaCaaatctgcatgtgtacccct	4	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4198810	A	A	4198810	1	1	206	0	1	0	0	0	0	0	0	0	11399	493	17	3		3	OTOP1	4	4198810	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	771561	4198810	186955466	228	161411											
D4S234E	27065	broad.mit.edu	37	chr4	4393076	4393076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttccaaaaagtagtggctGttctcgttcttgtgaatttc	8	7	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4393076	T	T	4393076	1	4	206	0	1	0	0	0	0	0	0	0	4247	1392	48	3		3	D4S234E	4	4393076	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	194266	4393076	186761200	229	161412											
BOD1L	259282	broad.mit.edu	37	chr4	13605199	13605199	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggatcaatgtcatatcacCactcttttttggtctctgaa	7	9	5	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13605199	G	G	13605199	3	3	206	1	0	0	0	0	1	0	0	0	1489	594	21	4	5898	4	BOD1L	4	13605199	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	9212123	13605199	177549077	230	161413											
CCKAR	886	broad.mit.edu	37	chr4	26490990	26490990	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggagaggaggaagatgtTggtgaccgtccgcatccgct	16	9	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26490990	G	G	26490990	3	3	206	1	0	0	0	0	1	0	0	0	2908	1812	63	5	1073	5	CCKAR	4	26490990	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	12885791	26490990	164663286	231	161414											
ARAP2	116984	broad.mit.edu	37	chr4	36150077	36150077	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttgagatgtttcagctcCaaataaaaacacacgttcgg	8	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36150077	T	T	36150077	3	4	206	1	0	0	0	0	1	0	0	0	841	603	21	4	2232	4	ARAP2	4	36150077	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	9659087	36150077	155004199	232	161415											
FRYL	285527	broad.mit.edu	37	chr4	48622677	48622677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttagactttgtgctagacCgaggcctatattcataagat	8	9	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48622677	A	A	48622677	3	1	206	1	0	0	0	0	1	0	0	0	6124	652	23	1	8984	1	FRYL	4	48622677	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	12472600	48622677	142531599	233	161416											
KIT	3815	broad.mit.edu	37	chr4	55598246	55598246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttttgagaacagaGcattttagagccatagttaa	7	4	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55598246	T	T	55598246	1	4	206	0	1	0	0	0	0	0	0	0	8400	986	34	3		3	KIT	4	55598246	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	6975569	55598246	135556030	234	161417											
KDR	3791	broad.mit.edu	37	chr4	55972900	55972900	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgatttttattaacttcaAttttatttcctccctggaag	4	7	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55972900	G	G	55972900	3	3	206	1	0	0	0	0	1	0	0	0	8209	101	4	5	2660	5	KDR	4	55972900	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	374654	55972900	135181376	235	161418											
KDR	3791	broad.mit.edu	37	chr4	55981184	55981185	+	Missense_Mutation	DNP	GG	TT	TT													aggaaattctgttaccatcaGgaacaaatctcttttctggg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	55981185	TT	TT	55981184	3	4	206	1	0	0	0	0	1	0	0	0	8209	1000	35	2	3659	2	KDR	4	55981184	Missense_Mutation	DNP	GG	TCGA-73-4666-01A-01D-1265-08	8284	55981184	135173092	236	161419											
CEP135	9662	broad.mit.edu	37	chr4	56837410	56837410	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttataaagttgttagaaatCttaattatagtattaaaatt	4	1	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56837410	T	T	56837410	1	4	206	0	1	0	0	0	0	0	0	0	3277	928	32	4		4	CEP135	4	56837410	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	856226	56837410	134316866	237	161420											
STAP1	26228	broad.mit.edu	37	chr4	68442798	68442798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataaaaaatacacattaGtagttctaagccaaaaaaag	4	6	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68442798	T	T	68442798	1	4	206	0	1	0	0	0	0	0	0	0	15370	1044	36	3		3	STAP1	4	68442798	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	11605388	68442798	122711478	238	161421											
RUFY3	22902	broad.mit.edu	37	chr4	71655362	71655362	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattgtcagtgctgaagtgAaaagaatgtgctgtacattc	12	5	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71655362	T	T	71655362	1	4	206	0	1	0	0	0	0	0	0	0	13851	261	9	5		5	RUFY3	4	71655362	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	3212564	71655362	119498914	239	161422											
GC	2638	broad.mit.edu	37	chr4	72622413	72622413	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgggaaaacgttttcaCatcacctctacttacttatc	4	10	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72622413	A	A	72622413	1	1	206	0	1	0	0	0	0	0	0	0	6344	493	17	3		3	GC	4	72622413	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	967051	72622413	118531863	240	161423											
NPFFR2	10886	broad.mit.edu	37	chr4	73013093	73013093	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagaagatcattaagatgcTcctgattgtggccctgcttt	10	9	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73013093	A	A	73013093	3	1	206	1	0	0	0	0	1	0	0	0	10673	1551	54	5	1153	5	NPFFR2	4	73013093	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	390680	73013093	118141183	241	161424											
HNRPDL	9987	broad.mit.edu	37	chr4	83350391	83350391	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggagcgggggaagaagCgtgcggtacccgtcatcctg	19	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83350391	A	A	83350391	1	1	206	0	1	0	0	0	0	0	0	0	7343	783	27	3		3	HNRPDL	4	83350391	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	10337298	83350391	107803885	242	161425											
MAPK10	5602	broad.mit.edu	37	chr4	87080500	87080500	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctttagattctggtagcGcttgagaactgtgaaggttg	14	5	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87080500	A	A	87080500	3	1	206	1	0	0	0	0	1	0	0	0	9364	1087	38	4	1256	4	MAPK10	4	87080500	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	3730109	87080500	104073776	243	161426											
PKD2	5311	broad.mit.edu	37	chr4	88995854	88995854	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacttagaaagtgtttcaaAtgattgtgttgcttaagaaa	8	4	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88995854	T	T	88995854	1	4	206	0	1	0	0	0	0	0	0	0	12061	116	4	5		5	PKD2	4	88995854	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	1915354	88995854	102158422	244	161427											
ABCG2	9429	broad.mit.edu	37	chr4	89022469	89022469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaagaagagaaccccaGctctgccatgaaaaggggaa	12	9	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89022469	T	T	89022469	3	4	206	1	0	0	0	0	1	0	0	0	69	971	34	3	711	3	ABCG2	4	89022469	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	26615	89022469	102131807	245	161428											
UNC5C	8633	broad.mit.edu	37	chr4	96106091	96106091	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actattttggagaaacaagtAatgacatatgattaatttca	6	4	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96106091	T	T	96106091	1	4	206	0	1	0	0	0	0	0	0	0	17119	377	13	5		5	UNC5C	4	96106091	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	7083622	96106091	95048185	246	161429											
ADH1B	125	broad.mit.edu	37	chr4	100232725	100232725	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagtcagtagcagcataGggtttattgagaggttctgg	14	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100232725	T	T	100232725	3	4	206	1	0	0	0	0	1	0	0	0	308	1000	35	2	222	2	ADH1B	4	100232725	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	4126634	100232725	90921551	247	161430											
ADH7	131	broad.mit.edu	37	chr4	100349490	100349490	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaaaggttgaggttttgCcaaattaaacattactcagt	7	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349490	A	A	100349490	1	1	206	0	1	0	0	0	0	0	0	0	313	754	26	3		3	ADH7	4	100349490	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	116765	100349490	90804786	248	161431											
C4orf17	84103	broad.mit.edu	37	chr4	100443752	100443752	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaactacttagagaagaacAggataccatttgccaattgc	7	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100443752	T	T	100443752	3	4	206	1	0	0	0	0	1	0	0	0	2275	179	7	5	229	5	C4orf17	4	100443752	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	94262	100443752	90710524	249	161432											
DNAJB14	79982	broad.mit.edu	37	chr4	100829884	100829884	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacctgaaggaaatccaccCccaaaaaatatattaaacaa	3	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100829884	A	A	100829884	2	1	206	1	0	0	0	0	0	0	0	1	4659	610	22	2		2	DNAJB14	4	100829884	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	386132	100829884	90324392	250	161433											
COL25A1	84570	broad.mit.edu	37	chr4	109858929	109858929	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatagttgtaaacaaccagGcttagtatagaaaaagataa	7	6	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109858929	C	C	109858929	1	2	206	0	1	0	0	0	0	0	0	0	3716	1218	42	4		4	COL25A1	4	109858929	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	9029045	109858929	81295347	251	161434											
ENPEP	2028	broad.mit.edu	37	chr4	111427891	111427891	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgaagaatactttgctatGaattattctcttcctaaatt	4	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111427891	T	T	111427891	3	4	206	1	0	0	0	0	1	0	0	0	5170	1290	45	3	1031	3	ENPEP	4	111427891	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1568962	111427891	79726385	252	161435											
PITX2	5308	broad.mit.edu	37	chr4	111554097	111554097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgacccgggcaggagaaGggggttcttacctaattgca	14	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111554097	T	T	111554097	1	4	206	0	1	0	0	0	0	0	0	0	12050	1015	35	2		2	PITX2	4	111554097	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	126206	111554097	79600179	253	161436											
ANK2	287	broad.mit.edu	37	chr4	114279144	114279144	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgatatgaccaaaaggtccTatgcagatgaaagttttcac	8	7	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114279144	A	A	114279144	3	1	206	1	0	0	0	0	1	0	0	0	621	1522	53	5	9585	5	ANK2	4	114279144	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	2725047	114279144	76875132	254	161437											
ANK2	287	broad.mit.edu	37	chr4	114290956	114290956	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgatgaagatgcagcttttGaaaaggtaagacattcctct	9	7	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114290956	A	A	114290956	3	1	206	1	0	0	0	0	1	0	0	0	621	1291	45	4	11840	4	ANK2	4	114290956	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	11812	114290956	76863320	255	161438											
ZNF827	152485	broad.mit.edu	37	chr4	146744700	146744700	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgggggagggggagtgAagtttagtaaattaaagtta	19	0	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146744700	C	C	146744700	1	2	206	0	1	0	0	0	0	0	0	0	18309	261	9	5		5	ZNF827	4	146744700	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	32453744	146744700	44409576	256	161439											
ZNF827	152485	broad.mit.edu	37	chr4	146823533	146823533	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagcccttgcggccaccTccttcagaagggccgctgag	12	17	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146823533	A	A	146823533	3	1	206	1	0	0	0	0	1	0	0	0	18309	1551	54	5	2403	5	ZNF827	4	146823533	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	78833	146823533	44330743	257	161440											
DCHS2	54798	broad.mit.edu	37	chr4	155156682	155156682	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactggcatcccgggtcactCtcaagtccgcatctaaagat	8	14	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155156682	A	A	155156682	3	1	206	1	0	0	0	0	1	0	0	0	4321	913	32	3	997	3	DCHS2	4	155156682	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	8333149	155156682	35997594	258	161441											
DCHS2	54798	broad.mit.edu	37	chr4	155219891	155219891	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacaattacaaattcatttGaattgaaaaagtagcagctc	5	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155219891	T	T	155219891	1	4	206	0	1	0	0	0	0	0	0	0	4321	1305	45	3		3	DCHS2	4	155219891	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	63209	155219891	35934385	259	161442											
FSTL5	56884	broad.mit.edu	37	chr4	162697067	162697067	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctacaagtccattactgTctgcatcaaaatatttaaac	3	9	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162697067	A	A	162697067	3	1	206	1	0	0	0	0	1	0	0	0	6140	1667	58	5	2022	5	FSTL5	4	162697067	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	7477176	162697067	28457209	260	161443											
NPY5R	4889	broad.mit.edu	37	chr4	164271576	164271576	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattgggctctatacatttGtaagtcttcttggctttatg	9	6	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164271576	T	T	164271576	3	4	206	1	0	0	0	0	1	0	0	0	10705	1377	48	3	153	3	NPY5R	4	164271576	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1574509	164271576	26882700	261	161444											
NPY5R	4889	broad.mit.edu	37	chr4	164271917	164271917	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctgatagctactgtctgGacactaggttttgccatctg	9	9	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164271917	T	T	164271917	3	4	206	1	0	0	0	0	1	0	0	0	10705	1183	41	3	494	3	NPY5R	4	164271917	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	341	164271917	26882359	262	161445											
MARCH1	55016	broad.mit.edu	37	chr4	165118954	165118954	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcacgttttaggactttgaAgactcaaccagctccgctcg	9	13	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165118954	G	G	165118954	1	3	206	0	1	0	0	0	0	0	0	0	9390	87	3	5		5	MARCH1	4	165118954	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	847037	165118954	26035322	263	161446											
SPOCK3	50859	broad.mit.edu	37	chr4	167663162	167663163	+	Frame_Shift_Ins	INS	-	C	C													ctcacctaggagcttctttaINSccccttgccgcttctgaata							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167663163	C	C	167663162	7	5	206	1	0	1	1	0	0	0	0	0	15199	391	14	0	333	0	SPOCK3	4	167663162	Frame_Shift_Ins	INS	-	TCGA-73-4666-01A-01D-1265-08	2544208	167663162	23491114	264	161447											
ANXA10	11199	broad.mit.edu	37	chr4	169102724	169102724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattctaagtgttgaccttaCaatacaatgtaagaattgta	6	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169102724	A	A	169102724	1	1	206	0	1	0	0	0	0	0	0	0	715	493	17	3		3	ANXA10	4	169102724	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1439562	169102724	22051552	265	161448											
MORF4	10934	broad.mit.edu	37	chr4	174537269	174537269	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttgtacagataatctcaGgagatgtggcactccataca	8	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174537269	T	T	174537269	3	4	206	1	0	0	0	0	1	0	0	0	9799	991	35	2	184	2	MORF4	4	174537269	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	5434545	174537269	16617007	266	161449											
ODZ3	55714	broad.mit.edu	37	chr4	183601372	183601372	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagaggcaggctatacaaCaagtgttccttctttccttt	8	10	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183601372	T	T	183601372	1	4	206	0	1	0	0	0	0	0	0	0	10931	493	17	4		4	ODZ3	4	183601372	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	9064103	183601372	7552904	267	161450											
TRIML2	205860	broad.mit.edu	37	chr4	189012595	189012595	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagggagtctggacttgtgtCtccatttgggatacagaggg	16	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189012595	A	A	189012595	3	1	206	1	0	0	0	0	1	0	0	0	16676	913	32	3	71	3	TRIML2	4	189012595	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5411223	189012595	2141681	268	161451											
TRIML2	205860	broad.mit.edu	37	chr4	189013140	189013140	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctaggagttcaccaatgCcaatgccagagacatgattt	8	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189013140	G	G	189013140	1	3	206	0	1	0	0	0	0	0	0	0	16676	754	26	4		4	TRIML2	4	189013140	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	545	189013140	2141136	269	161452											
TRIML1	339976	broad.mit.edu	37	chr4	189065202	189065202	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttgcaggagcgagccactCttgcttcagtgtccagaggc	12	12	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189065202	T	T	189065202	2	4	206	1	0	0	0	0	0	0	0	1	16675	900	32	4		4	TRIML1	4	189065202	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	52062	189065202	2089074	270	161453											
ADCY2	108	broad.mit.edu	37	chr5	7695931	7695931	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctccccgggagaactagtCcacatgctgaatgagctctt	10	12	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7695931	A	A	7695931	2	1	206	1	0	0	0	0	0	0	0	1	294	842	30	3		3	ADCY2	5	7695931	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08		7695931	173219329	271	161454											
ADCY2	108	broad.mit.edu	37	chr5	7804683	7804683	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgagtaactggacggttGtcattgcttcacagcttctt	10	9	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7804683	T	T	7804683	1	4	206	0	1	0	0	0	0	0	0	0	294	1392	48	3		3	ADCY2	5	7804683	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	108752	7804683	173110577	272	161455											
DNAH5	1767	broad.mit.edu	37	chr5	13721177	13721177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccatggacacataacGggtttctatttttaatctct	7	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13721177	T	T	13721177	3	4	206	1	0	0	0	0	1	0	0	0	4644	1116	39	1	1699	1	DNAH5	5	13721177	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	5916494	13721177	167194083	273	161456											
PRDM9	56979	broad.mit.edu	37	chr5	23521214	23521214	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttactgaatgcaagtggctCagagcaggctcagaaaccag	11	9	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23521214	A	A	23521214	4	1	206	1	0	0	0	0	0	1	0	0	12569	838	29	3	452	3	PRDM9	5	23521214	Nonsense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	9800037	23521214	157394046	274	161457											
ADAMTS12	81792	broad.mit.edu	37	chr5	33615811	33615811	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatatctcattcccctccctGctccttgctaaaagaggttt	5	13	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33615811	C	C	33615811	1	2	206	0	1	0	0	0	0	0	0	0	257	1334	46	4		4	ADAMTS12	5	33615811	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	10094597	33615811	147299449	275	161458											
UGT3A1	133688	broad.mit.edu	37	chr5	35954378	35954378	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcttcccacaaagccacaTagtgcccagagtgagcccca	8	16	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35954378	C	C	35954378	3	2	206	1	0	0	0	0	1	0	0	0	17089	1406	49	5	77	5	UGT3A1	5	35954378	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	2338567	35954378	144960882	276	161459											
NIPBL	25836	broad.mit.edu	37	chr5	37049380	37049380	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcattgcattgactctaaatCaaggtcttattcatccagtt	5	9	5	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37049380	G	G	37049380	3	3	206	1	0	0	0	0	1	0	0	0	10523	827	29	4	7085	4	NIPBL	5	37049380	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1095002	37049380	143865880	277	161460											
EGFLAM	133584	broad.mit.edu	37	chr5	38430170	38430171	+	Intron	DNP	CC	AT	AT													tgtaggggcaatctgacgtgCcatcatcaatgttcttcacg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	38430171	AT	AT	38430170	1	1	206	0	1	0	0	0	0	0	0	0	5006	754	26	3		3	EGFLAM	5	38430170	Intron	DNP	CC	TCGA-73-4666-01A-01D-1265-08	1380790	38430170	142485090	278	161461											
C7	730	broad.mit.edu	37	chr5	40955683	40955684	+	Intron	DNP	GG	TT	TT													aggctttgtttaaagcaataGgaagcagtcatgtttatttg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	40955684	TT	TT	40955683	1	4	206	0	1	0	0	0	0	0	0	0	2400	1015	35	2		2	C7	5	40955683	Intron	DNP	GG	TCGA-73-4666-01A-01D-1265-08	2525513	40955683	139959577	279	161462											
CCL28	56477	broad.mit.edu	37	chr5	43382065	43382065	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcaaacatttcctttaCcatttttcttggcagcttgc	7	10	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43382065	A	A	43382065	3	1	206	1	0	0	0	0	1	0	0	0	2928	507	18	3	106	3	CCL28	5	43382065	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2426382	43382065	137533195	280	161463											
CDC20B	166979	broad.mit.edu	37	chr5	54415862	54415862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctccagtacagctgggGtaggatgttaaagaaattac	10	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54415862	T	T	54415862	1	4	206	0	1	0	0	0	0	0	0	0	3090	1276	44	3		3	CDC20B	5	54415862	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	11033797	54415862	126499398	281	161464											
ADAMTS6	11174	broad.mit.edu	37	chr5	64447678	64447678	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtcagtgtccttggcaGgtcttacaacacatctgtct	11	10	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64447678	T	T	64447678	2	4	206	1	0	0	0	0	0	0	0	1	270	987	35	2		2	ADAMTS6	5	64447678	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	10031816	64447678	116467582	282	161465											
ADAMTS6	11174	broad.mit.edu	37	chr5	64756173	64756173	+	Intron	DEL	A	-	-													caataacaccatgctaaaagAaaaataaacaaagaacttac							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64756173	-	-	64756173	6	5	206	0	1	1	0	1	0	0	0	0	270	261	9	0		0	ADAMTS6	5	64756173	Intron	DEL	A	TCGA-73-4666-01A-01D-1265-08	308495	64756173	116159087	283	161466											
BDP1	55814	broad.mit.edu	37	chr5	70808256	70808256	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagatattaatttaagGtacaagtgtgtttttaaaga	7	2	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70808256	T	T	70808256	5	4	206	1	0	0	0	0	0	0	1	0	1400	1275	44	3	4318	3	BDP1	5	70808256	Splice_Site	SNP	G	TCGA-73-4666-01A-01D-1265-08	6052083	70808256	110107004	284	161467											
MRPS27	23107	broad.mit.edu	37	chr5	71616096	71616096	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggttacggacagaggaaGgggcggggttacagctcgac	18	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71616096	T	T	71616096	1	4	206	0	1	0	0	0	0	0	0	0	9932	1015	35	2		2	MRPS27	5	71616096	5'Flank	SNP	G	TCGA-73-4666-01A-01D-1265-08	807840	71616096	109299164	285	161468											
IQGAP2	10788	broad.mit.edu	37	chr5	75902107	75902107	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtattgatatggttaatgctCaaattcaagaagaaaatgac	8	4	2	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75902107	T	T	75902107	4	4	206	1	0	0	0	0	0	1	0	0	7885	827	29	4	1382	4	IQGAP2	5	75902107	Nonsense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4286011	75902107	105013153	286	161469											
VCAN	1462	broad.mit.edu	37	chr5	82833774	82833774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagaagaagatgaagataCaatgttcaccatggtaactg	10	6	1	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82833774	A	A	82833774	3	1	206	1	0	0	0	0	1	0	0	0	17265	478	17	3	4978	3	VCAN	5	82833774	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	6931667	82833774	98081486	287	161470											
NR2F1	7025	broad.mit.edu	37	chr5	92929574	92929574	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcgcttcccacctgccccGtccccctagagactcagagg	11	18	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92929574	A	A	92929574	1	1	206	0	1	0	0	0	0	0	0	0	10722	1160	40	4		4	NR2F1	5	92929574	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	10095800	92929574	87985686	288	161471											
POU5F2	134187	broad.mit.edu	37	chr5	93076803	93076803	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtctggctaagcaccttcCcaaacagagctcccacagcg	8	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93076803	A	A	93076803	3	1	206	1	0	0	0	0	1	0	0	0	12379	623	22	2	523	2	POU5F2	5	93076803	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	147229	93076803	87838457	289	161472											
FAM172A	83989	broad.mit.edu	37	chr5	93217245	93217245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatagaaatcacgtcgCttctttgtttctttagaaac	5	9	4	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93217245	A	A	93217245	3	1	206	1	0	0	0	0	1	0	0	0	5537	796	28	3	553	3	FAM172A	5	93217245	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	140442	93217245	87698015	290	161473											
GPR150	285601	broad.mit.edu	37	chr5	94956174	94956174	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacaccacagtgctgtgCcgcctgtgcggcggcggcgg	17	14	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94956174	T	T	94956174	2	4	206	1	0	0	0	0	0	0	0	1	6721	747	26	4		4	GPR150	5	94956174	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1738929	94956174	85959086	291	161474											
MAN2A1	4124	broad.mit.edu	37	chr5	109090910	109090910	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtttaaacacattttttgAcaactagtatacatactggt	6	6	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109090910	T	T	109090910	1	4	206	0	1	0	0	0	0	0	0	0	9306	290	10	5		5	MAN2A1	5	109090910	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	14134736	109090910	71824350	292	161475											
WDR36	134430	broad.mit.edu	37	chr5	110456313	110456313	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taattagaaaattgcaaagtAatttttgaggtgtaatatta	7	1	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110456313	T	T	110456313	1	4	206	0	1	0	0	0	0	0	0	0	17417	377	13	5		5	WDR36	5	110456313	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	1365403	110456313	70458947	293	161476											
TSSK1B	83942	broad.mit.edu	37	chr5	112769842	112769842	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcgtgggaagttgacgCggtgctccttctggatacgc	16	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112769842	A	A	112769842	3	1	206	1	0	0	0	0	1	0	0	0	16793	768	27	3	412	3	TSSK1B	5	112769842	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2313529	112769842	68145418	294	161477											
AP3S1	1176	broad.mit.edu	37	chr5	115249134	115249134	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgagatcccaagaaatAttaacattggtgacatcagt	7	8	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115249134	G	G	115249134	3	3	206	1	0	0	0	0	1	0	0	0	751	449	16	5	551	5	AP3S1	5	115249134	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	2479292	115249134	65666126	295	161478											
AQPEP	206338	broad.mit.edu	37	chr5	115351451	115351451	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagtcaacaactggcaagcTgtgagtaaaaggtaagaagg	12	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115351451	A	A	115351451	2	1	206	1	0	0	0	0	0	0	0	1	836	1567	55	5		5	AQPEP	5	115351451	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	102317	115351451	65563809	296	161479											
CSNK1G3	1456	broad.mit.edu	37	chr5	122950054	122950054	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgctgctgttttttcaaAcgaaggaaaaggaaaaccat	10	6	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122950054	C	C	122950054	3	2	206	1	0	0	0	0	1	0	0	0	3990	40	2	5	1382	5	CSNK1G3	5	122950054	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	7598603	122950054	57965206	297	161480											
ADAMTS19	171019	broad.mit.edu	37	chr5	129019893	129019893	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcttccagaaaaccagagCtctaaagcacctgagcccct	6	16	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129019893	A	A	129019893	3	1	206	1	0	0	0	0	1	0	0	0	264	796	28	3	2797	3	ADAMTS19	5	129019893	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	6069839	129019893	51895367	298	161481											
ADAMTS19	171019	broad.mit.edu	37	chr5	129040017	129040017	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtcctctctaccagacCcagggaggctgaagactgtg	13	11	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129040017	T	T	129040017	3	4	206	1	0	0	0	0	1	0	0	0	264	623	22	4	3309	4	ADAMTS19	5	129040017	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	20124	129040017	51875243	299	161482											
KIF3A	11127	broad.mit.edu	37	chr5	132069746	132069746	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaaattttgaggatgaCaagggtgttctaaagctgga	13	3	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132069746	T	T	132069746	1	4	206	0	1	0	0	0	0	0	0	0	8370	493	17	4		4	KIF3A	5	132069746	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3029729	132069746	48845514	300	161483											
NME5	8382	broad.mit.edu	37	chr5	137454515	137454515	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatatttcttaccaaaggatCtgctggtttttgcttacaaa	6	7	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137454515	A	A	137454515	3	1	206	1	0	0	0	0	1	0	0	0	10589	913	32	3	99	3	NME5	5	137454515	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5384769	137454515	43460745	301	161484											
PSD2	84249	broad.mit.edu	37	chr5	139216501	139216501	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtggcaaccccttcctGgatgtcccacaggcgctcag	12	14	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139216501	T	T	139216501	2	4	206	1	0	0	0	0	0	0	0	1	12753	1335	47	2		2	PSD2	5	139216501	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	1761986	139216501	41698759	302	161485											
PCDHA4	56144	broad.mit.edu	37	chr5	140187200	140187200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaagaacctgtccatcgCggaatccaggccgcttgact	9	13	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140187200	A	A	140187200	3	1	206	1	0	0	0	0	1	0	0	0	11620	768	27	3	430	3	PCDHA4	5	140187200	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	970699	140187200	40728060	303	161486											
PCDHA9	9752	broad.mit.edu	37	chr5	140228043	140228043	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttcttctaatttggagGcaattttcactaattagaag	7	5	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140228043	T	T	140228043	1	4	206	0	1	0	0	0	0	0	0	0	11625	1218	42	3		3	PCDHA9	5	140228043	5'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	40843	140228043	40687217	304	161487											
PCDHA12	56137	broad.mit.edu	37	chr5	140257427	140257427	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatcctcccagtgaagtAagttattaatattatttaga	5	5	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140257427	C	C	140257427	1	2	206	0	1	0	0	0	0	0	0	0	11616	349	13	5		5	PCDHA12	5	140257427	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	29384	140257427	40657833	305	161488											
PCDHB16	57717	broad.mit.edu	37	chr5	140562563	140562563	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgattctaaaaataccGgaaaacagtcctctaggaac	7	8	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140562563	T	T	140562563	2	4	206	1	0	0	0	0	0	0	0	1	11635	1103	39	1		1	PCDHB16	5	140562563	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	305136	140562563	40352697	306	161489			1	126		4	4	1087	N	T_G_C	5.888955e-06
PCDHB16	57717	broad.mit.edu	37	chr5	140563280	140563280	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacaatgggaagacgatTtcctccatccaggaagacct	10	10	0	2	rs145408125	byFrequency	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140563280	G	G	140563280	3	3	206	1	0	0	0	0	1	0	0	0	11635	1829	64	5	1148	5	PCDHB16	5	140563280	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	717	140563280	40351980	307	161490			1	126		4	4	1087	N	T_G_C	5.888955e-06
PCDHB16	57717	broad.mit.edu	37	chr5	140563490	140563490	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gataacgcccccactttcacCcaaacctcctacaccctgtt	3	19	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140563490	T	T	140563490	2	4	206	1	0	0	0	0	0	0	0	1	11635	610	22	4		4	PCDHB16	5	140563490	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	210	140563490	40351770	308	161491			1	126		4	4	1087	N	T_G_C	5.888955e-06
PCDHB16	57717	broad.mit.edu	37	chr5	140563649	140563649	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcgcctccctggtctcCatcaacgcagacaacggcca	7	20	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140563649	A	A	140563649	2	1	206	1	0	0	0	0	0	0	0	1	11635	581	21	2		2	PCDHB16	5	140563649	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	159	140563649	40351611	309	161492			1	126		4	4	1087	N	T_G_C	5.888955e-06
PCDHGC5	56097	broad.mit.edu	37	chr5	140871270	140871270	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcgggagcggagccaggtGaggggctcggcgccgccccg	20	14	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140871270	A	A	140871270	1	1	206	0	1	0	0	0	0	0	0	0	11665	1277	45	4		4	PCDHGC5	5	140871270	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	307621	140871270	40043990	310	161493											
IL17B	27190	broad.mit.edu	37	chr5	148758826	148758826	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcctgcagctgctgcccGcctggaaccccagatgccgc	11	18	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148758826	T	T	148758826	1	4	206	0	1	0	0	0	0	0	0	0	7705	1102	38	3		3	IL17B	5	148758826	5'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	7887556	148758826	32156434	311	161494											
PDGFRB	5159	broad.mit.edu	37	chr5	149497145	149497145	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacactgTgcacaatttccttggcccca	4	17	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149497145	C	C	149497145	1	2	206	0	1	0	0	0	0	0	0	0	11756	1711	59	5		5	PDGFRB	5	149497145	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	738319	149497145	31418115	312	161495											
SLC6A7	6534	broad.mit.edu	37	chr5	149580543	149580543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatgaaggccggttcctgGcttgggctacccaaaggctg	15	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149580543	T	T	149580543	1	4	206	0	1	0	0	0	0	0	0	0	14803	1218	42	3		3	SLC6A7	5	149580543	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	83398	149580543	31334717	313	161496											
ZNF300	91975	broad.mit.edu	37	chr5	150275752	150275752	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cactacattcatagggttttTccccagtgtgaactctctga	7	11	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150275752	A	A	150275752	3	1	206	1	0	0	0	0	1	0	0	0	17957	1783	62	5	769	5	ZNF300	5	150275752	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	695209	150275752	30639508	314	161497											
FAT2	2196	broad.mit.edu	37	chr5	150921910	150921910	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcatccagggtctttagagtCgccaccagttcgccaggctc	11	14	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150921910	A	A	150921910	2	1	206	1	0	0	0	0	0	0	0	1	5747	871	31	3		3	FAT2	5	150921910	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	646158	150921910	29993350	315	161498											
NMUR2	56923	broad.mit.edu	37	chr5	151771875	151771875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattggggacctatatcttcGgtcagctccacaaagtggca	10	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151771875	T	T	151771875	2	4	206	1	0	0	0	0	0	0	0	1	10602	1103	39	1		1	NMUR2	5	151771875	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	849965	151771875	29143385	316	161499											
NMUR2	56923	broad.mit.edu	37	chr5	151784290	151784290	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggatggaggcgaagcacaCggtctcaaagagggccgtct	16	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151784290	G	G	151784290	3	3	206	1	0	0	0	0	1	0	0	0	10602	536	19	4	878	4	NMUR2	5	151784290	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	12415	151784290	29130970	317	161500											
KIF4B	285643	broad.mit.edu	37	chr5	154395531	154395531	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgctcagacgtaaaacGgaagaggcagcagctgccaa	13	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154395531	T	T	154395531	2	4	206	1	0	0	0	0	0	0	0	1	8374	1103	39	1		1	KIF4B	5	154395531	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	2611241	154395531	26519729	318	161501											
CYFIP2	26999	broad.mit.edu	37	chr5	156747733	156747733	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccccctaatgacccatgcTtgagaggggagaaggacccc	12	13	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156747733	G	G	156747733	3	3	206	1	0	0	0	0	1	0	0	0	4171	1606	56	5	1648	5	CYFIP2	5	156747733	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	2352202	156747733	24167527	319	161502											
C1QTNF2	114898	broad.mit.edu	37	chr5	159781811	159781811	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccggtcgccgtcgtgtcCatcttggccgtctttgccag	11	17	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159781811	G	G	159781811	3	3	206	1	0	0	0	0	1	0	0	0	1983	603	21	4	657	4	C1QTNF2	5	159781811	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3034078	159781811	21133449	320	161503											
GABRA1	2554	broad.mit.edu	37	chr5	161302634	161302634	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatgcccatgcttgcccacTaaaatttggaagttgtgagt	11	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161302634	A	A	161302634	3	1	206	1	0	0	0	0	1	0	0	0	6220	1522	53	5	563	5	GABRA1	5	161302634	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1520823	161302634	19612626	321	161504											
GABRG2	2566	broad.mit.edu	37	chr5	161576210	161576210	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcgatggatctctttgtatCtgtttgtttcatctttgtct	8	7	5	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161576210	A	A	161576210	3	1	206	1	0	0	0	0	1	0	0	0	6232	913	32	3	1173	3	GABRG2	5	161576210	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	273576	161576210	19339050	322	161505											
ODZ2	57451	broad.mit.edu	37	chr5	167489128	167489128	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaagttggtcggcgggtaaCacaagaagtcccaccagggg	15	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167489128	G	G	167489128	3	3	206	1	0	0	0	0	1	0	0	0	10930	478	17	4	1399	4	ODZ2	5	167489128	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5912918	167489128	13426132	323	161506											
ODZ2	57451	broad.mit.edu	37	chr5	167671759	167671759	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgacagcaagggctttctGttatttctgttattccggct	9	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167671759	A	A	167671759	1	1	206	0	1	0	0	0	0	0	0	0	10930	1392	48	4		4	ODZ2	5	167671759	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	182631	167671759	13243501	324	161507											
SLIT3	6586	broad.mit.edu	37	chr5	168175165	168175166	+	Intron	DNP	CC	AA	AA													tcttggtgagggctccactgCcatcttgctgggatccattc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	168175166	AA	AA	168175165	1	1	206	0	1	0	0	0	0	0	0	0	14855	754	26	3		3	SLIT3	5	168175165	Intron	DNP	CC	TCGA-73-4666-01A-01D-1265-08	503406	168175165	12740095	325	161508											
DOCK2	1794	broad.mit.edu	37	chr5	169098042	169098042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatcttgttagcacctgGgtctcaatttcacaccactt	5	11	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169098042	T	T	169098042	1	4	206	0	1	0	0	0	0	0	0	0	4727	1247	43	2		2	DOCK2	5	169098042	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	922877	169098042	11817218	326	161509											
DOCK2	1794	broad.mit.edu	37	chr5	169469116	169469116	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctctacgagaccatcataGgctactttgacaaaggaaag	9	10	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169469116	A	A	169469116	3	1	206	1	0	0	0	0	1	0	0	0	4727	1000	35	4	4006	4	DOCK2	5	169469116	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	371074	169469116	11446144	327	161510											
RANBP17	64901	broad.mit.edu	37	chr5	170305133	170305133	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaagtgttatgtactcaTctctacatagggactgatct	9	7	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170305133	C	C	170305133	2	2	206	1	0	0	0	0	0	0	0	1	13135	1432	50	5		5	RANBP17	5	170305133	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	836017	170305133	10610127	328	161511											
FAM153B	202134	broad.mit.edu	37	chr5	175528024	175528024	+	Intron	SNP	G	T	T													attcactcagtggagctcatGtgcttatagcgactctgttt							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175528024	T	T	175528024	1	4	206	0	1	0	0	0	0	0	0	0	5507	1392	48	3		3	FAM153B	5	175528024	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	5222891	175528024	5387236	329	161512	683	2									
FAM153B	202134	broad.mit.edu	37	chr5	175528026	175528026	+	Intron	SNP	G	T	T													tcactcagtggagctcatgtGcttatagcgactctgtttcc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175528026	T	T	175528026	1	4	206	0	1	0	0	0	0	0	0	0	5507	1334	46	3		3	FAM153B	5	175528026	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2	175528026	5387234	330	161513	683	2									
GPRIN1	114787	broad.mit.edu	37	chr5	176026654	176026654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcctgggctttggtcaGgggtgtgcctggggggtgca	19	9	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176026654	T	T	176026654	3	4	206	1	0	0	0	0	1	0	0	0	6795	1000	35	2	2848	2	GPRIN1	5	176026654	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	498628	176026654	4888606	331	161514											
DBN1	1627	broad.mit.edu	37	chr5	176885479	176885479	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagtgtcagtttcaatGgtgtcagctgcatcgtggat	14	7	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176885479	A	A	176885479	2	1	206	1	0	0	0	0	0	0	0	1	4285	1335	47	4		4	DBN1	5	176885479	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	858825	176885479	4029781	332	161515											
ZNF354C	30832	broad.mit.edu	37	chr5	178506304	178506304	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcaacccttatcaaacatCtgagagtgcatactggagag	9	9	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178506304	T	T	178506304	2	4	206	1	0	0	0	0	0	0	0	1	17992	912	32	4		4	ZNF354C	5	178506304	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1620825	178506304	2408956	333	161516											
CANX	821	broad.mit.edu	37	chr5	179137146	179137146	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagattgtatatctggccGggcactgtggctcacgcctg	12	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179137146	T	T	179137146	1	4	206	0	1	0	0	0	0	0	0	0	2644	1131	39	1		1	CANX	5	179137146	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	630842	179137146	1778114	334	161517											
TRIM41	90933	broad.mit.edu	37	chr5	180659677	180659677	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccagatgaagtcagagCtggcagcggtggcctcggag	17	9	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180659677	T	T	180659677	2	4	206	1	0	0	0	0	0	0	0	1	16640	796	28	4		4	TRIM41	5	180659677	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1522531	180659677	255583	335	161518											
E2F3	1871	broad.mit.edu	37	chr6	20490840	20490840	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaaattaataaacaaAttgtctaaacgcacagttgc	4	6	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20490840	G	G	20490840	1	3	206	0	1	0	0	0	0	0	0	0	4908	116	4	5		5	E2F3	6	20490840	3'UTR	SNP	A	TCGA-73-4666-01A-01D-1265-08		20490840	150624227	336	161519											
VARS	7407	broad.mit.edu	37	chr6	31747922	31747922	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtccaccaggctctcatgGcctccgggcttggggagaga	15	13	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31747922	A	A	31747922	2	1	206	1	0	0	0	0	0	0	0	1	17250	1190	42	4		4	VARS	6	31747922	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	11257082	31747922	139367145	337	161520											
TNXB	7148	broad.mit.edu	37	chr6	32024798	32024798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgatgctgcccacagccCctccagcacagctcttcatc	8	18	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32024798	A	A	32024798	1	1	206	0	1	0	0	0	0	0	0	0	16469	638	22	2		2	TNXB	6	32024798	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	276876	32024798	139090269	338	161521											
HSD17B8	7923	broad.mit.edu	37	chr6	33173527	33173527	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagatgcttgagggtgctGgggagcacctggggggtctg	20	7	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33173527	T	T	33173527	1	4	206	0	1	0	0	0	0	0	0	0	7456	1363	47	2		2	HSD17B8	6	33173527	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1148729	33173527	137941540	339	161522											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34824242	34824242	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcctcttgccatttatcttTgaataacagtggagataaag	8	7	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34824242	A	A	34824242	1	1	206	0	1	0	0	0	0	0	0	0	17094	1827	63	5		5	UHRF1BP1	6	34824242	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	1650715	34824242	136290825	340	161523											
ANKS1A	23294	broad.mit.edu	37	chr6	34985812	34985812	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggctagagaagtcaccCtccttcgcctcggagtggga	12	11	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34985812	A	A	34985812	2	1	206	1	0	0	0	0	0	0	0	1	688	668	24	2		2	ANKS1A	6	34985812	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	161570	34985812	136129255	341	161524											
DEF6	50619	broad.mit.edu	37	chr6	35278556	35278556	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttcccatgctggtatctGtcctcacccagctgtctcca	6	16	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35278556	A	A	35278556	1	1	206	0	1	0	0	0	0	0	0	0	4419	1392	48	4		4	DEF6	6	35278556	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	292744	35278556	135836511	342	161525											
CPNE5	57699	broad.mit.edu	37	chr6	36711249	36711249	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgggcacccgcaatgttagGagtgtgtcccagatgtgaca	13	10	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36711249	A	A	36711249	1	1	206	0	1	0	0	0	0	0	0	0	3847	1189	41	4		4	CPNE5	6	36711249	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1432693	36711249	134403818	343	161526											
CPNE5	57699	broad.mit.edu	37	chr6	36711440	36711440	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggggctcttgaatttcccaTggggcaggcaaggcctgggc	16	10	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36711440	A	A	36711440	1	1	206	0	1	0	0	0	0	0	0	0	3847	1479	51	5		5	CPNE5	6	36711440	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	191	36711440	134403627	344	161527											
MOCS1	4337	broad.mit.edu	37	chr6	39879821	39879821	+	Intron	DEL	C	-	-													aaggaatcagggtgacatttCcagaggggccatgagttcac							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39879821	-	-	39879821	6	5	206	0	1	1	0	1	0	0	0	0	9784	870	30	0		0	MOCS1	6	39879821	Intron	DEL	C	TCGA-73-4666-01A-01D-1265-08	3168381	39879821	131235246	345	161528											
DEFB112	245915	broad.mit.edu	37	chr6	50016286	50016286	+	Frame_Shift_Del	DEL	C	-	-													tgtcccatgtcgggccttttCaaatattgtggaagatgtat							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50016286	-	-	50016286	7	5	206	1	0	1	0	1	0	0	0	0	4440	835	29	0	269	0	DEFB112	6	50016286	Frame_Shift_Del	DEL	C	TCGA-73-4666-01A-01D-1265-08	10136465	50016286	121098781	346	161529											
PKHD1	5314	broad.mit.edu	37	chr6	51936893	51936893	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacaagcatgtgcattggCaagataataagacactcacc	7	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51936893	A	A	51936893	1	1	206	0	1	0	0	0	0	0	0	0	12066	725	25	3		3	PKHD1	6	51936893	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1920607	51936893	119178174	347	161530											
GCLC	2729	broad.mit.edu	37	chr6	53372308	53372311	+	Frame_Shift_Del	DEL	TATC	-	-													cagctgttcgtagatctcttTatctatcgtcaagtcgatgt							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53372311	-	-	53372308	7	5	206	1	0	1	0	1	0	0	0	0	6357	1763	61	0	891	0	GCLC	6	53372308	Frame_Shift_Del	DEL	TATC	TCGA-73-4666-01A-01D-1265-08	1435415	53372308	117742759	348	161531											
KLHL31	401265	broad.mit.edu	37	chr6	53516934	53516934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgctagcgtggcagcagCgcgccacctccaggggcgtc	15	17	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53516934	A	A	53516934	3	1	206	1	0	0	0	0	1	0	0	0	8456	768	27	3	541	3	KLHL31	6	53516934	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	144626	53516934	117598133	349	161532											
DST	667	broad.mit.edu	37	chr6	56391558	56391558	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaaagaaaaatgtttcctGagaagttcaaagaacaattc	6	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56391558	C	C	56391558	1	2	206	0	1	0	0	0	0	0	0	0	4823	1305	45	4		4	DST	6	56391558	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2874624	56391558	114723509	350	161533											
MDN1	23195	broad.mit.edu	37	chr6	90356446	90356446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacctcaggtttacagaccAtcaactaactgtcccttctg	5	15	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90356446	G	G	90356446	1	3	206	0	1	0	0	0	0	0	0	0	9508	232	8	5		5	MDN1	6	90356446	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	33964888	90356446	80758621	351	161534											
CD164	8763	broad.mit.edu	37	chr6	109698925	109698925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatagctaaatcactaaacCaagcttcaaatatcatcctt	2	11	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109698925	A	A	109698925	1	1	206	0	1	0	0	0	0	0	0	0	2999	609	21	2		2	CD164	6	109698925	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	19342479	109698925	61416142	352	161535											
FIG4	9896	broad.mit.edu	37	chr6	110083281	110083281	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcacttttctcattcttcCttctctcctcagcaagctgt	3	15	5	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110083281	T	T	110083281	1	4	206	0	1	0	0	0	0	0	0	0	5945	696	24	4		4	FIG4	6	110083281	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	384356	110083281	61031786	353	161536											
DDO	8528	broad.mit.edu	37	chr6	110714065	110714065	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagagcagtgccccagtgCactgagatgcccccactccc	9	18	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110714065	A	A	110714065	2	1	206	1	0	0	0	0	0	0	0	1	4367	697	25	3		3	DDO	6	110714065	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	630784	110714065	60401002	354	161537											
C6orf170	221322	broad.mit.edu	37	chr6	121401997	121401997	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccaaaatttccatgtattCaaaataatcactcactcgaa	2	10	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121401997	G	G	121401997	3	3	206	1	0	0	0	0	1	0	0	0	2367	835	29	4	83	4	C6orf170	6	121401997	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	10687932	121401997	49713070	355	161538											
C6orf170	221322	broad.mit.edu	37	chr6	121577441	121577441	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctgtaggactaaaagatGatacctgaaagtgattccaa	8	8	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121577441	A	A	121577441	1	1	206	0	1	0	0	0	0	0	0	0	2367	1305	45	4		4	C6orf170	6	121577441	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	175444	121577441	49537626	356	161539											
TAAR5	9038	broad.mit.edu	37	chr6	132909856	132909856	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgtctgcggtgagaagaCcttctggctcagtgtgagtt	15	8	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132909856	G	G	132909856	3	3	206	1	0	0	0	0	1	0	0	0	15610	507	18	4	47	4	TAAR5	6	132909856	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	11332415	132909856	38205211	357	161540											
SASH1	23328	broad.mit.edu	37	chr6	148664387	148664387	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctggggagggggcggcgcAggaagtacagttcgcagcag	19	9	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148664387	G	G	148664387	1	3	206	0	1	0	0	0	0	0	0	0	13960	203	7	5		5	SASH1	6	148664387	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	15754531	148664387	22450680	358	161541											
ACAT2	39	broad.mit.edu	37	chr6	160199279	160199279	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcagctgtctctgctgcAatagttaaagaacttggatt	9	7	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160199279	G	G	160199279	2	3	206	1	0	0	0	0	0	0	0	1	122	117	5	5		5	ACAT2	6	160199279	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	11534892	160199279	10915788	359	161542											
LPA	4018	broad.mit.edu	37	chr6	161016486	161016486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcaggttgcagtactcCcacctgacactgggatccat	10	12	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161016486	A	A	161016486	3	1	206	1	0	0	0	0	1	0	0	0	8990	624	22	2	2829	2	LPA	6	161016486	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	817207	161016486	10098581	360	161543											
MAP3K4	4216	broad.mit.edu	37	chr6	161510315	161510315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaataacaactagtaactGggttggtttttatgtcctgt	9	5	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161510315	T	T	161510315	1	4	206	0	1	0	0	0	0	0	0	0	9344	1363	47	2		2	MAP3K4	6	161510315	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	493829	161510315	9604752	361	161544											
SMOC2	64094	broad.mit.edu	37	chr6	168999493	168999493	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttgccttcttcttcccCgcagtgtcatcctgtgacca	6	16	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168999493	A	A	168999493	1	1	206	0	1	0	0	0	0	0	0	0	14916	667	23	1		1	SMOC2	6	168999493	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	7489178	168999493	2115574	362	161545											
SDK1	221935	broad.mit.edu	37	chr7	4008919	4008919	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggccagtggctctgtccGgattcctaggttcatgcttc	11	12	3	0	rs144938504		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4008919	T	T	4008919	3	4	206	1	0	0	0	0	1	0	0	0	14081	1116	39	1	1619	1	SDK1	7	4008919	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08		4008919	155129744	363	161546											
RADIL	55698	broad.mit.edu	37	chr7	4876112	4876112	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcagggcgttcactgggctCaggctggtctcactgactgt	15	11	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4876112	A	A	4876112	2	1	206	1	0	0	0	0	0	0	0	1	13105	813	29	3		3	RADIL	7	4876112	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	867193	4876112	154262551	364	161547											
PAPOLB	56903	broad.mit.edu	37	chr7	4900849	4900849	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccattaaggcttcttatgCatctaatgtctaaattttta	4	7	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4900849	A	A	4900849	3	1	206	1	0	0	0	0	1	0	0	0	11524	710	25	3	1324	3	PAPOLB	7	4900849	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	24737	4900849	154237814	365	161548											
OCM	654231	broad.mit.edu	37	chr7	5925612	5925612	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttctttgcttccttccctCtttggaattctcattggcca	5	12	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5925612	G	G	5925612	1	3	206	0	1	0	0	0	0	0	0	0	10916	928	32	4		4	OCM	7	5925612	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1024763	5925612	153213051	366	161549											
THSD7A	221981	broad.mit.edu	37	chr7	11500226	11500226	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtgtccaagtggcaaatGcatcaaaacagtagttaaac	9	7	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11500226	A	A	11500226	1	1	206	0	1	0	0	0	0	0	0	0	16002	1334	46	4		4	THSD7A	7	11500226	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	5574614	11500226	147638437	367	161550											
THSD7A	221981	broad.mit.edu	37	chr7	11501699	11501699	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcatagaggggatctgtgcAgtctcggcccccgttggctg	14	11	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11501699	T	T	11501699	3	4	206	1	0	0	0	0	1	0	0	0	16002	188	7	5	2605	5	THSD7A	7	11501699	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1473	11501699	147636964	368	161551											
HDAC9	9734	broad.mit.edu	37	chr7	18869106	18869106	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttctgcttttttaattcaGttgcaattaccgccaaatac	6	9	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18869106	T	T	18869106	3	4	206	1	0	0	0	0	1	0	0	0	7081	1029	36	3	2522	3	HDAC9	7	18869106	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	7367407	18869106	140269557	369	161552											
HDAC9	9734	broad.mit.edu	37	chr7	18975281	18975281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagagataataataggacCtaatccataaagttatttta	5	4	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18975281	A	A	18975281	1	1	206	0	1	0	0	0	0	0	0	0	7081	696	24	2		2	HDAC9	7	18975281	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	106175	18975281	140163382	370	161553											
MACC1	346389	broad.mit.edu	37	chr7	20198853	20198853	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactgggatggatatatttGggtccataaattccaattga	9	5	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20198853	A	A	20198853	2	1	206	1	0	0	0	0	0	0	0	1	9231	1335	47	4		4	MACC1	7	20198853	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	1223572	20198853	138939810	371	161554											
PDE1C	5137	broad.mit.edu	37	chr7	31862586	31862586	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taatattcggcaatttgaatCtgcatcctgagcaactgtgc	8	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31862586	A	A	31862586	1	1	206	0	1	0	0	0	0	0	0	0	11729	928	32	3		3	PDE1C	7	31862586	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	11663733	31862586	127276077	372	161555											
KBTBD2	25948	broad.mit.edu	37	chr7	32910171	32910171	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtgcatcaattctgaTttggctaagaacagaagaca	9	6	2	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32910171	C	C	32910171	3	2	206	1	0	0	0	0	1	0	0	0	8063	1493	52	5	1217	5	KBTBD2	7	32910171	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1047585	32910171	126228492	373	161556											
BBS9	27241	broad.mit.edu	37	chr7	33316611	33316611	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggtggagactccatggcaGacttggcaggtgatgtccaa	15	8	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33316611	T	T	33316611	1	4	206	0	1	0	0	0	0	0	0	0	1347	957	33	3		3	BBS9	7	33316611	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	406440	33316611	125822052	374	161557											
BMPER	168667	broad.mit.edu	37	chr7	33976923	33976923	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaggaagtgacatgtaagaGagagaagtgccccgtgctgt	14	7	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33976923	T	T	33976923	3	4	206	1	0	0	0	0	1	0	0	0	1474	942	33	3	252	3	BMPER	7	33976923	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	660312	33976923	125161740	375	161558											
NPSR1	387129	broad.mit.edu	37	chr7	34818138	34818138	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgattcactggagacttcacGgcacctgacctggtttgccg	11	13	2	2	rs324982	byFrequency;by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34818138	T	T	34818138	2	4	206	1	0	0	0	0	0	0	0	1	10695	1103	39	1		1	NPSR1	7	34818138	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	841215	34818138	124320525	376	161559											
SPDYE1	285955	broad.mit.edu	37	chr7	44047193	44047193	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagttggaggaggtgagtgGggcctggggaggtggaggag	26	2	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44047193	A	A	44047193	1	1	206	0	1	0	0	0	0	0	0	0	15145	1247	43	4		4	SPDYE1	7	44047193	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	9229055	44047193	115091470	377	161560											
OGDH	4967	broad.mit.edu	37	chr7	44739898	44739898	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agggcctcccttgctcaaacGaggcctggccctgccctgtt	11	16	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44739898	T	T	44739898	1	4	206	0	1	0	0	0	0	0	0	0	10934	1073	37	3		3	OGDH	7	44739898	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	692705	44739898	114398765	378	161561											
PKD1L1	168507	broad.mit.edu	37	chr7	47930059	47930059	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaactgcttgctgtgcacaGcagattcctttcacggatgc	9	12	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47930059	A	A	47930059	1	1	206	0	1	0	0	0	0	0	0	0	12059	986	34	4		4	PKD1L1	7	47930059	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3190161	47930059	111208604	379	161562											
SUN3	256979	broad.mit.edu	37	chr7	48026922	48026922	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcatggccttctgtaccaaCtcttctagatgtgcttgcct	9	12	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48026922	G	G	48026922	1	3	206	0	1	0	0	0	0	0	0	0	15511	580	20	4		4	SUN3	7	48026922	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	96863	48026922	111111741	380	161563											
ABCA13	154664	broad.mit.edu	37	chr7	48311611	48311611	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatttaaaaagtttaaagaGagacccatctgccactgatg	7	8	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48311611	C	C	48311611	3	2	206	1	0	0	0	0	1	0	0	0	31	942	33	4	2243	4	ABCA13	7	48311611	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	284689	48311611	110827052	381	161564											
ABCA13	154664	broad.mit.edu	37	chr7	48684387	48684387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcaggaggttgaattttGgtctgttcatcagacctaat	10	6	4	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48684387	T	T	48684387	1	4	206	0	1	0	0	0	0	0	0	0	31	1363	47	2		2	ABCA13	7	48684387	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	372776	48684387	110454276	382	161565											
COBL	23242	broad.mit.edu	37	chr7	51258590	51258590	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcctttatcccgagctcGttcagggacttggacagctc	10	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51258590	A	A	51258590	2	1	206	1	0	0	0	0	0	0	0	1	3685	1136	40	4		4	COBL	7	51258590	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	2574203	51258590	107880073	383	161566											
ZNF716	441234	broad.mit.edu	37	chr7	57528933	57528933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttagctggtctgcatccCttactaaacataagagaatt	6	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57528933	A	A	57528933	3	1	206	1	0	0	0	0	1	0	0	0	18247	681	24	2	780	2	ZNF716	7	57528933	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	6270343	57528933	101609730	384	161567											
RABGEF1	27342	broad.mit.edu	37	chr7	66274076	66274076	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgaacgacaagaaaggatCatgaatgaagccaagaaact	9	6	1	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66274076	T	T	66274076	2	4	206	1	0	0	0	0	0	0	0	1	13074	816	29	4		4	RABGEF1	7	66274076	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	8745143	66274076	92864587	385	161568											
LAT2	7462	broad.mit.edu	37	chr7	73636006	73636006	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattacaactgggggcggttCtcgaagcccccagaaggtga	13	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73636006	G	G	73636006	3	3	206	1	0	0	0	0	1	0	0	0	8717	912	32	4	402	4	LAT2	7	73636006	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	7361930	73636006	85502657	386	161569											
PTPN12	5782	broad.mit.edu	37	chr7	77255932	77255932	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgcaaccagattgtaatggCtcttaatatgctactcttag	7	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77255932	G	G	77255932	1	3	206	0	1	0	0	0	0	0	0	0	12887	812	28	4		4	PTPN12	7	77255932	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3619926	77255932	81882731	387	161570											
CACNA2D1	781	broad.mit.edu	37	chr7	81588571	81588571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatttatagtattttaatcCagtagaagtgtgatcttacc	6	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81588571	A	A	81588571	1	1	206	0	1	0	0	0	0	0	0	0	2574	609	21	2		2	CACNA2D1	7	81588571	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	4332639	81588571	77550092	388	161571											
CACNA2D1	781	broad.mit.edu	37	chr7	81595047	81595047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgcattgtctttaccCcattatatacatgattagag	8	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81595047	A	A	81595047	1	1	206	0	1	0	0	0	0	0	0	0	2574	638	22	2		2	CACNA2D1	7	81595047	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	6476	81595047	77543616	389	161572											
CACNA2D1	781	broad.mit.edu	37	chr7	81643697	81643697	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttttcttctaatttattaGaagaaaacagatttgttacc	5	5	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81643697	C	C	81643697	1	2	206	0	1	0	0	0	0	0	0	0	2574	957	33	4		4	CACNA2D1	7	81643697	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	48650	81643697	77494966	390	161573											
KIAA1324L	222223	broad.mit.edu	37	chr7	86554801	86554801	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttcaagaatgaatgatgtCtctattgctgaaatacatca	7	6	3	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86554801	A	A	86554801	1	1	206	0	1	0	0	0	0	0	0	0	8294	928	32	3		3	KIAA1324L	7	86554801	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	4911104	86554801	72583862	391	161574											
ABCB4	5244	broad.mit.edu	37	chr7	87031578	87031578	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagcaatcacaatgcagGtgcggccttctctggctttg	13	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87031578	T	T	87031578	3	4	206	1	0	0	0	0	1	0	0	0	43	1261	44	3	169	3	ABCB4	7	87031578	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	476777	87031578	72107085	392	161575											
STEAP1	26872	broad.mit.edu	37	chr7	89793755	89793755	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggatgggataaactcttattGaaccaatcttcaccaatttt	6	8	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89793755	T	T	89793755	1	4	206	0	1	0	0	0	0	0	0	0	15395	1305	45	3		3	STEAP1	7	89793755	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2762177	89793755	69344908	393	161576											
CDK6	1021	broad.mit.edu	37	chr7	92404042	92404042	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgggcactccaggctctgGaactttatccaagtaagtgg	12	9	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92404042	T	T	92404042	3	4	206	1	0	0	0	0	1	0	0	0	3178	1174	41	3	667	3	CDK6	7	92404042	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	2610287	92404042	66734621	394	161577											
DYNC1I1	1780	broad.mit.edu	37	chr7	95457504	95457504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgctggagctgttgttGctcttgtgttctcccctttt	10	9	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95457504	T	T	95457504	1	4	206	0	1	0	0	0	0	0	0	0	4882	1334	46	3		3	DYNC1I1	7	95457504	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3053462	95457504	63681159	395	161578											
DYNC1I1	1780	broad.mit.edu	37	chr7	95614096	95614096	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactttttcttccctaacaAtctcttttacaaaaaaataa	0	10	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95614096	T	T	95614096	1	4	206	0	1	0	0	0	0	0	0	0	4882	116	4	5		5	DYNC1I1	7	95614096	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	156592	95614096	63524567	396	161579											
GPC2	221914	broad.mit.edu	37	chr7	99771579	99771579	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggcacaggggacagccgatGagacgcatcagagcctggct	15	12	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99771579	A	A	99771579	2	1	206	1	0	0	0	0	0	0	0	1	6663	1277	45	4		4	GPC2	7	99771579	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	4157483	99771579	59367084	397	161580											
FBXO24	26261	broad.mit.edu	37	chr7	100190686	100190686	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaactgtttcctgcagattCctcagaccctgctgcagagg	9	13	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100190686	T	T	100190686	1	4	206	0	1	0	0	0	0	0	0	0	5792	870	30	4		4	FBXO24	7	100190686	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	419107	100190686	58947977	398	161581											
ZAN	7455	broad.mit.edu	37	chr7	100349490	100349490	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaagcccacagtccccAaagaaaagcccaccattccc	5	17	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100349490	G	G	100349490	3	3	206	1	0	0	0	0	1	0	0	0	17640	131	5	5	1812	5	ZAN	7	100349490	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	158804	100349490	58789173	399	161582											
SRRT	51593	broad.mit.edu	37	chr7	100481571	100481571	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttaatctctctattttgaTgaccttttgtggttgtgaga	8	7	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100481571	A	A	100481571	1	1	206	0	1	0	0	0	0	0	0	0	15290	1479	51	5		5	SRRT	7	100481571	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	132081	100481571	58657092	400	161583											
MOGAT3	346606	broad.mit.edu	37	chr7	100843988	100843988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctccaagccctactcccCtggcagaccccaggcaccca	6	22	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100843988	A	A	100843988	1	1	206	0	1	0	0	0	0	0	0	0	9790	696	24	2		2	MOGAT3	7	100843988	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	362417	100843988	58294675	401	161584											
PLOD3	8985	broad.mit.edu	37	chr7	100849495	100849495	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacccatcccccaactcCcaggacgggggccaggcccc	11	19	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100849495	A	A	100849495	1	1	206	0	1	0	0	0	0	0	0	0	12198	638	22	2		2	PLOD3	7	100849495	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	5507	100849495	58289168	402	161585											
PLOD3	8985	broad.mit.edu	37	chr7	100853847	100853847	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttacagaaggccatgtccGggtctgtgtcactgcccgag	12	12	3	1	rs145508748	byFrequency	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100853847	A	A	100853847	3	1	206	1	0	0	0	0	1	0	0	0	12198	1116	39	4	778	4	PLOD3	7	100853847	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	4352	100853847	58284816	403	161586											
RELN	5649	broad.mit.edu	37	chr7	103181032	103181032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcgatttaatgagtgtcCaaagcaatcacttcaaagtc	8	8	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103181032	A	A	103181032	1	1	206	0	1	0	0	0	0	0	0	0	13328	609	21	2		2	RELN	7	103181032	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2327185	103181032	55957631	404	161587											
RELN	5649	broad.mit.edu	37	chr7	103205892	103205892	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaatactggagctgtacActgtgggagttgctgaaggg	16	5	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103205892	C	C	103205892	3	2	206	1	0	0	0	0	1	0	0	0	13328	156	6	5	5467	5	RELN	7	103205892	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	24860	103205892	55932771	405	161588											
RELN	5649	broad.mit.edu	37	chr7	103212657	103212657	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctagttcttggtttgatgCaggtaatgcctgaagttttg	11	5	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103212657	A	A	103212657	3	1	206	1	0	0	0	0	1	0	0	0	13328	710	25	3	5960	3	RELN	7	103212657	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	6765	103212657	55926006	406	161589											
LAMB4	22798	broad.mit.edu	37	chr7	107698409	107698409	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgaggaattgacaagtTttatggtctaaaaaaaaatg	11	2	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107698409	G	G	107698409	1	3	206	0	1	0	0	0	0	0	0	0	8685	1856	64	5		5	LAMB4	7	107698409	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	4485752	107698409	51440254	407	161590											
NRCAM	4897	broad.mit.edu	37	chr7	107880322	107880322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcacacagacaccttctcCattcacgcagttcagagtga	6	13	4	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107880322	A	A	107880322	1	1	206	0	1	0	0	0	0	0	0	0	10739	609	21	2		2	NRCAM	7	107880322	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	181913	107880322	51258341	408	161591											
PPP1R3A	5506	broad.mit.edu	37	chr7	113558901	113558901	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggggtatccaggtatatgtCttcagaagaatcagaacctc	10	8	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113558901	A	A	113558901	3	1	206	1	0	0	0	0	1	0	0	0	12472	913	32	3	3233	3	PPP1R3A	7	113558901	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5678579	113558901	45579762	409	161592											
PTPRZ1	5803	broad.mit.edu	37	chr7	121680905	121680905	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agacccagtggacgtgtggtCacacagtatcactacacgca	10	12	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121680905	A	A	121680905	2	1	206	1	0	0	0	0	0	0	0	1	12922	813	29	3		3	PTPRZ1	7	121680905	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	8122004	121680905	37457758	410	161593											
ASB15	142685	broad.mit.edu	37	chr7	123267082	123267082	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgtgagccaccatgccCagccccacaacaggctgttt	10	15	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123267082	T	T	123267082	1	4	206	0	1	0	0	0	0	0	0	0	1023	609	21	4		4	ASB15	7	123267082	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1586177	123267082	35871581	411	161594											
ASB15	142685	broad.mit.edu	37	chr7	123269175	123269175	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctgcaggtgcagaccCaaacttagatcccctcaact	8	14	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123269175	A	A	123269175	3	1	206	1	0	0	0	0	1	0	0	0	1023	594	21	2	1153	2	ASB15	7	123269175	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2093	123269175	35869488	412	161595											
ZC3HC1	51530	broad.mit.edu	37	chr7	129690962	129690962	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagccatccccactgcccGagtcgccgaccgaggggaac	12	16	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129690962	A	A	129690962	1	1	206	0	1	0	0	0	0	0	0	0	17703	1073	37	4		4	ZC3HC1	7	129690962	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	6421787	129690962	29447701	413	161596											
COPG2	26958	broad.mit.edu	37	chr7	130150671	130150671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggagaggatgacgaaatGgggcgaggaggcaagatgcg	20	5	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130150671	T	T	130150671	1	4	206	0	1	0	0	0	0	0	0	0	3764	1363	47	2		2	COPG2	7	130150671	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	459709	130150671	28987992	414	161597											
PLXNA4	91584	broad.mit.edu	37	chr7	131925827	131925827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccatggtactcacgtGttgtgcagcacacaccagcc	8	17	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131925827	T	T	131925827	3	4	206	1	0	0	0	0	1	0	0	0	12217	1368	48	3	4194	3	PLXNA4	7	131925827	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1775156	131925827	27212836	415	161598											
TRIM24	8805	broad.mit.edu	37	chr7	138235802	138235802	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagttatctctcctttttcTtctagattacataccggtta	4	9	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138235802	A	A	138235802	1	1	206	0	1	0	0	0	0	0	0	0	16622	1624	56	5		5	TRIM24	7	138235802	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	6309975	138235802	20902861	416	161599											
MGAM	8972	broad.mit.edu	37	chr7	141759640	141759640	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggttttcccaactgactTatgctttgatttcaggatcc	7	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141759640	A	A	141759640	1	1	206	0	1	0	0	0	0	0	0	0	9634	1769	61	5		5	MGAM	7	141759640	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	3523838	141759640	17379023	417	161600											
MGAM	8972	broad.mit.edu	37	chr7	141762468	141762468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacaacaatccacagaatcCagagaggagcttgaagtttg	9	8	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141762468	A	A	141762468	3	1	206	1	0	0	0	0	1	0	0	0	9634	594	21	2	4357	2	MGAM	7	141762468	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2828	141762468	17376195	418	161601											
TRPV5	56302	broad.mit.edu	37	chr7	142626676	142626676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctggcccagagacagCcatcatcagggtctccctct	9	16	4	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142626676	A	A	142626676	1	1	206	0	1	0	0	0	0	0	0	0	16724	754	26	3		3	TRPV5	7	142626676	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	864208	142626676	16511987	419	161602											
KEL	3792	broad.mit.edu	37	chr7	142659392	142659392	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accccccgccccagttccttGatcctggagaaggggcactt	10	16	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142659392	A	A	142659392	1	1	206	0	1	0	0	0	0	0	0	0	8212	1305	45	4		4	KEL	7	142659392	5'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	32716	142659392	16479271	420	161603											
CASP2	835	broad.mit.edu	37	chr7	142985564	142985564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaatggcggcgccgagcGcggggtcttggtccaccttc	17	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142985564	T	T	142985564	3	4	206	1	0	0	0	0	1	0	0	0	2697	1087	38	3	18	3	CASP2	7	142985564	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	326172	142985564	16153099	421	161604											
MLL3	58508	broad.mit.edu	37	chr7	151891258	151891259	+	Intron	DNP	GG	AT	AT													acaagattaaaagactagtaGggtcctggtatggggaacgc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	151891259	AT	AT	151891258	1	1	206	0	1	0	0	0	0	0	0	0	9715	1015	35	4		4	MLL3	7	151891258	Intron	DNP	GG	TCGA-73-4666-01A-01D-1265-08	8905694	151891258	7247405	422	161605											
HTR5A	3361	broad.mit.edu	37	chr7	154862900	154862900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctggtcatgccgctgagCctggtgcacgagctgtccgg	16	13	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154862900	A	A	154862900	3	1	206	1	0	0	0	0	1	0	0	0	7520	738	26	3	293	3	HTR5A	7	154862900	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2971642	154862900	4275763	423	161606											
NOM1	64434	broad.mit.edu	37	chr7	156752721	156752721	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgattggaactttcacCgaaaaagatattgaactgat	7	6	1	4	rs143153161		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156752721	A	A	156752721	2	1	206	1	0	0	0	0	0	0	0	1	10625	639	23	1		1	NOM1	7	156752721	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1889821	156752721	2385942	424	161607											
PTPRN2	5799	broad.mit.edu	37	chr7	157366930	157366930	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaccaacccaggggtcaccGggcgagagcgcaccgtcatg	13	14	2	1	rs150859028	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157366930	A	A	157366930	1	1	206	0	1	0	0	0	0	0	0	0	12916	1131	39	4		4	PTPRN2	7	157366930	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	614209	157366930	1771733	425	161608											
ERICH1	157697	broad.mit.edu	37	chr8	618725	618725	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggcagcatgctgtgtgaCgcaaggcggtccagcagctc	16	11	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	618725	A	A	618725	2	1	206	1	0	0	0	0	0	0	0	1	5272	523	19	3		3	ERICH1	8	618725	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08		618725	145745297	426	161609											
CSMD1	64478	broad.mit.edu	37	chr8	3038632	3038632	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaaagagttgaccttacTtttgtattccaggtggaaac	9	7	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3038632	G	G	3038632	3	3	206	1	0	0	0	0	1	0	0	0	3978	1623	56	5	5105	5	CSMD1	8	3038632	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	2419907	3038632	143325390	427	161610											
CSMD1	64478	broad.mit.edu	37	chr8	4645849	4645849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggtttgggaccagtgatGtctgggaacactgcatatcc	12	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4645849	T	T	4645849	1	4	206	0	1	0	0	0	0	0	0	0	3978	1392	48	3		3	CSMD1	8	4645849	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1607217	4645849	141718173	428	161611											
RP1L1	94137	broad.mit.edu	37	chr8	10480543	10480543	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctgaaggtcttaaaggCgcgctggtgaacggccaggc	17	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10480543	T	T	10480543	3	4	206	1	0	0	0	0	1	0	0	0	13644	768	27	4	7045	4	RP1L1	8	10480543	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5834694	10480543	135883479	429	161612											
XKR6	286046	broad.mit.edu	37	chr8	10782087	10782087	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgtgtgggaggcggccGtggtccccaggtggagggca	21	8	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10782087	A	A	10782087	1	1	206	0	1	0	0	0	0	0	0	0	17562	1160	40	4		4	XKR6	8	10782087	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	301544	10782087	135581935	430	161613											
MTMR9	66036	broad.mit.edu	37	chr8	11166994	11166994	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggtttctttatctttctAttttctgggtttgttatttt	6	4	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11166994	G	G	11166994	1	3	206	0	1	0	0	0	0	0	0	0	10044	464	16	5		5	MTMR9	8	11166994	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	384907	11166994	135197028	431	161614											
SGCZ	137868	broad.mit.edu	37	chr8	14412147	14412147	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacacacacttgtaaatattGatatgaataacttttgatta	4	5	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14412147	A	A	14412147	1	1	206	0	1	0	0	0	0	0	0	0	14317	1305	45	4		4	SGCZ	8	14412147	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3245153	14412147	131951875	432	161615											
DOK2	9046	broad.mit.edu	37	chr8	21769797	21769797	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgctccgctgcaggggcCgccaggaggtacaggcgctc	16	16	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21769797	T	T	21769797	2	4	206	1	0	0	0	0	0	0	0	1	4737	639	23	4		4	DOK2	8	21769797	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	7357650	21769797	124594225	433	161616											
EPB49	2039	broad.mit.edu	37	chr8	21938027	21938027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcttacacaggtccctgGgcagccggggtctgggctgt	18	11	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21938027	T	T	21938027	1	4	206	0	1	0	0	0	0	0	0	0	5201	1247	43	2		2	EPB49	8	21938027	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	168230	21938027	124425995	434	161617											
CLU	1191	broad.mit.edu	37	chr8	27468189	27468189	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgcccacctgctgcctgcAgcagctccccagggcctcac	9	22	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27468189	T	T	27468189	1	4	206	0	1	0	0	0	0	0	0	0	3600	203	7	5		5	CLU	8	27468189	5'Flank	SNP	A	TCGA-73-4666-01A-01D-1265-08	5530162	27468189	118895833	435	161618											
ZNF395	55893	broad.mit.edu	37	chr8	28206278	28206278	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccttcttccaccggcaggcCgtgcaccactggtcccggtg	12	17	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28206278	G	G	28206278	2	3	206	1	0	0	0	0	0	0	0	1	18008	639	23	4		4	ZNF395	8	28206278	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	738089	28206278	118157744	436	161619											
INTS9	55756	broad.mit.edu	37	chr8	28707883	28707883	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctccataaagttaagaaCagtttaaaattactggcagt	7	6	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28707883	T	T	28707883	1	4	206	0	1	0	0	0	0	0	0	0	7855	493	17	4		4	INTS9	8	28707883	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	501605	28707883	117656139	437	161620											
FUT10	84750	broad.mit.edu	37	chr8	33246950	33246950	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgagggaggtctttgtttCgtaaacattcaccataggaa	11	7	2	1	rs149448636		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33246950	T	T	33246950	3	4	206	1	0	0	0	0	1	0	0	0	6162	884	31	4	704	4	FUT10	8	33246950	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4539067	33246950	113117072	438	161621											
KCNU1	157855	broad.mit.edu	37	chr8	36776447	36776447	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcgaggggaaaattcaatgGagaaatttttgtgatatata	10	2	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36776447	C	C	36776447	1	2	206	0	1	0	0	0	0	0	0	0	8163	1189	41	4		4	KCNU1	8	36776447	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3529497	36776447	109587575	439	161622											
DDHD2	23259	broad.mit.edu	37	chr8	38099825	38099825	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacacattttaagaaagcccAagaaaatcagcagattggga	9	7	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38099825	G	G	38099825	3	3	206	1	0	0	0	0	1	0	0	0	4360	130	5	5	854	5	DDHD2	8	38099825	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1323378	38099825	108264197	440	161623											
POLB	5423	broad.mit.edu	37	chr8	42199897	42199897	+	Intron	SNP	T	A	A													tcaggccaaccttcacaccaTattttggcagttcgtgtgca							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42199897	A	A	42199897	1	1	206	0	1	0	0	0	0	0	0	0	12284	1421	49	5		5	POLB	8	42199897	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	4100072	42199897	104164125	441	161624	684	2									
POLB	5423	broad.mit.edu	37	chr8	42199899	42199899	+	Intron	SNP	T	A	A													aggccaaccttcacaccataTtttggcagttcgtgtgcata							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42199899	A	A	42199899	1	1	206	0	1	0	0	0	0	0	0	0	12284	1508	52	5		5	POLB	8	42199899	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2	42199899	104164123	442	161625	684	2									
SNTG1	54212	broad.mit.edu	37	chr8	51449417	51449417	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtttatgaaaaaagagAccttttagaaaaccttttga	6	4	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51449417	T	T	51449417	1	4	206	0	1	0	0	0	0	0	0	0	14988	290	10	5		5	SNTG1	8	51449417	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	9249518	51449417	94914605	443	161626											
SNTG1	54212	broad.mit.edu	37	chr8	51621420	51621420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatcaataacatgaaaaGtaacaatactttctgttcta	4	7	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51621420	T	T	51621420	1	4	206	0	1	0	0	0	0	0	0	0	14988	1044	36	3		3	SNTG1	8	51621420	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	172003	51621420	94742602	444	161627											
ST18	9705	broad.mit.edu	37	chr8	53038615	53038615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccctgtgctcttaccccCagttgctttgagcttgatgg	10	13	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53038615	A	A	53038615	3	1	206	1	0	0	0	0	1	0	0	0	15330	594	21	2	407	2	ST18	8	53038615	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1417195	53038615	93325407	445	161628											
FAM110B	90362	broad.mit.edu	37	chr8	59059927	59059927	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgtggaaaggagggagcGtgggtctctgtgcttacgca	18	7	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59059927	A	A	59059927	1	1	206	0	1	0	0	0	0	0	0	0	5443	1160	40	4		4	FAM110B	8	59059927	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	6021312	59059927	87304095	446	161629											
NKAIN3	286183	broad.mit.edu	37	chr8	63776522	63776522	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtggcggtggtggtggtgGaggtggaggagaaagaacta	22	2	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63776522	A	A	63776522	1	1	206	0	1	0	0	0	0	0	0	0	10532	1189	41	4		4	NKAIN3	8	63776522	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	4716595	63776522	82587500	447	161630											
MTFR1	9650	broad.mit.edu	37	chr8	66606033	66606033	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaactgagatgcaatatcTatttttttaaagaatgatat	6	4	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66606033	G	G	66606033	1	3	206	0	1	0	0	0	0	0	0	0	10019	1537	53	5		5	MTFR1	8	66606033	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2829511	66606033	79757989	448	161631											
EYA1	2138	broad.mit.edu	37	chr8	72182002	72182002	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctgttggcgtaggacccAgtaagcaaggagtggaaaac	13	7	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72182002	C	C	72182002	2	2	206	1	0	0	0	0	0	0	0	1	5371	175	7	5		5	EYA1	8	72182002	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	5575969	72182002	74182020	449	161632											
CNBD1	168975	broad.mit.edu	37	chr8	87951773	87951773	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atagtaaaagtccctgtaaaTaatttttatgcagtatacaa	5	5	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87951773	C	C	87951773	1	2	206	0	1	0	0	0	0	0	0	0	3623	1421	49	5		5	CNBD1	8	87951773	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	15769771	87951773	58412249	450	161633											
GDF6	392255	broad.mit.edu	37	chr8	97156985	97156985	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggctccaggtgcgagcGcagcgggaagtcgcatacac	17	11	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97156985	C	C	97156985	3	2	206	1	0	0	0	0	1	0	0	0	6381	1087	38	4	197	4	GDF6	8	97156985	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	9205212	97156985	49207037	451	161634											
POP1	10940	broad.mit.edu	37	chr8	99140498	99140498	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctctttacgccttcttgGtggaggaattcagttaagtt	9	8	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99140498	T	T	99140498	1	4	206	0	1	0	0	0	0	0	0	0	12346	1276	44	3		3	POP1	8	99140498	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1983513	99140498	47223524	452	161635											
RNF19A	25897	broad.mit.edu	37	chr8	101299685	101299685	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaattattttatccacaGagaaaaaaattaactcaaga	4	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101299685	A	A	101299685	1	1	206	0	1	0	0	0	0	0	0	0	13581	957	33	4		4	RNF19A	8	101299685	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2159187	101299685	45064337	453	161636											
RIMS2	9699	broad.mit.edu	37	chr8	104671612	104671612	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactaccttctcaaagccgAgggcccaccagcctaatttc	7	15	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104671612	G	G	104671612	1	3	206	0	1	0	0	0	0	0	0	0	13479	319	11	5		5	RIMS2	8	104671612	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	3371927	104671612	41692410	454	161637											
RIMS2	9699	broad.mit.edu	37	chr8	105001603	105001603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataatacaattagccgaatgGacagacatcgtgtcatggat	9	7	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105001603	T	T	105001603	3	4	206	1	0	0	0	0	1	0	0	0	13479	1174	41	3	3190	3	RIMS2	8	105001603	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	329991	105001603	41362419	455	161638											
ABRA	137735	broad.mit.edu	37	chr8	107773614	107773614	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcgtaatcaaactcttcaCtgaaaggattgagcttctgg	9	9	4	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107773614	G	G	107773614	3	3	206	1	0	0	0	0	1	0	0	0	100	565	20	4	352	4	ABRA	8	107773614	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2772011	107773614	38590408	456	161639											
CSMD3	114788	broad.mit.edu	37	chr8	113518775	113518775	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaatgacagtggcaaagCtagaacaactattagcactg	8	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113518775	A	A	113518775	1	1	206	0	1	0	0	0	0	0	0	0	3980	812	28	3		3	CSMD3	8	113518775	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	5745161	113518775	32845247	457	161640											
COL14A1	7373	broad.mit.edu	37	chr8	121312758	121312758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagctggttttagcaacaCccattgataatagtgattat	7	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121312758	A	A	121312758	1	1	206	0	1	0	0	0	0	0	0	0	3703	522	18	3		3	COL14A1	8	121312758	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	7793983	121312758	25051264	458	161641											
COL14A1	7373	broad.mit.edu	37	chr8	121353627	121353627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtggctctgctttctgGccccagcttgttgcacccct	9	16	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121353627	T	T	121353627	1	4	206	0	1	0	0	0	0	0	0	0	3703	1218	42	3		3	COL14A1	8	121353627	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	40869	121353627	25010395	459	161642											
TG	7038	broad.mit.edu	37	chr8	133931800	133931800	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggagtgcttctttgaaagAaaagccctgcaatgaaatgg	12	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133931800	G	G	133931800	1	3	206	0	1	0	0	0	0	0	0	0	15936	261	9	5		5	TG	8	133931800	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	12578173	133931800	12432222	460	161643											
WISP1	8840	broad.mit.edu	37	chr8	134239843	134239843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgggcttggcttctccCgccaggtcctatggattaat	11	11	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134239843	A	A	134239843	3	1	206	1	0	0	0	0	1	0	0	0	17499	652	23	1	1012	1	WISP1	8	134239843	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	308043	134239843	12124179	461	161644											
KHDRBS3	10656	broad.mit.edu	37	chr8	136594267	136594267	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggagtccccccaactgGgtacagacctccaccgccac	9	17	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136594267	A	A	136594267	3	1	206	1	0	0	0	0	1	0	0	0	8218	1232	43	4	780	4	KHDRBS3	8	136594267	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	2354424	136594267	9769755	462	161645											
EIF2C2	27161	broad.mit.edu	37	chr8	141542158	141542158	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgtcaagcaaagtacatGgtgcgcagagtgtcttggtg	13	7	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141542158	A	A	141542158	2	1	206	1	0	0	0	0	0	0	0	1	5046	1335	47	4		4	EIF2C2	8	141542158	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	4947891	141542158	4821864	463	161646											
EIF2C2	27161	broad.mit.edu	37	chr8	141570586	141570586	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccttcggacgcggtgaagAaggagcggcccacgggggtg	19	10	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141570586	G	G	141570586	3	3	206	1	0	0	0	0	1	0	0	0	5046	246	9	5	2097	5	EIF2C2	8	141570586	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	28428	141570586	4793436	464	161647											
CYP11B1	1584	broad.mit.edu	37	chr8	143959284	143959284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agctttatttatgtccagctGgctgttgtgagctgttgaca	11	7	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143959284	A	A	143959284	1	1	206	0	1	0	0	0	0	0	0	0	4178	1363	47	4		4	CYP11B1	8	143959284	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2388698	143959284	2404738	465	161648											
PLEC	5339	broad.mit.edu	37	chr8	145012371	145012371	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgaggttgtggccatcgCggaggtcttcatacaggtca	14	8	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145012371	T	T	145012371	3	4	206	1	0	0	0	0	1	0	0	0	12147	768	27	4	13551	4	PLEC	8	145012371	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1053087	145012371	1351651	466	161649											
DGAT1	8694	broad.mit.edu	37	chr8	145541627	145541627	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccggatgcggggagagcGgggaaagttgagctcgtagc	18	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145541627	T	T	145541627	3	4	206	1	0	0	0	0	1	0	0	0	4497	1116	39	1	697	1	DGAT1	8	145541627	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	529256	145541627	822395	467	161650											
PTPRD	5789	broad.mit.edu	37	chr9	8340574	8340574	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaataaaaaacgaaaacatAttattaatgcaattgaggta	5	4	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8340574	G	G	8340574	1	3	206	0	1	0	0	0	0	0	0	0	12907	464	16	5		5	PTPRD	9	8340574	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08		8340574	132872857	468	161651											
PTPRD	5789	broad.mit.edu	37	chr9	8465442	8465442	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tataagcgtaccataggaaaCagatgccatcataattaact	6	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8465442	T	T	8465442	1	4	206	0	1	0	0	0	0	0	0	0	12907	493	17	4		4	PTPRD	9	8465442	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	124868	8465442	132747989	469	161652											
FREM1	158326	broad.mit.edu	37	chr9	14813200	14813200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaacagccgtgaaatttggCcaagtaatctgtgtctttta	8	8	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14813200	A	A	14813200	1	1	206	0	1	0	0	0	0	0	0	0	6104	754	26	3		3	FREM1	9	14813200	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	6347758	14813200	126400231	470	161653											
PLAA	9373	broad.mit.edu	37	chr9	26917279	26917279	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacagaagagcaaaactTtcacatgatagaatgacaga	7	6	1	6			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26917279	A	A	26917279	1	1	206	0	1	0	0	0	0	0	0	0	12106	1856	64	5		5	PLAA	9	26917279	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	12104079	26917279	114296152	471	161654											
LINGO2	158038	broad.mit.edu	37	chr9	28150621	28150621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggatggtcttttgggaCaggaggaacaagaggttctg	16	5	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28150621	A	A	28150621	1	1	206	0	1	0	0	0	0	0	0	0	8888	493	17	3		3	LINGO2	9	28150621	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1233342	28150621	113062810	472	161655											
NFX1	4799	broad.mit.edu	37	chr9	33364178	33364178	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgagatgtcataactAatatgtactcctcctgtgat	6	8	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33364178	G	G	33364178	1	3	206	0	1	0	0	0	0	0	0	0	10482	377	13	5		5	NFX1	9	33364178	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	5213557	33364178	107849253	473	161656											
FANCG	2189	broad.mit.edu	37	chr9	35075050	35075050	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagtgccgcatctgactTacatccctgctcacagttga	8	14	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35075050	A	A	35075050	4	1	206	1	0	0	0	0	0	1	0	0	5725	1763	61	5	370	5	FANCG	9	35075050	Nonsense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1710872	35075050	106138381	474	161657											
POLR1E	64425	broad.mit.edu	37	chr9	37492576	37492576	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattattcttagatagacaaAtgaatattaaacactattac	3	5	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37492576	G	G	37492576	1	3	206	0	1	0	0	0	0	0	0	0	12308	116	4	5		5	POLR1E	9	37492576	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	2417526	37492576	103720855	475	161658											
FRMPD1	22844	broad.mit.edu	37	chr9	37746564	37746564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttcacagactgtagccGctgctccgcccggcacaggg	12	15	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37746564	T	T	37746564	3	4	206	1	0	0	0	0	1	0	0	0	6117	1087	38	3	4593	3	FRMPD1	9	37746564	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	253988	37746564	103466867	476	161659											
FAM75A3	727830	broad.mit.edu	37	chr9	40702812	40702812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctgttagcttccccggatCctcaagccaagcatcctcag	7	17	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702812	A	A	40702812	3	1	206	1	0	0	0	0	1	0	0	0	5672	855	30	3	483	3	FAM75A3	9	40702812	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2956248	40702812	100510619	477	161660											
TRPM3	80036	broad.mit.edu	37	chr9	73736094	73736094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctgcaagttacagtacCttcagaagtctgacagatgg	10	8	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73736094	A	A	73736094	3	1	206	1	0	0	0	0	1	0	0	0	16712	695	24	2	5169	2	TRPM3	9	73736094	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	33033282	73736094	67477337	478	161661											
VPS13A	23230	broad.mit.edu	37	chr9	79853290	79853290	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactggaagaatttcgcagtAagacagcaacaggtaaatgc	10	7	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79853290	G	G	79853290	3	3	206	1	0	0	0	0	1	0	0	0	17316	363	13	5	1962	5	VPS13A	9	79853290	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	6117196	79853290	61360141	479	161662											
UBQLN1	29979	broad.mit.edu	37	chr9	86278912	86278912	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgttagatccattagttcCcgaagagcctccagtgcttc	10	12	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86278912	A	A	86278912	4	1	206	1	0	0	0	0	0	1	0	0	17022	632	22	2	282	2	UBQLN1	9	86278912	Nonsense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	6425622	86278912	54934519	480	161663											
IARS	3376	broad.mit.edu	37	chr9	95015708	95015708	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatctacaaacttgaccaggCgaggcaccacagtataaagc	8	11	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95015708	T	T	95015708	3	4	206	1	0	0	0	0	1	0	0	0	7543	768	27	4	1679	4	IARS	9	95015708	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	8736796	95015708	46197723	481	161664											
GABBR2	9568	broad.mit.edu	37	chr9	101056346	101056346	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgtagtggctctcccggGaccaaggcggtgagctgaga	16	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101056346	T	T	101056346	1	4	206	0	1	0	0	0	0	0	0	0	6216	1189	41	3		3	GABBR2	9	101056346	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	6040638	101056346	40157085	482	161665											
COL15A1	1306	broad.mit.edu	37	chr9	101796745	101796745	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaatatcctatttccttGgagtccataattgtgcattg	6	7	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101796745	T	T	101796745	1	4	206	0	1	0	0	0	0	0	0	0	3704	1363	47	2		2	COL15A1	9	101796745	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	740399	101796745	39416686	483	161666											
GRIN3A	116443	broad.mit.edu	37	chr9	104433015	104433015	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcattactgctatggaggCtgctaaaaaggctgtccaat	9	8	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104433015	A	A	104433015	3	1	206	1	0	0	0	0	1	0	0	0	6849	797	28	3	1696	3	GRIN3A	9	104433015	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2636270	104433015	36780416	484	161667											
CYLC2	1539	broad.mit.edu	37	chr9	105767378	105767379	+	Missense_Mutation	DNP	AG	TT	TT													aaaggaaaagaagaaaagctAgatgcaaagaaagatagcaa							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	105767379	TT	TT	105767378	3	4	206	1	0	0	0	0	1	0	0	0	4175	407	15	5	483	5	CYLC2	9	105767378	Missense_Mutation	DNP	AG	TCGA-73-4666-01A-01D-1265-08	1334363	105767378	35446053	485	161668											
TNC	3371	broad.mit.edu	37	chr9	117810411	117810411	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgtggggagaaggtgaaaCagtagactacatttatggat	14	3	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117810411	G	G	117810411	1	3	206	0	1	0	0	0	0	0	0	0	16393	493	17	4		4	TNC	9	117810411	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	12043033	117810411	23403020	486	161669											
CRB2	286204	broad.mit.edu	37	chr9	126139094	126139094	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttctctgcggtcttaggCctcggtgtcgtgtctcttgc	11	14	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126139094	T	T	126139094	1	4	206	0	1	0	0	0	0	0	0	0	3881	754	26	4		4	CRB2	9	126139094	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	8328683	126139094	15074337	487	161670											
NEK6	10783	broad.mit.edu	37	chr9	127076195	127076195	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttctctttttcctcccGcccaagatctttgagatgat	5	12	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127076195	T	T	127076195	1	4	206	0	1	0	0	0	0	0	0	0	10423	1102	38	3		3	NEK6	9	127076195	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	937101	127076195	14137236	488	161671											
GARNL3	84253	broad.mit.edu	37	chr9	130151417	130151417	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtaatggttctcaatcctGgtttccactgtctgtgaaca	10	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130151417	A	A	130151417	1	1	206	0	1	0	0	0	0	0	0	0	6303	1363	47	4		4	GARNL3	9	130151417	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3075222	130151417	11062014	489	161672											
DOLK	22845	broad.mit.edu	37	chr9	131708450	131708450	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaggcttgatgcggaagTagcgcacatactccaggaag	12	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131708450	C	C	131708450	3	2	206	1	0	0	0	0	1	0	0	0	4743	1638	57	5	487	5	DOLK	9	131708450	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1557033	131708450	9504981	490	161673											
GFI1B	8328	broad.mit.edu	37	chr9	135865147	135865148	+	Missense_Mutation	DNP	CG	TT	TT													aggagcgcagcttcgagtgcCgcatgtgcggcaaggccttc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	135865148	TT	TT	135865147	3	4	206	1	0	0	0	0	1	0	0	0	6404	652	23	4	685	4	GFI1B	9	135865147	Missense_Mutation	DNP	CG	TCGA-73-4666-01A-01D-1265-08	4156697	135865147	5348284	491	161674											
FCN2	2220	broad.mit.edu	37	chr9	137772603	137772603	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagatgagaaattggagtctGagggaggctggcttctctag	15	5	2	3	rs144529729	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137772603	T	T	137772603	1	4	206	0	1	0	0	0	0	0	0	0	5849	1305	45	3		3	FCN2	9	137772603	5'Flank	SNP	G	TCGA-73-4666-01A-01D-1265-08	1907456	137772603	3440828	492	161675											
LARP4B	23185	broad.mit.edu	37	chr10	910237	910237	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgtaagatagacattTgtatccaaatgtcaaccaaa	6	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	910237	A	A	910237	1	1	206	0	1	0	0	0	0	0	0	0	8703	1827	63	5		5	LARP4B	10	910237	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08		910237	134624510	493	161676											
GTPBP4	23560	broad.mit.edu	37	chr10	1053127	1053127	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcagcaggtgctgtctgcGtgccttttccagaagcctcc	11	13	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1053127	T	T	1053127	1	4	206	0	1	0	0	0	0	0	0	0	6947	1160	40	3		3	GTPBP4	10	1053127	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	142890	1053127	134481620	494	161677											
PITRM1	10531	broad.mit.edu	37	chr10	3197668	3197668	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgagctctgttggcgcCcagcggacacctgttggttg	14	11	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3197668	A	A	3197668	1	1	206	0	1	0	0	0	0	0	0	0	12048	638	22	2		2	PITRM1	10	3197668	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2144541	3197668	132337079	495	161678											
CALML3	810	broad.mit.edu	37	chr10	5567052	5567052	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcccccacccctggcatgGccgaccagctgactgaggag	12	17	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5567052	A	A	5567052	3	1	206	1	0	0	0	0	1	0	0	0	2613	1203	42	4	6	4	CALML3	10	5567052	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	2369384	5567052	129967695	496	161679											
SFMBT2	57713	broad.mit.edu	37	chr10	7214469	7214469	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacatacctcccccgagccCgcggtgaagtccacggcaga	11	16	0	2	rs145957081	byFrequency	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7214469	A	A	7214469	2	1	206	1	0	0	0	0	0	0	0	1	14271	639	23	1		1	SFMBT2	10	7214469	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1647417	7214469	128320278	497	161680											
ITGA8	8516	broad.mit.edu	37	chr10	15628734	15628734	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaatatatgatcataaaaaAcattctacatatcacaggag	4	7	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15628734	G	G	15628734	1	3	206	0	1	0	0	0	0	0	0	0	7952	58	2	5		5	ITGA8	10	15628734	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	8414265	15628734	119906013	498	161681											
ITGA8	8516	broad.mit.edu	37	chr10	15647806	15647806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcctgtgttgtataaacGcacgtcaggaacaatctagg	11	8	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15647806	T	T	15647806	1	4	206	0	1	0	0	0	0	0	0	0	7952	1102	38	3		3	ITGA8	10	15647806	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	19072	15647806	119886941	499	161682											
VIM	7431	broad.mit.edu	37	chr10	17278279	17278279	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttttactcatttttggcctGtttgtttatttagaaactaa	5	5	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17278279	C	C	17278279	1	2	206	0	1	0	0	0	0	0	0	0	17293	1392	48	4		4	VIM	10	17278279	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1630473	17278279	118256468	500	161683											
SLC39A12	221074	broad.mit.edu	37	chr10	18280026	18280026	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatttaatagttaagtcatCaagacttatctccatctttc	3	9	4	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18280026	T	T	18280026	1	4	206	0	1	0	0	0	0	0	0	0	14729	841	29	4		4	SLC39A12	10	18280026	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1001747	18280026	117254721	501	161684											
MLLT10	8028	broad.mit.edu	37	chr10	22024169	22024169	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaacagctcacaccagtaaGttctttcttttgataatatc	4	10	4	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22024169	C	C	22024169	1	2	206	0	1	0	0	0	0	0	0	0	9719	1044	36	4		4	MLLT10	10	22024169	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3744143	22024169	113510578	502	161685											
ARMC3	219681	broad.mit.edu	37	chr10	23287319	23287319	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgtgacgttgaagcccGgactgaggtgagaattttaa	14	6	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23287319	T	T	23287319	3	4	206	1	0	0	0	0	1	0	0	0	956	1116	39	1	1456	1	ARMC3	10	23287319	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1263150	23287319	112247428	503	161686											
MYO3A	53904	broad.mit.edu	37	chr10	26465695	26465695	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaatgattttgtcacaGcaactgaagtcactttatct	6	7	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26465695	A	A	26465695	2	1	206	1	0	0	0	0	0	0	0	1	10170	962	34	4		4	MYO3A	10	26465695	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	3178376	26465695	109069052	504	161687											
ZEB1	6935	broad.mit.edu	37	chr10	31809437	31809437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctcctcagggcatggtgCaagctgttgttctgccaaca	11	11	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31809437	A	A	31809437	3	1	206	1	0	0	0	0	1	0	0	0	17749	711	25	3	1214	3	ZEB1	10	31809437	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5343742	31809437	103725310	505	161688											
PARD3	56288	broad.mit.edu	37	chr10	34671895	34671895	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagcaaattaagactggcaGactagaagatattatgagct	9	5	0	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34671895	C	C	34671895	1	2	206	0	1	0	0	0	0	0	0	0	11537	957	33	4		4	PARD3	10	34671895	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2862458	34671895	100862852	506	161689											
ZNF25	219749	broad.mit.edu	37	chr10	38246178	38246178	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atttagattctttcagcgggGagagagggacacaaatattt	11	5	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38246178	C	C	38246178	1	2	206	0	1	0	0	0	0	0	0	0	17920	1189	41	4		4	ZNF25	10	38246178	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3574283	38246178	97288569	507	161690											
ZNF33A	7581	broad.mit.edu	37	chr10	38306370	38306370	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttgttgtttcccagtaGttaattcagggtttggcaac	11	6	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38306370	T	T	38306370	1	4	206	0	1	0	0	0	0	0	0	0	17980	1044	36	3		3	ZNF33A	10	38306370	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	60192	38306370	97228377	508	161691											
ZNF485	220992	broad.mit.edu	37	chr10	44104250	44104250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactttgtgttttcacagGgtgaatggtttggggtattg	14	4	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44104250	T	T	44104250	1	4	206	0	1	0	0	0	0	0	0	0	18065	1247	43	2		2	ZNF485	10	44104250	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	5797880	44104250	91430497	509	161692											
FRMPD2	143162	broad.mit.edu	37	chr10	49371639	49371639	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtccctccagctgtcctcttGatccaggatggggctggtac	12	13	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49371639	T	T	49371639	3	4	206	1	0	0	0	0	1	0	0	0	6118	1299	45	3	324	3	FRMPD2	10	49371639	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	5267389	49371639	86163108	510	161693											
A1CF	29974	broad.mit.edu	37	chr10	52569546	52569546	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccaaggttgtgcaagtcaGattgctgtaagtagggtaca	12	7	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52569546	A	A	52569546	1	1	206	0	1	0	0	0	0	0	0	0	2	957	33	4		4	A1CF	10	52569546	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3197907	52569546	82965201	511	161694											
MBL2	4153	broad.mit.edu	37	chr10	54530406	54530406	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaccctgggtgaagtcagCtcagaccttgctggggtcct	13	11	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54530406	A	A	54530406	1	1	206	0	1	0	0	0	0	0	0	0	9443	812	28	3		3	MBL2	10	54530406	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1960860	54530406	81004341	512	161695											
PCDH15	65217	broad.mit.edu	37	chr10	55581628	55581628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcaacattacagtgaaGtagattgactgtgagattgt	10	4	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55581628	T	T	55581628	3	4	206	1	0	0	0	0	1	0	0	0	11605	1029	36	3	1619	3	PCDH15	10	55581628	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1051222	55581628	79953119	513	161696											
BICC1	80114	broad.mit.edu	37	chr10	60546676	60546676	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtaataatacattattttCacatagagcaatcgagtcac	5	7	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60546676	G	G	60546676	1	3	206	0	1	0	0	0	0	0	0	0	1433	841	29	4		4	BICC1	10	60546676	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	4965048	60546676	74988071	514	161697											
ANK3	288	broad.mit.edu	37	chr10	61956229	61956229	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattagtgaatattagcaagGgtgtattttgttatcgtgga	11	2	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61956229	C	C	61956229	1	2	206	0	1	0	0	0	0	0	0	0	622	1247	43	4		4	ANK3	10	61956229	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1409553	61956229	73578518	515	161698											
CTNNA3	29119	broad.mit.edu	37	chr10	69366571	69366571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatttgggtgactaacaccCtaaagatatgcagtttgctc	8	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69366571	A	A	69366571	1	1	206	0	1	0	0	0	0	0	0	0	4048	696	24	2		2	CTNNA3	10	69366571	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	7410342	69366571	66168176	516	161699											
MYPN	84665	broad.mit.edu	37	chr10	69961791	69961791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagggactcccactctcaGtggggcttgttgcgccaccc	12	15	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69961791	T	T	69961791	1	4	206	0	1	0	0	0	0	0	0	0	10192	1044	36	3		3	MYPN	10	69961791	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	595220	69961791	65572956	517	161700											
HKDC1	80201	broad.mit.edu	37	chr10	71005913	71005913	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagatggccaaggctggcctCctgtttggtggtgagaaatc	14	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71005913	T	T	71005913	2	4	206	1	0	0	0	0	0	0	0	1	7260	842	30	4		4	HKDC1	10	71005913	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1044122	71005913	64528834	518	161701											
ADAMTS14	140766	broad.mit.edu	37	chr10	72434357	72434357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactatggtgtgacagtgcCctgcagcacagactttcggg	13	10	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72434357	A	A	72434357	3	1	206	1	0	0	0	0	1	0	0	0	259	623	22	2	134	2	ADAMTS14	10	72434357	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1428444	72434357	63100390	519	161702											
CCDC109A	90550	broad.mit.edu	37	chr10	74631166	74631166	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattagcagaaaagctgagaAgaggaccactttggtgctat	12	6	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74631166	G	G	74631166	3	3	206	1	0	0	0	0	1	0	0	0	2770	72	3	5	711	5	CCDC109A	10	74631166	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	2196809	74631166	60903581	520	161703											
TTC18	118491	broad.mit.edu	37	chr10	75072314	75072314	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcttagaaacagcttgttTggacagcagagaattaattc	8	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75072314	A	A	75072314	4	1	206	1	0	0	0	0	0	1	0	0	16811	1821	63	5	2227	5	TTC18	10	75072314	Nonsense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	441148	75072314	60462433	521	161704											
MYOZ1	58529	broad.mit.edu	37	chr10	75399594	75399594	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccatcacccgccttcccAccacttaatttctcttgttt	2	18	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75399594	G	G	75399594	1	3	206	0	1	0	0	0	0	0	0	0	10189	174	6	5		5	MYOZ1	10	75399594	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	327280	75399594	60135153	522	161705											
AGAP5	729092	broad.mit.edu	37	chr10	75434251	75434251	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatgaaaagtactgaaaaTgctattactagctgaatttg	7	4	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75434251	C	C	75434251	1	2	206	0	1	0	0	0	0	0	0	0	371	1479	51	5		5	AGAP5	10	75434251	3'UTR	SNP	T	TCGA-73-4666-01A-01D-1265-08	34657	75434251	60100496	523	161706											
ANXA11	311	broad.mit.edu	37	chr10	81926685	81926685	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaagtaggatctgctgCcgctgcttgttggagcgact	14	8	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81926685	T	T	81926685	2	4	206	1	0	0	0	0	0	0	0	1	716	726	26	4		4	ANXA11	10	81926685	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	6492434	81926685	53608062	524	161707											
LRIT2	340745	broad.mit.edu	37	chr10	85984092	85984092	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggtgcatgtggcttaccatCaaattctctccacatactca	7	12	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85984092	A	A	85984092	3	1	206	1	0	0	0	0	1	0	0	0	9035	826	29	3	771	3	LRIT2	10	85984092	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4057407	85984092	49550655	525	161708											
ZNF518A	9849	broad.mit.edu	37	chr10	97920261	97920261	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaccagtttgttataacCctcctaaaacaacttatgat	4	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97920261	T	T	97920261	3	4	206	1	0	0	0	0	1	0	0	0	18089	610	22	4	4184	4	ZNF518A	10	97920261	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	11936169	97920261	37614486	526	161709											
DNTT	1791	broad.mit.edu	37	chr10	98080317	98080317	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcaagaggcgtttgtgagtGaccactggctcaggggcttg	16	8	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98080317	T	T	98080317	1	4	206	0	1	0	0	0	0	0	0	0	4720	1305	45	3		3	DNTT	10	98080317	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	160056	98080317	37454430	527	161710											
SLIT1	6585	broad.mit.edu	37	chr10	98923246	98923246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggacagctacagggtgtGggacaagggctgctagaaac	15	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98923246	T	T	98923246	1	4	206	0	1	0	0	0	0	0	0	0	14853	1363	47	2		2	SLIT1	10	98923246	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	842929	98923246	36611501	528	161711											
HPSE2	60495	broad.mit.edu	37	chr10	100995265	100995265	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatccatcgaaacccctgcCttaccttaggaaatcgagcc	7	14	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100995265	T	T	100995265	1	4	206	0	1	0	0	0	0	0	0	0	7412	696	24	4		4	HPSE2	10	100995265	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2072019	100995265	34539482	529	161712											
GOT1	2805	broad.mit.edu	37	chr10	101190365	101190365	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatttcaccccacgcccggaGctggcaggtcaggtctggcc	13	15	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101190365	C	C	101190365	1	2	206	0	1	0	0	0	0	0	0	0	6643	986	34	4		4	GOT1	10	101190365	5'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	195100	101190365	34344382	530	161713											
CHUK	1147	broad.mit.edu	37	chr10	101953696	101953696	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcccctttgcaaggaataaTagcaactcaatgtcacatta	5	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101953696	C	C	101953696	1	2	206	0	1	0	0	0	0	0	0	0	3447	1421	49	5		5	CHUK	10	101953696	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	763331	101953696	33581051	531	161714											
BTRC	8945	broad.mit.edu	37	chr10	103298102	103298102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacccccgtgctcctgcaGggacactctgtctacggacc	11	16	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103298102	T	T	103298102	3	4	206	1	0	0	0	0	1	0	0	0	1579	1000	35	2	1680	2	BTRC	10	103298102	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1344406	103298102	32236645	532	161715											
ACTR1A	10121	broad.mit.edu	37	chr10	104240541	104240541	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcacacacaggcagttcCtcgcaaacactccgactcaa	5	17	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104240541	A	A	104240541	1	1	206	0	1	0	0	0	0	0	0	0	209	696	24	2		2	ACTR1A	10	104240541	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	942439	104240541	31294206	533	161716											
NEURL	9148	broad.mit.edu	37	chr10	105350158	105350158	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcccatcccgcataccCatcttctcgggcttcagccc	9	18	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105350158	A	A	105350158	1	1	206	0	1	0	0	0	0	0	0	0	10440	609	21	2		2	NEURL	10	105350158	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	1109617	105350158	30184589	534	161717											
SORCS1	114815	broad.mit.edu	37	chr10	108427477	108427477	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtaactctgtcccaagCtgcaatcctttgacagagag	10	10	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108427477	A	A	108427477	3	1	206	1	0	0	0	0	1	0	0	0	15044	797	28	3	1507	3	SORCS1	10	108427477	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3077319	108427477	27107270	535	161718											
CASP7	840	broad.mit.edu	37	chr10	115481472	115481472	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaagtgcttccgaagcCtgggttttgacgtgattgtc	11	9	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115481472	T	T	115481472	2	4	206	1	0	0	0	0	0	0	0	1	2702	680	24	4		4	CASP7	10	115481472	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	7053995	115481472	20053275	536	161719											
AFAP1L2	84632	broad.mit.edu	37	chr10	116062394	116062394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcttctcctgttcaccaGcctatcccaccccccagtgg	7	18	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116062394	T	T	116062394	1	4	206	0	1	0	0	0	0	0	0	0	355	986	34	3		3	AFAP1L2	10	116062394	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	580922	116062394	19472353	537	161720											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118236538	118236538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattaaatcgggggatctaCcgtgtctttttcttccctgg	9	10	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118236538	A	A	118236538	1	1	206	0	1	0	0	0	0	0	0	0	12247	522	18	3		3	PNLIPRP3	10	118236538	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2174144	118236538	17298209	538	161721											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118351521	118351521	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaataccttatctctgtgCcctcttcctccaccatgccc	4	17	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118351521	T	T	118351521	1	4	206	0	1	0	0	0	0	0	0	0	12245	754	26	4		4	PNLIPRP1	10	118351521	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	114983	118351521	17183226	539	161722											
CPXM2	119587	broad.mit.edu	37	chr10	125558486	125558486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttcagggcagggaaagGgtctctgtccatcagactgt	15	9	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125558486	T	T	125558486	1	4	206	0	1	0	0	0	0	0	0	0	3870	1247	43	2		2	CPXM2	10	125558486	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	7206965	125558486	9976261	540	161723											
MMP21	118856	broad.mit.edu	37	chr10	127464435	127464435	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcctggcttcttccccGtccccgtcacctctccttaa	5	21	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127464435	T	T	127464435	1	4	206	0	1	0	0	0	0	0	0	0	9753	1160	40	3		3	MMP21	10	127464435	5'Flank	SNP	G	TCGA-73-4666-01A-01D-1265-08	1905949	127464435	8070312	541	161724											
ADAM12	8038	broad.mit.edu	37	chr10	127760250	127760250	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggagagcccagaacagtaAgtcacagggcatggaatggc	14	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127760250	C	C	127760250	1	2	206	0	1	0	0	0	0	0	0	0	236	87	3	5		5	ADAM12	10	127760250	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	295815	127760250	7774497	542	161725											
FRG2B	441581	broad.mit.edu	37	chr10	135440053	135440053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttccagactccataggagCagcccaaggccttaccttgc	8	16	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135440053	A	A	135440053	1	1	206	0	1	0	0	0	0	0	0	0	6107	725	25	3		3	FRG2B	10	135440053	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	7679803	135440053	94694	543	161726											
LSP1	4046	broad.mit.edu	37	chr11	1874440	1874440	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctggggtaagggtctgcGgcgacgcccggcgccctgtg	18	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1874440	T	T	1874440	1	4	206	0	1	0	0	0	0	0	0	0	9150	1131	39	1		1	LSP1	11	1874440	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08		1874440	133132076	544	161727											
OR52K1	390036	broad.mit.edu	37	chr11	4510855	4510855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgctacaaggcatttgggaCatgtgtgtctcacataggtg	12	9	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4510855	A	A	4510855	3	1	206	1	0	0	0	0	1	0	0	0	11217	478	17	3	727	3	OR52K1	11	4510855	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2636415	4510855	130495661	545	161728											
OR51G2	81282	broad.mit.edu	37	chr11	4936463	4936463	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccaatcctgccaatgactGtgttggtgagaatggaaaca	12	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4936463	C	C	4936463	3	2	206	1	0	0	0	0	1	0	0	0	11193	1377	48	4	517	4	OR51G2	11	4936463	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	425608	4936463	130070053	546	161729											
OR51V1	283111	broad.mit.edu	37	chr11	5221019	5221019	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggtatgaatctgttgggtCttgacactgtagatgatggg	14	5	2	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5221019	A	A	5221019	3	1	206	1	0	0	0	0	1	0	0	0	11201	912	32	3	56	3	OR51V1	11	5221019	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	284556	5221019	129785497	547	161730											
CNGA4	1262	broad.mit.edu	37	chr11	6261575	6261575	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgtcatccattggaacaGctgcctatactttgccctat	7	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6261575	T	T	6261575	3	4	206	1	0	0	0	0	1	0	0	0	3631	971	34	3	565	3	CNGA4	11	6261575	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1040556	6261575	128744941	548	161731											
OLFML1	283298	broad.mit.edu	37	chr11	7530611	7530611	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataaagtaatctctccttTttctcctgtttggccaggct	6	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7530611	C	C	7530611	1	2	206	0	1	0	0	0	0	0	0	0	10951	1856	64	5		5	OLFML1	11	7530611	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	1269036	7530611	127475905	549	161732											
SOX6	55553	broad.mit.edu	37	chr11	16071447	16071447	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caggctctgctgtcttgggtCgggatgagagattcagaggc	16	8	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16071447	G	G	16071447	3	3	206	1	0	0	0	0	1	0	0	0	15069	884	31	4	1263	4	SOX6	11	16071447	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	8540836	16071447	118935069	550	161733											
ANO3	63982	broad.mit.edu	37	chr11	26463539	26463539	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatccctgccttgcctcGcccagagctacgcttactca	9	16	1	2	rs150999282		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26463539	T	T	26463539	3	4	206	1	0	0	0	0	1	0	0	0	698	1087	38	3	127	3	ANO3	11	26463539	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	10392092	26463539	108542977	551	161734											
PRR5L	79899	broad.mit.edu	37	chr11	36440898	36440899	+	Intron	DNP	GG	TT	TT													catcattatcatgcatgtggGggcatggacctaaaaggggt							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36440899	TT	TT	36440898	1	4	206	0	1	0	0	0	0	0	0	0	12708	1247	43	2		2	PRR5L	11	36440898	Intron	DNP	GG	TCGA-73-4666-01A-01D-1265-08	9977359	36440898	98565618	552	161735											
PRR5L	79899	broad.mit.edu	37	chr11	36484020	36484021	+	Frame_Shift_Ins	INS	-	T	T													gcaggagggggaagcctaccINStggagaagtgtggcagcgtg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36484021	T	T	36484020	7	5	206	1	0	1	1	0	0	0	0	0	12708	680	24	0	877	0	PRR5L	11	36484020	Frame_Shift_Ins	INS	-	TCGA-73-4666-01A-01D-1265-08	43122	36484020	98522496	553	161736											
RAG1	5896	broad.mit.edu	37	chr11	36594916	36594916	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagatgaaattcagcaccCacatattaaattttcagaat	4	10	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36594916	A	A	36594916	3	1	206	1	0	0	0	0	1	0	0	0	13111	594	21	2	64	2	RAG1	11	36594916	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	110896	36594916	98411600	554	161737											
LRRC4C	57689	broad.mit.edu	37	chr11	40136961	40136961	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgatgtaaatgtatccgCtctagatgatgcaagggagt	12	5	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40136961	A	A	40136961	3	1	206	1	0	0	0	0	1	0	0	0	9095	796	28	3	1044	3	LRRC4C	11	40136961	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3542045	40136961	94869555	555	161738											
AGBL2	79841	broad.mit.edu	37	chr11	47727216	47727216	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaaaaaaaaagaaaaaGaaaaagaagaaagggaatga	8	0	0	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47727216	A	A	47727216	1	1	206	0	1	0	0	0	0	0	0	0	376	957	33	4		4	AGBL2	11	47727216	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	7590255	47727216	87279300	556	161739											
NUP160	23279	broad.mit.edu	37	chr11	47808067	47808067	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagccaggcccaggcttcTgcttgtgctgcctctcctcc	10	17	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47808067	C	C	47808067	2	2	206	1	0	0	0	0	0	0	0	1	10852	1567	55	5		5	NUP160	11	47808067	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	80851	47808067	87198449	557	161740											
FOLH1	2346	broad.mit.edu	37	chr11	49204738	49204738	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcatagtatccaattggatGaacaggaatacttggaagac	9	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49204738	T	T	49204738	3	4	206	1	0	0	0	0	1	0	0	0	6037	1290	45	3	1421	3	FOLH1	11	49204738	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1396671	49204738	85801778	558	161741											
SPRYD5	84767	broad.mit.edu	37	chr11	55648306	55648306	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgtgtattggatgtgacCgtccaaatccgccccatatc	9	12	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55648306	A	A	55648306	1	1	206	0	1	0	0	0	0	0	0	0	15229	667	23	1		1	SPRYD5	11	55648306	5'Flank	SNP	C	TCGA-73-4666-01A-01D-1265-08	6443568	55648306	79358210	559	161742											
SPRYD5	84767	broad.mit.edu	37	chr11	55657566	55657566	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtctattacttcttgttaGaatcatgggggtagtatttt	9	5	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55657566	T	T	55657566	1	4	206	0	1	0	0	0	0	0	0	0	15229	957	33	3		3	SPRYD5	11	55657566	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	9260	55657566	79348950	560	161743											
OR8K5	219453	broad.mit.edu	37	chr11	55927837	55927837	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaacagttgggttattaGctgttccatgtagtgctatt	10	5	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55927837	T	T	55927837	1	4	206	0	1	0	0	0	0	0	0	0	11339	986	34	3		3	OR8K5	11	55927837	5'Flank	SNP	G	TCGA-73-4666-01A-01D-1265-08	270271	55927837	79078679	561	161744											
OR5T2	219464	broad.mit.edu	37	chr11	55999812	55999812	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ataaattgacactccagttaGgtgagctccacatgtggaga	10	8	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55999812	C	C	55999812	3	2	206	1	0	0	0	0	1	0	0	0	11276	991	35	4	228	4	OR5T2	11	55999812	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	71975	55999812	79006704	562	161745											
OR5M9	390162	broad.mit.edu	37	chr11	56230498	56230498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttactgccataaagcagaGggttgcagccggccatgtac	11	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56230498	T	T	56230498	3	4	206	1	0	0	0	0	1	0	0	0	11271	1000	35	2	554	2	OR5M9	11	56230498	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	230686	56230498	78776018	563	161746											
SLC43A3	29015	broad.mit.edu	37	chr11	57191345	57191345	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttcaagctgcagatctcTgaataaccatgtggtctgta	8	9	4	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57191345	C	C	57191345	1	2	206	0	1	0	0	0	0	0	0	0	14748	1595	55	5		5	SLC43A3	11	57191345	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	960847	57191345	77815171	564	161747											
OR10W1	81341	broad.mit.edu	37	chr11	58034376	58034376	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatttggtgggctggaaCcaaatacttgcctgataggc	12	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58034376	A	A	58034376	1	1	206	0	1	0	0	0	0	0	0	0	11015	522	18	3		3	OR10W1	11	58034376	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	843031	58034376	76972140	565	161748											
OR5B3	441608	broad.mit.edu	37	chr11	58170869	58170869	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgaattgtgttacttctGtcttattttccatcactgct	6	8	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58170869	A	A	58170869	3	1	206	1	0	0	0	0	1	0	0	0	11246	1377	48	4	932	4	OR5B3	11	58170869	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	136493	58170869	76835647	566	161749											
MS4A12	54860	broad.mit.edu	37	chr11	60264840	60264840	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagtaaatgaaaccataCccaacccttacccaccaagc	4	15	0	2	rs138899173		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60264840	T	T	60264840	3	4	206	1	0	0	0	0	1	0	0	0	9950	507	18	4	51	4	MS4A12	11	60264840	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2093971	60264840	74741676	567	161750											
MS4A8B	83661	broad.mit.edu	37	chr11	60482741	60482741	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaggcctttggtgcatggcCcgtccttcttagcatgcccc	11	15	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60482741	T	T	60482741	1	4	206	0	1	0	0	0	0	0	0	0	9961	638	22	4		4	MS4A8B	11	60482741	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	217901	60482741	74523775	568	161751											
SLC15A3	51296	broad.mit.edu	37	chr11	60711180	60711180	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggaagtagaccatccagTagggcaccagggtcaccatg	12	12	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60711180	C	C	60711180	3	2	206	1	0	0	0	0	1	0	0	0	14513	1638	57	5	792	5	SLC15A3	11	60711180	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	228439	60711180	74295336	569	161752											
DAGLA	747	broad.mit.edu	37	chr11	61511535	61511535	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcgctgcacaatgggcgCctgggggactcgcccagtcc	15	15	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61511535	G	G	61511535	2	3	206	1	0	0	0	0	0	0	0	1	4259	726	26	4		4	DAGLA	11	61511535	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	800355	61511535	73494981	570	161753											
PLA2G16	11145	broad.mit.edu	37	chr11	63342429	63342429	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttcagttattgcttttgTcgcttgtttcttgagaacat	7	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63342429	C	C	63342429	2	2	206	1	0	0	0	0	0	0	0	1	12088	1654	58	5		5	PLA2G16	11	63342429	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	1830894	63342429	71664087	571	161754											
NRXN2	9379	broad.mit.edu	37	chr11	64435233	64435233	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccactcccacccagcagCgagcaccaggggacccagcc	11	19	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64435233	A	A	64435233	1	1	206	0	1	0	0	0	0	0	0	0	10761	783	27	3		3	NRXN2	11	64435233	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1092804	64435233	70571283	572	161755											
NAALADL1	10004	broad.mit.edu	37	chr11	64820842	64820842	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaggggcagagaaccagagGagagggagaggtgggcaggg	22	4	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64820842	T	T	64820842	1	4	206	0	1	0	0	0	0	0	0	0	10223	1189	41	3		3	NAALADL1	11	64820842	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	385609	64820842	70185674	573	161756											
OVOL1	5017	broad.mit.edu	37	chr11	65561681	65561681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggccacttgacagaccccCagagcagagaccatggcttc	11	14	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65561681	A	A	65561681	3	1	206	1	0	0	0	0	1	0	0	0	11420	595	21	2	286	2	OVOL1	11	65561681	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	740839	65561681	69444835	574	161757											
DRAP1	10589	broad.mit.edu	37	chr11	65688902	65688902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacgaagaagattacgactCctagcgccttctgcccccca	9	15	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65688902	A	A	65688902	3	1	206	1	0	0	0	0	1	0	0	0	4795	855	30	3	640	3	DRAP1	11	65688902	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	127221	65688902	69317614	575	161758											
RAD9A	5883	broad.mit.edu	37	chr11	67159667	67159667	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactccctgtcccgcatcGgggacgagctctacctggaa	10	16	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67159667	T	T	67159667	3	4	206	1	0	0	0	0	1	0	0	0	13103	1116	39	1	76	1	RAD9A	11	67159667	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1470765	67159667	67846849	576	161759											
ALDH3B1	221	broad.mit.edu	37	chr11	67787274	67787274	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttcacaggtgaggccGggacgagggtcgggacaggc	17	10	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67787274	A	A	67787274	1	1	206	0	1	0	0	0	0	0	0	0	499	1131	39	4		4	ALDH3B1	11	67787274	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	627607	67787274	67219242	577	161760											
SUV420H1	51111	broad.mit.edu	37	chr11	67941343	67941343	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tacatggcaatatttcaaatCcactgtcagttgcaaacatt	5	9	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67941343	G	G	67941343	3	3	206	1	0	0	0	0	1	0	0	0	15532	855	30	4	2108	4	SUV420H1	11	67941343	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	154069	67941343	67065173	578	161761											
NUMA1	4926	broad.mit.edu	37	chr11	71729393	71729393	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtatgggttcctggctgGgtgaggggaggggctggggc	23	5	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71729393	A	A	71729393	1	1	206	0	1	0	0	0	0	0	0	0	10845	1247	43	4		4	NUMA1	11	71729393	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3788050	71729393	63277123	579	161762											
LRRC32	2615	broad.mit.edu	37	chr11	76371885	76371885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggagcagtttgttctccCgcaggtcaagccaggtgagc	13	10	2	1	rs141823453		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76371885	A	A	76371885	3	1	206	1	0	0	0	0	1	0	0	0	9074	652	23	1	1240	1	LRRC32	11	76371885	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4642492	76371885	58634631	580	161763											
MYO7A	4647	broad.mit.edu	37	chr11	76916626	76916626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaagcactgcccactcgCcatcgactgcctgcaacggc	9	18	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76916626	A	A	76916626	3	1	206	1	0	0	0	0	1	0	0	0	10176	739	26	3	5788	3	MYO7A	11	76916626	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	544741	76916626	58089890	581	161764											
ALG8	79053	broad.mit.edu	37	chr11	77835389	77835389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcgtggtagctcacacCtgtaaccccagcactttggg	12	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77835389	A	A	77835389	1	1	206	0	1	0	0	0	0	0	0	0	523	696	24	2		2	ALG8	11	77835389	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	918763	77835389	57171127	582	161765											
NARS2	79731	broad.mit.edu	37	chr11	78152215	78152215	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacggcaataagataaatatTaaccactagacatttattct	4	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78152215	C	C	78152215	1	2	206	0	1	0	0	0	0	0	0	0	10265	1769	61	5		5	NARS2	11	78152215	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	316826	78152215	56854301	583	161766											
ODZ4	26011	broad.mit.edu	37	chr11	78412990	78412990	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataaaccgaattcggatgttCccaaggtcggccacgtagag	11	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78412990	T	T	78412990	2	4	206	1	0	0	0	0	0	0	0	1	10932	842	30	4		4	ODZ4	11	78412990	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	260775	78412990	56593526	584	161767											
GRM5	2915	broad.mit.edu	37	chr11	88583213	88583213	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagcttcttcagcagcttatCaaagctctgctcccctgcat	7	14	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88583213	T	T	88583213	3	4	206	1	0	0	0	0	1	0	0	0	6866	826	29	4	2898	4	GRM5	11	88583213	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	10170223	88583213	46423303	585	161768											
TRIM49	57093	broad.mit.edu	37	chr11	89537745	89537745	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttctcttgacagtgtTcattaaagtacaacaaacta	4	8	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89537745	A	A	89537745	1	1	206	0	1	0	0	0	0	0	0	0	16649	1798	62	5		5	TRIM49	11	89537745	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	954532	89537745	45468771	586	161769											
NAALAD2	10003	broad.mit.edu	37	chr11	89883721	89883721	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagagagatgggcatcaaCtgtactgggaagattgttat	13	4	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89883721	T	T	89883721	2	4	206	1	0	0	0	0	0	0	0	1	10222	564	20	4		4	NAALAD2	11	89883721	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	345976	89883721	45122795	587	161770											
FAT3	120114	broad.mit.edu	37	chr11	92430621	92430621	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttctggaggtaagcgcaTagagggaactgaaattcatt	11	5	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92430621	A	A	92430621	1	1	206	0	1	0	0	0	0	0	0	0	5748	1421	49	5		5	FAT3	11	92430621	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2546900	92430621	42575895	588	161771											
FAT3	120114	broad.mit.edu	37	chr11	92507263	92507263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgggacaattgtcatcGcaaaacctttggatgcagag	12	7	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92507263	T	T	92507263	3	4	206	1	0	0	0	0	1	0	0	0	5748	1087	38	3	4274	3	FAT3	11	92507263	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	76642	92507263	42499253	589	161772											
FUT4	2526	broad.mit.edu	37	chr11	94278921	94278921	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctggaagcgacccaggGgaggccaagttgtcagcttt	13	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94278921	T	T	94278921	1	4	206	0	1	0	0	0	0	0	0	0	6166	1247	43	2		2	FUT4	11	94278921	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	1771658	94278921	40727595	590	161773											
BIRC2	329	broad.mit.edu	37	chr11	102248146	102248146	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtgcctaaattgtttgtAgggttggttattagtgacta	11	3	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102248146	G	G	102248146	1	3	206	0	1	0	0	0	0	0	0	0	1441	435	15	5		5	BIRC2	11	102248146	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	7969225	102248146	32758370	591	161774											
TMEM123	114908	broad.mit.edu	37	chr11	102269667	102269667	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactttgttttgttttttctGtcaaaactacttatgttcct	4	7	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102269667	C	C	102269667	1	2	206	0	1	0	0	0	0	0	0	0	16159	1392	48	4		4	TMEM123	11	102269667	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	21521	102269667	32736849	592	161775											
MMP8	4317	broad.mit.edu	37	chr11	102592107	102592107	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttaattcagaagctgtgtGtggacataatcttgattaac	10	5	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102592107	T	T	102592107	1	4	206	0	1	0	0	0	0	0	0	0	9762	1392	48	3		3	MMP8	11	102592107	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	322440	102592107	32414409	593	161776											
DYNC2H1	79659	broad.mit.edu	37	chr11	103327091	103327091	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agctacaaattaaggtactaGactaattttagatcttggaa	7	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103327091	T	T	103327091	1	4	206	0	1	0	0	0	0	0	0	0	4886	957	33	3		3	DYNC2H1	11	103327091	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	734984	103327091	31679425	594	161777											
HSPB2	3316	broad.mit.edu	37	chr11	111784040	111784040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagtgtggcctccctccCgttccctactcctcctgact	6	19	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111784040	A	A	111784040	1	1	206	0	1	0	0	0	0	0	0	0	7489	667	23	1		1	HSPB2	11	111784040	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	8456949	111784040	23222476	595	161778											
NCAM1	4684	broad.mit.edu	37	chr11	113102506	113102506	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactcccagtccatgtaccTtgaagtgcaatgtaaggaat	10	9	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113102506	A	A	113102506	3	1	206	1	0	0	0	0	1	0	0	0	10297	1609	56	5	1268	5	NCAM1	11	113102506	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1318466	113102506	21904010	596	161779											
ZW10	9183	broad.mit.edu	37	chr11	113614613	113614613	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgatacggcatgtgggCaaggaaaaggaatgttggtc	14	6	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113614613	A	A	113614613	3	1	206	1	0	0	0	0	1	0	0	0	18376	709	25	3	945	3	ZW10	11	113614613	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	512107	113614613	21391903	597	161780											
USP28	57646	broad.mit.edu	37	chr11	113700007	113700007	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaacactcgtctaagttgCgataaccgtttacctgaaga	7	11	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113700007	T	T	113700007	3	4	206	1	0	0	0	0	1	0	0	0	17185	768	27	4	2326	4	USP28	11	113700007	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	85394	113700007	21306509	598	161781											
DSCAML1	57453	broad.mit.edu	37	chr11	117314471	117314471	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgcgggaggcaggcgGgtggccagttcctcacagct	18	10	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117314471	A	A	117314471	1	1	206	0	1	0	0	0	0	0	0	0	4809	1247	43	4		4	DSCAML1	11	117314471	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3614464	117314471	17692045	599	161782											
HYOU1	10525	broad.mit.edu	37	chr11	118922015	118922015	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcaagaggacggatgcattCtccagcgaagctgatcatag	11	10	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118922015	G	G	118922015	1	3	206	0	1	0	0	0	0	0	0	0	7540	928	32	4		4	HYOU1	11	118922015	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1607544	118922015	16084501	600	161783											
TRIM29	23650	broad.mit.edu	37	chr11	119993598	119993598	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgagagtcactgcacGgactttgggggcccctgggc	16	12	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119993598	A	A	119993598	1	1	206	0	1	0	0	0	0	0	0	0	16627	1131	39	4		4	TRIM29	11	119993598	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1071583	119993598	15012918	601	161784											
ARHGEF12	23365	broad.mit.edu	37	chr11	120348166	120348166	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctctacagaggagataatGatgaagaagatccttcaaaa	8	6	2	6			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120348166	A	A	120348166	3	1	206	1	0	0	0	0	1	0	0	0	899	1290	45	4	3605	4	ARHGEF12	11	120348166	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	354568	120348166	14658350	602	161785											
SORL1	6653	broad.mit.edu	37	chr11	121429318	121429318	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtgatgttctggacagaCtggggagacctgaagcctgg	17	7	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121429318	T	T	121429318	2	4	206	1	0	0	0	0	0	0	0	1	15048	564	20	4		4	SORL1	11	121429318	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1081152	121429318	13577198	603	161786											
HSPA8	3312	broad.mit.edu	37	chr11	122931962	122931962	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcaattatctcgacttttCcgtgctggaaaacacccaca	7	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122931962	T	T	122931962	3	4	206	1	0	0	0	0	1	0	0	0	7485	855	30	4	1901	4	HSPA8	11	122931962	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1502644	122931962	12074554	604	161787											
ROBO3	64221	broad.mit.edu	37	chr11	124738967	124738967	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaaggtgtctacacttgcGtggctcgcaactacctgggg	13	11	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124738967	T	T	124738967	3	4	206	1	0	0	0	0	1	0	0	0	13626	1145	40	3	436	3	ROBO3	11	124738967	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1807005	124738967	10267549	605	161788											
ROBO4	54538	broad.mit.edu	37	chr11	124755170	124755170	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagggtagaggtgtctgtGggaggttgaccttcagcccc	18	8	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124755170	T	T	124755170	1	4	206	0	1	0	0	0	0	0	0	0	13627	1363	47	2		2	ROBO4	11	124755170	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	16203	124755170	10251346	606	161789											
ST14	6768	broad.mit.edu	37	chr11	130064465	130064465	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctccaggcctcaggctgcAgagccctcgtccgcctgctc	11	18	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130064465	T	T	130064465	1	4	206	0	1	0	0	0	0	0	0	0	15329	203	7	5		5	ST14	11	130064465	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	5309295	130064465	4942051	607	161790											
NTM	50863	broad.mit.edu	37	chr11	132180299	132180299	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacattaatggatttcagcTacgtttttaatgtcaccatg	6	7	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132180299	A	A	132180299	1	1	206	0	1	0	0	0	0	0	0	0	10794	1537	53	5		5	NTM	11	132180299	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2115834	132180299	2826217	608	161791											
SPATA19	219938	broad.mit.edu	37	chr11	133715206	133715206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaagtgcagcagggtccCacagggggagaagatatatg	15	6	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133715206	A	A	133715206	1	1	206	0	1	0	0	0	0	0	0	0	15120	609	21	2		2	SPATA19	11	133715206	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1534907	133715206	1291310	609	161792											
IGSF9B	22997	broad.mit.edu	37	chr11	133789800	133789800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggccagagtggtgaagcCcatggcgggccggtagctgg	20	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133789800	A	A	133789800	3	1	206	1	0	0	0	0	1	0	0	0	7676	623	22	2	237	2	IGSF9B	11	133789800	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	74594	133789800	1216716	610	161793											
JAM3	83700	broad.mit.edu	37	chr11	133993906	133993906	+	Intron	DEL	C	-	-													caaccagcacaggtgcccttCccaatcccgcaacacaaggc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	133993906	-	-	133993906	6	5	206	0	1	1	0	1	0	0	0	0	8014	870	30	0		0	JAM3	11	133993906	Intron	DEL	C	TCGA-73-4666-01A-01D-1265-08	204106	133993906	1012610	611	161794											
VWF	7450	broad.mit.edu	37	chr12	6131424	6131424	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggattccttcaccctacCtcacctccccaagcctcagg	7	19	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6131424	A	A	6131424	1	1	206	0	1	0	0	0	0	0	0	0	17373	696	24	2		2	VWF	12	6131424	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08		6131424	127720471	612	161795											
AEBP2	121536	broad.mit.edu	37	chr12	19609424	19609424	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagctttttaccaacatGgcgatccatcttttccttca	4	13	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19609424	T	T	19609424	1	4	206	0	1	0	0	0	0	0	0	0	350	1363	47	2		2	AEBP2	12	19609424	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	13478000	19609424	114242471	613	161796											
C12orf72	254013	broad.mit.edu	37	chr12	31814989	31814989	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttccctgtggccagtgTccctggagaggagctggaag	15	9	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31814989	G	G	31814989	3	3	206	1	0	0	0	0	1	0	0	0	1726	1673	58	5	104	5	C12orf72	12	31814989	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	12205565	31814989	102036906	614	161797											
C12orf35	55196	broad.mit.edu	37	chr12	32137950	32137950	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taagaagcatagttctttggGacagtcattatcaccagaaa	8	7	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32137950	C	C	32137950	3	2	206	1	0	0	0	0	1	0	0	0	1695	1174	41	4	4063	4	C12orf35	12	32137950	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	322961	32137950	101713945	615	161798											
SCN8A	6334	broad.mit.edu	37	chr12	52200170	52200170	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcgtctgatcaaaggcGccaaagggattcgtaccctg	11	11	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52200170	A	A	52200170	3	1	206	1	0	0	0	0	1	0	0	0	14037	1087	38	4	5002	4	SCN8A	12	52200170	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	20062220	52200170	81651725	616	161799											
KRT85	3891	broad.mit.edu	37	chr12	52760934	52760934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgggtccgcacacgcCcccggagcggtagccgaagc	17	15	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52760934	A	A	52760934	3	1	206	1	0	0	0	0	1	0	0	0	8570	623	22	2	1303	2	KRT85	12	52760934	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	560764	52760934	81090961	617	161800											
KRT74	121391	broad.mit.edu	37	chr12	52966953	52966953	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgtggctcacagacctactCtccttccctaatggtgagga	9	14	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52966953	A	A	52966953	1	1	206	0	1	0	0	0	0	0	0	0	8558	928	32	3		3	KRT74	12	52966953	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	206019	52966953	80884942	618	161801											
KRT2	3849	broad.mit.edu	37	chr12	53040627	53040627	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcacgcagcagccgcgccaAgtcctccttggcctgctgca	11	17	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53040627	G	G	53040627	2	3	206	1	0	0	0	0	0	0	0	1	8528	69	3	5		5	KRT2	12	53040627	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	73674	53040627	80811268	619	161802											
KRT1	3848	broad.mit.edu	37	chr12	53073922	53073922	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagatgcttttactgccacCaaggttaacaagactccgac	9	11	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53073922	T	T	53073922	3	4	206	1	0	0	0	0	1	0	0	0	8518	594	21	4	1759	4	KRT1	12	53073922	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	33295	53073922	80777973	620	161803											
NCKAP1L	3071	broad.mit.edu	37	chr12	54902009	54902009	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctcacttttagcccctgaCttttgttccaattttcttat	4	11	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54902009	G	G	54902009	1	3	206	0	1	0	0	0	0	0	0	0	10317	580	20	4		4	NCKAP1L	12	54902009	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1828087	54902009	78949886	621	161804											
GPR182	11318	broad.mit.edu	37	chr12	57389008	57389008	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccaatgtcagtgaaaccCagctgggggcctggcccctc	12	15	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57389008	A	A	57389008	2	1	206	1	0	0	0	0	0	0	0	1	6742	581	21	2		2	GPR182	12	57389008	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	2486999	57389008	76462887	622	161805											
PTPRR	5801	broad.mit.edu	37	chr12	71054797	71054797	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcatgagctgtaggagGggctgggcactgtctggagt	17	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71054797	T	T	71054797	2	4	206	1	0	0	0	0	0	0	0	1	12918	1219	43	2		2	PTPRR	12	71054797	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	13665789	71054797	62797098	623	161806											
NAV3	89795	broad.mit.edu	37	chr12	78513629	78513629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctttgtcaggttcccCcaaatccagccccacctctg	6	16	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78513629	A	A	78513629	3	1	206	1	0	0	0	0	1	0	0	0	10279	623	22	2	3711	2	NAV3	12	78513629	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	7458832	78513629	55338266	624	161807											
ANO4	121601	broad.mit.edu	37	chr12	101477524	101477524	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatccaatttctggaaaGccagaaccttatcaagcatt	6	9	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101477524	T	T	101477524	3	4	206	1	0	0	0	0	1	0	0	0	699	962	34	3	1413	3	ANO4	12	101477524	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	22963895	101477524	32374371	625	161808											
UTP20	27340	broad.mit.edu	37	chr12	101682691	101682691	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatgtagtatgtatttatTacaattatatgattaatgaa	6	2	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101682691	G	G	101682691	1	3	206	0	1	0	0	0	0	0	0	0	17226	1769	61	5		5	UTP20	12	101682691	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	205167	101682691	32169204	626	161809											
STAB2	55576	broad.mit.edu	37	chr12	104100609	104100609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctttggcccccaatgcCagccctgcccagggaatgcc	10	17	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104100609	A	A	104100609	3	1	206	1	0	0	0	0	1	0	0	0	15356	595	21	2	4186	2	STAB2	12	104100609	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2417918	104100609	29751286	627	161810											
POLR3B	55703	broad.mit.edu	37	chr12	106831485	106831485	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatttcttacatgagaGtctggttgaatatttagatg	10	3	2	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106831485	A	A	106831485	3	1	206	1	0	0	0	0	1	0	0	0	12324	1029	36	4	1953	4	POLR3B	12	106831485	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	2730876	106831485	27020410	628	161811											
RFX4	5992	broad.mit.edu	37	chr12	107082943	107082943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtctggtaggctgagccGgtgttaggtgaattgcatcc	16	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107082943	T	T	107082943	1	4	206	0	1	0	0	0	0	0	0	0	13373	1131	39	1		1	RFX4	12	107082943	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	251458	107082943	26768952	629	161812											
MYO1H	283446	broad.mit.edu	37	chr12	109853423	109853423	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggtcacatactgcaccaAgggtgagtggccgtggggta	16	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109853423	T	T	109853423	3	4	206	1	0	0	0	0	1	0	0	0	10169	72	3	5	1601	5	MYO1H	12	109853423	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	2770480	109853423	23998472	630	161813											
PLBD2	196463	broad.mit.edu	37	chr12	113810346	113810346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcatgagcaaggactcaGgtggccacaccagcagcctc	11	14	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113810346	T	T	113810346	1	4	206	0	1	0	0	0	0	0	0	0	12121	1015	35	2		2	PLBD2	12	113810346	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3956923	113810346	20041549	631	161814											
PLBD2	196463	broad.mit.edu	37	chr12	113824835	113824835	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacgggagcccccgggcccaGatcttccggcggaaccagtc	14	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113824835	C	C	113824835	3	2	206	1	0	0	0	0	1	0	0	0	12121	933	33	4	1418	4	PLBD2	12	113824835	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	14489	113824835	20027060	632	161815											
TBX3	6926	broad.mit.edu	37	chr12	115111974	115111974	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagaaggatccatacctgaGaggccaggacgtgctgctgg	15	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115111974	A	A	115111974	3	1	206	1	0	0	0	0	1	0	0	0	15781	942	33	4	473	4	TBX3	12	115111974	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1287139	115111974	18739921	633	161816											
WDR66	144406	broad.mit.edu	37	chr12	122413047	122413047	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaccctaactgtatctgtGctgtgatacccttcagaggg	11	10	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122413047	T	T	122413047	1	4	206	0	1	0	0	0	0	0	0	0	17444	1334	46	3		3	WDR66	12	122413047	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	7301073	122413047	11438848	634	161817											
RSRC2	65117	broad.mit.edu	37	chr12	123005895	123005895	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaccagacactttataagtAttttaaagtacctattcact	3	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123005895	T	T	123005895	1	4	206	0	1	0	0	0	0	0	0	0	13826	464	16	5		5	RSRC2	12	123005895	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	592848	123005895	10846000	635	161818											
KNTC1	9735	broad.mit.edu	37	chr12	123072257	123072257	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcctttatcactctgcaGgagatggccttgttttacct	7	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123072257	T	T	123072257	5	4	206	1	0	0	0	0	0	0	1	0	8499	1014	35	2	3880	2	KNTC1	12	123072257	Splice_Site	SNP	G	TCGA-73-4666-01A-01D-1265-08	66362	123072257	10779638	636	161819											
DDX55	57696	broad.mit.edu	37	chr12	124102988	124102988	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagacccagtgttgccataCtttgctaccagattaggatt	9	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124102988	A	A	124102988	1	1	206	0	1	0	0	0	0	0	0	0	4406	580	20	3		3	DDX55	12	124102988	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1030731	124102988	9748907	637	161820											
TMEM132D	121256	broad.mit.edu	37	chr12	129822193	129822193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttaccatagccagcggcaCaactccaatcaagtcctttg	7	14	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129822193	A	A	129822193	3	1	206	1	0	0	0	0	1	0	0	0	16170	478	17	3	2038	3	TMEM132D	12	129822193	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5719205	129822193	4029702	638	161821											
LATS2	26524	broad.mit.edu	37	chr13	21620119	21620119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatctcttgcagtcgctgcCggctatttccagaataagtc	9	11	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21620119	A	A	21620119	3	1	206	1	0	0	0	0	1	0	0	0	8719	652	23	1	3247	1	LATS2	13	21620119	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08		21620119	93549759	639	161822											
SACS	26278	broad.mit.edu	37	chr13	23907731	23907731	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttttgtaagtacgtagcaTgttccaaattttccaatgct	6	8	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23907731	A	A	23907731	2	1	206	1	0	0	0	0	0	0	0	1	13915	1451	51	5		5	SACS	13	23907731	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	2287612	23907731	91262147	640	161823											
PARP4	143	broad.mit.edu	37	chr13	25023800	25023800	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tattcctatttcttagtctcGgaagaataagagatttccaa	6	7	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25023800	C	C	25023800	1	2	206	0	1	0	0	0	0	0	0	0	11557	1131	39	4		4	PARP4	13	25023800	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1116069	25023800	90146078	641	161824											
PARP4	143	broad.mit.edu	37	chr13	25052075	25052075	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagatgttttcataaaagcAtgtttgctaatttagaaaat	7	4	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25052075	G	G	25052075	1	3	206	0	1	0	0	0	0	0	0	0	11557	232	8	5		5	PARP4	13	25052075	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	28275	25052075	90117803	642	161825											
PABPC3	5042	broad.mit.edu	37	chr13	25670983	25670983	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctttggcaagttcgggcCcgccttaagtgtgaaagtaa	11	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25670983	A	A	25670983	3	1	206	1	0	0	0	0	1	0	0	0	11459	623	22	2	649	2	PABPC3	13	25670983	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	618908	25670983	89498895	643	161826											
FLT3	2322	broad.mit.edu	37	chr13	28609551	28609551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatactctcctgtaaaattcCccaagtaaaagtcagcgatg	6	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28609551	A	A	28609551	1	1	206	0	1	0	0	0	0	0	0	0	6000	638	22	2		2	FLT3	13	28609551	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2938568	28609551	86560327	644	161827											
MTUS2	23281	broad.mit.edu	37	chr13	29599385	29599385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaagagcaagcagctctGtagctgcagtcgggagcctg	15	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29599385	T	T	29599385	3	4	206	1	0	0	0	0	1	0	0	0	10060	1377	48	3	582	3	MTUS2	13	29599385	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	989834	29599385	85570493	645	161828											
C13orf33	84935	broad.mit.edu	37	chr13	31480616	31480616	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgggggctgtaggcaccgGacggaagcaggcggtgtgag	21	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31480616	T	T	31480616	1	4	206	0	1	0	0	0	0	0	0	0	1740	1189	41	3		3	C13orf33	13	31480616	5'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	1881231	31480616	83689262	646	161829											
STARD13	90627	broad.mit.edu	37	chr13	33741717	33741717	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgagcgtattgcgggaacCcggcagcacggagccagtca	14	12	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33741717	G	G	33741717	3	3	206	1	0	0	0	0	1	0	0	0	15374	623	22	4	3181	4	STARD13	13	33741717	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2261101	33741717	81428161	647	161830											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37679171	37679171	+	Frame_Shift_Del	DEL	G	-	-													ctgaccataccagtgcatgtGggggatgccaaccccacctt							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37679171	-	-	37679171	7	5	206	1	0	1	0	1	0	0	0	0	3985	1348	47	0	794	0	CSNK1A1L	13	37679171	Frame_Shift_Del	DEL	G	TCGA-73-4666-01A-01D-1265-08	3937454	37679171	77490707	648	161831											
EPSTI1	94240	broad.mit.edu	37	chr13	43474465	43474465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctgtgttcagtctggtGgattttggctctttcttgct	10	10	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43474465	T	T	43474465	3	4	206	1	0	0	0	0	1	0	0	0	5240	1348	47	2	419	2	EPSTI1	13	43474465	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	5795294	43474465	71695413	649	161832											
PCDH17	27253	broad.mit.edu	37	chr13	58299073	58299073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaagcagcccaaccaaggCgtgcatcgagccttgcacct	9	15	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58299073	A	A	58299073	3	1	206	1	0	0	0	0	1	0	0	0	11606	768	27	3	3139	3	PCDH17	13	58299073	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	14824608	58299073	56870805	650	161833											
COMMD6	170622	broad.mit.edu	37	chr13	76112016	76112016	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttccgcttccacgtcctgcCcctagcggcctggcgcatgg	11	18	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76112016	G	G	76112016	1	3	206	0	1	0	0	0	0	0	0	0	3752	638	22	4		4	COMMD6	13	76112016	5'Flank	SNP	C	TCGA-73-4666-01A-01D-1265-08	17812943	76112016	39057862	651	161834											
SLITRK1	114798	broad.mit.edu	37	chr13	84455381	84455381	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagccattgttttccatgtGcaaactaaccgcattataaa	5	10	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84455381	T	T	84455381	3	4	206	1	0	0	0	0	1	0	0	0	14856	1319	46	3	1832	3	SLITRK1	13	84455381	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	8343365	84455381	30714497	652	161835											
GPC6	10082	broad.mit.edu	37	chr13	93879811	93879811	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggagctgcggagaggtccgCcaggcgtacggtgccaaggg	19	11	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93879811	T	T	93879811	2	4	206	1	0	0	0	0	0	0	0	1	6667	726	26	4		4	GPC6	13	93879811	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	9424430	93879811	21290067	653	161836											
IPO5	3843	broad.mit.edu	37	chr13	98641334	98641334	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgaggatggcaataaccAgtggcccgaaggtttgaagt	14	6	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98641334	T	T	98641334	3	4	206	1	0	0	0	0	1	0	0	0	7866	188	7	5	455	5	IPO5	13	98641334	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	4761523	98641334	16528544	654	161837											
IPO5	3843	broad.mit.edu	37	chr13	98668954	98668954	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatatactttttaatccatAtgagtgtttatgtgtatgtt	6	3	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98668954	G	G	98668954	1	3	206	0	1	0	0	0	0	0	0	0	7866	464	16	5		5	IPO5	13	98668954	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	27620	98668954	16500924	655	161838											
DOCK9	23348	broad.mit.edu	37	chr13	99481647	99481647	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcgtgctggcataggattTggccaggctgtactggaggt	18	7	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99481647	A	A	99481647	4	1	206	1	0	0	0	0	0	1	0	0	4734	1821	63	5	1448	5	DOCK9	13	99481647	Nonsense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	812693	99481647	15688231	656	161839											
DOCK9	23348	broad.mit.edu	37	chr13	99515237	99515237	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctggcttccccgggacctGatataggctgagttaatgtg	12	10	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99515237	C	C	99515237	1	2	206	0	1	0	0	0	0	0	0	0	4734	1305	45	4		4	DOCK9	13	99515237	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	33590	99515237	15654641	657	161840											
TM9SF2	9375	broad.mit.edu	37	chr13	100204634	100204634	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttagctgcagaaattagcAtatgccatctcaaaagatac	6	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100204634	G	G	100204634	1	3	206	0	1	0	0	0	0	0	0	0	16101	232	8	5		5	TM9SF2	13	100204634	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	689397	100204634	14965244	658	161841											
FGF14	2259	broad.mit.edu	37	chr13	102454356	102454356	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatttagcagaatttttcaaGatgtgctccgacaggtgaaa	9	6	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102454356	T	T	102454356	1	4	206	0	1	0	0	0	0	0	0	0	5900	957	33	3		3	FGF14	13	102454356	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2249722	102454356	12715522	659	161842											
POTEG	404785	broad.mit.edu	37	chr14	19553590	19553590	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tctgctatgaagacactcagGagcaagatgggcaagtggtg	14	7	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19553590	C	C	19553590	3	2	206	1	0	0	0	0	1	0	0	0	12362	1165	41	4	176	4	POTEG	14	19553590	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08		19553590	87795950	660	161843											
OR4K17	390436	broad.mit.edu	37	chr14	20586105	20586106	+	Nonsense_Mutation	DNP	GC	AA	AA													ttgcttgtagtgacctcatgGctcttgggtctccttcactc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20586106	AA	AA	20586105	4	1	206	1	0	0	0	0	0	1	0	0	11165	1212	42	4	542	4	OR4K17	14	20586105	Nonsense_Mutation	DNP	GC	TCGA-73-4666-01A-01D-1265-08	1032515	20586105	86763435	661	161844											
OR10G2	26534	broad.mit.edu	37	chr14	22102444	22102444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtctcaatactgcgcggatGtcacagataaagtaatccac	8	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22102444	A	A	22102444	2	1	206	1	0	0	0	0	0	0	0	1	10993	1368	48	4		4	OR10G2	14	22102444	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	1516339	22102444	85247096	662	161845											
LRRC16B	90668	broad.mit.edu	37	chr14	24524177	24524177	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catggcatagcaagaaccaaGagcactggcacataaagtga	10	9	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24524177	C	C	24524177	1	2	206	0	1	0	0	0	0	0	0	0	9059	957	33	4		4	LRRC16B	14	24524177	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2421733	24524177	82825363	663	161846											
AKAP6	9472	broad.mit.edu	37	chr14	33046386	33046386	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atgaagccatggaaactacaGaaaattggactccccctaaa	7	10	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33046386	T	T	33046386	4	4	206	1	0	0	0	0	0	1	0	0	455	943	33	3	2421	3	AKAP6	14	33046386	Nonsense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	8522209	33046386	74303154	664	161847											
AKAP6	9472	broad.mit.edu	37	chr14	33293096	33293096	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctagcacttgaacaaaacgGaacagaggaaaatgcttcta	8	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33293096	T	T	33293096	3	4	206	1	0	0	0	0	1	0	0	0	455	1174	41	3	6123	3	AKAP6	14	33293096	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	246710	33293096	74056444	665	161848											
FBXO33	254170	broad.mit.edu	37	chr14	39870542	39870542	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atattgcctggatataagatCaacaatagcccctgaaacac	6	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39870542	G	G	39870542	3	3	206	1	0	0	0	0	1	0	0	0	5800	826	29	4	441	4	FBXO33	14	39870542	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	6577446	39870542	67478998	666	161849											
SDCCAG1	9147	broad.mit.edu	37	chr14	50252225	50252225	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaccaatgtttaaataTattctttactacttaatttt	3	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50252225	C	C	50252225	1	2	206	0	1	0	0	0	0	0	0	0	14070	1421	49	5		5	SDCCAG1	14	50252225	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	10381683	50252225	57097315	667	161850											
TXNDC16	57544	broad.mit.edu	37	chr14	52923870	52923870	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatccttttaggtagtttccTgcttcactaaaatcttcttt	4	9	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52923870	A	A	52923870	2	1	206	1	0	0	0	0	0	0	0	1	16921	1567	55	5		5	TXNDC16	14	52923870	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	2671645	52923870	54425670	668	161851											
SPTB	6710	broad.mit.edu	37	chr14	65266574	65266574	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggacagtgatggtctgctCgatccaggtgagcaggtccg	15	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65266574	A	A	65266574	4	1	206	1	0	0	0	0	0	1	0	0	15236	893	31	3	6212	3	SPTB	14	65266574	Nonsense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	12342704	65266574	42082966	669	161852											
ZFYVE26	23503	broad.mit.edu	37	chr14	68219064	68219064	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgggagggagtgtacctgGggcggaattctcttgaacgc	16	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68219064	A	A	68219064	2	1	206	1	0	0	0	0	0	0	0	1	17794	1219	43	4		4	ZFYVE26	14	68219064	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	2952490	68219064	39130476	670	161853											
PCNX	22990	broad.mit.edu	37	chr14	71513627	71513627	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttttctttctcatcacaTtgacaaactatacatttgat	2	8	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71513627	C	C	71513627	1	2	206	0	1	0	0	0	0	0	0	0	11685	1508	52	5		5	PCNX	14	71513627	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	3294563	71513627	35835913	671	161854											
RGS6	9628	broad.mit.edu	37	chr14	72924983	72924983	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgttcttacagttgaAgcaatacacttggggagcct	10	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72924983	C	C	72924983	3	2	206	1	0	0	0	0	1	0	0	0	13418	69	3	5	254	5	RGS6	14	72924983	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1411356	72924983	34424557	672	161855											
DCAF4	26094	broad.mit.edu	37	chr14	73421133	73421133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgaccaacgtggtgacggGacaccggcagtcctttggga	15	10	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73421133	T	T	73421133	3	4	206	1	0	0	0	0	1	0	0	0	4303	1174	41	3	988	3	DCAF4	14	73421133	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	496150	73421133	33928407	673	161856											
PAPLN	89932	broad.mit.edu	37	chr14	73717768	73717768	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccgacaaggggcagttgCctgcccccttccttgcctgt	11	15	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73717768	T	T	73717768	1	4	206	0	1	0	0	0	0	0	0	0	11522	754	26	4		4	PAPLN	14	73717768	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	296635	73717768	33631772	674	161857											
LTBP2	4053	broad.mit.edu	37	chr14	75022153	75022154	+	Intron	DEL	AA	-	-													gggggaagccaaggtgggagAagagagttctagaggccctg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75022154	-	-	75022153	6	5	206	0	1	1	0	1	0	0	0	0	9161	261	9	0		0	LTBP2	14	75022153	Intron	DEL	AA	TCGA-73-4666-01A-01D-1265-08	1304385	75022153	32327387	675	161858											
KCNK13	56659	broad.mit.edu	37	chr14	90650865	90650865	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggtcagcagccagaacGcccactatgagagccaaggc	11	14	1	2	rs115329697	byFrequency;by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90650865	A	A	90650865	3	1	206	1	0	0	0	0	1	0	0	0	8131	1087	38	4	751	4	KCNK13	14	90650865	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	15628712	90650865	16698675	676	161859											
TTC7B	145567	broad.mit.edu	37	chr14	91076937	91076937	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacacttgagaaagacactGgagcaatgcacctcggttga	10	9	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91076937	A	A	91076937	1	1	206	0	1	0	0	0	0	0	0	0	16839	1363	47	4		4	TTC7B	14	91076937	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	426072	91076937	16272603	677	161860											
CATSPERB	79820	broad.mit.edu	37	chr14	92054420	92054420	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatattttctggcacagtgtGttctaaaaatacataaaaca	5	6	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92054420	A	A	92054420	3	1	206	1	0	0	0	0	1	0	0	0	2717	1377	48	4	403	4	CATSPERB	14	92054420	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	977483	92054420	15295120	678	161861											
PRIMA1	145270	broad.mit.edu	37	chr14	94203694	94203694	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaccagctttcctcagtGgggcaagaggtagagttggg	15	9	1	2	rs140716518	byFrequency	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94203694	T	T	94203694	2	4	206	1	0	0	0	0	0	0	0	1	12598	1335	47	2		2	PRIMA1	14	94203694	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	2149274	94203694	13145846	679	161862											
SERPINA5	5104	broad.mit.edu	37	chr14	95053860	95053861	+	Missense_Mutation	DNP	GG	TT	TT													ctttacctttgacctctacaGggccttggcttccgctgccc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	95053861	TT	TT	95053860	3	4	206	1	0	0	0	0	1	0	0	0	14205	1000	35	2	163	2	SERPINA5	14	95053860	Missense_Mutation	DNP	GG	TCGA-73-4666-01A-01D-1265-08	850166	95053860	12295680	680	161863											
SERPINA3	12	broad.mit.edu	37	chr14	95088697	95088697	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagataggtgagctctacCtgccaaagttttccatctcg	10	10	2	2	rs144438452		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95088697	G	G	95088697	3	3	206	1	0	0	0	0	1	0	0	0	14203	680	24	4	947	4	SERPINA3	14	95088697	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	34837	95088697	12260843	681	161864											
ATG2B	55102	broad.mit.edu	37	chr14	96779364	96779364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaattggtatgtttcgaaCagctttgtttagtatacaat	7	5	1	0	rs149987857	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96779364	A	A	96779364	1	1	206	0	1	0	0	0	0	0	0	0	1098	493	17	3		3	ATG2B	14	96779364	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1690667	96779364	10570176	682	161865											
AHNAK2	113146	broad.mit.edu	37	chr14	105420473	105420473	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaggagttggctgggcccTgggcttcctctgggccactg	15	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105420473	A	A	105420473	3	1	206	1	0	0	0	0	1	0	0	0	415	1579	55	5	16076	5	AHNAK2	14	105420473	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	8641109	105420473	1929067	683	161866											
GABRB3	2562	broad.mit.edu	37	chr15	26806188	26806188	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtagttgacaaaggcaTactccagaagggccaggaac	11	8	0	2	rs149963014	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26806188	G	G	26806188	3	3	206	1	0	0	0	0	1	0	0	0	6228	1406	49	5	458	5	GABRB3	15	26806188	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08		26806188	75725204	684	161867											
HERC2	8924	broad.mit.edu	37	chr15	28424002	28424002	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggagcaaaggccgccCcgcacaggcctcctggtgct	14	15	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28424002	A	A	28424002	1	1	206	0	1	0	0	0	0	0	0	0	7125	638	22	2		2	HERC2	15	28424002	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1617814	28424002	74107390	685	161868											
HERC2	8924	broad.mit.edu	37	chr15	28457728	28457728	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattaaaggccacggcagggAgctggagaggacacagaagc	15	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28457728	G	G	28457728	3	3	206	1	0	0	0	0	1	0	0	0	7125	318	11	5	7920	5	HERC2	15	28457728	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	33726	28457728	74073664	686	161869											
RYR3	6263	broad.mit.edu	37	chr15	33926924	33926924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataacattgagccatcagaCcaagaactaggtaatgagtt	8	7	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33926924	A	A	33926924	3	1	206	1	0	0	0	0	1	0	0	0	13881	506	18	3	3263	3	RYR3	15	33926924	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5469196	33926924	68604468	687	161870											
AQR	9716	broad.mit.edu	37	chr15	35176875	35176875	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggagacttccgtaacatCtggcaatgtactacctttat	8	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35176875	A	A	35176875	3	1	206	1	0	0	0	0	1	0	0	0	837	913	32	3	1619	3	AQR	15	35176875	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1249951	35176875	67354517	688	161871											
SPTBN5	51332	broad.mit.edu	37	chr15	42145032	42145032	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccactcaccccatagtcgGgcttcagcaggagtccctcc	8	19	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42145032	T	T	42145032	3	4	206	1	0	0	0	0	1	0	0	0	15240	1232	43	2	723	2	SPTBN5	15	42145032	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	6968157	42145032	60386360	689	161872											
ELL3	80237	broad.mit.edu	37	chr15	44066902	44066902	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcaggccttgtagggggcTtggcactaaaggcagagttc	16	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44066902	C	C	44066902	3	2	206	1	0	0	0	0	1	0	0	0	5106	1609	56	5	498	5	ELL3	15	44066902	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1921870	44066902	58464490	690	161873											
SPG11	80208	broad.mit.edu	37	chr15	44876526	44876526	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggcaccacgtcctcctgGgcaagccagtgccctgccaa	11	16	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44876526	A	A	44876526	2	1	206	1	0	0	0	0	0	0	0	1	15159	1219	43	4		4	SPG11	15	44876526	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	809624	44876526	57654866	691	161874											
SEMA6D	80031	broad.mit.edu	37	chr15	48057281	48057281	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgttacgagaacgcccttCagcactgctcaaaaattttc	6	11	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48057281	A	A	48057281	1	1	206	0	1	0	0	0	0	0	0	0	14155	841	29	3		3	SEMA6D	15	48057281	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3180755	48057281	54474111	692	161875											
SLC12A1	6557	broad.mit.edu	37	chr15	48524927	48524927	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacctttccattccaggccCaagtcattcttctggtcatt	5	13	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48524927	A	A	48524927	3	1	206	1	0	0	0	0	1	0	0	0	14495	595	21	2	1105	2	SLC12A1	15	48524927	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	467646	48524927	54006465	693	161876											
CGNL1	84952	broad.mit.edu	37	chr15	57809044	57809044	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcggggactgaaatgcgcGtgaagcttctgcaggaggag	18	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57809044	A	A	57809044	3	1	206	1	0	0	0	0	1	0	0	0	3334	1145	40	4	2500	4	CGNL1	15	57809044	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	9284117	57809044	44722348	694	161877											
APH1B	83464	broad.mit.edu	37	chr15	63597759	63597759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttatctttggttattccaCatgtttaataagcttgctgt	6	7	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63597759	A	A	63597759	1	1	206	0	1	0	0	0	0	0	0	0	774	493	17	3		3	APH1B	15	63597759	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	5788715	63597759	38933633	695	161878											
HERC1	8925	broad.mit.edu	37	chr15	63943546	63943546	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagaaacttggatcactGggtgatcccaggctttcctc	12	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63943546	T	T	63943546	2	4	206	1	0	0	0	0	0	0	0	1	7124	1335	47	2		2	HERC1	15	63943546	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	345787	63943546	38587846	696	161879											
TBC1D21	161514	broad.mit.edu	37	chr15	74173960	74173960	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcgatagagcccatgaCctccacctcccacccccacc	6	21	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74173960	A	A	74173960	1	1	206	0	1	0	0	0	0	0	0	0	15729	522	18	3		3	TBC1D21	15	74173960	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	10230414	74173960	28357432	697	161880											
GOLGA6A	342096	broad.mit.edu	37	chr15	74372872	74372872	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggattcaaacccagaattctTaaccagtacccagcaatctc	5	13	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74372872	A	A	74372872	1	1	206	0	1	0	0	0	0	0	0	0	6621	1769	61	5		5	GOLGA6A	15	74372872	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	198912	74372872	28158520	698	161881											
MAN2C1	4123	broad.mit.edu	37	chr15	75648297	75648297	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagggacagcacttggaaggGagaaaaggtgagcttcaggc	16	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75648297	A	A	75648297	3	1	206	1	0	0	0	0	1	0	0	0	9310	1174	41	4	53	4	MAN2C1	15	75648297	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1275425	75648297	26883095	699	161882											
CHRNB4	1143	broad.mit.edu	37	chr15	78953310	78953310	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagcaggacaagggtggGgtccacatttctttctttcc	10	11	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78953310	T	T	78953310	1	4	206	0	1	0	0	0	0	0	0	0	3424	1247	43	2		2	CHRNB4	15	78953310	5'Flank	SNP	G	TCGA-73-4666-01A-01D-1265-08	3305013	78953310	23578082	700	161883											
CPEB1	64506	broad.mit.edu	37	chr15	83226624	83226624	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaggcgtgatcctctaacTgagggtgctggaaacttgtc	12	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83226624	A	A	83226624	2	1	206	1	0	0	0	0	0	0	0	1	3832	1567	55	5		5	CPEB1	15	83226624	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	4273314	83226624	19304768	701	161884											
ANPEP	290	broad.mit.edu	37	chr15	90328846	90328846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtccccatggatgggacCacaccctgttccagggatag	12	12	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90328846	A	A	90328846	1	1	206	0	1	0	0	0	0	0	0	0	710	609	21	2		2	ANPEP	15	90328846	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	7102222	90328846	12202546	702	161885											
TARSL2	123283	broad.mit.edu	37	chr15	102242330	102242330	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgtgagtgccagcaaaaTaggagagaagaagaagaaat	13	4	0	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102242330	C	C	102242330	1	2	206	0	1	0	0	0	0	0	0	0	15680	1421	49	5		5	TARSL2	15	102242330	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	11913484	102242330	289062	703	161886											
C16orf11	146325	broad.mit.edu	37	chr16	614385	614385	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcccggagcaggtgggcgtCttgggctcccggttcctggg	17	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	614385	A	A	614385	1	1	206	0	1	0	0	0	0	0	0	0	1824	928	32	3		3	C16orf11	16	614385	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08		614385	89740368	704	161887											
TMEM204	79652	broad.mit.edu	37	chr16	1604883	1604883	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggcgcctgccttctggcCacgctggcggcagccatgct	13	15	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1604883	A	A	1604883	2	1	206	1	0	0	0	0	0	0	0	1	16252	581	21	2		2	TMEM204	16	1604883	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	990498	1604883	88749870	705	161888											
TSC2	7249	broad.mit.edu	37	chr16	2126413	2126413	+	Intron	DEL	G	-	-													ctgcagcttgtccctggccaGggggcacccggcaggcctgg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2126413	-	-	2126413	6	5	206	0	1	1	0	1	0	0	0	0	16731	1015	35	0		0	TSC2	16	2126413	Intron	DEL	G	TCGA-73-4666-01A-01D-1265-08	521530	2126413	88228340	706	161889											
MGRN1	23295	broad.mit.edu	37	chr16	4727537	4727537	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccccgtgtccttcagcccCgtcctggcccagagcctgga	10	19	1	1	rs148776960	by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4727537	G	G	4727537	2	3	206	1	0	0	0	0	0	0	0	1	9652	639	23	4		4	MGRN1	16	4727537	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	2601124	4727537	85627216	707	161890											
MGRN1	23295	broad.mit.edu	37	chr16	4731568	4731568	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaactctgacagcgtcccAcctggctacgagcccatctc	8	17	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4731568	C	C	4731568	2	2	206	1	0	0	0	0	0	0	0	1	9652	146	6	5		5	MGRN1	16	4731568	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	4031	4731568	85623185	708	161891											
CIITA	4261	broad.mit.edu	37	chr16	11000871	11000871	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgaggagctggaagcgcaaGatggcttcctgcacagcacg	14	11	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11000871	C	C	11000871	3	2	206	1	0	0	0	0	1	0	0	0	3459	942	33	4	1564	4	CIITA	16	11000871	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	6269303	11000871	79353882	709	161892											
MKL2	57496	broad.mit.edu	37	chr16	14345836	14345836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcttcaatccagaaatGctccgcttccatccctgcaa	6	14	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14345836	T	T	14345836	3	4	206	1	0	0	0	0	1	0	0	0	9695	1319	46	3	2417	3	MKL2	16	14345836	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	3344965	14345836	76008917	710	161893											
XYLT1	64131	broad.mit.edu	37	chr16	17211895	17211895	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactagggggctaggtctcaGaaaggtctaggatccccttt	12	9	2	1	rs3947375		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17211895	T	T	17211895	1	4	206	0	1	0	0	0	0	0	0	0	17590	957	33	3		3	XYLT1	16	17211895	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2866059	17211895	73142858	711	161894											
XYLT1	64131	broad.mit.edu	37	chr16	17221490	17221490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccgagggaaatgcaaaaTacaatgaaatgtgacaagac	11	6	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17221490	A	A	17221490	1	1	206	0	1	0	0	0	0	0	0	0	17590	1421	49	5		5	XYLT1	16	17221490	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	9595	17221490	73133263	712	161895											
ARL6IP1	23204	broad.mit.edu	37	chr16	18809061	18809061	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttaccataaaagaactatgGagtacagaaaattcatagtt	6	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18809061	C	C	18809061	1	2	206	0	1	0	0	0	0	0	0	0	946	1189	41	4		4	ARL6IP1	16	18809061	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1587571	18809061	71545692	713	161896											
ACSM2B	348158	broad.mit.edu	37	chr16	20551983	20551983	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaggccttacctttcttGggtacttgtatggggctgtc	11	9	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20551983	C	C	20551983	3	2	206	1	0	0	0	0	1	0	0	0	184	1348	47	4	119	4	ACSM2B	16	20551983	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1742922	20551983	69802770	714	161897											
DNAH3	55567	broad.mit.edu	37	chr16	21071571	21071571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcctggcatgtgtacccCggttcttgtttaccttgaca	10	11	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21071571	A	A	21071571	1	1	206	0	1	0	0	0	0	0	0	0	4643	667	23	1		1	DNAH3	16	21071571	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	519588	21071571	69283182	715	161898											
ANKS4B	257629	broad.mit.edu	37	chr16	21262123	21262123	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaacagcctgggcagctGgtcgacaccagcctgtgatg	12	13	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21262123	T	T	21262123	2	4	206	1	0	0	0	0	0	0	0	1	691	1335	47	2		2	ANKS4B	16	21262123	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	190552	21262123	69092630	716	161899											
SCNN1G	6340	broad.mit.edu	37	chr16	23223352	23223352	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattcctgggtctcctctttCagatctgccttcattcatgc	6	14	6	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23223352	A	A	23223352	1	1	206	0	1	0	0	0	0	0	0	0	14043	841	29	3		3	SCNN1G	16	23223352	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1961229	23223352	67131401	717	161900											
CACNG3	10368	broad.mit.edu	37	chr16	24268274	24268274	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcggggctgtggaggaccTgctgcctagaaggtatttac	14	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24268274	A	A	24268274	3	1	206	1	0	0	0	0	1	0	0	0	2584	1580	55	5	201	5	CACNG3	16	24268274	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1044922	24268274	66086479	718	161901											
BOLA2	552900	broad.mit.edu	37	chr16	30034902	30034902	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagccttgtcgtggtgcacCcagctgaccctgagggaaat	13	12	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30034902	A	A	30034902	1	1	206	0	1	0	0	0	0	0	0	0	1492	638	22	2		2	BOLA2	16	30034902	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	5766628	30034902	60319851	719	161902											
TRIM72	493829	broad.mit.edu	37	chr16	31230697	31230697	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggagggctccttggacCgcgaggcagagcgtgtacgg	17	11	0	1	rs115885262	byFrequency;by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31230697	A	A	31230697	3	1	206	1	0	0	0	0	1	0	0	0	16670	652	23	1	584	1	TRIM72	16	31230697	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1195795	31230697	59124056	720	161903											
ABCC11	85320	broad.mit.edu	37	chr16	48231969	48231969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctatctttgctgtgtcctGcaacatgtcctggggagaga	12	9	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48231969	T	T	48231969	3	4	206	1	0	0	0	0	1	0	0	0	51	1328	46	3	1977	3	ABCC11	16	48231969	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	17001272	48231969	42122784	721	161904											
NOD2	64127	broad.mit.edu	37	chr16	50744658	50744658	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagccaccctgggcctggAggagctcttcagcacccctg	11	18	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50744658	T	T	50744658	3	4	206	1	0	0	0	0	1	0	0	0	10612	304	11	5	850	5	NOD2	16	50744658	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	2512689	50744658	39610095	722	161905											
MMP2	4313	broad.mit.edu	37	chr16	55523689	55523689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatgtggtgtgcgaccaCagccaactacgatgatgacc	11	10	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55523689	A	A	55523689	3	1	206	1	0	0	0	0	1	0	0	0	9751	478	17	3	1166	3	MMP2	16	55523689	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4779031	55523689	34831064	723	161906											
CES1	1066	broad.mit.edu	37	chr16	55846674	55846674	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctcctggagaagatttcCgtggaaatgttaactcctgc	10	11	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55846674	A	A	55846674	1	1	206	0	1	0	0	0	0	0	0	0	3299	667	23	1		1	CES1	16	55846674	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	322985	55846674	34508079	724	161907											
CES7	221223	broad.mit.edu	37	chr16	55893498	55893498	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cactcgtggttattgactccGatgatggaaggaattgcttt	11	7	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55893498	A	A	55893498	2	1	206	1	0	0	0	0	0	0	0	1	3302	1048	37	4		4	CES7	16	55893498	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	46824	55893498	34461255	725	161908											
GOT2	2806	broad.mit.edu	37	chr16	58752583	58752583	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatctcggctgaacttaaAaaatctttgctaaaagatgg	8	7	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58752583	C	C	58752583	3	2	206	1	0	0	0	0	1	0	0	0	6645	14	1	5	871	5	GOT2	16	58752583	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	2859085	58752583	31602170	726	161909											
NAE1	8883	broad.mit.edu	37	chr16	66850922	66850922	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttatacgttttaggtattcGtccatttgtctaaattggtt	7	5	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66850922	A	A	66850922	4	1	206	1	0	0	0	0	0	1	0	0	10233	1153	40	4	954	4	NAE1	16	66850922	Nonsense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	8098339	66850922	23503831	727	161910											
CDH3	1001	broad.mit.edu	37	chr16	68718741	68718741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcaggtactcaggagctGggctcagtaagcagcacgta	13	9	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68718741	T	T	68718741	1	4	206	0	1	0	0	0	0	0	0	0	3141	1363	47	2		2	CDH3	16	68718741	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1867819	68718741	21636012	728	161911											
MTSS1L	92154	broad.mit.edu	37	chr16	70719722	70719723	+	5'UTR	DNP	GG	AA	AA													ctgggccgggccgcggcggcGgctaggcgcacggagcgcgg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70719723	AA	AA	70719722	1	1	206	0	1	0	0	0	0	0	0	0	10057	1131	39	4		4	MTSS1L	16	70719722	5'UTR	DNP	GG	TCGA-73-4666-01A-01D-1265-08	2000981	70719722	19635031	729	161912											
HYDIN	54768	broad.mit.edu	37	chr16	70926487	70926487	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttatcccgggaactcaagatCccagagaggagactctagat	10	10	2	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70926487	A	A	70926487	1	1	206	0	1	0	0	0	0	0	0	0	7537	870	30	3		3	HYDIN	16	70926487	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	206765	70926487	19428266	730	161913											
ZNRF1	84937	broad.mit.edu	37	chr16	75127341	75127341	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaaggaggacaggtccaGggtctgttctgatggtcatc	14	8	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75127341	T	T	75127341	1	4	206	0	1	0	0	0	0	0	0	0	18340	1015	35	2		2	ZNRF1	16	75127341	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	4200854	75127341	15227412	731	161914											
LDHD	197257	broad.mit.edu	37	chr16	75147476	75147476	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgcgtaccaggcattgTgccgtgctgtccaaagccgg	15	12	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75147476	C	C	75147476	3	2	206	1	0	0	0	0	1	0	0	0	8775	1696	59	5	427	5	LDHD	16	75147476	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	20135	75147476	15207277	732	161915											
GAN	8139	broad.mit.edu	37	chr16	81390512	81390512	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagtgtagcaatataccGctcagccagccgcagcaagg	11	11	1	1	rs138585506		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81390512	T	T	81390512	2	4	206	1	0	0	0	0	0	0	0	1	6294	1074	38	3		3	GAN	16	81390512	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	6243036	81390512	8964241	733	161916											
SPIRE2	84501	broad.mit.edu	37	chr16	89911694	89911694	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttattggggtcccggggaTgctgacaaataacttaactc	11	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89911694	A	A	89911694	1	1	206	0	1	0	0	0	0	0	0	0	15190	1479	51	5		5	SPIRE2	16	89911694	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	8521182	89911694	443059	734	161917											
CAMKK1	84254	broad.mit.edu	37	chr17	3773058	3773058	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtgactcctgttttctGtgtcccagcccagcccaaga	9	13	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3773058	C	C	3773058	1	2	206	0	1	0	0	0	0	0	0	0	2632	1392	48	4		4	CAMKK1	17	3773058	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08		3773058	77422152	735	161918											
XAF1	54739	broad.mit.edu	37	chr17	6673927	6673927	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaccattaaagctgaagtCattttaaaatttgatatatt	5	5	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6673927	G	G	6673927	1	3	206	0	1	0	0	0	0	0	0	0	17546	841	29	4		4	XAF1	17	6673927	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2900869	6673927	74521283	736	161919											
CLEC10A	10462	broad.mit.edu	37	chr17	6979955	6979955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcctttcaagctgctgGctgaaggggagggcagttca	15	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6979955	T	T	6979955	1	4	206	0	1	0	0	0	0	0	0	0	3527	1218	42	3		3	CLEC10A	17	6979955	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	306028	6979955	74215255	737	161920											
YBX2	51087	broad.mit.edu	37	chr17	7193932	7193932	+	Intron	DEL	C	-	-													caacttgcttccccttctttCaggggaagacccctctccag							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7193932	-	-	7193932	6	5	206	0	1	1	0	1	0	0	0	0	17597	841	29	0		0	YBX2	17	7193932	Intron	DEL	C	TCGA-73-4666-01A-01D-1265-08	213977	7193932	74001278	738	161921											
TP53	7157	broad.mit.edu	37	chr17	7577538	7577538	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtgaggatgggcctcCggttcatgccgcccatgcag	15	11	1	2	rs11540652		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7577538	G	G	7577538	3	3	206	1	0	0	0	0	1	0	0	0	16505	652	23	4	547	4	TP53	17	7577538	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	383606	7577538	73617672	739	161922											
DNAH2	146754	broad.mit.edu	37	chr17	7705029	7705029	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgggaactcaggagaatGtgagcccctcctccccacct	9	16	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7705029	A	A	7705029	5	1	206	1	0	0	0	0	0	0	1	0	4642	1391	48	4	9055	4	DNAH2	17	7705029	Splice_Site	SNP	G	TCGA-73-4666-01A-01D-1265-08	127491	7705029	73490181	740	161923											
KDM6B	23135	broad.mit.edu	37	chr17	7749462	7749462	+	Frame_Shift_Del	DEL	C	-	-													ggctgtgtgcaggcattgctCcgggagccagcccagccagg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7749462	-	-	7749462	7	5	206	1	0	1	0	1	0	0	0	0	8208	842	30	0	313	0	KDM6B	17	7749462	Frame_Shift_Del	DEL	C	TCGA-73-4666-01A-01D-1265-08	44433	7749462	73445748	741	161924											
STX8	9482	broad.mit.edu	37	chr17	9281903	9281903	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtccaccatgtttacCcgcctggtttcattgcgaag	8	12	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9281903	A	A	9281903	2	1	206	1	0	0	0	0	0	0	0	1	15469	610	22	2		2	STX8	17	9281903	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1532441	9281903	71913307	742	161925											
MYH13	8735	broad.mit.edu	37	chr17	10243790	10243790	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcttcctgaaccacctGttcccagccccgagttctgg	11	15	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10243790	A	A	10243790	1	1	206	0	1	0	0	0	0	0	0	0	10126	1392	48	4		4	MYH13	17	10243790	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	961887	10243790	70951420	743	161926											
MYH2	4620	broad.mit.edu	37	chr17	10431163	10431163	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcactcagttggtcctctAgagtccggcacattttctct	8	12	4	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10431163	G	G	10431163	3	3	206	1	0	0	0	0	1	0	0	0	10129	420	15	5	2104	5	MYH2	17	10431163	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	187373	10431163	70764047	744	161927											
DNAH9	1770	broad.mit.edu	37	chr17	11572727	11572727	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatttggcaaacatgcggcGcacactcatggagagagtcc	12	10	1	2	rs61745415	byFrequency;by1000genomes	TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11572727	T	T	11572727	3	4	206	1	0	0	0	0	1	0	0	0	4648	1087	38	3	3035	3	DNAH9	17	11572727	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1141564	11572727	69622483	745	161928											
DNAH9	1770	broad.mit.edu	37	chr17	11865411	11865411	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacccccagtcgttcctgacTgccatcatgcagtccacggc	8	17	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11865411	A	A	11865411	2	1	206	1	0	0	0	0	0	0	0	1	4648	1567	55	5		5	DNAH9	17	11865411	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	292684	11865411	69329799	746	161929											
TRIM16	10626	broad.mit.edu	37	chr17	15539485	15539485	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcagcttgctccttctcCtctaagaagagcatcacatt	7	13	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15539485	A	A	15539485	3	1	206	1	0	0	0	0	1	0	0	0	16615	680	24	2	996	2	TRIM16	17	15539485	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3674074	15539485	65655725	747	161930											
DRG2	1819	broad.mit.edu	37	chr17	18002415	18002415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcagggcaggtgtgtgGgaagcagactggagctctgt	20	6	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18002415	T	T	18002415	1	4	206	0	1	0	0	0	0	0	0	0	4802	1247	43	2		2	DRG2	17	18002415	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2462930	18002415	63192795	748	161931											
MYO15A	51168	broad.mit.edu	37	chr17	18027746	18027746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaagccaggggtcagtggGggaggggggtgcccttcaac	18	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18027746	T	T	18027746	1	4	206	0	1	0	0	0	0	0	0	0	10157	1247	43	2		2	MYO15A	17	18027746	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	25331	18027746	63167464	749	161932											
MYO15A	51168	broad.mit.edu	37	chr17	18057337	18057337	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaggccgggctgaaaccAggggtggggttacagccggg	18	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18057337	T	T	18057337	1	4	206	0	1	0	0	0	0	0	0	0	10157	203	7	5		5	MYO15A	17	18057337	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	29591	18057337	63137873	750	161933											
FAM83G	644815	broad.mit.edu	37	chr17	18891758	18891758	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagagagactagggcctgtCagacagtgcagcagtgggga	17	7	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18891758	A	A	18891758	1	1	206	0	1	0	0	0	0	0	0	0	5692	841	29	3		3	FAM83G	17	18891758	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	834421	18891758	62303452	751	161934											
MAP2K3	5606	broad.mit.edu	37	chr17	21201536	21201536	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtctgtcctgctctgctcCcctgcagggctggtgggcct	15	14	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21201536	A	A	21201536	1	1	206	0	1	0	0	0	0	0	0	0	9330	638	22	2		2	MAP2K3	17	21201536	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2309778	21201536	59993674	752	161935											
KCNJ12	3768	broad.mit.edu	37	chr17	21319605	21319605	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcccgcagctcctacctGgccaatgagatcctgtgggg	13	14	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21319605	A	A	21319605	2	1	206	1	0	0	0	0	0	0	0	1	8116	1335	47	4		4	KCNJ12	17	21319605	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	118069	21319605	59875605	753	161936											
NOS2	4843	broad.mit.edu	37	chr17	26093575	26093575	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctgccgagatttgagcCtcatggtgaacacgttcttg	11	9	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26093575	A	A	26093575	3	1	206	1	0	0	0	0	1	0	0	0	10638	681	24	2	1290	2	NOS2	17	26093575	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4773970	26093575	55101635	754	161937											
NOS2	4843	broad.mit.edu	37	chr17	26107668	26107669	+	Intron	DNP	CC	AA	AA													gagtccttgaaggccagcccCctgagtgtcacctgctgctg							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26107669	AA	AA	26107668	1	1	206	0	1	0	0	0	0	0	0	0	10638	638	22	2		2	NOS2	17	26107668	Intron	DNP	CC	TCGA-73-4666-01A-01D-1265-08	14093	26107668	55087542	755	161938											
NF1	4763	broad.mit.edu	37	chr17	29672636	29672636	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaactttggtctccagcatCtctccagcggccacttcttg	8	14	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29672636	A	A	29672636	1	1	206	0	1	0	0	0	0	0	0	0	10451	928	32	3		3	NF1	17	29672636	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3564968	29672636	51522574	756	161939											
ACCN1	40	broad.mit.edu	37	chr17	32364581	32364581	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctatgttccaaacccgctGctgaacgccatttgtccact	7	15	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32364581	C	C	32364581	1	2	206	0	1	0	0	0	0	0	0	0	128	1334	46	4		4	ACCN1	17	32364581	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2691945	32364581	48830629	757	161940											
RAD51L3	5892	broad.mit.edu	37	chr17	33434066	33434066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggcgggaagctgtcaGccctccattggaatctacat	13	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33434066	T	T	33434066	3	4	206	1	0	0	0	0	1	0	0	0	13098	962	34	3	589	3	RAD51L3	17	33434066	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1069485	33434066	47761144	758	161941											
ACACA	31	broad.mit.edu	37	chr17	35453853	35453853	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccttagaggcctgtggactCtttgctggcgagacttgcag	13	11	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35453853	A	A	35453853	1	1	206	0	1	0	0	0	0	0	0	0	106	928	32	3		3	ACACA	17	35453853	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2019787	35453853	45741357	759	161942											
KRT25	147183	broad.mit.edu	37	chr17	38906948	38906948	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttaactttacatataatTgtttcagatttcacatggac	5	7	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38906948	C	C	38906948	1	2	206	0	1	0	0	0	0	0	0	0	8533	1827	63	5		5	KRT25	17	38906948	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	3453095	38906948	42288262	760	161943											
KRT31	3881	broad.mit.edu	37	chr17	39553377	39553377	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcacagaagcaagaaacaCacttctctatcacagacaga	6	12	2	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39553377	T	T	39553377	1	4	206	0	1	0	0	0	0	0	0	0	8538	493	17	4		4	KRT31	17	39553377	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	646429	39553377	41641833	761	161944											
KRT14	3861	broad.mit.edu	37	chr17	39742827	39742827	+	Frame_Shift_Del	DEL	C	-	-													caccaaggccaccaccatatCctcccccaaagccactacca							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39742827	-	-	39742827	7	5	206	1	0	1	0	1	0	0	0	0	8522	855	30	0	1190	0	KRT14	17	39742827	Frame_Shift_Del	DEL	C	TCGA-73-4666-01A-01D-1265-08	189450	39742827	41452383	762	161945											
SLC25A39	51629	broad.mit.edu	37	chr17	42399990	42399990	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggaggcagtgggcccctatCcctggaaggccagtaaaggc	16	11	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42399990	A	A	42399990	1	1	206	0	1	0	0	0	0	0	0	0	14617	870	30	3		3	SLC25A39	17	42399990	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2657163	42399990	38795220	763	161946											
GRN	2896	broad.mit.edu	37	chr17	42426510	42426510	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttaagcagttgccagacgttCcttggtactttgcaggcaga	11	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42426510	T	T	42426510	1	4	206	0	1	0	0	0	0	0	0	0	6870	870	30	4		4	GRN	17	42426510	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	26520	42426510	38768700	764	161947											
PLCD3	113026	broad.mit.edu	37	chr17	43194110	43194110	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcctgctgctccagcccGcagtggttctccagggatag	13	14	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43194110	A	A	43194110	2	1	206	1	0	0	0	0	0	0	0	1	12127	1079	38	4		4	PLCD3	17	43194110	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	767600	43194110	38001100	765	161948											
SP6	80320	broad.mit.edu	37	chr17	45924888	45924888	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtgtgggtctggaggtggCgctgcagctcgtccgagcgc	19	11	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45924888	T	T	45924888	3	4	206	1	0	0	0	0	1	0	0	0	15082	768	27	4	226	4	SP6	17	45924888	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2730778	45924888	35270322	766	161949											
CDK5RAP3	80279	broad.mit.edu	37	chr17	46052493	46052493	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgcctcatgtgggggtGtcctgggctgaatttcctgg	15	10	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46052493	C	C	46052493	1	2	206	0	1	0	0	0	0	0	0	0	3177	1392	48	4		4	CDK5RAP3	17	46052493	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	127605	46052493	35142717	767	161950											
HOXB1	3211	broad.mit.edu	37	chr17	46608074	46608074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgaaggcggctgctgggCgggatagccggagttctgct	19	9	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46608074	A	A	46608074	3	1	206	1	0	0	0	0	1	0	0	0	7366	768	27	3	720	3	HOXB1	17	46608074	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	555581	46608074	34587136	768	161951											
HOXB9	3219	broad.mit.edu	37	chr17	46700538	46700538	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcaaagaaaggaaggggGtgaagggccccagatcaaga	15	6	2	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46700538	T	T	46700538	1	4	206	0	1	0	0	0	0	0	0	0	7375	1276	44	3		3	HOXB9	17	46700538	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	92464	46700538	34494672	769	161952											
MYST2	11143	broad.mit.edu	37	chr17	47873115	47873115	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttttacttttggccacatAgctaggtttctggttcccct	8	10	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47873115	T	T	47873115	1	4	206	0	1	0	0	0	0	0	0	0	10197	435	15	5		5	MYST2	17	47873115	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	1172577	47873115	33322095	770	161953											
PPP1R9B	84687	broad.mit.edu	37	chr17	48222449	48222449	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggtcaaccccagctgtgcGcaagtgacgtggcctcctgg	14	14	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48222449	A	A	48222449	1	1	206	0	1	0	0	0	0	0	0	0	12480	1102	38	4		4	PPP1R9B	17	48222449	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	349334	48222449	32972761	771	161954											
C17orf47	284083	broad.mit.edu	37	chr17	56619965	56619965	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaattggggctgcacctgGgcagtctgcttcttcacata	10	11	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56619965	T	T	56619965	1	4	206	0	1	0	0	0	0	0	0	0	1874	1247	43	2		2	C17orf47	17	56619965	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	8397516	56619965	24575245	772	161955											
TEX14	56155	broad.mit.edu	37	chr17	56642232	56642232	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagcttttcctgttacctCtctgtgtcctctccaagatc	5	15	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56642232	G	G	56642232	3	3	206	1	0	0	0	0	1	0	0	0	15900	912	32	4	313	4	TEX14	17	56642232	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	22267	56642232	24552978	773	161956											
TANC2	26115	broad.mit.edu	37	chr17	61432309	61432309	+	Frame_Shift_Del	DEL	G	-	-													aaatggacaatactacatttGgcaaactcagttctcatctc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61432309	-	-	61432309	7	5	206	1	0	1	0	1	0	0	0	0	15664	1348	47	0	1964	0	TANC2	17	61432309	Frame_Shift_Del	DEL	G	TCGA-73-4666-01A-01D-1265-08	4790077	61432309	19762901	774	161957											
ABCA9	10350	broad.mit.edu	37	chr17	67030038	67030038	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagaaagatacagtgaaTtttaaaagaattaatatggc	7	2	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67030038	A	A	67030038	1	1	206	0	1	0	0	0	0	0	0	0	39	1508	52	5		5	ABCA9	17	67030038	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	5597729	67030038	14165172	775	161958											
SLC39A11	201266	broad.mit.edu	37	chr17	70845835	70845835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctccagctgctgccgCcgggctgtgccagattccct	10	18	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70845835	A	A	70845835	3	1	206	1	0	0	0	0	1	0	0	0	14728	739	26	3	488	3	SLC39A11	17	70845835	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3815797	70845835	10349375	776	161959											
PRCD	768206	broad.mit.edu	37	chr17	74527227	74527227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaccccagagaggatctGggggcaaagggaggaagggg	19	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74527227	T	T	74527227	1	4	206	0	1	0	0	0	0	0	0	0	12554	1363	47	2		2	PRCD	17	74527227	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3681392	74527227	6667983	777	161960											
MGAT5B	146664	broad.mit.edu	37	chr17	74902064	74902064	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggggctcagagctgctgcTcctctctgctgaccctctgt	12	15	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74902064	A	A	74902064	1	1	206	0	1	0	0	0	0	0	0	0	9642	1566	54	5		5	MGAT5B	17	74902064	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	374837	74902064	6293146	778	161961											
TBC1D16	125058	broad.mit.edu	37	chr17	77921563	77921563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggccaagatgggcgccaCcaggtccgacatcccttggg	13	15	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77921563	A	A	77921563	3	1	206	1	0	0	0	0	1	0	0	0	15724	507	18	3	710	3	TBC1D16	17	77921563	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3019499	77921563	3273647	779	161962											
NPTX1	4884	broad.mit.edu	37	chr17	78444626	78444626	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgctcagttgatctggCgacaggcctcgaaggtccac	13	13	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78444626	A	A	78444626	3	1	206	1	0	0	0	0	1	0	0	0	10697	768	27	3	16	3	NPTX1	17	78444626	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	523063	78444626	2750584	780	161963											
AZI1	22994	broad.mit.edu	37	chr17	79182689	79182689	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggcacctgaggtcccGggaaggggccagggttatcc	19	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79182689	C	C	79182689	1	2	206	0	1	0	0	0	0	0	0	0	1245	1131	39	4		4	AZI1	17	79182689	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	738063	79182689	2012521	781	161964											
TSPAN10	83882	broad.mit.edu	37	chr17	79611987	79611987	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagagtctgggtgaatgCggtctcaccctgttcctctt	10	12	4	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79611987	T	T	79611987	1	4	206	0	1	0	0	0	0	0	0	0	16759	783	27	4		4	TSPAN10	17	79611987	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	429298	79611987	1583223	782	161965											
EPB41L3	23136	broad.mit.edu	37	chr18	5438167	5438167	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaattcttatgactctaatcGatggccagaactgccttaac	6	10	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5438167	A	A	5438167	1	1	206	0	1	0	0	0	0	0	0	0	5196	1073	37	4		4	EPB41L3	18	5438167	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08		5438167	72639081	783	161966											
ARHGAP28	79822	broad.mit.edu	37	chr18	6895154	6895154	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtaagtaatgtcagagtGtgcaacgtattgtatacgga	12	5	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6895154	A	A	6895154	1	1	206	0	1	0	0	0	0	0	0	0	879	1392	48	4		4	ARHGAP28	18	6895154	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1456987	6895154	71182094	784	161967											
KIAA0802	23255	broad.mit.edu	37	chr18	8783766	8783766	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggtggaggaggaagccaAcatcttgggccggaagatcg	17	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8783766	G	G	8783766	3	3	206	1	0	0	0	0	1	0	0	0	8264	43	2	5	670	5	KIAA0802	18	8783766	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1888612	8783766	69293482	785	161968											
MC2R	4158	broad.mit.edu	37	chr18	13885062	13885062	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagaacgtccagatgacCgtaagcaccaccacagtgcg	11	13	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13885062	T	T	13885062	2	4	206	1	0	0	0	0	0	0	0	1	9457	639	23	4		4	MC2R	18	13885062	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	5101296	13885062	64192186	786	161969											
CTAGE1	64693	broad.mit.edu	37	chr18	19996925	19996925	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcagcatgaatcagtttctTcaaagctccttttggaggat	9	8	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19996925	A	A	19996925	4	1	206	1	0	0	0	0	0	1	0	0	4026	1792	62	5	1391	5	CTAGE1	18	19996925	Nonsense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	6111863	19996925	58080323	787	161970											
DSC1	1823	broad.mit.edu	37	chr18	28736036	28736036	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttgtggaaatggacccaaCgagttctccatcaatgaagc	10	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28736036	A	A	28736036	2	1	206	1	0	0	0	0	0	0	0	1	4805	523	19	3		3	DSC1	18	28736036	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	8739111	28736036	49341212	788	161971											
DSG4	147409	broad.mit.edu	37	chr18	28985942	28985942	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaagcatgaaaaatctaGtgttttaagtcaatatttgg	8	3	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28985942	A	A	28985942	1	1	206	0	1	0	0	0	0	0	0	0	4819	1044	36	4		4	DSG4	18	28985942	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	249906	28985942	49091306	789	161972											
DSG3	1830	broad.mit.edu	37	chr18	29039177	29039177	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttaccactttcagtttatCtactttcaaatatgagtccc	3	11	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29039177	G	G	29039177	1	3	206	0	1	0	0	0	0	0	0	0	4818	928	32	4		4	DSG3	18	29039177	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	53235	29039177	49038071	790	161973											
C18orf34	374864	broad.mit.edu	37	chr18	30926363	30926363	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatttcctgctttaactctGgacacttttcatcttaaaca	3	12	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30926363	A	A	30926363	3	1	206	1	0	0	0	0	1	0	0	0	1920	1348	47	4	2193	4	C18orf34	18	30926363	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1887186	30926363	47150885	791	161974											
ASXL3	80816	broad.mit.edu	37	chr18	31319913	31319913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgacactgagaagccctacCctgcttcaattccagaactt	6	13	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31319913	A	A	31319913	3	1	206	1	0	0	0	0	1	0	0	0	1072	623	22	2	2587	2	ASXL3	18	31319913	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	393550	31319913	46757335	792	161975											
SYT4	6860	broad.mit.edu	37	chr18	40854041	40854041	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcggggttgcattctccAgatcagaaggactgccaggt	13	10	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40854041	T	T	40854041	3	4	206	1	0	0	0	0	1	0	0	0	15595	188	7	5	936	5	SYT4	18	40854041	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	9534128	40854041	37223207	793	161976											
SLC14A2	8170	broad.mit.edu	37	chr18	43223048	43223048	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaatggcagtggcttaGggggaaggccctgggaagct	17	8	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43223048	T	T	43223048	1	4	206	0	1	0	0	0	0	0	0	0	14510	1015	35	2		2	SLC14A2	18	43223048	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2369007	43223048	34854200	794	161977											
LIPG	9388	broad.mit.edu	37	chr18	47113257	47113257	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacgttccacccaggacaCgttgacatgatgatctccta	7	14	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47113257	T	T	47113257	1	4	206	0	1	0	0	0	0	0	0	0	8896	551	19	4		4	LIPG	18	47113257	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3890209	47113257	30963991	795	161978											
TCF4	6925	broad.mit.edu	37	chr18	52901671	52901671	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtgcccaatttgattcCtgggtttctgccagtgcttc	9	10	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52901671	T	T	52901671	1	4	206	0	1	0	0	0	0	0	0	0	15817	696	24	4		4	TCF4	18	52901671	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	5788414	52901671	25175577	796	161979											
MALT1	10892	broad.mit.edu	37	chr18	56363658	56363658	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctggacagtttgtgaaacTgtgttgccgggcaactggac	15	8	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56363658	C	C	56363658	3	2	206	1	0	0	0	0	1	0	0	0	9294	1580	55	5	447	5	MALT1	18	56363658	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	3461987	56363658	21713590	797	161980											
CDH20	28316	broad.mit.edu	37	chr18	59166738	59166738	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtggtgactcgctgattttCacaaatagcacctcctatat	8	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59166738	A	A	59166738	1	1	206	0	1	0	0	0	0	0	0	0	3136	841	29	3		3	CDH20	18	59166738	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2803080	59166738	18910510	798	161981											
PIGN	23556	broad.mit.edu	37	chr18	59821710	59821710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaaaacagaaaaaacgtGggatacagtctccaatactt	7	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59821710	A	A	59821710	1	1	206	0	1	0	0	0	0	0	0	0	11988	1363	47	4		4	PIGN	18	59821710	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	654972	59821710	18255538	799	161982											
SERPINB8	5271	broad.mit.edu	37	chr18	61653531	61653531	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatttgaagctaactccaGgacaggcagaggacaaacaa	10	8	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61653531	T	T	61653531	1	4	206	0	1	0	0	0	0	0	0	0	14220	1015	35	2		2	SERPINB8	18	61653531	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1831821	61653531	16423717	800	161983											
CD226	10666	broad.mit.edu	37	chr18	67534622	67534622	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcccaggactctgtaaataGatctcttctctctctccttc	4	14	4	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67534622	C	C	67534622	3	2	206	1	0	0	0	0	1	0	0	0	3016	933	33	4	162	4	CD226	18	67534622	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	5881091	67534622	10542626	801	161984											
ZNF516	9658	broad.mit.edu	37	chr18	74091436	74091436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccgtcagggccgggcgcCcacagagcgcagggacctcc	14	17	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74091436	A	A	74091436	3	1	206	1	0	0	0	0	1	0	0	0	18087	624	22	2	874	2	ZNF516	18	74091436	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	6556814	74091436	3985812	802	161985											
CTDP1	9150	broad.mit.edu	37	chr18	77489231	77489231	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagcacttgtgtttttcacGcaacttcctattcaaggaga	8	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77489231	T	T	77489231	1	4	206	0	1	0	0	0	0	0	0	0	4036	1102	38	3		3	CTDP1	18	77489231	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3397795	77489231	588017	803	161986											
PIP5K1C	23396	broad.mit.edu	37	chr19	3639073	3639073	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacacggagactccccgCgcccccactcaggacccagg	9	22	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3639073	A	A	3639073	1	1	206	0	1	0	0	0	0	0	0	0	12036	783	27	3		3	PIP5K1C	19	3639073	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08		3639073	55489910	804	161987											
MATK	4145	broad.mit.edu	37	chr19	3784985	3784985	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcgatggctgggcaggcaGagagagcctccccagaggca	18	11	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3784985	T	T	3784985	1	4	206	0	1	0	0	0	0	0	0	0	9424	957	33	3		3	MATK	19	3784985	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	145912	3784985	55343998	805	161988											
VAV1	7409	broad.mit.edu	37	chr19	6828390	6828390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctccccgcagggagaaggGgaggggcccaggtgacgtct	17	13	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6828390	T	T	6828390	1	4	206	0	1	0	0	0	0	0	0	0	17258	1247	43	2		2	VAV1	19	6828390	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3043405	6828390	52300593	806	161989											
MUC16	94025	broad.mit.edu	37	chr19	9009239	9009239	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggagtgagaataattgggAcagctaggctggctattcta	13	5	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9009239	T	T	9009239	1	4	206	0	1	0	0	0	0	0	0	0	10067	290	10	5		5	MUC16	19	9009239	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	2180849	9009239	50119744	807	161990											
MUC16	94025	broad.mit.edu	37	chr19	9064676	9064676	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgacattgtggactgctcAgggcctgacatggatgttct	13	8	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9064676	G	G	9064676	2	3	206	1	0	0	0	0	0	0	0	1	10067	175	7	5		5	MUC16	19	9064676	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	55437	9064676	50064307	808	161991											
OR1M1	125963	broad.mit.edu	37	chr19	9203890	9203890	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcattcctataacctcCcctttccatacttccagagg	4	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9203890	A	A	9203890	1	1	206	0	1	0	0	0	0	0	0	0	11062	638	22	2		2	OR1M1	19	9203890	5'Flank	SNP	C	TCGA-73-4666-01A-01D-1265-08	139214	9203890	49925093	809	161992											
ZNF121	7675	broad.mit.edu	37	chr19	9677224	9677224	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtatgaattcttacatgttCaactaggtgtgaagaaacag	9	5	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9677224	A	A	9677224	4	1	206	1	0	0	0	0	0	1	0	0	17845	835	29	3	611	3	ZNF121	19	9677224	Nonsense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	473334	9677224	49451759	810	161993											
COL5A3	50509	broad.mit.edu	37	chr19	10087341	10087341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtttaagattagagagGgcactggagctatcaatcac	11	7	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10087341	A	A	10087341	1	1	206	0	1	0	0	0	0	0	0	0	3730	1247	43	4		4	COL5A3	19	10087341	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	410117	10087341	49041642	811	161994											
KEAP1	9817	broad.mit.edu	37	chr19	10597396	10597396	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacagccacgcccacccCactccggcccgatgtcattc	9	19	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10597396	A	A	10597396	3	1	206	1	0	0	0	0	1	0	0	0	8211	594	21	2	71	2	KEAP1	19	10597396	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	510055	10597396	48531587	812	161995											
CARM1	10498	broad.mit.edu	37	chr19	11018634	11018635	+	Intron	DNP	GG	TT	TT													ggagaaacgtcaggacatacGgccatccagaaccttccctc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	11018635	TT	TT	11018634	1	4	206	0	1	0	0	0	0	0	0	0	2681	1131	39	1		1	CARM1	19	11018634	Intron	DNP	GG	TCGA-73-4666-01A-01D-1265-08	421238	11018634	48110349	813	161996											
CYP4F8	11283	broad.mit.edu	37	chr19	15734084	15734084	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacagatgccgtcatccagGagcggcgccgcaccctcact	10	17	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15734084	T	T	15734084	4	4	206	1	0	0	0	0	0	1	0	0	4224	1175	41	3	838	3	CYP4F8	19	15734084	Nonsense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	4715450	15734084	43394899	814	161997											
PLVAP	83483	broad.mit.edu	37	chr19	17471268	17471269	+	Intron	DNP	CC	AA	AA													tgagatcagcctccctccacCctcagtcctggtcctagctt							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	17471269	AA	AA	17471268	1	1	206	0	1	0	0	0	0	0	0	0	12211	638	22	2		2	PLVAP	19	17471268	Intron	DNP	CC	TCGA-73-4666-01A-01D-1265-08	1737184	17471268	41657715	815	161998											
HAPLN4	404037	broad.mit.edu	37	chr19	19381273	19381273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgagtgggcgggccgGgtcaggtgtgggaggggaca	23	6	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19381273	T	T	19381273	1	4	206	0	1	0	0	0	0	0	0	0	7023	1247	43	2		2	HAPLN4	19	19381273	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1910005	19381273	39747710	816	161999											
KIAA0892	23383	broad.mit.edu	37	chr19	19456050	19456050	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaggccccgggcacaccacGtgtctctgatctgagccccc	11	18	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19456050	C	C	19456050	1	2	206	0	1	0	0	0	0	0	0	0	8266	1160	40	4		4	KIAA0892	19	19456050	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	74777	19456050	39672933	817	162000											
ZNF90	7643	broad.mit.edu	37	chr19	20191046	20191046	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgtgctgttgatgagcaCgatgcaattcttcaccaggg	13	9	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20191046	A	A	20191046	1	1	206	0	1	0	0	0	0	0	0	0	18328	551	19	3		3	ZNF90	19	20191046	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	734996	20191046	38937937	818	162001											
ZNF257	113835	broad.mit.edu	37	chr19	22257929	22257929	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcttggtcacaagattgCtgggtctgcactagggtcca	13	9	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22257929	T	T	22257929	1	4	206	0	1	0	0	0	0	0	0	0	17926	812	28	4		4	ZNF257	19	22257929	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2066883	22257929	36871054	819	162002											
ZNF98	148198	broad.mit.edu	37	chr19	22586103	22586103	+	Intron	DEL	A	-	-													aaacagagatctgaaagcatAaactaccaaaaaaaccattc							TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22586103	-	-	22586103	6	5	206	0	1	1	0	1	0	0	0	0	18332	377	13	0		0	ZNF98	19	22586103	Intron	DEL	A	TCGA-73-4666-01A-01D-1265-08	328174	22586103	36542880	820	162003											
MLL4	9757	broad.mit.edu	37	chr19	36218608	36218608	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgctttgcagtgtgggccaGatgggaagcaactgcaccca	13	12	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36218608	A	A	36218608	3	1	206	1	0	0	0	0	1	0	0	0	9716	942	33	4	4378	4	MLL4	19	36218608	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	13632505	36218608	22910375	821	162004											
NPHS1	4868	broad.mit.edu	37	chr19	36322523	36322523	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accctcgggtctccaccctgGcagggaagggtctctcctca	11	16	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36322523	A	A	36322523	1	1	206	0	1	0	0	0	0	0	0	0	10677	1218	42	4		4	NPHS1	19	36322523	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	103915	36322523	22806460	822	162005											
ZNF573	126231	broad.mit.edu	37	chr19	38287028	38287028	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acttttggggagactcacccGaacaccgtccgggcaggcct	12	14	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38287028	C	C	38287028	1	2	206	0	1	0	0	0	0	0	0	0	18132	1073	37	4		4	ZNF573	19	38287028	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1964505	38287028	20841955	823	162006											
CYP2A7	1549	broad.mit.edu	37	chr19	41533565	41533565	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctgctgccagactgaCatcaagaccatcacagtcag	7	14	4	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41533565	A	A	41533565	3	1	206	1	0	0	0	0	1	0	0	0	4196	493	17	3		3	CYP2A7	19	41533565	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	3246537	41533565	17595418	824	162007											
PSG3	5671	broad.mit.edu	37	chr19	43228455	43228455	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctgattgctattttctaTgtcattagaacttgccacct	7	9	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43228455	C	C	43228455	1	2	206	0	1	0	0	0	0	0	0	0	12762	1479	51	5		5	PSG3	19	43228455	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	1694890	43228455	15900528	825	162008											
MYH14	79784	broad.mit.edu	37	chr19	50796467	50796467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttctcctcacacccacCggccacccctccatcatcac	3	22	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50796467	T	T	50796467	1	4	206	0	1	0	0	0	0	0	0	0	10127	667	23	4		4	MYH14	19	50796467	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	7568012	50796467	8332516	826	162009											
KLK2	3817	broad.mit.edu	37	chr19	51379851	51379851	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttctgaagcatcaaagCcttagaccagatgaagactc	8	11	2	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51379851	A	A	51379851	3	1	206	1	0	0	0	0	1	0	0	0	8475	738	26	3	340	3	KLK2	19	51379851	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	583384	51379851	7749132	827	162010											
ZNF808	388558	broad.mit.edu	37	chr19	53057530	53057530	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcatactggagagaaacCatacaaatgtaaggtttgtg	9	5	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53057530	T	T	53057530	3	4	206	1	0	0	0	0	1	0	0	0	18302	594	21	4	1371	4	ZNF808	19	53057530	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1677679	53057530	6071453	828	162011											
ZNF677	342926	broad.mit.edu	37	chr19	53746912	53746912	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtttcaatctccccttttaGaacagggatcggattcagac	8	10	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53746912	C	C	53746912	1	2	206	0	1	0	0	0	0	0	0	0	18211	957	33	4		4	ZNF677	19	53746912	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	689382	53746912	5382071	829	162012											
ZNF761	388561	broad.mit.edu	37	chr19	53957975	53957975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagaagtgttccatgcaGggacattgcaaatacatgaa	10	7	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53957975	T	T	53957975	3	4	206	1	0	0	0	0	1	0	0	0	18265	1000	35	2	225	2	ZNF761	19	53957975	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	211063	53957975	5171008	830	162013											
CACNG8	59283	broad.mit.edu	37	chr19	54466459	54466459	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgagaagggggtgcaggtGctgctgacgacggtgggcgc	21	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54466459	T	T	54466459	2	4	206	1	0	0	0	0	0	0	0	1	2589	1306	46	3		3	CACNG8	19	54466459	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	508484	54466459	4662524	831	162014											
CACNG6	59285	broad.mit.edu	37	chr19	54501667	54501667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctctgctttaccccaGggcaggtctcgtgtctataa	8	15	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54501667	A	A	54501667	1	1	206	0	1	0	0	0	0	0	0	0	2587	1015	35	4		4	CACNG6	19	54501667	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	35208	54501667	4627316	832	162015											
LAIR1	3903	broad.mit.edu	37	chr19	54868320	54868320	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtgcgtttcatagacttaCtaatatataaaatatcttag	5	6	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54868320	T	T	54868320	1	4	206	0	1	0	0	0	0	0	0	0	8674	580	20	4		4	LAIR1	19	54868320	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	366653	54868320	4260663	833	162016											
LILRB1	10859	broad.mit.edu	37	chr19	55143080	55143080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatagagaaaagaaaacagCactctggattacacggatcc	8	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55143080	A	A	55143080	3	1	206	1	0	0	0	0	1	0	0	0	8862	710	25	3	210	3	LILRB1	19	55143080	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	274760	55143080	3985903	834	162017											
KIR2DS4	3809	broad.mit.edu	37	chr19	55349047	55349047	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggagtccacagaaaaccTtccttcctggccctcccagg	8	16	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55349047	G	G	55349047	2	3	206	1	0	0	0	0	0	0	0	1	8390	1596	56	5		5	KIR2DS4	19	55349047	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	205967	55349047	3779936	835	162018											
KIR2DS4	3809	broad.mit.edu	37	chr19	55351062	55351062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcctctgggccctgccaCccacggagggacctacagat	10	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55351062	A	A	55351062	3	1	206	1	0	0	0	0	1	0	0	0	8390	507	18	3	564	3	KIR2DS4	19	55351062	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	2015	55351062	3777921	836	162019											
NLRP2	55655	broad.mit.edu	37	chr19	55493644	55493644	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagagatacaagatgctgaTcccattcagcaaccccaggg	10	11	1	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55493644	C	C	55493644	3	2	206	1	0	0	0	0	1	0	0	0	10572	1435	50	5	596	5	NLRP2	19	55493644	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	142582	55493644	3635339	837	162020											
ZNF524	147807	broad.mit.edu	37	chr19	56114114	56114114	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctttacagaggccaacacGctccggcgccatgcgaagcg	12	15	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56114114	T	T	56114114	2	4	206	1	0	0	0	0	0	0	0	1	18093	1074	38	3		3	ZNF524	19	56114114	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	620470	56114114	3014869	838	162021											
NLRP4	147945	broad.mit.edu	37	chr19	56373482	56373482	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgacatcaggtccctcTgtgatgccttgaactaccca	9	12	2	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56373482	A	A	56373482	3	1	206	1	0	0	0	0	1	0	0	0	10574	1580	55	5	2157	5	NLRP4	19	56373482	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	259368	56373482	2755501	839	162022											
ZSCAN5A	79149	broad.mit.edu	37	chr19	56854607	56854607	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caacttctttctggtgatgtCcttggcaacccccttcagta	7	13	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56854607	G	G	56854607	1	3	206	0	1	0	0	0	0	0	0	0	18367	870	30	4		4	ZSCAN5A	19	56854607	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	481125	56854607	2274376	840	162023											
USP29	57663	broad.mit.edu	37	chr19	57640890	57640890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgactctcattcacagcaaCtgcagcaggggttccccaat	8	13	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57640890	A	A	57640890	3	1	206	1	0	0	0	0	1	0	0	0	17186	564	20	3	849	3	USP29	19	57640890	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	786283	57640890	1488093	841	162024											
DUXA	503835	broad.mit.edu	37	chr19	57672011	57672011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatattgaactttaacttacCtggattctggactcttctgt	7	8	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57672011	A	A	57672011	3	1	206	1	0	0	0	0	1	0	0	0	4874	695	24	2	454	2	DUXA	19	57672011	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	31121	57672011	1456972	842	162025											
ZNF460	10794	broad.mit.edu	37	chr19	57803657	57803657	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atccaagaattcctattagcGaaatagttttttaatataac	4	6	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57803657	T	T	57803657	1	4	206	0	1	0	0	0	0	0	0	0	18051	1073	37	3		3	ZNF460	19	57803657	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	131646	57803657	1325326	843	162026											
ZNF17	7565	broad.mit.edu	37	chr19	57931868	57931868	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatggatgcaatgaatgtggGaaatactttatgtacagttc	10	4	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57931868	A	A	57931868	2	1	206	1	0	0	0	0	0	0	0	1	17869	1161	41	4		4	ZNF17	19	57931868	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	128211	57931868	1197115	844	162027											
ZNF256	10172	broad.mit.edu	37	chr19	58455524	58455524	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accccatgctcatcctctttCcaagctctccaagctcccca	3	20	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58455524	A	A	58455524	1	1	206	0	1	0	0	0	0	0	0	0	17925	870	30	3		3	ZNF256	19	58455524	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	523656	58455524	673459	845	162028											
ZSCAN1	284312	broad.mit.edu	37	chr19	58549360	58549360	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacgtggcgagcgggccGcacctcgcgctgggccagct	15	16	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58549360	T	T	58549360	2	4	206	1	0	0	0	0	0	0	0	1	18355	1074	38	3		3	ZSCAN1	19	58549360	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	93836	58549360	579623	846	162029											
ZNF274	10782	broad.mit.edu	37	chr19	58721323	58721323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctggctggtgtctcctcCcagtacttcctgcaggacaa	9	15	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58721323	T	T	58721323	1	4	206	0	1	0	0	0	0	0	0	0	17935	638	22	4		4	ZNF274	19	58721323	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	171963	58721323	407660	847	162030											
CPXM1	56265	broad.mit.edu	37	chr20	2775080	2775080	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataatccccgccccacgctGaggagagtgaagggcacgat	12	12	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2775080	C	C	2775080	1	2	206	0	1	0	0	0	0	0	0	0	3869	1305	45	4		4	CPXM1	20	2775080	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08		2775080	60250440	848	162031											
CPXM1	56265	broad.mit.edu	37	chr20	2776118	2776118	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggatgcggtcccatcctccCgctaccctcccttctctgag	9	18	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2776118	T	T	2776118	1	4	206	0	1	0	0	0	0	0	0	0	3869	667	23	4		4	CPXM1	20	2776118	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1038	2776118	60249402	849	162032											
C20orf194	25943	broad.mit.edu	37	chr20	3296562	3296562	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatgtccatgtccagtgCtctcaggccctgacacacct	7	17	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3296562	A	A	3296562	1	1	206	0	1	0	0	0	0	0	0	0	2121	812	28	3		3	C20orf194	20	3296562	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	520444	3296562	59728958	850	162033											
TASP1	55617	broad.mit.edu	37	chr20	13415674	13415674	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagaaagacacacacaatGtatatgtctcacttacctag	5	9	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13415674	T	T	13415674	1	4	206	0	1	0	0	0	0	0	0	0	15708	1392	48	3		3	TASP1	20	13415674	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	10119112	13415674	49609846	851	162034											
C20orf112	140688	broad.mit.edu	37	chr20	31062425	31062425	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcttgactgtggaggtTctgcgggctccgcatcctct	12	13	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31062425	A	A	31062425	3	1	206	1	0	0	0	0	1	0	0	0	2103	1783	62	5	1250	5	C20orf112	20	31062425	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	17646751	31062425	31963095	852	162035											
C20orf185	359710	broad.mit.edu	37	chr20	31661283	31661283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgcctgctgtgttccaGgtacagggccaatcccaggg	14	11	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31661283	T	T	31661283	1	4	206	0	1	0	0	0	0	0	0	0	2119	1015	35	2		2	C20orf185	20	31661283	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	598858	31661283	31364237	853	162036											
NCOA6	23054	broad.mit.edu	37	chr20	33328755	33328755	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacctgagggctagcctcatCtggattcaattctttcactt	7	12	5	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33328755	A	A	33328755	3	1	206	1	0	0	0	0	1	0	0	0	10328	913	32	3	906	3	NCOA6	20	33328755	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1667472	33328755	29696765	854	162037											
TRPC4AP	26133	broad.mit.edu	37	chr20	33591144	33591144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaggtcaagcccagcacCgggacacccctctgagaggc	11	17	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33591144	A	A	33591144	1	1	206	0	1	0	0	0	0	0	0	0	16706	667	23	1		1	TRPC4AP	20	33591144	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	262389	33591144	29434376	855	162038											
FAM83C	128876	broad.mit.edu	37	chr20	33875579	33875579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgacgtggggcttgggaCatcaggcctgaaggctaggg	19	8	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33875579	A	A	33875579	3	1	206	1	0	0	0	0	1	0	0	0	5688	478	17	3	1244	3	FAM83C	20	33875579	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	284435	33875579	29149941	856	162039											
RBM12	10137	broad.mit.edu	37	chr20	34240590	34240590	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattgtattttaaacacacTgagcctgggattacttgata	7	7	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34240590	A	A	34240590	2	1	206	1	0	0	0	0	0	0	0	1	13221	1567	55	5		5	RBM12	20	34240590	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	365011	34240590	28784930	857	162040											
C20orf132	140699	broad.mit.edu	37	chr20	35749391	35749391	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatgatgttgaattcctgCaagcagcatgttctgaggag	11	8	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35749391	T	T	35749391	2	4	206	1	0	0	0	0	0	0	0	1	2108	709	25	4		4	C20orf132	20	35749391	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1508801	35749391	27276129	858	162041											
DHX35	60625	broad.mit.edu	37	chr20	37656980	37656980	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagcctggggtggtgctggGagtggatcctgtgcattaga	18	7	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37656980	T	T	37656980	1	4	206	0	1	0	0	0	0	0	0	0	4548	1189	41	3		3	DHX35	20	37656980	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1907589	37656980	25368540	859	162042											
PTPRT	11122	broad.mit.edu	37	chr20	40743997	40743997	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagagacagaacagagaCaaggatgcataagcacatgg	12	7	0	4			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40743997	A	A	40743997	1	1	206	0	1	0	0	0	0	0	0	0	12920	493	17	3		3	PTPRT	20	40743997	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3087017	40743997	22281523	860	162043											
IFT52	51098	broad.mit.edu	37	chr20	42249584	42249584	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtagacaccgaattattaGaaacttttaaatgaaaaatg	7	4	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42249584	C	C	42249584	1	2	206	0	1	0	0	0	0	0	0	0	7631	957	33	4		4	IFT52	20	42249584	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1505587	42249584	20775936	861	162044											
RIMS4	140730	broad.mit.edu	37	chr20	43384969	43384969	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactgcttccgctccatccGcccgtagttcccccacacga	7	19	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43384969	A	A	43384969	3	1	206	1	0	0	0	0	1	0	0	0	13481	1086	38	4	197	4	RIMS4	20	43384969	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1135385	43384969	19640551	862	162045											
SLC12A5	57468	broad.mit.edu	37	chr20	44683562	44683562	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgcccacagcatgagaGcgacatctcagcttacacct	8	14	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44683562	A	A	44683562	3	1	206	1	0	0	0	0	1	0	0	0	14499	971	34	4	2894	4	SLC12A5	20	44683562	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	1298593	44683562	18341958	863	162046											
PREX1	57580	broad.mit.edu	37	chr20	47305050	47305050	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttgatctctgagggcTgctccataaggattcaggtc	10	11	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47305050	A	A	47305050	1	1	206	0	1	0	0	0	0	0	0	0	12582	1595	55	5		5	PREX1	20	47305050	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2621488	47305050	15720470	864	162047											
KCNB1	3745	broad.mit.edu	37	chr20	47991437	47991437	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggttgtctgtggactggccGaactcatcgaggctctgtag	15	9	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47991437	T	T	47991437	3	4	206	1	0	0	0	0	1	0	0	0	8082	1049	37	3	1920	3	KCNB1	20	47991437	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	686387	47991437	15034083	865	162048											
CASS4	57091	broad.mit.edu	37	chr20	55033349	55033349	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagggcagacagccacaGcccattgattgaatctccta	10	11	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55033349	A	A	55033349	1	1	206	0	1	0	0	0	0	0	0	0	2709	986	34	4		4	CASS4	20	55033349	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	7041912	55033349	7992171	866	162049											
PHACTR3	116154	broad.mit.edu	37	chr20	58348440	58348440	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctcaccacggtccaccgGcctcttcccccaagccgcgt	7	21	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58348440	T	T	58348440	2	4	206	1	0	0	0	0	0	0	0	1	11906	1190	42	3		3	PHACTR3	20	58348440	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	3315091	58348440	4677080	867	162050											
C20orf197	284756	broad.mit.edu	37	chr20	58644975	58644975	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agaactggcttctcagcattCgtcccagcagaggctcttct	9	13	3	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58644975	G	G	58644975	1	3	206	0	1	0	0	0	0	0	0	0	2124	899	31	4		4	C20orf197	20	58644975	5'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	296535	58644975	4380545	868	162051											
TPTE	7179	broad.mit.edu	37	chr21	10996050	10996050	+	RNA	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggtaactgctcagaaaCagagcctgaggaatcttttc	10	9	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10996050	G	G	10996050	1	3	206	0	1	0	0	0	0	0	0	0	16554	493	17	4		4	TPTE	21	10996050	RNA	SNP	C	TCGA-73-4666-01A-01D-1265-08		10996050	37133845	869	162052											
CYYR1	116159	broad.mit.edu	37	chr21	27840859	27840859	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggataaggagggggtggagaAcgctgtgctggaccctgtgg	20	6	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27840859	G	G	27840859	2	3	206	1	0	0	0	0	0	0	0	1	4244	30	2	5		5	CYYR1	21	27840859	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08	16844809	27840859	20289036	870	162053											
ADAMTS5	11096	broad.mit.edu	37	chr21	28306899	28306899	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtcagacagaccatctgGccctggcgtaccacagcaca	10	14	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28306899	T	T	28306899	2	4	206	1	0	0	0	0	0	0	0	1	269	1190	42	3		3	ADAMTS5	21	28306899	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	466040	28306899	19822996	871	162054											
ADAMTS5	11096	broad.mit.edu	37	chr21	28307030	28307030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggagttcttcggggcCcaggatctgctttcgtggta	14	10	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28307030	A	A	28307030	3	1	206	1	0	0	0	0	1	0	0	0	269	623	22	2	1368	2	ADAMTS5	21	28307030	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	131	28307030	19822865	872	162055											
BACH1	571	broad.mit.edu	37	chr21	30714991	30714991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcagtgctgcctccctGtgccagaggaaacagtgagc	12	13	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30714991	T	T	30714991	3	4	206	1	0	0	0	0	1	0	0	0	1288	1377	48	3	2062	3	BACH1	21	30714991	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	2407961	30714991	17414904	873	162056											
KRTAP23-1	337963	broad.mit.edu	37	chr21	31720852	31720852	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacgaggagccaccacgggAgtagcctgagtagcacaggt	15	10	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31720852	T	T	31720852	3	4	206	1	0	0	0	0	1	0	0	0	8613	304	11	5	128	5	KRTAP23-1	21	31720852	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1005861	31720852	16409043	874	162057											
KRTAP19-3	337970	broad.mit.edu	37	chr21	31863900	31863900	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatacagagaaaaaaaattGcctgaaattctgagatgtta	8	4	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31863900	C	C	31863900	1	2	206	0	1	0	0	0	0	0	0	0	8601	1334	46	4		4	KRTAP19-3	21	31863900	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	143048	31863900	16265995	875	162058											
KRTAP6-1	337966	broad.mit.edu	37	chr21	31988757	31988757	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctcttctacacctgaacCatccatttctgacaccatga	3	15	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31988757	A	A	31988757	1	1	206	0	1	0	0	0	0	0	0	0	8641	609	21	2		2	KRTAP6-1	21	31988757	5'Flank	SNP	C	TCGA-73-4666-01A-01D-1265-08	124857	31988757	16141138	876	162059											
HUNK	30811	broad.mit.edu	37	chr21	33371024	33371024	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaccccctgatgctggacAtggtgcgctccttcgagtct	11	13	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33371024	G	G	33371024	3	3	206	1	0	0	0	0	1	0	0	0	7528	217	8	5	1714	5	HUNK	21	33371024	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	1382267	33371024	14758871	877	162060											
IGSF5	150084	broad.mit.edu	37	chr21	41143096	41143096	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggaagagcctgaaggcCcgcaagtctgcaactgtaaa	11	11	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41143096	A	A	41143096	2	1	206	1	0	0	0	0	0	0	0	1	7672	610	22	2		2	IGSF5	21	41143096	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	7772072	41143096	6986799	878	162061											
MX1	4599	broad.mit.edu	37	chr21	42807913	42807913	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagctcgggcaagagctcCgtgttggaggcactgtcagg	16	10	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42807913	A	A	42807913	2	1	206	1	0	0	0	0	0	0	0	1	10091	639	23	1		1	MX1	21	42807913	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	1664817	42807913	5321982	879	162062											
SIK1	150094	broad.mit.edu	37	chr21	44841777	44841777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcctgggatgtgtggcCcagacactggccgcgcaaat	16	11	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44841777	A	A	44841777	1	1	206	0	1	0	0	0	0	0	0	0	14430	638	22	2		2	SIK1	21	44841777	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2033864	44841777	3288118	880	162063											
COL6A1	1291	broad.mit.edu	37	chr21	47402746	47402746	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggaggggtgggggcccaGgggaacacgggtgcgacggc	24	8	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47402746	T	T	47402746	1	4	206	0	1	0	0	0	0	0	0	0	3731	1015	35	2		2	COL6A1	21	47402746	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	2560969	47402746	727149	881	162064											
COL6A2	1292	broad.mit.edu	37	chr21	47546265	47546265	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtgcagcccaggatctTgggctgtgggtgggaagggg	20	6	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47546265	A	A	47546265	1	1	206	0	1	0	0	0	0	0	0	0	3732	1827	63	5		5	COL6A2	21	47546265	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	143519	47546265	583630	882	162065											
SEC14L3	266629	broad.mit.edu	37	chr22	30866229	30866229	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcctccgacttctgcaaGtcaaaattccgagctgtggg	10	11	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30866229	T	T	30866229	3	4	206	1	0	0	0	0	1	0	0	0	14096	1020	36	3	1098	3	SEC14L3	22	30866229	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08		30866229	20438337	883	162066											
APOL6	80830	broad.mit.edu	37	chr22	36052348	36052348	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttattttgatagtacataatCcaaaatccctccacacctga	3	11	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36052348	A	A	36052348	1	1	206	0	1	0	0	0	0	0	0	0	812	870	30	3		3	APOL6	22	36052348	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	5186119	36052348	15252218	884	162067											
PICK1	9463	broad.mit.edu	37	chr22	38466962	38466962	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcatgctctcagcagagTggcaacaggggtgctggcac	16	10	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38466962	C	C	38466962	1	2	206	0	1	0	0	0	0	0	0	0	11976	1711	59	5		5	PICK1	22	38466962	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	2414614	38466962	12837604	885	162068											
APOBEC3H	164668	broad.mit.edu	37	chr22	39496197	39496197	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaaaacaaaaaagagttgGgtttgaaaagtggcttgagc	11	4	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39496197	A	A	39496197	1	1	206	0	1	0	0	0	0	0	0	0	797	1247	43	4		4	APOBEC3H	22	39496197	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1029235	39496197	11808369	886	162069											
XRCC6	2547	broad.mit.edu	37	chr22	42032775	42032775	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtgatctccgagatacagGtgggcatatttccccgttct	11	11	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42032775	T	T	42032775	5	4	206	1	0	0	0	0	0	0	1	0	17584	1275	44	3	604	3	XRCC6	22	42032775	Splice_Site	SNP	G	TCGA-73-4666-01A-01D-1265-08	2536578	42032775	9271791	887	162070											
NHP2L1	4809	broad.mit.edu	37	chr22	42072649	42072649	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttaaaataggaaaacaaaTggttttcatttggtggcagc	10	4	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42072649	C	C	42072649	1	2	206	0	1	0	0	0	0	0	0	0	10505	1479	51	5		5	NHP2L1	22	42072649	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	39874	42072649	9231917	888	162071											
CYP2D6	1565	broad.mit.edu	37	chr22	42523761	42523761	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagcctgtgcttggagcCccgggtgtcccagcaaagtt	13	12	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42523761	G	G	42523761	1	3	206	0	1	0	0	0	0	0	0	0	4202	638	22	4		4	CYP2D6	22	42523761	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	451112	42523761	8780805	889	162072											
SHANK3	85358	broad.mit.edu	37	chr22	51160429	51160429	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccttgagctcggagagcGgggaactcactgacacccac	11	15	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51160429	T	T	51160429	3	4	206	1	0	0	0	0	1	0	0	0	14379	1116	39	1	4302	1	SHANK3	22	51160429	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	8636668	51160429	144137	890	162073											
MXRA5	25878	broad.mit.edu	37	chrX	3241311	3241311	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggaggacttgtggttttAatcaatgggggtacttctgt	14	4	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3241311	T	T	3241311	2	4	206	1	0	0	0	0	0	0	0	1	10097	358	13	5		5	MXRA5	23	3241311	Silent	SNP	A	TCGA-73-4666-01A-01D-1265-08		3241311	152029249	891	162074											
FRMPD4	9758	broad.mit.edu	37	chrX	12735849	12735849	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgcctccaaagtcctcGcacgccctggctgctaggcc	11	17	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12735849	T	T	12735849	2	4	206	1	0	0	0	0	0	0	0	1	6119	1074	38	3		3	FRMPD4	23	12735849	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	9494538	12735849	142534711	892	162075											
TXLNG	55787	broad.mit.edu	37	chrX	16859727	16859727	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagggatttagcaacaccTgtgatgcagccctgtactgc	10	11	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16859727	A	A	16859727	2	1	206	1	0	0	0	0	0	0	0	1	16915	1567	55	5		5	TXLNG	23	16859727	Silent	SNP	T	TCGA-73-4666-01A-01D-1265-08	4123878	16859727	138410833	893	162076											
FAM48B1	100130302	broad.mit.edu	37	chrX	24381854	24381854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctgacccacagctccCagtctggccagcccaggagg	12	16	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24381854	A	A	24381854	3	1	206	1	0	0	0	0	1	0	0	0	5624	594	21	2	979	2	FAM48B1	23	24381854	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	7522127	24381854	130888706	894	162077											
MAOA	4128	broad.mit.edu	37	chrX	43571250	43571250	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgtgttcagtttgcacatGacccattactgaaataacaa	7	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43571250	T	T	43571250	1	4	206	0	1	0	0	0	0	0	0	0	9317	1305	45	3		3	MAOA	23	43571250	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	19189396	43571250	111699310	895	162078											
MAOA	4128	broad.mit.edu	37	chrX	43603416	43603416	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtacaagaacctgaatcaAaggtaagtttggtgactctg	12	6	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43603416	T	T	43603416	4	4	206	1	0	0	0	0	0	1	0	0	9317	15	1	5	1489	5	MAOA	23	43603416	Nonsense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	32166	43603416	111667144	896	162079											
ARAF	369	broad.mit.edu	37	chrX	47426324	47426324	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgatggtgagtcccctgtGcctgcaccctgacccccgct	10	17	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47426324	A	A	47426324	1	1	206	0	1	0	0	0	0	0	0	0	839	1334	46	4		4	ARAF	23	47426324	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	3822908	47426324	107844236	897	162080											
SSX1	6756	broad.mit.edu	37	chrX	48117896	48117896	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagcctcccaaagtgcCggtactacagacatgagcca	9	15	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48117896	G	G	48117896	1	3	206	0	1	0	0	0	0	0	0	0	15321	667	23	4		4	SSX1	23	48117896	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	691572	48117896	107152664	898	162081											
CACNA1F	778	broad.mit.edu	37	chrX	49074373	49074373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccttgaagagctgcaccCcgatgcaggcgaacataaat	9	13	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49074373	A	A	49074373	3	1	206	1	0	0	0	0	1	0	0	0	2569	623	22	2	2976	2	CACNA1F	23	49074373	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	956477	49074373	106196187	899	162082											
CCNB3	85417	broad.mit.edu	37	chrX	50094666	50094666	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaagctggaggagattttGaactgtgattgtgaggctca	14	4	1	5			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50094666	A	A	50094666	2	1	206	1	0	0	0	0	0	0	0	1	2944	1281	45	4		4	CCNB3	23	50094666	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	1020293	50094666	105175894	900	162083											
HUWE1	10075	broad.mit.edu	37	chrX	53674396	53674396	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccaagagaagcattttcAgttgctctctttctggccta	8	11	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53674396	T	T	53674396	3	4	206	1	0	0	0	0	1	0	0	0	7531	188	7	5	13174	5	HUWE1	23	53674396	Missense_Mutation	SNP	A	TCGA-73-4666-01A-01D-1265-08	3579730	53674396	101596164	901	162084											
OPHN1	4983	broad.mit.edu	37	chrX	67431944	67431944	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaaaatccacatgcaaActcacattctgtaaactgag	6	9	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67431944	T	T	67431944	1	4	206	0	1	0	0	0	0	0	0	0	10969	58	2	5		5	OPHN1	23	67431944	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	13757548	67431944	87838616	902	162085											
SLC7A3	84889	broad.mit.edu	37	chrX	70147910	70147910	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaaattagggaagcaggCccactcctctaccaccccca	6	16	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70147910	A	A	70147910	1	1	206	0	1	0	0	0	0	0	0	0	14812	754	26	3		3	SLC7A3	23	70147910	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2715966	70147910	85122650	903	162086											
IL2RG	3561	broad.mit.edu	37	chrX	70331295	70331295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgtggtgtcttcattcCcattgggcgtcagaattgtc	11	10	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70331295	A	A	70331295	3	1	206	1	0	0	0	0	1	0	0	0	7758	623	22	2	1046	2	IL2RG	23	70331295	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	183385	70331295	84939265	904	162087											
ZMYM3	9203	broad.mit.edu	37	chrX	70470204	70470204	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctccatcctgctaggttCttaccaacagtctctgtctt	6	14	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70470204	G	G	70470204	1	3	206	0	1	0	0	0	0	0	0	0	17827	928	32	4		4	ZMYM3	23	70470204	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	138909	70470204	84800356	905	162088											
OGT	8473	broad.mit.edu	37	chrX	70775975	70775975	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgtagctgggcatttaGcatgatagtagagggaaagc	16	4	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70775975	C	C	70775975	1	2	206	0	1	0	0	0	0	0	0	0	10942	986	34	4		4	OGT	23	70775975	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	305771	70775975	84494585	906	162089											
OGT	8473	broad.mit.edu	37	chrX	70784726	70784726	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttaaaatttttttttgGctgggtgcagtggctcacgc	10	7	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70784726	T	T	70784726	1	4	206	0	1	0	0	0	0	0	0	0	10942	1218	42	3		3	OGT	23	70784726	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	8751	70784726	84485834	907	162090											
CHIC1	53344	broad.mit.edu	37	chrX	72899193	72899193	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcagaagttaatagaatgGgaaaataacagattatatca	7	3	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72899193	T	T	72899193	3	4	206	1	0	0	0	0	1	0	0	0	3374	1241	43	2	554	2	CHIC1	23	72899193	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	2114467	72899193	82371367	908	162091											
CXorf26	51260	broad.mit.edu	37	chrX	75394862	75394862	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctctgcttatcactattctCagcaagttaaacagttgtgt	7	9	3	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75394862	T	T	75394862	1	4	206	0	1	0	0	0	0	0	0	0	4137	841	29	4		4	CXorf26	23	75394862	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	2495669	75394862	79875698	909	162092											
ATRX	546	broad.mit.edu	37	chrX	76920178	76920178	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttccagttctttttTtcccttcttctggctcatca	4	11	5	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76920178	C	C	76920178	3	2	206	1	0	0	0	0	1	0	0	0	1212	1841	64	5	3679	5	ATRX	23	76920178	Missense_Mutation	SNP	T	TCGA-73-4666-01A-01D-1265-08	1525316	76920178	78350382	910	162093											
P2RY10	27334	broad.mit.edu	37	chrX	78216121	78216121	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taatgtgaaatttcaatactCcctctatgcaaccacctata	3	11	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78216121	A	A	78216121	3	1	206	1	0	0	0	0	1	0	0	0	11441	855	30	3	106	3	P2RY10	23	78216121	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1295943	78216121	77054439	911	162094											
BRWD3	254065	broad.mit.edu	37	chrX	79945592	79945592	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattaatgctgatattctcCtgtgaaagaaaaaatactct	5	7	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79945592	A	A	79945592	5	1	206	1	0	0	0	0	0	0	1	0	1535	695	24	2	1846	2	BRWD3	23	79945592	Splice_Site	SNP	C	TCGA-73-4666-01A-01D-1265-08	1729471	79945592	75324968	912	162095											
CHM	1121	broad.mit.edu	37	chrX	85213885	85213885	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgttccactcgtccttctCgaaatgcaagaatcctggta	7	13	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85213885	A	A	85213885	3	1	206	1	0	0	0	0	1	0	0	0	3381	884	31	3	1201	3	CHM	23	85213885	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	5268293	85213885	70056675	913	162096											
PCDH11X	27328	broad.mit.edu	37	chrX	91137922	91137922	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctagactgattccaggacatCaactattgaaatctgcagtg	8	9	2	3	rs2525214		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91137922	A	A	91137922	1	1	206	0	1	0	0	0	0	0	0	0	11602	838	29	3		3	PCDH11X	23	91137922	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	5924037	91137922	64132638	914	162097											
ARMCX5	64860	broad.mit.edu	37	chrX	101858906	101858906	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagatcctgaacatgtgctGatttttattgtgctatatag	9	5	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101858906	T	T	101858906	1	4	206	0	1	0	0	0	0	0	0	0	966	1305	45	3		3	ARMCX5	23	101858906	3'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	10720984	101858906	53411654	915	162098											
COL4A6	1288	broad.mit.edu	37	chrX	107438410	107438410	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataggctacctagaaaaagCcactagacttatataacaaa	5	8	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107438410	A	A	107438410	1	1	206	0	1	0	0	0	0	0	0	0	3727	754	26	3		3	COL4A6	23	107438410	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	5579504	107438410	47832150	916	162099											
CAPN6	827	broad.mit.edu	37	chrX	110490843	110490843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcagcatagcactcgagCaccagaatgactgagattca	8	11	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110490843	A	A	110490843	1	1	206	0	1	0	0	0	0	0	0	0	2656	725	25	3		3	CAPN6	23	110490843	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	3052433	110490843	44779717	917	162100											
ATP1B4	23439	broad.mit.edu	37	chrX	119504879	119504879	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcattttgattgcctgggGggaaatggtttcatgggaat	13	4	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119504879	T	T	119504879	1	4	206	0	1	0	0	0	0	0	0	0	1139	1247	43	2		2	ATP1B4	23	119504879	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	9014036	119504879	35765681	918	162101											
CT47B1	643311	broad.mit.edu	37	chrX	120008640	120008640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcaccacccgaggcccCgaccccccttcaccacccgc	6	24	2	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120008640	A	A	120008640	1	1	206	0	1	0	0	0	0	0	0	0	4023	667	23	1		1	CT47B1	23	120008640	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	503761	120008640	35261920	919	162102											
DCAF12L2	340578	broad.mit.edu	37	chrX	125299020	125299020	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgatggacaggagcctGgatagtgtgctccgggcttt	15	9	0	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125299020	T	T	125299020	2	4	206	1	0	0	0	0	0	0	0	1	4298	1335	47	2		2	DCAF12L2	23	125299020	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	5290380	125299020	29971540	920	162103											
SMARCA1	6594	broad.mit.edu	37	chrX	128633819	128633819	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaaatggttttaaaacCtaaaaggtgatcatttttat	5	4	1	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128633819	G	G	128633819	5	3	206	1	0	0	0	0	0	0	1	0	14882	695	24	4	2057	4	SMARCA1	23	128633819	Splice_Site	SNP	C	TCGA-73-4666-01A-01D-1265-08	3334799	128633819	26636741	921	162104											
SASH3	54440	broad.mit.edu	37	chrX	128925116	128925116	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaggactgggttacagcCgtgctggtggcacactgtct	15	9	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128925116	A	A	128925116	1	1	206	0	1	0	0	0	0	0	0	0	13961	667	23	1		1	SASH3	23	128925116	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	291297	128925116	26345444	922	162105											
SASH3	54440	broad.mit.edu	37	chrX	128926692	128926692	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgggctctttcaaattcatCtatgtggatgtgctgcccga	11	9	4	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128926692	G	G	128926692	3	3	206	1	0	0	0	0	1	0	0	0	13961	903	32	4	703	4	SASH3	23	128926692	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	1576	128926692	26343868	923	162106											
ZDHHC9	51114	broad.mit.edu	37	chrX	128940160	128940160	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacatcttctgccactgCcttgagttcagaaatttaaa	6	10	3	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128940160	A	A	128940160	1	1	206	0	1	0	0	0	0	0	0	0	17748	754	26	3		3	ZDHHC9	23	128940160	3'UTR	SNP	C	TCGA-73-4666-01A-01D-1265-08	13468	128940160	26330400	924	162107											
ZNF280C	55609	broad.mit.edu	37	chrX	129339490	129339490	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactaacttgatttgcatttTagtctccacaaccgtcattt	4	10	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129339490	C	C	129339490	1	2	206	0	1	0	0	0	0	0	0	0	17942	1769	61	5		5	ZNF280C	23	129339490	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	399330	129339490	25931070	925	162108											
FRMD7	90167	broad.mit.edu	37	chrX	131219567	131219567	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgagccaagataaccacCcctcactaaagctgaagggc	9	12	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131219567	A	A	131219567	1	1	206	0	1	0	0	0	0	0	0	0	6115	638	22	2		2	FRMD7	23	131219567	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1880077	131219567	24050993	926	162109											
ZNF75D	7626	broad.mit.edu	37	chrX	134421782	134421782	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttttagctttaaccctgTtagaataaacagaataatca	4	6	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134421782	A	A	134421782	1	1	206	0	1	0	0	0	0	0	0	0	18263	1740	60	5		5	ZNF75D	23	134421782	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	3202215	134421782	20848778	927	162110											
SAGE1	55511	broad.mit.edu	37	chrX	134988743	134988743	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgtattactgtcctactTggtttccatatgcatgcata	6	8	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134988743	A	A	134988743	1	1	206	0	1	0	0	0	0	0	0	0	13920	1827	63	5		5	SAGE1	23	134988743	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	566961	134988743	20281817	928	162111											
SLC9A6	10479	broad.mit.edu	37	chrX	135115741	135115741	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttttgactattctcttcCtggagcagaatataaaacct	7	8	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135115741	T	T	135115741	1	4	206	0	1	0	0	0	0	0	0	0	14832	696	24	4		4	SLC9A6	23	135115741	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	126998	135115741	20154819	929	162112											
RBMX	27316	broad.mit.edu	37	chrX	135960062	135960062	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccaaacccgaggtccacGcaagttattacccatgtgtc	7	14	0	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135960062	T	T	135960062	1	4	206	0	1	0	0	0	0	0	0	0	13259	1102	38	3		3	RBMX	23	135960062	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	844321	135960062	19310498	930	162113											
FGF13	2258	broad.mit.edu	37	chrX	137793019	137793019	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttggagccgaagagtttGacccgggaaaagacatttaa	11	7	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137793019	T	T	137793019	2	4	206	1	0	0	0	0	0	0	0	1	5899	1277	45	3		3	FGF13	23	137793019	Silent	SNP	G	TCGA-73-4666-01A-01D-1265-08	1832957	137793019	17477541	931	162114											
MCF2	4168	broad.mit.edu	37	chrX	138678978	138678978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagcaaagctacattcaGctctctgacaccaacatgtt	6	11	2	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138678978	T	T	138678978	1	4	206	0	1	0	0	0	0	0	0	0	9471	986	34	3		3	MCF2	23	138678978	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	885959	138678978	16591582	932	162115											
MTM1	4534	broad.mit.edu	37	chrX	149783175	149783175	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagatattacttgtaaagtAagagattcgatactttctta	6	5	1	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149783175	T	T	149783175	1	4	206	0	1	0	0	0	0	0	0	0	10031	377	13	5		5	MTM1	23	149783175	Intron	SNP	A	TCGA-73-4666-01A-01D-1265-08	11104197	149783175	5487385	933	162116											
MTM1	4534	broad.mit.edu	37	chrX	149787523	149787523	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccccaggacatgagaaacCtgaggttcgctttgaaacag	11	11	0	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149787523	A	A	149787523	3	1	206	1	0	0	0	0	1	0	0	0	10031	680	24	2	373	2	MTM1	23	149787523	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	4348	149787523	5483037	934	162117											
HMGB3	3149	broad.mit.edu	37	chrX	150154428	150154428	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctttacctaccccctttTgcaagtggttctagcaactg	8	13	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150154428	C	C	150154428	1	2	206	0	1	0	0	0	0	0	0	0	7294	1827	63	5		5	HMGB3	23	150154428	Intron	SNP	T	TCGA-73-4666-01A-01D-1265-08	366905	150154428	5116132	935	162118											
NSDHL	50814	broad.mit.edu	37	chrX	152018681	152018681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatataaagcttccaacttGgctcaagaagagttccaaac	7	9	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152018681	T	T	152018681	1	4	206	0	1	0	0	0	0	0	0	0	10765	1363	47	2		2	NSDHL	23	152018681	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	1864253	152018681	3251879	936	162119											
PNMA3	29944	broad.mit.edu	37	chrX	152226624	152226624	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagggctggctctcgaggCtcaagaaaacggaaacgcca	13	11	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152226624	A	A	152226624	2	1	206	1	0	0	0	0	0	0	0	1	12250	784	28	3		3	PNMA3	23	152226624	Silent	SNP	C	TCGA-73-4666-01A-01D-1265-08	207943	152226624	3043936	937	162120											
BGN	633	broad.mit.edu	37	chrX	152773575	152773575	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccatgccttggtttgctcctCccaacaacggggagcctctg	10	15	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152773575	G	G	152773575	1	3	206	0	1	0	0	0	0	0	0	0	1424	870	30	4		4	BGN	23	152773575	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	546951	152773575	2496985	938	162121											
BCAP31	10134	broad.mit.edu	37	chrX	152969270	152969270	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccccactgaggacttcCcctctgcgcctccacccaac	5	22	2	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152969270	A	A	152969270	1	1	206	0	1	0	0	0	0	0	0	0	1352	638	22	2		2	BCAP31	23	152969270	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	195695	152969270	2301290	939	162122											
ABCD1	215	broad.mit.edu	37	chrX	153001671	153001671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacctcctgacagcggctgCagatgccattgagcggatca	11	13	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153001671	A	A	153001671	3	1	206	1	0	0	0	0	1	0	0	0	60	710	25	3	1197	3	ABCD1	23	153001671	Missense_Mutation	SNP	C	TCGA-73-4666-01A-01D-1265-08	32401	153001671	2268889	940	162123											
PLXNB3	5365	broad.mit.edu	37	chrX	153036561	153036561	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggctgccttccaaaccctCttgcccccaagcttccgtag	8	17	1	0			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153036561	A	A	153036561	1	1	206	0	1	0	0	0	0	0	0	0	12220	928	32	3		3	PLXNB3	23	153036561	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	34890	153036561	2233999	941	162124											
PLXNB3	5365	broad.mit.edu	37	chrX	153040878	153040878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttggccttgacctggaccCggtggcgggggtgagggctt	20	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153040878	A	A	153040878	1	1	206	0	1	0	0	0	0	0	0	0	12220	667	23	1		1	PLXNB3	23	153040878	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	4317	153040878	2229682	942	162125											
PDZD4	57595	broad.mit.edu	37	chrX	153095780	153095780	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggcgagaggaggcggaGggcgggaacgggaagacgcc	23	9	0	2			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153095780	T	T	153095780	1	4	206	0	1	0	0	0	0	0	0	0	11797	1015	35	2		2	PDZD4	23	153095780	5'UTR	SNP	G	TCGA-73-4666-01A-01D-1265-08	54902	153095780	2174780	943	162126											
MECP2	4204	broad.mit.edu	37	chrX	153296370	153296370	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccgggtcttgcgcttcttGatggggagtacggtctcctg	14	11	3	1	rs61751439		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153296370	C	C	153296370	3	2	206	1	0	0	0	0	1	0	0	0	9516	1280	45	4	555	4	MECP2	23	153296370	Missense_Mutation	SNP	G	TCGA-73-4666-01A-01D-1265-08	200590	153296370	1974190	944	162127											
FLNA	2316	broad.mit.edu	37	chrX	153589621	153589621	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagatggggtacctttggGgccctcagagagcacagtgg	16	8	1	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153589621	C	C	153589621	1	2	206	0	1	0	0	0	0	0	0	0	5991	1247	43	4		4	FLNA	23	153589621	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	293251	153589621	1680939	945	162128											
TMLHE	55217	broad.mit.edu	37	chrX	154754316	154754316	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agggaaaagatcacatttatCagaactatttattgagataa	7	4	2	3			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154754316	G	G	154754316	1	3	206	0	1	0	0	0	0	0	0	0	16355	841	29	4		4	TMLHE	23	154754316	Intron	SNP	C	TCGA-73-4666-01A-01D-1265-08	1164695	154754316	516244	946	162129											
IL9R	3581	broad.mit.edu	37	chrX	155231204	155231204	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcatcagtcttaacagGggactgtcctatgggtacct	10	10	3	1			TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155231204	T	T	155231204	1	4	206	0	1	0	0	0	0	0	0	0	7778	1247	43	2		2	IL9R	23	155231204	Intron	SNP	G	TCGA-73-4666-01A-01D-1265-08	476888	155231204	39356	947	162130											
NOC2L	26155	broad.mit.edu	37	chr1	887454	887454	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcgctggggcccgcagtgctCaggacccggcaccacaggaa	14	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	887454	G	G	887454	2	3	207	1	0	0	0	0	0	0	0	1	10608	813	29	4		4	NOC2L	1	887454	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08		887454	248363167	1	162131											
CDK11B	984	broad.mit.edu	37	chr1	1647842	1647842	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgtctttcccattccCggcgagctttatcctgttct	6	14	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1647842	T	T	1647842	3	4	207	1	0	0	0	0	1	0	0	0	3157	652	23	4	2002	4	CDK11B	1	1647842	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	760388	1647842	247602779	2	162132											
DFFB	1677	broad.mit.edu	37	chr1	3774281	3774281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggctgtctccgcttccaGgtgcccgctgggctaggcgg	16	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3774281	T	T	3774281	3	4	207	1	0	0	0	0	1	0	0	0	4493	1014	35	2	116	2	DFFB	1	3774281	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2126439	3774281	245476340	3	162133											
CHD5	26038	broad.mit.edu	37	chr1	6191633	6191633	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctggctaagaaccaggcCtgggagaagaggccaaaaag	14	9	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6191633	T	T	6191633	1	4	207	0	1	0	0	0	0	0	0	0	3359	696	24	4		4	CHD5	1	6191633	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2417352	6191633	243058988	4	162134											
CHD5	26038	broad.mit.edu	37	chr1	6194573	6194573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccctaccacagcagcggGttccacggtaagttccccag	10	16	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6194573	T	T	6194573	1	4	207	0	1	0	0	0	0	0	0	0	3359	1276	44	3		3	CHD5	1	6194573	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2940	6194573	243056048	5	162135											
ACOT7	11332	broad.mit.edu	37	chr1	6393646	6393646	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccttaagagaagaaaatcAcattaagtgacgcccgggag	10	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6393646	C	C	6393646	1	2	207	0	1	0	0	0	0	0	0	0	155	174	6	5		5	ACOT7	1	6393646	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	199073	6393646	242856975	6	162136											
PLEKHG5	57449	broad.mit.edu	37	chr1	6527485	6527485	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaagcgcaaatcgggccCgggcgtaggcagggatcctg	17	11	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6527485	A	A	6527485	1	1	207	0	1	0	0	0	0	0	0	0	12168	667	23	1		1	PLEKHG5	1	6527485	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	133839	6527485	242723136	7	162137											
VAMP3	9341	broad.mit.edu	37	chr1	7838116	7838116	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagatgaatattatataataCtcttcaacaagcacattatg	4	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7838116	G	G	7838116	1	3	207	0	1	0	0	0	0	0	0	0	17241	580	20	4		4	VAMP3	1	7838116	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1310631	7838116	241412505	8	162138											
UBE4B	10277	broad.mit.edu	37	chr1	10166582	10166582	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagcacgggtccacccctAccacccgcctcacccagtgc	8	21	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10166582	G	G	10166582	2	3	207	1	0	0	0	0	0	0	0	1	17009	378	14	5		5	UBE4B	1	10166582	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	2328466	10166582	239084039	9	162139											
UBE4B	10277	broad.mit.edu	37	chr1	10206973	10206973	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccagtccccctgtagggActtagctactgactgatctt	9	13	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10206973	G	G	10206973	1	3	207	0	1	0	0	0	0	0	0	0	17009	290	10	5		5	UBE4B	1	10206973	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	40391	10206973	239043648	10	162140											
MTOR	2475	broad.mit.edu	37	chr1	11205170	11205170	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggttattttagggcacccCaactagctacagaagttatc	9	9	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11205170	G	G	11205170	1	3	207	0	1	0	0	0	0	0	0	0	10048	609	21	4		4	MTOR	1	11205170	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	998197	11205170	238045451	11	162141											
MTHFR	4524	broad.mit.edu	37	chr1	11851180	11851180	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctgggtccagtgtggccTtcagcacacgcttgggactt	14	11	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11851180	A	A	11851180	1	1	207	0	1	0	0	0	0	0	0	0	10025	1624	56	5		5	MTHFR	1	11851180	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	646010	11851180	237399441	12	162142											
CLCN6	1185	broad.mit.edu	37	chr1	11894513	11894513	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtccgccccacaggacctAtttttaggtctttgctttgt	8	12	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11894513	G	G	11894513	1	3	207	0	1	0	0	0	0	0	0	0	3498	464	16	5		5	CLCN6	1	11894513	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	43333	11894513	237356108	13	162143											
SPEN	23013	broad.mit.edu	37	chr1	16255835	16255835	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcattctgctgagggaaggaGaggctgaaagaaagcctgtg	15	6	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16255835	A	A	16255835	3	1	207	1	0	0	0	0	1	0	0	0	15156	943	33	4	3142	4	SPEN	1	16255835	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	4361322	16255835	232994786	14	162144											
SPEN	23013	broad.mit.edu	37	chr1	16259617	16259617	+	Frame_Shift_Del	DEL	C	-	-													gctcctgacccctcagccggCccaacagataccaaggaagc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16259617	-	-	16259617	7	5	207	1	0	1	0	1	0	0	0	0	15156	726	26	0	6924	0	SPEN	1	16259617	Frame_Shift_Del	DEL	C	TCGA-73-4668-01A-01D-1265-08	3782	16259617	232991004	15	162145											
NBPF1	55672	broad.mit.edu	37	chr1	16918197	16918197	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacctctgtcttccaacttTaacaaaatgttaaaataccc	3	11	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16918197	C	C	16918197	1	2	207	0	1	0	0	0	0	0	0	0	10286	1769	61	5		5	NBPF1	1	16918197	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	658580	16918197	232332424	16	162146											
CROCC	9696	broad.mit.edu	37	chr1	17266539	17266539	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcaggcccacgaggacGcccagcgcgaggtgcagcgg	16	15	0	0	rs138094629		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17266539	A	A	17266539	3	1	207	1	0	0	0	0	1	0	0	0	3925	1087	38	4	1809	4	CROCC	1	17266539	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	348342	17266539	231984082	17	162147											
SDHB	6390	broad.mit.edu	37	chr1	17371153	17371153	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgttttaaaaacagagccatCggatgatctcagatttttaa	7	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17371153	A	A	17371153	1	1	207	0	1	0	0	0	0	0	0	0	14078	899	31	3		3	SDHB	1	17371153	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	104614	17371153	231879468	18	162148											
PADI2	11240	broad.mit.edu	37	chr1	17419874	17419874	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaggattacaggtgtgagCcaccacgcccggcccttgtc	12	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17419874	A	A	17419874	1	1	207	0	1	0	0	0	0	0	0	0	11472	754	26	3		3	PADI2	1	17419874	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	48721	17419874	231830747	19	162149											
IGSF21	84966	broad.mit.edu	37	chr1	18702949	18702949	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtagaggcaccgacccagCaccagcattcctggcagtcc	11	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18702949	A	A	18702949	1	1	207	0	1	0	0	0	0	0	0	0	7669	725	25	3		3	IGSF21	1	18702949	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1283075	18702949	230547672	20	162150											
C1QA	712	broad.mit.edu	37	chr1	22964187	22964187	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgaccgaggacttgtgCcgagcaccagacgggaagaa	15	9	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22964187	A	A	22964187	4	1	207	1	0	0	0	0	0	1	0	0	1974	747	26	3	80	3	C1QA	1	22964187	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4261238	22964187	226286434	21	162151											
TMEM57	55219	broad.mit.edu	37	chr1	25775240	25775240	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatgtgtttaacaatgtgTggttgaaaataacaggttct	9	4	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25775240	A	A	25775240	1	1	207	0	1	0	0	0	0	0	0	0	16307	1711	59	5		5	TMEM57	1	25775240	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2811053	25775240	223475381	22	162152											
STX12	23673	broad.mit.edu	37	chr1	28138717	28138717	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagccaggaggatgaggtgGccatcactgagcaggatttg	16	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28138717	T	T	28138717	3	4	207	1	0	0	0	0	1	0	0	0	15456	1203	42	3	536	3	STX12	1	28138717	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2363477	28138717	221111904	23	162153											
PTPRU	10076	broad.mit.edu	37	chr1	29638171	29638171	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtgaaatgctcacggtActggccggaggactcagaca	13	10	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29638171	G	G	29638171	3	3	207	1	0	0	0	0	1	0	0	0	12921	391	14	5	3110	5	PTPRU	1	29638171	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	1499454	29638171	219612450	24	162154											
LAPTM5	7805	broad.mit.edu	37	chr1	31211925	31211925	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagctctggggaggacaaatAcaaggaggaggaatgaggag	18	4	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31211925	T	T	31211925	1	4	207	0	1	0	0	0	0	0	0	0	8698	406	14	5		5	LAPTM5	1	31211925	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1573754	31211925	218038696	25	162155											
CSMD2	114784	broad.mit.edu	37	chr1	34087803	34087803	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagccagctgcagatacgcTgatatctgagtagaaatgaa	11	7	1	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34087803	A	A	34087803	3	1	207	1	0	0	0	0	1	0	0	0	3979	1580	55	5	4924	5	CSMD2	1	34087803	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	2875878	34087803	215162818	26	162156											
EIF2C4	192670	broad.mit.edu	37	chr1	36297282	36297282	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgttaatttctaaaatatTtttggcagatgatttcacta	6	4	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36297282	G	G	36297282	1	3	207	0	1	0	0	0	0	0	0	0	5048	1856	64	5		5	EIF2C4	1	36297282	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2209479	36297282	212953339	27	162157											
EIF2C1	26523	broad.mit.edu	37	chr1	36358069	36358069	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttaggagtgagtataatagAtgggacattgcctggacttt	13	4	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36358069	T	T	36358069	1	4	207	0	1	0	0	0	0	0	0	0	5045	348	12	5		5	EIF2C1	1	36358069	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	60787	36358069	212892552	28	162158											
EIF2C1	26523	broad.mit.edu	37	chr1	36384872	36384873	+	Intron	DNP	GG	TT	TT													acaggtgaggcctgggatcaGgttggcctcctttttgcttc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36384873	TT	TT	36384872	1	4	207	0	1	0	0	0	0	0	0	0	5045	1015	35	2		2	EIF2C1	1	36384872	Intron	DNP	GG	TCGA-73-4668-01A-01D-1265-08	26803	36384872	212865749	29	162159											
GRIK3	2899	broad.mit.edu	37	chr1	37282790	37282790	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaggcagccaggttggcCgtgtaggaagagatgatgat	16	5	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37282790	A	A	37282790	2	1	207	1	0	0	0	0	0	0	0	1	6841	639	23	1		1	GRIK3	1	37282790	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	897918	37282790	211967831	30	162160											
GNL2	29889	broad.mit.edu	37	chr1	38032607	38032607	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcgtactgctcgcctcCgctgtaaaaaatggcaagaa	10	11	0	1	rs116251390	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38032607	A	A	38032607	3	1	207	1	0	0	0	0	1	0	0	0	6600	666	23	1	154	1	GNL2	1	38032607	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	749817	38032607	211218014	31	162161											
EPHA10	284656	broad.mit.edu	37	chr1	38183908	38183908	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcggggaagctgtggcCccaccagatctgggcccaag	15	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38183908	A	A	38183908	1	1	207	0	1	0	0	0	0	0	0	0	5208	638	22	2		2	EPHA10	1	38183908	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	151301	38183908	211066713	32	162162											
SCMH1	22955	broad.mit.edu	37	chr1	41494216	41494216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccaggtgaggctctcCacacaggttcctactgagag	10	15	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41494216	A	A	41494216	1	1	207	0	1	0	0	0	0	0	0	0	14021	609	21	2		2	SCMH1	1	41494216	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3310308	41494216	207756405	33	162163											
TIE1	7075	broad.mit.edu	37	chr1	43783064	43783064	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgaagatgaacgcagcCatcaaaatgctgaaaggtcc	12	9	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43783064	A	A	43783064	2	1	207	1	0	0	0	0	0	0	0	1	16016	581	21	2		2	TIE1	1	43783064	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2288848	43783064	205467557	34	162164											
SLC6A9	6536	broad.mit.edu	37	chr1	44477388	44477388	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatctctgaacagggagaaGcgtcacctgcaggggagggg	18	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44477388	T	T	44477388	3	4	207	1	0	0	0	0	1	0	0	0	14805	971	34	3	2078	3	SLC6A9	1	44477388	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	694324	44477388	204773233	35	162165											
RNF220	55182	broad.mit.edu	37	chr1	45088460	45088460	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctccaggcaccccaaagGtaggtggccaattacatgtt	11	11	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45088460	A	A	45088460	5	1	207	1	0	0	0	0	0	0	1	0	13594	1275	44	4	815	4	RNF220	1	45088460	Splice_Site	SNP	G	TCGA-73-4668-01A-01D-1265-08	611072	45088460	204162161	36	162166											
SPATA6	54558	broad.mit.edu	37	chr1	48764476	48764476	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctgttctcaaagatgggtCggtgggattttcccttataa	11	7	1	1	rs144278281		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48764476	A	A	48764476	3	1	207	1	0	0	0	0	1	0	0	0	15129	884	31	3	94	3	SPATA6	1	48764476	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3676016	48764476	200486145	37	162167											
NRD1	4898	broad.mit.edu	37	chr1	52257206	52257206	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgtagcccctactctccAtgtccataataggttacact	5	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52257206	G	G	52257206	1	3	207	0	1	0	0	0	0	0	0	0	10740	232	8	5		5	NRD1	1	52257206	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3492730	52257206	196993415	38	162168											
SSBP3	23648	broad.mit.edu	37	chr1	54870665	54870665	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcagatcccaccggcgctctCcaggaccttgccagcaggct	10	17	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54870665	A	A	54870665	1	1	207	0	1	0	0	0	0	0	0	0	15299	870	30	3		3	SSBP3	1	54870665	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2613459	54870665	194379956	39	162169											
TTC22	55001	broad.mit.edu	37	chr1	55253433	55253433	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgccggagtagggccagCgtgcggttgaaggcaggcag	18	9	0	1	rs146222875	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55253433	A	A	55253433	2	1	207	1	0	0	0	0	0	0	0	1	16815	755	27	3		3	TTC22	1	55253433	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	382768	55253433	193997188	40	162170											
C8B	732	broad.mit.edu	37	chr1	57431682	57431682	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccataacaagcctgtgctgtGagtgccactgtcagcttctg	10	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57431682	A	A	57431682	1	1	207	0	1	0	0	0	0	0	0	0	2442	1305	45	4		4	C8B	1	57431682	5'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	2178249	57431682	191818939	41	162171											
RPE65	6121	broad.mit.edu	37	chr1	68914233	68914233	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agggggagtctgcactgagaGacgccaaggaataggaagcc	16	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68914233	T	T	68914233	1	4	207	0	1	0	0	0	0	0	0	0	13656	957	33	3		3	RPE65	1	68914233	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	11482551	68914233	180336388	42	162172											
PTGER3	5733	broad.mit.edu	37	chr1	71327997	71327997	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatgacttacatctgctgtCaaaatagttcacagatactt	5	9	4	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71327997	A	A	71327997	1	1	207	0	1	0	0	0	0	0	0	0	12850	841	29	3		3	PTGER3	1	71327997	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2413764	71327997	177922624	43	162173											
PTGER3	5733	broad.mit.edu	37	chr1	71440156	71440156	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacctgcatatcaaagtcaCattggctatgatcaatatgg	7	8	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71440156	A	A	71440156	1	1	207	0	1	0	0	0	0	0	0	0	12850	493	17	3		3	PTGER3	1	71440156	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	112159	71440156	177810465	44	162174											
TNNI3K	51086	broad.mit.edu	37	chr1	74737436	74737436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaacaaaggttatttacCttttcggttgttgttcttaa	7	5	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74737436	A	A	74737436	1	1	207	0	1	0	0	0	0	0	0	0	16452	696	24	2		2	TNNI3K	1	74737436	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3297280	74737436	174513185	45	162175											
ELTD1	64123	broad.mit.edu	37	chr1	79403492	79403492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggacccttgtttcttacCtatatccgttgaatttgtat	6	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79403492	A	A	79403492	3	1	207	1	0	0	0	0	1	0	0	0	5126	695	24	2	1352	2	ELTD1	1	79403492	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4666056	79403492	169847129	46	162176											
LPHN2	23266	broad.mit.edu	37	chr1	82188470	82188470	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgagagagcccggagggagGaagaagccagaccacagtca	15	9	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82188470	A	A	82188470	1	1	207	0	1	0	0	0	0	0	0	0	9003	1189	41	4		4	LPHN2	1	82188470	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2784978	82188470	167062151	47	162177											
RPF1	80135	broad.mit.edu	37	chr1	84946553	84946553	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcccagttcgagtattcatAgcattagtaatttgtagttt	8	7	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84946553	G	G	84946553	1	3	207	0	1	0	0	0	0	0	0	0	13657	435	15	5		5	RPF1	1	84946553	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2758083	84946553	164304068	48	162178											
GNG5	2787	broad.mit.edu	37	chr1	84967770	84967770	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtacttctcttgcttcaaaaGaagatactatataataattg	5	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84967770	A	A	84967770	1	1	207	0	1	0	0	0	0	0	0	0	6594	957	33	4		4	GNG5	1	84967770	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	21217	84967770	164282851	49	162179											
COL24A1	255631	broad.mit.edu	37	chr1	86252065	86252065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaattcctgggcttcctGgcaagcctgatgaacccttt	9	12	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86252065	T	T	86252065	3	4	207	1	0	0	0	0	1	0	0	0	3715	1348	47	2	1165	2	COL24A1	1	86252065	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1284295	86252065	162998556	50	162180											
TMEM56	148534	broad.mit.edu	37	chr1	95614448	95614448	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagaaaacatattgatcGtatatgccttattaaaatgc	5	6	0	2	rs141807553	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95614448	T	T	95614448	1	4	207	0	1	0	0	0	0	0	0	0	16306	1160	40	3		3	TMEM56	1	95614448	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	9362383	95614448	153636173	51	162181											
LPPR4	9890	broad.mit.edu	37	chr1	99772505	99772505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaaagaagcaacagccCcgaaaacactagaaatatct	6	12	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99772505	A	A	99772505	3	1	207	1	0	0	0	0	1	0	0	0	9014	623	22	2	2257	2	LPPR4	1	99772505	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4158057	99772505	149478116	52	162182											
CDC14A	8556	broad.mit.edu	37	chr1	100960517	100960517	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaacacttcaatttataGtgtgcttccctttgtgaata	5	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100960517	A	A	100960517	1	1	207	0	1	0	0	0	0	0	0	0	3086	1044	36	4		4	CDC14A	1	100960517	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1188012	100960517	148290104	53	162183											
PRMT6	55170	broad.mit.edu	37	chr1	107600116	107600116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagctagagctctcccGcgccggcttggagcaggagc	14	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107600116	T	T	107600116	3	4	207	1	0	0	0	0	1	0	0	0	12646	1087	38	3	781	3	PRMT6	1	107600116	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	6639599	107600116	141650505	54	162184											
NTNG1	22854	broad.mit.edu	37	chr1	107867132	107867132	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatctgggcgtccagacCaaatgatcctggagaagtct	11	9	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107867132	A	A	107867132	3	1	207	1	0	0	0	0	1	0	0	0	10799	595	21	2	481	2	NTNG1	1	107867132	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	267016	107867132	141383489	55	162185											
WDR47	22911	broad.mit.edu	37	chr1	109538480	109538480	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctataaaattaaacaatgtaAtcattttaaaataaaaactt	1	4	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109538480	G	G	109538480	1	3	207	0	1	0	0	0	0	0	0	0	17427	116	4	5		5	WDR47	1	109538480	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1671348	109538480	139712141	56	162186											
RAP1A	5906	broad.mit.edu	37	chr1	112190881	112190881	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttttattggcttcctgctCcccaaagggtaccctgcttc	7	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112190881	T	T	112190881	1	4	207	0	1	0	0	0	0	0	0	0	13143	870	30	4		4	RAP1A	1	112190881	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2652401	112190881	137059740	57	162187											
ST7L	54879	broad.mit.edu	37	chr1	113098589	113098589	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgcttcactatcaccccGtttcagaatgtgttctggag	8	10	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113098589	T	T	113098589	2	4	207	1	0	0	0	0	0	0	0	1	15348	1144	40	3		3	ST7L	1	113098589	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	907708	113098589	136152032	58	162188											
CASQ2	845	broad.mit.edu	37	chr1	116244100	116244100	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgcatgagggctgaaccaGaccagggatagccgtgctga	14	9	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116244100	T	T	116244100	1	4	207	0	1	0	0	0	0	0	0	0	2707	957	33	3		3	CASQ2	1	116244100	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3145511	116244100	133006521	59	162189											
SLC22A15	55356	broad.mit.edu	37	chr1	116569384	116569384	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatttttttttcttttctgGtgtgcctcttatagttgcca	7	7	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116569384	C	C	116569384	1	2	207	0	1	0	0	0	0	0	0	0	14559	1276	44	4		4	SLC22A15	1	116569384	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	325284	116569384	132681237	60	162190											
IGSF3	3321	broad.mit.edu	37	chr1	117150665	117150665	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcagtcacccggcagttgTatttcccgctatcttcctgg	9	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117150665	C	C	117150665	3	2	207	1	0	0	0	0	1	0	0	0	7671	1638	57	5	2555	5	IGSF3	1	117150665	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	581281	117150665	132099956	61	162191											
TBX15	6913	broad.mit.edu	37	chr1	119427303	119427303	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaggaggatctgaccacGgagactctggggccttgatt	14	8	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119427303	A	A	119427303	1	1	207	0	1	0	0	0	0	0	0	0	15774	1131	39	4		4	TBX15	1	119427303	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	2276638	119427303	129823318	62	162192											
PDE4DIP	9659	broad.mit.edu	37	chr1	145015660	145015660	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaggagggactgctgtaCaggcaagggtccataaccac	12	11	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145015660	A	A	145015660	1	1	207	0	1	0	0	0	0	0	0	0	11737	493	17	3		3	PDE4DIP	1	145015660	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	25588357	145015660	104234961	63	162193											
ADAMTSL4	54507	broad.mit.edu	37	chr1	150526056	150526056	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaagaggctattccgtccCctactccaagagcagagcca	11	13	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150526056	T	T	150526056	3	4	207	1	0	0	0	0	1	0	0	0	277	623	22	4	603	4	ADAMTSL4	1	150526056	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	5510396	150526056	98724565	64	162194											
PSMD4	5710	broad.mit.edu	37	chr1	151237896	151237896	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacagaaaagctgacagcCtttgtaaacacgttgaatgg	9	8	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151237896	T	T	151237896	2	4	207	1	0	0	0	0	0	0	0	1	12806	668	24	4		4	PSMD4	1	151237896	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	711840	151237896	98012725	65	162195											
TDRKH	11022	broad.mit.edu	37	chr1	151753941	151753941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgggaaagcagactgcCtactcacacacttacctgtt	7	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151753941	A	A	151753941	1	1	207	0	1	0	0	0	0	0	0	0	15859	696	24	2		2	TDRKH	1	151753941	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	516045	151753941	97496680	66	162196											
NPR1	4881	broad.mit.edu	37	chr1	153653755	153653755	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagcagttcaacttcaccAtggaggatggcctggtaaga	12	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153653755	C	C	153653755	3	2	207	1	0	0	0	0	1	0	0	0	10689	217	8	5	1031	5	NPR1	1	153653755	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	1899814	153653755	95596866	67	162197											
NPR1	4881	broad.mit.edu	37	chr1	153659054	153659054	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taagaagagtgagggtccctGaagctagtgagcagcttggt	15	6	0	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153659054	A	A	153659054	1	1	207	0	1	0	0	0	0	0	0	0	10689	1305	45	4		4	NPR1	1	153659054	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5299	153659054	95591567	68	162198											
FLAD1	80308	broad.mit.edu	37	chr1	154962197	154962197	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaggtgagcctgccccCgggagacaagacccctgatc	13	14	0	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154962197	T	T	154962197	1	4	207	0	1	0	0	0	0	0	0	0	5977	667	23	4		4	FLAD1	1	154962197	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1303143	154962197	94288424	69	162199											
GON4L	54856	broad.mit.edu	37	chr1	155746289	155746289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctggggatggaaagaaAatgatgaagtgacatgttac	14	4	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155746289	G	G	155746289	1	3	207	0	1	0	0	0	0	0	0	0	6636	29	1	5		5	GON4L	1	155746289	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	784092	155746289	93504332	70	162200											
SYT11	23208	broad.mit.edu	37	chr1	155838424	155838424	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttctatggcatcccctacAgccagctgcaggacctggtg	10	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155838424	T	T	155838424	3	4	207	1	0	0	0	0	1	0	0	0	15586	188	7	5	709	5	SYT11	1	155838424	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	92135	155838424	93412197	71	162201											
RXFP4	339403	broad.mit.edu	37	chr1	155911749	155911749	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaccttcgtcttcaacctGgctctggcggacctgggact	11	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155911749	A	A	155911749	2	1	207	1	0	0	0	0	0	0	0	1	13873	1335	47	4		4	RXFP4	1	155911749	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	73325	155911749	93338872	72	162202											
RAB25	57111	broad.mit.edu	37	chr1	156038319	156038319	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctttcccttgcagtctcCcagcccctgcccccacccat	4	23	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156038319	A	A	156038319	1	1	207	0	1	0	0	0	0	0	0	0	13020	638	22	2		2	RAB25	1	156038319	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	126570	156038319	93212302	73	162203											
ARHGEF11	9826	broad.mit.edu	37	chr1	156947959	156947959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcggagcttttcaacaggaCattagggtgaggaaagaaag	14	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156947959	A	A	156947959	1	1	207	0	1	0	0	0	0	0	0	0	898	493	17	3		3	ARHGEF11	1	156947959	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	909640	156947959	92302662	74	162204											
FCRL1	115350	broad.mit.edu	37	chr1	157772420	157772420	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcacctgtcctcctgggggCtgagtctccaagctcacatc	9	15	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157772420	A	A	157772420	3	1	207	1	0	0	0	0	1	0	0	0	5851	796	28	3	1033	3	FCRL1	1	157772420	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	824461	157772420	91478201	75	162205											
OR10K1	391109	broad.mit.edu	37	chr1	158435310	158435310	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcctttctggatcctggtTtctacctctgtccctgactc	6	15	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158435310	A	A	158435310	1	1	207	0	1	0	0	0	0	0	0	0	11007	1856	64	5		5	OR10K1	1	158435310	5'Flank	SNP	T	TCGA-73-4668-01A-01D-1265-08	662890	158435310	90815311	76	162206											
SPTA1	6708	broad.mit.edu	37	chr1	158606042	158606042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaaatatatcagtacttGcactagtctactctccctaa	4	11	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158606042	T	T	158606042	1	4	207	0	1	0	0	0	0	0	0	0	15234	1334	46	3		3	SPTA1	1	158606042	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	170732	158606042	90644579	77	162207											
SPTA1	6708	broad.mit.edu	37	chr1	158614875	158614875	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgagctccctttgtgtttAtaacgtggaaagtctagtga	11	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158614875	G	G	158614875	1	3	207	0	1	0	0	0	0	0	0	0	15234	464	16	5		5	SPTA1	1	158614875	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	8833	158614875	90635746	78	162208											
SPTA1	6708	broad.mit.edu	37	chr1	158641788	158641788	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggaactcatggtagtcaTggtggcaaatgaagggtgag	17	4	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158641788	C	C	158641788	1	2	207	0	1	0	0	0	0	0	0	0	15234	1479	51	5		5	SPTA1	1	158641788	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	26913	158641788	90608833	79	162209											
SPTA1	6708	broad.mit.edu	37	chr1	158644088	158644088	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgactacatatataattgGaatttgacaaactctgttaa	5	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158644088	A	A	158644088	1	1	207	0	1	0	0	0	0	0	0	0	15234	1189	41	4		4	SPTA1	1	158644088	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2300	158644088	90606533	80	162210											
SPTA1	6708	broad.mit.edu	37	chr1	158654895	158654895	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcaatcaagagaactgagtGacctgtatattagttgggtc	12	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158654895	A	A	158654895	1	1	207	0	1	0	0	0	0	0	0	0	15234	1305	45	4		4	SPTA1	1	158654895	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	10807	158654895	90595726	81	162211											
OR6K6	128371	broad.mit.edu	37	chr1	158724584	158724584	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caggattccagaatcagcttGagtaactcattacagaaagg	9	8	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158724584	A	A	158724584	1	1	207	0	1	0	0	0	0	0	0	0	11298	1305	45	4		4	OR6K6	1	158724584	5'Flank	SNP	G	TCGA-73-4668-01A-01D-1265-08	69689	158724584	90526037	82	162212											
ATP1A2	477	broad.mit.edu	37	chr1	160091192	160091192	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggcccaaggacatgcagcTagttggtggcacagccagaa	13	11	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160091192	A	A	160091192	1	1	207	0	1	0	0	0	0	0	0	0	1133	1537	53	5		5	ATP1A2	1	160091192	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1366608	160091192	89159429	83	162213											
SLAMF6	114836	broad.mit.edu	37	chr1	160460355	160460355	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagacaagtaggaagaaaGgaaacctgcctcttcttttc	9	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160460355	C	C	160460355	1	2	207	0	1	0	0	0	0	0	0	0	14481	1015	35	4		4	SLAMF6	1	160460355	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	369163	160460355	88790266	84	162214											
SLAMF6	114836	broad.mit.edu	37	chr1	160461212	160461212	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaaaaagatccagattaagGacaaatgtcttggctcaacc	7	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160461212	A	A	160461212	1	1	207	0	1	0	0	0	0	0	0	0	14481	1189	41	4		4	SLAMF6	1	160461212	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	857	160461212	88789409	85	162215											
ITLN1	55600	broad.mit.edu	37	chr1	160851184	160851184	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatgcaacttcagctggaCtgtgagagctctggactcca	10	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160851184	A	A	160851184	1	1	207	0	1	0	0	0	0	0	0	0	7980	580	20	3		3	ITLN1	1	160851184	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	389972	160851184	88399437	86	162216											
DDR2	4921	broad.mit.edu	37	chr1	162725667	162725667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaatcagtatttatttaGttcttgtacaaggcatttgg	7	6	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162725667	T	T	162725667	1	4	207	0	1	0	0	0	0	0	0	0	4370	1044	36	3		3	DDR2	1	162725667	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1874483	162725667	86524954	87	162217											
RGS4	5999	broad.mit.edu	37	chr1	163044500	163044500	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgagtcacttctacgcAtaaactagatatagcttttg	8	7	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163044500	G	G	163044500	1	3	207	0	1	0	0	0	0	0	0	0	13416	232	8	5		5	RGS4	1	163044500	3'UTR	SNP	A	TCGA-73-4668-01A-01D-1265-08	318833	163044500	86206121	88	162218											
RGS5	8490	broad.mit.edu	37	chr1	163117163	163117163	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctgataaaactcagagCgcacaaagcgaggcagagaa	10	10	1	3	rs147130564	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163117163	T	T	163117163	3	4	207	1	0	0	0	0	1	0	0	0	13417	768	27	4	34	4	RGS5	1	163117163	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	72663	163117163	86133458	89	162219											
NUF2	83540	broad.mit.edu	37	chr1	163297419	163297419	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgttttgttttgctgcaGttctgcttacaatgcatact	8	7	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163297419	C	C	163297419	1	2	207	0	1	0	0	0	0	0	0	0	10842	1044	36	4		4	NUF2	1	163297419	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	180256	163297419	85953202	90	162220											
NUF2	83540	broad.mit.edu	37	chr1	163298127	163298127	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattttattgtcttcgtctAcattcgtatttatattacat	4	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163298127	T	T	163298127	1	4	207	0	1	0	0	0	0	0	0	0	10842	406	14	5		5	NUF2	1	163298127	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	708	163298127	85952494	91	162221											
LMX1A	4009	broad.mit.edu	37	chr1	165175280	165175280	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtttgtctgagctgtggaaCaaagaagaagccaggtcatt	12	7	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165175280	A	A	165175280	1	1	207	0	1	0	0	0	0	0	0	0	8935	493	17	3		3	LMX1A	1	165175280	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1877153	165175280	84075341	92	162222											
DUSP27	92235	broad.mit.edu	37	chr1	167088687	167088687	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagttcctggatgaggcGctgctgacttacagaggtga	14	8	1	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167088687	T	T	167088687	2	4	207	1	0	0	0	0	0	0	0	1	4864	1074	38	3		3	DUSP27	1	167088687	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1913407	167088687	82161934	93	162223											
DUSP27	92235	broad.mit.edu	37	chr1	167096318	167096318	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaagctgggaggcggacagCtccacggccagcgggagcat	17	12	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167096318	A	A	167096318	3	1	207	1	0	0	0	0	1	0	0	0	4864	796	28	3	1968	3	DUSP27	1	167096318	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	7631	167096318	82154303	94	162224											
ADCY10	55811	broad.mit.edu	37	chr1	167805893	167805893	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attccagcagtttgggaggcCgaagctggtggatcatctga	14	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167805893	T	T	167805893	1	4	207	0	1	0	0	0	0	0	0	0	293	667	23	4		4	ADCY10	1	167805893	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	709575	167805893	81444728	95	162225											
FMO2	2327	broad.mit.edu	37	chr1	171178107	171178107	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattagtatcgcctggttggGcctgggcaatgggaaggagc	16	7	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171178107	T	T	171178107	1	4	207	0	1	0	0	0	0	0	0	0	6013	1218	42	3		3	FMO2	1	171178107	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	3372214	171178107	78072514	96	162226											
C1orf9	51430	broad.mit.edu	37	chr1	172501593	172501593	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagaaaaagcgaaaggtTttccgctgcaaccaatcaga	10	8	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	172501593	G	G	172501593	1	3	207	0	1	0	0	0	0	0	0	0	2089	1856	64	5		5	C1orf9	1	172501593	5'Flank	SNP	T	TCGA-73-4668-01A-01D-1265-08	1323486	172501593	76749028	97	162227											
TNR	7143	broad.mit.edu	37	chr1	175323529	175323529	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggccatgctccctcacctGtggtgaaagcggtggaggtg	16	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175323529	C	C	175323529	3	2	207	1	0	0	0	0	1	0	0	0	16461	1377	48	4	720	4	TNR	1	175323529	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2821936	175323529	73927092	98	162228											
TNR	7143	broad.mit.edu	37	chr1	175332817	175332817	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcacccaaatcctagtatCtttgagaaatcaaatcactt	3	11	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175332817	A	A	175332817	1	1	207	0	1	0	0	0	0	0	0	0	16461	928	32	3		3	TNR	1	175332817	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	9288	175332817	73917804	99	162229											
TNR	7143	broad.mit.edu	37	chr1	175396979	175396979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctttcctccctcccttcCctcttttttccttccttcct	0	20	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175396979	A	A	175396979	1	1	207	0	1	0	0	0	0	0	0	0	16461	638	22	2		2	TNR	1	175396979	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	64162	175396979	73853642	100	162230											
ASTN1	460	broad.mit.edu	37	chr1	176992651	176992651	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagagaaccacttgggcagGgttcagccagtcactggcat	13	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176992651	A	A	176992651	3	1	207	1	0	0	0	0	1	0	0	0	1068	1232	43	4	2629	4	ASTN1	1	176992651	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1595672	176992651	72257970	101	162231											
FAM5B	57795	broad.mit.edu	37	chr1	177199316	177199316	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactgagacaggggcttccCtaagaacccaacctgcacag	9	15	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177199316	G	G	177199316	1	3	207	0	1	0	0	0	0	0	0	0	5644	696	24	4		4	FAM5B	1	177199316	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	206665	177199316	72051305	102	162232											
SEC16B	89866	broad.mit.edu	37	chr1	177937180	177937180	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttattttatcttcctgcaGacaaaagaaaaaggaaaaaa	6	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177937180	T	T	177937180	1	4	207	0	1	0	0	0	0	0	0	0	14100	957	33	3		3	SEC16B	1	177937180	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	737864	177937180	71313441	103	162233											
ABL2	27	broad.mit.edu	37	chr1	179077769	179077769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactccagccactcccaccCctggagggtccttctctgta	7	19	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179077769	A	A	179077769	3	1	207	1	0	0	0	0	1	0	0	0	93	623	22	2	919	2	ABL2	1	179077769	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1140589	179077769	70172852	104	162234											
ABL2	27	broad.mit.edu	37	chr1	179191281	179191281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcgcattctatgaaaagcCtagaagaacaggatactctg	8	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179191281	A	A	179191281	1	1	207	0	1	0	0	0	0	0	0	0	93	696	24	2		2	ABL2	1	179191281	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	113512	179191281	70059340	105	162235											
SOAT1	6646	broad.mit.edu	37	chr1	179312689	179312689	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcaagttcaattactttAtttagaaaccttatttttgt	3	5	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179312689	T	T	179312689	1	4	207	0	1	0	0	0	0	0	0	0	15024	464	16	5		5	SOAT1	1	179312689	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	121408	179312689	69937932	106	162236											
LHX4	89884	broad.mit.edu	37	chr1	180243319	180243319	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctccgttcttttgtccacaGaggatcaaattctctcagaa	6	11	5	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180243319	A	A	180243319	5	1	207	1	0	0	0	0	0	0	1	0	8845	956	33	4	800	4	LHX4	1	180243319	Splice_Site	SNP	G	TCGA-73-4668-01A-01D-1265-08	930630	180243319	69007302	107	162237											
STX6	10228	broad.mit.edu	37	chr1	180934680	180934680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgtggggtgacgtagaCcaaaggatgcttccagccat	14	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180934680	A	A	180934680	1	1	207	0	1	0	0	0	0	0	0	0	15467	522	18	3		3	STX6	1	180934680	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	691361	180934680	68315941	108	162238											
CACNA1E	777	broad.mit.edu	37	chr1	181620564	181620564	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttctcaacctagtcctgGgagtgctttccgggtgagcc	12	11	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181620564	C	C	181620564	3	2	207	1	0	0	0	0	1	0	0	0	2568	1233	43	4	1068	4	CACNA1E	1	181620564	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	685884	181620564	67630057	109	162239											
CACNA1E	777	broad.mit.edu	37	chr1	181702074	181702074	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgcagtctggatgaagCcatgcccactgaaggggaga	15	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181702074	T	T	181702074	3	4	207	1	0	0	0	0	1	0	0	0	2568	739	26	4	2930	4	CACNA1E	1	181702074	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	81510	181702074	67548547	110	162240											
FAM129A	116496	broad.mit.edu	37	chr1	184787670	184787670	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agggcagaagaatggaaggaAggaaagaagggaggaaggga	20	1	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184787670	T	T	184787670	1	4	207	0	1	0	0	0	0	0	0	0	5482	87	3	5		5	FAM129A	1	184787670	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3085596	184787670	64462951	111	162241											
HMCN1	83872	broad.mit.edu	37	chr1	186083241	186083242	+	Missense_Mutation	DNP	TG	AA	AA													aaggatggagctgttctagcTgggaatcatgcaaggtaacc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	186083242	AA	AA	186083241	3	1	207	1	0	0	0	0	1	0	0	0	7287	1567	55	5	11552	5	HMCN1	1	186083241	Missense_Mutation	DNP	TG	TCGA-73-4668-01A-01D-1265-08	1295571	186083241	63167380	112	162242											
UCHL5	51377	broad.mit.edu	37	chr1	192998665	192998665	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaagattgtactcacagcTgcatcaaaactttgtgaaaa	7	7	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192998665	A	A	192998665	2	1	207	1	0	0	0	0	0	0	0	1	17048	1567	55	5		5	UCHL5	1	192998665	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	6915424	192998665	56251956	113	162243											
UCHL5	51377	broad.mit.edu	37	chr1	193028607	193028607	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatcgaaactcttcccagGccttgcagcacccgtagcgg	10	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	193028607	T	T	193028607	1	4	207	0	1	0	0	0	0	0	0	0	17048	1218	42	3		3	UCHL5	1	193028607	5'Flank	SNP	G	TCGA-73-4668-01A-01D-1265-08	29942	193028607	56222014	114	162244											
KCNT2	343450	broad.mit.edu	37	chr1	196342230	196342230	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgcccttattgttttttaTataatttaaaaggttaactt	4	5	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196342230	C	C	196342230	1	2	207	0	1	0	0	0	0	0	0	0	8162	1421	49	5		5	KCNT2	1	196342230	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	3313623	196342230	52908391	115	162245											
CFH	3075	broad.mit.edu	37	chr1	196645149	196645149	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtgagattaattaccgTgaatgtgacacagatggatg	12	5	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196645149	C	C	196645149	2	2	207	1	0	0	0	0	0	0	0	1	3313	1683	59	5		5	CFH	1	196645149	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	302919	196645149	52605472	116	162246											
CFH	3075	broad.mit.edu	37	chr1	196646761	196646761	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagaaatgcattgttcagacGatggtttttggagtaaagag	12	3	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	196646761	C	C	196646761	3	2	207	1	0	0	0	0	1	0	0	0	3313	1058	37	4	601	4	CFH	1	196646761	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1612	196646761	52603860	117	162247											
CFH	3075	broad.mit.edu	37	chr1	196706113	196706113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatgcaaagatggaagatGgcagtcaataccactctgtg	10	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196706113	T	T	196706113	3	4	207	1	0	0	0	0	1	0	0	0	3313	1357	47	2	2653	2	CFH	1	196706113	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	59352	196706113	52544508	118	162248											
F13B	2165	broad.mit.edu	37	chr1	197019821	197019821	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagaggcatatttagtagtAcatacctaaacacaatggtg	8	6	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	197019821	G	G	197019821	1	3	207	0	1	0	0	0	0	0	0	0	5384	406	14	5		5	F13B	1	197019821	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	313708	197019821	52230800	119	162249											
F13B	2165	broad.mit.edu	37	chr1	197029536	197029536	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaccaaccaaagttataGcattgaattaaatcagatcc	7	8	1	2	rs5994	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197029536	T	T	197029536	4	4	207	1	0	0	0	0	0	1	0	0	5384	963	34	3	1252	3	F13B	1	197029536	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	9715	197029536	52221085	120	162250											
DENND1B	163486	broad.mit.edu	37	chr1	197643291	197643291	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaactttggcacactctgTagtatttcctacaaatggaa	7	9	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197643291	C	C	197643291	2	2	207	1	0	0	0	0	0	0	0	1	4467	1625	57	5		5	DENND1B	1	197643291	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	613755	197643291	51607330	121	162251											
CACNA1S	779	broad.mit.edu	37	chr1	201018109	201018109	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccctccctggggccaccCatccctggcagctctggtta	9	18	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201018109	A	A	201018109	1	1	207	0	1	0	0	0	0	0	0	0	2573	609	21	2		2	CACNA1S	1	201018109	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3374818	201018109	48232512	122	162252											
IGFN1	91156	broad.mit.edu	37	chr1	201195114	201195114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcacgaggcagccgaccGcatccacaccaaccgcttca	9	18	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201195114	T	T	201195114	3	4	207	1	0	0	0	0	1	0	0	0	7660	1087	38	3	10731	3	IGFN1	1	201195114	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	177005	201195114	48055507	123	162253											
PKP1	5317	broad.mit.edu	37	chr1	201253095	201253095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccctggcccagtggcgGggaccaagagacgcacgcat	14	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201253095	T	T	201253095	1	4	207	0	1	0	0	0	0	0	0	0	12079	1247	43	2		2	PKP1	1	201253095	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	57981	201253095	47997526	124	162254											
ATP2B4	493	broad.mit.edu	37	chr1	203669880	203669880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcataccaaatcatgtctaGgtattaaaaaacccattcct	3	10	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203669880	T	T	203669880	1	4	207	0	1	0	0	0	0	0	0	0	1146	1015	35	2		2	ATP2B4	1	203669880	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2416785	203669880	45580741	125	162255											
PLEKHA6	22874	broad.mit.edu	37	chr1	204228807	204228807	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggcttagggaggctgtTgtggggtggctgctggtggt	20	6	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204228807	A	A	204228807	3	1	207	1	0	0	0	0	1	0	0	0	12155	1812	63	5	2620	5	PLEKHA6	1	204228807	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	558927	204228807	45021814	126	162256											
TMEM81	388730	broad.mit.edu	37	chr1	205053177	205053177	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccaatgagaatggtgaaaTggagcatcccacagatccag	11	9	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	205053177	C	C	205053177	3	2	207	1	0	0	0	0	1	0	0	0	16328	1464	51	5	499	5	TMEM81	1	205053177	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	824370	205053177	44197444	127	162257											
PIGR	5284	broad.mit.edu	37	chr1	207110897	207110897	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagtaactggccagtaccCtgaatatcaaggcgtattct	8	10	2	1	rs141346783		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207110897	T	T	207110897	2	4	207	1	0	0	0	0	0	0	0	1	11992	680	24	4		4	PIGR	1	207110897	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2057720	207110897	42139724	128	162258											
FCAMR	83953	broad.mit.edu	37	chr1	207135748	207135748	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactggttggtggacacaatGgtctggcagatccatcttgg	13	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207135748	T	T	207135748	2	4	207	1	0	0	0	0	0	0	0	1	5829	1335	47	2		2	FCAMR	1	207135748	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	24851	207135748	42114873	129	162259											
C1orf107	27042	broad.mit.edu	37	chr1	210006653	210006653	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgttcagcctggaaaccaAttttctggaagaggaaagtg	11	7	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210006653	T	T	210006653	3	4	207	1	0	0	0	0	1	0	0	0	2001	101	4	5	526	5	C1orf107	1	210006653	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	2870905	210006653	39243968	130	162260											
ESRRG	2104	broad.mit.edu	37	chr1	216824369	216824369	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcggcaagcctggcaggAtttacgtctgcgctttgtga	14	9	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	216824369	G	G	216824369	3	3	207	1	0	0	0	0	1	0	0	0	5304	333	12	5	861	5	ESRRG	1	216824369	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	6817716	216824369	32426252	131	162261											
MARK1	4139	broad.mit.edu	37	chr1	220799160	220799160	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaattaatattatagacaaGaccatccaatgaagcctcac	5	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220799160	T	T	220799160	1	4	207	0	1	0	0	0	0	0	0	0	9404	957	33	3		3	MARK1	1	220799160	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3974791	220799160	28451461	132	162262											
MOSC2	54996	broad.mit.edu	37	chr1	220955126	220955126	+	Frame_Shift_Del	DEL	C	-	-													tttgcttgtttcagctaccgCctgtgtgatccttctgagag							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220955126	-	-	220955126	7	5	207	1	0	1	0	1	0	0	0	0	9808	726	26	0	917	0	MOSC2	1	220955126	Frame_Shift_Del	DEL	C	TCGA-73-4668-01A-01D-1265-08	155966	220955126	28295495	133	162263											
MIA3	375056	broad.mit.edu	37	chr1	222805592	222805592	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaagaacccacccacttGgaccaacgtgtgattgggga	11	12	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222805592	A	A	222805592	2	1	207	1	0	0	0	0	0	0	0	1	9658	1339	47	4		4	MIA3	1	222805592	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1850466	222805592	26445029	134	162264											
DISP1	84976	broad.mit.edu	37	chr1	223178964	223178964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactcaaaacgtgttgcgacCccgagaataaacaaagggaa	9	9	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223178964	A	A	223178964	3	1	207	1	0	0	0	0	1	0	0	0	4579	623	22	2	4251	2	DISP1	1	223178964	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	373372	223178964	26071657	135	162265											
OBSCN	84033	broad.mit.edu	37	chr1	228524067	228524067	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccaggggtggctcctgGcctcagaggcccctcctgag	14	16	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228524067	A	A	228524067	1	1	207	0	1	0	0	0	0	0	0	0	10907	1218	42	4		4	OBSCN	1	228524067	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5345103	228524067	20726554	136	162266											
DISC1	27185	broad.mit.edu	37	chr1	231935828	231935828	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttagctgaataaatgatgAttcctggtcatttctctccc	6	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231935828	G	G	231935828	1	3	207	0	1	0	0	0	0	0	0	0	4578	348	12	5		5	DISC1	1	231935828	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3411761	231935828	17314793	137	162267											
PCNXL2	80003	broad.mit.edu	37	chr1	233313730	233313730	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccttagatctcacaccCacacatgacaaaaacaagtg	4	13	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233313730	A	A	233313730	1	1	207	0	1	0	0	0	0	0	0	0	11686	609	21	2		2	PCNXL2	1	233313730	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1377902	233313730	15936891	138	162268											
GNG4	2786	broad.mit.edu	37	chr1	235747244	235747244	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcttctctgtccaagccaGggagcatctgggagcatgga	13	11	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235747244	C	C	235747244	1	2	207	0	1	0	0	0	0	0	0	0	6593	1015	35	4		4	GNG4	1	235747244	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2433514	235747244	13503377	139	162269											
LYST	1130	broad.mit.edu	37	chr1	235973133	235973133	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaagatgcaacactgttcGaaagagcatcctttgaatca	8	9	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235973133	T	T	235973133	2	4	207	1	0	0	0	0	0	0	0	1	9216	1066	37	3		3	LYST	1	235973133	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	225889	235973133	13277488	140	162270											
RYR2	6262	broad.mit.edu	37	chr1	237754044	237754044	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatatcatgttttatcgcctGagcatgccgatcgagtgcgc	11	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237754044	A	A	237754044	2	1	207	1	0	0	0	0	0	0	0	1	13880	1277	45	4		4	RYR2	1	237754044	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1780911	237754044	11496577	141	162271											
RYR2	6262	broad.mit.edu	37	chr1	237778129	237778129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaatgaaactgccagagCcagttaaattgcaggtaatc	8	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237778129	A	A	237778129	3	1	207	1	0	0	0	0	1	0	0	0	13880	739	26	3	5847	3	RYR2	1	237778129	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	24085	237778129	11472492	142	162272											
RYR2	6262	broad.mit.edu	37	chr1	237837479	237837479	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atagagaaaaagcacaggacAtcctcaagttcttgcagatc	8	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237837479	G	G	237837479	3	3	207	1	0	0	0	0	1	0	0	0	13880	217	8	5	8908	5	RYR2	1	237837479	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	59350	237837479	11413142	143	162273											
RYR2	6262	broad.mit.edu	37	chr1	237947112	237947112	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtcgtctgatacttttaaaGaatatgaccccgatggcaag	9	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237947112	T	T	237947112	4	4	207	1	0	0	0	0	0	1	0	0	13880	943	33	3	12458	3	RYR2	1	237947112	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	109633	237947112	11303509	144	162274											
ZP4	57829	broad.mit.edu	37	chr1	238053709	238053709	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagggagacatcttaggtaGtagaggagacatatcattgc	12	5	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053709	T	T	238053709	1	4	207	0	1	0	0	0	0	0	0	0	18347	1044	36	3		3	ZP4	1	238053709	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	106597	238053709	11196912	145	162275											
AHCTF1	25909	broad.mit.edu	37	chr1	247004094	247004094	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaataggtgtacattaaaAtcttcccaagaaattacagc	5	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247004094	G	G	247004094	1	3	207	0	1	0	0	0	0	0	0	0	408	116	4	5		5	AHCTF1	1	247004094	3'UTR	SNP	A	TCGA-73-4668-01A-01D-1265-08	8950385	247004094	2246527	146	162276											
OR2W5	441932	broad.mit.edu	37	chr1	247654579	247654579	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatcatcctcttgctggtCatggatgtcaggctccacac	9	14	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247654579	A	A	247654579	2	1	207	1	0	0	0	0	0	0	0	1	11128	813	29	3		3	OR2W5	1	247654579	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	650485	247654579	1596042	147	162277											
OR11L1	391189	broad.mit.edu	37	chr1	248005246	248005246	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagcacaggatgcaaggCgcaaatttatcactggtgat	11	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248005246	A	A	248005246	1	1	207	0	1	0	0	0	0	0	0	0	11024	783	27	3		3	OR11L1	1	248005246	5'Flank	SNP	C	TCGA-73-4668-01A-01D-1265-08	350667	248005246	1245375	148	162278											
OR2T8	343172	broad.mit.edu	37	chr1	248085161	248085161	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctatactatgttcacccCtttactaaaccccctcatct	1	16	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248085161	G	G	248085161	3	3	207	1	0	0	0	0	1	0	0	0	11124	681	24	4	844	4	OR2T8	1	248085161	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	79915	248085161	1165460	149	162279											
OR2L13	284521	broad.mit.edu	37	chr1	248185416	248185416	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggacacccatctccacaCacccatgtatttcctgctta	4	16	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248185416	T	T	248185416	1	4	207	0	1	0	0	0	0	0	0	0	11100	493	17	4		4	OR2L13	1	248185416	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	100255	248185416	1065205	150	162280											
GREB1	9687	broad.mit.edu	37	chr2	11774135	11774135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccctggggggactgtgcGgggcaccggcccgtccaggt	19	13	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11774135	T	T	11774135	1	4	207	0	1	0	0	0	0	0	0	0	6826	1131	39	1		1	GREB1	2	11774135	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08		11774135	231425238	151	162281											
TRIB2	28951	broad.mit.edu	37	chr2	12880965	12880965	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttccaggagtgagcgagGgcagcggaaaggagttcttc	17	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12880965	T	T	12880965	1	4	207	0	1	0	0	0	0	0	0	0	16607	1247	43	2		2	TRIB2	2	12880965	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	1106830	12880965	230318408	152	162282											
GEN1	348654	broad.mit.edu	37	chr2	17955603	17955603	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaaattgctggtacttttGacccattatgacatgataga	9	6	0	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17955603	T	T	17955603	3	4	207	1	0	0	0	0	1	0	0	0	6399	1281	45	3	1175	3	GEN1	2	17955603	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	5074638	17955603	225243770	153	162283											
DPYSL5	56896	broad.mit.edu	37	chr2	27147680	27147680	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctttgaatggaccatgaGgaccatgtctcaccacatca	8	11	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27147680	C	C	27147680	1	2	207	0	1	0	0	0	0	0	0	0	4790	1015	35	4		4	DPYSL5	2	27147680	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	9192077	27147680	216051693	154	162284											
GCKR	2646	broad.mit.edu	37	chr2	27728447	27728447	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaatcttcctctcggtcaAgcccaccccagcacccttcc	4	20	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27728447	T	T	27728447	1	4	207	0	1	0	0	0	0	0	0	0	6356	87	3	5		5	GCKR	2	27728447	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	580767	27728447	215470926	155	162285											
GCKR	2646	broad.mit.edu	37	chr2	27728463	27728464	+	Intron	INS	-	A	A													tcaagcccaccccagcacccINSttcctcacaagcacactggg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27728464	A	A	27728463	6	5	207	0	1	1	1	0	0	0	0	0	6356	696	24	0		0	GCKR	2	27728463	Intron	INS	-	TCGA-73-4668-01A-01D-1265-08	16	27728463	215470910	156	162286											
PPP1CB	5500	broad.mit.edu	37	chr2	29001908	29001908	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggattctatgatgaatgtAagtgaaaataaagacttaga	9	2	1	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29001908	G	G	29001908	1	3	207	0	1	0	0	0	0	0	0	0	12451	377	13	5		5	PPP1CB	2	29001908	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1273445	29001908	214197465	157	162287											
XDH	7498	broad.mit.edu	37	chr2	31570317	31570317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaacccttctagctcccaCccagggagactctccaggcc	9	17	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31570317	A	A	31570317	1	1	207	0	1	0	0	0	0	0	0	0	17553	522	18	3		3	XDH	2	31570317	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2568409	31570317	211629056	158	162288											
BIRC6	57448	broad.mit.edu	37	chr2	32743962	32743962	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggccacaaattccgtactCttcatttgccagtctcaaca	5	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32743962	A	A	32743962	3	1	207	1	0	0	0	0	1	0	0	0	1444	913	32	3	11798	3	BIRC6	2	32743962	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1173645	32743962	210455411	159	162289											
CRIM1	51232	broad.mit.edu	37	chr2	36726281	36726281	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatttttgtaacattatgGtgtggaatttcaaaaattga	8	2	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36726281	T	T	36726281	1	4	207	0	1	0	0	0	0	0	0	0	3905	1276	44	3		3	CRIM1	2	36726281	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3982319	36726281	206473092	160	162290											
VIT	5212	broad.mit.edu	37	chr2	37010342	37010342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattatttttctcaggatggGggtgatgtgaaaaaaagcac	11	4	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37010342	T	T	37010342	1	4	207	0	1	0	0	0	0	0	0	0	17298	1247	43	2		2	VIT	2	37010342	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	284061	37010342	206189031	161	162291											
SULT6B1	391365	broad.mit.edu	37	chr2	37406459	37406459	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcacagaactaatggtGctatgaccgttcatttaaat	9	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37406459	T	T	37406459	1	4	207	0	1	0	0	0	0	0	0	0	15502	1334	46	3		3	SULT6B1	2	37406459	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	396117	37406459	205792914	162	162292											
GALM	130589	broad.mit.edu	37	chr2	38903143	38903143	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttcaaggtggatgggaagGagtatcacctggccattaac	12	9	2	0	rs114353506	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38903143	A	A	38903143	3	1	207	1	0	0	0	0	1	0	0	0	6267	1175	41	4	286	4	GALM	2	38903143	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1496684	38903143	204296230	163	162293											
SRBD1	55133	broad.mit.edu	37	chr2	45800477	45800477	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatacaaacatgtctcttctGgcacctgttcagatacacaa	6	11	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45800477	A	A	45800477	4	1	207	1	0	0	0	0	0	1	0	0	15251	1357	47	4	1865	4	SRBD1	2	45800477	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	6897334	45800477	197398896	164	162294											
MSH2	4436	broad.mit.edu	37	chr2	47690198	47690198	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgaattccttgtaaaacCttcatttgatcctaatctca	3	11	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47690198	T	T	47690198	3	4	207	1	0	0	0	0	1	0	0	0	9964	681	24	4	1449	4	MSH2	2	47690198	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1889721	47690198	195509175	165	162295											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48808908	48808908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcagatgctgaagttggGgtccacatcgtaccatgact	12	9	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48808908	T	T	48808908	3	4	207	1	0	0	0	0	1	0	0	0	15435	1232	43	2	1138	2	STON1-GTF2A1L	2	48808908	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1118710	48808908	194390465	166	162296											
NRXN1	9378	broad.mit.edu	37	chr2	50280503	50280503	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taattgatgtggacatctctGattgcatggcagtggctgtt	12	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50280503	T	T	50280503	4	4	207	1	0	0	0	0	0	1	0	0	10760	1294	45	3	501	3	NRXN1	2	50280503	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1471595	50280503	192918870	167	162297											
NRXN1	9378	broad.mit.edu	37	chr2	50724468	50724468	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctattgaacaggcatgtactCaccctttaactaattcaacc	4	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50724468	T	T	50724468	1	4	207	0	1	0	0	0	0	0	0	0	10760	841	29	4		4	NRXN1	2	50724468	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	443965	50724468	192474905	168	162298											
NRXN1	9378	broad.mit.edu	37	chr2	50733693	50733693	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccacgccgaactacacGcactgtgtgccactcgttat	7	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50733693	T	T	50733693	3	4	207	1	0	0	0	0	1	0	0	0	10760	1087	38	3	2393	3	NRXN1	2	50733693	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	9225	50733693	192465680	169	162299											
ASB3	51130	broad.mit.edu	37	chr2	53955772	53955772	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaacctgatttatatttgaGacaagaattattcctctagg	6	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53955772	T	T	53955772	1	4	207	0	1	0	0	0	0	0	0	0	1028	957	33	3		3	ASB3	2	53955772	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3222079	53955772	189243601	170	162300											
USP34	9736	broad.mit.edu	37	chr2	61431317	61431317	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcacttaagtctaacctattCataactgccaggggaaaaat	6	9	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61431317	A	A	61431317	1	1	207	0	1	0	0	0	0	0	0	0	17192	841	29	3		3	USP34	2	61431317	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	7475545	61431317	181768056	171	162301											
CCT4	10575	broad.mit.edu	37	chr2	62099829	62099829	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acccaacactttgggaggatGaggcgggtggctaacgaggt	16	8	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62099829	A	A	62099829	1	1	207	0	1	0	0	0	0	0	0	0	2985	1305	45	4		4	CCT4	2	62099829	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	668512	62099829	181099544	172	162302											
MEIS1	4211	broad.mit.edu	37	chr2	66691209	66691209	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataagggttcacagatgcctCttatttgggtttctgatttg	10	6	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66691209	A	A	66691209	1	1	207	0	1	0	0	0	0	0	0	0	9560	928	32	3		3	MEIS1	2	66691209	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4591380	66691209	176508164	173	162303											
ANTXR1	84168	broad.mit.edu	37	chr2	69298889	69298889	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcatatgtttttcaggccAgtgagcagatttattatgaa	8	5	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69298889	T	T	69298889	3	4	207	1	0	0	0	0	1	0	0	0	711	188	7	5	400	5	ANTXR1	2	69298889	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	2607680	69298889	173900484	174	162304											
ANTXR1	84168	broad.mit.edu	37	chr2	69420348	69420348	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcactaatcccatcatgaccAtattgacagtgttgtgttgt	7	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69420348	T	T	69420348	1	4	207	0	1	0	0	0	0	0	0	0	711	232	8	5		5	ANTXR1	2	69420348	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	121459	69420348	173779025	175	162305											
CYP26B1	56603	broad.mit.edu	37	chr2	72361919	72361919	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatggtcatctccttccCgtgctccttgctgctctcaa	7	16	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72361919	T	T	72361919	3	4	207	1	0	0	0	0	1	0	0	0	4189	652	23	4	718	4	CYP26B1	2	72361919	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2941571	72361919	170837454	176	162306											
CYP26B1	56603	broad.mit.edu	37	chr2	72362137	72362137	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccagcctcctcctacccCacgctgacacctctcccctt	3	23	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72362137	T	T	72362137	1	4	207	0	1	0	0	0	0	0	0	0	4189	609	21	4		4	CYP26B1	2	72362137	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	218	72362137	170837236	177	162307											
SFXN5	94097	broad.mit.edu	37	chr2	73188228	73188228	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaaacagcaccccctgcCctgccctgcccttgagcccc	6	23	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73188228	A	A	73188228	1	1	207	0	1	0	0	0	0	0	0	0	14311	638	22	2		2	SFXN5	2	73188228	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	826091	73188228	170011145	178	162308											
TET3	200424	broad.mit.edu	37	chr2	74320686	74320686	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaatagcgattgactgcCgtctggggctgaaggaagga	16	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74320686	T	T	74320686	3	4	207	1	0	0	0	0	1	0	0	0	15893	652	23	4	2781	4	TET3	2	74320686	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1132458	74320686	168878687	179	162309											
CCDC142	84865	broad.mit.edu	37	chr2	74709006	74709006	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtccctccagggtcccagaTttaggtccagactctgagca	11	13	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74709006	A	A	74709006	3	1	207	1	0	0	0	0	1	0	0	0	2802	1493	52	5	1308	5	CCDC142	2	74709006	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	388320	74709006	168490367	180	162310											
REG1B	5968	broad.mit.edu	37	chr2	79313531	79313531	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaatccagacattgctgtCatcagtgctactctccttaa	6	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79313531	A	A	79313531	3	1	207	1	0	0	0	0	1	0	0	0	13319	826	29	3	229	3	REG1B	2	79313531	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4604525	79313531	163885842	181	162311											
THNSL2	55258	broad.mit.edu	37	chr2	88472749	88472749	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggctatgcacctgacgGgggcctctttatgcctgaag	12	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88472749	T	T	88472749	3	4	207	1	0	0	0	0	1	0	0	0	15986	1232	43	2	82	2	THNSL2	2	88472749	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	9159218	88472749	154726624	182	162312											
STARD7	56910	broad.mit.edu	37	chr2	96853011	96853011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccgtttggggattgtcaCtgtatgttagtaagtagtca	11	6	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96853011	A	A	96853011	3	1	207	1	0	0	0	0	1	0	0	0	15380	565	20	3	248	3	STARD7	2	96853011	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	8380262	96853011	146346362	183	162313											
ANKRD36	375248	broad.mit.edu	37	chr2	97784159	97784159	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatattacggatttctttGgaaggactgctctgcactac	8	9	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97784159	T	T	97784159	4	4	207	1	0	0	0	0	0	1	0	0	665	1349	47	2	401	2	ANKRD36	2	97784159	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	931148	97784159	145415214	184	162314											
EIF5B	9669	broad.mit.edu	37	chr2	99976702	99976702	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgttttcatttaagcacCaaggatgacattgatcttga	7	6	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99976702	T	T	99976702	2	4	207	1	0	0	0	0	0	0	0	1	5086	581	21	4		4	EIF5B	2	99976702	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2192543	99976702	143222671	185	162315											
SLC9A4	389015	broad.mit.edu	37	chr2	103095688	103095688	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccgtgctagccgtgtttgAggaagcgcgcgtgaacgagc	17	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103095688	G	G	103095688	3	3	207	1	0	0	0	0	1	0	0	0	14830	304	11	5	653	5	SLC9A4	2	103095688	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	3118986	103095688	140103685	186	162316											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105924698	105924698	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatgttgacgcgctccttgtCgcccatcagcagctcccgct	9	16	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105924698	A	A	105924698	3	1	207	1	0	0	0	0	1	0	0	0	15947	884	31	3	2565	3	TGFBRAP1	2	105924698	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2829010	105924698	137274675	187	162317											
RGPD4	285190	broad.mit.edu	37	chr2	108488462	108488462	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagagagagatggacagtaCtttgaacctgttgttccttt	11	6	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108488462	A	A	108488462	4	1	207	1	0	0	0	0	0	1	0	0	13396	576	20	3	4080	3	RGPD4	2	108488462	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2563764	108488462	134710911	188	162318											
ANAPC1	64682	broad.mit.edu	37	chr2	112604604	112604604	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagctcctctacaaagcTaagaacttgatccagtggct	7	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112604604	A	A	112604604	1	1	207	0	1	0	0	0	0	0	0	0	598	1537	53	5		5	ANAPC1	2	112604604	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	4116142	112604604	130594769	189	162319											
TMEM87B	84910	broad.mit.edu	37	chr2	112834999	112834999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatacatttattttagataCttaaaatgtaacattaagtt	3	4	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112834999	A	A	112834999	1	1	207	0	1	0	0	0	0	0	0	0	16334	580	20	3		3	TMEM87B	2	112834999	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	230395	112834999	130364374	190	162320											
TMEM87B	84910	broad.mit.edu	37	chr2	112849175	112849175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaaattaaatcttttatGtggctttgtaaagtaatgag	9	2	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112849175	T	T	112849175	1	4	207	0	1	0	0	0	0	0	0	0	16334	1392	48	3		3	TMEM87B	2	112849175	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	14176	112849175	130350198	191	162321											
CHCHD5	84269	broad.mit.edu	37	chr2	113343710	113343710	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgagtgcgggcaagtatGagacagtgtggggggtgggc	21	5	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113343710	A	A	113343710	1	1	207	0	1	0	0	0	0	0	0	0	3350	1305	45	4		4	CHCHD5	2	113343710	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	494535	113343710	129855663	192	162322											
IL1F8	27177	broad.mit.edu	37	chr2	113786676	113786676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaacacaaaggaaaatGgagaagatgtttcagtcttt	10	5	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113786676	T	T	113786676	1	4	207	0	1	0	0	0	0	0	0	0	7726	1363	47	2		2	IL1F8	2	113786676	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	442966	113786676	129412697	193	162323											
IWS1	55677	broad.mit.edu	37	chr2	128261073	128261073	+	Frame_Shift_Del	DEL	C	-	-													ctgtcagatgctatggtcttCtctcttttgcctgacttgtc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	128261073	-	-	128261073	7	5	207	1	0	1	0	1	0	0	0	0	8001	912	32	0	1204	0	IWS1	2	128261073	Frame_Shift_Del	DEL	C	TCGA-73-4668-01A-01D-1265-08	14474397	128261073	114938300	194	162324											
GPR148	344561	broad.mit.edu	37	chr2	131486606	131486606	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcattcctaaggcctgccCgagcctggcatctctacaga	9	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131486606	G	G	131486606	1	3	207	0	1	0	0	0	0	0	0	0	6718	667	23	4		4	GPR148	2	131486606	5'Flank	SNP	C	TCGA-73-4668-01A-01D-1265-08	3225533	131486606	111712767	195	162325											
PLEKHB2	55041	broad.mit.edu	37	chr2	131951131	131951131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgctcagtgcgcctcagCagtgccatcactctttctga	10	13	5	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131951131	A	A	131951131	1	1	207	0	1	0	0	0	0	0	0	0	12160	725	25	3		3	PLEKHB2	2	131951131	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	464525	131951131	111248242	196	162326											
LCT	3938	broad.mit.edu	37	chr2	136569909	136569909	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctcattgatatattgattGaagtagtctactcttaagga	7	6	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136569909	T	T	136569909	3	4	207	1	0	0	0	0	1	0	0	0	8765	1281	45	3	3502	3	LCT	2	136569909	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	4618778	136569909	106629464	197	162327											
SPOPL	339745	broad.mit.edu	37	chr2	139316626	139316626	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agattcagtaaacatatcagGacatactaatacaaatactt	4	7	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139316626	C	C	139316626	3	2	207	1	0	0	0	0	1	0	0	0	15203	1174	41	4	533	4	SPOPL	2	139316626	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2746717	139316626	103882747	198	162328											
NXPH2	11249	broad.mit.edu	37	chr2	139429232	139429232	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttccttactgtcacaaaAtagctgtttgaaaagaagaa	6	8	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139429232	G	G	139429232	3	3	207	1	0	0	0	0	1	0	0	0	10886	101	4	5	743	5	NXPH2	2	139429232	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	112606	139429232	103770141	199	162329											
LRP1B	53353	broad.mit.edu	37	chr2	141135743	141135743	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttttgattttacaaagatGcctacctcatcagagccatc	5	11	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141135743	A	A	141135743	1	1	207	0	1	0	0	0	0	0	0	0	9042	1334	46	4		4	LRP1B	2	141135743	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1706511	141135743	102063630	200	162330											
LRP1B	53353	broad.mit.edu	37	chr2	141641433	141641433	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggggtgttccatggctccTgctattagtgtagttcttag	12	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141641433	A	A	141641433	2	1	207	1	0	0	0	0	0	0	0	1	9042	1567	55	5		5	LRP1B	2	141641433	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	505690	141641433	101557940	201	162331											
LRP1B	53353	broad.mit.edu	37	chr2	141819767	141819767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgtctttgaatcaattatCcttgttcggttcatcccatc	5	11	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141819767	A	A	141819767	3	1	207	1	0	0	0	0	1	0	0	0	9042	854	30	3	13046	3	LRP1B	2	141819767	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	178334	141819767	101379606	202	162332											
ACVR2A	92	broad.mit.edu	37	chr2	148653787	148653787	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaattactgacactttaggAatacctaaagttgctatctt	6	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148653787	T	T	148653787	1	4	207	0	1	0	0	0	0	0	0	0	223	261	9	5		5	ACVR2A	2	148653787	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	6834020	148653787	94545586	203	162333											
TNFAIP6	7130	broad.mit.edu	37	chr2	152235769	152235769	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacctctgaattctgggaatCttgttcatgaattcttatat	7	7	5	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152235769	G	G	152235769	1	3	207	0	1	0	0	0	0	0	0	0	16398	928	32	4		4	TNFAIP6	2	152235769	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3581982	152235769	90963604	204	162334											
RIF1	55183	broad.mit.edu	37	chr2	152295112	152295112	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaatttatttgtttaaTgtaaggaagtaaagggagag	11	1	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152295112	C	C	152295112	1	2	207	0	1	0	0	0	0	0	0	0	13468	1479	51	5		5	RIF1	2	152295112	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	59343	152295112	90904261	205	162335											
RIF1	55183	broad.mit.edu	37	chr2	152320326	152320326	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtagagtctaccactgaaaGccaagataaggaaaatagtc	9	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152320326	A	A	152320326	3	1	207	1	0	0	0	0	1	0	0	0	13468	971	34	4	4406	4	RIF1	2	152320326	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	25214	152320326	90879047	206	162336											
NEB	4703	broad.mit.edu	37	chr2	152496741	152496741	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttaaaggattaaaattccTgtcgataaaggcaatgctat	9	5	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152496741	A	A	152496741	1	1	207	0	1	0	0	0	0	0	0	0	10397	1595	55	5		5	NEB	2	152496741	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	176415	152496741	90702632	207	162337											
NEB	4703	broad.mit.edu	37	chr2	152506571	152506571	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgatccaatataaaatTttatgtggtgatgtatgagg	9	2	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152506571	C	C	152506571	1	2	207	0	1	0	0	0	0	0	0	0	10397	1856	64	5		5	NEB	2	152506571	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	9830	152506571	90692802	208	162338											
CACNB4	785	broad.mit.edu	37	chr2	152729043	152729043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactaaagactcactcccCagattctttgaaaatagaac	6	10	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152729043	A	A	152729043	1	1	207	0	1	0	0	0	0	0	0	0	2581	609	21	2		2	CACNB4	2	152729043	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	222472	152729043	90470330	209	162339											
TBR1	10716	broad.mit.edu	37	chr2	162276665	162276665	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaaacacccagtcttcaCgtataaaaggtgagataaca	6	10	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162276665	A	A	162276665	1	1	207	0	1	0	0	0	0	0	0	0	15769	551	19	3		3	TBR1	2	162276665	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	9547622	162276665	80922708	210	162340											
DPP4	1803	broad.mit.edu	37	chr2	162891790	162891790	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatatgctaaaaaagtgcCgtttggagaccaccacagag	11	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162891790	T	T	162891790	3	4	207	1	0	0	0	0	1	0	0	0	4769	652	23	4	1714	4	DPP4	2	162891790	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	615125	162891790	80307583	211	162341											
LASS6	253782	broad.mit.edu	37	chr2	169622131	169622131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacattatttgaaagctGggagatcgttggaccttacc	9	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169622131	T	T	169622131	3	4	207	1	0	0	0	0	1	0	0	0	8715	1357	47	2	909	2	LASS6	2	169622131	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	6730341	169622131	73577242	212	162342											
PDE11A	50940	broad.mit.edu	37	chr2	178592720	178592720	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctaacacgttgtcccaggtGaactgcttggatcacccaag	10	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178592720	T	T	178592720	1	4	207	0	1	0	0	0	0	0	0	0	11725	1305	45	3		3	PDE11A	2	178592720	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	8970589	178592720	64606653	213	162343											
PDE11A	50940	broad.mit.edu	37	chr2	178862726	178862726	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctcacagaaatatgtcacaGaccttgtggaatggacagtt	10	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178862726	A	A	178862726	1	1	207	0	1	0	0	0	0	0	0	0	11725	957	33	4		4	PDE11A	2	178862726	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	270006	178862726	64336647	214	162344											
TTN	7273	broad.mit.edu	37	chr2	179395553	179395553	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtctctgtgggtgatacGgctttcgggtgagaaggttc	15	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179395553	T	T	179395553	2	4	207	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179395553	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	532827	179395553	63803820	215	162345											
TTN	7273	broad.mit.edu	37	chr2	179485223	179485223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagacacggttgtcaaaaGgcacttcttcaccatttttg	8	9	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179485223	T	T	179485223	3	4	207	1	0	0	0	0	1	0	0	0	16861	1000	35	2	62128	2	TTN	2	179485223	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	89670	179485223	63714150	216	162346											
TTN	7273	broad.mit.edu	37	chr2	179545824	179545824	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctttagcagcgggttcagTcacctgctctttttcacgtt	8	12	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179545824	C	C	179545824	3	2	207	1	0	0	0	0	1	0	0	0	16861	1667	58	5	71107	5	TTN	2	179545824	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	60601	179545824	63653549	217	162347											
TTN	7273	broad.mit.edu	37	chr2	179565846	179565846	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtagatgaggtataataCcttcaatacgttttggtggt	11	4	1	2	rs112818474		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179565846	A	A	179565846	5	1	207	1	0	0	0	0	0	0	1	0	16861	521	18	3	73854	3	TTN	2	179565846	Splice_Site	SNP	C	TCGA-73-4668-01A-01D-1265-08	20022	179565846	63633527	218	162348											
ZNF385B	151126	broad.mit.edu	37	chr2	180347863	180347864	+	Intron	DNP	CC	GT	GT													gtgcaaacatataatccttcCcgtgaagaaaacatattaat							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	180347864	GT	GT	180347863	1	3	207	0	1	0	0	0	0	0	0	0	18003	638	22	4		4	ZNF385B	2	180347863	Intron	DNP	CC	TCGA-73-4668-01A-01D-1265-08	782017	180347863	62851510	219	162349											
ZNF385B	151126	broad.mit.edu	37	chr2	180679233	180679233	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcactatcatgtttttcttcAggaacaagcacatcatggtt	7	9	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180679233	T	T	180679233	1	4	207	0	1	0	0	0	0	0	0	0	18003	203	7	5		5	ZNF385B	2	180679233	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	331370	180679233	62520140	220	162350											
DNAJC10	54431	broad.mit.edu	37	chr2	183601114	183601114	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaaaaacagtattttgGtatgaatcactttaaactaa	6	4	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183601114	T	T	183601114	5	4	207	1	0	0	0	0	0	0	1	0	4669	1275	44	3	1022	3	DNAJC10	2	183601114	Splice_Site	SNP	G	TCGA-73-4668-01A-01D-1265-08	2921881	183601114	59598259	221	162351											
FRZB	2487	broad.mit.edu	37	chr2	183730841	183730841	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatggcctcgggagagatgCacacgcccctgtcgtacact	12	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183730841	A	A	183730841	3	1	207	1	0	0	0	0	1	0	0	0	6125	710	25	3	561	3	FRZB	2	183730841	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	129727	183730841	59468532	222	162352											
ZNF804A	91752	broad.mit.edu	37	chr2	185798286	185798286	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaaactttaaaactactaTagaccaaaatacaattaatc	2	7	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185798286	C	C	185798286	1	2	207	0	1	0	0	0	0	0	0	0	18299	1421	49	5		5	ZNF804A	2	185798286	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2067445	185798286	57401087	223	162353											
ZNF804A	91752	broad.mit.edu	37	chr2	185801123	185801123	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attcagtcccattagcagatCaaataccactagagagtgtt	7	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801123	A	A	185801123	3	1	207	1	0	0	0	0	1	0	0	0	18299	827	29	3	1014	3	ZNF804A	2	185801123	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2837	185801123	57398250	224	162354											
ZSWIM2	151112	broad.mit.edu	37	chr2	187694718	187694718	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatgcaatcgaaccctaggTtttcttgaactaaagataat	6	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187694718	A	A	187694718	1	1	207	0	1	0	0	0	0	0	0	0	18370	1740	60	5		5	ZSWIM2	2	187694718	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1893595	187694718	55504655	225	162355											
ZSWIM2	151112	broad.mit.edu	37	chr2	187701943	187701943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatatgcaggaagagggaGgctacagaacgggtactcta	14	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187701943	A	A	187701943	1	1	207	0	1	0	0	0	0	0	0	0	18370	1015	35	4		4	ZSWIM2	2	187701943	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	7225	187701943	55497430	226	162356											
MYO1B	4430	broad.mit.edu	37	chr2	192279444	192279444	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaatctctcagccattgatTtaaaaaatttccatatctga	3	8	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192279444	A	A	192279444	1	1	207	0	1	0	0	0	0	0	0	0	10163	1856	64	5		5	MYO1B	2	192279444	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	4577501	192279444	50919929	227	162357											
DNAH7	56171	broad.mit.edu	37	chr2	196892570	196892570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atagaactctgtatttattcCtatgtccacagagtttcaca	5	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196892570	T	T	196892570	1	4	207	0	1	0	0	0	0	0	0	0	4646	696	24	4		4	DNAH7	2	196892570	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4613126	196892570	46306803	228	162358											
COQ10B	80219	broad.mit.edu	37	chr2	198327273	198327273	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttaaagatattcaatgCaggaaatgtatgatgtagta	8	2	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198327273	T	T	198327273	4	4	207	1	0	0	0	0	0	1	0	0	3776	711	25	4	275	4	COQ10B	2	198327273	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1434703	198327273	44872100	229	162359											
CFLAR	8837	broad.mit.edu	37	chr2	202025625	202025625	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctcacagctcaccatccCtgtacctgcagtgcctctcc	6	18	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202025625	T	T	202025625	2	4	207	1	0	0	0	0	0	0	0	1	3322	680	24	4		4	CFLAR	2	202025625	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	3698352	202025625	41173748	230	162360											
NRP2	8828	broad.mit.edu	37	chr2	206592785	206592785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaggtaaatccatgatcCtaccttaaaggcacattgga	7	10	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206592785	A	A	206592785	1	1	207	0	1	0	0	0	0	0	0	0	10756	696	24	2		2	NRP2	2	206592785	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4567160	206592785	36606588	231	162361											
INO80D	54891	broad.mit.edu	37	chr2	206921452	206921452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgggtcttccaattcgGtttccaggtagtggagaggg	14	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206921452	T	T	206921452	3	4	207	1	0	0	0	0	1	0	0	0	7819	1261	44	3	2681	3	INO80D	2	206921452	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	328667	206921452	36277921	232	162362											
CPO	130749	broad.mit.edu	37	chr2	207814375	207814375	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagacaagagattgtggacAagtcagtgagtccatggagc	13	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207814375	T	T	207814375	4	4	207	1	0	0	0	0	0	1	0	0	3852	131	5	5	109	5	CPO	2	207814375	Nonsense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	892923	207814375	35384998	233	162363											
ABCA12	26154	broad.mit.edu	37	chr2	215855765	215855765	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcttcatgtactgtaagaaGaaaaaatgtgaggcgcttgt	10	5	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215855765	A	A	215855765	1	1	207	0	1	0	0	0	0	0	0	0	30	957	33	4		4	ABCA12	2	215855765	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	8041390	215855765	27343608	234	162364											
ABCA12	26154	broad.mit.edu	37	chr2	215866486	215866486	+	Intron	DEL	A	-	-													agaggcaaagcaaaagagacAaaaaaaaattatggtcctga							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	215866486	-	-	215866486	6	5	207	0	1	1	0	1	0	0	0	0	30	145	5	0		0	ABCA12	2	215866486	Intron	DEL	A	TCGA-73-4668-01A-01D-1265-08	10721	215866486	27332887	235	162365											
ATIC	471	broad.mit.edu	37	chr2	216197222	216197222	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctctttcaaacatgtcaGcccagcaggtaaagctctgt	8	12	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216197222	T	T	216197222	3	4	207	1	0	0	0	0	1	0	0	0	1109	971	34	3	836	3	ATIC	2	216197222	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	330736	216197222	27002151	236	162366											
ANKZF1	55139	broad.mit.edu	37	chr2	220094862	220094862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacgagaagtcttgcggtGcaggagaaaccaagtcaggc	15	8	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220094862	T	T	220094862	1	4	207	0	1	0	0	0	0	0	0	0	693	1334	46	3		3	ANKZF1	2	220094862	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3897640	220094862	23104511	237	162367											
OBSL1	23363	broad.mit.edu	37	chr2	220423055	220423055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgcctccacttccagcCcgtccttgtaccagcgcacc	7	19	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220423055	A	A	220423055	3	1	207	1	0	0	0	0	1	0	0	0	10908	623	22	2	2408	2	OBSL1	2	220423055	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	328193	220423055	22776318	238	162368											
DOCK10	55619	broad.mit.edu	37	chr2	225657747	225657747	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacaggggtgggtatcctccGagagcagggatgctgtgcaa	16	9	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225657747	A	A	225657747	3	1	207	1	0	0	0	0	1	0	0	0	4725	1059	37	4	1345	4	DOCK10	2	225657747	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	5234692	225657747	17541626	239	162369											
IRS1	3667	broad.mit.edu	37	chr2	227660836	227660836	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctctcgggcCcgaggtaaggtgctggcctt	15	12	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227660836	A	A	227660836	2	1	207	1	0	0	0	0	0	0	0	1	7910	610	22	2		2	IRS1	2	227660836	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2003089	227660836	15538537	240	162370											
COL4A4	1286	broad.mit.edu	37	chr2	227920787	227920787	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttcattccagctggccCgggaggccccacatctcccg	10	18	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	227920787	A	A	227920787	3	1	207	1	0	0	0	0	1	0	0	0	3725	652	23	1	2558	1	COL4A4	2	227920787	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	259951	227920787	15278586	241	162371											
SP110	3431	broad.mit.edu	37	chr2	231036340	231036340	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcttcctgagcaaactgcAgcacctgccagatcagcccc	8	17	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231036340	T	T	231036340	1	4	207	0	1	0	0	0	0	0	0	0	15075	203	7	5		5	SP110	2	231036340	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3115553	231036340	12163033	242	162372											
SP140	11262	broad.mit.edu	37	chr2	231135279	231135279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattaatttctgtttcctcAccaccacttgttattttcca	2	11	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231135279	T	T	231135279	1	4	207	0	1	0	0	0	0	0	0	0	15076	174	6	5		5	SP140	2	231135279	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	98939	231135279	12064094	243	162373											
PSMD1	5707	broad.mit.edu	37	chr2	231974288	231974288	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attcatcagtgaagatttgaCaaacagaacctaagtgagca	8	7	2	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231974288	G	G	231974288	1	3	207	0	1	0	0	0	0	0	0	0	12798	493	17	4		4	PSMD1	2	231974288	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	839009	231974288	11225085	244	162374											
SAG	6295	broad.mit.edu	37	chr2	234249028	234249028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagagctgggctgtgtcctGcctctgaatcatgggaaagg	15	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234249028	T	T	234249028	1	4	207	0	1	0	0	0	0	0	0	0	13919	1334	46	3		3	SAG	2	234249028	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2274740	234249028	8950345	245	162375											
AGAP1	116987	broad.mit.edu	37	chr2	236949415	236949415	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccggctgacgagccagagCgaggccatggccctgcagtc	14	15	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236949415	G	G	236949415	3	3	207	1	0	0	0	0	1	0	0	0	366	767	27	4	1879	4	AGAP1	2	236949415	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2700387	236949415	6249958	246	162376											
IQCA1	79781	broad.mit.edu	37	chr2	237396758	237396758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaataaagcccttaggCgaccttgccgtgccctctca	8	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237396758	A	A	237396758	3	1	207	1	0	0	0	0	1	0	0	0	7872	768	27	3	1999	3	IQCA1	2	237396758	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	447343	237396758	5802615	247	162377											
COL6A3	1293	broad.mit.edu	37	chr2	238281044	238281044	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcttagcgttcatgagcCaccgcccagtttgtcatgga	9	11	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238281044	A	A	238281044	1	1	207	0	1	0	0	0	0	0	0	0	3733	609	21	2		2	COL6A3	2	238281044	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	884286	238281044	4918329	248	162378											
STK25	10494	broad.mit.edu	37	chr2	242434976	242434976	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccgacgtgtccctgcagGcacgacatagcacagggcac	12	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242434976	A	A	242434976	1	1	207	0	1	0	0	0	0	0	0	0	15412	1218	42	4		4	STK25	2	242434976	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	4153932	242434976	764397	249	162379											
LHFPL4	375323	broad.mit.edu	37	chr3	9594086	9594086	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacgaagaaggcggccgccTtgaaggcgctggacgggatg	18	10	0	2	rs76516178		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9594086	C	C	9594086	3	2	207	1	0	0	0	0	1	0	0	0	8839	1609	56	5	477	5	LHFPL4	3	9594086	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08		9594086	188428344	250	162380											
CRELD1	78987	broad.mit.edu	37	chr3	9984414	9984414	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccataccatttaatcccagGcaagaccattccccaacggc	6	16	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9984414	C	C	9984414	1	2	207	0	1	0	0	0	0	0	0	0	3898	1218	42	4		4	CRELD1	3	9984414	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	390328	9984414	188038016	251	162381											
SYN2	6854	broad.mit.edu	37	chr3	12188315	12188315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccgaccactgaggggaCccagctcctctgctggctct	10	18	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12188315	A	A	12188315	1	1	207	0	1	0	0	0	0	0	0	0	15560	522	18	3		3	SYN2	3	12188315	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2203901	12188315	185834115	252	162382											
GRIP2	80852	broad.mit.edu	37	chr3	14538198	14538198	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacagacatggtccctgcCcattggggctgggtccaaca	13	12	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14538198	T	T	14538198	1	4	207	0	1	0	0	0	0	0	0	0	6854	638	22	4		4	GRIP2	3	14538198	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2349883	14538198	183484232	253	162383											
RPL15	6138	broad.mit.edu	37	chr3	23960910	23960910	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtggccttggaaagggccAcaagttccaccacactattg	10	13	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23960910	G	G	23960910	3	3	207	1	0	0	0	0	1	0	0	0	13673	159	6	5	543	5	RPL15	3	23960910	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	9422712	23960910	174061520	254	162384											
CNOT10	25904	broad.mit.edu	37	chr3	32801156	32801156	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcttttgactcctccaGtggaatatatatttgtaagg	8	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32801156	A	A	32801156	1	1	207	0	1	0	0	0	0	0	0	0	3650	1044	36	4		4	CNOT10	3	32801156	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	8840246	32801156	165221274	255	162385											
TTC21A	199223	broad.mit.edu	37	chr3	39176802	39176802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattgttccagagaagcaGgaaactgataaagacccagt	10	8	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39176802	T	T	39176802	1	4	207	0	1	0	0	0	0	0	0	0	16813	1015	35	2		2	TTC21A	3	39176802	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6375646	39176802	158845628	256	162386											
DOCK3	1795	broad.mit.edu	37	chr3	51264527	51264527	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcattgtgactgctgatttCatataccatctatgtaactg	7	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51264527	T	T	51264527	1	4	207	0	1	0	0	0	0	0	0	0	4728	841	29	4		4	DOCK3	3	51264527	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	12087725	51264527	146757903	257	162387											
DOCK3	1795	broad.mit.edu	37	chr3	51284221	51284221	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aactgattcgacaggaccacAttcaagaagctatgcgggta	10	9	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51284221	T	T	51284221	3	4	207	1	0	0	0	0	1	0	0	0	4728	217	8	5	2253	5	DOCK3	3	51284221	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	19694	51284221	146738209	258	162388											
CACNA2D3	55799	broad.mit.edu	37	chr3	55107852	55107852	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaggcccagaagatcagaaGgcgcccagaatcttgtcatg	11	10	3	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55107852	A	A	55107852	3	1	207	1	0	0	0	0	1	0	0	0	2576	1000	35	4	3295	4	CACNA2D3	3	55107852	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3823631	55107852	142914578	259	162389											
SLMAP	7871	broad.mit.edu	37	chr3	57857303	57857303	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagttttcctacctttgCtgttggttttcaaagacagc	7	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57857303	T	T	57857303	1	4	207	0	1	0	0	0	0	0	0	0	14863	812	28	4		4	SLMAP	3	57857303	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2749451	57857303	140165127	260	162390											
PTPRG	5793	broad.mit.edu	37	chr3	61906826	61906827	+	Intron	INS	-	TTCT	TTCT													ttccttccttccttccttccINSttccttccttcttacctatc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTCT	61906827	TTCT	TTCT	61906826	6	5	207	0	1	1	1	0	0	0	0	0	12910	696	24	0		0	PTPRG	3	61906826	Intron	INS	-	TCGA-73-4668-01A-01D-1265-08	4049523	61906826	136115604	261	162391											
C3orf26	84319	broad.mit.edu	37	chr3	99891162	99891162	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctttcatcttggaacaggtCcaggcgcaggtaaagttgct	11	9	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99891162	T	T	99891162	2	4	207	1	0	0	0	0	0	0	0	1	2240	842	30	4		4	C3orf26	3	99891162	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	37984336	99891162	98131268	262	162392											
ZPLD1	131368	broad.mit.edu	37	chr3	102181147	102181147	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaacctacaaccagcagtTaattatccccagtataggat	5	11	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102181147	A	A	102181147	4	1	207	1	0	0	0	0	0	1	0	0	18350	1764	61	5	675	5	ZPLD1	3	102181147	Nonsense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	2289985	102181147	95841283	263	162393											
DPPA2	151871	broad.mit.edu	37	chr3	109023603	109023603	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcactcttgaatttgctcTtgtattctgctcacaaatca	5	10	6	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109023603	A	A	109023603	1	1	207	0	1	0	0	0	0	0	0	0	4774	1624	56	5		5	DPPA2	3	109023603	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	6842456	109023603	88998827	264	162394											
SLC9A10	285335	broad.mit.edu	37	chr3	111887583	111887583	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtggttgtgggtatgaGtgagtgtttatggagtggtg	21	0	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111887583	A	A	111887583	1	1	207	0	1	0	0	0	0	0	0	0	14824	1044	36	4		4	SLC9A10	3	111887583	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2863980	111887583	86134847	265	162395											
ATG3	64422	broad.mit.edu	37	chr3	112251469	112251469	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtatatattgatgaataTggtcaatggtcacatctatg	8	5	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112251469	C	C	112251469	1	2	207	0	1	0	0	0	0	0	0	0	1099	1479	51	5		5	ATG3	3	112251469	3'UTR	SNP	T	TCGA-73-4668-01A-01D-1265-08	363886	112251469	85770961	266	162396											
ARHGAP31	57514	broad.mit.edu	37	chr3	119133764	119133764	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggcacccaggagagagatTactggatgggatgagaaagc	15	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119133764	A	A	119133764	2	1	207	1	0	0	0	0	0	0	0	1	882	1742	61	5		5	ARHGAP31	3	119133764	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	6882295	119133764	78888666	267	162397											
POLQ	10721	broad.mit.edu	37	chr3	121208732	121208732	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtgaaaaagtctgaaCaactttcttatcacttgttt	5	7	4	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121208732	A	A	121208732	3	1	207	1	0	0	0	0	1	0	0	0	12303	478	17	3	4786	3	POLQ	3	121208732	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2074968	121208732	76813698	268	162398											
POLQ	10721	broad.mit.edu	37	chr3	121248716	121248716	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtttaaaagcactcattttCctttctggggaagctttttc	7	8	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121248716	T	T	121248716	1	4	207	0	1	0	0	0	0	0	0	0	12303	870	30	4		4	POLQ	3	121248716	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	39984	121248716	76773714	269	162399											
ARGFX	503582	broad.mit.edu	37	chr3	121304000	121304000	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccctctacccctgccCcacaataatatttcattaat	1	18	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121304000	A	A	121304000	1	1	207	0	1	0	0	0	0	0	0	0	861	638	22	2		2	ARGFX	3	121304000	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	55284	121304000	76718430	270	162400											
EAF2	55840	broad.mit.edu	37	chr3	121554259	121554259	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagtgaggaccatccgggGatagagggggagcctcccgg	19	9	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121554259	T	T	121554259	1	4	207	0	1	0	0	0	0	0	0	0	4916	1189	41	3		3	EAF2	3	121554259	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	250259	121554259	76468171	271	162401											
PDIA5	10954	broad.mit.edu	37	chr3	122821599	122821599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttctcctcatttgacaggGatggtgcatttcatactgaa	8	8	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122821599	T	T	122821599	3	4	207	1	0	0	0	0	1	0	0	0	11765	1188	41	3	361	3	PDIA5	3	122821599	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1267340	122821599	75200831	272	162402											
ADCY5	111	broad.mit.edu	37	chr3	123167195	123167195	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcggctggccaggcgctgCtgctgctgcggggtcaccgc	17	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123167195	G	G	123167195	3	3	207	1	0	0	0	0	1	0	0	0	297	796	28	4	3671	4	ADCY5	3	123167195	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	345596	123167195	74855235	273	162403											
ZNF148	7707	broad.mit.edu	37	chr3	124952110	124952110	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtacccacattcagcgcaTattccctgctgttgttactt	7	12	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124952110	A	A	124952110	3	1	207	1	0	0	0	0	1	0	0	0	17860	1406	49	5	928	5	ZNF148	3	124952110	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	1784915	124952110	73070320	274	162404											
NEK11	79858	broad.mit.edu	37	chr3	130884364	130884364	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgttgatgtactccatGtaagtaccctcttattttaa	7	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130884364	T	T	130884364	5	4	207	1	0	0	0	0	0	0	1	0	10418	1391	48	3	1215	3	NEK11	3	130884364	Splice_Site	SNP	G	TCGA-73-4668-01A-01D-1265-08	5932254	130884364	67138066	275	162405											
EPHB1	2047	broad.mit.edu	37	chr3	134920490	134920490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttggcctctcccgctacCtccaggatgacacctcagat	7	16	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134920490	A	A	134920490	3	1	207	1	0	0	0	0	1	0	0	0	5216	681	24	2	2351	2	EPHB1	3	134920490	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4036126	134920490	63101940	276	162406											
CLDN18	51208	broad.mit.edu	37	chr3	137729351	137729351	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagggaagggggcgtttgCgttaagccccactcccacct	13	13	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137729351	G	G	137729351	1	3	207	0	1	0	0	0	0	0	0	0	3510	783	27	4		4	CLDN18	3	137729351	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2808861	137729351	60293079	277	162407											
PIK3CB	5291	broad.mit.edu	37	chr3	138478125	138478125	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atcagatgctatctgtgaatCcaccgcccagatgtcaagga	9	11	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138478125	G	G	138478125	3	3	207	1	0	0	0	0	1	0	0	0	12009	855	30	4	3237	4	PIK3CB	3	138478125	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	748774	138478125	59544305	278	162408											
TRIM42	287015	broad.mit.edu	37	chr3	140397351	140397351	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgctactactatgagagcCgctgctgccgcaataccatc	8	14	0	1	rs139146415		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140397351	T	T	140397351	3	4	207	1	0	0	0	0	1	0	0	0	16641	652	23	4	282	4	TRIM42	3	140397351	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1919226	140397351	57625079	279	162409											
GK5	256356	broad.mit.edu	37	chr3	141904809	141904809	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcacaccaaatatctcttCatccactgatccaaaattgt	4	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141904809	A	A	141904809	4	1	207	1	0	0	0	0	0	1	0	0	6486	835	29	3	843	3	GK5	3	141904809	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1507458	141904809	56117621	280	162410											
SLC9A9	285195	broad.mit.edu	37	chr3	143237105	143237105	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgaagctcaggggctgCagcccggttccaggcccagg	17	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143237105	T	T	143237105	1	4	207	0	1	0	0	0	0	0	0	0	14835	725	25	4		4	SLC9A9	3	143237105	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1332296	143237105	54785325	281	162411											
P2RY12	64805	broad.mit.edu	37	chr3	151056021	151056021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgtataacatacaataaCaattaagaaattaatccaga	5	5	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151056021	A	A	151056021	3	1	207	1	0	0	0	0	1	0	0	0	11443	478	17	3	419	3	P2RY12	3	151056021	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	7818916	151056021	46966409	282	162412											
P2RY1	5028	broad.mit.edu	37	chr3	152553525	152553525	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgccgctgccctctcGccgcctcctacccctcggag	10	22	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152553525	T	T	152553525	1	4	207	0	1	0	0	0	0	0	0	0	11440	1102	38	3		3	P2RY1	3	152553525	5'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	1497504	152553525	45468905	283	162413											
MLF1	4291	broad.mit.edu	37	chr3	158317887	158317887	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatatccatgaccgagctCatgtcattaaaaagtcaaag	6	9	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158317887	T	T	158317887	3	4	207	1	0	0	0	0	1	0	0	0	9707	826	29	4	511	4	MLF1	3	158317887	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	5764362	158317887	39704543	284	162414											
SI	6476	broad.mit.edu	37	chr3	164724627	164724627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtaggtttcatctgtgaCcatccatagagattgtgaac	10	7	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164724627	A	A	164724627	3	1	207	1	0	0	0	0	1	0	0	0	14410	508	18	3	1148	3	SI	3	164724627	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	6406740	164724627	33297803	285	162415											
SI	6476	broad.mit.edu	37	chr3	164755795	164755795	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atatcaacccgttgtttcctCcatggcctttttgcacccta	5	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164755795	A	A	164755795	3	1	207	1	0	0	0	0	1	0	0	0	14410	856	30	3	3276	3	SI	3	164755795	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	31168	164755795	33266635	286	162416											
SI	6476	broad.mit.edu	37	chr3	164783080	164783080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggtctcgagtaaaaattGgccatgttttccaggataaa	10	6	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164783080	T	T	164783080	3	4	207	1	0	0	0	0	1	0	0	0	14410	1348	47	2	4875	2	SI	3	164783080	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	27285	164783080	33239350	287	162417											
SLITRK3	22865	broad.mit.edu	37	chr3	164907248	164907248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaggaagaggctctttaaGttgggcaagttgataaaggc	13	4	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164907248	T	T	164907248	3	4	207	1	0	0	0	0	1	0	0	0	14858	1020	36	3	1566	3	SLITRK3	3	164907248	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	124168	164907248	33115182	288	162418											
WDR49	151790	broad.mit.edu	37	chr3	167319852	167319852	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagaaattcagatcccagAgttgatttgggtaggaatcg	12	6	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167319852	G	G	167319852	1	3	207	0	1	0	0	0	0	0	0	0	17429	319	11	5		5	WDR49	3	167319852	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2412604	167319852	30702578	289	162419											
CCDC39	339829	broad.mit.edu	37	chr3	180381775	180381775	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatccttcagctttgacaaCtgtaaataataaatactatg	4	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180381775	A	A	180381775	5	1	207	1	0	0	0	0	0	0	1	0	2838	579	20	3	2811	3	CCDC39	3	180381775	Splice_Site	SNP	C	TCGA-73-4668-01A-01D-1265-08	13061923	180381775	17640655	290	162420											
HTR3E	285242	broad.mit.edu	37	chr3	183823316	183823316	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtttcagggtctcccaatGttaccctctctcctggcttc	7	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183823316	A	A	183823316	1	1	207	0	1	0	0	0	0	0	0	0	7518	1392	48	4		4	HTR3E	3	183823316	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3441541	183823316	14199114	291	162421											
KNG1	3827	broad.mit.edu	37	chr3	186449307	186449308	+	Intron	DNP	AG	GA	GA													ctaaaaaatgtttttaactgAgcacttatatgctttttaaa							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	186449308	GA	GA	186449307	1	3	207	0	1	0	0	0	0	0	0	0	8498	319	11	5		5	KNG1	3	186449307	Intron	DNP	AG	TCGA-73-4668-01A-01D-1265-08	2625991	186449307	11573123	292	162422											
TPRG1	285386	broad.mit.edu	37	chr3	188956642	188956642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagcggattcctctgagCgctgtctatcgcatctgcct	10	14	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	188956642	A	A	188956642	3	1	207	1	0	0	0	0	1	0	0	0	16542	767	27	3	433	3	TPRG1	3	188956642	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2507335	188956642	9065788	293	162423											
IL1RAP	3556	broad.mit.edu	37	chr3	190345227	190345227	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacatcactattgatgtcacCattaacgaaaggtatcatgg	8	8	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190345227	T	T	190345227	2	4	207	1	0	0	0	0	0	0	0	1	7730	581	21	4		4	IL1RAP	3	190345227	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	1388585	190345227	7677203	294	162424											
DGKQ	1609	broad.mit.edu	37	chr4	958925	958925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacctccctctggccacccCctggggtgtgtgaagagccg	13	16	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	958925	A	A	958925	1	1	207	0	1	0	0	0	0	0	0	0	4513	638	22	2		2	DGKQ	4	958925	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08		958925	190195351	295	162425											
CRMP1	1400	broad.mit.edu	37	chr4	5844728	5844728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggacacgggaagaggccGggtcctggctgggctactcc	17	11	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5844728	T	T	5844728	1	4	207	0	1	0	0	0	0	0	0	0	3922	1131	39	1		1	CRMP1	4	5844728	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4885803	5844728	185309548	296	162426											
SORCS2	57537	broad.mit.edu	37	chr4	7728561	7728561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttcggacacgggcgacGtgcgtgtgacggtgcaggcc	18	10	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7728561	T	T	7728561	3	4	207	1	0	0	0	0	1	0	0	0	15045	1145	40	3	2882	3	SORCS2	4	7728561	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1883833	7728561	183425715	297	162427											
SLC2A9	56606	broad.mit.edu	37	chr4	10022985	10022985	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggccctggaggcccggcGtggctggtgtcatctgtgag	17	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10022985	A	A	10022985	2	1	207	1	0	0	0	0	0	0	0	1	14666	1136	40	4		4	SLC2A9	4	10022985	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	2294424	10022985	181131291	298	162428											
LDB2	9079	broad.mit.edu	37	chr4	16597298	16597298	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctcagagtaggaaaagcCgggcatgtgacagagcctgt	14	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16597298	A	A	16597298	1	1	207	0	1	0	0	0	0	0	0	0	8768	667	23	1		1	LDB2	4	16597298	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	6574313	16597298	174556978	299	162429											
PDS5A	23244	broad.mit.edu	37	chr4	39881491	39881491	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataaatcagtaaccactgtAgtagtaactatatcctaatc	4	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39881491	G	G	39881491	1	3	207	0	1	0	0	0	0	0	0	0	11785	435	15	5		5	PDS5A	4	39881491	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	23284193	39881491	151272785	300	162430											
KCTD8	386617	broad.mit.edu	37	chr4	44177089	44177089	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgttaggttggtgagcTgttgcctgctgggcactgga	16	6	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44177089	A	A	44177089	2	1	207	1	0	0	0	0	0	0	0	1	8185	1567	55	5		5	KCTD8	4	44177089	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	4295598	44177089	146977187	301	162431											
NFXL1	152518	broad.mit.edu	37	chr4	47850138	47850138	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atttcaaatttaacaacttaTctaaatccaatctgagttac	2	8	3	1	rs138338542	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47850138	A	A	47850138	1	1	207	0	1	0	0	0	0	0	0	0	10483	1450	50	5		5	NFXL1	4	47850138	3'UTR	SNP	T	TCGA-73-4668-01A-01D-1265-08	3673049	47850138	143304138	302	162432											
DCUN1D4	23142	broad.mit.edu	37	chr4	52740465	52740465	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggtcttgcagttcttcagaCtgctttaataaagtgatgcc	9	9	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52740465	G	G	52740465	3	3	207	1	0	0	0	0	1	0	0	0	4349	564	20	4	179	4	DCUN1D4	4	52740465	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4890327	52740465	138413811	303	162433											
SPATA18	132671	broad.mit.edu	37	chr4	52938360	52938360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatcttctcatttaggctcTttttgctgagttaagggatc	9	7	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52938360	A	A	52938360	1	1	207	0	1	0	0	0	0	0	0	0	15119	1624	56	5		5	SPATA18	4	52938360	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	197895	52938360	138215916	304	162434											
SPATA18	132671	broad.mit.edu	37	chr4	52948509	52948509	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcccctagatatgctccAtaattgcttaacttctcttt	3	11	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52948509	G	G	52948509	1	3	207	0	1	0	0	0	0	0	0	0	15119	232	8	5		5	SPATA18	4	52948509	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	10149	52948509	138205767	305	162435											
PDGFRA	5156	broad.mit.edu	37	chr4	55161585	55161585	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagggcctcggggagcgttCtaaatatgaatgaatgggat	14	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55161585	A	A	55161585	1	1	207	0	1	0	0	0	0	0	0	0	11755	928	32	3		3	PDGFRA	4	55161585	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	2213076	55161585	135992691	306	162436											
KIT	3815	broad.mit.edu	37	chr4	55598004	55598004	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgacctttatggttgTaattgctaagaaaaatcctc	6	8	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55598004	G	G	55598004	1	3	207	0	1	0	0	0	0	0	0	0	8400	1653	57	5		5	KIT	4	55598004	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	436419	55598004	135556272	307	162437											
KDR	3791	broad.mit.edu	37	chr4	55979578	55979578	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatctatagttaaggtgCtcaaaaatttcttcatctca	4	10	5	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55979578	A	A	55979578	3	1	207	1	0	0	0	0	1	0	0	0	8209	797	28	3	3297	3	KDR	4	55979578	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	381574	55979578	135174698	308	162438											
POLR2B	5431	broad.mit.edu	37	chr4	57857037	57857037	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctacaggctgaagctcaGcatgctagtggagaagttga	13	8	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57857037	A	A	57857037	2	1	207	1	0	0	0	0	0	0	0	1	12310	962	34	4		4	POLR2B	4	57857037	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1877459	57857037	133297239	309	162439											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68691762	68691762	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagccaaaattccccaagtaGatgaggataacccctttcac	6	13	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68691762	T	T	68691762	1	4	207	0	1	0	0	0	0	0	0	0	16364	957	33	3		3	TMPRSS11D	4	68691762	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	10834725	68691762	122462514	310	162440											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69098031	69098031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catatttcaagtatttttaaTagaaaaataatgagaaaata	4	2	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69098031	C	C	69098031	1	2	207	0	1	0	0	0	0	0	0	0	16363	1421	49	5		5	TMPRSS11B	4	69098031	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	406269	69098031	122056245	311	162441											
UGT2B4	7363	broad.mit.edu	37	chr4	70346380	70346380	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttccccttctttcctgttCtaacaaacttccagacacaa	2	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346380	A	A	70346380	3	1	207	1	0	0	0	0	1	0	0	0	17087	913	32	3	31	3	UGT2B4	4	70346380	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1248349	70346380	120807896	312	162442											
C4orf35	85438	broad.mit.edu	37	chr4	71201991	71201991	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgcaatagtctagccaGctagccttaacatctaagaa	7	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71201991	T	T	71201991	1	4	207	0	1	0	0	0	0	0	0	0	2288	986	34	3		3	C4orf35	4	71201991	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	855611	71201991	119952285	313	162443											
DCK	1633	broad.mit.edu	37	chr4	71889207	71889207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaatgtttcatgttcctGttctcttttttatttctttg	7	6	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71889207	T	T	71889207	1	4	207	0	1	0	0	0	0	0	0	0	4323	1392	48	3		3	DCK	4	71889207	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	687216	71889207	119265069	314	162444											
ADAMTS3	9508	broad.mit.edu	37	chr4	73205255	73205255	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttggacgtgctctttgcCatggaaacggaccacagagt	12	9	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73205255	A	A	73205255	3	1	207	1	0	0	0	0	1	0	0	0	267	594	21	2	2872	2	ADAMTS3	4	73205255	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1316048	73205255	117949021	315	162445											
ADAMTS3	9508	broad.mit.edu	37	chr4	73280705	73280705	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcctagagaaagcacaaaAtgtgttaatttaaaaaagaa	7	5	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73280705	G	G	73280705	1	3	207	0	1	0	0	0	0	0	0	0	267	116	4	5		5	ADAMTS3	4	73280705	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	75450	73280705	117873571	316	162446											
ANKRD17	26057	broad.mit.edu	37	chr4	74008305	74008305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatatgttgtaacaatgaCcaagagagaaatactaattc	7	5	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74008305	A	A	74008305	1	1	207	0	1	0	0	0	0	0	0	0	646	522	18	3		3	ANKRD17	4	74008305	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	727600	74008305	117145971	317	162447											
ANKRD17	26057	broad.mit.edu	37	chr4	74021310	74021310	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcattattaccaaatgatgTtactatgtagtaaaactgaa	5	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74021310	A	A	74021310	1	1	207	0	1	0	0	0	0	0	0	0	646	1740	60	5		5	ANKRD17	4	74021310	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	13005	74021310	117132966	318	162448											
EREG	2069	broad.mit.edu	37	chr4	75246782	75246782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcaataacaaagtgtaGctctgacatgaatggctatt	9	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75246782	T	T	75246782	3	4	207	1	0	0	0	0	1	0	0	0	5262	971	34	3	216	3	EREG	4	75246782	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1225472	75246782	115907494	319	162449											
PPEF2	5470	broad.mit.edu	37	chr4	76797493	76797493	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccggcttcagagtctgCttctgaggctgagcgggagg	15	11	4	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76797493	T	T	76797493	3	4	207	1	0	0	0	0	1	0	0	0	12404	797	28	4	1022	4	PPEF2	4	76797493	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1550711	76797493	114356783	320	162450											
ANKRD56	345079	broad.mit.edu	37	chr4	77816557	77816557	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagcttttctattcccCctgaattctctcactgagca	5	14	4	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77816557	A	A	77816557	1	1	207	0	1	0	0	0	0	0	0	0	682	638	22	2		2	ANKRD56	4	77816557	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	1019064	77816557	113337719	321	162451											
NKX6-1	4825	broad.mit.edu	37	chr4	85416934	85416934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagggcgaagatctgctgtCcggaaaaagtgggtctcgtg	15	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85416934	A	A	85416934	3	1	207	1	0	0	0	0	1	0	0	0	10552	855	30	3	377	3	NKX6-1	4	85416934	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	7600377	85416934	105737342	322	162452											
MMRN1	22915	broad.mit.edu	37	chr4	90856970	90856970	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcgtgatgatgccttAgaaagacgtatcaatgaata	11	6	1	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90856970	T	T	90856970	3	4	207	1	0	0	0	0	1	0	0	0	9764	417	15	5	2161	5	MMRN1	4	90856970	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	5440036	90856970	100297306	323	162453											
GRID2	2895	broad.mit.edu	37	chr4	94137928	94137928	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaggaacttgtaagaaggTcaattggaaggttaacgatt	11	4	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94137928	C	C	94137928	3	2	207	1	0	0	0	0	1	0	0	0	6838	1667	58	5	851	5	GRID2	4	94137928	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	3280958	94137928	97016348	324	162454											
PDHA2	5161	broad.mit.edu	37	chr4	96761804	96761804	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatggcatcgtcggtgcacAgggccccctgggcgctggca	15	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96761804	G	G	96761804	3	3	207	1	0	0	0	0	1	0	0	0	11759	188	7	5	505	5	PDHA2	4	96761804	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	2623876	96761804	94392472	325	162455											
C4orf37	285555	broad.mit.edu	37	chr4	98947242	98947242	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactccagacatgatggagaTgtataggaaagctcatgctg	11	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98947242	C	C	98947242	1	2	207	0	1	0	0	0	0	0	0	0	2290	1479	51	5		5	C4orf37	4	98947242	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2185438	98947242	92207034	326	162456											
RAP1GDS1	5910	broad.mit.edu	37	chr4	99339942	99339942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaaacctggccattccaGgtaagacttaagaatagaag	9	8	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99339942	T	T	99339942	3	4	207	1	0	0	0	0	1	0	0	0	13147	1014	35	2	1215	2	RAP1GDS1	4	99339942	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	392700	99339942	91814334	327	162457											
ADH6	130	broad.mit.edu	37	chr4	100126133	100126133	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgattttatcaagattcAgagtatgagtaattagtgga	9	3	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100126133	T	T	100126133	3	4	207	1	0	0	0	0	1	0	0	0	312	188	7	5	87	5	ADH6	4	100126133	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	786191	100126133	91028143	328	162458											
TACR3	6870	broad.mit.edu	37	chr4	104510895	104510895	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgaaacttgaagtggcggAggcagatttggaattcctgc	13	6	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104510895	T	T	104510895	3	4	207	1	0	0	0	0	1	0	0	0	15626	304	11	5	59	5	TACR3	4	104510895	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	4384762	104510895	86643381	329	162459											
COL25A1	84570	broad.mit.edu	37	chr4	109969263	109969263	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattttggtgttttaacaaAgttttaacatacacaatcct	4	6	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109969263	T	T	109969263	1	4	207	0	1	0	0	0	0	0	0	0	3716	87	3	5		5	COL25A1	4	109969263	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	5458368	109969263	81185013	330	162460											
ENPEP	2028	broad.mit.edu	37	chr4	111441350	111441350	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttgttaattaattaatctCcattttgttttcaatcttag	3	5	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111441350	A	A	111441350	1	1	207	0	1	0	0	0	0	0	0	0	5170	870	30	3		3	ENPEP	4	111441350	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1472087	111441350	79712926	331	162461											
C4orf21	55345	broad.mit.edu	37	chr4	113541292	113541292	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggctccagcaactttaaCctcttcaactgtgattaagt	6	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113541292	A	A	113541292	3	1	207	1	0	0	0	0	1	0	0	0	2277	507	18	3	6193	3	C4orf21	4	113541292	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2099942	113541292	77612984	332	162462											
ANK2	287	broad.mit.edu	37	chr4	114257162	114257162	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagtggtgccccaggtgcaGgccgtcttcccagagggggc	16	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114257162	C	C	114257162	3	2	207	1	0	0	0	0	1	0	0	0	621	991	35	4	3723	4	ANK2	4	114257162	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	715870	114257162	76897114	333	162463											
CAMK2D	817	broad.mit.edu	37	chr4	114458639	114458639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagagactgaagtgagaaCctattttaagcgactattca	8	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114458639	A	A	114458639	1	1	207	0	1	0	0	0	0	0	0	0	2627	522	18	3		3	CAMK2D	4	114458639	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	201477	114458639	76695637	334	162464											
NDST4	64579	broad.mit.edu	37	chr4	115769577	115769577	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttttgctcaaaaagtaaTattaaaataatcaactattt	2	4	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115769577	C	C	115769577	1	2	207	0	1	0	0	0	0	0	0	0	10353	1421	49	5		5	NDST4	4	115769577	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1310938	115769577	75384699	335	162465											
TRPC3	7222	broad.mit.edu	37	chr4	122824231	122824231	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatcctgtgtcacaaaaaTagaaaaaaaaactaatttta	4	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122824231	C	C	122824231	1	2	207	0	1	0	0	0	0	0	0	0	16704	1421	49	5		5	TRPC3	4	122824231	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	7054654	122824231	68330045	336	162466											
PCDH18	54510	broad.mit.edu	37	chr4	138452894	138452894	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatggaaaagctgcagatGctctgtgggtagagtgatca	13	5	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138452894	A	A	138452894	3	1	207	1	0	0	0	0	1	0	0	0	11607	1319	46	4	3074	4	PCDH18	4	138452894	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	15628663	138452894	52701382	337	162467											
TBC1D9	23158	broad.mit.edu	37	chr4	141555141	141555141	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccggaagttaatcaaagagtCtccattttcatctaataact	5	9	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141555141	A	A	141555141	3	1	207	1	0	0	0	0	1	0	0	0	15749	913	32	3	1117	3	TBC1D9	4	141555141	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3102247	141555141	49599135	338	162468											
INPP4B	8821	broad.mit.edu	37	chr4	143007287	143007287	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaataagatttgacatgaGagtgcttaccgttgcagcca	11	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143007287	C	C	143007287	1	2	207	0	1	0	0	0	0	0	0	0	7823	957	33	4		4	INPP4B	4	143007287	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1452146	143007287	48146989	339	162469											
SH3D19	152503	broad.mit.edu	37	chr4	152043243	152043243	+	Nonstop_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacacagacaagcttctcctCtagctgatctgtagaaactg	7	11	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152043243	A	A	152043243	4	1	207	1	0	0	0	0	0	0	0	0	14362	924	32	3	3	3	SH3D19	4	152043243	Nonstop_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	9035956	152043243	39111033	340	162470											
DCHS2	54798	broad.mit.edu	37	chr4	155241433	155241433	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactcacagtcaacaacaatGtattgtacacttaaaacttt	3	9	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155241433	A	A	155241433	1	1	207	0	1	0	0	0	0	0	0	0	4321	1392	48	4		4	DCHS2	4	155241433	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3198190	155241433	35912843	341	162471											
FGB	2244	broad.mit.edu	37	chr4	155489050	155489050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagagaacaacaacaacaaCaaaaatgctaagtggatttt	6	6	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155489050	A	A	155489050	1	1	207	0	1	0	0	0	0	0	0	0	5888	493	17	3		3	FGB	4	155489050	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	247617	155489050	35665226	342	162472											
GUCY1A3	2982	broad.mit.edu	37	chr4	156631634	156631634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgaaaataggaataatGgcacagctttaccaaggtgg	11	5	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156631634	T	T	156631634	1	4	207	0	1	0	0	0	0	0	0	0	6959	1363	47	2		2	GUCY1A3	4	156631634	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1142584	156631634	34522642	343	162473											
GUCY1B3	2983	broad.mit.edu	37	chr4	156698768	156698768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacaatcttgcgtgtcctgGgctctaatgtcagagaattt	9	8	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156698768	T	T	156698768	3	4	207	1	0	0	0	0	1	0	0	0	6960	1232	43	2	285	2	GUCY1B3	4	156698768	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	67134	156698768	34455508	344	162474											
GUCY1B3	2983	broad.mit.edu	37	chr4	156715006	156715006	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttccccctttgatatccAggttattcagcaaagaaatg	6	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156715006	T	T	156715006	5	4	207	1	0	0	0	0	0	0	1	0	6960	202	7	5	516	5	GUCY1B3	4	156715006	Splice_Site	SNP	A	TCGA-73-4668-01A-01D-1265-08	16238	156715006	34439270	345	162475											
GRIA2	2891	broad.mit.edu	37	chr4	158254165	158254165	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tactcaaaataatcgttaacGtgacttaatatggccattaa	5	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158254165	C	C	158254165	1	2	207	0	1	0	0	0	0	0	0	0	6834	1160	40	4		4	GRIA2	4	158254165	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1539159	158254165	32900111	346	162476											
GRIA2	2891	broad.mit.edu	37	chr4	158281336	158281336	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgctaaatgttgttataGtatcccacctaccctgatgt	6	9	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158281336	T	T	158281336	1	4	207	0	1	0	0	0	0	0	0	0	6834	1044	36	3		3	GRIA2	4	158281336	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	27171	158281336	32872940	347	162477											
TMEM144	55314	broad.mit.edu	37	chr4	159158782	159158782	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgatagtatatatgcaggGgcaagccaatatggtgagaa	12	4	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159158782	T	T	159158782	2	4	207	1	0	0	0	0	0	0	0	1	16181	1219	43	2		2	TMEM144	4	159158782	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	877446	159158782	31995494	348	162478											
RXFP1	59350	broad.mit.edu	37	chr4	159538291	159538291	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttttcagagtcctgaTgaataacgtcctcacccgtt	6	12	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159538291	C	C	159538291	3	2	207	1	0	0	0	0	1	0	0	0	13870	1464	51	5	723	5	RXFP1	4	159538291	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	379509	159538291	31615985	349	162479											
FSTL5	56884	broad.mit.edu	37	chr4	162307510	162307510	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgactgaggaacgcacttatAgtccttcaagttaattgtct	8	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162307510	T	T	162307510	3	4	207	1	0	0	0	0	1	0	0	0	6140	420	15	5	614	5	FSTL5	4	162307510	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	2769219	162307510	28846766	350	162480											
NPY5R	4889	broad.mit.edu	37	chr4	164272217	164272217	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actcttcatccatccaaaaaGagtgggcctcaggtgaaact	8	11	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164272217	T	T	164272217	3	4	207	1	0	0	0	0	1	0	0	0	10705	933	33	3	794	3	NPY5R	4	164272217	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1964707	164272217	26882059	351	162481											
MARCH1	55016	broad.mit.edu	37	chr4	165109675	165109675	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgttcaagaccggctGcgtggagatcaccgccaaca	12	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165109675	T	T	165109675	1	4	207	0	1	0	0	0	0	0	0	0	9390	1334	46	3		3	MARCH1	4	165109675	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	837458	165109675	26044601	352	162482											
MARCH1	55016	broad.mit.edu	37	chr4	165109812	165109812	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaacacggtctttgacGccaagtggctcatcggccgc	11	14	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165109812	T	T	165109812	1	4	207	0	1	0	0	0	0	0	0	0	9390	1102	38	3		3	MARCH1	4	165109812	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	137	165109812	26044464	353	162483											
TLL1	7092	broad.mit.edu	37	chr4	166976147	166976147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaacaaatcagaagtatGgcactgagaagacatctatc	7	7	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166976147	T	T	166976147	1	4	207	0	1	0	0	0	0	0	0	0	16068	1363	47	2		2	TLL1	4	166976147	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1866335	166976147	24178129	354	162484											
DDX60	55601	broad.mit.edu	37	chr4	169190183	169190183	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatagcaaatgaaagtTaagacatggaatcttgaaat	7	3	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169190183	C	C	169190183	1	2	207	0	1	0	0	0	0	0	0	0	4411	1769	61	5		5	DDX60	4	169190183	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2214036	169190183	21964093	355	162485											
GPM6A	2823	broad.mit.edu	37	chr4	176561919	176561919	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacctcagtagattcgcaCatcctcaagaaattctcaga	5	13	4	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176561919	A	A	176561919	3	1	207	1	0	0	0	0	1	0	0	0	6680	478	17	3	245	3	GPM6A	4	176561919	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	7371736	176561919	14592357	356	162486											
SPATA4	132851	broad.mit.edu	37	chr4	177116477	177116477	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgcccaccgggggggcctagGactggcttactcaagcacct	13	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177116477	C	C	177116477	1	2	207	0	1	0	0	0	0	0	0	0	15126	1189	41	4		4	SPATA4	4	177116477	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	554558	177116477	14037799	357	162487											
ASB5	140458	broad.mit.edu	37	chr4	177142508	177142508	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacctcaccccaggcttcCcttgtggtgtcattcattga	7	15	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177142508	T	T	177142508	1	4	207	0	1	0	0	0	0	0	0	0	1030	638	22	4		4	ASB5	4	177142508	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	26031	177142508	14011768	358	162488											
ODZ3	55714	broad.mit.edu	37	chr4	183601575	183601575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtgattccaaaaactacCgagacaggaaagaaaggggg	12	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183601575	A	A	183601575	1	1	207	0	1	0	0	0	0	0	0	0	10931	667	23	1		1	ODZ3	4	183601575	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	6459067	183601575	7552701	359	162489											
ODZ3	55714	broad.mit.edu	37	chr4	183675777	183675777	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggggtcctgtacattacTgaaactgatgagaagaaaat	11	5	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183675777	A	A	183675777	2	1	207	1	0	0	0	0	0	0	0	1	10931	1567	55	5		5	ODZ3	4	183675777	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	74202	183675777	7478499	360	162490											
TUBB4Q	56604	broad.mit.edu	37	chr4	190903801	190903801	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcgcccgtgtaccagtgGaggaaggccttgcgcctgaa	13	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190903801	T	T	190903801	2	4	207	1	0	0	0	0	0	0	0	1	16885	1161	41	3		3	TUBB4Q	4	190903801	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	7228024	190903801	250475	361	162491											
PLEKHG4B	153478	broad.mit.edu	37	chr5	143479	143479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcccttggcagctgccctGtctctgtctccgcagggacc	11	16	2	0	rs139992460	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143479	T	T	143479	1	4	207	0	1	0	0	0	0	0	0	0	12167	1392	48	3		3	PLEKHG4B	5	143479	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08		143479	180771781	362	162492											
SLC12A7	10723	broad.mit.edu	37	chr5	1081938	1081938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggccgcccactccccggCaggtgccactggtggccgga	16	16	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1081938	A	A	1081938	1	1	207	0	1	0	0	0	0	0	0	0	14501	725	25	3		3	SLC12A7	5	1081938	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	938459	1081938	179833322	363	162493											
SLC12A7	10723	broad.mit.edu	37	chr5	1093802	1093802	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacatggtcacaggcggccCgcacctcgccgtgggccccc	14	18	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1093802	A	A	1093802	1	1	207	0	1	0	0	0	0	0	0	0	14501	667	23	1		1	SLC12A7	5	1093802	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	11864	1093802	179821458	364	162494											
SLC6A18	348932	broad.mit.edu	37	chr5	1246128	1246128	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggacgcgcgcccagacacgGacatgcgcccggacacggac	15	16	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1246128	C	C	1246128	3	2	207	1	0	0	0	0	1	0	0	0	14795	1174	41	4	1868	4	SLC6A18	5	1246128	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	152326	1246128	179669132	365	162495											
TERT	7015	broad.mit.edu	37	chr5	1294798	1294798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacctgcgggggaagcgccCtgagtcgcctgcgctgctct	14	15	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1294798	A	A	1294798	1	1	207	0	1	0	0	0	0	0	0	0	15886	696	24	2		2	TERT	5	1294798	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	48670	1294798	179620462	366	162496											
ADAMTS16	170690	broad.mit.edu	37	chr5	5191879	5191880	+	Missense_Mutation	DNP	CC	AA	AA													aggtcttggactggccttcaCcattgcccatgagtctggac							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	5191880	AA	AA	5191879	3	1	207	1	0	0	0	0	1	0	0	0	261	507	18	3	1319	3	ADAMTS16	5	5191879	Missense_Mutation	DNP	CC	TCGA-73-4668-01A-01D-1265-08	3897081	5191879	175723381	367	162497											
PAPD7	11044	broad.mit.edu	37	chr5	6750603	6750604	+	Frame_Shift_Ins	INS	-	T	T													tcttctgtgtcttcactttcINStgggagtgacgttgtaagtg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6750604	T	T	6750603	7	5	207	1	0	1	1	0	0	0	0	0	11520	913	32	0	1131	0	PAPD7	5	6750603	Frame_Shift_Ins	INS	-	TCGA-73-4668-01A-01D-1265-08	1558724	6750603	174164657	368	162498											
SEMA5A	9037	broad.mit.edu	37	chr5	9379902	9379902	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaatgtgcatttagatgaCggctttgcaatcagtgcgtg	12	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9379902	G	G	9379902	1	3	207	0	1	0	0	0	0	0	0	0	14150	551	19	4		4	SEMA5A	5	9379902	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2629299	9379902	171535358	369	162499											
CTNND2	1501	broad.mit.edu	37	chr5	11385018	11385018	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttgatgggcgagctggtGctgtaggacttggccaggcg	18	7	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11385018	T	T	11385018	3	4	207	1	0	0	0	0	1	0	0	0	4054	1310	46	3	2805	3	CTNND2	5	11385018	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2005116	11385018	169530242	370	162500											
CTNND2	1501	broad.mit.edu	37	chr5	11412060	11412060	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgttttcctattacttttCtaagtctcattctaaagttc	4	8	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11412060	T	T	11412060	1	4	207	0	1	0	0	0	0	0	0	0	4054	928	32	4		4	CTNND2	5	11412060	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	27042	11412060	169503200	371	162501											
DNAH5	1767	broad.mit.edu	37	chr5	13824331	13824331	+	Frame_Shift_Del	DEL	G	-	-													tttagaaagattcatgtcccGtagtacacgcatgacaatcg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	13824331	-	-	13824331	7	5	207	1	0	1	0	1	0	0	0	0	4644	1144	40	0	7482	0	DNAH5	5	13824331	Frame_Shift_Del	DEL	G	TCGA-73-4668-01A-01D-1265-08	2412271	13824331	167090929	372	162502											
CDH18	1016	broad.mit.edu	37	chr5	19747198	19747198	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaatagcttgagcatgaaGcacatagtgggtcttctgct	10	8	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19747198	A	A	19747198	3	1	207	1	0	0	0	0	1	0	0	0	3133	971	34	4	2036	4	CDH18	5	19747198	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	5922867	19747198	161168062	373	162503											
CDH12	1010	broad.mit.edu	37	chr5	21751826	21751826	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctcccctctcggttgtaTtttagcctccacgactccct	5	16	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21751826	A	A	21751826	1	1	207	0	1	0	0	0	0	0	0	0	3128	1508	52	5		5	CDH12	5	21751826	3'UTR	SNP	T	TCGA-73-4668-01A-01D-1265-08	2004628	21751826	159163434	374	162504											
PRDM9	56979	broad.mit.edu	37	chr5	23527682	23527682	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	accagaggacacacacagggGagaagccctatgtctgcagg	13	11	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23527682	T	T	23527682	4	4	207	1	0	0	0	0	0	1	0	0	12569	1175	41	3	2523	3	PRDM9	5	23527682	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1775856	23527682	157387578	375	162505											
PDZD2	23037	broad.mit.edu	37	chr5	32057850	32057850	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggtaacaacattcttaTtgatctcctttatcctattt	3	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32057850	C	C	32057850	1	2	207	0	1	0	0	0	0	0	0	0	11795	1508	52	5		5	PDZD2	5	32057850	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	8530168	32057850	148857410	376	162506											
ADAMTS12	81792	broad.mit.edu	37	chr5	33658454	33658454	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttctgaaagcagagaatAcagaagctaaggcgcccaaa	9	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33658454	G	G	33658454	1	3	207	0	1	0	0	0	0	0	0	0	257	406	14	5		5	ADAMTS12	5	33658454	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1600604	33658454	147256806	377	162507											
ADAMTS12	81792	broad.mit.edu	37	chr5	33683200	33683200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgggttatggaacaaccCagtgacctagggtcagaaat	12	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33683200	A	A	33683200	3	1	207	1	0	0	0	0	1	0	0	0	257	594	21	2	4026	2	ADAMTS12	5	33683200	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	24746	33683200	147232060	378	162508											
DNAJC21	134218	broad.mit.edu	37	chr5	34946081	34946081	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttttagtgcttcccccCccttgtatgtatgtaataac	5	12	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34946081	A	A	34946081	1	1	207	0	1	0	0	0	0	0	0	0	4680	638	22	2		2	DNAJC21	5	34946081	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1262881	34946081	145969179	379	162509											
SPEF2	79925	broad.mit.edu	37	chr5	35628521	35628521	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcattagctctatgcgcaaCattgtattcatggtttttat	6	7	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35628521	T	T	35628521	1	4	207	0	1	0	0	0	0	0	0	0	15153	493	17	4		4	SPEF2	5	35628521	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	682440	35628521	145286739	380	162510											
LMBRD2	92255	broad.mit.edu	37	chr5	36142567	36142567	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttaaacaatgtgtccccTacaatgtttatatatttttt	3	6	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36142567	C	C	36142567	1	2	207	0	1	0	0	0	0	0	0	0	8917	1537	53	5		5	LMBRD2	5	36142567	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	514046	36142567	144772693	381	162511											
RANBP3L	202151	broad.mit.edu	37	chr5	36253962	36253962	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttaccattttcaaaagcAaaataaatcttgtagttgtt	4	5	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36253962	G	G	36253962	1	3	207	0	1	0	0	0	0	0	0	0	13138	145	5	5		5	RANBP3L	5	36253962	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	111395	36253962	144661298	382	162512											
RANBP3L	202151	broad.mit.edu	37	chr5	36271399	36271399	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacaaatatgggttgagCaatgacagatttttctgtga	9	4	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36271399	G	G	36271399	3	3	207	1	0	0	0	0	1	0	0	0	13138	710	25	4	1422	4	RANBP3L	5	36271399	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	17437	36271399	144643861	383	162513											
C6	729	broad.mit.edu	37	chr5	41199779	41199779	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtggtgggatttctctGtgatggattctactgttagt	12	4	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41199779	T	T	41199779	1	4	207	0	1	0	0	0	0	0	0	0	2338	1392	48	3		3	C6	5	41199779	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4928380	41199779	139715481	384	162514											
NNT	23530	broad.mit.edu	37	chr5	43653137	43653137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatcatgtacctaggctcGggtttgtgctgtgtcggtgc	14	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43653137	T	T	43653137	2	4	207	1	0	0	0	0	0	0	0	1	10605	1103	39	1		1	NNT	5	43653137	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	2453358	43653137	137262123	385	162515											
HCN1	348980	broad.mit.edu	37	chr5	45396549	45396549	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacaattcaatttactggttCaggttagctggttaaagaca	8	7	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45396549	G	G	45396549	1	3	207	0	1	0	0	0	0	0	0	0	7062	841	29	4		4	HCN1	5	45396549	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1743412	45396549	135518711	386	162516											
RGNEF	64283	broad.mit.edu	37	chr5	73200239	73200239	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tacagccttcaggtaactatCctcctctaatctttgacctt	4	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73200239	A	A	73200239	1	1	207	0	1	0	0	0	0	0	0	0	13391	870	30	3		3	RGNEF	5	73200239	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	27803690	73200239	107715021	387	162517											
GFM2	84340	broad.mit.edu	37	chr5	74054835	74054835	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaaagtatatatgctaTccaaatttcaaagctggtat	5	7	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74054835	A	A	74054835	1	1	207	0	1	0	0	0	0	0	0	0	6406	1450	50	5		5	GFM2	5	74054835	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	854596	74054835	106860425	388	162518											
FAM169A	26049	broad.mit.edu	37	chr5	74096754	74096754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtcttttcatcttcacCttgagaactgctaaattcag	8	9	5	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74096754	A	A	74096754	3	1	207	1	0	0	0	0	1	0	0	0	5532	681	24	2	974	2	FAM169A	5	74096754	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	41919	74096754	106818506	389	162519											
RASGRF2	5924	broad.mit.edu	37	chr5	80408616	80408616	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgtattttcactactgccGctgtggtgctggggaaactc	11	10	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80408616	A	A	80408616	3	1	207	1	0	0	0	0	1	0	0	0	13181	1087	38	4	2080	4	RASGRF2	5	80408616	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	6311862	80408616	100506644	390	162520											
ARRDC3	57561	broad.mit.edu	37	chr5	90670930	90670930	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgtgtttggtaaatggCtgcctttggcaccaccattc	11	11	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90670930	T	T	90670930	3	4	207	1	0	0	0	0	1	0	0	0	988	797	28	4	581	4	ARRDC3	5	90670930	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	10262314	90670930	90244330	391	162521											
MCTP1	79772	broad.mit.edu	37	chr5	94253649	94253649	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctctgctctgcagaagccCaggacaggaagagctggcct	13	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94253649	T	T	94253649	2	4	207	1	0	0	0	0	0	0	0	1	9493	581	21	4		4	MCTP1	5	94253649	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	3582719	94253649	86661611	392	162522											
FER	2241	broad.mit.edu	37	chr5	108120974	108120974	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgggatctcaacgaaGgcaaacacctttatatgcca	9	10	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108120974	T	T	108120974	1	4	207	0	1	0	0	0	0	0	0	0	5870	1015	35	2		2	FER	5	108120974	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	13867325	108120974	72794286	393	162523											
SEMA6A	57556	broad.mit.edu	37	chr5	115831129	115831129	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatagtttctgcaggaagGgttgaaggcattagttccac	11	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115831129	T	T	115831129	3	4	207	1	0	0	0	0	1	0	0	0	14152	1232	43	2	2724	2	SEMA6A	5	115831129	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	7710155	115831129	65084131	394	162524											
DMXL1	1657	broad.mit.edu	37	chr5	118485771	118485771	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttacttgcagcagatgatGatagctgttactcatctttg	8	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118485771	T	T	118485771	3	4	207	1	0	0	0	0	1	0	0	0	4634	1290	45	3	4319	3	DMXL1	5	118485771	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2654642	118485771	62429489	395	162525											
ADAMTS19	171019	broad.mit.edu	37	chr5	129037059	129037059	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcttttaacttgtttccaGtgactcttgctttactttca	4	9	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129037059	T	T	129037059	1	4	207	0	1	0	0	0	0	0	0	0	264	1044	36	3		3	ADAMTS19	5	129037059	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	10551288	129037059	51878201	396	162526											
C5orf56	441108	broad.mit.edu	37	chr5	131796143	131796143	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctttttcacactggccaTctgagtctcataaggagact	8	10	4	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131796143	C	C	131796143	1	2	207	0	1	0	0	0	0	0	0	0	2335	1450	50	5		5	C5orf56	5	131796143	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2759084	131796143	49119117	397	162527											
PHF15	23338	broad.mit.edu	37	chr5	133909619	133909619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattagtaggcccagacggGggcctgcaagggtcctgagt	15	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133909619	T	T	133909619	1	4	207	0	1	0	0	0	0	0	0	0	11921	1247	43	2		2	PHF15	5	133909619	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2113476	133909619	47005641	398	162528											
LOC153328	153328	broad.mit.edu	37	chr5	135186257	135186257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggaccagggccacagccCcacaccagcatgcaggtggg	15	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135186257	A	A	135186257	1	1	207	0	1	0	0	0	0	0	0	0	8949	638	22	2		2	LOC153328	5	135186257	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1276638	135186257	45729003	399	162529											
TRPC7	57113	broad.mit.edu	37	chr5	135583167	135583167	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagatactcacgttgtaaaCgctgggttgtatttggcacc	10	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135583167	A	A	135583167	2	1	207	1	0	0	0	0	0	0	0	1	16709	523	19	3		3	TRPC7	5	135583167	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	396910	135583167	45332093	400	162530											
PCDHA10	56139	broad.mit.edu	37	chr5	140237760	140237760	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcggtgtccagcttgctGgtgctcacgctgctgctgta	14	12	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140237760	C	C	140237760	2	2	207	1	0	0	0	0	0	0	0	1	11614	1335	47	4		4	PCDHA10	5	140237760	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	4654593	140237760	40677500	401	162531											
PCDHA11	56138	broad.mit.edu	37	chr5	140250004	140250004	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgtgggccacggccaGggtatccgtggaggtggccg	17	11	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140250004	C	C	140250004	3	2	207	1	0	0	0	0	1	0	0	0	11615	1000	35	4	1318	4	PCDHA11	5	140250004	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	12244	140250004	40665256	402	162532											
PCDHB7	56129	broad.mit.edu	37	chr5	140553859	140553859	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacagacagagactcgggCaccaacgcccaggtcatcta	10	15	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140553859	A	A	140553859	2	1	207	1	0	0	0	0	0	0	0	1	11641	697	25	3		3	PCDHB7	5	140553859	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	303855	140553859	40361401	403	162533											
PCDHGA1	56114	broad.mit.edu	37	chr5	140711869	140711869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcgcgggacagtggggatCcgcccctcagcagcaacgtg	16	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140711869	A	A	140711869	3	1	207	1	0	0	0	0	1	0	0	0	11644	855	30	3	1620	3	PCDHGA1	5	140711869	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	158010	140711869	40203391	404	162534											
PCDHGA3	56112	broad.mit.edu	37	chr5	140725651	140725651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcgagccctccgccaaacCcaacgattcggacctcactc	6	20	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140725651	A	A	140725651	3	1	207	1	0	0	0	0	1	0	0	0	11649	623	22	2	2053	2	PCDHGA3	5	140725651	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	13782	140725651	40189609	405	162535											
PCDHGA4	56111	broad.mit.edu	37	chr5	140736053	140736053	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgccactgaccagggaaCtcctccactgtctacagaaa	7	14	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140736053	A	A	140736053	3	1	207	1	0	0	0	0	1	0	0	0	11650	565	20	3	1288	3	PCDHGA4	5	140736053	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	10402	140736053	40179207	406	162536											
ARAP3	64411	broad.mit.edu	37	chr5	141051750	141051750	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacagtccgcacactgccGgttggcccgattagaccaga	10	16	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141051750	A	A	141051750	3	1	207	1	0	0	0	0	1	0	0	0	842	1115	39	4	3226	4	ARAP3	5	141051750	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	315697	141051750	39863510	407	162537											
PPP2R2B	5521	broad.mit.edu	37	chr5	146086015	146086015	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccatcttccagcagcttcCtgtaggtggcgatctcgatg	10	13	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146086015	A	A	146086015	1	1	207	0	1	0	0	0	0	0	0	0	12486	696	24	2		2	PPP2R2B	5	146086015	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	5034265	146086015	34829245	408	162538											
SH3TC2	79628	broad.mit.edu	37	chr5	148431894	148431894	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagttttggtcaagtgacaaAttttttccaggattagtggc	10	5	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148431894	T	T	148431894	1	4	207	0	1	0	0	0	0	0	0	0	14375	116	4	5		5	SH3TC2	5	148431894	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2345879	148431894	32483366	409	162539											
PDE6A	5145	broad.mit.edu	37	chr5	149245776	149245776	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcaatgaagccgacttgaAgcttagggagttcatctgct	11	8	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149245776	T	T	149245776	3	4	207	1	0	0	0	0	1	0	0	0	11739	72	3	5	279	5	PDE6A	5	149245776	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	813882	149245776	31669484	410	162540											
SGCD	6444	broad.mit.edu	37	chr5	155885362	155885362	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgtgactgtaggttttggggGattacttttctgatatgttt	12	4	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155885362	C	C	155885362	1	2	207	0	1	0	0	0	0	0	0	0	14314	1189	41	4		4	SGCD	5	155885362	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6639586	155885362	25029898	411	162541											
C5orf54	63920	broad.mit.edu	37	chr5	159822592	159822592	+	Intron	SNP	C	A	A													cattaaaaaccagtggctaaCtgaattaaaacaaagccaca							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159822592	A	A	159822592	1	1	207	0	1	0	0	0	0	0	0	0	2333	580	20	3		3	C5orf54	5	159822592	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3937230	159822592	21092668	412	162542	685	2									
C5orf54	63920	broad.mit.edu	37	chr5	159822598	159822598	+	Intron	SNP	T	G	G													aaaccagtggctaactgaatTaaaacaaagccacatcacat							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159822598	G	G	159822598	1	3	207	0	1	0	0	0	0	0	0	0	2333	1769	61	5		5	C5orf54	5	159822598	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	6	159822598	21092662	413	162543	685	2									
GABRA6	2559	broad.mit.edu	37	chr5	161117334	161117334	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctggattaataaggaGtccgtcccagcaagaactgt	9	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161117334	T	T	161117334	3	4	207	1	0	0	0	0	1	0	0	0	6225	1020	36	3	827	3	GABRA6	5	161117334	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1294736	161117334	19797926	414	162544											
GABRA1	2554	broad.mit.edu	37	chr5	161277764	161277764	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttataacctgatgtttctTgctagagacattgatctcta	8	7	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161277764	A	A	161277764	1	1	207	0	1	0	0	0	0	0	0	0	6220	1827	63	5		5	GABRA1	5	161277764	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	160430	161277764	19637496	415	162545											
DOCK2	1794	broad.mit.edu	37	chr5	169509880	169509880	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagctgctgctgactagggCtgcatgggagagccagggag	18	8	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169509880	A	A	169509880	1	1	207	0	1	0	0	0	0	0	0	0	4727	812	28	3		3	DOCK2	5	169509880	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	8232116	169509880	11405380	416	162546											
UBTD2	92181	broad.mit.edu	37	chr5	171639032	171639033	+	Missense_Mutation	DNP	GC	TG	TG													tggaatactgtgtctgtgctGcgaaccacaagcttgaggtc					rs145414052		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	171639033	TG	TG	171639032	3	4	207	1	0	0	0	0	1	0	0	0	17034	1306	46	3	201	3	UBTD2	5	171639032	Missense_Mutation	DNP	GC	TCGA-73-4668-01A-01D-1265-08	2129152	171639032	9276228	417	162547											
BOD1	91272	broad.mit.edu	37	chr5	173035135	173035135	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggtcaactctcccactgCcgaacttgctcccctttcaa	5	18	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173035135	A	A	173035135	1	1	207	0	1	0	0	0	0	0	0	0	1488	754	26	3		3	BOD1	5	173035135	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	1396103	173035135	7880125	418	162548											
GRM6	2916	broad.mit.edu	37	chr5	178418461	178418461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaaagatgatgatgcccCgggcgttgggcgtctccatg	15	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178418461	A	A	178418461	3	1	207	1	0	0	0	0	1	0	0	0	6867	652	23	1	1844	1	GRM6	5	178418461	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	5383326	178418461	2496799	419	162549											
RASGEF1C	255426	broad.mit.edu	37	chr5	179554591	179554591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctcacttttgggacagCccgtaagagcctcctacctt	10	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179554591	A	A	179554591	1	1	207	0	1	0	0	0	0	0	0	0	13179	754	26	3		3	RASGEF1C	5	179554591	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1136130	179554591	1360669	420	162550											
MAPK9	5601	broad.mit.edu	37	chr5	179676194	179676194	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagcatgctaaataaactaCttcacatccgtgagggtcgt	9	9	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179676194	A	A	179676194	1	1	207	0	1	0	0	0	0	0	0	0	9379	580	20	3		3	MAPK9	5	179676194	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	121603	179676194	1239066	421	162551											
EXOC2	55770	broad.mit.edu	37	chr6	637563	637563	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaaagccagataattctttCgtctttttggagcattctgt	8	7	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	637563	A	A	637563	1	1	207	0	1	0	0	0	0	0	0	0	5344	899	31	3		3	EXOC2	6	637563	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08		637563	170477504	422	162552											
CAGE1	285782	broad.mit.edu	37	chr6	7339849	7339849	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcactgtatcattcttatGcctttgtgtcctcatagctt	7	10	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7339849	T	T	7339849	1	4	207	0	1	0	0	0	0	0	0	0	2598	1334	46	3		3	CAGE1	6	7339849	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6702286	7339849	163775218	423	162553											
CAGE1	285782	broad.mit.edu	37	chr6	7341318	7341318	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagctgcagctgtgaaaGgggatctccaatgcctttag	12	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7341318	T	T	7341318	1	4	207	0	1	0	0	0	0	0	0	0	2598	1015	35	2		2	CAGE1	6	7341318	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1469	7341318	163773749	424	162554											
GCM2	9247	broad.mit.edu	37	chr6	10874376	10874376	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggggaatagccacagtgggtCtgatggcccggcaatctcct	14	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10874376	A	A	10874376	3	1	207	1	0	0	0	0	1	0	0	0	6360	913	32	3	151	3	GCM2	6	10874376	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3533058	10874376	160240691	425	162555											
HIST1H1D	3007	broad.mit.edu	37	chr6	26234700	26234700	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctttaccttcttaggagtCtttttgatgcttttcttcgg	7	8	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26234700	A	A	26234700	3	1	207	1	0	0	0	0	1	0	0	0	7192	912	32	3	207	3	HIST1H1D	6	26234700	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	15360324	26234700	144880367	426	162556											
HIST1H4I	8294	broad.mit.edu	37	chr6	27107385	27107385	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagggccgcaccctctatGgcttcggcggctaaatggca	13	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27107385	T	T	27107385	3	4	207	1	0	0	0	0	1	0	0	0	7240	1348	47	2	300	2	HIST1H4I	6	27107385	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	872685	27107385	144007682	427	162557											
HIST1H2BL	8340	broad.mit.edu	37	chr6	27775345	27775345	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgacggccttggtgccctCcgacaccgcgtgcttggcca	14	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27775345	A	A	27775345	4	1	207	1	0	0	0	0	0	1	0	0	7218	864	30	3	44	3	HIST1H2BL	6	27775345	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	667960	27775345	143339722	428	162558											
HIST1H2AJ	8331	broad.mit.edu	37	chr6	27782674	27782674	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gactcgagtatgcaggatacCtattttgattgggcaaaact	10	7	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27782674	G	G	27782674	1	3	207	0	1	0	0	0	0	0	0	0	7203	696	24	4		4	HIST1H2AJ	6	27782674	5'Flank	SNP	C	TCGA-73-4668-01A-01D-1265-08	7329	27782674	143332393	429	162559											
DDAH2	23564	broad.mit.edu	37	chr6	31696006	31696006	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaacagtgcgaggtccccCcatgccgcagagaccgcgca	11	17	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31696006	A	A	31696006	3	1	207	1	0	0	0	0	1	0	0	0	4355	623	22	2	334	2	DDAH2	6	31696006	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3913332	31696006	139419061	430	162560											
C6orf127	340204	broad.mit.edu	37	chr6	35755491	35755491	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagcctggagaaggcagccAgaggtgccactctgagcagc	14	13	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35755491	T	T	35755491	1	4	207	0	1	0	0	0	0	0	0	0	2350	203	7	5		5	C6orf127	6	35755491	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	4059485	35755491	135359576	431	162561											
RNF8	9025	broad.mit.edu	37	chr6	37336320	37336320	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttaagggtctattccattCatcagggagactacatccaa	7	10	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37336320	T	T	37336320	3	4	207	1	0	0	0	0	1	0	0	0	13611	826	29	4	311	4	RNF8	6	37336320	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1580829	37336320	133778747	432	162562											
DNAH8	1769	broad.mit.edu	37	chr6	38816408	38816408	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaaatgtgattttttcCgttcttaccttttagataca	5	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38816408	T	T	38816408	1	4	207	0	1	0	0	0	0	0	0	0	4647	667	23	4		4	DNAH8	6	38816408	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1480088	38816408	132298659	433	162563											
DNAH8	1769	broad.mit.edu	37	chr6	38881720	38881720	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagtggcttccataaaaGcagacgaagtgagtttgcat	12	7	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38881720	A	A	38881720	3	1	207	1	0	0	0	0	1	0	0	0	4647	971	34	4	9554	4	DNAH8	6	38881720	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	65312	38881720	132233347	434	162564											
KIF6	221458	broad.mit.edu	37	chr6	39545914	39545914	+	Frame_Shift_Del	DEL	C	-	-													atccttcagttcctggatttCcttttgtaggcgtttaatca							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39545914	-	-	39545914	7	5	207	1	0	1	0	1	0	0	0	0	8378	864	30	0	1401	0	KIF6	6	39545914	Frame_Shift_Del	DEL	C	TCGA-73-4668-01A-01D-1265-08	664194	39545914	131569153	435	162565											
LRFN2	57497	broad.mit.edu	37	chr6	40400206	40400206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggagcgggcaaagatgGgatcagggggcagcttctgc	18	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40400206	T	T	40400206	3	4	207	1	0	0	0	0	1	0	0	0	9025	1232	43	2	1730	2	LRFN2	6	40400206	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	854292	40400206	130714861	436	162566											
TRERF1	55809	broad.mit.edu	37	chr6	42233435	42233435	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaatcatgagagacacCccagaaaatcctccccgtct	6	13	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42233435	A	A	42233435	1	1	207	0	1	0	0	0	0	0	0	0	16599	638	22	2		2	TRERF1	6	42233435	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1833229	42233435	128881632	437	162567											
CUL7	9820	broad.mit.edu	37	chr6	43011260	43011260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaggtgagtgagacggCgcacccgcgagaagaaagct	15	11	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43011260	A	A	43011260	3	1	207	1	0	0	0	0	1	0	0	0	4093	768	27	3	1855	3	CUL7	6	43011260	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	777825	43011260	128103807	438	162568											
CUL9	23113	broad.mit.edu	37	chr6	43152288	43152288	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaactgccctgggctgttAggtgagcgggcactatctaa	13	11	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43152288	T	T	43152288	3	4	207	1	0	0	0	0	1	0	0	0	4094	417	15	5	242	5	CUL9	6	43152288	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	141028	43152288	127962779	439	162569											
CRIP3	401262	broad.mit.edu	37	chr6	43274041	43274041	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caatttctgcctaatgacatCaccttctcagctggtggtgg	9	11	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43274041	A	A	43274041	2	1	207	1	0	0	0	0	0	0	0	1	3908	813	29	3		3	CRIP3	6	43274041	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	121753	43274041	127841026	440	162570											
VEGFA	7422	broad.mit.edu	37	chr6	43746589	43746589	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catcaccatcttaacccttcCctgttttgctcttttctctc	2	16	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43746589	T	T	43746589	1	4	207	0	1	0	0	0	0	0	0	0	17277	638	22	4		4	VEGFA	6	43746589	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	472548	43746589	127368478	441	162571											
PKHD1	5314	broad.mit.edu	37	chr6	51897943	51897943	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctctgatcacagtcacattCacaatgcgtccatctttccc	4	16	5	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51897943	A	A	51897943	2	1	207	1	0	0	0	0	0	0	0	1	12066	813	29	3		3	PKHD1	6	51897943	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	8151354	51897943	119217124	442	162572											
ICK	22858	broad.mit.edu	37	chr6	52883302	52883302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctggagccctgtacctGgaggaacaaaggttaactgc	11	10	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52883302	T	T	52883302	1	4	207	0	1	0	0	0	0	0	0	0	7554	1363	47	2		2	ICK	6	52883302	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	985359	52883302	118231765	443	162573											
C6orf142	90523	broad.mit.edu	37	chr6	53883743	53883743	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcctgcaatatctaacAtgtaagcacgtcgaatcatt	6	9	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53883743	T	T	53883743	1	4	207	0	1	0	0	0	0	0	0	0	2356	232	8	5		5	C6orf142	6	53883743	5'UTR	SNP	A	TCGA-73-4668-01A-01D-1265-08	1000441	53883743	117231324	444	162574											
HCRTR2	3062	broad.mit.edu	37	chr6	55128554	55128554	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctttctggtgacataCatggcaccactgtgtctcat	8	10	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55128554	T	T	55128554	2	4	207	1	0	0	0	0	0	0	0	1	7069	489	17	4		4	HCRTR2	6	55128554	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	1244811	55128554	115986513	445	162575											
DST	667	broad.mit.edu	37	chr6	56357950	56357950	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttattttgtttgtttcagTttaaatattctctggcagat	8	4	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56357950	C	C	56357950	1	2	207	0	1	0	0	0	0	0	0	0	4823	1740	60	5		5	DST	6	56357950	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1229396	56357950	114757117	446	162576											
DST	667	broad.mit.edu	37	chr6	56425222	56425222	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagttctgcctcaaacgaCtaacaagggaaaaataataa	6	8	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56425222	T	T	56425222	5	4	207	1	0	0	0	0	0	0	1	0	4823	579	20	4	9258	4	DST	6	56425222	Splice_Site	SNP	C	TCGA-73-4668-01A-01D-1265-08	67272	56425222	114689845	447	162577											
PHF3	23469	broad.mit.edu	37	chr6	64421017	64421017	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttttaaaaccaagctactCtttagcttattaccttaaac	3	9	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64421017	T	T	64421017	1	4	207	0	1	0	0	0	0	0	0	0	11931	928	32	4		4	PHF3	6	64421017	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	7995795	64421017	106694050	448	162578											
EYS	346007	broad.mit.edu	37	chr6	66053950	66053950	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcttttgtgccttcatgtGggaaccaacatgaagaatta	8	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66053950	A	A	66053950	3	1	207	1	0	0	0	0	1	0	0	0	5375	1348	47	4	7952	4	EYS	6	66053950	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1632933	66053950	105061117	449	162579											
BAI3	577	broad.mit.edu	37	chr6	69666701	69666701	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgagcagcgatgccctGgtgagaatgaacccaaatta	11	9	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69666701	C	C	69666701	3	2	207	1	0	0	0	0	1	0	0	0	1305	1362	47	4	1547	4	BAI3	6	69666701	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3612751	69666701	101448366	450	162580											
LMBRD1	55788	broad.mit.edu	37	chr6	70411412	70411412	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgaaaccagaatctattcCagctgaatgaagagctttat	7	7	1	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70411412	A	A	70411412	4	1	207	1	0	0	0	0	0	1	0	0	8916	603	21	2	640	2	LMBRD1	6	70411412	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	744711	70411412	100703655	451	162581											
COL19A1	1310	broad.mit.edu	37	chr6	70672840	70672840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaataaaatatttaacttGttttgtgcattccctataag	5	5	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70672840	T	T	70672840	1	4	207	0	1	0	0	0	0	0	0	0	3708	1392	48	3		3	COL19A1	6	70672840	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	261428	70672840	100442227	452	162582											
CD109	135228	broad.mit.edu	37	chr6	74491064	74491064	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taagtaatacatggcgacatGcttgtatttgtctttcacat	7	7	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74491064	A	A	74491064	1	1	207	0	1	0	0	0	0	0	0	0	2993	1334	46	4		4	CD109	6	74491064	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3818224	74491064	96624003	453	162583											
SNAP91	9892	broad.mit.edu	37	chr6	84270503	84270503	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggaaaaattatattctGtaggaatacttagtaatttg	8	2	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84270503	T	T	84270503	1	4	207	0	1	0	0	0	0	0	0	0	14947	1392	48	3		3	SNAP91	6	84270503	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	9779439	84270503	86844564	454	162584											
MRAP2	112609	broad.mit.edu	37	chr6	84765081	84765081	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taacagaacctcccagcaatCggcatctaattctgattaca	5	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84765081	A	A	84765081	4	1	207	1	0	0	0	0	0	1	0	0	9848	893	31	3	46	3	MRAP2	6	84765081	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	494578	84765081	86349986	455	162585											
MRAP2	112609	broad.mit.edu	37	chr6	84772767	84772767	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacaggagactgaggaaatAgaaactactacccagggccg	11	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84772767	C	C	84772767	1	2	207	0	1	0	0	0	0	0	0	0	9848	435	15	5		5	MRAP2	6	84772767	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	7686	84772767	86342300	456	162586											
TBX18	9096	broad.mit.edu	37	chr6	85457845	85457845	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgaatttatcagaagcctCtgcccaacctcaacaacctg	6	14	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85457845	T	T	85457845	1	4	207	0	1	0	0	0	0	0	0	0	15775	928	32	4		4	TBX18	6	85457845	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	685078	85457845	85657222	457	162587											
MAP3K7	6885	broad.mit.edu	37	chr6	91257068	91257068	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcaagctctccacactgctCccacgggaggctcccaagct	10	17	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91257068	A	A	91257068	2	1	207	1	0	0	0	0	0	0	0	1	9347	842	30	3		3	MAP3K7	6	91257068	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	5799223	91257068	79857999	458	162588											
GRIK2	2898	broad.mit.edu	37	chr6	102247725	102247725	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtcaagctgaatgaagtgaGattattgtggtttttctagc	11	4	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102247725	A	A	102247725	1	1	207	0	1	0	0	0	0	0	0	0	6840	957	33	4		4	GRIK2	6	102247725	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	10990657	102247725	68867342	459	162589											
SEC63	11231	broad.mit.edu	37	chr6	108214748	108214748	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtggtaatagcacagGtgtaggttttttttttaaag	11	3	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108214748	C	C	108214748	3	2	207	1	0	0	0	0	1	0	0	0	14118	1261	44	4	694	4	SEC63	6	108214748	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	5967023	108214748	62900319	460	162590											
SMPD2	6610	broad.mit.edu	37	chr6	109762905	109762905	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcccttccctatcctGcctgcactctccagtctcct	5	20	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109762905	T	T	109762905	1	4	207	0	1	0	0	0	0	0	0	0	14919	1334	46	3		3	SMPD2	6	109762905	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1548157	109762905	61352162	461	162591											
HS3ST5	222537	broad.mit.edu	37	chr6	114405568	114405568	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtcacagcattttcagCagcagcctgctcttcttttt	7	13	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114405568	T	T	114405568	1	4	207	0	1	0	0	0	0	0	0	0	7435	725	25	4		4	HS3ST5	6	114405568	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4642663	114405568	56709499	462	162592											
FRK	2444	broad.mit.edu	37	chr6	116289620	116289620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatggtttgcctataccCgcctgaggtaataaaatgac	10	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116289620	A	A	116289620	1	1	207	0	1	0	0	0	0	0	0	0	6108	667	23	1		1	FRK	6	116289620	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1884052	116289620	54825447	463	162593											
KPNA5	3841	broad.mit.edu	37	chr6	117053462	117053462	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatttcagcagcaggaagcAccaatggatggatttcaact	9	8	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117053462	G	G	117053462	2	3	207	1	0	0	0	0	0	0	0	1	8504	146	6	5		5	KPNA5	6	117053462	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	763842	117053462	54061605	464	162594											
GPRC6A	222545	broad.mit.edu	37	chr6	117127557	117127557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggttgaaaggcgttgggGttctgacagtcacgagcttg	15	7	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117127557	T	T	117127557	3	4	207	1	0	0	0	0	1	0	0	0	6794	1252	44	3	1485	3	GPRC6A	6	117127557	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	74095	117127557	53987510	465	162595											
CLVS2	134829	broad.mit.edu	37	chr6	123384732	123384732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagggaattcacattcctGggagaagtaatgacaaaaag	12	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123384732	T	T	123384732	1	4	207	0	1	0	0	0	0	0	0	0	3604	1363	47	2		2	CLVS2	6	123384732	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6257175	123384732	47730335	466	162596											
TRDN	10345	broad.mit.edu	37	chr6	123673692	123673692	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttttttttaccttgctccActgtcttggttgttttctct	5	9	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123673692	T	T	123673692	3	4	207	1	0	0	0	0	1	0	0	0	16592	159	6	5	912	5	TRDN	6	123673692	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	288960	123673692	47441375	467	162597											
RSPO3	84870	broad.mit.edu	37	chr6	127517001	127517001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggaaaagaaaaaaacCtaataaaggagaaagtaaag	11	2	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127517001	A	A	127517001	3	1	207	1	0	0	0	0	1	0	0	0	13822	681	24	2	686	2	RSPO3	6	127517001	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3843309	127517001	43598066	468	162598											
PTPRK	5796	broad.mit.edu	37	chr6	128562491	128562491	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaatcagaaatgcaaattgtCaggccccaccccagacctat	7	13	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128562491	A	A	128562491	1	1	207	0	1	0	0	0	0	0	0	0	12913	841	29	3		3	PTPRK	6	128562491	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1045490	128562491	42552576	469	162599											
LAMA2	3908	broad.mit.edu	37	chr6	129419336	129419336	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgttccagatcgcgtatGtgattgtgaaggcagctaac	13	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129419336	A	A	129419336	3	1	207	1	0	0	0	0	1	0	0	0	8678	1377	48	4	429	4	LAMA2	6	129419336	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	856845	129419336	41695731	470	162600											
LAMA2	3908	broad.mit.edu	37	chr6	129468348	129468348	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgaaataagagctggCagttaggatgatagactttg	14	4	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129468348	T	T	129468348	1	4	207	0	1	0	0	0	0	0	0	0	8678	725	25	4		4	LAMA2	6	129468348	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	49012	129468348	41646719	471	162601											
LAMA2	3908	broad.mit.edu	37	chr6	129749051	129749051	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttaatcgggttgttactgAtaagatattctatcacacta	7	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129749051	G	G	129749051	1	3	207	0	1	0	0	0	0	0	0	0	8678	348	12	5		5	LAMA2	6	129749051	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	280703	129749051	41366016	472	162602											
MYB	4602	broad.mit.edu	37	chr6	135514873	135514873	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtattttatcagtaaagtGttttttttctctcagtccca	6	7	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135514873	T	T	135514873	1	4	207	0	1	0	0	0	0	0	0	0	10101	1392	48	3		3	MYB	6	135514873	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5765822	135514873	35600194	473	162603											
AHI1	54806	broad.mit.edu	37	chr6	135778795	135778795	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgggataaaccgggctatCtcggcttgttatttcatgaa	10	7	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135778795	A	A	135778795	3	1	207	1	0	0	0	0	1	0	0	0	413	913	32	3	2743	3	AHI1	6	135778795	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	263922	135778795	35336272	474	162604											
BCLAF1	9774	broad.mit.edu	37	chr6	136599805	136599805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaccccttcctctgtaccCataaggtcgtctcattcctc	4	17	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136599805	A	A	136599805	3	1	207	1	0	0	0	0	1	0	0	0	1388	594	21	2	2588	2	BCLAF1	6	136599805	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	821010	136599805	34515262	475	162605											
ECT2L	345930	broad.mit.edu	37	chr6	139135620	139135620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtcacttcctcccctcccCcttatagctctttcaggaaa	4	16	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139135620	A	A	139135620	1	1	207	0	1	0	0	0	0	0	0	0	4942	638	22	2		2	ECT2L	6	139135620	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2535815	139135620	31979447	476	162606											
GRM1	2911	broad.mit.edu	37	chr6	146492787	146492787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagcttgcaagtcataCtgagtacatcaaagatgact	7	10	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146492787	A	A	146492787	1	1	207	0	1	0	0	0	0	0	0	0	6862	580	20	3		3	GRM1	6	146492787	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	7357167	146492787	24622280	477	162607											
AKAP12	9590	broad.mit.edu	37	chr6	151646946	151646946	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactaggcgtctgccggggaGggcagggacccgctaagctg	18	11	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151646946	A	A	151646946	1	1	207	0	1	0	0	0	0	0	0	0	448	1015	35	4		4	AKAP12	6	151646946	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5154159	151646946	19468121	478	162608											
SYNE1	23345	broad.mit.edu	37	chr6	152605312	152605312	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcatccatcaatgcctggAggaaagactgtggaatcaca	9	10	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152605312	G	G	152605312	1	3	207	0	1	0	0	0	0	0	0	0	15564	319	11	5		5	SYNE1	6	152605312	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	958366	152605312	18509755	479	162609											
SYNE1	23345	broad.mit.edu	37	chr6	152702063	152702063	+	Intron	DEL	T	-	-													cgtgtttttagttagcaagaTtttttttttaaggaatgatg					rs75060719		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152702063	-	-	152702063	6	5	207	0	1	1	0	1	0	0	0	0	15564	1508	52	0		0	SYNE1	6	152702063	Intron	DEL	T	TCGA-73-4668-01A-01D-1265-08	96751	152702063	18413004	480	162610											
TIAM2	26230	broad.mit.edu	37	chr6	155532427	155532427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttcccacagggagaaaatgGagcagacattcagggtaaga	12	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155532427	C	C	155532427	3	2	207	1	0	0	0	0	1	0	0	0	16014	1175	41	4	3200	4	TIAM2	6	155532427	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2830364	155532427	15582640	481	162611											
FNDC1	84624	broad.mit.edu	37	chr6	159646436	159646436	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataacatagtcaaaagtttAgatttttctcctctttgatt	4	6	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159646436	C	C	159646436	1	2	207	0	1	0	0	0	0	0	0	0	6026	435	15	5		5	FNDC1	6	159646436	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	4114009	159646436	11468631	482	162612											
LPA	4018	broad.mit.edu	37	chr6	160969701	160969701	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgtcaggccactggaaattCcaaagcaatacaagttacag	8	9	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160969701	A	A	160969701	1	1	207	0	1	0	0	0	0	0	0	0	8990	870	30	3		3	LPA	6	160969701	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1323265	160969701	10145366	483	162613											
MAP3K4	4216	broad.mit.edu	37	chr6	161494668	161494671	+	Intron	DEL	TTTC	-	-													agaagcagtggggaggaattTttctttctttctttgtttct							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	161494671	-	-	161494668	6	5	207	0	1	1	0	1	0	0	0	0	9344	1856	64	0		0	MAP3K4	6	161494668	Intron	DEL	TTTC	TCGA-73-4668-01A-01D-1265-08	524967	161494668	9620399	484	162614											
SMOC2	64094	broad.mit.edu	37	chr6	168999360	168999360	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctctcctgctgtgcccccCacgctggcaggccctcctgc	10	21	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168999360	A	A	168999360	1	1	207	0	1	0	0	0	0	0	0	0	14916	609	21	2		2	SMOC2	6	168999360	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	7504692	168999360	2115707	485	162615											
THBS2	7058	broad.mit.edu	37	chr6	169635041	169635041	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggagctcagagcaagaCccggggtggagaacgtgagt	19	7	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169635041	A	A	169635041	1	1	207	0	1	0	0	0	0	0	0	0	15977	522	18	3		3	THBS2	6	169635041	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	635681	169635041	1480026	486	162616											
GET4	51608	broad.mit.edu	37	chr7	930559	930559	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatttttctgtctttcctTtgcagaacaaaactattgtg	5	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	930559	G	G	930559	1	3	207	0	1	0	0	0	0	0	0	0	6400	1856	64	5		5	GET4	7	930559	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08		930559	158208104	487	162617											
COL28A1	340267	broad.mit.edu	37	chr7	7420472	7420472	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcacctttctttcccacatCgccccgttctccgtgctctc	4	19	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7420472	T	T	7420472	3	4	207	1	0	0	0	0	1	0	0	0	3718	884	31	4	1178	4	COL28A1	7	7420472	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	6489913	7420472	151718191	488	162618											
NXPH1	30010	broad.mit.edu	37	chr7	8791179	8791179	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattgtcgcattgaatatgAaaaggttgacaaggctacca	9	6	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8791179	G	G	8791179	3	3	207	1	0	0	0	0	1	0	0	0	10885	246	9	5	602	5	NXPH1	7	8791179	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	1370707	8791179	150347484	489	162619											
ETV1	2115	broad.mit.edu	37	chr7	13949253	13949253	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgaggcaaagtgtaaaacCtaccatcgaatttttctggg	9	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13949253	T	T	13949253	1	4	207	0	1	0	0	0	0	0	0	0	5319	696	24	4		4	ETV1	7	13949253	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	5158074	13949253	145189410	490	162620											
TMEM195	392636	broad.mit.edu	37	chr7	15433872	15433872	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgttagtatataaatgctCacattagaaactcacataaa	5	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15433872	A	A	15433872	1	1	207	0	1	0	0	0	0	0	0	0	16240	841	29	3		3	TMEM195	7	15433872	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1484619	15433872	143704791	491	162621											
ABCB5	340273	broad.mit.edu	37	chr7	20685729	20685729	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctccttgattcttaatggaGaacctggatataccatcggg	9	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20685729	T	T	20685729	1	4	207	0	1	0	0	0	0	0	0	0	44	943	33	3		3	ABCB5	7	20685729	5'Flank	SNP	G	TCGA-73-4668-01A-01D-1265-08	5251857	20685729	138452934	492	162622											
DNAH11	8701	broad.mit.edu	37	chr7	21640827	21640827	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactttggtttttggaattaTaactttctaaactgctttct	5	6	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21640827	C	C	21640827	1	2	207	0	1	0	0	0	0	0	0	0	4639	1421	49	5		5	DNAH11	7	21640827	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	955098	21640827	137497836	493	162623											
DNAH11	8701	broad.mit.edu	37	chr7	21742355	21742355	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgactggggacttcgtgctAttaagtctgtcttggttgtg	13	7	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21742355	T	T	21742355	3	4	207	1	0	0	0	0	1	0	0	0	4639	449	16	5	6376	5	DNAH11	7	21742355	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	101528	21742355	137396308	494	162624											
DNAH11	8701	broad.mit.edu	37	chr7	21827034	21827034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggttgatgattttttgCaagcattaattaactatgac	8	5	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21827034	A	A	21827034	3	1	207	1	0	0	0	0	1	0	0	0	4639	711	25	3	10017	3	DNAH11	7	21827034	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	84679	21827034	137311629	495	162625											
FAM126A	84668	broad.mit.edu	37	chr7	23030552	23030552	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaataactctctattgagAtttgatagaaaatacttcca	5	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23030552	T	T	23030552	1	4	207	0	1	0	0	0	0	0	0	0	5475	348	12	5		5	FAM126A	7	23030552	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1203518	23030552	136108111	496	162626											
STK31	56164	broad.mit.edu	37	chr7	23826176	23826176	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtgattgagagagcagCcacctaccatagagcttgga	12	9	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23826176	T	T	23826176	3	4	207	1	0	0	0	0	1	0	0	0	15414	739	26	4	2398	4	STK31	7	23826176	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	795624	23826176	135312487	497	162627											
SNX10	29887	broad.mit.edu	37	chr7	26404579	26404579	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgataataatcatcatAcataatttgccttcactttg	5	7	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26404579	T	T	26404579	1	4	207	0	1	0	0	0	0	0	0	0	14995	406	14	5		5	SNX10	7	26404579	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2578403	26404579	132734084	498	162628											
CPVL	54504	broad.mit.edu	37	chr7	29103813	29103813	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgtctcacctctgggagtGacaaaaatttcacatagtaa	7	9	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29103813	C	C	29103813	4	2	207	1	0	0	0	0	0	1	0	0	3867	1294	45	4	441	4	CPVL	7	29103813	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2699234	29103813	130034850	499	162629											
BBS9	27241	broad.mit.edu	37	chr7	33313629	33313629	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcaagaaattttctagaaGttctatgaaataatgacaag	7	4	3	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33313629	C	C	33313629	1	2	207	0	1	0	0	0	0	0	0	0	1347	1044	36	4		4	BBS9	7	33313629	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4209816	33313629	125825034	500	162630											
BMPER	168667	broad.mit.edu	37	chr7	34192785	34192785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaactggaatgaaattgGtccatgcaacaagccgtgcg	11	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34192785	T	T	34192785	3	4	207	1	0	0	0	0	1	0	0	0	1474	1261	44	3	2016	3	BMPER	7	34192785	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	879156	34192785	124945878	501	162631											
NPSR1	387129	broad.mit.edu	37	chr7	34873896	34873896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggttaaaagatctgtccCttcacaccttgcactcgggg	9	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34873896	A	A	34873896	1	1	207	0	1	0	0	0	0	0	0	0	10695	696	24	2		2	NPSR1	7	34873896	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	681111	34873896	124264767	502	162632											
ANLN	54443	broad.mit.edu	37	chr7	36438966	36438966	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacgtatgcaaaaacttgcaGagcaacggcgccgttgggat	12	10	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36438966	C	C	36438966	3	2	207	1	0	0	0	0	1	0	0	0	694	943	33	4	461	4	ANLN	7	36438966	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1565070	36438966	122699697	503	162633											
VPS41	27072	broad.mit.edu	37	chr7	38768381	38768381	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaatcttcttgcagccttcaCgaagcagaatctaatgcata	7	10	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38768381	G	G	38768381	3	3	207	1	0	0	0	0	1	0	0	0	17337	536	19	4	310	4	VPS41	7	38768381	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2329415	38768381	120370282	504	162634											
HECW1	23072	broad.mit.edu	37	chr7	43532664	43532664	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagactcaaccacaactGtgcttttgtctgtttcagca	7	12	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43532664	T	T	43532664	1	4	207	0	1	0	0	0	0	0	0	0	7109	1392	48	3		3	HECW1	7	43532664	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4764283	43532664	115605999	505	162635											
TBRG4	9238	broad.mit.edu	37	chr7	45139897	45139897	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctagacctccggcggagagGcacgcagtccatgctgctgg	15	13	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45139897	A	A	45139897	1	1	207	0	1	0	0	0	0	0	0	0	15771	1218	42	4		4	TBRG4	7	45139897	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	1607233	45139897	113998766	506	162636											
C7orf57	136288	broad.mit.edu	37	chr7	48081122	48081122	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtggcaggcccggtgagCcccctcctgccctgttcagt	13	15	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48081122	A	A	48081122	1	1	207	0	1	0	0	0	0	0	0	0	2429	754	26	3		3	C7orf57	7	48081122	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2941225	48081122	111057541	507	162637											
VSTM2A	222008	broad.mit.edu	37	chr7	54636784	54636784	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctttgctttaatctaaAgtgctgacttttttccaata	7	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54636784	G	G	54636784	1	3	207	0	1	0	0	0	0	0	0	0	17356	87	3	5		5	VSTM2A	7	54636784	3'UTR	SNP	A	TCGA-73-4668-01A-01D-1265-08	6555662	54636784	104501879	508	162638											
GBAS	2631	broad.mit.edu	37	chr7	56064924	56064924	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttgctcagaatttccccAgcccagtatattacacacct	4	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56064924	C	C	56064924	1	2	207	0	1	0	0	0	0	0	0	0	6331	203	7	5		5	GBAS	7	56064924	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1428140	56064924	103073739	509	162639											
WBSCR17	64409	broad.mit.edu	37	chr7	70880763	70880763	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccagaattactaacatgcGattttttttgagatctttga	7	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70880763	A	A	70880763	1	1	207	0	1	0	0	0	0	0	0	0	17391	1073	37	4		4	WBSCR17	7	70880763	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	14815839	70880763	88257900	510	162640											
PCLO	27445	broad.mit.edu	37	chr7	82584907	82584907	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccctctgcttttcttgctCctttaataattcttcttcct	2	13	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82584907	A	A	82584907	4	1	207	1	0	0	0	0	0	1	0	0	11677	864	30	3	10167	3	PCLO	7	82584907	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	11704144	82584907	76553756	511	162641											
ABCB4	5244	broad.mit.edu	37	chr7	87072909	87072909	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagtatcaaaataatagaGactttattctttaaaatgat	4	3	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87072909	T	T	87072909	1	4	207	0	1	0	0	0	0	0	0	0	43	957	33	3		3	ABCB4	7	87072909	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4488002	87072909	72065754	512	162642											
ABCB1	5243	broad.mit.edu	37	chr7	87168622	87168622	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaccatgtatcggagccGcttggtgaggatctctccag	12	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87168622	A	A	87168622	3	1	207	1	0	0	0	0	1	0	0	0	40	1086	38	4	1523	4	ABCB1	7	87168622	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	95713	87168622	71970041	513	162643											
ADAM22	53616	broad.mit.edu	37	chr7	87763675	87763675	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatttaatggctgttacacTtgcccagtcattagcccata	7	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87763675	C	C	87763675	3	2	207	1	0	0	0	0	1	0	0	0	244	1609	56	5	1159	5	ADAM22	7	87763675	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	595053	87763675	71374988	514	162644											
GTPBP10	85865	broad.mit.edu	37	chr7	89983718	89983718	+	Intron	SNP	G	T	T													cattttgtgtgtatgtgtgtGtgtgtatatatacacacaca							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89983718	T	T	89983718	1	4	207	0	1	0	0	0	0	0	0	0	6944	1392	48	3		3	GTPBP10	7	89983718	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2220043	89983718	69154945	515	162645	686	2									
GTPBP10	85865	broad.mit.edu	37	chr7	89983720	89983720	+	Intron	SNP	G	T	T													ttttgtgtgtatgtgtgtgtGtgtatatatacacacacaca							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89983720	T	T	89983720	1	4	207	0	1	0	0	0	0	0	0	0	6944	1392	48	3		3	GTPBP10	7	89983720	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2	89983720	69154943	516	162646	686	2									
CDK6	1021	broad.mit.edu	37	chr7	92300767	92300767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacatttctgcaaatatgCagccaacactccagagatcc	6	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92300767	A	A	92300767	3	1	207	1	0	0	0	0	1	0	0	0	3178	710	25	3	376	3	CDK6	7	92300767	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2317047	92300767	66837896	517	162647											
TFR2	7036	broad.mit.edu	37	chr7	100229591	100229591	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagggaaaggggtgcccacGcaaagctgcgagctgggctt	17	10	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100229591	C	C	100229591	1	2	207	0	1	0	0	0	0	0	0	0	15934	1102	38	4		4	TFR2	7	100229591	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	7928824	100229591	58909072	518	162648											
ZAN	7455	broad.mit.edu	37	chr7	100349612	100349612	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctcagaaaaacccaccatCctcacagaaaaacccaccat	2	18	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100349612	A	A	100349612	2	1	207	1	0	0	0	0	0	0	0	1	17640	845	30	3		3	ZAN	7	100349612	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	120021	100349612	58789051	519	162649											
CUX1	1523	broad.mit.edu	37	chr7	101839884	101839884	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccccctttggaatcccccAtaatgcattctgtttgccct	5	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101839884	T	T	101839884	1	4	207	0	1	0	0	0	0	0	0	0	4097	232	8	5		5	CUX1	7	101839884	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1490272	101839884	57298779	520	162650											
RELN	5649	broad.mit.edu	37	chr7	103292095	103292095	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtatttcaatatctcagagAgaatgtactcacccactgta	6	9	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103292095	C	C	103292095	1	2	207	0	1	0	0	0	0	0	0	0	13328	319	11	5		5	RELN	7	103292095	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1452211	103292095	55846568	521	162651											
ORC5L	5001	broad.mit.edu	37	chr7	103848449	103848449	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcggcccacgctcccgccGgaaaccggacccgcagcgtc	13	19	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103848449	T	T	103848449	1	4	207	0	1	0	0	0	0	0	0	0	11359	1131	39	1		1	ORC5L	7	103848449	5'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	556354	103848449	55290214	522	162652											
PIK3CG	5294	broad.mit.edu	37	chr7	106512940	106512940	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttccctgattcaacgacAtagagtacagtcctacaaat	5	11	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106512940	G	G	106512940	1	3	207	0	1	0	0	0	0	0	0	0	12011	232	8	5		5	PIK3CG	7	106512940	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2664491	106512940	52625723	523	162653											
COG5	10466	broad.mit.edu	37	chr7	107002873	107002873	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtccaggtccccctggttaTgagtgagaaagaacaatgaa	11	9	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107002873	A	A	107002873	1	1	207	0	1	0	0	0	0	0	0	0	3693	1479	51	5		5	COG5	7	107002873	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	489933	107002873	52135790	524	162654											
DUS4L	11062	broad.mit.edu	37	chr7	107216865	107216865	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaaaaggctgaagcaacAggagtttcatggattacagt	11	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107216865	T	T	107216865	2	4	207	1	0	0	0	0	0	0	0	1	4848	175	7	5		5	DUS4L	7	107216865	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	213992	107216865	51921798	525	162655											
DLD	1738	broad.mit.edu	37	chr7	107533693	107533693	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctacagggactttctgcaGtgcctctgagaacttacgca	10	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107533693	C	C	107533693	3	2	207	1	0	0	0	0	1	0	0	0	4591	1029	36	4	94	4	DLD	7	107533693	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	316828	107533693	51604970	526	162656											
LAMB4	22798	broad.mit.edu	37	chr7	107696157	107696157	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaaatcctttctatttcAgacacgttccctctgaggtc	5	12	4	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107696157	T	T	107696157	2	4	207	1	0	0	0	0	0	0	0	1	8685	175	7	5		5	LAMB4	7	107696157	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	162464	107696157	51442506	527	162657											
LAMB4	22798	broad.mit.edu	37	chr7	107718762	107718762	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagtccagtcagctgcagaCtagacaggcatgacattaag	10	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107718762	G	G	107718762	5	3	207	1	0	0	0	0	0	0	1	0	8685	579	20	4	3474	4	LAMB4	7	107718762	Splice_Site	SNP	C	TCGA-73-4668-01A-01D-1265-08	22605	107718762	51419901	528	162658											
NRCAM	4897	broad.mit.edu	37	chr7	107832198	107832198	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgctaagcacagcgctggcGgagacgctgtccagagtggt	15	11	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107832198	C	C	107832198	2	2	207	1	0	0	0	0	0	0	0	1	10739	1103	39	4		4	NRCAM	7	107832198	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	113436	107832198	51306465	529	162659											
THAP5	168451	broad.mit.edu	37	chr7	108205159	108205159	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttacttcaagaacttcttGagtttccaaagattgatgaa	7	6	2	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108205159	C	C	108205159	3	2	207	1	0	0	0	0	1	0	0	0	15970	1299	45	4	527	4	THAP5	7	108205159	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	372961	108205159	50933504	530	162660											
C7orf66	154907	broad.mit.edu	37	chr7	108524480	108524480	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaaaaagaattcccacCttacctgaaacagcattgca	5	10	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108524480	A	A	108524480	1	1	207	0	1	0	0	0	0	0	0	0	2437	696	24	2		2	C7orf66	7	108524480	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	319321	108524480	50614183	531	162661											
C7orf58	79974	broad.mit.edu	37	chr7	120767204	120767204	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attttgaggaccaaaatacaGaagaattccttttaaatgac	6	6	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120767204	T	T	120767204	4	4	207	1	0	0	0	0	0	1	0	0	2430	943	33	3	1229	3	C7orf58	7	120767204	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	12242724	120767204	38371459	532	162662											
FEZF1	389549	broad.mit.edu	37	chr7	121942957	121942957	+	Frame_Shift_Del	DEL	C	-	-													aacttctattaaatgctttgCcacactggttacatttgtga							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121942957	-	-	121942957	7	5	207	1	0	1	0	1	0	0	0	0	5882	739	26	0	470	0	FEZF1	7	121942957	Frame_Shift_Del	DEL	C	TCGA-73-4668-01A-01D-1265-08	1175753	121942957	37195706	533	162663											
CADPS2	93664	broad.mit.edu	37	chr7	121985699	121985699	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttggttttgccgaacaaAcataatataggtgtctgcca	8	8	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121985699	G	G	121985699	3	3	207	1	0	0	0	0	1	0	0	0	2597	43	2	5	361	5	CADPS2	7	121985699	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	42742	121985699	37152964	534	162664											
TSGA13	114960	broad.mit.edu	37	chr7	130370058	130370058	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggctcattgctgttgaCtgctagttggccaacccaag	10	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130370058	A	A	130370058	1	1	207	0	1	0	0	0	0	0	0	0	16744	580	20	3		3	TSGA13	7	130370058	5'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	8384359	130370058	28768605	535	162665											
MKLN1	4289	broad.mit.edu	37	chr7	131071982	131071982	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaatttaaagtctttgGtggaatgaatgaagaaaata	10	1	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131071982	C	C	131071982	3	2	207	1	0	0	0	0	1	0	0	0	9696	1261	44	4	315	4	MKLN1	7	131071982	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	701924	131071982	28066681	536	162666											
PODXL	5420	broad.mit.edu	37	chr7	131195709	131195709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggggtggccacaggatgcGtcgaagtgggttgtcggggg	21	6	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131195709	A	A	131195709	3	1	207	1	0	0	0	0	1	0	0	0	12275	1145	40	4	1124	4	PODXL	7	131195709	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	123727	131195709	27942954	537	162667											
PLXNA4	91584	broad.mit.edu	37	chr7	131815270	131815270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcatgagggttatgacttGttctagtttgtaggccagtt	12	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131815270	T	T	131815270	3	4	207	1	0	0	0	0	1	0	0	0	12217	1386	48	3	35	3	PLXNA4	7	131815270	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	619561	131815270	27323393	538	162668											
PLXNA4	91584	broad.mit.edu	37	chr7	131829850	131829850	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgggctcagggctcccgAtgtgccccctgccctccctt	13	17	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131829850	T	T	131829850	1	4	207	0	1	0	0	0	0	0	0	0	12217	348	12	5		5	PLXNA4	7	131829850	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	14580	131829850	27308813	539	162669											
PLXNA4	91584	broad.mit.edu	37	chr7	132070105	132070105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatggtgcacaagatatgCccataagcctccttattccc	6	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132070105	A	A	132070105	1	1	207	0	1	0	0	0	0	0	0	0	12217	754	26	3		3	PLXNA4	7	132070105	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	240255	132070105	27068558	540	162670											
STRA8	346673	broad.mit.edu	37	chr7	134925270	134925270	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcatactattacattacaGcttataatggcaacccctga	5	10	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134925270	A	A	134925270	5	1	207	1	0	0	0	0	0	0	1	0	15441	985	34	4	66	4	STRA8	7	134925270	Splice_Site	SNP	G	TCGA-73-4668-01A-01D-1265-08	2855165	134925270	24213393	541	162671											
PTN	5764	broad.mit.edu	37	chr7	136936161	136936161	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcagggtagaaccaaaCagaaatccttgaaagatcct	9	8	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136936161	G	G	136936161	1	3	207	0	1	0	0	0	0	0	0	0	12874	493	17	4		4	PTN	7	136936161	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2010891	136936161	22202502	542	162672											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138430117	138430117	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggatatctccagcatcaccGgtgcaggcacccttggggga	13	12	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138430117	C	C	138430117	1	2	207	0	1	0	0	0	0	0	0	0	1174	1131	39	4		4	ATP6V0A4	7	138430117	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1493956	138430117	20708546	543	162673											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138749670	138749670	+	Frame_Shift_Del	DEL	C	-	-													tgagcccgcctgaaatggcaCaactcccctcggacaggatt							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	138749670	-	-	138749670	7	5	207	1	0	1	0	1	0	0	0	0	17701	478	17	0	788	0	ZC3HAV1	7	138749670	Frame_Shift_Del	DEL	C	TCGA-73-4668-01A-01D-1265-08	319553	138749670	20388993	544	162674											
UBN2	254048	broad.mit.edu	37	chr7	138946416	138946416	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctacacttctcaggttatgCccaaagtggtacctacactc	6	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138946416	T	T	138946416	3	4	207	1	0	0	0	0	1	0	0	0	17019	739	26	4	1346	4	UBN2	7	138946416	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	196746	138946416	20192247	545	162675											
LUC7L2	51631	broad.mit.edu	37	chr7	139107013	139107013	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcggaaagataagaagcGgtcctatgagagtgctaatg	13	5	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139107013	A	A	139107013	3	1	207	1	0	0	0	0	1	0	0	0	9170	1116	39	4	1144	4	LUC7L2	7	139107013	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	160597	139107013	20031650	546	162676											
TBXAS1	6916	broad.mit.edu	37	chr7	139653162	139653162	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacacctttgttatccattAtcagatggttcccctcatca	4	12	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139653162	G	G	139653162	1	3	207	0	1	0	0	0	0	0	0	0	15786	464	16	5		5	TBXAS1	7	139653162	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	546149	139653162	19485501	547	162677											
TBXAS1	6916	broad.mit.edu	37	chr7	139717652	139717652	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtgaggcccccctgctcaGaggcaggggcaggggcaggg	20	11	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139717652	T	T	139717652	1	4	207	0	1	0	0	0	0	0	0	0	15786	957	33	3		3	TBXAS1	7	139717652	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	64490	139717652	19421011	548	162678											
BRAF	673	broad.mit.edu	37	chr7	140481323	140481323	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttttacaaaataaaagttGttaaacatatcctattatga	3	4	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481323	A	A	140481323	1	1	207	0	1	0	0	0	0	0	0	0	1505	1392	48	4		4	BRAF	7	140481323	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	763671	140481323	18657340	549	162679											
TRYX3	136541	broad.mit.edu	37	chr7	141957389	141957389	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacagaggaccatcctacaCttgaattctggaatgatgcc	10	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141957389	A	A	141957389	1	1	207	0	1	0	0	0	0	0	0	0	16729	580	20	3		3	TRYX3	7	141957389	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1476066	141957389	17181274	550	162680											
PRSS1	5644	broad.mit.edu	37	chr7	142459634	142459634	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccatcagccgcatccaGgtgagactgggagagcacaa	12	13	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142459634	A	A	142459634	2	1	207	1	0	0	0	0	0	0	0	1	12720	991	35	4		4	PRSS1	7	142459634	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	502245	142459634	16679029	551	162681											
TRPV6	55503	broad.mit.edu	37	chr7	142571146	142571146	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctctcagcttggcaggttCcttggtaggaaggggatgac	15	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142571146	T	T	142571146	1	4	207	0	1	0	0	0	0	0	0	0	16725	870	30	4		4	TRPV6	7	142571146	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	111512	142571146	16567517	552	162682											
TAS2R40	259286	broad.mit.edu	37	chr7	142919493	142919493	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctttctgaaccattccAatctctggtttgctgcctgg	8	12	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142919493	G	G	142919493	3	3	207	1	0	0	0	0	1	0	0	0	15697	130	5	5	324	5	TAS2R40	7	142919493	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	348347	142919493	16219170	553	162683											
ZNF425	155054	broad.mit.edu	37	chr7	148815166	148815166	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ataaaaaggaatttaatattCccaggccattataggaaagg	8	5	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148815166	T	T	148815166	1	4	207	0	1	0	0	0	0	0	0	0	18026	870	30	4		4	ZNF425	7	148815166	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	5895673	148815166	10323497	554	162684											
MLL3	58508	broad.mit.edu	37	chr7	151944975	151944975	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttctgtcaatatcattaAaatcaccctacctgtttgga	4	10	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151944975	G	G	151944975	1	3	207	0	1	0	0	0	0	0	0	0	9715	29	1	5		5	MLL3	7	151944975	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3129809	151944975	7193688	555	162685											
HTR5A	3361	broad.mit.edu	37	chr7	154876017	154876017	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcgtgttcgtgctctgctgGatccccttctttctcaccga	10	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154876017	T	T	154876017	3	4	207	1	0	0	0	0	1	0	0	0	7520	1183	41	3	900	3	HTR5A	7	154876017	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2931042	154876017	4262646	556	162686											
UBE3C	9690	broad.mit.edu	37	chr7	157041331	157041331	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtagcagcatctccttGtgtgtggaagtccatttgtg	12	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157041331	T	T	157041331	1	4	207	0	1	0	0	0	0	0	0	0	17007	1392	48	3		3	UBE3C	7	157041331	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2165314	157041331	2097332	557	162687											
PTPRN2	5799	broad.mit.edu	37	chr7	158007149	158007149	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcagcctctctctaatcaAggagtcaggaaagaatcaac	8	10	5	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158007149	T	T	158007149	1	4	207	0	1	0	0	0	0	0	0	0	12916	87	3	5		5	PTPRN2	7	158007149	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	965818	158007149	1131514	558	162688											
RP1L1	94137	broad.mit.edu	37	chr8	10470189	10470190	+	Missense_Mutation	DNP	GG	CT	CT													accccgtcctccggggtcctGgggcagcaggaggactctgg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	10470190	CT	CT	10470189	3	2	207	1	0	0	0	0	1	0	0	0	13644	1335	47	4	5787	4	RP1L1	8	10470189	Missense_Mutation	DNP	GG	TCGA-73-4668-01A-01D-1265-08		10470189	135893833	559	162689											
PINX1	54984	broad.mit.edu	37	chr8	10623344	10623344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttcttcagtgctgccatcCgcttggcaaagtactcctgg	10	12	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10623344	A	A	10623344	3	1	207	1	0	0	0	0	1	0	0	0	12028	652	23	1	436	1	PINX1	8	10623344	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	153155	10623344	135740678	560	162690											
SGCZ	137868	broad.mit.edu	37	chr8	14095345	14095345	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcattggtggacaatgtaCaaaactgagagcctcataat	8	7	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14095345	A	A	14095345	1	1	207	0	1	0	0	0	0	0	0	0	14317	493	17	3		3	SGCZ	8	14095345	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3472001	14095345	132268677	561	162691											
SGCZ	137868	broad.mit.edu	37	chr8	14166660	14166661	+	Intron	DNP	CT	AA	AA													ctacagaacagatgggcactCtggttttttaaaaacgaaaa							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	14166661	AA	AA	14166660	1	1	207	0	1	0	0	0	0	0	0	0	14317	928	32	3		3	SGCZ	8	14166660	Intron	DNP	CT	TCGA-73-4668-01A-01D-1265-08	71315	14166660	132197362	562	162692											
TRIM35	23087	broad.mit.edu	37	chr8	27168490	27168490	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctggtccagcgcgcgcccTcggcctcctcgcgcagcagc	13	19	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27168490	A	A	27168490	3	1	207	1	0	0	0	0	1	0	0	0	16633	1551	54	5	1242	5	TRIM35	8	27168490	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	13001830	27168490	119195532	563	162693											
SCARA5	286133	broad.mit.edu	37	chr8	27737310	27737310	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagccaactgtcactacCcagctctagatacaccagga	8	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27737310	T	T	27737310	1	4	207	0	1	0	0	0	0	0	0	0	13992	638	22	4		4	SCARA5	8	27737310	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	568820	27737310	118626712	564	162694											
KCNU1	157855	broad.mit.edu	37	chr8	36793536	36793536	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aataagaatggaagcatgccAtttttctgcccattgcttag	8	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36793536	C	C	36793536	1	2	207	0	1	0	0	0	0	0	0	0	8163	232	8	5		5	KCNU1	8	36793536	3'UTR	SNP	A	TCGA-73-4668-01A-01D-1265-08	9056226	36793536	109570486	565	162695											
ADRB3	155	broad.mit.edu	37	chr8	37821624	37821624	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catggcccagtcgtcaggttCtggagggtagagtgtcacag	15	9	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37821624	A	A	37821624	1	1	207	0	1	0	0	0	0	0	0	0	342	928	32	3		3	ADRB3	8	37821624	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	1028088	37821624	108542398	566	162696											
EIF4EBP1	1978	broad.mit.edu	37	chr8	37914836	37914836	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaatgtatgaggctcctGgagtccatccactgggggca	15	9	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37914836	T	T	37914836	1	4	207	0	1	0	0	0	0	0	0	0	5074	1363	47	2		2	EIF4EBP1	8	37914836	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	93212	37914836	108449186	567	162697											
ADAM18	8749	broad.mit.edu	37	chr8	39521276	39521276	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacaagagcttttaagtgGttaaactgtaataatatttc	7	4	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39521276	T	T	39521276	1	4	207	0	1	0	0	0	0	0	0	0	239	1276	44	3		3	ADAM18	8	39521276	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1606440	39521276	106842746	568	162698											
PLAT	5327	broad.mit.edu	37	chr8	42037728	42037728	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgtgttgtgtgatctgtAtgaactggagccgggaatga	17	4	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42037728	G	G	42037728	1	3	207	0	1	0	0	0	0	0	0	0	12116	464	16	5		5	PLAT	8	42037728	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2516452	42037728	104326294	569	162699											
IKBKB	3551	broad.mit.edu	37	chr8	42163754	42163754	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagtttgggatctaatagtAcctgggaattcagaaatacc	11	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42163754	T	T	42163754	1	4	207	0	1	0	0	0	0	0	0	0	7681	406	14	5		5	IKBKB	8	42163754	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	126026	42163754	104200268	570	162700											
POTEA	340441	broad.mit.edu	37	chr8	43159972	43159972	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaccttttcgccttcttGgcagcagggaccagttttgt	9	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43159972	T	T	43159972	1	4	207	0	1	0	0	0	0	0	0	0	12356	1363	47	2		2	POTEA	8	43159972	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	996218	43159972	103204050	571	162701											
SNTG1	54212	broad.mit.edu	37	chr8	51351206	51351206	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaggccatgccataagaGctgaactttggtgcatttca	9	9	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51351206	A	A	51351206	1	1	207	0	1	0	0	0	0	0	0	0	14988	986	34	4		4	SNTG1	8	51351206	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	8191234	51351206	95012816	572	162702											
SNTG1	54212	broad.mit.edu	37	chr8	51705153	51705153	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagataagtgtattgaaattGaaaaaaaatctagctattat	6	2	1	3	rs144613675	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51705153	T	T	51705153	1	4	207	0	1	0	0	0	0	0	0	0	14988	1305	45	3		3	SNTG1	8	51705153	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	353947	51705153	94658869	573	162703											
PXDNL	137902	broad.mit.edu	37	chr8	52359491	52359491	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcatatatgtcataagatcCctgtcaggtgtgttaaagac	9	7	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52359491	G	G	52359491	1	3	207	0	1	0	0	0	0	0	0	0	12956	638	22	4		4	PXDNL	8	52359491	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	654338	52359491	94004531	574	162704											
PXDNL	137902	broad.mit.edu	37	chr8	52384652	52384652	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaactctgaaaattttaGtaatttcttctctagataaa	4	5	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52384652	A	A	52384652	1	1	207	0	1	0	0	0	0	0	0	0	12956	1044	36	4		4	PXDNL	8	52384652	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	25161	52384652	93979370	575	162705											
XKR4	114786	broad.mit.edu	37	chr8	56362928	56362928	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgttgctgtagggccgcaGgacctctgtgtcctcgggtg	15	12	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56362928	T	T	56362928	1	4	207	0	1	0	0	0	0	0	0	0	17560	1015	35	2		2	XKR4	8	56362928	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3978276	56362928	90001094	576	162706											
CHD7	55636	broad.mit.edu	37	chr8	61767075	61767075	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatttgccttctcgttttGgcctaaggttggcaggtttt	10	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61767075	A	A	61767075	4	1	207	1	0	0	0	0	0	1	0	0	3361	1357	47	4	7051	4	CHD7	8	61767075	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	5404147	61767075	84596947	577	162707											
NKAIN3	286183	broad.mit.edu	37	chr8	63768065	63768065	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggtaaatttcccttcaGgattgtaatctggtgggtaa	10	6	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63768065	T	T	63768065	1	4	207	0	1	0	0	0	0	0	0	0	10532	1015	35	2		2	NKAIN3	8	63768065	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2000990	63768065	82595957	578	162708											
NKAIN3	286183	broad.mit.edu	37	chr8	63768840	63768841	+	Intron	DNP	CC	AA	AA													aggcttgagagccctctggaCcagattataaatgcccagag							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	63768841	AA	AA	63768840	1	1	207	0	1	0	0	0	0	0	0	0	10532	522	18	3		3	NKAIN3	8	63768840	Intron	DNP	CC	TCGA-73-4668-01A-01D-1265-08	775	63768840	82595182	579	162709											
CPA6	57094	broad.mit.edu	37	chr8	68481711	68481711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagtagccagagccacagGctaagacagggtctgtaaca	11	9	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68481711	T	T	68481711	1	4	207	0	1	0	0	0	0	0	0	0	3826	1218	42	3		3	CPA6	8	68481711	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4712871	68481711	77882311	580	162710											
PREX2	80243	broad.mit.edu	37	chr8	69015265	69015265	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttctgctttagaataattCcataattgggcttattttgg	7	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69015265	A	A	69015265	1	1	207	0	1	0	0	0	0	0	0	0	12583	870	30	3		3	PREX2	8	69015265	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	533554	69015265	77348757	581	162711											
PREX2	80243	broad.mit.edu	37	chr8	69033339	69033339	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcaataatcaatttaaaaCccactaaaaccaaaagtttg	3	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69033339	T	T	69033339	1	4	207	0	1	0	0	0	0	0	0	0	12583	522	18	4		4	PREX2	8	69033339	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	18074	69033339	77330683	582	162712											
ZFHX4	79776	broad.mit.edu	37	chr8	77617618	77617618	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagccactcatcgtctgagtCtagcaagatgtcagagagca	10	11	4	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77617618	A	A	77617618	3	1	207	1	0	0	0	0	1	0	0	0	17761	913	32	3	1297	3	ZFHX4	8	77617618	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	8584279	77617618	68746404	583	162713											
ATP6V0D2	245972	broad.mit.edu	37	chr8	87153747	87153747	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atattgaattgctacgcaatAaactatacaaggtaatggtt	7	5	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87153747	T	T	87153747	4	4	207	1	0	0	0	0	0	1	0	0	1178	363	13	5	564	5	ATP6V0D2	8	87153747	Nonsense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	9536129	87153747	59210275	584	162714											
CNGB3	54714	broad.mit.edu	37	chr8	87666264	87666264	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttgtagaagtcctgtaGtgtttccttagctcatttga	8	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87666264	T	T	87666264	3	4	207	1	0	0	0	0	1	0	0	0	3633	1020	36	3	1598	3	CNGB3	8	87666264	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	512517	87666264	58697758	585	162715											
DCAF4L2	138009	broad.mit.edu	37	chr8	88886241	88886241	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctgaggggaagttctgtCccgggagtaagaggaagtac	15	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88886241	A	A	88886241	1	1	207	0	1	0	0	0	0	0	0	0	4305	870	30	3		3	DCAF4L2	8	88886241	5'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	1219977	88886241	57477781	586	162716											
MMP16	4325	broad.mit.edu	37	chr8	89180257	89180257	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtataagctaacttagtaCaggttttgatcgattcagtt	8	5	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89180257	A	A	89180257	1	1	207	0	1	0	0	0	0	0	0	0	9748	493	17	3		3	MMP16	8	89180257	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	294016	89180257	57183765	587	162717											
RUNX1T1	862	broad.mit.edu	37	chr8	93004034	93004034	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccgttatttggactgtacCgctggcctgggctaatagtg	13	9	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93004034	A	A	93004034	3	1	207	1	0	0	0	0	1	0	0	0	13858	652	23	1	1014	1	RUNX1T1	8	93004034	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3823777	93004034	53359988	588	162718											
GDF6	392255	broad.mit.edu	37	chr8	97156922	97156922	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgggcggggtggagcCggggtccatggagttcatca	19	9	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97156922	T	T	97156922	3	4	207	1	0	0	0	0	1	0	0	0	6381	652	23	4	134	4	GDF6	8	97156922	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4152888	97156922	49207100	589	162719											
OSR2	116039	broad.mit.edu	37	chr8	99961558	99961558	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttggcggtggctgccacGcaagaggatccgcctaagat	13	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99961558	T	T	99961558	2	4	207	1	0	0	0	0	0	0	0	1	11388	1074	38	3		3	OSR2	8	99961558	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	2804636	99961558	46402464	590	162720											
ODF1	4956	broad.mit.edu	37	chr8	103563926	103563926	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagtgccatttcccaaagGtactcacagaacaatcaggt	9	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103563926	T	T	103563926	1	4	207	0	1	0	0	0	0	0	0	0	10921	1276	44	3		3	ODF1	8	103563926	5'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	3602368	103563926	42800096	591	162721											
CSMD3	114788	broad.mit.edu	37	chr8	113395820	113395820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcttccaagtcttggagCattgttgtctcccccatcat	7	12	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113395820	A	A	113395820	3	1	207	1	0	0	0	0	1	0	0	0	3980	710	25	3	5256	3	CSMD3	8	113395820	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	9831894	113395820	32968202	592	162722											
CSMD3	114788	broad.mit.edu	37	chr8	113697760	113697760	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaaggttccaagaattGgggattctggagagtcacca	12	7	2	2	rs150314286	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113697760	A	A	113697760	3	1	207	1	0	0	0	0	1	0	0	0	3980	1348	47	4	8994	4	CSMD3	8	113697760	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	301940	113697760	32666262	593	162723											
CSMD3	114788	broad.mit.edu	37	chr8	113812608	113812608	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactttctttgctagaaaaaAaagtcagataaacatagagg	7	5	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113812608	C	C	113812608	1	2	207	0	1	0	0	0	0	0	0	0	3980	29	1	5		5	CSMD3	8	113812608	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	114848	113812608	32551414	594	162724											
CSMD3	114788	broad.mit.edu	37	chr8	114031359	114031359	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaacaaaatgcagtctgaGccagtttttgttgctgataa	9	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114031359	T	T	114031359	3	4	207	1	0	0	0	0	1	0	0	0	3980	971	34	3	10420	3	CSMD3	8	114031359	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	218751	114031359	32332663	595	162725											
CSMD3	114788	broad.mit.edu	37	chr8	114290752	114290752	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctcaaatgttgattcttcTttcctacttgaaaaattttg	5	7	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114290752	C	C	114290752	1	2	207	0	1	0	0	0	0	0	0	0	3980	1624	56	5		5	CSMD3	8	114290752	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	259393	114290752	32073270	596	162726											
TRPS1	7227	broad.mit.edu	37	chr8	116616109	116616109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatgcctcacctgtagtgtCgggaaatctcttcttccact	7	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116616109	A	A	116616109	3	1	207	1	0	0	0	0	1	0	0	0	16718	884	31	3	1813	3	TRPS1	8	116616109	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2325357	116616109	29747913	597	162727											
RAD21	5885	broad.mit.edu	37	chr8	117874215	117874216	+	Intron	DNP	CC	AA	AA													taagcttaaatatctagctaCccataaattatctagggatc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	117874216	AA	AA	117874215	1	1	207	0	1	0	0	0	0	0	0	0	13089	522	18	3		3	RAD21	8	117874215	Intron	DNP	CC	TCGA-73-4668-01A-01D-1265-08	1258106	117874215	28489807	598	162728											
COL14A1	7373	broad.mit.edu	37	chr8	121267478	121267478	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgtttctatttcattccaGtgttcttgggtgttaccaat	7	7	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121267478	C	C	121267478	5	2	207	1	0	0	0	0	0	0	1	0	3703	1043	36	4	2838	4	COL14A1	8	121267478	Splice_Site	SNP	G	TCGA-73-4668-01A-01D-1265-08	3393263	121267478	25096544	599	162729											
SNTB1	6641	broad.mit.edu	37	chr8	121554375	121554375	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaataaaaatatagtcaTtgttcatgaaaatattctgt	4	4	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121554375	A	A	121554375	1	1	207	0	1	0	0	0	0	0	0	0	14986	1508	52	5		5	SNTB1	8	121554375	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	286897	121554375	24809647	600	162730											
ATAD2	29028	broad.mit.edu	37	chr8	124384103	124384103	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgcatacataaaaataaaTagaaacatttgaaataatag	4	3	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124384103	G	G	124384103	1	3	207	0	1	0	0	0	0	0	0	0	1075	1421	49	5		5	ATAD2	8	124384103	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2829728	124384103	21979919	601	162731											
FAM91A1	157769	broad.mit.edu	37	chr8	124811672	124811672	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagttgcagttaacatttatGtgaagggatttgctgtttat	10	3	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124811672	C	C	124811672	1	2	207	0	1	0	0	0	0	0	0	0	5708	1392	48	4		4	FAM91A1	8	124811672	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	427569	124811672	21552350	602	162732											
FER1L6	654463	broad.mit.edu	37	chr8	125034045	125034045	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggctacgcaggcactcctAgtttagagaagagattttta	11	7	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125034045	G	G	125034045	1	3	207	0	1	0	0	0	0	0	0	0	5872	435	15	5		5	FER1L6	8	125034045	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	222373	125034045	21329977	603	162733											
MTSS1	9788	broad.mit.edu	37	chr8	125579453	125579453	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattcatgaaatgttattatCatgagtgattcccttcatcg	6	8	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125579453	A	A	125579453	1	1	207	0	1	0	0	0	0	0	0	0	10056	841	29	3		3	MTSS1	8	125579453	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	545408	125579453	20784569	604	162734											
TMEM71	137835	broad.mit.edu	37	chr8	133769389	133769389	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgacctcgtgatccgcctGcctcggcctcccaaagtgct	9	18	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133769389	A	A	133769389	1	1	207	0	1	0	0	0	0	0	0	0	16323	1334	46	4		4	TMEM71	8	133769389	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	8189936	133769389	12594633	605	162735											
TG	7038	broad.mit.edu	37	chr8	134145975	134145975	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgctgtgctcgctgcatgaGacctgtgctgcgcgcgcatt	13	13	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134145975	T	T	134145975	1	4	207	0	1	0	0	0	0	0	0	0	15936	957	33	3		3	TG	8	134145975	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	376586	134145975	12218047	606	162736											
ZFAT	57623	broad.mit.edu	37	chr8	135614385	135614385	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgagtgcattcacgcccTggagggcaaactcctcttcc	9	15	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135614385	A	A	135614385	3	1	207	1	0	0	0	0	1	0	0	0	17758	1580	55	5	2198	5	ZFAT	8	135614385	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	1468410	135614385	10749637	607	162737											
COL22A1	169044	broad.mit.edu	37	chr8	139631586	139631586	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagccgtctggaggagaagGacttctaggaccccacggtt	13	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139631586	T	T	139631586	1	4	207	0	1	0	0	0	0	0	0	0	3713	1189	41	3		3	COL22A1	8	139631586	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4017201	139631586	6732436	608	162738											
COL22A1	169044	broad.mit.edu	37	chr8	139736919	139736919	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggcaaaccctgaaagGggaccacatggaccctgtta	10	13	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139736919	C	C	139736919	1	2	207	0	1	0	0	0	0	0	0	0	3713	1247	43	4		4	COL22A1	8	139736919	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	105333	139736919	6627103	609	162739											
COL22A1	169044	broad.mit.edu	37	chr8	139809177	139809177	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaatggcaacatcatccCgagatttgaaaggattagat	9	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139809177	G	G	139809177	1	3	207	0	1	0	0	0	0	0	0	0	3713	667	23	4		4	COL22A1	8	139809177	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	72258	139809177	6554845	610	162740											
EIF2C2	27161	broad.mit.edu	37	chr8	141549520	141549520	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttctagcttgatacaggCctcacggatggccagcaact	9	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141549520	T	T	141549520	3	4	207	1	0	0	0	0	1	0	0	0	5046	739	26	4	527	4	EIF2C2	8	141549520	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1740343	141549520	4814502	611	162741											
TSTA3	7264	broad.mit.edu	37	chr8	144695114	144695114	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcgtagttgtcagtgaacCaagcacaggtctccttcacc	9	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144695114	T	T	144695114	4	4	207	1	0	0	0	0	0	1	0	0	16799	595	21	4	37	4	TSTA3	8	144695114	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3145594	144695114	1668908	612	162742											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18662191	18662191	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attaaacatcaatagtgttgCtgtccagtgttcattactaa	6	7	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18662191	T	T	18662191	1	4	207	0	1	0	0	0	0	0	0	0	274	812	28	4		4	ADAMTSL1	9	18662191	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08		18662191	122551240	613	162743											
SLC24A2	25769	broad.mit.edu	37	chr9	19785835	19785836	+	Intron	DNP	CC	AT	AT													aatctgctatccacaagagcCccaaacaccatcacatcaaa							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	19785836	AT	AT	19785835	1	1	207	0	1	0	0	0	0	0	0	0	14580	638	22	2		2	SLC24A2	9	19785835	Intron	DNP	CC	TCGA-73-4668-01A-01D-1265-08	1123644	19785835	121427596	614	162744											
LINGO2	158038	broad.mit.edu	37	chr9	27948880	27948881	+	Missense_Mutation	DNP	CC	AA	AA													tcatgttgaacctcctgggtCcagctacctccccttccaca							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	27948881	AA	AA	27948880	3	1	207	1	0	0	0	0	1	0	0	0	8888	855	30	3	34	3	LINGO2	9	27948880	Missense_Mutation	DNP	CC	TCGA-73-4668-01A-01D-1265-08	8163045	27948880	113264551	615	162745											
DNAI1	27019	broad.mit.edu	37	chr9	34500874	34500874	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaatgcagagcccctgAgtgccctctacatcccaaac	7	16	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34500874	T	T	34500874	1	4	207	0	1	0	0	0	0	0	0	0	4649	319	11	5		5	DNAI1	9	34500874	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	6551994	34500874	106712557	616	162746											
CNTFR	1271	broad.mit.edu	37	chr9	34552969	34552969	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaagggctctgggggcaGtgaggacttccctgaggaga	17	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34552969	T	T	34552969	1	4	207	0	1	0	0	0	0	0	0	0	3670	1044	36	3		3	CNTFR	9	34552969	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	52095	34552969	106660462	617	162747											
TLN1	7094	broad.mit.edu	37	chr9	35704836	35704836	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagccaagggaaagacagaTggattttacaaggggcactc	13	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35704836	C	C	35704836	1	2	207	0	1	0	0	0	0	0	0	0	16070	1479	51	5		5	TLN1	9	35704836	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1151867	35704836	105508595	618	162748											
RNF38	152006	broad.mit.edu	37	chr9	36356463	36356463	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgctgaactgaacatgccTgaagcatctgtaagagaaac	10	8	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36356463	A	A	36356463	3	1	207	1	0	0	0	0	1	0	0	0	13601	1580	55	5	829	5	RNF38	9	36356463	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	651627	36356463	104856968	619	162749											
ZNF658	26149	broad.mit.edu	37	chr9	40772696	40772696	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattatcagcaaacgttttcCcacattcattacactcatag	3	11	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40772696	A	A	40772696	3	1	207	1	0	0	0	0	1	0	0	0	18196	623	22	2	604	2	ZNF658	9	40772696	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4416233	40772696	100440735	620	162750											
ZNF658	26149	broad.mit.edu	37	chr9	40774117	40774117	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggattttctgcatttcccAtgttcatcagaaaggtagaa	8	7	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40774117	T	T	40774117	3	4	207	1	0	0	0	0	1	0	0	0	18196	214	8	5	2025	5	ZNF658	9	40774117	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	1421	40774117	100439314	621	162751											
C9orf135	138255	broad.mit.edu	37	chr9	72472976	72472976	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggggcaaaggtatgacagGgtgagccaaggtcaacaaaa	14	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72472976	T	T	72472976	1	4	207	0	1	0	0	0	0	0	0	0	2484	1247	43	2		2	C9orf135	9	72472976	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	31698859	72472976	68740455	622	162752											
TRPM6	140803	broad.mit.edu	37	chr9	77415139	77415139	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttatacaagactaacattAaactccataagacaagtaaa	3	7	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77415139	G	G	77415139	1	3	207	0	1	0	0	0	0	0	0	0	16715	377	13	5		5	TRPM6	9	77415139	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	4942163	77415139	63798292	623	162753											
OSTF1	26578	broad.mit.edu	37	chr9	77749369	77749369	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcttgttgtctttagtacaGagcaactcatgggcatgtga	11	7	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77749369	T	T	77749369	1	4	207	0	1	0	0	0	0	0	0	0	11391	957	33	3		3	OSTF1	9	77749369	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	334230	77749369	63464062	624	162754											
VPS13A	23230	broad.mit.edu	37	chr9	79820312	79820312	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaaatttatttacttataGtgccttcttctagtaagtta	5	5	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79820312	C	C	79820312	3	2	207	1	0	0	0	0	1	0	0	0	17316	1029	36	4	285	4	VPS13A	9	79820312	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2070943	79820312	61393119	625	162755											
FLJ46321	389763	broad.mit.edu	37	chr9	84605842	84605842	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagtccctgaaagatgctGctccctctgtgtcccctttg	11	13	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84605842	A	A	84605842	3	1	207	1	0	0	0	0	1	0	0	0	5990	1319	46	4	471	4	FLJ46321	9	84605842	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	4785530	84605842	56607589	626	162756											
IARS	3376	broad.mit.edu	37	chr9	94984884	94984884	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcttcatacagaagaccTtggtgggtgagtccattctg	12	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94984884	A	A	94984884	3	1	207	1	0	0	0	0	1	0	0	0	7543	1606	56	5	172	5	IARS	9	94984884	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	10379042	94984884	46228547	627	162757											
ZNF169	169841	broad.mit.edu	37	chr9	97063626	97063628	+	In_Frame_Del	DEL	CAG	-	-													ggaggaccaagtctggtcatCagctcctaccccaagaggtc					rs12350212	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	97063628	-	-	97063626	7	5	207	1	0	1	0	1	0	0	0	0	17868	827	29	0	1800	0	ZNF169	9	97063626	In_Frame_Del	DEL	CAG	TCGA-73-4668-01A-01D-1265-08	2078742	97063626	44149805	628	162758											
KIAA0368	23392	broad.mit.edu	37	chr9	114178639	114178639	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcgatgagaagcctaagtTtaaaaagtccaaaacagaca	7	7	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114178639	A	A	114178639	1	1	207	0	1	0	0	0	0	0	0	0	8241	1856	64	5		5	KIAA0368	9	114178639	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	17115013	114178639	27034792	629	162759											
KIAA1958	158405	broad.mit.edu	37	chr9	115421828	115421828	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaggaggagatgtggcagGcagggtgtctgggggatgac	21	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115421828	A	A	115421828	3	1	207	1	0	0	0	0	1	0	0	0	8334	1203	42	4	1640	4	KIAA1958	9	115421828	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1243189	115421828	25791603	630	162760											
DFNB31	25861	broad.mit.edu	37	chr9	117188456	117188456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctttcagaaatggccctgGggtctggagattggagcgag	17	7	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117188456	T	T	117188456	1	4	207	0	1	0	0	0	0	0	0	0	4495	1247	43	2		2	DFNB31	9	117188456	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1766628	117188456	24024975	631	162761											
ASTN2	23245	broad.mit.edu	37	chr9	119414180	119414180	+	Intron	DEL	G	-	-													aagaagctggtatccattgaGgaagtaaaaagatgatagag							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	119414180	-	-	119414180	6	5	207	0	1	1	0	1	0	0	0	0	1069	1015	35	0		0	ASTN2	9	119414180	Intron	DEL	G	TCGA-73-4668-01A-01D-1265-08	2225724	119414180	21799251	632	162762											
FBXW2	26190	broad.mit.edu	37	chr9	123526816	123526816	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccggcacccaaagtcagtCagcggtggtggctcatggtg	14	13	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123526816	G	G	123526816	1	3	207	0	1	0	0	0	0	0	0	0	5823	841	29	4		4	FBXW2	9	123526816	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	4112636	123526816	17686615	633	162763											
LRSAM1	90678	broad.mit.edu	37	chr9	130221422	130221422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcactcaagcctggaatGttctggccgggctccagcca	11	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130221422	T	T	130221422	1	4	207	0	1	0	0	0	0	0	0	0	9130	1392	48	3		3	LRSAM1	9	130221422	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6694606	130221422	10992009	634	162764											
PRDM12	59335	broad.mit.edu	37	chr9	133553777	133553777	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcttcccgggacagctcAgtggaaatgggactgtgtgg	16	9	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133553777	T	T	133553777	1	4	207	0	1	0	0	0	0	0	0	0	12559	203	7	5		5	PRDM12	9	133553777	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3332355	133553777	7659654	635	162765											
GFI1B	8328	broad.mit.edu	37	chr9	135866464	135866464	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggctcccagctcctggcCagcctgccctgcggtcctgt	12	19	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135866464	T	T	135866464	1	4	207	0	1	0	0	0	0	0	0	0	6404	609	21	4		4	GFI1B	9	135866464	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	2312687	135866464	5346967	636	162766											
CEL	1056	broad.mit.edu	37	chr9	135940281	135940281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcggggaggggagcgcccActgccgttgcccagcctggg	19	13	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135940281	T	T	135940281	1	4	207	0	1	0	0	0	0	0	0	0	3239	174	6	5		5	CEL	9	135940281	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	73817	135940281	5273150	637	162767											
ADAMTS13	11093	broad.mit.edu	37	chr9	136282720	136282720	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctgcgcagcgctccgccCgggccccctcaagcctcacc	11	21	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136282720	T	T	136282720	1	4	207	0	1	0	0	0	0	0	0	0	258	667	23	4		4	ADAMTS13	9	136282720	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	342439	136282720	4930711	638	162768											
FBXO18	84893	broad.mit.edu	37	chr10	5950825	5950825	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaggcgatctgcccgcctCattaatctgctttctaatgg	8	13	5	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5950825	T	T	5950825	1	4	207	0	1	0	0	0	0	0	0	0	5788	841	29	4		4	FBXO18	10	5950825	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08		5950825	129583922	639	162769											
ITGA8	8516	broad.mit.edu	37	chr10	15713616	15713616	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcaccttgctgagaatccCcagtaaactccccagcagca	6	16	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15713616	T	T	15713616	3	4	207	1	0	0	0	0	1	0	0	0	7952	623	22	4	2450	4	ITGA8	10	15713616	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	9762791	15713616	119821131	640	162770											
ITGA8	8516	broad.mit.edu	37	chr10	15760627	15760627	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaactgatttctctagAgacccacatagcccacaata	5	11	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15760627	C	C	15760627	1	2	207	0	1	0	0	0	0	0	0	0	7952	319	11	5		5	ITGA8	10	15760627	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	47011	15760627	119774120	641	162771											
TRDMT1	1787	broad.mit.edu	37	chr10	17199437	17199437	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaatagatctttaaaaccTaccctttggtaaagcacacg	5	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17199437	C	C	17199437	1	2	207	0	1	0	0	0	0	0	0	0	16591	1537	53	5		5	TRDMT1	10	17199437	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1438810	17199437	118335310	642	162772											
SLC39A12	221074	broad.mit.edu	37	chr10	18266952	18266952	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatcaggactattctaatttCtcttcatccatggaaaaaga	6	8	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18266952	A	A	18266952	3	1	207	1	0	0	0	0	1	0	0	0	14729	912	32	3	887	3	SLC39A12	10	18266952	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1067515	18266952	117267795	643	162773											
NEBL	10529	broad.mit.edu	37	chr10	21185789	21185789	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtgactgtgttttaaaaGgtgatttcagggtttccccc	10	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21185789	A	A	21185789	1	1	207	0	1	0	0	0	0	0	0	0	10398	1015	35	4		4	NEBL	10	21185789	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2918837	21185789	114348958	644	162774											
ARMC3	219681	broad.mit.edu	37	chr10	23247946	23247946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggcatgagccaccacacCcggcctattattattattaa	6	12	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23247946	A	A	23247946	1	1	207	0	1	0	0	0	0	0	0	0	956	638	22	2		2	ARMC3	10	23247946	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2062157	23247946	112286801	645	162775											
GPR158	57512	broad.mit.edu	37	chr10	25684794	25684794	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgcgagcctttataccatGagataagccatgatcaacta	7	10	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25684794	T	T	25684794	1	4	207	0	1	0	0	0	0	0	0	0	6728	1305	45	3		3	GPR158	10	25684794	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2436848	25684794	109849953	646	162776											
GAD2	2572	broad.mit.edu	37	chr10	26589643	26589643	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctaaaaactaaagacgctgCttgctgttgggttctttgac	10	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26589643	G	G	26589643	1	3	207	0	1	0	0	0	0	0	0	0	6240	812	28	4		4	GAD2	10	26589643	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	904849	26589643	108945104	647	162777											
MKX	283078	broad.mit.edu	37	chr10	27964149	27964149	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atccattggatctgaaaagcAacaagctcttaaaactgctg	7	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27964149	T	T	27964149	1	4	207	0	1	0	0	0	0	0	0	0	9703	145	5	5		5	MKX	10	27964149	3'UTR	SNP	A	TCGA-73-4668-01A-01D-1265-08	1374506	27964149	107570598	648	162778											
LYZL1	84569	broad.mit.edu	37	chr10	29578149	29578149	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggggcaggcaccaggaatCtgccttttcagtaagaccta	11	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29578149	A	A	29578149	3	1	207	1	0	0	0	0	1	0	0	0	9219	912	32	3	105	3	LYZL1	10	29578149	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1614000	29578149	105956598	649	162779											
KIF5B	3799	broad.mit.edu	37	chr10	32337440	32337440	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacacttgctcttgagatgTgcttgactggaacacccgat	9	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32337440	C	C	32337440	3	2	207	1	0	0	0	0	1	0	0	0	8376	1696	59	5	2821	5	KIF5B	10	32337440	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	2759291	32337440	103197307	650	162780											
ANKRD30A	91074	broad.mit.edu	37	chr10	37438556	37438556	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catacttacttatgattgatGataaatctcttttgcttttt	4	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37438556	T	T	37438556	1	4	207	0	1	0	0	0	0	0	0	0	658	1305	45	3		3	ANKRD30A	10	37438556	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5101116	37438556	98096191	651	162781											
RET	5979	broad.mit.edu	37	chr10	43609932	43609932	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacccccacccacagatccActgtgcgacgagctgtgccg	9	19	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43609932	G	G	43609932	2	3	207	1	0	0	0	0	0	0	0	1	13343	146	6	5		5	RET	10	43609932	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	6171376	43609932	91924815	652	162782											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43651103	43651103	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcactcgccatcctgaagAaaagccagttagaaaagaca	7	11	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43651103	G	G	43651103	3	3	207	1	0	0	0	0	1	0	0	0	3973	246	9	5	508	5	CSGALNACT2	10	43651103	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	41171	43651103	91883644	653	162783											
C10orf128	170371	broad.mit.edu	37	chr10	50373876	50373876	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgggcattaggaagggggtCgtgtgacaagaggtgcagag	19	6	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50373876	T	T	50373876	1	4	207	0	1	0	0	0	0	0	0	0	1603	899	31	4		4	C10orf128	10	50373876	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	6722773	50373876	85160871	654	162784											
C10orf128	170371	broad.mit.edu	37	chr10	50396414	50396414	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttggctcctggctcctgGctgctggcagcgcaggcaca	13	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50396414	T	T	50396414	1	4	207	0	1	0	0	0	0	0	0	0	1603	1218	42	3		3	C10orf128	10	50396414	5'Flank	SNP	G	TCGA-73-4668-01A-01D-1265-08	22538	50396414	85138333	655	162785											
CHAT	1103	broad.mit.edu	37	chr10	50824643	50824643	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaaaactcccagcagtgagGagtctgtgagtgacttttgg	12	8	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50824643	C	C	50824643	3	2	207	1	0	0	0	0	1	0	0	0	3344	1175	41	4	432	4	CHAT	10	50824643	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	428229	50824643	84710104	656	162786											
OGDHL	55753	broad.mit.edu	37	chr10	50943526	50943526	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagccatagaccctgcctttTggccctggcaccacttccaa	7	16	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50943526	A	A	50943526	1	1	207	0	1	0	0	0	0	0	0	0	10935	1827	63	5		5	OGDHL	10	50943526	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	118883	50943526	84591221	657	162787											
JMJD1C	221037	broad.mit.edu	37	chr10	64973792	64973792	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggatctctgtaaactGtaaaatgctcatttttatca	7	7	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64973792	A	A	64973792	3	1	207	1	0	0	0	0	1	0	0	0	8020	1377	48	4	5563	4	JMJD1C	10	64973792	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	14030266	64973792	70560955	658	162788											
SLC29A3	55315	broad.mit.edu	37	chr10	73111580	73111580	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcagctgaccaggttcAtccacccaggagtcatggga	13	13	2	1	rs147292817	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73111580	G	G	73111580	1	3	207	0	1	0	0	0	0	0	0	0	14650	232	8	5		5	SLC29A3	10	73111580	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	8137788	73111580	62423167	659	162789											
SPOCK2	9806	broad.mit.edu	37	chr10	73826772	73826772	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtacttgtccaggttgatGgcggccagctccgtctggtc	13	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73826772	A	A	73826772	2	1	207	1	0	0	0	0	0	0	0	1	15198	1335	47	4		4	SPOCK2	10	73826772	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	715192	73826772	61707975	660	162790											
NRG3	10718	broad.mit.edu	37	chr10	84718748	84718748	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagctgaaagtgccacaaAatggtaaaagctacagtctc	9	9	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84718748	T	T	84718748	3	4	207	1	0	0	0	0	1	0	0	0	10744	14	1	5	1391	5	NRG3	10	84718748	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	10891976	84718748	50815999	661	162791											
NRG3	10718	broad.mit.edu	37	chr10	84745402	84745402	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattctatgctttgctcaaCaggaaagagaggaaatcaaa	9	7	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84745402	A	A	84745402	1	1	207	0	1	0	0	0	0	0	0	0	10744	493	17	3		3	NRG3	10	84745402	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	26654	84745402	50789345	662	162792											
CDHR1	92211	broad.mit.edu	37	chr10	85971993	85971993	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctgggctagcctggacGctgaggccactgccaggtac	14	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85971993	T	T	85971993	3	4	207	1	0	0	0	0	1	0	0	0	3148	1087	38	3	1670	3	CDHR1	10	85971993	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1226591	85971993	49562754	663	162793											
LIPK	643414	broad.mit.edu	37	chr10	90487827	90487827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtaccaggatgagatcaaCaagcatatagagatggagaa	11	5	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90487827	A	A	90487827	1	1	207	0	1	0	0	0	0	0	0	0	8900	493	17	3		3	LIPK	10	90487827	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4515834	90487827	45046920	664	162794											
BTAF1	9044	broad.mit.edu	37	chr10	93778686	93778686	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcccctaagctctcagctttGaaacaagtatgtatgtcttt	7	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93778686	C	C	93778686	3	2	207	1	0	0	0	0	1	0	0	0	1545	1281	45	4	4991	4	BTAF1	10	93778686	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3290859	93778686	41756061	665	162795											
SLIT1	6585	broad.mit.edu	37	chr10	98808755	98808755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatctgcccgatgcgcttGttggcgaggcgccggggact	16	11	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98808755	T	T	98808755	3	4	207	1	0	0	0	0	1	0	0	0	14853	1368	48	3	3278	3	SLIT1	10	98808755	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	5030069	98808755	36725992	666	162796											
DNMBP	23268	broad.mit.edu	37	chr10	101716089	101716089	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctcgggggccctcctGcggtgtcctcgtcctgataa	13	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101716089	A	A	101716089	3	1	207	1	0	0	0	0	1	0	0	0	4714	1319	46	4	3647	4	DNMBP	10	101716089	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2907334	101716089	33818658	667	162797											
TLX1	3195	broad.mit.edu	37	chr10	102896704	102896704	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtgggaccccaggccCactcaggggtcactgaggcc	14	16	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102896704	A	A	102896704	1	1	207	0	1	0	0	0	0	0	0	0	16082	609	21	2		2	TLX1	10	102896704	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	1180615	102896704	32638043	668	162798											
CCDC147	159686	broad.mit.edu	37	chr10	106118015	106118015	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcatatggaggtgtttcAttcagaggtaatagcagtaa	11	5	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106118015	G	G	106118015	1	3	207	0	1	0	0	0	0	0	0	0	2807	232	8	5		5	CCDC147	10	106118015	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3221311	106118015	29416732	669	162799											
SORCS3	22986	broad.mit.edu	37	chr10	106937735	106937735	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgccagaaagcaagatacAgaggaaaatttaataacctg	8	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106937735	T	T	106937735	1	4	207	0	1	0	0	0	0	0	0	0	15046	203	7	5		5	SORCS3	10	106937735	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	819720	106937735	28597012	670	162800											
NRAP	4892	broad.mit.edu	37	chr10	115393013	115393013	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagaactttagggacccatAgctctttcccccttagaccc	7	14	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115393013	T	T	115393013	1	4	207	0	1	0	0	0	0	0	0	0	10733	435	15	5		5	NRAP	10	115393013	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	8455278	115393013	20141734	671	162801											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118220661	118220661	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatttttagaggcatttaccCtgtttttatttatttcaggt	7	5	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118220661	T	T	118220661	1	4	207	0	1	0	0	0	0	0	0	0	12247	696	24	4		4	PNLIPRP3	10	118220661	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2827648	118220661	17314086	672	162802											
C10orf82	143379	broad.mit.edu	37	chr10	118427679	118427679	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagactggtccagttggctgCacagacacagacagtgggtc	13	10	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118427679	A	A	118427679	1	1	207	0	1	0	0	0	0	0	0	0	1631	725	25	3		3	C10orf82	10	118427679	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	207018	118427679	17107068	673	162803											
KCNK18	338567	broad.mit.edu	37	chr10	118969235	118969235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaaaccggaccccaagCccgcagatgaagctgtccct	9	14	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969235	A	A	118969235	3	1	207	1	0	0	0	0	1	0	0	0	8135	739	26	3	590	3	KCNK18	10	118969235	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	541556	118969235	16565512	674	162804											
SLC18A2	6571	broad.mit.edu	37	chr10	119014744	119014744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttctagtacagggagagGgcatgtgtcccaggggtggt	18	6	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119014744	T	T	119014744	1	4	207	0	1	0	0	0	0	0	0	0	14539	1247	43	2		2	SLC18A2	10	119014744	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	45509	119014744	16520003	675	162805											
FGFR2	2263	broad.mit.edu	37	chr10	123263528	123263528	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaagtcagccagagcccAgccagagtatcgaatcttag	11	11	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123263528	G	G	123263528	1	3	207	0	1	0	0	0	0	0	0	0	5923	203	7	5		5	FGFR2	10	123263528	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	4248784	123263528	12271219	676	162806											
C10orf120	399814	broad.mit.edu	37	chr10	124457454	124457454	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgttccggtttctttgcgGggaggaatgatttgcgatca	13	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124457454	T	T	124457454	3	4	207	1	0	0	0	0	1	0	0	0	1601	1232	43	2	208	2	C10orf120	10	124457454	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1193926	124457454	11077293	677	162807											
VENTX	27287	broad.mit.edu	37	chr10	135053656	135053656	+	Missense_Mutation	SNP	T	A	A													cttctggggtctctgccaagTggcacaagaggccctggcat							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135053656	A	A	135053656	3	1	207	1	0	0	0	0	1	0	0	0	17280	1696	59	5	633	5	VENTX	10	135053656	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	10596202	135053656	481091	678	162808	687	2									
VENTX	27287	broad.mit.edu	37	chr10	135053658	135053658	+	Missense_Mutation	SNP	G	T	T													tctggggtctctgccaagtgGcacaagaggccctggcatct							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135053658	T	T	135053658	3	4	207	1	0	0	0	0	1	0	0	0	17280	1203	42	3	635	3	VENTX	10	135053658	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2	135053658	481089	679	162809	687	2									
CYP2E1	1571	broad.mit.edu	37	chr10	135345697	135345697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagccgacatcctcttccGcaagcattttgactacaatg	6	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135345697	T	T	135345697	3	4	207	1	0	0	0	0	1	0	0	0	4203	1087	38	3	571	3	CYP2E1	10	135345697	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	292039	135345697	189050	680	162810											
MUC2	4583	broad.mit.edu	37	chr11	1081270	1081270	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacggggggagggtccctgcGgcacccagcaggctccgtcc	16	16	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1081270	A	A	1081270	1	1	207	0	1	0	0	0	0	0	0	0	10069	1131	39	4		4	MUC2	11	1081270	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08		1081270	133925246	681	162811											
CARS	833	broad.mit.edu	37	chr11	3028040	3028040	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcctcagcccagccccGggagctctccttgtgacacc	10	17	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3028040	T	T	3028040	1	4	207	0	1	0	0	0	0	0	0	0	2683	1131	39	1		1	CARS	11	3028040	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1946770	3028040	131978476	682	162812											
OR51G1	79324	broad.mit.edu	37	chr11	4945495	4945495	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaatagagatccagccatgGagaccttctagaccttggaa	11	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4945495	T	T	4945495	2	4	207	1	0	0	0	0	0	0	0	1	11192	1161	41	3		3	OR51G1	11	4945495	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1917455	4945495	130061021	683	162813											
UBQLNL	143630	broad.mit.edu	37	chr11	5537492	5537492	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctggcattggaagtgagcCaatagcatctccttgaactg	10	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5537492	A	A	5537492	3	1	207	1	0	0	0	0	1	0	0	0	17026	593	21	2	1251	2	UBQLNL	11	5537492	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	591997	5537492	129469024	684	162814											
TRIM6-TRIM34	445372	broad.mit.edu	37	chr11	5663628	5663628	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcaaaaaatttttttcAtccctaggagtgagatctgg	11	6	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5663628	T	T	5663628	1	4	207	0	1	0	0	0	0	0	0	0	16659	232	8	5		5	TRIM6-TRIM34	11	5663628	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	126136	5663628	129342888	685	162815											
TRIM22	10346	broad.mit.edu	37	chr11	5717680	5717680	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacctccgacctaatcggcAtctggccaacatagttgaga	9	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5717680	G	G	5717680	3	3	207	1	0	0	0	0	1	0	0	0	16620	217	8	5	220	5	TRIM22	11	5717680	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	54052	5717680	129288836	686	162816											
CNGA4	1262	broad.mit.edu	37	chr11	6263036	6263036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcccagtatttgttccagGgacaaggatgggtggggtag	15	6	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6263036	T	T	6263036	1	4	207	0	1	0	0	0	0	0	0	0	3631	1247	43	2		2	CNGA4	11	6263036	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	545356	6263036	128743480	687	162817											
OR10A2	341276	broad.mit.edu	37	chr11	6891376	6891376	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaaggactcgtgccaaaCtggctgctgcctcctggttc	10	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6891376	A	A	6891376	3	1	207	1	0	0	0	0	1	0	0	0	10984	564	20	3	393	3	OR10A2	11	6891376	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	628340	6891376	128115140	688	162818											
NLRP14	338323	broad.mit.edu	37	chr11	7060810	7060810	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatggagtctgaggctctGgcagctctagttttcttaaa	10	8	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7060810	T	T	7060810	1	4	207	0	1	0	0	0	0	0	0	0	10571	1363	47	2		2	NLRP14	11	7060810	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	169434	7060810	127945706	689	162819											
CYB5R2	51700	broad.mit.edu	37	chr11	7690912	7690912	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actggagacaggggtgtaagCcctgaccaccaattcattat	10	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7690912	T	T	7690912	3	4	207	1	0	0	0	0	1	0	0	0	4160	739	26	4	652	4	CYB5R2	11	7690912	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	630102	7690912	127315604	690	162820											
NLRP10	338322	broad.mit.edu	37	chr11	7982367	7982367	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccttgggactcaaacccctCttcttcaacttttcttcaaa	3	14	6	0	rs112117055	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7982367	A	A	7982367	3	1	207	1	0	0	0	0	1	0	0	0	10567	912	32	3	1179	3	NLRP10	11	7982367	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	291455	7982367	127024149	691	162821											
GALNTL4	374378	broad.mit.edu	37	chr11	11398931	11398931	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtacaggttcagccctggGcagagaggagacagccagag	16	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11398931	C	C	11398931	1	2	207	0	1	0	0	0	0	0	0	0	6285	1218	42	4		4	GALNTL4	11	11398931	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3416564	11398931	123607585	692	162822											
PSMA1	5682	broad.mit.edu	37	chr11	14542013	14542013	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggcttgcaacacttcccCctccttaaaactttccgacc	4	16	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14542013	T	T	14542013	1	4	207	0	1	0	0	0	0	0	0	0	12772	638	22	4		4	PSMA1	11	14542013	5'Flank	SNP	C	TCGA-73-4668-01A-01D-1265-08	3143082	14542013	120464503	693	162823											
USH1C	10083	broad.mit.edu	37	chr11	17532128	17532128	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcacatttgaataacatgtgGatagaaatagcatgaaagca	9	5	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17532128	C	C	17532128	1	2	207	0	1	0	0	0	0	0	0	0	17160	1189	41	4		4	USH1C	11	17532128	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2990115	17532128	117474388	694	162824											
SLC6A5	9152	broad.mit.edu	37	chr11	20636080	20636080	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttcttaatatatctgGctttgcccagttaatccttt	4	9	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20636080	C	C	20636080	1	2	207	0	1	0	0	0	0	0	0	0	14801	1218	42	4		4	SLC6A5	11	20636080	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3103952	20636080	114370436	695	162825											
SLC6A5	9152	broad.mit.edu	37	chr11	20658583	20658583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggaggctttttagaccCattgagggaatgccatccta	10	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20658583	A	A	20658583	1	1	207	0	1	0	0	0	0	0	0	0	14801	609	21	2		2	SLC6A5	11	20658583	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	22503	20658583	114347933	696	162826											
MPPED2	744	broad.mit.edu	37	chr11	30432893	30432893	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caacctctagcatcatttgtGttccaacaatttacaaaaag	4	10	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30432893	C	C	30432893	1	2	207	0	1	0	0	0	0	0	0	0	9836	1392	48	4		4	MPPED2	11	30432893	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	9774310	30432893	104573623	697	162827											
MPPED2	744	broad.mit.edu	37	chr11	30439067	30439067	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacctttgcttcacttacctAgaggaggtccatgtgtcatg	9	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30439067	T	T	30439067	3	4	207	1	0	0	0	0	1	0	0	0	9836	420	15	5	318	5	MPPED2	11	30439067	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	6174	30439067	104567449	698	162828											
DEPDC7	91614	broad.mit.edu	37	chr11	33053077	33053077	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attggcagatattacagtagTagggaacctctgttaaatca	9	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33053077	A	A	33053077	3	1	207	1	0	0	0	0	1	0	0	0	4484	1635	57	5	1004	5	DEPDC7	11	33053077	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	2614010	33053077	101953439	699	162829											
C11orf41	25758	broad.mit.edu	37	chr11	33596522	33596522	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatggtctcagagctaaacAtatttgtattctggaaggtt	9	5	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33596522	G	G	33596522	1	3	207	0	1	0	0	0	0	0	0	0	1652	232	8	5		5	C11orf41	11	33596522	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	543445	33596522	101409994	700	162830											
ALKBH3	221120	broad.mit.edu	37	chr11	43905699	43905699	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtagtctgggatattccCatctcaaatgtctttaaact	6	9	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43905699	T	T	43905699	1	4	207	0	1	0	0	0	0	0	0	0	528	609	21	4		4	ALKBH3	11	43905699	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	10309177	43905699	91100817	701	162831											
EXT2	2132	broad.mit.edu	37	chr11	44129611	44129611	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctgaaaaagtacgtggatGactttggcgtctctgtcagc	11	9	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44129611	C	C	44129611	3	2	207	1	0	0	0	0	1	0	0	0	5367	1290	45	4	454	4	EXT2	11	44129611	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	223912	44129611	90876905	702	162832											
ARHGAP1	392	broad.mit.edu	37	chr11	46702262	46702262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttgggggctgtcgcgGggctcttctgtgtggatttc	18	8	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46702262	T	T	46702262	3	4	207	1	0	0	0	0	1	0	0	0	863	1232	43	2	672	2	ARHGAP1	11	46702262	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2572651	46702262	88304254	703	162833											
OR4C12	283093	broad.mit.edu	37	chr11	50003169	50003169	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgcactttttacctcaGcatttctgagtgtgtagacc	7	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50003169	T	T	50003169	3	4	207	1	0	0	0	0	1	0	0	0	11140	971	34	3	64	3	OR4C12	11	50003169	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3300907	50003169	85003347	704	162834											
OR4C46	119749	broad.mit.edu	37	chr11	51515839	51515839	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccctttgctcaacctcgcCtgcactgacacccatatgct	5	17	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515839	A	A	51515839	2	1	207	1	0	0	0	0	0	0	0	1	11145	668	24	2		2	OR4C46	11	51515839	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	1512670	51515839	83490677	705	162835											
TRIM48	79097	broad.mit.edu	37	chr11	55033003	55033003	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgtctctcattctgggcCccctcccaatgaaacggtct	7	14	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55033003	T	T	55033003	1	4	207	0	1	0	0	0	0	0	0	0	16648	638	22	4		4	TRIM48	11	55033003	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3517164	55033003	79973513	706	162836											
OR4C15	81309	broad.mit.edu	37	chr11	55322295	55322295	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgattgtcctcacagccatGgcctatgatcgttatgtggc	11	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55322295	T	T	55322295	3	4	207	1	0	0	0	0	1	0	0	0	11142	1348	47	2	515	2	OR4C15	11	55322295	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	289292	55322295	79684221	707	162837											
OR5D14	219436	broad.mit.edu	37	chr11	55563362	55563362	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtcctgcactgctgtgGtgacagagtctttcttgctg	11	11	2	2	rs145501127	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563362	T	T	55563362	3	4	207	1	0	0	0	0	1	0	0	0	11249	1261	44	3	333	3	OR5D14	11	55563362	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	241067	55563362	79443154	708	162838											
SPRYD5	84767	broad.mit.edu	37	chr11	55656573	55656573	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattgattcagatagtgaTactgccttgtgctggttgta	10	5	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55656573	C	C	55656573	1	2	207	0	1	0	0	0	0	0	0	0	15229	1421	49	5		5	SPRYD5	11	55656573	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	93211	55656573	79349943	709	162839											
OR9G9	504191	broad.mit.edu	37	chr11	56468369	56468369	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttcctttaacttctgccGtgaaaacatcattgatgact	6	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56468369	T	T	56468369	3	4	207	1	0	0	0	0	1	0	0	0	11346	1145	40	3	508	3	OR9G9	11	56468369	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	811796	56468369	78538147	710	162840											
OR5B21	219968	broad.mit.edu	37	chr11	58275328	58275328	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggccttgtcccctgacCgcaatgcagccaccgttttg	10	14	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58275328	A	A	58275328	3	1	207	1	0	0	0	0	1	0	0	0	11245	652	23	1	680	1	OR5B21	11	58275328	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1806959	58275328	76731188	711	162841											
TCN1	6947	broad.mit.edu	37	chr11	59620551	59620551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgggtcaaatgatttggCcactaaatcaccaaataatg	7	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59620551	A	A	59620551	1	1	207	0	1	0	0	0	0	0	0	0	15828	754	26	3		3	TCN1	11	59620551	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1345223	59620551	75385965	712	162842											
SLC15A3	51296	broad.mit.edu	37	chr11	60711284	60711284	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggagacctctcgtcggcCagcacgcgggcacattgacg	15	13	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60711284	T	T	60711284	2	4	207	1	0	0	0	0	0	0	0	1	14513	581	21	4		4	SLC15A3	11	60711284	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	1090733	60711284	74295232	713	162843											
VWCE	220001	broad.mit.edu	37	chr11	61042087	61042087	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagggagaagcaactcaaGgtctttgggcagaggcagct	15	7	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61042087	A	A	61042087	1	1	207	0	1	0	0	0	0	0	0	0	17372	1015	35	4		4	VWCE	11	61042087	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	330803	61042087	73964429	714	162844											
FADS2	9415	broad.mit.edu	37	chr11	61615530	61615530	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaagtgctatccccgagGgttgaaggttccgggaactg	14	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61615530	T	T	61615530	1	4	207	0	1	0	0	0	0	0	0	0	5412	1247	43	2		2	FADS2	11	61615530	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	573443	61615530	73390986	715	162845											
TAF6L	10629	broad.mit.edu	37	chr11	62554784	62554784	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgagtcagtggccccttcGttccttgtaaataaatcccg	8	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62554784	T	T	62554784	1	4	207	0	1	0	0	0	0	0	0	0	15650	1160	40	3		3	TAF6L	11	62554784	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	939254	62554784	72451732	716	162846											
PLCB3	5331	broad.mit.edu	37	chr11	64028866	64028866	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaccctgggttggggcCcacagggcacagccagcagc	15	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64028866	G	G	64028866	1	3	207	0	1	0	0	0	0	0	0	0	12124	638	22	4		4	PLCB3	11	64028866	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1474082	64028866	70977650	717	162847											
DPP3	10072	broad.mit.edu	37	chr11	66253943	66253943	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taggagaagagcttgggagtGggtagggaggctctggaagg	21	3	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66253943	C	C	66253943	1	2	207	0	1	0	0	0	0	0	0	0	4768	1363	47	4		4	DPP3	11	66253943	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2225077	66253943	68752573	718	162848											
RHOD	29984	broad.mit.edu	37	chr11	66837753	66837753	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagatgaggttctggtacCaaatagtttctccctaggtg	10	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66837753	T	T	66837753	1	4	207	0	1	0	0	0	0	0	0	0	13446	609	21	4		4	RHOD	11	66837753	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	583810	66837753	68168763	719	162849											
CHKA	1119	broad.mit.edu	37	chr11	67864518	67864518	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctccatacagccgcaggaGcactttccgaggctcatcac	9	16	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67864518	A	A	67864518	3	1	207	1	0	0	0	0	1	0	0	0	3378	971	34	4	987	4	CHKA	11	67864518	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1026765	67864518	67141998	720	162850											
MTL5	9633	broad.mit.edu	37	chr11	68514725	68514725	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaggaggcatcctctagtTcctgggacgatgggaacttg	14	9	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68514725	A	A	68514725	3	1	207	1	0	0	0	0	1	0	0	0	10030	1783	62	5	981	5	MTL5	11	68514725	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	650207	68514725	66491791	721	162851											
PGM2L1	283209	broad.mit.edu	37	chr11	74085689	74085689	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtcctaatattaagcccTtctgaggggtcaatatgtac	9	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74085689	C	C	74085689	1	2	207	0	1	0	0	0	0	0	0	0	11894	1624	56	5		5	PGM2L1	11	74085689	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	5570964	74085689	60920827	722	162852											
ARRB1	408	broad.mit.edu	37	chr11	74989622	74989622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggccctggtggagcagcCcccaccccctgccaagtccg	11	20	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74989622	A	A	74989622	1	1	207	0	1	0	0	0	0	0	0	0	984	638	22	2		2	ARRB1	11	74989622	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	903933	74989622	60016894	723	162853											
LRRC32	2615	broad.mit.edu	37	chr11	76376783	76376783	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaacattctagtaggtgctCattaaatgcaaggtacattc	7	7	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76376783	A	A	76376783	1	1	207	0	1	0	0	0	0	0	0	0	9074	841	29	3		3	LRRC32	11	76376783	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1387161	76376783	58629733	724	162854											
INTS4	92105	broad.mit.edu	37	chr11	77639378	77639378	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgagtaacaaattagAaacactcacctctagcacag	6	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77639378	G	G	77639378	1	3	207	0	1	0	0	0	0	0	0	0	7850	261	9	5		5	INTS4	11	77639378	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1262595	77639378	57367138	725	162855											
ODZ4	26011	broad.mit.edu	37	chr11	78431262	78431262	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccattcttgccattattaaTgacttcctcccattgcaact	3	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78431262	C	C	78431262	1	2	207	0	1	0	0	0	0	0	0	0	10932	1479	51	5		5	ODZ4	11	78431262	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	791884	78431262	56575254	726	162856											
DLG2	1740	broad.mit.edu	37	chr11	83183882	83183882	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatattacagagacaagccCtgctctgaaacacaggaaac	7	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83183882	A	A	83183882	1	1	207	0	1	0	0	0	0	0	0	0	4595	696	24	2		2	DLG2	11	83183882	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4752620	83183882	51822634	727	162857											
DLG2	1740	broad.mit.edu	37	chr11	84245910	84245910	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaccaaatgggctttgctGcagactcttctggcggtcac	10	12	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84245910	T	T	84245910	1	4	207	0	1	0	0	0	0	0	0	0	4595	1334	46	3		3	DLG2	11	84245910	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1062028	84245910	50760606	728	162858											
FOLH1B	219595	broad.mit.edu	37	chr11	89431852	89431852	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattgataaattttaaaatTggtatatttgaaataaagtt	5	0	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89431852	A	A	89431852	1	1	207	0	1	0	0	0	0	0	0	0	6038	1827	63	5		5	FOLH1B	11	89431852	3'UTR	SNP	T	TCGA-73-4668-01A-01D-1265-08	5185942	89431852	45574664	729	162859											
TRIM49	57093	broad.mit.edu	37	chr11	89531490	89531490	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggtggtaaagagactGcattgaatgtcattcttaac	13	5	2	2	rs143812880		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89531490	C	C	89531490	3	2	207	1	0	0	0	0	1	0	0	0	16649	1311	46	4	195	4	TRIM49	11	89531490	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	99638	89531490	45475026	730	162860											
FOLR4	390243	broad.mit.edu	37	chr11	94039017	94039017	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaagatggtctccgaacctCatcaaccctgatcatttggt	7	13	4	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94039017	A	A	94039017	1	1	207	0	1	0	0	0	0	0	0	0	6042	841	29	3		3	FOLR4	11	94039017	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4507527	94039017	40967499	731	162861											
FAM76B	143684	broad.mit.edu	37	chr11	95516202	95516202	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgcaaggaagagtttTagaaaatatgatttcaaagt	8	2	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95516202	C	C	95516202	1	2	207	0	1	0	0	0	0	0	0	0	5678	1769	61	5		5	FAM76B	11	95516202	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1477185	95516202	39490314	732	162862											
MAML2	84441	broad.mit.edu	37	chr11	95826046	95826046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggccagctgatgggggCctcagctgaggagagcctga	19	10	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95826046	A	A	95826046	3	1	207	1	0	0	0	0	1	0	0	0	9298	738	26	3	2337	3	MAML2	11	95826046	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	309844	95826046	39180470	733	162863											
C11orf70	85016	broad.mit.edu	37	chr11	101946661	101946661	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagccaaccagatagagaaGagttcctgttttgtcttttc	8	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101946661	T	T	101946661	4	4	207	1	0	0	0	0	0	1	0	0	1671	943	33	3	393	3	C11orf70	11	101946661	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	6120615	101946661	33059855	734	162864											
TMEM123	114908	broad.mit.edu	37	chr11	102323343	102323343	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcccaagcacctcgcgcGccgagtcccattgttccgag	12	17	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102323343	A	A	102323343	2	1	207	1	0	0	0	0	0	0	0	1	16159	1074	38	4		4	TMEM123	11	102323343	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	376682	102323343	32683173	735	162865											
MMP27	64066	broad.mit.edu	37	chr11	102575212	102575212	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatattattctgttccttgGaaattatctttatgttcctt	5	6	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102575212	A	A	102575212	1	1	207	0	1	0	0	0	0	0	0	0	9758	1189	41	4		4	MMP27	11	102575212	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	251869	102575212	32431304	736	162866											
CASP1	834	broad.mit.edu	37	chr11	104899699	104899699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgcattgaacagatatgCaaaattgctctcttggataa	7	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104899699	A	A	104899699	1	1	207	0	1	0	0	0	0	0	0	0	2694	725	25	3		3	CASP1	11	104899699	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2324487	104899699	30106817	737	162867											
GUCY1A2	2977	broad.mit.edu	37	chr11	106698651	106698651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtttactgaatatcgcGgcggaacagcgagactctgg	14	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106698651	T	T	106698651	1	4	207	0	1	0	0	0	0	0	0	0	6958	1131	39	1		1	GUCY1A2	11	106698651	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1798952	106698651	28307865	738	162868											
DDX10	1662	broad.mit.edu	37	chr11	108577363	108577363	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagtctctgacatttatGgttagacaaaaatggtttcc	8	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108577363	T	T	108577363	1	4	207	0	1	0	0	0	0	0	0	0	4375	1363	47	2		2	DDX10	11	108577363	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1878712	108577363	26429153	739	162869											
ZW10	9183	broad.mit.edu	37	chr11	113608356	113608357	+	Missense_Mutation	DNP	CC	AA	AA													attgagtaaagtccccatagCcttgcaatatatattcactg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	113608357	AA	AA	113608356	3	1	207	1	0	0	0	0	1	0	0	0	18376	739	26	3	397	3	ZW10	11	113608356	Missense_Mutation	DNP	CC	TCGA-73-4668-01A-01D-1265-08	5030993	113608356	21398160	740	162870											
RBM7	10179	broad.mit.edu	37	chr11	114271263	114271263	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgcgcacgtcgtcgcccGctgagagcaagcgcaacggg	15	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114271263	T	T	114271263	1	4	207	0	1	0	0	0	0	0	0	0	13253	1102	38	3		3	RBM7	11	114271263	5'Flank	SNP	G	TCGA-73-4668-01A-01D-1265-08	662907	114271263	20735253	741	162871											
FXYD6	53826	broad.mit.edu	37	chr11	117711080	117711080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttcctcatctcctggGgccctgcaggagaaagagac	13	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117711080	T	T	117711080	2	4	207	1	0	0	0	0	0	0	0	1	6182	1219	43	2		2	FXYD6	11	117711080	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	3439817	117711080	17295436	742	162872											
MFRP	83552	broad.mit.edu	37	chr11	119216676	119216676	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggtggcgttcagaggagCtgggtcctgggaggctggga	22	6	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119216676	A	A	119216676	1	1	207	0	1	0	0	0	0	0	0	0	9619	812	28	3		3	MFRP	11	119216676	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1505596	119216676	15789840	743	162873											
GRIK4	2900	broad.mit.edu	37	chr11	120690670	120690670	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgccccagacagtccagtCttgttgattttgccctgatt	8	12	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120690670	G	G	120690670	1	3	207	0	1	0	0	0	0	0	0	0	6842	928	32	4		4	GRIK4	11	120690670	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1473994	120690670	14315846	744	162874											
TMEM225	338661	broad.mit.edu	37	chr11	123754037	123754037	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctactggtagacaacttGcactctaggagagagaggac	12	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123754037	T	T	123754037	4	4	207	1	0	0	0	0	0	1	0	0	16270	1311	46	3	195	3	TMEM225	11	123754037	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3063367	123754037	11252479	745	162875											
OR10G7	390265	broad.mit.edu	37	chr11	123909148	123909148	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctgaggtgtctgcacaGgccagtttcaggatgggcgg	17	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123909148	T	T	123909148	2	4	207	1	0	0	0	0	0	0	0	1	10996	987	35	2		2	OR10G7	11	123909148	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	155111	123909148	11097368	746	162876											
OR8D1	283159	broad.mit.edu	37	chr11	124180032	124180032	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagacagcaacagctagggTgggcaccaaggtgttaaacc	14	9	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124180032	C	C	124180032	3	2	207	1	0	0	0	0	1	0	0	0	11325	1696	59	5	298	5	OR8D1	11	124180032	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	270884	124180032	10826484	747	162877											
OR8D1	283159	broad.mit.edu	37	chr11	124180094	124180094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcattgaggtgtgtgttgGagcaggagagattgaggagg	19	3	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124180094	T	T	124180094	3	4	207	1	0	0	0	0	1	0	0	0	11325	1174	41	3	360	3	OR8D1	11	124180094	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	62	124180094	10826422	748	162878											
NRGN	4900	broad.mit.edu	37	chr11	124615350	124615350	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctattcctaccccactcccgCggatcaagacccagtgaccc	6	19	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124615350	T	T	124615350	1	4	207	0	1	0	0	0	0	0	0	0	10746	783	27	4		4	NRGN	11	124615350	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	435256	124615350	10391166	749	162879											
FEZ1	9638	broad.mit.edu	37	chr11	125318323	125318323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggtctggcatgggcaagCtgggaaggttccctaactgg	15	9	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125318323	T	T	125318323	1	4	207	0	1	0	0	0	0	0	0	0	5880	812	28	4		4	FEZ1	11	125318323	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	702973	125318323	9688193	750	162880											
FEZ1	9638	broad.mit.edu	37	chr11	125351580	125351580	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acatctgtggcctggccccgCctggaggaaggaagagctgg	16	11	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125351580	G	G	125351580	1	3	207	0	1	0	0	0	0	0	0	0	5880	754	26	4		4	FEZ1	11	125351580	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	33257	125351580	9654936	751	162881											
PATE1	160065	broad.mit.edu	37	chr11	125616669	125616669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtgaggtgagcaccaGgggccaaaaaaaaccaaaat	14	7	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125616669	T	T	125616669	1	4	207	0	1	0	0	0	0	0	0	0	11567	1015	35	2		2	PATE1	11	125616669	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	265089	125616669	9389847	752	162882											
DDX25	29118	broad.mit.edu	37	chr11	125778220	125778220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtattctacttggttatGtttagtttcttattttcagt	8	4	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125778220	T	T	125778220	1	4	207	0	1	0	0	0	0	0	0	0	4385	1392	48	3		3	DDX25	11	125778220	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	161551	125778220	9228296	753	162883											
DCPS	28960	broad.mit.edu	37	chr11	126215448	126215448	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taccagcagcgcacgctcacCttcgccctcagggctgacga	10	17	2	1	rs143294413	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126215448	G	G	126215448	2	3	207	1	0	0	0	0	0	0	0	1	4334	668	24	4		4	DCPS	11	126215448	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	437228	126215448	8791068	754	162884											
ETS1	2113	broad.mit.edu	37	chr11	128360370	128360370	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttttgggatccccagtcGttgctgttctttagtgaaac	9	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128360370	A	A	128360370	4	1	207	1	0	0	0	0	0	1	0	0	5317	1153	40	4	1169	4	ETS1	11	128360370	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2144922	128360370	6646146	755	162885											
NCAPD3	23310	broad.mit.edu	37	chr11	134062554	134062554	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcctacggccttcttctaTagggaacacaggtcatacag	9	11	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134062554	C	C	134062554	1	2	207	0	1	0	0	0	0	0	0	0	10301	1421	49	5		5	NCAPD3	11	134062554	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	5702184	134062554	943962	756	162886											
SLC6A12	6539	broad.mit.edu	37	chr12	306078	306078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacagcacagtcagggaggCtccagggcgtgtgctgccct	14	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	306078	A	A	306078	1	1	207	0	1	0	0	0	0	0	0	0	14789	812	28	3		3	SLC6A12	12	306078	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08		306078	133545817	757	162887											
CACNA1C	775	broad.mit.edu	37	chr12	2794992	2794992	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctccgaagaggggtttcctCcgctctgcctcactaggtaa	10	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2794992	A	A	2794992	2	1	207	1	0	0	0	0	0	0	0	1	2566	842	30	3		3	CACNA1C	12	2794992	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2488914	2794992	131056903	758	162888											
ANO2	57101	broad.mit.edu	37	chr12	5757052	5757052	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttgcatatatttgcatgcGattgatcattatcactctat	5	7	3	1	rs143337216	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5757052	A	A	5757052	1	1	207	0	1	0	0	0	0	0	0	0	697	1073	37	4		4	ANO2	12	5757052	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2962060	5757052	128094843	759	162889											
PLEKHG6	55200	broad.mit.edu	37	chr12	6424235	6424235	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgtttgggatgccccGgctgccccctgaggaccggc	14	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6424235	A	A	6424235	3	1	207	1	0	0	0	0	1	0	0	0	12169	1116	39	4	415	4	PLEKHG6	12	6424235	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	667183	6424235	127427660	760	162890											
IFFO1	25900	broad.mit.edu	37	chr12	6660140	6660140	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttacacggtcttgcagctgGatccgcaccgtgtactcctc	9	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6660140	C	C	6660140	3	2	207	1	0	0	0	0	1	0	0	0	7580	1164	41	4	926	4	IFFO1	12	6660140	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	235905	6660140	127191755	761	162891											
IFFO1	25900	broad.mit.edu	37	chr12	6664921	6664921	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttccggcgctccagctcaTgcaccttggccaggaagcag	13	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6664921	A	A	6664921	3	1	207	1	0	0	0	0	1	0	0	0	7580	1464	51	5	1456	5	IFFO1	12	6664921	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	4781	6664921	127186974	762	162892											
ING4	51147	broad.mit.edu	37	chr12	6760378	6760378	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatctatttcttcttccgttCttgggagcagcgtgggcaaa	10	9	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6760378	G	G	6760378	3	3	207	1	0	0	0	0	1	0	0	0	7808	922	32	4	20	4	ING4	12	6760378	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	95457	6760378	127091517	763	162893											
CD69	969	broad.mit.edu	37	chr12	9907174	9907174	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaatataaagagacttctgGagacttaccagttgttaaat	9	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9907174	T	T	9907174	1	4	207	0	1	0	0	0	0	0	0	0	3061	1189	41	3		3	CD69	12	9907174	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3146796	9907174	123944721	764	162894											
PDE3A	5139	broad.mit.edu	37	chr12	20704681	20704681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagcgaggtggtactggCgggagagcggctgagagaga	20	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20704681	A	A	20704681	1	1	207	0	1	0	0	0	0	0	0	0	11731	783	27	3		3	PDE3A	12	20704681	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	10797507	20704681	113147214	765	162895											
ARNTL2	56938	broad.mit.edu	37	chr12	27553768	27553768	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttgaagctattaaaggcGtgtcttagtagcactgctag	10	6	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27553768	A	A	27553768	1	1	207	0	1	0	0	0	0	0	0	0	972	1160	40	4		4	ARNTL2	12	27553768	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6849087	27553768	106298127	766	162896											
FAR2	55711	broad.mit.edu	37	chr12	29463958	29463958	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatgttctttttcctatgCagactgggaaagggtttctt	9	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29463958	T	T	29463958	1	4	207	0	1	0	0	0	0	0	0	0	5732	725	25	4		4	FAR2	12	29463958	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1910190	29463958	104387937	767	162897											
ERGIC2	51290	broad.mit.edu	37	chr12	29524531	29524531	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcatccaactcttttacCaaacttaaagtttttttccg	4	10	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29524531	T	T	29524531	2	4	207	1	0	0	0	0	0	0	0	1	5266	593	21	4		4	ERGIC2	12	29524531	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	60573	29524531	104327364	768	162898											
OVCH1	341350	broad.mit.edu	37	chr12	29650533	29650533	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcctcctccgcagtcctGgtgcccaggtccctaggctc	10	18	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29650533	T	T	29650533	1	4	207	0	1	0	0	0	0	0	0	0	11417	1363	47	2		2	OVCH1	12	29650533	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	126002	29650533	104201362	769	162899											
TMTC1	83857	broad.mit.edu	37	chr12	29725102	29725102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtccttcaggaaattggCatagttgtagtgaaccttgg	12	6	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29725102	A	A	29725102	3	1	207	1	0	0	0	0	1	0	0	0	16383	710	25	3	1220	3	TMTC1	12	29725102	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	74569	29725102	104126793	770	162900											
FAM60A	58516	broad.mit.edu	37	chr12	31435745	31435745	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaggcttgaagagatgTgtgtcaatgaggacttcccc	12	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31435745	C	C	31435745	2	2	207	1	0	0	0	0	0	0	0	1	5646	1683	59	5		5	FAM60A	12	31435745	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	1710643	31435745	102416150	771	162901											
PKP2	5318	broad.mit.edu	37	chr12	32945692	32945692	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaaaggacattctgagatCagggagaatgagtgaggctt	14	4	2	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32945692	A	A	32945692	1	1	207	0	1	0	0	0	0	0	0	0	12080	841	29	3		3	PKP2	12	32945692	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1509947	32945692	100906203	772	162902											
SYT10	341359	broad.mit.edu	37	chr12	33560310	33560310	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgaacacacacacatatAcacaaaatcattgagggaga	8	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33560310	G	G	33560310	1	3	207	0	1	0	0	0	0	0	0	0	15585	406	14	5		5	SYT10	12	33560310	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	614618	33560310	100291585	773	162903											
LRRK2	120892	broad.mit.edu	37	chr12	40629571	40629571	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attaaaaaaaaagttgatacCattaagtaaatgtgtgtgtg	8	2	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40629571	A	A	40629571	1	1	207	0	1	0	0	0	0	0	0	0	9120	609	21	2		2	LRRK2	12	40629571	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	7069261	40629571	93222324	774	162904											
ADAMTS20	80070	broad.mit.edu	37	chr12	43823488	43823488	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttggtaataaagcggtctCaagtttagaaataaatgagc	10	4	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43823488	A	A	43823488	4	1	207	1	0	0	0	0	0	1	0	0	266	835	29	3	2374	3	ADAMTS20	12	43823488	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3193917	43823488	90028407	775	162905											
ADAMTS20	80070	broad.mit.edu	37	chr12	43847848	43847848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttacacatagcccatgaCggcaatgctataaaaataat	6	8	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43847848	A	A	43847848	3	1	207	1	0	0	0	0	1	0	0	0	266	536	19	3	4221	3	ADAMTS20	12	43847848	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	24360	43847848	90004047	776	162906											
TMEM117	84216	broad.mit.edu	37	chr12	44402814	44402814	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaattctctggtacttaAtaagatcagagctaactgaa	8	6	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44402814	T	T	44402814	1	4	207	0	1	0	0	0	0	0	0	0	16154	116	4	5		5	TMEM117	12	44402814	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	554966	44402814	89449081	777	162907											
NELL2	4753	broad.mit.edu	37	chr12	45097679	45097679	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattaaggtaaatgaaactaTgacaatgcaaatttttccta	5	5	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45097679	G	G	45097679	1	3	207	0	1	0	0	0	0	0	0	0	10429	1479	51	5		5	NELL2	12	45097679	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	694865	45097679	88754216	778	162908											
NELL2	4753	broad.mit.edu	37	chr12	45169764	45169764	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatttttaaagagtgggagCatctgagttcccttagtctc	9	7	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45169764	T	T	45169764	1	4	207	0	1	0	0	0	0	0	0	0	10429	725	25	4		4	NELL2	12	45169764	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	72085	45169764	88682131	779	162909											
ANO6	196527	broad.mit.edu	37	chr12	45781891	45781891	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attattcagtacagatttctGaaacatcagtcatcattgaa	5	7	5	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45781891	A	A	45781891	1	1	207	0	1	0	0	0	0	0	0	0	701	1305	45	4		4	ANO6	12	45781891	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	612127	45781891	88070004	780	162910											
ASB8	140461	broad.mit.edu	37	chr12	48543554	48543554	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatggcagcccagctgagCggtgtatcattgttgtaatc	11	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48543554	A	A	48543554	2	1	207	1	0	0	0	0	0	0	0	1	1033	755	27	3		3	ASB8	12	48543554	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2761663	48543554	85308341	781	162911											
LARP4	113251	broad.mit.edu	37	chr12	50834321	50834321	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcactttccagtcagacacaGatgcacaacaggtaagaaga	8	10	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50834321	T	T	50834321	3	4	207	1	0	0	0	0	1	0	0	0	8702	942	33	3	765	3	LARP4	12	50834321	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2290767	50834321	83017574	782	162912											
TFCP2	7024	broad.mit.edu	37	chr12	51518686	51518686	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttccaaaggtcagatatgTcaaggacacgtcgtccagga	10	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51518686	A	A	51518686	1	1	207	0	1	0	0	0	0	0	0	0	15918	1682	58	5		5	TFCP2	12	51518686	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	684365	51518686	82333209	783	162913											
ACVRL1	94	broad.mit.edu	37	chr12	52312926	52312926	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctgctgggactaggatgGcgtggggtggtggctcatgg	19	8	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52312926	C	C	52312926	1	2	207	0	1	0	0	0	0	0	0	0	225	1218	42	4		4	ACVRL1	12	52312926	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	794240	52312926	81538969	784	162914											
NR4A1	3164	broad.mit.edu	37	chr12	52432653	52432653	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaggccctgtgcctggctCaaaggcccagggacccaggc	13	15	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52432653	T	T	52432653	1	4	207	0	1	0	0	0	0	0	0	0	10727	841	29	4		4	NR4A1	12	52432653	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	119727	52432653	81419242	785	162915											
KRT84	3890	broad.mit.edu	37	chr12	52773822	52773822	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccctggttatacacacatCtggggagcgttgaaaaacac	9	11	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52773822	A	A	52773822	1	1	207	0	1	0	0	0	0	0	0	0	8569	928	32	3		3	KRT84	12	52773822	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	341169	52773822	81078073	786	162916											
KRT6A	3853	broad.mit.edu	37	chr12	52884515	52884515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtctgcatctgggacagCtcctgcagaacagaaggtca	13	10	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52884515	A	A	52884515	3	1	207	1	0	0	0	0	1	0	0	0	8551	796	28	3	799	3	KRT6A	12	52884515	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	110693	52884515	80967380	787	162917											
DGKA	1606	broad.mit.edu	37	chr12	56347165	56347165	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttcccatgcaaattgacGgagaaccctggatgcagacg	10	13	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56347165	A	A	56347165	3	1	207	1	0	0	0	0	1	0	0	0	4505	1117	39	4	2181	4	DGKA	12	56347165	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3462650	56347165	77504730	788	162918											
STAT2	6773	broad.mit.edu	37	chr12	56750038	56750038	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagaatagcatggtagcctTggaatcatcactcccaagtg	10	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56750038	A	A	56750038	4	1	207	1	0	0	0	0	0	1	0	0	15383	1821	63	5	2480	5	STAT2	12	56750038	Nonsense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	402873	56750038	77101857	789	162919											
SRGAP1	57522	broad.mit.edu	37	chr12	64458826	64458826	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgattcatgcatcatttAaataacagagccgtgcttct	8	8	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64458826	G	G	64458826	1	3	207	0	1	0	0	0	0	0	0	0	15263	377	13	5		5	SRGAP1	12	64458826	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	7708788	64458826	69393069	790	162920											
GRIP1	23426	broad.mit.edu	37	chr12	66990859	66990859	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctatacttgggttagctgTgggataaatctttgaaaatg	10	5	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66990859	A	A	66990859	1	1	207	0	1	0	0	0	0	0	0	0	6853	1711	59	5		5	GRIP1	12	66990859	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2532033	66990859	66861036	791	162921											
TPH2	121278	broad.mit.edu	37	chr12	72332704	72332704	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccttcctctcaatctccgCcagcgctgctactgcccctc	5	22	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72332704	A	A	72332704	1	1	207	0	1	0	0	0	0	0	0	0	16526	754	26	3		3	TPH2	12	72332704	5'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	5341845	72332704	61519191	792	162922											
TPH2	121278	broad.mit.edu	37	chr12	72332773	72332773	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttacaccgggatccatgcagCcagcaatgatgatgttttcc	9	11	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72332773	G	G	72332773	3	3	207	1	0	0	0	0	1	0	0	0	16526	739	26	4	9	4	TPH2	12	72332773	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	69	72332773	61519122	793	162923											
TRHDE	29953	broad.mit.edu	37	chr12	72863767	72863767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatacctacattaagagCtaaattattatcctcccaaa	3	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72863767	A	A	72863767	1	1	207	0	1	0	0	0	0	0	0	0	16603	812	28	3		3	TRHDE	12	72863767	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	530994	72863767	60988128	794	162924											
NAP1L1	4673	broad.mit.edu	37	chr12	76454042	76454042	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagagcattcactcgtcttTtaactaccctaggcaggctg	9	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76454042	G	G	76454042	3	3	207	1	0	0	0	0	1	0	0	0	10250	1841	64	5	995	5	NAP1L1	12	76454042	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	3590275	76454042	57397853	795	162925											
E2F7	144455	broad.mit.edu	37	chr12	77458228	77458228	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatattaattattatgctTaaatacaaatacaaatggca	3	5	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77458228	C	C	77458228	1	2	207	0	1	0	0	0	0	0	0	0	4912	1769	61	5		5	E2F7	12	77458228	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1004186	77458228	56393667	796	162926											
NAV3	89795	broad.mit.edu	37	chr12	78225462	78225462	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacccctccaaggaaaagCcaaggagaaagaagacagca	10	10	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78225462	T	T	78225462	3	4	207	1	0	0	0	0	1	0	0	0	10279	739	26	4	223	4	NAV3	12	78225462	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	767234	78225462	55626433	797	162927											
NAV3	89795	broad.mit.edu	37	chr12	78400408	78400408	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcccccacaccatcttcaGacagactgaagccacctgtc	5	19	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78400408	T	T	78400408	3	4	207	1	0	0	0	0	1	0	0	0	10279	942	33	3	1120	3	NAV3	12	78400408	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	174946	78400408	55451487	798	162928											
NAV3	89795	broad.mit.edu	37	chr12	78570162	78570162	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggtaatattttaaaataCtgatcagccttcattccctt	4	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78570162	A	A	78570162	1	1	207	0	1	0	0	0	0	0	0	0	10279	580	20	3		3	NAV3	12	78570162	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	169754	78570162	55281733	799	162929											
C12orf50	160419	broad.mit.edu	37	chr12	88379940	88379940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatggaagccaatagaagcCaaaataattaagtttagaga	8	4	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88379940	A	A	88379940	1	1	207	0	1	0	0	0	0	0	0	0	1708	609	21	2		2	C12orf50	12	88379940	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	9809778	88379940	45471955	800	162930											
EPYC	1833	broad.mit.edu	37	chr12	91364013	91364013	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccattccctctacatgcAgatatttgtaaaatagcatg	5	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91364013	C	C	91364013	1	2	207	0	1	0	0	0	0	0	0	0	5243	203	7	5		5	EPYC	12	91364013	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2984073	91364013	42487882	801	162931											
LUM	4060	broad.mit.edu	37	chr12	91502412	91502412	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcagcttcttcagttgtttCaatttagagaaaactctccc	6	10	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91502412	A	A	91502412	3	1	207	1	0	0	0	0	1	0	0	0	9172	825	29	3	679	3	LUM	12	91502412	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	138399	91502412	42349483	802	162932											
C12orf63	374467	broad.mit.edu	37	chr12	97045291	97045291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actattgacacataatatttGgaaaaagatgaagttgttca	7	4	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97045291	T	T	97045291	1	4	207	0	1	0	0	0	0	0	0	0	1719	1363	47	2		2	C12orf63	12	97045291	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5542879	97045291	36806604	803	162933											
NEDD1	121441	broad.mit.edu	37	chr12	97314011	97314011	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgattgaaaaacttcaGctatttttaaatggtagtgt	8	4	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97314011	T	T	97314011	1	4	207	0	1	0	0	0	0	0	0	0	10404	986	34	3		3	NEDD1	12	97314011	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	268720	97314011	36537884	804	162934											
UHRF1BP1L	23074	broad.mit.edu	37	chr12	100452831	100452831	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatacctgattacaagtctGcggctctttttgtgactctg	9	9	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100452831	A	A	100452831	4	1	207	1	0	0	0	0	0	1	0	0	17095	1328	46	4	2202	4	UHRF1BP1L	12	100452831	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3138820	100452831	33399064	805	162935											
ANO4	121601	broad.mit.edu	37	chr12	101510309	101510309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgcccagggctttccagCgtatcccaacctgagtcctg	9	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101510309	A	A	101510309	1	1	207	0	1	0	0	0	0	0	0	0	699	783	27	3		3	ANO4	12	101510309	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1057478	101510309	32341586	806	162936											
SPIC	121599	broad.mit.edu	37	chr12	101871227	101871227	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaacaccaaatgcccatAgtgtcaagattgagaaaccc	7	12	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101871227	G	G	101871227	1	3	207	0	1	0	0	0	0	0	0	0	15169	435	15	5		5	SPIC	12	101871227	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	360918	101871227	31980668	807	162937											
C12orf48	55010	broad.mit.edu	37	chr12	102591218	102591218	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatacttctgtttataaaaGtatcagttttacttttcaga	4	5	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102591218	T	T	102591218	1	4	207	0	1	0	0	0	0	0	0	0	1705	1044	36	3		3	C12orf48	12	102591218	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	719991	102591218	31260677	808	162938											
KCTD10	83892	broad.mit.edu	37	chr12	109907302	109907302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcatggccagaggcaggcaCatggtgggtgagcttacctt	15	10	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109907302	A	A	109907302	1	1	207	0	1	0	0	0	0	0	0	0	8167	493	17	3		3	KCTD10	12	109907302	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	7316084	109907302	23944593	809	162939											
GPN3	51184	broad.mit.edu	37	chr12	110903094	110903094	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccatactctggaatactatCcactaaggtcaaaactatgc	5	11	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110903094	G	G	110903094	1	3	207	0	1	0	0	0	0	0	0	0	6684	870	30	4		4	GPN3	12	110903094	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	995792	110903094	22948801	810	162940											
TMEM116	89894	broad.mit.edu	37	chr12	112380944	112380944	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacttgcccagactggCctcgaattcctgggcataag	9	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112380944	A	A	112380944	1	1	207	0	1	0	0	0	0	0	0	0	16153	754	26	3		3	TMEM116	12	112380944	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1477850	112380944	21470951	811	162941											
TBX5	6910	broad.mit.edu	37	chr12	114832748	114832748	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaatcaaaactccctttGtctccagataaaaccctgct	4	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114832748	T	T	114832748	1	4	207	0	1	0	0	0	0	0	0	0	15783	1392	48	3		3	TBX5	12	114832748	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2451804	114832748	19019147	812	162942											
TBX5	6910	broad.mit.edu	37	chr12	114839576	114839576	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaagccaccttttcttctTcacctctcccacaatttctc	1	18	5	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114839576	A	A	114839576	1	1	207	0	1	0	0	0	0	0	0	0	15783	1798	62	5		5	TBX5	12	114839576	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	6828	114839576	19012319	813	162943											
NOS1	4842	broad.mit.edu	37	chr12	117703232	117703232	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagtcggcagggcagccCccccggcagcggtactcatt	12	17	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117703232	A	A	117703232	2	1	207	1	0	0	0	0	0	0	0	1	10636	610	22	2		2	NOS1	12	117703232	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2863656	117703232	16148663	814	162944											
MLXIP	22877	broad.mit.edu	37	chr12	122617798	122617798	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgtccctctgtcccaGcgcccggcctgtgtagttgg	12	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122617798	T	T	122617798	1	4	207	0	1	0	0	0	0	0	0	0	9729	986	34	3		3	MLXIP	12	122617798	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4914566	122617798	11234097	815	162945											
GPR109A	338442	broad.mit.edu	37	chr12	123186603	123186603	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actcatctgccaccgtttccCtaaatcgcattctctgaatc	4	15	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123186603	G	G	123186603	1	3	207	0	1	0	0	0	0	0	0	0	6690	696	24	4		4	GPR109A	12	123186603	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	568805	123186603	10665292	816	162946											
SETD8	387893	broad.mit.edu	37	chr12	123875039	123875039	+	Intron	DEL	G	-	-													cagtgctctcctgagacaatGggggctggcatcccctggta							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123875039	-	-	123875039	6	5	207	0	1	1	0	1	0	0	0	0	14250	1363	47	0		0	SETD8	12	123875039	Intron	DEL	G	TCGA-73-4668-01A-01D-1265-08	688436	123875039	9976856	817	162947											
EP400	57634	broad.mit.edu	37	chr12	132476772	132476772	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatatctttgactgatgacGaaggtctgttccccctcagc	9	12	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132476772	T	T	132476772	4	4	207	1	0	0	0	0	0	1	0	0	5191	1059	37	3	2769	3	EP400	12	132476772	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	8601733	132476772	1375123	818	162948											
NOC4L	79050	broad.mit.edu	37	chr12	132628999	132628999	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtcacgggagcgccggcgGctgagaatccgcgttgttcc	15	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132628999	T	T	132628999	1	4	207	0	1	0	0	0	0	0	0	0	10610	1218	42	3		3	NOC4L	12	132628999	5'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	152227	132628999	1222896	819	162949											
POLE	5426	broad.mit.edu	37	chr12	133248726	133248726	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcaggtgcacaataaaCgtgctgctgaaagacgtggt	13	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133248726	G	G	133248726	1	3	207	0	1	0	0	0	0	0	0	0	12291	551	19	4		4	POLE	12	133248726	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	619727	133248726	603169	820	162950											
GOLGA3	2802	broad.mit.edu	37	chr12	133375152	133375152	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggccccagggtgaggGtcactggctgccccctcagt	15	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133375152	A	A	133375152	1	1	207	0	1	0	0	0	0	0	0	0	6618	1276	44	4		4	GOLGA3	12	133375152	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	126426	133375152	476743	821	162951											
GOLGA3	2802	broad.mit.edu	37	chr12	133381628	133381628	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaaagatcccaacaacCacaatgattttaagaaaacg	5	10	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133381628	G	G	133381628	1	3	207	0	1	0	0	0	0	0	0	0	6618	609	21	4		4	GOLGA3	12	133381628	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	6476	133381628	470267	822	162952											
CHFR	55743	broad.mit.edu	37	chr12	133448864	133448864	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accccggcaagccttcctctCtcttactgtgttccggttca	7	16	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133448864	A	A	133448864	1	1	207	0	1	0	0	0	0	0	0	0	3368	928	32	3		3	CHFR	12	133448864	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	67236	133448864	403031	823	162953											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20235960	20235960	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaacgggaccaccgccctCattcatgctgcagagaaggt	11	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20235960	T	T	20235960	2	4	207	1	0	0	0	0	0	0	0	1	9821	813	29	4		4	MPHOSPH8	13	20235960	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08		20235960	94933918	824	162954											
CRYL1	51084	broad.mit.edu	37	chr13	21014051	21014051	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacttggcatctgagaaaaCagcggaagcagggaggtccc	13	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21014051	T	T	21014051	1	4	207	0	1	0	0	0	0	0	0	0	3952	493	17	4		4	CRYL1	13	21014051	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	778091	21014051	94155827	825	162955											
XPO4	64328	broad.mit.edu	37	chr13	21357750	21357750	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaaagtttcaggctctccAaaatccaaaatggccaaatg	6	10	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21357750	T	T	21357750	1	4	207	0	1	0	0	0	0	0	0	0	17573	145	5	5		5	XPO4	13	21357750	3'UTR	SNP	A	TCGA-73-4668-01A-01D-1265-08	343699	21357750	93812128	826	162956											
SACS	26278	broad.mit.edu	37	chr13	23929924	23929924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagttgtgaaggttgtaggCgaagagggaaacggaaaaat	15	2	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23929924	T	T	23929924	3	4	207	1	0	0	0	0	1	0	0	0	13915	768	27	4	12924	4	SACS	13	23929924	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2572174	23929924	91239954	827	162957											
RNF17	56163	broad.mit.edu	37	chr13	25353696	25353696	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtagtgagtctatgttGcttttgtaaccaaaacggta	9	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25353696	C	C	25353696	1	2	207	0	1	0	0	0	0	0	0	0	13572	1334	46	4		4	RNF17	13	25353696	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1423772	25353696	89816182	828	162958											
ATP8A2	51761	broad.mit.edu	37	chr13	26114522	26114522	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagacgaaccttaaaatacGtcaggtaaagtcacctctga	9	9	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26114522	C	C	26114522	3	2	207	1	0	0	0	0	1	0	0	0	1197	1145	40	4	677	4	ATP8A2	13	26114522	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	760826	26114522	89055356	829	162959											
RXFP2	122042	broad.mit.edu	37	chr13	32351502	32351502	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attggaaatgtttcttgataCattttgtcagaattctagat	7	4	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32351502	G	G	32351502	1	3	207	0	1	0	0	0	0	0	0	0	13871	493	17	4		4	RXFP2	13	32351502	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	6236980	32351502	82818376	830	162960											
BRCA2	675	broad.mit.edu	37	chr13	32958909	32958909	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgcctgatttggaaaacaGagtcttggaccagattgggt	12	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32958909	T	T	32958909	1	4	207	0	1	0	0	0	0	0	0	0	1508	957	33	3		3	BRCA2	13	32958909	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	607407	32958909	82210969	831	162961											
KIAA0564	23078	broad.mit.edu	37	chr13	42440254	42440254	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactttgggaggccaaggCaggcagatcacttgaggtta	13	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42440254	A	A	42440254	1	1	207	0	1	0	0	0	0	0	0	0	8255	725	25	3		3	KIAA0564	13	42440254	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	9481345	42440254	72729624	832	162962											
ZC3H13	23091	broad.mit.edu	37	chr13	46559510	46559510	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcacttcgagactcatttcTggactcattccttatttccg	5	12	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46559510	A	A	46559510	4	1	207	1	0	0	0	0	0	1	0	0	17691	1588	55	5	3084	5	ZC3H13	13	46559510	Nonsense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	4119256	46559510	68610368	833	162963											
C13orf1	57213	broad.mit.edu	37	chr13	50510295	50510295	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgtccagctgcacggccGgcatctccttcagagggatg	14	13	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50510295	C	C	50510295	3	2	207	1	0	0	0	0	1	0	0	0	1730	1116	39	4	533	4	C13orf1	13	50510295	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3950785	50510295	64659583	834	162964											
RNASEH2B	79621	broad.mit.edu	37	chr13	51503800	51503800	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acacgtggggttgtgggtctGtcaccgggtttggagtctgg	18	7	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51503800	C	C	51503800	1	2	207	0	1	0	0	0	0	0	0	0	13524	1392	48	4		4	RNASEH2B	13	51503800	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	993505	51503800	63666078	835	162965											
WDFY2	115825	broad.mit.edu	37	chr13	52158888	52158888	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgcagcggatggaggGgtcccaggaggtggtgaata	18	8	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52158888	T	T	52158888	3	4	207	1	0	0	0	0	1	0	0	0	17396	1232	43	2	67	2	WDFY2	13	52158888	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	655088	52158888	63010990	836	162966											
CCDC70	83446	broad.mit.edu	37	chr13	52439526	52439526	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatccctcatggccaccccGccattccggctgataaggaa	8	16	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52439526	A	A	52439526	2	1	207	1	0	0	0	0	0	0	0	1	2871	1074	38	4		4	CCDC70	13	52439526	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	280638	52439526	62730352	837	162967											
THSD1	55901	broad.mit.edu	37	chr13	52971467	52971467	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattcttccccatgtcaaaCaaagtacagttaaaaattgt	4	8	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52971467	T	T	52971467	2	4	207	1	0	0	0	0	0	0	0	1	16000	477	17	4		4	THSD1	13	52971467	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	531941	52971467	62198411	838	162968											
HNRNPA1L2	144983	broad.mit.edu	37	chr13	53191884	53191884	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgccccgtgctgtacattCagttatcctccaacttcctg	7	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53191884	T	T	53191884	1	4	207	0	1	0	0	0	0	0	0	0	7325	841	29	4		4	HNRNPA1L2	13	53191884	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	220417	53191884	61977994	839	162969											
DIS3	22894	broad.mit.edu	37	chr13	73333982	73333982	+	Frame_Shift_Del	DEL	T	-	-													ttggtccattaaggtccatgTttgaagtatcagtaggaatg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73333982	-	-	73333982	7	5	207	1	0	1	0	1	0	0	0	0	4575	1725	60	0	52	0	DIS3	13	73333982	Frame_Shift_Del	DEL	T	TCGA-73-4668-01A-01D-1265-08	20142098	73333982	41835896	840	162970											
TBC1D4	9882	broad.mit.edu	37	chr13	75915566	75915566	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagaatgaaaacaggaaCgcataaaaacaggatccaat	8	8	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75915566	G	G	75915566	1	3	207	0	1	0	0	0	0	0	0	0	15744	551	19	4		4	TBC1D4	13	75915566	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2581584	75915566	39254312	841	162971											
SCEL	8796	broad.mit.edu	37	chr13	78177196	78177196	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttttgaaactgatataaaCttttttttttaaagaagtga	6	2	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78177196	G	G	78177196	1	3	207	0	1	0	0	0	0	0	0	0	14000	580	20	4		4	SCEL	13	78177196	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2261630	78177196	36992682	842	162972											
COL4A1	1282	broad.mit.edu	37	chr13	110831469	110831469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcacacgaatggccccaGcaacggaaagccacgagctc	10	15	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110831469	T	T	110831469	1	4	207	0	1	0	0	0	0	0	0	0	3721	986	34	3		3	COL4A1	13	110831469	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	32654273	110831469	4338409	843	162973											
RASA3	22821	broad.mit.edu	37	chr13	114776579	114776579	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgtgggaggtttttcacGtgtattttctgaagagagaa	12	3	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114776579	A	A	114776579	1	1	207	0	1	0	0	0	0	0	0	0	13170	1160	40	4		4	RASA3	13	114776579	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3945110	114776579	393299	844	162974											
RASA3	22821	broad.mit.edu	37	chr13	114806652	114806652	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcagaagccagcccatcatCaccgcagcttatttccaaca	6	15	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114806652	A	A	114806652	1	1	207	0	1	0	0	0	0	0	0	0	13170	841	29	3		3	RASA3	13	114806652	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	30073	114806652	363226	845	162975											
NGDN	25983	broad.mit.edu	37	chr14	23939129	23939129	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagtctgtgaacccgagTgtgaaggccccgagtctggg	17	10	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23939129	C	C	23939129	1	2	207	0	1	0	0	0	0	0	0	0	10488	1711	59	5		5	NGDN	14	23939129	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08		23939129	83410411	846	162976											
HECTD1	25831	broad.mit.edu	37	chr14	31642990	31642990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagccagtgatgcaaagCatcgcagagctccatctgaa	11	11	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31642990	A	A	31642990	3	1	207	1	0	0	0	0	1	0	0	0	7106	710	25	3	7362	3	HECTD1	14	31642990	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	7703861	31642990	75706550	847	162977											
FAM179B	23116	broad.mit.edu	37	chr14	45468632	45468632	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acttggattttcacaaatatGtggtaaaactggcagtgtgg	11	5	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45468632	C	C	45468632	3	2	207	1	0	0	0	0	1	0	0	0	5551	1377	48	4	2280	4	FAM179B	14	45468632	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	13825642	45468632	61880908	848	162978											
RPL10L	140801	broad.mit.edu	37	chr14	47120296	47120296	+	Nonstop_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacagtactgccaaaaccttCatgagtgcagaacccgccac	8	14	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47120296	A	A	47120296	4	1	207	1	0	0	0	0	0	0	0	0	13667	837	29	3	4	3	RPL10L	14	47120296	Nonstop_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1651664	47120296	60229244	849	162979											
MDGA2	161357	broad.mit.edu	37	chr14	47504483	47504483	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaccaatggtgatttttccTgtggaacagtcagattgggt	12	6	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47504483	A	A	47504483	3	1	207	1	0	0	0	0	1	0	0	0	9500	1580	55	5	1567	5	MDGA2	14	47504483	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	384187	47504483	59845057	850	162980											
L2HGDH	79944	broad.mit.edu	37	chr14	50750751	50750752	+	Splice_Site	DNP	CC	AA	AA													acaatcaatagccattagacCctgaaacagaattatgaaaa							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	50750752	AA	AA	50750751	5	1	207	1	0	0	0	0	0	0	1	0	8662	637	22	2	874	2	L2HGDH	14	50750751	Splice_Site	DNP	CC	TCGA-73-4668-01A-01D-1265-08	3246268	50750751	56598789	851	162981											
NID2	22795	broad.mit.edu	37	chr14	52508632	52508632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttagacgaaatcactgCctttcaaaaatcagtgatgt	6	8	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52508632	A	A	52508632	1	1	207	0	1	0	0	0	0	0	0	0	10510	754	26	3		3	NID2	14	52508632	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1757881	52508632	54840908	852	162982											
WDHD1	11169	broad.mit.edu	37	chr14	55475024	55475024	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaactttaaatttaaattgCtgagtttacctgatctgaaa	5	5	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55475024	A	A	55475024	1	1	207	0	1	0	0	0	0	0	0	0	17398	812	28	3		3	WDHD1	14	55475024	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2966392	55475024	51874516	853	162983											
WDHD1	11169	broad.mit.edu	37	chr14	55475401	55475401	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaatgttttctgttggctGctatccatcacatccacaat	6	11	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55475401	T	T	55475401	3	4	207	1	0	0	0	0	1	0	0	0	17398	1310	46	3	3099	3	WDHD1	14	55475401	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	377	55475401	51874139	854	162984											
RTN1	6252	broad.mit.edu	37	chr14	60069870	60069870	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaaaaaataatgagcAtatccaaagatgatgaggtc	8	4	0	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60069870	T	T	60069870	1	4	207	0	1	0	0	0	0	0	0	0	13836	232	8	5		5	RTN1	14	60069870	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	4594469	60069870	47279670	855	162985											
SLC38A6	145389	broad.mit.edu	37	chr14	61519096	61519096	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctcatctttggaattttGgttgggaattttagtttagc	10	4	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61519096	C	C	61519096	3	2	207	1	0	0	0	0	1	0	0	0	14722	1339	47	4	1382	4	SLC38A6	14	61519096	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1449226	61519096	45830444	856	162986											
MTHFD1	4522	broad.mit.edu	37	chr14	64894233	64894233	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtggtgacaggggacctgCttctccttcagtcctcccag	13	13	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64894233	T	T	64894233	1	4	207	0	1	0	0	0	0	0	0	0	10021	812	28	4		4	MTHFD1	14	64894233	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3375137	64894233	42455307	857	162987											
TMEM229B	161145	broad.mit.edu	37	chr14	67940629	67940629	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacagcgccgtcaggggctcGgcagacgccatggcgccgac	16	15	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67940629	C	C	67940629	2	2	207	1	0	0	0	0	0	0	0	1	16271	1103	39	4		4	TMEM229B	14	67940629	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	3046396	67940629	39408911	858	162988											
ACTN1	87	broad.mit.edu	37	chr14	69346732	69346732	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcatctgctcctggctgaTgcccttggcatcccgggtca	10	14	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69346732	A	A	69346732	3	1	207	1	0	0	0	0	1	0	0	0	204	1464	51	5	537	5	ACTN1	14	69346732	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	1406103	69346732	38002808	859	162989											
GALNTL1	57452	broad.mit.edu	37	chr14	69799690	69799690	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaatgaaggagggactgcaCgaagagcccagggctctgat	15	9	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69799690	A	A	69799690	1	1	207	0	1	0	0	0	0	0	0	0	6283	551	19	3		3	GALNTL1	14	69799690	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	452958	69799690	37549850	860	162990											
RGS6	9628	broad.mit.edu	37	chr14	72936675	72936675	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtcgatgtgctaatttacGatgattaatgccgccttgtt	10	7	0	1	rs148401304	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72936675	A	A	72936675	1	1	207	0	1	0	0	0	0	0	0	0	13418	1073	37	4		4	RGS6	14	72936675	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3136985	72936675	34412865	861	162991											
ZFYVE1	53349	broad.mit.edu	37	chr14	73445058	73445058	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctcaagcaatctgccCgatctcaggagttcgagatc	11	12	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73445058	G	G	73445058	1	3	207	0	1	0	0	0	0	0	0	0	17789	667	23	4		4	ZFYVE1	14	73445058	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	508383	73445058	33904482	862	162992											
LTBP2	4053	broad.mit.edu	37	chr14	75078484	75078484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggtagctgcccccagggCgccgcagtcgattcgcgtct	14	16	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75078484	A	A	75078484	3	1	207	1	0	0	0	0	1	0	0	0	9161	768	27	3	5445	3	LTBP2	14	75078484	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1633426	75078484	32271056	863	162993											
VIPAR	63894	broad.mit.edu	37	chr14	77904245	77904245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacaaaaagcagaaaaaggCtttgaggtattttgtctcct	8	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77904245	A	A	77904245	1	1	207	0	1	0	0	0	0	0	0	0	17295	812	28	3		3	VIPAR	14	77904245	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2825761	77904245	29445295	864	162994											
TTC7B	145567	broad.mit.edu	37	chr14	91084442	91084442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggctcaagccacagagtccCcatcccagcaagacaagtgg	10	15	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91084442	A	A	91084442	1	1	207	0	1	0	0	0	0	0	0	0	16839	638	22	2		2	TTC7B	14	91084442	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	13180197	91084442	16265098	865	162995											
MOAP1	64112	broad.mit.edu	37	chr14	93649561	93649561	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attaccttccaatattgcctGgagaagggcctcctcctcct	7	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93649561	A	A	93649561	4	1	207	1	0	0	0	0	0	1	0	0	9774	1357	47	4	32	4	MOAP1	14	93649561	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2565119	93649561	13699979	866	162996											
CCNK	8812	broad.mit.edu	37	chr14	99973371	99973371	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatgacatgcttattcatgtGaagaagtatgagtggttttc	10	4	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99973371	T	T	99973371	1	4	207	0	1	0	0	0	0	0	0	0	2960	1305	45	3		3	CCNK	14	99973371	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6323810	99973371	7376169	867	162997											
CYP46A1	10858	broad.mit.edu	37	chr14	100166391	100166391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccgaatgcaactatgaGcgctggcacaagcagcggag	14	10	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100166391	T	T	100166391	3	4	207	1	0	0	0	0	1	0	0	0	4215	962	34	3	414	3	CYP46A1	14	100166391	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	193020	100166391	7183149	868	162998											
C14orf68	283600	broad.mit.edu	37	chr14	100795657	100795658	+	Intron	DNP	CG	TT	TT													ccagggtgcgctgccctgggCgccccgatcaggctcccagt							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	100795658	TT	TT	100795657	1	4	207	0	1	0	0	0	0	0	0	0	1791	783	27	4		4	C14orf68	14	100795657	Intron	DNP	CG	TCGA-73-4668-01A-01D-1265-08	629266	100795657	6553883	869	162999											
BRF1	2972	broad.mit.edu	37	chr14	105685408	105685408	+	Intron	SNP	G	A	A													tttctaaaagttcagaaaggGggccagcgtcactgagggcc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105685408	A	A	105685408	1	1	207	0	1	0	0	0	0	0	0	0	1519	1247	43	4		4	BRF1	14	105685408	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4889751	105685408	1664132	870	163000	688	2									
BRF1	2972	broad.mit.edu	37	chr14	105685410	105685410	+	Intron	SNP	G	C	C													tctaaaagttcagaaaggggGccagcgtcactgagggccca							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105685410	C	C	105685410	1	2	207	0	1	0	0	0	0	0	0	0	1519	1218	42	4		4	BRF1	14	105685410	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2	105685410	1664130	871	163001	688	2									
SNRPN	6638	broad.mit.edu	37	chr15	25200236	25200236	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccggtggcttctctcaAgagacagcctggggagcggc	16	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25200236	G	G	25200236	1	3	207	0	1	0	0	0	0	0	0	0	14984	87	3	5		5	SNRPN	15	25200236	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08		25200236	77331156	872	163002											
UBE3A	7337	broad.mit.edu	37	chr15	25650634	25650634	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagcttcaatgtcgtcagaCtgaggttctcctgatctgta	9	10	4	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25650634	A	A	25650634	3	1	207	1	0	0	0	0	1	0	0	0	17005	564	20	3	2622	3	UBE3A	15	25650634	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	450398	25650634	76880758	873	163003											
ATP10A	57194	broad.mit.edu	37	chr15	25936908	25936908	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacacccacatctgccaccTggatcatgctgacatcattg	6	16	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25936908	A	A	25936908	3	1	207	1	0	0	0	0	1	0	0	0	1120	1580	55	5	1408	5	ATP10A	15	25936908	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	286274	25936908	76594484	874	163004											
MTMR15	22909	broad.mit.edu	37	chr15	31222813	31222813	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcacctggctgctgactttcGacactgtcgagggggcctcc	13	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31222813	A	A	31222813	3	1	207	1	0	0	0	0	1	0	0	0	10037	1058	37	4	2926	4	MTMR15	15	31222813	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	5285905	31222813	71308579	875	163005											
RYR3	6263	broad.mit.edu	37	chr15	33842358	33842358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtctgtttcatctgccCagctggagtggcagtaacat	10	10	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33842358	A	A	33842358	1	1	207	0	1	0	0	0	0	0	0	0	13881	609	21	2		2	RYR3	15	33842358	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2619545	33842358	68689034	876	163006											
RYR3	6263	broad.mit.edu	37	chr15	33936616	33936616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtgcggtctccaagagGgctttgagccttttgctgtc	12	11	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33936616	T	T	33936616	3	4	207	1	0	0	0	0	1	0	0	0	13881	1232	43	2	3771	2	RYR3	15	33936616	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	94258	33936616	68594776	877	163007											
RYR3	6263	broad.mit.edu	37	chr15	33936743	33936743	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgttacacaatgtgtgtgGccctggcaggtcaggtgggc	15	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33936743	C	C	33936743	1	2	207	0	1	0	0	0	0	0	0	0	13881	1218	42	4		4	RYR3	15	33936743	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	127	33936743	68594649	878	163008											
RYR3	6263	broad.mit.edu	37	chr15	34016338	34016338	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attatgtcattttattcggcCcttatagatctactgggccg	8	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34016338	G	G	34016338	2	3	207	1	0	0	0	0	0	0	0	1	13881	610	22	4		4	RYR3	15	34016338	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	79595	34016338	68515054	879	163009											
AQR	9716	broad.mit.edu	37	chr15	35240475	35240475	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatcagttacctcccatgcaGgcacgttttctctaaacttc	5	13	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35240475	C	C	35240475	3	2	207	1	0	0	0	0	1	0	0	0	837	1000	35	4	4261	4	AQR	15	35240475	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1224137	35240475	67290917	880	163010											
CASC5	57082	broad.mit.edu	37	chr15	40901118	40901118	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactataaagtaagttgaaaGcagaaataactaaaatatta	5	3	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40901118	A	A	40901118	1	1	207	0	1	0	0	0	0	0	0	0	2689	986	34	4		4	CASC5	15	40901118	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5660643	40901118	61630274	881	163011											
RHOV	171177	broad.mit.edu	37	chr15	41165980	41165980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcctgagttaggaagagCgtcctgggccgcaccagcgc	15	12	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41165980	A	A	41165980	1	1	207	0	1	0	0	0	0	0	0	0	13455	783	27	3		3	RHOV	15	41165980	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	264862	41165980	61365412	882	163012											
MGA	23269	broad.mit.edu	37	chr15	42032402	42032402	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaaaacggccaattgGtaagttggggtgtatgtatg	13	7	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42032402	T	T	42032402	5	4	207	1	0	0	0	0	0	0	1	0	9633	1275	44	3	4636	3	MGA	15	42032402	Splice_Site	SNP	G	TCGA-73-4668-01A-01D-1265-08	866422	42032402	60498990	883	163013											
PLA2G4F	255189	broad.mit.edu	37	chr15	42437893	42437893	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacatacctaaggagacagGcaggcccccaccccacgtca	8	18	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42437893	A	A	42437893	1	1	207	0	1	0	0	0	0	0	0	0	12101	1218	42	4		4	PLA2G4F	15	42437893	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	405491	42437893	60093499	884	163014											
TRIM69	140691	broad.mit.edu	37	chr15	45052208	45052208	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccaaaaggaggctagttGgtatgactgaatttcttcta	11	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45052208	T	T	45052208	1	4	207	0	1	0	0	0	0	0	0	0	16667	1363	47	2		2	TRIM69	15	45052208	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2614315	45052208	57479184	885	163015											
TLN2	83660	broad.mit.edu	37	chr15	63014513	63014513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctctctacctcttgctGcccaggagccatcttacttt	5	16	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63014513	T	T	63014513	1	4	207	0	1	0	0	0	0	0	0	0	16071	1334	46	3		3	TLN2	15	63014513	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	17962305	63014513	39516879	886	163016											
ZNF609	23060	broad.mit.edu	37	chr15	64966474	64966474	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgggctcagccactggccCccttcctgggacaaaggtag	12	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64966474	T	T	64966474	3	4	207	1	0	0	0	0	1	0	0	0	18162	623	22	4	1435	4	ZNF609	15	64966474	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1951961	64966474	37564918	887	163017											
CLN6	54982	broad.mit.edu	37	chr15	68504182	68504182	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggagcgtggcagggtgCggggggaccgctcgatgagc	21	8	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68504182	A	A	68504182	3	1	207	1	0	0	0	0	1	0	0	0	3577	768	27	3	634	3	CLN6	15	68504182	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3537708	68504182	34027210	888	163018											
TLE3	7090	broad.mit.edu	37	chr15	70368533	70368533	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccacatgaagctcaggcaAataaatcaagtcactgaaat	7	9	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70368533	C	C	70368533	1	2	207	0	1	0	0	0	0	0	0	0	16063	29	1	5		5	TLE3	15	70368533	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	1864351	70368533	32162859	889	163019											
UACA	55075	broad.mit.edu	37	chr15	70959250	70959250	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcatgcaaaacttcctcaCatacttcctcatactttcta	3	13	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70959250	G	G	70959250	3	3	207	1	0	0	0	0	1	0	0	0	16950	478	17	4	493	4	UACA	15	70959250	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	590717	70959250	31572142	890	163020											
CYP1A1	1543	broad.mit.edu	37	chr15	75013543	75013543	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccatggggccttacctgTgggggatggtgaaggggacg	19	8	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75013543	C	C	75013543	3	2	207	1	0	0	0	0	1	0	0	0	4182	1696	59	5	387	5	CYP1A1	15	75013543	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	4054293	75013543	27517849	891	163021											
C15orf27	123591	broad.mit.edu	37	chr15	76495979	76495979	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcacggtctcctacagccTagccacactcattgcccacc	7	18	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76495979	A	A	76495979	1	1	207	0	1	0	0	0	0	0	0	0	1801	1537	53	5		5	C15orf27	15	76495979	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1482436	76495979	26035413	892	163022											
AGPHD1	123688	broad.mit.edu	37	chr15	78807396	78807396	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcttcccgtcagccccCagctattgtatgaaattgga	9	12	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78807396	T	T	78807396	4	4	207	1	0	0	0	0	0	1	0	0	393	595	21	4	430	4	AGPHD1	15	78807396	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2311417	78807396	23723996	893	163023											
AP3B2	8120	broad.mit.edu	37	chr15	83333147	83333147	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctctccctttctcctcatCctcatcctggtcttcattgt	4	17	6	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83333147	G	G	83333147	3	3	207	1	0	0	0	0	1	0	0	0	747	855	30	4	1108	4	AP3B2	15	83333147	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4525751	83333147	19198245	894	163024											
RAB11FIP3	9727	broad.mit.edu	37	chr16	546698	546698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggacttgcctggggggcCctgcatgccgggagcattgc	16	12	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	546698	T	T	546698	1	4	207	0	1	0	0	0	0	0	0	0	13003	638	22	4		4	RAB11FIP3	16	546698	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08		546698	89808055	895	163025											
SOLH	6650	broad.mit.edu	37	chr16	596761	596761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggccgagaggagggtgGggtccagccactcaggacct	16	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	596761	T	T	596761	1	4	207	0	1	0	0	0	0	0	0	0	15039	1247	43	2		2	SOLH	16	596761	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	50063	596761	89757992	896	163026											
SSTR5	6755	broad.mit.edu	37	chr16	1129274	1129274	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctgacagtcatgagcgtgGaccgctacctggcagtggtg	15	11	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1129274	T	T	1129274	3	4	207	1	0	0	0	0	1	0	0	0	15319	1174	41	3	408	3	SSTR5	16	1129274	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	532513	1129274	89225479	897	163027											
BAIAP3	8938	broad.mit.edu	37	chr16	1398189	1398189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaccaacgacttcgctgGggaggcggccctcggcctag	14	15	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1398189	T	T	1398189	3	4	207	1	0	0	0	0	1	0	0	0	1309	1232	43	2	3477	2	BAIAP3	16	1398189	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	268915	1398189	88956564	898	163028											
ABCA3	21	broad.mit.edu	37	chr16	2348616	2348616	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcggtaatgaccccccacCccctctctgtctcccctaat	5	21	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2348616	T	T	2348616	1	4	207	0	1	0	0	0	0	0	0	0	33	638	22	4		4	ABCA3	16	2348616	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	950427	2348616	88006137	899	163029											
SRRM2	23524	broad.mit.edu	37	chr16	2812488	2812488	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacgctctagaaccccagcTagacgtggccgctcacgctc	9	17	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2812488	C	C	2812488	2	2	207	1	0	0	0	0	0	0	0	1	15287	1509	53	5		5	SRRM2	16	2812488	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	463872	2812488	87542265	900	163030											
THOC6	79228	broad.mit.edu	37	chr16	3076161	3076161	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggctttgggcggagatgctCaagaaggtaaggagtcgagc	17	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3076161	A	A	3076161	2	1	207	1	0	0	0	0	0	0	0	1	15992	813	29	3		3	THOC6	16	3076161	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	263673	3076161	87278592	901	163031											
ZNF75A	7627	broad.mit.edu	37	chr16	3363302	3363302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctagatggtataggggaGggtgtaggtagtgtatccag	16	4	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3363302	T	T	3363302	1	4	207	0	1	0	0	0	0	0	0	0	18262	1015	35	2		2	ZNF75A	16	3363302	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	287141	3363302	86991451	902	163032											
NLRC3	197358	broad.mit.edu	37	chr16	3600384	3600384	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactggaaagagaacccaggGggaatcgtcaccctggcagg	14	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3600384	T	T	3600384	1	4	207	0	1	0	0	0	0	0	0	0	10563	1247	43	2		2	NLRC3	16	3600384	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	237082	3600384	86754369	903	163033											
NLRC3	197358	broad.mit.edu	37	chr16	3613765	3613765	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaccatcttgcggccaccAtgggccacctgctcgatgcg	10	18	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3613765	G	G	3613765	2	3	207	1	0	0	0	0	0	0	0	1	10563	214	8	5		5	NLRC3	16	3613765	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	13381	3613765	86740988	904	163034											
GLYR1	84656	broad.mit.edu	37	chr16	4861915	4861915	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaggggaggcccccttcaCctgcccccgacagactggct	11	18	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4861915	G	G	4861915	1	3	207	0	1	0	0	0	0	0	0	0	6547	522	18	4		4	GLYR1	16	4861915	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1248150	4861915	85492838	905	163035											
GRIN2A	2903	broad.mit.edu	37	chr16	9923360	9923360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagattggctgtgtagctagCcaggaatatgacagcgaaga	13	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9923360	A	A	9923360	3	1	207	1	0	0	0	0	1	0	0	0	6845	739	26	3	2487	3	GRIN2A	16	9923360	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	5061445	9923360	80431393	906	163036											
PDXDC1	23042	broad.mit.edu	37	chr16	15230634	15230634	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accggtgggaatgagggtgtCaacggtcagtgtgggcccaa	17	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15230634	A	A	15230634	1	1	207	0	1	0	0	0	0	0	0	0	11790	841	29	3		3	PDXDC1	16	15230634	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	5307274	15230634	75124119	907	163037											
SMG1	23049	broad.mit.edu	37	chr16	18908270	18908270	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatctgggtcggctgatgcaCtatcagttctataaaaagag	10	7	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18908270	G	G	18908270	3	3	207	1	0	0	0	0	1	0	0	0	14909	565	20	4	11132	4	SMG1	16	18908270	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3677636	18908270	71446483	908	163038											
COQ7	10229	broad.mit.edu	37	chr16	19078933	19078933	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcatcagtccgagccaagGgcactattggccagttccgt	11	13	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19078933	T	T	19078933	1	4	207	0	1	0	0	0	0	0	0	0	3782	1247	43	2		2	COQ7	16	19078933	5'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	170663	19078933	71275820	909	163039											
COQ7	10229	broad.mit.edu	37	chr16	19086859	19086859	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacttagttggcactgctGgcatctagttggtagaggtc	12	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19086859	T	T	19086859	1	4	207	0	1	0	0	0	0	0	0	0	3782	1363	47	2		2	COQ7	16	19086859	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	7926	19086859	71267894	910	163040											
TMC5	79838	broad.mit.edu	37	chr16	19498264	19498264	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactcaccctctctccctcaCaggattggcatcttcttctg	5	17	6	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19498264	G	G	19498264	1	3	207	0	1	0	0	0	0	0	0	0	16111	493	17	4		4	TMC5	16	19498264	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	411405	19498264	70856489	911	163041											
UMOD	7369	broad.mit.edu	37	chr16	20355580	20355580	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacttcaaagctaaatctgCtggtctcatgtctggctact	9	10	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20355580	A	A	20355580	1	1	207	0	1	0	0	0	0	0	0	0	17105	812	28	3		3	UMOD	16	20355580	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	857316	20355580	69999173	912	163042											
UMOD	7369	broad.mit.edu	37	chr16	20359896	20359896	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgcaggccttgcggctcaCgatgccctcgtcgctggacg	14	16	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20359896	T	T	20359896	3	4	207	1	0	0	0	0	1	0	0	0	17105	536	19	4	1231	4	UMOD	16	20359896	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	4316	20359896	69994857	913	163043											
UMOD	7369	broad.mit.edu	37	chr16	20360574	20360574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcagggtttgggcagctGggcccatggccacccagaga	15	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20360574	T	T	20360574	1	4	207	0	1	0	0	0	0	0	0	0	17105	1363	47	2		2	UMOD	16	20360574	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	678	20360574	69994179	914	163044											
ACSM2A	123876	broad.mit.edu	37	chr16	20471395	20471395	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtagagcaatctgttaaagAagctctcacctgtgtctctt	8	9	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20471395	T	T	20471395	1	4	207	0	1	0	0	0	0	0	0	0	183	261	9	5		5	ACSM2A	16	20471395	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	110821	20471395	69883358	915	163045											
DNAH3	55567	broad.mit.edu	37	chr16	21092771	21092771	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcacaacccatcagcagctCtgcagctaaaaaacagaagc	7	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21092771	T	T	21092771	1	4	207	0	1	0	0	0	0	0	0	0	4643	928	32	4		4	DNAH3	16	21092771	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	621376	21092771	69261982	916	163046											
EEF2K	29904	broad.mit.edu	37	chr16	22276209	22276209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctctggacgggtaatgcGccctgaggcacccttgtctc	12	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22276209	T	T	22276209	1	4	207	0	1	0	0	0	0	0	0	0	4970	1102	38	3		3	EEF2K	16	22276209	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1183438	22276209	68078544	917	163047											
CDR2	1039	broad.mit.edu	37	chr16	22385529	22385529	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggccaggccgccgcccgcCcgcggggcgcccccgccctc	15	24	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22385529	A	A	22385529	1	1	207	0	1	0	0	0	0	0	0	0	3202	638	22	2		2	CDR2	16	22385529	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	109320	22385529	67969224	918	163048											
LCMT1	51451	broad.mit.edu	37	chr16	25182152	25182152	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gggttggtgagcgtcagcttGatgggcattcattgtgaact	15	6	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25182152	A	A	25182152	1	1	207	0	1	0	0	0	0	0	0	0	8750	1305	45	4		4	LCMT1	16	25182152	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2796623	25182152	65172601	919	163049											
KIAA0556	23247	broad.mit.edu	37	chr16	27781094	27781094	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccccatggtgagcacaGctgccagcagctccggtcac	12	16	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27781094	T	T	27781094	1	4	207	0	1	0	0	0	0	0	0	0	8253	986	34	3		3	KIAA0556	16	27781094	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2598942	27781094	62573659	920	163050											
XPO6	23214	broad.mit.edu	37	chr16	28137079	28137079	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgataaagtactcggccaggCggcccacggcctgcagcagg	14	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28137079	A	A	28137079	3	1	207	1	0	0	0	0	1	0	0	0	17575	768	27	3	1728	3	XPO6	16	28137079	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	355985	28137079	62217674	921	163051											
QPRT	23475	broad.mit.edu	37	chr16	29708382	29708382	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagtggaatgcagcagcctGcaggaggccgtgcaggcagc	17	10	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29708382	C	C	29708382	2	2	207	1	0	0	0	0	0	0	0	1	12984	1306	46	4		4	QPRT	16	29708382	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1571303	29708382	60646371	922	163052											
PRR14	78994	broad.mit.edu	37	chr16	30666091	30666091	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgacatcttcctcacgcCcaacaaaaccccacagcccc	4	20	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30666091	T	T	30666091	3	4	207	1	0	0	0	0	1	0	0	0	12692	623	22	4	826	4	PRR14	16	30666091	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	957709	30666091	59688662	923	163053											
ZNF668	79759	broad.mit.edu	37	chr16	31072581	31072581	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtttgcgcagcccagcCcggtcagagaagctcttgcc	12	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31072581	A	A	31072581	2	1	207	1	0	0	0	0	0	0	0	1	18202	610	22	2		2	ZNF668	16	31072581	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	406490	31072581	59282172	924	163054											
ITGAD	3681	broad.mit.edu	37	chr16	31405493	31405493	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaagaaaaagaggctGggaggtcctagggattgggg	16	3	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31405493	T	T	31405493	1	4	207	0	1	0	0	0	0	0	0	0	7954	1363	47	2		2	ITGAD	16	31405493	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	332912	31405493	58949260	925	163055											
ITGAD	3681	broad.mit.edu	37	chr16	31424098	31424098	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acctccatattccccttgttActtatttccaacttcttccc	1	16	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31424098	T	T	31424098	1	4	207	0	1	0	0	0	0	0	0	0	7954	406	14	5		5	ITGAD	16	31424098	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	18605	31424098	58930655	926	163056											
C16orf58	64755	broad.mit.edu	37	chr16	31505167	31505167	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagctggggttctcctgcCcaccctgcttccggcttacc	9	19	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31505167	G	G	31505167	1	3	207	0	1	0	0	0	0	0	0	0	1836	638	22	4		4	C16orf58	16	31505167	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	81069	31505167	58849586	927	163057											
SHCBP1	79801	broad.mit.edu	37	chr16	46655362	46655362	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgaggccgtggaccaattaGagtccggccccgctccagcc	12	17	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46655362	T	T	46655362	1	4	207	0	1	0	0	0	0	0	0	0	14387	957	33	3		3	SHCBP1	16	46655362	5'Flank	SNP	G	TCGA-73-4668-01A-01D-1265-08	15150195	46655362	43699391	928	163058											
PHKB	5257	broad.mit.edu	37	chr16	47581459	47581459	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcacagagctacattcgaGgtaatttgctgatttctgag	10	8	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47581459	C	C	47581459	3	2	207	1	0	0	0	0	1	0	0	0	11940	1014	35	4	795	4	PHKB	16	47581459	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	926097	47581459	42773294	929	163059											
ADCY7	113	broad.mit.edu	37	chr16	50325758	50325758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccacctcctggtgctcGgttctttgatgggaggcttc	11	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50325758	T	T	50325758	3	4	207	1	0	0	0	0	1	0	0	0	299	1116	39	1	497	1	ADCY7	16	50325758	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2744299	50325758	40028995	930	163060											
ADCY7	113	broad.mit.edu	37	chr16	50338951	50338951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcagcctctgtccagtGggcagctccgcaaggcccag	13	15	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50338951	T	T	50338951	1	4	207	0	1	0	0	0	0	0	0	0	299	1363	47	2		2	ADCY7	16	50338951	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	13193	50338951	40015802	931	163061											
CES7	221223	broad.mit.edu	37	chr16	55908877	55908877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatcttctgtgcgctaccCactcccaagaaggaagctct	9	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55908877	A	A	55908877	1	1	207	0	1	0	0	0	0	0	0	0	3302	609	21	2		2	CES7	16	55908877	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	5569926	55908877	34445876	932	163062											
MT1E	4493	broad.mit.edu	37	chr16	56660696	56660696	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgaaaaaaagcatcctctGggtctgggttctgagctcga	12	9	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56660696	T	T	56660696	1	4	207	0	1	0	0	0	0	0	0	0	9993	1363	47	2		2	MT1E	16	56660696	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	751819	56660696	33694057	933	163063											
NLRC5	84166	broad.mit.edu	37	chr16	57077623	57077623	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgccaacctgtcatccTcagcaccttgggcagtacca	7	15	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57077623	A	A	57077623	1	1	207	0	1	0	0	0	0	0	0	0	10565	1566	54	5		5	NLRC5	16	57077623	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	416927	57077623	33277130	934	163064											
NLRC5	84166	broad.mit.edu	37	chr16	57111434	57111434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggctcggtgacctcctgGccctcactgcgggaccttaa	13	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57111434	T	T	57111434	1	4	207	0	1	0	0	0	0	0	0	0	10565	1218	42	3		3	NLRC5	16	57111434	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	33811	57111434	33243319	935	163065											
CIAPIN1	57019	broad.mit.edu	37	chr16	57474532	57474532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attattgggggtggttcctcCgatatatctcaactgaaaaa	9	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57474532	A	A	57474532	1	1	207	0	1	0	0	0	0	0	0	0	3450	667	23	1		1	CIAPIN1	16	57474532	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	363098	57474532	32880221	936	163066											
CSNK2A2	1459	broad.mit.edu	37	chr16	58197952	58197952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggcaagcatcaatgccgCattacccgtcgctttccagt	8	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58197952	A	A	58197952	1	1	207	0	1	0	0	0	0	0	0	0	3992	725	25	3		3	CSNK2A2	16	58197952	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	723420	58197952	32156801	937	163067											
CDH8	1006	broad.mit.edu	37	chr16	61747993	61747993	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttcagctttctaaattgTcatggatggtttgtgccaag	9	6	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61747993	A	A	61747993	1	1	207	0	1	0	0	0	0	0	0	0	3146	1682	58	5		5	CDH8	16	61747993	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	3550041	61747993	28606760	938	163068											
FAM65A	79567	broad.mit.edu	37	chr16	67574538	67574538	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggccgaattgagggtagTggaaagcaggtgtgggacag	20	5	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67574538	C	C	67574538	2	2	207	1	0	0	0	0	0	0	0	1	5650	1693	59	5		5	FAM65A	16	67574538	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	5826545	67574538	22780215	939	163069											
FUK	197258	broad.mit.edu	37	chr16	70509544	70509544	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgctctctcctctccgcCctgcaggcaccagcagcatc	8	19	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70509544	A	A	70509544	1	1	207	0	1	0	0	0	0	0	0	0	6156	638	22	2		2	FUK	16	70509544	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2935006	70509544	19845209	940	163070											
SF3B3	23450	broad.mit.edu	37	chr16	70566338	70566338	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgtcctttccagatcttcGattttatgctgatgattagt	8	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70566338	T	T	70566338	1	4	207	0	1	0	0	0	0	0	0	0	14265	1073	37	3		3	SF3B3	16	70566338	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	56794	70566338	19788415	941	163071											
HYDIN	54768	broad.mit.edu	37	chr16	71008233	71008233	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaaaaaaaaatttcttcaTggaaaagagaaacagcaaac	6	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71008233	C	C	71008233	1	2	207	0	1	0	0	0	0	0	0	0	7537	1479	51	5		5	HYDIN	16	71008233	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	441895	71008233	19346520	942	163072											
PHLPP2	23035	broad.mit.edu	37	chr16	71715787	71715787	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaacacgagagatccacggTactgattcgctgggacacca	11	11	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71715787	A	A	71715787	3	1	207	1	0	0	0	0	1	0	0	0	11950	1638	57	5	3270	5	PHLPP2	16	71715787	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	707554	71715787	18638966	943	163073											
DHODH	1723	broad.mit.edu	37	chr16	72040303	72040303	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttaagcctgaagaaaactCtaccatttcttctgcttgga	6	10	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72040303	A	A	72040303	1	1	207	0	1	0	0	0	0	0	0	0	4524	928	32	3		3	DHODH	16	72040303	5'Flank	SNP	C	TCGA-73-4668-01A-01D-1265-08	324516	72040303	18314450	944	163074											
WDR59	79726	broad.mit.edu	37	chr16	74927609	74927609	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcgatttgtgaacaggCaggaggcaagcaatatcctg	12	10	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74927609	A	A	74927609	2	1	207	1	0	0	0	0	0	0	0	1	17435	697	25	3		3	WDR59	16	74927609	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2887306	74927609	15427144	945	163075											
ADAT1	23536	broad.mit.edu	37	chr16	75642252	75642252	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagattctagggttaaaaCtgctcaatttcttgtgaaag	8	5	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75642252	A	A	75642252	1	1	207	0	1	0	0	0	0	0	0	0	284	580	20	3		3	ADAT1	16	75642252	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	714643	75642252	14712501	946	163076											
CNTNAP4	85445	broad.mit.edu	37	chr16	76481991	76481991	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagcccaataaaagacatTatttctttgaaattcaaaac	4	8	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76481991	A	A	76481991	2	1	207	1	0	0	0	0	0	0	0	1	3681	1742	61	5		5	CNTNAP4	16	76481991	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	839739	76481991	13872762	947	163077											
CNTNAP4	85445	broad.mit.edu	37	chr16	76528697	76528697	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaatccaatcaatctttctCcttttctccttttattcttt	0	11	5	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76528697	A	A	76528697	1	1	207	0	1	0	0	0	0	0	0	0	3681	870	30	3		3	CNTNAP4	16	76528697	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	46706	76528697	13826056	948	163078											
ADAMTS18	170692	broad.mit.edu	37	chr16	77398154	77398154	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttccaccattttcttgtcTgccaccacgagggtttccac	6	14	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77398154	A	A	77398154	2	1	207	1	0	0	0	0	0	0	0	1	263	1567	55	5		5	ADAMTS18	16	77398154	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	869457	77398154	12956599	949	163079											
WFDC1	58189	broad.mit.edu	37	chr16	84357953	84357953	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacacaagtaattcctcAgtgttattatgacaacagtt	5	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84357953	G	G	84357953	1	3	207	0	1	0	0	0	0	0	0	0	17473	203	7	5		5	WFDC1	16	84357953	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	6959799	84357953	5996800	950	163080											
KIAA0182	23199	broad.mit.edu	37	chr16	85706146	85706146	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagggatatcccaggtgaCggtttcccttgcactaggcc	12	11	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85706146	T	T	85706146	1	4	207	0	1	0	0	0	0	0	0	0	8229	551	19	4		4	KIAA0182	16	85706146	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	1348193	85706146	4648607	951	163081											
ZC3H18	124245	broad.mit.edu	37	chr16	88688817	88688817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggagggctcgtgggacGgctggggtgtcagcaccttg	19	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88688817	T	T	88688817	1	4	207	0	1	0	0	0	0	0	0	0	17694	1131	39	1		1	ZC3H18	16	88688817	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2982671	88688817	1665936	952	163082											
TRPV3	162514	broad.mit.edu	37	chr17	3417247	3417247	+	Frame_Shift_Del	DEL	A	-	-													gggaattcctcgacttcttcAaatgcattgagagtggtttt							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3417247	-	-	3417247	7	5	207	1	0	1	0	1	0	0	0	0	16722	127	5	0	39	0	TRPV3	17	3417247	Frame_Shift_Del	DEL	A	TCGA-73-4668-01A-01D-1265-08		3417247	77777963	953	163083											
CTNS	1497	broad.mit.edu	37	chr17	3552109	3552109	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagatctcactgtccagcttCtcagcagtaattagactctt	7	11	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3552109	A	A	3552109	1	1	207	0	1	0	0	0	0	0	0	0	4055	928	32	3		3	CTNS	17	3552109	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	134862	3552109	77643101	954	163084											
ITGAE	3682	broad.mit.edu	37	chr17	3634499	3634499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tattttaaagggggaaaaatGgtcagttgattctctctatg	10	4	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3634499	T	T	3634499	1	4	207	0	1	0	0	0	0	0	0	0	7955	1363	47	2		2	ITGAE	17	3634499	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	82390	3634499	77560711	955	163085											
ZZEF1	23140	broad.mit.edu	37	chr17	3961350	3961350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgaggagatctggtaaCtgaatatcaacaaagaaggc	10	6	3	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3961350	A	A	3961350	3	1	207	1	0	0	0	0	1	0	0	0	18384	564	20	3	3878	3	ZZEF1	17	3961350	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	326851	3961350	77233860	956	163086											
MYBBP1A	10514	broad.mit.edu	37	chr17	4446447	4446447	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagtagcgccgggcacGgcacaggtggtgcctgtggg	20	10	0	0	rs148844016	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4446447	A	A	4446447	3	1	207	1	0	0	0	0	1	0	0	0	10102	1116	39	4	1401	4	MYBBP1A	17	4446447	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	485097	4446447	76748763	957	163087											
TEKT1	83659	broad.mit.edu	37	chr17	6703940	6703940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggagacttccctctagggGgcattcctcaagcattccag	11	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6703940	A	A	6703940	1	1	207	0	1	0	0	0	0	0	0	0	15874	1247	43	4		4	TEKT1	17	6703940	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2257493	6703940	74491270	958	163088											
ARHGEF15	22899	broad.mit.edu	37	chr17	8221893	8221893	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctccccttacctagatcatCgagcgttgcagcgctgaggt	11	13	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8221893	A	A	8221893	2	1	207	1	0	0	0	0	0	0	0	1	900	874	31	3		3	ARHGEF15	17	8221893	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	1517953	8221893	72973317	959	163089											
MYH4	4622	broad.mit.edu	37	chr17	10355230	10355230	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgaattgttgcaaataaaGatgaaaagggcacaagttaa	9	3	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10355230	T	T	10355230	1	4	207	0	1	0	0	0	0	0	0	0	10131	957	33	3		3	MYH4	17	10355230	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2133337	10355230	70839980	960	163090											
DNAH9	1770	broad.mit.edu	37	chr17	11622804	11622804	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcggagcagatggattaCaaggtacagttccacccggc	12	11	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11622804	A	A	11622804	4	1	207	1	0	0	0	0	0	1	0	0	4648	489	17	3	5812	3	DNAH9	17	11622804	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1267574	11622804	69572406	961	163091											
DNAH9	1770	broad.mit.edu	37	chr17	11672669	11672669	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagcccagggcacctggGgtggggggcatctgggtggc	20	10	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11672669	T	T	11672669	1	4	207	0	1	0	0	0	0	0	0	0	4648	1247	43	2		2	DNAH9	17	11672669	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	49865	11672669	69522541	962	163092											
CDRT15	146822	broad.mit.edu	37	chr17	14140072	14140072	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagggatgagccttcttcGgcatcgtcggaaaaggctct	14	9	2	2	rs147270904	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14140072	A	A	14140072	4	1	207	1	0	0	0	0	0	1	0	0	3205	1124	39	4	497	4	CDRT15	17	14140072	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2467403	14140072	67055138	963	163093											
ZNF286A	57335	broad.mit.edu	37	chr17	15609643	15609643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggccagcagaaactgGgggatgaaagagaagtaatt	14	6	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15609643	T	T	15609643	1	4	207	0	1	0	0	0	0	0	0	0	17949	1247	43	2		2	ZNF286A	17	15609643	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1469571	15609643	65585567	964	163094											
PIGL	9487	broad.mit.edu	37	chr17	16216938	16216938	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagctgtgaggtatgattcTccgggtgatggatgtggggg	19	5	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16216938	G	G	16216938	1	3	207	0	1	0	0	0	0	0	0	0	11986	1566	54	5		5	PIGL	17	16216938	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	607295	16216938	64978272	965	163095											
RNF112	7732	broad.mit.edu	37	chr17	19317381	19317381	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccggcctctgtaatctctCatacatgttgttctctctga	6	13	5	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19317381	A	A	19317381	1	1	207	0	1	0	0	0	0	0	0	0	13537	841	29	3		3	RNF112	17	19317381	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3100443	19317381	61877829	966	163096											
MAP2K3	5606	broad.mit.edu	37	chr17	21206557	21206557	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccacagaggtcagtgcccGgcagccacccaggcacggtg	13	15	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21206557	A	A	21206557	1	1	207	0	1	0	0	0	0	0	0	0	9330	1131	39	4		4	MAP2K3	17	21206557	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1889176	21206557	59988653	967	163097											
CORO6	84940	broad.mit.edu	37	chr17	27946052	27946052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccacccacccatctatGggggacccctccttagcccc	7	21	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27946052	T	T	27946052	1	4	207	0	1	0	0	0	0	0	0	0	3790	1363	47	2		2	CORO6	17	27946052	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6739495	27946052	53249158	968	163098											
LRRC37B	114659	broad.mit.edu	37	chr17	30377039	30377039	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagctcatgaaagaagttccAggagatgactataagaacaa	9	6	1	5			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30377039	G	G	30377039	2	3	207	1	0	0	0	0	0	0	0	1	9081	175	7	5		5	LRRC37B	17	30377039	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	2430987	30377039	50818171	969	163099											
UNC45B	146862	broad.mit.edu	37	chr17	33481607	33481607	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcaggctgccaacaatctCattgtcctaggccgtgagga	10	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33481607	A	A	33481607	2	1	207	1	0	0	0	0	0	0	0	1	17115	813	29	3		3	UNC45B	17	33481607	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	3104568	33481607	47713603	970	163100											
UNC45B	146862	broad.mit.edu	37	chr17	33495370	33495370	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgagaagatcaagatccGcacactggtggtgagtgggc	14	7	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33495370	T	T	33495370	3	4	207	1	0	0	0	0	1	0	0	0	17115	1087	38	3	1476	3	UNC45B	17	33495370	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	13763	33495370	47699840	971	163101											
JUP	3728	broad.mit.edu	37	chr17	39680365	39680365	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtataagtgtgaattgcacaGggaagcggcggcggtggggg	20	5	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39680365	A	A	39680365	1	1	207	0	1	0	0	0	0	0	0	0	8042	1015	35	4		4	JUP	17	39680365	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	6184995	39680365	41514845	972	163102											
NT5C3L	115024	broad.mit.edu	37	chr17	39987052	39987052	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccagagcaagacgcttaCctgagcattgcattggactc	9	11	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39987052	A	A	39987052	5	1	207	1	0	0	0	0	0	0	1	0	10784	521	18	3	513	3	NT5C3L	17	39987052	Splice_Site	SNP	C	TCGA-73-4668-01A-01D-1265-08	306687	39987052	41208158	973	163103											
ADAM11	4185	broad.mit.edu	37	chr17	42854982	42854982	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgcaggtgctggccaggAccaagactagggaggggagg	19	8	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42854982	G	G	42854982	1	3	207	0	1	0	0	0	0	0	0	0	235	290	10	5		5	ADAM11	17	42854982	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	2867930	42854982	38340228	974	163104											
ADAM11	4185	broad.mit.edu	37	chr17	42856514	42856514	+	Intron	DEL	A	-	-													caaggggtcgcatggcagccAaaggcccctccctgagagaa							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42856514	-	-	42856514	6	5	207	0	1	1	0	1	0	0	0	0	235	145	5	0		0	ADAM11	17	42856514	Intron	DEL	A	TCGA-73-4668-01A-01D-1265-08	1532	42856514	38338696	975	163105											
PLEKHM1	9842	broad.mit.edu	37	chr17	43552535	43552535	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcacaggacatgggctccTcgcaatggtctggactcttg	12	11	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43552535	A	A	43552535	3	1	207	1	0	0	0	0	1	0	0	0	12175	1551	54	5	2352	5	PLEKHM1	17	43552535	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	696021	43552535	37642675	976	163106											
KIAA1267	284058	broad.mit.edu	37	chr17	44108914	44108914	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagggggacaatgggaggCgaggtgggcgctgcctctgt	20	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44108914	A	A	44108914	2	1	207	1	0	0	0	0	0	0	0	1	8289	755	27	3		3	KIAA1267	17	44108914	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	556379	44108914	37086296	977	163107											
GOSR2	9570	broad.mit.edu	37	chr17	45097210	45097210	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctctgtgtcctgcctgaCatggcagccttttcctggag	11	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45097210	A	A	45097210	1	1	207	0	1	0	0	0	0	0	0	0	6642	493	17	3		3	GOSR2	17	45097210	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	988296	45097210	36098000	978	163108											
SP2	6668	broad.mit.edu	37	chr17	45993411	45993411	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggcaacatgcctgccccgGaggtggggaagactggcgtg	17	11	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45993411	C	C	45993411	1	2	207	0	1	0	0	0	0	0	0	0	15078	1189	41	4		4	SP2	17	45993411	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	896201	45993411	35201799	979	163109											
HOXB8	3218	broad.mit.edu	37	chr17	46691934	46691934	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggtgctggaagctgccgcCgctgctgggaccgtacacca	15	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46691934	A	A	46691934	3	1	207	1	0	0	0	0	1	0	0	0	7374	652	23	1	606	1	HOXB8	17	46691934	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	698523	46691934	34503276	980	163110											
HOXB13	10481	broad.mit.edu	37	chr17	46805354	46805354	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccagggtaatagaggtaCctgcaaatgctgccttccaa	10	11	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46805354	A	A	46805354	1	1	207	0	1	0	0	0	0	0	0	0	7367	521	18	3		3	HOXB13	17	46805354	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	113420	46805354	34389856	981	163111											
IGF2BP1	10642	broad.mit.edu	37	chr17	47120887	47120887	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcccagcagcgttactgGggctgctccctatagctcct	10	16	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47120887	A	A	47120887	3	1	207	1	0	0	0	0	1	0	0	0	7643	1232	43	4	1213	4	IGF2BP1	17	47120887	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	315533	47120887	34074323	982	163112											
ACSF2	80221	broad.mit.edu	37	chr17	48538982	48538982	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatactgatatgccctcgcCgcttccaccaggtgtctgtg	10	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48538982	T	T	48538982	1	4	207	0	1	0	0	0	0	0	0	0	175	667	23	4		4	ACSF2	17	48538982	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1418095	48538982	32656228	983	163113											
CACNA1G	8913	broad.mit.edu	37	chr17	48695178	48695178	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccagctgtctggccggGgacccaaagaggccagctca	13	14	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48695178	T	T	48695178	1	4	207	0	1	0	0	0	0	0	0	0	2570	1247	43	2		2	CACNA1G	17	48695178	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	156196	48695178	32500032	984	163114											
C17orf67	339210	broad.mit.edu	37	chr17	54893250	54893250	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaggaagccatgccaggCcctgcgcttgtttatgcttt	11	10	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54893250	A	A	54893250	1	1	207	0	1	0	0	0	0	0	0	0	1891	753	26	3		3	C17orf67	17	54893250	5'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	6198072	54893250	26301960	985	163115											
MPO	4353	broad.mit.edu	37	chr17	56355316	56355316	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacggccagcagccccagcTggttggacatgttgcgcagg	15	12	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56355316	A	A	56355316	3	1	207	1	0	0	0	0	1	0	0	0	9826	1580	55	5	1185	5	MPO	17	56355316	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	1462066	56355316	24839894	986	163116											
CLTC	1213	broad.mit.edu	37	chr17	57724917	57724917	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagtatggaaggagagtctCagccagtgaaaatgtttgat	14	4	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57724917	G	G	57724917	3	3	207	1	0	0	0	0	1	0	0	0	3598	827	29	4	419	4	CLTC	17	57724917	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1369601	57724917	23470293	987	163117											
TANC2	26115	broad.mit.edu	37	chr17	61391611	61391611	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatagaatcaacattcgcaGttgcattatttctgaataag	7	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61391611	T	T	61391611	1	4	207	0	1	0	0	0	0	0	0	0	15664	1044	36	3		3	TANC2	17	61391611	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	3666694	61391611	19803599	988	163118											
ACE	1636	broad.mit.edu	37	chr17	61562712	61562712	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactacaacaccaacatcacCacagagaccagcaagattct	4	14	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61562712	T	T	61562712	2	4	207	1	0	0	0	0	0	0	0	1	136	581	21	4		4	ACE	17	61562712	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	171101	61562712	19632498	989	163119											
NOL11	25926	broad.mit.edu	37	chr17	65732256	65732256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaattttgaaatttaccGctgtttattgaaacttgtga	6	5	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65732256	T	T	65732256	1	4	207	0	1	0	0	0	0	0	0	0	10616	1102	38	3		3	NOL11	17	65732256	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4169544	65732256	15462954	990	163120											
FAM20A	54757	broad.mit.edu	37	chr17	66550910	66550910	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgggggtggggctaggTcacttactctgggtgcagtc	19	7	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66550910	A	A	66550910	1	1	207	0	1	0	0	0	0	0	0	0	5584	1682	58	5		5	FAM20A	17	66550910	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	818654	66550910	14644300	991	163121											
ABCA9	10350	broad.mit.edu	37	chr17	67012550	67012550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaaatacaacaagtacCaattcgaagtcttcataaag	5	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67012550	A	A	67012550	1	1	207	0	1	0	0	0	0	0	0	0	39	609	21	2		2	ABCA9	17	67012550	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	461640	67012550	14182660	992	163122											
C17orf77	146723	broad.mit.edu	37	chr17	72588362	72588362	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtcctgtctcctctcctctCcttggtgatcacaggtgtct	9	14	5	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72588362	T	T	72588362	2	4	207	1	0	0	0	0	0	0	0	1	1899	842	30	4		4	C17orf77	17	72588362	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	5575812	72588362	8606848	993	163123											
EVPL	2125	broad.mit.edu	37	chr17	74023232	74023232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccttggcgggggagccCttgggggaccccttcccctg	15	16	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74023232	A	A	74023232	3	1	207	1	0	0	0	0	1	0	0	0	5334	680	24	2	6141	2	EVPL	17	74023232	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1434870	74023232	7171978	994	163124											
TNRC6C	57690	broad.mit.edu	37	chr17	76045134	76045134	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctccaactgtggctcagaGaacagtagcatggctacagg	12	11	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76045134	T	T	76045134	1	4	207	0	1	0	0	0	0	0	0	0	16465	957	33	3		3	TNRC6C	17	76045134	5'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	2021902	76045134	5150076	995	163125											
CARD14	79092	broad.mit.edu	37	chr17	78163574	78163574	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaggacattctggagcAgagcctggacgaggcgcggg	19	8	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78163574	G	G	78163574	3	3	207	1	0	0	0	0	1	0	0	0	2672	188	7	5	884	5	CARD14	17	78163574	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	2118440	78163574	3031636	996	163126											
RPTOR	57521	broad.mit.edu	37	chr17	78897445	78897445	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccagttcccccggacacGgaagatgttcgacaagggcc	11	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78897445	T	T	78897445	3	4	207	1	0	0	0	0	1	0	0	0	13776	1116	39	1	2870	1	RPTOR	17	78897445	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	733871	78897445	2297765	997	163127											
EPB41L3	23136	broad.mit.edu	37	chr18	5397212	5397212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagccccctccgtcaaggCagagccctctttccctttaa	6	16	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5397212	A	A	5397212	3	1	207	1	0	0	0	0	1	0	0	0	5196	710	25	3	597	3	EPB41L3	18	5397212	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08		5397212	72680036	998	163128											
KIAA0802	23255	broad.mit.edu	37	chr18	8825859	8825859	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagcctcttcaacatcattGaccacagccccgtggtgcag	8	16	3	1	rs146614505	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8825859	T	T	8825859	3	4	207	1	0	0	0	0	1	0	0	0	8264	1290	45	3	4401	3	KIAA0802	18	8825859	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3428647	8825859	69251389	999	163129											
CEP192	55125	broad.mit.edu	37	chr18	13073170	13073171	+	Missense_Mutation	DNP	GG	TT	TT													ttggaaatcgatcacaaccaGgcattaagttcacagtaaga							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	13073171	TT	TT	13073170	3	4	207	1	0	0	0	0	1	0	0	0	3281	1000	35	2	5716	2	CEP192	18	13073170	Missense_Mutation	DNP	GG	TCGA-73-4668-01A-01D-1265-08	4247311	13073170	65004078	1000	163130											
POTEC	388468	broad.mit.edu	37	chr18	14542915	14542915	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagaagtgcccacgttgctCgtgccgctccccctgcagca	10	18	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14542915	A	A	14542915	2	1	207	1	0	0	0	0	0	0	0	1	12358	871	31	3		3	POTEC	18	14542915	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	1469745	14542915	63534333	1001	163131											
ANKRD30B	374860	broad.mit.edu	37	chr18	14851733	14851733	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagggcatctcagtatAgagagcagcttaaagttctg	10	7	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14851733	T	T	14851733	4	4	207	1	0	0	0	0	0	1	0	0	659	412	15	5	3575	5	ANKRD30B	18	14851733	Nonsense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	308818	14851733	63225515	1002	163132											
MIB1	57534	broad.mit.edu	37	chr18	19424150	19424150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacactttgtctcagctacGtcagctccaagatatgcaag	7	12	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19424150	T	T	19424150	3	4	207	1	0	0	0	0	1	0	0	0	9659	1145	40	3	2205	3	MIB1	18	19424150	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	4572417	19424150	58653098	1003	163133											
C18orf45	85019	broad.mit.edu	37	chr18	20889479	20889480	+	Intron	INS	-	T	T													tatttacaggtcaatacaagINStttttttttttttaaagaaa							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20889480	T	T	20889479	6	5	207	0	1	1	1	0	0	0	0	0	1921	1044	36	0		0	C18orf45	18	20889479	Intron	INS	-	TCGA-73-4668-01A-01D-1265-08	1465329	20889479	57187769	1004	163134											
TTC39C	125488	broad.mit.edu	37	chr18	21663115	21663115	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgattctcacttgaggaCtggtattaaaacgagccaga	9	9	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21663115	T	T	21663115	1	4	207	0	1	0	0	0	0	0	0	0	16835	580	20	4		4	TTC39C	18	21663115	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	773636	21663115	56414133	1005	163135											
HRH4	59340	broad.mit.edu	37	chr18	22056939	22056939	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtcgcttatttcaacatgAatatttattggagcctgtgg	9	6	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22056939	T	T	22056939	3	4	207	1	0	0	0	0	1	0	0	0	7425	246	9	5	596	5	HRH4	18	22056939	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	393824	22056939	56020309	1006	163136											
CDH2	1000	broad.mit.edu	37	chr18	25532157	25532157	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgtcagcaagtttcttgAaccgtggcccccagtcgttc	9	13	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25532157	G	G	25532157	3	3	207	1	0	0	0	0	1	0	0	0	3135	246	9	5	43	5	CDH2	18	25532157	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	3475218	25532157	52545091	1007	163137											
DSC1	1823	broad.mit.edu	37	chr18	28713983	28713983	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgaacagtcacatactcTcactgttaacatatgtgttg	7	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28713983	A	A	28713983	4	1	207	1	0	0	0	0	0	1	0	0	4805	1559	54	5	753	5	DSC1	18	28713983	Nonsense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	3181826	28713983	49363265	1008	163138											
DSG1	1828	broad.mit.edu	37	chr18	28911745	28911745	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatagccttcaagattataaGacaagaaccttcagattcac	5	9	3	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28911745	T	T	28911745	3	4	207	1	0	0	0	0	1	0	0	0	4816	942	33	3	621	3	DSG1	18	28911745	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	197762	28911745	49165503	1009	163139											
C18orf34	374864	broad.mit.edu	37	chr18	30950216	30950216	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagtaaattttgatgttcaGaataagcaaaaaaattctgc	7	4	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30950216	T	T	30950216	1	4	207	0	1	0	0	0	0	0	0	0	1920	957	33	3		3	C18orf34	18	30950216	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2038471	30950216	47127032	1010	163140											
SYT4	6860	broad.mit.edu	37	chr18	40853678	40853678	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaactcaaaattgtgaagTgcaaggccaattcttggatt	8	7	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40853678	A	A	40853678	3	1	207	1	0	0	0	0	1	0	0	0	15595	1696	59	5	573	5	SYT4	18	40853678	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	9903462	40853678	37223570	1011	163141											
SYT4	6860	broad.mit.edu	37	chr18	40853766	40853766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaaggtttttctcagcaCtctagttttcactttatgct	5	10	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40853766	A	A	40853766	3	1	207	1	0	0	0	0	1	0	0	0	15595	565	20	3	661	3	SYT4	18	40853766	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	88	40853766	37223482	1012	163142											
SYT4	6860	broad.mit.edu	37	chr18	40854165	40854165	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attctttacttcatttttatCatctgctccaaacttctttt	1	10	5	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40854165	A	A	40854165	3	1	207	1	0	0	0	0	1	0	0	0	15595	826	29	3	1060	3	SYT4	18	40854165	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	399	40854165	37223083	1013	163143											
SLC14A2	8170	broad.mit.edu	37	chr18	43247686	43247686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgacagcaggtggctGgcttcctgcaaacccacttc	12	13	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43247686	A	A	43247686	1	1	207	0	1	0	0	0	0	0	0	0	14510	1363	47	4		4	SLC14A2	18	43247686	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	2393521	43247686	34829562	1014	163144											
DCC	1630	broad.mit.edu	37	chr18	50451550	50451550	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttaaagctctgagtatcTtgcttaatatatacatatgt	5	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50451550	A	A	50451550	1	1	207	0	1	0	0	0	0	0	0	0	4315	1624	56	5		5	DCC	18	50451550	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	7203864	50451550	27625698	1015	163145											
ATP8B1	5205	broad.mit.edu	37	chr18	55362865	55362865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatacctggacatgaagcCtaaataattagctgtttcta	7	9	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55362865	A	A	55362865	1	1	207	0	1	0	0	0	0	0	0	0	1198	696	24	2		2	ATP8B1	18	55362865	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4911315	55362865	22714383	1016	163146											
CCBE1	147372	broad.mit.edu	37	chr18	57107102	57107102	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgagaaggacaaagggcCctggctaacaagagtccagg	13	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57107102	A	A	57107102	1	1	207	0	1	0	0	0	0	0	0	0	2757	638	22	2		2	CCBE1	18	57107102	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1744237	57107102	20970146	1017	163147											
SERPINB13	5275	broad.mit.edu	37	chr18	61260283	61260283	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaacacttcttgacaacCtgctgtgaatgaagccctgg	8	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61260283	A	A	61260283	1	1	207	0	1	0	0	0	0	0	0	0	14213	696	24	2		2	SERPINB13	18	61260283	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4153181	61260283	16816965	1018	163148											
SERPINB13	5275	broad.mit.edu	37	chr18	61264493	61264493	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggctttactgtcacatccGccccaggtcatgaaaatgtt	8	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61264493	A	A	61264493	3	1	207	1	0	0	0	0	1	0	0	0	14213	1087	38	4	1098	4	SERPINB13	18	61264493	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	4210	61264493	16812755	1019	163149											
SERPINB13	5275	broad.mit.edu	37	chr18	61264781	61264781	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccatcctcgaaagtgaaaTgtccttttctttgtgccatg	7	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61264781	A	A	61264781	1	1	207	0	1	0	0	0	0	0	0	0	14213	1479	51	5		5	SERPINB13	18	61264781	3'UTR	SNP	T	TCGA-73-4668-01A-01D-1265-08	288	61264781	16812467	1020	163150											
SERPINB4	6318	broad.mit.edu	37	chr18	61305395	61305396	+	Intron	DNP	GT	AA	AA													agaaactgatatgactaactGtcgatctctaatacacctta							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	61305396	AA	AA	61305395	1	1	207	0	1	0	0	0	0	0	0	0	14216	1392	48	4		4	SERPINB4	18	61305395	Intron	DNP	GT	TCGA-73-4668-01A-01D-1265-08	40614	61305395	16771853	1021	163151											
SERPINB4	6318	broad.mit.edu	37	chr18	61328038	61328038	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctctgtgactcacatgaTatgttgcagcttttcctgtg	10	9	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61328038	C	C	61328038	3	2	207	1	0	0	0	0	1	0	0	0	14216	1406	49	5		5	SERPINB4	18	61328038	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	22643	61328038	16749210	1022	163152											
SERPINB8	5271	broad.mit.edu	37	chr18	61652456	61652456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatggtcattctgcttcccGatgacaacacggacctcgcc	9	15	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61652456	T	T	61652456	3	4	207	1	0	0	0	0	1	0	0	0	14220	1058	37	3	715	3	SERPINB8	18	61652456	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	324418	61652456	16424792	1023	163153											
DSEL	92126	broad.mit.edu	37	chr18	65179982	65179982	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacacatccatcatggcacCattatacctattcataaact	2	14	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65179982	G	G	65179982	3	3	207	1	0	0	0	0	1	0	0	0	4815	594	21	4	1778	4	DSEL	18	65179982	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3527526	65179982	12897266	1024	163154											
ATP9B	374868	broad.mit.edu	37	chr18	77137082	77137082	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggtcaaacaattctgcAgtcaagaaaacctgagattt	8	8	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77137082	C	C	77137082	1	2	207	0	1	0	0	0	0	0	0	0	1203	203	7	5		5	ATP9B	18	77137082	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	11957100	77137082	940166	1025	163155											
NFATC1	4772	broad.mit.edu	37	chr18	77171101	77171101	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctcaacggccggcagccgCcctactcaccccaccactcg	8	22	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77171101	G	G	77171101	3	3	207	1	0	0	0	0	1	0	0	0	10456	739	26	4	924	4	NFATC1	18	77171101	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	34019	77171101	906147	1026	163156											
ADNP2	22850	broad.mit.edu	37	chr18	77894491	77894491	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taaatcagactgttcgccctGgggttttacccctcacccag	8	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77894491	C	C	77894491	3	2	207	1	0	0	0	0	1	0	0	0	324	1348	47	4	1205	4	ADNP2	18	77894491	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	723390	77894491	182757	1027	163157											
C19orf6	91304	broad.mit.edu	37	chr19	1011723	1011723	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgcccgccccgccctgcGccggcgggacactcaccgat	13	20	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1011723	A	A	1011723	1	1	207	0	1	0	0	0	0	0	0	0	1960	1102	38	4		4	C19orf6	19	1011723	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08		1011723	58117260	1028	163158											
TIMM13	26517	broad.mit.edu	37	chr19	2426159	2426159	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccacccaacaccccaccCcaccgtaccctacccaagga	5	22	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2426159	A	A	2426159	1	1	207	0	1	0	0	0	0	0	0	0	16029	638	22	2		2	TIMM13	19	2426159	3'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	1414436	2426159	56702824	1029	163159											
ZNF77	58492	broad.mit.edu	37	chr19	2936786	2936786	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacggatttcttttcatataGtaatccaaaaatgtaccgtt	5	7	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2936786	C	C	2936786	1	2	207	0	1	0	0	0	0	0	0	0	18271	1044	36	4		4	ZNF77	19	2936786	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	510627	2936786	56192197	1030	163160											
C19orf45	374877	broad.mit.edu	37	chr19	7566259	7566259	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accccacgacgcgcgcccgcAgcctcgcgcgcccagttgcc	11	22	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7566259	T	T	7566259	3	4	207	1	0	0	0	0	1	0	0	0	1947	188	7	5	553	5	C19orf45	19	7566259	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	4629473	7566259	51562724	1031	163161											
CD209	30835	broad.mit.edu	37	chr19	7805704	7805704	+	3'UTR	DEL	G	-	-													agaggaggaggaacagaaacGacagaagaaacaaaaaccgg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7805704	-	-	7805704	6	5	207	0	1	1	0	1	0	0	0	0	3014	1073	37	0		0	CD209	19	7805704	3'UTR	DEL	G	TCGA-73-4668-01A-01D-1265-08	239445	7805704	51323279	1032	163162											
FBN3	84467	broad.mit.edu	37	chr19	8174681	8174681	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagggagccccttcctcGgcccccctccctcctagctt	8	21	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8174681	T	T	8174681	1	4	207	0	1	0	0	0	0	0	0	0	5761	1131	39	1		1	FBN3	19	8174681	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	368977	8174681	50954302	1033	163163											
LASS4	79603	broad.mit.edu	37	chr19	8320582	8320582	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggaaccaggatcgaccccAgctgaccaagaagttctgtg	11	13	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8320582	T	T	8320582	3	4	207	1	0	0	0	0	1	0	0	0	8713	188	7	5	393	5	LASS4	19	8320582	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	145901	8320582	50808401	1034	163164											
LASS4	79603	broad.mit.edu	37	chr19	8321964	8321964	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgactacctgctggaggtGggcccgacccctgcctgacc	12	16	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8321964	T	T	8321964	1	4	207	0	1	0	0	0	0	0	0	0	8713	1363	47	2		2	LASS4	19	8321964	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1382	8321964	50807019	1035	163165											
MUC16	94025	broad.mit.edu	37	chr19	9012905	9012906	+	Intron	INS	-	G	G													agagggccagcagctgtagtINSggaggtgggaaacaaacact							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9012906	G	G	9012905	6	5	207	0	1	1	1	0	0	0	0	0	10067	1711	59	0		0	MUC16	19	9012905	Intron	INS	-	TCGA-73-4668-01A-01D-1265-08	690941	9012905	50116078	1036	163166											
MUC16	94025	broad.mit.edu	37	chr19	9086026	9086026	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaatgttaagcttatggccCtgtttccaggagtggaagtc	12	8	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9086026	G	G	9086026	3	3	207	1	0	0	0	0	1	0	0	0	10067	681	24	4	38070	4	MUC16	19	9086026	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	73121	9086026	50042957	1037	163167											
ZNF426	79088	broad.mit.edu	37	chr19	9643421	9643421	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctctaaaccttggggttTagagtgcagggagaaagtac	12	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9643421	C	C	9643421	1	2	207	0	1	0	0	0	0	0	0	0	18027	1769	61	5		5	ZNF426	19	9643421	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	557395	9643421	49485562	1038	163168											
ILF3	3609	broad.mit.edu	37	chr19	10790525	10790525	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgagaaatccattggcAcggccaacagaccgatgggt	13	9	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10790525	G	G	10790525	3	3	207	1	0	0	0	0	1	0	0	0	7782	159	6	5	807	5	ILF3	19	10790525	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	1147104	10790525	48338458	1039	163169											
ELAVL3	1995	broad.mit.edu	37	chr19	11568842	11568843	+	Intron	DNP	CG	AT	AT													gttgcaagcttgggggcaccCggcctggggccatctggctg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	11568843	AT	AT	11568842	1	1	207	0	1	0	0	0	0	0	0	0	5093	667	23	1		1	ELAVL3	19	11568842	Intron	DNP	CG	TCGA-73-4668-01A-01D-1265-08	778317	11568842	47560141	1040	163170											
LYL1	4066	broad.mit.edu	37	chr19	13211933	13211933	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggcacacaccatctctGccttctcagtcatggtgggg	13	12	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13211933	T	T	13211933	3	4	207	1	0	0	0	0	1	0	0	0	9194	1319	46	3	801	3	LYL1	19	13211933	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1643091	13211933	45917050	1041	163171											
EMR2	30817	broad.mit.edu	37	chr19	14857695	14857695	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcagcgaggatgctcagaTgatgtcactcacagagaaga	14	8	3	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14857695	A	A	14857695	1	1	207	0	1	0	0	0	0	0	0	0	5147	1479	51	5		5	EMR2	19	14857695	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1645762	14857695	44271288	1042	163172											
ILVBL	10994	broad.mit.edu	37	chr19	15229989	15229989	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcccacctgctaggacaaTgacatccgccttcttcaggg	10	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15229989	C	C	15229989	3	2	207	1	0	0	0	0	1	0	0	0	7785	1464	51	5	891	5	ILVBL	19	15229989	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	372294	15229989	43898994	1043	163173											
CIB3	117286	broad.mit.edu	37	chr19	16280593	16280593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaaagactgggagcagGgagcaggcaagacgcttgtc	17	8	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16280593	T	T	16280593	1	4	207	0	1	0	0	0	0	0	0	0	3453	1247	43	2		2	CIB3	19	16280593	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1050604	16280593	42848390	1044	163174											
ZNF253	56242	broad.mit.edu	37	chr19	20002661	20002661	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaaaccttacagatGtgaagaatgtggcaaagctt	12	5	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20002661	T	T	20002661	3	4	207	1	0	0	0	0	1	0	0	0	17923	1377	48	3	619	3	ZNF253	19	20002661	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3722068	20002661	39126322	1045	163175											
ZNF90	7643	broad.mit.edu	37	chr19	20235932	20235932	+	RNA	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgtggcgcactgcagacGcggcaatggtctcatcaagg	14	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20235932	C	C	20235932	1	2	207	0	1	0	0	0	0	0	0	0	18328	1102	38	4		4	ZNF90	19	20235932	RNA	SNP	G	TCGA-73-4668-01A-01D-1265-08	233271	20235932	38893051	1046	163176											
ZNF257	113835	broad.mit.edu	37	chr19	22270984	22270984	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataactacccagagcaaaatGtatcaatgtgataaatatgt	6	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22270984	T	T	22270984	3	4	207	1	0	0	0	0	1	0	0	0	17926	1377	48	3	446	3	ZNF257	19	22270984	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2035052	22270984	36857999	1047	163177											
ZNF676	163223	broad.mit.edu	37	chr19	22363524	22363524	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgtagggtttctctccaGcatgaattctcttgtgttca	8	8	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22363524	A	A	22363524	3	1	207	1	0	0	0	0	1	0	0	0	18210	971	34	4	775	4	ZNF676	19	22363524	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	92540	22363524	36765459	1048	163178											
ZNF98	148198	broad.mit.edu	37	chr19	22574549	22574549	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggactggttaaaagctttGccacattcttcacatttgta	8	8	2	0	rs74169609		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22574549	C	C	22574549	2	2	207	1	0	0	0	0	0	0	0	1	18332	1306	46	4		4	ZNF98	19	22574549	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	211025	22574549	36554434	1049	163179											
ZNF99	7652	broad.mit.edu	37	chr19	22952648	22952648	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagaatggcagaagatcCacaacaccagcacagacaag	8	10	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22952648	T	T	22952648	1	4	207	0	1	0	0	0	0	0	0	0	18333	609	21	4		4	ZNF99	19	22952648	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	378099	22952648	36176335	1050	163180											
DPY19L3	147991	broad.mit.edu	37	chr19	32945754	32945754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttatgttatatgagccaGtgtttttaaatccttaagta	6	6	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32945754	T	T	32945754	1	4	207	0	1	0	0	0	0	0	0	0	4782	1044	36	3		3	DPY19L3	19	32945754	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	9993106	32945754	26183229	1051	163181											
ANKRD27	84079	broad.mit.edu	37	chr19	33122400	33122400	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtctccaaatccctcagactCctgcagggaaaaaaccaaac	6	14	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33122400	A	A	33122400	4	1	207	1	0	0	0	0	0	1	0	0	655	869	30	3	2103	3	ANKRD27	19	33122400	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	176646	33122400	26006583	1052	163182											
UBA2	10054	broad.mit.edu	37	chr19	34934961	34934961	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttgtttttttttttTttttttttttttgtctcaga	3	2	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34934961	G	G	34934961	1	3	207	0	1	0	0	0	0	0	0	0	16954	1856	64	5		5	UBA2	19	34934961	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1812561	34934961	24194022	1053	163183											
LGI4	163175	broad.mit.edu	37	chr19	35617992	35617993	+	Intron	DNP	CT	TA	TA													attgctgagcctcagtttgcCtacatctctgaaatggaggc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	35617993	TA	TA	35617992	1	4	207	0	1	0	0	0	0	0	0	0	8826	696	24	4		4	LGI4	19	35617992	Intron	DNP	CT	TCGA-73-4668-01A-01D-1265-08	683031	35617992	23510991	1054	163184											
MAG	4099	broad.mit.edu	37	chr19	35786962	35786962	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggccggaaggcctccccGcaccttccccagcaggcctg	12	18	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35786962	T	T	35786962	1	4	207	0	1	0	0	0	0	0	0	0	9250	1102	38	3		3	MAG	19	35786962	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	168970	35786962	23342021	1055	163185											
MAG	4099	broad.mit.edu	37	chr19	35790520	35790520	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtggaggtcagctgcaTggtgccggacaactgcccag	17	10	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35790520	G	G	35790520	3	3	207	1	0	0	0	0	1	0	0	0	9250	1464	51	5	489	5	MAG	19	35790520	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	3558	35790520	23338463	1056	163186											
DMKN	93099	broad.mit.edu	37	chr19	36003433	36003433	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggaccagggaggcacgcGgagcatgtgggcttggaggg	22	7	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36003433	C	C	36003433	1	2	207	0	1	0	0	0	0	0	0	0	4622	1131	39	4		4	DMKN	19	36003433	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	212913	36003433	23125550	1057	163187											
ZNF793	390927	broad.mit.edu	37	chr19	38028480	38028480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acatcagagaacacacacagGagagagaccctttgtctgca	9	11	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38028480	T	T	38028480	3	4	207	1	0	0	0	0	1	0	0	0	18294	1174	41	3	934	3	ZNF793	19	38028480	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2025047	38028480	21100503	1058	163188											
ZNF573	126231	broad.mit.edu	37	chr19	38287053	38287053	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtccgggcaggcctgaggCtgggatgccacgctgctcct	15	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38287053	T	T	38287053	1	4	207	0	1	0	0	0	0	0	0	0	18132	812	28	4		4	ZNF573	19	38287053	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	258573	38287053	20841930	1059	163189											
SIPA1L3	23094	broad.mit.edu	37	chr19	38621511	38621511	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgaggtcccaatagagggGggataggcaggcccttctag	15	9	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38621511	T	T	38621511	1	4	207	0	1	0	0	0	0	0	0	0	14444	1247	43	2		2	SIPA1L3	19	38621511	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	334458	38621511	20507472	1060	163190											
RYR1	6261	broad.mit.edu	37	chr19	38939008	38939008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacagctggagtgggagcCacctgcgctggggccagcca	15	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38939008	A	A	38939008	3	1	207	1	0	0	0	0	1	0	0	0	13879	594	21	2	852	2	RYR1	19	38939008	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	317497	38939008	20189975	1061	163191											
RYR1	6261	broad.mit.edu	37	chr19	39068645	39068646	+	Frame_Shift_Ins	INS	-	T	T													cacactagagatcacagcccINSacaatgagcgcaagcccaac							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39068646	T	T	39068645	7	5	207	1	0	1	1	0	0	0	0	0	13879	594	21	0	14650	0	RYR1	19	39068645	Frame_Shift_Ins	INS	-	TCGA-73-4668-01A-01D-1265-08	129637	39068645	20060338	1062	163192											
MAP4K1	11184	broad.mit.edu	37	chr19	39098508	39098508	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagggcctcacttacatgtCcacgtcgtcatagtcatcgt	9	13	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39098508	A	A	39098508	3	1	207	1	0	0	0	0	1	0	0	0	9351	855	30	3	1478	3	MAP4K1	19	39098508	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	29863	39098508	20030475	1063	163193											
PAPL	390928	broad.mit.edu	37	chr19	39591523	39591523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggcccctatagtcccCtggccagccccacctccccc	9	21	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39591523	A	A	39591523	1	1	207	0	1	0	0	0	0	0	0	0	11521	696	24	2		2	PAPL	19	39591523	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	493015	39591523	19537460	1064	163194											
LGALS14	56891	broad.mit.edu	37	chr19	40195140	40195140	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagaagactggacacaatTccgaagagctgcccagaagg	11	11	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40195140	C	C	40195140	1	2	207	0	1	0	0	0	0	0	0	0	8813	1798	62	5		5	LGALS14	19	40195140	5'UTR	SNP	T	TCGA-73-4668-01A-01D-1265-08	603617	40195140	18933843	1065	163195											
C19orf47	126526	broad.mit.edu	37	chr19	40842091	40842091	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtcacgcccagctcattcaTtatctccttattgagatcca	6	13	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40842091	A	A	40842091	3	1	207	1	0	0	0	0	1	0	0	0	1949	1493	52	5	1033	5	C19orf47	19	40842091	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	646951	40842091	18286892	1066	163196											
SHKBP1	92799	broad.mit.edu	37	chr19	41086466	41086466	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgatccctactcttcccCtcaaggacaacctgaggagc	7	15	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41086466	T	T	41086466	1	4	207	0	1	0	0	0	0	0	0	0	14397	696	24	4		4	SHKBP1	19	41086466	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	244375	41086466	18042517	1067	163197											
SHKBP1	92799	broad.mit.edu	37	chr19	41096802	41096802	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtgcaatgaggggagaGgggacagcatggtgttcccg	17	7	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41096802	T	T	41096802	1	4	207	0	1	0	0	0	0	0	0	0	14397	1015	35	2		2	SHKBP1	19	41096802	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	10336	41096802	18032181	1068	163198											
ADCK4	79934	broad.mit.edu	37	chr19	41198798	41198798	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagtggagataagcagCcccccactgcaccccaccaa	7	18	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41198798	A	A	41198798	1	1	207	0	1	0	0	0	0	0	0	0	290	754	26	3		3	ADCK4	19	41198798	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	101996	41198798	17930185	1069	163199											
PSG1	5669	broad.mit.edu	37	chr19	43383729	43383729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggaggggctgagagggttCccatggtctctgctgcttgt	17	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43383729	A	A	43383729	3	1	207	1	0	0	0	0	1	0	0	0	12759	855	30	3	1331	3	PSG1	19	43383729	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2184931	43383729	15745254	1070	163200											
PSG6	5675	broad.mit.edu	37	chr19	43514022	43514022	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaggaggagatccaggCccagatacaggcaaataagt	13	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43514022	G	G	43514022	1	3	207	0	1	0	0	0	0	0	0	0	12765	754	26	4		4	PSG6	19	43514022	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	130293	43514022	15614961	1071	163201											
PSG6	5675	broad.mit.edu	37	chr19	43514659	43514659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttctttcctacaggctcCcaggaagggtgtgaaagcaa	11	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43514659	A	A	43514659	1	1	207	0	1	0	0	0	0	0	0	0	12765	638	22	2		2	PSG6	19	43514659	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	637	43514659	15614324	1072	163202											
PSG6	5675	broad.mit.edu	37	chr19	43593538	43593538	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggtcttgctctttgtgattCcatgggagaaagtggaattg	14	5	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43593538	A	A	43593538	1	1	207	0	1	0	0	0	0	0	0	0	12765	870	30	3		3	PSG6	19	43593538	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	78879	43593538	15535445	1073	163203											
PSG9	5678	broad.mit.edu	37	chr19	43762926	43762926	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtgtctatacttggacCggagagagactgagaggcct	14	7	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43762926	A	A	43762926	1	1	207	0	1	0	0	0	0	0	0	0	12768	667	23	1		1	PSG9	19	43762926	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	169388	43762926	15366057	1074	163204											
XRCC1	7515	broad.mit.edu	37	chr19	44047554	44047554	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacatacttcaggcttgcGgcaccaccccatagagctgg	10	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44047554	A	A	44047554	3	1	207	1	0	0	0	0	1	0	0	0	17579	1116	39	4	13	4	XRCC1	19	44047554	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	284628	44047554	15081429	1075	163205											
BCAM	4059	broad.mit.edu	37	chr19	45315594	45315594	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgagactacgtgtgcgtgGtgagggcaggggcggcaggc	21	8	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45315594	T	T	45315594	3	4	207	1	0	0	0	0	1	0	0	0	1349	1261	44	3	389	3	BCAM	19	45315594	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1268040	45315594	13813389	1076	163206											
PPP1R13L	10848	broad.mit.edu	37	chr19	45895654	45895654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagacacccaacactcCctctccacaacttccagggc	6	19	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45895654	A	A	45895654	1	1	207	0	1	0	0	0	0	0	0	0	12459	638	22	2		2	PPP1R13L	19	45895654	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	580060	45895654	13233329	1077	163207											
GIPR	2696	broad.mit.edu	37	chr19	46174714	46174714	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actgctaacctttgcccccaGacacctacatccgagtccca	5	18	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46174714	T	T	46174714	1	4	207	0	1	0	0	0	0	0	0	0	6459	957	33	3		3	GIPR	19	46174714	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	279060	46174714	12954269	1078	163208											
TRPM4	54795	broad.mit.edu	37	chr19	49685943	49685943	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggccacttcctgaccccgAtgcgcctggcccaactctac	9	18	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49685943	T	T	49685943	3	4	207	1	0	0	0	0	1	0	0	0	16713	333	12	5	1414	5	TRPM4	19	49685943	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	3511229	49685943	9443040	1079	163209											
PRRG2	5639	broad.mit.edu	37	chr19	50087278	50087278	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcccagcgaggccaaaccAacgtcctccaccccaaatta	5	18	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50087278	T	T	50087278	1	4	207	0	1	0	0	0	0	0	0	0	12712	145	5	5		5	PRRG2	19	50087278	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	401335	50087278	9041705	1080	163210											
TSKS	60385	broad.mit.edu	37	chr19	50249627	50249627	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctcagctacttgagaaCccccgtcccttgggtcccgc	8	19	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50249627	T	T	50249627	1	4	207	0	1	0	0	0	0	0	0	0	16751	522	18	4		4	TSKS	19	50249627	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	162349	50249627	8879356	1081	163211											
POLD1	5424	broad.mit.edu	37	chr19	50905995	50905995	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatcgagtgcgccggccgcAaaggtctgtccccgggcccg	14	15	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50905995	T	T	50905995	4	4	207	1	0	0	0	0	0	1	0	0	12285	131	5	5	993	5	POLD1	19	50905995	Nonsense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	656368	50905995	8222988	1082	163212											
SHANK1	50944	broad.mit.edu	37	chr19	51219505	51219505	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagggcatgccttctcttaTcagtgaaggagttggggaag	14	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51219505	A	A	51219505	1	1	207	0	1	0	0	0	0	0	0	0	14377	1450	50	5		5	SHANK1	19	51219505	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	313510	51219505	7909478	1083	163213											
ZNF841	284371	broad.mit.edu	37	chr19	52568499	52568499	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatttgccacactcattaCatttataaggtttttcacta	4	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52568499	A	A	52568499	3	1	207	1	0	0	0	0	1	0	0	0	18318	478	17	3	142	3	ZNF841	19	52568499	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1348994	52568499	6560484	1084	163214											
ZNF480	147657	broad.mit.edu	37	chr19	52825656	52825656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtctttattcaaaattcgCacctagcacaacattggaga	7	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52825656	A	A	52825656	3	1	207	1	0	0	0	0	1	0	0	0	18062	710	25	3	1167	3	ZNF480	19	52825656	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	257157	52825656	6303327	1085	163215											
ZNF534	147658	broad.mit.edu	37	chr19	52941638	52941638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtggcaaagcatttagtGtgtgttccagtcttactgct	10	7	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52941638	T	T	52941638	3	4	207	1	0	0	0	0	1	0	0	0	18100	1377	48	3	978	3	ZNF534	19	52941638	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	115982	52941638	6187345	1086	163216											
ZNF28	7576	broad.mit.edu	37	chr19	53321172	53321172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaaggaaggagacagagCaatccaccgagaataccatc	10	10	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53321172	A	A	53321172	1	1	207	0	1	0	0	0	0	0	0	0	17939	725	25	3		3	ZNF28	19	53321172	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	379534	53321172	5807811	1087	163217											
ZNF415	55786	broad.mit.edu	37	chr19	53612523	53612523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactctccaatgacgcgcaaGgtttgatttttgactaaaga	8	8	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53612523	T	T	53612523	3	4	207	1	0	0	0	0	1	0	0	0	18019	1000	35	2	896	2	ZNF415	19	53612523	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	291351	53612523	5516460	1088	163218											
BIRC8	112401	broad.mit.edu	37	chr19	53793083	53793083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcttctcctcttgcagaCgccttagcggctcttcaggg	10	13	4	1	rs138004934	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53793083	A	A	53793083	3	1	207	1	0	0	0	0	1	0	0	0	1446	536	19	3	169	3	BIRC8	19	53793083	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	180560	53793083	5335900	1089	163219											
ZNF761	388561	broad.mit.edu	37	chr19	53958199	53958199	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggatcaagctttcattcGcatctgcctgaaatgcacat	7	11	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53958199	A	A	53958199	2	1	207	1	0	0	0	0	0	0	0	1	18265	1074	38	4		4	ZNF761	19	53958199	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	165116	53958199	5170784	1090	163220											
NLRP12	91662	broad.mit.edu	37	chr19	54304614	54304614	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgagagttgaggccagctCgtcacaggcagcagcagtga	14	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54304614	A	A	54304614	4	1	207	1	0	0	0	0	0	1	0	0	10569	893	31	3	578	3	NLRP12	19	54304614	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	346415	54304614	4824369	1091	163221											
PRPF31	26121	broad.mit.edu	37	chr19	54629929	54629929	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcggaaagcggcccggctGgtggccgccaagtgcacact	16	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54629929	T	T	54629929	2	4	207	1	0	0	0	0	0	0	0	1	12672	1335	47	2		2	PRPF31	19	54629929	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	325315	54629929	4499054	1092	163222											
LILRA1	11024	broad.mit.edu	37	chr19	55107517	55107517	+	Intron	SNP	C	G	G													ccaagggagggagagacagaCagagacaggggatgggcggg							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55107517	G	G	55107517	1	3	207	0	1	0	0	0	0	0	0	0	8856	493	17	4		4	LILRA1	19	55107517	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	477588	55107517	4021466	1093	163223	689	2									
LILRA1	11024	broad.mit.edu	37	chr19	55107527	55107527	+	Intron	SNP	G	T	T													gagagacagacagagacaggGgatgggcggggcggggaaga							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55107527	T	T	55107527	1	4	207	0	1	0	0	0	0	0	0	0	8856	1247	43	2		2	LILRA1	19	55107527	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	10	55107527	4021456	1094	163224	689	2									
LILRB1	10859	broad.mit.edu	37	chr19	55143453	55143453	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aactcaggagggaatgtaatCctccagtgtgactcacaggt	11	9	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55143453	A	A	55143453	2	1	207	1	0	0	0	0	0	0	0	1	8862	845	30	3		3	LILRB1	19	55143453	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	35926	55143453	3985530	1095	163225											
LILRB1	10859	broad.mit.edu	37	chr19	55143930	55143930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtgtttctaagaagcCatcactctcagtgcagccag	9	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55143930	A	A	55143930	3	1	207	1	0	0	0	0	1	0	0	0	8862	594	21	2	695	2	LILRB1	19	55143930	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	477	55143930	3985053	1096	163226											
LILRB4	11006	broad.mit.edu	37	chr19	55175787	55175787	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccctactgcatctgagatCagagcacggagctcagcagc	10	14	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55175787	A	A	55175787	4	1	207	1	0	0	0	0	0	1	0	0	8865	838	29	3	520	3	LILRB4	19	55175787	Nonsense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	31857	55175787	3953196	1097	163227											
KIR3DL3	115653	broad.mit.edu	37	chr19	55247646	55247646	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggccttgatgggatcttcTagggagacaatagccctgtc	12	10	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55247646	C	C	55247646	1	2	207	0	1	0	0	0	0	0	0	0	8393	1537	53	5		5	KIR3DL3	19	55247646	3'UTR	SNP	T	TCGA-73-4668-01A-01D-1265-08	71859	55247646	3881337	1098	163228											
KIR3DP1	768329	broad.mit.edu	37	chr19	55297704	55297704	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgtacgtcaccctcccaTgatgtagtcaacatgtaagc	8	13	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55297704	A	A	55297704	1	1	207	0	1	0	0	0	0	0	0	0	8394	1479	51	5		5	KIR3DP1	19	55297704	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	50058	55297704	3831279	1099	163229											
SYT5	6861	broad.mit.edu	37	chr19	55686464	55686464	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgagggtctggaaagcctatGatctgattggctcaggatgt	14	6	3	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55686464	C	C	55686464	1	2	207	0	1	0	0	0	0	0	0	0	15596	1305	45	4		4	SYT5	19	55686464	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	388760	55686464	3442519	1100	163230											
BRSK1	84446	broad.mit.edu	37	chr19	55813338	55813338	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccgcgcgtgcgcgggGcgatgcactcagtcgccact	16	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55813338	C	C	55813338	1	2	207	0	1	0	0	0	0	0	0	0	1532	1218	42	4		4	BRSK1	19	55813338	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	126874	55813338	3315645	1101	163231											
NLRP13	126204	broad.mit.edu	37	chr19	56419433	56419433	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgccaaggttatacaCggtacacaaggaattaaaaa	7	9	1	0	rs146826430	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56419433	A	A	56419433	1	1	207	0	1	0	0	0	0	0	0	0	10570	551	19	3		3	NLRP13	19	56419433	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	606095	56419433	2709550	1102	163232											
NLRP8	126205	broad.mit.edu	37	chr19	56467428	56467428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaccctgaacttcatgaaCgtgtggaagctcagctccag	10	12	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56467428	A	A	56467428	3	1	207	1	0	0	0	0	1	0	0	0	10578	535	19	3	2014	3	NLRP8	19	56467428	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	47995	56467428	2661555	1103	163233											
ZNF667	63934	broad.mit.edu	37	chr19	56973748	56973748	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcagaaggcatcctttcctCcccctttagggtccacactg	8	15	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56973748	A	A	56973748	1	1	207	0	1	0	0	0	0	0	0	0	18201	870	30	3		3	ZNF667	19	56973748	5'UTR	SNP	C	TCGA-73-4668-01A-01D-1265-08	506320	56973748	2155235	1104	163234											
ZIM2	23619	broad.mit.edu	37	chr19	57293202	57293202	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatattaaaatattgcctctGacctgggttgagactcactg	8	8	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57293202	T	T	57293202	1	4	207	0	1	0	0	0	0	0	0	0	17810	1305	45	3		3	ZIM2	19	57293202	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	319454	57293202	1835781	1105	163235											
PEG3	5178	broad.mit.edu	37	chr19	57326484	57326484	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaggccacagtcctcaCattcatagattttgtcatca	6	13	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57326484	A	A	57326484	3	1	207	1	0	0	0	0	1	0	0	0	11814	478	17	3	1444	3	PEG3	19	57326484	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	33282	57326484	1802499	1106	163236											
ZIM3	114026	broad.mit.edu	37	chr19	57654227	57654227	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttttttttttgttttgGtttttttgtgtttgtttatt	6	1	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57654227	T	T	57654227	1	4	207	0	1	0	0	0	0	0	0	0	17811	1276	44	3		3	ZIM3	19	57654227	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	327743	57654227	1474756	1107	163237											
TGM6	343641	broad.mit.edu	37	chr20	2381107	2381107	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtgggtcctgcccccaGcctaggcccgagggctctgg	16	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2381107	C	C	2381107	1	2	207	0	1	0	0	0	0	0	0	0	15957	986	34	4		4	TGM6	20	2381107	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08		2381107	60644413	1108	163238											
CPXM1	56265	broad.mit.edu	37	chr20	2775946	2775946	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggtaggtgaggagggCgtctttgttgttctcccact	13	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2775946	G	G	2775946	3	3	207	1	0	0	0	0	1	0	0	0	3869	768	27	4	379	4	CPXM1	20	2775946	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	394839	2775946	60249574	1109	163239											
VPS16	64601	broad.mit.edu	37	chr20	2844140	2844140	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactgcgctgggcacggtGgctcatgcctgtaatcccaa	12	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2844140	T	T	2844140	1	4	207	0	1	0	0	0	0	0	0	0	17320	1363	47	2		2	VPS16	20	2844140	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	68194	2844140	60181380	1110	163240											
PTPRA	5786	broad.mit.edu	37	chr20	3003389	3003389	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attgatgccatgctggacatGatgcatacagaacggaaggt	12	7	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3003389	T	T	3003389	3	4	207	1	0	0	0	0	1	0	0	0	12903	1290	45	3	1433	3	PTPRA	20	3003389	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	159249	3003389	60022131	1111	163241											
ADRA1D	146	broad.mit.edu	37	chr20	4228885	4228885	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagaagcgctcgtcaggGggcacgggctccttccagcc	14	16	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4228885	T	T	4228885	2	4	207	1	0	0	0	0	0	0	0	1	336	1219	43	2		2	ADRA1D	20	4228885	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1225496	4228885	58796635	1112	163242											
PROKR2	128674	broad.mit.edu	37	chr20	5283203	5283203	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagagctgctgatccacaGgccagatctggccacagaag	12	11	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5283203	T	T	5283203	3	4	207	1	0	0	0	0	1	0	0	0	12659	1000	35	2	519	2	PROKR2	20	5283203	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1054318	5283203	57742317	1113	163243											
TRMT6	51605	broad.mit.edu	37	chr20	5930877	5930877	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacctggagggagggggtatCtacaaggtgggggcgggaga	21	5	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5930877	T	T	5930877	1	4	207	0	1	0	0	0	0	0	0	0	16693	928	32	4		4	TRMT6	20	5930877	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	647674	5930877	57094643	1114	163244											
C20orf103	24141	broad.mit.edu	37	chr20	9498797	9498797	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactggcctctagtgatccgCagaagacggtcaccatgatc	10	13	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9498797	G	G	9498797	3	3	207	1	0	0	0	0	1	0	0	0	2097	711	25	4	604	4	C20orf103	20	9498797	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3567920	9498797	53526723	1115	163245											
SNAP25	6616	broad.mit.edu	37	chr20	10280118	10280118	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacttctgaaatgaccaacaGgaagtgtgaagggcataaca	10	8	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10280118	C	C	10280118	1	2	207	0	1	0	0	0	0	0	0	0	14944	1015	35	4		4	SNAP25	20	10280118	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	781321	10280118	52745402	1116	163246											
RALGAPA2	57186	broad.mit.edu	37	chr20	20484116	20484116	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgccattgcgctgaaggCcacccatgaacccacagtgg	11	14	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20484116	T	T	20484116	3	4	207	1	0	0	0	0	1	0	0	0	13122	739	26	4	554	4	RALGAPA2	20	20484116	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	10203998	20484116	42541404	1117	163247											
NKX2-2	4821	broad.mit.edu	37	chr20	21494266	21494266	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccggcaggtctaagatGtccttgaccgaaaaccccgt	11	12	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21494266	A	A	21494266	2	1	207	1	0	0	0	0	0	0	0	1	10545	1368	48	4		4	NKX2-2	20	21494266	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1010150	21494266	41531254	1118	163248											
C20orf3	57136	broad.mit.edu	37	chr20	24950143	24950143	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggccagtaactgatggctCagctaatcccacacacacct	7	15	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24950143	G	G	24950143	1	3	207	0	1	0	0	0	0	0	0	0	2131	841	29	4		4	C20orf3	20	24950143	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3455877	24950143	38075377	1119	163249											
GINS1	9837	broad.mit.edu	37	chr20	25405910	25405910	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggtcactgggaggagatGaaggtttggacattacacag	15	5	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25405910	T	T	25405910	4	4	207	1	0	0	0	0	0	1	0	0	6451	1291	45	3	412	3	GINS1	20	25405910	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	455767	25405910	37619610	1120	163250											
HM13	81502	broad.mit.edu	37	chr20	30147248	30147248	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctctcattgttctaggtAgagaaatgggactttctgct	9	10	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30147248	G	G	30147248	1	3	207	0	1	0	0	0	0	0	0	0	7284	435	15	5		5	HM13	20	30147248	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	4741338	30147248	32878272	1121	163251											
COX4I2	84701	broad.mit.edu	37	chr20	30231194	30231194	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggccccttccccacaccCaactgcctccagtgtaccgg	8	19	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30231194	T	T	30231194	1	4	207	0	1	0	0	0	0	0	0	0	3802	609	21	4		4	COX4I2	20	30231194	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	83946	30231194	32794326	1122	163252											
MYLK2	85366	broad.mit.edu	37	chr20	30411461	30411461	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcttcacatttcccctgTgcaaggcccagacacacacc	8	16	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30411461	C	C	30411461	1	2	207	0	1	0	0	0	0	0	0	0	10151	1711	59	5		5	MYLK2	20	30411461	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	180267	30411461	32614059	1123	163253											
C20orf185	359710	broad.mit.edu	37	chr20	31649701	31649701	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcctctttccccctctggTtttgggtgaagtttggcgcc	13	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31649701	A	A	31649701	1	1	207	0	1	0	0	0	0	0	0	0	2119	1740	60	5		5	C20orf185	20	31649701	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1238240	31649701	31375819	1124	163254											
PLUNC	51297	broad.mit.edu	37	chr20	31825969	31825969	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctggtggcctccttggggGactgcttggaaaagtgacgt	15	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31825969	T	T	31825969	3	4	207	1	0	0	0	0	1	0	0	0	12210	1174	41	3	275	3	PLUNC	20	31825969	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	176268	31825969	31199551	1125	163255											
CBFA2T2	9139	broad.mit.edu	37	chr20	32194618	32194618	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcacagttccagatgttggGatgtggacatatcttttagg	11	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32194618	A	A	32194618	1	1	207	0	1	0	0	0	0	0	0	0	2723	1189	41	4		4	CBFA2T2	20	32194618	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	368649	32194618	30830902	1126	163256											
ITCH	83737	broad.mit.edu	37	chr20	33028121	33028121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggccctaggccattaaatCctgtaactcaagctcccttg	7	14	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33028121	T	T	33028121	3	4	207	1	0	0	0	0	1	0	0	0	7938	855	30	4	867	4	ITCH	20	33028121	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	833503	33028121	29997399	1127	163257											
GGT7	2686	broad.mit.edu	37	chr20	33448152	33448152	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggcgggtaggcgagggagaGaggagaccaggtcactggaa	20	6	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33448152	C	C	33448152	1	2	207	0	1	0	0	0	0	0	0	0	6428	957	33	4		4	GGT7	20	33448152	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	420031	33448152	29577368	1128	163258											
FAM83C	128876	broad.mit.edu	37	chr20	33874942	33874942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctgtcggcctggcttgggGacaacctcctgtcctctggg	15	13	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33874942	T	T	33874942	3	4	207	1	0	0	0	0	1	0	0	0	5688	1174	41	3	607	3	FAM83C	20	33874942	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	426790	33874942	29150578	1129	163259											
RBM39	9584	broad.mit.edu	37	chr20	34295112	34295112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaacagaggcagctgcagCtaaagctgaagctaaaaaaa	10	8	0	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34295112	A	A	34295112	3	1	207	1	0	0	0	0	1	0	0	0	13241	797	28	3	371	3	RBM39	20	34295112	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	420170	34295112	28730408	1130	163260											
EPB41L1	2036	broad.mit.edu	37	chr20	34782249	34782249	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggctgaggagggagaGgtcaggactccaaccaagat	15	8	2	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34782249	T	T	34782249	3	4	207	1	0	0	0	0	1	0	0	0	5194	991	35	2	1458	2	EPB41L1	20	34782249	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	487137	34782249	28243271	1131	163261											
C20orf4	25980	broad.mit.edu	37	chr20	34843463	34843463	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctcgccccctgccctccGtcttctcaggagtgacttat	7	16	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34843463	A	A	34843463	1	1	207	0	1	0	0	0	0	0	0	0	2133	1160	40	4		4	C20orf4	20	34843463	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	61214	34843463	28182057	1132	163262											
NDRG3	57446	broad.mit.edu	37	chr20	35284696	35284696	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatctcaagaattgtgggctCccagatgtgaaactggctcc	10	10	1	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35284696	A	A	35284696	1	1	207	0	1	0	0	0	0	0	0	0	10348	870	30	3		3	NDRG3	20	35284696	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	441233	35284696	27740824	1133	163263											
SAMHD1	25939	broad.mit.edu	37	chr20	35545324	35545324	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atttatataaatattttagcCaacttttcagaagtgttcag	5	5	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35545324	G	G	35545324	1	3	207	0	1	0	0	0	0	0	0	0	13939	609	21	4		4	SAMHD1	20	35545324	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	260628	35545324	27480196	1134	163264											
SRC	6714	broad.mit.edu	37	chr20	36031099	36031099	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcatggtgcttatctaacAgagcggtcatgacaggaggt	12	9	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36031099	T	T	36031099	1	4	207	0	1	0	0	0	0	0	0	0	15252	203	7	5		5	SRC	20	36031099	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	485775	36031099	26994421	1135	163265											
DHX35	60625	broad.mit.edu	37	chr20	37612440	37612440	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagtttctttttgtgttgGaaagattctatctgtgttgt	11	3	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37612440	T	T	37612440	1	4	207	0	1	0	0	0	0	0	0	0	4548	1189	41	3		3	DHX35	20	37612440	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1581341	37612440	25413080	1136	163266											
JPH2	57158	broad.mit.edu	37	chr20	42747043	42747043	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtttctgagactcacgggCatccaggaaaccacttgggc	11	12	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42747043	A	A	42747043	1	1	207	0	1	0	0	0	0	0	0	0	8031	725	25	3		3	JPH2	20	42747043	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	5134603	42747043	20278477	1137	163267											
HNF4A	3172	broad.mit.edu	37	chr20	43034554	43034554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctccaaaaagtcaggaGgtcactgagtggggaggtga	16	6	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43034554	T	T	43034554	1	4	207	0	1	0	0	0	0	0	0	0	7320	1015	35	2		2	HNF4A	20	43034554	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	287511	43034554	19990966	1138	163268											
ADA	100	broad.mit.edu	37	chr20	43253074	43253074	+	Intron	DEL	C	-	-													ccccccatgggaggccagcaCaaaacagggctcagtgtctt							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43253074	-	-	43253074	6	5	207	0	1	1	0	1	0	0	0	0	230	493	17	0		0	ADA	20	43253074	Intron	DEL	C	TCGA-73-4668-01A-01D-1265-08	218520	43253074	19772446	1139	163269											
STK4	6789	broad.mit.edu	37	chr20	43703613	43703613	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctgcactgttctgccActgacttaagctttgtcgtg	10	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43703613	T	T	43703613	1	4	207	0	1	0	0	0	0	0	0	0	15424	174	6	5		5	STK4	20	43703613	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	450539	43703613	19321907	1140	163270											
ZMYND8	23613	broad.mit.edu	37	chr20	45920619	45920619	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttccaatggaacgggcttcTggaatgcatctgtctataaa	10	8	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45920619	A	A	45920619	3	1	207	1	0	0	0	0	1	0	0	0	17837	1580	55	5	3057	5	ZMYND8	20	45920619	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	2217006	45920619	17104901	1141	163271											
KCNB1	3745	broad.mit.edu	37	chr20	47990041	47990041	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atggtacatccctagaacggGgaggagtggactggggtcac	16	8	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47990041	C	C	47990041	3	2	207	1	0	0	0	0	1	0	0	0	8082	1232	43	4	524	4	KCNB1	20	47990041	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2069422	47990041	15035479	1142	163272											
BCAS1	8537	broad.mit.edu	37	chr20	52601782	52601782	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagaaataagttctggagtcAtccccgcccggacgactctc	9	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52601782	T	T	52601782	1	4	207	0	1	0	0	0	0	0	0	0	1355	232	8	5		5	BCAS1	20	52601782	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	4611741	52601782	10423738	1143	163273											
MC3R	4159	broad.mit.edu	37	chr20	54824013	54824013	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agcgccttctgtgagcaggtCttcatcaagcccgaggtttt	11	11	4	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54824013	A	A	54824013	2	1	207	1	0	0	0	0	0	0	0	1	9458	900	32	3		3	MC3R	20	54824013	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	2222231	54824013	8201507	1144	163274											
RAE1	8480	broad.mit.edu	37	chr20	55948682	55948682	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatttcactggacttttttTaacaaaggaagacttacatg	7	6	1	2	rs34667817		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55948682	C	C	55948682	1	2	207	0	1	0	0	0	0	0	0	0	13106	1769	61	5		5	RAE1	20	55948682	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1124669	55948682	7076838	1145	163275											
STX16	8675	broad.mit.edu	37	chr20	57244382	57244382	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtgccgtgcaggccctGccgagccgggcccgggcctg	17	17	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57244382	T	T	57244382	2	4	207	1	0	0	0	0	0	0	0	1	15457	1306	46	3		3	STX16	20	57244382	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	1295700	57244382	5781138	1146	163276											
GNAS	2778	broad.mit.edu	37	chr20	57430234	57430234	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctctcaaggtcaagaaGgtacccctggcggagaagcg	13	12	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57430234	T	T	57430234	3	4	207	1	0	0	0	0	1	0	0	0	6574	1000	35	2	2658	2	GNAS	20	57430234	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	185852	57430234	5595286	1147	163277											
ZNF831	128611	broad.mit.edu	37	chr20	57766376	57766376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagcctgaagggcctgGccccacccaggtggggaagc	16	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57766376	T	T	57766376	3	4	207	1	0	0	0	0	1	0	0	0	18314	1203	42	3	304	3	ZNF831	20	57766376	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	336142	57766376	5259144	1148	163278											
ZNF831	128611	broad.mit.edu	37	chr20	57767202	57767202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgccgagtccgagggggaGggcggcccgggcccggggcc	22	14	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57767202	T	T	57767202	3	4	207	1	0	0	0	0	1	0	0	0	18314	991	35	2	1130	2	ZNF831	20	57767202	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	826	57767202	5258318	1149	163279											
EDN3	1908	broad.mit.edu	37	chr20	57899558	57899558	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctcgggaggcttctgtcaTtgctcacacacagttcagat	10	11	5	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57899558	C	C	57899558	1	2	207	0	1	0	0	0	0	0	0	0	4958	1508	52	5		5	EDN3	20	57899558	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	132356	57899558	5125962	1150	163280											
CDH4	1002	broad.mit.edu	37	chr20	60348202	60348202	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgcccatcaacgtgcccgaGaactcgcgcgggcccttccc	10	20	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60348202	T	T	60348202	3	4	207	1	0	0	0	0	1	0	0	0	3142	933	33	3	554	3	CDH4	20	60348202	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2448644	60348202	2677318	1151	163281											
LAMA5	3911	broad.mit.edu	37	chr20	60889319	60889319	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcgaacgggcaagggccCtgcagttggaggcatccggc	17	11	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60889319	T	T	60889319	1	4	207	0	1	0	0	0	0	0	0	0	8681	696	24	4		4	LAMA5	20	60889319	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	541117	60889319	2136201	1152	163282											
LAMA5	3911	broad.mit.edu	37	chr20	60892742	60892742	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcctggtccaggctgtgCagcaatctgaagacgctggc	13	11	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60892742	A	A	60892742	2	1	207	1	0	0	0	0	0	0	0	1	8681	697	25	3		3	LAMA5	20	60892742	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	3423	60892742	2132778	1153	163283											
SRMS	6725	broad.mit.edu	37	chr20	62174827	62174827	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggcagaccttggcctggGcccggactaggaagggttca	16	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62174827	T	T	62174827	3	4	207	1	0	0	0	0	1	0	0	0	15270	1203	42	3	1005	3	SRMS	20	62174827	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	1282085	62174827	850693	1154	163284											
GMEB2	26205	broad.mit.edu	37	chr20	62224331	62224331	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccaccaccccgccagggCttgtgagaagcccacaagga	10	16	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62224331	A	A	62224331	1	1	207	0	1	0	0	0	0	0	0	0	6552	812	28	3		3	GMEB2	20	62224331	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	49504	62224331	801189	1155	163285											
MYT1	4661	broad.mit.edu	37	chr20	62842717	62842717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagctctgtgcagcgttaGccctaactgtgaagctcacg	11	11	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62842717	T	T	62842717	1	4	207	0	1	0	0	0	0	0	0	0	10200	986	34	3		3	MYT1	20	62842717	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	618386	62842717	182803	1156	163286											
TPTE	7179	broad.mit.edu	37	chr21	10971220	10971220	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagggtatcggcctgcttcAgcctcccaaagtgctcagat	10	13	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10971220	T	T	10971220	1	4	207	0	1	0	0	0	0	0	0	0	16554	203	7	5		5	TPTE	21	10971220	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08		10971220	37158675	1157	163287											
SAMSN1	64092	broad.mit.edu	37	chr21	15884755	15884755	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggatcttgtccctgattcaTtagccttacttgatgagctc	8	10	2	3			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15884755	A	A	15884755	1	1	207	0	1	0	0	0	0	0	0	0	13941	1508	52	5		5	SAMSN1	21	15884755	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	4913535	15884755	32245140	1158	163288											
TMPRSS15	5651	broad.mit.edu	37	chr21	19737572	19737572	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacaaactgtggctgcaaAacgatgccaattaatgttag	8	8	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19737572	G	G	19737572	1	3	207	0	1	0	0	0	0	0	0	0	16369	29	1	5		5	TMPRSS15	21	19737572	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	3852817	19737572	28392323	1159	163289											
CYYR1	116159	broad.mit.edu	37	chr21	27840721	27840721	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acattatctgaccccaaaaaGtattccttggagcaattctt	5	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27840721	T	T	27840721	1	4	207	0	1	0	0	0	0	0	0	0	4244	1044	36	3		3	CYYR1	21	27840721	3'UTR	SNP	G	TCGA-73-4668-01A-01D-1265-08	8103149	27840721	20289174	1160	163290											
N6AMT1	29104	broad.mit.edu	37	chr21	30252380	30252380	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtttttgggaaaataatgTgttacgggctacgcttgtag	12	4	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30252380	A	A	30252380	1	1	207	0	1	0	0	0	0	0	0	0	10208	1711	59	5		5	N6AMT1	21	30252380	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	2411659	30252380	17877515	1161	163291											
BACH1	571	broad.mit.edu	37	chr21	30698503	30698503	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taagtgtacataatattgagGaatcctgctttcagtttctg	8	6	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30698503	T	T	30698503	4	4	207	1	0	0	0	0	0	1	0	0	1288	1175	41	3	364	3	BACH1	21	30698503	Nonsense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	446123	30698503	17431392	1162	163292											
PCP4	5121	broad.mit.edu	37	chr21	41300875	41300875	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcctattttcagctcagTgattgccttctgtttgtgtt	7	9	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41300875	G	G	41300875	1	3	207	0	1	0	0	0	0	0	0	0	11692	1711	59	5		5	PCP4	21	41300875	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	10602372	41300875	6829020	1163	163293											
POTEH	23784	broad.mit.edu	37	chr22	16270055	16270055	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatttcataaattgagtgtTtaatctttcatgaaattgtc	5	4	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16270055	A	A	16270055	1	1	207	0	1	0	0	0	0	0	0	0	12363	1856	64	5		5	POTEH	22	16270055	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08		16270055	35034511	1164	163294											
SLC7A4	6545	broad.mit.edu	37	chr22	21383872	21383872	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctcactcaccatgcagAaaggggtgcgggatgggtgt	16	8	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21383872	T	T	21383872	1	4	207	0	1	0	0	0	0	0	0	0	14813	261	9	5		5	SLC7A4	22	21383872	Intron	SNP	A	TCGA-73-4668-01A-01D-1265-08	5113817	21383872	29920694	1165	163295											
MICALL1	85377	broad.mit.edu	37	chr22	38308323	38308323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcctcttcctgcttcGgctgctcccgcccttgtacc	6	21	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38308323	T	T	38308323	1	4	207	0	1	0	0	0	0	0	0	0	9666	1131	39	1		1	MICALL1	22	38308323	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	16924451	38308323	12996243	1166	163296											
APOBEC3D	140564	broad.mit.edu	37	chr22	39410221	39410221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacaccagtgcctgagcaGgaatggggaggggccatgat	15	11	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39410221	T	T	39410221	1	4	207	0	1	0	0	0	0	0	0	0	794	1015	35	2		2	APOBEC3D	22	39410221	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1101898	39410221	11894345	1167	163297											
APOBEC3F	200316	broad.mit.edu	37	chr22	39448532	39448532	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggagggcccagggctGggagagaagcctgctgggcc	22	9	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39448532	T	T	39448532	1	4	207	0	1	0	0	0	0	0	0	0	795	1363	47	2		2	APOBEC3F	22	39448532	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	38311	39448532	11856034	1168	163298											
CACNA1I	8911	broad.mit.edu	37	chr22	40066860	40066860	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtcacacccggctgctcatCcactccatgtgcaccagcca	7	18	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40066860	A	A	40066860	2	1	207	1	0	0	0	0	0	0	0	1	2572	845	30	3		3	CACNA1I	22	40066860	Silent	SNP	C	TCGA-73-4668-01A-01D-1265-08	618328	40066860	11237706	1169	163299											
MEI1	150365	broad.mit.edu	37	chr22	42191478	42191478	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgatgttctgcaaggtGtggctttggctgacctgtct	15	7	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42191478	A	A	42191478	3	1	207	1	0	0	0	0	1	0	0	0	9558	1377	48	4	3712	4	MEI1	22	42191478	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	2124618	42191478	9113088	1170	163300											
TTC38	55020	broad.mit.edu	37	chr22	46679823	46679823	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacatttgtttttttcccaTaggccttcagacttttcata	4	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46679823	A	A	46679823	1	1	207	0	1	0	0	0	0	0	0	0	16832	1421	49	5		5	TTC38	22	46679823	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	4488345	46679823	4624743	1171	163301											
SLC25A6	293	broad.mit.edu	37	chrX	1508155	1508155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggccgtatcgtacacgcCgaagtaggccgcccggtaga	13	13	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1508155	A	A	1508155	3	1	207	1	0	0	0	0	1	0	0	0	14627	652	23	1	331	1	SLC25A6	23	1508155	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08		1508155	153762405	1172	163302											
ARHGAP6	395	broad.mit.edu	37	chrX	11272834	11272834	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgaaatcaccctgtagGccaaaaaaaaaaaaaaaaaa	6	7	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11272834	A	A	11272834	1	1	207	0	1	0	0	0	0	0	0	0	889	1218	42	4		4	ARHGAP6	23	11272834	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	9764679	11272834	143997726	1173	163303											
FRMPD4	9758	broad.mit.edu	37	chrX	12735610	12735610	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcagttcttgttttttaCggcatgcaggtgtagccatc	9	8	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12735610	A	A	12735610	1	1	207	0	1	0	0	0	0	0	0	0	6119	551	19	3		3	FRMPD4	23	12735610	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1462776	12735610	142534950	1174	163304											
FANCB	2187	broad.mit.edu	37	chrX	14871431	14871431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatacttctcagagcaaaaCagttttgtttatagatttta	5	5	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14871431	A	A	14871431	1	1	207	0	1	0	0	0	0	0	0	0	5720	493	17	3		3	FANCB	23	14871431	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	2135821	14871431	140399129	1175	163305											
DDX53	168400	broad.mit.edu	37	chrX	23019064	23019064	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagagcaaaggaatgggcCtgggatgctagtccttacac	13	8	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23019064	A	A	23019064	3	1	207	1	0	0	0	0	1	0	0	0	4404	681	24	2	892	2	DDX53	23	23019064	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	8147633	23019064	132251496	1176	163306											
DMD	1756	broad.mit.edu	37	chrX	32305815	32305815	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgtagactatcttttaTattctgtaatataaaaattt	4	3	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32305815	A	A	32305815	3	1	207	1	0	0	0	0	1	0	0	0	4620	1406	49	5	5232	5	DMD	23	32305815	Missense_Mutation	SNP	T	TCGA-73-4668-01A-01D-1265-08	9286751	32305815	122964745	1177	163307											
DMD	1756	broad.mit.edu	37	chrX	32503158	32503158	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctctttcagggctatgCtttgaatttttaatcgttca	6	8	3	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32503158	T	T	32503158	3	4	207	1	0	0	0	0	1	0	0	0	4620	797	28	4	8855	4	DMD	23	32503158	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	197343	32503158	122767402	1178	163308											
FAM47A	158724	broad.mit.edu	37	chrX	34149272	34149272	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttggaaggctccgcgtggAgactggacccccgacgagtc	14	13	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34149272	G	G	34149272	3	3	207	1	0	0	0	0	1	0	0	0	5620	304	11	5	1255	5	FAM47A	23	34149272	Missense_Mutation	SNP	A	TCGA-73-4668-01A-01D-1265-08	1646114	34149272	121121288	1179	163309											
CXorf22	170063	broad.mit.edu	37	chrX	36003982	36003982	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccctcggggctctacacaGcctggagtcctgccccttcc	9	18	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36003982	A	A	36003982	1	1	207	0	1	0	0	0	0	0	0	0	4135	986	34	4		4	CXorf22	23	36003982	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1854710	36003982	119266578	1180	163310											
CXorf59	286464	broad.mit.edu	37	chrX	36091257	36091257	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaactaattttaattttaggAgtggaagtactgcctgaaaa	8	4	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36091257	T	T	36091257	2	4	207	1	0	0	0	0	0	0	0	1	4148	318	11	5		5	CXorf59	23	36091257	Silent	SNP	A	TCGA-73-4668-01A-01D-1265-08	87275	36091257	119179303	1181	163311											
FAM47C	442444	broad.mit.edu	37	chrX	37028890	37028890	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtccagtctccgcctggagCctcccaagactggtcgggtg	13	14	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37028890	A	A	37028890	3	1	207	1	0	0	0	0	1	0	0	0	5622	739	26	3	2409	3	FAM47C	23	37028890	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	937633	37028890	118241670	1182	163312											
SSX5	6758	broad.mit.edu	37	chrX	48051815	48051815	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattctgcagcagaggttatGagtccactgattgttgagga	12	7	1	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48051815	C	C	48051815	1	2	207	0	1	0	0	0	0	0	0	0	15326	1305	45	4		4	SSX5	23	48051815	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	11022925	48051815	107218745	1183	163313											
SSX5	6758	broad.mit.edu	37	chrX	48054861	48054861	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagctgcaggacctttggtCccatggagggagaaatcagt	13	10	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48054861	A	A	48054861	1	1	207	0	1	0	0	0	0	0	0	0	15326	870	30	3		3	SSX5	23	48054861	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	3046	48054861	107215699	1184	163314											
GRIPAP1	56850	broad.mit.edu	37	chrX	48837568	48837568	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggactaacctgcagcctgCaggcccaggccctacctccc	9	19	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48837568	T	T	48837568	1	4	207	0	1	0	0	0	0	0	0	0	6855	725	25	4		4	GRIPAP1	23	48837568	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	782707	48837568	106432992	1185	163315											
CACNA1F	778	broad.mit.edu	37	chrX	49068815	49068815	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatagatgcacaggctcagGcaaagaactataagccccag	10	10	1	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49068815	A	A	49068815	1	1	207	0	1	0	0	0	0	0	0	0	2569	1218	42	4		4	CACNA1F	23	49068815	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	231247	49068815	106201745	1186	163316											
PJA1	64219	broad.mit.edu	37	chrX	68381937	68381937	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tggaggacagggtttgctctCggcttcgatatttccgacgc	13	10	1	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68381937	G	G	68381937	3	3	207	1	0	0	0	0	1	0	0	0	12056	884	31	4	790	4	PJA1	23	68381937	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	19313122	68381937	86888623	1187	163317											
ITM2A	9452	broad.mit.edu	37	chrX	78616643	78616643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttggggaagtgtctaatcttCcagcatttatcaatggcacg	10	8	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78616643	A	A	78616643	3	1	207	1	0	0	0	0	1	0	0	0	7982	856	30	3	60	3	ITM2A	23	78616643	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	10234706	78616643	76653917	1188	163318											
BRWD3	254065	broad.mit.edu	37	chrX	79946453	79946453	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaattttggtgtgggtctttTggatgatcatgttatactat	10	3	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79946453	C	C	79946453	1	2	207	0	1	0	0	0	0	0	0	0	1535	1827	63	5		5	BRWD3	23	79946453	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	1329810	79946453	75324107	1189	163319											
POF1B	79983	broad.mit.edu	37	chrX	84622681	84622681	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaacaaatctaatgtaatTcacaacttcttttacctgtt	4	8	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84622681	A	A	84622681	1	1	207	0	1	0	0	0	0	0	0	0	12277	1798	62	5		5	POF1B	23	84622681	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	4676228	84622681	70647879	1190	163320											
POF1B	79983	broad.mit.edu	37	chrX	84634096	84634096	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagatatcctgtggaataGaggcaaagaagcagaaagga	12	4	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84634096	T	T	84634096	1	4	207	0	1	0	0	0	0	0	0	0	12277	957	33	3		3	POF1B	23	84634096	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	11415	84634096	70636464	1191	163321											
DACH2	117154	broad.mit.edu	37	chrX	86054046	86054046	+	Intron	SNP	G	T	T													atttgcagattttatagcagGtggtattctttcccaaagat							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86054046	T	T	86054046	1	4	207	0	1	0	0	0	0	0	0	0	4254	1276	44	3		3	DACH2	23	86054046	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	1419950	86054046	69216514	1192	163322	690	2									
DACH2	117154	broad.mit.edu	37	chrX	86054054	86054054	+	Intron	SNP	C	G	G													attttatagcaggtggtattCtttcccaaagatatcttgga							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86054054	G	G	86054054	1	3	207	0	1	0	0	0	0	0	0	0	4254	928	32	4		4	DACH2	23	86054054	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	8	86054054	69216506	1193	163323	690	2									
TGIF2LX	90316	broad.mit.edu	37	chrX	89177700	89177700	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgtcttctccagaacttGtgtctccagaggagcacgcc	9	16	3	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177700	A	A	89177700	3	1	207	1	0	0	0	0	1	0	0	0	15950	1377	48	4	618	4	TGIF2LX	23	89177700	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	3123646	89177700	66092860	1194	163324											
PCDH11X	27328	broad.mit.edu	37	chrX	91714645	91714646	+	Intron	DNP	TC	AA	AA													aaagcctgagtcctgtcctaTctctctcctccccggacagc							TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	91714646	AA	AA	91714645	1	1	207	0	1	0	0	0	0	0	0	0	11602	1450	50	5		5	PCDH11X	23	91714645	Intron	DNP	TC	TCGA-73-4668-01A-01D-1265-08	2536945	91714645	63555915	1195	163325											
PCDH11X	27328	broad.mit.edu	37	chrX	91715982	91715982	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggtaccctttggggagCaggaggccaataaaaagtac	14	8	0	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91715982	A	A	91715982	1	1	207	0	1	0	0	0	0	0	0	0	11602	725	25	3		3	PCDH11X	23	91715982	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1337	91715982	63554578	1196	163326											
DIAPH2	1730	broad.mit.edu	37	chrX	96724772	96724772	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgttttaaacaggattGggtgatggtacaacatgact	12	5	0	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96724772	T	T	96724772	1	4	207	0	1	0	0	0	0	0	0	0	4559	1363	47	2		2	DIAPH2	23	96724772	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	5008790	96724772	58545788	1197	163327											
NXF5	55998	broad.mit.edu	37	chrX	101092839	101092839	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaagaggagcaggagtgGgtggtccggccagtgtgggc	20	6	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101092839	T	T	101092839	1	4	207	0	1	0	0	0	0	0	0	0	10881	1247	43	2		2	NXF5	23	101092839	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	4368067	101092839	54177721	1198	163328											
COL4A6	1288	broad.mit.edu	37	chrX	107418540	107418540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcccataccaccacagCcctcttttggggcctttcca	5	17	2	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107418540	A	A	107418540	1	1	207	0	1	0	0	0	0	0	0	0	3727	754	26	3		3	COL4A6	23	107418540	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	6325701	107418540	47852020	1199	163329											
COL4A5	1287	broad.mit.edu	37	chrX	107840652	107840652	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctttcctggatctaaaGgtgaacctggtgatatcctc	10	10	1	2	rs104886126		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107840652	A	A	107840652	3	1	207	1	0	0	0	0	1	0	0	0	3726	1000	35	4	1727	4	COL4A5	23	107840652	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	422112	107840652	47429908	1200	163330											
CHRDL1	91851	broad.mit.edu	37	chrX	109924833	109924833	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggcatcgtttcttcccCgcagaagtagcctttattgt	8	12	1	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109924833	T	T	109924833	3	4	207	1	0	0	0	0	1	0	0	0	3404	652	23	4	355	4	CHRDL1	23	109924833	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	2084181	109924833	45345727	1201	163331											
LHFPL1	340596	broad.mit.edu	37	chrX	111904016	111904016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtcaccccaacattccCtttggattagttcagctcaa	5	13	4	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111904016	A	A	111904016	1	1	207	0	1	0	0	0	0	0	0	0	8836	696	24	2		2	LHFPL1	23	111904016	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	1979183	111904016	43366544	1202	163332											
AMOT	154796	broad.mit.edu	37	chrX	112022354	112022354	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagctggagttggagccaCagccggagctgaagttggtg	18	7	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112022354	T	T	112022354	3	4	207	1	0	0	0	0	1	0	0	0	582	478	17	4	234	4	AMOT	23	112022354	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	118338	112022354	43248206	1203	163333											
PLS3	5358	broad.mit.edu	37	chrX	114874743	114874743	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaaagcctatttccatctTctcaatcaaatcgcaccaaa	2	14	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114874743	A	A	114874743	2	1	207	1	0	0	0	0	0	0	0	1	12203	1770	62	5		5	PLS3	23	114874743	Silent	SNP	T	TCGA-73-4668-01A-01D-1265-08	2852389	114874743	40395817	1204	163334											
ODZ1	10178	broad.mit.edu	37	chrX	123780638	123780638	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccatttccattgcaattGgttgaacagtcatccattat	5	10	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123780638	A	A	123780638	2	1	207	1	0	0	0	0	0	0	0	1	10929	1335	47	4		4	ODZ1	23	123780638	Silent	SNP	G	TCGA-73-4668-01A-01D-1265-08	8905895	123780638	31489922	1205	163335											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298530	125298530	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatccttaactccagaggcCtgcgtagttcccatggaggc	10	14	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125298530	A	A	125298530	3	1	207	1	0	0	0	0	1	0	0	0	4298	681	24	2	17	2	DCAF12L2	23	125298530	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	1517892	125298530	29972030	1206	163336											
RBMX2	51634	broad.mit.edu	37	chrX	129545489	129545489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaaaaccaacaaaaaaGcacaaaaaaggtaaagcatt	6	6	0	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129545489	T	T	129545489	3	4	207	1	0	0	0	0	1	0	0	0	13260	962	34	3	489	3	RBMX2	23	129545489	Missense_Mutation	SNP	G	TCGA-73-4668-01A-01D-1265-08	4246959	129545489	25725071	1207	163337											
CXorf48	54967	broad.mit.edu	37	chrX	134303771	134303771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctactacaagtaagtcttaCactcaccatctgcataaccc	3	15	3	0			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134303771	A	A	134303771	1	1	207	0	1	0	0	0	0	0	0	0	4144	493	17	3		3	CXorf48	23	134303771	Intron	SNP	C	TCGA-73-4668-01A-01D-1265-08	4758282	134303771	20966789	1208	163338											
DDX26B	203522	broad.mit.edu	37	chrX	134711002	134711002	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaaatgaaagaaaaaaaGacatattcgtgatataatgc	6	3	0	4			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134711002	T	T	134711002	1	4	207	0	1	0	0	0	0	0	0	0	4386	957	33	3		3	DDX26B	23	134711002	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	407231	134711002	20559558	1209	163339											
SAGE1	55511	broad.mit.edu	37	chrX	134988009	134988009	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcatgcagggaagaaggTggtttcgttttattatcttt	12	4	2	1			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134988009	A	A	134988009	1	1	207	0	1	0	0	0	0	0	0	0	13920	1711	59	5		5	SAGE1	23	134988009	Intron	SNP	T	TCGA-73-4668-01A-01D-1265-08	277007	134988009	20282551	1210	163340											
NSDHL	50814	broad.mit.edu	37	chrX	152034206	152034206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagccactgatgtaggttGtcagctcaaggcagaccact	10	12	2	2			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152034206	T	T	152034206	1	4	207	0	1	0	0	0	0	0	0	0	10765	1392	48	3		3	NSDHL	23	152034206	Intron	SNP	G	TCGA-73-4668-01A-01D-1265-08	17046197	152034206	3236354	1211	163341											
IL9R	3581	broad.mit.edu	37	chrX	155235036	155235036	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatccatgaggccaggctgCgtgtccagatggccacactg	12	12	0	2	rs140130676	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155235036	T	T	155235036	3	4	207	1	0	0	0	0	1	0	0	0	7778	768	27	4	695	4	IL9R	23	155235036	Missense_Mutation	SNP	C	TCGA-73-4668-01A-01D-1265-08	3200830	155235036	35524	1212	163342											
PANK4	55229	broad.mit.edu	37	chr1	2452903	2452903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcaagagggaggagcCtaggaccgtggcgacctcag	17	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2452903	T	T	2452903	1	4	208	0	1	0	0	0	0	0	0	0	11513	696	24	4		4	PANK4	1	2452903	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08		2452903	246797718	1	163343											
CAMTA1	23261	broad.mit.edu	37	chr1	7806269	7806269	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttcctctgaatttgtagAatttttttggaagtctccaa	6	6	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7806269	G	G	7806269	1	3	208	0	1	0	0	0	0	0	0	0	2639	261	9	5		5	CAMTA1	1	7806269	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	5353366	7806269	241444352	2	163344											
CLCN6	1185	broad.mit.edu	37	chr1	11900189	11900189	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaggtgactcaggccttctCtttgccctagatcgtgggga	13	10	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11900189	T	T	11900189	1	4	208	0	1	0	0	0	0	0	0	0	3498	928	32	4		4	CLCN6	1	11900189	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	4093920	11900189	237350432	3	163345											
TAS1R2	80834	broad.mit.edu	37	chr1	19184031	19184031	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgatctcatagcccagcaGcacaccaggcagcaggctgc	10	16	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19184031	T	T	19184031	3	4	208	1	0	0	0	0	1	0	0	0	15682	962	34	3	2262	3	TAS1R2	1	19184031	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	7283842	19184031	230066590	4	163346											
NBL1	4681	broad.mit.edu	37	chr1	19923454	19923454	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcctgccttcctgacctgGgacttgtttccagctctcgc	10	16	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19923454	T	T	19923454	1	4	208	0	1	0	0	0	0	0	0	0	10284	1247	43	2		2	NBL1	1	19923454	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	739423	19923454	229327167	5	163347											
PLA2G2E	30814	broad.mit.edu	37	chr1	20249235	20249235	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaactgaaccaggttcccGgtgaccagagccactgcaga	10	14	0	4	rs146848577	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20249235	T	T	20249235	2	4	208	1	0	0	0	0	0	0	0	1	12093	1103	39	1		1	PLA2G2E	1	20249235	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	325781	20249235	229001386	6	163348											
EIF4G3	8672	broad.mit.edu	37	chr1	21205816	21205816	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actccttcctctcttcttacCgttactagacatcgacacat	3	15	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21205816	A	A	21205816	2	1	208	1	0	0	0	0	0	0	0	1	5080	666	23	1		1	EIF4G3	1	21205816	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	956581	21205816	228044805	7	163349											
EIF3I	8668	broad.mit.edu	37	chr1	32694555	32694555	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagaggagtgacaaagCtggaaggattgaatagcccc	13	9	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32694555	G	G	32694555	1	3	208	0	1	0	0	0	0	0	0	0	5061	812	28	4		4	EIF3I	1	32694555	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	11488739	32694555	216556066	8	163350											
HMGB4	127540	broad.mit.edu	37	chr1	34330145	34330145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagggagaacccgaactGgtcggtggtgcaggtggcca	18	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34330145	T	T	34330145	3	4	208	1	0	0	0	0	1	0	0	0	7295	1357	47	2	355	2	HMGB4	1	34330145	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1635590	34330145	214920476	9	163351											
MFSD2A	84879	broad.mit.edu	37	chr1	40431306	40431306	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggtccagctctttgctctGctctagagtgtgggtgtgaa	14	9	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40431306	C	C	40431306	1	2	208	0	1	0	0	0	0	0	0	0	9623	1334	46	4		4	MFSD2A	1	40431306	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	6101161	40431306	208819315	10	163352											
SMAP2	64744	broad.mit.edu	37	chr1	40875515	40875515	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatgcctttagggttggttAtacatctttcaagttttgtc	8	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40875515	T	T	40875515	1	4	208	0	1	0	0	0	0	0	0	0	14881	464	16	5		5	SMAP2	1	40875515	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	444209	40875515	208375106	11	163353											
CC2D1B	200014	broad.mit.edu	37	chr1	52826313	52826313	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgccctagaagatggagctCtgggactccaggagaaagaa	13	9	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52826313	A	A	52826313	1	1	208	0	1	0	0	0	0	0	0	0	2753	928	32	3		3	CC2D1B	1	52826313	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	11950798	52826313	196424308	12	163354											
YIPF1	54432	broad.mit.edu	37	chr1	54331952	54331952	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacgcgtcggttatcctcaCgaacagctggccaaaatgtc	9	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54331952	T	T	54331952	3	4	208	1	0	0	0	0	1	0	0	0	17604	536	19	4	176	4	YIPF1	1	54331952	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1505639	54331952	194918669	13	163355											
C1orf168	199920	broad.mit.edu	37	chr1	57233710	57233710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaataatatgtgtgtctGgccaatatggtgacctaagc	11	6	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57233710	T	T	57233710	1	4	208	0	1	0	0	0	0	0	0	0	2032	1363	47	2		2	C1orf168	1	57233710	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2901758	57233710	192016911	14	163356											
DAB1	1600	broad.mit.edu	37	chr1	57537224	57537224	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcttgttcacactgcttatCcttttgtgcctttttttcta	5	10	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57537224	A	A	57537224	3	1	208	1	0	0	0	0	1	0	0	0	4250	855	30	3	1174	3	DAB1	1	57537224	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	303514	57537224	191713397	15	163357											
C1orf87	127795	broad.mit.edu	37	chr1	60466896	60466896	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatttaacacacacatataCacaaggcaacaacaacagca	3	12	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60466896	G	G	60466896	1	3	208	0	1	0	0	0	0	0	0	0	2086	493	17	4		4	C1orf87	1	60466896	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2929672	60466896	188783725	16	163358											
PDE4B	5142	broad.mit.edu	37	chr1	66798085	66798085	+	Intron	DEL	G	-	-													tgcaaataatgaaggagcacGggggcaccttcagtagcacc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66798085	-	-	66798085	6	5	208	0	1	1	0	1	0	0	0	0	11734	1116	39	0		0	PDE4B	1	66798085	Intron	DEL	G	TCGA-73-4670-01A-01D-1265-08	6331189	66798085	182452536	17	163359											
CTH	1491	broad.mit.edu	37	chr1	70890113	70890114	+	Intron	INS	-	T	T													ttccaggtaaatgaaaataaINSttttttttggcacaattagt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70890114	T	T	70890113	6	5	208	0	1	1	1	0	0	0	0	0	4043	116	4	0		0	CTH	1	70890113	Intron	INS	-	TCGA-73-4670-01A-01D-1265-08	4092028	70890113	178360508	18	163360											
PTGER3	5733	broad.mit.edu	37	chr1	71318405	71318405	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatatttgggggtgggcttGggggaagaagtaaaagagaa	17	1	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71318405	T	T	71318405	1	4	208	0	1	0	0	0	0	0	0	0	12850	1363	47	2		2	PTGER3	1	71318405	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	428292	71318405	177932216	19	163361											
ACADM	34	broad.mit.edu	37	chr1	76190449	76190450	+	5'UTR	DNP	CG	TC	TC													gtgacccgtgtattattgtcCgagtggccggaacgggagcc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	76190450	TC	TC	76190449	1	4	208	0	1	0	0	0	0	0	0	0	113	667	23	4		4	ACADM	1	76190449	5'UTR	DNP	CG	TCGA-73-4670-01A-01D-1265-08	4872044	76190449	173060172	20	163362											
MSH4	4438	broad.mit.edu	37	chr1	76349325	76349325	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcgaccagaatttactgaTactttagcaatcaaacaggg	8	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76349325	C	C	76349325	2	2	208	1	0	0	0	0	0	0	0	1	9966	1403	49	5		5	MSH4	1	76349325	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	158876	76349325	172901296	21	163363											
GIPC2	54810	broad.mit.edu	37	chr1	78578101	78578101	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcccattcttccctctgggCatctttgggctatttcttgt	7	12	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78578101	G	G	78578101	1	3	208	0	1	0	0	0	0	0	0	0	6457	725	25	4		4	GIPC2	1	78578101	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2228776	78578101	170672520	22	163364											
MCOLN2	255231	broad.mit.edu	37	chr1	85412596	85412596	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatattctttacaggatctaAtgctcgaggcggttttcttc	9	8	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85412596	G	G	85412596	1	3	208	0	1	0	0	0	0	0	0	0	9489	116	4	5		5	MCOLN2	1	85412596	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	6834495	85412596	163838025	23	163365											
CLCA2	9635	broad.mit.edu	37	chr1	86898239	86898239	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcccttggaatgacacactCttgcaggattccttctcttc	7	13	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86898239	A	A	86898239	1	1	208	0	1	0	0	0	0	0	0	0	3489	928	32	3		3	CLCA2	1	86898239	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1485643	86898239	162352382	24	163366											
CLCA2	9635	broad.mit.edu	37	chr1	86919278	86919278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagaagactttgatcaGggccagggtaggtttgctca	14	8	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86919278	T	T	86919278	3	4	208	1	0	0	0	0	1	0	0	0	3489	991	35	2	2432	2	CLCA2	1	86919278	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	21039	86919278	162331343	25	163367											
PTBP2	58155	broad.mit.edu	37	chr1	97278974	97278974	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caatttaaaaatgggaagatGaagattgggggtgaatcaca	12	3	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97278974	T	T	97278974	1	4	208	0	1	0	0	0	0	0	0	0	12832	1305	45	3		3	PTBP2	1	97278974	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	10359696	97278974	151971647	26	163368											
LPPR4	9890	broad.mit.edu	37	chr1	99766554	99766554	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttttttgttaagttgtGttctacagaaaatctgagga	9	4	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99766554	T	T	99766554	1	4	208	0	1	0	0	0	0	0	0	0	9014	1392	48	3		3	LPPR4	1	99766554	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2487580	99766554	149484067	27	163369											
LPPR4	9890	broad.mit.edu	37	chr1	99771933	99771933	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccccaaaagcagctctgcTcgggccaagtggttaaaagc	10	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99771933	C	C	99771933	2	2	208	1	0	0	0	0	0	0	0	1	9014	1538	54	5		5	LPPR4	1	99771933	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	5379	99771933	149478688	28	163370											
CCDC76	54482	broad.mit.edu	37	chr1	100605698	100605698	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttatgctactttaaagcAatttttggctacattattta	5	6	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100605698	C	C	100605698	1	2	208	0	1	0	0	0	0	0	0	0	2878	145	5	5		5	CCDC76	1	100605698	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	833765	100605698	148644923	29	163371											
SORT1	6272	broad.mit.edu	37	chr1	109878787	109878787	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taatcaagtatgaaacttcaTcatccaaaaggctggcactg	7	9	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109878787	A	A	109878787	1	1	208	0	1	0	0	0	0	0	0	0	15049	1450	50	5		5	SORT1	1	109878787	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	9273089	109878787	139371834	30	163372											
SYPL2	284612	broad.mit.edu	37	chr1	110020639	110020639	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacatctccgtggtgagacCtgtggccactgcaggaagca	12	12	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110020639	T	T	110020639	1	4	208	0	1	0	0	0	0	0	0	0	15582	696	24	4		4	SYPL2	1	110020639	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	141852	110020639	139229982	31	163373											
SLC6A17	388662	broad.mit.edu	37	chr1	110740251	110740251	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccccaaaccccagggaCatttgcatcttctcaggcct	10	15	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110740251	A	A	110740251	1	1	208	0	1	0	0	0	0	0	0	0	14794	493	17	3		3	SLC6A17	1	110740251	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	719612	110740251	138510370	32	163374											
C1orf88	128344	broad.mit.edu	37	chr1	111891101	111891101	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgtgtatatatatacataTcactctgtaacataatgatc	4	6	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111891101	C	C	111891101	1	2	208	0	1	0	0	0	0	0	0	0	2087	1450	50	5		5	C1orf88	1	111891101	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1150850	111891101	137359520	33	163375											
CHD1L	9557	broad.mit.edu	37	chr1	146747204	146747204	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaggtgaagaatataGtcctggtgacagtcccacac	10	8	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146747204	A	A	146747204	1	1	208	0	1	0	0	0	0	0	0	0	3355	1044	36	4		4	CHD1L	1	146747204	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	34856103	146747204	102503417	34	163376											
HIST2H2BF	440689	broad.mit.edu	37	chr1	149400204	149400204	+	5'Flank	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atggtcacgcgcttggcatgGatggcgcacaggttcgtgtc	15	10	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149400204	C	C	149400204	1	2	208	0	1	0	0	0	0	0	0	0	7247	1189	41	4		4	HIST2H2BF	1	149400204	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	2653000	149400204	99850417	35	163377											
SV2A	9900	broad.mit.edu	37	chr1	149883286	149883286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctggcactgtgctgggcCctaaagatacaacagtgacc	11	12	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149883286	A	A	149883286	1	1	208	0	1	0	0	0	0	0	0	0	15535	638	22	2		2	SV2A	1	149883286	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	483082	149883286	99367335	36	163378											
PLEKHO1	51177	broad.mit.edu	37	chr1	150131409	150131409	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aacccggggcagctgtcccgGatccaggacctggtagcaag	14	13	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150131409	A	A	150131409	2	1	208	1	0	0	0	0	0	0	0	1	12179	1161	41	4		4	PLEKHO1	1	150131409	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	248123	150131409	99119212	37	163379											
ANP32E	81611	broad.mit.edu	37	chr1	150201429	150201429	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcatcctcctcttcagagtCcggcgcttcattatcctcct	5	16	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150201429	A	A	150201429	3	1	208	1	0	0	0	0	1	0	0	0	709	855	30	3	353	3	ANP32E	1	150201429	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	70020	150201429	99049192	38	163380											
CTSK	1513	broad.mit.edu	37	chr1	150776740	150776740	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggcatacagagaaactatCaatctttgctgtttacattt	6	7	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150776740	T	T	150776740	1	4	208	0	1	0	0	0	0	0	0	0	4071	841	29	4		4	CTSK	1	150776740	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	575311	150776740	98473881	39	163381											
FLG	2312	broad.mit.edu	37	chr1	152280188	152280188	+	Frame_Shift_Del	DEL	G	-	-													ctcttggtggctctgctgatGgggcccagcctgtccgtggg							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	152280188	-	-	152280188	7	5	208	1	0	1	0	1	0	0	0	0	5979	1348	47	0	5015	0	FLG	1	152280188	Frame_Shift_Del	DEL	G	TCGA-73-4670-01A-01D-1265-08	1503448	152280188	96970433	40	163382											
KCNN3	3782	broad.mit.edu	37	chr1	154685909	154685909	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agactcagtgtctgcgtgttCtaggggatgtctccagacac	12	10	4	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154685909	G	G	154685909	1	3	208	0	1	0	0	0	0	0	0	0	8150	928	32	4		4	KCNN3	1	154685909	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2405721	154685909	94564712	41	163383											
ADAM15	8751	broad.mit.edu	37	chr1	155029330	155029330	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgcctgctgagtgcccacGaggtcagacgtggagggaac	16	10	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155029330	T	T	155029330	1	4	208	0	1	0	0	0	0	0	0	0	237	1073	37	3		3	ADAM15	1	155029330	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	343421	155029330	94221291	42	163384											
RUSC1	23623	broad.mit.edu	37	chr1	155297923	155297923	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtgggttgagctgtgaccCtatgtcccttcttttaggag	12	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155297923	G	G	155297923	1	3	208	0	1	0	0	0	0	0	0	0	13861	696	24	4		4	RUSC1	1	155297923	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	268593	155297923	93952698	43	163385											
INSRR	3645	broad.mit.edu	37	chr1	156813291	156813291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaacgggaggtgagggGgtcaggctggaagggttctc	19	7	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156813291	T	T	156813291	1	4	208	0	1	0	0	0	0	0	0	0	7844	1247	43	2		2	INSRR	1	156813291	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1515368	156813291	92437330	44	163386											
ARHGEF11	9826	broad.mit.edu	37	chr1	156911687	156911687	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggccctgctgggctggctCccggggacctgggggtggag	22	11	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156911687	A	A	156911687	4	1	208	1	0	0	0	0	0	1	0	0	898	864	30	3	1299	3	ARHGEF11	1	156911687	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	98396	156911687	92338934	45	163387											
CD1B	910	broad.mit.edu	37	chr1	158298651	158298651	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagataaaatggtaaaaaacAgtggaagggtgaacagaaaa	11	2	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158298651	T	T	158298651	1	4	208	0	1	0	0	0	0	0	0	0	3005	203	7	5		5	CD1B	1	158298651	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1386964	158298651	90951970	46	163388											
MNDA	4332	broad.mit.edu	37	chr1	158811866	158811866	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcactcacaaaagcatatctCattttttaaaattgtctgca	3	9	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158811866	A	A	158811866	1	1	208	0	1	0	0	0	0	0	0	0	9770	841	29	3		3	MNDA	1	158811866	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	513215	158811866	90438755	47	163389											
MNDA	4332	broad.mit.edu	37	chr1	158813622	158813622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagattgtaattccctgGggtttccaaggacatcccat	9	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158813622	T	T	158813622	1	4	208	0	1	0	0	0	0	0	0	0	9770	1247	43	2		2	MNDA	1	158813622	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1756	158813622	90436999	48	163390											
PYHIN1	149628	broad.mit.edu	37	chr1	158913669	158913669	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaggagaatgccacaatatCccctgtgaaaaaggagataa	9	7	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158913669	T	T	158913669	2	4	208	1	0	0	0	0	0	0	0	1	12973	845	30	4		4	PYHIN1	1	158913669	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	100047	158913669	90336952	49	163391											
NR1I3	9970	broad.mit.edu	37	chr1	161202760	161202760	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatgatcagaacattagctAgaggctctggccctagggcc	11	11	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161202760	G	G	161202760	1	3	208	0	1	0	0	0	0	0	0	0	10716	435	15	5		5	NR1I3	1	161202760	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	2289091	161202760	88047861	50	163392											
C1orf226	400793	broad.mit.edu	37	chr1	162353080	162353080	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatgctgatttcatcacaGcctgtcctcagcagtctgga	9	12	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162353080	T	T	162353080	3	4	208	1	0	0	0	0	1	0	0	0	2054	962	34	3	565	3	C1orf226	1	162353080	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1150320	162353080	86897541	51	163393											
RGS5	8490	broad.mit.edu	37	chr1	163138004	163138004	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctaaacacttggaaaatagCcatcctctggaggaaatgag	10	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163138004	G	G	163138004	1	3	208	0	1	0	0	0	0	0	0	0	13417	754	26	4		4	RGS5	1	163138004	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	784924	163138004	86112617	52	163394											
PBX1	5087	broad.mit.edu	37	chr1	164815781	164815781	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgaaaacagccacccAatctcagaggactgacttct	7	13	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164815781	T	T	164815781	1	4	208	0	1	0	0	0	0	0	0	0	11586	145	5	5		5	PBX1	1	164815781	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1677777	164815781	84434840	53	163395											
RXRG	6258	broad.mit.edu	37	chr1	165398198	165398198	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagagccagtgtggccagGggagcctgtaagaagaagaa	16	6	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165398198	T	T	165398198	3	4	208	1	0	0	0	0	1	0	0	0	13876	1232	43	2	1372	2	RXRG	1	165398198	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	582417	165398198	83852423	54	163396											
C1orf112	55732	broad.mit.edu	37	chr1	169816850	169816850	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcagtaactttgcagacctCgctacttaaattagagcttc	8	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169816850	T	T	169816850	3	4	208	1	0	0	0	0	1	0	0	0	2005	893	31	4	2034	4	C1orf112	1	169816850	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	4418652	169816850	79433771	55	163397											
PRRX1	5396	broad.mit.edu	37	chr1	170699423	170699423	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactttcaaaaatagatcctCgtccctcccaagatgttgtt	5	12	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170699423	A	A	170699423	1	1	208	0	1	0	0	0	0	0	0	0	12718	893	31	3		3	PRRX1	1	170699423	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	882573	170699423	78551198	56	163398											
BAT2L2	23215	broad.mit.edu	37	chr1	171536079	171536079	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcttttttttttcctgctgAggcatataactctatagatt	6	7	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171536079	T	T	171536079	1	4	208	0	1	0	0	0	0	0	0	0	1326	319	11	5		5	BAT2L2	1	171536079	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	836656	171536079	77714542	57	163399											
ASTN1	460	broad.mit.edu	37	chr1	176927511	176927511	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcatcctccatcacagtcAtgtccgtcttgcactttgct	6	15	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176927511	T	T	176927511	3	4	208	1	0	0	0	0	1	0	0	0	1068	217	8	5	2238	5	ASTN1	1	176927511	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	5391432	176927511	72323110	58	163400											
FAM5B	57795	broad.mit.edu	37	chr1	177250277	177250277	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgaatcaagtccctggatgaCagctccaatgagacaatcta	8	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	177250277	G	G	177250277	3	3	208	1	0	0	0	0	1	0	0	0	5644	477	17	4	1991	4	FAM5B	1	177250277	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	322766	177250277	72000344	59	163401											
KIAA1614	57710	broad.mit.edu	37	chr1	180910191	180910191	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtttcagagcatcagcaGgagctggcacaggacccggc	14	11	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180910191	A	A	180910191	3	1	208	1	0	0	0	0	1	0	0	0	8318	1001	35	4	2955	4	KIAA1614	1	180910191	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3659914	180910191	68340430	60	163402											
LAMC1	3915	broad.mit.edu	37	chr1	183101835	183101835	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtaagtagagaagggcAtgtgaagccacagagatttg	13	4	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183101835	G	G	183101835	1	3	208	0	1	0	0	0	0	0	0	0	8686	232	8	5		5	LAMC1	1	183101835	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	2191644	183101835	66148786	61	163403											
RGL1	23179	broad.mit.edu	37	chr1	183891506	183891506	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacaggcatgttccttcccAgggcaggtggctagcacatg	13	11	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183891506	T	T	183891506	1	4	208	0	1	0	0	0	0	0	0	0	13384	203	7	5		5	RGL1	1	183891506	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	789671	183891506	65359115	62	163404											
RGS18	64407	broad.mit.edu	37	chr1	192127897	192127897	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaatcaggtaaaattgtAcaattttaagtcagccttat	5	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	192127897	G	G	192127897	1	3	208	0	1	0	0	0	0	0	0	0	13409	406	14	5		5	RGS18	1	192127897	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	8236391	192127897	57122724	63	163405											
F13B	2165	broad.mit.edu	37	chr1	197036432	197036432	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtacacaatacttctcttGaggaaaaagttaataattta	5	5	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197036432	T	T	197036432	1	4	208	0	1	0	0	0	0	0	0	0	5384	1305	45	3		3	F13B	1	197036432	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	4908535	197036432	52214189	64	163406											
ASPM	259266	broad.mit.edu	37	chr1	197108022	197108022	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcttccttatctcctcctGttgaatcattttaagatgct	6	10	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197108022	A	A	197108022	1	1	208	0	1	0	0	0	0	0	0	0	1060	1392	48	4		4	ASPM	1	197108022	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	71590	197108022	52142599	65	163407											
ASPM	259266	broad.mit.edu	37	chr1	197112095	197112095	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcgaaacttcactttttctCcaatcttcaggagactgtgg	9	10	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197112095	T	T	197112095	4	4	208	1	0	0	0	0	0	1	0	0	1060	856	30	4	9250	4	ASPM	1	197112095	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	4073	197112095	52138526	66	163408											
PKP1	5317	broad.mit.edu	37	chr1	201291062	201291062	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtaggccaggagcctgtcGggccgggcagaggctcaggc	19	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201291062	A	A	201291062	1	1	208	0	1	0	0	0	0	0	0	0	12079	1131	39	4		4	PKP1	1	201291062	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	4178967	201291062	47959559	67	163409											
LGR6	59352	broad.mit.edu	37	chr1	202284117	202284117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgcagccacattctttGcctgactcccagcctgctgc	8	16	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202284117	T	T	202284117	1	4	208	0	1	0	0	0	0	0	0	0	8830	1334	46	3		3	LGR6	1	202284117	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	993055	202284117	46966504	68	163410											
PPFIA4	8497	broad.mit.edu	37	chr1	203012563	203012563	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggagctgagcatgtgtcgGgagcagcttctagagcggga	18	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203012563	C	C	203012563	2	2	208	1	0	0	0	0	0	0	0	1	12408	1247	43	4		4	PPFIA4	1	203012563	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	728446	203012563	46238058	69	163411											
NFASC	23114	broad.mit.edu	37	chr1	204923916	204923916	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccttgccccgggcccagCcatcaccctcactttatcct	6	20	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204923916	A	A	204923916	1	1	208	0	1	0	0	0	0	0	0	0	10454	754	26	3		3	NFASC	1	204923916	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1911353	204923916	44326705	70	163412											
CNTN2	6900	broad.mit.edu	37	chr1	205022456	205022456	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatccttgctatgatttgggTgacgattacagaaatcattg	9	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205022456	A	A	205022456	1	1	208	0	1	0	0	0	0	0	0	0	3673	1711	59	5		5	CNTN2	1	205022456	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	98540	205022456	44228165	71	163413											
DSTYK	25778	broad.mit.edu	37	chr1	205156672	205156672	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccctgatgagcaaccagCgtgtgcactagttcatactg	10	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205156672	A	A	205156672	2	1	208	1	0	0	0	0	0	0	0	1	4825	755	27	3		3	DSTYK	1	205156672	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	134216	205156672	44093949	72	163414											
PLXNA2	5362	broad.mit.edu	37	chr1	208390425	208390425	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcatccttgcagagccgCacgatgcgtgaggtgtagaa	15	9	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208390425	A	A	208390425	2	1	208	1	0	0	0	0	0	0	0	1	12215	697	25	3		3	PLXNA2	1	208390425	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	3233753	208390425	40860196	73	163415											
ANGEL2	90806	broad.mit.edu	37	chr1	213174123	213174123	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaaaatgtattacaaacaCttacctgtcttttctacttt	3	10	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	213174123	G	G	213174123	1	3	208	0	1	0	0	0	0	0	0	0	609	580	20	4		4	ANGEL2	1	213174123	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	4783698	213174123	36076498	74	163416											
USH2A	7399	broad.mit.edu	37	chr1	215955619	215955619	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aacttacaaatcttagtgttCggaagaaatgcaatactata	6	6	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215955619	T	T	215955619	1	4	208	0	1	0	0	0	0	0	0	0	17162	899	31	4		4	USH2A	1	215955619	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2781496	215955619	33295002	75	163417											
USH2A	7399	broad.mit.edu	37	chr1	216143891	216143891	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcagagggtgagtcaccGccacttacttcttccttaat	9	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216143891	A	A	216143891	1	1	208	0	1	0	0	0	0	0	0	0	17162	1102	38	4		4	USH2A	1	216143891	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	188272	216143891	33106730	76	163418											
USH2A	7399	broad.mit.edu	37	chr1	216380497	216380497	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgtaattttatctctgtttGaaacactctgtgccagacag	7	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216380497	T	T	216380497	1	4	208	0	1	0	0	0	0	0	0	0	17162	1305	45	3		3	USH2A	1	216380497	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	236606	216380497	32870124	77	163419											
ESRRG	2104	broad.mit.edu	37	chr1	216741515	216741515	+	Intron	DEL	C	-	-													atcaaatacctagatggtatCccccaagagcacataggtga							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	216741515	-	-	216741515	6	5	208	0	1	1	0	1	0	0	0	0	5304	870	30	0		0	ESRRG	1	216741515	Intron	DEL	C	TCGA-73-4670-01A-01D-1265-08	361018	216741515	32509106	78	163420											
SLC30A10	55532	broad.mit.edu	37	chr1	220088835	220088835	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattggtcctcctgagtttTgttaagactttgtccgtggt	10	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220088835	A	A	220088835	4	1	208	1	0	0	0	0	0	1	0	0	14668	1821	63	5	47	5	SLC30A10	1	220088835	Nonsense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	3347320	220088835	29161786	79	163421											
EPRS	2058	broad.mit.edu	37	chr1	220192222	220192222	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaaaaatctgcccttggatCataaggcacaaacaaggaat	7	8	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220192222	A	A	220192222	1	1	208	0	1	0	0	0	0	0	0	0	5233	841	29	3		3	EPRS	1	220192222	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	103387	220192222	29058399	80	163422											
LIN9	286826	broad.mit.edu	37	chr1	226485450	226485450	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagagcttgtattcctgccTttccaaacaggtgttttctg	9	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226485450	A	A	226485450	3	1	208	1	0	0	0	0	1	0	0	0	8886	1606	56	5	1551	5	LIN9	1	226485450	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	6293228	226485450	22765171	81	163423											
TARBP1	6894	broad.mit.edu	37	chr1	234565708	234565708	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagatgaataatgttatacCacactttcatcctgaatgga	7	7	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234565708	G	G	234565708	1	3	208	0	1	0	0	0	0	0	0	0	15674	609	21	4		4	TARBP1	1	234565708	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	8080258	234565708	14684913	82	163424											
LYST	1130	broad.mit.edu	37	chr1	235937105	235937105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgttatatgcattttacCacaataaaaaatggaaaaaa	5	4	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235937105	A	A	235937105	1	1	208	0	1	0	0	0	0	0	0	0	9216	609	21	2		2	LYST	1	235937105	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1371397	235937105	13313516	83	163425											
ACTN2	88	broad.mit.edu	37	chr1	236902904	236902904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctaaaggcgtttgacctgGgtcaggaggaggcattgact	15	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236902904	T	T	236902904	1	4	208	0	1	0	0	0	0	0	0	0	205	1247	43	2		2	ACTN2	1	236902904	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	965799	236902904	12347717	84	163426											
RYR2	6262	broad.mit.edu	37	chr1	237604627	237604627	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctccccttaggaaaaattGgatgtaggggtgagaaaaga	12	6	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237604627	A	A	237604627	2	1	208	1	0	0	0	0	0	0	0	1	13880	1339	47	4		4	RYR2	1	237604627	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	701723	237604627	11645994	85	163427											
RYR2	6262	broad.mit.edu	37	chr1	237664018	237664018	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccccccaataggttgtatTgctcgtactgtaagctcacc	7	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237664018	G	G	237664018	3	3	208	1	0	0	0	0	1	0	0	0	13880	1800	63	5	2293	5	RYR2	1	237664018	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	59391	237664018	11586603	86	163428											
RYR2	6262	broad.mit.edu	37	chr1	237865243	237865243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaatgtataaataagtggGtttttctttcaagtgagatt	9	3	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237865243	T	T	237865243	1	4	208	0	1	0	0	0	0	0	0	0	13880	1276	44	3		3	RYR2	1	237865243	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	201225	237865243	11385378	87	163429											
RYR2	6262	broad.mit.edu	37	chr1	237870570	237870570	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgaagaggctagcagGtaagaactggaagaagacat	14	5	0	5			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237870570	T	T	237870570	5	4	208	1	0	0	0	0	0	0	1	0	13880	1275	44	3	10172	3	RYR2	1	237870570	Splice_Site	SNP	G	TCGA-73-4670-01A-01D-1265-08	5327	237870570	11380051	88	163430											
TRIM58	25893	broad.mit.edu	37	chr1	248039120	248039120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaaaagtgaggaactgtGggactattcttttcagtggt	13	4	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248039120	T	T	248039120	1	4	208	0	1	0	0	0	0	0	0	0	16656	1363	47	2		2	TRIM58	1	248039120	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	10168550	248039120	1211501	89	163431											
OR2AK2	391191	broad.mit.edu	37	chr1	248129593	248129593	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagtgaggagactgttGggatattggatatgctgtag	18	3	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248129593	A	A	248129593	2	1	208	1	0	0	0	0	0	0	0	1	11080	1339	47	4		4	OR2AK2	1	248129593	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	90473	248129593	1121028	90	163432											
OR2M3	127062	broad.mit.edu	37	chr1	248367177	248367177	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctgatcgctccccaacaCaggacaagatggtgtctgta	9	12	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248367177	A	A	248367177	3	1	208	1	0	0	0	0	1	0	0	0	11105	479	17	3	810	3	OR2M3	1	248367177	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	237584	248367177	883444	91	163433											
SNTG2	54221	broad.mit.edu	37	chr2	1271111	1271111	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaccttccagcgctgcacgTttccaatccatgctctgttt	7	14	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1271111	C	C	1271111	1	2	208	0	1	0	0	0	0	0	0	0	14989	1740	60	5		5	SNTG2	2	1271111	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08		1271111	241928262	92	163434											
TRIB2	28951	broad.mit.edu	37	chr2	12880878	12880878	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctgaccagctggtgccGgacgtcaacatggaagagaa	14	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12880878	A	A	12880878	2	1	208	1	0	0	0	0	0	0	0	1	16607	1103	39	4		4	TRIB2	2	12880878	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	11609767	12880878	230318495	93	163435											
NBAS	51594	broad.mit.edu	37	chr2	15492218	15492218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagaatctaaaacaagaaTaggctatattgtaaaggagt	8	3	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15492218	C	C	15492218	1	2	208	0	1	0	0	0	0	0	0	0	10280	1421	49	5		5	NBAS	2	15492218	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2611340	15492218	227707155	94	163436											
PUM2	23369	broad.mit.edu	37	chr2	20482678	20482678	+	Intron	DEL	A	-	-													atatacctcttccacttagcAgagtacactcatcgtaaaaa							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	20482678	-	-	20482678	6	5	208	0	1	1	0	1	0	0	0	0	12934	203	7	0		0	PUM2	2	20482678	Intron	DEL	A	TCGA-73-4670-01A-01D-1265-08	4990460	20482678	222716695	95	163437											
APOB	338	broad.mit.edu	37	chr2	21232872	21232872	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactctaacatcaatagcctCaatgtgttgttttaactttc	4	10	3	0	rs139857448		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21232872	A	A	21232872	4	1	208	1	0	0	0	0	0	1	0	0	787	835	29	3	6839	3	APOB	2	21232872	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	750194	21232872	221966501	96	163438											
HADHA	3030	broad.mit.edu	37	chr2	26417910	26417910	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcctggaggtaaaaggagTcttattagaacttttcaaaa	9	5	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26417910	C	C	26417910	1	2	208	0	1	0	0	0	0	0	0	0	7009	1682	58	5		5	HADHA	2	26417910	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	5185038	26417910	216781463	97	163439											
OTOF	9381	broad.mit.edu	37	chr2	26705389	26705389	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgcgtttgcagagtgggggGaagaggtctgtaaagacgac	17	5	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26705389	A	A	26705389	2	1	208	1	0	0	0	0	0	0	0	1	11397	1165	41	4		4	OTOF	2	26705389	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	287479	26705389	216493984	98	163440											
KCNK3	3777	broad.mit.edu	37	chr2	26950453	26950453	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggtgggggaggtggcggGgcaacggggagggagaagaa	24	4	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26950453	T	T	26950453	1	4	208	0	1	0	0	0	0	0	0	0	8137	1247	43	2		2	KCNK3	2	26950453	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	245064	26950453	216248920	99	163441											
TCF23	150921	broad.mit.edu	37	chr2	27375604	27375604	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctggaggcctggggtactccGatcttgactccaccacagcc	11	15	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27375604	C	C	27375604	3	2	208	1	0	0	0	0	1	0	0	0	15814	1058	37	4	524	4	TCF23	2	27375604	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	425151	27375604	215823769	100	163442											
GALNT14	79623	broad.mit.edu	37	chr2	31181310	31181310	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatttcccggatcagatgcGtaggggtgcggtttaataca	13	7	1	2	rs142569800	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31181310	T	T	31181310	3	4	208	1	0	0	0	0	1	0	0	0	6274	1145	40	3	1287	3	GALNT14	2	31181310	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3805706	31181310	212018063	101	163443											
SLC30A6	55676	broad.mit.edu	37	chr2	32417450	32417450	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatttgcctccacagtcttGgcacagttgggagctctctt	10	11	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32417450	A	A	32417450	2	1	208	1	0	0	0	0	0	0	0	1	14673	1339	47	4		4	SLC30A6	2	32417450	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	1236140	32417450	210781923	102	163444											
DHX57	90957	broad.mit.edu	37	chr2	39088702	39088702	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcttggatttgcggaatcTacttgtcagatactccagtt	10	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39088702	A	A	39088702	4	1	208	1	0	0	0	0	0	1	0	0	4553	1530	53	5	3390	5	DHX57	2	39088702	Nonsense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	6671252	39088702	204110671	103	163445											
PREPL	9581	broad.mit.edu	37	chr2	44565504	44565504	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatacctttagagaccgaaCtgaatcatcagccagaccaa	6	12	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44565504	A	A	44565504	3	1	208	1	0	0	0	0	1	0	0	0	12581	565	20	3	1074	3	PREPL	2	44565504	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	5476802	44565504	198633869	104	163446											
RHOQ	23433	broad.mit.edu	37	chr2	46808292	46808292	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaaatgctacagctatacCcagaccttttataggtaatg	7	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46808292	T	T	46808292	1	4	208	0	1	0	0	0	0	0	0	0	13451	638	22	4		4	RHOQ	2	46808292	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	2242788	46808292	196391081	105	163447											
TMEM17	200728	broad.mit.edu	37	chr2	62729958	62729958	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaacagaaaaggaacaaatGatgaatcttgggtttatgcc	11	5	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62729958	T	T	62729958	1	4	208	0	1	0	0	0	0	0	0	0	16208	1305	45	3		3	TMEM17	2	62729958	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	15921666	62729958	180469415	106	163448											
C2orf86	51057	broad.mit.edu	37	chr2	63631476	63631476	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgggtggcagcttattaatGaaggcaaaagttcagtctgt	12	5	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63631476	A	A	63631476	3	1	208	1	0	0	0	0	1	0	0	0	2223	1294	45	4	1134	4	C2orf86	2	63631476	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	901518	63631476	179567897	107	163449											
C2orf86	51057	broad.mit.edu	37	chr2	63667040	63667040	+	Intron	DEL	G	-	-													gtgggggagagagggaggaaGacatgctgtgatttagaatc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63667040	-	-	63667040	6	5	208	0	1	1	0	1	0	0	0	0	2223	957	33	0		0	C2orf86	2	63667040	Intron	DEL	G	TCGA-73-4670-01A-01D-1265-08	35564	63667040	179532333	108	163450											
WDR92	116143	broad.mit.edu	37	chr2	68371994	68371994	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatacatttatttacactTctgaaattttctctccattc	1	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68371994	A	A	68371994	1	1	208	0	1	0	0	0	0	0	0	0	17466	1798	62	5		5	WDR92	2	68371994	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	4704954	68371994	174827379	109	163451											
AAK1	22848	broad.mit.edu	37	chr2	69784102	69784102	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaccagaaatacaatagCaaatccacctgtgagagaaa	6	11	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69784102	A	A	69784102	3	1	208	1	0	0	0	0	1	0	0	0	16	710	25	3	2793	3	AAK1	2	69784102	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1412108	69784102	173415271	110	163452											
REG1B	5968	broad.mit.edu	37	chr2	79314758	79314758	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcttagcggcagtgaatctCttgcttaaggagcaaatcag	11	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79314758	G	G	79314758	1	3	208	0	1	0	0	0	0	0	0	0	13319	928	32	4		4	REG1B	2	79314758	5'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	9530656	79314758	163884615	111	163453											
CTNNA2	1496	broad.mit.edu	37	chr2	80835155	80835155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattctaaactacagtctgtGgcctttctaaaatgcactgt	6	10	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80835155	T	T	80835155	1	4	208	0	1	0	0	0	0	0	0	0	4047	1363	47	2		2	CTNNA2	2	80835155	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1520397	80835155	162364218	112	163454											
SUCLG1	8802	broad.mit.edu	37	chr2	84668395	84668395	+	Frame_Shift_Del	DEL	C	-	-													atgactccagggcagttgggCccaattagccttgtcttttc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	84668395	-	-	84668395	7	5	208	1	0	1	0	1	0	0	0	0	15482	726	26	0	557	0	SUCLG1	2	84668395	Frame_Shift_Del	DEL	C	TCGA-73-4670-01A-01D-1265-08	3833240	84668395	158530978	113	163455											
DNAH6	1768	broad.mit.edu	37	chr2	85004577	85004577	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaaattaggtgcaaccGcctaagattcttcattatac	9	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85004577	A	A	85004577	1	1	208	0	1	0	0	0	0	0	0	0	4645	1102	38	4		4	DNAH6	2	85004577	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	336182	85004577	158194796	114	163456											
SFTPB	6439	broad.mit.edu	37	chr2	85894218	85894218	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccttcatccaggatctgGgcatcattacctggaaaatg	8	11	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85894218	A	A	85894218	1	1	208	0	1	0	0	0	0	0	0	0	14304	1247	43	4		4	SFTPB	2	85894218	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	889641	85894218	157305155	115	163457											
RMND5A	64795	broad.mit.edu	37	chr2	87345620	87345620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtcctgaccatatcacaCtatcaccgcgggaggaaggg	11	11	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87345620	A	A	87345620	1	1	208	0	1	0	0	0	0	0	0	0	13508	580	20	3		3	RMND5A	2	87345620	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1451402	87345620	155853753	116	163458											
ASTL	431705	broad.mit.edu	37	chr2	96799187	96799187	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacatggggatgatggaaatGaagtctctctggtcctgata	12	6	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96799187	A	A	96799187	2	1	208	1	0	0	0	0	0	0	0	1	1067	1281	45	4		4	ASTL	2	96799187	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	9453567	96799187	146400186	117	163459											
SEMA4C	54910	broad.mit.edu	37	chr2	97527635	97527635	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcaaagagcagcttctgCgagaaaagcggggcgcagga	16	10	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97527635	A	A	97527635	1	1	208	0	1	0	0	0	0	0	0	0	14146	783	27	3		3	SEMA4C	2	97527635	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	728448	97527635	145671738	118	163460											
ANKRD36	375248	broad.mit.edu	37	chr2	97866197	97866197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattccattcaggccacaaGtgatgagaaggattcttttt	8	7	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97866197	T	T	97866197	3	4	208	1	0	0	0	0	1	0	0	0	665	1029	36	3	2974	3	ANKRD36	2	97866197	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	338562	97866197	145333176	119	163461											
LYG2	254773	broad.mit.edu	37	chr2	99861640	99861640	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtattttggggcttggaAgcactgcaaatggatttcta	13	5	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99861640	C	C	99861640	1	2	208	0	1	0	0	0	0	0	0	0	9193	87	3	5		5	LYG2	2	99861640	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1995443	99861640	143337733	120	163462											
REV1	51455	broad.mit.edu	37	chr2	100019322	100019322	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattatccaggtatattaagAtctcataaaggtcaaagtta	6	6	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100019322	T	T	100019322	1	4	208	0	1	0	0	0	0	0	0	0	13347	348	12	5		5	REV1	2	100019322	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	157682	100019322	143180051	121	163463											
AFF3	3899	broad.mit.edu	37	chr2	100627997	100627997	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgactgaaattccacaacTagagagtcattcctctggtt	8	9	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100627997	C	C	100627997	1	2	208	0	1	0	0	0	0	0	0	0	358	1509	53	5		5	AFF3	2	100627997	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	608675	100627997	142571376	122	163464											
PDCL3	79031	broad.mit.edu	37	chr2	101182955	101182955	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggtaaccttggtcccGctcttctaggaccccaacgc	8	16	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101182955	T	T	101182955	1	4	208	0	1	0	0	0	0	0	0	0	11722	1102	38	3		3	PDCL3	2	101182955	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	554958	101182955	142016418	123	163465											
IL1R1	3554	broad.mit.edu	37	chr2	102789251	102789251	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatttacctgttttgccaAgaatacacatggtatagatg	7	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102789251	G	G	102789251	3	3	208	1	0	0	0	0	1	0	0	0	7728	72	3	5	970	5	IL1R1	2	102789251	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	1606296	102789251	140410122	124	163466											
SLC5A7	60482	broad.mit.edu	37	chr2	108618620	108618620	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atggccatttctgaattgagGactctctatcgggagggtgg	14	7	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108618620	T	T	108618620	1	4	208	0	1	0	0	0	0	0	0	0	14784	1189	41	3		3	SLC5A7	2	108618620	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	5829369	108618620	134580753	125	163467											
SULT1C4	27233	broad.mit.edu	37	chr2	108998756	108998756	+	Intron	DEL	T	-	-													cttatagatgctttgaattgTagtagtaataatggaagcag							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108998756	-	-	108998756	6	5	208	0	1	1	0	1	0	0	0	0	15497	1653	57	0		0	SULT1C4	2	108998756	Intron	DEL	T	TCGA-73-4670-01A-01D-1265-08	380136	108998756	134200617	126	163468											
RANBP2	5903	broad.mit.edu	37	chr2	109351905	109351906	+	Intron	DNP	GG	TT	TT													atcataaaactagacatagtGgaatggtgctctttgggagc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	109351906	TT	TT	109351905	1	4	208	0	1	0	0	0	0	0	0	0	13136	1363	47	2		2	RANBP2	2	109351905	Intron	DNP	GG	TCGA-73-4670-01A-01D-1265-08	353149	109351905	133847468	127	163469											
EDAR	10913	broad.mit.edu	37	chr2	109546711	109546711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagacacctgccaacaaagGggggtgttgtggcctccgta	14	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109546711	T	T	109546711	1	4	208	0	1	0	0	0	0	0	0	0	4945	1247	43	2		2	EDAR	2	109546711	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	194806	109546711	133652662	128	163470											
MALL	7851	broad.mit.edu	37	chr2	110849155	110849155	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacccagaacgtccacccagGaagagccatgctgctggttc	10	14	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110849155	T	T	110849155	1	4	208	0	1	0	0	0	0	0	0	0	9293	1189	41	3		3	MALL	2	110849155	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1302444	110849155	132350218	129	163471											
ACOXL	55289	broad.mit.edu	37	chr2	111542184	111542184	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaattgtttcttaatttAaaaactgcttttactgtgtt	6	4	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111542184	G	G	111542184	1	3	208	0	1	0	0	0	0	0	0	0	161	377	13	5		5	ACOXL	2	111542184	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	693029	111542184	131657189	130	163472											
DPP10	57628	broad.mit.edu	37	chr2	116572641	116572641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatataatattactaaccCtgactcaaggcttctatttt	4	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116572641	A	A	116572641	1	1	208	0	1	0	0	0	0	0	0	0	4767	696	24	2		2	DPP10	2	116572641	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	5030457	116572641	126626732	131	163473											
DPP10	57628	broad.mit.edu	37	chr2	116599678	116599678	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaattaggtttgattttgGtcagatattattactcaaag	8	3	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116599678	T	T	116599678	1	4	208	0	1	0	0	0	0	0	0	0	4767	1276	44	3		3	DPP10	2	116599678	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	27037	116599678	126599695	132	163474											
ERCC3	2071	broad.mit.edu	37	chr2	128045982	128045982	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacacatctgcttaccatcTgtctcttccccagaagagtg	7	13	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128045982	C	C	128045982	1	2	208	0	1	0	0	0	0	0	0	0	5256	1595	55	5		5	ERCC3	2	128045982	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	11446304	128045982	115153391	133	163475											
MYO7B	4648	broad.mit.edu	37	chr2	128327344	128327344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgttttgtggcatcatgtcCctgcacaccctttttgcagc	8	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128327344	A	A	128327344	1	1	208	0	1	0	0	0	0	0	0	0	10177	638	22	2		2	MYO7B	2	128327344	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	281362	128327344	114872029	134	163476											
LRP1B	53353	broad.mit.edu	37	chr2	141253064	141253064	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggaggagtgaattcaataaGaacggctataaaattcagga	11	4	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141253064	T	T	141253064	1	4	208	0	1	0	0	0	0	0	0	0	9042	957	33	3		3	LRP1B	2	141253064	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	12925720	141253064	101946309	135	163477											
RND3	390	broad.mit.edu	37	chr2	151326622	151326622	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgatttgttccgcttaAcgtttttatttgtcttattt	6	6	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151326622	C	C	151326622	3	2	208	1	0	0	0	0	1	0	0	0	13532	43	2	5	124	5	RND3	2	151326622	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	10073558	151326622	91872751	136	163478											
SLC38A11	151258	broad.mit.edu	37	chr2	165796039	165796039	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtccaataatgaagtggCgaccaataaacacgttttca	7	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165796039	T	T	165796039	3	4	208	1	0	0	0	0	1	0	0	0	14717	768	27	4	958	4	SLC38A11	2	165796039	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	14469417	165796039	77403334	137	163479											
XIRP2	129446	broad.mit.edu	37	chr2	168098402	168098402	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgacaaagagatgacaacCccagccaagcagattaaggt	9	10	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168098402	A	A	168098402	2	1	208	1	0	0	0	0	0	0	0	1	17557	610	22	2		2	XIRP2	2	168098402	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	2302363	168098402	75100971	138	163480											
LASS6	253782	broad.mit.edu	37	chr2	169547628	169547628	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attgtctgggtttttacacaCattaagtatctaccttcggt	7	8	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169547628	G	G	169547628	1	3	208	0	1	0	0	0	0	0	0	0	8715	493	17	4		4	LASS6	2	169547628	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1449226	169547628	73651745	139	163481											
LRP2	4036	broad.mit.edu	37	chr2	169999058	169999058	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcatacctcccacatccCttaaccctccttccagccat	2	19	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169999058	T	T	169999058	1	4	208	0	1	0	0	0	0	0	0	0	9043	696	24	4		4	LRP2	2	169999058	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	451430	169999058	73200315	140	163482											
TTN	7273	broad.mit.edu	37	chr2	179477787	179477787	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagttggttttccagggGgccatggaggatctgcaagc	14	8	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179477787	T	T	179477787	3	4	208	1	0	0	0	0	1	0	0	0	16861	1232	43	2	58424	2	TTN	2	179477787	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	9478729	179477787	63721586	141	163483											
TTN	7273	broad.mit.edu	37	chr2	179584914	179584914	+	Frame_Shift_Del	DEL	C	-	-													agaaattggctggaagccctCcactatggcccgtaactcaa							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179584914	-	-	179584914	7	5	208	1	0	1	0	1	0	0	0	0	16861	864	30	0	81202	0	TTN	2	179584914	Frame_Shift_Del	DEL	C	TCGA-73-4670-01A-01D-1265-08	107127	179584914	63614459	142	163484											
ZNF804A	91752	broad.mit.edu	37	chr2	185802439	185802439	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagattctatcgaaaacgTagacaacattcacattctta	5	8	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185802439	C	C	185802439	2	2	208	1	0	0	0	0	0	0	0	1	18299	1625	57	5		5	ZNF804A	2	185802439	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	6217525	185802439	57396934	143	163485											
ANKRD44	91526	broad.mit.edu	37	chr2	197873878	197873878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctggagtgcagtggggCgatgtcatctcattgcaatc	14	9	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197873878	A	A	197873878	1	1	208	0	1	0	0	0	0	0	0	0	672	783	27	3		3	ANKRD44	2	197873878	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	12071439	197873878	45325495	144	163486											
SATB2	23314	broad.mit.edu	37	chr2	200246416	200246416	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatgttcagaaacacccaCctttgtaattggattttcaa	6	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200246416	A	A	200246416	5	1	208	1	0	0	0	0	0	0	1	0	13966	521	18	3	1759	3	SATB2	2	200246416	Splice_Site	SNP	C	TCGA-73-4670-01A-01D-1265-08	2372538	200246416	42952957	145	163487											
CDK15	65061	broad.mit.edu	37	chr2	202671362	202671362	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggaaaggttcaagtgcgGgttttctccttgaacctaca	13	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202671362	C	C	202671362	1	2	208	0	1	0	0	0	0	0	0	0	3161	1247	43	4		4	CDK15	2	202671362	5'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	2424946	202671362	40528011	146	163488											
ALS2CR8	79800	broad.mit.edu	37	chr2	203836194	203836194	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaataattttaatgtttaAattttagtaattttaaatat	2	0	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203836194	C	C	203836194	1	2	208	0	1	0	0	0	0	0	0	0	555	29	1	5		5	ALS2CR8	2	203836194	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1164832	203836194	39363179	147	163489											
ABI2	10152	broad.mit.edu	37	chr2	204259426	204259426	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctcttctttttgtaggcgGcactccccctatcgcacact	7	16	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	204259426	A	A	204259426	2	1	208	1	0	0	0	0	0	0	0	1	89	1190	42	4		4	ABI2	2	204259426	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	423232	204259426	38939947	148	163490											
CPS1	1373	broad.mit.edu	37	chr2	211539733	211539733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcagcatggaatctgtcCacaaatcaaaatattgcaga	7	9	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211539733	A	A	211539733	1	1	208	0	1	0	0	0	0	0	0	0	3855	609	21	2		2	CPS1	2	211539733	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	7280307	211539733	31659640	149	163491											
CPS1	1373	broad.mit.edu	37	chr2	211541795	211541795	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaacaacactaaatttgtcCatgataattatgtgattcgg	6	7	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211541795	G	G	211541795	3	3	208	1	0	0	0	0	1	0	0	0	3855	594	21	4	4507	4	CPS1	2	211541795	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	2062	211541795	31657578	150	163492											
ERBB4	2066	broad.mit.edu	37	chr2	212285357	212285357	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctaaaagaaagattgcccatCagacacaaatatgattcttt	5	8	2	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212285357	A	A	212285357	1	1	208	0	1	0	0	0	0	0	0	0	5251	841	29	3		3	ERBB4	2	212285357	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	743562	212285357	30914016	151	163493											
SPAG16	79582	broad.mit.edu	37	chr2	214878632	214878632	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattagcattgtatagacagCatagatactaactcctaaaa	5	7	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214878632	A	A	214878632	1	1	208	0	1	0	0	0	0	0	0	0	15094	725	25	3		3	SPAG16	2	214878632	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2593275	214878632	28320741	152	163494											
ABCA12	26154	broad.mit.edu	37	chr2	215812271	215812271	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagtctcctaaggagttTatgaacagtctgtaggcaat	11	6	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215812271	C	C	215812271	3	2	208	1	0	0	0	0	1	0	0	0	30	1763	61	5	697	5	ABCA12	2	215812271	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	933639	215812271	27387102	153	163495											
ABCA12	26154	broad.mit.edu	37	chr2	215846873	215846873	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgccagagggcagaagtatGactgttgggtggagaagttc	16	5	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215846873	C	C	215846873	1	2	208	0	1	0	0	0	0	0	0	0	30	1305	45	4		4	ABCA12	2	215846873	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	34602	215846873	27352500	154	163496											
SERPINE2	5270	broad.mit.edu	37	chr2	224866331	224866331	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagactctcaggcaaaggctCcgccagtgagcaattgtgca	11	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224866331	A	A	224866331	1	1	208	0	1	0	0	0	0	0	0	0	14225	870	30	3		3	SERPINE2	2	224866331	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	9019458	224866331	18333042	155	163497											
ITM2C	81618	broad.mit.edu	37	chr2	231738039	231738039	+	Intron	DEL	G	-	-													tttcccccaagactccctccGggcccagccagcaggtgaag							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	231738039	-	-	231738039	6	5	208	0	1	1	0	1	0	0	0	0	7984	1131	39	0		0	ITM2C	2	231738039	Intron	DEL	G	TCGA-73-4670-01A-01D-1265-08	6871708	231738039	11461334	156	163498											
HTR2B	3357	broad.mit.edu	37	chr2	231973147	231973147	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgatatatgacataaaatTctttatataatatattcttg	3	3	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231973147	C	C	231973147	1	2	208	0	1	0	0	0	0	0	0	0	7512	1798	62	5		5	HTR2B	2	231973147	3'UTR	SNP	T	TCGA-73-4670-01A-01D-1265-08	235108	231973147	11226226	157	163499											
DIS3L2	129563	broad.mit.edu	37	chr2	233199125	233199125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgataccctgcagaaacaGgcggaccactgtaacgaccg	10	15	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233199125	T	T	233199125	3	4	208	1	0	0	0	0	1	0	0	0	4577	991	35	2	2271	2	DIS3L2	2	233199125	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1225978	233199125	10000248	158	163500											
RAMP1	10267	broad.mit.edu	37	chr2	238820227	238820227	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcggagaagctgggctgcttCtggcccaatgcagaggtgga	17	9	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238820227	T	T	238820227	2	4	208	1	0	0	0	0	0	0	0	1	13129	912	32	4		4	RAMP1	2	238820227	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	5621102	238820227	4379146	159	163501											
AQP12A	375318	broad.mit.edu	37	chr2	241631418	241631419	+	Missense_Mutation	DNP	CC	AA	AA													gggcctccaaggccctgctcCcagtgggcgcctatgaagtc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	241631419	AA	AA	241631418	3	1	208	1	0	0	0	0	1	0	0	0	826	623	22	2	90	2	AQP12A	2	241631418	Missense_Mutation	DNP	CC	TCGA-73-4670-01A-01D-1265-08	2811191	241631418	1567955	160	163502											
FARP2	9855	broad.mit.edu	37	chr2	242433486	242433487	+	Frame_Shift_Ins	INS	-	G	G													ccccaagcatcgtgcaggatINSggcccccaaccctcctcagg							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242433487	G	G	242433486	7	5	208	1	0	1	1	0	0	0	0	0	5734	1461	51	0	3213	0	FARP2	2	242433486	Frame_Shift_Ins	INS	-	TCGA-73-4670-01A-01D-1265-08	802068	242433486	765887	161	163503											
CNTN4	152330	broad.mit.edu	37	chr3	3076339	3076339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggtcccccagaggctGtgacaatagacgaaatcaca	9	13	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3076339	A	A	3076339	3	1	208	1	0	0	0	0	1	0	0	0	3675	1377	48	4	1861	4	CNTN4	3	3076339	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08		3076339	194946091	162	163504											
WNT7A	7476	broad.mit.edu	37	chr3	13896333	13896333	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagaggagacaagttggGgtcaggtcccaagcatctga	15	7	2	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13896333	T	T	13896333	1	4	208	0	1	0	0	0	0	0	0	0	17521	1247	43	2		2	WNT7A	3	13896333	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	10819994	13896333	184126097	163	163505											
FGD5	152273	broad.mit.edu	37	chr3	14940269	14940269	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgtacaaggaggcagccaGactgcgaagcatcggctgct	14	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14940269	C	C	14940269	3	2	208	1	0	0	0	0	1	0	0	0	5893	933	33	4	3116	4	FGD5	3	14940269	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1043936	14940269	183082161	164	163506											
KAT2B	8850	broad.mit.edu	37	chr3	20189657	20189657	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaatttcaggtttttgtaaGaatgagctgaatagtaatca	8	5	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20189657	A	A	20189657	1	1	208	0	1	0	0	0	0	0	0	0	8052	957	33	4		4	KAT2B	3	20189657	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	5249388	20189657	177832773	165	163507											
NEK10	152110	broad.mit.edu	37	chr3	27352561	27352561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagattaaagggggagtaCttccaggagcacagatctgc	13	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27352561	A	A	27352561	1	1	208	0	1	0	0	0	0	0	0	0	10417	580	20	3		3	NEK10	3	27352561	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	7162904	27352561	170669869	166	163508											
DYNC1LI1	51143	broad.mit.edu	37	chr3	32586469	32586469	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaagaatccaaagcagtcCaaggctttgacatgtcaaca	8	9	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32586469	A	A	32586469	3	1	208	1	0	0	0	0	1	0	0	0	4884	595	21	2	1144	2	DYNC1LI1	3	32586469	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	5233908	32586469	165435961	167	163509											
CNOT10	25904	broad.mit.edu	37	chr3	32794838	32794838	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtatgactggtatcaaacAgaatcgcaagtagtcattac	9	7	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32794838	T	T	32794838	1	4	208	0	1	0	0	0	0	0	0	0	3650	203	7	5		5	CNOT10	3	32794838	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	208369	32794838	165227592	168	163510											
PDCD6IP	10015	broad.mit.edu	37	chr3	33863558	33863558	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaaggattgaaaatcgCtgctaaacattaccaggtat	9	6	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33863558	T	T	33863558	3	4	208	1	0	0	0	0	1	0	0	0	11718	797	28	4	460	4	PDCD6IP	3	33863558	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1068720	33863558	164158872	169	163511											
ARPP21	10777	broad.mit.edu	37	chr3	35763343	35763343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtagttagtactgaatGtgtttatgtcctgtggtatt	12	4	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35763343	T	T	35763343	1	4	208	0	1	0	0	0	0	0	0	0	982	1392	48	3		3	ARPP21	3	35763343	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1899785	35763343	162259087	170	163512											
GOLGA4	2803	broad.mit.edu	37	chr3	37369784	37369784	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctcacactctctctctctCtctctctcaaaaatgttttc	1	16	6	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37369784	G	G	37369784	1	3	208	0	1	0	0	0	0	0	0	0	6619	928	32	4		4	GOLGA4	3	37369784	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1606441	37369784	160652646	171	163513											
SCN11A	11280	broad.mit.edu	37	chr3	38912393	38912393	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aataaaagaacagtagaaggGaactcaagggtgtgtgtctt	12	4	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38912393	T	T	38912393	1	4	208	0	1	0	0	0	0	0	0	0	14026	1189	41	3		3	SCN11A	3	38912393	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1542609	38912393	159110037	172	163514											
MYL3	4634	broad.mit.edu	37	chr3	46902372	46902372	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcagcctaccccactccCcacacccctggcaggaccct	8	21	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46902372	A	A	46902372	1	1	208	0	1	0	0	0	0	0	0	0	10142	638	22	2		2	MYL3	3	46902372	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	7989979	46902372	151120058	173	163515											
KIF9	64147	broad.mit.edu	37	chr3	47289107	47289107	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggctccttcccttcatcaTcgggtcctgccagagggcct	10	16	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47289107	G	G	47289107	1	3	208	0	1	0	0	0	0	0	0	0	8380	1450	50	5		5	KIF9	3	47289107	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	386735	47289107	150733323	174	163516											
COL7A1	1294	broad.mit.edu	37	chr3	48612517	48612517	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggggccagggggtccggGgggcccaggggttccaggga	22	10	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48612517	C	C	48612517	3	2	208	1	0	0	0	0	1	0	0	0	3736	1232	43	4	2751	4	COL7A1	3	48612517	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1323410	48612517	149409913	175	163517											
GRM2	2912	broad.mit.edu	37	chr3	51752135	51752135	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcatcgctttgaagacccCatactcccgccctgacacag	7	17	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51752135	A	A	51752135	1	1	208	0	1	0	0	0	0	0	0	0	6863	609	21	2		2	GRM2	3	51752135	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	3139618	51752135	146270295	176	163518											
BAP1	8314	broad.mit.edu	37	chr3	52439224	52439224	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccccattgaggctgctgcCtggaggcttcaccactagct	10	14	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52439224	T	T	52439224	3	4	208	1	0	0	0	0	1	0	0	0	1316	681	24	4	1199	4	BAP1	3	52439224	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	687089	52439224	145583206	177	163519											
BAP1	8314	broad.mit.edu	37	chr3	52442492	52442492	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagagtccagcagacctGgtgggcaaagaacatgttat	12	9	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52442492	A	A	52442492	4	1	208	1	0	0	0	0	0	1	0	0	1316	1357	47	4	1992	4	BAP1	3	52442492	Nonsense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3268	52442492	145579938	178	163520											
STAB1	23166	broad.mit.edu	37	chr3	52543153	52543153	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagagccagcccatgaaagGagggggtgttgggagagggg	20	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52543153	T	T	52543153	1	4	208	0	1	0	0	0	0	0	0	0	15355	1189	41	3		3	STAB1	3	52543153	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	100661	52543153	145479277	179	163521											
IL17RD	54756	broad.mit.edu	37	chr3	57138358	57138358	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattaatagggctttcttgTgttatgcatacctcaattat	7	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57138358	C	C	57138358	1	2	208	0	1	0	0	0	0	0	0	0	7712	1711	59	5		5	IL17RD	3	57138358	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	4595205	57138358	140884072	180	163522											
C3orf67	200844	broad.mit.edu	37	chr3	58855019	58855019	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatttctcactattttcaCtagctatcaatctttatgca	2	10	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58855019	A	A	58855019	1	1	208	0	1	0	0	0	0	0	0	0	2263	580	20	3		3	C3orf67	3	58855019	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1716661	58855019	139167411	181	163523											
LRIG1	26018	broad.mit.edu	37	chr3	66550812	66550812	+	Frame_Shift_Del	DEL	C	-	-													ggcgcggggccccgagccctCcccggaccggccgcgccatc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66550812	-	-	66550812	7	5	208	1	0	1	0	1	0	0	0	0	9031	855	30	0	3337	0	LRIG1	3	66550812	Frame_Shift_Del	DEL	C	TCGA-73-4670-01A-01D-1265-08	7695793	66550812	131471618	182	163524											
FOXP1	27086	broad.mit.edu	37	chr3	71090529	71090529	+	Frame_Shift_Del	DEL	T	-	-													tgtccattggtagaggcatgTgggttcattattaaggaggt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	71090529	-	-	71090529	7	5	208	1	0	1	0	1	0	0	0	0	6086	1683	59	0	1258	0	FOXP1	3	71090529	Frame_Shift_Del	DEL	T	TCGA-73-4670-01A-01D-1265-08	4539717	71090529	126931901	183	163525											
OR5K1	26339	broad.mit.edu	37	chr3	98188519	98188519	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttgtggtgttctttgcCatctatctgatcaccgtggt	10	9	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98188519	A	A	98188519	2	1	208	1	0	0	0	0	0	0	0	1	11260	581	21	2		2	OR5K1	3	98188519	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	27097990	98188519	99833911	184	163526											
PHLDB2	90102	broad.mit.edu	37	chr3	111632707	111632707	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcgaggtgcagcaaattaGggtgtttactgtaaagtaac	13	5	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111632707	A	A	111632707	1	1	208	0	1	0	0	0	0	0	0	0	11947	1015	35	4		4	PHLDB2	3	111632707	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	13444188	111632707	86389723	185	163527											
IGSF11	152404	broad.mit.edu	37	chr3	118647443	118647443	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtaggtgccagtgtctgAtaactgagtgttattaatga	12	5	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118647443	T	T	118647443	3	4	208	1	0	0	0	0	1	0	0	0	7668	333	12	5	978	5	IGSF11	3	118647443	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	7014736	118647443	79374987	186	163528											
KPNA1	3836	broad.mit.edu	37	chr3	122170440	122170440	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attagacaaagcccatactgCattccgggtcatggtcaggc	10	11	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122170440	T	T	122170440	3	4	208	1	0	0	0	0	1	0	0	0	8500	710	25	4	950	4	KPNA1	3	122170440	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	3522997	122170440	75851990	187	163529											
MYLK	4638	broad.mit.edu	37	chr3	123451990	123451991	+	Intron	DEL	GA	-	-													cgtgagctccctatgccctgGagagcaccctgtgattgtga							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123451991	-	-	123451990	6	5	208	0	1	1	0	1	0	0	0	0	10150	1189	41	0		0	MYLK	3	123451990	Intron	DEL	GA	TCGA-73-4670-01A-01D-1265-08	1281550	123451990	74570440	188	163530											
DNAJC13	23317	broad.mit.edu	37	chr3	132242073	132242073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttttattttacatcttatTttctgttgatttagttgttt	4	4	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132242073	C	C	132242073	1	2	208	0	1	0	0	0	0	0	0	0	4672	1856	64	5		5	DNAJC13	3	132242073	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	8790083	132242073	65780357	189	163531											
DZIP1L	199221	broad.mit.edu	37	chr3	137807115	137807115	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtctgaaaatatagaaCtttgatgtccttcaacttct	7	7	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137807115	A	A	137807115	1	1	208	0	1	0	0	0	0	0	0	0	4904	580	20	3		3	DZIP1L	3	137807115	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	5565042	137807115	60215315	190	163532											
CPB1	1360	broad.mit.edu	37	chr3	148545953	148545953	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaaaaacatgaaataTtaactatagcattttggtag	7	3	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148545953	A	A	148545953	1	1	208	0	1	0	0	0	0	0	0	0	3828	1508	52	5		5	CPB1	3	148545953	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	10738838	148545953	49476477	191	163533											
RNF13	11342	broad.mit.edu	37	chr3	149678821	149678821	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcagaaaatgaaattaAtgaacatgatgtcgtggtcc	10	5	0	5			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149678821	G	G	149678821	3	3	208	1	0	0	0	0	1	0	0	0	13548	101	4	5	1110	5	RNF13	3	149678821	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	1132868	149678821	48343609	192	163534											
MED12L	116931	broad.mit.edu	37	chr3	151127162	151127162	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactgacaggattttcaaaGctctttattggaggtgggaa	12	5	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151127162	T	T	151127162	1	4	208	0	1	0	0	0	0	0	0	0	9522	986	34	3		3	MED12L	3	151127162	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1448341	151127162	46895268	193	163535											
MME	4311	broad.mit.edu	37	chr3	154860027	154860027	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggttttttttatacagaGatcttcaaaatttaatgtcc	7	5	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154860027	T	T	154860027	3	4	208	1	0	0	0	0	1	0	0	0	9738	956	33	3	1138	3	MME	3	154860027	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3732865	154860027	43162403	194	163536											
SHOX2	6474	broad.mit.edu	37	chr3	157818062	157818062	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttatggagttgattttcTtgttttctacatttagctct	6	7	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157818062	G	G	157818062	3	3	208	1	0	0	0	0	1	0	0	0	14402	1606	56	5	413	5	SHOX2	3	157818062	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	2958035	157818062	40204368	195	163537											
SI	6476	broad.mit.edu	37	chr3	164709072	164709072	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttaaaatttcaaaccctttCtatttcttaacaatgctagc	3	9	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164709072	A	A	164709072	1	1	208	0	1	0	0	0	0	0	0	0	14410	928	32	3		3	SI	3	164709072	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	6891010	164709072	33313358	196	163538											
SI	6476	broad.mit.edu	37	chr3	164777168	164777168	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctttaactccattgaacgTgtattataaacataaccctt	3	9	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164777168	C	C	164777168	1	2	208	0	1	0	0	0	0	0	0	0	14410	1711	59	5		5	SI	3	164777168	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	68096	164777168	33245262	197	163539											
WDR49	151790	broad.mit.edu	37	chr3	167293709	167293710	+	In_Frame_Ins	INS	-	TTCAAGATA	TTCAAGATA													aagaaagcatcattacctgcINSttcaagatagaattgtaaag							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTCAAGATA	167293710	TTCAAGATA	TTCAAGATA	167293709	7	5	208	1	0	1	1	0	0	0	0	0	17429	796	28	0	1658	0	WDR49	3	167293709	In_Frame_Ins	INS	-	TCGA-73-4670-01A-01D-1265-08	2516541	167293709	30728721	198	163540											
GOLIM4	27333	broad.mit.edu	37	chr3	167750588	167750588	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catagagttttgtgtcttctGctcttccaggaactgcttca	8	10	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167750588	T	T	167750588	3	4	208	1	0	0	0	0	1	0	0	0	6630	1319	46	3	1226	3	GOLIM4	3	167750588	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	456879	167750588	30271842	199	163541											
SKIL	6498	broad.mit.edu	37	chr3	170108088	170108088	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttagtcagagacataaacAaagtgggaattggccttgtt	10	6	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170108088	G	G	170108088	3	3	208	1	0	0	0	0	1	0	0	0	14471	131	5	5	1521	5	SKIL	3	170108088	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	2357500	170108088	27914342	200	163542											
ACTL6A	86	broad.mit.edu	37	chr3	179294749	179294749	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgttacaggctttttgcaTgagtattaaaaaaagttata	7	3	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179294749	G	G	179294749	1	3	208	0	1	0	0	0	0	0	0	0	198	1479	51	5		5	ACTL6A	3	179294749	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	9186661	179294749	18727681	201	163543											
ABCC5	10057	broad.mit.edu	37	chr3	183705647	183705647	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagatccacacaacccttcGcagggaagcagcgtctggcc	11	14	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183705647	C	C	183705647	3	2	208	1	0	0	0	0	1	0	0	0	56	1095	38	4	3955	4	ABCC5	3	183705647	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4410898	183705647	14316783	202	163544											
ATP13A5	344905	broad.mit.edu	37	chr3	193025093	193025093	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tattagtgagtggcttgtctGagcaaaagccatttctactc	9	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	193025093	C	C	193025093	1	2	208	0	1	0	0	0	0	0	0	0	1131	1305	45	4		4	ATP13A5	3	193025093	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	9319446	193025093	4997337	203	163545											
GAK	2580	broad.mit.edu	37	chr4	887089	887089	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacatgtgcctccctcccctCtgcgggggatctggggctca	12	16	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	887089	A	A	887089	1	1	208	0	1	0	0	0	0	0	0	0	6257	928	32	3		3	GAK	4	887089	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08		887089	190267187	204	163546											
WHSC1	7468	broad.mit.edu	37	chr4	1957494	1957494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacatcgagatgcctgacGgcagctggttctgcaatgac	12	10	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1957494	T	T	1957494	3	4	208	1	0	0	0	0	1	0	0	0	17489	1116	39	1	2719	1	WHSC1	4	1957494	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1070405	1957494	189196782	205	163547											
NOP14	8602	broad.mit.edu	37	chr4	2956197	2956197	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttcaatcagctctttcCgggacttcggtttctcccgc	8	15	5	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2956197	A	A	2956197	3	1	208	1	0	0	0	0	1	0	0	0	10631	652	23	1	2067	1	NOP14	4	2956197	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	998703	2956197	188198079	206	163548											
PCDH7	5099	broad.mit.edu	37	chr4	30723098	30723098	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctggtgcttgggctgctgCctcctcctgccgctctcgct	13	16	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30723098	A	A	30723098	4	1	208	1	0	0	0	0	0	1	0	0	11610	747	26	3	56	3	PCDH7	4	30723098	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	27766901	30723098	160431178	207	163549											
KLF3	51274	broad.mit.edu	37	chr4	38696289	38696292	+	Intron	DEL	TTGT	-	-													ttgtttgtttttgcccagtgTtgttaatgcttttagtagac							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38696292	-	-	38696289	6	5	208	0	1	1	0	1	0	0	0	0	8418	1740	60	0		0	KLF3	4	38696289	Intron	DEL	TTGT	TCGA-73-4670-01A-01D-1265-08	7973191	38696289	152457987	208	163550											
WDR19	57728	broad.mit.edu	37	chr4	39271647	39271647	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtatgtatgcagaactgaAatcccagaagatcaaaattc	7	8	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39271647	C	C	39271647	3	2	208	1	0	0	0	0	1	0	0	0	17406	14	1	5	3532	5	WDR19	4	39271647	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	575358	39271647	151882629	209	163551											
GRXCR1	389207	broad.mit.edu	37	chr4	43032600	43032600	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcattttattaatcaaaGgcaatactttggtttatata	4	6	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43032600	T	T	43032600	1	4	208	0	1	0	0	0	0	0	0	0	6878	1015	35	2		2	GRXCR1	4	43032600	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	3760953	43032600	148121676	210	163552											
YIPF7	285525	broad.mit.edu	37	chr4	44626656	44626656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcaaccagacaggatgacCatggggagcaggcagtaacc	14	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44626656	A	A	44626656	3	1	208	1	0	0	0	0	1	0	0	0	17610	594	21	2	208	2	YIPF7	4	44626656	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1594056	44626656	146527620	211	163553											
GABRA4	2557	broad.mit.edu	37	chr4	46979658	46979658	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtattcctaggacaatTattttggaacatatttaagt	7	4	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46979658	A	A	46979658	1	1	208	0	1	0	0	0	0	0	0	0	6223	1769	61	5		5	GABRA4	4	46979658	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2353002	46979658	144174618	212	163554											
CNGA1	1259	broad.mit.edu	37	chr4	47939929	47939929	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataactgtcaattaactttGttgaggtcaacagaaaaatt	6	5	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47939929	C	C	47939929	1	2	208	0	1	0	0	0	0	0	0	0	3628	1392	48	4		4	CNGA1	4	47939929	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	960271	47939929	143214347	213	163555											
SCFD2	152579	broad.mit.edu	37	chr4	54232021	54232021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctctcggcgcaggcggCgtccaggtaaaccacagccc	13	16	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54232021	A	A	54232021	3	1	208	1	0	0	0	0	1	0	0	0	14002	768	27	3	2002	3	SCFD2	4	54232021	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	6292092	54232021	136922255	214	163556											
PDGFRA	5156	broad.mit.edu	37	chr4	55141239	55141239	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagatctgagcttgtgcttAgtaagaactaggcaatggaa	12	5	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55141239	T	T	55141239	1	4	208	0	1	0	0	0	0	0	0	0	11755	435	15	5		5	PDGFRA	4	55141239	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	909218	55141239	136013037	215	163557											
KIAA1211	57482	broad.mit.edu	37	chr4	57181921	57181921	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacgaaaaagacccatgctGggacccagcgaagagacagc	11	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57181921	A	A	57181921	2	1	208	1	0	0	0	0	0	0	0	1	8285	1335	47	4		4	KIAA1211	4	57181921	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	2040682	57181921	133972355	216	163558											
AASDH	132949	broad.mit.edu	37	chr4	57215535	57215535	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtaaaagtcaactgccttCattctatgagaatgggaacc	9	8	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57215535	A	A	57215535	3	1	208	1	0	0	0	0	1	0	0	0	22	826	29	3	934	3	AASDH	4	57215535	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	33614	57215535	133938741	217	163559											
EPHA5	2044	broad.mit.edu	37	chr4	66286287	66286287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgactggagatggagctgCaaaatagtttaaataaggag	14	3	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66286287	A	A	66286287	1	1	208	0	1	0	0	0	0	0	0	0	5212	725	25	3		3	EPHA5	4	66286287	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	9070752	66286287	124867989	218	163560											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68930431	68930431	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acaatggatccaaatcctgtGacgaacacacttgttttagg	8	9	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68930431	T	T	68930431	2	4	208	1	0	0	0	0	0	0	0	1	16366	1277	45	3		3	TMPRSS11F	4	68930431	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	2644144	68930431	122223845	219	163561											
CSN2	1447	broad.mit.edu	37	chr4	70822904	70822904	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttatctaaactgttttttTaattcatttactctacattt	1	7	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70822904	A	A	70822904	1	1	208	0	1	0	0	0	0	0	0	0	3982	1769	61	5		5	CSN2	4	70822904	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1892473	70822904	120331372	220	163562											
ALB	213	broad.mit.edu	37	chr4	74283396	74283396	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaagactatgtgagtcttTaaaaaaatataataaattaa	5	3	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74283396	C	C	74283396	1	2	208	0	1	0	0	0	0	0	0	0	486	1769	61	5		5	ALB	4	74283396	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	3460492	74283396	116870880	221	163563											
PPEF2	5470	broad.mit.edu	37	chr4	76806097	76806097	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattggtcttatatttccttTccagagaggctaaggttagg	10	6	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76806097	G	G	76806097	1	3	208	0	1	0	0	0	0	0	0	0	12404	1798	62	5		5	PPEF2	4	76806097	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2522701	76806097	114348179	222	163564											
SHROOM3	57619	broad.mit.edu	37	chr4	77675915	77675915	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcgctgcctcagtggccaCctccttctcgagcaaagtgg	10	15	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77675915	T	T	77675915	3	4	208	1	0	0	0	0	1	0	0	0	14408	507	18	4	4305	4	SHROOM3	4	77675915	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	869818	77675915	113478361	223	163565											
MEPE	56955	broad.mit.edu	37	chr4	88767146	88767146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggttgagtttcattaccctCctgcaccctcaaaagagaaa	7	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88767146	A	A	88767146	3	1	208	1	0	0	0	0	1	0	0	0	9571	855	30	3	1136	3	MEPE	4	88767146	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	11091231	88767146	102387130	224	163566											
FAM13A	10144	broad.mit.edu	37	chr4	89709022	89709022	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctgaactttgacctcCagagttattaacatcaaaaa	5	10	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89709022	A	A	89709022	4	1	208	1	0	0	0	0	0	1	0	0	5498	603	21	2	1978	2	FAM13A	4	89709022	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	941876	89709022	101445254	225	163567											
PDLIM5	10611	broad.mit.edu	37	chr4	95507529	95507529	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagttaaacaaaacaaacTaatattggatattgcttatt	5	4	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95507529	A	A	95507529	1	1	208	0	1	0	0	0	0	0	0	0	11777	1537	53	5		5	PDLIM5	4	95507529	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	5798507	95507529	95646747	226	163568											
ADH4	127	broad.mit.edu	37	chr4	100063931	100063931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctttgcatttaataaCctgaaagagagaaagaaaag	10	5	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100063931	A	A	100063931	3	1	208	1	0	0	0	0	1	0	0	0	310	521	18	3	1155	3	ADH4	4	100063931	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	4556402	100063931	91090345	227	163569											
CENPE	1062	broad.mit.edu	37	chr4	104070561	104070561	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgtttttcttggagttgcTggctcttaaaatgcacaatt	9	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104070561	A	A	104070561	3	1	208	1	0	0	0	0	1	0	0	0	3260	1580	55	5	4796	5	CENPE	4	104070561	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	4006630	104070561	87083715	228	163570											
PAPSS1	9061	broad.mit.edu	37	chr4	108566169	108566169	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgcttatgggtatcctgcAttaacagggcatgtccattg	11	8	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108566169	G	G	108566169	3	3	208	1	0	0	0	0	1	0	0	0	11528	217	8	5	591	5	PAPSS1	4	108566169	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	4495608	108566169	82588107	229	163571											
AGXT2L1	64850	broad.mit.edu	37	chr4	109663777	109663777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctttcagcatctgcaagaCaggcacacaaagctccagtg	8	12	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109663777	A	A	109663777	1	1	208	0	1	0	0	0	0	0	0	0	406	493	17	3		3	AGXT2L1	4	109663777	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1097608	109663777	81490499	230	163572											
ANK2	287	broad.mit.edu	37	chr4	114153292	114153292	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatacaaatgattgaaggtGtctttttttattgcttgtcc	7	5	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114153292	A	A	114153292	1	1	208	0	1	0	0	0	0	0	0	0	621	1392	48	4		4	ANK2	4	114153292	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	4489515	114153292	77000984	231	163573											
PRSS12	8492	broad.mit.edu	37	chr4	119229818	119229818	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctacaaaacacaattgttCtttttaatcagctataaaat	2	8	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119229818	A	A	119229818	1	1	208	0	1	0	0	0	0	0	0	0	12721	928	32	3		3	PRSS12	4	119229818	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	5076526	119229818	71924458	232	163574											
PHF17	79960	broad.mit.edu	37	chr4	129752875	129752875	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcttgggttaagtgctgtctCattgctttgcaggctgcctg	12	9	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129752875	T	T	129752875	1	4	208	0	1	0	0	0	0	0	0	0	11923	841	29	4		4	PHF17	4	129752875	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	10523057	129752875	61401401	233	163575											
RNF150	57484	broad.mit.edu	37	chr4	141889013	141889013	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggaatcattatggccaCgatgtcttctacacctgtgg	9	11	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141889013	T	T	141889013	3	4	208	1	0	0	0	0	1	0	0	0	13562	536	19	4	841	4	RNF150	4	141889013	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	12136138	141889013	49265263	234	163576											
ZNF330	27309	broad.mit.edu	37	chr4	142148040	142148040	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagactagtacgttttcaaGgataagaaaatgtcattctg	8	5	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142148040	A	A	142148040	1	1	208	0	1	0	0	0	0	0	0	0	17974	1015	35	4		4	ZNF330	4	142148040	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	259027	142148040	49006236	235	163577											
IL15	3600	broad.mit.edu	37	chr4	142653880	142653880	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccaatttaatctctctctAtattttgcagaatgtaacag	5	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142653880	G	G	142653880	1	3	208	0	1	0	0	0	0	0	0	0	7701	464	16	5		5	IL15	4	142653880	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	505840	142653880	48500396	236	163578											
LRBA	987	broad.mit.edu	37	chr4	151604509	151604509	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatactgattggataaataTggatctataaagatccataa	6	5	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151604509	C	C	151604509	1	2	208	0	1	0	0	0	0	0	0	0	9018	1479	51	5		5	LRBA	4	151604509	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	8950629	151604509	39549767	237	163579											
PET112L	5188	broad.mit.edu	37	chr4	152682229	152682229	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgcattaaaaacgccataGgctcggaccggaagactact	9	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152682229	T	T	152682229	1	4	208	0	1	0	0	0	0	0	0	0	11828	1015	35	2		2	PET112L	4	152682229	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	1077720	152682229	38472047	238	163580											
RXFP1	59350	broad.mit.edu	37	chr4	159572982	159572982	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacccaattctctatactctGaccacaagaccatttaaaga	3	12	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159572982	T	T	159572982	2	4	208	1	0	0	0	0	0	0	0	1	13870	1277	45	3		3	RXFP1	4	159572982	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	6890753	159572982	31581294	239	163581											
MARCH1	55016	broad.mit.edu	37	chr4	164507069	164507069	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctctcttcatccccttcGcagtgacagattctgcagaa	9	13	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164507069	A	A	164507069	2	1	208	1	0	0	0	0	0	0	0	1	9390	1079	38	4		4	MARCH1	4	164507069	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	4934087	164507069	26647207	240	163582											
GALNTL6	442117	broad.mit.edu	37	chr4	173150975	173150975	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagtgtctcatttgtcaCgtaaaggatctctaattagc	8	9	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173150975	G	G	173150975	1	3	208	0	1	0	0	0	0	0	0	0	6287	551	19	4		4	GALNTL6	4	173150975	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	8643906	173150975	18003301	241	163583											
GALNT7	51809	broad.mit.edu	37	chr4	174169580	174169580	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccgcagcgtcaatgacttAcgccaagaagagtaagcaca	10	11	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	174169580	G	G	174169580	2	3	208	1	0	0	0	0	0	0	0	1	6280	388	14	5		5	GALNT7	4	174169580	Silent	SNP	A	TCGA-73-4670-01A-01D-1265-08	1018605	174169580	16984696	242	163584											
NEIL3	55247	broad.mit.edu	37	chr4	178257373	178257373	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gttaaaaaacagaaaggccgGatgctaggtgatgtgctaat	12	5	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178257373	C	C	178257373	2	2	208	1	0	0	0	0	0	0	0	1	10415	1161	41	4		4	NEIL3	4	178257373	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	4087793	178257373	12896903	243	163585											
ODZ3	55714	broad.mit.edu	37	chr4	183696202	183696202	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatccgacggttgccaaaAgaaacatgactttgcctggc	9	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	183696202	C	C	183696202	2	2	208	1	0	0	0	0	0	0	0	1	10931	64	3	5		5	ODZ3	4	183696202	Silent	SNP	A	TCGA-73-4670-01A-01D-1265-08	5438829	183696202	7458074	244	163586											
CLPTM1L	81037	broad.mit.edu	37	chr5	1326088	1326088	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagctcaggccagagcgctgGaggctggacctgggcctcta	15	13	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1326088	C	C	1326088	1	2	208	0	1	0	0	0	0	0	0	0	3587	1189	41	4		4	CLPTM1L	5	1326088	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08		1326088	179589172	245	163587											
ADAMTS16	170690	broad.mit.edu	37	chr5	5232579	5232579	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttggtccccatgctccagGacctgcggagggggagtatc	14	12	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5232579	T	T	5232579	3	4	208	1	0	0	0	0	1	0	0	0	261	1165	41	3	1846	3	ADAMTS16	5	5232579	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3906491	5232579	175682681	246	163588											
KIAA0947	23379	broad.mit.edu	37	chr5	5463749	5463749	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggtgtagctgtcttgccAcatgtggaccaggtcacact	12	10	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5463749	T	T	5463749	2	4	208	1	0	0	0	0	0	0	0	1	8272	146	6	5		5	KIAA0947	5	5463749	Silent	SNP	A	TCGA-73-4670-01A-01D-1265-08	231170	5463749	175451511	247	163589											
ADCY2	108	broad.mit.edu	37	chr5	7773220	7773220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttatttgagaggtgagCcacggcctcttccttctctt	10	11	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7773220	A	A	7773220	1	1	208	0	1	0	0	0	0	0	0	0	294	754	26	3		3	ADCY2	5	7773220	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2309471	7773220	173142040	248	163590											
C5orf49	134121	broad.mit.edu	37	chr5	7835309	7835309	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgacacagagataggaagtGagcacacgctgttggaaaaa	12	7	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7835309	C	C	7835309	1	2	208	0	1	0	0	0	0	0	0	0	2330	1305	45	4		4	C5orf49	5	7835309	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	62089	7835309	173079951	249	163591											
CTNND2	1501	broad.mit.edu	37	chr5	11364947	11364947	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttctggggactgcagggcCcgcaactctgggcccaggtg	16	12	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11364947	G	G	11364947	2	3	208	1	0	0	0	0	0	0	0	1	4054	610	22	4		4	CTNND2	5	11364947	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	3529638	11364947	169550313	250	163592											
CDH12	1010	broad.mit.edu	37	chr5	21975206	21975206	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atttgcctactcacccacagGagacatttctggaacagtag	8	11	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21975206	C	C	21975206	3	2	208	1	0	0	0	0	1	0	0	0	3128	1174	41	4	1904	4	CDH12	5	21975206	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	10610259	21975206	158940054	251	163593											
CDH12	1010	broad.mit.edu	37	chr5	22142627	22142627	+	Intron	DEL	A	-	-													ggataccgaatcaacacaagAaaagagagaaactggggatg							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22142627	-	-	22142627	6	5	208	0	1	1	0	1	0	0	0	0	3128	261	9	0		0	CDH12	5	22142627	Intron	DEL	A	TCGA-73-4670-01A-01D-1265-08	167421	22142627	158772633	252	163594											
CDH10	1008	broad.mit.edu	37	chr5	24578542	24578542	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatggagactttattccttTgccatacaaagagtaatagt	7	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24578542	G	G	24578542	1	3	208	0	1	0	0	0	0	0	0	0	3126	1827	63	5		5	CDH10	5	24578542	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2435915	24578542	156336718	253	163595											
RNASEN	29102	broad.mit.edu	37	chr5	31521114	31521114	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttagcttttcacaggtcAtcttggacagactctgaggc	10	10	4	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31521114	G	G	31521114	1	3	208	0	1	0	0	0	0	0	0	0	13528	232	8	5		5	RNASEN	5	31521114	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	6942572	31521114	149394146	254	163596											
ADAMTS12	81792	broad.mit.edu	37	chr5	33560990	33560990	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catatgtaacaaacctgaacGttgtgcacatgtaccctaga	7	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33560990	A	A	33560990	1	1	208	0	1	0	0	0	0	0	0	0	257	1160	40	4		4	ADAMTS12	5	33560990	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2039876	33560990	147354270	255	163597											
ADAMTS12	81792	broad.mit.edu	37	chr5	33588801	33588801	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgctggcagtctgtgGgcgggagagcctgctcgtca	18	10	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33588801	T	T	33588801	3	4	208	1	0	0	0	0	1	0	0	0	257	1232	43	2	2044	2	ADAMTS12	5	33588801	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	27811	33588801	147326459	256	163598											
SPEF2	79925	broad.mit.edu	37	chr5	35795729	35795729	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctagagacaagattggctCagtctctgtggcttttagag	11	8	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35795729	A	A	35795729	1	1	208	0	1	0	0	0	0	0	0	0	15153	841	29	3		3	SPEF2	5	35795729	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2206928	35795729	145119531	257	163599											
LMBRD2	92255	broad.mit.edu	37	chr5	36105281	36105281	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagtcctgttattagccCtggtatatttgaatgcagct	8	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36105281	A	A	36105281	3	1	208	1	0	0	0	0	1	0	0	0	8917	681	24	2	179	2	LMBRD2	5	36105281	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	309552	36105281	144809979	258	163600											
EGFLAM	133584	broad.mit.edu	37	chr5	38425153	38425153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagccgactcctacatttGcctctgtccccttgggttta	7	14	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38425153	T	T	38425153	3	4	208	1	0	0	0	0	1	0	0	0	5006	1319	46	3	1833	3	EGFLAM	5	38425153	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2319872	38425153	142490107	259	163601											
RICTOR	253260	broad.mit.edu	37	chr5	38975680	38975680	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatgattcccattttactgGctagaaatcgtgcttctctg	7	10	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38975680	C	C	38975680	3	2	208	1	0	0	0	0	1	0	0	0	13467	1203	42	4	4394	4	RICTOR	5	38975680	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	550527	38975680	141939580	260	163602											
C6	729	broad.mit.edu	37	chr5	41160328	41160328	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacattcagtccctgagaGggtgggtcggccattattag	13	9	1	2	rs146667042		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41160328	T	T	41160328	3	4	208	1	0	0	0	0	1	0	0	0	2338	1000	35	2	1236	2	C6	5	41160328	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2184648	41160328	139754932	261	163603											
ERBB2IP	55914	broad.mit.edu	37	chr5	65317139	65317139	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttaatttttcattactccAttatgaacagaactatgaat	4	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65317139	T	T	65317139	1	4	208	0	1	0	0	0	0	0	0	0	5249	232	8	5		5	ERBB2IP	5	65317139	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	24156811	65317139	115598121	262	163604											
CDK7	1022	broad.mit.edu	37	chr5	68564998	68564998	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaattaaaaaaaaaaaaCccaccttgaaaagtctccct	2	9	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68564998	A	A	68564998	1	1	208	0	1	0	0	0	0	0	0	0	3179	522	18	3		3	CDK7	5	68564998	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3247859	68564998	112350262	263	163605											
IQGAP2	10788	broad.mit.edu	37	chr5	75954153	75954153	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgtgtgggggtgggtagaAtgattctcaccctagaccaa	13	7	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75954153	G	G	75954153	1	3	208	0	1	0	0	0	0	0	0	0	7885	116	4	5		5	IQGAP2	5	75954153	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	7389155	75954153	104961107	264	163606											
THBS4	7060	broad.mit.edu	37	chr5	79355630	79355630	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgactccaacccatgtttcCgaggtgtccaatgtaccgac	9	13	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79355630	T	T	79355630	4	4	208	1	0	0	0	0	0	1	0	0	15979	644	23	4	915	4	THBS4	5	79355630	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	3401477	79355630	101559630	265	163607											
C5orf13	9315	broad.mit.edu	37	chr5	111091510	111091510	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttctattctccctctcttCagtccagggagaccaacctg	7	15	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111091510	T	T	111091510	1	4	208	0	1	0	0	0	0	0	0	0	2305	841	29	4		4	C5orf13	5	111091510	5'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	31735880	111091510	69823750	266	163608											
FTMT	94033	broad.mit.edu	37	chr5	121187857	121187857	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcccgccgccggcccctctCgggtgcgccagaacttccac	12	20	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121187857	T	T	121187857	3	4	208	1	0	0	0	0	1	0	0	0	6145	875	31	4	201	4	FTMT	5	121187857	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	10096347	121187857	59727403	267	163609											
LOX	4015	broad.mit.edu	37	chr5	121402391	121402391	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tagtctattttttcccacttCagaacaccaggcactgattt	5	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121402391	A	A	121402391	1	1	208	0	1	0	0	0	0	0	0	0	8985	841	29	3		3	LOX	5	121402391	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	214534	121402391	59512869	268	163610											
CSNK1G3	1456	broad.mit.edu	37	chr5	122908953	122908953	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggaggtttggtcaggaaAagtatgtatctggaaaaagt	14	2	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122908953	G	G	122908953	1	3	208	0	1	0	0	0	0	0	0	0	3990	29	1	5		5	CSNK1G3	5	122908953	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1506562	122908953	58006307	269	163611											
LMNB1	4001	broad.mit.edu	37	chr5	126156598	126156598	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgttttatttttcccatAtaggttgaagctgtctccaa	6	7	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126156598	G	G	126156598	1	3	208	0	1	0	0	0	0	0	0	0	8923	464	16	5		5	LMNB1	5	126156598	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	3247645	126156598	54758662	270	163612											
RAPGEF6	51735	broad.mit.edu	37	chr5	130766776	130766776	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagttctagagcagcttttaGaacaggaatagggctcagag	12	6	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130766776	C	C	130766776	3	2	208	1	0	0	0	0	1	0	0	0	13156	942	33	4	576	4	RAPGEF6	5	130766776	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4610178	130766776	50148484	271	163613											
PCDHB12	56124	broad.mit.edu	37	chr5	140589131	140589131	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcactgctctggatggcGggtcccctcccaggtctgga	12	15	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140589131	C	C	140589131	3	2	208	1	0	0	0	0	1	0	0	0	11631	1116	39	4	654	4	PCDHB12	5	140589131	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	9822355	140589131	40326129	272	163614											
STK32A	202374	broad.mit.edu	37	chr5	146750236	146750236	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagaccgtatcatattcgctCcagtacttccagcaaggaaa	8	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146750236	T	T	146750236	3	4	208	1	0	0	0	0	1	0	0	0	15415	855	30	4	743	4	STK32A	5	146750236	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	6161105	146750236	34165024	273	163615											
ABLIM3	22885	broad.mit.edu	37	chr5	148622033	148622033	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctcccctccccactgtcCcttcctggtctgtctggcag	7	19	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148622033	A	A	148622033	1	1	208	0	1	0	0	0	0	0	0	0	96	638	22	2		2	ABLIM3	5	148622033	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1871797	148622033	32293227	274	163616											
ZNF300	91975	broad.mit.edu	37	chr5	150276176	150276176	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actctgatcaggtttttttcTtgaattgctcttataacaac	5	8	4	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150276176	C	C	150276176	3	2	208	1	0	0	0	0	1	0	0	0	17957	1617	56	5	1193	5	ZNF300	5	150276176	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1654143	150276176	30639084	275	163617											
TNIP1	10318	broad.mit.edu	37	chr5	150444787	150444787	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatgccccagaaggcagTcccccactttaagctggtct	9	14	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150444787	G	G	150444787	1	3	208	0	1	0	0	0	0	0	0	0	16437	1682	58	5		5	TNIP1	5	150444787	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	168611	150444787	30470473	276	163618											
CNOT8	9337	broad.mit.edu	37	chr5	154254903	154254903	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgtgggcggctctatggCttaggcacaggagtggccca	15	10	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154254903	A	A	154254903	2	1	208	1	0	0	0	0	0	0	0	1	3657	784	28	3		3	CNOT8	5	154254903	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	3810116	154254903	26660357	277	163619											
SGCD	6444	broad.mit.edu	37	chr5	155935753	155935753	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcattattgttgctctAgaatctaaatctggaggaat	11	5	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155935753	G	G	155935753	1	3	208	0	1	0	0	0	0	0	0	0	14314	435	15	5		5	SGCD	5	155935753	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1680850	155935753	24979507	278	163620											
TIMD4	91937	broad.mit.edu	37	chr5	156353204	156353204	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattataggcatgagccacCgtgcctggccactactgtgg	13	11	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156353204	T	T	156353204	1	4	208	0	1	0	0	0	0	0	0	0	16026	667	23	4		4	TIMD4	5	156353204	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	417451	156353204	24562056	279	163621											
HRH2	3274	broad.mit.edu	37	chr5	175111083	175111083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctatgccaactcagccCtgaaccccatcctgtatgct	8	15	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175111083	A	A	175111083	3	1	208	1	0	0	0	0	1	0	0	0	7423	680	24	2	849	2	HRH2	5	175111083	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	18757879	175111083	5804177	280	163622											
FGFR4	2264	broad.mit.edu	37	chr5	176518924	176518924	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgagtcaggcagcttggTgagcaggtgggtcaggggaa	19	5	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176518924	A	A	176518924	1	1	208	0	1	0	0	0	0	0	0	0	5925	1711	59	5		5	FGFR4	5	176518924	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1407841	176518924	4396336	281	163623											
DBN1	1627	broad.mit.edu	37	chr5	176893887	176893887	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgcgcccgggggcccctgGagcgctccgggcgggcaggc	21	15	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176893887	A	A	176893887	1	1	208	0	1	0	0	0	0	0	0	0	4285	1189	41	4		4	DBN1	5	176893887	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	374963	176893887	4021373	282	163624											
CANX	821	broad.mit.edu	37	chr5	179150103	179150103	+	Intron	DEL	C	-	-													tctgtgttaaggttttttttCttcatttggcaatattggca							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179150103	-	-	179150103	6	5	208	0	1	1	0	1	0	0	0	0	2644	928	32	0		0	CANX	5	179150103	Intron	DEL	C	TCGA-73-4670-01A-01D-1265-08	2256216	179150103	1765157	283	163625											
EXOC2	55770	broad.mit.edu	37	chr6	572866	572866	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctctggcaaggaagagcCcctctccctcatggctgacc	10	17	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	572866	A	A	572866	1	1	208	0	1	0	0	0	0	0	0	0	5344	638	22	2		2	EXOC2	6	572866	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08		572866	170542201	284	163626											
CDYL	9425	broad.mit.edu	37	chr6	4892131	4892131	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaggagagcacattgaccaGaacaaacaggacctctccca	9	12	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4892131	A	A	4892131	3	1	208	1	0	0	0	0	1	0	0	0	3215	942	33	4	215	4	CDYL	6	4892131	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4319265	4892131	166222936	285	163627											
C6orf105	84830	broad.mit.edu	37	chr6	11778995	11778995	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagaagtcttcgtcatggCgagtgctgaccggggcaccg	15	10	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11778995	A	A	11778995	1	1	208	0	1	0	0	0	0	0	0	0	2341	783	27	3		3	C6orf105	6	11778995	5'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	6886864	11778995	159336072	286	163628											
FAM65B	9750	broad.mit.edu	37	chr6	24977090	24977090	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtggttggatggcaagcatGtggtctttggcaaagtgaaa	15	4	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24977090	A	A	24977090	1	1	208	0	1	0	0	0	0	0	0	0	5651	1392	48	4		4	FAM65B	6	24977090	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	13198095	24977090	146137977	287	163629											
HIST1H1A	3024	broad.mit.edu	37	chr6	26020600	26020600	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatagaccaatcagagtgtgTaacgtcatatttagcgtctt	9	7	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26020600	G	G	26020600	1	3	208	0	1	0	0	0	0	0	0	0	7189	1653	57	5		5	HIST1H1A	6	26020600	5'Flank	SNP	T	TCGA-73-4670-01A-01D-1265-08	1043510	26020600	145094467	288	163630											
ZNF192	7745	broad.mit.edu	37	chr6	28116494	28116494	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcagttcttgaccatcctAcctgaggagctccagacact	9	13	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28116494	G	G	28116494	2	3	208	1	0	0	0	0	0	0	0	1	17882	378	14	5		5	ZNF192	6	28116494	Silent	SNP	A	TCGA-73-4670-01A-01D-1265-08	2095894	28116494	142998573	289	163631											
MOG	4340	broad.mit.edu	37	chr6	29637848	29637848	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagccaccacacctggcagtTgttacatttttaatgaaaga	8	9	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29637848	A	A	29637848	1	1	208	0	1	0	0	0	0	0	0	0	9787	1827	63	5		5	MOG	6	29637848	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1521354	29637848	141477219	290	163632											
HLA-DOA	3111	broad.mit.edu	37	chr6	32975902	32975902	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcgggcaaagtcaccaaaCtcaggcagacgccacacggc	11	14	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32975902	T	T	32975902	2	4	208	1	0	0	0	0	0	0	0	1	7267	564	20	4		4	HLA-DOA	6	32975902	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	3338054	32975902	138139165	291	163633											
PNPLA1	285848	broad.mit.edu	37	chr6	36260888	36260888	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tactgtggcctcatccccccGacttaccgcggtgtggtgag	12	14	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36260888	A	A	36260888	2	1	208	1	0	0	0	0	0	0	0	1	12259	1045	37	4		4	PNPLA1	6	36260888	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	3284986	36260888	134854179	292	163634											
DNAH8	1769	broad.mit.edu	37	chr6	38994558	38994558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatttgctttgcagtgagGgttccctccatcatagccag	9	12	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38994558	T	T	38994558	1	4	208	0	1	0	0	0	0	0	0	0	4647	1247	43	2		2	DNAH8	6	38994558	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2733670	38994558	132120509	293	163635											
LRFN2	57497	broad.mit.edu	37	chr6	40360309	40360309	+	Frame_Shift_Del	DEL	G	-	-													cttggaggcggtggctgggcGccgttggtctgcgagtacac					rs147506870	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40360309	-	-	40360309	7	5	208	1	0	1	0	1	0	0	0	0	9025	1074	38	0	630	0	LRFN2	6	40360309	Frame_Shift_Del	DEL	G	TCGA-73-4670-01A-01D-1265-08	1365751	40360309	130754758	294	163636											
UBR2	23304	broad.mit.edu	37	chr6	42571302	42571302	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccctttttttctttttcTtttttttctgttgtttcttt	3	7	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42571302	C	C	42571302	1	2	208	0	1	0	0	0	0	0	0	0	17028	1624	56	5		5	UBR2	6	42571302	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2210993	42571302	128543765	295	163637											
PKHD1	5314	broad.mit.edu	37	chr6	51613441	51613441	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccgaagttctgaatttcCacattaagaagttgaaggac	9	8	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51613441	T	T	51613441	2	4	208	1	0	0	0	0	0	0	0	1	12066	581	21	4		4	PKHD1	6	51613441	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	9042139	51613441	119501626	296	163638											
KHDRBS2	202559	broad.mit.edu	37	chr6	62407302	62407302	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacaatcctaaataaatcttCagtaagaaaaacacaggtta	4	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62407302	A	A	62407302	1	1	208	0	1	0	0	0	0	0	0	0	8217	841	29	3		3	KHDRBS2	6	62407302	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	10793861	62407302	108707765	297	163639											
COL12A1	1303	broad.mit.edu	37	chr6	75827262	75827262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactacaaagacactgaacCctgcaaagtagcatttatag	6	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75827262	T	T	75827262	3	4	208	1	0	0	0	0	1	0	0	0	3701	637	22	4	1916	4	COL12A1	6	75827262	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	13419960	75827262	95287805	298	163640											
BCKDHB	594	broad.mit.edu	37	chr6	80982857	80982857	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttttctctttcagtctgtGatcaaaacagggcgactgct	8	10	5	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80982857	C	C	80982857	2	2	208	1	0	0	0	0	0	0	0	1	1365	1277	45	4		4	BCKDHB	6	80982857	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	5155595	80982857	90132210	299	163641											
DOPEY1	23033	broad.mit.edu	37	chr6	83851931	83851931	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatttctttaagtattgatTaaaatttgaggtcaaggcta	7	3	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83851931	C	C	83851931	1	2	208	0	1	0	0	0	0	0	0	0	4747	1769	61	5		5	DOPEY1	6	83851931	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2869074	83851931	87263136	300	163642											
PGM3	5238	broad.mit.edu	37	chr6	83898345	83898345	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatcacctggtatctctaCcaataactacaaaggcatct	4	12	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83898345	T	T	83898345	3	4	208	1	0	0	0	0	1	0	0	0	11895	507	18	4	1295	4	PGM3	6	83898345	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	46414	83898345	87216722	301	163643											
CGA	1081	broad.mit.edu	37	chr6	87795419	87795419	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccataaacactaaacaacTtaattttccattccagaaaa	2	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87795419	A	A	87795419	1	1	208	0	1	0	0	0	0	0	0	0	3325	1624	56	5		5	CGA	6	87795419	3'UTR	SNP	T	TCGA-73-4670-01A-01D-1265-08	3897074	87795419	83319648	302	163644											
RARS2	57038	broad.mit.edu	37	chr6	88272379	88272379	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accactgtggctgaagcagaCagaatgaaagcacaatggct	11	9	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88272379	A	A	88272379	1	1	208	0	1	0	0	0	0	0	0	0	13167	493	17	3		3	RARS2	6	88272379	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	476960	88272379	82842688	303	163645											
FUT9	10690	broad.mit.edu	37	chr6	96651512	96651512	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgactctgacttaccgccgtGattcagatatccaagtgcct	8	12	2	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96651512	A	A	96651512	3	1	208	1	0	0	0	0	1	0	0	0	6171	1290	45	4	483	4	FUT9	6	96651512	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	8379133	96651512	74463555	304	163646											
GRIK2	2898	broad.mit.edu	37	chr6	102074443	102074443	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagacttctcttcactcagcCgtgccattttagacctggtg	8	13	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102074443	G	G	102074443	3	3	208	1	0	0	0	0	1	0	0	0	6840	652	23	4	482	4	GRIK2	6	102074443	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	5422931	102074443	69040624	305	163647											
REV3L	5980	broad.mit.edu	37	chr6	111751796	111751796	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcagaaaactcaaaagcagGaagacagaacagacacctcg	9	10	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111751796	A	A	111751796	1	1	208	0	1	0	0	0	0	0	0	0	13348	1189	41	4		4	REV3L	6	111751796	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	9677353	111751796	59363271	306	163648											
LAMA4	3910	broad.mit.edu	37	chr6	112462407	112462407	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaatataagaataatggaAgaaaacggagcaagaataaa	9	2	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112462407	G	G	112462407	1	3	208	0	1	0	0	0	0	0	0	0	8680	87	3	5		5	LAMA4	6	112462407	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	710611	112462407	58652660	307	163649											
THEMIS	387357	broad.mit.edu	37	chr6	128134688	128134688	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacgctttggtggccaccacGtgaagaggctccttttcact	10	12	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128134688	C	C	128134688	3	2	208	1	0	0	0	0	1	0	0	0	15983	1136	40	4	960	4	THEMIS	6	128134688	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	15672281	128134688	42980379	308	163650											
ENPP3	5169	broad.mit.edu	37	chr6	131962629	131962629	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggtgatcatgtcacttgGattaggcctggggcttggac	15	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131962629	A	A	131962629	3	1	208	1	0	0	0	0	1	0	0	0	5173	1174	41	4	119	4	ENPP3	6	131962629	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3827941	131962629	39152438	309	163651											
ENPP1	5167	broad.mit.edu	37	chr6	132172456	132172456	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggtatcttccagcgtctTagcggggctttacataggtg	12	10	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132172456	A	A	132172456	1	1	208	0	1	0	0	0	0	0	0	0	5171	1769	61	5		5	ENPP1	6	132172456	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	209827	132172456	38942611	310	163652											
TAAR5	9038	broad.mit.edu	37	chr6	132910781	132910781	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattcacctggtagcagaaTgccgcagggtgctcttcagc	11	13	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132910781	A	A	132910781	2	1	208	1	0	0	0	0	0	0	0	1	15610	1451	51	5		5	TAAR5	6	132910781	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	738325	132910781	38204286	311	163653											
TAAR1	134864	broad.mit.edu	37	chr6	132966892	132966892	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataccaacagtgctcagcaGatctcaccatactgtaaggc	7	12	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132966892	C	C	132966892	3	2	208	1	0	0	0	0	1	0	0	0	15608	942	33	4	772	4	TAAR1	6	132966892	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	56111	132966892	38148175	312	163654											
MAP7	9053	broad.mit.edu	37	chr6	136705034	136705034	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgctctatttctagatcTgtcataataacacagttttc	4	9	5	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136705034	A	A	136705034	1	1	208	0	1	0	0	0	0	0	0	0	9358	1595	55	5		5	MAP7	6	136705034	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	3738142	136705034	34410033	313	163655											
ECT2L	345930	broad.mit.edu	37	chr6	139167810	139167810	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatcccggattcctgcgtAtgaggtagagtatgttatga	11	7	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139167810	G	G	139167810	3	3	208	1	0	0	0	0	1	0	0	0	4942	449	16	5	921	5	ECT2L	6	139167810	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	2462776	139167810	31947257	314	163656											
FUCA2	2519	broad.mit.edu	37	chr6	143823055	143823055	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tataaaagagtacttggtaaCaagaatgacttaccacacat	6	7	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	143823055	G	G	143823055	1	3	208	0	1	0	0	0	0	0	0	0	6155	493	17	4		4	FUCA2	6	143823055	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	4655245	143823055	27292012	315	163657											
NOX3	50508	broad.mit.edu	37	chr6	155718295	155718295	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggttcccagcatcctccccTaaattaatcagggaggtgga	10	11	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155718295	C	C	155718295	1	2	208	0	1	0	0	0	0	0	0	0	10652	1537	53	5		5	NOX3	6	155718295	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	11895240	155718295	15396772	316	163658											
SERAC1	84947	broad.mit.edu	37	chr6	158551401	158551401	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacattttgaaaatgtaaaTtacctcagaatgttttacta	4	6	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158551401	C	C	158551401	1	2	208	0	1	0	0	0	0	0	0	0	14187	1508	52	5		5	SERAC1	6	158551401	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2833106	158551401	12563666	317	163659											
TULP4	56995	broad.mit.edu	37	chr6	158914673	158914673	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctctcccggtccccacGgttgcccctgcgcaagccct	11	19	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158914673	T	T	158914673	3	4	208	1	0	0	0	0	1	0	0	0	16902	1116	39	1	1738	1	TULP4	6	158914673	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	363272	158914673	12200394	318	163660											
EZR	7430	broad.mit.edu	37	chr6	159190558	159190558	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtctccaacgtgacacctGagtccccgccacccccactc	6	21	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159190558	T	T	159190558	1	4	208	0	1	0	0	0	0	0	0	0	5378	1305	45	3		3	EZR	6	159190558	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	275885	159190558	11924509	319	163661											
RPS6KA2	6196	broad.mit.edu	37	chr6	166912249	166912249	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgccccctctccaggtggGcgcagcagagccctgctcag	12	17	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166912249	A	A	166912249	1	1	208	0	1	0	0	0	0	0	0	0	13762	1218	42	4		4	RPS6KA2	6	166912249	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	7721691	166912249	4202818	320	163662											
SUN1	23353	broad.mit.edu	37	chr7	901072	901072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattcccaagataagaccgGgatggtggactttgctctgg	13	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	901072	T	T	901072	3	4	208	1	0	0	0	0	1	0	0	0	15509	1232	43	2	2076	2	SUN1	7	901072	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08		901072	158237591	321	163663											
FTSJ2	29960	broad.mit.edu	37	chr7	2281801	2281801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcgcccagctcaccccgCcattggtgttccccgcgcct	10	20	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2281801	A	A	2281801	3	1	208	1	0	0	0	0	1	0	0	0	6148	739	26	3	748	3	FTSJ2	7	2281801	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1380729	2281801	156856862	322	163664											
SDK1	221935	broad.mit.edu	37	chr7	4167083	4167083	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagattttactgacatggacAtccgtgccggaacaggacca	10	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4167083	G	G	4167083	2	3	208	1	0	0	0	0	0	0	0	1	14081	204	8	5		5	SDK1	7	4167083	Silent	SNP	A	TCGA-73-4670-01A-01D-1265-08	1885282	4167083	154971580	323	163665											
THSD7A	221981	broad.mit.edu	37	chr7	11446939	11446939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtacaaacaaacctgtgaGgccacatgtttgagaacatt	9	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11446939	T	T	11446939	3	4	208	1	0	0	0	0	1	0	0	0	16002	1000	35	2	1099	2	THSD7A	7	11446939	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	7279856	11446939	147691724	324	163666											
TMEM106B	54664	broad.mit.edu	37	chr7	12263849	12263849	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataccctcttttccttttCagaaagctgtatgtgatggc	7	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12263849	T	T	12263849	1	4	208	0	1	0	0	0	0	0	0	0	16144	841	29	4		4	TMEM106B	7	12263849	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	816910	12263849	146874814	325	163667											
ISPD	729920	broad.mit.edu	37	chr7	16341066	16341066	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttaataatcgattcagccGcatagagatctcgtttgtag	8	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16341066	A	A	16341066	3	1	208	1	0	0	0	0	1	0	0	0	7934	1087	38	4	564	4	ISPD	7	16341066	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4077217	16341066	142797597	326	163668											
ABCB5	340273	broad.mit.edu	37	chr7	20762799	20762799	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaaaccgcagcaatgactgGatttgccaacaaagataagc	9	9	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20762799	T	T	20762799	3	4	208	1	0	0	0	0	1	0	0	0	44	1174	41	3	2701	3	ABCB5	7	20762799	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4421733	20762799	138375864	327	163669											
RAPGEF5	9771	broad.mit.edu	37	chr7	22196399	22196399	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctaactgctgcccaccCccaaaccctcacttcaaacc	5	19	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22196399	A	A	22196399	1	1	208	0	1	0	0	0	0	0	0	0	13155	638	22	2		2	RAPGEF5	7	22196399	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1433600	22196399	136942264	328	163670											
BBS9	27241	broad.mit.edu	37	chr7	33185912	33185912	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtctactattctgggagaTaaagaagaatttgatcaagg	11	4	3	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33185912	C	C	33185912	2	2	208	1	0	0	0	0	0	0	0	1	1347	1403	49	5		5	BBS9	7	33185912	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	10989513	33185912	125952751	329	163671											
ELMO1	9844	broad.mit.edu	37	chr7	36909839	36909839	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagaataagggtaagagacGtaaaaggaatcgggacagga	14	3	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36909839	C	C	36909839	1	2	208	0	1	0	0	0	0	0	0	0	5107	1160	40	4		4	ELMO1	7	36909839	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3723927	36909839	122228824	330	163672											
GPR141	353345	broad.mit.edu	37	chr7	37780619	37780619	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcattatgttgatggtGcagaagctacgccactcttt	8	9	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37780619	T	T	37780619	2	4	208	1	0	0	0	0	0	0	0	1	6714	1306	46	3		3	GPR141	7	37780619	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	870780	37780619	121358044	331	163673											
C7orf10	79783	broad.mit.edu	37	chr7	40536033	40536033	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttttctgtccagattgaCttatatcaaggtacctttgc	7	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40536033	G	G	40536033	1	3	208	0	1	0	0	0	0	0	0	0	2401	580	20	4		4	C7orf10	7	40536033	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2755414	40536033	118602630	332	163674											
GLI3	2737	broad.mit.edu	37	chr7	42004566	42004566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacggctggctgcccatgcCgtgagcccctggcaggcagc	15	15	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42004566	A	A	42004566	3	1	208	1	0	0	0	0	1	0	0	0	6503	652	23	1	641	1	GLI3	7	42004566	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1468533	42004566	117134097	333	163675											
HECW1	23072	broad.mit.edu	37	chr7	43351088	43351088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtccttctggtatcaaGtgggttagagccgggagagg	15	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43351088	T	T	43351088	1	4	208	0	1	0	0	0	0	0	0	0	7109	1044	36	3		3	HECW1	7	43351088	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1346522	43351088	115787575	334	163676											
PKD1L1	168507	broad.mit.edu	37	chr7	47869272	47869272	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacacagagctgtcctcccGtcccctaatcatgaacagga	7	16	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47869272	T	T	47869272	1	4	208	0	1	0	0	0	0	0	0	0	12059	1160	40	3		3	PKD1L1	7	47869272	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	4518184	47869272	111269391	335	163677											
PKD1L1	168507	broad.mit.edu	37	chr7	47927830	47927830	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattcatgttaggcatgttTaaatcaccctactttggatc	6	8	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47927830	G	G	47927830	1	3	208	0	1	0	0	0	0	0	0	0	12059	1769	61	5		5	PKD1L1	7	47927830	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	58558	47927830	111210833	336	163678											
SUMF2	25870	broad.mit.edu	37	chr7	56140737	56140737	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gacagaagctgagatgtttgGatggagctttgtctttgagg	15	4	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56140737	A	A	56140737	3	1	208	1	0	0	0	0	1	0	0	0	15504	1174	41	4	339	4	SUMF2	7	56140737	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	8212907	56140737	102997926	337	163679											
MLXIPL	51085	broad.mit.edu	37	chr7	73020022	73020022	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggggctcgccccacctgaGatgtccatgaagtcatccag	12	13	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73020022	A	A	73020022	2	1	208	1	0	0	0	0	0	0	0	1	9730	932	33	4		4	MLXIPL	7	73020022	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	16879285	73020022	86118641	338	163680											
RFC2	5982	broad.mit.edu	37	chr7	73668671	73668671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagggtcagagtcctgggCctccacctcgcccgcgccac	13	18	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73668671	A	A	73668671	3	1	208	1	0	0	0	0	1	0	0	0	13353	739	26	3	1065	3	RFC2	7	73668671	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	648649	73668671	85469992	339	163681											
CLIP2	7461	broad.mit.edu	37	chr7	73770667	73770667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgccaggctctgaagaGgcagaggaggcaggggaggc	18	8	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73770667	A	A	73770667	1	1	208	0	1	0	0	0	0	0	0	0	3565	1015	35	4		4	CLIP2	7	73770667	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	101996	73770667	85367996	340	163682											
SEMA3D	223117	broad.mit.edu	37	chr7	84710911	84710911	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatctgcaaaacatttcaAagtatgttacaacctgaata	4	7	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84710911	T	T	84710911	1	4	208	0	1	0	0	0	0	0	0	0	14140	29	1	5		5	SEMA3D	7	84710911	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	10940244	84710911	74427752	341	163683											
ZNF804B	219578	broad.mit.edu	37	chr7	88966215	88966215	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatccagccacaacttctAtcatccacttgaatccttta	2	13	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88966215	G	G	88966215	3	3	208	1	0	0	0	0	1	0	0	0	18300	449	16	5	3933	5	ZNF804B	7	88966215	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	4255304	88966215	70172448	342	163684											
AKAP9	10142	broad.mit.edu	37	chr7	91603226	91603226	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattcctgaatctacaataAtgagaactctacatagtgga	7	7	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91603226	G	G	91603226	3	3	208	1	0	0	0	0	1	0	0	0	459	101	4	5	256	5	AKAP9	7	91603226	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	2637011	91603226	67535437	343	163685											
SAMD9L	219285	broad.mit.edu	37	chr7	92763391	92763391	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acgggcgggcaaaaaccttcTtgatgaccgagtcaccgatt	11	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92763391	C	C	92763391	3	2	208	1	0	0	0	0	1	0	0	0	13938	1617	56	5	2864	5	SAMD9L	7	92763391	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1160165	92763391	66375272	344	163686											
CALCR	799	broad.mit.edu	37	chr7	93108688	93108688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccttggtatgcgggtaaCtgctgcattcggtcatagca	11	10	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93108688	A	A	93108688	3	1	208	1	0	0	0	0	1	0	0	0	2605	564	20	3	1337	3	CALCR	7	93108688	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	345297	93108688	66029975	345	163687											
COL1A2	1278	broad.mit.edu	37	chr7	94042429	94042429	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacggtgataaaggtcatgCtggtcttgctggtgctcggg	15	7	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94042429	T	T	94042429	3	4	208	1	0	0	0	0	1	0	0	0	3710	797	28	4	1640	4	COL1A2	7	94042429	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	933741	94042429	65096234	346	163688											
SLC25A13	10165	broad.mit.edu	37	chr7	95751121	95751121	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaatttacctgataccaaaGagttagttaagaacacatta	5	6	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95751121	A	A	95751121	1	1	208	0	1	0	0	0	0	0	0	0	14589	957	33	4		4	SLC25A13	7	95751121	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1708692	95751121	63387542	347	163689											
SHFM1	7979	broad.mit.edu	37	chr7	96339117	96339117	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcccagataagcagaaaaGttggaaccctcactcttcct	6	14	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96339117	C	C	96339117	1	2	208	0	1	0	0	0	0	0	0	0	14391	1044	36	4		4	SHFM1	7	96339117	5'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	587996	96339117	62799546	348	163690											
NPTX2	4885	broad.mit.edu	37	chr7	98257786	98257786	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagttcaacatatgggacCgcgtccttcgcgcacaagaa	10	13	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98257786	G	G	98257786	3	3	208	1	0	0	0	0	1	0	0	0	10698	652	23	4	1159	4	NPTX2	7	98257786	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1918669	98257786	60880877	349	163691											
STAG3	10734	broad.mit.edu	37	chr7	99802368	99802368	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttggaccccagcagctgcAgaaccgtgacctcgtggtca	11	13	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99802368	G	G	99802368	3	3	208	1	0	0	0	0	1	0	0	0	15362	188	7	5	3023	5	STAG3	7	99802368	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	1544582	99802368	59336295	350	163692											
C7orf51	222950	broad.mit.edu	37	chr7	100087052	100087052	+	Frame_Shift_Del	DEL	G	-	-													cctatgagagcctcaaggctGggggggtgctgaataagggc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100087052	-	-	100087052	7	5	208	1	0	1	0	1	0	0	0	0	2425	1348	47	0	1718	0	C7orf51	7	100087052	Frame_Shift_Del	DEL	G	TCGA-73-4670-01A-01D-1265-08	284684	100087052	59051611	351	163693											
EPO	2056	broad.mit.edu	37	chr7	100319144	100319144	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccacagccacccttctccCtccccgcctgactctcagcc	4	23	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100319144	T	T	100319144	1	4	208	0	1	0	0	0	0	0	0	0	5230	696	24	4		4	EPO	7	100319144	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	232092	100319144	58819519	352	163694											
NAPEPLD	222236	broad.mit.edu	37	chr7	102769310	102769310	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acataacacaaggtactattTgttagccaataaaaatttct	4	7	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102769310	C	C	102769310	1	2	208	0	1	0	0	0	0	0	0	0	10257	1827	63	5		5	NAPEPLD	7	102769310	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2450166	102769310	56369353	353	163695											
BCAP29	55973	broad.mit.edu	37	chr7	107236320	107236320	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttttcttagagttttgaGacgtctggttacgcttatta	8	5	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107236320	A	A	107236320	3	1	208	1	0	0	0	0	1	0	0	0	1351	942	33	4	367	4	BCAP29	7	107236320	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4467010	107236320	51902343	354	163696											
CBLL1	79872	broad.mit.edu	37	chr7	107394313	107394313	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttagaattgtgtaagaagGtaattttaattatatcattt	6	2	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107394313	A	A	107394313	1	1	208	0	1	0	0	0	0	0	0	0	2729	1276	44	4		4	CBLL1	7	107394313	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	157993	107394313	51744350	355	163697											
DLD	1738	broad.mit.edu	37	chr7	107543852	107543852	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaagactatcatttcAtaagtgctttttgattattt	5	4	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107543852	G	G	107543852	1	3	208	0	1	0	0	0	0	0	0	0	4591	232	8	5		5	DLD	7	107543852	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	149539	107543852	51594811	356	163698											
NRCAM	4897	broad.mit.edu	37	chr7	107984430	107984430	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtccatgactaagatctacCatggacccctggactggcct	9	13	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107984430	T	T	107984430	1	4	208	0	1	0	0	0	0	0	0	0	10739	609	21	4		4	NRCAM	7	107984430	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	440578	107984430	51154233	357	163699											
FOXP2	93986	broad.mit.edu	37	chr7	114211084	114211084	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataatgttaagatacagatGtaattagttgattttctctt	6	3	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114211084	A	A	114211084	1	1	208	0	1	0	0	0	0	0	0	0	6087	1392	48	4		4	FOXP2	7	114211084	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	6226654	114211084	44927579	358	163700											
CFTR	1080	broad.mit.edu	37	chr7	117267576	117267576	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgttatttttatttcagAtgcgatctgtgagccgagtc	10	6	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117267576	T	T	117267576	3	4	208	1	0	0	0	0	1	0	0	0	3324	347	12	5	3555	5	CFTR	7	117267576	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	3056492	117267576	41871087	359	163701											
CTTNBP2	83992	broad.mit.edu	37	chr7	117400585	117400585	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagactccaccatccatcagAagagattgcctggaaatgat	8	11	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117400585	G	G	117400585	3	3	208	1	0	0	0	0	1	0	0	0	4079	246	9	5	1971	5	CTTNBP2	7	117400585	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	133009	117400585	41738078	360	163702											
ANKRD7	56311	broad.mit.edu	37	chr7	117874861	117874861	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcttcactatgctgtttGtggtcaaagtttgtcattag	9	6	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117874861	T	T	117874861	3	4	208	1	0	0	0	0	1	0	0	0	686	1377	48	3	411	3	ANKRD7	7	117874861	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	474276	117874861	41263802	361	163703											
GRM8	2918	broad.mit.edu	37	chr7	126086394	126086394	+	Frame_Shift_Del	DEL	G	-	-													actgaagcacttaaactcatGgagacagtaagtgttgttgt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126086394	-	-	126086394	7	5	208	1	0	1	0	1	0	0	0	0	6869	1335	47	0	321	0	GRM8	7	126086394	Frame_Shift_Del	DEL	G	TCGA-73-4670-01A-01D-1265-08	8211533	126086394	33052269	362	163704											
PAX4	5078	broad.mit.edu	37	chr7	127252046	127252046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtacagtcagcccctGggaagcacctataaaatgag	10	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127252046	T	T	127252046	3	4	208	1	0	0	0	0	1	0	0	0	11575	1357	47	2	343	2	PAX4	7	127252046	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1165652	127252046	31886617	363	163705											
FLNC	2318	broad.mit.edu	37	chr7	128492942	128492942	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgtgcgcaagagtggcaAgcatgtcaccaacagcccct	12	13	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128492942	C	C	128492942	3	2	208	1	0	0	0	0	1	0	0	0	5993	72	3	5	6211	5	FLNC	7	128492942	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	1240896	128492942	30645721	364	163706											
AHCYL2	23382	broad.mit.edu	37	chr7	129066148	129066148	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagaattgaggaccagtgaGcgaaggttgaacatttttca	11	5	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129066148	C	C	129066148	1	2	208	0	1	0	0	0	0	0	0	0	411	986	34	4		4	AHCYL2	7	129066148	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	573206	129066148	30072515	365	163707											
CPA1	1357	broad.mit.edu	37	chr7	130025219	130025219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcttgccccctcgtccCcaaggtggcttcggacaggc	12	17	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130025219	A	A	130025219	1	1	208	0	1	0	0	0	0	0	0	0	3821	638	22	2		2	CPA1	7	130025219	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	959071	130025219	29113444	366	163708											
LRGUK	136332	broad.mit.edu	37	chr7	133881687	133881687	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcaaatgatttgagttaTgtaaattccatgatggctgc	8	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133881687	C	C	133881687	1	2	208	0	1	0	0	0	0	0	0	0	9030	1479	51	5		5	LRGUK	7	133881687	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	3856468	133881687	25256976	367	163709											
DGKI	9162	broad.mit.edu	37	chr7	137363415	137363415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgcaaggaaaagaccCacctgacatcaatttttttt	5	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137363415	A	A	137363415	1	1	208	0	1	0	0	0	0	0	0	0	4511	609	21	2		2	DGKI	7	137363415	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3481728	137363415	21775248	368	163710											
ZNF398	57541	broad.mit.edu	37	chr7	148851053	148851053	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagacatctgaatgggactCcgagtgccttacatccctgc	10	13	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148851053	T	T	148851053	3	4	208	1	0	0	0	0	1	0	0	0	18012	855	30	4	47	4	ZNF398	7	148851053	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	11487638	148851053	10287610	369	163711											
SSPO	23145	broad.mit.edu	37	chr7	149489534	149489534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatctgccaagacggacGgccccgacgctgccgactca	11	17	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149489534	T	T	149489534	3	4	208	1	0	0	0	0	1	0	0	0	15307	1116	39	1	5829	1	SSPO	7	149489534	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	638481	149489534	9649129	370	163712											
ZNF862	643641	broad.mit.edu	37	chr7	149559129	149559129	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctggccaagtgggattgaActtgccagttttgggaatga	14	7	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149559129	T	T	149559129	3	4	208	1	0	0	0	0	1	0	0	0	18324	40	2	5	2906	5	ZNF862	7	149559129	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	69595	149559129	9579534	371	163713											
TMEM176A	55365	broad.mit.edu	37	chr7	150498674	150498674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgagatggccccggaGgccccacagcacacccacat	11	15	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150498674	T	T	150498674	3	4	208	1	0	0	0	0	1	0	0	0	16215	991	35	2	38	2	TMEM176A	7	150498674	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	939545	150498674	8639989	372	163714											
ABCB8	11194	broad.mit.edu	37	chr7	150731915	150731915	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcaagcttgtcatctcccAggtcagtggcccagtggccc	10	15	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150731915	T	T	150731915	3	4	208	1	0	0	0	0	1	0	0	0	47	202	7	5	782	5	ABCB8	7	150731915	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	233241	150731915	8406748	373	163715											
DPP6	1804	broad.mit.edu	37	chr7	154172096	154172096	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaagacttcaaaattcAtgaccccgaggctaagtgga	10	9	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154172096	T	T	154172096	3	4	208	1	0	0	0	0	1	0	0	0	4770	217	8	5	557	5	DPP6	7	154172096	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	3440181	154172096	4966567	374	163716											
UBE3C	9690	broad.mit.edu	37	chr7	157046907	157046907	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctttcttaaaatttacctCaaatgttattatttgaactt	4	6	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157046907	T	T	157046907	1	4	208	0	1	0	0	0	0	0	0	0	17007	841	29	4		4	UBE3C	7	157046907	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2874811	157046907	2091756	375	163717											
DEFB1	1672	broad.mit.edu	37	chr8	6735418	6735418	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggatttcaggaactggGgagacgctggctcctttgga	14	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6735418	T	T	6735418	1	4	208	0	1	0	0	0	0	0	0	0	4427	1247	43	2		2	DEFB1	8	6735418	5'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08		6735418	139628604	376	163718											
XPO7	23039	broad.mit.edu	37	chr8	21840351	21840351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttagcctcattcattccCgcaccagtggcctgttgtca	7	14	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21840351	A	A	21840351	1	1	208	0	1	0	0	0	0	0	0	0	17576	667	23	1		1	XPO7	8	21840351	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	15104933	21840351	124523671	377	163719											
HR	55806	broad.mit.edu	37	chr8	21984809	21984809	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgagtgccgtgtgagccaTgtcttcttcagcttggtgtg	13	10	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21984809	A	A	21984809	2	1	208	1	0	0	0	0	0	0	0	1	7414	1451	51	5		5	HR	8	21984809	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	144458	21984809	124379213	378	163720											
ASH2L	9070	broad.mit.edu	37	chr8	37968013	37968013	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaactctggagtatttgaaGatgattatccactggaaaag	9	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37968013	C	C	37968013	1	2	208	0	1	0	0	0	0	0	0	0	1046	957	33	4		4	ASH2L	8	37968013	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	15983204	37968013	108396009	379	163721											
C8orf86	389649	broad.mit.edu	37	chr8	38374079	38374079	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagccagtctgctggctgGagaactggagaattgtttat	12	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38374079	T	T	38374079	1	4	208	0	1	0	0	0	0	0	0	0	2468	1189	41	3		3	C8orf86	8	38374079	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	406066	38374079	107989943	380	163722											
SNTG1	54212	broad.mit.edu	37	chr8	51363265	51363265	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagataaatggcattaatgtGagaaaatgtagacatgaaga	10	3	0	5			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51363265	T	T	51363265	2	4	208	1	0	0	0	0	0	0	0	1	14988	1277	45	3		3	SNTG1	8	51363265	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	12989186	51363265	95000757	381	163723											
PXDNL	137902	broad.mit.edu	37	chr8	52252091	52252091	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttattattctgatactgTgctgtaattgtggagagtta	9	3	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52252091	A	A	52252091	1	1	208	0	1	0	0	0	0	0	0	0	12956	1711	59	5		5	PXDNL	8	52252091	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	888826	52252091	94111931	382	163724											
RB1CC1	9821	broad.mit.edu	37	chr8	53569771	53569771	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtcaagtttaccttcatatTcattttttaaagacagtagt	5	7	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53569771	A	A	53569771	3	1	208	1	0	0	0	0	1	0	0	0	13207	1783	62	5	2206	5	RB1CC1	8	53569771	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1317680	53569771	92794251	383	163725											
FAM110B	90362	broad.mit.edu	37	chr8	59059080	59059080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcactgggcagccccacGctcaaagtgttcggcaacca	11	16	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59059080	T	T	59059080	2	4	208	1	0	0	0	0	0	0	0	1	5443	1074	38	3		3	FAM110B	8	59059080	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	5489309	59059080	87304942	384	163726											
YTHDF3	253943	broad.mit.edu	37	chr8	64098921	64098921	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaggaaatacccctccaTttcttggtcaacatggattt	6	10	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64098921	C	C	64098921	3	2	208	1	0	0	0	0	1	0	0	0	17627	1490	52	5	365	5	YTHDF3	8	64098921	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	5039841	64098921	82265101	385	163727											
C8orf34	116328	broad.mit.edu	37	chr8	69445133	69445134	+	Intron	DEL	GT	-	-													ttagtaacatgtccacatacGtgtgtaataaaataaccaaa							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	69445134	-	-	69445133	6	5	208	0	1	1	0	1	0	0	0	0	2448	1160	40	0		0	C8orf34	8	69445133	Intron	DEL	GT	TCGA-73-4670-01A-01D-1265-08	5346212	69445133	76918889	386	163728											
ZFHX4	79776	broad.mit.edu	37	chr8	77620022	77620022	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaattggagatatctaccaGtgcaagctctgcaactacaa	8	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77620022	T	T	77620022	3	4	208	1	0	0	0	0	1	0	0	0	17761	1020	36	3	2838	3	ZFHX4	8	77620022	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	8174889	77620022	68744000	387	163729											
IL7	3574	broad.mit.edu	37	chr8	79674656	79674656	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagttggcggcagcgcagAagttcggcatcgtcgcccgc	15	13	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79674656	C	C	79674656	1	2	208	0	1	0	0	0	0	0	0	0	7774	261	9	5		5	IL7	8	79674656	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	2054634	79674656	66689366	388	163730											
ATP6V0D2	245972	broad.mit.edu	37	chr8	87126054	87126054	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagactatgtggagaatttGagtatttccggaatcattcc	9	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87126054	T	T	87126054	4	4	208	1	0	0	0	0	0	1	0	0	1178	1291	45	3	253	3	ATP6V0D2	8	87126054	Nonsense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	7451398	87126054	59237968	389	163731											
VPS13B	157680	broad.mit.edu	37	chr8	100515037	100515037	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaattgtgaagactgtgttGatattactgcttgtttctta	8	4	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100515037	T	T	100515037	1	4	208	0	1	0	0	0	0	0	0	0	17317	1305	45	3		3	VPS13B	8	100515037	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	13388983	100515037	45848985	390	163732											
SNX31	169166	broad.mit.edu	37	chr8	101629909	101629909	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctaatactctgttcattgGgcagaaatatgtccagataa	7	7	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101629909	C	C	101629909	3	2	208	1	0	0	0	0	1	0	0	0	15015	1232	43	4	991	4	SNX31	8	101629909	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1114872	101629909	44734113	391	163733											
PKHD1L1	93035	broad.mit.edu	37	chr8	110401229	110401229	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcatattctgaaattaatGagtagtttttaagagaaaca	6	3	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110401229	T	T	110401229	1	4	208	0	1	0	0	0	0	0	0	0	12067	1305	45	3		3	PKHD1L1	8	110401229	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	8771320	110401229	35962793	392	163734											
CSMD3	114788	broad.mit.edu	37	chr8	113303803	113303804	+	Nonsense_Mutation	DNP	AA	TT	TT													catatcaaaactgaagatccAaataaaaaatatccaggatt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	113303804	TT	TT	113303803	4	4	208	1	0	0	0	0	0	1	0	0	3980	127	5	5	2277	5	CSMD3	8	113303803	Nonsense_Mutation	DNP	AA	TCGA-73-4670-01A-01D-1265-08	2902574	113303803	33060219	393	163735											
CSMD3	114788	broad.mit.edu	37	chr8	113317142	113317142	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgatgcttggacatgtaaCaactatacaaaaaccaaagg	7	7	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113317142	T	T	113317142	3	4	208	1	0	0	0	0	1	0	0	0	3980	478	17	4	3129	4	CSMD3	8	113317142	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	13339	113317142	33046880	394	163736											
CSMD3	114788	broad.mit.edu	37	chr8	113347554	113347554	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggaactctcagataatacCaaccgtgataactgagcaca	7	10	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113347554	T	T	113347554	1	4	208	0	1	0	0	0	0	0	0	0	3980	609	21	4		4	CSMD3	8	113347554	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	30412	113347554	33016468	395	163737											
CSMD3	114788	broad.mit.edu	37	chr8	113421305	113421305	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaaacaaatcaccaaccatCcaaaaacgaaaacaaaaaac	2	12	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113421305	T	T	113421305	1	4	208	0	1	0	0	0	0	0	0	0	3980	870	30	4		4	CSMD3	8	113421305	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	73751	113421305	32942717	396	163738											
CSMD3	114788	broad.mit.edu	37	chr8	113504698	113504699	+	Intron	INS	-	AA	AA													tctaatcatgaaaattcagcINScaaaaaatatgttccttacc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	113504699	AA	AA	113504698	6	5	208	0	1	1	1	0	0	0	0	0	3980	754	26	0		0	CSMD3	8	113504698	Intron	INS	-	TCGA-73-4670-01A-01D-1265-08	83393	113504698	32859324	397	163739											
NOV	4856	broad.mit.edu	37	chr8	120430668	120430668	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttctggtcattcagttgTgggtttcaggttgcccactg	12	8	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120430668	C	C	120430668	1	2	208	0	1	0	0	0	0	0	0	0	10648	1711	59	5		5	NOV	8	120430668	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	6925970	120430668	25933354	398	163740											
COL14A1	7373	broad.mit.edu	37	chr8	121344837	121344837	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgttactcttgcttaaaAgttggctgtcattgatgaga	9	5	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121344837	C	C	121344837	1	2	208	0	1	0	0	0	0	0	0	0	3703	87	3	5		5	COL14A1	8	121344837	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	914169	121344837	25019185	399	163741											
COL14A1	7373	broad.mit.edu	37	chr8	121353608	121353608	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaggagagcgggtaagtatCctgtggctctgctttctggc	15	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121353608	T	T	121353608	1	4	208	0	1	0	0	0	0	0	0	0	3703	870	30	4		4	COL14A1	8	121353608	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	8771	121353608	25010414	400	163742											
MRPL13	28998	broad.mit.edu	37	chr8	121457313	121457313	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtccgagctcacctgggGcgccctagagaaactcgaca	12	13	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121457313	A	A	121457313	3	1	208	1	0	0	0	0	1	0	0	0	9872	1203	42	4	542	4	MRPL13	8	121457313	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	103705	121457313	24906709	401	163743											
FER1L6	654463	broad.mit.edu	37	chr8	125074284	125074285	+	Intron	DNP	GC	TT	TT													cctgggcacggtgagaagctGctcttagattttgtagctgt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	125074285	TT	TT	125074284	1	4	208	0	1	0	0	0	0	0	0	0	5872	1334	46	3		3	FER1L6	8	125074284	Intron	DNP	GC	TCGA-73-4670-01A-01D-1265-08	3616971	125074284	21289738	402	163744											
ASAP1	50807	broad.mit.edu	37	chr8	131073151	131073151	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttctcctggcttaggcgGcaaatctccaatttggggct	11	11	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131073151	A	A	131073151	3	1	208	1	0	0	0	0	1	0	0	0	1014	1203	42	4	535	4	ASAP1	8	131073151	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	5998867	131073151	15290871	403	163745											
TG	7038	broad.mit.edu	37	chr8	133984064	133984064	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgaatgtgaacgacggtgcGatgcggacccatgctgcact	13	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133984064	A	A	133984064	3	1	208	1	0	0	0	0	1	0	0	0	15936	1058	37	4	6131	4	TG	8	133984064	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2910913	133984064	12379958	404	163746											
COL22A1	169044	broad.mit.edu	37	chr8	139618608	139618608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtatcttgggccccactGgggttctctgcttaccggag	13	12	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139618608	T	T	139618608	1	4	208	0	1	0	0	0	0	0	0	0	3713	1363	47	2		2	COL22A1	8	139618608	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	5634544	139618608	6745414	405	163747											
COL22A1	169044	broad.mit.edu	37	chr8	139635992	139635992	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccggctctccagggggacCcggctttccatctctgccct	10	17	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139635992	A	A	139635992	3	1	208	1	0	0	0	0	1	0	0	0	3713	623	22	2	1182	2	COL22A1	8	139635992	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	17384	139635992	6728030	406	163748											
COL22A1	169044	broad.mit.edu	37	chr8	139815035	139815035	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattcagcccacacttgctGatttgcatgatcggagggcc	11	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139815035	A	A	139815035	1	1	208	0	1	0	0	0	0	0	0	0	3713	1305	45	4		4	COL22A1	8	139815035	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	179043	139815035	6548987	407	163749											
RHPN1	114822	broad.mit.edu	37	chr8	144459534	144459534	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccttacagtctgaagtcgAtgcttctggttacagcgaag	12	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144459534	G	G	144459534	1	3	208	0	1	0	0	0	0	0	0	0	13459	348	12	5		5	RHPN1	8	144459534	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	4644499	144459534	1904488	408	163750											
NFKBIL2	4796	broad.mit.edu	37	chr8	145656640	145656640	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagaagggagcagagtcCcccatcaagttggagatcgg	14	11	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145656640	A	A	145656640	1	1	208	0	1	0	0	0	0	0	0	0	10477	638	22	2		2	NFKBIL2	8	145656640	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1197106	145656640	707382	409	163751											
CYHR1	50626	broad.mit.edu	37	chr8	145689869	145689869	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaatcgaaggccagaagggGaaggccgatgacggtggcca	17	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145689869	A	A	145689869	3	1	208	1	0	0	0	0	1	0	0	0	4173	1174	41	4	1217	4	CYHR1	8	145689869	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	33229	145689869	674153	410	163752											
KANK1	23189	broad.mit.edu	37	chr9	744377	744377	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccagaagaccgaacgagtAgggatatttggggaaccttg	13	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	744377	T	T	744377	1	4	208	0	1	0	0	0	0	0	0	0	8046	435	15	5		5	KANK1	9	744377	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08		744377	140469054	411	163753											
UHRF2	115426	broad.mit.edu	37	chr9	6506175	6506175	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctggctacagcaaaggacGatgatctgcctgctttcact	9	13	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6506175	A	A	6506175	3	1	208	1	0	0	0	0	1	0	0	0	17096	1058	37	4	2467	4	UHRF2	9	6506175	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	5761798	6506175	134707256	412	163754											
IFNA10	3446	broad.mit.edu	37	chr9	21206911	21206911	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatcaaactcctcctgGgggattcggaaatcatgtct	9	11	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21206911	A	A	21206911	2	1	208	1	0	0	0	0	0	0	0	1	7602	1219	43	4		4	IFNA10	9	21206911	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	14700736	21206911	120006520	413	163755											
AQP7	364	broad.mit.edu	37	chr9	33395003	33395003	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatggacaatgtgacccatgGggtcagcatggggagggggt	18	6	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33395003	C	C	33395003	1	2	208	0	1	0	0	0	0	0	0	0	833	1247	43	4		4	AQP7	9	33395003	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	12188092	33395003	107818428	414	163756											
AQP3	360	broad.mit.edu	37	chr9	33443783	33443783	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagagacctggccagcgatGaggatgcccagagtgacagc	14	12	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33443783	T	T	33443783	2	4	208	1	0	0	0	0	0	0	0	1	829	1277	45	3		3	AQP3	9	33443783	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	48780	33443783	107769648	415	163757											
MELK	9833	broad.mit.edu	37	chr9	36633175	36633175	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagattacaactatcctgTtgagtggcaaagcaagaatc	9	8	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36633175	C	C	36633175	3	2	208	1	0	0	0	0	1	0	0	0	9563	1725	60	5	846	5	MELK	9	36633175	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	3189392	36633175	104580256	416	163758											
ZCCHC7	84186	broad.mit.edu	37	chr9	37126466	37126466	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcattatgcccaagatcttgAtgatgtcatcagggaggaag	11	7	4	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37126466	T	T	37126466	3	4	208	1	0	0	0	0	1	0	0	0	17719	333	12	5	139	5	ZCCHC7	9	37126466	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	493291	37126466	104086965	417	163759											
NTRK2	4915	broad.mit.edu	37	chr9	87635209	87635209	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacggaaagcgacgtctggaGcctgggggtcgtgttgtggg	20	7	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87635209	C	C	87635209	3	2	208	1	0	0	0	0	1	0	0	0	10802	971	34	4	2402	4	NTRK2	9	87635209	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	50508743	87635209	53578222	418	163760											
ROR2	4920	broad.mit.edu	37	chr9	94485906	94485906	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtccctgtggggtctcggCggggcttctatccccgaacc	14	14	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94485906	T	T	94485906	1	4	208	0	1	0	0	0	0	0	0	0	13638	783	27	4		4	ROR2	9	94485906	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	6850697	94485906	46727525	419	163761											
WNK2	65268	broad.mit.edu	37	chr9	96062229	96062229	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctagatggagccgtggatGttaagtgacgaggctggtgt	18	5	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96062229	A	A	96062229	1	1	208	0	1	0	0	0	0	0	0	0	17505	1392	48	4		4	WNK2	9	96062229	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1576323	96062229	45151202	420	163762											
SLC35D2	11046	broad.mit.edu	37	chr9	99083416	99083416	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcagatgctctcacttgCccagggggtggatgtcacga	13	10	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99083416	T	T	99083416	1	4	208	0	1	0	0	0	0	0	0	0	14696	754	26	4		4	SLC35D2	9	99083416	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	3021187	99083416	42130015	421	163763											
KIAA1529	57653	broad.mit.edu	37	chr9	100133895	100133895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaatgtaccagaaggaatGgccaggttttcataaccaac	10	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100133895	T	T	100133895	3	4	208	1	0	0	0	0	1	0	0	0	8310	1348	47	2	4612	2	KIAA1529	9	100133895	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1050479	100133895	41079536	422	163764											
MUSK	4593	broad.mit.edu	37	chr9	113459659	113459659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgaggattcataacgtaCaaaaggaagatgcaggacag	12	6	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113459659	A	A	113459659	3	1	208	1	0	0	0	0	1	0	0	0	10083	479	17	3	559	3	MUSK	9	113459659	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	13325764	113459659	27753772	423	163765											
TNC	3371	broad.mit.edu	37	chr9	117800392	117800392	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccttgaggtttcagttggGagccacatgaacattactgg	11	9	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117800392	T	T	117800392	1	4	208	0	1	0	0	0	0	0	0	0	16393	1189	41	3		3	TNC	9	117800392	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	4340733	117800392	23413039	424	163766											
ASTN2	23245	broad.mit.edu	37	chr9	119582987	119582987	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagccgccattaaagcCatcagagcagtcaatgcctt	7	14	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119582987	A	A	119582987	3	1	208	1	0	0	0	0	1	0	0	0	1069	594	21	2	2183	2	ASTN2	9	119582987	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1782595	119582987	21630444	425	163767											
PHF19	26147	broad.mit.edu	37	chr9	123624696	123624696	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaggtaataagggggctgtGgtggtgaaaggagttgggga	21	2	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123624696	A	A	123624696	1	1	208	0	1	0	0	0	0	0	0	0	11924	1363	47	4		4	PHF19	9	123624696	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	4041709	123624696	17588735	426	163768											
ASB6	140459	broad.mit.edu	37	chr9	132404236	132404236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcgcatccaccagcggctGgtactcgaagatgatcctcc	9	14	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132404236	T	T	132404236	3	4	208	1	0	0	0	0	1	0	0	0	1031	1357	47	2	1246	2	ASB6	9	132404236	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	8779540	132404236	8809195	427	163769											
POMT1	10585	broad.mit.edu	37	chr9	134381680	134381680	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacttatcagtgcatttcTtacaggcagaaaccaggtct	7	9	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134381680	G	G	134381680	1	3	208	0	1	0	0	0	0	0	0	0	12340	1624	56	5		5	POMT1	9	134381680	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1977444	134381680	6831751	428	163770											
C9orf86	55684	broad.mit.edu	37	chr9	139707073	139707073	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaacaaacaaggaaggtAttacccttgaaatgttgtct	7	7	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139707073	G	G	139707073	1	3	208	0	1	0	0	0	0	0	0	0	2528	464	16	5		5	C9orf86	9	139707073	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	5325393	139707073	1506358	429	163771											
SFMBT2	57713	broad.mit.edu	37	chr10	7214464	7214464	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcagaacatacctcccccGagcccgcggtgaagtccacg	12	16	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7214464	T	T	7214464	4	4	208	1	0	0	0	0	0	1	0	0	14271	1059	37	3	556	3	SFMBT2	10	7214464	Nonsense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08		7214464	128320283	430	163772											
FAM171A1	221061	broad.mit.edu	37	chr10	15254805	15254805	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtaaacgtccacgtccGtcccacggctgggctgccgt	12	15	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15254805	T	T	15254805	1	4	208	0	1	0	0	0	0	0	0	0	5535	1160	40	3		3	FAM171A1	10	15254805	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	8040341	15254805	120279942	431	163773											
CUBN	8029	broad.mit.edu	37	chr10	16948341	16948341	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaggtttcttgagtaattCctgactccgtcatagccagg	9	10	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16948341	T	T	16948341	2	4	208	1	0	0	0	0	0	0	0	1	4084	854	30	4		4	CUBN	10	16948341	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	1693536	16948341	118586406	432	163774											
CACNB2	783	broad.mit.edu	37	chr10	18789651	18789651	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcatagttaatggtcattGccatatttctctcgactgaa	8	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18789651	T	T	18789651	1	4	208	0	1	0	0	0	0	0	0	0	2579	1334	46	3		3	CACNB2	10	18789651	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1841310	18789651	116745096	433	163775											
NEBL	10529	broad.mit.edu	37	chr10	21176970	21176970	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaaaacgctaagtagcttTtttccagttatatgttttat	5	5	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21176970	C	C	21176970	1	2	208	0	1	0	0	0	0	0	0	0	10398	1856	64	5		5	NEBL	10	21176970	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2387319	21176970	114357777	434	163776											
SVIL	6840	broad.mit.edu	37	chr10	29821031	29821031	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatagcgtcttggtttccGggaccctctctcccgttcca	8	14	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29821031	A	A	29821031	3	1	208	1	0	0	0	0	1	0	0	0	15539	1115	39	4	4855	4	SVIL	10	29821031	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	8644061	29821031	105713716	435	163777											
ZNF438	220929	broad.mit.edu	37	chr10	31137436	31137436	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaacagactctcttgccaGgtctccattacattggcact	6	13	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31137436	T	T	31137436	1	4	208	0	1	0	0	0	0	0	0	0	18037	1015	35	2		2	ZNF438	10	31137436	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1316405	31137436	104397311	436	163778											
RET	5979	broad.mit.edu	37	chr10	43606770	43606770	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtcacctcagccgaggAcacctcggggatcctgtttg	14	12	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43606770	T	T	43606770	3	4	208	1	0	0	0	0	1	0	0	0	13343	275	10	5	1405	5	RET	10	43606770	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	12469334	43606770	91927977	437	163779											
PRKG1	5592	broad.mit.edu	37	chr10	53814147	53814147	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttggataaaattccattagGatgaatatatccctgggggt	10	6	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53814147	C	C	53814147	1	2	208	0	1	0	0	0	0	0	0	0	12628	1189	41	4		4	PRKG1	10	53814147	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	10207377	53814147	81720600	438	163780											
ANK3	288	broad.mit.edu	37	chr10	61830708	61830708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatcactgacgtctgcccCgggaggaactggtgaaggtg	15	9	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61830708	A	A	61830708	3	1	208	1	0	0	0	0	1	0	0	0	622	652	23	1	3543	1	ANK3	10	61830708	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	8016561	61830708	73704039	439	163781											
REEP3	221035	broad.mit.edu	37	chr10	65357914	65357914	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaggaaagggtaagatatAtaaattacttccgtaaataa	7	4	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65357914	G	G	65357914	1	3	208	0	1	0	0	0	0	0	0	0	13314	464	16	5		5	REEP3	10	65357914	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	3527206	65357914	70176833	440	163782											
RUFY2	55680	broad.mit.edu	37	chr10	70154113	70154113	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaatcctctcccttcacaCacagattagcatcgatcaca	3	15	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70154113	T	T	70154113	3	4	208	1	0	0	0	0	1	0	0	0	13850	478	17	4	1495	4	RUFY2	10	70154113	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	4796199	70154113	65380634	441	163783											
HK1	3098	broad.mit.edu	37	chr10	71142369	71142369	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtggcctaccgcttggcCgagcagcaccggcagataga	15	13	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71142369	T	T	71142369	2	4	208	1	0	0	0	0	0	0	0	1	7257	639	23	4		4	HK1	10	71142369	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	988256	71142369	64392378	442	163784											
KIAA1274	27143	broad.mit.edu	37	chr10	72298677	72298677	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctggtctccccggacgcGctcagcactgtcagagagat	12	13	4	2	rs145017915		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72298677	T	T	72298677	2	4	208	1	0	0	0	0	0	0	0	1	8290	1074	38	3		3	KIAA1274	10	72298677	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	1156308	72298677	63236070	443	163785											
ADAMTS14	140766	broad.mit.edu	37	chr10	72492163	72492163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggcagctgtgccgtgagCtccagggaattctgtggctg	15	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72492163	A	A	72492163	1	1	208	0	1	0	0	0	0	0	0	0	259	812	28	3		3	ADAMTS14	10	72492163	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	193486	72492163	63042584	444	163786											
CDH23	64072	broad.mit.edu	37	chr10	73464797	73464797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaccaccgagctggacCgcgagcgcatcgcggagtac	12	16	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73464797	A	A	73464797	3	1	208	1	0	0	0	0	1	0	0	0	3138	652	23	1	3184	1	CDH23	10	73464797	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	972634	73464797	62069950	445	163787											
CDH23	64072	broad.mit.edu	37	chr10	73553131	73553131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacggtggtggccaccgaccGgggcaccgttcctctctcgg	14	15	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73553131	T	T	73553131	3	4	208	1	0	0	0	0	1	0	0	0	3138	1116	39	1	6977	1	CDH23	10	73553131	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	88334	73553131	61981616	446	163788											
CBARA1	10367	broad.mit.edu	37	chr10	74128145	74128145	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaaaacaacagggataaGtgttggccttggaacaacac	11	8	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74128145	A	A	74128145	1	1	208	0	1	0	0	0	0	0	0	0	2722	1044	36	4		4	CBARA1	10	74128145	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	575014	74128145	61406602	447	163789											
KCNMA1	3778	broad.mit.edu	37	chr10	78713662	78713662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaatctgatcattgccaGgaattaacaaggggtcatgc	10	8	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78713662	T	T	78713662	3	4	208	1	0	0	0	0	1	0	0	0	8143	1000	35	2	1517	2	KCNMA1	10	78713662	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4585517	78713662	56821085	448	163790											
POLR3A	11128	broad.mit.edu	37	chr10	79784817	79784817	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcgcttctgaaggtaggtCaggccgggcctctttagata	12	11	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79784817	A	A	79784817	2	1	208	1	0	0	0	0	0	0	0	1	12323	813	29	3		3	POLR3A	10	79784817	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	1071155	79784817	55749930	449	163791											
LDB3	11155	broad.mit.edu	37	chr10	88446742	88446742	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacccaccgcgcccagccCttgccttggccacccatgta	8	20	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88446742	A	A	88446742	1	1	208	0	1	0	0	0	0	0	0	0	8769	696	24	2		2	LDB3	10	88446742	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	8661925	88446742	47088005	450	163792											
LIPF	8513	broad.mit.edu	37	chr10	90433627	90433627	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataaacatgagagaaatcAcaaatcattgctcccaattt	5	8	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90433627	G	G	90433627	1	3	208	0	1	0	0	0	0	0	0	0	8895	174	6	5		5	LIPF	10	90433627	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1986885	90433627	45101120	451	163793											
ANKRD1	27063	broad.mit.edu	37	chr10	92676117	92676117	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatccgtgaaaataatgaGttgtccccatctagattgac	9	9	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92676117	T	T	92676117	1	4	208	0	1	0	0	0	0	0	0	0	637	1044	36	3		3	ANKRD1	10	92676117	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2242490	92676117	42858630	452	163794											
EXOC6	54536	broad.mit.edu	37	chr10	94594583	94594583	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgaagctactttaaggTagggcaccgttgcattttat	10	7	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94594583	C	C	94594583	5	2	208	1	0	0	0	0	0	0	1	0	5350	1652	57	5	90	5	EXOC6	10	94594583	Splice_Site	SNP	T	TCGA-73-4670-01A-01D-1265-08	1918466	94594583	40940164	453	163795											
TLL2	7093	broad.mit.edu	37	chr10	98192886	98192886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtggcagttttccagatGgggtaagagtacatgtagta	15	4	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98192886	T	T	98192886	1	4	208	0	1	0	0	0	0	0	0	0	16069	1363	47	2		2	TLL2	10	98192886	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3598303	98192886	37341861	454	163796											
C10orf12	26148	broad.mit.edu	37	chr10	98741350	98741350	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccaaaaacacctttgcGccaggatttagaggcaaatg	10	9	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98741350	T	T	98741350	3	4	208	1	0	0	0	0	1	0	0	0	1600	1087	38	3	205	3	C10orf12	10	98741350	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	548464	98741350	36793397	455	163797											
RRP12	23223	broad.mit.edu	37	chr10	99131972	99131972	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggggagctggagaagggCgcagactaccagtgttctta	16	7	1	2	rs139233987	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99131972	A	A	99131972	1	1	208	0	1	0	0	0	0	0	0	0	13797	783	27	3		3	RRP12	10	99131972	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	390622	99131972	36402775	456	163798											
MMS19	64210	broad.mit.edu	37	chr10	99258111	99258111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatagggcacccataggcgCcgccgcctccacagccgcgg	12	19	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99258111	A	A	99258111	3	1	208	1	0	0	0	0	1	0	0	0	9766	739	26	3	3185	3	MMS19	10	99258111	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	126139	99258111	36276636	457	163799											
HPSE2	60495	broad.mit.edu	37	chr10	100401839	100401839	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctaaaaggttttgaaccTgggtacttttcaaacaaata	6	6	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100401839	A	A	100401839	1	1	208	0	1	0	0	0	0	0	0	0	7412	1595	55	5		5	HPSE2	10	100401839	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1143728	100401839	35132908	458	163800											
ENTPD7	57089	broad.mit.edu	37	chr10	101460489	101460489	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatttgttagtcctaacctCagcccctctgaagcctaaga	6	13	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101460489	T	T	101460489	1	4	208	0	1	0	0	0	0	0	0	0	5186	841	29	4		4	ENTPD7	10	101460489	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1058650	101460489	34074258	459	163801											
BTRC	8945	broad.mit.edu	37	chr10	103281468	103281468	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctcagcaagctatgaaaagGaaaaggaactgtgtgtcaaa	10	6	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103281468	A	A	103281468	3	1	208	1	0	0	0	0	1	0	0	0	1579	1175	41	4	415	4	BTRC	10	103281468	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1820979	103281468	32253279	460	163802											
KCNIP2	30819	broad.mit.edu	37	chr10	103587002	103587002	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttggatccctccagccccCagggaggcgtaggatgagga	14	12	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103587002	T	T	103587002	1	4	208	0	1	0	0	0	0	0	0	0	8110	609	21	4		4	KCNIP2	10	103587002	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	305534	103587002	31947745	461	163803											
LDB1	8861	broad.mit.edu	37	chr10	103871402	103871402	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcacaggaggtcgaggcTgcagggaccagcctaggcaa	16	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103871402	G	G	103871402	1	3	208	0	1	0	0	0	0	0	0	0	8767	1595	55	5		5	LDB1	10	103871402	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	284400	103871402	31663345	462	163804											
NFKB2	4791	broad.mit.edu	37	chr10	104157747	104157747	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactccatagaatctccggGggcatcaaacctgaagattt	8	12	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104157747	A	A	104157747	3	1	208	1	0	0	0	0	1	0	0	0	10471	1232	43	4	701	4	NFKB2	10	104157747	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	286345	104157747	31377000	463	163805											
SORCS3	22986	broad.mit.edu	37	chr10	106916929	106916929	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggatatttctggcaaacAagaaggtggacgaccaggtg	14	6	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106916929	T	T	106916929	4	4	208	1	0	0	0	0	0	1	0	0	15046	131	5	5	1554	5	SORCS3	10	106916929	Nonsense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	2759182	106916929	28617818	464	163806											
SORCS3	22986	broad.mit.edu	37	chr10	106924210	106924210	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctctctctccatcctatAgattctcagcctcattatga	3	13	4	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106924210	G	G	106924210	1	3	208	0	1	0	0	0	0	0	0	0	15046	435	15	5		5	SORCS3	10	106924210	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	7281	106924210	28610537	465	163807											
XPNPEP1	7511	broad.mit.edu	37	chr10	111637936	111637936	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttcatcccaactgaccaaTctacaggacacatctttagc	5	14	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111637936	A	A	111637936	1	1	208	0	1	0	0	0	0	0	0	0	17569	1450	50	5		5	XPNPEP1	10	111637936	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	4713726	111637936	23896811	466	163808											
NHLRC2	374354	broad.mit.edu	37	chr10	115636690	115636690	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacactggacatcatagaAttttggtcgtttggaagaat	10	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115636690	G	G	115636690	3	3	208	1	0	0	0	0	1	0	0	0	10501	101	4	5	752	5	NHLRC2	10	115636690	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	3998754	115636690	19898057	467	163809											
VWA2	340706	broad.mit.edu	37	chr10	116038542	116038542	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtccgggagttcgctggCaatgccccatgctggagagg	16	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116038542	T	T	116038542	2	4	208	1	0	0	0	0	0	0	0	1	17366	697	25	4		4	VWA2	10	116038542	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	401852	116038542	19496205	468	163810											
AFAP1L2	84632	broad.mit.edu	37	chr10	116058954	116058954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgacagccagatcttccGccaaaaagttaagcctacac	8	12	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116058954	T	T	116058954	1	4	208	0	1	0	0	0	0	0	0	0	355	1102	38	3		3	AFAP1L2	10	116058954	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	20412	116058954	19475793	469	163811											
EIF3A	8661	broad.mit.edu	37	chr10	120801569	120801569	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accccgtctgggaaaccgatCatcatcagcacgtcttgaaa	8	13	5	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120801569	T	T	120801569	3	4	208	1	0	0	0	0	1	0	0	0	5052	826	29	4	701	4	EIF3A	10	120801569	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	4742615	120801569	14733178	470	163812											
PRDX3	10935	broad.mit.edu	37	chr10	120932011	120932011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccattctaatcaaaatgcAaacatgactgttagaatgtg	6	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120932011	T	T	120932011	1	4	208	0	1	0	0	0	0	0	0	0	12572	145	5	5		5	PRDX3	10	120932011	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	130442	120932011	14602736	471	163813											
DMBT1	1755	broad.mit.edu	37	chr10	124344716	124344716	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgatgctcgccttctcCggagacttttccttttggag	9	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124344716	T	T	124344716	1	4	208	0	1	0	0	0	0	0	0	0	4617	667	23	4		4	DMBT1	10	124344716	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3412705	124344716	11190031	472	163814											
EBF3	253738	broad.mit.edu	37	chr10	131671761	131671761	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accttctgacgggtctaggcGgcgggcccgcctcccgtgtt	14	15	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131671761	A	A	131671761	3	1	208	1	0	0	0	0	1	0	0	0	4922	1116	39	4	955	4	EBF3	10	131671761	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	7327045	131671761	3862986	473	163815											
ATHL1	80162	broad.mit.edu	37	chr11	294777	294777	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggtggcttcagagacgtctCttgggccttccctctggcca	12	14	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	294777	T	T	294777	1	4	208	0	1	0	0	0	0	0	0	0	1108	928	32	4		4	ATHL1	11	294777	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08		294777	134711739	474	163816											
DEAF1	10522	broad.mit.edu	37	chr11	678763	678763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagctgtcctgatagcCggggtagtgaggctcagggt	17	9	1	2	rs138447102	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	678763	A	A	678763	3	1	208	1	0	0	0	0	1	0	0	0	4413	652	23	1	527	1	DEAF1	11	678763	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	383986	678763	134327753	475	163817											
EPS8L2	64787	broad.mit.edu	37	chr11	720164	720164	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggagaagatctggaccCaggagatgctgctgcaggtg	15	9	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	720164	T	T	720164	4	4	208	1	0	0	0	0	0	1	0	0	5238	595	21	4	282	4	EPS8L2	11	720164	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	41401	720164	134286352	476	163818											
MUC6	4588	broad.mit.edu	37	chr11	1016743	1016743	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgatgactgtgtgagtacTtggagtcaccaaggaggtgg	16	5	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1016743	G	G	1016743	3	3	208	1	0	0	0	0	1	0	0	0	10074	1609	56	5	1273	5	MUC6	11	1016743	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	296579	1016743	133989773	477	163819											
APBB1	322	broad.mit.edu	37	chr11	6422207	6422207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcccctgggtatagaaGgacacacataccaacaggtt	10	11	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6422207	T	T	6422207	1	4	208	0	1	0	0	0	0	0	0	0	761	1015	35	2		2	APBB1	11	6422207	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	5405464	6422207	128584309	478	163820											
ARFIP2	23647	broad.mit.edu	37	chr11	6498240	6498240	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccagaaaaaggagcccaaGccagagggcaagtgacaaag	13	9	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6498240	C	C	6498240	1	2	208	0	1	0	0	0	0	0	0	0	857	986	34	4		4	ARFIP2	11	6498240	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	76033	6498240	128508276	479	163821											
DENND5A	23258	broad.mit.edu	37	chr11	9174082	9174082	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcttttgctaaaaaaataTatgtactgtttcttgtttca	5	5	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9174082	A	A	9174082	1	1	208	0	1	0	0	0	0	0	0	0	4476	1421	49	5		5	DENND5A	11	9174082	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	2675842	9174082	125832434	480	163822											
CALCB	797	broad.mit.edu	37	chr11	15098690	15098690	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagactgccaggccatttcCcctaacagctttgataattg	8	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15098690	G	G	15098690	1	3	208	0	1	0	0	0	0	0	0	0	2602	638	22	4		4	CALCB	11	15098690	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	5924608	15098690	119907826	481	163823											
PTPN5	84867	broad.mit.edu	37	chr11	18763817	18763817	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccctcccacctctcctgCagacccatggacttgacggt	7	19	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18763817	A	A	18763817	2	1	208	1	0	0	0	0	0	0	0	1	12899	697	25	3		3	PTPN5	11	18763817	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	3665127	18763817	116242699	482	163824											
NELL1	4745	broad.mit.edu	37	chr11	21581884	21581884	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgaagcacaatggccagGtgtggaccttgaaagaagac	14	8	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21581884	C	C	21581884	3	2	208	1	0	0	0	0	1	0	0	0	10428	1261	44	4	2002	4	NELL1	11	21581884	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2818067	21581884	113424632	483	163825											
ANO5	203859	broad.mit.edu	37	chr11	22257942	22257942	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcatggtgggaaaatccCcaaagacttcttggttctga	9	10	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22257942	A	A	22257942	1	1	208	0	1	0	0	0	0	0	0	0	700	638	22	2		2	ANO5	11	22257942	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	676058	22257942	112748574	484	163826											
PHF21A	51317	broad.mit.edu	37	chr11	45959700	45959700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcccctgttggacccaccCacagtacctggtcctgacat	7	18	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45959700	A	A	45959700	1	1	208	0	1	0	0	0	0	0	0	0	11928	609	21	2		2	PHF21A	11	45959700	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	23701758	45959700	89046816	485	163827											
OR4A5	81318	broad.mit.edu	37	chr11	51412242	51412242	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacattggggaacccaaggAagggctggcaataatatcca	11	8	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51412242	G	G	51412242	3	3	208	1	0	0	0	0	1	0	0	0	11137	246	9	5	797	5	OR4A5	11	51412242	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	5452542	51412242	83594274	486	163828											
OR4C46	119749	broad.mit.edu	37	chr11	51515941	51515941	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctatgtggtcatcttGtgctccctaaggactcatag	9	11	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51515941	C	C	51515941	3	2	208	1	0	0	0	0	1	0	0	0	11145	1368	48	4	662	4	OR4C46	11	51515941	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	103699	51515941	83490575	487	163829											
OR4C16	219428	broad.mit.edu	37	chr11	55339545	55339546	+	5'Flank	INS	-	T	T													gcacagcataaattaattccINSttttttttttgcaggtagac							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55339546	T	T	55339545	6	5	208	0	1	1	1	0	0	0	0	0	11143	696	24	0		0	OR4C16	11	55339545	5'Flank	INS	-	TCGA-73-4670-01A-01D-1265-08	3823604	55339545	79666971	488	163830											
OR5L1	219437	broad.mit.edu	37	chr11	55579099	55579099	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcactgattcaggtcagcTctcggctccacacccccatg	8	16	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55579099	A	A	55579099	3	1	208	1	0	0	0	0	1	0	0	0	11264	1551	54	5	159	5	OR5L1	11	55579099	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	239554	55579099	79427417	489	163831											
OR1S1	219959	broad.mit.edu	37	chr11	57982931	57982931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcatcatcagagctgtcCtgagagtatcttccacacag	8	12	4	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57982931	A	A	57982931	3	1	208	1	0	0	0	0	1	0	0	0	11066	680	24	2	717	2	OR1S1	11	57982931	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	2403832	57982931	77023585	490	163832											
MS4A3	932	broad.mit.edu	37	chr11	59828952	59828952	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaacccctgctctccctcTtcttcctcagtctattcaac	2	18	6	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59828952	G	G	59828952	1	3	208	0	1	0	0	0	0	0	0	0	9955	1624	56	5		5	MS4A3	11	59828952	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1846021	59828952	75177564	491	163833											
MS4A6A	64231	broad.mit.edu	37	chr11	59949015	59949015	+	Intron	DEL	C	-	-													tatatcatctcttggcacttCccccaacccctctccaacac							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59949015	-	-	59949015	6	5	208	0	1	1	0	1	0	0	0	0	9958	870	30	0		0	MS4A6A	11	59949015	Intron	DEL	C	TCGA-73-4670-01A-01D-1265-08	120063	59949015	75057501	492	163834											
VWCE	220001	broad.mit.edu	37	chr11	61036367	61036367	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgagatgccctgccctggGggcttggggcagaggcaggg	19	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61036367	A	A	61036367	1	1	208	0	1	0	0	0	0	0	0	0	17372	1247	43	4		4	VWCE	11	61036367	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1087352	61036367	73970149	493	163835											
VWCE	220001	broad.mit.edu	37	chr11	61042021	61042021	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccactgaacacagcccCgtctgcgtaccaccggccgt	8	20	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61042021	A	A	61042021	3	1	208	1	0	0	0	0	1	0	0	0	17372	652	23	1	1372	1	VWCE	11	61042021	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	5654	61042021	73964495	494	163836											
DDB1	1642	broad.mit.edu	37	chr11	61084007	61084007	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caccaaagtgtcatcagtctCacgattagggtcagaccgca	9	12	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61084007	A	A	61084007	4	1	208	1	0	0	0	0	0	1	0	0	4356	835	29	3	2232	3	DDB1	11	61084007	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	41986	61084007	73922509	495	163837											
DDB1	1642	broad.mit.edu	37	chr11	61096852	61096852	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctggtagacaaagcaaaTagtaggtgcttggcaaccat	10	8	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61096852	C	C	61096852	3	2	208	1	0	0	0	0	1	0	0	0	4356	1406	49	5	2986	5	DDB1	11	61096852	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	12845	61096852	73909664	496	163838											
DDB1	1642	broad.mit.edu	37	chr11	61099118	61099118	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catagatctctaatctcgtgTttttggcaatcaacaggttt	7	8	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61099118	G	G	61099118	3	3	208	1	0	0	0	0	1	0	0	0	4356	1725	60	5	3419	5	DDB1	11	61099118	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	2266	61099118	73907398	497	163839											
SLC22A9	114571	broad.mit.edu	37	chr11	63177395	63177395	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agggaacaatcaggactattCctagacactagcaaaatcta	7	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63177395	A	A	63177395	1	1	208	0	1	0	0	0	0	0	0	0	14575	870	30	3		3	SLC22A9	11	63177395	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	2078277	63177395	71829121	498	163840											
C11orf84	144097	broad.mit.edu	37	chr11	63586356	63586356	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgacggcagcttccccgcCggcttcgtcttgcagctctt	10	16	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63586356	A	A	63586356	2	1	208	1	0	0	0	0	0	0	0	1	1679	639	23	1		1	C11orf84	11	63586356	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	408961	63586356	71420160	499	163841											
BRMS1	25855	broad.mit.edu	37	chr11	66106350	66106350	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgggggtacagcggacagCatggagtgggagctgaggac	20	6	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66106350	A	A	66106350	1	1	208	0	1	0	0	0	0	0	0	0	1525	725	25	3		3	BRMS1	11	66106350	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2519994	66106350	68900166	500	163842											
KDM2A	22992	broad.mit.edu	37	chr11	66975183	66975183	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtaatcattttcttcatAttgtcattgtcaccaaaagg	6	7	5	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66975183	G	G	66975183	1	3	208	0	1	0	0	0	0	0	0	0	8194	464	16	5		5	KDM2A	11	66975183	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	868833	66975183	68031333	501	163843											
TBC1D10C	374403	broad.mit.edu	37	chr11	67173330	67173330	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccccagagggtggagaagGgggtgcctgcaggactggcc	19	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67173330	C	C	67173330	1	2	208	0	1	0	0	0	0	0	0	0	15719	1247	43	4		4	TBC1D10C	11	67173330	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	198147	67173330	67833186	502	163844											
TCIRG1	10312	broad.mit.edu	37	chr11	67818087	67818087	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accgtggctatcctgctggtGatggagggactctcagcctt	13	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67818087	A	A	67818087	2	1	208	1	0	0	0	0	0	0	0	1	15825	1277	45	4		4	TCIRG1	11	67818087	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	644757	67818087	67188429	503	163845											
KRTAP5-11	440051	broad.mit.edu	37	chr11	71293931	71293931	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtagaggagcaggtgagaggGaggtgcaggtgtggagcccc	21	6	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71293931	T	T	71293931	1	4	208	0	1	0	0	0	0	0	0	0	8632	1189	41	3		3	KRTAP5-11	11	71293931	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	3475844	71293931	63712585	504	163846											
ALG8	79053	broad.mit.edu	37	chr11	77817957	77817957	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcggagaaagcctctgggCccttggggtttaaaccaaag	12	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77817957	A	A	77817957	2	1	208	1	0	0	0	0	0	0	0	1	523	726	26	3		3	ALG8	11	77817957	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	6524026	77817957	57188559	505	163847											
USP35	57558	broad.mit.edu	37	chr11	77921420	77921420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctgccactggctggtgGccgtggccaggcctatgacc	14	16	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77921420	T	T	77921420	3	4	208	1	0	0	0	0	1	0	0	0	17193	1203	42	3	2553	3	USP35	11	77921420	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	103463	77921420	57085096	506	163848											
DLG2	1740	broad.mit.edu	37	chr11	83691443	83691443	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgccattttaagccacccAccctgtggtattttgtgatg	8	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83691443	C	C	83691443	1	2	208	0	1	0	0	0	0	0	0	0	4595	174	6	5		5	DLG2	11	83691443	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	5770023	83691443	51315073	507	163849											
FOLH1B	219595	broad.mit.edu	37	chr11	89402666	89402666	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctttactggaaacttttcTacacagttaagagactattt	7	7	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89402666	C	C	89402666	2	2	208	1	0	0	0	0	0	0	0	1	6038	1509	53	5		5	FOLH1B	11	89402666	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	5711223	89402666	45603850	508	163850											
FAT3	120114	broad.mit.edu	37	chr11	92086457	92086457	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaattttcccctcctggtgtCgtggttgctatagtaaaatt	9	8	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92086457	T	T	92086457	2	4	208	1	0	0	0	0	0	0	0	1	5748	871	31	4		4	FAT3	11	92086457	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	2683791	92086457	42920059	509	163851											
KDM4D	55693	broad.mit.edu	37	chr11	94731653	94731653	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccaggagagcagcgctgGgcctgagacaactcccttcc	11	15	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94731653	T	T	94731653	3	4	208	1	0	0	0	0	1	0	0	0	8201	1232	43	2	1119	2	KDM4D	11	94731653	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2645196	94731653	40274863	510	163852											
BIRC2	329	broad.mit.edu	37	chr11	102221497	102221497	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtaagaagcaaataacTatacattttatcattttatt	6	4	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102221497	C	C	102221497	1	2	208	0	1	0	0	0	0	0	0	0	1441	1537	53	5		5	BIRC2	11	102221497	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	7489844	102221497	32785019	511	163853											
C11orf52	91894	broad.mit.edu	37	chr11	111789750	111789750	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtaggctggaagggcaaAggggaacatctatctctgtt	14	6	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111789750	G	G	111789750	1	3	208	0	1	0	0	0	0	0	0	0	1659	87	3	5		5	C11orf52	11	111789750	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	9568253	111789750	23216766	512	163854											
C11orf57	55216	broad.mit.edu	37	chr11	111951114	111951114	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcttttacatctaaaagttCttctgctttctcttttagcc	4	10	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111951114	T	T	111951114	1	4	208	0	1	0	0	0	0	0	0	0	1662	928	32	4		4	C11orf57	11	111951114	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	161364	111951114	23055402	513	163855											
TMPRSS5	80975	broad.mit.edu	37	chr11	113567948	113567948	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtagaggtctccaattcCcatcccacaccagccaggcc	8	17	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113567948	A	A	113567948	1	1	208	0	1	0	0	0	0	0	0	0	16373	638	22	2		2	TMPRSS5	11	113567948	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1616834	113567948	21438568	514	163856											
UBE4A	9354	broad.mit.edu	37	chr11	118244006	118244006	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagatatggcaaaggtAggtctgaaagatgatatgta	11	3	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118244006	T	T	118244006	1	4	208	0	1	0	0	0	0	0	0	0	17008	435	15	5		5	UBE4A	11	118244006	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	4676058	118244006	16762510	515	163857											
THY1	7070	broad.mit.edu	37	chr11	119290115	119290115	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctccatgggccccacCagtcacagggacatgaaatc	9	15	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119290115	A	A	119290115	1	1	208	0	1	0	0	0	0	0	0	0	16008	609	21	2		2	THY1	11	119290115	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	1046109	119290115	15716401	516	163858											
SORL1	6653	broad.mit.edu	37	chr11	121340896	121340896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcccttttctggtccactGggattatcatactggaaaaa	8	9	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121340896	T	T	121340896	1	4	208	0	1	0	0	0	0	0	0	0	15048	1363	47	2		2	SORL1	11	121340896	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2050781	121340896	13665620	517	163859											
GRAMD1B	57476	broad.mit.edu	37	chr11	123396937	123396937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcttcagccctgtgctcGccccagcaccctcaagaggt	8	17	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123396937	T	T	123396937	1	4	208	0	1	0	0	0	0	0	0	0	6814	1102	38	3		3	GRAMD1B	11	123396937	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2056041	123396937	11609579	518	163860											
ROBO4	54538	broad.mit.edu	37	chr11	124757235	124757235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctcccagccctgcttccCgaccccatgccctcttactg	5	21	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124757235	A	A	124757235	1	1	208	0	1	0	0	0	0	0	0	0	13627	667	23	1		1	ROBO4	11	124757235	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1360298	124757235	10249281	519	163861											
SLC37A2	219855	broad.mit.edu	37	chr11	124946670	124946670	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggttccgaggcctcatccTgctgctgaccttcctaattt	8	14	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124946670	A	A	124946670	3	1	208	1	0	0	0	0	1	0	0	0	14712	1580	55	5	83	5	SLC37A2	11	124946670	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	189435	124946670	10059846	520	163862											
FAM118B	79607	broad.mit.edu	37	chr11	126126820	126126820	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtgtatttgtgatgtgAtgggcaaaatagttgccaag	12	3	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126126820	G	G	126126820	1	3	208	0	1	0	0	0	0	0	0	0	5458	348	12	5		5	FAM118B	11	126126820	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1180150	126126820	8879696	521	163863											
ETS1	2113	broad.mit.edu	37	chr11	128391816	128391816	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgccactcacccggggagGggaaaagctccagatcgact	13	13	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128391816	A	A	128391816	3	1	208	1	0	0	0	0	1	0	0	0	5317	1232	43	4	1283	4	ETS1	11	128391816	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2264996	128391816	6614700	522	163864											
NTM	50863	broad.mit.edu	37	chr11	131781262	131781262	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcgcctcccggtcgccgCgggttcaccgctcagtcccc	11	22	2	0	rs112538778		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131781262	A	A	131781262	1	1	208	0	1	0	0	0	0	0	0	0	10794	783	27	3		3	NTM	11	131781262	5'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	3389446	131781262	3225254	523	163865											
KCNA5	3741	broad.mit.edu	37	chr12	5155014	5155014	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatccttctgcaaggctggGgggaccctggagaatgcaga	16	9	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5155014	T	T	5155014	2	4	208	1	0	0	0	0	0	0	0	1	8076	1219	43	2		2	KCNA5	12	5155014	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08		5155014	128696881	524	163866											
IFFO1	25900	broad.mit.edu	37	chr12	6660037	6660037	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggagggacagggagaCggcagcagggtcatgggcag	20	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6660037	T	T	6660037	1	4	208	0	1	0	0	0	0	0	0	0	7580	551	19	4		4	IFFO1	12	6660037	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1505023	6660037	127191858	525	163867											
MLF2	8079	broad.mit.edu	37	chr12	6859920	6859920	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatcccaaacatgtccaTgaaaccacccgactggagga	7	14	1	1	rs61731916	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6859920	C	C	6859920	3	2	208	1	0	0	0	0	1	0	0	0	9709	1464	51	5	533	5	MLF2	12	6859920	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	199883	6859920	126991975	526	163868											
AICDA	57379	broad.mit.edu	37	chr12	8756972	8756972	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaaattgagtgaatggcttCaaaacgaggttgggggtcgg	16	5	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8756972	T	T	8756972	1	4	208	0	1	0	0	0	0	0	0	0	422	841	29	4		4	AICDA	12	8756972	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1897052	8756972	125094923	527	163869											
A2M	2	broad.mit.edu	37	chr12	9243990	9243990	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactcggtgatggtgtcaGggactgttactcctacctca	10	12	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9243990	T	T	9243990	3	4	208	1	0	0	0	0	1	0	0	0	4	1000	35	2	2220	2	A2M	12	9243990	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	487018	9243990	124607905	528	163870											
A2M	2	broad.mit.edu	37	chr12	9251203	9251203	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggctgccaggaactcacCgaggacgccgagagctcagc	14	13	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9251203	T	T	9251203	2	4	208	1	0	0	0	0	0	0	0	1	4	666	23	4		4	A2M	12	9251203	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	7213	9251203	124600692	529	163871											
PZP	5858	broad.mit.edu	37	chr12	9317928	9317928	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactcggtgatggtgtcaGggactgttactcctacctca	10	12	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9317928	T	T	9317928	3	4	208	1	0	0	0	0	1	0	0	0	12977	1000	35	2	2226	2	PZP	12	9317928	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	66725	9317928	124533967	530	163872											
KLRF1	51348	broad.mit.edu	37	chr12	9994722	9994722	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatgctagatctggccCaaattcatatattcaacttg	5	10	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9994722	A	A	9994722	1	1	208	0	1	0	0	0	0	0	0	0	8491	609	21	2		2	KLRF1	12	9994722	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	676794	9994722	123857173	531	163873											
PTPRO	5800	broad.mit.edu	37	chr12	15699783	15699783	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttcactgatagaaatTaacagcaggcttagaccaag	9	7	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15699783	A	A	15699783	1	1	208	0	1	0	0	0	0	0	0	0	12917	1769	61	5		5	PTPRO	12	15699783	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	5705061	15699783	118152112	532	163874											
KRAS	3845	broad.mit.edu	37	chr12	25378562	25378562	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttacctgtcttgtctttgCtgatgtttcaataaaaggaa	7	7	3	1	rs121913527		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25378562	G	G	25378562	3	3	208	1	0	0	0	0	1	0	0	0	8509	797	28	4	262	4	KRAS	12	25378562	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	9678779	25378562	108473333	533	163875											
TMTC1	83857	broad.mit.edu	37	chr12	29920851	29920851	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcagtatgaataggatGtacagcaaaaagcaatgccg	10	9	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29920851	A	A	29920851	3	1	208	1	0	0	0	0	1	0	0	0	16383	1377	48	4	2256	4	TMTC1	12	29920851	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4542289	29920851	103931044	534	163876											
DDX11	1663	broad.mit.edu	37	chr12	31240959	31240959	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgtgctgggggtataGgctgggctgtgcacccctgg	19	9	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31240959	T	T	31240959	1	4	208	0	1	0	0	0	0	0	0	0	4376	1015	35	2		2	DDX11	12	31240959	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1320108	31240959	102610936	535	163877											
FGD4	121512	broad.mit.edu	37	chr12	32793039	32793039	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctaacattatcagtggcCtcacgtacaggctctgtact	8	12	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32793039	T	T	32793039	1	4	208	0	1	0	0	0	0	0	0	0	5892	696	24	4		4	FGD4	12	32793039	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1552080	32793039	101058856	536	163878											
KIF21A	55605	broad.mit.edu	37	chr12	39709008	39709008	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atactggaaatgaaattaatTtcctctcccttcccctgcct	4	13	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39709008	A	A	39709008	1	1	208	0	1	0	0	0	0	0	0	0	8358	1856	64	5		5	KIF21A	12	39709008	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	6915969	39709008	94142887	537	163879											
LRRK2	120892	broad.mit.edu	37	chr12	40734100	40734100	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcattttctggcagatacCtccactcagccatgattata	7	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40734100	T	T	40734100	3	4	208	1	0	0	0	0	1	0	0	0	9120	681	24	4	6115	4	LRRK2	12	40734100	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1025092	40734100	93117795	538	163880											
SCN8A	6334	broad.mit.edu	37	chr12	52200403	52200403	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggttgggatggcctgctGctgcccatcctaaaccgccc	12	15	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52200403	T	T	52200403	2	4	208	1	0	0	0	0	0	0	0	1	14037	1306	46	3		3	SCN8A	12	52200403	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	11466303	52200403	81651492	539	163881											
KRT74	121391	broad.mit.edu	37	chr12	52967082	52967082	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggcctcatcctcctcctatGagacccaccttgtcaatgaa	6	16	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52967082	A	A	52967082	1	1	208	0	1	0	0	0	0	0	0	0	8558	1305	45	4		4	KRT74	12	52967082	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	766679	52967082	80884813	540	163882											
KRT1	3848	broad.mit.edu	37	chr12	53071243	53071243	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacattagtttcactgatttGagtctgcatctgagacaact	8	8	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53071243	T	T	53071243	3	4	208	1	0	0	0	0	1	0	0	0	8518	1299	45	3	969	3	KRT1	12	53071243	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	104161	53071243	80780652	541	163883											
NCKAP1L	3071	broad.mit.edu	37	chr12	54903478	54903478	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagttttgcccgtctgggtCagatggtcttggagtatgac	13	9	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54903478	A	A	54903478	3	1	208	1	0	0	0	0	1	0	0	0	10317	827	29	3	554	3	NCKAP1L	12	54903478	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1832235	54903478	78948417	542	163884											
AVIL	10677	broad.mit.edu	37	chr12	58201181	58201181	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccgttcccatcctgactCgaacctgcacagcagcccca	7	19	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58201181	T	T	58201181	3	4	208	1	0	0	0	0	1	0	0	0	1232	884	31	4	1067	4	AVIL	12	58201181	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	3297703	58201181	75650714	543	163885											
SLC35E3	55508	broad.mit.edu	37	chr12	69158527	69158527	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctgcattactttattcGgaggatatgttttatttaag	8	4	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69158527	T	T	69158527	4	4	208	1	0	0	0	0	0	1	0	0	14700	1117	39	1	817	1	SLC35E3	12	69158527	Nonsense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	10957346	69158527	64693368	544	163886											
ZFC3H1	196441	broad.mit.edu	37	chr12	72008596	72008596	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccaaatctcattcttatcAagaaaacctaaacttactcc	1	14	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72008596	T	T	72008596	1	4	208	0	1	0	0	0	0	0	0	0	17759	145	5	5		5	ZFC3H1	12	72008596	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	2850069	72008596	61843299	545	163887											
KCNC2	3747	broad.mit.edu	37	chr12	75444827	75444827	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggtaggatggccacaaAgtcaatgatattcaagagat	11	5	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75444827	G	G	75444827	3	3	208	1	0	0	0	0	1	0	0	0	8085	72	3	5	1036	5	KCNC2	12	75444827	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	3436231	75444827	58407068	546	163888											
MYF6	4618	broad.mit.edu	37	chr12	81101730	81101730	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cacactgccccggccagtgtCtgatctgggcttgcaagacc	11	15	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81101730	T	T	81101730	2	4	208	1	0	0	0	0	0	0	0	1	10122	912	32	4		4	MYF6	12	81101730	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	5656903	81101730	52750165	547	163889											
C12orf12	196477	broad.mit.edu	37	chr12	91348421	91348421	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatggcaggacgaccaggaGctcaaggaggccgagtgtgc	17	10	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91348421	T	T	91348421	3	4	208	1	0	0	0	0	1	0	0	0	1689	962	34	3	1125	3	C12orf12	12	91348421	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	10246691	91348421	42503474	548	163890											
PRDM4	11108	broad.mit.edu	37	chr12	108147700	108147700	+	Splice_Site	DEL	C	-	-													tcaagtaactgtaacacttaCcaggtagaatggttctgaaa							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	108147700	-	-	108147700	8	5	208	1	0	1	0	1	0	0	1	0	12565	521	18	0	2109	0	PRDM4	12	108147700	Splice_Site	DEL	C	TCGA-73-4670-01A-01D-1265-08	16799279	108147700	25704195	549	163891											
CUX2	23316	broad.mit.edu	37	chr12	111655820	111655820	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacctagagttgcccaggGgggccagcagcctccagaag	13	15	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111655820	A	A	111655820	1	1	208	0	1	0	0	0	0	0	0	0	4098	1247	43	4		4	CUX2	12	111655820	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3508120	111655820	22196075	550	163892											
CUX2	23316	broad.mit.edu	37	chr12	111744885	111744885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatcgccgacctggagcGgcagctcacggccaagtccg	13	16	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111744885	T	T	111744885	3	4	208	1	0	0	0	0	1	0	0	0	4098	1116	39	1	1061	1	CUX2	12	111744885	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	89065	111744885	22107010	551	163893											
C12orf51	283450	broad.mit.edu	37	chr12	112708247	112708247	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattggtttataacctcattCgtggttatagcctcttctag	7	8	3	0	rs141149924	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112708247	A	A	112708247	2	1	208	1	0	0	0	0	0	0	0	1	1709	871	31	3		3	C12orf51	12	112708247	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	963362	112708247	21143648	552	163894											
TPCN1	53373	broad.mit.edu	37	chr12	113698115	113698120	+	Intron	DEL	GTGTCT	-	-													ggcttttcttctgccaaacgGtgtctttttgctcttaagcc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113698120	-	-	113698115	6	5	208	0	1	1	0	1	0	0	0	0	16519	1276	44	0		0	TPCN1	12	113698115	Intron	DEL	GTGTCT	TCGA-73-4670-01A-01D-1265-08	989868	113698115	20153780	553	163895											
KNTC1	9735	broad.mit.edu	37	chr12	123089595	123089595	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctacgaacatcctagcatcAatcaaagaattcagaattca	4	10	5	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123089595	C	C	123089595	3	2	208	1	0	0	0	0	1	0	0	0	8499	130	5	5	5541	5	KNTC1	12	123089595	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	9391480	123089595	10762300	554	163896											
PIWIL1	9271	broad.mit.edu	37	chr12	130827667	130827667	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaagagaaagtaaaaggaAgtcttaacaactctgttcaa	9	5	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130827667	G	G	130827667	1	3	208	0	1	0	0	0	0	0	0	0	12052	87	3	5		5	PIWIL1	12	130827667	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	7738072	130827667	3024228	555	163897											
ZMYM2	7750	broad.mit.edu	37	chr13	20605471	20605471	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttaggctctaagtatgCagtcatctccaaatggccag	9	9	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20605471	A	A	20605471	3	1	208	1	0	0	0	0	1	0	0	0	17826	711	25	3	1894	3	ZMYM2	13	20605471	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08		20605471	94564407	556	163898											
LNX2	222484	broad.mit.edu	37	chr13	28143266	28143267	+	Frame_Shift_Ins	INS	-	GC	GC													agtgccgctccacaggcactINSgcgcctgtccccaaacagtc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	28143267	GC	GC	28143266	7	5	208	1	0	1	1	0	0	0	0	0	8940	1567	55	0	1549	0	LNX2	13	28143266	Frame_Shift_Ins	INS	-	TCGA-73-4670-01A-01D-1265-08	7537795	28143266	87026612	557	163899											
FLT1	2321	broad.mit.edu	37	chr13	29001274	29001275	+	Intron	INS	-	A	A													aaaagtatttgaaagttagtINSaaaaaaactgactgtcccta							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29001275	A	A	29001274	6	5	208	0	1	1	1	0	0	0	0	0	5999	1653	57	0		0	FLT1	13	29001274	Intron	INS	-	TCGA-73-4670-01A-01D-1265-08	858008	29001274	86168604	558	163900	691	2									
FLT1	2321	broad.mit.edu	37	chr13	29001283	29001283	+	Intron	SNP	T	C	C													ttgaaagttagtaaaaaaacTgactgtccctaccttgcttc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29001283	C	C	29001283	1	2	208	0	1	0	0	0	0	0	0	0	5999	1595	55	5		5	FLT1	13	29001283	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	9	29001283	86168595	559	163901	691	2									
USPL1	10208	broad.mit.edu	37	chr13	31221210	31221210	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaagtgagttaaaattgtCttataatttttagtacaaaa	6	2	1	1	rs77456109	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31221210	T	T	31221210	1	4	208	0	1	0	0	0	0	0	0	0	17219	928	32	4		4	USPL1	13	31221210	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2219927	31221210	83948668	560	163902											
BRCA2	675	broad.mit.edu	37	chr13	32906375	32906375	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaattatatggcttataaAatattaatgtgcttctgttt	5	3	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32906375	G	G	32906375	1	3	208	0	1	0	0	0	0	0	0	0	1508	29	1	5		5	BRCA2	13	32906375	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1685165	32906375	82263503	561	163903											
STARD13	90627	broad.mit.edu	37	chr13	33687163	33687163	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacattcctcgtgtgaacaCgcacccagagtcatcatcaa	6	15	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33687163	A	A	33687163	1	1	208	0	1	0	0	0	0	0	0	0	15374	551	19	3		3	STARD13	13	33687163	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	780788	33687163	81482715	562	163904											
DCLK1	9201	broad.mit.edu	37	chr13	36401830	36401830	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catccatctcctcaatcagaAgaacgatattgggatgcttc	7	11	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36401830	G	G	36401830	3	3	208	1	0	0	0	0	1	0	0	0	4324	72	3	5	876	5	DCLK1	13	36401830	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	2714667	36401830	78768048	563	163905											
TRPC4	7223	broad.mit.edu	37	chr13	38357161	38357161	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccgacgacttcttttctgaTagcatgtaatagagcatctc	7	10	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38357161	A	A	38357161	3	1	208	1	0	0	0	0	1	0	0	0	16705	1406	49	5	2678	5	TRPC4	13	38357161	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1955331	38357161	76812717	564	163906											
ENOX1	55068	broad.mit.edu	37	chr13	43935496	43935496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgttggtggtgggggagGtaccagtccaaggcctggta	17	7	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43935496	T	T	43935496	3	4	208	1	0	0	0	0	1	0	0	0	5168	1261	44	3	1678	3	ENOX1	13	43935496	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	5578335	43935496	71234382	565	163907											
MED4	29079	broad.mit.edu	37	chr13	48655939	48655939	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttagaaatgtatctatcaGttacacatcgtatttaattt	5	5	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48655939	A	A	48655939	1	1	208	0	1	0	0	0	0	0	0	0	9543	1044	36	4		4	MED4	13	48655939	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	4720443	48655939	66513939	566	163908											
GPC5	2262	broad.mit.edu	37	chr13	92345504	92345504	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatacttttttgcagtacctAcaggaacatggccttggagg	10	8	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92345504	G	G	92345504	3	3	208	1	0	0	0	0	1	0	0	0	6666	391	14	5	399	5	GPC5	13	92345504	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	43689565	92345504	22824374	567	163909											
ABCC4	10257	broad.mit.edu	37	chr13	95899972	95899972	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcatcttcctctaatctcCgtttatggccaattttaaac	3	11	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95899972	T	T	95899972	3	4	208	1	0	0	0	0	1	0	0	0	55	652	23	4	4036	4	ABCC4	13	95899972	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	3554468	95899972	19269906	568	163910											
ITGBL1	9358	broad.mit.edu	37	chr13	102105126	102105126	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctccctcctgccgcctcCctcggtgaaccccaccttgc	6	23	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102105126	T	T	102105126	1	4	208	0	1	0	0	0	0	0	0	0	7972	638	22	4		4	ITGBL1	13	102105126	5'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	6205154	102105126	13064752	569	163911											
MYO16	23026	broad.mit.edu	37	chr13	109475528	109475528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaagccgaaattgcctgGgaagaaaaaatgaaagagcc	11	7	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109475528	T	T	109475528	3	4	208	1	0	0	0	0	1	0	0	0	10158	1241	43	2	963	2	MYO16	13	109475528	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	7370402	109475528	5694350	570	163912											
COL4A1	1282	broad.mit.edu	37	chr13	110827079	110827079	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagggcttcctgggaaaccCgctatcccttgatctccctg	9	16	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110827079	G	G	110827079	2	3	208	1	0	0	0	0	0	0	0	1	3721	639	23	4		4	COL4A1	13	110827079	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	1351551	110827079	4342799	571	163913											
MCF2L	23263	broad.mit.edu	37	chr13	113732728	113732728	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgagggcggtgcgctccggaGagggccctaccggagggcca	19	13	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113732728	T	T	113732728	3	4	208	1	0	0	0	0	1	0	0	0	9472	942	33	3	2032	3	MCF2L	13	113732728	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2905649	113732728	1437150	572	163914											
MYH6	4624	broad.mit.edu	37	chr14	23863354	23863354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagctccttgcggcgagCctcggacttctccagcgtct	10	17	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23863354	A	A	23863354	3	1	208	1	0	0	0	0	1	0	0	0	10132	739	26	3	3287	3	MYH6	14	23863354	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08		23863354	83486186	573	163915											
DHRS2	10202	broad.mit.edu	37	chr14	24113619	24113619	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaattcccttcccaggCgctgggtgtctacaatgtca	9	13	3	0	rs143433482	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24113619	T	T	24113619	3	4	208	1	0	0	0	0	1	0	0	0	4530	782	27	4	564	4	DHRS2	14	24113619	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	250265	24113619	83235921	574	163916											
PSME2	5721	broad.mit.edu	37	chr14	24615525	24615525	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacccacaacagggtgcccTcgaactgtggctcaggcctt	10	16	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24615525	C	C	24615525	1	2	208	0	1	0	0	0	0	0	0	0	12813	1566	54	5		5	PSME2	14	24615525	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	501906	24615525	82734015	575	163917											
G2E3	55632	broad.mit.edu	37	chr14	31074781	31074782	+	Frame_Shift_Ins	INS	-	T	T													attccaaattaaaaaaaaaaINSctaaaagattgtatatcaac							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31074782	T	T	31074781	7	5	208	1	0	1	1	0	0	0	0	0	6200	43	2	0	1119	0	G2E3	14	31074781	Frame_Shift_Ins	INS	-	TCGA-73-4670-01A-01D-1265-08	6459256	31074781	76274759	576	163918											
CLEC14A	161198	broad.mit.edu	37	chr14	38724597	38724597	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccggcagagcgcactcacctCggtcccaggtggactgaagt	13	14	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38724597	A	A	38724597	4	1	208	1	0	0	0	0	0	1	0	0	3531	893	31	3	845	3	CLEC14A	14	38724597	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	7649816	38724597	68624943	577	163919											
LRFN5	145581	broad.mit.edu	37	chr14	42373273	42373273	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacatttagttacttttagaTtgctagcacaatgatcttat	5	6	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42373273	A	A	42373273	1	1	208	0	1	0	0	0	0	0	0	0	9028	1508	52	5		5	LRFN5	14	42373273	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	3648676	42373273	64976267	578	163920											
C14orf106	55320	broad.mit.edu	37	chr14	45716193	45716193	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctttattttttaatccatcCttgttgggctttatagcact	6	8	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45716193	A	A	45716193	3	1	208	1	0	0	0	0	1	0	0	0	1751	680	24	2	3165	2	C14orf106	14	45716193	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	3342920	45716193	61633347	579	163921											
PPIL5	122769	broad.mit.edu	37	chr14	50074328	50074328	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttcagacttcttactgtGggcttgtccgagttgatatg	10	8	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50074328	A	A	50074328	3	1	208	1	0	0	0	0	1	0	0	0	12431	1348	47	4	503	4	PPIL5	14	50074328	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4358135	50074328	57275212	580	163922											
SDCCAG1	9147	broad.mit.edu	37	chr14	50307383	50307383	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagggtctcattatgttGcccagtacattttaatacaa	7	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50307383	T	T	50307383	1	4	208	0	1	0	0	0	0	0	0	0	14070	1334	46	3		3	SDCCAG1	14	50307383	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	233055	50307383	57042157	581	163923											
SLC35F4	341880	broad.mit.edu	37	chr14	58060834	58060835	+	In_Frame_Ins	INS	-	GGA	GGA													catctagtgactgatgatctINSggaggtacctggaaagacag							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	GGA	58060835	GGA	GGA	58060834	7	5	208	1	0	1	1	0	0	0	0	0	14705	1588	55	0	1373	0	SLC35F4	14	58060834	In_Frame_Ins	INS	-	TCGA-73-4670-01A-01D-1265-08	7753451	58060834	49288706	582	163924											
RHOJ	57381	broad.mit.edu	37	chr14	63747808	63747808	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggaatgggtccccgagctCaaggactgcatgcctcacgt	13	12	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63747808	A	A	63747808	2	1	208	1	0	0	0	0	0	0	0	1	13450	813	29	3		3	RHOJ	14	63747808	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	5686974	63747808	43601732	583	163925											
MTHFD1	4522	broad.mit.edu	37	chr14	64879047	64879047	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagtgaatgatgaatgggttGaagtgagggactcattcttc	13	4	2	5			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64879047	A	A	64879047	1	1	208	0	1	0	0	0	0	0	0	0	10021	1305	45	4		4	MTHFD1	14	64879047	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1131239	64879047	42470493	584	163926											
FUT8	2530	broad.mit.edu	37	chr14	66082844	66082844	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtgttttcccctcctcaGtatatgggctttagcacaga	8	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66082844	A	A	66082844	1	1	208	0	1	0	0	0	0	0	0	0	6170	1044	36	4		4	FUT8	14	66082844	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1203797	66082844	41266696	585	163927											
SYNJ2BP	55333	broad.mit.edu	37	chr14	70842255	70842255	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagaagtaccaatggacCcctccctttgcctgagaaac	8	13	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70842255	A	A	70842255	1	1	208	0	1	0	0	0	0	0	0	0	15573	638	22	2		2	SYNJ2BP	14	70842255	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	4759411	70842255	36507285	586	163928											
MAP3K9	4293	broad.mit.edu	37	chr14	71197546	71197546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggagacgggggaattcacCtgggtctcggctgggactgg	19	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71197546	A	A	71197546	3	1	208	1	0	0	0	0	1	0	0	0	9349	681	24	2	452	2	MAP3K9	14	71197546	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	355291	71197546	36151994	587	163929											
LTBP2	4053	broad.mit.edu	37	chr14	75019619	75019619	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcggaagccagacttgggatCgtgcccatggccgccctggc	15	14	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75019619	A	A	75019619	3	1	208	1	0	0	0	0	1	0	0	0	9161	884	31	3	4425	3	LTBP2	14	75019619	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	3822073	75019619	32329921	588	163930											
DIO2	1734	broad.mit.edu	37	chr14	80669424	80669424	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcttccaccagtttgcGgaaggctggcagctggctcg	13	12	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80669424	T	T	80669424	3	4	208	1	0	0	0	0	1	0	0	0	4565	1116	39	1	395	1	DIO2	14	80669424	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	5649805	80669424	26680116	589	163931											
TSHR	7253	broad.mit.edu	37	chr14	81449856	81449856	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagccagtcttgttagtgGtgtggccatatttattaaca	9	6	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81449856	T	T	81449856	1	4	208	0	1	0	0	0	0	0	0	0	16747	1276	44	3		3	TSHR	14	81449856	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	780432	81449856	25899684	590	163932											
C14orf102	55051	broad.mit.edu	37	chr14	90782973	90782973	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caacgcctctggaaggtttgTccttttcagaatcggtgtct	10	10	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90782973	A	A	90782973	3	1	208	1	0	0	0	0	1	0	0	0	1748	1667	58	5	3186	5	C14orf102	14	90782973	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	9333117	90782973	16566567	591	163933											
KIAA1409	57578	broad.mit.edu	37	chr14	94067067	94067067	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatttgagacgctttctttGgaagcccagctacatttgga	10	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94067067	A	A	94067067	2	1	208	1	0	0	0	0	0	0	0	1	8300	1339	47	4		4	KIAA1409	14	94067067	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	3284094	94067067	13282473	592	163934											
PRIMA1	145270	broad.mit.edu	37	chr14	94245748	94245748	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccaccccgtcccctgccAggctgggacttgggattcct	12	16	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94245748	G	G	94245748	1	3	208	0	1	0	0	0	0	0	0	0	12598	203	7	5		5	PRIMA1	14	94245748	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	178681	94245748	13103792	593	163935											
SERPINA11	256394	broad.mit.edu	37	chr14	94914915	94914915	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccgggggcgtctgctGccagctctttatacaaacgc	11	12	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94914915	A	A	94914915	3	1	208	1	0	0	0	0	1	0	0	0	14201	1319	46	4	1087	4	SERPINA11	14	94914915	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	669167	94914915	12434625	594	163936											
SERPINA5	5104	broad.mit.edu	37	chr14	95058670	95058670	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctggtagctagtgatttacAcaggtttagttgactaatga	11	5	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95058670	T	T	95058670	1	4	208	0	1	0	0	0	0	0	0	0	14205	174	6	5		5	SERPINA5	14	95058670	3'UTR	SNP	A	TCGA-73-4670-01A-01D-1265-08	143755	95058670	12290870	595	163937											
C14orf49	161176	broad.mit.edu	37	chr14	95921952	95921952	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcctcatctcttccagttctCcggtgatcttctctgcaccc	5	17	5	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95921952	G	G	95921952	3	3	208	1	0	0	0	0	1	0	0	0	1789	855	30	4	2080	4	C14orf49	14	95921952	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	863282	95921952	11427588	596	163938											
DEGS2	123099	broad.mit.edu	37	chr14	100615316	100615316	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacataccagcggcaggtTgtagcccgggatgctgggga	16	11	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100615316	C	C	100615316	3	2	208	1	0	0	0	0	1	0	0	0	4463	1812	63	5	165	5	DEGS2	14	100615316	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	4693364	100615316	6734224	597	163939											
BEGAIN	57596	broad.mit.edu	37	chr14	101010278	101010278	+	Frame_Shift_Del	DEL	G	-	-													aatctcgtggctcagcgcacGcttctcctcctcatagtgct					rs140676218		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	101010278	-	-	101010278	7	5	208	1	0	1	0	1	0	0	0	0	1402	1087	38	0	1525	0	BEGAIN	14	101010278	Frame_Shift_Del	DEL	G	TCGA-73-4670-01A-01D-1265-08	394962	101010278	6339262	598	163940											
ANKRD9	122416	broad.mit.edu	37	chr14	102973214	102973214	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaatatatataaagtgccGgtacaacgctctgaaaaata	6	7	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102973214	A	A	102973214	1	1	208	0	1	0	0	0	0	0	0	0	687	1131	39	4		4	ANKRD9	14	102973214	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	1962936	102973214	4376326	599	163941											
KLC1	3831	broad.mit.edu	37	chr14	104123946	104123946	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaagcagaaactgcgtgcgCaggttcgtcgtctgtgccag	14	10	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104123946	T	T	104123946	4	4	208	1	0	0	0	0	0	1	0	0	8404	711	25	4	331	4	KLC1	14	104123946	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1150732	104123946	3225594	600	163942											
TUBGCP5	114791	broad.mit.edu	37	chr15	22873413	22873413	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatcccagcacgatgggagGccaagacaggcagatcactt	11	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22873413	A	A	22873413	1	1	208	0	1	0	0	0	0	0	0	0	16895	1218	42	4		4	TUBGCP5	15	22873413	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08		22873413	79657979	601	163943											
OCA2	4948	broad.mit.edu	37	chr15	28277090	28277090	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acatctactacaataaattgTcaaggatctggcagaggtta	8	7	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28277090	C	C	28277090	1	2	208	0	1	0	0	0	0	0	0	0	10910	1682	58	5		5	OCA2	15	28277090	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	5403677	28277090	74254302	602	163944											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32925163	32925163	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatatgtgtggtatattacaTgtggttatttttgtagttca	10	2	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32925163	C	C	32925163	1	2	208	0	1	0	0	0	0	0	0	0	865	1479	51	5		5	ARHGAP11A	15	32925163	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	4648073	32925163	69606229	603	163945											
FMN1	342184	broad.mit.edu	37	chr15	33149412	33149412	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctatcaattgtgcacactCcttgtcaaccactgttggtc	8	12	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33149412	A	A	33149412	1	1	208	0	1	0	0	0	0	0	0	0	6007	870	30	3		3	FMN1	15	33149412	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	224249	33149412	69381980	604	163946											
RYR3	6263	broad.mit.edu	37	chr15	33603217	33603217	+	Translation_Start_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagcagaggcgccggaGgctggggcaccgccgacgcc	20	13	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33603217	T	T	33603217	1	4	208	1	0	0	0	0	0	0	0	0	13881	1015	35	2		2	RYR3	15	33603217	Translation_Start_Site	SNP	G	TCGA-73-4670-01A-01D-1265-08	453805	33603217	68928175	605	163947											
RYR3	6263	broad.mit.edu	37	chr15	33603235	33603235	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctggggcaccgccgacGcctcgggagccatggccgaa	17	14	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33603235	T	T	33603235	1	4	208	0	1	0	0	0	0	0	0	0	13881	1102	38	3		3	RYR3	15	33603235	5'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	18	33603235	68928157	606	163948											
RYR3	6263	broad.mit.edu	37	chr15	33765573	33765573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtgactcggggcctggCtcagcagttccccttactca	12	13	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33765573	A	A	33765573	1	1	208	0	1	0	0	0	0	0	0	0	13881	812	28	3		3	RYR3	15	33765573	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	162338	33765573	68765819	607	163949											
RYR3	6263	broad.mit.edu	37	chr15	34103250	34103250	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggaaaaggtgatgactcaGgacagcagtgagaactcaca	12	8	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34103250	C	C	34103250	1	2	208	0	1	0	0	0	0	0	0	0	13881	1015	35	4		4	RYR3	15	34103250	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	337677	34103250	68428142	608	163950											
C15orf55	256646	broad.mit.edu	37	chr15	34648661	34648661	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtgattccctgtggaGgcacagttgcggcagctgcc	15	11	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34648661	A	A	34648661	3	1	208	1	0	0	0	0	1	0	0	0	1816	1000	35	4	2394	4	C15orf55	15	34648661	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	545411	34648661	67882731	609	163951											
ACTC1	70	broad.mit.edu	37	chr15	35086858	35086858	+	Intron	DEL	G	-	-													gaaggggtcccgagtgggacGgggggctcggcgggaagttt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35086858	-	-	35086858	6	5	208	0	1	1	0	1	0	0	0	0	195	1131	39	0		0	ACTC1	15	35086858	Intron	DEL	G	TCGA-73-4670-01A-01D-1265-08	438197	35086858	67444534	610	163952											
BUB1B	701	broad.mit.edu	37	chr15	40462863	40462863	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatagtgatcctcgatttcTcaatctctggcttaaattag	6	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40462863	A	A	40462863	3	1	208	1	0	0	0	0	1	0	0	0	1581	1551	54	5	379	5	BUB1B	15	40462863	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	5376005	40462863	62068529	611	163953											
MGA	23269	broad.mit.edu	37	chr15	42058761	42058761	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagacactgacttcactgctCaatgaaattgcctttcttaa	6	10	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42058761	T	T	42058761	2	4	208	1	0	0	0	0	0	0	0	1	9633	813	29	4		4	MGA	15	42058761	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	1595898	42058761	60472631	612	163954											
CAPN3	825	broad.mit.edu	37	chr15	42703268	42703268	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaacaggcatctcacctgAtaatctccagtctgctccat	7	14	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42703268	T	T	42703268	1	4	208	0	1	0	0	0	0	0	0	0	2654	348	12	5		5	CAPN3	15	42703268	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	644507	42703268	59828124	613	163955											
MFAP1	4236	broad.mit.edu	37	chr15	44102151	44102151	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttattggtactgttacaGcttcagaaagaccaaattat	6	6	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44102151	A	A	44102151	1	1	208	0	1	0	0	0	0	0	0	0	9606	986	34	4		4	MFAP1	15	44102151	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1398883	44102151	58429241	614	163956											
DUOXA1	90527	broad.mit.edu	37	chr15	45412254	45412254	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgcccccaggccctccctCcctggccttgagacttctag	9	18	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45412254	A	A	45412254	1	1	208	0	1	0	0	0	0	0	0	0	4842	870	30	3		3	DUOXA1	15	45412254	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1310103	45412254	57119138	615	163957											
DUOXA1	90527	broad.mit.edu	37	chr15	45412272	45412272	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctggccttgagacttcTagtgcttgtctttagggctg	11	11	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45412272	C	C	45412272	1	2	208	0	1	0	0	0	0	0	0	0	4842	1537	53	5		5	DUOXA1	15	45412272	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	18	45412272	57119120	616	163958											
SLC28A2	9153	broad.mit.edu	37	chr15	45557792	45557792	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcattacaggccttaccaatCatcattttctttggatgtgt	6	9	4	0	rs114596394	byFrequency;by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45557792	T	T	45557792	2	4	208	1	0	0	0	0	0	0	0	1	14646	816	29	4		4	SLC28A2	15	45557792	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	145520	45557792	56973600	617	163959											
SEMA6D	80031	broad.mit.edu	37	chr15	48063496	48063497	+	Nonsense_Mutation	DNP	GG	TT	TT													aacttaatgctggatcccatGggatcgatgtctgaggtccc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	48063497	TT	TT	48063496	4	4	208	1	0	0	0	0	0	1	0	0	14155	1348	47	2	2849	2	SEMA6D	15	48063496	Nonsense_Mutation	DNP	GG	TCGA-73-4670-01A-01D-1265-08	2505704	48063496	54467896	618	163960											
COPS2	9318	broad.mit.edu	37	chr15	49431798	49431798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcttgtgactgcactcCgaatataggtcaatagctgc	8	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49431798	A	A	49431798	3	1	208	1	0	0	0	0	1	0	0	0	3765	652	23	1	1093	1	COPS2	15	49431798	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1368302	49431798	53099594	619	163961											
TNFAIP8L3	388121	broad.mit.edu	37	chr15	51397544	51397544	+	5'Flank	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttactttgcttcaaaaaTtaattagattggactttctg	5	7	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51397544	G	G	51397544	1	3	208	0	1	0	0	0	0	0	0	0	16402	1508	52	5		5	TNFAIP8L3	15	51397544	5'Flank	SNP	T	TCGA-73-4670-01A-01D-1265-08	1965746	51397544	51133848	620	163962											
MYO5A	4644	broad.mit.edu	37	chr15	52676246	52676246	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgatctcacagtgaaagcTctaggctctcctcacctgag	8	12	4	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52676246	G	G	52676246	1	3	208	0	1	0	0	0	0	0	0	0	10172	1566	54	5		5	MYO5A	15	52676246	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1278702	52676246	49855146	621	163963											
WDR72	256764	broad.mit.edu	37	chr15	53992225	53992225	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttttttctcccagtaacAtaaaaaagttttgttaaagc	5	6	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53992225	G	G	53992225	1	3	208	0	1	0	0	0	0	0	0	0	17449	232	8	5		5	WDR72	15	53992225	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	1315979	53992225	48539167	622	163964											
UNC13C	440279	broad.mit.edu	37	chr15	54528769	54528769	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataagaagtttgttctgcAagaatttaacctctggttca	8	6	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54528769	G	G	54528769	1	3	208	0	1	0	0	0	0	0	0	0	17112	145	5	5		5	UNC13C	15	54528769	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	536544	54528769	48002623	623	163965											
MNS1	55329	broad.mit.edu	37	chr15	56757291	56757291	+	5'UTR	DEL	G	-	-													cgctcgggtgtttacgcggcGtcttggcaacggtggagctg					rs1711486		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56757291	-	-	56757291	6	5	208	0	1	1	0	1	0	0	0	0	9771	1160	40	0		0	MNS1	15	56757291	5'UTR	DEL	G	TCGA-73-4670-01A-01D-1265-08	2228522	56757291	45774101	624	163966											
VPS13C	54832	broad.mit.edu	37	chr15	62167002	62167002	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttattaaataaaagcatttGtttttcataacaacgtattt	3	4	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62167002	A	A	62167002	1	1	208	0	1	0	0	0	0	0	0	0	17318	1392	48	4		4	VPS13C	15	62167002	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	5409711	62167002	40364390	625	163967											
CILP	8483	broad.mit.edu	37	chr15	65499138	65499138	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggtgggcagaggaagcGtacggtgtaattagagcagt	16	6	0	2	rs142891097	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65499138	A	A	65499138	3	1	208	1	0	0	0	0	1	0	0	0	3460	1145	40	4	3172	4	CILP	15	65499138	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3332136	65499138	37032254	626	163968											
CLN6	54982	broad.mit.edu	37	chr15	68500662	68500662	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtccaggaagaggcgcTtgcgcttctggtgcaggacg	16	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68500662	C	C	68500662	3	2	208	1	0	0	0	0	1	0	0	0	3577	1609	56	5	187	5	CLN6	15	68500662	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	3001524	68500662	34030730	627	163969											
CORO2B	10391	broad.mit.edu	37	chr15	68937779	68937779	+	Intron	DEL	C	-	-													gtctctcttaggcctgttgaCcctacttctctctgagttcc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68937779	-	-	68937779	6	5	208	0	1	1	0	1	0	0	0	0	3789	522	18	0		0	CORO2B	15	68937779	Intron	DEL	C	TCGA-73-4670-01A-01D-1265-08	437117	68937779	33593613	628	163970											
CYP11A1	1583	broad.mit.edu	37	chr15	74654233	74654233	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacggttcccagtttttcatCtgcactgacaagactgagtg	9	10	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74654233	T	T	74654233	1	4	208	0	1	0	0	0	0	0	0	0	4177	928	32	4		4	CYP11A1	15	74654233	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	5716454	74654233	27877159	629	163971											
MORF4L1	10933	broad.mit.edu	37	chr15	79177320	79177320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatcagaagtgctgtgaGgcccaggcgctctgaaaaat	12	9	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79177320	T	T	79177320	3	4	208	1	0	0	0	0	1	0	0	0	9800	1000	35	2	181	2	MORF4L1	15	79177320	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4523087	79177320	23354072	630	163972											
IL16	3603	broad.mit.edu	37	chr15	81552230	81552230	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaactcaaccagtaagtgtCttcccaacatgtcttcagga	7	12	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81552230	G	G	81552230	1	3	208	0	1	0	0	0	0	0	0	0	7703	928	32	4		4	IL16	15	81552230	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2374910	81552230	20979162	631	163973											
HDGFRP3	50810	broad.mit.edu	37	chr15	83807849	83807849	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaaaaaggctaaaatgtCttttccccccgaaacacaac	4	11	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83807849	T	T	83807849	1	4	208	0	1	0	0	0	0	0	0	0	7088	928	32	4		4	HDGFRP3	15	83807849	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	2255619	83807849	18723543	632	163974											
SH3GL3	6457	broad.mit.edu	37	chr15	84286759	84286759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaagggtctctctgagctTttccacatttccaatttccc	6	12	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84286759	A	A	84286759	1	1	208	0	1	0	0	0	0	0	0	0	14365	1856	64	5		5	SH3GL3	15	84286759	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	478910	84286759	18244633	633	163975											
ALPK3	57538	broad.mit.edu	37	chr15	85406317	85406317	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagatgcagcccagaattcaGatgcttggcctcagagagct	12	10	2	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85406317	C	C	85406317	1	2	208	0	1	0	0	0	0	0	0	0	546	957	33	4		4	ALPK3	15	85406317	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1119558	85406317	17125075	634	163976											
NTRK3	4916	broad.mit.edu	37	chr15	88524525	88524525	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatatatagtgagttgatGggactagatgatctctattg	10	4	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88524525	T	T	88524525	1	4	208	0	1	0	0	0	0	0	0	0	10803	1348	47	2		2	NTRK3	15	88524525	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3118208	88524525	14006867	635	163977											
NTRK3	4916	broad.mit.edu	37	chr15	88669516	88669516	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttacccttcattccaaatTtggaccgtcgaccatatttg	5	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88669516	C	C	88669516	3	2	208	1	0	0	0	0	1	0	0	0	10803	1841	64	5	1431	5	NTRK3	15	88669516	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	144991	88669516	13861876	636	163978											
IDH2	3418	broad.mit.edu	37	chr15	90631767	90631767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggatggctaggcgaggagCtccagtcggggggtgcccag	20	9	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90631767	A	A	90631767	1	1	208	0	1	0	0	0	0	0	0	0	7565	812	28	3		3	IDH2	15	90631767	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1962251	90631767	11899625	637	163979											
UNC45A	55898	broad.mit.edu	37	chr15	91485504	91485504	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaacaaaattatcctgccAttaccctgggtcatgccatc	5	13	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91485504	T	T	91485504	1	4	208	0	1	0	0	0	0	0	0	0	17114	232	8	5		5	UNC45A	15	91485504	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	853737	91485504	11045888	638	163980											
RCCD1	91433	broad.mit.edu	37	chr15	91503244	91503244	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggtgagggtcatctcgGctcccacagccgtctcccca	12	15	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91503244	T	T	91503244	1	4	208	0	1	0	0	0	0	0	0	0	13283	1218	42	3		3	RCCD1	15	91503244	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	17740	91503244	11028148	639	163981											
PCSK6	5046	broad.mit.edu	37	chr15	101924507	101924507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccacccaatggtccaCcagaacgccactgccgcacc	9	19	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101924507	A	A	101924507	1	1	208	0	1	0	0	0	0	0	0	0	11698	508	18	3		3	PCSK6	15	101924507	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	10421263	101924507	606885	640	163982											
MSLN	10232	broad.mit.edu	37	chr16	814687	814687	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctctgagccccccgaggAcctggacgccctcccattgg	11	18	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	814687	T	T	814687	3	4	208	1	0	0	0	0	1	0	0	0	9975	275	10	5	359	5	MSLN	16	814687	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08		814687	89540066	641	163983											
TPSB2	64499	broad.mit.edu	37	chr16	1278756	1278756	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccctcgccccagctgaccAcgcccgcctgcagccaggtg	11	20	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1278756	T	T	1278756	3	4	208	1	0	0	0	0	1	0	0	0	16548	159	6	5	109	5	TPSB2	16	1278756	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	464069	1278756	89075997	642	163984											
ALG1	56052	broad.mit.edu	37	chr16	5127543	5127543	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcacatcaggtaccatGgcctgggatgacggcggcct	14	12	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5127543	T	T	5127543	1	4	208	0	1	0	0	0	0	0	0	0	510	1363	47	2		2	ALG1	16	5127543	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3848787	5127543	85227210	643	163985											
KIAA0430	9665	broad.mit.edu	37	chr16	15725370	15725370	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttacctgcattaatttatAataagggtgaataagcagga	10	4	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15725370	C	C	15725370	1	2	208	0	1	0	0	0	0	0	0	0	8247	377	13	5		5	KIAA0430	16	15725370	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	10597827	15725370	74629383	644	163986											
NOMO3	408050	broad.mit.edu	37	chr16	16349579	16349579	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttctttgttttctagccCgtgttccacgtcatgggatt	9	9	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16349579	A	A	16349579	2	1	208	1	0	0	0	0	0	0	0	1	10628	639	23	1		1	NOMO3	16	16349579	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	624209	16349579	74005174	645	163987											
XYLT1	64131	broad.mit.edu	37	chr16	17202974	17202974	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcactgggtgccatgcatCgcctcatttaattcacatga	8	12	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17202974	A	A	17202974	1	1	208	0	1	0	0	0	0	0	0	0	17590	899	31	3		3	XYLT1	16	17202974	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	853395	17202974	73151779	646	163988											
ACSM2B	348158	broad.mit.edu	37	chr16	20559544	20559544	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgtttgccctcagcctccCtggaaccaaagtccactcag	7	15	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20559544	T	T	20559544	1	4	208	0	1	0	0	0	0	0	0	0	184	696	24	4		4	ACSM2B	16	20559544	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3356570	20559544	69795209	647	163989											
ANKS4B	257629	broad.mit.edu	37	chr16	21262294	21262294	+	3'UTR	DEL	G	-	-													agagacccaaactttactctGggaggtaggctatgcccatc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21262294	-	-	21262294	6	5	208	0	1	1	0	1	0	0	0	0	691	1363	47	0		0	ANKS4B	16	21262294	3'UTR	DEL	G	TCGA-73-4670-01A-01D-1265-08	702750	21262294	69092459	648	163990											
VWA3A	146177	broad.mit.edu	37	chr16	22160991	22160991	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtaggggtcttcagtgaCgagcaagaatagtcctcatg	13	7	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22160991	A	A	22160991	1	1	208	0	1	0	0	0	0	0	0	0	17367	551	19	3		3	VWA3A	16	22160991	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	898697	22160991	68193762	649	163991											
RNF40	9810	broad.mit.edu	37	chr16	30777389	30777389	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcgatcattgccctgcaCggggtgcttggggtggagtg	17	8	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30777389	T	T	30777389	1	4	208	0	1	0	0	0	0	0	0	0	13604	551	19	4		4	RNF40	16	30777389	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	8616398	30777389	59577364	650	163992											
ITGAX	3687	broad.mit.edu	37	chr16	31368684	31368684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctcccggtgtccaggcaGggtgagtgtcgggaccacca	16	12	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31368684	T	T	31368684	3	4	208	1	0	0	0	0	1	0	0	0	7959	1014	35	2	447	2	ITGAX	16	31368684	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	591295	31368684	58986069	651	163993											
PHKB	5257	broad.mit.edu	37	chr16	47722853	47722853	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acggcctcttcttcattctcCtttgaatgggtcagtgctat	8	11	5	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47722853	T	T	47722853	1	4	208	0	1	0	0	0	0	0	0	0	11940	696	24	4		4	PHKB	16	47722853	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	16354169	47722853	42631900	652	163994											
RBL2	5934	broad.mit.edu	37	chr16	53503961	53503961	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcatgcccccacagcccctAgtcaatgctgtccctgtgca	8	18	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53503961	G	G	53503961	2	3	208	1	0	0	0	0	0	0	0	1	13218	407	15	5		5	RBL2	16	53503961	Silent	SNP	A	TCGA-73-4670-01A-01D-1265-08	5781108	53503961	36850792	653	163995											
MT1G	4495	broad.mit.edu	37	chr16	56701272	56701272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcacttgcaggagctggCgcaggtgcaggagacacctg	15	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701272	A	A	56701272	3	1	208	1	0	0	0	0	1	0	0	0	9995	768	27	3	147	3	MT1G	16	56701272	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	3197311	56701272	33653481	654	163996											
SLC12A3	6559	broad.mit.edu	37	chr16	56906176	56906176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgaataatggagaaacGggccctgggcaaatcatttt	12	6	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56906176	T	T	56906176	1	4	208	0	1	0	0	0	0	0	0	0	14497	1131	39	1		1	SLC12A3	16	56906176	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	204904	56906176	33448577	655	163997											
CDH8	1006	broad.mit.edu	37	chr16	61687553	61687553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaacagagtagagttcgcCcagtctcttaaagcggggac	11	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61687553	A	A	61687553	3	1	208	1	0	0	0	0	1	0	0	0	3146	623	22	2	44	2	CDH8	16	61687553	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	4781377	61687553	28667200	656	163998											
CDH8	1006	broad.mit.edu	37	chr16	61854977	61854977	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacccttcctattgcagtGccaagaaccacatcttccgg	6	15	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61854977	T	T	61854977	2	4	208	1	0	0	0	0	0	0	0	1	3146	1306	46	3		3	CDH8	16	61854977	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	167424	61854977	28499776	657	163999											
CTCF	10664	broad.mit.edu	37	chr16	67654413	67654413	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgtattcatttacccacttCtcttagataatgatatggat	5	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67654413	T	T	67654413	1	4	208	0	1	0	0	0	0	0	0	0	4034	928	32	4		4	CTCF	16	67654413	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	5799436	67654413	22700340	658	164000											
PSKH1	5681	broad.mit.edu	37	chr16	67961404	67961405	+	Frame_Shift_Ins	INS	-	G	G													cccagaacctccttaaacgtINSgcctcctcgcgctgccagag							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67961405	G	G	67961404	7	5	208	1	0	1	1	0	0	0	0	0	12770	1683	59	0	1140	0	PSKH1	16	67961404	Frame_Shift_Ins	INS	-	TCGA-73-4670-01A-01D-1265-08	306991	67961404	22393349	659	164001											
HYDIN	54768	broad.mit.edu	37	chr16	70871619	70871619	+	Frame_Shift_Del	DEL	T	-	-													tttggtacccttccctttgaTttcgactgtttgttgtgaga							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70871619	-	-	70871619	7	5	208	1	0	1	0	1	0	0	0	0	7537	1493	52	0	2189	0	HYDIN	16	70871619	Frame_Shift_Del	DEL	T	TCGA-73-4670-01A-01D-1265-08	2910215	70871619	19483134	660	164002											
MLKL	197259	broad.mit.edu	37	chr16	74719313	74719313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgttctttaaaaaaatgCaacacattaaaacacaggag	6	6	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74719313	A	A	74719313	1	1	208	0	1	0	0	0	0	0	0	0	9712	725	25	3		3	MLKL	16	74719313	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3847694	74719313	15635440	661	164003											
OR3A2	4995	broad.mit.edu	37	chr17	3181334	3181334	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcagggtttctgaggctgTagataagagggttcagcata	13	6	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3181334	C	C	3181334	3	2	208	1	0	0	0	0	1	0	0	0	11132	1638	57	5	73	5	OR3A2	17	3181334	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08		3181334	78013876	662	164004											
CAMKK1	84254	broad.mit.edu	37	chr17	3785657	3785657	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggatattctgggcctggttCtgcagggctgggcaagggaa	17	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3785657	T	T	3785657	1	4	208	0	1	0	0	0	0	0	0	0	2632	912	32	4		4	CAMKK1	17	3785657	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	604323	3785657	77409553	663	164005											
MYBBP1A	10514	broad.mit.edu	37	chr17	4451462	4451462	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggcctggcgctgctgcGcagtgaagggtgtcacggtg	17	12	1	1	rs139169505	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4451462	A	A	4451462	3	1	208	1	0	0	0	0	1	0	0	0	10102	1087	38	4	2386	4	MYBBP1A	17	4451462	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	665805	4451462	76743748	664	164006											
MINK1	50488	broad.mit.edu	37	chr17	4796591	4796591	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccctcccagagctataagcGagcaattggtgaggttagtg	12	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4796591	A	A	4796591	1	1	208	0	1	0	0	0	0	0	0	0	9680	1058	37	4		4	MINK1	17	4796591	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	345129	4796591	76398619	665	164007											
WSCD1	23302	broad.mit.edu	37	chr17	5993695	5993695	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgttactgcgggaaccgGctgccagcggtgagcgtggg	19	9	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5993695	T	T	5993695	2	4	208	1	0	0	0	0	0	0	0	1	17533	1190	42	3		3	WSCD1	17	5993695	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	1197104	5993695	75201515	666	164008											
PITPNM3	83394	broad.mit.edu	37	chr17	6386989	6386989	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgccttgcaggacgggtcCccggcacccgtgtccaggat	14	15	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6386989	T	T	6386989	2	4	208	1	0	0	0	0	0	0	0	1	12047	610	22	4		4	PITPNM3	17	6386989	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	393294	6386989	74808221	667	164009											
TP53	7157	broad.mit.edu	37	chr17	7577610	7577610	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtacagtcagagccaaccTaggagataacacaggcccaa	10	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7577610	C	C	7577610	5	2	208	1	0	0	0	0	0	0	1	0	16505	1536	53	5	619	5	TP53	17	7577610	Splice_Site	SNP	T	TCGA-73-4670-01A-01D-1265-08	1190621	7577610	73617600	668	164010											
NDEL1	81565	broad.mit.edu	37	chr17	8347562	8347562	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctaatttgttaagtttgtCtttaatatttcacaggcttt	5	6	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8347562	G	G	8347562	1	3	208	0	1	0	0	0	0	0	0	0	10339	928	32	4		4	NDEL1	17	8347562	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	769952	8347562	72847648	669	164011											
GAS7	8522	broad.mit.edu	37	chr17	9822936	9822936	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgtccacacatccctgccCgcttaccaatgtggtggtca	8	15	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9822936	G	G	9822936	1	3	208	0	1	0	0	0	0	0	0	0	6312	667	23	4		4	GAS7	17	9822936	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1475374	9822936	71372274	670	164012											
MYH8	4626	broad.mit.edu	37	chr17	10305148	10305148	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tagagtctgttacttattttGaaacttggtgttttttttgc	8	4	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10305148	A	A	10305148	1	1	208	0	1	0	0	0	0	0	0	0	10135	1305	45	4		4	MYH8	17	10305148	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	482212	10305148	70890062	671	164013											
MYH2	4620	broad.mit.edu	37	chr17	10439914	10439914	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctttcttggcccctccaCcagctccctctgaagaaaaa	5	17	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10439914	T	T	10439914	3	4	208	1	0	0	0	0	1	0	0	0	10129	507	18	4	4014	4	MYH2	17	10439914	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	134766	10439914	70755296	672	164014											
MYOCD	93649	broad.mit.edu	37	chr17	12666290	12666290	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtggtgagcggtgaccaggGaagcgtggccatcttctgta	17	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12666290	A	A	12666290	1	1	208	0	1	0	0	0	0	0	0	0	10181	1189	41	4		4	MYOCD	17	12666290	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2226376	12666290	68528920	673	164015											
RICH2	9912	broad.mit.edu	37	chr17	12876534	12876534	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaccctggaccatggagagaGaccccttacagaaagacaac	10	12	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12876534	C	C	12876534	1	2	208	0	1	0	0	0	0	0	0	0	13466	957	33	4		4	RICH2	17	12876534	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	210244	12876534	68318676	674	164016											
NOS2	4843	broad.mit.edu	37	chr17	26093726	26093726	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccacccttggggcatcctGctgaggtggccgttgggttt	14	12	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26093726	C	C	26093726	1	2	208	0	1	0	0	0	0	0	0	0	10638	1334	46	4		4	NOS2	17	26093726	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	13217192	26093726	55101484	675	164017											
NOS2	4843	broad.mit.edu	37	chr17	26101545	26101545	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaggggccggttggccGcagggctcccagagagtgcc	19	11	0	2	rs28999397		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26101545	T	T	26101545	1	4	208	0	1	0	0	0	0	0	0	0	10638	1102	38	3		3	NOS2	17	26101545	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	7819	26101545	55093665	676	164018											
UTP6	55813	broad.mit.edu	37	chr17	30192423	30192423	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actctctcaaagctctctcaTaatattctcttatgttcgcc	3	13	5	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30192423	A	A	30192423	3	1	208	1	0	0	0	0	1	0	0	0	17229	1406	49	5	203	5	UTP6	17	30192423	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	4090878	30192423	51002787	677	164019											
UNC45B	146862	broad.mit.edu	37	chr17	33507865	33507865	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agattatagcccccctccctGtaggggccctgagagaaaga	11	12	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33507865	T	T	33507865	1	4	208	0	1	0	0	0	0	0	0	0	17115	1392	48	3		3	UNC45B	17	33507865	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3315442	33507865	47687345	678	164020											
THRA	7067	broad.mit.edu	37	chr17	38245466	38245466	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttccctcacagaccgctcGggcctgctgtgtgtggacaa	11	14	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38245466	C	C	38245466	2	2	208	1	0	0	0	0	0	0	0	1	15996	1103	39	4		4	THRA	17	38245466	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	4737601	38245466	42949744	679	164021											
TOP2A	7153	broad.mit.edu	37	chr17	38552628	38552628	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacgcggagaaggcaaaacTtcagccatttgtgttttttt	9	9	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38552628	G	G	38552628	3	3	208	1	0	0	0	0	1	0	0	0	16489	1606	56	5	1000	5	TOP2A	17	38552628	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	307162	38552628	42642582	680	164022											
KRT13	3860	broad.mit.edu	37	chr17	39661336	39661336	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagctcttcaatggtcttgTagtaggggctgtagtcccgc	14	9	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39661336	C	C	39661336	3	2	208	1	0	0	0	0	1	0	0	0	8521	1638	57	5	941	5	KRT13	17	39661336	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1108708	39661336	41533874	681	164023											
AOC2	314	broad.mit.edu	37	chr17	40996621	40996621	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagcagctgttagaattctGatttcagctctcagcatcca	9	10	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40996621	A	A	40996621	1	1	208	0	1	0	0	0	0	0	0	0	729	1305	45	4		4	AOC2	17	40996621	5'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	1335285	40996621	40198589	682	164024											
SLC4A1	6521	broad.mit.edu	37	chr17	42336630	42336630	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaggaagcgtataggcacCggcagctccaccgcctccag	12	14	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42336630	A	A	42336630	2	1	208	1	0	0	0	0	0	0	0	1	14764	639	23	1		1	SLC4A1	17	42336630	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	1340009	42336630	38858580	683	164025											
ITGA2B	3674	broad.mit.edu	37	chr17	42457495	42457495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctggcggggcttctgccGgtccagctgcagctcggcat	15	15	1	0	rs143967758	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42457495	A	A	42457495	3	1	208	1	0	0	0	0	1	0	0	0	7946	1115	39	4	1548	4	ITGA2B	17	42457495	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	120865	42457495	38737715	684	164026											
CRHR1	1394	broad.mit.edu	37	chr17	43911574	43911574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccccagggtggcccctcCcacctgtccactcccacagt	9	20	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43911574	A	A	43911574	1	1	208	0	1	0	0	0	0	0	0	0	3903	638	22	2		2	CRHR1	17	43911574	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1454079	43911574	37283636	685	164027											
TBKBP1	9755	broad.mit.edu	37	chr17	45788015	45788015	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccagccccacccactggcTgtttctccgtcctctcctat	5	20	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45788015	C	C	45788015	1	2	208	0	1	0	0	0	0	0	0	0	15760	1595	55	5		5	TBKBP1	17	45788015	3'UTR	SNP	T	TCGA-73-4670-01A-01D-1265-08	1876441	45788015	35407195	686	164028											
IGF2BP1	10642	broad.mit.edu	37	chr17	47120770	47120770	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggtgtgctgactcttccTcctcatctttcttccccagc	7	16	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47120770	C	C	47120770	1	2	208	0	1	0	0	0	0	0	0	0	7643	1566	54	5		5	IGF2BP1	17	47120770	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1332755	47120770	34074440	687	164029											
SPATA20	64847	broad.mit.edu	37	chr17	48628452	48628452	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcttggatgtggaggccGtgcggaccttgctcaattca	14	9	2	0	rs146367642	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48628452	T	T	48628452	3	4	208	1	0	0	0	0	1	0	0	0	15122	1145	40	3	1523	3	SPATA20	17	48628452	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1507682	48628452	32566758	688	164030											
CACNA1G	8913	broad.mit.edu	37	chr17	48685363	48685363	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagaagcgcctacgaagacTggagaaaaagagaaggagta	15	5	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48685363	C	C	48685363	3	2	208	1	0	0	0	0	1	0	0	0	2570	1580	55	5	5032	5	CACNA1G	17	48685363	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	56911	48685363	32509847	689	164031											
BZRAP1	9256	broad.mit.edu	37	chr17	56383243	56383243	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagctgtggaaagaatgtgCctgtgagccccctcccaccc	10	15	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56383243	A	A	56383243	1	1	208	0	1	0	0	0	0	0	0	0	1587	754	26	3		3	BZRAP1	17	56383243	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	7697880	56383243	24811967	690	164032											
TLK2	11011	broad.mit.edu	37	chr17	60601556	60601556	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttatctgaagcatagtaCtgttttgaattattcatatc	5	7	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60601556	A	A	60601556	1	1	208	0	1	0	0	0	0	0	0	0	16067	580	20	3		3	TLK2	17	60601556	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	4218313	60601556	20593654	691	164033											
MRC2	9902	broad.mit.edu	37	chr17	60767343	60767343	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagccggggggctgtaCctacgtagatgtggacgggg	19	9	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60767343	T	T	60767343	3	4	208	1	0	0	0	0	1	0	0	0	9852	507	18	4	3760	4	MRC2	17	60767343	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	165787	60767343	20427867	692	164034											
MARCH10	162333	broad.mit.edu	37	chr17	60821816	60821816	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgctctcgggctgtgCgattctgggctgactgtaaa	13	10	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60821816	T	T	60821816	2	4	208	1	0	0	0	0	0	0	0	1	9391	755	27	4		4	MARCH10	17	60821816	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	54473	60821816	20373394	693	164035											
KCNH6	81033	broad.mit.edu	37	chr17	61613303	61613303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagcctcgggcccctcgGtgcaggacaagtatgtcaca	11	15	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61613303	T	T	61613303	3	4	208	1	0	0	0	0	1	0	0	0	8106	1261	44	3	1397	3	KCNH6	17	61613303	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	791487	61613303	19581907	694	164036											
LRRC37A3	374819	broad.mit.edu	37	chr17	62855491	62855491	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagtcccagattcttctgTgtgggcactttcctgggata	13	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62855491	C	C	62855491	1	2	208	0	1	0	0	0	0	0	0	0	9080	1711	59	5		5	LRRC37A3	17	62855491	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1242188	62855491	18339719	695	164037											
ABCA9	10350	broad.mit.edu	37	chr17	67012630	67012630	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagttactgataatataAtaagtcccaagcactgaatg	6	7	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67012630	G	G	67012630	1	3	208	0	1	0	0	0	0	0	0	0	39	116	4	5		5	ABCA9	17	67012630	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	4157139	67012630	14182580	696	164038											
ABCA10	10349	broad.mit.edu	37	chr17	67210778	67210778	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttaagttacaaataaacaGatattaatacatgttttaag	4	4	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67210778	T	T	67210778	1	4	208	0	1	0	0	0	0	0	0	0	29	957	33	3		3	ABCA10	17	67210778	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	198148	67210778	13984432	697	164039											
KCNJ16	3773	broad.mit.edu	37	chr17	68128830	68128830	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagctttgcctcatgtGgcgcattggtgattttcggc	14	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68128830	T	T	68128830	3	4	208	1	0	0	0	0	1	0	0	0	8120	1357	47	2	604	2	KCNJ16	17	68128830	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	918052	68128830	13066380	698	164040											
SAP30BP	29115	broad.mit.edu	37	chr17	73695961	73695961	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcacttgcaagtaagcatgAgactcggctactgaggtcgg	12	9	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73695961	C	C	73695961	1	2	208	0	1	0	0	0	0	0	0	0	13946	319	11	5		5	SAP30BP	17	73695961	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	5567131	73695961	7499249	699	164041											
UNC13D	201294	broad.mit.edu	37	chr17	73837068	73837071	+	Frame_Shift_Del	DEL	ATGT	-	-													gatgaaagctcgcattggtgAtgtcctcaaactccctgtat							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73837071	-	-	73837068	7	5	208	1	0	1	0	1	0	0	0	0	17113	333	12	0	2792	0	UNC13D	17	73837068	Frame_Shift_Del	DEL	ATGT	TCGA-73-4670-01A-01D-1265-08	141107	73837068	7358142	700	164042											
TRIM65	201292	broad.mit.edu	37	chr17	73887249	73887249	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgagtggtctgacgcgcGcacctcccagtagtggtgcc	13	15	1	1	rs150794170		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73887249	A	A	73887249	3	1	208	1	0	0	0	0	1	0	0	0	16664	1087	38	4	392	4	TRIM65	17	73887249	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	50181	73887249	7307961	701	164043											
ENGASE	64772	broad.mit.edu	37	chr17	77082391	77082391	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttccgggtacctcaggccgAgtggggcagggcagttctgc	17	11	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77082391	T	T	77082391	3	4	208	1	0	0	0	0	1	0	0	0	5160	304	11	5	2246	5	ENGASE	17	77082391	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	3195142	77082391	4112819	702	164044											
SLC26A11	284129	broad.mit.edu	37	chr17	78219001	78219001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcctccccaggtctcaCcaacatgttgggctccctcg	8	18	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78219001	A	A	78219001	3	1	208	1	0	0	0	0	1	0	0	0	14630	507	18	3	1077	3	SLC26A11	17	78219001	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1136610	78219001	2976209	703	164045											
C17orf56	146705	broad.mit.edu	37	chr17	79202733	79202733	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggccatcgggtcaggCgttcaggaacgcgaaagctg	16	11	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79202733	A	A	79202733	3	1	208	1	0	0	0	0	1	0	0	0	1880	768	27	3	8	3	C17orf56	17	79202733	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	983732	79202733	1992477	704	164046											
SLC38A10	124565	broad.mit.edu	37	chr17	79257314	79257314	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgatcatgctgcacagggaCggggggtacgggaaatgcca	16	10	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79257314	T	T	79257314	1	4	208	0	1	0	0	0	0	0	0	0	14716	551	19	4		4	SLC38A10	17	79257314	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	54581	79257314	1937896	705	164047											
B3GNTL1	146712	broad.mit.edu	37	chr17	80962871	80962871	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatggcatgtgagtgaaggCgaggacagaaggaccacggc	17	7	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80962871	T	T	80962871	1	4	208	0	1	0	0	0	0	0	0	0	1270	783	27	4		4	B3GNTL1	17	80962871	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1705557	80962871	232339	706	164048											
KIAA0802	23255	broad.mit.edu	37	chr18	8784097	8784097	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaagtcctggtgccggGggtggggcccccctgcagga	19	12	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8784097	T	T	8784097	2	4	208	1	0	0	0	0	0	0	0	1	8264	1219	43	2		2	KIAA0802	18	8784097	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08		8784097	69293151	707	164049											
FAM38B	63895	broad.mit.edu	37	chr18	10696587	10696587	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacttgtttcaggaagggcaGgatggcagaaatgaccagac	13	8	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10696587	C	C	10696587	1	2	208	0	1	0	0	0	0	0	0	0	5606	1015	35	4		4	FAM38B	18	10696587	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1912490	10696587	67380661	708	164050											
MC5R	4161	broad.mit.edu	37	chr18	13826676	13826676	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcagccaagagatgcggaaGacctttaaggagattatttg	12	7	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13826676	T	T	13826676	3	4	208	1	0	0	0	0	1	0	0	0	9460	933	33	3	914	3	MC5R	18	13826676	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	3130089	13826676	64250572	709	164051											
DSG4	147409	broad.mit.edu	37	chr18	28991430	28991430	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtaatgccctcacagtcaCacataaaatcgtcttgagat	7	10	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28991430	G	G	28991430	1	3	208	0	1	0	0	0	0	0	0	0	4819	493	17	4		4	DSG4	18	28991430	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	15164754	28991430	49085818	710	164052											
DSG4	147409	broad.mit.edu	37	chr18	28993427	28993427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagcggcaatattttagtaGggccagaaattcaagtgatg	12	5	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28993427	C	C	28993427	3	2	208	1	0	0	0	0	1	0	0	0	4819	1000	35	4	3175	4	DSG4	18	28993427	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1997	28993427	49083821	711	164053											
DSG3	1830	broad.mit.edu	37	chr18	29027857	29027857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaatgatggggctcttccCcagaactacaggggctctgg	13	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29027857	A	A	29027857	3	1	208	1	0	0	0	0	1	0	0	0	4818	623	22	2	19	2	DSG3	18	29027857	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	34430	29027857	49049391	712	164054											
KLHL14	57565	broad.mit.edu	37	chr18	30275470	30275470	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccaacacgaacaagaagTtttccacctccacaacgcag	5	16	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30275470	G	G	30275470	3	3	208	1	0	0	0	0	1	0	0	0	8441	1725	60	5	795	5	KLHL14	18	30275470	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1247613	30275470	47801778	713	164055											
PSTPIP2	9050	broad.mit.edu	37	chr18	43591063	43591063	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gattacatgatggtgggagcTgagctgaggagtataatgaa	15	3	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43591063	A	A	43591063	1	1	208	0	1	0	0	0	0	0	0	0	12828	1595	55	5		5	PSTPIP2	18	43591063	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	13315593	43591063	34486185	714	164056											
ST8SIA5	29906	broad.mit.edu	37	chr18	44260213	44260213	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacagagctccagcgccGcagtgaccagaatgaggccg	12	15	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44260213	T	T	44260213	3	4	208	1	0	0	0	0	1	0	0	0	15353	1087	38	3	211	3	ST8SIA5	18	44260213	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	669150	44260213	33817035	715	164057											
MYO5B	4645	broad.mit.edu	37	chr18	47527658	47527658	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggatgccagcaccttctcTtcgatgttggtttcactggc	10	12	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47527658	G	G	47527658	3	3	208	1	0	0	0	0	1	0	0	0	10173	1606	56	5	5111	5	MYO5B	18	47527658	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	3267445	47527658	30549590	716	164058											
NARS	4677	broad.mit.edu	37	chr18	55274256	55274256	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgttcttccattaaccactTaatatatcagttggtttttt	4	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55274256	A	A	55274256	1	1	208	0	1	0	0	0	0	0	0	0	10264	1769	61	5		5	NARS	18	55274256	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	7746598	55274256	22802992	717	164059											
NETO1	81832	broad.mit.edu	37	chr18	70532270	70532270	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcttataatatccattaGtaaattaatttttaaatgtt	2	4	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70532270	T	T	70532270	1	4	208	0	1	0	0	0	0	0	0	0	10434	1044	36	3		3	NETO1	18	70532270	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	15258014	70532270	7544978	718	164060											
PTBP1	5725	broad.mit.edu	37	chr19	804728	804728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcccatcaccgccaggGcaggtcggctgctattgctg	14	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	804728	T	T	804728	1	4	208	0	1	0	0	0	0	0	0	0	12831	1218	42	3		3	PTBP1	19	804728	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08		804728	58324255	719	164061											
MED16	10025	broad.mit.edu	37	chr19	881704	881704	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catttgagaattgtgggctgTttgtcgccaactgaaaaatc	10	7	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	881704	C	C	881704	2	2	208	1	0	0	0	0	0	0	0	1	9527	1722	60	5		5	MED16	19	881704	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	76976	881704	58247279	720	164062											
STK11	6794	broad.mit.edu	37	chr19	1221228	1221228	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagctacaacatcaccacgGgtctgtaccccttcgaaggg	10	13	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1221228	C	C	1221228	3	2	208	1	0	0	0	0	1	0	0	0	15405	1232	43	4	773	4	STK11	19	1221228	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	339524	1221228	57907755	721	164063											
THOP1	7064	broad.mit.edu	37	chr19	2785690	2785690	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgcaggtaccgactacccCgctcgccggacccgggcgtc	12	20	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2785690	G	G	2785690	1	3	208	0	1	0	0	0	0	0	0	0	15994	667	23	4		4	THOP1	19	2785690	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1564462	2785690	56343293	722	164064											
GIPC3	126326	broad.mit.edu	37	chr19	3586737	3586737	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagcaactgccccccccactCtgggtcgacgtgggttctgc	11	17	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3586737	G	G	3586737	1	3	208	0	1	0	0	0	0	0	0	0	6458	928	32	4		4	GIPC3	19	3586737	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	801047	3586737	55542246	723	164065											
MUC16	94025	broad.mit.edu	37	chr19	9076248	9076248	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccagtcaagagtggacAgagaatcaaacagaaaagtg	11	7	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9076248	T	T	9076248	3	4	208	1	0	0	0	0	1	0	0	0	10067	188	7	5	32653	5	MUC16	19	9076248	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	5489511	9076248	50052735	724	164066											
KEAP1	9817	broad.mit.edu	37	chr19	10610343	10610343	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggataccctcaatggacaCcacctccatgccctgctccc	7	18	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10610343	A	A	10610343	3	1	208	1	0	0	0	0	1	0	0	0	8211	507	18	3	1527	3	KEAP1	19	10610343	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1534095	10610343	48518640	725	164067											
PKN1	5585	broad.mit.edu	37	chr19	14581142	14581142	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaccccgcccctgtgtgtctCggatctcattggaacctgcg	11	15	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14581142	T	T	14581142	1	4	208	0	1	0	0	0	0	0	0	0	12074	899	31	4		4	PKN1	19	14581142	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3970799	14581142	44547841	726	164068											
CIB3	117286	broad.mit.edu	37	chr19	16275587	16275587	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttccagggacagccgccCatcatggtctccatcagcct	8	16	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16275587	T	T	16275587	3	4	208	1	0	0	0	0	1	0	0	0	3453	594	21	4	87	4	CIB3	19	16275587	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1694445	16275587	42853396	727	164069											
NWD1	284434	broad.mit.edu	37	chr19	16885521	16885521	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccttccatccatccactcAcccatccattcatccattca	0	19	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16885521	T	T	16885521	1	4	208	0	1	0	0	0	0	0	0	0	10876	174	6	5		5	NWD1	19	16885521	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	609934	16885521	42243462	728	164070											
ISYNA1	51477	broad.mit.edu	37	chr19	18546132	18546132	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgcattgaccaccgggctGccgggcggcactagtggcgc	16	14	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18546132	T	T	18546132	2	4	208	1	0	0	0	0	0	0	0	1	7937	1306	46	3		3	ISYNA1	19	18546132	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	1660611	18546132	40582851	729	164071											
ZNF492	57615	broad.mit.edu	37	chr19	22846654	22846654	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagcagggcaaaaaaaaTtatttccaaaaagtgatact	6	7	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22846654	A	A	22846654	3	1	208	1	0	0	0	0	1	0	0	0	18070	1490	52	5	193	5	ZNF492	19	22846654	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	4300522	22846654	36282329	730	164072											
GRAMD1A	57655	broad.mit.edu	37	chr19	35506986	35506986	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggggcaaggcgaggtggtGaaaagcaatgtctgtcagac	17	6	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35506986	T	T	35506986	1	4	208	0	1	0	0	0	0	0	0	0	6813	1305	45	3		3	GRAMD1A	19	35506986	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	12660332	35506986	23621997	731	164073											
NPHS1	4868	broad.mit.edu	37	chr19	36340263	36340263	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgacagggggtcctggagGgactgggggatatcagtcac	18	7	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36340263	T	T	36340263	3	4	208	1	0	0	0	0	1	0	0	0	10677	1232	43	2	3102	2	NPHS1	19	36340263	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	833277	36340263	22788720	732	164074											
RPS16	6217	broad.mit.edu	37	chr19	39926172	39926172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgctgatgccagccccccCagctttcaagagctacaaca	8	15	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39926172	A	A	39926172	1	1	208	0	1	0	0	0	0	0	0	0	13738	609	21	2		2	RPS16	19	39926172	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3585909	39926172	19202811	733	164075											
CEACAM5	1048	broad.mit.edu	37	chr19	42213504	42213505	+	Intron	DEL	GG	-	-													cactcactcactccagggctGggggatgaagagacctgctc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	42213505	-	-	42213504	6	5	208	0	1	1	0	1	0	0	0	0	3225	1363	47	0		0	CEACAM5	19	42213504	Intron	DEL	GG	TCGA-73-4670-01A-01D-1265-08	2287332	42213504	16915479	734	164076											
GRIK5	2901	broad.mit.edu	37	chr19	42525511	42525511	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgatctccgagccctgctGcatgaagccccccacgggaa	10	16	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42525511	T	T	42525511	3	4	208	1	0	0	0	0	1	0	0	0	6843	1328	46	3	1153	3	GRIK5	19	42525511	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	312007	42525511	16603472	735	164077											
PSG1	5669	broad.mit.edu	37	chr19	43373202	43373202	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcgctgtgtggataacagAgagaagattgtcctgtgtgg	14	6	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43373202	C	C	43373202	1	2	208	0	1	0	0	0	0	0	0	0	12759	319	11	5		5	PSG1	19	43373202	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	847691	43373202	15755781	736	164078											
PSG1	5669	broad.mit.edu	37	chr19	43376282	43376282	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caatcagaattggcatttccCacctctcagcccacccaagt	5	16	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43376282	G	G	43376282	1	3	208	0	1	0	0	0	0	0	0	0	12759	609	21	4		4	PSG1	19	43376282	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3080	43376282	15752701	737	164079											
PSG6	5675	broad.mit.edu	37	chr19	43520013	43520013	+	Intron	DEL	G	-	-													gtttcatttctcgtgacactGggtagaatgaggatcctgtt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43520013	-	-	43520013	6	5	208	0	1	1	0	1	0	0	0	0	12765	1363	47	0		0	PSG6	19	43520013	Intron	DEL	G	TCGA-73-4670-01A-01D-1265-08	143731	43520013	15608970	738	164080											
PSG5	5673	broad.mit.edu	37	chr19	43674209	43674209	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaaggccatcatacctGccagtcttcctgaaatacag	8	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43674209	T	T	43674209	1	4	208	0	1	0	0	0	0	0	0	0	12764	1334	46	3		3	PSG5	19	43674209	3'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	154196	43674209	15454774	739	164081											
PSG9	5678	broad.mit.edu	37	chr19	43757688	43757688	+	3'UTR	DEL	T	-	-													tttagtccaataacattgagTttttttcttctttgtcttga							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43757688	-	-	43757688	6	5	208	0	1	1	0	1	0	0	0	0	12768	1740	60	0		0	PSG9	19	43757688	3'UTR	DEL	T	TCGA-73-4670-01A-01D-1265-08	83479	43757688	15371295	740	164082											
TOMM40	10452	broad.mit.edu	37	chr19	45395768	45395768	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcgtccccgccgtccccCtccctgcatctgcacactcg	7	21	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45395768	T	T	45395768	1	4	208	0	1	0	0	0	0	0	0	0	16481	696	24	4		4	TOMM40	19	45395768	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1638080	45395768	13733215	741	164083											
ERCC2	2068	broad.mit.edu	37	chr19	45856279	45856279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgggagcagacagcagagCgggcaggtgttccagagagc	18	10	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45856279	A	A	45856279	1	1	208	0	1	0	0	0	0	0	0	0	5255	783	27	3		3	ERCC2	19	45856279	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	460511	45856279	13272704	742	164084											
EML2	24139	broad.mit.edu	37	chr19	46119820	46119820	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggtacgccccgtctgGgggagggggaggggggctat	22	9	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46119820	A	A	46119820	1	1	208	0	1	0	0	0	0	0	0	0	5139	1247	43	4		4	EML2	19	46119820	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	263541	46119820	13009163	743	164085											
GLTSCR2	29997	broad.mit.edu	37	chr19	48248739	48248739	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaggaagtacgtcacggaAgagggtgggaaatctgcgcg	16	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48248739	G	G	48248739	1	3	208	0	1	0	0	0	0	0	0	0	6539	87	3	5		5	GLTSCR2	19	48248739	5'Flank	SNP	A	TCGA-73-4670-01A-01D-1265-08	2128919	48248739	10880244	744	164086											
SCAF1	58506	broad.mit.edu	37	chr19	50148669	50148669	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacctgcccaatgataaagGtatggcggcttccggttcct	12	11	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50148669	A	A	50148669	5	1	208	1	0	0	0	0	0	0	1	0	13980	1275	44	4	173	4	SCAF1	19	50148669	Splice_Site	SNP	G	TCGA-73-4670-01A-01D-1265-08	1899930	50148669	8980314	745	164087											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918829	51918829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccctttcctacctgtcctGtttgcttgggaaaccatcac	6	15	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51918829	T	T	51918829	3	4	208	1	0	0	0	0	1	0	0	0	14419	1368	48	3	1052	3	SIGLEC10	19	51918829	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1770160	51918829	7210154	746	164088											
ZNF761	388561	broad.mit.edu	37	chr19	53950358	53950358	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagacgggaccatatttcCcagggtgaggtcgcctttgt	13	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53950358	T	T	53950358	1	4	208	0	1	0	0	0	0	0	0	0	18265	638	22	4		4	ZNF761	19	53950358	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2031529	53950358	5178625	747	164089											
CACNG8	59283	broad.mit.edu	37	chr19	54483032	54483032	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaactgtcgggaggcgcCgcgagatggggggccgggaa	20	9	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54483032	T	T	54483032	1	4	208	0	1	0	0	0	0	0	0	0	2589	667	23	4		4	CACNG8	19	54483032	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	532674	54483032	4645951	748	164090											
NLRP7	199713	broad.mit.edu	37	chr19	55447575	55447575	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttcctagatcccccagcAacacggtgcagtggactcca	8	14	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55447575	T	T	55447575	1	4	208	0	1	0	0	0	0	0	0	0	10577	145	5	5		5	NLRP7	19	55447575	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	964543	55447575	3681408	749	164091											
C19orf51	352909	broad.mit.edu	37	chr19	55671280	55671280	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcttacccacaggccacatAgaggagctggaatcggccgt	12	13	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55671280	G	G	55671280	3	3	208	1	0	0	0	0	1	0	0	0	1952	420	15	5	487	5	C19orf51	19	55671280	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	223705	55671280	3457703	750	164092											
ZNF582	147948	broad.mit.edu	37	chr19	56895924	56895924	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgattgaaggccttgccacAttccttacactgatagggtt	9	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56895924	T	T	56895924	3	4	208	1	0	0	0	0	1	0	0	0	18141	217	8	5	695	5	ZNF582	19	56895924	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	1224644	56895924	2233059	751	164093											
ZNF470	388566	broad.mit.edu	37	chr19	57081616	57081616	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agactttgattattagtgctActtggtttctcactacttct	6	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57081616	C	C	57081616	1	2	208	0	1	0	0	0	0	0	0	0	18056	406	14	5		5	ZNF470	19	57081616	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	185692	57081616	2047367	752	164094											
ZNF264	9422	broad.mit.edu	37	chr19	57723654	57723654	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcatccacactggagagAagccctttgagtgcctcgag	11	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57723654	T	T	57723654	4	4	208	1	0	0	0	0	0	1	0	0	17930	247	9	5	1203	5	ZNF264	19	57723654	Nonsense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	642038	57723654	1405329	753	164095											
ZNF587	84914	broad.mit.edu	37	chr19	58350457	58350457	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggaatctccttagtgagGctcagagatgcctgtaccgt	11	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58350457	T	T	58350457	1	4	208	0	1	0	0	0	0	0	0	0	18147	1218	42	3		3	ZNF587	19	58350457	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	626803	58350457	778526	754	164096											
ZNF587	84914	broad.mit.edu	37	chr19	58371214	58371214	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatttggcaataagcacagCgtgactatacatcagaggat	9	7	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58371214	A	A	58371214	3	1	208	1	0	0	0	0	1	0	0	0	18147	767	27	3	1444	3	ZNF587	19	58371214	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	20757	58371214	757769	755	164097											
PLCB1	23236	broad.mit.edu	37	chr20	8698258	8698258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctgatctgggggtctgGggaggggatctgaaagaggg	20	5	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8698258	T	T	8698258	1	4	208	0	1	0	0	0	0	0	0	0	12122	1247	43	2		2	PLCB1	20	8698258	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08		8698258	54327262	756	164098											
PLCB4	5332	broad.mit.edu	37	chr20	9365072	9365072	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttgcaggtgaggaactcaaGatggcaatttgttttttgtg	13	4	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9365072	T	T	9365072	1	4	208	0	1	0	0	0	0	0	0	0	12125	957	33	3		3	PLCB4	20	9365072	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	666814	9365072	53660448	757	164099											
ITCH	83737	broad.mit.edu	37	chr20	33065809	33065809	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctttattatgctgtagctAcagaatttcaaaaaacattt	4	7	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33065809	G	G	33065809	1	3	208	0	1	0	0	0	0	0	0	0	7938	406	14	5		5	ITCH	20	33065809	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	23700737	33065809	29959711	758	164100											
UQCC	55245	broad.mit.edu	37	chr20	33891883	33891883	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtactgtatctgcaaccagGggagggggaaggaggaagcg	19	6	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33891883	T	T	33891883	1	4	208	0	1	0	0	0	0	0	0	0	17141	1247	43	2		2	UQCC	20	33891883	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	826074	33891883	29133637	759	164101											
PHF20	51230	broad.mit.edu	37	chr20	34487409	34487409	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatttttccgcaaagccaAactgttgcactatcacatga	5	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34487409	T	T	34487409	3	4	208	1	0	0	0	0	1	0	0	0	11926	14	1	5	1434	5	PHF20	20	34487409	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	595526	34487409	28538111	760	164102											
LBP	3929	broad.mit.edu	37	chr20	36982965	36982965	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggcacttgaagatcattCtctggggaaccctgttgaga	11	9	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36982965	T	T	36982965	1	4	208	0	1	0	0	0	0	0	0	0	8723	928	32	4		4	LBP	20	36982965	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2495556	36982965	26042555	761	164103											
CHD6	84181	broad.mit.edu	37	chr20	40116400	40116401	+	Nonsense_Mutation	DNP	CC	AA	AA													atttaacaaactgaagagctCctccacagagttctgcaagg							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	40116401	AA	AA	40116400	4	1	208	1	0	0	0	0	0	1	0	0	3360	864	30	3	6337	3	CHD6	20	40116400	Nonsense_Mutation	DNP	CC	TCGA-73-4670-01A-01D-1265-08	3133435	40116400	22909120	762	164104											
CHD6	84181	broad.mit.edu	37	chr20	40120549	40120549	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacagtggtaaatctcacTgtcccaaggctggtttcaaa	10	9	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40120549	C	C	40120549	1	2	208	0	1	0	0	0	0	0	0	0	3360	1595	55	5		5	CHD6	20	40120549	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	4149	40120549	22904971	763	164105											
PTPRT	11122	broad.mit.edu	37	chr20	40748749	40748749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttattcccagagaagtGgcaaaggttaaatgagatat	10	5	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40748749	T	T	40748749	1	4	208	0	1	0	0	0	0	0	0	0	12920	1363	47	2		2	PTPRT	20	40748749	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	628200	40748749	22276771	764	164106											
PTPRT	11122	broad.mit.edu	37	chr20	40864946	40864946	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatgtccaaaatgggggAaaaagaaaagacaaacaaac	10	5	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40864946	G	G	40864946	1	3	208	0	1	0	0	0	0	0	0	0	12920	261	9	5		5	PTPRT	20	40864946	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	116197	40864946	22160574	765	164107											
L3MBTL	26013	broad.mit.edu	37	chr20	42163093	42163093	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttgggcaggaattctgtaGactgtttagaggtcaggggc	16	5	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42163093	T	T	42163093	1	4	208	0	1	0	0	0	0	0	0	0	8663	957	33	3		3	L3MBTL	20	42163093	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1298147	42163093	20862427	766	164108											
MYBL2	4605	broad.mit.edu	37	chr20	42338446	42338446	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctcccttctgtttcccccGagcccctgacttggacctgc	7	19	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42338446	T	T	42338446	1	4	208	0	1	0	0	0	0	0	0	0	10104	1073	37	3		3	MYBL2	20	42338446	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	175353	42338446	20687074	767	164109											
SEMG2	6407	broad.mit.edu	37	chr20	43835802	43835802	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtaagccttggggaaagcTgctcagacagctaataatct	12	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43835802	A	A	43835802	1	1	208	0	1	0	0	0	0	0	0	0	14158	1595	55	5		5	SEMG2	20	43835802	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1497356	43835802	19189718	768	164110											
SPINLW1	57119	broad.mit.edu	37	chr20	44166525	44166525	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagaccagccatcagtgaaCtaggagacagaggtagtgca	13	8	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44166525	G	G	44166525	1	3	208	0	1	0	0	0	0	0	0	0	15185	580	20	4		4	SPINLW1	20	44166525	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	330723	44166525	18858995	769	164111											
SPINT4	391253	broad.mit.edu	37	chr20	44351210	44351210	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgttatctaggtagtcCaggaaggtcttcctttcatg	11	7	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44351210	T	T	44351210	1	4	208	0	1	0	0	0	0	0	0	0	15188	609	21	4		4	SPINT4	20	44351210	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	184685	44351210	18674310	770	164112											
EYA2	2139	broad.mit.edu	37	chr20	45808416	45808416	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagatctttctaatacgaTgactacatctttatttcctt	3	11	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45808416	C	C	45808416	1	2	208	0	1	0	0	0	0	0	0	0	5372	1479	51	5		5	EYA2	20	45808416	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1457206	45808416	17217104	771	164113											
STAU1	6780	broad.mit.edu	37	chr20	47767976	47767976	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaaaagcaagaaagctacaGagcataaaatcttggaggca	9	6	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47767976	C	C	47767976	1	2	208	0	1	0	0	0	0	0	0	0	15390	957	33	4		4	STAU1	20	47767976	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1959560	47767976	15257544	772	164114											
NPEPL1	79716	broad.mit.edu	37	chr20	57288444	57288444	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgtcccaggaaatcccGtccctgagcggggatctcta	11	14	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57288444	T	T	57288444	1	4	208	0	1	0	0	0	0	0	0	0	10669	1160	40	3		3	NPEPL1	20	57288444	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	9520468	57288444	5737076	773	164115											
GNAS	2778	broad.mit.edu	37	chr20	57415374	57415374	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaacgcccaccaccgctcCggcgcccaggtattccctga	8	19	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57415374	T	T	57415374	2	4	208	1	0	0	0	0	0	0	0	1	6574	639	23	4		4	GNAS	20	57415374	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	126930	57415374	5610146	774	164116											
ZNF831	128611	broad.mit.edu	37	chr20	57768208	57768208	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgaacccactaagcatgggGagacggtggccaggagagga	16	9	0	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57768208	T	T	57768208	4	4	208	1	0	0	0	0	0	1	0	0	18314	1175	41	3	2136	3	ZNF831	20	57768208	Nonsense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	352834	57768208	5257312	775	164117											
EDN3	1908	broad.mit.edu	37	chr20	57899378	57899379	+	Intron	INS	-	A	A													ttcttttgccccctttccccINSaagacaggttgaagtcaagg							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57899379	A	A	57899378	6	5	208	0	1	1	1	0	0	0	0	0	4958	609	21	0		0	EDN3	20	57899378	Intron	INS	-	TCGA-73-4670-01A-01D-1265-08	131170	57899378	5126142	776	164118											
PHACTR3	116154	broad.mit.edu	37	chr20	58318346	58318346	+	Intron	DEL	G	-	-													aaaggcctggtgacaggcgcGggcaggctgtggctgggacc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58318346	-	-	58318346	6	5	208	0	1	1	0	1	0	0	0	0	11906	1131	39	0		0	PHACTR3	20	58318346	Intron	DEL	G	TCGA-73-4670-01A-01D-1265-08	418968	58318346	4707174	777	164119											
TPTE	7179	broad.mit.edu	37	chr21	10908760	10908760	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaccagcaaaagacttgcCattacaccttatacatagac	4	12	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10908760	A	A	10908760	1	1	208	0	1	0	0	0	0	0	0	0	16554	609	21	2		2	TPTE	21	10908760	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08		10908760	37221135	778	164120											
TPTE	7179	broad.mit.edu	37	chr21	10919995	10919995	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgcctgatcaccaaaGgagaggagtctaaaatgaaa	11	8	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10919995	A	A	10919995	1	1	208	0	1	0	0	0	0	0	0	0	16554	1015	35	4		4	TPTE	21	10919995	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	11235	10919995	37209900	779	164121											
TPTE	7179	broad.mit.edu	37	chr21	10942695	10942695	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatacaagtaaatcaacgGttaagtgtcacaaacctgta	7	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10942695	T	T	10942695	1	4	208	0	1	0	0	0	0	0	0	0	16554	1276	44	3		3	TPTE	21	10942695	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	22700	10942695	37187200	780	164122											
TPTE	7179	broad.mit.edu	37	chr21	10951294	10951295	+	Missense_Mutation	DNP	CC	AA	AA													aaatactcgaagaagaacatCcatgagaaaaaataaggcaa							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	10951295	AA	AA	10951294	3	1	208	1	0	0	0	0	1	0	0	0	16554	855	30	3	1297	3	TPTE	21	10951294	Missense_Mutation	DNP	CC	TCGA-73-4670-01A-01D-1265-08	8599	10951294	37178601	781	164123											
KRTAP19-2	337969	broad.mit.edu	37	chr21	31859729	31859729	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgccctagtagctcacgGtgtcagagatagtgagttgg	14	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31859729	T	T	31859729	1	4	208	0	1	0	0	0	0	0	0	0	8600	1276	44	3		3	KRTAP19-2	21	31859729	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	20908435	31859729	16270166	782	164124											
GART	2618	broad.mit.edu	37	chr21	34893159	34893159	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaaatacatatttgatAtaaatttcctcatctttcct	2	7	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34893159	G	G	34893159	1	3	208	0	1	0	0	0	0	0	0	0	6305	464	16	5		5	GART	21	34893159	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	3033430	34893159	13236736	783	164125											
TMPRSS3	64699	broad.mit.edu	37	chr21	43808470	43808470	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctttctttattgttatcctCtctgtgttttgcccatgggt	7	9	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43808470	A	A	43808470	1	1	208	0	1	0	0	0	0	0	0	0	16371	928	32	3		3	TMPRSS3	21	43808470	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	8915311	43808470	4321425	784	164126											
TXNRD2	10587	broad.mit.edu	37	chr22	19886634	19886634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacatgtaaagctgaggccCttattgaccaagtgcagtca	10	10	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19886634	A	A	19886634	1	1	208	0	1	0	0	0	0	0	0	0	16934	696	24	2		2	TXNRD2	22	19886634	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08		19886634	31417932	785	164127											
SEZ6L	23544	broad.mit.edu	37	chr22	26746977	26746977	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaacccatggtcatccAgaggtctgacgtcctcttgg	10	13	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26746977	T	T	26746977	1	4	208	0	1	0	0	0	0	0	0	0	14256	203	7	5		5	SEZ6L	22	26746977	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	6860343	26746977	24557589	786	164128											
MN1	4330	broad.mit.edu	37	chr22	28196355	28196355	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccatgttcatgcccaagatCgggggttcgcccagcgcgct	12	14	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28196355	A	A	28196355	2	1	208	1	0	0	0	0	0	0	0	1	9767	871	31	3		3	MN1	22	28196355	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	1449378	28196355	23108211	787	164129											
RFPL2	10739	broad.mit.edu	37	chr22	32586720	32586720	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagtctacccacccaagtaAttttcttaccctgttttttg	4	11	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32586720	C	C	32586720	1	2	208	0	1	0	0	0	0	0	0	0	13362	116	4	5		5	RFPL2	22	32586720	3'UTR	SNP	A	TCGA-73-4670-01A-01D-1265-08	4390365	32586720	18717846	788	164130											
SUN2	25777	broad.mit.edu	37	chr22	39136041	39136041	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttagctggatagcagggaTagggtaggagggaggccact	18	6	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39136041	C	C	39136041	1	2	208	0	1	0	0	0	0	0	0	0	15510	1421	49	5		5	SUN2	22	39136041	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	6549321	39136041	12168525	789	164131											
APOBEC3B	9582	broad.mit.edu	37	chr22	39387544	39387544	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgcgcatcttcgctgccCgcatctatgattacgacccc	8	16	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39387544	A	A	39387544	3	1	208	1	0	0	0	0	1	0	0	0	792	652	23	1	953	1	APOBEC3B	22	39387544	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	251503	39387544	11917022	790	164132											
APOBEC3F	200316	broad.mit.edu	37	chr22	39440105	39440105	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtgcccaggtctttcatCagagccccatttcaagtgct	9	13	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39440105	T	T	39440105	1	4	208	0	1	0	0	0	0	0	0	0	795	816	29	4		4	APOBEC3F	22	39440105	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	52561	39440105	11864461	791	164133											
CACNA1I	8911	broad.mit.edu	37	chr22	40055905	40055905	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccccacagggtctgcgaaaGactgggcgagggagaggtgg	18	10	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40055905	C	C	40055905	1	2	208	0	1	0	0	0	0	0	0	0	2572	957	33	4		4	CACNA1I	22	40055905	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	615800	40055905	11248661	792	164134											
ARFGAP3	26286	broad.mit.edu	37	chr22	43218490	43218490	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagctaacatttcctaagGgttaggacctgccaggcact	9	11	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43218490	A	A	43218490	1	1	208	0	1	0	0	0	0	0	0	0	853	1247	43	4		4	ARFGAP3	22	43218490	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3162585	43218490	8086076	793	164135											
PPARA	5465	broad.mit.edu	37	chr22	46611143	46611143	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcgtggacgagtctccCagtggagcattgaacatcga	14	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46611143	T	T	46611143	2	4	208	1	0	0	0	0	0	0	0	1	12393	581	21	4		4	PPARA	22	46611143	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	3392653	46611143	4693423	794	164136											
MXRA5	25878	broad.mit.edu	37	chrX	3242878	3242878	+	Frame_Shift_Del	DEL	G	-	-													tgctcctgttctgtctcagaGgggactctattgaaggcttc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3242878	-	-	3242878	7	5	208	1	0	1	0	1	0	0	0	0	10097	1000	35	0	7650	0	MXRA5	23	3242878	Frame_Shift_Del	DEL	G	TCGA-73-4670-01A-01D-1265-08		3242878	152027682	795	164137											
ARHGAP6	395	broad.mit.edu	37	chrX	11187744	11187744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgatgacttctgcttgtGcagcaggttgggtccaaata	12	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11187744	T	T	11187744	3	4	208	1	0	0	0	0	1	0	0	0	889	1319	46	3	1376	3	ARHGAP6	23	11187744	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	7944866	11187744	144082816	796	164138											
ARHGAP6	395	broad.mit.edu	37	chrX	11242518	11242518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgtctcaggtagtaatGgttcatgcagaaatccagca	9	8	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11242518	A	A	11242518	1	1	208	0	1	0	0	0	0	0	0	0	889	1363	47	4		4	ARHGAP6	23	11242518	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	54774	11242518	144028042	797	164139											
CTPS2	56474	broad.mit.edu	37	chrX	16635174	16635174	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgtttcaaaggagagaaGaaaagaaagaatgcaaaaaa	9	2	1	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16635174	A	A	16635174	1	1	208	0	1	0	0	0	0	0	0	0	4057	957	33	4		4	CTPS2	23	16635174	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	5392656	16635174	138635386	798	164140			1	127		3	3	179	G		1.365497e-05
CTPS2	56474	broad.mit.edu	37	chrX	16635339	16635339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaaaacttaagtcattctGctcaaattgtttgatcaggt	6	7	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16635339	T	T	16635339	3	4	208	1	0	0	0	0	1	0	0	0	4057	1328	46	3	292	3	CTPS2	23	16635339	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	165	16635339	138635221	799	164141			1	127		3	3	179	G		1.365497e-05
CTPS2	56474	broad.mit.edu	37	chrX	16635352	16635352	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattctgctcaaattgtttGatcaggttagggtttacctg	9	7	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16635352	C	C	16635352	3	2	208	1	0	0	0	0	1	0	0	0	4057	1280	45	4	305	4	CTPS2	23	16635352	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	13	16635352	138635208	800	164142			1	127		3	3	179	G		1.365497e-05
BEND2	139105	broad.mit.edu	37	chrX	18230695	18230695	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatatctacctctggagtaTagaatcttcctctttttgga	6	8	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18230695	C	C	18230695	3	2	208	1	0	0	0	0	1	0	0	0	1403	1406	49	5	1987	5	BEND2	23	18230695	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1595343	18230695	137039865	801	164143											
CXorf22	170063	broad.mit.edu	37	chrX	36004220	36004220	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggggttgctcttcttgagGagtatctttgtggtgttctc	13	6	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36004220	C	C	36004220	1	2	208	0	1	0	0	0	0	0	0	0	4135	1189	41	4		4	CXorf22	23	36004220	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	17773525	36004220	119266340	802	164144											
CXorf38	159013	broad.mit.edu	37	chrX	40498351	40498351	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacattcctcaggtccttgTttgtctgctagtcctcgggg	10	12	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40498351	C	C	40498351	2	2	208	1	0	0	0	0	0	0	0	1	4140	1722	60	5		5	CXorf38	23	40498351	Silent	SNP	T	TCGA-73-4670-01A-01D-1265-08	4494131	40498351	114772209	803	164145											
TBC1D25	4943	broad.mit.edu	37	chrX	48399786	48399786	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatccccagatcacctcgctCgacgtgttgcagcacatcct	8	16	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48399786	A	A	48399786	2	1	208	1	0	0	0	0	0	0	0	1	15734	871	31	3		3	TBC1D25	23	48399786	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	7901435	48399786	106870774	804	164146											
PIM2	11040	broad.mit.edu	37	chrX	48771797	48771797	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accagacagtggccgggagtGcatggtactggtgtcgagag	17	8	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48771797	C	C	48771797	3	2	208	1	0	0	0	0	1	0	0	0	12023	1319	46	4	296	4	PIM2	23	48771797	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	372011	48771797	106498763	805	164147											
PHF8	23133	broad.mit.edu	37	chrX	53965686	53965686	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgggacgctttcctgtggGggaagggaaaagtaagcaag	16	5	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53965686	A	A	53965686	1	1	208	0	1	0	0	0	0	0	0	0	11935	1247	43	4		4	PHF8	23	53965686	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	5193889	53965686	101304874	806	164148											
WNK3	65267	broad.mit.edu	37	chrX	54280510	54280510	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctccagaggttgataccTgagtacaaacattttaccgg	8	9	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54280510	A	A	54280510	5	1	208	1	0	0	0	0	0	0	1	0	17506	1594	55	5	3201	5	WNK3	23	54280510	Splice_Site	SNP	T	TCGA-73-4670-01A-01D-1265-08	314824	54280510	100990050	807	164149											
TSR2	90121	broad.mit.edu	37	chrX	54467057	54467057	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttggctgggcggcgtaaGcggcctccaggctactccag	16	12	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54467057	A	A	54467057	1	1	208	0	1	0	0	0	0	0	0	0	16790	986	34	4		4	TSR2	23	54467057	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	186547	54467057	100803503	808	164150											
PFKFB1	5207	broad.mit.edu	37	chrX	54960446	54960446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtacagatcatgactcGcctgtatggaggagaattta	11	7	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54960446	T	T	54960446	1	4	208	0	1	0	0	0	0	0	0	0	11855	1102	38	3		3	PFKFB1	23	54960446	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	493389	54960446	100310114	809	164151											
ZXDA	7789	broad.mit.edu	37	chrX	57934538	57934538	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctgcattggggaatcCaaactgggtttctccctcct	9	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57934538	A	A	57934538	4	1	208	1	0	0	0	0	0	1	0	0	18379	603	21	2	86	2	ZXDA	23	57934538	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	2974092	57934538	97336022	810	164152											
MTMR8	55613	broad.mit.edu	37	chrX	63574638	63574638	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatgcaccaaaaggcaaAcaacaaggacaaaattacct	5	9	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63574638	G	G	63574638	1	3	208	0	1	0	0	0	0	0	0	0	10043	58	2	5		5	MTMR8	23	63574638	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	5640100	63574638	91695922	811	164153											
HEPH	9843	broad.mit.edu	37	chrX	65474875	65474875	+	Splice_Site	DEL	A	-	-													aggttccttgttacacttctAggtgaggtggtcacttatca							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65474875	-	-	65474875	8	5	208	1	0	1	0	1	0	0	1	0	7121	434	15	0	2786	0	HEPH	23	65474875	Splice_Site	DEL	A	TCGA-73-4670-01A-01D-1265-08	1900237	65474875	89795685	812	164154											
YIPF6	286451	broad.mit.edu	37	chrX	67733217	67733217	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcatgcatgttttgtacCcaaggaaaagtaatactctt	6	7	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67733217	A	A	67733217	3	1	208	1	0	0	0	0	1	0	0	0	17609	623	22	2	245	2	YIPF6	23	67733217	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	2258342	67733217	87537343	813	164155											
STARD8	9754	broad.mit.edu	37	chrX	67938321	67938321	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaagaaggacactccatttCtgacactgtggcctcctcca	9	13	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67938321	G	G	67938321	3	3	208	1	0	0	0	0	1	0	0	0	15381	913	32	4	1587	4	STARD8	23	67938321	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	205104	67938321	87332239	814	164156											
STARD8	9754	broad.mit.edu	37	chrX	67938390	67938390	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgaggctgaggctgcggGgcccctggctggactccagg	18	11	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67938390	A	A	67938390	3	1	208	1	0	0	0	0	1	0	0	0	15381	1232	43	4	1656	4	STARD8	23	67938390	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	69	67938390	87332170	815	164157											
EFNB1	1947	broad.mit.edu	37	chrX	68059566	68059566	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcggtgtgtgccgcacaCgcaccatgaagatcatcatg	13	11	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68059566	A	A	68059566	3	1	208	1	0	0	0	0	1	0	0	0	4995	536	19	3	476	3	EFNB1	23	68059566	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	121176	68059566	87210994	816	164158											
ARR3	407	broad.mit.edu	37	chrX	69496556	69496556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtgaagagtttctgtgCtgaaaacccagaggagacag	13	6	1	6			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69496556	A	A	69496556	3	1	208	1	0	0	0	0	1	0	0	0	983	797	28	3	469	3	ARR3	23	69496556	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1436990	69496556	85774004	817	164159											
ARR3	407	broad.mit.edu	37	chrX	69497903	69497903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attataatcatgtgcttttcCtggcttgttcagttgaccag	8	8	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69497903	T	T	69497903	1	4	208	0	1	0	0	0	0	0	0	0	983	696	24	4		4	ARR3	23	69497903	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1347	69497903	85772657	818	164160											
MED12	9968	broad.mit.edu	37	chrX	70342572	70342572	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggttcagtcccctttacCacttttcctccttaggcttc	5	15	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70342572	T	T	70342572	1	4	208	0	1	0	0	0	0	0	0	0	9521	609	21	4		4	MED12	23	70342572	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	844669	70342572	84927988	819	164161											
OGT	8473	broad.mit.edu	37	chrX	70774243	70774243	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actaaataaataattggtttAttaaaatgaaatgtaattga	5	1	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70774243	C	C	70774243	1	2	208	0	1	0	0	0	0	0	0	0	10942	464	16	5		5	OGT	23	70774243	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	431671	70774243	84496317	820	164162											
PHKA1	5255	broad.mit.edu	37	chrX	71876217	71876217	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgttcaggaagcagagcaTgtacatactcccttccctta	9	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71876217	C	C	71876217	1	2	208	0	1	0	0	0	0	0	0	0	11938	1479	51	5		5	PHKA1	23	71876217	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	1101974	71876217	83394343	821	164163											
ATP7A	538	broad.mit.edu	37	chrX	77284869	77284869	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactccaactgctgtgatGgtgggtacaggagtaggtgc	15	9	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77284869	T	T	77284869	3	4	208	1	0	0	0	0	1	0	0	0	1194	1348	47	2	3093	2	ATP7A	23	77284869	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	5408652	77284869	77985691	822	164164											
BRWD3	254065	broad.mit.edu	37	chrX	79975054	79975054	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttcattaattagtctcaGgtcttgttctctctgcagct	6	11	5	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79975054	T	T	79975054	3	4	208	1	0	0	0	0	1	0	0	0	1535	991	35	2	3526	2	BRWD3	23	79975054	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	2690185	79975054	75295506	823	164165											
HDX	139324	broad.mit.edu	37	chrX	83695583	83695583	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatccaaggcacagtaaggTttcctgaaatctgtgaaaac	8	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83695583	C	C	83695583	3	2	208	1	0	0	0	0	1	0	0	0	7093	1725	60	5	838	5	HDX	23	83695583	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	3720529	83695583	71574977	824	164166											
ZNF711	7552	broad.mit.edu	37	chrX	84502438	84502438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgttttgctttcttttGtaataagctttccacacttg	5	8	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84502438	A	A	84502438	1	1	208	0	1	0	0	0	0	0	0	0	18244	1392	48	4		4	ZNF711	23	84502438	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	806855	84502438	70768122	825	164167											
POF1B	79983	broad.mit.edu	37	chrX	84562228	84562228	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttcgtactcttttaattGagtgtctttgaatgataaat	6	5	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84562228	T	T	84562228	3	4	208	1	0	0	0	0	1	0	0	0	12277	1299	45	3	692	3	POF1B	23	84562228	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	59790	84562228	70708332	826	164168											
PCDH11X	27328	broad.mit.edu	37	chrX	91133670	91133670	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaccaactagtgactatGtcaagatcctggttgcagct	8	12	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91133670	T	T	91133670	3	4	208	1	0	0	0	0	1	0	0	0	11602	1377	48	3	2437	3	PCDH11X	23	91133670	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	6571442	91133670	64136890	827	164169											
PCDH11X	27328	broad.mit.edu	37	chrX	91134128	91134129	+	Missense_Mutation	DNP	CC	AA	AA													aattcgaagcaccacatcatCcaagaactgcctctcgataa							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	91134129	AA	AA	91134128	3	1	208	1	0	0	0	0	1	0	0	0	11602	845	30	3	2895	3	PCDH11X	23	91134128	Missense_Mutation	DNP	CC	TCGA-73-4670-01A-01D-1265-08	458	91134128	64136432	828	164170											
TNMD	64102	broad.mit.edu	37	chrX	99849085	99849085	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttaaaatattagagcagtTgagtcaagttaaaaatagcc	7	5	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99849085	G	G	99849085	1	3	208	0	1	0	0	0	0	0	0	0	16445	1827	63	5		5	TNMD	23	99849085	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	8714957	99849085	55421475	829	164171											
SRPX2	27286	broad.mit.edu	37	chrX	99920543	99920543	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccatgcagggtgacacttCggggccctgagcctggctct	13	14	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99920543	A	A	99920543	2	1	208	1	0	0	0	0	0	0	0	1	15283	875	31	3		3	SRPX2	23	99920543	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	71458	99920543	55350017	830	164172											
SYTL4	94121	broad.mit.edu	37	chrX	99941666	99941666	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcctacccttgaggtctAgatacttaccctcagcgtct	6	14	4	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99941666	G	G	99941666	1	3	208	0	1	0	0	0	0	0	0	0	15604	435	15	5		5	SYTL4	23	99941666	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	21123	99941666	55328894	831	164173											
SYTL4	94121	broad.mit.edu	37	chrX	99956257	99956257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatcctgattatctcactaCctgtgcggtaagcaaagcga	8	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99956257	A	A	99956257	3	1	208	1	0	0	0	0	1	0	0	0	15604	507	18	3	1676	3	SYTL4	23	99956257	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	14591	99956257	55314303	832	164174											
CSTF2	1478	broad.mit.edu	37	chrX	100093506	100093506	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaggtcagctcctgtagGgatagagtaaggctatacaa	12	7	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100093506	T	T	100093506	1	4	208	0	1	0	0	0	0	0	0	0	4018	1247	43	2		2	CSTF2	23	100093506	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	137249	100093506	55177054	833	164175											
TRMT2B	79979	broad.mit.edu	37	chrX	100296848	100296848	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagacaaagagaacggtttCtgcaaccccaaagcatttcc	7	11	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100296848	A	A	100296848	1	1	208	0	1	0	0	0	0	0	0	0	16691	928	32	3		3	TRMT2B	23	100296848	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	203342	100296848	54973712	834	164176											
TAF7L	54457	broad.mit.edu	37	chrX	100531745	100531745	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatttagagactctaagggtCataggaagttaaaataccag	9	5	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100531745	T	T	100531745	1	4	208	0	1	0	0	0	0	0	0	0	15652	841	29	4		4	TAF7L	23	100531745	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	234897	100531745	54738815	835	164177											
BTK	695	broad.mit.edu	37	chrX	100608449	100608449	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagttggttccccgctctGtgctttttatattttgccca	7	11	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100608449	T	T	100608449	1	4	208	0	1	0	0	0	0	0	0	0	1567	1392	48	3		3	BTK	23	100608449	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	76704	100608449	54662111	836	164178											
BTK	695	broad.mit.edu	37	chrX	100617922	100617922	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagtatctcccaatcaacAagataagactatctgatggc	8	9	3	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100617922	G	G	100617922	1	3	208	0	1	0	0	0	0	0	0	0	1567	145	5	5		5	BTK	23	100617922	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	9473	100617922	54652638	837	164179											
GLA	2717	broad.mit.edu	37	chrX	100662855	100662855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaagcgaagcgcaagcgCgcagcccagatgtagttctg	14	11	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100662855	A	A	100662855	3	1	208	1	0	0	0	0	1	0	0	0	6490	768	27	3	1280	3	GLA	23	100662855	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	44933	100662855	54607705	838	164180											
NXF2B	728343	broad.mit.edu	37	chrX	101620781	101620781	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcaaatgtgtgtgtgtgGggggggtggcggcgggggga	24	4	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101620781	T	T	101620781	1	4	208	0	1	0	0	0	0	0	0	0	10879	1247	43	2		2	NXF2B	23	101620781	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	957926	101620781	53649779	839	164181											
BHLHB9	80823	broad.mit.edu	37	chrX	102003951	102003951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactaagaataagacaagaGcccaggccaaaactgaaaaa	9	8	0	4			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102003951	T	T	102003951	3	4	208	1	0	0	0	0	1	0	0	0	1426	971	34	3	30	3	BHLHB9	23	102003951	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	383170	102003951	53266609	840	164182											
TCEAL3	85012	broad.mit.edu	37	chrX	102864703	102864703	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccttaagctgatactttgCtttagatgtcagtctcgtta	7	8	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102864703	A	A	102864703	1	1	208	0	1	0	0	0	0	0	0	0	15794	812	28	3		3	TCEAL3	23	102864703	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	860752	102864703	52405857	841	164183											
FAM199X	139231	broad.mit.edu	37	chrX	103433153	103433153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaacaaagcactctaggCtgagtgctttgaaatgctgt	11	7	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103433153	A	A	103433153	1	1	208	0	1	0	0	0	0	0	0	0	5577	812	28	3		3	FAM199X	23	103433153	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	568450	103433153	51837407	842	164184											
TEX13A	56157	broad.mit.edu	37	chrX	104463939	104463939	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggggatatagtgggtatgtCtgagaaggaggaaaaagggc	18	2	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104463939	A	A	104463939	3	1	208	1	0	0	0	0	1	0	0	0	15898	912	32	3	296	3	TEX13A	23	104463939	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1030786	104463939	50806621	843	164185											
RBM41	55285	broad.mit.edu	37	chrX	106362203	106362203	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgtccaaatatttattttGaatttctcatttaggttcaa	4	5	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106362203	C	C	106362203	1	2	208	0	1	0	0	0	0	0	0	0	13243	1305	45	4		4	RBM41	23	106362203	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	1898264	106362203	48908357	844	164186											
PRPS1	5631	broad.mit.edu	37	chrX	106882522	106882522	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttctttctttcctcattgTagtgtggaaattggtgaaag	10	5	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106882522	A	A	106882522	1	1	208	0	1	0	0	0	0	0	0	0	12684	1653	57	5		5	PRPS1	23	106882522	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	520319	106882522	48388038	845	164187											
COL4A5	1287	broad.mit.edu	37	chrX	107834721	107834721	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taggtctttttctggcttgtCaggctttcttttgtttaatc	8	7	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107834721	A	A	107834721	1	1	208	0	1	0	0	0	0	0	0	0	3726	841	29	3		3	COL4A5	23	107834721	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	952199	107834721	47435839	846	164188											
CAPN6	827	broad.mit.edu	37	chrX	110490481	110490482	+	Intron	DNP	CC	AA	AA													gtttttgagtataaaacaaaCcaaaaaatacgataattctt							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	110490482	AA	AA	110490481	1	1	208	0	1	0	0	0	0	0	0	0	2656	522	18	3		3	CAPN6	23	110490481	Intron	DNP	CC	TCGA-73-4670-01A-01D-1265-08	2655760	110490481	44780079	847	164189											
TRPC5	7224	broad.mit.edu	37	chrX	111090456	111090456	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagtccattggcaaaagctAgtagtaccaggcagtagata	10	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111090456	G	G	111090456	3	3	208	1	0	0	0	0	1	0	0	0	16707	420	15	5	1359	5	TRPC5	23	111090456	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	599975	111090456	44180104	848	164190											
PLS3	5358	broad.mit.edu	37	chrX	114864414	114864414	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attatccaggttctgcctttTtcatttaatctctaggtctg	6	9	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114864414	C	C	114864414	1	2	208	0	1	0	0	0	0	0	0	0	12203	1856	64	5		5	PLS3	23	114864414	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	3773958	114864414	40406146	849	164191											
SLC6A14	11254	broad.mit.edu	37	chrX	115588726	115588726	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaattgctaatcatcagtgCaataaagtctaatctttagc	5	8	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115588726	A	A	115588726	1	1	208	0	1	0	0	0	0	0	0	0	14791	725	25	3		3	SLC6A14	23	115588726	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	724312	115588726	39681834	850	164192											
WDR44	54521	broad.mit.edu	37	chrX	117576743	117576743	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtttaatggggttcttttCacttttgcaagtagtagttt	9	4	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117576743	G	G	117576743	1	3	208	0	1	0	0	0	0	0	0	0	17423	841	29	4		4	WDR44	23	117576743	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	1988017	117576743	37693817	851	164193											
KIAA1210	57481	broad.mit.edu	37	chrX	118221891	118221891	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtgctttctggatgtgcaGagagttgatacagttcctca	11	7	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118221891	T	T	118221891	3	4	208	1	0	0	0	0	1	0	0	0	8284	942	33	3	1843	3	KIAA1210	23	118221891	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	645148	118221891	37048669	852	164194											
KIAA1210	57481	broad.mit.edu	37	chrX	118239129	118239129	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctgtcaagagggagaataGaaggaacaatttaaaacctg	10	5	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118239129	A	A	118239129	1	1	208	0	1	0	0	0	0	0	0	0	8284	957	33	4		4	KIAA1210	23	118239129	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	17238	118239129	37031431	853	164195											
CXorf56	63932	broad.mit.edu	37	chrX	118675258	118675259	+	Intron	DNP	GG	TT	TT													ccaagacatccaaatgatagGgccccagcaccttgctaccc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	118675259	TT	TT	118675258	1	4	208	0	1	0	0	0	0	0	0	0	4145	1247	43	2		2	CXorf56	23	118675258	Intron	DNP	GG	TCGA-73-4670-01A-01D-1265-08	436129	118675258	36595302	854	164196											
ANKRD58	347454	broad.mit.edu	37	chrX	118893473	118893473	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acggctgtggagacaagcagGagagtggcagcgtcgcggac	18	9	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118893473	T	T	118893473	3	4	208	1	0	0	0	0	1	0	0	0	684	1165	41	3	845	3	ANKRD58	23	118893473	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	218215	118893473	36377087	855	164197											
NKAP	79576	broad.mit.edu	37	chrX	119072667	119072667	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacacatattataacatttTaaaaatatattttttaacca	0	5	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119072667	A	A	119072667	1	1	208	0	1	0	0	0	0	0	0	0	10534	1769	61	5		5	NKAP	23	119072667	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	179194	119072667	36197893	856	164198											
ZBTB33	10009	broad.mit.edu	37	chrX	119388004	119388004	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctttaacaaatatcacacCtactcagaaacttcctactc	1	15	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119388004	A	A	119388004	3	1	208	1	0	0	0	0	1	0	0	0	17662	681	24	2	736	2	ZBTB33	23	119388004	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	315337	119388004	35882556	857	164199											
FAM70A	55026	broad.mit.edu	37	chrX	119419210	119419210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgtgtgggaaggatggGgctggatggggagctggccg	21	6	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119419210	T	T	119419210	1	4	208	0	1	0	0	0	0	0	0	0	5656	1247	43	2		2	FAM70A	23	119419210	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	31206	119419210	35851350	858	164200											
FAM70A	55026	broad.mit.edu	37	chrX	119427809	119427809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgttgtgcttttttagaGgaagaacttgactctataag	9	4	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119427809	T	T	119427809	1	4	208	0	1	0	0	0	0	0	0	0	5656	1015	35	2		2	FAM70A	23	119427809	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	8599	119427809	35842751	859	164201											
THOC2	57187	broad.mit.edu	37	chrX	122745444	122745444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaaccccttttcatcaccCgcgagctatatttgtcttca	4	14	4	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122745444	A	A	122745444	1	1	208	0	1	0	0	0	0	0	0	0	15988	667	23	1		1	THOC2	23	122745444	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3317635	122745444	32525116	860	164202											
THOC2	57187	broad.mit.edu	37	chrX	122765637	122765637	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaattgaaggcactcgctTtatataatcttctgtgctca	6	9	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122765637	A	A	122765637	4	1	208	1	0	0	0	0	0	1	0	0	15988	1850	64	5	2466	5	THOC2	23	122765637	Nonsense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	20193	122765637	32504923	861	164203											
ODZ1	10178	broad.mit.edu	37	chrX	123518550	123518550	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactgctctgttctgccagaGacatcaacatatcggtaaag	8	10	3	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123518550	T	T	123518550	2	4	208	1	0	0	0	0	0	0	0	1	10929	929	33	3		3	ODZ1	23	123518550	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	752913	123518550	31752010	862	164204											
ODZ1	10178	broad.mit.edu	37	chrX	123538980	123538980	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctctccgggcaatgagatGttgcatttgcccagggtagg	14	9	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123538980	A	A	123538980	2	1	208	1	0	0	0	0	0	0	0	1	10929	1368	48	4		4	ODZ1	23	123538980	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	20430	123538980	31731580	863	164205											
ODZ1	10178	broad.mit.edu	37	chrX	123631016	123631016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccattgcagttggtgCaggctacactcctttggtgt	13	10	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123631016	A	A	123631016	3	1	208	1	0	0	0	0	1	0	0	0	10929	710	25	3	4705	3	ODZ1	23	123631016	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	92036	123631016	31639544	864	164206											
ODZ1	10178	broad.mit.edu	37	chrX	123805609	123805609	+	Frame_Shift_Del	DEL	C	-	-													atggactcggtccccctgttCcctttgctaactccatttgc							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123805609	-	-	123805609	7	5	208	1	0	1	0	1	0	0	0	0	10929	842	30	0	7214	0	ODZ1	23	123805609	Frame_Shift_Del	DEL	C	TCGA-73-4670-01A-01D-1265-08	174593	123805609	31464951	865	164207											
OCRL	4952	broad.mit.edu	37	chrX	128692825	128692825	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatttgctaggcttccacGtgaaaaagaagcttctaaca	7	8	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128692825	T	T	128692825	3	4	208	1	0	0	0	0	1	0	0	0	10918	1145	40	3	599	3	OCRL	23	128692825	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	4887216	128692825	26577735	866	164208											
IGSF1	3547	broad.mit.edu	37	chrX	130413220	130413220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccggccttctgcccggGgccccttcccccacttgtac	8	22	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130413220	T	T	130413220	1	4	208	0	1	0	0	0	0	0	0	0	7666	1247	43	2		2	IGSF1	23	130413220	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1720395	130413220	24857340	867	164209											
IGSF1	3547	broad.mit.edu	37	chrX	130415602	130415602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgatctgggatccctgggGtatggaggggcattcctctg	15	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130415602	T	T	130415602	1	4	208	0	1	0	0	0	0	0	0	0	7666	1276	44	3		3	IGSF1	23	130415602	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	2382	130415602	24854958	868	164210											
IGSF1	3547	broad.mit.edu	37	chrX	130416668	130416668	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acattctgacccatttggacCacagcactgggccgagcaag	10	13	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130416668	G	G	130416668	2	3	208	1	0	0	0	0	0	0	0	1	7666	581	21	4		4	IGSF1	23	130416668	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	1066	130416668	24853892	869	164211											
OR13H1	347468	broad.mit.edu	37	chrX	130678554	130678554	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggcttcacttctgtggGgctaatgtcatcaaccattt	9	10	4	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130678554	T	T	130678554	2	4	208	1	0	0	0	0	0	0	0	1	11037	1219	43	2		2	OR13H1	23	130678554	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	261886	130678554	24592006	870	164212											
GPC4	2239	broad.mit.edu	37	chrX	132458435	132458435	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcacatttcccaccacgTagtaacgtttcaactctacg	6	13	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132458435	C	C	132458435	3	2	208	1	0	0	0	0	1	0	0	0	6665	1638	57	5	1249	5	GPC4	23	132458435	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	1779881	132458435	22812125	871	164213											
FAM127B	26071	broad.mit.edu	37	chrX	134186196	134186196	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggggtcagcgctaaggcGtcgccggaagcgcatgtcga	18	10	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134186196	T	T	134186196	1	4	208	0	1	0	0	0	0	0	0	0	5478	1160	40	3		3	FAM127B	23	134186196	5'UTR	SNP	G	TCGA-73-4670-01A-01D-1265-08	1727761	134186196	21084364	872	164214											
GPR112	139378	broad.mit.edu	37	chrX	135426945	135426945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaatggttgaagccatGgctactgaaatctttcaacc	7	9	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135426945	T	T	135426945	3	4	208	1	0	0	0	0	1	0	0	0	6694	1348	47	2	1090	2	GPR112	23	135426945	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1240749	135426945	19843615	873	164215											
HTATSF1	27336	broad.mit.edu	37	chrX	135593109	135593109	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttctagagcaaggcattTttcagagcaccccagcacat	8	13	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135593109	C	C	135593109	3	2	208	1	0	0	0	0	1	0	0	0	7503	1841	64	5	1239	5	HTATSF1	23	135593109	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	166164	135593109	19677451	874	164216											
VGLL1	51442	broad.mit.edu	37	chrX	135618294	135618294	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acttccaaggggacatcagcAgcgtagtggatgaacacttc	11	10	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135618294	T	T	135618294	3	4	208	1	0	0	0	0	1	0	0	0	17285	188	7	5	117	5	VGLL1	23	135618294	Missense_Mutation	SNP	A	TCGA-73-4670-01A-01D-1265-08	25185	135618294	19652266	875	164217											
ARHGEF6	9459	broad.mit.edu	37	chrX	135765052	135765052	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacagaattggacactttaTctgttgagaatttctggaat	9	5	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135765052	C	C	135765052	1	2	208	0	1	0	0	0	0	0	0	0	912	1450	50	5		5	ARHGEF6	23	135765052	Intron	SNP	T	TCGA-73-4670-01A-01D-1265-08	146758	135765052	19505508	876	164218											
ARHGEF6	9459	broad.mit.edu	37	chrX	135827284	135827284	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcagtgatgcccaaaacaAcccggatggctgtctcacca	8	14	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135827284	G	G	135827284	1	3	208	0	1	0	0	0	0	0	0	0	912	58	2	5		5	ARHGEF6	23	135827284	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	62232	135827284	19443276	877	164219											
ARHGEF6	9459	broad.mit.edu	37	chrX	135827428	135827428	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaactgtgctagaaactGctccctgtgggtttgtctga	11	9	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135827428	T	T	135827428	3	4	208	1	0	0	0	0	1	0	0	0	912	1319	46	3	1993	3	ARHGEF6	23	135827428	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	144	135827428	19443132	878	164220											
GPR101	83550	broad.mit.edu	37	chrX	136113845	136113845	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggacgtcatggcaacagccaGagggcgtgagacaggttgca	16	9	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136113845	A	A	136113845	1	1	208	0	1	0	0	0	0	0	0	0	6687	957	33	4		4	GPR101	23	136113845	5'Flank	SNP	G	TCGA-73-4670-01A-01D-1265-08	286417	136113845	19156715	879	164221											
MCF2	4168	broad.mit.edu	37	chrX	138708396	138708396	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatagttgcagatactgctCcatttttaattgatgttttt	6	7	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138708396	A	A	138708396	4	1	208	1	0	0	0	0	0	1	0	0	9471	864	30	3	2294	3	MCF2	23	138708396	Nonsense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	2594551	138708396	16562164	880	164222											
ATP11C	286410	broad.mit.edu	37	chrX	138832142	138832142	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agataaaatgaaaatcacaaCactgaaagtcttagggggtt	9	5	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138832142	G	G	138832142	1	3	208	0	1	0	0	0	0	0	0	0	1125	493	17	4		4	ATP11C	23	138832142	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	123746	138832142	16438418	881	164223											
SPANXC	64663	broad.mit.edu	37	chrX	140336685	140336686	+	5'Flank	DNP	CC	AA	AA													gccctccctgtatataccctCctggtgacaaggcaaagcca							TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140336686	AA	AA	140336685	1	1	208	0	1	0	0	0	0	0	0	0	15103	870	30	3		3	SPANXC	23	140336685	5'Flank	DNP	CC	TCGA-73-4670-01A-01D-1265-08	1504543	140336685	14933875	882	164224											
SPANXC	64663	broad.mit.edu	37	chrX	140358264	140358264	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcactgtccttgtactcGgaaggccaggacatcttatc	10	12	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140358264	T	T	140358264	1	4	208	0	1	0	0	0	0	0	0	0	15103	1131	39	1		1	SPANXC	23	140358264	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	21579	140358264	14912296	883	164225											
SPANXN4	441525	broad.mit.edu	37	chrX	142121947	142121947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactggagaataaccagcCtacagagagctccactgatc	8	12	1	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142121947	A	A	142121947	3	1	208	1	0	0	0	0	1	0	0	0	15109	681	24	2	221	2	SPANXN4	23	142121947	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	1763683	142121947	13148613	884	164226											
SPANXN1	494118	broad.mit.edu	37	chrX	144329227	144329227	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagggtgaaagaaagaCacacagagaagggacggctc	16	6	0	5			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144329227	A	A	144329227	1	1	208	0	1	0	0	0	0	0	0	0	15106	493	17	3		3	SPANXN1	23	144329227	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	2207280	144329227	10941333	885	164227											
AFF2	2334	broad.mit.edu	37	chrX	148060052	148060052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaataagacacgacatgcaGgttatcgaatgtcaaatgct	8	8	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148060052	T	T	148060052	1	4	208	0	1	0	0	0	0	0	0	0	357	1015	35	2		2	AFF2	23	148060052	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	3730825	148060052	7210508	886	164228											
CD99L2	83692	broad.mit.edu	37	chrX	149963469	149963469	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagttttaaattctaagatGatgagtattgataaacgtga	8	3	2	5			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149963469	A	A	149963469	1	1	208	0	1	0	0	0	0	0	0	0	3081	1305	45	4		4	CD99L2	23	149963469	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	1903417	149963469	5307091	887	164229											
CD99L2	83692	broad.mit.edu	37	chrX	149963874	149963874	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccttgccttactactctcctCagagcggccaccttacctaa	5	17	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149963874	A	A	149963874	1	1	208	0	1	0	0	0	0	0	0	0	3081	841	29	3		3	CD99L2	23	149963874	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	405	149963874	5306686	888	164230											
HMGB3	3149	broad.mit.edu	37	chrX	150154608	150154608	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgggaaatgaaggattatGgaccagctaagggaggcaag	15	5	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150154608	T	T	150154608	4	4	208	1	0	0	0	0	0	1	0	0	7294	1349	47	2	241	2	HMGB3	23	150154608	Nonsense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	190734	150154608	5115952	889	164231											
MAGEA4	4103	broad.mit.edu	37	chrX	151092809	151092809	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgaggaggaaatctgggagGagctgggtgtgatgggggtg	22	3	1	2	rs143158098		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151092809	A	A	151092809	3	1	208	1	0	0	0	0	1	0	0	0	9258	1175	41	4	675	4	MAGEA4	23	151092809	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	938201	151092809	4177751	890	164232											
GABRQ	55879	broad.mit.edu	37	chrX	151821480	151821480	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaagagcgactgccttgcCattaaggagcaattcaagtg	11	9	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151821480	T	T	151821480	2	4	208	1	0	0	0	0	0	0	0	1	6235	581	21	4		4	GABRQ	23	151821480	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	728671	151821480	3449080	891	164233											
MAGEA6	4105	broad.mit.edu	37	chrX	151869629	151869629	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggagtctgagttccaaGcagcactcagtaggaaggtg	13	9	2	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151869629	A	A	151869629	3	1	208	1	0	0	0	0	1	0	0	0	9260	971	34	4	321	4	MAGEA6	23	151869629	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	48149	151869629	3400931	892	164234											
HAUS7	55559	broad.mit.edu	37	chrX	152735900	152735900	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggagtggctttctgggccAacagcaccttcagcttcccg	11	14	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152735900	T	T	152735900	1	4	208	0	1	0	0	0	0	0	0	0	7037	145	5	5		5	HAUS7	23	152735900	Intron	SNP	A	TCGA-73-4670-01A-01D-1265-08	866271	152735900	2534660	893	164235											
ATP2B3	492	broad.mit.edu	37	chrX	152826336	152826336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	accatcgttttgggcactttCgggattcaggtaggaggggc	15	8	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152826336	A	A	152826336	3	1	208	1	0	0	0	0	1	0	0	0	1145	883	31	3	3108	3	ATP2B3	23	152826336	Missense_Mutation	SNP	C	TCGA-73-4670-01A-01D-1265-08	90436	152826336	2444224	894	164236											
PLXNB3	5365	broad.mit.edu	37	chrX	153032306	153032306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttgcgctcccactgcCctgacctgtgccctctcaca	7	20	1	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153032306	A	A	153032306	1	1	208	0	1	0	0	0	0	0	0	0	12220	638	22	2		2	PLXNB3	23	153032306	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	205970	153032306	2238254	895	164237											
PLXNB3	5365	broad.mit.edu	37	chrX	153039400	153039400	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagcccacccgcagcgggtCttcttcaccctagacaacgt	9	16	3	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153039400	A	A	153039400	2	1	208	1	0	0	0	0	0	0	0	1	12220	900	32	3		3	PLXNB3	23	153039400	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	7094	153039400	2231160	896	164238											
SRPK3	26576	broad.mit.edu	37	chrX	153047319	153047319	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaccccactcccagctcccCtggagctgcctggggcctgg	11	19	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153047319	G	G	153047319	1	3	208	0	1	0	0	0	0	0	0	0	15279	696	24	4		4	SRPK3	23	153047319	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	7919	153047319	2223241	897	164239											
SSR4	6748	broad.mit.edu	37	chrX	153063471	153063471	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttcccctcccctccccaCccccacacgccaggcacccc	3	27	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153063471	A	A	153063471	1	1	208	0	1	0	0	0	0	0	0	0	15311	522	18	3		3	SSR4	23	153063471	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	16152	153063471	2207089	898	164240											
L1CAM	3897	broad.mit.edu	37	chrX	153136159	153136159	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgttcttgaggaagcctgGagttgtcagatggacctatg	14	7	2	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153136159	T	T	153136159	1	4	208	0	1	0	0	0	0	0	0	0	8660	1189	41	3		3	L1CAM	23	153136159	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	72688	153136159	2134401	899	164241											
AVPR2	554	broad.mit.edu	37	chrX	153171598	153171598	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctggattgccctgatggTgttcgtggcacctaccctgg	12	13	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153171598	G	G	153171598	3	3	208	1	0	0	0	0	1	0	0	0	1238	1696	59	5	644	5	AVPR2	23	153171598	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	35439	153171598	2098962	900	164242											
HCFC1	3054	broad.mit.edu	37	chrX	153216379	153216379	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattccggcaacacgaaacTtataggctgtgcctggctgc	11	11	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153216379	G	G	153216379	3	3	208	1	0	0	0	0	1	0	0	0	7057	1609	56	5	535	5	HCFC1	23	153216379	Missense_Mutation	SNP	T	TCGA-73-4670-01A-01D-1265-08	44781	153216379	2054181	901	164243											
HCFC1	3054	broad.mit.edu	37	chrX	153217516	153217516	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaatgggtatggtggtgGcctggccctcctgaccctcg	14	13	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153217516	T	T	153217516	3	4	208	1	0	0	0	0	1	0	0	0	7057	1203	42	3	1099	3	HCFC1	23	153217516	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	1137	153217516	2053044	902	164244											
IRAK1	3654	broad.mit.edu	37	chrX	153278822	153278822	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggggatgcagctggcGgcctccgaatgcccgggcac	18	12	0	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153278822	T	T	153278822	2	4	208	1	0	0	0	0	0	0	0	1	7891	1103	39	1		1	IRAK1	23	153278822	Silent	SNP	G	TCGA-73-4670-01A-01D-1265-08	61306	153278822	1991738	903	164245											
OPN1LW	5956	broad.mit.edu	37	chrX	153418616	153418616	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcaagatggagtgggcagGgtcagactctgtgaccttaa	14	8	2	3			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153418616	T	T	153418616	1	4	208	0	1	0	0	0	0	0	0	0	10971	1247	43	2		2	OPN1LW	23	153418616	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	139794	153418616	1851944	904	164246											
OPN1LW	5956	broad.mit.edu	37	chrX	153421721	153421721	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctatgcctgggtcacctgCctcttgctgccctccaaccc	7	20	2	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153421721	A	A	153421721	1	1	208	0	1	0	0	0	0	0	0	0	10971	754	26	3		3	OPN1LW	23	153421721	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	3105	153421721	1848839	905	164247											
TKTL1	8277	broad.mit.edu	37	chrX	153524396	153524396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggccacgggcccggtGgcttcaggcctggtggccat	17	13	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153524396	T	T	153524396	1	4	208	0	1	0	0	0	0	0	0	0	16058	1363	47	2		2	TKTL1	23	153524396	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	102675	153524396	1746164	906	164248											
TKTL1	8277	broad.mit.edu	37	chrX	153524473	153524473	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgggctgtgtcgtaatgcCctgtcttgggctgttggggc	16	8	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153524473	A	A	153524473	1	1	208	0	1	0	0	0	0	0	0	0	16058	638	22	2		2	TKTL1	23	153524473	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	77	153524473	1746087	907	164249											
FLNA	2316	broad.mit.edu	37	chrX	153595359	153595359	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagtgtgagctgtggcacaGagcctggcctcgggacccag	15	12	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153595359	T	T	153595359	1	4	208	0	1	0	0	0	0	0	0	0	5991	957	33	3		3	FLNA	23	153595359	Intron	SNP	G	TCGA-73-4670-01A-01D-1265-08	70886	153595359	1675201	908	164250											
ATP6AP1	537	broad.mit.edu	37	chrX	153664276	153664276	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagggtgggacggtgtcCgtgttgttgctttcccaccc	15	10	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153664276	A	A	153664276	1	1	208	0	1	0	0	0	0	0	0	0	1169	667	23	1		1	ATP6AP1	23	153664276	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	68917	153664276	1606284	909	164251											
FAM50A	9130	broad.mit.edu	37	chrX	153677050	153677050	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctcccaggaggaggagaatCggcttcgggaagagctgcgg	17	9	1	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153677050	A	A	153677050	2	1	208	1	0	0	0	0	0	0	0	1	5628	875	31	3		3	FAM50A	23	153677050	Silent	SNP	C	TCGA-73-4670-01A-01D-1265-08	12774	153677050	1593510	910	164252											
PLXNA3	55558	broad.mit.edu	37	chrX	153696086	153696086	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtgggcgtggtggtcagCtcacctcaggcctgtcccca	15	13	3	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153696086	A	A	153696086	1	1	208	0	1	0	0	0	0	0	0	0	12216	812	28	3		3	PLXNA3	23	153696086	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	19036	153696086	1574474	911	164253											
MPP1	4354	broad.mit.edu	37	chrX	154018221	154018221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacaacagagaaaatggtgCcacccacctgtagtgcagga	11	10	0	2			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154018221	A	A	154018221	1	1	208	0	1	0	0	0	0	0	0	0	9827	754	26	3		3	MPP1	23	154018221	Intron	SNP	C	TCGA-73-4670-01A-01D-1265-08	322135	154018221	1252339	912	164254											
F8	2157	broad.mit.edu	37	chrX	154158632	154158632	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taaggatactaattgctttgGactggggccttgcccagagt	12	8	0	1			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154158632	T	T	154158632	3	4	208	1	0	0	0	0	1	0	0	0	5393	1174	41	3	3702	3	F8	23	154158632	Missense_Mutation	SNP	G	TCGA-73-4670-01A-01D-1265-08	140411	154158632	1111928	913	164255											
VBP1	7411	broad.mit.edu	37	chrX	154467159	154467159	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtttagttttccaaaCatgttatcttaaatacccct	5	8	1	0			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154467159	T	T	154467159	1	4	208	0	1	0	0	0	0	0	0	0	17263	493	17	4		4	VBP1	23	154467159	3'UTR	SNP	C	TCGA-73-4670-01A-01D-1265-08	308527	154467159	803401	914	164256											
KIF1B	23095	broad.mit.edu	37	chr1	10292474	10292474	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatccaaatgcatcattcagAtgcaaggcaactcgaccagt	7	11	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10292474	G	G	10292474	3	3	209	1	0	0	0	0	1	0	0	0	8354	333	12	5	90	5	KIF1B	1	10292474	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08		10292474	238958147	1	164257											
CNKSR1	10256	broad.mit.edu	37	chr1	26510820	26510820	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccccggacacggcatctgGgcacccagttctgaccccaa	10	17	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26510820	A	A	26510820	1	1	209	0	1	0	0	0	0	0	0	0	3638	1247	43	4		4	CNKSR1	1	26510820	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	16218346	26510820	222739801	2	164258											
HECTD3	79654	broad.mit.edu	37	chr1	45471493	45471493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccacagctgggaagtcCttgctccagctcacctcctc	9	16	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45471493	A	A	45471493	3	1	209	1	0	0	0	0	1	0	0	0	7108	680	24	2	705	2	HECTD3	1	45471493	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	18960673	45471493	203779128	3	164259											
FAF1	11124	broad.mit.edu	37	chr1	50941262	50941262	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctccaagaactcgccactGggggtccggatccgcagttt	12	14	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50941262	A	A	50941262	2	1	209	1	0	0	0	0	0	0	0	1	5415	1335	47	4		4	FAF1	1	50941262	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	5469769	50941262	198309359	4	164260											
PIGK	10026	broad.mit.edu	37	chr1	77660947	77660947	+	Intron	SNP	C	A	A													cagctgtggagaccttggggCccagggtggctgaggtcctg							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77660947	A	A	77660947	1	1	209	0	1	0	0	0	0	0	0	0	11985	754	26	3		3	PIGK	1	77660947	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	26719685	77660947	171589674	5	164261	692	2									
PIGK	10026	broad.mit.edu	37	chr1	77660949	77660949	+	Intron	SNP	C	A	A													gctgtggagaccttggggccCagggtggctgaggtcctgga							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77660949	A	A	77660949	1	1	209	0	1	0	0	0	0	0	0	0	11985	609	21	2		2	PIGK	1	77660949	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	2	77660949	171589672	6	164262	692	2									
SORT1	6272	broad.mit.edu	37	chr1	109893506	109893506	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttttggcagcgctatcaGgaagggtttagggctctgca	14	7	2	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109893506	A	A	109893506	1	1	209	0	1	0	0	0	0	0	0	0	15049	1015	35	4		4	SORT1	1	109893506	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	32232557	109893506	139357115	7	164263											
RPRD2	23248	broad.mit.edu	37	chr1	150337420	150337420	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgggggtgactagggaAgggaagactggggaaatgga	21	2	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150337420	C	C	150337420	1	2	209	0	1	0	0	0	0	0	0	0	13728	87	3	5		5	RPRD2	1	150337420	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	40443914	150337420	98913201	8	164264											
PIP5K1A	8394	broad.mit.edu	37	chr1	151196536	151196536	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atggaatatgcacgaggcctAtgtgagtatggagaaggaga	15	4	0	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151196536	T	T	151196536	1	4	209	0	1	0	0	0	0	0	0	0	12034	464	16	5		5	PIP5K1A	1	151196536	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	859116	151196536	98054085	9	164265											
RORC	6097	broad.mit.edu	37	chr1	151798208	151798208	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcaacagtcctcttacCattgctgctgtcagggagcc	8	14	3	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151798208	T	T	151798208	1	4	209	0	1	0	0	0	0	0	0	0	13641	609	21	4		4	RORC	1	151798208	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	601672	151798208	97452413	10	164266											
YY1AP1	55249	broad.mit.edu	37	chr1	155650112	155650112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagaattggttcagtcCctcttctagaaggagcatca	10	8	4	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155650112	A	A	155650112	1	1	209	0	1	0	0	0	0	0	0	0	17635	638	22	2		2	YY1AP1	1	155650112	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	3851904	155650112	93600509	11	164267											
RIT1	6016	broad.mit.edu	37	chr1	155874278	155874283	+	In_Frame_Del	DEL	TGGCTG	-	-													cctcatatactggtcccgcaTggctgtaaactctgcctaga							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	155874283	-	-	155874278	7	5	209	1	0	1	0	1	0	0	0	0	13497	1464	51	0	414	0	RIT1	1	155874278	In_Frame_Del	DEL	TGGCTG	TCGA-73-4675-01A-01D-1265-08	224166	155874278	93376343	12	164268											
CD1E	913	broad.mit.edu	37	chr1	158326737	158326737	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcatcttcttaaacacCgtccatgtcccataagggaa	7	12	3	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158326737	A	A	158326737	1	1	209	0	1	0	0	0	0	0	0	0	3008	667	23	1		1	CD1E	1	158326737	3'UTR	SNP	C	TCGA-73-4675-01A-01D-1265-08	2452459	158326737	90923884	13	164269											
FCGR3B	2215	broad.mit.edu	37	chr1	161599819	161599819	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacaccacagcctttgggAgatcttctgaggagccaaga	12	10	2	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161599819	G	G	161599819	3	3	209	1	0	0	0	0	1	0	0	0	5842	304	11	5	645	5	FCGR3B	1	161599819	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08	3273082	161599819	87650802	14	164270											
RGS16	6004	broad.mit.edu	37	chr1	182569399	182569399	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgactcaacctctcttccCggctggcttcctcactgccg	9	17	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182569399	A	A	182569399	1	1	209	0	1	0	0	0	0	0	0	0	13407	667	23	1		1	RGS16	1	182569399	3'UTR	SNP	C	TCGA-73-4675-01A-01D-1265-08	20969580	182569399	66681222	15	164271											
SMG7	9887	broad.mit.edu	37	chr1	183486889	183486889	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaaagaatcgagcaaatccGaatcggagtgaagttcaggc	12	8	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183486889	A	A	183486889	2	1	209	1	0	0	0	0	0	0	0	1	14912	1045	37	4		4	SMG7	1	183486889	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	917490	183486889	65763732	16	164272											
EDEM3	80267	broad.mit.edu	37	chr1	184690453	184690454	+	Frame_Shift_Ins	INS	-	C	C													tttccagaaaactgtcatctINSccaagcaagacataggcttt							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184690454	C	C	184690453	7	5	209	1	0	1	1	0	0	0	0	0	4953	1538	54	0	1925	0	EDEM3	1	184690453	Frame_Shift_Ins	INS	-	TCGA-73-4675-01A-01D-1265-08	1203564	184690453	64560168	17	164273											
TPR	7175	broad.mit.edu	37	chr1	186329117	186329117	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcctgagtttccacataAgcattatagagctgaaagta	8	7	0	4			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186329117	C	C	186329117	2	2	209	1	0	0	0	0	0	0	0	1	16540	59	3	5		5	TPR	1	186329117	Silent	SNP	A	TCGA-73-4675-01A-01D-1265-08	1638664	186329117	62921504	18	164274											
PTPRC	5788	broad.mit.edu	37	chr1	198672355	198672355	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caataggaaattatctttgcTaaagagtttttctttcacct	5	7	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198672355	A	A	198672355	1	1	209	0	1	0	0	0	0	0	0	0	12905	1537	53	5		5	PTPRC	1	198672355	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	12343238	198672355	50578266	19	164275											
NAV1	89796	broad.mit.edu	37	chr1	201777624	201777624	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagaagaaggaggtatcGgagctgcgctctgagctatg	15	8	1	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201777624	T	T	201777624	2	4	209	1	0	0	0	0	0	0	0	1	10277	1103	39	1		1	NAV1	1	201777624	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	3105269	201777624	47472997	20	164276											
CDK18	5129	broad.mit.edu	37	chr1	205496885	205496885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggagcagaggctcagggcCaccttccaccccacatttct	9	15	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205496885	T	T	205496885	1	4	209	0	1	0	0	0	0	0	0	0	3164	609	21	4		4	CDK18	1	205496885	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	3719261	205496885	43753736	21	164277											
IL10	3586	broad.mit.edu	37	chr1	206944677	206944677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatcatgctgcacactcccCcagcaccccgcccctgctct	5	21	2	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206944677	A	A	206944677	1	1	209	0	1	0	0	0	0	0	0	0	7689	638	22	2		2	IL10	1	206944677	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	1447792	206944677	42305944	22	164278											
MIA3	375056	broad.mit.edu	37	chr1	222801788	222801788	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagagagctctagttcagAggaagaaaaagaagatgatg	12	3	2	6			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222801788	T	T	222801788	3	4	209	1	0	0	0	0	1	0	0	0	9658	304	11	5	1240	5	MIA3	1	222801788	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08	15857111	222801788	26448833	23	164279											
RGS7	6000	broad.mit.edu	37	chr1	240933964	240933964	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatagcttggggatatttctCtaaaagtctagaagcaacaa	9	6	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240933964	A	A	240933964	1	1	209	0	1	0	0	0	0	0	0	0	13419	928	32	3		3	RGS7	1	240933964	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	18132176	240933964	8316657	24	164280											
WDR64	128025	broad.mit.edu	37	chr1	241929587	241929587	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtagaaggatataatttgaTagcagctggaaccttaaatg	10	4	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241929587	C	C	241929587	3	2	209	1	0	0	0	0	1	0	0	0	17442	1406	49	5	2043	5	WDR64	1	241929587	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	995623	241929587	7321034	25	164281											
OR2T6	254879	broad.mit.edu	37	chr1	248551785	248551785	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccctctcatctacagtctGaggaacagggatgtgatggg	12	9	3	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248551785	T	T	248551785	2	4	209	1	0	0	0	0	0	0	0	1	11123	1277	45	3		3	OR2T6	1	248551785	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	6622198	248551785	698836	26	164282											
RPS7	6201	broad.mit.edu	37	chr2	3627799	3627799	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaactagatggcagccgGctcataaaggttcatttgga	11	8	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3627799	C	C	3627799	2	2	209	1	0	0	0	0	0	0	0	1	13771	1190	42	4		4	RPS7	2	3627799	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08		3627799	239571574	27	164283											
ID2	3398	broad.mit.edu	37	chr2	8822877	8822877	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtgtttaatggaacttgCtggtctgtggactacaaaaa	10	6	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8822877	A	A	8822877	1	1	209	0	1	0	0	0	0	0	0	0	7560	812	28	3		3	ID2	2	8822877	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	5195078	8822877	234376496	28	164284											
WDR35	57539	broad.mit.edu	37	chr2	20135266	20135266	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttttctggaagtgaaatgGcaaggttctctaacccttca	10	8	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20135266	A	A	20135266	3	1	209	1	0	0	0	0	1	0	0	0	17416	1203	42	4	1027	4	WDR35	2	20135266	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	11312389	20135266	223064107	29	164285											
EPT1	85465	broad.mit.edu	37	chr2	26607932	26607932	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctacagcgtggatcctttgGtcaccttcagatattttaga	8	9	3	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26607932	C	C	26607932	3	2	209	1	0	0	0	0	1	0	0	0	5241	1270	44	4	867	4	EPT1	2	26607932	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	6472666	26607932	216591441	30	164286											
CGREF1	10669	broad.mit.edu	37	chr2	27324165	27324165	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatctcatcattctccacttGaacaatgtgcacctcaaagt	5	12	4	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27324165	T	T	27324165	3	4	209	1	0	0	0	0	1	0	0	0	3335	1299	45	3	218	3	CGREF1	2	27324165	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	716233	27324165	215875208	31	164287											
ZNF513	130557	broad.mit.edu	37	chr2	27600974	27600985	+	In_Frame_Del	DEL	GGGCCCTGGGGC	-	-													aggcaaagcctttgtcactgGggccctggggccccccactg							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27600985	-	-	27600974	7	5	209	1	0	1	0	1	0	0	0	0	18085	1232	43	0	565	0	ZNF513	2	27600974	In_Frame_Del	DEL	GGGCCCTGGGGC	TCGA-73-4675-01A-01D-1265-08	276809	27600974	215598399	32	164288											
HK2	3099	broad.mit.edu	37	chr2	75108761	75108761	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaggaatggtgtatttGgatcgttttaagtgtactgt	13	3	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75108761	T	T	75108761	1	4	209	0	1	0	0	0	0	0	0	0	7258	1363	47	2		2	HK2	2	75108761	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	47507787	75108761	168090612	33	164289											
FAM123C	205147	broad.mit.edu	37	chr2	131519728	131519728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagacccagcagccgtggCtgcagccagggaggggacag	16	14	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131519728	A	A	131519728	3	1	209	1	0	0	0	0	1	0	0	0	5470	797	28	3	85	3	FAM123C	2	131519728	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	56410967	131519728	111679645	34	164290											
MYO3B	140469	broad.mit.edu	37	chr2	171376147	171376147	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgcaacaagtatttctaCcactatggtattttggtgaa	7	6	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171376147	A	A	171376147	1	1	209	0	1	0	0	0	0	0	0	0	10171	522	18	3		3	MYO3B	2	171376147	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	39856419	171376147	71823226	35	164291											
OSBPL6	114880	broad.mit.edu	37	chr2	179248905	179248905	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgctttttctcagaacaggTaagcgccactggactcagtg	10	12	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179248905	C	C	179248905	5	2	209	1	0	0	0	0	0	0	1	0	11375	1652	57	5	2199	5	OSBPL6	2	179248905	Splice_Site	SNP	T	TCGA-73-4675-01A-01D-1265-08	7872758	179248905	63950468	36	164292											
TTN	7273	broad.mit.edu	37	chr2	179640620	179640620	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcttccgactcttcagGcactttttcatgggtaattc	7	12	4	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179640620	T	T	179640620	3	4	209	1	0	0	0	0	1	0	0	0	16861	1203	42	3	105357	3	TTN	2	179640620	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	391715	179640620	63558753	37	164293											
ITGAV	3685	broad.mit.edu	37	chr2	187540632	187540632	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttataagaatcttccaattgAggatatcaccaactccacat	4	10	2	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187540632	T	T	187540632	3	4	209	1	0	0	0	0	1	0	0	0	7958	304	11	5	3067	5	ITGAV	2	187540632	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08	7900012	187540632	55658741	38	164294											
ANKRD44	91526	broad.mit.edu	37	chr2	197951379	197951379	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctcttatttaagcacttGaagcacaactctctgattac	4	11	2	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197951379	A	A	197951379	1	1	209	0	1	0	0	0	0	0	0	0	672	1305	45	4		4	ANKRD44	2	197951379	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	10410747	197951379	45247994	39	164295											
MAP2	4133	broad.mit.edu	37	chr2	210570269	210570269	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtataaattaaagagttacAagaacccaatgttctttttg	6	6	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210570269	G	G	210570269	1	3	209	0	1	0	0	0	0	0	0	0	9327	145	5	5		5	MAP2	2	210570269	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	12618890	210570269	32629104	40	164296											
COL6A3	1293	broad.mit.edu	37	chr2	238267585	238267585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggctgcctggaggaagcGggcttgatgtatatgaggaa	17	5	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238267585	T	T	238267585	1	4	209	0	1	0	0	0	0	0	0	0	3733	1131	39	1		1	COL6A3	2	238267585	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	27697316	238267585	4931788	41	164297											
STAC	6769	broad.mit.edu	37	chr3	36527665	36527665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtctacgagaccctccGcttcggcacctccctggccc	8	21	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36527665	T	T	36527665	3	4	209	1	0	0	0	0	1	0	0	0	15357	1087	38	3	629	3	STAC	3	36527665	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08		36527665	161494765	42	164298											
CELSR3	1951	broad.mit.edu	37	chr3	48687843	48687843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccaatttaggaaaagaCatggctctagcagtcagagt	9	10	2	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48687843	A	A	48687843	1	1	209	0	1	0	0	0	0	0	0	0	3253	493	17	3		3	CELSR3	3	48687843	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	12160178	48687843	149334587	43	164299											
LAMB2	3913	broad.mit.edu	37	chr3	49167754	49167754	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcgcccagctgtgttatGctgacatccatcacacacac	9	14	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49167754	A	A	49167754	3	1	209	1	0	0	0	0	1	0	0	0	8683	1319	46	4	4357	4	LAMB2	3	49167754	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	479911	49167754	148854676	44	164300											
LAMB2	3913	broad.mit.edu	37	chr3	49170269	49170269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcccagggcagaggctgtCccctccctctttcccttgag	10	16	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49170269	A	A	49170269	3	1	209	1	0	0	0	0	1	0	0	0	8683	855	30	3	5492	3	LAMB2	3	49170269	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	2515	49170269	148852161	45	164301											
STAB1	23166	broad.mit.edu	37	chr3	52547713	52547713	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcccacctgtggctaaGctctgctgctgccttccaga	10	15	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52547713	A	A	52547713	1	1	209	0	1	0	0	0	0	0	0	0	15355	986	34	4		4	STAB1	3	52547713	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	3377444	52547713	145474717	46	164302											
SGEF	26084	broad.mit.edu	37	chr3	153839829	153839829	+	Frame_Shift_Del	DEL	T	-	-													tctagcaacagcataaccccTttgtggcggaggcggtcgat							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153839829	-	-	153839829	7	5	209	1	0	1	0	1	0	0	0	0	14318	1596	56	0	50	0	SGEF	3	153839829	Frame_Shift_Del	DEL	T	TCGA-73-4675-01A-01D-1265-08	101292116	153839829	44182601	47	164303											
SI	6476	broad.mit.edu	37	chr3	164777791	164777791	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatccaagattccaatatgCtggcattgctggtagtccaa	9	9	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164777791	T	T	164777791	3	4	209	1	0	0	0	0	1	0	0	0	14410	797	28	4	4594	4	SI	3	164777791	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	10937962	164777791	33244639	48	164304											
MECOM	2122	broad.mit.edu	37	chr3	168833635	168833635	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagccccaccagtcctgtTgaaccaaagtatttttcagc	7	13	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168833635	A	A	168833635	2	1	209	1	0	0	0	0	0	0	0	1	9515	1799	63	5		5	MECOM	3	168833635	Silent	SNP	T	TCGA-73-4675-01A-01D-1265-08	4055844	168833635	29188795	49	164305											
DVL3	1857	broad.mit.edu	37	chr3	183884764	183884764	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatccctgacacagagcGtgagtgtcccaccctgtctc	8	16	1	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183884764	T	T	183884764	5	4	209	1	0	0	0	0	0	0	1	0	4877	1159	40	3	1241	3	DVL3	3	183884764	Splice_Site	SNP	G	TCGA-73-4675-01A-01D-1265-08	15051129	183884764	14137666	50	164306											
NAT8L	339983	broad.mit.edu	37	chr4	2065468	2065468	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcaccgggtgtccctgAccgccctatcccctgcaggc	9	19	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2065468	G	G	2065468	1	3	209	0	1	0	0	0	0	0	0	0	10275	290	10	5		5	NAT8L	4	2065468	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08		2065468	189088808	51	164307											
PPP2R2C	5522	broad.mit.edu	37	chr4	6380272	6380272	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgctgtacacgtcgtattCgccctggctgtggggcgcat	14	11	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6380272	A	A	6380272	4	1	209	1	0	0	0	0	0	1	0	0	12487	893	31	3	1175	3	PPP2R2C	4	6380272	Nonsense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	4314804	6380272	184774004	52	164308											
AMBN	258	broad.mit.edu	37	chr4	71465166	71465166	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattccatctcaaaaaaaaaAagaaaaaggaaaaggaaaac	6	5	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71465166	T	T	71465166	1	4	209	0	1	0	0	0	0	0	0	0	563	29	1	5		5	AMBN	4	71465166	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	65084894	71465166	119689110	53	164309											
FAT4	79633	broad.mit.edu	37	chr4	126411653	126411653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacgttgcttttgatgaccCtgacaatatccctccctatg	7	12	0	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126411653	A	A	126411653	3	1	209	1	0	0	0	0	1	0	0	0	5749	681	24	2	13742	2	FAT4	4	126411653	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	54946487	126411653	64742623	54	164310											
FSTL5	56884	broad.mit.edu	37	chr4	162577480	162577480	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aactatatttatgtactcacAttgatgtcttccaaatctaa	3	8	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	162577480	G	G	162577480	2	3	209	1	0	0	0	0	0	0	0	1	6140	231	8	5		5	FSTL5	4	162577480	Silent	SNP	A	TCGA-73-4675-01A-01D-1265-08	36165827	162577480	28576796	55	164311											
SLC9A3	6550	broad.mit.edu	37	chr5	482625	482625	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggctcccctcgcgggcGgggccgagaccccagggctg	16	18	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	482625	T	T	482625	1	4	209	0	1	0	0	0	0	0	0	0	14827	1131	39	1		1	SLC9A3	5	482625	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08		482625	180432635	56	164312											
CTNND2	1501	broad.mit.edu	37	chr5	10973602	10973602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggccgggtagtggctcGtttcatagttcagttcactg	15	8	3	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10973602	T	T	10973602	3	4	209	1	0	0	0	0	1	0	0	0	4054	1145	40	3	40	3	CTNND2	5	10973602	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	10490977	10973602	169941658	57	164313											
TRIO	7204	broad.mit.edu	37	chr5	14390990	14390990	+	Intron	DEL	T	-	-													gttatgatttaaatgagatcTttttttttttggcttacagg					rs78797841		TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	14390990	-	-	14390990	6	5	209	0	1	1	0	1	0	0	0	0	16677	1624	56	0		0	TRIO	5	14390990	Intron	DEL	T	TCGA-73-4675-01A-01D-1265-08	3417388	14390990	166524270	58	164314											
C5orf42	65250	broad.mit.edu	37	chr5	37210110	37210110	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcaacttcgggaagaaatAtgtcaaaagttgaagttttt	10	4	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37210110	G	G	37210110	1	3	209	0	1	0	0	0	0	0	0	0	2324	464	16	5		5	C5orf42	5	37210110	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	22819120	37210110	143705150	59	164315											
C7	730	broad.mit.edu	37	chr5	40937762	40937762	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaaagatttctacaggctGagtggaaatgtcctgtccta	11	7	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40937762	T	T	40937762	2	4	209	1	0	0	0	0	0	0	0	1	2400	1277	45	3		3	C7	5	40937762	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	3727652	40937762	139977498	60	164316											
C5orf34	375444	broad.mit.edu	37	chr5	43495092	43495092	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtctttcactactaaacttAaatggccaattgaaacaaac	4	9	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43495092	T	T	43495092	1	4	209	0	1	0	0	0	0	0	0	0	2316	377	13	5		5	C5orf34	5	43495092	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	2557330	43495092	137420168	61	164317											
ITGA2	3673	broad.mit.edu	37	chr5	52351990	52351990	+	Intron	DEL	T	-	-													agcattgaaggtaaaaaaaaTaacctcctttcaagaatttt					rs3212524		TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52351990	-	-	52351990	6	5	209	0	1	1	0	1	0	0	0	0	7945	1421	49	0		0	ITGA2	5	52351990	Intron	DEL	T	TCGA-73-4675-01A-01D-1265-08	8856898	52351990	128563270	62	164318											
EPB41L4A	64097	broad.mit.edu	37	chr5	111519749	111519749	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatcgcctgttgttggggTcggcttggtttttttccttt	13	7	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111519749	A	A	111519749	3	1	209	1	0	0	0	0	1	0	0	0	5197	1667	58	5	498	5	EPB41L4A	5	111519749	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	59167759	111519749	69395511	63	164319											
APC	324	broad.mit.edu	37	chr5	112111219	112111219	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttgagtaattcattattaGcactttaggtagagaagttt	8	3	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112111219	A	A	112111219	1	1	209	0	1	0	0	0	0	0	0	0	765	986	34	4		4	APC	5	112111219	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	591470	112111219	68804041	64	164320											
TMEM173	340061	broad.mit.edu	37	chr5	138861279	138861279	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggatggatggatgcaggctgGagtggggcatctgtgggcac	20	6	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138861279	C	C	138861279	3	2	209	1	0	0	0	0	1	0	0	0	16212	1174	41	4	1152	4	TMEM173	5	138861279	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	26750060	138861279	42053981	65	164321											
COL23A1	91522	broad.mit.edu	37	chr5	177683772	177683772	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccctcctgggacttaaaaGggcaaatgagagctgaaacc	12	10	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177683772	C	C	177683772	1	2	209	0	1	0	0	0	0	0	0	0	3714	1015	35	4		4	COL23A1	5	177683772	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	38822493	177683772	3231488	66	164322											
BAT2	7916	broad.mit.edu	37	chr6	31599748	31599748	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtatgaggaaatccccaagCggcgccggcagcggggctca	15	12	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31599748	T	T	31599748	3	4	209	1	0	0	0	0	1	0	0	0	1324	759	27	4	3356	4	BAT2	6	31599748	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08		31599748	139515319	67	164323											
TBX18	9096	broad.mit.edu	37	chr6	85446869	85446869	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccacataggagggagtcCtgggcggggcaaaggtctca	16	11	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85446869	T	T	85446869	3	4	209	1	0	0	0	0	1	0	0	0	15775	681	24	4	469	4	TBX18	6	85446869	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	53847121	85446869	85668198	68	164324											
RBM16	22828	broad.mit.edu	37	chr6	155114064	155114065	+	Frame_Shift_Ins	INS	-	A	A													ggattccgcctccagttgtcINSacacctgttttggccagcac							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155114065	A	A	155114064	7	5	209	1	0	1	1	0	0	0	0	0	13226	813	29	0	447	0	RBM16	6	155114064	Frame_Shift_Ins	INS	-	TCGA-73-4675-01A-01D-1265-08	69667195	155114064	16001003	69	164325											
GPER	2852	broad.mit.edu	37	chr7	1132346	1132346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcatctacagctttctcGgggagaccttcagggacaag	10	13	4	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1132346	T	T	1132346	3	4	209	1	0	0	0	0	1	0	0	0	6672	1116	39	1	984	1	GPER	7	1132346	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08		1132346	158006317	70	164326											
STK31	56164	broad.mit.edu	37	chr7	23751905	23751905	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtaacattttgggcccaGgtaaatagcaaactggttga	11	7	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23751905	T	T	23751905	3	4	209	1	0	0	0	0	1	0	0	0	15414	1014	35	2	160	2	STK31	7	23751905	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	22619559	23751905	135386758	71	164327											
HECW1	23072	broad.mit.edu	37	chr7	43351739	43351739	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcacttttacatatgctgTcacattttaataaactctac	2	9	3	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43351739	C	C	43351739	1	2	209	0	1	0	0	0	0	0	0	0	7109	1682	58	5		5	HECW1	7	43351739	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	19599834	43351739	115786924	72	164328											
POR	5447	broad.mit.edu	37	chr7	75573272	75573272	+	Intron	DEL	A	-	-													aaagggagaattatcaacttAaaaaaaaaatagccaaggaa							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75573272	-	-	75573272	6	5	209	0	1	1	0	1	0	0	0	0	12352	377	13	0		0	POR	7	75573272	Intron	DEL	A	TCGA-73-4675-01A-01D-1265-08	32221533	75573272	83565391	73	164329											
SLC12A9	56996	broad.mit.edu	37	chr7	100454815	100454815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtgagctgggtgctgcCgtggcagggatctcggggtg	22	8	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100454815	A	A	100454815	1	1	209	0	1	0	0	0	0	0	0	0	14503	667	23	1		1	SLC12A9	7	100454815	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	24881543	100454815	58683848	74	164330											
IMMP2L	83943	broad.mit.edu	37	chr7	110526548	110526548	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctattccagtataaatttcaTgatcagtcttggctgagtta	7	7	3	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110526548	C	C	110526548	1	2	209	0	1	0	0	0	0	0	0	0	7787	1479	51	5		5	IMMP2L	7	110526548	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	10071733	110526548	48612115	75	164331											
SLC13A1	6561	broad.mit.edu	37	chr7	122768953	122768953	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggtctcgactaaaccatAgcagagccattataatgaag	10	9	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122768953	C	C	122768953	3	2	209	1	0	0	0	0	1	0	0	0	14504	420	15	5	732	5	SLC13A1	7	122768953	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08	12242405	122768953	36369710	76	164332											
CSMD1	64478	broad.mit.edu	37	chr8	2836188	2836188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgccatacaggtcaaggCtgaagatcccagcaagtaaa	9	9	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2836188	A	A	2836188	3	1	209	1	0	0	0	0	1	0	0	0	3978	797	28	3	2246	3	CSMD1	8	2836188	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08		2836188	143527834	77	164333											
SLC25A37	51312	broad.mit.edu	37	chr8	23429006	23429006	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccatccacttcatcaccTatgagttcctgcaggagcag	8	13	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23429006	C	C	23429006	3	2	209	1	0	0	0	0	1	0	0	0	14615	1522	53	5	669	5	SLC25A37	8	23429006	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	20592818	23429006	122935016	78	164334											
C8orf41	80185	broad.mit.edu	37	chr8	33361019	33361019	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcttcctcctcaggtccaTcataaacctccagataacca	4	15	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33361019	C	C	33361019	3	2	209	1	0	0	0	0	1	0	0	0	2453	1435	50	5	351	5	C8orf41	8	33361019	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	9932013	33361019	113003003	79	164335											
ADAM32	203102	broad.mit.edu	37	chr8	39008874	39008874	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgattaaaagcacttaaAattgtattcataatttcaca	3	5	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39008874	T	T	39008874	1	4	209	0	1	0	0	0	0	0	0	0	249	29	1	5		5	ADAM32	8	39008874	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	5647855	39008874	107355148	80	164336											
KIAA0146	23514	broad.mit.edu	37	chr8	48424330	48424330	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacagctccatgctctttgGcacctttaaagagatcatcc	6	13	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48424330	A	A	48424330	1	1	209	0	1	0	0	0	0	0	0	0	8227	1218	42	4		4	KIAA0146	8	48424330	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	9415456	48424330	97939692	81	164337											
UBR5	51366	broad.mit.edu	37	chr8	103269856	103269856	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcttgtgaaatttttaacTtacaagatcttgtcgttctg	6	6	3	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103269856	G	G	103269856	1	3	209	0	1	0	0	0	0	0	0	0	17031	1624	56	5		5	UBR5	8	103269856	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	54845526	103269856	43094166	82	164338											
ENPP2	5168	broad.mit.edu	37	chr8	120599260	120599260	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggcctgggcagggcagaGgcgggacaactggaaacact	17	9	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120599260	A	A	120599260	1	1	209	0	1	0	0	0	0	0	0	0	5172	1015	35	4		4	ENPP2	8	120599260	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	17329404	120599260	25764762	83	164339											
KLHL38	340359	broad.mit.edu	37	chr8	124659239	124659239	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattttgaaccacgagtttcTggaaatgtgataaacctgag	9	7	1	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124659239	C	C	124659239	3	2	209	1	0	0	0	0	1	0	0	0	8461	1588	55	5	387	5	KLHL38	8	124659239	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	4059979	124659239	21704783	84	164340											
RNF139	11236	broad.mit.edu	37	chr8	125498172	125498172	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagctgcaacttcagtgttGgtgaattattatgcttcttt	8	6	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125498172	A	A	125498172	2	1	209	1	0	0	0	0	0	0	0	1	13553	1339	47	4		4	RNF139	8	125498172	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	838933	125498172	20865850	85	164341											
ADCY8	114	broad.mit.edu	37	chr8	132051638	132051638	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctggttgatggaaatgacCgccagccggggtatgaccac	13	11	0	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132051638	T	T	132051638	2	4	209	1	0	0	0	0	0	0	0	1	300	639	23	4		4	ADCY8	8	132051638	Silent	SNP	C	TCGA-73-4675-01A-01D-1265-08	6553466	132051638	14312384	86	164342											
FAM135B	51059	broad.mit.edu	37	chr8	139151255	139151255	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggcttagttggtagaggAaacatttgcgcaaatcagca	11	6	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	139151255	G	G	139151255	3	3	209	1	0	0	0	0	1	0	0	0	5495	246	9	5	357	5	FAM135B	8	139151255	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08	7099617	139151255	7212767	87	164343											
GLDC	2731	broad.mit.edu	37	chr9	6556069	6556069	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttccctcaggcaggaagCctctcaagaagtcagaattt	10	10	3	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6556069	A	A	6556069	1	1	209	0	1	0	0	0	0	0	0	0	6497	754	26	3		3	GLDC	9	6556069	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08		6556069	134657362	88	164344											
TOPORS	10210	broad.mit.edu	37	chr9	32544367	32544367	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagtaacctgataatagagGaatgactaaatagtctcaac	7	7	2	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32544367	T	T	32544367	1	4	209	0	1	0	0	0	0	0	0	0	16494	1189	41	3		3	TOPORS	9	32544367	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	25988298	32544367	108669064	89	164345											
SPIN1	10927	broad.mit.edu	37	chr9	91025542	91025542	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atagtattggcctccaccacCataggggccagagcttctgc	10	13	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91025542	G	G	91025542	1	3	209	0	1	0	0	0	0	0	0	0	15170	609	21	4		4	SPIN1	9	91025542	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	58481175	91025542	50187889	90	164346											
PTPN3	5774	broad.mit.edu	37	chr9	112225553	112225553	+	Intron	DEL	A	-	-													agcattaattcaggaaaagtAaaaaaaaaaagtagagaact							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112225553	-	-	112225553	6	5	209	0	1	1	0	1	0	0	0	0	12897	377	13	0		0	PTPN3	9	112225553	Intron	DEL	A	TCGA-73-4675-01A-01D-1265-08	21200011	112225553	28987878	91	164347											
PTGS1	5742	broad.mit.edu	37	chr9	125148924	125148924	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccaggagtacagctaCgagcagttcttgttcaacac	10	12	2	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125148924	T	T	125148924	2	4	209	1	0	0	0	0	0	0	0	1	12861	547	19	4		4	PTGS1	9	125148924	Silent	SNP	C	TCGA-73-4675-01A-01D-1265-08	12923371	125148924	16064507	92	164348											
GARNL3	84253	broad.mit.edu	37	chr9	130062387	130062387	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcacttctttacttctccAagatcttcagtgctgtcatc	4	12	6	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130062387	C	C	130062387	1	2	209	0	1	0	0	0	0	0	0	0	6303	145	5	5		5	GARNL3	9	130062387	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	4913463	130062387	11151044	93	164349											
GTF3C5	9328	broad.mit.edu	37	chr9	135917627	135917627	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggggtgctgggcactgagGcccactccgaggtcacattt	14	11	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135917627	A	A	135917627	3	1	209	1	0	0	0	0	1	0	0	0	6941	1203	42	4	313	4	GTF3C5	9	135917627	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	5855240	135917627	5295804	94	164350											
CUBN	8029	broad.mit.edu	37	chr10	17171411	17171411	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccacttttttctctgcaCatttctcagagatacctcct	4	14	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17171411	G	G	17171411	1	3	209	0	1	0	0	0	0	0	0	0	4084	493	17	4		4	CUBN	10	17171411	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08		17171411	118363336	95	164351											
MYPN	84665	broad.mit.edu	37	chr10	69934146	69934146	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaagaaagcctcttagtgtCtcacccctctgtgcaaacca	6	14	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69934146	G	G	69934146	3	3	209	1	0	0	0	0	1	0	0	0	10192	913	32	4	2335	4	MYPN	10	69934146	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	52762735	69934146	65600601	96	164352											
HKDC1	80201	broad.mit.edu	37	chr10	70987200	70987200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaagtacctaaggtttgcCcctgtaccttggcttctctc	7	13	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70987200	A	A	70987200	1	1	209	0	1	0	0	0	0	0	0	0	7260	638	22	2		2	HKDC1	10	70987200	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	1053054	70987200	64547547	97	164353											
PKD2L1	9033	broad.mit.edu	37	chr10	102057077	102057077	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtttagggaagggtctcaTgcacaagagacgggaaccag	15	7	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102057077	C	C	102057077	1	2	209	0	1	0	0	0	0	0	0	0	12062	1479	51	5		5	PKD2L1	10	102057077	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	31069877	102057077	33477670	98	164354											
MUC5B	727897	broad.mit.edu	37	chr11	1248466	1248466	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccctgggcttggggtcaCggggcttggggcatgttgcc	17	12	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1248466	T	T	1248466	1	4	209	0	1	0	0	0	0	0	0	0	10073	551	19	4		4	MUC5B	11	1248466	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08		1248466	133758050	99	164355											
OR51E1	143503	broad.mit.edu	37	chr11	4673703	4673703	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggatctgacagtggcttAtctttgcattccagcctcta	8	10	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4673703	T	T	4673703	1	4	209	0	1	0	0	0	0	0	0	0	11188	464	16	5		5	OR51E1	11	4673703	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	3425237	4673703	130332813	100	164356											
HBG2	3048	broad.mit.edu	37	chr11	5593035	5593035	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcagtcaatcacttcaAtttttccatactggtcaaaa	4	11	5	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5593035	T	T	5593035	1	4	209	0	1	0	0	0	0	0	0	0	7049	116	4	5		5	HBG2	11	5593035	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	919332	5593035	129413481	101	164357			1	128		2	2	15	N	G_A	8.682725e-05
HBG2	3048	broad.mit.edu	37	chr11	5593049	5593049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcaatttttccatactgGtcaaaataatctcttaggtg	5	8	3	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5593049	T	T	5593049	1	4	209	0	1	0	0	0	0	0	0	0	7049	1276	44	3		3	HBG2	11	5593049	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	14	5593049	129413467	102	164358			1	128		2	2	15	N	G_A	8.682725e-05
DCHS1	8642	broad.mit.edu	37	chr11	6647528	6647528	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgaaggcaaaggctcCtccactctctgcctgcagca	9	15	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6647528	T	T	6647528	3	4	209	1	0	0	0	0	1	0	0	0	4320	690	24	4	3472	4	DCHS1	11	6647528	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	1054479	6647528	128358988	103	164359											
OR10A6	390093	broad.mit.edu	37	chr11	7949674	7949674	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaacactgctggggtttcaCaagatatatggttaatttca	8	7	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7949674	T	T	7949674	3	4	209	1	0	0	0	0	1	0	0	0	10988	478	17	4	411	4	OR10A6	11	7949674	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	1302146	7949674	127056842	104	164360											
TEAD1	7003	broad.mit.edu	37	chr11	12926487	12926487	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaggtcagggtcaggctgtCtggtacatcaataatttatt	11	6	4	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12926487	G	G	12926487	1	3	209	0	1	0	0	0	0	0	0	0	15860	928	32	4		4	TEAD1	11	12926487	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	4976813	12926487	122080029	105	164361											
HIPK3	10114	broad.mit.edu	37	chr11	33373334	33373334	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgtctgttctgttgtggtGccaccagtggaactagaaaa	12	8	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33373334	C	C	33373334	2	2	209	1	0	0	0	0	0	0	0	1	7185	1306	46	4		4	HIPK3	11	33373334	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	20446847	33373334	101633182	106	164362											
NR1H3	10062	broad.mit.edu	37	chr11	47283259	47283259	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaccagattgccctgctGaagacctctgcgatcgaggt	13	11	1	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47283259	A	A	47283259	2	1	209	1	0	0	0	0	0	0	0	1	10713	1277	45	4		4	NR1H3	11	47283259	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	13909925	47283259	87723257	107	164363											
ASRGL1	80150	broad.mit.edu	37	chr11	62139191	62139191	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcccagcactttgggaggccGaggcgggcagatcacaaggt	15	11	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62139191	T	T	62139191	1	4	209	0	1	0	0	0	0	0	0	0	1064	1073	37	3		3	ASRGL1	11	62139191	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	14855932	62139191	72867325	108	164364											
INTS5	80789	broad.mit.edu	37	chr11	62416429	62416429	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgggggaatccttgaaggtGttgctgcagctggctcagca	15	9	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62416429	A	A	62416429	3	1	209	1	0	0	0	0	1	0	0	0	7851	1377	48	4	1940	4	INTS5	11	62416429	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	277238	62416429	72590087	109	164365											
LGALS12	85329	broad.mit.edu	37	chr11	63276240	63276240	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcactttgagagcctcacCtcccagtaggtttcaggtgg	11	13	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63276240	T	T	63276240	1	4	209	0	1	0	0	0	0	0	0	0	8811	696	24	4		4	LGALS12	11	63276240	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	859811	63276240	71730276	110	164366											
IGHMBP2	3508	broad.mit.edu	37	chr11	68682465	68682465	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccagattgttgcagatAtcaggaaggacatcgaccag	12	9	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68682465	G	G	68682465	3	3	209	1	0	0	0	0	1	0	0	0	7661	449	16	5	908	5	IGHMBP2	11	68682465	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08	5406225	68682465	66324051	111	164367											
DYNC2H1	79659	broad.mit.edu	37	chr11	102999641	102999641	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacttttactttgtaggtGgcacatttttataattctat	7	5	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102999641	T	T	102999641	2	4	209	1	0	0	0	0	0	0	0	1	4886	1335	47	2		2	DYNC2H1	11	102999641	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	34317176	102999641	32006875	112	164368											
DYNC2H1	79659	broad.mit.edu	37	chr11	103091300	103091300	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataatttttcaagagttaatGatttaaagaaatatataatt	4	1	1	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103091300	C	C	103091300	1	2	209	0	1	0	0	0	0	0	0	0	4886	1305	45	4		4	DYNC2H1	11	103091300	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	91659	103091300	31915216	113	164369											
TTC12	54970	broad.mit.edu	37	chr11	113193902	113193902	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttgctttctattgctctAtttttttctttaagatcttt	3	6	4	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113193902	G	G	113193902	1	3	209	0	1	0	0	0	0	0	0	0	16805	464	16	5		5	TTC12	11	113193902	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	10102602	113193902	21812614	114	164370											
ROBO3	64221	broad.mit.edu	37	chr11	124735451	124735451	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggcccccagcccccagtCccgatcccagctgggtcgag	12	19	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124735451	T	T	124735451	1	4	209	0	1	0	0	0	0	0	0	0	13626	870	30	4		4	ROBO3	11	124735451	5'UTR	SNP	C	TCGA-73-4675-01A-01D-1265-08	11541549	124735451	10271065	115	164371											
PKNOX2	63876	broad.mit.edu	37	chr11	125301293	125301293	+	3'UTR	SNP	G	C	C													tgactccctggagtagtcggGcagcccagatggcactgatc							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125301293	C	C	125301293	1	2	209	0	1	0	0	0	0	0	0	0	12078	1218	42	4		4	PKNOX2	11	125301293	3'UTR	SNP	G	TCGA-73-4675-01A-01D-1265-08	565842	125301293	9705223	116	164372	693	2									
PKNOX2	63876	broad.mit.edu	37	chr11	125301295	125301295	+	3'UTR	SNP	A	T	T													actccctggagtagtcgggcAgcccagatggcactgatcac							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125301295	T	T	125301295	1	4	209	0	1	0	0	0	0	0	0	0	12078	203	7	5		5	PKNOX2	11	125301295	3'UTR	SNP	A	TCGA-73-4675-01A-01D-1265-08	2	125301295	9705221	117	164373	693	2									
PATE2	399967	broad.mit.edu	37	chr11	125647222	125647222	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaattcaggttcagggaaGagaaaaagagcgtagtggtt	13	4	2	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125647222	C	C	125647222	1	2	209	0	1	0	0	0	0	0	0	0	11568	957	33	4		4	PATE2	11	125647222	3'UTR	SNP	G	TCGA-73-4675-01A-01D-1265-08	345927	125647222	9359294	118	164374											
IGSF9B	22997	broad.mit.edu	37	chr11	133790096	133790096	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggctaggccggggccggGgctggggctcataccaccgg	20	12	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133790096	C	C	133790096	3	2	209	1	0	0	0	0	1	0	0	0	7676	1232	43	4	533	4	IGSF9B	11	133790096	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	8142874	133790096	1216420	119	164375											
ADAMTS20	80070	broad.mit.edu	37	chr12	43769120	43769120	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacaacatataccaacataTtgtttgacgttcataagcaa	4	9	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43769120	C	C	43769120	1	2	209	0	1	0	0	0	0	0	0	0	266	1508	52	5		5	ADAMTS20	12	43769120	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08		43769120	90082775	120	164376											
ARID2	196528	broad.mit.edu	37	chr12	46231201	46231201	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatttttaaagatgagagGtgagttttcactgaagtatt	10	2	1	5			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46231201	A	A	46231201	5	1	209	1	0	0	0	0	0	0	1	0	917	1275	44	4	1155	4	ARID2	12	46231201	Splice_Site	SNP	G	TCGA-73-4675-01A-01D-1265-08	2462081	46231201	87620694	121	164377											
KRT6A	3853	broad.mit.edu	37	chr12	52886388	52886388	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaggtgttgctcctctggtCtggggaccctgaagtgcccc	14	12	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52886388	G	G	52886388	1	3	209	0	1	0	0	0	0	0	0	0	8551	928	32	4		4	KRT6A	12	52886388	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	6655187	52886388	80965507	122	164378											
STAB2	55576	broad.mit.edu	37	chr12	104118709	104118709	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcggtagagctggcaaactAactggtctaatccccatccc	8	13	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104118709	T	T	104118709	1	4	209	0	1	0	0	0	0	0	0	0	15356	377	13	5		5	STAB2	12	104118709	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	51232321	104118709	29733186	123	164379											
TCTN2	79867	broad.mit.edu	37	chr12	124163706	124163706	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcggaatgtttcttagCtgaatttttctgttgtgtgt	10	4	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124163706	A	A	124163706	1	1	209	0	1	0	0	0	0	0	0	0	15845	812	28	3		3	TCTN2	12	124163706	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	20044997	124163706	9688189	124	164380											
OLFM4	10562	broad.mit.edu	37	chr13	53623968	53623968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaggtttggctcttctcCatcagaaccactgttgttat	10	9	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53623968	A	A	53623968	1	1	209	0	1	0	0	0	0	0	0	0	10950	609	21	2		2	OLFM4	13	53623968	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08		53623968	61545910	125	164381											
FAM155A	728215	broad.mit.edu	37	chr13	107862819	107862819	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaagtgcggaaaactacCagccgcatcttcaaggttat	10	9	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107862819	G	G	107862819	1	3	209	0	1	0	0	0	0	0	0	0	5511	609	21	4		4	FAM155A	13	107862819	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	54238851	107862819	7307059	126	164382											
MYH6	4624	broad.mit.edu	37	chr14	23875078	23875078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggacacagggacttgGccttgctccccttgctctga	10	15	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23875078	T	T	23875078	1	4	209	0	1	0	0	0	0	0	0	0	10132	1218	42	3		3	MYH6	14	23875078	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08		23875078	83474462	127	164383											
IPO4	79711	broad.mit.edu	37	chr14	24655208	24655208	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcacgcttctgaaaccCcagcaagagcctgcccattc	9	15	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24655208	A	A	24655208	1	1	209	0	1	0	0	0	0	0	0	0	7865	638	22	2		2	IPO4	14	24655208	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	780130	24655208	82694332	128	164384											
NFATC4	4776	broad.mit.edu	37	chr14	24839714	24839714	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccaggaggttcccggaaGgaggtggctggcatggacta	16	10	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24839714	A	A	24839714	2	1	209	1	0	0	0	0	0	0	0	1	10460	991	35	4		4	NFATC4	14	24839714	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	184506	24839714	82509826	129	164385			2	129		2	2	12	G		6.822205e-05
NFATC4	4776	broad.mit.edu	37	chr14	24839725	24839725	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccggaaggaggtggctgGcatggactacctggcagtgc	16	10	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24839725	A	A	24839725	3	1	209	1	0	0	0	0	1	0	0	0	10460	1203	42	4	1320	4	NFATC4	14	24839725	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	11	24839725	82509815	130	164386			2	129		2	2	12	G		6.822205e-05
HECTD1	25831	broad.mit.edu	37	chr14	31619167	31619167	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagaaaaaaaccaaactgtaGaaactaggaaaatattttaa	6	4	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31619167	C	C	31619167	1	2	209	0	1	0	0	0	0	0	0	0	7106	957	33	4		4	HECTD1	14	31619167	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	6779442	31619167	75730373	131	164387											
FAM179B	23116	broad.mit.edu	37	chr14	45431925	45431925	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaggacactcggctccttCaactcctccgcactgcccgg	9	17	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45431925	G	G	45431925	3	3	209	1	0	0	0	0	1	0	0	0	5551	827	29	4	303	4	FAM179B	14	45431925	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	13812758	45431925	61917615	132	164388											
SYNE2	23224	broad.mit.edu	37	chr14	64653214	64653214	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgaaggcggacttaaccCggcacgttctcgtggaagat	12	10	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64653214	A	A	64653214	2	1	209	1	0	0	0	0	0	0	0	1	15565	643	23	1		1	SYNE2	14	64653214	Silent	SNP	C	TCGA-73-4675-01A-01D-1265-08	19221289	64653214	42696326	133	164389											
RGS6	9628	broad.mit.edu	37	chr14	72943385	72943385	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatgagtcattggactagCtgacccctaagccaccctcc	9	14	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72943385	T	T	72943385	1	4	209	0	1	0	0	0	0	0	0	0	13418	812	28	4		4	RGS6	14	72943385	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	8290171	72943385	34406155	134	164390											
ITPKA	3706	broad.mit.edu	37	chr15	41793911	41793911	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgctactgcctggcgcggcTgatggctgacgcgctgcgcg	17	14	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41793911	G	G	41793911	3	3	209	1	0	0	0	0	1	0	0	0	7987	1580	55	5	675	5	ITPKA	15	41793911	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08		41793911	60737481	135	164391											
FBN1	2200	broad.mit.edu	37	chr15	48748734	48748734	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actatttctagagcttaatgCatttctgaaatttcaatgtt	5	6	3	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48748734	G	G	48748734	1	3	209	0	1	0	0	0	0	0	0	0	5759	725	25	4		4	FBN1	15	48748734	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	6954823	48748734	53782658	136	164392											
LBXCOR1	390598	broad.mit.edu	37	chr15	68125572	68125572	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagcggaaggcgcgctAtgccatccagcagaaattga	13	11	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68125572	G	G	68125572	3	3	209	1	0	0	0	0	1	0	0	0	8727	449	16	5	2682	5	LBXCOR1	15	68125572	Missense_Mutation	SNP	A	TCGA-73-4675-01A-01D-1265-08	19376838	68125572	34405820	137	164393											
AKAP13	11214	broad.mit.edu	37	chr15	86286756	86286756	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataccaagctgatgaggatcCcatcgttcttccccagtcct	7	14	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86286756	G	G	86286756	3	3	209	1	0	0	0	0	1	0	0	0	449	623	22	4	8300	4	AKAP13	15	86286756	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	18161184	86286756	16244636	138	164394											
PKD1	5310	broad.mit.edu	37	chr16	2158372	2158372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtgtctgaccacacgcGgtatgagccaccctcaatga	10	14	2	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2158372	T	T	2158372	3	4	209	1	0	0	0	0	1	0	0	0	12058	1116	39	1	6243	1	PKD1	16	2158372	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08		2158372	88196381	139	164395											
ABCA3	21	broad.mit.edu	37	chr16	2373951	2373951	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgccaccgagtgttcaGgatccctggagggccgccaa	14	12	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2373951	T	T	2373951	1	4	209	0	1	0	0	0	0	0	0	0	33	1015	35	2		2	ABCA3	16	2373951	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	215579	2373951	87980802	140	164396											
GRIN2A	2903	broad.mit.edu	37	chr16	9862489	9862489	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgctatttttctcatgTcccgcctgctgcacccactc	6	16	2	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9862489	C	C	9862489	1	2	209	0	1	0	0	0	0	0	0	0	6845	1682	58	5		5	GRIN2A	16	9862489	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	7488538	9862489	80492264	141	164397											
SMG1	23049	broad.mit.edu	37	chr16	18827946	18827946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatattagtaactcaagCtgacacaaagagaacctcca	6	9	1	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18827946	A	A	18827946	1	1	209	0	1	0	0	0	0	0	0	0	14909	812	28	3		3	SMG1	16	18827946	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	8965457	18827946	71526807	142	164398											
NOD2	64127	broad.mit.edu	37	chr16	50733935	50733935	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcaccaagactgatttgtCctcatgaagtcagcctgtgg	10	10	3	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50733935	T	T	50733935	1	4	209	0	1	0	0	0	0	0	0	0	10612	870	30	4		4	NOD2	16	50733935	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	31905989	50733935	39620818	143	164399											
NLRC5	84166	broad.mit.edu	37	chr16	57073747	57073747	+	Frame_Shift_Del	DEL	G	-	-													caggagccagaggagcagaaGgggccccaggagaggtaggg							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57073747	-	-	57073747	7	5	209	1	0	1	0	1	0	0	0	0	10565	991	35	0	2910	0	NLRC5	16	57073747	Frame_Shift_Del	DEL	G	TCGA-73-4675-01A-01D-1265-08	6339812	57073747	33281006	144	164400											
TMCO7	79613	broad.mit.edu	37	chr16	68894367	68894367	+	Frame_Shift_Del	DEL	A	-	-													cactttggggatatcgcagcAggtctgtgccaactgggatt							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68894367	-	-	68894367	7	5	209	1	0	1	0	1	0	0	0	0	16124	175	7	0	681	0	TMCO7	16	68894367	Frame_Shift_Del	DEL	A	TCGA-73-4675-01A-01D-1265-08	11820620	68894367	21460386	145	164401											
PHLPP2	23035	broad.mit.edu	37	chr16	71692397	71692397	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaatccattacataaattCtggtcccaaactggagcaca	7	10	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71692397	A	A	71692397	1	1	209	0	1	0	0	0	0	0	0	0	11950	928	32	3		3	PHLPP2	16	71692397	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	2798030	71692397	18662356	146	164402											
KIAA0182	23199	broad.mit.edu	37	chr16	85704643	85704643	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttacagacacaatgtagacGactggaggcccggcactaca	11	11	0	2	rs2303203		TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85704643	A	A	85704643	3	1	209	1	0	0	0	0	1	0	0	0	8229	1058	37	4	3516	4	KIAA0182	16	85704643	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	14012246	85704643	4650110	147	164403											
ZCCHC14	23174	broad.mit.edu	37	chr16	87447789	87447789	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgtgtacgagtaaccCacctgcccggcacacgggcc	10	17	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87447789	G	G	87447789	1	3	209	0	1	0	0	0	0	0	0	0	17709	609	21	4		4	ZCCHC14	16	87447789	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	1743146	87447789	2906964	148	164404											
TCF25	22980	broad.mit.edu	37	chr16	89962363	89962363	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtggttgctgtgtgtggcCatgacaccctcccctggcgt	13	14	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89962363	T	T	89962363	1	4	209	0	1	0	0	0	0	0	0	0	15815	609	21	4		4	TCF25	16	89962363	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	2514574	89962363	392390	149	164405											
AIPL1	23746	broad.mit.edu	37	chr17	6328905	6328905	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctctgtggatgactgtgCgggtggctctgtgggtggct	19	7	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6328905	T	T	6328905	3	4	209	1	0	0	0	0	1	0	0	0	436	768	27	4	128	4	AIPL1	17	6328905	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08		6328905	74866305	150	164406											
NEURL4	84461	broad.mit.edu	37	chr17	7229743	7229743	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcacccccgcccctgcCcggggctggtacctgactgg	13	19	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7229743	T	T	7229743	1	4	209	0	1	0	0	0	0	0	0	0	10442	638	22	4		4	NEURL4	17	7229743	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	900838	7229743	73965467	151	164407											
NCOR1	9611	broad.mit.edu	37	chr17	16068234	16068234	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaatatggaaaactcaaaaAtatctactgtagggagacaa	7	5	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16068234	T	T	16068234	1	4	209	0	1	0	0	0	0	0	0	0	10330	116	4	5		5	NCOR1	17	16068234	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	8838491	16068234	65126976	152	164408											
CCDC55	84081	broad.mit.edu	37	chr17	28511752	28511752	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtagaggaaaacccagatgCagacagtgacttcgatgcta	11	8	0	4			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28511752	T	T	28511752	3	4	209	1	0	0	0	0	1	0	0	0	2853	710	25	4	763	4	CCDC55	17	28511752	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	12443518	28511752	52683458	153	164409											
ZPBP2	124626	broad.mit.edu	37	chr17	38029469	38029469	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagtgcagtggtgcgaccAtagctcactgcagcctcaaa	12	11	2	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38029469	G	G	38029469	1	3	209	0	1	0	0	0	0	0	0	0	18349	232	8	5		5	ZPBP2	17	38029469	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	9517717	38029469	43165741	154	164410											
C17orf65	339201	broad.mit.edu	37	chr17	42254909	42254909	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaggattggccatgtgggTgaggcaagacttgggtctgc	17	7	1	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42254909	C	C	42254909	1	2	209	0	1	0	0	0	0	0	0	0	1889	1711	59	5		5	C17orf65	17	42254909	5'UTR	SNP	T	TCGA-73-4675-01A-01D-1265-08	4225440	42254909	38940301	155	164411											
ARHGAP27	201176	broad.mit.edu	37	chr17	43473891	43473891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcactgctgcacgaagCgtggcacccggctcctctcg	13	15	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43473891	A	A	43473891	3	1	209	1	0	0	0	0	1	0	0	0	878	768	27	3	554	3	ARHGAP27	17	43473891	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	1218982	43473891	37721319	156	164412											
UTP18	51096	broad.mit.edu	37	chr17	49340811	49340811	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagttattttgcagatttTaaaatcattctttttaccaa	3	5	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49340811	C	C	49340811	1	2	209	0	1	0	0	0	0	0	0	0	17225	1769	61	5		5	UTP18	17	49340811	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	5866920	49340811	31854399	157	164413											
BCAS3	54828	broad.mit.edu	37	chr17	59147602	59147602	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacattgatgtggccaaggTcaacaccctgatttggcctg	11	10	1	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59147602	G	G	59147602	1	3	209	0	1	0	0	0	0	0	0	0	1357	1682	58	5		5	BCAS3	17	59147602	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	9806791	59147602	22047608	158	164414											
GH2	2689	broad.mit.edu	37	chr17	61958402	61958402	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactcacagatttctgctgcGttttcaccctgttggaaggt	9	11	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61958402	A	A	61958402	3	1	209	1	0	0	0	0	1	0	0	0	6432	1145	40	4	724	4	GH2	17	61958402	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	2810800	61958402	19236808	159	164415											
CSH1	1442	broad.mit.edu	37	chr17	61972557	61972557	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgaggatctgcccagtcCggcggctgccgtcttccagc	13	15	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61972557	A	A	61972557	3	1	209	1	0	0	0	0	1	0	0	0	3974	652	23	1	178	1	CSH1	17	61972557	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	14155	61972557	19222653	160	164416											
LLGL2	3993	broad.mit.edu	37	chr17	73566508	73566508	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcaagaagtccttgcgtCagtcattccgccggatgcgt	10	14	3	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73566508	T	T	73566508	4	4	209	1	0	0	0	0	0	1	0	0	8908	827	29	4	2047	4	LLGL2	17	73566508	Nonsense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	11593951	73566508	7628702	161	164417											
RNF213	57674	broad.mit.edu	37	chr17	78349500	78349500	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgacagagcaagactccatCtcaaaaaaaaaagatgtgtt	8	7	1	4			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78349500	T	T	78349500	1	4	209	0	1	0	0	0	0	0	0	0	13588	928	32	4		4	RNF213	17	78349500	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	4782992	78349500	2845710	162	164418											
ESCO1	114799	broad.mit.edu	37	chr18	19153751	19153751	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgatttgtttccttctgatGaagtatttgtctttcaacac	6	8	3	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19153751	T	T	19153751	3	4	209	1	0	0	0	0	1	0	0	0	5290	1290	45	3	1504	3	ESCO1	18	19153751	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08		19153751	58923497	163	164419											
C18orf45	85019	broad.mit.edu	37	chr18	20951314	20951314	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggatccacttgccttggcCtcccaaagtgctgggattcc	11	13	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20951314	G	G	20951314	1	3	209	0	1	0	0	0	0	0	0	0	1921	696	24	4		4	C18orf45	18	20951314	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	1797563	20951314	57125934	164	164420											
SYT4	6860	broad.mit.edu	37	chr18	40854284	40854284	+	Frame_Shift_Del	DEL	C	-	-													tggatgattttctctgacagCagatccatgcaaagagagag							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40854284	-	-	40854284	7	5	209	1	0	1	0	1	0	0	0	0	15595	710	25	0	1179	0	SYT4	18	40854284	Frame_Shift_Del	DEL	C	TCGA-73-4675-01A-01D-1265-08	19902970	40854284	37222964	165	164421											
KDM4B	23030	broad.mit.edu	37	chr19	5077623	5077623	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcatgccagaggagggccGcatggctcagcagttagcct	14	11	1	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5077623	T	T	5077623	1	4	209	0	1	0	0	0	0	0	0	0	8199	1102	38	3		3	KDM4B	19	5077623	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08		5077623	54051360	166	164422											
ELAVL1	1994	broad.mit.edu	37	chr19	8032384	8032385	+	Intron	DNP	GC	AT	AT													cccgtggtttctattctgtgGctgtgccgtcgcctgccagc							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	8032385	AT	AT	8032384	1	1	209	0	1	0	0	0	0	0	0	0	5091	1218	42	4		4	ELAVL1	19	8032384	Intron	DNP	GC	TCGA-73-4675-01A-01D-1265-08	2954761	8032384	51096599	167	164423											
FBN3	84467	broad.mit.edu	37	chr19	8191468	8191468	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctcctggatcttcagcCagcaggtgcccttggtgctg	13	13	3	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8191468	A	A	8191468	3	1	209	1	0	0	0	0	1	0	0	0	5761	595	21	2	6171	2	FBN3	19	8191468	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	159084	8191468	50937515	168	164424											
MUC16	94025	broad.mit.edu	37	chr19	9073701	9073701	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtctcagaaccaggtattGatatagaagcaagagcgtcc	11	8	1	4			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9073701	T	T	9073701	4	4	209	1	0	0	0	0	0	1	0	0	10067	1294	45	3	30106	3	MUC16	19	9073701	Nonsense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08	882233	9073701	50055282	169	164425											
EPHX3	79852	broad.mit.edu	37	chr19	15338342	15338342	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctatgcctggcaggatgTgggcctccaagcggcccggc	15	15	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15338342	C	C	15338342	3	2	209	1	0	0	0	0	1	0	0	0	5223	1696	59	5	97	5	EPHX3	19	15338342	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	6264641	15338342	43790641	170	164426											
HKR1	284459	broad.mit.edu	37	chr19	37853120	37853120	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctctcagctgttttcaagTttatgggcaggaaatcctct	8	10	4	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37853120	G	G	37853120	3	3	209	1	0	0	0	0	1	0	0	0	7261	1722	60	5	437	5	HKR1	19	37853120	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	22514778	37853120	21275863	171	164427											
AXL	558	broad.mit.edu	37	chr19	41745026	41745026	+	Intron	DEL	G	-	-													agagtgaaggcttaacagctGgggggtaaggttctaccctg							TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41745026	-	-	41745026	6	5	209	0	1	1	0	1	0	0	0	0	1243	1363	47	0		0	AXL	19	41745026	Intron	DEL	G	TCGA-73-4675-01A-01D-1265-08	3891906	41745026	17383957	172	164428											
PSG1	5669	broad.mit.edu	37	chr19	43382252	43382252	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcaccgtctactacataTgatgtaatgtaatggtagag	8	6	2	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43382252	C	C	43382252	2	2	209	1	0	0	0	0	0	0	0	1	12759	1451	51	5		5	PSG1	19	43382252	Silent	SNP	T	TCGA-73-4675-01A-01D-1265-08	1637226	43382252	15746731	173	164429											
PSG6	5675	broad.mit.edu	37	chr19	43585544	43585544	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacacacacacacacacaCacacacaaaaggggcatgtg	6	15	0	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43585544	T	T	43585544	1	4	209	0	1	0	0	0	0	0	0	0	12765	493	17	4		4	PSG6	19	43585544	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	203292	43585544	15543439	174	164430											
ZNF155	7711	broad.mit.edu	37	chr19	44496102	44496102	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaggtaagaactaagcatCtgtgtgtccttgtacctgac	9	9	2	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44496102	T	T	44496102	1	4	209	0	1	0	0	0	0	0	0	0	17862	928	32	4		4	ZNF155	19	44496102	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	910558	44496102	14632881	175	164431											
ZC3H4	23211	broad.mit.edu	37	chr19	47570601	47570601	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggattccagagcacggtgCgggcgaagctgggcttgctc	17	11	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47570601	T	T	47570601	3	4	209	1	0	0	0	0	1	0	0	0	17696	768	27	4	991	4	ZC3H4	19	47570601	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	3074499	47570601	11558382	176	164432											
SHANK1	50944	broad.mit.edu	37	chr19	51165489	51165489	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggtcggtgagagggagcgCgaggcccctgacaaggctcc	18	12	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51165489	T	T	51165489	2	4	209	1	0	0	0	0	0	0	0	1	14377	755	27	4		4	SHANK1	19	51165489	Silent	SNP	C	TCGA-73-4675-01A-01D-1265-08	3594888	51165489	7963494	177	164433											
KLK15	55554	broad.mit.edu	37	chr19	51330321	51330321	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcggtggctgcgcgcttcGtagcgcgggtgtggaatgac	18	9	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51330321	A	A	51330321	2	1	209	1	0	0	0	0	0	0	0	1	8474	1140	40	4		4	KLK15	19	51330321	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	164832	51330321	7798662	178	164434											
ZNF614	80110	broad.mit.edu	37	chr19	52519939	52519939	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactatgagttcgctgatgAgcaattagatagcgcttcat	9	9	1	4			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52519939	C	C	52519939	2	2	209	1	0	0	0	0	0	0	0	1	18166	291	11	5		5	ZNF614	19	52519939	Silent	SNP	A	TCGA-73-4675-01A-01D-1265-08	1189618	52519939	6609044	179	164435											
PPP2R1A	5518	broad.mit.edu	37	chr19	52724220	52724220	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctgtctctctcaccctcAcccttctgcagtatatgcca	4	18	4	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52724220	C	C	52724220	1	2	209	0	1	0	0	0	0	0	0	0	12483	174	6	5		5	PPP2R1A	19	52724220	Intron	SNP	A	TCGA-73-4675-01A-01D-1265-08	204281	52724220	6404763	180	164436											
NLRP2	55655	broad.mit.edu	37	chr19	55493672	55493672	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaccccagggtgcttccCgggcccttctcatacacggt	10	16	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55493672	A	A	55493672	2	1	209	1	0	0	0	0	0	0	0	1	10572	639	23	1		1	NLRP2	19	55493672	Silent	SNP	C	TCGA-73-4675-01A-01D-1265-08	2769452	55493672	3635311	181	164437											
PEG3	5178	broad.mit.edu	37	chr19	57327010	57327010	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctttttagcacgagcctTctggtattcacggacatttg	8	9	3	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57327010	A	A	57327010	4	1	209	1	0	0	0	0	0	1	0	0	11814	1792	62	5	1970	5	PEG3	19	57327010	Nonsense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08	1833338	57327010	1801973	182	164438											
C20orf185	359710	broad.mit.edu	37	chr20	31651454	31651454	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacagtgtgctgggtgtgGtgaatgagctcctgggggct	19	6	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31651454	A	A	31651454	3	1	209	1	0	0	0	0	1	0	0	0	2119	1261	44	4	647	4	C20orf185	20	31651454	Missense_Mutation	SNP	G	TCGA-73-4675-01A-01D-1265-08		31651454	31374066	183	164439											
PTPRT	11122	broad.mit.edu	37	chr20	40738887	40738887	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttagtagagacgaggttTcaccacgttggccaggctgg	13	9	2	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40738887	A	A	40738887	1	1	209	0	1	0	0	0	0	0	0	0	12920	1798	62	5		5	PTPRT	20	40738887	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	9087433	40738887	22286633	184	164440											
C21orf91	54149	broad.mit.edu	37	chr21	19190566	19190566	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgtttctttgtctgttcCcagtttacaaacactgcaaa	7	9	2	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19190566	A	A	19190566	4	1	209	1	0	0	0	0	0	1	0	0	2156	632	22	2	839	2	C21orf91	21	19190566	Nonsense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08		19190566	28939329	185	164441											
KRTAP19-1	337882	broad.mit.edu	37	chr21	31852612	31852612	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagctgtagcccaggcctcCgtagtagctgccgtagtgac	12	13	0	1			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31852612	T	T	31852612	3	4	209	1	0	0	0	0	1	0	0	0	8599	661	23	4	249	4	KRTAP19-1	21	31852612	Missense_Mutation	SNP	C	TCGA-73-4675-01A-01D-1265-08	12662046	31852612	16277283	186	164442											
ITGB2	3689	broad.mit.edu	37	chr21	46313397	46313397	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattgctgcagaaggagtcGtaggtgactttcagggtgtc	14	8	1	2	rs61737080		TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46313397	A	A	46313397	2	1	209	1	0	0	0	0	0	0	0	1	7964	1140	40	4		4	ITGB2	21	46313397	Silent	SNP	G	TCGA-73-4675-01A-01D-1265-08	14460785	46313397	1816498	187	164443											
POFUT2	23275	broad.mit.edu	37	chr21	46687659	46687659	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagagaccctttgaacCgggatcctccagtaaggaca	12	10	0	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46687659	A	A	46687659	1	1	209	0	1	0	0	0	0	0	0	0	12279	667	23	1		1	POFUT2	21	46687659	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	374262	46687659	1442236	188	164444											
PCBP3	54039	broad.mit.edu	37	chr21	47319544	47319544	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatcgggaaggtaattaTtgattgaatctctgcctctc	8	9	3	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47319544	C	C	47319544	1	2	209	0	1	0	0	0	0	0	0	0	11596	1508	52	5		5	PCBP3	21	47319544	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08	631885	47319544	810351	189	164445											
DIP2A	23181	broad.mit.edu	37	chr21	47957011	47957011	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taattggtatgtggtatttgGaaatgctgtatctgttcctg	11	4	1	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47957011	T	T	47957011	1	4	209	0	1	0	0	0	0	0	0	0	4567	1189	41	3		3	DIP2A	21	47957011	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	637467	47957011	172884	190	164446											
HIRA	7290	broad.mit.edu	37	chr22	19422610	19422610	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactcttgaatggctctgggTgggaaagaacctaagacatc	11	8	2	3			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19422610	A	A	19422610	1	1	209	0	1	0	0	0	0	0	0	0	7187	1711	59	5		5	HIRA	22	19422610	Intron	SNP	T	TCGA-73-4675-01A-01D-1265-08		19422610	31881956	191	164447			3	130		2	2	12	N	T_C	6.822205e-05
HIRA	7290	broad.mit.edu	37	chr22	19422621	19422621	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgggtgggaaagaacCtaagacatctaataatccag	11	8	2	2			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19422621	A	A	19422621	1	1	209	0	1	0	0	0	0	0	0	0	7187	696	24	2		2	HIRA	22	19422621	Intron	SNP	C	TCGA-73-4675-01A-01D-1265-08	11	19422621	31881945	192	164448			3	130		2	2	12	N	T_C	6.822205e-05
NDP	4693	broad.mit.edu	37	chrX	43817761	43817761	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgactgatagaatccacaTagtggtgcctcatgcagcgt	12	9	1	3	rs104894870		TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43817761	C	C	43817761	3	2	209	1	0	0	0	0	1	0	0	0	10345	1406	49	5	278	5	NDP	23	43817761	Missense_Mutation	SNP	T	TCGA-73-4675-01A-01D-1265-08		43817761	111452799	193	164449											
SAGE1	55511	broad.mit.edu	37	chrX	134993299	134993299	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaggatatccctgtggGgttgtcattatgcacttact	10	9	2	0			TCGA-73-4675-01A-01D-1265-08	TCGA-73-4675-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134993299	C	C	134993299	1	2	209	0	1	0	0	0	0	0	0	0	13920	1247	43	4		4	SAGE1	23	134993299	Intron	SNP	G	TCGA-73-4675-01A-01D-1265-08	91175538	134993299	20277261	194	164450											
RERE	473	broad.mit.edu	37	chr1	8846667	8846667	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttgataaaggcgaagaaGctgcaacacctttcagacct	9	9	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8846667	A	A	8846667	1	1	210	0	1	0	0	0	0	0	0	0	13339	986	34	4		4	RERE	1	8846667	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08		8846667	240403954	1	164451											
UBIAD1	29914	broad.mit.edu	37	chr1	11333871	11333871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtggctgtcctggctgtgCacggggccggtaatttggtc	16	11	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11333871	A	A	11333871	3	1	210	1	0	0	0	0	1	0	0	0	17011	710	25	3	285	3	UBIAD1	1	11333871	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	2487204	11333871	237916750	2	164452											
PADI6	353238	broad.mit.edu	37	chr1	17720687	17720687	+	Intron	DEL	G	-	-													agggcccaggtggcctctgaGgggggaggggacgtggaagt					rs34075690		TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17720687	-	-	17720687	6	5	210	0	1	1	0	1	0	0	0	0	11475	1015	35	0		0	PADI6	1	17720687	Intron	DEL	G	TCGA-73-4676-01A-01D-1753-08	6386816	17720687	231529934	3	164453											
UBR4	23352	broad.mit.edu	37	chr1	19501491	19501491	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catcctctgaggcttctgggGacaggacacagtagaatctg	12	10	3	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19501491	A	A	19501491	3	1	210	1	0	0	0	0	1	0	0	0	17030	1174	41	4	13085	4	UBR4	1	19501491	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	1780804	19501491	229749130	4	164454											
RIMS3	9783	broad.mit.edu	37	chr1	41101649	41101649	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccggctgccctggcgtgTgacccggctccgcatctcca	11	19	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41101649	C	C	41101649	3	2	210	1	0	0	0	0	1	0	0	0	13480	1696	59	5	648	5	RIMS3	1	41101649	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	21600158	41101649	208148972	5	164455											
C8A	731	broad.mit.edu	37	chr1	57346991	57346991	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaagttcaggggtacatgcGcaggatgtgcaggtttgtca	14	6	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57346991	C	C	57346991	1	2	210	0	1	0	0	0	0	0	0	0	2441	1102	38	4		4	C8A	1	57346991	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	16245342	57346991	191903630	6	164456											
NFIA	4774	broad.mit.edu	37	chr1	61869785	61869785	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctgcagcaagtccgcAtgcaacaccatcgactcttc	6	15	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61869785	T	T	61869785	3	4	210	1	0	0	0	0	1	0	0	0	10465	217	8	5	1261	5	NFIA	1	61869785	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	4522794	61869785	187380836	7	164457											
DNAJC6	9829	broad.mit.edu	37	chr1	65851413	65851414	+	Nonsense_Mutation	DNP	TG	AT	AT													agatacctgggctatatgtgTgacctactggcagacaagcc							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	65851414	AT	AT	65851413	4	1	210	1	0	0	0	0	0	1	0	0	4693	1702	59	5	674	5	DNAJC6	1	65851413	Nonsense_Mutation	DNP	TG	TCGA-73-4676-01A-01D-1753-08	3981628	65851413	183399208	8	164458											
LRRC40	55631	broad.mit.edu	37	chr1	70655048	70655048	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacatgcttttataatagCcattccatttatctattgaa	5	7	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70655048	A	A	70655048	1	1	210	0	1	0	0	0	0	0	0	0	9085	754	26	3		3	LRRC40	1	70655048	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	4803635	70655048	178595573	9	164459											
C1orf173	127254	broad.mit.edu	37	chr1	75037335	75037335	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacctccctctcctctgcGgctgtttctgccgtttcacc	6	18	4	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75037335	A	A	75037335	2	1	210	1	0	0	0	0	0	0	0	1	2034	1103	39	4		4	C1orf173	1	75037335	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	4382287	75037335	174213286	10	164460											
LHX8	431707	broad.mit.edu	37	chr1	75622785	75622785	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtatcccaacatttaacagCtgtctcccaggcaatcagca	7	13	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75622785	A	A	75622785	1	1	210	0	1	0	0	0	0	0	0	0	8848	812	28	3		3	LHX8	1	75622785	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	585450	75622785	173627836	11	164461											
MCOLN3	55283	broad.mit.edu	37	chr1	85487754	85487754	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagttgtttatcagtaccTtgtcatggtaaggccccagc	9	9	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85487754	G	G	85487754	3	3	210	1	0	0	0	0	1	0	0	0	9490	1623	56	5	354	5	MCOLN3	1	85487754	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	9864969	85487754	163762867	12	164462											
CCBL2	56267	broad.mit.edu	37	chr1	89430472	89430472	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtgggacaaatgataaTtgattaatatgggtattacg	11	2	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89430472	C	C	89430472	1	2	210	0	1	0	0	0	0	0	0	0	2759	1508	52	5		5	CCBL2	1	89430472	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	3942718	89430472	159820149	13	164463											
SYPL2	284612	broad.mit.edu	37	chr1	110019462	110019462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagctccaagaccatgcacCtcatgggggacttctctgca	9	15	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110019462	A	A	110019462	3	1	210	1	0	0	0	0	1	0	0	0	15582	681	24	2	333	2	SYPL2	1	110019462	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	20588990	110019462	139231159	14	164464											
LOC200030	200030	broad.mit.edu	37	chr1	148342123	148342123	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggttccagaaagcaaaaTggaggttcccttaaagaggg	13	6	0	2	rs75621356		TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148342123	C	C	148342123	1	2	210	0	1	0	0	0	0	0	0	0	8950	1479	51	5		5	LOC200030	1	148342123	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	38322661	148342123	100908498	15	164465											
C1orf51	148523	broad.mit.edu	37	chr1	150259060	150259060	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctttagccatggtcctttAggcactggaaccggcattgg	11	11	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150259060	T	T	150259060	3	4	210	1	0	0	0	0	1	0	0	0	2065	417	15	5	870	5	C1orf51	1	150259060	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	1916937	150259060	98991561	16	164466											
LCE1B	353132	broad.mit.edu	37	chr1	152785211	152785211	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagagctctggctgctgcAgccagccctccgggggctcc	13	18	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152785211	G	G	152785211	3	3	210	1	0	0	0	0	1	0	0	0	8732	188	7	5	291	5	LCE1B	1	152785211	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	2526151	152785211	96465410	17	164467											
LELP1	149018	broad.mit.edu	37	chr1	153177035	153177035	+	Intron	DEL	C	-	-													tcatacaaggatgagggcggCcctaaatgagaagatgatct							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153177035	-	-	153177035	6	5	210	0	1	1	0	1	0	0	0	0	8790	754	26	0		0	LELP1	1	153177035	Intron	DEL	C	TCGA-73-4676-01A-01D-1753-08	391824	153177035	96073586	18	164468											
DENND4B	9909	broad.mit.edu	37	chr1	153907309	153907309	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgttgCtgctgctgctgctgttgccg	14	12	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153907309	T	T	153907309	2	4	210	1	0	0	0	0	0	0	0	1	4474	796	28	4		4	DENND4B	1	153907309	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	730274	153907309	95343312	19	164469											
TMEM79	84283	broad.mit.edu	37	chr1	156255080	156255080	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgattccccagagaagagCtcaccccaggccttggttcc	9	15	2	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156255080	G	G	156255080	3	3	210	1	0	0	0	0	1	0	0	0	16326	796	28	4	65	4	TMEM79	1	156255080	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	2347771	156255080	92995541	20	164470											
RHBG	57127	broad.mit.edu	37	chr1	156347350	156347350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgggccccggatctaGccctgtccttcaagtctgct	10	16	3	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156347350	A	A	156347350	1	1	210	0	1	0	0	0	0	0	0	0	13433	986	34	4		4	RHBG	1	156347350	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	92270	156347350	92903271	21	164471											
BCAN	63827	broad.mit.edu	37	chr1	156628465	156628466	+	Silent	DNP	CC	AA	AA													cagcgcaatctgccgctgatCcgatgccaagagaacggtcg							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	156628466	AA	AA	156628465	2	1	210	1	0	0	0	0	0	0	0	1	1350	845	30	3		3	BCAN	1	156628465	Silent	DNP	CC	TCGA-73-4676-01A-01D-1753-08	281115	156628465	92622156	22	164472											
ARHGEF11	9826	broad.mit.edu	37	chr1	156946817	156946817	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcagcatattcctgaggatCtgggtggcatgtttttgaac	11	8	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156946817	T	T	156946817	2	4	210	1	0	0	0	0	0	0	0	1	898	912	32	4		4	ARHGEF11	1	156946817	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	318352	156946817	92303804	23	164473											
CD1C	911	broad.mit.edu	37	chr1	158262630	158262630	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtcgagtgagacacagCagtctaggaggccaggacat	13	9	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262630	A	A	158262630	3	1	210	1	0	0	0	0	1	0	0	0	3006	709	25	3	869	3	CD1C	1	158262630	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	1315813	158262630	90987991	24	164474											
FCGR2A	2212	broad.mit.edu	37	chr1	161488756	161488756	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctctctgtggatccctacTgctggtttctgccttctcca	7	16	3	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161488756	G	G	161488756	1	3	210	0	1	0	0	0	0	0	0	0	5838	1595	55	5		5	FCGR2A	1	161488756	3'UTR	SNP	T	TCGA-73-4676-01A-01D-1753-08	3226126	161488756	87761865	25	164475											
TIPRL	261726	broad.mit.edu	37	chr1	168153122	168153122	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atataaaattatctcacccgActtttggttacgtatagatt	5	7	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168153122	G	G	168153122	1	3	210	0	1	0	0	0	0	0	0	0	16049	290	10	5		5	TIPRL	1	168153122	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	6664366	168153122	81097499	26	164476											
NME7	29922	broad.mit.edu	37	chr1	169337007	169337007	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaggaagacaccaccacCaccaccatcatacggttact	6	15	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169337007	A	A	169337007	1	1	210	0	1	0	0	0	0	0	0	0	10591	609	21	2		2	NME7	1	169337007	5'UTR	SNP	C	TCGA-73-4676-01A-01D-1753-08	1183885	169337007	79913614	27	164477											
PAPPA2	60676	broad.mit.edu	37	chr1	176738760	176738760	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaggaaattctgctcacAtgttcttctgggcactggga	11	8	4	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176738760	G	G	176738760	2	3	210	1	0	0	0	0	0	0	0	1	11527	204	8	5		5	PAPPA2	1	176738760	Silent	SNP	A	TCGA-73-4676-01A-01D-1753-08	7401753	176738760	72511861	28	164478											
HHAT	55733	broad.mit.edu	37	chr1	210686421	210686421	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatactatgaatttaaattAtaaatatagttgtctagtct	4	4	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210686421	G	G	210686421	1	3	210	0	1	0	0	0	0	0	0	0	7156	464	16	5		5	HHAT	1	210686421	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	33947661	210686421	38564200	29	164479											
SPATA17	128153	broad.mit.edu	37	chr1	217975238	217975238	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttattcctttttaaaagctAgaaatatacattaattagag	5	4	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	217975238	G	G	217975238	1	3	210	0	1	0	0	0	0	0	0	0	15118	435	15	5		5	SPATA17	1	217975238	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	7288817	217975238	31275383	30	164480											
CABC1	56997	broad.mit.edu	37	chr1	227171429	227171429	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcctccctgcagagcccCcttcctcgctgatgccctcc	9	20	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227171429	T	T	227171429	1	4	210	0	1	0	0	0	0	0	0	0	2553	638	22	4		4	CABC1	1	227171429	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	9196191	227171429	22079192	31	164481											
PCNXL2	80003	broad.mit.edu	37	chr1	233152650	233152650	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacattccatgcctcagcccCcacctccctgacctacctct	3	21	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233152650	T	T	233152650	1	4	210	0	1	0	0	0	0	0	0	0	11686	638	22	4		4	PCNXL2	1	233152650	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	5981221	233152650	16097971	32	164482											
RYR2	6262	broad.mit.edu	37	chr1	237666865	237666865	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgctgatacacagtggCtttacacttggaccacaacc	8	12	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237666865	A	A	237666865	1	1	210	0	1	0	0	0	0	0	0	0	13880	812	28	3		3	RYR2	1	237666865	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	4514215	237666865	11583756	33	164483											
RYR2	6262	broad.mit.edu	37	chr1	237787114	237787114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaagtgaatgtccatgtcCagaagaaattcgtgaccaac	8	9	0	4			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237787114	A	A	237787114	3	1	210	1	0	0	0	0	1	0	0	0	13880	594	21	2	6120	2	RYR2	1	237787114	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	120249	237787114	11463507	34	164484											
RYR2	6262	broad.mit.edu	37	chr1	237791169	237791169	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaggagtctgtcattgaaGaccccgagctggtgagggcc	14	11	3	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237791169	A	A	237791169	3	1	210	1	0	0	0	0	1	0	0	0	13880	942	33	4	6391	4	RYR2	1	237791169	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	4055	237791169	11459452	35	164485											
ZP4	57829	broad.mit.edu	37	chr1	238053780	238053780	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccaagctattagtacaggAggagacgttgcctcctggtt	11	11	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238053780	T	T	238053780	2	4	210	1	0	0	0	0	0	0	0	1	18347	291	11	5		5	ZP4	1	238053780	Silent	SNP	A	TCGA-73-4676-01A-01D-1753-08	262611	238053780	11196841	36	164486											
MAP1LC3C	440738	broad.mit.edu	37	chr1	242159717	242159717	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagggtggtgagggtaTggcctgcgagacagcccagg	20	8	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	242159717	G	G	242159717	1	3	210	0	1	0	0	0	0	0	0	0	9325	1479	51	5		5	MAP1LC3C	1	242159717	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	4105937	242159717	7090904	37	164487											
OR2T34	127068	broad.mit.edu	37	chr1	248737471	248737471	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcttatagagggagacGtcagagcaggagagcttcag	14	7	3	4			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248737471	A	A	248737471	2	1	210	1	0	0	0	0	0	0	0	1	11119	1136	40	4		4	OR2T34	1	248737471	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	6577754	248737471	513150	38	164488											
ROCK2	9475	broad.mit.edu	37	chr2	11355542	11355542	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcttttaagctgttaactaTgataaaaagcatttcagtgg	7	5	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11355542	C	C	11355542	1	2	210	0	1	0	0	0	0	0	0	0	13629	1479	51	5		5	ROCK2	2	11355542	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08		11355542	231843831	39	164489											
UBXN2A	165324	broad.mit.edu	37	chr2	24166725	24166725	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacccaagatggctgcaCtcttgctgagacatgttgga	11	10	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24166725	T	T	24166725	1	4	210	0	1	0	0	0	0	0	0	0	17040	580	20	4		4	UBXN2A	2	24166725	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	12811183	24166725	219032648	40	164490											
ITSN2	50618	broad.mit.edu	37	chr2	24432687	24432687	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagacgcgtgatactcacCgttttatacattttgaattg	7	10	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24432687	T	T	24432687	2	4	210	1	0	0	0	0	0	0	0	1	7997	666	23	4		4	ITSN2	2	24432687	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	265962	24432687	218766686	41	164491											
HADHB	3032	broad.mit.edu	37	chr2	26499867	26499867	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttccagatgactatgaagAttagtgctcaaagcatcatt	8	7	2	4			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26499867	T	T	26499867	1	4	210	0	1	0	0	0	0	0	0	0	7010	348	12	5		5	HADHB	2	26499867	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	2067180	26499867	216699506	42	164492											
OTOF	9381	broad.mit.edu	37	chr2	26689016	26689016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgcccctgccaggctgCctgagggtcctatgacagtg	13	13	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26689016	A	A	26689016	1	1	210	0	1	0	0	0	0	0	0	0	11397	754	26	3		3	OTOF	2	26689016	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	189149	26689016	216510357	43	164493											
GALNT14	79623	broad.mit.edu	37	chr2	31167616	31167616	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agatggcctggcaaagggctCcctttgtctgcttgatgctt	12	10	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31167616	G	G	31167616	1	3	210	0	1	0	0	0	0	0	0	0	6274	870	30	4		4	GALNT14	2	31167616	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	4478600	31167616	212031757	44	164494											
HEATR5B	54497	broad.mit.edu	37	chr2	37208593	37208593	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggccatcactaattagggGctagttgacaacataaatac	9	8	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37208593	A	A	37208593	1	1	210	0	1	0	0	0	0	0	0	0	7099	1218	42	4		4	HEATR5B	2	37208593	3'UTR	SNP	G	TCGA-73-4676-01A-01D-1753-08	6040977	37208593	205990780	45	164495											
EML4	27436	broad.mit.edu	37	chr2	42552612	42552612	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgttattttctagggacaTtccagctacatcacacacct	5	12	3	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42552612	C	C	42552612	2	2	210	1	0	0	0	0	0	0	0	1	5141	1490	52	5		5	EML4	2	42552612	Silent	SNP	T	TCGA-73-4676-01A-01D-1753-08	5344019	42552612	200646761	46	164496											
PRKCE	5581	broad.mit.edu	37	chr2	46411986	46411986	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccaggaggaattcaaagGtttctcctactttggtgaag	10	8	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46411986	T	T	46411986	3	4	210	1	0	0	0	0	1	0	0	0	12617	1261	44	3	2238	3	PRKCE	2	46411986	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	3859374	46411986	196787387	47	164497											
REG1B	5968	broad.mit.edu	37	chr2	79314689	79314689	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcaccttggctcagagacAggaacatcagggaggagatc	12	10	3	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79314689	G	G	79314689	3	3	210	1	0	0	0	0	1	0	0	0	13319	188	7	5	470	5	REG1B	2	79314689	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	32902703	79314689	163884684	48	164498											
TCF7L1	83439	broad.mit.edu	37	chr2	85533696	85533696	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caactatgtaagtgcacactCtgggcagaggacgctcagac	11	11	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85533696	A	A	85533696	1	1	210	0	1	0	0	0	0	0	0	0	15819	928	32	3		3	TCF7L1	2	85533696	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	6219007	85533696	157665677	49	164499											
MAL	4118	broad.mit.edu	37	chr2	95715324	95715324	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacaccccgtctgccccatAggacgcagcctaccactgca	8	18	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95715324	G	G	95715324	5	3	210	1	0	0	0	0	0	0	1	0	9291	434	15	5	270	5	MAL	2	95715324	Splice_Site	SNP	A	TCGA-73-4676-01A-01D-1753-08	10181628	95715324	147484049	50	164500											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105883921	105883921	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgcacaagaccaccattTgggtatctaacaaacacagg	9	10	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105883921	C	C	105883921	2	2	210	1	0	0	0	0	0	0	0	1	15947	1799	63	5		5	TGFBRAP1	2	105883921	Silent	SNP	T	TCGA-73-4676-01A-01D-1753-08	10168597	105883921	137315452	51	164501											
ABCB11	8647	broad.mit.edu	37	chr2	169783583	169783583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgggattttcagattagGgatgctcaacctgtacactc	9	8	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169783583	T	T	169783583	1	4	210	0	1	0	0	0	0	0	0	0	42	1247	43	2		2	ABCB11	2	169783583	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	63899662	169783583	73415790	52	164502											
CPS1	1373	broad.mit.edu	37	chr2	211459169	211459169	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttaactgggtatattgTgttttatctggtgaacttag	9	3	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	211459169	C	C	211459169	1	2	210	0	1	0	0	0	0	0	0	0	3855	1711	59	5		5	CPS1	2	211459169	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	41675586	211459169	31740204	53	164503											
ABCA12	26154	broad.mit.edu	37	chr2	215862422	215862422	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgattttcaacatacctcAtgaagccggaggtctttctc	8	10	4	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215862422	T	T	215862422	3	4	210	1	0	0	0	0	1	0	0	0	30	214	8	5	4620	5	ABCA12	2	215862422	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	4403253	215862422	27336951	54	164504											
TNS1	7145	broad.mit.edu	37	chr2	218677214	218677214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcagtgatactggaagcCagaagggaaacctccacctc	12	11	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218677214	A	A	218677214	1	1	210	0	1	0	0	0	0	0	0	0	16466	609	21	2		2	TNS1	2	218677214	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	2814792	218677214	24522159	55	164505											
SCG2	7857	broad.mit.edu	37	chr2	224462881	224462881	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccactgatccattcggctTctccccagttttgagcatct	6	14	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224462881	G	G	224462881	3	3	210	1	0	0	0	0	1	0	0	0	14003	1792	62	5	737	5	SCG2	2	224462881	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	5785667	224462881	18736492	56	164506											
USP40	55230	broad.mit.edu	37	chr2	234394527	234394527	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcctcagggagccggcagtCccaccctgggccgcgttcca	13	17	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234394527	T	T	234394527	2	4	210	1	0	0	0	0	0	0	0	1	17199	842	30	4		4	USP40	2	234394527	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	9931646	234394527	8804846	57	164507											
FBLN2	2199	broad.mit.edu	37	chr3	13679131	13679131	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgcgcatcacgcactaCcagctcaacttccagacggg	9	17	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13679131	A	A	13679131	4	1	210	1	0	0	0	0	0	1	0	0	5756	518	18	3	2164	3	FBLN2	3	13679131	Nonsense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08		13679131	184343299	58	164508											
C3orf20	84077	broad.mit.edu	37	chr3	14744488	14744488	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaaggggttacagggcCcatgcaagtctaaaatccag	10	9	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14744488	T	T	14744488	1	4	210	0	1	0	0	0	0	0	0	0	2235	638	22	4		4	C3orf20	3	14744488	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	1065357	14744488	183277942	59	164509											
PTH1R	5745	broad.mit.edu	37	chr3	46939861	46939861	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgtgtctccccccgcccCgcacaggaggtgtttgaccg	12	16	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46939861	A	A	46939861	1	1	210	0	1	0	0	0	0	0	0	0	12864	667	23	1		1	PTH1R	3	46939861	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	32195373	46939861	151082569	60	164510											
SETD2	29072	broad.mit.edu	37	chr3	47158225	47158225	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcattcgcttaatatctcGatgagatttattcttctttc	5	9	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47158225	A	A	47158225	4	1	210	1	0	0	0	0	0	1	0	0	14244	1066	37	4	3292	4	SETD2	3	47158225	Nonsense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	218364	47158225	150864205	61	164511											
FAM19A4	151647	broad.mit.edu	37	chr3	68929763	68929763	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgccatatttcatgcttccTctagttatttacacaccatc	3	14	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68929763	C	C	68929763	1	2	210	0	1	0	0	0	0	0	0	0	5581	1566	54	5		5	FAM19A4	3	68929763	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	21771538	68929763	129092667	62	164512											
CNTN3	5067	broad.mit.edu	37	chr3	74350996	74350996	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacattgagtagcagttccAtaaatgtcatcctctcctat	5	10	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74350996	G	G	74350996	1	3	210	0	1	0	0	0	0	0	0	0	3674	232	8	5		5	CNTN3	3	74350996	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	5421233	74350996	123671434	63	164513											
KALRN	8997	broad.mit.edu	37	chr3	124048678	124048678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcacccccagtgctccCccactgatccaccctgcatc	4	23	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124048678	A	A	124048678	1	1	210	0	1	0	0	0	0	0	0	0	8045	638	22	2		2	KALRN	3	124048678	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	49697682	124048678	73973752	64	164514											
KALRN	8997	broad.mit.edu	37	chr3	124398396	124398396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattgttgtcctatttcctaCaatgattgccttttttgatg	6	7	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124398396	A	A	124398396	1	1	210	0	1	0	0	0	0	0	0	0	8045	493	17	3		3	KALRN	3	124398396	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	349718	124398396	73624034	65	164515											
KIAA0226	9711	broad.mit.edu	37	chr3	197403694	197403694	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcaagaaccccaggtccaCccccctccctgtatccctaa	6	19	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197403694	A	A	197403694	1	1	210	0	1	0	0	0	0	0	0	0	8232	522	18	3		3	KIAA0226	3	197403694	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	73005298	197403694	618736	66	164516											
KLF3	51274	broad.mit.edu	37	chr4	38690078	38690078	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttaaggtcacatatatatcGaaatctaaactattttgtaa	4	5	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38690078	A	A	38690078	1	1	210	0	1	0	0	0	0	0	0	0	8418	1073	37	4		4	KLF3	4	38690078	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08		38690078	152464198	67	164517											
ARHGAP24	83478	broad.mit.edu	37	chr4	86491836	86491836	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgctcaagggggatcagCtctattatttcaaagatgaa	10	6	4	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86491836	T	T	86491836	3	4	210	1	0	0	0	0	1	0	0	0	875	797	28	4	144	4	ARHGAP24	4	86491836	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	47801758	86491836	104662440	68	164518											
HERC5	51191	broad.mit.edu	37	chr4	89393449	89393449	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttagacaatttattatagTtacacacttgagaaaaaagg	6	4	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89393449	G	G	89393449	1	3	210	0	1	0	0	0	0	0	0	0	7128	1740	60	5		5	HERC5	4	89393449	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	2901613	89393449	101760827	69	164519											
PPP3CA	5530	broad.mit.edu	37	chr4	101953470	101953470	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtactccgctggggagCatgccagttggggtcaagcc	15	10	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101953470	A	A	101953470	3	1	210	1	0	0	0	0	1	0	0	0	12498	710	25	3	284	3	PPP3CA	4	101953470	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	12560021	101953470	89200806	70	164520											
NFKB1	4790	broad.mit.edu	37	chr4	103527741	103527741	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacctgagccttctggaccGcttgggtaactctgttttgc	11	12	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103527741	T	T	103527741	3	4	210	1	0	0	0	0	1	0	0	0	10470	1087	38	3	1903	3	NFKB1	4	103527741	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	1574271	103527741	87626535	71	164521											
ANK2	287	broad.mit.edu	37	chr4	114209548	114209548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattattatttacagcttgGttacacacctttaattgtgg	6	6	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114209548	T	T	114209548	3	4	210	1	0	0	0	0	1	0	0	0	621	1261	44	3	2286	3	ANK2	4	114209548	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	10681807	114209548	76944728	72	164522											
NPY1R	4886	broad.mit.edu	37	chr4	164247323	164247323	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatgagaaccagagagaaAatggacacagtgattgaaac	11	6	0	5			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164247323	C	C	164247323	3	2	210	1	0	0	0	0	1	0	0	0	10703	10	1	5	778	5	NPY1R	4	164247323	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	50037775	164247323	26906953	73	164523											
TRIM60	166655	broad.mit.edu	37	chr4	165962548	165962548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctattctctatacttttaacGattgtttcacagaagccgtt	5	9	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165962548	T	T	165962548	3	4	210	1	0	0	0	0	1	0	0	0	16660	1058	37	3	1326	3	TRIM60	4	165962548	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	1715225	165962548	25191728	74	164524											
PLEKHG4B	153478	broad.mit.edu	37	chr5	144977	144977	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggggctggttgtcctggTggatgcacgcaggagtccag	17	10	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144977	C	C	144977	3	2	210	1	0	0	0	0	1	0	0	0	12167	1696	59	5	793	5	PLEKHG4B	5	144977	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08		144977	180770283	75	164525											
SLC6A18	348932	broad.mit.edu	37	chr5	1244642	1244642	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagggtgcaggttggaccCcagttagggtccgatcctcg	15	11	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1244642	A	A	1244642	1	1	210	0	1	0	0	0	0	0	0	0	14795	638	22	2		2	SLC6A18	5	1244642	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	1099665	1244642	179670618	76	164526											
DNAH5	1767	broad.mit.edu	37	chr5	13769343	13769343	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttgattttgttcacttAcccagttttgttgttttttt	6	5	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13769343	T	T	13769343	1	4	210	0	1	0	0	0	0	0	0	0	4644	406	14	5		5	DNAH5	5	13769343	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	12524701	13769343	167145917	77	164527											
TRIO	7204	broad.mit.edu	37	chr5	14419790	14419790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagctcactccggggcaGggtggcaggaacccacctgg	14	14	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14419790	T	T	14419790	1	4	210	0	1	0	0	0	0	0	0	0	16677	1015	35	2		2	TRIO	5	14419790	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	650447	14419790	166495470	78	164528											
SPEF2	79925	broad.mit.edu	37	chr5	35670182	35670182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgattccgtataagttgatGcatgattggaaggaactatt	10	5	0	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35670182	T	T	35670182	3	4	210	1	0	0	0	0	1	0	0	0	15153	1319	46	3	1415	3	SPEF2	5	35670182	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	21250392	35670182	145245078	79	164529											
LIX1	167410	broad.mit.edu	37	chr5	96432672	96432672	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agcagggcataactctaattCccaaatatatcaggaaacag	7	9	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96432672	A	A	96432672	1	1	210	0	1	0	0	0	0	0	0	0	8905	870	30	3		3	LIX1	5	96432672	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	60762490	96432672	84482588	80	164530											
FBXL17	64839	broad.mit.edu	37	chr5	107700656	107700656	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgatttcaattatattcTgacttcttgatgcaattttt	5	5	3	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107700656	C	C	107700656	3	2	210	1	0	0	0	0	1	0	0	0	5770	1580	55	5	976	5	FBXL17	5	107700656	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	11267984	107700656	73214604	81	164531											
SRP19	6728	broad.mit.edu	37	chr5	112228539	112228539	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaagaaatggggaatccgaGagaaaaaagagtagtcatag	12	3	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112228539	A	A	112228539	2	1	210	1	0	0	0	0	0	0	0	1	15272	957	33	4		4	SRP19	5	112228539	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	4527883	112228539	68686721	82	164532											
MYLK4	340156	broad.mit.edu	37	chr6	2749339	2749339	+	Intron	DEL	T	-	-													agataagatagaatgaatacTttttaggagactaaattaga							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2749339	-	-	2749339	6	5	210	0	1	1	0	1	0	0	0	0	10153	1624	56	0		0	MYLK4	6	2749339	Intron	DEL	T	TCGA-73-4676-01A-01D-1753-08		2749339	168365728	83	164533											
PGBD1	84547	broad.mit.edu	37	chr6	28253402	28253402	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagtctctttggagtgtcaGagcctccagctcctgcctgg	13	12	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28253402	T	T	28253402	3	4	210	1	0	0	0	0	1	0	0	0	11875	933	33	3	477	3	PGBD1	6	28253402	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	25504063	28253402	142861665	84	164534											
RDBP	7936	broad.mit.edu	37	chr6	31921393	31921393	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccttcccattcccatagCctccgcacacactctgacct	3	19	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31921393	T	T	31921393	1	4	210	0	1	0	0	0	0	0	0	0	13296	754	26	4		4	RDBP	6	31921393	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	3667991	31921393	139193674	85	164535											
COL11A2	1302	broad.mit.edu	37	chr6	33143526	33143526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggcccagaggagaaatGggcaacagtgaggctgagga	17	7	1	4			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33143526	T	T	33143526	1	4	210	0	1	0	0	0	0	0	0	0	3700	1363	47	2		2	COL11A2	6	33143526	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	1222133	33143526	137971541	86	164536											
UHRF1BP1	54887	broad.mit.edu	37	chr6	34802533	34802533	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaataacttggcaaacactCcgaattgaggcagatgctac	9	9	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34802533	T	T	34802533	2	4	210	1	0	0	0	0	0	0	0	1	17094	842	30	4		4	UHRF1BP1	6	34802533	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	1659007	34802533	136312534	87	164537											
CRIP3	401262	broad.mit.edu	37	chr6	43276570	43276570	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgcggcacacagtaggtaCgccgctgcggctcagttccg	13	15	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43276570	T	T	43276570	1	4	210	0	1	0	0	0	0	0	0	0	3908	551	19	4		4	CRIP3	6	43276570	5'Flank	SNP	C	TCGA-73-4676-01A-01D-1753-08	8474037	43276570	127838497	88	164538											
TCTE1	202500	broad.mit.edu	37	chr6	44250206	44250206	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aatgaggttttgtgacaagtCcagctcctcgaggactgggt	13	8	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44250206	G	G	44250206	3	3	210	1	0	0	0	0	1	0	0	0	15839	855	30	4	576	4	TCTE1	6	44250206	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	973636	44250206	126864861	89	164539											
KIAA1009	22832	broad.mit.edu	37	chr6	84862734	84862734	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctaattcagcattctgatgTttaagaacgtctatttcggc	7	8	4	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84862734	A	A	84862734	3	1	210	1	0	0	0	0	1	0	0	0	8273	1722	60	5	1072	5	KIAA1009	6	84862734	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	40612528	84862734	86252333	90	164540											
TAB2	23118	broad.mit.edu	37	chr6	149691270	149691270	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctgaatttgttaatacAaacctggtatttttttaaac	4	5	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149691270	T	T	149691270	1	4	210	0	1	0	0	0	0	0	0	0	15615	145	5	5		5	TAB2	6	149691270	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	64828536	149691270	21423797	91	164541											
PLG	5340	broad.mit.edu	37	chr6	161162365	161162365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgtcatcactgacaaaGtaatcccagcttgtctgcca	7	14	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161162365	T	T	161162365	3	4	210	1	0	0	0	0	1	0	0	0	12181	1029	36	3	2111	3	PLG	6	161162365	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	11471095	161162365	9952702	92	164542											
HERPUD2	64224	broad.mit.edu	37	chr7	35677952	35677952	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaaaaaatgaactcagatTaacttactactgcatataat	3	7	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35677952	A	A	35677952	1	1	210	0	1	0	0	0	0	0	0	0	7131	1769	61	5		5	HERPUD2	7	35677952	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08		35677952	123460711	93	164543											
ELMO1	9844	broad.mit.edu	37	chr7	36958825	36958825	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatgtcactatgtgctcCatgttatccagcatttggtt	8	8	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36958825	T	T	36958825	1	4	210	0	1	0	0	0	0	0	0	0	5107	609	21	4		4	ELMO1	7	36958825	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	1280873	36958825	122179838	94	164544											
CCT6A	908	broad.mit.edu	37	chr7	56120272	56120273	+	Intron	INS	-	A	A													gtgtccattttcaaggtaggINSagaacattcagaagtggcgt					rs112117593		TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56120273	A	A	56120272	6	5	210	0	1	1	1	0	0	0	0	0	2987	1189	41	0		0	CCT6A	7	56120272	Intron	INS	-	TCGA-73-4676-01A-01D-1753-08	19161447	56120272	103018391	95	164545											
CACNA2D1	781	broad.mit.edu	37	chr7	81601253	81601253	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgaaaaatatattttctAtttccaaaagcaatttagag	4	4	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81601253	G	G	81601253	1	3	210	0	1	0	0	0	0	0	0	0	2574	464	16	5		5	CACNA2D1	7	81601253	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	25480981	81601253	77537410	96	164546											
MYL10	93408	broad.mit.edu	37	chr7	101266291	101266291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacccagcgcggcaaagGtgtccctcaagtcctctttg	9	16	2	0	rs144539367	byFrequency	TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101266291	T	T	101266291	3	4	210	1	0	0	0	0	1	0	0	0	10138	1261	44	3	365	3	MYL10	7	101266291	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	19665038	101266291	57872372	97	164547											
FBXL13	222235	broad.mit.edu	37	chr7	102584584	102584584	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctctttttaaaatttgtAtttgtcctttccatatgcca	4	9	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102584584	G	G	102584584	1	3	210	0	1	0	0	0	0	0	0	0	5766	464	16	5		5	FBXL13	7	102584584	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	1318293	102584584	56554079	98	164548											
FEZF1	389549	broad.mit.edu	37	chr7	121942893	121942893	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagaattcacacacaaaCggtttgtagcccgcgtgtat	8	12	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121942893	T	T	121942893	2	4	210	1	0	0	0	0	0	0	0	1	5882	523	19	4		4	FEZF1	7	121942893	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	19358309	121942893	37195770	99	164549											
SLC13A1	6561	broad.mit.edu	37	chr7	122757720	122757720	+	Intron	DEL	A	-	-													tgagggtagacacgaaacatAaaaaaaaaaaaagtattaca							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122757720	-	-	122757720	6	5	210	0	1	1	0	1	0	0	0	0	14504	377	13	0		0	SLC13A1	7	122757720	Intron	DEL	A	TCGA-73-4676-01A-01D-1753-08	814827	122757720	36380943	100	164550											
LRGUK	136332	broad.mit.edu	37	chr7	133886351	133886351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actattctatcatttttgtgCcaggatttttttttttttca	4	6	3	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133886351	A	A	133886351	1	1	210	0	1	0	0	0	0	0	0	0	9030	754	26	3		3	LRGUK	7	133886351	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	11128631	133886351	25252312	101	164551											
KIAA1549	57670	broad.mit.edu	37	chr7	138554409	138554409	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcccgaggacaggtcgtcTaccaccgggaactcgtagtg	13	13	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138554409	C	C	138554409	2	2	210	1	0	0	0	0	0	0	0	1	8314	1509	53	5		5	KIAA1549	7	138554409	Silent	SNP	T	TCGA-73-4676-01A-01D-1753-08	4668058	138554409	20584254	102	164552											
TRPV6	55503	broad.mit.edu	37	chr7	142574350	142574350	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttcctggggaggacacAgggtatcatgtggccactgg	16	8	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142574350	T	T	142574350	1	4	210	0	1	0	0	0	0	0	0	0	16725	203	7	5		5	TRPV6	7	142574350	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	4019941	142574350	16564313	103	164553											
TRPV5	56302	broad.mit.edu	37	chr7	142605736	142605736	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggttcagtccaagattcaAgtgccccagggtgttttgac	11	9	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142605736	G	G	142605736	2	3	210	1	0	0	0	0	0	0	0	1	16724	69	3	5		5	TRPV5	7	142605736	Silent	SNP	A	TCGA-73-4676-01A-01D-1753-08	31386	142605736	16532927	104	164554											
KEL	3792	broad.mit.edu	37	chr7	142659420	142659420	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaggggcacttctgctgcTctttcgccttgtccccagac	10	14	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142659420	A	A	142659420	1	1	210	0	1	0	0	0	0	0	0	0	8212	1566	54	5		5	KEL	7	142659420	5'UTR	SNP	T	TCGA-73-4676-01A-01D-1753-08	53684	142659420	16479243	105	164555											
ZNF786	136051	broad.mit.edu	37	chr7	148771460	148771460	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtctcaaggtcggggcccTgatttcttaatactcacccc	8	13	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148771460	A	A	148771460	1	1	210	0	1	0	0	0	0	0	0	0	18287	1595	55	5		5	ZNF786	7	148771460	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	6112040	148771460	10367203	106	164556											
DPP6	1804	broad.mit.edu	37	chr7	154519722	154519722	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actccagtttcttgaggttcTgcaaaatttaaaagattttg	7	6	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154519722	A	A	154519722	1	1	210	0	1	0	0	0	0	0	0	0	4770	1595	55	5		5	DPP6	7	154519722	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	5748262	154519722	4618941	107	164557											
PTK2B	2185	broad.mit.edu	37	chr8	27255117	27255117	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaggatgtctggggtgtccGagcccctgagtcgagtaaag	16	8	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27255117	A	A	27255117	3	1	210	1	0	0	0	0	1	0	0	0	12869	1059	37	4	18	4	PTK2B	8	27255117	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08		27255117	119108905	108	164558											
TEX15	56154	broad.mit.edu	37	chr8	30701411	30701412	+	Frame_Shift_Ins	INS	-	T	T													tggttcaccttctaagtgccINStttttttgttttcaatgaat							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30701412	T	T	30701411	7	5	210	1	0	1	1	0	0	0	0	0	15901	681	24	0	3262	0	TEX15	8	30701411	Frame_Shift_Ins	INS	-	TCGA-73-4676-01A-01D-1753-08	3446294	30701411	115662611	109	164559											
PURG	29942	broad.mit.edu	37	chr8	30890170	30890170	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgattaggggtggctgaggcCgcgtagtgggggtagtggga	22	4	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30890170	T	T	30890170	2	4	210	1	0	0	0	0	0	0	0	1	12937	639	23	4		4	PURG	8	30890170	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	188759	30890170	115473852	110	164560											
PLEKHA2	59339	broad.mit.edu	37	chr8	38803582	38803582	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttagctttgtggagacttGttgtattgcttgtattctga	10	6	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38803582	C	C	38803582	1	2	210	0	1	0	0	0	0	0	0	0	12151	1392	48	4		4	PLEKHA2	8	38803582	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	7913412	38803582	107560440	111	164561											
ADAM9	8754	broad.mit.edu	37	chr8	38913015	38913015	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttagaatgctttatagatGtaaatgctgtggtttcacat	9	4	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38913015	T	T	38913015	1	4	210	0	1	0	0	0	0	0	0	0	253	1392	48	3		3	ADAM9	8	38913015	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	109433	38913015	107451007	112	164562											
UBE2V2	7336	broad.mit.edu	37	chr8	48920945	48920945	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgacgcgtgcagggcggCgcgctcccggaagtgacgcg	18	13	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48920945	T	T	48920945	1	4	210	0	1	0	0	0	0	0	0	0	17002	783	27	4		4	UBE2V2	8	48920945	5'Flank	SNP	C	TCGA-73-4676-01A-01D-1753-08	10007930	48920945	97443077	113	164563											
RBM12B	389677	broad.mit.edu	37	chr8	94747222	94747222	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgcctcagatataagtcTtaataacacctctgtcccta	5	11	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94747222	A	A	94747222	4	1	210	1	0	0	0	0	0	1	0	0	13222	1617	56	5	1592	5	RBM12B	8	94747222	Nonsense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	45826277	94747222	51616800	114	164564											
ESRP1	54845	broad.mit.edu	37	chr8	95680478	95680478	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagcagctgaagttcagcaGgttggttttaaaaacaagta	10	6	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95680478	C	C	95680478	3	2	210	1	0	0	0	0	1	0	0	0	5300	1014	35	4	1271	4	ESRP1	8	95680478	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	933256	95680478	50683544	115	164565											
INTS8	55656	broad.mit.edu	37	chr8	95878459	95878459	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctaattactattgctggTttttgtagaatatgactaaa	7	5	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95878459	G	G	95878459	1	3	210	0	1	0	0	0	0	0	0	0	7854	1740	60	5		5	INTS8	8	95878459	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	197981	95878459	50485563	116	164566											
CSMD3	114788	broad.mit.edu	37	chr8	113347698	113347699	+	Missense_Mutation	DNP	CC	AT	AT													gaggtgaattttggtctggtCcatccctatgagacaaggat							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	113347699	AT	AT	113347698	3	1	210	1	0	0	0	0	1	0	0	0	3980	855	30	3	4206	3	CSMD3	8	113347698	Missense_Mutation	DNP	CC	TCGA-73-4676-01A-01D-1753-08	17469239	113347698	33016324	117	164567											
RAD21	5885	broad.mit.edu	37	chr8	117869548	117869549	+	Frame_Shift_Del	DEL	TA	-	-													ttctccaaaattatcatcctTatattgatcttcatattcta					rs143910582	by1000genomes	TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117869549	-	-	117869548	7	5	210	1	0	1	0	1	0	0	0	0	13089	1763	61	0	1285	0	RAD21	8	117869548	Frame_Shift_Del	DEL	TA	TCGA-73-4676-01A-01D-1753-08	4521850	117869548	28494474	118	164568											
ZHX2	22882	broad.mit.edu	37	chr8	123964400	123964400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtggaagggaccgcccGcctggtgacagacacagctg	14	14	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123964400	T	T	123964400	3	4	210	1	0	0	0	0	1	0	0	0	17802	1087	38	3	652	3	ZHX2	8	123964400	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	6094852	123964400	22399622	119	164569											
GSDMC	56169	broad.mit.edu	37	chr8	130764122	130764122	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcacctactgggaggatgTgaacttgttcgtattctaaa	9	8	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130764122	C	C	130764122	3	2	210	1	0	0	0	0	1	0	0	0	6884	1696	59	5	648	5	GSDMC	8	130764122	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	6799722	130764122	15599900	120	164570											
LRRC6	23639	broad.mit.edu	37	chr8	133637715	133637715	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaactaggaaaaacaaaTagagcacttaaaaacaataa	7	5	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133637715	C	C	133637715	1	2	210	0	1	0	0	0	0	0	0	0	9103	1421	49	5		5	LRRC6	8	133637715	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	2873593	133637715	12726307	121	164571											
SMARCA2	6595	broad.mit.edu	37	chr9	2056747	2056747	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaactccaaagcatacaaaCggagcaagcgccagactctg	8	13	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2056747	T	T	2056747	3	4	210	1	0	0	0	0	1	0	0	0	14883	527	19	4	1271	4	SMARCA2	9	2056747	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08		2056747	139156684	122	164572											
KIAA0020	9933	broad.mit.edu	37	chr9	2829737	2829737	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaggaagagcatatcgaaaAgtaaaaatactagaaaaaga	8	3	0	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2829737	T	T	2829737	1	4	210	0	1	0	0	0	0	0	0	0	8222	87	3	5		5	KIAA0020	9	2829737	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	772990	2829737	138383694	123	164573											
FREM1	158326	broad.mit.edu	37	chr9	14848694	14848694	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatacacggggggcatttgtAtctgctgttctgatggagat	14	6	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14848694	G	G	14848694	2	3	210	1	0	0	0	0	0	0	0	1	6104	446	16	5		5	FREM1	9	14848694	Silent	SNP	A	TCGA-73-4676-01A-01D-1753-08	12018957	14848694	126364737	124	164574											
CNTLN	54875	broad.mit.edu	37	chr9	17415873	17415873	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcacatacagcagttcctActagaggtaagaatgtatat	8	7	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17415873	T	T	17415873	3	4	210	1	0	0	0	0	1	0	0	0	3671	391	14	5	2980	5	CNTLN	9	17415873	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	2567179	17415873	123797558	125	164575											
GABBR2	9568	broad.mit.edu	37	chr9	101068494	101068494	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacattgggctggtcccggGtcaggaaggagacagcggcc	17	11	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101068494	A	A	101068494	3	1	210	1	0	0	0	0	1	0	0	0	6216	1261	44	4	707	4	GABBR2	9	101068494	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	83652621	101068494	40144937	126	164576											
TMEFF1	8577	broad.mit.edu	37	chr9	103207491	103207491	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaagcctggaattgtcaatCatcctttctgggacttggta	10	8	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103207491	T	T	103207491	1	4	210	0	1	0	0	0	0	0	0	0	16136	841	29	4		4	TMEFF1	9	103207491	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	2138997	103207491	38005940	127	164577											
COL27A1	85301	broad.mit.edu	37	chr9	116994044	116994044	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcgtgtttaagccagggCtcctgacttctgtggcctag	12	10	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116994044	T	T	116994044	1	4	210	0	1	0	0	0	0	0	0	0	3717	812	28	4		4	COL27A1	9	116994044	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	13786553	116994044	24219387	128	164578											
ASTN2	23245	broad.mit.edu	37	chr9	119976542	119976542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtggcttatcccagaaaAcactgcctgtagtccccaac	7	13	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119976542	G	G	119976542	1	3	210	0	1	0	0	0	0	0	0	0	1069	58	2	5		5	ASTN2	9	119976542	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	2982498	119976542	21236889	129	164579											
CUL2	8453	broad.mit.edu	37	chr10	35320243	35320243	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attacctttaatttgttgatCatggcttcttcagagtccat	6	8	3	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35320243	G	G	35320243	3	3	210	1	0	0	0	0	1	0	0	0	4088	826	29	4	898	4	CUL2	10	35320243	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08		35320243	100214504	130	164580											
CCAR1	55749	broad.mit.edu	37	chr10	70525871	70525871	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaataagatccatataaGgtccacacattatgactagt	6	7	0	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70525871	A	A	70525871	1	1	210	0	1	0	0	0	0	0	0	0	2756	1015	35	4		4	CCAR1	10	70525871	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	35205628	70525871	65008876	131	164581											
STOX1	219736	broad.mit.edu	37	chr10	70645813	70645813	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacgtcaaatgctgcctgGccacagtcagtattccttca	7	13	3	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70645813	A	A	70645813	3	1	210	1	0	0	0	0	1	0	0	0	15437	1203	42	4	2271	4	STOX1	10	70645813	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	119942	70645813	64888934	132	164582											
FGFR2	2263	broad.mit.edu	37	chr10	123324018	123324020	+	In_Frame_Del	DEL	TTG	-	-													agccgggcagttacttactcTtgttgttactgttctcactg							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123324020	-	-	123324018	7	5	210	1	0	1	0	1	0	0	0	0	5923	1609	56	0	2329	0	FGFR2	10	123324018	In_Frame_Del	DEL	TTG	TCGA-73-4676-01A-01D-1753-08	52678205	123324018	12210729	133	164583											
HMX3	340784	broad.mit.edu	37	chr10	124896850	124896850	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaagaagccggcgtgccGcaagaagaagacgcgcacag	15	10	0	5			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124896850	A	A	124896850	3	1	210	1	0	0	0	0	1	0	0	0	7315	1087	38	4	683	4	HMX3	10	124896850	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	1572832	124896850	10637897	134	164584											
DENND5A	23258	broad.mit.edu	37	chr11	9215164	9215164	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaatagggacatagacatgCtgccactggaaaggaaacat	11	7	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9215164	G	G	9215164	3	3	210	1	0	0	0	0	1	0	0	0	4476	796	28	4	2925	4	DENND5A	11	9215164	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08		9215164	125791352	135	164585											
NELL1	4745	broad.mit.edu	37	chr11	20959499	20959499	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgagtggggcatattggcCtggatagggccccgaggggt	18	8	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20959499	T	T	20959499	1	4	210	0	1	0	0	0	0	0	0	0	10428	696	24	4		4	NELL1	11	20959499	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	11744335	20959499	114047017	136	164586											
OR9Q1	219956	broad.mit.edu	37	chr11	57947393	57947393	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcatcagtgccttggtgcgGacagtctcagccttcactct	9	14	5	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57947393	T	T	57947393	2	4	210	1	0	0	0	0	0	0	0	1	11349	1161	41	3		3	OR9Q1	11	57947393	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	36987894	57947393	77059123	137	164587											
OR5B2	390190	broad.mit.edu	37	chr11	58190389	58190389	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatagcggtcataggccaTtgaggccaacaagtaatttt	10	8	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58190389	A	A	58190389	3	1	210	1	0	0	0	0	1	0	0	0	11244	1493	52	5	587	5	OR5B2	11	58190389	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	242996	58190389	76816127	138	164588											
FIBP	9158	broad.mit.edu	37	chr11	65652447	65652447	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagaagacgcccagctttcCccggagagcagtgcacacca	11	14	0	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65652447	A	A	65652447	4	1	210	1	0	0	0	0	0	1	0	0	5943	632	22	2	311	2	FIBP	11	65652447	Nonsense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	7462058	65652447	69354069	139	164589											
B3GNT1	11041	broad.mit.edu	37	chr11	66113531	66113531	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagggctcagcagcgtcGgggagagttggggtacttgg	21	6	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66113531	T	T	66113531	2	4	210	1	0	0	0	0	0	0	0	1	1261	1124	39	1		1	B3GNT1	11	66113531	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	461084	66113531	68892985	140	164590											
C11orf24	53838	broad.mit.edu	37	chr11	68031132	68031132	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggccaccgtgggcccatCcagcagtcacacagctttct	10	15	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68031132	T	T	68031132	1	4	210	0	1	0	0	0	0	0	0	0	1647	870	30	4		4	C11orf24	11	68031132	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	1917601	68031132	66975384	141	164591											
DHCR7	1717	broad.mit.edu	37	chr11	71146414	71146414	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagggcttctccctagggCgtgcccttagaagattccag	11	13	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71146414	T	T	71146414	1	4	210	0	1	0	0	0	0	0	0	0	4517	783	27	4		4	DHCR7	11	71146414	3'UTR	SNP	C	TCGA-73-4676-01A-01D-1753-08	3115282	71146414	63860102	142	164592											
PIWIL4	143689	broad.mit.edu	37	chr11	94341929	94341929	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcactaaagaatgtaacagCaaggaatattttgtattatt	6	4	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94341929	T	T	94341929	1	4	210	0	1	0	0	0	0	0	0	0	12055	725	25	4		4	PIWIL4	11	94341929	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	23195515	94341929	40664587	143	164593											
DRD2	1813	broad.mit.edu	37	chr11	113288792	113288792	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcaggatgctcgccgtgcAcatcatgacgtccagagtga	12	11	2	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113288792	G	G	113288792	3	3	210	1	0	0	0	0	1	0	0	0	4797	159	6	5	1003	5	DRD2	11	113288792	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	18946863	113288792	21717724	144	164594											
HTR3B	9177	broad.mit.edu	37	chr11	113813798	113813798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggggagcttctacctgcCacccaactgccgagccagga	11	16	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113813798	A	A	113813798	3	1	210	1	0	0	0	0	1	0	0	0	7515	594	21	2	817	2	HTR3B	11	113813798	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	525006	113813798	21192718	145	164595											
BUD13	84811	broad.mit.edu	37	chr11	116633839	116633839	+	Frame_Shift_Del	DEL	G	-	-													aggatccggggtgtcatgacGggccctcctaggagatggat							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116633839	-	-	116633839	7	5	210	1	0	1	0	1	0	0	0	0	1583	1116	39	0	1421	0	BUD13	11	116633839	Frame_Shift_Del	DEL	G	TCGA-73-4676-01A-01D-1753-08	2820041	116633839	18372677	146	164596											
ROBO4	54538	broad.mit.edu	37	chr11	124764001	124764001	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattgagggcctggcaggcAagggggaagagctggaagtg	20	6	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124764001	T	T	124764001	1	4	210	0	1	0	0	0	0	0	0	0	13627	145	5	5		5	ROBO4	11	124764001	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	8130162	124764001	10242515	147	164597											
NTM	50863	broad.mit.edu	37	chr11	132082072	132082072	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtttgttgcattgcatcatGaggataaatgggggaatttt	12	3	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132082072	T	T	132082072	1	4	210	0	1	0	0	0	0	0	0	0	10794	1305	45	3		3	NTM	11	132082072	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	7318071	132082072	2924444	148	164598											
GLB1L2	89944	broad.mit.edu	37	chr11	134241564	134241564	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccatccccagagcgtagGgaagaactggggtccacaag	12	13	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134241564	T	T	134241564	1	4	210	0	1	0	0	0	0	0	0	0	6493	1247	43	2		2	GLB1L2	11	134241564	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	2159492	134241564	764952	149	164599											
C12orf61	283416	broad.mit.edu	37	chr12	62996808	62996808	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggggaacgggtggcctgGggacttcccggctatgcctt	17	11	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62996808	C	C	62996808	3	2	210	1	0	0	0	0	1	0	0	0	1717	1232	43	4	88	4	C12orf61	12	62996808	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08		62996808	70855087	150	164600											
KCNMB4	27345	broad.mit.edu	37	chr12	70794043	70794043	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaatttggaaagtgtcAtgaattggcaacagtactgg	12	4	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70794043	G	G	70794043	3	3	210	1	0	0	0	0	1	0	0	0	8147	217	8	5	397	5	KCNMB4	12	70794043	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	7797235	70794043	63057852	151	164601											
C12orf48	55010	broad.mit.edu	37	chr12	102558194	102558194	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaactgcaataaagaaattAactgaatattttattgcaca	5	5	0	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102558194	T	T	102558194	1	4	210	0	1	0	0	0	0	0	0	0	1705	377	13	5		5	C12orf48	12	102558194	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	31764151	102558194	31293701	152	164602											
MPHOSPH9	10198	broad.mit.edu	37	chr12	123687368	123687368	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaactggtcctactttcGttttggaatgtctgattttt	10	6	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123687368	A	A	123687368	2	1	210	1	0	0	0	0	0	0	0	1	9822	1136	40	4		4	MPHOSPH9	12	123687368	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	21129174	123687368	10164527	153	164603											
NALCN	259232	broad.mit.edu	37	chr13	101844427	101844427	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagaggaaaagaacaaaggTattacacactagctttaggc	9	6	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101844427	A	A	101844427	1	1	210	0	1	0	0	0	0	0	0	0	10242	1653	57	5		5	NALCN	13	101844427	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08		101844427	13325451	154	164604											
POTEG	404785	broad.mit.edu	37	chr14	19553772	19553772	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcaagagcaaagtgggccCttggggagactacgacgaca	15	10	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19553772	T	T	19553772	3	4	210	1	0	0	0	0	1	0	0	0	12362	681	24	4	358	4	POTEG	14	19553772	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08		19553772	87795768	155	164605											
OR6S1	341799	broad.mit.edu	37	chr14	21109020	21109020	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaatgtcgttattactgtCactgcccagttagtgtccac	7	11	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21109020	A	A	21109020	2	1	210	1	0	0	0	0	0	0	0	1	11303	813	29	3		3	OR6S1	14	21109020	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	1555248	21109020	86240520	156	164606											
G2E3	55632	broad.mit.edu	37	chr14	31070941	31070941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgaaactagaataataaCaaaatgtaagttctgctttt	7	4	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31070941	A	A	31070941	1	1	210	0	1	0	0	0	0	0	0	0	6200	493	17	3		3	G2E3	14	31070941	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	9961921	31070941	76278599	157	164607											
RALGAPA1	253959	broad.mit.edu	37	chr14	36159051	36159051	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaactgcacctttggctcGttcaacagtgaatggttcca	10	10	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36159051	A	A	36159051	4	1	210	1	0	0	0	0	0	1	0	0	13121	1153	40	4	3934	4	RALGAPA1	14	36159051	Nonsense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	5088110	36159051	71190489	158	164608											
MDGA2	161357	broad.mit.edu	37	chr14	47600918	47600918	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacagagataattccataccTgttttattggacagtctaaa	6	7	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47600918	A	A	47600918	2	1	210	1	0	0	0	0	0	0	0	1	9500	1594	55	5		5	MDGA2	14	47600918	Silent	SNP	T	TCGA-73-4676-01A-01D-1753-08	11441867	47600918	59748622	159	164609											
WDHD1	11169	broad.mit.edu	37	chr14	55451631	55451631	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaaggttatccaactataaCgcagtctaaattattttctg	5	8	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55451631	G	G	55451631	1	3	210	0	1	0	0	0	0	0	0	0	17398	551	19	4		4	WDHD1	14	55451631	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	7850713	55451631	51897909	160	164610											
DACT1	51339	broad.mit.edu	37	chr14	59113753	59113753	+	Frame_Shift_Del	DEL	C	-	-													gccccagaccttcacaaccaCcccgcaaaaacctttgtcaa							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59113753	-	-	59113753	7	5	210	1	0	1	0	1	0	0	0	0	4255	506	18	0	2426	0	DACT1	14	59113753	Frame_Shift_Del	DEL	C	TCGA-73-4676-01A-01D-1753-08	3662122	59113753	48235787	161	164611											
SYNE2	23224	broad.mit.edu	37	chr14	64449507	64449507	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaagttggtttcaaaaactCaacttgtaagttcttttgat	7	5	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64449507	T	T	64449507	4	4	210	1	0	0	0	0	0	1	0	0	15565	827	29	4	2058	4	SYNE2	14	64449507	Nonsense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	5335754	64449507	42900033	162	164612											
TMEM63C	57156	broad.mit.edu	37	chr14	77715824	77715824	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtaccaagccagcctggaGaccccacctccacctgcccc	8	20	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77715824	T	T	77715824	1	4	210	0	1	0	0	0	0	0	0	0	16315	957	33	3		3	TMEM63C	14	77715824	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	13266317	77715824	29633716	163	164613											
DICER1	23405	broad.mit.edu	37	chr14	95578531	95578531	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attttgtgcagtttctcacaGcaaatgagagctacaactct	7	9	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95578531	A	A	95578531	2	1	210	1	0	0	0	0	0	0	0	1	4561	963	34	4		4	DICER1	14	95578531	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	17862707	95578531	11771009	164	164614											
CYP46A1	10858	broad.mit.edu	37	chr14	100188436	100188436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggggtcctggggtgggCtgggctgcttgccccaatgg	19	11	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100188436	A	A	100188436	1	1	210	0	1	0	0	0	0	0	0	0	4215	812	28	3		3	CYP46A1	14	100188436	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	4609905	100188436	7161104	165	164615											
WARS	7453	broad.mit.edu	37	chr14	100827083	100827083	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgaagatgaaaagtgagtGatccatgcacaatcttaatg	9	5	1	5			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100827083	T	T	100827083	1	4	210	0	1	0	0	0	0	0	0	0	17376	1305	45	3		3	WARS	14	100827083	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	638647	100827083	6522457	166	164616											
AHNAK2	113146	broad.mit.edu	37	chr14	105409159	105409159	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgccctttgaggccgGctcccttgggcagggggccc	18	13	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105409159	A	A	105409159	3	1	210	1	0	0	0	0	1	0	0	0	415	1203	42	4	4762	4	AHNAK2	14	105409159	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	4582076	105409159	1940381	167	164617											
C15orf29	79768	broad.mit.edu	37	chr15	34434617	34434617	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattagacagtacagtaaaTacaaacataaacaatccatt	3	8	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34434617	C	C	34434617	1	2	210	0	1	0	0	0	0	0	0	0	1802	1421	49	5		5	C15orf29	15	34434617	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08		34434617	68096775	168	164618											
TTBK2	146057	broad.mit.edu	37	chr15	43069415	43069415	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagaccatttgcctggccaTggctgttctcctcttcagta	9	12	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43069415	C	C	43069415	3	2	210	1	0	0	0	0	1	0	0	0	16803	1464	51	5	2527	5	TTBK2	15	43069415	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	8634798	43069415	59461977	169	164619											
MYO1E	4643	broad.mit.edu	37	chr15	59564494	59564494	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatgtccaaagcagccaAtaaaggatacaaaaatgtag	8	6	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59564494	G	G	59564494	1	3	210	0	1	0	0	0	0	0	0	0	10166	116	4	5		5	MYO1E	15	59564494	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	16495079	59564494	42966898	170	164620											
TMC3	342125	broad.mit.edu	37	chr15	81665102	81665102	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgatcagggcattaaggaGgaaatctgattagaagaatt	11	3	2	4			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81665102	A	A	81665102	1	1	210	0	1	0	0	0	0	0	0	0	16109	1015	35	4		4	TMC3	15	81665102	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	22100608	81665102	20866290	171	164621											
ACAN	176	broad.mit.edu	37	chr15	89417108	89417108	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctgtggtggagcatgccAggaccttcgggcagaagaag	15	11	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89417108	G	G	89417108	3	3	210	1	0	0	0	0	1	0	0	0	117	179	7	5	7431	5	ACAN	15	89417108	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	7752006	89417108	13114284	172	164622											
PHKB	5257	broad.mit.edu	37	chr16	47599498	47599498	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttcattttctaaagacttCtcactctccctcgtgcattt	4	12	4	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47599498	T	T	47599498	1	4	210	0	1	0	0	0	0	0	0	0	11940	928	32	4		4	PHKB	16	47599498	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08		47599498	42755255	173	164623											
CHD9	80205	broad.mit.edu	37	chr16	53358590	53358590	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcccagtccaatacttttgAtgtacaaaacaaaaacagtg	6	9	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53358590	T	T	53358590	3	4	210	1	0	0	0	0	1	0	0	0	3363	333	12	5	8579	5	CHD9	16	53358590	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	5759092	53358590	36996163	174	164624											
CES7	221223	broad.mit.edu	37	chr16	55897368	55897368	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccatgggagacagtatctgGagagagaacacagaagaccc	13	9	1	5			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55897368	C	C	55897368	1	2	210	0	1	0	0	0	0	0	0	0	3302	1189	41	4		4	CES7	16	55897368	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	2538778	55897368	34457385	175	164625											
CDH3	1001	broad.mit.edu	37	chr16	68720456	68720456	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctaaaggaaagggtggagGgattcaaccagttagcgtga	14	5	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68720456	A	A	68720456	1	1	210	0	1	0	0	0	0	0	0	0	3141	1247	43	4		4	CDH3	16	68720456	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	12823088	68720456	21634297	176	164626											
HYDIN	54768	broad.mit.edu	37	chr16	70923336	70923336	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaaaggtcataacatcttAgcttaaaatgaaagtgacat	6	5	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70923336	T	T	70923336	1	4	210	0	1	0	0	0	0	0	0	0	7537	435	15	5		5	HYDIN	16	70923336	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	2202880	70923336	19431417	177	164627											
NUDT7	283927	broad.mit.edu	37	chr16	77775669	77775669	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatctttgagtacacaaaccCtgaagacggtgtcacttacc	7	11	2	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77775669	G	G	77775669	3	3	210	1	0	0	0	0	1	0	0	0	10839	681	24	4	553	4	NUDT7	16	77775669	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	6852333	77775669	12579084	178	164628											
MVD	4597	broad.mit.edu	37	chr16	88721708	88721708	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggaaggtgtcgaggcaggTggcgtggaactggttgctgt	20	6	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88721708	G	G	88721708	3	3	210	1	0	0	0	0	1	0	0	0	10088	1696	59	5	422	5	MVD	16	88721708	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	10946039	88721708	1633045	179	164629											
C16orf7	9605	broad.mit.edu	37	chr16	89775334	89775334	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggggcagtagtcttccGcacagacacagatgatccgc	14	11	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89775334	A	A	89775334	3	1	210	1	0	0	0	0	1	0	0	0	1842	1087	38	4	279	4	C16orf7	16	89775334	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	1053626	89775334	579419	180	164630											
TM4SF5	9032	broad.mit.edu	37	chr17	4685709	4685709	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacaacccgactggagcagAtttcgataatgcgtgggggc	13	9	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4685709	G	G	4685709	1	3	210	0	1	0	0	0	0	0	0	0	16094	348	12	5		5	TM4SF5	17	4685709	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08		4685709	76509501	181	164631											
TP53	7157	broad.mit.edu	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578403	A	A	7578403	3	1	210	1	0	0	0	0	1	0	0	0	16505	710	25	3	771	3	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	2892694	7578403	73616807	182	164632											
CCDC55	84081	broad.mit.edu	37	chr17	28512755	28512755	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattcctggaacctgctgcGtaaaaccataaaggagtgtg	10	8	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28512755	A	A	28512755	1	1	210	0	1	0	0	0	0	0	0	0	2853	1160	40	4		4	CCDC55	17	28512755	3'UTR	SNP	G	TCGA-73-4676-01A-01D-1753-08	20934352	28512755	52682455	183	164633											
NF1	4763	broad.mit.edu	37	chr17	29676209	29676209	+	Frame_Shift_Del	DEL	A	-	-													atacactactaactctggttAacaaacacagaaattgtgac							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29676209	-	-	29676209	7	5	210	1	0	1	0	1	0	0	0	0	10451	362	13	0	7516	0	NF1	17	29676209	Frame_Shift_Del	DEL	A	TCGA-73-4676-01A-01D-1753-08	1163454	29676209	51519001	184	164634											
SMARCE1	6605	broad.mit.edu	37	chr17	38787102	38787102	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctttcctcctgccttttGcgggcctgttcctctgcctg	8	17	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38787102	A	A	38787102	2	1	210	1	0	0	0	0	0	0	0	1	14894	1306	46	4		4	SMARCE1	17	38787102	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08	9110893	38787102	42408108	185	164635											
CALCOCO2	10241	broad.mit.edu	37	chr17	46940221	46940221	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccatcaagaaatgccctAtctgcaaagcagatgatatt	6	10	3	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46940221	G	G	46940221	3	3	210	1	0	0	0	0	1	0	0	0	2604	449	16	5	1241	5	CALCOCO2	17	46940221	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	8153119	46940221	34254989	186	164636											
GRIN2C	2905	broad.mit.edu	37	chr17	72846773	72846773	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccagggtcagggctctccAcgatgacaaagggccgctct	13	13	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72846773	G	G	72846773	3	3	210	1	0	0	0	0	1	0	0	0	6847	159	6	5	2490	5	GRIN2C	17	72846773	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	25906552	72846773	8348437	187	164637											
RECQL5	9400	broad.mit.edu	37	chr17	73659097	73659097	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctaagagaagagaaagaggCtgtaactggccctcaggact	12	9	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73659097	G	G	73659097	1	3	210	0	1	0	0	0	0	0	0	0	13311	812	28	4		4	RECQL5	17	73659097	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	812324	73659097	7536113	188	164638											
RHBDF2	79651	broad.mit.edu	37	chr17	74477373	74477373	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggaaggagcccctctgGgaagtgaaactgaccagaaa	12	10	2	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74477373	A	A	74477373	1	1	210	0	1	0	0	0	0	0	0	0	13429	1247	43	4		4	RHBDF2	17	74477373	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	818276	74477373	6717837	189	164639											
ASXL3	80816	broad.mit.edu	37	chr18	31263626	31263626	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgacttatatatggatatAgtaatttctgtaatttatgc	7	3	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31263626	T	T	31263626	1	4	210	0	1	0	0	0	0	0	0	0	1072	435	15	5		5	ASXL3	18	31263626	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08		31263626	46813622	190	164640											
RPRD1A	55197	broad.mit.edu	37	chr18	33611089	33611089	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaagaaaaaaagaaAaatgttaacagtaacaatgc	5	3	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33611089	C	C	33611089	1	2	210	0	1	0	0	0	0	0	0	0	13726	29	1	5		5	RPRD1A	18	33611089	Intron	SNP	A	TCGA-73-4676-01A-01D-1753-08	2347463	33611089	44466159	191	164641											
MUC16	94025	broad.mit.edu	37	chr19	8998961	8998961	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggacataggggcatgtgagGaggggtcagttcttgccctg	17	7	2	1	rs141552376	by1000genomes	TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8998961	C	C	8998961	1	2	210	0	1	0	0	0	0	0	0	0	10067	1189	41	4		4	MUC16	19	8998961	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08		8998961	50130022	192	164642											
OR7G3	390883	broad.mit.edu	37	chr19	9237500	9237500	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gacggccaggatgatgagcaGgttccccagcattgtggcca	14	11	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9237500	C	C	9237500	3	2	210	1	0	0	0	0	1	0	0	0	11318	991	35	4	814	4	OR7G3	19	9237500	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	238539	9237500	49891483	193	164643											
KEAP1	9817	broad.mit.edu	37	chr19	10602335	10602335	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgacccccaccccgatgcGgttacggggcacgctcatgg	13	15	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602335	A	A	10602335	3	1	210	1	0	0	0	0	1	0	0	0	8211	1116	39	4	647	4	KEAP1	19	10602335	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	1364835	10602335	48526648	194	164644											
MAST3	23031	broad.mit.edu	37	chr19	18239661	18239661	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggcaggaccctaagccCttcccatcccctagagccgc	11	18	0	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18239661	A	A	18239661	1	1	210	0	1	0	0	0	0	0	0	0	9418	696	24	2		2	MAST3	19	18239661	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	7637326	18239661	40889322	195	164645											
PRND	23627	broad.mit.edu	37	chr20	4705263	4705263	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcttcagccacctctcTgcggtccagacgaggggcat	11	15	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4705263	C	C	4705263	2	2	210	1	0	0	0	0	0	0	0	1	12649	1567	55	5		5	PRND	20	4705263	Silent	SNP	T	TCGA-73-4676-01A-01D-1753-08		4705263	58320257	196	164646											
C20orf7	79133	broad.mit.edu	37	chr20	13769340	13769340	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttactttgaaaagtaacaTtggctaattttaaagaaaga	6	3	0	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13769340	C	C	13769340	1	2	210	0	1	0	0	0	0	0	0	0	2137	1508	52	5		5	C20orf7	20	13769340	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08	9064077	13769340	49256180	197	164647											
TOP1	7150	broad.mit.edu	37	chr20	39750210	39750211	+	Intron	INS	-	T	T													ccttcatgaagccacccttgINStttttttttatctgacaaac							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39750211	T	T	39750210	6	5	210	0	1	1	1	0	0	0	0	0	16487	1392	48	0		0	TOP1	20	39750210	Intron	INS	-	TCGA-73-4676-01A-01D-1753-08	25980870	39750210	23275310	198	164648											
PPP1R3D	5509	broad.mit.edu	37	chr20	58514506	58514506	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggcggcctcgacgggcgGcgggaaatcgggcaccaggc	19	13	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514506	A	A	58514506	3	1	210	1	0	0	0	0	1	0	0	0	12475	1203	42	4	422	4	PPP1R3D	20	58514506	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	18764296	58514506	4511014	199	164649											
LAMA5	3911	broad.mit.edu	37	chr20	60907678	60907678	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtggggtgtgcacggcCacgcccacctcctggcgggc	16	16	0	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60907678	A	A	60907678	2	1	210	1	0	0	0	0	0	0	0	1	8681	581	21	2		2	LAMA5	20	60907678	Silent	SNP	C	TCGA-73-4676-01A-01D-1753-08	2393172	60907678	2117842	200	164650											
SLCO4A1	28231	broad.mit.edu	37	chr20	61296198	61296198	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccgacctctgcccaccaCtctgaccctcagtctcttct	4	21	5	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61296198	A	A	61296198	1	1	210	0	1	0	0	0	0	0	0	0	14843	580	20	3		3	SLCO4A1	20	61296198	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	388520	61296198	1729322	201	164651											
TMPRSS15	5651	broad.mit.edu	37	chr21	19737631	19737631	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaattggctgcaaaacaTttcacagaatattcatggca	6	8	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19737631	C	C	19737631	1	2	210	0	1	0	0	0	0	0	0	0	16369	1508	52	5		5	TMPRSS15	21	19737631	Intron	SNP	T	TCGA-73-4676-01A-01D-1753-08		19737631	28392264	202	164652											
KCNJ6	3763	broad.mit.edu	37	chr21	38997456	38997456	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagggtttgcccagctaGggcactaaactttggattca	12	8	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38997456	A	A	38997456	1	1	210	0	1	0	0	0	0	0	0	0	8125	1015	35	4		4	KCNJ6	21	38997456	3'UTR	SNP	G	TCGA-73-4676-01A-01D-1753-08	19259825	38997456	9132439	203	164653											
C21orf29	54084	broad.mit.edu	37	chr21	46057210	46057210	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggagggcattgctgagtctCctgctgggaaaacacaggcc	15	10	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46057210	G	G	46057210	1	3	210	0	1	0	0	0	0	0	0	0	2146	870	30	4		4	C21orf29	21	46057210	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	7059754	46057210	2072685	204	164654											
SLC25A18	83733	broad.mit.edu	37	chr22	18073121	18073121	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcctctgcgttgtagtGctacctcaatctcgggagaa	11	11	3	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18073121	A	A	18073121	1	1	210	0	1	0	0	0	0	0	0	0	14594	1334	46	4		4	SLC25A18	22	18073121	3'UTR	SNP	G	TCGA-73-4676-01A-01D-1753-08		18073121	33231445	205	164655											
TFIP11	24144	broad.mit.edu	37	chr22	26892780	26892780	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caactatccaaaaagtccacCatcgggtcacagttccttgg	7	13	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26892780	T	T	26892780	3	4	210	1	0	0	0	0	1	0	0	0	15930	594	21	4	1021	4	TFIP11	22	26892780	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	8819659	26892780	24411786	206	164656											
PLXNB2	23654	broad.mit.edu	37	chr22	50718982	50718982	+	Frame_Shift_Del	DEL	T	-	-													caggagctccaggaagagcgTgtgcatgatgtccgtgtagt							TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50718982	-	-	50718982	7	5	210	1	0	1	0	1	0	0	0	0	12219	1696	59	0	1457	0	PLXNB2	22	50718982	Frame_Shift_Del	DEL	T	TCGA-73-4676-01A-01D-1753-08	23826202	50718982	585584	207	164657											
NCAPH2	29781	broad.mit.edu	37	chr22	50961504	50961504	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctggtctcacggttccCccagctcaatgagtggtgtc	11	14	2	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50961504	T	T	50961504	3	4	210	1	0	0	0	0	1	0	0	0	10305	623	22	4	1702	4	NCAPH2	22	50961504	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	242522	50961504	343062	208	164658											
MXRA5	25878	broad.mit.edu	37	chrX	3239235	3239235	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagacatgagaattgtGgatggggacgaggatgctgg	16	6	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3239235	A	A	3239235	2	1	210	1	0	0	0	0	0	0	0	1	10097	1335	47	4		4	MXRA5	23	3239235	Silent	SNP	G	TCGA-73-4676-01A-01D-1753-08		3239235	152031325	209	164659											
DMD	1756	broad.mit.edu	37	chrX	32613910	32613910	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcagcagttgcgtgatcTccactagattcatcaactac	7	11	3	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32613910	C	C	32613910	2	2	210	1	0	0	0	0	0	0	0	1	4620	1538	54	5		5	DMD	23	32613910	Silent	SNP	T	TCGA-73-4676-01A-01D-1753-08	29374675	32613910	122656650	210	164660											
SSX5	6758	broad.mit.edu	37	chrX	48058167	48058167	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcattgctgatgaaatacaCataggattggccagaactgg	10	7	1	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48058167	G	G	48058167	1	3	210	0	1	0	0	0	0	0	0	0	15326	493	17	4		4	SSX5	23	48058167	5'Flank	SNP	C	TCGA-73-4676-01A-01D-1753-08	15444257	48058167	107212393	211	164661											
KCND1	3750	broad.mit.edu	37	chrX	48823096	48823096	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgctgtcctggagtagatgGagcagagcgataagggcagc	16	9	0	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48823096	A	A	48823096	1	1	210	0	1	0	0	0	0	0	0	0	8088	1189	41	4		4	KCND1	23	48823096	Intron	SNP	G	TCGA-73-4676-01A-01D-1753-08	764929	48823096	106447464	212	164662											
SMC1A	8243	broad.mit.edu	37	chrX	53409548	53409548	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttcgaatgcctgcttgGccttctttgctcgctttcgg	10	12	2	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53409548	T	T	53409548	3	4	210	1	0	0	0	0	1	0	0	0	14895	1203	42	3	557	3	SMC1A	23	53409548	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	4586452	53409548	101861012	213	164663											
GJB1	2705	broad.mit.edu	37	chrX	70443554	70443554	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcaggtgtgaatgaggCaggatgaactggacaggttt	15	4	0	3			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70443554	T	T	70443554	1	4	210	0	1	0	0	0	0	0	0	0	6471	725	25	4		4	GJB1	23	70443554	5'UTR	SNP	C	TCGA-73-4676-01A-01D-1753-08	17034006	70443554	84827006	214	164664											
CAPN6	827	broad.mit.edu	37	chrX	110494550	110494550	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaaaaaaaaagataaatCattatgtttgccattgactt	4	4	1	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110494550	T	T	110494550	1	4	210	0	1	0	0	0	0	0	0	0	2656	841	29	4		4	CAPN6	23	110494550	Intron	SNP	C	TCGA-73-4676-01A-01D-1753-08	40050996	110494550	44776010	215	164665											
SEPT6	23157	broad.mit.edu	37	chrX	118771105	118771105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcagatcctccatgttgaCccgaatcagcatctcccgca	7	17	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118771105	A	A	118771105	3	1	210	1	0	0	0	0	1	0	0	0	14181	507	18	3	501	3	SEPT6	23	118771105	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	8276555	118771105	36499455	216	164666											
XPNPEP2	7512	broad.mit.edu	37	chrX	128877985	128877985	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgtcactcacagccctcCgccagcagatgcagacccag	8	17	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128877985	T	T	128877985	3	4	210	1	0	0	0	0	1	0	0	0	17570	652	23	4	182	4	XPNPEP2	23	128877985	Missense_Mutation	SNP	C	TCGA-73-4676-01A-01D-1753-08	10106880	128877985	26392575	217	164667											
SAGE1	55511	broad.mit.edu	37	chrX	134990731	134990731	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttctatccgggcttattAatatggcaggagctagtatt	10	6	1	0			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134990731	T	T	134990731	3	4	210	1	0	0	0	0	1	0	0	0	13920	362	13	5	1438	5	SAGE1	23	134990731	Missense_Mutation	SNP	A	TCGA-73-4676-01A-01D-1753-08	6112746	134990731	20279829	218	164668											
GPR112	139378	broad.mit.edu	37	chrX	135430519	135430519	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggttgtttgaaaagtcccTgtacagccacttctgggcct	10	11	1	1			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135430519	A	A	135430519	3	1	210	1	0	0	0	0	1	0	0	0	6694	1580	55	5	4664	5	GPR112	23	135430519	Missense_Mutation	SNP	T	TCGA-73-4676-01A-01D-1753-08	439788	135430519	19840041	219	164669											
SLITRK4	139065	broad.mit.edu	37	chrX	142716785	142716785	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaactttctgtcctggagGatctgaaaacatgaacccag	8	10	2	2			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142716785	T	T	142716785	3	4	210	1	0	0	0	0	1	0	0	0	14859	1174	41	3	377	3	SLITRK4	23	142716785	Missense_Mutation	SNP	G	TCGA-73-4676-01A-01D-1753-08	7286266	142716785	12553775	220	164670											
TNFRSF9	3604	broad.mit.edu	37	chr1	7999932	7999932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaacagagcagatcaaatGcacatgataactgggtactc	8	10	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7999932	T	T	7999932	1	4	211	0	1	0	0	0	0	0	0	0	16423	1334	46	3		3	TNFRSF9	1	7999932	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08		7999932	241250689	1	164671											
UBR4	23352	broad.mit.edu	37	chr1	19505757	19505757	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacattagcaaacagatacGggataaagtcaaaaggttac	9	6	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19505757	C	C	19505757	1	2	211	0	1	0	0	0	0	0	0	0	17030	1131	39	4		4	UBR4	1	19505757	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	11505825	19505757	229744864	2	164672											
MACF1	23499	broad.mit.edu	37	chr1	39889968	39889968	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattcatatagatttttggAaggtgtttaatggcttttat	9	2	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39889968	G	G	39889968	1	3	211	0	1	0	0	0	0	0	0	0	9232	261	9	5		5	MACF1	1	39889968	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	20384211	39889968	209360653	3	164673											
KIAA0494	9813	broad.mit.edu	37	chr1	47150235	47150235	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgatcagctggagtttctCtcttagcttggatacctgag	10	9	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47150235	T	T	47150235	3	4	211	1	0	0	0	0	1	0	0	0	8249	922	32	4	385	4	KIAA0494	1	47150235	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	7260267	47150235	202100386	4	164674											
HIAT1	64645	broad.mit.edu	37	chr1	100544124	100544124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagttgataggaactagCgataattatttaaaagtaca	10	3	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100544124	A	A	100544124	1	1	211	0	1	0	0	0	0	0	0	0	7164	783	27	3		3	HIAT1	1	100544124	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	53393889	100544124	148706497	5	164675											
S1PR1	1901	broad.mit.edu	37	chr1	101705235	101705236	+	Frame_Shift_Ins	INS	-	CC	CC													tccttggtcaggactcggagINSccgccgcctgacgttccgca							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CC	101705236	CC	CC	101705235	7	5	211	1	0	1	1	0	0	0	0	0	13904	971	34	0	697	0	S1PR1	1	101705235	Frame_Shift_Ins	INS	-	TCGA-73-4677-01A-01D-1265-08	1161111	101705235	147545386	6	164676											
COL11A1	1301	broad.mit.edu	37	chr1	103480084	103480084	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacccgagcctgctgaagaaTagcttgagcctgagcttcct	10	12	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103480084	C	C	103480084	3	2	211	1	0	0	0	0	1	0	0	0	3699	1406	49	5	4085	5	COL11A1	1	103480084	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	1774849	103480084	145770537	7	164677											
COL11A1	1301	broad.mit.edu	37	chr1	103496663	103496663	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaccttctctggtcttgtGctcctcacctcatctatctg	6	14	6	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103496663	T	T	103496663	1	4	211	0	1	0	0	0	0	0	0	0	3699	1334	46	3		3	COL11A1	1	103496663	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	16579	103496663	145753958	8	164678											
FNDC7	163479	broad.mit.edu	37	chr1	109271373	109271373	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcccaaggggagaaaggaCtgtatcagtgcagcagcaca	13	10	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109271373	G	G	109271373	3	3	211	1	0	0	0	0	1	0	0	0	6031	564	20	4	1519	4	FNDC7	1	109271373	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	5774710	109271373	139979248	9	164679											
GSTM5	2949	broad.mit.edu	37	chr1	110258523	110258523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttctttatctttcttcCtctctttttttccctccaat	0	15	4	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110258523	A	A	110258523	1	1	211	0	1	0	0	0	0	0	0	0	6907	696	24	2		2	GSTM5	1	110258523	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	987150	110258523	138992098	10	164680											
SLC6A17	388662	broad.mit.edu	37	chr1	110734729	110734729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaactgccacttcgatgccGccctggtgtccttcatcaac	7	16	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110734729	T	T	110734729	3	4	211	1	0	0	0	0	1	0	0	0	14794	1087	38	3	1022	3	SLC6A17	1	110734729	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	476206	110734729	138515892	11	164681											
DCLRE1B	64858	broad.mit.edu	37	chr1	114449826	114449826	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacttctccagactagatGtttttttttttttttttttt	5	5	1	3	rs76069885		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114449826	T	T	114449826	1	4	211	0	1	0	0	0	0	0	0	0	4328	1392	48	3		3	DCLRE1B	1	114449826	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3715097	114449826	134800795	12	164682											
TRIM45	80263	broad.mit.edu	37	chr1	117660813	117660813	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tattgaactttgttcagcttCctgagccgttctaccaccac	6	13	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117660813	T	T	117660813	2	4	211	1	0	0	0	0	0	0	0	1	16645	854	30	4		4	TRIM45	1	117660813	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	3210987	117660813	131589808	13	164683											
ADAM30	11085	broad.mit.edu	37	chr1	120436737	120436737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgttttagattcttcCtgtacagtttttgttttaga	7	4	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120436737	A	A	120436737	3	1	211	1	0	0	0	0	1	0	0	0	248	680	24	2	153	2	ADAM30	1	120436737	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2775924	120436737	128813884	14	164684											
NBPF9	400818	broad.mit.edu	37	chr1	144828879	144828879	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagttccatttggaagcccAgacataggatgggtcagtgg	13	8	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144828879	G	G	144828879	1	3	211	0	1	0	0	0	0	0	0	0	10294	203	7	5		5	NBPF9	1	144828879	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	24392142	144828879	104421742	15	164685											
NBPF10	100132406	broad.mit.edu	37	chr1	145601447	145601447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaggctcagacctcaaCccaaactcaggatctgtgta	7	12	5	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145601447	A	A	145601447	1	1	211	0	1	0	0	0	0	0	0	0	10287	522	18	3		3	NBPF10	1	145601447	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	772568	145601447	103649174	16	164686											
HIST2H2AC	8338	broad.mit.edu	37	chr1	149858739	149858739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcgggcaacgcggctcGggacaacaagaagacgcgca	16	12	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149858739	T	T	149858739	3	4	211	1	0	0	0	0	1	0	0	0	7245	1116	39	1	217	1	HIST2H2AC	1	149858739	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	4257292	149858739	99391882	17	164687											
SPRR2G	6706	broad.mit.edu	37	chr1	153122400	153122400	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatacttctgctggcaggGtgggtatggttgcacaggag	17	6	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153122400	T	T	153122400	3	4	211	1	0	0	0	0	1	0	0	0	15220	1261	44	3	38	3	SPRR2G	1	153122400	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3263661	153122400	96128221	18	164688											
NTRK1	4914	broad.mit.edu	37	chr1	156834152	156834152	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctctccccacagctacatCgagaaccagcagcatctgca	7	17	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156834152	A	A	156834152	2	1	211	1	0	0	0	0	0	0	0	1	10801	874	31	3		3	NTRK1	1	156834152	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	3711752	156834152	92416469	19	164689											
PYHIN1	149628	broad.mit.edu	37	chr1	158911926	158911926	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctacagtggctacgcagAcacagttctttcatgtgaag	10	9	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158911926	G	G	158911926	3	3	211	1	0	0	0	0	1	0	0	0	12973	275	10	5	753	5	PYHIN1	1	158911926	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	2077774	158911926	90338695	20	164690											
CADM3	57863	broad.mit.edu	37	chr1	159169442	159169442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattttcctgatgttagtaCctgttccctgctgtgtaaga	8	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159169442	A	A	159169442	1	1	211	0	1	0	0	0	0	0	0	0	2594	522	18	3		3	CADM3	1	159169442	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	257516	159169442	90081179	21	164691											
OR10J3	441911	broad.mit.edu	37	chr1	159284326	159284326	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatgataatcacattgcCagagagagtcagcaggtaca	11	8	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159284326	T	T	159284326	3	4	211	1	0	0	0	0	1	0	0	0	11005	594	21	4	867	4	OR10J3	1	159284326	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	114884	159284326	89966295	22	164692											
OR10J5	127385	broad.mit.edu	37	chr1	159504984	159504984	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtacgtcactgagagaaCaaggtctttttctattgaac	10	7	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159504984	A	A	159504984	3	1	211	1	0	0	0	0	1	0	0	0	11006	478	17	3	117	3	OR10J5	1	159504984	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	220658	159504984	89745637	23	164693											
FMO4	2329	broad.mit.edu	37	chr1	171308806	171308806	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggagaaacctgaaaagtGctaaggctgatgccaaggtc	12	10	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171308806	T	T	171308806	1	4	211	0	1	0	0	0	0	0	0	0	6015	1334	46	3		3	FMO4	1	171308806	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	11803822	171308806	77941815	24	164694											
TNFSF4	7292	broad.mit.edu	37	chr1	173174474	173174474	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtttagtgtcctagaaacCagcaccctgcttttcttccc	7	13	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173174474	G	G	173174474	1	3	211	0	1	0	0	0	0	0	0	0	16433	609	21	4		4	TNFSF4	1	173174474	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1865668	173174474	76076147	25	164695											
SLC9A11	284525	broad.mit.edu	37	chr1	173478718	173478718	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataacttacctcatcaataaGacttgattcaaaatactgat	3	8	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173478718	T	T	173478718	3	4	211	1	0	0	0	0	1	0	0	0	14825	942	33	3	366	3	SLC9A11	1	173478718	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	304244	173478718	75771903	26	164696											
RC3H1	149041	broad.mit.edu	37	chr1	173953758	173953758	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggctgctgctcagggacCtggaggccaaaagaaaagat	13	8	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173953758	A	A	173953758	5	1	211	1	0	0	0	0	0	0	1	0	13274	695	24	2	3242	2	RC3H1	1	173953758	Splice_Site	SNP	C	TCGA-73-4677-01A-01D-1265-08	475040	173953758	75296863	27	164697											
RABGAP1L	9910	broad.mit.edu	37	chr1	174245089	174245089	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggtgacttttcttaaaAgatcccttattgtttgcttt	6	6	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174245089	T	T	174245089	1	4	211	0	1	0	0	0	0	0	0	0	13073	87	3	5		5	RABGAP1L	1	174245089	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	291331	174245089	75005532	28	164698											
TNR	7143	broad.mit.edu	37	chr1	175334162	175334162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgtggtgatggagccCacaatgggctcagaggtcac	13	11	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175334162	A	A	175334162	2	1	211	1	0	0	0	0	0	0	0	1	16461	581	21	2		2	TNR	1	175334162	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	1089073	175334162	73916459	29	164699											
PAPPA2	60676	broad.mit.edu	37	chr1	176668278	176668278	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgagccaagcttacaggCctggagccctgaggtccacc	12	15	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176668278	A	A	176668278	3	1	211	1	0	0	0	0	1	0	0	0	11527	739	26	3	2868	3	PAPPA2	1	176668278	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1334116	176668278	72582343	30	164700											
ABL2	27	broad.mit.edu	37	chr1	179190911	179190911	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcccctaattgataattattCccatagaggattttaccaaa	4	9	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179190911	A	A	179190911	1	1	211	0	1	0	0	0	0	0	0	0	93	870	30	3		3	ABL2	1	179190911	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2522633	179190911	70059710	31	164701											
FAM129A	116496	broad.mit.edu	37	chr1	184792550	184792550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggagccttcatcacagGccatcataacaaacagaact	9	11	3	1	rs144981050	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184792550	T	T	184792550	1	4	211	0	1	0	0	0	0	0	0	0	5482	1218	42	3		3	FAM129A	1	184792550	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	5601639	184792550	64458071	32	164702											
PLA2G4A	5321	broad.mit.edu	37	chr1	186919871	186919871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacccaaaggtgagtgagcCggaaacttttctggcccaga	12	10	1	3	rs28395827		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186919871	A	A	186919871	1	1	211	0	1	0	0	0	0	0	0	0	12096	667	23	1		1	PLA2G4A	1	186919871	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2127321	186919871	62330750	33	164703											
PLA2G4A	5321	broad.mit.edu	37	chr1	186919898	186919898	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctggcccagatccatgAggaaaggatatgaacactct	9	9	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186919898	G	G	186919898	1	3	211	0	1	0	0	0	0	0	0	0	12096	319	11	5		5	PLA2G4A	1	186919898	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	27	186919898	62330723	34	164704											
FAM5C	339479	broad.mit.edu	37	chr1	190423729	190423729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccttagagaaacttatGtatacacaaccttcaaggat	5	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190423729	T	T	190423729	1	4	211	0	1	0	0	0	0	0	0	0	5645	1392	48	3		3	FAM5C	1	190423729	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3503831	190423729	58826892	35	164705											
CFHR1	3078	broad.mit.edu	37	chr1	196794714	196794714	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagttttctattactcctgtGaatataattttgtgtctcct	5	7	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196794714	T	T	196794714	4	4	211	1	0	0	0	0	0	1	0	0	3314	1291	45	3	172	3	CFHR1	1	196794714	Nonsense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	6370985	196794714	52455907	36	164706											
LGR6	59352	broad.mit.edu	37	chr1	202287787	202287787	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcgcagacgggctcctcTactgtcccgtggccttcctc	9	17	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	202287787	C	C	202287787	3	2	211	1	0	0	0	0	1	0	0	0	8830	1522	53	5	2573	5	LGR6	1	202287787	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	5493073	202287787	46962834	37	164707											
PRELP	5549	broad.mit.edu	37	chr1	203453308	203453308	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtggggtgggccggggcgGggccgaaggcaaggaggttg	25	6	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203453308	T	T	203453308	1	4	211	0	1	0	0	0	0	0	0	0	12579	1247	43	2		2	PRELP	1	203453308	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1165521	203453308	45797313	38	164708											
USH2A	7399	broad.mit.edu	37	chr1	215955621	215955621	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttacaaatcttagtgttcgGaagaaatgcaatactatagc	7	7	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215955621	A	A	215955621	1	1	211	0	1	0	0	0	0	0	0	0	17162	1189	41	4		4	USH2A	1	215955621	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	12502313	215955621	33295000	39	164709											
USH2A	7399	broad.mit.edu	37	chr1	216595449	216595449	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccgctgggtacagaacTgaatactttcagcagcagca	9	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216595449	A	A	216595449	3	1	211	1	0	0	0	0	1	0	0	0	17162	1580	55	5	15676	5	USH2A	1	216595449	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	639828	216595449	32655172	40	164710											
SLC30A10	55532	broad.mit.edu	37	chr1	220088847	220088847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagttttgttaagactttGtccgtggtcactcagacagc	10	9	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220088847	T	T	220088847	3	4	211	1	0	0	0	0	1	0	0	0	14668	1386	48	3	59	3	SLC30A10	1	220088847	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3493398	220088847	29161774	41	164711											
IARS2	55699	broad.mit.edu	37	chr1	220307795	220307795	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaagaccagctcggggGttggtttcagtcatccttat	12	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220307795	T	T	220307795	3	4	211	1	0	0	0	0	1	0	0	0	7544	1261	44	3	1947	3	IARS2	1	220307795	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	218948	220307795	28942826	42	164712											
LBR	3930	broad.mit.edu	37	chr1	225600352	225600352	+	Intron	DEL	A	-	-													ataaaagcatagaatcctttAaaaaaaaaaaaaaaaggaag							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	225600352	-	-	225600352	6	5	211	0	1	1	0	1	0	0	0	0	8724	377	13	0		0	LBR	1	225600352	Intron	DEL	A	TCGA-73-4677-01A-01D-1265-08	5292557	225600352	23650269	43	164713											
OBSCN	84033	broad.mit.edu	37	chr1	228482069	228482069	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtggatgccggggagtactCgtgtgtgtgcgggcaggaga	21	6	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228482069	T	T	228482069	3	4	211	1	0	0	0	0	1	0	0	0	10907	893	31	4	11510	4	OBSCN	1	228482069	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2881717	228482069	20768552	44	164714											
LYST	1130	broad.mit.edu	37	chr1	235902104	235902104	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtataatgaagaatcttaggCgggtgcacccaatttccacc	9	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	235902104	A	A	235902104	1	1	211	0	1	0	0	0	0	0	0	0	9216	783	27	3		3	LYST	1	235902104	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	7420035	235902104	13348517	45	164715											
MTR	4548	broad.mit.edu	37	chr1	237057790	237057790	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaagagctgagcaaggCctatgaggatgatggtgacg	17	5	0	6			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237057790	A	A	237057790	3	1	211	1	0	0	0	0	1	0	0	0	10052	739	26	3	3456	3	MTR	1	237057790	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1155686	237057790	12192831	46	164716											
RYR2	6262	broad.mit.edu	37	chr1	237843841	237843841	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagacctctctgctctggagGacatgcttccaacaaagaga	9	12	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237843841	T	T	237843841	3	4	211	1	0	0	0	0	1	0	0	0	13880	1174	41	3	9227	3	RYR2	1	237843841	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	786051	237843841	11406780	47	164717											
ZP4	57829	broad.mit.edu	37	chr1	238048890	238048890	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtttttatctgcaagagGcagaaataaggatttgaagt	10	3	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238048890	T	T	238048890	1	4	211	0	1	0	0	0	0	0	0	0	18347	1218	42	3		3	ZP4	1	238048890	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	205049	238048890	11201731	48	164718											
AKT3	10000	broad.mit.edu	37	chr1	243663046	243663046	+	Nonstop_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgaaacttactttttatTattttttccagttacccagc	3	8	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	243663046	G	G	243663046	4	3	211	1	0	0	0	0	0	0	0	0	481	1761	61	5	4	5	AKT3	1	243663046	Nonstop_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	5614156	243663046	5587575	49	164719											
AKT3	10000	broad.mit.edu	37	chr1	243809238	243809238	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcatccatctcttcctctCctatattatcaatttgtgaa	4	11	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	243809238	T	T	243809238	3	4	211	1	0	0	0	0	1	0	0	0	481	855	30	4	1141	4	AKT3	1	243809238	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	146192	243809238	5441383	50	164720											
OR13G1	441933	broad.mit.edu	37	chr1	247836300	247836300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggagttcaggctttttgGtgaggcccagaataatgaac	12	8	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247836300	T	T	247836300	3	4	211	1	0	0	0	0	1	0	0	0	11036	1261	44	3	883	3	OR13G1	1	247836300	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	4027062	247836300	1414321	51	164721											
OR6F1	343169	broad.mit.edu	37	chr1	247876030	247876030	+	Frame_Shift_Del	DEL	G	-	-													gcccagtaagagaaagtcctGgggcagagttttgttgcctg							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	247876030	-	-	247876030	7	5	211	1	0	1	0	1	0	0	0	0	11295	1357	47	0	902	0	OR6F1	1	247876030	Frame_Shift_Del	DEL	G	TCGA-73-4677-01A-01D-1265-08	39730	247876030	1374591	52	164722											
OR11L1	391189	broad.mit.edu	37	chr1	248004939	248004939	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagatggcttggccccagGacagcaggttggctaggaga	17	8	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248004939	T	T	248004939	3	4	211	1	0	0	0	0	1	0	0	0	11024	1174	41	3	712	3	OR11L1	1	248004939	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	128909	248004939	1245682	53	164723											
OR2M4	26245	broad.mit.edu	37	chr1	248402357	248402357	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactggcattgatggaaaatAtttccatggttctcctcatc	7	10	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248402357	T	T	248402357	3	4	211	1	0	0	0	0	1	0	0	0	11106	449	16	5	129	5	OR2M4	1	248402357	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	397418	248402357	848264	54	164724											
OR2M4	26245	broad.mit.edu	37	chr1	248402564	248402564	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccctgcttggagctgaaTgtttcttgttggctgtcatg	12	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248402564	A	A	248402564	3	1	211	1	0	0	0	0	1	0	0	0	11106	1464	51	5	336	5	OR2M4	1	248402564	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	207	248402564	848057	55	164725											
PXDN	7837	broad.mit.edu	37	chr2	1668737	1668737	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggtcttacctcccttGgtccaggcgatgacgggcgg	15	13	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1668737	T	T	1668737	2	4	211	1	0	0	0	0	0	0	0	1	12955	1335	47	2		2	PXDN	2	1668737	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08		1668737	241530636	56	164726											
ALLC	55821	broad.mit.edu	37	chr2	3743913	3743913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttgggaaactgcaagaaGgctggaccggccaccaatat	13	9	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3743913	T	T	3743913	3	4	211	1	0	0	0	0	1	0	0	0	534	1000	35	2	746	2	ALLC	2	3743913	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	2075176	3743913	239455460	57	164727											
GREB1	9687	broad.mit.edu	37	chr2	11733003	11733004	+	Missense_Mutation	DNP	CC	AA	AA													ggcagtaccagcaggcgccgCcgcagcccttcccgcccgcg							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11733004	AA	AA	11733003	3	1	211	1	0	0	0	0	1	0	0	0	6826	739	26	3	1593	3	GREB1	2	11733003	Missense_Mutation	DNP	CC	TCGA-73-4677-01A-01D-1265-08	7989090	11733003	231466370	58	164728											
STRN	6801	broad.mit.edu	37	chr2	37121062	37121062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctgttccatcgcctgCacttctagattcattgtctc	6	14	4	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37121062	A	A	37121062	3	1	211	1	0	0	0	0	1	0	0	0	15447	710	25	3	1480	3	STRN	2	37121062	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	25388059	37121062	206078311	59	164729											
PKDCC	91461	broad.mit.edu	37	chr2	42284546	42284546	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggacaggtgagccagtgGgagaagcccttccaagggag	16	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42284546	C	C	42284546	1	2	211	0	1	0	0	0	0	0	0	0	12064	1247	43	4		4	PKDCC	2	42284546	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	5163484	42284546	200914827	60	164730											
ABCG8	64241	broad.mit.edu	37	chr2	44102557	44102557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcctgtggacaggtaaGgcctgcccccggggcctggg	17	13	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44102557	T	T	44102557	1	4	211	0	1	0	0	0	0	0	0	0	72	1015	35	2		2	ABCG8	2	44102557	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1818011	44102557	199096816	61	164731											
PROKR1	10887	broad.mit.edu	37	chr2	68882018	68882018	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcttgccctaggtatctGgctattgtccatccgctgag	10	11	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68882018	T	T	68882018	2	4	211	1	0	0	0	0	0	0	0	1	12658	1335	47	2		2	PROKR1	2	68882018	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	24779461	68882018	174317355	62	164732											
ARHGAP25	9938	broad.mit.edu	37	chr2	69002465	69002465	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgaagaagcagaggtcCatcgtgaagaactggcagca	14	8	0	5			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69002465	A	A	69002465	2	1	211	1	0	0	0	0	0	0	0	1	876	581	21	2		2	ARHGAP25	2	69002465	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	120447	69002465	174196908	63	164733											
LRRTM4	80059	broad.mit.edu	37	chr2	77745490	77745490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatgtgcagggcccagatCcattaaccgatatatccatg	8	10	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77745490	A	A	77745490	3	1	211	1	0	0	0	0	1	0	0	0	9129	855	30	3	281	3	LRRTM4	2	77745490	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	8743025	77745490	165453883	64	164734											
SUCLG1	8802	broad.mit.edu	37	chr2	84652801	84652801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctcaaattcatgactctGctggtaaatggtaaatggct	9	8	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84652801	T	T	84652801	1	4	211	0	1	0	0	0	0	0	0	0	15482	1334	46	3		3	SUCLG1	2	84652801	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	6907311	84652801	158546572	65	164735											
MRPL35	51318	broad.mit.edu	37	chr2	86437740	86437740	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaagaggcgaaactggtaCgttgatgatccttatcagaa	12	6	1	4	rs1052060		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86437740	T	T	86437740	2	4	211	1	0	0	0	0	0	0	0	1	9892	547	19	4		4	MRPL35	2	86437740	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	1784939	86437740	156761633	66	164736											
PROM2	150696	broad.mit.edu	37	chr2	95953076	95953076	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttgccaggcatgggggGtggcgtgggtggggggcact	22	7	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95953076	T	T	95953076	1	4	211	0	1	0	0	0	0	0	0	0	12662	1276	44	3		3	PROM2	2	95953076	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	9515336	95953076	147246297	67	164737											
MGAT4A	11320	broad.mit.edu	37	chr2	99260596	99260596	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattcatgaaatcttgcccaCgacatacactgaggcttgcg	8	12	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99260596	A	A	99260596	1	1	211	0	1	0	0	0	0	0	0	0	9638	551	19	3		3	MGAT4A	2	99260596	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3307520	99260596	143938777	68	164738											
IL1F10	84639	broad.mit.edu	37	chr2	113831983	113831983	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcctgttgcagacaactGctgtgcaggtgagcttctgg	13	9	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113831983	A	A	113831983	3	1	211	1	0	0	0	0	1	0	0	0	7722	1319	46	4	116	4	IL1F10	2	113831983	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	14571387	113831983	129367390	69	164739											
GLI2	2736	broad.mit.edu	37	chr2	121741979	121741979	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtagcttcaggagaacaGggagagcgccccttcagagt	15	9	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121741979	A	A	121741979	1	1	211	0	1	0	0	0	0	0	0	0	6502	1015	35	4		4	GLI2	2	121741979	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	7909996	121741979	121457394	70	164740											
CYP27C1	339761	broad.mit.edu	37	chr2	127952938	127952938	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccttaaggagagctctgAccagcgggaccttggggaca	13	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127952938	G	G	127952938	3	3	211	1	0	0	0	0	1	0	0	0	4193	275	10	5	442	5	CYP27C1	2	127952938	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	6210959	127952938	115246435	71	164741											
MYO7B	4648	broad.mit.edu	37	chr2	128324318	128324318	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacagccgccatatgggcgAgctgcccccgcatgtctttg	11	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128324318	G	G	128324318	3	3	211	1	0	0	0	0	1	0	0	0	10177	304	11	5	400	5	MYO7B	2	128324318	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	371380	128324318	114875055	72	164742											
CFC1B	653275	broad.mit.edu	37	chr2	131356232	131356232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taccctctccgaaagcccggGagtaggggagcggctcctcc	13	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131356232	T	T	131356232	3	4	211	1	0	0	0	0	1	0	0	0	3310	1174	41	3	1153	3	CFC1B	2	131356232	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3031914	131356232	111843141	73	164743											
GPR148	344561	broad.mit.edu	37	chr2	131486901	131486901	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttccctcaagcctgctGgctgcagccacactggctgt	9	16	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131486901	T	T	131486901	2	4	211	1	0	0	0	0	0	0	0	1	6718	1335	47	2		2	GPR148	2	131486901	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	130669	131486901	111712472	74	164744											
NCKAP5	344148	broad.mit.edu	37	chr2	133541745	133541745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggacccagtccctcctgCtgggcatcctggagctgtgc	12	15	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133541745	A	A	133541745	3	1	211	1	0	0	0	0	1	0	0	0	10318	797	28	3	3118	3	NCKAP5	2	133541745	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2054844	133541745	109657628	75	164745											
ZRANB3	84083	broad.mit.edu	37	chr2	136033319	136033319	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaatataatcctttacagCacctgcctaaatattaaaag	3	9	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136033319	T	T	136033319	3	4	211	1	0	0	0	0	1	0	0	0	18353	710	25	4	2318	4	ZRANB3	2	136033319	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2491574	136033319	107166054	76	164746											
RND3	390	broad.mit.edu	37	chr2	151328209	151328209	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtactaacatctgtccgcaGatcagacttgcagccgacca	8	13	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151328209	T	T	151328209	3	4	211	1	0	0	0	0	1	0	0	0	13532	933	33	3	327	3	RND3	2	151328209	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	15294890	151328209	91871164	77	164747											
CCDC148	130940	broad.mit.edu	37	chr2	159035632	159035632	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcacatttttttttttacTgatttctcaagtccaaatca	3	8	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159035632	A	A	159035632	1	1	211	0	1	0	0	0	0	0	0	0	2808	1595	55	5		5	CCDC148	2	159035632	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	7707423	159035632	84163741	78	164748											
MARCH7	64844	broad.mit.edu	37	chr2	160585754	160585754	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagggccactcttttggggGtatttaaaaaatgtgttagc	11	6	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160585754	A	A	160585754	1	1	211	0	1	0	0	0	0	0	0	0	9398	1276	44	4		4	MARCH7	2	160585754	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1550122	160585754	82613619	79	164749											
KCNH7	90134	broad.mit.edu	37	chr2	163374208	163374208	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatttattacccattaataTatgtttccatttaaaaaaaa	1	6	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163374208	C	C	163374208	1	2	211	0	1	0	0	0	0	0	0	0	8107	1421	49	5		5	KCNH7	2	163374208	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	2788454	163374208	79825165	80	164750											
SCN3A	6328	broad.mit.edu	37	chr2	165984179	165984179	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctgactcactgctgaactCttcagtatttaagttttcaa	5	9	5	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165984179	T	T	165984179	3	4	211	1	0	0	0	0	1	0	0	0	14031	922	32	4	2691	4	SCN3A	2	165984179	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2609971	165984179	77215194	81	164751											
MYO3B	140469	broad.mit.edu	37	chr2	171458104	171458104	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttatagacaaggaaaaaaaCtaggctagaaccaacttatt	6	6	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171458104	G	G	171458104	1	3	211	0	1	0	0	0	0	0	0	0	10171	580	20	4		4	MYO3B	2	171458104	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5473925	171458104	71741269	82	164752											
ITGA6	3655	broad.mit.edu	37	chr2	173337487	173337487	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcaatttcttccgtccCgtgcatgcgtacaggcctgc	8	14	3	0	rs151216623	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173337487	T	T	173337487	1	4	211	0	1	0	0	0	0	0	0	0	7950	667	23	4		4	ITGA6	2	173337487	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1879383	173337487	69861886	83	164753											
AGPS	8540	broad.mit.edu	37	chr2	178305772	178305772	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataccaattggtggtaggtaTtgtgccttttgaattttaat	9	4	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178305772	C	C	178305772	1	2	211	0	1	0	0	0	0	0	0	0	394	1508	52	5		5	AGPS	2	178305772	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	4968285	178305772	64893601	84	164754											
TTN	7273	broad.mit.edu	37	chr2	179404270	179404270	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcaatggtataccaggcgGctttaggcacttctcgtctc	9	11	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179404270	T	T	179404270	3	4	211	1	0	0	0	0	1	0	0	0	16861	1203	42	3	9501	3	TTN	2	179404270	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1098498	179404270	63795103	85	164755											
NUP35	129401	broad.mit.edu	37	chr2	184022342	184022342	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggttttttttaaacttAaatttttttttgagttttga	7	1	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184022342	T	T	184022342	1	4	211	0	1	0	0	0	0	0	0	0	10858	377	13	5		5	NUP35	2	184022342	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	4618072	184022342	59177031	86	164756											
COL3A1	1281	broad.mit.edu	37	chr2	189859867	189859867	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctaaatgctagcaccaCaaatgggcagttcttgtata	8	9	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189859867	A	A	189859867	1	1	211	0	1	0	0	0	0	0	0	0	3720	493	17	3		3	COL3A1	2	189859867	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5837525	189859867	53339506	87	164757											
ICOS	29851	broad.mit.edu	37	chr2	204822744	204822744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaattttctgtgaaaatctGgatttctcacttttaactag	6	6	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204822744	T	T	204822744	1	4	211	0	1	0	0	0	0	0	0	0	7556	1363	47	2		2	ICOS	2	204822744	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	14962877	204822744	38376629	88	164758											
PARD3B	117583	broad.mit.edu	37	chr2	205986568	205986568	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaacaaaacaagagtcccCgagtaccaaggctgggagga	12	10	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205986568	T	T	205986568	4	4	211	1	0	0	0	0	0	1	0	0	11538	644	23	4	1090	4	PARD3B	2	205986568	Nonsense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1163824	205986568	37212805	89	164759											
PIKFYVE	200576	broad.mit.edu	37	chr2	209197945	209197945	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagcctgggtgacagagcGagactccatctcaaaaaaaa	9	11	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209197945	T	T	209197945	1	4	211	0	1	0	0	0	0	0	0	0	12019	1073	37	3		3	PIKFYVE	2	209197945	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3211377	209197945	34001428	90	164760											
ABCA12	26154	broad.mit.edu	37	chr2	215866254	215866254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caattttagcacaaagagatGctcaaaccctaatagaacag	6	9	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215866254	T	T	215866254	1	4	211	0	1	0	0	0	0	0	0	0	30	1334	46	3		3	ABCA12	2	215866254	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	6668309	215866254	27333119	91	164761											
ABCA12	26154	broad.mit.edu	37	chr2	215976248	215976248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatttttgaaatgaaacaCtaaagtggtaccaaaataaa	5	4	0	2	rs144574003	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215976248	A	A	215976248	1	1	211	0	1	0	0	0	0	0	0	0	30	580	20	3		3	ABCA12	2	215976248	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	109994	215976248	27223125	92	164762											
CDK5R2	8941	broad.mit.edu	37	chr2	219824752	219824752	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctggaagcgcctggtGgccgcgtccgccaagaagaa	13	14	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219824752	T	T	219824752	2	4	211	1	0	0	0	0	0	0	0	1	3174	1335	47	2		2	CDK5R2	2	219824752	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	3848504	219824752	23374621	93	164763											
EPHA4	2043	broad.mit.edu	37	chr2	222307544	222307544	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtaaagggggtgacccaCgtacatttagtgaccacgcc	11	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222307544	T	T	222307544	1	4	211	0	1	0	0	0	0	0	0	0	5211	551	19	4		4	EPHA4	2	222307544	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2482792	222307544	20891829	94	164764											
SERPINE2	5270	broad.mit.edu	37	chr2	224862775	224862775	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accactttgaaccctggagtCtaactcatgcttcattcaca	5	13	4	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224862775	A	A	224862775	1	1	211	0	1	0	0	0	0	0	0	0	14225	928	32	3		3	SERPINE2	2	224862775	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2555231	224862775	18336598	95	164765											
SPHKAP	80309	broad.mit.edu	37	chr2	228882330	228882330	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgctttcgcagctggaGgccttcagccggctccacct	12	14	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228882330	T	T	228882330	2	4	211	1	0	0	0	0	0	0	0	1	15166	987	35	2		2	SPHKAP	2	228882330	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	4019555	228882330	14317043	96	164766											
SPHKAP	80309	broad.mit.edu	37	chr2	228884754	228884754	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgggatatttgttgatGtatttgtcttccaaagcata	11	4	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228884754	T	T	228884754	4	4	211	1	0	0	0	0	0	1	0	0	15166	1372	48	3	4310	3	SPHKAP	2	228884754	Nonsense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	2424	228884754	14314619	97	164767											
CHRND	1144	broad.mit.edu	37	chr2	233391499	233391499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatggccactcccttcctGggaaacgtgctgcggctgct	11	15	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233391499	T	T	233391499	1	4	211	0	1	0	0	0	0	0	0	0	3425	1363	47	2		2	CHRND	2	233391499	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	4506745	233391499	9807874	98	164768											
SPP2	6694	broad.mit.edu	37	chr2	234975197	234975197	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatttttggggacatgttGggatctcataaatggagaaa	12	3	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234975197	T	T	234975197	3	4	211	1	0	0	0	0	1	0	0	0	15205	1339	47	2	483	2	SPP2	2	234975197	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1583698	234975197	8224176	99	164769											
COL6A3	1293	broad.mit.edu	37	chr2	238244913	238244913	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctggctttgctgctacagGcttcgctgccgttgctggct	13	12	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238244913	A	A	238244913	3	1	211	1	0	0	0	0	1	0	0	0	3733	1203	42	4	723	4	COL6A3	2	238244913	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3269716	238244913	4954460	100	164770											
AGXT	189	broad.mit.edu	37	chr2	241817407	241817407	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaggcccgtacagggcctctCacccacgcactgagccaggc	11	17	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241817407	T	T	241817407	1	4	211	0	1	0	0	0	0	0	0	0	404	841	29	4		4	AGXT	2	241817407	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3572494	241817407	1381966	101	164771											
CNTN6	27255	broad.mit.edu	37	chr3	1413906	1413922	+	Intron	DEL	AGTATTCAGAAATATGT	-	-													taatttcaaatgaatgataaAgtattcagaaatatgtattt					rs9869771	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1413922	-	-	1413906	6	5	211	0	1	1	0	1	0	0	0	0	3677	87	3	0		0	CNTN6	3	1413906	Intron	DEL	AGTATTCAGAAATATGT	TCGA-73-4677-01A-01D-1265-08		1413906	196608524	102	164772											
FANCD2	2177	broad.mit.edu	37	chr3	10106488	10106488	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgggattgccataaacctCctgccgctgctgttttctca	9	12	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10106488	T	T	10106488	2	4	211	1	0	0	0	0	0	0	0	1	5722	842	30	4		4	FANCD2	3	10106488	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	8692582	10106488	187915942	103	164773											
BTD	686	broad.mit.edu	37	chr3	15687019	15687019	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtgtggtctgtggggcGgactctggccatcatgttga	16	7	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15687019	T	T	15687019	1	4	211	0	1	0	0	0	0	0	0	0	1560	1131	39	1		1	BTD	3	15687019	3'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	5580531	15687019	182335411	104	164774											
EFHB	151651	broad.mit.edu	37	chr3	19974919	19974919	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatctggcccctcggcttGggttagtccaatgtccacct	9	15	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19974919	C	C	19974919	3	2	211	1	0	0	0	0	1	0	0	0	4985	1357	47	4	1961	4	EFHB	3	19974919	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	4287900	19974919	178047511	105	164775											
SUSD5	26032	broad.mit.edu	37	chr3	33194357	33194357	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccatccccacacctgcCaggagcagcagtaggcacag	9	17	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33194357	A	A	33194357	2	1	211	1	0	0	0	0	0	0	0	1	15529	581	21	2		2	SUSD5	3	33194357	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	13219438	33194357	164828073	106	164776											
KIF15	56992	broad.mit.edu	37	chr3	44856678	44856678	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagttagacaaataaaaaaGataatttattggctccaata	6	5	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44856678	A	A	44856678	1	1	211	0	1	0	0	0	0	0	0	0	8347	957	33	4		4	KIF15	3	44856678	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	11662321	44856678	153165752	107	164777											
STAB1	23166	broad.mit.edu	37	chr3	52546617	52546617	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcccttcccttaggagctGgaggcaaatgcccacttctc	8	14	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52546617	T	T	52546617	2	4	211	1	0	0	0	0	0	0	0	1	15355	1335	47	2		2	STAB1	3	52546617	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	7689939	52546617	145475813	108	164778											
GXYLT2	727936	broad.mit.edu	37	chr3	72978358	72978358	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaactttgccaaatacTttcttcaccaatctcatgag	5	10	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72978358	C	C	72978358	1	2	211	0	1	0	0	0	0	0	0	0	6969	1624	56	5		5	GXYLT2	3	72978358	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	20431741	72978358	125044072	109	164779											
EPHA3	2042	broad.mit.edu	37	chr3	89157043	89157043	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcggggctcacgctcttcaaAgcacgttctcaccgaagcct	10	15	4	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89157043	T	T	89157043	1	4	211	0	1	0	0	0	0	0	0	0	5210	87	3	5		5	EPHA3	3	89157043	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	16178685	89157043	108865387	110	164780											
PROS1	5627	broad.mit.edu	37	chr3	93617190	93617190	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaagctacagcaattattGcagaacgtctgtattttcct	6	8	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93617190	A	A	93617190	1	1	211	0	1	0	0	0	0	0	0	0	12664	1334	46	4		4	PROS1	3	93617190	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	4460147	93617190	104405240	111	164781											
ARL13B	200894	broad.mit.edu	37	chr3	93772009	93772009	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accataactgttttgtgcatTtggttttctttcttttctta	5	7	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93772009	A	A	93772009	1	1	211	0	1	0	0	0	0	0	0	0	931	1856	64	5		5	ARL13B	3	93772009	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	154819	93772009	104250421	112	164782											
EPHA6	285220	broad.mit.edu	37	chr3	96533570	96533570	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgggcagcctggaccctcgTgccctgttcccgggacctcg	13	17	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96533570	A	A	96533570	3	1	211	1	0	0	0	0	1	0	0	0	5213	1696	59	5	105	5	EPHA6	3	96533570	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	2761561	96533570	101488860	113	164783											
CBLB	868	broad.mit.edu	37	chr3	105453050	105453050	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacaaattgttagtatcaaAttttcccaaataaaatgacg	5	7	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105453050	T	T	105453050	1	4	211	0	1	0	0	0	0	0	0	0	2727	116	4	5		5	CBLB	3	105453050	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	8919480	105453050	92569380	114	164784											
CBLB	868	broad.mit.edu	37	chr3	105572073	105572073	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacactctatcatgtccacaCaacaatgaaattgtctaaaa	3	10	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105572073	G	G	105572073	1	3	211	0	1	0	0	0	0	0	0	0	2727	493	17	4		4	CBLB	3	105572073	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	119023	105572073	92450357	115	164785											
CD200R1L	344807	broad.mit.edu	37	chr3	112538752	112538752	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttctgagacctttaaataCagacaggggtgaaaaatcat	10	6	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112538752	A	A	112538752	1	1	211	0	1	0	0	0	0	0	0	0	3012	493	17	3		3	CD200R1L	3	112538752	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	6966679	112538752	85483678	116	164786											
UPK1B	7348	broad.mit.edu	37	chr3	118905430	118905430	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gattaccaagctcaataatcAaatgtccttcatcgctaaaa	4	10	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118905430	T	T	118905430	1	4	211	0	1	0	0	0	0	0	0	0	17134	145	5	5		5	UPK1B	3	118905430	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	6366678	118905430	79117000	117	164787											
UPK1B	7348	broad.mit.edu	37	chr3	118922641	118922641	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttttagaagaaataaaaAcaaacaaacaaaaaaatctg	4	4	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118922641	G	G	118922641	1	3	211	0	1	0	0	0	0	0	0	0	17134	58	2	5		5	UPK1B	3	118922641	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	17211	118922641	79099789	118	164788											
GPR156	165829	broad.mit.edu	37	chr3	119911990	119911990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggtcccacagagcgcaCgaggtacagagtgaacctca	12	12	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119911990	A	A	119911990	1	1	211	0	1	0	0	0	0	0	0	0	6726	551	19	3		3	GPR156	3	119911990	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	989349	119911990	78110440	119	164789											
CASR	846	broad.mit.edu	37	chr3	121994653	121994653	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtactcattctttgctcctCtttaggtcctgaagcaccta	6	12	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121994653	A	A	121994653	1	1	211	0	1	0	0	0	0	0	0	0	2708	928	32	3		3	CASR	3	121994653	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2082663	121994653	76027777	120	164790											
DNAJB8	165721	broad.mit.edu	37	chr3	128181682	128181682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggaaattctccaaagcctGccgagaaggcccccctcagg	10	16	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128181682	T	T	128181682	3	4	211	1	0	0	0	0	1	0	0	0	4666	1319	46	3	295	3	DNAJB8	3	128181682	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	6187029	128181682	69840748	121	164791											
EPHB1	2047	broad.mit.edu	37	chr3	134967276	134967276	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacagccggccccggtttgCggagattgtcaacaccctag	12	13	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134967276	G	G	134967276	3	3	211	1	0	0	0	0	1	0	0	0	5216	768	27	4	2669	4	EPHB1	3	134967276	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	6785594	134967276	63055154	122	164792											
PCOLCE2	26577	broad.mit.edu	37	chr3	142546352	142546352	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcttgctacggcctccaGgcttctcctccaggcagcac	9	17	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142546352	A	A	142546352	1	1	211	0	1	0	0	0	0	0	0	0	11689	1015	35	4		4	PCOLCE2	3	142546352	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	7579076	142546352	55476078	123	164793											
MECOM	2122	broad.mit.edu	37	chr3	168840365	168840365	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtagcctacaaattcactgTaccttggcacagttttcaca	6	11	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168840365	C	C	168840365	1	2	211	0	1	0	0	0	0	0	0	0	9515	1653	57	5		5	MECOM	3	168840365	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	26294013	168840365	29182065	124	164794											
PRKCI	5584	broad.mit.edu	37	chr3	170011269	170011269	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctccgataaccctgacCagaacacagaggattatctc	9	12	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170011269	A	A	170011269	3	1	211	1	0	0	0	0	1	0	0	0	12620	595	21	2	1444	2	PRKCI	3	170011269	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1170904	170011269	28011161	125	164795											
NAALADL2	254827	broad.mit.edu	37	chr3	175520848	175520848	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttcaatacttatagagGcttgggaacactgcaaaccc	9	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175520848	T	T	175520848	3	4	211	1	0	0	0	0	1	0	0	0	10224	1203	42	3	2299	3	NAALADL2	3	175520848	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	5509579	175520848	22501582	126	164796											
USP13	8975	broad.mit.edu	37	chr3	179399708	179399708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgcatgaatacatttttgGcctttggaagggaacatgtt	10	5	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179399708	T	T	179399708	3	4	211	1	0	0	0	0	1	0	0	0	17170	1203	42	3	217	3	USP13	3	179399708	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3878860	179399708	18622722	127	164797											
DVL3	1857	broad.mit.edu	37	chr3	183885564	183885565	+	Intron	INS	-	T	T													gggcagggcaggccggagggINScccaggacttgccttggacc							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183885565	T	T	183885564	6	5	211	0	1	1	1	0	0	0	0	0	4877	1218	42	0		0	DVL3	3	183885564	Intron	INS	-	TCGA-73-4677-01A-01D-1265-08	4485856	183885564	14136866	128	164798											
DVL3	1857	broad.mit.edu	37	chr3	183885808	183885808	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccataccgtcaacaagatcAccttctccgagcagtgctac	7	15	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183885808	T	T	183885808	3	4	211	1	0	0	0	0	1	0	0	0	4877	159	6	5	1503	5	DVL3	3	183885808	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	244	183885808	14136622	129	164799											
DNAJB11	51726	broad.mit.edu	37	chr3	186299261	186299261	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggccctgggcgcttccaAatgacccaggaggtggtctg	15	12	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186299261	G	G	186299261	2	3	211	1	0	0	0	0	0	0	0	1	4656	11	1	5		5	DNAJB11	3	186299261	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	2413453	186299261	11723169	130	164800											
ZNF595	152687	broad.mit.edu	37	chr4	59488	59488	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cataattcctaatacttcctCagagtttcattttctttctt	2	10	4	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59488	A	A	59488	1	1	211	0	1	0	0	0	0	0	0	0	18152	841	29	3		3	ZNF595	4	59488	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08		59488	191094788	131	164801											
JAKMIP1	152789	broad.mit.edu	37	chr4	6058531	6058531	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacattcatggaagcaaacaGatggtcaagtaacaaacttt	7	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6058531	T	T	6058531	1	4	211	0	1	0	0	0	0	0	0	0	8010	957	33	3		3	JAKMIP1	4	6058531	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	5999043	6058531	185095745	132	164802											
MRFAP1	93621	broad.mit.edu	37	chr4	6642869	6642869	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcggccgagggccgggcgGccaagaggtgcgagaaggcc	20	12	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6642869	A	A	6642869	3	1	211	1	0	0	0	0	1	0	0	0	9855	1203	42	4	282	4	MRFAP1	4	6642869	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	584338	6642869	184511407	133	164803											
SH3TC1	54436	broad.mit.edu	37	chr4	8230363	8230363	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcgccgtggagatgggccAcgtggagagtgagtgcccca	18	10	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8230363	T	T	8230363	3	4	211	1	0	0	0	0	1	0	0	0	14374	159	6	5	2984	5	SH3TC1	4	8230363	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	1587494	8230363	182923913	134	164804											
DRD5	1816	broad.mit.edu	37	chr4	9784739	9784739	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgtcatctatgccttcaaCgccgactttcagaaggtgtt	8	13	4	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9784739	G	G	9784739	3	3	211	1	0	0	0	0	1	0	0	0	4800	535	19	4	1088	4	DRD5	4	9784739	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1554376	9784739	181369537	135	164805											
GBA3	57733	broad.mit.edu	37	chr4	22748924	22748924	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttttcctcctaggaattGattattacaacaagatcatc	4	9	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22748924	T	T	22748924	3	4	211	1	0	0	0	0	1	0	0	0	6330	1290	45	3	302	3	GBA3	4	22748924	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	12964185	22748924	168405352	136	164806											
SEL1L3	23231	broad.mit.edu	37	chr4	25823805	25823805	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccggaactagatgatttaAaaacagtctctttcctagac	7	9	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25823805	G	G	25823805	1	3	211	0	1	0	0	0	0	0	0	0	14125	29	1	5		5	SEL1L3	4	25823805	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	3074881	25823805	165330471	137	164807											
PCDH7	5099	broad.mit.edu	37	chr4	30726120	30726120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccgtacaagatctaccaCcagccaacacatttgtggga	9	12	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30726120	A	A	30726120	3	1	211	1	0	0	0	0	1	0	0	0	11610	507	18	3	3078	3	PCDH7	4	30726120	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4902315	30726120	160428156	138	164808											
RHOH	399	broad.mit.edu	37	chr4	40245040	40245040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaagtgcgtgttggtgggcGactctgctgtggggaaaacc	16	8	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40245040	T	T	40245040	3	4	211	1	0	0	0	0	1	0	0	0	13449	1058	37	3	36	3	RHOH	4	40245040	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	9518920	40245040	150909236	139	164809											
GABRG1	2565	broad.mit.edu	37	chr4	46043115	46043115	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcgtatgtgtatccttcCttccctccaagatcctgttc	6	13	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46043115	A	A	46043115	4	1	211	1	0	0	0	0	0	1	0	0	6231	690	24	2	113	2	GABRG1	4	46043115	Nonsense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	5798075	46043115	145111161	140	164810											
PDGFRA	5156	broad.mit.edu	37	chr4	54343299	54343299	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctgggtgctcacataGcaaatggtaaacagtgtgtg	15	6	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54343299	A	A	54343299	1	1	211	0	1	0	0	0	0	0	0	0	11755	986	34	4		4	PDGFRA	4	54343299	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	8300184	54343299	136810977	141	164811											
PDGFRA	5156	broad.mit.edu	37	chr4	55131305	55131305	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggtctgtcactgatgggcAcatcactgagtttctctaga	10	10	4	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55131305	T	T	55131305	1	4	211	0	1	0	0	0	0	0	0	0	11755	174	6	5		5	PDGFRA	4	55131305	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	788006	55131305	136022971	142	164812											
KDR	3791	broad.mit.edu	37	chr4	55948682	55948682	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtattatttctaagactAtttttaaaagacgtacttac	4	5	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55948682	G	G	55948682	1	3	211	0	1	0	0	0	0	0	0	0	8209	464	16	5		5	KDR	4	55948682	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	817377	55948682	135205594	143	164813											
KDR	3791	broad.mit.edu	37	chr4	55980229	55980229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggcccctatctctcaaGcaaacttcactggggcttat	8	12	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55980229	T	T	55980229	1	4	211	0	1	0	0	0	0	0	0	0	8209	986	34	3		3	KDR	4	55980229	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	31547	55980229	135174047	144	164814											
CEP135	9662	broad.mit.edu	37	chr4	56886973	56886973	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaattttttttacatttgaCaatgtttttatgtgttctct	4	5	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56886973	T	T	56886973	1	4	211	0	1	0	0	0	0	0	0	0	3277	493	17	4		4	CEP135	4	56886973	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	906744	56886973	134267303	145	164815											
IGFBP7	3490	broad.mit.edu	37	chr4	57938864	57938864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgtgggcaaaaggctaCagcaggagttggtgaccttc	13	9	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57938864	A	A	57938864	1	1	211	0	1	0	0	0	0	0	0	0	7654	493	17	3		3	IGFBP7	4	57938864	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1051891	57938864	133215412	146	164816											
TECRL	253017	broad.mit.edu	37	chr4	65155503	65155503	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgcaaaacattttaaaCactttcagtgtgatacacct	4	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65155503	A	A	65155503	1	1	211	0	1	0	0	0	0	0	0	0	15868	493	17	3		3	TECRL	4	65155503	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	7216639	65155503	125998773	147	164817											
TECRL	253017	broad.mit.edu	37	chr4	65194246	65194246	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccacattctagctgcagAccaactcgagaagggtacca	8	12	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65194246	G	G	65194246	2	3	211	1	0	0	0	0	0	0	0	1	15868	262	10	5		5	TECRL	4	65194246	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	38743	65194246	125960030	148	164818											
TECRL	253017	broad.mit.edu	37	chr4	65275151	65275151	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcagttaaatactgctGgagaacctttgaaaggtcaa	9	7	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65275151	T	T	65275151	1	4	211	0	1	0	0	0	0	0	0	0	15868	1363	47	2		2	TECRL	4	65275151	5'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	80905	65275151	125879125	149	164819											
EPHA5	2044	broad.mit.edu	37	chr4	66467674	66467674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggtcctacatctctgaCctctgtattcagtttcataa	6	10	4	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66467674	A	A	66467674	3	1	211	1	0	0	0	0	1	0	0	0	5212	507	18	3	2582	3	EPHA5	4	66467674	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1192523	66467674	124686602	150	164820											
UGT2B11	10720	broad.mit.edu	37	chr4	70080244	70080244	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagagtggatgcatcattgGgatcaaaaagaatggaagct	12	4	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70080244	C	C	70080244	3	2	211	1	0	0	0	0	1	0	0	0	17083	1232	43	4	1416	4	UGT2B11	4	70080244	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3612570	70080244	121074032	151	164821											
SMR3B	10879	broad.mit.edu	37	chr4	71250059	71250059	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcctactaatattgccccAcagtaatactgaattcaaaa	4	10	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71250059	C	C	71250059	1	2	211	0	1	0	0	0	0	0	0	0	14926	174	6	5		5	SMR3B	4	71250059	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	1169815	71250059	119904217	152	164822											
WDFY3	23001	broad.mit.edu	37	chr4	85593954	85593954	+	3'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagactgttttcaatgccttCcaagctgggacaggagaatc	11	9	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85593954	A	A	85593954	1	1	211	0	1	0	0	0	0	0	0	0	17397	870	30	3		3	WDFY3	4	85593954	3'UTR	SNP	C	TCGA-73-4677-01A-01D-1265-08	14343895	85593954	105560322	153	164823											
GPRIN3	285513	broad.mit.edu	37	chr4	90170270	90170270	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggggctggtggagacggatCtgctctcgacactcgccact	14	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90170270	G	G	90170270	3	3	211	1	0	0	0	0	1	0	0	0	6797	913	32	4	1342	4	GPRIN3	4	90170270	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4576316	90170270	100984006	154	164824											
UNC5C	8633	broad.mit.edu	37	chr4	96123907	96123907	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcatcctgggtgtcatccAgacagtagactcggatgctg	14	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96123907	G	G	96123907	3	3	211	1	0	0	0	0	1	0	0	0	17119	188	7	5	704	5	UNC5C	4	96123907	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	5953637	96123907	95030369	155	164825											
CCDC109B	55013	broad.mit.edu	37	chr4	110595237	110595237	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaatgactgttggtatggGctattccatgtatcgggaat	12	6	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110595237	A	A	110595237	1	1	211	0	1	0	0	0	0	0	0	0	2771	1218	42	4		4	CCDC109B	4	110595237	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	14471330	110595237	80559039	156	164826											
QRFPR	84109	broad.mit.edu	37	chr4	122261765	122261765	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcttgcaaatgaaagcaCctgcagtaaggaaataggac	9	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122261765	A	A	122261765	3	1	211	1	0	0	0	0	1	0	0	0	12986	521	18	3	974	3	QRFPR	4	122261765	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	11666528	122261765	68892511	157	164827											
SPATA5	166378	broad.mit.edu	37	chr4	123844151	123844151	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacgctcagtccctcccaCcacgctgtgcactgctgcgc	8	18	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123844151	G	G	123844151	1	3	211	0	1	0	0	0	0	0	0	0	15127	522	18	4		4	SPATA5	4	123844151	5'Flank	SNP	C	TCGA-73-4677-01A-01D-1265-08	1582386	123844151	67310125	158	164828											
SPATA5	166378	broad.mit.edu	37	chr4	123978213	123978213	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttacatccattataaagttCtgaacatctattacaaggtc	4	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123978213	G	G	123978213	1	3	211	0	1	0	0	0	0	0	0	0	15127	928	32	4		4	SPATA5	4	123978213	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	134062	123978213	67176063	159	164829											
PHF17	79960	broad.mit.edu	37	chr4	129793096	129793096	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataatcagactgcagtcaaAgtgcctacaacacctgccag	7	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129793096	C	C	129793096	3	2	211	1	0	0	0	0	1	0	0	0	11923	69	3	5	2273	5	PHF17	4	129793096	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	5814883	129793096	61361180	160	164830											
KIAA0922	23240	broad.mit.edu	37	chr4	154547494	154547494	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatatgaaaactttttaaaGatgcaggaaagtaaaatctg	7	3	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154547494	C	C	154547494	1	2	211	0	1	0	0	0	0	0	0	0	8271	957	33	4		4	KIAA0922	4	154547494	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	24754398	154547494	36606782	161	164831											
TDO2	6999	broad.mit.edu	37	chr4	156838451	156838451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaggcaaagctgacatTtgtttccagggccaactgat	9	11	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156838451	A	A	156838451	1	1	211	0	1	0	0	0	0	0	0	0	15849	1856	64	5		5	TDO2	4	156838451	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	2290957	156838451	34315825	162	164832											
GRIA2	2891	broad.mit.edu	37	chr4	158257521	158257521	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctattactttcctttttttcCcttacagaaagctgatattg	4	9	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158257521	G	G	158257521	1	3	211	0	1	0	0	0	0	0	0	0	6834	638	22	4		4	GRIA2	4	158257521	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1419070	158257521	32896755	163	164833											
TRIM60	166655	broad.mit.edu	37	chr4	165961514	165961514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaaagagaatgccatgtGtgaaaaacacaaccagtttc	9	8	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165961514	T	T	165961514	3	4	211	1	0	0	0	0	1	0	0	0	16660	1377	48	3	292	3	TRIM60	4	165961514	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	7703993	165961514	25192762	164	164834											
GPM6A	2823	broad.mit.edu	37	chr4	176883577	176883577	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagtgggagcaaaagcaAgcctgccaccaacctaggac	10	14	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176883577	T	T	176883577	1	4	211	0	1	0	0	0	0	0	0	0	6680	87	3	5		5	GPM6A	4	176883577	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	10922063	176883577	14270699	165	164835											
WWC2	80014	broad.mit.edu	37	chr4	184210880	184210880	+	Intron	DEL	G	-	-													ccaacttacacttctgttttGcgcataagtctttagatgtt							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	184210880	-	-	184210880	6	5	211	0	1	1	0	1	0	0	0	0	17539	1334	46	0		0	WWC2	4	184210880	Intron	DEL	G	TCGA-73-4677-01A-01D-1265-08	7327303	184210880	6943396	166	164836											
TRIML2	205860	broad.mit.edu	37	chr4	189026283	189026283	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaatgtctgtccatttcatCcatataggagttggccagag	10	8	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189026283	A	A	189026283	1	1	211	0	1	0	0	0	0	0	0	0	16676	870	30	3		3	TRIML2	4	189026283	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	4815403	189026283	2127993	167	164837											
FRG1	2483	broad.mit.edu	37	chr4	190882991	190882991	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacagaaagaaatttcagaGcttccaagaccacaaactta	5	9	1	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190882991	A	A	190882991	3	1	211	1	0	0	0	0	1	0	0	0	6106	971	34	4	674	4	FRG1	4	190882991	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1856708	190882991	271285	168	164838											
MED10	84246	broad.mit.edu	37	chr5	6378709	6378709	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgacttccgtttcctctggGggagcgcgggcgagctcttg	15	12	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6378709	A	A	6378709	1	1	211	0	1	0	0	0	0	0	0	0	9519	1247	43	4		4	MED10	5	6378709	5'Flank	SNP	G	TCGA-73-4677-01A-01D-1265-08		6378709	174536551	169	164839											
ADCY2	108	broad.mit.edu	37	chr5	7521012	7521012	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggagcacctggtctggcaGgtgggtgcacctccacatcc	13	13	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7521012	C	C	7521012	3	2	211	1	0	0	0	0	1	0	0	0	294	1014	35	4	580	4	ADCY2	5	7521012	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1142303	7521012	173394248	170	164840											
FBXL7	23194	broad.mit.edu	37	chr5	15928571	15928571	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgaggccgtctttgatgtgGtgtccctctgccctaatctg	11	12	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15928571	C	C	15928571	3	2	211	1	0	0	0	0	1	0	0	0	5781	1261	44	4	710	4	FBXL7	5	15928571	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	8407559	15928571	164986689	171	164841											
C5orf42	65250	broad.mit.edu	37	chr5	37153742	37153742	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctagcttaaagaaaacaaAgttctcattattttgaaaaa	4	7	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37153742	G	G	37153742	1	3	211	0	1	0	0	0	0	0	0	0	2324	87	3	5		5	C5orf42	5	37153742	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	21225171	37153742	143761518	172	164842											
C7	730	broad.mit.edu	37	chr5	40965101	40965101	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgtaaggctgacatgatCctgttcaagttttaggagcg	11	8	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40965101	A	A	40965101	1	1	211	0	1	0	0	0	0	0	0	0	2400	870	30	3		3	C7	5	40965101	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3811359	40965101	139950159	173	164843											
HEATR7B2	133558	broad.mit.edu	37	chr5	41049501	41049501	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagcttctgtgtattctGcaggtaccacaaaagtcagg	10	10	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41049501	T	T	41049501	3	4	211	1	0	0	0	0	1	0	0	0	7102	1319	46	3	3491	3	HEATR7B2	5	41049501	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	84400	41049501	139865759	174	164844											
C6	729	broad.mit.edu	37	chr5	41196041	41196041	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggcaatgcagcggcctagtCaagaaaagcaaacaaaatca	9	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41196041	A	A	41196041	1	1	211	0	1	0	0	0	0	0	0	0	2338	841	29	3		3	C6	5	41196041	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	146540	41196041	139719219	175	164845											
HCN1	348980	broad.mit.edu	37	chr5	45396799	45396799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgcgtatgaatactgctttCcccaagaatcattctgcaac	7	11	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45396799	A	A	45396799	3	1	211	1	0	0	0	0	1	0	0	0	7062	855	30	3	1667	3	HCN1	5	45396799	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4200758	45396799	135518461	176	164846											
ITGA2	3673	broad.mit.edu	37	chr5	52347218	52347218	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgtaatgacagcccattAataaatgtctcctctgttga	6	8	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52347218	T	T	52347218	1	4	211	0	1	0	0	0	0	0	0	0	7945	377	13	5		5	ITGA2	5	52347218	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	6950419	52347218	128568042	177	164847											
DDX4	54514	broad.mit.edu	37	chr5	55059013	55059013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttttcagatgctggtgaGtgtaataagcgagataatac	10	6	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55059013	T	T	55059013	3	4	211	1	0	0	0	0	1	0	0	0	4393	1020	36	3	230	3	DDX4	5	55059013	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	2711795	55059013	125856247	178	164848											
AP3B1	8546	broad.mit.edu	37	chr5	77409635	77409635	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttttctaggcctgactcCcgtccactctcactgtcctg	7	15	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77409635	T	T	77409635	2	4	211	1	0	0	0	0	0	0	0	1	746	610	22	4		4	AP3B1	5	77409635	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	22350622	77409635	103505625	179	164849											
VCAN	1462	broad.mit.edu	37	chr5	82836721	82836722	+	Nonsense_Mutation	DNP	GG	CT	CT													gtcaacctttctttaactgaGgaaacatttgagggctctgc							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	82836722	CT	CT	82836721	4	2	211	1	0	0	0	0	0	1	0	0	17265	991	35	4	7925	4	VCAN	5	82836721	Nonsense_Mutation	DNP	GG	TCGA-73-4677-01A-01D-1265-08	5427086	82836721	98078539	180	164850											
PCSK1	5122	broad.mit.edu	37	chr5	95761717	95761717	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactatctccagtacccttcCcatcagagttcaggcagctc	6	15	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95761717	T	T	95761717	1	4	211	0	1	0	0	0	0	0	0	0	11694	638	22	4		4	PCSK1	5	95761717	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	12924996	95761717	85153543	181	164851											
SEMA6A	57556	broad.mit.edu	37	chr5	115783392	115783392	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgatgatcacagacgcagtaGacggtgatgcccgagaagac	13	10	1	6			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115783392	A	A	115783392	2	1	211	1	0	0	0	0	0	0	0	1	14152	929	33	4		4	SEMA6A	5	115783392	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	20021675	115783392	65131868	182	164852											
HSD17B4	3295	broad.mit.edu	37	chr5	118824886	118824886	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtgtatattctttatttcaGatcttgtggaagccctgaag	9	6	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118824886	T	T	118824886	5	4	211	1	0	0	0	0	0	0	1	0	7453	956	33	3	656	3	HSD17B4	5	118824886	Splice_Site	SNP	G	TCGA-73-4677-01A-01D-1265-08	3041494	118824886	62090374	183	164853											
FBN2	2201	broad.mit.edu	37	chr5	127627262	127627262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatagtacaaagccagggGggcagaggcactggaagccc	15	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127627262	T	T	127627262	3	4	211	1	0	0	0	0	1	0	0	0	5760	1232	43	2	2555	2	FBN2	5	127627262	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	8802376	127627262	53287998	184	164854											
PHF15	23338	broad.mit.edu	37	chr5	133914427	133914427	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taggaaggcccgaggccgcaCccgcctgcctgccaagaaga	13	15	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133914427	T	T	133914427	3	4	211	1	0	0	0	0	1	0	0	0	11921	507	18	4	1831	4	PHF15	5	133914427	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	6287165	133914427	47000833	185	164855											
MYOT	9499	broad.mit.edu	37	chr5	137217708	137217708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgatcaggatgcaatcCaggagaaattttacccacca	8	9	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137217708	A	A	137217708	3	1	211	1	0	0	0	0	1	0	0	0	10188	595	21	2	748	2	MYOT	5	137217708	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	3303281	137217708	43697552	186	164856											
CDC25C	995	broad.mit.edu	37	chr5	137622831	137622831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttatctccagccctcccCtactaatggccacaatgtcg	7	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137622831	A	A	137622831	1	1	211	0	1	0	0	0	0	0	0	0	3094	696	24	2		2	CDC25C	5	137622831	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	405123	137622831	43292429	187	164857											
KDM3B	51780	broad.mit.edu	37	chr5	137721771	137721771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagagagaaagcatagagGggaaagatggccggaggagg	19	3	0	5			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137721771	T	T	137721771	3	4	211	1	0	0	0	0	1	0	0	0	8197	1232	43	2	867	2	KDM3B	5	137721771	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	98940	137721771	43193489	188	164858											
DNAJC18	202052	broad.mit.edu	37	chr5	138773172	138773172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgtgccttcatgcagttaCagcagccacaggggtcatga	11	10	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138773172	A	A	138773172	3	1	211	1	0	0	0	0	1	0	0	0	4677	478	17	3	988	3	DNAJC18	5	138773172	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1051401	138773172	42142088	189	164859											
SLC4A9	83697	broad.mit.edu	37	chr5	139742048	139742048	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtttttctgccttctcctGggcccctgtatgctgggaaa	11	11	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139742048	T	T	139742048	2	4	211	1	0	0	0	0	0	0	0	1	14774	1335	47	2		2	SLC4A9	5	139742048	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	968876	139742048	41173212	190	164860											
PCDHA3	56145	broad.mit.edu	37	chr5	140182490	140182490	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcactgctgatgcctcggGtgggtggcatcggtggcgca	18	11	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140182490	A	A	140182490	3	1	211	1	0	0	0	0	1	0	0	0	11619	1261	44	4	1710	4	PCDHA3	5	140182490	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	440442	140182490	40732770	191	164861											
PCDHA5	56143	broad.mit.edu	37	chr5	140201397	140201397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagtctgggatcccggCtcctgctgctctggcttctc	13	13	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140201397	A	A	140201397	3	1	211	1	0	0	0	0	1	0	0	0	11621	797	28	3	39	3	PCDHA5	5	140201397	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	18907	140201397	40713863	192	164862											
PCDHA7	56141	broad.mit.edu	37	chr5	140216113	140216113	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctgttggtgcttaccctGctgctgtacacggcgttgcg	13	11	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140216113	T	T	140216113	2	4	211	1	0	0	0	0	0	0	0	1	11623	1306	46	3		3	PCDHA7	5	140216113	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	14716	140216113	40699147	193	164863											
PCDHB10	56126	broad.mit.edu	37	chr5	140574291	140574291	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggaggagcagggcggcCtcggtgggtcgctgctcggt	20	10	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140574291	T	T	140574291	2	4	211	1	0	0	0	0	0	0	0	1	11629	668	24	4		4	PCDHB10	5	140574291	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	358178	140574291	40340969	194	164864											
PCDH12	51294	broad.mit.edu	37	chr5	141324868	141324868	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgctagctagtgagttAcaagattttagaaaccagct	9	10	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141324868	G	G	141324868	1	3	211	0	1	0	0	0	0	0	0	0	11604	406	14	5		5	PCDH12	5	141324868	3'UTR	SNP	A	TCGA-73-4677-01A-01D-1265-08	750577	141324868	39590392	195	164865											
LARS	51520	broad.mit.edu	37	chr5	145562167	145562167	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaggcctcccacgaaactAaagcacacgcttcacacctg	7	17	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145562167	G	G	145562167	1	3	211	0	1	0	0	0	0	0	0	0	8706	377	13	5		5	LARS	5	145562167	5'UTR	SNP	A	TCGA-73-4677-01A-01D-1265-08	4237299	145562167	35353093	196	164866											
SH3TC2	79628	broad.mit.edu	37	chr5	148406827	148406827	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctccttcagggagcatAgcagtggctcaagcacatcc	10	13	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148406827	T	T	148406827	3	4	211	1	0	0	0	0	1	0	0	0	14375	420	15	5	1426	5	SH3TC2	5	148406827	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	2844660	148406827	32508433	197	164867											
SH3TC2	79628	broad.mit.edu	37	chr5	148410979	148410979	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taatcaaatatgattcaggtCgtcaacagaatagtggtcat	8	6	4	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148410979	T	T	148410979	1	4	211	0	1	0	0	0	0	0	0	0	14375	899	31	4		4	SH3TC2	5	148410979	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	4152	148410979	32504281	198	164868											
PDE6A	5145	broad.mit.edu	37	chr5	149245634	149245634	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgctttgtaaagtatcacCcactggtcacctgctagggt	10	11	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149245634	A	A	149245634	1	1	211	0	1	0	0	0	0	0	0	0	11739	638	22	2		2	PDE6A	5	149245634	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	834655	149245634	31669626	199	164869											
SYNPO	11346	broad.mit.edu	37	chr5	150028579	150028579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttttgggatccaggcgCcagggggcaccagccagatg	16	12	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150028579	T	T	150028579	3	4	211	1	0	0	0	0	1	0	0	0	15575	739	26	4	1480	4	SYNPO	5	150028579	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	782945	150028579	30886681	200	164870											
LARP1	23367	broad.mit.edu	37	chr5	154183157	154183157	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagccctccaccatcgCccgctctctaccaaccactg	5	21	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154183157	A	A	154183157	3	1	211	1	0	0	0	0	1	0	0	0	8700	739	26	3	2110	3	LARP1	5	154183157	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4154578	154183157	26732103	201	164871											
LCP2	3937	broad.mit.edu	37	chr5	169701312	169701312	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acaccatactcacaaaggacGaccagcccccattgtcctct	5	17	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169701312	T	T	169701312	4	4	211	1	0	0	0	0	0	1	0	0	8764	1059	37	3	1348	3	LCP2	5	169701312	Nonsense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	15518155	169701312	11213948	202	164872											
STK10	6793	broad.mit.edu	37	chr5	171482523	171482523	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaaactgtataaggccCaggtcccgccaaacctggcc	8	16	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171482523	G	G	171482523	1	3	211	0	1	0	0	0	0	0	0	0	15404	609	21	4		4	STK10	5	171482523	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1781211	171482523	9432737	203	164873											
HK3	3101	broad.mit.edu	37	chr5	176314590	176314590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttcaaccggaatggggCcagggtctcctccagcaggc	14	12	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176314590	A	A	176314590	3	1	211	1	0	0	0	0	1	0	0	0	7259	739	26	3	1345	3	HK3	5	176314590	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4832067	176314590	4600670	204	164874											
GRK6	2870	broad.mit.edu	37	chr5	176860330	176860330	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctcagccagcgtttgcttCcccaccccttgccacaggca	8	18	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176860330	T	T	176860330	1	4	211	0	1	0	0	0	0	0	0	0	6859	870	30	4		4	GRK6	5	176860330	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	545740	176860330	4054930	205	164875											
BTNL9	153579	broad.mit.edu	37	chr5	180477326	180477326	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtccgtctccatccagaaTctcctcttgagccagaagaa	8	13	3	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180477326	A	A	180477326	3	1	211	1	0	0	0	0	1	0	0	0	1578	1432	50	5	703	5	BTNL9	5	180477326	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	3616996	180477326	437934	206	164876											
FARS2	10667	broad.mit.edu	37	chr6	5404731	5404731	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagttatctgatatagatgGgccaggatattttctttatt	8	4	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5404731	T	T	5404731	1	4	211	0	1	0	0	0	0	0	0	0	5735	1247	43	2		2	FARS2	6	5404731	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08		5404731	165710336	207	164877											
GPLD1	2822	broad.mit.edu	37	chr6	24466972	24466972	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtggaccaaaatgccatatCatccagtcctccaagaaaat	6	11	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24466972	T	T	24466972	3	4	211	1	0	0	0	0	1	0	0	0	6679	826	29	4	1829	4	GPLD1	6	24466972	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	19062241	24466972	146648095	208	164878			1	131		4	4	428	C		9.092955e-08
GPLD1	2822	broad.mit.edu	37	chr6	24467100	24467100	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatggtactattcctggtatCtttataatcctttaagattt	5	6	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24467100	T	T	24467100	1	4	211	0	1	0	0	0	0	0	0	0	6679	928	32	4		4	GPLD1	6	24467100	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	128	24467100	146647967	209	164879			1	131		4	4	428	C		9.092955e-08
GPLD1	2822	broad.mit.edu	37	chr6	24467377	24467377	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caaaatcagctgcaaattgtCctctgagttacgcttacatt	6	10	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24467377	T	T	24467377	1	4	211	0	1	0	0	0	0	0	0	0	6679	870	30	4		4	GPLD1	6	24467377	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	277	24467377	146647690	210	164880			1	131		4	4	428	C		9.092955e-08
GPLD1	2822	broad.mit.edu	37	chr6	24467399	24467399	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgagttacgcttacatttCtaagaactggatatgtgaac	8	7	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24467399	T	T	24467399	3	4	211	1	0	0	0	0	1	0	0	0	6679	922	32	4	1945	4	GPLD1	6	24467399	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	22	24467399	146647668	211	164881			1	131		4	4	428	C		9.092955e-08
ZNF184	7738	broad.mit.edu	37	chr6	27419486	27419486	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgaaaggctttaccacactCagcacactcataaggcttgg	8	12	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27419486	A	A	27419486	4	1	211	1	0	0	0	0	0	1	0	0	17877	835	29	3	407	3	ZNF184	6	27419486	Nonsense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2952087	27419486	143695581	212	164882											
GPX5	2880	broad.mit.edu	37	chr6	28501750	28501750	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggtttagcactcctgtcctCatccctctgagattttgggc	9	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28501750	A	A	28501750	3	1	211	1	0	0	0	0	1	0	0	0	6809	826	29	3	490	3	GPX5	6	28501750	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1082264	28501750	142613317	213	164883											
ZNF311	282890	broad.mit.edu	37	chr6	28971177	28971177	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataagactttctataaaTgctcattaatgaacagattt	4	5	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28971177	G	G	28971177	1	3	211	0	1	0	0	0	0	0	0	0	17960	1479	51	5		5	ZNF311	6	28971177	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	469427	28971177	142143890	214	164884											
OR12D2	26529	broad.mit.edu	37	chr6	29364696	29364696	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggatatctgttactctacgGtgacactgccaaaaatgctg	9	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29364696	C	C	29364696	3	2	211	1	0	0	0	0	1	0	0	0	11025	1261	44	4	222	4	OR12D2	6	29364696	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	393519	29364696	141750371	215	164885											
HLA-G	3135	broad.mit.edu	37	chr6	29795820	29795820	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcaacccctcctcgcccCcaggctcccactccatgagg	7	21	1	1	rs115525403	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29795820	T	T	29795820	1	4	211	0	1	0	0	0	0	0	0	0	7279	638	22	4		4	HLA-G	6	29795820	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	431124	29795820	141319247	216	164886											
HLA-G	3135	broad.mit.edu	37	chr6	29797816	29797816	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggaagcaccatccacaCtcatgggcctacccagcctg	9	16	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29797816	A	A	29797816	1	1	211	0	1	0	0	0	0	0	0	0	7279	580	20	3		3	HLA-G	6	29797816	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1996	29797816	141317251	217	164887											
PPT2	9374	broad.mit.edu	37	chr6	32130715	32130715	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgagacctgcattgaaccTtggctctcctgaggatatat	9	9	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32130715	G	G	32130715	2	3	211	1	0	0	0	0	0	0	0	1	12513	1596	56	5		5	PPT2	6	32130715	Silent	SNP	T	TCGA-73-4677-01A-01D-1265-08	2332899	32130715	138984352	218	164888											
NOTCH4	4855	broad.mit.edu	37	chr6	32178542	32178542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcacctggcagagatacCcactgggctgggccatgcag	12	14	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32178542	A	A	32178542	3	1	211	1	0	0	0	0	1	0	0	0	10646	623	22	2	3211	2	NOTCH4	6	32178542	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	47827	32178542	138936525	219	164889											
SYNGAP1	8831	broad.mit.edu	37	chr6	33406232	33406232	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccatgtctgaggtagacCggttcatggaacgggagcac	15	9	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33406232	T	T	33406232	3	4	211	1	0	0	0	0	1	0	0	0	15566	643	23	4	1457	4	SYNGAP1	6	33406232	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1227690	33406232	137708835	220	164890											
CRIP3	401262	broad.mit.edu	37	chr6	43275371	43275371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttgccttgggggaggcCagtccttggcctgggagggc	17	10	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43275371	A	A	43275371	3	1	211	1	0	0	0	0	1	0	0	0	3908	594	21	2	327	2	CRIP3	6	43275371	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	9869139	43275371	127839696	221	164891											
TFAP2B	7021	broad.mit.edu	37	chr6	50791330	50791330	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acccctactccctgaacccaCtgcaccagccccagcaacat	4	21	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50791330	T	T	50791330	2	4	211	1	0	0	0	0	0	0	0	1	15911	564	20	4		4	TFAP2B	6	50791330	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	7515959	50791330	120323737	222	164892											
TTK	7272	broad.mit.edu	37	chr6	80718252	80718252	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattttaagtaaaggataaCttattacaacttacttccta	3	6	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80718252	T	T	80718252	1	4	211	0	1	0	0	0	0	0	0	0	16846	580	20	4		4	TTK	6	80718252	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	29926922	80718252	90396815	223	164893											
ARMC2	84071	broad.mit.edu	37	chr6	109249475	109249475	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtagccttacaaaaatgCtaatgcttagatttggggtt	10	5	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109249475	T	T	109249475	1	4	211	0	1	0	0	0	0	0	0	0	955	812	28	4		4	ARMC2	6	109249475	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	28531223	109249475	61865592	224	164894											
ROS1	6098	broad.mit.edu	37	chr6	117609614	117609615	+	3'UTR	DEL	GA	-	-													tctttcagtaactactgaatGagagtgtttatctcaactct							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117609615	-	-	117609614	6	5	211	0	1	1	0	1	0	0	0	0	13642	1305	45	0		0	ROS1	6	117609614	3'UTR	DEL	GA	TCGA-73-4677-01A-01D-1265-08	8360139	117609614	53505453	225	164895											
SLC35F1	222553	broad.mit.edu	37	chr6	118606341	118606341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccttctctttactcttcCcccaggactgctctacgttg	6	16	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118606341	A	A	118606341	1	1	211	0	1	0	0	0	0	0	0	0	14702	638	22	2		2	SLC35F1	6	118606341	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	996727	118606341	52508726	226	164896											
PTPRK	5796	broad.mit.edu	37	chr6	128388674	128388674	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctcaccttctccacaCtgctcatcgcctggaaatag	8	14	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128388674	A	A	128388674	3	1	211	1	0	0	0	0	1	0	0	0	12913	565	20	3	2273	3	PTPRK	6	128388674	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	9782333	128388674	42726393	227	164897											
ENPP1	5167	broad.mit.edu	37	chr6	132148042	132148042	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttccttcagattcttcagGtgaaatacccagcatgggat	10	9	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132148042	T	T	132148042	1	4	211	0	1	0	0	0	0	0	0	0	5171	1276	44	3		3	ENPP1	6	132148042	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3759368	132148042	38967025	228	164898											
VNN2	8875	broad.mit.edu	37	chr6	133073695	133073695	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaattcaatagctgtcaaaAggggcaaaacgttcatccaa	9	8	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133073695	G	G	133073695	3	3	211	1	0	0	0	0	1	0	0	0	17310	72	3	5	847	5	VNN2	6	133073695	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	925653	133073695	38041372	229	164899											
IL20RA	53832	broad.mit.edu	37	chr6	137323091	137323091	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtgtggacacctcctcCtgcaaactgagctcctgctc	8	16	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137323091	T	T	137323091	2	4	211	1	0	0	0	0	0	0	0	1	7738	680	24	4		4	IL20RA	6	137323091	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	4249396	137323091	33791976	230	164900											
OLIG3	167826	broad.mit.edu	37	chr6	137814889	137814889	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcctcttcatctcctccaggGagctggtgagcatgaggatg	13	11	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137814889	C	C	137814889	3	2	211	1	0	0	0	0	1	0	0	0	10956	1174	41	4	403	4	OLIG3	6	137814889	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	491798	137814889	33300178	231	164901											
SNX9	51429	broad.mit.edu	37	chr6	158363843	158363843	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcagaaaagctgaggcaGgccctcagccgctttccagt	11	12	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158363843	T	T	158363843	3	4	211	1	0	0	0	0	1	0	0	0	15023	991	35	2	1831	2	SNX9	6	158363843	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	20548954	158363843	12751224	232	164902											
WTAP	9589	broad.mit.edu	37	chr6	160176455	160176455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtaaatcaactcagtgcgGggtatgaaagtgtagactct	11	7	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160176455	T	T	160176455	3	4	211	1	0	0	0	0	1	0	0	0	17536	1232	43	2	1033	2	WTAP	6	160176455	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1812612	160176455	10938612	233	164903											
PACRG	135138	broad.mit.edu	37	chr6	163378549	163378549	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattacaaggggctcgggaCagcctagttttgctagagct	12	9	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163378549	A	A	163378549	1	1	211	0	1	0	0	0	0	0	0	0	11464	493	17	3		3	PACRG	6	163378549	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3202094	163378549	7736518	234	164904											
KIF25	3834	broad.mit.edu	37	chr6	168434609	168434609	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagacgggcagcggaaagaGctataccatgctgggacgcc	14	11	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168434609	C	C	168434609	3	2	211	1	0	0	0	0	1	0	0	0	8363	971	34	4	225	4	KIF25	6	168434609	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	5056060	168434609	2680458	235	164905											
ADAP1	11033	broad.mit.edu	37	chr7	943704	943704	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacccaccttcctgcgccacCcgggcctgagggcccaccct	9	22	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	943704	A	A	943704	1	1	211	0	1	0	0	0	0	0	0	0	279	638	22	2		2	ADAP1	7	943704	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08		943704	158194959	236	164906											
TMEM195	392636	broad.mit.edu	37	chr7	15601460	15601460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacatcctgctgggcttctGggttcttcatttctgccctt	8	12	4	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15601460	T	T	15601460	3	4	211	1	0	0	0	0	1	0	0	0	16240	1348	47	2	1378	2	TMEM195	7	15601460	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	14657756	15601460	143537203	237	164907											
HDAC9	9734	broad.mit.edu	37	chr7	18767185	18767185	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacatttctttctactgtgCtcttttcttggcaacagcct	5	12	5	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18767185	A	A	18767185	1	1	211	0	1	0	0	0	0	0	0	0	7081	812	28	3		3	HDAC9	7	18767185	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3165725	18767185	140371478	238	164908											
HERPUD2	64224	broad.mit.edu	37	chr7	35733804	35733804	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacacttactggtttgctaGggtaaacgttagatagatgc	10	7	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35733804	A	A	35733804	3	1	211	1	0	0	0	0	1	0	0	0	7131	1000	35	4	1115	4	HERPUD2	7	35733804	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	16966619	35733804	123404859	239	164909											
INHBA	3624	broad.mit.edu	37	chr7	41729879	41729879	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agacagggaagacatgccagGtgctcttccgagcgtctact	12	11	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41729879	C	C	41729879	3	2	211	1	0	0	0	0	1	0	0	0	7811	1261	44	4	634	4	INHBA	7	41729879	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	5996075	41729879	117408784	240	164910											
GCK	2645	broad.mit.edu	37	chr7	44189441	44189441	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcattcaccattgccacCacatccatttcaaagtcctg	5	14	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44189441	T	T	44189441	2	4	211	1	0	0	0	0	0	0	0	1	6355	581	21	4		4	GCK	7	44189441	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	2459562	44189441	114949222	241	164911											
NPC1L1	29881	broad.mit.edu	37	chr7	44579150	44579150	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgaggaccagactgccCggcatctggcccaggtagaa	13	11	1	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44579150	T	T	44579150	2	4	211	1	0	0	0	0	0	0	0	1	10666	639	23	4		4	NPC1L1	7	44579150	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	389709	44579150	114559513	242	164912											
ADCY1	107	broad.mit.edu	37	chr7	45743342	45743342	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatcatcgccgactttgaCgaggtgaggctgtgcgtcgc	15	10	1	3	rs147203781		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45743342	T	T	45743342	2	4	211	1	0	0	0	0	0	0	0	1	292	535	19	4		4	ADCY1	7	45743342	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	1164192	45743342	113395321	243	164913											
SEC61G	23480	broad.mit.edu	37	chr7	54827006	54827006	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagtgcgcaagcgcagcgcGacgtgcgcccggccacgctt	14	16	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54827006	T	T	54827006	1	4	211	0	1	0	0	0	0	0	0	0	14116	1073	37	3		3	SEC61G	7	54827006	5'Flank	SNP	G	TCGA-73-4677-01A-01D-1265-08	9083664	54827006	104311657	244	164914											
LANCL2	55915	broad.mit.edu	37	chr7	55467749	55467749	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtatgccttactgtacctGaacacagagataggtccagg	10	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55467749	C	C	55467749	2	2	211	1	0	0	0	0	0	0	0	1	8693	1277	45	4		4	LANCL2	7	55467749	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	640743	55467749	103670914	245	164915											
PSPH	5723	broad.mit.edu	37	chr7	56169596	56169596	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagaagaatgctagcttcgTatactcaataaaacagaagc	7	7	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56169596	A	A	56169596	1	1	211	0	1	0	0	0	0	0	0	0	12823	1653	57	5		5	PSPH	7	56169596	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	701847	56169596	102969067	246	164916											
FKBP6	8468	broad.mit.edu	37	chr7	72755414	72755415	+	Intron	DNP	TG	AT	AT													tgcaggagcatgaagagagaTgggtggggttgtgactctgg							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	72755415	AT	AT	72755414	1	1	211	0	1	0	0	0	0	0	0	0	5969	1479	51	5		5	FKBP6	7	72755414	Intron	DNP	TG	TCGA-73-4677-01A-01D-1265-08	16585818	72755414	86383249	247	164917											
FKBP6	8468	broad.mit.edu	37	chr7	72756838	72756838	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actatgtggataaagagaaaGaaatgtggcaccgcatgttc	11	6	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72756838	T	T	72756838	4	4	211	1	0	0	0	0	0	1	0	0	5969	943	33	3	1001	3	FKBP6	7	72756838	Nonsense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1424	72756838	86381825	248	164918											
CACNA2D1	781	broad.mit.edu	37	chr7	81579632	81579632	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattttatagctgaccctacGttactgtaattgagggcagg	11	7	0	2	rs148861982	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81579632	A	A	81579632	1	1	211	0	1	0	0	0	0	0	0	0	2574	1160	40	4		4	CACNA2D1	7	81579632	3'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	8822794	81579632	77559031	249	164919											
GTPBP10	85865	broad.mit.edu	37	chr7	90003668	90003668	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacagtgatttcaaacaGgtaggtatttttaaagtaaa	8	3	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90003668	T	T	90003668	3	4	211	1	0	0	0	0	1	0	0	0	6944	1014	35	2	613	2	GTPBP10	7	90003668	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	8424036	90003668	69134995	250	164920											
PSMC2	5701	broad.mit.edu	37	chr7	102989095	102989095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccgcgaaaattcggccaGggttctcgctcttgtcgcgt	11	14	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102989095	T	T	102989095	1	4	211	0	1	0	0	0	0	0	0	0	12792	1015	35	2		2	PSMC2	7	102989095	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	12985427	102989095	56149568	251	164921											
LAMB1	3912	broad.mit.edu	37	chr7	107605017	107605017	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggccccaagttggcttcctCcgcttcatagaggtagtgat	11	11	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107605017	G	G	107605017	3	3	211	1	0	0	0	0	1	0	0	0	8682	864	30	4	3766	4	LAMB1	7	107605017	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4615922	107605017	51533646	252	164922											
LAMB4	22798	broad.mit.edu	37	chr7	107708514	107708514	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttgagcacctgtcacagCagcgcccgaccacaagaggt	11	14	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107708514	T	T	107708514	3	4	211	1	0	0	0	0	1	0	0	0	8685	710	25	4	2956	4	LAMB4	7	107708514	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	103497	107708514	51430149	253	164923											
NRCAM	4897	broad.mit.edu	37	chr7	107800925	107800925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgcaatatccacctgcCggcttgccatcgctggaaaa	10	12	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107800925	A	A	107800925	3	1	211	1	0	0	0	0	1	0	0	0	10739	652	23	1	477	1	NRCAM	7	107800925	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	92411	107800925	51337738	254	164924											
NRCAM	4897	broad.mit.edu	37	chr7	107820585	107820585	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcttccagaatatactttGatcagtagcccttctgtcag	8	10	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107820585	T	T	107820585	1	4	211	0	1	0	0	0	0	0	0	0	10739	1305	45	3		3	NRCAM	7	107820585	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	19660	107820585	51318078	255	164925											
FOXP2	93986	broad.mit.edu	37	chr7	114271723	114271723	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactcatctccattccaccTggccaggcagcacttcctgt	8	16	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114271723	A	A	114271723	2	1	211	1	0	0	0	0	0	0	0	1	6087	1567	55	5		5	FOXP2	7	114271723	Silent	SNP	T	TCGA-73-4677-01A-01D-1265-08	6451138	114271723	44866940	256	164926											
TAS2R16	50833	broad.mit.edu	37	chr7	122635727	122635727	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcctggacaaagactctgAatctctgtaccaatttccag	6	12	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122635727	T	T	122635727	1	4	211	0	1	0	0	0	0	0	0	0	15688	261	9	5		5	TAS2R16	7	122635727	5'UTR	SNP	A	TCGA-73-4677-01A-01D-1265-08	8364004	122635727	36502936	257	164927											
LMOD2	442721	broad.mit.edu	37	chr7	123302395	123302395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctggccaacacgcatgCcgacgacagtgcagccatgg	12	14	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123302395	A	A	123302395	3	1	211	1	0	0	0	0	1	0	0	0	8931	739	26	3	761	3	LMOD2	7	123302395	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	666668	123302395	35836268	258	164928											
NRF1	4899	broad.mit.edu	37	chr7	129348982	129348982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggggaaaaccaggctgggGgaaagaaagctgcaagccca	15	9	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129348982	T	T	129348982	3	4	211	1	0	0	0	0	1	0	0	0	10741	1232	43	2	692	2	NRF1	7	129348982	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	6046587	129348982	29789681	259	164929											
CPA1	1357	broad.mit.edu	37	chr7	130025024	130025024	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacccctgctcggagacttaCcacggcaagtttgccaattc	8	14	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130025024	G	G	130025024	4	3	211	1	0	0	0	0	0	1	0	0	3821	518	18	4	855	4	CPA1	7	130025024	Nonsense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	676042	130025024	29113639	260	164930											
PLXNA4	91584	broad.mit.edu	37	chr7	131831381	131831381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaggtgccacatcttgactCcactctccaggtcaggagtg	10	13	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131831381	A	A	131831381	3	1	211	1	0	0	0	0	1	0	0	0	12217	855	30	3	761	3	PLXNA4	7	131831381	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1806357	131831381	27307282	261	164931											
ZC3HAV1	56829	broad.mit.edu	37	chr7	138739811	138739811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaaaatgctaggattaCagggctgagccactgcaccc	9	14	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138739811	A	A	138739811	1	1	211	0	1	0	0	0	0	0	0	0	17701	493	17	3		3	ZC3HAV1	7	138739811	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	6908430	138739811	20398852	262	164932											
TRPV5	56302	broad.mit.edu	37	chr7	142612698	142612698	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caacgatgctcaccagctccCccaccagcctgatgatatct	6	17	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142612698	T	T	142612698	3	4	211	1	0	0	0	0	1	0	0	0	16724	623	22	4	1054	4	TRPV5	7	142612698	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	3872887	142612698	16525965	263	164933											
TAS2R39	259285	broad.mit.edu	37	chr7	142881280	142881280	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgaccccagcatggaggctCacatgggggccatcaaagct	12	13	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142881280	T	T	142881280	3	4	211	1	0	0	0	0	1	0	0	0	15695	826	29	4	771	4	TAS2R39	7	142881280	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	268582	142881280	16257383	264	164934											
CNTNAP2	26047	broad.mit.edu	37	chr7	146818081	146818081	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtacgcaggaagcaaccaGcttggccccatatatggcca	11	12	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146818081	C	C	146818081	3	2	211	1	0	0	0	0	1	0	0	0	3679	962	34	4	787	4	CNTNAP2	7	146818081	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3936801	146818081	12320582	265	164935											
ZNF862	643641	broad.mit.edu	37	chr7	149545230	149545230	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccccatctgggcagcccgGttccggagcatcagagaccc	12	16	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149545230	T	T	149545230	2	4	211	1	0	0	0	0	0	0	0	1	18324	1248	44	3		3	ZNF862	7	149545230	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	2727149	149545230	9593433	266	164936											
ABP1	26	broad.mit.edu	37	chr7	150554475	150554475	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccgcttggtccagccccAcggccctcgcttcaggctgg	11	20	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150554475	G	G	150554475	3	3	211	1	0	0	0	0	1	0	0	0	98	159	6	5	919	5	ABP1	7	150554475	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	1009245	150554475	8584188	267	164937											
ABCF2	10061	broad.mit.edu	37	chr7	150918751	150918751	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaatgggagacgaggacCaagatgcgcttaaaactgta	14	6	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150918751	A	A	150918751	3	1	211	1	0	0	0	0	1	0	0	0	66	593	21	2	1114	2	ABCF2	7	150918751	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	364276	150918751	8219912	268	164938											
NCAPG2	54892	broad.mit.edu	37	chr7	158468325	158468325	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atccctgtggaacggaccatCgggtaaggatcttctaaaag	11	9	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158468325	T	T	158468325	2	4	211	1	0	0	0	0	0	0	0	1	10303	871	31	4		4	NCAPG2	7	158468325	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	7549574	158468325	670338	269	164939											
CSMD1	64478	broad.mit.edu	37	chr8	3038645	3038645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttacttttgtattccagGtggaaaccagcagctgccac	8	12	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3038645	T	T	3038645	3	4	211	1	0	0	0	0	1	0	0	0	3978	1252	44	3	5118	3	CSMD1	8	3038645	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08		3038645	143325377	270	164940											
SGCZ	137868	broad.mit.edu	37	chr8	14167018	14167018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctaattgtgataagagaGcagtgtggactactgaatgt	13	4	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14167018	T	T	14167018	1	4	211	0	1	0	0	0	0	0	0	0	14317	986	34	3		3	SGCZ	8	14167018	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	11128373	14167018	132197004	271	164941											
TNFRSF10B	8795	broad.mit.edu	37	chr8	22880394	22880394	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccgctgcctcagctttAgccacctttatctcattgtc	7	15	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22880394	G	G	22880394	2	3	211	1	0	0	0	0	0	0	0	1	16404	407	15	5		5	TNFRSF10B	8	22880394	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	8713376	22880394	123483628	272	164942											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24249805	24249805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcaaacacctgaattaaCgctccatgaaatagtttgtc	6	9	0	2	rs61731546	byFrequency;by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24249805	A	A	24249805	3	1	211	1	0	0	0	0	1	0	0	0	254	536	19	3	125	3	ADAMDEC1	8	24249805	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1369411	24249805	122114217	273	164943											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37735015	37735015	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataaactggatgtcaacctcAatttctcctcgctccttgtc	5	13	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37735015	T	T	37735015	2	4	211	1	0	0	0	0	0	0	0	1	13001	126	5	5		5	RAB11FIP1	8	37735015	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	13485210	37735015	108629007	274	164944											
ADAM18	8749	broad.mit.edu	37	chr8	39564357	39564357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttccctggacatagacctCcagattgtaaattccagttt	7	11	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39564357	A	A	39564357	3	1	211	1	0	0	0	0	1	0	0	0	239	855	30	3	2021	3	ADAM18	8	39564357	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1829342	39564357	106799665	275	164945											
CHRNB3	1142	broad.mit.edu	37	chr8	42552877	42552877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggataacctttaaaatgtGgcccaaatgagtaattctgt	8	6	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42552877	T	T	42552877	1	4	211	0	1	0	0	0	0	0	0	0	3423	1363	47	2		2	CHRNB3	8	42552877	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	2988520	42552877	103811145	276	164946											
PRKDC	5591	broad.mit.edu	37	chr8	48701799	48701799	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgatccaacttacttttaatCctatttaaaaaaatttacaa	1	7	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48701799	A	A	48701799	3	1	211	1	0	0	0	0	1	0	0	0	12627	869	30	3	1763	3	PRKDC	8	48701799	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	6148922	48701799	97662223	277	164947											
ST18	9705	broad.mit.edu	37	chr8	53079524	53079524	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggatcgggcacttggtctcCctcttttcaggccttggtga	13	11	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53079524	T	T	53079524	2	4	211	1	0	0	0	0	0	0	0	1	15330	622	22	4		4	ST18	8	53079524	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	4377725	53079524	93284498	278	164948											
RP1	6101	broad.mit.edu	37	chr8	55539921	55539921	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccaacaaatcttcagaaaCacttgcattgttggagattc	6	9	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55539921	A	A	55539921	3	1	211	1	0	0	0	0	1	0	0	0	13643	478	17	3	3489	3	RP1	8	55539921	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2460397	55539921	90824101	279	164949											
KCNB2	9312	broad.mit.edu	37	chr8	73480430	73480430	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aatgaacgaagaactgaggcGagaggcagagactatgcgag	15	6	0	5			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73480430	A	A	73480430	3	1	211	1	0	0	0	0	1	0	0	0	8083	1058	37	4	463	4	KCNB2	8	73480430	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	17940509	73480430	72883592	280	164950											
ZFHX4	79776	broad.mit.edu	37	chr8	77618080	77618080	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggagacgaagacagttcagCcactcctcaccagcatggct	11	13	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77618080	G	G	77618080	3	3	211	1	0	0	0	0	1	0	0	0	17761	739	26	4	1759	4	ZFHX4	8	77618080	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4137650	77618080	68745942	281	164951											
ZFHX4	79776	broad.mit.edu	37	chr8	77776737	77776737	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taattctttggaagtgaaggCtaagcctgcttctggcctag	11	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77776737	T	T	77776737	3	4	211	1	0	0	0	0	1	0	0	0	17761	797	28	4	10825	4	ZFHX4	8	77776737	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	158657	77776737	68587285	282	164952											
SLC10A5	347051	broad.mit.edu	37	chr8	82606934	82606934	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttctccttcttcatcagTcaccagatttatggtaaagt	6	9	5	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82606934	C	C	82606934	3	2	211	1	0	0	0	0	1	0	0	0	14490	1667	58	5	1044	5	SLC10A5	8	82606934	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	4830197	82606934	63757088	283	164953											
WWP1	11059	broad.mit.edu	37	chr8	87414505	87414505	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtatccatccatgcctacActtccctttttgtgtagtct	5	12	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87414505	G	G	87414505	1	3	211	0	1	0	0	0	0	0	0	0	17542	174	6	5		5	WWP1	8	87414505	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	4807571	87414505	58949517	284	164954											
MMP16	4325	broad.mit.edu	37	chr8	89086945	89086945	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatccatccatcaccctgttGtttctcactcgccaaaacca	3	16	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89086945	T	T	89086945	3	4	211	1	0	0	0	0	1	0	0	0	9748	1368	48	3	885	3	MMP16	8	89086945	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1672440	89086945	57277077	285	164955											
RAD54B	25788	broad.mit.edu	37	chr8	95390503	95390503	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaaatttttaagttctTctactgaaaactgaatatgt	5	5	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95390503	C	C	95390503	3	2	211	1	0	0	0	0	1	0	0	0	13100	1783	62	5	320	5	RAD54B	8	95390503	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	6303558	95390503	50973519	286	164956											
RGS22	26166	broad.mit.edu	37	chr8	101008819	101008819	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaggcttgaaatcatttaCtaattaagtagctaaaaaaa	5	4	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101008819	T	T	101008819	1	4	211	0	1	0	0	0	0	0	0	0	13414	580	20	4		4	RGS22	8	101008819	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5618316	101008819	45355203	287	164957											
CSMD3	114788	broad.mit.edu	37	chr8	113421166	113421166	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgaatgggatcctgagaGggaagataacagagaagatt	13	5	0	5			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113421166	A	A	113421166	3	1	211	1	0	0	0	0	1	0	0	0	3980	1000	35	4	5788	4	CSMD3	8	113421166	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	12412347	113421166	32942856	288	164958											
CSMD3	114788	broad.mit.edu	37	chr8	113484912	113484912	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaacagtgccttctgaaCctgttgaacgacttccacag	8	11	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113484912	A	A	113484912	3	1	211	1	0	0	0	0	1	0	0	0	3980	507	18	3	5980	3	CSMD3	8	113484912	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	63746	113484912	32879110	289	164959											
SLC30A8	169026	broad.mit.edu	37	chr8	118184655	118184656	+	Intron	DEL	GA	-	-													gagcaaacgtggcttcctctGagtgccctgcctctgcccca							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	118184656	-	-	118184655	6	5	211	0	1	1	0	1	0	0	0	0	14675	1305	45	0		0	SLC30A8	8	118184655	Intron	DEL	GA	TCGA-73-4677-01A-01D-1265-08	4699743	118184655	28179367	290	164960											
ADCY8	114	broad.mit.edu	37	chr8	131833668	131833669	+	Splice_Site	DNP	TG	CT	CT													cttggtccccaggaaatctcTgttggaagaaaaaaggaact							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	131833669	CT	CT	131833668	5	2	211	1	0	0	0	0	0	0	1	0	300	1594	55	5	1105	5	ADCY8	8	131833668	Splice_Site	DNP	TG	TCGA-73-4677-01A-01D-1265-08	13649013	131833668	14530354	291	164961											
OC90	729330	broad.mit.edu	37	chr8	133045310	133045310	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagtggtctcctcaggatCattttcaacagatgacactg	8	10	5	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133045310	G	G	133045310	3	3	211	1	0	0	0	0	1	0	0	0	10909	826	29	4	614	4	OC90	8	133045310	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1211642	133045310	13318712	292	164962											
PHF20L1	51105	broad.mit.edu	37	chr8	133858080	133858080	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagccaccagatcctcttgCaagattgccccaacttaaac	7	14	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133858080	T	T	133858080	3	4	211	1	0	0	0	0	1	0	0	0	11927	710	25	4	3140	4	PHF20L1	8	133858080	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	812770	133858080	12505942	293	164963											
LRRC14	9684	broad.mit.edu	37	chr8	145749479	145749479	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcccagacagagacgctttCcgaggaagaggtacctgtga	14	10	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145749479	T	T	145749479	1	4	211	0	1	0	0	0	0	0	0	0	9055	870	30	4		4	LRRC14	8	145749479	3'UTR	SNP	C	TCGA-73-4677-01A-01D-1265-08	11891399	145749479	614543	294	164964											
KDM4C	23081	broad.mit.edu	37	chr9	6834953	6834953	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccacagtgtgcccatctgcGagggatatgccctcccccac	9	18	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6834953	T	T	6834953	1	4	211	0	1	0	0	0	0	0	0	0	8200	1073	37	3		3	KDM4C	9	6834953	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08		6834953	134378478	295	164965											
PTPRD	5789	broad.mit.edu	37	chr9	8339047	8339047	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagtattggtgacatttctCctaaaaggagagaagattaa	9	6	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8339047	A	A	8339047	4	1	211	1	0	0	0	0	0	1	0	0	12907	869	30	3	500	3	PTPRD	9	8339047	Nonsense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1504094	8339047	132874384	296	164966											
HAUS6	54801	broad.mit.edu	37	chr9	19082957	19082957	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctaaagcatattggttaaCaagactaaggaccgaactaa	7	7	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19082957	A	A	19082957	3	1	211	1	0	0	0	0	1	0	0	0	7036	478	17	3	2123	3	HAUS6	9	19082957	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	10743910	19082957	122130474	297	164967											
AQP7	364	broad.mit.edu	37	chr9	33386950	33386950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttgcccggtccggcagGgcctgggctcactcaccaga	14	15	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33386950	T	T	33386950	1	4	211	0	1	0	0	0	0	0	0	0	833	1247	43	2		2	AQP7	9	33386950	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	14303993	33386950	107826481	298	164968											
DNAI1	27019	broad.mit.edu	37	chr9	34500817	34500817	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgacaaagccaagcgcctGtccgtcactgccctctgctg	9	15	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34500817	T	T	34500817	2	4	211	1	0	0	0	0	0	0	0	1	4649	1364	48	3		3	DNAI1	9	34500817	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	1113867	34500817	106712614	299	164969											
PIGO	84720	broad.mit.edu	37	chr9	35092983	35092983	+	Intron	DEL	C	-	-													ttcattatgcttctttcatgCccaccctagctctgtcacct							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35092983	-	-	35092983	6	5	211	0	1	1	0	1	0	0	0	0	11989	754	26	0		0	PIGO	9	35092983	Intron	DEL	C	TCGA-73-4677-01A-01D-1265-08	592166	35092983	106120448	300	164970											
MELK	9833	broad.mit.edu	37	chr9	36665487	36665488	+	Frame_Shift_Del	DEL	TA	-	-													gtaaagaatgaagagtacttTatgtttcctgagccaaagac							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36665488	-	-	36665487	7	5	211	1	0	1	0	1	0	0	0	0	9563	1751	61	0	1367	0	MELK	9	36665487	Frame_Shift_Del	DEL	TA	TCGA-73-4677-01A-01D-1265-08	1572504	36665487	104547944	301	164971											
FRMPD1	22844	broad.mit.edu	37	chr9	37729897	37729897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggcatgggctgggctgGctgcatacctcagccagaac	16	11	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37729897	T	T	37729897	1	4	211	0	1	0	0	0	0	0	0	0	6117	1218	42	3		3	FRMPD1	9	37729897	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1064410	37729897	103483534	302	164972											
FRMPD1	22844	broad.mit.edu	37	chr9	37732276	37732276	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgtctgcttttgtttcccAtctgctctatttaatctctt	4	10	4	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37732276	T	T	37732276	1	4	211	0	1	0	0	0	0	0	0	0	6117	232	8	5		5	FRMPD1	9	37732276	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	2379	37732276	103481155	303	164973											
PGM5	5239	broad.mit.edu	37	chr9	71114208	71114208	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagttcctccagtggtgtGcgggccaccctcagactgta	11	14	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71114208	A	A	71114208	2	1	211	1	0	0	0	0	0	0	0	1	11896	1306	46	4		4	PGM5	9	71114208	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	33381932	71114208	70099223	304	164974											
TRPM3	80036	broad.mit.edu	37	chr9	73457898	73457898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaggagaagtcatggaaaGcgacagcactcaggacttac	11	9	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73457898	T	T	73457898	1	4	211	0	1	0	0	0	0	0	0	0	16712	986	34	3		3	TRPM3	9	73457898	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	2343690	73457898	67755533	305	164975											
GDA	9615	broad.mit.edu	37	chr9	74863360	74863360	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatagtaccttgttcttGggatgactatccctttctgt	7	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74863360	T	T	74863360	1	4	211	0	1	0	0	0	0	0	0	0	6369	1363	47	2		2	GDA	9	74863360	3'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	1405462	74863360	66350071	306	164976											
PSAT1	29968	broad.mit.edu	37	chr9	80943239	80943239	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggccaacccagctgttaTaaggatgtgccttcttcctg	10	11	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80943239	G	G	80943239	1	3	211	0	1	0	0	0	0	0	0	0	12750	1421	49	5		5	PSAT1	9	80943239	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	6079879	80943239	60270192	307	164977											
DAPK1	1612	broad.mit.edu	37	chr9	90322342	90322342	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagggggtgatgtagcccAtccttccctttggagatgct	13	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90322342	T	T	90322342	1	4	211	0	1	0	0	0	0	0	0	0	4268	232	8	5		5	DAPK1	9	90322342	3'UTR	SNP	A	TCGA-73-4677-01A-01D-1265-08	9379103	90322342	50891089	308	164978											
SPTLC1	10558	broad.mit.edu	37	chr9	94877733	94877733	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagtgtcgttatcacctcCgcagagggcggggcggcgga	16	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94877733	T	T	94877733	1	4	211	0	1	0	0	0	0	0	0	0	15241	667	23	4		4	SPTLC1	9	94877733	5'Flank	SNP	C	TCGA-73-4677-01A-01D-1265-08	4555391	94877733	46335698	309	164979											
FGD3	89846	broad.mit.edu	37	chr9	95797636	95797636	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggacggccggctgccccGcaccatccctctccccagct	10	21	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95797636	T	T	95797636	3	4	211	1	0	0	0	0	1	0	0	0	5891	1087	38	3	2005	3	FGD3	9	95797636	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	919903	95797636	45415795	310	164980											
C9orf30	91283	broad.mit.edu	37	chr9	103213106	103213106	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatccagcagatagagcgagAgtgtgagatggcagaggagg	17	5	0	5			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103213106	G	G	103213106	3	3	211	1	0	0	0	0	1	0	0	0	2504	304	11	5	692	5	C9orf30	9	103213106	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	7415470	103213106	38000325	311	164981											
ALDOB	229	broad.mit.edu	37	chr9	104192004	104192004	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggagtttgcctaggacaAagcagaagtgaggtgtgaat	14	5	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104192004	T	T	104192004	1	4	211	0	1	0	0	0	0	0	0	0	508	29	1	5		5	ALDOB	9	104192004	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	978898	104192004	37021427	312	164982											
OR13D1	286365	broad.mit.edu	37	chr9	107457008	107457008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacctctcattcttggaCatctgttacacatcctcatc	5	13	4	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107457008	A	A	107457008	3	1	211	1	0	0	0	0	1	0	0	0	11034	477	17	3	308	3	OR13D1	9	107457008	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	3265004	107457008	33756423	313	164983											
SVEP1	79987	broad.mit.edu	37	chr9	113169069	113169069	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaggaatctctgcatcCcagttgccatctgactgaca	9	12	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113169069	A	A	113169069	3	1	211	1	0	0	0	0	1	0	0	0	15538	624	22	2	1948	2	SVEP1	9	113169069	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	5712061	113169069	28044362	314	164984											
MUSK	4593	broad.mit.edu	37	chr9	113547037	113547037	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttactgattgcttaaataCaaaaaattgcttcttaaagg	5	5	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113547037	A	A	113547037	1	1	211	0	1	0	0	0	0	0	0	0	10083	493	17	3		3	MUSK	9	113547037	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	377968	113547037	27666394	315	164985											
TLR4	7099	broad.mit.edu	37	chr9	120475067	120475067	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaactttatccaaccaGgtgcatttaaagaaattagg	7	7	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120475067	A	A	120475067	3	1	211	1	0	0	0	0	1	0	0	0	16076	1000	35	4	671	4	TLR4	9	120475067	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	6928030	120475067	20738364	316	164986											
GARNL3	84253	broad.mit.edu	37	chr9	130147292	130147292	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgggaggtgacactcCcgttcccttgcagtctgtgc	13	13	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130147292	A	A	130147292	1	1	211	0	1	0	0	0	0	0	0	0	6303	638	22	2		2	GARNL3	9	130147292	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	9672225	130147292	11066139	317	164987											
TTF1	7270	broad.mit.edu	37	chr9	135278199	135278199	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatttcaaatctgcttgattCtccttccattttattcctat	3	10	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135278199	A	A	135278199	4	1	211	1	0	0	0	0	0	1	0	0	16844	922	32	3	2747	3	TTF1	9	135278199	Nonsense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	5130907	135278199	5935232	318	164988											
FCN2	2220	broad.mit.edu	37	chr9	137776490	137776490	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccataccatcacctcctGgggaggcccagaaaatggtg	11	13	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137776490	T	T	137776490	1	4	211	0	1	0	0	0	0	0	0	0	5849	1363	47	2		2	FCN2	9	137776490	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	2498291	137776490	3436941	319	164989											
C9orf173	441476	broad.mit.edu	37	chr9	140146898	140146898	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaactacagagggcggtgGccgcagggcatggcagactt	15	11	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140146898	A	A	140146898	3	1	211	1	0	0	0	0	1	0	0	0	2498	1203	42	4	427	4	C9orf173	9	140146898	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	2370408	140146898	1066533	320	164990											
CACNA1B	774	broad.mit.edu	37	chr9	140941316	140941316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaggggtggcgcgcccGgctggggggccttgtggtga	22	9	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140941316	T	T	140941316	1	4	211	0	1	0	0	0	0	0	0	0	2565	1131	39	1		1	CACNA1B	9	140941316	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	794418	140941316	272115	321	164991											
AKR1C2	1646	broad.mit.edu	37	chr10	5045924	5045924	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcctttgaactctcaacActaaaaatattattgttacc	3	10	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5045924	C	C	5045924	1	2	211	0	1	0	0	0	0	0	0	0	470	174	6	5		5	AKR1C2	10	5045924	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08		5045924	130488823	322	164992											
CAMK1D	57118	broad.mit.edu	37	chr10	12802848	12802848	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcaatctgaagatggattCatttttgcaataaagtttgg	8	5	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12802848	A	A	12802848	1	1	211	0	1	0	0	0	0	0	0	0	2623	841	29	3		3	CAMK1D	10	12802848	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	7756924	12802848	122731899	323	164993											
ACBD7	414149	broad.mit.edu	37	chr10	15059114	15059114	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttccttcccaacagtccCaggtactcacacctacgggg	7	16	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15059114	A	A	15059114	1	1	211	0	1	0	0	0	0	0	0	0	127	609	21	2		2	ACBD7	10	15059114	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2256266	15059114	120475633	324	164994											
TRDMT1	1787	broad.mit.edu	37	chr10	17201132	17201133	+	Intron	DNP	CC	AA	AA													ataatattcataataaaattCcaataataatacctgaccag							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	17201133	AA	AA	17201132	1	1	211	0	1	0	0	0	0	0	0	0	16591	870	30	3		3	TRDMT1	10	17201132	Intron	DNP	CC	TCGA-73-4677-01A-01D-1265-08	2142018	17201132	118333615	325	164995											
MLLT10	8028	broad.mit.edu	37	chr10	21914613	21914613	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttctttagtcttattcttCagaatggatccaacaaaagt	5	7	4	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21914613	T	T	21914613	1	4	211	0	1	0	0	0	0	0	0	0	9719	841	29	4		4	MLLT10	10	21914613	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	4713481	21914613	113620134	326	164996											
SPAG6	9576	broad.mit.edu	37	chr10	22675638	22675638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaatggcttgcacaagGgtcagtcacccatactcact	8	11	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22675638	T	T	22675638	1	4	211	0	1	0	0	0	0	0	0	0	15098	1247	43	2		2	SPAG6	10	22675638	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	761025	22675638	112859109	327	164997											
ARMC3	219681	broad.mit.edu	37	chr10	23287106	23287106	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagctgatggtattgatcCattaataaacctcctgtcta	7	8	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23287106	T	T	23287106	3	4	211	1	0	0	0	0	1	0	0	0	956	594	21	4	1243	4	ARMC3	10	23287106	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	611468	23287106	112247641	328	164998											
LYZL2	119180	broad.mit.edu	37	chr10	30915049	30915049	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctgagcaggcgacgtGgcagtggttgttctccttca	12	12	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30915049	T	T	30915049	3	4	211	1	0	0	0	0	1	0	0	0	9220	1348	47	2	175	2	LYZL2	10	30915049	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	7627943	30915049	104619698	329	164999											
ANKRD30A	91074	broad.mit.edu	37	chr10	37422839	37422839	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagttatctctttgttatTttagcacagccctcatgctt	6	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37422839	A	A	37422839	1	1	211	0	1	0	0	0	0	0	0	0	658	1856	64	5		5	ANKRD30A	10	37422839	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	6507790	37422839	98111908	330	165000											
ANKRD30A	91074	broad.mit.edu	37	chr10	37454083	37454083	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaattcttgggatactgaGgtactgtgtgttgttgattt	12	3	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37454083	T	T	37454083	3	4	211	1	0	0	0	0	1	0	0	0	658	1014	35	2	1966	2	ANKRD30A	10	37454083	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	31244	37454083	98080664	331	165001											
ANKRD30A	91074	broad.mit.edu	37	chr10	37490274	37490274	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaagaaccatcttttatttAaaaggtcatttgaccaagta	6	6	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37490274	T	T	37490274	1	4	211	0	1	0	0	0	0	0	0	0	658	377	13	5		5	ANKRD30A	10	37490274	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	36191	37490274	98044473	332	165002											
RASGEF1A	221002	broad.mit.edu	37	chr10	43694488	43694488	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagcaggtagggtcaggGccgggggggtgggccatgca	22	8	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43694488	T	T	43694488	1	4	211	0	1	0	0	0	0	0	0	0	13177	1218	42	3		3	RASGEF1A	10	43694488	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	6204214	43694488	91840259	333	165003											
HNRNPF	3185	broad.mit.edu	37	chr10	43882166	43882166	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactggctctccaggccactGtaagtggcctgggcagcaga	14	12	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43882166	A	A	43882166	2	1	211	1	0	0	0	0	0	0	0	1	7332	1372	48	4		4	HNRNPF	10	43882166	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	187678	43882166	91652581	334	165004											
SYT15	83849	broad.mit.edu	37	chr10	46961994	46961994	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccgtggtgcggcagagCgcatgccagcgcttcaccag	15	14	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46961994	A	A	46961994	2	1	211	1	0	0	0	0	0	0	0	1	15590	755	27	3		3	SYT15	10	46961994	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	3079828	46961994	88572753	335	165005											
SYT15	83849	broad.mit.edu	37	chr10	46962097	46962097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggcccaccaccactcggCccagctgctggctctctgca	11	18	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46962097	A	A	46962097	3	1	211	1	0	0	0	0	1	0	0	0	15590	739	26	3	184	3	SYT15	10	46962097	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	103	46962097	88572650	336	165006											
RBP3	5949	broad.mit.edu	37	chr10	48386070	48386070	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggtcctactcagtgtcagGaggagcagccagttttagag	14	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48386070	T	T	48386070	1	4	211	0	1	0	0	0	0	0	0	0	13265	1189	41	3		3	RBP3	10	48386070	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1423973	48386070	87148677	337	165007											
CTNNA3	29119	broad.mit.edu	37	chr10	67726513	67726513	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggatctgggcactaaatatGaatcaaagataaaaatagat	8	4	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67726513	T	T	67726513	1	4	211	0	1	0	0	0	0	0	0	0	4048	1305	45	3		3	CTNNA3	10	67726513	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	19340443	67726513	67808234	338	165008											
ANKRD1	27063	broad.mit.edu	37	chr10	92680671	92680671	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagagttcccttgcattaCacctgaaagcaaagggcatt	8	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92680671	A	A	92680671	1	1	211	0	1	0	0	0	0	0	0	0	637	493	17	3		3	ANKRD1	10	92680671	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	24954158	92680671	42854076	339	165009											
HELLS	3070	broad.mit.edu	37	chr10	96342622	96342622	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgatgcaacaataccacGtttcattatcagattattac	4	8	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96342622	A	A	96342622	1	1	211	0	1	0	0	0	0	0	0	0	7113	1160	40	4		4	HELLS	10	96342622	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3661951	96342622	39192125	340	165010											
RRP12	23223	broad.mit.edu	37	chr10	99140713	99140713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccacggtcacaccaccCtgtgccccccaccagagaaa	9	18	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99140713	A	A	99140713	1	1	211	0	1	0	0	0	0	0	0	0	13797	696	24	2		2	RRP12	10	99140713	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2798091	99140713	36394034	341	165011											
PAX2	5076	broad.mit.edu	37	chr10	102569129	102569129	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaggcttctaaaaccaggGtgcttcctgaacaggggtgt	13	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102569129	A	A	102569129	1	1	211	0	1	0	0	0	0	0	0	0	11573	1276	44	4		4	PAX2	10	102569129	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3428416	102569129	32965618	342	165012											
SFXN2	118980	broad.mit.edu	37	chr10	104489099	104489099	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggccctttcctacttcaCagccacaaccactgctgtgg	8	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104489099	G	G	104489099	3	3	211	1	0	0	0	0	1	0	0	0	14308	478	17	4	469	4	SFXN2	10	104489099	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1919970	104489099	31045648	343	165013											
SORCS3	22986	broad.mit.edu	37	chr10	107012615	107012615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcttttcattcttccacCcaagaacctgacagagagga	8	11	2	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107012615	A	A	107012615	3	1	211	1	0	0	0	0	1	0	0	0	15046	623	22	2	3278	2	SORCS3	10	107012615	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2523516	107012615	28522132	344	165014											
ATRNL1	26033	broad.mit.edu	37	chr10	117024849	117024849	+	Intron	DEL	C	-	-													tttgaaaattatcattggtaCttaatggtattggattttat							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117024849	-	-	117024849	6	5	211	0	1	1	0	1	0	0	0	0	1211	580	20	0		0	ATRNL1	10	117024849	Intron	DEL	C	TCGA-73-4677-01A-01D-1265-08	10012234	117024849	18509898	345	165015											
KIAA1598	57698	broad.mit.edu	37	chr10	118671181	118671181	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcaaataaactggccaaaGatgaggctaattgtaaatgg	10	5	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118671181	A	A	118671181	1	1	211	0	1	0	0	0	0	0	0	0	8316	957	33	4		4	KIAA1598	10	118671181	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1646332	118671181	16863566	346	165016											
PRLHR	2834	broad.mit.edu	37	chr10	120353661	120353661	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcagatgaccacgctgaCggtcatattctggccatggg	12	11	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120353661	T	T	120353661	3	4	211	1	0	0	0	0	1	0	0	0	12636	536	19	4	20	4	PRLHR	10	120353661	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1682480	120353661	15181086	347	165017											
INPP5F	22876	broad.mit.edu	37	chr10	121551579	121551579	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcgtagagcagggtttGcacttgggaagaagtgatgg	16	6	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121551579	T	T	121551579	1	4	211	0	1	0	0	0	0	0	0	0	7828	1334	46	3		3	INPP5F	10	121551579	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1197918	121551579	13983168	348	165018											
DMBT1	1755	broad.mit.edu	37	chr10	124380532	124380532	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attccttaaatccttgacctCataatcagtatggatgaagg	7	8	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124380532	G	G	124380532	1	3	211	0	1	0	0	0	0	0	0	0	4617	841	29	4		4	DMBT1	10	124380532	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2828953	124380532	11154215	349	165019											
MKI67	4288	broad.mit.edu	37	chr10	129905763	129905763	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcttgctaccagttacActtgctgctgggtccagttt	9	12	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129905763	G	G	129905763	2	3	211	1	0	0	0	0	0	0	0	1	9691	156	6	5		5	MKI67	10	129905763	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	5525231	129905763	5628984	350	165020											
VENTX	27287	broad.mit.edu	37	chr10	135051638	135051638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggtcctcaaatctgcctGcgccggagaggaccatggcc	13	15	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135051638	A	A	135051638	3	1	211	1	0	0	0	0	1	0	0	0	17280	1319	46	4	222	4	VENTX	10	135051638	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	5145875	135051638	483109	351	165021											
C11orf35	256329	broad.mit.edu	37	chr11	558709	558709	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcaaggcctggatctccagTtctcgctgtctccacagcag	10	15	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	558709	G	G	558709	3	3	211	1	0	0	0	0	1	0	0	0	1650	1722	60	5	1736	5	C11orf35	11	558709	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08		558709	134447807	352	165022											
MUC6	4588	broad.mit.edu	37	chr11	1019490	1019490	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacggccgtggttggtctaGgtggttctgcagaggacagc	17	8	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1019490	T	T	1019490	3	4	211	1	0	0	0	0	1	0	0	0	10074	1000	35	2	3520	2	MUC6	11	1019490	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	460781	1019490	133987026	353	165023											
MUC5B	727897	broad.mit.edu	37	chr11	1156351	1156351	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctccggagagggtagaaggTgccctgggcccagtcagggt	17	10	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1156351	A	A	1156351	1	1	211	0	1	0	0	0	0	0	0	0	10073	1711	59	5		5	MUC5B	11	1156351	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	136861	1156351	133850165	354	165024											
MUC5B	727897	broad.mit.edu	37	chr11	1159475	1159475	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggccagcctcccacaggctCccccagcttggctgcatgtc	10	18	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1159475	A	A	1159475	1	1	211	0	1	0	0	0	0	0	0	0	10073	870	30	3		3	MUC5B	11	1159475	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3124	1159475	133847041	355	165025											
CARS	833	broad.mit.edu	37	chr11	3023561	3023561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagcttgtgaccacatgGcacagccttccccttggcca	10	14	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3023561	T	T	3023561	1	4	211	0	1	0	0	0	0	0	0	0	2683	1218	42	3		3	CARS	11	3023561	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1864086	3023561	131982955	356	165026											
ART5	116969	broad.mit.edu	37	chr11	3661436	3661436	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcgacgcttgtcctcccAggtctcctgggctgcctccc	9	20	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3661436	G	G	3661436	3	3	211	1	0	0	0	0	1	0	0	0	1004	188	7	5	664	5	ART5	11	3661436	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	637875	3661436	131345080	357	165027											
PGAP2	27315	broad.mit.edu	37	chr11	3845733	3845733	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccctggcagaggggtgctGgggttggggctggggcttgg	22	7	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3845733	C	C	3845733	1	2	211	0	1	0	0	0	0	0	0	0	11873	1363	47	4		4	PGAP2	11	3845733	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	184297	3845733	131160783	358	165028											
OR51G1	79324	broad.mit.edu	37	chr11	4944840	4944840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcacagatatgagagaCacaggtgttgagggctcgga	14	7	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4944840	A	A	4944840	3	1	211	1	0	0	0	0	1	0	0	0	11192	478	17	3	237	3	OR51G1	11	4944840	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1099107	4944840	130061676	359	165029											
OR52A5	390054	broad.mit.edu	37	chr11	5153632	5153632	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagatgcctaacattttggGaagaatgcaggtgttaagtg	13	4	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5153632	A	A	5153632	3	1	211	1	0	0	0	0	1	0	0	0	11204	1174	41	4	712	4	OR52A5	11	5153632	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	208792	5153632	129852884	360	165030											
OR51B2	79345	broad.mit.edu	37	chr11	5345219	5345219	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gattccacaacagaaagggaGtgaataaagtaagcctgtag	11	6	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5345219	C	C	5345219	3	2	211	1	0	0	0	0	1	0	0	0	11183	1020	36	4	633	4	OR51B2	11	5345219	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	191587	5345219	129661297	361	165031											
OR51Q1	390061	broad.mit.edu	37	chr11	5443901	5443901	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgctgctgtgttctggcGgttcttccctcccttttctt	8	12	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5443901	A	A	5443901	2	1	211	1	0	0	0	0	0	0	0	1	11198	1103	39	4		4	OR51Q1	11	5443901	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	98682	5443901	129562615	362	165032											
OLFML1	283298	broad.mit.edu	37	chr11	7531000	7531000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagcattggtttaccagCactccccctcaacttacatt	6	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7531000	A	A	7531000	3	1	211	1	0	0	0	0	1	0	0	0	10951	710	25	3	800	3	OLFML1	11	7531000	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2087099	7531000	127475516	363	165033											
TPH1	7166	broad.mit.edu	37	chr11	18044194	18044194	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atccttatatacaacatactCtagatacttgttatgaaagg	5	7	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18044194	A	A	18044194	1	1	211	0	1	0	0	0	0	0	0	0	16525	928	32	3		3	TPH1	11	18044194	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	10513194	18044194	116962322	364	165034											
MADD	8567	broad.mit.edu	37	chr11	47311393	47311393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaaggagctgatgaccaCagaagcggtgtgtggaccct	14	9	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47311393	A	A	47311393	1	1	211	0	1	0	0	0	0	0	0	0	9240	493	17	3		3	MADD	11	47311393	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	29267199	47311393	87695123	365	165035											
FOLH1	2346	broad.mit.edu	37	chr11	49214305	49214305	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatatgaagagaaggaaggCttctttttgtcatttttatt	8	4	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49214305	A	A	49214305	1	1	211	0	1	0	0	0	0	0	0	0	6037	812	28	3		3	FOLH1	11	49214305	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1902912	49214305	85792211	366	165036											
OR8H2	390151	broad.mit.edu	37	chr11	55872386	55872386	+	5'Flank	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggctggaatgcaatggtgcGatcccggctcactgcaacct	13	12	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55872386	T	T	55872386	1	4	211	0	1	0	0	0	0	0	0	0	11332	1073	37	3		3	OR8H2	11	55872386	5'Flank	SNP	G	TCGA-73-4677-01A-01D-1265-08	6658081	55872386	79134130	367	165037											
OR8J3	81168	broad.mit.edu	37	chr11	55904317	55904317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatttacatcattattcCtcaggctgtagatcaaggga	7	9	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55904317	A	A	55904317	3	1	211	1	0	0	0	0	1	0	0	0	11336	681	24	2	71	2	OR8J3	11	55904317	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	31931	55904317	79102199	368	165038											
OR5B3	441608	broad.mit.edu	37	chr11	58170161	58170161	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgccgactgcaatgaaatgaGaggcacaggtggacaaaggc	14	8	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58170161	T	T	58170161	3	4	211	1	0	0	0	0	1	0	0	0	11246	942	33	3	224	3	OR5B3	11	58170161	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	2265844	58170161	76836355	369	165039											
GLYATL2	219970	broad.mit.edu	37	chr11	58601981	58601981	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accccaaattgttcagtgccTgtaggcttttctcattatta	6	10	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58601981	C	C	58601981	3	2	211	1	0	0	0	0	1	0	0	0	6545	1580	55	5	82	5	GLYATL2	11	58601981	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	431820	58601981	76404535	370	165040											
MARK2	2011	broad.mit.edu	37	chr11	63665608	63665608	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttccctgcccggttttGgttttttgggaaaaacaaat	8	8	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63665608	T	T	63665608	1	4	211	0	1	0	0	0	0	0	0	0	9405	1363	47	2		2	MARK2	11	63665608	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	5063627	63665608	71340908	371	165041											
SF3B2	10992	broad.mit.edu	37	chr11	65827268	65827268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagctggtggctcggcccGatgtcgtggagatgcacgat	15	11	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65827268	T	T	65827268	3	4	211	1	0	0	0	0	1	0	0	0	14264	1058	37	3	1467	3	SF3B2	11	65827268	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	2161660	65827268	69179248	372	165042											
CPT1A	1374	broad.mit.edu	37	chr11	68582656	68582656	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagctaaagtctatgtgaCggtgtccccaagccttaagt	11	9	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68582656	T	T	68582656	1	4	211	0	1	0	0	0	0	0	0	0	3863	551	19	4		4	CPT1A	11	68582656	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2755388	68582656	66423860	373	165043											
INPPL1	3636	broad.mit.edu	37	chr11	71949145	71949145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaggcatgagtgcctgGctgcgggccatcggcttgga	18	10	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71949145	T	T	71949145	3	4	211	1	0	0	0	0	1	0	0	0	7831	1212	42	3	3718	3	INPPL1	11	71949145	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	3366489	71949145	63057371	374	165044											
SYTL2	54843	broad.mit.edu	37	chr11	85431871	85431871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttaagcttagatggggCatgaacagtgaggcgaactt	12	5	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85431871	A	A	85431871	1	1	211	0	1	0	0	0	0	0	0	0	15602	725	25	3		3	SYTL2	11	85431871	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	13482726	85431871	49574645	375	165045											
FOLH1B	219595	broad.mit.edu	37	chr11	89392961	89392961	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactttattaaagaatttccTttggcacaatggactaagca	7	7	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89392961	A	A	89392961	1	1	211	0	1	0	0	0	0	0	0	0	6038	1624	56	5		5	FOLH1B	11	89392961	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	3961090	89392961	45613555	376	165046											
FAT3	120114	broad.mit.edu	37	chr11	92531675	92531675	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggactccagtacaggtgcAatcagaacaattgccaacct	9	11	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92531675	T	T	92531675	2	4	211	1	0	0	0	0	0	0	0	1	5748	117	5	5		5	FAT3	11	92531675	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	3138714	92531675	42474841	377	165047											
CASP1	834	broad.mit.edu	37	chr11	104966937	104966937	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcctgaaagagaccataCtgctgattttggactatgtg	9	7	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104966937	A	A	104966937	1	1	211	0	1	0	0	0	0	0	0	0	2694	580	20	3		3	CASP1	11	104966937	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	12435262	104966937	30039579	378	165048											
ABCG4	64137	broad.mit.edu	37	chr11	119030878	119030878	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccttgggtggagtggagGtcttggctgctgtgcccctg	17	10	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119030878	T	T	119030878	1	4	211	0	1	0	0	0	0	0	0	0	70	1276	44	3		3	ABCG4	11	119030878	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	14063941	119030878	15975638	379	165049											
SC5DL	6309	broad.mit.edu	37	chr11	121174140	121174140	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttacaccatacgtgtatcCagccacatggccagaagatg	8	11	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121174140	T	T	121174140	3	4	211	1	0	0	0	0	1	0	0	0	13978	594	21	4	58	4	SC5DL	11	121174140	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2143262	121174140	13832376	380	165050											
OR8B8	26493	broad.mit.edu	37	chr11	124310257	124310257	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactgcaattatgtgggagCtgcaggtgctgaaggctttg	14	6	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124310257	A	A	124310257	3	1	211	1	0	0	0	0	1	0	0	0	11324	797	28	3	213	3	OR8B8	11	124310257	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	3136117	124310257	10696259	381	165051											
KCNJ5	3762	broad.mit.edu	37	chr11	128786413	128786413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctatgaggtggactacaaCaccttccatgatacctatga	7	10	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128786413	A	A	128786413	3	1	211	1	0	0	0	0	1	0	0	0	8124	477	17	3	1053	3	KCNJ5	11	128786413	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4476156	128786413	6220103	382	165052											
CCDC77	84318	broad.mit.edu	37	chr12	541000	541000	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacagaaaagctgagtaaaAtcttcttgatggattttgtt	8	5	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	541000	G	G	541000	1	3	211	0	1	0	0	0	0	0	0	0	2879	116	4	5		5	CCDC77	12	541000	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08		541000	133310895	383	165053											
EFCAB4B	84766	broad.mit.edu	37	chr12	3805981	3805981	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccttgccttcagcatcaCaggtctgaaagaactcctgt	8	13	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3805981	G	G	3805981	3	3	211	1	0	0	0	0	1	0	0	0	4977	478	17	4	2270	4	EFCAB4B	12	3805981	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	3264981	3805981	130045914	384	165054											
NCAPD2	9918	broad.mit.edu	37	chr12	6637493	6637493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggactcctcatctgtatgctCggtaagagacccctcacaac	8	14	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6637493	A	A	6637493	3	1	211	1	0	0	0	0	1	0	0	0	10300	898	31	3	3392	3	NCAPD2	12	6637493	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	2831512	6637493	127214402	385	165055											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25398284	G	G	25398284	3	3	211	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	18760791	25398284	108453611	386	165056											
CAPRIN2	65981	broad.mit.edu	37	chr12	30869284	30869284	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaacttaacacaaaaaaggGcattaggtttttctcaacac	5	8	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30869284	A	A	30869284	1	1	211	0	1	0	0	0	0	0	0	0	2662	1218	42	4		4	CAPRIN2	12	30869284	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	5471000	30869284	102982611	387	165057											
LRRK2	120892	broad.mit.edu	37	chr12	40709161	40709161	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagcatagaacagatggcGcccagagcattgagcatttt	10	9	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40709161	A	A	40709161	1	1	211	0	1	0	0	0	0	0	0	0	9120	1102	38	4		4	LRRK2	12	40709161	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	9839877	40709161	93142734	388	165058											
NELL2	4753	broad.mit.edu	37	chr12	45209816	45209816	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataactcctgaatttaagtgGgtctgttttagggtcaccaa	9	7	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45209816	T	T	45209816	2	4	211	1	0	0	0	0	0	0	0	1	10429	1219	43	2		2	NELL2	12	45209816	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	4500655	45209816	88642079	389	165059											
NEUROD4	58158	broad.mit.edu	37	chr12	55421178	55421178	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctatgattcctacccccatCatggtattgggacccaactc	6	15	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55421178	G	G	55421178	3	3	211	1	0	0	0	0	1	0	0	0	10445	826	29	4	957	4	NEUROD4	12	55421178	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	10211362	55421178	78430717	390	165060											
OR6C68	403284	broad.mit.edu	37	chr12	55886519	55886519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggctaccatgtcatatgatCgctatgtggccatctgcaaa	9	10	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55886519	A	A	55886519	3	1	211	1	0	0	0	0	1	0	0	0	11290	884	31	3	375	3	OR6C68	12	55886519	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	465341	55886519	77965376	391	165061											
ERBB3	2065	broad.mit.edu	37	chr12	56479039	56479039	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctccttgatgatgacccAagactgctcactctaagtgc	7	13	2	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56479039	T	T	56479039	1	4	211	0	1	0	0	0	0	0	0	0	5250	117	5	5		5	ERBB3	12	56479039	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	592520	56479039	77372856	392	165062											
TMEM5	10329	broad.mit.edu	37	chr12	64202608	64202608	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attcctgtggtggaagacgtGatgacagctggcaactgtgg	15	7	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64202608	A	A	64202608	2	1	211	1	0	0	0	0	0	0	0	1	16297	1277	45	4		4	TMEM5	12	64202608	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	7723569	64202608	69649287	393	165063											
NAP1L1	4673	broad.mit.edu	37	chr12	76462573	76462573	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacactagaagtatggacCagtagataaatgggacaatg	10	7	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76462573	A	A	76462573	1	1	211	0	1	0	0	0	0	0	0	0	10250	609	21	2		2	NAP1L1	12	76462573	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	12259965	76462573	57389322	394	165064											
FAM71C	196472	broad.mit.edu	37	chr12	100042185	100042185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcatcgttcgcaccagccCctgcctcacactacctgatg	9	17	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100042185	A	A	100042185	3	1	211	1	0	0	0	0	1	0	0	0	5660	623	22	2	235	2	FAM71C	12	100042185	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	23579612	100042185	33809710	395	165065											
KIAA1033	23325	broad.mit.edu	37	chr12	105538144	105538144	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatttaaagctggatgaccGaaaccctttcaaagttggca	8	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105538144	A	A	105538144	3	1	211	1	0	0	0	0	1	0	0	0	8276	1058	37	4	2172	4	KIAA1033	12	105538144	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	5495959	105538144	28313751	396	165066											
RSRC2	65117	broad.mit.edu	37	chr12	122990039	122990039	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgacatcagaacaagaagTctataagtcccaaactttac	6	10	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122990039	A	A	122990039	1	1	211	0	1	0	0	0	0	0	0	0	13826	1682	58	5		5	RSRC2	12	122990039	3'UTR	SNP	T	TCGA-73-4677-01A-01D-1265-08	17451895	122990039	10861856	397	165067											
SCARB1	949	broad.mit.edu	37	chr12	125299664	125299664	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtgcctgaactccctgTgggggaagccagtgggtcag	15	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125299664	A	A	125299664	1	1	211	0	1	0	0	0	0	0	0	0	13993	1711	59	5		5	SCARB1	12	125299664	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	2309625	125299664	8552231	398	165068											
TUBA3C	7278	broad.mit.edu	37	chr13	19755834	19755834	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccacctcaggaggccaacttCgtccaccctccagcctgggc	9	19	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19755834	A	A	19755834	1	1	211	0	1	0	0	0	0	0	0	0	16872	899	31	3		3	TUBA3C	13	19755834	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08		19755834	95414044	399	165069											
CENPJ	55835	broad.mit.edu	37	chr13	25466682	25466682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccactgcccccccagccCctggcagctcccattctact	5	23	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25466682	A	A	25466682	1	1	211	0	1	0	0	0	0	0	0	0	3264	638	22	2		2	CENPJ	13	25466682	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5710848	25466682	89703196	400	165070											
FLT1	2321	broad.mit.edu	37	chr13	28897159	28897159	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccagtccctcaactggcAatcgcctgatgagaaatgag	9	11	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28897159	G	G	28897159	1	3	211	0	1	0	0	0	0	0	0	0	5999	145	5	5		5	FLT1	13	28897159	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	3430477	28897159	86272719	401	165071											
COG6	57511	broad.mit.edu	37	chr13	40273554	40273554	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaacttttatttaaatctaGatccttttaaagcattctac	2	7	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40273554	T	T	40273554	1	4	211	0	1	0	0	0	0	0	0	0	3694	957	33	3		3	COG6	13	40273554	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	11376395	40273554	74896324	402	165072											
CYSLTR2	57105	broad.mit.edu	37	chr13	49281044	49281044	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaataacaacagcaggaacTgcacaattgaaaacttcaag	7	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49281044	A	A	49281044	3	1	211	1	0	0	0	0	1	0	0	0	4235	1580	55	5	93	5	CYSLTR2	13	49281044	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	9007490	49281044	65888834	403	165073											
PCDH17	27253	broad.mit.edu	37	chr13	58298880	58298880	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatctctttgtacctacaGttgaagctaatgttgagact	7	8	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58298880	T	T	58298880	3	4	211	1	0	0	0	0	1	0	0	0	11606	1029	36	3	2946	3	PCDH17	13	58298880	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	9017836	58298880	56870998	404	165074											
DACH1	1602	broad.mit.edu	37	chr13	72049685	72049685	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctataaaataaggcattttCcccaacacgttcttcccacc	3	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72049685	T	T	72049685	1	4	211	0	1	0	0	0	0	0	0	0	4253	870	30	4		4	DACH1	13	72049685	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	13750805	72049685	43120193	405	165075											
KLF5	688	broad.mit.edu	37	chr13	73649769	73649769	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaagattttttttttctttGaaattccttctccggtgtta	5	8	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73649769	T	T	73649769	1	4	211	0	1	0	0	0	0	0	0	0	8420	1305	45	3		3	KLF5	13	73649769	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1600084	73649769	41520109	406	165076											
DOCK9	23348	broad.mit.edu	37	chr13	99505815	99505819	+	Intron	DEL	GGGAG	-	-													tgatttttctatttaattacGggaggaaaacgtgtttccct							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99505819	-	-	99505815	6	5	211	0	1	1	0	1	0	0	0	0	4734	1131	39	0		0	DOCK9	13	99505815	Intron	DEL	GGGAG	TCGA-73-4677-01A-01D-1265-08	25856046	99505815	15664063	407	165077											
NALCN	259232	broad.mit.edu	37	chr13	101777019	101777019	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttgccctgatgctgaaaAcagacttgcgaagctgaaaa	9	10	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101777019	T	T	101777019	3	4	211	1	0	0	0	0	1	0	0	0	10242	43	2	5	3192	5	NALCN	13	101777019	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	2271204	101777019	13392859	408	165078											
ITGBL1	9358	broad.mit.edu	37	chr13	102366764	102366764	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttagttataaggtgatggtGagtaatagcctttgtaattt	10	2	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102366764	A	A	102366764	1	1	211	0	1	0	0	0	0	0	0	0	7972	1305	45	4		4	ITGBL1	13	102366764	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	589745	102366764	12803114	409	165079											
EFNB2	1948	broad.mit.edu	37	chr13	107148346	107148346	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatggggatgctgaaagccAaaaagaaaaagaaaaagaaa	11	3	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107148346	T	T	107148346	1	4	211	0	1	0	0	0	0	0	0	0	4996	145	5	5		5	EFNB2	13	107148346	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	4781582	107148346	8021532	410	165080											
COL4A2	1284	broad.mit.edu	37	chr13	111156436	111156436	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgtgttctctttgtggatCgccggccgtgccaggcgtgg	15	11	1	0	rs373463		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111156436	A	A	111156436	1	1	211	0	1	0	0	0	0	0	0	0	3722	899	31	3		3	COL4A2	13	111156436	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	4008090	111156436	4013442	411	165081											
CDH24	64403	broad.mit.edu	37	chr14	23523778	23523778	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagtcaccgtagtgctgcCtgacagcccccccatgtggc	11	16	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23523778	T	T	23523778	3	4	211	1	0	0	0	0	1	0	0	0	3139	681	24	4	1774	4	CDH24	14	23523778	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08		23523778	83825762	412	165082											
LRFN5	145581	broad.mit.edu	37	chr14	42356688	42356688	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagtttttgtgtgagcctcCtctcattactcgtcatacac	7	11	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42356688	A	A	42356688	3	1	211	1	0	0	0	0	1	0	0	0	9028	681	24	2	862	2	LRFN5	14	42356688	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	18832910	42356688	64992852	413	165083											
NID2	22795	broad.mit.edu	37	chr14	52505531	52505531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcgtcattatacaaggCaaagacccggtccacgttca	7	12	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52505531	A	A	52505531	3	1	211	1	0	0	0	0	1	0	0	0	10510	710	25	3	1992	3	NID2	14	52505531	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	10148843	52505531	54844009	414	165084											
ESR2	2100	broad.mit.edu	37	chr14	64727071	64727071	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgttaaatatctaggcaCagctcatggacctctacttt	6	11	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64727071	A	A	64727071	1	1	211	0	1	0	0	0	0	0	0	0	5299	493	17	3		3	ESR2	14	64727071	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	12221540	64727071	42622469	415	165085											
COX16	51241	broad.mit.edu	37	chr14	70793067	70793067	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtcaagttgtcttagtctTaaggctttctggatttcttc	9	7	5	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70793067	A	A	70793067	4	1	211	1	0	0	0	0	0	1	0	0	3797	1763	61	5	20	5	COX16	14	70793067	Nonsense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	6065996	70793067	36556473	416	165086											
PCNX	22990	broad.mit.edu	37	chr14	71443750	71443750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcttgtggacaggacttGccaagggacttcagtgacaa	11	10	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71443750	T	T	71443750	3	4	211	1	0	0	0	0	1	0	0	0	11685	1310	46	3	718	3	PCNX	14	71443750	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	650683	71443750	35905790	417	165087											
PCNX	22990	broad.mit.edu	37	chr14	71502801	71502801	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtgagcgattacagtctgAcctggtagtatgcattgtaa	12	6	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71502801	G	G	71502801	3	3	211	1	0	0	0	0	1	0	0	0	11685	275	10	5	3868	5	PCNX	14	71502801	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	59051	71502801	35846739	418	165088											
SIPA1L1	26037	broad.mit.edu	37	chr14	72138121	72138121	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaggaaaagtctaagccAtatccaggagccgagctcag	11	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72138121	G	G	72138121	2	3	211	1	0	0	0	0	0	0	0	1	14442	204	8	5		5	SIPA1L1	14	72138121	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	635320	72138121	35211419	419	165089											
HEATR4	399671	broad.mit.edu	37	chr14	73988938	73988938	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtccctaaaggggagtcaggGattatcaaaggtgcacttga	13	7	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73988938	A	A	73988938	1	1	211	0	1	0	0	0	0	0	0	0	7097	1189	41	4		4	HEATR4	14	73988938	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1850817	73988938	33360602	420	165090											
POMT2	29954	broad.mit.edu	37	chr14	77746667	77746667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagtacacccacccccgcCtccaccggtctccctgctct	5	23	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77746667	A	A	77746667	1	1	211	0	1	0	0	0	0	0	0	0	12341	696	24	2		2	POMT2	14	77746667	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3757729	77746667	29602873	421	165091											
ADCK1	57143	broad.mit.edu	37	chr14	78399861	78399861	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagtcactgtccatgtcacCatccttctcctcctttggaa	6	14	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78399861	T	T	78399861	1	4	211	0	1	0	0	0	0	0	0	0	288	609	21	4		4	ADCK1	14	78399861	3'UTR	SNP	C	TCGA-73-4677-01A-01D-1265-08	653194	78399861	28949679	422	165092											
C14orf145	145508	broad.mit.edu	37	chr14	80971348	80971348	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acgagtgtgggaaccttccaGaaaggttctgtcaccctaag	11	10	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80971348	A	A	80971348	2	1	211	1	0	0	0	0	0	0	0	1	1762	933	33	4		4	C14orf145	14	80971348	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	2571487	80971348	26378192	423	165093											
C14orf145	145508	broad.mit.edu	37	chr14	81304608	81304608	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaccttcgagatagctcCaattcctgttcaagctagag	7	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81304608	A	A	81304608	3	1	211	1	0	0	0	0	1	0	0	0	1762	593	21	2	2480	2	C14orf145	14	81304608	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	333260	81304608	26044932	424	165094											
KCNK10	54207	broad.mit.edu	37	chr14	88693990	88693990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccaccttatgagcttcaGggagtagaacttcatttcaa	7	12	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88693990	T	T	88693990	1	4	211	0	1	0	0	0	0	0	0	0	8129	1015	35	2		2	KCNK10	14	88693990	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	7389382	88693990	18655550	425	165095											
PTPN21	11099	broad.mit.edu	37	chr14	88971582	88971582	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcatacggatttcatttcaGggattattaagggtatagga	10	4	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88971582	C	C	88971582	1	2	211	0	1	0	0	0	0	0	0	0	12894	1015	35	4		4	PTPN21	14	88971582	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	277592	88971582	18377958	426	165096											
TDP1	55775	broad.mit.edu	37	chr14	90446981	90446981	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagaaaactcaagggttcGtaggggcctgctcacttcct	10	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90446981	T	T	90446981	1	4	211	0	1	0	0	0	0	0	0	0	15850	1160	40	3		3	TDP1	14	90446981	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1475399	90446981	16902559	427	165097											
GABRB3	2562	broad.mit.edu	37	chr15	26793116	26793116	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggaggcttctgtcccccaGgaatcgcccatgcccttctc	10	17	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26793116	T	T	26793116	3	4	211	1	0	0	0	0	1	0	0	0	6228	991	35	2	179	2	GABRB3	15	26793116	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08		26793116	75738276	428	165098											
GABRB3	2562	broad.mit.edu	37	chr15	27128271	27128271	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagagtgtgccagacgcgcaGggtgggtcggtgcagcccag	19	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27128271	A	A	27128271	1	1	211	0	1	0	0	0	0	0	0	0	6228	1015	35	4		4	GABRB3	15	27128271	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	335155	27128271	75403121	429	165099											
HERC2	8924	broad.mit.edu	37	chr15	28465959	28465959	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgccctggtccttccatAgctcccaccagacctcagtt	6	19	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28465959	G	G	28465959	1	3	211	0	1	0	0	0	0	0	0	0	7125	435	15	5		5	HERC2	15	28465959	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	1337688	28465959	74065433	430	165100											
GOLGA8A	23015	broad.mit.edu	37	chr15	34678733	34678733	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccctatctgcccttggcacCaggggcccccagcccccttc	8	21	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34678733	G	G	34678733	1	3	211	0	1	0	0	0	0	0	0	0	6627	609	21	4		4	GOLGA8A	15	34678733	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	6212774	34678733	67852659	431	165101											
PAK6	56924	broad.mit.edu	37	chr15	40568120	40568120	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcatcttactgccctgcCtctacaggtctccccagtgc	7	17	4	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40568120	T	T	40568120	1	4	211	0	1	0	0	0	0	0	0	0	11498	696	24	4		4	PAK6	15	40568120	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5889387	40568120	61963272	432	165102											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42128462	42128462	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggggatgtggcctgcagGgaggggctggggaacagctg	22	6	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42128462	T	T	42128462	1	4	211	0	1	0	0	0	0	0	0	0	8025	1247	43	2		2	JMJD7-PLA2G4B	15	42128462	5'Flank	SNP	G	TCGA-73-4677-01A-01D-1265-08	1560342	42128462	60402930	433	165103											
CCNDBP1	23582	broad.mit.edu	37	chr15	43478086	43478086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagactcagtgagtgcGcctccttccgggctcccctt	12	14	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43478086	T	T	43478086	1	4	211	0	1	0	0	0	0	0	0	0	2949	1102	38	3		3	CCNDBP1	15	43478086	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1349624	43478086	59053306	434	165104											
TGM5	9333	broad.mit.edu	37	chr15	43545699	43545699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccgggcacgccagggacCtcaccatggcacacaccact	9	19	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43545699	A	A	43545699	1	1	211	0	1	0	0	0	0	0	0	0	15956	696	24	2		2	TGM5	15	43545699	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	67613	43545699	58985693	435	165105											
FBN1	2200	broad.mit.edu	37	chr15	48713016	48713016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccacgtctgaaaaagaagCagagccaccatgatgccaac	9	12	1	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48713016	A	A	48713016	1	1	211	0	1	0	0	0	0	0	0	0	5759	725	25	3		3	FBN1	15	48713016	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5167317	48713016	53818376	436	165106											
ATP8B4	79895	broad.mit.edu	37	chr15	50154324	50154324	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgatctcatgcaccagtAggtgtttgcttgtgacaatt	10	7	1	2	rs76110051		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50154324	T	T	50154324	1	4	211	0	1	0	0	0	0	0	0	0	1201	435	15	5		5	ATP8B4	15	50154324	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	1441308	50154324	52377068	437	165107											
ATP8B4	79895	broad.mit.edu	37	chr15	50168506	50168506	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaatgaccaaagatgtgGccatggtaactgcaaaggac	10	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50168506	T	T	50168506	3	4	211	1	0	0	0	0	1	0	0	0	1201	1203	42	3	598	3	ATP8B4	15	50168506	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	14182	50168506	52362886	438	165108											
USP8	9101	broad.mit.edu	37	chr15	50757151	50757151	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatatattcagtatactttgCtcttctagaaaaagcggttt	6	6	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50757151	G	G	50757151	1	3	211	0	1	0	0	0	0	0	0	0	17216	812	28	4		4	USP8	15	50757151	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	588645	50757151	51774241	439	165109											
VPS13C	54832	broad.mit.edu	37	chr15	62232961	62232961	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggttttaaaatttcaatgTcattttgtggcaagctagcc	8	7	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62232961	A	A	62232961	3	1	211	1	0	0	0	0	1	0	0	0	17318	1667	58	5	5959	5	VPS13C	15	62232961	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	11475810	62232961	40298431	440	165110											
IGDCC4	57722	broad.mit.edu	37	chr15	65702515	65702515	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcccctacagggcactcaCcgaggctcctcaggcaatgt	10	16	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65702515	A	A	65702515	5	1	211	1	0	0	0	0	0	0	1	0	7639	521	18	3	3260	3	IGDCC4	15	65702515	Splice_Site	SNP	C	TCGA-73-4677-01A-01D-1265-08	3469554	65702515	36828877	441	165111											
THSD4	79875	broad.mit.edu	37	chr15	71634020	71634020	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatttgcctgatttcgtgGggttctccgggtcaagtgaa	13	7	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71634020	T	T	71634020	1	4	211	0	1	0	0	0	0	0	0	0	16001	1247	43	2		2	THSD4	15	71634020	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	5931505	71634020	30897372	442	165112											
THSD4	79875	broad.mit.edu	37	chr15	72063533	72063533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgtaaccctcaggactGtgtccctgaagttggtaagt	10	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72063533	T	T	72063533	3	4	211	1	0	0	0	0	1	0	0	0	16001	1377	48	3	2962	3	THSD4	15	72063533	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	429513	72063533	30467859	443	165113											
HCN4	10021	broad.mit.edu	37	chr15	73624438	73624438	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctggagagcccgcctatGgcccagagagaggaccgggc	15	14	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73624438	A	A	73624438	1	1	211	0	1	0	0	0	0	0	0	0	7065	1363	47	4		4	HCN4	15	73624438	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1560905	73624438	28906954	444	165114											
ADAMTS7	11173	broad.mit.edu	37	chr15	79059040	79059040	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggacagatcctcgtggaaAttgatgaaattgtagtcgta	11	5	0	3	rs144043775	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79059040	G	G	79059040	2	3	211	1	0	0	0	0	0	0	0	1	271	98	4	5		5	ADAMTS7	15	79059040	Silent	SNP	A	TCGA-73-4677-01A-01D-1265-08	5434602	79059040	23472352	445	165115											
ADAMTS7	11173	broad.mit.edu	37	chr15	79059427	79059428	+	Intron	DNP	GG	TT	TT													cagggtgaggggcttaccctGggaggcaggctgccagggga					rs111323916		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	79059428	TT	TT	79059427	1	4	211	0	1	0	0	0	0	0	0	0	271	1363	47	2		2	ADAMTS7	15	79059427	Intron	DNP	GG	TCGA-73-4677-01A-01D-1265-08	387	79059427	23471965	446	165116											
IL16	3603	broad.mit.edu	37	chr15	81517840	81517840	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgctaagaccagtgatgatGgctctagccctgatgagaaa	11	8	1	5			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81517840	C	C	81517840	3	2	211	1	0	0	0	0	1	0	0	0	7703	1348	47	4	102	4	IL16	15	81517840	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	2458413	81517840	21013552	447	165117											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84559960	84559960	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatggttgataacacttgaTatttttagtttccaatttgg	8	4	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84559960	A	A	84559960	1	1	211	0	1	0	0	0	0	0	0	0	276	1421	49	5		5	ADAMTSL3	15	84559960	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	3042120	84559960	17971432	448	165118											
ST8SIA2	8128	broad.mit.edu	37	chr15	92988003	92988003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggagaagctgctgcaacGgctgcacagcctcaatggca	14	12	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92988003	T	T	92988003	3	4	211	1	0	0	0	0	1	0	0	0	15350	1116	39	1	704	1	ST8SIA2	15	92988003	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	8428043	92988003	9543389	449	165119											
RAB11FIP3	9727	broad.mit.edu	37	chr16	511244	511244	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacctgatgctcctgctgatCtgacaggaggggagctcagg	14	10	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	511244	T	T	511244	1	4	211	0	1	0	0	0	0	0	0	0	13003	928	32	4		4	RAB11FIP3	16	511244	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08		511244	89843509	450	165120											
TSC2	7249	broad.mit.edu	37	chr16	2114537	2114537	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgaccggatggctgtgtcCgtaggtgaggctcccctccc	14	13	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2114537	T	T	2114537	1	4	211	0	1	0	0	0	0	0	0	0	16731	667	23	4		4	TSC2	16	2114537	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1603293	2114537	88240216	451	165121											
ZNF174	7727	broad.mit.edu	37	chr16	3452493	3452493	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttgagacggaatcttgctCtttcgcccaggcccgagtgc	11	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3452493	G	G	3452493	1	3	211	0	1	0	0	0	0	0	0	0	17870	928	32	4		4	ZNF174	16	3452493	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1337956	3452493	86902260	452	165122											
RUNDC2A	84127	broad.mit.edu	37	chr16	12145634	12145634	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttccataacctggaggtgAgttggttccatcatcctttt	8	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12145634	T	T	12145634	1	4	211	0	1	0	0	0	0	0	0	0	13854	319	11	5		5	RUNDC2A	16	12145634	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	8693141	12145634	78209119	453	165123											
SNX29	92017	broad.mit.edu	37	chr16	12571716	12571716	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggccattggaaacaaGgtaccatcccgtgctgggaa	11	9	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12571716	T	T	12571716	3	4	211	1	0	0	0	0	1	0	0	0	15012	1014	35	2	1065	2	SNX29	16	12571716	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	426082	12571716	77783037	454	165124											
PDXDC1	23042	broad.mit.edu	37	chr16	15135095	15135095	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaagggaggaaaattccAgaaaatgaaagggattgtgg	14	3	0	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15135095	C	C	15135095	1	2	211	0	1	0	0	0	0	0	0	0	11790	203	7	5		5	PDXDC1	16	15135095	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	2563379	15135095	75219658	455	165125											
C16orf62	57020	broad.mit.edu	37	chr16	19680369	19680369	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctaggacctgccctcggCatggcctggcttctacctaa	10	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19680369	T	T	19680369	1	4	211	0	1	0	0	0	0	0	0	0	1839	725	25	4		4	C16orf62	16	19680369	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	4545274	19680369	70674384	456	165126											
PDILT	204474	broad.mit.edu	37	chr16	20387364	20387364	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttctcatcagttgaaagcCtcctcccacctcttggtccc	5	17	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20387364	T	T	20387364	1	4	211	0	1	0	0	0	0	0	0	0	11768	696	24	4		4	PDILT	16	20387364	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	706995	20387364	69967389	457	165127											
PDILT	204474	broad.mit.edu	37	chr16	20395882	20395882	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtccccgagaagctgcatgGagcagagcctcccaccttta	11	14	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20395882	T	T	20395882	1	4	211	0	1	0	0	0	0	0	0	0	11768	1189	41	3		3	PDILT	16	20395882	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	8518	20395882	69958871	458	165128											
DNAH3	55567	broad.mit.edu	37	chr16	20963677	20963677	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagggagtacataagtgaaTggaaatgggaggagaacagc	17	3	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20963677	C	C	20963677	1	2	211	0	1	0	0	0	0	0	0	0	4643	1479	51	5		5	DNAH3	16	20963677	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	567795	20963677	69391076	459	165129											
POLR3E	55718	broad.mit.edu	37	chr16	22335604	22335604	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctcccaggcctgccaGgtgagttcccgggacagtcc	12	16	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22335604	T	T	22335604	1	4	211	0	1	0	0	0	0	0	0	0	12327	1015	35	2		2	POLR3E	16	22335604	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1371927	22335604	68019149	460	165130											
HS3ST4	9951	broad.mit.edu	37	chr16	26043726	26043726	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaacaatgaagtgttcTgtgtgctaacaacatagctt	7	7	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26043726	A	A	26043726	1	1	211	0	1	0	0	0	0	0	0	0	7434	1595	55	5		5	HS3ST4	16	26043726	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	3708122	26043726	64311027	461	165131											
SEPT1	1731	broad.mit.edu	37	chr16	30389862	30389862	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcagggcgagattgcaGgcggtgacctggcgaagcca	17	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30389862	T	T	30389862	1	4	211	0	1	0	0	0	0	0	0	0	14172	1015	35	2		2	SEPT1	16	30389862	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	4346136	30389862	59964891	462	165132											
ITGAX	3687	broad.mit.edu	37	chr16	31383838	31383838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcacggcctccgtgagtcCtggcactgggtctcccagag	12	15	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31383838	A	A	31383838	1	1	211	0	1	0	0	0	0	0	0	0	7959	696	24	2		2	ITGAX	16	31383838	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	993976	31383838	58970915	463	165133											
ABCC11	85320	broad.mit.edu	37	chr16	48249206	48249206	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacggatgcgctggtcgctgAcctcagatgtgtgatgctga	14	10	1	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48249206	T	T	48249206	3	4	211	1	0	0	0	0	1	0	0	0	51	275	10	5	3239	5	ABCC11	16	48249206	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	16865368	48249206	42105547	464	165134											
LONP2	83752	broad.mit.edu	37	chr16	48304118	48304118	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagatcagtggccaagactCtaggtcgagagttccacagg	13	9	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48304118	G	G	48304118	3	3	211	1	0	0	0	0	1	0	0	0	8980	912	32	4	1200	4	LONP2	16	48304118	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	54912	48304118	42050635	465	165135											
NUP93	9688	broad.mit.edu	37	chr16	56875616	56875616	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtttttctctctatgtaGatcaggcacaacctctcaga	6	11	5	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56875616	T	T	56875616	5	4	211	1	0	0	0	0	0	0	1	0	10867	956	33	3	2298	3	NUP93	16	56875616	Splice_Site	SNP	G	TCGA-73-4677-01A-01D-1265-08	8571498	56875616	33479137	466	165136											
RSPRY1	89970	broad.mit.edu	37	chr16	57247896	57247896	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actatttattcttagtcatcTagaagtgggcatcatctaga	7	7	5	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57247896	C	C	57247896	1	2	211	0	1	0	0	0	0	0	0	0	13824	1537	53	5		5	RSPRY1	16	57247896	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	372280	57247896	33106857	467	165137											
TSNAXIP1	55815	broad.mit.edu	37	chr16	67855193	67855193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaagcttcacctaccggCcgggcacagtggctcacgcc	12	15	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67855193	A	A	67855193	1	1	211	0	1	0	0	0	0	0	0	0	16757	754	26	3		3	TSNAXIP1	16	67855193	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	10607297	67855193	22499560	468	165138											
LCAT	3931	broad.mit.edu	37	chr16	67976568	67976568	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccggtcatccgcagagacActcaccgggctccagccgcc	11	18	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67976568	T	T	67976568	1	4	211	0	1	0	0	0	0	0	0	0	8730	174	6	5		5	LCAT	16	67976568	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	121375	67976568	22378185	469	165139											
DPEP2	64174	broad.mit.edu	37	chr16	68036931	68036931	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtattatgcttcaccatccCtggaaccatcttccccgtga	6	14	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68036931	T	T	68036931	1	4	211	0	1	0	0	0	0	0	0	0	4754	696	24	4		4	DPEP2	16	68036931	5'Flank	SNP	C	TCGA-73-4677-01A-01D-1265-08	60363	68036931	22317822	470	165140											
FUK	197258	broad.mit.edu	37	chr16	70503108	70503108	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagaacgtgaccagggaGgacttcctggtggggaggcc	18	9	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70503108	A	A	70503108	2	1	211	1	0	0	0	0	0	0	0	1	6156	991	35	4		4	FUK	16	70503108	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	2466177	70503108	19851645	471	165141											
CNTNAP4	85445	broad.mit.edu	37	chr16	76501258	76501258	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttttatcaggttgtcctgAcaaaagctttggatccaaat	8	7	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76501258	T	T	76501258	3	4	211	1	0	0	0	0	1	0	0	0	3681	275	10	5	1544	5	CNTNAP4	16	76501258	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	5998150	76501258	13853495	472	165142											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555337	76555337	+	Intron	SNP	C	A	A													ttgcgcccctttgaaaaactCaataatattaacttatcctg							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76555337	A	A	76555337	1	1	211	0	1	0	0	0	0	0	0	0	3681	841	29	3		3	CNTNAP4	16	76555337	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	54079	76555337	13799416	473	165143	694	2									
CNTNAP4	85445	broad.mit.edu	37	chr16	76555339	76555339	+	Intron	SNP	A	T	T													gcgcccctttgaaaaactcaAtaatattaacttatcctgtt							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76555339	T	T	76555339	1	4	211	0	1	0	0	0	0	0	0	0	3681	116	4	5		5	CNTNAP4	16	76555339	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	2	76555339	13799414	474	165144	694	2									
ADAMTS18	170692	broad.mit.edu	37	chr16	77465555	77465555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacccagagcccacaattcCaaatggtctctttccagcaa	6	15	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77465555	A	A	77465555	1	1	211	0	1	0	0	0	0	0	0	0	263	609	21	2		2	ADAMTS18	16	77465555	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	910216	77465555	12889198	475	165145											
FANCA	2175	broad.mit.edu	37	chr16	89874755	89874755	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtacgtgaagatgccacacCgcttcaagcaacaaagaact	8	11	1	3	rs143314367	byFrequency	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89874755	A	A	89874755	2	1	211	1	0	0	0	0	0	0	0	1	5719	639	23	1		1	FANCA	16	89874755	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	12409200	89874755	479998	476	165146											
SMG6	23293	broad.mit.edu	37	chr17	2186176	2186178	+	Intron	DEL	AGC	-	-													atataacatacaaacacattAgctcatggcctggtgtggtg							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2186178	-	-	2186176	6	5	211	0	1	1	0	1	0	0	0	0	14911	435	15	0		0	SMG6	17	2186176	Intron	DEL	AGC	TCGA-73-4677-01A-01D-1265-08		2186176	79009034	477	165147											
KIAA0664	23277	broad.mit.edu	37	chr17	2597328	2597328	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctcacagccctccttcaGgaagcctgcagggcaccccc	10	18	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2597328	A	A	2597328	2	1	211	1	0	0	0	0	0	0	0	1	8259	991	35	4		4	KIAA0664	17	2597328	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	411152	2597328	78597882	478	165148											
P2RX5	5026	broad.mit.edu	37	chr17	3591921	3591921	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcacaaggcagcggttaccTgaagttgtacccggaggaga	15	9	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3591921	A	A	3591921	4	1	211	1	0	0	0	0	0	1	0	0	11437	1594	55	5	402	5	P2RX5	17	3591921	Nonsense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	994593	3591921	77603289	479	165149											
CAMKK1	84254	broad.mit.edu	37	chr17	3773207	3773207	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agagggcgaaggaaggagagGagggtgggaccgctgatgag	22	4	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3773207	A	A	3773207	1	1	211	0	1	0	0	0	0	0	0	0	2632	1189	41	4		4	CAMKK1	17	3773207	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	181286	3773207	77422003	480	165150											
ALOX15	246	broad.mit.edu	37	chr17	4536594	4536594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgcacgtggcctcccCcaccagtgctcattatctga	9	16	2	1	rs61099320		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4536594	A	A	4536594	3	1	211	1	0	0	0	0	1	0	0	0	538	623	22	2	743	2	ALOX15	17	4536594	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	763387	4536594	76658616	481	165151											
ATP1B2	482	broad.mit.edu	37	chr17	7558817	7558817	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgccatccctaactggctCaccccctatcttcctgcacc	4	21	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7558817	T	T	7558817	1	4	211	0	1	0	0	0	0	0	0	0	1137	841	29	4		4	ATP1B2	17	7558817	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3022223	7558817	73636393	482	165152											
MYH13	8735	broad.mit.edu	37	chr17	10249061	10249061	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggctcacacctgtaatccCagcactttgggaggccaagg	12	12	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10249061	A	A	10249061	1	1	211	0	1	0	0	0	0	0	0	0	10126	609	21	2		2	MYH13	17	10249061	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2690244	10249061	70946149	483	165153											
MYH13	8735	broad.mit.edu	37	chr17	10263213	10263213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataccctgcatacacttggtGctcatccacgctttaaagta	6	12	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10263213	T	T	10263213	1	4	211	0	1	0	0	0	0	0	0	0	10126	1334	46	3		3	MYH13	17	10263213	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	14152	10263213	70931997	484	165154											
MYH4	4622	broad.mit.edu	37	chr17	10355109	10355109	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaagttaagagaacttaagtGattcaatacaataatgtgta	8	3	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10355109	T	T	10355109	1	4	211	0	1	0	0	0	0	0	0	0	10131	1305	45	3		3	MYH4	17	10355109	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	91896	10355109	70840101	485	165155											
MYH2	4620	broad.mit.edu	37	chr17	10435205	10435205	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatacagaagatggcctcCctgaaatttaattgatgcaa	9	7	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10435205	A	A	10435205	3	1	211	1	0	0	0	0	1	0	0	0	10129	637	22	2	3459	2	MYH2	17	10435205	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	80096	10435205	70760005	486	165156											
MYH2	4620	broad.mit.edu	37	chr17	10440622	10440622	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacttctggtacagtccaaCcacggtctcattcagggggt	11	11	3	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10440622	A	A	10440622	3	1	211	1	0	0	0	0	1	0	0	0	10129	507	18	3	4100	3	MYH2	17	10440622	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	5417	10440622	70754588	487	165157											
MYH3	4621	broad.mit.edu	37	chr17	10552068	10552068	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggcacgatcttggcttaCtgcaacctccacctcccggg	9	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10552068	A	A	10552068	1	1	211	0	1	0	0	0	0	0	0	0	10130	580	20	3		3	MYH3	17	10552068	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	111446	10552068	70643142	488	165158											
DNAH9	1770	broad.mit.edu	37	chr17	11865334	11865334	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaacagaatcaaggagctaGaggcttggacgggtgacttt	13	7	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11865334	C	C	11865334	3	2	211	1	0	0	0	0	1	0	0	0	4648	943	33	4	13264	4	DNAH9	17	11865334	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1313266	11865334	69329876	489	165159											
NCOR1	9611	broad.mit.edu	37	chr17	16068459	16068459	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatggagcttcatgtttgCctccgaatgctggatccttt	11	9	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16068459	T	T	16068459	3	4	211	1	0	0	0	0	1	0	0	0	10330	739	26	4	7038	4	NCOR1	17	16068459	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4203125	16068459	65126751	490	165160											
ZNF624	57547	broad.mit.edu	37	chr17	16526384	16526384	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atatggtttctctccagtgtGaattctctgatgtacagtta	8	7	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16526384	A	A	16526384	3	1	211	1	0	0	0	0	1	0	0	0	18175	1290	45	4	785	4	ZNF624	17	16526384	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	457925	16526384	64668826	491	165161											
FLCN	201163	broad.mit.edu	37	chr17	17129689	17129689	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggaagcagggcgacaaaCtctcttaggtttatgcaaat	11	7	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17129689	T	T	17129689	1	4	211	0	1	0	0	0	0	0	0	0	5978	580	20	4		4	FLCN	17	17129689	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	603305	17129689	64065521	492	165162											
TOM1L2	146691	broad.mit.edu	37	chr17	17788143	17788143	+	Intron	DEL	C	-	-													ctgccatggtatctgaaaatCcaaagtggcccacgtcctct							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17788143	-	-	17788143	6	5	211	0	1	1	0	1	0	0	0	0	16476	870	30	0		0	TOM1L2	17	17788143	Intron	DEL	C	TCGA-73-4677-01A-01D-1265-08	658454	17788143	63407067	493	165163											
KRT35	3886	broad.mit.edu	37	chr17	39633213	39633213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggcctgggctctgcgCgaagagaggggattgggcta	18	10	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39633213	A	A	39633213	1	1	211	0	1	0	0	0	0	0	0	0	8543	783	27	3		3	KRT35	17	39633213	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	21845070	39633213	41561997	494	165164											
KRT36	8689	broad.mit.edu	37	chr17	39642597	39642597	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcctccttcctgtggtcAgggccctgccctggtggacc	13	15	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39642597	T	T	39642597	1	4	211	0	1	0	0	0	0	0	0	0	8544	203	7	5		5	KRT36	17	39642597	3'UTR	SNP	A	TCGA-73-4677-01A-01D-1265-08	9384	39642597	41552613	495	165165											
KAT2A	2648	broad.mit.edu	37	chr17	40272593	40272593	+	Intron	DEL	C	-	-													ttctccccccttggtgcacaCccccccccaacccaatccct					rs113316904		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	40272593	-	-	40272593	6	5	211	0	1	1	0	1	0	0	0	0	8051	522	18	0		0	KAT2A	17	40272593	Intron	DEL	C	TCGA-73-4677-01A-01D-1265-08	629996	40272593	40922617	496	165166											
DHX8	1659	broad.mit.edu	37	chr17	41601039	41601039	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaccaaggaatacatgCgtgaagttaccaccatcgac	7	13	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41601039	T	T	41601039	3	4	211	1	0	0	0	0	1	0	0	0	4555	768	27	4	3577	4	DHX8	17	41601039	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1328446	41601039	39594171	497	165167											
HOXB3	3213	broad.mit.edu	37	chr17	46627830	46627830	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcgccatagggggcgcccCgttgtagtccaggttcccgg	17	13	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46627830	T	T	46627830	3	4	211	1	0	0	0	0	1	0	0	0	7369	652	23	4	137	4	HOXB3	17	46627830	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	5026791	46627830	34567380	498	165168											
KIF2B	84643	broad.mit.edu	37	chr17	51900917	51900917	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagatccgagctagacgcGccctcgatgtcaataccaga	11	12	1	3	rs149901637		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51900917	T	T	51900917	3	4	211	1	0	0	0	0	1	0	0	0	8368	1087	38	3	525	3	KIF2B	17	51900917	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	5273087	51900917	29294293	499	165169											
TBX4	9496	broad.mit.edu	37	chr17	59560244	59560244	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggttcttcctgaatgttActttgtctttcagcagacgg	9	8	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59560244	G	G	59560244	1	3	211	0	1	0	0	0	0	0	0	0	15782	406	14	5		5	TBX4	17	59560244	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	7659327	59560244	21634966	500	165170											
MARCH10	162333	broad.mit.edu	37	chr17	60802397	60802397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccaggagggggttgcttGgggaacccccggctatctga	16	11	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60802397	T	T	60802397	3	4	211	1	0	0	0	0	1	0	0	0	9391	1348	47	2	440	2	MARCH10	17	60802397	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	1242153	60802397	20392813	501	165171											
ACE	1636	broad.mit.edu	37	chr17	61574261	61574261	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgttgagctacttcaaGccgctgctggactggctccg	12	13	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61574261	T	T	61574261	3	4	211	1	0	0	0	0	1	0	0	0	136	962	34	3	3903	3	ACE	17	61574261	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	771864	61574261	19620949	502	165172											
DDX42	11325	broad.mit.edu	37	chr17	61886045	61886045	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catttatacctttatgaataAaatcgtggttttaaagtatg	6	4	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61886045	G	G	61886045	1	3	211	0	1	0	0	0	0	0	0	0	4395	29	1	5		5	DDX42	17	61886045	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	311784	61886045	19309165	503	165173											
CSHL1	1444	broad.mit.edu	37	chr17	61988473	61988473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaacctgaggttagtgcCcccgtcccatctgcagggcg	11	16	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61988473	T	T	61988473	1	4	211	0	1	0	0	0	0	0	0	0	3976	638	22	4		4	CSHL1	17	61988473	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	102428	61988473	19206737	504	165174											
ERN1	2081	broad.mit.edu	37	chr17	62175545	62175545	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcaaacttccatccagCgttgacacaaacaacaaggt	7	12	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62175545	T	T	62175545	2	4	211	1	0	0	0	0	0	0	0	1	5279	755	27	4		4	ERN1	17	62175545	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	187072	62175545	19019665	505	165175											
PSMD12	5718	broad.mit.edu	37	chr17	65340942	65340942	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaatctgtaaaaattaaGtattaactaatataatagca	3	5	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65340942	A	A	65340942	1	1	211	0	1	0	0	0	0	0	0	0	12801	1044	36	4		4	PSMD12	17	65340942	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3165397	65340942	15854268	506	165176											
ABCA8	10351	broad.mit.edu	37	chr17	66903951	66903951	+	Frame_Shift_Del	DEL	G	-	-													tcgcttttggctgataatttGgcatcagggatgtgctgttt							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66903951	-	-	66903951	7	5	211	1	0	1	0	1	0	0	0	0	38	1335	47	0	2749	0	ABCA8	17	66903951	Frame_Shift_Del	DEL	G	TCGA-73-4677-01A-01D-1265-08	1563009	66903951	14291259	507	165177											
EXOC7	23265	broad.mit.edu	37	chr17	74079892	74079892	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccccagctccaccctcaGcctaaggcactcctgatagt	6	19	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74079892	A	A	74079892	1	1	211	0	1	0	0	0	0	0	0	0	5352	986	34	4		4	EXOC7	17	74079892	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	7175941	74079892	7115318	508	165178											
ZNF750	79755	broad.mit.edu	37	chr17	80789581	80789581	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtagatggtggccagcccGtgctctgtgtaaaagtgagg	16	7	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80789581	A	A	80789581	2	1	211	1	0	0	0	0	0	0	0	1	18261	1136	40	4		4	ZNF750	17	80789581	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	6709689	80789581	405629	509	165179											
YES1	7525	broad.mit.edu	37	chr18	751658	751659	+	Intron	DNP	CC	AA	AA													cagtggttcctgtgtaaagaCcagatttctgtcagtatttc							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	751659	AA	AA	751658	1	1	211	0	1	0	0	0	0	0	0	0	17601	522	18	3		3	YES1	18	751658	Intron	DNP	CC	TCGA-73-4677-01A-01D-1265-08		751658	77325590	510	165180											
ZFP161	7541	broad.mit.edu	37	chr18	5291456	5291456	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtccagcctggtgtctgttCatctttcacttcactcatcc	6	14	6	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5291456	G	G	5291456	3	3	211	1	0	0	0	0	1	0	0	0	17766	835	29	4	602	4	ZFP161	18	5291456	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	4539798	5291456	72785792	511	165181											
AFG3L2	10939	broad.mit.edu	37	chr18	12356495	12356495	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggtagcagactgcagtcCtagctggtgcgagggaaggt	16	7	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12356495	A	A	12356495	1	1	211	0	1	0	0	0	0	0	0	0	360	696	24	2		2	AFG3L2	18	12356495	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	7065039	12356495	65720753	512	165182											
ANKRD30B	374860	broad.mit.edu	37	chr18	14784557	14784557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttttcaatttaactatGcaaagatgaatagttcaata	4	4	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14784557	T	T	14784557	1	4	211	0	1	0	0	0	0	0	0	0	659	1334	46	3		3	ANKRD30B	18	14784557	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	2428062	14784557	63292691	513	165183											
ZNF521	25925	broad.mit.edu	37	chr18	22804736	22804736	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggtctgaactgcagacCcattccctgtcttttgcatg	9	12	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22804736	T	T	22804736	3	4	211	1	0	0	0	0	1	0	0	0	18092	623	22	4	809	4	ZNF521	18	22804736	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	8020179	22804736	55272512	514	165184											
ZNF521	25925	broad.mit.edu	37	chr18	22805482	22805482	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactgtgagtggtgatgtgGcattgcagctccacctcggt	13	9	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22805482	A	A	22805482	2	1	211	1	0	0	0	0	0	0	0	1	18092	1195	42	4		4	ZNF521	18	22805482	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	746	22805482	55271766	515	165185											
DSG1	1828	broad.mit.edu	37	chr18	28906930	28906930	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agttcgcagcagcctgtcgtGaaggtgaagacaactcaaag	12	9	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28906930	A	A	28906930	3	1	211	1	0	0	0	0	1	0	0	0	4816	1291	45	4	188	4	DSG1	18	28906930	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	6101448	28906930	49170318	516	165186											
KLHL14	57565	broad.mit.edu	37	chr18	30350335	30350335	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccccaggccgtcctggcCgccgacccctcccccgagag	12	22	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30350335	A	A	30350335	3	1	211	1	0	0	0	0	1	0	0	0	8441	652	23	1	1698	1	KLHL14	18	30350335	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1443405	30350335	47726913	517	165187											
C18orf34	374864	broad.mit.edu	37	chr18	30926060	30926060	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccagcctcccaaagcgtggGattacaggcatgagccatgg	12	13	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30926060	A	A	30926060	1	1	211	0	1	0	0	0	0	0	0	0	1920	1189	41	4		4	C18orf34	18	30926060	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	575725	30926060	47151188	518	165188											
SETBP1	26040	broad.mit.edu	37	chr18	42618602	42618602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctctccttgctgcatctGcagcaacgtcggatgcaggt	10	12	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42618602	T	T	42618602	3	4	211	1	0	0	0	0	1	0	0	0	14242	1319	46	3	4360	3	SETBP1	18	42618602	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	11692542	42618602	35458646	519	165189											
TCEB3B	51224	broad.mit.edu	37	chr18	44560052	44560052	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcacactgctggcgcagCgtcggcacctggagctggca	16	13	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44560052	A	A	44560052	2	1	211	1	0	0	0	0	0	0	0	1	15804	755	27	3		3	TCEB3B	18	44560052	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	1941450	44560052	33517196	520	165190											
TCEB3B	51224	broad.mit.edu	37	chr18	44560065	44560065	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcagcgtcggcacctggAgctggcaggcaggcctggag	19	12	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44560065	C	C	44560065	3	2	211	1	0	0	0	0	1	0	0	0	15804	304	11	5	694	5	TCEB3B	18	44560065	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	13	44560065	33517183	521	165191											
WDR7	23335	broad.mit.edu	37	chr18	54358406	54358406	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactggatcttactttttacAacaatatggagtagattgtg	8	6	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54358406	T	T	54358406	1	4	211	0	1	0	0	0	0	0	0	0	17447	145	5	5		5	WDR7	18	54358406	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	9798341	54358406	23718842	522	165192											
CDH20	28316	broad.mit.edu	37	chr18	59217106	59217106	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actaccagggaatatctgacTatcctctttccttcctacac	4	14	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59217106	A	A	59217106	1	1	211	0	1	0	0	0	0	0	0	0	3136	1537	53	5		5	CDH20	18	59217106	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	4858700	59217106	18860142	523	165193											
RNF152	220441	broad.mit.edu	37	chr18	59483586	59483586	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctcatctgctgcaggcaCactgaacagcaggtgtgctt	11	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59483586	T	T	59483586	2	4	211	1	0	0	0	0	0	0	0	1	13564	465	17	4		4	RNF152	18	59483586	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	266480	59483586	18593662	524	165194											
SERPINB4	6318	broad.mit.edu	37	chr18	61310714	61310714	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctaatgctgatgtgatgCtgataggggaatagaagatg	13	5	0	5			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61310714	T	T	61310714	3	4	211	1	0	0	0	0	1	0	0	0	14216	797	28	4	1102	4	SERPINB4	18	61310714	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1827128	61310714	16766534	525	165195											
NFATC1	4772	broad.mit.edu	37	chr18	77211917	77211917	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacctgtgcacggtcaccggGacggggcttatggggtgtgg	18	10	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77211917	T	T	77211917	1	4	211	0	1	0	0	0	0	0	0	0	10456	1189	41	3		3	NFATC1	18	77211917	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	15901203	77211917	865331	526	165196											
STK11	6794	broad.mit.edu	37	chr19	1207021	1207028	+	Frame_Shift_Del	DEL	CAGCCGCG	-	-													actccaccgaggtcatctacCagccgcgccgcaagcgggcc					rs121913324		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1207028	-	-	1207021	7	5	211	1	0	1	0	1	0	0	0	0	15405	595	21	0	111	0	STK11	19	1207021	Frame_Shift_Del	DEL	CAGCCGCG	TCGA-73-4677-01A-01D-1265-08		1207021	57921962	527	165197											
TBXA2R	6915	broad.mit.edu	37	chr19	3595963	3595964	+	Intron	DNP	CC	AG	AG													agagctgtcagcctgggcccCcgcctccagccccgcccgcc							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	3595964	AG	AG	3595963	1	1	211	0	1	0	0	0	0	0	0	0	15785	638	22	2		2	TBXA2R	19	3595963	Intron	DNP	CC	TCGA-73-4677-01A-01D-1265-08	2388942	3595963	55533020	528	165198											
APBA3	9546	broad.mit.edu	37	chr19	3753014	3753014	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaggagtggcgcgtccctGgggtgtcccacccacctcct	15	15	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3753014	A	A	3753014	1	1	211	0	1	0	0	0	0	0	0	0	760	1363	47	4		4	APBA3	19	3753014	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	157051	3753014	55375969	529	165199											
COL5A3	50509	broad.mit.edu	37	chr19	10084575	10084575	+	Intron	DEL	G	-	-													ccccatctctgagccttcctGgccccccaagagttctcacc							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10084575	-	-	10084575	6	5	211	0	1	1	0	1	0	0	0	0	3730	1363	47	0		0	COL5A3	19	10084575	Intron	DEL	G	TCGA-73-4677-01A-01D-1265-08	6331561	10084575	49044408	530	165200											
KEAP1	9817	broad.mit.edu	37	chr19	10602719	10602719	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactgcaggatctcgcactTctgcagctgcatctgcagga	12	12	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602719	A	A	10602719	4	1	211	1	0	0	0	0	0	1	0	0	8211	1792	62	5	1031	5	KEAP1	19	10602719	Nonsense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	518144	10602719	48526264	531	165201											
LDLR	3949	broad.mit.edu	37	chr19	11230871	11230871	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaacctactgtccccagAggatatggttctcttccaca	7	12	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11230871	T	T	11230871	3	4	211	1	0	0	0	0	1	0	0	0	8776	304	11	5	1999	5	LDLR	19	11230871	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	628152	11230871	47898112	532	165202											
RGL3	57139	broad.mit.edu	37	chr19	11508067	11508067	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggaggtgaggtgagggCcccggccccaagggcagggc	22	11	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11508067	A	A	11508067	1	1	211	0	1	0	0	0	0	0	0	0	13386	754	26	3		3	RGL3	19	11508067	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	277196	11508067	47620916	533	165203											
CC2D1A	54862	broad.mit.edu	37	chr19	14031829	14031829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagaagtgtattagtcaaGgtccagctgctgtaacaaat	9	7	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14031829	T	T	14031829	1	4	211	0	1	0	0	0	0	0	0	0	2752	1015	35	2		2	CC2D1A	19	14031829	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	2523762	14031829	45097154	534	165204											
OR7A17	26333	broad.mit.edu	37	chr19	14991993	14991993	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttggagaggaagaagtacaTgggggtgtggaggtgggagt	22	1	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14991993	A	A	14991993	3	1	211	1	0	0	0	0	1	0	0	0	11309	1464	51	5	756	5	OR7A17	19	14991993	Missense_Mutation	SNP	T	TCGA-73-4677-01A-01D-1265-08	960164	14991993	44136990	535	165205											
SLC1A6	6511	broad.mit.edu	37	chr19	15079179	15079179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggccctcccggtgcagccCctccttggagcccttcccgg	11	21	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15079179	A	A	15079179	3	1	211	1	0	0	0	0	1	0	0	0	14549	623	22	2	1238	2	SLC1A6	19	15079179	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	87186	15079179	44049804	536	165206											
UNC13A	23025	broad.mit.edu	37	chr19	17740002	17740002	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagggagtcctggggatgcTgaatggggctgaggagggag	22	4	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17740002	A	A	17740002	1	1	211	0	1	0	0	0	0	0	0	0	17110	1595	55	5		5	UNC13A	19	17740002	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	2660823	17740002	41388981	537	165207											
ZNF676	163223	broad.mit.edu	37	chr19	22379629	22379629	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtagagagagctggttctGacttatatgaatgactgaaa	12	4	1	6			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22379629	A	A	22379629	1	1	211	0	1	0	0	0	0	0	0	0	18210	1305	45	4		4	ZNF676	19	22379629	5'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	4639627	22379629	36749354	538	165208											
ZNF536	9745	broad.mit.edu	37	chr19	30934399	30934399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggaaattccctgcccGccaatgctgttgattcatgg	10	10	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934399	T	T	30934399	1	4	211	0	1	0	0	0	0	0	0	0	18101	1102	38	3		3	ZNF536	19	30934399	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	8554770	30934399	28194584	539	165209											
DPY19L3	147991	broad.mit.edu	37	chr19	32949605	32949605	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagtaatgatcagattgcAtgcggtctgggcttaagtct	12	7	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32949605	C	C	32949605	1	2	211	0	1	0	0	0	0	0	0	0	4782	232	8	5		5	DPY19L3	19	32949605	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	2015206	32949605	26179378	540	165210											
WDR88	126248	broad.mit.edu	37	chr19	33639782	33639782	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catggaatctgcataatggaCgccgagaacatcaccaccgt	9	12	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33639782	T	T	33639782	2	4	211	1	0	0	0	0	0	0	0	1	17462	535	19	4		4	WDR88	19	33639782	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	690177	33639782	25489201	541	165211											
YIF1B	90522	broad.mit.edu	37	chr19	38799568	38799568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcacccacacacccgctcCatataggcccggaagagaga	10	15	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38799568	A	A	38799568	1	1	211	0	1	0	0	0	0	0	0	0	17603	609	21	2		2	YIF1B	19	38799568	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5159786	38799568	20329415	542	165212											
PSG6	5675	broad.mit.edu	37	chr19	43528992	43528992	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttctcgtccactgtatGccggtccatatataattatt	6	10	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43528992	T	T	43528992	3	4	211	1	0	0	0	0	1	0	0	0	12765	1319	46	3		3	PSG6	19	43528992	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08	4729424	43528992	15599991	543	165213											
PSG9	5678	broad.mit.edu	37	chr19	43770475	43770475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgaaggacaagggacaGgtgtggctagaacctcctag	13	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43770475	T	T	43770475	1	4	211	0	1	0	0	0	0	0	0	0	12768	1015	35	2		2	PSG9	19	43770475	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	241483	43770475	15358508	544	165214											
ZNF404	342908	broad.mit.edu	37	chr19	44377779	44377779	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taagctgtgaataaaacctaAaggccttctcacatccattg	6	10	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44377779	T	T	44377779	3	4	211	1	0	0	0	0	1	0	0	0	18013	14	1	5	1075	5	ZNF404	19	44377779	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	607304	44377779	14751204	545	165215											
SIGLEC8	27181	broad.mit.edu	37	chr19	51960405	51960405	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagctgaaggccctgcTcccccaaccccagggagggg	13	16	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51960405	A	A	51960405	1	1	211	0	1	0	0	0	0	0	0	0	14427	1566	54	5		5	SIGLEC8	19	51960405	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	7582626	51960405	7168578	546	165216											
ZNF528	84436	broad.mit.edu	37	chr19	52909907	52909908	+	Intron	DNP	GG	TT	TT													gtgaacacaggtgagagctcGggtgggcagagtggaggccc							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	52909908	TT	TT	52909907	1	4	211	0	1	0	0	0	0	0	0	0	18096	1131	39	1		1	ZNF528	19	52909907	Intron	DNP	GG	TCGA-73-4677-01A-01D-1265-08	949502	52909907	6219076	547	165217											
LILRA5	353514	broad.mit.edu	37	chr19	54818597	54818598	+	3'UTR	DNP	CC	AA	AA													agaaattgccagcagacagtCcagatggcataggcctcaga							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	54818598	AA	AA	54818597	1	1	211	0	1	0	0	0	0	0	0	0	8860	870	30	3		3	LILRA5	19	54818597	3'UTR	DNP	CC	TCGA-73-4677-01A-01D-1265-08	1908690	54818597	4310386	548	165218											
LILRA1	11024	broad.mit.edu	37	chr19	55107243	55107244	+	Missense_Mutation	DNP	GC	AA	AA													ggagaacgtgacttcctccaGctccctggcccacagcccca							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55107244	AA	AA	55107243	3	1	211	1	0	0	0	0	1	0	0	0	8856	962	34	4	819	4	LILRA1	19	55107243	Missense_Mutation	DNP	GC	TCGA-73-4677-01A-01D-1265-08	288646	55107243	4021740	549	165219											
KIR2DL1	3802	broad.mit.edu	37	chr19	55294945	55294945	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcttctacagatgctgcGgtaatggaccaagagtctgc	10	11	3	2	rs143586661	byFrequency	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55294945	A	A	55294945	2	1	211	1	0	0	0	0	0	0	0	1	8387	1103	39	4		4	KIR2DL1	19	55294945	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	187702	55294945	3834038	550	165220											
NLRP4	147945	broad.mit.edu	37	chr19	56370626	56370626	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acagctctacgtgagtccatCctatgactttttctctcttc	5	13	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56370626	T	T	56370626	1	4	211	0	1	0	0	0	0	0	0	0	10574	870	30	4		4	NLRP4	19	56370626	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1075681	56370626	2758357	551	165221											
NLRP4	147945	broad.mit.edu	37	chr19	56392776	56392776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattagggagaaagatgagCtgcagaaaagggaaaaagta	14	2	0	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56392776	A	A	56392776	1	1	211	0	1	0	0	0	0	0	0	0	10574	812	28	3		3	NLRP4	19	56392776	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	22150	56392776	2736207	552	165222											
DUXA	503835	broad.mit.edu	37	chr19	57672279	57672279	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccactggaatccactccaGgagaactaccctcatacaag	6	14	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57672279	A	A	57672279	1	1	211	0	1	0	0	0	0	0	0	0	4874	1015	35	4		4	DUXA	19	57672279	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1279503	57672279	1456704	553	165223											
PLCB4	5332	broad.mit.edu	37	chr20	9424733	9424733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacacatattggtgacacCaatatatttttgtttctcac	4	8	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9424733	A	A	9424733	1	1	211	0	1	0	0	0	0	0	0	0	12125	609	21	2		2	PLCB4	20	9424733	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08		9424733	53600787	554	165224											
CSRP2BP	57325	broad.mit.edu	37	chr20	18131617	18131617	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaaatcttatacttcAaggaatatgtaaagaatgaa	5	3	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18131617	T	T	18131617	1	4	211	0	1	0	0	0	0	0	0	0	4002	145	5	5		5	CSRP2BP	20	18131617	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	8706884	18131617	44893903	555	165225											
VSX1	30813	broad.mit.edu	37	chr20	25059410	25059410	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattggctcactgaatgtgGgaatgacacgttctctgtgg	13	7	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25059410	A	A	25059410	1	1	211	0	1	0	0	0	0	0	0	0	17358	1232	43	4		4	VSX1	20	25059410	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	6927793	25059410	37966110	556	165226											
C20orf185	359710	broad.mit.edu	37	chr20	31649504	31649504	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagagcccctagtgtccGcccgaccctgtcatctgggt	10	16	2	1	rs145528176	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31649504	T	T	31649504	1	4	211	0	1	0	0	0	0	0	0	0	2119	1102	38	3		3	C20orf185	20	31649504	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	6590094	31649504	31376016	557	165227											
E2F1	1869	broad.mit.edu	37	chr20	32267639	32267639	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgatgtcatagatgcgcCgcttctgcaccttcagcacc	10	13	3	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32267639	T	T	32267639	3	4	211	1	0	0	0	0	1	0	0	0	4906	652	23	4	839	4	E2F1	20	32267639	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	618135	32267639	30757881	558	165228											
GDF5	8200	broad.mit.edu	37	chr20	33981820	33981820	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcacacaatttggttggCtaatctataaatacatgaca	5	9	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33981820	A	A	33981820	1	1	211	0	1	0	0	0	0	0	0	0	6380	812	28	3		3	GDF5	20	33981820	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1714181	33981820	29043700	559	165229											
CEP250	11190	broad.mit.edu	37	chr20	34061602	34061602	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctagaaacagaagatgggatGttgaaacagggtctcttggc	13	6	1	4			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34061602	C	C	34061602	1	2	211	0	1	0	0	0	0	0	0	0	3282	1392	48	4		4	CEP250	20	34061602	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	79782	34061602	28963918	560	165230											
PTPRT	11122	broad.mit.edu	37	chr20	40877313	40877313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagagtcttgcaggcagCagcagagactcacctccttt	10	13	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40877313	A	A	40877313	1	1	211	0	1	0	0	0	0	0	0	0	12920	725	25	3		3	PTPRT	20	40877313	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	6815711	40877313	22148207	561	165231											
PLTP	5360	broad.mit.edu	37	chr20	44538801	44538801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcccctttcaagtccaggCctggggaagcgggagtgggt	16	11	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44538801	A	A	44538801	1	1	211	0	1	0	0	0	0	0	0	0	12209	754	26	3		3	PLTP	20	44538801	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3661488	44538801	18486719	562	165232											
PREX1	57580	broad.mit.edu	37	chr20	47295777	47295777	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatctaaaggataggtgcCactgcaagccccatttaatg	8	10	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47295777	A	A	47295777	1	1	211	0	1	0	0	0	0	0	0	0	12582	609	21	2		2	PREX1	20	47295777	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2756976	47295777	15729743	563	165233											
MC3R	4159	broad.mit.edu	37	chr20	54823836	54823836	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagattttgtctttcctgtGagcagcagcagcttcctacg	11	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54823836	A	A	54823836	1	1	211	0	1	0	0	0	0	0	0	0	9458	1305	45	4		4	MC3R	20	54823836	5'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	7528059	54823836	8201684	564	165234											
SPO11	23626	broad.mit.edu	37	chr20	55912900	55912900	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgctgtggccacatgcagAgtactaaccgttgtatgagc	12	9	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55912900	G	G	55912900	1	3	211	0	1	0	0	0	0	0	0	0	15195	319	11	5		5	SPO11	20	55912900	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	1089064	55912900	7112620	565	165235											
ZBTB46	140685	broad.mit.edu	37	chr20	62421979	62421979	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagcaggacgttcttgtgCgccttgaagaccttgccctc	10	15	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62421979	T	T	62421979	2	4	211	1	0	0	0	0	0	0	0	1	17673	755	27	4		4	ZBTB46	20	62421979	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	6509079	62421979	603541	566	165236											
GCFC1	94104	broad.mit.edu	37	chr21	34117919	34117919	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatcaccttttccacaatGgtaggtagtagggcaacatc	9	9	1	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34117919	A	A	34117919	2	1	211	1	0	0	0	0	0	0	0	1	6351	1335	47	4		4	GCFC1	21	34117919	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08		34117919	14011976	567	165237											
SETD4	54093	broad.mit.edu	37	chr21	37423716	37423716	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaaacccttgtaaaactttCtttcttttttcttttctatt	1	9	4	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37423716	A	A	37423716	1	1	211	0	1	0	0	0	0	0	0	0	14246	928	32	3		3	SETD4	21	37423716	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	3305797	37423716	10706179	568	165238											
PCNT	5116	broad.mit.edu	37	chr21	47836155	47836156	+	Missense_Mutation	DNP	GC	TT	TT													ctcagcacacctgttggagaGcagctggagtgatgattcct							TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	47836156	TT	TT	47836155	3	4	211	1	0	0	0	0	1	0	0	0	11684	971	34	3	6441	3	PCNT	21	47836155	Missense_Mutation	DNP	GC	TCGA-73-4677-01A-01D-1265-08	10412439	47836155	293740	569	165239											
GNAZ	2781	broad.mit.edu	37	chr22	23438217	23438217	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctctttgcgctgacggGccccgctgagagcaagggcg	16	13	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23438217	T	T	23438217	3	4	211	1	0	0	0	0	1	0	0	0	6578	1203	42	3	337	3	GNAZ	22	23438217	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08		23438217	27866349	570	165240											
PIWIL3	440822	broad.mit.edu	37	chr22	25156026	25156026	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctccctccaaatggcactCgcagggcacaaggcaaagga	10	13	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25156026	A	A	25156026	1	1	211	0	1	0	0	0	0	0	0	0	12054	899	31	3		3	PIWIL3	22	25156026	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	1717809	25156026	26148540	571	165241											
NIPSNAP1	8508	broad.mit.edu	37	chr22	29957721	29957721	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtagcagagtagtccccAgaacagggctgggctgcatc	16	10	0	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29957721	G	G	29957721	1	3	211	0	1	0	0	0	0	0	0	0	10524	203	7	5		5	NIPSNAP1	22	29957721	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	4801695	29957721	21346845	572	165242											
GGA1	26088	broad.mit.edu	37	chr22	38016148	38016148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggctagagggcttcccGgggagtcctggggaggcagt	19	8	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38016148	T	T	38016148	1	4	211	0	1	0	0	0	0	0	0	0	6416	1131	39	1		1	GGA1	22	38016148	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	8058427	38016148	13288418	573	165243											
GRAP2	9402	broad.mit.edu	37	chr22	40365549	40365549	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggcaggggtatgggaactGtccttctctgggatccctgg	16	10	1	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40365549	C	C	40365549	1	2	211	0	1	0	0	0	0	0	0	0	6820	1392	48	4		4	GRAP2	22	40365549	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	2349401	40365549	10939017	574	165244											
EP300	2033	broad.mit.edu	37	chr22	41513148	41513148	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagcagttttttattttgGttttgtcatactttgacctt	7	5	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41513148	T	T	41513148	1	4	211	0	1	0	0	0	0	0	0	0	5190	1276	44	3		3	EP300	22	41513148	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1147599	41513148	9791418	575	165245											
PHF5A	84844	broad.mit.edu	37	chr22	41864685	41864685	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactaagccggccaccggaaGcttcgggaacttccgtccga	11	14	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41864685	A	A	41864685	1	1	211	0	1	0	0	0	0	0	0	0	11932	986	34	4		4	PHF5A	22	41864685	5'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	351537	41864685	9439881	576	165246											
NLGN4X	57502	broad.mit.edu	37	chrX	6069150	6069150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgggcagcatgtcatgcaGtaaggatctctcatccaggt	12	9	3	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6069150	T	T	6069150	3	4	211	1	0	0	0	0	1	0	0	0	10559	1020	36	3	2112	3	NLGN4X	23	6069150	Missense_Mutation	SNP	G	TCGA-73-4677-01A-01D-1265-08		6069150	149201410	577	165247											
WWC3	55841	broad.mit.edu	37	chrX	10066716	10066716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtgtgtgattggtcacGtctcatcggagaacagcgtt	12	9	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10066716	T	T	10066716	1	4	211	0	1	0	0	0	0	0	0	0	17540	1160	40	3		3	WWC3	23	10066716	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3997566	10066716	145203844	578	165248											
MAGEB16	139604	broad.mit.edu	37	chrX	35820648	35820648	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaatgtgcccgcagatgCtctcgaccagaaagtggctt	12	11	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35820648	T	T	35820648	3	4	211	1	0	0	0	0	1	0	0	0	9266	797	28	4	337	4	MAGEB16	23	35820648	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	25753932	35820648	119449912	579	165249											
CXorf22	170063	broad.mit.edu	37	chrX	36007662	36007662	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctatatctagaattaactGtaaaacccaagactttcatg	4	9	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36007662	T	T	36007662	1	4	211	0	1	0	0	0	0	0	0	0	4135	1392	48	3		3	CXorf22	23	36007662	3'UTR	SNP	G	TCGA-73-4677-01A-01D-1265-08	187014	36007662	119262898	580	165250											
SSX7	280658	broad.mit.edu	37	chrX	52679341	52679341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatattctcccactcttacCagtgtttgcatccatggagg	7	11	2	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52679341	A	A	52679341	1	1	211	0	1	0	0	0	0	0	0	0	15327	609	21	2		2	SSX7	23	52679341	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	16671679	52679341	102591219	581	165251											
FGD1	2245	broad.mit.edu	37	chrX	54497132	54497132	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggcgtgatggtggaggGgggatgggctccagtggggg	25	4	0	1	rs113204374		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54497132	T	T	54497132	2	4	211	1	0	0	0	0	0	0	0	1	5889	1219	43	2		2	FGD1	23	54497132	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	1817791	54497132	100773428	582	165252											
TRO	7216	broad.mit.edu	37	chrX	54949684	54949684	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccaaggccaaattaccaAtgagacagccagtatccaca	6	14	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54949684	G	G	54949684	3	3	211	1	0	0	0	0	1	0	0	0	16699	101	4	5	725	5	TRO	23	54949684	Missense_Mutation	SNP	A	TCGA-73-4677-01A-01D-1265-08	452552	54949684	100320876	583	165253											
AMMECR1	9949	broad.mit.edu	37	chrX	109459671	109459671	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatgggctgaaagagttaTtttctgggcctaatttttaa	10	4	1	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109459671	C	C	109459671	1	2	211	0	1	0	0	0	0	0	0	0	578	1508	52	5		5	AMMECR1	23	109459671	Intron	SNP	T	TCGA-73-4677-01A-01D-1265-08	54509987	109459671	45810889	584	165254											
PLS3	5358	broad.mit.edu	37	chrX	114874716	114874716	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgacattttcaattctttGtaggattccaaagcctattt	5	8	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114874716	T	T	114874716	1	4	211	0	1	0	0	0	0	0	0	0	12203	1392	48	3		3	PLS3	23	114874716	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	5415045	114874716	40395844	585	165255											
KIAA1210	57481	broad.mit.edu	37	chrX	118222823	118222823	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagttcttcagaaccatcCccctcctcaggaatattctc	5	16	4	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118222823	A	A	118222823	2	1	211	1	0	0	0	0	0	0	0	1	8284	610	22	2		2	KIAA1210	23	118222823	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	3348107	118222823	37047737	586	165256											
DCAF12L1	139170	broad.mit.edu	37	chrX	125685455	125685455	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcctccaggaatttctgGgcccggacgtcatagaagag	11	11	2	2	rs149056465	byFrequency	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125685455	T	T	125685455	2	4	211	1	0	0	0	0	0	0	0	1	4297	1219	43	2		2	DCAF12L1	23	125685455	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	7462632	125685455	29585105	587	165257											
RAP2C	57826	broad.mit.edu	37	chrX	131348488	131348488	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatatcctattcaagcaatCacaaagagaaagaaaaacat	5	7	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131348488	A	A	131348488	1	1	211	0	1	0	0	0	0	0	0	0	13150	841	29	3		3	RAP2C	23	131348488	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	5663033	131348488	23922072	588	165258											
GPC3	2719	broad.mit.edu	37	chrX	133086984	133086984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagcattaatgctggaatGgtaatttataaattatactt	7	4	0	0			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133086984	T	T	133086984	1	4	211	0	1	0	0	0	0	0	0	0	6664	1363	47	2		2	GPC3	23	133086984	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	1738496	133086984	22183576	589	165259											
ZNF75D	7626	broad.mit.edu	37	chrX	134427884	134427884	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatagtctcaagcggtccGgttgcttcatgataacggaa	11	9	2	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134427884	T	T	134427884	2	4	211	1	0	0	0	0	0	0	0	1	18263	1103	39	1		1	ZNF75D	23	134427884	Silent	SNP	G	TCGA-73-4677-01A-01D-1265-08	1340900	134427884	20842676	590	165260											
GPR112	139378	broad.mit.edu	37	chrX	135431775	135431775	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacttccacattggctgaCgttaagcacacatttgagaa	7	10	1	2			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135431775	T	T	135431775	2	4	211	1	0	0	0	0	0	0	0	1	6694	535	19	4		4	GPR112	23	135431775	Silent	SNP	C	TCGA-73-4677-01A-01D-1265-08	1003891	135431775	19838785	591	165261											
AFF2	2334	broad.mit.edu	37	chrX	147924847	147924847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttggagatcaatttaattcAgaataatcatttgacagtag	7	4	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147924847	T	T	147924847	1	4	211	0	1	0	0	0	0	0	0	0	357	203	7	5		5	AFF2	23	147924847	Intron	SNP	A	TCGA-73-4677-01A-01D-1265-08	12493072	147924847	7345713	592	165262											
CD99L2	83692	broad.mit.edu	37	chrX	149964083	149964083	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgaggctcctataggacCtctgcagaatcactttgaga	9	11	2	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149964083	A	A	149964083	1	1	211	0	1	0	0	0	0	0	0	0	3081	696	24	2		2	CD99L2	23	149964083	Intron	SNP	C	TCGA-73-4677-01A-01D-1265-08	2039236	149964083	5306477	593	165263											
MAGEA3	4102	broad.mit.edu	37	chrX	151935925	151935925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagtcctcataggattggCtccagagagggtagttcatg	14	7	2	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151935925	A	A	151935925	3	1	211	1	0	0	0	0	1	0	0	0	9257	797	28	3	706	3	MAGEA3	23	151935925	Missense_Mutation	SNP	C	TCGA-73-4677-01A-01D-1265-08	1971842	151935925	3334635	594	165264											
VAMP7	6845	broad.mit.edu	37	chrX	155128066	155128066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgattaaaaaaaaaatGtaaaggggccattttagggt	9	5	0	1			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155128066	T	T	155128066	1	4	211	0	1	0	0	0	0	0	0	0	17244	1392	48	3		3	VAMP7	23	155128066	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08	3192141	155128066	142494	595	165265											
USP9Y	8287	broad.mit.edu	37	chrY	14928329	14928329	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgatagcagatgctgttGttctccctcagattactata	8	9	3	3			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14928329	T	T	14928329	1	4	211	0	1	0	0	0	0	0	0	0	17218	1392	48	3		3	USP9Y	24	14928329	Intron	SNP	G	TCGA-73-4677-01A-01D-1265-08		14928329	44445237	596	165266											
ATAD3C	219293	broad.mit.edu	37	chr1	1391254	1391254	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgtacaggcacatcctGctgtacgggccaccaggcac	12	15	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1391254	T	T	1391254	2	4	212	1	0	0	0	0	0	0	0	1	1079	1306	46	3		3	ATAD3C	1	1391254	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08		1391254	247859367	1	165267											
LRRC47	57470	broad.mit.edu	37	chr1	3701699	3701699	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagcaggggccctttgacGgcacggagctcgtgggtggc	17	11	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3701699	T	T	3701699	2	4	212	1	0	0	0	0	0	0	0	1	9091	1103	39	1		1	LRRC47	1	3701699	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	2310445	3701699	245548922	2	165268											
ACOT7	11332	broad.mit.edu	37	chr1	6324699	6324699	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctgtcgcttcgccttcatCtgcaggtaccgccctttgcc	8	18	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6324699	T	T	6324699	2	4	212	1	0	0	0	0	0	0	0	1	155	912	32	4		4	ACOT7	1	6324699	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	2623000	6324699	242925922	3	165269											
VPS13D	55187	broad.mit.edu	37	chr1	12406730	12406730	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtatgattttcctgttGtcattgtgtttattgcgtat	9	4	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12406730	A	A	12406730	1	1	212	0	1	0	0	0	0	0	0	0	17319	1392	48	4		4	VPS13D	1	12406730	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	6082031	12406730	236843891	4	165270											
RSC1A1	6248	broad.mit.edu	37	chr1	15988127	15988127	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgctggctttactttgcaGgaagctcttggagctttgca	12	9	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15988127	T	T	15988127	3	4	212	1	0	0	0	0	1	0	0	0	13809	991	35	2	1766	2	RSC1A1	1	15988127	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	3581397	15988127	233262494	5	165271											
SPEN	23013	broad.mit.edu	37	chr1	16264106	16264106	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctctccacacctgacttCccagagacccgtggatatgg	8	15	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16264106	A	A	16264106	3	1	212	1	0	0	0	0	1	0	0	0	15156	855	30	3	10521	3	SPEN	1	16264106	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	275979	16264106	232986515	6	165272											
UBR4	23352	broad.mit.edu	37	chr1	19499434	19499434	+	Frame_Shift_Del	DEL	G	-	-													ggtaatctcagacgacttatGaggatcagtctcagcagcca							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19499434	-	-	19499434	7	5	212	1	0	1	0	1	0	0	0	0	17030	1290	45	0	12434	0	UBR4	1	19499434	Frame_Shift_Del	DEL	G	TCGA-75-5122-01A-01D-1753-08	3235328	19499434	229751187	7	165273											
UBR4	23352	broad.mit.edu	37	chr1	19513906	19513906	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggatcccgcaatcaatatGctgattaccatggggataac	10	9	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19513906	A	A	19513906	1	1	212	0	1	0	0	0	0	0	0	0	17030	1334	46	4		4	UBR4	1	19513906	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	14472	19513906	229736715	8	165274											
PIGV	55650	broad.mit.edu	37	chr1	27124066	27124066	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttctaggttctcaccaggTttttgggctcctccactcct	7	13	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27124066	C	C	27124066	3	2	212	1	0	0	0	0	1	0	0	0	11996	1725	60	5	1223	5	PIGV	1	27124066	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	7610160	27124066	222126555	9	165275											
GPATCH3	63906	broad.mit.edu	37	chr1	27224092	27224092	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggggagtccccacattcccTctgggcatcagcactggtgg	13	13	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27224092	A	A	27224092	3	1	212	1	0	0	0	0	1	0	0	0	6657	1548	54	5	1025	5	GPATCH3	1	27224092	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	100026	27224092	222026529	10	165276											
RBBP4	5928	broad.mit.edu	37	chr1	33123195	33123195	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taggaatcttaaaggtgaaaGaagtaaagatgtgtgggtca	13	2	2	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33123195	A	A	33123195	1	1	212	0	1	0	0	0	0	0	0	0	13209	957	33	4		4	RBBP4	1	33123195	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	5899103	33123195	216127426	11	165277											
RSPO1	284654	broad.mit.edu	37	chr1	38082378	38082378	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcaggcatgagaaggcgGctgtggagagaacctcacct	16	9	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38082378	A	A	38082378	1	1	212	0	1	0	0	0	0	0	0	0	13820	1218	42	4		4	RSPO1	1	38082378	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	4959183	38082378	211168243	12	165278											
MACF1	23499	broad.mit.edu	37	chr1	39798795	39798795	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaacaagcacacactcttGagactgaatatattcatgat	6	8	2	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39798795	C	C	39798795	3	2	212	1	0	0	0	0	1	0	0	0	9232	1291	45	4	6626	4	MACF1	1	39798795	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1716417	39798795	209451826	13	165279											
MACF1	23499	broad.mit.edu	37	chr1	39799732	39799732	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacagaggtcttttggagaGagaggaggccgttcgtttgt	16	5	1	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39799732	C	C	39799732	3	2	212	1	0	0	0	0	1	0	0	0	9232	942	33	4	7563	4	MACF1	1	39799732	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	937	39799732	209450889	14	165280											
FAAH	2166	broad.mit.edu	37	chr1	46870828	46870828	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcacctacaaggtatgctCtgcctcagcgccaggcctcc	8	17	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46870828	G	G	46870828	1	3	212	0	1	0	0	0	0	0	0	0	5399	928	32	4		4	FAAH	1	46870828	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	7071096	46870828	202379793	15	165281											
LRRC7	57554	broad.mit.edu	37	chr1	70505615	70505615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttatctttatattgtggGgaaaatggatcataatagtt	8	2	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70505615	T	T	70505615	1	4	212	0	1	0	0	0	0	0	0	0	9107	1247	43	2		2	LRRC7	1	70505615	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	23634787	70505615	178745006	16	165282											
TYW3	127253	broad.mit.edu	37	chr1	75199007	75199007	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcagccggaagggcagtgttGacgaggatgtggtagagctt	17	6	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75199007	T	T	75199007	3	4	212	1	0	0	0	0	1	0	0	0	16946	1290	45	3	81	3	TYW3	1	75199007	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	4693392	75199007	174051614	17	165283											
LHX8	431707	broad.mit.edu	37	chr1	75596381	75596381	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgagcccgtatacagctCtgccatctctgaggggttat	12	10	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75596381	T	T	75596381	1	4	212	0	1	0	0	0	0	0	0	0	8848	928	32	4		4	LHX8	1	75596381	5'UTR	SNP	C	TCGA-75-5122-01A-01D-1753-08	397374	75596381	173654240	18	165284											
BTBD8	284697	broad.mit.edu	37	chr1	92573634	92573634	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtctcttaccagcacGgtggttttcaaactctggtt	9	11	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92573634	C	C	92573634	1	2	212	0	1	0	0	0	0	0	0	0	1557	1131	39	4		4	BTBD8	1	92573634	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	16977253	92573634	156676987	19	165285											
CSDE1	7812	broad.mit.edu	37	chr1	115266602	115266602	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagtaaatggtgggatcaGcttcctcagtaatgccattc	10	9	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115266602	C	C	115266602	3	2	212	1	0	0	0	0	1	0	0	0	3963	971	34	4	641	4	CSDE1	1	115266602	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	22692968	115266602	133984019	20	165286											
HAO2	51179	broad.mit.edu	37	chr1	119927727	119927727	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cattacaagaggcaaatttcCttccctcttttctcctttcc	3	14	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119927727	T	T	119927727	1	4	212	0	1	0	0	0	0	0	0	0	7018	696	24	4		4	HAO2	1	119927727	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	4661125	119927727	129322894	21	165287											
TCHHL1	126637	broad.mit.edu	37	chr1	152060548	152060548	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccagtcagtgttgccccGttactgtcctcactggcata	9	14	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152060548	A	A	152060548	2	1	212	1	0	0	0	0	0	0	0	1	15823	1136	40	4		4	TCHHL1	1	152060548	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	32132821	152060548	97190073	22	165288											
SPTA1	6708	broad.mit.edu	37	chr1	158609495	158609495	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctggaaatagagaaataaGcaataaagctgccaggtgaa	11	6	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158609495	C	C	158609495	1	2	212	0	1	0	0	0	0	0	0	0	15234	986	34	4		4	SPTA1	1	158609495	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	6548947	158609495	90641126	23	165289											
ATP1A2	477	broad.mit.edu	37	chr1	160093741	160093741	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctccttaccagctatatctGggtgtggtgctggcagctgt	12	10	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160093741	C	C	160093741	2	2	212	1	0	0	0	0	0	0	0	1	1133	1335	47	4		4	ATP1A2	1	160093741	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	1484246	160093741	89156880	24	165290											
SLAMF1	6504	broad.mit.edu	37	chr1	160604481	160604481	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggttgctcacggtgcagaTgtagatattgtcagcatgct	13	7	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160604481	C	C	160604481	3	2	212	1	0	0	0	0	1	0	0	0	14480	1464	51	5	405	5	SLAMF1	1	160604481	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	510740	160604481	88646140	25	165291											
C1orf129	80133	broad.mit.edu	37	chr1	170934303	170934303	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaacaggaaatgctcgtGtggatgagtaaagatagctc	11	7	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170934303	T	T	170934303	2	4	212	1	0	0	0	0	0	0	0	1	2016	1364	48	3		3	C1orf129	1	170934303	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	10329822	170934303	78316318	26	165292											
FAM129A	116496	broad.mit.edu	37	chr1	184863276	184863276	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtatctctccttccacttcTttatgtcttcagaaaattgt	4	11	4	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184863276	G	G	184863276	3	3	212	1	0	0	0	0	1	0	0	0	5482	1609	56	5	2583	5	FAM129A	1	184863276	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	13928973	184863276	64387345	27	165293											
CNTN2	6900	broad.mit.edu	37	chr1	205033425	205033425	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagggtgacagtacttttctCtgtggctctcccctttcctt	8	12	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205033425	A	A	205033425	1	1	212	0	1	0	0	0	0	0	0	0	3673	928	32	3		3	CNTN2	1	205033425	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	20170149	205033425	44217196	28	165294											
CD55	1604	broad.mit.edu	37	chr1	207504605	207504607	+	In_Frame_Del	DEL	GAA	-	-													attgtactgtgaataatgatGaaggagagtggagtggccca							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	207504607	-	-	207504605	7	5	212	1	0	1	0	1	0	0	0	0	3054	1291	45	0	839	0	CD55	1	207504605	In_Frame_Del	DEL	GAA	TCGA-75-5122-01A-01D-1753-08	2471180	207504605	41746016	29	165295											
ZP4	57829	broad.mit.edu	37	chr1	238050095	238050095	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agatgctgtcacgagtgacaGagccacggctcccatttttc	10	12	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238050095	A	A	238050095	3	1	212	1	0	0	0	0	1	0	0	0	18347	942	33	4	835	4	ZP4	1	238050095	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	30545490	238050095	11200526	30	165296											
SMYD3	64754	broad.mit.edu	37	chr1	246078979	246078979	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagggaagcgctgaaacatcTgctgtgctcatttctttaac	10	9	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246078979	A	A	246078979	1	1	212	0	1	0	0	0	0	0	0	0	14937	1595	55	5		5	SMYD3	1	246078979	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	8028884	246078979	3171642	31	165297											
NLRP3	114548	broad.mit.edu	37	chr1	247597434	247597434	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcctctcgcatgagtGctgcttcgacatctccttgg	11	13	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247597434	C	C	247597434	3	2	212	1	0	0	0	0	1	0	0	0	10573	1319	46	4	2375	4	NLRP3	1	247597434	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1518455	247597434	1653187	32	165298											
OR2T34	127068	broad.mit.edu	37	chr1	248737569	248737569	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcatggtaatgggggtgaGcaacaaaccatcaaccattc	10	10	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248737569	T	T	248737569	3	4	212	1	0	0	0	0	1	0	0	0	11119	971	34	3	470	3	OR2T34	1	248737569	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1140135	248737569	513052	33	165299											
NCOA1	8648	broad.mit.edu	37	chr2	24985431	24985431	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaacaacacagttaattgCtaagcttttcatttttgctg	6	7	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24985431	T	T	24985431	1	4	212	0	1	0	0	0	0	0	0	0	10323	812	28	4		4	NCOA1	2	24985431	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08		24985431	218213942	34	165300											
TRIM54	57159	broad.mit.edu	37	chr2	27505721	27505721	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaccagtggtgatcctgcCctgccaacacaacctgtgcc	8	16	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27505721	T	T	27505721	3	4	212	1	0	0	0	0	1	0	0	0	16653	623	22	4	124	4	TRIM54	2	27505721	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	2520290	27505721	215693652	35	165301											
LTBP1	4052	broad.mit.edu	37	chr2	33500152	33500152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaggagggtactaactGcataggtaatggcagcattc	13	7	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33500152	T	T	33500152	3	4	212	1	0	0	0	0	1	0	0	0	9160	1319	46	3	2985	3	LTBP1	2	33500152	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	5994431	33500152	209699221	36	165302											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44016899	44016899	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaacctgtaagtacacaGgagtgtccctaggaggaata	12	7	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44016899	A	A	44016899	1	1	212	0	1	0	0	0	0	0	0	0	4887	1015	35	4		4	DYNC2LI1	2	44016899	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	10516747	44016899	199182474	37	165303											
NRXN1	9378	broad.mit.edu	37	chr2	51255078	51255078	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcacgctgtgccaggcgcCgtcgttaaccggcgtgtcgg	16	14	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51255078	T	T	51255078	3	4	212	1	0	0	0	0	1	0	0	0	10760	652	23	4	4664	4	NRXN1	2	51255078	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	7238179	51255078	191944295	38	165304											
MTIF2	4528	broad.mit.edu	37	chr2	55467349	55467349	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatcaatgaagtagcacaacGattacattataatcatttat	5	6	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55467349	T	T	55467349	1	4	212	0	1	0	0	0	0	0	0	0	10028	1073	37	3		3	MTIF2	2	55467349	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	4212271	55467349	187732024	39	165305											
ETAA1	54465	broad.mit.edu	37	chr2	67636995	67636995	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattaaagcacatattgaatGactttataggctataaaagt	6	4	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67636995	C	C	67636995	1	2	212	0	1	0	0	0	0	0	0	0	5309	1305	45	4		4	ETAA1	2	67636995	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	12169646	67636995	175562378	40	165306											
ANXA4	307	broad.mit.edu	37	chr2	70015217	70015217	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtactgtcaaagctgcttCaggattcaatgccatggaag	11	8	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70015217	T	T	70015217	3	4	212	1	0	0	0	0	1	0	0	0	720	838	29	4	47	4	ANXA4	2	70015217	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	2378222	70015217	173184156	41	165307											
CLEC4F	165530	broad.mit.edu	37	chr2	71038446	71038446	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttcaagaattttgtcaAtattggagcaatctgctctt	8	7	4	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71038446	G	G	71038446	1	3	212	0	1	0	0	0	0	0	0	0	3548	116	4	5		5	CLEC4F	2	71038446	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	1023229	71038446	172160927	42	165308											
NAT8B	51471	broad.mit.edu	37	chr2	73928246	73928246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggctgaacacgagggCcagaatccaggagccagaga	15	10	0	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73928246	A	A	73928246	3	1	212	1	0	0	0	0	1	0	0	0	10274	739	26	3	500	3	NAT8B	2	73928246	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	2889800	73928246	169271127	43	165309											
TEKT4	150483	broad.mit.edu	37	chr2	95541262	95541262	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagacctgggtaggacCagcctggtctcggcgttcta	12	14	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95541262	A	A	95541262	1	1	212	0	1	0	0	0	0	0	0	0	15877	609	21	2		2	TEKT4	2	95541262	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	21613016	95541262	147658111	44	165310											
VWA3B	200403	broad.mit.edu	37	chr2	98914297	98914297	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttataactcagcatggccaGaaagatggcacaagcctaag	10	9	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98914297	A	A	98914297	1	1	212	0	1	0	0	0	0	0	0	0	17368	957	33	4		4	VWA3B	2	98914297	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	3373035	98914297	144285076	45	165311											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105924096	105924096	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctccggggcccgccagcagGaactcctgtctccctatcct	9	19	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105924096	A	A	105924096	2	1	212	1	0	0	0	0	0	0	0	1	15947	1165	41	4		4	TGFBRAP1	2	105924096	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	7009799	105924096	137275277	46	165312											
KCNJ3	3760	broad.mit.edu	37	chr2	155711659	155711659	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttcagttccgggcaactCagaagaaaaactggtatcta	9	8	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155711659	G	G	155711659	4	3	212	1	0	0	0	0	0	1	0	0	8122	838	29	4	1350	4	KCNJ3	2	155711659	Nonsense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	49787563	155711659	87487714	47	165313											
NOSTRIN	115677	broad.mit.edu	37	chr2	169717326	169717326	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatactcatagctatgtgAaaatatctcggcctttttta	6	8	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169717326	G	G	169717326	3	3	212	1	0	0	0	0	1	0	0	0	10641	247	9	5	1430	5	NOSTRIN	2	169717326	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	14005667	169717326	73482047	48	165314											
ITGA4	3676	broad.mit.edu	37	chr2	182359493	182359495	+	In_Frame_Del	DEL	ACA	-	-													aaatcgttaagtatgtttggAcagtctatatcaggacaaat							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182359495	-	-	182359493	7	5	212	1	0	1	0	1	0	0	0	0	7948	262	10	0	1339	0	ITGA4	2	182359493	In_Frame_Del	DEL	ACA	TCGA-75-5122-01A-01D-1753-08	12642167	182359493	60839880	49	165315											
ITGAV	3685	broad.mit.edu	37	chr2	187506321	187506321	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatggtttcaatggtaagAtcaaagtttagcagctacag	11	5	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187506321	G	G	187506321	1	3	212	0	1	0	0	0	0	0	0	0	7958	348	12	5		5	ITGAV	2	187506321	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	5146828	187506321	55693052	50	165316											
ANKRD44	91526	broad.mit.edu	37	chr2	198051747	198051747	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccacagtatctcttacCagagtattcacatcttcagt	4	11	4	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198051747	A	A	198051747	2	1	212	1	0	0	0	0	0	0	0	1	672	608	21	2		2	ANKRD44	2	198051747	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	10545426	198051747	45147626	51	165317											
SGOL2	151246	broad.mit.edu	37	chr2	201407368	201407368	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtaaacagtgcaagttgAtgcgtcttccatttgcaagg	10	7	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201407368	G	G	201407368	3	3	212	1	0	0	0	0	1	0	0	0	14330	333	12	5	468	5	SGOL2	2	201407368	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	3355621	201407368	41792005	52	165318											
SMARCAL1	50485	broad.mit.edu	37	chr2	217332865	217332865	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcaaagtgagaccgatGgcttccggaagcattgctga	12	10	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	217332865	C	C	217332865	1	2	212	0	1	0	0	0	0	0	0	0	14887	1363	47	4		4	SMARCAL1	2	217332865	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	15925497	217332865	25866508	53	165319											
SPEG	10290	broad.mit.edu	37	chr2	220337808	220337808	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgagcctgtgcagctGctggagcacggtgagcctgg	15	12	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220337808	A	A	220337808	2	1	212	1	0	0	0	0	0	0	0	1	15154	1306	46	4		4	SPEG	2	220337808	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	3004943	220337808	22861565	54	165320											
ANKMY1	51281	broad.mit.edu	37	chr2	241494531	241494531	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagtgccttcagtgacTgctgagcacaacccccgagc	11	15	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241494531	G	G	241494531	1	3	212	0	1	0	0	0	0	0	0	0	634	1595	55	5		5	ANKMY1	2	241494531	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	21156723	241494531	1704842	55	165321											
TBC1D5	9779	broad.mit.edu	37	chr3	17208218	17208218	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaacttatgtgaatgtgctCcctttgagttaatgtaacat	9	6	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17208218	T	T	17208218	1	4	212	0	1	0	0	0	0	0	0	0	15745	870	30	4		4	TBC1D5	3	17208218	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08		17208218	180814212	56	165322											
ARPP21	10777	broad.mit.edu	37	chr3	35785425	35785425	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtacaacgctcagaggaGtcaacagatgccacaggcag	11	11	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35785425	T	T	35785425	3	4	212	1	0	0	0	0	1	0	0	0	982	1029	36	3	2075	3	ARPP21	3	35785425	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	18577207	35785425	162237005	57	165323											
TNNC1	7134	broad.mit.edu	37	chr3	52486123	52486123	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggaggagggggctcaccGtcctcgtccacctcatcgat	14	13	2	0	rs150881554	byFrequency	TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52486123	A	A	52486123	2	1	212	1	0	0	0	0	0	0	0	1	16447	1159	40	4		4	TNNC1	3	52486123	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	16700698	52486123	145536307	58	165324											
CGGBP1	8545	broad.mit.edu	37	chr3	88104803	88104803	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggcttccaggcacattttCacaaagtcctggataacact	7	11	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88104803	A	A	88104803	2	1	212	1	0	0	0	0	0	0	0	1	3332	813	29	3		3	CGGBP1	3	88104803	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	35618680	88104803	109917627	59	165325											
MYH15	22989	broad.mit.edu	37	chr3	108127031	108127031	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catatagtaaataaacatttGaatacgtgtccttttgttgg	7	5	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108127031	C	C	108127031	1	2	212	0	1	0	0	0	0	0	0	0	10128	1305	45	4		4	MYH15	3	108127031	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	20022228	108127031	89895399	60	165326											
DPPA2	151871	broad.mit.edu	37	chr3	109023457	109023457	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctgcatgaaactgcaggCgtacccaaccctttgtgtct	9	13	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109023457	T	T	109023457	3	4	212	1	0	0	0	0	1	0	0	0	4774	768	27	4	185	4	DPPA2	3	109023457	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	896426	109023457	88998973	61	165327											
DPPA2	151871	broad.mit.edu	37	chr3	109027177	109027177	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgagtattcagtaaaccGctagggctgtaaggactttt	11	7	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109027177	T	T	109027177	1	4	212	0	1	0	0	0	0	0	0	0	4774	1102	38	3		3	DPPA2	3	109027177	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	3720	109027177	88995253	62	165328											
ZBTB20	26137	broad.mit.edu	37	chr3	114069076	114069076	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaccttgccttcccacagcCccctcagcccctgctgccag	6	21	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114069076	T	T	114069076	1	4	212	0	1	0	0	0	0	0	0	0	17655	638	22	4		4	ZBTB20	3	114069076	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	5041899	114069076	83953354	63	165329											
HEG1	57493	broad.mit.edu	37	chr3	124738228	124738228	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagactgtacagtagagtctGagaactgggtcaacactgaa	11	8	2	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124738228	A	A	124738228	3	1	212	1	0	0	0	0	1	0	0	0	7111	1294	45	4	2731	4	HEG1	3	124738228	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	10669152	124738228	73284202	64	165330											
HEG1	57493	broad.mit.edu	37	chr3	124738360	124738360	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cacctctcatgggtgcgactGacctagacacagtctcagtc	9	14	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124738360	A	A	124738360	3	1	212	1	0	0	0	0	1	0	0	0	7111	1294	45	4	2863	4	HEG1	3	124738360	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	132	124738360	73284070	65	165331											
C3orf37	56941	broad.mit.edu	37	chr3	129009784	129009784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagtgcggtggctcacGcctgtgatcccagcactttg	13	14	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129009784	T	T	129009784	1	4	212	0	1	0	0	0	0	0	0	0	2249	1102	38	3		3	C3orf37	3	129009784	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	4271424	129009784	69012646	66	165332											
CCRL1	51554	broad.mit.edu	37	chr3	132319791	132319791	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaatgacaatgctaggTgcattcccattttcccccgc	7	13	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132319791	A	A	132319791	3	1	212	1	0	0	0	0	1	0	0	0	2979	1696	59	5	552	5	CCRL1	3	132319791	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	3310007	132319791	65702639	67	165333											
NLGN1	22871	broad.mit.edu	37	chr3	173322869	173322869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatatttaaatatatatgtcCcgactgaggatggtgagttt	9	4	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173322869	A	A	173322869	3	1	212	1	0	0	0	0	1	0	0	0	10556	623	22	2	483	2	NLGN1	3	173322869	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	41003078	173322869	24699561	68	165334											
EIF4G1	1981	broad.mit.edu	37	chr3	184049592	184049592	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtctgctattctgcaaTtatttgtaagaggaaccagg	11	7	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184049592	A	A	184049592	3	1	212	1	0	0	0	0	1	0	0	0	5078	1493	52	5	4586	5	EIF4G1	3	184049592	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	10726723	184049592	13972838	69	165335											
MSX1	4487	broad.mit.edu	37	chr4	4864799	4864799	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctggccccttccagcgcGccgcgctgcctgtggcgccc	12	21	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4864799	A	A	4864799	3	1	212	1	0	0	0	0	1	0	0	0	9989	1087	38	4	847	4	MSX1	4	4864799	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08		4864799	186289477	70	165336											
PDS5A	23244	broad.mit.edu	37	chr4	39871068	39871068	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagaccacagttttccattCttttcacctgttgactatag	7	10	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39871068	G	G	39871068	3	3	212	1	0	0	0	0	1	0	0	0	11785	912	32	4	1610	4	PDS5A	4	39871068	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	35006269	39871068	151283208	71	165337											
KIAA1211	57482	broad.mit.edu	37	chr4	57190403	57190403	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgcagagaacagctgaaaaAggccaatactcttcctacgt	9	11	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57190403	T	T	57190403	3	4	212	1	0	0	0	0	1	0	0	0	8285	72	3	5	3538	5	KIAA1211	4	57190403	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	17319335	57190403	133963873	72	165338											
TMPRSS11B	132724	broad.mit.edu	37	chr4	69097145	69097145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggtatctttgattacgCattataaaaaaatatatcat	5	5	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69097145	A	A	69097145	1	1	212	0	1	0	0	0	0	0	0	0	16363	725	25	3		3	TMPRSS11B	4	69097145	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	11906742	69097145	122057131	73	165339											
UGT2B11	10720	broad.mit.edu	37	chr4	70066243	70066243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgataaatatcacagttGccacacaggccagcagaaac	8	10	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70066243	T	T	70066243	3	4	212	1	0	0	0	0	1	0	0	0	17083	1319	46	3	88	3	UGT2B11	4	70066243	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	969098	70066243	121088033	74	165340											
UGT2B11	10720	broad.mit.edu	37	chr4	70079941	70079941	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggagactgtacacaaacCgtatgttaagtagcgcagcc	11	10	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70079941	T	T	70079941	3	4	212	1	0	0	0	0	1	0	0	0	17083	652	23	4	1113	4	UGT2B11	4	70079941	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	13698	70079941	121074335	75	165341											
SHROOM3	57619	broad.mit.edu	37	chr4	77661433	77661433	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtcaacaccaaggcagaaGaccctgggaggaaagccgct	12	12	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77661433	C	C	77661433	3	2	212	1	0	0	0	0	1	0	0	0	14408	942	33	4	2125	4	SHROOM3	4	77661433	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	7581492	77661433	113492843	76	165342											
FRAS1	80144	broad.mit.edu	37	chr4	79366688	79366688	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcaggtgatcgttttgGccctgaaactgccagtgacc	12	10	0	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79366688	C	C	79366688	3	2	212	1	0	0	0	0	1	0	0	0	6102	1203	42	4	5844	4	FRAS1	4	79366688	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1705255	79366688	111787588	77	165343											
MEPE	56955	broad.mit.edu	37	chr4	88767657	88767657	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtcacctgtgagttgatGtagaggagagccacctgaca	12	10	1	5			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88767657	A	A	88767657	1	1	212	0	1	0	0	0	0	0	0	0	9571	1392	48	4		4	MEPE	4	88767657	3'UTR	SNP	G	TCGA-75-5122-01A-01D-1753-08	9400969	88767657	102386619	78	165344											
RNF150	57484	broad.mit.edu	37	chr4	141888915	141888915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctcacatatttctgcaaGttccgggttccgatggtgat	11	10	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141888915	T	T	141888915	3	4	212	1	0	0	0	0	1	0	0	0	13562	1020	36	3	743	3	RNF150	4	141888915	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	53121258	141888915	49265361	79	165345											
GYPA	2993	broad.mit.edu	37	chr4	145039892	145039892	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagagaaatgatgggcaagTtgtaccctttctcctataaa	8	8	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145039892	C	C	145039892	2	2	212	1	0	0	0	0	0	0	0	1	6973	1722	60	5		5	GYPA	4	145039892	Silent	SNP	T	TCGA-75-5122-01A-01D-1753-08	3150977	145039892	46114384	80	165346											
SH3D19	152503	broad.mit.edu	37	chr4	152095909	152095909	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaaagctgatgagatcgaTgtccaccaagggcttgctct	10	10	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152095909	C	C	152095909	3	2	212	1	0	0	0	0	1	0	0	0	14362	1464	51	5	1825	5	SH3D19	4	152095909	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	7056017	152095909	39058367	81	165347											
GRIA2	2891	broad.mit.edu	37	chr4	158233867	158233867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtgctggattctgctgCtgaaaagaaatggcaagtga	13	6	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158233867	A	A	158233867	3	1	212	1	0	0	0	0	1	0	0	0	6834	797	28	3	520	3	GRIA2	4	158233867	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	6137958	158233867	32920409	82	165348											
C4orf45	152940	broad.mit.edu	37	chr4	159928477	159928477	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactggacatctcatcccaGgccctccacccaaggatgat	7	17	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159928477	T	T	159928477	1	4	212	0	1	0	0	0	0	0	0	0	2296	1015	35	2		2	C4orf45	4	159928477	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	1694610	159928477	31225799	83	165349											
TKTL2	84076	broad.mit.edu	37	chr4	164394375	164394375	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaagttgtagtgggagGcaaaagcaaaagcctcccac	11	10	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164394375	A	A	164394375	3	1	212	1	0	0	0	0	1	0	0	0	16059	1203	42	4	1372	4	TKTL2	4	164394375	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	4465898	164394375	26759901	84	165350											
TLL1	7092	broad.mit.edu	37	chr4	167020587	167020587	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccttccagacatttgaagtgGaggaagaagcagactgtggc	13	8	0	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167020587	C	C	167020587	3	2	212	1	0	0	0	0	1	0	0	0	16068	1175	41	4	2893	4	TLL1	4	167020587	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	2626212	167020587	24133689	85	165351											
FBXO8	26269	broad.mit.edu	37	chr4	175162376	175162376	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtagttcactccctaaggCagaaagacaagtctacataa	7	9	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175162376	A	A	175162376	1	1	212	0	1	0	0	0	0	0	0	0	5818	725	25	3		3	FBXO8	4	175162376	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	8141789	175162376	15991900	86	165352											
FAT1	2195	broad.mit.edu	37	chr4	187539532	187539532	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtattccctttgaccagGctgtaaagaacagtcccact	9	11	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187539532	C	C	187539532	3	2	212	1	0	0	0	0	1	0	0	0	5746	1194	42	4	5630	4	FAT1	4	187539532	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	12377156	187539532	3614744	87	165353											
TRIML1	339976	broad.mit.edu	37	chr4	189063534	189063534	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagagaacatgaggaagctGaggaacaatgagatcaaact	11	5	1	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189063534	A	A	189063534	2	1	212	1	0	0	0	0	0	0	0	1	16675	1277	45	4		4	TRIML1	4	189063534	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	1524002	189063534	2090742	88	165354											
IRX1	79192	broad.mit.edu	37	chr5	3601088	3601088	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcttgtctcgctgtgtttCccatgcagctctctggcccc	8	16	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3601088	A	A	3601088	1	1	212	0	1	0	0	0	0	0	0	0	7913	870	30	3		3	IRX1	5	3601088	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08		3601088	177314172	89	165355											
ADAMTS16	170690	broad.mit.edu	37	chr5	5237160	5237160	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaataaagtcaaagatgGgactccatgctcggaggata	11	7	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5237160	A	A	5237160	3	1	212	1	0	0	0	0	1	0	0	0	261	1232	43	4	2156	4	ADAMTS16	5	5237160	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1636072	5237160	175678100	90	165356											
TRIO	7204	broad.mit.edu	37	chr5	14479323	14479323	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtactcgtgtattctaatcGaatttcccattgttataacc	6	9	1	0	rs62345860	by1000genomes	TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14479323	C	C	14479323	1	2	212	0	1	0	0	0	0	0	0	0	16677	1073	37	4		4	TRIO	5	14479323	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	9242163	14479323	166435937	91	165357											
CDH18	1016	broad.mit.edu	37	chr5	19473694	19473694	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attcctcaaggctgtgatgtCaaaggcctctgtgtcttcct	9	11	4	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473694	T	T	19473694	3	4	212	1	0	0	0	0	1	0	0	0	3133	826	29	4	362	4	CDH18	5	19473694	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	4994371	19473694	161441566	92	165358											
PRDM9	56979	broad.mit.edu	37	chr5	23523134	23523134	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaggttctttgcatgaaCacggaactcctatttagaga	8	9	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23523134	G	G	23523134	1	3	212	0	1	0	0	0	0	0	0	0	12569	493	17	4		4	PRDM9	5	23523134	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	4049440	23523134	157392126	93	165359											
OSMR	9180	broad.mit.edu	37	chr5	38885462	38885462	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tatggacagaagtacttgagGagcccaaggacttttcttgt	11	7	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38885462	A	A	38885462	3	1	212	1	0	0	0	0	1	0	0	0	11386	1175	41	4	733	4	OSMR	5	38885462	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	15362328	38885462	142029798	94	165360											
C7	730	broad.mit.edu	37	chr5	40979944	40979944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacacccttactggtagggaCagctgtactctgcctgcctc	9	14	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40979944	A	A	40979944	3	1	212	1	0	0	0	0	1	0	0	0	2400	477	17	3	2349	3	C7	5	40979944	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	2094482	40979944	139935316	95	165361											
PLCXD3	345557	broad.mit.edu	37	chr5	41475705	41475705	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taggcctcttcaggtcccttCaggtctcttcaggtctctgt	9	13	6	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41475705	G	G	41475705	1	3	212	0	1	0	0	0	0	0	0	0	12138	841	29	4		4	PLCXD3	5	41475705	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	495761	41475705	139439555	96	165362											
PARP8	79668	broad.mit.edu	37	chr5	50090157	50090157	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccctgcatttattttctaCtttgcgcaggttggtaacag	8	10	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50090157	T	T	50090157	3	4	212	1	0	0	0	0	1	0	0	0	11559	565	20	4	896	4	PARP8	5	50090157	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	8614452	50090157	130825103	97	165363											
CMYA5	202333	broad.mit.edu	37	chr5	79030763	79030763	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctggcctatcagtggaaCaggtgaagtcagaaacaatc	11	8	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79030763	A	A	79030763	3	1	212	1	0	0	0	0	1	0	0	0	3622	479	17	3	6181	3	CMYA5	5	79030763	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	28940606	79030763	101884497	98	165364											
VCAN	1462	broad.mit.edu	37	chr5	82815143	82815143	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattagtgacttgtctaatCaactctttgaaattattttt	4	5	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82815143	G	G	82815143	1	3	212	0	1	0	0	0	0	0	0	0	17265	841	29	4		4	VCAN	5	82815143	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	3784380	82815143	98100117	99	165365											
SLCO6A1	133482	broad.mit.edu	37	chr5	101726745	101726745	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacgcagtttgtcaggtaCaaccctgaaagtaaatagca	9	8	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101726745	A	A	101726745	3	1	212	1	0	0	0	0	1	0	0	0	14846	478	17	3	352	3	SLCO6A1	5	101726745	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	18911602	101726745	79188515	100	165366											
PPIP5K2	23262	broad.mit.edu	37	chr5	102494220	102494220	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcacctacagacatgacctCaaaatatatgcctctgatga	6	11	2	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102494220	G	G	102494220	2	3	212	1	0	0	0	0	0	0	0	1	12434	813	29	4		4	PPIP5K2	5	102494220	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	767475	102494220	78421040	101	165367											
MEGF10	84466	broad.mit.edu	37	chr5	126755909	126755909	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccctgccaggtatgcacaAatcagcgccctgacggaaaa	9	13	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126755909	G	G	126755909	1	3	212	0	1	0	0	0	0	0	0	0	9553	29	1	5		5	MEGF10	5	126755909	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	24261689	126755909	54159351	102	165368											
FBN2	2201	broad.mit.edu	37	chr5	127728883	127728883	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacaccggctcccccaacGccaggagaaaagccattgcc	8	19	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127728883	A	A	127728883	2	1	212	1	0	0	0	0	0	0	0	1	5760	1074	38	4		4	FBN2	5	127728883	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	972974	127728883	53186377	103	165369											
ADAMTS19	171019	broad.mit.edu	37	chr5	128983511	128983511	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacctgaacatctggcCggagagtggagcctgtggag	15	10	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128983511	T	T	128983511	2	4	212	1	0	0	0	0	0	0	0	1	264	639	23	4		4	ADAMTS19	5	128983511	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	1254628	128983511	51931749	104	165370											
PCDHA1	56147	broad.mit.edu	37	chr5	140165825	140165825	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatattagataaaatgGcatgattttgaagtaagagg	11	1	0	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140165825	T	T	140165825	1	4	212	0	1	0	0	0	0	0	0	0	11613	1218	42	3		3	PCDHA1	5	140165825	5'Flank	SNP	G	TCGA-75-5122-01A-01D-1753-08	11182314	140165825	40749435	105	165371											
PCDHA12	56137	broad.mit.edu	37	chr5	140257174	140257174	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcatcatcgccatctgtgCggtgtccagcctgctggtgc	11	15	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140257174	T	T	140257174	3	4	212	1	0	0	0	0	1	0	0	0	11616	768	27	4	2119	4	PCDHA12	5	140257174	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	91349	140257174	40658086	106	165372											
PCDHB1	29930	broad.mit.edu	37	chr5	140432184	140432184	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctatcagagaccgggacattCgagtgggaggaaaagtcacc	13	9	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140432184	A	A	140432184	2	1	212	1	0	0	0	0	0	0	0	1	11628	876	31	3		3	PCDHB1	5	140432184	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	175010	140432184	40483076	107	165373											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720634	140720634	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggtggtggcggtggccgCggtctcctgcgtcttcctgg	17	13	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140720634	T	T	140720634	3	4	212	1	0	0	0	0	1	0	0	0	11648	768	27	4	2098	4	PCDHGA2	5	140720634	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	288450	140720634	40194626	108	165374											
PCDHGB6	56100	broad.mit.edu	37	chr5	140788222	140788222	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgcatccgctggtacacgActatcgcttgaccctgccac	8	16	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140788222	T	T	140788222	2	4	212	1	0	0	0	0	0	0	0	1	11661	262	10	5		5	PCDHGB6	5	140788222	Silent	SNP	A	TCGA-75-5122-01A-01D-1753-08	67588	140788222	40127038	109	165375											
PTTG1	9232	broad.mit.edu	37	chr5	159854887	159854887	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accatgggaatccagtaagtGagcaagtgcccttctggaag	12	9	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159854887	C	C	159854887	1	2	212	0	1	0	0	0	0	0	0	0	12927	1305	45	4		4	PTTG1	5	159854887	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	19066665	159854887	21060373	110	165376											
ODZ2	57451	broad.mit.edu	37	chr5	167674048	167674048	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagagattgtctacgacaGtaccgccgtcaccttcgggt	10	12	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167674048	T	T	167674048	3	4	212	1	0	0	0	0	1	0	0	0	10930	1029	36	3	6183	3	ODZ2	5	167674048	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	7819161	167674048	13241212	111	165377											
SLC34A1	6569	broad.mit.edu	37	chr5	176825194	176825194	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgagccccgctcacccccGctgccccccagggtcttcct	8	23	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176825194	A	A	176825194	2	1	212	1	0	0	0	0	0	0	0	1	14681	1074	38	4		4	SLC34A1	5	176825194	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	9151146	176825194	4090066	112	165378											
FOXC1	2296	broad.mit.edu	37	chr6	1611205	1611205	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggcggcggcggcgcttcaaGaagaaggacgcggtgaagga	19	9	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1611205	A	A	1611205	2	1	212	1	0	0	0	0	0	0	0	1	6052	933	33	4		4	FOXC1	6	1611205	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08		1611205	169503862	113	165379											
RIOK1	83732	broad.mit.edu	37	chr6	7403235	7403235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccaaatgtagggacttGttagggcctttatttctatt	9	8	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7403235	T	T	7403235	1	4	212	0	1	0	0	0	0	0	0	0	13488	1392	48	3		3	RIOK1	6	7403235	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	5792030	7403235	163711832	114	165380											
SYCP2L	221711	broad.mit.edu	37	chr6	10959066	10959066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatgcaaagaaagcacCggattgcctaataaaacttt	7	7	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10959066	A	A	10959066	3	1	212	1	0	0	0	0	1	0	0	0	15552	652	23	1	2315	1	SYCP2L	6	10959066	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	3555831	10959066	160156001	115	165381											
SCGN	10590	broad.mit.edu	37	chr6	25689777	25689777	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtaagtgtgcgtctttAtactgtgctggccatctctg	11	8	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25689777	G	G	25689777	1	3	212	0	1	0	0	0	0	0	0	0	14016	464	16	5		5	SCGN	6	25689777	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	14730711	25689777	145425290	116	165382											
BAT2	7916	broad.mit.edu	37	chr6	31602155	31602155	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatactggtgagtaaagctGagtgaaaggactatggtaga	13	4	0	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31602155	C	C	31602155	1	2	212	0	1	0	0	0	0	0	0	0	1324	1305	45	4		4	BAT2	6	31602155	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	5912378	31602155	139512912	117	165383											
GTPBP2	54676	broad.mit.edu	37	chr6	43592282	43592282	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgctgggcagcagtgacGgcatcatcctcagaggtgac	13	11	2	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43592282	A	A	43592282	2	1	212	1	0	0	0	0	0	0	0	1	6945	1103	39	4		4	GTPBP2	6	43592282	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	11990127	43592282	127522785	118	165384											
PKHD1	5314	broad.mit.edu	37	chr6	51908488	51908488	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtactggaaagagcaggaaCctgggcaatgagctggtaca	15	7	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51908488	A	A	51908488	3	1	212	1	0	0	0	0	1	0	0	0	12066	507	18	3	9675	3	PKHD1	6	51908488	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	8316206	51908488	119206579	119	165385											
COL21A1	81578	broad.mit.edu	37	chr6	55939119	55939119	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaatttcaagagtaacttaGagaagattattaaaaaatat	7	2	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55939119	C	C	55939119	1	2	212	0	1	0	0	0	0	0	0	0	3712	957	33	4		4	COL21A1	6	55939119	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	4030631	55939119	115175948	120	165386											
COL19A1	1310	broad.mit.edu	37	chr6	70890296	70890296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtacttgtgttgtacttgCatgcagttttaaaacatttg	8	5	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70890296	A	A	70890296	1	1	212	0	1	0	0	0	0	0	0	0	3708	725	25	3		3	COL19A1	6	70890296	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	14951177	70890296	100224771	121	165387											
MDN1	23195	broad.mit.edu	37	chr6	90365610	90365610	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtccgtatccacagtcctCagcctcttgtgcacacgctc	7	17	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90365610	G	G	90365610	2	3	212	1	0	0	0	0	0	0	0	1	9508	813	29	4		4	MDN1	6	90365610	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	19475314	90365610	80749457	122	165388											
CASP8AP2	9994	broad.mit.edu	37	chr6	90573714	90573714	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgaaaccactgaaagCattttgcagccttcaattga	9	8	1	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90573714	T	T	90573714	2	4	212	1	0	0	0	0	0	0	0	1	2704	709	25	4		4	CASP8AP2	6	90573714	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	208104	90573714	80541353	123	165389											
GPR63	81491	broad.mit.edu	37	chr6	97247416	97247416	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggtgttgtgggcacagcTgtactattcacggtcaagga	14	8	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97247416	A	A	97247416	2	1	212	1	0	0	0	0	0	0	0	1	6769	1567	55	5		5	GPR63	6	97247416	Silent	SNP	T	TCGA-75-5122-01A-01D-1753-08	6673702	97247416	73867651	124	165390											
MICAL1	64780	broad.mit.edu	37	chr6	109769929	109769929	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaggtgggtctgccagggActcacagcaggccaggctgc	17	11	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109769929	G	G	109769929	1	3	212	0	1	0	0	0	0	0	0	0	9662	290	10	5		5	MICAL1	6	109769929	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	12522513	109769929	61345138	125	165391											
SERINC1	57515	broad.mit.edu	37	chr6	122773169	122773169	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacgatagcaactaaagacAgcagataattcagagctgta	10	7	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122773169	G	G	122773169	3	3	212	1	0	0	0	0	1	0	0	0	14192	188	7	5	758	5	SERINC1	6	122773169	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	13003240	122773169	48341898	126	165392											
NCOA7	135112	broad.mit.edu	37	chr6	126199463	126199463	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatttaacatcactcccAataaattggtggaactgaat	6	7	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126199463	G	G	126199463	3	3	212	1	0	0	0	0	1	0	0	0	10329	130	5	5	420	5	NCOA7	6	126199463	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	3426294	126199463	44915604	127	165393											
LAMA2	3908	broad.mit.edu	37	chr6	129813279	129813279	+	Intron	DEL	G	-	-													atttttatttcttgctattaGgggtcccaatgcatctacat							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	129813279	-	-	129813279	6	5	212	0	1	1	0	1	0	0	0	0	8678	1015	35	0		0	LAMA2	6	129813279	Intron	DEL	G	TCGA-75-5122-01A-01D-1753-08	3613816	129813279	41301788	128	165394											
BCLAF1	9774	broad.mit.edu	37	chr6	136597097	136597097	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgaaggtagacttttcTcgtgcatccagattcttgtg	9	9	3	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	136597097	G	G	136597097	2	3	212	1	0	0	0	0	0	0	0	1	1388	1538	54	5		5	BCLAF1	6	136597097	Silent	SNP	T	TCGA-75-5122-01A-01D-1753-08	6783818	136597097	34517970	129	165395											
THBS2	7058	broad.mit.edu	37	chr6	169650865	169650865	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacagagccagcaggacCagcctccagaccatcctgcc	8	19	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169650865	A	A	169650865	2	1	212	1	0	0	0	0	0	0	0	1	15977	581	21	2		2	THBS2	6	169650865	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	33053768	169650865	1464202	130	165396											
SUN1	23353	broad.mit.edu	37	chr7	893192	893192	+	Frame_Shift_Del	DEL	G	-	-													caggctcgggtggaccagatGgaaggcggcgctgccgggcc							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	893192	-	-	893192	7	5	212	1	0	1	0	1	0	0	0	0	15509	1348	47	0	1421	0	SUN1	7	893192	Frame_Shift_Del	DEL	G	TCGA-75-5122-01A-01D-1753-08		893192	158245471	131	165397											
INTS1	26173	broad.mit.edu	37	chr7	1539501	1539501	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctctgccatcttcaccgtCccgggagaggacgctcacct	10	17	4	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1539501	A	A	1539501	1	1	212	0	1	0	0	0	0	0	0	0	7845	870	30	3		3	INTS1	7	1539501	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	646309	1539501	157599162	132	165398											
C7orf26	79034	broad.mit.edu	37	chr7	6641716	6641716	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatgttcattaatcttgtAtctccttaattgcagatgac	6	7	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6641716	G	G	6641716	1	3	212	0	1	0	0	0	0	0	0	0	2406	464	16	5		5	C7orf26	7	6641716	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	5102215	6641716	152496947	133	165399											
HOXA3	3200	broad.mit.edu	37	chr7	27147768	27147768	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccacatagctgccccccacGaagacggggcttccctgtat	9	16	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27147768	A	A	27147768	2	1	212	1	0	0	0	0	0	0	0	1	7360	1049	37	4		4	HOXA3	7	27147768	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	20506052	27147768	131990895	134	165400											
POU6F2	11281	broad.mit.edu	37	chr7	39503775	39503775	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttctttctcaattttcccCcccagacacaccatcctgag	4	16	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39503775	T	T	39503775	1	4	212	0	1	0	0	0	0	0	0	0	12381	638	22	4		4	POU6F2	7	39503775	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	12356007	39503775	119634888	135	165401											
ADCY1	107	broad.mit.edu	37	chr7	45743383	45743383	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	catcctgaccccgcctggttGtggtggtgcatcctgttgcg	13	13	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45743383	C	C	45743383	1	2	212	0	1	0	0	0	0	0	0	0	292	1392	48	4		4	ADCY1	7	45743383	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	6239608	45743383	113395280	136	165402											
PKD1L1	168507	broad.mit.edu	37	chr7	47882626	47882626	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgcatatagctgatggccCggcagggaagcttcttgcag	13	11	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47882626	T	T	47882626	2	4	212	1	0	0	0	0	0	0	0	1	12059	639	23	4		4	PKD1L1	7	47882626	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	2139243	47882626	111256037	137	165403											
ABCA13	154664	broad.mit.edu	37	chr7	48547627	48547627	+	Frame_Shift_Del	DEL	A	-	-													tacaggatgtactggttcacAaacttcctatatgacatggt							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48547627	-	-	48547627	7	5	212	1	0	1	0	1	0	0	0	0	31	117	5	0	13533	0	ABCA13	7	48547627	Frame_Shift_Del	DEL	A	TCGA-75-5122-01A-01D-1753-08	665001	48547627	110591036	138	165404											
ZPBP	11055	broad.mit.edu	37	chr7	50070836	50070836	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctcaaaagaaatattAtaaatgctattgcagggagc	7	6	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50070836	G	G	50070836	2	3	212	1	0	0	0	0	0	0	0	1	18348	456	16	5		5	ZPBP	7	50070836	Silent	SNP	A	TCGA-75-5122-01A-01D-1753-08	1523209	50070836	109067827	139	165405											
GRB10	2887	broad.mit.edu	37	chr7	50663155	50663155	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagatctggaaatttttAattttctggtgatgacacag	10	4	2	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50663155	C	C	50663155	3	2	212	1	0	0	0	0	1	0	0	0	6822	358	13	5	175	5	GRB10	7	50663155	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	592319	50663155	108475508	140	165406											
ZNF716	441234	broad.mit.edu	37	chr7	57522295	57522295	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaacctggtctccctgggtGaggaaaacttcaatacacaa	9	10	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57522295	A	A	57522295	1	1	212	0	1	0	0	0	0	0	0	0	18247	1305	45	4		4	ZNF716	7	57522295	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	6859140	57522295	101616368	141	165407											
ANKIB1	54467	broad.mit.edu	37	chr7	91982016	91982016	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttccaatagttattaaagActttgcaccttgagtcaggc	7	9	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91982016	G	G	91982016	1	3	212	0	1	0	0	0	0	0	0	0	630	290	10	5		5	ANKIB1	7	91982016	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	34459721	91982016	67156647	142	165408											
MOGAT3	346606	broad.mit.edu	37	chr7	100841637	100841637	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggctctggcggctcaccGgacagagtcctgtgggcagg	16	13	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100841637	A	A	100841637	3	1	212	1	0	0	0	0	1	0	0	0	9790	1116	39	4	534	4	MOGAT3	7	100841637	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	8859621	100841637	58297026	143	165409											
MET	4233	broad.mit.edu	37	chr7	116412045	116412045	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagctacttttccagaaggTatatttcagtttattgttct	7	7	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116412045	C	C	116412045	5	2	212	1	0	0	0	0	0	0	1	0	9578	1652	57	5	3134	5	MET	7	116412045	Splice_Site	SNP	T	TCGA-75-5122-01A-01D-1753-08	15570408	116412045	42726618	144	165410											
AKR1B10	57016	broad.mit.edu	37	chr7	134222969	134222969	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgatccgtttccatatccaGaggaatgtgattgtcatccc	8	11	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134222969	C	C	134222969	3	2	212	1	0	0	0	0	1	0	0	0	467	933	33	4	795	4	AKR1B10	7	134222969	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	17810924	134222969	24915694	145	165411											
NUP205	23165	broad.mit.edu	37	chr7	135285515	135285515	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaataaagtggacaagaaacTtcactcattttctggaaaaa	7	6	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135285515	C	C	135285515	1	2	212	0	1	0	0	0	0	0	0	0	10854	1624	56	5		5	NUP205	7	135285515	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	1062546	135285515	23853148	146	165412											
SLC13A4	26266	broad.mit.edu	37	chr7	135366424	135366424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactatcaccagtccaataaCgttgactcccaggccagctt	6	14	1	1	rs137894236		TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135366424	A	A	135366424	3	1	212	1	0	0	0	0	1	0	0	0	14507	536	19	3	116	3	SLC13A4	7	135366424	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	80909	135366424	23772239	147	165413											
TRPV6	55503	broad.mit.edu	37	chr7	142572121	142572121	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attgttaaaaaagaagaaaaAcatgcagtgaggccatgtgt	10	4	0	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142572121	T	T	142572121	1	4	212	0	1	0	0	0	0	0	0	0	16725	58	2	5		5	TRPV6	7	142572121	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	7205697	142572121	16566542	148	165414											
NCAPG2	54892	broad.mit.edu	37	chr7	158475833	158475833	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttcctcattaaaactttgGtggcaggaataaaactgcca	7	9	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158475833	C	C	158475833	1	2	212	0	1	0	0	0	0	0	0	0	10303	1276	44	4		4	NCAPG2	7	158475833	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	15903712	158475833	662830	149	165415											
XKR6	286046	broad.mit.edu	37	chr8	10755669	10755669	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaggtaaggacgccccaaCggggtagggggccccatggg	20	10	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10755669	T	T	10755669	2	4	212	1	0	0	0	0	0	0	0	1	17562	523	19	4		4	XKR6	8	10755669	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08		10755669	135608353	150	165416											
DLC1	10395	broad.mit.edu	37	chr8	12973175	12973175	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcttcaatttctagaacaGaacagaagaaagacaaaatt	7	6	2	5			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12973175	A	A	12973175	1	1	212	0	1	0	0	0	0	0	0	0	4590	957	33	4		4	DLC1	8	12973175	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	2217506	12973175	133390847	151	165417											
PCM1	5108	broad.mit.edu	37	chr8	17818030	17818030	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgaaagtactcttttttGtttttgtttttctttttttt	4	4	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17818030	T	T	17818030	1	4	212	0	1	0	0	0	0	0	0	0	11678	1392	48	3		3	PCM1	8	17818030	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	4844855	17818030	128545992	152	165418											
PCM1	5108	broad.mit.edu	37	chr8	17818042	17818042	+	Intron	DEL	C	-	-													tcttttttgtttttgtttttCtttttttttgaggcagagtc					rs11984528		TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17818042	-	-	17818042	6	5	212	0	1	1	0	1	0	0	0	0	11678	928	32	0		0	PCM1	8	17818042	Intron	DEL	C	TCGA-75-5122-01A-01D-1753-08	12	17818042	128545980	153	165419											
DPYSL2	1808	broad.mit.edu	37	chr8	26501589	26501589	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgaggagcggatgtccgtCatctgggacaaggctgtggt	16	8	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26501589	T	T	26501589	2	4	212	1	0	0	0	0	0	0	0	1	4787	813	29	4		4	DPYSL2	8	26501589	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	8683547	26501589	119862433	154	165420											
WHSC1L1	54904	broad.mit.edu	37	chr8	38176357	38176357	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacatgaagtacaaataattCttaaaaattggttttaatca	4	4	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38176357	G	G	38176357	1	3	212	0	1	0	0	0	0	0	0	0	17490	928	32	4		4	WHSC1L1	8	38176357	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	11674768	38176357	108187665	155	165421											
CYP7B1	9420	broad.mit.edu	37	chr8	65509420	65509420	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattaggtaacacttcagctTtttccctcttttgaaaaagg	6	9	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65509420	A	A	65509420	4	1	212	1	0	0	0	0	0	1	0	0	4230	1850	64	5	224	5	CYP7B1	8	65509420	Nonsense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	27333063	65509420	80854602	156	165422											
TRAM1	23471	broad.mit.edu	37	chr8	71510508	71510508	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgaagaccaaaaaggaCacaaatacacaaaaatatac	4	9	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71510508	A	A	71510508	1	1	212	0	1	0	0	0	0	0	0	0	16575	493	17	3		3	TRAM1	8	71510508	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	6001088	71510508	74853514	157	165423											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885615	88885615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactgaaagagtgatacgcGtggatgctcagggaccaggc	15	8	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885615	T	T	88885615	3	4	212	1	0	0	0	0	1	0	0	0	4305	1136	40	3	606	3	DCAF4L2	8	88885615	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	17375107	88885615	57478407	158	165424											
CDH17	1015	broad.mit.edu	37	chr8	95186491	95186491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacaagaagggctttcctGtttaacaagacgtacccaga	8	10	0	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95186491	T	T	95186491	1	4	212	0	1	0	0	0	0	0	0	0	3132	1392	48	3		3	CDH17	8	95186491	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	6300876	95186491	51177531	159	165425											
COX6C	1345	broad.mit.edu	37	chr8	100903982	100903982	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaactaacaagcttcatttAaagatggaggacaagctata	7	7	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100903982	T	T	100903982	1	4	212	0	1	0	0	0	0	0	0	0	3810	377	13	5		5	COX6C	8	100903982	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	5717491	100903982	45460040	160	165426											
LRP12	29967	broad.mit.edu	37	chr8	105509131	105509131	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaatacattgctaatcaTcaaagaacttgtttcaaaca	3	8	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105509131	A	A	105509131	1	1	212	0	1	0	0	0	0	0	0	0	9041	1450	50	5		5	LRP12	8	105509131	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	4605149	105509131	40854891	161	165427											
FAM83A	84985	broad.mit.edu	37	chr8	124195477	124195477	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctcagctgagaagccCtacctgaaggaaaaatccag	11	11	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124195477	G	G	124195477	2	3	212	1	0	0	0	0	0	0	0	1	5686	668	24	4		4	FAM83A	8	124195477	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	18686346	124195477	22168545	162	165428											
EFR3A	23167	broad.mit.edu	37	chr8	132982805	132982805	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaaatgatttacagggGggatctgtaggcagtgtcaa	14	5	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132982805	C	C	132982805	2	2	212	1	0	0	0	0	0	0	0	1	4998	1219	43	4		4	EFR3A	8	132982805	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	8787328	132982805	13381217	163	165429											
TG	7038	broad.mit.edu	37	chr8	133918918	133918918	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcccaccacggctccaCtttccttctcccaggcccgc	8	20	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133918918	G	G	133918918	1	3	212	0	1	0	0	0	0	0	0	0	15936	580	20	4		4	TG	8	133918918	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	936113	133918918	12445104	164	165430											
GLIS3	169792	broad.mit.edu	37	chr9	3879429	3879429	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagacagatggccttacctCtcagctcctgcgtccacagc	9	15	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3879429	T	T	3879429	2	4	212	1	0	0	0	0	0	0	0	1	6511	912	32	4		4	GLIS3	9	3879429	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08		3879429	137334002	165	165431											
CDC37L1	55664	broad.mit.edu	37	chr9	4702100	4702101	+	Intron	INS	-	T	T													tttgttattttgccccactcINSttttttttttttaatatgtg							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4702101	T	T	4702100	6	5	212	0	1	1	1	0	0	0	0	0	3099	928	32	0		0	CDC37L1	9	4702100	Intron	INS	-	TCGA-75-5122-01A-01D-1753-08	822671	4702100	136511331	166	165432											
KIAA1432	57589	broad.mit.edu	37	chr9	5753320	5753320	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagagcccttcagtggGtgtactgagaaaaataaaac	12	6	1	2	rs148380331	by1000genomes	TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5753320	C	C	5753320	1	2	212	0	1	0	0	0	0	0	0	0	8303	1276	44	4		4	KIAA1432	9	5753320	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	1051220	5753320	135460111	167	165433											
KIAA1797	54914	broad.mit.edu	37	chr9	20933099	20933099	+	Missense_Mutation	SNP	A	T	T													ctttgacactagtcttgaatAcaagtatgttgttcctattt							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20933099	T	T	20933099	3	4	212	1	0	0	0	0	1	0	0	0	8328	391	14	5	3510	5	KIAA1797	9	20933099	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	15179779	20933099	120280332	168	165434	695	2									
KIAA1797	54914	broad.mit.edu	37	chr9	20933101	20933101	+	Missense_Mutation	SNP	A	T	T													ttgacactagtcttgaatacAagtatgttgttcctatttcc							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20933101	T	T	20933101	3	4	212	1	0	0	0	0	1	0	0	0	8328	144	5	5	3512	5	KIAA1797	9	20933101	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	2	20933101	120280330	169	165435	695	2									
TLN1	7094	broad.mit.edu	37	chr9	35714490	35714490	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtattgggaaagaggctcttGgcagagattcaaactgtggg	15	5	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35714490	A	A	35714490	1	1	212	0	1	0	0	0	0	0	0	0	16070	1363	47	4		4	TLN1	9	35714490	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	14781389	35714490	105498941	170	165436											
FAM75A3	727830	broad.mit.edu	37	chr9	40702809	40702809	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tctccctgttagcttccccgGatcctcaagccaagcatcct	6	17	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702809	A	A	40702809	3	1	212	1	0	0	0	0	1	0	0	0	5672	1174	41	4	480	4	FAM75A3	9	40702809	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	4988319	40702809	100510622	171	165437											
SLC28A3	64078	broad.mit.edu	37	chr9	86917148	86917148	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaatggctgtttagaagcCttctgccaggagacagcatc	10	11	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86917148	T	T	86917148	3	4	212	1	0	0	0	0	1	0	0	0	14647	681	24	4	1640	4	SLC28A3	9	86917148	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	46214339	86917148	54296283	172	165438											
IPPK	64768	broad.mit.edu	37	chr9	95418917	95418917	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaggcaaaaaccaccacGgaccccaccacaagcaaggg	11	14	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95418917	A	A	95418917	1	1	212	0	1	0	0	0	0	0	0	0	7871	1131	39	4		4	IPPK	9	95418917	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	8501769	95418917	45794514	173	165439											
COL15A1	1306	broad.mit.edu	37	chr9	101765772	101765772	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcggggctggccgaggtgcCcatcagcactgctggagaag	17	11	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101765772	A	A	101765772	3	1	212	1	0	0	0	0	1	0	0	0	3704	623	22	2	1133	2	COL15A1	9	101765772	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	6346855	101765772	39447659	174	165440											
RNF20	56254	broad.mit.edu	37	chr9	104314736	104314736	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccgaaggatgagcctgcGgagctaaaaccagattctga	12	10	1	3	rs146044886		TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104314736	A	A	104314736	2	1	212	1	0	0	0	0	0	0	0	1	13584	1103	39	4		4	RNF20	9	104314736	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	2548964	104314736	36898695	175	165441											
WDR38	401551	broad.mit.edu	37	chr9	127618838	127618838	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcgctagagggacacagtGccaacatcagctgcctgtgc	13	12	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127618838	A	A	127618838	3	1	212	1	0	0	0	0	1	0	0	0	17419	1319	46	4	599	4	WDR38	9	127618838	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	23304102	127618838	13594593	176	165442											
TTC16	158248	broad.mit.edu	37	chr9	130488670	130488670	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgtcctgctcctcaaccCcaagcaaccaaaggtaggtt	7	15	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130488670	G	G	130488670	3	3	212	1	0	0	0	0	1	0	0	0	16809	623	22	4	1450	4	TTC16	9	130488670	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	2869832	130488670	10724761	177	165443											
EXOSC2	23404	broad.mit.edu	37	chr9	133579025	133579025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatgtttggattggcttGgtggtctgtttatggttggt	14	2	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133579025	T	T	133579025	1	4	212	0	1	0	0	0	0	0	0	0	5357	1363	47	2		2	EXOSC2	9	133579025	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	3090355	133579025	7634406	178	165444											
COL5A1	1289	broad.mit.edu	37	chr9	137646164	137646164	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtccggccgggaagcccGgaagacgggtgagtggtgcg	20	10	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137646164	T	T	137646164	4	4	212	1	0	0	0	0	0	1	0	0	3728	1117	39	1	1881	1	COL5A1	9	137646164	Nonsense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	4067139	137646164	3567267	179	165445											
QSOX2	169714	broad.mit.edu	37	chr9	139110585	139110585	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgctccggccagggacttGtgggctgccagctccacccg	13	16	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	139110585	C	C	139110585	3	2	212	1	0	0	0	0	1	0	0	0	12992	1368	48	4	1090	4	QSOX2	9	139110585	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1464421	139110585	2102846	180	165446											
GRIN1	2902	broad.mit.edu	37	chr9	140036332	140036332	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catctgggcctgggcatgtaGcatgtacccgaatcatgccc	11	13	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140036332	A	A	140036332	1	1	212	0	1	0	0	0	0	0	0	0	6844	986	34	4		4	GRIN1	9	140036332	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	925747	140036332	1177099	181	165447											
NMT2	9397	broad.mit.edu	37	chr10	15177202	15177202	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtgttttgttgttgtTgttgttgttgttgttgttgt	12	1	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15177202	G	G	15177202	1	3	212	0	1	0	0	0	0	0	0	0	10599	1827	63	5		5	NMT2	10	15177202	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08		15177202	120357545	182	165448											
PCDH15	65217	broad.mit.edu	37	chr10	55587136	55587136	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaactacttctcagagttcCtgaacggtctacttacattg	6	12	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55587136	T	T	55587136	1	4	212	0	1	0	0	0	0	0	0	0	11605	696	24	4		4	PCDH15	10	55587136	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	40409934	55587136	79947611	183	165449											
PCDH15	65217	broad.mit.edu	37	chr10	55591057	55591057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaactatccaggtttaCcatccttgaatacttactgt	7	9	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55591057	A	A	55591057	1	1	212	0	1	0	0	0	0	0	0	0	11605	522	18	3		3	PCDH15	10	55591057	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	3921	55591057	79943690	184	165450											
PCDH15	65217	broad.mit.edu	37	chr10	55826528	55826528	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacttacttttacttgacCcacaaaggcattggcttctt	5	12	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55826528	T	T	55826528	3	4	212	1	0	0	0	0	1	0	0	0	11605	623	22	4	5341	4	PCDH15	10	55826528	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	235471	55826528	79708219	185	165451											
HPS1	3257	broad.mit.edu	37	chr10	100177472	100177472	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggttcttgctgtagtagCgcaggagcttcctggggagg	18	8	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100177472	T	T	100177472	3	4	212	1	0	0	0	0	1	0	0	0	7406	768	27	4	154	4	HPS1	10	100177472	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	44350944	100177472	35357275	186	165452											
SORCS1	114815	broad.mit.edu	37	chr10	108923918	108923918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggggctccgactcgcgcCctctccccgttctgccttct	10	20	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108923918	A	A	108923918	3	1	212	1	0	0	0	0	1	0	0	0	15044	623	22	2	3477	2	SORCS1	10	108923918	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	8746446	108923918	26610829	187	165453											
CHST15	51363	broad.mit.edu	37	chr10	125769718	125769718	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggacctgcgccagcctagCgttgaagggcctgtagaaat	14	10	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125769718	A	A	125769718	3	1	212	1	0	0	0	0	1	0	0	0	3434	768	27	3	56	3	CHST15	10	125769718	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	16845800	125769718	9765029	188	165454											
MGMT	4255	broad.mit.edu	37	chr10	131557476	131557476	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttcagagtcgttcacCagacaggtgttatggaagct	10	9	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131557476	A	A	131557476	2	1	212	1	0	0	0	0	0	0	0	1	9650	581	21	2		2	MGMT	10	131557476	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	5787758	131557476	3977271	189	165455											
APBB1	322	broad.mit.edu	37	chr11	6422341	6422341	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgatcatggtggcagacCttgctcacccgcagccccac	11	15	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6422341	A	A	6422341	1	1	212	0	1	0	0	0	0	0	0	0	761	696	24	2		2	APBB1	11	6422341	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08		6422341	128584175	190	165456											
WEE1	7465	broad.mit.edu	37	chr11	9597496	9597496	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaactccggggtagttctcTcttcatggatacagaaaaat	8	8	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9597496	G	G	9597496	3	3	212	1	0	0	0	0	1	0	0	0	17471	1551	54	5	644	5	WEE1	11	9597496	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	3175155	9597496	125409020	191	165457											
NAV2	89797	broad.mit.edu	37	chr11	20067055	20067055	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctaccaggtctggtcaaCcaaacagacaaggagaaagg	10	10	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20067055	G	G	20067055	3	3	212	1	0	0	0	0	1	0	0	0	10278	506	18	4	3904	4	NAV2	11	20067055	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	10469559	20067055	114939461	192	165458											
C11orf41	25758	broad.mit.edu	37	chr11	33689585	33689585	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagagcctggcagaaaacgAcccgtctgacgctcccctga	11	15	1	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33689585	C	C	33689585	3	2	212	1	0	0	0	0	1	0	0	0	1652	275	10	5	5531	5	C11orf41	11	33689585	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	13622530	33689585	101316931	193	165459											
C11orf94	143678	broad.mit.edu	37	chr11	45928510	45928510	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacctgtgggagatgtcggGgtgctcagccctggcccaga	16	11	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45928510	T	T	45928510	1	4	212	0	1	0	0	0	0	0	0	0	1686	1247	43	2		2	C11orf94	11	45928510	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	12238925	45928510	89078006	194	165460											
LRP4	4038	broad.mit.edu	37	chr11	46920263	46920263	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gacttctgtctctagccagtCtgtgcagtgtcccatggcag	11	12	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46920263	T	T	46920263	1	4	212	0	1	0	0	0	0	0	0	0	9046	928	32	4		4	LRP4	11	46920263	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	991753	46920263	88086253	195	165461											
OR5L2	26338	broad.mit.edu	37	chr11	55594985	55594985	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatctccttcctagggtgCatggtgcaattctacttgtt	9	11	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55594985	T	T	55594985	2	4	212	1	0	0	0	0	0	0	0	1	11265	718	25	4		4	OR5L2	11	55594985	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	8674722	55594985	79411531	196	165462											
MS4A6A	64231	broad.mit.edu	37	chr11	59949120	59949120	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccctggttggtgggttcGggtttctctgcttgggagaa	16	8	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59949120	A	A	59949120	2	1	212	1	0	0	0	0	0	0	0	1	9958	1103	39	4		4	MS4A6A	11	59949120	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	4354135	59949120	75057396	197	165463											
RELA	5970	broad.mit.edu	37	chr11	65429628	65429628	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accccagggagcacctccccGaccgccgcgggggccactta	12	19	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65429628	A	A	65429628	1	1	212	0	1	0	0	0	0	0	0	0	13324	1073	37	4		4	RELA	11	65429628	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	5480508	65429628	69576888	198	165464											
MMP10	4319	broad.mit.edu	37	chr11	102647008	102647008	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaatataattttctggtctGacctgtctttaaagaacaga	6	6	3	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102647008	C	C	102647008	1	2	212	0	1	0	0	0	0	0	0	0	9742	1305	45	4		4	MMP10	11	102647008	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	37217380	102647008	32359508	199	165465											
NCAM1	4684	broad.mit.edu	37	chr11	113140955	113140955	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaccggggccatcgtggGcatcctcatcgtcatcttcg	12	14	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113140955	T	T	113140955	3	4	212	1	0	0	0	0	1	0	0	0	10297	1203	42	3	2445	3	NCAM1	11	113140955	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	10493947	113140955	21865561	200	165466											
BACE1	23621	broad.mit.edu	37	chr11	117160510	117160510	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttccaccgctgccgtcctGaactcatcgtgcactgggga	10	16	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117160510	T	T	117160510	3	4	212	1	0	0	0	0	1	0	0	0	1286	1281	45	3	231	3	BACE1	11	117160510	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	4019555	117160510	17846006	201	165467											
GRIK4	2900	broad.mit.edu	37	chr11	120776031	120776031	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgctgaaggggaaccaCcaggagatggaaggcaatga	14	6	0	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120776031	A	A	120776031	3	1	212	1	0	0	0	0	1	0	0	0	6842	506	18	3	1347	3	GRIK4	11	120776031	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	3615521	120776031	14230485	202	165468											
SNX19	399979	broad.mit.edu	37	chr11	130781701	130781701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgattgactcaatcagcCgggtttcagcaatcttctat	7	9	5	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130781701	A	A	130781701	1	1	212	0	1	0	0	0	0	0	0	0	15004	667	23	1		1	SNX19	11	130781701	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	10005670	130781701	4224815	203	165469											
LRTM2	654429	broad.mit.edu	37	chr12	1940363	1940363	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccggctgccccgctcCattttcggggacctgacgaa	12	15	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1940363	A	A	1940363	2	1	212	1	0	0	0	0	0	0	0	1	9132	581	21	2		2	LRTM2	12	1940363	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08		1940363	131911532	204	165470											
C1S	716	broad.mit.edu	37	chr12	7177423	7177423	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcatgtgtttattcatcCgggatggaagctgctggaag	14	6	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7177423	T	T	7177423	3	4	212	1	0	0	0	0	1	0	0	0	1994	652	23	4	1577	4	C1S	12	7177423	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	5237060	7177423	126674472	205	165471											
C3AR1	719	broad.mit.edu	37	chr12	8211488	8211488	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caagagggcataaaggaaggGattaaagcaactattggcag	13	5	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8211488	C	C	8211488	3	2	212	1	0	0	0	0	1	0	0	0	2227	1174	41	4	158	4	C3AR1	12	8211488	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1034065	8211488	125640407	206	165472											
CSDA	8531	broad.mit.edu	37	chr12	10865778	10865778	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccatgcatgaacaatttctCaatcactggttaagtaacag	6	9	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10865778	G	G	10865778	1	3	212	0	1	0	0	0	0	0	0	0	3961	841	29	4		4	CSDA	12	10865778	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	2654290	10865778	122986117	207	165473											
GRIN2B	2904	broad.mit.edu	37	chr12	13717037	13717037	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggccactgtagcggtcgctCttgaaggagaatttgccgta	13	9	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13717037	G	G	13717037	3	3	212	1	0	0	0	0	1	0	0	0	6846	912	32	4	1323	4	GRIN2B	12	13717037	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	2851259	13717037	120134858	208	165474											
GRIN2B	2904	broad.mit.edu	37	chr12	13764648	13764648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagtgcagcggttccaGccggccttacctctgccatc	13	14	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13764648	T	T	13764648	1	4	212	0	1	0	0	0	0	0	0	0	6846	986	34	3		3	GRIN2B	12	13764648	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	47611	13764648	120087247	209	165475											
SLCO1B1	10599	broad.mit.edu	37	chr12	21391852	21391852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctggatactggagaaaatGttttaagttattacacacaa	7	5	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21391852	T	T	21391852	1	4	212	0	1	0	0	0	0	0	0	0	14837	1392	48	3		3	SLCO1B1	12	21391852	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	7627204	21391852	112460043	210	165476											
KIAA0528	9847	broad.mit.edu	37	chr12	22688245	22688245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagtgacttaaggtacaCatctgttttaaaggtggtat	11	4	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22688245	A	A	22688245	3	1	212	1	0	0	0	0	1	0	0	0	8252	478	17	3	2970	3	KIAA0528	12	22688245	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	1296393	22688245	111163650	211	165477											
ITPR2	3709	broad.mit.edu	37	chr12	26628358	26628358	+	Intron	DEL	A	-	-													ttcatcacatccacctatccAaaaaaaaaaagaatattgaa							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26628358	-	-	26628358	6	5	212	0	1	1	0	1	0	0	0	0	7991	145	5	0		0	ITPR2	12	26628358	Intron	DEL	A	TCGA-75-5122-01A-01D-1753-08	3940113	26628358	107223537	212	165478											
HOXC4	3221	broad.mit.edu	37	chr12	54448629	54448629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttgcttttcccctcccCccagtgaaccccaattataa	3	16	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54448629	A	A	54448629	1	1	212	0	1	0	0	0	0	0	0	0	7380	638	22	2		2	HOXC4	12	54448629	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	27820271	54448629	79403266	213	165479											
ARHGAP9	64333	broad.mit.edu	37	chr12	57872486	57872486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccgagctagcctgagccCtgcttgggagggcctgagac	15	13	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57872486	A	A	57872486	3	1	212	1	0	0	0	0	1	0	0	0	891	681	24	2	1888	2	ARHGAP9	12	57872486	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	3423857	57872486	75979409	214	165480											
MARS	4141	broad.mit.edu	37	chr12	57910304	57910304	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactcttggatctaaagaaAcagttggctgtagctgaggg	12	6	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57910304	G	G	57910304	2	3	212	1	0	0	0	0	0	0	0	1	9408	40	2	5		5	MARS	12	57910304	Silent	SNP	A	TCGA-75-5122-01A-01D-1753-08	37818	57910304	75941591	215	165481											
SLC16A7	9194	broad.mit.edu	37	chr12	60168856	60168856	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcattatgttcctaggTttttttgcccccattatatt	5	8	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60168856	C	C	60168856	2	2	212	1	0	0	0	0	0	0	0	1	14526	1712	60	5		5	SLC16A7	12	60168856	Silent	SNP	T	TCGA-75-5122-01A-01D-1753-08	2258552	60168856	73683039	216	165482											
DPY19L2	283417	broad.mit.edu	37	chr12	63964641	63964641	+	Intron	DEL	A	-	-													acctgcaaagacagcatctgAaaaaaaaaaaaggatatatt							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	63964641	-	-	63964641	6	5	212	0	1	1	0	1	0	0	0	0	4781	261	9	0		0	DPY19L2	12	63964641	Intron	DEL	A	TCGA-75-5122-01A-01D-1753-08	3795785	63964641	69887254	217	165483											
GNS	2799	broad.mit.edu	37	chr12	65115563	65115563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgcctagaagggcaatcGgcttggctcatgccggacat	13	10	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65115563	T	T	65115563	1	4	212	0	1	0	0	0	0	0	0	0	6614	1131	39	1		1	GNS	12	65115563	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	1150922	65115563	68736332	218	165484											
IFNG	3458	broad.mit.edu	37	chr12	68549203	68549203	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccctgttttagctgctggcGacagttcagccatcacttgg	10	12	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68549203	A	A	68549203	3	1	212	1	0	0	0	0	1	0	0	0	7618	1059	37	4	73	4	IFNG	12	68549203	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	3433640	68549203	65302692	219	165485											
NUP107	57122	broad.mit.edu	37	chr12	69115726	69115726	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agacatcagtagcaactctgGatgaaactgaagaactccct	8	10	2	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69115726	A	A	69115726	3	1	212	1	0	0	0	0	1	0	0	0	10848	1174	41	4	1479	4	NUP107	12	69115726	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	566523	69115726	64736169	220	165486											
FRS2	10818	broad.mit.edu	37	chr12	69965138	69965138	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaataatagtataaatgtGgtggaagagccagttgtaga	11	3	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69965138	A	A	69965138	2	1	212	1	0	0	0	0	0	0	0	1	6121	1335	47	4		4	FRS2	12	69965138	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	849412	69965138	63886757	221	165487											
LGR5	8549	broad.mit.edu	37	chr12	71971673	71971673	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacatgttctttattctatAtaattctctcatttgccttt	2	9	5	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71971673	G	G	71971673	1	3	212	0	1	0	0	0	0	0	0	0	8829	464	16	5		5	LGR5	12	71971673	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	2006535	71971673	61880222	222	165488											
TPCN1	53373	broad.mit.edu	37	chr12	113704105	113704105	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccacggccctgctgctgCtgctgctctccctgtgcgag	13	16	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113704105	A	A	113704105	3	1	212	1	0	0	0	0	1	0	0	0	16519	796	28	3	588	3	TPCN1	12	113704105	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	41732432	113704105	20147790	223	165489											
DNAH10	196385	broad.mit.edu	37	chr12	124311323	124311323	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaggttttctcagggctctCagaaagctacctcggccagt	11	11	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124311323	G	G	124311323	2	3	212	1	0	0	0	0	0	0	0	1	4638	813	29	4		4	DNAH10	12	124311323	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	10607218	124311323	9540572	224	165490											
NCOR2	9612	broad.mit.edu	37	chr12	124821202	124821202	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccatcgcgaggggagccgTtggccagcgcacctccttct	12	15	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124821202	C	C	124821202	1	2	212	0	1	0	0	0	0	0	0	0	10331	1740	60	5		5	NCOR2	12	124821202	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	509879	124821202	9030693	225	165491											
GLT1D1	144423	broad.mit.edu	37	chr12	129360445	129360446	+	Intron	INS	-	T	T													catcttctcctttctctgtaINSttttttgataaagggcccat							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129360446	T	T	129360445	6	5	212	0	1	1	1	0	0	0	0	0	6529	464	16	0		0	GLT1D1	12	129360445	Intron	INS	-	TCGA-75-5122-01A-01D-1753-08	4539243	129360445	4491450	226	165492											
TRPC4	7223	broad.mit.edu	37	chr13	38266509	38266509	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaggaaaaataagtcaCagttacatggagtggcctca	11	6	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38266509	A	A	38266509	1	1	212	0	1	0	0	0	0	0	0	0	16705	493	17	3		3	TRPC4	13	38266509	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08		38266509	76903369	227	165493											
CKAP2	26586	broad.mit.edu	37	chr13	53036658	53036658	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagattatttactgaaAaagtaaacaacacattttct	3	6	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53036658	T	T	53036658	4	4	212	1	0	0	0	0	0	1	0	0	3473	15	1	5	1282	5	CKAP2	13	53036658	Nonsense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	14770149	53036658	62133220	228	165494											
ATP11A	23250	broad.mit.edu	37	chr13	113474218	113474218	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttttctgtcgccaggttcGtgggtcgcatcaacgtttac	11	11	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113474218	A	A	113474218	3	1	212	1	0	0	0	0	1	0	0	0	1123	1145	40	4	709	4	ATP11A	13	113474218	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	60437560	113474218	1695660	229	165495											
LAMP1	3916	broad.mit.edu	37	chr13	113960770	113960770	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattttctggacagtttttGatggtctccgtcttccctgg	10	9	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113960770	A	A	113960770	1	1	212	0	1	0	0	0	0	0	0	0	8689	1305	45	4		4	LAMP1	13	113960770	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	486552	113960770	1209108	230	165496											
RNASE2	6036	broad.mit.edu	37	chr14	21387669	21387669	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagatgtggcacactttggGgacaggaaggaacaggaaat	16	5	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21387669	C	C	21387669	1	2	212	0	1	0	0	0	0	0	0	0	13515	1247	43	4		4	RNASE2	14	21387669	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08		21387669	85961871	231	165497											
NYNRIN	57523	broad.mit.edu	37	chr14	24882641	24882641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtaataggtcagacctcCccagcctcccaggccctcct	8	18	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24882641	A	A	24882641	1	1	212	0	1	0	0	0	0	0	0	0	10891	638	22	2		2	NYNRIN	14	24882641	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	3494972	24882641	82466899	232	165498											
STYX	6815	broad.mit.edu	37	chr14	53224674	53224674	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctaaaacctagccacagtTtaaattctcattaaaatgaa	3	10	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53224674	G	G	53224674	1	3	212	0	1	0	0	0	0	0	0	0	15478	1856	64	5		5	STYX	14	53224674	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	28342033	53224674	54124866	233	165499											
PTGR2	145482	broad.mit.edu	37	chr14	74345977	74345977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttattttgacaatgttgGtggtaacatcagtgatacag	10	4	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74345977	T	T	74345977	3	4	212	1	0	0	0	0	1	0	0	0	12860	1261	44	3	716	3	PTGR2	14	74345977	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	21121303	74345977	33003563	234	165500											
ALKBH1	8846	broad.mit.edu	37	chr14	78146364	78146364	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtaaaatggcagcaaTagccgtttgtatggactctg	10	7	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78146364	C	C	78146364	1	2	212	0	1	0	0	0	0	0	0	0	526	1421	49	5		5	ALKBH1	14	78146364	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	3800387	78146364	29203176	235	165501											
HERC2	8924	broad.mit.edu	37	chr15	28443944	28443944	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgaaattggagatccaGtccatcatgtacacaggtga	9	7	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28443944	T	T	28443944	1	4	212	0	1	0	0	0	0	0	0	0	7125	1044	36	3		3	HERC2	15	28443944	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08		28443944	74087448	236	165502											
TP53BP1	7158	broad.mit.edu	37	chr15	43733845	43733845	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttagttagtatcacaccTaaaccttcactctgctctac	3	12	4	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43733845	C	C	43733845	1	2	212	0	1	0	0	0	0	0	0	0	16507	1537	53	5		5	TP53BP1	15	43733845	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08	15289901	43733845	58797547	237	165503											
SEMA6D	80031	broad.mit.edu	37	chr15	48063639	48063639	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaatgacttctctggaaaGacaaagaggttatcacaaaa	7	9	2	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48063639	T	T	48063639	3	4	212	1	0	0	0	0	1	0	0	0	14155	942	33	3	2992	3	SEMA6D	15	48063639	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	4329794	48063639	54467753	238	165504											
CGNL1	84952	broad.mit.edu	37	chr15	57730535	57730535	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatacgcccagcctagccCaataagaaacctgaaacagc	6	16	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57730535	A	A	57730535	3	1	212	1	0	0	0	0	1	0	0	0	3334	594	21	2	340	2	CGNL1	15	57730535	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	9666896	57730535	44800857	239	165505											
TBC1D21	161514	broad.mit.edu	37	chr15	74179872	74179872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggaatggctgactcCaggcacgtggttggtgggta	17	9	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74179872	A	A	74179872	1	1	212	0	1	0	0	0	0	0	0	0	15729	609	21	2		2	TBC1D21	15	74179872	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	16449337	74179872	28351520	240	165506											
ACAN	176	broad.mit.edu	37	chr15	89382197	89382197	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaagtccagagcctgcgctCcaatgactctggggtctacc	12	13	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89382197	T	T	89382197	3	4	212	1	0	0	0	0	1	0	0	0	117	855	30	4	380	4	ACAN	15	89382197	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	15202325	89382197	13149195	241	165507											
IQGAP1	8826	broad.mit.edu	37	chr15	91037943	91037944	+	Splice_Site	DEL	AG	-	-													tgacatgatgtgatttttacAgagtctccaaaaagcctagg							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	91037944	-	-	91037943	8	5	212	1	0	1	0	1	0	0	1	0	7884	202	7	0	4769	0	IQGAP1	15	91037943	Splice_Site	DEL	AG	TCGA-75-5122-01A-01D-1753-08	1655746	91037943	11493449	242	165508											
CRTC3	64784	broad.mit.edu	37	chr15	91147759	91147759	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttacatagcatccagttgCcagagtgtgtttatgtaagc	9	7	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91147759	T	T	91147759	1	4	212	0	1	0	0	0	0	0	0	0	3933	754	26	4		4	CRTC3	15	91147759	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	109816	91147759	11383633	243	165509											
TMEM8A	58986	broad.mit.edu	37	chr16	422754	422754	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacacagggatgactgcaGggacgtctctgagggctcaa	14	9	2	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	422754	A	A	422754	1	1	212	0	1	0	0	0	0	0	0	0	16337	1015	35	4		4	TMEM8A	16	422754	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08		422754	89931999	244	165510											
WDR90	197335	broad.mit.edu	37	chr16	716508	716508	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctggctgccagtggggaCcagcgggtcagcgtctgggc	19	11	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	716508	G	G	716508	3	3	212	1	0	0	0	0	1	0	0	0	17464	506	18	4	4944	4	WDR90	16	716508	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	293754	716508	89638245	245	165511											
PTX4	390667	broad.mit.edu	37	chr16	1536062	1536062	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgatggcaaggtttgcaaCttccccgggaaccagcgccc	11	16	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1536062	G	G	1536062	3	3	212	1	0	0	0	0	1	0	0	0	12931	565	20	4	124	4	PTX4	16	1536062	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	819554	1536062	88818691	246	165512											
MYH11	4629	broad.mit.edu	37	chr16	15797975	15797975	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaacgaaagaggtctcgtttCctcgcctgtgggttgtaaga	13	8	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15797975	T	T	15797975	3	4	212	1	0	0	0	0	1	0	0	0	10125	855	30	4	130	4	MYH11	16	15797975	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	14261913	15797975	74556778	247	165513											
GTF3C1	2975	broad.mit.edu	37	chr16	27483125	27483125	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgaaggggagggcccggttCttcttggggcccagcgtgtg	18	10	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27483125	T	T	27483125	2	4	212	1	0	0	0	0	0	0	0	1	6937	912	32	4		4	GTF3C1	16	27483125	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	11685150	27483125	62871628	248	165514											
C16orf53	79447	broad.mit.edu	37	chr16	29830979	29830979	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatccttcgtaccgggagGgacctcttcagcctggactc	11	14	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29830979	A	A	29830979	2	1	212	1	0	0	0	0	0	0	0	1	1832	1223	43	4		4	C16orf53	16	29830979	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	2347854	29830979	60523774	249	165515											
GPT2	84706	broad.mit.edu	37	chr16	46943706	46943706	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atctctgagctcgacgccatCcaggtgaattactacctgga	9	12	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46943706	T	T	46943706	2	4	212	1	0	0	0	0	0	0	0	1	6804	845	30	4		4	GPT2	16	46943706	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	17112727	46943706	43411047	250	165516											
PHKB	5257	broad.mit.edu	37	chr16	47599960	47599960	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctgtagtcatcatccCtgtggtacccactgccaaat	6	15	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47599960	T	T	47599960	1	4	212	0	1	0	0	0	0	0	0	0	11940	696	24	4		4	PHKB	16	47599960	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	656254	47599960	42754793	251	165517											
TMEM188	255919	broad.mit.edu	37	chr16	50059598	50059598	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgattcctgcggtggtttCcggtaactgccaaggttagg	13	10	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50059598	T	T	50059598	1	4	212	0	1	0	0	0	0	0	0	0	16233	855	30	4		4	TMEM188	16	50059598	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	2459638	50059598	40295155	252	165518											
IRX3	79191	broad.mit.edu	37	chr16	54319192	54319192	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccataagcgtttccctcctCgtcagtgcggctgcgaggcg	12	15	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54319192	T	T	54319192	3	4	212	1	0	0	0	0	1	0	0	0	7915	893	31	4	916	4	IRX3	16	54319192	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	4259594	54319192	36035561	253	165519											
ABR	29	broad.mit.edu	37	chr17	982513	982513	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgcgttcacgcagcctgtTgcctgcacagccagacaaag	11	15	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	982513	G	G	982513	1	3	212	0	1	0	0	0	0	0	0	0	99	1827	63	5		5	ABR	17	982513	Intron	SNP	T	TCGA-75-5122-01A-01D-1753-08		982513	80212697	254	165520											
P2RX1	5023	broad.mit.edu	37	chr17	3802231	3802231	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacactggacactcaccttGccgtccaccaggatgtcaaa	7	15	3	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3802231	A	A	3802231	2	1	212	1	0	0	0	0	0	0	0	1	11433	1306	46	4		4	P2RX1	17	3802231	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	2819718	3802231	77392979	255	165521											
RABEP1	9135	broad.mit.edu	37	chr17	5241393	5241393	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctttgaaggataaactgaCagaggctgaagacaaaatta	10	5	0	5			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5241393	T	T	5241393	3	4	212	1	0	0	0	0	1	0	0	0	13069	478	17	4	626	4	RABEP1	17	5241393	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	1439162	5241393	75953817	256	165522											
WRAP53	55135	broad.mit.edu	37	chr17	7606058	7606058	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtcctgttccttgtctcCaggatgctgagctcctgtgc	11	13	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7606058	T	T	7606058	1	4	212	0	1	0	0	0	0	0	0	0	17527	609	21	4		4	WRAP53	17	7606058	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	2364665	7606058	73589152	257	165523											
MYH2	4620	broad.mit.edu	37	chr17	10426900	10426900	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagctgcagatccttcacGgtctgctccatgttcttctt	9	13	4	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10426900	T	T	10426900	2	4	212	1	0	0	0	0	0	0	0	1	10129	1103	39	1		1	MYH2	17	10426900	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	2820842	10426900	70768310	258	165524											
MYH3	4621	broad.mit.edu	37	chr17	10535214	10535214	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctctccgtctgctccagAgtagcccgcagctcctccac	8	20	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10535214	G	G	10535214	2	3	212	1	0	0	0	0	0	0	0	1	10130	291	11	5		5	MYH3	17	10535214	Silent	SNP	A	TCGA-75-5122-01A-01D-1753-08	108314	10535214	70659996	259	165525											
CCDC144A	9720	broad.mit.edu	37	chr17	16593879	16593879	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctacagctggtggaaAaacagcgtcggcagcgagag	13	11	0	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16593879	G	G	16593879	2	3	212	1	0	0	0	0	0	0	0	1	2803	11	1	5		5	CCDC144A	17	16593879	Silent	SNP	A	TCGA-75-5122-01A-01D-1753-08	6058665	16593879	64601331	260	165526											
RAB34	83871	broad.mit.edu	37	chr17	27042374	27042374	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcataggcccaattaccccCtctctggtcctacatgcatt	5	15	2	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27042374	G	G	27042374	1	3	212	0	1	0	0	0	0	0	0	0	13032	696	24	4		4	RAB34	17	27042374	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	10448495	27042374	54152836	261	165527											
TOP2A	7153	broad.mit.edu	37	chr17	38572870	38572870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattaccatatttaggccaGttccagtgacactcagtaca	7	10	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38572870	T	T	38572870	1	4	212	0	1	0	0	0	0	0	0	0	16489	1044	36	3		3	TOP2A	17	38572870	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	11530496	38572870	42622340	262	165528											
DUSP3	1845	broad.mit.edu	37	chr17	41852075	41852075	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttcctggtgggaggtccCttaccattcttttgagccaa	9	11	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41852075	G	G	41852075	1	3	212	0	1	0	0	0	0	0	0	0	4866	696	24	4		4	DUSP3	17	41852075	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	3279205	41852075	39343135	263	165529											
RNF157	114804	broad.mit.edu	37	chr17	74161669	74161669	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgaagaagcccaaacagcAcatcttgatgcccatgactt	8	11	1	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74161669	T	T	74161669	1	4	212	0	1	0	0	0	0	0	0	0	13565	174	6	5		5	RNF157	17	74161669	Intron	SNP	A	TCGA-75-5122-01A-01D-1753-08	32309594	74161669	7033541	264	165530											
DSG3	1830	broad.mit.edu	37	chr18	29039789	29039789	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttacatattctttaataaaCgttttcctgtattcctagac	4	8	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29039789	A	A	29039789	1	1	212	0	1	0	0	0	0	0	0	0	4818	551	19	3		3	DSG3	18	29039789	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08		29039789	49037459	265	165531											
SYT4	6860	broad.mit.edu	37	chr18	40850335	40850335	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagagcacgtgccacttggCaatttgtctcctggggtagt	12	10	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40850335	G	G	40850335	3	3	212	1	0	0	0	0	1	0	0	0	15595	710	25	4	32	4	SYT4	18	40850335	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	11810546	40850335	37226913	266	165532											
SETBP1	26040	broad.mit.edu	37	chr18	42281721	42281721	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaccatcaagcagtctgGggaccagaaggtgtcccgtg	13	11	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42281721	T	T	42281721	3	4	212	1	0	0	0	0	1	0	0	0	14242	1232	43	2	412	2	SETBP1	18	42281721	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1431386	42281721	35795527	267	165533											
SERPINB13	5275	broad.mit.edu	37	chr18	61262278	61262278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagcacaagtaaatctGtacagatgatgacacagagc	10	8	1	5			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61262278	T	T	61262278	3	4	212	1	0	0	0	0	1	0	0	0	14213	1377	48	3	653	3	SERPINB13	18	61262278	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	18980557	61262278	16814970	268	165534											
CALR	811	broad.mit.edu	37	chr19	13051264	13051264	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcccacagactccaagcctGaggttggtgtttgggcaggg	14	10	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13051264	A	A	13051264	3	1	212	1	0	0	0	0	1	0	0	0	2618	1291	45	4	718	4	CALR	19	13051264	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08		13051264	46077719	269	165535											
PKN1	5585	broad.mit.edu	37	chr19	14569090	14569090	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggcgggaccagcggggccTgtgtgccctcaaattcctga	14	13	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14569090	A	A	14569090	3	1	212	1	0	0	0	0	1	0	0	0	12074	1580	55	5	1399	5	PKN1	19	14569090	Missense_Mutation	SNP	T	TCGA-75-5122-01A-01D-1753-08	1517826	14569090	44559893	270	165536											
SLC5A5	6528	broad.mit.edu	37	chr19	17993111	17993111	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccattaaactgaggctcagaGaggtcacatgtgtcagtggc	12	9	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17993111	T	T	17993111	1	4	212	0	1	0	0	0	0	0	0	0	14782	957	33	3		3	SLC5A5	19	17993111	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	3424021	17993111	41135872	271	165537											
C19orf46	163183	broad.mit.edu	37	chr19	36496333	36496333	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtcgggagtgagaggtgtCtgcttcctggagaaccagca	15	9	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36496333	A	A	36496333	3	1	212	1	0	0	0	0	1	0	0	0	1948	913	32	3	352	3	C19orf46	19	36496333	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	18503222	36496333	22632650	272	165538											
MAP4K1	11184	broad.mit.edu	37	chr19	39090623	39090623	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacgtagtccggctaggaaaGagctgcagggaatgggagag	17	7	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39090623	C	C	39090623	2	2	212	1	0	0	0	0	0	0	0	1	9351	929	33	4		4	MAP4K1	19	39090623	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	2594290	39090623	20038360	273	165539											
AKT2	208	broad.mit.edu	37	chr19	40745995	40745995	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctggaggacccggctctcgGtgactgtgtgagcgacttca	14	11	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40745995	C	C	40745995	3	2	212	1	0	0	0	0	1	0	0	0	480	1261	44	4	881	4	AKT2	19	40745995	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	1655372	40745995	18382988	274	165540											
CYP2S1	29785	broad.mit.edu	37	chr19	41700443	41700443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctttcttcctccctacCcccagctgagtaagaagtac	5	16	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41700443	A	A	41700443	1	1	212	0	1	0	0	0	0	0	0	0	4207	638	22	2		2	CYP2S1	19	41700443	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	954448	41700443	17428540	275	165541											
AXL	558	broad.mit.edu	37	chr19	41748686	41748686	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcatcaagtatgtgcacatCtttgccgaggccttctgcct	8	13	4	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41748686	A	A	41748686	1	1	212	0	1	0	0	0	0	0	0	0	1243	928	32	3		3	AXL	19	41748686	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	48243	41748686	17380297	276	165542											
PSG8	440533	broad.mit.edu	37	chr19	43359837	43359837	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagaaacttcctgagcaCggctgtaggctgtgctgtcc	11	12	0	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43359837	T	T	43359837	1	4	212	1	0	0	0	0	0	0	0	0	12767	551	19	4		4	PSG8	19	43359837	Translation_Start_Site	SNP	C	TCGA-75-5122-01A-01D-1753-08	1611151	43359837	15769146	277	165543											
PSG5	5673	broad.mit.edu	37	chr19	43679767	43679767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatattcactgagccaaagcCtgaggtattcacctgtttct	7	10	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43679767	A	A	43679767	1	1	212	0	1	0	0	0	0	0	0	0	12764	696	24	2		2	PSG5	19	43679767	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	319930	43679767	15449216	278	165544											
NOVA2	4858	broad.mit.edu	37	chr19	46444058	46444058	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcgggctcgccgctgaccGtcaccacgcgctcctgcagg	13	18	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46444058	A	A	46444058	3	1	212	1	0	0	0	0	1	0	0	0	10650	1145	40	4	940	4	NOVA2	19	46444058	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	2764291	46444058	12684925	279	165545											
PLEKHA4	57664	broad.mit.edu	37	chr19	49348609	49348609	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcagatgcaaggattacagGatggacctacagcttacctt	10	9	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49348609	A	A	49348609	1	1	212	0	1	0	0	0	0	0	0	0	12153	1189	41	4		4	PLEKHA4	19	49348609	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	2904551	49348609	9780374	280	165546											
TBC1D17	79735	broad.mit.edu	37	chr19	50384658	50384658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaggctggaggttccctGcccgcactgcacttccaccg	10	18	0	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50384658	T	T	50384658	2	4	212	1	0	0	0	0	0	0	0	1	15725	1306	46	3		3	TBC1D17	19	50384658	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	1036049	50384658	8744325	281	165547											
EPS8L1	54869	broad.mit.edu	37	chr19	55591906	55591906	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgggggagcagccaggaCgaggtgggggcgaggaacca	20	8	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55591906	T	T	55591906	1	4	212	0	1	0	0	0	0	0	0	0	5237	535	19	4		4	EPS8L1	19	55591906	Intron	SNP	C	TCGA-75-5122-01A-01D-1753-08	5207248	55591906	3537077	282	165548											
ANKRD5	63926	broad.mit.edu	37	chr20	10030301	10030301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagaacgacttcgtgatgGtgttggaggaaaggcaggat	16	5	0	2	rs142831233		TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10030301	T	T	10030301	3	4	212	1	0	0	0	0	1	0	0	0	676	1261	44	3	1102	3	ANKRD5	20	10030301	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08		10030301	52995219	283	165549											
BPIL3	128859	broad.mit.edu	37	chr20	31624311	31624311	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgatgtccgcaccagccaCcacagccagctacatccaac	6	18	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31624311	G	G	31624311	3	3	212	1	0	0	0	0	1	0	0	0	1502	507	18	4	664	4	BPIL3	20	31624311	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	21594010	31624311	31401209	284	165550											
KIAA1755	85449	broad.mit.edu	37	chr20	36856552	36856552	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacctcccactcacctgGgtggcctgcagggcgctgac	11	18	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36856552	A	A	36856552	2	1	212	1	0	0	0	0	0	0	0	1	8327	1219	43	4		4	KIAA1755	20	36856552	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	5232241	36856552	26168968	285	165551											
BPI	671	broad.mit.edu	37	chr20	36948635	36948635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaactatggtctggtggcaCctccagcaaccacggctgag	11	13	2	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36948635	A	A	36948635	3	1	212	1	0	0	0	0	1	0	0	0	1499	507	18	3	753	3	BPI	20	36948635	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	92083	36948635	26076885	286	165552											
FAM83D	81610	broad.mit.edu	37	chr20	37570740	37570740	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatttctggatatgtgcatgGatctgaaagttcatcctgaa	9	6	3	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37570740	T	T	37570740	3	4	212	1	0	0	0	0	1	0	0	0	5689	1174	41	3	718	3	FAM83D	20	37570740	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	622105	37570740	25454780	287	165553											
PABPC1L	80336	broad.mit.edu	37	chr20	43566779	43566779	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgggcatgctgctggagattGacaactcagagctgttgctc	13	10	1	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43566779	C	C	43566779	3	2	212	1	0	0	0	0	1	0	0	0	11458	1290	45	4	1773	4	PABPC1L	20	43566779	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	5996039	43566779	19458741	288	165554											
STX16	8675	broad.mit.edu	37	chr20	57242593	57242593	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcatcagcttagatccAgaagcagcgattggtgtgac	12	9	2	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57242593	G	G	57242593	2	3	212	1	0	0	0	0	0	0	0	1	15457	175	7	5		5	STX16	20	57242593	Silent	SNP	A	TCGA-75-5122-01A-01D-1753-08	13675814	57242593	5782927	289	165555											
TPTE	7179	broad.mit.edu	37	chr21	10934993	10934993	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttatctagaaaccgcacaActtcctaaaaaagacaaaca	3	11	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10934993	T	T	10934993	3	4	212	1	0	0	0	0	1	0	0	0	16554	43	2	5	895	5	TPTE	21	10934993	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08		10934993	37194902	290	165556											
ITSN1	6453	broad.mit.edu	37	chr21	35208915	35208915	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attatgtgaagctgaccacaGacatggacccaagccagcaa	9	11	0	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35208915	C	C	35208915	3	2	212	1	0	0	0	0	1	0	0	0	7996	942	33	4	3750	4	ITSN1	21	35208915	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	24273922	35208915	12920980	291	165557											
BCR	613	broad.mit.edu	37	chr22	23606323	23606332	+	Intron	DEL	CCCTGTACTG	-	-													ggaggagccccacaacagcaCcctgtactgcctgcagacag							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23606332	-	-	23606323	6	5	212	0	1	1	0	1	0	0	0	0	1393	522	18	0		0	BCR	22	23606323	Intron	DEL	CCCTGTACTG	TCGA-75-5122-01A-01D-1753-08		23606323	27698243	292	165558											
LARGE	9215	broad.mit.edu	37	chr22	34157357	34157357	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactttggcttccattcttaCcttcgaagctcccagaaaac	5	14	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34157357	T	T	34157357	5	4	212	1	0	0	0	0	0	0	1	0	8699	521	18	4	2219	4	LARGE	22	34157357	Splice_Site	SNP	C	TCGA-75-5122-01A-01D-1753-08	10551034	34157357	17147209	293	165559											
CACNG2	10369	broad.mit.edu	37	chr22	37098677	37098677	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttctcgggagagtgtgtgtGagggtgcaagtactaaagcc	16	6	1	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37098677	T	T	37098677	1	4	212	0	1	0	0	0	0	0	0	0	2583	1305	45	3		3	CACNG2	22	37098677	5'UTR	SNP	G	TCGA-75-5122-01A-01D-1753-08	2941320	37098677	14205889	294	165560											
TCF20	6942	broad.mit.edu	37	chr22	42608568	42608568	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcttggtttccatggacAccaaaccaccaggaagaatg	9	11	1	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42608568	T	T	42608568	3	4	212	1	0	0	0	0	1	0	0	0	15812	159	6	5	3176	5	TCF20	22	42608568	Missense_Mutation	SNP	A	TCGA-75-5122-01A-01D-1753-08	5509891	42608568	8695998	295	165561											
ARSF	416	broad.mit.edu	37	chrX	3002444	3002444	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttagcctttgagagtcagctCtggctctgtgtgcagctagt	12	9	3	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3002444	G	G	3002444	2	3	212	1	0	0	0	0	0	0	0	1	995	900	32	4		4	ARSF	23	3002444	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08		3002444	152268116	296	165562											
OFD1	8481	broad.mit.edu	37	chrX	13764945	13764946	+	Frame_Shift_Ins	INS	-	A	A													gcaaaaattaaaatggaagcINSaaaaaaaaagtatgaaaagg							TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13764946	A	A	13764945	7	5	212	1	0	1	1	0	0	0	0	0	10933	710	25	0	731	0	OFD1	23	13764945	Frame_Shift_Ins	INS	-	TCGA-75-5122-01A-01D-1753-08	10762501	13764945	141505615	297	165563											
SYTL5	94122	broad.mit.edu	37	chrX	37935840	37935840	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcttcttagcaagttcaGatcggcaaccagaggagaaa	9	8	3	3			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37935840	T	T	37935840	3	4	212	1	0	0	0	0	1	0	0	0	15605	942	33	3	593	3	SYTL5	23	37935840	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	24170895	37935840	117334720	298	165564											
SMC1A	8243	broad.mit.edu	37	chrX	53432771	53432771	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgatatactgaatacagtCccggcctgtcttctccgagt	8	12	2	2			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53432771	T	T	53432771	3	4	212	1	0	0	0	0	1	0	0	0	14895	855	30	4	2102	4	SMC1A	23	53432771	Missense_Mutation	SNP	C	TCGA-75-5122-01A-01D-1753-08	15496931	53432771	101837789	299	165565											
PABPC5	140886	broad.mit.edu	37	chrX	90690801	90690801	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcggatgcagagtgggcCttgaacaccatgaattttga	12	10	0	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90690801	A	A	90690801	2	1	212	1	0	0	0	0	0	0	0	1	11461	668	24	2		2	PABPC5	23	90690801	Silent	SNP	C	TCGA-75-5122-01A-01D-1753-08	37258030	90690801	64579759	300	165566											
IRS4	8471	broad.mit.edu	37	chrX	107975900	107975900	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaatcttctctctccggGggtcttggcacccggcgact	11	14	5	1			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107975900	T	T	107975900	2	4	212	1	0	0	0	0	0	0	0	1	7912	1219	43	2		2	IRS4	23	107975900	Silent	SNP	G	TCGA-75-5122-01A-01D-1753-08	17285099	107975900	47294660	301	165567											
TRPC5	7224	broad.mit.edu	37	chrX	111019956	111019956	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgagagaaggacccatgaagGagcgtttgcttgatgactca	13	7	1	5			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111019956	C	C	111019956	3	2	212	1	0	0	0	0	1	0	0	0	16707	1174	41	4	418	4	TRPC5	23	111019956	Missense_Mutation	SNP	G	TCGA-75-5122-01A-01D-1753-08	3044056	111019956	44250604	302	165568											
SPANXN1	494118	broad.mit.edu	37	chrX	144337426	144337426	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgaagacctagacttacCtgaaggcctagactcagctg	11	10	1	5			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144337426	A	A	144337426	1	1	212	0	1	0	0	0	0	0	0	0	15106	696	24	2		2	SPANXN1	23	144337426	3'UTR	SNP	C	TCGA-75-5122-01A-01D-1753-08	33317470	144337426	10933134	303	165569											
FMR1	2332	broad.mit.edu	37	chrX	147007156	147007156	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgatgaagttgaggtgaGttttccctgccataaagtca	11	6	1	4			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147007156	T	T	147007156	1	4	212	0	1	0	0	0	0	0	0	0	6018	1044	36	3		3	FMR1	23	147007156	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	2669730	147007156	8263404	304	165570											
IDH3G	3421	broad.mit.edu	37	chrX	153052787	153052787	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctggcaaggcctcgaggGcaacagggcactcgcctagg	15	12	1	0			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153052787	A	A	153052787	1	1	212	0	1	0	0	0	0	0	0	0	7568	1218	42	4		4	IDH3G	23	153052787	Intron	SNP	G	TCGA-75-5122-01A-01D-1753-08	6045631	153052787	2217773	305	165571											
HES5	388585	broad.mit.edu	37	chr1	2461331	2461331	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatctccaggatgtcggcCttctccagcttggagttggg	13	12	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2461331	T	T	2461331	2	4	213	1	0	0	0	0	0	0	0	1	7136	680	24	4		4	HES5	1	2461331	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08		2461331	246789290	1	165572											
C1orf158	93190	broad.mit.edu	37	chr1	12819451	12819451	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattcagggtattcctctgcGttggtctgtaaagttgcaca	10	8	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12819451	A	A	12819451	1	1	213	0	1	0	0	0	0	0	0	0	2027	1160	40	4		4	C1orf158	1	12819451	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	10358120	12819451	236431170	2	165573											
FBXO42	54455	broad.mit.edu	37	chr1	16632321	16632321	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgagaagcgctgagtgattGgggttccaggataaggatag	17	5	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16632321	C	C	16632321	3	2	213	1	0	0	0	0	1	0	0	0	5808	1348	47	4	1841	4	FBXO42	1	16632321	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	3812870	16632321	232618300	3	165574											
ARHGEF10L	55160	broad.mit.edu	37	chr1	17939525	17939525	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctcctctcacctgctttCcttctgcctggccgcttggg	9	17	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17939525	T	T	17939525	1	4	213	0	1	0	0	0	0	0	0	0	897	870	30	4		4	ARHGEF10L	1	17939525	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1307204	17939525	231311096	4	165575											
C1orf128	57095	broad.mit.edu	37	chr1	24112241	24112241	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctttagtctgaaccgggatCttacaggagaattagagtat	10	7	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24112241	G	G	24112241	3	3	213	1	0	0	0	0	1	0	0	0	2015	913	32	4	411	4	C1orf128	1	24112241	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	6172716	24112241	225138380	5	165576											
GALE	2582	broad.mit.edu	37	chr1	24125393	24125393	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaccacggaaggcattatgGaagttatcgatgaccacagg	11	9	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24125393	C	C	24125393	3	2	213	1	0	0	0	0	1	0	0	0	6264	1165	41	4	981	4	GALE	1	24125393	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	13152	24125393	225125228	6	165577											
ZBTB8OS	339487	broad.mit.edu	37	chr1	33116092	33116092	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcgccttctgttcttcagtCaaattgtaatctctaacatc	4	11	5	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33116092	G	G	33116092	3	3	213	1	0	0	0	0	1	0	0	0	17683	825	29	4	492	4	ZBTB8OS	1	33116092	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	8990699	33116092	216134529	7	165578											
STK40	83931	broad.mit.edu	37	chr1	36809702	36809702	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctggctgccccccccacccCccgggaggcaggactcactc	11	21	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36809702	G	G	36809702	1	3	213	0	1	0	0	0	0	0	0	0	15425	638	22	4		4	STK40	1	36809702	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	3693610	36809702	212440919	8	165579											
MACF1	23499	broad.mit.edu	37	chr1	39696700	39696701	+	Intron	INS	-	A	A													tcagggccaaagaggaagttINScagctaggccaaaccttcct							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39696701	A	A	39696700	6	5	213	0	1	1	1	0	0	0	0	0	9232	1798	62	0		0	MACF1	1	39696700	Intron	INS	-	TCGA-75-5125-01A-01D-1753-08	2886998	39696700	209553921	9	165580											
KIAA0754	643314	broad.mit.edu	37	chr1	39877402	39877402	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctagttgagctacagaatCaaatctcttctgaagggctg	9	9	4	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39877402	G	G	39877402	3	3	213	1	0	0	0	0	1	0	0	0	8262	827	29	4	1467	4	KIAA0754	1	39877402	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	180702	39877402	209373219	10	165581											
RPS8	6202	broad.mit.edu	37	chr1	45241248	45241248	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtgaatctttgcggtttctCtttccagccagcgccgagcg	11	13	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45241248	G	G	45241248	1	3	213	0	1	0	0	0	0	0	0	0	13772	928	32	4		4	RPS8	1	45241248	5'UTR	SNP	C	TCGA-75-5125-01A-01D-1753-08	5363846	45241248	204009373	11	165582											
DNAJC6	9829	broad.mit.edu	37	chr1	65864391	65864391	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatatcttgggatcttgctgGggccatgcaggcttcaggga	15	8	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65864391	C	C	65864391	1	2	213	0	1	0	0	0	0	0	0	0	4693	1247	43	4		4	DNAJC6	1	65864391	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	20623143	65864391	183386230	12	165583											
TNNI3K	51086	broad.mit.edu	37	chr1	74834891	74834891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattttaaacaattgtagGttcttttgggaaagtatata	7	2	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74834891	T	T	74834891	3	4	213	1	0	0	0	0	1	0	0	0	16452	1275	44	3	1828	3	TNNI3K	1	74834891	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	8970500	74834891	174415730	13	165584											
SLC44A5	204962	broad.mit.edu	37	chr1	75683502	75683502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcaggtctcccccaacccCcaacccaatttattatcttc	2	18	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75683502	A	A	75683502	1	1	213	0	1	0	0	0	0	0	0	0	14753	638	22	2		2	SLC44A5	1	75683502	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	848611	75683502	173567119	14	165585											
ACADM	34	broad.mit.edu	37	chr1	76209732	76209732	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgtcagcattggcacatGtattctgggcctccttcaga	9	10	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76209732	T	T	76209732	1	4	213	0	1	0	0	0	0	0	0	0	113	1392	48	3		3	ACADM	1	76209732	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	526230	76209732	173040889	15	165586											
ELTD1	64123	broad.mit.edu	37	chr1	79387465	79387465	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatagactcctatacctatCtgtgacctgaaaaaaagata	5	9	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79387465	A	A	79387465	3	1	213	1	0	0	0	0	1	0	0	0	5126	913	32	3	1010	3	ELTD1	1	79387465	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3177733	79387465	169863156	16	165587											
WDR63	126820	broad.mit.edu	37	chr1	85561661	85561661	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgcttcaagttctgtccGagtgatcctaatatcattgc	7	10	4	1	rs139599532		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85561661	A	A	85561661	2	1	213	1	0	0	0	0	0	0	0	1	17441	1045	37	4		4	WDR63	1	85561661	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	6174196	85561661	163688960	17	165588											
GBP3	2635	broad.mit.edu	37	chr1	89478855	89478855	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaatgagtggaagtactacGaaggggacttacgaggccca	13	8	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89478855	A	A	89478855	1	1	213	0	1	0	0	0	0	0	0	0	6337	1073	37	4		4	GBP3	1	89478855	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3917194	89478855	159771766	18	165589											
RWDD3	25950	broad.mit.edu	37	chr1	95709848	95709848	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acctctggaattggtgttccAtttgccagtcaattatcctt	7	10	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95709848	G	G	95709848	3	3	213	1	0	0	0	0	1	0	0	0	13868	217	8	5	173	5	RWDD3	1	95709848	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	6230993	95709848	153540773	19	165590											
NBPF7	343505	broad.mit.edu	37	chr1	120382097	120382097	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agggagacctagctgattttGacaggcggcattaagagagt	14	6	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120382097	A	A	120382097	1	1	213	0	1	0	0	0	0	0	0	0	10293	1305	45	4		4	NBPF7	1	120382097	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	24672249	120382097	128868524	20	165591											
NBPF9	400818	broad.mit.edu	37	chr1	144828375	144828375	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcattgttttctacctggcCctgttctatcccaacataaa	4	12	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144828375	T	T	144828375	1	4	213	0	1	0	0	0	0	0	0	0	10294	638	22	4		4	NBPF9	1	144828375	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	24446278	144828375	104422246	21	165592											
TARS2	80222	broad.mit.edu	37	chr1	150459923	150459923	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtaggcactggtgtgaagGaacatggccctgtatcagag	14	7	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150459923	T	T	150459923	1	4	213	0	1	0	0	0	0	0	0	0	15679	1189	41	3		3	TARS2	1	150459923	5'UTR	SNP	G	TCGA-75-5125-01A-01D-1753-08	5631548	150459923	98790698	22	165593											
RFX5	5993	broad.mit.edu	37	chr1	151318885	151318885	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggccccagggcactcCtcatctctttacccagaaag	8	15	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151318885	T	T	151318885	1	4	213	0	1	0	0	0	0	0	0	0	13374	696	24	4		4	RFX5	1	151318885	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	858962	151318885	97931736	23	165594											
SMG5	23381	broad.mit.edu	37	chr1	156238164	156238164	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccttgtcatacagccgcttGaggttcccataggctccctc	9	15	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156238164	C	C	156238164	2	2	213	1	0	0	0	0	0	0	0	1	14910	1277	45	4		4	SMG5	1	156238164	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	4919279	156238164	93012457	24	165595											
INSRR	3645	broad.mit.edu	37	chr1	156810666	156810666	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagggaatgaggtgcccctCagtgccctggacccccattt	11	15	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156810666	T	T	156810666	1	4	213	0	1	0	0	0	0	0	0	0	7844	840	29	4		4	INSRR	1	156810666	3'UTR	SNP	C	TCGA-75-5125-01A-01D-1753-08	572502	156810666	92439955	25	165596											
CD1E	913	broad.mit.edu	37	chr1	158326239	158326239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgggaaatctcagcttgGtggaatagagtattttaggg	13	3	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158326239	T	T	158326239	1	4	213	0	1	0	0	0	0	0	0	0	3008	1276	44	3		3	CD1E	1	158326239	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1515573	158326239	90924382	26	165597											
C1orf192	257177	broad.mit.edu	37	chr1	161337544	161337544	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actctcagctatctgttcaaAgatcagaatcctatgagagg	8	9	4	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161337544	T	T	161337544	1	4	213	0	1	0	0	0	0	0	0	0	2044	87	3	5		5	C1orf192	1	161337544	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	3011305	161337544	87913077	27	165598											
SELP	6403	broad.mit.edu	37	chr1	169563826	169563826	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattaagcagggggaaaccCggggatggaaagcaagacca	14	7	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169563826	T	T	169563826	1	4	213	0	1	0	0	0	0	0	0	0	14132	667	23	4		4	SELP	1	169563826	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	8226282	169563826	79686795	28	165599											
ASTN1	460	broad.mit.edu	37	chr1	176914972	176914972	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catatcatatttaccctgctCcaacatataaagctttatgc	3	11	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176914972	A	A	176914972	1	1	213	0	1	0	0	0	0	0	0	0	1068	870	30	3		3	ASTN1	1	176914972	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	7351146	176914972	72335649	29	165600											
ASTN1	460	broad.mit.edu	37	chr1	177030187	177030187	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtaacataagctatggcctGagaggctaaggctgttctgc	13	8	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177030187	A	A	177030187	1	1	213	0	1	0	0	0	0	0	0	0	1068	1305	45	4		4	ASTN1	1	177030187	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	115215	177030187	72220434	30	165601											
MR1	3140	broad.mit.edu	37	chr1	181021374	181021374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagcttcttcttcctagagcCcccactggtcagagtaaatc	7	13	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181021374	A	A	181021374	3	1	213	1	0	0	0	0	1	0	0	0	9846	623	22	2	622	2	MR1	1	181021374	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3991187	181021374	68229247	31	165602											
HMCN1	83872	broad.mit.edu	37	chr1	186143844	186143844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccttaccaactcgcttaGggccactttctctatcctca	5	15	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186143844	T	T	186143844	1	4	213	0	1	0	0	0	0	0	0	0	7287	1015	35	2		2	HMCN1	1	186143844	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	5122470	186143844	63106777	32	165603											
CACNA1S	779	broad.mit.edu	37	chr1	201046189	201046190	+	Frame_Shift_Ins	INS	-	G	G													agaggaagagcagcagcagcINSagggaggcgatggagcggat							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201046190	G	G	201046189	7	5	213	1	0	1	1	0	0	0	0	0	2573	697	25	0	4067	0	CACNA1S	1	201046189	Frame_Shift_Ins	INS	-	TCGA-75-5125-01A-01D-1753-08	14902345	201046189	48204432	33	165604											
ELF3	1999	broad.mit.edu	37	chr1	201980437	201980437	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagggtacaggtgggtctcAgcggggtgggatggggcacg	23	6	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201980437	C	C	201980437	1	2	213	0	1	0	0	0	0	0	0	0	5097	203	7	5		5	ELF3	1	201980437	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	934248	201980437	47270184	34	165605											
OPTC	26254	broad.mit.edu	37	chr1	203465262	203465262	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggcgattcctttgaagtTctgcctctgcggaatgatgt	12	8	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	203465262	C	C	203465262	2	2	213	1	0	0	0	0	0	0	0	1	10982	1770	62	5		5	OPTC	1	203465262	Silent	SNP	T	TCGA-75-5125-01A-01D-1753-08	1484825	203465262	45785359	35	165606											
CDK18	5129	broad.mit.edu	37	chr1	205496951	205496951	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccagctgctccggggcctCgcctactgtcaccaccgcaa	9	18	1	0	rs139419406	byFrequency	TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205496951	T	T	205496951	2	4	213	1	0	0	0	0	0	0	0	1	3164	871	31	4		4	CDK18	1	205496951	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	2031689	205496951	43753670	36	165607											
SLC45A3	85414	broad.mit.edu	37	chr1	205632781	205632803	+	Intron	DEL	GGACAAGTAAAGGGCAAGGGGAA	-	-													gtagtatgagtcaatggctgGgacaagtaaagggcaagggg					rs41313722		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	205632803	-	-	205632781	6	5	213	0	1	1	0	1	0	0	0	0	14756	1247	43	0		0	SLC45A3	1	205632781	Intron	DEL	GGACAAGTAAAGGGCAAGGGGAA	TCGA-75-5125-01A-01D-1753-08	135830	205632781	43617840	37	165608											
SRGAP2	23380	broad.mit.edu	37	chr1	206566861	206566861	+	Intron	DEL	A	-	-													ttagagaacaagccccccttAaaaaaaaaaaggtaaaagtg					rs33922845		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	206566861	-	-	206566861	6	5	213	0	1	1	0	1	0	0	0	0	15264	377	13	0		0	SRGAP2	1	206566861	Intron	DEL	A	TCGA-75-5125-01A-01D-1753-08	934080	206566861	42683760	38	165609											
LAMB3	3914	broad.mit.edu	37	chr1	209796388	209796388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctcagccacctgccccGccatcaagaaggccccaccg	9	20	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209796388	A	A	209796388	3	1	213	1	0	0	0	0	1	0	0	0	8684	1087	38	4	1051	4	LAMB3	1	209796388	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	3229527	209796388	39454233	39	165610											
SYT14	255928	broad.mit.edu	37	chr1	210126112	210126112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attagaaaaggtaagtcattGctctgcatggctatttacat	8	6	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210126112	T	T	210126112	1	4	213	0	1	0	0	0	0	0	0	0	15589	1334	46	3		3	SYT14	1	210126112	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	329724	210126112	39124509	40	165611											
IARS2	55699	broad.mit.edu	37	chr1	220315073	220315073	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actaggaataaactcaacctGaggcaggtcccatctaggtg	10	10	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220315073	A	A	220315073	1	1	213	0	1	0	0	0	0	0	0	0	7544	1305	45	4		4	IARS2	1	220315073	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	10188961	220315073	28935548	41	165612											
CAPN9	10753	broad.mit.edu	37	chr1	230907903	230907903	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtgtggggccagagctGgcttgtgcagacatgtgaag	19	7	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230907903	A	A	230907903	1	1	213	0	1	0	0	0	0	0	0	0	2658	1363	47	4		4	CAPN9	1	230907903	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	10592830	230907903	18342718	42	165613											
PCNXL2	80003	broad.mit.edu	37	chr1	233424740	233424741	+	Intron	INS	-	A	A													aaatgaaccttcatgagccgINSgctgccatctagtttcacgc							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233424741	A	A	233424740	6	5	213	0	1	1	1	0	0	0	0	0	11686	1131	39	0		0	PCNXL2	1	233424740	Intron	INS	-	TCGA-75-5125-01A-01D-1753-08	2516837	233424740	15825881	43	165614											
ACTN2	88	broad.mit.edu	37	chr1	236894581	236894581	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggaaatcgctgagaagCacctggatattcctaaaatg	9	9	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236894581	A	A	236894581	3	1	213	1	0	0	0	0	1	0	0	0	205	710	25	3	690	3	ACTN2	1	236894581	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3469841	236894581	12356040	44	165615											
TRIM58	25893	broad.mit.edu	37	chr1	248031290	248031290	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtcacaaggctggaaGcagagaacatccccatggaa	12	10	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248031290	T	T	248031290	3	4	213	1	0	0	0	0	1	0	0	0	16656	971	34	3	814	3	TRIM58	1	248031290	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11136709	248031290	1219331	45	165616											
FAM84A	151354	broad.mit.edu	37	chr2	14774863	14774863	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacctgggagagaacaagGtccacaccgccaggtttcac	11	13	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14774863	A	A	14774863	3	1	213	1	0	0	0	0	1	0	0	0	5694	1261	44	4	762	4	FAM84A	2	14774863	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08		14774863	228424510	46	165617											
CAD	790	broad.mit.edu	37	chr2	27459323	27459323	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaagggctaccgcaccCgacgcttggccgctgacttc	10	17	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27459323	A	A	27459323	2	1	213	1	0	0	0	0	0	0	0	1	2591	644	23	1		1	CAD	2	27459323	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	12684460	27459323	215740050	47	165618											
CAD	790	broad.mit.edu	37	chr2	27465212	27465212	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccagtgatcaatgctgggGatggggtcggagagcacccc	17	10	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27465212	A	A	27465212	3	1	213	1	0	0	0	0	1	0	0	0	2591	1174	41	4	6297	4	CAD	2	27465212	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	5889	27465212	215734161	48	165619											
EML4	27436	broad.mit.edu	37	chr2	42522220	42522220	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaattgatacttgaaggaGataaggatatacattcatct	8	4	2	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42522220	C	C	42522220	1	2	213	0	1	0	0	0	0	0	0	0	5141	957	33	4		4	EML4	2	42522220	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	15057008	42522220	200677153	49	165620											
PSME4	23198	broad.mit.edu	37	chr2	54127099	54127099	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taagcaatatctggttgataGaggggttttttgactgttga	12	3	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54127099	T	T	54127099	3	4	213	1	0	0	0	0	1	0	0	0	12815	942	33	3	2262	3	PSME4	2	54127099	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11604879	54127099	189072274	50	165621											
ARHGAP25	9938	broad.mit.edu	37	chr2	69009336	69009336	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatattaaattgctgcttaTccttaaggcctgacttttca	5	8	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69009336	A	A	69009336	1	1	213	0	1	0	0	0	0	0	0	0	876	1450	50	5		5	ARHGAP25	2	69009336	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	14882237	69009336	174190037	51	165622											
ATP6V1B1	525	broad.mit.edu	37	chr2	71170774	71170774	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgagacccctactcaccccCgcccctcccccagcctacag	6	23	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71170774	A	A	71170774	1	1	213	0	1	0	0	0	0	0	0	0	1182	667	23	1		1	ATP6V1B1	2	71170774	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	2161438	71170774	172028599	52	165623											
RPIA	22934	broad.mit.edu	37	chr2	89036090	89036090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cggggatcagtggcacaaggGaatccccatcgaggtcatcc	13	12	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89036090	T	T	89036090	3	4	213	1	0	0	0	0	1	0	0	0	13664	1174	41	3	661	3	RPIA	2	89036090	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	17865316	89036090	154163283	53	165624											
FAM123C	205147	broad.mit.edu	37	chr2	131520209	131520209	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcctgccctccccaggGgacccgtcagaccctggggg	13	16	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131520209	A	A	131520209	2	1	213	1	0	0	0	0	0	0	0	1	5470	1219	43	4		4	FAM123C	2	131520209	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	42484119	131520209	111679164	54	165625											
LRP1B	53353	broad.mit.edu	37	chr2	141242964	141242964	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacttcagccttttgctaaCgagtatagtagggtacaagc	9	8	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141242964	T	T	141242964	3	4	213	1	0	0	0	0	1	0	0	0	9042	536	19	4	4558	4	LRP1B	2	141242964	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	9722755	141242964	101956409	55	165626											
GALNT13	114805	broad.mit.edu	37	chr2	155143788	155143788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaactccaagacagcagaGctgatccccaactcactggc	9	15	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155143788	T	T	155143788	1	4	213	0	1	0	0	0	0	0	0	0	6273	986	34	3		3	GALNT13	2	155143788	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	13900824	155143788	88055585	56	165627											
XIRP2	129446	broad.mit.edu	37	chr2	168101882	168101882	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actctatgcaattcaagaccGagaagggtcctatcatgaag	9	9	3	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168101882	A	A	168101882	3	1	213	1	0	0	0	0	1	0	0	0	17557	1058	37	4	4010	4	XIRP2	2	168101882	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	12958094	168101882	75097491	57	165628											
XIRP2	129446	broad.mit.edu	37	chr2	168107923	168107923	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagatggttcagggaatttGagcatggcccagtttctgaa	12	7	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168107923	C	C	168107923	3	2	213	1	0	0	0	0	1	0	0	0	17557	1291	45	4	10051	4	XIRP2	2	168107923	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	6041	168107923	75091450	58	165629											
LRP2	4036	broad.mit.edu	37	chr2	169995974	169995974	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accactccttcaaagactggGttaagtagaaaagctgtgac	9	9	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169995974	C	C	169995974	1	2	213	0	1	0	0	0	0	0	0	0	9043	1276	44	4		4	LRP2	2	169995974	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1888051	169995974	73203399	59	165630											
ITGA6	3655	broad.mit.edu	37	chr2	173338872	173338872	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccaatcacagtggagccGtggttttgctgaagagagac	14	8	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173338872	A	A	173338872	3	1	213	1	0	0	0	0	1	0	0	0	7950	1145	40	4	887	4	ITGA6	2	173338872	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	3342898	173338872	69860501	60	165631											
SESTD1	91404	broad.mit.edu	37	chr2	179974756	179974756	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccaaaatattgttcggttCtaaaaatcaaaacacacaga	4	9	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179974756	G	G	179974756	1	3	213	0	1	0	0	0	0	0	0	0	14240	927	32	4		4	SESTD1	2	179974756	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	6635884	179974756	63224617	61	165632											
GLS	2744	broad.mit.edu	37	chr2	191769787	191769787	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtcctgtgtaaaacctttGaaatatgccattgctgttaa	7	8	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	191769787	C	C	191769787	3	2	213	1	0	0	0	0	1	0	0	0	6527	1281	45	4	895	4	GLS	2	191769787	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11795031	191769787	51429586	62	165633											
PARD3B	117583	broad.mit.edu	37	chr2	206305415	206305415	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtaataaacttagtgaaaGataaatgtagctttaattca	7	3	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	206305415	A	A	206305415	1	1	213	0	1	0	0	0	0	0	0	0	11538	957	33	4		4	PARD3B	2	206305415	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	14535628	206305415	36893958	63	165634											
PIKFYVE	200576	broad.mit.edu	37	chr2	209198190	209198190	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tgattatcaccagtatttctCctataaccagatggtggcgt	8	9	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	209198190	G	G	209198190	3	3	213	1	0	0	0	0	1	0	0	0	12019	855	30	4	4216	4	PIKFYVE	2	209198190	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	2892775	209198190	34001183	64	165635											
GMPPA	29926	broad.mit.edu	37	chr2	220369975	220369975	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcaccaggcttgtggccaGgggcaggtaccatccgccta	12	14	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220369975	T	T	220369975	3	4	213	1	0	0	0	0	1	0	0	0	6558	1000	35	2	672	2	GMPPA	2	220369975	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11171785	220369975	22829398	65	165636											
DOCK10	55619	broad.mit.edu	37	chr2	225796406	225796406	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagaaaaagaaaatatgGtattaatcactgacatacac	6	6	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225796406	T	T	225796406	1	4	213	0	1	0	0	0	0	0	0	0	4725	1276	44	3		3	DOCK10	2	225796406	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	5426431	225796406	17402967	66	165637											
CXCR7	57007	broad.mit.edu	37	chr2	237489712	237489712	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actgccggtccttctaccccGagcacagcatcaaggagtgg	11	14	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237489712	A	A	237489712	3	1	213	1	0	0	0	0	1	0	0	0	4129	1059	37	4	606	4	CXCR7	2	237489712	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11693306	237489712	5709661	67	165638											
CHL1	10752	broad.mit.edu	37	chr3	443339	443339	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagatttgcatccagaccCagaaattcagtcagtaaaag	9	8	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	443339	A	A	443339	3	1	213	1	0	0	0	0	1	0	0	0	3380	594	21	2	3514	2	CHL1	3	443339	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08		443339	197579091	68	165639											
TRNT1	51095	broad.mit.edu	37	chr3	3188226	3188226	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caggagaaaggatttgggtgGaactgaaaaaaattcttgtt	12	3	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3188226	C	C	3188226	3	2	213	1	0	0	0	0	1	0	0	0	16698	1175	41	4	739	4	TRNT1	3	3188226	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	2744887	3188226	194834204	69	165640											
ARPC4	10093	broad.mit.edu	37	chr3	9839247	9839247	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcttaagagccttgcaccctCagtgctacctggcttcatgg	9	13	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9839247	A	A	9839247	1	1	213	0	1	0	0	0	0	0	0	0	977	841	29	3		3	ARPC4	3	9839247	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	6651021	9839247	188183183	70	165641											
MLH1	4292	broad.mit.edu	37	chr3	37038071	37038071	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaatatgtacattagagtaGttgcagactgataaattatt	7	3	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37038071	C	C	37038071	1	2	213	0	1	0	0	0	0	0	0	0	9710	1044	36	4		4	MLH1	3	37038071	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	27198824	37038071	160984359	71	165642											
MYD88	4615	broad.mit.edu	37	chr3	38181459	38181459	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccacggacagcagagctgGcgggcatcaccacacttgat	11	14	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38181459	A	A	38181459	3	1	213	1	0	0	0	0	1	0	0	0	10117	1203	42	4	478	4	MYD88	3	38181459	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	1143388	38181459	159840971	72	165643											
RPSA	3921	broad.mit.edu	37	chr3	39452305	39452305	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caattgctggccgcttcactCctggaaccttcactaaccag	7	15	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39452305	A	A	39452305	3	1	213	1	0	0	0	0	1	0	0	0	13774	855	30	3	323	3	RPSA	3	39452305	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	1270846	39452305	158570125	73	165644											
KLHL18	23276	broad.mit.edu	37	chr3	47371349	47371349	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaggttaagaatttgttttCattctgtggctctacccaga	9	7	3	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47371349	T	T	47371349	1	4	213	0	1	0	0	0	0	0	0	0	8444	841	29	4		4	KLHL18	3	47371349	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	7919044	47371349	150651081	74	165645											
DZIP3	9666	broad.mit.edu	37	chr3	108403121	108403121	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctttagacccatacttaCtgttcctcaaatgcctgcag	5	12	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108403121	T	T	108403121	3	4	213	1	0	0	0	0	1	0	0	0	4905	565	20	4	3044	4	DZIP3	3	108403121	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	61031772	108403121	89619309	75	165646											
GPR156	165829	broad.mit.edu	37	chr3	119912332	119912332	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgccttggggccaaagaCctacgagaccaaagcttcct	9	12	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119912332	T	T	119912332	1	4	213	0	1	0	0	0	0	0	0	0	6726	522	18	4		4	GPR156	3	119912332	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	11509211	119912332	78110098	76	165647											
KALRN	8997	broad.mit.edu	37	chr3	124153192	124153192	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccttgcagaagacgcaccaGagtgccctgcaggtacagca	11	13	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124153192	C	C	124153192	3	2	213	1	0	0	0	0	1	0	0	0	8045	933	33	4	2928	4	KALRN	3	124153192	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	4240860	124153192	73869238	77	165648											
MRPS22	56945	broad.mit.edu	37	chr3	139071429	139071429	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	catgctaatcagtgtacgttGaataatgctgcatacttctt	7	8	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139071429	A	A	139071429	1	1	213	0	1	0	0	0	0	0	0	0	9927	1305	45	4		4	MRPS22	3	139071429	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	14918237	139071429	58951001	78	165649											
VPS8	23355	broad.mit.edu	37	chr3	184769583	184769583	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacagcactgtctctcatGtatctgaagcagtggattca	8	10	4	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184769583	T	T	184769583	1	4	213	0	1	0	0	0	0	0	0	0	17345	1392	48	3		3	VPS8	3	184769583	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	45698154	184769583	13252847	79	165650											
HRG	3273	broad.mit.edu	37	chr3	186392679	186392679	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaccacagcaactttaGtgatacccttcaccacctgc	4	14	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186392679	T	T	186392679	1	4	213	0	1	0	0	0	0	0	0	0	7421	1044	36	3		3	HRG	3	186392679	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1623096	186392679	11629751	80	165651											
ATP13A3	79572	broad.mit.edu	37	chr3	194162269	194162269	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacagggcttttctggttttGtaattaaaaaaaaaatcttt	6	4	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	194162269	C	C	194162269	1	2	213	0	1	0	0	0	0	0	0	0	1129	1392	48	4		4	ATP13A3	3	194162269	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	7769590	194162269	3860161	81	165652											
MUC4	4585	broad.mit.edu	37	chr3	195487840	195487840	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgcagggccagggtgtcAtagatgcatgagctatctcc	13	10	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	195487840	T	T	195487840	4	4	213	1	0	0	0	0	0	1	0	0	10072	224	8	5	1515	5	MUC4	3	195487840	Nonsense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	1325571	195487840	2534590	82	165653											
ADD1	118	broad.mit.edu	37	chr4	2899891	2899891	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggttttccttcttcatGgcgaccatttggtctctagg	9	12	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2899891	A	A	2899891	1	1	213	0	1	0	0	0	0	0	0	0	304	1363	47	4		4	ADD1	4	2899891	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08		2899891	188254385	83	165654											
GRK4	2868	broad.mit.edu	37	chr4	3011428	3011428	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagagttctaggaaaaggcgGatttggagaggtgagtaacg	16	4	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3011428	C	C	3011428	3	2	213	1	0	0	0	0	1	0	0	0	6857	1174	41	4	616	4	GRK4	4	3011428	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	111537	3011428	188142848	84	165655											
BOD1L	259282	broad.mit.edu	37	chr4	13605270	13605270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgctgctaatttttcttctCctttggccatttcttgtgac	6	10	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13605270	A	A	13605270	3	1	213	1	0	0	0	0	1	0	0	0	1489	855	30	3	5969	3	BOD1L	4	13605270	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	10593842	13605270	177549006	85	165656											
CPEB2	132864	broad.mit.edu	37	chr4	15018944	15018944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatatgtttatattatacacCaatttgcttatcttactagt	3	6	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15018944	T	T	15018944	1	4	213	0	1	0	0	0	0	0	0	0	3833	609	21	4		4	CPEB2	4	15018944	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1413674	15018944	176135332	86	165657											
ARAP2	116984	broad.mit.edu	37	chr4	36093481	36093481	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacccacacaaataaaaatgTacgcatgttcaaatactata	3	9	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36093481	A	A	36093481	1	1	213	0	1	0	0	0	0	0	0	0	841	1653	57	5		5	ARAP2	4	36093481	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	21074537	36093481	155060795	87	165658											
PHOX2B	8929	broad.mit.edu	37	chr4	41747973	41747973	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgtccagggcccccagCcgcagccaggcctccagctg	12	19	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41747973	T	T	41747973	3	4	213	1	0	0	0	0	1	0	0	0	11954	739	26	4	152	4	PHOX2B	4	41747973	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	5654492	41747973	149406303	88	165659											
LRRC66	339977	broad.mit.edu	37	chr4	52860700	52860700	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctgctgccttggattgaaGagctgtgtcataatcataag	10	7	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52860700	C	C	52860700	3	2	213	1	0	0	0	0	1	0	0	0	9105	942	33	4	158	4	LRRC66	4	52860700	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11112727	52860700	138293576	89	165660											
PDGFRA	5156	broad.mit.edu	37	chr4	55138624	55138624	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactgggggacagacggtgaGgtgcacagctgaaggcacgc	17	9	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55138624	C	C	55138624	3	2	213	1	0	0	0	0	1	0	0	0	11755	1000	35	4	1331	4	PDGFRA	4	55138624	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	2277924	55138624	136015652	90	165661											
MUC7	4589	broad.mit.edu	37	chr4	71347553	71347553	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgatttcttttatatatgaaGaatctactaaacagaattat	4	5	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71347553	T	T	71347553	3	4	213	1	0	0	0	0	1	0	0	0	10075	933	33	3	1098	3	MUC7	4	71347553	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	16208929	71347553	119806723	91	165662											
ANKRD17	26057	broad.mit.edu	37	chr4	73956685	73956685	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtacttaaggtcgaaggTagctggacagaagagggaac	15	5	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73956685	C	C	73956685	2	2	213	1	0	0	0	0	0	0	0	1	646	1625	57	5		5	ANKRD17	4	73956685	Silent	SNP	T	TCGA-75-5125-01A-01D-1753-08	2609132	73956685	117197591	92	165663											
CCDC158	339965	broad.mit.edu	37	chr4	77244586	77244586	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagaaaattgcttagatgtGatattaaaagtctactcaac	6	5	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77244586	A	A	77244586	1	1	213	0	1	0	0	0	0	0	0	0	2817	1305	45	4		4	CCDC158	4	77244586	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3287901	77244586	113909690	93	165664											
HPSE	10855	broad.mit.edu	37	chr4	84216631	84216631	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgatcatccaccatctttaGagttagaccattgagttgga	8	8	2	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84216631	A	A	84216631	2	1	213	1	0	0	0	0	0	0	0	1	7411	933	33	4		4	HPSE	4	84216631	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	6972045	84216631	106937645	94	165665											
PDLIM5	10611	broad.mit.edu	37	chr4	95575565	95575565	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatatccaggctaactctAgaaattttattctcaaactt	3	10	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95575565	G	G	95575565	1	3	213	0	1	0	0	0	0	0	0	0	11777	435	15	5		5	PDLIM5	4	95575565	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	11358934	95575565	95578711	95	165666											
LRIT3	345193	broad.mit.edu	37	chr4	110791170	110791170	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctcctccactgtttcttCaaccacaactctgagcacaa	3	17	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110791170	G	G	110791170	4	3	213	1	0	0	0	0	0	1	0	0	9036	838	29	4	1140	4	LRIT3	4	110791170	Nonsense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	15215605	110791170	80363106	96	165667											
ANK2	287	broad.mit.edu	37	chr4	114257151	114257151	+	Frame_Shift_Del	DEL	C	-	-													tactgagcagcacagtggtgCcccaggtgcaggccgtcttc							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	114257151	-	-	114257151	7	5	213	1	0	1	0	1	0	0	0	0	621	739	26	0	3712	0	ANK2	4	114257151	Frame_Shift_Del	DEL	C	TCGA-75-5125-01A-01D-1753-08	3465981	114257151	76897125	97	165668											
ANXA5	308	broad.mit.edu	37	chr4	122602924	122602924	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgttccagctccctgtttgGagattttaatagagaaaaca	8	7	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122602924	C	C	122602924	1	2	213	0	1	0	0	0	0	0	0	0	721	1189	41	4		4	ANXA5	4	122602924	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	8345773	122602924	68551352	98	165669											
KIAA1109	84162	broad.mit.edu	37	chr4	123145928	123145928	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgcctgtttgaatgttcaTtgcatttccactgatggcat	8	8	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123145928	G	G	123145928	1	3	213	0	1	0	0	0	0	0	0	0	8278	1508	52	5		5	KIAA1109	4	123145928	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	543004	123145928	68008348	99	165670											
KIAA1109	84162	broad.mit.edu	37	chr4	123258169	123258169	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgttgtggtttatgtacgAgttcaggtgacatacttcat	11	5	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123258169	T	T	123258169	2	4	213	1	0	0	0	0	0	0	0	1	8278	291	11	5		5	KIAA1109	4	123258169	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	112241	123258169	67896107	100	165671											
ADAD1	132612	broad.mit.edu	37	chr4	123317479	123317479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcaactaatttctaatcGttcagaatacctgaaatata	3	7	3	2	rs113377246		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123317479	T	T	123317479	3	4	213	1	0	0	0	0	1	0	0	0	231	1145	40	3	689	3	ADAD1	4	123317479	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	59310	123317479	67836797	101	165672											
OTUD4	54726	broad.mit.edu	37	chr4	146059096	146059096	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaatgccgtatctgcctttCgtgtctgggaagattgctct	10	11	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146059096	T	T	146059096	3	4	213	1	0	0	0	0	1	0	0	0	11408	884	31	4	517	4	OTUD4	4	146059096	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	22741617	146059096	45095180	102	165673											
DCHS2	54798	broad.mit.edu	37	chr4	155256122	155256122	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcaaactcagcaggtgccaGagttgtctggaaaatgtgta	11	7	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155256122	C	C	155256122	3	2	213	1	0	0	0	0	1	0	0	0	4321	933	33	4	7804	4	DCHS2	4	155256122	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	9197026	155256122	35898154	103	165674											
MORF4	10934	broad.mit.edu	37	chr4	174537490	174537490	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtcctcaagaatggaatccAcattcttctcggcaggaaga	9	10	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	174537490	T	T	174537490	3	4	213	1	0	0	0	0	1	0	0	0	9799	159	6	5	405	5	MORF4	4	174537490	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	19281368	174537490	16616786	104	165675											
LRRC14B	389257	broad.mit.edu	37	chr5	192565	192565	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcttgggtgagtcttgggGaggggactgagggcgggctg	22	6	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192565	A	A	192565	1	1	213	0	1	0	0	0	0	0	0	0	9056	1189	41	4		4	LRRC14B	5	192565	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08		192565	180722695	105	165676											
TERT	7015	broad.mit.edu	37	chr5	1278792	1278792	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcggacgtgcccatgggcGgccttctggaccacggcata	14	13	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1278792	A	A	1278792	2	1	213	1	0	0	0	0	0	0	0	1	15886	1103	39	4		4	TERT	5	1278792	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	1086227	1278792	179636468	106	165677											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239469	5239469	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagagcttgaggtgacagtGaaaacagcaggacttccttc	12	9	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5239469	C	C	5239469	1	2	213	0	1	0	0	0	0	0	0	0	261	1305	45	4		4	ADAMTS16	5	5239469	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3960677	5239469	175675791	107	165678											
C5orf42	65250	broad.mit.edu	37	chr5	37180987	37180987	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attttgacaagatttattctGaccatttctttcctcagttc	4	9	3	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37180987	A	A	37180987	4	1	213	1	0	0	0	0	0	1	0	0	2324	1299	45	4	4155	4	C5orf42	5	37180987	Nonsense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	31941518	37180987	143734273	108	165679											
WDR70	55100	broad.mit.edu	37	chr5	37379308	37379308	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cggtagggcggtgccgcgcaGaaagccgcggtccctctgcg	17	14	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37379308	A	A	37379308	1	1	213	0	1	0	0	0	0	0	0	0	17448	957	33	4		4	WDR70	5	37379308	5'Flank	SNP	G	TCGA-75-5125-01A-01D-1753-08	198321	37379308	143535952	109	165680											
ZNF131	7690	broad.mit.edu	37	chr5	43175096	43175096	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaaccaagaggagagagAgtctagccaagcagatgctg	13	8	1	5			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43175096	G	G	43175096	3	3	213	1	0	0	0	0	1	0	0	0	17847	304	11	5	1657	5	ZNF131	5	43175096	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	5795788	43175096	137740164	110	165681											
UTP15	84135	broad.mit.edu	37	chr5	72875088	72875088	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaacaaatctgttttaAggattttttttttaagttta	6	2	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72875088	T	T	72875088	1	4	213	0	1	0	0	0	0	0	0	0	17224	87	3	5		5	UTP15	5	72875088	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	29699992	72875088	108040172	111	165682											
VCAN	1462	broad.mit.edu	37	chr5	82834300	82834300	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgaccactctcccacgTagtcctgcctctgtctttat	8	15	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82834300	C	C	82834300	2	2	213	1	0	0	0	0	0	0	0	1	17265	1625	57	5		5	VCAN	5	82834300	Silent	SNP	T	TCGA-75-5125-01A-01D-1753-08	9959212	82834300	98080960	112	165683											
FAM174A	345757	broad.mit.edu	37	chr5	99871346	99871346	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtcctgctgcaggcagccGaggccgcgccaggtcttggg	16	14	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99871346	A	A	99871346	3	1	213	1	0	0	0	0	1	0	0	0	5540	1059	37	4	114	4	FAM174A	5	99871346	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	17037046	99871346	81043914	113	165684											
PCDHA7	56141	broad.mit.edu	37	chr5	140215724	140215724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttgtgccgcggtctgtgGgcgcgggccatgtggtggcg	20	10	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140215724	T	T	140215724	3	4	213	1	0	0	0	0	1	0	0	0	11623	1232	43	2	1758	2	PCDHA7	5	140215724	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	40344378	140215724	40699536	114	165685											
PCDHB16	57717	broad.mit.edu	37	chr5	140563600	140563600	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caacgcccaggtcacctactCgctgctgccgccccaggacc	9	20	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140563600	T	T	140563600	3	4	213	1	0	0	0	0	1	0	0	0	11635	893	31	4	1468	4	PCDHB16	5	140563600	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	347876	140563600	40351660	115	165686											
PCDHGB1	56104	broad.mit.edu	37	chr5	140731741	140731741	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgcggcccgccagcgcctGctggtcgctgtgcgtgatgg	17	14	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140731741	T	T	140731741	2	4	213	1	0	0	0	0	0	0	0	1	11656	1306	46	3		3	PCDHGB1	5	140731741	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	168141	140731741	40183519	116	165687											
PCDHGA12	26025	broad.mit.edu	37	chr5	140811194	140811194	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggacgacaaggcggccCaagttttcaaactagattgt	11	8	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140811194	T	T	140811194	4	4	213	1	0	0	0	0	0	1	0	0	11647	595	21	4	870	4	PCDHGA12	5	140811194	Nonsense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	79453	140811194	40104066	117	165688											
PCDH1	5097	broad.mit.edu	37	chr5	141248314	141248314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcataggagtcccagcgCtcacggtccaggttgcccat	12	13	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141248314	A	A	141248314	3	1	213	1	0	0	0	0	1	0	0	0	11600	796	28	3	3090	3	PCDH1	5	141248314	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	437120	141248314	39666946	118	165689											
PRELID2	153768	broad.mit.edu	37	chr5	145175888	145175888	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattatttttgcatatatttGtttattaactatatgttttt	4	2	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145175888	A	A	145175888	1	1	213	0	1	0	0	0	0	0	0	0	12578	1392	48	4		4	PRELID2	5	145175888	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3927574	145175888	35739372	119	165690											
JAKMIP2	9832	broad.mit.edu	37	chr5	147009296	147009296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagctgctttatgagatcaGggatgttcacatcctgcaaa	9	9	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147009296	T	T	147009296	3	4	213	1	0	0	0	0	1	0	0	0	8011	1000	35	2	571	2	JAKMIP2	5	147009296	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	1833408	147009296	33905964	120	165691											
MFAP3	4238	broad.mit.edu	37	chr5	153429449	153429449	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actctcagcaagttcccactCggatgatgatgtcatcatag	8	11	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153429449	G	G	153429449	3	3	213	1	0	0	0	0	1	0	0	0	9608	893	31	4	169	4	MFAP3	5	153429449	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	6420153	153429449	27485811	121	165692											
TIMD4	91937	broad.mit.edu	37	chr5	156353318	156353318	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctcaggaactgctgtatCagatgctgggaaggaaaaga	13	7	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156353318	T	T	156353318	3	4	213	1	0	0	0	0	1	0	0	0	16026	826	29	4	302	4	TIMD4	5	156353318	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	2923869	156353318	24561942	122	165693											
CCNJL	79616	broad.mit.edu	37	chr5	159680453	159680453	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcttccataggtggtggCgaggcagtgcctgggctcag	17	10	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159680453	A	A	159680453	3	1	213	1	0	0	0	0	1	0	0	0	2959	768	27	3	71	3	CCNJL	5	159680453	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3327135	159680453	21234807	123	165694											
ZNF346	23567	broad.mit.edu	37	chr5	176467988	176467988	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatgagtcacggtggcagtAggaaaggctggctgaggtct	17	7	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176467988	T	T	176467988	1	4	213	0	1	0	0	0	0	0	0	0	17986	435	15	5		5	ZNF346	5	176467988	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	16787535	176467988	4447272	124	165695											
MGAT1	4245	broad.mit.edu	37	chr5	180219003	180219003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggtgctggtcaaagaaCtgcccgtggctcacaccctt	11	12	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180219003	A	A	180219003	3	1	213	1	0	0	0	0	1	0	0	0	9635	564	20	3	372	3	MGAT1	5	180219003	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3751015	180219003	696257	125	165696											
ELOVL2	54898	broad.mit.edu	37	chr6	11005676	11005676	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggatacccctgagagaaaGagcaggtctgttcttcatat	11	8	3	3	rs35925595	byFrequency	TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11005676	A	A	11005676	3	1	213	1	0	0	0	0	1	0	0	0	5116	942	33	4	730	4	ELOVL2	6	11005676	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08		11005676	160109391	126	165697											
HIST1H2AJ	8331	broad.mit.edu	37	chr6	27782693	27782693	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctattttgattgggcaaaaCtggcatctgacgtcatccac	8	11	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27782693	G	G	27782693	1	3	213	0	1	0	0	0	0	0	0	0	7203	580	20	4		4	HIST1H2AJ	6	27782693	5'Flank	SNP	C	TCGA-75-5125-01A-01D-1753-08	16777017	27782693	143332374	127	165698											
GABBR1	2550	broad.mit.edu	37	chr6	29588851	29588851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctccaccctcccaggtgCcagactgcaagtccccacac	6	21	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29588851	A	A	29588851	1	1	213	0	1	0	0	0	0	0	0	0	6215	754	26	3		3	GABBR1	6	29588851	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1806158	29588851	141526216	128	165699											
RDBP	7936	broad.mit.edu	37	chr6	31923085	31923085	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggtcctggagtggtgagaGacctacctcagtgtggagca	17	8	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31923085	T	T	31923085	1	4	213	0	1	0	0	0	0	0	0	0	13296	957	33	3		3	RDBP	6	31923085	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	2334234	31923085	139191982	129	165700											
HLA-DOA	3111	broad.mit.edu	37	chr6	32975458	32975458	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacgttccccctttgtaGccatctgtgggcaggggatg	15	10	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32975458	T	T	32975458	1	4	213	0	1	0	0	0	0	0	0	0	7267	986	34	3		3	HLA-DOA	6	32975458	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1052373	32975458	138139609	130	165701											
UBR2	23304	broad.mit.edu	37	chr6	42626404	42626404	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcaagggacaaagacaaAgctgagaggaagagaaaagc	13	5	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42626404	C	C	42626404	3	2	213	1	0	0	0	0	1	0	0	0	17028	69	3	5	3344	5	UBR2	6	42626404	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	9650946	42626404	128488663	131	165702											
KIAA0240	23506	broad.mit.edu	37	chr6	42796189	42796189	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatttttatgcatccttttcAaaggttacatatgccatgta	5	7	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42796189	G	G	42796189	1	3	213	0	1	0	0	0	0	0	0	0	8234	145	5	5		5	KIAA0240	6	42796189	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	169785	42796189	128318878	132	165703											
KHDRBS2	202559	broad.mit.edu	37	chr6	62995866	62995866	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttccatagcgcggacttcGgattgtccccgggcgaagcg	13	13	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62995866	C	C	62995866	1	2	213	0	1	0	0	0	0	0	0	0	8217	1131	39	4		4	KHDRBS2	6	62995866	5'UTR	SNP	G	TCGA-75-5125-01A-01D-1753-08	20199677	62995866	108119201	133	165704											
BAI3	577	broad.mit.edu	37	chr6	69949010	69949010	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtaacttttctctctctGgctaggtacatacgctctga	9	10	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69949010	A	A	69949010	1	1	213	0	1	0	0	0	0	0	0	0	1305	1363	47	4		4	BAI3	6	69949010	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	6953144	69949010	101166057	134	165705											
LMBRD1	55788	broad.mit.edu	37	chr6	70462252	70462252	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tataacagaatataaagctgTggaaataaataataaaccga	6	4	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70462252	C	C	70462252	1	2	213	0	1	0	0	0	0	0	0	0	8916	1711	59	5		5	LMBRD1	6	70462252	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	513242	70462252	100652815	135	165706											
COL12A1	1303	broad.mit.edu	37	chr6	75865597	75865597	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agacaaaaagatttttaaaaTattatctgtaagactaggct	6	4	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75865597	A	A	75865597	1	1	213	0	1	0	0	0	0	0	0	0	3701	1421	49	5		5	COL12A1	6	75865597	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	5403345	75865597	95249470	136	165707											
RTN4IP1	84816	broad.mit.edu	37	chr6	107066958	107066958	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaaattgttttcaaatgtTagtacagctctgttcgtgta	9	5	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107066958	C	C	107066958	1	2	213	0	1	0	0	0	0	0	0	0	13840	1769	61	5		5	RTN4IP1	6	107066958	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	31201361	107066958	64048109	137	165708											
SEC63	11231	broad.mit.edu	37	chr6	108233863	108233863	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtattaccaagacagattgTacataacaaaaattttgtct	5	6	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108233863	C	C	108233863	1	2	213	0	1	0	0	0	0	0	0	0	14118	1653	57	5		5	SEC63	6	108233863	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	1166905	108233863	62881204	138	165709											
AKD1	221264	broad.mit.edu	37	chr6	109854401	109854401	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagatcactttataatagatCactaaacagatgctgaacag	6	7	2	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109854401	A	A	109854401	1	1	213	0	1	0	0	0	0	0	0	0	460	841	29	3		3	AKD1	6	109854401	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1620538	109854401	61260666	139	165710											
MAN1A1	4121	broad.mit.edu	37	chr6	119611954	119611954	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaaaaaaaaattcaaacatGatgatagtacacaattcaga	5	5	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119611954	A	A	119611954	1	1	213	0	1	0	0	0	0	0	0	0	9302	1305	45	4		4	MAN1A1	6	119611954	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	9757553	119611954	51503113	140	165711											
MAN1A1	4121	broad.mit.edu	37	chr6	119670168	119670168	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaccgccgccgccgagCcccccgcccaggacgccgcc	11	25	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119670168	A	A	119670168	2	1	213	1	0	0	0	0	0	0	0	1	9302	726	26	3		3	MAN1A1	6	119670168	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	58214	119670168	51444899	141	165712											
ENPP1	5167	broad.mit.edu	37	chr6	132203498	132203498	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaggacagtttctctaCggaagacttctccaactgtc	7	12	4	1	rs138032713		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132203498	T	T	132203498	3	4	213	1	0	0	0	0	1	0	0	0	5171	536	19	4	2196	4	ENPP1	6	132203498	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	12533330	132203498	38911569	142	165713											
EYA4	2070	broad.mit.edu	37	chr6	133833720	133833720	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcccaacagaagaaaacaAgagtgaggcaatgagatgga	11	6	0	5			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133833720	G	G	133833720	1	3	213	0	1	0	0	0	0	0	0	0	5374	87	3	5		5	EYA4	6	133833720	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	1630222	133833720	37281347	143	165714											
SGK1	6446	broad.mit.edu	37	chr6	134638415	134638415	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttaccactgccatcagaaGcacggcttacattaagggtt	8	11	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134638415	A	A	134638415	1	1	213	0	1	0	0	0	0	0	0	0	14320	986	34	4		4	SGK1	6	134638415	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	804695	134638415	36476652	144	165715											
SYNE1	23345	broad.mit.edu	37	chr6	152712519	152712519	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaccacatgctttgcaGtgcttcctccagggcttcgt	9	14	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152712519	T	T	152712519	3	4	213	1	0	0	0	0	1	0	0	0	15564	1020	36	3	18949	3	SYNE1	6	152712519	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	18074104	152712519	18402548	145	165716											
OPRM1	4988	broad.mit.edu	37	chr6	154412465	154412465	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagtcctttatgcatttcTggatgaaaacttcaaacgat	6	10	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154412465	A	A	154412465	3	1	213	1	0	0	0	0	1	0	0	0	10981	1580	55	5	1366	5	OPRM1	6	154412465	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	1699946	154412465	16702602	146	165717											
IPCEF1	26034	broad.mit.edu	37	chr6	154586909	154586909	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaccgtttaaatctagcaAcagtgtctttggttctactg	8	8	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154586909	G	G	154586909	1	3	213	0	1	0	0	0	0	0	0	0	7861	58	2	5		5	IPCEF1	6	154586909	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	174444	154586909	16528158	147	165718											
TAGAP	117289	broad.mit.edu	37	chr6	159457919	159457919	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgggaggatggcatgctgGgctctgagtatctcctatcg	14	10	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159457919	C	C	159457919	3	2	213	1	0	0	0	0	1	0	0	0	15656	1232	43	4	1063	4	TAGAP	6	159457919	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	4871010	159457919	11657148	148	165719											
WTAP	9589	broad.mit.edu	37	chr6	160176087	160176087	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacttcatcatccagcttgAtgaagaagtagagggtatgc	11	7	2	5			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	160176087	C	C	160176087	3	2	213	1	0	0	0	0	1	0	0	0	17536	333	12	5	665	5	WTAP	6	160176087	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	718168	160176087	10938980	149	165720											
ACAT2	39	broad.mit.edu	37	chr6	160197118	160197118	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttaatggcagagaacccacCattcccagcacacttacttc	5	14	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160197118	G	G	160197118	1	3	213	0	1	0	0	0	0	0	0	0	122	609	21	4		4	ACAT2	6	160197118	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	21031	160197118	10917949	150	165721											
IGF2R	3482	broad.mit.edu	37	chr6	160501157	160501157	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgataatgttcttcttctttCcagaaaccgatgacggcgtc	8	10	3	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160501157	T	T	160501157	1	4	213	0	1	0	0	0	0	0	0	0	7646	870	30	4		4	IGF2R	6	160501157	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	304039	160501157	10613910	151	165722											
PLG	5340	broad.mit.edu	37	chr6	161172987	161172987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacagaatcatatatgatGtttacactctgcagggtcag	8	8	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161172987	T	T	161172987	1	4	213	0	1	0	0	0	0	0	0	0	12181	1392	48	3		3	PLG	6	161172987	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	671830	161172987	9942080	152	165723											
MAP3K4	4216	broad.mit.edu	37	chr6	161508774	161508774	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttccagacactcttgctGaggagaagagtattattttg	10	6	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161508774	A	A	161508774	3	1	213	1	0	0	0	0	1	0	0	0	9344	1291	45	4	2649	4	MAP3K4	6	161508774	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	335787	161508774	9606293	153	165724											
USP42	84132	broad.mit.edu	37	chr7	6156330	6156330	+	Intron	DEL	C	-	-													tacagaaaaacttaaagaaaCcaaagaaaaatcacctagaa							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6156330	-	-	6156330	6	5	213	0	1	1	0	1	0	0	0	0	17200	522	18	0		0	USP42	7	6156330	Intron	DEL	C	TCGA-75-5125-01A-01D-1753-08		6156330	152982333	154	165725											
AHR	196	broad.mit.edu	37	chr7	17378833	17378833	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctggctgccatgatgCaacaagatgagtctatttat	8	11	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17378833	T	T	17378833	4	4	213	1	0	0	0	0	0	1	0	0	416	711	25	4	1422	4	AHR	7	17378833	Nonsense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	11222503	17378833	141759830	155	165726											
AHR	196	broad.mit.edu	37	chr7	17379714	17379714	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcatggattaaatccacaGtcagccataataactcctca	5	11	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17379714	C	C	17379714	3	2	213	1	0	0	0	0	1	0	0	0	416	1020	36	4	2303	4	AHR	7	17379714	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	881	17379714	141758949	156	165727											
ABCB5	340273	broad.mit.edu	37	chr7	20767914	20767914	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctataattcatgcctcattaTttggtaaattttgtacattc	4	7	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20767914	A	A	20767914	1	1	213	0	1	0	0	0	0	0	0	0	44	1508	52	5		5	ABCB5	7	20767914	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	3388200	20767914	138370749	157	165728											
DNAH11	8701	broad.mit.edu	37	chr7	21627830	21627830	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	catgaaacaggtaagtggtgGataaggttggacacatttac	12	5	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21627830	T	T	21627830	1	4	213	0	1	0	0	0	0	0	0	0	4639	1189	41	3		3	DNAH11	7	21627830	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	859916	21627830	137510833	158	165729											
LOC402644	402644	broad.mit.edu	37	chr7	28319114	28319114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccagtgccattatggtGcgtgaagtcaccaccctgac	10	14	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28319114	T	T	28319114	3	4	213	1	0	0	0	0	1	0	0	0	8961	1319	46	3	275	3	LOC402644	7	28319114	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	6691284	28319114	130819549	159	165730											
NEUROD6	63974	broad.mit.edu	37	chr7	31378583	31378584	+	Frame_Shift_Ins	INS	-	TTCGC	TTCGC													tcctgttcctctcgcgcgcgINSttcgcttcctgtctcctgaa							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTCGC	31378584	TTCGC	TTCGC	31378583	7	5	213	1	0	1	1	0	0	0	0	0	10446	1136	40	0	717	0	NEUROD6	7	31378583	Frame_Shift_Ins	INS	-	TCGA-75-5125-01A-01D-1753-08	3059469	31378583	127760080	160	165731											
POLM	27434	broad.mit.edu	37	chr7	44113229	44113229	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccccaacaatgtacctgctCcgggtcaaacagcccatggc	8	16	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44113229	T	T	44113229	3	4	213	1	0	0	0	0	1	0	0	0	12301	864	30	4	99	4	POLM	7	44113229	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	12734646	44113229	115025434	161	165732											
CCM2	83605	broad.mit.edu	37	chr7	45067252	45067252	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcatgtttttttcagagGgagggctaacatctggccat	11	8	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45067252	C	C	45067252	1	2	213	0	1	0	0	0	0	0	0	0	2938	1247	43	4		4	CCM2	7	45067252	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	954023	45067252	114071411	162	165733											
FIGNL1	63979	broad.mit.edu	37	chr7	50513042	50513042	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactaggtcgcacagttctAaaagcattttcaaaatcaat	5	9	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50513042	G	G	50513042	2	3	213	1	0	0	0	0	0	0	0	1	5949	359	13	5		5	FIGNL1	7	50513042	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	5445790	50513042	108625621	163	165734											
COBL	23242	broad.mit.edu	37	chr7	51287419	51287419	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgagtacagcgactcctcCtgcagcaccggctctcacct	9	16	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51287419	T	T	51287419	1	4	213	0	1	0	0	0	0	0	0	0	3685	696	24	4		4	COBL	7	51287419	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	774377	51287419	107851244	164	165735											
MDH2	4191	broad.mit.edu	37	chr7	75686766	75686766	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcctgactgcctgaaaGgttgtgatgtggtagttatt	13	6	0	3	rs145477708		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75686766	T	T	75686766	3	4	213	1	0	0	0	0	1	0	0	0	9503	1000	35	2	284	2	MDH2	7	75686766	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	24399347	75686766	83451897	165	165736											
HGF	3082	broad.mit.edu	37	chr7	81374496	81374496	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaatcaaaaacaccacTgttgcatttaaagaacagca	5	9	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81374496	A	A	81374496	1	1	213	0	1	0	0	0	0	0	0	0	7152	1595	55	5		5	HGF	7	81374496	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	5687730	81374496	77764167	166	165737											
PCLO	27445	broad.mit.edu	37	chr7	82580373	82580373	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagtgggaacagagtctatCgtctcagcagtaagagactc	11	8	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82580373	A	A	82580373	2	1	213	1	0	0	0	0	0	0	0	1	11677	871	31	3		3	PCLO	7	82580373	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	1205877	82580373	76558290	167	165738											
TRRAP	8295	broad.mit.edu	37	chr7	98543346	98543346	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aataacataaatagaaaaaaGatgattttcctccccatcct	3	9	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98543346	C	C	98543346	1	2	213	0	1	0	0	0	0	0	0	0	16726	957	33	4		4	TRRAP	7	98543346	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	15962973	98543346	60595317	168	165739											
RELN	5649	broad.mit.edu	37	chr7	103275985	103275985	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgatcaggggctctgcaCgtgctcagaacagatttgct	13	10	3	3	rs148510862	byFrequency	TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103275985	A	A	103275985	2	1	213	1	0	0	0	0	0	0	0	1	13328	523	19	3		3	RELN	7	103275985	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	4732639	103275985	55862678	169	165740											
COG5	10466	broad.mit.edu	37	chr7	106888996	106888996	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaagattaaagaaaaacAacccaaagaaatttgagatg	8	5	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106888996	C	C	106888996	1	2	213	0	1	0	0	0	0	0	0	0	3693	145	5	5		5	COG5	7	106888996	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	3613011	106888996	52249667	170	165741											
TFEC	22797	broad.mit.edu	37	chr7	115624414	115624414	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagagttgtgtgtgcatGctgcacaagaggcccaccac	12	12	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115624414	T	T	115624414	3	4	213	1	0	0	0	0	1	0	0	0	15925	1319	46	3	989	3	TFEC	7	115624414	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	8735418	115624414	43514249	171	165742											
ZNF282	8427	broad.mit.edu	37	chr7	148895816	148895816	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgggtcctgcggctgcCcccgggcagcaagggggagg	18	13	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148895816	A	A	148895816	3	1	213	1	0	0	0	0	1	0	0	0	17945	623	22	2	563	2	ZNF282	7	148895816	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	33271402	148895816	10242847	172	165743											
GIMAP6	474344	broad.mit.edu	37	chr7	150325424	150325425	+	Frame_Shift_Ins	INS	-	A	A													atcacctcaagctccttcccINSagcccactctcggctccgtc							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150325425	A	A	150325424	7	5	213	1	0	1	1	0	0	0	0	0	6447	594	21	0	620	0	GIMAP6	7	150325424	Frame_Shift_Ins	INS	-	TCGA-75-5125-01A-01D-1753-08	1429608	150325424	8813239	173	165744											
NUB1	51667	broad.mit.edu	37	chr7	151074177	151074177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacatggagacagaggccGtcaatgagatactggaagac	13	7	1	5			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151074177	A	A	151074177	3	1	213	1	0	0	0	0	1	0	0	0	10809	1145	40	4	1726	4	NUB1	7	151074177	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	748753	151074177	8064486	174	165745											
PRKAG2	51422	broad.mit.edu	37	chr7	151372617	151372617	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gggggggaagacgaggcataGatgcgattctctaaccgttc	15	8	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151372617	T	T	151372617	2	4	213	1	0	0	0	0	0	0	0	1	12607	932	33	3		3	PRKAG2	7	151372617	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	298440	151372617	7766046	175	165746											
CLU	1191	broad.mit.edu	37	chr8	27464027	27464027	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtctctgattccctggtCtcatttagggcatcctacag	8	11	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27464027	A	A	27464027	3	1	213	1	0	0	0	0	1	0	0	0	3600	912	32	3	1112	3	CLU	8	27464027	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08		27464027	118899995	176	165747											
ESCO2	157570	broad.mit.edu	37	chr8	27657269	27657269	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatctagatccagaaccttaGattcatagctttcccagaac	6	11	2	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27657269	C	C	27657269	1	2	213	0	1	0	0	0	0	0	0	0	5291	957	33	4		4	ESCO2	8	27657269	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	193242	27657269	118706753	177	165748											
DUSP4	1846	broad.mit.edu	37	chr8	29203101	29203101	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtaaggaaatcggctctcTggtttcagatgttctgattt	11	7	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29203101	C	C	29203101	1	2	213	0	1	0	0	0	0	0	0	0	4867	1595	55	5		5	DUSP4	8	29203101	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	1545832	29203101	117160921	178	165749											
ARMC1	55156	broad.mit.edu	37	chr8	66517564	66517566	+	In_Frame_Del	DEL	TGC	-	-													ttggttgatgctattgctgaTgccaaagcctaagccaagat							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	66517566	-	-	66517564	7	5	213	1	0	1	0	1	0	0	0	0	953	1451	51	0	265	0	ARMC1	8	66517564	In_Frame_Del	DEL	TGC	TCGA-75-5125-01A-01D-1753-08	37314463	66517564	79846458	179	165750											
TRAM1	23471	broad.mit.edu	37	chr8	71520431	71520431	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcttttcttgcgaatcgCcatggtggggccgccgcccg	15	13	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71520431	T	T	71520431	3	4	213	1	0	0	0	0	1	0	0	0	16575	739	26	4	1164	4	TRAM1	8	71520431	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	5002867	71520431	74843591	180	165751											
FABP12	646486	broad.mit.edu	37	chr8	82441712	82441712	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtgatttcctcaaactcTtctcccagcttaaaggagat	8	11	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82441712	G	G	82441712	3	3	213	1	0	0	0	0	1	0	0	0	5402	1606	56	5	225	5	FABP12	8	82441712	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	10921281	82441712	63922310	181	165752											
VPS13B	157680	broad.mit.edu	37	chr8	100514085	100514085	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcctgaaaataaaggcacAggtacaggattccttttctt	8	8	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100514085	G	G	100514085	2	3	213	1	0	0	0	0	0	0	0	1	17317	202	7	5		5	VPS13B	8	100514085	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	18072373	100514085	45849937	182	165753											
RIMS2	9699	broad.mit.edu	37	chr8	105261015	105261015	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctcagctagtgggacGccagactctggcaacacctg	11	15	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105261015	T	T	105261015	3	4	213	1	0	0	0	0	1	0	0	0	13479	1087	38	3	3841	3	RIMS2	8	105261015	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	4746930	105261015	41103007	183	165754											
CSMD3	114788	broad.mit.edu	37	chr8	113314099	113314099	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagagcccacaagcatgaatCccaagtcgcaggtaaagata	9	11	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113314099	T	T	113314099	3	4	213	1	0	0	0	0	1	0	0	0	3980	855	30	4	2836	4	CSMD3	8	113314099	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	8053084	113314099	33049923	184	165755											
DEPDC6	64798	broad.mit.edu	37	chr8	121019043	121019043	+	Splice_Site	DEL	G	-	-													gacattgtgtttgtctgccaGtgctgaagagacctgtcacc							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121019043	-	-	121019043	8	5	213	1	0	1	0	1	0	0	1	0	4483	1043	36	0	951	0	DEPDC6	8	121019043	Splice_Site	DEL	G	TCGA-75-5125-01A-01D-1753-08	7704944	121019043	25344979	185	165756											
MRPL13	28998	broad.mit.edu	37	chr8	121444218	121444218	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtaagaacaactgtattctTaaagtaatatattttaacta	4	4	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121444218	A	A	121444218	1	1	213	0	1	0	0	0	0	0	0	0	9872	1769	61	5		5	MRPL13	8	121444218	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	425175	121444218	24919804	186	165757											
DERL1	79139	broad.mit.edu	37	chr8	124031533	124031558	+	Splice_Site	DEL	CTCATTGATTACCCTGCAAAGAGAGC	-	-													ccaaccagatttccaataagCtcattgattaccctgcaaag					rs2272722	byFrequency;by1000genomes	TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124031558	-	-	124031533	8	5	213	1	0	1	0	1	0	0	1	0	4486	796	28	0	244	0	DERL1	8	124031533	Splice_Site	DEL	CTCATTGATTACCCTGCAAAGAGAGC	TCGA-75-5125-01A-01D-1753-08	2587315	124031533	22332489	187	165758											
GML	2765	broad.mit.edu	37	chr8	143921919	143921919	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccagtgccaccatgcgCgctcagtgtaagtatcattc	10	13	2	0	rs138131984	byFrequency;by1000genomes	TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143921919	A	A	143921919	2	1	213	1	0	0	0	0	0	0	0	1	6556	755	27	3		3	GML	8	143921919	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	19890386	143921919	2442103	188	165759											
SLC1A1	6505	broad.mit.edu	37	chr9	4564398	4564398	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccagaaagtgggtgaaaTtgcgaggacaggcagcaccc	13	11	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4564398	C	C	4564398	3	2	213	1	0	0	0	0	1	0	0	0	14544	1493	52	5	394	5	SLC1A1	9	4564398	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08		4564398	136649033	189	165760											
DENND4C	55667	broad.mit.edu	37	chr9	19346132	19346132	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtgaaatggctatcatgaTgggagcagatgccaagattc	12	6	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19346132	C	C	19346132	3	2	213	1	0	0	0	0	1	0	0	0	4475	1464	51	5	2580	5	DENND4C	9	19346132	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	14781734	19346132	121867299	190	165761											
MLLT3	4300	broad.mit.edu	37	chr9	20414405	20414405	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgctgctgctgctggtatGaatactcctattagggtcct	11	10	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20414405	A	A	20414405	3	1	213	1	0	0	0	0	1	0	0	0	9721	1290	45	4	1295	4	MLLT3	9	20414405	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	1068273	20414405	120799026	191	165762											
TMEM2	23670	broad.mit.edu	37	chr9	74324227	74324227	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacttagacacatttacaCagcttggatggcggatcagg	10	10	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74324227	A	A	74324227	3	1	213	1	0	0	0	0	1	0	0	0	16244	478	17	3	1250	3	TMEM2	9	74324227	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	53909822	74324227	66889204	192	165763											
SPTLC1	10558	broad.mit.edu	37	chr9	94800706	94800706	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcttgaagatcgctcaCggagaaataatgttagaagt	11	7	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94800706	T	T	94800706	1	4	213	0	1	0	0	0	0	0	0	0	15241	551	19	4		4	SPTLC1	9	94800706	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	20476479	94800706	46412725	193	165764											
TEX10	54881	broad.mit.edu	37	chr9	103102556	103102556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccttttatttggctctttCcttttgtgcttggttatttc	6	8	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103102556	A	A	103102556	3	1	213	1	0	0	0	0	1	0	0	0	15894	854	30	3	1600	3	TEX10	9	103102556	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	8301850	103102556	38110875	194	165765											
DBC1	1620	broad.mit.edu	37	chr9	121929698	121929698	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctgcacgtctgagatcttGatgtagaactgcctcttgga	10	10	3	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121929698	A	A	121929698	2	1	213	1	0	0	0	0	0	0	0	1	4280	1280	45	4		4	DBC1	9	121929698	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	18827142	121929698	19283733	195	165766											
COL5A1	1289	broad.mit.edu	37	chr9	137702058	137702058	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacagaaaaggtccaaacGgttgtcaagctttctaaccg	10	9	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137702058	A	A	137702058	1	1	213	0	1	0	0	0	0	0	0	0	3728	1131	39	4		4	COL5A1	9	137702058	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	15772360	137702058	3511373	196	165767											
WDR37	22884	broad.mit.edu	37	chr10	1126340	1126340	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtgtttgattgtcactctCtgtccctgcagccagtcaca	8	12	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1126340	G	G	1126340	1	3	213	0	1	0	0	0	0	0	0	0	17418	928	32	4		4	WDR37	10	1126340	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08		1126340	134408407	197	165768											
WDR37	22884	broad.mit.edu	37	chr10	1130582	1130582	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggaaccctagatgcaaaAgcgtcatggaggagtcagtg	14	7	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1130582	C	C	1130582	1	2	213	0	1	0	0	0	0	0	0	0	17418	87	3	5		5	WDR37	10	1130582	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	4242	1130582	134404165	198	165769											
AKR1C3	8644	broad.mit.edu	37	chr10	5149577	5149577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacattcatactaatgacaGcttcattgaaatcactttac	3	9	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5149577	T	T	5149577	1	4	213	0	1	0	0	0	0	0	0	0	471	986	34	3		3	AKR1C3	10	5149577	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	4018995	5149577	130385170	199	165770											
ITIH2	3698	broad.mit.edu	37	chr10	7751133	7751133	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcagatccccaaaggagCattcatttccaacttctcca	5	13	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7751133	T	T	7751133	3	4	213	1	0	0	0	0	1	0	0	0	7974	710	25	4	355	4	ITIH2	10	7751133	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	2601556	7751133	127783614	200	165771											
ITGA8	8516	broad.mit.edu	37	chr10	15702969	15702969	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaattactcacacacacaAacacacacacacacgccata	4	15	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15702969	C	C	15702969	1	2	213	0	1	0	0	0	0	0	0	0	7952	29	1	5		5	ITGA8	10	15702969	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	7951836	15702969	119831778	201	165772											
ITGA8	8516	broad.mit.edu	37	chr10	15714724	15714724	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaatttgcaatgatatctGcaacactggcagtgatcact	8	8	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15714724	C	C	15714724	3	2	213	1	0	0	0	0	1	0	0	0	7952	1319	46	4	2586	4	ITGA8	10	15714724	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11755	15714724	119820023	202	165773											
ZNF248	57209	broad.mit.edu	37	chr10	38121742	38121742	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctccaatagggattttctCatgcctaatatcaaggagca	7	10	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38121742	A	A	38121742	4	1	213	1	0	0	0	0	0	1	0	0	17919	835	29	3	1202	3	ZNF248	10	38121742	Nonsense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	22407018	38121742	97413005	203	165774											
CCDC6	8030	broad.mit.edu	37	chr10	61592164	61592164	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagaaatgaagtctccacAgtggggagagaaagctgaaa	12	5	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61592164	T	T	61592164	1	4	213	0	1	0	0	0	0	0	0	0	2858	203	7	5		5	CCDC6	10	61592164	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	23470422	61592164	73942583	204	165775											
ANKRD1	27063	broad.mit.edu	37	chr10	92680017	92680017	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagatcctcctgcttctctAaagtaacagcagcttcatac	5	13	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92680017	G	G	92680017	3	3	213	1	0	0	0	0	1	0	0	0	637	372	13	5	875	5	ANKRD1	10	92680017	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	31087853	92680017	42854730	205	165776											
CYP2C9	1559	broad.mit.edu	37	chr10	96745844	96745844	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacatgacaacaaagaatttCccaacccagagatgtttgac	6	10	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96745844	T	T	96745844	3	4	213	1	0	0	0	0	1	0	0	0	4201	855	30	4	1234	4	CYP2C9	10	96745844	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	4065827	96745844	38788903	206	165777											
POLL	27343	broad.mit.edu	37	chr10	103339273	103339273	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctgaagacatccttctcAgtgggagtgggcagcactcg	13	11	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103339273	G	G	103339273	2	3	213	1	0	0	0	0	0	0	0	1	12300	175	7	5		5	POLL	10	103339273	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	6593429	103339273	32195474	207	165778											
ADD3	120	broad.mit.edu	37	chr10	111872541	111872541	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgtgtattacaggcctttCgggaagacttggaatgcctt	11	7	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111872541	T	T	111872541	3	4	213	1	0	0	0	0	1	0	0	0	306	875	31	4	208	4	ADD3	10	111872541	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	8533268	111872541	23662206	208	165779											
PNLIP	5406	broad.mit.edu	37	chr10	118307817	118307817	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcccctctccatgtacaaaTggttctattggctactatag	7	11	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118307817	A	A	118307817	1	1	213	0	1	0	0	0	0	0	0	0	12244	1479	51	5		5	PNLIP	10	118307817	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	6435276	118307817	17226930	209	165780											
CPXM2	119587	broad.mit.edu	37	chr10	125530397	125530397	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttacatgagtaccaaagatGaaggggccaagcatcccaga	10	9	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530397	A	A	125530397	1	1	213	0	1	0	0	0	0	0	0	0	3870	1305	45	4		4	CPXM2	10	125530397	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	7222580	125530397	10004350	210	165781											
MUC5B	727897	broad.mit.edu	37	chr11	1268963	1268963	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgggcctcgagtgccGtgcccaggcccagcctggtg	15	17	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1268963	C	C	1268963	3	2	213	1	0	0	0	0	1	0	0	0	10073	1145	40	4	10984	4	MUC5B	11	1268963	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08		1268963	133737553	211	165782											
OR52E6	390078	broad.mit.edu	37	chr11	5862769	5862769	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatgtagcggtcaaaggccAtggccaccaatacgatgctc	10	12	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5862769	T	T	5862769	3	4	213	1	0	0	0	0	1	0	0	0	11211	217	8	5	584	5	OR52E6	11	5862769	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	4593806	5862769	129143747	212	165783											
OR52B2	255725	broad.mit.edu	37	chr11	6191452	6191452	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggactgcagtgatgtaaatGaggcaaagaggtattgacag	14	4	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6191452	A	A	6191452	2	1	213	1	0	0	0	0	0	0	0	1	11205	1277	45	4		4	OR52B2	11	6191452	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	328683	6191452	128815064	213	165784											
SBF2	81846	broad.mit.edu	37	chr11	9853988	9853988	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcagagacatagaatagaGaagagaatgattgggggaag	14	3	1	5			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9853988	C	C	9853988	1	2	213	0	1	0	0	0	0	0	0	0	13971	957	33	4		4	SBF2	11	9853988	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3662536	9853988	125152528	214	165785											
SLC17A6	57084	broad.mit.edu	37	chr11	22397983	22397983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacaaagtaattaagcacGtgttctgtacccagtatatt	6	8	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22397983	T	T	22397983	1	4	213	0	1	0	0	0	0	0	0	0	14534	1160	40	3		3	SLC17A6	11	22397983	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	12543995	22397983	112608533	215	165786											
MDK	4192	broad.mit.edu	37	chr11	46405098	46405098	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacatggggcctggcccacGccctccctctcccaggcccg	10	21	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46405098	T	T	46405098	1	4	213	0	1	0	0	0	0	0	0	0	9504	1102	38	3		3	MDK	11	46405098	3'UTR	SNP	G	TCGA-75-5125-01A-01D-1753-08	24007115	46405098	88601418	216	165787											
ARHGAP1	392	broad.mit.edu	37	chr11	46717452	46717452	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccatcctgccctcctggcGtctcccttcagcagaaggag	9	18	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46717452	A	A	46717452	1	1	213	0	1	0	0	0	0	0	0	0	863	1160	40	4		4	ARHGAP1	11	46717452	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	312354	46717452	88289064	217	165788											
FOLH1	2346	broad.mit.edu	37	chr11	49175538	49175538	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataatttctaatggcactgcTctatagttcaagaaaaggaa	7	6	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49175538	A	A	49175538	1	1	213	0	1	0	0	0	0	0	0	0	6037	1566	54	5		5	FOLH1	11	49175538	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	2458086	49175538	85830978	218	165789											
OR4C12	283093	broad.mit.edu	37	chr11	50003538	50003539	+	Missense_Mutation	DNP	CA	AG	AG													ggcctatgacattggggccaCagaagggcagccatactgta							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	50003539	AG	AG	50003538	3	1	213	1	0	0	0	0	1	0	0	0	11140	478	17	3	433	3	OR4C12	11	50003538	Missense_Mutation	DNP	CA	TCGA-75-5125-01A-01D-1753-08	828000	50003538	85002978	219	165790											
OR4C11	219429	broad.mit.edu	37	chr11	55371130	55371130	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagatgactacaattatgtgAgacgtgcaagcggagagagc	13	6	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55371130	T	T	55371130	2	4	213	1	0	0	0	0	0	0	0	1	11139	291	11	5		5	OR4C11	11	55371130	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	5367592	55371130	79635386	220	165791											
OR8J1	219477	broad.mit.edu	37	chr11	56125129	56125129	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctggcctgcaggcttctCaataggtttggcatggacaa	12	10	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56125129	T	T	56125129	1	4	213	0	1	0	0	0	0	0	0	0	11335	841	29	4		4	OR8J1	11	56125129	5'Flank	SNP	C	TCGA-75-5125-01A-01D-1753-08	753999	56125129	78881387	221	165792											
OR9G4	283189	broad.mit.edu	37	chr11	56510970	56510970	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacatccagccaaggaaatGcgcttatcttctgagacaca	7	13	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56510970	C	C	56510970	2	2	213	1	0	0	0	0	0	0	0	1	11345	1306	46	4		4	OR9G4	11	56510970	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	385841	56510970	78495546	222	165793											
MS4A4A	51338	broad.mit.edu	37	chr11	60073663	60073663	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgtaaagtgctctgttgtAcccctggtggggtgagtatt	14	6	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60073663	T	T	60073663	3	4	213	1	0	0	0	0	1	0	0	0	9956	391	14	5	659	5	MS4A4A	11	60073663	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	3562693	60073663	74932853	223	165794											
CPSF7	79869	broad.mit.edu	37	chr11	61196559	61196559	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggatagacgcgtgttcaagCctaggactggtacagcttga	13	9	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61196559	T	T	61196559	1	4	213	0	1	0	0	0	0	0	0	0	3862	754	26	4		4	CPSF7	11	61196559	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1122896	61196559	73809957	224	165795											
PLCB3	5331	broad.mit.edu	37	chr11	64021840	64021840	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccccaggggccaggcctgcAccacagccctcacttcctga	10	19	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64021840	T	T	64021840	1	4	213	0	1	0	0	0	0	0	0	0	12124	174	6	5		5	PLCB3	11	64021840	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	2825281	64021840	70984676	225	165796											
SF1	7536	broad.mit.edu	37	chr11	64536756	64536756	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccgaagctgcatcttccGtagatcattctggtcctctg	8	14	4	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64536756	A	A	64536756	3	1	213	1	0	0	0	0	1	0	0	0	14258	1144	40	4	1367	4	SF1	11	64536756	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	514916	64536756	70469760	226	165797											
B3GNT1	11041	broad.mit.edu	37	chr11	66113718	66113718	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcagctcgcaggcctgcagGaggaaagacaggttagcaaa	14	9	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66113718	A	A	66113718	1	1	213	0	1	0	0	0	0	0	0	0	1261	1189	41	4		4	B3GNT1	11	66113718	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1576962	66113718	68892798	227	165798											
ADRBK1	156	broad.mit.edu	37	chr11	67049199	67049200	+	Splice_Site	DNP	GG	CA	CA													tcatcctggacctcatgaacGgtgagtgctggccgggccct							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	67049200	CA	CA	67049199	5	2	213	1	0	0	0	0	0	0	1	0	343	1130	39	4	864	4	ADRBK1	11	67049199	Splice_Site	DNP	GG	TCGA-75-5125-01A-01D-1753-08	935481	67049199	67957317	228	165799											
DLG2	1740	broad.mit.edu	37	chr11	83195378	83195378	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagagagctgtagtgacGcaagtggataattctaaagt	12	6	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83195378	T	T	83195378	1	4	213	0	1	0	0	0	0	0	0	0	4595	1102	38	3		3	DLG2	11	83195378	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	16146179	83195378	51811138	229	165800											
CNTN5	53942	broad.mit.edu	37	chr11	99827747	99827747	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcgtaatgatggtaagTtgcttggcccgttaaaatgg	12	7	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99827747	A	A	99827747	1	1	213	0	1	0	0	0	0	0	0	0	3676	1740	60	5		5	CNTN5	11	99827747	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	16632369	99827747	35178769	230	165801											
NCAM1	4684	broad.mit.edu	37	chr11	113076267	113076267	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctcatgttcaagaatgcGccaaccccacaggagttccg	9	13	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113076267	A	A	113076267	2	1	213	1	0	0	0	0	0	0	0	1	10297	1074	38	4		4	NCAM1	11	113076267	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	13248520	113076267	21930249	231	165802											
CLDN25	644672	broad.mit.edu	37	chr11	113650996	113650996	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgacatcatacctcggtGggagtttggaggtgccctct	12	12	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113650996	T	T	113650996	3	4	213	1	0	0	0	0	1	0	0	0	3517	1357	47	2	481	2	CLDN25	11	113650996	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	574729	113650996	21355520	232	165803											
SIK3	23387	broad.mit.edu	37	chr11	116746211	116746211	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacgcatacctttaacactaGagagaaataatgagtctttc	6	9	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116746211	C	C	116746211	1	2	213	0	1	0	0	0	0	0	0	0	14432	957	33	4		4	SIK3	11	116746211	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3095215	116746211	18260305	233	165804											
HYOU1	10525	broad.mit.edu	37	chr11	118925362	118925362	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaagaagactggcacggtGatcactgcatccttgatggg	13	8	1	5			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118925362	C	C	118925362	3	2	213	1	0	0	0	0	1	0	0	0	7540	1280	45	4	2557	4	HYOU1	11	118925362	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	2179151	118925362	16081154	234	165805											
ABCG4	64137	broad.mit.edu	37	chr11	119031707	119031707	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catcctccgagcgctggatgTggaggatgccaagctctaca	12	12	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119031707	A	A	119031707	3	1	213	1	0	0	0	0	1	0	0	0	70	1696	59	5	1886	5	ABCG4	11	119031707	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	106345	119031707	15974809	235	165806											
GRIK4	2900	broad.mit.edu	37	chr11	120745794	120745794	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagaaatcttgcttgggGgcaagtgtaacctggggcct	15	7	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120745794	A	A	120745794	1	1	213	0	1	0	0	0	0	0	0	0	6842	1247	43	4		4	GRIK4	11	120745794	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1714087	120745794	14260722	236	165807											
TECTA	7007	broad.mit.edu	37	chr11	121038838	121038838	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acactggcaacatcatcaccAgggaccgcacgatcaatgtg	9	13	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	121038838	G	G	121038838	3	3	213	1	0	0	0	0	1	0	0	0	15869	179	7	5	5732	5	TECTA	11	121038838	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	293044	121038838	13967678	237	165808											
PKNOX2	63876	broad.mit.edu	37	chr11	125280832	125280832	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctagggcacctgtaatcgcTtcttatctgccaggcacttt	9	12	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	125280832	G	G	125280832	1	3	213	0	1	0	0	0	0	0	0	0	12078	1624	56	5		5	PKNOX2	11	125280832	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	4241994	125280832	9725684	238	165809											
ADAMTS15	170689	broad.mit.edu	37	chr11	130342847	130342847	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccatgccagaattcacCgaaagctaggtttactgagg	9	11	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130342847	T	T	130342847	1	4	213	0	1	0	0	0	0	0	0	0	260	667	23	4		4	ADAMTS15	11	130342847	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	5062015	130342847	4663669	239	165810											
NCAPD3	23310	broad.mit.edu	37	chr11	134022749	134022749	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcgctgcccaaggactgCgggaagtgatccagctgcct	13	12	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134022749	A	A	134022749	1	1	213	0	1	0	0	0	0	0	0	0	10301	783	27	3		3	NCAPD3	11	134022749	3'UTR	SNP	C	TCGA-75-5125-01A-01D-1753-08	3679902	134022749	983767	240	165811											
NCAPD3	23310	broad.mit.edu	37	chr11	134055515	134055515	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaagggtatcaacttctgcTgctccaggactcaagtggca	11	10	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134055515	A	A	134055515	1	1	213	0	1	0	0	0	0	0	0	0	10301	1595	55	5		5	NCAPD3	11	134055515	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	32766	134055515	951001	241	165812											
NCAPD3	23310	broad.mit.edu	37	chr11	134062726	134062726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccagggccttctcctgcaCagtgctctcgcagtccatca	8	17	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134062726	A	A	134062726	3	1	213	1	0	0	0	0	1	0	0	0	10301	478	17	3	2673	3	NCAPD3	11	134062726	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	7211	134062726	943790	242	165813											
IQSEC3	440073	broad.mit.edu	37	chr12	176639	176639	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgggcactgttgtggtggGagcaagggaagcaagtgggt	20	4	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176639	T	T	176639	1	4	213	0	1	0	0	0	0	0	0	0	7889	1189	41	3		3	IQSEC3	12	176639	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08		176639	133675256	243	165814											
ITFG2	55846	broad.mit.edu	37	chr12	2927408	2927408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcttcaagcagcacatccCtgccaacaccaaggtcatgc	7	15	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2927408	A	A	2927408	3	1	213	1	0	0	0	0	1	0	0	0	7940	681	24	2	385	2	ITFG2	12	2927408	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	2750769	2927408	130924487	244	165815											
TULP3	7289	broad.mit.edu	37	chr12	3047196	3047196	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggtttaccctttctgaaAtggagaaagtattctcctac	7	9	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3047196	C	C	3047196	1	2	213	0	1	0	0	0	0	0	0	0	16901	116	4	5		5	TULP3	12	3047196	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	119788	3047196	130804699	245	165816											
VWF	7450	broad.mit.edu	37	chr12	6131160	6131160	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcacacactggacagtcttCagggtcaacgcaggtctgca	10	13	5	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6131160	T	T	6131160	3	4	213	1	0	0	0	0	1	0	0	0	17373	835	29	4	4965	4	VWF	12	6131160	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3083964	6131160	127720735	246	165817											
CHD4	1108	broad.mit.edu	37	chr12	6690314	6690315	+	Missense_Mutation	DNP	GA	AG	AG													caacgaccttttcatcctctGaggcaggggcaggggcctgt							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	6690315	AG	AG	6690314	3	1	213	1	0	0	0	0	1	0	0	0	3358	1294	45	4	965	4	CHD4	12	6690314	Missense_Mutation	DNP	GA	TCGA-75-5125-01A-01D-1753-08	559154	6690314	127161581	247	165818											
PRB1	5542	broad.mit.edu	37	chr12	11508473	11508473	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcaaggccactgacagCagaatcaacagcatcttgca	9	13	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11508473	A	A	11508473	2	1	213	1	0	0	0	0	0	0	0	1	12548	697	25	3		3	PRB1	12	11508473	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	4818159	11508473	122343422	248	165819											
KIAA1467	57613	broad.mit.edu	37	chr12	13211352	13211352	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggtttgtggtaacttgctCaggacctttttggtttttta	10	6	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13211352	T	T	13211352	1	4	213	0	1	0	0	0	0	0	0	0	8305	841	29	4		4	KIAA1467	12	13211352	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1702879	13211352	120640543	249	165820											
ATF7IP	55729	broad.mit.edu	37	chr12	14614095	14614095	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	accatgtaggtttaatactaGaaatgcaagcatcttaatag	7	6	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14614095	C	C	14614095	1	2	213	0	1	0	0	0	0	0	0	0	1091	957	33	4		4	ATF7IP	12	14614095	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1402743	14614095	119237800	250	165821											
RERGL	79785	broad.mit.edu	37	chr12	18237315	18237315	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttactacatgtgtaactcctGtggaataggaaggtgaattg	11	5	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18237315	C	C	18237315	1	2	213	0	1	0	0	0	0	0	0	0	13341	1392	48	4		4	RERGL	12	18237315	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3623220	18237315	115614580	251	165822											
PIK3C2G	5288	broad.mit.edu	37	chr12	18524165	18524165	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagggaatccatgctcacTgtaaaactgtttgggattgc	10	9	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18524165	A	A	18524165	2	1	213	1	0	0	0	0	0	0	0	1	12006	1567	55	5		5	PIK3C2G	12	18524165	Silent	SNP	T	TCGA-75-5125-01A-01D-1753-08	286850	18524165	115327730	252	165823											
PDE3A	5139	broad.mit.edu	37	chr12	20782725	20782725	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggaggaggccagcccggtGacctgagcaggcacgtggtt	18	10	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20782725	C	C	20782725	1	2	213	0	1	0	0	0	0	0	0	0	11731	1305	45	4		4	PDE3A	12	20782725	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	2258560	20782725	113069170	253	165824											
CMAS	55907	broad.mit.edu	37	chr12	22217943	22217943	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtattcttatatgcagtgccCctaggtcttactgaagttgc	9	9	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22217943	T	T	22217943	1	4	213	0	1	0	0	0	0	0	0	0	3607	638	22	4		4	CMAS	12	22217943	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1435218	22217943	111633952	254	165825											
KIAA0528	9847	broad.mit.edu	37	chr12	22697143	22697143	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caaacaaacgagtctgcgccGagcgcggggccggcgggaga	17	12	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22697143	A	A	22697143	1	1	213	0	1	0	0	0	0	0	0	0	8252	1073	37	4		4	KIAA0528	12	22697143	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	479200	22697143	111154752	255	165826											
OVCH1	341350	broad.mit.edu	37	chr12	29639351	29639351	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataaaacatttttaacaatgTgaagttaaaagaatatgaag	6	2	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29639351	A	A	29639351	1	1	213	0	1	0	0	0	0	0	0	0	11417	1711	59	5		5	OVCH1	12	29639351	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	6942208	29639351	104212544	256	165827											
TMTC1	83857	broad.mit.edu	37	chr12	29673649	29673649	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcttcagcttctttaaacCgctcctttaaaaagaaagaa	4	9	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29673649	T	T	29673649	3	4	213	1	0	0	0	0	1	0	0	0	16383	652	23	4	886	4	TMTC1	12	29673649	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	34298	29673649	104178246	257	165828											
RACGAP1	29127	broad.mit.edu	37	chr12	50388347	50388347	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgccatgtagaccaacagatGaagaccacatgcgaagaacc	9	12	0	5			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50388347	C	C	50388347	1	2	213	0	1	0	0	0	0	0	0	0	13085	1305	45	4		4	RACGAP1	12	50388347	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	20714698	50388347	83463548	258	165829											
SMARCD1	6602	broad.mit.edu	37	chr12	50488030	50488030	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattgaaagtgtagtttgaaGatttttgccagatctgtaca	9	4	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50488030	C	C	50488030	1	2	213	0	1	0	0	0	0	0	0	0	14891	957	33	4		4	SMARCD1	12	50488030	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	99683	50488030	83363865	259	165830											
HOXC11	3227	broad.mit.edu	37	chr12	54367216	54367216	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcagatctcctatccctactCggcccaagtgcccccggtcc	7	19	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54367216	G	G	54367216	3	3	213	1	0	0	0	0	1	0	0	0	7377	893	31	4	193	4	HOXC11	12	54367216	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3879186	54367216	79484679	260	165831											
NCKAP1L	3071	broad.mit.edu	37	chr12	54901766	54901766	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaggttgggaggtctaggtCtactcacaggatggggtggg	18	6	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54901766	G	G	54901766	1	3	213	0	1	0	0	0	0	0	0	0	10317	928	32	4		4	NCKAP1L	12	54901766	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	534550	54901766	78950129	261	165832											
GPR182	11318	broad.mit.edu	37	chr12	57389032	57389032	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggggcctggcccctcggaGggggtcaccgcagtgcctac	17	14	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57389032	A	A	57389032	2	1	213	1	0	0	0	0	0	0	0	1	6742	991	35	4		4	GPR182	12	57389032	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	2487266	57389032	76462863	262	165833											
GEFT	115557	broad.mit.edu	37	chr12	58009913	58009913	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatggcccatccccttttcCactgctagctcaaaatttga	5	15	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58009913	T	T	58009913	1	4	213	0	1	0	0	0	0	0	0	0	6392	609	21	4		4	GEFT	12	58009913	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	620881	58009913	75841982	263	165834											
B4GALNT1	2583	broad.mit.edu	37	chr12	58022666	58022666	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttggtggcaatcgtgactaGagcgctgatgttgtactggg	15	7	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58022666	A	A	58022666	2	1	213	1	0	0	0	0	0	0	0	1	1271	933	33	4		4	B4GALNT1	12	58022666	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	12753	58022666	75829229	264	165835											
SRGAP1	57522	broad.mit.edu	37	chr12	64472782	64472782	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtttctgaatgcttccaGcacagtcgttccacagaatc	8	11	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64472782	T	T	64472782	3	4	213	1	0	0	0	0	1	0	0	0	15263	962	34	3	1243	3	SRGAP1	12	64472782	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	6450116	64472782	69379113	265	165836											
LEMD3	23592	broad.mit.edu	37	chr12	65564184	65564184	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggacgacgacgacgtgGcctccagcagacaggtatta	13	10	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65564184	A	A	65564184	3	1	213	1	0	0	0	0	1	0	0	0	8793	1203	42	4	810	4	LEMD3	12	65564184	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	1091402	65564184	68287711	266	165837											
ZFC3H1	196441	broad.mit.edu	37	chr12	72036450	72036450	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatcaaaaatcatggtgattCagttagatgtgcctatcaca	7	7	4	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72036450	T	T	72036450	1	4	213	0	1	0	0	0	0	0	0	0	17759	841	29	4		4	ZFC3H1	12	72036450	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	6472266	72036450	61815445	267	165838											
MYF5	4617	broad.mit.edu	37	chr12	81110975	81110975	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttcggagcgcacaaagcaGagctgcagggctcagatgag	14	11	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81110975	T	T	81110975	4	4	213	1	0	0	0	0	0	1	0	0	10121	943	33	3	135	3	MYF5	12	81110975	Nonsense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	9074525	81110975	52740920	268	165839											
FGD6	55785	broad.mit.edu	37	chr12	95483490	95483490	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatctagaacaaatcaggcaTgcttatgtaggcaatgctca	9	8	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95483490	A	A	95483490	1	1	213	0	1	0	0	0	0	0	0	0	5894	1479	51	5		5	FGD6	12	95483490	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	14372515	95483490	38368405	269	165840											
STAB2	55576	broad.mit.edu	37	chr12	104157100	104157100	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggtaagatgtcactgagctGaatctaaaggttggtaaatt	11	5	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104157100	C	C	104157100	1	2	213	0	1	0	0	0	0	0	0	0	15356	1305	45	4		4	STAB2	12	104157100	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	8673610	104157100	29694795	270	165841											
ACACB	32	broad.mit.edu	37	chr12	109678885	109678885	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctgtgttttggggcagatCgaggagtccgtgcgctacat	15	8	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109678885	T	T	109678885	2	4	213	1	0	0	0	0	0	0	0	1	107	874	31	4		4	ACACB	12	109678885	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	5521785	109678885	24173010	271	165842											
MYO1H	283446	broad.mit.edu	37	chr12	109874366	109874366	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaaagacaagcaggtaaGaattaaatagaaacaaataa	6	3	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109874366	A	A	109874366	1	1	213	0	1	0	0	0	0	0	0	0	10169	957	33	4		4	MYO1H	12	109874366	5'Flank	SNP	G	TCGA-75-5125-01A-01D-1753-08	195481	109874366	23977529	272	165843											
CUX2	23316	broad.mit.edu	37	chr12	111655815	111655815	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctatcccacctagagttgcCcaggggggccagcagcctcc	11	17	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111655815	A	A	111655815	1	1	213	0	1	0	0	0	0	0	0	0	4098	638	22	2		2	CUX2	12	111655815	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1781449	111655815	22196080	273	165844											
RPL6	6128	broad.mit.edu	37	chr12	112843030	112843034	+	Frame_Shift_Del	DEL	AGAAC	-	-													attaggttcttaagacatttAgaacaccaatttgtgaggat							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112843034	-	-	112843030	7	5	213	1	0	1	0	1	0	0	0	0	13709	433	15	0	5	0	RPL6	12	112843030	Frame_Shift_Del	DEL	AGAAC	TCGA-75-5125-01A-01D-1753-08	1187215	112843030	21008865	274	165845											
DDX54	79039	broad.mit.edu	37	chr12	113599212	113599212	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacctcgttaaggaagctGcgtgaagcccctgggatggg	15	9	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113599212	A	A	113599212	1	1	213	0	1	0	0	0	0	0	0	0	4405	1334	46	4		4	DDX54	12	113599212	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	756182	113599212	20252683	275	165846											
RFC5	5985	broad.mit.edu	37	chr12	118458670	118458670	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaactcacagatagcacaGcaacatggtttttgttttgt	8	7	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118458670	A	A	118458670	1	1	213	0	1	0	0	0	0	0	0	0	13356	986	34	4		4	RFC5	12	118458670	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	4859458	118458670	15393225	276	165847											
CIT	11113	broad.mit.edu	37	chr12	120142201	120142201	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttgctgaggttttcgttGtagcggagaatgacgacttt	12	5	0	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120142201	A	A	120142201	2	1	213	1	0	0	0	0	0	0	0	1	3469	1372	48	4		4	CIT	12	120142201	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	1683531	120142201	13709694	277	165848											
DNAH10	196385	broad.mit.edu	37	chr12	124383375	124383375	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtaggtgagtgagggcgGggccagggcagcccatcccc	18	12	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124383375	T	T	124383375	1	4	213	0	1	0	0	0	0	0	0	0	4638	1247	43	2		2	DNAH10	12	124383375	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	4241174	124383375	9468520	278	165849											
EP400	57634	broad.mit.edu	37	chr12	132471165	132471165	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtgagtggctccggcccagGaccctcccctgctcgatcct	11	17	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132471165	C	C	132471165	3	2	213	1	0	0	0	0	1	0	0	0	5191	1174	41	4	2051	4	EP400	12	132471165	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	8087790	132471165	1380730	279	165850											
ANKLE2	23141	broad.mit.edu	37	chr12	133324804	133324804	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagaaaaggtgtcctcctCtcccttctccacagctttcc	6	16	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133324804	T	T	133324804	3	4	213	1	0	0	0	0	1	0	0	0	633	922	32	4	1895	4	ANKLE2	12	133324804	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	853639	133324804	527091	280	165851											
FRY	10129	broad.mit.edu	37	chr13	32793061	32793061	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcttggtctgattactaAaagggcctatagatattaag	9	5	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32793061	C	C	32793061	1	2	213	0	1	0	0	0	0	0	0	0	6123	29	1	5		5	FRY	13	32793061	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08		32793061	82376817	281	165852											
NBEA	26960	broad.mit.edu	37	chr13	35769993	35769993	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttctaacctagtttctttCattacagaaacacctgctgc	4	11	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35769993	A	A	35769993	1	1	213	0	1	0	0	0	0	0	0	0	10281	841	29	3		3	NBEA	13	35769993	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	2976932	35769993	79399885	282	165853											
ATP7B	540	broad.mit.edu	37	chr13	52549456	52549456	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatacacagaaagcaagcTaaaggcagcatctacaaaat	6	9	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52549456	A	A	52549456	1	1	213	0	1	0	0	0	0	0	0	0	1195	1537	53	5		5	ATP7B	13	52549456	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	16779463	52549456	62620422	283	165854											
NALCN	259232	broad.mit.edu	37	chr13	101756965	101756965	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatggttacgatgatcatGacccagtccaggtaagtgac	11	9	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101756965	T	T	101756965	2	4	213	1	0	0	0	0	0	0	0	1	10242	1277	45	3		3	NALCN	13	101756965	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	49207509	101756965	13412913	284	165855											
OR4K13	390433	broad.mit.edu	37	chr14	20502352	20502352	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaggatgtaggtgtccttgCaggcaagtttaatcacaagg	13	6	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20502352	T	T	20502352	3	4	213	1	0	0	0	0	1	0	0	0	11162	710	25	4	350	4	OR4K13	14	20502352	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08		20502352	86847188	285	165856											
PSMB11	122706	broad.mit.edu	37	chr14	23511887	23511887	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtggccactgccctctgCggctgggaccgctctggccc	14	16	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23511887	A	A	23511887	4	1	213	1	0	0	0	0	0	1	0	0	12782	776	27	3	455	3	PSMB11	14	23511887	Nonsense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	3009535	23511887	83837653	286	165857											
FANCM	57697	broad.mit.edu	37	chr14	45653004	45653004	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatcatctagtgatgagagtGagaattttcccaaaccatgt	8	7	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45653004	C	C	45653004	3	2	213	1	0	0	0	0	1	0	0	0	5728	1291	45	4	4480	4	FANCM	14	45653004	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	22141117	45653004	61696536	287	165858											
MDGA2	161357	broad.mit.edu	37	chr14	47504065	47504065	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtatcattaatgtagaaTgtagaaatagttcattcaat	7	3	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47504065	A	A	47504065	1	1	213	0	1	0	0	0	0	0	0	0	9500	1479	51	5		5	MDGA2	14	47504065	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	1851061	47504065	59845475	288	165859											
C14orf101	54916	broad.mit.edu	37	chr14	57076058	57076058	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtggcaaaacttcagtgctCtgcctgggccttgattaaaa	10	9	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57076058	A	A	57076058	1	1	213	0	1	0	0	0	0	0	0	0	1747	928	32	3		3	C14orf101	14	57076058	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	9571993	57076058	50273482	289	165860											
SPTB	6710	broad.mit.edu	37	chr14	65240238	65240238	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgccaaccacagccccctgGcagggataggtagggagtga	14	11	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65240238	C	C	65240238	1	2	213	0	1	0	0	0	0	0	0	0	15236	1218	42	4		4	SPTB	14	65240238	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	8164180	65240238	42109302	290	165861											
ACOT2	10965	broad.mit.edu	37	chr14	74035914	74035914	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacagctctgccctagtgGgcgcttagcctgcgacggca	13	14	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74035914	A	A	74035914	1	1	213	0	1	0	0	0	0	0	0	0	152	1247	43	4		4	ACOT2	14	74035914	5'UTR	SNP	G	TCGA-75-5125-01A-01D-1753-08	8795676	74035914	33313626	291	165862											
FAM164C	79696	broad.mit.edu	37	chr14	75537608	75537608	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatggtttgttttactcgtCaggccctcaatcctggtatc	8	10	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75537608	G	G	75537608	4	3	213	1	0	0	0	0	0	1	0	0	5524	838	29	4	334	4	FAM164C	14	75537608	Nonsense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	1501694	75537608	31811932	292	165863											
FAM164C	79696	broad.mit.edu	37	chr14	75538401	75538401	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtccatggcaccagaCtcctcaggttccagcggctc	10	16	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75538401	T	T	75538401	1	4	213	0	1	0	0	0	0	0	0	0	5524	564	20	4		4	FAM164C	14	75538401	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	793	75538401	31811139	293	165864											
FLRT2	23768	broad.mit.edu	37	chr14	86088908	86088908	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caagtccgggggatggccgtCagggaattaaatatgaatct	13	7	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86088908	G	G	86088908	2	3	213	1	0	0	0	0	0	0	0	1	5997	813	29	4		4	FLRT2	14	86088908	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	10550507	86088908	21260632	294	165865											
AHNAK2	113146	broad.mit.edu	37	chr14	105410668	105410668	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgggcacctggccctccGggagcttcacatccatctgg	11	17	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105410668	A	A	105410668	3	1	213	1	0	0	0	0	1	0	0	0	415	1116	39	4	6271	4	AHNAK2	14	105410668	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	19321760	105410668	1938872	295	165866											
OR4M2	390538	broad.mit.edu	37	chr15	22369229	22369229	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgctctgttaatgtcctaTgccttccttctggccttgtt	7	11	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22369229	C	C	22369229	2	2	213	1	0	0	0	0	0	0	0	1	11170	1471	51	5		5	OR4M2	15	22369229	Silent	SNP	T	TCGA-75-5125-01A-01D-1753-08		22369229	80162163	296	165867											
GABRB3	2562	broad.mit.edu	37	chr15	26805962	26805962	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctatatcacaagtacaagAagggtgtgtggcttgacata	12	6	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26805962	T	T	26805962	1	4	213	0	1	0	0	0	0	0	0	0	6228	261	9	5		5	GABRB3	15	26805962	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	4436733	26805962	75725430	297	165868											
HERC2	8924	broad.mit.edu	37	chr15	28377245	28377245	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggaaagaatgggaaataCcttcataggcactttacagc	10	8	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28377245	T	T	28377245	5	4	213	1	0	0	0	0	0	0	1	0	7125	521	18	4	1985	4	HERC2	15	28377245	Splice_Site	SNP	C	TCGA-75-5125-01A-01D-1753-08	1571283	28377245	74154147	298	165869											
TRPM1	4308	broad.mit.edu	37	chr15	31357227	31357228	+	Intron	DNP	CC	AA	AA													ttcttggcttaggctggagtCctcgaagctccgtgctgtgg							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	31357228	AA	AA	31357227	1	1	213	0	1	0	0	0	0	0	0	0	16710	870	30	3		3	TRPM1	15	31357227	Intron	DNP	CC	TCGA-75-5125-01A-01D-1753-08	2979982	31357227	71174165	299	165870											
ATPBD4	89978	broad.mit.edu	37	chr15	35747012	35747012	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactgatatcccctctacttCttctttttcctgaaaataaa	2	11	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35747012	T	T	35747012	3	4	213	1	0	0	0	0	1	0	0	0	1206	922	32	4	505	4	ATPBD4	15	35747012	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	4389785	35747012	66784380	300	165871											
CASC5	57082	broad.mit.edu	37	chr15	40949363	40949363	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acccaaggtaaagcccgattGaagtatttaaaggaaaattt	8	6	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40949363	T	T	40949363	1	4	213	0	1	0	0	0	0	0	0	0	2689	1305	45	3		3	CASC5	15	40949363	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	5202351	40949363	61582029	301	165872											
CAPN3	825	broad.mit.edu	37	chr15	42679891	42679891	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctgaggaatgtggaggaAggacacatttcctaacagta	11	9	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42679891	C	C	42679891	1	2	213	0	1	0	0	0	0	0	0	0	2654	87	3	5		5	CAPN3	15	42679891	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	1730528	42679891	59851501	302	165873											
SPG11	80208	broad.mit.edu	37	chr15	44881427	44881427	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctaacttcttaatagcaaCttaactgtaaggattgtctt	6	7	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44881427	T	T	44881427	1	4	213	0	1	0	0	0	0	0	0	0	15159	580	20	4		4	SPG11	15	44881427	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	2201536	44881427	57649965	303	165874											
SEMA6D	80031	broad.mit.edu	37	chr15	48058843	48058843	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatgaacaagacacagaattCggcaacacagctcatctagg	8	10	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48058843	T	T	48058843	2	4	213	1	0	0	0	0	0	0	0	1	14155	883	31	4		4	SEMA6D	15	48058843	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	3177416	48058843	54472549	304	165875											
ATP8B4	79895	broad.mit.edu	37	chr15	50209300	50209300	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacctaagtccatttttaatGaaagttttgagggcttagct	8	6	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50209300	A	A	50209300	1	1	213	0	1	0	0	0	0	0	0	0	1201	1305	45	4		4	ATP8B4	15	50209300	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	2150457	50209300	52322092	305	165876											
LACTB	114294	broad.mit.edu	37	chr15	63433834	63433834	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atactggaggggcagtgggtGccagtagtgtcctgctggtc	17	8	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63433834	C	C	63433834	3	2	213	1	0	0	0	0	1	0	0	0	8669	1319	46	4	1500	4	LACTB	15	63433834	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	13224534	63433834	39097558	306	165877											
MTFMT	123263	broad.mit.edu	37	chr15	65308840	65308840	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcctcccattttatacaActggtaccagcagaaatctt	5	11	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65308840	G	G	65308840	2	3	213	1	0	0	0	0	0	0	0	1	10018	40	2	5		5	MTFMT	15	65308840	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	1875006	65308840	37222552	307	165878											
IGDCC4	57722	broad.mit.edu	37	chr15	65678089	65678089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggaggtagagccatgCtcgcatagccacgcgttgtg	15	9	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65678089	A	A	65678089	1	1	213	0	1	0	0	0	0	0	0	0	7639	812	28	3		3	IGDCC4	15	65678089	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	369249	65678089	36853303	308	165879											
NTRK3	4916	broad.mit.edu	37	chr15	88423518	88423518	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctccgtgtttgagagttGgaaccatggctgctttccat	10	10	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88423518	T	T	88423518	3	4	213	1	0	0	0	0	1	0	0	0	10803	1357	47	2	210	2	NTRK3	15	88423518	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	22745429	88423518	14107874	309	165880											
SLCO3A1	28232	broad.mit.edu	37	chr15	92671492	92671492	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggtaccacgcgactcaTcacaacagaggcaaaaggct	11	12	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92671492	C	C	92671492	1	2	213	0	1	0	0	0	0	0	0	0	14842	1450	50	5		5	SLCO3A1	15	92671492	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	4247974	92671492	9859900	310	165881											
MCTP2	55784	broad.mit.edu	37	chr15	94983439	94983439	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctggaattttgaactatAtatgatccccttggcattgt	8	7	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94983439	G	G	94983439	3	3	213	1	0	0	0	0	1	0	0	0	9494	449	16	5	2262	5	MCTP2	15	94983439	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	2311947	94983439	7547953	311	165882											
LUC7L	55692	broad.mit.edu	37	chr16	240028	240028	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggctgtggctccgggaacGgctgcggtggcgccgatgtc	18	13	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240028	A	A	240028	3	1	213	1	0	0	0	0	1	0	0	0	9169	1116	39	4	214	4	LUC7L	16	240028	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08		240028	90114725	312	165883											
MMP25	64386	broad.mit.edu	37	chr16	3108181	3108181	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacccctttgtcccctgcaGgcccctggttctggcgcctc	10	18	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3108181	A	A	3108181	5	1	213	1	0	0	0	0	0	0	1	0	9756	1014	35	4	1036	4	MMP25	16	3108181	Splice_Site	SNP	G	TCGA-75-5125-01A-01D-1753-08	2868153	3108181	87246572	313	165884											
TRAP1	10131	broad.mit.edu	37	chr16	3740882	3740882	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caggggttcctccttgtcctCggcggtctgcgtgctgaaca	13	13	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3740882	T	T	3740882	3	4	213	1	0	0	0	0	1	0	0	0	16579	893	31	4	1989	4	TRAP1	16	3740882	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	632701	3740882	86613871	314	165885											
DNAJA3	9093	broad.mit.edu	37	chr16	4484601	4484602	+	Intron	DEL	TG	-	-													atcctgatcagtacagcgtaTgtgcccatatgaataggtct							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4484602	-	-	4484601	6	5	213	0	1	1	0	1	0	0	0	0	4653	1479	51	0		0	DNAJA3	16	4484601	Intron	DEL	TG	TCGA-75-5125-01A-01D-1753-08	743719	4484601	85870152	315	165886											
SMG1	23049	broad.mit.edu	37	chr16	18846503	18846503	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatctataaaaataaggaaGaggtgcttgtttataacaca	7	4	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18846503	C	C	18846503	1	2	213	0	1	0	0	0	0	0	0	0	14909	957	33	4		4	SMG1	16	18846503	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	14361902	18846503	71508250	316	165887											
ACSM5	54988	broad.mit.edu	37	chr16	20448451	20448451	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagctcgcatggacaaggaTggctacttttggttcatggg	14	8	1	0	rs147520476	byFrequency;by1000genomes	TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20448451	A	A	20448451	3	1	213	1	0	0	0	0	1	0	0	0	187	1461	51	5	1424	5	ACSM5	16	20448451	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	1601948	20448451	69906302	317	165888											
TNRC6A	27327	broad.mit.edu	37	chr16	24800742	24800742	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tatggatgctgattctgcctCcagttctgaatcagagagaa	10	8	3	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24800742	G	G	24800742	3	3	213	1	0	0	0	0	1	0	0	0	16463	855	30	4	801	4	TNRC6A	16	24800742	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	4352291	24800742	65554011	318	165889											
TNRC6A	27327	broad.mit.edu	37	chr16	24828156	24828156	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatttcgtcctggtgagccAtggaaaggttatccaaacat	10	8	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24828156	G	G	24828156	2	3	213	1	0	0	0	0	0	0	0	1	16463	204	8	5		5	TNRC6A	16	24828156	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	27414	24828156	65526597	319	165890											
CDH13	1012	broad.mit.edu	37	chr16	83531764	83531764	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttcattatgttagagccCtgataggtgagaggagaggg	14	5	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83531764	A	A	83531764	1	1	213	0	1	0	0	0	0	0	0	0	3129	696	24	2		2	CDH13	16	83531764	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	58703608	83531764	6822989	320	165891											
TP53	7157	broad.mit.edu	37	chr17	7578542	7578542	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcaaaacatcttgttgaGggcaggggagtactgtagga	15	5	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578542	A	A	7578542	3	1	213	1	0	0	0	0	1	0	0	0	16505	1000	35	4	910	4	TP53	17	7578542	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08		7578542	73616668	321	165892											
FLII	2314	broad.mit.edu	37	chr17	18148758	18148758	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggcagcaggggagatacGgttgcatgggtgcctgggaa	21	6	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18148758	A	A	18148758	1	1	213	0	1	0	0	0	0	0	0	0	5982	1131	39	4		4	FLII	17	18148758	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	10570216	18148758	63046452	322	165893											
POLDIP2	26073	broad.mit.edu	37	chr17	26684622	26684622	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagcaacttccggtgcgCttagcgttacttccggcgcg	12	13	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26684622	A	A	26684622	1	1	213	0	1	0	0	0	0	0	0	0	12289	812	28	3		3	POLDIP2	17	26684622	5'Flank	SNP	C	TCGA-75-5125-01A-01D-1753-08	8535864	26684622	54510588	323	165894											
TMEM132E	124842	broad.mit.edu	37	chr17	32959769	32959769	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgagtggaaaagagtctcGagggtccatgaacgccaggg	16	7	1	3	rs139895222		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32959769	A	A	32959769	3	1	213	1	0	0	0	0	1	0	0	0	16171	1058	37	4	1285	4	TMEM132E	17	32959769	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	6275147	32959769	48235441	324	165895											
JUP	3728	broad.mit.edu	37	chr17	39913800	39913800	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtaggtggctgagcagagaGgaaaggaaaagccaggttaa	16	5	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39913800	C	C	39913800	1	2	213	0	1	0	0	0	0	0	0	0	8042	1015	35	4		4	JUP	17	39913800	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	6954031	39913800	41281410	325	165896											
STAT5B	6777	broad.mit.edu	37	chr17	40362175	40362175	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaactttggacataagaagGgaggggcactcacgagaatc	12	8	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40362175	A	A	40362175	1	1	213	0	1	0	0	0	0	0	0	0	15387	1247	43	4		4	STAT5B	17	40362175	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	448375	40362175	40833035	326	165897											
HDAC5	10014	broad.mit.edu	37	chr17	42165142	42165142	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacccagaacagtctatcCttccctccctcccttcttcc	2	19	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42165142	G	G	42165142	1	3	213	0	1	0	0	0	0	0	0	0	7077	696	24	4		4	HDAC5	17	42165142	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	1802967	42165142	39030068	327	165898											
C17orf53	78995	broad.mit.edu	37	chr17	42226180	42226180	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctagctctggattatttcctCggatacccttacaaccgcaa	6	13	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42226180	T	T	42226180	3	4	213	1	0	0	0	0	1	0	0	0	1878	875	31	4	1019	4	C17orf53	17	42226180	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	61038	42226180	38969030	328	165899											
MPO	4353	broad.mit.edu	37	chr17	56356421	56356421	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agctggtctcgcagttgacgCcagtgacgaaggaggcccgg	16	11	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56356421	G	G	56356421	3	3	213	1	0	0	0	0	1	0	0	0	9826	739	26	4	1432	4	MPO	17	56356421	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	14130241	56356421	24838789	329	165900											
TANC2	26115	broad.mit.edu	37	chr17	61428570	61428570	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtaagaactcatttatcCacttggtaattattaagtaa	5	7	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61428570	T	T	61428570	1	4	213	0	1	0	0	0	0	0	0	0	15664	609	21	4		4	TANC2	17	61428570	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	5072149	61428570	19766640	330	165901											
TACO1	51204	broad.mit.edu	37	chr17	61678784	61678784	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcagtgcccgcagcctcgCttgcctctcggaattgggcc	11	16	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61678784	T	T	61678784	1	4	213	0	1	0	0	0	0	0	0	0	15623	812	28	4		4	TACO1	17	61678784	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	250214	61678784	19516426	331	165902											
ERN1	2081	broad.mit.edu	37	chr17	62175962	62175962	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgggcatctcataagacgTtatgataaaaaagaatgcca	8	8	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62175962	A	A	62175962	1	1	213	0	1	0	0	0	0	0	0	0	5279	1740	60	5		5	ERN1	17	62175962	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	497178	62175962	19019248	332	165903											
ABCA9	10350	broad.mit.edu	37	chr17	66992178	66992178	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaatgcacagtatagCgtcattaaagtgtaccaatc	6	8	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66992178	T	T	66992178	1	4	213	0	1	0	0	0	0	0	0	0	39	783	27	4		4	ABCA9	17	66992178	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	4816216	66992178	14203032	333	165904											
P4HB	5034	broad.mit.edu	37	chr17	79803440	79803440	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctggagggaaggcgcaccgtCctgtcggcactggcaggaaa	16	11	0	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79803440	G	G	79803440	3	3	213	1	0	0	0	0	1	0	0	0	11453	854	30	4	182	4	P4HB	17	79803440	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	12811262	79803440	1391770	334	165905											
NDC80	10403	broad.mit.edu	37	chr18	2616504	2616504	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatgtcagaagatctctcGgaaaatattaaagagattag	9	5	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2616504	A	A	2616504	2	1	213	1	0	0	0	0	0	0	0	1	10337	1103	39	4		4	NDC80	18	2616504	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08		2616504	75460744	335	165906											
LPIN2	9663	broad.mit.edu	37	chr18	2922166	2922166	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcggccatgccgatggcacGagccgagcagtacagaaact	13	12	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2922166	T	T	2922166	3	4	213	1	0	0	0	0	1	0	0	0	9006	1058	37	3	500	3	LPIN2	18	2922166	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	305662	2922166	75155082	336	165907											
DLGAP1	9229	broad.mit.edu	37	chr18	3814285	3814285	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtggaacctattcagataGaaaacagataaatcactttt	6	6	2	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3814285	A	A	3814285	1	1	213	0	1	0	0	0	0	0	0	0	4599	957	33	4		4	DLGAP1	18	3814285	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	892119	3814285	74262963	337	165908											
SETBP1	26040	broad.mit.edu	37	chr18	42643042	42643042	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatctcttcccctcccgcAgtcggctcctccctgaagaa	6	18	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42643042	T	T	42643042	5	4	213	1	0	0	0	0	0	0	1	0	14242	202	7	5	4381	5	SETBP1	18	42643042	Splice_Site	SNP	A	TCGA-75-5125-01A-01D-1753-08	38828757	42643042	35434206	338	165909											
KDSR	2531	broad.mit.edu	37	chr18	61002580	61002580	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgagccaagggaactgttGaaatttccttgctaaaagag	10	7	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61002580	C	C	61002580	3	2	213	1	0	0	0	0	1	0	0	0	8210	1281	45	4	217	4	KDSR	18	61002580	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	18359538	61002580	17074668	339	165910											
ATCAY	85300	broad.mit.edu	37	chr19	3909446	3909446	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcctgaccctggaccccTccatgttgggtccctgcctt	10	16	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3909446	A	A	3909446	1	1	213	0	1	0	0	0	0	0	0	0	1081	1566	54	5		5	ATCAY	19	3909446	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08		3909446	55219537	340	165911											
SEMA6B	10501	broad.mit.edu	37	chr19	4557219	4557219	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggggggctccagctctaCgcggtagaggttgtccctgg	17	11	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4557219	T	T	4557219	3	4	213	1	0	0	0	0	1	0	0	0	14153	536	19	4	2460	4	SEMA6B	19	4557219	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	647773	4557219	54571764	341	165912											
XAB2	56949	broad.mit.edu	37	chr19	7687785	7687785	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatgacacgggcctgccGgggcgggcagaggcgaggct	20	11	0	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7687785	A	A	7687785	1	1	213	0	1	0	0	0	0	0	0	0	17545	1131	39	4		4	XAB2	19	7687785	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	3130566	7687785	51441198	342	165913											
MUC16	94025	broad.mit.edu	37	chr19	8971681	8971681	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccccaccttgtacctgtcAcatggatgtccaccaactgg	7	16	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8971681	T	T	8971681	3	4	213	1	0	0	0	0	1	0	0	0	10067	159	6	5	640	5	MUC16	19	8971681	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	1283896	8971681	50157302	343	165914											
ZNF431	170959	broad.mit.edu	37	chr19	21366070	21366071	+	Missense_Mutation	DNP	GG	TT	TT													cctacaaatgtgaagaatgtGgcaaagcttttaaccagtct							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21366071	TT	TT	21366070	3	4	213	1	0	0	0	0	1	0	0	0	18032	1348	47	2	982	2	ZNF431	19	21366070	Missense_Mutation	DNP	GG	TCGA-75-5125-01A-01D-1753-08	12394389	21366070	37762913	344	165915											
ZNF536	9745	broad.mit.edu	37	chr19	31048101	31048101	+	3'UTR	DEL	C	-	-													tcctagtcggtctatctggaCttgcccttgtctgttcgtgg							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31048101	-	-	31048101	6	5	213	0	1	1	0	1	0	0	0	0	18101	580	20	0		0	ZNF536	19	31048101	3'UTR	DEL	C	TCGA-75-5125-01A-01D-1753-08	9682031	31048101	28080882	345	165916											
MIA	8190	broad.mit.edu	37	chr19	41281418	41281418	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattggagaccccagcacccCcttgctcactctcttgctca	6	17	3	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41281418	T	T	41281418	1	4	213	0	1	0	0	0	0	0	0	0	9656	638	22	4		4	MIA	19	41281418	5'UTR	SNP	C	TCGA-75-5125-01A-01D-1753-08	10233317	41281418	17847565	346	165917											
PLAUR	5329	broad.mit.edu	37	chr19	44160780	44160780	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaacggcttcgggaatagGtgacagcccggcctgtttgg	16	9	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44160780	A	A	44160780	3	1	213	1	0	0	0	0	1	0	0	0	12118	1261	44	4	796	4	PLAUR	19	44160780	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	2879362	44160780	14968203	347	165918											
RRAS	6237	broad.mit.edu	37	chr19	50140165	50140165	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatggccccgaactcttccTggcccgcggtgtccaggact	11	16	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50140165	A	A	50140165	3	1	213	1	0	0	0	0	1	0	0	0	13787	1580	55	5	412	5	RRAS	19	50140165	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	5979385	50140165	8988818	348	165919											
CPT1C	126129	broad.mit.edu	37	chr19	50204776	50204776	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggagtcggtccggcccaTcctctccgacgaggacttcg	12	16	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50204776	A	A	50204776	3	1	213	1	0	0	0	0	1	0	0	0	3865	1435	50	5	596	5	CPT1C	19	50204776	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	64611	50204776	8924207	349	165920											
LIM2	3982	broad.mit.edu	37	chr19	51890513	51890513	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcctggaccctggccgGggggctcaccgatgctgtct	16	15	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51890513	T	T	51890513	1	4	213	0	1	0	0	0	0	0	0	0	8867	1232	43	2		2	LIM2	19	51890513	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	1685737	51890513	7238470	350	165921											
CNOT3	4849	broad.mit.edu	37	chr19	54647826	54647826	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggcctggcccagaaggtaGatcctgcccagaaggagaag	15	10	0	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54647826	T	T	54647826	3	4	213	1	0	0	0	0	1	0	0	0	3652	942	33	3	361	3	CNOT3	19	54647826	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	2757313	54647826	4481157	351	165922											
LILRB1	10859	broad.mit.edu	37	chr19	55146165	55146165	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgctcctcctcctcctcctCctcttcctcatcctccgaca	2	23	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55146165	A	A	55146165	2	1	213	1	0	0	0	0	0	0	0	1	8862	842	30	3		3	LILRB1	19	55146165	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	498339	55146165	3982818	352	165923											
EPS8L1	54869	broad.mit.edu	37	chr19	55591926	55591926	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtgggggcgaggaaccAcccggactgggtctccatgg	18	11	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55591926	T	T	55591926	1	4	213	0	1	0	0	0	0	0	0	0	5237	174	6	5		5	EPS8L1	19	55591926	Intron	SNP	A	TCGA-75-5125-01A-01D-1753-08	445761	55591926	3537057	353	165924											
NLRP9	338321	broad.mit.edu	37	chr19	56244284	56244284	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagtaggagaaatacgActtcttttcagattcactga	8	6	3	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56244284	T	T	56244284	3	4	213	1	0	0	0	0	1	0	0	0	10579	275	10	5	2094	5	NLRP9	19	56244284	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	652358	56244284	2884699	354	165925											
ZNF471	57573	broad.mit.edu	37	chr19	57037372	57037372	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaatcccctactgttaatCagagatgtcccactggataa	6	12	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57037372	G	G	57037372	1	3	213	0	1	0	0	0	0	0	0	0	18057	841	29	4		4	ZNF471	19	57037372	3'UTR	SNP	C	TCGA-75-5125-01A-01D-1753-08	793088	57037372	2091611	355	165926											
ZNF835	90485	broad.mit.edu	37	chr19	57175150	57175150	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccgctgcactcgtaggGcttctccccggtgtgcacga	13	15	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57175150	T	T	57175150	3	4	213	1	0	0	0	0	1	0	0	0	18315	1203	42	3	198	3	ZNF835	19	57175150	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	137778	57175150	1953833	356	165927											
C20orf103	24141	broad.mit.edu	37	chr20	9498855	9498855	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaccttttgacattatctCagattttgtcttcagtgaag	6	9	3	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9498855	T	T	9498855	3	4	213	1	0	0	0	0	1	0	0	0	2097	838	29	4	662	4	C20orf103	20	9498855	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08		9498855	53526665	357	165928											
MKKS	8195	broad.mit.edu	37	chr20	10393428	10393428	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctccggataaagttgtAcaaaagagtgccaccttgag	11	8	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10393428	G	G	10393428	2	3	213	1	0	0	0	0	0	0	0	1	9693	389	14	5		5	MKKS	20	10393428	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	894573	10393428	52632092	358	165929											
SPTLC3	55304	broad.mit.edu	37	chr20	12989965	12989970	+	In_Frame_Del	DEL	ACAAGA	-	-													caacgggaaacttcacaatcAcaagaaacagagcaatggct							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	12989970	-	-	12989965	7	5	213	1	0	1	0	1	0	0	0	0	15243	159	6	0	52	0	SPTLC3	20	12989965	In_Frame_Del	DEL	ACAAGA	TCGA-75-5125-01A-01D-1753-08	2596537	12989965	50035555	359	165930											
PCSK2	5126	broad.mit.edu	37	chr20	17417243	17417243	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagtggccccagagcaccTgagatctccaaccattccaa	7	16	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17417243	A	A	17417243	1	1	213	0	1	0	0	0	0	0	0	0	11695	1595	55	5		5	PCSK2	20	17417243	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	4427278	17417243	45608277	360	165931											
BPIL1	80341	broad.mit.edu	37	chr20	31600625	31600625	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggatccggattctgaatGtccatgtgccccgcctccac	10	15	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31600625	T	T	31600625	3	4	213	1	0	0	0	0	1	0	0	0	1500	1377	48	3	230	3	BPIL1	20	31600625	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	14183382	31600625	31424895	361	165932											
PROCR	10544	broad.mit.edu	37	chr20	33764041	33764041	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctagagcccatgtcttcttCgaagtggctgtgaatgggag	13	8	3	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33764041	T	T	33764041	2	4	213	1	0	0	0	0	0	0	0	1	12653	883	31	4		4	PROCR	20	33764041	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	2163416	33764041	29261479	362	165933											
ELMO2	63916	broad.mit.edu	37	chr20	45017842	45017842	+	Frame_Shift_Del	DEL	C	-	-													gactgggtcctctccatcagCtggcgtgcagcccgggacta							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	45017842	-	-	45017842	7	5	213	1	0	1	0	1	0	0	0	0	5108	796	28	0	1965	0	ELMO2	20	45017842	Frame_Shift_Del	DEL	C	TCGA-75-5125-01A-01D-1753-08	11253801	45017842	18007678	363	165934											
CTCFL	140690	broad.mit.edu	37	chr20	56089731	56089731	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccgtgtttctgcagaataTgtattttcatggtcccgctc	9	11	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56089731	C	C	56089731	3	2	213	1	0	0	0	0	1	0	0	0	4035	1464	51	5	764	5	CTCFL	20	56089731	Missense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	11071889	56089731	6935789	364	165935											
ZNF831	128611	broad.mit.edu	37	chr20	57767422	57767422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacgccctacacctacaagGactccttccactttgacatc	4	18	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57767422	T	T	57767422	3	4	213	1	0	0	0	0	1	0	0	0	18314	1174	41	3	1350	3	ZNF831	20	57767422	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	1677691	57767422	5258098	365	165936											
PTK6	5753	broad.mit.edu	37	chr20	62164021	62164021	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggatctccgactgcagcatCtgctggtgcaggaggttgtc	14	10	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62164021	T	T	62164021	2	4	213	1	0	0	0	0	0	0	0	1	12870	912	32	4		4	PTK6	20	62164021	Silent	SNP	C	TCGA-75-5125-01A-01D-1753-08	4396599	62164021	861499	366	165937											
HSPA13	6782	broad.mit.edu	37	chr21	15753912	15753912	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attttatcaaactagtacaaTgtactaaattactgtagcaa	4	6	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15753912	C	C	15753912	1	2	213	0	1	0	0	0	0	0	0	0	7475	1479	51	5		5	HSPA13	21	15753912	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08		15753912	32375983	367	165938											
GART	2618	broad.mit.edu	37	chr21	34897065	34897065	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcactacagctaacttgctTagagttttacctgggctgct	10	10	0	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34897065	C	C	34897065	1	2	213	0	1	0	0	0	0	0	0	0	6305	1769	61	5		5	GART	21	34897065	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	19143153	34897065	13232830	368	165939											
SON	6651	broad.mit.edu	37	chr21	34926907	34926907	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagaggaaaaagatgattaTgaaatttttgtaaaagttaa	8	1	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34926907	C	C	34926907	2	2	213	1	0	0	0	0	0	0	0	1	15040	1471	51	5		5	SON	21	34926907	Silent	SNP	T	TCGA-75-5125-01A-01D-1753-08	29842	34926907	13202988	369	165940											
PCBP3	54039	broad.mit.edu	37	chr21	47329121	47329121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtctcctggtcctccctGgcctggcctggccactttgt	11	16	1	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47329121	T	T	47329121	1	4	213	0	1	0	0	0	0	0	0	0	11596	1363	47	2		2	PCBP3	21	47329121	Intron	SNP	G	TCGA-75-5125-01A-01D-1753-08	12402214	47329121	800774	370	165941											
CRYBB2	1415	broad.mit.edu	37	chr22	25625530	25625531	+	Missense_Mutation	DNP	GG	CT	CT													ggagaaggtgtcatctgtgcGggtgcagagtggcacgtaag							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	25625531	CT	CT	25625530	3	2	213	1	0	0	0	0	1	0	0	0	3943	1116	39	4	448	4	CRYBB2	22	25625530	Missense_Mutation	DNP	GG	TCGA-75-5125-01A-01D-1753-08		25625530	25679036	371	165942											
DEPDC5	9681	broad.mit.edu	37	chr22	32179816	32179816	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tacactgttgtgaagcagatCttcagaactttttcatctta	6	8	4	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32179816	G	G	32179816	1	3	213	0	1	0	0	0	0	0	0	0	4482	928	32	4		4	DEPDC5	22	32179816	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	6554286	32179816	19124750	372	165943											
XRCC6	2547	broad.mit.edu	37	chr22	42042935	42042935	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacaaagatatagtgatctCtgtgggcatttataatctgg	9	6	2	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42042935	G	G	42042935	3	3	213	1	0	0	0	0	1	0	0	0	17584	913	32	4	831	4	XRCC6	22	42042935	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	9863119	42042935	9261631	373	165944											
CERK	64781	broad.mit.edu	37	chr22	47108061	47108061	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catagttaacatagaatttgTtaccgatgatgtcagtggtg	10	5	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47108061	C	C	47108061	1	2	213	0	1	0	0	0	0	0	0	0	3297	1740	60	5		5	CERK	22	47108061	Intron	SNP	T	TCGA-75-5125-01A-01D-1753-08	5065126	47108061	4196505	374	165945											
FAM47A	158724	broad.mit.edu	37	chrX	34148019	34148020	+	3'UTR	DNP	CC	AA	AA													gagtagtaaattgaaaactgCctaatcttcttccgatgcct							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	34148020	AA	AA	34148019	1	1	213	0	1	0	0	0	0	0	0	0	5620	754	26	3		3	FAM47A	23	34148019	3'UTR	DNP	CC	TCGA-75-5125-01A-01D-1753-08		34148019	121122541	375	165946											
FAM47B	170062	broad.mit.edu	37	chrX	34962818	34962818	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cttacgactctgttaagactCctattcaacgtgcagtgcaa	7	11	2	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34962818	G	G	34962818	3	3	213	1	0	0	0	0	1	0	0	0	5621	855	30	4	1872	4	FAM47B	23	34962818	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	814799	34962818	120307742	376	165947											
EBP	10682	broad.mit.edu	37	chrX	48382369	48382370	+	Frame_Shift_Ins	INS	-	GT	GT													tgtccctgtgctggtttgcaINSgtgtgtgggttcattcacct							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	48382370	GT	GT	48382369	7	5	213	1	0	1	1	0	0	0	0	0	4926	175	7	0	212	0	EBP	23	48382369	Frame_Shift_Ins	INS	-	TCGA-75-5125-01A-01D-1753-08	13419551	48382369	106888191	377	165948											
DGKK	139189	broad.mit.edu	37	chrX	50136332	50136332	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaagatactactaattgGcctgacacaacgaaaagaaa	7	8	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50136332	T	T	50136332	2	4	213	1	0	0	0	0	0	0	0	1	4512	1217	42	3		3	DGKK	23	50136332	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	1753963	50136332	105134228	378	165949											
FAM123B	139285	broad.mit.edu	37	chrX	63411835	63411835	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggggctaggccaggataAgacctaactgggtcaaggag	15	9	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63411835	T	T	63411835	2	4	213	1	0	0	0	0	0	0	0	1	5469	59	3	5		5	FAM123B	23	63411835	Silent	SNP	A	TCGA-75-5125-01A-01D-1753-08	13275503	63411835	91858725	379	165950											
POU3F4	5456	broad.mit.edu	37	chrX	82763628	82763628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcatccatcaccgctcgcCacacgtagcccaccactcac	5	20	3	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82763628	A	A	82763628	3	1	213	1	0	0	0	0	1	0	0	0	12373	594	21	2	298	2	POU3F4	23	82763628	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	19351793	82763628	72506932	380	165951											
POF1B	79983	broad.mit.edu	37	chrX	84560871	84560871	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtgtagtggttgccaatctCatccattttagcctgcaaca	8	11	1	0	rs150903638		TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84560871	T	T	84560871	3	4	213	1	0	0	0	0	1	0	0	0	12277	835	29	4	426	4	POF1B	23	84560871	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	1797243	84560871	70709689	381	165952											
RPA4	29935	broad.mit.edu	37	chrX	96139810	96139810	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtcaatgcacacatgatGctggataaagcccgtcgtga	11	10	1	2			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96139810	T	T	96139810	3	4	213	1	0	0	0	0	1	0	0	0	13650	1319	46	3	503	3	RPA4	23	96139810	Missense_Mutation	SNP	G	TCGA-75-5125-01A-01D-1753-08	11578939	96139810	59130750	382	165953											
TCEAL5	340543	broad.mit.edu	37	chrX	102529123	102529123	+	Frame_Shift_Del	DEL	C	-	-													tccttgggggaatcgtccgtCcccctgtcggtttttctttt							TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102529123	-	-	102529123	7	5	213	1	0	1	0	1	0	0	0	0	15796	842	30	0	255	0	TCEAL5	23	102529123	Frame_Shift_Del	DEL	C	TCGA-75-5125-01A-01D-1753-08	6389313	102529123	52741437	383	165954											
PAK3	5063	broad.mit.edu	37	chrX	110435468	110435468	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttaacagttatcttcttCgatggcaacttcgcctaaaa	5	9	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110435468	T	T	110435468	1	4	213	0	1	0	0	0	0	0	0	0	11496	899	31	4		4	PAK3	23	110435468	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	7906345	110435468	44835092	384	165955											
GRIA3	2892	broad.mit.edu	37	chrX	122319788	122319788	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgagaagcccttccatttgAattaccacgtagatcacttg	7	12	1	3			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122319788	G	G	122319788	3	3	213	1	0	0	0	0	1	0	0	0	6835	246	9	5	220	5	GRIA3	23	122319788	Missense_Mutation	SNP	A	TCGA-75-5125-01A-01D-1753-08	11884320	122319788	32950772	385	165956											
ATP11C	286410	broad.mit.edu	37	chrX	138844209	138844209	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctttaagtgtttaaactTtggaacagaataatcgctat	6	5	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138844209	A	A	138844209	4	1	213	1	0	0	0	0	0	1	0	0	1125	1850	64	5	937	5	ATP11C	23	138844209	Nonsense_Mutation	SNP	T	TCGA-75-5125-01A-01D-1753-08	16524421	138844209	16426351	386	165957											
MAGEC2	51438	broad.mit.edu	37	chrX	141291447	141291447	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gactcctcactgaatgagctCcatgaaaaagaggagcagca	10	10	1	4			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141291447	G	G	141291447	3	3	213	1	0	0	0	0	1	0	0	0	9273	856	30	4	798	4	MAGEC2	23	141291447	Missense_Mutation	SNP	C	TCGA-75-5125-01A-01D-1753-08	2447238	141291447	13979113	387	165958											
GABRQ	55879	broad.mit.edu	37	chrX	151818864	151818864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcgcctcagccctgccacCctaattccagtgtgtctcct	7	17	2	0			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151818864	A	A	151818864	1	1	213	0	1	0	0	0	0	0	0	0	6235	638	22	2		2	GABRQ	23	151818864	Intron	SNP	C	TCGA-75-5125-01A-01D-1753-08	10527417	151818864	3451696	388	165959											
IL9R	3581	broad.mit.edu	37	chrX	155233498	155233498	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcagcctggtggacccGgagtacctgccccggagaca	14	14	1	1			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155233498	T	T	155233498	2	4	213	1	0	0	0	0	0	0	0	1	7778	1103	39	1		1	IL9R	23	155233498	Silent	SNP	G	TCGA-75-5125-01A-01D-1753-08	3414634	155233498	37062	389	165960											
C1orf93	127281	broad.mit.edu	37	chr1	2519924	2519924	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagggtgtacaggccgggGggtggtgggagctcccagga	20	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2519924	T	T	2519924	1	4	214	0	1	0	0	0	0	0	0	0	2092	1247	43	2		2	C1orf93	1	2519924	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08		2519924	246730697	1	165961											
MEGF6	1953	broad.mit.edu	37	chr1	3410313	3410313	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccacacccacgcccttcCtgggcaggaccccagactca	8	20	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3410313	T	T	3410313	1	4	214	0	1	0	0	0	0	0	0	0	9555	696	24	4		4	MEGF6	1	3410313	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	890389	3410313	245840308	2	165962											
PLEKHG5	57449	broad.mit.edu	37	chr1	6533259	6533259	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagataccctggtcagggtCaggggtcatggccagccagc	14	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6533259	A	A	6533259	1	1	214	0	1	0	0	0	0	0	0	0	12168	841	29	3		3	PLEKHG5	1	6533259	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3122946	6533259	242717362	3	165963											
EXOSC10	5394	broad.mit.edu	37	chr1	11147725	11147725	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttactgattttgaaaagtCagctacaaagctaagttata	6	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11147725	G	G	11147725	1	3	214	0	1	0	0	0	0	0	0	0	5356	841	29	4		4	EXOSC10	1	11147725	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4614466	11147725	238102896	4	165964											
MTOR	2475	broad.mit.edu	37	chr1	11182049	11182049	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacatacccgcaacatgatgCgatgctcgatgttgagaagg	11	10	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11182049	G	G	11182049	3	3	214	1	0	0	0	0	1	0	0	0	10048	768	27	4	896	4	MTOR	1	11182049	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	34324	11182049	238068572	5	165965											
PRAMEF11	440560	broad.mit.edu	37	chr1	12884937	12884937	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctcagccctaatttgagCaaatctgctccagcagagag	9	12	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12884937	T	T	12884937	3	4	214	1	0	0	0	0	1	0	0	0	12528	710	25	4	140	4	PRAMEF11	1	12884937	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1702888	12884937	236365684	6	165966											
PRAMEF11	440560	broad.mit.edu	37	chr1	12887653	12887653	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	accatccagaagttctcacaGacatcctgtaaatccagcac	5	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12887653	A	A	12887653	2	1	214	1	0	0	0	0	0	0	0	1	12528	929	33	4		4	PRAMEF11	1	12887653	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2716	12887653	236362968	7	165967											
PRAMEF5	343068	broad.mit.edu	37	chr1	13014868	13014868	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atctacccacaaaggtagctCaggcattcatccagtgtact	7	12	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13014868	G	G	13014868	1	3	214	0	1	0	0	0	0	0	0	0	12542	841	29	4		4	PRAMEF5	1	13014868	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	127215	13014868	236235753	8	165968											
LOC440563	440563	broad.mit.edu	37	chr1	13183415	13183415	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agccacttttgccccttcgtGaggtgtttcctgatatgcgc	10	12	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13183415	T	T	13183415	4	4	214	1	0	0	0	0	0	1	0	0	8962	1294	45	3	427	3	LOC440563	1	13183415	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	168547	13183415	236067206	9	165969											
ZBTB17	7709	broad.mit.edu	37	chr1	16268907	16268907	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtcactgcagctcccaCcggcaccactgcgggcagag	13	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16268907	T	T	16268907	3	4	214	1	0	0	0	0	1	0	0	0	17653	507	18	4	372	4	ZBTB17	1	16268907	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3085492	16268907	232981714	10	165970											
ARHGEF19	128272	broad.mit.edu	37	chr1	16525582	16525582	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttccctgtgatatcttagtCatctagccacctcctgccca	5	15	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16525582	G	G	16525582	1	3	214	0	1	0	0	0	0	0	0	0	904	841	29	4		4	ARHGEF19	1	16525582	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	256675	16525582	232725039	11	165971											
KLHDC7A	127707	broad.mit.edu	37	chr1	18808542	18808542	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagacagggccgtggccctCcacccgaggcttcagccgga	14	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18808542	T	T	18808542	3	4	214	1	0	0	0	0	1	0	0	0	8431	855	30	4	1069	4	KLHDC7A	1	18808542	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2282960	18808542	230442079	12	165972											
PAX7	5081	broad.mit.edu	37	chr1	18962878	18962879	+	Intron	DNP	CC	AA	AA													cgacaaaggtagggaacttcCctgggctgcgaggccccagc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	18962879	AA	AA	18962878	1	1	214	0	1	0	0	0	0	0	0	0	11578	638	22	2		2	PAX7	1	18962878	Intron	DNP	CC	TCGA-75-5126-01A-01D-1753-08	154336	18962878	230287743	13	165973											
AKR7A2	8574	broad.mit.edu	37	chr1	19630930	19630930	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttctgctgcacagcgactCcactcacagccgtcccagcc	7	19	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19630930	A	A	19630930	1	1	214	0	1	0	0	0	0	0	0	0	475	870	30	3		3	AKR7A2	1	19630930	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	668052	19630930	229619691	14	165974											
EIF4G3	8672	broad.mit.edu	37	chr1	21177755	21177755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagccaagtctctcacctgaCtcccttgttttatttcgctc	5	14	2	1	rs34661194	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21177755	A	A	21177755	3	1	214	1	0	0	0	0	1	0	0	0	5080	564	20	3	1197	3	EIF4G3	1	21177755	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1546825	21177755	228072866	15	165975											
RHCE	6006	broad.mit.edu	37	chr1	25717432	25717432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagagagggtggttggcCagaatcacactcctgctcca	13	12	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25717432	A	A	25717432	1	1	214	0	1	0	0	0	0	0	0	0	13434	609	21	2		2	RHCE	1	25717432	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4539677	25717432	223533189	16	165976											
CCDC21	64793	broad.mit.edu	37	chr1	26581979	26581979	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatgaaagacaagaagagGcgaggaagtttgatattcct	12	6	0	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26581979	C	C	26581979	3	2	214	1	0	0	0	0	1	0	0	0	2823	1203	42	4	536	4	CCDC21	1	26581979	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	864547	26581979	222668642	17	165977											
RCC1	1104	broad.mit.edu	37	chr1	28862433	28862433	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatccaggggaagccggGgccacgtgagattccaggat	15	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28862433	T	T	28862433	3	4	214	1	0	0	0	0	1	0	0	0	13281	1232	43	2	831	2	RCC1	1	28862433	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2280454	28862433	220388188	18	165978											
CSMD2	114784	broad.mit.edu	37	chr1	34286003	34286003	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgcaggaaggccagccCctgtcttcctcccagccagg	10	18	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34286003	A	A	34286003	1	1	214	0	1	0	0	0	0	0	0	0	3979	638	22	2		2	CSMD2	1	34286003	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	5423570	34286003	214964618	19	165979											
ADPRHL2	54936	broad.mit.edu	37	chr1	36558117	36558117	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccagggaggaagtggtgtctGagctaggtgagtgggtctgc	19	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36558117	C	C	36558117	3	2	214	1	0	0	0	0	1	0	0	0	333	1291	45	4	814	4	ADPRHL2	1	36558117	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2272114	36558117	212692504	20	165980											
MAP7D1	55700	broad.mit.edu	37	chr1	36640515	36640515	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtgggagcaggtgctcCgtgtcggcagttaacctgcc	15	12	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36640515	T	T	36640515	2	4	214	1	0	0	0	0	0	0	0	1	9359	639	23	4		4	MAP7D1	1	36640515	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	82398	36640515	212610106	21	165981											
MTF1	4520	broad.mit.edu	37	chr1	38300630	38300630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaagacactgatcttgacCctgacttcttcccgctcact	6	15	4	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38300630	A	A	38300630	1	1	214	0	1	0	0	0	0	0	0	0	10016	638	22	2		2	MTF1	1	38300630	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1660115	38300630	210949991	22	165982											
AKIRIN1	79647	broad.mit.edu	37	chr1	39466625	39466625	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccgcacctggcccaaactCactttttcttttggccaggt	7	15	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39466625	T	T	39466625	1	4	214	0	1	0	0	0	0	0	0	0	461	841	29	4		4	AKIRIN1	1	39466625	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1165995	39466625	209783996	23	165983											
ZMPSTE24	10269	broad.mit.edu	37	chr1	40758302	40758302	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattctcatcctccactgctAgagagacttcaagctttgaa	6	11	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40758302	G	G	40758302	2	3	214	1	0	0	0	0	0	0	0	1	17824	407	15	5		5	ZMPSTE24	1	40758302	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	1291677	40758302	208492319	24	165984											
SLFNL1	200172	broad.mit.edu	37	chr1	41486213	41486213	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgcgccgagggagcctcctcGaggtcagagtactccgtcag	14	13	2	1	rs146820397	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41486213	C	C	41486213	2	2	214	1	0	0	0	0	0	0	0	1	14852	1045	37	4		4	SLFNL1	1	41486213	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	727911	41486213	207764408	25	165985											
FOXJ3	22887	broad.mit.edu	37	chr1	42654378	42654378	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgtacgaatgagaaaatgaGaaaaatcaagaagataacta	8	4	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42654378	C	C	42654378	1	2	214	0	1	0	0	0	0	0	0	0	6073	957	33	4		4	FOXJ3	1	42654378	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1168165	42654378	206596243	26	165986											
CCDC30	728621	broad.mit.edu	37	chr1	43119035	43119035	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acttttcacattcatcctttCtttccttttaggaaacaaca	2	11	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43119035	G	G	43119035	1	3	214	0	1	0	0	0	0	0	0	0	2832	928	32	4		4	CCDC30	1	43119035	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	464657	43119035	206131586	27	165987			1	132		5	5	517	C		1.319055e-08
CCDC30	728621	broad.mit.edu	37	chr1	43119141	43119141	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagtcaagacaaataaagtCaagtctatctgagatggact	8	6	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43119141	G	G	43119141	1	3	214	0	1	0	0	0	0	0	0	0	2832	841	29	4		4	CCDC30	1	43119141	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	106	43119141	206131480	28	165988			1	132		5	5	517	C		1.319055e-08
CCDC30	728621	broad.mit.edu	37	chr1	43119231	43119231	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttgagaaggcatagctttCtggggtcattttctctacat	10	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43119231	T	T	43119231	1	4	214	0	1	0	0	0	0	0	0	0	2832	928	32	4		4	CCDC30	1	43119231	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	90	43119231	206131390	29	165989			1	132		5	5	517	C		1.319055e-08
CCDC30	728621	broad.mit.edu	37	chr1	43119529	43119529	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tagagtcatttgcaagtcttCaagagactgaagagatcaag	10	6	4	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43119529	T	T	43119529	4	4	214	1	0	0	0	0	0	1	0	0	2832	827	29	4	2240	4	CCDC30	1	43119529	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	298	43119529	206131092	30	165990			1	132		5	5	517	C		1.319055e-08
CCDC30	728621	broad.mit.edu	37	chr1	43119551	43119551	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagactgaagagatcaagtCaaaagaagcaatggcaagtt	11	5	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43119551	G	G	43119551	4	3	214	1	0	0	0	0	0	1	0	0	2832	838	29	4	2262	4	CCDC30	1	43119551	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	22	43119551	206131070	31	165991			1	132		5	5	517	C		1.319055e-08
LEPRE1	64175	broad.mit.edu	37	chr1	43215927	43215927	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatccaggcggaagtaggaCtccatgatgcgccgcacctt	12	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43215927	T	T	43215927	2	4	214	1	0	0	0	0	0	0	0	1	8801	564	20	4		4	LEPRE1	1	43215927	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	96376	43215927	206034694	32	165992											
KIAA0467	23334	broad.mit.edu	37	chr1	43897391	43897391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtctaactgtagatccGctggttgttggaagatgaga	13	6	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43897391	T	T	43897391	3	4	214	1	0	0	0	0	1	0	0	0	8248	1087	38	3	2470	3	KIAA0467	1	43897391	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	681464	43897391	205353230	33	165993											
POMGNT1	55624	broad.mit.edu	37	chr1	46660384	46660384	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtttgggggctttttccCatctccctgcctactttcat	7	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46660384	T	T	46660384	1	4	214	0	1	0	0	0	0	0	0	0	12338	609	21	4		4	POMGNT1	1	46660384	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2762993	46660384	202590237	34	165994											
CYP4Z1	199974	broad.mit.edu	37	chr1	47534477	47534477	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtacagagcagcaacaaaGagggtctcagggtgtctgtg	14	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47534477	T	T	47534477	1	4	214	0	1	0	0	0	0	0	0	0	4227	957	33	3		3	CYP4Z1	1	47534477	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	874093	47534477	201716144	35	165995											
AGBL4	84871	broad.mit.edu	37	chr1	50310439	50310439	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaatatccaacaatgtcatCttggtagaaagattcctctg	7	8	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50310439	T	T	50310439	1	4	214	0	1	0	0	0	0	0	0	0	377	928	32	4		4	AGBL4	1	50310439	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2775962	50310439	198940182	36	165996											
FAF1	11124	broad.mit.edu	37	chr1	51425436	51425436	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gggaagagggccagatacttCacctgaaaatccgccaggat	12	10	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51425436	T	T	51425436	1	4	214	0	1	0	0	0	0	0	0	0	5415	841	29	4		4	FAF1	1	51425436	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1114997	51425436	197825185	37	165997											
FAM159A	348378	broad.mit.edu	37	chr1	53122714	53122714	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggaccagtcccataaaCattcaataaatgtctccata	5	10	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53122714	T	T	53122714	1	4	214	0	1	0	0	0	0	0	0	0	5514	493	17	4		4	FAM159A	1	53122714	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1697278	53122714	196127907	38	165998											
GLIS1	148979	broad.mit.edu	37	chr1	54060350	54060350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagggtgaggaggaggCtggggaggtggggggtaggc	26	4	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54060350	A	A	54060350	3	1	214	1	0	0	0	0	1	0	0	0	6509	797	28	3	1668	3	GLIS1	1	54060350	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	937636	54060350	195190271	39	165999											
LDLRAD1	388633	broad.mit.edu	37	chr1	54483820	54483820	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcccgactggggctgtgTgcagagagctcagcacgggt	17	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54483820	A	A	54483820	1	1	214	0	1	0	0	0	0	0	0	0	8777	1711	59	5		5	LDLRAD1	1	54483820	5'Flank	SNP	T	TCGA-75-5126-01A-01D-1753-08	423470	54483820	194766801	40	166000											
INADL	10207	broad.mit.edu	37	chr1	62237296	62237296	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatacaactctgcctgaaAcagtgagttgcaaatttgaa	8	7	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62237296	G	G	62237296	3	3	214	1	0	0	0	0	1	0	0	0	7801	43	2	5	736	5	INADL	1	62237296	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	7753476	62237296	187013325	41	166001											
INADL	10207	broad.mit.edu	37	chr1	62365226	62365226	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagtatgccctaaaattgTgtgtatttttttctttctcc	6	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62365226	C	C	62365226	1	2	214	0	1	0	0	0	0	0	0	0	7801	1711	59	5		5	INADL	1	62365226	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	127930	62365226	186885395	42	166002											
L1TD1	54596	broad.mit.edu	37	chr1	62677093	62677093	+	3'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tttcctcccccagcatgcatCcaaaaatcaacaagtaaaac	3	14	1	0	rs79364597		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62677093	G	G	62677093	1	3	214	0	1	0	0	0	0	0	0	0	8661	870	30	4		4	L1TD1	1	62677093	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	311867	62677093	186573528	43	166003											
DNAJC6	9829	broad.mit.edu	37	chr1	65864515	65864515	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttctagtacgcctgctgtGaacattcagccagatgtttc	9	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65864515	A	A	65864515	2	1	214	1	0	0	0	0	0	0	0	1	4693	1277	45	4		4	DNAJC6	1	65864515	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	3187422	65864515	183386106	44	166004											
SGIP1	84251	broad.mit.edu	37	chr1	67147924	67147924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaagatgattacttagaaaCaatctcatctcctaaagatt	4	7	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67147924	A	A	67147924	3	1	214	1	0	0	0	0	1	0	0	0	14319	478	17	3	1245	3	SGIP1	1	67147924	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1283409	67147924	182102697	45	166005											
SGIP1	84251	broad.mit.edu	37	chr1	67206943	67206943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttaccttgtaataatgtGtttttttttaggggtgggtt	11	3	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67206943	A	A	67206943	1	1	214	0	1	0	0	0	0	0	0	0	14319	1392	48	4		4	SGIP1	1	67206943	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	59019	67206943	182043678	46	166006											
LRRC40	55631	broad.mit.edu	37	chr1	70654875	70654875	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaatctgtctgctcccacCatctttcagtagcaccaaac	4	15	5	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70654875	A	A	70654875	3	1	214	1	0	0	0	0	1	0	0	0	9085	595	21	2	1631	2	LRRC40	1	70654875	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3447932	70654875	178595746	47	166007											
C1orf173	127254	broad.mit.edu	37	chr1	75102182	75102182	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgacatgtttccagaaccAattaataacccaataaattg	4	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75102182	T	T	75102182	1	4	214	0	1	0	0	0	0	0	0	0	2034	145	5	5		5	C1orf173	1	75102182	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	4447307	75102182	174148439	48	166008											
ZZZ3	26009	broad.mit.edu	37	chr1	78098439	78098439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcaacaccattgacagCcaaatagcctgtgatttctt	6	11	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78098439	A	A	78098439	3	1	214	1	0	0	0	0	1	0	0	0	18385	739	26	3	2154	3	ZZZ3	1	78098439	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2996257	78098439	171152182	49	166009											
IFI44	10561	broad.mit.edu	37	chr1	79119870	79119870	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcactgatattcattcattCattcagccaattattcgaca	3	10	5	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79119870	T	T	79119870	1	4	214	0	1	0	0	0	0	0	0	0	7587	841	29	4		4	IFI44	1	79119870	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1021431	79119870	170130751	50	166010											
TTLL7	79739	broad.mit.edu	37	chr1	84412790	84412790	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatttttatatattccaAataaaagcaaacctacccat	1	8	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84412790	C	C	84412790	1	2	214	0	1	0	0	0	0	0	0	0	16858	29	1	5		5	TTLL7	1	84412790	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	5292920	84412790	164837831	51	166011											
CLCA2	9635	broad.mit.edu	37	chr1	86890087	86890087	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caattaatcctcaggtacctGagaatcagaacctcatctca	5	12	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86890087	C	C	86890087	3	2	214	1	0	0	0	0	1	0	0	0	3489	1291	45	4	159	4	CLCA2	1	86890087	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2477297	86890087	162360534	52	166012											
CLCA4	22802	broad.mit.edu	37	chr1	87040315	87040315	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaaggacacgttctttctCatcacatggaacagtctgcc	9	11	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87040315	G	G	87040315	2	3	214	1	0	0	0	0	0	0	0	1	3490	813	29	4		4	CLCA4	1	87040315	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	150228	87040315	162210306	53	166013											
BARHL2	343472	broad.mit.edu	37	chr1	91182622	91182622	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagatggggtggcctgactcCtaaaatccgcggtcctggcc	14	12	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91182622	G	G	91182622	3	3	214	1	0	0	0	0	1	0	0	0	1319	681	24	4	1044	4	BARHL2	1	91182622	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4142307	91182622	158067999	54	166014											
HFM1	164045	broad.mit.edu	37	chr1	91742270	91742270	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaattgttgactctttaAtttctgacttctgtgcaact	6	7	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91742270	G	G	91742270	3	3	214	1	0	0	0	0	1	0	0	0	7150	101	4	5	836	5	HFM1	1	91742270	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	559648	91742270	157508351	55	166015											
CDC7	8317	broad.mit.edu	37	chr1	91967261	91967261	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttagctggcattttgcatctCaattggcttgtgatggaggc	12	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91967261	G	G	91967261	1	3	214	0	1	0	0	0	0	0	0	0	3114	841	29	4		4	CDC7	1	91967261	5'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	224991	91967261	157283360	56	166016											
RPL5	6125	broad.mit.edu	37	chr1	93306072	93306072	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatagtagggcacatgaaAtgaaaccaagtactgtttgc	9	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93306072	G	G	93306072	1	3	214	0	1	0	0	0	0	0	0	0	13708	116	4	5		5	RPL5	1	93306072	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	1338811	93306072	155944549	57	166017											
MTF2	22823	broad.mit.edu	37	chr1	93575769	93575769	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtaagtcttatgtatggtCttttattctctaaacagaga	7	5	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93575769	G	G	93575769	1	3	214	0	1	0	0	0	0	0	0	0	10017	928	32	4		4	MTF2	1	93575769	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	269697	93575769	155674852	58	166018											
ABCD3	5825	broad.mit.edu	37	chr1	94982646	94982646	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcagaggcaactatgaattCaaacagataacagaagatac	9	7	1	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94982646	G	G	94982646	3	3	214	1	0	0	0	0	1	0	0	0	62	825	29	4	2062	4	ABCD3	1	94982646	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1406877	94982646	154267975	59	166019											
AGL	178	broad.mit.edu	37	chr1	100345510	100345510	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctaggaatttgcaacCcaatttatatgtagtagctg	9	7	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100345510	T	T	100345510	3	4	214	1	0	0	0	0	1	0	0	0	384	623	22	4	1758	4	AGL	1	100345510	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	5362864	100345510	148905111	60	166020											
CCDC76	54482	broad.mit.edu	37	chr1	100598748	100598748	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacctccgcgacgtcgccGcacgcgcctggttttccagc	12	18	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100598748	T	T	100598748	2	4	214	1	0	0	0	0	0	0	0	1	2878	1074	38	3		3	CCDC76	1	100598748	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	253238	100598748	148651873	61	166021											
DBT	1629	broad.mit.edu	37	chr1	100680343	100680343	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacaaataaatgtcctactCaagccttgtttgaaatgaat	5	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100680343	G	G	100680343	1	3	214	0	1	0	0	0	0	0	0	0	4291	841	29	4		4	DBT	1	100680343	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	81595	100680343	148570278	62	166022											
RTCD1	8634	broad.mit.edu	37	chr1	100732078	100732078	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtaccccaacctttgcAgggcggccagatcctgagag	11	15	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100732078	T	T	100732078	5	4	214	1	0	0	0	0	0	0	1	0	13829	202	7	5	50	5	RTCD1	1	100732078	Splice_Site	SNP	A	TCGA-75-5126-01A-01D-1753-08	51735	100732078	148518543	63	166023											
S1PR1	1901	broad.mit.edu	37	chr1	101704852	101704852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacagctaacctgctcttGtctggggccaccacctacaa	7	15	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101704852	T	T	101704852	3	4	214	1	0	0	0	0	1	0	0	0	13904	1368	48	3	314	3	S1PR1	1	101704852	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	972774	101704852	147545769	64	166024											
COL11A1	1301	broad.mit.edu	37	chr1	103548296	103548296	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaatactaaaagtagtttTagtagtaacaaaagtgtaat	7	2	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103548296	C	C	103548296	1	2	214	0	1	0	0	0	0	0	0	0	3699	1769	61	5		5	COL11A1	1	103548296	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1843444	103548296	145702325	65	166025											
VAV3	10451	broad.mit.edu	37	chr1	108185330	108185330	+	Missense_Mutation	SNP	G	T	T													gggtccttcatgcagagctgGgggtggtgttccagaatagt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108185330	T	T	108185330	3	4	214	1	0	0	0	0	1	0	0	0	17260	1232	43	2	750	2	VAV3	1	108185330	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4637034	108185330	141065291	66	166026	696	2									
VAV3	10451	broad.mit.edu	37	chr1	108185332	108185332	+	Missense_Mutation	SNP	G	C	C													gtccttcatgcagagctgggGgtggtgttccagaatagttc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108185332	C	C	108185332	3	2	214	1	0	0	0	0	1	0	0	0	17260	1232	43	4	752	4	VAV3	1	108185332	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2	108185332	141065289	67	166027	696	2									
STXBP3	6814	broad.mit.edu	37	chr1	109318934	109318934	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaaagaaagataattgtttGatccttttttccatttctag	6	5	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109318934	C	C	109318934	1	2	214	0	1	0	0	0	0	0	0	0	15472	1305	45	4		4	STXBP3	1	109318934	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1133602	109318934	139931687	68	166028											
WDR47	22911	broad.mit.edu	37	chr1	109525213	109525213	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaaaagaaaaacagcacttGaaactgatattacataccag	5	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109525213	C	C	109525213	1	2	214	0	1	0	0	0	0	0	0	0	17427	1305	45	4		4	WDR47	1	109525213	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	206279	109525213	139725408	69	166029											
GSTM2	2946	broad.mit.edu	37	chr1	110214125	110214125	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatttcatcgcttatgatGtccttgagagaaaccaagta	9	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110214125	A	A	110214125	3	1	214	1	0	0	0	0	1	0	0	0	6904	1377	48	4	513	4	GSTM2	1	110214125	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	688912	110214125	139036496	70	166030											
GSTM5	2949	broad.mit.edu	37	chr1	110256121	110256121	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagctgccctacttgattGatggggctcacaagatcacc	9	13	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110256121	T	T	110256121	3	4	214	1	0	0	0	0	1	0	0	0	6907	1290	45	3	207	3	GSTM5	1	110256121	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	41996	110256121	138994500	71	166031											
EPS8L3	79574	broad.mit.edu	37	chr1	110293210	110293210	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcctgcaggcttttcCaactggccctctctctcacc	9	17	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110293210	A	A	110293210	1	1	214	0	1	0	0	0	0	0	0	0	5239	609	21	2		2	EPS8L3	1	110293210	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	37089	110293210	138957411	72	166032											
MAGI3	260425	broad.mit.edu	37	chr1	114189153	114189153	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagtttggaggccataaatGagcctattcctcagcctatg	10	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114189153	A	A	114189153	3	1	214	1	0	0	0	0	1	0	0	0	9284	1291	45	4	2090	4	MAGI3	1	114189153	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3895943	114189153	135061468	73	166033											
CD58	965	broad.mit.edu	37	chr1	117078851	117078851	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgggagatggaagagactCtggaaaaaaaagtataatat	12	2	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117078851	G	G	117078851	5	3	214	1	0	0	0	0	0	0	1	0	3055	927	32	4	408	4	CD58	1	117078851	Splice_Site	SNP	C	TCGA-75-5126-01A-01D-1753-08	2889698	117078851	132171770	74	166034											
WDR3	10885	broad.mit.edu	37	chr1	118492817	118492817	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaccttaagaatttgggttGaggctataaagaagtggcct	12	5	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	118492817	C	C	118492817	1	2	214	0	1	0	0	0	0	0	0	0	17412	1305	45	4		4	WDR3	1	118492817	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1413966	118492817	130757804	75	166035											
WDR3	10885	broad.mit.edu	37	chr1	118501533	118501533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgttttgtttttctatcagGattcactttggacagatcac	8	7	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118501533	T	T	118501533	3	4	214	1	0	0	0	0	1	0	0	0	17412	1188	41	3	2681	3	WDR3	1	118501533	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	8716	118501533	130749088	76	166036											
NOTCH2	4853	broad.mit.edu	37	chr1	120478062	120478062	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttataacttaagacaatgccCtggatggaaaatggataagg	10	5	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120478062	A	A	120478062	1	1	214	0	1	0	0	0	0	0	0	0	10643	696	24	2		2	NOTCH2	1	120478062	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1976529	120478062	128772559	77	166037											
ANKRD34A	284615	broad.mit.edu	37	chr1	145473739	145473739	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacgcctgcaaggccaaGggtacggaggtcatcatcat	13	11	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145473739	T	T	145473739	3	4	214	1	0	0	0	0	1	0	0	0	662	991	35	2	413	2	ANKRD34A	1	145473739	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	24995677	145473739	103776882	78	166038											
SEMA6C	10500	broad.mit.edu	37	chr1	151111780	151111780	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttctctttccttctcattttCccctgtggcctgggatggaa	8	12	2	0	rs34522285		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151111780	A	A	151111780	1	1	214	0	1	0	0	0	0	0	0	0	14154	870	30	3		3	SEMA6C	1	151111780	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	5638041	151111780	98138841	79	166039											
SELENBP1	8991	broad.mit.edu	37	chr1	151337871	151337871	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagacatgctctgcatgCccatccctggcctggacagt	9	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151337871	A	A	151337871	1	1	214	0	1	0	0	0	0	0	0	0	14127	754	26	3		3	SELENBP1	1	151337871	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	226091	151337871	97912750	80	166040											
SNX27	81609	broad.mit.edu	37	chr1	151640909	151640909	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actagggaagtttcttatatCttttcactccagctttctgt	6	9	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151640909	T	T	151640909	1	4	214	0	1	0	0	0	0	0	0	0	15011	928	32	4		4	SNX27	1	151640909	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	303038	151640909	97609712	81	166041											
TCHH	7062	broad.mit.edu	37	chr1	152082950	152082950	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcttctcgcgctcctctcTctgtagctcctcctcctcct	4	20	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152082950	C	C	152082950	3	2	214	1	0	0	0	0	1	0	0	0	15822	1559	54	5	3092	5	TCHH	1	152082950	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	442041	152082950	97167671	82	166042											
FLG	2312	broad.mit.edu	37	chr1	152284173	152284173	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactaccactggacccccaGtgtccactgtctctgactgc	8	16	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152284173	T	T	152284173	3	4	214	1	0	0	0	0	1	0	0	0	5979	1020	36	3	9000	3	FLG	1	152284173	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	201223	152284173	96966448	83	166043											
LCE1F	353137	broad.mit.edu	37	chr1	152748972	152748972	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagtgccctcctgtctcttCctgctgcagcgtcagctccg	9	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152748972	T	T	152748972	3	4	214	1	0	0	0	0	1	0	0	0	8736	855	30	4	127	4	LCE1F	1	152748972	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	464799	152748972	96501649	84	166044											
PGLYRP3	114771	broad.mit.edu	37	chr1	153270489	153270489	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaaagcctgcccaggggaCaggatgttgaccacgtcact	11	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153270489	T	T	153270489	2	4	214	1	0	0	0	0	0	0	0	1	11890	465	17	4		4	PGLYRP3	1	153270489	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	521517	153270489	95980132	85	166045											
NUP210L	91181	broad.mit.edu	37	chr1	153974177	153974177	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatcttttcaaattcctgatCtcttgttctgttttggttca	5	8	5	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153974177	T	T	153974177	1	4	214	0	1	0	0	0	0	0	0	0	10856	928	32	4		4	NUP210L	1	153974177	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	703688	153974177	95276444	86	166046											
AQP10	89872	broad.mit.edu	37	chr1	154295719	154295719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcccttcctccacagatGccctacagaactatacaggt	6	14	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154295719	T	T	154295719	3	4	214	1	0	0	0	0	1	0	0	0	824	1319	46	3	387	3	AQP10	1	154295719	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	321542	154295719	94954902	87	166047											
C1orf66	51093	broad.mit.edu	37	chr1	156704034	156704034	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctgctgctacatgaagctGagtgaccctggcggctaccc	13	13	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156704034	C	C	156704034	2	2	214	1	0	0	0	0	0	0	0	1	2078	1277	45	4		4	C1orf66	1	156704034	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2408315	156704034	92546587	88	166048											
HDGF	3068	broad.mit.edu	37	chr1	156713537	156713537	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcttggggaggccccCggccagagccgggctcagag	15	15	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156713537	T	T	156713537	3	4	214	1	0	0	0	0	1	0	0	0	7085	652	23	4	107	4	HDGF	1	156713537	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	9503	156713537	92537084	89	166049											
HDGF	3068	broad.mit.edu	37	chr1	156714213	156714213	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccctccccagaccctccctCagccactcactccttccttt	2	24	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156714213	T	T	156714213	1	4	214	0	1	0	0	0	0	0	0	0	7085	841	29	4		4	HDGF	1	156714213	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	676	156714213	92536408	90	166050											
SH2D2A	9047	broad.mit.edu	37	chr1	156779494	156779494	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgcatcgggactggggCttgcccctgtttgatgattg	13	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156779494	A	A	156779494	3	1	214	1	0	0	0	0	1	0	0	0	14345	797	28	3	508	3	SH2D2A	1	156779494	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	65281	156779494	92471127	91	166051											
CD1D	912	broad.mit.edu	37	chr1	158146772	158146772	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagctctttaaaaacataaTcctttgaagtatacgagagg	8	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158146772	A	A	158146772	1	1	214	0	1	0	0	0	0	0	0	0	3007	1450	50	5		5	CD1D	1	158146772	5'Flank	SNP	T	TCGA-75-5126-01A-01D-1753-08	1367278	158146772	91103849	92	166052											
OR10X1	128367	broad.mit.edu	37	chr1	158548836	158548836	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tataagggactgctatgagtGtgtcatctcctgaggcttct	11	8	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158548836	T	T	158548836	3	4	214	1	0	0	0	0	1	0	0	0	11016	1377	48	3	121	3	OR10X1	1	158548836	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	402064	158548836	90701785	93	166053											
OR6N1	128372	broad.mit.edu	37	chr1	158735635	158735635	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaggaagggtgtgagcaCtgagtagaccactgccaggg	17	7	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158735635	A	A	158735635	3	1	214	1	0	0	0	0	1	0	0	0	11300	565	20	3	103	3	OR6N1	1	158735635	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	186799	158735635	90514986	94	166054											
CADM3	57863	broad.mit.edu	37	chr1	159169596	159169596	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cacgccatcatcggtgggatCgtggctttcattgtcttcct	10	12	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159169596	T	T	159169596	2	4	214	1	0	0	0	0	0	0	0	1	2594	874	31	4		4	CADM3	1	159169596	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	433961	159169596	90081025	95	166055											
PEA15	8682	broad.mit.edu	37	chr1	160181327	160181327	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccctttgtcgcctcccaaCcccagtcatggctgagtacg	8	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160181327	A	A	160181327	1	1	214	0	1	0	0	0	0	0	0	0	11805	522	18	3		3	PEA15	1	160181327	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1011731	160181327	89069294	96	166056											
NDUFS2	4720	broad.mit.edu	37	chr1	161180475	161180475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtttgatgttcctgttGgttctcgaggggactgctat	13	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161180475	T	T	161180475	3	4	214	1	0	0	0	0	1	0	0	0	10387	1348	47	2	995	2	NDUFS2	1	161180475	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	999148	161180475	88070146	97	166057											
ATF6	22926	broad.mit.edu	37	chr1	161771911	161771911	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagttctgccctctgctcAgccagtccttgctgttgctg	11	13	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161771911	C	C	161771911	3	2	214	1	0	0	0	0	1	0	0	0	1088	188	7	5	784	5	ATF6	1	161771911	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	591436	161771911	87478710	98	166058											
CD247	919	broad.mit.edu	37	chr1	167487604	167487604	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcccctacacatacacaaaGagtttctagaagttccctgc	5	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167487604	C	C	167487604	1	2	214	0	1	0	0	0	0	0	0	0	3018	957	33	4		4	CD247	1	167487604	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5715693	167487604	81763017	99	166059											
MYOC	4653	broad.mit.edu	37	chr1	171607703	171607703	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagacatgaataaagaccacGtgggcacaaaagggaagaaa	11	6	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171607703	C	C	171607703	1	2	214	0	1	0	0	0	0	0	0	0	10180	1160	40	4		4	MYOC	1	171607703	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4120099	171607703	77642918	100	166060											
ASTN1	460	broad.mit.edu	37	chr1	177001649	177001649	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagggagtcgagggtgcGcgtgacctggctggcaaagt	18	9	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177001649	T	T	177001649	3	4	214	1	0	0	0	0	1	0	0	0	1068	1087	38	3	3164	3	ASTN1	1	177001649	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5393946	177001649	72248972	101	166061											
FAM5B	57795	broad.mit.edu	37	chr1	177249713	177249713	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgaagggcccgcgtgtgcCcactgtgctccagacaatag	14	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177249713	T	T	177249713	2	4	214	1	0	0	0	0	0	0	0	1	5644	610	22	4		4	FAM5B	1	177249713	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	248064	177249713	72000908	102	166062											
C1orf125	126859	broad.mit.edu	37	chr1	179497459	179497459	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccgcatgtttctgtgttcTagcaaccttcaacatctaca	6	12	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179497459	C	C	179497459	1	2	214	0	1	0	0	0	0	0	0	0	2013	1537	53	5		5	C1orf125	1	179497459	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	2247746	179497459	69753162	103	166063											
CACNA1E	777	broad.mit.edu	37	chr1	181726077	181726077	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagagttctgcagcactctGtagatgtgacagaggaagac	12	7	2	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181726077	T	T	181726077	3	4	214	1	0	0	0	0	1	0	0	0	2568	1377	48	3	4262	3	CACNA1E	1	181726077	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2228618	181726077	67524544	104	166064											
C1orf14	81626	broad.mit.edu	37	chr1	182869053	182869053	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaactaccatttcagtgGggtatgagaatcatgtatta	9	5	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182869053	T	T	182869053	1	4	214	0	1	0	0	0	0	0	0	0	2020	1247	43	2		2	C1orf14	1	182869053	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	1142976	182869053	66381568	105	166065											
C1orf26	54823	broad.mit.edu	37	chr1	185153463	185153463	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgttagaattttgaagacAacagaagtaccaggtattta	8	4	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185153463	G	G	185153463	2	3	214	1	0	0	0	0	0	0	0	1	2057	117	5	5		5	C1orf26	1	185153463	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	2284410	185153463	64097158	106	166066											
HMCN1	83872	broad.mit.edu	37	chr1	186034450	186034450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcacattatatctggtGgccgttttcttcaaattacc	5	12	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186034450	T	T	186034450	3	4	214	1	0	0	0	0	1	0	0	0	7287	1348	47	2	7788	2	HMCN1	1	186034450	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	880987	186034450	63216171	107	166067											
HMCN1	83872	broad.mit.edu	37	chr1	186089058	186089058	+	Intron	DEL	G	-	-													aagaaaatcatagcacatcaGtgttttataattcgaatcag							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	186089058	-	-	186089058	6	5	214	0	1	1	0	1	0	0	0	0	7287	1044	36	0		0	HMCN1	1	186089058	Intron	DEL	G	TCGA-75-5126-01A-01D-1753-08	54608	186089058	63161563	108	166068											
HMCN1	83872	broad.mit.edu	37	chr1	186141245	186141245	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaatggaatgaccaaggcaGaaaatggaacctgtattggt	11	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186141245	T	T	186141245	4	4	214	1	0	0	0	0	0	1	0	0	7287	943	33	3	16202	3	HMCN1	1	186141245	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	52187	186141245	63109376	109	166069											
FAM5C	339479	broad.mit.edu	37	chr1	190067370	190067370	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgctgaatcctgggatccCtgagtataggggtagtccag	14	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190067370	A	A	190067370	3	1	214	1	0	0	0	0	1	0	0	0	5645	680	24	2	225	2	FAM5C	1	190067370	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3926125	190067370	59183251	110	166070											
FAM5C	339479	broad.mit.edu	37	chr1	190195291	190195291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccatggcttgaatgtcCatggaggggcagttgcattc	12	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190195291	A	A	190195291	3	1	214	1	0	0	0	0	1	0	0	0	5645	594	21	2	1430	2	FAM5C	1	190195291	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	127921	190195291	59055330	111	166071											
ASPM	259266	broad.mit.edu	37	chr1	197072203	197072203	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggttgcatatttcttttTggttttgtaagctctgtatt	8	4	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197072203	C	C	197072203	3	2	214	1	0	0	0	0	1	0	0	0	1060	1821	63	5	4299	5	ASPM	1	197072203	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	6876912	197072203	52178418	112	166072											
CRB1	23418	broad.mit.edu	37	chr1	197191610	197191610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaactggctctaccaccaGgcagtgtcatttcataccct	6	14	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197191610	T	T	197191610	1	4	214	0	1	0	0	0	0	0	0	0	3880	1015	35	2		2	CRB1	1	197191610	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	119407	197191610	52059011	113	166073											
PTPRC	5788	broad.mit.edu	37	chr1	198668740	198668740	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccacgcacgcagactcgCagacgccctctgctggaact	9	17	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198668740	T	T	198668740	4	4	214	1	0	0	0	0	0	1	0	0	12905	711	25	4	365	4	PTPRC	1	198668740	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1477130	198668740	50581881	114	166074											
KLHL12	59349	broad.mit.edu	37	chr1	202880399	202880399	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccatctcaaaacgtaacCacgttcactttttccttcct	2	15	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202880399	G	G	202880399	1	3	214	0	1	0	0	0	0	0	0	0	8439	609	21	4		4	KLHL12	1	202880399	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4211659	202880399	46370222	115	166075											
CR1L	1379	broad.mit.edu	37	chr1	207883749	207883749	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attccttgtgggctacccccCaacatcaccaatggatattt	6	13	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207883749	G	G	207883749	1	3	214	0	1	0	0	0	0	0	0	0	3873	609	21	4		4	CR1L	1	207883749	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	5003350	207883749	41366872	116	166076											
HHAT	55733	broad.mit.edu	37	chr1	210536154	210536154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcagccagcccagttttGtttagatttgtgactaacga	8	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210536154	T	T	210536154	1	4	214	0	1	0	0	0	0	0	0	0	7156	1392	48	3		3	HHAT	1	210536154	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2652405	210536154	38714467	117	166077											
PPP2R5A	5525	broad.mit.edu	37	chr1	212526428	212526428	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttggccagaagttgagtctCatataaagtgtcagatgggg	14	5	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212526428	G	G	212526428	1	3	214	0	1	0	0	0	0	0	0	0	12493	841	29	4		4	PPP2R5A	1	212526428	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1990274	212526428	36724193	118	166078											
CENPF	1063	broad.mit.edu	37	chr1	214816456	214816456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttattaagttctgaaaGgcaagagcttgactgcctta	10	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214816456	T	T	214816456	3	4	214	1	0	0	0	0	1	0	0	0	3261	1000	35	2	4817	2	CENPF	1	214816456	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2290028	214816456	34434165	119	166079											
USH2A	7399	broad.mit.edu	37	chr1	215963401	215963401	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagcttttctatcaattacCttcatcatcattccagttga	4	10	5	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215963401	G	G	215963401	3	3	214	1	0	0	0	0	1	0	0	0	17162	695	24	4	5514	4	USH2A	1	215963401	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1146945	215963401	33287220	120	166080											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220335623	220335623	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaatgcctagatagcaagTaaaagtagtaaatagaatgc	9	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220335623	C	C	220335623	1	2	214	0	1	0	0	0	0	0	0	0	13044	1653	57	5		5	RAB3GAP2	1	220335623	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	4372222	220335623	28914998	121	166081											
MARK1	4139	broad.mit.edu	37	chr1	220799633	220799633	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgatgggatggaagaggCcttctataccacagactggg	15	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220799633	A	A	220799633	1	1	214	0	1	0	0	0	0	0	0	0	9404	754	26	3		3	MARK1	1	220799633	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	464010	220799633	28450988	122	166082											
MOSC2	54996	broad.mit.edu	37	chr1	220935310	220935310	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgagggcacagcctagGcagaggtaccaggggatgga	16	7	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220935310	T	T	220935310	1	4	214	0	1	0	0	0	0	0	0	0	9808	1218	42	3		3	MOSC2	1	220935310	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	135677	220935310	28315311	123	166083											
MOSC1	64757	broad.mit.edu	37	chr1	220970054	220970054	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtggataaccagcttcctGaagtcacagccctaccgcct	8	15	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220970054	T	T	220970054	2	4	214	1	0	0	0	0	0	0	0	1	9807	1277	45	3		3	MOSC1	1	220970054	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	34744	220970054	28280567	124	166084											
ACBD3	64746	broad.mit.edu	37	chr1	226349305	226349305	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcccgtcgaagcctttcctCttcttctctcctacgtttct	4	17	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226349305	G	G	226349305	3	3	214	1	0	0	0	0	1	0	0	0	123	922	32	4	951	4	ACBD3	1	226349305	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	5379251	226349305	22901316	125	166085											
PARP1	142	broad.mit.edu	37	chr1	226568667	226568667	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgatgatgatgttaagatcCagtttttcagcgctgtgttc	11	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226568667	G	G	226568667	1	3	214	0	1	0	0	0	0	0	0	0	11548	609	21	4		4	PARP1	1	226568667	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	219362	226568667	22681954	126	166086											
TSNAX	7257	broad.mit.edu	37	chr1	231700291	231700291	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccctcctctgatgcacaGgataagcagtttggtacttg	10	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231700291	A	A	231700291	2	1	214	1	0	0	0	0	0	0	0	1	16756	991	35	4		4	TSNAX	1	231700291	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	5131624	231700291	17550330	127	166087											
TARBP1	6894	broad.mit.edu	37	chr1	234584263	234584263	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccttccacatccacagccaGcaagaccatcagagaaacaa	5	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234584263	C	C	234584263	3	2	214	1	0	0	0	0	1	0	0	0	15674	962	34	4	3021	4	TARBP1	1	234584263	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2883972	234584263	14666358	128	166088											
ZP4	57829	broad.mit.edu	37	chr1	238053401	238053401	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aggttgcctccaacaccacgGagctgcctggaccttttctt	9	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	238053401	C	C	238053401	3	2	214	1	0	0	0	0	1	0	0	0	18347	1174	41	4	1415	4	ZP4	1	238053401	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3469138	238053401	11197220	129	166089											
CHRM3	1131	broad.mit.edu	37	chr1	240072435	240072435	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagatgctgctgctgtgcCagtgtgacaaaaaaaagagg	12	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240072435	A	A	240072435	3	1	214	1	0	0	0	0	1	0	0	0	3409	595	21	2	1686	2	CHRM3	1	240072435	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2019034	240072435	9178186	130	166090											
FMN2	56776	broad.mit.edu	37	chr1	240307675	240307675	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccatgatgtccagctcccGagctaaggccaagaagttgc	10	13	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240307675	A	A	240307675	1	1	214	0	1	0	0	0	0	0	0	0	6008	1073	37	4		4	FMN2	1	240307675	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	235240	240307675	8942946	131	166091											
FMN2	56776	broad.mit.edu	37	chr1	240555900	240555900	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcccagaatagcgttaTaacatgctaagtgtatttca	6	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	240555900	C	C	240555900	1	2	214	0	1	0	0	0	0	0	0	0	6008	1421	49	5		5	FMN2	1	240555900	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	248225	240555900	8694721	132	166092											
RGS7	6000	broad.mit.edu	37	chr1	241100015	241100015	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcgcctccactgttttaTgaaaacaaacaaagaacata	7	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	241100015	C	C	241100015	1	2	214	0	1	0	0	0	0	0	0	0	13419	1479	51	5		5	RGS7	1	241100015	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	544115	241100015	8150606	133	166093											
KMO	8564	broad.mit.edu	37	chr1	241725669	241725669	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaccccttcccacaacCcttgctccatgagcgcgaat	5	17	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	241725669	G	G	241725669	1	3	214	0	1	0	0	0	0	0	0	0	8495	638	22	4		4	KMO	1	241725669	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	625654	241725669	7524952	134	166094											
CEP170	9859	broad.mit.edu	37	chr1	243327605	243327605	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgaagcagagccatgagcTgaggtcatacttttgacctt	10	10	1	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	243327605	C	C	243327605	2	2	214	1	0	0	0	0	0	0	0	1	3280	1567	55	5		5	CEP170	1	243327605	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	1601936	243327605	5923016	135	166095											
HNRNPU	3192	broad.mit.edu	37	chr1	245017937	245017937	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acctgtcatacctctgatttCtaccaaaccagatttagttt	4	11	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	245017937	G	G	245017937	1	3	214	0	1	0	0	0	0	0	0	0	7340	928	32	4		4	HNRNPU	1	245017937	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1690332	245017937	4232684	136	166096											
NLRP3	114548	broad.mit.edu	37	chr1	247588857	247588857	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccgacaccttgatatggtGcagtgtgtcctcccaagctc	11	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247588857	C	C	247588857	2	2	214	1	0	0	0	0	0	0	0	1	10573	1306	46	4		4	NLRP3	1	247588857	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2570920	247588857	1661764	137	166097											
NLRP3	114548	broad.mit.edu	37	chr1	247588913	247588913	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctcatgggtaaggaaactCggcttccaggtgcttcctcc	10	12	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247588913	G	G	247588913	1	3	214	0	1	0	0	0	0	0	0	0	10573	899	31	4		4	NLRP3	1	247588913	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	56	247588913	1661708	138	166098											
OR2M2	391194	broad.mit.edu	37	chr1	248343636	248343636	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgttttcttttggctGttatggcttatgaccgctat	9	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248343636	A	A	248343636	3	1	214	1	0	0	0	0	1	0	0	0	11104	1377	48	4	351	4	OR2M2	1	248343636	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	754723	248343636	906985	139	166099											
OR2T12	127064	broad.mit.edu	37	chr1	248458109	248458109	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgggatttgggtctcaTataggtaaaaatgccagctc	11	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248458109	A	A	248458109	3	1	214	1	0	0	0	0	1	0	0	0	11113	1406	49	5	193	5	OR2T12	1	248458109	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	114473	248458109	792512	140	166100											
OR2T10	127069	broad.mit.edu	37	chr1	248756151	248756151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatatggaggtttctgcaCgctcagcatttttttcaaag	8	7	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248756151	A	A	248756151	3	1	214	1	0	0	0	0	1	0	0	0	11111	536	19	3	22	3	OR2T10	1	248756151	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	298042	248756151	494470	141	166101											
TPO	7173	broad.mit.edu	37	chr2	1480889	1480889	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccggccggccgcgggcaCcgcctgtctgcccttctacc	13	20	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1480889	A	A	1480889	3	1	214	1	0	0	0	0	1	0	0	0	16534	507	18	3	877	3	TPO	2	1480889	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08		1480889	241718484	142	166102											
MYT1L	23040	broad.mit.edu	37	chr2	1926884	1926884	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttctgactcagtcctGgcccggtaggctgcatcctc	9	14	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1926884	A	A	1926884	2	1	214	1	0	0	0	0	0	0	0	1	10201	1335	47	4		4	MYT1L	2	1926884	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	445995	1926884	241272489	143	166103											
TSSC1	7260	broad.mit.edu	37	chr2	3217925	3217925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgcttttacttaccacagCctggctcgagctttcctgta	8	12	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3217925	A	A	3217925	3	1	214	1	0	0	0	0	1	0	0	0	16791	739	26	3	672	3	TSSC1	2	3217925	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1291041	3217925	239981448	144	166104											
GRHL1	29841	broad.mit.edu	37	chr2	10136084	10136090	+	Frame_Shift_Del	DEL	AAGAACC	-	-													taccaagctggcccggatagAagaaccaaagagaggtgtgt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10136090	-	-	10136084	7	5	214	1	0	1	0	1	0	0	0	0	6829	246	9	0	1627	0	GRHL1	2	10136084	Frame_Shift_Del	DEL	AAGAACC	TCGA-75-5126-01A-01D-1753-08	6918159	10136084	233063289	145	166105											
RRM2	6241	broad.mit.edu	37	chr2	10263908	10263908	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actgggaatccctgaaacccGaggagagatattttatatcc	9	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10263908	A	A	10263908	3	1	214	1	0	0	0	0	1	0	0	0	13793	1059	37	4	558	4	RRM2	2	10263908	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	127824	10263908	232935465	146	166106											
RRM2	6241	broad.mit.edu	37	chr2	10264019	10264019	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcattcatttgacgttgacGatctgaggtcgaactagttc	9	8	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10264019	A	A	10264019	1	1	214	0	1	0	0	0	0	0	0	0	13793	1073	37	4		4	RRM2	2	10264019	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	111	10264019	232935354	147	166107											
RRM2	6241	broad.mit.edu	37	chr2	10264847	10264847	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atgtgttttgccactaggtgGagcgatttagccaagaagtt	12	6	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10264847	C	C	10264847	3	2	214	1	0	0	0	0	1	0	0	0	13793	1175	41	4	637	4	RRM2	2	10264847	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	828	10264847	232934526	148	166108											
NOL10	79954	broad.mit.edu	37	chr2	10729165	10729165	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcgctcaggcagtgctacTcacttcatcagtttctgctt	9	12	5	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10729165	A	A	10729165	1	1	214	0	1	0	0	0	0	0	0	0	10615	1566	54	5		5	NOL10	2	10729165	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	464318	10729165	232470208	149	166109											
PDIA6	10130	broad.mit.edu	37	chr2	10933296	10933296	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcgcagagcactcagcgCagcatctacaatggcttcac	10	14	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10933296	A	A	10933296	3	1	214	1	0	0	0	0	1	0	0	0	11766	710	25	3	979	3	PDIA6	2	10933296	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	204131	10933296	232266077	150	166110											
NBAS	51594	broad.mit.edu	37	chr2	15378564	15378564	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaatatactgatacagagtGagcatatagaagttcccatt	8	6	0	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15378564	A	A	15378564	1	1	214	0	1	0	0	0	0	0	0	0	10280	1305	45	4		4	NBAS	2	15378564	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4445268	15378564	227820809	151	166111											
C2orf44	80304	broad.mit.edu	37	chr2	24260771	24260771	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccagtgtgctggtgtggtCtggtgtgctgctgtgtctgg	17	8	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24260771	T	T	24260771	3	4	214	1	0	0	0	0	1	0	0	0	2190	913	32	4	583	4	C2orf44	2	24260771	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	8882207	24260771	218938602	152	166112											
NCOA1	8648	broad.mit.edu	37	chr2	24914295	24914295	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtacatcttttgtatcttcaGagtttgtgctttttcaccat	6	8	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24914295	T	T	24914295	1	4	214	0	1	0	0	0	0	0	0	0	10323	957	33	3		3	NCOA1	2	24914295	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	653524	24914295	218285078	153	166113											
NCOA1	8648	broad.mit.edu	37	chr2	24929407	24929407	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatagaaacaaatgaagatGtttgaataataatgtctttt	6	2	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24929407	T	T	24929407	1	4	214	0	1	0	0	0	0	0	0	0	10323	1392	48	3		3	NCOA1	2	24929407	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	15112	24929407	218269966	154	166114											
HADHA	3030	broad.mit.edu	37	chr2	26416385	26416385	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttctgtaactctttggtctCaggaactgcttagaactttg	8	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26416385	G	G	26416385	1	3	214	0	1	0	0	0	0	0	0	0	7009	841	29	4		4	HADHA	2	26416385	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1486978	26416385	216782988	155	166115											
HADHA	3030	broad.mit.edu	37	chr2	26453225	26453225	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggtgataattatatagttTacaaatcatcaaatgaacaa	6	4	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26453225	A	A	26453225	1	1	214	0	1	0	0	0	0	0	0	0	7009	1769	61	5		5	HADHA	2	26453225	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	36840	26453225	216746148	156	166116											
C2orf39	92749	broad.mit.edu	37	chr2	26673529	26673529	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttaaatatcgagctcacCgtttatcttccagcctccag	5	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26673529	A	A	26673529	3	1	214	1	0	0	0	0	1	0	0	0	2186	652	23	1	1719	1	C2orf39	2	26673529	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	220304	26673529	216525844	157	166117											
C2orf53	339779	broad.mit.edu	37	chr2	27360638	27360638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccaccactccaggggacCcggacccagtgtccctgtac	9	18	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27360638	A	A	27360638	3	1	214	1	0	0	0	0	1	0	0	0	2196	623	22	2	682	2	C2orf53	2	27360638	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	687109	27360638	215838735	158	166118											
IFT172	26160	broad.mit.edu	37	chr2	27693997	27693997	+	Intron	DEL	G	-	-													ggcaggtaacacaattacaaGgggatgtggggttgtctcct							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27693997	-	-	27693997	6	5	214	0	1	1	0	1	0	0	0	0	7627	1015	35	0		0	IFT172	2	27693997	Intron	DEL	G	TCGA-75-5126-01A-01D-1753-08	333359	27693997	215505376	159	166119											
BIRC6	57448	broad.mit.edu	37	chr2	32640306	32640306	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaagatcttttcacagatGaacaatattatgagtaaaag	8	4	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32640306	A	A	32640306	3	1	214	1	0	0	0	0	1	0	0	0	1444	1290	45	4	1985	4	BIRC6	2	32640306	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4946309	32640306	210559067	160	166120											
STRN	6801	broad.mit.edu	37	chr2	37095030	37095030	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagagagatgactttacCattctaagtgtcagtaaaca	8	7	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37095030	A	A	37095030	1	1	214	0	1	0	0	0	0	0	0	0	15447	609	21	2		2	STRN	2	37095030	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4454724	37095030	206104343	161	166121											
STRN	6801	broad.mit.edu	37	chr2	37096801	37096801	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaaagcaagggctcggatGccatcaaagtgacttctcaa	11	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37096801	C	C	37096801	2	2	214	1	0	0	0	0	0	0	0	1	15447	1306	46	4		4	STRN	2	37096801	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1771	37096801	206102572	162	166122											
PRKD3	23683	broad.mit.edu	37	chr2	37494536	37494536	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taattcagattcttaccagcCtctttaataaaccagttttt	3	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37494536	G	G	37494536	1	3	214	0	1	0	0	0	0	0	0	0	12626	696	24	4		4	PRKD3	2	37494536	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	397735	37494536	205704837	163	166123											
SLC8A1	6546	broad.mit.edu	37	chr2	40655828	40655828	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcgtggtcatcatcaaaAatagttacagtggcagtgga	11	8	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40655828	C	C	40655828	3	2	214	1	0	0	0	0	1	0	0	0	14820	10	1	5	1476	5	SLC8A1	2	40655828	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	3161292	40655828	202543545	164	166124											
EML4	27436	broad.mit.edu	37	chr2	42508131	42508131	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcgtatccttctctaccatGacagcaaattcatttgcttt	6	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42508131	A	A	42508131	1	1	214	0	1	0	0	0	0	0	0	0	5141	1305	45	4		4	EML4	2	42508131	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1852303	42508131	200691242	165	166125											
SIX2	10736	broad.mit.edu	37	chr2	45233412	45233412	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacctccgcctggcaccGgcactggcactgcgctgggg	13	18	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45233412	A	A	45233412	3	1	214	1	0	0	0	0	1	0	0	0	14460	1116	39	4	106	4	SIX2	2	45233412	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2725281	45233412	197965961	166	166126											
EPCAM	4072	broad.mit.edu	37	chr2	47601119	47601119	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acctccatgtgctggtgtgtGaacactgctggggtcagaag	14	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47601119	A	A	47601119	2	1	214	1	0	0	0	0	0	0	0	1	5204	1277	45	4		4	EPCAM	2	47601119	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2367707	47601119	195598254	167	166127											
MSH2	4436	broad.mit.edu	37	chr2	47690262	47690262	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttggaaaagaagatgcaGtcaacattaataagtgcagc	10	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47690262	T	T	47690262	3	4	214	1	0	0	0	0	1	0	0	0	9964	1020	36	3	1513	3	MSH2	2	47690262	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	89143	47690262	195509111	168	166128											
CCDC88A	55704	broad.mit.edu	37	chr2	55573254	55573254	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttattaactgcattttaaaTgtgttaaaattctaacacag	4	5	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55573254	C	C	55573254	1	2	214	0	1	0	0	0	0	0	0	0	2891	1479	51	5		5	CCDC88A	2	55573254	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	7882992	55573254	187626119	169	166129											
CCDC85A	114800	broad.mit.edu	37	chr2	56420459	56420459	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagccctgatcacaaacacgGaggaggcagtggaggaagtg	16	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56420459	T	T	56420459	3	4	214	1	0	0	0	0	1	0	0	0	2887	1174	41	3	1130	3	CCDC85A	2	56420459	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	847205	56420459	186778914	170	166130											
FAM161A	84140	broad.mit.edu	37	chr2	62067223	62067223	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccttcagagaccttctccGttcttctttttgcttgacta	5	13	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62067223	A	A	62067223	3	1	214	1	0	0	0	0	1	0	0	0	5518	1144	40	4	1082	4	FAM161A	2	62067223	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5646764	62067223	181132150	171	166131											
PLEK	5341	broad.mit.edu	37	chr2	68607999	68607999	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatttgccaggaaatctaccAggaggtccattcgactgcca	9	11	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68607999	T	T	68607999	3	4	214	1	0	0	0	0	1	0	0	0	12148	179	7	5	353	5	PLEK	2	68607999	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	6540776	68607999	174591374	172	166132											
ARHGAP25	9938	broad.mit.edu	37	chr2	69040404	69040404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagtttcacagagcgttgCttattttcttccagagacac	8	9	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69040404	A	A	69040404	1	1	214	0	1	0	0	0	0	0	0	0	876	812	28	3		3	ARHGAP25	2	69040404	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	432405	69040404	174158969	173	166133											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71357404	71357404	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaggttgagagacgcgcgGcagagggcggggcgggaggc	24	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71357404	T	T	71357404	1	4	214	0	1	0	0	0	0	0	0	0	9819	1218	42	3		3	MPHOSPH10	2	71357404	5'Flank	SNP	G	TCGA-75-5126-01A-01D-1753-08	2317000	71357404	171841969	174	166134											
ZNF638	27332	broad.mit.edu	37	chr2	71595769	71595769	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcatatataattgttctttGagagttatataaatgtctgg	8	3	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71595769	C	C	71595769	1	2	214	0	1	0	0	0	0	0	0	0	18182	1305	45	4		4	ZNF638	2	71595769	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	238365	71595769	171603604	175	166135											
ZNF638	27332	broad.mit.edu	37	chr2	71650945	71650945	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaaaagaaactttcagCcaaggaatttggtctgctta	9	7	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71650945	G	G	71650945	3	3	214	1	0	0	0	0	1	0	0	0	18182	739	26	4	4383	4	ZNF638	2	71650945	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	55176	71650945	171548428	176	166136											
SMYD5	10322	broad.mit.edu	37	chr2	73450336	73450336	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggggtagggtgggactcTggacagatcactgaactgga	17	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73450336	C	C	73450336	1	2	214	0	1	0	0	0	0	0	0	0	14939	1595	55	5		5	SMYD5	2	73450336	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1799391	73450336	169749037	177	166137											
C2orf78	388960	broad.mit.edu	37	chr2	74043355	74043355	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaaaaccgccagccattcCcagctctcaaaccatggctg	6	18	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74043355	A	A	74043355	3	1	214	1	0	0	0	0	1	0	0	0	2217	623	22	2	2015	2	C2orf78	2	74043355	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	593019	74043355	169156018	178	166138											
C2orf65	130951	broad.mit.edu	37	chr2	74808759	74808759	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagagtcctgatcccagaTaagaataatcatagcctaaa	6	9	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74808759	C	C	74808759	1	2	214	0	1	0	0	0	0	0	0	0	2206	1421	49	5		5	C2orf65	2	74808759	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	765404	74808759	168390614	179	166139											
REG1A	5967	broad.mit.edu	37	chr2	79350089	79350089	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaagcacaggtgagaggcaGagaatccatccacctgtttc	10	11	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79350089	T	T	79350089	1	4	214	0	1	0	0	0	0	0	0	0	13318	957	33	3		3	REG1A	2	79350089	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4541330	79350089	163849284	180	166140											
DNAH6	1768	broad.mit.edu	37	chr2	84775610	84775610	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcattaaaaattaaaccccAgaaagtgatgactatgttaa	6	6	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84775610	G	G	84775610	1	3	214	0	1	0	0	0	0	0	0	0	4645	203	7	5		5	DNAH6	2	84775610	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	5425521	84775610	158423763	181	166141											
NCAPH	23397	broad.mit.edu	37	chr2	97031791	97031791	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaacttggtagctgagcctCagaaggtacggatgaaacag	12	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97031791	T	T	97031791	4	4	214	1	0	0	0	0	0	1	0	0	10304	827	29	4	1930	4	NCAPH	2	97031791	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	12256181	97031791	146167582	182	166142											
TMEM131	23505	broad.mit.edu	37	chr2	98525084	98525084	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaatcccccagaaggaaCcgaaagtatgttaattatct	8	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98525084	A	A	98525084	1	1	214	0	1	0	0	0	0	0	0	0	16167	522	18	3		3	TMEM131	2	98525084	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1493293	98525084	144674289	183	166143											
VWA3B	200403	broad.mit.edu	37	chr2	98709612	98709612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagctgcagaggcaagaGggatggattaacaccaaaac	12	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98709612	T	T	98709612	3	4	214	1	0	0	0	0	1	0	0	0	17368	991	35	2	59	2	VWA3B	2	98709612	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	184528	98709612	144489761	184	166144											
LONRF2	164832	broad.mit.edu	37	chr2	100915784	100915784	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctttgaagtgagagatctGaatgcgaaaaaatttaaaac	8	5	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100915784	C	C	100915784	1	2	214	0	1	0	0	0	0	0	0	0	8982	1305	45	4		4	LONRF2	2	100915784	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2206172	100915784	142283589	185	166145											
SLC9A4	389015	broad.mit.edu	37	chr2	103090357	103090357	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcatctaacgcttggtttGctgctgccagctcagagcca	10	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103090357	T	T	103090357	3	4	214	1	0	0	0	0	1	0	0	0	14830	1319	46	3	141	3	SLC9A4	2	103090357	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2174573	103090357	140109016	186	166146											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460128	107460128	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatgttcaaacccatcttgGgactgggcccatttctgcag	9	11	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107460128	T	T	107460128	2	4	214	1	0	0	0	0	0	0	0	1	15340	1219	43	2		2	ST6GAL2	2	107460128	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	4369771	107460128	135739245	187	166147											
RGPD4	285190	broad.mit.edu	37	chr2	108496696	108496696	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatctttatattagattccTgatggtgagaaatattgcct	8	5	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108496696	G	G	108496696	1	3	214	0	1	0	0	0	0	0	0	0	13396	1595	55	5		5	RGPD4	2	108496696	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1036568	108496696	134702677	188	166148											
RANBP2	5903	broad.mit.edu	37	chr2	109384690	109384690	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaactagttcagtagcccaGagtggatctgaaagcaaagt	11	7	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109384690	T	T	109384690	3	4	214	1	0	0	0	0	1	0	0	0	13136	933	33	3	7773	3	RANBP2	2	109384690	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	887994	109384690	133814683	189	166149											
ZC3H6	376940	broad.mit.edu	37	chr2	113060967	113060967	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgataaaacatagataGcataaaatgtaccattttaa	5	4	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113060967	C	C	113060967	1	2	214	0	1	0	0	0	0	0	0	0	17697	986	34	4		4	ZC3H6	2	113060967	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	3676277	113060967	130138406	190	166150											
POLR1B	84172	broad.mit.edu	37	chr2	113305083	113305083	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccatcatggtgaaatccaAgctttgcaacttacgtaacc	6	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113305083	T	T	113305083	3	4	214	1	0	0	0	0	1	0	0	0	12305	72	3	5	441	5	POLR1B	2	113305083	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	244116	113305083	129894290	191	166151											
TFCP2L1	29842	broad.mit.edu	37	chr2	121995289	121995289	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcgaagctgatgggagcaGgtgctgtgagcagaggggag	20	5	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121995289	T	T	121995289	3	4	214	1	0	0	0	0	1	0	0	0	15919	991	35	2	550	2	TFCP2L1	2	121995289	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	8690206	121995289	121204084	192	166152											
MYO7B	4648	broad.mit.edu	37	chr2	128393797	128393797	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagagcatccttctagcCtatgacaagcataaggacaa	7	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128393797	A	A	128393797	2	1	214	1	0	0	0	0	0	0	0	1	10177	668	24	2		2	MYO7B	2	128393797	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	6398508	128393797	114805576	193	166153											
POTEF	728378	broad.mit.edu	37	chr2	130832523	130832523	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacggccagaggtgtacaggGacagcacagcctggatggcc	15	11	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130832523	T	T	130832523	3	4	214	1	0	0	0	0	1	0	0	0	12361	1174	41	3	709	3	POTEF	2	130832523	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2438726	130832523	112366850	194	166154											
GPR148	344561	broad.mit.edu	37	chr2	131487629	131487629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcacacatggctcctggCagctaacagtgaggtactca	10	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131487629	A	A	131487629	3	1	214	1	0	0	0	0	1	0	0	0	6718	710	25	3	907	3	GPR148	2	131487629	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	655106	131487629	111711744	195	166155											
TUBA3D	113457	broad.mit.edu	37	chr2	132237812	132237812	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtctccacagccgtggtGgagccctacaactccatcct	9	16	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132237812	A	A	132237812	2	1	214	1	0	0	0	0	0	0	0	1	16873	1335	47	4		4	TUBA3D	2	132237812	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	750183	132237812	110961561	196	166156											
GPR39	2863	broad.mit.edu	37	chr2	133246450	133246450	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctccctgcaagggaggGtgggaatactgtgattgccc	13	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133246450	T	T	133246450	1	4	214	0	1	0	0	0	0	0	0	0	6758	1276	44	3		3	GPR39	2	133246450	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1008638	133246450	109952923	197	166157											
NCKAP5	344148	broad.mit.edu	37	chr2	133542855	133542855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctcccagccaaacagaCtgtcggaaacactgtgggtt	10	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133542855	A	A	133542855	3	1	214	1	0	0	0	0	1	0	0	0	10318	565	20	3	4228	3	NCKAP5	2	133542855	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	296405	133542855	109656518	198	166158											
YSK4	80122	broad.mit.edu	37	chr2	135744683	135744683	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcttttgaaacctgggcaAttgccaaggcctggggtcca	11	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135744683	G	G	135744683	2	3	214	1	0	0	0	0	0	0	0	1	17622	98	4	5		5	YSK4	2	135744683	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	2201828	135744683	107454690	199	166159											
LCT	3938	broad.mit.edu	37	chr2	136555643	136555643	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctcctgtcacggatccgCgtcttcatcacctcattgta	7	14	5	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136555643	A	A	136555643	2	1	214	1	0	0	0	0	0	0	0	1	8765	755	27	3		3	LCT	2	136555643	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	810960	136555643	106643730	200	166160											
LRP1B	53353	broad.mit.edu	37	chr2	141027886	141027886	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtagccatcacataactgaCagctagaggcaatctttcca	7	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141027886	G	G	141027886	3	3	214	1	0	0	0	0	1	0	0	0	9042	478	17	4	651	4	LRP1B	2	141027886	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4472243	141027886	102171487	201	166161											
LRP1B	53353	broad.mit.edu	37	chr2	141108599	141108599	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaatgtagagaacttgatCttcagagcctggagattatt	10	6	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141108599	G	G	141108599	3	3	214	1	0	0	0	0	1	0	0	0	9042	913	32	4	2200	4	LRP1B	2	141108599	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	80713	141108599	102090774	202	166162											
LRP1B	53353	broad.mit.edu	37	chr2	141474375	141474375	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgtctgtccagtagatGgtatcattttctatggataa	8	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141474375	T	T	141474375	2	4	214	1	0	0	0	0	0	0	0	1	9042	1335	47	2		2	LRP1B	2	141474375	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	365776	141474375	101724998	203	166163											
ARHGAP15	55843	broad.mit.edu	37	chr2	143959611	143959611	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctacttaattcacatgcttGaataacactgaattggttat	5	7	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	143959611	C	C	143959611	1	2	214	0	1	0	0	0	0	0	0	0	868	1305	45	4		4	ARHGAP15	2	143959611	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2485236	143959611	99239762	204	166164											
MBD5	55777	broad.mit.edu	37	chr2	149247498	149247498	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaaaaaacagtgggacgggGagcaaagccccagaggggag	16	9	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149247498	T	T	149247498	4	4	214	1	0	0	0	0	0	1	0	0	9440	1175	41	3	3624	3	MBD5	2	149247498	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5287887	149247498	93951875	205	166165											
SCN2A	6326	broad.mit.edu	37	chr2	166179847	166179847	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttcgtgccgcacagacatgGagaacggcgccacagcaatg	13	12	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166179847	A	A	166179847	3	1	214	1	0	0	0	0	1	0	0	0	14029	1174	41	4	1991	4	SCN2A	2	166179847	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	16932349	166179847	77019526	206	166166											
SCN2A	6326	broad.mit.edu	37	chr2	166201146	166201146	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaattctgtgggggctctaGgaaacctcaccttggtattg	12	9	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166201146	C	C	166201146	3	2	214	1	0	0	0	0	1	0	0	0	14029	1001	35	4	2798	4	SCN2A	2	166201146	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	21299	166201146	76998227	207	166167											
CSRNP3	80034	broad.mit.edu	37	chr2	166535349	166535349	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgaactggagaaaaaccgaGagcagcaaatccccacgctg	10	11	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166535349	T	T	166535349	4	4	214	1	0	0	0	0	0	1	0	0	3999	943	33	3	858	3	CSRNP3	2	166535349	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	334203	166535349	76664024	208	166168											
SCN1A	6323	broad.mit.edu	37	chr2	166900551	166900551	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatagggagccacggatgctCaacaaagactagaagtttga	11	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166900551	T	T	166900551	2	4	214	1	0	0	0	0	0	0	0	1	14027	825	29	4		4	SCN1A	2	166900551	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	365202	166900551	76298822	209	166169											
XIRP2	129446	broad.mit.edu	37	chr2	168102966	168102966	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaaaaggagatattaaCatgactatctattgtcttct	7	5	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168102966	A	A	168102966	3	1	214	1	0	0	0	0	1	0	0	0	17557	477	17	3	5094	3	XIRP2	2	168102966	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1202415	168102966	75096407	210	166170											
XIRP2	129446	broad.mit.edu	37	chr2	168108197	168108197	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagagtcaaattgttgagtCgaagatgaaaacctcttcat	9	6	3	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168108197	A	A	168108197	4	1	214	1	0	0	0	0	0	1	0	0	17557	893	31	3	10325	3	XIRP2	2	168108197	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	5231	168108197	75091176	211	166171											
STK39	27347	broad.mit.edu	37	chr2	168920185	168920185	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccatttctttctggaaatttCaaaactagatctttacacac	3	10	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168920185	A	A	168920185	1	1	214	0	1	0	0	0	0	0	0	0	15423	841	29	3		3	STK39	2	168920185	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	811988	168920185	74279188	212	166172											
LRP2	4036	broad.mit.edu	37	chr2	170060866	170060866	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccaatgcatgcgcctcatCattgtttacacaagctgcaa	7	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170060866	A	A	170060866	1	1	214	0	1	0	0	0	0	0	0	0	9043	841	29	3		3	LRP2	2	170060866	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1140681	170060866	73138507	213	166173											
TTN	7273	broad.mit.edu	37	chr2	179395922	179395931	+	Frame_Shift_Del	DEL	GACGGTCATG	-	-													cttgcagactcgccctcgtaGacggtcatggaccgtggctt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	179395931	-	-	179395922	7	5	214	1	0	1	0	1	0	0	0	0	16861	929	33	0	2579	0	TTN	2	179395922	Frame_Shift_Del	DEL	GACGGTCATG	TCGA-75-5126-01A-01D-1753-08	9335056	179395922	63803451	214	166174											
TTN	7273	broad.mit.edu	37	chr2	179404336	179404336	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaccatcatcagcaggaGgtctccagctgaccctcaca	7	17	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179404336	T	T	179404336	3	4	214	1	0	0	0	0	1	0	0	0	16861	1000	35	2	9567	2	TTN	2	179404336	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	8414	179404336	63795037	215	166175											
TTN	7273	broad.mit.edu	37	chr2	179422925	179422925	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctctaacatatacagtGtgacttgggaaattcttcat	7	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179422925	T	T	179422925	3	4	214	1	0	0	0	0	1	0	0	0	16861	1368	48	3	20963	3	TTN	2	179422925	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	18589	179422925	63776448	216	166176											
TTN	7273	broad.mit.edu	37	chr2	179448526	179448526	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaggaagtttgcaagcttCtacgaaatagccaataattt	7	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179448526	T	T	179448526	3	4	214	1	0	0	0	0	1	0	0	0	16861	922	32	4	42800	4	TTN	2	179448526	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	25601	179448526	63750847	217	166177											
TTN	7273	broad.mit.edu	37	chr2	179459287	179459287	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttaataatttctgacccacCatcatacttaggaggattcc	6	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179459287	T	T	179459287	3	4	214	1	0	0	0	0	1	0	0	0	16861	594	21	4	50313	4	TTN	2	179459287	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	10761	179459287	63740086	218	166178											
ITGA4	3676	broad.mit.edu	37	chr2	182339987	182339987	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgatttacgaacagaactGagtaaaagaatagctccgtg	9	8	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182339987	T	T	182339987	2	4	214	1	0	0	0	0	0	0	0	1	7948	1277	45	3		3	ITGA4	2	182339987	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2880700	182339987	60859386	219	166179											
ZNF804A	91752	broad.mit.edu	37	chr2	185801020	185801020	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actcaagagataaaagaagtCtctagtgaaaaagatgcatt	8	5	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801020	A	A	185801020	2	1	214	1	0	0	0	0	0	0	0	1	18299	900	32	3		3	ZNF804A	2	185801020	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	3461033	185801020	57398353	220	166180											
ZNF804A	91752	broad.mit.edu	37	chr2	185803016	185803016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaactttagacagtcaCagcctaaatcctatctttgc	6	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185803016	A	A	185803016	3	1	214	1	0	0	0	0	1	0	0	0	18299	479	17	3	2907	3	ZNF804A	2	185803016	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1996	185803016	57396357	221	166181											
FAM171B	165215	broad.mit.edu	37	chr2	187605101	187605101	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtgctgataaaagtacccTacaaattaggacttagttta	7	7	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187605101	A	A	187605101	3	1	214	1	0	0	0	0	1	0	0	0	5536	1522	53	5	391	5	FAM171B	2	187605101	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	1802085	187605101	55594272	222	166182											
COL5A2	1290	broad.mit.edu	37	chr2	189921588	189921588	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgccattattctccaactCctgactaccaaggaaacatg	5	13	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189921588	A	A	189921588	1	1	214	0	1	0	0	0	0	0	0	0	3729	870	30	3		3	COL5A2	2	189921588	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2316487	189921588	53277785	223	166183											
PMS1	5378	broad.mit.edu	37	chr2	190719864	190719864	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaactgaagtaagtttcCagagcttgcatgtgacttga	10	6	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190719864	T	T	190719864	1	4	214	0	1	0	0	0	0	0	0	0	12237	609	21	4		4	PMS1	2	190719864	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	798276	190719864	52479509	224	166184											
DNAH7	56171	broad.mit.edu	37	chr2	196759992	196759992	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacattttatatatttatAttaaatacaaatattttgta	1	2	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196759992	G	G	196759992	1	3	214	0	1	0	0	0	0	0	0	0	4646	464	16	5		5	DNAH7	2	196759992	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	6040128	196759992	46439381	225	166185											
STK17B	9262	broad.mit.edu	37	chr2	197008376	197008376	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctactattttaatgtccccgAgagggtatatgctgctcagt	9	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197008376	T	T	197008376	3	4	214	1	0	0	0	0	1	0	0	0	15409	304	11	5	619	5	STK17B	2	197008376	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	248384	197008376	46190997	226	166186											
ANKRD44	91526	broad.mit.edu	37	chr2	197872649	197872649	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagcatcagtggtgttcTaggcagagagataaagcagg	14	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197872649	A	A	197872649	5	1	214	1	0	0	0	0	0	0	1	0	672	1536	53	5	851	5	ANKRD44	2	197872649	Splice_Site	SNP	T	TCGA-75-5126-01A-01D-1753-08	864273	197872649	45326724	227	166187											
PLCL1	5334	broad.mit.edu	37	chr2	198965951	198965951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctctctgtatgtcgtcttcCcaatgagccagttcaaggat	8	11	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198965951	A	A	198965951	1	1	214	0	1	0	0	0	0	0	0	0	12134	638	22	2		2	PLCL1	2	198965951	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1093302	198965951	44233422	228	166188											
SATB2	23314	broad.mit.edu	37	chr2	200137156	200137156	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgctggttctggaagaacttGatgatggtgtgtttggggag	17	4	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	200137156	C	C	200137156	3	2	214	1	0	0	0	0	1	0	0	0	13966	1280	45	4	225	4	SATB2	2	200137156	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1171205	200137156	43062217	229	166189											
C2orf47	79568	broad.mit.edu	37	chr2	200824636	200824636	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catagtcaacttgaaatgatCcataattgtccagataagct	6	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200824636	A	A	200824636	1	1	214	0	1	0	0	0	0	0	0	0	2191	870	30	3		3	C2orf47	2	200824636	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	687480	200824636	42374737	230	166190											
FAM126B	285172	broad.mit.edu	37	chr2	201853122	201853122	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caggagcatcaaatggtaatGagtttttcatggcattggca	11	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201853122	C	C	201853122	4	2	214	1	0	0	0	0	0	1	0	0	5476	1294	45	4	746	4	FAM126B	2	201853122	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1028486	201853122	41346251	231	166191											
ALS2	57679	broad.mit.edu	37	chr2	202593401	202593401	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tataatacaagtcaaacaatCaaaattattttaacatgtaa	2	5	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202593401	A	A	202593401	1	1	214	0	1	0	0	0	0	0	0	0	550	841	29	3		3	ALS2	2	202593401	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	740279	202593401	40605972	232	166192											
CDK15	65061	broad.mit.edu	37	chr2	202700488	202700488	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctgagctggacatatggTaagagtggtgccgagaaaat	13	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202700488	A	A	202700488	5	1	214	1	0	0	0	0	0	0	1	0	3161	1652	57	5	726	5	CDK15	2	202700488	Splice_Site	SNP	T	TCGA-75-5126-01A-01D-1753-08	107087	202700488	40498885	233	166193											
BMPR2	659	broad.mit.edu	37	chr2	203332383	203332383	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgtcaactttactgagaAttttccacctcctgacacaa	4	11	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203332383	G	G	203332383	3	3	214	1	0	0	0	0	1	0	0	0	1477	101	4	5	399	5	BMPR2	2	203332383	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	631895	203332383	39866990	234	166194											
CRYGB	1419	broad.mit.edu	37	chr2	209007476	209007476	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgcctccccctgtagttGggcatctcatagaggatcca	9	13	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209007476	A	A	209007476	2	1	214	1	0	0	0	0	0	0	0	1	3947	1335	47	4		4	CRYGB	2	209007476	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	5675093	209007476	34191897	235	166195											
PTH2R	5746	broad.mit.edu	37	chr2	209308240	209308240	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaattccattgaggcaaCttctgtggacaaatcacaat	6	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209308240	A	A	209308240	3	1	214	1	0	0	0	0	1	0	0	0	12866	565	20	3	699	3	PTH2R	2	209308240	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	300764	209308240	33891133	236	166196											
MAP2	4133	broad.mit.edu	37	chr2	210558419	210558419	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttggagcaagcagttacaGattcagccatgacctctaaa	9	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210558419	A	A	210558419	3	1	214	1	0	0	0	0	1	0	0	0	9327	942	33	4	1539	4	MAP2	2	210558419	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1250179	210558419	32640954	237	166197											
CPS1	1373	broad.mit.edu	37	chr2	211464141	211464141	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacccaaacattgcatcaGtccagaccaatgaggtgggc	10	11	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211464141	T	T	211464141	3	4	214	1	0	0	0	0	1	0	0	0	3855	1029	36	3	1481	3	CPS1	2	211464141	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	905722	211464141	31735232	238	166198											
SPAG16	79582	broad.mit.edu	37	chr2	214215336	214215336	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttactgaaggagaaaatgctGacctccttggaaagagacaa	10	7	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	214215336	T	T	214215336	2	4	214	1	0	0	0	0	0	0	0	1	15094	1277	45	3		3	SPAG16	2	214215336	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2751195	214215336	28984037	239	166199											
VWC2L	402117	broad.mit.edu	37	chr2	215279359	215279359	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacttttcataccacgtgCttagtacattgctacattaa	4	10	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215279359	A	A	215279359	1	1	214	0	1	0	0	0	0	0	0	0	17371	812	28	3		3	VWC2L	2	215279359	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1064023	215279359	27920014	240	166200											
BARD1	580	broad.mit.edu	37	chr2	215595194	215595194	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaatttcatacttttcttCctgttcacatacttttcttc	3	10	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215595194	A	A	215595194	4	1	214	1	0	0	0	0	0	1	0	0	1317	864	30	3	399	3	BARD1	2	215595194	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	315835	215595194	27604179	241	166201											
VIL1	7429	broad.mit.edu	37	chr2	219288946	219288946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgggccctcctcccaggCctaggggtcctggtggtcca	13	16	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219288946	A	A	219288946	1	1	214	0	1	0	0	0	0	0	0	0	17291	754	26	3		3	VIL1	2	219288946	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3693752	219288946	23910427	242	166202											
RNF25	64320	broad.mit.edu	37	chr2	219528862	219528862	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagctgccaggccccttctCttgtggaggaccttcaactc	9	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219528862	T	T	219528862	3	4	214	1	0	0	0	0	1	0	0	0	13596	922	32	4	185	4	RNF25	2	219528862	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	239916	219528862	23670511	243	166203											
WNT10A	80326	broad.mit.edu	37	chr2	219746998	219746998	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagatggaggtgtgtgtgCgtcaccctgatgtggctgcc	17	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219746998	T	T	219746998	3	4	214	1	0	0	0	0	1	0	0	0	17509	768	27	4	235	4	WNT10A	2	219746998	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	218136	219746998	23452375	244	166204											
NHEJ1	79840	broad.mit.edu	37	chr2	219942155	219942155	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accaggaagatattagcattCaccaagcattctgataaagg	8	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219942155	A	A	219942155	1	1	214	0	1	0	0	0	0	0	0	0	10497	841	29	3		3	NHEJ1	2	219942155	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	195157	219942155	23257218	245	166205											
SPEG	10290	broad.mit.edu	37	chr2	220338272	220338272	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atgctggacaaaccagacatCgtgtatgtggtggagggaca	14	7	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	220338272	G	G	220338272	3	3	214	1	0	0	0	0	1	0	0	0	15154	874	31	4	4272	4	SPEG	2	220338272	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	396117	220338272	22861101	246	166206											
PAX3	5077	broad.mit.edu	37	chr2	223160401	223160401	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagaacaggcgggcaggcGttggtacccggtaccctggg	17	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223160401	T	T	223160401	1	4	214	0	1	0	0	0	0	0	0	0	11574	1160	40	3		3	PAX3	2	223160401	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2822129	223160401	20038972	247	166207											
WDFY1	57590	broad.mit.edu	37	chr2	224763777	224763777	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacgaaagcatactgagtgtCaaagtcatatctgaggagaa	10	6	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224763777	A	A	224763777	3	1	214	1	0	0	0	0	1	0	0	0	17395	826	29	3	764	3	WDFY1	2	224763777	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1603376	224763777	18435596	248	166208											
KIAA1486	57624	broad.mit.edu	37	chr2	226446722	226446722	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcctcccaaaccgaagCgaaatccgaacactcagctg	6	16	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	226446722	A	A	226446722	2	1	214	1	0	0	0	0	0	0	0	1	8307	760	27	3		3	KIAA1486	2	226446722	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1682945	226446722	16752651	249	166209											
TRIP12	9320	broad.mit.edu	37	chr2	230661452	230661452	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgatgaaacatctgactctGagactatgctacggatttct	8	8	3	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	230661452	C	C	230661452	4	2	214	1	0	0	0	0	0	1	0	0	16681	1294	45	4	2604	4	TRIP12	2	230661452	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4214730	230661452	12537921	250	166210											
TRIP12	9320	broad.mit.edu	37	chr2	230661474	230661475	+	Frame_Shift_Ins	INS	-	A	A													actatgctacggatttctacINSaaggcactcagctccaccat							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230661475	A	A	230661474	7	5	214	1	0	1	1	0	0	0	0	0	16681	478	17	0	2626	0	TRIP12	2	230661474	Frame_Shift_Ins	INS	-	TCGA-75-5126-01A-01D-1753-08	22	230661474	12537899	251	166211											
ALPPL2	251	broad.mit.edu	37	chr2	233272933	233272933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgaggaggggacacggggCcagccaggcccccaaatcca	14	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233272933	A	A	233272933	1	1	214	0	1	0	0	0	0	0	0	0	549	754	26	3		3	ALPPL2	2	233272933	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2611459	233272933	9926440	252	166212											
SAG	6295	broad.mit.edu	37	chr2	234247425	234247425	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccggcaccaaccctcgGgctgctctgtcctggtctta	10	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234247425	T	T	234247425	1	4	214	0	1	0	0	0	0	0	0	0	13919	1247	43	2		2	SAG	2	234247425	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	974492	234247425	8951948	253	166213											
TRPM8	79054	broad.mit.edu	37	chr2	234873354	234873354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaacgacatcaatgctgCtggggagtccgaggagctgg	16	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234873354	A	A	234873354	3	1	214	1	0	0	0	0	1	0	0	0	16717	797	28	3	1882	3	TRPM8	2	234873354	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	625929	234873354	8326019	254	166214											
TRPM8	79054	broad.mit.edu	37	chr2	234878914	234878914	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgtggcgttcttcacctcCcccttcgtggtcttctcctg	8	15	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234878914	A	A	234878914	2	1	214	1	0	0	0	0	0	0	0	1	16717	610	22	2		2	TRPM8	2	234878914	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	5560	234878914	8320459	255	166215											
AGAP1	116987	broad.mit.edu	37	chr2	236957737	236957737	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtttgaacttgggagccctCatgtgcatcgaatgctcagg	12	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236957737	T	T	236957737	2	4	214	1	0	0	0	0	0	0	0	1	366	813	29	4		4	AGAP1	2	236957737	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	2078823	236957737	6241636	256	166216											
IQCA1	79781	broad.mit.edu	37	chr2	237272522	237272522	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggttggctcccgtttcGgtgcagatggcatggaccag	15	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237272522	A	A	237272522	2	1	214	1	0	0	0	0	0	0	0	1	7872	1103	39	4		4	IQCA1	2	237272522	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	314785	237272522	5926851	257	166217											
SCLY	51540	broad.mit.edu	37	chr2	238990303	238990303	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggaacgcagttttgagaGgaatcaatttgtgcagctca	12	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238990303	T	T	238990303	1	4	214	0	1	0	0	0	0	0	0	0	14020	1015	35	2		2	SCLY	2	238990303	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1717781	238990303	4209070	258	166218											
HDAC4	9759	broad.mit.edu	37	chr2	240066124	240066124	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaacctggtcccctgggccTggcacttccagcgccatggg	12	16	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240066124	A	A	240066124	1	1	214	0	1	0	0	0	0	0	0	0	7076	1595	55	5		5	HDAC4	2	240066124	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1075821	240066124	3133249	259	166219											
ANKMY1	51281	broad.mit.edu	37	chr2	241496731	241496731	+	Intron	DEL	G	-	-													gacttcgtcctctaagctaaGggaggcatgggccccttcca							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	241496731	-	-	241496731	6	5	214	0	1	1	0	1	0	0	0	0	634	1000	35	0		0	ANKMY1	2	241496731	Intron	DEL	G	TCGA-75-5126-01A-01D-1753-08	1430607	241496731	1702642	260	166220											
AGXT	189	broad.mit.edu	37	chr2	241817581	241817581	+	Intron	SNP	C	A	A													ggggaaggtgagagggagcgCctcgagggccttttgcagaa							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241817581	A	A	241817581	1	1	214	0	1	0	0	0	0	0	0	0	404	754	26	3		3	AGXT	2	241817581	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	320850	241817581	1381792	261	166221	697	2									
AGXT	189	broad.mit.edu	37	chr2	241817591	241817591	+	Intron	SNP	C	A	A													agagggagcgcctcgagggcCttttgcagaaaccaaacccg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241817591	A	A	241817591	1	1	214	0	1	0	0	0	0	0	0	0	404	696	24	2		2	AGXT	2	241817591	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	10	241817591	1381782	262	166222	697	2									
CNTN6	27255	broad.mit.edu	37	chr3	1262497	1262497	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacccttcgcctcattataGgtaaaatcctacctgtgggc	7	12	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1262497	A	A	1262497	3	1	214	1	0	0	0	0	1	0	0	0	3677	1014	35	4	188	4	CNTN6	3	1262497	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08		1262497	196759933	263	166223											
CRBN	51185	broad.mit.edu	37	chr3	3209248	3209248	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaatcatgaaagttgtgtttCtttcttaaaacaggaaaaaa	7	4	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3209248	G	G	3209248	1	3	214	0	1	0	0	0	0	0	0	0	3883	928	32	4		4	CRBN	3	3209248	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1946751	3209248	194813182	264	166224											
SUMF1	285362	broad.mit.edu	37	chr3	4490806	4490806	+	Intron	DEL	C	-	-													aaggtgtcctggtccatgggCctattatttggggtcaatcc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4490806	-	-	4490806	6	5	214	0	1	1	0	1	0	0	0	0	15503	754	26	0		0	SUMF1	3	4490806	Intron	DEL	C	TCGA-75-5126-01A-01D-1753-08	1281558	4490806	193531624	265	166225											
GRM7	2917	broad.mit.edu	37	chr3	7188115	7188115	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctgacggtgcactctcaCgtggtgctttcttgtctttg	10	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7188115	T	T	7188115	1	4	214	0	1	0	0	0	0	0	0	0	6868	551	19	4		4	GRM7	3	7188115	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2697309	7188115	190834315	266	166226											
GRM7	2917	broad.mit.edu	37	chr3	7340467	7340467	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caaacagctcctggacacccCcaactccagggccgtcgtga	9	17	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7340467	G	G	7340467	3	3	214	1	0	0	0	0	1	0	0	0	6868	623	22	4	843	4	GRM7	3	7340467	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	152352	7340467	190681963	267	166227											
CIDEC	63924	broad.mit.edu	37	chr3	10030086	10030086	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatcaagaaagcagcggtcaGaaccgtattattctctttga	8	8	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10030086	A	A	10030086	1	1	214	0	1	0	0	0	0	0	0	0	3458	957	33	4		4	CIDEC	3	10030086	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2689619	10030086	187992344	268	166228											
FANCD2	2177	broad.mit.edu	37	chr3	10105580	10105580	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatccaacatgaaaagctGgatccaaaagccctggtaaa	8	10	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10105580	T	T	10105580	2	4	214	1	0	0	0	0	0	0	0	1	5722	1335	47	2		2	FANCD2	3	10105580	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	75494	10105580	187916850	269	166229											
TATDN2	9797	broad.mit.edu	37	chr3	10301805	10301806	+	Intron	INS	-	T	T													gaacagccctttcaattctgINSttttttttttcccaggttga							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10301806	T	T	10301805	6	5	214	0	1	1	1	0	0	0	0	0	15711	1392	48	0		0	TATDN2	3	10301805	Intron	INS	-	TCGA-75-5126-01A-01D-1753-08	196225	10301805	187720625	270	166230											
ATP2B2	491	broad.mit.edu	37	chr3	10370725	10370725	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccggaattcaggatgagCcatgaagttatggatggagg	15	5	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10370725	T	T	10370725	3	4	214	1	0	0	0	0	1	0	0	0	1144	739	26	4	230	4	ATP2B2	3	10370725	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	68920	10370725	187651705	271	166231											
ATP2B2	491	broad.mit.edu	37	chr3	10413448	10413448	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagtacctctgtaccatccCatggatgttgctccaggtgg	10	13	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10413448	G	G	10413448	1	3	214	0	1	0	0	0	0	0	0	0	1144	609	21	4		4	ATP2B2	3	10413448	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	42723	10413448	187608982	272	166232											
ATP2B2	491	broad.mit.edu	37	chr3	10430011	10430011	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccagcccccaggagggtaAagatgatgccagtctgagag	13	11	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10430011	T	T	10430011	3	4	214	1	0	0	0	0	1	0	0	0	1144	14	1	5	2946	5	ATP2B2	3	10430011	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	16563	10430011	187592419	273	166233											
SLC6A11	6538	broad.mit.edu	37	chr3	10885924	10885924	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcctggccatctctgacGggatcgagcacatcgggaac	14	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10885924	A	A	10885924	3	1	214	1	0	0	0	0	1	0	0	0	14788	1116	39	4	667	4	SLC6A11	3	10885924	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	455913	10885924	187136506	274	166234											
SYN2	6854	broad.mit.edu	37	chr3	12112728	12112728	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaagatcaagatcatcgTgcccccagagcgcaagtact	9	12	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12112728	G	G	12112728	1	3	214	0	1	0	0	0	0	0	0	0	15560	1711	59	5		5	SYN2	3	12112728	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1226804	12112728	185909702	275	166235											
CAND2	23066	broad.mit.edu	37	chr3	12845176	12845176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagggggccctaccttgtGtgggagcatcctggggaccg	18	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12845176	T	T	12845176	1	4	214	0	1	0	0	0	0	0	0	0	2642	1392	48	3		3	CAND2	3	12845176	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	732448	12845176	185177254	276	166236											
CAND2	23066	broad.mit.edu	37	chr3	12858893	12858893	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccccaagaggcggcaaGcacagccagtcgcctggtct	12	15	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12858893	A	A	12858893	3	1	214	1	0	0	0	0	1	0	0	0	2642	971	34	4	2500	4	CAND2	3	12858893	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	13717	12858893	185163537	277	166237											
FGD5	152273	broad.mit.edu	37	chr3	14862391	14862391	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaccaccttccgtccagcGgcacctccacgccttcttcc	6	20	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14862391	T	T	14862391	3	4	214	1	0	0	0	0	1	0	0	0	5893	1116	39	1	1815	1	FGD5	3	14862391	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2003498	14862391	183160039	278	166238											
HACL1	26061	broad.mit.edu	37	chr3	15631042	15631042	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaccaaaatcttaaagttgGatacctgaggaaactcctgg	8	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15631042	C	C	15631042	1	2	214	0	1	0	0	0	0	0	0	0	7007	1189	41	4		4	HACL1	3	15631042	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	768651	15631042	182391388	279	166239											
RAB5A	5868	broad.mit.edu	37	chr3	20016990	20016990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagttgtacatacttacggGgtacagtgtgacattttgat	10	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20016990	T	T	20016990	1	4	214	0	1	0	0	0	0	0	0	0	13056	1247	43	2		2	RAB5A	3	20016990	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4385948	20016990	178005440	280	166240											
OXSM	54995	broad.mit.edu	37	chr3	25835776	25835776	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatctgctgggagctgcaGgggcagtcgaggcagctttt	16	9	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25835776	T	T	25835776	3	4	214	1	0	0	0	0	1	0	0	0	11429	1000	35	2	1177	2	OXSM	3	25835776	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5818786	25835776	172186654	281	166241											
ARPP21	10777	broad.mit.edu	37	chr3	35757084	35757084	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgaatatatgtattagcaGatacatatatctatgcgtac	6	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35757084	T	T	35757084	1	4	214	0	1	0	0	0	0	0	0	0	982	957	33	3		3	ARPP21	3	35757084	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	9921308	35757084	162265346	282	166242											
EPM2AIP1	9852	broad.mit.edu	37	chr3	37034182	37034182	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgctcgggcagtacctctctCagcaacacctccatgcactg	8	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37034182	G	G	37034182	2	3	214	1	0	0	0	0	0	0	0	1	5226	813	29	4		4	EPM2AIP1	3	37034182	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1277098	37034182	160988248	283	166243											
SLC22A13	9390	broad.mit.edu	37	chr3	38316296	38316296	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccatagggtgaggcccagGggcctgggagggccacagcc	18	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38316296	A	A	38316296	1	1	214	0	1	0	0	0	0	0	0	0	14557	1247	43	4		4	SLC22A13	3	38316296	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1282114	38316296	159706134	284	166244											
SCN5A	6331	broad.mit.edu	37	chr3	38592196	38592196	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggtggtgatgggctcGtaggagatcttggatgggtt	19	3	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38592196	A	A	38592196	2	1	214	1	0	0	0	0	0	0	0	1	14035	1140	40	4		4	SCN5A	3	38592196	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	275900	38592196	159430234	285	166245											
ZNF197	10168	broad.mit.edu	37	chr3	44671009	44671009	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gccctggtagaggagctgcaGaaagaccttgatggaccagc	14	10	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44671009	C	C	44671009	3	2	214	1	0	0	0	0	1	0	0	0	17885	933	33	4	365	4	ZNF197	3	44671009	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	6078813	44671009	153351421	286	166246											
ZNF197	10168	broad.mit.edu	37	chr3	44673753	44673753	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtggctgaagtgccctctctCatccttgtgcttcaatgtcc	9	13	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44673753	T	T	44673753	1	4	214	0	1	0	0	0	0	0	0	0	17885	841	29	4		4	ZNF197	3	44673753	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2744	44673753	153348677	287	166247											
NBEAL2	23218	broad.mit.edu	37	chr3	47044463	47044463	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggacactcccatccccCgctggaaactgtccagcgcc	10	18	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47044463	T	T	47044463	3	4	214	1	0	0	0	0	1	0	0	0	10283	652	23	4	5610	4	NBEAL2	3	47044463	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2370710	47044463	150977967	288	166248											
SETD2	29072	broad.mit.edu	37	chr3	47161676	47161676	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tattaattagacttacctttCtgttaaataaacattttctt	2	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47161676	A	A	47161676	4	1	214	1	0	0	0	0	0	1	0	0	14244	922	32	3	3320	3	SETD2	3	47161676	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	117213	47161676	150860754	289	166249											
PFKFB4	5210	broad.mit.edu	37	chr3	48575973	48575973	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcgtaggagttctcatagCactcaatgcgcctcatgaag	9	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48575973	A	A	48575973	3	1	214	1	0	0	0	0	1	0	0	0	11858	710	25	3	851	3	PFKFB4	3	48575973	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1414297	48575973	149446457	290	166250											
BSN	8927	broad.mit.edu	37	chr3	49698291	49698291	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actacccacccttgcgtggtCttggcgagcatcgtgactac	10	14	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49698291	G	G	49698291	3	3	214	1	0	0	0	0	1	0	0	0	1539	913	32	4	9035	4	BSN	3	49698291	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1122318	49698291	148324139	291	166251											
RNF123	63891	broad.mit.edu	37	chr3	49735535	49735535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggggctcatgcagatcGgctggtgcaccatcagctgc	13	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49735535	T	T	49735535	3	4	214	1	0	0	0	0	1	0	0	0	13544	1116	39	1	470	1	RNF123	3	49735535	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	37244	49735535	148286895	292	166252											
HEMK1	51409	broad.mit.edu	37	chr3	50617250	50617250	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atacccctttctcaggctgtCacctcccactgctttgcctt	5	17	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50617250	T	T	50617250	1	4	214	0	1	0	0	0	0	0	0	0	7118	841	29	4		4	HEMK1	3	50617250	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	881715	50617250	147405180	293	166253											
HEMK1	51409	broad.mit.edu	37	chr3	50617272	50617272	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcccactgctttgcctttCagctatgaagaccccgcggc	8	17	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50617272	T	T	50617272	1	4	214	0	1	0	0	0	0	0	0	0	7118	841	29	4		4	HEMK1	3	50617272	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	22	50617272	147405158	294	166254											
CACNA1D	776	broad.mit.edu	37	chr3	53803960	53803960	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaccattgactccttcCtggttcattaatccattttc	5	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53803960	T	T	53803960	1	4	214	0	1	0	0	0	0	0	0	0	2567	696	24	4		4	CACNA1D	3	53803960	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3186688	53803960	144218470	295	166255											
CADPS	8618	broad.mit.edu	37	chr3	62751604	62751604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccatgatctgggtttccCcattgaggaaagcctgaaac	10	11	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62751604	A	A	62751604	3	1	214	1	0	0	0	0	1	0	0	0	2596	623	22	2	3753	2	CADPS	3	62751604	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	8947644	62751604	135270826	296	166256											
ADAMTS9	56999	broad.mit.edu	37	chr3	64587609	64587609	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagcaagcaaacttcagGgaatactcactgctccccag	9	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64587609	A	A	64587609	1	1	214	0	1	0	0	0	0	0	0	0	273	1247	43	4		4	ADAMTS9	3	64587609	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1836005	64587609	133434821	297	166257											
PDZRN3	23024	broad.mit.edu	37	chr3	73433185	73433185	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtggggctccggctcccGtcgctggctctccgctcttt	14	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73433185	T	T	73433185	3	4	214	1	0	0	0	0	1	0	0	0	11803	1136	40	3	672	3	PDZRN3	3	73433185	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	8845576	73433185	124589245	298	166258											
CNTN3	5067	broad.mit.edu	37	chr3	74347062	74347062	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcagtttttggagcacaaAtaattattattaggcggaac	8	5	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74347062	G	G	74347062	1	3	214	0	1	0	0	0	0	0	0	0	3674	116	4	5		5	CNTN3	3	74347062	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	913877	74347062	123675368	299	166259											
ROBO2	6092	broad.mit.edu	37	chr3	77147352	77147352	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccccggtcccacaggatGcttctgcccagcggatcctt	10	16	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77147352	T	T	77147352	3	4	214	1	0	0	0	0	1	0	0	0	13625	1319	46	3	257	3	ROBO2	3	77147352	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2800290	77147352	120875078	300	166260											
ROBO1	6091	broad.mit.edu	37	chr3	78663903	78663903	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catgttgctgtctgtagacaCgggacttgtgggcctagggc	15	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78663903	G	G	78663903	3	3	214	1	0	0	0	0	1	0	0	0	13624	536	19	4	641	4	ROBO1	3	78663903	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1516551	78663903	119358527	301	166261											
CADM2	253559	broad.mit.edu	37	chr3	85932560	85932560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctttatttacaatgcctGtcaaaacttccaaggcatat	5	9	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85932560	T	T	85932560	3	4	214	1	0	0	0	0	1	0	0	0	2593	1377	48	3	412	3	CADM2	3	85932560	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	7268657	85932560	112089870	302	166262											
VGLL3	389136	broad.mit.edu	37	chr3	87018166	87018166	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagggggtccagtgacctGgaagtcaggatgaactcccc	14	12	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87018166	A	A	87018166	4	1	214	1	0	0	0	0	0	1	0	0	17287	1357	47	4	477	4	VGLL3	3	87018166	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1085606	87018166	111004264	303	166263											
ARL13B	200894	broad.mit.edu	37	chr3	93761927	93761927	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacagtgatggctgccacctGaaacataaaatggagcatga	11	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93761927	A	A	93761927	2	1	214	1	0	0	0	0	0	0	0	1	931	1277	45	4		4	ARL13B	3	93761927	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	6743761	93761927	104260503	304	166264											
NSUN3	63899	broad.mit.edu	37	chr3	93802941	93802941	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctcttattttctctttttCtatttctagggagatactaa	4	7	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93802941	G	G	93802941	1	3	214	0	1	0	0	0	0	0	0	0	10774	928	32	4		4	NSUN3	3	93802941	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	41014	93802941	104219489	305	166265											
EPHA6	285220	broad.mit.edu	37	chr3	97167434	97167434	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatgagcagctgacctactCttccacaaggtccaaagccc	7	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97167434	A	A	97167434	3	1	214	1	0	0	0	0	1	0	0	0	5213	913	32	3	1780	3	EPHA6	3	97167434	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3364493	97167434	100854996	306	166266											
EPHA6	285220	broad.mit.edu	37	chr3	97167456	97167456	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacaaggtccaaagccccCagtgtcatcatcacaggtct	7	15	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97167456	A	A	97167456	2	1	214	1	0	0	0	0	0	0	0	1	5213	581	21	2		2	EPHA6	3	97167456	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	22	97167456	100854974	307	166267											
SENP7	57337	broad.mit.edu	37	chr3	101051736	101051736	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagacagatttgatataTaaaaattttttcatttaaga	5	2	1	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101051736	C	C	101051736	1	2	214	0	1	0	0	0	0	0	0	0	14164	1421	49	5		5	SENP7	3	101051736	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	3884280	101051736	96970694	308	166268											
ZPLD1	131368	broad.mit.edu	37	chr3	102187772	102187772	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtaggttggtactttcCagtgatgtcctgttttcacg	10	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102187772	A	A	102187772	1	1	214	0	1	0	0	0	0	0	0	0	18350	609	21	2		2	ZPLD1	3	102187772	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1136036	102187772	95834658	309	166269											
MYH15	22989	broad.mit.edu	37	chr3	108158799	108158799	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcttcattaaagccactgcTggaaagttgggcataacact	9	9	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108158799	A	A	108158799	1	1	214	0	1	0	0	0	0	0	0	0	10128	1595	55	5		5	MYH15	3	108158799	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	5971027	108158799	89863631	310	166270											
DPPA2	151871	broad.mit.edu	37	chr3	109023181	109023181	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactagtgagttcttcttgCatcctatttttgcctgatct	6	10	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109023181	A	A	109023181	1	1	214	0	1	0	0	0	0	0	0	0	4774	725	25	3		3	DPPA2	3	109023181	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	864382	109023181	88999249	311	166271											
DPPA4	55211	broad.mit.edu	37	chr3	109046777	109046777	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtcagcagcaccgcagaatCcaactctccagcttttctgc	7	15	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109046777	T	T	109046777	1	4	214	0	1	0	0	0	0	0	0	0	4776	870	30	4		4	DPPA4	3	109046777	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	23596	109046777	88975653	312	166272											
DPPA4	55211	broad.mit.edu	37	chr3	109050827	109050827	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggagggattggtatcttcTtctgaggtctggggttgtca	15	5	5	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109050827	A	A	109050827	3	1	214	1	0	0	0	0	1	0	0	0	4776	1609	56	5	704	5	DPPA4	3	109050827	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	4050	109050827	88971603	313	166273											
WDR52	55779	broad.mit.edu	37	chr3	113128135	113128135	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaagttaccgctgtagttAaagtccacataagcatatcc	7	10	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113128135	G	G	113128135	2	3	214	1	0	0	0	0	0	0	0	1	17431	359	13	5		5	WDR52	3	113128135	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	4077308	113128135	84894295	314	166274											
DRD3	1814	broad.mit.edu	37	chr3	113850108	113850108	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcttgggcgctatggtgGgactcagggaattccgagtc	16	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113850108	T	T	113850108	3	4	214	1	0	0	0	0	1	0	0	0	4798	1232	43	2	347	2	DRD3	3	113850108	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	721973	113850108	84172322	315	166275											
ARHGAP31	57514	broad.mit.edu	37	chr3	119102197	119102197	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgttggctgtgtgtatgctGactactgtgtgtcagtgtct	14	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119102197	C	C	119102197	1	2	214	0	1	0	0	0	0	0	0	0	882	1305	45	4		4	ARHGAP31	3	119102197	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5252089	119102197	78920233	316	166276											
ARGFX	503582	broad.mit.edu	37	chr3	121305010	121305010	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccttatgctttttctcctGtgatttcagatttctacagc	6	10	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121305010	A	A	121305010	3	1	214	1	0	0	0	0	1	0	0	0	861	1377	48	4	525	4	ARGFX	3	121305010	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2202813	121305010	76717420	317	166277											
HCLS1	3059	broad.mit.edu	37	chr3	121351227	121351227	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaggctcgagcacctcctCatagtccccctctggttcat	7	16	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121351227	T	T	121351227	3	4	214	1	0	0	0	0	1	0	0	0	7061	835	29	4	280	4	HCLS1	3	121351227	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	46217	121351227	76671203	318	166278											
CASR	846	broad.mit.edu	37	chr3	122003879	122003879	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacggacttagatctgacCgtccaggaaacaggtctgca	11	10	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122003879	A	A	122003879	2	1	214	1	0	0	0	0	0	0	0	1	2708	639	23	1		1	CASR	3	122003879	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	652652	122003879	76018551	319	166279											
ADCY5	111	broad.mit.edu	37	chr3	123049786	123049786	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacacagcagtgggcgtgGtcagcccttgcttcaggcag	13	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123049786	T	T	123049786	3	4	214	1	0	0	0	0	1	0	0	0	297	1252	44	3	2257	3	ADCY5	3	123049786	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1045907	123049786	74972644	320	166280											
MYLK	4638	broad.mit.edu	37	chr3	123417088	123417088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatgggcagcgccaagcCtgatgagaacctgaaatcca	11	13	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123417088	A	A	123417088	1	1	214	0	1	0	0	0	0	0	0	0	10150	696	24	2		2	MYLK	3	123417088	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	367302	123417088	74605342	321	166281											
SNX4	8723	broad.mit.edu	37	chr3	125216876	125216876	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctcaatgctgaatacttCtaaactactgccatttcact	4	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125216876	T	T	125216876	1	4	214	0	1	0	0	0	0	0	0	0	15018	928	32	4		4	SNX4	3	125216876	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1799788	125216876	72805554	322	166282											
SLC41A3	54946	broad.mit.edu	37	chr3	125741824	125741824	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actcaaatcccagggagccaGatggctctgagcaggcacag	12	12	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125741824	C	C	125741824	1	2	214	0	1	0	0	0	0	0	0	0	14745	957	33	4		4	SLC41A3	3	125741824	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	524948	125741824	72280606	323	166283											
ALDH1L1	10840	broad.mit.edu	37	chr3	125856649	125856649	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgcagggagggcccagCactcacgtagtcaatgctgc	13	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125856649	A	A	125856649	1	1	214	0	1	0	0	0	0	0	0	0	494	725	25	3		3	ALDH1L1	3	125856649	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	114825	125856649	72165781	324	166284											
CCDC37	348807	broad.mit.edu	37	chr3	126152008	126152008	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagctggagctcaaagcCcgagtcttccacttcggcga	12	13	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126152008	A	A	126152008	2	1	214	1	0	0	0	0	0	0	0	1	2836	610	22	2		2	CCDC37	3	126152008	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	295359	126152008	71870422	325	166285											
PLXND1	23129	broad.mit.edu	37	chr3	129284183	129284183	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccccaggcagcctcacCcgcagacagctgtacatgca	9	17	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129284183	A	A	129284183	2	1	214	1	0	0	0	0	0	0	0	1	12222	637	22	2		2	PLXND1	3	129284183	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	3132175	129284183	68738247	326	166286											
ACAD11	84129	broad.mit.edu	37	chr3	132338229	132338229	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataattttcttctacatataTaacaatagcaacaacaaaac	1	8	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132338229	A	A	132338229	1	1	214	0	1	0	0	0	0	0	0	0	109	1421	49	5		5	ACAD11	3	132338229	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	3054046	132338229	65684201	327	166287											
PPP2R3A	5523	broad.mit.edu	37	chr3	135774401	135774401	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actgaccatgctgctcaaatCttcacagagcgggtctttct	8	12	5	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135774401	T	T	135774401	1	4	214	0	1	0	0	0	0	0	0	0	12489	928	32	4		4	PPP2R3A	3	135774401	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3436172	135774401	62248029	328	166288											
RNF7	9616	broad.mit.edu	37	chr3	141457359	141457359	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagggtccaggtgatggGtaagcgctgcacgcgagtcc	16	11	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141457359	T	T	141457359	5	4	214	1	0	0	0	0	0	0	1	0	13610	1275	44	3	178	3	RNF7	3	141457359	Splice_Site	SNP	G	TCGA-75-5126-01A-01D-1753-08	5682958	141457359	56565071	329	166289											
ATR	545	broad.mit.edu	37	chr3	142279075	142279075	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagttcattacaggaaaccCaaccccaagaaacaagaagt	6	11	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142279075	A	A	142279075	1	1	214	0	1	0	0	0	0	0	0	0	1208	609	21	2		2	ATR	3	142279075	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	821716	142279075	55743355	330	166290											
TRPC1	7220	broad.mit.edu	37	chr3	142524944	142524944	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacttccatgagacagaagaTgcaaagtacagatcaggcaa	10	8	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142524944	C	C	142524944	3	2	214	1	0	0	0	0	1	0	0	0	16703	1464	51	5	2193	5	TRPC1	3	142524944	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	245869	142524944	55497486	331	166291											
HLTF	6596	broad.mit.edu	37	chr3	148791111	148791111	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaaattgaatcctaaagcTataatttacaaaataaaaag	3	6	0	1	rs138362499		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	148791111	C	C	148791111	5	2	214	1	0	0	0	0	0	0	1	0	7282	1536	53	5	2585	5	HLTF	3	148791111	Splice_Site	SNP	T	TCGA-75-5126-01A-01D-1753-08	6266167	148791111	49231319	332	166292											
FAM194A	131831	broad.mit.edu	37	chr3	150398827	150398827	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atccatcataagtttttattCtggtaatagctttattaaga	5	5	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150398827	G	G	150398827	1	3	214	0	1	0	0	0	0	0	0	0	5573	928	32	4		4	FAM194A	3	150398827	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1607716	150398827	47623603	333	166293											
DHX36	170506	broad.mit.edu	37	chr3	154002886	154002886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actactctctcttctaagtcCaaatgcccaaatattgttca	3	12	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154002886	A	A	154002886	1	1	214	0	1	0	0	0	0	0	0	0	4549	609	21	2		2	DHX36	3	154002886	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3604059	154002886	44019544	334	166294											
PLCH1	23007	broad.mit.edu	37	chr3	155206539	155206539	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaggaaccgaaccaaagCtatttctggcatgtgtactg	9	10	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155206539	A	A	155206539	3	1	214	1	0	0	0	0	1	0	0	0	12132	797	28	3	2703	3	PLCH1	3	155206539	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1203653	155206539	42815891	335	166295											
GMPS	8833	broad.mit.edu	37	chr3	155654099	155654099	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcttttctatggtgtggtGattggttctacatatacctt	10	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155654099	A	A	155654099	1	1	214	0	1	0	0	0	0	0	0	0	6562	1305	45	4		4	GMPS	3	155654099	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	447560	155654099	42368331	336	166296											
SHOX2	6474	broad.mit.edu	37	chr3	157820469	157820469	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggcagctgggtacctGcactcgggcctccgacaggc	13	16	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157820469	A	A	157820469	4	1	214	1	0	0	0	0	0	1	0	0	14402	1328	46	4	458	4	SHOX2	3	157820469	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2166370	157820469	40201961	337	166297											
GFM1	85476	broad.mit.edu	37	chr3	158363924	158363924	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttggaatgcagggacagaGaaagtctgaattgctgtgct	13	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158363924	A	A	158363924	1	1	214	0	1	0	0	0	0	0	0	0	6405	957	33	4		4	GFM1	3	158363924	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	543455	158363924	39658506	338	166298											
KPNA4	3840	broad.mit.edu	37	chr3	160253517	160253517	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaaactcagttaaaaagtCaccttaaaattctcttatta	3	7	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160253517	A	A	160253517	1	1	214	0	1	0	0	0	0	0	0	0	8503	841	29	3		3	KPNA4	3	160253517	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1889593	160253517	37768913	339	166299											
SI	6476	broad.mit.edu	37	chr3	164735801	164735801	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaccatgagcattgccCtcctcttccagagccatgta	6	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164735801	A	A	164735801	3	1	214	1	0	0	0	0	1	0	0	0	14410	680	24	2	2086	2	SI	3	164735801	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4482284	164735801	33286629	340	166300											
ZBBX	79740	broad.mit.edu	37	chr3	167016162	167016162	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaagtaagttgagtctttCatttgtatcaaaaataaaga	8	3	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167016162	A	A	167016162	4	1	214	1	0	0	0	0	0	1	0	0	17643	835	29	3	608	3	ZBBX	3	167016162	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2280361	167016162	31006268	341	166301											
GOLIM4	27333	broad.mit.edu	37	chr3	167761305	167761305	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actgtgctgtttctttagctCctcgtgttggctctgcaaag	10	10	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167761305	G	G	167761305	3	3	214	1	0	0	0	0	1	0	0	0	6630	864	30	4	1759	4	GOLIM4	3	167761305	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	745143	167761305	30261125	342	166302											
PLD1	5337	broad.mit.edu	37	chr3	171395355	171395355	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccattatgatactcaCcagcaaaaggtttatcaagt	5	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171395355	T	T	171395355	5	4	214	1	0	0	0	0	0	0	1	0	12140	521	18	4	1271	4	PLD1	3	171395355	Splice_Site	SNP	C	TCGA-75-5126-01A-01D-1753-08	3634050	171395355	26627075	343	166303											
NLGN1	22871	broad.mit.edu	37	chr3	173998675	173998675	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactattgcagttggagcatCactgctgtttctgaacatct	8	10	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173998675	G	G	173998675	4	3	214	1	0	0	0	0	0	1	0	0	10556	838	29	4	2072	4	NLGN1	3	173998675	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2603320	173998675	24023755	344	166304											
MFN1	55669	broad.mit.edu	37	chr3	179104264	179104264	+	Missense_Mutation	SNP	C	T	T													actcctatctgtttcattaaCtatgtatggagctttgtatc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179104264	T	T	179104264	3	4	214	1	0	0	0	0	1	0	0	0	9616	565	20	4	1917	4	MFN1	3	179104264	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	5105589	179104264	18918166	345	166305	698	2									
MFN1	55669	broad.mit.edu	37	chr3	179104270	179104270	+	Missense_Mutation	SNP	A	G	G													atctgtttcattaactatgtAtggagctttgtatctttatg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179104270	G	G	179104270	3	3	214	1	0	0	0	0	1	0	0	0	9616	449	16	5	1923	5	MFN1	3	179104270	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	6	179104270	18918160	346	166306	698	2									
PEX5L	51555	broad.mit.edu	37	chr3	179605481	179605481	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtattggatgttactGgccttgctattgcttccgat	10	9	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179605481	T	T	179605481	3	4	214	1	0	0	0	0	1	0	0	0	11844	1348	47	2	1638	2	PEX5L	3	179605481	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	501211	179605481	18416949	347	166307											
TTC14	151613	broad.mit.edu	37	chr3	180322022	180322022	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctcattacaggctctttgtCccttaagagatgtgccttct	7	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180322022	T	T	180322022	3	4	214	1	0	0	0	0	1	0	0	0	16807	855	30	4	510	4	TTC14	3	180322022	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	716541	180322022	17700408	348	166308											
FXR1	8087	broad.mit.edu	37	chr3	180667013	180667013	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taattagcttgtttgtttatAgtctgccagtgaagcaactg	9	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180667013	T	T	180667013	5	4	214	1	0	0	0	0	0	0	1	0	6175	434	15	5	538	5	FXR1	3	180667013	Splice_Site	SNP	A	TCGA-75-5126-01A-01D-1753-08	344991	180667013	17355417	349	166309											
FXR1	8087	broad.mit.edu	37	chr3	180679407	180679407	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactacataaatgttgtacaTttgctacaaatttaaaatgt	4	5	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180679407	A	A	180679407	1	1	214	0	1	0	0	0	0	0	0	0	6175	1508	52	5		5	FXR1	3	180679407	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	12394	180679407	17343023	350	166310											
VPS8	23355	broad.mit.edu	37	chr3	184648287	184648287	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttaattacattcacaatatCttatccattcccggacacag	3	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	184648287	G	G	184648287	3	3	214	1	0	0	0	0	1	0	0	0	17345	903	32	4	2955	4	VPS8	3	184648287	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3968880	184648287	13374143	351	166311											
LEPREL1	55214	broad.mit.edu	37	chr3	189704525	189704525	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtaataaaaacataaAaaggattccactgaatcatt	7	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189704525	C	C	189704525	1	2	214	0	1	0	0	0	0	0	0	0	8802	29	1	5		5	LEPREL1	3	189704525	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	5056238	189704525	8317905	352	166312											
TNK2	10188	broad.mit.edu	37	chr3	195609965	195609965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaggatggagagaggaacCgaaccacacatatgggaccg	13	9	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195609965	A	A	195609965	1	1	214	0	1	0	0	0	0	0	0	0	16441	667	23	1		1	TNK2	3	195609965	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	5905440	195609965	2412465	353	166313											
FGFRL1	53834	broad.mit.edu	37	chr4	1018200	1018200	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaaggtgcgcagcgacGtgaagccggtgatccagtgg	17	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1018200	T	T	1018200	3	4	214	1	0	0	0	0	1	0	0	0	5926	1145	40	3	838	3	FGFRL1	4	1018200	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08		1018200	190136076	354	166314											
SH3BP2	6452	broad.mit.edu	37	chr4	2833710	2833710	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcgaagtggaaaggtcaGcacaaagccctgtgtgtgct	13	10	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2833710	A	A	2833710	1	1	214	0	1	0	0	0	0	0	0	0	14358	986	34	4		4	SH3BP2	4	2833710	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1815510	2833710	188320566	355	166315											
HTT	3064	broad.mit.edu	37	chr4	3137637	3137637	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcttttgttaggctggtGagctttttggaggcaaaagc	13	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3137637	T	T	3137637	2	4	214	1	0	0	0	0	0	0	0	1	7527	1277	45	3		3	HTT	4	3137637	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	303927	3137637	188016639	356	166316											
CPZ	8532	broad.mit.edu	37	chr4	8608444	8608444	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgaccccacccagtcgGgggttggccatgttttcagg	14	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8608444	C	C	8608444	1	2	214	0	1	0	0	0	0	0	0	0	3871	1247	43	4		4	CPZ	4	8608444	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5470807	8608444	182545832	357	166317											
SLIT2	9353	broad.mit.edu	37	chr4	20523994	20523994	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaccagtggtgcctgttaGggatggagaaaaagaatatt	14	4	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20523994	T	T	20523994	1	4	214	0	1	0	0	0	0	0	0	0	14854	1015	35	2		2	SLIT2	4	20523994	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	11915550	20523994	170630282	358	166318											
SLC34A2	10568	broad.mit.edu	37	chr4	25669550	25669550	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tatcatgggggccaacattgGaacgtcaatcaccaacacta	8	11	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25669550	C	C	25669550	3	2	214	1	0	0	0	0	1	0	0	0	14682	1174	41	4	590	4	SLC34A2	4	25669550	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5145556	25669550	165484726	359	166319											
ATP8A1	10396	broad.mit.edu	37	chr4	42571227	42571227	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggttcagggacatggcttcAgaaagcaagaagagaggcag	15	6	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42571227	T	T	42571227	1	4	214	0	1	0	0	0	0	0	0	0	1196	203	7	5		5	ATP8A1	4	42571227	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	16901677	42571227	148583049	360	166320											
GABRG1	2565	broad.mit.edu	37	chr4	46053639	46053639	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtactcagggttgtcatagtCagaactgtagtgatacctat	10	7	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46053639	A	A	46053639	2	1	214	1	0	0	0	0	0	0	0	1	6231	813	29	3		3	GABRG1	4	46053639	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	3482412	46053639	145100637	361	166321											
CORIN	10699	broad.mit.edu	37	chr4	47643888	47643888	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatattactgccaagttcCacaaagccttctgagaaatt	6	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47643888	T	T	47643888	1	4	214	0	1	0	0	0	0	0	0	0	3784	609	21	4		4	CORIN	4	47643888	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1590249	47643888	143510388	362	166322											
FRYL	285527	broad.mit.edu	37	chr4	48553511	48553511	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacagagaagtacttacCtctcttcaatattctcttta	4	10	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48553511	T	T	48553511	3	4	214	1	0	0	0	0	1	0	0	0	6124	695	24	4	4633	4	FRYL	4	48553511	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	909623	48553511	142600765	363	166323											
CWH43	80157	broad.mit.edu	37	chr4	48993371	48993371	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacatcaactctgtcttcctGagtataaagatggtatcaga	7	8	4	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48993371	A	A	48993371	1	1	214	0	1	0	0	0	0	0	0	0	4106	1305	45	4		4	CWH43	4	48993371	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	439860	48993371	142160905	364	166324											
CEP135	9662	broad.mit.edu	37	chr4	56877751	56877751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttaactttttcatGtgcctctacaattagatatt	3	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56877751	T	T	56877751	1	4	214	0	1	0	0	0	0	0	0	0	3277	1392	48	3		3	CEP135	4	56877751	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	7884380	56877751	134276525	365	166325											
LPHN3	23284	broad.mit.edu	37	chr4	62812636	62812636	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgcatttactttaggagaGatcagagtggcctttgtcct	10	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62812636	T	T	62812636	3	4	214	1	0	0	0	0	1	0	0	0	9004	933	33	3	2270	3	LPHN3	4	62812636	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5934885	62812636	128341640	366	166326											
EPHA5	2044	broad.mit.edu	37	chr4	66356384	66356384	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atccattccagaaagacactAgtttcattaacatttgagat	5	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66356384	G	G	66356384	2	3	214	1	0	0	0	0	0	0	0	1	5212	407	15	5		5	EPHA5	4	66356384	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	3543748	66356384	124797892	367	166327											
STAP1	26228	broad.mit.edu	37	chr4	68449311	68449311	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgtttttatacagtgtccCggaaagaggcaactgagatg	12	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68449311	G	G	68449311	3	3	214	1	0	0	0	0	1	0	0	0	15370	643	23	4	572	4	STAP1	4	68449311	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2092927	68449311	122704965	368	166328											
TMPRSS11D	9407	broad.mit.edu	37	chr4	68725511	68725511	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatctgggacatggctctaGccatagaaacatattcgtag	9	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68725511	C	C	68725511	1	2	214	0	1	0	0	0	0	0	0	0	16364	986	34	4		4	TMPRSS11D	4	68725511	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	276200	68725511	122428765	369	166329											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68810272	68810272	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctcgtaagtccttaagttGatatgtgttgctttgtccga	9	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68810272	T	T	68810272	3	4	214	1	0	0	0	0	1	0	0	0	16362	1299	45	3	1080	3	TMPRSS11A	4	68810272	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	84761	68810272	122344004	370	166330											
UGT2B4	7363	broad.mit.edu	37	chr4	70346314	70346314	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaataaactaaaggagttCatttattgggtttcccagct	8	6	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70346314	A	A	70346314	1	1	214	0	1	0	0	0	0	0	0	0	17087	841	29	3		3	UGT2B4	4	70346314	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1536042	70346314	120807962	371	166331											
UGT2A1	10941	broad.mit.edu	37	chr4	70455443	70455443	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagataaatatgtgatacActtttgctctacaagtttaa	6	5	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70455443	C	C	70455443	1	2	214	0	1	0	0	0	0	0	0	0	17079	174	6	5		5	UGT2A1	4	70455443	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	109129	70455443	120698833	372	166332											
SMR3B	10879	broad.mit.edu	37	chr4	71255744	71255744	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaccacaaaagacaccaCtacccttgtaactactgctt	3	16	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71255744	A	A	71255744	1	1	214	0	1	0	0	0	0	0	0	0	14926	580	20	3		3	SMR3B	4	71255744	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	800301	71255744	119898532	373	166333											
SLC4A4	8671	broad.mit.edu	37	chr4	72121090	72121090	+	Missense_Mutation	SNP	C	T	T													tattgaaaatgctgatgaatCcagcagcagcatcctaaaac							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72121090	T	T	72121090	3	4	214	1	0	0	0	0	1	0	0	0	14770	855	30	4	233	4	SLC4A4	4	72121090	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	865346	72121090	119033186	374	166334	699	2									
SLC4A4	8671	broad.mit.edu	37	chr4	72121092	72121092	+	Missense_Mutation	SNP	A	T	T													ttgaaaatgctgatgaatccAgcagcagcatcctaaaacct							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72121092	T	T	72121092	3	4	214	1	0	0	0	0	1	0	0	0	14770	188	7	5	235	5	SLC4A4	4	72121092	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	2	72121092	119033184	375	166335	699	2									
NPFFR2	10886	broad.mit.edu	37	chr4	73012886	73012886	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtccagtctactggtgccGggaagactggccaaatcagg	13	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73012886	A	A	73012886	3	1	214	1	0	0	0	0	1	0	0	0	10673	1116	39	4	946	4	NPFFR2	4	73012886	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	891794	73012886	118141390	376	166336											
ALB	213	broad.mit.edu	37	chr4	74275211	74275211	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgttgccaaaggtattaTgcaaaagaatagaaaaaaag	9	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74275211	C	C	74275211	1	2	214	0	1	0	0	0	0	0	0	0	486	1479	51	5		5	ALB	4	74275211	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1262325	74275211	116879065	377	166337											
SDAD1	55153	broad.mit.edu	37	chr4	76885364	76885364	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cataagcaatgattgaataaTctgaattggaaacaaaaaag	7	4	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76885364	A	A	76885364	3	1	214	1	0	0	0	0	1	0	0	0	14063	1449	50	5	994	5	SDAD1	4	76885364	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	2610153	76885364	114268912	378	166338											
ART3	419	broad.mit.edu	37	chr4	77022153	77022153	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaactcaggtgagaaaaaCcagaagcttgaagaccatgg	11	7	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77022153	G	G	77022153	3	3	214	1	0	0	0	0	1	0	0	0	1002	506	18	4	944	4	ART3	4	77022153	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	136789	77022153	114132123	379	166339											
ANKRD56	345079	broad.mit.edu	37	chr4	77817765	77817765	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaagcccccggggagtctTtgggcccactgctgctctcc	12	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77817765	A	A	77817765	3	1	214	1	0	0	0	0	1	0	0	0	682	1841	64	5	1147	5	ANKRD56	4	77817765	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	795612	77817765	113336511	380	166340											
SEPT11	55752	broad.mit.edu	37	chr4	77926984	77926984	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttggggggacatgaatggaTgaggagatagcaggatccat	16	4	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77926984	A	A	77926984	1	1	214	0	1	0	0	0	0	0	0	0	14174	1479	51	5		5	SEPT11	4	77926984	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	109219	77926984	113227292	381	166341											
ANTXR2	118429	broad.mit.edu	37	chr4	80899156	80899156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattacacaaaatctggacaCataccttaattggggtgtac	7	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80899156	T	T	80899156	1	4	214	0	1	0	0	0	0	0	0	0	712	493	17	4		4	ANTXR2	4	80899156	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2972172	80899156	110255120	382	166342											
ENOPH1	58478	broad.mit.edu	37	chr4	83381180	83381180	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgcacgtagctgtggtggtGagaccaggcaacgcaggatt	16	8	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83381180	A	A	83381180	2	1	214	1	0	0	0	0	0	0	0	1	5166	1277	45	4		4	ENOPH1	4	83381180	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2482024	83381180	107773096	383	166343											
SNCA	6622	broad.mit.edu	37	chr4	90749385	90749385	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caagctagccttaaattgctGattagctagttttcaataca	6	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90749385	A	A	90749385	1	1	214	0	1	0	0	0	0	0	0	0	14954	1305	45	4		4	SNCA	4	90749385	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	7368205	90749385	100404891	384	166344											
GRID2	2895	broad.mit.edu	37	chr4	94377047	94377047	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaactggcttaatcccccaCgattacaaatgggatcaatg	8	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94377047	A	A	94377047	2	1	214	1	0	0	0	0	0	0	0	1	6838	528	19	3		3	GRID2	4	94377047	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	3627662	94377047	96777229	385	166345											
HPGDS	27306	broad.mit.edu	37	chr4	95239050	95239050	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttggtcaaatatcttgctAttgctaggctctggtgaaga	10	6	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95239050	T	T	95239050	3	4	214	1	0	0	0	0	1	0	0	0	7402	449	16	5	415	5	HPGDS	4	95239050	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	862003	95239050	95915226	386	166346											
UNC5C	8633	broad.mit.edu	37	chr4	96106360	96106360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttcctataatgacatGccccaaacccaaagcacgtt	4	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96106360	T	T	96106360	1	4	214	0	1	0	0	0	0	0	0	0	17119	1334	46	3		3	UNC5C	4	96106360	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	867310	96106360	95047916	387	166347											
UNC5C	8633	broad.mit.edu	37	chr4	96141040	96141040	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattgctgtcttcatggagCttacattctagctgaatgag	9	7	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96141040	A	A	96141040	1	1	214	0	1	0	0	0	0	0	0	0	17119	812	28	3		3	UNC5C	4	96141040	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	34680	96141040	95013236	388	166348											
DNAJB14	79982	broad.mit.edu	37	chr4	100844368	100844368	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaagagagtgtgttataaTgtaaatttcaaggaagacgg	11	3	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100844368	C	C	100844368	1	2	214	0	1	0	0	0	0	0	0	0	4659	1479	51	5		5	DNAJB14	4	100844368	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	4703328	100844368	90309908	389	166349											
LEF1	51176	broad.mit.edu	37	chr4	109086290	109086290	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggccttgtcgtggtagggCtcctgagaggtttgtgcttg	16	8	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109086290	G	G	109086290	3	3	214	1	0	0	0	0	1	0	0	0	8786	796	28	4	1080	4	LEF1	4	109086290	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	8241922	109086290	82067986	390	166350											
LEF1	51176	broad.mit.edu	37	chr4	109088893	109088893	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagttccgggtcccccccgcCgccgccacctcctccggaga	11	21	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109088893	T	T	109088893	3	4	214	1	0	0	0	0	1	0	0	0	8786	652	23	4	1309	4	LEF1	4	109088893	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2603	109088893	82065383	391	166351											
AGXT2L1	64850	broad.mit.edu	37	chr4	109667790	109667790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtattctgcatttaagaagcCcacattataaataggatgta	7	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109667790	A	A	109667790	1	1	214	0	1	0	0	0	0	0	0	0	406	638	22	2		2	AGXT2L1	4	109667790	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	578897	109667790	81486486	392	166352											
COL25A1	84570	broad.mit.edu	37	chr4	109745371	109745371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcacccttctcaccccgtgGaccagggaagccctgtaaga	9	15	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109745371	T	T	109745371	3	4	214	1	0	0	0	0	1	0	0	0	3716	1174	41	3	260	3	COL25A1	4	109745371	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	77581	109745371	81408905	393	166353											
GAR1	54433	broad.mit.edu	37	chr4	110743587	110743587	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggacctccaagaggtggtGgcaggggaggccgaggagga	20	7	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110743587	T	T	110743587	3	4	214	1	0	0	0	0	1	0	0	0	6302	1348	47	2	528	2	GAR1	4	110743587	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	998216	110743587	80410689	394	166354											
EGF	1950	broad.mit.edu	37	chr4	110915979	110915979	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccctgtcccacgatgggtActgcctccatgatggtgtgt	11	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110915979	G	G	110915979	3	3	214	1	0	0	0	0	1	0	0	0	5002	391	14	5	3026	5	EGF	4	110915979	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	172392	110915979	80238297	395	166355											
ENPEP	2028	broad.mit.edu	37	chr4	111469592	111469592	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaaccatgtttgcttgccAggtggaatcaaaagaaagtg	10	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111469592	T	T	111469592	1	4	214	0	1	0	0	0	0	0	0	0	5170	203	7	5		5	ENPEP	4	111469592	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	553613	111469592	79684684	396	166356											
ANK2	287	broad.mit.edu	37	chr4	113748489	113748489	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaaagcagaaagccaatgAgttacagcaactggaacttg	9	7	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113748489	T	T	113748489	1	4	214	0	1	0	0	0	0	0	0	0	621	319	11	5		5	ANK2	4	113748489	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	2278897	113748489	77405787	397	166357											
PDE5A	8654	broad.mit.edu	37	chr4	120442041	120442041	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatatgctataaattttaCtactaagcaacaaaatgtat	4	5	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120442041	T	T	120442041	1	4	214	0	1	0	0	0	0	0	0	0	11738	580	20	4		4	PDE5A	4	120442041	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6693552	120442041	70712235	398	166358											
FAT4	79633	broad.mit.edu	37	chr4	126373662	126373662	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctccgtattaaaaagccgtGagagtcttccagtcatcatc	8	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126373662	T	T	126373662	4	4	214	1	0	0	0	0	0	1	0	0	5749	1291	45	3	11525	3	FAT4	4	126373662	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5931621	126373662	64780614	399	166359											
PCDH10	57575	broad.mit.edu	37	chr4	134072243	134072244	+	Missense_Mutation	DNP	GG	TT	TT													ctggaggtaagcggcgagttGgactatgaagagagcccagt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	134072244	TT	TT	134072243	3	4	214	1	0	0	0	0	1	0	0	0	11601	1339	47	2	950	2	PCDH10	4	134072243	Missense_Mutation	DNP	GG	TCGA-75-5126-01A-01D-1753-08	7698581	134072243	57082033	400	166360											
PCDH10	57575	broad.mit.edu	37	chr4	134084318	134084318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccagaagcccagcctgGggcagagcggtccttttcca	11	14	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134084318	T	T	134084318	3	4	214	1	0	0	0	0	1	0	0	0	11601	1232	43	2	3058	2	PCDH10	4	134084318	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	12075	134084318	57069958	401	166361											
DCHS2	54798	broad.mit.edu	37	chr4	155255945	155255945	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagaaaaaaattattcaaGattgtaccgcctacaaaaaa	5	6	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155255945	T	T	155255945	1	4	214	0	1	0	0	0	0	0	0	0	4321	957	33	3		3	DCHS2	4	155255945	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	21171627	155255945	35898331	402	166362											
FGB	2244	broad.mit.edu	37	chr4	155487824	155487824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcagaagcaagtaaaaGgtagatatccttgtgctttc	11	6	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155487824	T	T	155487824	3	4	214	1	0	0	0	0	1	0	0	0	5888	1014	35	2	500	2	FGB	4	155487824	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	231879	155487824	35666452	403	166363											
NAF1	92345	broad.mit.edu	37	chr4	164061457	164061457	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctcctttattttaatacCtttactctcaatgtgatctg	4	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164061457	T	T	164061457	3	4	214	1	0	0	0	0	1	0	0	0	10234	681	24	4	845	4	NAF1	4	164061457	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	8573633	164061457	27092819	404	166364											
TRIM60	166655	broad.mit.edu	37	chr4	165961938	165961938	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctactgagggaggtagaGggcaagtctgtgcagtcaaa	14	7	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165961938	T	T	165961938	3	4	214	1	0	0	0	0	1	0	0	0	16660	991	35	2	716	2	TRIM60	4	165961938	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1900481	165961938	25192338	405	166365											
TLL1	7092	broad.mit.edu	37	chr4	166964408	166964409	+	Intron	INS	-	G	G													aggcttagttatttgtttatINStttttggctttcttcagcga							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	166964409	G	G	166964408	6	5	214	0	1	1	1	0	0	0	0	0	16068	1508	52	0		0	TLL1	4	166964408	Intron	INS	-	TCGA-75-5126-01A-01D-1753-08	1002470	166964408	24189868	406	166366											
TLL1	7092	broad.mit.edu	37	chr4	166964506	166964506	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgactatcgcccgatgaaaGaatgtgtgtggaaaataaca	10	6	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	166964506	C	C	166964506	3	2	214	1	0	0	0	0	1	0	0	0	16068	943	33	4	1505	4	TLL1	4	166964506	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	98	166964506	24189770	407	166367											
TLL1	7092	broad.mit.edu	37	chr4	167020572	167020572	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgacttgaattatccttcCagacatttgaagtggaggaa	9	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167020572	T	T	167020572	4	4	214	1	0	0	0	0	0	1	0	0	16068	595	21	4	2878	4	TLL1	4	167020572	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	56066	167020572	24133704	408	166368											
VEGFC	7424	broad.mit.edu	37	chr4	177605214	177605214	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctaggagaacaaacaagaaCacacttacgttaaagatcaa	7	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177605214	A	A	177605214	1	1	214	0	1	0	0	0	0	0	0	0	17279	493	17	3		3	VEGFC	4	177605214	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	10584642	177605214	13549062	409	166369											
PLEKHG4B	153478	broad.mit.edu	37	chr5	162943	162943	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctcggtggctgcagaggCcttccccggggcaggtgtgg	17	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162943	T	T	162943	3	4	214	1	0	0	0	0	1	0	0	0	12167	739	26	4	1730	4	PLEKHG4B	5	162943	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08		162943	180752317	410	166370											
CEP72	55722	broad.mit.edu	37	chr5	620504	620504	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tggaacggggagttggttttCtacgctggtggcttgagttc	16	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	620504	A	A	620504	1	1	214	0	1	0	0	0	0	0	0	0	3290	928	32	3		3	CEP72	5	620504	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	457561	620504	180294756	411	166371											
BRD9	65980	broad.mit.edu	37	chr5	889615	889615	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagggtctgtttcacagctGacgaggctggcgtggggaat	17	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	889615	A	A	889615	1	1	214	0	1	0	0	0	0	0	0	0	1516	1305	45	4		4	BRD9	5	889615	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	269111	889615	180025645	412	166372											
LPCAT1	79888	broad.mit.edu	37	chr5	1488651	1488651	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagccaatcttcacaatatAttttcttttctgctgacata	4	9	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1488651	G	G	1488651	1	3	214	0	1	0	0	0	0	0	0	0	8997	464	16	5		5	LPCAT1	5	1488651	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	599036	1488651	179426609	413	166373											
ADAMTS16	170690	broad.mit.edu	37	chr5	5303904	5303904	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcactggtctcgcgggagCgaggttgactagctctcccc	14	13	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5303904	A	A	5303904	1	1	214	0	1	0	0	0	0	0	0	0	261	783	27	3		3	ADAMTS16	5	5303904	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3815253	5303904	175611356	414	166374											
NSUN2	54888	broad.mit.edu	37	chr5	6620270	6620271	+	Missense_Mutation	DNP	CC	AA	AA													agaagaggatctctttcctgCcgtccacatctatctggagc					rs140003855	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6620271	AA	AA	6620270	3	1	214	1	0	0	0	0	1	0	0	0	10773	739	26	3	1591	3	NSUN2	5	6620270	Missense_Mutation	DNP	CC	TCGA-75-5126-01A-01D-1753-08	1316366	6620270	174294990	415	166375											
ADCY2	108	broad.mit.edu	37	chr5	7521032	7521032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggtgcacctccacatcCatggagaatgactttccaca	10	12	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7521032	A	A	7521032	1	1	214	0	1	0	0	0	0	0	0	0	294	609	21	2		2	ADCY2	5	7521032	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	900762	7521032	173394228	416	166376											
DNAH5	1767	broad.mit.edu	37	chr5	13890989	13890989	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcacagagcactgcaagtaGagaaaaaaatctaacttata	6	7	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13890989	C	C	13890989	1	2	214	0	1	0	0	0	0	0	0	0	4644	957	33	4		4	DNAH5	5	13890989	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	6369957	13890989	167024271	417	166377											
TRIO	7204	broad.mit.edu	37	chr5	14369074	14369074	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcttaatttattggacAgctcaatcattgttaacatg	7	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14369074	T	T	14369074	1	4	214	0	1	0	0	0	0	0	0	0	16677	203	7	5		5	TRIO	5	14369074	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	478085	14369074	166546186	418	166378											
MARCH11	441061	broad.mit.edu	37	chr5	16067691	16067691	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacacatagccacactgaaaCcttggtgaggttaactgagt	9	9	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16067691	G	G	16067691	3	3	214	1	0	0	0	0	1	0	0	0	9392	506	18	4	114	4	MARCH11	5	16067691	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1698617	16067691	164847569	419	166379											
MYO10	4651	broad.mit.edu	37	chr5	16671657	16671657	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgtggcagccagcctacaGagaggagtcaagagaggctc	15	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16671657	C	C	16671657	1	2	214	0	1	0	0	0	0	0	0	0	10156	957	33	4		4	MYO10	5	16671657	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	603966	16671657	164243603	420	166380											
CDH18	1016	broad.mit.edu	37	chr5	19473707	19473707	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgtcaaaggcctctgtGtcttcctctccgcctccttc	8	15	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19473707	T	T	19473707	3	4	214	1	0	0	0	0	1	0	0	0	3133	1368	48	3	375	3	CDH18	5	19473707	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2802050	19473707	161441553	421	166381											
CDH18	1016	broad.mit.edu	37	chr5	19838999	19838999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggtttggtttctcatcaCcttgatggagctgtggtgag	13	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19838999	A	A	19838999	3	1	214	1	0	0	0	0	1	0	0	0	3133	507	18	3	2319	3	CDH18	5	19838999	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	365292	19838999	161076261	422	166382											
CDH9	1007	broad.mit.edu	37	chr5	26906161	26906161	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccatctggccacccatgtCtttggcctgtataacaacct	6	15	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26906161	T	T	26906161	3	4	214	1	0	0	0	0	1	0	0	0	3147	913	32	4	1683	4	CDH9	5	26906161	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	7067162	26906161	154009099	423	166383											
CDH6	1004	broad.mit.edu	37	chr5	31294201	31294201	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggctggacagggaagaaAaacccgtttacatccttcga	11	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31294201	G	G	31294201	3	3	214	1	0	0	0	0	1	0	0	0	3144	15	1	5	367	5	CDH6	5	31294201	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	4388040	31294201	149621059	424	166384											
GOLPH3	64083	broad.mit.edu	37	chr5	32126342	32126342	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgaacgccgccaccacCgcccacagaacctcattggt	9	16	1	2	rs147714399		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32126342	G	G	32126342	2	3	214	1	0	0	0	0	0	0	0	1	6632	639	23	4		4	GOLPH3	5	32126342	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	832141	32126342	148788918	425	166385											
ADAMTS12	81792	broad.mit.edu	37	chr5	33577099	33577099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggtgggttttttccattgGaaatagtgcctttgtttggt	12	4	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33577099	T	T	33577099	3	4	214	1	0	0	0	0	1	0	0	0	257	1174	41	3	1776	3	ADAMTS12	5	33577099	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1450757	33577099	147338161	426	166386											
ADAMTS12	81792	broad.mit.edu	37	chr5	33642030	33642030	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgctctctggtttcttccCcactgtgatgcacttgcctg	8	13	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33642030	A	A	33642030	3	1	214	1	0	0	0	0	1	0	0	0	257	623	22	2	3237	2	ADAMTS12	5	33642030	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	64931	33642030	147273230	427	166387											
ADAMTS12	81792	broad.mit.edu	37	chr5	33751492	33751492	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattcttcaacccaggaggaCatgtgagtcacaataccctt	8	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33751492	T	T	33751492	1	4	214	0	1	0	0	0	0	0	0	0	257	493	17	4		4	ADAMTS12	5	33751492	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	109462	33751492	147163768	428	166388											
SLC45A2	51151	broad.mit.edu	37	chr5	33947355	33947355	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacaccaaacaggctgcaCaggaccagggtggagtagac	12	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33947355	A	A	33947355	2	1	214	1	0	0	0	0	0	0	0	1	14755	465	17	3		3	SLC45A2	5	33947355	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	195863	33947355	146967905	429	166389											
UGT3A2	167127	broad.mit.edu	37	chr5	36052050	36052050	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcttcaggtgcaagccaaCtgataacttgatatgatttt	8	7	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36052050	A	A	36052050	3	1	214	1	0	0	0	0	1	0	0	0	17090	565	20	3	1358	3	UGT3A2	5	36052050	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2104695	36052050	144863210	430	166390											
RICTOR	253260	broad.mit.edu	37	chr5	39074222	39074222	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccgcgttacctcgggtcaGatccagcgggacgttctcct	11	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39074222	C	C	39074222	3	2	214	1	0	0	0	0	1	0	0	0	13467	933	33	4	5186	4	RICTOR	5	39074222	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3022172	39074222	141841038	431	166391											
C9	735	broad.mit.edu	37	chr5	39315949	39315949	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaccgaaaactacccttGccatgtaaagaaattgagga	8	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39315949	T	T	39315949	2	4	214	1	0	0	0	0	0	0	0	1	2469	1306	46	3		3	C9	5	39315949	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	241727	39315949	141599311	432	166392											
PTGER4	5734	broad.mit.edu	37	chr5	40692421	40692421	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggcctgcccctaaggggAgctccctgcaagtcacattt	11	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40692421	G	G	40692421	3	3	214	1	0	0	0	0	1	0	0	0	12851	304	11	5	1414	5	PTGER4	5	40692421	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	1376472	40692421	140222839	433	166393											
C7	730	broad.mit.edu	37	chr5	40937517	40937517	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtgctcttcatttgaactCtctcaaagaagtgtttaagt	7	8	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40937517	G	G	40937517	1	3	214	0	1	0	0	0	0	0	0	0	2400	928	32	4		4	C7	5	40937517	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	245096	40937517	139977743	434	166394											
OXCT1	5019	broad.mit.edu	37	chr5	41805607	41805607	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaagaggtctaatagcCtgatcaatatgggaaaagca	10	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41805607	A	A	41805607	1	1	214	0	1	0	0	0	0	0	0	0	11423	696	24	2		2	OXCT1	5	41805607	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	868090	41805607	139109653	435	166395											
NNT	23530	broad.mit.edu	37	chr5	43615931	43615931	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatttatatttataatctgtGacttgattttttccccaggt	5	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43615931	T	T	43615931	1	4	214	0	1	0	0	0	0	0	0	0	10605	1305	45	3		3	NNT	5	43615931	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1810324	43615931	137299329	436	166396											
FST	10468	broad.mit.edu	37	chr5	52781494	52781494	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagttatacctagaacacaaGagcgctttttatctaatttc	5	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52781494	C	C	52781494	1	2	214	0	1	0	0	0	0	0	0	0	6136	957	33	4		4	FST	5	52781494	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	9165563	52781494	128133766	437	166397											
SKIV2L2	23517	broad.mit.edu	37	chr5	54640386	54640386	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acacagattatcggcccactCcattgcaacactacattttt	4	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54640386	G	G	54640386	3	3	214	1	0	0	0	0	1	0	0	0	14473	855	30	4	977	4	SKIV2L2	5	54640386	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1858892	54640386	126274874	438	166398											
DEPDC1B	55789	broad.mit.edu	37	chr5	59934549	59934549	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gattcaatatcagtgatgtaGatatatgttcattatattcc	6	5	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59934549	C	C	59934549	1	2	214	0	1	0	0	0	0	0	0	0	4480	957	33	4		4	DEPDC1B	5	59934549	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5294163	59934549	120980711	439	166399											
IPO11	51194	broad.mit.edu	37	chr5	61923142	61923142	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggagtttttgcaaggattCtaagagcacatgacatgtgg	12	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61923142	T	T	61923142	2	4	214	1	0	0	0	0	0	0	0	1	7863	912	32	4		4	IPO11	5	61923142	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1988593	61923142	118992118	440	166400											
HTR1A	3350	broad.mit.edu	37	chr5	63256905	63256905	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctcggaatatgcgcccataGagaaccagcatgagcagcag	12	11	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63256905	C	C	63256905	2	2	214	1	0	0	0	0	0	0	0	1	7506	929	33	4		4	HTR1A	5	63256905	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1333763	63256905	117658355	441	166401											
ADAMTS6	11174	broad.mit.edu	37	chr5	64748563	64748563	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacactcaaaatgtaatgttCaatgtctttgcggccatggt	8	9	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64748563	G	G	64748563	3	3	214	1	0	0	0	0	1	0	0	0	270	835	29	4	2623	4	ADAMTS6	5	64748563	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1491658	64748563	116166697	442	166402											
TRIM23	373	broad.mit.edu	37	chr5	64907413	64907414	+	Intron	DEL	AA	-	-													ctacagtgatccaactgattAataattaaattcataccttg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	64907414	-	-	64907413	6	5	214	0	1	1	0	1	0	0	0	0	16621	377	13	0		0	TRIM23	5	64907413	Intron	DEL	AA	TCGA-75-5126-01A-01D-1753-08	158850	64907413	116007847	443	166403											
MAST4	375449	broad.mit.edu	37	chr5	66055638	66055638	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgaagtataaaagacagctGagtgaggatggaagacagct	13	5	0	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66055638	C	C	66055638	2	2	214	1	0	0	0	0	0	0	0	1	9419	1277	45	4		4	MAST4	5	66055638	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1148225	66055638	114859622	444	166404											
PIK3R1	5295	broad.mit.edu	37	chr5	67584462	67584462	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgccgggaacaggctGgggggaggtgcgggggcttg	22	9	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67584462	A	A	67584462	1	1	214	0	1	0	0	0	0	0	0	0	12013	1363	47	4		4	PIK3R1	5	67584462	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1528824	67584462	113330798	445	166405											
AGGF1	55109	broad.mit.edu	37	chr5	76357715	76357715	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaacgttgccttaagtgctAagaatatagtagaaagcaaa	8	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76357715	T	T	76357715	1	4	214	0	1	0	0	0	0	0	0	0	382	377	13	5		5	AGGF1	5	76357715	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	8773253	76357715	104557545	446	166406											
PDE8B	8622	broad.mit.edu	37	chr5	76709008	76709008	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttaaactgttctgaaacCactcttcgggcctggttcca	7	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76709008	T	T	76709008	2	4	214	1	0	0	0	0	0	0	0	1	11748	581	21	4		4	PDE8B	5	76709008	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	351293	76709008	104206252	447	166407											
OTP	23440	broad.mit.edu	37	chr5	76932657	76932657	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcgtacctgcactcgggActcggtcagcccgatacgca	10	17	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76932657	G	G	76932657	3	3	214	1	0	0	0	0	1	0	0	0	11404	275	10	5	549	5	OTP	5	76932657	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	223649	76932657	103982603	448	166408											
AP3B1	8546	broad.mit.edu	37	chr5	77409608	77409608	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttttgagttcctcttggcTgttcttttgttttctaggcc	9	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77409608	A	A	77409608	2	1	214	1	0	0	0	0	0	0	0	1	746	1567	55	5		5	AP3B1	5	77409608	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	476951	77409608	103505652	449	166409											
ARSB	411	broad.mit.edu	37	chr5	78076130	78076130	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaagggccaagtgaacCcaggttgggataacaaatga	13	6	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78076130	A	A	78076130	1	1	214	0	1	0	0	0	0	0	0	0	992	638	22	2		2	ARSB	5	78076130	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	666522	78076130	102839130	450	166410											
RASGRF2	5924	broad.mit.edu	37	chr5	80381788	80381788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagcaagttagtctcttGtggaaacctcctgtatatgt	9	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80381788	T	T	80381788	1	4	214	0	1	0	0	0	0	0	0	0	13181	1392	48	3		3	RASGRF2	5	80381788	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2305658	80381788	100533472	451	166411											
ACOT12	134526	broad.mit.edu	37	chr5	80631677	80631677	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccacgtgcttttcaaccCaaacagataaaacatcatgc	4	13	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80631677	A	A	80631677	3	1	214	1	0	0	0	0	1	0	0	0	150	595	21	2	511	2	ACOT12	5	80631677	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	249889	80631677	100283583	452	166412											
RPS23	6228	broad.mit.edu	37	chr5	81573446	81573446	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcaattactttcaaaacaaGaattcgtaagttcatgtctc	5	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81573446	C	C	81573446	1	2	214	0	1	0	0	0	0	0	0	0	13745	957	33	4		4	RPS23	5	81573446	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	941769	81573446	99341814	453	166413											
ATP6AP1L	92270	broad.mit.edu	37	chr5	81601413	81601413	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatgcttgactctgcggaGgtagggggccggggggtgtc	19	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81601413	T	T	81601413	1	4	214	0	1	0	0	0	0	0	0	0	1170	1015	35	2		2	ATP6AP1L	5	81601413	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	27967	81601413	99313847	454	166414											
EDIL3	10085	broad.mit.edu	37	chr5	83360668	83360668	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccacgaaacacctgtGtaaaaacagtttaaaattat	5	7	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83360668	T	T	83360668	1	4	214	0	1	0	0	0	0	0	0	0	4955	1392	48	3		3	EDIL3	5	83360668	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1759255	83360668	97554592	455	166415											
MBLAC2	153364	broad.mit.edu	37	chr5	89770088	89770088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgcctagagacttgtgggCgtaccactcgagcgccgaca	12	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89770088	A	A	89770088	3	1	214	1	0	0	0	0	1	0	0	0	9445	768	27	3	825	3	MBLAC2	5	89770088	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6409420	89770088	91145172	456	166416											
RHOBTB3	22836	broad.mit.edu	37	chr5	95103984	95103984	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgattattccctactgaGgtatgtagattaatactacc	7	7	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95103984	T	T	95103984	1	4	214	0	1	0	0	0	0	0	0	0	13444	1015	35	2		2	RHOBTB3	5	95103984	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5333896	95103984	85811276	457	166417											
RHOBTB3	22836	broad.mit.edu	37	chr5	95104730	95104730	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gattacccagtctttccgcaGacgagaccaggttactggga	11	11	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95104730	T	T	95104730	1	4	214	0	1	0	0	0	0	0	0	0	13444	957	33	3		3	RHOBTB3	5	95104730	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	746	95104730	85810530	458	166418											
PCSK1	5122	broad.mit.edu	37	chr5	95728688	95728688	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgaatatttccaacttGggaccacacacttattttaa	5	9	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95728688	T	T	95728688	1	4	214	0	1	0	0	0	0	0	0	0	11694	1363	47	2		2	PCSK1	5	95728688	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	623958	95728688	85186572	459	166419											
MAN2A1	4124	broad.mit.edu	37	chr5	109155485	109155485	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtataagaataaagtagaagAtagcggaattttcaccataa	8	4	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109155485	G	G	109155485	3	3	214	1	0	0	0	0	1	0	0	0	9306	333	12	5	2279	5	MAN2A1	5	109155485	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	13426797	109155485	71759775	460	166420											
CDO1	1036	broad.mit.edu	37	chr5	115152132	115152132	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgcgcgtctcactgctgGgctgcggtggaggagctgag	19	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115152132	A	A	115152132	1	1	214	0	1	0	0	0	0	0	0	0	3199	1247	43	4		4	CDO1	5	115152132	5'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	5996647	115152132	65763128	461	166421											
SEMA6A	57556	broad.mit.edu	37	chr5	115783374	115783374	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acagccacgtctttgcgccgAtgatcacagacgcagtagac	10	13	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115783374	C	C	115783374	3	2	214	1	0	0	0	0	1	0	0	0	14152	330	12	5	1068	5	SEMA6A	5	115783374	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	631242	115783374	65131886	462	166422											
DTWD2	285605	broad.mit.edu	37	chr5	118183685	118183685	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctaacacagaagattctacTtgtcacatgagttacaaatt	5	8	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118183685	A	A	118183685	1	1	214	0	1	0	0	0	0	0	0	0	4832	1624	56	5		5	DTWD2	5	118183685	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	2400311	118183685	62731575	463	166423											
MEGF10	84466	broad.mit.edu	37	chr5	126791128	126791128	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatataattcaagtaacTgctccctaagcagttctgag	7	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126791128	C	C	126791128	3	2	214	1	0	0	0	0	1	0	0	0	9553	1580	55	5	3151	5	MEGF10	5	126791128	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	8607443	126791128	54124132	464	166424											
FBN2	2201	broad.mit.edu	37	chr5	127595411	127595411	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtggttgttgaggggctgGatggcgggccttagttccag	18	6	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127595411	T	T	127595411	2	4	214	1	0	0	0	0	0	0	0	1	5760	1164	41	3		3	FBN2	5	127595411	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	804283	127595411	53319849	465	166425											
FBN2	2201	broad.mit.edu	37	chr5	127648325	127648325	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcagctttgtacttaCtgctattgacaggggggcat	10	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127648325	A	A	127648325	5	1	214	1	0	0	0	0	0	0	1	0	5760	579	20	3	3974	3	FBN2	5	127648325	Splice_Site	SNP	C	TCGA-75-5126-01A-01D-1753-08	52914	127648325	53266935	466	166426											
FBN2	2201	broad.mit.edu	37	chr5	127681105	127681105	+	Frame_Shift_Del	DEL	C	-	-													ggttagcaaagccagccccgCgggggcacagcgtctcgtat							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127681105	-	-	127681105	7	5	214	1	0	1	0	1	0	0	0	0	5760	768	27	0	5745	0	FBN2	5	127681105	Frame_Shift_Del	DEL	C	TCGA-75-5126-01A-01D-1753-08	32780	127681105	53234155	467	166427											
FBN2	2201	broad.mit.edu	37	chr5	127782300	127782300	+	Splice_Site	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcctggcattcatcaacatCtgcaagaagaaaacattttg	7	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127782300	G	G	127782300	5	3	214	1	0	0	0	0	0	0	1	0	5760	927	32	4	8148	4	FBN2	5	127782300	Splice_Site	SNP	C	TCGA-75-5126-01A-01D-1753-08	101195	127782300	53132960	468	166428											
RAPGEF6	51735	broad.mit.edu	37	chr5	131034600	131034600	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcattatggaaagctgggCaatatgtacctgaattcatt	9	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131034600	G	G	131034600	1	3	214	0	1	0	0	0	0	0	0	0	13156	725	25	4		4	RAPGEF6	5	131034600	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3252300	131034600	49880660	469	166429											
FSTL4	23105	broad.mit.edu	37	chr5	132569153	132569153	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaacagctgctcgtggccgGaagcatggcaggtgtaattg	16	8	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132569153	T	T	132569153	3	4	214	1	0	0	0	0	1	0	0	0	6139	1174	41	3	1593	3	FSTL4	5	132569153	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1534553	132569153	48346107	470	166430											
PCBD2	84105	broad.mit.edu	37	chr5	134303795	134303795	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaagtaaatattatctatCtccattgcctgttaagaaat	4	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134303795	T	T	134303795	1	4	214	0	1	0	0	0	0	0	0	0	11593	928	32	4		4	PCBD2	5	134303795	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1734642	134303795	46611465	471	166431											
KDM3B	51780	broad.mit.edu	37	chr5	137727215	137727215	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccccaaattgtcccgagaaGagccttctaatcctttcctg	6	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137727215	C	C	137727215	3	2	214	1	0	0	0	0	1	0	0	0	8197	943	33	4	1924	4	KDM3B	5	137727215	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3423420	137727215	43188045	472	166432											
PAIP2	51247	broad.mit.edu	37	chr5	138700367	138700367	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagatctcccacaaactatgGaccaaatccaagaccagttt	6	12	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138700367	T	T	138700367	3	4	214	1	0	0	0	0	1	0	0	0	11491	1174	41	3	259	3	PAIP2	5	138700367	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	973152	138700367	42214893	473	166433											
TMEM173	340061	broad.mit.edu	37	chr5	138858127	138858127	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaagaagttattcctgcTaaccctatctcccacctgat	5	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138858127	C	C	138858127	1	2	214	0	1	0	0	0	0	0	0	0	16212	1537	53	5		5	TMEM173	5	138858127	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	157760	138858127	42057133	474	166434											
PSD2	84249	broad.mit.edu	37	chr5	139192997	139192997	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcacccagtacagcagcctcGactccctagacgggctgagc	11	16	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139192997	T	T	139192997	3	4	214	1	0	0	0	0	1	0	0	0	12753	1058	37	3	481	3	PSD2	5	139192997	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	334870	139192997	41722263	475	166435											
HARS	3035	broad.mit.edu	37	chr5	140054305	140054305	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acggagcttgatgaccccatCcttgagttcctgctcgccga	10	14	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140054305	T	T	140054305	3	4	214	1	0	0	0	0	1	0	0	0	7025	855	30	4	120	4	HARS	5	140054305	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	861308	140054305	40860955	476	166436											
PCDHA1	56147	broad.mit.edu	37	chr5	140166214	140166214	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttgatcgccgacaggccGctgcaggttttccatgtgga	14	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140166214	A	A	140166214	2	1	214	1	0	0	0	0	0	0	0	1	11613	1074	38	4		4	PCDHA1	5	140166214	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	111909	140166214	40749046	477	166437											
PCDHA3	56145	broad.mit.edu	37	chr5	140183206	140183206	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttatttattctttccaaaAtgtctttgtttttcattcct	2	7	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140183206	T	T	140183206	1	4	214	0	1	0	0	0	0	0	0	0	11619	98	4	5		5	PCDHA3	5	140183206	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	16992	140183206	40732054	478	166438											
PCDHA4	56144	broad.mit.edu	37	chr5	140187260	140187260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcggatgcagatatcgGggagaacgccctgctcactt	12	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140187260	T	T	140187260	3	4	214	1	0	0	0	0	1	0	0	0	11620	1232	43	2	490	2	PCDHA4	5	140187260	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4054	140187260	40728000	479	166439											
PCDHA6	56142	broad.mit.edu	37	chr5	140207688	140207688	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttgacatggtgtttacCccggaggatagattgggaaa	13	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140207688	A	A	140207688	2	1	214	1	0	0	0	0	0	0	0	1	11622	610	22	2		2	PCDHA6	5	140207688	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	20428	140207688	40707572	480	166440											
PCDHA6	56142	broad.mit.edu	37	chr5	140209902	140209902	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcccacgctggtgtgctcCagcgcagtggggagctggtc	16	12	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140209902	A	A	140209902	2	1	214	1	0	0	0	0	0	0	0	1	11622	581	21	2		2	PCDHA6	5	140209902	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	2214	140209902	40705358	481	166441											
PCDHA9	9752	broad.mit.edu	37	chr5	140229524	140229524	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacggtgtctgcgcgggacGctgacgcgcaggagaacgcc	16	13	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140229524	C	C	140229524	3	2	214	1	0	0	0	0	1	0	0	0	11625	1087	38	4	1446	4	PCDHA9	5	140229524	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	19622	140229524	40685736	482	166442											
PCDHB1	29930	broad.mit.edu	37	chr5	140433275	140433275	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatttctctaacaacctGgtacaaggacaaggcaatgg	9	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140433275	A	A	140433275	2	1	214	1	0	0	0	0	0	0	0	1	11628	1335	47	4		4	PCDHB1	5	140433275	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	203751	140433275	40481985	483	166443											
PCDHB4	56131	broad.mit.edu	37	chr5	140503371	140503371	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggacggcgactcgggccaGaacgcctggctgtcgtacca	15	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140503371	T	T	140503371	3	4	214	1	0	0	0	0	1	0	0	0	11638	933	33	3	1793	3	PCDHB4	5	140503371	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	70096	140503371	40411889	484	166444											
PCDHB11	56125	broad.mit.edu	37	chr5	140580428	140580429	+	Missense_Mutation	DNP	CC	GA	GA													gtccaatcccagaaaatacgCcagagaccgtggttatggtt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	140580429	GA	GA	140580428	3	3	214	1	0	0	0	0	1	0	0	0	11630	739	26	4	1083	4	PCDHB11	5	140580428	Missense_Mutation	DNP	CC	TCGA-75-5126-01A-01D-1753-08	77057	140580428	40334832	485	166445											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712427	140712427	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaagtcacgtctgctaCaggcttcgggaggcggctta	14	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140712427	A	A	140712427	3	1	214	1	0	0	0	0	1	0	0	0	11644	479	17	3	2178	3	PCDHGA1	5	140712427	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	131999	140712427	40202833	486	166446											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720491	140720491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatccaggaccacggccaGccccctctctccgccactgt	8	21	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140720491	T	T	140720491	3	4	214	1	0	0	0	0	1	0	0	0	11648	962	34	3	1955	3	PCDHGA2	5	140720491	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	8064	140720491	40194769	487	166447											
PCDHGA6	56109	broad.mit.edu	37	chr5	140754602	140754602	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgagtttttatgagctgGgtgttgaagcccgggatggg	16	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140754602	T	T	140754602	3	4	214	1	0	0	0	0	1	0	0	0	11652	1232	43	2	954	2	PCDHGA6	5	140754602	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	34111	140754602	40160658	488	166448											
PCDHGA6	56109	broad.mit.edu	37	chr5	140755009	140755009	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacaacccgcccaccttcccCcattcatcctactcagtcta	3	20	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140755009	G	G	140755009	2	3	214	1	0	0	0	0	0	0	0	1	11652	610	22	4		4	PCDHGA6	5	140755009	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	407	140755009	40160251	489	166449											
PCDHGA7	56108	broad.mit.edu	37	chr5	140764324	140764324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaggactctttgcggttGggctgtacacgggcgaggtg	17	9	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140764324	T	T	140764324	3	4	214	1	0	0	0	0	1	0	0	0	11653	1348	47	2	1860	2	PCDHGA7	5	140764324	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	9315	140764324	40150936	490	166450											
HDAC3	8841	broad.mit.edu	37	chr5	141014298	141014298	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagtaggccccccttgagatCttcccactgctgccaaaaga	8	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141014298	G	G	141014298	1	3	214	0	1	0	0	0	0	0	0	0	7075	928	32	4		4	HDAC3	5	141014298	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	249974	141014298	39900962	491	166451											
SH3TC2	79628	broad.mit.edu	37	chr5	148406269	148406269	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgcctcagggtttggggaCacagagctgtagaaatggca	14	8	1	2	rs145528276	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148406269	T	T	148406269	2	4	214	1	0	0	0	0	0	0	0	1	14375	465	17	4		4	SH3TC2	5	148406269	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	7391971	148406269	32508991	492	166452											
ARSI	340075	broad.mit.edu	37	chr5	149678006	149678006	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtgtcgaagccccgacGggtgggcagacactccttcc	14	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149678006	A	A	149678006	3	1	214	1	0	0	0	0	1	0	0	0	998	1116	39	4	1232	4	ARSI	5	149678006	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1271737	149678006	31237254	493	166453											
RPS14	6208	broad.mit.edu	37	chr5	149826406	149826406	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agtttgatgtgtagggcggtGatacccagctccttgcacct	12	10	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149826406	A	A	149826406	2	1	214	1	0	0	0	0	0	0	0	1	13735	1280	45	4		4	RPS14	5	149826406	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	148400	149826406	31088854	494	166454											
CCDC69	26112	broad.mit.edu	37	chr5	150565160	150565160	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctacctccctcctccccattCtgccagcaactcattgttgg	5	18	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150565160	T	T	150565160	1	4	214	0	1	0	0	0	0	0	0	0	2869	928	32	4		4	CCDC69	5	150565160	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	738754	150565160	30350100	495	166455											
G3BP1	10146	broad.mit.edu	37	chr5	151173720	151173720	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttctgttggcattgcagGggtctgttgcaaataaattc	10	7	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151173720	T	T	151173720	3	4	214	1	0	0	0	0	1	0	0	0	6201	1246	43	2	366	2	G3BP1	5	151173720	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	608560	151173720	29741540	496	166456											
SAP30L	79685	broad.mit.edu	37	chr5	153835564	153835564	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagactggaccagaaatcGgagggtggcaagcagcttga	15	7	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153835564	T	T	153835564	2	4	214	1	0	0	0	0	0	0	0	1	13947	1103	39	1		1	SAP30L	5	153835564	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2661844	153835564	27079696	497	166457											
ITK	3702	broad.mit.edu	37	chr5	156608074	156608074	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctcgaactttaaagtccGcttctttgtgttaaccaaag	6	11	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156608074	T	T	156608074	3	4	214	1	0	0	0	0	1	0	0	0	7979	1087	38	3	88	3	ITK	5	156608074	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2772510	156608074	24307186	498	166458											
RNF145	153830	broad.mit.edu	37	chr5	158634607	158634607	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtaggcctcactgaaaatGttaagagcacaaagctagag	11	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158634607	T	T	158634607	1	4	214	0	1	0	0	0	0	0	0	0	13558	1392	48	3		3	RNF145	5	158634607	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2026533	158634607	22280653	499	166459											
ATP10B	23120	broad.mit.edu	37	chr5	160016544	160016544	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaattcagaaatttgagtAtagtcaatgggcaggagcac	10	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160016544	G	G	160016544	1	3	214	0	1	0	0	0	0	0	0	0	1121	464	16	5		5	ATP10B	5	160016544	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	1381937	160016544	20898716	500	166460											
HMMR	3161	broad.mit.edu	37	chr5	162900478	162900478	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaattttaagccttaaGcagtctcttgaggagaatat	9	5	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162900478	A	A	162900478	2	1	214	1	0	0	0	0	0	0	0	1	7309	962	34	4		4	HMMR	5	162900478	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2883934	162900478	18014782	501	166461											
ODZ2	57451	broad.mit.edu	37	chr5	167626894	167626894	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaagaaatcgagctccCtggttccaatgtgaaacttc	8	10	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167626894	A	A	167626894	3	1	214	1	0	0	0	0	1	0	0	0	10930	681	24	2	3227	2	ODZ2	5	167626894	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4726416	167626894	13288366	502	166462											
WWC1	23286	broad.mit.edu	37	chr5	167833149	167833149	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtgcttttcccctggggaGaccctgtccctcaccctatc	8	17	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167833149	T	T	167833149	1	4	214	0	1	0	0	0	0	0	0	0	17538	957	33	3		3	WWC1	5	167833149	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	206255	167833149	13082111	503	166463											
LCP2	3937	broad.mit.edu	37	chr5	169685927	169685927	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atattaagctatcatcaaaaTacaattcttaaaataaaaac	1	6	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169685927	A	A	169685927	1	1	214	0	1	0	0	0	0	0	0	0	8764	1421	49	5		5	LCP2	5	169685927	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1852778	169685927	11229333	504	166464											
NPM1	4869	broad.mit.edu	37	chr5	170819787	170819787	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagtatatctggaaagcgGtctgcccctggaggtggtag	14	7	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170819787	T	T	170819787	2	4	214	1	0	0	0	0	0	0	0	1	10682	1248	44	3		3	NPM1	5	170819787	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1133860	170819787	10095473	505	166465											
CPLX2	10814	broad.mit.edu	37	chr5	175306905	175306905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaaagcagccctggagCagccctgcgaggggagcctg	17	11	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175306905	A	A	175306905	3	1	214	1	0	0	0	0	1	0	0	0	3837	711	25	3	272	3	CPLX2	5	175306905	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4487118	175306905	5608355	506	166466											
COL23A1	91522	broad.mit.edu	37	chr5	177675175	177675175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgggggaagccctgacCcccccatacccccttaccag	10	17	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177675175	A	A	177675175	1	1	214	0	1	0	0	0	0	0	0	0	3714	638	22	2		2	COL23A1	5	177675175	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2368270	177675175	3240085	507	166467											
ZNF454	285676	broad.mit.edu	37	chr5	178392158	178392158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgtaaggaatgtggcaaGgccttctcagtgagctcctc	12	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178392158	T	T	178392158	3	4	214	1	0	0	0	0	1	0	0	0	18050	991	35	2	767	2	ZNF454	5	178392158	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	716983	178392158	2523102	508	166468											
HNRNPH1	3187	broad.mit.edu	37	chr5	179048121	179048121	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctttagataagctaggaaGagctgccacaaactccctta	8	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179048121	A	A	179048121	1	1	214	0	1	0	0	0	0	0	0	0	7333	957	33	4		4	HNRNPH1	5	179048121	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	655963	179048121	1867139	509	166469											
SNRNP48	154007	broad.mit.edu	37	chr6	7595342	7595342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttataatcaaagtaagtgGcattacagtttaagtgaatt	8	3	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7595342	T	T	7595342	1	4	214	0	1	0	0	0	0	0	0	0	14971	1218	42	3		3	SNRNP48	6	7595342	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08		7595342	163519725	510	166470											
FAM65B	9750	broad.mit.edu	37	chr6	24850199	24850199	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctagcagagagagtgggagaGaataggccttacatcacagc	13	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24850199	C	C	24850199	1	2	214	0	1	0	0	0	0	0	0	0	5651	957	33	4		4	FAM65B	6	24850199	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	17254857	24850199	146264868	511	166471											
HIST1H1T	3010	broad.mit.edu	37	chr6	26108121	26108121	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagcagcggccaatgccttCttgagcgcaaccaaagacat	9	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26108121	G	G	26108121	3	3	214	1	0	0	0	0	1	0	0	0	7194	912	32	4	426	4	HIST1H1T	6	26108121	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1257922	26108121	145006946	512	166472											
HIST1H2AC	8334	broad.mit.edu	37	chr6	26124671	26124671	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagctggccggcaacgcgGctcgcgacaacaagaagact	14	12	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26124671	A	A	26124671	3	1	214	1	0	0	0	0	1	0	0	0	7197	1203	42	4	213	4	HIST1H2AC	6	26124671	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	16550	26124671	144990396	513	166473											
OR2B2	81697	broad.mit.edu	37	chr6	27879654	27879654	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctaaagccactaatccaGgatgcagctgccaactggaa	9	11	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27879654	T	T	27879654	2	4	214	1	0	0	0	0	0	0	0	1	11083	987	35	2		2	OR2B2	6	27879654	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1754983	27879654	143235413	514	166474											
ZKSCAN3	80317	broad.mit.edu	37	chr6	28327344	28327344	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaagctagagtgaggcctGagtactgccttggcctagga	15	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28327344	T	T	28327344	1	4	214	0	1	0	0	0	0	0	0	0	17814	1305	45	3		3	ZKSCAN3	6	28327344	5'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	447690	28327344	142787723	515	166475											
GPX5	2880	broad.mit.edu	37	chr6	28499572	28499572	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagaactaaatgcactccagGaggagctgaagccctatggt	11	10	0	2	rs149572375		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28499572	C	C	28499572	3	2	214	1	0	0	0	0	1	0	0	0	6809	1175	41	4	269	4	GPX5	6	28499572	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	172228	28499572	142615495	516	166476											
UBD	10537	broad.mit.edu	37	chr6	29523866	29523866	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggtgcctctttgcctcatCacctgactccacaagaaaca	7	14	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29523866	G	G	29523866	3	3	214	1	0	0	0	0	1	0	0	0	16969	826	29	4	212	4	UBD	6	29523866	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1024294	29523866	141591201	517	166477											
TRIM15	89870	broad.mit.edu	37	chr6	30134927	30134927	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aattattaattcagtcacctCtatccacccattcttctccc	1	15	5	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30134927	A	A	30134927	1	1	214	0	1	0	0	0	0	0	0	0	16614	928	32	3		3	TRIM15	6	30134927	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	611061	30134927	140980140	518	166478											
TRIM15	89870	broad.mit.edu	37	chr6	30140215	30140215	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcggcccgggggctccCtgtgcccgcgtgaggcgaga	19	13	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30140215	A	A	30140215	1	1	214	0	1	0	0	0	0	0	0	0	16614	696	24	2		2	TRIM15	6	30140215	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	5288	30140215	140974852	519	166479											
BAT5	7920	broad.mit.edu	37	chr6	31659341	31659341	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccccacctctgggctcTctgctccctcttaccagctt	5	20	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31659341	C	C	31659341	1	2	214	0	1	0	0	0	0	0	0	0	1329	1566	54	5		5	BAT5	6	31659341	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1519126	31659341	139455726	520	166480											
PRRT1	80863	broad.mit.edu	37	chr6	32117104	32117104	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacggccagggagatgaaGgagaagttccgggcctcgcg	16	12	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32117104	T	T	32117104	2	4	214	1	0	0	0	0	0	0	0	1	12715	987	35	2		2	PRRT1	6	32117104	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	457763	32117104	138997963	521	166481											
PI16	221476	broad.mit.edu	37	chr6	36929364	36929364	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggggggaaccctggagatGgagagggggaaggcacaggc	21	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36929364	T	T	36929364	1	4	214	0	1	0	0	0	0	0	0	0	11964	1363	47	2		2	PI16	6	36929364	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4812260	36929364	134185703	522	166482											
DNAH8	1769	broad.mit.edu	37	chr6	38750806	38750806	+	Frame_Shift_Del	DEL	G	-	-													tcagacattttatcaagtccGgacggtaaagctgtcatccg					rs141715565		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38750806	-	-	38750806	7	5	214	1	0	1	0	1	0	0	0	0	4647	1103	39	0	1685	0	DNAH8	6	38750806	Frame_Shift_Del	DEL	G	TCGA-75-5126-01A-01D-1753-08	1821442	38750806	132364261	523	166483											
DNAH8	1769	broad.mit.edu	37	chr6	38854628	38854628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgtacagcttggacaagcCtggagacttcactactattg	9	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38854628	A	A	38854628	3	1	214	1	0	0	0	0	1	0	0	0	4647	681	24	2	7880	2	DNAH8	6	38854628	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	103822	38854628	132260439	524	166484											
TREM1	54210	broad.mit.edu	37	chr6	41243988	41243988	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgcgggagacaagaggctGaacgctactgctggcaaagt	14	10	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41243988	C	C	41243988	1	2	214	0	1	0	0	0	0	0	0	0	16594	1305	45	4		4	TREM1	6	41243988	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2389360	41243988	129871079	525	166485											
RPL7L1	285855	broad.mit.edu	37	chr6	42851245	42851245	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatcattcctacatgattcCtggcggcagaaacgtgacaa	9	10	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42851245	T	T	42851245	2	4	214	1	0	0	0	0	0	0	0	1	13712	668	24	4		4	RPL7L1	6	42851245	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1607257	42851245	128263822	526	166486											
CUL9	23113	broad.mit.edu	37	chr6	43182863	43182863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcctcctggaaccctggGccacactgttgctgggggtg	13	12	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43182863	T	T	43182863	3	4	214	1	0	0	0	0	1	0	0	0	4094	1203	42	3	5849	3	CUL9	6	43182863	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	331618	43182863	127932204	527	166487											
TMEM63B	55362	broad.mit.edu	37	chr6	44107259	44107259	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgtgcactacctgtcctttCagcggcacatcatcgggctg	10	15	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44107259	T	T	44107259	4	4	214	1	0	0	0	0	0	1	0	0	16314	827	29	4	485	4	TMEM63B	6	44107259	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	924396	44107259	127007808	528	166488											
GPR116	221395	broad.mit.edu	37	chr6	46824577	46824577	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcacttcagacttttctaGaaacatgaaactgtcattgc	6	9	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46824577	C	C	46824577	1	2	214	0	1	0	0	0	0	0	0	0	6698	957	33	4		4	GPR116	6	46824577	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2717318	46824577	124290490	529	166489											
CRISP3	10321	broad.mit.edu	37	chr6	49701585	49701585	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaggaacagaccactcatGaggaaagcaataaagcatgc	10	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49701585	T	T	49701585	1	4	214	0	1	0	0	0	0	0	0	0	3913	1305	45	3		3	CRISP3	6	49701585	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2877008	49701585	121413482	530	166490											
PGK2	5232	broad.mit.edu	37	chr6	49753978	49753978	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaaacccatccagccaggaGatatgccagatgctacagtg	9	13	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49753978	A	A	49753978	3	1	214	1	0	0	0	0	1	0	0	0	11886	942	33	4	334	4	PGK2	6	49753978	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	52393	49753978	121361089	531	166491											
PKHD1	5314	broad.mit.edu	37	chr6	51612989	51612989	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagaagccagagattctgGtacagttgtcaagtccactt	9	10	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51612989	T	T	51612989	3	4	214	1	0	0	0	0	1	0	0	0	12066	1261	44	3	2878	3	PKHD1	6	51612989	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1859011	51612989	119502078	532	166492											
GCLC	2729	broad.mit.edu	37	chr6	53363677	53363677	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaaaataaggctataattCatttcatcagttatgacact	4	7	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53363677	T	T	53363677	3	4	214	1	0	0	0	0	1	0	0	0	6357	826	29	4	126	4	GCLC	6	53363677	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1750688	53363677	117751390	533	166493											
HCRTR2	3062	broad.mit.edu	37	chr6	55120106	55120106	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcaggccatcgtcatggAgtgcagcaccgtgttcccag	11	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55120106	G	G	55120106	3	3	214	1	0	0	0	0	1	0	0	0	7069	304	11	5	585	5	HCRTR2	6	55120106	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	1756429	55120106	115994961	534	166494											
GFRAL	389400	broad.mit.edu	37	chr6	55198740	55198740	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaaaaatgtatcaataaatCaggtaatattttgttttaag	5	2	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55198740	T	T	55198740	3	4	214	1	0	0	0	0	1	0	0	0	6415	838	29	4	324	4	GFRAL	6	55198740	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	78634	55198740	115916327	535	166495											
COL21A1	81578	broad.mit.edu	37	chr6	56141375	56141375	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttaatgcctttctcctcCtggacatcagagagaacgcc	7	13	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56141375	A	A	56141375	1	1	214	0	1	0	0	0	0	0	0	0	3712	696	24	2		2	COL21A1	6	56141375	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	942635	56141375	114973692	536	166496											
DST	667	broad.mit.edu	37	chr6	56492813	56492813	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataccttctgttgattcaacTgtgtggctagggttttacta	9	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56492813	A	A	56492813	3	1	214	1	0	0	0	0	1	0	0	0	4823	1580	55	5	17408	5	DST	6	56492813	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	351438	56492813	114622254	537	166497											
ZNF451	26036	broad.mit.edu	37	chr6	57012630	57012630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacattggataatttgactGctaacaagccttcatcagct	6	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57012630	T	T	57012630	3	4	214	1	0	0	0	0	1	0	0	0	18049	1319	46	3	1785	3	ZNF451	6	57012630	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	519817	57012630	114102437	538	166498											
LGSN	51557	broad.mit.edu	37	chr6	63990290	63990290	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatattaaatatacagctgTtgtcattgtatccccatgtt	6	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63990290	C	C	63990290	3	2	214	1	0	0	0	0	1	0	0	0	8831	1725	60	5	367	5	LGSN	6	63990290	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	6977660	63990290	107124777	539	166499											
BAI3	577	broad.mit.edu	37	chr6	69348553	69348553	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcattgccatttttacagGccaaatgacataggatgaag	8	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69348553	T	T	69348553	1	4	214	0	1	0	0	0	0	0	0	0	1305	1217	42	3		3	BAI3	6	69348553	5'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	5358263	69348553	101766514	540	166500											
COL19A1	1310	broad.mit.edu	37	chr6	70894644	70894644	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctcaggtatgggaaatatGatttaaaataaaagttataa	8	2	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70894644	T	T	70894644	1	4	214	0	1	0	0	0	0	0	0	0	3708	1305	45	3		3	COL19A1	6	70894644	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1546091	70894644	100220423	541	166501											
RIMS1	22999	broad.mit.edu	37	chr6	72947557	72947557	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaaatgactgacttaggacGacttggtgctttcatcacca	8	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72947557	T	T	72947557	3	4	214	1	0	0	0	0	1	0	0	0	13478	1058	37	3	2086	3	RIMS1	6	72947557	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2052913	72947557	98167510	542	166502											
OOEP	441161	broad.mit.edu	37	chr6	74079496	74079496	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccccgctgggactcagcgGcaccagcatcatcgaccata	10	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74079496	C	C	74079496	3	2	214	1	0	0	0	0	1	0	0	0	10964	1203	42	4	441	4	OOEP	6	74079496	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1131939	74079496	97035571	543	166503											
IBTK	25998	broad.mit.edu	37	chr6	82924239	82924239	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagtcacaagtatctgTgtatataaattgtaaaaggt	7	3	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82924239	C	C	82924239	3	2	214	1	0	0	0	0	1	0	0	0	7546	1696	59	5	2224	5	IBTK	6	82924239	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	8844743	82924239	88190828	544	166504											
TPBG	7162	broad.mit.edu	37	chr6	83075585	83075585	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtctgcgactgccacatgGcagacatggtgacctggctc	14	12	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83075585	A	A	83075585	3	1	214	1	0	0	0	0	1	0	0	0	16518	1203	42	4	909	4	TPBG	6	83075585	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	151346	83075585	88039482	545	166505											
MRAP2	112609	broad.mit.edu	37	chr6	84799294	84799294	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaattgtgtgtgtttggggGagagagagacatagagatag	16	1	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84799294	T	T	84799294	1	4	214	0	1	0	0	0	0	0	0	0	9848	1189	41	3		3	MRAP2	6	84799294	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	1723709	84799294	86315773	546	166506											
GPR63	81491	broad.mit.edu	37	chr6	97246829	97246829	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagtatgcccataaatgagTacagtattaccaggaagggt	11	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97246829	A	A	97246829	3	1	214	1	0	0	0	0	1	0	0	0	6769	1638	57	5	484	5	GPR63	6	97246829	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	12447535	97246829	73868238	547	166507											
C6orf167	253714	broad.mit.edu	37	chr6	97597850	97597850	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctactgtttctaaaatgcTgtaaacctggtaatagtacc	7	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97597850	C	C	97597850	3	2	214	1	0	0	0	0	1	0	0	0	2365	1580	55	5	210	5	C6orf167	6	97597850	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	351021	97597850	73517217	548	166508											
USP45	85015	broad.mit.edu	37	chr6	99936535	99936535	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagaatcttttacatattacAaagctttctgatgactctta	5	7	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99936535	T	T	99936535	1	4	214	0	1	0	0	0	0	0	0	0	17203	145	5	5		5	USP45	6	99936535	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	2338685	99936535	71178532	549	166509											
GRIK2	2898	broad.mit.edu	37	chr6	102376480	102376480	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atagaatatggagcagtagaGgatggtgcaaccatgacttt	12	5	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102376480	T	T	102376480	3	4	214	1	0	0	0	0	1	0	0	0	6840	991	35	2	2108	2	GRIK2	6	102376480	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2439945	102376480	68738587	550	166510											
LIN28B	389421	broad.mit.edu	37	chr6	105474275	105474275	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtcaatacgggtaacaGgacctggtgggagcccctgt	14	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105474275	T	T	105474275	4	4	214	1	0	0	0	0	0	1	0	0	8879	1001	35	2	311	2	LIN28B	6	105474275	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3097795	105474275	65640792	551	166511											
BEND3	57673	broad.mit.edu	37	chr6	107391909	107391909	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagtgacgaggggctgttGctggcgtttgccttctcaaa	14	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107391909	A	A	107391909	2	1	214	1	0	0	0	0	0	0	0	1	1404	1310	46	4		4	BEND3	6	107391909	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1917634	107391909	63723158	552	166512											
SCML4	256380	broad.mit.edu	37	chr6	108067985	108067985	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggcttggacggcctgcTgcagcaccgccgatggccgc	15	15	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108067985	G	G	108067985	3	3	214	1	0	0	0	0	1	0	0	0	14024	1580	55	5	869	5	SCML4	6	108067985	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	676076	108067985	63047082	553	166513											
SEC63	11231	broad.mit.edu	37	chr6	108224056	108224056	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaaagaattaccttcttatGattagaaacccgtctaagat	6	8	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108224056	A	A	108224056	3	1	214	1	0	0	0	0	1	0	0	0	14118	1290	45	4	1121	4	SEC63	6	108224056	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	156071	108224056	62891011	554	166514											
FOXO3	2309	broad.mit.edu	37	chr6	108939443	108939443	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caccaccttcaaattaatatGattgttcttagtcttgactc	4	10	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108939443	C	C	108939443	1	2	214	0	1	0	0	0	0	0	0	0	6084	1305	45	4		4	FOXO3	6	108939443	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	715387	108939443	62175624	555	166515											
WASF1	8936	broad.mit.edu	37	chr6	110424732	110424732	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaaagtgagtaagatcCatccatatgatccacgtatg	10	8	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110424732	G	G	110424732	3	3	214	1	0	0	0	0	1	0	0	0	17379	603	21	4	949	4	WASF1	6	110424732	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1485289	110424732	60690335	556	166516											
CDC40	51362	broad.mit.edu	37	chr6	110522910	110522910	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtaaggtgataagacttaaGcagtttcaattttggcttta	10	4	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110522910	C	C	110522910	1	2	214	0	1	0	0	0	0	0	0	0	3100	986	34	4		4	CDC40	6	110522910	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	98178	110522910	60592157	557	166517											
DDO	8528	broad.mit.edu	37	chr6	110714395	110714395	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagggagcctgaacttggagGacttggccccttacagggaa	14	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110714395	C	C	110714395	2	2	214	1	0	0	0	0	0	0	0	1	4367	1161	41	4		4	DDO	6	110714395	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	191485	110714395	60400672	558	166518											
HDAC2	3066	broad.mit.edu	37	chr6	114279889	114279889	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttgatatactcatcactGtgatattttgtcatttcttc	4	7	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114279889	A	A	114279889	2	1	214	1	0	0	0	0	0	0	0	1	7074	1368	48	4		4	HDAC2	6	114279889	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	3565494	114279889	56835178	559	166519											
KPNA5	3841	broad.mit.edu	37	chr6	117013443	117013443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgttaattatatttttgtGtgtgtgttttaggaagaagt	10	0	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117013443	T	T	117013443	1	4	214	0	1	0	0	0	0	0	0	0	8504	1392	48	3		3	KPNA5	6	117013443	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2733554	117013443	54101624	560	166520											
CLVS2	134829	broad.mit.edu	37	chr6	123377126	123377126	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagactcctacagcatgcCtgtgaaggaagtagagaagg	13	7	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123377126	A	A	123377126	3	1	214	1	0	0	0	0	1	0	0	0	3604	681	24	2	865	2	CLVS2	6	123377126	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6363683	123377126	47737941	561	166521											
MOXD1	26002	broad.mit.edu	37	chr6	132649476	132649476	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgttaaagctttacttctaAgtattaattagaatcatatt	5	5	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132649476	T	T	132649476	1	4	214	0	1	0	0	0	0	0	0	0	9814	87	3	5		5	MOXD1	6	132649476	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	9272350	132649476	38465591	562	166522											
VNN2	8875	broad.mit.edu	37	chr6	133072641	133072641	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacactttgggaccatttggTgcataaataccacttcctgt	7	10	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133072641	A	A	133072641	2	1	214	1	0	0	0	0	0	0	0	1	17310	1683	59	5		5	VNN2	6	133072641	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	423165	133072641	38042426	563	166523											
EYA4	2070	broad.mit.edu	37	chr6	133783725	133783725	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaaaatcatcttactaAttaaatggtttacacattca	5	6	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133783725	G	G	133783725	1	3	214	0	1	0	0	0	0	0	0	0	5374	116	4	5		5	EYA4	6	133783725	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	711084	133783725	37331342	564	166524											
TCF21	6943	broad.mit.edu	37	chr6	134210674	134210674	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagctccaactgcgagaatGggtctccccagaagggccgc	13	13	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134210674	A	A	134210674	3	1	214	1	0	0	0	0	1	0	0	0	15813	1348	47	4	141	4	TCF21	6	134210674	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	426949	134210674	36904393	565	166525											
IL20RA	53832	broad.mit.edu	37	chr6	137332383	137332383	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatatgaatacatgtttaacTgaccattgcaataatggcat	7	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137332383	C	C	137332383	1	2	214	0	1	0	0	0	0	0	0	0	7738	1595	55	5		5	IL20RA	6	137332383	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	3121709	137332383	33782684	566	166526											
OLIG3	167826	broad.mit.edu	37	chr6	137815202	137815202	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgagaccgagttgagacGgctctcctggtggtggtggt	18	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137815202	T	T	137815202	3	4	214	1	0	0	0	0	1	0	0	0	10956	1116	39	1	716	1	OLIG3	6	137815202	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	482819	137815202	33299865	567	166527											
UTRN	7402	broad.mit.edu	37	chr6	144758697	144758697	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattataacaatgtccctttCtaggcttttatgatggaact	6	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144758697	G	G	144758697	1	3	214	0	1	0	0	0	0	0	0	0	17230	928	32	4		4	UTRN	6	144758697	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6943495	144758697	26356370	568	166528											
RAET1L	154064	broad.mit.edu	37	chr6	150342354	150342354	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagagagatcagctctgatCttgacaaattttgcaccccc	8	11	3	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150342354	T	T	150342354	1	4	214	0	1	0	0	0	0	0	0	0	13109	928	32	4		4	RAET1L	6	150342354	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	5583657	150342354	20772713	569	166529											
SYNE1	23345	broad.mit.edu	37	chr6	152501209	152501209	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaaagccaccttctgtacCtgtgaaaagtacacataagc	7	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152501209	T	T	152501209	1	4	214	0	1	0	0	0	0	0	0	0	15564	696	24	4		4	SYNE1	6	152501209	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2158855	152501209	18613858	570	166530											
SYNE1	23345	broad.mit.edu	37	chr6	152679590	152679590	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagcttttcttgttcttgcCccaaccaaacttcaaatgcc	5	14	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152679590	A	A	152679590	3	1	214	1	0	0	0	0	1	0	0	0	15564	623	22	2	16264	2	SYNE1	6	152679590	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	178381	152679590	18435477	571	166531											
SYNE1	23345	broad.mit.edu	37	chr6	152746527	152746527	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaccaaccttttgttaatGatctgtggtaaatctctcca	6	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152746527	C	C	152746527	3	2	214	1	0	0	0	0	1	0	0	0	15564	1280	45	4	21642	4	SYNE1	6	152746527	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	66937	152746527	18368540	572	166532											
RBM16	22828	broad.mit.edu	37	chr6	155153150	155153150	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacaagcaattctggaattCtgggagtccaaagaccaaat	9	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155153150	G	G	155153150	3	3	214	1	0	0	0	0	1	0	0	0	13226	912	32	4	2515	4	RBM16	6	155153150	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2406623	155153150	15961917	573	166533											
IGF2R	3482	broad.mit.edu	37	chr6	160505029	160505029	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tatttaagtgtgatgaagatGaggacattgggaggccacaa	13	4	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160505029	A	A	160505029	3	1	214	1	0	0	0	0	1	0	0	0	7646	1291	45	4	6039	4	IGF2R	6	160505029	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5351879	160505029	10610038	574	166534											
PLG	5340	broad.mit.edu	37	chr6	161159688	161159688	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtcttgtcttaaatacTttttctgtccttcttttcct	4	9	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161159688	A	A	161159688	1	1	214	0	1	0	0	0	0	0	0	0	12181	1624	56	5		5	PLG	6	161159688	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	654659	161159688	9955379	575	166535											
C6orf118	168090	broad.mit.edu	37	chr6	165703312	165703312	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccaaatcacattacttcaTgtgtttgccaaggtcttcaa	5	10	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165703312	C	C	165703312	1	2	214	0	1	0	0	0	0	0	0	0	2346	1479	51	5		5	C6orf118	6	165703312	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	4543624	165703312	5411755	576	166536											
KIF25	3834	broad.mit.edu	37	chr6	168445427	168445427	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctctgcagccgcccatctCgggccctggttgctggcatg	12	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168445427	T	T	168445427	1	4	214	0	1	0	0	0	0	0	0	0	8363	899	31	4		4	KIF25	6	168445427	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2742115	168445427	2669640	577	166537											
THBS2	7058	broad.mit.edu	37	chr6	169632688	169632688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcctctccttcctcctGctgcttttctgagctcatct	4	18	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169632688	T	T	169632688	1	4	214	0	1	0	0	0	0	0	0	0	15977	1334	46	3		3	THBS2	6	169632688	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1187261	169632688	1482379	578	166538											
THBS2	7058	broad.mit.edu	37	chr6	169632746	169632746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcaacacacaaggaaggcCggccttgcgtacttgctttt	10	12	0	0	rs78842639	byFrequency;by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169632746	A	A	169632746	1	1	214	0	1	0	0	0	0	0	0	0	15977	667	23	1		1	THBS2	6	169632746	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	58	169632746	1482321	579	166539											
INTS1	26173	broad.mit.edu	37	chr7	1527663	1527663	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagtgggccacgctcaGggtcaaggagggtaaaaccc	13	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1527663	A	A	1527663	1	1	214	0	1	0	0	0	0	0	0	0	7845	1015	35	4		4	INTS1	7	1527663	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08		1527663	157611000	580	166540											
MAD1L1	8379	broad.mit.edu	37	chr7	2108767	2108767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacagtgagatccagctaaCcaggtgtgcactgacccgca	10	14	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2108767	A	A	2108767	1	1	214	0	1	0	0	0	0	0	0	0	9235	522	18	3		3	MAD1L1	7	2108767	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	581104	2108767	157029896	581	166541											
GNA12	2768	broad.mit.edu	37	chr7	2834839	2834839	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagactaaaccacgctagaGaagctcaaaatgggcatcca	8	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2834839	C	C	2834839	1	2	214	0	1	0	0	0	0	0	0	0	6564	957	33	4		4	GNA12	7	2834839	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	726072	2834839	156303824	582	166542											
SDK1	221935	broad.mit.edu	37	chr7	4027036	4027036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccttaacctttacttctGggtcagacccaaaacaacta	5	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4027036	T	T	4027036	1	4	214	0	1	0	0	0	0	0	0	0	14081	1363	47	2		2	SDK1	7	4027036	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1192197	4027036	155111627	583	166543											
ACTB	60	broad.mit.edu	37	chr7	5567585	5567585	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cagctccccacacaccacagGaccccacagccgacctgccc	6	23	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5567585	C	C	5567585	1	2	214	0	1	0	0	0	0	0	0	0	193	1189	41	4		4	ACTB	7	5567585	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1540549	5567585	153571078	584	166544											
THSD7A	221981	broad.mit.edu	37	chr7	11676433	11676433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtacaactctttgtgccaatCgcaaactttgaaacaattct	5	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11676433	A	A	11676433	3	1	214	1	0	0	0	0	1	0	0	0	16002	884	31	3	4731	3	THSD7A	7	11676433	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6108848	11676433	147462230	585	166545											
DGKB	1607	broad.mit.edu	37	chr7	14775748	14775748	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgacatgaaaaggtgtgcAgtgaaatcatcaggaagctc	11	6	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14775748	T	T	14775748	2	4	214	1	0	0	0	0	0	0	0	1	4506	175	7	5		5	DGKB	7	14775748	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	3099315	14775748	144362915	586	166546											
DGKB	1607	broad.mit.edu	37	chr7	14789811	14789811	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagacataaatatttctagCttcaatgcacattatgttat	5	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14789811	A	A	14789811	1	1	214	0	1	0	0	0	0	0	0	0	4506	812	28	3		3	DGKB	7	14789811	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	14063	14789811	144348852	587	166547											
ANKMY2	57037	broad.mit.edu	37	chr7	16649287	16649287	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcaatgcttcgaaccagctGctggaggagtgtagcttcac	12	10	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16649287	C	C	16649287	3	2	214	1	0	0	0	0	1	0	0	0	635	1328	46	4	491	4	ANKMY2	7	16649287	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1859476	16649287	142489376	588	166548											
AGR3	155465	broad.mit.edu	37	chr7	16904838	16904838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgttttgattttgacagCgtagcatttgattttaaaga	8	4	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16904838	A	A	16904838	1	1	214	0	1	0	0	0	0	0	0	0	396	783	27	3		3	AGR3	7	16904838	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	255551	16904838	142233825	589	166549											
HDAC9	9734	broad.mit.edu	37	chr7	18869188	18869188	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggtatgtattcctggccAgagctgcattttcagtgatt	10	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18869188	T	T	18869188	1	4	214	0	1	0	0	0	0	0	0	0	7081	203	7	5		5	HDAC9	7	18869188	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	1964350	18869188	140269475	590	166550											
HDAC9	9734	broad.mit.edu	37	chr7	18875231	18875231	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcggtttatttctttagagCcccacttttatttgtatctt	5	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18875231	G	G	18875231	1	3	214	0	1	0	0	0	0	0	0	0	7081	739	26	4		4	HDAC9	7	18875231	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6043	18875231	140263432	591	166551											
SP4	6671	broad.mit.edu	37	chr7	21516717	21516717	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcagcaaggacaagatGgagtaaaagtccagcaagct	12	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21516717	C	C	21516717	3	2	214	1	0	0	0	0	1	0	0	0	15080	1349	47	4	1713	4	SP4	7	21516717	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2641486	21516717	137621946	592	166552											
HIBADH	11112	broad.mit.edu	37	chr7	27668979	27668979	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggtttgcatatattttagCtaccacttaccaccagaaac	5	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27668979	A	A	27668979	1	1	214	0	1	0	0	0	0	0	0	0	7166	812	28	3		3	HIBADH	7	27668979	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6152262	27668979	131469684	593	166553											
NOD1	10392	broad.mit.edu	37	chr7	30475652	30475652	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgttctgctgcagggccctCgcaaggctctttcctccttc	10	15	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30475652	T	T	30475652	2	4	214	1	0	0	0	0	0	0	0	1	10611	871	31	4		4	NOD1	7	30475652	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	2806673	30475652	128663011	594	166554											
FKBP9	11328	broad.mit.edu	37	chr7	33020067	33020067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatttccattgagaacaaGgtagtacctgaaaactgtga	9	7	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33020067	T	T	33020067	3	4	214	1	0	0	0	0	1	0	0	0	5972	991	35	2	813	2	FKBP9	7	33020067	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2544415	33020067	126118596	595	166555											
BMPER	168667	broad.mit.edu	37	chr7	34094977	34094978	+	Intron	INS	-	A	A													gctgacaattaaaaagctccINSagacactaggcagattgggt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34094978	A	A	34094977	6	5	214	0	1	1	1	0	0	0	0	0	1474	609	21	0		0	BMPER	7	34094977	Intron	INS	-	TCGA-75-5126-01A-01D-1753-08	1074910	34094977	125043686	596	166556											
NPSR1	387129	broad.mit.edu	37	chr7	34724315	34724315	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtaagtaactatgcaagtGagaggcaggaagctatatgt	13	4	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34724315	C	C	34724315	1	2	214	0	1	0	0	0	0	0	0	0	10695	1305	45	4		4	NPSR1	7	34724315	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	629338	34724315	124414348	597	166557											
AOAH	313	broad.mit.edu	37	chr7	36763639	36763639	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatacctacacaggtgtGcccattcgagaggctgggcc	12	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36763639	T	T	36763639	3	4	214	1	0	0	0	0	1	0	0	0	728	1319	46	3	2037	3	AOAH	7	36763639	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2039324	36763639	122375024	598	166558											
SFRP4	6424	broad.mit.edu	37	chr7	37951670	37951670	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catgactgctaactgagattGaggtcttcctaacagtgtgc	10	9	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37951670	C	C	37951670	1	2	214	0	1	0	0	0	0	0	0	0	14276	1305	45	4		4	SFRP4	7	37951670	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1188031	37951670	121186993	599	166559											
GLI3	2737	broad.mit.edu	37	chr7	42085017	42085017	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatattccatgtggatggcCcccgtgccggcggtggcagc	15	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42085017	A	A	42085017	2	1	214	1	0	0	0	0	0	0	0	1	6503	610	22	2		2	GLI3	7	42085017	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	4133347	42085017	117053646	600	166560											
C7orf25	79020	broad.mit.edu	37	chr7	42971889	42971889	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgctccaagagcatgcgGggtgttgtagttctaagaag	14	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42971889	T	T	42971889	1	4	214	0	1	0	0	0	0	0	0	0	2405	1247	43	2		2	C7orf25	7	42971889	5'Flank	SNP	G	TCGA-75-5126-01A-01D-1753-08	886872	42971889	116166774	601	166561											
MYL7	58498	broad.mit.edu	37	chr7	44179064	44179064	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgggctctgggtcatggGtgaaggcccagagaaggtgc	17	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44179064	A	A	44179064	1	1	214	0	1	0	0	0	0	0	0	0	10147	1276	44	4		4	MYL7	7	44179064	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1207175	44179064	114959599	602	166562											
NUDCD3	23386	broad.mit.edu	37	chr7	44524670	44524670	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catttccttcacagggcctgGaggctgcactttctctactt	8	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44524670	C	C	44524670	3	2	214	1	0	0	0	0	1	0	0	0	10819	1174	41	4	699	4	NUDCD3	7	44524670	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	345606	44524670	114613993	603	166563											
COBL	23242	broad.mit.edu	37	chr7	51097337	51097337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtttcccacaccaattaCttagtgtaactgcagccatg	7	11	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51097337	A	A	51097337	1	1	214	0	1	0	0	0	0	0	0	0	3685	580	20	3		3	COBL	7	51097337	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6572667	51097337	108041326	604	166564											
CCT6A	908	broad.mit.edu	37	chr7	56122990	56122990	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaatgaaagaaaataaaGataggataatgctaccatct	6	4	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56122990	T	T	56122990	1	4	214	0	1	0	0	0	0	0	0	0	2987	957	33	3		3	CCT6A	7	56122990	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5025653	56122990	103015673	605	166565											
ZNF716	441234	broad.mit.edu	37	chr7	57522900	57522900	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagagcgaatgaagcagatGacacagatgagagttacaaa	12	5	0	6			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57522900	A	A	57522900	1	1	214	0	1	0	0	0	0	0	0	0	18247	1305	45	4		4	ZNF716	7	57522900	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1399910	57522900	101615763	606	166566											
STX1A	6804	broad.mit.edu	37	chr7	73123236	73123236	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcttccatctattcaccctCaaaacggttcattcgttggc	6	13	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73123236	G	G	73123236	1	3	214	0	1	0	0	0	0	0	0	0	15461	841	29	4		4	STX1A	7	73123236	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	15600336	73123236	86015427	607	166567											
LAT2	7462	broad.mit.edu	37	chr7	73630349	73630357	+	In_Frame_Del	DEL	TGGTGCTGT	-	-													gtggcccggagcagcgctgcTggtgctgttgggggtggcag							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73630357	-	-	73630349	7	5	214	1	0	1	0	1	0	0	0	0	8717	1580	55	0	46	0	LAT2	7	73630349	In_Frame_Del	DEL	TGGTGCTGT	TCGA-75-5126-01A-01D-1753-08	507113	73630349	85508314	608	166568											
PCLO	27445	broad.mit.edu	37	chr7	82544191	82544191	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagccctggccattcccaTtggctggccaacaggactga	11	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82544191	A	A	82544191	3	1	214	1	0	0	0	0	1	0	0	0	11677	1493	52	5	2410	5	PCLO	7	82544191	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	8913842	82544191	76594472	609	166569											
SEMA3D	223117	broad.mit.edu	37	chr7	84651811	84651811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgattctcttgaacgttggtCctcctgcaactgggtatacg	10	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84651811	A	A	84651811	3	1	214	1	0	0	0	0	1	0	0	0	14140	855	30	3	1051	3	SEMA3D	7	84651811	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2107620	84651811	74486852	610	166570											
ZNF804B	219578	broad.mit.edu	37	chr7	88956813	88956813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattaaaggtgtctgggatGcttcaaaactctcgtcaacc	9	9	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88956813	T	T	88956813	1	4	214	0	1	0	0	0	0	0	0	0	18300	1334	46	3		3	ZNF804B	7	88956813	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4305002	88956813	70181850	611	166571											
ANKIB1	54467	broad.mit.edu	37	chr7	92000797	92000797	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttaatatcccaaagttgtggGagttagtgaagcctacgagg	12	6	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92000797	C	C	92000797	3	2	214	1	0	0	0	0	1	0	0	0	630	1174	41	4	1531	4	ANKIB1	7	92000797	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3043984	92000797	67137866	612	166572											
CCDC132	55610	broad.mit.edu	37	chr7	92923863	92923863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttattttcagaagggaGtaatatgataggtactgaag	10	3	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92923863	T	T	92923863	3	4	214	1	0	0	0	0	1	0	0	0	2793	1029	36	3	1178	3	CCDC132	7	92923863	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	923066	92923863	66214800	613	166573											
CCDC132	55610	broad.mit.edu	37	chr7	92970769	92970769	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcctactgccacactcAcagcagcagaagaaagaaag	8	12	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92970769	T	T	92970769	3	4	214	1	0	0	0	0	1	0	0	0	2793	159	6	5	2221	5	CCDC132	7	92970769	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	46906	92970769	66167894	614	166574											
CCDC132	55610	broad.mit.edu	37	chr7	92987894	92987895	+	3'UTR	DEL	TG	-	-													gaaagtggaaaatattgaaaTgtgtgtggtgttctcatgac							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	92987895	-	-	92987894	6	5	214	0	1	1	0	1	0	0	0	0	2793	1479	51	0		0	CCDC132	7	92987894	3'UTR	DEL	TG	TCGA-75-5126-01A-01D-1753-08	17125	92987894	66150769	615	166575											
GNGT1	2792	broad.mit.edu	37	chr7	93536065	93536065	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggcaaaaagatgccaGtaatcaatattgaggacctg	10	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93536065	T	T	93536065	3	4	214	1	0	0	0	0	1	0	0	0	6597	1029	36	3	9	3	GNGT1	7	93536065	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	548171	93536065	65602598	616	166576											
TMEM130	222865	broad.mit.edu	37	chr7	98446204	98446204	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccaccccactgagtacccAcctccaccatgtccttttgc	4	21	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98446204	G	G	98446204	5	3	214	1	0	0	0	0	0	0	1	0	16166	173	6	5	194	5	TMEM130	7	98446204	Splice_Site	SNP	A	TCGA-75-5126-01A-01D-1753-08	4910139	98446204	60692459	617	166577											
TRRAP	8295	broad.mit.edu	37	chr7	98529307	98529307	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtgagatttctgtcaccaGaaccaaggtaatttcaacaa	8	8	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	98529307	C	C	98529307	1	2	214	0	1	0	0	0	0	0	0	0	16726	957	33	4		4	TRRAP	7	98529307	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	83103	98529307	60609356	618	166578											
CYP3A7	1551	broad.mit.edu	37	chr7	99311209	99311209	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaaagtgactcgtgaagtcaGaagttaatcagaagtgcagt	12	5	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99311209	A	A	99311209	1	1	214	0	1	0	0	0	0	0	0	0	4214	957	33	4		4	CYP3A7	7	99311209	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	781902	99311209	59827454	619	166579											
AZGP1	563	broad.mit.edu	37	chr7	99566081	99566081	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcccccgaccccacagagaGacagtcagcctggtgagaaa	10	15	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99566081	T	T	99566081	1	4	214	0	1	0	0	0	0	0	0	0	1244	957	33	3		3	AZGP1	7	99566081	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	254872	99566081	59572582	620	166580											
LRCH4	4034	broad.mit.edu	37	chr7	100174741	100174741	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtggacacggcggcggcCcctcccacaacagccctgag	13	16	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100174741	A	A	100174741	2	1	214	1	0	0	0	0	0	0	0	1	9022	610	22	2		2	LRCH4	7	100174741	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	608660	100174741	58963922	621	166581											
FBXO24	26261	broad.mit.edu	37	chr7	100184350	100184350	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctggccggccgggaacGcagttcgccgctgcagtggc	16	16	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100184350	A	A	100184350	1	1	214	0	1	0	0	0	0	0	0	0	5792	1102	38	4		4	FBXO24	7	100184350	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	9609	100184350	58954313	622	166582											
ACTL6B	51412	broad.mit.edu	37	chr7	100244946	100244946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgagggcctgccttcccCgtgagcagcaccccctgccc	12	18	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100244946	A	A	100244946	1	1	214	0	1	0	0	0	0	0	0	0	199	667	23	1		1	ACTL6B	7	100244946	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	60596	100244946	58893717	623	166583											
ZAN	7455	broad.mit.edu	37	chr7	100364793	100364793	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccaacgagaaccgcggGgggatcctggaggtctccta	14	13	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100364793	T	T	100364793	2	4	214	1	0	0	0	0	0	0	0	1	17640	1219	43	2		2	ZAN	7	100364793	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	119847	100364793	58773870	624	166584											
ZAN	7455	broad.mit.edu	37	chr7	100385713	100385713	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaggaagtgattaccacCgtctacggctataaagtgca	10	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100385713	A	A	100385713	2	1	214	1	0	0	0	0	0	0	0	1	17640	639	23	1		1	ZAN	7	100385713	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	20920	100385713	58752950	625	166585											
SLC12A9	56996	broad.mit.edu	37	chr7	100458938	100458938	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagggaggactcgggctcaGgcgtggggctggggactgca	21	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100458938	T	T	100458938	1	4	214	0	1	0	0	0	0	0	0	0	14503	1015	35	2		2	SLC12A9	7	100458938	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	73225	100458938	58679725	626	166586											
PRKRIP1	79706	broad.mit.edu	37	chr7	102045135	102045135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgccggaagaagcggtaaGcggcatggcctaactgtgat	15	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102045135	T	T	102045135	1	4	214	0	1	0	0	0	0	0	0	0	12631	986	34	3		3	PRKRIP1	7	102045135	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1586197	102045135	57093528	627	166587											
RELN	5649	broad.mit.edu	37	chr7	103194238	103194238	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtttacattatttccatcGataatgaagtcatcaacaat	4	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103194238	T	T	103194238	2	4	214	1	0	0	0	0	0	0	0	1	13328	1048	37	3		3	RELN	7	103194238	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1149103	103194238	55944425	628	166588											
RELN	5649	broad.mit.edu	37	chr7	103234751	103234751	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatctgtcttcttggagttCagacataggagaatacctga	9	7	4	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103234751	G	G	103234751	1	3	214	0	1	0	0	0	0	0	0	0	13328	841	29	4		4	RELN	7	103234751	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	40513	103234751	55903912	629	166589											
RELN	5649	broad.mit.edu	37	chr7	103363606	103363606	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaatggaaaattggaggacAgaagctgttgttgtattaag	12	4	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103363606	G	G	103363606	2	3	214	1	0	0	0	0	0	0	0	1	13328	175	7	5		5	RELN	7	103363606	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	128855	103363606	55775057	630	166590											
LHFPL3	375612	broad.mit.edu	37	chr7	103969375	103969375	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccatctgctttgccatcGtcaacgtggtgtgcttcatc	8	13	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103969375	A	A	103969375	3	1	214	1	0	0	0	0	1	0	0	0	8838	1145	40	4	150	4	LHFPL3	7	103969375	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	605769	103969375	55169288	631	166591											
MLL5	55904	broad.mit.edu	37	chr7	104749463	104749463	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagacagagaactttccactCattagtgtatcaccccatgc	6	12	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104749463	G	G	104749463	2	3	214	1	0	0	0	0	0	0	0	1	9717	813	29	4		4	MLL5	7	104749463	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	780088	104749463	54389200	632	166592											
SLC26A4	5172	broad.mit.edu	37	chr7	107341478	107341478	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgagaaatagcctttccaGataacagttgccattaataa	6	7	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107341478	C	C	107341478	1	2	214	0	1	0	0	0	0	0	0	0	14633	957	33	4		4	SLC26A4	7	107341478	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2592015	107341478	51797185	633	166593											
FOXP2	93986	broad.mit.edu	37	chr7	114293954	114293954	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatcagtcatttctaaaacGcttctgatctcactctttct	4	11	7	1	rs115129935	by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114293954	C	C	114293954	1	2	214	0	1	0	0	0	0	0	0	0	6087	1102	38	4		4	FOXP2	7	114293954	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	6952476	114293954	44844709	634	166594											
C7orf58	79974	broad.mit.edu	37	chr7	120765987	120765987	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgagcttctaccttgtgGtgagagatcagtgtgtgtgt	14	5	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120765987	T	T	120765987	1	4	214	0	1	0	0	0	0	0	0	0	2430	1276	44	3		3	C7orf58	7	120765987	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	6472033	120765987	38372676	635	166595											
LMOD2	442721	broad.mit.edu	37	chr7	123296091	123296091	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaactcctcgcctcccTgtcagccgaggagctgaagg	13	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123296091	C	C	123296091	3	2	214	1	0	0	0	0	1	0	0	0	8931	1580	55	5	76	5	LMOD2	7	123296091	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	2530104	123296091	35842572	636	166596											
GRM8	2918	broad.mit.edu	37	chr7	126173904	126173904	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgcagacagacgccgggTgagtatgttctctatgagcc	14	10	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126173904	G	G	126173904	3	3	214	1	0	0	0	0	1	0	0	0	6869	1696	59	5	1256	5	GRM8	7	126173904	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	2877813	126173904	32964759	637	166597											
SMO	6608	broad.mit.edu	37	chr7	128846155	128846155	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagacctcctacttccaccTgctcacctggtcactcccct	4	20	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128846155	G	G	128846155	3	3	214	1	0	0	0	0	1	0	0	0	14914	1580	55	5	1103	5	SMO	7	128846155	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	2672251	128846155	30292508	638	166598											
NRF1	4899	broad.mit.edu	37	chr7	129317534	129317534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcaagctattgtcctctGtatctcaccctccaaaccta	4	15	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129317534	T	T	129317534	3	4	214	1	0	0	0	0	1	0	0	0	10741	1377	48	3	411	3	NRF1	7	129317534	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	471379	129317534	29821129	639	166599											
NRF1	4899	broad.mit.edu	37	chr7	129350356	129350356	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatagctcatcttgtaccatCacagactgtagtccagactt	6	11	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129350356	A	A	129350356	4	1	214	1	0	0	0	0	0	1	0	0	10741	838	29	3	930	3	NRF1	7	129350356	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	32822	129350356	29788307	640	166600											
CPA4	51200	broad.mit.edu	37	chr7	129945771	129945771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaggaaggtcatgctgcGtggtattagccaggaatgct	15	7	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129945771	T	T	129945771	1	4	214	0	1	0	0	0	0	0	0	0	3824	1160	40	3		3	CPA4	7	129945771	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	595415	129945771	29192892	641	166601											
PLXNA4	91584	broad.mit.edu	37	chr7	132192229	132192229	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggttctcatcctacactcCcaaccatcccagcgcgcagc	8	18	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132192229	A	A	132192229	1	1	214	0	1	0	0	0	0	0	0	0	12217	638	22	2		2	PLXNA4	7	132192229	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2246458	132192229	26946434	642	166602											
DGKI	9162	broad.mit.edu	37	chr7	137270095	137270095	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggttcatcagtgtagccctGaggaatcagagaacatatcc	10	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137270095	A	A	137270095	1	1	214	0	1	0	0	0	0	0	0	0	4511	1305	45	4		4	DGKI	7	137270095	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5077866	137270095	21868568	643	166603											
DGKI	9162	broad.mit.edu	37	chr7	137284475	137284475	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaggtagatgacagatggtCaggatatacctcacaaggta	12	6	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137284475	A	A	137284475	1	1	214	0	1	0	0	0	0	0	0	0	4511	841	29	3		3	DGKI	7	137284475	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	14380	137284475	21854188	644	166604											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138394486	138394486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgacgattcctccccagCctcgcgtctgaaggccgctg	10	19	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138394486	A	A	138394486	3	1	214	1	0	0	0	0	1	0	0	0	1174	739	26	3	218	3	ATP6V0A4	7	138394486	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1110011	138394486	20744177	645	166605											
MGAM	8972	broad.mit.edu	37	chr7	141776493	141776493	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactatttcacaatcaacctAcaaggaccccaataatttag	4	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141776493	T	T	141776493	1	4	214	0	1	0	0	0	0	0	0	0	9634	406	14	5		5	MGAM	7	141776493	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	3382007	141776493	17362170	646	166606											
PRSS1	5644	broad.mit.edu	37	chr7	142460513	142460513	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caaaaggtggtggggctgagGaggctccctgcagtgcccac	16	11	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142460513	C	C	142460513	1	2	214	0	1	0	0	0	0	0	0	0	12720	1189	41	4		4	PRSS1	7	142460513	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	684020	142460513	16678150	647	166607											
FAM131B	9715	broad.mit.edu	37	chr7	143053878	143053878	+	Frame_Shift_Del	DEL	C	-	-													ccggagcccagtcagtgtctCcccccagcaaaggtggaggc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143053878	-	-	143053878	7	5	214	1	0	1	0	1	0	0	0	0	5486	855	30	0	238	0	FAM131B	7	143053878	Frame_Shift_Del	DEL	C	TCGA-75-5126-01A-01D-1753-08	593365	143053878	16084785	648	166608											
EPHA1	2041	broad.mit.edu	37	chr7	143094631	143094631	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacccagggctggtggttGgggagggggcaggagctggc	22	8	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143094631	A	A	143094631	1	1	214	0	1	0	0	0	0	0	0	0	5207	1363	47	4		4	EPHA1	7	143094631	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	40753	143094631	16044032	649	166609											
CNTNAP2	26047	broad.mit.edu	37	chr7	146536957	146536958	+	Frame_Shift_Ins	INS	-	T	T													tgctctacagcgacacagggINSagaaactggaaaccctatca							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146536958	T	T	146536957	7	5	214	1	0	1	1	0	0	0	0	0	3679	1161	41	0	373	0	CNTNAP2	7	146536957	Frame_Shift_Ins	INS	-	TCGA-75-5126-01A-01D-1753-08	3442326	146536957	12601706	650	166610											
CNTNAP2	26047	broad.mit.edu	37	chr7	147869430	147869430	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaagagcaaaggtcacatCtgggttcatatccggatgct	12	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147869430	G	G	147869430	3	3	214	1	0	0	0	0	1	0	0	0	3679	913	32	4	2940	4	CNTNAP2	7	147869430	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1332473	147869430	11269233	651	166611											
CNTNAP2	26047	broad.mit.edu	37	chr7	147926752	147926752	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctataggaagcttacagattCgatacaacctgggtggcacc	10	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147926752	T	T	147926752	4	4	214	1	0	0	0	0	0	1	0	0	3679	876	31	4	3340	4	CNTNAP2	7	147926752	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	57322	147926752	11211911	652	166612											
SSPO	23145	broad.mit.edu	37	chr7	149485820	149485821	+	Intron	DNP	CC	AA	AA													agcccagcctgtggctgatcCcaggacgctgtgtgctcagc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	149485821	AA	AA	149485820	1	1	214	0	1	0	0	0	0	0	0	0	15307	638	22	2		2	SSPO	7	149485820	Intron	DNP	CC	TCGA-75-5126-01A-01D-1753-08	1559068	149485820	9652843	653	166613											
REPIN1	29803	broad.mit.edu	37	chr7	150069696	150069696	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atcggcgcgaccacgcccccGatcggcccttcgtgtgtccc	11	19	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150069696	A	A	150069696	3	1	214	1	0	0	0	0	1	0	0	0	13335	1058	37	4	1543	4	REPIN1	7	150069696	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	583876	150069696	9068967	654	166614											
ZNF775	285971	broad.mit.edu	37	chr7	150094415	150094415	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcgagccgcgccagttcatCtgcaacgagtgtggcaagag	15	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150094415	G	G	150094415	3	3	214	1	0	0	0	0	1	0	0	0	18277	903	32	4	852	4	ZNF775	7	150094415	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	24719	150094415	9044248	655	166615											
GIMAP8	155038	broad.mit.edu	37	chr7	150167962	150167962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagggagacaagccacagGgtaagttgatctttaagaaa	12	5	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150167962	T	T	150167962	3	4	214	1	0	0	0	0	1	0	0	0	6449	1246	43	2	688	2	GIMAP8	7	150167962	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	73547	150167962	8970701	656	166616											
GIMAP8	155038	broad.mit.edu	37	chr7	150174463	150174463	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacattttttgtcctggtGttccagctgggacgattcac	10	10	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150174463	A	A	150174463	2	1	214	1	0	0	0	0	0	0	0	1	6449	1364	48	4		4	GIMAP8	7	150174463	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	6501	150174463	8964200	657	166617											
GIMAP2	26157	broad.mit.edu	37	chr7	150389659	150389659	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagctctgtacaaagaggtGcagaggtgctacttgctgtc	13	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150389659	A	A	150389659	2	1	214	1	0	0	0	0	0	0	0	1	6444	1306	46	4		4	GIMAP2	7	150389659	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	215196	150389659	8749004	658	166618											
MLL3	58508	broad.mit.edu	37	chr7	151853437	151853437	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttaaattattctgctgcaGgagaccaaaaaatttaaatt	5	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151853437	A	A	151853437	1	1	214	0	1	0	0	0	0	0	0	0	9715	1015	35	4		4	MLL3	7	151853437	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1463778	151853437	7285226	659	166619											
MLL3	58508	broad.mit.edu	37	chr7	151945153	151945153	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtcatgcgaaggcaagtctGaagaaggtgttggggaggaa	17	4	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151945153	A	A	151945153	3	1	214	1	0	0	0	0	1	0	0	0	9715	1294	45	4	12553	4	MLL3	7	151945153	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	91716	151945153	7193510	660	166620											
MLL3	58508	broad.mit.edu	37	chr7	151945231	151945231	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgatgactctgtctcagatGataactttatagatttgcct	7	7	2	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151945231	A	A	151945231	3	1	214	1	0	0	0	0	1	0	0	0	9715	1294	45	4	12631	4	MLL3	7	151945231	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	78	151945231	7193432	661	166621											
LMBR1	64327	broad.mit.edu	37	chr7	156476920	156476920	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtggctgggaaagggttaGggtagggagaagaggagatt	21	1	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156476920	A	A	156476920	1	1	214	0	1	0	0	0	0	0	0	0	8914	1015	35	4		4	LMBR1	7	156476920	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4531689	156476920	2661743	662	166622											
WDR60	55112	broad.mit.edu	37	chr7	158677335	158677335	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggattgcatgccctgtggtcGacctttacgtgtgccgctct	12	12	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158677335	T	T	158677335	1	4	214	0	1	0	0	0	0	0	0	0	17438	1073	37	3		3	WDR60	7	158677335	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2200415	158677335	461328	663	166623											
MYOM2	9172	broad.mit.edu	37	chr8	2092729	2092729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcatgaccatcaaaggcGtgacctccgaggactcgggc	12	13	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2092729	T	T	2092729	3	4	214	1	0	0	0	0	1	0	0	0	10186	1145	40	3	4364	3	MYOM2	8	2092729	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08		2092729	144271293	664	166624											
CSMD1	64478	broad.mit.edu	37	chr8	2813256	2813256	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatggctctcacatccgcGtgtgccggggtttctggctg	14	12	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2813256	T	T	2813256	3	4	214	1	0	0	0	0	1	0	0	0	3978	1136	40	3	873	3	CSMD1	8	2813256	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	720527	2813256	143550766	665	166625											
MCPH1	79648	broad.mit.edu	37	chr8	6335040	6335040	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacttttcaaaaaacttattAcagtttatttctgtgggaaa	5	5	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6335040	G	G	6335040	1	3	214	0	1	0	0	0	0	0	0	0	9491	406	14	5		5	MCPH1	8	6335040	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	3521784	6335040	140028982	666	166626											
MFHAS1	9258	broad.mit.edu	37	chr8	8643648	8643648	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caataagaaaaggaagtgatGatagaaatctattttctgca	8	4	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8643648	A	A	8643648	1	1	214	0	1	0	0	0	0	0	0	0	9614	1305	45	4		4	MFHAS1	8	8643648	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2308608	8643648	137720374	667	166627											
TNFRSF10A	8797	broad.mit.edu	37	chr8	23057322	23057322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgagagcacggggacccaCccacctggactacactgtgg	12	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23057322	A	A	23057322	1	1	214	0	1	0	0	0	0	0	0	0	16403	522	18	3		3	TNFRSF10A	8	23057322	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	14413674	23057322	123306700	668	166628											
ESCO2	157570	broad.mit.edu	37	chr8	27645510	27645510	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaaaaaacaaaagaccaGctcatcatcgtgagtaaatt	6	7	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27645510	T	T	27645510	3	4	214	1	0	0	0	0	1	0	0	0	5291	962	34	3	1140	3	ESCO2	8	27645510	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4588188	27645510	118718512	669	166629											
GSR	2936	broad.mit.edu	37	chr8	30539656	30539656	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgttccactagccatttatCcatctaccttaatgccctag	4	13	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30539656	T	T	30539656	1	4	214	0	1	0	0	0	0	0	0	0	6894	870	30	4		4	GSR	8	30539656	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2894146	30539656	115824366	670	166630											
TEX15	56154	broad.mit.edu	37	chr8	30694318	30694318	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattaaaatgtgaaactcaCcataaacccaaggaacttct	5	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30694318	A	A	30694318	5	1	214	1	0	0	0	0	0	0	1	0	15901	521	18	3	44	3	TEX15	8	30694318	Splice_Site	SNP	C	TCGA-75-5126-01A-01D-1753-08	154662	30694318	115669704	671	166631											
PROSC	11212	broad.mit.edu	37	chr8	37635389	37635389	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagccaccacgccccgtcCatagaaggctcttgagagcc	11	15	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37635389	T	T	37635389	1	4	214	0	1	0	0	0	0	0	0	0	12665	609	21	4		4	PROSC	8	37635389	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6941071	37635389	108728633	672	166632											
HTRA4	203100	broad.mit.edu	37	chr8	38835503	38835503	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtactgatgctgggaagatCatctgaccttcgggctggag	14	8	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38835503	A	A	38835503	4	1	214	1	0	0	0	0	0	1	0	0	7526	838	29	3	817	3	HTRA4	8	38835503	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1200114	38835503	107528519	673	166633											
ANK1	286	broad.mit.edu	37	chr8	41572557	41572557	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgccacccgcaccttcccGtacttggccgccacgtgcag	9	19	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41572557	A	A	41572557	2	1	214	1	0	0	0	0	0	0	0	1	620	1140	40	4		4	ANK1	8	41572557	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2737054	41572557	104791465	674	166634											
PRKDC	5591	broad.mit.edu	37	chr8	48719705	48719705	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgagtacccacctgcttcCgggcactgtctatcatcttc	7	16	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48719705	A	A	48719705	3	1	214	1	0	0	0	0	1	0	0	0	12627	652	23	1	2718	1	PRKDC	8	48719705	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	7147148	48719705	97644317	675	166635											
PXDNL	137902	broad.mit.edu	37	chr8	52336217	52336217	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tatcttccctggtcagggaaCcctgcgtcgtagatagtcag	11	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52336217	G	G	52336217	2	3	214	1	0	0	0	0	0	0	0	1	12956	494	18	4		4	PXDNL	8	52336217	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	3616512	52336217	94027805	676	166636											
ST18	9705	broad.mit.edu	37	chr8	53045828	53045828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcatagtttccagtcacGtgccccgagccatcgcagcc	10	15	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53045828	T	T	53045828	3	4	214	1	0	0	0	0	1	0	0	0	15330	1136	40	3	837	3	ST18	8	53045828	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	709611	53045828	93318194	677	166637											
TCEA1	6917	broad.mit.edu	37	chr8	54885026	54885026	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggcatgcatggagagaatCagataaacctgctcctcgtg	12	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54885026	G	G	54885026	1	3	214	0	1	0	0	0	0	0	0	0	15789	841	29	4		4	TCEA1	8	54885026	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1839198	54885026	91478996	678	166638											
ASPH	444	broad.mit.edu	37	chr8	62438718	62438718	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gactgaaaaagggcctggtgGagcacctcataatgactctt	11	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62438718	A	A	62438718	1	1	214	0	1	0	0	0	0	0	0	0	1057	1189	41	4		4	ASPH	8	62438718	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	7553692	62438718	83925304	679	166639											
ADHFE1	137872	broad.mit.edu	37	chr8	67366087	67366087	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacagcgtatttattatGcctttgctgaaacagttgat	9	7	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67366087	T	T	67366087	1	4	214	0	1	0	0	0	0	0	0	0	314	1334	46	3		3	ADHFE1	8	67366087	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4927369	67366087	78997935	680	166640											
ARFGEF1	10565	broad.mit.edu	37	chr8	68179364	68179364	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttcttgactgccccttcCttgagcaatttttgatagat	7	9	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68179364	A	A	68179364	4	1	214	1	0	0	0	0	0	1	0	0	854	690	24	2	3887	2	ARFGEF1	8	68179364	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	813277	68179364	78184658	681	166641											
PREX2	80243	broad.mit.edu	37	chr8	68942927	68942927	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttgacaatcgagcttaagAtagttttatgttgcaggcct	10	7	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68942927	G	G	68942927	1	3	214	0	1	0	0	0	0	0	0	0	12583	348	12	5		5	PREX2	8	68942927	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	763563	68942927	77421095	682	166642											
PREX2	80243	broad.mit.edu	37	chr8	69018602	69018602	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtttctttattagtaaagtGatgggataggtcaggatttc	11	4	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69018602	C	C	69018602	1	2	214	0	1	0	0	0	0	0	0	0	12583	1305	45	4		4	PREX2	8	69018602	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	75675	69018602	77345420	683	166643											
PRDM14	63978	broad.mit.edu	37	chr8	70978624	70978624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatatatgcccttgacaCtgcacagcaactaggttctg	7	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70978624	A	A	70978624	3	1	214	1	0	0	0	0	1	0	0	0	12561	564	20	3	702	3	PRDM14	8	70978624	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1960022	70978624	75385398	684	166644											
MSC	9242	broad.mit.edu	37	chr8	72754968	72754968	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtccggtcttcccgagacCacgaatggccatgtctgtaa	11	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72754968	T	T	72754968	2	4	214	1	0	0	0	0	0	0	0	1	9962	581	21	4		4	MSC	8	72754968	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1776344	72754968	73609054	685	166645											
CRISPLD1	83690	broad.mit.edu	37	chr8	75944503	75944503	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacttggaagaggaccatAaagactattccaaatgcaat	7	7	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75944503	G	G	75944503	1	3	214	0	1	0	0	0	0	0	0	0	3914	377	13	5		5	CRISPLD1	8	75944503	3'UTR	SNP	A	TCGA-75-5126-01A-01D-1753-08	3189535	75944503	70419519	686	166646											
HNF4G	3174	broad.mit.edu	37	chr8	76452273	76452273	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttggacccaacttacacaActttggagtttgaaactatg	7	8	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76452273	G	G	76452273	1	3	214	0	1	0	0	0	0	0	0	0	7321	43	2	5		5	HNF4G	8	76452273	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	507770	76452273	69911749	687	166647											
ZFHX4	79776	broad.mit.edu	37	chr8	77619809	77619809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgccgcctgaaatccgGcttgccagtggtcagctaat	12	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77619809	T	T	77619809	1	4	214	0	1	0	0	0	0	0	0	0	17761	1190	42	3		3	ZFHX4	8	77619809	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1167536	77619809	68744213	688	166648											
SNX16	64089	broad.mit.edu	37	chr8	82719931	82719931	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaaatcaattaaaagatcTgaggtcagcttgctcctttc	7	8	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	82719931	G	G	82719931	1	3	214	0	1	0	0	0	0	0	0	0	15001	1595	55	5		5	SNX16	8	82719931	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	5100122	82719931	63644091	689	166649											
CA1	759	broad.mit.edu	37	chr8	86249255	86249255	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgaaaatggaactgaaaGagcctgtagctgtcagagaa	12	6	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86249255	A	A	86249255	2	1	214	1	0	0	0	0	0	0	0	1	2536	929	33	4		4	CA1	8	86249255	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	3529324	86249255	60114767	690	166650											
CDH17	1015	broad.mit.edu	37	chr8	95186575	95186575	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctactttttccatctaaaaAgtggagatataatagggaaa	8	5	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95186575	T	T	95186575	1	4	214	0	1	0	0	0	0	0	0	0	3132	87	3	5		5	CDH17	8	95186575	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	8937320	95186575	51177447	691	166651											
KIAA1429	25962	broad.mit.edu	37	chr8	95539232	95539232	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattgcaaatagcttaaccCttttattattaaacttggaa	4	7	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95539232	A	A	95539232	3	1	214	1	0	0	0	0	1	0	0	0	8301	681	24	2	4320	2	KIAA1429	8	95539232	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	352657	95539232	50824790	692	166652											
KCNS2	3788	broad.mit.edu	37	chr8	99440295	99440295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcggcttcaagaggaggCtgcgctcgcacacgctgctg	16	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99440295	A	A	99440295	3	1	214	1	0	0	0	0	1	0	0	0	8159	796	28	3	90	3	KCNS2	8	99440295	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3901063	99440295	46923727	693	166653											
VPS13B	157680	broad.mit.edu	37	chr8	100789079	100789079	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggctgcctgtaccagaGttgactcctgctttacccca	8	16	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100789079	A	A	100789079	3	1	214	1	0	0	0	0	1	0	0	0	17317	1029	36	4	7751	4	VPS13B	8	100789079	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1348784	100789079	45574943	694	166654											
CTHRC1	115908	broad.mit.edu	37	chr8	104384794	104384794	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcatatgtggccgccaggTaggagcatcacagtcaagct	11	11	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104384794	A	A	104384794	1	1	214	0	1	0	0	0	0	0	0	0	4044	1653	57	5		5	CTHRC1	8	104384794	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	3595715	104384794	41979228	695	166655											
RIMS2	9699	broad.mit.edu	37	chr8	104671487	104671487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagactctggcactaccacgGgctgcgggctgcctagtgta	13	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104671487	T	T	104671487	1	4	214	0	1	0	0	0	0	0	0	0	13479	1247	43	2		2	RIMS2	8	104671487	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	286693	104671487	41692535	696	166656											
RIMS2	9699	broad.mit.edu	37	chr8	104898002	104898002	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctaaggatggatcgaccatCaaggcaaagatctatatcag	10	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104898002	T	T	104898002	3	4	214	1	0	0	0	0	1	0	0	0	13479	838	29	4	1315	4	RIMS2	8	104898002	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	226515	104898002	41466020	697	166657											
DPYS	1807	broad.mit.edu	37	chr8	105463629	105463629	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtgcctcctgagagagCagcctggaatcataagaggt	15	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105463629	A	A	105463629	3	1	214	1	0	0	0	0	1	0	0	0	4786	710	25	3	1323	3	DPYS	8	105463629	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	565627	105463629	40900393	698	166658											
PKHD1L1	93035	broad.mit.edu	37	chr8	110451183	110451183	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaactcacacaaaacaTggcggtgtatgttggaggaa	11	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110451183	C	C	110451183	3	2	214	1	0	0	0	0	1	0	0	0	12067	1464	51	5	3944	5	PKHD1L1	8	110451183	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	4987554	110451183	35912839	699	166659											
CSMD3	114788	broad.mit.edu	37	chr8	113516092	113516092	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaatgcattgtatttgaGctgctttctattctctctgg	8	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113516092	T	T	113516092	3	4	214	1	0	0	0	0	1	0	0	0	3980	962	34	3	6281	3	CSMD3	8	113516092	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3064909	113516092	32847930	700	166660											
CSMD3	114788	broad.mit.edu	37	chr8	113871358	113871358	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gactttttttttaaatcacaGatggtgttctcttaccttat	5	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113871358	T	T	113871358	1	4	214	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113871358	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	355266	113871358	32492664	701	166661											
RAD21	5885	broad.mit.edu	37	chr8	117870687	117870687	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagctgaactgctgggccaCatcgatgtcactttaaaaga	9	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117870687	A	A	117870687	3	1	214	1	0	0	0	0	1	0	0	0	13089	478	17	3	1550	3	RAD21	8	117870687	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3999329	117870687	28493335	702	166662											
C8orf76	84933	broad.mit.edu	37	chr8	124251334	124251334	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtctcctttgaatttcttGagagtcagcacttcaacatc	7	10	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124251334	C	C	124251334	2	2	214	1	0	0	0	0	0	0	0	1	2463	1277	45	4		4	C8orf76	8	124251334	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	6380647	124251334	22112688	703	166663											
FER1L6	654463	broad.mit.edu	37	chr8	125131773	125131773	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaagtgggagtcggaaaCacttcctggggtcttaagca	13	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125131773	A	A	125131773	1	1	214	0	1	0	0	0	0	0	0	0	5872	493	17	3		3	FER1L6	8	125131773	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	880439	125131773	21232249	704	166664											
ASAP1	50807	broad.mit.edu	37	chr8	131104234	131104234	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttaccccaaggaactgcgcCtttgtttgggggcccatgag	12	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131104234	A	A	131104234	3	1	214	1	0	0	0	0	1	0	0	0	1014	681	24	2	856	2	ASAP1	8	131104234	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	5972461	131104234	15259788	705	166665											
ADCY8	114	broad.mit.edu	37	chr8	131792956	131792956	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctcggtaatcaaaggCaaagccctggtccttcagga	9	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131792956	T	T	131792956	3	4	214	1	0	0	0	0	1	0	0	0	300	710	25	4	323	4	ADCY8	8	131792956	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	688722	131792956	14571066	706	166666											
TG	7038	broad.mit.edu	37	chr8	134145810	134145810	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggtggagagaactacaaGgagttcagtgagctgctccc	14	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134145810	C	C	134145810	3	2	214	1	0	0	0	0	1	0	0	0	15936	991	35	4	8280	4	TG	8	134145810	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2352854	134145810	12218212	707	166667											
ZFAT	57623	broad.mit.edu	37	chr8	135614084	135614084	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgatcacttcaccttgCgtctggactgagcttctgtg	11	10	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135614084	A	A	135614084	2	1	214	1	0	0	0	0	0	0	0	1	17758	755	27	3		3	ZFAT	8	135614084	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1468274	135614084	10749938	708	166668											
KHDRBS3	10656	broad.mit.edu	37	chr8	136637454	136637454	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcttgctcctcctgtgGgcctccttcatcagatgtca	7	15	5	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136637454	C	C	136637454	1	2	214	0	1	0	0	0	0	0	0	0	8218	1247	43	4		4	KHDRBS3	8	136637454	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1023370	136637454	9726568	709	166669											
FAM135B	51059	broad.mit.edu	37	chr8	139163754	139163754	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgaacggaatgggtcacAgtggggcacacagtgcctgc	15	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139163754	T	T	139163754	2	4	214	1	0	0	0	0	0	0	0	1	5495	175	7	5		5	FAM135B	8	139163754	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	2526300	139163754	7200268	710	166670											
TRAPPC9	83696	broad.mit.edu	37	chr8	141231580	141231580	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacgtggctgtagtcgcctGctttgttgctctcgggtggg	15	10	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141231580	C	C	141231580	3	2	214	1	0	0	0	0	1	0	0	0	16589	1319	46	4	940	4	TRAPPC9	8	141231580	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2067826	141231580	5132442	711	166671											
EIF2C2	27161	broad.mit.edu	37	chr8	141545586	141545586	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggatgccagcgtgactaCacaggtagaagtcgaactcg	12	11	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141545586	A	A	141545586	3	1	214	1	0	0	0	0	1	0	0	0	5046	478	17	3	339	3	EIF2C2	8	141545586	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	314006	141545586	4818436	712	166672											
SLC45A4	57210	broad.mit.edu	37	chr8	142228200	142228200	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaccaggtgaggaggtggcaGaggcacagccgcatcagctc	15	11	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142228200	C	C	142228200	2	2	214	1	0	0	0	0	0	0	0	1	14757	929	33	4		4	SLC45A4	8	142228200	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	682614	142228200	4135822	713	166673											
SLURP1	57152	broad.mit.edu	37	chr8	143823209	143823209	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacccagggctgccgtgggGcctggcctcacctgcctcca	13	18	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143823209	T	T	143823209	1	4	214	0	1	0	0	0	0	0	0	0	14870	1218	42	3		3	SLURP1	8	143823209	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1595009	143823209	2540813	714	166674											
CYP11B1	1584	broad.mit.edu	37	chr8	143957330	143957330	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagggtcagaccttgcaCaggaggactcagcccccggg	14	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143957330	A	A	143957330	1	1	214	0	1	0	0	0	0	0	0	0	4178	493	17	3		3	CYP11B1	8	143957330	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	134121	143957330	2406692	715	166675											
SCRIB	23513	broad.mit.edu	37	chr8	144874231	144874231	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcgctccaggggcccccgCgtgccccggccttcctggga	14	18	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144874231	A	A	144874231	2	1	214	1	0	0	0	0	0	0	0	1	14050	755	27	3		3	SCRIB	8	144874231	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	916901	144874231	1489791	716	166676											
PLEC	5339	broad.mit.edu	37	chr8	145011086	145011086	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatcaacccgccagccaagGagcccaggctaccctggaaa	11	15	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145011086	A	A	145011086	1	1	214	0	1	0	0	0	0	0	0	0	12147	1189	41	4		4	PLEC	8	145011086	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	136855	145011086	1352936	717	166677											
RANBP6	26953	broad.mit.edu	37	chr9	6012421	6012421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggcgtttggcacaaggatCctcatagttaatagtctcat	9	8	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6012421	A	A	6012421	3	1	214	1	0	0	0	0	1	0	0	0	13139	855	30	3	134	3	RANBP6	9	6012421	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08		6012421	135201010	718	166678											
KDM4C	23081	broad.mit.edu	37	chr9	7015830	7015830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaaaagacctaacgcatGgatacatactattattttat	6	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7015830	T	T	7015830	1	4	214	0	1	0	0	0	0	0	0	0	8200	1363	47	2		2	KDM4C	9	7015830	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1003409	7015830	134197601	719	166679											
PTPRD	5789	broad.mit.edu	37	chr9	8507349	8507349	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accagttcatagttggcaatGgtatctgaacgtggaggtgt	13	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8507349	A	A	8507349	2	1	214	1	0	0	0	0	0	0	0	1	12907	1335	47	4		4	PTPRD	9	8507349	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1491519	8507349	132706082	720	166680											
MPDZ	8777	broad.mit.edu	37	chr9	13137969	13137969	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttacctctagaagctcaTctgcaatttgcaatcgacca	5	12	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13137969	A	A	13137969	3	1	214	1	0	0	0	0	1	0	0	0	9816	1435	50	5	2010	5	MPDZ	9	13137969	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	4630620	13137969	128075462	721	166681											
MPDZ	8777	broad.mit.edu	37	chr9	13221528	13221528	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctcatatatgaatttgTagaaatttacaaagcactac	5	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13221528	C	C	13221528	1	2	214	0	1	0	0	0	0	0	0	0	9816	1653	57	5		5	MPDZ	9	13221528	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	83559	13221528	127991903	722	166682											
CNTLN	54875	broad.mit.edu	37	chr9	17143191	17143191	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagttatacaactagggatCaagtaattgttttttcattt	7	4	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17143191	G	G	17143191	1	3	214	0	1	0	0	0	0	0	0	0	3671	841	29	4		4	CNTLN	9	17143191	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3921663	17143191	124070240	723	166683											
PLIN2	123	broad.mit.edu	37	chr9	19116449	19116449	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccccttgctagaagtgaGgaggctgtcagacacttctt	11	11	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19116449	A	A	19116449	3	1	214	1	0	0	0	0	1	0	0	0	12185	1000	35	4	206	4	PLIN2	9	19116449	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1973258	19116449	122096982	724	166684											
KLHL9	55958	broad.mit.edu	37	chr9	21334826	21334826	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcaaatgggcagagacGcccatttcgccgttaccaag	12	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21334826	A	A	21334826	2	1	214	1	0	0	0	0	0	0	0	1	8467	1074	38	4		4	KLHL9	9	21334826	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2218377	21334826	119878605	725	166685											
TEK	7010	broad.mit.edu	37	chr9	27183579	27183579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactaatgaagaaatgaccCtggtgaagccggatgggaca	12	8	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27183579	A	A	27183579	3	1	214	1	0	0	0	0	1	0	0	0	15873	680	24	2	1183	2	TEK	9	27183579	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	5848753	27183579	114029852	726	166686											
DDX58	23586	broad.mit.edu	37	chr9	32492480	32492480	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagttttccttgtctgatctGagaaggcattccaccaattt	7	10	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32492480	A	A	32492480	2	1	214	1	0	0	0	0	0	0	0	1	4408	1277	45	4		4	DDX58	9	32492480	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	5308901	32492480	108720951	727	166687											
TAF1L	138474	broad.mit.edu	37	chr9	32632339	32632339	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgacattcctctttgtaaCgctcttgatgctcagccaca	7	13	3	2	rs145748175	by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32632339	T	T	32632339	3	4	214	1	0	0	0	0	1	0	0	0	15642	536	19	4	2245	4	TAF1L	9	32632339	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	139859	32632339	108581092	728	166688											
DCAF12	25853	broad.mit.edu	37	chr9	34126386	34126386	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtcgctcccagctcccggcGaggcgggcgctttccgcttc	13	18	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34126386	A	A	34126386	3	1	214	1	0	0	0	0	1	0	0	0	4296	1059	37	4	1353	4	DCAF12	9	34126386	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1494047	34126386	107087045	729	166689											
GALT	2592	broad.mit.edu	37	chr9	34648934	34648934	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggctaggcactggatggAggttgctcccagtagggtca	17	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34648934	C	C	34648934	1	2	214	0	1	0	0	0	0	0	0	0	6292	319	11	5		5	GALT	9	34648934	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	522548	34648934	106564497	730	166690											
TLN1	7094	broad.mit.edu	37	chr9	35704723	35704723	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggtgtaggcatcactGgggctgcactgcagggcgcc	15	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35704723	A	A	35704723	2	1	214	1	0	0	0	0	0	0	0	1	16070	1335	47	4		4	TLN1	9	35704723	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1055789	35704723	105508708	731	166691											
GNE	10020	broad.mit.edu	37	chr9	36229173	36229173	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaagaataaagaaattatCagtgtactatgctcataatt	5	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36229173	G	G	36229173	1	3	214	0	1	0	0	0	0	0	0	0	6586	841	29	4		4	GNE	9	36229173	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	524450	36229173	104984258	732	166692											
FRMPD1	22844	broad.mit.edu	37	chr9	37731137	37731137	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctaaaataacagtggttGttctcaaagatggtgcactg	9	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37731137	T	T	37731137	1	4	214	0	1	0	0	0	0	0	0	0	6117	1392	48	3		3	FRMPD1	9	37731137	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1501964	37731137	103482294	733	166693											
FAM75A6	389730	broad.mit.edu	37	chr9	43630714	43630714	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctccatgtgaataggcacGttgctttcaagcaactgagc	9	10	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43630714	C	C	43630714	1	2	214	0	1	0	0	0	0	0	0	0	5674	1160	40	4		4	FAM75A6	9	43630714	5'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	5899577	43630714	97582717	734	166694											
TMEM2	23670	broad.mit.edu	37	chr9	74315540	74315540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggaataattctcattccCtggtttcactgaattacccc	5	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74315540	A	A	74315540	1	1	214	0	1	0	0	0	0	0	0	0	16244	696	24	2		2	TMEM2	9	74315540	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	30684826	74315540	66897891	735	166695											
ALDH1A1	216	broad.mit.edu	37	chr9	75526984	75526984	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acattccagtttggccccttCtttcttcccactctcaatga	4	15	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75526984	G	G	75526984	3	3	214	1	0	0	0	0	1	0	0	0	490	922	32	4	431	4	ALDH1A1	9	75526984	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1211444	75526984	65686447	736	166696											
VPS13A	23230	broad.mit.edu	37	chr9	79929647	79929647	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atatattttacagaattcatCtccagaattgcacgttcatt	4	8	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79929647	G	G	79929647	1	3	214	0	1	0	0	0	0	0	0	0	17316	928	32	4		4	VPS13A	9	79929647	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4402663	79929647	61283784	737	166697											
FRMD3	257019	broad.mit.edu	37	chr9	85950546	85950546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcaggatcgtaatcacCaagctcagctgtaatgagtg	9	10	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85950546	A	A	85950546	3	1	214	1	0	0	0	0	1	0	0	0	6110	594	21	2	1348	2	FRMD3	9	85950546	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6020899	85950546	55262885	738	166698											
NTRK2	4915	broad.mit.edu	37	chr9	87360083	87360083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaataagacacttttattGttcagatataaatagggtgt	7	4	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87360083	T	T	87360083	1	4	214	0	1	0	0	0	0	0	0	0	10802	1392	48	3		3	NTRK2	9	87360083	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1409537	87360083	53853348	739	166699											
DAPK1	1612	broad.mit.edu	37	chr9	90315016	90315016	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcactgctgaggaggctGctgctcttcccttaggtttg	12	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90315016	T	T	90315016	1	4	214	0	1	0	0	0	0	0	0	0	4268	1334	46	3		3	DAPK1	9	90315016	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2954933	90315016	50898415	740	166700											
FAM75C1	441452	broad.mit.edu	37	chr9	90538003	90538003	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgctgaagctgagaggCtcatgacagcagttggacag	15	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90538003	A	A	90538003	3	1	214	1	0	0	0	0	1	0	0	0	5676	797	28	3	3195	3	FAM75C1	9	90538003	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	222987	90538003	50675428	741	166701											
NFIL3	4783	broad.mit.edu	37	chr9	94173119	94173119	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taaaatccatcaatattcttCcttttgttctaccgtctggg	5	10	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94173119	T	T	94173119	1	4	214	0	1	0	0	0	0	0	0	0	10468	870	30	4		4	NFIL3	9	94173119	5'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	3635116	94173119	47040312	742	166702											
IARS	3376	broad.mit.edu	37	chr9	95022602	95022602	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tacaaatcatttgcaaacagGaatatacaaaatgaaatggg	7	5	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95022602	T	T	95022602	1	4	214	0	1	0	0	0	0	0	0	0	7543	1189	41	3		3	IARS	9	95022602	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	849483	95022602	46190829	743	166703											
OR13F1	138805	broad.mit.edu	37	chr9	107266505	107266505	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatatgtgtgacgttaatCcttctatgcatacgtacagg	8	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107266505	A	A	107266505	1	1	214	0	1	0	0	0	0	0	0	0	11035	870	30	3		3	OR13F1	9	107266505	5'Flank	SNP	C	TCGA-75-5126-01A-01D-1753-08	12243903	107266505	33946926	744	166704											
RAD23B	5887	broad.mit.edu	37	chr9	110062546	110062547	+	Intron	DEL	TC	-	-													aacatgccatgtcttgatatTcttttagttttagaaatgtt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110062547	-	-	110062546	6	5	214	0	1	1	0	1	0	0	0	0	13091	1798	62	0		0	RAD23B	9	110062546	Intron	DEL	TC	TCGA-75-5126-01A-01D-1753-08	2796041	110062546	31150885	745	166705											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112705113	112705113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtagtgtatgaggtgcGctcaggaggcaccgtagtag	15	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112705113	T	T	112705113	3	4	214	1	0	0	0	0	1	0	0	0	11504	1087	38	3		3	PALM2-AKAP2	9	112705113	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2642567	112705113	28508318	746	166706											
SVEP1	79987	broad.mit.edu	37	chr9	113173599	113173599	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acatgggggaagggttccacTgcccacctctcatacattca	9	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113173599	A	A	113173599	3	1	214	1	0	0	0	0	1	0	0	0	15538	1580	55	5	4371	5	SVEP1	9	113173599	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	468486	113173599	28039832	747	166707											
COL27A1	85301	broad.mit.edu	37	chr9	117033025	117033025	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggagagccaggccttgaGggtgacagtggccccatggg	18	10	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117033025	T	T	117033025	3	4	214	1	0	0	0	0	1	0	0	0	3717	991	35	2	3715	2	COL27A1	9	117033025	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3859426	117033025	24180406	748	166708											
TNC	3371	broad.mit.edu	37	chr9	117840627	117840627	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgactttactttgcctttctGaaccttagtttttggtttga	7	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117840627	T	T	117840627	1	4	214	0	1	0	0	0	0	0	0	0	16393	1305	45	3		3	TNC	9	117840627	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	807602	117840627	23372804	749	166709											
ASTN2	23245	broad.mit.edu	37	chr9	119187757	119187757	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggtctcctccaggggtcCatggcaggaagaaagcagag	14	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119187757	A	A	119187757	1	1	214	0	1	0	0	0	0	0	0	0	1069	609	21	2		2	ASTN2	9	119187757	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1347130	119187757	22025674	750	166710											
TLR4	7099	broad.mit.edu	37	chr9	120466850	120466850	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctgcgtggaggtatgtGgctggagtcagctcctctga	15	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120466850	T	T	120466850	1	4	214	0	1	0	0	0	0	0	0	0	16076	1363	47	2		2	TLR4	9	120466850	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1279093	120466850	20746581	751	166711											
TRAF1	7185	broad.mit.edu	37	chr9	123675735	123675735	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctcaaacacacgcagcttCccctccagctcagccagaag	6	17	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123675735	G	G	123675735	2	3	214	1	0	0	0	0	0	0	0	1	16561	842	30	4		4	TRAF1	9	123675735	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	3208885	123675735	17537696	752	166712											
OR1J2	26740	broad.mit.edu	37	chr9	125273228	125273228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcatcatgctgctcatcCagctggactctcaccttcac	6	16	5	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125273228	A	A	125273228	3	1	214	1	0	0	0	0	1	0	0	0	11054	595	21	2	150	2	OR1J2	9	125273228	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1597493	125273228	15940203	753	166713											
DENND1A	57706	broad.mit.edu	37	chr9	126414281	126414281	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagccagtcttaagacTgtctactcacagtgctgagt	8	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126414281	A	A	126414281	1	1	214	0	1	0	0	0	0	0	0	0	4466	1595	55	5		5	DENND1A	9	126414281	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1141053	126414281	14799150	754	166714											
CDK9	1025	broad.mit.edu	37	chr9	130551824	130551824	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgagcgcgtcttctgagGgccggcgcttgccactaggg	16	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130551824	T	T	130551824	1	4	214	0	1	0	0	0	0	0	0	0	3181	1247	43	2		2	CDK9	9	130551824	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	4137543	130551824	10661607	755	166715											
ST6GALNAC6	30815	broad.mit.edu	37	chr9	130653383	130653383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctggccctgtgctccataCatccaggcctccaggaccca	9	17	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130653383	A	A	130653383	1	1	214	0	1	0	0	0	0	0	0	0	15346	493	17	3		3	ST6GALNAC6	9	130653383	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	101559	130653383	10560048	756	166716											
DNM1	1759	broad.mit.edu	37	chr9	131004653	131004653	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggccagtggtcatcaaggGgctgggctggtggacagagt	19	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131004653	T	T	131004653	1	4	214	0	1	0	0	0	0	0	0	0	4710	1247	43	2		2	DNM1	9	131004653	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	351270	131004653	10208778	757	166717											
ODF2	4957	broad.mit.edu	37	chr9	131231635	131231635	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggttgtctgaagtctgaggtGagggaggtagggggctggga	22	3	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131231635	C	C	131231635	1	2	214	0	1	0	0	0	0	0	0	0	10922	1305	45	4		4	ODF2	9	131231635	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	226982	131231635	9981796	758	166718											
USP20	10868	broad.mit.edu	37	chr9	132623118	132623118	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcccagtagggccttccGggcagtagggctggacttcc	14	13	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132623118	T	T	132623118	1	4	214	0	1	0	0	0	0	0	0	0	17178	1131	39	1		1	USP20	9	132623118	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1391483	132623118	8590313	759	166719											
TTF1	7270	broad.mit.edu	37	chr9	135266129	135266129	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaatccacctcttttaactCctggggagacatcttcttca	7	12	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135266129	G	G	135266129	3	3	214	1	0	0	0	0	1	0	0	0	16844	864	30	4	660	4	TTF1	9	135266129	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2643011	135266129	5947302	760	166720											
COL5A1	1289	broad.mit.edu	37	chr9	137688239	137688239	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaactccggaggtgacgGcccagctggccctcctggtg	16	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137688239	T	T	137688239	3	4	214	1	0	0	0	0	1	0	0	0	3728	1203	42	3	2957	3	COL5A1	9	137688239	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2422110	137688239	3525192	761	166721											
OLFM1	10439	broad.mit.edu	37	chr9	137998651	137998651	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcaagacctccggctcgAggttcggatcctggatgaca	12	12	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137998651	T	T	137998651	3	4	214	1	0	0	0	0	1	0	0	0	10947	295	11	5	707	5	OLFM1	9	137998651	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	310412	137998651	3214780	762	166722											
ARRDC1	92714	broad.mit.edu	37	chr9	140508733	140508733	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcctgcgcaggctcacAggctggtccttccccagaaa	12	15	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140508733	T	T	140508733	1	4	214	0	1	0	0	0	0	0	0	0	986	203	7	5		5	ARRDC1	9	140508733	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	2510082	140508733	704698	763	166723											
ZMYND11	10771	broad.mit.edu	37	chr10	286917	286917	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tctgttatccttgtgtatgtGaaatttttacctcaagtgtg	8	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	286917	C	C	286917	1	2	214	0	1	0	0	0	0	0	0	0	17832	1305	45	4		4	ZMYND11	10	286917	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08		286917	135247830	764	166724											
IDI2	91734	broad.mit.edu	37	chr10	1066897	1066897	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagtgaatatattaaatAcaaatgcagatgcttcatgt	7	4	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1066897	T	T	1066897	1	4	214	0	1	0	0	0	0	0	0	0	7570	406	14	5		5	IDI2	10	1066897	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	779980	1066897	134467850	765	166725											
ITIH5	80760	broad.mit.edu	37	chr10	7657998	7657998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcaagcacgaataccaCattcttgggtaaaggaggaa	11	8	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7657998	A	A	7657998	3	1	214	1	0	0	0	0	1	0	0	0	7977	478	17	3	2097	3	ITIH5	10	7657998	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6591101	7657998	127876749	766	166726											
ITIH2	3698	broad.mit.edu	37	chr10	7785208	7785208	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaatcctcaacctggtttCtgacccagaatcaggtaaaa	6	10	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7785208	G	G	7785208	3	3	214	1	0	0	0	0	1	0	0	0	7974	913	32	4	2261	4	ITIH2	10	7785208	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	127210	7785208	127749539	767	166727											
MRC1	4360	broad.mit.edu	37	chr10	18138749	18138749	+	Intron	DEL	C	-	-													aatcctgggagcacccctttCtacccaactctggaaaattc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18138749	-	-	18138749	6	5	214	0	1	1	0	1	0	0	0	0	9850	928	32	0		0	MRC1	10	18138749	Intron	DEL	C	TCGA-75-5126-01A-01D-1753-08	10353541	18138749	117395998	768	166728											
CACNB2	783	broad.mit.edu	37	chr10	18789699	18789699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagaacaaggatttgacCttctgtgcactgatttttaa	9	6	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18789699	A	A	18789699	1	1	214	0	1	0	0	0	0	0	0	0	2579	696	24	2		2	CACNB2	10	18789699	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	650950	18789699	116745048	769	166729											
MLLT10	8028	broad.mit.edu	37	chr10	21884230	21884230	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttgctttcgataaaactgAaaagatgacatttatttatt	5	4	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21884230	T	T	21884230	1	4	214	0	1	0	0	0	0	0	0	0	9719	261	9	5		5	MLLT10	10	21884230	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	3094531	21884230	113650517	770	166730											
ARMC3	219681	broad.mit.edu	37	chr10	23290987	23290987	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaattatgcaggctcgggtGagtggatgccatctcaagtt	13	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23290987	T	T	23290987	1	4	214	0	1	0	0	0	0	0	0	0	956	1305	45	3		3	ARMC3	10	23290987	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1406757	23290987	112243760	771	166731											
ABI1	10006	broad.mit.edu	37	chr10	27149637	27149637	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtcactccggcgggtcctCgacccggccagcgcccgccg	14	19	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27149637	A	A	27149637	1	1	214	0	1	0	0	0	0	0	0	0	88	899	31	3		3	ABI1	10	27149637	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3858650	27149637	108385110	772	166732											
ZNF25	219749	broad.mit.edu	37	chr10	38242063	38242063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaagaacttcccacattcCttacattcacaggctttctc	4	14	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38242063	A	A	38242063	3	1	214	1	0	0	0	0	1	0	0	0	17920	680	24	2	1011	2	ZNF25	10	38242063	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	11092426	38242063	97292684	773	166733											
RBP3	5949	broad.mit.edu	37	chr10	48388080	48388080	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgggcaccttggcacgcAgagccactatgtcctgggct	13	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48388080	C	C	48388080	3	2	214	1	0	0	0	0	1	0	0	0	13265	188	7	5	961	5	RBP3	10	48388080	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	10146017	48388080	87146667	774	166734											
DRGX	644168	broad.mit.edu	37	chr10	50599243	50599243	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgtcgtccggttccggcgCtgttttctacgcagaaaccc	10	14	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50599243	A	A	50599243	3	1	214	1	0	0	0	0	1	0	0	0	4803	796	28	3	711	3	DRGX	10	50599243	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2211163	50599243	84935504	775	166735											
ERCC6	2074	broad.mit.edu	37	chr10	50708780	50708781	+	Intron	INS	-	A	A													acaagaaaagagaaaatggcINSaaatggtggataatacagat							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50708781	A	A	50708780	6	5	214	0	1	1	1	0	0	0	0	0	5259	725	25	0		0	ERCC6	10	50708780	Intron	INS	-	TCGA-75-5126-01A-01D-1753-08	109537	50708780	84825967	776	166736											
SLC18A3	6572	broad.mit.edu	37	chr10	50820238	50820238	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgttccgagcgcgatgtGctgcttgatgagccaccgca	12	14	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50820238	T	T	50820238	2	4	214	1	0	0	0	0	0	0	0	1	14540	1306	46	3		3	SLC18A3	10	50820238	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	111458	50820238	84714509	777	166737											
CHAT	1103	broad.mit.edu	37	chr10	50863531	50863531	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacctcacaacactgcacttGagctgtgcctggggcctgcc	10	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50863531	C	C	50863531	1	2	214	0	1	0	0	0	0	0	0	0	3344	1305	45	4		4	CHAT	10	50863531	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	43293	50863531	84671216	778	166738											
PARG	8505	broad.mit.edu	37	chr10	51472680	51472680	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaagggaagtgtaagtcaaActtatcaaagtgtattattt	10	3	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51472680	T	T	51472680	1	4	214	0	1	0	0	0	0	0	0	0	11542	58	2	5		5	PARG	10	51472680	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	609149	51472680	84062067	779	166739											
PCDH15	65217	broad.mit.edu	37	chr10	55568824	55568825	+	Missense_Mutation	DNP	TG	GT	GT													tcaaccatgggccttcttctTgcaagcacaatgtttttcct							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	55568825	GT	GT	55568824	3	3	214	1	0	0	0	0	1	0	0	0	11605	1799	63	5	930	5	PCDH15	10	55568824	Missense_Mutation	DNP	TG	TCGA-75-5126-01A-01D-1753-08	4096144	55568824	79965923	780	166740											
BICC1	80114	broad.mit.edu	37	chr10	60549174	60549174	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccgaatgtatggtgctacTgtcatagtacgagggtctca	11	9	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60549174	A	A	60549174	2	1	214	1	0	0	0	0	0	0	0	1	1433	1567	55	5		5	BICC1	10	60549174	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	4980350	60549174	74985573	781	166741											
ANK3	288	broad.mit.edu	37	chr10	61941081	61941081	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtggcaagggagggccGtatacctttgtctgggcgtc	16	10	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61941081	A	A	61941081	1	1	214	0	1	0	0	0	0	0	0	0	622	1160	40	4		4	ANK3	10	61941081	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1391907	61941081	73593666	782	166742											
CTNNA3	29119	broad.mit.edu	37	chr10	67726441	67726441	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcagattttcagttggtGggagtagaacttaatctgtt	11	5	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67726441	A	A	67726441	3	1	214	1	0	0	0	0	1	0	0	0	4048	1348	47	4	366	4	CTNNA3	10	67726441	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5785360	67726441	67808306	783	166743											
PBLD	64081	broad.mit.edu	37	chr10	70048653	70048653	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tataaatctgggtactcagcCctccccaaagtgctgatgca	8	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70048653	G	G	70048653	1	3	214	0	1	0	0	0	0	0	0	0	11583	638	22	4		4	PBLD	10	70048653	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2322212	70048653	65486094	784	166744											
COL13A1	1305	broad.mit.edu	37	chr10	71654493	71654493	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttcctagagtctccatctCaggaaatggcctcccagttg	9	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71654493	A	A	71654493	1	1	214	0	1	0	0	0	0	0	0	0	3702	841	29	3		3	COL13A1	10	71654493	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1605840	71654493	63880254	785	166745											
ECD	11319	broad.mit.edu	37	chr10	74914000	74914000	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagagaaactaaatgaccaaGatagaaatctcaccgatgtc	7	8	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74914000	C	C	74914000	1	2	214	0	1	0	0	0	0	0	0	0	4928	957	33	4		4	ECD	10	74914000	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	3259507	74914000	60620747	786	166746											
USP54	159195	broad.mit.edu	37	chr10	75283501	75283501	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agttcacttttagaagatatCtcctcacctgtaatataagc	5	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75283501	G	G	75283501	3	3	214	1	0	0	0	0	1	0	0	0	17212	912	32	4	2884	4	USP54	10	75283501	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	369501	75283501	60251246	787	166747											
ADK	132	broad.mit.edu	37	chr10	75936567	75936567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgctgtggtacctgctGctgcccgagcggacgtagag	15	11	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75936567	T	T	75936567	1	4	214	0	1	0	0	0	0	0	0	0	320	1334	46	3		3	ADK	10	75936567	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	653066	75936567	59598180	788	166748											
GRID1	2894	broad.mit.edu	37	chr10	87487604	87487604	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccctggatctgctatggGgacctaccttgctgatgagc	11	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87487604	C	C	87487604	1	2	214	0	1	0	0	0	0	0	0	0	6837	1247	43	4		4	GRID1	10	87487604	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	11551037	87487604	48047143	789	166749											
NOC3L	64318	broad.mit.edu	37	chr10	96099595	96099595	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgaaggcaagagctcgCtgctgagaaacttgctttct	11	8	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96099595	T	T	96099595	2	4	214	1	0	0	0	0	0	0	0	1	10609	796	28	4		4	NOC3L	10	96099595	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	8611991	96099595	39435152	790	166750											
CC2D2B	387707	broad.mit.edu	37	chr10	97763935	97763935	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggacatgattatagcttctCaagcttatctaaaataaaag	6	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97763935	G	G	97763935	1	3	214	0	1	0	0	0	0	0	0	0	2755	841	29	4		4	CC2D2B	10	97763935	5'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1664340	97763935	37770812	791	166751											
SLIT1	6585	broad.mit.edu	37	chr10	98781170	98781170	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggttggcaccaatggcCctgagcagaaagcagagaga	16	8	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98781170	A	A	98781170	2	1	214	1	0	0	0	0	0	0	0	1	14853	637	22	2		2	SLIT1	10	98781170	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1017235	98781170	36753577	792	166752											
RRP12	23223	broad.mit.edu	37	chr10	99126286	99126286	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagccatgcccggctcctcTgtcgtgccagcttccgctgc	10	18	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99126286	C	C	99126286	3	2	214	1	0	0	0	0	1	0	0	0	13797	1580	55	5	613	5	RRP12	10	99126286	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	345116	99126286	36408461	793	166753											
LZTS2	84445	broad.mit.edu	37	chr10	102763281	102763281	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaacatggagaagatcctGatccgcccaacagccttcaa	8	13	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102763281	A	A	102763281	2	1	214	1	0	0	0	0	0	0	0	1	9227	1277	45	4		4	LZTS2	10	102763281	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	3636995	102763281	32771466	794	166754											
CALHM1	255022	broad.mit.edu	37	chr10	105215108	105215108	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccatcagcggtggctcctCctggcccagccgcagaggcg	14	17	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105215108	G	G	105215108	3	3	214	1	0	0	0	0	1	0	0	0	2608	864	30	4	92	4	CALHM1	10	105215108	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2451827	105215108	30319639	795	166755											
COL17A1	1308	broad.mit.edu	37	chr10	105814996	105814996	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaccaacagatacctccCaacagataccataagatcat	3	12	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105814996	A	A	105814996	1	1	214	0	1	0	0	0	0	0	0	0	3706	609	21	2		2	COL17A1	10	105814996	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	599888	105814996	29719751	796	166756											
SORCS3	22986	broad.mit.edu	37	chr10	106917010	106917010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgcaagctccggatgtgGacctgagaggaagcccagtg	15	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106917010	T	T	106917010	3	4	214	1	0	0	0	0	1	0	0	0	15046	1174	41	3	1635	3	SORCS3	10	106917010	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1102014	106917010	28617737	797	166757											
SORCS3	22986	broad.mit.edu	37	chr10	107005172	107005172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatcacagttttaagaaacGgtataacgtttgtttgtttg	8	4	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107005172	T	T	107005172	1	4	214	0	1	0	0	0	0	0	0	0	15046	1131	39	1		1	SORCS3	10	107005172	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	88162	107005172	28529575	798	166758											
ADD3	120	broad.mit.edu	37	chr10	111878265	111878265	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccttttacaaaaaggtttGctaccccctggtttagcttg	8	10	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111878265	T	T	111878265	1	4	214	0	1	0	0	0	0	0	0	0	306	1334	46	3		3	ADD3	10	111878265	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4873093	111878265	23656482	799	166759											
PNLIPRP1	5407	broad.mit.edu	37	chr10	118364835	118364835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagaaaacagcagcctgGcattgtatggtaattagaac	11	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118364835	T	T	118364835	1	4	214	0	1	0	0	0	0	0	0	0	12245	1218	42	3		3	PNLIPRP1	10	118364835	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	6486570	118364835	17169912	800	166760											
EIF3A	8661	broad.mit.edu	37	chr10	120820376	120820376	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctataaaatccattaaattGaaagagaatcacactttcta	3	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120820376	T	T	120820376	1	4	214	0	1	0	0	0	0	0	0	0	5052	1305	45	3		3	EIF3A	10	120820376	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2455541	120820376	14714371	801	166761											
EIF3A	8661	broad.mit.edu	37	chr10	120820464	120820464	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaacatcatccaatgcaaaGaaatacaaaatgtatcatga	4	7	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120820464	C	C	120820464	1	2	214	0	1	0	0	0	0	0	0	0	5052	957	33	4		4	EIF3A	10	120820464	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	88	120820464	14714283	802	166762											
TACC2	10579	broad.mit.edu	37	chr10	123845089	123845089	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaagcagctgatggttgttCcccactctggggcttgagta	13	9	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123845089	T	T	123845089	3	4	214	1	0	0	0	0	1	0	0	0	15621	855	30	4	3084	4	TACC2	10	123845089	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3024625	123845089	11689658	803	166763											
MKI67	4288	broad.mit.edu	37	chr10	129913972	129913972	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcttccaaaagggagattCattttttttgctattgtcaa	7	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129913972	A	A	129913972	4	1	214	1	0	0	0	0	0	1	0	0	9691	835	29	3	9106	3	MKI67	10	129913972	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6068883	129913972	5620775	804	166764											
ANO9	338440	broad.mit.edu	37	chr11	419809	419809	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccacccccggccaacaCggggcctgccgtgtctctgt	10	20	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	419809	A	A	419809	1	1	214	0	1	0	0	0	0	0	0	0	704	551	19	3		3	ANO9	11	419809	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08		419809	134586707	805	166765											
CTSD	1509	broad.mit.edu	37	chr11	1774823	1774823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgaagacgtcgcccaggatCcagagtggcccgctgggtgg	16	11	0	3	rs121912790		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1774823	A	A	1774823	3	1	214	1	0	0	0	0	1	0	0	0	4066	856	30	3	93	3	CTSD	11	1774823	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1355014	1774823	133231693	806	166766											
OR51F2	119694	broad.mit.edu	37	chr11	4843137	4843137	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtcatgttgccagtcatGctctttgtcaagaggttgtc	11	10	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4843137	T	T	4843137	3	4	214	1	0	0	0	0	1	0	0	0	11191	1319	46	3	524	3	OR51F2	11	4843137	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3068314	4843137	130163379	807	166767											
UBQLNL	143630	broad.mit.edu	37	chr11	5537461	5537461	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacccatgaagaccagcaCtagttggtccatctggcatt	9	12	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5537461	A	A	5537461	3	1	214	1	0	0	0	0	1	0	0	0	17026	565	20	3	1220	3	UBQLNL	11	5537461	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	694324	5537461	129469055	808	166768											
HBG2	3048	broad.mit.edu	37	chr11	5566773	5566773	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaatctcagcccctaaagaCagagggtgattaaggataga	10	7	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5566773	T	T	5566773	1	4	214	0	1	0	0	0	0	0	0	0	7049	493	17	4		4	HBG2	11	5566773	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	29312	5566773	129439743	809	166769											
OR52N1	79473	broad.mit.edu	37	chr11	5809298	5809298	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaacataggtgaggactAtggcacagaagtgggcagtg	16	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5809298	G	G	5809298	3	3	214	1	0	0	0	0	1	0	0	0	11221	449	16	5	216	5	OR52N1	11	5809298	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	242525	5809298	129197218	810	166770											
TPP1	1200	broad.mit.edu	37	chr11	6638099	6638100	+	Intron	DNP	GG	AA	AA													ctgctccaggaactatggagGgagtcagagcagagatcgtg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	6638100	AA	AA	6638099	1	1	214	0	1	0	0	0	0	0	0	0	16535	1247	43	4		4	TPP1	11	6638099	Intron	DNP	GG	TCGA-75-5126-01A-01D-1753-08	828801	6638099	128368417	811	166771											
OR2AG1	144125	broad.mit.edu	37	chr11	6807219	6807220	+	3'UTR	DNP	GG	TT	TT													ccagcacactccacgctctaGggaaggatcatggctagctt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	6807220	TT	TT	6807219	1	4	214	0	1	0	0	0	0	0	0	0	11078	995	35	2		2	OR2AG1	11	6807219	3'UTR	DNP	GG	TCGA-75-5126-01A-01D-1753-08	169120	6807219	128199297	812	166772											
NLRP14	338323	broad.mit.edu	37	chr11	7070902	7070902	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatatttttcttctgaagGttgaaatttatcactttccc	5	8	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7070902	T	T	7070902	2	4	214	1	0	0	0	0	0	0	0	1	10571	1275	44	3		3	NLRP14	11	7070902	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	263683	7070902	127935614	813	166773											
OLFML1	283298	broad.mit.edu	37	chr11	7530705	7530705	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacacacatggctcttggatGaaagatgctgtctataactc	9	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7530705	A	A	7530705	3	1	214	1	0	0	0	0	1	0	0	0	10951	1290	45	4	505	4	OLFML1	11	7530705	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	459803	7530705	127475811	814	166774											
DKK3	27122	broad.mit.edu	37	chr11	11990115	11990115	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggaagggccaggcccgCttccattccccattcttgac	9	17	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11990115	T	T	11990115	1	4	214	0	1	0	0	0	0	0	0	0	4586	812	28	4		4	DKK3	11	11990115	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4459410	11990115	123016401	815	166775											
PDE3B	5140	broad.mit.edu	37	chr11	14695563	14695563	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcaggaagttaaaagagcTgttttcgtctggtaattaag	12	4	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14695563	C	C	14695563	1	2	214	0	1	0	0	0	0	0	0	0	11732	1595	55	5		5	PDE3B	11	14695563	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	2705448	14695563	120310953	816	166776											
INSC	387755	broad.mit.edu	37	chr11	15198741	15198741	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatagatctcccagggtctGcccacccgacctctggcagg	10	17	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15198741	C	C	15198741	1	2	214	0	1	0	0	0	0	0	0	0	7834	1334	46	4		4	INSC	11	15198741	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	503178	15198741	119807775	817	166777											
MYOD1	4654	broad.mit.edu	37	chr11	17741348	17741348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatggagctactgtcgccaCcgctccgcgacgtagacctg	11	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17741348	A	A	17741348	3	1	214	1	0	0	0	0	1	0	0	0	10182	507	18	3	21	3	MYOD1	11	17741348	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2542607	17741348	117265168	818	166778											
MRGPRX4	117196	broad.mit.edu	37	chr11	18194908	18194908	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcacggtgctgacgtgCatcatttcccttgtcggact	10	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18194908	A	A	18194908	4	1	214	1	0	0	0	0	0	1	0	0	9863	718	25	3	107	3	MRGPRX4	11	18194908	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	453560	18194908	116811608	819	166779											
LDHA	3939	broad.mit.edu	37	chr11	18424527	18424527	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacccattaagctgtcatGggtgggtccttggggaacat	12	9	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18424527	T	T	18424527	3	4	214	1	0	0	0	0	1	0	0	0	8770	1348	47	2	664	2	LDHA	11	18424527	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	229619	18424527	116581989	820	166780											
NAV2	89797	broad.mit.edu	37	chr11	20129113	20129113	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatccctcagaacgtctagGgtccctcctgtgaagggtgc	11	14	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20129113	C	C	20129113	1	2	214	0	1	0	0	0	0	0	0	0	10278	1247	43	4		4	NAV2	11	20129113	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1704586	20129113	114877403	821	166781											
KCNA4	3739	broad.mit.edu	37	chr11	30032746	30032746	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcaaaatacacagcacTagaaaagaggatgaccccaa	7	11	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30032746	A	A	30032746	3	1	214	1	0	0	0	0	1	0	0	0	8075	1522	53	5	485	5	KCNA4	11	30032746	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	9903633	30032746	104973770	822	166782											
CCDC73	493860	broad.mit.edu	37	chr11	32674742	32674742	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatttgttgccgaagtaacTgctgcatatgttggaaagaa	11	5	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32674742	A	A	32674742	3	1	214	1	0	0	0	0	1	0	0	0	2874	1580	55	5	2401	5	CCDC73	11	32674742	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	2641996	32674742	102331774	823	166783											
CCDC73	493860	broad.mit.edu	37	chr11	32724510	32724510	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttttaaaaattatgacAagttaaaacacaaattctag	4	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32724510	G	G	32724510	1	3	214	0	1	0	0	0	0	0	0	0	2874	145	5	5		5	CCDC73	11	32724510	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	49768	32724510	102282006	824	166784											
QSER1	79832	broad.mit.edu	37	chr11	32990724	32990724	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacttattagcaaaactcaAtggcagtcatagtcttaagt	7	7	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32990724	G	G	32990724	1	3	214	0	1	0	0	0	0	0	0	0	12990	116	4	5		5	QSER1	11	32990724	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	266214	32990724	102015792	825	166785											
HIPK3	10114	broad.mit.edu	37	chr11	33308507	33308507	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccactggagaaggtgactatCagttagtacagcatgaagtc	11	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33308507	T	T	33308507	4	4	214	1	0	0	0	0	0	1	0	0	7185	827	29	4	549	4	HIPK3	11	33308507	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	317783	33308507	101698009	826	166786											
PAMR1	25891	broad.mit.edu	37	chr11	35463205	35463205	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctggtacccattgactGggcccccagggtctgagcag	12	12	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35463205	T	T	35463205	3	4	214	1	0	0	0	0	1	0	0	0	11507	1348	47	2	1325	2	PAMR1	11	35463205	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2154698	35463205	99543311	827	166787											
SYT13	57586	broad.mit.edu	37	chr11	45274079	45274079	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgtgacgggagaagcggtCgcaggtcctcaaggtcagcg	17	10	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45274079	G	G	45274079	3	3	214	1	0	0	0	0	1	0	0	0	15588	884	31	4	553	4	SYT13	11	45274079	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	9810874	45274079	89732437	828	166788											
CHST1	8534	broad.mit.edu	37	chr11	45671248	45671248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcccgggtcacgagaagGggcggaagtcccgctcctcc	14	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45671248	T	T	45671248	3	4	214	1	0	0	0	0	1	0	0	0	3428	1232	43	2	13	2	CHST1	11	45671248	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	397169	45671248	89335268	829	166789											
DGKZ	8525	broad.mit.edu	37	chr11	46397831	46397831	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tactccaagttcccttccctCcctggcccccactctatccc	3	22	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46397831	T	T	46397831	1	4	214	0	1	0	0	0	0	0	0	0	4514	870	30	4		4	DGKZ	11	46397831	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	726583	46397831	88608685	830	166790											
CELF1	10658	broad.mit.edu	37	chr11	47493789	47493789	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggagcacgctcagtagGgcttgctgtcattcttcgaa	14	9	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47493789	A	A	47493789	3	1	214	1	0	0	0	0	1	0	0	0	3245	1232	43	4	10	4	CELF1	11	47493789	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1095958	47493789	87512727	831	166791											
TRIM48	79097	broad.mit.edu	37	chr11	55033063	55033063	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactggtgcttcaatttatGgctcttttgcaggagaagct	10	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55033063	T	T	55033063	1	4	214	0	1	0	0	0	0	0	0	0	16648	1363	47	2		2	TRIM48	11	55033063	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	7539274	55033063	79973453	832	166792											
OR4P4	81300	broad.mit.edu	37	chr11	55405905	55405905	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aataagaacattgaagtcctCtgctttgtattatttttgtt	6	5	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55405905	T	T	55405905	2	4	214	1	0	0	0	0	0	0	0	1	11174	900	32	4		4	OR4P4	11	55405905	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	372842	55405905	79600611	833	166793											
OR5D14	219436	broad.mit.edu	37	chr11	55563206	55563206	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agattaaccccaaatttcacActcctatgtactttttcctt	2	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563206	T	T	55563206	3	4	214	1	0	0	0	0	1	0	0	0	11249	159	6	5	177	5	OR5D14	11	55563206	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	157301	55563206	79443310	834	166794											
OR5L2	26338	broad.mit.edu	37	chr11	55594977	55594977	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggacaaagccatctccttcCtagggtgcatggtgcaattc	10	11	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55594977	G	G	55594977	3	3	214	1	0	0	0	0	1	0	0	0	11265	680	24	4	285	4	OR5L2	11	55594977	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	31771	55594977	79411539	835	166795											
SPRYD5	84767	broad.mit.edu	37	chr11	55652826	55652826	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaagaagaaaatatagctAtcacatatcaccacatgttc	5	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55652826	T	T	55652826	1	4	214	0	1	0	0	0	0	0	0	0	15229	464	16	5		5	SPRYD5	11	55652826	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	57849	55652826	79353690	836	166796											
SPRYD5	84767	broad.mit.edu	37	chr11	55653297	55653297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacactgtcccattgagtgGgctgctgaggaacgccgggt	14	10	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55653297	T	T	55653297	3	4	214	1	0	0	0	0	1	0	0	0	15229	1241	43	2	395	2	SPRYD5	11	55653297	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	471	55653297	79353219	837	166797											
OR5I1	10798	broad.mit.edu	37	chr11	55703124	55703124	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aggagagtcccttggtagatCgtcactgaagtcaggtgaga	14	7	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55703124	A	A	55703124	2	1	214	1	0	0	0	0	0	0	0	1	11258	871	31	3		3	OR5I1	11	55703124	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	49827	55703124	79303392	838	166798											
OR8I2	120586	broad.mit.edu	37	chr11	55860792	55860792	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttgatgtaaatggctggCaacaatttcactgaggttac	11	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55860792	A	A	55860792	2	1	214	1	0	0	0	0	0	0	0	1	11334	697	25	3		3	OR8I2	11	55860792	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	157668	55860792	79145724	839	166799											
OR8H3	390152	broad.mit.edu	37	chr11	55890477	55890477	+	Frame_Shift_Del	DEL	C	-	-													tggttccaccctgatggtgtCccttatcacaatatctgcat							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55890477	-	-	55890477	7	5	214	1	0	1	0	1	0	0	0	0	11333	855	30	0	631	0	OR8H3	11	55890477	Frame_Shift_Del	DEL	C	TCGA-75-5126-01A-01D-1753-08	29685	55890477	79116039	840	166800											
OR5M8	219484	broad.mit.edu	37	chr11	56258197	56258197	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcagggaaaatgtaaaggTaggaaatacatatgatgaag	12	2	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56258197	C	C	56258197	3	2	214	1	0	0	0	0	1	0	0	0	11270	1638	57	5	289	5	OR5M8	11	56258197	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	367720	56258197	78748319	841	166801											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57076892	57076892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggctaaatgctgcctctCgctgggggccaacactgagg	14	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57076892	T	T	57076892	3	4	214	1	0	0	0	0	1	0	0	0	16443	884	31	4	1920	4	TNKS1BP1	11	57076892	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	818695	57076892	77929624	842	166802											
OR9Q1	219956	broad.mit.edu	37	chr11	57947084	57947084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatggatcaccagctccaCgctccaatgtatttccttct	5	15	3	0	rs141876179	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57947084	A	A	57947084	3	1	214	1	0	0	0	0	1	0	0	0	11349	535	19	3	170	3	OR9Q1	11	57947084	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	870192	57947084	77059432	843	166803											
OR1S2	219958	broad.mit.edu	37	chr11	57970865	57970865	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacagtggttccgtagaaCagtaatgcaattgtcaggtg	11	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57970865	A	A	57970865	2	1	214	1	0	0	0	0	0	0	0	1	11067	465	17	3		3	OR1S2	11	57970865	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	23781	57970865	77035651	844	166804											
OR10Q1	219960	broad.mit.edu	37	chr11	57995755	57995755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggacagcctggtgcacgCggatgtcagcgcaggccagg	17	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57995755	A	A	57995755	3	1	214	1	0	0	0	0	1	0	0	0	11010	768	27	3	370	3	OR10Q1	11	57995755	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	24890	57995755	77010761	845	166805											
OSBP	5007	broad.mit.edu	37	chr11	59345542	59345542	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccacataattaagtgagaGggcaggcagaaatgccttca	10	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59345542	A	A	59345542	1	1	214	0	1	0	0	0	0	0	0	0	11367	1015	35	4		4	OSBP	11	59345542	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1349787	59345542	75660974	846	166806											
MS4A2	2206	broad.mit.edu	37	chr11	59857958	59857958	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atatttgtgagtatatatctAtaattgtttctgaaataaca	5	3	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59857958	G	G	59857958	1	3	214	0	1	0	0	0	0	0	0	0	9954	464	16	5		5	MS4A2	11	59857958	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	512416	59857958	75148558	847	166807											
MS4A6A	64231	broad.mit.edu	37	chr11	59942819	59942819	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaagaaggaataacaagaAatcaaggcttttgaatacct	7	6	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59942819	T	T	59942819	1	4	214	0	1	0	0	0	0	0	0	0	9958	29	1	5		5	MS4A6A	11	59942819	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	84861	59942819	75063697	848	166808											
MS4A1	931	broad.mit.edu	37	chr11	60235735	60235735	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttttagaacatagttctcCtgtcagcagaagaaaaaaaa	7	6	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60235735	G	G	60235735	3	3	214	1	0	0	0	0	1	0	0	0	9948	680	24	4	710	4	MS4A1	11	60235735	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	292916	60235735	74770781	849	166809											
CD5	921	broad.mit.edu	37	chr11	60886359	60886359	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccctccccacaccacccattCctccctcaccagagtgtctc	3	23	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60886359	A	A	60886359	1	1	214	0	1	0	0	0	0	0	0	0	3051	870	30	3		3	CD5	11	60886359	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	650624	60886359	74120157	850	166810											
VWCE	220001	broad.mit.edu	37	chr11	61036304	61036304	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccttggggttgttaggAcgacatgagatgaaggctgt	15	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61036304	G	G	61036304	1	3	214	0	1	0	0	0	0	0	0	0	17372	290	10	5		5	VWCE	11	61036304	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	149945	61036304	73970212	851	166811											
SCGB1A1	7356	broad.mit.edu	37	chr11	62186609	62186609	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accctggtcacactggctctCtgctgcagctccggtgagtg	12	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62186609	G	G	62186609	2	3	214	1	0	0	0	0	0	0	0	1	14006	900	32	4		4	SCGB1A1	11	62186609	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1150305	62186609	72819907	852	166812											
HRASLS5	117245	broad.mit.edu	37	chr11	63230947	63230947	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttgcttgtgtcagtaactCttcctctagctggagttttc	8	9	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63230947	A	A	63230947	1	1	214	0	1	0	0	0	0	0	0	0	7418	928	32	3		3	HRASLS5	11	63230947	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1044338	63230947	71775569	853	166813											
RTN3	10313	broad.mit.edu	37	chr11	63487182	63487182	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatcactaaatcaacagGtgattgggcagaagcatctc	8	11	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63487182	T	T	63487182	3	4	214	1	0	0	0	0	1	0	0	0	13838	1261	44	3	1218	3	RTN3	11	63487182	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	256235	63487182	71519334	854	166814											
NAALADL1	10004	broad.mit.edu	37	chr11	64821818	64821818	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctggggccaaagttccgTtgaggttactggggaggagg	19	6	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64821818	A	A	64821818	3	1	214	1	0	0	0	0	1	0	0	0	10223	1725	60	5	1378	5	NAALADL1	11	64821818	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	1334636	64821818	70184698	855	166815											
TSGA10IP	254187	broad.mit.edu	37	chr11	65721100	65721100	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaggccgagctgcggcGggcccggacacagcatgtac	16	14	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65721100	T	T	65721100	3	4	214	1	0	0	0	0	1	0	0	0	16743	1116	39	1	1232	1	TSGA10IP	11	65721100	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	899282	65721100	69285416	856	166816											
CTSF	8722	broad.mit.edu	37	chr11	66333336	66333336	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagagcagggtcccctggttGagaaaccactggccctccac	12	14	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66333336	A	A	66333336	2	1	214	1	0	0	0	0	0	0	0	1	4068	1277	45	4		4	CTSF	11	66333336	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	612236	66333336	68673180	857	166817											
TBX10	347853	broad.mit.edu	37	chr11	67400631	67400631	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cggagtacagcggactccctGaggctggagtccttccctcc	12	15	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67400631	C	C	67400631	1	2	214	0	1	0	0	0	0	0	0	0	15773	1305	45	4		4	TBX10	11	67400631	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1067295	67400631	67605885	858	166818											
TPCN2	219931	broad.mit.edu	37	chr11	68846407	68846407	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacctgttggagatgctgctCaaggtctttgccctgggcct	12	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68846407	T	T	68846407	2	4	214	1	0	0	0	0	0	0	0	1	16520	813	29	4		4	TPCN2	11	68846407	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1445776	68846407	66160109	859	166819											
KRTAP5-9	3846	broad.mit.edu	37	chr11	71259944	71259944	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgtggctgctcccagtgcAgttgctgcaagccctgctgt	12	13	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71259944	T	T	71259944	3	4	214	1	0	0	0	0	1	0	0	0	8640	188	7	5	243	5	KRTAP5-9	11	71259944	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	2413537	71259944	63746572	860	166820											
FAM168A	23201	broad.mit.edu	37	chr11	73118706	73118706	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tacctgagcatccagagagaGaagagtaacctgacgaggct	12	9	0	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73118706	A	A	73118706	1	1	214	0	1	0	0	0	0	0	0	0	5530	957	33	4		4	FAM168A	11	73118706	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1858762	73118706	61887810	861	166821											
FAM168A	23201	broad.mit.edu	37	chr11	73118753	73118753	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacacaggaatgaagaggatGaagctacagtctttcacatg	11	7	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73118753	T	T	73118753	1	4	214	0	1	0	0	0	0	0	0	0	5530	1305	45	3		3	FAM168A	11	73118753	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	47	73118753	61887763	862	166822											
FAM168A	23201	broad.mit.edu	37	chr11	73120512	73120512	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggaaagggatggacactGatgcagatgctgccctcacc	13	10	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73120512	A	A	73120512	1	1	214	0	1	0	0	0	0	0	0	0	5530	1305	45	4		4	FAM168A	11	73120512	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1759	73120512	61886004	863	166823											
UVRAG	7405	broad.mit.edu	37	chr11	75727892	75727892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcattgctgttgcccttgGttatactgcacatctggtct	9	10	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75727892	T	T	75727892	3	4	214	1	0	0	0	0	1	0	0	0	17235	1261	44	3	1140	3	UVRAG	11	75727892	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2607380	75727892	59278624	864	166824											
UVRAG	7405	broad.mit.edu	37	chr11	75852456	75852456	+	Nonstop_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcgcaggagttccgataagtGaagtgagcaggtcaacagta	14	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75852456	T	T	75852456	4	4	214	1	0	0	0	0	0	0	0	0	17235	1285	45	3	2157	3	UVRAG	11	75852456	Nonstop_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	124564	75852456	59154060	865	166825											
NAALAD2	10003	broad.mit.edu	37	chr11	89891256	89891256	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttatgcaaaaaatccctgTatatctcttgctcagatttt	6	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89891256	A	A	89891256	1	1	214	0	1	0	0	0	0	0	0	0	10222	1653	57	5		5	NAALAD2	11	89891256	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	14038800	89891256	45115260	866	166826											
NAALAD2	10003	broad.mit.edu	37	chr11	89896521	89896521	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caccgggactcctgggtattTggagctattgacccaaccag	11	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	89896521	C	C	89896521	2	2	214	1	0	0	0	0	0	0	0	1	10222	1809	63	5		5	NAALAD2	11	89896521	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	5265	89896521	45109995	867	166827											
FAT3	120114	broad.mit.edu	37	chr11	92616425	92616425	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatgaccacgtttcaccCtgagtcgccccgcatcctga	9	15	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92616425	A	A	92616425	3	1	214	1	0	0	0	0	1	0	0	0	5748	681	24	2	12893	2	FAT3	11	92616425	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2719904	92616425	42390091	868	166828											
DYNC2H1	79659	broad.mit.edu	37	chr11	103057207	103057207	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaacagccctttattctggtAggaccagaaggatgtggcaa	11	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103057207	T	T	103057207	2	4	214	1	0	0	0	0	0	0	0	1	4886	407	15	5		5	DYNC2H1	11	103057207	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	10440782	103057207	31949309	869	166829											
PDGFD	80310	broad.mit.edu	37	chr11	103797775	103797775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacattggccaacttcagCtcttctcttatattgaccga	5	13	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103797775	A	A	103797775	3	1	214	1	0	0	0	0	1	0	0	0	11754	796	28	3	268	3	PDGFD	11	103797775	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	740568	103797775	31208741	870	166830											
CASP1	834	broad.mit.edu	37	chr11	104934646	104934646	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatccaccagagccctacCttgcggaaaatttcctccac	6	16	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104934646	T	T	104934646	1	4	214	0	1	0	0	0	0	0	0	0	2694	696	24	4		4	CASP1	11	104934646	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1136871	104934646	30071870	871	166831											
CRYAB	1410	broad.mit.edu	37	chr11	111779603	111779603	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgaggaccccatcagatGacagggatgaagtaatggtg	14	7	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111779603	A	A	111779603	3	1	214	1	0	0	0	0	1	0	0	0	3938	1294	45	4	118	4	CRYAB	11	111779603	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	6844957	111779603	23226913	872	166832											
HTR3B	9177	broad.mit.edu	37	chr11	113775684	113775684	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtaatggctcccctgtGggcctgcatcctggtggctg	14	11	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113775684	A	A	113775684	4	1	214	1	0	0	0	0	0	1	0	0	7515	1357	47	4	31	4	HTR3B	11	113775684	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1996081	113775684	21230832	873	166833											
RBM7	10179	broad.mit.edu	37	chr11	114271501	114271501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaccaggtaagcggctgGgttcggccctttgcctttcg	12	13	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114271501	T	T	114271501	1	4	214	0	1	0	0	0	0	0	0	0	13253	1247	43	2		2	RBM7	11	114271501	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	495817	114271501	20735015	874	166834											
FAM55D	54827	broad.mit.edu	37	chr11	114455051	114455051	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accagaacactaatgagtacCtggagaagattaaacagtgg	10	7	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114455051	G	G	114455051	1	3	214	0	1	0	0	0	0	0	0	0	5638	696	24	4		4	FAM55D	11	114455051	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	183550	114455051	20551465	875	166835											
DSCAML1	57453	broad.mit.edu	37	chr11	117302210	117302210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgaatgatggggaactgGggggaggtgttcaggatgcc	20	4	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117302210	T	T	117302210	1	4	214	0	1	0	0	0	0	0	0	0	4809	1247	43	2		2	DSCAML1	11	117302210	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2847159	117302210	17704306	876	166836											
CXCR5	643	broad.mit.edu	37	chr11	118764836	118764836	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaaagtcagccaaggccatCacaacaactccctgccacgt	6	17	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118764836	T	T	118764836	3	4	214	1	0	0	0	0	1	0	0	0	4127	826	29	4	589	4	CXCR5	11	118764836	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1462626	118764836	16241680	877	166837											
CXCR5	643	broad.mit.edu	37	chr11	118765377	118765377	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcaccacgttctaggtccCagtgtccccttttattgctg	7	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118765377	T	T	118765377	1	4	214	0	1	0	0	0	0	0	0	0	4127	609	21	4		4	CXCR5	11	118765377	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	541	118765377	16241139	878	166838											
ABCG4	64137	broad.mit.edu	37	chr11	119029536	119029536	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcctaagcagcctgtgtcctCagtccccttagagatggcgg	12	13	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119029536	T	T	119029536	1	4	214	0	1	0	0	0	0	0	0	0	70	841	29	4		4	ABCG4	11	119029536	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	264159	119029536	15976980	879	166839											
CBL	867	broad.mit.edu	37	chr11	119149039	119149039	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagcgacttttttcagctAtgtaataaccttggaaaatt	6	7	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119149039	G	G	119149039	1	3	214	0	1	0	0	0	0	0	0	0	2726	464	16	5		5	CBL	11	119149039	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	119503	119149039	15857477	880	166840											
MCAM	4162	broad.mit.edu	37	chr11	119183321	119183321	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccttccttcagcattccCacgggctccacttccagcca	5	20	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119183321	A	A	119183321	2	1	214	1	0	0	0	0	0	0	0	1	9461	581	21	2		2	MCAM	11	119183321	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	34282	119183321	15823195	881	166841											
RNF26	79102	broad.mit.edu	37	chr11	119206115	119206115	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagctgctgctctggcctaGagagcctaaagctcctgggg	13	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119206115	A	A	119206115	3	1	214	1	0	0	0	0	1	0	0	0	13597	943	33	4	285	4	RNF26	11	119206115	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	22794	119206115	15800401	882	166842											
MFRP	83552	broad.mit.edu	37	chr11	119212634	119212634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccagatgttagggaagGctgtggtgttgtagctcaga	14	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119212634	T	T	119212634	3	4	214	1	0	0	0	0	1	0	0	0	9619	1203	42	3	299	3	MFRP	11	119212634	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	6519	119212634	15793882	883	166843											
PVRL1	5818	broad.mit.edu	37	chr11	119509436	119509436	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcctctgctgcctcaggCccacctggatatcctcaggc	9	16	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119509436	A	A	119509436	1	1	214	0	1	0	0	0	0	0	0	0	12947	754	26	3		3	PVRL1	11	119509436	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	296802	119509436	15497080	884	166844											
GRIK4	2900	broad.mit.edu	37	chr11	120707556	120707556	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tacatcttcactaatctggtAagatgttctcacagctcacc	5	12	5	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120707556	T	T	120707556	1	4	214	0	1	0	0	0	0	0	0	0	6842	377	13	5		5	GRIK4	11	120707556	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	1198120	120707556	14298960	885	166845											
TECTA	7007	broad.mit.edu	37	chr11	120998690	120998690	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagttcttctgggccacGgccaactgcactgtgcaatg	14	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120998690	T	T	120998690	2	4	214	1	0	0	0	0	0	0	0	1	15869	1103	39	1		1	TECTA	11	120998690	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	291134	120998690	14007826	886	166846											
OR10G8	219869	broad.mit.edu	37	chr11	123900895	123900895	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctgaaactggcctgtgCagacacctcagccatagaga	9	13	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123900895	A	A	123900895	3	1	214	1	0	0	0	0	1	0	0	0	10997	710	25	3	568	3	OR10G8	11	123900895	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2902205	123900895	11105621	887	166847											
OR8D2	283160	broad.mit.edu	37	chr11	124189498	124189498	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taactcctccaataatgaacAgcagaatctcattgatgtgg	7	9	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124189498	T	T	124189498	3	4	214	1	0	0	0	0	1	0	0	0	11326	188	7	5	342	5	OR8D2	11	124189498	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	288603	124189498	10817018	888	166848											
ROBO3	64221	broad.mit.edu	37	chr11	124747092	124747092	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccggcaggtaagccatctCtgccccagtggggttcagac	12	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124747092	T	T	124747092	1	4	214	0	1	0	0	0	0	0	0	0	13626	928	32	4		4	ROBO3	11	124747092	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	557594	124747092	10259424	889	166849											
NFRKB	4798	broad.mit.edu	37	chr11	129746672	129746672	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcagcagggagtgctccCgagccttgttgagcgaggtc	16	11	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129746672	A	A	129746672	3	1	214	1	0	0	0	0	1	0	0	0	10479	652	23	1	2252	1	NFRKB	11	129746672	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4999580	129746672	5259844	890	166850											
APLP2	334	broad.mit.edu	37	chr11	130000093	130000093	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagtagaaattgctgccgtGagggcatttccagtggggaa	15	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130000093	A	A	130000093	1	1	214	0	1	0	0	0	0	0	0	0	781	1305	45	4		4	APLP2	11	130000093	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	253421	130000093	5006423	891	166851											
NTM	50863	broad.mit.edu	37	chr11	132016339	132016339	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtggatgtgtatgacgagGgcccttacacctgctcggtg	14	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132016339	T	T	132016339	3	4	214	1	0	0	0	0	1	0	0	0	10794	1232	43	2	423	2	NTM	11	132016339	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2016246	132016339	2990177	892	166852											
NCAPD3	23310	broad.mit.edu	37	chr11	134078733	134078733	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcgattcaactagtaacCaaattaggttctcatctcct	4	12	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134078733	T	T	134078733	1	4	214	0	1	0	0	0	0	0	0	0	10301	609	21	4		4	NCAPD3	11	134078733	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2062394	134078733	927783	893	166853											
GLB1L2	89944	broad.mit.edu	37	chr11	134244036	134244036	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttctctgtgttctgtcctTaggttcggcctggacaaatg	10	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134244036	A	A	134244036	1	1	214	0	1	0	0	0	0	0	0	0	6493	1769	61	5		5	GLB1L2	11	134244036	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	165303	134244036	762480	894	166854											
IQSEC3	440073	broad.mit.edu	37	chr12	272696	272696	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accgccgcctggtgtgctgcAgccggctcttcgaggtgacg	15	14	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	272696	G	G	272696	3	3	214	1	0	0	0	0	1	0	0	0	7889	188	7	5	2654	5	IQSEC3	12	272696	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08		272696	133579199	895	166855											
SLC6A12	6539	broad.mit.edu	37	chr12	305962	305962	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccagccctaggaatatgaGcatgataaagaacaggcagg	12	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	305962	A	A	305962	3	1	214	1	0	0	0	0	1	0	0	0	14789	971	34	4	706	4	SLC6A12	12	305962	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	33266	305962	133545933	896	166856											
CACNA2D4	93589	broad.mit.edu	37	chr12	1983718	1983718	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcactactccaaacccaAttaatgaagatgccttccta	4	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1983718	T	T	1983718	1	4	214	0	1	0	0	0	0	0	0	0	2577	116	4	5		5	CACNA2D4	12	1983718	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	1677756	1983718	131868177	897	166857											
KCNA5	3741	broad.mit.edu	37	chr12	5155205	5155205	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtagggaatgggaggcttGctgaacatggatatctacat	14	5	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5155205	T	T	5155205	1	4	214	0	1	0	0	0	0	0	0	0	8076	1334	46	3		3	KCNA5	12	5155205	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	3171487	5155205	128696690	898	166858											
ANO2	57101	broad.mit.edu	37	chr12	5724394	5724394	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagatgggggagtaggcaTtgacaaacttgagcaagaaa	14	4	0	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5724394	C	C	5724394	3	2	214	1	0	0	0	0	1	0	0	0	697	1493	52	5	1146	5	ANO2	12	5724394	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	569189	5724394	128127501	899	166859											
SCNN1A	6337	broad.mit.edu	37	chr12	6483728	6483728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggttgtgctgggagcacacCaggcggatggcgccgtggat	18	10	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6483728	A	A	6483728	2	1	214	1	0	0	0	0	0	0	0	1	14040	581	21	2		2	SCNN1A	12	6483728	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	759334	6483728	127368167	900	166860											
MRPL51	51258	broad.mit.edu	37	chr12	6602071	6602071	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actccgaacatggcccttttCtcgttccaacgatcaaccac	5	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6602071	G	G	6602071	3	3	214	1	0	0	0	0	1	0	0	0	9909	912	32	4	247	4	MRPL51	12	6602071	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	118343	6602071	127249824	901	166861											
ZNF384	171017	broad.mit.edu	37	chr12	6777124	6777124	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctgctgctgtgatgcctggGaggcctgggcctgggcctgg	19	11	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6777124	T	T	6777124	3	4	214	1	0	0	0	0	1	0	0	0	18001	1174	41	3	247	3	ZNF384	12	6777124	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	175053	6777124	127074771	902	166862											
CLSTN3	9746	broad.mit.edu	37	chr12	7295953	7295953	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcaccaagcagagccagacAgtgtcacagctccttggcct	9	14	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7295953	T	T	7295953	1	4	214	0	1	0	0	0	0	0	0	0	3595	203	7	5		5	CLSTN3	12	7295953	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	518829	7295953	126555942	903	166863											
CD163L1	283316	broad.mit.edu	37	chr12	7548878	7548878	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgggcagtccagctggctAcacaccacagctgcagcttt	11	13	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7548878	T	T	7548878	4	4	214	1	0	0	0	0	0	1	0	0	2998	389	14	5	2546	5	CD163L1	12	7548878	Nonsense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	252925	7548878	126303017	904	166864											
DPPA3	359787	broad.mit.edu	37	chr12	7867686	7867686	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accctgaggaatttcccacaCagcgccctgttcccctgctt	7	17	0	1	rs141903893	by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7867686	G	G	7867686	1	3	214	0	1	0	0	0	0	0	0	0	4775	493	17	4		4	DPPA3	12	7867686	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	318808	7867686	125984209	905	166865											
SLC2A3	6515	broad.mit.edu	37	chr12	8075436	8075437	+	Frame_Shift_Ins	INS	-	T	T													agcagcggaggggaagagcaINSatccgactaggaagttggag							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8075437	T	T	8075436	7	5	214	1	0	1	1	0	0	0	0	0	14659	131	5	0	245	0	SLC2A3	12	8075436	Frame_Shift_Ins	INS	-	TCGA-75-5126-01A-01D-1753-08	207750	8075436	125776459	906	166866											
CLEC4D	338339	broad.mit.edu	37	chr12	8672847	8672847	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattattcagtttctggataGacggctttcctatttccttg	7	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8672847	A	A	8672847	3	1	214	1	0	0	0	0	1	0	0	0	3546	942	33	4	428	4	CLEC4D	12	8672847	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	597411	8672847	125179048	907	166867											
CLEC1B	51266	broad.mit.edu	37	chr12	10145867	10145867	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaattcatatttccttttcCatcttccaaaaactcaaacc	0	13	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10145867	T	T	10145867	3	4	214	1	0	0	0	0	1	0	0	0	3538	603	21	4	128	4	CLEC1B	12	10145867	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1473020	10145867	123706028	908	166868											
CLEC1B	51266	broad.mit.edu	37	chr12	10151728	10151728	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagtactgcaactgagctcaGagttcaatgactttgcaaaa	9	8	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10151728	C	C	10151728	1	2	214	0	1	0	0	0	0	0	0	0	3538	957	33	4		4	CLEC1B	12	10151728	5'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	5861	10151728	123700167	909	166869											
GPR19	2842	broad.mit.edu	37	chr12	12814875	12814875	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggacaccttgaagctcagagGatagacgatggtgtagaacc	13	8	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12814875	A	A	12814875	3	1	214	1	0	0	0	0	1	0	0	0	6744	1174	41	4	743	4	GPR19	12	12814875	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2663147	12814875	121037020	910	166870			2	133		5	4	286	N	G	3.757727e-07
GPR19	2842	broad.mit.edu	37	chr12	12815044	12815044	+	Silent	SNP	G	A	A													ggcgtgctggcaacgctgatGagaaggtcagcacatgccat					rs143793074		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12815044	A	A	12815044	2	1	214	1	0	0	0	0	0	0	0	1	6744	1277	45	4		4	GPR19	12	12815044	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	169	12815044	121036851	911	166871	700	2	2	133		5	4	286	N	G	3.757727e-07
GPR19	2842	broad.mit.edu	37	chr12	12815046	12815046	+	Missense_Mutation	SNP	G	A	A													cgtgctggcaacgctgatgaGaaggtcagcacatgccatgg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12815046	A	A	12815046	3	1	214	1	0	0	0	0	1	0	0	0	6744	942	33	4	914	4	GPR19	12	12815046	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2	12815046	121036849	912	166872	700	2	2	133		5	4	286	N	G	3.757727e-07
GPR19	2842	broad.mit.edu	37	chr12	12815116	12815116	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcctcctactcctatggatGaccaaacaaaccagggaatt	7	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12815116	A	A	12815116	2	1	214	1	0	0	0	0	0	0	0	1	6744	1277	45	4		4	GPR19	12	12815116	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	70	12815116	121036779	913	166873			2	133		5	4	286	N	G	3.757727e-07
GPR19	2842	broad.mit.edu	37	chr12	12815160	12815160	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagatagaaaacaaccacaGaatcccaaagaagatgctgg	9	8	0	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12815160	A	A	12815160	2	1	214	1	0	0	0	0	0	0	0	1	6744	933	33	4		4	GPR19	12	12815160	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	44	12815160	121036735	914	166874			2	133		5	4	286	N	G	3.757727e-07
SLCO1A2	6579	broad.mit.edu	37	chr12	21422677	21422677	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagcttgatcctcttagtgcTgccggcaatccgaggtagat	11	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21422677	A	A	21422677	2	1	214	1	0	0	0	0	0	0	0	1	14836	1567	55	5		5	SLCO1A2	12	21422677	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	8607517	21422677	112429218	915	166875											
KCNJ8	3764	broad.mit.edu	37	chr12	21919187	21919187	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctcgattgggttatcaacagGaatgtccagttggtgaatag	12	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21919187	C	C	21919187	3	2	214	1	0	0	0	0	1	0	0	0	8126	1174	41	4	533	4	KCNJ8	12	21919187	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	496510	21919187	111932708	916	166876											
SOX5	6660	broad.mit.edu	37	chr12	23893750	23893750	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacagtgacctataagtagCaggcaaagtaatgtctgagg	13	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23893750	T	T	23893750	1	4	214	0	1	0	0	0	0	0	0	0	15068	725	25	4		4	SOX5	12	23893750	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1974563	23893750	109958145	917	166877											
KRAS	3845	broad.mit.edu	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398285	A	A	25398285	3	1	214	1	0	0	0	0	1	0	0	0	8509	594	21	2	672	2	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1504535	25398285	108453610	918	166878											
FAR2	55711	broad.mit.edu	37	chr12	29463877	29463877	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttcacttattgcactagTataaccagtttgatgataca	6	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29463877	A	A	29463877	1	1	214	0	1	0	0	0	0	0	0	0	5732	1653	57	5		5	FAR2	12	29463877	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	4065592	29463877	104388018	919	166879											
OVCH1	341350	broad.mit.edu	37	chr12	29639183	29639183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaattagaaccacacatacCctttcctctctggcttccat	3	15	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29639183	A	A	29639183	3	1	214	1	0	0	0	0	1	0	0	0	11417	623	22	2	2497	2	OVCH1	12	29639183	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	175306	29639183	104212712	920	166880											
TMTC1	83857	broad.mit.edu	37	chr12	29724995	29724995	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caagtgaaataaacaacggtCtttaaagcaccaaggccaac	7	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29724995	A	A	29724995	1	1	214	0	1	0	0	0	0	0	0	0	16383	928	32	3		3	TMTC1	12	29724995	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	85812	29724995	104126900	921	166881											
TMTC1	83857	broad.mit.edu	37	chr12	29908738	29908738	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccagcatcgcacaggtcCccagaaacaaactgagcagc	8	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29908738	A	A	29908738	3	1	214	1	0	0	0	0	1	0	0	0	16383	623	22	2	2073	2	TMTC1	12	29908738	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	183743	29908738	103943157	922	166882											
DENND5B	160518	broad.mit.edu	37	chr12	31632962	31632962	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agactacttgccaatgagtcCatactgcaggaagatgaagc	10	9	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31632962	A	A	31632962	3	1	214	1	0	0	0	0	1	0	0	0	4477	594	21	2	3435	2	DENND5B	12	31632962	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1724224	31632962	102218933	923	166883											
FGD4	121512	broad.mit.edu	37	chr12	32751515	32751515	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaaccgacttgacctcttaGatcaggtaagattttctttc	6	10	4	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32751515	C	C	32751515	3	2	214	1	0	0	0	0	1	0	0	0	5892	942	33	4	695	4	FGD4	12	32751515	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1118553	32751515	101100380	924	166884											
CPNE8	144402	broad.mit.edu	37	chr12	39064600	39064600	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatctccatccaattcgacCattgctttaagagaaaatat	4	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39064600	G	G	39064600	3	3	214	1	0	0	0	0	1	0	0	0	3850	594	21	4	265	4	CPNE8	12	39064600	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6313085	39064600	94787295	925	166885											
LRRK2	120892	broad.mit.edu	37	chr12	40697715	40697715	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcatgtattttggaaatactCatttggtttatgtcttttct	6	5	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40697715	G	G	40697715	1	3	214	0	1	0	0	0	0	0	0	0	9120	841	29	4		4	LRRK2	12	40697715	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1633115	40697715	93154180	926	166886											
CNTN1	1272	broad.mit.edu	37	chr12	41419236	41419236	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatttcctacctagctacctGagcacatttttcaatatcct	3	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41419236	A	A	41419236	1	1	214	0	1	0	0	0	0	0	0	0	3672	1305	45	4		4	CNTN1	12	41419236	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	721521	41419236	92432659	927	166887											
PDZRN4	29951	broad.mit.edu	37	chr12	41967324	41967324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgaatcctgaaggaacgtGccttaaagatcaaggaagag	11	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41967324	T	T	41967324	3	4	214	1	0	0	0	0	1	0	0	0	11804	1319	46	3	2854	3	PDZRN4	12	41967324	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	548088	41967324	91884571	928	166888											
ADAMTS20	80070	broad.mit.edu	37	chr12	43777548	43777548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacactagaaatgcaataacCaaatgaataacacattctta	3	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43777548	A	A	43777548	1	1	214	0	1	0	0	0	0	0	0	0	266	609	21	2		2	ADAMTS20	12	43777548	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1810224	43777548	90074347	929	166889											
ADAMTS20	80070	broad.mit.edu	37	chr12	43837707	43837707	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaatataattttacataTgttaaatttcacaaaaagca	3	6	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43837707	C	C	43837707	1	2	214	0	1	0	0	0	0	0	0	0	266	1479	51	5		5	ADAMTS20	12	43837707	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	60159	43837707	90014188	930	166890											
HDAC7	51564	broad.mit.edu	37	chr12	48190850	48190850	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctggggggcgcactctccTttcggagcagtggattcttc	15	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48190850	C	C	48190850	3	2	214	1	0	0	0	0	1	0	0	0	7079	1609	56	5	2402	5	HDAC7	12	48190850	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	4353143	48190850	85661045	931	166891											
OR8S1	341568	broad.mit.edu	37	chr12	48919816	48919816	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcccactactttatggacaGatcatgggtaaacagctgta	9	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48919816	T	T	48919816	3	4	214	1	0	0	0	0	1	0	0	0	11340	933	33	3	404	3	OR8S1	12	48919816	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	728966	48919816	84932079	932	166892											
MLL2	8085	broad.mit.edu	37	chr12	49420271	49420271	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agcgatttgcttcacctcgtCccgctcaatgtagacccgcc	8	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49420271	G	G	49420271	3	3	214	1	0	0	0	0	1	0	0	0	9714	855	30	4	1163	4	MLL2	12	49420271	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	500455	49420271	84431624	933	166893											
SMARCD1	6602	broad.mit.edu	37	chr12	50492589	50492589	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggctgtgtgccgatacttCtactccaaggtaagtacatg	11	9	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50492589	G	G	50492589	3	3	214	1	0	0	0	0	1	0	0	0	14891	912	32	4	1531	4	SMARCD1	12	50492589	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1072318	50492589	83359306	934	166894											
DIP2B	57609	broad.mit.edu	37	chr12	51138374	51138374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcattgaaatttcagtgccGtgttcacatggaccaacttg	9	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51138374	T	T	51138374	3	4	214	1	0	0	0	0	1	0	0	0	4568	1145	40	3	4633	3	DIP2B	12	51138374	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	645785	51138374	82713521	935	166895											
ANKRD33	341405	broad.mit.edu	37	chr12	52284753	52284753	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcacccgaagcaagtcCgtgccagagctgttaggtac	13	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52284753	A	A	52284753	2	1	214	1	0	0	0	0	0	0	0	1	661	639	23	1		1	ANKRD33	12	52284753	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1146379	52284753	81567142	936	166896											
SPRYD3	84926	broad.mit.edu	37	chr12	53468351	53468351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtccctgggcaagccccagCcagcagactcttcctaatca	9	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53468351	A	A	53468351	1	1	214	0	1	0	0	0	0	0	0	0	15227	754	26	3		3	SPRYD3	12	53468351	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1183598	53468351	80383544	937	166897											
CBX5	23468	broad.mit.edu	37	chr12	54635431	54635431	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagcacagtgataagcaCattttttatggatgtgttta	11	4	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54635431	A	A	54635431	1	1	214	0	1	0	0	0	0	0	0	0	2747	493	17	3		3	CBX5	12	54635431	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1167080	54635431	79216464	938	166898											
NCKAP1L	3071	broad.mit.edu	37	chr12	54921838	54921838	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagaggcaaagtggaattcCagtactgccagttgtttttg	11	6	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54921838	T	T	54921838	1	4	214	0	1	0	0	0	0	0	0	0	10317	609	21	4		4	NCKAP1L	12	54921838	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	286407	54921838	78930057	939	166899											
LACRT	90070	broad.mit.edu	37	chr12	55024687	55024687	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcttctcatgcccatgGttttaatagactgaatttct	6	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55024687	A	A	55024687	3	1	214	1	0	0	0	0	1	0	0	0	8668	1261	44	4	14	4	LACRT	12	55024687	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	102849	55024687	78827208	940	166900											
OR6C1	390321	broad.mit.edu	37	chr12	55715183	55715183	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcagcaaaagatagagtgtCcttgagcaagggagtggcaa	13	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55715183	T	T	55715183	3	4	214	1	0	0	0	0	1	0	0	0	11284	855	30	4	802	4	OR6C1	12	55715183	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	690496	55715183	78136712	941	166901											
MMP19	4327	broad.mit.edu	37	chr12	56230705	56230705	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcacctgcaaggttctactGagcagacaggtatttcattc	9	10	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56230705	A	A	56230705	1	1	214	0	1	0	0	0	0	0	0	0	9750	1305	45	4		4	MMP19	12	56230705	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	515522	56230705	77621190	942	166902											
SILV	6490	broad.mit.edu	37	chr12	56355294	56355294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcctgggcttcccctccCtgtatacgtttcccctcctt	6	18	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56355294	A	A	56355294	1	1	214	0	1	0	0	0	0	0	0	0	14435	696	24	2		2	SILV	12	56355294	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	124589	56355294	77496601	943	166903											
RAB5B	5869	broad.mit.edu	37	chr12	56374196	56374196	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttccggggtggggaggcaaGaaagggtcctcagctcaggg	18	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56374196	A	A	56374196	1	1	214	0	1	0	0	0	0	0	0	0	13057	957	33	4		4	RAB5B	12	56374196	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	18902	56374196	77477699	944	166904											
RAB5B	5869	broad.mit.edu	37	chr12	56380979	56380979	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttagatggagtcttgctCtgttacccaggctggagtgc	12	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56380979	G	G	56380979	1	3	214	0	1	0	0	0	0	0	0	0	13057	928	32	4		4	RAB5B	12	56380979	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6783	56380979	77470916	945	166905											
RPL41	6171	broad.mit.edu	37	chr12	56510644	56510644	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgagtagtagcgaggagacGaaggcaagtccgccatacct	14	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56510644	A	A	56510644	1	1	214	0	1	0	0	0	0	0	0	0	13707	1073	37	4		4	RPL41	12	56510644	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	129665	56510644	77341251	946	166906											
SMARCC2	6601	broad.mit.edu	37	chr12	56563372	56563372	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcggtggagaggttgccctCgccaatgtcccgctccacct	12	15	0	1	rs144543721	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56563372	T	T	56563372	3	4	214	1	0	0	0	0	1	0	0	0	14890	893	31	4	1101	4	SMARCC2	12	56563372	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	52728	56563372	77288523	947	166907											
SMARCC2	6601	broad.mit.edu	37	chr12	56567335	56567335	+	Intron	SNP	C	A	A													aggatgctaaacacatggggCtgattcccgtgaccctttgc							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56567335	A	A	56567335	1	1	214	0	1	0	0	0	0	0	0	0	14890	812	28	3		3	SMARCC2	12	56567335	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3963	56567335	77284560	948	166908	701	2									
SMARCC2	6601	broad.mit.edu	37	chr12	56567337	56567337	+	Intron	SNP	G	T	T													gatgctaaacacatggggctGattcccgtgaccctttgcat							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56567337	T	T	56567337	1	4	214	0	1	0	0	0	0	0	0	0	14890	1305	45	3		3	SMARCC2	12	56567337	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2	56567337	77284558	949	166909	701	2									
ATP5B	506	broad.mit.edu	37	chr12	57037165	57037165	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcgtaactaccacgtggaCatcaattagctcaatgctta	8	10	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57037165	T	T	57037165	1	4	214	0	1	0	0	0	0	0	0	0	1152	493	17	4		4	ATP5B	12	57037165	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	469828	57037165	76814730	950	166910											
LRP1	4035	broad.mit.edu	37	chr12	57588394	57588394	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agatgccctctgaattacttCgcctgccctagtgggcgctg	11	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57588394	T	T	57588394	2	4	214	1	0	0	0	0	0	0	0	1	9038	883	31	4		4	LRP1	12	57588394	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	551229	57588394	76263501	951	166911											
LRP1	4035	broad.mit.edu	37	chr12	57590051	57590051	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gactgtgaggacctcaagatCggcttcaaggtatgcccagc	12	11	2	2	rs143084495	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57590051	A	A	57590051	2	1	214	1	0	0	0	0	0	0	0	1	9038	874	31	3		3	LRP1	12	57590051	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1657	57590051	76261844	952	166912											
ARHGAP9	64333	broad.mit.edu	37	chr12	57872492	57872492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctagcctgagccctgcttGggagggcctgagacaactcc	13	13	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57872492	T	T	57872492	3	4	214	1	0	0	0	0	1	0	0	0	891	1348	47	2	1894	2	ARHGAP9	12	57872492	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	282441	57872492	75979403	953	166913											
CYP27B1	1594	broad.mit.edu	37	chr12	58158802	58158802	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgccttaccaaatgcaAacatctggtcccagtctcgg	8	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58158802	C	C	58158802	3	2	214	1	0	0	0	0	1	0	0	0	4192	14	1	5	768	5	CYP27B1	12	58158802	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	286310	58158802	75693093	954	166914											
IRAK3	11213	broad.mit.edu	37	chr12	66610874	66610874	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagttcatctaatttagggAgactatagaccctgggttaa	9	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66610874	G	G	66610874	1	3	214	0	1	0	0	0	0	0	0	0	7894	319	11	5		5	IRAK3	12	66610874	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	8452072	66610874	67241021	955	166915											
LGR5	8549	broad.mit.edu	37	chr12	71973992	71973992	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaataattgggtgaaagaaCatgaacactatatttaatta	7	3	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71973992	T	T	71973992	1	4	214	0	1	0	0	0	0	0	0	0	8829	493	17	4		4	LGR5	12	71973992	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	5363118	71973992	61877903	956	166916											
ZFC3H1	196441	broad.mit.edu	37	chr12	72004836	72004836	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagattcaaccatggcttAcctctctttgtccctttaga	6	12	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72004836	C	C	72004836	5	2	214	1	0	0	0	0	0	0	1	0	17759	405	14	5	210	5	ZFC3H1	12	72004836	Splice_Site	SNP	A	TCGA-75-5126-01A-01D-1753-08	30844	72004836	61847059	957	166917											
ZFC3H1	196441	broad.mit.edu	37	chr12	72008575	72008575	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcccgatcatacccctttaTccccaaatctcattcttatc	1	16	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72008575	A	A	72008575	1	1	214	0	1	0	0	0	0	0	0	0	17759	1450	50	5		5	ZFC3H1	12	72008575	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	3739	72008575	61843320	958	166918											
TBC1D15	64786	broad.mit.edu	37	chr12	72288199	72288199	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtatgcagattgagtgaaGcctgcaaatcatttgtttat	9	5	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72288199	T	T	72288199	1	4	214	0	1	0	0	0	0	0	0	0	15723	986	34	3		3	TBC1D15	12	72288199	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	279624	72288199	61563696	959	166919											
KCNC2	3747	broad.mit.edu	37	chr12	75434879	75434879	+	Nonstop_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtgcaacctggtcacatcAgggcacattcagcagcagaa	10	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75434879	T	T	75434879	4	4	214	1	0	0	0	0	0	0	0	0	8085	203	7	5		5	KCNC2	12	75434879	Nonstop_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	3146680	75434879	58417016	960	166920											
PPFIA2	8499	broad.mit.edu	37	chr12	81746848	81746848	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaattacatttttagtacaGtatcaaggtcttctaatttc	5	6	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81746848	C	C	81746848	1	2	214	0	1	0	0	0	0	0	0	0	12406	1044	36	4		4	PPFIA2	12	81746848	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	6311969	81746848	52105047	961	166921											
LRRIQ1	84125	broad.mit.edu	37	chr12	85449828	85449828	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatatttcaaatgataaGggtgatatagccaaaaatct	8	4	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85449828	T	T	85449828	3	4	214	1	0	0	0	0	1	0	0	0	9116	991	35	2	1283	2	LRRIQ1	12	85449828	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3702980	85449828	48402067	962	166922											
ALX1	8092	broad.mit.edu	37	chr12	85677633	85677633	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttgctctgaggacagaGctcactgaggccagggtcca	13	12	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85677633	A	A	85677633	2	1	214	1	0	0	0	0	0	0	0	1	556	962	34	4		4	ALX1	12	85677633	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	227805	85677633	48174262	963	166923											
CEP290	80184	broad.mit.edu	37	chr12	88483117	88483117	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttctttttcatcaagttTctgctctaagcgcaagttgt	7	9	5	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88483117	C	C	88483117	3	2	214	1	0	0	0	0	1	0	0	0	3283	1792	62	5	3814	5	CEP290	12	88483117	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	2805484	88483117	45368778	964	166924											
C12orf74	338809	broad.mit.edu	37	chr12	93100630	93100630	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccacctggggaagctggGgagctcctgtgggcttccca	15	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93100630	A	A	93100630	3	1	214	1	0	0	0	0	1	0	0	0	1727	1233	43	4	225	4	C12orf74	12	93100630	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4617513	93100630	40751265	965	166925											
NR2C1	7181	broad.mit.edu	37	chr12	95453709	95453709	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtctccacatactacgcAaagatcaaaaaccttatttg	4	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95453709	G	G	95453709	3	3	214	1	0	0	0	0	1	0	0	0	10717	130	5	5	1596	5	NR2C1	12	95453709	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	2353079	95453709	38398186	966	166926											
ANO4	121601	broad.mit.edu	37	chr12	101295476	101295476	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtttgcaaatccatcaacgGcgaagtgtggcaagccgccc	11	13	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101295476	C	C	101295476	1	2	214	0	1	0	0	0	0	0	0	0	699	1218	42	4		4	ANO4	12	101295476	5'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	5841767	101295476	32556419	967	166927											
ANO4	121601	broad.mit.edu	37	chr12	101413923	101413923	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaacaagattggtaaGtagtatgttagtataacaaa	9	2	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101413923	C	C	101413923	1	2	214	0	1	0	0	0	0	0	0	0	699	1044	36	4		4	ANO4	12	101413923	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	118447	101413923	32437972	968	166928											
FOXN4	121643	broad.mit.edu	37	chr12	109724462	109724462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggactcaccttgaagtaGgggaagtgctccttcatgaa	12	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109724462	T	T	109724462	2	4	214	1	0	0	0	0	0	0	0	1	6082	987	35	2		2	FOXN4	12	109724462	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	8310539	109724462	24127433	969	166929											
UBE3B	89910	broad.mit.edu	37	chr12	109968313	109968313	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtccataagtgcccacGctagcacattgctgagccca	9	15	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109968313	T	T	109968313	1	4	214	0	1	0	0	0	0	0	0	0	17006	1102	38	3		3	UBE3B	12	109968313	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	243851	109968313	23883582	970	166930											
IFT81	28981	broad.mit.edu	37	chr12	110628658	110628658	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgttatgtatgaaatttGtacatttcttatgggagcca	8	4	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110628658	T	T	110628658	1	4	214	0	1	0	0	0	0	0	0	0	7635	1392	48	3		3	IFT81	12	110628658	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	660345	110628658	23223237	971	166931											
ANAPC7	51434	broad.mit.edu	37	chr12	110824111	110824111	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaacaacagccactgtcttCctgccccaagaattacttac	4	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110824111	G	G	110824111	1	3	214	0	1	0	0	0	0	0	0	0	606	870	30	4		4	ANAPC7	12	110824111	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	195453	110824111	23027784	972	166932											
C12orf51	283450	broad.mit.edu	37	chr12	112673091	112673091	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttaagcaaaaaacaaagcTcattcaggaaaactgcagtg	7	8	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112673091	A	A	112673091	1	1	214	0	1	0	0	0	0	0	0	0	1709	1566	54	5		5	C12orf51	12	112673091	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1848980	112673091	21178804	973	166933											
PTPN11	5781	broad.mit.edu	37	chr12	112891116	112891116	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggagattttgttctttcTgtgcgcactggtgatgacaa	11	8	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112891116	C	C	112891116	2	2	214	1	0	0	0	0	0	0	0	1	12886	1567	55	5		5	PTPN11	12	112891116	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	218025	112891116	20960779	974	166934											
COX6A1	1337	broad.mit.edu	37	chr12	120876393	120876393	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgccttagtgcaagttcttCattctctgaaggcatgggtg	12	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120876393	T	T	120876393	1	4	214	0	1	0	0	0	0	0	0	0	3806	841	29	4		4	COX6A1	12	120876393	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	7985277	120876393	12975502	975	166935											
ZCCHC8	55596	broad.mit.edu	37	chr12	122966661	122966661	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgacacatttgaaaagaaTggtttcatgcaactcagaaa	7	7	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122966661	A	A	122966661	1	1	214	0	1	0	0	0	0	0	0	0	17720	1479	51	5		5	ZCCHC8	12	122966661	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	2090268	122966661	10885234	976	166936											
NCOR2	9612	broad.mit.edu	37	chr12	124824973	124824973	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacgtggtggttggttttgtCaagtgtgttggacctcctag	15	6	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124824973	G	G	124824973	3	3	214	1	0	0	0	0	1	0	0	0	10331	825	29	4	2237	4	NCOR2	12	124824973	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1858312	124824973	9026922	977	166937											
GLT1D1	144423	broad.mit.edu	37	chr12	129373266	129373266	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaaaaaaacacagtcatGggcagagttcttgaggaagc	13	7	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129373266	T	T	129373266	3	4	214	1	0	0	0	0	1	0	0	0	6529	1348	47	2	310	2	GLT1D1	12	129373266	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4548293	129373266	4478629	978	166938											
TMEM132D	121256	broad.mit.edu	37	chr12	129822344	129822344	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcgatctgcatgacctcGtaggaggcgccatccgcact	10	14	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129822344	T	T	129822344	4	4	214	1	0	0	0	0	0	1	0	0	16170	1140	40	3	2189	3	TMEM132D	12	129822344	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	449078	129822344	4029551	979	166939											
EP400	57634	broad.mit.edu	37	chr12	132534822	132534822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcccacgcagccgtctGtccatgctgcctaattcaga	9	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132534822	T	T	132534822	1	4	214	0	1	0	0	0	0	0	0	0	5191	1392	48	3		3	EP400	12	132534822	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2712478	132534822	1317073	980	166940											
MPHOSPH8	54737	broad.mit.edu	37	chr13	20237249	20237249	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtccagcaaagcaatggtGagactgcactgatgaaggta	12	7	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20237249	A	A	20237249	3	1	214	1	0	0	0	0	1	0	0	0	9821	1291	45	4	2036	4	MPHOSPH8	13	20237249	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08		20237249	94932629	981	166941											
USPL1	10208	broad.mit.edu	37	chr13	31232508	31232508	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggttaaaggcttaataaGcaggggtgcttcttttatgc	12	5	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31232508	T	T	31232508	3	4	214	1	0	0	0	0	1	0	0	0	17219	971	34	3	2324	3	USPL1	13	31232508	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	10995259	31232508	83937370	982	166942											
HSPH1	10808	broad.mit.edu	37	chr13	31724148	31724148	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtgttgtgctaatatcTtttccaaagaatttggcaat	8	5	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31724148	G	G	31724148	3	3	214	1	0	0	0	0	1	0	0	0	7501	1606	56	5	1540	5	HSPH1	13	31724148	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	491640	31724148	83445730	983	166943											
NBEA	26960	broad.mit.edu	37	chr13	35684977	35684977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctatacacatatttgtctGctgaatttattggaactgct	6	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35684977	T	T	35684977	3	4	214	1	0	0	0	0	1	0	0	0	10281	1319	46	3	1914	3	NBEA	13	35684977	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3960829	35684977	79484901	984	166944											
DCLK1	9201	broad.mit.edu	37	chr13	36401822	36401822	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttggcacatccatctcctCaatcagaagaacgatattgg	8	10	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36401822	A	A	36401822	4	1	214	1	0	0	0	0	0	1	0	0	4324	835	29	3	868	3	DCLK1	13	36401822	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	716845	36401822	78768056	985	166945											
FREM2	341640	broad.mit.edu	37	chr13	39263777	39263777	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaccttggtcttgactgacAacccctcagtcgtggtgacc	10	13	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39263777	T	T	39263777	3	4	214	1	0	0	0	0	1	0	0	0	6105	130	5	5	2298	5	FREM2	13	39263777	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	2861955	39263777	75906101	986	166946											
NAA16	79612	broad.mit.edu	37	chr13	41933097	41933097	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtgctccaagttcacaaGggtaggaaatagcatgcatg	11	7	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41933097	T	T	41933097	3	4	214	1	0	0	0	0	1	0	0	0	10213	1014	35	2	1488	2	NAA16	13	41933097	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2669320	41933097	73236781	987	166947											
LRCH1	23143	broad.mit.edu	37	chr13	47279214	47279214	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actctttagattaagcacagAtattacagagagaagtgttt	8	5	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47279214	G	G	47279214	3	3	214	1	0	0	0	0	1	0	0	0	9019	333	12	5	1458	5	LRCH1	13	47279214	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	5346117	47279214	67890664	988	166948											
RCBTB2	1102	broad.mit.edu	37	chr13	49089625	49089625	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctaatttccatgcttttTtttttaaccttttattcctt	1	9	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49089625	C	C	49089625	1	2	214	0	1	0	0	0	0	0	0	0	13280	1856	64	5		5	RCBTB2	13	49089625	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1810411	49089625	66080253	989	166949											
OLFM4	10562	broad.mit.edu	37	chr13	53608428	53608428	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatttctgtcactccagttGccaaaagctcagattccagc	6	13	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53608428	T	T	53608428	1	4	214	0	1	0	0	0	0	0	0	0	10950	1334	46	3		3	OLFM4	13	53608428	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4518803	53608428	61561450	990	166950											
PCDH17	27253	broad.mit.edu	37	chr13	58209170	58209170	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgtccctcaggggcacgcGggctgccacaccagcttcac	11	17	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58209170	C	C	58209170	2	2	214	1	0	0	0	0	0	0	0	1	11606	1103	39	4		4	PCDH17	13	58209170	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	4600742	58209170	56960708	991	166951											
PCDH20	64881	broad.mit.edu	37	chr13	61986227	61986227	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgacccatccatttcgtcCagcgtcagcatctgttacac	8	15	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61986227	A	A	61986227	4	1	214	1	0	0	0	0	0	1	0	0	11609	603	21	2	854	2	PCDH20	13	61986227	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3777057	61986227	53183651	992	166952											
PIBF1	10464	broad.mit.edu	37	chr13	73401819	73401819	+	Intron	SNP	G	C	C													aaattaatacagtcaagcttGaaaagtaagatggcatcact							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73401819	C	C	73401819	1	2	214	0	1	0	0	0	0	0	0	0	11974	1305	45	4		4	PIBF1	13	73401819	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	11415592	73401819	41768059	993	166953	702	2									
PIBF1	10464	broad.mit.edu	37	chr13	73401828	73401828	+	Intron	SNP	G	C	C													cagtcaagcttgaaaagtaaGatggcatcactgtggatact							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73401828	C	C	73401828	1	2	214	0	1	0	0	0	0	0	0	0	11974	957	33	4		4	PIBF1	13	73401828	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	9	73401828	41768050	994	166954	702	2									
UCHL3	7347	broad.mit.edu	37	chr13	76124109	76124109	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtgttctctgtttcgttttCaggtcaccaaccaggtgagt	10	10	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76124109	G	G	76124109	1	3	214	0	1	0	0	0	0	0	0	0	17047	841	29	4		4	UCHL3	13	76124109	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2722281	76124109	39045769	995	166955											
MYCBP2	23077	broad.mit.edu	37	chr13	77786258	77786258	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagctggctttgcattccaaTatggcacatccaaaattggt	9	9	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77786258	C	C	77786258	3	2	214	1	0	0	0	0	1	0	0	0	10112	1406	49	5	11189	5	MYCBP2	13	77786258	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	1662149	77786258	37383620	996	166956											
SCEL	8796	broad.mit.edu	37	chr13	78167670	78167670	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcaggatcttgataacatCgtcaaagtggccacttcact	8	10	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78167670	T	T	78167670	2	4	214	1	0	0	0	0	0	0	0	1	14000	874	31	4		4	SCEL	13	78167670	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	381412	78167670	37002208	997	166957											
POU4F1	5457	broad.mit.edu	37	chr13	79175510	79175510	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccccccaaaaatgcctcctCagctccccattctgtcccgc	5	21	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79175510	A	A	79175510	1	1	214	0	1	0	0	0	0	0	0	0	12374	841	29	3		3	POU4F1	13	79175510	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	1007840	79175510	35994368	998	166958											
TGDS	23483	broad.mit.edu	37	chr13	95231010	95231010	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgtgctgtagcaaagaTataaattttggaataaccta	8	5	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95231010	A	A	95231010	2	1	214	1	0	0	0	0	0	0	0	1	15937	1396	49	5		5	TGDS	13	95231010	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	16055500	95231010	19938868	999	166959											
DZIP1	22873	broad.mit.edu	37	chr13	96285425	96285425	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaaatgcactggaccaagtCtcattgccaaaagaaaaagg	10	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96285425	G	G	96285425	1	3	214	0	1	0	0	0	0	0	0	0	4903	928	32	4		4	DZIP1	13	96285425	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1054415	96285425	18884453	1000	166960											
FARP1	10160	broad.mit.edu	37	chr13	99017619	99017619	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctttcattgagaacttaGgtcttaatctgttctttttt	5	7	5	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99017619	T	T	99017619	1	4	214	0	1	0	0	0	0	0	0	0	5733	1015	35	2		2	FARP1	13	99017619	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2732194	99017619	16152259	1001	166961											
PCCA	5095	broad.mit.edu	37	chr13	100925576	100925576	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctaagaagaatttttatttCttggaaatgaatacaagact	6	4	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100925576	G	G	100925576	3	3	214	1	0	0	0	0	1	0	0	0	11598	912	32	4	1087	4	PCCA	13	100925576	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1907957	100925576	14244302	1002	166962											
FGF14	2259	broad.mit.edu	37	chr13	102671010	102671010	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccagccctgaggcctccTcttccagccctgaggtcact	8	19	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102671010	C	C	102671010	1	2	214	0	1	0	0	0	0	0	0	0	5900	1566	54	5		5	FGF14	13	102671010	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1745434	102671010	12498868	1003	166963											
TPP2	7174	broad.mit.edu	37	chr13	103290630	103290630	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcccctaacgcaggtccgctCttcagagttccgatcactgc	8	16	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103290630	A	A	103290630	2	1	214	1	0	0	0	0	0	0	0	1	16536	900	32	3		3	TPP2	13	103290630	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	619620	103290630	11879248	1004	166964											
C13orf27	93081	broad.mit.edu	37	chr13	103420527	103420527	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatccttaaattagcttcctAtgatcaactaattttaattc	2	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103420527	G	G	103420527	1	3	214	0	1	0	0	0	0	0	0	0	1736	464	16	5		5	C13orf27	13	103420527	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	129897	103420527	11749351	1005	166965											
ERCC5	2073	broad.mit.edu	37	chr13	103492148	103492148	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactcggcatggaaaaagaTgtctagtatccatgagagaa	12	6	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103492148	A	A	103492148	3	1	214	1	0	0	0	0	1	0	0	0	5258	1464	51	5		5	ERCC5	13	103492148	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	71621	103492148	11677730	1006	166966											
ERCC5	2073	broad.mit.edu	37	chr13	103514690	103514690	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attaagagagctcttgacgaTgacgaagatgtaaaagtgtg	12	4	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103514690	A	A	103514690	3	1	214	1	0	0	0	0	1	0	0	0	5258	1461	51	5	1221	5	ERCC5	13	103514690	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	22542	103514690	11655188	1007	166967											
SLC10A2	6555	broad.mit.edu	37	chr13	103703866	103703866	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagagacaaaacctcagcaGtctccttgtccctgggggaa	10	12	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103703866	C	C	103703866	1	2	214	0	1	0	0	0	0	0	0	0	14487	1044	36	4		4	SLC10A2	13	103703866	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	189176	103703866	11466012	1008	166968											
MYO16	23026	broad.mit.edu	37	chr13	109438076	109438076	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagctctatcctgttgaccTatctggatgaaaatggtagg	10	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109438076	A	A	109438076	3	1	214	1	0	0	0	0	1	0	0	0	10158	1522	53	5	549	5	MYO16	13	109438076	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	5734210	109438076	5731802	1009	166969											
MYO16	23026	broad.mit.edu	37	chr13	109562599	109562599	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acttttcagagacaaaatggTgagtaaaagataactgttgg	10	4	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109562599	A	A	109562599	1	1	214	0	1	0	0	0	0	0	0	0	10158	1711	59	5		5	MYO16	13	109562599	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	124523	109562599	5607279	1010	166970											
MYO16	23026	broad.mit.edu	37	chr13	109753146	109753146	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcacaggtataagccactgGctgatacattcctgcgtgag	10	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109753146	C	C	109753146	3	2	214	1	0	0	0	0	1	0	0	0	10158	1203	42	4	3389	4	MYO16	13	109753146	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	190547	109753146	5416732	1011	166971											
COL4A1	1282	broad.mit.edu	37	chr13	110853876	110853876	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgtgcctataacctgaatCgagaaggaaaaggtgatcat	10	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110853876	T	T	110853876	1	4	214	0	1	0	0	0	0	0	0	0	3721	899	31	4		4	COL4A1	13	110853876	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1100730	110853876	4316002	1012	166972											
GRTP1	79774	broad.mit.edu	37	chr13	114005344	114005344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttccacaagcctcccacCcctccagctgccccgagggt	8	20	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114005344	A	A	114005344	1	1	214	0	1	0	0	0	0	0	0	0	6876	638	22	2		2	GRTP1	13	114005344	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3151468	114005344	1164534	1013	166973											
ATP4B	496	broad.mit.edu	37	chr13	114306064	114306064	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaagggaaaagcttgagcGtggccgctccccacccccac	11	15	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114306064	T	T	114306064	1	4	214	0	1	0	0	0	0	0	0	0	1150	1160	40	3		3	ATP4B	13	114306064	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	300720	114306064	863814	1014	166974											
CDC16	8881	broad.mit.edu	37	chr13	115022719	115022719	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggagagtaagtactggaaGaccagaaacccttctgttaa	10	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115022719	T	T	115022719	1	4	214	0	1	0	0	0	0	0	0	0	3088	957	33	3		3	CDC16	13	115022719	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	716655	115022719	147159	1015	166975											
POTEG	404785	broad.mit.edu	37	chr14	19553819	19553819	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatggagccgaggtaccacGtccgtcgagaagatctggac	13	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19553819	A	A	19553819	3	1	214	1	0	0	0	0	1	0	0	0	12362	1145	40	4	405	4	POTEG	14	19553819	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08		19553819	87795721	1016	166976											
OR4K15	81127	broad.mit.edu	37	chr14	20444457	20444457	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaagcatggcgaaggcCcgctccacattgactgctca	10	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20444457	A	A	20444457	2	1	214	1	0	0	0	0	0	0	0	1	11164	610	22	2		2	OR4K15	14	20444457	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	890638	20444457	86905083	1017	166977											
OR11H4	390442	broad.mit.edu	37	chr14	20711609	20711609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcccttgtcctctttttcaCtagtatgtacattcttcgat	4	12	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20711609	A	A	20711609	3	1	214	1	0	0	0	0	1	0	0	0	11022	565	20	3	661	3	OR11H4	14	20711609	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	267152	20711609	86637931	1018	166978											
TEP1	7011	broad.mit.edu	37	chr14	20841524	20841524	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacagcagcagcacggactGggccgctgtgtcccaggagg	15	12	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20841524	C	C	20841524	3	2	214	1	0	0	0	0	1	0	0	0	15881	1348	47	4	1200	4	TEP1	14	20841524	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	129915	20841524	86508016	1019	166979			3	134		5	5	2424	G		6.031717e-06
TEP1	7011	broad.mit.edu	37	chr14	20841762	20841762	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgataagacacagagactGagtcagaagaagggacggag	15	6	1	6			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20841762	C	C	20841762	1	2	214	0	1	0	0	0	0	0	0	0	15881	1305	45	4		4	TEP1	14	20841762	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	238	20841762	86507778	1020	166980			3	134		5	5	2424	G		6.031717e-06
TEP1	7011	broad.mit.edu	37	chr14	20841812	20841812	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagagacagcagggaaGgggaggtggctgacgttttg	18	4	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20841812	C	C	20841812	1	2	214	0	1	0	0	0	0	0	0	0	15881	1015	35	4		4	TEP1	14	20841812	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	50	20841812	86507728	1021	166981			3	134		5	5	2424	G		6.031717e-06
TEP1	7011	broad.mit.edu	37	chr14	20841881	20841881	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacagtggctaatgggtcctGagtgagcagggatgctggtc	16	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20841881	C	C	20841881	4	2	214	1	0	0	0	0	0	1	0	0	15881	1294	45	4	1367	4	TEP1	14	20841881	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	69	20841881	86507659	1022	166982			3	134		5	5	2424	G		6.031717e-06
TEP1	7011	broad.mit.edu	37	chr14	20843947	20843947	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggtccaggcacagccagtGacccagtcacggtgacaggc	13	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20843947	A	A	20843947	2	1	214	1	0	0	0	0	0	0	0	1	15881	1277	45	4		4	TEP1	14	20843947	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2066	20843947	86505593	1023	166983			3	134		5	5	2424	G		6.031717e-06
TEP1	7011	broad.mit.edu	37	chr14	20864787	20864787	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctcacacataccgcatgcTggagtctctggagaatgagc	10	13	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20864787	A	A	20864787	3	1	214	1	0	0	0	0	1	0	0	0	15881	1580	55	5	6415	5	TEP1	14	20864787	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	20840	20864787	86484753	1024	166984											
TEP1	7011	broad.mit.edu	37	chr14	20876171	20876171	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaattgctgttgttcacaCggtacaaatcagcttgcgtc	10	10	2	0	rs111250999		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20876171	T	T	20876171	3	4	214	1	0	0	0	0	1	0	0	0	15881	536	19	4	7671	4	TEP1	14	20876171	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	11384	20876171	86473369	1025	166985											
RNASE11	122651	broad.mit.edu	37	chr14	21052079	21052079	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctcatcagagaatgaccTgtcagcactgtcaatatctt	7	11	5	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21052079	A	A	21052079	2	1	214	1	0	0	0	0	0	0	0	1	13512	1567	55	5		5	RNASE11	14	21052079	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	175908	21052079	86297461	1026	166986											
OR6S1	341799	broad.mit.edu	37	chr14	21108870	21108870	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttttactttactgctttCtcactgagacatttatcaag	4	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21108870	A	A	21108870	3	1	214	1	0	0	0	0	1	0	0	0	11303	912	32	3	18	3	OR6S1	14	21108870	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	56791	21108870	86240670	1027	166987											
METT11D1	64745	broad.mit.edu	37	chr14	21465051	21465051	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggatccctctgagagttgatGaggatgtgtaacaagtattt	12	5	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21465051	C	C	21465051	1	2	214	0	1	0	0	0	0	0	0	0	9584	1305	45	4		4	METT11D1	14	21465051	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	356181	21465051	85884489	1028	166988											
RNASE13	440163	broad.mit.edu	37	chr14	21502310	21502310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacaatagccccggaaaccCtttgggtagttaaccctggg	10	11	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21502310	A	A	21502310	3	1	214	1	0	0	0	0	1	0	0	0	13514	680	24	2	336	2	RNASE13	14	21502310	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	37259	21502310	85847230	1029	166989											
CHD8	57680	broad.mit.edu	37	chr14	21897346	21897346	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaccttggcaggctgccctTgggcattcttggcttgagtc	12	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21897346	A	A	21897346	3	1	214	1	0	0	0	0	1	0	0	0	3362	1812	63	5	6897	5	CHD8	14	21897346	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	395036	21897346	85452194	1030	166990											
MYH7	4625	broad.mit.edu	37	chr14	23888489	23888489	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctccttctcatccagcTgccgggacagctcacctggg	11	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23888489	A	A	23888489	3	1	214	1	0	0	0	0	1	0	0	0	10133	1580	55	5	1986	5	MYH7	14	23888489	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	1991143	23888489	83461051	1031	166991											
ADCY4	196883	broad.mit.edu	37	chr14	24788449	24788449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcccaccagggtgggcCagtgagggcacaggaataag	16	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24788449	A	A	24788449	1	1	214	0	1	0	0	0	0	0	0	0	296	609	21	2		2	ADCY4	14	24788449	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	899960	24788449	82561091	1032	166992											
CMA1	1215	broad.mit.edu	37	chr14	24976708	24976708	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattctgtgcccccgatgatCtcccctggaacagagcaccc	8	17	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24976708	G	G	24976708	3	3	214	1	0	0	0	0	1	0	0	0	3606	912	32	4	696	4	CMA1	14	24976708	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	188259	24976708	82372832	1033	166993											
GZMB	3002	broad.mit.edu	37	chr14	25101352	25101352	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaggcaagaaagtccaGgtcagccaacgaacttctgg	13	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25101352	T	T	25101352	1	4	214	0	1	0	0	0	0	0	0	0	6981	1015	35	2		2	GZMB	14	25101352	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	124644	25101352	82248188	1034	166994											
COCH	1690	broad.mit.edu	37	chr14	31355160	31355160	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacattgcctttctaattgaTggctccagcagtgttggaga	10	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31355160	A	A	31355160	3	1	214	1	0	0	0	0	1	0	0	0	3688	1461	51	5	1157	5	COCH	14	31355160	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	6253808	31355160	75994380	1035	166995											
KIAA0391	9692	broad.mit.edu	37	chr14	35731876	35731876	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggaactggctgccgttcaGactatttgtagtcatgtaca	10	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35731876	C	C	35731876	1	2	214	0	1	0	0	0	0	0	0	0	8242	957	33	4		4	KIAA0391	14	35731876	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4376716	35731876	71617664	1036	166996											
KIAA0391	9692	broad.mit.edu	37	chr14	35732111	35732111	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattaatccttgaaggtaatGacattgagcttgtttccaat	7	6	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35732111	C	C	35732111	1	2	214	0	1	0	0	0	0	0	0	0	8242	1305	45	4		4	KIAA0391	14	35732111	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	235	35732111	71617429	1037	166997											
C14orf106	55320	broad.mit.edu	37	chr14	45686182	45686182	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgaaagatacaaaagTcaatacagataaggaaaaca	6	4	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45686182	C	C	45686182	1	2	214	0	1	0	0	0	0	0	0	0	1751	1682	58	5		5	C14orf106	14	45686182	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	9954071	45686182	61663358	1038	166998											
TRIM9	114088	broad.mit.edu	37	chr14	51448484	51448484	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcctgatcagaagccaacGtgaagaaggcttggtttggg	13	8	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51448484	T	T	51448484	1	4	214	0	1	0	0	0	0	0	0	0	16674	1160	40	3		3	TRIM9	14	51448484	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5762302	51448484	55901056	1039	166999											
WDHD1	11169	broad.mit.edu	37	chr14	55467193	55467193	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatcacagaaacattttgaaGaaactgttgtaccatactcc	6	9	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55467193	C	C	55467193	1	2	214	0	1	0	0	0	0	0	0	0	17398	957	33	4		4	WDHD1	14	55467193	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4018709	55467193	51882347	1040	167000											
FBXO34	55030	broad.mit.edu	37	chr14	55765774	55765774	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagatttcaacagcaatttCgaaacctgtagggtttggag	12	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55765774	G	G	55765774	1	3	214	0	1	0	0	0	0	0	0	0	5801	899	31	4		4	FBXO34	14	55765774	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	298581	55765774	51583766	1041	167001											
FNTB	2342	broad.mit.edu	37	chr14	65527989	65527989	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agccagtcccaggttttgagGagcttaaggatgagacatcg	13	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65527989	C	C	65527989	3	2	214	1	0	0	0	0	1	0	0	0	6036	1175	41	4	1319	4	FNTB	14	65527989	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	9762215	65527989	41821551	1042	167002											
ARG2	384	broad.mit.edu	37	chr14	68087704	68087704	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtggttagatttttagAtattagtgcaggactagtaa	11	2	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68087704	G	G	68087704	1	3	214	0	1	0	0	0	0	0	0	0	860	348	12	5		5	ARG2	14	68087704	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	2559715	68087704	39261836	1043	167003											
GALNTL1	57452	broad.mit.edu	37	chr14	69787507	69787507	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggctggagaggacccctAcagacagcacgccttcaacc	11	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69787507	G	G	69787507	3	3	214	1	0	0	0	0	1	0	0	0	6283	391	14	5	263	5	GALNTL1	14	69787507	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	1699803	69787507	37562033	1044	167004											
RGS6	9628	broad.mit.edu	37	chr14	72431597	72431597	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcgtttactgcaaagtaaGgcgcctggtcaagtgccgtg	13	9	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72431597	T	T	72431597	1	4	214	0	1	0	0	0	0	0	0	0	13418	1015	35	2		2	RGS6	14	72431597	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2644090	72431597	34917943	1045	167005											
RGS6	9628	broad.mit.edu	37	chr14	72932426	72932426	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttataattccattgtgctGctggttttgtacatgttgtc	9	7	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72932426	T	T	72932426	1	4	214	0	1	0	0	0	0	0	0	0	13418	1334	46	3		3	RGS6	14	72932426	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	500829	72932426	34417114	1046	167006											
PSEN1	5663	broad.mit.edu	37	chr14	73683772	73683772	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agtagggcagtgatatttttGaattgtgaaatcatagcaaa	10	3	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73683772	C	C	73683772	1	2	214	0	1	0	0	0	0	0	0	0	12756	1305	45	4		4	PSEN1	14	73683772	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	751346	73683772	33665768	1047	167007											
C14orf43	91748	broad.mit.edu	37	chr14	74193518	74193518	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctcacttgctgccccCaggcccctcctcaccttgcc	6	23	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74193518	A	A	74193518	1	1	214	0	1	0	0	0	0	0	0	0	1787	609	21	2		2	C14orf43	14	74193518	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	509746	74193518	33156022	1048	167008											
NPC2	10577	broad.mit.edu	37	chr14	74959988	74959988	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaacgcatcgcggataacGaagttccaagctcgggaaag	13	9	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74959988	A	A	74959988	1	1	214	0	1	0	0	0	0	0	0	0	10667	1073	37	4		4	NPC2	14	74959988	5'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	766470	74959988	32389552	1049	167009											
KIAA0317	9870	broad.mit.edu	37	chr14	75142581	75142581	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acagttggtagcattataaaGataagcctcaaagtaaatgc	8	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75142581	C	C	75142581	3	2	214	1	0	0	0	0	1	0	0	0	8237	942	33	4	1622	4	KIAA0317	14	75142581	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	182593	75142581	32206959	1050	167010											
C14orf1	11161	broad.mit.edu	37	chr14	76121288	76121288	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgatgagagcagcgtccaGatcccaaaggtccgagcttg	12	11	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76121288	A	A	76121288	2	1	214	1	0	0	0	0	0	0	0	1	1746	932	33	4		4	C14orf1	14	76121288	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	978707	76121288	31228252	1051	167011											
TTLL5	23093	broad.mit.edu	37	chr14	76330044	76330044	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggatttgcctgggaaggaGaagtagaaaacaacgtgtac	15	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76330044	T	T	76330044	4	4	214	1	0	0	0	0	0	1	0	0	16856	943	33	3	3471	3	TTLL5	14	76330044	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	208756	76330044	31019496	1052	167012											
TTLL5	23093	broad.mit.edu	37	chr14	76349199	76349199	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttcccaaacccccacccAaccacgaacaagtgctcaga	6	17	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76349199	T	T	76349199	3	4	214	1	0	0	0	0	1	0	0	0	16856	130	5	5	3808	5	TTLL5	14	76349199	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	19155	76349199	31000341	1053	167013											
PTPN21	11099	broad.mit.edu	37	chr14	88934347	88934347	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttcagcgtgccgccattCagactgcgccacttacgtcc	8	17	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88934347	G	G	88934347	1	3	214	0	1	0	0	0	0	0	0	0	12894	841	29	4		4	PTPN21	14	88934347	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	12585148	88934347	18415193	1054	167014											
ZC3H14	79882	broad.mit.edu	37	chr14	89069242	89069242	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatggtgtccccagccccCcaggatacatgtcagatcaa	10	13	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89069242	T	T	89069242	3	4	214	1	0	0	0	0	1	0	0	0	17692	623	22	4	2020	4	ZC3H14	14	89069242	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	134895	89069242	18280298	1055	167015											
ZC3H14	79882	broad.mit.edu	37	chr14	89073830	89073830	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccagcaagtaccatcccCcacatctcaaccctcaagtg	4	19	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89073830	G	G	89073830	1	3	214	0	1	0	0	0	0	0	0	0	17692	638	22	4		4	ZC3H14	14	89073830	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4588	89073830	18275710	1056	167016											
KCNK13	56659	broad.mit.edu	37	chr14	90651285	90651285	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggacaatgaattctcaGggggggtgggagcctttgca	16	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90651285	T	T	90651285	3	4	214	1	0	0	0	0	1	0	0	0	8131	1000	35	2	1171	2	KCNK13	14	90651285	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1577455	90651285	16698255	1057	167017											
TC2N	123036	broad.mit.edu	37	chr14	92251584	92251584	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatttctttttcactctgTataagtggaaaaatcatagt	5	6	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92251584	C	C	92251584	3	2	214	1	0	0	0	0	1	0	0	0	15787	1628	57	5	196	5	TC2N	14	92251584	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	1600299	92251584	15097956	1058	167018											
SERPINA1	5265	broad.mit.edu	37	chr14	94849012	94849012	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacaattttcccttgagtaCccttctccacgtaatcgttg	5	14	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94849012	T	T	94849012	3	4	214	1	0	0	0	0	1	0	0	0	14199	507	18	4	709	4	SERPINA1	14	94849012	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2597428	94849012	12500528	1059	167019											
SERPINA12	145264	broad.mit.edu	37	chr14	94964298	94964298	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccaaaaacttacgctgtGgctgcagcctctggtcaatg	9	12	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94964298	A	A	94964298	3	1	214	1	0	0	0	0	1	0	0	0	14202	1348	47	4	823	4	SERPINA12	14	94964298	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	115286	94964298	12385242	1060	167020											
GLRX5	51218	broad.mit.edu	37	chr14	96010235	96010235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacatatttagtcatgaatGgttcagcttttaccatttaa	5	6	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96010235	T	T	96010235	1	4	214	0	1	0	0	0	0	0	0	0	6526	1363	47	2		2	GLRX5	14	96010235	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1045937	96010235	11339305	1061	167021											
CYFIP1	23191	broad.mit.edu	37	chr15	22935909	22935909	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggagtgtcagtaacatctAtaagttggatgccaagaaaa	11	5	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22935909	G	G	22935909	3	3	214	1	0	0	0	0	1	0	0	0	4170	449	16	5	875	5	CYFIP1	15	22935909	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08		22935909	79595483	1062	167022											
NIPA1	123606	broad.mit.edu	37	chr15	23052736	23052736	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgagcttttccttcaggaGataggaagctaaaatggacc	11	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23052736	A	A	23052736	3	1	214	1	0	0	0	0	1	0	0	0	10517	942	33	4	660	4	NIPA1	15	23052736	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	116827	23052736	79478656	1063	167023											
GABRG3	2567	broad.mit.edu	37	chr15	27586134	27586134	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggggtgtgttttggaggGaaagaagggcaagatggctg	19	2	0	2	rs73365231	by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27586134	T	T	27586134	1	4	214	0	1	0	0	0	0	0	0	0	6233	1189	41	3		3	GABRG3	15	27586134	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4533398	27586134	74945258	1064	167024											
OCA2	4948	broad.mit.edu	37	chr15	28196864	28196864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaagtcagtgtctgggaaCaggctctgaaaccttcccat	10	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28196864	A	A	28196864	1	1	214	0	1	0	0	0	0	0	0	0	10910	493	17	3		3	OCA2	15	28196864	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	610730	28196864	74334528	1065	167025											
HERC2	8924	broad.mit.edu	37	chr15	28510945	28510945	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctgctgcatgctcccactCatgcagagcagacgtaccat	8	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28510945	A	A	28510945	1	1	214	0	1	0	0	0	0	0	0	0	7125	841	29	3		3	HERC2	15	28510945	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	314081	28510945	74020447	1066	167026											
OTUD7A	161725	broad.mit.edu	37	chr15	32058305	32058305	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	taagtagtcaagatgtttttCcactgcagtctgcaagtaag	9	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32058305	T	T	32058305	1	4	214	0	1	0	0	0	0	0	0	0	11412	870	30	4		4	OTUD7A	15	32058305	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3547360	32058305	70473087	1067	167027											
RYR3	6263	broad.mit.edu	37	chr15	34030868	34030868	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gataataacagccgtcatctGtttagcattccatttgccag	7	10	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34030868	A	A	34030868	1	1	214	0	1	0	0	0	0	0	0	0	13881	1392	48	4		4	RYR3	15	34030868	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1972563	34030868	68500524	1068	167028											
ATPBD4	89978	broad.mit.edu	37	chr15	35746840	35746840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatttagttccatggagcaCgtagactaccatacctattt	6	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35746840	A	A	35746840	1	1	214	0	1	0	0	0	0	0	0	0	1206	551	19	3		3	ATPBD4	15	35746840	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1715972	35746840	66784552	1069	167029											
PLCB2	5330	broad.mit.edu	37	chr15	40582700	40582700	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcatctttgggaagtgagtCaggatccatttgtagagagg	14	5	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40582700	G	G	40582700	1	3	214	0	1	0	0	0	0	0	0	0	12123	841	29	4		4	PLCB2	15	40582700	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4835860	40582700	61948692	1070	167030											
C15orf23	90417	broad.mit.edu	37	chr15	40678683	40678683	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacaaaaatcaccaaactgaGacgagagaatgggtgagaac	10	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40678683	T	T	40678683	3	4	214	1	0	0	0	0	1	0	0	0	1798	942	33	3	435	3	C15orf23	15	40678683	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	95983	40678683	61852709	1071	167031											
IVD	3712	broad.mit.edu	37	chr15	40708234	40708234	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcttttggtaactgagaGagtgttccagcatgttgacc	11	9	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40708234	T	T	40708234	1	4	214	0	1	0	0	0	0	0	0	0	7998	957	33	3		3	IVD	15	40708234	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	29551	40708234	61823158	1072	167032											
RTF1	23168	broad.mit.edu	37	chr15	41769591	41769591	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accccatagatatctgagttCagggctcagtggttccctcc	9	13	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41769591	T	T	41769591	1	4	214	0	1	0	0	0	0	0	0	0	13832	841	29	4		4	RTF1	15	41769591	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1061357	41769591	60761801	1073	167033											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42139582	42139582	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caggagcaggggatcccgttCccacccatctcgcccagccc	10	19	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42139582	A	A	42139582	3	1	214	1	0	0	0	0	1	0	0	0	8025	854	30	3	2782	3	JMJD7-PLA2G4B	15	42139582	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	369991	42139582	60391810	1074	167034											
DUOX2	50506	broad.mit.edu	37	chr15	45398546	45398546	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaagggataattgggCcgggtagttcagcagatgtc	17	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45398546	A	A	45398546	1	1	214	0	1	0	0	0	0	0	0	0	4841	754	26	3		3	DUOX2	15	45398546	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3258964	45398546	57132846	1075	167035											
TRPM7	54822	broad.mit.edu	37	chr15	50916388	50916388	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaagttcttccagtctcGgaatggtaaggaatttatgc	10	6	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50916388	A	A	50916388	3	1	214	1	0	0	0	0	1	0	0	0	16716	1116	39	4	4294	4	TRPM7	15	50916388	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5517842	50916388	51615004	1076	167036											
SCG3	29106	broad.mit.edu	37	chr15	51981348	51981348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtttgactacagtttagTccacattattttttaataac	4	7	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51981348	A	A	51981348	1	1	214	0	1	0	0	0	0	0	0	0	14004	1682	58	5		5	SCG3	15	51981348	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1064960	51981348	50550044	1077	167037											
ARPP19	10776	broad.mit.edu	37	chr15	52844126	52844126	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agattcatgcagttcagcctCttaatcagccagccagcttg	8	12	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52844126	G	G	52844126	1	3	214	0	1	0	0	0	0	0	0	0	981	928	32	4		4	ARPP19	15	52844126	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	862778	52844126	49687266	1078	167038											
UNC13C	440279	broad.mit.edu	37	chr15	54307662	54307662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgactctgatgtctacacGgagccctattactataaagc	7	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54307662	T	T	54307662	2	4	214	1	0	0	0	0	0	0	0	1	17112	1103	39	1		1	UNC13C	15	54307662	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1463536	54307662	48223730	1079	167039											
ANXA2	302	broad.mit.edu	37	chr15	60649389	60649389	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgcagctcctggttggttCtggagcagatgatctcaatg	12	10	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60649389	A	A	60649389	3	1	214	1	0	0	0	0	1	0	0	0	718	913	32	3	647	3	ANXA2	15	60649389	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	6341727	60649389	41882003	1080	167040											
VPS13C	54832	broad.mit.edu	37	chr15	62202476	62202476	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctcacacaaagtttgcctGacaaactttctggccaaaat	5	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62202476	C	C	62202476	4	2	214	1	0	0	0	0	0	1	0	0	17318	1294	45	4	2633	4	VPS13C	15	62202476	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1553087	62202476	40328916	1081	167041											
RPS27L	51065	broad.mit.edu	37	chr15	63449499	63449499	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgagccgcctcgccactctCggacactacaggcccgagag	11	17	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63449499	G	G	63449499	1	3	214	0	1	0	0	0	0	0	0	0	13751	899	31	4		4	RPS27L	15	63449499	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1247023	63449499	39081893	1082	167042											
DENND4A	10260	broad.mit.edu	37	chr15	65995143	65995143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtgataaagcatattaCgggaggataaatatccaatt	9	4	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65995143	A	A	65995143	1	1	214	0	1	0	0	0	0	0	0	0	4473	551	19	3		3	DENND4A	15	65995143	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2545644	65995143	36536249	1083	167043											
SPESP1	246777	broad.mit.edu	37	chr15	69238346	69238346	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcaaaacaaactgaggCaccaagaatgttgccagttg	10	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69238346	A	A	69238346	3	1	214	1	0	0	0	0	1	0	0	0	15158	710	25	3	479	3	SPESP1	15	69238346	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3243203	69238346	33293046	1084	167044											
NOX5	79400	broad.mit.edu	37	chr15	69339717	69339717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggggagaccagcgtcaccCcccatctctcttctctgatg	9	16	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69339717	A	A	69339717	1	1	214	0	1	0	0	0	0	0	0	0	10654	638	22	2		2	NOX5	15	69339717	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	101371	69339717	33191675	1085	167045											
GOLGA6B	55889	broad.mit.edu	37	chr15	72953689	72953689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaacgcacacgtgacaCaggtgaggctttgcagaggg	15	9	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72953689	A	A	72953689	3	1	214	1	0	0	0	0	1	0	0	0	6622	479	17	3	679	3	GOLGA6B	15	72953689	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3613972	72953689	29577703	1086	167046											
STRA6	64220	broad.mit.edu	37	chr15	74487672	74487672	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggacactctgccctctGccagacctggaccccaaggt	11	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74487672	T	T	74487672	3	4	214	1	0	0	0	0	1	0	0	0	15440	1328	46	3	1487	3	STRA6	15	74487672	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1533983	74487672	28043720	1087	167047											
ARID3B	10620	broad.mit.edu	37	chr15	74865420	74865420	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtatatctggtataagacttCagcaagatggaatttttcac	8	6	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74865420	T	T	74865420	1	4	214	0	1	0	0	0	0	0	0	0	919	841	29	4		4	ARID3B	15	74865420	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	377748	74865420	27665972	1088	167048											
MAN2C1	4123	broad.mit.edu	37	chr15	75654118	75654118	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctccaggcggactcacccCagcctcagcccctcagcact	8	20	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75654118	T	T	75654118	1	4	214	0	1	0	0	0	0	0	0	0	9310	609	21	4		4	MAN2C1	15	75654118	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	788698	75654118	26877274	1089	167049											
CSPG4	1464	broad.mit.edu	37	chr15	75974658	75974658	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgagtgaagttcaccagGgcctcccctgtgctgtcctg	12	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75974658	T	T	75974658	2	4	214	1	0	0	0	0	0	0	0	1	3994	1219	43	2		2	CSPG4	15	75974658	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	320540	75974658	26556734	1090	167050											
SGK269	79834	broad.mit.edu	37	chr15	77471964	77471964	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggattgaagccacaatctGagaaagcactgtgcttgctt	10	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77471964	A	A	77471964	4	1	214	1	0	0	0	0	0	1	0	0	14324	1299	45	4	2951	4	SGK269	15	77471964	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1497306	77471964	25059428	1091	167051											
SGK269	79834	broad.mit.edu	37	chr15	77472167	77472167	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgaaccttctgagccactGagccccttttatgctctgtg	8	13	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77472167	C	C	77472167	4	2	214	1	0	0	0	0	0	1	0	0	14324	1294	45	4	3154	4	SGK269	15	77472167	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	203	77472167	25059225	1092	167052											
ACSBG1	23205	broad.mit.edu	37	chr15	78485719	78485719	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttgcttgctgtgtatGcattagagggttgccgttga	13	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78485719	C	C	78485719	1	2	214	0	1	0	0	0	0	0	0	0	173	1334	46	4		4	ACSBG1	15	78485719	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1013552	78485719	24045673	1093	167053											
SLC28A1	9154	broad.mit.edu	37	chr15	85438606	85438606	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actcaacagtttcctccattCagggatcccaggccatggag	9	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85438606	T	T	85438606	1	4	214	0	1	0	0	0	0	0	0	0	14645	841	29	4		4	SLC28A1	15	85438606	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6952887	85438606	17092786	1094	167054											
ACAN	176	broad.mit.edu	37	chr15	89386532	89386532	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggatctctctggggatgcAgagcagggggaggggggaga	22	5	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89386532	T	T	89386532	1	4	214	0	1	0	0	0	0	0	0	0	117	203	7	5		5	ACAN	15	89386532	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	3947926	89386532	13144860	1095	167055											
WDR93	56964	broad.mit.edu	37	chr15	90258235	90258235	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggagatatttggctggatgTgtataaattgcccaaggaga	13	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90258235	A	A	90258235	3	1	214	1	0	0	0	0	1	0	0	0	17467	1696	59	5	683	5	WDR93	15	90258235	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	871703	90258235	12273157	1096	167056											
ALDH1A3	220	broad.mit.edu	37	chr15	101434150	101434150	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctccaaagcccctgtgctCtgtcgcagtggaacttcccc	9	17	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101434150	A	A	101434150	1	1	214	0	1	0	0	0	0	0	0	0	492	928	32	3		3	ALDH1A3	15	101434150	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	11175915	101434150	1097242	1097	167057											
STUB1	10273	broad.mit.edu	37	chr16	731479	731479	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcggctgaacttcggggacGacatccccagcgctcttcga	12	14	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	731479	A	A	731479	3	1	214	1	0	0	0	0	1	0	0	0	15453	1058	37	4	410	4	STUB1	16	731479	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08		731479	89623274	1098	167058											
IFT140	9742	broad.mit.edu	37	chr16	1613987	1613987	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctaaactcaaatacaacagGcagagcgtaccgcagggcca	9	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1613987	A	A	1613987	1	1	214	0	1	0	0	0	0	0	0	0	7626	1218	42	4		4	IFT140	16	1613987	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	882508	1613987	88740766	1099	167059											
HAGH	3029	broad.mit.edu	37	chr16	1872291	1872291	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacacccccaggtgagacgCggcacttaccagtggtggtg	13	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1872291	A	A	1872291	1	1	214	0	1	0	0	0	0	0	0	0	7011	783	27	3		3	HAGH	16	1872291	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	258304	1872291	88482462	1100	167060											
ZNF213	7760	broad.mit.edu	37	chr16	3190663	3190663	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccagaaccgcgtgggactGaagaggtcgcctccttcccc	11	17	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3190663	A	A	3190663	1	1	214	0	1	0	0	0	0	0	0	0	17895	1305	45	4		4	ZNF213	16	3190663	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1318372	3190663	87164090	1101	167061											
MEFV	4210	broad.mit.edu	37	chr16	3297003	3297004	+	Intron	INS	-	A	A													gacccaagaaagccgggcccINSaggcacacccacctgcagaa							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3297004	A	A	3297003	6	5	214	0	1	1	1	0	0	0	0	0	9552	609	21	0		0	MEFV	16	3297003	Intron	INS	-	TCGA-75-5126-01A-01D-1753-08	106340	3297003	87057750	1102	167062											
ANKS3	124401	broad.mit.edu	37	chr16	4748910	4748910	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgccagcgggcaatgGcggacgtcatcttcctcttg	13	12	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4748910	C	C	4748910	3	2	214	1	0	0	0	0	1	0	0	0	690	1203	42	4	548	4	ANKS3	16	4748910	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1451907	4748910	85605843	1103	167063											
A2BP1	54715	broad.mit.edu	37	chr16	7383060	7383060	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgcctatgattgtaccgGcagctccttaccttcctgga	10	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7383060	T	T	7383060	1	4	214	0	1	0	0	0	0	0	0	0	3	1203	42	3		3	A2BP1	16	7383060	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2634150	7383060	82971693	1104	167064											
USP7	7874	broad.mit.edu	37	chr16	8991000	8991000	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgctttcaagaaagcataAaaggtctgctaccacaaagg	9	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8991000	T	T	8991000	1	4	214	0	1	0	0	0	0	0	0	0	17215	29	1	5		5	USP7	16	8991000	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	1607940	8991000	81363753	1105	167065											
CLEC16A	23274	broad.mit.edu	37	chr16	11071113	11071113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtaaactgagtgatctgGtggcagagcacctagaccac	14	9	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11071113	T	T	11071113	3	4	214	1	0	0	0	0	1	0	0	0	3532	1261	44	3	786	3	CLEC16A	16	11071113	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2080113	11071113	79283640	1106	167066											
NOMO1	23420	broad.mit.edu	37	chr16	14980810	14980810	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttctctccttttctcccTaaataccactctgcagaaat	3	14	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14980810	C	C	14980810	1	2	214	0	1	0	0	0	0	0	0	0	10626	1537	53	5		5	NOMO1	16	14980810	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	3909697	14980810	75373943	1107	167067											
KIAA0430	9665	broad.mit.edu	37	chr16	15694695	15694695	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tactgccaagaagcatgtttCtctactctctccttagcttt	5	12	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15694695	G	G	15694695	1	3	214	0	1	0	0	0	0	0	0	0	8247	928	32	4		4	KIAA0430	16	15694695	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	713885	15694695	74660058	1108	167068											
GPR139	124274	broad.mit.edu	37	chr16	20043061	20043061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacacctatggaatcacGgggatacttttataggtttt	9	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20043061	T	T	20043061	3	4	214	1	0	0	0	0	1	0	0	0	6713	1116	39	1	7	1	GPR139	16	20043061	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4348366	20043061	70311692	1109	167069											
GP2	2813	broad.mit.edu	37	chr16	20331193	20331193	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatttgcttaaccatgcAgccaccctaccttctgagct	6	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20331193	T	T	20331193	1	4	214	0	1	0	0	0	0	0	0	0	6647	203	7	5		5	GP2	16	20331193	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	288132	20331193	70023560	1110	167070											
UMOD	7369	broad.mit.edu	37	chr16	20359692	20359692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagacaatcaataaggacGcacccccgtcctctgcagtg	9	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20359692	T	T	20359692	1	4	214	0	1	0	0	0	0	0	0	0	17105	1102	38	3		3	UMOD	16	20359692	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	28499	20359692	69995061	1111	167071											
POLR3E	55718	broad.mit.edu	37	chr16	22330212	22330212	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatcgattccgtggctgttCtgcggggcatccagaaggtg	14	11	1	1	rs58061211		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22330212	T	T	22330212	2	4	214	1	0	0	0	0	0	0	0	1	12327	912	32	4		4	POLR3E	16	22330212	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1970520	22330212	68024541	1112	167072											
DCTN5	84516	broad.mit.edu	37	chr16	23678456	23678456	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagtttttgcccctgacGcaagtctagcatctctgcct	8	13	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23678456	T	T	23678456	2	4	214	1	0	0	0	0	0	0	0	1	4343	1074	38	3		3	DCTN5	16	23678456	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1348244	23678456	66676297	1113	167073											
TNRC6A	27327	broad.mit.edu	37	chr16	24801038	24801038	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaatggagggttaaatccaAgcactttgaattcagctagc	9	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24801038	T	T	24801038	3	4	214	1	0	0	0	0	1	0	0	0	16463	72	3	5	1097	5	TNRC6A	16	24801038	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	1122582	24801038	65553715	1114	167074											
SLC5A11	115584	broad.mit.edu	37	chr16	24881343	24881343	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgtaagtattttacctaGggcatagatgacatcttacc	7	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24881343	T	T	24881343	1	4	214	0	1	0	0	0	0	0	0	0	14777	1015	35	2		2	SLC5A11	16	24881343	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	80305	24881343	65473410	1115	167075											
AQP8	343	broad.mit.edu	37	chr16	25235823	25235823	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggctgtatgcatgggtgcCatcaatgagaagacaaaggg	14	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25235823	T	T	25235823	2	4	214	1	0	0	0	0	0	0	0	1	834	581	21	4		4	AQP8	16	25235823	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	354480	25235823	65118930	1116	167076											
GTF3C1	2975	broad.mit.edu	37	chr16	27499680	27499680	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaactgctcttcccagcCagcacagagctcggagccta	8	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27499680	A	A	27499680	3	1	214	1	0	0	0	0	1	0	0	0	6937	594	21	2	2821	2	GTF3C1	16	27499680	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2263857	27499680	62855073	1117	167077											
KIAA0556	23247	broad.mit.edu	37	chr16	27788410	27788410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttggtaattaggccgccGgcaattatcatttgtcgcag	11	9	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27788410	T	T	27788410	1	4	214	0	1	0	0	0	0	0	0	0	8253	1131	39	1		1	KIAA0556	16	27788410	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	288730	27788410	62566343	1118	167078											
RABEP2	79874	broad.mit.edu	37	chr16	28922320	28922320	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgcatctgggttggaggGagggcgaaagtgagggcaag	19	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28922320	A	A	28922320	1	1	214	0	1	0	0	0	0	0	0	0	13070	1189	41	4		4	RABEP2	16	28922320	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1133910	28922320	61432433	1119	167079											
CD19	930	broad.mit.edu	37	chr16	28948593	28948594	+	Missense_Mutation	DNP	CC	AA	AA													cccatccccaaacccccaggCccagaagaagaggaagggga							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	28948594	AA	AA	28948593	3	1	214	1	0	0	0	0	1	0	0	0	3003	753	26	3	1234	3	CD19	16	28948593	Missense_Mutation	DNP	CC	TCGA-75-5126-01A-01D-1753-08	26273	28948593	61406160	1120	167080											
ITGAL	3683	broad.mit.edu	37	chr16	30495338	30495338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctttctgaaccccaaGcccctttctccctggggcca	6	19	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30495338	T	T	30495338	1	4	214	0	1	0	0	0	0	0	0	0	7956	986	34	3		3	ITGAL	16	30495338	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1546745	30495338	59859415	1121	167081											
PRSS53	339105	broad.mit.edu	37	chr16	31095549	31095549	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcataggcagggagcgcggtGaagaccgccggcctggcggg	19	11	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31095549	A	A	31095549	2	1	214	1	0	0	0	0	0	0	0	1	12738	1281	45	4		4	PRSS53	16	31095549	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	600211	31095549	59259204	1122	167082											
ITGAM	3684	broad.mit.edu	37	chr16	31277365	31277365	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctaggcctgtggtcccacCgtgcaccagacttgcagtga	11	15	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31277365	A	A	31277365	2	1	214	1	0	0	0	0	0	0	0	1	7957	639	23	1		1	ITGAM	16	31277365	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	181816	31277365	59077388	1123	167083											
NETO2	81831	broad.mit.edu	37	chr16	47117102	47117102	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcgtacgtacacaccCtaagaattcacatcaccatt	6	13	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47117102	T	T	47117102	1	4	214	0	1	0	0	0	0	0	0	0	10435	696	24	4		4	NETO2	16	47117102	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	15839737	47117102	43237651	1124	167084											
HEATR3	55027	broad.mit.edu	37	chr16	50118314	50118314	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccaggttgtagatggtggtAagatctgagacaaagctgag	14	5	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50118314	T	T	50118314	1	4	214	0	1	0	0	0	0	0	0	0	7096	377	13	5		5	HEATR3	16	50118314	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	3001212	50118314	40236439	1125	167085											
NOD2	64127	broad.mit.edu	37	chr16	50745464	50745464	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggccgcctccccaccctcCtgcacctgggcagactggct	12	19	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50745464	T	T	50745464	2	4	214	1	0	0	0	0	0	0	0	1	10612	680	24	4		4	NOD2	16	50745464	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	627150	50745464	39609289	1126	167086											
RBL2	5934	broad.mit.edu	37	chr16	53487410	53487410	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattctaaaccttcctctgaCcccccttgtatcattgagaa	5	13	3	2	rs140105334		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53487410	T	T	53487410	2	4	214	1	0	0	0	0	0	0	0	1	13218	506	18	4		4	RBL2	16	53487410	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	2741946	53487410	36867343	1127	167087											
OGFOD1	55239	broad.mit.edu	37	chr16	56504618	56504618	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catagtcctcctgagccagaGaataatcagatggccatcag	9	11	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56504618	C	C	56504618	3	2	214	1	0	0	0	0	1	0	0	0	10936	933	33	4	1238	4	OGFOD1	16	56504618	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3017208	56504618	33850135	1128	167088											
SLC12A3	6559	broad.mit.edu	37	chr16	56903835	56903835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaatggtacacccagccgCtcctgtggttccgggagagg	13	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56903835	A	A	56903835	1	1	214	0	1	0	0	0	0	0	0	0	14497	812	28	3		3	SLC12A3	16	56903835	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	399217	56903835	33450918	1129	167089											
CCDC135	84229	broad.mit.edu	37	chr16	57741600	57741600	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actgctgcaaggtgcctaggGagggggagctgggtgggtgt	21	6	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57741600	T	T	57741600	1	4	214	0	1	0	0	0	0	0	0	0	2795	1189	41	3		3	CCDC135	16	57741600	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	837765	57741600	32613153	1130	167090											
CNGB1	1258	broad.mit.edu	37	chr16	57994775	57994775	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggggggctgaggaagcactCtttccagattctgctccagc	13	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57994775	T	T	57994775	3	4	214	1	0	0	0	0	1	0	0	0	3632	913	32	4	3386	4	CNGB1	16	57994775	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	253175	57994775	32359978	1131	167091											
GOT2	2806	broad.mit.edu	37	chr16	58750105	58750105	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgaaagacaaaaatggatctCgtcttctacttctactatct	5	9	5	2	rs149183005	by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58750105	A	A	58750105	1	1	214	0	1	0	0	0	0	0	0	0	6645	899	31	3		3	GOT2	16	58750105	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	755330	58750105	31604648	1132	167092											
CDH11	1009	broad.mit.edu	37	chr16	64981815	64981815	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatactcaggtttgatgtcTttgcgggggataaatccatt	11	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64981815	C	C	64981815	2	2	214	1	0	0	0	0	0	0	0	1	3127	1606	56	5		5	CDH11	16	64981815	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	6231710	64981815	25372938	1133	167093											
ESRP2	80004	broad.mit.edu	37	chr16	68268006	68268006	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	catccccgttcaccagctgtGagaactggggatagggaatg	13	10	1	1	rs12597504		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68268006	C	C	68268006	4	2	214	1	0	0	0	0	0	1	0	0	5301	1294	45	4	1873	4	ESRP2	16	68268006	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3286191	68268006	22086747	1134	167094											
SMPD3	55512	broad.mit.edu	37	chr16	68398640	68398640	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggagacctgagtggggagGagcccggcctcaccagagga	17	11	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68398640	A	A	68398640	1	1	214	0	1	0	0	0	0	0	0	0	14920	1189	41	4		4	SMPD3	16	68398640	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	130634	68398640	21956113	1135	167095											
NFAT5	10725	broad.mit.edu	37	chr16	69724898	69724898	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatattatccctaatgccctGatgactccactcataccaag	4	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69724898	A	A	69724898	2	1	214	1	0	0	0	0	0	0	0	1	10455	1277	45	4		4	NFAT5	16	69724898	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1326258	69724898	20629855	1136	167096											
PHLPP2	23035	broad.mit.edu	37	chr16	71701199	71701199	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttttgcacatgattgtgtcCcagcatcagttttctaagac	8	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71701199	A	A	71701199	4	1	214	1	0	0	0	0	0	1	0	0	11950	632	22	2	2337	2	PHLPP2	16	71701199	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1976301	71701199	18653554	1137	167097											
CNTNAP4	85445	broad.mit.edu	37	chr16	76350405	76350405	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtcctggatttgcaaggCtgaatagaagagatggtaag	14	4	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76350405	A	A	76350405	3	1	214	1	0	0	0	0	1	0	0	0	3681	796	28	3	200	3	CNTNAP4	16	76350405	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4649206	76350405	14004348	1138	167098											
CNTNAP4	85445	broad.mit.edu	37	chr16	76569454	76569454	+	Missense_Mutation	SNP	C	T	T													ccttttaggtggaacggccaCcagacagagaggctttctgg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76569454	T	T	76569454	3	4	214	1	0	0	0	0	1	0	0	0	3681	507	18	4	2851	4	CNTNAP4	16	76569454	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	219049	76569454	13785299	1139	167099	703	2									
CNTNAP4	85445	broad.mit.edu	37	chr16	76569461	76569461	+	Missense_Mutation	SNP	G	T	T													ggtggaacggccaccagacaGagaggctttctgggctgcat							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76569461	T	T	76569461	3	4	214	1	0	0	0	0	1	0	0	0	3681	933	33	3	2858	3	CNTNAP4	16	76569461	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	7	76569461	13785292	1140	167100	703	2									
ADAMTS18	170692	broad.mit.edu	37	chr16	77398297	77398297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctacgatgaacagaagagCatttggaagggatattagag	12	4	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77398297	A	A	77398297	1	1	214	0	1	0	0	0	0	0	0	0	263	725	25	3		3	ADAMTS18	16	77398297	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	828836	77398297	12956456	1141	167101											
VAT1L	57687	broad.mit.edu	37	chr16	77913212	77913212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttgtttgttttgagacAgcgtctcgttctgtcaccag	10	8	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77913212	G	G	77913212	1	3	214	0	1	0	0	0	0	0	0	0	17257	203	7	5		5	VAT1L	16	77913212	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	514915	77913212	12441541	1142	167102											
WWOX	51741	broad.mit.edu	37	chr16	78389540	78389540	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagaaacgaccgagagcttCgaggcagattacatacttat	10	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78389540	T	T	78389540	1	4	214	0	1	0	0	0	0	0	0	0	17541	899	31	4		4	WWOX	16	78389540	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	476328	78389540	11965213	1143	167103											
CENPN	55839	broad.mit.edu	37	chr16	81053854	81053854	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcacgtcctcctccatgctGaggcgcaatacaccgcttct	7	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81053854	C	C	81053854	2	2	214	1	0	0	0	0	0	0	0	1	3268	1277	45	4		4	CENPN	16	81053854	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2664314	81053854	9300899	1144	167104											
FANCA	2175	broad.mit.edu	37	chr16	89862398	89862398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtggaaattacactgcCaagcgtgtgtccactgaaca	9	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89862398	A	A	89862398	3	1	214	1	0	0	0	0	1	0	0	0	5719	594	21	2	3577	2	FANCA	16	89862398	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	8808544	89862398	492355	1145	167105											
ARRB2	409	broad.mit.edu	37	chr17	4621896	4621896	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagctgcctgaccccgtcCcaccccacagtgagacagta	9	17	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4621896	T	T	4621896	1	4	214	0	1	0	0	0	0	0	0	0	985	638	22	4		4	ARRB2	17	4621896	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08		4621896	76573314	1146	167106											
PLD2	5338	broad.mit.edu	37	chr17	4712637	4712637	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtctcttgaccatgtctttCtatcgcaactaccatgccat	5	14	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4712637	G	G	4712637	3	3	214	1	0	0	0	0	1	0	0	0	12141	912	32	4	552	4	PLD2	17	4712637	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	90741	4712637	76482573	1147	167107											
ZNF594	84622	broad.mit.edu	37	chr17	5085607	5085607	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actacattcatagggtttctCtccagtatgaatacgatggt	8	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5085607	A	A	5085607	4	1	214	1	0	0	0	0	0	1	0	0	18151	922	32	3	482	3	ZNF594	17	5085607	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	372970	5085607	76109603	1148	167108											
PHF23	79142	broad.mit.edu	37	chr17	7138841	7138841	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cccttgagaattcctgccttGaagtgcagacagtatccaag	9	11	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7138841	A	A	7138841	1	1	214	0	1	0	0	0	0	0	0	0	11930	1305	45	4		4	PHF23	17	7138841	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	2053234	7138841	74056369	1149	167109											
NLGN2	57555	broad.mit.edu	37	chr17	7321156	7321156	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcctccccggccctccctGgcccggccactccgaaggca	9	23	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7321156	C	C	7321156	1	2	214	0	1	0	0	0	0	0	0	0	10557	1363	47	4		4	NLGN2	17	7321156	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	182315	7321156	73874054	1150	167110											
DNAH2	146754	broad.mit.edu	37	chr17	7736529	7736529	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgcagagagccgcaagaaGagcgccaagggtgggacagc	16	11	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7736529	A	A	7736529	2	1	214	1	0	0	0	0	0	0	0	1	4642	933	33	4		4	DNAH2	17	7736529	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	415373	7736529	73458681	1151	167111											
CHD3	1107	broad.mit.edu	37	chr17	7797526	7797526	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctcaggccggcctgatGgccctgtccgcaccaagaaa	12	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7797526	T	T	7797526	3	4	214	1	0	0	0	0	1	0	0	0	3357	1348	47	2	1325	2	CHD3	17	7797526	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	60997	7797526	73397684	1152	167112											
MYH8	4626	broad.mit.edu	37	chr17	10304093	10304093	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccccagctcctcaatgcGggcctgggaatgaaagaagc	11	13	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10304093	A	A	10304093	3	1	214	1	0	0	0	0	1	0	0	0	10135	1116	39	4	2520	4	MYH8	17	10304093	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2506567	10304093	70891117	1153	167113											
MYH8	4626	broad.mit.edu	37	chr17	10317485	10317485	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccatacataatggatttTtaaaattagtgtttttgact	5	4	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10317485	C	C	10317485	1	2	214	0	1	0	0	0	0	0	0	0	10135	1856	64	5		5	MYH8	17	10317485	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	13392	10317485	70877725	1154	167114											
MYH1	4619	broad.mit.edu	37	chr17	10398693	10398693	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agagaaaaattaggaaacctCatgttctaatgaaccataaa	6	6	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10398693	A	A	10398693	1	1	214	0	1	0	0	0	0	0	0	0	10123	841	29	3		3	MYH1	17	10398693	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	81208	10398693	70796517	1155	167115											
MYH2	4620	broad.mit.edu	37	chr17	10435284	10435284	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcagtgagagttggaggttCtgcttcaccttgttcctact	12	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10435284	T	T	10435284	1	4	214	0	1	0	0	0	0	0	0	0	10129	928	32	4		4	MYH2	17	10435284	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	36591	10435284	70759926	1156	167116											
DNAH9	1770	broad.mit.edu	37	chr17	11642265	11642265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttggggaggagatcagCctgaatccttctgtcggtat	12	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11642265	A	A	11642265	3	1	214	1	0	0	0	0	1	0	0	0	4648	738	26	3	5997	3	DNAH9	17	11642265	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1206981	11642265	69552945	1157	167117											
CDRT1	374286	broad.mit.edu	37	chr17	15502019	15502019	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcctgagggcccaaaggatCatactgcgtagaacccatgt	10	11	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15502019	A	A	15502019	1	1	214	0	1	0	0	0	0	0	0	0	3204	841	29	3		3	CDRT1	17	15502019	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3859754	15502019	65693191	1158	167118											
RAI1	10743	broad.mit.edu	37	chr17	17701750	17701750	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcatgaggcctgtgccGtgtggaccggcggcgtctac	18	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17701750	T	T	17701750	3	4	214	1	0	0	0	0	1	0	0	0	13115	1145	40	3	5490	3	RAI1	17	17701750	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2199731	17701750	63493460	1159	167119											
SHMT1	6470	broad.mit.edu	37	chr17	18239033	18239033	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggatcataggggctgtccCctctttttctttttaggctc	10	10	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18239033	T	T	18239033	1	4	214	0	1	0	0	0	0	0	0	0	14398	638	22	4		4	SHMT1	17	18239033	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	537283	18239033	62956177	1160	167120											
LGALS9C	654346	broad.mit.edu	37	chr17	18391147	18391147	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgcttaggcccagctgGggggacccaagccaatctcc	13	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18391147	T	T	18391147	1	4	214	0	1	0	0	0	0	0	0	0	8822	1247	43	2		2	LGALS9C	17	18391147	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	152114	18391147	62804063	1161	167121											
CYTSB	92521	broad.mit.edu	37	chr17	20015207	20015207	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttgctgtatgtggaacttTatctgatttgctttctgtgg	12	5	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20015207	C	C	20015207	1	2	214	0	1	0	0	0	0	0	0	0	4243	1769	61	5		5	CYTSB	17	20015207	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1624060	20015207	61180003	1162	167122											
SGK494	124923	broad.mit.edu	37	chr17	26938471	26938471	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caccaatcagcagcatggttGtaaggtcctccacttaggac	9	12	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26938471	C	C	26938471	1	2	214	0	1	0	0	0	0	0	0	0	14326	1372	48	4		4	SGK494	17	26938471	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	6923264	26938471	54256739	1163	167123											
RPL23A	6147	broad.mit.edu	37	chr17	27050632	27050632	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttcgactggctcctgatTacgatgctttggatgttgcc	11	9	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27050632	G	G	27050632	3	3	214	1	0	0	0	0	1	0	0	0	13682	1754	61	5	444	5	RPL23A	17	27050632	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	112161	27050632	54144578	1164	167124											
CPD	1362	broad.mit.edu	37	chr17	28773009	28773009	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctgagaggacttgtaatGaactatccacatattacaaa	6	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28773009	A	A	28773009	3	1	214	1	0	0	0	0	1	0	0	0	3830	1290	45	4	2890	4	CPD	17	28773009	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1722377	28773009	52422201	1165	167125											
ATAD5	79915	broad.mit.edu	37	chr17	29206476	29206476	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taatgtttgatggctgctttGaagaaatcaagttcagtact	9	5	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29206476	C	C	29206476	3	2	214	1	0	0	0	0	1	0	0	0	1080	1291	45	4	4118	4	ATAD5	17	29206476	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	433467	29206476	51988734	1166	167126											
EVI2B	2124	broad.mit.edu	37	chr17	29632338	29632338	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcaagtggttgtccagcaGaagtatgtgcttctggtttt	13	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29632338	A	A	29632338	3	1	214	1	0	0	0	0	1	0	0	0	5330	942	33	4	1060	4	EVI2B	17	29632338	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	425862	29632338	51562872	1167	167127											
LRRC37B	114659	broad.mit.edu	37	chr17	30348281	30348281	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacccgctccagctgacctCtaaccccctggggccacctg	10	19	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30348281	G	G	30348281	3	3	214	1	0	0	0	0	1	0	0	0	9081	913	32	4	118	4	LRRC37B	17	30348281	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	715943	30348281	50846929	1168	167128											
TMEM132E	124842	broad.mit.edu	37	chr17	32965202	32965202	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccccacgcggcccactgCacccccggacctgcacaatt	10	20	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32965202	A	A	32965202	3	1	214	1	0	0	0	0	1	0	0	0	16171	710	25	3	2944	3	TMEM132E	17	32965202	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2616921	32965202	48230008	1169	167129											
SLFN5	162394	broad.mit.edu	37	chr17	33591742	33591742	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaacctactgacaaataaacAgtatgagttgctttcaaaga	7	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33591742	T	T	33591742	3	4	214	1	0	0	0	0	1	0	0	0	14851	188	7	5	1689	5	SLFN5	17	33591742	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	626540	33591742	47603468	1170	167130											
SLFN11	91607	broad.mit.edu	37	chr17	33679766	33679766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtaaggttccctgaacaCcctgggaccattcggcttca	9	13	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33679766	A	A	33679766	3	1	214	1	0	0	0	0	1	0	0	0	14847	507	18	3	394	3	SLFN11	17	33679766	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	88024	33679766	47515444	1171	167131											
CCL14	6358	broad.mit.edu	37	chr17	34310985	34310985	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggccggaagagacagcCcatcttccctccctcctaaa	8	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34310985	A	A	34310985	1	1	214	0	1	0	0	0	0	0	0	0	2913	638	22	2		2	CCL14	17	34310985	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	631219	34310985	46884225	1172	167132											
PIGW	284098	broad.mit.edu	37	chr17	34894341	34894341	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaactggcctgatcaaccTgatggtagatacattacaca	7	10	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34894341	C	C	34894341	3	2	214	1	0	0	0	0	1	0	0	0	11997	1580	55	5	1393	5	PIGW	17	34894341	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	583356	34894341	46300869	1173	167133											
GGNBP2	79893	broad.mit.edu	37	chr17	34934557	34934557	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacgacacatacatgtttgCtgtgaaacagacttcattgc	8	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34934557	T	T	34934557	2	4	214	1	0	0	0	0	0	0	0	1	6423	805	28	4		4	GGNBP2	17	34934557	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	40216	34934557	46260653	1174	167134											
ACACA	31	broad.mit.edu	37	chr17	35506835	35506835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaagtgagaattctcaaCctggatggttctctgtccca	8	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35506835	A	A	35506835	3	1	214	1	0	0	0	0	1	0	0	0	106	507	18	3	1567	3	ACACA	17	35506835	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	572278	35506835	45688375	1175	167135											
WNK4	65266	broad.mit.edu	37	chr17	40948569	40948569	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcgggcaagcaagggggtGacattcgccggggatgttgg	19	8	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40948569	C	C	40948569	2	2	214	1	0	0	0	0	0	0	0	1	17507	1277	45	4		4	WNK4	17	40948569	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	5441734	40948569	40246641	1176	167136											
ITGA2B	3674	broad.mit.edu	37	chr17	42466541	42466541	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcaacctgaataggcccCacaagtcaccttgctcaact	5	14	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42466541	A	A	42466541	1	1	214	0	1	0	0	0	0	0	0	0	7946	609	21	2		2	ITGA2B	17	42466541	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1517972	42466541	38728669	1177	167137											
GPATCH8	23131	broad.mit.edu	37	chr17	42475265	42475265	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggggatgggggtgagggtGaatgccgatggcggcagcag	22	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42475265	C	C	42475265	3	2	214	1	0	0	0	0	1	0	0	0	6659	1290	45	4	332	4	GPATCH8	17	42475265	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	8724	42475265	38719945	1178	167138											
GPATCH8	23131	broad.mit.edu	37	chr17	42475368	42475368	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtagctggctgctgaatgtgGatgggttgcagggctggtgt	19	5	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42475368	C	C	42475368	3	2	214	1	0	0	0	0	1	0	0	0	6659	1164	41	4	435	4	GPATCH8	17	42475368	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	103	42475368	38719842	1179	167139											
FMNL1	752	broad.mit.edu	37	chr17	43322570	43322570	+	Intron	DEL	G	-	-													acagtatataattggtgggaGggctgcctctccgattcact							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43322570	-	-	43322570	6	5	214	0	1	1	0	1	0	0	0	0	6009	1015	35	0		0	FMNL1	17	43322570	Intron	DEL	G	TCGA-75-5126-01A-01D-1753-08	847202	43322570	37872640	1180	167140											
MAPT	4137	broad.mit.edu	37	chr17	44067477	44067477	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaaaagaaccaggctgctCtgctgtggtttgcaaatgtg	12	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44067477	T	T	44067477	1	4	214	0	1	0	0	0	0	0	0	0	9389	928	32	4		4	MAPT	17	44067477	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	744907	44067477	37127733	1181	167141											
PNPO	55163	broad.mit.edu	37	chr17	46023907	46023907	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttcaagaggccctgggatGaggggtgagggtgggagagt	20	6	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46023907	T	T	46023907	1	4	214	0	1	0	0	0	0	0	0	0	12267	1305	45	3		3	PNPO	17	46023907	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1956430	46023907	35171303	1182	167142											
LRRC59	55379	broad.mit.edu	37	chr17	48462737	48462737	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgattaaaagtacagattCtgccacctttaccctggtgc	8	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48462737	T	T	48462737	1	4	214	0	1	0	0	0	0	0	0	0	9102	928	32	4		4	LRRC59	17	48462737	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2438830	48462737	32732473	1183	167143											
CACNA1G	8913	broad.mit.edu	37	chr17	48695521	48695521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagggtggaggagccagGgctggagaccagggggctcc	23	8	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48695521	T	T	48695521	1	4	214	0	1	0	0	0	0	0	0	0	2570	1247	43	2		2	CACNA1G	17	48695521	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	232784	48695521	32499689	1184	167144											
TMEM100	55273	broad.mit.edu	37	chr17	53797959	53797959	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcccaccatggttctGggtgaattgggtgacaaagt	11	9	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53797959	T	T	53797959	1	4	214	0	1	0	0	0	0	0	0	0	16138	1363	47	2		2	TMEM100	17	53797959	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	5102438	53797959	27397251	1185	167145											
ANKFN1	162282	broad.mit.edu	37	chr17	54517825	54517825	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatttccctattgctgAtatttgtgctgggatatcag	8	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54517825	G	G	54517825	1	3	214	0	1	0	0	0	0	0	0	0	625	348	12	5		5	ANKFN1	17	54517825	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	719866	54517825	26677385	1186	167146											
ANKFN1	162282	broad.mit.edu	37	chr17	54517845	54517845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atatttgtgctgggatatcaGtagcaaatgtctattctgaa	9	5	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54517845	T	T	54517845	1	4	214	0	1	0	0	0	0	0	0	0	625	1044	36	3		3	ANKFN1	17	54517845	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	20	54517845	26677365	1187	167147											
OR4D2	124538	broad.mit.edu	37	chr17	56247937	56247937	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagggagacaccggctggtTtgagagtgacaatggtaggt	16	5	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56247937	A	A	56247937	2	1	214	1	0	0	0	0	0	0	0	1	11150	1828	64	5		5	OR4D2	17	56247937	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	1730092	56247937	24947273	1188	167148											
BZRAP1	9256	broad.mit.edu	37	chr17	56393883	56393883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctgcctccagctcctctaCctcactggctgtgtccacct	7	18	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56393883	A	A	56393883	3	1	214	1	0	0	0	0	1	0	0	0	1587	507	18	3	3750	3	BZRAP1	17	56393883	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	145946	56393883	24801327	1189	167149											
C17orf47	284083	broad.mit.edu	37	chr17	56619364	56619364	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatggttgcttttcttctctCtgtgggatgcacatcccact	9	11	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56619364	G	G	56619364	1	3	214	0	1	0	0	0	0	0	0	0	1874	928	32	4		4	C17orf47	17	56619364	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	225481	56619364	24575846	1190	167150											
APPBP2	10513	broad.mit.edu	37	chr17	58524943	58524943	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttaactgaggtcctccctCagcagctcggtccctcgaca	10	15	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58524943	T	T	58524943	2	4	214	1	0	0	0	0	0	0	0	1	818	837	29	4		4	APPBP2	17	58524943	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1905579	58524943	22670267	1191	167151											
APPBP2	10513	broad.mit.edu	37	chr17	58524966	58524966	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagctcggtccctcgacattCtgagaaatcaggaaggactg	11	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58524966	G	G	58524966	3	3	214	1	0	0	0	0	1	0	0	0	818	912	32	4	27	4	APPBP2	17	58524966	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	23	58524966	22670244	1192	167152											
BCAS3	54828	broad.mit.edu	37	chr17	58804729	58804729	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgcttccgatcatagcGcctctttccctgggcataca	7	15	3	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58804729	T	T	58804729	1	4	214	0	1	0	0	0	0	0	0	0	1357	1102	38	3		3	BCAS3	17	58804729	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	279763	58804729	22390481	1193	167153											
TBX4	9496	broad.mit.edu	37	chr17	59543393	59543393	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggggatttcttagctacCtgagtgactgcccaggtctg	13	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59543393	T	T	59543393	1	4	214	0	1	0	0	0	0	0	0	0	15782	696	24	4		4	TBX4	17	59543393	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	738664	59543393	21651817	1194	167154											
TLK2	11011	broad.mit.edu	37	chr17	60600389	60600389	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacaagtaaagctgacactTgggtttatagcaatgtatgt	9	5	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60600389	G	G	60600389	1	3	214	0	1	0	0	0	0	0	0	0	16067	1827	63	5		5	TLK2	17	60600389	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1056996	60600389	20594821	1195	167155											
KCNH6	81033	broad.mit.edu	37	chr17	61607429	61607429	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccttcagggcccacccccCatcctcccaatggtgttcgc	7	21	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61607429	A	A	61607429	1	1	214	0	1	0	0	0	0	0	0	0	8106	609	21	2		2	KCNH6	17	61607429	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1007040	61607429	19587781	1196	167156											
TEX2	55852	broad.mit.edu	37	chr17	62228151	62228151	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcagaacctcggctaaacCcagagcttctatacttggtg	9	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62228151	T	T	62228151	1	4	214	0	1	0	0	0	0	0	0	0	15903	638	22	4		4	TEX2	17	62228151	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	620722	62228151	18967059	1197	167157											
CCDC46	201134	broad.mit.edu	37	chr17	63898446	63898446	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatgctccagcttcagctCtactatctgattggacaatg	7	11	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63898446	A	A	63898446	4	1	214	1	0	0	0	0	0	1	0	0	2845	922	32	3	1078	3	CCDC46	17	63898446	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1670295	63898446	17296764	1198	167158											
ABCA10	10349	broad.mit.edu	37	chr17	67148553	67148553	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtcacacacagcctcagcCtctgacatgtaatgggtggt	11	12	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67148553	A	A	67148553	3	1	214	1	0	0	0	0	1	0	0	0	29	680	24	2	445	2	ABCA10	17	67148553	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3250107	67148553	14046657	1199	167159											
FAM104A	84923	broad.mit.edu	37	chr17	71223366	71223366	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttttggtctgggggggaaGatggttgtcttcttcgttgc	15	6	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71223366	T	T	71223366	3	4	214	1	0	0	0	0	1	0	0	0	5431	942	33	3	376	3	FAM104A	17	71223366	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4074813	71223366	9971844	1200	167160											
H3F3B	3021	broad.mit.edu	37	chr17	73775080	73775080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagtgagcggacgctgcCgcacaaagccggccaccgcc	15	15	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73775080	A	A	73775080	1	1	214	0	1	0	0	0	0	0	0	0	7000	667	23	1		1	H3F3B	17	73775080	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2551714	73775080	7420130	1201	167161											
QRICH2	84074	broad.mit.edu	37	chr17	74286109	74286109	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caaacttctttggctagcgtCtttacggtcttcagctgctc	8	12	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74286109	G	G	74286109	3	3	214	1	0	0	0	0	1	0	0	0	12988	912	32	4	1787	4	QRICH2	17	74286109	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	511029	74286109	6909101	1202	167162											
CCDC40	55036	broad.mit.edu	37	chr17	78022479	78022479	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaccgaggagggggccatGgcagagagagtggagtccga	19	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78022479	T	T	78022479	3	4	214	1	0	0	0	0	1	0	0	0	2839	1348	47	2	792	2	CCDC40	17	78022479	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	3736370	78022479	3172731	1203	167163											
EIF4A3	9775	broad.mit.edu	37	chr17	78111831	78111831	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaacacataccctgaaagCttaaaatatggacaaactgg	8	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78111831	T	T	78111831	1	4	214	0	1	0	0	0	0	0	0	0	5068	812	28	4		4	EIF4A3	17	78111831	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	89352	78111831	3083379	1204	167164											
SIRT7	51547	broad.mit.edu	37	chr17	79872368	79872369	+	Missense_Mutation	DNP	CC	AA	AA													cgctccgtcacatcgaacacCcgcacgtactccctgttggg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	79872369	AA	AA	79872368	3	1	214	1	0	0	0	0	1	0	0	0	14456	610	22	2	600	2	SIRT7	17	79872368	Missense_Mutation	DNP	CC	TCGA-75-5126-01A-01D-1753-08	1760537	79872368	1322842	1205	167165											
CLUL1	27098	broad.mit.edu	37	chr18	627251	627251	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgactgtggatgtgaattCtctctttaacaggagtttta	10	5	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	627251	T	T	627251	3	4	214	1	0	0	0	0	1	0	0	0	3602	913	32	4	592	4	CLUL1	18	627251	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08		627251	77449997	1206	167166											
SMCHD1	23347	broad.mit.edu	37	chr18	2707922	2707922	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagttattttacattgtaAgtatacaaactaatttagat	4	4	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2707922	T	T	2707922	1	4	214	0	1	0	0	0	0	0	0	0	14902	87	3	5		5	SMCHD1	18	2707922	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	2080671	2707922	75369326	1207	167167											
MYOM1	8736	broad.mit.edu	37	chr18	3116307	3116307	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agcagttagtagaggaagctCtagaactgagcagcctctta	11	8	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3116307	G	G	3116307	1	3	214	0	1	0	0	0	0	0	0	0	10185	928	32	4		4	MYOM1	18	3116307	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	408385	3116307	74960941	1208	167168											
KIAA0802	23255	broad.mit.edu	37	chr18	8785985	8785985	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgggccggcccgaggggacGagcgggagagcctgcgcctc	19	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8785985	T	T	8785985	4	4	214	1	0	0	0	0	0	1	0	0	8264	1059	37	3	1801	3	KIAA0802	18	8785985	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5669678	8785985	69291263	1209	167169											
MC2R	4158	broad.mit.edu	37	chr18	13884563	13884563	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcatttgttggaatgttAcactattctggcacttggca	10	8	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13884563	G	G	13884563	1	3	214	0	1	0	0	0	0	0	0	0	9457	406	14	5		5	MC2R	18	13884563	3'UTR	SNP	A	TCGA-75-5126-01A-01D-1753-08	5098578	13884563	64192685	1210	167170											
HRH4	59340	broad.mit.edu	37	chr18	22057268	22057269	+	Missense_Mutation	DNP	GG	TT	TT													aggagattagccaagtcactGgccattctcttaggggtttt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	22057269	TT	TT	22057268	3	4	214	1	0	0	0	0	1	0	0	0	7425	1335	47	2	925	2	HRH4	18	22057268	Missense_Mutation	DNP	GG	TCGA-75-5126-01A-01D-1753-08	8172705	22057268	56019980	1211	167171											
CDH2	1000	broad.mit.edu	37	chr18	25616605	25616605	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agcagggataaagttcttttGagctgacggaaatgccgatg	13	6	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25616605	C	C	25616605	1	2	214	0	1	0	0	0	0	0	0	0	3135	1305	45	4		4	CDH2	18	25616605	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	3559337	25616605	52460643	1212	167172											
DSG1	1828	broad.mit.edu	37	chr18	28923407	28923407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtattactatccctccacCaccagtggtcccatttttga	5	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28923407	A	A	28923407	1	1	214	0	1	0	0	0	0	0	0	0	4816	609	21	2		2	DSG1	18	28923407	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3306802	28923407	49153841	1213	167173											
DTNA	1837	broad.mit.edu	37	chr18	32457821	32457821	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctcatcatggagggatccAtaagtgctaggggtctctct	12	9	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32457821	T	T	32457821	1	4	214	0	1	0	0	0	0	0	0	0	4828	232	8	5		5	DTNA	18	32457821	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	3534414	32457821	45619427	1214	167174											
FHOD3	80206	broad.mit.edu	37	chr18	34266982	34266982	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaccattttacatttctgagGcagtgccagtctttcatgat	7	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34266982	C	C	34266982	1	2	214	0	1	0	0	0	0	0	0	0	5940	1218	42	4		4	FHOD3	18	34266982	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1809161	34266982	43810266	1215	167175											
FHOD3	80206	broad.mit.edu	37	chr18	34335151	34335151	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gaagtgaacataaacaaattCtgcaggattattagtgaatt	8	4	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34335151	G	G	34335151	3	3	214	1	0	0	0	0	1	0	0	0	5940	912	32	4	3863	4	FHOD3	18	34335151	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	68169	34335151	43742097	1216	167176											
C18orf10	25941	broad.mit.edu	37	chr18	34378463	34378463	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcatattgccactggggCaggcccaggtgggtgatgag	17	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34378463	A	A	34378463	2	1	214	1	0	0	0	0	0	0	0	1	1913	697	25	3		3	C18orf10	18	34378463	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	43312	34378463	43698785	1217	167177											
RIT2	6014	broad.mit.edu	37	chr18	40554006	40554006	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctaaagcataaaataaactCagagattggagaggtttaag	10	4	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40554006	G	G	40554006	1	3	214	0	1	0	0	0	0	0	0	0	13498	841	29	4		4	RIT2	18	40554006	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6175543	40554006	37523242	1218	167178											
SYT4	6860	broad.mit.edu	37	chr18	40854188	40854188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccaaacttctttttgCtatttaggttttcagggtaa	7	8	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40854188	A	A	40854188	3	1	214	1	0	0	0	0	1	0	0	0	15595	797	28	3	1083	3	SYT4	18	40854188	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	300182	40854188	37223060	1219	167179											
SETBP1	26040	broad.mit.edu	37	chr18	42533253	42533253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaaaaggacatccaagcCttcaagatgaaccgcaagga	11	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42533253	A	A	42533253	2	1	214	1	0	0	0	0	0	0	0	1	14242	668	24	2		2	SETBP1	18	42533253	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1679065	42533253	35543995	1220	167180											
MBD2	8932	broad.mit.edu	37	chr18	51729159	51729159	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaatattaagtacctacCgtgtgcaaaagcaaaaaaag	7	7	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51729159	A	A	51729159	1	1	214	0	1	0	0	0	0	0	0	0	9435	667	23	1		1	MBD2	18	51729159	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	9195906	51729159	26348089	1221	167181											
WDR7	23335	broad.mit.edu	37	chr18	54358458	54358458	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgcaggtgttcgatgcCggagactattccttgttgtg	12	9	0	1	rs143311376		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54358458	T	T	54358458	2	4	214	1	0	0	0	0	0	0	0	1	17447	639	23	4		4	WDR7	18	54358458	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	2629299	54358458	23718790	1222	167182											
CDH20	28316	broad.mit.edu	37	chr18	59221445	59221445	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgttgctcattttgtcCatgaggcggcaccggaaaca	12	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59221445	A	A	59221445	2	1	214	1	0	0	0	0	0	0	0	1	3136	581	21	2		2	CDH20	18	59221445	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	4862987	59221445	18855803	1223	167183											
CDH7	1005	broad.mit.edu	37	chr18	63489352	63489352	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccttccaaacatggatagaGaggctaaagaccagtatttg	9	9	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63489352	C	C	63489352	3	2	214	1	0	0	0	0	1	0	0	0	3145	943	33	4	675	4	CDH7	18	63489352	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4267907	63489352	14587896	1224	167184											
SHC2	25759	broad.mit.edu	37	chr19	430632	430632	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agccagcacaggacagggctGaggagccccagaatcctcgt	13	13	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	430632	A	A	430632	1	1	214	0	1	0	0	0	0	0	0	0	14384	1305	45	4		4	SHC2	19	430632	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08		430632	58698351	1225	167185											
REEP6	92840	broad.mit.edu	37	chr19	1495329	1495329	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcctgtatctgctgttcgGctacggagcgtctctgctgt	12	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1495329	T	T	1495329	3	4	214	1	0	0	0	0	1	0	0	0	13317	1203	42	3	158	3	REEP6	19	1495329	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1064697	1495329	57633654	1226	167186											
PIP5K1C	23396	broad.mit.edu	37	chr19	3638834	3638834	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acggtggagcgtgtgtgagaGagagtccggttgacgagccg	19	7	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3638834	T	T	3638834	1	4	214	0	1	0	0	0	0	0	0	0	12036	957	33	3		3	PIP5K1C	19	3638834	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2143505	3638834	55490149	1227	167187											
SAFB2	9667	broad.mit.edu	37	chr19	5592837	5592837	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggtctggccggggaaagtCtgcacgatatcggtcctcca	14	11	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5592837	G	G	5592837	3	3	214	1	0	0	0	0	1	0	0	0	13918	913	32	4	616	4	SAFB2	19	5592837	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	1954003	5592837	53536146	1228	167188											
SAFB	6294	broad.mit.edu	37	chr19	5647925	5647925	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtttgtgagtttccctccCtggatttttaaaattccctc	7	10	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5647925	G	G	5647925	1	3	214	0	1	0	0	0	0	0	0	0	13917	696	24	4		4	SAFB	19	5647925	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	55088	5647925	53481058	1229	167189											
MLLT1	4298	broad.mit.edu	37	chr19	6222228	6222228	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcggccttcaccttctcCcctctggtgctgctcttgtc	7	18	5	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6222228	A	A	6222228	2	1	214	1	0	0	0	0	0	0	0	1	9718	610	22	2		2	MLLT1	19	6222228	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	574303	6222228	52906755	1230	167190											
SH2D3A	10045	broad.mit.edu	37	chr19	6754663	6754663	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctcaagtggtgtccatggGgaagagtgagcagctccagg	15	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6754663	C	C	6754663	3	2	214	1	0	0	0	0	1	0	0	0	14346	1232	43	4	689	4	SH2D3A	19	6754663	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	532435	6754663	52374320	1231	167191											
VAV1	7409	broad.mit.edu	37	chr19	6773091	6773091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccggggctgacagtcgagGggctgacgtgctgctccacc	15	15	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6773091	T	T	6773091	1	4	214	0	1	0	0	0	0	0	0	0	17258	1247	43	2		2	VAV1	19	6773091	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	18428	6773091	52355892	1232	167192											
EMR1	2015	broad.mit.edu	37	chr19	6903852	6903852	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcactgaaatgtgccccatCaattcaacatgcaccaacac	5	14	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6903852	T	T	6903852	2	4	214	1	0	0	0	0	0	0	0	1	5146	816	29	4		4	EMR1	19	6903852	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	130761	6903852	52225131	1233	167193											
CLEC4M	10332	broad.mit.edu	37	chr19	7830240	7830240	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagtggccaggtctgggaggGaggtgggactgagagccaag	21	6	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7830240	C	C	7830240	1	2	214	0	1	0	0	0	0	0	0	0	3550	1189	41	4		4	CLEC4M	19	7830240	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	926388	7830240	51298743	1234	167194											
MUC16	94025	broad.mit.edu	37	chr19	8997117	8997118	+	Splice_Site	DNP	CC	AA	AA													ttggcaattctaaggtctcaCctgagcaaagtcagtctgca							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	8997118	AA	AA	8997117	5	1	214	1	0	0	0	0	0	0	1	0	10067	521	18	3	2544	3	MUC16	19	8997117	Splice_Site	DNP	CC	TCGA-75-5126-01A-01D-1753-08	1166877	8997117	50131866	1235	167195											
MUC16	94025	broad.mit.edu	37	chr19	9060907	9060907	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggctagttttttccaCtgatgggcggcttggccatg	15	8	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9060907	A	A	9060907	3	1	214	1	0	0	0	0	1	0	0	0	10067	565	20	3	17312	3	MUC16	19	9060907	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	63790	9060907	50068076	1236	167196											
MUC16	94025	broad.mit.edu	37	chr19	9070227	9070227	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtggctttggatgtgtgtGaatcagctgggacagaagat	15	4	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9070227	C	C	9070227	4	2	214	1	0	0	0	0	0	1	0	0	10067	1294	45	4	26632	4	MUC16	19	9070227	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	9320	9070227	50058756	1237	167197											
MUC16	94025	broad.mit.edu	37	chr19	9074029	9074029	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagaggatgtatgttgccCttgtaacgtggaagtggcag	16	5	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9074029	T	T	9074029	3	4	214	1	0	0	0	0	1	0	0	0	10067	681	24	4	30434	4	MUC16	19	9074029	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3802	9074029	50054954	1238	167198											
MUC16	94025	broad.mit.edu	37	chr19	9090985	9090985	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggcgcactggtacttattCtgctgtgtcctgcagagcca	11	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9090985	A	A	9090985	3	1	214	1	0	0	0	0	1	0	0	0	10067	913	32	3	43029	3	MUC16	19	9090985	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	16956	9090985	50037998	1239	167199											
OR1M1	125963	broad.mit.edu	37	chr19	9204347	9204347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctacgcctctgtcgcCtgctggtcggcgccctctgg	13	16	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9204347	A	A	9204347	3	1	214	1	0	0	0	0	1	0	0	0	11062	680	24	2	429	2	OR1M1	19	9204347	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	113362	9204347	49924636	1240	167200											
OR7G1	125962	broad.mit.edu	37	chr19	9225412	9225412	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaaaaaaaaaagtaaatctCgatgcaagagtcaggcactc	7	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9225412	T	T	9225412	1	4	214	0	1	0	0	0	0	0	0	0	11316	899	31	4		4	OR7G1	19	9225412	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	21065	9225412	49903571	1241	167201											
S1PR5	53637	broad.mit.edu	37	chr19	10625652	10625652	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taatgcaggacgatgacctcGctcaccggcgccggccgcag	13	15	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10625652	A	A	10625652	2	1	214	1	0	0	0	0	0	0	0	1	13908	1078	38	4		4	S1PR5	19	10625652	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1400240	10625652	48503331	1242	167202											
ZNF700	90592	broad.mit.edu	37	chr19	12060182	12060182	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaaaccctatgaatGtaaggaatgtgggaaagcct	13	5	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12060182	A	A	12060182	3	1	214	1	0	0	0	0	1	0	0	0	18231	1377	48	4	1357	4	ZNF700	19	12060182	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1434530	12060182	47068801	1243	167203											
ZNF563	147837	broad.mit.edu	37	chr19	12429757	12429757	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcattcatagggtttctctCcagtgtgaattcgttcatga	9	8	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12429757	A	A	12429757	3	1	214	1	0	0	0	0	1	0	0	0	18121	855	30	3	352	3	ZNF563	19	12429757	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	369575	12429757	46699226	1244	167204											
CACNA1A	773	broad.mit.edu	37	chr19	13335494	13335494	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccttacccttggcaatcttGatgtccagggctgtgcggat	11	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13335494	C	C	13335494	3	2	214	1	0	0	0	0	1	0	0	0	2564	1280	45	4	1842	4	CACNA1A	19	13335494	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	905737	13335494	45793489	1245	167205											
RLN3	117579	broad.mit.edu	37	chr19	14139278	14139278	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccaggagctaaggacagaGataagaggaggttgctggag	16	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14139278	T	T	14139278	1	4	214	0	1	0	0	0	0	0	0	0	13504	957	33	3		3	RLN3	19	14139278	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	803784	14139278	44989705	1246	167206											
CLEC17A	388512	broad.mit.edu	37	chr19	14706196	14706196	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gagacctatggctctacagtGagaccctgagtcagaggaac	12	10	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14706196	C	C	14706196	1	2	214	0	1	0	0	0	0	0	0	0	3533	1305	45	4		4	CLEC17A	19	14706196	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	566918	14706196	44422787	1247	167207											
SYDE1	85360	broad.mit.edu	37	chr19	15224170	15224170	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagacctgcccctacccatCtttgatgcagtcagaggccc	8	16	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15224170	G	G	15224170	1	3	214	0	1	0	0	0	0	0	0	0	15554	928	32	4		4	SYDE1	19	15224170	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	517974	15224170	43904813	1248	167208											
PGLYRP2	114770	broad.mit.edu	37	chr19	15579494	15579494	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattggaggtctgtggctgGcagggtccttgggggtggct	19	6	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15579494	T	T	15579494	3	4	214	1	0	0	0	0	1	0	0	0	11889	1203	42	3	23	3	PGLYRP2	19	15579494	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	355324	15579494	43549489	1249	167209											
CYP4F2	8529	broad.mit.edu	37	chr19	15997122	15997122	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcttcccgtcttcatcctgGagagaaggcagtaacccccc	8	15	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15997122	T	T	15997122	1	4	214	0	1	0	0	0	0	0	0	0	4221	1189	41	3		3	CYP4F2	19	15997122	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	417628	15997122	43131861	1250	167210											
UNC13A	23025	broad.mit.edu	37	chr19	17750726	17750726	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagcgctctttctgaggagGaaggggaggagggaggatgg	21	4	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17750726	T	T	17750726	1	4	214	0	1	0	0	0	0	0	0	0	17110	1189	41	3		3	UNC13A	19	17750726	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1753604	17750726	41378257	1251	167211											
FCHO1	23149	broad.mit.edu	37	chr19	17892001	17892001	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggccccagaggccccgGgcagcatctcagcagtgcct	15	15	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17892001	T	T	17892001	1	4	214	0	1	0	0	0	0	0	0	0	5844	1247	43	2		2	FCHO1	19	17892001	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	141275	17892001	41236982	1252	167212											
CRLF1	9244	broad.mit.edu	37	chr19	18709709	18709709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgacgggtttctctggggGcactgggagaaggggagggt	21	5	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18709709	A	A	18709709	3	1	214	1	0	0	0	0	1	0	0	0	3918	1203	42	4	896	4	CRLF1	19	18709709	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	817708	18709709	40419274	1253	167213											
COMP	1311	broad.mit.edu	37	chr19	18897083	18897083	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcacaagcatctcccacaaAgtcgtggtccacatccgcct	7	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18897083	T	T	18897083	3	4	214	1	0	0	0	0	1	0	0	0	3756	72	3	5	1032	5	COMP	19	18897083	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	187374	18897083	40231900	1254	167214											
SF4	57794	broad.mit.edu	37	chr19	19413017	19413017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgatccagtgtcctccCctgcagggggactgtggcca	13	13	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19413017	A	A	19413017	1	1	214	0	1	0	0	0	0	0	0	0	14268	638	22	2		2	SF4	19	19413017	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	515934	19413017	39715966	1255	167215											
ZNF429	353088	broad.mit.edu	37	chr19	21720247	21720247	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggcaaagcttttaaccgGtcctcacaccttactagcca	7	13	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21720247	T	T	21720247	2	4	214	1	0	0	0	0	0	0	0	1	18029	1248	44	3		3	ZNF429	19	21720247	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	2307230	21720247	37408736	1256	167216											
ZNF208	7757	broad.mit.edu	37	chr19	22193724	22193724	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggacgagaccttgacctcCggctgcagcgagagacaaag	13	11	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22193724	A	A	22193724	1	1	214	0	1	0	0	0	0	0	0	0	17892	667	23	1		1	ZNF208	19	22193724	5'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	473477	22193724	36935259	1257	167217											
ZNF536	9745	broad.mit.edu	37	chr19	31047926	31047927	+	Intron	DNP	GG	TT	TT													tgctttagccagagacagaaGgaccaaattttataaataac							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31047927	TT	TT	31047926	1	4	214	0	1	0	0	0	0	0	0	0	18101	1015	35	2		2	ZNF536	19	31047926	Intron	DNP	GG	TCGA-75-5126-01A-01D-1753-08	8854202	31047926	28081057	1258	167218											
TSHZ3	57616	broad.mit.edu	37	chr19	31769101	31769101	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttctgggccttgttgattGcggatgtcactgtgttttcc	12	9	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31769101	T	T	31769101	3	4	214	1	0	0	0	0	1	0	0	0	16750	1319	46	3	1651	3	TSHZ3	19	31769101	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	721175	31769101	27359882	1259	167219											
PRODH2	58510	broad.mit.edu	37	chr19	36304010	36304010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccctgggctcaggacacCgggctttgtgatccaggaca	13	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36304010	A	A	36304010	1	1	214	0	1	0	0	0	0	0	0	0	12655	667	23	1		1	PRODH2	19	36304010	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4534909	36304010	22824973	1260	167220											
ZNF461	92283	broad.mit.edu	37	chr19	37130807	37130807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgctcaaaatgacagttgCcttcccagatagcgctgaaa	9	10	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37130807	A	A	37130807	3	1	214	1	0	0	0	0	1	0	0	0	18052	739	26	3	1255	3	ZNF461	19	37130807	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	826797	37130807	21998176	1261	167221											
ZNF790	388536	broad.mit.edu	37	chr19	37309614	37309614	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cgtgtaagctgtgaaccccaGataaaagatttcccacattc	7	11	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37309614	C	C	37309614	3	2	214	1	0	0	0	0	1	0	0	0	18291	932	33	4	282	4	ZNF790	19	37309614	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	178807	37309614	21819369	1262	167222											
RYR1	6261	broad.mit.edu	37	chr19	38931492	38931492	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcttcctggagcccacTagcaacgcgcaggtctgtgc	12	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38931492	C	C	38931492	2	2	214	1	0	0	0	0	0	0	0	1	13879	1509	53	5		5	RYR1	19	38931492	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	1621878	38931492	20197491	1263	167223											
RYR1	6261	broad.mit.edu	37	chr19	38976798	38976798	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accccgtcgggggctccgtgGagttccagtttgtgcctgtg	15	12	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38976798	C	C	38976798	3	2	214	1	0	0	0	0	1	0	0	0	13879	1175	41	4	5637	4	RYR1	19	38976798	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	45306	38976798	20152185	1264	167224											
C19orf47	126526	broad.mit.edu	37	chr19	40834484	40834484	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggagaaaaggagagtccggtCgggtggggtcctggaagaca	19	6	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40834484	G	G	40834484	1	3	214	0	1	0	0	0	0	0	0	0	1949	899	31	4		4	C19orf47	19	40834484	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1857686	40834484	18294499	1265	167225											
ADCK4	79934	broad.mit.edu	37	chr19	41211335	41211335	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cgacaggaaggggctggagtCcagcccagaaccaccctctg	13	14	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41211335	G	G	41211335	3	3	214	1	0	0	0	0	1	0	0	0	290	855	30	4	1289	4	ADCK4	19	41211335	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	376851	41211335	17917648	1266	167226											
AXL	558	broad.mit.edu	37	chr19	41744068	41744068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccggagggaggtaagaagGgttggggagggacacgtcac	20	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41744068	T	T	41744068	1	4	214	0	1	0	0	0	0	0	0	0	1243	1247	43	2		2	AXL	19	41744068	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	532733	41744068	17384915	1267	167227											
CCDC97	90324	broad.mit.edu	37	chr19	41822729	41822729	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accggcgctatgctgccctgCgagagctgatccaaggtgtg	14	12	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41822729	T	T	41822729	4	4	214	1	0	0	0	0	0	1	0	0	2903	760	27	4	493	4	CCDC97	19	41822729	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	78661	41822729	17306254	1268	167228											
CIC	23152	broad.mit.edu	37	chr19	42794338	42794338	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctagggggctgctatcgaGgtgtcggagtgtcctgacct	17	9	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42794338	A	A	42794338	1	1	214	0	1	0	0	0	0	0	0	0	3455	1015	35	4		4	CIC	19	42794338	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	971609	42794338	16334645	1269	167229											
MEGF8	1954	broad.mit.edu	37	chr19	42861611	42861611	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacacccttactgcccgccGaggcctgtctctgctcctgg	9	18	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42861611	A	A	42861611	3	1	214	1	0	0	0	0	1	0	0	0	9556	1058	37	4	4791	4	MEGF8	19	42861611	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	67273	42861611	16267372	1270	167230											
PSG8	440533	broad.mit.edu	37	chr19	43269757	43269757	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctgctgtctgtgtgttctCctctgtggagatgagcctag	12	10	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43269757	A	A	43269757	1	1	214	0	1	0	0	0	0	0	0	0	12767	870	30	3		3	PSG8	19	43269757	5'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	408146	43269757	15859226	1271	167231											
PSG6	5675	broad.mit.edu	37	chr19	43430573	43430573	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccacagaggaagaaaggaTactcaaggatactcacagag	11	9	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43430573	A	A	43430573	1	1	214	0	1	0	0	0	0	0	0	0	12765	1421	49	5		5	PSG6	19	43430573	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	160816	43430573	15698410	1272	167232											
PSG4	5672	broad.mit.edu	37	chr19	43697491	43697491	+	3'UTR	DEL	G	-	-													cttgctcttcgtgattccatGggagaaaatggaattggagg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43697491	-	-	43697491	6	5	214	0	1	1	0	1	0	0	0	0	12763	1363	47	0		0	PSG4	19	43697491	3'UTR	DEL	G	TCGA-75-5126-01A-01D-1753-08	266918	43697491	15431492	1273	167233											
IRGC	56269	broad.mit.edu	37	chr19	44223193	44223193	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagatcctgtgccagggcaaGaagttctactttgtgcgcac	12	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44223193	A	A	44223193	2	1	214	1	0	0	0	0	0	0	0	1	7908	933	33	4		4	IRGC	19	44223193	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	525702	44223193	14905790	1274	167234											
ZFP112	7771	broad.mit.edu	37	chr19	44901452	44901452	+	Intron	DEL	G	-	-													gaaataatccatgagatcatGggttcaacaagttgtgaatg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44901452	-	-	44901452	6	5	214	0	1	1	0	1	0	0	0	0	17764	1363	47	0		0	ZFP112	19	44901452	Intron	DEL	G	TCGA-75-5126-01A-01D-1753-08	678259	44901452	14227531	1275	167235											
PVRL2	5819	broad.mit.edu	37	chr19	45389236	45389236	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aagccaccaaccccaaaagcGaagctggaggcacaggagat	11	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45389236	A	A	45389236	2	1	214	1	0	0	0	0	0	0	0	1	12948	1045	37	4		4	PVRL2	19	45389236	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	487784	45389236	13739747	1276	167236											
SYMPK	8189	broad.mit.edu	37	chr19	46352129	46352129	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcagcagcaactcaatgtctCgcttgctgagggatggagaa	12	9	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46352129	T	T	46352129	3	4	214	1	0	0	0	0	1	0	0	0	15558	884	31	4	3607	4	SYMPK	19	46352129	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	962893	46352129	12776854	1277	167237											
SYMPK	8189	broad.mit.edu	37	chr19	46355610	46355610	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgacaaattttcgcacttCgattgacttgtctgcttgga	9	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46355610	T	T	46355610	3	4	214	1	0	0	0	0	1	0	0	0	15558	893	31	4	3657	4	SYMPK	19	46355610	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3481	46355610	12773373	1278	167238											
SYMPK	8189	broad.mit.edu	37	chr19	46355787	46355787	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctttgttgatgatcagctCctggacctggaaggagattg	13	7	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46355787	T	T	46355787	3	4	214	1	0	0	0	0	1	0	0	0	15558	864	30	4	3742	4	SYMPK	19	46355787	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	177	46355787	12773196	1279	167239											
SYMPK	8189	broad.mit.edu	37	chr19	46357405	46357405	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctcctccctttcacctgctCagcccaggatgccccccggg	8	21	2	0	rs114005555	by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46357405	G	G	46357405	1	3	214	0	1	0	0	0	0	0	0	0	15558	841	29	4		4	SYMPK	19	46357405	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1618	46357405	12771578	1280	167240											
SAE1	10055	broad.mit.edu	37	chr19	47706943	47706943	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaggtactgcttctccgaGatggccccagtgtgtgcggt	13	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47706943	T	T	47706943	3	4	214	1	0	0	0	0	1	0	0	0	13916	942	33	3	924	3	SAE1	19	47706943	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1349538	47706943	11422040	1281	167241											
SULT2A1	6822	broad.mit.edu	37	chr19	48382217	48382217	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtggaatgaagacacagCgggatggagggaatttaagg	18	3	0	2	rs73942754	by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48382217	A	A	48382217	1	1	214	0	1	0	0	0	0	0	0	0	15499	783	27	3		3	SULT2A1	19	48382217	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	675274	48382217	10746766	1282	167242											
KDELR1	10945	broad.mit.edu	37	chr19	48892941	48892941	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctataaatcaaccagaccgTggtgaaggagcaggctatgt	12	8	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48892941	C	C	48892941	3	2	214	1	0	0	0	0	1	0	0	0	8189	1696	59	5	430	5	KDELR1	19	48892941	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	510724	48892941	10236042	1283	167243											
SLC17A7	57030	broad.mit.edu	37	chr19	49938490	49938490	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacaatgtagccccagaaAaaggagccgtgtatgaggcc	13	9	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49938490	G	G	49938490	2	3	214	1	0	0	0	0	0	0	0	1	14535	11	1	5		5	SLC17A7	19	49938490	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	1045549	49938490	9190493	1284	167244											
NAPSA	9476	broad.mit.edu	37	chr19	50862710	50862710	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccctttgatgttcactgtCaaactgccatcagccttccc	7	15	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50862710	T	T	50862710	1	4	214	0	1	0	0	0	0	0	0	0	10260	841	29	4		4	NAPSA	19	50862710	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	924220	50862710	8266273	1285	167245											
KLK8	11202	broad.mit.edu	37	chr19	51499412	51499412	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcccacaggggtctgagCcccaggatgtgatgccctgg	13	14	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51499412	A	A	51499412	3	1	214	1	0	0	0	0	1	0	0	0	8481	739	26	3	100	3	KLK8	19	51499412	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	636702	51499412	7629571	1286	167246											
SIGLEC9	27180	broad.mit.edu	37	chr19	51629379	51629379	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtcttccaaggagacGgcacaggtaggatggagctc	14	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51629379	A	A	51629379	3	1	214	1	0	0	0	0	1	0	0	0	14428	1116	39	4	752	4	SIGLEC9	19	51629379	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	129967	51629379	7499604	1287	167247											
ZNF350	59348	broad.mit.edu	37	chr19	52477490	52477490	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttacttctctccagatcCtgctttttgaaatttatact	4	10	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52477490	G	G	52477490	1	3	214	0	1	0	0	0	0	0	0	0	17989	696	24	4		4	ZNF350	19	52477490	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	848111	52477490	6651493	1288	167248											
ZNF28	7576	broad.mit.edu	37	chr19	53311418	53311418	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acacattttaaccaaatggtTatggtggagttcttatcttt	7	6	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53311418	A	A	53311418	1	1	214	0	1	0	0	0	0	0	0	0	17939	1769	61	5		5	ZNF28	19	53311418	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	833928	53311418	5817565	1289	167249											
VN1R4	317703	broad.mit.edu	37	chr19	53770283	53770283	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctatcaatgtgctggacCcgctgcttgtgcctgtgcag	11	13	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53770283	A	A	53770283	2	1	214	1	0	0	0	0	0	0	0	1	17307	610	22	2		2	VN1R4	19	53770283	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	458865	53770283	5358700	1290	167250											
PRKCG	5582	broad.mit.edu	37	chr19	54396517	54396517	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggaattatagttcctatcTatcgccatggcttgagggta	11	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54396517	A	A	54396517	1	1	214	0	1	0	0	0	0	0	0	0	12618	1537	53	5		5	PRKCG	19	54396517	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	626234	54396517	4732466	1291	167251											
LILRB2	10288	broad.mit.edu	37	chr19	54783404	54783404	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttacacagaatgaagcCgccaaatgccacctgtgact	7	13	0	3	rs140970769		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54783404	A	A	54783404	3	1	214	1	0	0	0	0	1	0	0	0	8863	652	23	1	1382	1	LILRB2	19	54783404	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	386887	54783404	4345579	1292	167252											
LAIR2	3904	broad.mit.edu	37	chr19	55019476	55019476	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtccctggaccctgtccCggctgctgtcctctctctgt	11	16	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55019476	T	T	55019476	1	4	214	0	1	0	0	0	0	0	0	0	8675	667	23	4		4	LAIR2	19	55019476	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	236072	55019476	4109507	1293	167253											
LILRA1	11024	broad.mit.edu	37	chr19	55107416	55107416	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggtgaggagcccagcgGgttcagtcagggacacaggc	17	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55107416	T	T	55107416	1	4	214	0	1	0	0	0	0	0	0	0	8856	1247	43	2		2	LILRA1	19	55107416	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	87940	55107416	4021567	1294	167254											
NLRP2	55655	broad.mit.edu	37	chr19	55505858	55505858	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttacaccttactgaatctGtggctagtgtaaaataatca	6	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55505858	A	A	55505858	1	1	214	0	1	0	0	0	0	0	0	0	10572	1392	48	4		4	NLRP2	19	55505858	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	398442	55505858	3623125	1295	167255											
NLRP9	338321	broad.mit.edu	37	chr19	56223777	56223777	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctacgatggtgatcagtaGatactcacccgagacactct	8	12	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56223777	C	C	56223777	1	2	214	0	1	0	0	0	0	0	0	0	10579	957	33	4		4	NLRP9	19	56223777	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	717919	56223777	2905206	1296	167256											
NLRP9	338321	broad.mit.edu	37	chr19	56244354	56244354	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcaacataaaatagtgtttTtgcatagccagttttcctaa	6	8	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56244354	C	C	56244354	2	2	214	1	0	0	0	0	0	0	0	1	10579	1838	64	5		5	NLRP9	19	56244354	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	20577	56244354	2884629	1297	167257											
NLRP13	126204	broad.mit.edu	37	chr19	56424211	56424211	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcgagccatcatccaagctCtcagagcgtgactcagatat	10	12	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56424211	T	T	56424211	2	4	214	1	0	0	0	0	0	0	0	1	10570	912	32	4		4	NLRP13	19	56424211	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	179857	56424211	2704772	1298	167258											
NLRP5	126206	broad.mit.edu	37	chr19	56572759	56572759	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtcctctctctgcctcccCaggctgtggaaatggcagta	11	13	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56572759	A	A	56572759	1	1	214	0	1	0	0	0	0	0	0	0	10575	609	21	2		2	NLRP5	19	56572759	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	148548	56572759	2556224	1299	167259											
DUXA	503835	broad.mit.edu	37	chr19	57671874	57671874	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggctaagaccaacaccTtcgtgggtttattgagggtc	13	8	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57671874	A	A	57671874	1	1	214	0	1	0	0	0	0	0	0	0	4874	1624	56	5		5	DUXA	19	57671874	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1099115	57671874	1457109	1300	167260											
ZNF154	7710	broad.mit.edu	37	chr19	58216288	58216288	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcatctttgagcctcatcAaggagaccccattcctccca	7	15	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58216288	T	T	58216288	2	4	214	1	0	0	0	0	0	0	0	1	17861	117	5	5		5	ZNF154	19	58216288	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	544414	58216288	912695	1301	167261											
A1BG	1	broad.mit.edu	37	chr19	58862863	58862863	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccatcccccagggccacCgcgttcaggtgaaagaagat	10	15	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58862863	A	A	58862863	2	1	214	1	0	0	0	0	0	0	0	1	1	639	23	1		1	A1BG	19	58862863	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	646575	58862863	266120	1302	167262											
CHMP2A	27243	broad.mit.edu	37	chr19	59063360	59063360	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagagagagaactcagtgaGggctatgcactccgtgaggg	16	7	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59063360	A	A	59063360	1	1	214	0	1	0	0	0	0	0	0	0	3385	1015	35	4		4	CHMP2A	19	59063360	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	200497	59063360	65623	1303	167263											
C20orf54	113278	broad.mit.edu	37	chr20	744288	744288	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgttggtgagcgcgttgacGaaggccaccagggtatagat	15	9	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	744288	A	A	744288	2	1	214	1	0	0	0	0	0	0	0	1	2136	1049	37	4		4	C20orf54	20	744288	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08		744288	62281232	1304	167264											
TGM6	343641	broad.mit.edu	37	chr20	2377157	2377157	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgactgcttttcagaggacGatgtgtttctggcctcagag	12	8	3	3	rs143085842	byFrequency;by1000genomes	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2377157	T	T	2377157	3	4	214	1	0	0	0	0	1	0	0	0	15957	1058	37	3	444	3	TGM6	20	2377157	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1632869	2377157	60648363	1305	167265											
ADAM33	80332	broad.mit.edu	37	chr20	3655286	3655286	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtccttggagccccgGggtggccagggacgcagata	17	10	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3655286	T	T	3655286	2	4	214	1	0	0	0	0	0	0	0	1	250	1219	43	2		2	ADAM33	20	3655286	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	1278129	3655286	59370234	1306	167266											
C20orf196	149840	broad.mit.edu	37	chr20	5843764	5843764	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagtcagagaaggaagaGgatgatggccttcggaaatc	15	7	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5843764	T	T	5843764	3	4	214	1	0	0	0	0	1	0	0	0	2123	991	35	2	279	2	C20orf196	20	5843764	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2188478	5843764	57181756	1307	167267											
PLCB1	23236	broad.mit.edu	37	chr20	8782714	8782714	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccacacagggggaaggttcCtcctcattcttgtcggaaac	10	12	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8782714	G	G	8782714	1	3	214	0	1	0	0	0	0	0	0	0	12122	668	24	4		4	PLCB1	20	8782714	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2938950	8782714	54242806	1308	167268											
PAK7	57144	broad.mit.edu	37	chr20	9561435	9561435	+	Frame_Shift_Del	DEL	C	-	-													tttcttccgcgtggcctggaCcgtggctggaggctccctga					rs142065974	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9561435	-	-	9561435	7	5	214	1	0	1	0	1	0	0	0	0	11499	507	18	0	1840	0	PAK7	20	9561435	Frame_Shift_Del	DEL	C	TCGA-75-5126-01A-01D-1753-08	778721	9561435	53464085	1309	167269											
C20orf26	26074	broad.mit.edu	37	chr20	20055049	20055049	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatatggccgtgcagtggtGaacatgaaagagactgtgtg	16	5	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20055049	A	A	20055049	1	1	214	0	1	0	0	0	0	0	0	0	2128	1305	45	4		4	C20orf26	20	20055049	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	10493614	20055049	42970471	1310	167270											
CSTL1	128817	broad.mit.edu	37	chr20	23420937	23420937	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggagaaaccccctgctGctgctgattgccctggtcct	11	14	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23420937	T	T	23420937	2	4	214	1	0	0	0	0	0	0	0	1	4021	1306	46	3		3	CSTL1	20	23420937	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	3365888	23420937	39604583	1311	167271											
DEFB119	245932	broad.mit.edu	37	chr20	29976852	29976852	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctattagttatatttgtcttCatttttggagctgttgtgga	9	4	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29976852	T	T	29976852	1	4	214	0	1	0	0	0	0	0	0	0	4446	826	29	4		4	DEFB119	20	29976852	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	6555915	29976852	33048668	1312	167272											
DEFB119	245932	broad.mit.edu	37	chr20	29977074	29977074	+	Intron	DEL	C	-	-													aattaagcagatgttagtatCcctcaagcggagagaaaaga							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29977074	-	-	29977074	6	5	214	0	1	1	0	1	0	0	0	0	4446	870	30	0		0	DEFB119	20	29977074	Intron	DEL	C	TCGA-75-5126-01A-01D-1753-08	222	29977074	33048446	1313	167273											
FOXS1	2307	broad.mit.edu	37	chr20	30433374	30433374	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgccaggctgctgggacCtgctgggtcaggctcagctt	16	12	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30433374	A	A	30433374	1	1	214	1	0	0	0	0	0	0	0	0	6095	696	24	2		2	FOXS1	20	30433374	Translation_Start_Site	SNP	C	TCGA-75-5126-01A-01D-1753-08	456300	30433374	32592146	1314	167274											
C20orf112	140688	broad.mit.edu	37	chr20	31043985	31043985	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtcggcaccgcagccatccGaggggtaggaggctgtgcca	16	13	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31043985	A	A	31043985	3	1	214	1	0	0	0	0	1	0	0	0	2103	1059	37	4	1011	4	C20orf112	20	31043985	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	610611	31043985	31981535	1315	167275											
ITCH	83737	broad.mit.edu	37	chr20	32990275	32990275	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagagatggagagaccactGaaaaatagactagaaataca	11	5	0	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32990275	A	A	32990275	1	1	214	0	1	0	0	0	0	0	0	0	7938	1305	45	4		4	ITCH	20	32990275	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1946290	32990275	30035245	1316	167276											
GDF5	8200	broad.mit.edu	37	chr20	34022057	34022057	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtcgcttgccctggcgagTggccagtggggcccgccgtt	18	13	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34022057	G	G	34022057	3	3	214	1	0	0	0	0	1	0	0	0	6380	1696	59	5	353	5	GDF5	20	34022057	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	1031782	34022057	29003463	1317	167277											
KIAA1755	85449	broad.mit.edu	37	chr20	36859598	36859598	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagtcagggtggcccagatCcttacctggggatggtacac	14	11	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36859598	G	G	36859598	1	3	214	0	1	0	0	0	0	0	0	0	8327	870	30	4		4	KIAA1755	20	36859598	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2837541	36859598	26165922	1318	167278											
KIAA1755	85449	broad.mit.edu	37	chr20	36869444	36869447	+	Frame_Shift_Del	DEL	GTGG	-	-													tggggcggcctttctgagttGtgggtgggtgctttaagatt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36869447	-	-	36869444	7	5	214	1	0	1	0	1	0	0	0	0	8327	1368	48	0	2561	0	KIAA1755	20	36869444	Frame_Shift_Del	DEL	GTGG	TCGA-75-5126-01A-01D-1753-08	9846	36869444	26156076	1319	167279											
FAM83D	81610	broad.mit.edu	37	chr20	37580296	37580296	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgcccagtccaagcccatCagccccaaactcctgtctca	5	18	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37580296	T	T	37580296	2	4	214	1	0	0	0	0	0	0	0	1	5689	816	29	4		4	FAM83D	20	37580296	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	710852	37580296	25445224	1320	167280											
FAM83D	81610	broad.mit.edu	37	chr20	37580383	37580383	+	Frame_Shift_Del	DEL	G	-	-													cagtccaaggagctcaccctGggcaacctgctgcggatgcg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37580383	-	-	37580383	7	5	214	1	0	1	0	1	0	0	0	0	5689	1335	47	0	1082	0	FAM83D	20	37580383	Frame_Shift_Del	DEL	G	TCGA-75-5126-01A-01D-1753-08	87	37580383	25445137	1321	167281											
LPIN3	64900	broad.mit.edu	37	chr20	39976176	39976176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcccatgtccctgccacCgctttccatttgcaggtaga	9	14	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39976176	T	T	39976176	1	4	214	0	1	0	0	0	0	0	0	0	9007	667	23	4		4	LPIN3	20	39976176	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2395793	39976176	23049344	1322	167282											
PTPRT	11122	broad.mit.edu	37	chr20	40911205	40911205	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgccaattaattagctgtGagttatataaaattgttata	7	3	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40911205	C	C	40911205	1	2	214	0	1	0	0	0	0	0	0	0	12920	1305	45	4		4	PTPRT	20	40911205	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	935029	40911205	22114315	1323	167283											
L3MBTL	26013	broad.mit.edu	37	chr20	42164412	42164412	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccccagtggaaactgctcCttccgtgccccacactcccc	6	21	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42164412	G	G	42164412	1	3	214	0	1	0	0	0	0	0	0	0	8663	696	24	4		4	L3MBTL	20	42164412	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1253207	42164412	20861108	1324	167284											
PABPC1L	80336	broad.mit.edu	37	chr20	43559182	43559182	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggcgacaaaggccgtgacaGagatgaacgggcgcatcgtg	16	9	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43559182	C	C	43559182	3	2	214	1	0	0	0	0	1	0	0	0	11458	943	33	4	1084	4	PABPC1L	20	43559182	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1394770	43559182	19466338	1325	167285											
MMP9	4318	broad.mit.edu	37	chr20	44644779	44644779	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtgatatgtgaaaaccTtagaaagttctagaaatggc	12	4	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44644779	A	A	44644779	1	1	214	0	1	0	0	0	0	0	0	0	9763	1624	56	5		5	MMP9	20	44644779	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1085597	44644779	18380741	1326	167286											
CD40	958	broad.mit.edu	37	chr20	44756741	44756741	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtagggagaaactgcaGgtgaggggtgcatgctgaag	20	4	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44756741	T	T	44756741	1	4	214	0	1	0	0	0	0	0	0	0	3045	1015	35	2		2	CD40	20	44756741	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	111962	44756741	18268779	1327	167287											
CDH22	64405	broad.mit.edu	37	chr20	44803585	44803585	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagcgccgacatgtcgtAggcttcggtgtcctgctcgc	13	15	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44803585	T	T	44803585	3	4	214	1	0	0	0	0	1	0	0	0	3137	420	15	5	443	5	CDH22	20	44803585	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	46844	44803585	18221935	1328	167288											
ELMO2	63916	broad.mit.edu	37	chr20	45022658	45022658	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttcagtcggagctgccaCtgttgaaaacgaggtccatt	10	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45022658	G	G	45022658	1	3	214	0	1	0	0	0	0	0	0	0	5108	580	20	4		4	ELMO2	20	45022658	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	219073	45022658	18002862	1329	167289											
SLC2A10	81031	broad.mit.edu	37	chr20	45355470	45355470	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggccccaggtcccaccaCagcccaggagccctcctgct	9	21	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45355470	G	G	45355470	1	3	214	0	1	0	0	0	0	0	0	0	14653	493	17	4		4	SLC2A10	20	45355470	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	332812	45355470	17670050	1330	167290											
EYA2	2139	broad.mit.edu	37	chr20	45717765	45717765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacgagatctttgcctctgGtgctgccttggaacccactg	10	13	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45717765	T	T	45717765	1	4	214	0	1	0	0	0	0	0	0	0	5372	1276	44	3		3	EYA2	20	45717765	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	362295	45717765	17307755	1331	167291											
NCOA3	8202	broad.mit.edu	37	chr20	46256777	46256777	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatctttcaggtaaaaactCtttttttgtctctctctctc	4	10	6	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46256777	G	G	46256777	1	3	214	0	1	0	0	0	0	0	0	0	10325	928	32	4		4	NCOA3	20	46256777	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	539012	46256777	16768743	1332	167292											
NCOA3	8202	broad.mit.edu	37	chr20	46256799	46256799	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttttgtctctctctctctCtgtgtatacgtacattttta	4	9	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46256799	G	G	46256799	1	3	214	0	1	0	0	0	0	0	0	0	10325	928	32	4		4	NCOA3	20	46256799	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	22	46256799	16768721	1333	167293											
PREX1	57580	broad.mit.edu	37	chr20	47265957	47265957	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtaggaagctgaggccCcggtcttcctgaccaagggt	14	10	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47265957	A	A	47265957	2	1	214	1	0	0	0	0	0	0	0	1	12582	610	22	2		2	PREX1	20	47265957	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	1009158	47265957	15759563	1334	167294											
PREX1	57580	broad.mit.edu	37	chr20	47268179	47268179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggagggaggaaggcgagGcgaggaggattctggaggaa	23	3	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47268179	A	A	47268179	1	1	214	0	1	0	0	0	0	0	0	0	12582	1218	42	4		4	PREX1	20	47268179	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	2222	47268179	15757341	1335	167295											
SLC9A8	23315	broad.mit.edu	37	chr20	48497448	48497448	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacctaagacttagtttgTtgctatcaacaggtgcttgt	8	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48497448	C	C	48497448	1	2	214	0	1	0	0	0	0	0	0	0	14834	1740	60	5		5	SLC9A8	20	48497448	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	1229269	48497448	14528072	1336	167296											
FAM65C	140876	broad.mit.edu	37	chr20	49209638	49209638	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcctctgcaggtagctgtGaaactggaaccaggtaatga	12	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49209638	A	A	49209638	3	1	214	1	0	0	0	0	1	0	0	0	5652	1290	45	4	564	4	FAM65C	20	49209638	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	712190	49209638	13815882	1337	167297											
TSHZ2	128553	broad.mit.edu	37	chr20	51872567	51872567	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcatcttctgattctacAagcccagtttgcctcgagcc	7	14	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51872567	T	T	51872567	3	4	214	1	0	0	0	0	1	0	0	0	16749	130	5	5	2576	5	TSHZ2	20	51872567	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	2662929	51872567	11152953	1338	167298											
CTSZ	1522	broad.mit.edu	37	chr20	57571960	57571960	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtggctcacgcctgtaattCcagcactttgggaggccgag	13	12	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57571960	T	T	57571960	1	4	214	0	1	0	0	0	0	0	0	0	4077	870	30	4		4	CTSZ	20	57571960	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	5699393	57571960	5453560	1339	167299											
TUBB1	81027	broad.mit.edu	37	chr20	57599127	57599127	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gacatctgcttccgtaccctGaagctgacgacacccaccta	7	16	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57599127	A	A	57599127	2	1	214	1	0	0	0	0	0	0	0	1	16879	1277	45	4		4	TUBB1	20	57599127	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	27167	57599127	5426393	1340	167300											
CDH4	1002	broad.mit.edu	37	chr20	60508035	60508036	+	Intron	DNP	CC	AA	AA													cctgctcacgggcagccctcCcccacagccatggtcctgct							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	60508036	AA	AA	60508035	1	1	214	0	1	0	0	0	0	0	0	0	3142	638	22	2		2	CDH4	20	60508035	Intron	DNP	CC	TCGA-75-5126-01A-01D-1753-08	2908908	60508035	2517485	1341	167301											
CDH4	1002	broad.mit.edu	37	chr20	60508196	60508196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccaggtgagactgcggcCcgcccccgcctccccacgcg	13	20	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60508196	A	A	60508196	1	1	214	0	1	0	0	0	0	0	0	0	3142	638	22	2		2	CDH4	20	60508196	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	161	60508196	2517324	1342	167302											
CDH4	1002	broad.mit.edu	37	chr20	60511823	60511823	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgctgacaacgaccccaCggcacccccctatgactccc	7	21	0	2	rs139936391		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60511823	A	A	60511823	3	1	214	1	0	0	0	0	1	0	0	0	3142	536	19	3	2635	3	CDH4	20	60511823	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3627	60511823	2513697	1343	167303											
LAMA5	3911	broad.mit.edu	37	chr20	60889909	60889909	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcgcacgcggccaatgctGgcggacagggccaggctggc	16	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60889909	A	A	60889909	2	1	214	1	0	0	0	0	0	0	0	1	8681	1335	47	4		4	LAMA5	20	60889909	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	378086	60889909	2135611	1344	167304											
COL9A3	1299	broad.mit.edu	37	chr20	61468561	61468561	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cattggtcaccctggcgctcGaggaccccctggataccgcg	12	16	1	0	rs140377811	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61468561	A	A	61468561	3	1	214	1	0	0	0	0	1	0	0	0	3741	1058	37	4	1848	4	COL9A3	20	61468561	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	578652	61468561	1556959	1345	167305											
KCNQ2	3785	broad.mit.edu	37	chr20	62038676	62038676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcggggggatgcccatcCgctgcatgtagatattcacc	12	12	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62038676	A	A	62038676	3	1	214	1	0	0	0	0	1	0	0	0	8153	652	23	1	682	1	KCNQ2	20	62038676	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	570115	62038676	986844	1346	167306											
KCNQ2	3785	broad.mit.edu	37	chr20	62078084	62078084	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcacttccagcccccgccCtccctcggggctcaccagga	11	20	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62078084	A	A	62078084	1	1	214	0	1	0	0	0	0	0	0	0	8153	696	24	2		2	KCNQ2	20	62078084	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	39408	62078084	947436	1347	167307											
C21orf91	54149	broad.mit.edu	37	chr21	19190600	19190600	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcaaatgttgtcatcattCaaatcaatgtttacaaactg	5	8	4	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19190600	G	G	19190600	3	3	214	1	0	0	0	0	1	0	0	0	2156	825	29	4	873	4	C21orf91	21	19190600	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08		19190600	28939295	1348	167308											
TMPRSS15	5651	broad.mit.edu	37	chr21	19755900	19755900	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tattgctagaattttaatttCatagcttaatgattcaaaga	5	4	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19755900	G	G	19755900	1	3	214	0	1	0	0	0	0	0	0	0	16369	841	29	4		4	TMPRSS15	21	19755900	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	565300	19755900	28373995	1349	167309											
KRTAP22-1	337979	broad.mit.edu	37	chr21	31973475	31973475	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactaccatggtggccagggCtatgccaaaggaggcctggg	15	10	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31973475	T	T	31973475	2	4	214	1	0	0	0	0	0	0	0	1	8611	784	28	4		4	KRTAP22-1	21	31973475	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	12217575	31973475	16156420	1350	167310											
KRTAP6-1	337966	broad.mit.edu	37	chr21	31986066	31986066	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	catagccacagagggagcggGagccatagccatagccacag	13	12	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31986066	C	C	31986066	3	2	214	1	0	0	0	0	1	0	0	0	8641	1174	41	4	61	4	KRTAP6-1	21	31986066	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	12591	31986066	16143829	1351	167311											
TIAM1	7074	broad.mit.edu	37	chr21	32492988	32492988	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcatcttgctcctcatactGagcaagatcaaactgctcct	6	13	4	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32492988	A	A	32492988	4	1	214	1	0	0	0	0	0	1	0	0	16013	1299	45	4	305	4	TIAM1	21	32492988	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	506922	32492988	15636907	1352	167312											
ITSN1	6453	broad.mit.edu	37	chr21	35239718	35239719	+	Intron	DNP	TG	GT	GT													gtcatggacaagattcccagTgaacatatctggtaactgtt							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GT	35239719	GT	GT	35239718	1	3	214	0	1	0	0	0	0	0	0	0	7996	1711	59	5		5	ITSN1	21	35239718	Intron	DNP	TG	TCGA-75-5126-01A-01D-1753-08	2746730	35239718	12890177	1353	167313											
DOPEY2	9980	broad.mit.edu	37	chr21	37661499	37661499	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgacaagatgccattattTcaaatgtaagtcagatagga	8	7	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37661499	C	C	37661499	2	2	214	1	0	0	0	0	0	0	0	1	4748	1780	62	5		5	DOPEY2	21	37661499	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	2421781	37661499	10468396	1354	167314											
HMGN1	3150	broad.mit.edu	37	chr21	40720186	40720186	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagtgtagcctaaggcccCgctgcatcccaatgcgcgtt	11	14	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40720186	T	T	40720186	1	4	214	0	1	0	0	0	0	0	0	0	7301	667	23	4		4	HMGN1	21	40720186	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3058687	40720186	7409709	1355	167315											
DSCAM	1826	broad.mit.edu	37	chr21	41539175	41539175	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accctgatgctctgagatgaTataggctccaggtgaacttc	10	10	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41539175	G	G	41539175	2	3	214	1	0	0	0	0	0	0	0	1	4808	1396	49	5		5	DSCAM	21	41539175	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	818989	41539175	6590720	1356	167316											
DSCAM	1826	broad.mit.edu	37	chr21	41684035	41684035	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatcaactggctttggtgctCcacagcggcggcctcattcc	10	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41684035	A	A	41684035	4	1	214	1	0	0	0	0	0	1	0	0	4808	864	30	3	4103	3	DSCAM	21	41684035	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	144860	41684035	6445860	1357	167317											
DSCAM	1826	broad.mit.edu	37	chr21	41725607	41725607	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaggcagctccacacgcTgcccagccatggctttgcga	11	15	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41725607	A	A	41725607	3	1	214	1	0	0	0	0	1	0	0	0	4808	1580	55	5	5435	5	DSCAM	21	41725607	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	41572	41725607	6404288	1358	167318											
DSCAM	1826	broad.mit.edu	37	chr21	42064747	42064747	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagcctacctgagacaagtGaaacagtgtctttctcccat	7	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42064747	A	A	42064747	3	1	214	1	0	0	0	0	1	0	0	0	4808	1294	45	4	5665	4	DSCAM	21	42064747	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	339140	42064747	6065148	1359	167319											
KRTAP10-5	386680	broad.mit.edu	37	chr21	46000336	46000336	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacagctcactggggtgcaGaccagggtcaggcagggggc	17	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46000336	A	A	46000336	2	1	214	1	0	0	0	0	0	0	0	1	8583	929	33	4		4	KRTAP10-5	21	46000336	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	3935589	46000336	2129559	1360	167320											
KRTAP10-6	386674	broad.mit.edu	37	chr21	46011972	46011972	+	Frame_Shift_Del	DEL	C	-	-													ctgctggcagcatgaagaatCcccacagcagacggacacac							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	46011972	-	-	46011972	7	5	214	1	0	1	0	1	0	0	0	0	8584	855	30	0	707	0	KRTAP10-6	21	46011972	Frame_Shift_Del	DEL	C	TCGA-75-5126-01A-01D-1753-08	11636	46011972	2117923	1361	167321											
C21orf29	54084	broad.mit.edu	37	chr21	46122237	46122237	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgccccggccccctgcCtgaccctggtctgcacccca	10	21	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46122237	A	A	46122237	1	1	214	0	1	0	0	0	0	0	0	0	2146	696	24	2		2	C21orf29	21	46122237	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	110265	46122237	2007658	1362	167322											
COL6A2	1292	broad.mit.edu	37	chr21	47536542	47536542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaggcaccgagctcactGcgccggctttcctcctacac	9	16	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47536542	T	T	47536542	1	4	214	0	1	0	0	0	0	0	0	0	3732	1334	46	3		3	COL6A2	21	47536542	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1414305	47536542	593353	1363	167323											
COL6A2	1292	broad.mit.edu	37	chr21	47546018	47546018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcggcatcggggacatgttCcacgagaagcacgagagtga	14	9	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47546018	A	A	47546018	3	1	214	1	0	0	0	0	1	0	0	0	3732	854	30	3	2387	3	COL6A2	21	47546018	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	9476	47546018	583877	1364	167324											
LSS	4047	broad.mit.edu	37	chr21	47647672	47647672	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcccggccagaggaaccctCttcacatacagcccaagtca	8	16	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47647672	G	G	47647672	1	3	214	0	1	0	0	0	0	0	0	0	9152	928	32	4		4	LSS	21	47647672	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	101654	47647672	482223	1365	167325											
GNB1L	54584	broad.mit.edu	37	chr22	19776223	19776223	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgtctcccgggaagggaGtgggtgagtcatgcgcgtgg	18	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19776223	A	A	19776223	1	1	214	0	1	0	0	0	0	0	0	0	6580	1044	36	4		4	GNB1L	22	19776223	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08		19776223	31528343	1366	167326											
KLHL22	84861	broad.mit.edu	37	chr22	20805970	20805970	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acagtgcttcgggggagactCtatgcaattgcaggatatga	13	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20805970	G	G	20805970	1	3	214	0	1	0	0	0	0	0	0	0	8448	928	32	4		4	KLHL22	22	20805970	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1029747	20805970	30498596	1367	167327											
UPB1	51733	broad.mit.edu	37	chr22	24891485	24891485	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaactcaggtccgcagcCaagaggctaagctaatgggg	14	9	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24891485	T	T	24891485	1	4	214	0	1	0	0	0	0	0	0	0	17128	609	21	4		4	UPB1	22	24891485	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4085515	24891485	26413081	1368	167328											
CABP7	164633	broad.mit.edu	37	chr22	30127185	30127185	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgatgagaaaagtgacCacgtgggggtcagtcggggg	18	6	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30127185	A	A	30127185	1	1	214	0	1	0	0	0	0	0	0	0	2561	609	21	2		2	CABP7	22	30127185	3'UTR	SNP	C	TCGA-75-5126-01A-01D-1753-08	5235700	30127185	21177381	1369	167329											
SFI1	9814	broad.mit.edu	37	chr22	32012689	32012689	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccccctccctggcttcctCctagcttccttgctcagcat	6	19	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32012689	T	T	32012689	1	4	214	0	1	0	0	0	0	0	0	0	14269	870	30	4		4	SFI1	22	32012689	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1885504	32012689	19291877	1370	167330											
RFPL2	10739	broad.mit.edu	37	chr22	32589121	32589121	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagggacattggtttttcCagatagtctgagcagacggg	13	8	1	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32589121	A	A	32589121	2	1	214	1	0	0	0	0	0	0	0	1	13362	581	21	2		2	RFPL2	22	32589121	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	576432	32589121	18715445	1371	167331											
BPIL2	254240	broad.mit.edu	37	chr22	32833771	32833771	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagttcaggtcaaggtagttCtcagtaatttctggagaact	10	6	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32833771	G	G	32833771	3	3	214	1	0	0	0	0	1	0	0	0	1501	912	32	4	836	4	BPIL2	22	32833771	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	244650	32833771	18470795	1372	167332											
HMGXB4	10042	broad.mit.edu	37	chr22	35661015	35661015	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgttgatgaggagtcttttCaatatccctcccaacaagcg	8	11	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35661015	T	T	35661015	4	4	214	1	0	0	0	0	0	1	0	0	7306	827	29	4	648	4	HMGXB4	22	35661015	Nonsense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2827244	35661015	15643551	1373	167333											
HMGXB4	10042	broad.mit.edu	37	chr22	35661072	35661072	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagaaatcagctcgggatGagcagggtgctttactccta	11	9	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35661072	T	T	35661072	4	4	214	1	0	0	0	0	0	1	0	0	7306	1291	45	3	705	3	HMGXB4	22	35661072	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	57	35661072	15643494	1374	167334											
XPNPEP3	63929	broad.mit.edu	37	chr22	41282319	41282319	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcggcttctcattctaagctGagacgaacatggtttggtat	10	8	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41282319	T	T	41282319	4	4	214	1	0	0	0	0	0	1	0	0	17571	1291	45	3	606	3	XPNPEP3	22	41282319	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	5621247	41282319	10022247	1375	167335											
L3MBTL2	83746	broad.mit.edu	37	chr22	41605590	41605590	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtttgtaaaaggggtatttGaaaggttcccgaaagtgtga	13	3	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41605590	C	C	41605590	1	2	214	0	1	0	0	0	0	0	0	0	8664	1305	45	4		4	L3MBTL2	22	41605590	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	323271	41605590	9698976	1376	167336											
POLR3H	171568	broad.mit.edu	37	chr22	41926752	41926752	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggaagtggtggcatctgctGagctgggccctgtgggggac	19	8	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41926752	A	A	41926752	3	1	214	1	0	0	0	0	1	0	0	0	12331	1294	45	4	122	4	POLR3H	22	41926752	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	321162	41926752	9377814	1377	167337											
PARVG	64098	broad.mit.edu	37	chr22	44584862	44584862	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagtgtggcccacggtcCaacaccaagaatgggctctc	12	12	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44584862	T	T	44584862	1	4	214	0	1	0	0	0	0	0	0	0	11564	609	21	4		4	PARVG	22	44584862	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	2658110	44584862	6719704	1378	167338											
C22orf9	23313	broad.mit.edu	37	chr22	45608157	45608157	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gacccccacccatggagcatCcagagaggctggaggacacc	12	15	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45608157	A	A	45608157	1	1	214	0	1	0	0	0	0	0	0	0	2173	855	30	3		3	C22orf9	22	45608157	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1023295	45608157	5696409	1379	167339											
MLC1	23209	broad.mit.edu	37	chr22	50523201	50523201	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgtggctgaagcaggggGgcagtctcttcgacagctgc	15	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50523201	A	A	50523201	3	1	214	1	0	0	0	0	1	0	0	0	9705	1232	43	4	1046	4	MLC1	22	50523201	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	4915044	50523201	781365	1380	167340											
MOV10L1	54456	broad.mit.edu	37	chr22	50573048	50573048	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaagcagtggacagtccAccagcaaaaaggtagtgctc	10	11	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50573048	T	T	50573048	3	4	214	1	0	0	0	0	1	0	0	0	9813	159	6	5	2158	5	MOV10L1	22	50573048	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	49847	50573048	731518	1381	167341											
PLXNB2	23654	broad.mit.edu	37	chr22	50724456	50724456	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgccgtcctcagggttgggcGaagcctcccggcactcgtgg	15	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50724456	T	T	50724456	4	4	214	1	0	0	0	0	0	1	0	0	12219	1059	37	3	3679	3	PLXNB2	22	50724456	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	151408	50724456	580110	1382	167342											
PLXNB2	23654	broad.mit.edu	37	chr22	50724537	50724537	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aggagatgcacctgcatccaGaggggatcgtgagcagggct	16	9	0	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50724537	C	C	50724537	1	2	214	0	1	0	0	0	0	0	0	0	12219	957	33	4		4	PLXNB2	22	50724537	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	81	50724537	580029	1383	167343											
CHKB	1120	broad.mit.edu	37	chr22	51018042	51018042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagttttaacttctcccccaCtgtcctaactccactctcca	2	18	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51018042	A	A	51018042	1	1	214	0	1	0	0	0	0	0	0	0	3379	580	20	3		3	CHKB	22	51018042	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	293505	51018042	286524	1384	167344											
ARSA	410	broad.mit.edu	37	chr22	51065369	51065369	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtccgggcagccagggggGctgcgcctccacggacaggt	17	13	0	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51065369	C	C	51065369	3	2	214	1	0	0	0	0	1	0	0	0	991	1203	42	4	976	4	ARSA	22	51065369	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	47327	51065369	239197	1385	167345											
MXRA5	25878	broad.mit.edu	37	chrX	3235848	3235848	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtagacagtgacgtcCtggtagtgggaggctaggat	16	8	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3235848	A	A	3235848	3	1	214	1	0	0	0	0	1	0	0	0	10097	680	24	2	2620	2	MXRA5	23	3235848	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08		3235848	152034712	1386	167346											
NLGN4X	57502	broad.mit.edu	37	chrX	5811136	5811136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatgatctcttcgttctGgatgtgagcgatatcatttg	10	7	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5811136	T	T	5811136	3	4	214	1	0	0	0	0	1	0	0	0	10559	1357	47	2	281	2	NLGN4X	23	5811136	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2575288	5811136	149459424	1387	167347											
TBL1X	6907	broad.mit.edu	37	chrX	9651934	9651934	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaccttactgaacccaaatCagaagcatccctgggcattc	6	15	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9651934	T	T	9651934	1	4	214	0	1	0	0	0	0	0	0	0	15761	841	29	4		4	TBL1X	23	9651934	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3840798	9651934	145618626	1388	167348											
FRMPD4	9758	broad.mit.edu	37	chrX	12725092	12725092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccacagcagctcattcCgcctctgatgacaaaagcaa	8	13	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12725092	A	A	12725092	1	1	214	0	1	0	0	0	0	0	0	0	6119	667	23	1		1	FRMPD4	23	12725092	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3073158	12725092	142545468	1389	167349											
SCML2	10389	broad.mit.edu	37	chrX	18274796	18274796	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgattctgaagttcattaTgaatacaagaaattactttc	5	5	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18274796	A	A	18274796	1	1	214	0	1	0	0	0	0	0	0	0	14023	1479	51	5		5	SCML2	23	18274796	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	5549704	18274796	136995764	1390	167350											
CNKSR2	22866	broad.mit.edu	37	chrX	21609323	21609323	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaggaggtaagataaaGcaccttttgttttctcatcc	8	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21609323	T	T	21609323	1	4	214	0	1	0	0	0	0	0	0	0	3639	986	34	3		3	CNKSR2	23	21609323	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	3334527	21609323	133661237	1391	167351											
CNKSR2	22866	broad.mit.edu	37	chrX	21613540	21613540	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttcagagtatgtagaagGtcagtgaggcctagaattct	11	5	3	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21613540	C	C	21613540	1	2	214	0	1	0	0	0	0	0	0	0	3639	1276	44	4		4	CNKSR2	23	21613540	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	4217	21613540	133657020	1392	167352											
YY2	404281	broad.mit.edu	37	chrX	21863482	21863482	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcttcctcgcttcacaatGaacaggtgttacaagttgtg	8	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21863482	C	C	21863482	3	2	214	1	0	0	0	0	1	0	0	0	17636	1291	45	4		4	YY2	23	21863482	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	249942	21863482	133407078	1393	167353											
PHEX	5251	broad.mit.edu	37	chrX	22112124	22112124	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgggatgccctttacaagttCatggtggatactgccgtgct	12	10	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22112124	A	A	22112124	3	1	214	1	0	0	0	0	1	0	0	0	11914	825	29	3	782	3	PHEX	23	22112124	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	248642	22112124	133158436	1394	167354											
PHEX	5251	broad.mit.edu	37	chrX	22263446	22263446	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgggatgcttttctcttCtaggtgaggtgcaattccta	11	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22263446	T	T	22263446	1	4	214	0	1	0	0	0	0	0	0	0	11914	928	32	4		4	PHEX	23	22263446	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	151322	22263446	133007114	1395	167355											
MAGEB6	158809	broad.mit.edu	37	chrX	26212996	26212996	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagataagtacgtggtttacCggcaggtgtgcaacagtgat	13	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26212996	T	T	26212996	3	4	214	1	0	0	0	0	1	0	0	0	9271	643	23	4	1035	4	MAGEB6	23	26212996	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3949550	26212996	129057564	1396	167356											
MAGEB3	4114	broad.mit.edu	37	chrX	30254210	30254210	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagaaaaagtctgctggtAggtcacgtagtgctctcaag	11	9	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30254210	C	C	30254210	2	2	214	1	0	0	0	0	0	0	0	1	9269	411	15	5		5	MAGEB3	23	30254210	Silent	SNP	A	TCGA-75-5126-01A-01D-1753-08	4041214	30254210	125016350	1397	167357											
FAM47B	170062	broad.mit.edu	37	chrX	34962493	34962493	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtacggcatggagctagaCgacatggatgaggtcgaatt	14	6	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34962493	A	A	34962493	3	1	214	1	0	0	0	0	1	0	0	0	5621	535	19	3	1547	3	FAM47B	23	34962493	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4708283	34962493	120308067	1398	167358											
CXorf59	286464	broad.mit.edu	37	chrX	36091444	36091444	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctttggctggcctgaaGgaccccattctttttctatt	8	11	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36091444	T	T	36091444	4	4	214	1	0	0	0	0	0	1	0	0	4148	1001	35	2	389	2	CXorf59	23	36091444	Nonsense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	1128951	36091444	119179116	1399	167359											
FAM47C	442444	broad.mit.edu	37	chrX	37029546	37029546	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcaacgtgcaatgcaagtTtacaagtacaaagaagacgt	8	7	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37029546	A	A	37029546	2	1	214	1	0	0	0	0	0	0	0	1	5622	1828	64	5		5	FAM47C	23	37029546	Silent	SNP	T	TCGA-75-5126-01A-01D-1753-08	938102	37029546	118241014	1400	167360											
NYX	60506	broad.mit.edu	37	chrX	41334056	41334056	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcctctcctcccgtggGgtgggaggcgcgggccggca	18	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41334056	T	T	41334056	2	4	214	1	0	0	0	0	0	0	0	1	10892	1219	43	2		2	NYX	23	41334056	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	4304510	41334056	113936504	1401	167361											
KDM6A	7403	broad.mit.edu	37	chrX	44969432	44969432	+	Frame_Shift_Del	DEL	T	-	-													caagcggaaacttggaaaacTttgtggtgctagaacagtac							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44969432	-	-	44969432	7	5	214	1	0	1	0	1	0	0	0	0	8207	1609	56	0	4224	0	KDM6A	23	44969432	Frame_Shift_Del	DEL	T	TCGA-75-5126-01A-01D-1753-08	3635376	44969432	110301128	1402	167362											
DGKK	139189	broad.mit.edu	37	chrX	50167176	50167176	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacatgtctttacttattaGtccatcttcccacacaaagg	5	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50167176	C	C	50167176	1	2	214	0	1	0	0	0	0	0	0	0	4512	1044	36	4		4	DGKK	23	50167176	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	5197744	50167176	105103384	1403	167363											
ZC3H12B	340554	broad.mit.edu	37	chrX	64709219	64709219	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcaagccctgaattgtctCttgaagatgaaatagataac	8	7	1	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64709219	A	A	64709219	3	1	214	1	0	0	0	0	1	0	0	0	17688	913	32	3	540	3	ZC3H12B	23	64709219	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	14542043	64709219	90561341	1404	167364											
VSIG4	11326	broad.mit.edu	37	chrX	65253303	65253303	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatcagtgctttcctaccccCatagtgactcacgtttctgg	7	13	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65253303	A	A	65253303	1	1	214	0	1	0	0	0	0	0	0	0	17352	609	21	2		2	VSIG4	23	65253303	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	544084	65253303	90017257	1405	167365											
HEPH	9843	broad.mit.edu	37	chrX	65480010	65480010	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaggttgtggagatggtGgccagcaaccctgggacatg	16	7	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65480010	A	A	65480010	2	1	214	1	0	0	0	0	0	0	0	1	7121	1335	47	4		4	HEPH	23	65480010	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	226707	65480010	89790550	1406	167366											
HEPH	9843	broad.mit.edu	37	chrX	65480070	65480070	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaccatgtccatgctggCatggagaccctcttcactgt	9	13	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65480070	A	A	65480070	2	1	214	1	0	0	0	0	0	0	0	1	7121	697	25	3		3	HEPH	23	65480070	Silent	SNP	C	TCGA-75-5126-01A-01D-1753-08	60	65480070	89790490	1407	167367											
MED12	9968	broad.mit.edu	37	chrX	70360843	70360843	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggctggcctctagtggtgCtggagaagttttctaccctc	13	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70360843	T	T	70360843	1	4	214	0	1	0	0	0	0	0	0	0	9521	812	28	4		4	MED12	23	70360843	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	4880773	70360843	84909717	1408	167368											
KIAA2022	340533	broad.mit.edu	37	chrX	73962057	73962057	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactcttagcagcctttgCctcatgaaattcagatagac	8	10	3	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73962057	A	A	73962057	3	1	214	1	0	0	0	0	1	0	0	0	8339	739	26	3	2223	3	KIAA2022	23	73962057	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3601214	73962057	81308503	1409	167369											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912982	77912982	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggattatcaaaagtatcctgGagcacaggtatgaaactttc	9	7	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77912982	T	T	77912982	2	4	214	1	0	0	0	0	0	0	0	1	17717	1161	41	3		3	ZCCHC5	23	77912982	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	3950925	77912982	77357578	1410	167370											
LPAR4	2846	broad.mit.edu	37	chrX	78011436	78011436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggaagtgagtgatcaaaCaacaaataatggtggtgaat	12	3	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78011436	A	A	78011436	3	1	214	1	0	0	0	0	1	0	0	0	8994	478	17	3	1072	3	LPAR4	23	78011436	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	98454	78011436	77259124	1411	167371											
KLHL4	56062	broad.mit.edu	37	chrX	86868838	86868838	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaattaaattttttacaaaAttatatgatgaaccatattc	2	4	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86868838	G	G	86868838	1	3	214	0	1	0	0	0	0	0	0	0	8462	116	4	5		5	KLHL4	23	86868838	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	8857402	86868838	68401722	1412	167372											
PABPC5	140886	broad.mit.edu	37	chrX	90691123	90691123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttggcagattcaaattcCcagaagagcgggcggctgag	14	8	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90691123	A	A	90691123	3	1	214	1	0	0	0	0	1	0	0	0	11461	623	22	2	549	2	PABPC5	23	90691123	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	3822285	90691123	64579437	1413	167373											
NOX1	27035	broad.mit.edu	37	chrX	100106320	100106320	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatccacttccaagactgcaCagagacagggttaagaatga	10	9	0	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100106320	T	T	100106320	1	4	214	0	1	0	0	0	0	0	0	0	10651	493	17	4		4	NOX1	23	100106320	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	9415197	100106320	55164240	1414	167374											
CENPI	2491	broad.mit.edu	37	chrX	100356187	100356187	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aagcaactcgaagaacatctCaaaacatggacaaaacaatc	5	10	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100356187	T	T	100356187	3	4	214	1	0	0	0	0	1	0	0	0	3263	838	29	4	130	4	CENPI	23	100356187	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	249867	100356187	54914373	1415	167375											
NXF3	56000	broad.mit.edu	37	chrX	102334864	102334864	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaatgagtcttgaaagtctGactgtaggcagacttgtact	10	7	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102334864	C	C	102334864	1	2	214	0	1	0	0	0	0	0	0	0	10880	1305	45	4		4	NXF3	23	102334864	Intron	SNP	G	TCGA-75-5126-01A-01D-1753-08	1978677	102334864	52935696	1416	167376											
NXF3	56000	broad.mit.edu	37	chrX	102347901	102347901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtgagacctgagactcCagcctcatgctggccaactc	9	16	1	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102347901	T	T	102347901	1	4	214	0	1	0	0	0	0	0	0	0	10880	609	21	4		4	NXF3	23	102347901	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	13037	102347901	52922659	1417	167377											
NRK	203447	broad.mit.edu	37	chrX	105190361	105190361	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgacctggctattggttctGaaaaaagactaaagattttc	8	6	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105190361	C	C	105190361	3	2	214	1	0	0	0	0	1	0	0	0	10750	1291	45	4	4360	4	NRK	23	105190361	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	2842460	105190361	50080199	1418	167378											
SERPINA7	6906	broad.mit.edu	37	chrX	105280371	105280371	+	Intron	DEL	A	-	-													agagaccatgagctcccctcAgcactccacccaagtatctg							TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105280371	-	-	105280371	6	5	214	0	1	1	0	1	0	0	0	0	14207	203	7	0		0	SERPINA7	23	105280371	Intron	DEL	A	TCGA-75-5126-01A-01D-1753-08	90010	105280371	49990189	1419	167379											
COL4A6	1288	broad.mit.edu	37	chrX	107430276	107430276	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgagtcataaccactcTacaaggggtcaaatttccaa	6	12	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107430276	C	C	107430276	1	2	214	0	1	0	0	0	0	0	0	0	3727	1537	53	5		5	COL4A6	23	107430276	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	2149905	107430276	47840284	1420	167380											
GUCY2F	2986	broad.mit.edu	37	chrX	108719259	108719259	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttccaaatgcctgtcaatCagaggaaaaggtttgttact	9	7	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108719259	G	G	108719259	1	3	214	0	1	0	0	0	0	0	0	0	6963	841	29	4		4	GUCY2F	23	108719259	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	1288983	108719259	46551301	1421	167381											
CAPN6	827	broad.mit.edu	37	chrX	110495761	110495761	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaggttatctttgtaaaAttgtttttccaggtcaagaa	8	5	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110495761	G	G	110495761	1	3	214	0	1	0	0	0	0	0	0	0	2656	116	4	5		5	CAPN6	23	110495761	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	1776502	110495761	44774799	1422	167382											
LAMP2	3920	broad.mit.edu	37	chrX	119575692	119575692	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgctctttgttgcacataTaagaacttcccaggggggca	10	10	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119575692	A	A	119575692	3	1	214	1	0	0	0	0	1	0	0	0	8690	1406	49	5	545	5	LAMP2	23	119575692	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	9079931	119575692	35694868	1423	167383											
DCAF12L2	340578	broad.mit.edu	37	chrX	125298989	125298989	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaggcacacattctctcGgcagtagggcagcctgatgg	14	11	2	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125298989	T	T	125298989	2	4	214	1	0	0	0	0	0	0	0	1	4298	1124	39	1		1	DCAF12L2	23	125298989	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	5723297	125298989	29971571	1424	167384											
ARHGAP36	158763	broad.mit.edu	37	chrX	130218994	130218994	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttccgtgacatgaaggattCtctgctgccagatgatctgt	10	9	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130218994	A	A	130218994	3	1	214	1	0	0	0	0	1	0	0	0	885	913	32	3	933	3	ARHGAP36	23	130218994	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4920005	130218994	25051566	1425	167385											
IGSF1	3547	broad.mit.edu	37	chrX	130417006	130417006	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaacctctatatgatgcGtcatagtaaaaacagaggta	9	6	2	3			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130417006	A	A	130417006	2	1	214	1	0	0	0	0	0	0	0	1	7666	1136	40	4		4	IGSF1	23	130417006	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	198012	130417006	24853554	1426	167386											
FRMD7	90167	broad.mit.edu	37	chrX	131214383	131214383	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtttattgttgaaatcaAaagactagatgaatgacata	7	5	1	5			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131214383	G	G	131214383	1	3	214	0	1	0	0	0	0	0	0	0	6115	29	1	5		5	FRMD7	23	131214383	Intron	SNP	A	TCGA-75-5126-01A-01D-1753-08	797377	131214383	24056177	1427	167387											
GPR112	139378	broad.mit.edu	37	chrX	135430934	135430934	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcactggagctatttcctCcattccaaagaccacatttt	6	12	0	1	rs141778568	byFrequency	TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135430934	T	T	135430934	3	4	214	1	0	0	0	0	1	0	0	0	6694	855	30	4	5079	4	GPR112	23	135430934	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	4216551	135430934	19839626	1428	167388											
GPR112	139378	broad.mit.edu	37	chrX	135455157	135455157	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctttggctgtgctgcgGggggaccacacgtttgatgg	17	9	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135455157	A	A	135455157	2	1	214	1	0	0	0	0	0	0	0	1	6694	1219	43	4		4	GPR112	23	135455157	Silent	SNP	G	TCGA-75-5126-01A-01D-1753-08	24223	135455157	19815403	1429	167389											
GPR112	139378	broad.mit.edu	37	chrX	135455294	135455294	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcattcatttactcctTgggagagagagggcactccg	11	10	3	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135455294	A	A	135455294	1	1	214	0	1	0	0	0	0	0	0	0	6694	1827	63	5		5	GPR112	23	135455294	Intron	SNP	T	TCGA-75-5126-01A-01D-1753-08	137	135455294	19815266	1430	167390											
MCF2	4168	broad.mit.edu	37	chrX	138713553	138713553	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaagggcaaagacaacataCatttctgaagatgatccatt	8	7	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138713553	A	A	138713553	5	1	214	1	0	0	0	0	0	0	1	0	9471	492	17	3	2660	3	MCF2	23	138713553	Splice_Site	SNP	C	TCGA-75-5126-01A-01D-1753-08	3258259	138713553	16557007	1431	167391											
MAGEC3	139081	broad.mit.edu	37	chrX	140969466	140969466	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctgtgaggggagtctgAgtgatgagcagggcatgccc	16	9	2	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140969466	G	G	140969466	3	3	214	1	0	0	0	0	1	0	0	0	9274	304	11	5	807	5	MAGEC3	23	140969466	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	2255913	140969466	14301094	1432	167392											
MAGEC1	9947	broad.mit.edu	37	chrX	140995831	140995831	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtagatgaatatacaagtTcctcagacaccttgctagag	8	9	1	4			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140995831	C	C	140995831	3	2	214	1	0	0	0	0	1	0	0	0	9272	1783	62	5	2647	5	MAGEC1	23	140995831	Missense_Mutation	SNP	T	TCGA-75-5126-01A-01D-1753-08	26365	140995831	14274729	1433	167393											
SPANXN1	494118	broad.mit.edu	37	chrX	144337175	144337175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtctttctggcctctcCctgttttcttaacagatgca	6	11	4	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144337175	A	A	144337175	1	1	214	0	1	0	0	0	0	0	0	0	15106	638	22	2		2	SPANXN1	23	144337175	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	3341344	144337175	10933385	1434	167394											
MAGEA8	4107	broad.mit.edu	37	chrX	149013559	149013559	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttggcattgatgtgaaggaAgtggaccctgccggccactc	13	10	0	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149013559	T	T	149013559	3	4	214	1	0	0	0	0	1	0	0	0	9261	69	3	5	515	5	MAGEA8	23	149013559	Missense_Mutation	SNP	A	TCGA-75-5126-01A-01D-1753-08	4676384	149013559	6257001	1435	167395											
MAGEA6	4105	broad.mit.edu	37	chrX	151869542	151869542	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccactaccatgaactacCctctctggagccaatcctat	4	17	1	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151869542	A	A	151869542	3	1	214	1	0	0	0	0	1	0	0	0	9260	623	22	2	234	2	MAGEA6	23	151869542	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	2855983	151869542	3401018	1436	167396											
MAGEA1	4100	broad.mit.edu	37	chrX	152481991	152481991	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaagaatgggcctcatGtcacacgaggcaggggaagc	16	8	2	2			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152481991	T	T	152481991	1	4	214	0	1	0	0	0	0	0	0	0	9251	1392	48	3		3	MAGEA1	23	152481991	3'UTR	SNP	G	TCGA-75-5126-01A-01D-1753-08	612449	152481991	2788569	1437	167397											
ATP2B3	492	broad.mit.edu	37	chrX	152807404	152807404	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagtgccctggtcttcaCccaccctgtcaaggaagctc	11	14	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152807404	A	A	152807404	1	1	214	0	1	0	0	0	0	0	0	0	1145	522	18	3		3	ATP2B3	23	152807404	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	325413	152807404	2463156	1438	167398											
ATP2B3	492	broad.mit.edu	37	chrX	152825152	152825152	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaaccttcccgggcaggCggcccatggaaaggtgactg	13	15	0	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152825152	T	T	152825152	1	4	214	0	1	0	0	0	0	0	0	0	1145	783	27	4		4	ATP2B3	23	152825152	Intron	SNP	C	TCGA-75-5126-01A-01D-1753-08	17748	152825152	2445408	1439	167399											
AVPR2	554	broad.mit.edu	37	chrX	153171639	153171639	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtatcgccgcctgccaggtgCtcatcttccgggagattcat	11	13	3	1			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153171639	G	G	153171639	3	3	214	1	0	0	0	0	1	0	0	0	1238	797	28	4	685	4	AVPR2	23	153171639	Missense_Mutation	SNP	C	TCGA-75-5126-01A-01D-1753-08	346487	153171639	2098921	1440	167400											
RAB39B	116442	broad.mit.edu	37	chrX	154493666	154493666	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgcggctcggcaggatcTagctcagccgcgagcgcatc	15	14	2	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154493666	C	C	154493666	1	2	214	0	1	0	0	0	0	0	0	0	13038	1537	53	5		5	RAB39B	23	154493666	5'UTR	SNP	T	TCGA-75-5126-01A-01D-1753-08	1322027	154493666	776894	1441	167401											
IL9R	3581	broad.mit.edu	37	chrX	155239571	155239571	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagccctgcgtccaggagGccactgcactgctcacttgt	12	14	1	0			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155239571	T	T	155239571	3	4	214	1	0	0	0	0	1	0	0	0	7778	1203	42	3	1097	3	IL9R	23	155239571	Missense_Mutation	SNP	G	TCGA-75-5126-01A-01D-1753-08	745905	155239571	30989	1442	167402											
NOC2L	26155	broad.mit.edu	37	chr1	881525	881525	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccaggaagtcacaacacAcccccaggtcccctcgccga	7	19	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	881525	C	C	881525	1	2	215	0	1	0	0	0	0	0	0	0	10608	174	6	5		5	NOC2L	1	881525	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08		881525	248369096	1	167403											
UBIAD1	29914	broad.mit.edu	37	chr1	11345795	11345795	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctacgccatccaggtgggGtccctggccatcttcccact	10	17	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11345795	T	T	11345795	2	4	215	1	0	0	0	0	0	0	0	1	17011	1248	44	3		3	UBIAD1	1	11345795	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	10464270	11345795	237904826	2	167404											
FBXO2	26232	broad.mit.edu	37	chr1	11709842	11709842	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggaccctctcaccagtccTtcaccacgatggccggctga	9	17	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11709842	A	A	11709842	3	1	215	1	0	0	0	0	1	0	0	0	5789	1609	56	5	291	5	FBXO2	1	11709842	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	364047	11709842	237540779	3	167405											
FBLIM1	54751	broad.mit.edu	37	chr1	16101240	16101240	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgcattggggatgagaGctttgccctgggcagccaga	16	10	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16101240	T	T	16101240	3	4	215	1	0	0	0	0	1	0	0	0	5754	971	34	3	857	3	FBLIM1	1	16101240	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	4391398	16101240	233149381	4	167406											
NBPF1	55672	broad.mit.edu	37	chr1	16918548	16918548	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcagaagaggtggagccaGggactggggagaagaaaccc	18	7	0	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16918548	C	C	16918548	1	2	215	0	1	0	0	0	0	0	0	0	10286	1015	35	4		4	NBPF1	1	16918548	5'UTR	SNP	G	TCGA-75-5146-01A-01D-1625-08	817308	16918548	232332073	5	167407											
EPHB2	2048	broad.mit.edu	37	chr1	23219338	23219338	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctctggacccactatgaGccacaacctcactaattttc	7	14	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23219338	T	T	23219338	1	4	215	0	1	0	0	0	0	0	0	0	5217	986	34	3		3	EPHB2	1	23219338	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	6300790	23219338	226031283	6	167408											
GRHL3	57822	broad.mit.edu	37	chr1	24669281	24669281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtcagtggggatccagggCctgggtgggctcggctggcg	21	9	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24669281	A	A	24669281	1	1	215	0	1	0	0	0	0	0	0	0	6831	754	26	3		3	GRHL3	1	24669281	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1449943	24669281	224581340	7	167409											
MAN1C1	57134	broad.mit.edu	37	chr1	26077525	26077525	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttccatccatctttccttCcgttcttccttccttctatc	1	18	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26077525	T	T	26077525	1	4	215	0	1	0	0	0	0	0	0	0	9305	870	30	4		4	MAN1C1	1	26077525	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1408244	26077525	223173096	8	167410											
SFRS4	6429	broad.mit.edu	37	chr1	29486795	29486795	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaatagcttaaacatcaaTacgtttaaatgtaatatcaa	3	6	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29486795	C	C	29486795	1	2	215	0	1	0	0	0	0	0	0	0	14292	1421	49	5		5	SFRS4	1	29486795	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	3409270	29486795	219763826	9	167411											
GRIK3	2899	broad.mit.edu	37	chr1	37338051	37338051	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacttggacttgtgtgcaCacacatgcccatggccacag	9	14	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37338051	A	A	37338051	1	1	215	0	1	0	0	0	0	0	0	0	6841	493	17	3		3	GRIK3	1	37338051	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	7851256	37338051	211912570	10	167412											
KLF17	128209	broad.mit.edu	37	chr1	44596043	44596043	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaagatgactggggcgGgcactcctgattgtgttgcc	15	10	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44596043	T	T	44596043	1	4	215	0	1	0	0	0	0	0	0	0	8416	1247	43	2		2	KLF17	1	44596043	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	7257992	44596043	204654578	11	167413											
DEPDC1	55635	broad.mit.edu	37	chr1	68954074	68954074	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctgatttgttttgtagtAtaactactccacgtttactt	5	8	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68954074	G	G	68954074	3	3	215	1	0	0	0	0	1	0	0	0	4479	449	16	5	1763	5	DEPDC1	1	68954074	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	24358031	68954074	180296547	12	167414											
C1orf173	127254	broad.mit.edu	37	chr1	75037052	75037052	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctctgacccttcctcttGctcctgtcctagccctgagg	8	18	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75037052	T	T	75037052	3	4	215	1	0	0	0	0	1	0	0	0	2034	1328	46	3	254	3	C1orf173	1	75037052	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	6082978	75037052	174213569	13	167415											
C1orf173	127254	broad.mit.edu	37	chr1	75078489	75078489	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttttggaaataaactgaaaGgtctctggaattaaaataga	8	4	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75078489	C	C	75078489	2	2	215	1	0	0	0	0	0	0	0	1	2034	987	35	4		4	C1orf173	1	75078489	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	41437	75078489	174172132	14	167416											
SLC44A5	204962	broad.mit.edu	37	chr1	76107465	76107465	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtccagtggaaatcctTtagagtgcaaagaaaaaaga	9	6	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76107465	A	A	76107465	1	1	215	0	1	0	0	0	0	0	0	0	14753	1856	64	5		5	SLC44A5	1	76107465	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	1028976	76107465	173143156	15	167417											
TTLL7	79739	broad.mit.edu	37	chr1	84403666	84403666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctcattatgcttgttcaCggagtagtttgtcagatgca	10	7	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84403666	A	A	84403666	3	1	215	1	0	0	0	0	1	0	0	0	16858	536	19	3	1962	3	TTLL7	1	84403666	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	8296201	84403666	164846955	16	167418											
FRRS1	391059	broad.mit.edu	37	chr1	100185118	100185118	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagaaggagtacagaatgGgatcctcctatgttctttgg	11	7	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100185118	A	A	100185118	2	1	215	1	0	0	0	0	0	0	0	1	6120	1219	43	4		4	FRRS1	1	100185118	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	15781452	100185118	149065503	17	167419											
DBT	1629	broad.mit.edu	37	chr1	100672123	100672123	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcaaatatagagcagatctGaacatttttcacattaggga	8	6	3	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100672123	A	A	100672123	4	1	215	1	0	0	0	0	0	1	0	0	4291	1299	45	4	373	4	DBT	1	100672123	Nonsense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	487005	100672123	148578498	18	167420											
OLFM3	118427	broad.mit.edu	37	chr1	102269750	102269750	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggggtcttatagagtttatCacaaatcacactgtttaaat	7	6	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102269750	A	A	102269750	1	1	215	0	1	0	0	0	0	0	0	0	10949	841	29	3		3	OLFM3	1	102269750	3'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	1597627	102269750	146980871	19	167421											
GSTM3	2947	broad.mit.edu	37	chr1	110279825	110279825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccaaatcttataacgacCccaacccagtccaacagatg	4	15	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110279825	A	A	110279825	1	1	215	0	1	0	0	0	0	0	0	0	6905	638	22	2		2	GSTM3	1	110279825	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	8010075	110279825	138970796	20	167422											
ADORA3	140	broad.mit.edu	37	chr1	112028521	112028521	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgcctattgattctcaGctctggatccctttttctgg	7	11	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112028521	T	T	112028521	1	4	215	0	1	0	0	0	0	0	0	0	329	986	34	3		3	ADORA3	1	112028521	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1748696	112028521	137222100	21	167423											
AMPD1	270	broad.mit.edu	37	chr1	115215953	115215953	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccctggtatagacaatAattgcattctttacaaaaat	4	8	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115215953	T	T	115215953	1	4	215	0	1	0	0	0	0	0	0	0	585	377	13	5		5	AMPD1	1	115215953	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	3187432	115215953	134034668	22	167424											
SYCP1	6847	broad.mit.edu	37	chr1	115418714	115418714	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgataacagcttttgaggaaCttcgtgtgcaagctgagaat	11	6	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115418714	G	G	115418714	3	3	215	1	0	0	0	0	1	0	0	0	15550	565	20	4	716	4	SYCP1	1	115418714	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	202761	115418714	133831907	23	167425											
TSHB	7252	broad.mit.edu	37	chr1	115576322	115576322	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaatctactcagcacaaTggatacgcataattttataa	6	7	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115576322	A	A	115576322	1	1	215	0	1	0	0	0	0	0	0	0	16746	1479	51	5		5	TSHB	1	115576322	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	157608	115576322	133674299	24	167426											
CD58	965	broad.mit.edu	37	chr1	117076673	117076673	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatttttagcagcttccacGaaatctgaaggaaccccatc	7	12	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117076673	A	A	117076673	1	1	215	0	1	0	0	0	0	0	0	0	3055	1073	37	4		4	CD58	1	117076673	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1500351	117076673	132173948	25	167427											
SPAG17	200162	broad.mit.edu	37	chr1	118496508	118496508	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttggcactctattcgcacGtctttattaaacagattgaa	6	8	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118496508	A	A	118496508	1	1	215	0	1	0	0	0	0	0	0	0	15095	1160	40	4		4	SPAG17	1	118496508	3'UTR	SNP	G	TCGA-75-5146-01A-01D-1625-08	1419835	118496508	130754113	26	167428											
PDE4DIP	9659	broad.mit.edu	37	chr1	144877096	144877096	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgggcgagttgctcccGgaagctctgtcccaggtagt	13	13	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144877096	T	T	144877096	2	4	215	1	0	0	0	0	0	0	0	1	11737	1115	39	1		1	PDE4DIP	1	144877096	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	26380588	144877096	104373525	27	167429											
NUDT17	200035	broad.mit.edu	37	chr1	145586946	145586946	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcttccatcctcctctaGttccactgcactgcatggtg	8	15	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145586946	T	T	145586946	3	4	215	1	0	0	0	0	1	0	0	0	10829	1020	36	3	252	3	NUDT17	1	145586946	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	709850	145586946	103663675	28	167430											
FLG2	388698	broad.mit.edu	37	chr1	152328737	152328737	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattgtcctgagacagaccCatgctgtccaaagccagagg	12	11	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152328737	T	T	152328737	3	4	215	1	0	0	0	0	1	0	0	0	5980	594	21	4	5654	4	FLG2	1	152328737	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	6741791	152328737	96921884	29	167431											
PFDN2	5202	broad.mit.edu	37	chr1	161087769	161087769	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggacaccgcccccttcccCgcgccgctcccgctgctctt	9	23	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161087769	A	A	161087769	2	1	215	1	0	0	0	0	0	0	0	1	11851	639	23	1		1	PFDN2	1	161087769	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	8759032	161087769	88162852	30	167432											
RCSD1	92241	broad.mit.edu	37	chr1	167659257	167659257	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actttcctcaccttacttatCtggttgttttggttgatttg	7	8	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167659257	A	A	167659257	1	1	215	0	1	0	0	0	0	0	0	0	13293	928	32	3		3	RCSD1	1	167659257	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	6571488	167659257	81591364	31	167433											
SERPINC1	462	broad.mit.edu	37	chr1	173886421	173886421	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctaatcttccacagggctGggcaagtggagatagtgtga	14	8	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173886421	T	T	173886421	1	4	215	0	1	0	0	0	0	0	0	0	14222	1363	47	2		2	SERPINC1	1	173886421	5'UTR	SNP	G	TCGA-75-5146-01A-01D-1625-08	6227164	173886421	75364200	32	167434											
TNN	63923	broad.mit.edu	37	chr1	175049664	175049664	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgccttgattaggggtttGaaaaacacacctgccacaat	9	9	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175049664	A	A	175049664	1	1	215	0	1	0	0	0	0	0	0	0	16446	1305	45	4		4	TNN	1	175049664	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1163243	175049664	74200957	33	167435											
TNR	7143	broad.mit.edu	37	chr1	175375219	175375219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttttttcctttgaccgtGtgaagagatgccggggtttt	11	8	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175375219	T	T	175375219	1	4	215	0	1	0	0	0	0	0	0	0	16461	1392	48	3		3	TNR	1	175375219	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	325555	175375219	73875402	34	167436											
PAPPA2	60676	broad.mit.edu	37	chr1	176668286	176668286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcttacaggcctggagcCctgaggtccacctgtaccac	10	15	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176668286	A	A	176668286	3	1	215	1	0	0	0	0	1	0	0	0	11527	623	22	2	2876	2	PAPPA2	1	176668286	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	1293067	176668286	72582335	35	167437											
CACNA1E	777	broad.mit.edu	37	chr1	181702858	181702858	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgccatccccgacgtggaCcccttggtggactcaaccgt	11	16	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181702858	T	T	181702858	2	4	215	1	0	0	0	0	0	0	0	1	2568	506	18	4		4	CACNA1E	1	181702858	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	5034572	181702858	67547763	36	167438											
HMCN1	83872	broad.mit.edu	37	chr1	186114801	186114801	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccttaaaatgaaagttGtataggcaggggcaccccaa	10	9	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186114801	T	T	186114801	1	4	215	0	1	0	0	0	0	0	0	0	7287	1392	48	3		3	HMCN1	1	186114801	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	4411943	186114801	63135820	37	167439											
ASPM	259266	broad.mit.edu	37	chr1	197070841	197070841	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagctctatatgttcgatAatgttgctgaattagaattg	9	5	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197070841	T	T	197070841	3	4	215	1	0	0	0	0	1	0	0	0	1060	362	13	5	2937	5	ASPM	1	197070841	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	10956040	197070841	52179780	38	167440											
CRB1	23418	broad.mit.edu	37	chr1	197390533	197390533	+	Frame_Shift_Del	DEL	C	-	-													ccaatggctcttctacttttCcgaagcaacagggatgtgtt							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197390533	-	-	197390533	7	5	215	1	0	1	0	1	0	0	0	0	3880	854	30	0	1597	0	CRB1	1	197390533	Frame_Shift_Del	DEL	C	TCGA-75-5146-01A-01D-1625-08	319692	197390533	51860088	39	167441											
FAM72A	729533	broad.mit.edu	37	chr1	206141344	206141344	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttagcacatctgctctgcaCacataaaacttgttaagttg	6	9	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206141344	T	T	206141344	1	4	215	0	1	0	0	0	0	0	0	0	5665	493	17	4		4	FAM72A	1	206141344	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	8750811	206141344	43109277	40	167442											
PIGR	5284	broad.mit.edu	37	chr1	207105801	207105801	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtatcccagggactcacCgacgttcttcctgtgccggg	13	13	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207105801	T	T	207105801	3	4	215	1	0	0	0	0	1	0	0	0	11992	666	23	4	302	4	PIGR	1	207105801	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	964457	207105801	42144820	41	167443											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209936096	209936096	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaatggagagtccctgtcCctccccacttccctcacttc	7	18	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209936096	A	A	209936096	1	1	215	0	1	0	0	0	0	0	0	0	16566	638	22	2		2	TRAF3IP3	1	209936096	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	2830295	209936096	39314525	42	167444											
USH2A	7399	broad.mit.edu	37	chr1	216462704	216462704	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctatggccgaaggatctGcaccaacttgtcggaaaaag	10	10	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216462704	T	T	216462704	3	4	215	1	0	0	0	0	1	0	0	0	17162	1319	46	3	13981	3	USH2A	1	216462704	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	6526608	216462704	32787917	43	167445											
USH2A	7399	broad.mit.edu	37	chr1	216538451	216538451	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagaaattaccaccattatTagtttaagtgcataaacttt	4	6	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	216538451	C	C	216538451	1	2	215	0	1	0	0	0	0	0	0	0	17162	1769	61	5		5	USH2A	1	216538451	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	75747	216538451	32712170	44	167446											
SPATA17	128153	broad.mit.edu	37	chr1	217856816	217856816	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttagatggagtcttgctcTgttgcccagtctggagtgca	12	8	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217856816	A	A	217856816	1	1	215	0	1	0	0	0	0	0	0	0	15118	1595	55	5		5	SPATA17	1	217856816	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	1318365	217856816	31393805	45	167447											
FAM177B	400823	broad.mit.edu	37	chr1	222923324	222923324	+	Frame_Shift_Del	DEL	A	-	-													ggcagctgaggttcctaatgAaaagtgtcacttggaggctg							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	222923324	-	-	222923324	7	5	215	1	0	1	0	1	0	0	0	0	5547	246	9	0	415	0	FAM177B	1	222923324	Frame_Shift_Del	DEL	A	TCGA-75-5146-01A-01D-1625-08	5066508	222923324	26327297	46	167448											
ACTN2	88	broad.mit.edu	37	chr1	236918313	236918313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcttgctcactcgccccCctcaggagattgcccggagc	10	17	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236918313	A	A	236918313	1	1	215	0	1	0	0	0	0	0	0	0	205	638	22	2		2	ACTN2	1	236918313	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	13994989	236918313	12332308	47	167449											
PLD5	200150	broad.mit.edu	37	chr1	242253245	242253245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaggcttgagcagttcgGctgtttggttggctgtaagg	16	6	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242253245	T	T	242253245	3	4	215	1	0	0	0	0	1	0	0	0	12144	1203	42	3	92	3	PLD5	1	242253245	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	5334932	242253245	6997376	48	167450											
ZNF670	93474	broad.mit.edu	37	chr1	247201596	247201596	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacatatgaagacttttcCacacacactgcattcacatg	5	11	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247201596	A	A	247201596	4	1	215	1	0	0	0	0	0	1	0	0	18204	603	21	2	848	2	ZNF670	1	247201596	Nonsense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	4948351	247201596	2049025	49	167451											
OR2T1	26696	broad.mit.edu	37	chr1	248569559	248569559	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatcatcttcttcaccgcActgatggccaatggggttat	8	11	5	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	248569559	G	G	248569559	2	3	215	1	0	0	0	0	0	0	0	1	11110	146	6	5		5	OR2T1	1	248569559	Silent	SNP	A	TCGA-75-5146-01A-01D-1625-08	1367963	248569559	681062	50	167452											
OR2T27	403239	broad.mit.edu	37	chr1	248813976	248813976	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtggaaatatacaggatGtccctgagggagagctggct	15	6	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248813976	T	T	248813976	3	4	215	1	0	0	0	0	1	0	0	0	11115	1368	48	3	746	3	OR2T27	1	248813976	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	244417	248813976	436645	51	167453											
PXDN	7837	broad.mit.edu	37	chr2	1680744	1680744	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttggggttgccttcggctCtgcaggtgaagtacacggtg	16	9	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1680744	G	G	1680744	3	3	215	1	0	0	0	0	1	0	0	0	12955	913	32	4	3700	4	PXDN	2	1680744	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08		1680744	241518629	52	167454											
MYT1L	23040	broad.mit.edu	37	chr2	1842936	1842936	+	Frame_Shift_Del	DEL	A	-	-													ctcacctgcggtgtgtgaggAagctgccgctgacgtggcct							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1842936	-	-	1842936	7	5	215	1	0	1	0	1	0	0	0	0	10201	246	9	0	515	0	MYT1L	2	1842936	Frame_Shift_Del	DEL	A	TCGA-75-5146-01A-01D-1625-08	162192	1842936	241356437	53	167455											
APOB	338	broad.mit.edu	37	chr2	21257763	21257763	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacttgtgctaccatccCatacttattcctggtaacca	5	13	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21257763	T	T	21257763	3	4	215	1	0	0	0	0	1	0	0	0	787	594	21	4	12950	4	APOB	2	21257763	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	19414827	21257763	221941610	54	167456											
TMEM214	54867	broad.mit.edu	37	chr2	27258722	27258722	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaacactttttggaaagtgTggaggaagttaggagtcagt	13	3	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27258722	A	A	27258722	1	1	215	0	1	0	0	0	0	0	0	0	16260	1711	59	5		5	TMEM214	2	27258722	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	6000959	27258722	215940651	55	167457											
CAD	790	broad.mit.edu	37	chr2	27463992	27463993	+	Frame_Shift_Del	DEL	AG	-	-													accgagacaggcatctccccAgaacctggggacccctggct							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27463993	-	-	27463992	7	5	215	1	0	1	0	1	0	0	0	0	2591	188	7	0	5851	0	CAD	2	27463992	Frame_Shift_Del	DEL	AG	TCGA-75-5146-01A-01D-1625-08	205270	27463992	215735381	56	167458											
ZNF513	130557	broad.mit.edu	37	chr2	27602879	27602879	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggttgtggcaggaaatggTgttctgttcacctaacctgc	12	9	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27602879	G	G	27602879	1	3	215	0	1	0	0	0	0	0	0	0	18085	1711	59	5		5	ZNF513	2	27602879	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	138887	27602879	215596494	57	167459											
GCKR	2646	broad.mit.edu	37	chr2	27729531	27729531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgagacatgttaacaCggtatgggcgataggattgc	13	7	1	1	rs2032971		TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27729531	A	A	27729531	1	1	215	0	1	0	0	0	0	0	0	0	6356	551	19	3		3	GCKR	2	27729531	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	126652	27729531	215469842	58	167460											
EHD3	30845	broad.mit.edu	37	chr2	31467366	31467366	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctctcttttcttcttgGggtatggggagtgaaagaac	14	6	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31467366	T	T	31467366	1	4	215	0	1	0	0	0	0	0	0	0	5019	1247	43	2		2	EHD3	2	31467366	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	3737835	31467366	211732007	59	167461											
XDH	7498	broad.mit.edu	37	chr2	31589514	31589514	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attatgacaacccacccaggCcccattttataaatgagaaa	5	11	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31589514	T	T	31589514	1	4	215	0	1	0	0	0	0	0	0	0	17553	754	26	4		4	XDH	2	31589514	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	122148	31589514	211609859	60	167462											
EML4	27436	broad.mit.edu	37	chr2	42531615	42531615	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tccccaacagctgtctgtctCttttctaggaaccaggacac	7	14	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42531615	G	G	42531615	1	3	215	0	1	0	0	0	0	0	0	0	5141	928	32	4		4	EML4	2	42531615	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	10942101	42531615	200667758	61	167463											
FSHR	2492	broad.mit.edu	37	chr2	49190832	49190832	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgatgttcccagtgatGgccaggatgctgataaacca	10	9	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49190832	T	T	49190832	2	4	215	1	0	0	0	0	0	0	0	1	6133	1335	47	2		2	FSHR	2	49190832	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	6659217	49190832	194008541	62	167464											
FSHR	2492	broad.mit.edu	37	chr2	49295498	49295498	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aattgagttgctaatgtattCatatcagcaaacagttacca	6	7	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49295498	G	G	49295498	1	3	215	0	1	0	0	0	0	0	0	0	6133	841	29	4		4	FSHR	2	49295498	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	104666	49295498	193903875	63	167465											
MDH1	4190	broad.mit.edu	37	chr2	63831786	63831786	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggtcccaattggaaataAaaaccatttgtctcagtaat	6	8	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63831786	G	G	63831786	1	3	215	0	1	0	0	0	0	0	0	0	9501	29	1	5		5	MDH1	2	63831786	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	14536288	63831786	179367587	64	167466											
SFXN5	94097	broad.mit.edu	37	chr2	73226176	73226176	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagaatttcaggcctgctGggtgcccaaagctcccatac	11	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73226176	T	T	73226176	1	4	215	0	1	0	0	0	0	0	0	0	14311	1363	47	2		2	SFXN5	2	73226176	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	9394390	73226176	169973197	65	167467											
WBP1	23559	broad.mit.edu	37	chr2	74687010	74687010	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcttgcagggttctggctGctctggactgtcctcatcct	10	14	4	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74687010	C	C	74687010	2	2	215	1	0	0	0	0	0	0	0	1	17384	1306	46	4		4	WBP1	2	74687010	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	1460834	74687010	168512363	66	167468											
RMND5A	64795	broad.mit.edu	37	chr2	87365604	87365604	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcttctttgttacctgcTaactaggccgtgcttcctcc	8	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87365604	C	C	87365604	1	2	215	0	1	0	0	0	0	0	0	0	13508	1537	53	5		5	RMND5A	2	87365604	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	12678594	87365604	155833769	67	167469											
TMEM131	23505	broad.mit.edu	37	chr2	98443832	98443832	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagccgaaaaaggcagcagCgaaggataaatcttcagaca	10	8	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98443832	A	A	98443832	1	1	215	0	1	0	0	0	0	0	0	0	16167	783	27	3		3	TMEM131	2	98443832	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	11078228	98443832	144755541	68	167470											
EIF5B	9669	broad.mit.edu	37	chr2	100010936	100010941	+	Intron	DEL	ACATAC	-	-													tgccatcgccattacctgatAcatacagataaacatggaaa							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100010941	-	-	100010936	6	5	215	0	1	1	0	1	0	0	0	0	5086	406	14	0		0	EIF5B	2	100010936	Intron	DEL	ACATAC	TCGA-75-5146-01A-01D-1625-08	1567104	100010936	143188437	69	167471											
ANAPC1	64682	broad.mit.edu	37	chr2	112592101	112592101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacttatttacaaggtcccTatatgatacaaggttcctat	5	8	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112592101	A	A	112592101	1	1	215	0	1	0	0	0	0	0	0	0	598	1537	53	5		5	ANAPC1	2	112592101	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	12581165	112592101	130607272	70	167472											
INSIG2	51141	broad.mit.edu	37	chr2	118854157	118854157	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaaggagagacagagtcaCctgggcccaaaaagtgtggc	14	9	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118854157	T	T	118854157	3	4	215	1	0	0	0	0	1	0	0	0	7836	507	18	4	27	4	INSIG2	2	118854157	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	6262056	118854157	124345216	71	167473											
CLASP1	23332	broad.mit.edu	37	chr2	122165204	122165204	+	Frame_Shift_Del	DEL	G	-	-													attcctggagccatatgagcGctcagagcaaacacttgagg							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	122165204	-	-	122165204	7	5	215	1	0	1	0	1	0	0	0	0	3485	1087	38	0	2164	0	CLASP1	2	122165204	Frame_Shift_Del	DEL	G	TCGA-75-5146-01A-01D-1625-08	3311047	122165204	121034169	72	167474											
MYO7B	4648	broad.mit.edu	37	chr2	128339427	128339427	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgctgggccaggccctGctccacaggtgcgacgcagc	15	14	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128339427	A	A	128339427	1	1	215	0	1	0	0	0	0	0	0	0	10177	1334	46	4		4	MYO7B	2	128339427	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	6174223	128339427	114859946	73	167475											
UGGT1	56886	broad.mit.edu	37	chr2	128913089	128913089	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttgtggatgattatgctAgatttactatcttggattcc	8	6	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128913089	G	G	128913089	3	3	215	1	0	0	0	0	1	0	0	0	17067	412	15	5	2242	5	UGGT1	2	128913089	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	573662	128913089	114286284	74	167476											
LCT	3938	broad.mit.edu	37	chr2	136594073	136594073	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgaaggttgccgagggGtcaccatcaggtcaatgtgt	15	7	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136594073	T	T	136594073	1	4	215	0	1	0	0	0	0	0	0	0	8765	1276	44	3		3	LCT	2	136594073	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	7680984	136594073	106605300	75	167477											
LRP1B	53353	broad.mit.edu	37	chr2	141091946	141091946	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatacttatattgccaaCaacactagaaataactgtta	3	7	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141091946	A	A	141091946	1	1	215	0	1	0	0	0	0	0	0	0	9042	493	17	3		3	LRP1B	2	141091946	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	4497873	141091946	102107427	76	167478											
LRP1B	53353	broad.mit.edu	37	chr2	141274656	141274656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagataaatcattaatactcCctaaactgaaagagataaat	4	6	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141274656	A	A	141274656	1	1	215	0	1	0	0	0	0	0	0	0	9042	638	22	2		2	LRP1B	2	141274656	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	182710	141274656	101924717	77	167479											
LRP1B	53353	broad.mit.edu	37	chr2	141946239	141946239	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagtgtttccaaaccatcAtagaggacatttcaaaagta	6	7	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141946239	G	G	141946239	1	3	215	0	1	0	0	0	0	0	0	0	9042	232	8	5		5	LRP1B	2	141946239	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	671583	141946239	101253134	78	167480											
UPP2	151531	broad.mit.edu	37	chr2	158922386	158922386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattgcaggccttgggagaGctccagtacttgttgcccta	12	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158922386	T	T	158922386	1	4	215	0	1	0	0	0	0	0	0	0	17139	986	34	3		3	UPP2	2	158922386	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	16976147	158922386	84276987	79	167481											
KCNH7	90134	broad.mit.edu	37	chr2	163256864	163256864	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaacctttacttgcccCccgaaaggctttgcagtttt	8	12	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	163256864	A	A	163256864	3	1	215	1	0	0	0	0	1	0	0	0	8107	623	22	2	1376	2	KCNH7	2	163256864	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	4334478	163256864	79942509	80	167482											
COL5A2	1290	broad.mit.edu	37	chr2	189921588	189921588	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgccattattctccaactCctgactaccaaggaaacatg	5	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189921588	A	A	189921588	1	1	215	0	1	0	0	0	0	0	0	0	3729	870	30	3		3	COL5A2	2	189921588	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	26664724	189921588	53277785	81	167483											
DNAH7	56171	broad.mit.edu	37	chr2	196750942	196750942	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaatcatccataaaacagtCtattagattcattaaggacc	4	8	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196750942	A	A	196750942	3	1	215	1	0	0	0	0	1	0	0	0	4646	913	32	3	6741	3	DNAH7	2	196750942	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	6829354	196750942	46448431	82	167484											
ANKRD44	91526	broad.mit.edu	37	chr2	197964625	197964625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatggagaggagtgttgcCgtccttatccacacagtcaa	10	11	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197964625	A	A	197964625	3	1	215	1	0	0	0	0	1	0	0	0	672	652	23	1	1887	1	ANKRD44	2	197964625	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	1213683	197964625	45234748	83	167485											
CDK15	65061	broad.mit.edu	37	chr2	202755504	202755504	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttctctcttttcattcctAcagaggagtctttgtttaca	6	10	4	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202755504	T	T	202755504	1	4	215	0	1	0	0	0	0	0	0	0	3161	406	14	5		5	CDK15	2	202755504	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	4790879	202755504	40443869	84	167486											
DOCK10	55619	broad.mit.edu	37	chr2	225739438	225739438	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgtttcctctggcgtgCattcacaagttacagaatta	7	9	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	225739438	A	A	225739438	3	1	215	1	0	0	0	0	1	0	0	0	4725	710	25	3	5790	3	DOCK10	2	225739438	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	22983934	225739438	17459935	85	167487											
IQCA1	79781	broad.mit.edu	37	chr2	237415899	237415899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggagcccatcacttaCgcgttcgacattgctggcta	12	12	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237415899	A	A	237415899	1	1	215	0	1	0	0	0	0	0	0	0	7872	550	19	3		3	IQCA1	2	237415899	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	11676461	237415899	5783474	86	167488											
MLPH	79083	broad.mit.edu	37	chr2	238443296	238443296	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcccttggccaaggtaacActgggggctgggcaaagaga	14	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238443296	T	T	238443296	1	4	215	0	1	0	0	0	0	0	0	0	9726	174	6	5		5	MLPH	2	238443296	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	1027397	238443296	4756077	87	167489											
TRAF3IP1	26146	broad.mit.edu	37	chr2	239257309	239257309	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattacaaatgtatttgattGcaaataactgcaaatacaga	5	5	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239257309	A	A	239257309	1	1	215	0	1	0	0	0	0	0	0	0	16564	1334	46	4		4	TRAF3IP1	2	239257309	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	814013	239257309	3942064	88	167490											
CHL1	10752	broad.mit.edu	37	chr3	418010	418010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatgtgacagaattatcCaggcttcatgttcaaatgca	8	8	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	418010	A	A	418010	1	1	215	0	1	0	0	0	0	0	0	0	3380	609	21	2		2	CHL1	3	418010	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08		418010	197604420	89	167491											
LRIG1	26018	broad.mit.edu	37	chr3	66465421	66465422	+	Frame_Shift_Ins	INS	-	A	A													tgctcaggcgaagagttagcINSagcgaccgtgacagaccatc							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66465422	A	A	66465421	7	5	215	1	0	1	1	0	0	0	0	0	9031	697	25	0	2771	0	LRIG1	3	66465421	Frame_Shift_Ins	INS	-	TCGA-75-5146-01A-01D-1625-08	66047411	66465421	131557009	90	167492											
KIAA1524	57650	broad.mit.edu	37	chr3	108279759	108279759	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggcagacttagtgcagaaTtagggaatttttaagaatgg	12	3	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108279759	A	A	108279759	1	1	215	0	1	0	0	0	0	0	0	0	8309	1508	52	5		5	KIAA1524	3	108279759	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	41814338	108279759	89742671	91	167493											
MYLK	4638	broad.mit.edu	37	chr3	123419547	123419547	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggttggcacggaaatccAtctgctcggctgggatctcc	13	12	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123419547	G	G	123419547	3	3	215	1	0	0	0	0	1	0	0	0	10150	217	8	5	3044	5	MYLK	3	123419547	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	15139788	123419547	74602883	92	167494											
SLC9A9	285195	broad.mit.edu	37	chr3	143567219	143567219	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggataaaggctattttatCaagatttgcctaagacagtc	8	7	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143567219	T	T	143567219	1	4	215	0	1	0	0	0	0	0	0	0	14835	841	29	4		4	SLC9A9	3	143567219	5'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	20147672	143567219	54455211	93	167495											
SI	6476	broad.mit.edu	37	chr3	164780204	164780204	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctggtgtatctcctagaagGatgtaaaaatccagaatgcc	9	8	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164780204	T	T	164780204	2	4	215	1	0	0	0	0	0	0	0	1	14410	1164	41	3		3	SI	3	164780204	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	21212985	164780204	33242226	94	167496											
ZBBX	79740	broad.mit.edu	37	chr3	167045964	167045964	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtatttacccacaaaaatTgttttaataaaaaaattctg	3	6	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167045964	C	C	167045964	1	2	215	0	1	0	0	0	0	0	0	0	17643	1827	63	5		5	ZBBX	3	167045964	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	2265760	167045964	30976466	95	167497											
NLGN1	22871	broad.mit.edu	37	chr3	173997044	173997044	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactttgctgtttcaaattTtgttgataatttatatggat	7	3	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173997044	G	G	173997044	3	3	215	1	0	0	0	0	1	0	0	0	10556	1841	64	5	1267	5	NLGN1	3	173997044	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	6951080	173997044	24025386	96	167498											
UTS2D	257313	broad.mit.edu	37	chr3	190993099	190993099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcataggacgtctcagaatcCttctcctccactagctgttc	7	14	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190993099	A	A	190993099	3	1	215	1	0	0	0	0	1	0	0	0	17232	680	24	2	91	2	UTS2D	3	190993099	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	16996055	190993099	7029331	97	167499											
NCBP2	22916	broad.mit.edu	37	chr3	196664343	196664343	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcattgtgactggaatcCcaggcaatggctgagcccag	12	11	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196664343	G	G	196664343	1	3	215	0	1	0	0	0	0	0	0	0	10307	638	22	4		4	NCBP2	3	196664343	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	5671244	196664343	1358087	98	167500											
SH3BP2	6452	broad.mit.edu	37	chr4	2834061	2834061	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgtcttattttaggttGttcaaggctacaagcccccg	9	10	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2834061	T	T	2834061	3	4	215	1	0	0	0	0	1	0	0	0	14358	1368	48	3	1707	3	SH3BP2	4	2834061	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08		2834061	188320215	99	167501											
TBC1D14	57533	broad.mit.edu	37	chr4	7006648	7006648	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggctctgaagtggagaacGaaggtagaatgtcttctaaa	13	5	3	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7006648	T	T	7006648	4	4	215	1	0	0	0	0	0	1	0	0	15722	1059	37	3	1381	3	TBC1D14	4	7006648	Nonsense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	4172587	7006648	184147628	100	167502											
SLIT2	9353	broad.mit.edu	37	chr4	20493522	20493522	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagagaccatcacagaaaTgtatgtgcctgaaattcttt	7	9	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20493522	C	C	20493522	3	2	215	1	0	0	0	0	1	0	0	0	14854	1478	51	5	948	5	SLIT2	4	20493522	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	13486874	20493522	170660754	101	167503											
TBC1D19	55296	broad.mit.edu	37	chr4	26685161	26685161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatctactattagtcagGcatgagggttatagtagtgc	11	6	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26685161	T	T	26685161	1	4	215	0	1	0	0	0	0	0	0	0	15726	1218	42	3		3	TBC1D19	4	26685161	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	6191639	26685161	164469115	102	167504											
ARAP2	116984	broad.mit.edu	37	chr4	36230472	36230472	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaaagaaaggcattcagagtCtgcattagggagcttactga	11	6	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36230472	A	A	36230472	3	1	215	1	0	0	0	0	1	0	0	0	841	913	32	3	4605	3	ARAP2	4	36230472	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	9545311	36230472	154923804	103	167505											
TBC1D1	23216	broad.mit.edu	37	chr4	38091623	38091623	+	Frame_Shift_Del	DEL	C	-	-													tgtgaagatgggccctttggCcccccaccagaggaaaagaa							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38091623	-	-	38091623	7	5	215	1	0	1	0	1	0	0	0	0	15716	726	26	0	2167	0	TBC1D1	4	38091623	Frame_Shift_Del	DEL	C	TCGA-75-5146-01A-01D-1625-08	1861151	38091623	153062653	104	167506											
ATP10D	57205	broad.mit.edu	37	chr4	47538077	47538077	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatttgattatttgctgaCatcttttcagcaagatatta	5	5	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47538077	A	A	47538077	1	1	215	0	1	0	0	0	0	0	0	0	1122	493	17	3		3	ATP10D	4	47538077	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	9446454	47538077	143616199	105	167507											
PDGFRA	5156	broad.mit.edu	37	chr4	55140637	55140637	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacacagccacactaccttGctgcccctgtgcatgtctgc	8	16	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55140637	T	T	55140637	1	4	215	0	1	0	0	0	0	0	0	0	11755	1334	46	3		3	PDGFRA	4	55140637	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	7602560	55140637	136013639	106	167508											
LPHN3	23284	broad.mit.edu	37	chr4	62935842	62935842	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaggggcttctgaacaAtgccagggatacaagtgtca	12	8	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62935842	G	G	62935842	3	3	215	1	0	0	0	0	1	0	0	0	9004	101	4	5	3716	5	LPHN3	4	62935842	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	7795205	62935842	128218434	107	167509											
EPHA5	2044	broad.mit.edu	37	chr4	66439243	66439243	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaagccaagaagactgatGctggtggcaaggtgaaaaag	14	7	0	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66439243	T	T	66439243	1	4	215	0	1	0	0	0	0	0	0	0	5212	1334	46	3		3	EPHA5	4	66439243	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	3503401	66439243	124715033	108	167510											
COX18	285521	broad.mit.edu	37	chr4	73930654	73930654	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaataaaacaatagaagtcCtaaaaatagcagagaaaaat	5	4	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73930654	A	A	73930654	1	1	215	0	1	0	0	0	0	0	0	0	3799	696	24	2		2	COX18	4	73930654	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	7491411	73930654	117223622	109	167511											
ANKRD17	26057	broad.mit.edu	37	chr4	73964753	73964753	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaagggagctgccaagaCccggaaaaccaccacaactc	8	14	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73964753	T	T	73964753	1	4	215	0	1	0	0	0	0	0	0	0	646	522	18	4		4	ANKRD17	4	73964753	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	34099	73964753	117189523	110	167512											
FRAS1	80144	broad.mit.edu	37	chr4	79443999	79443999	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcctccatgggtagagctGaatggttttccatttctttc	10	9	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79443999	T	T	79443999	1	4	215	0	1	0	0	0	0	0	0	0	6102	1305	45	3		3	FRAS1	4	79443999	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	5479246	79443999	111710277	111	167513											
FSTL5	56884	broad.mit.edu	37	chr4	162421230	162421230	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattcacattctatgggttGtatcactttgattccatctt	5	8	4	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162421230	T	T	162421230	3	4	215	1	0	0	0	0	1	0	0	0	6140	1386	48	3	1167	3	FSTL5	4	162421230	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	82977231	162421230	28733046	112	167514											
ODZ3	55714	broad.mit.edu	37	chr4	183713936	183713936	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgtgatcaatgaaacGccactgcctattgatctgta	10	9	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183713936	T	T	183713936	2	4	215	1	0	0	0	0	0	0	0	1	10931	1074	38	3		3	ODZ3	4	183713936	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	21292706	183713936	7440340	113	167515											
SNX25	83891	broad.mit.edu	37	chr4	186272671	186272671	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagcccttctcctgactacCtcaaggttatcgacgtgcag	9	13	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186272671	G	G	186272671	3	3	215	1	0	0	0	0	1	0	0	0	15010	681	24	4	1932	4	SNX25	4	186272671	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	2558735	186272671	4881605	114	167516											
FAT1	2195	broad.mit.edu	37	chr4	187584546	187584546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgaatctggatcaaatgCctcgatctggaccacagata	9	11	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187584546	A	A	187584546	3	1	215	1	0	0	0	0	1	0	0	0	5746	739	26	3	10379	3	FAT1	4	187584546	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	1311875	187584546	3569730	115	167517											
TRIML1	339976	broad.mit.edu	37	chr4	189063558	189063558	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaatgagatcaaactgacCcagcaaatcagaagcctaag	7	10	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189063558	G	G	189063558	2	3	215	1	0	0	0	0	0	0	0	1	16675	610	22	4		4	TRIML1	4	189063558	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	1479012	189063558	2090718	116	167518											
PLEKHG4B	153478	broad.mit.edu	37	chr5	182169	182169	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctctgaccacgccgccCccttcaagcgaccacactcc	5	23	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182169	A	A	182169	3	1	215	1	0	0	0	0	1	0	0	0	12167	623	22	2	3617	2	PLEKHG4B	5	182169	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08		182169	180733091	117	167519											
DNAH5	1767	broad.mit.edu	37	chr5	13758948	13758948	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgccatgacaaagggCagttacctgcttttcagtca	9	12	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13758948	G	G	13758948	1	3	215	0	1	0	0	0	0	0	0	0	4644	725	25	4		4	DNAH5	5	13758948	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	13576779	13758948	167156312	118	167520											
CDH12	1010	broad.mit.edu	37	chr5	21760847	21760847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggactttacacagcaggctActaaatgtatttaatgaagc	8	7	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21760847	T	T	21760847	1	4	215	0	1	0	0	0	0	0	0	0	3128	406	14	5		5	CDH12	5	21760847	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	8001899	21760847	159154413	119	167521											
PRDM9	56979	broad.mit.edu	37	chr5	23524677	23524677	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaaggacaggaaagaaAgaattatcctagagaatttt	8	3	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23524677	T	T	23524677	1	4	215	0	1	0	0	0	0	0	0	0	12569	87	3	5		5	PRDM9	5	23524677	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	1763830	23524677	157390583	120	167522											
SPEF2	79925	broad.mit.edu	37	chr5	35771973	35771974	+	Intron	DNP	GG	TT	TT													cactaaaatactactcattaGgtttaaactagagacccggg							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	35771974	TT	TT	35771973	1	4	215	0	1	0	0	0	0	0	0	0	15153	1015	35	2		2	SPEF2	5	35771973	Intron	DNP	GG	TCGA-75-5146-01A-01D-1625-08	12247296	35771973	145143287	121	167523											
IL7R	3575	broad.mit.edu	37	chr5	35867591	35867591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgtatataaaagtatgGttgtcacttttgggctacct	9	5	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35867591	T	T	35867591	1	4	215	0	1	0	0	0	0	0	0	0	7775	1276	44	3		3	IL7R	5	35867591	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	95618	35867591	145047669	122	167524											
SKP2	6502	broad.mit.edu	37	chr5	36177275	36177275	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaatatcttttcttctgCcttcttaacagtgatagtgt	5	8	5	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36177275	T	T	36177275	1	4	215	0	1	0	0	0	0	0	0	0	14475	754	26	4		4	SKP2	5	36177275	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	309684	36177275	144737985	123	167525											
SLC1A3	6507	broad.mit.edu	37	chr5	36679962	36679962	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctggggacctcttcaaGgtatgtatgtatgtgtggaa	13	7	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36679962	T	T	36679962	3	4	215	1	0	0	0	0	1	0	0	0	14546	1014	35	2	1133	2	SLC1A3	5	36679962	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	502687	36679962	144235298	124	167526											
PAIP1	10605	broad.mit.edu	37	chr5	43547762	43547762	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaatctggtctccctcaagGagtagccactatccttgggc	10	12	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43547762	A	A	43547762	1	1	215	0	1	0	0	0	0	0	0	0	11490	1189	41	4		4	PAIP1	5	43547762	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	6867800	43547762	137367498	125	167527											
ITGA1	3672	broad.mit.edu	37	chr5	52214506	52214506	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcactttgcactcccaagttGatgacattcattaaatgtaa	5	9	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52214506	T	T	52214506	1	4	215	0	1	0	0	0	0	0	0	0	7942	1305	45	3		3	ITGA1	5	52214506	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	8666744	52214506	128700754	126	167528											
ANKRD55	79722	broad.mit.edu	37	chr5	55433219	55433219	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatggtcggattaacccatAcatgagctctccctgccaca	7	14	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55433219	G	G	55433219	1	3	215	0	1	0	0	0	0	0	0	0	681	406	14	5		5	ANKRD55	5	55433219	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	3218713	55433219	125482041	127	167529											
MAP1B	4131	broad.mit.edu	37	chr5	71491582	71491582	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcgctgcagctgtcggCactggagccaccacagcagc	13	15	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71491582	A	A	71491582	2	1	215	1	0	0	0	0	0	0	0	1	9320	697	25	3		3	MAP1B	5	71491582	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	16058363	71491582	109423678	128	167530											
MTX3	345778	broad.mit.edu	37	chr5	79279667	79279667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgctgtggcaccgcttaTgtggactgtggcctccccat	11	12	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79279667	C	C	79279667	1	2	215	0	1	0	0	0	0	0	0	0	10063	1479	51	5		5	MTX3	5	79279667	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	7788085	79279667	101635593	129	167531											
RASGRF2	5924	broad.mit.edu	37	chr5	80366447	80366447	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggagcatggtgaccagtcGtctgttctatggtggtgtct	14	7	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80366447	T	T	80366447	1	4	215	0	1	0	0	0	0	0	0	0	13181	1160	40	3		3	RASGRF2	5	80366447	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1086780	80366447	100548813	130	167532											
SLCO4C1	353189	broad.mit.edu	37	chr5	101592825	101592825	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaattgtatttacccattaTatgattcagatacaccagca	5	8	1	3	rs143134834		TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101592825	G	G	101592825	3	3	215	1	0	0	0	0	1	0	0	0	14844	1406	49	5	735	5	SLCO4C1	5	101592825	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	21226378	101592825	79322435	131	167533											
TRPC7	57113	broad.mit.edu	37	chr5	135549152	135549152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcccttgttcaccctcaGgtggtctttgtttaagttct	8	10	4	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135549152	T	T	135549152	3	4	215	1	0	0	0	0	1	0	0	0	16709	991	35	2	32	2	TRPC7	5	135549152	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	33956327	135549152	45366108	132	167534											
PCDHGB3	56102	broad.mit.edu	37	chr5	140751709	140751709	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggtgccgcgctctgcagAgcctggctacctggtgacca	13	13	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140751709	T	T	140751709	3	4	215	1	0	0	0	0	1	0	0	0	11658	304	11	5	1750	5	PCDHGB3	5	140751709	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	5202557	140751709	40163551	133	167535											
PCDHGA7	56108	broad.mit.edu	37	chr5	140764230	140764230	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagagcccggctacctggtGaccaaggtggtggcggtgga	18	10	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140764230	C	C	140764230	2	2	215	1	0	0	0	0	0	0	0	1	11653	1277	45	4		4	PCDHGA7	5	140764230	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	12521	140764230	40151030	134	167536											
DPYSL3	1809	broad.mit.edu	37	chr5	146780281	146780281	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgtcccagatgacagacaTccgctcctccacaccattgg	7	16	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146780281	G	G	146780281	3	3	215	1	0	0	0	0	1	0	0	0	4788	1435	50	5	648	5	DPYSL3	5	146780281	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	6016051	146780281	34134979	135	167537											
CSF1R	1436	broad.mit.edu	37	chr5	149452813	149452813	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctgatgcttgctgaagCataccccatctggttgtcgg	11	12	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149452813	T	T	149452813	1	4	215	0	1	0	0	0	0	0	0	0	3966	725	25	4		4	CSF1R	5	149452813	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	2672532	149452813	31462447	136	167538											
NMUR2	56923	broad.mit.edu	37	chr5	151771964	151771964	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagtgccactgtttgtGgaaagaagagatcacattct	12	7	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151771964	T	T	151771964	3	4	215	1	0	0	0	0	1	0	0	0	10602	1348	47	2	215	2	NMUR2	5	151771964	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	2319151	151771964	29143296	137	167539											
TIMD4	91937	broad.mit.edu	37	chr5	156381546	156381546	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taagatggtcaaggagacatCacctctcgggatagtcccct	10	11	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156381546	A	A	156381546	3	1	215	1	0	0	0	0	1	0	0	0	16026	826	29	3	888	3	TIMD4	5	156381546	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	4609582	156381546	24533714	138	167540											
ITK	3702	broad.mit.edu	37	chr5	156649936	156649936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgactaccaaaccaatgatCctcaggaactcgcactgcgg	8	13	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156649936	A	A	156649936	3	1	215	1	0	0	0	0	1	0	0	0	7979	855	30	3	581	3	ITK	5	156649936	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	268390	156649936	24265324	139	167541											
ATP10B	23120	broad.mit.edu	37	chr5	160029780	160029780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagggactctctcaaggGcgttgctttggtctaggcct	13	11	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160029780	T	T	160029780	1	4	215	0	1	0	0	0	0	0	0	0	1121	1218	42	3		3	ATP10B	5	160029780	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	3379844	160029780	20885480	140	167542											
GABRA6	2559	broad.mit.edu	37	chr5	161117162	161117162	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attcaactgcattctttttgCagactgtcagcagtaataat	6	8	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161117162	T	T	161117162	1	4	215	0	1	0	0	0	0	0	0	0	6225	725	25	4		4	GABRA6	5	161117162	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1087382	161117162	19798098	141	167543											
RANBP17	64901	broad.mit.edu	37	chr5	170395403	170395403	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggtttctactagagagttTaaaacatgttattggggatg	11	3	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170395403	G	G	170395403	1	3	215	0	1	0	0	0	0	0	0	0	13135	1769	61	5		5	RANBP17	5	170395403	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	9278241	170395403	10519857	142	167544											
RANBP17	64901	broad.mit.edu	37	chr5	170395421	170395421	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaacatgttattggggAtgaagaaagatgtacatata	9	2	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170395421	G	G	170395421	1	3	215	0	1	0	0	0	0	0	0	0	13135	348	12	5		5	RANBP17	5	170395421	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	18	170395421	10519839	143	167545											
ADAMTS2	9509	broad.mit.edu	37	chr5	178634669	178634669	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgttggcgtgctcctctaGgacgcccagggcgcggctga	16	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178634669	T	T	178634669	3	4	215	1	0	0	0	0	1	0	0	0	265	991	35	2	3050	2	ADAMTS2	5	178634669	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	8239248	178634669	2280591	144	167546											
DUSP22	56940	broad.mit.edu	37	chr6	348916	348916	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcagttttccggcactggctCcgctgacctacgataattat	9	12	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	348916	A	A	348916	1	1	215	0	1	0	0	0	0	0	0	0	4861	870	30	3		3	DUSP22	6	348916	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08		348916	170766151	145	167547											
TRIM39	56658	broad.mit.edu	37	chr6	30303750	30303750	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcaggcttcgagatgcttAaggttcgacctttgcccctg	11	11	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30303750	C	C	30303750	3	2	215	1	0	0	0	0	1	0	0	0	16637	363	13	5	788	5	TRIM39	6	30303750	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	29954834	30303750	140811317	146	167548											
TNXB	7148	broad.mit.edu	37	chr6	32029152	32029152	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagggaaaggtggttacccCgagactccaagcactactca	11	11	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32029152	T	T	32029152	1	4	215	0	1	0	0	0	0	0	0	0	16469	667	23	4		4	TNXB	6	32029152	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1725402	32029152	139085915	147	167549											
COL11A2	1302	broad.mit.edu	37	chr6	33156932	33156932	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccagggcgggtccggacaAcagtcagcagagagaaatct	14	10	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33156932	T	T	33156932	3	4	215	1	0	0	0	0	1	0	0	0	3700	43	2	5	5275	5	COL11A2	6	33156932	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	1127780	33156932	137958135	148	167550											
VPS52	6293	broad.mit.edu	37	chr6	33235055	33235056	+	Frame_Shift_Ins	INS	-	A	A													agccgcgggttcctagggtgINSaaaatggtgttcctgctgcg							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33235056	A	A	33235055	7	5	215	1	0	1	1	0	0	0	0	0	17341	1281	45	0	1176	0	VPS52	6	33235055	Frame_Shift_Ins	INS	-	TCGA-75-5146-01A-01D-1625-08	78123	33235055	137880012	149	167551											
PGC	5225	broad.mit.edu	37	chr6	41712181	41712181	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggcacccacaagttggaGgagccggtgtcaaaaaggac	15	9	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41712181	A	A	41712181	2	1	215	1	0	0	0	0	0	0	0	1	11880	987	35	4		4	PGC	6	41712181	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	8477126	41712181	129402886	150	167552											
OPN5	221391	broad.mit.edu	37	chr6	47775959	47775959	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtggtgtctgtgtggtcaGcttttggaaggccagactcc	14	9	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47775959	C	C	47775959	3	2	215	1	0	0	0	0	1	0	0	0	10977	971	34	4	844	4	OPN5	6	47775959	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	6063778	47775959	123339108	151	167553											
CRISP3	10321	broad.mit.edu	37	chr6	49704164	49704164	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcagttcattgtgcttattCacaatctccctttgcacttg	5	12	4	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49704164	A	A	49704164	2	1	215	1	0	0	0	0	0	0	0	1	3913	813	29	3		3	CRISP3	6	49704164	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	1928205	49704164	121410903	152	167554											
TFAP2D	83741	broad.mit.edu	37	chr6	50681731	50681731	+	5'UTR	DEL	G	-	-													ttcccgattctttttttggaGggggaaattgcatcgtaagc							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50681731	-	-	50681731	6	5	215	0	1	1	0	1	0	0	0	0	15913	1015	35	0		0	TFAP2D	6	50681731	5'UTR	DEL	G	TCGA-75-5146-01A-01D-1625-08	977567	50681731	120433336	153	167555											
GSTA5	221357	broad.mit.edu	37	chr6	52699031	52699031	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggttgacatatgagcagaaGaaggatcatttcagtcaaat	10	5	3	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52699031	C	C	52699031	3	2	215	1	0	0	0	0	1	0	0	0	6900	942	33	4	358	4	GSTA5	6	52699031	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	2017300	52699031	118416036	154	167556											
C6orf142	90523	broad.mit.edu	37	chr6	53883845	53883845	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atatggaacttgaaaagcgtGaaaaaagaagcttattaaac	8	4	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53883845	T	T	53883845	4	4	215	1	0	0	0	0	0	1	0	0	2356	1291	45	3	21	3	C6orf142	6	53883845	Nonsense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	1184814	53883845	117231222	155	167557											
HMGCLL1	54511	broad.mit.edu	37	chr6	55360355	55360355	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagttcccactccaattgtGtctcctagagagatctcata	8	11	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55360355	T	T	55360355	3	4	215	1	0	0	0	0	1	0	0	0	7297	1368	48	3	377	3	HMGCLL1	6	55360355	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	1476510	55360355	115754712	156	167558											
DST	667	broad.mit.edu	37	chr6	56485422	56485422	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactcacttatctttcctGtaagtttgctattctcaagc	4	12	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56485422	T	T	56485422	1	4	215	0	1	0	0	0	0	0	0	0	4823	1377	48	3		3	DST	6	56485422	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1125067	56485422	114629645	157	167559											
PTP4A1	7803	broad.mit.edu	37	chr6	64290116	64290116	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctactggaagtggaacttgAgatagggcctaatttgttat	12	5	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64290116	T	T	64290116	1	4	215	0	1	0	0	0	0	0	0	0	12876	319	11	5		5	PTP4A1	6	64290116	3'UTR	SNP	A	TCGA-75-5146-01A-01D-1625-08	7804694	64290116	106824951	158	167560											
EYS	346007	broad.mit.edu	37	chr6	66205320	66205320	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattttcgggtagctgtatTttacagtttatcataaagaa	7	5	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66205320	A	A	66205320	1	1	215	0	1	0	0	0	0	0	0	0	5375	1856	64	5		5	EYS	6	66205320	5'UTR	SNP	T	TCGA-75-5146-01A-01D-1625-08	1915204	66205320	104909747	159	167561											
BAI3	577	broad.mit.edu	37	chr6	69685223	69685223	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatgagtacagacacttGcagcattcagtaggtgcaaa	9	8	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69685223	T	T	69685223	3	4	215	1	0	0	0	0	1	0	0	0	1305	1310	46	3	1755	3	BAI3	6	69685223	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	3479903	69685223	101429844	160	167562											
BAI3	577	broad.mit.edu	37	chr6	70065787	70065787	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgaaatctaatcagtaGggatgttcaatcatttctat	6	5	5	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70065787	T	T	70065787	1	4	215	0	1	0	0	0	0	0	0	0	1305	1015	35	2		2	BAI3	6	70065787	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	380564	70065787	101049280	161	167563											
SFRS18	25957	broad.mit.edu	37	chr6	99856015	99856015	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcagcatcttctgtggccTttttttcttttttggacaat	6	9	4	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99856015	C	C	99856015	3	2	215	1	0	0	0	0	1	0	0	0	14287	1609	56	5	1635	5	SFRS18	6	99856015	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	29790228	99856015	71259052	162	167564											
ASCC3	10973	broad.mit.edu	37	chr6	101075568	101075568	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgggcgtactgatggtcGgaagttaaacaagcccatct	11	9	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101075568	A	A	101075568	4	1	215	1	0	0	0	0	0	1	0	0	1037	1124	39	4	2124	4	ASCC3	6	101075568	Nonsense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	1219553	101075568	70039499	163	167565											
GRIK2	2898	broad.mit.edu	37	chr6	102247541	102247541	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agactgatgctgctctaatgTatgatgctgtgcatgtggtg	13	6	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102247541	A	A	102247541	3	1	215	1	0	0	0	0	1	0	0	0	6840	1638	57	5	996	5	GRIK2	6	102247541	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	1171973	102247541	68867526	164	167566											
OSTM1	28962	broad.mit.edu	37	chr6	108385304	108385304	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagtattatccagcttcAaagatcccaaaattcactaa	3	9	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108385304	T	T	108385304	1	4	215	0	1	0	0	0	0	0	0	0	11392	145	5	5		5	OSTM1	6	108385304	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	6137763	108385304	62729763	165	167567											
AKD1	221264	broad.mit.edu	37	chr6	109954585	109954585	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttgctgaaattaggagCattaaatatttcatttatca	5	4	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109954585	A	A	109954585	1	1	215	0	1	0	0	0	0	0	0	0	460	725	25	3		3	AKD1	6	109954585	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1569281	109954585	61160482	166	167568											
REV3L	5980	broad.mit.edu	37	chr6	111672848	111672848	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttataatttgctctgtagtTgaatgacaaaacattcacaa	5	6	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111672848	A	A	111672848	1	1	215	0	1	0	0	0	0	0	0	0	13348	1827	63	5		5	REV3L	6	111672848	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	1718263	111672848	59442219	167	167569											
THEMIS	387357	broad.mit.edu	37	chr6	128176268	128176268	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttcttaactttgagacCagtaattttaatcacttctc	4	9	4	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128176268	T	T	128176268	3	4	215	1	0	0	0	0	1	0	0	0	15983	594	21	4	1909	4	THEMIS	6	128176268	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	16503420	128176268	42938799	168	167570											
TAAR6	319100	broad.mit.edu	37	chr6	132892437	132892437	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcaataaaagttattgTaactggtcaggttttaaaga	9	3	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132892437	C	C	132892437	3	2	215	1	0	0	0	0	1	0	0	0	15611	1638	57	5	979	5	TAAR6	6	132892437	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	4716169	132892437	38222630	169	167571											
VNN1	8876	broad.mit.edu	37	chr6	133033012	133033012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacttaatccaaaggggggcCtgcaagaggagctgaggagc	15	8	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133033012	A	A	133033012	1	1	215	0	1	0	0	0	0	0	0	0	17309	696	24	2		2	VNN1	6	133033012	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	140575	133033012	38082055	170	167572											
TXLNB	167838	broad.mit.edu	37	chr6	139598141	139598141	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctcagattgaccacttgCtaattattcccaaccttggc	6	12	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139598141	A	A	139598141	1	1	215	0	1	0	0	0	0	0	0	0	16914	812	28	3		3	TXLNB	6	139598141	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	6565129	139598141	31516926	171	167573											
UTRN	7402	broad.mit.edu	37	chr6	144768315	144768315	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaattaccaaatgattttgcAgataaagttcaacttttgtt	6	5	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144768315	T	T	144768315	1	4	215	0	1	0	0	0	0	0	0	0	17230	203	7	5		5	UTRN	6	144768315	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	5170174	144768315	26346752	172	167574											
SASH1	23328	broad.mit.edu	37	chr6	148800606	148800606	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccagcgttcttggggcaaGagaaaatgttaaaaagtagc	11	6	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148800606	T	T	148800606	1	4	215	0	1	0	0	0	0	0	0	0	13960	957	33	3		3	SASH1	6	148800606	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	4032291	148800606	22314461	173	167575											
OPRM1	4988	broad.mit.edu	37	chr6	154414418	154414418	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttagtgcctacctatacCttccctgtcttgctgggctc	7	15	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154414418	A	A	154414418	1	1	215	0	1	0	0	0	0	0	0	0	10981	681	24	2		2	OPRM1	6	154414418	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	5613812	154414418	16700649	174	167576											
PDE10A	10846	broad.mit.edu	37	chr6	165752638	165752638	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtttctatattaatcacCagatctgcctggaataaccc	6	10	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	165752638	A	A	165752638	1	1	215	0	1	0	0	0	0	0	0	0	11724	609	21	2		2	PDE10A	6	165752638	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	11338220	165752638	5362429	175	167577											
THBS2	7058	broad.mit.edu	37	chr6	169648565	169648565	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cacgtacatccggctcttttCcgcctgcaggtgctcgtaga	10	14	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169648565	A	A	169648565	4	1	215	1	0	0	0	0	0	1	0	0	15977	864	30	3	3042	3	THBS2	6	169648565	Nonsense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	3895927	169648565	1466502	176	167578											
HOXA2	3199	broad.mit.edu	37	chr7	27140486	27140486	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagctgcaggcaggaatcTgtggagaaaacgctaaagtc	13	7	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27140486	C	C	27140486	2	2	215	1	0	0	0	0	0	0	0	1	7359	1567	55	5		5	HOXA2	7	27140486	Silent	SNP	T	TCGA-75-5146-01A-01D-1625-08		27140486	131998177	177	167579											
HOXA7	3204	broad.mit.edu	37	chr7	27194740	27194740	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgcgtgggcgatttcaaTgcggcggcgccgcgtcaggt	18	11	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27194740	C	C	27194740	3	2	215	1	0	0	0	0	1	0	0	0	7364	1464	51	5	215	5	HOXA7	7	27194740	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	54254	27194740	131943923	178	167580											
ELMO1	9844	broad.mit.edu	37	chr7	37053009	37053009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgtcgtgggtgaagaaCatcgggtggaagtcgttgca	16	6	1	2	rs149093668	byFrequency	TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37053009	A	A	37053009	3	1	215	1	0	0	0	0	1	0	0	0	5107	478	17	3	879	3	ELMO1	7	37053009	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	9858269	37053009	122085654	179	167581											
ZNF716	441234	broad.mit.edu	37	chr7	57529162	57529162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaagaatgtggcaaagCctttagcttatcctcaaccc	8	10	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57529162	A	A	57529162	3	1	215	1	0	0	0	0	1	0	0	0	18247	739	26	3	1009	3	ZNF716	7	57529162	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	20476153	57529162	101609501	180	167582											
WBSCR17	64409	broad.mit.edu	37	chr7	71036273	71036273	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttctccctccctcaggacCccagccatgataggctgctc	7	18	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71036273	A	A	71036273	2	1	215	1	0	0	0	0	0	0	0	1	17391	610	22	2		2	WBSCR17	7	71036273	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	13507111	71036273	88102390	181	167583											
ABCB1	5243	broad.mit.edu	37	chr7	87168583	87168583	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagccctcgatagacataCctgtctgagcatggatcgga	10	12	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87168583	A	A	87168583	5	1	215	1	0	0	0	0	0	0	1	0	40	521	18	3	1484	3	ABCB1	7	87168583	Splice_Site	SNP	C	TCGA-75-5146-01A-01D-1625-08	16132310	87168583	71970080	182	167584											
PEX1	5189	broad.mit.edu	37	chr7	92146467	92146467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaatgtgtcccccaagtgcCtttaggcactgtgtttcttt	8	10	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92146467	A	A	92146467	1	1	215	0	1	0	0	0	0	0	0	0	11830	696	24	2		2	PEX1	7	92146467	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	4977884	92146467	66992196	183	167585											
LRGUK	136332	broad.mit.edu	37	chr7	133824234	133824234	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctctgtggatatgttcatCtacagaagttggatctttca	8	7	5	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133824234	T	T	133824234	2	4	215	1	0	0	0	0	0	0	0	1	9030	912	32	4		4	LRGUK	7	133824234	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	41677767	133824234	25314429	184	167586											
WDR91	29062	broad.mit.edu	37	chr7	134896335	134896335	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggggcggggccggacgcGggcgccgagcacgtcacgcc	19	14	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134896335	A	A	134896335	1	1	215	0	1	0	0	0	0	0	0	0	17465	1131	39	4		4	WDR91	7	134896335	5'Flank	SNP	G	TCGA-75-5146-01A-01D-1625-08	1072101	134896335	24242328	185	167587											
BRAF	673	broad.mit.edu	37	chr7	140481402	140481402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actttcccttgtagactgttCcaaatgatccagatccaatt	5	11	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140481402	A	A	140481402	3	1	215	1	0	0	0	0	1	0	0	0	1505	855	30	3	926	3	BRAF	7	140481402	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	5585067	140481402	18657261	186	167588											
MLL3	58508	broad.mit.edu	37	chr7	151945057	151945057	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttacccatgccaatttttGgagtgactgagatgtaagtt	10	6	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151945057	A	A	151945057	3	1	215	1	0	0	0	0	1	0	0	0	9715	1348	47	4	12457	4	MLL3	7	151945057	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	11463655	151945057	7193606	187	167589											
ERICH1	157697	broad.mit.edu	37	chr8	623844	623844	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcttccttttaatttGctgtttctttttcagtttcc	4	9	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	623844	C	C	623844	3	2	215	1	0	0	0	0	1	0	0	0	5272	1328	46	4	835	4	ERICH1	8	623844	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08		623844	145740178	188	167590											
CSMD1	64478	broad.mit.edu	37	chr8	3165387	3165388	+	Intron	DNP	CA	AG	AG													gaacgttcagcttcaggcatCacatgtttctatttagctac							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	3165388	AG	AG	3165387	1	1	215	0	1	0	0	0	0	0	0	0	3978	841	29	3		3	CSMD1	8	3165387	Intron	DNP	CA	TCGA-75-5146-01A-01D-1625-08	2541543	3165387	143198635	189	167591											
NPM2	10361	broad.mit.edu	37	chr8	21891585	21891585	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgattctgtagctctgaaGctgtgcccctgcatcctttc	8	12	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21891585	C	C	21891585	1	2	215	0	1	0	0	0	0	0	0	0	10683	986	34	4		4	NPM2	8	21891585	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	18726198	21891585	124472437	190	167592											
SCARA5	286133	broad.mit.edu	37	chr8	27824157	27824157	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctccctgatgcatgcagaTgttcatgttgaacttctcac	7	12	3	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27824157	A	A	27824157	1	1	215	0	1	0	0	0	0	0	0	0	13992	1479	51	5		5	SCARA5	8	27824157	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	5932572	27824157	118539865	191	167593											
PURG	29942	broad.mit.edu	37	chr8	30889896	30889896	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggccatgctcttgccGgtggcctttcaggcccaggt	14	13	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30889896	T	T	30889896	2	4	215	1	0	0	0	0	0	0	0	1	12937	1115	39	1		1	PURG	8	30889896	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	3065739	30889896	115474126	192	167594											
WRN	7486	broad.mit.edu	37	chr8	30958475	30958475	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agacagcactgccaatggtaAgctttgccaagtctgatgtc	10	10	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30958475	T	T	30958475	1	4	215	0	1	0	0	0	0	0	0	0	17529	87	3	5		5	WRN	8	30958475	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	68579	30958475	115405547	193	167595											
ADAM2	2515	broad.mit.edu	37	chr8	39618684	39618684	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagttctaagacagatttcTgaaaacatactcagcttcac	6	9	4	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39618684	A	A	39618684	1	1	215	0	1	0	0	0	0	0	0	0	241	1595	55	5		5	ADAM2	8	39618684	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	8660209	39618684	106745338	194	167596											
CHRNB3	1142	broad.mit.edu	37	chr8	42591742	42591742	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccctgctttgaagatgtGgctacatagttaccattagg	9	9	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42591742	T	T	42591742	3	4	215	1	0	0	0	0	1	0	0	0	3423	1357	47	2	1380	2	CHRNB3	8	42591742	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	2973058	42591742	103772280	195	167597											
FNTA	2339	broad.mit.edu	37	chr8	42914258	42914258	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagcagaatgggctgataTagatccggtgccgcagaatg	14	8	0	5			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42914258	C	C	42914258	3	2	215	1	0	0	0	0	1	0	0	0	6035	1406	49	5	230	5	FNTA	8	42914258	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	322516	42914258	103449764	196	167598											
POTEA	340441	broad.mit.edu	37	chr8	43156945	43156945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttccttttaaccttgatgGtactttataaagatgaaccc	5	10	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43156945	T	T	43156945	1	4	215	0	1	0	0	0	0	0	0	0	12356	1276	44	3		3	POTEA	8	43156945	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	242687	43156945	103207077	197	167599											
SNTG1	54212	broad.mit.edu	37	chr8	51442834	51442834	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatacagtaagatgacccagGcatagctcagattaataagg	9	7	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51442834	T	T	51442834	1	4	215	0	1	0	0	0	0	0	0	0	14988	1218	42	3		3	SNTG1	8	51442834	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	8285889	51442834	94921188	198	167600											
SNTG1	54212	broad.mit.edu	37	chr8	51617134	51617134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaagtgatgtgtgccagCctgtgtaactccaggttttc	12	8	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51617134	A	A	51617134	1	1	215	0	1	0	0	0	0	0	0	0	14988	754	26	3		3	SNTG1	8	51617134	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	174300	51617134	94746888	199	167601											
SNTG1	54212	broad.mit.edu	37	chr8	51621671	51621671	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcttcgtttttgttaatGgaagataaattatgcttcga	8	4	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51621671	T	T	51621671	1	4	215	0	1	0	0	0	0	0	0	0	14988	1363	47	2		2	SNTG1	8	51621671	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	4537	51621671	94742351	200	167602											
PXDNL	137902	broad.mit.edu	37	chr8	52252232	52252232	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttccgctgcaaacgtGctgaaatcttgggagaactt	10	8	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52252232	T	T	52252232	3	4	215	1	0	0	0	0	1	0	0	0	12956	1310	46	3	305	3	PXDNL	8	52252232	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	630561	52252232	94111790	201	167603											
ST18	9705	broad.mit.edu	37	chr8	53045937	53045937	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacactcaagttatttagGttcttcagtaatcacattaa	5	8	5	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53045937	T	T	53045937	1	4	215	0	1	0	0	0	0	0	0	0	15330	1276	44	3		3	ST18	8	53045937	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	793705	53045937	93318085	202	167604											
RP1	6101	broad.mit.edu	37	chr8	55542556	55542556	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtatgaatttcttgcaCacatcattgttagttgtggg	9	5	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55542556	A	A	55542556	3	1	215	1	0	0	0	0	1	0	0	0	13643	477	17	3	6124	3	RP1	8	55542556	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	2496619	55542556	90821466	203	167605											
KCNB2	9312	broad.mit.edu	37	chr8	73848519	73848519	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgaatcatgcgcatcctcaGgatcctgaaactcgccaggc	9	15	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73848519	C	C	73848519	3	2	215	1	0	0	0	0	1	0	0	0	8083	1000	35	4	935	4	KCNB2	8	73848519	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	18305963	73848519	72515503	204	167606											
OSR2	116039	broad.mit.edu	37	chr8	99961644	99961644	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcagtaaattgactcCggacagaaagccctctcgag	11	12	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99961644	A	A	99961644	3	1	215	1	0	0	0	0	1	0	0	0	11388	652	23	1	466	1	OSR2	8	99961644	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	26113125	99961644	46402378	205	167607											
CSMD3	114788	broad.mit.edu	37	chr8	113403035	113403035	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgaaaataaagcagtcCaagagagggagttaattcta	10	6	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113403035	A	A	113403035	1	1	215	0	1	0	0	0	0	0	0	0	3980	609	21	2		2	CSMD3	8	113403035	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	13441391	113403035	32960987	206	167608											
PTK2	5747	broad.mit.edu	37	chr8	141684259	141684260	+	Intron	DNP	GG	AA	AA													aaccagaccaattgactcctGggtctcactgcagttccact							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	141684260	AA	AA	141684259	1	1	215	0	1	0	0	0	0	0	0	0	12868	1363	47	4		4	PTK2	8	141684259	Intron	DNP	GG	TCGA-75-5146-01A-01D-1625-08	28281224	141684259	4679763	207	167609											
JAK2	3717	broad.mit.edu	37	chr9	5050756	5050756	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacacaggaagaatgtcttgGgatggcagtgttagatatga	13	4	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5050756	C	C	5050756	3	2	215	1	0	0	0	0	1	0	0	0	8008	1232	43	4	553	4	JAK2	9	5050756	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08		5050756	136162675	208	167610											
APTX	54840	broad.mit.edu	37	chr9	32986120	32986120	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatttggcaacagttaataCtgtgtgatagcacaactaaa	7	6	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32986120	A	A	32986120	1	1	215	0	1	0	0	0	0	0	0	0	822	580	20	3		3	APTX	9	32986120	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	27935364	32986120	108227311	209	167611											
GAPVD1	26130	broad.mit.edu	37	chr9	128094322	128094322	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccgccccagcacaccagGcctcagtgttgtgtccggta	10	16	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128094322	T	T	128094322	3	4	215	1	0	0	0	0	1	0	0	0	6301	1203	42	3	2333	3	GAPVD1	9	128094322	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	95108202	128094322	13119109	210	167612											
LCN12	286256	broad.mit.edu	37	chr9	139849763	139849763	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgccctcccttgcttcctCctgggctctgtcccctgctc	8	19	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139849763	T	T	139849763	1	4	215	0	1	0	0	0	0	0	0	0	8754	870	30	4		4	LCN12	9	139849763	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	11755441	139849763	1363668	211	167613											
DIP2C	22982	broad.mit.edu	37	chr10	468680	468680	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctttccaccgagggattcCgctgcaacgatgcaaacaga	9	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	468680	A	A	468680	1	1	215	0	1	0	0	0	0	0	0	0	4569	667	23	1		1	DIP2C	10	468680	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08		468680	135066067	212	167614											
ITIH2	3698	broad.mit.edu	37	chr10	7755254	7755254	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggcttggtgaggtaagGcctgagtgagcaaggcttgc	18	7	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7755254	T	T	7755254	1	4	215	0	1	0	0	0	0	0	0	0	7974	1218	42	3		3	ITIH2	10	7755254	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	7286574	7755254	127779493	213	167615											
SEC61A2	55176	broad.mit.edu	37	chr10	12191875	12191875	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtatgatcattaccattgGgcaagccattgtgtatgtca	10	7	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12191875	T	T	12191875	3	4	215	1	0	0	0	0	1	0	0	0	14114	1232	43	2	399	2	SEC61A2	10	12191875	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	4436621	12191875	123342872	214	167616											
UCMA	221044	broad.mit.edu	37	chr10	13271742	13271742	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagaagcaagagttgcccctCaagaatgaggacacttaggg	12	8	1	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13271742	G	G	13271742	1	3	215	0	1	0	0	0	0	0	0	0	17052	841	29	4		4	UCMA	10	13271742	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1079867	13271742	122263005	215	167617											
RSU1	6251	broad.mit.edu	37	chr10	16824145	16824145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcactgtatccggattctaCctgtactcctacaaagcaaa	5	12	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16824145	A	A	16824145	1	1	215	0	1	0	0	0	0	0	0	0	13827	522	18	3		3	RSU1	10	16824145	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	3552403	16824145	118710602	216	167618											
CUBN	8029	broad.mit.edu	37	chr10	16873346	16873346	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcattattttgagagaagAcagggtttggcagcagagtt	13	4	1	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16873346	T	T	16873346	3	4	215	1	0	0	0	0	1	0	0	0	4084	275	10	5	450	5	CUBN	10	16873346	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	49201	16873346	118661401	217	167619											
COMMD3	23412	broad.mit.edu	37	chr10	22607738	22607738	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgtgttattttagaccAatcaacttcataggatgtac	7	6	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22607738	G	G	22607738	3	3	215	1	0	0	0	0	1	0	0	0	3749	130	5	5	437	5	COMMD3	10	22607738	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	5734392	22607738	112927009	218	167620											
SVIL	6840	broad.mit.edu	37	chr10	29779648	29779648	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgtgcaaacttactccTttttacttcatgagggtctt	7	8	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29779648	C	C	29779648	1	2	215	0	1	0	0	0	0	0	0	0	15539	1624	56	5		5	SVIL	10	29779648	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	7171910	29779648	105755099	219	167621											
ARHGAP12	94134	broad.mit.edu	37	chr10	32099697	32099697	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagatttatttttaaAaagtcaatcaccttgctgaa	5	5	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32099697	G	G	32099697	1	3	215	0	1	0	0	0	0	0	0	0	867	29	1	5		5	ARHGAP12	10	32099697	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	2320049	32099697	103435050	220	167622											
ZNF248	57209	broad.mit.edu	37	chr10	38109438	38109438	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattggataaggaatgttgCggtgaggatcgtgcaactgg	17	4	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38109438	T	T	38109438	1	4	215	0	1	0	0	0	0	0	0	0	17919	783	27	4		4	ZNF248	10	38109438	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	6009741	38109438	97425309	221	167623											
RET	5979	broad.mit.edu	37	chr10	43604704	43604704	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatacctattgcctgtctGgggaagattgaaaggccaag	11	10	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43604704	A	A	43604704	1	1	215	0	1	0	0	0	0	0	0	0	13343	1363	47	4		4	RET	10	43604704	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	5495266	43604704	91930043	222	167624											
FRMPD2	143162	broad.mit.edu	37	chr10	49430483	49430483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtaaaactggtgccttGtcaggctgtgcctggaaaag	14	8	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49430483	T	T	49430483	3	4	215	1	0	0	0	0	1	0	0	0	6118	1377	48	3	2673	3	FRMPD2	10	49430483	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	5825779	49430483	86104264	223	167625											
PCDH15	65217	broad.mit.edu	37	chr10	55569381	55569381	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accttgtcccacgaaagctaCgcaggaatgaatctgtgggt	11	10	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55569381	T	T	55569381	1	4	215	0	1	0	0	0	0	0	0	0	11605	551	19	4		4	PCDH15	10	55569381	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	6138898	55569381	79965366	224	167626											
BICC1	80114	broad.mit.edu	37	chr10	60272985	60272985	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgcagcaccgactccccaGtgcccggctccgaggacgac	12	18	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60272985	T	T	60272985	3	4	215	1	0	0	0	0	1	0	0	0	1433	1029	36	3	84	3	BICC1	10	60272985	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	4703604	60272985	75261762	225	167627											
C10orf11	83938	broad.mit.edu	37	chr10	78317043	78317043	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatccgagatgaccagctCtgaagccaacttctgtatac	7	11	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78317043	T	T	78317043	2	4	215	1	0	0	0	0	0	0	0	1	1593	900	32	4		4	C10orf11	10	78317043	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	18044058	78317043	57217704	226	167628											
KCNMA1	3778	broad.mit.edu	37	chr10	78647236	78647236	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatcaggtccgtcggcaCgagctcaaactcatagggcg	13	11	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78647236	A	A	78647236	3	1	215	1	0	0	0	0	1	0	0	0	8143	536	19	3	244	3	KCNMA1	10	78647236	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	330193	78647236	56887511	227	167629											
RGR	5995	broad.mit.edu	37	chr10	86007205	86007205	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtgattatgactgttaTagcatgaagcatgctaccct	9	8	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86007205	G	G	86007205	1	3	215	0	1	0	0	0	0	0	0	0	13400	1421	49	5		5	RGR	10	86007205	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	7359969	86007205	49527542	228	167630											
BTAF1	9044	broad.mit.edu	37	chr10	93744142	93744142	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacaacaatgttttaacaaTagatcaagctagtgacttgg	7	6	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93744142	C	C	93744142	3	2	215	1	0	0	0	0	1	0	0	0	1545	1406	49	5	2482	5	BTAF1	10	93744142	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	7736937	93744142	41790605	229	167631											
TCTN3	26123	broad.mit.edu	37	chr10	97440280	97440280	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctgatacatgagcttgCgggttggacaggagacctac	12	10	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97440280	T	T	97440280	2	4	215	1	0	0	0	0	0	0	0	1	15846	755	27	4		4	TCTN3	10	97440280	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	3696138	97440280	38094467	230	167632											
PIK3AP1	118788	broad.mit.edu	37	chr10	98405277	98405277	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcagccatggactcatagAgatcctcgtcacagccgggg	13	12	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98405277	T	T	98405277	3	4	215	1	0	0	0	0	1	0	0	0	12003	304	11	5	1129	5	PIK3AP1	10	98405277	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	964997	98405277	37129470	231	167633											
SCD	6319	broad.mit.edu	37	chr10	102112089	102112089	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccagatggaactcacactGattggtgactcccccactgt	8	14	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102112089	T	T	102112089	1	4	215	0	1	0	0	0	0	0	0	0	13998	1305	45	3		3	SCD	10	102112089	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	3706812	102112089	33422658	232	167634											
VWA2	340706	broad.mit.edu	37	chr10	116014569	116014569	+	Intron	DEL	G	-	-													tctcccctttcatgctaagaGggacagcagcctggcccacc							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	116014569	-	-	116014569	6	5	215	0	1	1	0	1	0	0	0	0	17366	1015	35	0		0	VWA2	10	116014569	Intron	DEL	G	TCGA-75-5146-01A-01D-1625-08	13902480	116014569	19520178	233	167635											
ATRNL1	26033	broad.mit.edu	37	chr10	117045738	117045738	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttactagctcatctttgtgGagaaggatggagtcatattg	11	6	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117045738	A	A	117045738	3	1	215	1	0	0	0	0	1	0	0	0	1211	1174	41	4	2304	4	ATRNL1	10	117045738	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	1031169	117045738	18489009	234	167636											
VAX1	11023	broad.mit.edu	37	chr10	118897464	118897464	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgggaggttcccctccGcgcccttgctctcccgactc	11	19	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118897464	T	T	118897464	3	4	215	1	0	0	0	0	1	0	0	0	17261	1087	38	3	1052	3	VAX1	10	118897464	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	1851726	118897464	16637283	235	167637											
PDZD8	118987	broad.mit.edu	37	chr10	119043833	119043833	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctacgttagtaactacaTggtggtctgattctccttct	7	9	4	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119043833	A	A	119043833	3	1	215	1	0	0	0	0	1	0	0	0	11799	1464	51	5	1057	5	PDZD8	10	119043833	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	146369	119043833	16490914	236	167638											
STK32C	282974	broad.mit.edu	37	chr10	134038769	134038769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctcataggccatcacccCcaccgaccaccagtccacct	5	21	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134038769	A	A	134038769	3	1	215	1	0	0	0	0	1	0	0	0	15417	623	22	2	640	2	STK32C	10	134038769	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	14994936	134038769	1495978	237	167639											
MUC2	4583	broad.mit.edu	37	chr11	1098690	1098690	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcagcactactacgatGcctgcgtgttcgacagctgc	10	16	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1098690	C	C	1098690	3	2	215	1	0	0	0	0	1	0	0	0	10069	1319	46	4	7198	4	MUC2	11	1098690	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08		1098690	133907826	238	167640											
MUC5B	727897	broad.mit.edu	37	chr11	1264035	1264035	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagcacagccaccacaccCacagctaccagcgttacacc	6	18	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1264035	A	A	1264035	2	1	215	1	0	0	0	0	0	0	0	1	10073	581	21	2		2	MUC5B	11	1264035	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	165345	1264035	133742481	239	167641											
TH	7054	broad.mit.edu	37	chr11	2192886	2192887	+	Intron	DNP	CC	AA	AA													gctggcaccagccctgggctCcggtccactgcggccgccgg							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	2192887	AA	AA	2192886	1	1	215	0	1	0	0	0	0	0	0	0	15961	870	30	3		3	TH	11	2192886	Intron	DNP	CC	TCGA-75-5146-01A-01D-1625-08	928851	2192886	132813630	240	167642											
KCNQ1	3784	broad.mit.edu	37	chr11	2591907	2591907	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtacgtggtccgcctctGgtccgccggctgccgcagca	15	15	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2591907	C	C	2591907	3	2	215	1	0	0	0	0	1	0	0	0	8152	1357	47	4	546	4	KCNQ1	11	2591907	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	399021	2591907	132414609	241	167643											
STIM1	6786	broad.mit.edu	37	chr11	4104601	4104601	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaccctggcatccactcActggtggctgccctcaacat	7	16	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4104601	T	T	4104601	2	4	215	1	0	0	0	0	0	0	0	1	15401	146	6	5		5	STIM1	11	4104601	Silent	SNP	A	TCGA-75-5146-01A-01D-1625-08	1512694	4104601	130901915	242	167644											
OR52E4	390081	broad.mit.edu	37	chr11	5906021	5906021	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catttgtgtttctcattctgCgtctgccattctgtgggcat	9	10	4	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5906021	G	G	5906021	3	3	215	1	0	0	0	0	1	0	0	0	11210	768	27	4	501	4	OR52E4	11	5906021	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	1801420	5906021	129100495	243	167645											
OR2AG1	144125	broad.mit.edu	37	chr11	6806406	6806406	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcagcaatggcctactgctCctggctatcaccatggaagc	9	13	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6806406	A	A	6806406	2	1	215	1	0	0	0	0	0	0	0	1	11078	842	30	3		3	OR2AG1	11	6806406	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	900385	6806406	128200110	244	167646											
PTPN5	84867	broad.mit.edu	37	chr11	18750450	18750450	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgagactcaggctgggcaGtgcccagagaaccttgtagg	15	11	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18750450	T	T	18750450	1	4	215	0	1	0	0	0	0	0	0	0	12899	1044	36	3		3	PTPN5	11	18750450	3'UTR	SNP	G	TCGA-75-5146-01A-01D-1625-08	11944044	18750450	116256066	245	167647											
ZDHHC13	54503	broad.mit.edu	37	chr11	19177405	19177405	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attggatacatattggacttCaattcagattcttggctttt	7	6	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19177405	T	T	19177405	2	4	215	1	0	0	0	0	0	0	0	1	17729	825	29	4		4	ZDHHC13	11	19177405	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	426955	19177405	115829111	246	167648											
ANO3	63982	broad.mit.edu	37	chr11	26552645	26552645	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtgtgtaggtttgtgtAtctcttttcaaagaagtttc	11	4	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26552645	T	T	26552645	1	4	215	0	1	0	0	0	0	0	0	0	698	464	16	5		5	ANO3	11	26552645	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	7375240	26552645	108453871	247	167649											
CAT	847	broad.mit.edu	37	chr11	34478364	34478364	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgacaaaatgcttcaGgtgagcctggtggattgaga	13	7	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34478364	T	T	34478364	3	4	215	1	0	0	0	0	1	0	0	0	2712	1014	35	2	1086	2	CAT	11	34478364	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	7925719	34478364	100528152	248	167650											
FOLH1	2346	broad.mit.edu	37	chr11	49192921	49192921	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attggaaaaaaaaaaaaaaaAgtcattgatggtttgggaag	10	1	1	1	rs34828796		TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49192921	T	T	49192921	1	4	215	0	1	0	0	0	0	0	0	0	6037	87	3	5		5	FOLH1	11	49192921	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	14714557	49192921	85813595	249	167651											
SPRYD5	84767	broad.mit.edu	37	chr11	55656592	55656592	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atactgccttgtgctggttgTactttctccatcccccaccc	6	16	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55656592	C	C	55656592	1	2	215	0	1	0	0	0	0	0	0	0	15229	1653	57	5		5	SPRYD5	11	55656592	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	6463671	55656592	79349924	250	167652											
OR5T2	219464	broad.mit.edu	37	chr11	56000696	56000696	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataattctctagtagtgaatCagaagacagtgacaaactgg	9	6	2	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56000696	A	A	56000696	1	1	215	0	1	0	0	0	0	0	0	0	11276	841	29	3		3	OR5T2	11	56000696	5'Flank	SNP	C	TCGA-75-5146-01A-01D-1625-08	344104	56000696	79005820	251	167653											
OR5AR1	219493	broad.mit.edu	37	chr11	56431279	56431279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtttacctggttaatgtaGtggggaatattggtatgatt	12	2	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56431279	T	T	56431279	3	4	215	1	0	0	0	0	1	0	0	0	11239	1029	36	3	120	3	OR5AR1	11	56431279	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	430583	56431279	78575237	252	167654											
SSRP1	6749	broad.mit.edu	37	chr11	57095078	57095078	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaatcgatacagaaagtcCcaccaatggctcatactgct	6	12	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57095078	A	A	57095078	1	1	215	0	1	0	0	0	0	0	0	0	15312	638	22	2		2	SSRP1	11	57095078	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	663799	57095078	77911438	253	167655											
TRPT1	83707	broad.mit.edu	37	chr11	63992969	63992969	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctccaaggcccctacttAccagctcccatgggaagccc	8	18	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63992969	C	C	63992969	5	2	215	1	0	0	0	0	0	0	1	0	16719	405	14	5	635	5	TRPT1	11	63992969	Splice_Site	SNP	A	TCGA-75-5146-01A-01D-1625-08	6897891	63992969	71013547	254	167656											
CATSPER1	117144	broad.mit.edu	37	chr11	65789363	65789363	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaccactctgcaggaacacAggggtgcactcagagctgtc	12	12	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65789363	G	G	65789363	1	3	215	0	1	0	0	0	0	0	0	0	2713	203	7	5		5	CATSPER1	11	65789363	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	1796394	65789363	69217153	255	167657											
CCDC87	55231	broad.mit.edu	37	chr11	66358319	66358319	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaatgggcttcagggccCgctcccaggcattcaccaat	11	14	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66358319	T	T	66358319	3	4	215	1	0	0	0	0	1	0	0	0	2890	652	23	4	385	4	CCDC87	11	66358319	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	568956	66358319	68648197	256	167658											
ALDH3B2	222	broad.mit.edu	37	chr11	67450448	67450448	+	5'Flank	DEL	G	-	-													acaggtcgacttctgaaggtGgtaggcctcagagccacagc							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67450448	-	-	67450448	6	5	215	0	1	1	0	1	0	0	0	0	500	1363	47	0		0	ALDH3B2	11	67450448	5'Flank	DEL	G	TCGA-75-5146-01A-01D-1625-08	1092129	67450448	67556068	257	167659											
FGF19	9965	broad.mit.edu	37	chr11	69514154	69514154	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggcccctgaggtcctcaGgctcctctgggaccatgggc	14	14	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69514154	T	T	69514154	3	4	215	1	0	0	0	0	1	0	0	0	5904	1000	35	2	127	2	FGF19	11	69514154	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	2063706	69514154	65492362	258	167660											
P2RY6	5031	broad.mit.edu	37	chr11	73008274	73008274	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagcggcgtggcaaggcGgcccgcatggccgtggtggt	20	11	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73008274	T	T	73008274	2	4	215	1	0	0	0	0	0	0	0	1	11448	1103	39	1		1	P2RY6	11	73008274	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	3494120	73008274	61998242	259	167661											
ARHGEF17	9828	broad.mit.edu	37	chr11	73020531	73020531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgacgacgaccgagacgGtgagggcggccaccgctggg	18	12	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73020531	T	T	73020531	3	4	215	1	0	0	0	0	1	0	0	0	902	1261	44	3	850	3	ARHGEF17	11	73020531	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	12257	73020531	61985985	260	167662											
WNT11	7481	broad.mit.edu	37	chr11	75907792	75907792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaaaggccatgaccgatGgaaggagagacagggttgtc	16	6	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75907792	T	T	75907792	1	4	215	0	1	0	0	0	0	0	0	0	17511	1363	47	2		2	WNT11	11	75907792	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	2887261	75907792	59098724	261	167663											
PAK1	5058	broad.mit.edu	37	chr11	77066698	77066698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgaagaaaggttcagaaagCtacaaattccttacgtaatt	7	7	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77066698	T	T	77066698	1	4	215	0	1	0	0	0	0	0	0	0	11493	812	28	4		4	PAK1	11	77066698	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1158906	77066698	57939818	262	167664											
PCF11	51585	broad.mit.edu	37	chr11	82876987	82876987	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaaaaaagtaaatcaggtGaaaaaataaccaagaaagaa	7	3	1	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82876987	T	T	82876987	4	4	215	1	0	0	0	0	0	1	0	0	11667	1291	45	3	1066	3	PCF11	11	82876987	Nonsense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	5810289	82876987	52129529	263	167665											
FAT3	120114	broad.mit.edu	37	chr11	92590441	92590441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtccaggggacatgcaGtgtgtcagttatgaagccag	14	9	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92590441	T	T	92590441	3	4	215	1	0	0	0	0	1	0	0	0	5748	1020	36	3	11501	3	FAT3	11	92590441	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	9713454	92590441	42416075	264	167666											
MTNR1B	4544	broad.mit.edu	37	chr11	92714983	92714983	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatccagaccgccagcacCcagtacacggcggcagtggt	11	15	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92714983	A	A	92714983	2	1	215	1	0	0	0	0	0	0	0	1	10046	610	22	2		2	MTNR1B	11	92714983	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	124542	92714983	42291533	265	167667											
SLC36A4	120103	broad.mit.edu	37	chr11	92881599	92881599	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatatcgtgccaaagaaaaCagagtttgttaccattttta	6	6	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92881599	A	A	92881599	1	1	215	0	1	0	0	0	0	0	0	0	14710	493	17	3		3	SLC36A4	11	92881599	3'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	166616	92881599	42124917	266	167668											
C11orf53	341032	broad.mit.edu	37	chr11	111152148	111152148	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcagttcctctcagtctcCatttgtgcagatgccaggtg	10	12	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111152148	T	T	111152148	1	4	215	0	1	0	0	0	0	0	0	0	1660	609	21	4		4	C11orf53	11	111152148	5'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	18270549	111152148	23854368	267	167669											
BUD13	84811	broad.mit.edu	37	chr11	116619165	116619165	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgcctatgcccactacCacagcccagccacccccaca	5	22	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116619165	A	A	116619165	1	1	215	0	1	0	0	0	0	0	0	0	1583	609	21	2		2	BUD13	11	116619165	3'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	5467017	116619165	18387351	268	167670											
IL10RA	3587	broad.mit.edu	37	chr11	117869691	117869691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagccccctgtgctggggGacagctgcagtagtggcagc	18	11	0	0	rs78753252	byFrequency	TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117869691	T	T	117869691	3	4	215	1	0	0	0	0	1	0	0	0	7690	1174	41	3	1098	3	IL10RA	11	117869691	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	1250526	117869691	17136825	269	167671											
TRIM29	23650	broad.mit.edu	37	chr11	120008387	120008387	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttcggcaaaggtaacgGgtggcttcttggcagccccc	12	13	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120008387	T	T	120008387	3	4	215	1	0	0	0	0	1	0	0	0	16627	1232	43	2	1449	2	TRIM29	11	120008387	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	2138696	120008387	14998129	270	167672											
ZNF202	7753	broad.mit.edu	37	chr11	123600515	123600515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgacaggacttcctggcCgtgaacatggacagtcacct	10	13	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123600515	A	A	123600515	3	1	215	1	0	0	0	0	1	0	0	0	17889	652	23	1	1545	1	ZNF202	11	123600515	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	3592128	123600515	11406001	271	167673											
PANX3	116337	broad.mit.edu	37	chr11	124487352	124487352	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatccggcagaagagttcCgacccctatgtgttctggaa	11	10	1	3	rs147550190		TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124487352	T	T	124487352	2	4	215	1	0	0	0	0	0	0	0	1	11516	639	23	4		4	PANX3	11	124487352	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	886837	124487352	10519164	272	167674											
PATE2	399967	broad.mit.edu	37	chr11	125648692	125648692	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcttctgtcaggtgcagCttcctgtggaaggagcaagt	15	8	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125648692	A	A	125648692	1	1	215	0	1	0	0	0	0	0	0	0	11568	812	28	3		3	PATE2	11	125648692	5'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	1161340	125648692	9357824	273	167675											
AKAP3	10566	broad.mit.edu	37	chr12	4736589	4736589	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atatcttcagggtactcaaaGgaaatgtctgatgcaggctt	10	7	4	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4736589	C	C	4736589	2	2	215	1	0	0	0	0	0	0	0	1	452	987	35	4		4	AKAP3	12	4736589	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08		4736589	129115306	274	167676											
ACRBP	84519	broad.mit.edu	37	chr12	6749396	6749396	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattctggggaccctacctGtggcacaggagataggggag	16	8	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6749396	A	A	6749396	1	1	215	0	1	0	0	0	0	0	0	0	170	1392	48	4		4	ACRBP	12	6749396	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	2012807	6749396	127102499	275	167677											
LRRC23	10233	broad.mit.edu	37	chr12	7014864	7014864	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	attctgagaaagaagaggacGagaaggagacagaggagggg	18	3	1	6			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7014864	T	T	7014864	4	4	215	1	0	0	0	0	0	1	0	0	9065	1059	37	3	69	3	LRRC23	12	7014864	Nonsense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	265468	7014864	126837031	276	167678											
CLEC4E	26253	broad.mit.edu	37	chr12	8691694	8691694	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accaaatttctaggattttaCattttgcttttgaaaaataa	4	5	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8691694	G	G	8691694	1	3	215	0	1	0	0	0	0	0	0	0	3547	493	17	4		4	CLEC4E	12	8691694	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1676830	8691694	125160201	277	167679											
GRIN2B	2904	broad.mit.edu	37	chr12	13768217	13768217	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accacctaaaagaaaggcgcGatgctccaattaaaacattc	6	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13768217	A	A	13768217	1	1	215	0	1	0	0	0	0	0	0	0	6846	1073	37	4		4	GRIN2B	12	13768217	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	5076523	13768217	120083678	278	167680											
PDE3A	5139	broad.mit.edu	37	chr12	20705159	20705159	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactggcggtcggggaagccGgtcagggtggtgcgcaatgt	20	8	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20705159	T	T	20705159	1	4	215	0	1	0	0	0	0	0	0	0	11731	1131	39	1		1	PDE3A	12	20705159	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	6936942	20705159	113146736	279	167681											
SLCO1C1	53919	broad.mit.edu	37	chr12	20867940	20867940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagaacttgaccaaactcCcatcaaattaagactattgc	4	10	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20867940	A	A	20867940	1	1	215	0	1	0	0	0	0	0	0	0	14839	638	22	2		2	SLCO1C1	12	20867940	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	162781	20867940	112983955	280	167682											
IFLTD1	160492	broad.mit.edu	37	chr12	25702345	25702345	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatatagttactctactaatCtgaggactagacagatagta	8	6	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25702345	A	A	25702345	3	1	215	1	0	0	0	0	1	0	0	0	7600	912	32	3	1032	3	IFLTD1	12	25702345	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	4834405	25702345	108149550	281	167683											
OVCH1	341350	broad.mit.edu	37	chr12	29642629	29642629	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggagggaggttcatgctcTtgagcacagtattacacgct	14	8	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29642629	A	A	29642629	3	1	215	1	0	0	0	0	1	0	0	0	11417	1609	56	5	2870	5	OVCH1	12	29642629	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	3940284	29642629	104209266	282	167684											
RPAP3	79657	broad.mit.edu	37	chr12	48075453	48075453	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gggcactcatcaggatgactGagtgccagctgttataaagt	12	8	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48075453	C	C	48075453	1	2	215	0	1	0	0	0	0	0	0	0	13654	1305	45	4		4	RPAP3	12	48075453	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	18432824	48075453	85776442	283	167685											
KRT6B	3854	broad.mit.edu	37	chr12	52841671	52841671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagccgggccaggtcctGcttggccttctgcagggcat	14	14	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52841671	T	T	52841671	3	4	215	1	0	0	0	0	1	0	0	0	8552	1328	46	3	391	3	KRT6B	12	52841671	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	4766218	52841671	81010224	284	167686											
KRT4	3851	broad.mit.edu	37	chr12	53201583	53201583	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctacgcgcttgctgtgGgcatctttaagggcattctc	11	11	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53201583	T	T	53201583	2	4	215	1	0	0	0	0	0	0	0	1	8548	1219	43	2		2	KRT4	12	53201583	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	359912	53201583	80650312	285	167687											
DGKA	1606	broad.mit.edu	37	chr12	56346633	56346633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgataccaggagaccccatgGggatatctatgggatcaacc	11	10	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56346633	A	A	56346633	3	1	215	1	0	0	0	0	1	0	0	0	4505	1232	43	4	1937	4	DGKA	12	56346633	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	3145050	56346633	77505262	286	167688											
LRP1	4035	broad.mit.edu	37	chr12	57570765	57570765	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgagggctcccaggatttcAcacattcatgcacagctccc	8	15	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57570765	T	T	57570765	1	4	215	0	1	0	0	0	0	0	0	0	9038	174	6	5		5	LRP1	12	57570765	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	1224132	57570765	76281130	287	167689											
LRP1	4035	broad.mit.edu	37	chr12	57588639	57588639	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagactcagagactctgcctCtagctgctgctgagcccccc	9	17	3	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57588639	G	G	57588639	1	3	215	0	1	0	0	0	0	0	0	0	9038	928	32	4		4	LRP1	12	57588639	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	17874	57588639	76263256	288	167690											
GLI1	2735	broad.mit.edu	37	chr12	57858560	57858560	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacctgcagacggttatcCgcacctcacccagctccctc	8	18	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57858560	T	T	57858560	3	4	215	1	0	0	0	0	1	0	0	0	6501	652	23	4	308	4	GLI1	12	57858560	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	269921	57858560	75993335	289	167691											
GLI1	2735	broad.mit.edu	37	chr12	57858976	57858976	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccagccttgtggtccccatGactctgcccggggtgggatg	14	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57858976	T	T	57858976	3	4	215	1	0	0	0	0	1	0	0	0	6501	1290	45	3	486	3	GLI1	12	57858976	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	416	57858976	75992919	290	167692											
AGAP2	116986	broad.mit.edu	37	chr12	58128016	58128016	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctactcctctggacccaatCcagatgaagacctgggaaac	8	13	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58128016	A	A	58128016	1	1	215	0	1	0	0	0	0	0	0	0	368	870	30	3		3	AGAP2	12	58128016	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	269040	58128016	75723879	291	167693											
SRGAP1	57522	broad.mit.edu	37	chr12	64491115	64491115	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtgggctggaaaaccccctCtttcctaaggaaagatttaa	9	10	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64491115	T	T	64491115	2	4	215	1	0	0	0	0	0	0	0	1	15263	900	32	4		4	SRGAP1	12	64491115	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	6363099	64491115	69360780	292	167694											
SLC6A15	55117	broad.mit.edu	37	chr12	85285942	85285942	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaaaactccCttatggcaaatgtgttaact	4	6	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85285942	G	G	85285942	1	3	215	0	1	0	0	0	0	0	0	0	14792	696	24	4		4	SLC6A15	12	85285942	5'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	20794827	85285942	48565953	293	167695											
MRPL42	28977	broad.mit.edu	37	chr12	93870594	93870594	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	actgagtcttgtttgttgttGaatccctagcccctagcaca	8	11	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93870594	C	C	93870594	1	2	215	0	1	0	0	0	0	0	0	0	9900	1305	45	4		4	MRPL42	12	93870594	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	8584652	93870594	39981301	294	167696											
CDK17	5128	broad.mit.edu	37	chr12	96691534	96691534	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaattgtttagtctgtGgcagtctttataaaaacctg	8	5	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96691534	A	A	96691534	1	1	215	0	1	0	0	0	0	0	0	0	3163	1363	47	4		4	CDK17	12	96691534	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	2820940	96691534	37160361	295	167697											
PAH	5053	broad.mit.edu	37	chr12	103298606	103298606	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagtagactatgcacaccaCagtccccctgctctaccaag	7	16	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103298606	A	A	103298606	1	1	215	0	1	0	0	0	0	0	0	0	11488	493	17	3		3	PAH	12	103298606	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	6607072	103298606	30553289	296	167698											
STAB2	55576	broad.mit.edu	37	chr12	104092771	104092771	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacttccacttggacaagCtgttgttcctctttgtaatc	6	10	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104092771	A	A	104092771	1	1	215	0	1	0	0	0	0	0	0	0	15356	812	28	3		3	STAB2	12	104092771	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	794165	104092771	29759124	297	167699											
STAB2	55576	broad.mit.edu	37	chr12	104109567	104109567	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccagactggatttccaggCcagatgttggctttttgttt	10	8	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104109567	T	T	104109567	1	4	215	0	1	0	0	0	0	0	0	0	15356	754	26	4		4	STAB2	12	104109567	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	16796	104109567	29742328	298	167700											
STAB2	55576	broad.mit.edu	37	chr12	104160050	104160050	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccctgcccccttacaacCctctcttttccaggactctg	5	18	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104160050	A	A	104160050	1	1	215	0	1	0	0	0	0	0	0	0	15356	638	22	2		2	STAB2	12	104160050	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	50483	104160050	29691845	299	167701											
ACACB	32	broad.mit.edu	37	chr12	109604846	109604846	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtccgattggggtgcagGggcccctcctctcagctgga	17	12	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109604846	T	T	109604846	1	4	215	0	1	0	0	0	0	0	0	0	107	1247	43	2		2	ACACB	12	109604846	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	5444796	109604846	24247049	300	167702											
LHX5	64211	broad.mit.edu	37	chr12	113907096	113907096	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgctccgggccttgcgcacCaggtcgctgggcgagatgcc	15	14	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113907096	A	A	113907096	2	1	215	1	0	0	0	0	0	0	0	1	8846	581	21	2		2	LHX5	12	113907096	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	4302250	113907096	19944799	301	167703											
TBX5	6910	broad.mit.edu	37	chr12	114793888	114793888	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagggcttcttatagggatGgtctgtggtggaacattctt	14	5	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114793888	A	A	114793888	3	1	215	1	0	0	0	0	1	0	0	0	15783	1348	47	4	554	4	TBX5	12	114793888	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	886792	114793888	19058007	302	167704											
RPLP0	6175	broad.mit.edu	37	chr12	120636469	120636469	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaaaggagaagggggagAtgttgagcatgttcagcagc	16	7	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120636469	C	C	120636469	3	2	215	1	0	0	0	0	1	0	0	0	13715	333	12	5	426	5	RPLP0	12	120636469	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	5842581	120636469	13215426	303	167705											
PIWIL1	9271	broad.mit.edu	37	chr12	130839341	130839341	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaactgctttgtctcctGggaattcccactcaccatca	5	13	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130839341	A	A	130839341	1	1	215	0	1	0	0	0	0	0	0	0	12052	1363	47	4		4	PIWIL1	12	130839341	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	10202872	130839341	3012554	304	167706											
ATP12A	479	broad.mit.edu	37	chr13	25280381	25280381	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agagaggcttcagccagcatCctgcctggaacagtgtttca	11	11	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25280381	A	A	25280381	1	1	215	0	1	0	0	0	0	0	0	0	1126	870	30	3		3	ATP12A	13	25280381	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08		25280381	89889497	305	167707											
TRPC4	7223	broad.mit.edu	37	chr13	38237654	38237654	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatttaggccatttgcaaaTgctagcaacacaaggcagta	9	8	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38237654	C	C	38237654	2	2	215	1	0	0	0	0	0	0	0	1	16705	1451	51	5		5	TRPC4	13	38237654	Silent	SNP	T	TCGA-75-5146-01A-01D-1625-08	12957273	38237654	76932224	306	167708											
CKAP2	26586	broad.mit.edu	37	chr13	53036592	53036592	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgagcctgcaggacaaaatGaaaaaccagttgggtctttt	10	7	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53036592	A	A	53036592	3	1	215	1	0	0	0	0	1	0	0	0	3473	1291	45	4	1216	4	CKAP2	13	53036592	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	14798938	53036592	62133286	307	167709											
SLITRK1	114798	broad.mit.edu	37	chr13	84454814	84454814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcaaaggtctcttcttGggcagggggcgccgggagac	18	9	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84454814	T	T	84454814	3	4	215	1	0	0	0	0	1	0	0	0	14856	1357	47	2	1265	2	SLITRK1	13	84454814	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	31418222	84454814	30715064	308	167710											
SLC15A1	6564	broad.mit.edu	37	chr13	99340562	99340562	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtagaaagtattgaaattAggttgacattgtggcggaat	13	2	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99340562	T	T	99340562	2	4	215	1	0	0	0	0	0	0	0	1	14511	407	15	5		5	SLC15A1	13	99340562	Silent	SNP	A	TCGA-75-5146-01A-01D-1625-08	14885748	99340562	15829316	309	167711											
ZIC2	7546	broad.mit.edu	37	chr13	100634871	100634871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcgcctcgggctgcccGgcgaggtgttcgggcgctcg	18	13	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100634871	T	T	100634871	3	4	215	1	0	0	0	0	1	0	0	0	17805	1116	39	1	555	1	ZIC2	13	100634871	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	1294309	100634871	14535007	310	167712											
GRTP1	79774	broad.mit.edu	37	chr13	114005389	114005389	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgggttccacttgggacTtacggactggttttcaccct	10	12	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114005389	C	C	114005389	1	2	215	0	1	0	0	0	0	0	0	0	6876	1624	56	5		5	GRTP1	13	114005389	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	13370518	114005389	1164489	311	167713											
JUB	84962	broad.mit.edu	37	chr14	23447671	23447671	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgagaagagaaaagtGtcacactctactcccccagg	10	12	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23447671	A	A	23447671	1	1	215	0	1	0	0	0	0	0	0	0	8038	1392	48	4		4	JUB	14	23447671	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08		23447671	83901869	312	167714											
KIAA0586	9786	broad.mit.edu	37	chr14	58988420	58988420	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaaacaaaaagtggattctCtcttagaaaacctagaagaa	6	6	2	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58988420	T	T	58988420	1	4	215	0	1	0	0	0	0	0	0	0	8256	928	32	4		4	KIAA0586	14	58988420	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	35540749	58988420	48361120	313	167715											
FUT8	2530	broad.mit.edu	37	chr14	66028456	66028456	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttaaaacaacagaatgaaGacttgaggcgaatggccgaa	11	7	0	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66028456	A	A	66028456	3	1	215	1	0	0	0	0	1	0	0	0	6170	942	33	4	177	4	FUT8	14	66028456	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	7040036	66028456	41321084	314	167716											
FUT8	2530	broad.mit.edu	37	chr14	66200203	66200203	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttaatgttcattattgtgActcaggtgcaatttttctga	8	5	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66200203	T	T	66200203	1	4	215	0	1	0	0	0	0	0	0	0	6170	290	10	5		5	FUT8	14	66200203	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	171747	66200203	41149337	315	167717											
LTBP2	4053	broad.mit.edu	37	chr14	75022418	75022418	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggagacaaccgcggcacGggggtttgcaccctgggaac	16	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75022418	T	T	75022418	1	4	215	0	1	0	0	0	0	0	0	0	9161	1131	39	1		1	LTBP2	14	75022418	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	8822215	75022418	32327122	316	167718											
TTLL5	23093	broad.mit.edu	37	chr14	76201666	76201666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcagggagcctgaaggaGgcttactgggaagtggcggc	18	8	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76201666	T	T	76201666	1	4	215	0	1	0	0	0	0	0	0	0	16856	1015	35	2		2	TTLL5	14	76201666	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1179248	76201666	31147874	317	167719											
DICER1	23405	broad.mit.edu	37	chr14	95571630	95571630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaatacaaagcgcacacaCaaaagaaaaaaaaaaagacc	4	8	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95571630	A	A	95571630	1	1	215	0	1	0	0	0	0	0	0	0	4561	493	17	3		3	DICER1	14	95571630	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	19369964	95571630	11777910	318	167720											
C15orf2	23742	broad.mit.edu	37	chr15	24922411	24922411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactctcctctggctcttcCtgctgaccttgttcccattt	5	15	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24922411	A	A	24922411	3	1	215	1	0	0	0	0	1	0	0	0	1797	681	24	2	1399	2	C15orf2	15	24922411	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08		24922411	77608981	319	167721											
C15orf2	23742	broad.mit.edu	37	chr15	24923271	24923271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtttgcctgcacagtcaGtcagggcaccagctacagct	10	14	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24923271	T	T	24923271	3	4	215	1	0	0	0	0	1	0	0	0	1797	1029	36	3	2259	3	C15orf2	15	24923271	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	860	24923271	77608121	320	167722											
SNRPN	6638	broad.mit.edu	37	chr15	25220717	25220717	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgggaagggaaggccagaGctggagtaagggatttccga	18	5	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25220717	T	T	25220717	1	4	215	0	1	0	0	0	0	0	0	0	14984	986	34	3		3	SNRPN	15	25220717	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	297446	25220717	77310675	321	167723											
GABRB3	2562	broad.mit.edu	37	chr15	27128289	27128289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgggtcggtgcagccCagggacctgtgtctgtcttt	16	10	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27128289	A	A	27128289	1	1	215	0	1	0	0	0	0	0	0	0	6228	609	21	2		2	GABRB3	15	27128289	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1907572	27128289	75403103	322	167724											
GABRA5	2558	broad.mit.edu	37	chr15	27182452	27182452	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggggcagacggtgggcaCtgagaacatcagcaccagca	15	10	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182452	A	A	27182452	3	1	215	1	0	0	0	0	1	0	0	0	6224	565	20	3	723	3	GABRA5	15	27182452	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	54163	27182452	75348940	323	167725											
SPTBN5	51332	broad.mit.edu	37	chr15	42147077	42147077	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatagcgcctgggtgcacccCgctccagggtgcctgccaac	13	16	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42147077	A	A	42147077	3	1	215	1	0	0	0	0	1	0	0	0	15240	652	23	1	1555	1	SPTBN5	15	42147077	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	14964625	42147077	60384315	324	167726											
ZNF280D	54816	broad.mit.edu	37	chr15	56946704	56946704	+	Intron	DEL	A	-	-													cacactagagtaatgcccctAaaaaaaaaagcattaaaaaa							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	56946704	-	-	56946704	6	5	215	0	1	1	0	1	0	0	0	0	17943	377	13	0		0	ZNF280D	15	56946704	Intron	DEL	A	TCGA-75-5146-01A-01D-1625-08	14799627	56946704	45584688	325	167727											
ITGA11	22801	broad.mit.edu	37	chr15	68661644	68661644	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggaaggaagagaagatgaGcaaagacattgggggaggta	18	2	0	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68661644	A	A	68661644	1	1	215	0	1	0	0	0	0	0	0	0	7944	986	34	4		4	ITGA11	15	68661644	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	11714940	68661644	33869748	326	167728											
TM6SF1	53346	broad.mit.edu	37	chr15	83790637	83790637	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagtattctaagacaaacaTaccaagtcaagatttttttg	5	6	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83790637	C	C	83790637	1	2	215	0	1	0	0	0	0	0	0	0	16095	1421	49	5		5	TM6SF1	15	83790637	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	15128993	83790637	18740755	327	167729											
IQGAP1	8826	broad.mit.edu	37	chr15	91037916	91037916	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtagatggttacttaTagaaagtgacatgatgtgat	11	3	1	6			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91037916	C	C	91037916	1	2	215	0	1	0	0	0	0	0	0	0	7884	1421	49	5		5	IQGAP1	15	91037916	Intron	SNP	T	TCGA-75-5146-01A-01D-1625-08	7247279	91037916	11493476	328	167730											
ST8SIA2	8128	broad.mit.edu	37	chr15	92977636	92977636	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttacctacaggacaagaggtAgacttggtcttgagcataca	10	8	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92977636	T	T	92977636	1	4	215	0	1	0	0	0	0	0	0	0	15350	435	15	5		5	ST8SIA2	15	92977636	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	1939720	92977636	9553756	329	167731											
ADAMTS17	170691	broad.mit.edu	37	chr15	100636656	100636656	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctctttggctgcagacCcgatgatgccgtcacagccg	11	14	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100636656	A	A	100636656	3	1	215	1	0	0	0	0	1	0	0	0	262	623	22	2	1277	2	ADAMTS17	15	100636656	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	7659020	100636656	1894736	330	167732											
ABCA3	21	broad.mit.edu	37	chr16	2373438	2373438	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtatttcttcaagaaatActtttgcaaagtggggctgc	9	6	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2373438	G	G	2373438	1	3	215	0	1	0	0	0	0	0	0	0	33	406	14	5		5	ABCA3	16	2373438	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08		2373438	87981315	331	167733											
FAM18A	780776	broad.mit.edu	37	chr16	10865432	10865432	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaacattggcagcctggcgGatatgttacattacaaaccg	9	9	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10865432	T	T	10865432	1	4	215	0	1	0	0	0	0	0	0	0	5565	1189	41	3		3	FAM18A	16	10865432	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	8491994	10865432	79489321	332	167734											
IL21R	50615	broad.mit.edu	37	chr16	27445756	27445756	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaacctccaccccagcacGctcacccttacctggtaagt	7	17	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27445756	T	T	27445756	2	4	215	1	0	0	0	0	0	0	0	1	7741	1074	38	3		3	IL21R	16	27445756	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	16580324	27445756	62908997	333	167735											
SALL1	6299	broad.mit.edu	37	chr16	51176012	51176012	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccggccacagacgtgggcatCcttgctcttagtagggcgac	13	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51176012	G	G	51176012	3	3	215	1	0	0	0	0	1	0	0	0	13921	855	30	4	3861	4	SALL1	16	51176012	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	23730256	51176012	39178741	334	167736											
GPR56	9289	broad.mit.edu	37	chr16	57690573	57690573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccacaccccaggccgtGtgcttgttctgtgcaagcac	11	15	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57690573	T	T	57690573	1	4	215	0	1	0	0	0	0	0	0	0	6765	1392	48	3		3	GPR56	16	57690573	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	6514561	57690573	32664180	335	167737											
CDH11	1009	broad.mit.edu	37	chr16	65032451	65032451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagcagagcaggcctccCacaccgtacgcacccacatt	9	16	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65032451	A	A	65032451	1	1	215	0	1	0	0	0	0	0	0	0	3127	609	21	2		2	CDH11	16	65032451	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	7341878	65032451	25322302	336	167738											
TXNL4B	54957	broad.mit.edu	37	chr16	72124580	72124580	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacctgagaaccaacaccttCtcagcagtactttttatcgc	5	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72124580	A	A	72124580	3	1	215	1	0	0	0	0	1	0	0	0	16932	912	32	3	392	3	TXNL4B	16	72124580	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	7092129	72124580	18230173	337	167739											
WDR59	79726	broad.mit.edu	37	chr16	74999643	74999643	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcgtttccagaaatcatGgcagacaaactcggcaagct	8	10	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74999643	T	T	74999643	1	4	215	0	1	0	0	0	0	0	0	0	17435	1363	47	2		2	WDR59	16	74999643	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	2875063	74999643	15355110	338	167740											
ADAMTS18	170692	broad.mit.edu	37	chr16	77369512	77369512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatcaacacatcacatgtaCcccataaatatgtataacca	3	11	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77369512	A	A	77369512	1	1	215	0	1	0	0	0	0	0	0	0	263	522	18	3		3	ADAMTS18	16	77369512	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	2369869	77369512	12985241	339	167741											
OR3A1	4994	broad.mit.edu	37	chr17	3195311	3195311	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgctggagcaggagagcTggaagagctgtgggaggtca	21	5	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3195311	C	C	3195311	3	2	215	1	0	0	0	0	1	0	0	0	11131	1580	55	5	385	5	OR3A1	17	3195311	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08		3195311	77999899	340	167742											
WSCD1	23302	broad.mit.edu	37	chr17	6024017	6024017	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgccgcccccgctgagtgaCgcaatcgcaccacggggctg	13	18	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6024017	T	T	6024017	1	4	215	0	1	0	0	0	0	0	0	0	17533	551	19	4		4	WSCD1	17	6024017	3'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	2828706	6024017	75171193	341	167743											
FXR2	9513	broad.mit.edu	37	chr17	7495160	7495160	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaggttttatgaaaccccAttcaccatactacccaactc	5	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7495160	T	T	7495160	3	4	215	1	0	0	0	0	1	0	0	0	6176	214	8	5		5	FXR2	17	7495160	Missense_Mutation	SNP	A	TCGA-75-5146-01A-01D-1625-08	1471143	7495160	73700050	342	167744											
TP53	7157	broad.mit.edu	37	chr17	7577105	7577105	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcgccggtctctcccaGgacaggcacaaacacgcacc	10	17	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7577105	T	T	7577105	3	4	215	1	0	0	0	0	1	0	0	0	16505	1000	35	2	453	2	TP53	17	7577105	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	81945	7577105	73618105	343	167745											
TP53	7157	broad.mit.edu	37	chr17	7577138	7577138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgcacctcaaagctgttcCgtcccagtagattaccacta	6	15	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7577138	A	A	7577138	3	1	215	1	0	0	0	0	1	0	0	0	16505	652	23	1	486	1	TP53	17	7577138	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	33	7577138	73618072	344	167746											
SLC25A35	399512	broad.mit.edu	37	chr17	8195771	8195771	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggattggatctgttgGgtgcaggcagaaagctaggg	19	5	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8195771	A	A	8195771	1	1	215	0	1	0	0	0	0	0	0	0	14613	1247	43	4		4	SLC25A35	17	8195771	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	618633	8195771	72999439	345	167747											
PIK3R6	146850	broad.mit.edu	37	chr17	8731976	8731976	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagccgggacacgccgggCagcatttccccatccccact	10	18	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8731976	A	A	8731976	2	1	215	1	0	0	0	0	0	0	0	1	12018	697	25	3		3	PIK3R6	17	8731976	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	536205	8731976	72463234	346	167748											
PIK3R5	23533	broad.mit.edu	37	chr17	8785177	8785177	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttctccaggttgctccagcGacttcgtccactgatggccc	9	16	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8785177	A	A	8785177	3	1	215	1	0	0	0	0	1	0	0	0	12017	1058	37	4	431	4	PIK3R5	17	8785177	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	53201	8785177	72410033	347	167749											
PIK3R5	23533	broad.mit.edu	37	chr17	8787937	8787937	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagactggggcccaggaacaCacgagtccagctctgggtcc	13	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8787937	G	G	8787937	1	3	215	0	1	0	0	0	0	0	0	0	12017	493	17	4		4	PIK3R5	17	8787937	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	2760	8787937	72407273	348	167750											
PIK3R5	23533	broad.mit.edu	37	chr17	8792128	8792128	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcctccacctcctcctcctCctcttcctcctcttcatcat	0	23	4	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8792128	G	G	8792128	3	3	215	1	0	0	0	0	1	0	0	0	12017	864	30	4	1706	4	PIK3R5	17	8792128	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	4191	8792128	72403082	349	167751											
GAS7	8522	broad.mit.edu	37	chr17	9850262	9850262	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttcagcagctgctgttcCggcatcgtgtctgggtgagg	16	9	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9850262	A	A	9850262	2	1	215	1	0	0	0	0	0	0	0	1	6312	639	23	1		1	GAS7	17	9850262	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	1058134	9850262	71344948	350	167752											
MYH8	4626	broad.mit.edu	37	chr17	10310342	10310342	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaaaagttctatttcaGgttgttttttgtaattatat	7	2	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10310342	T	T	10310342	1	4	215	0	1	0	0	0	0	0	0	0	10135	1015	35	2		2	MYH8	17	10310342	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	460080	10310342	70884868	351	167753											
MYH1	4619	broad.mit.edu	37	chr17	10399302	10399302	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgaacacgctcactggcatCcaggagctcctgttctgcga	10	14	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10399302	T	T	10399302	3	4	215	1	0	0	0	0	1	0	0	0	10123	855	30	4	709	4	MYH1	17	10399302	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	88960	10399302	70795908	352	167754											
MYH3	4621	broad.mit.edu	37	chr17	10544690	10544690	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcttgttcaggttttcCtaagagaaaaaaaaaatgac	7	6	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10544690	A	A	10544690	5	1	215	1	0	0	0	0	0	0	1	0	10130	695	24	2	3959	2	MYH3	17	10544690	Splice_Site	SNP	C	TCGA-75-5146-01A-01D-1625-08	145388	10544690	70650520	353	167755											
DNAH9	1770	broad.mit.edu	37	chr17	11572592	11572592	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcaggtactggagctgcaGccatcctgccctccaactgt	9	14	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11572592	C	C	11572592	1	2	215	0	1	0	0	0	0	0	0	0	4648	986	34	4		4	DNAH9	17	11572592	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1027902	11572592	69622618	354	167756											
LLGL1	3996	broad.mit.edu	37	chr17	18145251	18145251	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cgcttctccctaagtgcccgGaacatcacagagccgctctg	9	16	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18145251	C	C	18145251	2	2	215	1	0	0	0	0	0	0	0	1	8907	1161	41	4		4	LLGL1	17	18145251	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	6572659	18145251	63049959	355	167757											
CYTSB	92521	broad.mit.edu	37	chr17	20015301	20015301	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgattgatgatattgctttGatcagggatgatgatgtttt	11	3	1	6			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20015301	A	A	20015301	1	1	215	0	1	0	0	0	0	0	0	0	4243	1305	45	4		4	CYTSB	17	20015301	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1870050	20015301	61179909	356	167758											
KCNJ12	3768	broad.mit.edu	37	chr17	21319603	21319603	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcccgcagctcctacCtggccaatgagatcctgtgg	11	16	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21319603	A	A	21319603	3	1	215	1	0	0	0	0	1	0	0	0	8116	680	24	2	951	2	KCNJ12	17	21319603	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	1304302	21319603	59875607	357	167759											
ERAL1	26284	broad.mit.edu	37	chr17	27182086	27182086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcgcggggctaggcttGttcaatcggtgttaagagtc	16	8	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27182086	A	A	27182086	3	1	215	1	0	0	0	0	1	0	0	0	5244	1377	48	4	36	4	ERAL1	17	27182086	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	5862483	27182086	54013124	358	167760											
CORO6	84940	broad.mit.edu	37	chr17	27946557	27946557	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgggcagggcagggccCtgggacccagcacctccctt	15	15	0	0	rs11650479		TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27946557	A	A	27946557	1	1	215	0	1	0	0	0	0	0	0	0	3790	696	24	2		2	CORO6	17	27946557	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	764471	27946557	53248653	359	167761											
CPD	1362	broad.mit.edu	37	chr17	28750105	28750105	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagccatgttcaatattgctAtgtttcattcagaaaggtcg	8	7	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28750105	G	G	28750105	1	3	215	0	1	0	0	0	0	0	0	0	3830	464	16	5		5	CPD	17	28750105	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	803548	28750105	52445105	360	167762											
UNC45B	146862	broad.mit.edu	37	chr17	33497247	33497247	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttgtccaggacgtccctgcCctgcaggccatgtttgagct	11	13	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33497247	G	G	33497247	2	3	215	1	0	0	0	0	0	0	0	1	17115	610	22	4		4	UNC45B	17	33497247	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	4747142	33497247	47697963	361	167763											
RASL10B	91608	broad.mit.edu	37	chr17	34062078	34062078	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtggaggccgcagaggGcccagggcaagcagaggcag	19	11	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34062078	T	T	34062078	1	4	215	0	1	0	0	0	0	0	0	0	13188	1218	42	3		3	RASL10B	17	34062078	5'UTR	SNP	G	TCGA-75-5146-01A-01D-1625-08	564831	34062078	47133132	362	167764											
ACACA	31	broad.mit.edu	37	chr17	35578665	35578665	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttggatgagatgtgggCagcatgaactggaattccac	13	7	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35578665	A	A	35578665	2	1	215	1	0	0	0	0	0	0	0	1	106	697	25	3		3	ACACA	17	35578665	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	1516587	35578665	45616545	363	167765											
KRTAP4-11	653240	broad.mit.edu	37	chr17	39274174	39274174	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggggtggcagcaggtggGctggcagcacacagactggc	19	10	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39274174	T	T	39274174	3	4	215	1	0	0	0	0	1	0	0	0	8621	1203	42	3	197	3	KRTAP4-11	17	39274174	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	3695509	39274174	41921036	364	167766											
KRT34	3885	broad.mit.edu	37	chr17	39538481	39538481	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcagcccaggctgggcagGcaacaactgtaagacatggt	14	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39538481	T	T	39538481	4	4	215	1	0	0	0	0	0	1	0	0	8542	1195	42	3	1194	3	KRT34	17	39538481	Nonsense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	264307	39538481	41656729	365	167767											
GPATCH8	23131	broad.mit.edu	37	chr17	42512403	42512403	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcagtgagcacctccccAtctcccaatgaatagctttg	6	13	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42512403	T	T	42512403	1	4	215	0	1	0	0	0	0	0	0	0	6659	232	8	5		5	GPATCH8	17	42512403	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	2973922	42512403	38682807	366	167768											
CRHR1	1394	broad.mit.edu	37	chr17	43894044	43894044	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaatgacgatgacaataaCagtaatacctcttgtgggga	10	6	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43894044	T	T	43894044	1	4	215	0	1	0	0	0	0	0	0	0	3903	493	17	4		4	CRHR1	17	43894044	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1381641	43894044	37301166	367	167769											
SDK2	54549	broad.mit.edu	37	chr17	71391459	71391459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcgtcttgccatgccCgtctgaccggctgtacttga	11	14	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71391459	A	A	71391459	3	1	215	1	0	0	0	0	1	0	0	0	14082	652	23	1	3175	1	SDK2	17	71391459	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	27497415	71391459	9803751	368	167770											
ATP5H	10476	broad.mit.edu	37	chr17	73035219	73035219	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggaaagcagaatatccaaGgcaggttcctgccaccaggt	11	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73035219	C	C	73035219	1	2	215	0	1	0	0	0	0	0	0	0	1160	1015	35	4		4	ATP5H	17	73035219	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1643760	73035219	8159991	369	167771											
TSEN54	283989	broad.mit.edu	37	chr17	73513503	73513503	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacattagtgatgctgcccCactttcctggttggccacat	8	14	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73513503	T	T	73513503	1	4	215	0	1	0	0	0	0	0	0	0	16739	609	21	4		4	TSEN54	17	73513503	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	478284	73513503	7681707	370	167772											
USP36	57602	broad.mit.edu	37	chr17	76802167	76802167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggcgattcgtccaactcCtcaccagccaagcacacgca	8	16	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76802167	A	A	76802167	1	1	215	0	1	0	0	0	0	0	0	0	17194	696	24	2		2	USP36	17	76802167	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	3288664	76802167	4393043	371	167773											
ANKRD30B	374860	broad.mit.edu	37	chr18	14797763	14797763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattatatattaatttttgtGtttccgaacccatttagcct	4	8	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14797763	T	T	14797763	1	4	215	0	1	0	0	0	0	0	0	0	659	1392	48	3		3	ANKRD30B	18	14797763	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08		14797763	63279485	372	167774											
C18orf45	85019	broad.mit.edu	37	chr18	20953578	20953578	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctgcataggccaagttatCctgcttctaaaaggaaggac	9	9	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20953578	G	G	20953578	1	3	215	0	1	0	0	0	0	0	0	0	1921	870	30	4		4	C18orf45	18	20953578	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	6155815	20953578	57123670	373	167775											
LAMA3	3909	broad.mit.edu	37	chr18	21494657	21494657	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tattatctaaattcattttaAacagaatttatcagtttgca	3	5	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21494657	T	T	21494657	1	4	215	0	1	0	0	0	0	0	0	0	8679	29	1	5		5	LAMA3	18	21494657	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	541079	21494657	56582591	374	167776											
DTNA	1837	broad.mit.edu	37	chr18	32395764	32395764	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttcttcagatattagAcatttattgagtgctctttt	6	6	4	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32395764	T	T	32395764	1	4	215	0	1	0	0	0	0	0	0	0	4828	290	10	5		5	DTNA	18	32395764	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	10901107	32395764	45681484	375	167777											
ZNF397	84307	broad.mit.edu	37	chr18	32823239	32823239	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgaaatcctggaaaccaTgcctttcccctaaaagtggt	8	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32823239	C	C	32823239	3	2	215	1	0	0	0	0	1	0	0	0	18010	1464	51	5	544	5	ZNF397	18	32823239	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	427475	32823239	45254009	376	167778											
CELF4	56853	broad.mit.edu	37	chr18	34855235	34855235	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattaggagatgcttacccGggccagggaccgggctgcgc	15	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34855235	A	A	34855235	1	1	215	0	1	0	0	0	0	0	0	0	3248	1131	39	4		4	CELF4	18	34855235	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	2031996	34855235	43222013	377	167779											
PSTPIP2	9050	broad.mit.edu	37	chr18	43572056	43572056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaaataacactccccaccCcactgccccattcacctggt	4	18	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43572056	A	A	43572056	1	1	215	0	1	0	0	0	0	0	0	0	12828	638	22	2		2	PSTPIP2	18	43572056	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	8716821	43572056	34505192	378	167780											
PIGN	23556	broad.mit.edu	37	chr18	59828461	59828461	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaacactaatcttctcgcTggaggaggcaatggtgtaaa	10	8	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59828461	A	A	59828461	2	1	215	1	0	0	0	0	0	0	0	1	11988	1567	55	5		5	PIGN	18	59828461	Silent	SNP	T	TCGA-75-5146-01A-01D-1625-08	16256405	59828461	18248787	379	167781											
STK11	6794	broad.mit.edu	37	chr19	1220699	1220699	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcaaggtggacatctgGtcggctggggtcaccctgta	15	10	3	0	rs137853082		TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1220699	T	T	1220699	3	4	215	1	0	0	0	0	1	0	0	0	15405	1270	44	3	735	3	STK11	19	1220699	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08		1220699	57908284	380	167782											
ATP8B3	148229	broad.mit.edu	37	chr19	1785454	1785454	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaaggccccggggaggtgAggaccttgcccacctccatg	13	15	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1785454	G	G	1785454	1	3	215	0	1	0	0	0	0	0	0	0	1200	319	11	5		5	ATP8B3	19	1785454	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08	564755	1785454	57343529	381	167783											
FSD1	79187	broad.mit.edu	37	chr19	4306191	4306191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgattctggctgttccgacCcaggcgaactcggcgaaggt	13	13	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4306191	A	A	4306191	1	1	215	0	1	0	0	0	0	0	0	0	6130	638	22	2		2	FSD1	19	4306191	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	2520737	4306191	54822792	382	167784											
OR1M1	125963	broad.mit.edu	37	chr19	9204166	9204166	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccatccctaagatgctGgtgagccttcaaaccgggag	10	12	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9204166	T	T	9204166	2	4	215	1	0	0	0	0	0	0	0	1	11062	1335	47	2		2	OR1M1	19	9204166	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	4897975	9204166	49924817	383	167785											
CYP4F8	11283	broad.mit.edu	37	chr19	15733988	15733988	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggaataaccagttcttcCggtacaaggacttcctgtac	8	11	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15733988	A	A	15733988	2	1	215	1	0	0	0	0	0	0	0	1	4224	643	23	1		1	CYP4F8	19	15733988	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	6529822	15733988	43394995	384	167786											
PIK3R2	5296	broad.mit.edu	37	chr19	18272854	18272854	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaagagcaggaggttgcGcccccaggtgagtcccctgt	15	11	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18272854	T	T	18272854	2	4	215	1	0	0	0	0	0	0	0	1	12014	1074	38	3		3	PIK3R2	19	18272854	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	2538866	18272854	40856129	385	167787											
ZNF737	100129842	broad.mit.edu	37	chr19	20727575	20727575	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cgttcacatttgtagggtttCtctccagtatgaattctctt	7	9	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20727575	A	A	20727575	3	1	215	1	0	0	0	0	1	0	0	0	18255	912	32	3	180	3	ZNF737	19	20727575	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	2454721	20727575	38401408	386	167788											
ZNF492	57615	broad.mit.edu	37	chr19	22847646	22847646	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattcatactggagagaagcCctacaaatgtgaagaatgtg	10	6	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22847646	A	A	22847646	3	1	215	1	0	0	0	0	1	0	0	0	18070	623	22	2	1185	2	ZNF492	19	22847646	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	2120071	22847646	36281337	387	167789											
ZNF536	9745	broad.mit.edu	37	chr19	30936032	30936032	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaccccgtgaacagctaCcaggcttggcagctcatggc	12	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30936032	A	A	30936032	4	1	215	1	0	0	0	0	0	1	0	0	18101	518	18	3	1565	3	ZNF536	19	30936032	Nonsense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	8088386	30936032	28192951	388	167790											
DMRTC2	63946	broad.mit.edu	37	chr19	42354807	42354807	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatggatagggatggctggGaaatggagatcactgaagta	17	3	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42354807	A	A	42354807	1	1	215	0	1	0	0	0	0	0	0	0	4631	1189	41	4		4	DMRTC2	19	42354807	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	11418775	42354807	16774176	389	167791											
XRCC1	7515	broad.mit.edu	37	chr19	44049939	44049939	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaactgagaagagaaaatgCcacttcaggagggatggggg	16	5	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44049939	T	T	44049939	1	4	215	0	1	0	0	0	0	0	0	0	17579	754	26	4		4	XRCC1	19	44049939	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1695132	44049939	15079044	390	167792											
ZNF223	7766	broad.mit.edu	37	chr19	44564659	44564659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcactgaggaggagctgGggctgctggaccttgcccag	15	11	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44564659	T	T	44564659	3	4	215	1	0	0	0	0	1	0	0	0	17903	1232	43	2	73	2	ZNF223	19	44564659	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	514720	44564659	14564324	391	167793											
ZNF285	26974	broad.mit.edu	37	chr19	44891421	44891421	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgatggttgtgaagggaaGagctgcgcctgaagcccttg	16	7	0	4			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44891421	A	A	44891421	3	1	215	1	0	0	0	0	1	0	0	0	17948	942	33	4	790	4	ZNF285	19	44891421	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	326762	44891421	14237562	392	167794											
POLD1	5424	broad.mit.edu	37	chr19	50906870	50906870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggtgagggctgggcagGtgggaggcttctctcagatg	18	7	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50906870	T	T	50906870	1	4	215	0	1	0	0	0	0	0	0	0	12285	1276	44	3		3	POLD1	19	50906870	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	6015449	50906870	8222113	393	167795											
ZNF665	79788	broad.mit.edu	37	chr19	53668353	53668353	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	attttgtgtgaagaccttacCgcagtcattacatttgtaag	8	7	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53668353	G	G	53668353	3	3	215	1	0	0	0	0	1	0	0	0	18200	652	23	4	650	4	ZNF665	19	53668353	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	2761483	53668353	5460630	394	167796											
BIRC8	112401	broad.mit.edu	37	chr19	53793228	53793228	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccagatgtttgaattctttCctccattattttcttaacgt	4	10	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53793228	A	A	53793228	4	1	215	1	0	0	0	0	0	1	0	0	1446	864	30	3	314	3	BIRC8	19	53793228	Nonsense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	124875	53793228	5335755	395	167797											
RPS9	6203	broad.mit.edu	37	chr19	54704989	54704989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgggactgcgcaggcgcCgtttggagcccttacgctca	14	12	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54704989	A	A	54704989	1	1	215	0	1	0	0	0	0	0	0	0	13773	667	23	1		1	RPS9	19	54704989	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	911761	54704989	4423994	396	167798											
ZNF71	58491	broad.mit.edu	37	chr19	57132833	57132834	+	Frame_Shift_Ins	INS	-	A	A													tgcagagtgggagccattggINSgaattccccaggggaacaaa							TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57132834	A	A	57132833	7	5	215	1	0	1	1	0	0	0	0	0	18242	1233	43	0	180	0	ZNF71	19	57132833	Frame_Shift_Ins	INS	-	TCGA-75-5146-01A-01D-1625-08	2427844	57132833	1996150	397	167799											
ZNF274	10782	broad.mit.edu	37	chr19	58718580	58718580	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggaaggtaagtagaagGgtgggtagagggacagctta	19	2	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58718580	T	T	58718580	1	4	215	0	1	0	0	0	0	0	0	0	17935	1247	43	2		2	ZNF274	19	58718580	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	1585747	58718580	410403	398	167800											
ZBTB45	84878	broad.mit.edu	37	chr19	59028554	59028554	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcagcaccggggtgccCcgggggacgtgcagccagca	18	13	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59028554	A	A	59028554	3	1	215	1	0	0	0	0	1	0	0	0	17672	623	22	2	1056	2	ZBTB45	19	59028554	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	309974	59028554	100429	399	167801											
NRSN2	80023	broad.mit.edu	37	chr20	333933	333933	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatgcagtgccccccaagcTggagggcatcggtgagggtg	16	11	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	333933	C	C	333933	3	2	215	1	0	0	0	0	1	0	0	0	10758	1580	55	5	275	5	NRSN2	20	333933	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08		333933	62691587	400	167802											
ANGPT4	51378	broad.mit.edu	37	chr20	853683	853683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtagtgccagcggatgcCgtccatcttgtacttgttgt	12	9	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	853683	A	A	853683	3	1	215	1	0	0	0	0	1	0	0	0	612	652	23	1	83	1	ANGPT4	20	853683	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	519750	853683	62171837	401	167803											
C20orf27	54976	broad.mit.edu	37	chr20	3736275	3736275	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctacagcaggagaggtgaggGagggaggcaccttcacttcc	15	10	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3736275	A	A	3736275	1	1	215	0	1	0	0	0	0	0	0	0	2129	1189	41	4		4	C20orf27	20	3736275	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	2882592	3736275	59289245	402	167804											
PRND	23627	broad.mit.edu	37	chr20	4705533	4705533	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accggctgcatcaatgccacCcaggcggcgaaccaggggga	14	14	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4705533	T	T	4705533	2	4	215	1	0	0	0	0	0	0	0	1	12649	610	22	4		4	PRND	20	4705533	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	969258	4705533	58319987	403	167805											
C20orf103	24141	broad.mit.edu	37	chr20	9510205	9510205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttgagaaatctttttacCtccatttccctttttgtttt	3	10	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9510205	A	A	9510205	1	1	215	0	1	0	0	0	0	0	0	0	2097	696	24	2		2	C20orf103	20	9510205	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	4804672	9510205	53515315	404	167806											
SNAP25	6616	broad.mit.edu	37	chr20	10277675	10277675	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgaacgggagcagatggcCatcagtggcggcttcatccg	15	11	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10277675	A	A	10277675	2	1	215	1	0	0	0	0	0	0	0	1	14944	581	21	2		2	SNAP25	20	10277675	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	767470	10277675	52747845	405	167807											
MYLK2	85366	broad.mit.edu	37	chr20	30408290	30408290	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagagggccaagcagcAgccaggaggggctcacctgc	16	13	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30408290	T	T	30408290	2	4	215	1	0	0	0	0	0	0	0	1	10151	175	7	5		5	MYLK2	20	30408290	Silent	SNP	A	TCGA-75-5146-01A-01D-1625-08	20130615	30408290	32617230	406	167808											
XKR7	343702	broad.mit.edu	37	chr20	30584986	30584986	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcgggatggggcctcggCgggagagcgtgcagggaccc	21	10	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30584986	A	A	30584986	3	1	215	1	0	0	0	0	1	0	0	0	17563	768	27	3	1476	3	XKR7	20	30584986	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	176696	30584986	32440534	407	167809											
EMILIN3	90187	broad.mit.edu	37	chr20	39989924	39989924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctagttggcttgccctGgccgcacctgctcagccagc	11	16	2	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39989924	T	T	39989924	3	4	215	1	0	0	0	0	1	0	0	0	5137	1348	47	2	19	2	EMILIN3	20	39989924	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	9404938	39989924	23035596	408	167810											
R3HDML	140902	broad.mit.edu	37	chr20	42965887	42965887	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgataatgcctaatgctacCccagccccggcccagcccga	8	17	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42965887	G	G	42965887	2	3	215	1	0	0	0	0	0	0	0	1	12997	610	22	4		4	R3HDML	20	42965887	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	2975963	42965887	20059633	409	167811											
PPP1R3D	5509	broad.mit.edu	37	chr20	58514033	58514033	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgagagcccagcagggaaatGacaggaggcgcagcttaggt	16	8	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514033	A	A	58514033	1	1	215	0	1	0	0	0	0	0	0	0	12475	1305	45	4		4	PPP1R3D	20	58514033	3'UTR	SNP	G	TCGA-75-5146-01A-01D-1625-08	15548146	58514033	4511487	410	167812											
PPP1R3D	5509	broad.mit.edu	37	chr20	58514537	58514537	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcaccaggcaatgcagggtGaactccaggtcctggctgct	14	12	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58514537	A	A	58514537	2	1	215	1	0	0	0	0	0	0	0	1	12475	1281	45	4		4	PPP1R3D	20	58514537	Silent	SNP	G	TCGA-75-5146-01A-01D-1625-08	504	58514537	4510983	411	167813											
DIDO1	11083	broad.mit.edu	37	chr20	61511339	61511339	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcggacccccgtagtccaCcaaactgcaggggtgcaggc	14	14	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61511339	T	T	61511339	3	4	215	1	0	0	0	0	1	0	0	0	4562	507	18	4	757	4	DIDO1	20	61511339	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	2996802	61511339	1514181	412	167814											
DYRK1A	1859	broad.mit.edu	37	chr21	38850432	38850432	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacatgcaggttacagaagAgggaatttatatcttatagt	9	4	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38850432	G	G	38850432	1	3	215	0	1	0	0	0	0	0	0	0	4894	319	11	5		5	DYRK1A	21	38850432	Intron	SNP	A	TCGA-75-5146-01A-01D-1625-08		38850432	9279463	413	167815											
PKNOX1	5316	broad.mit.edu	37	chr21	44438272	44438272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatcagcctgtcacggtcGtcactccccaaggccaagtg	10	14	3	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44438272	T	T	44438272	3	4	215	1	0	0	0	0	1	0	0	0	12077	1145	40	3	674	3	PKNOX1	21	44438272	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	5587840	44438272	3691623	414	167816											
KRTAP10-9	386676	broad.mit.edu	37	chr21	46047872	46047872	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcccgccagcccagctatTgccgccaggcctcctgtgtg	10	19	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46047872	A	A	46047872	3	1	215	1	0	0	0	0	1	0	0	0	8587	1812	63	5	786	5	KRTAP10-9	21	46047872	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	1609600	46047872	2082023	415	167817											
ADARB1	104	broad.mit.edu	37	chr21	46603320	46603320	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatctttcagaaatcagagCgaggggggtttaggctgaag	14	7	3	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46603320	T	T	46603320	4	4	215	1	0	0	0	0	0	1	0	0	282	760	27	4	1309	4	ADARB1	21	46603320	Nonsense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	555448	46603320	1526575	416	167818											
POTEH	23784	broad.mit.edu	37	chr22	16287667	16287667	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acgttgctcttgccgctcccCctgcaccaggggaagcagtg	12	15	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16287667	T	T	16287667	2	4	215	1	0	0	0	0	0	0	0	1	12363	622	22	4		4	POTEH	22	16287667	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08		16287667	35016899	417	167819											
CECR5	27440	broad.mit.edu	37	chr22	17629314	17629314	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctgccccttcccttcagCcagagttaagaccaaaagga	8	15	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17629314	G	G	17629314	1	3	215	0	1	0	0	0	0	0	0	0	3237	754	26	4		4	CECR5	22	17629314	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1341647	17629314	33675252	418	167820											
ZNF280A	129025	broad.mit.edu	37	chr22	22869678	22869678	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttttgccatagaggtcaCatgatttgcaggctgcgaca	12	9	1	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22869678	A	A	22869678	3	1	215	1	0	0	0	0	1	0	0	0	17940	478	17	3	1355	3	ZNF280A	22	22869678	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	5240364	22869678	28434888	419	167821											
SGSM1	129049	broad.mit.edu	37	chr22	25251515	25251515	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctcccgtcactctctaccaGatccagaagaggcattccag	7	15	3	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25251515	T	T	25251515	5	4	215	1	0	0	0	0	0	0	1	0	14335	956	33	3	699	3	SGSM1	22	25251515	Splice_Site	SNP	G	TCGA-75-5146-01A-01D-1625-08	2381837	25251515	26053051	420	167822											
SEC14L4	284904	broad.mit.edu	37	chr22	30886131	30886131	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctcatcgccttgagactcTgcagcgtctcctcagaggcc	10	15	4	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30886131	G	G	30886131	3	3	215	1	0	0	0	0	1	0	0	0	14097	1580	55	5	46	5	SEC14L4	22	30886131	Missense_Mutation	SNP	T	TCGA-75-5146-01A-01D-1625-08	5634616	30886131	20418435	421	167823											
C22orf28	51493	broad.mit.edu	37	chr22	32808263	32808263	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcgcgaccagcgccgcagCagatgagcaacggcaagcgc	15	14	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32808263	G	G	32808263	1	3	215	0	1	0	0	0	0	0	0	0	2162	725	25	4		4	C22orf28	22	32808263	5'UTR	SNP	C	TCGA-75-5146-01A-01D-1625-08	1922132	32808263	18496303	422	167824											
TTLL12	23170	broad.mit.edu	37	chr22	43570062	43570062	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacctggagaggtcctgCggtccgtgaagacggccgtg	15	10	0	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43570062	T	T	43570062	1	4	215	0	1	0	0	0	0	0	0	0	16851	783	27	4		4	TTLL12	22	43570062	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	10761799	43570062	7734504	423	167825											
PNPLA5	150379	broad.mit.edu	37	chr22	44277543	44277543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccggcacatcgggcagcCacaccaccaacctggaggaa	11	17	0	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44277543	A	A	44277543	3	1	215	1	0	0	0	0	1	0	0	0	12263	595	21	2	203	2	PNPLA5	22	44277543	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	707481	44277543	7027023	424	167826											
FBLN1	2192	broad.mit.edu	37	chr22	45946327	45946327	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctccagatgggtatggctCctgcagcctctgccttcact	10	14	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45946327	T	T	45946327	1	4	215	0	1	0	0	0	0	0	0	0	5755	870	30	4		4	FBLN1	22	45946327	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	1668784	45946327	5358239	425	167827											
SHANK3	85358	broad.mit.edu	37	chr22	51159381	51159381	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcgagggcagcgccccCggcgcggatctgccatccct	13	18	1	0			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51159381	A	A	51159381	2	1	215	1	0	0	0	0	0	0	0	1	14379	639	23	1		1	SHANK3	22	51159381	Silent	SNP	C	TCGA-75-5146-01A-01D-1625-08	5213054	51159381	145185	426	167828											
RABL2B	11158	broad.mit.edu	37	chr22	51216443	51216443	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaaggtggtcagatggcGtctccatctctccctcgtcc	11	14	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51216443	A	A	51216443	1	1	215	0	1	0	0	0	0	0	0	0	13079	1160	40	4		4	RABL2B	22	51216443	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	57062	51216443	88123	427	167829											
HDAC6	10013	broad.mit.edu	37	chrX	48661577	48661577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggctggcactggcttgGtgttggatgagcagttaaat	14	7	0	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48661577	T	T	48661577	3	4	215	1	0	0	0	0	1	0	0	0	7078	1261	44	3	275	3	HDAC6	23	48661577	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08		48661577	106608983	428	167830											
XAGE5	170627	broad.mit.edu	37	chrX	52844156	52844156	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggagctgtctcagtcAaagactggggatgaatgcgg	14	9	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52844156	G	G	52844156	2	3	215	1	0	0	0	0	0	0	0	1	17548	117	5	5		5	XAGE5	23	52844156	Silent	SNP	A	TCGA-75-5146-01A-01D-1625-08	4182579	52844156	102426404	429	167831											
RPS4X	6191	broad.mit.edu	37	chrX	71492503	71492503	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacgtacaaagatctgacatGtcacccagggacccatttca	7	12	3	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71492503	A	A	71492503	1	1	215	0	1	0	0	0	0	0	0	0	13756	1392	48	4		4	RPS4X	23	71492503	3'UTR	SNP	G	TCGA-75-5146-01A-01D-1625-08	18648347	71492503	83778057	430	167832											
ATP7A	538	broad.mit.edu	37	chrX	77298209	77298209	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgactccccagctctgGcaatggctaatgtgggaatt	10	10	2	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77298209	T	T	77298209	3	4	215	1	0	0	0	0	1	0	0	0	1194	1203	42	3	4002	3	ATP7A	23	77298209	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	5805706	77298209	77972351	431	167833											
KLHL4	56062	broad.mit.edu	37	chrX	86869526	86869526	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agaagaggtcaggatggaagGagtagatccaaatgcactaa	13	5	1	3			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86869526	C	C	86869526	3	2	215	1	0	0	0	0	1	0	0	0	8462	1174	41	4	690	4	KLHL4	23	86869526	Missense_Mutation	SNP	G	TCGA-75-5146-01A-01D-1625-08	9571317	86869526	68401034	432	167834											
SPANXN1	494118	broad.mit.edu	37	chrX	144329225	144329225	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaggtgagggtgaaagaaaGacacacagagaagggacggc	17	5	0	5			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144329225	C	C	144329225	1	2	215	0	1	0	0	0	0	0	0	0	15106	957	33	4		4	SPANXN1	23	144329225	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	57459699	144329225	10941335	433	167835											
FMR1	2332	broad.mit.edu	37	chrX	147021996	147021996	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaacatttgtatacctgctGttcaccagatcctgtgctag	7	11	1	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147021996	C	C	147021996	1	2	215	0	1	0	0	0	0	0	0	0	6018	1392	48	4		4	FMR1	23	147021996	Intron	SNP	G	TCGA-75-5146-01A-01D-1625-08	2692771	147021996	8248564	434	167836											
FLNA	2316	broad.mit.edu	37	chrX	153592803	153592803	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagagctacaacccaggCagggtggccagggacacaga	14	12	0	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153592803	A	A	153592803	1	1	215	0	1	0	0	0	0	0	0	0	5991	725	25	3		3	FLNA	23	153592803	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	6570807	153592803	1677757	435	167837											
SPRY3	10251	broad.mit.edu	37	chrX	155003948	155003948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctgagcaatctgcagggCaccctagtgagcacctcttc	10	13	2	2			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155003948	A	A	155003948	3	1	215	1	0	0	0	0	1	0	0	0	15225	710	25	3	417	3	SPRY3	23	155003948	Missense_Mutation	SNP	C	TCGA-75-5146-01A-01D-1625-08	1411145	155003948	266612	436	167838											
IL9R	3581	broad.mit.edu	37	chrX	155233054	155233054	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcagatcctccccaaccCccgagctcagctctggcctg	8	19	3	1			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155233054	G	G	155233054	1	3	215	0	1	0	0	0	0	0	0	0	7778	638	22	4		4	IL9R	23	155233054	Intron	SNP	C	TCGA-75-5146-01A-01D-1625-08	229106	155233054	37506	437	167839											
CDC42	998	broad.mit.edu	37	chr1	22413237	22413237	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaaattgatctcagagatGacccctctactattgagaaa	6	10	3	4			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22413237	A	A	22413237	3	1	216	1	0	0	0	0	1	0	0	0	3101	1290	45	4	378	4	CDC42	1	22413237	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08		22413237	226837384	1	167840											
GNL2	29889	broad.mit.edu	37	chr1	38033912	38033912	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttccagtgtttttctttGttcttcaggttttgcaaata	6	7	4	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38033912	T	T	38033912	3	4	216	1	0	0	0	0	1	0	0	0	6600	1386	48	3	292	3	GNL2	1	38033912	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	15620675	38033912	211216709	2	167841											
PTPRF	5792	broad.mit.edu	37	chr1	44086229	44086229	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagtatatcctgcgtgaGttcaaggtcacggatgcccg	11	13	2	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44086229	A	A	44086229	2	1	216	1	0	0	0	0	0	0	0	1	12909	1020	36	4		4	PTPRF	1	44086229	Silent	SNP	G	TCGA-75-5147-01A-01D-1625-08	6052317	44086229	205164392	3	167842											
INADL	10207	broad.mit.edu	37	chr1	62257135	62257135	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaggtaaatgaatcatttCtattttatatttggaaattg	6	3	2	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62257135	T	T	62257135	1	4	216	0	1	0	0	0	0	0	0	0	7801	928	32	4		4	INADL	1	62257135	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	18170906	62257135	186993486	4	167843											
DNASE2B	58511	broad.mit.edu	37	chr1	84864199	84864199	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgagagcgccttgaaacTcagactccacaatctatggg	10	12	2	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84864199	A	A	84864199	1	1	216	0	1	0	0	0	0	0	0	0	4705	1566	54	5		5	DNASE2B	1	84864199	5'Flank	SNP	T	TCGA-75-5147-01A-01D-1625-08	22607064	84864199	164386422	5	167844											
PKN2	5586	broad.mit.edu	37	chr1	89250394	89250394	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggacggtcaaaagcaacatCagttgcactgcctggttgga	12	9	2	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89250394	T	T	89250394	3	4	216	1	0	0	0	0	1	0	0	0	12075	838	29	4	1084	4	PKN2	1	89250394	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	4386195	89250394	160000227	6	167845											
VTCN1	79679	broad.mit.edu	37	chr1	117695862	117695862	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctggtattggagacttccGagaagttggctccctggtca	13	9	1	2	rs145818315	byFrequency	TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117695862	A	A	117695862	3	1	216	1	0	0	0	0	1	0	0	0	17361	1059	37	4	281	4	VTCN1	1	117695862	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	28445468	117695862	131554759	7	167846											
NBPF10	100132406	broad.mit.edu	37	chr1	145301706	145301706	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttccactgaggcaggtgtgtCtgtcttttctcagaatatga	10	8	3	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145301706	T	T	145301706	1	4	216	0	1	0	0	0	0	0	0	0	10287	928	32	4		4	NBPF10	1	145301706	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	27605844	145301706	103948915	8	167847											
MTMR11	10903	broad.mit.edu	37	chr1	149902157	149902157	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagtagtggagtagcttTccctaaggaactcaagacat	11	7	1	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149902157	C	C	149902157	1	2	216	0	1	0	0	0	0	0	0	0	10034	1798	62	5		5	MTMR11	1	149902157	Intron	SNP	T	TCGA-75-5147-01A-01D-1625-08	4600451	149902157	99348464	9	167848											
TMOD4	29765	broad.mit.edu	37	chr1	151146182	151146182	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcctccaggaggtagaatGctgcgtcacgaagggacact	12	12	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151146182	A	A	151146182	1	1	216	0	1	0	0	0	0	0	0	0	16359	1334	46	4		4	TMOD4	1	151146182	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	1244025	151146182	98104439	10	167849											
CD244	51744	broad.mit.edu	37	chr1	160808748	160808748	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgactgcttctccttcctCtttctcctccacacacagaa	3	18	3	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160808748	G	G	160808748	3	3	216	1	0	0	0	0	1	0	0	0	3017	912	32	4	374	4	CD244	1	160808748	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	9662566	160808748	88441873	11	167850											
C1orf14	81626	broad.mit.edu	37	chr1	182873246	182873246	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaattgctaccctttatttGtatattaagatcactcaaag	5	7	2	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182873246	T	T	182873246	1	4	216	0	1	0	0	0	0	0	0	0	2020	1392	48	3		3	C1orf14	1	182873246	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	22064498	182873246	66377375	12	167851											
PDC	5132	broad.mit.edu	37	chr1	186412962	186412962	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtaactaatactaagaaAtgctaataactcgattgttg	7	5	0	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	186412962	G	G	186412962	1	3	216	0	1	0	0	0	0	0	0	0	11708	116	4	5		5	PDC	1	186412962	3'UTR	SNP	A	TCGA-75-5147-01A-01D-1625-08	3539716	186412962	62837659	13	167852											
NLRP3	114548	broad.mit.edu	37	chr1	247599206	247599206	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagtggcaggtacgggTgcttccttgtccatggtgga	17	8	0	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247599206	G	G	247599206	1	3	216	0	1	0	0	0	0	0	0	0	10573	1711	59	5		5	NLRP3	1	247599206	Intron	SNP	T	TCGA-75-5147-01A-01D-1625-08	61186244	247599206	1651415	14	167853											
GTF3C2	2976	broad.mit.edu	37	chr2	27566478	27566478	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacacaaatgagtagaggaCaaaaactatttgtactagct	7	7	0	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27566478	A	A	27566478	1	1	216	0	1	0	0	0	0	0	0	0	6938	493	17	3		3	GTF3C2	2	27566478	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08		27566478	215632895	15	167854											
ABCG5	64240	broad.mit.edu	37	chr2	44047199	44047199	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaagagagcagcagaaaAatatccaaatcgggcaacct	10	10	0	2	rs79482684		TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44047199	C	C	44047199	3	2	216	1	0	0	0	0	1	0	0	0	71	14	1	5	463	5	ABCG5	2	44047199	Missense_Mutation	SNP	A	TCGA-75-5147-01A-01D-1625-08	16480721	44047199	199152174	16	167855											
FOXN2	3344	broad.mit.edu	37	chr2	48602224	48602224	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtagcatggcagcacagcGttgtgcatccaggtctagcg	13	10	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48602224	A	A	48602224	3	1	216	1	0	0	0	0	1	0	0	0	6080	1145	40	4	956	4	FOXN2	2	48602224	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	4555025	48602224	194597149	17	167856											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48807743	48807743	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagtcaacctatttgattTcttgacaagaccacaatctg	6	10	3	4			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48807743	A	A	48807743	1	1	216	0	1	0	0	0	0	0	0	0	15435	1798	62	5		5	STON1-GTF2A1L	2	48807743	5'UTR	SNP	T	TCGA-75-5147-01A-01D-1625-08	205519	48807743	194391630	18	167857											
NRXN1	9378	broad.mit.edu	37	chr2	50170932	50170932	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgtcatctgtggtctGcaaaagaatcacattcagta	9	7	5	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50170932	A	A	50170932	1	1	216	0	1	0	0	0	0	0	0	0	10760	1334	46	4		4	NRXN1	2	50170932	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	1363189	50170932	193028441	19	167858											
ASPRV1	151516	broad.mit.edu	37	chr2	70188902	70188902	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actagcaggatgggtgcctcAccctctgcatccatccttgg	10	14	2	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70188902	C	C	70188902	1	2	216	0	1	0	0	0	0	0	0	0	1062	174	6	5		5	ASPRV1	2	70188902	5'UTR	SNP	A	TCGA-75-5147-01A-01D-1625-08	20017970	70188902	173010471	20	167859											
ROBO1	6091	broad.mit.edu	37	chr3	78649497	78649497	+	Intron	DEL	T	-	-													ataaatgcaggtgagtaccaTcatacactttcactgtatat							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78649497	-	-	78649497	6	5	216	0	1	1	0	1	0	0	0	0	13624	1450	50	0		0	ROBO1	3	78649497	Intron	DEL	T	TCGA-75-5147-01A-01D-1625-08		78649497	119372933	21	167860											
PLXNA1	5361	broad.mit.edu	37	chr3	126736667	126736668	+	Frame_Shift_Ins	INS	-	C	C													catcggctccacaccctgtaINSccctcaccgtgtcggagacg							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126736668	C	C	126736667	7	5	216	1	0	1	1	0	0	0	0	0	12214	391	14	0	3662	0	PLXNA1	3	126736667	Frame_Shift_Ins	INS	-	TCGA-75-5147-01A-01D-1625-08	48087170	126736667	71285763	22	167861											
TRPC1	7220	broad.mit.edu	37	chr3	142499837	142499837	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaagaatgaatttaagtcGtctaaaacttgctatcaaat	6	5	2	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142499837	A	A	142499837	3	1	216	1	0	0	0	0	1	0	0	0	16703	1145	40	4	842	4	TRPC1	3	142499837	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	15763170	142499837	55522593	23	167862											
SHOX2	6474	broad.mit.edu	37	chr3	157817685	157817685	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaaagcacctacgttgacAtaaggtgcgactctacaagc	8	11	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157817685	G	G	157817685	2	3	216	1	0	0	0	0	0	0	0	1	14402	224	8	5		5	SHOX2	3	157817685	Silent	SNP	A	TCGA-75-5147-01A-01D-1625-08	15317848	157817685	40204745	24	167863											
SMC4	10051	broad.mit.edu	37	chr3	160135665	160135665	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggaagctctaattgcagcttCtgagactctcaaagaaagga	10	8	3	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160135665	G	G	160135665	3	3	216	1	0	0	0	0	1	0	0	0	14899	913	32	4	1630	4	SMC4	3	160135665	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	2317980	160135665	37886765	25	167864											
SLITRK3	22865	broad.mit.edu	37	chr3	164907274	164907274	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagttgataaaggccccatCttggacataggaaatacgat	9	8	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164907274	T	T	164907274	3	4	216	1	0	0	0	0	1	0	0	0	14858	913	32	4	1592	4	SLITRK3	3	164907274	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	4771609	164907274	33115156	26	167865											
PIK3CA	5290	broad.mit.edu	37	chr3	178918931	178918931	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatataaacattttctgttTctacctgatatttacctagt	4	7	2	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178918931	C	C	178918931	1	2	216	0	1	0	0	0	0	0	0	0	12008	1798	62	5		5	PIK3CA	3	178918931	Intron	SNP	T	TCGA-75-5147-01A-01D-1625-08	14011657	178918931	19103499	27	167866											
ZNF595	152687	broad.mit.edu	37	chr4	64928	64928	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatctgcaggcctgcctccaGggccatggctgggtgtgttt	15	11	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64928	C	C	64928	1	2	216	0	1	0	0	0	0	0	0	0	18152	1015	35	4		4	ZNF595	4	64928	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08		64928	191089348	28	167867											
SLC34A2	10568	broad.mit.edu	37	chr4	25678030	25678031	+	Frame_Shift_Ins	INS	-	AA	AA													cctccgactcctgcagtctcINSgctgcccacgcgtcctgccg							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	25678031	AA	AA	25678030	7	5	216	1	0	1	1	0	0	0	0	0	14682	884	31	0	1778	0	SLC34A2	4	25678030	Frame_Shift_Ins	INS	-	TCGA-75-5147-01A-01D-1625-08	25613102	25678030	165476246	29	167868											
CCDC158	339965	broad.mit.edu	37	chr4	77305588	77305591	+	Intron	DEL	AAAT	-	-													tctatgaaataaatgaaagaAaataaataacattgataaaa							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77305591	-	-	77305588	6	5	216	0	1	1	0	1	0	0	0	0	2817	29	1	0		0	CCDC158	4	77305588	Intron	DEL	AAAT	TCGA-75-5147-01A-01D-1625-08	51627558	77305588	113848688	30	167869											
SHROOM3	57619	broad.mit.edu	37	chr4	77631181	77631181	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggcttagaaccctgcaCttagctgtgctgctttgctc	10	12	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77631181	T	T	77631181	1	4	216	0	1	0	0	0	0	0	0	0	14408	580	20	4		4	SHROOM3	4	77631181	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	325593	77631181	113523095	31	167870											
WDFY3	23001	broad.mit.edu	37	chr4	85626531	85626531	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggtacaaagtccaatgacAgaaaaagttccttaccatta	7	8	0	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85626531	T	T	85626531	1	4	216	0	1	0	0	0	0	0	0	0	17397	203	7	5		5	WDFY3	4	85626531	Intron	SNP	A	TCGA-75-5147-01A-01D-1625-08	7995350	85626531	105527745	32	167871											
HEATR7B2	133558	broad.mit.edu	37	chr5	41061528	41061528	+	Intron	DEL	A	-	-													agggatttgaaataggtgggAaaaaagaaaaaattgataaa							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41061528	-	-	41061528	6	5	216	0	1	1	0	1	0	0	0	0	7102	261	9	0		0	HEATR7B2	5	41061528	Intron	DEL	A	TCGA-75-5147-01A-01D-1625-08		41061528	139853732	33	167872											
CAMK4	814	broad.mit.edu	37	chr5	110819778	110819778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaagtgccagcagcagcCatggcagcatccaggagagc	15	11	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110819778	A	A	110819778	3	1	216	1	0	0	0	0	1	0	0	0	2631	594	21	2	1078	2	CAMK4	5	110819778	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	69758250	110819778	70095482	34	167873											
ARSI	340075	broad.mit.edu	37	chr5	149677343	149677343	+	Frame_Shift_Del	DEL	C	-	-													gatctccgtgcgtggtgaggCccggccctcgctgatggccg							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	149677343	-	-	149677343	7	5	216	1	0	1	0	1	0	0	0	0	998	739	26	0	569	0	ARSI	5	149677343	Frame_Shift_Del	DEL	C	TCGA-75-5147-01A-01D-1625-08	38857565	149677343	31237917	35	167874											
RANBP17	64901	broad.mit.edu	37	chr5	170336613	170336613	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttagtaaattttGgtttgctttttcataggtct	6	3	2	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170336613	T	T	170336613	1	4	216	0	1	0	0	0	0	0	0	0	13135	1363	47	2		2	RANBP17	5	170336613	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	20659270	170336613	10578647	36	167875											
HNRNPH1	3187	broad.mit.edu	37	chr5	179045155	179045155	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcacgtacctccaccatAagcaccacgcctcatcctct	3	20	3	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179045155	T	T	179045155	3	4	216	1	0	0	0	0	1	0	0	0	7333	362	13	5	675	5	HNRNPH1	5	179045155	Missense_Mutation	SNP	A	TCGA-75-5147-01A-01D-1625-08	8708542	179045155	1870105	37	167876											
BAT3	7917	broad.mit.edu	37	chr6	31612991	31612991	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatctgaaaaagacagatGgacaggcagatgtgagaaaa	12	4	1	6			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31612991	A	A	31612991	1	1	216	0	1	0	0	0	0	0	0	0	1327	1363	47	4		4	BAT3	6	31612991	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08		31612991	139502076	38	167877											
FTSJD2	23070	broad.mit.edu	37	chr6	37418000	37418000	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagggtgtgtcatatctgTcttactagcctctcttttgt	9	8	4	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37418000	C	C	37418000	1	2	216	0	1	0	0	0	0	0	0	0	6151	1682	58	5		5	FTSJD2	6	37418000	Intron	SNP	T	TCGA-75-5147-01A-01D-1625-08	5805009	37418000	133697067	39	167878											
MRPL14	64928	broad.mit.edu	37	chr6	44084255	44084270	+	Intron	DEL	AAGAACTTAATGGGAA	-	-													ttacacaaagacacagttttAagaacttaatgggaaaagtt							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	44084270	-	-	44084255	6	5	216	0	1	1	0	1	0	0	0	0	9873	377	13	0		0	MRPL14	6	44084255	Intron	DEL	AAGAACTTAATGGGAA	TCGA-75-5147-01A-01D-1625-08	6666255	44084255	127030812	40	167879											
LATS1	9113	broad.mit.edu	37	chr6	150001373	150001373	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taacatgagcgacttgatttCgaagaagaacatctttcttt	7	7	2	4			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150001373	A	A	150001373	3	1	216	1	0	0	0	0	1	0	0	0	8718	884	31	3	1177	3	LATS1	6	150001373	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	105917118	150001373	21113694	41	167880											
TNRC18	84629	broad.mit.edu	37	chr7	5427961	5427961	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgggcggggggcgcccGggctccaggccgaagagctt	20	13	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5427961	A	A	5427961	2	1	216	1	0	0	0	0	0	0	0	1	16462	1103	39	4		4	TNRC18	7	5427961	Silent	SNP	G	TCGA-75-5147-01A-01D-1625-08		5427961	153710702	42	167881											
DNAH11	8701	broad.mit.edu	37	chr7	21920235	21920235	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtatctcactctcaaagttCtttacaagattattgaaaac	4	8	3	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21920235	G	G	21920235	1	3	216	0	1	0	0	0	0	0	0	0	4639	928	32	4		4	DNAH11	7	21920235	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	16492274	21920235	137218428	43	167882											
PDE1C	5137	broad.mit.edu	37	chr7	31862880	31862880	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaactggaaaacaaaaaaatCataccaaagaagagagttag	7	5	1	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31862880	A	A	31862880	1	1	216	0	1	0	0	0	0	0	0	0	11729	841	29	3		3	PDE1C	7	31862880	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	9942645	31862880	127275783	44	167883											
CACNA2D1	781	broad.mit.edu	37	chr7	81978768	81978768	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctctcagaatttcaccaccaGatccacatgagaaatcatat	4	12	3	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81978768	T	T	81978768	1	4	216	0	1	0	0	0	0	0	0	0	2574	957	33	3		3	CACNA2D1	7	81978768	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	50115888	81978768	77159895	45	167884											
ABCB1	5243	broad.mit.edu	37	chr7	87225135	87225135	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttatctttttcactgcAaaacagcaatggaattacat	4	9	3	0	rs56401346		TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87225135	G	G	87225135	1	3	216	0	1	0	0	0	0	0	0	0	40	145	5	5		5	ABCB1	7	87225135	Intron	SNP	A	TCGA-75-5147-01A-01D-1625-08	5246367	87225135	71913528	46	167885											
PON3	5446	broad.mit.edu	37	chr7	94993257	94993257	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcccttgggctgtagaaaaGaacataagtccagcgaagat	10	9	0	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94993257	A	A	94993257	3	1	216	1	0	0	0	0	1	0	0	0	12345	942	33	4	467	4	PON3	7	94993257	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	7768122	94993257	64145406	47	167886											
DYNC1I1	1780	broad.mit.edu	37	chr7	95665044	95665044	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgaggaaggtacagtctaCacggcttgtcgtcatggaag	14	7	2	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95665044	T	T	95665044	2	4	216	1	0	0	0	0	0	0	0	1	4882	489	17	4		4	DYNC1I1	7	95665044	Silent	SNP	C	TCGA-75-5147-01A-01D-1625-08	671787	95665044	63473619	48	167887											
FBXO24	26261	broad.mit.edu	37	chr7	100190473	100190473	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcttggccactcgggagcCgcaggaagtggtgggtacca	16	11	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100190473	T	T	100190473	3	4	216	1	0	0	0	0	1	0	0	0	5792	652	23	4	801	4	FBXO24	7	100190473	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	4525429	100190473	58948190	49	167888											
LAMB1	3912	broad.mit.edu	37	chr7	107566581	107566581	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggcaaggaggagactgGtggctcctttaacaacatag	14	8	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107566581	C	C	107566581	1	2	216	0	1	0	0	0	0	0	0	0	8682	1276	44	4		4	LAMB1	7	107566581	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	7376108	107566581	51572082	50	167889											
MGAM	8972	broad.mit.edu	37	chr7	141750180	141750181	+	Intron	INS	-	T	T													tatatgtgtgattatatttgINStaactttatatgcattattg							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141750181	T	T	141750180	6	5	216	0	1	1	1	0	0	0	0	0	9634	1392	48	0		0	MGAM	7	141750180	Intron	INS	-	TCGA-75-5147-01A-01D-1625-08	34183599	141750180	17388483	51	167890											
KIAA0146	23514	broad.mit.edu	37	chr8	48504694	48504694	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagtgatgcacacttgatGatcggatcaatttaaatatt	8	5	1	4			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48504694	T	T	48504694	1	4	216	0	1	0	0	0	0	0	0	0	8227	1305	45	3		3	KIAA0146	8	48504694	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08		48504694	97859328	52	167891											
CDH17	1015	broad.mit.edu	37	chr8	95182742	95182742	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggatatgaaagtggttttcCgtactcatcctttgcaactg	9	9	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95182742	T	T	95182742	3	4	216	1	0	0	0	0	1	0	0	0	3132	661	23	4	1589	4	CDH17	8	95182742	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	46678048	95182742	51181280	53	167892											
CSMD3	114788	broad.mit.edu	37	chr8	113563024	113563024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactaatttcctttaaaagCatatcattttctggtggacc	5	10	2	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113563024	T	T	113563024	3	4	216	1	0	0	0	0	1	0	0	0	3980	710	25	4	6863	4	CSMD3	8	113563024	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	18380282	113563024	32800998	54	167893											
COL14A1	7373	broad.mit.edu	37	chr8	121295822	121295822	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgctttataatcaaaggaGtaacttttttgaggaaggat	9	3	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121295822	T	T	121295822	1	4	216	0	1	0	0	0	0	0	0	0	3703	1044	36	3		3	COL14A1	8	121295822	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	7732798	121295822	25068200	55	167894											
C8orf31	286122	broad.mit.edu	37	chr8	144124523	144124523	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaggcctgcgggggagaGggcgggaaaggccctcacag	21	9	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144124523	T	T	144124523	1	4	216	0	1	0	0	0	0	0	0	0	2446	1015	35	2		2	C8orf31	8	144124523	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	22828701	144124523	2239499	56	167895											
CPSF1	29894	broad.mit.edu	37	chr8	145620291	145620291	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccttgggcagaccccAcccccgccggcccagcctca	12	20	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145620291	C	C	145620291	1	2	216	0	1	0	0	0	0	0	0	0	3856	174	6	5		5	CPSF1	8	145620291	Intron	SNP	A	TCGA-75-5147-01A-01D-1625-08	1495768	145620291	743731	57	167896											
KDM4C	23081	broad.mit.edu	37	chr9	6986546	6986546	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatgctcatcagtggcagaGagtaatggtgtgttaacaga	12	6	3	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6986546	C	C	6986546	3	2	216	1	0	0	0	0	1	0	0	0	8200	933	33	4	1665	4	KDM4C	9	6986546	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08		6986546	134226885	58	167897											
ZNF484	83744	broad.mit.edu	37	chr9	95609798	95609798	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catgtgtgataaaatgtgacTtccggataaaggccttccca	9	9	0	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95609798	A	A	95609798	3	1	216	1	0	0	0	0	1	0	0	0	18064	1609	56	5	1291	5	ZNF484	9	95609798	Missense_Mutation	SNP	T	TCGA-75-5147-01A-01D-1625-08	88623252	95609798	45603633	59	167898											
ITIH5	80760	broad.mit.edu	37	chr10	7621881	7621881	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcgggtgttgttgaggaTcttgagggtgtgcgtctccc	15	9	3	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7621881	A	A	7621881	3	1	216	1	0	0	0	0	1	0	0	0	7977	1435	50	5	1720	5	ITIH5	10	7621881	Missense_Mutation	SNP	T	TCGA-75-5147-01A-01D-1625-08		7621881	127912866	60	167899											
FAM188A	80013	broad.mit.edu	37	chr10	15838016	15838016	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattaaataatccaatatatCttttgaataaaatcaggtcg	4	6	2	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15838016	A	A	15838016	1	1	216	0	1	0	0	0	0	0	0	0	5560	928	32	3		3	FAM188A	10	15838016	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	8216135	15838016	119696731	61	167900											
C10orf68	79741	broad.mit.edu	37	chr10	32983870	32983870	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattcagtgtcaaaactggAaatgcaaattgaaaaaacca	7	6	2	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32983870	G	G	32983870	3	3	216	1	0	0	0	0	1	0	0	0	1624	246	9	5	343	5	C10orf68	10	32983870	Missense_Mutation	SNP	A	TCGA-75-5147-01A-01D-1625-08	17145854	32983870	102550877	62	167901											
ANK3	288	broad.mit.edu	37	chr10	61946480	61946480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagtgggttaccttattgCtcaggttcacattcgcattt	9	8	2	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61946480	A	A	61946480	3	1	216	1	0	0	0	0	1	0	0	0	622	797	28	3	11496	3	ANK3	10	61946480	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	28962610	61946480	73588267	63	167902											
RNH1	6050	broad.mit.edu	37	chr11	498687	498687	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcatggcctgagatgagcCcaggggcgggggagagctct	17	10	2	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	498687	T	T	498687	1	4	216	0	1	0	0	0	0	0	0	0	13615	638	22	4		4	RNH1	11	498687	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08		498687	134507829	64	167903											
ART1	417	broad.mit.edu	37	chr11	3681250	3681250	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctgcagctcctgggcagCggccagcgtccaccccggtg	14	18	0	0	rs147920431	byFrequency	TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3681250	T	T	3681250	2	4	216	1	0	0	0	0	0	0	0	1	1001	767	27	4		4	ART1	11	3681250	Silent	SNP	C	TCGA-75-5147-01A-01D-1625-08	3182563	3681250	131325266	65	167904											
CHRNA10	57053	broad.mit.edu	37	chr11	3687800	3687801	+	Intron	DEL	AG	-	-													ccatgtagtacttccctgcaAgagagagagaaagccaattg							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3687801	-	-	3687800	6	5	216	0	1	1	0	1	0	0	0	0	3413	87	3	0		0	CHRNA10	11	3687800	Intron	DEL	AG	TCGA-75-5147-01A-01D-1625-08	6550	3687800	131318716	66	167905											
OR51A7	119687	broad.mit.edu	37	chr11	4929450	4929450	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgttcttgttggtgccgcCccttatgaaccccattgtgt	9	11	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4929450	T	T	4929450	3	4	216	1	0	0	0	0	1	0	0	0	11182	623	22	4	853	4	OR51A7	11	4929450	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	1241650	4929450	130077066	67	167906											
OR2D3	120775	broad.mit.edu	37	chr11	6942529	6942529	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtccctcaagtgttggtTcacttcttggtaaagaggaa	10	7	3	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6942529	C	C	6942529	2	2	216	1	0	0	0	0	0	0	0	1	11089	1770	62	5		5	OR2D3	11	6942529	Silent	SNP	T	TCGA-75-5147-01A-01D-1625-08	2013079	6942529	128063987	68	167907											
OR5AS1	219447	broad.mit.edu	37	chr11	55798207	55798207	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cactacaaatgtttttcttcGcttcttttgctgatgctgag	7	9	2	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55798207	A	A	55798207	3	1	216	1	0	0	0	0	1	0	0	0	11240	1087	38	4	315	4	OR5AS1	11	55798207	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	48855678	55798207	79208309	69	167908											
SHANK2	22941	broad.mit.edu	37	chr11	70331681	70331681	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cggggggataacaaagctatCtacatcttcttccacgagcg	10	11	3	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70331681	G	G	70331681	3	3	216	1	0	0	0	0	1	0	0	0	14378	913	32	4	840	4	SHANK2	11	70331681	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	14533474	70331681	64674835	70	167909											
DDX10	1662	broad.mit.edu	37	chr11	108544261	108544261	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacattgaaaggtaagtAtatggtgatcttgggatgtg	12	2	1	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108544261	G	G	108544261	1	3	216	0	1	0	0	0	0	0	0	0	4375	464	16	5		5	DDX10	11	108544261	Intron	SNP	A	TCGA-75-5147-01A-01D-1625-08	38212580	108544261	26462255	71	167910											
GLB1L2	89944	broad.mit.edu	37	chr11	134212831	134212831	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagatgaaggcctgtggcttGaacaccctcaccacgtaggt	11	11	1	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134212831	T	T	134212831	3	4	216	1	0	0	0	0	1	0	0	0	6493	1281	45	3	276	3	GLB1L2	11	134212831	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	25668570	134212831	793685	72	167911											
SLC6A13	6540	broad.mit.edu	37	chr12	346415	346415	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagctcccagcgcagggccCccaggtgctggatcccatca	11	18	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	346415	G	G	346415	3	3	216	1	0	0	0	0	1	0	0	0	14790	623	22	4	1243	4	SLC6A13	12	346415	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08		346415	133505480	73	167912											
EMG1	10436	broad.mit.edu	37	chr12	7083910	7083910	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcagtagggaagaagggagGaagaggaaaagggagaacta	18	2	1	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7083910	T	T	7083910	1	4	216	0	1	0	0	0	0	0	0	0	5132	1189	41	3		3	EMG1	12	7083910	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	6737495	7083910	126767985	74	167913											
KCNH3	23416	broad.mit.edu	37	chr12	49951815	49951815	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagagtgaaggcagggtgGcagcctccccacggactcca	13	14	1	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49951815	T	T	49951815	1	4	216	0	1	0	0	0	0	0	0	0	8103	1218	42	3		3	KCNH3	12	49951815	3'UTR	SNP	G	TCGA-75-5147-01A-01D-1625-08	42867905	49951815	83900080	75	167914											
ACTR6	64431	broad.mit.edu	37	chr12	100613943	100613943	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtaagtgttgttttatatAgaaacgaaacatggaagtcc	9	4	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100613943	T	T	100613943	1	4	216	0	1	0	0	0	0	0	0	0	216	435	15	5		5	ACTR6	12	100613943	Intron	SNP	A	TCGA-75-5147-01A-01D-1625-08	50662128	100613943	33237952	76	167915											
CIT	11113	broad.mit.edu	37	chr12	120198911	120198911	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caggagccaagctgaggaggGaagactaaacggggacactt	15	8	0	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120198911	A	A	120198911	1	1	216	0	1	0	0	0	0	0	0	0	3469	1189	41	4		4	CIT	12	120198911	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	19584968	120198911	13652984	77	167916											
GOLGA3	2802	broad.mit.edu	37	chr12	133385015	133385015	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccgagggacactggtgcGcaggaaggaatattcttttg	13	10	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133385015	A	A	133385015	3	1	216	1	0	0	0	0	1	0	0	0	6618	1087	38	4	4074	4	GOLGA3	12	133385015	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	13186104	133385015	466880	78	167917											
DCLK1	9201	broad.mit.edu	37	chr13	36379824	36379824	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaacaaaggaaatggtgCgagtcacttacattaaccca	9	8	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36379824	T	T	36379824	1	4	216	0	1	0	0	0	0	0	0	0	4324	783	27	4		4	DCLK1	13	36379824	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08		36379824	78790054	79	167918											
POTEG	404785	broad.mit.edu	37	chr14	19566188	19566188	+	Intron	DEL	G	-	-													tccatgggctggggaaaggtGgggatggtttcagaattatt							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	19566188	-	-	19566188	6	5	216	0	1	1	0	1	0	0	0	0	12362	1363	47	0		0	POTEG	14	19566188	Intron	DEL	G	TCGA-75-5147-01A-01D-1625-08		19566188	87783352	80	167919											
MYH7	4625	broad.mit.edu	37	chr14	23883310	23883310	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttttcctgtcctcctccGtctgggggccagagggtagg	15	11	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23883310	A	A	23883310	3	1	216	1	0	0	0	0	1	0	0	0	10133	1159	40	4	258	4	MYH7	14	23883310	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	4317122	23883310	83466230	81	167920											
KIAA0391	9692	broad.mit.edu	37	chr14	35593472	35593472	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttatatgtatgtttttattCtttaattttttttttttttg	3	1	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35593472	T	T	35593472	1	4	216	0	1	0	0	0	0	0	0	0	8242	928	32	4		4	KIAA0391	14	35593472	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	11710162	35593472	71756068	82	167921											
NID2	22795	broad.mit.edu	37	chr14	52527098	52527098	+	Intron	DEL	G	-	-													tgaggaaaaaaaaaaaaaaaGagagagagagagagagaaac					rs975026		TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52527098	-	-	52527098	6	5	216	0	1	1	0	1	0	0	0	0	10510	957	33	0		0	NID2	14	52527098	Intron	DEL	G	TCGA-75-5147-01A-01D-1625-08	16933626	52527098	54822442	83	167922											
SPTB	6710	broad.mit.edu	37	chr14	65236283	65236283	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacggagacggaggagctcGcctccatccttgcagtcccc	13	15	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65236283	A	A	65236283	1	1	216	0	1	0	0	0	0	0	0	0	15236	1102	38	4		4	SPTB	14	65236283	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	12709185	65236283	42113257	84	167923											
THBS1	7057	broad.mit.edu	37	chr15	39874029	39874029	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttgtgcttcctgctacaGgatccctgctgggcaccaac	9	15	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39874029	A	A	39874029	5	1	216	1	0	0	0	0	0	0	1	0	15976	1014	35	4		4	THBS1	15	39874029	Splice_Site	SNP	G	TCGA-75-5147-01A-01D-1625-08		39874029	62657363	85	167924											
SLC28A2	9153	broad.mit.edu	37	chr15	45555437	45555437	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccgcctgaggctttggacGaaatggtaagataagaatct	11	8	1	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45555437	A	A	45555437	2	1	216	1	0	0	0	0	0	0	0	1	14646	1045	37	4		4	SLC28A2	15	45555437	Silent	SNP	G	TCGA-75-5147-01A-01D-1625-08	5681408	45555437	56975955	86	167925											
STOML1	9399	broad.mit.edu	37	chr15	74281502	74281502	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatccaccctctgaaaggAgtcaatgaagggcaagagca	11	10	2	4			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74281502	C	C	74281502	3	2	216	1	0	0	0	0	1	0	0	0	15431	304	11	5	879	5	STOML1	15	74281502	Missense_Mutation	SNP	A	TCGA-75-5147-01A-01D-1625-08	28726065	74281502	28249890	87	167926											
C15orf27	123591	broad.mit.edu	37	chr15	76508973	76508973	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaagtaattaagcaactaGagccttcactgtgatatggt	8	6	1	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76508973	C	C	76508973	1	2	216	0	1	0	0	0	0	0	0	0	1801	957	33	4		4	C15orf27	15	76508973	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	2227471	76508973	26022419	88	167927											
BTBD12	84464	broad.mit.edu	37	chr16	3647557	3647557	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatcctgctggcaggaagTggtggcgtgctagacaattc	13	8	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3647557	C	C	3647557	2	2	216	1	0	0	0	0	0	0	0	1	1549	1683	59	5		5	BTBD12	16	3647557	Silent	SNP	T	TCGA-75-5147-01A-01D-1625-08		3647557	86707196	89	167928											
BTBD12	84464	broad.mit.edu	37	chr16	3652319	3652319	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcccatacactgtggagaaGcaccaaagatccgtgagaat	10	10	0	3			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3652319	C	C	3652319	1	2	216	0	1	0	0	0	0	0	0	0	1549	986	34	4		4	BTBD12	16	3652319	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	4762	3652319	86702434	90	167929											
ABCC12	94160	broad.mit.edu	37	chr16	48145406	48145406	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccttcatctttctcatttCctggagccaaaactagggtg	7	11	3	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48145406	T	T	48145406	3	4	216	1	0	0	0	0	1	0	0	0	52	855	30	4	1913	4	ABCC12	16	48145406	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	44493087	48145406	42209347	91	167930											
TAF1C	9013	broad.mit.edu	37	chr16	84213451	84213451	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaagggcgggacgacggcaGccagacctggtgacgggaat	18	10	0	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84213451	C	C	84213451	3	2	216	1	0	0	0	0	1	0	0	0	15640	971	34	4	907	4	TAF1C	16	84213451	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	36068045	84213451	6141302	92	167931											
DEF8	54849	broad.mit.edu	37	chr16	90028237	90028237	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggctgtgatccctgcaCgcgttgtacacaactgggac	11	13	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90028237	A	A	90028237	3	1	216	1	0	0	0	0	1	0	0	0	4420	536	19	3	1061	3	DEF8	16	90028237	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	5814786	90028237	326516	93	167932											
PRPF8	10594	broad.mit.edu	37	chr17	1580046	1580046	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcaagccaggatccagccaGgcactgtggcacacatctgt	10	13	2	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1580046	C	C	1580046	1	2	216	0	1	0	0	0	0	0	0	0	12681	1015	35	4		4	PRPF8	17	1580046	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08		1580046	79615164	94	167933											
ZBTB4	57659	broad.mit.edu	37	chr17	7369753	7369753	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaactccaggacccggGgtggggaagaagcaggggga	19	9	0	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7369753	A	A	7369753	3	1	216	1	0	0	0	0	1	0	0	0	17667	1232	43	4	2681	4	ZBTB4	17	7369753	Missense_Mutation	SNP	G	TCGA-75-5147-01A-01D-1625-08	5789707	7369753	73825457	95	167934											
TP53	7157	broad.mit.edu	37	chr17	7578442	7578442	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgtgctgtgactgcttgTagatggccatggcgcggacg	15	9	1	2	rs148924904		TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7578442	C	C	7578442	3	2	216	1	0	0	0	0	1	0	0	0	16505	1638	57	5	810	5	TP53	17	7578442	Missense_Mutation	SNP	T	TCGA-75-5147-01A-01D-1625-08	208689	7578442	73616768	96	167935											
RAI1	10743	broad.mit.edu	37	chr17	17701333	17701333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttgtttgctgcctctgcCaaaacccggccaacttcaag	8	15	2	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17701333	A	A	17701333	3	1	216	1	0	0	0	0	1	0	0	0	13115	595	21	2	5073	2	RAI1	17	17701333	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	10122891	17701333	63493877	97	167936											
UNK	85451	broad.mit.edu	37	chr17	73818612	73818612	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttgcctctggaagcttctCcccgggcacttcccccgctt	8	17	2	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73818612	G	G	73818612	3	3	216	1	0	0	0	0	1	0	0	0	17126	855	30	4	2178	4	UNK	17	73818612	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	56117279	73818612	7376598	98	167937											
CLUL1	27098	broad.mit.edu	37	chr18	625072	625072	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagatttcacagttcttgaGgcacctatttcagcttactt	6	10	3	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	625072	A	A	625072	1	1	216	0	1	0	0	0	0	0	0	0	3602	1015	35	4		4	CLUL1	18	625072	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08		625072	77452176	99	167938											
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10218236	10218236	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggctgggcccctcggggTcacacactttctgatcctga	12	13	2	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10218236	G	G	10218236	3	3	216	1	0	0	0	0	1	0	0	0	12385	1667	58	5	255	5	PPAN-P2RY11	19	10218236	Missense_Mutation	SNP	T	TCGA-75-5147-01A-01D-1625-08		10218236	48910747	100	167939											
TYK2	7297	broad.mit.edu	37	chr19	10478970	10478970	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaaaggtctccacccaCcttatgcggaaatatagcat	7	11	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10478970	A	A	10478970	5	1	216	1	0	0	0	0	0	0	1	0	16936	521	18	3	3333	3	TYK2	19	10478970	Splice_Site	SNP	C	TCGA-75-5147-01A-01D-1625-08	260734	10478970	48650013	101	167940											
RYR1	6261	broad.mit.edu	37	chr19	39066539	39066540	+	Intron	INS	-	TC	TC													aacatcttatactcacgcttINStctctctctctctctgcagg							TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	39066540	TC	TC	39066539	6	5	216	0	1	1	1	0	0	0	0	0	13879	1856	64	0		0	RYR1	19	39066539	Intron	INS	-	TCGA-75-5147-01A-01D-1625-08	28587569	39066539	20062444	102	167941											
PSG1	5669	broad.mit.edu	37	chr19	43348637	43348637	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagcttttgttctgattgctGaaacttcccattaattgtcc	7	9	1	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43348637	A	A	43348637	1	1	216	0	1	0	0	0	0	0	0	0	12759	1305	45	4		4	PSG1	19	43348637	3'UTR	SNP	G	TCGA-75-5147-01A-01D-1625-08	4282098	43348637	15780346	103	167942											
CST5	1473	broad.mit.edu	37	chr20	23858221	23858221	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcatgtggttcgaccgaacTtcacattgaagtagtagttc	10	8	1	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23858221	G	G	23858221	3	3	216	1	0	0	0	0	1	0	0	0	4009	1609	56	5	170	5	CST5	20	23858221	Missense_Mutation	SNP	T	TCGA-75-5147-01A-01D-1625-08		23858221	39167299	104	167943											
PIGT	51604	broad.mit.edu	37	chr20	44048294	44048294	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggtacatgtaaagcatGtggtcagtgtctggctcagg	14	6	3	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44048294	A	A	44048294	1	1	216	0	1	0	0	0	0	0	0	0	11994	1392	48	4		4	PIGT	20	44048294	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	20190073	44048294	18977226	105	167944											
ZNF217	7764	broad.mit.edu	37	chr20	52198741	52198741	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtaaggagaggagatgctctCggccgcgtgcacctggacga	16	10	1	2			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52198741	G	G	52198741	3	3	216	1	0	0	0	0	1	0	0	0	17898	893	31	4	2537	4	ZNF217	20	52198741	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08	8150447	52198741	10826779	106	167945											
LAMA5	3911	broad.mit.edu	37	chr20	60887890	60887890	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccctgcggcctgccccgCccccatcgttccatctcctc	7	22	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60887890	T	T	60887890	1	4	216	0	1	0	0	0	0	0	0	0	8681	754	26	4		4	LAMA5	20	60887890	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	8689149	60887890	2137630	107	167946											
GART	2618	broad.mit.edu	37	chr21	34897281	34897281	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcatggaacacctccaGtcctagagcttgagcctcag	10	14	1	2	rs139633075	byFrequency	TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34897281	A	A	34897281	2	1	216	1	0	0	0	0	0	0	0	1	6305	1020	36	4		4	GART	21	34897281	Silent	SNP	G	TCGA-75-5147-01A-01D-1625-08		34897281	13232614	108	167947											
UMODL1	89766	broad.mit.edu	37	chr21	43510599	43510599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatggcttaattcctgtttGccccgggaatactcaccagc	9	12	1	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43510599	T	T	43510599	1	4	216	0	1	0	0	0	0	0	0	0	17106	1334	46	3		3	UMODL1	21	43510599	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	8613318	43510599	4619296	109	167948											
EP300	2033	broad.mit.edu	37	chr22	41488932	41488932	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcccacccctgggtgcggCgcggggaccccgggccgaag	17	17	0	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41488932	T	T	41488932	1	4	216	0	1	0	0	0	0	0	0	0	5190	783	27	4		4	EP300	22	41488932	5'UTR	SNP	C	TCGA-75-5147-01A-01D-1625-08		41488932	9815634	110	167949											
DMD	1756	broad.mit.edu	37	chrX	32382729	32382729	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttctttttgctggggtttCtttttctctgattcatccaa	6	9	5	1			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32382729	G	G	32382729	3	3	216	1	0	0	0	0	1	0	0	0	4620	912	32	4	6257	4	DMD	23	32382729	Missense_Mutation	SNP	C	TCGA-75-5147-01A-01D-1625-08		32382729	122887831	111	167950											
STAG2	10735	broad.mit.edu	37	chrX	123184313	123184313	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctgtaaaaacttatttTctatcacataaagtctgcta	3	8	4	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123184313	C	C	123184313	1	2	216	0	1	0	0	0	0	0	0	0	15361	1798	62	5		5	STAG2	23	123184313	Intron	SNP	T	TCGA-75-5147-01A-01D-1625-08	90801584	123184313	32086247	112	167951											
FATE1	89885	broad.mit.edu	37	chrX	150890399	150890399	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggacagatgcagtggcGcagactagcctggaagagtt	15	9	0	3	rs139813476		TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150890399	T	T	150890399	2	4	216	1	0	0	0	0	0	0	0	1	5750	1074	38	3		3	FATE1	23	150890399	Silent	SNP	G	TCGA-75-5147-01A-01D-1625-08	27706086	150890399	4380161	113	167952											
L1CAM	3897	broad.mit.edu	37	chrX	153138163	153138163	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctccatcactgaagacagGgtggagagagcggtggtgag	18	7	1	4			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153138163	A	A	153138163	1	1	216	0	1	0	0	0	0	0	0	0	8660	1247	43	4		4	L1CAM	23	153138163	Intron	SNP	G	TCGA-75-5147-01A-01D-1625-08	2247764	153138163	2132397	114	167953											
PLXNA3	55558	broad.mit.edu	37	chrX	153698162	153698162	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggtggccatgtgcccttCgagggaacccccacttccaa	11	14	0	0			TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153698162	T	T	153698162	1	4	216	0	1	0	0	0	0	0	0	0	12216	899	31	4		4	PLXNA3	23	153698162	Intron	SNP	C	TCGA-75-5147-01A-01D-1625-08	559999	153698162	1572398	115	167954											
C1orf187	374946	broad.mit.edu	37	chr1	11772264	11772264	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaccctgagggaaaataccTgttaggtccaacagtgcctt	9	10	0	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11772264	A	A	11772264	1	1	217	0	1	0	0	0	0	0	0	0	2041	1595	55	5		5	C1orf187	1	11772264	Intron	SNP	T	TCGA-75-6203-01A-11D-1753-08		11772264	237478357	1	167955											
KCNH1	3756	broad.mit.edu	37	chr1	211092987	211092987	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgtcatacttacagccaAtcatcatgatggccactgca	6	13	3	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211092987	G	G	211092987	3	3	217	1	0	0	0	0	1	0	0	0	8101	101	4	5	1532	5	KCNH1	1	211092987	Missense_Mutation	SNP	A	TCGA-75-6203-01A-11D-1753-08	199320723	211092987	38157634	2	167956											
SIPA1L2	57568	broad.mit.edu	37	chr1	232626558	232626558	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaagatggatgggaaaactCcaaaactttcagaaacagac	9	7	1	3			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232626558	A	A	232626558	1	1	217	0	1	0	0	0	0	0	0	0	14443	870	30	3		3	SIPA1L2	1	232626558	Intron	SNP	C	TCGA-75-6203-01A-11D-1753-08	21533571	232626558	16624063	3	167957											
TTN	7273	broad.mit.edu	37	chr2	179600640	179600640	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgtgtttgttttctgcgtCggaaatcctccagttaggtg	11	7	1	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179600640	T	T	179600640	3	4	217	1	0	0	0	0	1	0	0	0	16861	884	31	4	90248	4	TTN	2	179600640	Missense_Mutation	SNP	C	TCGA-75-6203-01A-11D-1753-08		179600640	63598733	4	167958											
SP100	6672	broad.mit.edu	37	chr2	231363219	231363219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatttaactctgaataaCaaagtccaaaagaaaagatg	5	6	1	3			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231363219	A	A	231363219	3	1	217	1	0	0	0	0	1	0	0	0	15074	477	17	3	1763	3	SP100	2	231363219	Missense_Mutation	SNP	C	TCGA-75-6203-01A-11D-1753-08	51762579	231363219	11836154	5	167959											
ARPP21	10777	broad.mit.edu	37	chr3	35785377	35785377	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtaccctacctcaaccaCgcaacagtaccggcccatgg	7	17	2	0	rs139862817	byFrequency	TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35785377	T	T	35785377	3	4	217	1	0	0	0	0	1	0	0	0	982	536	19	4	2027	4	ARPP21	3	35785377	Missense_Mutation	SNP	C	TCGA-75-6203-01A-11D-1753-08		35785377	162237053	6	167960											
EPHA3	2042	broad.mit.edu	37	chr3	89456471	89456471	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgatcgccatttcagcGgcagtagcaattattctcct	8	11	3	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89456471	A	A	89456471	2	1	217	1	0	0	0	0	0	0	0	1	5210	1103	39	4		4	EPHA3	3	89456471	Silent	SNP	G	TCGA-75-6203-01A-11D-1753-08	53671094	89456471	108565959	7	167961											
UNC5C	8633	broad.mit.edu	37	chr4	96163597	96163597	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tactctgcatgcaaagcccaTcagtgcagttcttggattgc	9	11	3	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96163597	A	A	96163597	3	1	217	1	0	0	0	0	1	0	0	0	17119	1435	50	5	1744	5	UNC5C	4	96163597	Missense_Mutation	SNP	T	TCGA-75-6203-01A-11D-1753-08		96163597	94990679	8	167962											
SRP19	6728	broad.mit.edu	37	chr5	112203238	112203238	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaaaagaagtaacctAgtatcagcatcaagtatgtg	9	5	2	2			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112203238	C	C	112203238	1	2	217	0	1	0	0	0	0	0	0	0	15272	435	15	5		5	SRP19	5	112203238	3'UTR	SNP	A	TCGA-75-6203-01A-11D-1753-08		112203238	68712022	9	167963											
KCNN2	3781	broad.mit.edu	37	chr5	113699634	113699634	+	Frame_Shift_Del	DEL	T	-	-													ttccttagctctgaaatgccTtatcagtctctccacgatca							TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113699634	-	-	113699634	7	5	217	1	0	1	0	1	0	0	0	0	8149	1609	56	0	524	0	KCNN2	5	113699634	Frame_Shift_Del	DEL	T	TCGA-75-6203-01A-11D-1753-08	1496396	113699634	67215626	10	167964											
DHX16	8449	broad.mit.edu	37	chr6	30624774	30624774	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gattccatgcctgtgcggggGttgtagctcttctgcttaca	12	10	2	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30624774	T	T	30624774	3	4	217	1	0	0	0	0	1	0	0	0	4542	1252	44	3	1054	3	DHX16	6	30624774	Missense_Mutation	SNP	G	TCGA-75-6203-01A-11D-1753-08		30624774	140490293	11	167965											
SLC35F1	222553	broad.mit.edu	37	chr6	118320457	118320457	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccccaagcttgggaagcGtgctcttgcccgtattgcca	10	15	1	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118320457	A	A	118320457	1	1	217	0	1	0	0	0	0	0	0	0	14702	1160	40	4		4	SLC35F1	6	118320457	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08	87695683	118320457	52794610	12	167966											
AGR2	10551	broad.mit.edu	37	chr7	16832472	16832474	+	3'UTR	DEL	CTT	-	-													cactagccagtcttctcacaCttcttctggtttcaagtctc							TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16832474	-	-	16832472	6	5	217	0	1	1	0	1	0	0	0	0	395	580	20	0		0	AGR2	7	16832472	3'UTR	DEL	CTT	TCGA-75-6203-01A-11D-1753-08		16832472	142306191	13	167967											
NPC1L1	29881	broad.mit.edu	37	chr7	44579720	44579720	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgataccagctgcttggcGgagcagcaggcttgggtgtt	16	8	0	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44579720	A	A	44579720	2	1	217	1	0	0	0	0	0	0	0	1	10666	1103	39	4		4	NPC1L1	7	44579720	Silent	SNP	G	TCGA-75-6203-01A-11D-1753-08	27747248	44579720	114558943	14	167968											
UBN2	254048	broad.mit.edu	37	chr7	138921720	138921720	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtaatactaatggatactTctctttcttttcccattcac	3	10	3	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138921720	A	A	138921720	1	1	217	0	1	0	0	0	0	0	0	0	17019	1798	62	5		5	UBN2	7	138921720	Intron	SNP	T	TCGA-75-6203-01A-11D-1753-08	94342000	138921720	20216943	15	167969											
ARHGEF5	7984	broad.mit.edu	37	chr7	144068195	144068195	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacattacacagtggctgGcatattccagggggtaaata	10	7	0	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144068195	A	A	144068195	1	1	217	0	1	0	0	0	0	0	0	0	911	1218	42	4		4	ARHGEF5	7	144068195	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08	5146475	144068195	15070468	16	167970											
KIAA0146	23514	broad.mit.edu	37	chr8	48308833	48308833	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaaaaggtccttcaagaGctgtaactgtaagggaatgg	11	6	2	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48308833	A	A	48308833	1	1	217	0	1	0	0	0	0	0	0	0	8227	986	34	4		4	KIAA0146	8	48308833	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08		48308833	98055189	17	167971											
PCSK5	5125	broad.mit.edu	37	chr9	78601190	78601190	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctaaggaagcctggcctagGgccatgtcatccggttttgt	13	10	1	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78601190	A	A	78601190	1	1	217	0	1	0	0	0	0	0	0	0	11697	1247	43	4		4	PCSK5	9	78601190	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08		78601190	62612241	18	167972											
C9orf21	195827	broad.mit.edu	37	chr9	99408070	99408070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttggcgacagagcgagaCtccctctcgaaaaaaaaaaa	9	11	1	2			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99408070	A	A	99408070	1	1	217	0	1	0	0	0	0	0	0	0	2499	580	20	3		3	C9orf21	9	99408070	Intron	SNP	C	TCGA-75-6203-01A-11D-1753-08	20806880	99408070	41805361	19	167973											
KIAA0913	23053	broad.mit.edu	37	chr10	75550013	75550013	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacaacatcaaaaagacaCtgcacaagttctgtggcccc	7	13	2	2			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75550013	T	T	75550013	2	4	217	1	0	0	0	0	0	0	0	1	8270	564	20	4		4	KIAA0913	10	75550013	Silent	SNP	C	TCGA-75-6203-01A-11D-1753-08		75550013	59984734	20	167974											
OR5I1	10798	broad.mit.edu	37	chr11	55703528	55703528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcataggccatggcggccaGgatgaaggattctgtatctg	13	8	3	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55703528	T	T	55703528	3	4	217	1	0	0	0	0	1	0	0	0	11258	991	35	2	598	2	OR5I1	11	55703528	Missense_Mutation	SNP	G	TCGA-75-6203-01A-11D-1753-08		55703528	79302988	21	167975											
FAT3	120114	broad.mit.edu	37	chr11	92616397	92616397	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgtggacgggctgggaggcGagcaccaggaaatgaccacg	17	10	0	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92616397	A	A	92616397	3	1	217	1	0	0	0	0	1	0	0	0	5748	1059	37	4	12865	4	FAT3	11	92616397	Missense_Mutation	SNP	G	TCGA-75-6203-01A-11D-1753-08	36912869	92616397	42390119	22	167976											
VWF	7450	broad.mit.edu	37	chr12	6076579	6076579	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttatttatttaaagaccGcagtgaggtcccactgcctg	9	9	0	2			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6076579	A	A	6076579	1	1	217	0	1	0	0	0	0	0	0	0	17373	1102	38	4		4	VWF	12	6076579	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08		6076579	127775316	23	167977											
CRY1	1407	broad.mit.edu	37	chr12	107391864	107391864	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagaagtaacagtaacCaattagtttgcacacacata	5	10	1	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107391864	A	A	107391864	1	1	217	0	1	0	0	0	0	0	0	0	3935	609	21	2		2	CRY1	12	107391864	Intron	SNP	C	TCGA-75-6203-01A-11D-1753-08	101315285	107391864	26460031	24	167978											
WDR66	144406	broad.mit.edu	37	chr12	122361944	122361944	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcttttgagagtgttgCgcaataggggaattttatgc	13	5	0	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122361944	T	T	122361944	1	4	217	0	1	0	0	0	0	0	0	0	17444	783	27	4		4	WDR66	12	122361944	Intron	SNP	C	TCGA-75-6203-01A-11D-1753-08	14970080	122361944	11489951	25	167979											
METT11D1	64745	broad.mit.edu	37	chr14	21464765	21464765	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggctcatcgctggccccGtatcactcagcctgtcctta	10	15	3	0	rs144273829		TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21464765	A	A	21464765	3	1	217	1	0	0	0	0	1	0	0	0	9584	1145	40	4	1210	4	METT11D1	14	21464765	Missense_Mutation	SNP	G	TCGA-75-6203-01A-11D-1753-08		21464765	85884775	26	167980											
AHNAK2	113146	broad.mit.edu	37	chr14	105413949	105413949	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggacgtccacctccatGctggacagagacatctccac	9	16	1	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105413949	A	A	105413949	2	1	217	1	0	0	0	0	0	0	0	1	415	1310	46	4		4	AHNAK2	14	105413949	Silent	SNP	G	TCGA-75-6203-01A-11D-1753-08	83949184	105413949	1935591	27	167981											
RYR3	6263	broad.mit.edu	37	chr15	33765678	33765678	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaggagcagaggaagttctGcctggcagccgagggacttg	16	8	1	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33765678	A	A	33765678	3	1	217	1	0	0	0	0	1	0	0	0	13881	1319	46	4	116	4	RYR3	15	33765678	Missense_Mutation	SNP	G	TCGA-75-6203-01A-11D-1753-08		33765678	68765714	28	167982											
PLA2G10	8399	broad.mit.edu	37	chr16	14766485	14766485	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtcacacttgggcgagtcCggctcacataggaactgggg	14	11	2	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14766485	T	T	14766485	2	4	217	1	0	0	0	0	0	0	0	1	12084	639	23	4		4	PLA2G10	16	14766485	Silent	SNP	C	TCGA-75-6203-01A-11D-1753-08		14766485	75588268	29	167983											
LCMT1	51451	broad.mit.edu	37	chr16	25175976	25175976	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatgactccagagcagtcCgcaaacctcctgaagtgggc	10	13	0	3			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25175976	T	T	25175976	2	4	217	1	0	0	0	0	0	0	0	1	8750	639	23	4		4	LCMT1	16	25175976	Silent	SNP	C	TCGA-75-6203-01A-11D-1753-08	10409491	25175976	65178777	30	167984											
ZNF23	7571	broad.mit.edu	37	chr16	71482751	71482751	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttccacattcagtgcattCatagggtttctcacctgtgt	7	10	3	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71482751	A	A	71482751	4	1	217	1	0	0	0	0	0	1	0	0	17909	835	29	3	758	3	ZNF23	16	71482751	Nonsense_Mutation	SNP	C	TCGA-75-6203-01A-11D-1753-08	46306775	71482751	18872002	31	167985											
RCVRN	5957	broad.mit.edu	37	chr17	9804298	9804298	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaaggcaatgaaggaaaagGaattcaccatcatcattctt	7	8	4	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9804298	T	T	9804298	1	4	217	0	1	0	0	0	0	0	0	0	13294	1189	41	3		3	RCVRN	17	9804298	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08		9804298	71390912	32	167986											
DHX40	79665	broad.mit.edu	37	chr17	57679847	57679847	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agattatttcaaattgtactAtgagatttaccactctctac	4	8	2	2			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57679847	T	T	57679847	1	4	217	0	1	0	0	0	0	0	0	0	4552	464	16	5		5	DHX40	17	57679847	Intron	SNP	A	TCGA-75-6203-01A-11D-1753-08	47875549	57679847	23515363	33	167987											
CYP2A6	1548	broad.mit.edu	37	chr19	41356098	41356098	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccccctgccacaaagcccCagccaactaggcagccccca	6	21	0	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41356098	T	T	41356098	1	4	217	0	1	0	0	0	0	0	0	0	4195	609	21	4		4	CYP2A6	19	41356098	Intron	SNP	C	TCGA-75-6203-01A-11D-1753-08		41356098	17772885	34	167988											
LRRN4	164312	broad.mit.edu	37	chr20	6022727	6022727	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgcgctgggcgcgacGgtggtaccctgtgcgtaggt	20	10	0	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6022727	A	A	6022727	2	1	217	1	0	0	0	0	0	0	0	1	9124	1103	39	4		4	LRRN4	20	6022727	Silent	SNP	G	TCGA-75-6203-01A-11D-1753-08		6022727	57002793	35	167989											
PAK7	57144	broad.mit.edu	37	chr20	9546621	9546621	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccctgtgtgtttctcGgtggcgatgcatacgatgcc	12	10	1	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9546621	A	A	9546621	2	1	217	1	0	0	0	0	0	0	0	1	11499	1103	39	4		4	PAK7	20	9546621	Silent	SNP	G	TCGA-75-6203-01A-11D-1753-08	3523894	9546621	53478899	36	167990											
FAM83C	128876	broad.mit.edu	37	chr20	33874948	33874948	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctggcttggggacaacCtcctgtcctctggggcctgc	14	15	1	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33874948	A	A	33874948	3	1	217	1	0	0	0	0	1	0	0	0	5688	681	24	2	613	2	FAM83C	20	33874948	Missense_Mutation	SNP	C	TCGA-75-6203-01A-11D-1753-08	24328327	33874948	29150572	37	167991											
CDH4	1002	broad.mit.edu	37	chr20	60428000	60428000	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccctgtgggctctgcGggtgcagcacaggccctgag	17	12	1	2			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60428000	A	A	60428000	1	1	217	0	1	0	0	0	0	0	0	0	3142	1131	39	4		4	CDH4	20	60428000	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08	26553052	60428000	2597520	38	167992											
MAGEB10	139422	broad.mit.edu	37	chrX	27839380	27839380	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctcttctccaggtcacGggatcacctgcctttttggc	8	14	5	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27839380	A	A	27839380	1	1	217	0	1	0	0	0	0	0	0	0	9265	1131	39	4		4	MAGEB10	23	27839380	5'UTR	SNP	G	TCGA-75-6203-01A-11D-1753-08		27839380	127431180	39	167993											
PCDH11X	27328	broad.mit.edu	37	chrX	91368771	91368771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacaagaatccgaatgggGtccctcatgaacttcttgat	9	9	2	4			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91368771	T	T	91368771	1	4	217	0	1	0	0	0	0	0	0	0	11602	1276	44	3		3	PCDH11X	23	91368771	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08	63529391	91368771	63901789	40	167994											
TRPC5	7224	broad.mit.edu	37	chrX	111095482	111095482	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcaaaagcttaatgtaGccaaaatcgctgtgtaggaa	10	7	0	0			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111095482	T	T	111095482	1	4	217	0	1	0	0	0	0	0	0	0	16707	986	34	3		3	TRPC5	23	111095482	Intron	SNP	G	TCGA-75-6203-01A-11D-1753-08	19726711	111095482	44175078	41	167995											
SAGE1	55511	broad.mit.edu	37	chrX	134994685	134994685	+	Intron	DEL	T	-	-													tccctggccctcaatcatagTtcatgctatttccacaggca							TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134994685	-	-	134994685	6	5	217	0	1	1	0	1	0	0	0	0	13920	1740	60	0		0	SAGE1	23	134994685	Intron	DEL	T	TCGA-75-6203-01A-11D-1753-08	23899203	134994685	20275875	42	167996											
ATP11C	286410	broad.mit.edu	37	chrX	138886595	138886595	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatgattaactatcctgAgatcaaaatgtttaggcaag	8	5	1	2			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138886595	T	T	138886595	1	4	217	0	1	0	0	0	0	0	0	0	1125	319	11	5		5	ATP11C	23	138886595	Intron	SNP	A	TCGA-75-6203-01A-11D-1753-08	3891910	138886595	16383965	43	167997											
AFF2	2334	broad.mit.edu	37	chrX	148055159	148055159	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatagcctttctgcaatcAtcttcctacactcatttcag	4	12	5	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148055159	T	T	148055159	1	4	217	0	1	0	0	0	0	0	0	0	357	232	8	5		5	AFF2	23	148055159	Intron	SNP	A	TCGA-75-6203-01A-11D-1753-08	9168564	148055159	7215401	44	167998											
HCFC1	3054	broad.mit.edu	37	chrX	153228790	153228790	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacggcagtatgtgactcccGgggtggtggtaggaccccgt	16	11	0	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153228790	A	A	153228790	3	1	217	1	0	0	0	0	1	0	0	0	7057	1115	39	4	5601	4	HCFC1	23	153228790	Missense_Mutation	SNP	G	TCGA-75-6203-01A-11D-1753-08	5173631	153228790	2041770	45	167999											
PLXNA3	55558	broad.mit.edu	37	chrX	153697419	153697419	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccttcactgcgtgtgtccGgagaacgagggcagcgccca	13	14	1	1			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153697419	T	T	153697419	2	4	217	1	0	0	0	0	0	0	0	1	12216	1103	39	1		1	PLXNA3	23	153697419	Silent	SNP	G	TCGA-75-6203-01A-11D-1753-08	468629	153697419	1573141	46	168000											
F8	2157	broad.mit.edu	37	chrX	154088755	154088755	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccactgatggccatcttgActgctggagatgaggaactc	12	10	1	4			TCGA-75-6203-01A-11D-1753-08	TCGA-75-6203-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154088755	T	T	154088755	3	4	217	1	0	0	0	0	1	0	0	0	5393	272	10	5	211	5	F8	23	154088755	Missense_Mutation	SNP	A	TCGA-75-6203-01A-11D-1753-08	391336	154088755	1181805	47	168001											
AKR7A3	22977	broad.mit.edu	37	chr1	19612964	19612964	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggcaaatcagaaggtcAggagttcaagaccagctgga	14	8	3	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19612964	G	G	19612964	1	3	218	0	1	0	0	0	0	0	0	0	476	203	7	5		5	AKR7A3	1	19612964	Intron	SNP	A	TCGA-75-6205-01A-11D-1753-08		19612964	229637657	1	168002											
EIF4G3	8672	broad.mit.edu	37	chr1	21188703	21188703	+	Intron	DEL	A	-	-													ggaccagcaggcttattattAttttttttcccactcaccag					rs10916885	by1000genomes	TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21188703	-	-	21188703	6	5	218	0	1	1	0	1	0	0	0	0	5080	464	16	0		0	EIF4G3	1	21188703	Intron	DEL	A	TCGA-75-6205-01A-11D-1753-08	1575739	21188703	228061918	2	168003											
HSPG2	3339	broad.mit.edu	37	chr1	22222812	22222812	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccatgggtcacctgtaagcAaacgagagctgattgagtca	11	10	2	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22222812	G	G	22222812	1	3	218	0	1	0	0	0	0	0	0	0	7500	145	5	5		5	HSPG2	1	22222812	Intron	SNP	A	TCGA-75-6205-01A-11D-1753-08	1034109	22222812	227027809	3	168004											
ZMYM6	9204	broad.mit.edu	37	chr1	35476084	35476084	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttatcaacccctgagaatcGcacagtctcctttataattt	4	12	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35476084	A	A	35476084	4	1	218	1	0	0	0	0	0	1	0	0	17830	1095	38	4	2549	4	ZMYM6	1	35476084	Nonsense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	13253272	35476084	213774537	4	168005											
RLF	6018	broad.mit.edu	37	chr1	40703541	40703541	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctaaaaggccctgtaCagaggataccatgttggaac	10	9	1	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40703541	G	G	40703541	3	3	218	1	0	0	0	0	1	0	0	0	13500	478	17	4	3197	4	RLF	1	40703541	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	5227457	40703541	208547080	5	168006											
XPR1	9213	broad.mit.edu	37	chr1	180651582	180651582	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttaagtttagtcacagaAaacctctttttaaggaaaga	6	8	2	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180651582	G	G	180651582	1	3	218	0	1	0	0	0	0	0	0	0	17578	29	1	5		5	XPR1	1	180651582	Intron	SNP	A	TCGA-75-6205-01A-11D-1753-08	139948041	180651582	68599039	6	168007											
TNNT2	7139	broad.mit.edu	37	chr1	201333427	201333427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggctaggggtcactcacaGccaggcggttctgccgctcc	14	14	3	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201333427	C	C	201333427	3	2	218	1	0	0	0	0	1	0	0	0	16454	985	34	4	439	4	TNNT2	1	201333427	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	20681845	201333427	47917194	7	168008											
ZNF678	339500	broad.mit.edu	37	chr1	227843479	227843479	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatagtaagtataagagaAtttatactggagaggaacct	9	5	0	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	227843479	C	C	227843479	3	2	218	1	0	0	0	0	1	0	0	0	18212	101	4	5	1707	5	ZNF678	1	227843479	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	26510052	227843479	21407142	8	168009											
JMJD4	65094	broad.mit.edu	37	chr1	227920075	227920075	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctctcttccacccgtccttCtatcctcacgacaggtgcta	5	18	3	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	227920075	G	G	227920075	1	3	218	0	1	0	0	0	0	0	0	0	8021	928	32	4		4	JMJD4	1	227920075	3'UTR	SNP	C	TCGA-75-6205-01A-11D-1753-08	76596	227920075	21330546	9	168010											
SNTG2	54221	broad.mit.edu	37	chr2	1263181	1263181	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcgagcagaaaggacctatCacctctgtgaggtgctattt	11	9	2	2	rs145354756	by1000genomes	TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1263181	T	T	1263181	3	4	218	1	0	0	0	0	1	0	0	0	14989	826	29	4	1095	4	SNTG2	2	1263181	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08		1263181	241936192	10	168011											
NRBP1	29959	broad.mit.edu	37	chr2	27656125	27656125	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccccaaccagtgcaggcctGagtgttccttccagcatgtc	10	15	0	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27656125	T	T	27656125	1	4	218	0	1	0	0	0	0	0	0	0	10737	1305	45	3		3	NRBP1	2	27656125	5'UTR	SNP	G	TCGA-75-6205-01A-11D-1753-08	26392944	27656125	215543248	11	168012											
NLRC4	58484	broad.mit.edu	37	chr2	32475459	32475459	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgacccacaggtgtaccGgagcaggctgctataagtgg	14	9	0	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32475459	A	A	32475459	3	1	218	1	0	0	0	0	1	0	0	0	10564	1115	39	4	1624	4	NLRC4	2	32475459	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	4819334	32475459	210723914	12	168013											
CEBPZ	10153	broad.mit.edu	37	chr2	37430153	37430153	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttttcttttttcttggcccTaaaaaaaattgtaagtctac	4	8	3	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37430153	A	A	37430153	5	1	218	1	0	0	0	0	0	0	1	0	3234	1536	53	5	293	5	CEBPZ	2	37430153	Splice_Site	SNP	T	TCGA-75-6205-01A-11D-1753-08	4954694	37430153	205769220	13	168014											
GTF3C3	9330	broad.mit.edu	37	chr2	197634784	197634784	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaaataagcagtggtgTcagacggtgtgacaagaaca	13	6	1	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197634784	A	A	197634784	1	1	218	0	1	0	0	0	0	0	0	0	6939	1682	58	5		5	GTF3C3	2	197634784	Intron	SNP	T	TCGA-75-6205-01A-11D-1753-08	160204631	197634784	45564589	14	168015											
STK36	27148	broad.mit.edu	37	chr2	219563892	219563892	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatcctcaggctggtatcCggcgcaatgttgcatcagct	12	11	2	1	rs142956585		TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219563892	T	T	219563892	3	4	218	1	0	0	0	0	1	0	0	0	15420	643	23	4	3723	4	STK36	2	219563892	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	21929108	219563892	23635481	15	168016											
IQCB1	9657	broad.mit.edu	37	chr3	121544968	121544968	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattttctgcagctgatggaAgtaattcattgtaaaattcc	7	6	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121544968	C	C	121544968	3	2	218	1	0	0	0	0	1	0	0	0	7873	72	3	5	1517	5	IQCB1	3	121544968	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08		121544968	76477462	16	168017											
THAP6	152815	broad.mit.edu	37	chr4	76442122	76442122	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagacagattttgacagaaGtgctccaaatattaaactga	8	6	0	5			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76442122	C	C	76442122	3	2	218	1	0	0	0	0	1	0	0	0	15971	1029	36	4	227	4	THAP6	4	76442122	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08		76442122	114712154	17	168018											
ELF2	1998	broad.mit.edu	37	chr4	140058862	140058862	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actgctgatgtcattgttatTccctgaggaagcttcaaacg	9	9	2	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140058862	A	A	140058862	1	1	218	0	1	0	0	0	0	0	0	0	5096	1798	62	5		5	ELF2	4	140058862	5'UTR	SNP	T	TCGA-75-6205-01A-11D-1753-08	63616740	140058862	51095414	18	168019											
TARS	6897	broad.mit.edu	37	chr5	33441173	33441173	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgtcgctttcgggttctctCatcgcttcgtcgttcgccaa	9	15	2	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33441173	T	T	33441173	1	4	218	0	1	0	0	0	0	0	0	0	15678	841	29	4		4	TARS	5	33441173	5'UTR	SNP	C	TCGA-75-6205-01A-11D-1753-08		33441173	147474087	19	168020											
CDC20B	166979	broad.mit.edu	37	chr5	54410168	54410168	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggaagaaggaaagacaGttcatactcctccacgttac	11	9	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54410168	T	T	54410168	1	4	218	0	1	0	0	0	0	0	0	0	3090	1044	36	3		3	CDC20B	5	54410168	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	20968995	54410168	126505092	20	168021											
ADAMTS6	11174	broad.mit.edu	37	chr5	64748738	64748738	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccaaggtttgccacttctTgtgaaatctacaataaaagc	6	10	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64748738	G	G	64748738	2	3	218	1	0	0	0	0	0	0	0	1	270	1799	63	5		5	ADAMTS6	5	64748738	Silent	SNP	T	TCGA-75-6205-01A-11D-1753-08	10338570	64748738	116166522	21	168022											
MAST4	375449	broad.mit.edu	37	chr5	66400349	66400349	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatcccaccagggcctcatCacctcacgatacttccttga	5	16	3	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66400349	T	T	66400349	2	4	218	1	0	0	0	0	0	0	0	1	9419	816	29	4		4	MAST4	5	66400349	Silent	SNP	C	TCGA-75-6205-01A-11D-1753-08	1651611	66400349	114514911	22	168023											
MAP1B	4131	broad.mit.edu	37	chr5	71493315	71493315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgaaagggcttcagtaaGccccatggatgagcccgtgc	13	10	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71493315	T	T	71493315	3	4	218	1	0	0	0	0	1	0	0	0	9320	971	34	3	4151	3	MAP1B	5	71493315	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	5092966	71493315	109421945	23	168024											
RIOK2	55781	broad.mit.edu	37	chr5	96503577	96503577	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaatgagaattcagatcCctcttttgtttcaatatttt	5	6	3	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96503577	T	T	96503577	3	4	218	1	0	0	0	0	1	0	0	0	13489	632	22	4	707	4	RIOK2	5	96503577	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	25010262	96503577	84411683	24	168025											
RELL2	285613	broad.mit.edu	37	chr5	141018407	141018407	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagtagagaggattgttcGctgcatcatccagaatgaag	11	8	1	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	141018407	C	C	141018407	3	2	218	1	0	0	0	0	1	0	0	0	13327	1087	38	4	236	4	RELL2	5	141018407	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	44514830	141018407	39896853	25	168026											
TRAM2	9697	broad.mit.edu	37	chr6	52400668	52400668	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taaaacaaaggaaaagagttCcagtttagcttttggccaca	8	7	0	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52400668	A	A	52400668	1	1	218	0	1	0	0	0	0	0	0	0	16577	870	30	3		3	TRAM2	6	52400668	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08		52400668	118714399	26	168027											
FILIP1	27145	broad.mit.edu	37	chr6	76023514	76023514	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatctcctctagttgttgAgagaggaagttagccttatc	10	7	2	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76023514	G	G	76023514	2	3	218	1	0	0	0	0	0	0	0	1	5951	291	11	5		5	FILIP1	6	76023514	Silent	SNP	A	TCGA-75-6205-01A-11D-1753-08	23622846	76023514	95091553	27	168028											
FGFR1OP	11116	broad.mit.edu	37	chr6	167417806	167417806	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatttaggtataattgaaGcagaaggtactgtgggtgga	15	2	0	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167417806	A	A	167417806	3	1	218	1	0	0	0	0	1	0	0	0	5921	971	34	4	373	4	FGFR1OP	6	167417806	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	91394292	167417806	3697261	28	168029											
MLLT4	4301	broad.mit.edu	37	chr6	168299086	168299086	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaccccagtcaggatcatGctcttgcaaaaagatctgtg	10	10	4	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168299086	A	A	168299086	3	1	218	1	0	0	0	0	1	0	0	0	9722	1319	46	4	1561	4	MLLT4	6	168299086	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	881280	168299086	2815981	29	168030											
GLI3	2737	broad.mit.edu	37	chr7	42007114	42007114	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactggtggagaaactagcAaacataaaactgagggcctg	13	7	0	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42007114	C	C	42007114	1	2	218	0	1	0	0	0	0	0	0	0	6503	145	5	5		5	GLI3	7	42007114	Intron	SNP	A	TCGA-75-6205-01A-11D-1753-08		42007114	117131549	30	168031											
SEMA3A	10371	broad.mit.edu	37	chr7	83764344	83764344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgttggtacatggtaacCtgactatattgactgctgta	10	7	0	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83764344	A	A	83764344	1	1	218	0	1	0	0	0	0	0	0	0	14137	696	24	2		2	SEMA3A	7	83764344	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08	41757230	83764344	75374319	31	168032											
KRIT1	889	broad.mit.edu	37	chr7	91870326	91870326	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctctgataccctggtttgcAggagaaattggtttggtggt	13	7	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91870326	T	T	91870326	2	4	218	1	0	0	0	0	0	0	0	1	8516	175	7	5		5	KRIT1	7	91870326	Silent	SNP	A	TCGA-75-6205-01A-11D-1753-08	8105982	91870326	67268337	32	168033											
GIGYF1	64599	broad.mit.edu	37	chr7	100284038	100284038	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccatgttcccgccagccaGcagagcggggaccaccatct	10	18	1	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100284038	C	C	100284038	3	2	218	1	0	0	0	0	1	0	0	0	6441	971	34	4	2462	4	GIGYF1	7	100284038	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	8413712	100284038	58854625	33	168034											
MET	4233	broad.mit.edu	37	chr7	116412024	116412024	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaatgaatctgtagactaCcgagctacttttccagaagg	8	9	2	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116412024	G	G	116412024	4	3	218	1	0	0	0	0	0	1	0	0	9578	518	18	4	3113	4	MET	7	116412024	Nonsense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	16127986	116412024	42726639	34	168035											
FAM86B2	653333	broad.mit.edu	37	chr8	12287812	12287812	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttcactttgtctgtgcaGgaagggtatctgggctgtga	14	6	3	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12287812	A	A	12287812	1	1	218	0	1	0	0	0	0	0	0	0	5698	1015	35	4		4	FAM86B2	8	12287812	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08		12287812	134076210	35	168036											
NCALD	83988	broad.mit.edu	37	chr8	102705138	102705138	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agattgcctggggacagaagCgacatggtggtaagacagaa	15	6	0	4			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102705138	T	T	102705138	1	4	218	0	1	0	0	0	0	0	0	0	10296	783	27	4		4	NCALD	8	102705138	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08	90417326	102705138	43658884	36	168037											
ADCY8	114	broad.mit.edu	37	chr8	132052081	132052081	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atagcgctggtagaggcgttCcaaatcccgagatttgaagg	13	8	0	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132052081	G	G	132052081	3	3	218	1	0	0	0	0	1	0	0	0	300	864	30	4	3328	4	ADCY8	8	132052081	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	29346943	132052081	14311941	37	168038											
ZNF623	9831	broad.mit.edu	37	chr8	144733396	144733396	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgcttctgcaccagattAttcacactggagaaaagccc	8	12	2	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144733396	T	T	144733396	3	4	218	1	0	0	0	0	1	0	0	0	18174	449	16	5	1356	5	ZNF623	8	144733396	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	12681315	144733396	1630626	38	168039											
DCAF12	25853	broad.mit.edu	37	chr9	34093435	34093435	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacggcaatatggcagtttGgtggagaggagctgaaaata	14	5	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34093435	T	T	34093435	2	4	218	1	0	0	0	0	0	0	0	1	4296	1335	47	2		2	DCAF12	9	34093435	Silent	SNP	G	TCGA-75-6205-01A-11D-1753-08		34093435	107119996	39	168040											
TESK1	7016	broad.mit.edu	37	chr9	35608495	35608495	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcaccaggaccgccctgaCacacaatcagggtaagggag	11	13	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35608495	T	T	35608495	3	4	218	1	0	0	0	0	1	0	0	0	15889	478	17	4	1023	4	TESK1	9	35608495	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	1515060	35608495	105604936	40	168041											
FOXB2	442425	broad.mit.edu	37	chr9	79634826	79634826	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accagcctggcaagggtagcTtctgggcgctgcaccccgac	13	15	1	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79634826	C	C	79634826	3	2	218	1	0	0	0	0	1	0	0	0	6051	1609	56	5	258	5	FOXB2	9	79634826	Missense_Mutation	SNP	T	TCGA-75-6205-01A-11D-1753-08	44026331	79634826	61578605	41	168042											
YME1L1	10730	broad.mit.edu	37	chr10	27420896	27420896	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaagaaaagaaatgtttaTatttgatagattaataacat	8	1	0	4			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27420896	C	C	27420896	1	2	218	0	1	0	0	0	0	0	0	0	17614	1421	49	5		5	YME1L1	10	27420896	Intron	SNP	T	TCGA-75-6205-01A-11D-1753-08		27420896	108113851	42	168043											
ZNF33A	7581	broad.mit.edu	37	chr10	38345409	38345409	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggatattagaaatttccAgccacaagtcagcctccata	6	10	1	1	rs71491230	byFrequency	TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38345409	G	G	38345409	3	3	218	1	0	0	0	0	1	0	0	0	17980	188	7	5	2371	5	ZNF33A	10	38345409	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	10924513	38345409	97189338	43	168044											
SFTPA2	729238	broad.mit.edu	37	chr10	81319085	81319085	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacctggagggccagggtctCctttgacaccatctctcccg	10	15	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81319085	T	T	81319085	3	4	218	1	0	0	0	0	1	0	0	0	14303	855	30	4	607	4	SFTPA2	10	81319085	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	42973676	81319085	54215662	44	168045											
PSTK	118672	broad.mit.edu	37	chr10	124742438	124742438	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggcccagtcttgctacCtcttaacaaaaactgctgtt	7	11	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124742438	G	G	124742438	3	3	218	1	0	0	0	0	1	0	0	0	12826	681	24	4	412	4	PSTK	10	124742438	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	43423353	124742438	10792309	45	168046											
OR51B5	282763	broad.mit.edu	37	chr11	5363849	5363849	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgggtagtaaaaaggtgAagaatggcattctgaatctg	12	4	2	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5363849	G	G	5363849	2	3	218	1	0	0	0	0	0	0	0	1	11185	233	9	5		5	OR51B5	11	5363849	Silent	SNP	A	TCGA-75-6205-01A-11D-1753-08		5363849	129642667	46	168047											
GAS2	2620	broad.mit.edu	37	chr11	22696306	22696306	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaactgtcatcagaaaaccCgcggatccagttcattataa	7	10	3	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22696306	G	G	22696306	1	3	218	0	1	0	0	0	0	0	0	0	6307	667	23	4		4	GAS2	11	22696306	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08	17332457	22696306	112310210	47	168048											
KIAA0652	9776	broad.mit.edu	37	chr11	46686502	46686502	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcttaaatgctacacaccCtcaccaggtatctttaaaga	6	11	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46686502	T	T	46686502	3	4	218	1	0	0	0	0	1	0	0	0	8258	681	24	4	931	4	KIAA0652	11	46686502	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	23990196	46686502	88320014	48	168049											
ZBTB3	79842	broad.mit.edu	37	chr11	62519814	62519814	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctcacgtgtgtgcaccgtGgcatgtcgccgtagtgtgta	14	11	1	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62519814	A	A	62519814	2	1	218	1	0	0	0	0	0	0	0	1	17660	1335	47	4		4	ZBTB3	11	62519814	Silent	SNP	G	TCGA-75-6205-01A-11D-1753-08	15833312	62519814	72486702	49	168050											
MMP8	4317	broad.mit.edu	37	chr11	102586187	102586188	+	Intron	DEL	AC	-	-													acctaacggaacataaggaaAcacacacacacacttataca							TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	102586188	-	-	102586187	6	5	218	0	1	1	0	1	0	0	0	0	9762	58	2	0		0	MMP8	11	102586187	Intron	DEL	AC	TCGA-75-6205-01A-11D-1753-08	40066373	102586187	32420329	50	168051											
TRIM29	23650	broad.mit.edu	37	chr11	119993774	119993774	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtcaccacctaggaagcaGagggtcgggtcagcagagga	16	9	2	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119993774	T	T	119993774	1	4	218	0	1	0	0	0	0	0	0	0	16627	957	33	3		3	TRIM29	11	119993774	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	17407587	119993774	15012742	51	168052											
DENND5B	160518	broad.mit.edu	37	chr12	31566417	31566417	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcttaagatgctgggacaaGagcttcttttctagagacag	11	7	2	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31566417	T	T	31566417	2	4	218	1	0	0	0	0	0	0	0	1	4477	929	33	3		3	DENND5B	12	31566417	Silent	SNP	G	TCGA-75-6205-01A-11D-1753-08		31566417	102285478	52	168053											
ARID2	196528	broad.mit.edu	37	chr12	46298714	46298714	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttctatatgtttttttgCagattgttaaagagacatga	7	4	2	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46298714	G	G	46298714	1	3	218	0	1	0	0	0	0	0	0	0	917	725	25	4		4	ARID2	12	46298714	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08	14732297	46298714	87553181	53	168054											
OR6C68	403284	broad.mit.edu	37	chr12	55886450	55886450	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taacgtataatgcatgtgtcAttcagctattttttgcagac	7	7	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55886450	G	G	55886450	3	3	218	1	0	0	0	0	1	0	0	0	11290	217	8	5	306	5	OR6C68	12	55886450	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	9587736	55886450	77965445	54	168055											
RBMS2	5939	broad.mit.edu	37	chr12	56975221	56975221	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgcaaatttgctgatggcGggccaaagaaacgacagaac	11	8	0	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56975221	A	A	56975221	3	1	218	1	0	0	0	0	1	0	0	0	13257	1116	39	4	687	4	RBMS2	12	56975221	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	1088771	56975221	76876674	55	168056											
NTN4	59277	broad.mit.edu	37	chr12	96059736	96059736	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtacctttatcatgagctgAtaaaatctttatttttagca	5	6	2	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96059736	G	G	96059736	3	3	218	1	0	0	0	0	1	0	0	0	10797	333	12	5	294	5	NTN4	12	96059736	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	39084515	96059736	37792159	56	168057											
C13orf26	122046	broad.mit.edu	37	chr13	31540436	31540436	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctccagacactgaattcCgaaggaattaccaaattcca	5	12	0	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31540436	T	T	31540436	4	4	218	1	0	0	0	0	0	1	0	0	1735	644	23	4	565	4	C13orf26	13	31540436	Nonsense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08		31540436	83629442	57	168058											
TMEM90A	646658	broad.mit.edu	37	chr14	74876105	74876105	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacacagtctggatggtgaCattctctgcagcttggccag	13	10	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74876105	G	G	74876105	3	3	218	1	0	0	0	0	1	0	0	0	16341	478	17	4	385	4	TMEM90A	14	74876105	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08		74876105	32473435	58	168059											
CASC5	57082	broad.mit.edu	37	chr15	40913729	40913729	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatattctaatccatctattCaaggttgtaagactgttttc	5	7	3	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40913729	G	G	40913729	3	3	218	1	0	0	0	0	1	0	0	0	2689	827	29	4	1383	4	CASC5	15	40913729	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08		40913729	61617663	59	168060											
DPP8	54878	broad.mit.edu	37	chr15	65779911	65779911	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtacttagtgaacaacccGtcgtaaataaggctggaaat	10	7	0	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65779911	A	A	65779911	1	1	218	0	1	0	0	0	0	0	0	0	4772	1160	40	4		4	DPP8	15	65779911	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	24866182	65779911	36751481	60	168061											
CD2BP2	10421	broad.mit.edu	37	chr16	30365563	30365563	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccccatcatcatcatcCtcctcctcatcgctatccaa	2	20	4	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30365563	A	A	30365563	3	1	218	1	0	0	0	0	1	0	0	0	3025	680	24	2	886	2	CD2BP2	16	30365563	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08		30365563	59989190	61	168062											
BCKDK	10295	broad.mit.edu	37	chr16	31123250	31123250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccgggtcatggactaccaCttcactactgctgaggccag	11	13	2	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31123250	A	A	31123250	3	1	218	1	0	0	0	0	1	0	0	0	1366	564	20	3	1034	3	BCKDK	16	31123250	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	757687	31123250	59231503	62	168063											
PIK3R5	23533	broad.mit.edu	37	chr17	8785231	8785231	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtagccagaccctctgagtCcagaggccccggtgcctgct	12	15	1	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8785231	T	T	8785231	1	4	218	0	1	0	0	0	0	0	0	0	12017	870	30	4		4	PIK3R5	17	8785231	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08		8785231	72409979	63	168064											
CCR7	1236	broad.mit.edu	37	chr17	38721558	38721558	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaggaagcacccctatgcGctccacccgcatcctccacc	6	21	0	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38721558	A	A	38721558	1	1	218	0	1	0	0	0	0	0	0	0	2976	1102	38	4		4	CCR7	17	38721558	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	29936327	38721558	42473652	64	168065											
NGFR	4804	broad.mit.edu	37	chr17	47587854	47587854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacccaggagcctgagGcacctccagaacaagacctc	9	17	0	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47587854	T	T	47587854	3	4	218	1	0	0	0	0	1	0	0	0	10491	1203	42	3	663	3	NGFR	17	47587854	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	8866296	47587854	33607356	65	168066											
PRKCA	5578	broad.mit.edu	37	chr17	64795593	64795593	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtggtggtgatggtgGtggtggtgatggtggtggtg	25	0	0	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64795593	A	A	64795593	1	1	218	0	1	0	0	0	0	0	0	0	12613	1276	44	4		4	PRKCA	17	64795593	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	17207739	64795593	16399617	66	168067											
MAP2K6	5608	broad.mit.edu	37	chr17	67519520	67519520	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaactgtgggtcagggatgGcagttacttctgtgttgggc	15	6	2	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67519520	A	A	67519520	1	1	218	0	1	0	0	0	0	0	0	0	9333	1218	42	4		4	MAP2K6	17	67519520	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	2723927	67519520	13675690	67	168068											
DLGAP1	9229	broad.mit.edu	37	chr18	3567562	3567562	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctcccctgttttgtcaggTtcttcagcatcatccacctg	6	14	5	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3567562	A	A	3567562	3	1	218	1	0	0	0	0	1	0	0	0	4599	1722	60	5	970	5	DLGAP1	18	3567562	Missense_Mutation	SNP	T	TCGA-75-6205-01A-11D-1753-08		3567562	74509686	68	168069											
XAB2	56949	broad.mit.edu	37	chr19	7684585	7684585	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcgttggcctgtcccccgAggcccaccctggtaatgcca	12	16	0	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7684585	T	T	7684585	1	4	218	0	1	0	0	0	0	0	0	0	17545	319	11	5		5	XAB2	19	7684585	Intron	SNP	A	TCGA-75-6205-01A-11D-1753-08		7684585	51444398	69	168070											
ZNF229	7772	broad.mit.edu	37	chr19	44933924	44933924	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catctatagggcatgtctccCacaggggctctggggtggtt	14	10	3	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44933924	G	G	44933924	2	3	218	1	0	0	0	0	0	0	0	1	17908	581	21	4		4	ZNF229	19	44933924	Silent	SNP	C	TCGA-75-6205-01A-11D-1753-08	37249339	44933924	14195059	70	168071											
DMWD	1762	broad.mit.edu	37	chr19	46295558	46295558	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcagcacccagggccccacGatgcaggccgctcacccgtt	10	18	2	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46295558	C	C	46295558	1	2	218	0	1	0	0	0	0	0	0	0	4633	1073	37	4		4	DMWD	19	46295558	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	1361634	46295558	12833425	71	168072											
ZNF766	90321	broad.mit.edu	37	chr19	52794138	52794138	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaatgtgacaaagcttttaGgcacaagttctccctgacag	9	9	1	3			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52794138	A	A	52794138	3	1	218	1	0	0	0	0	1	0	0	0	18269	1000	35	4	1108	4	ZNF766	19	52794138	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	6498580	52794138	6334845	72	168073											
ZNF347	84671	broad.mit.edu	37	chr19	53644080	53644080	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actctccgatgtcttgcaagGtgtgaattctgagtgaagac	11	8	3	4			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53644080	C	C	53644080	3	2	218	1	0	0	0	0	1	0	0	0	17987	1252	44	4	522	4	ZNF347	19	53644080	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	849942	53644080	5484903	73	168074											
ZNF544	27300	broad.mit.edu	37	chr19	58757682	58757682	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcaggcatctgtgtgcttcGaggatgtggctatggcattc	13	8	2	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58757682	A	A	58757682	3	1	218	1	0	0	0	0	1	0	0	0	18104	1059	37	4	55	4	ZNF544	19	58757682	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	5113602	58757682	371301	74	168075											
ZNF8	7554	broad.mit.edu	37	chr19	58805974	58805974	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactgtgggaagtcgtttaAccataacgcacacctcaccg	9	12	1	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58805974	G	G	58805974	3	3	218	1	0	0	0	0	1	0	0	0	18296	43	2	5	814	5	ZNF8	19	58805974	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	48292	58805974	323009	75	168076											
HCK	3055	broad.mit.edu	37	chr20	30671682	30671682	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgccattctgaggggtttctCtttggtcaattcaggaagct	11	8	4	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30671682	T	T	30671682	1	4	218	0	1	0	0	0	0	0	0	0	7060	928	32	4		4	HCK	20	30671682	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08		30671682	32353838	76	168077											
CEP250	11190	broad.mit.edu	37	chr20	34059816	34059816	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttggttgtttggggtcctgGaataataaattcacttttga	10	4	1	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34059816	T	T	34059816	1	4	218	0	1	0	0	0	0	0	0	0	3282	1189	41	3		3	CEP250	20	34059816	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	3388134	34059816	28965704	77	168078											
PPP1R16B	26051	broad.mit.edu	37	chr20	37546833	37546833	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagcccgtgctactctccGaatttcctaccaagatccca	6	15	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37546833	A	A	37546833	3	1	218	1	0	0	0	0	1	0	0	0	12467	1059	37	4	1266	4	PPP1R16B	20	37546833	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	3487017	37546833	25478687	78	168079											
TOP1	7150	broad.mit.edu	37	chr20	39725971	39725971	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaaaaatttctttaaagActggagaaaggtactgtagc	10	4	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39725971	G	G	39725971	3	3	218	1	0	0	0	0	1	0	0	0	16487	275	10	5	880	5	TOP1	20	39725971	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	2179138	39725971	23299549	79	168080											
CDH22	64405	broad.mit.edu	37	chr20	44806893	44806893	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgggggtcagcatccttgtCctagccacctcctgattgca	10	15	1	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44806893	T	T	44806893	1	4	218	0	1	0	0	0	0	0	0	0	3137	870	30	4		4	CDH22	20	44806893	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08	5080922	44806893	18218627	80	168081											
PREX1	57580	broad.mit.edu	37	chr20	47244080	47244080	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggggcggacgaggcagccActcaccgcggagcaccctgg	16	14	1	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47244080	T	T	47244080	1	4	218	0	1	0	0	0	0	0	0	0	12582	174	6	5		5	PREX1	20	47244080	Intron	SNP	A	TCGA-75-6205-01A-11D-1753-08	2437187	47244080	15781440	81	168082											
IFNGR2	3460	broad.mit.edu	37	chr21	34804879	34804879	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagctattaatgtaagcatAccaggtgagggtggggggta	15	4	0	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34804879	C	C	34804879	1	2	218	0	1	0	0	0	0	0	0	0	7620	406	14	5		5	IFNGR2	21	34804879	Intron	SNP	A	TCGA-75-6205-01A-11D-1753-08		34804879	13325016	82	168083											
DMD	1756	broad.mit.edu	37	chrX	32663039	32663039	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatgacttgccattataaCaagtcatatgttttgttttg	8	5	1	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32663039	G	G	32663039	1	3	218	0	1	0	0	0	0	0	0	0	4620	493	17	4		4	DMD	23	32663039	Intron	SNP	C	TCGA-75-6205-01A-11D-1753-08		32663039	122607521	83	168084											
AKAP4	8852	broad.mit.edu	37	chrX	49955748	49955748	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgctgctttagctgaaAcctgaggaagctgtggggaa	13	8	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49955748	G	G	49955748	3	3	218	1	0	0	0	0	1	0	0	0	453	43	2	5	148	5	AKAP4	23	49955748	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	17292709	49955748	105314812	84	168085											
ZC3H12B	340554	broad.mit.edu	37	chrX	64722914	64722914	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaatccttgggttggaaTgtgcaatgattccagggagc	15	6	0	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64722914	C	C	64722914	3	2	218	1	0	0	0	0	1	0	0	0	17688	1464	51	5	2354	5	ZC3H12B	23	64722914	Missense_Mutation	SNP	T	TCGA-75-6205-01A-11D-1753-08	14767166	64722914	90547646	85	168086											
MAGEE2	139599	broad.mit.edu	37	chrX	75004327	75004327	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcggttcccattcaagaggAtgtggcctaggactagggcc	13	11	1	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75004327	C	C	75004327	3	2	218	1	0	0	0	0	1	0	0	0	9278	333	12	5	1015	5	MAGEE2	23	75004327	Missense_Mutation	SNP	A	TCGA-75-6205-01A-11D-1753-08	10281413	75004327	80266233	86	168087											
NOX1	27035	broad.mit.edu	37	chrX	100117349	100117349	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatgcaaggtcaggggctGgggcatgagaatgagggttc	17	5	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100117349	A	A	100117349	1	1	218	0	1	0	0	0	0	0	0	0	10651	1363	47	4		4	NOX1	23	100117349	Intron	SNP	G	TCGA-75-6205-01A-11D-1753-08	25113022	100117349	55153211	87	168088											
TRMT2B	79979	broad.mit.edu	37	chrX	100274014	100274014	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggaaacaaaaactagcGtgtggatggccctgaagttt	12	7	0	1			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100274014	A	A	100274014	3	1	218	1	0	0	0	0	1	0	0	0	16691	1145	40	4	188	4	TRMT2B	23	100274014	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	156665	100274014	54996546	88	168089											
VSIG1	340547	broad.mit.edu	37	chrX	107320448	107320448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgccccagagcctgcccCaggatcagagcctatggcag	12	16	1	2			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107320448	A	A	107320448	3	1	218	1	0	0	0	0	1	0	0	0	17349	594	21	2	1139	2	VSIG1	23	107320448	Missense_Mutation	SNP	C	TCGA-75-6205-01A-11D-1753-08	7046434	107320448	47950112	89	168090											
AMOT	154796	broad.mit.edu	37	chrX	112024327	112024327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatccttctcaataatctGggcatggagggtcttaatcc	10	10	3	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112024327	T	T	112024327	3	4	218	1	0	0	0	0	1	0	0	0	582	1357	47	2	1006	2	AMOT	23	112024327	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	4703879	112024327	43246233	90	168091											
VBP1	7411	broad.mit.edu	37	chrX	154456758	154456758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgataaaatgtgtctgtgGttgggggtaagtaaatgtta	13	3	1	0			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154456758	T	T	154456758	3	4	218	1	0	0	0	0	1	0	0	0	17263	1270	44	3	392	3	VBP1	23	154456758	Missense_Mutation	SNP	G	TCGA-75-6205-01A-11D-1753-08	42432431	154456758	813802	91	168092											
AJAP1	55966	broad.mit.edu	37	chr1	4832298	4832298	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgtgtttgtgggtttccGgcctctgcccgtccccctac	11	14	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4832298	A	A	4832298	1	1	219	0	1	0	0	0	0	0	0	0	438	1131	39	4		4	AJAP1	1	4832298	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08		4832298	244418323	1	168093											
PTCHD2	57540	broad.mit.edu	37	chr1	11560979	11560979	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttggtacctagggctgggcGaactgcaccacagggcacct	14	12	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11560979	A	A	11560979	1	1	219	0	1	0	0	0	0	0	0	0	12839	1073	37	4		4	PTCHD2	1	11560979	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	6728681	11560979	237689642	2	168094											
SPEN	23013	broad.mit.edu	37	chr1	16242663	16242663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcgccccttggatgaaagGatagatgaatttcaccccaa	8	10	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16242663	T	T	16242663	3	4	219	1	0	0	0	0	1	0	0	0	15156	1165	41	3	1306	3	SPEN	1	16242663	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	4681684	16242663	233007958	3	168095											
KIF17	57576	broad.mit.edu	37	chr1	21009088	21009088	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtgtagggatgcctggatCggggggtctcacccatctct	15	10	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21009088	G	G	21009088	1	3	219	0	1	0	0	0	0	0	0	0	8349	899	31	4		4	KIF17	1	21009088	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	4766425	21009088	228241533	4	168096											
EIF4G3	8672	broad.mit.edu	37	chr1	21167521	21167521	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttccacacactgcatggcttCctgttccaacagcaaagaaa	6	13	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21167521	A	A	21167521	4	1	219	1	0	0	0	0	0	1	0	0	5080	869	30	3	1068	3	EIF4G3	1	21167521	Nonsense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	158433	21167521	228083100	5	168097											
FUCA1	2517	broad.mit.edu	37	chr1	24180718	24180718	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgatctcgcttttcttcaTaattttacctccaaaatatg	3	9	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24180718	C	C	24180718	1	2	219	0	1	0	0	0	0	0	0	0	6154	1421	49	5		5	FUCA1	1	24180718	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	3013197	24180718	225069903	6	168098											
C1orf173	127254	broad.mit.edu	37	chr1	75037634	75037634	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcagctctcccctccaGtcctgcgcaggagtcgtgat	9	17	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75037634	T	T	75037634	3	4	219	1	0	0	0	0	1	0	0	0	2034	1020	36	3	836	3	C1orf173	1	75037634	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	50856916	75037634	174212987	7	168099											
LPHN2	23266	broad.mit.edu	37	chr1	82456731	82456731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctaccagatcagcaggGgcaatagtgatggttatata	12	6	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456731	T	T	82456731	3	4	219	1	0	0	0	0	1	0	0	0	9003	1232	43	2	4188	2	LPHN2	1	82456731	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	7419097	82456731	166793890	8	168100											
COL11A1	1301	broad.mit.edu	37	chr1	103427811	103427811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgagataccttgaggaCctggatcaccctaaagaata	8	11	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103427811	A	A	103427811	3	1	219	1	0	0	0	0	1	0	0	0	3699	507	18	3	2497	3	COL11A1	1	103427811	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	20971080	103427811	145822810	9	168101											
COL11A1	1301	broad.mit.edu	37	chr1	103484401	103484401	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgctggtcctggtggtccTtcgacaagcataccctataa	9	13	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103484401	A	A	103484401	3	1	219	1	0	0	0	0	1	0	0	0	3699	1606	56	5	4329	5	COL11A1	1	103484401	Missense_Mutation	SNP	T	TCGA-75-6206-01A-11D-1753-08	56590	103484401	145766220	10	168102											
PKLR	5313	broad.mit.edu	37	chr1	155270722	155270722	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccctctctgtgggtctgctCcacactgttgggttgtcaga	11	12	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155270722	T	T	155270722	1	4	219	0	1	0	0	0	0	0	0	0	12071	870	30	4		4	PKLR	1	155270722	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	51786321	155270722	93979899	11	168103											
APOA1BP	128240	broad.mit.edu	37	chr1	156562527	156562527	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgtgctctgctcttccttCgtgtttccaggctgagctca	9	14	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156562527	T	T	156562527	1	4	219	0	1	0	0	0	0	0	0	0	783	899	31	4		4	APOA1BP	1	156562527	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	1291805	156562527	92688094	12	168104											
RCSD1	92241	broad.mit.edu	37	chr1	167653316	167653316	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcaggcccagcggagaGggagggaggaggcttggtag	21	7	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167653316	C	C	167653316	1	2	219	0	1	0	0	0	0	0	0	0	13293	1015	35	4		4	RCSD1	1	167653316	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	11090789	167653316	81597305	13	168105											
GPR161	23432	broad.mit.edu	37	chr1	168054736	168054736	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcctccccgggccagcctCtcaggctgcagccccacggc	10	21	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168054736	G	G	168054736	1	3	219	0	1	0	0	0	0	0	0	0	6730	928	32	4		4	GPR161	1	168054736	3'UTR	SNP	C	TCGA-75-6206-01A-11D-1753-08	401420	168054736	81195885	14	168106											
BAT2L2	23215	broad.mit.edu	37	chr1	171501586	171501586	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaagcaaagacgaagacaAcaatcagaaatttctgcagc	9	8	2	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171501586	G	G	171501586	2	3	219	1	0	0	0	0	0	0	0	1	1326	40	2	5		5	BAT2L2	1	171501586	Silent	SNP	A	TCGA-75-6206-01A-11D-1753-08	3446850	171501586	77749035	15	168107											
BAT2L2	23215	broad.mit.edu	37	chr1	171502149	171502149	+	Intron	SNP	A	C	C													aaaactttacaaagagctttAtgttggttacagtttggggt							TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	171502149	C	C	171502149	1	2	219	0	1	0	0	0	0	0	0	0	1326	464	16	5		5	BAT2L2	1	171502149	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	563	171502149	77748472	16	168108	704	2									
BAT2L2	23215	broad.mit.edu	37	chr1	171502152	171502152	+	Intron	SNP	T	G	G													actttacaaagagctttatgTtggttacagtttggggtttg							TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171502152	G	G	171502152	1	3	219	0	1	0	0	0	0	0	0	0	1326	1740	60	5		5	BAT2L2	1	171502152	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	3	171502152	77748469	17	168109	704	2									
SLC9A11	284525	broad.mit.edu	37	chr1	173556830	173556830	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttagtgaattcacagaaCgaagaggatctataatgcca	8	6	2	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173556830	A	A	173556830	3	1	219	1	0	0	0	0	1	0	0	0	14825	536	19	3	2973	3	SLC9A11	1	173556830	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	2054678	173556830	75693791	18	168110											
SEC16B	89866	broad.mit.edu	37	chr1	177935061	177935061	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagccactgtgggtgtccatGatagtaataacttccataag	9	9	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	177935061	C	C	177935061	3	2	219	1	0	0	0	0	1	0	0	0	14100	1290	45	4	2899	4	SEC16B	1	177935061	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	4378231	177935061	71315560	19	168111											
SOAT1	6646	broad.mit.edu	37	chr1	179316735	179316735	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgttaatcttatttttagGtgtgctgattctcttcctta	6	6	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179316735	T	T	179316735	3	4	219	1	0	0	0	0	1	0	0	0	15024	1275	44	3	1160	3	SOAT1	1	179316735	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	1381674	179316735	69933886	20	168112											
KCNT2	343450	broad.mit.edu	37	chr1	196311117	196311117	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccggaatgcctaaacacatGaacacaatatgcattctatt	5	10	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	196311117	T	T	196311117	1	4	219	0	1	0	0	0	0	0	0	0	8162	1305	45	3		3	KCNT2	1	196311117	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	16994382	196311117	52939504	21	168113											
TNNT2	7139	broad.mit.edu	37	chr1	201334548	201334548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctctggcagggcctggcGcctggccagggaaggggtaa	18	11	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201334548	A	A	201334548	1	1	219	0	1	0	0	0	0	0	0	0	16454	1102	38	4		4	TNNT2	1	201334548	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	5023431	201334548	47916073	22	168114											
IPO9	55705	broad.mit.edu	37	chr1	201842132	201842132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcctctccctatacgaaGgggctaaggatacctgggtg	11	11	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201842132	T	T	201842132	1	4	219	0	1	0	0	0	0	0	0	0	7869	1015	35	2		2	IPO9	1	201842132	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	507584	201842132	47408489	23	168115											
IKBKE	9641	broad.mit.edu	37	chr1	206651729	206651729	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaaccttctctacccaAgcagcagtgcatgtccaaag	9	12	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206651729	T	T	206651729	1	4	219	0	1	0	0	0	0	0	0	0	7682	87	3	5		5	IKBKE	1	206651729	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	4809597	206651729	42598892	24	168116											
PLXNA2	5362	broad.mit.edu	37	chr1	208252776	208252776	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagctctcccgctgggcTgcacacttgtagagatggac	12	14	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208252776	A	A	208252776	2	1	219	1	0	0	0	0	0	0	0	1	12215	1567	55	5		5	PLXNA2	1	208252776	Silent	SNP	T	TCGA-75-6206-01A-11D-1753-08	1601047	208252776	40997845	25	168117											
KCNH1	3756	broad.mit.edu	37	chr1	211280696	211280696	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggccagtccactatctgagCattccccaacacaaaattag	6	13	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211280696	G	G	211280696	3	3	219	1	0	0	0	0	1	0	0	0	8101	710	25	4	2906	4	KCNH1	1	211280696	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	3027920	211280696	37969925	26	168118											
RD3	343035	broad.mit.edu	37	chr1	211652496	211652496	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgaagggcgagatgcgcGcgcgggtcttgaaggtggcc	20	9	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	211652496	T	T	211652496	3	4	219	1	0	0	0	0	1	0	0	0	13295	1087	38	3	121	3	RD3	1	211652496	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	371800	211652496	37598125	27	168119											
RYR2	6262	broad.mit.edu	37	chr1	237817702	237817702	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctggggcatttttgatgcCctgtctcaaaaggtaattta	9	7	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237817702	T	T	237817702	2	4	219	1	0	0	0	0	0	0	0	1	13880	610	22	4		4	RYR2	1	237817702	Silent	SNP	C	TCGA-75-6206-01A-11D-1753-08	26165206	237817702	11432919	28	168120											
SMYD3	64754	broad.mit.edu	37	chr1	245927308	245927308	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagcagaaaaaaaggatgCcaggcagaactatgtgagat	11	6	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	245927308	T	T	245927308	1	4	219	0	1	0	0	0	0	0	0	0	14937	754	26	4		4	SMYD3	1	245927308	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	8109606	245927308	3323313	29	168121											
NLRP3	114548	broad.mit.edu	37	chr1	247588030	247588030	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacagcagatggagagtGgcaagagccttgcccagaca	13	9	0	5			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247588030	T	T	247588030	3	4	219	1	0	0	0	0	1	0	0	0	10573	1348	47	2	1295	2	NLRP3	1	247588030	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	1660722	247588030	1662591	30	168122											
NLRP3	114548	broad.mit.edu	37	chr1	247597385	247597385	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgttctgatgctttctgCctctgttcttggcatgaagg	12	8	4	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247597385	G	G	247597385	1	3	219	0	1	0	0	0	0	0	0	0	10573	754	26	4		4	NLRP3	1	247597385	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	9355	247597385	1653236	31	168123											
OR2W3	343171	broad.mit.edu	37	chr1	248059460	248059460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccggatggcctgcgtcaGcactgtggccatcgaaggca	14	12	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248059460	T	T	248059460	3	4	219	1	0	0	0	0	1	0	0	0	11127	971	34	3	574	3	OR2W3	1	248059460	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	462075	248059460	1191161	32	168124											
NT5C1B	93034	broad.mit.edu	37	chr2	18758102	18758102	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaagttggtaagatatgCcttcaaatagccaatggggt	10	6	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18758102	T	T	18758102	3	4	219	1	0	0	0	0	1	0	0	0	10781	739	26	4	583	4	NT5C1B	2	18758102	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08		18758102	224441271	33	168125											
FAM179A	165186	broad.mit.edu	37	chr2	29255788	29255788	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttctttatcttgctctctCtcctgtggcagattttatgg	8	9	4	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29255788	A	A	29255788	1	1	219	0	1	0	0	0	0	0	0	0	5550	928	32	3		3	FAM179A	2	29255788	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	10497686	29255788	213943585	34	168126											
FAM179A	165186	broad.mit.edu	37	chr2	29268120	29268120	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtactgtgggtatgtggCcctgcaaacccctagtgctg	13	11	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29268120	T	T	29268120	1	4	219	0	1	0	0	0	0	0	0	0	5550	754	26	4		4	FAM179A	2	29268120	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	12332	29268120	213931253	35	168127											
USP39	10713	broad.mit.edu	37	chr2	85866372	85866372	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccataatgacgagtaccaggAgacaatggtggagtccactt	11	9	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85866372	C	C	85866372	3	2	219	1	0	0	0	0	1	0	0	0	17197	304	11	5	1176	5	USP39	2	85866372	Missense_Mutation	SNP	A	TCGA-75-6206-01A-11D-1753-08	56598252	85866372	157333001	36	168128											
TMEM131	23505	broad.mit.edu	37	chr2	98383103	98383103	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atggaaaatacaaatttattCctctgttttggaggacagaa	8	5	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98383103	A	A	98383103	1	1	219	0	1	0	0	0	0	0	0	0	16167	870	30	3		3	TMEM131	2	98383103	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	12516731	98383103	144816270	37	168129											
VWA3B	200403	broad.mit.edu	37	chr2	98804631	98804631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttacaagtggtctcctcGctctggacattctcatctgc	8	12	4	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98804631	T	T	98804631	1	4	219	0	1	0	0	0	0	0	0	0	17368	1102	38	3		3	VWA3B	2	98804631	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	421528	98804631	144394742	38	168130											
MFSD9	84804	broad.mit.edu	37	chr2	103347333	103347333	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgataataacttttgtttaCattctttttgtctgtaaaaa	4	4	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103347333	T	T	103347333	1	4	219	0	1	0	0	0	0	0	0	0	9632	493	17	4		4	MFSD9	2	103347333	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	4542702	103347333	139852040	39	168131											
STEAP3	55240	broad.mit.edu	37	chr2	120012442	120012442	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caggtaaagtagtctctagtCtgccagccagcttcagcgtg	11	11	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120012442	T	T	120012442	1	4	219	0	1	0	0	0	0	0	0	0	15397	928	32	4		4	STEAP3	2	120012442	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	16665109	120012442	123186931	40	168132			1	135		2	2	15	C		9.948898e-05
STEAP3	55240	broad.mit.edu	37	chr2	120012456	120012456	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctagtctgccagccagcttCagcgtggccctggcccacct	10	17	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120012456	T	T	120012456	1	4	219	0	1	0	0	0	0	0	0	0	15397	841	29	4		4	STEAP3	2	120012456	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	14	120012456	123186917	41	168133			1	135		2	2	15	C		9.948898e-05
CLASP1	23332	broad.mit.edu	37	chr2	122159287	122159287	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtagttcacatattgaaTtcacgatctcctccaaagtc	5	11	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122159287	C	C	122159287	1	2	219	0	1	0	0	0	0	0	0	0	3485	1508	52	5		5	CLASP1	2	122159287	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	2146831	122159287	121040086	42	168134											
LRP1B	53353	broad.mit.edu	37	chr2	141707953	141707953	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagcccacctcatcactcCcgtccccacagtcgtcatct	4	21	4	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141707953	A	A	141707953	3	1	219	1	0	0	0	0	1	0	0	0	9042	623	22	2	11100	2	LRP1B	2	141707953	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	19548666	141707953	101491420	43	168135											
PRPF40A	55660	broad.mit.edu	37	chr2	153529655	153529655	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaactgcaaacatcaagcaTttccctttgcaggagtttga	7	10	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153529655	A	A	153529655	1	1	219	0	1	0	0	0	0	0	0	0	12677	1508	52	5		5	PRPF40A	2	153529655	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	11821702	153529655	89669718	44	168136											
GPR155	151556	broad.mit.edu	37	chr2	175326016	175326016	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggatcaccaatctgataTgcaataaattgaaatagatt	6	5	2	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	175326016	C	C	175326016	1	2	219	0	1	0	0	0	0	0	0	0	6725	1479	51	5		5	GPR155	2	175326016	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	21796361	175326016	67873357	45	168137											
CERKL	375298	broad.mit.edu	37	chr2	182430105	182430105	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tacacatcagtccaacacttTagcaaattggttcacctaat	4	11	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182430105	A	A	182430105	1	1	219	0	1	0	0	0	0	0	0	0	3298	1769	61	5		5	CERKL	2	182430105	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	7104089	182430105	60769268	46	168138											
PARD3B	117583	broad.mit.edu	37	chr2	206418005	206418005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcattgtcagtaaccaagGtgtataatggatcttcatct	8	7	4	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206418005	T	T	206418005	1	4	219	0	1	0	0	0	0	0	0	0	11538	1276	44	3		3	PARD3B	2	206418005	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	23987900	206418005	36781368	47	168139											
KIAA1486	57624	broad.mit.edu	37	chr2	226516061	226516061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtatattccaagaataagtAgcgaaacaaacagaaagact	7	6	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	226516061	T	T	226516061	1	4	219	0	1	0	0	0	0	0	0	0	8307	435	15	5		5	KIAA1486	2	226516061	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	20098056	226516061	16683312	48	168140											
SRGAP3	9901	broad.mit.edu	37	chr3	9055543	9055543	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctgtaacataaaggggCctttcagcgtgcctttcatc	9	10	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9055543	A	A	9055543	1	1	219	0	1	0	0	0	0	0	0	0	15265	754	26	3		3	SRGAP3	3	9055543	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08		9055543	188966887	49	168141											
TMEM43	79188	broad.mit.edu	37	chr3	14170966	14170966	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttaaaaccagctcccagCcaggcttcctggaacggctg	10	13	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14170966	T	T	14170966	3	4	219	1	0	0	0	0	1	0	0	0	16290	739	26	4	73	4	TMEM43	3	14170966	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	5115423	14170966	183851464	50	168142											
TRIM71	131405	broad.mit.edu	37	chr3	32859513	32859513	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccacccacctcgtccgctCtctcctcctcctcctcctct	2	26	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32859513	G	G	32859513	1	3	219	0	1	0	0	0	0	0	0	0	16669	928	32	4		4	TRIM71	3	32859513	5'UTR	SNP	C	TCGA-75-6206-01A-11D-1753-08	18688547	32859513	165162917	51	168143											
TRIM71	131405	broad.mit.edu	37	chr3	32859538	32859538	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctcctcctcctcttcctCtctggtctcctccctcctcc	2	24	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32859538	G	G	32859538	1	3	219	0	1	0	0	0	0	0	0	0	16669	928	32	4		4	TRIM71	3	32859538	5'UTR	SNP	C	TCGA-75-6206-01A-11D-1753-08	25	32859538	165162892	52	168144											
KIAA1407	57577	broad.mit.edu	37	chr3	113729802	113729802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcggcgccatgccaatgCtgccattctgtaaagcagtg	11	12	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113729802	A	A	113729802	3	1	219	1	0	0	0	0	1	0	0	0	8299	796	28	3	1616	3	KIAA1407	3	113729802	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	80870264	113729802	84292628	53	168145											
QTRTD1	79691	broad.mit.edu	37	chr3	113795571	113795571	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaatggttaaaaacatAtcatccttcttacctcaggt	5	9	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113795571	G	G	113795571	1	3	219	0	1	0	0	0	0	0	0	0	12994	464	16	5		5	QTRTD1	3	113795571	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	65769	113795571	84226859	54	168146											
CLDN18	51208	broad.mit.edu	37	chr3	137717827	137717827	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagacttgtacaacaacccCgtaacagctgttttcaacta	5	12	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137717827	A	A	137717827	2	1	219	1	0	0	0	0	0	0	0	1	3510	639	23	1		1	CLDN18	3	137717827	Silent	SNP	C	TCGA-75-6206-01A-11D-1753-08	23922256	137717827	60304603	55	168147											
GAK	2580	broad.mit.edu	37	chr4	898004	898004	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgtgtggagggagccacTaccttgtggtccctgtggat	15	10	0	0	rs138351215	by1000genomes	TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	898004	G	G	898004	1	3	219	0	1	0	0	0	0	0	0	0	6257	1537	53	5		5	GAK	4	898004	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08		898004	190256272	56	168148											
CRIPAK	285464	broad.mit.edu	37	chr4	1388837	1388867	+	Frame_Shift_Del	DEL	TCACACGTGCCAACGTGGAGTGCCCGCCTGA	-	-													catgtggagtgcccgcctgcTcacacgtgccaacgtggagt					rs74511366	byFrequency;by1000genomes	TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	1388867	-	-	1388837	7	5	219	1	0	1	0	1	0	0	0	0	3909	1551	54	0	540	0	CRIPAK	4	1388837	Frame_Shift_Del	DEL	TCACACGTGCCAACGTGGAGTGCCCGCCTGA	TCGA-75-6206-01A-11D-1753-08	490833	1388837	189765439	57	168149											
FRYL	285527	broad.mit.edu	37	chr4	48501917	48501917	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatcatttcagtggcaactGttaaaaatactcatgttttt	6	6	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48501917	C	C	48501917	1	2	219	0	1	0	0	0	0	0	0	0	6124	1392	48	4		4	FRYL	4	48501917	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	47113080	48501917	142652359	58	168150											
RASL11B	65997	broad.mit.edu	37	chr4	53728630	53728630	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgcgcagcgctagcattctCcagtccctcagtcccttccc	7	20	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53728630	G	G	53728630	1	3	219	0	1	0	0	0	0	0	0	0	13190	870	30	4		4	RASL11B	4	53728630	5'UTR	SNP	C	TCGA-75-6206-01A-11D-1753-08	5226713	53728630	137425646	59	168151											
UGT2A1	10941	broad.mit.edu	37	chr4	70504968	70504968	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accatcacagagttgtatgtTaatttgaaagaaagtgtcta	8	5	2	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70504968	A	A	70504968	1	1	219	0	1	0	0	0	0	0	0	0	17079	1754	61	5		5	UGT2A1	4	70504968	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	16776338	70504968	120649308	60	168152											
EXOSC9	5393	broad.mit.edu	37	chr4	122723066	122723066	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgcattgtggaacttGgaaaaacaaggtaacaggat	12	5	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122723066	T	T	122723066	4	4	219	1	0	0	0	0	0	1	0	0	5364	1349	47	2	157	2	EXOSC9	4	122723066	Nonsense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	52218098	122723066	68431210	61	168153											
SMARCA5	8467	broad.mit.edu	37	chr4	144459676	144459676	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggataattgattagtcttagTtttggttacccttaaatttt	7	4	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144459676	C	C	144459676	1	2	219	0	1	0	0	0	0	0	0	0	14885	1740	60	5		5	SMARCA5	4	144459676	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	21736610	144459676	46694600	62	168154											
NPY5R	4889	broad.mit.edu	37	chr4	164272501	164272502	+	Frame_Shift_Ins	INS	-	A	A													aaacgttctgttacaagaatINSaaaaaagagatctcgaagtg					rs76477129		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	164272502	A	A	164272501	7	5	219	1	0	1	1	0	0	0	0	0	10705	1406	49	0	1078	0	NPY5R	4	164272501	Frame_Shift_Ins	INS	-	TCGA-75-6206-01A-11D-1753-08	19812825	164272501	26881775	63	168155											
SPOCK3	50859	broad.mit.edu	37	chr4	167663318	167663318	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgtgcctttggaagacatGtattacatattaattggttt	8	4	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167663318	C	C	167663318	1	2	219	0	1	0	0	0	0	0	0	0	15199	1392	48	4		4	SPOCK3	4	167663318	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	3390817	167663318	23490958	64	168156											
ODZ3	55714	broad.mit.edu	37	chr4	183676258	183676259	+	Missense_Mutation	DNP	CC	AA	AA													tgccagttcgagtggtgtctCctgataaccaagtgatatgg					rs77172314		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	183676259	AA	AA	183676258	3	1	219	1	0	0	0	0	1	0	0	0	10931	855	30	3	4820	3	ODZ3	4	183676258	Missense_Mutation	DNP	CC	TCGA-75-6206-01A-11D-1753-08	16012940	183676258	7478018	65	168157											
WWC2	80014	broad.mit.edu	37	chr4	184169884	184169884	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagtcttgctaagctgcaGgagcggtttcatttggatca	12	8	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184169884	T	T	184169884	3	4	219	1	0	0	0	0	1	0	0	0	17539	991	35	2	776	2	WWC2	4	184169884	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	493626	184169884	6984392	66	168158											
IRF2	3660	broad.mit.edu	37	chr4	185350101	185350101	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgtttcagccaggacctctCtcacacatacacccaccctg	6	17	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185350101	T	T	185350101	1	4	219	0	1	0	0	0	0	0	0	0	7898	928	32	4		4	IRF2	4	185350101	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	1180217	185350101	5804175	67	168159											
PLEKHG4B	153478	broad.mit.edu	37	chr5	169412	169412	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aattgcttttaataaagtgtCcgtggggggccgtgtgcccc	13	9	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169412	A	A	169412	1	1	219	0	1	0	0	0	0	0	0	0	12167	870	30	3		3	PLEKHG4B	5	169412	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08		169412	180745848	68	168160											
KIAA0947	23379	broad.mit.edu	37	chr5	5463318	5463318	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttattgctcttaaatgtaAataacaacatgaccactgag	6	7	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5463318	G	G	5463318	3	3	219	1	0	0	0	0	1	0	0	0	8272	14	1	5	3921	5	KIAA0947	5	5463318	Missense_Mutation	SNP	A	TCGA-75-6206-01A-11D-1753-08	5293906	5463318	175451942	69	168161											
MARCH6	10299	broad.mit.edu	37	chr5	10381944	10381944	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatgccttcacggcttccaAttcaagacatatttgctgga	7	10	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10381944	T	T	10381944	3	4	219	1	0	0	0	0	1	0	0	0	9397	101	4	5	237	5	MARCH6	5	10381944	Missense_Mutation	SNP	A	TCGA-75-6206-01A-11D-1753-08	4918626	10381944	170533316	70	168162											
CDH10	1008	broad.mit.edu	37	chr5	24493082	24493082	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatatatctcttatccatgGgtataatctgcacttaagat	5	8	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24493082	A	A	24493082	1	1	219	0	1	0	0	0	0	0	0	0	3126	1247	43	4		4	CDH10	5	24493082	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	14111138	24493082	156422178	71	168163											
UGT3A1	133688	broad.mit.edu	37	chr5	35965591	35965591	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaatcagagttaacaaacCacaactctgctttcagtaga	5	10	3	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35965591	T	T	35965591	4	4	219	1	0	0	0	0	0	1	0	0	17089	595	21	4	929	4	UGT3A1	5	35965591	Nonsense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	11472509	35965591	144949669	72	168164											
UGT3A2	167127	broad.mit.edu	37	chr5	36038119	36038119	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacggatgcttgggtgagCtgttgtaaataagaaagagg	15	4	0	4			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36038119	A	A	36038119	5	1	219	1	0	0	0	0	0	0	1	0	17090	811	28	3	504	3	UGT3A2	5	36038119	Splice_Site	SNP	C	TCGA-75-6206-01A-11D-1753-08	72528	36038119	144877141	73	168165											
GFM2	84340	broad.mit.edu	37	chr5	74032775	74032775	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgagctgcagctaatgcactGgacttggatgagacaatggt	13	8	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74032775	C	C	74032775	2	2	219	1	0	0	0	0	0	0	0	1	6406	1335	47	4		4	GFM2	5	74032775	Silent	SNP	G	TCGA-75-6206-01A-11D-1753-08	37994656	74032775	106882485	74	168166											
IQGAP2	10788	broad.mit.edu	37	chr5	75979701	75979701	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgacaagcaaatatgacatAgaggacggtgaagctataga	11	5	0	5			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75979701	T	T	75979701	2	4	219	1	0	0	0	0	0	0	0	1	7885	410	15	5		5	IQGAP2	5	75979701	Silent	SNP	A	TCGA-75-6206-01A-11D-1753-08	1946926	75979701	104935559	75	168167											
CMYA5	202333	broad.mit.edu	37	chr5	79041306	79041306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtaaaatgggctcaaaCaccttgcgcccactctggca	8	14	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79041306	A	A	79041306	1	1	219	0	1	0	0	0	0	0	0	0	3622	493	17	3		3	CMYA5	5	79041306	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	3061605	79041306	101873954	76	168168											
ZNF608	57507	broad.mit.edu	37	chr5	123976786	123976786	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aatagaatacaaagatgtggGaatagccttagctgtgtcac	10	6	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123976786	C	C	123976786	1	2	219	0	1	0	0	0	0	0	0	0	18161	1189	41	4		4	ZNF608	5	123976786	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	44935480	123976786	56938474	77	168169											
SLC12A2	6558	broad.mit.edu	37	chr5	127488427	127488427	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggatcctctacacaagccCtgacttacctgaatgcactg	9	13	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127488427	G	G	127488427	3	3	219	1	0	0	0	0	1	0	0	0	14496	680	24	4	2351	4	SLC12A2	5	127488427	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	3511641	127488427	53426833	78	168170											
CDC25C	995	broad.mit.edu	37	chr5	137621421	137621421	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaagggcaatctgctccCgcagctgccgctccccttcc	9	19	1	1	rs139145068	byFrequency;by1000genomes	TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137621421	T	T	137621421	3	4	219	1	0	0	0	0	1	0	0	0	3094	652	23	4	43	4	CDC25C	5	137621421	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	10132994	137621421	43293839	79	168171											
KDM3B	51780	broad.mit.edu	37	chr5	137751050	137751050	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttaagcatcatcagatttctCtgagaatttggatctttatt	6	6	4	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137751050	G	G	137751050	1	3	219	0	1	0	0	0	0	0	0	0	8197	928	32	4		4	KDM3B	5	137751050	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	129629	137751050	43164210	80	168172											
PCDHA6	56142	broad.mit.edu	37	chr5	140208303	140208303	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagctcctgcacacaaCttattcctgacagccacaga	8	13	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140208303	G	G	140208303	3	3	219	1	0	0	0	0	1	0	0	0	11622	564	20	4	629	4	PCDHA6	5	140208303	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	2457253	140208303	40706957	81	168173											
PCDHA6	56142	broad.mit.edu	37	chr5	140208338	140208338	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacagatgggggcaaacctgAgctcacaggcactgttcagc	12	12	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140208338	T	T	140208338	3	4	219	1	0	0	0	0	1	0	0	0	11622	304	11	5	664	5	PCDHA6	5	140208338	Missense_Mutation	SNP	A	TCGA-75-6206-01A-11D-1753-08	35	140208338	40706922	82	168174											
AFAP1L1	134265	broad.mit.edu	37	chr5	148715445	148715445	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcagaaggggtaatcctCagatcttattcagaacctat	7	10	4	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148715445	A	A	148715445	1	1	219	0	1	0	0	0	0	0	0	0	354	841	29	3		3	AFAP1L1	5	148715445	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	8507107	148715445	32199815	83	168175											
GLRA1	2741	broad.mit.edu	37	chr5	151229940	151229940	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaagactttggagtgatAgcaacctttgatcccaagcc	10	9	0	4			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151229940	C	C	151229940	1	2	219	0	1	0	0	0	0	0	0	0	6518	435	15	5		5	GLRA1	5	151229940	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	2514495	151229940	29685320	84	168176											
GRIA1	2890	broad.mit.edu	37	chr5	152870284	152870284	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttaagtgttcggattccAagggaaacagacaaacctca	9	8	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152870284	T	T	152870284	1	4	219	0	1	0	0	0	0	0	0	0	6833	145	5	5		5	GRIA1	5	152870284	5'UTR	SNP	A	TCGA-75-6206-01A-11D-1753-08	1640344	152870284	28044976	85	168177											
TIMD4	91937	broad.mit.edu	37	chr5	156349220	156349221	+	Missense_Mutation	DNP	CC	AT	AT													tcttcattgacatgggtattCcatccatctgatgggacaca							TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	156349221	AT	AT	156349220	3	1	219	1	0	0	0	0	1	0	0	0	16026	855	30	3	246	3	TIMD4	5	156349220	Missense_Mutation	DNP	CC	TCGA-75-6206-01A-11D-1753-08	3478936	156349220	24566040	86	168178											
ADAM19	8728	broad.mit.edu	37	chr5	156915334	156915334	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggaggaggcctcctggacGactccgtcctctctatttga	11	12	1	1	rs35242691		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156915334	T	T	156915334	4	4	219	1	0	0	0	0	0	1	0	0	240	1059	37	3	279	3	ADAM19	5	156915334	Nonsense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	566114	156915334	23999926	87	168179											
TRIM38	10475	broad.mit.edu	37	chr6	25983308	25983308	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctgggtgacagcaacactCcatctcaaaataaaataaaa	6	10	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25983308	G	G	25983308	1	3	219	0	1	0	0	0	0	0	0	0	16636	870	30	4		4	TRIM38	6	25983308	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08		25983308	145131759	88	168180											
ATF6B	1388	broad.mit.edu	37	chr6	32084756	32084756	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaggacagctactggggGtacagctcttgaaagtggaa	14	8	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32084756	T	T	32084756	1	4	219	0	1	0	0	0	0	0	0	0	1089	1276	44	3		3	ATF6B	6	32084756	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	6101448	32084756	139030311	89	168181											
COL11A2	1302	broad.mit.edu	37	chr6	33145920	33145920	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcacttacagggggtccagGaataccaggtgggcctttgg	15	9	1	0	rs121912952		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33145920	T	T	33145920	3	4	219	1	0	0	0	0	1	0	0	0	3700	1174	41	3	3533	3	COL11A2	6	33145920	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	1061164	33145920	137969147	90	168182											
TCP11	6954	broad.mit.edu	37	chr6	35086069	35086069	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacagactccacttttgtttCcagtgcctgggctggggaaa	11	10	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35086069	A	A	35086069	4	1	219	1	0	0	0	0	0	1	0	0	15835	864	30	3	26	3	TCP11	6	35086069	Nonsense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	1940149	35086069	136028998	91	168183											
BAI3	577	broad.mit.edu	37	chr6	69949197	69949197	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttattgataatctaaacattCattctaaaatggagaacttc	4	6	3	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69949197	G	G	69949197	1	3	219	0	1	0	0	0	0	0	0	0	1305	841	29	4		4	BAI3	6	69949197	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	34863128	69949197	101165870	92	168184											
SIM1	6492	broad.mit.edu	37	chr6	100911054	100911054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccgagctaaacttcccttTgcaaaatatatatgtaaata	5	8	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100911054	A	A	100911054	1	1	219	0	1	0	0	0	0	0	0	0	14436	1827	63	5		5	SIM1	6	100911054	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	30961857	100911054	70204013	93	168185											
C6orf192	116843	broad.mit.edu	37	chr6	133118057	133118057	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actataaaataaaataattcAaaaggcttttaaaaaacaaa	2	4	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133118057	C	C	133118057	1	2	219	0	1	0	0	0	0	0	0	0	2372	145	5	5		5	C6orf192	6	133118057	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	32207003	133118057	37997010	94	168186											
SYNE1	23345	broad.mit.edu	37	chr6	152763453	152763453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtagggacatcaacacccaCgcttaacagaagtacagaaa	8	10	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152763453	A	A	152763453	1	1	219	0	1	0	0	0	0	0	0	0	15564	551	19	3		3	SYNE1	6	152763453	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	19645396	152763453	18351614	95	168187											
SYTL3	94120	broad.mit.edu	37	chr6	159147297	159147297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttcaggagtctcttgGgtaaagatcaatcattgtta	8	5	4	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159147297	T	T	159147297	1	4	219	0	1	0	0	0	0	0	0	0	15603	1247	43	2		2	SYTL3	6	159147297	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	6383844	159147297	11967770	96	168188											
CARD11	84433	broad.mit.edu	37	chr7	2952884	2952884	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcctggttcatggctccCgcggggctccccaggtggcc	14	16	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2952884	T	T	2952884	1	4	219	0	1	0	0	0	0	0	0	0	2671	667	23	4		4	CARD11	7	2952884	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08		2952884	156185779	97	168189											
ADCYAP1R1	117	broad.mit.edu	37	chr7	31144474	31144474	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcaggcttattttctctAttcccagggctttgtggtgg	10	10	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31144474	T	T	31144474	1	4	219	0	1	0	0	0	0	0	0	0	303	464	16	5		5	ADCYAP1R1	7	31144474	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	28191590	31144474	127994189	98	168190											
STAG3	10734	broad.mit.edu	37	chr7	99783948	99783948	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actgctccccctttctaattCccagccttttgttcctatgt	4	15	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99783948	A	A	99783948	1	1	219	0	1	0	0	0	0	0	0	0	15362	870	30	3		3	STAG3	7	99783948	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	68639474	99783948	59354715	99	168191											
CDHR3	222256	broad.mit.edu	37	chr7	105653270	105653270	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaacagtcgattaccattTattgggggaaatactggatt	11	5	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105653270	C	C	105653270	1	2	219	0	1	0	0	0	0	0	0	0	3150	1769	61	5		5	CDHR3	7	105653270	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	5869322	105653270	53485393	100	168192											
RBM28	55131	broad.mit.edu	37	chr7	127954875	127954875	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttcttctcttctttccatCaggcagctccacctgctcca	4	17	4	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127954875	G	G	127954875	3	3	219	1	0	0	0	0	1	0	0	0	13236	826	29	4	304	4	RBM28	7	127954875	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	22301605	127954875	31183788	101	168193											
CNOT4	4850	broad.mit.edu	37	chr7	135107156	135107156	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taaattaattaaaaaaactgCgtaagtaattatctgattct	4	4	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135107156	T	T	135107156	1	4	219	0	1	0	0	0	0	0	0	0	3653	783	27	4		4	CNOT4	7	135107156	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	7152281	135107156	24031507	102	168194											
EPHB6	2051	broad.mit.edu	37	chr7	142565878	142565878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcaggcaaggctggatcCccccaagattgggggagctc	15	11	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142565878	A	A	142565878	1	1	219	0	1	0	0	0	0	0	0	0	5220	638	22	2		2	EPHB6	7	142565878	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	7458722	142565878	16572785	103	168195											
KCNH2	3757	broad.mit.edu	37	chr7	150649985	150649985	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgggtgaggcaggccatggGacctcgggggcaggagcgat	21	8	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150649985	T	T	150649985	1	4	219	0	1	0	0	0	0	0	0	0	8102	1189	41	3		3	KCNH2	7	150649985	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	8084107	150649985	8488678	104	168196											
HTR5A	3361	broad.mit.edu	37	chr7	154876113	154876113	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggcttggctactccaaCtccttctttaaccccctgat	6	15	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154876113	T	T	154876113	2	4	219	1	0	0	0	0	0	0	0	1	7520	564	20	4		4	HTR5A	7	154876113	Silent	SNP	C	TCGA-75-6206-01A-11D-1753-08	4226128	154876113	4262550	105	168197											
CSMD1	64478	broad.mit.edu	37	chr8	3059239	3059239	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaataggcaaactgtcCaaagaccactaaaaaataag	7	8	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3059239	A	A	3059239	4	1	219	1	0	0	0	0	0	1	0	0	3978	603	21	2	5857	2	CSMD1	8	3059239	Nonsense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08		3059239	143304783	106	168198											
CSMD1	64478	broad.mit.edu	37	chr8	3565884	3565884	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttaactgctccattctctCctctgcttacaagggcgtat	6	13	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3565884	A	A	3565884	1	1	219	0	1	0	0	0	0	0	0	0	3978	870	30	3		3	CSMD1	8	3565884	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	506645	3565884	142798138	107	168199											
AMAC1L2	83650	broad.mit.edu	37	chr8	11189063	11189063	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtcctcaccctctgccttGagagccagggtctcggtggc	12	15	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11189063	C	C	11189063	3	2	219	1	0	0	0	0	1	0	0	0	560	1291	45	4	450	4	AMAC1L2	8	11189063	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	7623179	11189063	135174959	108	168200											
XPO7	23039	broad.mit.edu	37	chr8	21843107	21843107	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgcaggaaggctgacAtggctggtttacattattgg	13	8	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21843107	G	G	21843107	2	3	219	1	0	0	0	0	0	0	0	1	17576	204	8	5		5	XPO7	8	21843107	Silent	SNP	A	TCGA-75-6206-01A-11D-1753-08	10654044	21843107	124520915	109	168201											
VPS13B	157680	broad.mit.edu	37	chr8	100147266	100147266	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttatgatgggagaacctttCtttgattgccagattgggtt	11	6	1	4			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100147266	G	G	100147266	3	3	219	1	0	0	0	0	1	0	0	0	17317	912	32	4	1402	4	VPS13B	8	100147266	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	78304159	100147266	46216756	110	168202											
DCAF13	25879	broad.mit.edu	37	chr8	104453721	104453721	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagccaaggattataaccaGaaattgaaggagaaatttca	9	6	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104453721	T	T	104453721	3	4	219	1	0	0	0	0	1	0	0	0	4299	933	33	3	1619	3	DCAF13	8	104453721	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	4306455	104453721	41910301	111	168203											
CSMD3	114788	broad.mit.edu	37	chr8	113668455	113668455	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaaggtatataaaattacTgctactaaatagaaactggg	8	4	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113668455	A	A	113668455	3	1	219	1	0	0	0	0	1	0	0	0	3980	1580	55	5	8407	5	CSMD3	8	113668455	Missense_Mutation	SNP	T	TCGA-75-6206-01A-11D-1753-08	9214734	113668455	32695567	112	168204											
RFX3	5991	broad.mit.edu	37	chr9	3262923	3262923	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	taagagacatgctttgcaagGaaatagaatacctggacatt	9	6	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3262923	C	C	3262923	1	2	219	0	1	0	0	0	0	0	0	0	13372	1189	41	4		4	RFX3	9	3262923	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08		3262923	137950508	113	168205											
CCDC107	203260	broad.mit.edu	37	chr9	35660428	35660428	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaactgcggttctccacgagGaggcaagcaagcagcagcca	12	12	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35660428	C	C	35660428	3	2	219	1	0	0	0	0	1	0	0	0	2768	1175	41	4	299	4	CCDC107	9	35660428	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	32397505	35660428	105553003	114	168206											
CA9	768	broad.mit.edu	37	chr9	35679284	35679284	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgactacaccgccctgtgCccagggtgtcatctggactg	11	14	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35679284	T	T	35679284	3	4	219	1	0	0	0	0	1	0	0	0	2550	739	26	4	1036	4	CA9	9	35679284	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	18856	35679284	105534147	115	168207											
NPR2	4882	broad.mit.edu	37	chr9	35793101	35793101	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcctgggctattttagggtCatgggaggagggtcgctgtg	19	6	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35793101	T	T	35793101	1	4	219	0	1	0	0	0	0	0	0	0	10690	841	29	4		4	NPR2	9	35793101	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	113817	35793101	105420330	116	168208											
ZNF658	26149	broad.mit.edu	37	chr9	40772845	40772845	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgcactatgagggctgcCttatagacaaaagttttccc	9	9	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40772845	T	T	40772845	2	4	219	1	0	0	0	0	0	0	0	1	18196	680	24	4		4	ZNF658	9	40772845	Silent	SNP	C	TCGA-75-6206-01A-11D-1753-08	4979744	40772845	100440586	117	168209											
IARS	3376	broad.mit.edu	37	chr9	95027909	95027909	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagttaatttatatagcaTgcatgtttactttgagagac	8	5	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95027909	C	C	95027909	1	2	219	0	1	0	0	0	0	0	0	0	7543	1479	51	5		5	IARS	9	95027909	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	54255064	95027909	46185522	118	168210											
TSTD2	158427	broad.mit.edu	37	chr9	100380096	100380096	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccaggcacagatccattgGggatcctccaggtcatggta	12	11	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100380096	A	A	100380096	2	1	219	1	0	0	0	0	0	0	0	1	16801	1219	43	4		4	TSTD2	9	100380096	Silent	SNP	G	TCGA-75-6206-01A-11D-1753-08	5352187	100380096	40833335	119	168211											
ADAMTS13	11093	broad.mit.edu	37	chr9	136288387	136288387	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggatttttggtggatctgGaaggagaaggtcagagaagc	17	3	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136288387	T	T	136288387	1	4	219	0	1	0	0	0	0	0	0	0	258	1189	41	3		3	ADAMTS13	9	136288387	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	35908291	136288387	4925044	120	168212											
VAV2	7410	broad.mit.edu	37	chr9	136629334	136629334	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtagaggctcatgaagatGgggggcccttcggaagtcca	15	8	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136629334	A	A	136629334	1	1	219	0	1	0	0	0	0	0	0	0	17259	1363	47	4		4	VAV2	9	136629334	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	340947	136629334	4584097	121	168213											
SDCCAG3	10807	broad.mit.edu	37	chr9	139300516	139300516	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgtggctccagagcctcCtgataagcagagatgctggg	15	10	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139300516	A	A	139300516	1	1	219	0	1	0	0	0	0	0	0	0	14071	696	24	2		2	SDCCAG3	9	139300516	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	2671182	139300516	1912915	122	168214											
FBXO18	84893	broad.mit.edu	37	chr10	5948121	5948121	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggactctgagggtgacatGatctttcctgcagagagcag	13	9	2	4			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5948121	T	T	5948121	3	4	219	1	0	0	0	0	1	0	0	0	5788	1290	45	3	451	3	FBXO18	10	5948121	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08		5948121	129586626	123	168215											
PLXDC2	84898	broad.mit.edu	37	chr10	20357006	20357006	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataattatggggtaaagtagAagcatcatttttgttttaag	9	2	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20357006	T	T	20357006	1	4	219	0	1	0	0	0	0	0	0	0	12213	261	9	5		5	PLXDC2	10	20357006	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	14408885	20357006	115177741	124	168216											
PLXDC2	84898	broad.mit.edu	37	chr10	20357069	20357069	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgactatgctacacattattGatttttttctctggtgttgt	7	6	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20357069	A	A	20357069	1	1	219	0	1	0	0	0	0	0	0	0	12213	1305	45	4		4	PLXDC2	10	20357069	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	63	20357069	115177678	125	168217											
GAD2	2572	broad.mit.edu	37	chr10	26569913	26569913	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagggtggagtgccaccCgcttatgtgatttctttatt	11	8	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26569913	A	A	26569913	1	1	219	0	1	0	0	0	0	0	0	0	6240	667	23	1		1	GAD2	10	26569913	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	6212844	26569913	108964834	126	168218											
PCDH15	65217	broad.mit.edu	37	chr10	56138706	56138706	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccaccagaattgtacctgCaaaccaaagaaaggtacttg	8	10	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56138706	G	G	56138706	1	3	219	0	1	0	0	0	0	0	0	0	11605	725	25	4		4	PCDH15	10	56138706	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	29568793	56138706	79396041	127	168219											
CCDC6	8030	broad.mit.edu	37	chr10	61564100	61564100	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccaagatttttatacacTagaagggaacacagtcaggg	9	7	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61564100	C	C	61564100	1	2	219	0	1	0	0	0	0	0	0	0	2858	1537	53	5		5	CCDC6	10	61564100	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	5425394	61564100	73970647	128	168220											
DNAJB12	54788	broad.mit.edu	37	chr10	74104659	74104659	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggacatgctccaggaagcctCtagatttccccagtctcccc	8	16	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74104659	G	G	74104659	1	3	219	0	1	0	0	0	0	0	0	0	4657	928	32	4		4	DNAJB12	10	74104659	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	12540559	74104659	61430088	129	168221											
LIPF	8513	broad.mit.edu	37	chr10	90428413	90428413	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccttgccttcattctggcaGatgctggttatgatgtgtgg	13	8	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90428413	T	T	90428413	3	4	219	1	0	0	0	0	1	0	0	0	8895	942	33	3	332	3	LIPF	10	90428413	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	16323754	90428413	45106334	130	168222											
STAMBPL1	57559	broad.mit.edu	37	chr10	90676355	90676355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctgggggactctttaGtcttaaacatttcatttcct	7	11	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90676355	T	T	90676355	1	4	219	0	1	0	0	0	0	0	0	0	15369	1044	36	3		3	STAMBPL1	10	90676355	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	247942	90676355	44858392	131	168223											
GPR120	338557	broad.mit.edu	37	chr10	95327051	95327051	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgccgaccaggtgagcGcccctctgtgtgtgccgggc	16	16	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95327051	C	C	95327051	1	2	219	0	1	0	0	0	0	0	0	0	6701	1102	38	4		4	GPR120	10	95327051	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	4650696	95327051	40207696	132	168224											
PDCD11	22984	broad.mit.edu	37	chr10	105160290	105160290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccttagtgttgaggtttGttaaagttggttttcattta	9	3	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105160290	T	T	105160290	1	4	219	0	1	0	0	0	0	0	0	0	11711	1392	48	3		3	PDCD11	10	105160290	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	9833239	105160290	30374457	133	168225											
OR51D1	390038	broad.mit.edu	37	chr11	4661441	4661441	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accgctttgtggccatttgcCacccattgcgccatgcttct	8	15	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4661441	T	T	4661441	3	4	219	1	0	0	0	0	1	0	0	0	11187	594	21	4	423	4	OR51D1	11	4661441	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08		4661441	130345075	134	168226											
OR5J2	282775	broad.mit.edu	37	chr11	55944912	55944912	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtggaacaagagaaagtGgtttctatgttctatacgct	10	5	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55944912	A	A	55944912	2	1	219	1	0	0	0	0	0	0	0	1	11259	1335	47	4		4	OR5J2	11	55944912	Silent	SNP	G	TCGA-75-6206-01A-11D-1753-08	51283471	55944912	79061604	135	168227											
TCIRG1	10312	broad.mit.edu	37	chr11	67808820	67808820	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcctacacctgcgtgagtCggctgggcgagctgggcctc	15	14	0	1	rs139397145		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67808820	T	T	67808820	3	4	219	1	0	0	0	0	1	0	0	0	15825	875	31	4	84	4	TCIRG1	11	67808820	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	11863908	67808820	67197696	136	168228											
CAPN5	726	broad.mit.edu	37	chr11	76826529	76826529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgatgtgcgcaaggtgcGcctgggccacggcctactgg	15	13	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76826529	T	T	76826529	3	4	219	1	0	0	0	0	1	0	0	0	2655	1087	38	3	806	3	CAPN5	11	76826529	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	9017709	76826529	58179987	137	168229											
NCAM1	4684	broad.mit.edu	37	chr11	113126630	113126630	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacctaagctcgaagggcaGatgggagaggatggaaactc	15	8	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113126630	A	A	113126630	1	1	219	0	1	0	0	0	0	0	0	0	10297	933	33	4		4	NCAM1	11	113126630	5'UTR	SNP	G	TCGA-75-6206-01A-11D-1753-08	36300101	113126630	21879886	138	168230											
RBM7	10179	broad.mit.edu	37	chr11	114271281	114271281	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgagagcaagcgcaacGggcgttttcgtttgtgacgc	14	11	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114271281	C	C	114271281	1	2	219	0	1	0	0	0	0	0	0	0	13253	1131	39	4		4	RBM7	11	114271281	5'Flank	SNP	G	TCGA-75-6206-01A-11D-1753-08	1144651	114271281	20735235	139	168231											
APOA5	116519	broad.mit.edu	37	chr11	116661719	116661719	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctcgctcccactcagagGcctcagcttttccaggaact	8	16	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116661719	T	T	116661719	3	4	219	1	0	0	0	0	1	0	0	0	786	1203	42	3	878	3	APOA5	11	116661719	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	2390438	116661719	18344797	140	168232											
PCSK7	9159	broad.mit.edu	37	chr11	117094980	117094980	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgaggaacccacagaaagAcctccgcctaccacatcagt	8	14	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117094980	C	C	117094980	1	2	219	0	1	0	0	0	0	0	0	0	11699	290	10	5		5	PCSK7	11	117094980	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	433261	117094980	17911536	141	168233											
CCDC15	80071	broad.mit.edu	37	chr11	124844977	124844978	+	Intron	DNP	CC	TT	TT													gcttttgtttgctttcttccCcctttccctggcagcttagt							TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	124844978	TT	TT	124844977	1	4	219	0	1	0	0	0	0	0	0	0	2810	638	22	4		4	CCDC15	11	124844977	Intron	DNP	CC	TCGA-75-6206-01A-11D-1753-08	7749997	124844977	10161539	142	168234											
SLC37A2	219855	broad.mit.edu	37	chr11	124955384	124955384	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccataggtctgtgactctagCtctgttgtgggccggcccct	12	13	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124955384	T	T	124955384	1	4	219	0	1	0	0	0	0	0	0	0	14712	812	28	4		4	SLC37A2	11	124955384	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	110407	124955384	10051132	143	168235											
LRP6	4040	broad.mit.edu	37	chr12	12317080	12317080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaaaaaaaaaaaaaaaCttgagggtttttgttgaact	6	2	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12317080	A	A	12317080	1	1	219	0	1	0	0	0	0	0	0	0	9049	580	20	3		3	LRP6	12	12317080	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08		12317080	121534815	144	168236											
KRAS	3845	broad.mit.edu	37	chr12	25398281	25398281	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggcactcttgcctacgCcaccagctccaactaccaca	5	18	2	0	rs112445441		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25398281	T	T	25398281	3	4	219	1	0	0	0	0	1	0	0	0	8509	739	26	4	668	4	KRAS	12	25398281	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	13081201	25398281	108453614	145	168237											
ITGA5	3678	broad.mit.edu	37	chr12	54805572	54805572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccaggccttgcccccagGctgcagtcccaccccccagt	8	22	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54805572	A	A	54805572	1	1	219	0	1	0	0	0	0	0	0	0	7949	1218	42	4		4	ITGA5	12	54805572	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	29407291	54805572	79046323	146	168238											
C12orf56	115749	broad.mit.edu	37	chr12	64671706	64671706	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcattgcagaccatccttGactgaagttttggatccttg	9	9	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64671706	C	C	64671706	1	2	219	0	1	0	0	0	0	0	0	0	1713	1305	45	4		4	C12orf56	12	64671706	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	9866134	64671706	69180189	147	168239											
TPH2	121278	broad.mit.edu	37	chr12	72343491	72343491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaggaaaaacacatgctGtgttaaacaaacctgtcatc	7	8	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72343491	T	T	72343491	1	4	219	0	1	0	0	0	0	0	0	0	16526	1392	48	3		3	TPH2	12	72343491	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	7671785	72343491	61508404	148	168240											
MGAT4C	25834	broad.mit.edu	37	chr12	86373688	86373688	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacattaataaaaaatgggcCaaacgtgggagatcatgaga	10	5	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86373688	T	T	86373688	2	4	219	1	0	0	0	0	0	0	0	1	9640	593	21	4		4	MGAT4C	12	86373688	Silent	SNP	C	TCGA-75-6206-01A-11D-1753-08	14030197	86373688	47478207	149	168241											
NUAK1	9891	broad.mit.edu	37	chr12	106460869	106460869	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgacactggaagggcggCtgtagctccgggagaggccc	17	10	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106460869	A	A	106460869	3	1	219	1	0	0	0	0	1	0	0	0	10807	797	28	3	292	3	NUAK1	12	106460869	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	20087181	106460869	27391026	150	168242											
MED13L	23389	broad.mit.edu	37	chr12	116406717	116406717	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaaaggctatggttgtctTaaacaacgtactccaaatca	6	10	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116406717	A	A	116406717	1	1	219	0	1	0	0	0	0	0	0	0	9524	1769	61	5		5	MED13L	12	116406717	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	9945848	116406717	17445178	151	168243											
PITPNM2	57605	broad.mit.edu	37	chr12	123481893	123481893	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagaccagggcaaaggcgTcagagcagacgggcgggcag	19	9	1	3	rs140191385	by1000genomes	TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123481893	A	A	123481893	3	1	219	1	0	0	0	0	1	0	0	0	12046	1667	58	5	2662	5	PITPNM2	12	123481893	Missense_Mutation	SNP	T	TCGA-75-6206-01A-11D-1753-08	7075176	123481893	10370002	152	168244											
ATP6V0A2	23545	broad.mit.edu	37	chr12	124206854	124206854	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgactgaaatgtattAtagtacattttagtatctaa	6	4	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124206854	G	G	124206854	1	3	219	0	1	0	0	0	0	0	0	0	1173	464	16	5		5	ATP6V0A2	12	124206854	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08	724961	124206854	9645041	153	168245											
TMEM132B	114795	broad.mit.edu	37	chr12	126138328	126138328	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgataagtgaaccttgtcAgaagaccaagaggaagagtg	13	5	1	6			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126138328	G	G	126138328	3	3	219	1	0	0	0	0	1	0	0	0	16169	188	7	5	2343	5	TMEM132B	12	126138328	Missense_Mutation	SNP	A	TCGA-75-6206-01A-11D-1753-08	1931474	126138328	7713567	154	168246											
POLE	5426	broad.mit.edu	37	chr12	133201943	133201943	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaccttcctgtggccgaGctgtgcaactccctcttcct	8	16	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133201943	A	A	133201943	1	1	219	0	1	0	0	0	0	0	0	0	12291	986	34	4		4	POLE	12	133201943	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	7063615	133201943	649952	155	168247											
POSTN	10631	broad.mit.edu	37	chr13	38154715	38154715	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctaaagcgcttatcttgTtttaacttttcatggaggga	8	7	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38154715	C	C	38154715	2	2	219	1	0	0	0	0	0	0	0	1	12354	1722	60	5		5	POSTN	13	38154715	Silent	SNP	T	TCGA-75-6206-01A-11D-1753-08		38154715	77015163	156	168248											
PCDH9	5101	broad.mit.edu	37	chr13	67800037	67800037	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttgctcctctgagctgCtttgaaccttgatgcatggc	10	11	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67800037	T	T	67800037	3	4	219	1	0	0	0	0	1	0	0	0	11612	797	28	4	1193	4	PCDH9	13	67800037	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	29645322	67800037	47369841	157	168249											
MBIP	51562	broad.mit.edu	37	chr14	36780791	36780791	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttacctgtctgtaaccGcaagtgggcctcaatatttt	8	10	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36780791	A	A	36780791	3	1	219	1	0	0	0	0	1	0	0	0	9442	1086	38	4	272	4	MBIP	14	36780791	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08		36780791	70568749	158	168250											
MUDENG	55745	broad.mit.edu	37	chr14	57741518	57741518	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaaaccacaagtttctAtttctatcactgaaaaggta	6	7	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57741518	G	G	57741518	3	3	219	1	0	0	0	0	1	0	0	0	10077	449	16	5	637	5	MUDENG	14	57741518	Missense_Mutation	SNP	A	TCGA-75-6206-01A-11D-1753-08	20960727	57741518	49608022	159	168251											
SLC38A6	145389	broad.mit.edu	37	chr14	61486360	61486360	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaataatgtcctttgaattGttatcttactacagatctag	6	7	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61486360	T	T	61486360	1	4	219	0	1	0	0	0	0	0	0	0	14722	1392	48	3		3	SLC38A6	14	61486360	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	3744842	61486360	45863180	160	168252											
SYNE2	23224	broad.mit.edu	37	chr14	64421624	64421624	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taaaaatccccagattgctgGaaccagaaggtaaagaagct	9	8	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64421624	A	A	64421624	3	1	219	1	0	0	0	0	1	0	0	0	15565	1175	41	4	804	4	SYNE2	14	64421624	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	2935264	64421624	42927916	161	168253											
SYNE2	23224	broad.mit.edu	37	chr14	64464923	64464923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatttcgtttactattttGcatattcccttaggcaatgg	7	7	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64464923	T	T	64464923	1	4	219	0	1	0	0	0	0	0	0	0	15565	1334	46	3		3	SYNE2	14	64464923	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	43299	64464923	42884617	162	168254											
MTHFD1	4522	broad.mit.edu	37	chr14	64894286	64894286	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatgatacttatggggtcttCaactcatttcaacaccagga	7	9	4	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64894286	T	T	64894286	1	4	219	0	1	0	0	0	0	0	0	0	10021	841	29	4		4	MTHFD1	14	64894286	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	429363	64894286	42455254	163	168255											
ESRRB	2103	broad.mit.edu	37	chr14	76905617	76905617	+	Intron	DEL	G	-	-													ttcccagccaccctacctgcGgggctggacccgcccaccac							TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76905617	-	-	76905617	6	5	219	0	1	1	0	1	0	0	0	0	5303	1131	39	0		0	ESRRB	14	76905617	Intron	DEL	G	TCGA-75-6206-01A-11D-1753-08	12011331	76905617	30443923	164	168256											
TECPR2	9895	broad.mit.edu	37	chr14	102915820	102915820	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttggtcctttcacaagcGcacacgtgcacatttgtgtt	8	10	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102915820	T	T	102915820	1	4	219	0	1	0	0	0	0	0	0	0	15866	1102	38	3		3	TECPR2	14	102915820	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	26010203	102915820	4433720	165	168257											
SNRPN	6638	broad.mit.edu	37	chr15	25154941	25154941	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtatctcttaaagtagGccttattcttaacaacttta	5	8	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25154941	T	T	25154941	1	4	219	0	1	0	0	0	0	0	0	0	14984	1218	42	3		3	SNRPN	15	25154941	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08		25154941	77376451	166	168258											
RYR3	6263	broad.mit.edu	37	chr15	34123253	34123253	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttccaaagctctggcagtCaccaagcagattttcaattc	6	11	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34123253	T	T	34123253	2	4	219	1	0	0	0	0	0	0	0	1	13881	813	29	4		4	RYR3	15	34123253	Silent	SNP	C	TCGA-75-6206-01A-11D-1753-08	8968312	34123253	68408139	167	168259											
ACTC1	70	broad.mit.edu	37	chr15	35085472	35085472	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacggccagaagcatacaggGatagcactgcctggatggcc	13	11	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35085472	A	A	35085472	3	1	219	1	0	0	0	0	1	0	0	0	195	1174	41	4	725	4	ACTC1	15	35085472	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	962219	35085472	67445920	168	168260											
RFX7	64864	broad.mit.edu	37	chr15	56484637	56484637	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctgggctgaaatatggGgttctttgtatctatttcat	12	5	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56484637	A	A	56484637	1	1	219	0	1	0	0	0	0	0	0	0	13376	1247	43	4		4	RFX7	15	56484637	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	21399165	56484637	46046755	169	168261											
LIPC	3990	broad.mit.edu	37	chr15	58830872	58830872	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttccaagtgcttccccaCgcattagctcattgattatc	5	12	1	1	rs113900616		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58830872	A	A	58830872	1	1	219	0	1	0	0	0	0	0	0	0	8893	551	19	3		3	LIPC	15	58830872	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	2346235	58830872	43700520	170	168262											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84561429	84561429	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atataattttatttgtttgcTtttgagctgggaacataatc	7	4	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84561429	A	A	84561429	1	1	219	0	1	0	0	0	0	0	0	0	276	1624	56	5		5	ADAMTSL3	15	84561429	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	25730557	84561429	17969963	171	168263											
MAN2A2	4122	broad.mit.edu	37	chr15	91455886	91455886	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acctcttcctgcccgatggcGaggccaaggtatcctaaaga	10	13	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91455886	A	A	91455886	3	1	219	1	0	0	0	0	1	0	0	0	9307	1059	37	4	2519	4	MAN2A2	15	91455886	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	6894457	91455886	11075506	172	168264											
GRIN2A	2903	broad.mit.edu	37	chr16	9927798	9927798	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attggtcaggctggttctgaActcctgacctcatgatccac	9	12	3	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9927798	T	T	9927798	1	4	219	0	1	0	0	0	0	0	0	0	6845	58	2	5		5	GRIN2A	16	9927798	Intron	SNP	A	TCGA-75-6206-01A-11D-1753-08		9927798	80426955	173	168265											
NDUFAB1	4706	broad.mit.edu	37	chr16	23598679	23598679	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaacactgtcattgaatgGaaaatacctctaaatcaatg	7	7	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23598679	A	A	23598679	1	1	219	0	1	0	0	0	0	0	0	0	10368	1189	41	4		4	NDUFAB1	16	23598679	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	13670881	23598679	66756074	174	168266											
ZNF646	9726	broad.mit.edu	37	chr16	31087948	31087948	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacacatgctcctgagggCcgccgcaggcacaggccccc	13	17	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31087948	T	T	31087948	2	4	219	1	0	0	0	0	0	0	0	1	18189	726	26	4		4	ZNF646	16	31087948	Silent	SNP	C	TCGA-75-6206-01A-11D-1753-08	7489269	31087948	59266805	175	168267											
CHST6	4166	broad.mit.edu	37	chr16	75513263	75513263	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggccagggtgaaggactgcCgcgcgcacagtggcttgcac	17	12	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75513263	G	G	75513263	3	3	219	1	0	0	0	0	1	0	0	0	3439	652	23	4	727	4	CHST6	16	75513263	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	44425315	75513263	14841490	176	168268											
WWOX	51741	broad.mit.edu	37	chr16	78149127	78149127	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatctagctataatggaattTtgtttagtggttctctgatt	9	4	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78149127	C	C	78149127	1	2	219	0	1	0	0	0	0	0	0	0	17541	1856	64	5		5	WWOX	16	78149127	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	2635864	78149127	12205626	177	168269											
SRR	63826	broad.mit.edu	37	chr17	2224445	2224445	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccatacaatataacgtgcTtgagggcagggatattttat	9	6	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2224445	C	C	2224445	1	2	219	0	1	0	0	0	0	0	0	0	15284	1624	56	5		5	SRR	17	2224445	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08		2224445	78970765	178	168270											
MYH13	8735	broad.mit.edu	37	chr17	10212755	10212755	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgagatgcagctgggagtcCtgcaggggagacccagagtg	17	9	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10212755	G	G	10212755	5	3	219	1	0	0	0	0	0	0	1	0	10126	695	24	4	879	4	MYH13	17	10212755	Splice_Site	SNP	C	TCGA-75-6206-01A-11D-1753-08	7988310	10212755	70982455	179	168271											
MYH3	4621	broad.mit.edu	37	chr17	10533357	10533357	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcttcctgtggtttgatgGagaatctgcacgtcacagag	11	8	3	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10533357	T	T	10533357	1	4	219	0	1	0	0	0	0	0	0	0	10130	1189	41	3		3	MYH3	17	10533357	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	320602	10533357	70661853	180	168272											
ADORA2B	136	broad.mit.edu	37	chr17	15877995	15877995	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtattcttttaaacaggtAtaaaagtttggtcacgggga	11	4	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15877995	T	T	15877995	3	4	219	1	0	0	0	0	1	0	0	0	328	449	16	5	344	5	ADORA2B	17	15877995	Missense_Mutation	SNP	A	TCGA-75-6206-01A-11D-1753-08	5344638	15877995	65317215	181	168273											
TMEM97	27346	broad.mit.edu	37	chr17	26646231	26646231	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgcggatttggcccctcttCtcacatcagcgggtccaggc	12	15	3	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26646231	G	G	26646231	1	3	219	0	1	0	0	0	0	0	0	0	16347	928	32	4		4	TMEM97	17	26646231	5'UTR	SNP	C	TCGA-75-6206-01A-11D-1753-08	10768236	26646231	54548979	182	168274											
KRT32	3882	broad.mit.edu	37	chr17	39622235	39622235	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagaatgcagaactcaggGaaggccttaaactgccggca	11	10	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39622235	T	T	39622235	1	4	219	0	1	0	0	0	0	0	0	0	8539	1189	41	3		3	KRT32	17	39622235	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	12976004	39622235	41572975	183	168275											
KRT36	8689	broad.mit.edu	37	chr17	39645680	39645680	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgctggaaatcttcgatgGtcttgaagtaggactggtag	13	6	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39645680	C	C	39645680	3	2	219	1	0	0	0	0	1	0	0	0	8544	1261	44	4	994	4	KRT36	17	39645680	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	23445	39645680	41549530	184	168276											
UBTF	7343	broad.mit.edu	37	chr17	42287499	42287499	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccccattcctacctcatatCgcttttggtcttcggctgcc	7	16	2	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42287499	T	T	42287499	3	4	219	1	0	0	0	0	1	0	0	0	17035	884	31	4	703	4	UBTF	17	42287499	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	2641819	42287499	38907711	185	168277											
TLK2	11011	broad.mit.edu	37	chr17	60599666	60599666	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcgtatcaacaaaagtactCaattctaatgtacttagata	4	7	3	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60599666	G	G	60599666	1	3	219	0	1	0	0	0	0	0	0	0	16067	841	29	4		4	TLK2	17	60599666	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	18312167	60599666	20595544	186	168278											
SCN4A	6329	broad.mit.edu	37	chr17	62018408	62018408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgcctgcttcatggagCgctgtagcaggtgccggcgg	17	10	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62018408	A	A	62018408	3	1	219	1	0	0	0	0	1	0	0	0	14033	768	27	3	280	3	SCN4A	17	62018408	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	1418742	62018408	19176802	187	168279											
FLJ35220	284131	broad.mit.edu	37	chr17	78389003	78389003	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggacgaagccatggccctGgaggcggcgggagggccgcc	20	13	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78389003	A	A	78389003	2	1	219	1	0	0	0	0	0	0	0	1	5984	1335	47	4		4	FLJ35220	17	78389003	Silent	SNP	G	TCGA-75-6206-01A-11D-1753-08	16370595	78389003	2806207	188	168280											
PDE6G	5148	broad.mit.edu	37	chr17	79620209	79620209	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttgaacgcctttctttgGgggcttgctcttgaactgcc	10	13	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79620209	A	A	79620209	3	1	219	1	0	0	0	0	1	0	0	0	11743	1232	43	4	148	4	PDE6G	17	79620209	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	1231206	79620209	1575001	189	168281											
DSG4	147409	broad.mit.edu	37	chr18	28968847	28968847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccacagatctattgccGggctctgaattcacggggtg	11	10	3	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28968847	T	T	28968847	3	4	219	1	0	0	0	0	1	0	0	0	4819	1116	39	1	401	1	DSG4	18	28968847	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08		28968847	49108401	190	168282											
SYT4	6860	broad.mit.edu	37	chr18	40854329	40854329	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaccaggccaaatgcaCtgaagatccccaccactgtg	9	13	0	4			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40854329	A	A	40854329	3	1	219	1	0	0	0	0	1	0	0	0	15595	565	20	3	1224	3	SYT4	18	40854329	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	11885482	40854329	37222919	191	168283											
MBD1	4152	broad.mit.edu	37	chr18	47800019	47800019	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgtaaaaacacaaggtcaGtgccaggcgggggcagcaca	13	12	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47800019	C	C	47800019	3	2	219	1	0	0	0	0	1	0	0	0	9434	1029	36	4	670	4	MBD1	18	47800019	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	6945690	47800019	30277229	192	168284											
DCC	1630	broad.mit.edu	37	chr18	50278474	50278474	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcttcctctcagaaccttctGatgccgtcacaatgcgggga	10	13	3	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50278474	C	C	50278474	3	2	219	1	0	0	0	0	1	0	0	0	4315	1290	45	4	148	4	DCC	18	50278474	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	2478455	50278474	27798774	193	168285											
CDH7	1005	broad.mit.edu	37	chr18	63548113	63548113	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acatgtatgggactggccaaGagagtttgtactcatagcct	11	8	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63548113	C	C	63548113	3	2	219	1	0	0	0	0	1	0	0	0	3145	943	33	4	2383	4	CDH7	18	63548113	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	13269639	63548113	14529135	194	168286											
NETO1	81832	broad.mit.edu	37	chr18	70526114	70526114	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagattccagctctccatcaGcaaaaaatttaatccataga	4	10	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70526114	T	T	70526114	3	4	219	1	0	0	0	0	1	0	0	0	10434	971	34	3	1222	3	NETO1	18	70526114	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	6978001	70526114	7551134	195	168287											
HMHA1	23526	broad.mit.edu	37	chr19	1073755	1073755	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actcgagccaggtgagtgggGtgggccagggccacctgtgt	18	10	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1073755	C	C	1073755	1	2	219	0	1	0	0	0	0	0	0	0	7307	1276	44	4		4	HMHA1	19	1073755	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08		1073755	58055228	196	168288											
FZR1	51343	broad.mit.edu	37	chr19	3531895	3531895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaggctcacccccgcttcCacctggcctccaggggcgct	12	18	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3531895	A	A	3531895	1	1	219	0	1	0	0	0	0	0	0	0	6198	609	21	2		2	FZR1	19	3531895	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	2458140	3531895	55597088	197	168289											
KEAP1	9817	broad.mit.edu	37	chr19	10602938	10602938	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactcctcttgcttggccaCctgcagagggcgacagtggg	14	12	1	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10602938	A	A	10602938	3	1	219	1	0	0	0	0	1	0	0	0	8211	521	18	3	1250	3	KEAP1	19	10602938	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	7071043	10602938	48526045	198	168290											
ACP5	54	broad.mit.edu	37	chr19	11685955	11685955	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgagtcttcagtcccaTagtggaagcgcagatagccg	12	11	2	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11685955	C	C	11685955	3	2	219	1	0	0	0	0	1	0	0	0	164	1406	49	5	133	5	ACP5	19	11685955	Missense_Mutation	SNP	T	TCGA-75-6206-01A-11D-1753-08	1083017	11685955	47443028	199	168291											
MYO9B	4650	broad.mit.edu	37	chr19	17264757	17264757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaaaacaactattttcCtcccaattttgacctgtagg	4	12	0	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17264757	T	T	17264757	1	4	219	0	1	0	0	0	0	0	0	0	10179	696	24	4		4	MYO9B	19	17264757	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	5578802	17264757	41864226	200	168292											
MYO9B	4650	broad.mit.edu	37	chr19	17264820	17264821	+	Missense_Mutation	DNP	GA	TT	TT													tgttacttggggtcagcgagGaagagcgccaagaatttcag							TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	17264821	TT	TT	17264820	3	4	219	1	0	0	0	0	1	0	0	0	10179	1175	41	3	1056	3	MYO9B	19	17264820	Missense_Mutation	DNP	GA	TCGA-75-6206-01A-11D-1753-08	63	17264820	41864163	201	168293											
UNC13A	23025	broad.mit.edu	37	chr19	17750267	17750267	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatccgaaagaaggtgatgCtggtgagaaggtccacagtg	14	7	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17750267	T	T	17750267	3	4	219	1	0	0	0	0	1	0	0	0	17110	797	28	4	2267	4	UNC13A	19	17750267	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	485447	17750267	41378716	202	168294											
ZNF507	22847	broad.mit.edu	37	chr19	32845460	32845460	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agagggtaggcaggaattgtCagatgggcaggttaagacag	17	4	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32845460	T	T	32845460	3	4	219	1	0	0	0	0	1	0	0	0	18080	838	29	4	1726	4	ZNF507	19	32845460	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	15095193	32845460	26283523	203	168295											
CD22	933	broad.mit.edu	37	chr19	35823419	35823419	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaggctctcatgccccCttagtaatgctttctgatca	7	11	3	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35823419	T	T	35823419	1	4	219	0	1	0	0	0	0	0	0	0	3015	696	24	4		4	CD22	19	35823419	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	2977959	35823419	23305564	204	168296											
CYP2A13	1553	broad.mit.edu	37	chr19	41596176	41596176	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggggactaggtggggaaagGggcccgcacttccagccctg	17	11	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41596176	C	C	41596176	1	2	219	0	1	0	0	0	0	0	0	0	4194	1247	43	4		4	CYP2A13	19	41596176	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08	5772757	41596176	17532807	205	168297											
ZNF45	7596	broad.mit.edu	37	chr19	44419176	44419176	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctcatctttatagtgcaAatcatctcgtttttccaact	3	12	4	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44419176	G	G	44419176	2	3	219	1	0	0	0	0	0	0	0	1	18048	11	1	5		5	ZNF45	19	44419176	Silent	SNP	A	TCGA-75-6206-01A-11D-1753-08	2823000	44419176	14709807	206	168298											
ZNF28	7576	broad.mit.edu	37	chr19	53304633	53304633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaccaattttcccttcaggCtgaaatatgtgcagttcagg	8	9	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53304633	A	A	53304633	3	1	219	1	0	0	0	0	1	0	0	0	17939	796	28	3	1695	3	ZNF28	19	53304633	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	8885457	53304633	5824350	207	168299											
ZNF813	126017	broad.mit.edu	37	chr19	53995855	53995855	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacacttactcaccatcagGcaatccatggtgaaggaaac	7	12	2	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53995855	T	T	53995855	1	4	219	0	1	0	0	0	0	0	0	0	18304	1218	42	3		3	ZNF813	19	53995855	3'UTR	SNP	G	TCGA-75-6206-01A-11D-1753-08	691222	53995855	5133128	208	168300											
FCAR	2204	broad.mit.edu	37	chr19	55401054	55401054	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgacgcagaacttgatccGcatggccgtggcaggactgg	14	12	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55401054	A	A	55401054	3	1	219	1	0	0	0	0	1	0	0	0	5830	1087	38	4	778	4	FCAR	19	55401054	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	1405199	55401054	3727929	209	168301											
TGM6	343641	broad.mit.edu	37	chr20	2375042	2375042	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaatgggaggacaagctcaGagtgggtgagaaacaggagg	18	4	1	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2375042	C	C	2375042	1	2	219	0	1	0	0	0	0	0	0	0	15957	957	33	4		4	TGM6	20	2375042	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08		2375042	60650478	210	168302											
WFDC8	90199	broad.mit.edu	37	chr20	44187724	44187724	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtgaaattctctcagcccTatcctctaccttcgattctt	4	13	4	1			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44187724	A	A	44187724	1	1	219	0	1	0	0	0	0	0	0	0	17483	1537	53	5		5	WFDC8	20	44187724	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	41812682	44187724	18837796	211	168303											
MYT1	4661	broad.mit.edu	37	chr20	62868762	62868762	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaggtggtgccgcccccCgctcctgggctctttgccca	13	16	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62868762	A	A	62868762	1	1	219	0	1	0	0	0	0	0	0	0	10200	667	23	1		1	MYT1	20	62868762	Intron	SNP	C	TCGA-75-6206-01A-11D-1753-08	18681038	62868762	156758	212	168304											
PI4KA	5297	broad.mit.edu	37	chr22	21064219	21064219	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagcttgattgtctggccGcgaaaacagggcaggcccgt	14	10	1	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21064219	A	A	21064219	2	1	219	1	0	0	0	0	0	0	0	1	11968	1074	38	4		4	PI4KA	22	21064219	Silent	SNP	G	TCGA-75-6206-01A-11D-1753-08		21064219	30240347	213	168305											
TPST2	8459	broad.mit.edu	37	chr22	26936823	26936823	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggacagcgtcgctccaggcGatgccgaggaagtcgaggat	16	10	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26936823	A	A	26936823	2	1	219	1	0	0	0	0	0	0	0	1	16552	1048	37	4		4	TPST2	22	26936823	Silent	SNP	G	TCGA-75-6206-01A-11D-1753-08	5872604	26936823	24367743	214	168306											
TPST2	8459	broad.mit.edu	37	chr22	26936841	26936841	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcgatgccgaggaagtcgagGatgagcttgagtgagcgcct	17	8	0	3			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26936841	C	C	26936841	3	2	219	1	0	0	0	0	1	0	0	0	16552	1164	41	4	393	4	TPST2	22	26936841	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	18	26936841	24367725	215	168307											
C22orf42	150297	broad.mit.edu	37	chr22	32546169	32546169	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatcgaatatgatattcccTtgatattccagccaacaaaa	4	10	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32546169	C	C	32546169	1	2	219	0	1	0	0	0	0	0	0	0	2171	1624	56	5		5	C22orf42	22	32546169	Intron	SNP	T	TCGA-75-6206-01A-11D-1753-08	5609328	32546169	18758397	216	168308											
APOBEC3G	60489	broad.mit.edu	37	chr22	39482368	39482368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttttggaagctggacctgGaccaggactacagggttacc	12	11	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39482368	T	T	39482368	3	4	219	1	0	0	0	0	1	0	0	0	796	1174	41	3	842	3	APOBEC3G	22	39482368	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	6936199	39482368	11822198	217	168309											
CSF2RA	1438	broad.mit.edu	37	chrX	1414241	1414241	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcggtgcccacaccaggGgagacactgtgtgaaccatc	11	13	0	2			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1414241	T	T	1414241	1	4	219	0	1	0	0	0	0	0	0	0	3968	1247	43	2		2	CSF2RA	23	1414241	Intron	SNP	G	TCGA-75-6206-01A-11D-1753-08		1414241	153856319	218	168310											
FAM48B1	100130302	broad.mit.edu	37	chrX	24381979	24381979	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttctctgtggtaaaataCggccacgtaaaaaagccagg	10	10	1	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24381979	T	T	24381979	3	4	219	1	0	0	0	0	1	0	0	0	5624	527	19	4	1104	4	FAM48B1	23	24381979	Missense_Mutation	SNP	C	TCGA-75-6206-01A-11D-1753-08	22967738	24381979	130888581	219	168311											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912815	77912815	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagacagttcatcttgtataGaactggcaagaccttcttga	9	8	3	4			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77912815	T	T	77912815	3	4	219	1	0	0	0	0	1	0	0	0	17717	942	33	3	328	3	ZCCHC5	23	77912815	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	53530836	77912815	77357745	220	168312											
CT47B1	643311	broad.mit.edu	37	chrX	120009412	120009412	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtcgctgctgtcggggccgGagtcgccgccctcctggtta	15	14	0	0			TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120009412	C	C	120009412	3	2	219	1	0	0	0	0	1	0	0	0	4023	1174	41	4	794	4	CT47B1	23	120009412	Missense_Mutation	SNP	G	TCGA-75-6206-01A-11D-1753-08	42096597	120009412	35261148	221	168313											
CELA2B	51032	broad.mit.edu	37	chr1	15808742	15808742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggtgaccctctccctGggacccctttctcccagctc	9	18	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15808742	T	T	15808742	1	4	220	0	1	0	0	0	0	0	0	0	3242	1363	47	2		2	CELA2B	1	15808742	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08		15808742	233441879	1	168314											
MAN1C1	57134	broad.mit.edu	37	chr1	26012972	26012972	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctataagcgttatgcaatGgggaaaaacgaactccgtcc	10	9	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26012972	C	C	26012972	3	2	220	1	0	0	0	0	1	0	0	0	9305	1348	47	4	588	4	MAN1C1	1	26012972	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	10204230	26012972	223237649	2	168315											
ARID1A	8289	broad.mit.edu	37	chr1	27057727	27057727	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accagcaaagtcctcaccctCagcagcagcagccaccctac	6	19	2	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27057727	T	T	27057727	4	4	220	1	0	0	0	0	0	1	0	0	915	827	29	4	1445	4	ARID1A	1	27057727	Nonsense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	1044755	27057727	222192894	3	168316											
RPE65	6121	broad.mit.edu	37	chr1	68912489	68912489	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggctcagatccaacttcaAagagtcctggcccacatcga	8	13	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68912489	G	G	68912489	3	3	220	1	0	0	0	0	1	0	0	0	13656	14	1	5	1500	5	RPE65	1	68912489	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	41854762	68912489	180338132	4	168317											
AK5	26289	broad.mit.edu	37	chr1	77949040	77949040	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttggagaggacactatGggaggtgagttttccttact	13	5	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77949040	T	T	77949040	3	4	220	1	0	0	0	0	1	0	0	0	443	1348	47	2	1132	2	AK5	1	77949040	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	9036551	77949040	171301581	5	168318											
USP33	23032	broad.mit.edu	37	chr1	78193851	78193851	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggttctataattttatgaCtaatactcacatgcaaatac	5	8	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78193851	T	T	78193851	1	4	220	0	1	0	0	0	0	0	0	0	17191	580	20	4		4	USP33	1	78193851	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	244811	78193851	171056770	6	168319											
HFM1	164045	broad.mit.edu	37	chr1	91784627	91784627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactgcctgcctgtattcaGtacctaccaattttttccag	5	12	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91784627	T	T	91784627	1	4	220	0	1	0	0	0	0	0	0	0	7150	1044	36	3		3	HFM1	1	91784627	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	13590776	91784627	157465994	7	168320											
GCLM	2730	broad.mit.edu	37	chr1	94362109	94362109	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgcatgatgctcaacaGtgtgcagcaaagactgaaaa	10	7	1	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94362109	T	T	94362109	1	4	220	0	1	0	0	0	0	0	0	0	6358	1044	36	3		3	GCLM	1	94362109	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	2577482	94362109	154888512	8	168321											
PDE4DIP	9659	broad.mit.edu	37	chr1	145021125	145021125	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccttacctgctgtgtgactCgttctgggtaccatctcccc	8	15	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145021125	T	T	145021125	2	4	220	1	0	0	0	0	0	0	0	1	11737	871	31	4		4	PDE4DIP	1	145021125	Silent	SNP	C	TCGA-75-6207-01A-11D-1753-08	50659016	145021125	104229496	9	168322											
TARS2	80222	broad.mit.edu	37	chr1	150460568	150460568	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taactaccaggattatccttCtgcccctttactttctcttc	3	14	2	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150460568	G	G	150460568	1	3	220	0	1	0	0	0	0	0	0	0	15679	928	32	4		4	TARS2	1	150460568	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	5439443	150460568	98790053	10	168323											
SHC1	6464	broad.mit.edu	37	chr1	154942831	154942831	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggggaagaaggagcacaGggtagtgggactatcgtccc	17	9	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154942831	A	A	154942831	2	1	220	1	0	0	0	0	0	0	0	1	14383	991	35	4		4	SHC1	1	154942831	Silent	SNP	G	TCGA-75-6207-01A-11D-1753-08	4482263	154942831	94307790	11	168324											
KIAA0907	22889	broad.mit.edu	37	chr1	155891353	155891353	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caacagggtaaccagactgaTagccattggatggataatat	10	7	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155891353	C	C	155891353	3	2	220	1	0	0	0	0	1	0	0	0	8269	1406	49	5	785	5	KIAA0907	1	155891353	Missense_Mutation	SNP	T	TCGA-75-6207-01A-11D-1753-08	948522	155891353	93359268	12	168325											
OR10J5	127385	broad.mit.edu	37	chr1	159505883	159505883	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactttaaaacaaagaaaaAtgataattgtactgagactg	8	4	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159505883	G	G	159505883	1	3	220	0	1	0	0	0	0	0	0	0	11006	116	4	5		5	OR10J5	1	159505883	5'Flank	SNP	A	TCGA-75-6207-01A-11D-1753-08	3614530	159505883	89744738	13	168326											
IGSF9	57549	broad.mit.edu	37	chr1	159900162	159900162	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcactgccaccagaccccgCggaggggacaggggaggcgg	17	14	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159900162	T	T	159900162	2	4	220	1	0	0	0	0	0	0	0	1	7675	755	27	4		4	IGSF9	1	159900162	Silent	SNP	C	TCGA-75-6207-01A-11D-1753-08	394279	159900162	89350459	14	168327											
GPA33	10223	broad.mit.edu	37	chr1	167024896	167024896	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcctcacggtggtctcAgctgactttctggaccccca	8	16	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167024896	T	T	167024896	1	4	220	0	1	0	0	0	0	0	0	0	6651	203	7	5		5	GPA33	1	167024896	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08	7124734	167024896	82225725	15	168328											
F5	2153	broad.mit.edu	37	chr1	169512220	169512220	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcattttccgtgtagccatgActgtagattctggaggttca	11	8	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169512220	G	G	169512220	3	3	220	1	0	0	0	0	1	0	0	0	5391	275	10	5	4618	5	F5	1	169512220	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	2487324	169512220	79738401	16	168329											
BAT2L2	23215	broad.mit.edu	37	chr1	171510842	171510842	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgacctccaaaatttgagCgaaaatttgacccagctaga	7	10	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171510842	T	T	171510842	4	4	220	1	0	0	0	0	0	1	0	0	1326	760	27	4	4289	4	BAT2L2	1	171510842	Nonsense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	1998622	171510842	77739779	17	168330											
HMCN1	83872	broad.mit.edu	37	chr1	185897775	185897775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgcaggtactggacggGcacagacattttttgacgta	13	8	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185897775	A	A	185897775	3	1	220	1	0	0	0	0	1	0	0	0	7287	1203	42	4	1566	4	HMCN1	1	185897775	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	14386933	185897775	63352846	18	168331											
RGS2	5997	broad.mit.edu	37	chr1	192778207	192778207	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgggagaacgataatgcaAagtgctatgttcttggctgt	13	6	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192778207	T	T	192778207	3	4	220	1	0	0	0	0	1	0	0	0	13411	11	1	5	8	5	RGS2	1	192778207	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	6880432	192778207	56472414	19	168332											
KCNK2	3776	broad.mit.edu	37	chr1	215297865	215297865	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaatggaagagcaaaaTgttagagttgattctctttg	9	3	1	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215297865	A	A	215297865	1	1	220	0	1	0	0	0	0	0	0	0	8136	1479	51	5		5	KCNK2	1	215297865	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	22519658	215297865	33952756	20	168333											
DISP1	84976	broad.mit.edu	37	chr1	223178044	223178044	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catgatgatgccctccacagTtctagcttacacccagctgg	8	14	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223178044	G	G	223178044	3	3	220	1	0	0	0	0	1	0	0	0	4579	1725	60	5	3331	5	DISP1	1	223178044	Missense_Mutation	SNP	T	TCGA-75-6207-01A-11D-1753-08	7880179	223178044	26072577	21	168334											
TARBP1	6894	broad.mit.edu	37	chr1	234529356	234529356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgttgaagaccaaaagCtttcaggcaaagctcccaga	8	9	1	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234529356	T	T	234529356	1	4	220	0	1	0	0	0	0	0	0	0	15674	812	28	4		4	TARBP1	1	234529356	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	11351312	234529356	14721265	22	168335											
ERO1LB	56605	broad.mit.edu	37	chr1	236381909	236381909	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaagcttattagtaaggCtaacatgttgcatactgttt	8	5	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236381909	A	A	236381909	1	1	220	0	1	0	0	0	0	0	0	0	5282	812	28	3		3	ERO1LB	1	236381909	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	1852553	236381909	12868712	23	168336											
TPO	7173	broad.mit.edu	37	chr2	1439876	1439876	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagcacttgatgtaaagggaGaaggcagattttctcaaaaa	11	5	1	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1439876	A	A	1439876	1	1	220	0	1	0	0	0	0	0	0	0	16534	957	33	4		4	TPO	2	1439876	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08		1439876	241759497	24	168337											
ALK	238	broad.mit.edu	37	chr2	29456482	29456482	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccgcctcctgcccactcAtgcacgcttctgttcacacg	6	20	3	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29456482	G	G	29456482	2	3	220	1	0	0	0	0	0	0	0	1	525	214	8	5		5	ALK	2	29456482	Silent	SNP	A	TCGA-75-6207-01A-11D-1753-08	28016606	29456482	213742891	25	168338											
MTIF2	4528	broad.mit.edu	37	chr2	55473432	55473432	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tataatcaagtcacgaaaacCacagaacaaattaaaaaggc	5	8	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55473432	A	A	55473432	1	1	220	0	1	0	0	0	0	0	0	0	10028	609	21	2		2	MTIF2	2	55473432	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	26016950	55473432	187725941	26	168339											
GALNT13	114805	broad.mit.edu	37	chr2	155252396	155252396	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctgcatatgcaattgaAtttgctggaattatgaagaa	10	5	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155252396	C	C	155252396	1	2	220	0	1	0	0	0	0	0	0	0	6273	116	4	5		5	GALNT13	2	155252396	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08	99778964	155252396	87946977	27	168340											
XIRP2	129446	broad.mit.edu	37	chr2	168100136	168100136	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaaccattatatgttattaGagatggttcgggccaaatgc	9	7	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	168100136	C	C	168100136	3	2	220	1	0	0	0	0	1	0	0	0	17557	942	33	4	2264	4	XIRP2	2	168100136	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	12847740	168100136	75099237	28	168341											
PASK	23178	broad.mit.edu	37	chr2	242046705	242046705	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttttgacctaggaaggcaGcctggggacctcgttattcc	11	12	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242046705	A	A	242046705	1	1	220	0	1	0	0	0	0	0	0	0	11566	986	34	4		4	PASK	2	242046705	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	73946569	242046705	1152668	29	168342											
KCNH8	131096	broad.mit.edu	37	chr3	19479843	19479843	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttctccatctgcaccatGctgattggtggtaagagagc	10	10	3	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19479843	A	A	19479843	3	1	220	1	0	0	0	0	1	0	0	0	8108	1319	46	4	1395	4	KCNH8	3	19479843	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08		19479843	178542587	30	168343											
TTC21A	199223	broad.mit.edu	37	chr3	39162730	39162730	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgtcgggagccaaaccGggcagcttccatgggtccag	16	11	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39162730	A	A	39162730	1	1	220	0	1	0	0	0	0	0	0	0	16813	1131	39	4		4	TTC21A	3	39162730	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	19682887	39162730	158859700	31	168344											
ULK4	54986	broad.mit.edu	37	chr3	41497018	41497018	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaggctaatcaggtctgtCagaggtctgttgagcagcag	14	8	4	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41497018	T	T	41497018	2	4	220	1	0	0	0	0	0	0	0	1	17104	813	29	4		4	ULK4	3	41497018	Silent	SNP	C	TCGA-75-6207-01A-11D-1753-08	2334288	41497018	156525412	32	168345											
TRAIP	10293	broad.mit.edu	37	chr3	49869566	49869566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacaacagctcctgaaGcatcagagataactcagctc	8	13	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49869566	T	T	49869566	1	4	220	0	1	0	0	0	0	0	0	0	16572	986	34	3		3	TRAIP	3	49869566	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	8372548	49869566	148152864	33	168346											
CACNA1D	776	broad.mit.edu	37	chr3	53707859	53707859	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgggtaagcagtcggatcCgtgttgcaccttctcctgct	12	11	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53707859	T	T	53707859	1	4	220	0	1	0	0	0	0	0	0	0	2567	667	23	4		4	CACNA1D	3	53707859	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	3838293	53707859	144314571	34	168347											
CD86	942	broad.mit.edu	37	chr3	121825380	121825380	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagactatttctttcagCaggtattatacacaaatgct	5	9	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121825380	T	T	121825380	1	4	220	0	1	0	0	0	0	0	0	0	3073	725	25	4		4	CD86	3	121825380	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	68117521	121825380	76197050	35	168348											
SEMA5B	54437	broad.mit.edu	37	chr3	122634183	122634183	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctagcacagccctgaagtgGtttctgtcccttagtgcaaa	9	12	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122634183	C	C	122634183	1	2	220	0	1	0	0	0	0	0	0	0	14151	1276	44	4		4	SEMA5B	3	122634183	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	808803	122634183	75388247	36	168349											
KALRN	8997	broad.mit.edu	37	chr3	124045016	124045016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttccaccagaaggctgagCaggtaaggtgcagaaacctg	13	9	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124045016	A	A	124045016	3	1	220	1	0	0	0	0	1	0	0	0	8045	711	25	3	1302	3	KALRN	3	124045016	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	1410833	124045016	73977414	37	168350											
SLITRK3	22865	broad.mit.edu	37	chr3	164906262	164906262	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctaggagagcctcacccattCccggtggttgtgtccctgga	12	13	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164906262	T	T	164906262	3	4	220	1	0	0	0	0	1	0	0	0	14858	855	30	4	580	4	SLITRK3	3	164906262	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	40861246	164906262	33116168	38	168351											
SAMD7	344658	broad.mit.edu	37	chr3	169650878	169650878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatctgccatggcccatgacCccctctccccagtgctctct	6	19	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169650878	A	A	169650878	1	1	220	0	1	0	0	0	0	0	0	0	13935	638	22	2		2	SAMD7	3	169650878	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	4744616	169650878	28371552	39	168352											
LEPREL1	55214	broad.mit.edu	37	chr3	189702313	189702313	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttctcctcataaaaaaCcagtttgcattctgaatgga	6	8	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189702313	A	A	189702313	1	1	220	0	1	0	0	0	0	0	0	0	8802	522	18	3		3	LEPREL1	3	189702313	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	20051435	189702313	8320117	40	168353											
DHX15	1665	broad.mit.edu	37	chr4	24544507	24544507	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttagccattaaatgaattGgttgtaagtactgttaaacc	7	5	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24544507	A	A	24544507	1	1	220	0	1	0	0	0	0	0	0	0	4541	1363	47	4		4	DHX15	4	24544507	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08		24544507	166609769	41	168354											
SLC34A2	10568	broad.mit.edu	37	chr4	25677981	25677983	+	In_Frame_Del	DEL	CGT	-	-													ctggttggtgtcggggttccCgtcgtcttcatcatcatcct							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25677983	-	-	25677981	7	5	220	1	0	1	0	1	0	0	0	0	14682	639	23	0	1729	0	SLC34A2	4	25677981	In_Frame_Del	DEL	CGT	TCGA-75-6207-01A-11D-1753-08	1133474	25677981	165476295	42	168355											
KDR	3791	broad.mit.edu	37	chr4	55973071	55973071	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagactttggttattctgtTcttagaaataacttccaacg	6	8	3	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55973071	A	A	55973071	1	1	220	0	1	0	0	0	0	0	0	0	8209	1798	62	5		5	KDR	4	55973071	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	30295090	55973071	135181205	43	168356											
HTN1	3346	broad.mit.edu	37	chr4	70920098	70920098	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggaaaacttgataaataaAcatatattgaatttttaatc	5	4	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70920098	G	G	70920098	1	3	220	0	1	0	0	0	0	0	0	0	7504	58	2	5		5	HTN1	4	70920098	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08	14947027	70920098	120234178	44	168357											
BMPR1B	658	broad.mit.edu	37	chr4	96075720	96075720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctaaggcagatgggaaaaCtcatgacagaatgctgggct	13	7	2	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96075720	A	A	96075720	3	1	220	1	0	0	0	0	1	0	0	0	1476	565	20	3	1443	3	BMPR1B	4	96075720	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	25155622	96075720	95078556	45	168358											
ALPK1	80216	broad.mit.edu	37	chr4	113362399	113362399	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtcctttggggcttggGcagggccgtgacacaggttc	16	10	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113362399	T	T	113362399	1	4	220	0	1	0	0	0	0	0	0	0	544	1218	42	3		3	ALPK1	4	113362399	3'UTR	SNP	G	TCGA-75-6207-01A-11D-1753-08	17286679	113362399	77791877	46	168359											
TRIP13	9319	broad.mit.edu	37	chr5	914836	914837	+	Intron	DEL	GT	-	-													atgaacatgcatgtacacacGtgtgtgtgtgtgtgtgtgtg							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	914837	-	-	914836	6	5	220	0	1	1	0	1	0	0	0	0	16682	1160	40	0		0	TRIP13	5	914836	Intron	DEL	GT	TCGA-75-6207-01A-11D-1753-08		914836	180000424	47	168360											
SRD5A1	6715	broad.mit.edu	37	chr5	6663010	6663010	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatgccctggccagctggtCtgtccaaggcgcggcttttg	13	13	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6663010	T	T	6663010	3	4	220	1	0	0	0	0	1	0	0	0	15256	913	32	4	658	4	SRD5A1	5	6663010	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	5748174	6663010	174252250	48	168361											
SRD5A1	6715	broad.mit.edu	37	chr5	6663031	6663031	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccaaggcgcggcttttgCtttcttcacgttttgttttt	9	9	2	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6663031	T	T	6663031	3	4	220	1	0	0	0	0	1	0	0	0	15256	797	28	4	679	4	SRD5A1	5	6663031	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	21	6663031	174252229	49	168362											
NUP155	9631	broad.mit.edu	37	chr5	37303180	37303180	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attttagatttctcataagaGagatccacaattttagacaa	5	6	1	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37303180	C	C	37303180	1	2	220	0	1	0	0	0	0	0	0	0	10851	957	33	4		4	NUP155	5	37303180	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	30640149	37303180	143612080	50	168363											
CKMT2	1160	broad.mit.edu	37	chr5	80550291	80550292	+	Frame_Shift_Ins	INS	-	GG	GG													agggtgatgaagcacacaacINSggatctggatgcatcaaagg					rs146777847	byFrequency;by1000genomes	TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GG	80550292	GG	GG	80550291	7	5	220	1	0	1	1	0	0	0	0	0	3482	536	19	0	438	0	CKMT2	5	80550291	Frame_Shift_Ins	INS	-	TCGA-75-6207-01A-11D-1753-08	43247111	80550291	100364969	51	168364											
LIX1	167410	broad.mit.edu	37	chr5	96430380	96430380	+	3'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagatgctggagcctctgagGacctctgcactgagattcct	12	11	2	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96430380	A	A	96430380	1	1	220	0	1	0	0	0	0	0	0	0	8905	1189	41	4		4	LIX1	5	96430380	3'UTR	SNP	G	TCGA-75-6207-01A-11D-1753-08	15880089	96430380	84484880	52	168365											
FBXL17	64839	broad.mit.edu	37	chr5	107356553	107356553	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgatatagttcttgatttCtttttaagaactttcaatga	5	4	3	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107356553	A	A	107356553	1	1	220	0	1	0	0	0	0	0	0	0	5770	928	32	3		3	FBXL17	5	107356553	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	10926173	107356553	73558707	53	168366											
AFF4	27125	broad.mit.edu	37	chr5	132269967	132269967	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctttggttccatggactCctgtccgtccatgggccgca	11	14	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132269967	T	T	132269967	3	4	220	1	0	0	0	0	1	0	0	0	359	864	30	4	2777	4	AFF4	5	132269967	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	24913414	132269967	48645293	54	168367											
PCDHB4	56131	broad.mit.edu	37	chr5	140502489	140502489	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acgggagaaatactgttgaaAaaaaaattggatttcgaaaa	9	3	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140502489	G	G	140502489	2	3	220	1	0	0	0	0	0	0	0	1	11638	11	1	5		5	PCDHB4	5	140502489	Silent	SNP	A	TCGA-75-6207-01A-11D-1753-08	8232522	140502489	40412771	55	168368											
GABRA1	2554	broad.mit.edu	37	chr5	161324267	161324267	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaagaggtcaagcccgaaAcaaaaccaccagaacccaag	7	13	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161324267	G	G	161324267	3	3	220	1	0	0	0	0	1	0	0	0	6220	43	2	5	1244	5	GABRA1	5	161324267	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	20821778	161324267	19590993	56	168369											
TRIM27	5987	broad.mit.edu	37	chr6	28879522	28879522	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaggaaaaaaaataacCatgagaagtcatttaaaact	7	4	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28879522	A	A	28879522	1	1	220	0	1	0	0	0	0	0	0	0	16625	609	21	2		2	TRIM27	6	28879522	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08		28879522	142235545	57	168370											
HLA-DMA	3108	broad.mit.edu	37	chr6	32918372	32918372	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcagaactctttgtcaaaTaaaatggcaggagcatctcc	8	10	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32918372	C	C	32918372	2	2	220	1	0	0	0	0	0	0	0	1	7265	1403	49	5		5	HLA-DMA	6	32918372	Silent	SNP	T	TCGA-75-6207-01A-11D-1753-08	4038850	32918372	138196695	58	168371											
ITPR3	3710	broad.mit.edu	37	chr6	33650241	33650241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgggccctggttcctggaCctggggttgcccagggtggg	18	10	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33650241	A	A	33650241	1	1	220	0	1	0	0	0	0	0	0	0	7992	522	18	3		3	ITPR3	6	33650241	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	731869	33650241	137464826	59	168372											
PTK7	5754	broad.mit.edu	37	chr6	43112864	43112865	+	Intron	INS	-	A	A													tccccactgtgggagaggctINSaggcccctcccccaggtcag					rs147906027	by1000genomes	TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43112865	A	A	43112864	6	5	220	0	1	1	1	0	0	0	0	0	12871	1537	53	0		0	PTK7	6	43112864	Intron	INS	-	TCGA-75-6207-01A-11D-1753-08	9462623	43112864	128002203	60	168373											
LIN28B	389421	broad.mit.edu	37	chr6	105405964	105405969	+	Intron	DEL	TCCTTC	-	-													gactgacttttttgtcctgtTccttctcaggcggggctagc							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105405969	-	-	105405964	6	5	220	0	1	1	0	1	0	0	0	0	8879	1798	62	0		0	LIN28B	6	105405964	Intron	DEL	TCCTTC	TCGA-75-6207-01A-11D-1753-08	62293100	105405964	65709103	61	168374											
DSE	29940	broad.mit.edu	37	chr6	116757414	116757414	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ataatgtggatgttccttttGaggagactgtggtagatggt	14	3	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116757414	T	T	116757414	4	4	220	1	0	0	0	0	0	1	0	0	4814	1291	45	3	1801	3	DSE	6	116757414	Nonsense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	11351450	116757414	54357653	62	168375											
SHPRH	257218	broad.mit.edu	37	chr6	146275957	146275957	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acccttgtcacaaatactcaTcggttcttttttttgtttct	4	10	4	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146275957	C	C	146275957	3	2	220	1	0	0	0	0	1	0	0	0	14404	1435	50	5	4709	5	SHPRH	6	146275957	Missense_Mutation	SNP	T	TCGA-75-6207-01A-11D-1753-08	29518543	146275957	24839110	63	168376											
SYNE1	23345	broad.mit.edu	37	chr6	152510398	152510398	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatcttacctggtggcataGttcttcccactgcctttgca	7	12	2	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152510398	A	A	152510398	2	1	220	1	0	0	0	0	0	0	0	1	15564	1020	36	4		4	SYNE1	6	152510398	Silent	SNP	G	TCGA-75-6207-01A-11D-1753-08	6234441	152510398	18604669	64	168377											
WTAP	9589	broad.mit.edu	37	chr6	160169299	160169299	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaatggtagacccagcgaTcaacttgtttttcctaaaaa	6	9	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160169299	A	A	160169299	3	1	220	1	0	0	0	0	1	0	0	0	17536	1435	50	5	368	5	WTAP	6	160169299	Missense_Mutation	SNP	T	TCGA-75-6207-01A-11D-1753-08	7658901	160169299	10945768	65	168378											
AIMP2	7965	broad.mit.edu	37	chr7	6063224	6063224	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtactccagcagatcGgaggctgcagtgtgacagtg	15	9	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6063224	T	T	6063224	4	4	220	1	0	0	0	0	0	1	0	0	434	1117	39	1	879	1	AIMP2	7	6063224	Nonsense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08		6063224	153075439	66	168379											
AEBP1	165	broad.mit.edu	37	chr7	44150680	44150680	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggagggctggcagggGctctgagtggaggtggggtg	24	4	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44150680	T	T	44150680	1	4	220	0	1	0	0	0	0	0	0	0	349	1218	42	3		3	AEBP1	7	44150680	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	38087456	44150680	114987983	67	168380											
OGDH	4967	broad.mit.edu	37	chr7	44733543	44733543	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccccgaggctgtcatgtaCgtgtgcaaagtggcggccga	15	11	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44733543	T	T	44733543	2	4	220	1	0	0	0	0	0	0	0	1	10934	547	19	4		4	OGDH	7	44733543	Silent	SNP	C	TCGA-75-6207-01A-11D-1753-08	582863	44733543	114405120	68	168381											
EGFR	1956	broad.mit.edu	37	chr7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-													aaaattcccgtcgctatcaaGgaattaagagaagcaacatc					rs121913421		TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242479	-	-	55242465	7	5	220	1	0	1	0	1	0	0	0	0	5007	991	35	0	2573	0	EGFR	7	55242465	In_Frame_Del	DEL	GGAATTAAGAGAAGC	TCGA-75-6207-01A-11D-1753-08	10508922	55242465	103896198	69	168382											
PCLO	27445	broad.mit.edu	37	chr7	82544173	82544173	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtggcaggggtccagctgCagccctggccattcccattg	14	13	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82544173	T	T	82544173	3	4	220	1	0	0	0	0	1	0	0	0	11677	710	25	4	2392	4	PCLO	7	82544173	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	27301708	82544173	76594490	70	168383											
ADAM22	53616	broad.mit.edu	37	chr7	87774579	87774579	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attccaggtccacacactgaGatgtatggagcaaatgtcat	9	9	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87774579	A	A	87774579	1	1	220	0	1	0	0	0	0	0	0	0	244	957	33	4		4	ADAM22	7	87774579	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	5230406	87774579	71364084	71	168384											
BAIAP2L1	55971	broad.mit.edu	37	chr7	97949602	97949602	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtacttgaaatctctatgaGgacatgtcctgggaacaaaa	10	7	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97949602	C	C	97949602	3	2	220	1	0	0	0	0	1	0	0	0	1307	1000	35	4	1356	4	BAIAP2L1	7	97949602	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	10175023	97949602	61189061	72	168385											
SMURF1	57154	broad.mit.edu	37	chr7	98630574	98630574	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttggcagagactccatctCaaaaaaaaacaacaaaaaaa	4	8	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98630574	A	A	98630574	1	1	220	0	1	0	0	0	0	0	0	0	14933	841	29	3		3	SMURF1	7	98630574	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	680972	98630574	60508089	73	168386											
EMID2	136227	broad.mit.edu	37	chr7	101200875	101200875	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagaggcctgagccgccgCtgtttcctaaagatgccccc	10	17	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101200875	T	T	101200875	1	4	220	0	1	0	0	0	0	0	0	0	5134	812	28	4		4	EMID2	7	101200875	3'UTR	SNP	C	TCGA-75-6207-01A-11D-1753-08	2570301	101200875	57937788	74	168387											
NRCAM	4897	broad.mit.edu	37	chr7	107832165	107832165	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgtgctatttttgttttcGttcttaccaacaacgctaag	7	8	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107832165	A	A	107832165	1	1	220	0	1	0	0	0	0	0	0	0	10739	1160	40	4		4	NRCAM	7	107832165	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	6631290	107832165	51306498	75	168388											
DLGAP2	9228	broad.mit.edu	37	chr8	1497387	1497387	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaaaagcaacgccaacggCaccaaggcggacggccgggc	13	15	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1497387	A	A	1497387	2	1	220	1	0	0	0	0	0	0	0	1	4600	697	25	3		3	DLGAP2	8	1497387	Silent	SNP	C	TCGA-75-6207-01A-11D-1753-08		1497387	144866635	76	168389											
MYOM2	9172	broad.mit.edu	37	chr8	2056640	2056640	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtaagtaagcctccagccCttcccctctgcttgcagctg	8	16	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2056640	T	T	2056640	1	4	220	0	1	0	0	0	0	0	0	0	10186	696	24	4		4	MYOM2	8	2056640	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	559253	2056640	144307382	77	168390											
CSMD1	64478	broad.mit.edu	37	chr8	3165139	3165139	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actttaaccatggatatttgGtgtaccactatctctgctac	6	10	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3165139	T	T	3165139	1	4	220	0	1	0	0	0	0	0	0	0	3978	1276	44	3		3	CSMD1	8	3165139	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	1108499	3165139	143198883	78	168391											
SNAI2	6591	broad.mit.edu	37	chr8	49832627	49832627	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gattttctagactgggcatcGcagtgcagctgcttatgttt	11	8	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49832627	A	A	49832627	2	1	220	1	0	0	0	0	0	0	0	1	14941	1079	38	4		4	SNAI2	8	49832627	Silent	SNP	G	TCGA-75-6207-01A-11D-1753-08	46667488	49832627	96531395	79	168392											
NPBWR1	2831	broad.mit.edu	37	chr8	53852850	53852850	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagcctctacttcctcaCcgtcatgagcgccgaccgct	7	19	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53852850	T	T	53852850	3	4	220	1	0	0	0	0	1	0	0	0	10663	507	18	4	385	4	NPBWR1	8	53852850	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	4020223	53852850	92511172	80	168393											
TCEA1	6917	broad.mit.edu	37	chr8	54885965	54885966	+	Intron	DNP	CT	GC	GC													aaagaaaaagaagactcttgCtaaagaggccagtgaaaatt							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	54885966	GC	GC	54885965	1	3	220	0	1	0	0	0	0	0	0	0	15789	812	28	4		4	TCEA1	8	54885965	Intron	DNP	CT	TCGA-75-6207-01A-11D-1753-08	1033115	54885965	91478057	81	168394											
PREX2	80243	broad.mit.edu	37	chr8	68931805	68931805	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgttctcaaacattgaaGacatccttgcagtacataaa	6	8	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68931805	C	C	68931805	3	2	220	1	0	0	0	0	1	0	0	0	12583	942	33	4	245	4	PREX2	8	68931805	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	14045840	68931805	77432217	82	168395											
KCNB2	9312	broad.mit.edu	37	chr8	73849192	73849192	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctccagcccacagcaTctgagtgcccagaaactgga	8	15	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73849192	C	C	73849192	2	2	220	1	0	0	0	0	0	0	0	1	8083	1432	50	5		5	KCNB2	8	73849192	Silent	SNP	T	TCGA-75-6207-01A-11D-1753-08	4917387	73849192	72514830	83	168396											
DCAF13	25879	broad.mit.edu	37	chr8	104442853	104442853	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tttttagacatttctcttggGaagttgtgcatctgacagga	10	6	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104442853	A	A	104442853	3	1	220	1	0	0	0	0	1	0	0	0	4299	1174	41	4	1116	4	DCAF13	8	104442853	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	30593661	104442853	41921169	84	168397											
CYP11B2	1585	broad.mit.edu	37	chr8	143999137	143999137	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctggatgctggggcatGgcttcaaacggcagcaccgt	14	11	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143999137	T	T	143999137	2	4	220	1	0	0	0	0	0	0	0	1	4179	1335	47	2		2	CYP11B2	8	143999137	Silent	SNP	G	TCGA-75-6207-01A-11D-1753-08	39556284	143999137	2364885	85	168398											
CPSF1	29894	broad.mit.edu	37	chr8	145626466	145626466	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtacattctgcacaaaccCgtcctgggggcagagggggc	15	11	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145626466	T	T	145626466	3	4	220	1	0	0	0	0	1	0	0	0	3856	652	23	4	4072	4	CPSF1	8	145626466	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	1627329	145626466	737556	86	168399											
C8orf33	65265	broad.mit.edu	37	chr8	146279562	146279562	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgtctccccgaacctgaaAcaatccccctcccttggggt	8	17	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146279562	G	G	146279562	1	3	220	0	1	0	0	0	0	0	0	0	2447	58	2	5		5	C8orf33	8	146279562	3'UTR	SNP	A	TCGA-75-6207-01A-11D-1753-08	653096	146279562	84460	87	168400											
JAK2	3717	broad.mit.edu	37	chr9	5078538	5078538	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttccttgaattccatttaAtttgtatgttcctgattaat	4	6	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5078538	T	T	5078538	1	4	220	0	1	0	0	0	0	0	0	0	8008	116	4	5		5	JAK2	9	5078538	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08		5078538	136134893	88	168401											
RLN1	6013	broad.mit.edu	37	chr9	5335488	5335488	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtagctctggtaatgaTggttgcctctcagatagggc	13	8	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5335488	A	A	5335488	2	1	220	1	0	0	0	0	0	0	0	1	13502	1451	51	5		5	RLN1	9	5335488	Silent	SNP	T	TCGA-75-6207-01A-11D-1753-08	256950	5335488	135877943	89	168402											
KIAA2026	158358	broad.mit.edu	37	chr9	6007361	6007361	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gccgctggcgaacttctcttCcatctgcagcagacacatgc	9	15	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6007361	G	G	6007361	3	3	220	1	0	0	0	0	1	0	0	0	8340	864	30	4	5916	4	KIAA2026	9	6007361	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	671873	6007361	135206070	90	168403			1	136		3	3	253	C		9.416969e-07
KIAA2026	158358	broad.mit.edu	37	chr9	6007387	6007387	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagcagacacatgccctgtCcgggctgctgcgggaaggcg	16	13	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6007387	T	T	6007387	3	4	220	1	0	0	0	0	1	0	0	0	8340	855	30	4	5942	4	KIAA2026	9	6007387	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	26	6007387	135206044	91	168404			1	136		3	3	253	C		9.416969e-07
KIAA2026	158358	broad.mit.edu	37	chr9	6007613	6007613	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gatcaccatcgcctccatctCttcctcctgatcgtccgcgt	6	18	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6007613	G	G	6007613	3	3	220	1	0	0	0	0	1	0	0	0	8340	922	32	4	6168	4	KIAA2026	9	6007613	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	226	6007613	135205818	92	168405			1	136		3	3	253	C		9.416969e-07
KDM4C	23081	broad.mit.edu	37	chr9	6984007	6984007	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtttaagattttgatttCaaatttaatcattcagttgt	6	3	3	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6984007	G	G	6984007	1	3	220	0	1	0	0	0	0	0	0	0	8200	841	29	4		4	KDM4C	9	6984007	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	976394	6984007	134229424	93	168406											
UBAP2	55833	broad.mit.edu	37	chr9	33998823	33998823	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaatctgaatcattcttatCaaagatcacttgagcgagac	6	8	5	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33998823	T	T	33998823	3	4	220	1	0	0	0	0	1	0	0	0	16963	826	29	4	3328	4	UBAP2	9	33998823	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	27014816	33998823	107214608	94	168407											
OR2S2	56656	broad.mit.edu	37	chr9	35957732	35957732	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagatggccacatagcgatCaaatgccatcatgctcagga	10	11	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35957732	G	G	35957732	3	3	220	1	0	0	0	0	1	0	0	0	11109	826	29	4	599	4	OR2S2	9	35957732	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	1958909	35957732	105255699	95	168408											
OR2S2	56656	broad.mit.edu	37	chr9	35958141	35958141	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtactgagcagcgcatcagGctttttgggaagagtcctag	13	8	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35958141	T	T	35958141	1	4	220	0	1	0	0	0	0	0	0	0	11109	1218	42	3		3	OR2S2	9	35958141	5'UTR	SNP	G	TCGA-75-6207-01A-11D-1753-08	409	35958141	105255290	96	168409											
EXD3	54932	broad.mit.edu	37	chr9	140262334	140262334	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaacactgtttatagagaCctgggcgttatccaagtttg	9	8	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140262334	T	T	140262334	1	4	220	0	1	0	0	0	0	0	0	0	5341	522	18	4		4	EXD3	9	140262334	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	104304193	140262334	951097	97	168410											
ZDHHC16	84287	broad.mit.edu	37	chr10	99214597	99214597	+	Intron	DEL	A	-	-													taagggaggggaagcttcagAaaaaaagttttttaggtgcc							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99214597	-	-	99214597	6	5	220	0	1	1	0	1	0	0	0	0	17732	261	9	0		0	ZDHHC16	10	99214597	Intron	DEL	A	TCGA-75-6207-01A-11D-1753-08		99214597	36320150	98	168411											
GOT1	2805	broad.mit.edu	37	chr10	101165834	101165834	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cacttagcaactggtccaaaGactttgcctgagattcctga	8	11	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101165834	C	C	101165834	1	2	220	0	1	0	0	0	0	0	0	0	6643	957	33	4		4	GOT1	10	101165834	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	1951237	101165834	34368913	99	168412											
PKD2L1	9033	broad.mit.edu	37	chr10	102048831	102048831	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgttggaagaagaaagGgacaaatcatttgaagaaat	10	4	2	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102048831	T	T	102048831	1	4	220	0	1	0	0	0	0	0	0	0	12062	1247	43	2		2	PKD2L1	10	102048831	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	882997	102048831	33485916	100	168413											
SCD	6319	broad.mit.edu	37	chr10	102107729	102107729	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcggaagggtccgtactgtCcacccttcccccagcgtgat	11	15	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102107729	T	T	102107729	1	4	220	0	1	0	0	0	0	0	0	0	13998	870	30	4		4	SCD	10	102107729	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	58898	102107729	33427018	101	168414											
GBF1	8729	broad.mit.edu	37	chr10	104136274	104136274	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcaaggacattcacacAggggccaagcctgtgtcccc	10	15	2	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104136274	G	G	104136274	1	3	220	0	1	0	0	0	0	0	0	0	6333	203	7	5		5	GBF1	10	104136274	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08	2028545	104136274	31398473	102	168415											
NPS	594857	broad.mit.edu	37	chr10	129350615	129350615	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacttctgcctttaagatgAttgatatattggatttatcg	7	5	1	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129350615	G	G	129350615	1	3	220	0	1	0	0	0	0	0	0	0	10694	348	12	5		5	NPS	10	129350615	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08	25214341	129350615	6184132	103	168416											
OR51F1	256892	broad.mit.edu	37	chr11	4790747	4790747	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aattagtgagaatggtagtgTacctcagagggtcacagatg	13	5	2	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4790747	C	C	4790747	3	2	220	1	0	0	0	0	1	0	0	0	11190	1638	57	5	540	5	OR51F1	11	4790747	Missense_Mutation	SNP	T	TCGA-75-6207-01A-11D-1753-08		4790747	130215769	104	168417											
PRMT3	10196	broad.mit.edu	37	chr11	20429590	20429590	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tattataaggtacatatattTtaagccttcatttaagatta	4	4	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20429590	C	C	20429590	1	2	220	0	1	0	0	0	0	0	0	0	12644	1856	64	5		5	PRMT3	11	20429590	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	15638843	20429590	114576926	105	168418											
AIP	9049	broad.mit.edu	37	chr11	67258201	67258201	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagacatgagggcaggcagcTggccaggatcccccctcatg	14	13	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67258201	A	A	67258201	1	1	220	0	1	0	0	0	0	0	0	0	435	1595	55	5		5	AIP	11	67258201	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	46828611	67258201	67748315	106	168419											
MYO7A	4647	broad.mit.edu	37	chr11	76872171	76872171	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgaacaggtaccgcgtGgggctctgctcatgggaatt	15	9	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76872171	T	T	76872171	1	4	220	0	1	0	0	0	0	0	0	0	10176	1363	47	2		2	MYO7A	11	76872171	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	9613970	76872171	58134345	107	168420											
CCDC67	159989	broad.mit.edu	37	chr11	93090193	93090193	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattatgaaggacaactacAaagcctaaaggctcaagtaa	8	7	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93090193	G	G	93090193	3	3	220	1	0	0	0	0	1	0	0	0	2867	130	5	5	291	5	CCDC67	11	93090193	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	16218022	93090193	41916323	108	168421											
HEPHL1	341208	broad.mit.edu	37	chr11	93779059	93779059	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actctctgcatccacatggcGttttctacaacaaagattca	5	12	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93779059	A	A	93779059	3	1	220	1	0	0	0	0	1	0	0	0	7122	1145	40	4	397	4	HEPHL1	11	93779059	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	688866	93779059	41227457	109	168422											
ADIPOR2	79602	broad.mit.edu	37	chr12	1866748	1866748	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgagggaatcagggtagcGgatggtgccgggcatcatga	18	6	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1866748	A	A	1866748	1	1	220	0	1	0	0	0	0	0	0	0	319	1131	39	4		4	ADIPOR2	12	1866748	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08		1866748	131985147	110	168423											
WBP11	51729	broad.mit.edu	37	chr12	14943683	14943683	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcagggatttcttgaCctgaaagaaattttaaaccc	6	11	2	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14943683	A	A	14943683	3	1	220	1	0	0	0	0	1	0	0	0	17385	521	18	3	921	3	WBP11	12	14943683	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	13076935	14943683	118908212	111	168424											
PDE3A	5139	broad.mit.edu	37	chr12	20783080	20783081	+	Intron	DNP	CT	TA	TA													aggtaaggattttttatgaaCtgaagtttaataataaaaac							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	20783081	TA	TA	20783080	1	4	220	0	1	0	0	0	0	0	0	0	11731	580	20	4		4	PDE3A	12	20783080	Intron	DNP	CT	TCGA-75-6207-01A-11D-1753-08	5839397	20783080	113068815	112	168425											
SLCO1B1	10599	broad.mit.edu	37	chr12	21331753	21331753	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attattttacctattagaacAtatatttgggtatatgtatt	5	3	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21331753	G	G	21331753	1	3	220	0	1	0	0	0	0	0	0	0	14837	232	8	5		5	SLCO1B1	12	21331753	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08	548673	21331753	112520142	113	168426											
C12orf39	80763	broad.mit.edu	37	chr12	21680145	21680145	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtaagttccaaatatttcGctcttcctacaataatggaa	5	9	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21680145	A	A	21680145	1	1	220	0	1	0	0	0	0	0	0	0	1697	1102	38	4		4	C12orf39	12	21680145	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	348392	21680145	112171750	114	168427											
ANO6	196527	broad.mit.edu	37	chr12	45740683	45740683	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatttgcttgaccaaatgcTgatgcatttctttttcaggt	7	9	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45740683	G	G	45740683	1	3	220	0	1	0	0	0	0	0	0	0	701	1595	55	5		5	ANO6	12	45740683	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	24060538	45740683	88111212	115	168428											
TENC1	23371	broad.mit.edu	37	chr12	53455027	53455027	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttcgcacctctgctctcaGataatgtcccccaaacccca	4	19	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53455027	C	C	53455027	3	2	220	1	0	0	0	0	1	0	0	0	15880	942	33	4	3524	4	TENC1	12	53455027	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	7714344	53455027	80396868	116	168429											
MGAT4C	25834	broad.mit.edu	37	chr12	86373716	86373716	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagatcatgagaatgatagAgtttaccaatgtagccaagc	11	6	1	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86373716	T	T	86373716	3	4	220	1	0	0	0	0	1	0	0	0	9640	304	11	5	652	5	MGAT4C	12	86373716	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	32918689	86373716	47478179	117	168430											
B3GNT4	79369	broad.mit.edu	37	chr12	122690776	122690776	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagaggccagcagggactTagcggctggggtgcaggtta	17	9	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122690776	A	A	122690776	1	1	220	0	1	0	0	0	0	0	0	0	1264	1769	61	5		5	B3GNT4	12	122690776	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	36317060	122690776	11161119	118	168431											
FAM124A	220108	broad.mit.edu	37	chr13	51855250	51855250	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcgtgctgctcccccagCtcccagcacctccaccctca	6	22	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51855250	A	A	51855250	3	1	220	1	0	0	0	0	1	0	0	0	5471	797	28	3	1625	3	FAM124A	13	51855250	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08		51855250	63314628	119	168432											
LRFN5	145581	broad.mit.edu	37	chr14	42356002	42356002	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactgtggaactgcggttGgcagacaattttgttacaaa	11	6	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42356002	T	T	42356002	3	4	220	1	0	0	0	0	1	0	0	0	9028	1339	47	2	176	2	LRFN5	14	42356002	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08		42356002	64993538	120	168433											
PLEKHH1	57475	broad.mit.edu	37	chr14	68042651	68042651	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagacggttgctttcctccCactgcaccctggtgatccac	8	17	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68042651	T	T	68042651	3	4	220	1	0	0	0	0	1	0	0	0	12171	594	21	4	2339	4	PLEKHH1	14	68042651	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	25686649	68042651	39306889	121	168434											
SNW1	22938	broad.mit.edu	37	chr14	78217554	78217554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacgagccaccatgcccagCcactgctacttttaacataa	6	14	0	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78217554	A	A	78217554	1	1	220	0	1	0	0	0	0	0	0	0	14993	754	26	3		3	SNW1	14	78217554	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	10174903	78217554	29131986	122	168435											
SPATA7	55812	broad.mit.edu	37	chr14	88904759	88904759	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgaggactgccctttggAtgtttaatcttcattaataa	7	7	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88904759	C	C	88904759	3	2	220	1	0	0	0	0	1	0	0	0	15130	333	12	5	1839	5	SPATA7	14	88904759	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	10687205	88904759	18444781	123	168436											
KIF26A	26153	broad.mit.edu	37	chr14	104642531	104642531	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcagccccgcttcagccccGactcgctggcagggcttgac	12	18	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104642531	A	A	104642531	3	1	220	1	0	0	0	0	1	0	0	0	8364	1058	37	4	3452	4	KIF26A	14	104642531	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	15737772	104642531	2707009	124	168437											
AHNAK2	113146	broad.mit.edu	37	chr14	105414090	105414090	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcatctgcaccttgggCaggtgccctttgaggccggc	15	13	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105414090	A	A	105414090	2	1	220	1	0	0	0	0	0	0	0	1	415	697	25	3		3	AHNAK2	14	105414090	Silent	SNP	C	TCGA-75-6207-01A-11D-1753-08	771559	105414090	1935450	125	168438											
ZNF770	54989	broad.mit.edu	37	chr15	35274619	35274619	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcacgcttaagcttggccaaGatttttttaacaatggtttt	8	7	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35274619	T	T	35274619	2	4	220	1	0	0	0	0	0	0	0	1	18272	932	33	3		3	ZNF770	15	35274619	Silent	SNP	G	TCGA-75-6207-01A-11D-1753-08		35274619	67256773	126	168439											
CASC5	57082	broad.mit.edu	37	chr15	40949530	40949531	+	Intron	INS	-	T	T													gttttcataatttcactggaINSttttttttcccactttttct							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40949531	T	T	40949530	6	5	220	0	1	1	1	0	0	0	0	0	2689	348	12	0		0	CASC5	15	40949530	Intron	INS	-	TCGA-75-6207-01A-11D-1753-08	5674911	40949530	61581862	127	168440											
GCOM1	145781	broad.mit.edu	37	chr15	57924544	57924544	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgggctcactacctctGtgagtccccacatgaaatgt	10	11	2	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57924544	T	T	57924544	1	4	220	0	1	0	0	0	0	0	0	0	6367	1392	48	3		3	GCOM1	15	57924544	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	16975014	57924544	44606848	128	168441											
SGK269	79834	broad.mit.edu	37	chr15	77425627	77425627	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctgcggcttctggatgcctCggccctgtctgcaagagggc	14	13	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77425627	A	A	77425627	3	1	220	1	0	0	0	0	1	0	0	0	14324	884	31	3	1451	3	SGK269	15	77425627	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	19501083	77425627	25105765	129	168442											
ABCC6	368	broad.mit.edu	37	chr16	16267125	16267125	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgggtggggaggggtgggTgaagctggtggttaccctgc	22	5	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16267125	G	G	16267125	1	3	220	0	1	0	0	0	0	0	0	0	57	1711	59	5		5	ABCC6	16	16267125	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08		16267125	74087628	130	168443											
GP2	2813	broad.mit.edu	37	chr16	20327347	20327347	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cggtacttcactgcggacttGacttcttgagcaagactgta	10	10	2	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20327347	T	T	20327347	3	4	220	1	0	0	0	0	1	0	0	0	6647	1299	45	3	184	3	GP2	16	20327347	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	4060222	20327347	70027406	131	168444											
TMEM159	57146	broad.mit.edu	37	chr16	21172524	21172524	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atggcaaaagaggagccccaGagtatctcaagggacttgca	12	9	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21172524	C	C	21172524	3	2	220	1	0	0	0	0	1	0	0	0	16197	933	33	4	23	4	TMEM159	16	21172524	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	845177	21172524	69182229	132	168445											
MT1B	4490	broad.mit.edu	37	chr16	56683331	56683331	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcactctccccttcttcCcagactgctgctcctgctac	4	20	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56683331	T	T	56683331	1	4	220	0	1	0	0	0	0	0	0	0	9992	638	22	4		4	MT1B	16	56683331	5'Flank	SNP	C	TCGA-75-6207-01A-11D-1753-08	35510807	56683331	33671422	133	168446											
FHOD1	29109	broad.mit.edu	37	chr16	67271484	67271484	+	Intron	DEL	A	-	-													gaggagcacctgccacacagAaagtggagcagtcatggggg							TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67271484	-	-	67271484	6	5	220	0	1	1	0	1	0	0	0	0	5939	261	9	0		0	FHOD1	16	67271484	Intron	DEL	A	TCGA-75-6207-01A-11D-1753-08	10588153	67271484	23083269	134	168447											
ADAMTS18	170692	broad.mit.edu	37	chr16	77354894	77354894	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtgaactagtaaaaggctCaaccacatttggcgtgactc	9	10	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77354894	G	G	77354894	1	3	220	0	1	0	0	0	0	0	0	0	263	841	29	4		4	ADAMTS18	16	77354894	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	10083410	77354894	12999859	135	168448											
DPEP1	1800	broad.mit.edu	37	chr16	89703804	89703804	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtgagggccgaggggGcgacctccaccccgcctccc	16	16	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89703804	A	A	89703804	1	1	220	0	1	0	0	0	0	0	0	0	4753	1218	42	4		4	DPEP1	16	89703804	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	12348910	89703804	650949	136	168449											
PLD2	5338	broad.mit.edu	37	chr17	4718904	4718904	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gactctcggcctcagagaccCtcccacatgacagcccttct	7	18	3	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4718904	T	T	4718904	1	4	220	0	1	0	0	0	0	0	0	0	12141	696	24	4		4	PLD2	17	4718904	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08		4718904	76476306	137	168450											
CAMTA2	23125	broad.mit.edu	37	chr17	4872742	4872742	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctctgtaacccacacactCaaggaaagactgaatcatca	5	13	4	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4872742	G	G	4872742	1	3	220	0	1	0	0	0	0	0	0	0	2640	841	29	4		4	CAMTA2	17	4872742	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	153838	4872742	76322468	138	168451											
TP53	7157	broad.mit.edu	37	chr17	7578275	7578275	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccactcggataagatgctGaggaggggccagacctaaga	13	9	0	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7578275	A	A	7578275	4	1	220	1	0	0	0	0	0	1	0	0	16505	1299	45	4	720	4	TP53	17	7578275	Nonsense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	2705533	7578275	73616935	139	168452											
COPS3	8533	broad.mit.edu	37	chr17	17167995	17167995	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcacagagaagtagtctctGaaaggaccaacacctgaaac	8	10	2	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17167995	A	A	17167995	1	1	220	0	1	0	0	0	0	0	0	0	3766	1305	45	4		4	COPS3	17	17167995	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	9589720	17167995	64027215	140	168453											
KRTAP9-8	83901	broad.mit.edu	37	chr17	39394662	39394662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggttgcctaaaccagaGctgtggctccaactgctgcc	11	14	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39394662	T	T	39394662	3	4	220	1	0	0	0	0	1	0	0	0	8648	971	34	3	361	3	KRTAP9-8	17	39394662	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	22226667	39394662	41800548	141	168454											
KRTAP9-4	85280	broad.mit.edu	37	chr17	39406331	39406331	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggttgcctaaaccagaGctgtggctccaactgctgcc	11	14	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39406331	T	T	39406331	3	4	220	1	0	0	0	0	1	0	0	0	8647	971	34	3	361	3	KRTAP9-4	17	39406331	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	11669	39406331	41788879	142	168455											
BAHCC1	57597	broad.mit.edu	37	chr17	79389339	79389339	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actttagtgggggccggtccCtgccctttcagcctgcagtg	13	13	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79389339	T	T	79389339	1	4	220	0	1	0	0	0	0	0	0	0	1301	696	24	4		4	BAHCC1	17	79389339	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	39983008	79389339	1805871	143	168456											
NARS	4677	broad.mit.edu	37	chr18	55287962	55287962	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actttattcattccttatctTtgtaaacagaacaagcatcg	4	9	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55287962	C	C	55287962	1	2	220	0	1	0	0	0	0	0	0	0	10264	1856	64	5		5	NARS	18	55287962	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08		55287962	22789286	144	168457											
TCF3	6929	broad.mit.edu	37	chr19	1625599	1625599	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccgtctgccgctctccGccgggagctgccggagtagg	16	15	2	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1625599	A	A	1625599	3	1	220	1	0	0	0	0	1	0	0	0	15816	1086	38	4	1772	4	TCF3	19	1625599	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08		1625599	57503384	145	168458											
GLT25D1	79709	broad.mit.edu	37	chr19	17688729	17688729	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcagaatggcaggcagggTgaaccttcttcgtgaccctc	13	11	1	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17688729	G	G	17688729	1	3	220	0	1	0	0	0	0	0	0	0	6530	1711	59	5		5	GLT25D1	19	17688729	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	16063130	17688729	41440254	146	168459											
ZNF676	163223	broad.mit.edu	37	chr19	22363197	22363197	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttctctccagcatgaattCtcttgtgttcagtaaggctt	8	9	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22363197	G	G	22363197	3	3	220	1	0	0	0	0	1	0	0	0	18210	913	32	4	448	4	ZNF676	19	22363197	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	4674468	22363197	36765786	147	168460											
NPHS1	4868	broad.mit.edu	37	chr19	36326455	36326455	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgatcacatgccttggcctCccaaagtgttgggattacag	11	10	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36326455	T	T	36326455	1	4	220	0	1	0	0	0	0	0	0	0	10677	870	30	4		4	NPHS1	19	36326455	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	13963258	36326455	22802528	148	168461											
CCDC8	83987	broad.mit.edu	37	chr19	46914343	46914343	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaataaagagggttgttAggtggagacgtggccagcac	16	5	0	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46914343	G	G	46914343	1	3	220	0	1	0	0	0	0	0	0	0	2881	435	15	5		5	CCDC8	19	46914343	3'UTR	SNP	A	TCGA-75-6207-01A-11D-1753-08	10587888	46914343	12214640	149	168462											
ZNF419	79744	broad.mit.edu	37	chr19	58005450	58005450	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggattcacactggagaaAtgcagtgattgtgtgaaatc	12	5	1	3			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58005450	T	T	58005450	3	4	220	1	0	0	0	0	1	0	0	0	18023	101	4	5	1546	5	ZNF419	19	58005450	Missense_Mutation	SNP	A	TCGA-75-6207-01A-11D-1753-08	11091107	58005450	1123533	150	168463											
SNTA1	6640	broad.mit.edu	37	chr20	31996581	31996581	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaagacatctgcagcttctCgaagggctgtcgcaggagca	13	10	2	2	rs148604302		TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31996581	T	T	31996581	3	4	220	1	0	0	0	0	1	0	0	0	14985	893	31	4	174	4	SNTA1	20	31996581	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08		31996581	31028939	151	168464											
GGT7	2686	broad.mit.edu	37	chr20	33433115	33433115	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggggagcagagaccccGccccaccccgctgctctaca	12	17	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33433115	A	A	33433115	1	1	220	0	1	0	0	0	0	0	0	0	6428	1102	38	4		4	GGT7	20	33433115	3'UTR	SNP	G	TCGA-75-6207-01A-11D-1753-08	1436534	33433115	29592405	152	168465											
EPB41L1	2036	broad.mit.edu	37	chr20	34772998	34772998	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgggggatctagggaggAgtagggccctgtgcccatgc	18	9	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34772998	C	C	34772998	1	2	220	0	1	0	0	0	0	0	0	0	5194	319	11	5		5	EPB41L1	20	34772998	Intron	SNP	A	TCGA-75-6207-01A-11D-1753-08	1339883	34772998	28252522	153	168466											
JPH2	57158	broad.mit.edu	37	chr20	42814998	42814998	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggtctcggtgccatagccGtcttgcaggccattgttcca	11	12	2	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42814998	A	A	42814998	2	1	220	1	0	0	0	0	0	0	0	1	8031	1136	40	4		4	JPH2	20	42814998	Silent	SNP	G	TCGA-75-6207-01A-11D-1753-08	8042000	42814998	20210522	154	168467											
ITSN1	6453	broad.mit.edu	37	chr21	35229205	35229205	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacggcagggggcgatgaCggagggagaggggagggttc	24	6	0	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35229205	T	T	35229205	1	4	220	0	1	0	0	0	0	0	0	0	7996	551	19	4		4	ITSN1	21	35229205	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08		35229205	12900690	155	168468											
PCNT	5116	broad.mit.edu	37	chr21	47864576	47864578	+	Intron	DEL	TTC	-	-													aactctttttttttttttttTtcttctcttggtgtggtaat					rs147229575		TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	47864578	-	-	47864576	6	5	220	0	1	1	0	1	0	0	0	0	11684	1856	64	0		0	PCNT	21	47864576	Intron	DEL	TTC	TCGA-75-6207-01A-11D-1753-08	12635371	47864576	265319	156	168469											
NF2	4771	broad.mit.edu	37	chr22	30074167	30074167	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgacccaagctcctaatccGaaatttctcattaacagccc	4	14	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30074167	A	A	30074167	1	1	220	0	1	0	0	0	0	0	0	0	10452	1073	37	4		4	NF2	22	30074167	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08		30074167	21230399	157	168470											
RFPL3	10738	broad.mit.edu	37	chr22	32754215	32754215	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctggaaaaaccaatgtccCtggagtgtggatgcaccgtc	11	10	1	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32754215	T	T	32754215	2	4	220	1	0	0	0	0	0	0	0	1	13363	680	24	4		4	RFPL3	22	32754215	Silent	SNP	C	TCGA-75-6207-01A-11D-1753-08	2680048	32754215	18550351	158	168471											
EP300	2033	broad.mit.edu	37	chr22	41565377	41565377	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcgcctacctgcctgtgatGagcttcacaaataacgatgt	9	11	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41565377	C	C	41565377	1	2	220	0	1	0	0	0	0	0	0	0	5190	1305	45	4		4	EP300	22	41565377	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	8811162	41565377	9739189	159	168472											
FBLN1	2192	broad.mit.edu	37	chr22	45931041	45931041	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtaagatgcttctggcagGactcttgctaacaatttcct	8	9	2	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45931041	T	T	45931041	1	4	220	0	1	0	0	0	0	0	0	0	5755	1189	41	3		3	FBLN1	22	45931041	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08	4365664	45931041	5373525	160	168473											
GK	2710	broad.mit.edu	37	chrX	30746819	30746819	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aattgtatgcatgtattattGacatatatggtttttgttcc	7	4	0	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30746819	A	A	30746819	1	1	220	0	1	0	0	0	0	0	0	0	6484	1305	45	4		4	GK	23	30746819	Intron	SNP	G	TCGA-75-6207-01A-11D-1753-08		30746819	124523741	161	168474											
FAM120C	54954	broad.mit.edu	37	chrX	54161550	54161550	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgatgagaaaactaaaCgataaaacagacagaaaagc	7	7	0	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54161550	T	T	54161550	1	4	220	0	1	0	0	0	0	0	0	0	5464	551	19	4		4	FAM120C	23	54161550	Intron	SNP	C	TCGA-75-6207-01A-11D-1753-08	23414731	54161550	101109010	162	168475											
PJA1	64219	broad.mit.edu	37	chrX	68381893	68381893	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccgctcttctttccccgGcagagtctcccagctttcgc	7	18	3	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68381893	A	A	68381893	3	1	220	1	0	0	0	0	1	0	0	0	12056	1203	42	4	746	4	PJA1	23	68381893	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	14220343	68381893	86888667	163	168476											
TAF1	6872	broad.mit.edu	37	chrX	70598123	70598123	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggagtccaaattttcccaAtcaactggagatatagataa	8	7	1	2	rs55836865		TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70598123	G	G	70598123	2	3	220	1	0	0	0	0	0	0	0	1	15632	98	4	5		5	TAF1	23	70598123	Silent	SNP	A	TCGA-75-6207-01A-11D-1753-08	2216230	70598123	84672437	164	168477											
NAP1L2	4674	broad.mit.edu	37	chrX	72433189	72433189	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccatcccttccatttgaGgtgattccatgaggagagaa	9	9	0	4			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72433189	A	A	72433189	2	1	220	1	0	0	0	0	0	0	0	1	10251	987	35	4		4	NAP1L2	23	72433189	Silent	SNP	G	TCGA-75-6207-01A-11D-1753-08	1835066	72433189	82837371	165	168478											
IRS4	8471	broad.mit.edu	37	chrX	107976069	107976069	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttactgcttcggcatcagcaGcattagcaacaggttgaaac	9	10	1	1			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107976069	C	C	107976069	3	2	220	1	0	0	0	0	1	0	0	0	7912	971	34	4	271	4	IRS4	23	107976069	Missense_Mutation	SNP	G	TCGA-75-6207-01A-11D-1753-08	35542880	107976069	47294491	166	168479											
ALG13	79868	broad.mit.edu	37	chrX	110971372	110971372	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagcttttttttctgactaTatagtgagaactgcagtgtg	9	6	1	2			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110971372	C	C	110971372	1	2	220	0	1	0	0	0	0	0	0	0	515	1421	49	5		5	ALG13	23	110971372	Intron	SNP	T	TCGA-75-6207-01A-11D-1753-08	2995303	110971372	44299188	167	168480											
MAGEC1	9947	broad.mit.edu	37	chrX	140994562	140994562	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcctacactttattgagtCttttccagagttcccctgag	6	12	2	3	rs138737656		TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140994562	G	G	140994562	3	3	220	1	0	0	0	0	1	0	0	0	9272	913	32	4	1378	4	MAGEC1	23	140994562	Missense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	30023190	140994562	14275998	168	168481											
MTMR1	8776	broad.mit.edu	37	chrX	149901147	149901147	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatggatgctaacgcacagtCacacaagcttatcatctttg	7	10	3	0			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149901147	A	A	149901147	4	1	220	1	0	0	0	0	0	1	0	0	10032	838	29	3	1035	3	MTMR1	23	149901147	Nonsense_Mutation	SNP	C	TCGA-75-6207-01A-11D-1753-08	8906585	149901147	5369413	169	168482											
SKI	6497	broad.mit.edu	37	chr1	2234641	2234641	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacctgcccgctactgagGgctggcacccggcgcagcct	12	18	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2234641	A	A	2234641	1	1	221	0	1	0	0	0	0	0	0	0	14470	1247	43	4		4	SKI	1	2234641	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08		2234641	247015980	1	168483											
CHD5	26038	broad.mit.edu	37	chr1	6194814	6194814	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaggtaggggtggttgcaGcactttttcaggtccatcat	13	7	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6194814	T	T	6194814	4	4	221	1	0	0	0	0	0	1	0	0	3359	963	34	3	2980	3	CHD5	1	6194814	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3960173	6194814	243055807	2	168484											
UBE4B	10277	broad.mit.edu	37	chr1	10114699	10114699	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaattctcttggcaagactGttgccattgttcatttacta	6	8	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10114699	T	T	10114699	1	4	221	0	1	0	0	0	0	0	0	0	17009	1392	48	3		3	UBE4B	1	10114699	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	3919885	10114699	239135922	3	168485											
KIAA0090	23065	broad.mit.edu	37	chr1	19566877	19566877	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggtcaggacacaccaggaCagcctcatccaccacaccac	8	18	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19566877	T	T	19566877	3	4	221	1	0	0	0	0	1	0	0	0	8223	478	17	4	2349	4	KIAA0090	1	19566877	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	9452178	19566877	229683744	4	168486											
HSPG2	3339	broad.mit.edu	37	chr1	22149978	22149978	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgtggccacgtcaggggctCcgcctgccgggaggtgagag	19	12	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22149978	T	T	22149978	3	4	221	1	0	0	0	0	1	0	0	0	7500	855	30	4	172	4	HSPG2	1	22149978	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2583101	22149978	227100643	5	168487											
HSPG2	3339	broad.mit.edu	37	chr1	22165743	22165743	+	Intron	DEL	C	-	-													ggtgtcgggcagggcaggctCcaggaccctgcagcgcctgg							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22165743	-	-	22165743	6	5	221	0	1	1	0	1	0	0	0	0	7500	870	30	0		0	HSPG2	1	22165743	Intron	DEL	C	TCGA-75-6211-01A-11D-1753-08	15765	22165743	227084878	6	168488											
EPHA8	2046	broad.mit.edu	37	chr1	22922539	22922539	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgactcgttccctggttgGggtcaggtcccgggctaggg	16	11	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22922539	T	T	22922539	1	4	221	0	1	0	0	0	0	0	0	0	5215	1247	43	2		2	EPHA8	1	22922539	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	756796	22922539	226328082	7	168489											
LCK	3932	broad.mit.edu	37	chr1	32741606	32741606	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aatctggacaacggtggcttCtacatctcccctcgaatcac	7	14	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32741606	G	G	32741606	3	3	221	1	0	0	0	0	1	0	0	0	8748	912	32	4	595	4	LCK	1	32741606	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	9819067	32741606	216509015	8	168490											
CSMD2	114784	broad.mit.edu	37	chr1	34554532	34554532	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcctagtgagcttggCtcatagcccagctgtttgct	9	13	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34554532	A	A	34554532	1	1	221	0	1	0	0	0	0	0	0	0	3979	812	28	3		3	CSMD2	1	34554532	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1812926	34554532	214696089	9	168491											
CSMD2	114784	broad.mit.edu	37	chr1	34631410	34631410	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggggcgatgcttatgagcCtcattcacaatagcctccta	10	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34631410	T	T	34631410	3	4	221	1	0	0	0	0	1	0	0	0	3979	681	24	4	10734	4	CSMD2	1	34631410	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	76878	34631410	214619211	10	168492											
KIAA0319L	79932	broad.mit.edu	37	chr1	35921600	35921600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaagaaaaaataggaaCcattccctcctacctgcatc	7	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35921600	A	A	35921600	1	1	221	0	1	0	0	0	0	0	0	0	8239	522	18	3		3	KIAA0319L	1	35921600	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1290190	35921600	213329021	11	168493											
EIF2C3	192669	broad.mit.edu	37	chr1	36501854	36501854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggtgatggaaagaagCcttctattgctgctgtgagt	13	7	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36501854	A	A	36501854	3	1	221	1	0	0	0	0	1	0	0	0	5047	739	26	3	1882	3	EIF2C3	1	36501854	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	580254	36501854	212748767	12	168494											
EIF2C3	192669	broad.mit.edu	37	chr1	36505882	36505882	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaaatagctgactatattGaatctttccatttcatattc	3	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36505882	T	T	36505882	1	4	221	0	1	0	0	0	0	0	0	0	5047	1305	45	3		3	EIF2C3	1	36505882	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	4028	36505882	212744739	13	168495											
GRIK3	2899	broad.mit.edu	37	chr1	37271752	37271752	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagtcaatgaggcccccgAtctgggtgaggttgcagttc	15	9	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37271752	G	G	37271752	3	3	221	1	0	0	0	0	1	0	0	0	6841	333	12	5	504	5	GRIK3	1	37271752	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	765870	37271752	211978869	14	168496											
SNIP1	79753	broad.mit.edu	37	chr1	38006344	38006344	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcccgtcctctccggggatGatcctcacgctcctaaaatt	7	16	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38006344	A	A	38006344	3	1	221	1	0	0	0	0	1	0	0	0	14962	1290	45	4	858	4	SNIP1	1	38006344	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	734592	38006344	211244277	15	168497											
MPL	4352	broad.mit.edu	37	chr1	43812325	43812325	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactttcttcctcattcttCccacatagttcccaccccca	2	18	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43812325	G	G	43812325	1	3	221	0	1	0	0	0	0	0	0	0	9824	870	30	4		4	MPL	1	43812325	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5805981	43812325	205438296	16	168498											
CYP4A11	1579	broad.mit.edu	37	chr1	47398461	47398461	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagaagggcaggaaagCgtggctgtgttgagcagaac	16	7	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47398461	T	T	47398461	3	4	221	1	0	0	0	0	1	0	0	0	4216	768	27	4	231	4	CYP4A11	1	47398461	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3586136	47398461	201852160	17	168499											
AGBL4	84871	broad.mit.edu	37	chr1	50310416	50310416	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctaaagcaacgtatctctGaagaaatatccaacaatgtc	5	9	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50310416	A	A	50310416	1	1	221	0	1	0	0	0	0	0	0	0	377	1305	45	4		4	AGBL4	1	50310416	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2911955	50310416	198940205	18	168500											
C1orf175	374977	broad.mit.edu	37	chr1	55118514	55118514	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catggctgcatttgtcttttCtctctctcaagactgctgct	7	12	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55118514	G	G	55118514	1	3	221	0	1	0	0	0	0	0	0	0	2036	928	32	4		4	C1orf175	1	55118514	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	4808098	55118514	194132107	19	168501											
INADL	10207	broad.mit.edu	37	chr1	62288473	62288473	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataattttacctgaagctaAttttcctattattgtcctct	3	9	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62288473	C	C	62288473	1	2	221	0	1	0	0	0	0	0	0	0	7801	116	4	5		5	INADL	1	62288473	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	7169959	62288473	186962148	20	168502											
CACHD1	57685	broad.mit.edu	37	chr1	65157011	65157011	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgttctttttctaggttacAgcaccatgagcccacaggag	9	10	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65157011	T	T	65157011	3	4	221	1	0	0	0	0	1	0	0	0	2563	188	7	5	3545	5	CACHD1	1	65157011	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	2868538	65157011	184093610	21	168503											
TNNI3K	51086	broad.mit.edu	37	chr1	74716532	74716532	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcttttttttttttttttCaaattagtaatcatggaaaa	5	3	2	0	rs66515031		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74716532	A	A	74716532	1	1	221	0	1	0	0	0	0	0	0	0	16452	841	29	3		3	TNNI3K	1	74716532	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	9559521	74716532	174534089	22	168504											
SLC44A5	204962	broad.mit.edu	37	chr1	75672460	75672460	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagaacaattatacaCatttttataaattggagggt	8	5	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75672460	A	A	75672460	1	1	221	0	1	0	0	0	0	0	0	0	14753	493	17	3		3	SLC44A5	1	75672460	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	955928	75672460	173578161	23	168505											
PIGK	10026	broad.mit.edu	37	chr1	77660920	77660920	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttttcttactggcagggCgacctgcagctgtggagacc	13	11	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77660920	A	A	77660920	1	1	221	0	1	0	0	0	0	0	0	0	11985	783	27	3		3	PIGK	1	77660920	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1988460	77660920	171589701	24	168506											
ELTD1	64123	broad.mit.edu	37	chr1	79383572	79383572	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaaatccaactaccacgGctgggcttagatagccaaag	9	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79383572	T	T	79383572	3	4	221	1	0	0	0	0	1	0	0	0	5126	1203	42	3	467	3	ELTD1	1	79383572	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1722652	79383572	169867049	25	168507											
LPHN2	23266	broad.mit.edu	37	chr1	82416126	82416126	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtggcctcagacacaaagGggaatgatggttgaacgacc	13	8	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82416126	A	A	82416126	2	1	221	1	0	0	0	0	0	0	0	1	9003	1223	43	4		4	LPHN2	1	82416126	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	3032554	82416126	166834495	26	168508											
C1orf52	148423	broad.mit.edu	37	chr1	85724262	85724262	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagctttcttagcattctgTggagcatcatcaccattgtc	7	11	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85724262	C	C	85724262	2	2	221	1	0	0	0	0	0	0	0	1	2066	1683	59	5		5	C1orf52	1	85724262	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	3308136	85724262	163526359	27	168509											
COL24A1	255631	broad.mit.edu	37	chr1	86341089	86341089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtaacactgaactcaaGggtgagatacctgtgtccaa	12	8	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86341089	T	T	86341089	1	4	221	0	1	0	0	0	0	0	0	0	3715	1015	35	2		2	COL24A1	1	86341089	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	616827	86341089	162909532	28	168510											
CLCA1	1179	broad.mit.edu	37	chr1	86954799	86954799	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgccatcatccacacaGtcgctttggggccctctgca	11	14	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86954799	A	A	86954799	3	1	221	1	0	0	0	0	1	0	0	0	3488	1029	36	4	1333	4	CLCA1	1	86954799	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	613710	86954799	162295822	29	168511											
PTBP2	58155	broad.mit.edu	37	chr1	97278772	97278772	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatggccaaaattcaagtAtttaataagccctttctaat	6	7	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97278772	G	G	97278772	1	3	221	0	1	0	0	0	0	0	0	0	12832	464	16	5		5	PTBP2	1	97278772	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	10323973	97278772	151971849	30	168512											
SYT6	148281	broad.mit.edu	37	chr1	114680347	114680347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtgcacccgggtctgcaGcttgcatttgcggtcaggca	15	12	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114680347	T	T	114680347	3	4	221	1	0	0	0	0	1	0	0	0	15597	962	34	3	711	3	SYT6	1	114680347	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	17401575	114680347	134570274	31	168513											
BCAS2	10286	broad.mit.edu	37	chr1	115124154	115124154	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggggcttcataaccttgaTcaaaatacggcagcgcatcc	9	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	115124154	C	C	115124154	3	2	221	1	0	0	0	0	1	0	0	0	1356	1435	50	5	646	5	BCAS2	1	115124154	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	443807	115124154	134126467	32	168514											
DENND2C	163259	broad.mit.edu	37	chr1	115168229	115168229	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagacatcttctttacagCtttcaatttctttgacccga	4	11	4	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115168229	A	A	115168229	3	1	221	1	0	0	0	0	1	0	0	0	4470	797	28	3	2306	3	DENND2C	1	115168229	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	44075	115168229	134082392	33	168515											
FMO5	2330	broad.mit.edu	37	chr1	146687287	146687287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattcatttacttggcaaaCaacttcaaacacaaagatac	3	9	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146687287	A	A	146687287	1	1	221	0	1	0	0	0	0	0	0	0	6016	493	17	3		3	FMO5	1	146687287	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	31519058	146687287	102563334	34	168516											
TARS2	80222	broad.mit.edu	37	chr1	150463063	150463063	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgaacttgtgaaccccttTtttgtgaacccaggtgttct	8	9	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150463063	C	C	150463063	1	2	221	0	1	0	0	0	0	0	0	0	15679	1856	64	5		5	TARS2	1	150463063	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	3775776	150463063	98787558	35	168517											
SEMA6C	10500	broad.mit.edu	37	chr1	151107031	151107031	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaaggccaagcctgggatGgtgtctgtggccatcatggc	14	10	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151107031	A	A	151107031	1	1	221	0	1	0	0	0	0	0	0	0	14154	1363	47	4		4	SEMA6C	1	151107031	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	643968	151107031	98143590	36	168518											
FLG	2312	broad.mit.edu	37	chr1	152275883	152275883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcatggtgacgcgaccCtgagtgcctggagccgtctc	13	13	2	2	rs140464988		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152275883	A	A	152275883	3	1	221	1	0	0	0	0	1	0	0	0	5979	681	24	2	710	2	FLG	1	152275883	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1168852	152275883	96974738	37	168519											
FLG	2312	broad.mit.edu	37	chr1	152276645	152276645	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgtggggtgtctggagccatCtcttgactgctcctgagcag	14	11	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152276645	G	G	152276645	3	3	221	1	0	0	0	0	1	0	0	0	5979	913	32	4	1472	4	FLG	1	152276645	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	762	152276645	96973976	38	168520											
FLG	2312	broad.mit.edu	37	chr1	152282768	152282769	+	Missense_Mutation	DNP	GG	TT	TT													tctgggtcctgactgcccatGggaggcatcagaccttccct							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	152282769	TT	TT	152282768	3	4	221	1	0	0	0	0	1	0	0	0	5979	1348	47	2	7595	2	FLG	1	152282768	Missense_Mutation	DNP	GG	TCGA-75-6211-01A-11D-1753-08	6123	152282768	96967853	39	168521											
LCE2C	353140	broad.mit.edu	37	chr1	152648564	152648564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaagtgtaccccaaaatgtCcacctaagtgtccccccaaa	5	16	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152648564	A	A	152648564	3	1	221	1	0	0	0	0	1	0	0	0	8739	855	30	3	75	3	LCE2C	1	152648564	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	365796	152648564	96602057	40	168522											
ARHGEF2	9181	broad.mit.edu	37	chr1	155933032	155933032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggctaaaactcgtggggCcctaggataaggacctcaca	11	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155933032	A	A	155933032	1	1	221	0	1	0	0	0	0	0	0	0	905	754	26	3		3	ARHGEF2	1	155933032	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3284468	155933032	93317589	41	168523											
SSR2	6746	broad.mit.edu	37	chr1	155984896	155984896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaacggaaagagatgaagCtaaagttgtagcagcctttc	12	6	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155984896	A	A	155984896	1	1	221	0	1	0	0	0	0	0	0	0	15309	812	28	3		3	SSR2	1	155984896	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	51864	155984896	93265725	42	168524											
IQGAP3	128239	broad.mit.edu	37	chr1	156503971	156503972	+	Intron	DNP	CC	AA	AA													atgtgagagagcggggagggCcagcaccccacacatcttct							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	156503972	AA	AA	156503971	1	1	221	0	1	0	0	0	0	0	0	0	7886	754	26	3		3	IQGAP3	1	156503971	Intron	DNP	CC	TCGA-75-6211-01A-11D-1753-08	519075	156503971	92746650	43	168525											
ARHGEF11	9826	broad.mit.edu	37	chr1	156955931	156955931	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggggacttgcgctctgGtgcagaatctcccagagaag	15	9	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156955931	A	A	156955931	3	1	221	1	0	0	0	0	1	0	0	0	898	1261	44	4	4781	4	ARHGEF11	1	156955931	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	451960	156955931	92294690	44	168526											
CD5L	922	broad.mit.edu	37	chr1	157805822	157805822	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccagctcccggcacaacAcagccacgtccttaatgtcc	7	18	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	157805822	G	G	157805822	3	3	221	1	0	0	0	0	1	0	0	0	3057	159	6	5	880	5	CD5L	1	157805822	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	849891	157805822	91444799	45	168527											
CD1E	913	broad.mit.edu	37	chr1	158325783	158325783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtcctgcctaatgctgaCgagacatggtatctccgagc	11	12	1	2	rs73012021	by1000genomes	TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325783	A	A	158325783	3	1	221	1	0	0	0	0	1	0	0	0	3008	535	19	3	806	3	CD1E	1	158325783	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	519961	158325783	90924838	46	168528											
OR10R2	343406	broad.mit.edu	37	chr1	158450371	158450371	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttccctttctgtttatctGtgtttcttatctctgcattc	6	10	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158450371	T	T	158450371	3	4	221	1	0	0	0	0	1	0	0	0	11011	1377	48	3	706	3	OR10R2	1	158450371	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	124588	158450371	90800250	47	168529											
SPTA1	6708	broad.mit.edu	37	chr1	158609274	158609274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacactaagaacaattttGcaaggctatgttttcaaatg	7	6	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158609274	T	T	158609274	1	4	221	0	1	0	0	0	0	0	0	0	15234	1334	46	3		3	SPTA1	1	158609274	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	158903	158609274	90641347	48	168530											
MNDA	4332	broad.mit.edu	37	chr1	158813937	158813937	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actcttcctggtcctcttctCcatttttttttaacccagtc	3	14	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158813937	A	A	158813937	1	1	221	0	1	0	0	0	0	0	0	0	9770	870	30	3		3	MNDA	1	158813937	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	204663	158813937	90436684	49	168531											
CRP	1401	broad.mit.edu	37	chr1	159683541	159683541	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctgccccaagatgatgCttgcttctgcccccacagtg	9	16	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159683541	A	A	159683541	3	1	221	1	0	0	0	0	1	0	0	0	3927	797	28	3	229	3	CRP	1	159683541	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	869604	159683541	89567080	50	168532											
DDR2	4921	broad.mit.edu	37	chr1	162689027	162689027	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtctaaaagctgccaagaGggactacaaagctctttctt	10	9	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162689027	T	T	162689027	1	4	221	0	1	0	0	0	0	0	0	0	4370	1015	35	2		2	DDR2	1	162689027	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	3005486	162689027	86561594	51	168533											
DUSP27	92235	broad.mit.edu	37	chr1	167086711	167086711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacgccctgtgtcctggacCtacagcgggccctggttcag	12	14	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167086711	A	A	167086711	3	1	221	1	0	0	0	0	1	0	0	0	4864	680	24	2	362	2	DUSP27	1	167086711	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	4397684	167086711	82163910	52	168534											
MYOC	4653	broad.mit.edu	37	chr1	171607874	171607874	+	Intron	DEL	G	-	-													acgtagaaactgcattaaaaGaaagagacaaaattttactg							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	171607874	-	-	171607874	6	5	221	0	1	1	0	1	0	0	0	0	10180	957	33	0		0	MYOC	1	171607874	Intron	DEL	G	TCGA-75-6211-01A-11D-1753-08	4521163	171607874	77642747	53	168535											
TNR	7143	broad.mit.edu	37	chr1	175365799	175365799	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacaccactccaatctccaGgcacccgctgctggagctgg	10	16	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175365799	A	A	175365799	3	1	221	1	0	0	0	0	1	0	0	0	16461	1000	35	4	3031	4	TNR	1	175365799	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3757925	175365799	73884822	54	168536											
PAPPA2	60676	broad.mit.edu	37	chr1	176564173	176564173	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgagaagtacccacgacTtgaggttctccagggctttg	12	9	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176564173	A	A	176564173	3	1	221	1	0	0	0	0	1	0	0	0	11527	1609	56	5	1439	5	PAPPA2	1	176564173	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1198374	176564173	72686448	55	168537											
CACNA1E	777	broad.mit.edu	37	chr1	181725204	181725204	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctgaccctcttcaccGtctccacaggggaaggatgg	11	15	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	181725204	A	A	181725204	3	1	221	1	0	0	0	0	1	0	0	0	2568	1145	40	4	4216	4	CACNA1E	1	181725204	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	5161031	181725204	67525417	56	168538											
RNASEL	6041	broad.mit.edu	37	chr1	182554312	182554312	+	Intron	DEL	C	-	-													attggtagcaggagacactgCactgtaattatgaatttgtt							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182554312	-	-	182554312	6	5	221	0	1	1	0	1	0	0	0	0	13527	725	25	0		0	RNASEL	1	182554312	Intron	DEL	C	TCGA-75-6211-01A-11D-1753-08	829108	182554312	66696309	57	168539											
C1orf26	54823	broad.mit.edu	37	chr1	185191096	185191096	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttctcgagttctcatcTtccccaacccagcaggcatc	6	15	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185191096	C	C	185191096	3	2	221	1	0	0	0	0	1	0	0	0	2057	1609	56	5	2291	5	C1orf26	1	185191096	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	2636784	185191096	64059525	58	168540											
HMCN1	83872	broad.mit.edu	37	chr1	186010017	186010017	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtttgcctacttaaaaaTgtccaagggaaaatcttcct	7	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186010017	C	C	186010017	1	2	221	0	1	0	0	0	0	0	0	0	7287	1479	51	5		5	HMCN1	1	186010017	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	818921	186010017	63240604	59	168541											
HMCN1	83872	broad.mit.edu	37	chr1	186158963	186158963	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaatgggaccattgaatatCagaccacattcatagtttat	6	9	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186158963	A	A	186158963	3	1	221	1	0	0	0	0	1	0	0	0	7287	827	29	3	17287	3	HMCN1	1	186158963	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	148946	186158963	63091658	60	168542											
RGS1	5996	broad.mit.edu	37	chr1	192545461	192545461	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatctatgatcccacatctgGaatctggaatgaaatcttcc	7	10	4	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192545461	T	T	192545461	4	4	221	1	0	0	0	0	0	1	0	0	13401	1175	41	3	190	3	RGS1	1	192545461	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	6386498	192545461	56705160	61	168543											
RGS1	5996	broad.mit.edu	37	chr1	192547461	192547461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagtctgatcttttgccCtgtaaagcagaagagatata	9	7	2	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192547461	A	A	192547461	2	1	221	1	0	0	0	0	0	0	0	1	13401	668	24	2		2	RGS1	1	192547461	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	2000	192547461	56703160	62	168544											
DENND1B	163486	broad.mit.edu	37	chr1	197621405	197621405	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttgcctttggtactgggTggttatacagtgatctgaga	12	5	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197621405	A	A	197621405	3	1	221	1	0	0	0	0	1	0	0	0	4467	1696	59	5	2029	5	DENND1B	1	197621405	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	5073944	197621405	51629216	63	168545											
PTPRC	5788	broad.mit.edu	37	chr1	198721616	198721616	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aataatgtttcagaataacaTtttaaaattatttaaataga	3	2	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198721616	A	A	198721616	1	1	221	0	1	0	0	0	0	0	0	0	12905	1508	52	5		5	PTPRC	1	198721616	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	1100211	198721616	50529005	64	168546											
LMOD1	25802	broad.mit.edu	37	chr1	201915292	201915292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccggttgtacacacccgtGgactgtttctccgtctggtt	10	13	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201915292	T	T	201915292	2	4	221	1	0	0	0	0	0	0	0	1	8930	1335	47	2		2	LMOD1	1	201915292	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	3193676	201915292	47335329	65	168547											
LGR6	59352	broad.mit.edu	37	chr1	202245537	202245537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaatgcactcacggagatcCctgtcagggccctcaacaac	8	15	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202245537	A	A	202245537	3	1	221	1	0	0	0	0	1	0	0	0	8830	623	22	2	697	2	LGR6	1	202245537	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	330245	202245537	47005084	66	168548											
SYT2	127833	broad.mit.edu	37	chr1	202571690	202571690	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagctgtggagagagatggGgagaaggggcctgagtctca	18	5	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202571690	T	T	202571690	1	4	221	0	1	0	0	0	0	0	0	0	15593	1247	43	2		2	SYT2	1	202571690	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	326153	202571690	46678931	67	168549											
SLC41A1	254428	broad.mit.edu	37	chr1	205766955	205766955	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagggtctgacccccaccccAtctctccagggtttaaaaag	8	14	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	205766955	G	G	205766955	1	3	221	0	1	0	0	0	0	0	0	0	14743	232	8	5		5	SLC41A1	1	205766955	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	3195265	205766955	43483666	68	168550											
USH2A	7399	broad.mit.edu	37	chr1	215847408	215847408	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatagaaaggtcagcagtggCttactctcagaaaaccgaga	10	8	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215847408	G	G	215847408	1	3	221	0	1	0	0	0	0	0	0	0	17162	812	28	4		4	USH2A	1	215847408	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	10080453	215847408	33403213	69	168551											
USH2A	7399	broad.mit.edu	37	chr1	216369927	216369927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgggaatagactgttgagGtgattgttcagaaagcatat	12	4	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216369927	T	T	216369927	3	4	221	1	0	0	0	0	1	0	0	0	17162	1261	44	3	11619	3	USH2A	1	216369927	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	522519	216369927	32880694	70	168552											
GPATCH2	55105	broad.mit.edu	37	chr1	217622577	217622577	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgctccactctaacccTgcttttgttttacctgcagt	6	12	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217622577	A	A	217622577	1	1	221	0	1	0	0	0	0	0	0	0	6656	1595	55	5		5	GPATCH2	1	217622577	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	1252650	217622577	31628044	71	168553											
OBSCN	84033	broad.mit.edu	37	chr1	228412410	228412410	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaggctgggggccagcgGctctccttccatctggatgt	15	12	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228412410	T	T	228412410	2	4	221	1	0	0	0	0	0	0	0	1	10907	1190	42	3		3	OBSCN	1	228412410	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	10789833	228412410	20838211	72	168554											
OBSCN	84033	broad.mit.edu	37	chr1	228504379	228504379	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccctgctccggcgcttgcCctcacaacccttccttgggc	8	20	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228504379	T	T	228504379	1	4	221	0	1	0	0	0	0	0	0	0	10907	638	22	4		4	OBSCN	1	228504379	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	91969	228504379	20746242	73	168555											
HEATR1	55127	broad.mit.edu	37	chr1	236746130	236746130	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcaagtgcagatagtccCtgctgtcttctttcagttgt	10	9	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236746130	A	A	236746130	3	1	221	1	0	0	0	0	1	0	0	0	7094	681	24	2	4074	2	HEATR1	1	236746130	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	8241751	236746130	12504491	74	168556											
GREM2	64388	broad.mit.edu	37	chr1	240656615	240656615	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggcctcctggctggagGccagcacctccttgatctgg	13	15	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	240656615	T	T	240656615	3	4	221	1	0	0	0	0	1	0	0	0	6828	1203	42	3	349	3	GREM2	1	240656615	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3910485	240656615	8594006	75	168557											
ZNF238	10472	broad.mit.edu	37	chr1	244218618	244218618	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcgaagcactgagcttGcctactgtcagagactggac	11	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	244218618	A	A	244218618	2	1	221	1	0	0	0	0	0	0	0	1	17916	1310	46	4		4	ZNF238	1	244218618	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	3562003	244218618	5032003	76	168558											
ZNF124	7678	broad.mit.edu	37	chr1	247319988	247319988	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatagggtttctctccagtAtgagtcctttcatggtcacg	9	10	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247319988	G	G	247319988	2	3	221	1	0	0	0	0	0	0	0	1	17846	446	16	5		5	ZNF124	1	247319988	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	3101370	247319988	1930633	77	168559											
VN1R5	317705	broad.mit.edu	37	chr1	247419801	247419801	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctcctgagtgtgctccAggccatcatcagccccagca	9	17	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247419801	G	G	247419801	3	3	221	1	0	0	0	0	1	0	0	0	17308	188	7	5	430	5	VN1R5	1	247419801	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	99813	247419801	1830820	78	168560											
OR2B11	127623	broad.mit.edu	37	chr1	247614347	247614347	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcatcatccacagagcctcCagatcctggccagaagtctc	7	16	3	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614347	A	A	247614347	3	1	221	1	0	0	0	0	1	0	0	0	11082	595	21	2	18	2	OR2B11	1	247614347	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	194546	247614347	1636274	79	168561											
OR1C1	26188	broad.mit.edu	37	chr1	247921653	247921653	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctgctgctctgctgagCtaggaagtcccagaaggacg	15	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247921653	A	A	247921653	3	1	221	1	0	0	0	0	1	0	0	0	11046	797	28	3	890	3	OR1C1	1	247921653	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	307306	247921653	1328968	80	168562											
OR2T2	401992	broad.mit.edu	37	chr1	248616419	248616419	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatcttcctctacctgacCctgattggaggggaattctt	9	11	3	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248616419	A	A	248616419	2	1	221	1	0	0	0	0	0	0	0	1	11114	610	22	2		2	OR2T2	1	248616419	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	694766	248616419	634202	81	168563											
PXDN	7837	broad.mit.edu	37	chr2	1653010	1653010	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgttgctgcacacgttgcTgcagtgctgtccgtcggaga	14	11	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1653010	A	A	1653010	3	1	221	1	0	0	0	0	1	0	0	0	12955	1580	55	5	1925	5	PXDN	2	1653010	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08		1653010	241546363	82	168564											
TSSC1	7260	broad.mit.edu	37	chr2	3200660	3200660	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gggctcactgacctcatgctCcgggtgtcccagccacggag	13	15	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3200660	A	A	3200660	2	1	221	1	0	0	0	0	0	0	0	1	16791	842	30	3		3	TSSC1	2	3200660	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	1547650	3200660	239998713	83	168565											
C2orf39	92749	broad.mit.edu	37	chr2	26652528	26652528	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgaccagtatgtgaaGgatttgaagaaacagtcaga	12	4	1	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26652528	T	T	26652528	3	4	221	1	0	0	0	0	1	0	0	0	2186	991	35	2	591	2	C2orf39	2	26652528	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	23451868	26652528	216546845	84	168566											
SOS1	6654	broad.mit.edu	37	chr2	39233756	39233756	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctaacagaaacgcccaaAtacaacagtatcaatttgat	6	9	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39233756	C	C	39233756	1	2	221	0	1	0	0	0	0	0	0	0	15050	116	4	5		5	SOS1	2	39233756	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	12581228	39233756	203965617	85	168567											
MSH6	2956	broad.mit.edu	37	chr2	48034055	48034055	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtggtaaattcagacAacattatgatctaataaact	6	6	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48034055	T	T	48034055	1	4	221	0	1	0	0	0	0	0	0	0	9968	145	5	5		5	MSH6	2	48034055	3'UTR	SNP	A	TCGA-75-6211-01A-11D-1753-08	8800299	48034055	195165318	86	168568											
STON1-GTF2A1L	286749	broad.mit.edu	37	chr2	48873798	48873798	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgctacagcaacccgcaAttctaccttctgggccagta	8	15	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48873798	G	G	48873798	3	3	221	1	0	0	0	0	1	0	0	0	15435	101	4	5	2733	5	STON1-GTF2A1L	2	48873798	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	839743	48873798	194325575	87	168569											
NRXN1	9378	broad.mit.edu	37	chr2	50280813	50280813	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaacagatcttttatggGgtgaataatgagagcaataa	9	3	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50280813	T	T	50280813	1	4	221	0	1	0	0	0	0	0	0	0	10760	1247	43	2		2	NRXN1	2	50280813	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1407015	50280813	192918560	88	168570											
ANTXR1	84168	broad.mit.edu	37	chr2	69300318	69300318	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccacactctctctattcatGtgataggtgttctttgcaaa	7	10	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69300318	C	C	69300318	1	2	221	0	1	0	0	0	0	0	0	0	711	1392	48	4		4	ANTXR1	2	69300318	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	19019505	69300318	173899055	89	168571											
NAT8B	51471	broad.mit.edu	37	chr2	73928033	73928033	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaacagctgcaaccgcttctCcctcaaggtgggatcatcaa	8	13	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73928033	A	A	73928033	4	1	221	1	0	0	0	0	0	1	0	0	10274	864	30	3	287	3	NAT8B	2	73928033	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	4627715	73928033	169271340	90	168572											
NAT8B	51471	broad.mit.edu	37	chr2	73928243	73928243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgaggctgaacacgaGggccagaatccaggagccag	16	10	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73928243	T	T	73928243	3	4	221	1	0	0	0	0	1	0	0	0	10274	1000	35	2	497	2	NAT8B	2	73928243	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	210	73928243	169271130	91	168573											
SMYD1	150572	broad.mit.edu	37	chr2	88367607	88367607	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctcaaaaatcatcagggGaagggataaaattcatgtgc	10	7	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88367607	T	T	88367607	1	4	221	0	1	0	0	0	0	0	0	0	14935	1189	41	3		3	SMYD1	2	88367607	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	14439364	88367607	154831766	92	168574											
TRIM43	129868	broad.mit.edu	37	chr2	96260875	96260875	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctatatgaggagggaagAacagccttcctctggagggt	13	7	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96260875	G	G	96260875	2	3	221	1	0	0	0	0	0	0	0	1	16642	243	9	5		5	TRIM43	2	96260875	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	7893268	96260875	146938498	93	168575											
SNRNP200	23020	broad.mit.edu	37	chr2	96943765	96943765	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggccaaagcaccacgtGgcccaggctcacacagccct	9	18	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96943765	A	A	96943765	1	1	221	0	1	0	0	0	0	0	0	0	14966	1363	47	4		4	SNRNP200	2	96943765	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	682890	96943765	146255608	94	168576											
KIAA1310	55683	broad.mit.edu	37	chr2	97275366	97275366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcctatgaaaataagaaCgtatttcttttctgggttgt	8	6	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97275366	A	A	97275366	1	1	221	0	1	0	0	0	0	0	0	0	8292	551	19	3		3	KIAA1310	2	97275366	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	331601	97275366	145924007	95	168577											
ANKRD36B	57730	broad.mit.edu	37	chr2	98195478	98195478	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgactatatctttttctcCaagagtaacagcaagtatga	6	7	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98195478	T	T	98195478	3	4	221	1	0	0	0	0	1	0	0	0	666	603	21	4	3631	4	ANKRD36B	2	98195478	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	920112	98195478	145003895	96	168578											
VWA3B	200403	broad.mit.edu	37	chr2	98887214	98887214	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccaggctttagaacggttGaattggcccatttcactgaa	9	9	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98887214	T	T	98887214	3	4	221	1	0	0	0	0	1	0	0	0	17368	1281	45	3	2995	3	VWA3B	2	98887214	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	691736	98887214	144312159	97	168579											
CNGA3	1261	broad.mit.edu	37	chr2	99012551	99012551	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgttcaggattgggaacttGgtcttgtacattctcatcat	9	7	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99012551	C	C	99012551	3	2	221	1	0	0	0	0	1	0	0	0	3630	1339	47	4	944	4	CNGA3	2	99012551	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	125337	99012551	144186822	98	168580											
INPP4A	3631	broad.mit.edu	37	chr2	99185059	99185059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatacgtctttacaagaaGtcatcaacgtggagagtttg	11	7	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99185059	T	T	99185059	3	4	221	1	0	0	0	0	1	0	0	0	7822	1029	36	3	2543	3	INPP4A	2	99185059	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	172508	99185059	144014314	99	168581											
LONRF2	164832	broad.mit.edu	37	chr2	100917092	100917092	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagagaatcctgacaaatgCatgcacgtcatacctccgag	8	12	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100917092	T	T	100917092	1	4	221	0	1	0	0	0	0	0	0	0	8982	725	25	4		4	LONRF2	2	100917092	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1732033	100917092	142282281	100	168582											
IL1R2	7850	broad.mit.edu	37	chr2	102636286	102636286	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatcaagagtaagtacttgCcattgaggcacctatctatc	8	10	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102636286	A	A	102636286	1	1	221	0	1	0	0	0	0	0	0	0	7729	754	26	3		3	IL1R2	2	102636286	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1719194	102636286	140563087	101	168583											
MERTK	10461	broad.mit.edu	37	chr2	112755053	112755053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccaggagacaaagtttgGgtaagtctcccagctaaaaa	10	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112755053	T	T	112755053	3	4	221	1	0	0	0	0	1	0	0	0	9572	1246	43	2	1642	2	MERTK	2	112755053	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	10118767	112755053	130444320	102	168584											
POLR1B	84172	broad.mit.edu	37	chr2	113316941	113316941	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttcatacgctacctctccCatttccgctgcgtgcacaga	6	16	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113316941	T	T	113316941	3	4	221	1	0	0	0	0	1	0	0	0	12305	594	21	4	1436	4	POLR1B	2	113316941	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	561888	113316941	129882432	103	168585											
EN1	2019	broad.mit.edu	37	chr2	119604045	119604045	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgccctgcgctccggggctCcccgcgccgcctccactgcc	12	22	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119604045	T	T	119604045	2	4	221	1	0	0	0	0	0	0	0	1	5151	842	30	4		4	EN1	2	119604045	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	6287104	119604045	123595328	104	168586											
CNTNAP5	129684	broad.mit.edu	37	chr2	125204514	125204514	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttagacattgactatgaGgtgagttgatcctccttcct	9	10	0	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125204514	T	T	125204514	3	4	221	1	0	0	0	0	1	0	0	0	3682	1014	35	2	940	2	CNTNAP5	2	125204514	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	5600469	125204514	117994859	105	168587											
CFC1B	653275	broad.mit.edu	37	chr2	131356256	131356256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggagcggctcctccggcCcccagccctcggcgctccca	13	20	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131356256	A	A	131356256	3	1	221	1	0	0	0	0	1	0	0	0	3310	623	22	2	1177	2	CFC1B	2	131356256	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	6151742	131356256	111843117	106	168588											
GPR148	344561	broad.mit.edu	37	chr2	131486929	131486929	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacactggctgtcagccccCtgctgctggtgaccatcctg	10	17	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131486929	A	A	131486929	3	1	221	1	0	0	0	0	1	0	0	0	6718	680	24	2	207	2	GPR148	2	131486929	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	130673	131486929	111712444	107	168589											
POTEE	445582	broad.mit.edu	37	chr2	131981333	131981333	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggtttgatttcaatacAtagcataaaaatgagttttc	9	4	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131981333	C	C	131981333	1	2	221	0	1	0	0	0	0	0	0	0	12360	232	8	5		5	POTEE	2	131981333	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	494404	131981333	111218040	108	168590											
LYPD6	130574	broad.mit.edu	37	chr2	150327362	150327362	+	Nonstop_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggttagggctcatgttaTagtggctcagtggctccatg	14	7	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150327362	C	C	150327362	4	2	221	1	0	0	0	0	0	0	0	0	9202	1419	49	5	528	5	LYPD6	2	150327362	Nonstop_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	18346029	150327362	92872011	109	168591											
FMNL2	114793	broad.mit.edu	37	chr2	153246591	153246592	+	Intron	DNP	GG	TT	TT													cttgactccccaggaaagcaGgagaagaaggaggaagatga							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	153246592	TT	TT	153246591	1	4	221	0	1	0	0	0	0	0	0	0	6010	1015	35	2		2	FMNL2	2	153246591	Intron	DNP	GG	TCGA-75-6211-01A-11D-1753-08	2919229	153246591	89952782	110	168592											
KCNJ3	3760	broad.mit.edu	37	chr2	155711698	155711698	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	taaaaccaccaagatgttatCtgatcccatgagccagtctg	7	11	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155711698	A	A	155711698	3	1	221	1	0	0	0	0	1	0	0	0	8122	913	32	3	1389	3	KCNJ3	2	155711698	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2465107	155711698	87487675	111	168593											
CCDC148	130940	broad.mit.edu	37	chr2	159195539	159195539	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagatcattttctattctcTgttgctccagcctaagtctt	5	10	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159195539	C	C	159195539	3	2	221	1	0	0	0	0	1	0	0	0	2808	1580	55	5	1318	5	CCDC148	2	159195539	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	3483841	159195539	84003834	112	168594											
GRB14	2888	broad.mit.edu	37	chr2	165353427	165353427	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttttatgataagcccaaatCaagaactctttgtggctatg	8	7	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165353427	T	T	165353427	1	4	221	0	1	0	0	0	0	0	0	0	6823	841	29	4		4	GRB14	2	165353427	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	6157888	165353427	77845946	113	168595											
SCN3A	6328	broad.mit.edu	37	chr2	165970389	165970389	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaccagttgtgctcaacAatactgtagcaggtttttcg	8	9	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	165970389	G	G	165970389	2	3	221	1	0	0	0	0	0	0	0	1	14031	126	5	5		5	SCN3A	2	165970389	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	616962	165970389	77228984	114	168596											
SCN1A	6323	broad.mit.edu	37	chr2	166898802	166898802	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatagaatttgttaccaacCttctactgtatttgttagaa	5	6	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166898802	A	A	166898802	4	1	221	1	0	0	0	0	0	1	0	0	14027	695	24	2	3913	2	SCN1A	2	166898802	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	928413	166898802	76300571	115	168597											
LRP2	4036	broad.mit.edu	37	chr2	170145561	170145561	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtacggctgtcattgtgGttgatgatataacctggggg	15	6	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170145561	T	T	170145561	3	4	221	1	0	0	0	0	1	0	0	0	9043	1252	44	3	13234	3	LRP2	2	170145561	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3246759	170145561	73053812	116	168598											
MYO3B	140469	broad.mit.edu	37	chr2	171056646	171056646	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaatccagcttgcattttTctaccctgtttaggatatgg	7	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	171056646	G	G	171056646	1	3	221	0	1	0	0	0	0	0	0	0	10171	1798	62	5		5	MYO3B	2	171056646	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	911085	171056646	72142727	117	168599											
GORASP2	26003	broad.mit.edu	37	chr2	171804844	171804845	+	Intron	INS	-	T	T													tacattttttatttttgtcgINStttttgtttccgcaggtaca							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171804845	T	T	171804844	6	5	221	0	1	1	1	0	0	0	0	0	6640	1160	40	0		0	GORASP2	2	171804844	Intron	INS	-	TCGA-75-6211-01A-11D-1753-08	748198	171804844	71394529	118	168600											
WIPF1	7456	broad.mit.edu	37	chr2	175436881	175436881	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagggaaagggggaggagTgggcccggggctgggctgcc	22	9	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175436881	A	A	175436881	3	1	221	1	0	0	0	0	1	0	0	0	17494	1696	59	5	875	5	WIPF1	2	175436881	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	3632037	175436881	67762492	119	168601											
EVX2	344191	broad.mit.edu	37	chr2	176948097	176948097	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctttgccattgttttccttAagctgagcggcgccgaggcc	11	13	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176948097	T	T	176948097	2	4	221	1	0	0	0	0	0	0	0	1	5337	349	13	5		5	EVX2	2	176948097	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	1511216	176948097	66251276	120	168602											
TTN	7273	broad.mit.edu	37	chr2	179458826	179458826	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtagtctttatatgagtgcGatcatcttccagcacatcag	8	9	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179458826	T	T	179458826	3	4	221	1	0	0	0	0	1	0	0	0	16861	1058	37	3	49949	3	TTN	2	179458826	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2510729	179458826	63740547	121	168603											
TTN	7273	broad.mit.edu	37	chr2	179466637	179466637	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcgggtatgtcatgaactCcatcctattagaaaaggaga	9	8	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179466637	T	T	179466637	3	4	221	1	0	0	0	0	1	0	0	0	16861	855	30	4	52731	4	TTN	2	179466637	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7811	179466637	63732736	122	168604											
TTN	7273	broad.mit.edu	37	chr2	179614227	179614227	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccttactgaatattctttTacatttgtccagggagtaaa	6	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179614227	C	C	179614227	2	2	221	1	0	0	0	0	0	0	0	1	16861	1741	61	5		5	TTN	2	179614227	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	147590	179614227	63585146	123	168605											
ITGA4	3676	broad.mit.edu	37	chr2	182360445	182360445	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtaaactgaaaaaacaaaCgcatttctctccttaaggaa	5	8	1	1	rs139960499	by1000genomes	TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182360445	T	T	182360445	1	4	221	0	1	0	0	0	0	0	0	0	7948	551	19	4		4	ITGA4	2	182360445	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2746218	182360445	60838928	124	168606											
ZSWIM2	151112	broad.mit.edu	37	chr2	187704009	187704009	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatatcagagagacagttttGattgaattatcacactgaca	7	6	2	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187704009	C	C	187704009	1	2	221	0	1	0	0	0	0	0	0	0	18370	1305	45	4		4	ZSWIM2	2	187704009	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	5343564	187704009	55495364	125	168607											
COL3A1	1281	broad.mit.edu	37	chr2	189868727	189868727	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtaacccaggacccccagGtcccagcggttctccaggca	12	16	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	189868727	C	C	189868727	3	2	221	1	0	0	0	0	1	0	0	0	3720	1261	44	4	2835	4	COL3A1	2	189868727	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2164718	189868727	53330646	126	168608											
COL3A1	1281	broad.mit.edu	37	chr2	189876399	189876399	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtctttgaatatcgaacaCgcaaggctgtgagactacct	9	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189876399	A	A	189876399	3	1	221	1	0	0	0	0	1	0	0	0	3720	536	19	3	4502	3	COL3A1	2	189876399	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7672	189876399	53322974	127	168609											
COL5A2	1290	broad.mit.edu	37	chr2	189940032	189940032	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccaagtgtctggcatgtgGtgagtgctctgtaaatgttt	12	6	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189940032	A	A	189940032	1	1	221	0	1	0	0	0	0	0	0	0	3729	1276	44	4		4	COL5A2	2	189940032	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	63633	189940032	53259341	128	168610											
DNAH7	56171	broad.mit.edu	37	chr2	196912041	196912041	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgttgccaggggctctaacaTgggtaacacgtaatggttag	13	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196912041	A	A	196912041	1	1	221	0	1	0	0	0	0	0	0	0	4646	1479	51	5		5	DNAH7	2	196912041	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	6972009	196912041	46287332	129	168611											
PGAP1	80055	broad.mit.edu	37	chr2	197777816	197777816	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcataattgcggctttgTatcatttttaaaatactaaa	6	5	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197777816	C	C	197777816	1	2	221	0	1	0	0	0	0	0	0	0	11872	1653	57	5		5	PGAP1	2	197777816	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	865775	197777816	45421557	130	168612											
FZD7	8324	broad.mit.edu	37	chr2	202899689	202899689	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttatgctccatgtatGcgcccgtgtgcaccgtgctc	9	13	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202899689	T	T	202899689	3	4	221	1	0	0	0	0	1	0	0	0	6195	1319	46	3	321	3	FZD7	2	202899689	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	5121873	202899689	40299684	131	168613											
ABI2	10152	broad.mit.edu	37	chr2	204259513	204259513	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaacccgtaatatggctccCtcgcagcagagccctgtgag	10	15	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	204259513	G	G	204259513	2	3	221	1	0	0	0	0	0	0	0	1	89	668	24	4		4	ABI2	2	204259513	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	1359824	204259513	38939860	132	168614											
PIKFYVE	200576	broad.mit.edu	37	chr2	209165672	209165672	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgattgcaggacagtgtgcaGttaaaagacctgtggaaaaa	12	5	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	209165672	C	C	209165672	3	2	221	1	0	0	0	0	1	0	0	0	12019	1020	36	4	1092	4	PIKFYVE	2	209165672	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	4906159	209165672	34033701	133	168615											
SPHKAP	80309	broad.mit.edu	37	chr2	228856146	228856146	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atctaaaagcttctgaagttCattctggatttattgttttt	6	5	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228856146	T	T	228856146	1	4	221	0	1	0	0	0	0	0	0	0	15166	841	29	4		4	SPHKAP	2	228856146	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	19690474	228856146	14343227	134	168616											
SP110	3431	broad.mit.edu	37	chr2	231072860	231072860	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	attcagcttttacttttggtCttcaaaccacattgctagaa	5	9	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	231072860	G	G	231072860	1	3	221	0	1	0	0	0	0	0	0	0	15075	928	32	4		4	SP110	2	231072860	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2216714	231072860	12126513	135	168617											
SP140	11262	broad.mit.edu	37	chr2	231175801	231175801	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagggtgtgagttctgtgCtgtgtctcatgcatgtgggc	16	6	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231175801	A	A	231175801	1	1	221	0	1	0	0	0	0	0	0	0	15076	812	28	3		3	SP140	2	231175801	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	102941	231175801	12023572	136	168618											
ALPPL2	251	broad.mit.edu	37	chr2	233274340	233274340	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacggagagacccacgcaGgcgaggacgtggcggtgttc	18	10	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233274340	A	A	233274340	3	1	221	1	0	0	0	0	1	0	0	0	549	1000	35	4	1399	4	ALPPL2	2	233274340	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2098539	233274340	9925033	137	168619											
CHRND	1144	broad.mit.edu	37	chr2	233391241	233391241	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcgctgaccctccccaggcAgctgggggctgaacgaggag	16	13	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233391241	T	T	233391241	3	4	221	1	0	0	0	0	1	0	0	0	3425	188	7	5	61	5	CHRND	2	233391241	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	116901	233391241	9808132	138	168620											
UGT1A8	54576	broad.mit.edu	37	chr2	234557405	234557405	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggggtgagccaccacaccCagcctggatgccatgacttt	11	14	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234557405	T	T	234557405	1	4	221	0	1	0	0	0	0	0	0	0	17077	609	21	4		4	UGT1A8	2	234557405	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1166164	234557405	8641968	139	168621											
UGT1A5	54579	broad.mit.edu	37	chr2	234675671	234675671	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaactgaaaatttttcttcTggctctaggaatttgaagcc	7	7	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234675671	G	G	234675671	1	3	221	0	1	0	0	0	0	0	0	0	17074	1595	55	5		5	UGT1A5	2	234675671	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	118266	234675671	8523702	140	168622											
TMEM40	55287	broad.mit.edu	37	chr3	12779932	12779932	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaggctaagtggacctggGgctcctgtttctcagagcca	12	12	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12779932	T	T	12779932	1	4	221	0	1	0	0	0	0	0	0	0	16286	1247	43	2		2	TMEM40	3	12779932	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08		12779932	185242498	141	168623											
GRIP2	80852	broad.mit.edu	37	chr3	14552931	14552931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccctacctgtgtgccaCgctgcctttcttgatgtcgg	11	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14552931	A	A	14552931	3	1	221	1	0	0	0	0	1	0	0	0	6854	536	19	3	1393	3	GRIP2	3	14552931	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1772999	14552931	183469499	142	168624											
ZCWPW2	152098	broad.mit.edu	37	chr3	28555552	28555552	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatttttgtttttgtgttaTagaagcagacttctaaaaat	6	3	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28555552	A	A	28555552	1	1	221	0	1	0	0	0	0	0	0	0	17724	1421	49	5		5	ZCWPW2	3	28555552	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	14002621	28555552	169466878	143	168625											
TTC21A	199223	broad.mit.edu	37	chr3	39174562	39174562	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttggacctccagtctcGgatactgaagcgagttccac	11	13	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39174562	T	T	39174562	3	4	221	1	0	0	0	0	1	0	0	0	16813	1116	39	1	2684	1	TTC21A	3	39174562	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	10619010	39174562	158847868	144	168626											
PTPRG	5793	broad.mit.edu	37	chr3	62253061	62253062	+	Intron	INS	-	T	T													aattatccattttatttctgINStttttttttcttatcttcta							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62253062	T	T	62253061	6	5	221	0	1	1	1	0	0	0	0	0	12910	1392	48	0		0	PTPRG	3	62253061	Intron	INS	-	TCGA-75-6211-01A-11D-1753-08	23078499	62253061	135769369	145	168627											
CADPS	8618	broad.mit.edu	37	chr3	62467264	62467264	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaataaacaatattgtcTctgtatgatcagcaaaatat	5	6	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62467264	C	C	62467264	1	2	221	0	1	0	0	0	0	0	0	0	2596	1566	54	5		5	CADPS	3	62467264	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	214203	62467264	135555166	146	168628											
CADPS	8618	broad.mit.edu	37	chr3	62739044	62739044	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctttttttaaaaaaatcaaGaagtatctcatagaagttgg	6	5	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62739044	T	T	62739044	1	4	221	0	1	0	0	0	0	0	0	0	2596	957	33	3		3	CADPS	3	62739044	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	271780	62739044	135283386	147	168629											
ROBO2	6092	broad.mit.edu	37	chr3	77612555	77612555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatgtcacctgaactatcCtgctgttttattaaagacat	5	8	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77612555	A	A	77612555	1	1	221	0	1	0	0	0	0	0	0	0	13625	696	24	2		2	ROBO2	3	77612555	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	14873511	77612555	120409875	148	168630											
CRYBG3	131544	broad.mit.edu	37	chr3	97595800	97595800	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaaggcttgatagcacAtgaaaatagacttcctacat	8	7	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97595800	T	T	97595800	1	4	221	0	1	0	0	0	0	0	0	0	3945	232	8	5		5	CRYBG3	3	97595800	5'Flank	SNP	A	TCGA-75-6211-01A-11D-1753-08	19983245	97595800	100426630	149	168631											
BBX	56987	broad.mit.edu	37	chr3	107510242	107510242	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataatttatataggtttaaAcaacagcactagacttatgt	5	5	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107510242	G	G	107510242	1	3	221	0	1	0	0	0	0	0	0	0	1348	58	2	5		5	BBX	3	107510242	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	9914442	107510242	90512188	150	168632											
ZBTB20	26137	broad.mit.edu	37	chr3	114649692	114649692	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggagtttgatgatgttgCagcagaaaagggtggggagg	19	2	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114649692	T	T	114649692	1	4	221	0	1	0	0	0	0	0	0	0	17655	725	25	4		4	ZBTB20	3	114649692	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	7139450	114649692	83372738	151	168633											
CHCHD6	84303	broad.mit.edu	37	chr3	126486092	126486092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattatctgtgcggggctgGggatagtgtctgtcaggttg	16	5	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126486092	T	T	126486092	1	4	221	0	1	0	0	0	0	0	0	0	3351	1247	43	2		2	CHCHD6	3	126486092	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	11836400	126486092	71536338	152	168634											
AMOTL2	51421	broad.mit.edu	37	chr3	134084613	134084613	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagggtgtgcagcagtccCattgcctgcacacaggccag	13	13	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134084613	T	T	134084613	1	4	221	0	1	0	0	0	0	0	0	0	584	609	21	4		4	AMOTL2	3	134084613	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	7598521	134084613	63937817	153	168635											
ZBTB38	253461	broad.mit.edu	37	chr3	141163939	141163939	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atggagatgagtgaagtgttCgatgacgcaagtgaccagga	15	5	0	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141163939	T	T	141163939	2	4	221	1	0	0	0	0	0	0	0	1	17665	883	31	4		4	ZBTB38	3	141163939	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	7079326	141163939	56858491	154	168636											
WDR49	151790	broad.mit.edu	37	chr3	167246862	167246862	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatattccagattttcaacCatccatcaagatctcctgtg	4	12	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167246862	A	A	167246862	3	1	221	1	0	0	0	0	1	0	0	0	17429	595	21	2	789	2	WDR49	3	167246862	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	26082923	167246862	30775568	155	168637											
SAMD7	344658	broad.mit.edu	37	chr3	169646344	169646344	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcttcattcgcagccttcCaggttgttcagactatgctc	8	13	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169646344	T	T	169646344	3	4	221	1	0	0	0	0	1	0	0	0	13935	594	21	4	1037	4	SAMD7	3	169646344	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2399482	169646344	28376086	156	168638											
ECE2	9718	broad.mit.edu	37	chr3	183994288	183994288	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatggtggagtacaaacgggCcacgcttcgggatgaagacg	16	8	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	183994288	G	G	183994288	1	3	221	0	1	0	0	0	0	0	0	0	4930	739	26	4		4	ECE2	3	183994288	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	14347944	183994288	14028142	157	168639											
C3orf70	285382	broad.mit.edu	37	chr3	184800747	184800747	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaggatccaccagacaaaggTacaaaagctcggcgtgggtc	12	10	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184800747	A	A	184800747	1	1	221	0	1	0	0	0	0	0	0	0	2264	1653	57	5		5	C3orf70	3	184800747	3'UTR	SNP	T	TCGA-75-6211-01A-11D-1753-08	806459	184800747	13221683	158	168640											
IL1RAP	3556	broad.mit.edu	37	chr3	190347104	190347104	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tccatagctcttgagtcactCtcaaatgctttgattttctt	5	10	4	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190347104	A	A	190347104	1	1	221	0	1	0	0	0	0	0	0	0	7730	928	32	3		3	IL1RAP	3	190347104	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5546357	190347104	7675326	159	168641											
ABLIM2	84448	broad.mit.edu	37	chr4	8000404	8000404	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	caccttttgccaccacatggGaggctgggagtctgcaggtc	13	12	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8000404	C	C	8000404	1	2	221	0	1	0	0	0	0	0	0	0	95	1189	41	4		4	ABLIM2	4	8000404	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08		8000404	183153872	160	168642											
SLIT2	9353	broad.mit.edu	37	chr4	20611881	20611881	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttaatgcctaatatatcagGatttgtcattgaccaatagt	7	6	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20611881	T	T	20611881	1	4	221	0	1	0	0	0	0	0	0	0	14854	1189	41	3		3	SLIT2	4	20611881	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	12611477	20611881	170542395	161	168643											
PPARGC1A	10891	broad.mit.edu	37	chr4	23814337	23814337	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaaaagaagaaaccctaCtttaaaataaaagtgagctc	6	7	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23814337	A	A	23814337	1	1	221	0	1	0	0	0	0	0	0	0	12396	580	20	3		3	PPARGC1A	4	23814337	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3202456	23814337	167339939	162	168644											
PCDH7	5099	broad.mit.edu	37	chr4	30724495	30724495	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcgaccagaacaagaaaaAgtacttcttgcacacctcga	9	11	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30724495	C	C	30724495	3	2	221	1	0	0	0	0	1	0	0	0	11610	72	3	5	1453	5	PCDH7	4	30724495	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	6910158	30724495	160429781	163	168645											
TBC1D1	23216	broad.mit.edu	37	chr4	38051223	38051223	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtgtgtctgatctgctGtgtgtttgctcccaggagcc	13	10	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38051223	T	T	38051223	1	4	221	0	1	0	0	0	0	0	0	0	15716	1392	48	3		3	TBC1D1	4	38051223	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	7326728	38051223	153103053	164	168646											
SRD5A3	79644	broad.mit.edu	37	chr4	56212671	56212671	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccgctatgggaaaaccaaGtgtggggagccgtcgcgccc	14	12	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56212671	A	A	56212671	2	1	221	1	0	0	0	0	0	0	0	1	15258	1020	36	4		4	SRD5A3	4	56212671	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	18161448	56212671	134941605	165	168647											
EXOC1	55763	broad.mit.edu	37	chr4	56726475	56726475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtattacacctcttttaGtatcagctactaggcacctg	6	10	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56726475	T	T	56726475	1	4	221	0	1	0	0	0	0	0	0	0	5343	1044	36	3		3	EXOC1	4	56726475	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	513804	56726475	134427801	166	168648											
LPHN3	23284	broad.mit.edu	37	chr4	62812576	62812576	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaattttctatctcattaGtactaactaatttaagtaga	3	5	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62812576	C	C	62812576	1	2	221	0	1	0	0	0	0	0	0	0	9004	1044	36	4		4	LPHN3	4	62812576	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	6086101	62812576	128341700	167	168649											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68956382	68956382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggtaaaacaaacaaaaGtctcatggttaaaggtaata	8	4	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68956382	T	T	68956382	1	4	221	0	1	0	0	0	0	0	0	0	16366	1044	36	3		3	TMPRSS11F	4	68956382	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	6143806	68956382	122197894	168	168650											
ANKRD17	26057	broad.mit.edu	37	chr4	74123893	74123893	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aagcctggcccctaagagatCaacccactggaatctgtccc	8	15	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74123893	G	G	74123893	1	3	221	0	1	0	0	0	0	0	0	0	646	841	29	4		4	ANKRD17	4	74123893	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5167511	74123893	117030383	169	168651											
CCDC158	339965	broad.mit.edu	37	chr4	77288728	77288728	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggagctttgtgatctctgCattggtagcctcgatggctc	13	10	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77288728	A	A	77288728	3	1	221	1	0	0	0	0	1	0	0	0	2817	710	25	3	1848	3	CCDC158	4	77288728	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3164835	77288728	113865548	170	168652											
AGPAT9	84803	broad.mit.edu	37	chr4	84518075	84518075	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcctgaaggtaagaatGggcctgcctcccgagctata	10	10	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84518075	T	T	84518075	1	4	221	0	1	0	0	0	0	0	0	0	392	1363	47	2		2	AGPAT9	4	84518075	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	7229347	84518075	106636201	171	168653											
PKD2	5311	broad.mit.edu	37	chr4	88959554	88959554	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcagaaatggatcctgctCtatcccccaggacttgagag	10	11	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88959554	G	G	88959554	3	3	221	1	0	0	0	0	1	0	0	0	12061	913	32	4	1009	4	PKD2	4	88959554	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	4441479	88959554	102194722	172	168654											
MANBA	4126	broad.mit.edu	37	chr4	103644031	103644031	+	Frame_Shift_Del	DEL	C	-	-													gtttgagagaccattaccttCcgaacaaagttgacatggca							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	103644031	-	-	103644031	7	5	221	1	0	1	0	1	0	0	0	0	9311	842	30	0	2149	0	MANBA	4	103644031	Frame_Shift_Del	DEL	C	TCGA-75-6211-01A-11D-1753-08	14684477	103644031	87510245	173	168655											
ANK2	287	broad.mit.edu	37	chr4	114199556	114199556	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagtttccaggcatcctggTagcttcagggcagctaaccc	10	13	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114199556	G	G	114199556	1	3	221	0	1	0	0	0	0	0	0	0	621	1653	57	5		5	ANK2	4	114199556	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	10555525	114199556	76954720	174	168656											
SCLT1	132320	broad.mit.edu	37	chr4	129867262	129867262	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaatctttggtgcatttcttCcagttttctgtaatcactct	6	9	5	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129867262	A	A	129867262	4	1	221	1	0	0	0	0	0	1	0	0	14019	864	30	3	751	3	SCLT1	4	129867262	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	15667706	129867262	61287014	175	168657											
RBM46	166863	broad.mit.edu	37	chr4	155720237	155720237	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtaacactagctaaacCagtaaataaagaaaacactt	6	7	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155720237	T	T	155720237	3	4	221	1	0	0	0	0	1	0	0	0	13248	594	21	4	933	4	RBM46	4	155720237	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	25852975	155720237	35434039	176	168658											
NEK1	4750	broad.mit.edu	37	chr4	170384541	170384541	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaataacttctcccactgTatgtcctataagaaaaatat	3	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170384541	A	A	170384541	3	1	221	1	0	0	0	0	1	0	0	0	10416	1638	57	5	1460	5	NEK1	4	170384541	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	14664304	170384541	20769735	177	168659											
SLC6A19	340024	broad.mit.edu	37	chr5	1201769	1201769	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtccagcgaccaccatgGtgaggctcgtgctgcccaac	12	16	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1201769	T	T	1201769	3	4	221	1	0	0	0	0	1	0	0	0	14796	1261	44	3	6	3	SLC6A19	5	1201769	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08		1201769	179713491	178	168660											
TRIO	7204	broad.mit.edu	37	chr5	14507306	14507306	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagatcagggcgcacctGggggaggttctggaagctgt	19	7	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14507306	T	T	14507306	2	4	221	1	0	0	0	0	0	0	0	1	16677	1335	47	2		2	TRIO	5	14507306	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	13305537	14507306	166407954	179	168661											
ZFR	51663	broad.mit.edu	37	chr5	32380377	32380377	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagtgtcacatgagccatTtgagagcttgttggcacttt	10	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32380377	C	C	32380377	1	2	221	0	1	0	0	0	0	0	0	0	17785	1856	64	5		5	ZFR	5	32380377	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	17873071	32380377	148534883	180	168662											
PRLR	5618	broad.mit.edu	37	chr5	35068324	35068324	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgtacttacctccaaCagatgagcatcaaatccttt	4	14	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35068324	T	T	35068324	2	4	221	1	0	0	0	0	0	0	0	1	12637	465	17	4		4	PRLR	5	35068324	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	2687947	35068324	145846936	181	168663											
FYB	2533	broad.mit.edu	37	chr5	39169404	39169404	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaagccatatatataatcAcaaaaactcatgctatgggg	7	9	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39169404	T	T	39169404	1	4	221	0	1	0	0	0	0	0	0	0	6184	174	6	5		5	FYB	5	39169404	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	4101080	39169404	141745856	182	168664											
DAB2	1601	broad.mit.edu	37	chr5	39390615	39390615	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacgtaaccaaatgcccgGttgtctgtcacatcacgggc	9	14	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39390615	A	A	39390615	2	1	221	1	0	0	0	0	0	0	0	1	4251	1252	44	4		4	DAB2	5	39390615	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	221211	39390615	141524645	183	168665											
GHR	2690	broad.mit.edu	37	chr5	42718832	42718832	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgacatacatgagggtaCctcagaggttgctcagccac	10	11	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42718832	T	T	42718832	3	4	221	1	0	0	0	0	1	0	0	0	6435	507	18	4	1257	4	GHR	5	42718832	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3328217	42718832	138196428	184	168666											
HCN1	348980	broad.mit.edu	37	chr5	45267396	45267396	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaatgacttgtttgatcAttttcttttaaaagccatta	6	5	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45267396	G	G	45267396	1	3	221	0	1	0	0	0	0	0	0	0	7062	232	8	5		5	HCN1	5	45267396	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	2548564	45267396	135647864	185	168667											
DEPDC1B	55789	broad.mit.edu	37	chr5	59983058	59983058	+	Intron	DEL	G	-	-													tccacggtctcattccactaGgggaaagaaagagaatggca							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59983058	-	-	59983058	6	5	221	0	1	1	0	1	0	0	0	0	4480	1015	35	0		0	DEPDC1B	5	59983058	Intron	DEL	G	TCGA-75-6211-01A-11D-1753-08	14715662	59983058	120932202	186	168668											
HMGCR	3156	broad.mit.edu	37	chr5	74652176	74652176	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatttatagatttgcacGtctacagaaacttcatacaa	4	7	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74652176	T	T	74652176	3	4	221	1	0	0	0	0	1	0	0	0	7298	1145	40	3	1943	3	HMGCR	5	74652176	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	14669118	74652176	106263084	187	168669											
YTHDC2	64848	broad.mit.edu	37	chr5	112927872	112927872	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagataagcagggatggGcaggtatacaatggcatttt	14	5	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112927872	T	T	112927872	2	4	221	1	0	0	0	0	0	0	0	1	17624	1190	42	3		3	YTHDC2	5	112927872	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	38275696	112927872	67987388	188	168670											
FBN2	2201	broad.mit.edu	37	chr5	127641204	127641204	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtcagcctctttcttaccTacacaggccccattgggtga	9	13	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	127641204	C	C	127641204	2	2	221	1	0	0	0	0	0	0	0	1	5760	1536	53	5		5	FBN2	5	127641204	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	14713332	127641204	53274056	189	168671											
PCDHA2	56146	broad.mit.edu	37	chr5	140175015	140175015	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcggtttcctctagagGgagcatctgatgcagatata	10	8	3	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140175015	T	T	140175015	4	4	221	1	0	0	0	0	0	1	0	0	11618	1233	43	2	468	2	PCDHA2	5	140175015	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	12533811	140175015	40740245	190	168672											
PCDHB2	56133	broad.mit.edu	37	chr5	140474663	140474663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaattggaccgggaggagCtgtgcggccccacagagccc	15	12	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140474663	A	A	140474663	3	1	221	1	0	0	0	0	1	0	0	0	11636	796	28	3	291	3	PCDHB2	5	140474663	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	299648	140474663	40440597	191	168673											
PCDHB12	56124	broad.mit.edu	37	chr5	140589646	140589646	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttctatcccggaggacatCccattcgtgctaaaatcttc	7	12	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140589646	T	T	140589646	2	4	221	1	0	0	0	0	0	0	0	1	11631	845	30	4		4	PCDHB12	5	140589646	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	114983	140589646	40325614	192	168674											
PCDHB12	56124	broad.mit.edu	37	chr5	140589974	140589974	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcccaggacccgcacctgCccctcgcctccctggtctcc	8	23	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140589974	T	T	140589974	3	4	221	1	0	0	0	0	1	0	0	0	11631	739	26	4	1497	4	PCDHB12	5	140589974	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	328	140589974	40325286	193	168675											
PCDHGA6	56109	broad.mit.edu	37	chr5	140753949	140753949	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctctgtgctcagagccCgcggtgtctggtgagtttta	15	9	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140753949	T	T	140753949	3	4	221	1	0	0	0	0	1	0	0	0	11652	652	23	4	301	4	PCDHGA6	5	140753949	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	163975	140753949	40161311	194	168676											
ITK	3702	broad.mit.edu	37	chr5	156679713	156679713	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgagtaccaggccacggGctgcagatcctgaatggagg	15	10	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156679713	T	T	156679713	1	4	221	0	1	0	0	0	0	0	0	0	7979	1218	42	3		3	ITK	5	156679713	3'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	15925764	156679713	24235547	195	168677											
EBF1	1879	broad.mit.edu	37	chr5	158141058	158141058	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtttgtgctttctcattacGatgaggaatctgagatcttt	9	6	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158141058	T	T	158141058	1	4	221	0	1	0	0	0	0	0	0	0	4920	1073	37	3		3	EBF1	5	158141058	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1461345	158141058	22774202	196	168678											
C5orf58	133874	broad.mit.edu	37	chr5	169673105	169673105	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatcccttgtttctaacagTttttctatctgatttcttat	4	8	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169673105	A	A	169673105	3	1	221	1	0	0	0	0	1	0	0	0	2336	1722	60	5	307	5	C5orf58	5	169673105	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	11532047	169673105	11242155	197	168679											
LCP2	3937	broad.mit.edu	37	chr5	169680125	169680125	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaaaacatgctctcttacctCttcctccgcgggggatgggg	11	12	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169680125	G	G	169680125	3	3	221	1	0	0	0	0	1	0	0	0	8764	922	32	4	374	4	LCP2	5	169680125	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7020	169680125	11235135	198	168680											
SLC34A1	6569	broad.mit.edu	37	chr5	176820729	176820729	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtccagagcagaggccaactCcagccagacccttggaaatg	11	13	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176820729	A	A	176820729	3	1	221	1	0	0	0	0	1	0	0	0	14681	855	30	3	1092	3	SLC34A1	5	176820729	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7140604	176820729	4094531	199	168681											
RIOK1	83732	broad.mit.edu	37	chr6	7393347	7393347	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctagtgaaaacagagacttGaagacagtcaaagagaagga	11	5	2	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7393347	T	T	7393347	3	4	221	1	0	0	0	0	1	0	0	0	13488	1281	45	3	93	3	RIOK1	6	7393347	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08		7393347	163721720	200	168682											
JARID2	3720	broad.mit.edu	37	chr6	15496943	15496943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggagcgcagtctggagaGgaatcggccgaagcgggcca	18	11	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15496943	A	A	15496943	3	1	221	1	0	0	0	0	1	0	0	0	8015	1000	35	4	1513	4	JARID2	6	15496943	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	8103596	15496943	155618124	201	168683											
CAP2	10486	broad.mit.edu	37	chr6	17539605	17539605	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggccacctccacttttcGagaatgaaggcaaaaaagag	10	10	0	3	rs147812744		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17539605	T	T	17539605	4	4	221	1	0	0	0	0	0	1	0	0	2646	1059	37	3	768	3	CAP2	6	17539605	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2042662	17539605	153575462	202	168684											
BTN3A3	10384	broad.mit.edu	37	chr6	26448954	26448954	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccctattcattccattgcAgagtggaggaaaatccagta	8	9	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26448954	T	T	26448954	5	4	221	1	0	0	0	0	0	0	1	0	1574	202	7	5	958	5	BTN3A3	6	26448954	Splice_Site	SNP	A	TCGA-75-6211-01A-11D-1753-08	8909349	26448954	144666113	203	168685											
OR10C1	442194	broad.mit.edu	37	chr6	29408195	29408195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccgctacccactgctgCtgagccaccgggtgtgtcta	10	17	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29408195	A	A	29408195	3	1	221	1	0	0	0	0	1	0	0	0	10992	796	28	3	405	3	OR10C1	6	29408195	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2959241	29408195	141706872	204	168686											
OR2H1	26716	broad.mit.edu	37	chr6	29430207	29430207	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcttatggagccactgccCaggcagtgctgaggattaac	11	12	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29430207	T	T	29430207	4	4	221	1	0	0	0	0	0	1	0	0	11095	595	21	4	663	4	OR2H1	6	29430207	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	22012	29430207	141684860	205	168687											
GABBR1	2550	broad.mit.edu	37	chr6	29599392	29599392	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaacctaaggggtgagtcgGggaggcatacagagaggaat	17	6	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29599392	A	A	29599392	1	1	221	0	1	0	0	0	0	0	0	0	6215	1247	43	4		4	GABBR1	6	29599392	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	169185	29599392	141515675	206	168688											
COL11A2	1302	broad.mit.edu	37	chr6	33138073	33138073	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaagaccagacacattggTctcaagggacaggggctgag	14	9	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33138073	A	A	33138073	1	1	221	0	1	0	0	0	0	0	0	0	3700	1682	58	5		5	COL11A2	6	33138073	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	3538681	33138073	137976994	207	168689											
DAAM2	23500	broad.mit.edu	37	chr6	39869018	39869018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaacccagctaacctcaGgggctgagcccagcatgctc	10	15	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39869018	T	T	39869018	1	4	221	0	1	0	0	0	0	0	0	0	4249	1015	35	2		2	DAAM2	6	39869018	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	6730945	39869018	131246049	208	168690											
GPR115	221393	broad.mit.edu	37	chr6	47682320	47682320	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtgcatcgtgaatataGcagtgtcccttctgactgcc	10	11	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47682320	T	T	47682320	3	4	221	1	0	0	0	0	1	0	0	0	6697	971	34	3	1357	3	GPR115	6	47682320	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	7813302	47682320	123432747	209	168691											
TFAP2D	83741	broad.mit.edu	37	chr6	50683135	50683135	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaccgactttattaacCtgcacaatgcgcgggcgctc	9	15	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50683135	A	A	50683135	3	1	221	1	0	0	0	0	1	0	0	0	15913	680	24	2	352	2	TFAP2D	6	50683135	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3000815	50683135	120431932	210	168692											
TFAP2D	83741	broad.mit.edu	37	chr6	50696702	50696702	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctccccacctgagtgcctCaatgcttcactcttgggagg	9	15	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50696702	T	T	50696702	2	4	221	1	0	0	0	0	0	0	0	1	15913	813	29	4		4	TFAP2D	6	50696702	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	13567	50696702	120418365	211	168693											
GCLC	2729	broad.mit.edu	37	chr6	53385814	53385814	+	Intron	DEL	T	-	-													ttttgctatagtctgctcaaTttttaagtttttaaagttgc							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53385814	-	-	53385814	6	5	221	0	1	1	0	1	0	0	0	0	6357	1508	52	0		0	GCLC	6	53385814	Intron	DEL	T	TCGA-75-6211-01A-11D-1753-08	2689112	53385814	117729253	212	168694											
HMGCLL1	54511	broad.mit.edu	37	chr6	55406914	55406914	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tactattttaacaaactcagGgagtccagataactgggatg	9	7	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55406914	A	A	55406914	3	1	221	1	0	0	0	0	1	0	0	0	7297	1232	43	4	921	4	HMGCLL1	6	55406914	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2021100	55406914	115708153	213	168695											
COL19A1	1310	broad.mit.edu	37	chr6	70890390	70890390	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagatataggtttccctgGaccagaaggaccctcaggaa	12	9	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70890390	T	T	70890390	3	4	221	1	0	0	0	0	1	0	0	0	3708	1174	41	3	2920	3	COL19A1	6	70890390	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	15483476	70890390	100224677	214	168696											
MTO1	25821	broad.mit.edu	37	chr6	74183111	74183111	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggaagcacagtatatgcaGagagtgtgattctgactact	11	6	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74183111	T	T	74183111	4	4	221	1	0	0	0	0	0	1	0	0	10047	943	33	3	573	3	MTO1	6	74183111	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3292721	74183111	96931956	215	168697											
SENP6	26054	broad.mit.edu	37	chr6	76405596	76405596	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttcttttttctataaacgcCttaatcagagagagaggaga	9	6	3	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76405596	G	G	76405596	3	3	221	1	0	0	0	0	1	0	0	0	14163	681	24	4	2218	4	SENP6	6	76405596	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2222485	76405596	94709471	216	168698											
IMPG1	3617	broad.mit.edu	37	chr6	76735002	76735002	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtacaatagaaaagaaggaaGaggtggtgaaagagaacttg	14	2	0	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76735002	T	T	76735002	1	4	221	0	1	0	0	0	0	0	0	0	7798	957	33	3		3	IMPG1	6	76735002	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	329406	76735002	94380065	217	168699											
C6orf165	154313	broad.mit.edu	37	chr6	88123581	88123581	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatccctggacactattaaGatgcaagtctacttcgatat	6	11	1	1	rs140621996		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88123581	T	T	88123581	3	4	221	1	0	0	0	0	1	0	0	0	2364	933	33	3	256	3	C6orf165	6	88123581	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	11388579	88123581	82991486	218	168700											
PM20D2	135293	broad.mit.edu	37	chr6	89871553	89871553	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttcctggaattcatccatAttttcacattggatctaatg	7	8	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89871553	G	G	89871553	3	3	221	1	0	0	0	0	1	0	0	0	12224	449	16	5	1122	5	PM20D2	6	89871553	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	1747972	89871553	81243514	219	168701											
LAMA4	3910	broad.mit.edu	37	chr6	112463224	112463224	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttaccagaatgggcattGttttggtttgtttgcctagg	13	5	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112463224	A	A	112463224	1	1	221	0	1	0	0	0	0	0	0	0	8680	1392	48	4		4	LAMA4	6	112463224	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	22591671	112463224	58651843	220	168702											
COL10A1	1300	broad.mit.edu	37	chr6	116441292	116441292	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggacatactcagaggagtAtaggccatttgactcggcat	12	8	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	116441292	G	G	116441292	3	3	221	1	0	0	0	0	1	0	0	0	3698	449	16	5	59	5	COL10A1	6	116441292	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	3978068	116441292	54673775	221	168703											
GPRC6A	222545	broad.mit.edu	37	chr6	117117030	117117030	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaaaaaaaaatcacaagTaaatttgtaaaaaaaattat	4	2	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117117030	G	G	117117030	1	3	221	0	1	0	0	0	0	0	0	0	6794	1653	57	5		5	GPRC6A	6	117117030	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	675738	117117030	53998037	222	168704											
TRDN	10345	broad.mit.edu	37	chr6	123698790	123698790	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	actggcgctgccttaccaccTgtttgaggctacagcattaa	9	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123698790	A	A	123698790	1	1	221	0	1	0	0	0	0	0	0	0	16592	1595	55	5		5	TRDN	6	123698790	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	6581760	123698790	47416277	223	168705											
BCLAF1	9774	broad.mit.edu	37	chr6	136599090	136599090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctagactcatctcttggaGcattctgtggtgcgattgtc	10	11	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136599090	T	T	136599090	3	4	221	1	0	0	0	0	1	0	0	0	1388	971	34	3	1873	3	BCLAF1	6	136599090	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	12900300	136599090	34515977	224	168706											
GRM1	2911	broad.mit.edu	37	chr6	146350653	146350653	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggacctcgtcctcaccacCatggtcgggctccttttgtt	10	14	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146350653	G	G	146350653	1	3	221	0	1	0	0	0	0	0	0	0	6862	609	21	4		4	GRM1	6	146350653	5'UTR	SNP	C	TCGA-75-6211-01A-11D-1753-08	9751563	146350653	24764414	225	168707											
NUP43	348995	broad.mit.edu	37	chr6	150057784	150057784	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgggagataacaatgacgtCaaaatcaaataaagtataat	8	4	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150057784	A	A	150057784	1	1	221	0	1	0	0	0	0	0	0	0	10860	841	29	3		3	NUP43	6	150057784	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3707131	150057784	21057283	226	168708											
RBM16	22828	broad.mit.edu	37	chr6	155113882	155113882	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctttccatccagggcccaGatagcctctatgaaatgact	7	13	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155113882	T	T	155113882	1	4	221	0	1	0	0	0	0	0	0	0	13226	957	33	3		3	RBM16	6	155113882	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	5056098	155113882	16001185	227	168709											
TIAM2	26230	broad.mit.edu	37	chr6	155458398	155458398	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatcctcccaggcatctGcttttctgtggtcagggggc	14	11	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155458398	T	T	155458398	3	4	221	1	0	0	0	0	1	0	0	0	16014	1319	46	3	1288	3	TIAM2	6	155458398	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	344516	155458398	15656669	228	168710											
TIAM2	26230	broad.mit.edu	37	chr6	155500380	155500380	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attctgtttaaatttggcgtCtagtttggaaacagtctcta	8	6	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155500380	T	T	155500380	1	4	221	0	1	0	0	0	0	0	0	0	16014	928	32	4		4	TIAM2	6	155500380	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	41982	155500380	15614687	229	168711											
TMEM181	57583	broad.mit.edu	37	chr6	159004970	159004971	+	Intron	INS	-	T	T													aggtcacatggattactttgINStttttttttcttcagctaaa							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159004971	T	T	159004970	6	5	221	0	1	1	1	0	0	0	0	0	16223	1392	48	0		0	TMEM181	6	159004970	Intron	INS	-	TCGA-75-6211-01A-11D-1753-08	3504590	159004970	12110097	230	168712											
IGF2R	3482	broad.mit.edu	37	chr6	160499257	160499257	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcctaagctgttaaggaccAgcgagtgcgactttgtgttc	12	10	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160499257	T	T	160499257	3	4	221	1	0	0	0	0	1	0	0	0	7646	188	7	5	5487	5	IGF2R	6	160499257	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	1494287	160499257	10615810	231	168713											
AGPAT4	56895	broad.mit.edu	37	chr6	161575192	161575192	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctacatacaaaatacttctCggggtagtcccggaggtgct	10	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161575192	A	A	161575192	4	1	221	1	0	0	0	0	0	1	0	0	389	893	31	3	661	3	AGPAT4	6	161575192	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1075935	161575192	9539875	232	168714											
MLLT4	4301	broad.mit.edu	37	chr6	168307845	168307845	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acccgttgtgctttctctccAtgtagagcaccactaggctg	9	13	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168307845	T	T	168307845	1	4	221	0	1	0	0	0	0	0	0	0	9722	232	8	5		5	MLLT4	6	168307845	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	6732653	168307845	2807222	233	168715											
PRPS1L1	221823	broad.mit.edu	37	chr7	18067064	18067064	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacctgctatagagagcatAtttgcaacaagcttggcaga	10	9	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18067064	G	G	18067064	2	3	221	1	0	0	0	0	0	0	0	1	12685	446	16	5		5	PRPS1L1	7	18067064	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08		18067064	141071599	234	168716											
PDE1C	5137	broad.mit.edu	37	chr7	31904714	31904714	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctgaaagagagcagtaaGgttaattaactagtgacttc	10	5	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31904714	T	T	31904714	1	4	221	0	1	0	0	0	0	0	0	0	11729	1015	35	2		2	PDE1C	7	31904714	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	13837650	31904714	127233949	235	168717											
ELMO1	9844	broad.mit.edu	37	chr7	37156733	37156733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttcacagactgtccaaCctgcgggtcactcagcctac	9	15	3	1	rs115122191	by1000genomes	TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37156733	A	A	37156733	1	1	221	0	1	0	0	0	0	0	0	0	5107	522	18	3		3	ELMO1	7	37156733	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5252019	37156733	121981930	236	168718											
GPR141	353345	broad.mit.edu	37	chr7	37780793	37780793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggttgcattttataaCgaaatcttcttgagtgtaac	8	6	2	1	rs146749644	byFrequency	TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37780793	A	A	37780793	3	1	221	1	0	0	0	0	1	0	0	0	6714	535	19	3	800	3	GPR141	7	37780793	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	624060	37780793	121357870	237	168719											
CDK13	8621	broad.mit.edu	37	chr7	40127867	40127867	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggatgacagcagaaccaacAcaccccagggtgtgctgcca	11	13	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40127867	G	G	40127867	3	3	221	1	0	0	0	0	1	0	0	0	3159	159	6	5	3218	5	CDK13	7	40127867	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	2347074	40127867	119010796	238	168720											
DBNL	28988	broad.mit.edu	37	chr7	44092438	44092438	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctttgggggaggcctgGgtcaacctgggcatccttgt	17	9	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44092438	T	T	44092438	1	4	221	0	1	0	0	0	0	0	0	0	4288	1247	43	2		2	DBNL	7	44092438	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	3964571	44092438	115046225	239	168721											
POLM	27434	broad.mit.edu	37	chr7	44119252	44119252	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacagggctgggaagggccTtgagcaccgaggctgctctg	17	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44119252	C	C	44119252	3	2	221	1	0	0	0	0	1	0	0	0	12301	1609	56	5	956	5	POLM	7	44119252	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	26814	44119252	115019411	240	168722											
MYL7	58498	broad.mit.edu	37	chr7	44180486	44180486	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagaggcaaggtcagggtaGaaggggggtatgtatgtggg	21	2	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44180486	T	T	44180486	1	4	221	0	1	0	0	0	0	0	0	0	10147	957	33	3		3	MYL7	7	44180486	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	61234	44180486	114958177	241	168723											
NPC1L1	29881	broad.mit.edu	37	chr7	44560666	44560666	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaactgctccaccgagggcCtcacagagcccatcgtgatg	12	14	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44560666	A	A	44560666	3	1	221	1	0	0	0	0	1	0	0	0	10666	681	24	2	1106	2	NPC1L1	7	44560666	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	380180	44560666	114577997	242	168724											
POM121L12	285877	broad.mit.edu	37	chr7	53104314	53104314	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtatctactttcacttGctcatccttgctctacctca	3	16	5	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53104314	T	T	53104314	1	4	221	0	1	0	0	0	0	0	0	0	12336	1334	46	3		3	POM121L12	7	53104314	3'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	8543648	53104314	106034349	243	168725											
SBDS	51119	broad.mit.edu	37	chr7	66460256	66460256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaggcccaggcccaggcCcgagggagggggctactcac	16	15	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66460256	A	A	66460256	1	1	221	0	1	0	0	0	0	0	0	0	13969	638	22	2		2	SBDS	7	66460256	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	13355942	66460256	92678407	244	168726											
STAG3L4	64940	broad.mit.edu	37	chr7	66772771	66772771	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcagtgtaggcaagtgGgcttaacgtccttgggcttt	16	7	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66772771	C	C	66772771	1	2	221	0	1	0	0	0	0	0	0	0	15365	1247	43	4		4	STAG3L4	7	66772771	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	312515	66772771	92365892	245	168727											
AUTS2	26053	broad.mit.edu	37	chr7	69364220	69364220	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctatattttgggtgtgacCctagatacctttgtaaccac	8	10	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69364220	T	T	69364220	1	4	221	0	1	0	0	0	0	0	0	0	1230	638	22	4		4	AUTS2	7	69364220	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2591449	69364220	89774443	246	168728											
AUTS2	26053	broad.mit.edu	37	chr7	69583145	69583145	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caggacagaacagctgcaggGacagtgacagtgaaagtgcc	14	9	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69583145	T	T	69583145	3	4	221	1	0	0	0	0	1	0	0	0	1230	1174	41	3	560	3	AUTS2	7	69583145	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	218925	69583145	89555518	247	168729											
WBSCR17	64409	broad.mit.edu	37	chr7	70885786	70885786	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcatctgagttccagccttCccaaagcccagccttaagta	7	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70885786	T	T	70885786	1	4	221	0	1	0	0	0	0	0	0	0	17391	870	30	4		4	WBSCR17	7	70885786	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1302641	70885786	88252877	248	168730											
WBSCR17	64409	broad.mit.edu	37	chr7	71142242	71142242	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttggaccaggggccgcTggagaaccacacagcaatat	12	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71142242	A	A	71142242	3	1	221	1	0	0	0	0	1	0	0	0	17391	1580	55	5	1485	5	WBSCR17	7	71142242	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	256456	71142242	87996421	249	168731											
WBSCR27	155368	broad.mit.edu	37	chr7	73256416	73256416	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtcggggatgccatgcgCggccctgacccgcgcccgca	15	17	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73256416	A	A	73256416	3	1	221	1	0	0	0	0	1	0	0	0	17393	768	27	3	702	3	WBSCR27	7	73256416	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2114174	73256416	85882247	250	168732											
CLIP2	7461	broad.mit.edu	37	chr7	73795260	73795260	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctggctctgccttcctGctgggtcacattttggtttg	12	11	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73795260	T	T	73795260	1	4	221	0	1	0	0	0	0	0	0	0	3565	1334	46	3		3	CLIP2	7	73795260	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	538844	73795260	85343403	251	168733											
PTPN12	5782	broad.mit.edu	37	chr7	77261701	77261701	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agattcacctcctcccctacCtgaaagaactcctgaatcgt	5	15	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77261701	T	T	77261701	3	4	221	1	0	0	0	0	1	0	0	0	12887	681	24	4	2087	4	PTPN12	7	77261701	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3466441	77261701	81876962	252	168734											
RSBN1L	222194	broad.mit.edu	37	chr7	77378976	77378976	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatttggataccaagaactaTgattccaaaattccagagaa	6	7	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77378976	C	C	77378976	2	2	221	1	0	0	0	0	0	0	0	1	13808	1471	51	5		5	RSBN1L	7	77378976	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	117275	77378976	81759687	253	168735											
CACNA2D1	781	broad.mit.edu	37	chr7	81693536	81693536	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttttttaacctatcaaaCctttcttagtcccaccatac	1	13	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81693536	T	T	81693536	1	4	221	0	1	0	0	0	0	0	0	0	2574	522	18	4		4	CACNA2D1	7	81693536	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	4314560	81693536	77445127	254	168736											
PCLO	27445	broad.mit.edu	37	chr7	82791757	82791757	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcgatctgtctcctctccTcttcgctcagctggctcaaa	8	16	6	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82791757	C	C	82791757	3	2	221	1	0	0	0	0	1	0	0	0	11677	1551	54	5	15393	5	PCLO	7	82791757	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1098221	82791757	76346906	255	168737											
CROT	54677	broad.mit.edu	37	chr7	87022230	87022230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaatataagcatctgtagGcctagtaaaatgttctttta	6	6	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87022230	T	T	87022230	1	4	221	0	1	0	0	0	0	0	0	0	3926	1218	42	3		3	CROT	7	87022230	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	4230473	87022230	72116433	256	168738											
ANKIB1	54467	broad.mit.edu	37	chr7	92021501	92021501	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggcaaggatctgattgtAtatactttgtagtattgata	10	3	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	92021501	G	G	92021501	1	3	221	0	1	0	0	0	0	0	0	0	630	464	16	5		5	ANKIB1	7	92021501	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	4999271	92021501	67117162	257	168739											
OCM2	4951	broad.mit.edu	37	chr7	97614181	97614181	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattaacaaattaggtagGgatgggatgtggggttcccc	13	5	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97614181	T	T	97614181	1	4	221	0	1	0	0	0	0	0	0	0	10917	1247	43	2		2	OCM2	7	97614181	3'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	5592680	97614181	61524482	258	168740											
MUC17	140453	broad.mit.edu	37	chr7	100676470	100676470	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaggctagcaccacttcAacaactcctgctgactccaa	6	15	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100676470	C	C	100676470	2	2	221	1	0	0	0	0	0	0	0	1	10068	117	5	5		5	MUC17	7	100676470	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	3062289	100676470	58462193	259	168741											
RELN	5649	broad.mit.edu	37	chr7	103368703	103368703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaactaagtagcacacGtggtttactgctcaggtaag	11	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103368703	T	T	103368703	1	4	221	0	1	0	0	0	0	0	0	0	13328	1160	40	3		3	RELN	7	103368703	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2692233	103368703	55769960	260	168742											
DOCK4	9732	broad.mit.edu	37	chr7	111368560	111368560	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctctccttgcgcactggctCctccccgccgtagctcggca	10	19	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111368560	A	A	111368560	4	1	221	1	0	0	0	0	0	1	0	0	4729	864	30	3	233	3	DOCK4	7	111368560	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7999857	111368560	47770103	261	168743											
GPR85	54329	broad.mit.edu	37	chr7	112723599	112723599	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttctcaaaatatggctAtgggccacaattgctcagca	7	10	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112723599	T	T	112723599	1	4	221	0	1	0	0	0	0	0	0	0	6780	464	16	5		5	GPR85	7	112723599	3'UTR	SNP	A	TCGA-75-6211-01A-11D-1753-08	1355039	112723599	46415064	262	168744											
PPP1R3A	5506	broad.mit.edu	37	chr7	113522035	113522035	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaaggcaggcattgcagCatctttgaagcagaaatgga	12	6	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113522035	T	T	113522035	1	4	221	0	1	0	0	0	0	0	0	0	12472	725	25	4		4	PPP1R3A	7	113522035	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	798436	113522035	45616628	263	168745											
NDUFA5	4698	broad.mit.edu	37	chr7	123185620	123185620	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attctagaacgtcagttgtgTgtctctatgaaaccaaacac	7	9	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123185620	A	A	123185620	1	1	221	0	1	0	0	0	0	0	0	0	10363	1711	59	5		5	NDUFA5	7	123185620	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	9663585	123185620	35953043	264	168746											
AHCYL2	23382	broad.mit.edu	37	chr7	129053543	129053543	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacgtggtaagatcaagtaGctcattattgggggcttttt	12	5	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129053543	C	C	129053543	1	2	221	0	1	0	0	0	0	0	0	0	411	986	34	4		4	AHCYL2	7	129053543	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	5867923	129053543	30085120	265	168747											
FAM40B	57464	broad.mit.edu	37	chr7	129103845	129103845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcacttccttgctgagtgGgtttgacagtggtaaatttc	10	7	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129103845	T	T	129103845	1	4	221	0	1	0	0	0	0	0	0	0	5612	1247	43	2		2	FAM40B	7	129103845	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	50302	129103845	30034818	266	168748											
TMEM209	84928	broad.mit.edu	37	chr7	129842495	129842495	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgaagagagatgcaaGggcaagctctggaagagaac	15	6	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129842495	A	A	129842495	3	1	221	1	0	0	0	0	1	0	0	0	16257	1000	35	4	1525	4	TMEM209	7	129842495	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	738650	129842495	29296168	267	168749											
CPA4	51200	broad.mit.edu	37	chr7	129950739	129950739	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaaacatgggaatttcaaGggcttcatcgacctgcacag	9	10	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129950739	A	A	129950739	2	1	221	1	0	0	0	0	0	0	0	1	3824	991	35	4		4	CPA4	7	129950739	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	108244	129950739	29187924	268	168750											
CNTNAP2	26047	broad.mit.edu	37	chr7	147815474	147815474	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggccttttgattcaaacGtggaaggtttcctttgttcc	10	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147815474	A	A	147815474	1	1	221	0	1	0	0	0	0	0	0	0	3679	1160	40	4		4	CNTNAP2	7	147815474	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	17864735	147815474	11323189	269	168751											
GIMAP7	168537	broad.mit.edu	37	chr7	150209771	150209771	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaacagtgaaagtaccgaaTcctggctttcttctttcatc	7	11	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150209771	A	A	150209771	1	1	221	0	1	0	0	0	0	0	0	0	6448	1450	50	5		5	GIMAP7	7	150209771	5'Flank	SNP	T	TCGA-75-6211-01A-11D-1753-08	2394297	150209771	8928892	270	168752											
KCNH2	3757	broad.mit.edu	37	chr7	150649748	150649748	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtagccacactcggtagcaGgcgggccttcttccgtctcc	11	16	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150649748	T	T	150649748	3	4	221	1	0	0	0	0	1	0	0	0	8102	1000	35	2	2466	2	KCNH2	7	150649748	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	439977	150649748	8488915	271	168753											
GALNTL5	168391	broad.mit.edu	37	chr7	151680307	151680307	+	Intron	SNP	G	T	T													agatttccctctgtcacccaGgctggagtgcagtggtacca							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151680307	T	T	151680307	1	4	221	0	1	0	0	0	0	0	0	0	6286	1015	35	2		2	GALNTL5	7	151680307	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1030559	151680307	7458356	272	168754	705	2									
GALNTL5	168391	broad.mit.edu	37	chr7	151680312	151680312	+	Intron	SNP	G	T	T													tccctctgtcacccaggctgGagtgcagtggtaccatctcg							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151680312	T	T	151680312	1	4	221	0	1	0	0	0	0	0	0	0	6286	1189	41	3		3	GALNTL5	7	151680312	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	5	151680312	7458351	273	168755	705	2									
INSIG1	3638	broad.mit.edu	37	chr7	155095541	155095541	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatttttgccagctgataCccttctgtgaggagttgaat	9	7	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155095541	T	T	155095541	1	4	221	0	1	0	0	0	0	0	0	0	7835	507	18	4		4	INSIG1	7	155095541	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3415229	155095541	4043122	274	168756											
ESYT2	57488	broad.mit.edu	37	chr7	158534254	158534254	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccgcagctcctgggtggCgatgggcagcgagatgtccg	17	11	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158534254	A	A	158534254	3	1	221	1	0	0	0	0	1	0	0	0	5307	768	27	3	496	3	ESYT2	7	158534254	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3438713	158534254	604409	275	168757											
RP1L1	94137	broad.mit.edu	37	chr8	10470795	10470795	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcctttctggcagccgtggCgtgctgcctggcggagaccg	17	13	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10470795	G	G	10470795	2	3	221	1	0	0	0	0	0	0	0	1	13644	755	27	4		4	RP1L1	8	10470795	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08		10470795	135893227	276	168758											
CSGALNACT1	55790	broad.mit.edu	37	chr8	19297443	19297443	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcaatgcacatctccCtggaaaacaaaacacatgca	5	14	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19297443	G	G	19297443	5	3	221	1	0	0	0	0	0	0	1	0	3972	695	24	4	767	4	CSGALNACT1	8	19297443	Splice_Site	SNP	C	TCGA-75-6211-01A-11D-1753-08	8826648	19297443	127066579	277	168759											
PIWIL2	55124	broad.mit.edu	37	chr8	22137127	22137127	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccggatgcataggagtgGcatacagcttacctgtgtgc	12	10	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22137127	A	A	22137127	1	1	221	0	1	0	0	0	0	0	0	0	12053	1218	42	4		4	PIWIL2	8	22137127	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2839684	22137127	124226895	278	168760											
STC1	6781	broad.mit.edu	37	chr8	23711941	23711941	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttttgagccgccactcgGgatttcctggggctcacaga	13	11	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23711941	T	T	23711941	2	4	221	1	0	0	0	0	0	0	0	1	15393	1219	43	2		2	STC1	8	23711941	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	1574814	23711941	122652081	279	168761											
CDCA2	157313	broad.mit.edu	37	chr8	25341439	25341439	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccttttagataagaaataTagcttaatttttaagttact	5	4	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25341439	C	C	25341439	1	2	221	0	1	0	0	0	0	0	0	0	3116	1421	49	5		5	CDCA2	8	25341439	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	1629498	25341439	121022583	280	168762											
C8orf80	389643	broad.mit.edu	37	chr8	27886883	27886883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgatggcatctttcatcCgctcacacgcttttttgccc	6	14	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27886883	A	A	27886883	3	1	221	1	0	0	0	0	1	0	0	0	2465	652	23	1	348	1	C8orf80	8	27886883	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2545444	27886883	118477139	281	168763											
KIF13B	23303	broad.mit.edu	37	chr8	28956802	28956802	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtttcaagttattcaatTaaccaaacaaaaaaaaatta	2	5	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28956802	C	C	28956802	1	2	221	0	1	0	0	0	0	0	0	0	8345	1769	61	5		5	KIF13B	8	28956802	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	1069919	28956802	117407220	282	168764											
TEX15	56154	broad.mit.edu	37	chr8	30705647	30705647	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtaattaatattttatcaCagcttttcccaaaagaatta	4	6	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30705647	T	T	30705647	3	4	221	1	0	0	0	0	1	0	0	0	15901	478	17	4	7498	4	TEX15	8	30705647	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1748845	30705647	115658375	283	168765											
KCNU1	157855	broad.mit.edu	37	chr8	36694348	36694348	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccagctggaactgggacaCcggagacaacatcatctgct	10	13	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36694348	A	A	36694348	3	1	221	1	0	0	0	0	1	0	0	0	8163	507	18	3	1457	3	KCNU1	8	36694348	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	5988701	36694348	109669674	284	168766											
ADAM2	2515	broad.mit.edu	37	chr8	39624318	39624318	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcagcatctatttctgttcAgtttccagaaaaaaacgcat	5	9	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39624318	T	T	39624318	1	4	221	0	1	0	0	0	0	0	0	0	241	203	7	5		5	ADAM2	8	39624318	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	2929970	39624318	106739704	285	168767											
IDO2	169355	broad.mit.edu	37	chr8	39872871	39872871	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggactacatcctgtcatctgGacaggaccacttgctgacag	10	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39872871	T	T	39872871	3	4	221	1	0	0	0	0	1	0	0	0	7572	1174	41	3	1055	3	IDO2	8	39872871	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	248553	39872871	106491151	286	168768											
ZMAT4	79698	broad.mit.edu	37	chr8	40438627	40438627	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaatgttgagcctttagtCatcttactaaaaattacatc	5	7	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40438627	G	G	40438627	1	3	221	0	1	0	0	0	0	0	0	0	17820	841	29	4		4	ZMAT4	8	40438627	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	565756	40438627	105925395	287	168769											
CHRNB3	1142	broad.mit.edu	37	chr8	42565481	42565481	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaacaacaacaaaaatcaCaacttattttcacttcaact	0	10	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42565481	A	A	42565481	1	1	221	0	1	0	0	0	0	0	0	0	3423	493	17	3		3	CHRNB3	8	42565481	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2126854	42565481	103798541	288	168770											
C8orf22	492307	broad.mit.edu	37	chr8	49986879	49986879	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caaatgtgagaataaaagatCtgtctgctactgggtgagtt	11	5	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49986879	A	A	49986879	3	1	221	1	0	0	0	0	1	0	0	0	2444	912	32	3	230	3	C8orf22	8	49986879	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7421398	49986879	96377143	289	168771											
SNTG1	54212	broad.mit.edu	37	chr8	51621516	51621516	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatttcagcacaggatttaTctgctttgatgctgcaacaa	8	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51621516	C	C	51621516	3	2	221	1	0	0	0	0	1	0	0	0	14988	1435	50	5	1320	5	SNTG1	8	51621516	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1634637	51621516	94742506	290	168772											
SOX17	64321	broad.mit.edu	37	chr8	55370910	55370910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagtcccgtatccggcggcCgatgaacgctttcatggtgt	13	12	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55370910	A	A	55370910	3	1	221	1	0	0	0	0	1	0	0	0	15061	652	23	1	214	1	SOX17	8	55370910	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3749394	55370910	90993112	291	168773											
RP1	6101	broad.mit.edu	37	chr8	55537445	55537445	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acggcactatgacagttgagAtgaaagttcgattcagaata	10	6	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55537445	T	T	55537445	3	4	221	1	0	0	0	0	1	0	0	0	13643	333	12	5	1013	5	RP1	8	55537445	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	166535	55537445	90826577	292	168774											
GGH	8836	broad.mit.edu	37	chr8	63927974	63927974	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ataaatcaatgctttctcctCttcagattcagatttaaaat	3	8	5	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63927974	A	A	63927974	4	1	221	1	0	0	0	0	0	1	0	0	6421	922	32	3	86	3	GGH	8	63927974	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	8390529	63927974	82436048	293	168775											
PRDM14	63978	broad.mit.edu	37	chr8	70981356	70981356	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgttcccgcctgcattcCcgtccaattcgactcccaaa	5	19	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70981356	T	T	70981356	1	4	221	0	1	0	0	0	0	0	0	0	12561	638	22	4		4	PRDM14	8	70981356	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	7053382	70981356	75382666	294	168776											
TRPA1	8989	broad.mit.edu	37	chr8	72981518	72981518	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctatacactataaaactcaGtgccaagtgcaaatgaaatc	5	10	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72981518	C	C	72981518	1	2	221	0	1	0	0	0	0	0	0	0	16702	1044	36	4		4	TRPA1	8	72981518	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2000162	72981518	73382504	295	168777											
KCNB2	9312	broad.mit.edu	37	chr8	73848769	73848769	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttaccctaaaacattactAgggaaaattgtgggaggtct	9	6	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73848769	T	T	73848769	2	4	221	1	0	0	0	0	0	0	0	1	8083	407	15	5		5	KCNB2	8	73848769	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	867251	73848769	72515253	296	168778											
KCNB2	9312	broad.mit.edu	37	chr8	73850219	73850219	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtgagtgaagtcaaaaagGacagtagtcaagaagggtgc	14	5	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73850219	T	T	73850219	3	4	221	1	0	0	0	0	1	0	0	0	8083	1174	41	3	2635	3	KCNB2	8	73850219	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1450	73850219	72513803	297	168779											
ZNF704	619279	broad.mit.edu	37	chr8	81571928	81571928	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcacagggggtgtggcctgTcaaataaaaaacagagaaag	13	6	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81571928	A	A	81571928	1	1	221	0	1	0	0	0	0	0	0	0	18234	1682	58	5		5	ZNF704	8	81571928	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	7721709	81571928	64792094	298	168780											
FABP9	646480	broad.mit.edu	37	chr8	82370629	82370629	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gacctttcttcacaccttttCgtagattctggtgctgacaa	7	11	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82370629	T	T	82370629	3	4	221	1	0	0	0	0	1	0	0	0	5409	893	31	4	13	4	FABP9	8	82370629	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	798701	82370629	63993393	299	168781											
FAM82B	51115	broad.mit.edu	37	chr8	87498631	87498631	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaatagagaaattgttctTccaatgtaaatcagagataa	6	4	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87498631	C	C	87498631	1	2	221	0	1	0	0	0	0	0	0	0	5685	1798	62	5		5	FAM82B	8	87498631	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	5128002	87498631	58865391	300	168782											
FAM82B	51115	broad.mit.edu	37	chr8	87498840	87498840	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctacatcacgtgatgccCgtgccaaacgccacagtaac	9	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87498840	A	A	87498840	3	1	221	1	0	0	0	0	1	0	0	0	5685	652	23	1	604	1	FAM82B	8	87498840	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	209	87498840	58865182	301	168783											
CNBD1	168975	broad.mit.edu	37	chr8	88249219	88249220	+	Missense_Mutation	DNP	TG	GA	GA													aacaaacgtgtataaaaatcTgattgaaggaagtgattcac							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	GA	88249220	GA	GA	88249219	3	3	221	1	0	0	0	0	1	0	0	0	3623	1580	55	5	672	5	CNBD1	8	88249219	Missense_Mutation	DNP	TG	TCGA-75-6211-01A-11D-1753-08	750379	88249219	58114803	302	168784											
MMP16	4325	broad.mit.edu	37	chr8	89058858	89058858	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcctaatgtgttactaagaTagcaaacttatgaaatgtag	8	5	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89058858	A	A	89058858	1	1	221	0	1	0	0	0	0	0	0	0	9748	1421	49	5		5	MMP16	8	89058858	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	809639	89058858	57305164	303	168785											
MMP16	4325	broad.mit.edu	37	chr8	89179851	89179851	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaatctcttggttattctGaaataataatagaaatattt	4	3	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89179851	T	T	89179851	1	4	221	0	1	0	0	0	0	0	0	0	9748	1305	45	3		3	MMP16	8	89179851	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	120993	89179851	57184171	304	168786											
CALB1	793	broad.mit.edu	37	chr8	91072931	91072931	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtatccattgccgtcctGggggaggagaaataaaatag	12	6	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91072931	T	T	91072931	1	4	221	0	1	0	0	0	0	0	0	0	2599	1363	47	2		2	CALB1	8	91072931	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1893080	91072931	55291091	305	168787											
TMEM67	91147	broad.mit.edu	37	chr8	94808196	94808196	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	acgttttgtcacttatgttgGatgtgcctttgctctgaagg	11	7	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94808196	C	C	94808196	3	2	221	1	0	0	0	0	1	0	0	0	16319	1174	41	4	2049	4	TMEM67	8	94808196	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3735265	94808196	51555826	306	168788											
FBXO43	286151	broad.mit.edu	37	chr8	101153696	101153696	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatcactaaagtcatgtgtGatagagtctttaaaattatt	6	5	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101153696	A	A	101153696	2	1	221	1	0	0	0	0	0	0	0	1	5809	1280	45	4		4	FBXO43	8	101153696	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	6345500	101153696	45210326	307	168789											
ODF1	4956	broad.mit.edu	37	chr8	103564336	103564336	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccttataagttggaataaGgaaaaatatgtgacaatcaa	8	4	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103564336	A	A	103564336	1	1	221	0	1	0	0	0	0	0	0	0	10921	1015	35	4		4	ODF1	8	103564336	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2410640	103564336	42799686	308	168790											
TM7SF4	81501	broad.mit.edu	37	chr8	105360984	105360984	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctcctggattatcacGtgtgttctgctgtgttgctc	11	11	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105360984	A	A	105360984	2	1	221	1	0	0	0	0	0	0	0	1	16099	1132	40	4		4	TM7SF4	8	105360984	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	1796648	105360984	41003038	309	168791											
PKHD1L1	93035	broad.mit.edu	37	chr8	110487490	110487490	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catatacatcgacattctatGgattcaaggtaaaaatattt	5	6	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110487490	A	A	110487490	3	1	221	1	0	0	0	0	1	0	0	0	12067	1349	47	4	8951	4	PKHD1L1	8	110487490	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	5126506	110487490	35876532	310	168792											
PKHD1L1	93035	broad.mit.edu	37	chr8	110520355	110520355	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagattcaacctgtaagtacCttccagagtggcagagctat	10	9	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110520355	T	T	110520355	3	4	221	1	0	0	0	0	1	0	0	0	12067	681	24	4	11535	4	PKHD1L1	8	110520355	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	32865	110520355	35843667	311	168793											
CSMD3	114788	broad.mit.edu	37	chr8	113246614	113246614	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagccatccattgcccaatTttcttccttcattttcttca	2	13	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113246614	A	A	113246614	3	1	221	1	0	0	0	0	1	0	0	0	3980	1841	64	5	419	5	CSMD3	8	113246614	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	2726259	113246614	33117408	312	168794											
CSMD3	114788	broad.mit.edu	37	chr8	113254143	113254143	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attctctgacatttcacataGatagttttctctaaaatgtt	4	7	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113254143	T	T	113254143	1	4	221	0	1	0	0	0	0	0	0	0	3980	957	33	3		3	CSMD3	8	113254143	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	7529	113254143	33109879	313	168795											
TRPS1	7227	broad.mit.edu	37	chr8	116632271	116632271	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acgtttctcagaggggggttCtttttccggaccatatctgc	11	10	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116632271	T	T	116632271	2	4	221	1	0	0	0	0	0	0	0	1	16718	912	32	4		4	TRPS1	8	116632271	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	3378128	116632271	29731751	314	168796											
EIF3H	8667	broad.mit.edu	37	chr8	117658622	117658622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacatactagcttttacggCatgcttttctgtttgtaaat	6	7	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117658622	A	A	117658622	1	1	221	0	1	0	0	0	0	0	0	0	5060	725	25	3		3	EIF3H	8	117658622	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1026351	117658622	28705400	315	168797											
COL14A1	7373	broad.mit.edu	37	chr8	121259871	121259871	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaccatcctcggggccccaGaacttgcgggtgtccgagga	14	13	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121259871	T	T	121259871	3	4	221	1	0	0	0	0	1	0	0	0	3703	933	33	3	2577	3	COL14A1	8	121259871	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3601249	121259871	25104151	316	168798											
ADCY8	114	broad.mit.edu	37	chr8	131862072	131862072	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggaaacacagaatgttGggtcattggcatcaattgtc	12	7	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131862072	T	T	131862072	1	4	221	0	1	0	0	0	0	0	0	0	300	1363	47	2		2	ADCY8	8	131862072	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	10602201	131862072	14501950	317	168799											
ADCY8	114	broad.mit.edu	37	chr8	131949309	131949309	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccaggtaacatgatggggatCacaaattacctgatggtttt	10	7	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131949309	T	T	131949309	1	4	221	0	1	0	0	0	0	0	0	0	300	841	29	4		4	ADCY8	8	131949309	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	87237	131949309	14414713	318	168800											
TG	7038	broad.mit.edu	37	chr8	134031948	134031948	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcagaatgtggtgagttCaaaagcacttgctatggttg	11	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134031948	T	T	134031948	1	4	221	0	1	0	0	0	0	0	0	0	15936	841	29	4		4	TG	8	134031948	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2082639	134031948	12332074	319	168801											
PTK2	5747	broad.mit.edu	37	chr8	141810476	141810476	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttttacagttacctaaaaGaggataacaggctgttaggg	10	5	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141810476	A	A	141810476	1	1	221	0	1	0	0	0	0	0	0	0	12868	957	33	4		4	PTK2	8	141810476	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	7778528	141810476	4553546	320	168802											
RFX3	5991	broad.mit.edu	37	chr9	3288091	3288091	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacccgaacaactaagaaaTacatagcttggacacatcaa	6	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3288091	C	C	3288091	1	2	221	0	1	0	0	0	0	0	0	0	13372	1421	49	5		5	RFX3	9	3288091	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08		3288091	137925340	321	168803											
JAK2	3717	broad.mit.edu	37	chr9	5030066	5030066	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctattctgtttctccatcAgagaaactgtttatacatgt	5	8	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5030066	G	G	5030066	1	3	221	0	1	0	0	0	0	0	0	0	8008	203	7	5		5	JAK2	9	5030066	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	1741975	5030066	136183365	322	168804											
C9orf93	203238	broad.mit.edu	37	chr9	15784564	15784564	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaactaaataatgcattaCttcgggaagagcaggcacaa	9	7	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15784564	T	T	15784564	3	4	221	1	0	0	0	0	1	0	0	0	2532	565	20	4	3217	4	C9orf93	9	15784564	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	10754498	15784564	125428867	323	168805											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18505002	18505002	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagaaccagaggtagccGgtttgaggcatgcttttgtg	15	6	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18505002	T	T	18505002	1	4	221	0	1	0	0	0	0	0	0	0	274	1131	39	1		1	ADAMTSL1	9	18505002	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2720438	18505002	122708429	324	168806											
CHMP5	51510	broad.mit.edu	37	chr9	33265066	33265066	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtttgggtttcttcgcGgctgctcaagatgaaccgac	12	9	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33265066	T	T	33265066	1	4	221	0	1	0	0	0	0	0	0	0	3390	1131	39	1		1	CHMP5	9	33265066	5'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	14760064	33265066	107948365	325	168807											
ANKRD20A4	728747	broad.mit.edu	37	chr9	69420299	69420299	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaaacaaaagtgaaaaaAtacaactttcagaaaatata	3	5	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69420299	C	C	69420299	3	2	221	1	0	0	0	0	1	0	0	0	650	101	4	5	1239	5	ANKRD20A4	9	69420299	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	36155233	69420299	71793132	326	168808											
ANXA1	301	broad.mit.edu	37	chr9	75780198	75780198	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgatgacaaataagagAaagtaaaaacagaacccttt	6	5	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75780198	G	G	75780198	1	3	221	0	1	0	0	0	0	0	0	0	714	261	9	5		5	ANXA1	9	75780198	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	6359899	75780198	65433233	327	168809											
OR13C4	138804	broad.mit.edu	37	chr9	107288787	107288787	+	Frame_Shift_Del	DEL	T	-	-													agcatgtagaaaatgccttgTgtcttcctgtggccgagttc							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107288787	-	-	107288787	7	5	221	1	0	1	0	1	0	0	0	0	11030	1696	59	0	254	0	OR13C4	9	107288787	Frame_Shift_Del	DEL	T	TCGA-75-6211-01A-11D-1753-08	31508589	107288787	33924644	328	168810											
ZNF483	158399	broad.mit.edu	37	chr9	114296717	114296717	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttgaaatgttgggctgcCtagatactaaaatacaaaga	8	6	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114296717	A	A	114296717	1	1	221	0	1	0	0	0	0	0	0	0	18063	696	24	2		2	ZNF483	9	114296717	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	7007930	114296717	26916714	329	168811											
PAPPA	5069	broad.mit.edu	37	chr9	119065156	119065156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	attcctggatcagtgggcatCcaatgcttcagtatctcatc	8	11	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119065156	A	A	119065156	3	1	221	1	0	0	0	0	1	0	0	0	11526	855	30	3	3112	3	PAPPA	9	119065156	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	4768439	119065156	22148275	330	168812											
TLR4	7099	broad.mit.edu	37	chr9	120476448	120476448	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatgcctttgttatctactCaagccaggatgaggactggg	12	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120476448	A	A	120476448	4	1	221	1	0	0	0	0	0	1	0	0	16076	838	29	3	2052	3	TLR4	9	120476448	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1411292	120476448	20736983	331	168813											
MRRF	92399	broad.mit.edu	37	chr9	125075707	125075707	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtgtctgtgtattcagcaTaaggaatcatttgttcatgt	9	5	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125075707	C	C	125075707	1	2	221	0	1	0	0	0	0	0	0	0	9944	1421	49	5		5	MRRF	9	125075707	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	4599259	125075707	16137724	332	168814											
OR1N1	138883	broad.mit.edu	37	chr9	125288841	125288841	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatagaacacacaaacaacGcagaggtgggaactgcaggt	11	10	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125288841	A	A	125288841	2	1	221	1	0	0	0	0	0	0	0	1	11063	1079	38	4		4	OR1N1	9	125288841	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	213134	125288841	15924590	333	168815											
ASS1	445	broad.mit.edu	37	chr9	133346041	133346041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgcagtttctctgggGcatgtccagcaatagggtcc	13	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133346041	T	T	133346041	1	4	221	0	1	0	0	0	0	0	0	0	1065	1218	42	3		3	ASS1	9	133346041	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	8057200	133346041	7867390	334	168816											
TSC1	7248	broad.mit.edu	37	chr9	135797349	135797349	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagatggacgagatagacttCcgccacgtggcctagaaaag	13	9	0	4	rs118203392		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135797349	A	A	135797349	4	1	221	1	0	0	0	0	0	1	0	0	16730	864	30	3	3042	3	TSC1	9	135797349	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2451308	135797349	5416082	335	168817											
RALGDS	5900	broad.mit.edu	37	chr9	135976835	135976835	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtagaccccgggagggcaggGatggtgcactgtgttcaggg	19	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135976835	A	A	135976835	1	1	221	0	1	0	0	0	0	0	0	0	13124	1189	41	4		4	RALGDS	9	135976835	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	179486	135976835	5236596	336	168818											
KCNT1	57582	broad.mit.edu	37	chr9	138670655	138670655	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaccatcgtcaacgtgCagaccatgttccggtgcgtc	10	14	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138670655	T	T	138670655	4	4	221	1	0	0	0	0	0	1	0	0	8161	711	25	4	2806	4	KCNT1	9	138670655	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2693820	138670655	2542776	337	168819											
CACNA1B	774	broad.mit.edu	37	chr9	140948480	140948480	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaactgaggcagggtgcaaGgtgggacacacagccccatg	14	10	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140948480	T	T	140948480	1	4	221	0	1	0	0	0	0	0	0	0	2565	1015	35	2		2	CACNA1B	9	140948480	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2277825	140948480	264951	338	168820											
AKR1C1	1645	broad.mit.edu	37	chr10	5019784	5019784	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctagagcagtcagaaaatGaacttcttaacatctacact	5	9	4	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5019784	A	A	5019784	1	1	221	0	1	0	0	0	0	0	0	0	469	1305	45	4		4	AKR1C1	10	5019784	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08		5019784	130514963	339	168821											
C10orf18	54906	broad.mit.edu	37	chr10	5781857	5781857	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgctctctaaagaaaattCtttgcgaggtacatctgacc	7	9	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5781857	A	A	5781857	3	1	221	1	0	0	0	0	1	0	0	0	1607	913	32	3	1762	3	C10orf18	10	5781857	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	762073	5781857	129752890	340	168822											
USP6NL	9712	broad.mit.edu	37	chr10	11505455	11505455	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctctgtagctgagacgtctGacggtttattccatttgggc	11	9	2	2	rs35440878		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11505455	T	T	11505455	4	4	221	1	0	0	0	0	0	1	0	0	17214	1294	45	3	1018	3	USP6NL	10	11505455	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	5723598	11505455	124029292	341	168823											
ITGA8	8516	broad.mit.edu	37	chr10	15572990	15572990	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctagcacaagctagacagtGattaaaacaattatttcaat	5	8	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15572990	A	A	15572990	1	1	221	0	1	0	0	0	0	0	0	0	7952	1305	45	4		4	ITGA8	10	15572990	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	4067535	15572990	119961757	342	168824											
CUBN	8029	broad.mit.edu	37	chr10	16955844	16955844	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcaggacggatgcgtgGccagcctcaggttgttaaac	14	9	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16955844	T	T	16955844	3	4	221	1	0	0	0	0	1	0	0	0	4084	1203	42	3	3452	3	CUBN	10	16955844	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1382854	16955844	118578903	343	168825											
GPR158	57512	broad.mit.edu	37	chr10	25701420	25701420	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtaaacccaggaaccctGgttatgatcctgtattacag	9	9	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25701420	T	T	25701420	1	4	221	0	1	0	0	0	0	0	0	0	6728	1363	47	2		2	GPR158	10	25701420	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	8745576	25701420	109833327	344	168826											
C10orf68	79741	broad.mit.edu	37	chr10	33135305	33135305	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatctgtttaattctatagaGactgataaagaactcttaaa	5	5	3	3	rs144109242		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33135305	T	T	33135305	3	4	221	1	0	0	0	0	1	0	0	0	1624	956	33	3	1393	3	C10orf68	10	33135305	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	7433885	33135305	102399442	345	168827											
C10orf68	79741	broad.mit.edu	37	chr10	33168482	33168482	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaaacacacaaacatcaaAcaattgtctcctttgagttc	3	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33168482	T	T	33168482	1	4	221	0	1	0	0	0	0	0	0	0	1624	58	2	5		5	C10orf68	10	33168482	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	33177	33168482	102366265	346	168828											
ITGB1	3688	broad.mit.edu	37	chr10	33209284	33209284	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgccttctgacaatttgccGttttccaaaatgacttctga	6	11	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33209284	A	A	33209284	2	1	221	1	0	0	0	0	0	0	0	1	7960	1136	40	4		4	ITGB1	10	33209284	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	40802	33209284	102325463	347	168829											
RET	5979	broad.mit.edu	37	chr10	43611989	43611989	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcccctgtcatcctcacActtttcccccctcttctccc	1	23	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43611989	T	T	43611989	1	4	221	0	1	0	0	0	0	0	0	0	13343	174	6	5		5	RET	10	43611989	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	10402705	43611989	91922758	348	168830											
GDF2	2658	broad.mit.edu	37	chr10	48414122	48414122	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	caacaaagaagggcaggtttCtggaacctggggggacactg	15	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48414122	G	G	48414122	3	3	221	1	0	0	0	0	1	0	0	0	6378	913	32	4	547	4	GDF2	10	48414122	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	4802133	48414122	87120625	349	168831											
GDF2	2658	broad.mit.edu	37	chr10	48416440	48416440	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaatcatgtactgcggcGgctccaccctggttttgtcc	11	13	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48416440	A	A	48416440	3	1	221	1	0	0	0	0	1	0	0	0	6378	1116	39	4	1043	4	GDF2	10	48416440	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2318	48416440	87118307	350	168832											
C10orf128	170371	broad.mit.edu	37	chr10	50374864	50374864	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatcacagagtggccctcGgtgcctcgctgggtggggca	16	12	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50374864	T	T	50374864	1	4	221	0	1	0	0	0	0	0	0	0	1603	1131	39	1		1	C10orf128	10	50374864	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1958424	50374864	85159883	351	168833											
PCDH15	65217	broad.mit.edu	37	chr10	55973840	55973840	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagatttcagtacataattGagaacaataagtaatatgtg	8	3	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55973840	T	T	55973840	1	4	221	0	1	0	0	0	0	0	0	0	11605	1305	45	3		3	PCDH15	10	55973840	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	5598976	55973840	79560907	352	168834											
JMJD1C	221037	broad.mit.edu	37	chr10	64968213	64968213	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttataaagatctgatactgaGcgttctacatccatatcttg	6	8	3	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64968213	C	C	64968213	2	2	221	1	0	0	0	0	0	0	0	1	8020	958	34	4		4	JMJD1C	10	64968213	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	8994373	64968213	70566534	353	168835											
TACR2	6865	broad.mit.edu	37	chr10	71174562	71174562	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtatattcacacaatcccGtgtacactcactcatgtgta	6	11	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71174562	A	A	71174562	1	1	221	0	1	0	0	0	0	0	0	0	15625	1160	40	4		4	TACR2	10	71174562	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	6206349	71174562	64360185	354	168836											
COL13A1	1305	broad.mit.edu	37	chr10	71655416	71655416	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcctcatctccctggggtCtccagttactaacagatcat	7	14	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71655416	T	T	71655416	1	4	221	0	1	0	0	0	0	0	0	0	3702	928	32	4		4	COL13A1	10	71655416	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	480854	71655416	63879331	355	168837											
COL13A1	1305	broad.mit.edu	37	chr10	71686992	71686992	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcagattagggttgacCcaacagggctggggcagatg	17	8	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71686992	A	A	71686992	1	1	221	0	1	0	0	0	0	0	0	0	3702	638	22	2		2	COL13A1	10	71686992	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	31576	71686992	63847755	356	168838											
ECD	11319	broad.mit.edu	37	chr10	74899485	74899485	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gatttcttcaccagggctcaTagcaagagaactatgaaaaa	8	8	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74899485	A	A	74899485	3	1	221	1	0	0	0	0	1	0	0	0	4928	1406	49	5	816	5	ECD	10	74899485	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	3212493	74899485	60635262	357	168839											
TTC18	118491	broad.mit.edu	37	chr10	75029452	75029452	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcttcagaaagagcatcctCagcctctgtgagctcctcca	9	14	3	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75029452	A	A	75029452	4	1	221	1	0	0	0	0	0	1	0	0	16811	835	29	3	220	3	TTC18	10	75029452	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	129967	75029452	60505295	358	168840											
GHITM	27069	broad.mit.edu	37	chr10	85904649	85904649	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaatttggcctcagtatgtCaaggatagaattcattccac	8	8	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85904649	G	G	85904649	2	3	221	1	0	0	0	0	0	0	0	1	6434	813	29	4		4	GHITM	10	85904649	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	10875197	85904649	49630098	359	168841											
GRID1	2894	broad.mit.edu	37	chr10	87407154	87407155	+	Splice_Site	DNP	CC	AA	AA													ttggacaggtcctggaaagtCctgaaatgcagaaaggcagc							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	87407155	AA	AA	87407154	5	1	221	1	0	0	0	0	0	0	1	0	6837	869	30	3	1047	3	GRID1	10	87407154	Splice_Site	DNP	CC	TCGA-75-6211-01A-11D-1753-08	1502505	87407154	48127593	360	168842											
KIF20B	9585	broad.mit.edu	37	chr10	91497559	91497559	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caaataaaattaatgcacacGaaaatagacgaactacgtac	5	8	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91497559	T	T	91497559	2	4	221	1	0	0	0	0	0	0	0	1	8357	1045	37	3		3	KIF20B	10	91497559	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	4090405	91497559	44037188	361	168843											
BTAF1	9044	broad.mit.edu	37	chr10	93788545	93788545	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttgccaatttttcttaAggatggcaaagcagaaaaag	8	5	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93788545	T	T	93788545	5	4	221	1	0	0	0	0	0	0	1	0	1545	86	3	5	5555	5	BTAF1	10	93788545	Splice_Site	SNP	A	TCGA-75-6211-01A-11D-1753-08	2290986	93788545	41746202	362	168844											
TLL2	7093	broad.mit.edu	37	chr10	98192670	98192671	+	Missense_Mutation	DNP	GG	AT	AT													ggagagaaggtcttggctgcGgcatgcaaggtcccagggct							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	98192671	AT	AT	98192670	3	1	221	1	0	0	0	0	1	0	0	0	16069	1103	39	4	2705	4	TLL2	10	98192670	Missense_Mutation	DNP	GG	TCGA-75-6211-01A-11D-1753-08	4404125	98192670	37342077	363	168845											
HPSE2	60495	broad.mit.edu	37	chr10	100995342	100995342	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggaagttctcattgactGtcctgactgggttcttggtg	13	7	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100995342	C	C	100995342	3	2	221	1	0	0	0	0	1	0	0	0	7412	1377	48	4	1646	4	HPSE2	10	100995342	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2802672	100995342	34539405	364	168846											
ACTR1A	10121	broad.mit.edu	37	chr10	104250467	104250467	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttatttaagaaaagaaagCggccgggcgcagtggctcac	12	8	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104250467	T	T	104250467	1	4	221	0	1	0	0	0	0	0	0	0	209	783	27	4		4	ACTR1A	10	104250467	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3255125	104250467	31284280	365	168847											
TRIM8	81603	broad.mit.edu	37	chr10	104404673	104404673	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctgccgccgcggcccccCgctgcccgcgcagaaggtct	13	19	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104404673	T	T	104404673	3	4	221	1	0	0	0	0	1	0	0	0	16673	652	23	4	301	4	TRIM8	10	104404673	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	154206	104404673	31130074	366	168848											
COL17A1	1308	broad.mit.edu	37	chr10	105817971	105817971	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggacaaacagattgacCtgagcttttaaactggagga	11	6	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105817971	A	A	105817971	1	1	221	0	1	0	0	0	0	0	0	0	3706	696	24	2		2	COL17A1	10	105817971	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1413298	105817971	29716776	367	168849											
TDRD1	56165	broad.mit.edu	37	chr10	115971637	115971637	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttcagaggatgatcagtGgtaccgtgcctctgttttgg	12	7	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115971637	A	A	115971637	4	1	221	1	0	0	0	0	0	1	0	0	15852	1357	47	4	1723	4	TDRD1	10	115971637	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	10153666	115971637	19563110	368	168850											
FAM160B1	57700	broad.mit.edu	37	chr10	116608455	116608455	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcctcctaccatgttgagGgcacaggatatgacacttac	8	11	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116608455	T	T	116608455	3	4	221	1	0	0	0	0	1	0	0	0	5516	1232	43	2	1812	2	FAM160B1	10	116608455	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	636818	116608455	18926292	369	168851											
KIAA1598	57698	broad.mit.edu	37	chr10	118671458	118671458	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagccttatattggtaataTgtatgactatatatattttt	6	3	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118671458	A	A	118671458	1	1	221	0	1	0	0	0	0	0	0	0	8316	1479	51	5		5	KIAA1598	10	118671458	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	2063003	118671458	16863289	370	168852											
MKI67	4288	broad.mit.edu	37	chr10	129906387	129906387	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttaccagcagccactaaTtcctcggtgtgaccaggagt	10	11	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129906387	C	C	129906387	2	2	221	1	0	0	0	0	0	0	0	1	9691	1490	52	5		5	MKI67	10	129906387	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	11234929	129906387	5628360	371	168853											
JAKMIP3	282973	broad.mit.edu	37	chr10	133967124	133967124	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcagcctcaactccctGgagagggctgtgctctcccc	11	17	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133967124	C	C	133967124	1	2	221	0	1	0	0	0	0	0	0	0	8012	1363	47	4		4	JAKMIP3	10	133967124	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	4060737	133967124	1567623	372	168854											
NLRP6	171389	broad.mit.edu	37	chr11	284494	284494	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtacagctgcctgaccccCagcgagggctccagtacctg	13	15	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	284494	T	T	284494	4	4	221	1	0	0	0	0	0	1	0	0	10576	595	21	4	2418	4	NLRP6	11	284494	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08		284494	134722022	373	168855											
PTDSS2	81490	broad.mit.edu	37	chr11	474009	474009	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccttttccgtgtgccccTgtggcatttctgttctgagc	9	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	474009	G	G	474009	1	3	221	0	1	0	0	0	0	0	0	0	12843	1595	55	5		5	PTDSS2	11	474009	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	189515	474009	134532507	374	168856											
TH	7054	broad.mit.edu	37	chr11	2189502	2189502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccctacaagacttccgGggggcagaggcagccggggc	15	15	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2189502	T	T	2189502	1	4	221	0	1	0	0	0	0	0	0	0	15961	1247	43	2		2	TH	11	2189502	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1715493	2189502	132817014	375	168857											
OR56A5	390084	broad.mit.edu	37	chr11	5989375	5989375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataggccatgatcatgaatGtgcaggactccatagtcaga	10	9	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5989375	T	T	5989375	3	4	221	1	0	0	0	0	1	0	0	0	11230	1377	48	3	593	3	OR56A5	11	5989375	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3799873	5989375	129017141	376	168858											
OR56A1	120796	broad.mit.edu	37	chr11	6048493	6048493	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagacactagctttggccaCaaattgattagtgatgatgg	11	6	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6048493	T	T	6048493	3	4	221	1	0	0	0	0	1	0	0	0	11227	478	17	4	518	4	OR56A1	11	6048493	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	59118	6048493	128958023	377	168859											
FAM160A2	84067	broad.mit.edu	37	chr11	6236055	6236055	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtgacaggccagctgggCcaccagccccgtcagcagga	16	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6236055	A	A	6236055	3	1	221	1	0	0	0	0	1	0	0	0	5515	739	26	3	628	3	FAM160A2	11	6236055	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	187562	6236055	128770461	378	168860											
CCKBR	887	broad.mit.edu	37	chr11	6291420	6291420	+	Frame_Shift_Del	DEL	C	-	-													acgagtgtggcagacgcgctCccacgcggctcgcgtgattg							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6291420	-	-	6291420	7	5	221	1	0	1	0	1	0	0	0	0	2909	855	30	0	516	0	CCKBR	11	6291420	Frame_Shift_Del	DEL	C	TCGA-75-6211-01A-11D-1753-08	55365	6291420	128715096	379	168861											
NLRP14	338323	broad.mit.edu	37	chr11	7060132	7060132	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgctaggggcaaatcggGggctaggcaggaaggaagtg	19	5	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7060132	T	T	7060132	1	4	221	0	1	0	0	0	0	0	0	0	10571	1247	43	2		2	NLRP14	11	7060132	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	768712	7060132	127946384	380	168862											
STK33	65975	broad.mit.edu	37	chr11	8496463	8496463	+	5'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatcagccatttgtttaactCtgcaacaaaagcaactttaa	4	9	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8496463	G	G	8496463	1	3	221	0	1	0	0	0	0	0	0	0	15418	928	32	4		4	STK33	11	8496463	5'UTR	SNP	C	TCGA-75-6211-01A-11D-1753-08	1436331	8496463	126510053	381	168863											
BTBD10	84280	broad.mit.edu	37	chr11	13410787	13410787	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctatagatcctaaagaaacAaatttaaaacaaagaagtga	6	5	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13410787	T	T	13410787	1	4	221	0	1	0	0	0	0	0	0	0	1547	145	5	5		5	BTBD10	11	13410787	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	4914324	13410787	121595729	382	168864											
NELL1	4745	broad.mit.edu	37	chr11	21555957	21555957	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagggaatcattgagtgccaCaaccattcccgctgcgttaa	10	11	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21555957	G	G	21555957	3	3	221	1	0	0	0	0	1	0	0	0	10428	477	17	4	1745	4	NELL1	11	21555957	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	8145170	21555957	113450559	383	168865											
API5	8539	broad.mit.edu	37	chr11	43364037	43364037	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttggggcacacgaggaaatCgtagtcggggaagactctac	15	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43364037	T	T	43364037	3	4	221	1	0	0	0	0	1	0	0	0	775	884	31	4	1606	4	API5	11	43364037	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	21808080	43364037	91642479	384	168866											
AGBL2	79841	broad.mit.edu	37	chr11	47726214	47726214	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttctcgaagacgtgggtttActtcatccaactcatcataa	7	10	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47726214	T	T	47726214	3	4	221	1	0	0	0	0	1	0	0	0	376	391	14	5	2293	5	AGBL2	11	47726214	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	4362177	47726214	87280302	385	168867											
OR4A47	403253	broad.mit.edu	37	chr11	48511031	48511031	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagaaccttagtcagaaAgggaggcaaaaagccctctc	9	9	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48511031	T	T	48511031	3	4	221	1	0	0	0	0	1	0	0	0	11136	69	3	5	689	5	OR4A47	11	48511031	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	784817	48511031	86495485	386	168868											
OR8J1	219477	broad.mit.edu	37	chr11	56128008	56128008	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaactacctcattctatGaatgtgccacccaactggga	7	11	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56128008	T	T	56128008	4	4	221	1	0	0	0	0	0	1	0	0	11335	1291	45	3	288	3	OR8J1	11	56128008	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	7616977	56128008	78878508	387	168869											
OR9I1	219954	broad.mit.edu	37	chr11	57886684	57886684	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggctaggatctgagggGtgatgactgaggtgtaacag	17	4	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57886684	T	T	57886684	3	4	221	1	0	0	0	0	1	0	0	0	11347	1261	44	3	715	3	OR9I1	11	57886684	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1758676	57886684	77119832	388	168870											
LPXN	9404	broad.mit.edu	37	chr11	58295382	58295382	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagcaaatggatctgtatcTcgtttctcctttaggatgcg	9	9	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58295382	A	A	58295382	1	1	221	0	1	0	0	0	0	0	0	0	9016	1566	54	5		5	LPXN	11	58295382	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	408698	58295382	76711134	389	168871											
PLAC1L	219990	broad.mit.edu	37	chr11	59814632	59814632	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatagcaaaaatatagttgGtgtatatctctccttaagtc	6	7	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59814632	T	T	59814632	1	4	221	0	1	0	0	0	0	0	0	0	12108	1276	44	3		3	PLAC1L	11	59814632	3'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	1519250	59814632	75191884	390	168872											
MS4A14	84689	broad.mit.edu	37	chr11	60184263	60184263	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccaggatcagcaaactgaaGaccagccggcccaagagaag	11	13	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60184263	C	C	60184263	3	2	221	1	0	0	0	0	1	0	0	0	9952	942	33	4	1840	4	MS4A14	11	60184263	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	369631	60184263	74822253	391	168873											
PITPNM1	9600	broad.mit.edu	37	chr11	67269493	67269493	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgaccgagtgataaagCcgggggtcctcttctgcttt	12	10	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67269493	A	A	67269493	2	1	221	1	0	0	0	0	0	0	0	1	12045	726	26	3		3	PITPNM1	11	67269493	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	7085230	67269493	67737023	392	168874											
MOGAT2	80168	broad.mit.edu	37	chr11	75438534	75438535	+	Missense_Mutation	DNP	CC	AA	AA													actacattgcgggcttccacCcccatggagtcctggcagtc							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	75438535	AA	AA	75438534	3	1	221	1	0	0	0	0	1	0	0	0	9789	623	22	2	335	2	MOGAT2	11	75438534	Missense_Mutation	DNP	CC	TCGA-75-6211-01A-11D-1753-08	8169041	75438534	59567982	393	168875											
C11orf82	220042	broad.mit.edu	37	chr11	82625779	82625779	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagaccacggtgtgaacAcatgaacagaagacgaaaat	10	8	0	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82625779	T	T	82625779	1	4	221	0	1	0	0	0	0	0	0	0	1677	174	6	5		5	C11orf82	11	82625779	5'UTR	SNP	A	TCGA-75-6211-01A-11D-1753-08	7187245	82625779	52380737	394	168876											
FAT3	120114	broad.mit.edu	37	chr11	92231524	92231524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttttctttgtcttttcCgatgctgtctggaatctatt	7	9	4	0	rs150302175	by1000genomes	TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92231524	A	A	92231524	1	1	221	0	1	0	0	0	0	0	0	0	5748	667	23	1		1	FAT3	11	92231524	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	9605745	92231524	42774992	395	168877											
FAT3	120114	broad.mit.edu	37	chr11	92495099	92495099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttctagatgaaaatgaCaacaagccccagttcccaga	8	11	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92495099	A	A	92495099	3	1	221	1	0	0	0	0	1	0	0	0	5748	477	17	3	3761	3	FAT3	11	92495099	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	263575	92495099	42511417	396	168878											
FAT3	120114	broad.mit.edu	37	chr11	92531183	92531183	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatgtctgacaattctcaCcccaagttcattcacaaaga	4	13	4	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531183	A	A	92531183	3	1	221	1	0	0	0	0	1	0	0	0	5748	506	18	3	5038	3	FAT3	11	92531183	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	36084	92531183	42475333	397	168879											
FAT3	120114	broad.mit.edu	37	chr11	92531207	92531207	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttcattcacaaagactaCcaagcagaagtaaatgaaaa	6	7	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92531207	A	A	92531207	4	1	221	1	0	0	0	0	0	1	0	0	5748	518	18	3	5062	3	FAT3	11	92531207	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	24	92531207	42475309	398	168880											
HEPHL1	341208	broad.mit.edu	37	chr11	93837765	93837765	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatgaaaagggaagaagAagtgacgttgattatgaatt	12	1	0	7			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93837765	G	G	93837765	2	3	221	1	0	0	0	0	0	0	0	1	7122	243	9	5		5	HEPHL1	11	93837765	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	1306558	93837765	41168751	399	168881											
HEPHL1	341208	broad.mit.edu	37	chr11	93839281	93839281	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accatccattatcatgctgaGagctttcttttcaaagtaag	6	9	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93839281	T	T	93839281	3	4	221	1	0	0	0	0	1	0	0	0	7122	933	33	3	3096	3	HEPHL1	11	93839281	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1516	93839281	41167235	400	168882											
CNTN5	53942	broad.mit.edu	37	chr11	99827757	99827757	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggtaagttgcttggccCgttaaaatggtcagccaact	11	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99827757	A	A	99827757	1	1	221	0	1	0	0	0	0	0	0	0	3676	667	23	1		1	CNTN5	11	99827757	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5988476	99827757	35178759	401	168883											
C11orf70	85016	broad.mit.edu	37	chr11	101937111	101937111	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatatcaaaaatgtcataTttgttaacttcttagaattt	3	4	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101937111	C	C	101937111	1	2	221	0	1	0	0	0	0	0	0	0	1671	1508	52	5		5	C11orf70	11	101937111	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	2109354	101937111	33069405	402	168884											
PDGFD	80310	broad.mit.edu	37	chr11	103797631	103797631	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaacaagaaatctaagaAtgacatacctcatgatactt	5	8	2	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103797631	T	T	103797631	1	4	221	0	1	0	0	0	0	0	0	0	11754	116	4	5		5	PDGFD	11	103797631	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	1860520	103797631	31208885	403	168885											
HTR3B	9177	broad.mit.edu	37	chr11	113802831	113802831	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcaaatgagttaacttacGaggctgtcactgaaaagctc	9	9	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113802831	T	T	113802831	1	4	221	0	1	0	0	0	0	0	0	0	7515	1073	37	3		3	HTR3B	11	113802831	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	10005200	113802831	21203685	404	168886											
APOA4	337	broad.mit.edu	37	chr11	116692349	116692349	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgctgacctgggtgcgcAgctggtccgcgtagggctcc	17	13	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116692349	T	T	116692349	3	4	221	1	0	0	0	0	1	0	0	0	785	188	7	5	769	5	APOA4	11	116692349	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	2889518	116692349	18314167	405	168887											
IFT46	56912	broad.mit.edu	37	chr11	118425705	118425705	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatgtactgactatacCtttaagaatgcatcaatatc	6	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118425705	G	G	118425705	3	3	221	1	0	0	0	0	1	0	0	0	7630	695	24	4	588	4	IFT46	11	118425705	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1733356	118425705	16580811	406	168888											
PVRL1	5818	broad.mit.edu	37	chr11	119508809	119508809	+	Nonstop_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggctgggtggtcctgggcTaggggcactctcctcgaggt	17	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119508809	C	C	119508809	4	2	221	1	0	0	0	0	0	0	0	0	12947	1536	53	5	4	5	PVRL1	11	119508809	Nonstop_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1083104	119508809	15497707	407	168889											
GRIK4	2900	broad.mit.edu	37	chr11	120807084	120807084	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcaaaggaggcctcttgGgtgcattaggatcttttaac	12	7	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120807084	T	T	120807084	1	4	221	0	1	0	0	0	0	0	0	0	6842	1247	43	2		2	GRIK4	11	120807084	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1298275	120807084	14199432	408	168890											
GRAMD1B	57476	broad.mit.edu	37	chr11	123475936	123475936	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagcaggaaatctcatAgatatggatggatagaaagg	12	3	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123475936	G	G	123475936	1	3	221	0	1	0	0	0	0	0	0	0	6814	435	15	5		5	GRAMD1B	11	123475936	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	2668852	123475936	11530580	409	168891											
OR10S1	219873	broad.mit.edu	37	chr11	123847594	123847594	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaggtagatacagacagGtggcacgtagtacaggagca	14	8	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123847594	A	A	123847594	3	1	221	1	0	0	0	0	1	0	0	0	11012	1261	44	4	194	4	OR10S1	11	123847594	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	371658	123847594	11158922	410	168892											
ROBO4	54538	broad.mit.edu	37	chr11	124756396	124756396	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccctgggctctagacCgaaaccaaagctatccacag	8	15	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124756396	T	T	124756396	3	4	221	1	0	0	0	0	1	0	0	0	13627	652	23	4	277	4	ROBO4	11	124756396	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	908802	124756396	10250120	411	168893											
PATE1	160065	broad.mit.edu	37	chr11	125618577	125618577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaggtggagtgtctatttGgtgaacttcaggtgctgcag	14	5	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125618577	T	T	125618577	3	4	221	1	0	0	0	0	1	0	0	0	11567	1339	47	2	348	2	PATE1	11	125618577	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	862181	125618577	9387939	412	168894											
ZBTB44	29068	broad.mit.edu	37	chr11	130165776	130165776	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagctaaagactcaccaCgtgcatacctatgggttgat	10	9	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130165776	A	A	130165776	1	1	221	0	1	0	0	0	0	0	0	0	17671	551	19	3		3	ZBTB44	11	130165776	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	4547199	130165776	4840740	413	168895											
OPCML	4978	broad.mit.edu	37	chr11	132290114	132290114	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgatgaagaagtgggctaaGagggtccctgatagccagag	15	6	0	6			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132290114	T	T	132290114	2	4	221	1	0	0	0	0	0	0	0	1	10968	929	33	3		3	OPCML	11	132290114	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	2124338	132290114	2716402	414	168896											
CACNA1C	775	broad.mit.edu	37	chr12	2622162	2622162	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgaaacagtgagcagccgTcttcttctgtgtttgggctg	12	11	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2622162	A	A	2622162	1	1	221	0	1	0	0	0	0	0	0	0	2566	1682	58	5		5	CACNA1C	12	2622162	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08		2622162	131229733	415	168897											
NRIP2	83714	broad.mit.edu	37	chr12	2936882	2936882	+	Intron	DEL	C	-	-													aacagaagaggctgagggttCccagtggtcactgctgccct							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	2936882	-	-	2936882	6	5	221	0	1	1	0	1	0	0	0	0	10748	870	30	0		0	NRIP2	12	2936882	Intron	DEL	C	TCGA-75-6211-01A-11D-1753-08	314720	2936882	130915013	416	168898											
TULP3	7289	broad.mit.edu	37	chr12	3040343	3040343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggataatccgggataaaagGggaatggatcggggtctctt	15	6	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3040343	T	T	3040343	3	4	221	1	0	0	0	0	1	0	0	0	16901	1223	43	2	655	2	TULP3	12	3040343	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	103461	3040343	130811552	417	168899											
ANO2	57101	broad.mit.edu	37	chr12	5672645	5672645	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaagaaatccactaataaGctcttctctttcttgatctg	6	9	4	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5672645	T	T	5672645	3	4	221	1	0	0	0	0	1	0	0	0	697	962	34	3	183	3	ANO2	12	5672645	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2632302	5672645	128179250	418	168900											
VWF	7450	broad.mit.edu	37	chr12	6153411	6153411	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcactcatccctgcctaCaagaaaactgaagggcaggc	8	15	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6153411	A	A	6153411	1	1	221	0	1	0	0	0	0	0	0	0	17373	493	17	3		3	VWF	12	6153411	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	480766	6153411	127698484	419	168901											
VWF	7450	broad.mit.edu	37	chr12	6182795	6182795	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcattaccagggcagctGcagccatccacgcatcgctc	9	15	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6182795	T	T	6182795	4	4	221	1	0	0	0	0	0	1	0	0	17373	1311	46	3	7634	3	VWF	12	6182795	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	29384	6182795	127669100	420	168902											
C1S	716	broad.mit.edu	37	chr12	7173950	7173950	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggaggtaaagtaccacCttggcttctccccagtccct	9	13	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7173950	T	T	7173950	1	4	221	0	1	0	0	0	0	0	0	0	1994	696	24	4		4	C1S	12	7173950	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	991155	7173950	126677945	421	168903											
A2M	2	broad.mit.edu	37	chr12	9243991	9243991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactcggtgatggtgtcagGgactgttactcctacctcag	11	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9243991	T	T	9243991	3	4	221	1	0	0	0	0	1	0	0	0	4	1232	43	2	2221	2	A2M	12	9243991	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2070041	9243991	124607904	422	168904											
PZP	5858	broad.mit.edu	37	chr12	9317929	9317929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactcggtgatggtgtcagGgactgttactcctacctcag	11	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9317929	T	T	9317929	3	4	221	1	0	0	0	0	1	0	0	0	12977	1232	43	2	2227	2	PZP	12	9317929	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	73938	9317929	124533966	423	168905											
PZP	5858	broad.mit.edu	37	chr12	9360755	9360755	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatatttggaaggtattgTaatgagtggaaaggtggcat	13	2	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9360755	C	C	9360755	1	2	221	0	1	0	0	0	0	0	0	0	12977	1653	57	5		5	PZP	12	9360755	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	42826	9360755	124491140	424	168906											
CLEC1B	51266	broad.mit.edu	37	chr12	10150960	10150960	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagccatcacacgccaccaGgaggaggatgcagagccaac	11	13	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10150960	A	A	10150960	2	1	221	1	0	0	0	0	0	0	0	1	3538	987	35	4		4	CLEC1B	12	10150960	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	790205	10150960	123700935	425	168907											
KLRC3	3823	broad.mit.edu	37	chr12	10588364	10588364	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcattcaactgcacatcctaGaacaataatattgaagatat	5	8	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10588364	C	C	10588364	1	2	221	0	1	0	0	0	0	0	0	0	8488	957	33	4		4	KLRC3	12	10588364	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	437404	10588364	123263531	426	168908											
KIAA1467	57613	broad.mit.edu	37	chr12	13215867	13215867	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagacttggatgaagaCggtgttcgagaccttgtggt	14	8	0	4	rs146598933	byFrequency	TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13215867	T	T	13215867	2	4	221	1	0	0	0	0	0	0	0	1	8305	535	19	4		4	KIAA1467	12	13215867	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	2627503	13215867	120636028	427	168909											
RERGL	79785	broad.mit.edu	37	chr12	18234173	18234173	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattattgatcaatttggcCattgatttagatccactggg	8	7	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18234173	A	A	18234173	3	1	221	1	0	0	0	0	1	0	0	0	13341	594	21	2	51	2	RERGL	12	18234173	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	5018306	18234173	115617722	428	168910											
SLCO1B3	28234	broad.mit.edu	37	chr12	21011412	21011412	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttgtaagttactttggatCtaaactacacagaccgaagt	7	7	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21011412	G	G	21011412	3	3	221	1	0	0	0	0	1	0	0	0	14838	913	32	4	276	4	SLCO1B3	12	21011412	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2777239	21011412	112840483	429	168911											
KIF21A	55605	broad.mit.edu	37	chr12	39751210	39751210	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatgtcattgatgctttcCacaccctcttcgtcaattat	4	12	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39751210	T	T	39751210	2	4	221	1	0	0	0	0	0	0	0	1	8358	581	21	4		4	KIF21A	12	39751210	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	18739798	39751210	94100685	430	168912											
PPHLN1	51535	broad.mit.edu	37	chr12	42681574	42681574	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caatggcttggttggaagacTgattggaaaagaaggcagaa	14	4	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42681574	A	A	42681574	1	1	221	0	1	0	0	0	0	0	0	0	12411	1595	55	5		5	PPHLN1	12	42681574	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	2930364	42681574	91170321	431	168913											
PLEKHA9	51054	broad.mit.edu	37	chr12	45567458	45567458	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cactgtagggccaagtttgtCtaatactggaaccacagcac	9	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45567458	A	A	45567458	3	1	221	1	0	0	0	0	1	0	0	0	12158	913	32	3	488	3	PLEKHA9	12	45567458	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2885884	45567458	88284437	432	168914											
RPAP3	79657	broad.mit.edu	37	chr12	48091539	48091539	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacaggggtcataattaTatgattaggaaaaaaaagaa	9	2	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48091539	C	C	48091539	1	2	221	0	1	0	0	0	0	0	0	0	13654	1421	49	5		5	RPAP3	12	48091539	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	2524081	48091539	85760356	433	168915											
ADCY6	112	broad.mit.edu	37	chr12	49165906	49165906	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggcaaaggggtaaaggGggcaggtagaggatggggca	20	4	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49165906	A	A	49165906	1	1	221	0	1	0	0	0	0	0	0	0	298	1247	43	4		4	ADCY6	12	49165906	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1074367	49165906	84685989	434	168916											
ADCY6	112	broad.mit.edu	37	chr12	49170959	49170960	+	Missense_Mutation	DNP	CC	AA	AA													cggcccgggcctccggcagcCctgacacacagtagtaacag							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	49170960	AA	AA	49170959	3	1	221	1	0	0	0	0	1	0	0	0	298	623	22	2	2270	2	ADCY6	12	49170959	Missense_Mutation	DNP	CC	TCGA-75-6211-01A-11D-1753-08	5053	49170959	84680936	435	168917											
CELA1	1990	broad.mit.edu	37	chr12	51740263	51740263	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgcaggcagagcgtccCacctgccctgggacagggtg	15	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51740263	A	A	51740263	1	1	221	0	1	0	0	0	0	0	0	0	3240	609	21	2		2	CELA1	12	51740263	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2569304	51740263	82111632	436	168918											
KRT81	3887	broad.mit.edu	37	chr12	52685241	52685241	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccaccaaatcctgatccGcaggtcatgatcctcctgga	8	16	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52685241	T	T	52685241	4	4	221	1	0	0	0	0	0	1	0	0	8566	1079	38	3	1544	3	KRT81	12	52685241	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	944978	52685241	81166654	437	168919											
KRT6C	286887	broad.mit.edu	37	chr12	52864796	52864796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactctaatagtgcagagtGcatgtcctgtgagaggaccc	11	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52864796	T	T	52864796	1	4	221	0	1	0	0	0	0	0	0	0	8553	1334	46	3		3	KRT6C	12	52864796	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	179555	52864796	80987099	438	168920											
AMHR2	269	broad.mit.edu	37	chr12	53818455	53818455	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgctttcttccttgcccCccctttctctcctcttcccc	3	20	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53818455	T	T	53818455	1	4	221	0	1	0	0	0	0	0	0	0	573	638	22	4		4	AMHR2	12	53818455	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	953659	53818455	80033440	439	168921											
GLS2	27165	broad.mit.edu	37	chr12	56865309	56865309	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gttctctttggacagggcctCagctgctgcctcagcctgag	12	13	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56865309	T	T	56865309	3	4	221	1	0	0	0	0	1	0	0	0	6528	835	29	4	41	4	GLS2	12	56865309	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3046854	56865309	76986586	440	168922											
SHMT2	6472	broad.mit.edu	37	chr12	57627914	57627914	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagtgagcaagaaggagcCccgggccagccagttcccac	14	13	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57627914	T	T	57627914	1	4	221	0	1	0	0	0	0	0	0	0	14399	638	22	4		4	SHMT2	12	57627914	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	762605	57627914	76223981	441	168923											
CAND1	55832	broad.mit.edu	37	chr12	67691560	67691560	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagataattcctttggtgGtaaaattttgcaatgtagat	9	3	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67691560	T	T	67691560	3	4	221	1	0	0	0	0	1	0	0	0	2641	1261	44	3	803	3	CAND1	12	67691560	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	10063646	67691560	66160335	442	168924											
NUP107	57122	broad.mit.edu	37	chr12	69084442	69084442	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgaagcttactaaggcaGccagatatttcctgcattct	8	11	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69084442	T	T	69084442	3	4	221	1	0	0	0	0	1	0	0	0	10848	962	34	3	233	3	NUP107	12	69084442	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1392882	69084442	64767453	443	168925											
OSBPL8	114882	broad.mit.edu	37	chr12	76788492	76788492	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgagtaatggatccaacCgcttcaccttttggaccctt	9	11	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76788492	T	T	76788492	2	4	221	1	0	0	0	0	0	0	0	1	11377	639	23	4		4	OSBPL8	12	76788492	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	7704050	76788492	57063403	444	168926											
NAV3	89795	broad.mit.edu	37	chr12	78444946	78444946	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtaagtaaccctgttctcCgtcagcattgtgtgaagagg	13	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78444946	G	G	78444946	1	3	221	0	1	0	0	0	0	0	0	0	10279	667	23	4		4	NAV3	12	78444946	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1656454	78444946	55406949	445	168927											
C12orf50	160419	broad.mit.edu	37	chr12	88391734	88391734	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttatatattacatcataaaCctttacagttaaacacatat	1	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88391734	A	A	88391734	1	1	221	0	1	0	0	0	0	0	0	0	1708	522	18	3		3	C12orf50	12	88391734	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	9946788	88391734	45460161	446	168928											
NEDD1	121441	broad.mit.edu	37	chr12	97328824	97328824	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcggataatggaatagTaactctctgggatgtaaata	10	4	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97328824	C	C	97328824	3	2	221	1	0	0	0	0	1	0	0	0	10404	1638	57	5	603	5	NEDD1	12	97328824	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	8937090	97328824	36523071	447	168929											
SLC17A8	246213	broad.mit.edu	37	chr12	100796515	100796515	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaggtctttggatttgcaAtaagtaaggtaaacacacag	10	5	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100796515	G	G	100796515	3	3	221	1	0	0	0	0	1	0	0	0	14536	101	4	5	1075	5	SLC17A8	12	100796515	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	3467691	100796515	33055380	448	168930											
HCFC2	29915	broad.mit.edu	37	chr12	104492250	104492250	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccaaaagggaagcaaagcAtctcaaaggtagctattgat	10	7	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104492250	T	T	104492250	3	4	221	1	0	0	0	0	1	0	0	0	7059	217	8	5	1920	5	HCFC2	12	104492250	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	3695735	104492250	29359645	449	168931											
C12orf23	90488	broad.mit.edu	37	chr12	107360877	107360877	+	Intron	DEL	T	-	-													aaatgaaatgtgtttgtatgTtttttttttaggagatcatg							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107360877	-	-	107360877	6	5	221	0	1	1	0	1	0	0	0	0	1690	1740	60	0		0	C12orf23	12	107360877	Intron	DEL	T	TCGA-75-6211-01A-11D-1753-08	2868627	107360877	26491018	450	168932											
CCDC63	160762	broad.mit.edu	37	chr12	111319117	111319117	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtacaccctccaggagCaagcttgtgctctctcactc	9	14	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111319117	A	A	111319117	1	1	221	0	1	0	0	0	0	0	0	0	2862	725	25	3		3	CCDC63	12	111319117	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3958240	111319117	22532778	451	168933											
CUX2	23316	broad.mit.edu	37	chr12	111785687	111785687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaccctccgggtaatgatgGactcccaaaagtggctcccg	11	14	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111785687	T	T	111785687	3	4	221	1	0	0	0	0	1	0	0	0	4098	1174	41	3	4105	3	CUX2	12	111785687	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	466570	111785687	22066208	452	168934											
ACAD10	80724	broad.mit.edu	37	chr12	112186168	112186168	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtgtttatgggaaaaacaGacccacatgcaccaagacac	9	10	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112186168	T	T	112186168	3	4	221	1	0	0	0	0	1	0	0	0	108	942	33	3	2692	3	ACAD10	12	112186168	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	400481	112186168	21665727	453	168935											
OAS2	4939	broad.mit.edu	37	chr12	113416336	113416336	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagacttcagtttcagtttcCtggctctgggcagcagcaag	11	10	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113416336	A	A	113416336	1	1	221	1	0	0	0	0	0	0	0	0	10895	696	24	2		2	OAS2	12	113416336	Translation_Start_Site	SNP	C	TCGA-75-6211-01A-11D-1753-08	1230168	113416336	20435559	454	168936											
OAS2	4939	broad.mit.edu	37	chr12	113436106	113436106	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagttgacccaaccaataAtgtgagtggagataaaatat	8	7	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113436106	T	T	113436106	3	4	221	1	0	0	0	0	1	0	0	0	10895	101	4	5	988	5	OAS2	12	113436106	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	19770	113436106	20415789	455	168937											
RASAL1	8437	broad.mit.edu	37	chr12	113552717	113552717	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtagggcatgcccacgaGctgggggcagggggcaccac	18	12	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113552717	A	A	113552717	3	1	221	1	0	0	0	0	1	0	0	0	13171	985	34	4	1385	4	RASAL1	12	113552717	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	116611	113552717	20299178	456	168938											
FBXW8	26259	broad.mit.edu	37	chr12	117426644	117426644	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttgcttttggtgtacaGggtctgggatgggtgtacga	16	5	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117426644	T	T	117426644	3	4	221	1	0	0	0	0	1	0	0	0	5827	991	35	2	1235	2	FBXW8	12	117426644	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3873927	117426644	16425251	457	168939											
TESC	54997	broad.mit.edu	37	chr12	117486714	117486714	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagccctccaagccccCaagccaatgcacacccagcc	5	23	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117486714	A	A	117486714	1	1	221	0	1	0	0	0	0	0	0	0	15888	609	21	2		2	TESC	12	117486714	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	60070	117486714	16365181	458	168940											
BRI3BP	140707	broad.mit.edu	37	chr12	125509731	125509731	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgttttccatgtcctgcGtgtacatcctgcacaagtac	7	13	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125509731	A	A	125509731	3	1	221	1	0	0	0	0	1	0	0	0	1522	1145	40	4	521	4	BRI3BP	12	125509731	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	8023017	125509731	8342164	459	168941											
TMEM132B	114795	broad.mit.edu	37	chr12	126068336	126068336	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagcttggtggacacccctCtcctgctcgcccctgtggta	12	15	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126068336	A	A	126068336	1	1	221	0	1	0	0	0	0	0	0	0	16169	928	32	3		3	TMEM132B	12	126068336	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	558605	126068336	7783559	460	168942											
CHFR	55743	broad.mit.edu	37	chr12	133420622	133420622	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggctccttacctggcaactCggaagcaggaatgttctgcc	12	12	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133420622	G	G	133420622	3	3	221	1	0	0	0	0	1	0	0	0	3368	893	31	4	136	4	CHFR	12	133420622	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7352286	133420622	431273	461	168943											
FRY	10129	broad.mit.edu	37	chr13	32836651	32836651	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgatttgtacttcccttAaaacccttaaaaaaaaacac	3	9	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32836651	G	G	32836651	1	3	221	0	1	0	0	0	0	0	0	0	6123	377	13	5		5	FRY	13	32836651	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08		32836651	82333227	462	168944											
BRCA2	675	broad.mit.edu	37	chr13	32937423	32937423	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtgtttctgacataatttCattgagcgcaaatatatctg	7	7	3	2	rs80359048		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32937423	A	A	32937423	4	1	221	1	0	0	0	0	0	1	0	0	1508	838	29	3	8150	3	BRCA2	13	32937423	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	100772	32937423	82232455	463	168945											
STARD13	90627	broad.mit.edu	37	chr13	33685899	33685899	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctactagggaggcggaggttCgagccttttgctcacctcaa	12	11	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33685899	G	G	33685899	1	3	221	0	1	0	0	0	0	0	0	0	15374	899	31	4		4	STARD13	13	33685899	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	748476	33685899	81483979	464	168946											
NBEA	26960	broad.mit.edu	37	chr13	35770462	35770462	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtactgaacttattattcAcagggctttatacataaaag	7	6	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35770462	G	G	35770462	1	3	221	0	1	0	0	0	0	0	0	0	10281	174	6	5		5	NBEA	13	35770462	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	2084563	35770462	79399416	465	168947											
TRPC4	7223	broad.mit.edu	37	chr13	38320279	38320279	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaattcattttccaccttgCtcagttcctgaagttcccaa	5	12	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38320279	A	A	38320279	3	1	221	1	0	0	0	0	1	0	0	0	16705	797	28	3	2292	3	TRPC4	13	38320279	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2549817	38320279	76849599	466	168948											
ATP7B	540	broad.mit.edu	37	chr13	52523778	52523778	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaacacaaccaccatataGcccaaggcattcaacttaca	3	13	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52523778	T	T	52523778	1	4	221	0	1	0	0	0	0	0	0	0	1195	986	34	3		3	ATP7B	13	52523778	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	14203499	52523778	62646100	467	168949											
THSD1	55901	broad.mit.edu	37	chr13	52972377	52972377	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaaaggtgcatttgagaaGaactattagtgacattgatg	10	3	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52972377	C	C	52972377	1	2	221	0	1	0	0	0	0	0	0	0	16000	957	33	4		4	THSD1	13	52972377	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	448599	52972377	62197501	468	168950											
CKAP2	26586	broad.mit.edu	37	chr13	53036058	53036058	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	caaagaaacctcggaagagaGaaagtaagtagatataattt	9	4	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53036058	C	C	53036058	3	2	221	1	0	0	0	0	1	0	0	0	3473	942	33	4	1114	4	CKAP2	13	53036058	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	63681	53036058	62133820	469	168951											
PCDH8	5100	broad.mit.edu	37	chr13	53418802	53418802	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggagcctccctggacgggGaggggagagcagagtgactg	20	8	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53418802	T	T	53418802	3	4	221	1	0	0	0	0	1	0	0	0	11611	1174	41	3	110	3	PCDH8	13	53418802	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	382744	53418802	61751076	470	168952											
RNF219	79596	broad.mit.edu	37	chr13	79190706	79190707	+	Frame_Shift_Ins	INS	-	A	A													tggagtactgagctgaaggcINSaactaagggacaaaggagta							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79190707	A	A	79190706	7	5	221	1	0	1	1	0	0	0	0	0	13593	710	25	0	994	0	RNF219	13	79190706	Frame_Shift_Ins	INS	-	TCGA-75-6211-01A-11D-1753-08	25771904	79190706	35979172	471	168953											
TMTC4	84899	broad.mit.edu	37	chr13	101320951	101320951	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccagaatggaggaagaacaGaagatggaagaatgtgatcc	13	6	0	6			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101320951	C	C	101320951	3	2	221	1	0	0	0	0	1	0	0	0	16386	942	33	4	2249	4	TMTC4	13	101320951	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	22130245	101320951	13848927	472	168954											
NALCN	259232	broad.mit.edu	37	chr13	101755488	101755488	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcattagaggtggactaCtgtgaactggaatcaaagga	13	6	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101755488	T	T	101755488	1	4	221	0	1	0	0	0	0	0	0	0	10242	580	20	4		4	NALCN	13	101755488	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	434537	101755488	13414390	473	168955											
NALCN	259232	broad.mit.edu	37	chr13	101757239	101757239	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaatgaagttggtgatGcttactaaagttgatggtac	12	3	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101757239	T	T	101757239	1	4	221	0	1	0	0	0	0	0	0	0	10242	1334	46	3		3	NALCN	13	101757239	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1751	101757239	13412639	474	168956											
OR4N2	390429	broad.mit.edu	37	chr14	20296384	20296384	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggcatcttcatctacacGcgccccttcagggctttccc	7	18	4	0	rs149732016	byFrequency	TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20296384	A	A	20296384	2	1	221	1	0	0	0	0	0	0	0	1	11171	1074	38	4		4	OR4N2	14	20296384	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08		20296384	87053156	475	168957											
CPNE6	9362	broad.mit.edu	37	chr14	24545800	24545801	+	Intron	DNP	CC	AA	AA													ttttcacctgccccgcctccCcgcagacacactccacacag							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	24545801	AA	AA	24545800	1	1	221	0	1	0	0	0	0	0	0	0	3848	638	22	2		2	CPNE6	14	24545800	Intron	DNP	CC	TCGA-75-6211-01A-11D-1753-08	4249416	24545800	82803740	476	168958											
NFATC4	4776	broad.mit.edu	37	chr14	24845163	24845163	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccgagggctccctgcctcAtttttactcttccctaggtg	9	15	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24845163	T	T	24845163	1	4	221	0	1	0	0	0	0	0	0	0	10460	232	8	5		5	NFATC4	14	24845163	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	299363	24845163	82504377	477	168959											
CTSG	1511	broad.mit.edu	37	chr14	25044512	25044512	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcacaaagtcttctcgCaccaggaaccctccacatct	6	16	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25044512	A	A	25044512	2	1	221	1	0	0	0	0	0	0	0	1	4069	697	25	3		3	CTSG	14	25044512	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	199349	25044512	82305028	478	168960											
EGLN3	112399	broad.mit.edu	37	chr14	34396240	34396240	+	Splice_Site	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accagacagtcatagcatatCtgtgaaagataagcagatat	8	7	2	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34396240	A	A	34396240	5	1	221	1	0	0	0	0	0	0	1	0	5010	927	32	3	113	3	EGLN3	14	34396240	Splice_Site	SNP	C	TCGA-75-6211-01A-11D-1753-08	9351728	34396240	72953300	479	168961											
PSMA6	5687	broad.mit.edu	37	chr14	35781997	35781997	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattgatggccaaagtcatGattagcagcagctatgtgac	10	7	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35781997	T	T	35781997	1	4	221	0	1	0	0	0	0	0	0	0	12777	1305	45	3		3	PSMA6	14	35781997	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1385757	35781997	71567543	480	168962											
MDGA2	161357	broad.mit.edu	37	chr14	47346708	47346708	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactcaaatgaggatttacAggagctacaagaaaagcaaa	8	6	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47346708	C	C	47346708	2	2	221	1	0	0	0	0	0	0	0	1	9500	175	7	5		5	MDGA2	14	47346708	Silent	SNP	A	TCGA-75-6211-01A-11D-1753-08	11564711	47346708	60002832	481	168963											
C14orf39	317761	broad.mit.edu	37	chr14	60951811	60951811	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcatcttggatactatgtTaaatgaaaaaaaaaattata	4	3	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60951811	C	C	60951811	1	2	221	0	1	0	0	0	0	0	0	0	1785	1769	61	5		5	C14orf39	14	60951811	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	13605103	60951811	46397729	482	168964											
SPTB	6710	broad.mit.edu	37	chr14	65271709	65271709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgagcatgcgcccatccCgcaggtccttgtagagatcg	12	12	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65271709	A	A	65271709	3	1	221	1	0	0	0	0	1	0	0	0	15236	652	23	1	6943	1	SPTB	14	65271709	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	4319898	65271709	42077831	483	168965											
PCNX	22990	broad.mit.edu	37	chr14	71556092	71556092	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttttctaattcattactGgtgtttactgatccttcttc	5	8	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71556092	T	T	71556092	1	4	221	0	1	0	0	0	0	0	0	0	11685	1363	47	2		2	PCNX	14	71556092	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	6284383	71556092	35793448	484	168966											
ABCD4	5826	broad.mit.edu	37	chr14	74757236	74757236	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagggggcgtgaggaagaTgggcagggtcagtattgctg	21	4	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74757236	C	C	74757236	1	2	221	0	1	0	0	0	0	0	0	0	63	1479	51	5		5	ABCD4	14	74757236	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	3201144	74757236	32592304	485	168967											
ANGEL1	23357	broad.mit.edu	37	chr14	77275724	77275724	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactcagctgcctgctggaCcacctgtcctctgaagcagc	9	16	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77275724	A	A	77275724	3	1	221	1	0	0	0	0	1	0	0	0	608	508	18	3	1721	3	ANGEL1	14	77275724	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2518488	77275724	30073816	486	168968											
TMED8	283578	broad.mit.edu	37	chr14	77808395	77808395	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgaaggtgagcggaaGgaccaggtgacccagtggct	16	10	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77808395	A	A	77808395	1	1	221	0	1	0	0	0	0	0	0	0	16134	1015	35	4		4	TMED8	14	77808395	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	532671	77808395	29541145	487	168969											
ISM2	145501	broad.mit.edu	37	chr14	77942014	77942014	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggtgcaggctcggccgttgTtgggagggagcacagcgtgg	20	9	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77942014	A	A	77942014	3	1	221	1	0	0	0	0	1	0	0	0	7931	1725	60	5	79	5	ISM2	14	77942014	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	133619	77942014	29407526	488	168970											
C14orf145	145508	broad.mit.edu	37	chr14	80997210	80997210	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcacagactccagatgGtccaaggccacttgggtact	11	12	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80997210	T	T	80997210	3	4	221	1	0	0	0	0	1	0	0	0	1762	1252	44	3	399	3	C14orf145	14	80997210	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3055196	80997210	26352330	489	168971											
ITPK1	3705	broad.mit.edu	37	chr14	93408241	93408241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaagaactcgctcacgcCctcgtagcctgggggtggga	15	11	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93408241	A	A	93408241	3	1	221	1	0	0	0	0	1	0	0	0	7986	623	22	2	386	2	ITPK1	14	93408241	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	12411031	93408241	13941299	490	168972											
WARS	7453	broad.mit.edu	37	chr14	100803403	100803403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggttccctgctcaccttcCtgatctgctcgagcttgtcg	11	14	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100803403	A	A	100803403	3	1	221	1	0	0	0	0	1	0	0	0	17376	681	24	2	173	2	WARS	14	100803403	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7395162	100803403	6546137	491	168973											
DYNC1H1	1778	broad.mit.edu	37	chr14	102449829	102449829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaagaaaatctgaagatGgtgtggcgtatcaaccctgc	13	7	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102449829	T	T	102449829	3	4	221	1	0	0	0	0	1	0	0	0	4881	1348	47	2	1370	2	DYNC1H1	14	102449829	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1646426	102449829	4899711	492	168974											
AHNAK2	113146	broad.mit.edu	37	chr14	105410286	105410286	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggagactcacatcggcCtccaccttgggtgcagacac	13	13	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105410286	A	A	105410286	3	1	221	1	0	0	0	0	1	0	0	0	415	680	24	2	5889	2	AHNAK2	14	105410286	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2960457	105410286	1939254	493	168975											
NIPA1	123606	broad.mit.edu	37	chr15	23048984	23048984	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgctccactcccggaagaGgatggctgaggccagcagga	15	11	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23048984	C	C	23048984	3	2	221	1	0	0	0	0	1	0	0	0	10517	1000	35	4	158	4	NIPA1	15	23048984	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08		23048984	79482408	494	168976											
SNRPN	6638	broad.mit.edu	37	chr15	25154911	25154911	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taccctctcatcatcgtcttCtaaatttcacttggtatctc	3	13	6	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25154911	T	T	25154911	1	4	221	0	1	0	0	0	0	0	0	0	14984	928	32	4		4	SNRPN	15	25154911	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2105927	25154911	77376481	495	168977											
GABRB3	2562	broad.mit.edu	37	chr15	26812850	26812850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccaatgttcctcttcaacCgaaagctcagtgacagtcga	7	12	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26812850	A	A	26812850	3	1	221	1	0	0	0	0	1	0	0	0	6228	652	23	1	720	1	GABRB3	15	26812850	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1657939	26812850	75718542	496	168978											
OCA2	4948	broad.mit.edu	37	chr15	28196981	28196981	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attgaggaaaaacatgaagaTaacaaatcccaacactgtca	6	8	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28196981	A	A	28196981	3	1	221	1	0	0	0	0	1	0	0	0	10910	1406	49	5	644	5	OCA2	15	28196981	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1384131	28196981	74334411	497	168979											
HERC2	8924	broad.mit.edu	37	chr15	28422209	28422209	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcgctgtgcgagctccCacaggcgatatcccggatac	13	14	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28422209	A	A	28422209	3	1	221	1	0	0	0	0	1	0	0	0	7125	594	21	2	5317	2	HERC2	15	28422209	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	225228	28422209	74109183	498	168980											
FAM189A1	23359	broad.mit.edu	37	chr15	29526451	29526451	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtcgtaactcttctcttctCtcttccgcagaaggagtttt	7	11	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29526451	T	T	29526451	1	4	221	0	1	0	0	0	0	0	0	0	5562	928	32	4		4	FAM189A1	15	29526451	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1104242	29526451	73004941	499	168981											
RYR3	6263	broad.mit.edu	37	chr15	33603291	33603291	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggacgagatccagtttctGaggactgtgagtctccgcgg	15	9	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33603291	T	T	33603291	2	4	221	1	0	0	0	0	0	0	0	1	13881	1277	45	3		3	RYR3	15	33603291	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	4076840	33603291	68928101	500	168982											
C15orf57	90416	broad.mit.edu	37	chr15	40857055	40857055	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gatcccaggcctcagtcgctCaggtctctagggctgtctgg	13	13	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40857055	A	A	40857055	1	1	221	0	1	0	0	0	0	0	0	0	1818	841	29	3		3	C15orf57	15	40857055	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	7253764	40857055	61674337	501	168983											
EXD1	161829	broad.mit.edu	37	chr15	41509065	41509065	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaacagattttgccacAcattaacgttaaggacagtg	7	9	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41509065	G	G	41509065	1	3	221	0	1	0	0	0	0	0	0	0	5339	174	6	5		5	EXD1	15	41509065	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	652010	41509065	61022327	502	168984											
UBR1	197131	broad.mit.edu	37	chr15	43314845	43314845	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattgacaaattaaaactcCttaagatctagactttcaat	5	7	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43314845	A	A	43314845	1	1	221	0	1	0	0	0	0	0	0	0	17027	696	24	2		2	UBR1	15	43314845	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1805780	43314845	59216547	503	168985											
COPS2	9318	broad.mit.edu	37	chr15	49426281	49426281	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccttttcaaattcaccttccCtcaagtgcattttaccacca	2	15	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49426281	G	G	49426281	3	3	221	1	0	0	0	0	1	0	0	0	3765	681	24	4	615	4	COPS2	15	49426281	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	6111436	49426281	53105111	504	168986											
CYP19A1	1588	broad.mit.edu	37	chr15	51507397	51507397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatttccaatatgcactgGttcacattctctcttgtcag	6	11	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51507397	T	T	51507397	3	4	221	1	0	0	0	0	1	0	0	0	4181	1252	44	3	632	3	CYP19A1	15	51507397	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2081116	51507397	51023995	505	168987											
DMXL2	23312	broad.mit.edu	37	chr15	51755682	51755682	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgactggaaatgcagaaGaatcccgggacctattaaaa	10	7	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51755682	A	A	51755682	3	1	221	1	0	0	0	0	1	0	0	0	4635	942	33	4	1337	4	DMXL2	15	51755682	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	248285	51755682	50775710	506	168988											
UNC13C	440279	broad.mit.edu	37	chr15	54342531	54342531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacattttctgaatcaggacCccacactactgaataccatt	4	12	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54342531	A	A	54342531	1	1	221	0	1	0	0	0	0	0	0	0	17112	638	22	2		2	UNC13C	15	54342531	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2586849	54342531	48188861	507	168989											
MAP2K1	5604	broad.mit.edu	37	chr15	66727441	66727441	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgaaagcgccttgaggccTttcttacccagaagcagaag	11	11	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66727441	C	C	66727441	3	2	221	1	0	0	0	0	1	0	0	0	9328	1609	56	5	163	5	MAP2K1	15	66727441	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	12384910	66727441	35803951	508	168990											
LCTL	197021	broad.mit.edu	37	chr15	66850109	66850109	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccggcataaatggggttGgcaaaccagcccagacagaa	11	11	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66850109	T	T	66850109	2	4	221	1	0	0	0	0	0	0	0	1	8766	1335	47	2		2	LCTL	15	66850109	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	122668	66850109	35681283	509	168991											
MAP2K5	5607	broad.mit.edu	37	chr15	67855587	67855587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcattaaacaaatgcaCaccttatcatttgcattatg	5	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67855587	A	A	67855587	1	1	221	0	1	0	0	0	0	0	0	0	9332	493	17	3		3	MAP2K5	15	67855587	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1005478	67855587	34675805	510	168992											
PTPN9	5780	broad.mit.edu	37	chr15	75815560	75815560	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagtaaagagggcaatGgaggctcctgttgggtcccg	16	9	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75815560	A	A	75815560	2	1	221	1	0	0	0	0	0	0	0	1	12902	1335	47	4		4	PTPN9	15	75815560	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	7959973	75815560	26715832	511	168993											
CSPG4	1464	broad.mit.edu	37	chr15	75981627	75981627	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggaggtgccaaggacCtggaaggtgaggccctcaca	15	11	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75981627	G	G	75981627	3	3	221	1	0	0	0	0	1	0	0	0	3994	680	24	4	5221	4	CSPG4	15	75981627	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	166067	75981627	26549765	512	168994											
SCAPER	49855	broad.mit.edu	37	chr15	77087629	77087629	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcacttgccatttttgCgtgaggccttctgcactgtc	10	11	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77087629	T	T	77087629	3	4	221	1	0	0	0	0	1	0	0	0	13990	768	27	4	3576	4	SCAPER	15	77087629	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1106002	77087629	25443763	513	168995											
ADAMTS7	11173	broad.mit.edu	37	chr15	79068701	79068701	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagacagacggaggtagagcCaccccacccccaagtctatc	10	15	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79068701	A	A	79068701	1	1	221	0	1	0	0	0	0	0	0	0	271	609	21	2		2	ADAMTS7	15	79068701	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1981072	79068701	23462691	514	168996											
NTRK3	4916	broad.mit.edu	37	chr15	88483959	88483959	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttctcgcttcagcacgatGtctctcctcttaatgtgctg	8	12	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88483959	A	A	88483959	2	1	221	1	0	0	0	0	0	0	0	1	10803	1368	48	4		4	NTRK3	15	88483959	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	9415258	88483959	14047433	515	168997											
ACAN	176	broad.mit.edu	37	chr15	89392759	89392759	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatgctacgctggccaccaCgggccagctctacgccgcct	10	18	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89392759	A	A	89392759	3	1	221	1	0	0	0	0	1	0	0	0	117	536	19	3	1857	3	ACAN	15	89392759	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	908800	89392759	13138633	516	168998											
MSLN	10232	broad.mit.edu	37	chr16	816697	816697	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcgaccgctttgtgaaGggaaggggccagctagacaa	14	9	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	816697	T	T	816697	3	4	221	1	0	0	0	0	1	0	0	0	9975	991	35	2	1330	2	MSLN	16	816697	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08		816697	89538056	517	168999											
TRAF7	84231	broad.mit.edu	37	chr16	2225041	2225041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggctggcatggacctcGggccctgccagggcggtgtc	17	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2225041	T	T	2225041	1	4	221	0	1	0	0	0	0	0	0	0	16570	1131	39	1		1	TRAF7	16	2225041	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1408344	2225041	88129712	518	169000											
NLRC3	197358	broad.mit.edu	37	chr16	3614682	3614682	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaggagggaggccagccTgtgccagggtccgcccagct	16	14	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3614682	G	G	3614682	2	3	221	1	0	0	0	0	0	0	0	1	10563	1579	55	5		5	NLRC3	16	3614682	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	1389641	3614682	86740071	519	169001											
IQCK	124152	broad.mit.edu	37	chr16	19729830	19729830	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtaggaaacctgggctggccGagaggggcgggacccgggcg	21	10	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19729830	C	C	19729830	1	2	221	0	1	0	0	0	0	0	0	0	7883	1073	37	4		4	IQCK	16	19729830	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	16115148	19729830	70624923	520	169002											
QPRT	23475	broad.mit.edu	37	chr16	29690615	29690615	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctggcttgtctcagcccCttgttgcctcctctggagtc	9	16	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29690615	A	A	29690615	1	1	221	0	1	0	0	0	0	0	0	0	12984	696	24	2		2	QPRT	16	29690615	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	9960785	29690615	60664138	521	169003											
ITGAL	3683	broad.mit.edu	37	chr16	30510692	30510692	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatctcacttacactctgcAgctggatggccaccggacca	8	15	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30510692	T	T	30510692	3	4	221	1	0	0	0	0	1	0	0	0	7956	188	7	5	2093	5	ITGAL	16	30510692	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	820077	30510692	59844061	522	169004											
ZNF688	146542	broad.mit.edu	37	chr16	30581633	30581633	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcccgtgccggggccacGctaatagctgggtcagggtt	16	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30581633	A	A	30581633	2	1	221	1	0	0	0	0	0	0	0	1	18220	1078	38	4		4	ZNF688	16	30581633	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	70941	30581633	59773120	523	169005											
ITGAM	3684	broad.mit.edu	37	chr16	31340632	31340632	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaatatcaggtgggcaGctgggacgtctgggtcctga	15	9	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31340632	T	T	31340632	1	4	221	0	1	0	0	0	0	0	0	0	7957	986	34	3		3	ITGAM	16	31340632	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	758999	31340632	59014121	524	169006											
COX6A2	1339	broad.mit.edu	37	chr16	31439056	31439056	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacagagccgcagactcgaAgcttcacacctttattgtgt	8	13	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31439056	T	T	31439056	1	4	221	0	1	0	0	0	0	0	0	0	3807	86	3	5		5	COX6A2	16	31439056	3'UTR	SNP	A	TCGA-75-6211-01A-11D-1753-08	98424	31439056	58915697	525	169007											
C16orf58	64755	broad.mit.edu	37	chr16	31504879	31504879	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtcaggatgcctaggcagTgggagaggttgagacacagg	19	6	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31504879	C	C	31504879	1	2	221	0	1	0	0	0	0	0	0	0	1836	1711	59	5		5	C16orf58	16	31504879	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	65823	31504879	58849874	526	169008											
ABCC12	94160	broad.mit.edu	37	chr16	48120767	48120767	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaggacagggagccagatTtccaaggacgagaggatgga	17	6	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48120767	A	A	48120767	1	1	221	0	1	0	0	0	0	0	0	0	52	1856	64	5		5	ABCC12	16	48120767	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	16615888	48120767	42233986	527	169009											
ZNF423	23090	broad.mit.edu	37	chr16	49660112	49660112	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggcaacgtggatttggatCtctctctcgttctcgaaggt	11	9	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49660112	G	G	49660112	3	3	221	1	0	0	0	0	1	0	0	0	18025	912	32	4	324	4	ZNF423	16	49660112	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1539345	49660112	40694641	528	169010											
ZNF423	23090	broad.mit.edu	37	chr16	49670744	49670744	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttggccgggttgcccagGtggctgtgtttgacgtgcac	16	11	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49670744	T	T	49670744	3	4	221	1	0	0	0	0	1	0	0	0	18025	1252	44	3	1555	3	ZNF423	16	49670744	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	10632	49670744	40684009	529	169011											
ZNF423	23090	broad.mit.edu	37	chr16	49856553	49856553	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctacttcccttgccccacCcctcagcccaaggcctcccc	5	24	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49856553	G	G	49856553	1	3	221	0	1	0	0	0	0	0	0	0	18025	638	22	4		4	ZNF423	16	49856553	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	185809	49856553	40498200	530	169012											
NKD1	85407	broad.mit.edu	37	chr16	50642220	50642220	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggagctcgtgggcgacGtgttgagagacacgctcagc	16	9	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50642220	T	T	50642220	3	4	221	1	0	0	0	0	1	0	0	0	10536	1145	40	3	222	3	NKD1	16	50642220	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	785667	50642220	39712533	531	169013											
CHD9	80205	broad.mit.edu	37	chr16	53341597	53341597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacgcttttctaggatcGtgtgatgatcaataggttgg	12	6	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53341597	T	T	53341597	3	4	221	1	0	0	0	0	1	0	0	0	3363	1145	40	3	6911	3	CHD9	16	53341597	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2699377	53341597	37013156	532	169014											
BBS2	583	broad.mit.edu	37	chr16	56534706	56534706	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgggcatatggaaaatttAtacatcttgccctcctctaa	6	10	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56534706	G	G	56534706	1	3	221	0	1	0	0	0	0	0	0	0	1343	464	16	5		5	BBS2	16	56534706	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	3193109	56534706	33820047	533	169015											
MT4	84560	broad.mit.edu	37	chr16	56599112	56599112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtctgggaaccttggaCcagcttcctacagggagcct	14	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56599112	A	A	56599112	1	1	221	0	1	0	0	0	0	0	0	0	10001	522	18	3		3	MT4	16	56599112	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	64406	56599112	33755641	534	169016											
CDH16	1014	broad.mit.edu	37	chr16	66945140	66945140	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccaggctgggcgccctgCagggactgggcggtgtgcac	17	14	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66945140	A	A	66945140	2	1	221	1	0	0	0	0	0	0	0	1	3131	697	25	3		3	CDH16	16	66945140	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	10346028	66945140	23409613	535	169017											
DPEP2	64174	broad.mit.edu	37	chr16	68023932	68023932	+	Intron	DEL	C	-	-													aatcagaactgttcagagagCccgggagagggagttacctg							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68023932	-	-	68023932	6	5	221	0	1	1	0	1	0	0	0	0	4754	754	26	0		0	DPEP2	16	68023932	Intron	DEL	C	TCGA-75-6211-01A-11D-1753-08	1078792	68023932	22330821	536	169018											
NFATC3	4775	broad.mit.edu	37	chr16	68224795	68224795	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcacatgacagtgtactGtcaggacagagaagtttgat	11	6	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68224795	T	T	68224795	2	4	221	1	0	0	0	0	0	0	0	1	10459	1364	48	3		3	NFATC3	16	68224795	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	200863	68224795	22129958	537	169019											
SF3B3	23450	broad.mit.edu	37	chr16	70605714	70605715	+	Nonstop_Mutation	DNP	TG	CT	CT													tccggacccgctacgccttcTgagccctcctttcccggtgg							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	70605715	CT	CT	70605714	4	2	221	1	0	0	0	0	0	0	0	0	14265	1593	55	5	3750	5	SF3B3	16	70605714	Nonstop_Mutation	DNP	TG	TCGA-75-6211-01A-11D-1753-08	2380919	70605714	19749039	538	169020											
HYDIN	54768	broad.mit.edu	37	chr16	71101239	71101239	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctccgatgccctccaCgtccaccacgagtgccagct	7	19	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71101239	A	A	71101239	3	1	221	1	0	0	0	0	1	0	0	0	7537	536	19	3	13633	3	HYDIN	16	71101239	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	495525	71101239	19253514	539	169021											
ZNF19	7567	broad.mit.edu	37	chr16	71509360	71509360	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgagcactgaaggcttTtccacaatctacacagtcaa	6	12	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71509360	C	C	71509360	3	2	221	1	0	0	0	0	1	0	0	0	17881	1850	64	5	290	5	ZNF19	16	71509360	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	408121	71509360	18845393	540	169022											
PMFBP1	83449	broad.mit.edu	37	chr16	72164249	72164249	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaatgacagctcctccaCccgttttctaaagcaaaata	4	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72164249	A	A	72164249	3	1	221	1	0	0	0	0	1	0	0	0	12229	507	18	3	1478	3	PMFBP1	16	72164249	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	654889	72164249	18190504	541	169023											
ADAMTS18	170692	broad.mit.edu	37	chr16	77356285	77356285	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtttggggagcagggagttCcatctttcactttgccggac	13	9	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77356285	A	A	77356285	3	1	221	1	0	0	0	0	1	0	0	0	263	855	30	3	1594	3	ADAMTS18	16	77356285	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	5192036	77356285	12998468	542	169024											
PKD1L2	114780	broad.mit.edu	37	chr16	81232459	81232459	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaggcctgcagccctgAcagcagctccaccaagtgga	12	15	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81232459	T	T	81232459	3	4	221	1	0	0	0	0	1	0	0	0	12060	275	10	5	6245	5	PKD1L2	16	81232459	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	3876174	81232459	9122294	543	169025											
CDH13	1012	broad.mit.edu	37	chr16	83378632	83378632	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatgtcacattggcttaccTttagcgtaatggcttggaaa	10	7	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83378632	A	A	83378632	1	1	221	0	1	0	0	0	0	0	0	0	3129	1624	56	5		5	CDH13	16	83378632	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	2146173	83378632	6976121	544	169026											
NECAB2	54550	broad.mit.edu	37	chr16	84031925	84031925	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtgaggaactgcttccagtGagtgagctgccgaggcgtgg	17	9	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84031925	A	A	84031925	1	1	221	0	1	0	0	0	0	0	0	0	10400	1305	45	4		4	NECAB2	16	84031925	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	653293	84031925	6322828	545	169027											
SLC38A8	146167	broad.mit.edu	37	chr16	84050277	84050277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgaggggtcggccagggCgctgggcccccatcccccca	14	19	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84050277	A	A	84050277	3	1	221	1	0	0	0	0	1	0	0	0	14724	768	27	3	310	3	SLC38A8	16	84050277	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	18352	84050277	6304476	546	169028											
SLC38A8	146167	broad.mit.edu	37	chr16	84050766	84050766	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccaggaagagcacgatgGggtagacagttacgatggag	15	8	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84050766	C	C	84050766	3	2	221	1	0	0	0	0	1	0	0	0	14724	1232	43	4	391	4	SLC38A8	16	84050766	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	489	84050766	6303987	547	169029											
MTHFSD	64779	broad.mit.edu	37	chr16	86582141	86582141	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgatcttattaaacaatcCcgttctcagtcgtggtgttg	9	8	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86582141	A	A	86582141	4	1	221	1	0	0	0	0	0	1	0	0	10027	632	22	2	891	2	MTHFSD	16	86582141	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2531375	86582141	3772612	548	169030											
JPH3	57338	broad.mit.edu	37	chr16	87636700	87636700	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccgcgactctgctgtgtcGatcgcctgagtccgttttca	12	13	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87636700	A	A	87636700	1	1	221	0	1	0	0	0	0	0	0	0	8032	1073	37	4		4	JPH3	16	87636700	5'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	1054559	87636700	2718053	549	169031											
CBFA2T3	863	broad.mit.edu	37	chr16	88951655	88951655	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggggtgcagcgggtcgcGgtctgacccgttctctttgg	16	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88951655	T	T	88951655	3	4	221	1	0	0	0	0	1	0	0	0	2724	1116	39	1	1069	1	CBFA2T3	16	88951655	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1314955	88951655	1403098	550	169032											
AIPL1	23746	broad.mit.edu	37	chr17	6330265	6330265	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagaggcctcctcgtagCggcccagcttgaagagccga	14	12	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6330265	A	A	6330265	3	1	221	1	0	0	0	0	1	0	0	0	436	768	27	3	588	3	AIPL1	17	6330265	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08		6330265	74864945	551	169033											
ACAP1	9744	broad.mit.edu	37	chr17	7245164	7245164	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggccaggcaggaatagggGagcgccgccctgggcaaggg	20	10	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7245164	C	C	7245164	1	2	221	0	1	0	0	0	0	0	0	0	118	1189	41	4		4	ACAP1	17	7245164	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	914899	7245164	73950046	552	169034											
TP53	7157	broad.mit.edu	37	chr17	7579481	7579482	+	Frame_Shift_Ins	INS	-	C	C													aggggccacggggggagcagINScctctggcattctgggagct							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7579482	C	C	7579481	7	5	221	1	0	1	1	0	0	0	0	0	16505	971	34	0	1096	0	TP53	17	7579481	Frame_Shift_Ins	INS	-	TCGA-75-6211-01A-11D-1753-08	334317	7579481	73615729	553	169035											
PIK3R6	146850	broad.mit.edu	37	chr17	8706497	8706497	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaaggccaaagctgccGtgtggagccgggccttgctc	15	12	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8706497	T	T	8706497	1	4	221	0	1	0	0	0	0	0	0	0	12018	1160	40	3		3	PIK3R6	17	8706497	3'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	1127016	8706497	72488713	554	169036											
NTN1	9423	broad.mit.edu	37	chr17	9086126	9086126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaacggaggggagggtccCaggaagttgggaggagtctg	21	5	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9086126	A	A	9086126	1	1	221	0	1	0	0	0	0	0	0	0	10795	609	21	2		2	NTN1	17	9086126	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	379629	9086126	72109084	555	169037											
USP43	124739	broad.mit.edu	37	chr17	9578299	9578299	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatccccttgcgccagacgAggtacgtgagtgtcgcggct	13	13	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9578299	T	T	9578299	3	4	221	1	0	0	0	0	1	0	0	0	17201	318	11	5	846	5	USP43	17	9578299	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	492173	9578299	71616911	556	169038											
MYH4	4622	broad.mit.edu	37	chr17	10366242	10366242	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagtaatttccccttggctGacaaatgcgaagtcatatgg	9	9	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10366242	T	T	10366242	2	4	221	1	0	0	0	0	0	0	0	1	10131	1277	45	3		3	MYH4	17	10366242	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	787943	10366242	70828968	557	169039											
MYH1	4619	broad.mit.edu	37	chr17	10417165	10417165	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagttgtcattcctcacGgtcttggcgttgccaaaggc	13	10	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10417165	T	T	10417165	2	4	221	1	0	0	0	0	0	0	0	1	10123	1103	39	1		1	MYH1	17	10417165	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	50923	10417165	70778045	558	169040											
MYH2	4620	broad.mit.edu	37	chr17	10446451	10446451	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgccagttttccagtagTgccaaagtggattctgatga	11	7	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10446451	A	A	10446451	3	1	221	1	0	0	0	0	1	0	0	0	10129	1696	59	5	5184	5	MYH2	17	10446451	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	29286	10446451	70748759	559	169041											
MYH2	4620	broad.mit.edu	37	chr17	10447283	10447283	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taactgcaattgttgcaaagTactggatgacacgcttggtg	11	7	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10447283	C	C	10447283	3	2	221	1	0	0	0	0	1	0	0	0	10129	1638	57	5	5377	5	MYH2	17	10447283	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	832	10447283	70747927	560	169042											
MYH3	4621	broad.mit.edu	37	chr17	10535312	10535312	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctggccccggagggcatCatccaggtggagctgcgtat	14	13	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10535312	G	G	10535312	3	3	221	1	0	0	0	0	1	0	0	0	10130	826	29	4	872	4	MYH3	17	10535312	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	88029	10535312	70659898	561	169043											
MYO15A	51168	broad.mit.edu	37	chr17	18038984	18038984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgaactttaaatttagcCtatctagttcaaagcacatt	4	7	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18038984	A	A	18038984	1	1	221	0	1	0	0	0	0	0	0	0	10157	696	24	2		2	MYO15A	17	18038984	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	7503672	18038984	63156226	562	169044											
PIGS	94005	broad.mit.edu	37	chr17	26890731	26890732	+	Intron	DEL	AA	-	-													ttcctcattcccagcattccAagagaggttttggaagtaag							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	26890732	-	-	26890731	6	5	221	0	1	1	0	1	0	0	0	0	11993	145	5	0		0	PIGS	17	26890731	Intron	DEL	AA	TCGA-75-6211-01A-11D-1753-08	8851747	26890731	54304479	563	169045											
NF1	4763	broad.mit.edu	37	chr17	29661829	29661845	+	Intron	DEL	ACATGCTAATAGTGTAT	-	-													tgtgattttcattgaccatcAcatgctaatagtgtattttt							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	29661845	-	-	29661829	6	5	221	0	1	1	0	1	0	0	0	0	10451	174	6	0		0	NF1	17	29661829	Intron	DEL	ACATGCTAATAGTGTAT	TCGA-75-6211-01A-11D-1753-08	2771098	29661829	51533381	564	169046											
NF1	4763	broad.mit.edu	37	chr17	29663445	29663445	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgaggtgatggcagataCtgctgtagctttggcttctg	14	7	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29663445	T	T	29663445	3	4	221	1	0	0	0	0	1	0	0	0	10451	565	20	4	6324	4	NF1	17	29663445	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1616	29663445	51531765	565	169047											
ACCN1	40	broad.mit.edu	37	chr17	32364575	32364575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggattcgctatgttccaaaCccgctgctgaacgccatttg	9	13	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32364575	A	A	32364575	1	1	221	0	1	0	0	0	0	0	0	0	128	522	18	3		3	ACCN1	17	32364575	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2701130	32364575	48830635	566	169048											
RAD51L3	5892	broad.mit.edu	37	chr17	33442288	33442288	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcatccattcacacaccaCttcaatgcctcatatttcct	2	15	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33442288	A	A	33442288	1	1	221	0	1	0	0	0	0	0	0	0	13098	580	20	3		3	RAD51L3	17	33442288	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1077713	33442288	47752922	567	169049											
KRT12	3859	broad.mit.edu	37	chr17	39018900	39018900	+	Intron	DEL	A	-	-													aaccatcactgtaagaaaacAaaggagatgacctcaaaaag							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	39018900	-	-	39018900	6	5	221	0	1	1	0	1	0	0	0	0	8520	145	5	0		0	KRT12	17	39018900	Intron	DEL	A	TCGA-75-6211-01A-11D-1753-08	5576612	39018900	42176310	568	169050											
KRTAP3-3	85293	broad.mit.edu	37	chr17	39150336	39150336	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacactgcagcctcgagagGcacagcaatccatggctatt	11	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39150336	A	A	39150336	3	1	221	1	0	0	0	0	1	0	0	0	8619	1203	42	4	286	4	KRTAP3-3	17	39150336	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	131436	39150336	42044874	569	169051											
STAT3	6774	broad.mit.edu	37	chr17	40491443	40491443	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgctgccaaaaaggaggTcaatgcacatgtgaacacag	10	10	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40491443	A	A	40491443	1	1	221	0	1	0	0	0	0	0	0	0	15384	1682	58	5		5	STAT3	17	40491443	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	1341107	40491443	40703767	570	169052											
BRCA1	672	broad.mit.edu	37	chr17	41297023	41297023	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgccatggaagagccCaagaggagatcagcgcaatt	15	9	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41297023	T	T	41297023	1	4	221	0	1	0	0	0	0	0	0	0	1507	609	21	4		4	BRCA1	17	41297023	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	805580	41297023	39898187	571	169053											
OSBPL7	114881	broad.mit.edu	37	chr17	45886818	45886818	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaatgcaggatgtcaccTtgttccactcaaagtggtcc	10	10	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45886818	A	A	45886818	3	1	221	1	0	0	0	0	1	0	0	0	11376	1609	56	5	641	5	OSBPL7	17	45886818	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	4589795	45886818	35308392	572	169054											
EPX	8288	broad.mit.edu	37	chr17	56277625	56277625	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggggcctcatggccacccCtgccaagctgaaccgtcagg	12	17	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56277625	A	A	56277625	3	1	221	1	0	0	0	0	1	0	0	0	5242	681	24	2	1615	2	EPX	17	56277625	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	10390807	56277625	24917585	573	169055											
YPEL2	388403	broad.mit.edu	37	chr17	57430918	57430919	+	Intron	INS	-	C	C													cagcaggccttccttgcctaINSccccggggagggcgcttagt							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57430919	C	C	57430918	6	5	221	0	1	1	1	0	0	0	0	0	17617	406	14	0		0	YPEL2	17	57430918	Intron	INS	-	TCGA-75-6211-01A-11D-1753-08	1153293	57430918	23764292	574	169056											
BCAS3	54828	broad.mit.edu	37	chr17	58946045	58946045	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctccattgcaataaacgGtaaggattttttcatgggtt	9	6	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58946045	T	T	58946045	5	4	221	1	0	0	0	0	0	0	1	0	1357	1275	44	3	611	3	BCAS3	17	58946045	Splice_Site	SNP	G	TCGA-75-6211-01A-11D-1753-08	1515127	58946045	22249165	575	169057											
NACA2	342538	broad.mit.edu	37	chr17	59668525	59668525	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagcagggacggtttctGtggcttcgcccggcattttg	14	10	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59668525	T	T	59668525	3	4	221	1	0	0	0	0	1	0	0	0	10228	1377	48	3	634	3	NACA2	17	59668525	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	722480	59668525	21526685	576	169058											
ABCA8	10351	broad.mit.edu	37	chr17	66913617	66913617	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaagaagaagagcaaagaaGaaagtttgttaaaaagtggc	11	2	0	5			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66913617	T	T	66913617	1	4	221	0	1	0	0	0	0	0	0	0	38	957	33	3		3	ABCA8	17	66913617	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	7245092	66913617	14281593	577	169059											
ABCA6	23460	broad.mit.edu	37	chr17	67098950	67098950	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtactttttgttttttTcataaaagcaaaaaggcaaa	6	4	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67098950	A	A	67098950	1	1	221	0	1	0	0	0	0	0	0	0	36	1798	62	5		5	ABCA6	17	67098950	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	185333	67098950	14096260	578	169060											
ABCA6	23460	broad.mit.edu	37	chr17	67108483	67108483	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctctagtaaagaaagacGaggagccaaggctcagaagt	11	7	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67108483	T	T	67108483	1	4	221	0	1	0	0	0	0	0	0	0	36	1073	37	3		3	ABCA6	17	67108483	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	9533	67108483	14086727	579	169061											
KCNJ2	3759	broad.mit.edu	37	chr17	68172048	68172048	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaacaggacattgacaacGcagactttgaaatcgtggtc	10	8	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68172048	A	A	68172048	3	1	221	1	0	0	0	0	1	0	0	0	8121	1087	38	4	870	4	KCNJ2	17	68172048	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1063565	68172048	13023162	580	169062											
QRICH2	84074	broad.mit.edu	37	chr17	74289961	74289961	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accagatcctgatgcagtccGatccgggccaagaccactgg	11	14	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74289961	A	A	74289961	3	1	221	1	0	0	0	0	1	0	0	0	12988	1057	37	4	4706	4	QRICH2	17	74289961	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	6117913	74289961	6905249	581	169063											
ENGASE	64772	broad.mit.edu	37	chr17	77081978	77081978	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcaccctctccccgccccCgggcgtccagccgtgctgag	13	20	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77081978	T	T	77081978	1	4	221	0	1	0	0	0	0	0	0	0	5160	667	23	4		4	ENGASE	17	77081978	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2792017	77081978	4113232	582	169064											
NPLOC4	55666	broad.mit.edu	37	chr17	79571701	79571701	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccagaagtcaagaaagCggtcagcgacggtgtgattc	12	9	3	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79571701	A	A	79571701	3	1	221	1	0	0	0	0	1	0	0	0	10681	768	27	3	1159	3	NPLOC4	17	79571701	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	2489723	79571701	1623509	583	169065											
CD7	924	broad.mit.edu	37	chr17	80274796	80274796	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggcccccgctggtggaGcaggtgatgttgacggaggc	18	11	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80274796	A	A	80274796	2	1	221	1	0	0	0	0	0	0	0	1	3062	963	34	4		4	CD7	17	80274796	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	703095	80274796	920414	584	169066											
COLEC12	81035	broad.mit.edu	37	chr18	348117	348117	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcttgtcatcataggtttgGcgagatgtttccatgccacc	10	10	2	1	rs143313397		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	348117	C	C	348117	2	2	221	1	0	0	0	0	0	0	0	1	3744	1190	42	4		4	COLEC12	18	348117	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08		348117	77729131	585	169067											
CEP192	55125	broad.mit.edu	37	chr18	13049430	13049430	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgcagtagttgatgtgaaGacatgttccattgacaacaa	10	6	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13049430	T	T	13049430	3	4	221	1	0	0	0	0	1	0	0	0	3281	933	33	3	2698	3	CEP192	18	13049430	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	12701313	13049430	65027818	586	169068											
ZNF521	25925	broad.mit.edu	37	chr18	22804890	22804890	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaactcctcttcactctGgagaggcatcttgcaaatcc	6	12	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22804890	A	A	22804890	4	1	221	1	0	0	0	0	0	1	0	0	18092	1357	47	4	963	4	ZNF521	18	22804890	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	9755460	22804890	55272358	587	169069											
ZNF521	25925	broad.mit.edu	37	chr18	22806795	22806795	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttgagctgtccactgagaGgttggaatctggagtcgtac	15	7	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22806795	C	C	22806795	3	2	221	1	0	0	0	0	1	0	0	0	18092	1000	35	4	2868	4	ZNF521	18	22806795	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1905	22806795	55270453	588	169070											
CDH2	1000	broad.mit.edu	37	chr18	25543368	25543368	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgtggggctgcagatcGgaccggatactggggctcgg	20	8	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25543368	T	T	25543368	2	4	221	1	0	0	0	0	0	0	0	1	3135	1124	39	1		1	CDH2	18	25543368	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	2736573	25543368	52533880	589	169071											
CDH2	1000	broad.mit.edu	37	chr18	25616525	25616525	+	Intron	DEL	C	-	-													aaaaacatgccatcaagtttCcatttcccataattccttct							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	25616525	-	-	25616525	6	5	221	0	1	1	0	1	0	0	0	0	3135	870	30	0		0	CDH2	18	25616525	Intron	DEL	C	TCGA-75-6211-01A-11D-1753-08	73157	25616525	52460723	590	169072											
DSG4	147409	broad.mit.edu	37	chr18	28964992	28964992	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcacatcatcaacaaaatGtatatttaaaaatgaattaa	2	5	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28964992	C	C	28964992	1	2	221	0	1	0	0	0	0	0	0	0	4819	1392	48	4		4	DSG4	18	28964992	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	3348467	28964992	49112256	591	169073											
DSG4	147409	broad.mit.edu	37	chr18	28979267	28979267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagcacctaacattcaGcttagtatcggagttaaaaa	7	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28979267	T	T	28979267	3	4	221	1	0	0	0	0	1	0	0	0	4819	962	34	3	1072	3	DSG4	18	28979267	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	14275	28979267	49097981	592	169074											
C18orf34	374864	broad.mit.edu	37	chr18	30803130	30803130	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcgtaattttttctttacTtttcccacctttcttctaat	1	10	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30803130	A	A	30803130	3	1	221	1	0	0	0	0	1	0	0	0	1920	1606	56	5	755	5	C18orf34	18	30803130	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1823863	30803130	47274118	593	169075											
FHOD3	80206	broad.mit.edu	37	chr18	34310772	34310772	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagaaggaatcgaggtgaGggaagctctattaagcatta	12	5	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34310772	A	A	34310772	1	1	221	0	1	0	0	0	0	0	0	0	5940	1015	35	4		4	FHOD3	18	34310772	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	3507642	34310772	43766476	594	169076											
SMAD4	4089	broad.mit.edu	37	chr18	48584869	48584869	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggctatttttttttttttTttggtagggctttgttttct	9	3	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48584869	G	G	48584869	1	3	221	0	1	0	0	0	0	0	0	0	14874	1856	64	5		5	SMAD4	18	48584869	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	14274097	48584869	29492379	595	169077											
TCF4	6925	broad.mit.edu	37	chr18	52943025	52943025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgactttctgaggcattcaGccttgccttatagaataggg	10	8	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52943025	T	T	52943025	1	4	221	0	1	0	0	0	0	0	0	0	15817	986	34	3		3	TCF4	18	52943025	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	4358156	52943025	25134223	596	169078											
ALPK2	115701	broad.mit.edu	37	chr18	56245988	56245988	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacacacAcacacacacacacacggttc	2	19	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56245988	T	T	56245988	1	4	221	0	1	0	0	0	0	0	0	0	545	174	6	5		5	ALPK2	18	56245988	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	3302963	56245988	21831260	597	169079											
MALT1	10892	broad.mit.edu	37	chr18	56411568	56411568	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcttattgttctttttcAgaacttccagaaagtatgtg	7	6	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56411568	T	T	56411568	5	4	221	1	0	0	0	0	0	0	1	0	9294	202	7	5	1810	5	MALT1	18	56411568	Splice_Site	SNP	A	TCGA-75-6211-01A-11D-1753-08	165580	56411568	21665680	598	169080											
CDH19	28513	broad.mit.edu	37	chr18	64172379	64172379	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgcgttcccgcattatGgtactactcctcagctctgc	8	14	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64172379	A	A	64172379	2	1	221	1	0	0	0	0	0	0	0	1	3134	1335	47	4		4	CDH19	18	64172379	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	7760811	64172379	13904869	599	169081											
THEG	51298	broad.mit.edu	37	chr19	362114	362114	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttttggccttctagcccGccctcccttctccaggccaa	6	18	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	362114	T	T	362114	1	4	221	0	1	0	0	0	0	0	0	0	15980	1102	38	3		3	THEG	19	362114	3'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08		362114	58766869	600	169082											
FUT3	2525	broad.mit.edu	37	chr19	5843640	5843641	+	3'UTR	DNP	CC	AA	AA													tcttctggaggggagaggctCctggcagccgtgaagcccag							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	5843641	AA	AA	5843640	1	1	221	0	1	0	0	0	0	0	0	0	6165	870	30	3		3	FUT3	19	5843640	3'UTR	DNP	CC	TCGA-75-6211-01A-11D-1753-08	5481526	5843640	53285343	601	169083											
ZNF414	84330	broad.mit.edu	37	chr19	8577564	8577564	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctgggaaaactgaggcaGcagccagggctggagcaagg	17	9	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8577564	T	T	8577564	4	4	221	1	0	0	0	0	0	1	0	0	18018	963	34	3	862	3	ZNF414	19	8577564	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2733924	8577564	50551419	602	169084											
MUC16	94025	broad.mit.edu	37	chr19	9024488	9024488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggacacagagctctgatGggtgaaacctgcatagagaa	14	7	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9024488	T	T	9024488	3	4	221	1	0	0	0	0	1	0	0	0	10067	1348	47	2	6750	2	MUC16	19	9024488	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	446924	9024488	50104495	603	169085											
MUC16	94025	broad.mit.edu	37	chr19	9059194	9059194	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgggcttggccatgacacatCctcaggacctctgctcatag	10	14	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9059194	A	A	9059194	3	1	221	1	0	0	0	0	1	0	0	0	10067	855	30	3	15599	3	MUC16	19	9059194	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	34706	9059194	50069789	604	169086											
KEAP1	9817	broad.mit.edu	37	chr19	10610099	10610099	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgcatgtagatgtactccCgggcacgctggtgcaactcc	11	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10610099	G	G	10610099	3	3	221	1	0	0	0	0	1	0	0	0	8211	652	23	4	1283	4	KEAP1	19	10610099	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1550905	10610099	48518884	605	169087											
ZNF44	51710	broad.mit.edu	37	chr19	12384274	12384274	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgtcttagatatgaacTgtaatcagggaaggctttag	10	5	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12384274	A	A	12384274	3	1	221	1	0	0	0	0	1	0	0	0	18039	1580	55	5	1055	5	ZNF44	19	12384274	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1774175	12384274	46744709	606	169088											
ZNF563	147837	broad.mit.edu	37	chr19	12432157	12432157	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catatcattcctaaaagggaGacccagaaaatcactataca	5	10	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12432157	T	T	12432157	1	4	221	0	1	0	0	0	0	0	0	0	18121	957	33	3		3	ZNF563	19	12432157	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	47883	12432157	46696826	607	169089											
CD97	976	broad.mit.edu	37	chr19	14508123	14508123	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaccaagcagaatgagCgctggaggcacctggctgtg	13	11	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14508123	T	T	14508123	1	4	221	0	1	0	0	0	0	0	0	0	3079	783	27	4		4	CD97	19	14508123	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2075966	14508123	44620860	608	169090											
OR1I1	126370	broad.mit.edu	37	chr19	15198003	15198003	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtcaccatcattggaaatGccctcattatcctggccatc	7	13	3	0	rs138224343		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15198003	T	T	15198003	3	4	221	1	0	0	0	0	1	0	0	0	11052	1319	46	3	129	3	OR1I1	19	15198003	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	689880	15198003	43930980	609	169091											
RASAL3	64926	broad.mit.edu	37	chr19	15562827	15562827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctccaccgcccagacCtgccccagggctcagatggc	10	19	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15562827	A	A	15562827	1	1	221	0	1	0	0	0	0	0	0	0	13173	696	24	2		2	RASAL3	19	15562827	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	364824	15562827	43566156	610	169092											
CYP4F22	126410	broad.mit.edu	37	chr19	15660110	15660110	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttgcagggcctgagtgcgCacacccctccccactccgca	11	18	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15660110	G	G	15660110	1	3	221	0	1	0	0	0	0	0	0	0	4222	725	25	4		4	CYP4F22	19	15660110	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	97283	15660110	43468873	611	169093											
SLC5A5	6528	broad.mit.edu	37	chr19	17988585	17988585	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacttttgtggtgggtgGcacgttggtgtggctctcca	16	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17988585	T	T	17988585	3	4	221	1	0	0	0	0	1	0	0	0	14782	1203	42	3	774	3	SLC5A5	19	17988585	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2328475	17988585	41140398	612	169094											
COPE	11316	broad.mit.edu	37	chr19	19010790	19010790	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggaggcaggtgagccgaaCacggggaccccacggtggct	18	11	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19010790	A	A	19010790	1	1	221	0	1	0	0	0	0	0	0	0	3762	493	17	3		3	COPE	19	19010790	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1022205	19010790	40118193	613	169095											
ZNF98	148198	broad.mit.edu	37	chr19	22575568	22575568	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagactttcacatatttgtCatattgaaatattttgttct	4	5	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22575568	A	A	22575568	3	1	221	1	0	0	0	0	1	0	0	0	18332	826	29	3	1253	3	ZNF98	19	22575568	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3564778	22575568	36553415	614	169096											
ZNF91	7644	broad.mit.edu	37	chr19	23545221	23545221	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcaaaatgacttgacaCattttttacatttgaagcat	7	6	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23545221	G	G	23545221	3	3	221	1	0	0	0	0	1	0	0	0	18329	478	17	4	3019	4	ZNF91	19	23545221	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	969653	23545221	35583762	615	169097											
ZNF536	9745	broad.mit.edu	37	chr19	31040344	31040344	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtcctcagggcctacagttCtgatggcttagcagccttta	11	11	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31040344	T	T	31040344	3	4	221	1	0	0	0	0	1	0	0	0	18101	913	32	4	3828	4	ZNF536	19	31040344	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	7495123	31040344	28088639	616	169098											
ZNF536	9745	broad.mit.edu	37	chr19	31040550	31040550	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgaaaaaaccctcaatGctgtatctgcaatgtagaca	6	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31040550	T	T	31040550	1	4	221	0	1	0	0	0	0	0	0	0	18101	1334	46	3		3	ZNF536	19	31040550	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	206	31040550	28088433	617	169099											
SLC7A9	11136	broad.mit.edu	37	chr19	33350773	33350773	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgcctgggactgcaggaGttcggtggcagtcatcacgg	15	12	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33350773	A	A	33350773	3	1	221	1	0	0	0	0	1	0	0	0	14819	1029	36	4	640	4	SLC7A9	19	33350773	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2310223	33350773	25778210	618	169100											
FXYD7	53822	broad.mit.edu	37	chr19	35642489	35642489	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgttttccccaaagcctatgGttattgaacctctttctact	5	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35642489	C	C	35642489	1	2	221	0	1	0	0	0	0	0	0	0	6183	1276	44	4		4	FXYD7	19	35642489	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	2291716	35642489	23486494	619	169101											
FXYD7	53822	broad.mit.edu	37	chr19	35642591	35642591	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggtgagggtgagaaaCtgtgtggttctgggagagtt	17	4	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35642591	A	A	35642591	1	1	221	0	1	0	0	0	0	0	0	0	6183	580	20	3		3	FXYD7	19	35642591	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	102	35642591	23486392	620	169102											
MAG	4099	broad.mit.edu	37	chr19	35791291	35791291	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggacaaccgcaccgtGgggctcagtgtcatgtgtga	15	11	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35791291	T	T	35791291	2	4	221	1	0	0	0	0	0	0	0	1	9250	1335	47	2		2	MAG	19	35791291	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	148700	35791291	23337692	621	169103											
NFKBID	84807	broad.mit.edu	37	chr19	36380868	36380868	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcagtgtggggtccgccCcagctgccaacaggtgccgc	15	15	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36380868	A	A	36380868	3	1	221	1	0	0	0	0	1	0	0	0	10474	623	22	2	137	2	NFKBID	19	36380868	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	589577	36380868	22748115	622	169104											
ZFP30	22835	broad.mit.edu	37	chr19	38126043	38126043	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttccacattccttacagtCatagggcttttcaccagtat	5	12	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38126043	A	A	38126043	3	1	221	1	0	0	0	0	1	0	0	0	17770	826	29	3	164	3	ZFP30	19	38126043	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1745175	38126043	21002940	623	169105											
CATSPERG	57828	broad.mit.edu	37	chr19	38858712	38858712	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagccttatctggaccacGaggaccacaaggaccaccaa	8	14	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38858712	T	T	38858712	2	4	221	1	0	0	0	0	0	0	0	1	2718	1045	37	3		3	CATSPERG	19	38858712	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	732669	38858712	20270271	624	169106											
ITPKC	80271	broad.mit.edu	37	chr19	41235228	41235228	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgcctactatggcatGgtgctgcaggatggccagac	14	11	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41235228	T	T	41235228	3	4	221	1	0	0	0	0	1	0	0	0	7989	1348	47	2	1387	2	ITPKC	19	41235228	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2376516	41235228	17893755	625	169107											
ATP1A3	478	broad.mit.edu	37	chr19	42492722	42492722	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctttcttgtcctgcgagGtggcgatacgatagctgtca	11	10	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42492722	T	T	42492722	1	4	221	0	1	0	0	0	0	0	0	0	1134	1276	44	3		3	ATP1A3	19	42492722	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1257494	42492722	16636261	626	169108											
GRIK5	2901	broad.mit.edu	37	chr19	42563598	42563598	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagtggtgtggggtccCggctgtcgtccaacatcctc	14	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42563598	T	T	42563598	3	4	221	1	0	0	0	0	1	0	0	0	6843	652	23	4	2412	4	GRIK5	19	42563598	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	70876	42563598	16565385	627	169109											
ZNF526	116115	broad.mit.edu	37	chr19	42728897	42728897	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccagtgtggtgaatgcagCcagctcatcctctcccctgg	10	14	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42728897	G	G	42728897	3	3	221	1	0	0	0	0	1	0	0	0	18094	738	26	4	344	4	ZNF526	19	42728897	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	165299	42728897	16400086	628	169110											
C19orf61	56006	broad.mit.edu	37	chr19	44251914	44251914	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggggtggtggggcggtgcCctcaggggtagaggcacctg	22	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44251914	A	A	44251914	3	1	221	1	0	0	0	0	1	0	0	0	1962	623	22	2	1245	2	C19orf61	19	44251914	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1523017	44251914	14877069	629	169111											
ZNF229	7772	broad.mit.edu	37	chr19	44946980	44946980	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattctccccccacccaccCcctctattagctgtcacctc	4	21	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44946980	A	A	44946980	1	1	221	0	1	0	0	0	0	0	0	0	17908	638	22	2		2	ZNF229	19	44946980	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	695066	44946980	14182003	630	169112											
HIF3A	64344	broad.mit.edu	37	chr19	46825041	46825041	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtcctgcagacacccctGgcccccggatccttgccttc	9	18	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46825041	T	T	46825041	3	4	221	1	0	0	0	0	1	0	0	0	7172	1348	47	2	1215	2	HIF3A	19	46825041	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1878061	46825041	12303942	631	169113											
PTGIR	5739	broad.mit.edu	37	chr19	47127082	47127082	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcgccaggcgggcgcagCggggcccgtccagctgcgcg	19	16	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47127082	A	A	47127082	3	1	221	1	0	0	0	0	1	0	0	0	12857	768	27	3	767	3	PTGIR	19	47127082	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	302041	47127082	12001901	632	169114											
ZC3H4	23211	broad.mit.edu	37	chr19	47588270	47588270	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggaaaaaggactaagaaGggaccttggcccaaacatca	11	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47588270	A	A	47588270	1	1	221	0	1	0	0	0	0	0	0	0	17696	1015	35	4		4	ZC3H4	19	47588270	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	461188	47588270	11540713	633	169115											
PLA2G4C	8605	broad.mit.edu	37	chr19	48608688	48608688	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctggagcccaggaattaTggaaacttcagagcttccca	9	10	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48608688	A	A	48608688	3	1	221	1	0	0	0	0	1	0	0	0	12098	1464	51	5	1667	5	PLA2G4C	19	48608688	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	1020418	48608688	10520295	634	169116											
CGB1	114335	broad.mit.edu	37	chr19	49540076	49540076	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaggggtgttggacgcGgcacgggaacctggccagag	20	8	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49540076	A	A	49540076	1	1	221	0	1	0	0	0	0	0	0	0	3327	1131	39	4		4	CGB1	19	49540076	5'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	931388	49540076	9588907	635	169117											
CGB8	94115	broad.mit.edu	37	chr19	49552164	49552164	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtggctcagcggagcgccCcagccctctcctctcactgg	12	17	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49552164	T	T	49552164	1	4	221	0	1	0	0	0	0	0	0	0	3331	638	22	4		4	CGB8	19	49552164	5'UTR	SNP	C	TCGA-75-6211-01A-11D-1753-08	12088	49552164	9576819	636	169118											
HRC	3270	broad.mit.edu	37	chr19	49657099	49657099	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgaccactgtgtgtcctgGggggtgatggctcatctctt	13	10	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49657099	A	A	49657099	3	1	221	1	0	0	0	0	1	0	0	0	7419	1232	43	4	727	4	HRC	19	49657099	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	104935	49657099	9471884	637	169119											
SLC6A16	28968	broad.mit.edu	37	chr19	49797775	49797775	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcatcaggaggcagtttcCctaggtttatcagctttaaa	10	8	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49797775	A	A	49797775	3	1	221	1	0	0	0	0	1	0	0	0	14793	623	22	2	965	2	SLC6A16	19	49797775	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	140676	49797775	9331208	638	169120											
RPS11	6205	broad.mit.edu	37	chr19	49999587	49999587	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcctgtcaatcagagcAgctctcgaggccccgcccaa	10	16	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49999587	T	T	49999587	1	4	221	0	1	0	0	0	0	0	0	0	13732	203	7	5		5	RPS11	19	49999587	5'Flank	SNP	A	TCGA-75-6211-01A-11D-1753-08	201812	49999587	9129396	639	169121											
SHANK1	50944	broad.mit.edu	37	chr19	51215166	51215166	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggatgcctcagggactgggtCccccaccccagcccttcatg	11	17	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51215166	A	A	51215166	1	1	221	0	1	0	0	0	0	0	0	0	14377	870	30	3		3	SHANK1	19	51215166	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1215579	51215166	7913817	640	169122											
ZNF649	65251	broad.mit.edu	37	chr19	52403490	52403490	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaaatgatgacatccaCatccaggaacctcctccttc	5	16	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52403490	A	A	52403490	1	1	221	0	1	0	0	0	0	0	0	0	18191	493	17	3		3	ZNF649	19	52403490	5'UTR	SNP	C	TCGA-75-6211-01A-11D-1753-08	1188324	52403490	6725493	641	169123											
ZNF578	147660	broad.mit.edu	37	chr19	53007907	53007907	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgtgtgtttcattttaGggacgcttgactttcaggga	12	5	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53007907	T	T	53007907	5	4	221	1	0	0	0	0	0	0	1	0	18137	1014	35	2	69	2	ZNF578	19	53007907	Splice_Site	SNP	G	TCGA-75-6211-01A-11D-1753-08	604417	53007907	6121076	642	169124											
ZNF331	55422	broad.mit.edu	37	chr19	54074835	54074835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcctttcatttcatcatGcacgtgtgggtttctgtttc	8	9	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54074835	T	T	54074835	1	4	221	0	1	0	0	0	0	0	0	0	17975	1334	46	3		3	ZNF331	19	54074835	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1066928	54074835	5054148	643	169125											
CNOT3	4849	broad.mit.edu	37	chr19	54646691	54646691	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctccaagagagtatgaagaGagtgcgtctgtagggcaggg	16	6	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54646691	T	T	54646691	1	4	221	0	1	0	0	0	0	0	0	0	3652	957	33	3		3	CNOT3	19	54646691	5'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	571856	54646691	4482292	644	169126											
LILRB1	10859	broad.mit.edu	37	chr19	55143905	55143905	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctggaaaccatgaccacCttttcccaggtgtttctaag	7	13	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55143905	A	A	55143905	1	1	221	0	1	0	0	0	0	0	0	0	8862	696	24	2		2	LILRB1	19	55143905	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	497214	55143905	3985078	645	169127											
FCAR	2204	broad.mit.edu	37	chr19	55401176	55401176	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaccgagctggagccaaCagatgtgtcagccaggattg	13	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55401176	A	A	55401176	3	1	221	1	0	0	0	0	1	0	0	0	5830	479	17	3	900	3	FCAR	19	55401176	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	257271	55401176	3727807	646	169128											
FIZ1	84922	broad.mit.edu	37	chr19	56104097	56104097	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcggccggagccagacgGgggttccccggacgccggtt	18	15	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56104097	A	A	56104097	3	1	221	1	0	0	0	0	1	0	0	0	5957	1232	43	4	284	4	FIZ1	19	56104097	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	702921	56104097	3024886	647	169129											
U2AF2	11338	broad.mit.edu	37	chr19	56172460	56172460	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgacccctgacggtctgGctgtgaccccaacgccggtg	12	16	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56172460	T	T	56172460	3	4	221	1	0	0	0	0	1	0	0	0	16949	1203	42	3	409	3	U2AF2	19	56172460	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	68363	56172460	2956523	648	169130											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701551	56701551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgaaagggtctgtctcctGtgtgtgacctcctgtggatg	13	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56701551	T	T	56701551	3	4	221	1	0	0	0	0	1	0	0	0	18368	1377	48	3	358	3	ZSCAN5B	19	56701551	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	529091	56701551	2427432	649	169131											
ZSCAN5B	342933	broad.mit.edu	37	chr19	56701905	56701905	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacattttccacagaggctCttttctggggttccttcccc	7	15	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56701905	A	A	56701905	3	1	221	1	0	0	0	0	1	0	0	0	18368	913	32	3	712	3	ZSCAN5B	19	56701905	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	354	56701905	2427078	650	169132											
USP29	57663	broad.mit.edu	37	chr19	57642636	57642636	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctatgtgtatcagaaatcTcagagaccaaaatgcaggag	9	7	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57642636	A	A	57642636	3	1	221	1	0	0	0	0	1	0	0	0	17186	1551	54	5	2595	5	USP29	19	57642636	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	940731	57642636	1486347	651	169133											
ZSCAN1	284312	broad.mit.edu	37	chr19	58565342	58565342	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagacccttccagtgtagcGtctgcgggaaggccttcccc	11	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58565342	T	T	58565342	3	4	221	1	0	0	0	0	1	0	0	0	18355	1145	40	3	1164	3	ZSCAN1	19	58565342	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	922706	58565342	563641	652	169134											
TRIB3	57761	broad.mit.edu	37	chr20	368840	368840	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagatcgtgcaactgctgtGgccactgcctcccgtcttgg	11	15	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	368840	A	A	368840	2	1	221	1	0	0	0	0	0	0	0	1	16608	1335	47	4		4	TRIB3	20	368840	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08		368840	62656680	653	169135											
SIRPB2	284759	broad.mit.edu	37	chr20	1456686	1456686	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtggaccaaaaccagaTgtagggatctaggagtttgt	13	6	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1456686	A	A	1456686	1	1	221	0	1	0	0	0	0	0	0	0	14447	1479	51	5		5	SIRPB2	20	1456686	3'UTR	SNP	T	TCGA-75-6211-01A-11D-1753-08	1087846	1456686	61568834	654	169136											
HAO1	54363	broad.mit.edu	37	chr20	7921091	7921091	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacaggttattgctatccCagatggagttcgttgttttt	9	7	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7921091	T	T	7921091	1	4	221	0	1	0	0	0	0	0	0	0	7017	609	21	4		4	HAO1	20	7921091	5'UTR	SNP	C	TCGA-75-6211-01A-11D-1753-08	6464405	7921091	55104429	655	169137											
TMX4	56255	broad.mit.edu	37	chr20	7963092	7963092	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcatccacaccagcagCcaagttgtcctcctcctctt	4	19	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7963092	A	A	7963092	3	1	221	1	0	0	0	0	1	0	0	0	16392	739	26	3	197	3	TMX4	20	7963092	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	42001	7963092	55062428	656	169138											
CST2	1470	broad.mit.edu	37	chr20	23806089	23806089	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccacatgtcaacacaaGgcacacaagccccctcttcc	5	19	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23806089	T	T	23806089	1	4	221	0	1	0	0	0	0	0	0	0	4006	1015	35	2		2	CST2	20	23806089	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	15842997	23806089	39219431	657	169139											
CST2	1470	broad.mit.edu	37	chr20	23807013	23807013	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgctgcgaatgctcttatgGatcgggcaacaaacaaggct	12	9	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23807013	C	C	23807013	1	2	221	0	1	0	0	0	0	0	0	0	4006	1189	41	4		4	CST2	20	23807013	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	924	23807013	39218507	658	169140											
TM9SF4	9777	broad.mit.edu	37	chr20	30738538	30738538	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgagtgggctcccgggggcgGcacaggcctcctccacacca	14	16	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30738538	C	C	30738538	1	2	221	0	1	0	0	0	0	0	0	0	16103	1218	42	4		4	TM9SF4	20	30738538	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	6931525	30738538	32286982	659	169141											
COMMD7	149951	broad.mit.edu	37	chr20	31291087	31291087	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcagggccccatggagCatcccacaggcctgtgagtg	14	14	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31291087	A	A	31291087	1	1	221	0	1	0	0	0	0	0	0	0	3753	725	25	3		3	COMMD7	20	31291087	3'UTR	SNP	C	TCGA-75-6211-01A-11D-1753-08	552549	31291087	31734433	660	169142											
C20orf186	149954	broad.mit.edu	37	chr20	31683053	31683053	+	Intron	DEL	G	-	-													aagatgctcagcgctggggtGgggtgctctcccccgaaccc							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31683053	-	-	31683053	6	5	221	0	1	1	0	1	0	0	0	0	2120	1363	47	0		0	C20orf186	20	31683053	Intron	DEL	G	TCGA-75-6211-01A-11D-1753-08	391966	31683053	31342467	661	169143											
TGM2	7052	broad.mit.edu	37	chr20	36779322	36779322	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcctgagatggttgggagaGacagggtgtggcccttacct	17	8	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36779322	T	T	36779322	1	4	221	0	1	0	0	0	0	0	0	0	15953	957	33	3		3	TGM2	20	36779322	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	5096269	36779322	26246198	662	169144											
LBP	3929	broad.mit.edu	37	chr20	37005411	37005411	+	3'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgaagaatgaagacatttCtgctctcagctccgggggtg	12	9	2	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37005411	T	T	37005411	1	4	221	0	1	0	0	0	0	0	0	0	8723	928	32	4		4	LBP	20	37005411	3'UTR	SNP	C	TCGA-75-6211-01A-11D-1753-08	226089	37005411	26020109	663	169145											
PLTP	5360	broad.mit.edu	37	chr20	44533835	44533835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggtgtctcccagcccCgtgctaggcactgtgggggg	16	13	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44533835	A	A	44533835	1	1	221	0	1	0	0	0	0	0	0	0	12209	667	23	1		1	PLTP	20	44533835	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	7528424	44533835	18491685	664	169146											
NCOA3	8202	broad.mit.edu	37	chr20	46280081	46280081	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactaaggacataagcttcAttacatttattgcacatgaa	5	7	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46280081	G	G	46280081	1	3	221	0	1	0	0	0	0	0	0	0	10325	232	8	5		5	NCOA3	20	46280081	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	1746246	46280081	16745439	665	169147											
PREX1	57580	broad.mit.edu	37	chr20	47292668	47292668	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatctttaaacaaaacAgaaagccccacactgacgga	5	10	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47292668	G	G	47292668	1	3	221	0	1	0	0	0	0	0	0	0	12582	203	7	5		5	PREX1	20	47292668	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	1012587	47292668	15732852	666	169148											
ARFGEF2	10564	broad.mit.edu	37	chr20	47569110	47569110	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagtttaatttgcagagccAtcttacaatttatttgaaaa	5	6	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47569110	T	T	47569110	1	4	221	0	1	0	0	0	0	0	0	0	855	232	8	5		5	ARFGEF2	20	47569110	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	276442	47569110	15456410	667	169149											
DDX27	55661	broad.mit.edu	37	chr20	47853133	47853133	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgagagcaggtactttgcAgttcagagccagatttgaat	12	7	1	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47853133	T	T	47853133	1	4	221	0	1	0	0	0	0	0	0	0	4387	203	7	5		5	DDX27	20	47853133	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	284023	47853133	15172387	668	169150											
PCK1	5105	broad.mit.edu	37	chr20	56136351	56136351	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttggcaatgcacagccCtggcaaaaggccgtcgaatg	11	11	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56136351	A	A	56136351	1	1	221	0	1	0	0	0	0	0	0	0	11675	696	24	2		2	PCK1	20	56136351	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	8283218	56136351	6889169	669	169151											
ZNF831	128611	broad.mit.edu	37	chr20	57768085	57768085	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcagggagctcaggcacaGtccccacccaagacaggagg	13	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57768085	C	C	57768085	3	2	221	1	0	0	0	0	1	0	0	0	18314	1029	36	4	2013	4	ZNF831	20	57768085	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	1631734	57768085	5257435	670	169152											
ZNF831	128611	broad.mit.edu	37	chr20	57829482	57829482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttgaaataccagcttcagGaccaagttcagctagttcac	7	11	4	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57829482	T	T	57829482	3	4	221	1	0	0	0	0	1	0	0	0	18314	1174	41	3	4736	3	ZNF831	20	57829482	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	61397	57829482	5196038	671	169153											
TAF4	6874	broad.mit.edu	37	chr20	60584201	60584201	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attaacgtagataggaaattTttacatttcttcacgttttc	5	6	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60584201	C	C	60584201	2	2	221	1	0	0	0	0	0	0	0	1	15645	1838	64	5		5	TAF4	20	60584201	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	2754719	60584201	2441319	672	169154											
ZGPAT	84619	broad.mit.edu	37	chr20	62340383	62340383	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctggagtatcacaacgccAtggtggtgggaacggaagag	15	8	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62340383	G	G	62340383	3	3	221	1	0	0	0	0	1	0	0	0	17800	217	8	5	453	5	ZGPAT	20	62340383	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	1756182	62340383	685137	673	169155											
TPD52L2	7165	broad.mit.edu	37	chr20	62519027	62519027	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggttggggcagctcccgcCggttacaccttgcccttccc	13	16	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62519027	T	T	62519027	1	4	221	0	1	0	0	0	0	0	0	0	16523	667	23	4		4	TPD52L2	20	62519027	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	178644	62519027	506493	674	169156											
TPTE	7179	broad.mit.edu	37	chr21	10934905	10934906	+	Intron	INS	-	A	A													cagtaatctgttttctatctINSacagtagcacaatatagagt							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10934906	A	A	10934905	6	5	221	0	1	1	1	0	0	0	0	0	16554	1537	53	0		0	TPTE	21	10934905	Intron	INS	-	TCGA-75-6211-01A-11D-1753-08		10934905	37194990	675	169157											
TPTE	7179	broad.mit.edu	37	chr21	10944750	10944750	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatcacaataatggcagtatCtaaaatgttaaataagtcag	6	5	3	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10944750	A	A	10944750	3	1	221	1	0	0	0	0	1	0	0	0	16554	913	32	3	1227	3	TPTE	21	10944750	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	9845	10944750	37185145	676	169158											
C21orf91	54149	broad.mit.edu	37	chr21	19165870	19165870	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaagaatctttttcttgCacttggtgagttaactcttc	7	9	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19165870	T	T	19165870	2	4	221	1	0	0	0	0	0	0	0	1	2156	697	25	4		4	C21orf91	21	19165870	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	8221120	19165870	28964025	677	169159											
NCAM2	4685	broad.mit.edu	37	chr21	22849786	22849786	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccaccaaagcccaacattAttaaaggtaagcaaaactat	5	10	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22849786	G	G	22849786	3	3	221	1	0	0	0	0	1	0	0	0	10298	449	16	5	2129	5	NCAM2	21	22849786	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	3683916	22849786	25280109	678	169160											
ADAMTS1	9510	broad.mit.edu	37	chr21	28212482	28212482	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcagttctaaaaataagCtatctcgcattcctgctaga	6	9	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28212482	A	A	28212482	1	1	221	0	1	0	0	0	0	0	0	0	255	812	28	3		3	ADAMTS1	21	28212482	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5362696	28212482	19917413	679	169161											
KRTAP13-2	337959	broad.mit.edu	37	chr21	31744439	31744439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgtagaccagattgctGgggtaggaaaagccacgtga	15	7	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31744439	T	T	31744439	2	4	221	1	0	0	0	0	0	0	0	1	8594	1335	47	2		2	KRTAP13-2	21	31744439	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	3531957	31744439	16385456	680	169162											
TIAM1	7074	broad.mit.edu	37	chr21	32559446	32559446	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggcagggctcacaccttcTgaatgtttagcaaacaacag	9	10	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32559446	A	A	32559446	1	1	221	0	1	0	0	0	0	0	0	0	16013	1595	55	5		5	TIAM1	21	32559446	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	815007	32559446	15570449	681	169163											
TRPM2	7226	broad.mit.edu	37	chr21	45825775	45825775	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagatgtgtgtgcttctGcccggcggccaggctcatcc	14	13	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45825775	T	T	45825775	1	4	221	0	1	0	0	0	0	0	0	0	16711	1334	46	3		3	TRPM2	21	45825775	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	13266329	45825775	2304120	682	169164											
COL18A1	80781	broad.mit.edu	37	chr21	46914422	46914422	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgccaggtggggcacaagCtgccacctaaccctgtcttc	11	15	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46914422	G	G	46914422	1	3	221	0	1	0	0	0	0	0	0	0	3707	812	28	4		4	COL18A1	21	46914422	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1088647	46914422	1215473	683	169165											
SLC25A18	83733	broad.mit.edu	37	chr22	18064052	18064052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatcagctgggatgtgccCgcgggagcagggcatggagg	19	9	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18064052	T	T	18064052	1	4	221	0	1	0	0	0	0	0	0	0	14594	667	23	4		4	SLC25A18	22	18064052	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08		18064052	33240514	684	169166											
PPIL2	23759	broad.mit.edu	37	chr22	22036612	22036612	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgctgtctctctcattcCtcatgcctctcaaatcgtgc	5	16	4	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22036612	T	T	22036612	1	4	221	0	1	0	0	0	0	0	0	0	12428	696	24	4		4	PPIL2	22	22036612	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3972560	22036612	29267954	685	169167											
MYO18B	84700	broad.mit.edu	37	chr22	26194047	26194047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccatctaccacctgggtgCggcgggggcctgcaaaggta	15	12	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26194047	A	A	26194047	3	1	221	1	0	0	0	0	1	0	0	0	10160	768	27	3	2546	3	MYO18B	22	26194047	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	4157435	26194047	25110519	686	169168											
PES1	23481	broad.mit.edu	37	chr22	30975989	30975989	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctgctgcatcgcagggCctttgagacaggatacccag	13	12	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30975989	A	A	30975989	1	1	221	0	1	0	0	0	0	0	0	0	11827	754	26	3		3	PES1	22	30975989	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	4781942	30975989	20328577	687	169169											
INPP5J	27124	broad.mit.edu	37	chr22	31522949	31522949	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcatcctgctgctgttcGccaagtactaccacctgccc	8	16	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31522949	A	A	31522949	3	1	221	1	0	0	0	0	1	0	0	0	7829	1087	38	4	451	4	INPP5J	22	31522949	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	546960	31522949	19781617	688	169170											
BAIAP2L2	80115	broad.mit.edu	37	chr22	38503679	38503679	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaaatgccaccagcctccTagggctgctagaggcttgaa	11	12	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38503679	A	A	38503679	1	1	221	0	1	0	0	0	0	0	0	0	1308	1537	53	5		5	BAIAP2L2	22	38503679	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	6980730	38503679	12800887	689	169171											
MEI1	150365	broad.mit.edu	37	chr22	42174740	42174740	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctaccattgctgctgagCctcctctccctgatgcagct	7	16	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42174740	G	G	42174740	3	3	221	1	0	0	0	0	1	0	0	0	9558	738	26	4	2825	4	MEI1	22	42174740	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	3671061	42174740	9129826	690	169172											
NFAM1	150372	broad.mit.edu	37	chr22	42805424	42805424	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggaggggctgcatggctgtGagcactgatcccgtaccttg	15	10	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42805424	C	C	42805424	1	2	221	0	1	0	0	0	0	0	0	0	10453	1305	45	4		4	NFAM1	22	42805424	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	630684	42805424	8499142	691	169173											
PPARA	5465	broad.mit.edu	37	chr22	46615710	46615710	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccccctccaaaccctagcGattcgttttggacgaatgcc	7	15	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46615710	A	A	46615710	2	1	221	1	0	0	0	0	0	0	0	1	12393	1072	37	4		4	PPARA	22	46615710	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	3810286	46615710	4688856	692	169174											
MOV10L1	54456	broad.mit.edu	37	chr22	50572451	50572451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggaccacaagcagacgGtgtcactttgcacttgaaca	10	11	1	2	rs148444495		TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50572451	T	T	50572451	2	4	221	1	0	0	0	0	0	0	0	1	9813	1248	44	3		3	MOV10L1	22	50572451	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	3956741	50572451	732115	693	169175											
PPP2R3B	28227	broad.mit.edu	37	chrX	299712	299712	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggggtgcgcgcgtcctgtCacacgtgcttaaggacgcgg	17	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	299712	G	G	299712	1	3	221	0	1	0	0	0	0	0	0	0	12490	841	29	4		4	PPP2R3B	23	299712	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08		299712	154970848	694	169176											
CRLF2	64109	broad.mit.edu	37	chrX	1321467	1321467	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgattgtgacaggctgaCctcatcccctttctctagcc	8	14	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1321467	A	A	1321467	1	1	221	0	1	0	0	0	0	0	0	0	3919	522	18	3		3	CRLF2	23	1321467	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1021755	1321467	153949093	695	169177											
GYG2	8908	broad.mit.edu	37	chrX	2773257	2773257	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacactcaactctgcagatgTaacacgaagtcagccgttga	8	12	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2773257	A	A	2773257	1	1	221	0	1	0	0	0	0	0	0	0	6971	1653	57	5		5	GYG2	23	2773257	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	1451790	2773257	152497303	696	169178											
PRKX	5613	broad.mit.edu	37	chrX	3592712	3592712	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgtgttgctcctgctttaGgcggatgacgtcgggaatgc	14	9	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3592712	T	T	3592712	3	4	221	1	0	0	0	0	1	0	0	0	12633	991	35	2	842	2	PRKX	23	3592712	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	819455	3592712	151677848	697	169179											
FANCB	2187	broad.mit.edu	37	chrX	14868465	14868465	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggcaacagagtgagactCtgtctcaaaaaaaacagtaa	9	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14868465	G	G	14868465	1	3	221	0	1	0	0	0	0	0	0	0	5720	928	32	4		4	FANCB	23	14868465	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	11275753	14868465	140402095	698	169180											
BEND2	139105	broad.mit.edu	37	chrX	18183163	18183163	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcgtcgggatctcctGgctttgactcctgctccagc	12	14	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18183163	A	A	18183163	3	1	221	1	0	0	0	0	1	0	0	0	1403	1348	47	4	37	4	BEND2	23	18183163	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3314698	18183163	137087397	699	169181											
SCML2	10389	broad.mit.edu	37	chrX	18260586	18260587	+	Missense_Mutation	DNP	GC	TT	TT													ctgaagaggtcggcgaggggGcctgatatctgaggatctgt							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	18260587	TT	TT	18260586	3	4	221	1	0	0	0	0	1	0	0	0	14023	1190	42	3	163	3	SCML2	23	18260586	Missense_Mutation	DNP	GC	TCGA-75-6211-01A-11D-1753-08	77423	18260586	137009974	700	169182											
CDKL5	6792	broad.mit.edu	37	chrX	18622582	18622582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaattgcggagcccagtaCcagtaggtacttcccatcta	8	13	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18622582	T	T	18622582	3	4	221	1	0	0	0	0	1	0	0	0	3187	507	18	4	1580	4	CDKL5	23	18622582	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	361996	18622582	136647978	701	169183											
PHKA2	5256	broad.mit.edu	37	chrX	18912309	18912309	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccagccaacccagctccCtggcacccccacctggtcct	7	21	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18912309	A	A	18912309	1	1	221	0	1	0	0	0	0	0	0	0	11939	696	24	2		2	PHKA2	23	18912309	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	289727	18912309	136358251	702	169184											
MAP3K15	389840	broad.mit.edu	37	chrX	19379644	19379644	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcatcagctccttgcagCcgcaaccagtctataagctc	7	14	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19379644	A	A	19379644	2	1	221	1	0	0	0	0	0	0	0	1	9341	726	26	3		3	MAP3K15	23	19379644	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	467335	19379644	135890916	703	169185											
ZNF645	158506	broad.mit.edu	37	chrX	22292161	22292161	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcaaaatggtaatccatcTgcaagtgaatttgcttctca	6	9	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22292161	A	A	22292161	2	1	221	1	0	0	0	0	0	0	0	1	18188	1567	55	5		5	ZNF645	23	22292161	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	2912517	22292161	132978399	704	169186											
POLA1	5422	broad.mit.edu	37	chrX	24807066	24807066	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggcagtgggctggacaCggcttcaaatactgccacat	13	11	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24807066	A	A	24807066	1	1	221	0	1	0	0	0	0	0	0	0	12282	551	19	3		3	POLA1	23	24807066	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	2514905	24807066	130463494	705	169187											
MAGEB2	4113	broad.mit.edu	37	chrX	30237051	30237051	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggaagtcagggtcgttGgtgcagttcctgttgtacaa	13	8	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30237051	T	T	30237051	3	4	221	1	0	0	0	0	1	0	0	0	9268	1339	47	2	356	2	MAGEB2	23	30237051	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	5429985	30237051	125033509	706	169188											
MAGEB1	4112	broad.mit.edu	37	chrX	30268940	30268940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaagatcctgtagcctgGgaggcaggaatgctgatgca	14	8	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30268940	T	T	30268940	3	4	221	1	0	0	0	0	1	0	0	0	9264	1241	43	2	332	2	MAGEB1	23	30268940	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	31889	30268940	125001620	707	169189											
NR0B1	190	broad.mit.edu	37	chrX	30326434	30326434	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggagggcaccttcctGgcctccgccggcggtgccaa	16	15	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30326434	T	T	30326434	2	4	221	1	0	0	0	0	0	0	0	1	10708	1335	47	2		2	NR0B1	23	30326434	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	57494	30326434	124944126	708	169190											
DMD	1756	broad.mit.edu	37	chrX	31200972	31200972	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccatggactggggttccagtCtcatccagtctaggaagagg	13	10	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31200972	T	T	31200972	3	4	221	1	0	0	0	0	1	0	0	0	4620	913	32	4	1338	4	DMD	23	31200972	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	874538	31200972	124069588	709	169191											
DMD	1756	broad.mit.edu	37	chrX	32305735	32305735	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttcaccctttccacaggCgttgcactttgcaatgctgc	8	14	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32305735	A	A	32305735	2	1	221	1	0	0	0	0	0	0	0	1	4620	755	27	3		3	DMD	23	32305735	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	1104763	32305735	122964825	710	169192											
DMD	1756	broad.mit.edu	37	chrX	32407765	32407765	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttctggaataatcgaaaCttcatggagacatcttgtaa	9	6	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32407765	T	T	32407765	2	4	221	1	0	0	0	0	0	0	0	1	4620	564	20	4		4	DMD	23	32407765	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	102030	32407765	122862795	711	169193											
FAM47B	170062	broad.mit.edu	37	chrX	34962613	34962613	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaccatggtacttcgagccTaagttggggaaaaagctaag	13	7	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34962613	A	A	34962613	2	1	221	1	0	0	0	0	0	0	0	1	5621	1509	53	5		5	FAM47B	23	34962613	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	2554848	34962613	120307947	712	169194											
CXorf59	286464	broad.mit.edu	37	chrX	36122645	36122645	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatcccgtgtagtgccataCtgcagcaataatatgccccc	7	14	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36122645	A	A	36122645	4	1	221	1	0	0	0	0	0	1	0	0	4148	576	20	3	908	3	CXorf59	23	36122645	Nonsense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1160032	36122645	119147915	713	169195											
CYBB	1536	broad.mit.edu	37	chrX	37664382	37664382	+	Frame_Shift_Del	DEL	C	-	-													attctcaagtcagtctggtaCaaatattgcaataacgccac							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	37664382	-	-	37664382	7	5	221	1	0	1	0	1	0	0	0	0	4166	489	17	0	1313	0	CYBB	23	37664382	Frame_Shift_Del	DEL	C	TCGA-75-6211-01A-11D-1753-08	1541737	37664382	117606178	714	169196											
CASK	8573	broad.mit.edu	37	chrX	41383314	41383314	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaaaaaaaaaaaaaatcCcgacttaaaagaagaaataa	4	4	0	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41383314	A	A	41383314	1	1	221	0	1	0	0	0	0	0	0	0	2691	638	22	2		2	CASK	23	41383314	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3718932	41383314	113887246	715	169197											
CHST7	56548	broad.mit.edu	37	chrX	46433945	46433945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttaccacggccgccctcttCcgctggcggactaacaaggt	10	16	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46433945	A	A	46433945	3	1	221	1	0	0	0	0	1	0	0	0	3440	854	30	3	581	3	CHST7	23	46433945	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	5050631	46433945	108836615	716	169198											
SSX5	6758	broad.mit.edu	37	chrX	48053755	48053755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctttgggaggctgaagCtggaggattgcttgaggcca	16	7	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48053755	A	A	48053755	1	1	221	0	1	0	0	0	0	0	0	0	15326	812	28	3		3	SSX5	23	48053755	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1619810	48053755	107216805	717	169199											
AKAP4	8852	broad.mit.edu	37	chrX	49965551	49965551	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgccatcatgtaggaccctGgaatgatgttttcttgttga	10	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49965551	T	T	49965551	1	4	221	0	1	0	0	0	0	0	0	0	453	1363	47	2		2	AKAP4	23	49965551	5'UTR	SNP	G	TCGA-75-6211-01A-11D-1753-08	1911796	49965551	105305009	718	169200											
HUWE1	10075	broad.mit.edu	37	chrX	53652935	53652935	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttaattcaacatccagcCtgtgctccatagagatggat	7	12	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53652935	G	G	53652935	1	3	221	0	1	0	0	0	0	0	0	0	7531	696	24	4		4	HUWE1	23	53652935	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	3687384	53652935	101617625	719	169201											
PHF8	23133	broad.mit.edu	37	chrX	54037540	54037540	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccaaaccctcccagaagCacccaagggaagacctgtgg	9	16	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54037540	T	T	54037540	1	4	221	0	1	0	0	0	0	0	0	0	11935	725	25	4		4	PHF8	23	54037540	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	384605	54037540	101233020	720	169202											
MAGED2	10916	broad.mit.edu	37	chrX	54841649	54841649	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactatggcttaatccctcTatgctccttctgatggttat	6	10	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54841649	G	G	54841649	1	3	221	0	1	0	0	0	0	0	0	0	9276	1537	53	5		5	MAGED2	23	54841649	Intron	SNP	T	TCGA-75-6211-01A-11D-1753-08	804109	54841649	100428911	721	169203											
APEX2	27301	broad.mit.edu	37	chrX	55033653	55033653	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agacttcagaagccaaagatGagaaggagttacggacctca	11	8	2	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55033653	T	T	55033653	4	4	221	1	0	0	0	0	0	1	0	0	772	1291	45	3	1364	3	APEX2	23	55033653	Nonsense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	192004	55033653	100236907	722	169204											
RRAGB	10325	broad.mit.edu	37	chrX	55782220	55782220	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctgctttgaggagtagcaGaggatgatgtaactattttg	13	4	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55782220	T	T	55782220	1	4	221	0	1	0	0	0	0	0	0	0	13784	957	33	3		3	RRAGB	23	55782220	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	748567	55782220	99488340	723	169205											
SPIN3	169981	broad.mit.edu	37	chrX	57021331	57021331	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acacactgccgtggccagcgCccgtcctggaccgctgccct	11	19	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57021331	T	T	57021331	3	4	221	1	0	0	0	0	1	0	0	0	15173	739	26	4	730	4	SPIN3	23	57021331	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1239111	57021331	98249229	724	169206											
MTMR8	55613	broad.mit.edu	37	chrX	63574525	63574525	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtactcaataaatgtctgttGaatggctgaatgttgaatgg	11	4	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63574525	T	T	63574525	1	4	221	0	1	0	0	0	0	0	0	0	10043	1305	45	3		3	MTMR8	23	63574525	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	6553194	63574525	91696035	725	169207											
LAS1L	81887	broad.mit.edu	37	chrX	64737913	64737913	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaagctcctcttttctgGgccagaagcctagcattctc	8	13	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64737913	T	T	64737913	2	4	221	1	0	0	0	0	0	0	0	1	8708	1219	43	2		2	LAS1L	23	64737913	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	1163388	64737913	90532647	726	169208											
HEPH	9843	broad.mit.edu	37	chrX	65413572	65413572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacatcacttaggagcaCattgtagaccagcatctccc	8	13	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65413572	A	A	65413572	1	1	221	0	1	0	0	0	0	0	0	0	7121	493	17	3		3	HEPH	23	65413572	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	675659	65413572	89856988	727	169209											
STARD8	9754	broad.mit.edu	37	chrX	67937113	67937113	+	Frame_Shift_Del	DEL	G	-	-													agccactgggccttccagcaGgaaagtaagtgctggtctcc							TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67937113	-	-	67937113	7	5	221	1	0	1	0	1	0	0	0	0	15381	991	35	0	379	0	STARD8	23	67937113	Frame_Shift_Del	DEL	G	TCGA-75-6211-01A-11D-1753-08	2523541	67937113	87333447	728	169210											
PDZD11	51248	broad.mit.edu	37	chrX	69508374	69508374	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtaccctctgcaagacaCagcaaccccagaaattttac	7	13	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69508374	A	A	69508374	1	1	221	0	1	0	0	0	0	0	0	0	11794	493	17	3		3	PDZD11	23	69508374	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	1571261	69508374	85762186	729	169211											
ABCB7	22	broad.mit.edu	37	chrX	74289036	74289036	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taggaaaccccagttttaaaCcacagtaatcattttgataa	5	8	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74289036	A	A	74289036	1	1	221	0	1	0	0	0	0	0	0	0	46	522	18	3		3	ABCB7	23	74289036	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	4780662	74289036	80981524	730	169212											
ATRX	546	broad.mit.edu	37	chrX	76920220	76920220	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaagatccatcctcatcaGaggaaagattggctttaatt	8	8	2	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76920220	T	T	76920220	3	4	221	1	0	0	0	0	1	0	0	0	1212	942	33	3	3721	3	ATRX	23	76920220	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	2631184	76920220	78350340	731	169213											
MAGT1	84061	broad.mit.edu	37	chrX	77112246	77112246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaaagctgcaaaagccCatccagttttattaaagaga	6	10	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77112246	A	A	77112246	3	1	221	1	0	0	0	0	1	0	0	0	9288	595	21	2	375	2	MAGT1	23	77112246	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	192026	77112246	78158314	732	169214											
ATP7A	538	broad.mit.edu	37	chrX	77275806	77275806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttccattaaccagaacGggtcactgcttatctgcgca	9	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77275806	T	T	77275806	3	4	221	1	0	0	0	0	1	0	0	0	1194	1116	39	1	2738	1	ATP7A	23	77275806	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	163560	77275806	77994754	733	169215											
ZCCHC5	203430	broad.mit.edu	37	chrX	77912628	77912628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccattcagcttcactgatGtgtgggcagttgattgcagc	11	10	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77912628	T	T	77912628	3	4	221	1	0	0	0	0	1	0	0	0	17717	1368	48	3	141	3	ZCCHC5	23	77912628	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	636822	77912628	77357932	734	169216											
P2RY10	27334	broad.mit.edu	37	chrX	78216521	78216521	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcctgtttgccatttccCatcctgagaagcacagactt	7	13	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78216521	A	A	78216521	2	1	221	1	0	0	0	0	0	0	0	1	11441	581	21	2		2	P2RY10	23	78216521	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	303893	78216521	77054039	735	169217											
CPXCR1	53336	broad.mit.edu	37	chrX	88008544	88008544	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcccaatatgatctatcaGgtagaaaccaacccaataaa	5	10	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88008544	T	T	88008544	3	4	221	1	0	0	0	0	1	0	0	0	3868	991	35	2	131	2	CPXCR1	23	88008544	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	9792023	88008544	67262016	736	169218											
PCDH11X	27328	broad.mit.edu	37	chrX	91873354	91873354	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccattctgatgcctgctgGatgccggcatctctggatca	12	12	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91873354	T	T	91873354	3	4	221	1	0	0	0	0	1	0	0	0	11602	1183	41	3	3607	3	PCDH11X	23	91873354	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3864810	91873354	63397206	737	169219											
SYTL4	94121	broad.mit.edu	37	chrX	99945018	99945018	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctccataccaagagcccAtcaagggtactcagaacttc	6	14	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99945018	T	T	99945018	1	4	221	0	1	0	0	0	0	0	0	0	15604	232	8	5		5	SYTL4	23	99945018	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	8071664	99945018	55325542	738	169220											
TRMT2B	79979	broad.mit.edu	37	chrX	100296271	100296271	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtccagcaccattctcctgGaaaggaggggtaaagactta	11	9	1	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100296271	A	A	100296271	1	1	221	0	1	0	0	0	0	0	0	0	16691	1189	41	4		4	TRMT2B	23	100296271	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	351253	100296271	54974289	739	169221											
BTK	695	broad.mit.edu	37	chrX	100615743	100615743	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtagtggctttttcaagaTctatgtagttaggagaaaag	12	4	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100615743	C	C	100615743	3	2	221	1	0	0	0	0	1	0	0	0	1567	1449	50	5	1438	5	BTK	23	100615743	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	319472	100615743	54654817	740	169222											
BTK	695	broad.mit.edu	37	chrX	100617635	100617635	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcccatcgatccagaagCaagggtgatatttctgaacc	9	11	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100617635	G	G	100617635	3	3	221	1	0	0	0	0	1	0	0	0	1567	710	25	4	1601	4	BTK	23	100617635	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1892	100617635	54652925	741	169223											
BTK	695	broad.mit.edu	37	chrX	100630266	100630266	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgctctccagaatcactgCggccatagcttcttctttct	7	13	5	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100630266	A	A	100630266	3	1	221	1	0	0	0	0	1	0	0	0	1567	768	27	3	2044	3	BTK	23	100630266	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	12631	100630266	54640294	742	169224											
NXF2B	728343	broad.mit.edu	37	chrX	101576802	101576802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcgaccccaaggactcagCcccgtgagtatcacggctca	9	16	3	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101576802	A	A	101576802	3	1	221	1	0	0	0	0	1	0	0	0	10879	739	26	3	1352	3	NXF2B	23	101576802	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	946536	101576802	53693758	743	169225											
GLRA4	441509	broad.mit.edu	37	chrX	102968324	102968324	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgcgcccttatgaatccAgggtttctgattgcctatct	8	12	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102968324	T	T	102968324	1	4	221	0	1	0	0	0	0	0	0	0	6521	203	7	5		5	GLRA4	23	102968324	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	1391522	102968324	52302236	744	169226											
IL1RAPL2	26280	broad.mit.edu	37	chrX	104650926	104650926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaggacaaaagtgtctgGggaaataagcaatatcatag	10	4	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104650926	T	T	104650926	1	4	221	0	1	0	0	0	0	0	0	0	7732	1247	43	2		2	IL1RAPL2	23	104650926	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1682602	104650926	50619634	745	169227											
TSC22D3	1831	broad.mit.edu	37	chrX	107018416	107018416	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaggtagcaggggtcccgCagcaccggctctagcgaatc	13	13	2	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107018416	A	A	107018416	2	1	221	1	0	0	0	0	0	0	0	1	16734	697	25	3		3	TSC22D3	23	107018416	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	2367490	107018416	48252144	746	169228											
GUCY2F	2986	broad.mit.edu	37	chrX	108673766	108673766	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctcccaccctccacctcAcagacattctgcattctgag	4	18	4	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108673766	T	T	108673766	1	4	221	0	1	0	0	0	0	0	0	0	6963	174	6	5		5	GUCY2F	23	108673766	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	1655350	108673766	46596794	747	169229											
ZCCHC16	340595	broad.mit.edu	37	chrX	111698402	111698402	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatcaatcctctgatgaAtgctaagtttgacaaaggag	10	6	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111698402	T	T	111698402	3	4	221	1	0	0	0	0	1	0	0	0	17710	101	4	5	448	5	ZCCHC16	23	111698402	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	3024636	111698402	43572158	748	169230											
WDR44	54521	broad.mit.edu	37	chrX	117526694	117526694	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctgatcaagctactgccAgtcctattgtggctagaaca	8	11	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117526694	C	C	117526694	3	2	221	1	0	0	0	0	1	0	0	0	17423	188	7	5	300	5	WDR44	23	117526694	Missense_Mutation	SNP	A	TCGA-75-6211-01A-11D-1753-08	5828292	117526694	37743866	749	169231											
KIAA1210	57481	broad.mit.edu	37	chrX	118221771	118221771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgcctcaatagcagccCgctcgaaatttgaggacagt	10	11	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118221771	A	A	118221771	3	1	221	1	0	0	0	0	1	0	0	0	8284	652	23	1	1723	1	KIAA1210	23	118221771	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	695077	118221771	37048789	750	169232											
LAMP2	3920	broad.mit.edu	37	chrX	119576490	119576490	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atacatgctgatgttcacttCcttcagataaaatcggtttt	6	8	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119576490	G	G	119576490	3	3	221	1	0	0	0	0	1	0	0	0	8690	864	30	4	643	4	LAMP2	23	119576490	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1354719	119576490	35694070	751	169233											
GRIA3	2892	broad.mit.edu	37	chrX	122616858	122616858	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatgctacatacagagaagGctacaacgtgtatggaacag	10	7	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122616858	A	A	122616858	3	1	221	1	0	0	0	0	1	0	0	0	6835	1203	42	4	2825	4	GRIA3	23	122616858	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	3040368	122616858	32653702	752	169234											
THOC2	57187	broad.mit.edu	37	chrX	122766629	122766629	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcaaatgatgtgcaaaaatGacatttttcaaattataaca	4	5	2	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122766629	C	C	122766629	1	2	221	0	1	0	0	0	0	0	0	0	15988	1305	45	4		4	THOC2	23	122766629	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	149771	122766629	32503931	753	169235											
ODZ1	10178	broad.mit.edu	37	chrX	123556416	123556416	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagaaatttgcagcacaaTgttgttatccaagacataca	6	9	1	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123556416	A	A	123556416	3	1	221	1	0	0	0	0	1	0	0	0	10929	1464	51	5	4057	5	ODZ1	23	123556416	Missense_Mutation	SNP	T	TCGA-75-6211-01A-11D-1753-08	789787	123556416	31714144	754	169236											
OCRL	4952	broad.mit.edu	37	chrX	128682712	128682712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctcctgtagcagccataCaaattagcactgtttcccaa	6	12	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128682712	A	A	128682712	1	1	221	0	1	0	0	0	0	0	0	0	10918	493	17	3		3	OCRL	23	128682712	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5126296	128682712	26587848	755	169237											
XPNPEP2	7512	broad.mit.edu	37	chrX	128890490	128890490	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagctgaaccgcaagctgtcCtcagatgagatgtacctgct	11	11	1	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	128890490	G	G	128890490	2	3	221	1	0	0	0	0	0	0	0	1	17570	668	24	4		4	XPNPEP2	23	128890490	Silent	SNP	C	TCGA-75-6211-01A-11D-1753-08	207778	128890490	26380070	756	169238											
AIFM1	9131	broad.mit.edu	37	chrX	129290567	129290567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggaacatgccatcgctgGaacaagttgcctaagaaaca	10	9	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129290567	T	T	129290567	3	4	221	1	0	0	0	0	1	0	0	0	426	1165	41	3	1931	3	AIFM1	23	129290567	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	400077	129290567	25979993	757	169239											
OR13H1	347468	broad.mit.edu	37	chrX	130678918	130678918	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaccccctgatatatagcCtgagaaaaaaagatgttaaa	7	7	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130678918	A	A	130678918	3	1	221	1	0	0	0	0	1	0	0	0	11037	680	24	2	873	2	OR13H1	23	130678918	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1388351	130678918	24591642	758	169240											
GPC3	2719	broad.mit.edu	37	chrX	132887866	132887866	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctgaaggaagatcctagtGacttgcagtgacttggaaac	12	8	0	4			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132887866	T	T	132887866	2	4	221	1	0	0	0	0	0	0	0	1	6664	1277	45	3		3	GPC3	23	132887866	Silent	SNP	G	TCGA-75-6211-01A-11D-1753-08	2208948	132887866	22382694	759	169241											
FAM122B	159090	broad.mit.edu	37	chrX	133922956	133922956	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagattttccaaggagaaagGtatagactctaatattctgc	8	7	2	3			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133922956	A	A	133922956	1	1	221	0	1	0	0	0	0	0	0	0	5466	1276	44	4		4	FAM122B	23	133922956	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	1035090	133922956	21347604	760	169242											
FAM122C	159091	broad.mit.edu	37	chrX	133988158	133988158	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatggaaacgacagcaatGctggatcttctggtaattcg	11	7	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133988158	T	T	133988158	3	4	221	1	0	0	0	0	1	0	0	0	5467	1319	46	3	1067	3	FAM122C	23	133988158	Missense_Mutation	SNP	G	TCGA-75-6211-01A-11D-1753-08	65202	133988158	21282402	761	169243											
GPR112	139378	broad.mit.edu	37	chrX	135431279	135431279	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttccttgttagaaaagaCttccttaacaaactatgcca	5	10	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135431279	T	T	135431279	3	4	221	1	0	0	0	0	1	0	0	0	6694	565	20	4	5424	4	GPR112	23	135431279	Missense_Mutation	SNP	C	TCGA-75-6211-01A-11D-1753-08	1443121	135431279	19839281	762	169244											
MAGEC3	139081	broad.mit.edu	37	chrX	140982941	140982941	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggggggcgctgaggagggCaggaagaagtggagtgcggg	24	5	0	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140982941	A	A	140982941	1	1	221	0	1	0	0	0	0	0	0	0	9274	725	25	3		3	MAGEC3	23	140982941	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	5551662	140982941	14287619	763	169245											
SPANXN3	139067	broad.mit.edu	37	chrX	142596980	142596980	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggctaagactctgtttggTacctcttgcatctggtaaga	12	8	3	2			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142596980	A	A	142596980	2	1	221	1	0	0	0	0	0	0	0	1	15108	1625	57	5		5	SPANXN3	23	142596980	Silent	SNP	T	TCGA-75-6211-01A-11D-1753-08	1614039	142596980	12673580	764	169246											
FMR1	2332	broad.mit.edu	37	chrX	147009952	147009952	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttttttcttatattgtttCctttttttaaacccaggttg	4	6	1	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147009952	A	A	147009952	1	1	221	0	1	0	0	0	0	0	0	0	6018	870	30	3		3	FMR1	23	147009952	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	4412972	147009952	8260608	765	169247											
FMR1	2332	broad.mit.edu	37	chrX	147013828	147013828	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttagttttaacctaaaactAttaataatttatggacccct	4	7	0	0			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147013828	G	G	147013828	1	3	221	0	1	0	0	0	0	0	0	0	6018	464	16	5		5	FMR1	23	147013828	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	3876	147013828	8256732	766	169248											
PNCK	139728	broad.mit.edu	37	chrX	152937712	152937712	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggggtgctctgtcctgAggccctggggaaagcctcct	14	12	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152937712	T	T	152937712	1	4	221	0	1	0	0	0	0	0	0	0	12240	319	11	5		5	PNCK	23	152937712	Intron	SNP	A	TCGA-75-6211-01A-11D-1753-08	5923884	152937712	2332848	767	169249											
SLC6A8	6535	broad.mit.edu	37	chrX	152957095	152957095	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggagtggccctgaggggGcaccagggtgttgcctggca	20	9	0	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152957095	A	A	152957095	1	1	221	0	1	0	0	0	0	0	0	0	14804	1218	42	4		4	SLC6A8	23	152957095	Intron	SNP	G	TCGA-75-6211-01A-11D-1753-08	19383	152957095	2313465	768	169250											
PLXNB3	5365	broad.mit.edu	37	chrX	153036344	153036344	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcaacatttccgagtgagCcatcaggagggaaggggaca	13	9	2	1			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153036344	T	T	153036344	1	4	221	0	1	0	0	0	0	0	0	0	12220	754	26	4		4	PLXNB3	23	153036344	Intron	SNP	C	TCGA-75-6211-01A-11D-1753-08	79249	153036344	2234216	769	169251											
CD5L	922	broad.mit.edu	37	chr1	157801719	157801719	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaagcagagggcaggcgGggccaggggggccaggtcaa	20	9	1	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157801719	T	T	157801719	1	4	222	0	1	0	0	0	0	0	0	0	3057	1247	43	2		2	CD5L	1	157801719	3'UTR	SNP	G	TCGA-75-6212-01A-11D-1753-08		157801719	91448902	1	169252											
OBSCN	84033	broad.mit.edu	37	chr1	228459865	228459865	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaggccaggcggacgccGgggagtacagctgcgaggct	19	11	0	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228459865	A	A	228459865	1	1	222	0	1	0	0	0	0	0	0	0	10907	1131	39	4		4	OBSCN	1	228459865	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08	70658146	228459865	20790756	2	169253											
PGBD5	79605	broad.mit.edu	37	chr1	230486682	230486682	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctcttcaccgaccctccCcgggctcagcccagggctca	8	21	4	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230486682	A	A	230486682	1	1	222	0	1	0	0	0	0	0	0	0	11879	638	22	2		2	PGBD5	1	230486682	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08	2026817	230486682	18763939	3	169254											
PDIA6	10130	broad.mit.edu	37	chr2	10930094	10930094	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttacagtttctaaaaccAccttataggtaatttttttt	3	7	2	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10930094	C	C	10930094	1	2	222	0	1	0	0	0	0	0	0	0	11766	174	6	5		5	PDIA6	2	10930094	Intron	SNP	A	TCGA-75-6212-01A-11D-1753-08		10930094	232269279	4	169255											
NEB	4703	broad.mit.edu	37	chr2	152512305	152512305	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttcctcacgtgggagctGtgtggacggccactgttctc	12	13	2	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152512305	A	A	152512305	1	1	222	0	1	0	0	0	0	0	0	0	10397	1392	48	4		4	NEB	2	152512305	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08	141582211	152512305	90687068	5	169256											
LASS6	253782	broad.mit.edu	37	chr2	169622897	169622897	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctatccctgtcctgagtgcCtcttgcctgttggaggggca	12	12	2	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169622897	A	A	169622897	1	1	222	0	1	0	0	0	0	0	0	0	8715	696	24	2		2	LASS6	2	169622897	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08	17110592	169622897	73576476	6	169257											
ANKAR	150709	broad.mit.edu	37	chr2	190593381	190593381	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgtatcttgcttttctttAtcaggaggtgaagctgtcat	9	7	4	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190593381	T	T	190593381	1	4	222	0	1	0	0	0	0	0	0	0	623	464	16	5		5	ANKAR	2	190593381	Intron	SNP	A	TCGA-75-6212-01A-11D-1753-08	20970484	190593381	52605992	7	169258											
SP140L	93349	broad.mit.edu	37	chr2	231222646	231222646	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttccattccttgagggcctCcgcgatcgggaactcatcac	9	14	2	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231222646	T	T	231222646	2	4	222	1	0	0	0	0	0	0	0	1	15077	842	30	4		4	SP140L	2	231222646	Silent	SNP	C	TCGA-75-6212-01A-11D-1753-08	40629265	231222646	11976727	8	169259											
C2orf57	165100	broad.mit.edu	37	chr2	232458074	232458074	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacaagatgtcacaaatgGcgagtgttcctgagagagag	13	6	1	4			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	232458074	A	A	232458074	3	1	222	1	0	0	0	0	1	0	0	0	2200	1203	42	4	414	4	C2orf57	2	232458074	Missense_Mutation	SNP	G	TCGA-75-6212-01A-11D-1753-08	1235428	232458074	10741299	9	169260											
KIF9	64147	broad.mit.edu	37	chr3	47288871	47288871	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggttccttacgtcgatctCgtccagtgtcccctccaggt	11	14	1	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47288871	T	T	47288871	3	4	222	1	0	0	0	0	1	0	0	0	8380	893	31	4	1187	4	KIF9	3	47288871	Missense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08		47288871	150733559	10	169261											
RNF123	63891	broad.mit.edu	37	chr3	49737606	49737606	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccatgtgccagggcaggggTgccttgaccagagtggaagg	18	9	0	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49737606	G	G	49737606	1	3	222	0	1	0	0	0	0	0	0	0	13544	1711	59	5		5	RNF123	3	49737606	Intron	SNP	T	TCGA-75-6212-01A-11D-1753-08	2448735	49737606	148284824	11	169262											
POC1A	25886	broad.mit.edu	37	chr3	52159093	52159093	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaatcagctcagattccCttcttcaccattccattcga	4	14	4	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52159093	A	A	52159093	1	1	222	0	1	0	0	0	0	0	0	0	12270	696	24	2		2	POC1A	3	52159093	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08	2421487	52159093	145863337	12	169263											
PRKCD	5580	broad.mit.edu	37	chr3	53217607	53217607	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgtgaaggtgcgtgccAccccgcccctgggctgcagg	15	13	0	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53217607	C	C	53217607	1	2	222	0	1	0	0	0	0	0	0	0	12615	174	6	5		5	PRKCD	3	53217607	Intron	SNP	A	TCGA-75-6212-01A-11D-1753-08	1058514	53217607	144804823	13	169264											
OPA1	4976	broad.mit.edu	37	chr3	193360467	193360467	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttggatttgtgcaatgcaGtagccctgtctagaccacat	9	10	2	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193360467	A	A	193360467	1	1	222	0	1	0	0	0	0	0	0	0	10965	1044	36	4		4	OPA1	3	193360467	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08	140142860	193360467	4661963	14	169265											
AFF1	4299	broad.mit.edu	37	chr4	87968334	87968334	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgccttccccagttcCccctttgtcacctatacatt	3	17	2	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87968334	T	T	87968334	3	4	222	1	0	0	0	0	1	0	0	0	356	623	22	4	678	4	AFF1	4	87968334	Missense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08		87968334	103185942	15	169266											
FGA	2243	broad.mit.edu	37	chr4	155508070	155508070	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttaatatcaatgtccaCctagagagaggggagaaaaa	10	6	2	3			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155508070	T	T	155508070	3	4	222	1	0	0	0	0	1	0	0	0	5887	521	18	4	2141	4	FGA	4	155508070	Missense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08	67539736	155508070	35646206	16	169267											
CCDC125	202243	broad.mit.edu	37	chr5	68616341	68616341	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagctgcacgtctgactcActtgatgatcttgccacctt	8	13	3	4			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68616341	C	C	68616341	3	2	222	1	0	0	0	0	1	0	0	0	2787	156	6	5	1552	5	CCDC125	5	68616341	Missense_Mutation	SNP	A	TCGA-75-6212-01A-11D-1753-08		68616341	112298919	17	169268											
PCDHB3	56132	broad.mit.edu	37	chr5	140482147	140482147	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcgcgacgcggccaagcaCaggctggtggtgctggtcaa	17	11	1	0	rs144773246	byFrequency	TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140482147	G	G	140482147	3	3	222	1	0	0	0	0	1	0	0	0	11637	477	17	4	1916	4	PCDHB3	5	140482147	Missense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08	71865806	140482147	40433113	18	169269											
PDE6A	5145	broad.mit.edu	37	chr5	149283437	149283437	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctactagacagaaaaGtcaccttataaacattactt	6	8	1	3			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149283437	A	A	149283437	1	1	222	0	1	0	0	0	0	0	0	0	11739	1044	36	4		4	PDE6A	5	149283437	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08	8801290	149283437	31631823	19	169270											
PAK1IP1	55003	broad.mit.edu	37	chr6	10697809	10697809	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttgtatctattttataGcagattctttgctagaagat	7	4	2	3			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10697809	T	T	10697809	1	4	222	0	1	0	0	0	0	0	0	0	11494	986	34	3		3	PAK1IP1	6	10697809	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08		10697809	160417258	20	169271											
SCML4	256380	broad.mit.edu	37	chr6	108042097	108042097	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagcgaggaggaggggtgCaaggagcccctgtggttaaa	17	7	0	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108042097	A	A	108042097	3	1	222	1	0	0	0	0	1	0	0	0	14024	709	25	3	473	3	SCML4	6	108042097	Missense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08	97344288	108042097	63072970	21	169272											
MED23	9439	broad.mit.edu	37	chr6	131944569	131944569	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgttctttcccactcaagAgtgtcagagtttatcaggga	10	8	4	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131944569	G	G	131944569	2	3	222	1	0	0	0	0	0	0	0	1	9534	291	11	5		5	MED23	6	131944569	Silent	SNP	A	TCGA-75-6212-01A-11D-1753-08	23902472	131944569	39170498	22	169273											
HOXA10	3206	broad.mit.edu	37	chr7	27219207	27219207	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagccctgcttagacatcGgccacctccccactcccgcc	8	20	0	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27219207	T	T	27219207	1	4	222	0	1	0	0	0	0	0	0	0	7356	1131	39	1		1	HOXA10	7	27219207	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08		27219207	131919456	23	169274											
EGFR	1956	broad.mit.edu	37	chr7	55242466	55242474	+	In_Frame_Del	DEL	GAATTAAGA	-	-													aaattcccgtcgctatcaagGaattaagagaagcaacatct					rs121913426		TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55242474	-	-	55242466	7	5	222	1	0	1	0	1	0	0	0	0	5007	1175	41	0	2574	0	EGFR	7	55242466	In_Frame_Del	DEL	GAATTAAGA	TCGA-75-6212-01A-11D-1753-08	28023259	55242466	103896197	24	169275											
ELN	2006	broad.mit.edu	37	chr7	73457279	73457279	+	Intron	DEL	C	-	-													ccttctgcctccccactgttCcttacgcaatgcctcacctg							TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73457279	-	-	73457279	6	5	222	0	1	1	0	1	0	0	0	0	5113	870	30	0		0	ELN	7	73457279	Intron	DEL	C	TCGA-75-6212-01A-11D-1753-08	18214813	73457279	85681384	25	169276											
GTF2I	2969	broad.mit.edu	37	chr7	74114596	74114608	+	Frame_Shift_Del	DEL	CACAGTGGTACCT	-	-													gggaaagctttaggcaaatcCacagtggtacctgtaccata							TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74114608	-	-	74114596	7	5	222	1	0	1	0	1	0	0	0	0	6932	581	21	0	407	0	GTF2I	7	74114596	Frame_Shift_Del	DEL	CACAGTGGTACCT	TCGA-75-6212-01A-11D-1753-08	657317	74114596	85024067	26	169277											
SEMA3D	223117	broad.mit.edu	37	chr7	84697465	84697465	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtcaaaaaataactcttaGaaaaccatttaaggataaga	5	6	2	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84697465	T	T	84697465	1	4	222	0	1	0	0	0	0	0	0	0	14140	957	33	3		3	SEMA3D	7	84697465	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08	10582869	84697465	74441198	27	169278											
KIAA0146	23514	broad.mit.edu	37	chr8	48504916	48504916	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatatcgaaacatattcttCccaacttgtctacattagga	4	9	2	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48504916	A	A	48504916	1	1	222	0	1	0	0	0	0	0	0	0	8227	870	30	3		3	KIAA0146	8	48504916	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08		48504916	97859106	28	169279											
VPS13B	157680	broad.mit.edu	37	chr8	100836132	100836132	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgaagacaagactacaAtaatcaataatacaccatat	4	7	1	4			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100836132	G	G	100836132	3	3	222	1	0	0	0	0	1	0	0	0	17317	101	4	5	9723	5	VPS13B	8	100836132	Missense_Mutation	SNP	A	TCGA-75-6212-01A-11D-1753-08	52331216	100836132	45527890	29	169280											
AIF1L	83543	broad.mit.edu	37	chr9	133989898	133989898	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatttgcccacaagggagCcactgggtccccacagggag	13	13	1	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133989898	T	T	133989898	1	4	222	0	1	0	0	0	0	0	0	0	425	754	26	4		4	AIF1L	9	133989898	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08		133989898	7223533	30	169281											
CUBN	8029	broad.mit.edu	37	chr10	16911557	16911557	+	Intron	DEL	G	-	-													aatcataatcaggtgggggtGgggggggggcggggaaatta							TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16911557	-	-	16911557	6	5	222	0	1	1	0	1	0	0	0	0	4084	1363	47	0		0	CUBN	10	16911557	Intron	DEL	G	TCGA-75-6212-01A-11D-1753-08		16911557	118623190	31	169282											
CYP26A1	1592	broad.mit.edu	37	chr10	94834307	94834307	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgggggcaggaggcgaCggctggacagggagggggac	24	6	0	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94834307	A	A	94834307	1	1	222	0	1	0	0	0	0	0	0	0	4188	551	19	3		3	CYP26A1	10	94834307	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08	77922750	94834307	40700440	32	169283											
FOSL1	8061	broad.mit.edu	37	chr11	65660407	65660407	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcagaggatgggtctcCgctgctgctgctactcttgc	15	11	3	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65660407	A	A	65660407	4	1	222	1	0	0	0	0	0	1	0	0	6045	661	23	1	53	1	FOSL1	11	65660407	Nonsense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08		65660407	69346109	33	169284											
INTS4	92105	broad.mit.edu	37	chr11	77639373	77639373	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaagaaatgagtaacaaAttagaaacactcacctctag	7	7	2	4			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77639373	G	G	77639373	1	3	222	0	1	0	0	0	0	0	0	0	7850	116	4	5		5	INTS4	11	77639373	Intron	SNP	A	TCGA-75-6212-01A-11D-1753-08	11978966	77639373	57367143	34	169285											
TMPRSS13	84000	broad.mit.edu	37	chr11	117784512	117784512	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcgaaacccagctgctgGcaggtcttctctgagtagga	11	12	3	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117784512	A	A	117784512	2	1	222	1	0	0	0	0	0	0	0	1	16368	1195	42	4		4	TMPRSS13	11	117784512	Silent	SNP	G	TCGA-75-6212-01A-11D-1753-08	40145139	117784512	17222004	35	169286											
UNC119B	84747	broad.mit.edu	37	chr12	121154885	121154885	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacagcactctagattctgaGggctacaaggaacaaacctt	8	10	2	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121154885	C	C	121154885	1	2	222	0	1	0	0	0	0	0	0	0	17109	1015	35	4		4	UNC119B	12	121154885	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08		121154885	12697010	36	169287											
DACH1	1602	broad.mit.edu	37	chr13	72249270	72249270	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtaactggctacaaaagcCgctcgcaagagtgcgccctc	10	13	0	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72249270	T	T	72249270	1	4	222	0	1	0	0	0	0	0	0	0	4253	667	23	4		4	DACH1	13	72249270	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08		72249270	42920608	37	169288											
MYH6	4624	broad.mit.edu	37	chr14	23858561	23858561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagatgaattgccccagGgctgccatcaagcctgccca	10	14	1	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23858561	T	T	23858561	1	4	222	0	1	0	0	0	0	0	0	0	10132	1247	43	2		2	MYH6	14	23858561	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08		23858561	83490979	38	169289											
TRIM9	114088	broad.mit.edu	37	chr14	51448483	51448483	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cactcctgatcagaagccaaCgtgaagaaggcttggtttgg	12	9	1	4			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51448483	T	T	51448483	1	4	222	0	1	0	0	0	0	0	0	0	16674	551	19	4		4	TRIM9	14	51448483	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08	27589922	51448483	55901057	39	169290											
DLGAP5	9787	broad.mit.edu	37	chr14	55643694	55643695	+	Intron	INS	-	A	A													gacagagcgaactccgtctgINSaaaaaaaaaaaaaaaaaaaa					rs34109336		TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55643695	A	A	55643694	6	5	222	0	1	1	1	0	0	0	0	0	4603	1305	45	0		0	DLGAP5	14	55643694	Intron	INS	-	TCGA-75-6212-01A-11D-1753-08	4195211	55643694	51705846	40	169291											
GPHB5	122876	broad.mit.edu	37	chr14	63784452	63784452	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaaagtaaactccctcaCggcacagcccacaaaggtgc	9	14	1	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63784452	T	T	63784452	3	4	222	1	0	0	0	0	1	0	0	0	6674	536	19	4	171	4	GPHB5	14	63784452	Missense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08	8140758	63784452	43565088	41	169292											
SPTB	6710	broad.mit.edu	37	chr14	65268073	65268073	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcgtgctccaggttgtgCcgggcattggagtccttcag	14	10	1	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65268073	T	T	65268073	2	4	222	1	0	0	0	0	0	0	0	1	15236	726	26	4		4	SPTB	14	65268073	Silent	SNP	C	TCGA-75-6212-01A-11D-1753-08	1483621	65268073	42081467	42	169293											
MAX	4149	broad.mit.edu	37	chr14	65544746	65544748	+	In_Frame_Del	DEL	CCG	-	-													gctttgtctaggatttgggcCcgggatgcctgtggcaatat							TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	65544748	-	-	65544746	7	5	222	1	0	1	0	1	0	0	0	0	9431	610	22	0	526	0	MAX	14	65544746	In_Frame_Del	DEL	CCG	TCGA-75-6212-01A-11D-1753-08	276673	65544746	41804794	43	169294											
DICER1	23405	broad.mit.edu	37	chr14	95593179	95593179	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaaaaaaaaaagggaaTagatactaaaaaaaaaaaaa	4	2	0	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95593179	A	A	95593179	1	1	222	0	1	0	0	0	0	0	0	0	4561	1421	49	5		5	DICER1	14	95593179	Intron	SNP	T	TCGA-75-6212-01A-11D-1753-08	30048433	95593179	11756361	44	169295											
C15orf42	90381	broad.mit.edu	37	chr15	90167027	90167027	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttaaaagactcctcctcAcccggccatgactcaccatt	4	17	2	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90167027	C	C	90167027	2	2	222	1	0	0	0	0	0	0	0	1	1809	146	6	5		5	C15orf42	15	90167027	Silent	SNP	A	TCGA-75-6212-01A-11D-1753-08		90167027	12364365	45	169296											
MYH11	4629	broad.mit.edu	37	chr16	15835751	15835751	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcagtggcttcacctGcacacacacggttagcccat	9	15	1	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15835751	A	A	15835751	1	1	222	0	1	0	0	0	0	0	0	0	10125	1334	46	4		4	MYH11	16	15835751	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08		15835751	74519002	46	169297											
BRD7	29117	broad.mit.edu	37	chr16	50357392	50357392	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgtctttcagggccacAgagttcagctgtcatacttg	12	10	4	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50357392	C	C	50357392	1	2	222	0	1	0	0	0	0	0	0	0	1514	203	7	5		5	BRD7	16	50357392	Intron	SNP	A	TCGA-75-6212-01A-11D-1753-08	34521641	50357392	39997361	47	169298											
NKD1	85407	broad.mit.edu	37	chr16	50667219	50667219	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	accgaaagccccaaggcgtgGacccggcctccttccacttc	9	18	0	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50667219	A	A	50667219	3	1	222	1	0	0	0	0	1	0	0	0	10536	1174	41	4	978	4	NKD1	16	50667219	Missense_Mutation	SNP	G	TCGA-75-6212-01A-11D-1753-08	309827	50667219	39687534	48	169299											
ZNF19	7567	broad.mit.edu	37	chr16	71513005	71513005	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggacttgagggaaagtccTgtgagggataggtaatgaga	17	3	0	3			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71513005	A	A	71513005	1	1	222	0	1	0	0	0	0	0	0	0	17881	1595	55	5		5	ZNF19	16	71513005	Intron	SNP	T	TCGA-75-6212-01A-11D-1753-08	20845786	71513005	18841748	49	169300											
CNTD1	124817	broad.mit.edu	37	chr17	40950731	40950731	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccttcgcggtgccgccgcGcgggcctcgctgggaacagt	15	16	0	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40950731	C	C	40950731	1	2	222	0	1	0	0	0	0	0	0	0	3667	1102	38	4		4	CNTD1	17	40950731	5'Flank	SNP	G	TCGA-75-6212-01A-11D-1753-08		40950731	40244479	50	169301											
FTSJ3	117246	broad.mit.edu	37	chr17	61903386	61903386	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtagatgtttccgtataaAgggggaaggaagagagagac	15	3	0	3			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61903386	C	C	61903386	1	2	222	0	1	0	0	0	0	0	0	0	6149	87	3	5		5	FTSJ3	17	61903386	Intron	SNP	A	TCGA-75-6212-01A-11D-1753-08	20952655	61903386	19291824	51	169302											
EMR1	2015	broad.mit.edu	37	chr19	6919679	6919679	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	caagctgaagatgaattctcGagtcgttgggggcataatga	13	6	1	4			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6919679	A	A	6919679	3	1	222	1	0	0	0	0	1	0	0	0	5146	1058	37	4	1591	4	EMR1	19	6919679	Missense_Mutation	SNP	G	TCGA-75-6212-01A-11D-1753-08		6919679	52209304	52	169303											
CYP4F8	11283	broad.mit.edu	37	chr19	15729054	15729054	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctcttgtagtactcagcCccttccttcctgcttctctc	5	17	3	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15729054	T	T	15729054	1	4	222	0	1	0	0	0	0	0	0	0	4224	638	22	4		4	CYP4F8	19	15729054	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08	8809375	15729054	43399929	53	169304											
ZNF420	147923	broad.mit.edu	37	chr19	37619247	37619247	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccctatgaatgtaaagaaTgtggaaaaacctttagtcgt	8	6	0	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37619247	C	C	37619247	3	2	222	1	0	0	0	0	1	0	0	0	18024	1464	51	5	1364	5	ZNF420	19	37619247	Missense_Mutation	SNP	T	TCGA-75-6212-01A-11D-1753-08	21890193	37619247	21509736	54	169305											
PSG4	5672	broad.mit.edu	37	chr19	43698397	43698397	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttgtgcccatgggacaCaggctgggaataaaaatgtt	12	7	0	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43698397	A	A	43698397	1	1	222	0	1	0	0	0	0	0	0	0	12763	493	17	3		3	PSG4	19	43698397	Intron	SNP	C	TCGA-75-6212-01A-11D-1753-08	6079150	43698397	15430586	55	169306											
C19orf75	284369	broad.mit.edu	37	chr19	51767377	51767377	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagaagcagcactggagGtgtgtttggaagccaagact	16	6	0	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51767377	T	T	51767377	1	4	222	0	1	0	0	0	0	0	0	0	1969	1276	44	3		3	C19orf75	19	51767377	Intron	SNP	G	TCGA-75-6212-01A-11D-1753-08	8068980	51767377	7361606	56	169307											
SSTR4	6754	broad.mit.edu	37	chr20	23016703	23016703	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccggctcgcggcggccagGccgtggcctgcaacctgcag	16	16	0	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23016703	A	A	23016703	3	1	222	1	0	0	0	0	1	0	0	0	15318	1203	42	4	585	4	SSTR4	20	23016703	Missense_Mutation	SNP	G	TCGA-75-6212-01A-11D-1753-08		23016703	40008817	57	169308											
GCNT7	140687	broad.mit.edu	37	chr20	55091955	55091963	+	Intron	DEL	TGAGCACAG	-	-													acgctgaagtggagtgaatcTgagcacagcctccaacattc							TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55091963	-	-	55091955	6	5	222	0	1	1	0	1	0	0	0	0	6366	1595	55	0		0	GCNT7	20	55091955	Intron	DEL	TGAGCACAG	TCGA-75-6212-01A-11D-1753-08	32075252	55091955	7933565	58	169309											
TPTE	7179	broad.mit.edu	37	chr21	10970238	10970238	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attagcaatgaggatttataTggcgacaaccaaaatcttag	8	6	1	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10970238	A	A	10970238	1	1	222	0	1	0	0	0	0	0	0	0	16554	1479	51	5		5	TPTE	21	10970238	Intron	SNP	T	TCGA-75-6212-01A-11D-1753-08		10970238	37159657	59	169310											
MRPL39	54148	broad.mit.edu	37	chr21	26965143	26965143	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttaagtgaacaggtaaaGacacgccctggaatcttcgt	9	10	2	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26965143	A	A	26965143	3	1	222	1	0	0	0	0	1	0	0	0	9896	942	33	4	219	4	MRPL39	21	26965143	Missense_Mutation	SNP	G	TCGA-75-6212-01A-11D-1753-08	15994905	26965143	21164752	60	169311											
CARD10	29775	broad.mit.edu	37	chr22	37888520	37888520	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagccttgggggctccaggCgctgaggatgggcacagttc	17	10	0	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37888520	A	A	37888520	2	1	222	1	0	0	0	0	0	0	0	1	2670	755	27	3		3	CARD10	22	37888520	Silent	SNP	C	TCGA-75-6212-01A-11D-1753-08		37888520	13416046	61	169312											
PHF21B	112885	broad.mit.edu	37	chr22	45309828	45309828	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcgtctgcacttgaggCtgaatgatgatgacctggaa	14	8	1	5			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45309828	T	T	45309828	2	4	222	1	0	0	0	0	0	0	0	1	11929	796	28	4		4	PHF21B	22	45309828	Silent	SNP	C	TCGA-75-6212-01A-11D-1753-08	7421308	45309828	5994738	62	169313											
TBL1X	6907	broad.mit.edu	37	chrX	9661224	9661224	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggctacgggttcatatgaCggttttgcaagaatatggac	12	6	1	2	rs142039049		TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9661224	T	T	9661224	2	4	222	1	0	0	0	0	0	0	0	1	15761	535	19	4		4	TBL1X	23	9661224	Silent	SNP	C	TCGA-75-6212-01A-11D-1753-08		9661224	145609336	63	169314											
NHS	4810	broad.mit.edu	37	chrX	17394368	17394368	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catccagctcacccaccgccGcgtctgggcgctgcagggca	12	18	2	0			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17394368	A	A	17394368	3	1	222	1	0	0	0	0	1	0	0	0	10506	1087	38	4	490	4	NHS	23	17394368	Missense_Mutation	SNP	G	TCGA-75-6212-01A-11D-1753-08	7733144	17394368	137876192	64	169315											
CHM	1121	broad.mit.edu	37	chrX	85219008	85219008	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagatgtcacaagagcatGatttttctgcagtgcaccag	10	9	2	3			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85219008	A	A	85219008	3	1	222	1	0	0	0	0	1	0	0	0	3381	1290	45	4	1641	4	CHM	23	85219008	Missense_Mutation	SNP	G	TCGA-75-6212-01A-11D-1753-08	67824640	85219008	70051552	65	169316											
GPC4	2239	broad.mit.edu	37	chrX	132458609	132458609	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaggaaaaacgagAgttttcagtgtttaaataac	7	3	1	1			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132458609	C	C	132458609	1	2	222	0	1	0	0	0	0	0	0	0	6665	319	11	5		5	GPC4	23	132458609	Intron	SNP	A	TCGA-75-6212-01A-11D-1753-08	47239601	132458609	22811951	66	169317											
L1CAM	3897	broad.mit.edu	37	chrX	153132164	153132164	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccttgccctggctgttgaCggcctggactttgatctcat	10	13	1	2			TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153132164	T	T	153132164	3	4	222	1	0	0	0	0	1	0	0	0	8660	536	19	4	1446	4	L1CAM	23	153132164	Missense_Mutation	SNP	C	TCGA-75-6212-01A-11D-1753-08	20673555	153132164	2138396	67	169318											
NADK	65220	broad.mit.edu	37	chr1	1688055	1688055	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgatcatgttctcctggaagCaaagtgccaacctgctcatt	8	12	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1688055	G	G	1688055	1	3	223	0	1	0	0	0	0	0	0	0	10231	725	25	4		4	NADK	1	1688055	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08		1688055	247562566	1	169319											
NPHP4	261734	broad.mit.edu	37	chr1	6012905	6012905	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcgtcgcctgaaacaGtgagggtgcgaaaagggtca	17	7	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6012905	T	T	6012905	1	4	223	0	1	0	0	0	0	0	0	0	10676	1044	36	3		3	NPHP4	1	6012905	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	4324850	6012905	243237716	2	169320											
CAMTA1	23261	broad.mit.edu	37	chr1	7737753	7737753	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaaagcccgggctctgccCacgctcccttcctcccagca	7	20	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7737753	A	A	7737753	2	1	223	1	0	0	0	0	0	0	0	1	2639	581	21	2		2	CAMTA1	1	7737753	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	1724848	7737753	241512868	3	169321											
NBPF1	55672	broad.mit.edu	37	chr1	16935131	16935131	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggacagtgggagtcagcGgcatccccagtgtggaggcc	16	12	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16935131	A	A	16935131	1	1	223	0	1	0	0	0	0	0	0	0	10286	1131	39	4		4	NBPF1	1	16935131	5'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	9197378	16935131	232315490	4	169322											
CROCC	9696	broad.mit.edu	37	chr1	17298965	17298965	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgctggcatctggagaacAcccctgtgcctgggacaggg	14	13	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	17298965	C	C	17298965	1	2	223	0	1	0	0	0	0	0	0	0	3925	174	6	5		5	CROCC	1	17298965	3'UTR	SNP	A	TCGA-80-5611-01A-01D-1625-08	363834	17298965	231951656	5	169323											
CNKSR1	10256	broad.mit.edu	37	chr1	26510616	26510616	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccatcactgtctctgGccccactgtctcccaggtaa	9	16	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26510616	A	A	26510616	3	1	223	1	0	0	0	0	1	0	0	0	3638	1203	42	4	948	4	CNKSR1	1	26510616	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	9211651	26510616	222740005	6	169324											
FGR	2268	broad.mit.edu	37	chr1	27939698	27939698	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccttccccgtgaccatccCccaccccagccctacccctg	5	25	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27939698	T	T	27939698	1	4	223	0	1	0	0	0	0	0	0	0	5931	638	22	4		4	FGR	1	27939698	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1429082	27939698	221310923	7	169325											
PPP1R8	5511	broad.mit.edu	37	chr1	28167669	28167669	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	attgccatcggctgtgaaagGagatgagaagatgggtggag	17	4	0	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28167669	A	A	28167669	3	1	223	1	0	0	0	0	1	0	0	0	12478	1174	41	4	430	4	PPP1R8	1	28167669	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	227971	28167669	221082952	8	169326											
PHACTR4	65979	broad.mit.edu	37	chr1	28815703	28815703	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgactgagtcaaagaccaacAccagaagaactagaacaacg	8	11	1	5			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28815703	G	G	28815703	2	3	223	1	0	0	0	0	0	0	0	1	11907	146	6	5		5	PHACTR4	1	28815703	Silent	SNP	A	TCGA-80-5611-01A-01D-1625-08	648034	28815703	220434918	9	169327											
PHC2	1912	broad.mit.edu	37	chr1	33832751	33832751	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgggcagccacagcaggAaccgtccggctgagcccagc	16	14	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33832751	T	T	33832751	2	4	223	1	0	0	0	0	0	0	0	1	11912	233	9	5		5	PHC2	1	33832751	Silent	SNP	A	TCGA-80-5611-01A-01D-1625-08	5017048	33832751	215417870	10	169328											
DNAJC6	9829	broad.mit.edu	37	chr1	65855004	65855004	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcaggtgacactggatgTagaactacagccccatgaca	9	10	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65855004	C	C	65855004	3	2	223	1	0	0	0	0	1	0	0	0	4693	1638	57	5	1126	5	DNAJC6	1	65855004	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	32022253	65855004	183395617	11	169329											
LRRC7	57554	broad.mit.edu	37	chr1	70502175	70502175	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactcactgtctgaataacaGtgtttcctcaggcacttact	6	11	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70502175	A	A	70502175	3	1	223	1	0	0	0	0	1	0	0	0	9107	1029	36	4	2112	4	LRRC7	1	70502175	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4647171	70502175	178748446	12	169330											
FPGT	8790	broad.mit.edu	37	chr1	74671569	74671569	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtaacattccagagataGgtattttttgtaggctgttt	10	4	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74671569	A	A	74671569	1	1	223	0	1	0	0	0	0	0	0	0	6097	1015	35	4		4	FPGT	1	74671569	3'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	4169394	74671569	174579052	13	169331											
CLCA4	22802	broad.mit.edu	37	chr1	87025842	87025842	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaagagtctttctaactgAatattatcttttttattttt	3	4	3	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87025842	T	T	87025842	1	4	223	0	1	0	0	0	0	0	0	0	3490	261	9	5		5	CLCA4	1	87025842	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	12354273	87025842	162224779	14	169332											
HFM1	164045	broad.mit.edu	37	chr1	91851286	91851286	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatagttccttgatttcccTttgttcatttctgtttgtac	5	9	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	91851286	C	C	91851286	2	2	223	1	0	0	0	0	0	0	0	1	7150	1606	56	5		5	HFM1	1	91851286	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08	4825444	91851286	157399335	15	169333											
DPYD	1806	broad.mit.edu	37	chr1	97771617	97771617	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgctcaactggaaactttTaaaattgagacaaaaaatat	6	5	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97771617	C	C	97771617	1	2	223	0	1	0	0	0	0	0	0	0	4785	1769	61	5		5	DPYD	1	97771617	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	5920331	97771617	151479004	16	169334											
CDC14A	8556	broad.mit.edu	37	chr1	100858954	100858954	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattgtttacacattcttgCcatgcagtaatgccattttt	6	8	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100858954	T	T	100858954	1	4	223	0	1	0	0	0	0	0	0	0	3086	754	26	4		4	CDC14A	1	100858954	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	3087337	100858954	148391667	17	169335											
COL11A1	1301	broad.mit.edu	37	chr1	103387223	103387223	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatctaaaagaagtttaagCttgtaaaaactatagttagt	6	3	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103387223	A	A	103387223	1	1	223	0	1	0	0	0	0	0	0	0	3699	812	28	3		3	COL11A1	1	103387223	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	2528269	103387223	145863398	18	169336											
C1orf194	127003	broad.mit.edu	37	chr1	109649765	109649765	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctacagaagtcagtccccccCaaggttagctcagccacctg	8	16	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109649765	G	G	109649765	1	3	223	0	1	0	0	0	0	0	0	0	2045	609	21	4		4	C1orf194	1	109649765	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	6262542	109649765	139600856	19	169337											
AMPD2	271	broad.mit.edu	37	chr1	110168726	110168727	+	Intron	DNP	GG	AA	AA													ctagtgcggtgctgggacctGggagcaagggccgtccctcg							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	110168727	AA	AA	110168726	1	1	223	0	1	0	0	0	0	0	0	0	586	1363	47	4		4	AMPD2	1	110168726	Intron	DNP	GG	TCGA-80-5611-01A-01D-1625-08	518961	110168726	139081895	20	169338											
DENND2D	79961	broad.mit.edu	37	chr1	111742456	111742456	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccatttagtataatctcAttgatccattcctggagtgg	8	9	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111742456	G	G	111742456	1	3	223	0	1	0	0	0	0	0	0	0	4471	232	8	5		5	DENND2D	1	111742456	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	1573730	111742456	137508165	21	169339											
PTPN22	26191	broad.mit.edu	37	chr1	114400530	114400531	+	Intron	INS	-	A	A													tttttttttaaccaaaaaatINSaaatcctggtgacttataaa							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114400531	A	A	114400530	6	5	223	0	1	1	1	0	0	0	0	0	12895	1421	49	0		0	PTPN22	1	114400530	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	2658074	114400530	134850091	22	169340											
HAO2	51179	broad.mit.edu	37	chr1	119929411	119929411	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgtccagggtatcattgTttccaaccatggtgggaggc	12	9	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119929411	C	C	119929411	3	2	223	1	0	0	0	0	1	0	0	0	7018	1725	60	5	742	5	HAO2	1	119929411	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	5528881	119929411	129321210	23	169341											
PDE4DIP	9659	broad.mit.edu	37	chr1	145075778	145075778	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccccggaccggtaaggcgTgtagtgagcccggcgggacg	18	12	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145075778	A	A	145075778	3	1	223	1	0	0	0	0	1	0	0	0	11737	1696	59	5	8727	5	PDE4DIP	1	145075778	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	25146367	145075778	104174843	24	169342											
LOC200030	200030	broad.mit.edu	37	chr1	148009534	148009534	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctggaaaagtgggaaaaAgtaaagaataagccaggggg	15	4	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148009534	G	G	148009534	1	3	223	0	1	0	0	0	0	0	0	0	8950	87	3	5		5	LOC200030	1	148009534	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	2933756	148009534	101241087	25	169343											
LOC200030	200030	broad.mit.edu	37	chr1	148011136	148011137	+	Intron	INS	-	T	T													gctagatttcatggctaacgINStaaggaagagtttgaaaata					rs148901736	by1000genomes	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148011137	T	T	148011136	6	5	223	0	1	1	1	0	0	0	0	0	8950	1160	40	0		0	LOC200030	1	148011136	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	1602	148011136	101239485	26	169344											
PBXIP1	57326	broad.mit.edu	37	chr1	154919276	154919276	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctctgaagctcttccttttGggcctagaatatggtttggg	12	8	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154919276	C	C	154919276	3	2	223	1	0	0	0	0	1	0	0	0	11590	1357	47	4	1329	4	PBXIP1	1	154919276	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	6908140	154919276	94331345	27	169345											
DCST1	149095	broad.mit.edu	37	chr1	155011790	155011790	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggtggtggttccagaagGgggtgttgcaggtgggtgct	21	4	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155011790	A	A	155011790	1	1	223	0	1	0	0	0	0	0	0	0	4335	1247	43	4		4	DCST1	1	155011790	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	92514	155011790	94238831	28	169346											
CLK2	1196	broad.mit.edu	37	chr1	155239366	155239366	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggctgcggtaactgctgttCtcccgctgatattcatagga	11	10	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155239366	G	G	155239366	3	3	223	1	0	0	0	0	1	0	0	0	3569	912	32	4	1228	4	CLK2	1	155239366	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	227576	155239366	94011255	29	169347											
HCN3	57657	broad.mit.edu	37	chr1	155255611	155255611	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagttctcaccaagctgCgctttgaggtcttccagccg	10	14	2	1	rs146290600	byFrequency	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155255611	T	T	155255611	3	4	223	1	0	0	0	0	1	0	0	0	7064	768	27	4	1355	4	HCN3	1	155255611	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	16245	155255611	93995010	30	169348											
SLC25A44	9673	broad.mit.edu	37	chr1	156177826	156177826	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taagactgaccacttccctcAccctcctcctggagaagcca	6	17	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156177826	C	C	156177826	1	2	223	0	1	0	0	0	0	0	0	0	14623	174	6	5		5	SLC25A44	1	156177826	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	922215	156177826	93072795	31	169349											
CCT3	7203	broad.mit.edu	37	chr1	156290753	156290753	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccaccgactgatggctttGgtagtaatagagctgttgat	12	7	0	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156290753	C	C	156290753	2	2	223	1	0	0	0	0	0	0	0	1	2984	1335	47	4		4	CCT3	1	156290753	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	112927	156290753	92959868	32	169350											
NTRK1	4914	broad.mit.edu	37	chr1	156844018	156844018	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggaaaagggtcacatGcatcttcttccttgaggccc	10	12	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156844018	T	T	156844018	1	4	223	0	1	0	0	0	0	0	0	0	10801	1334	46	3		3	NTRK1	1	156844018	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	553265	156844018	92406603	33	169351											
FCRL1	115350	broad.mit.edu	37	chr1	157766953	157766953	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagacaagtgctgtgacattCcacttatatttaaagtcctt	6	8	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157766953	A	A	157766953	1	1	223	0	1	0	0	0	0	0	0	0	5851	870	30	3		3	FCRL1	1	157766953	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	922935	157766953	91483668	34	169352											
FCRL1	115350	broad.mit.edu	37	chr1	157772151	157772151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactggctggctgaacgaaGggtagtggaacttacttctg	14	7	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157772151	T	T	157772151	1	4	223	0	1	0	0	0	0	0	0	0	5851	1015	35	2		2	FCRL1	1	157772151	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	5198	157772151	91478470	35	169353											
SPTA1	6708	broad.mit.edu	37	chr1	158624414	158624414	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcaccttattgatggaaCtgagcagcgttaagacatca	9	8	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158624414	A	A	158624414	3	1	223	1	0	0	0	0	1	0	0	0	15234	565	20	3	4364	3	SPTA1	1	158624414	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	852263	158624414	90626207	36	169354											
SPTA1	6708	broad.mit.edu	37	chr1	158627368	158627368	+	Frame_Shift_Del	DEL	G	-	-													caggtcagccaggtactgctGgaactggacattggcttcaa							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158627368	-	-	158627368	7	5	223	1	0	1	0	1	0	0	0	0	15234	1357	47	0	4691	0	SPTA1	1	158627368	Frame_Shift_Del	DEL	G	TCGA-80-5611-01A-01D-1625-08	2954	158627368	90623253	37	169355											
PYHIN1	149628	broad.mit.edu	37	chr1	158908958	158908958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccttcctgctctgcaggagCcagcacgtccacagccatgg	11	16	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158908958	A	A	158908958	3	1	223	1	0	0	0	0	1	0	0	0	12973	739	26	3	510	3	PYHIN1	1	158908958	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	281590	158908958	90341663	38	169356											
AIM2	9447	broad.mit.edu	37	chr1	159036171	159036171	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtcaaaaaggtactattgAaaggaccttacttcacctac	7	9	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159036171	G	G	159036171	1	3	223	0	1	0	0	0	0	0	0	0	432	261	9	5		5	AIM2	1	159036171	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	127213	159036171	90214450	39	169357											
RGS5	8490	broad.mit.edu	37	chr1	163122243	163122243	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgactcacaaataggaataGcctttggctcccaacgggag	10	11	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163122243	C	C	163122243	1	2	223	0	1	0	0	0	0	0	0	0	13417	986	34	4		4	RGS5	1	163122243	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	4086072	163122243	86128378	40	169358											
BAT2L2	23215	broad.mit.edu	37	chr1	171509216	171509216	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatcagagaatcaagtgagGcacaagtacaaaagttttta	8	5	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171509216	A	A	171509216	3	1	223	1	0	0	0	0	1	0	0	0	1326	1203	42	4	2663	4	BAT2L2	1	171509216	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	8386973	171509216	77741405	41	169359											
TNN	63923	broad.mit.edu	37	chr1	175113397	175113397	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttgagagagcggtgactAcctgtgacatgactggctgc	14	8	0	5			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175113397	G	G	175113397	1	3	223	0	1	0	0	0	0	0	0	0	16446	406	14	5		5	TNN	1	175113397	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	3604181	175113397	74137224	42	169360											
PAPPA2	60676	broad.mit.edu	37	chr1	176563604	176563604	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttcttctccctttctcCattcccctttgtatctggta	5	14	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176563604	A	A	176563604	1	1	223	0	1	0	0	0	0	0	0	0	11527	609	21	2		2	PAPPA2	1	176563604	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1450207	176563604	72687017	43	169361											
ASTN1	460	broad.mit.edu	37	chr1	176903371	176903371	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagaacaggactcctcaaagCcgtagatagcttcctggatg	10	10	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176903371	G	G	176903371	3	3	223	1	0	0	0	0	1	0	0	0	1068	739	26	4	1332	4	ASTN1	1	176903371	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	339767	176903371	72347250	44	169362											
FAM5B	57795	broad.mit.edu	37	chr1	177250450	177250450	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatatactcaaggttcccAggactctgcactcttgcagc	7	15	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177250450	T	T	177250450	3	4	223	1	0	0	0	0	1	0	0	0	5644	188	7	5	2164	5	FAM5B	1	177250450	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	347079	177250450	72000171	45	169363											
LAMC1	3915	broad.mit.edu	37	chr1	183102584	183102584	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggatctggaaaaacaaGctgcccgagtacatgaggag	12	9	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183102584	A	A	183102584	3	1	223	1	0	0	0	0	1	0	0	0	8686	971	34	4	3834	4	LAMC1	1	183102584	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	5852134	183102584	66148037	46	169364											
HMCN1	83872	broad.mit.edu	37	chr1	185959619	185959619	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacacatgaaaacataatcaAcctcttgggacagatggcca	7	10	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185959619	T	T	185959619	1	4	223	0	1	0	0	0	0	0	0	0	7287	58	2	5		5	HMCN1	1	185959619	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	2857035	185959619	63291002	47	169365											
IRF6	3664	broad.mit.edu	37	chr1	209961969	209961969	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaaacatctcgtagatcatCcgagccactactggaatgac	8	11	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209961969	A	A	209961969	2	1	223	1	0	0	0	0	0	0	0	1	7904	842	30	3		3	IRF6	1	209961969	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	24002350	209961969	39288652	48	169366											
OBSCN	84033	broad.mit.edu	37	chr1	228469981	228469981	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgggcctgtccccaggagtCcaggagctgggcccccctgg	15	16	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228469981	A	A	228469981	1	1	223	0	1	0	0	0	0	0	0	0	10907	870	30	3		3	OBSCN	1	228469981	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	18508012	228469981	20780640	49	169367											
SIPA1L2	57568	broad.mit.edu	37	chr1	232534998	232534998	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgctgcacttctgcttggaGaacggccttgtcttgttttt	11	9	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	232534998	T	T	232534998	3	4	223	1	0	0	0	0	1	0	0	0	14443	942	33	3	128	3	SIPA1L2	1	232534998	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4065017	232534998	16715623	50	169368											
LYST	1130	broad.mit.edu	37	chr1	235969480	235969480	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttatggcatactcggaaacCaccaagcctataaaactgtt	6	11	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235969480	T	T	235969480	3	4	223	1	0	0	0	0	1	0	0	0	9216	594	21	4	8641	4	LYST	1	235969480	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	3434482	235969480	13281141	51	169369											
OR2L13	284521	broad.mit.edu	37	chr1	248247110	248247110	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcgtggttagtggacctgTgggatttgggtctcatatag	15	5	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248247110	C	C	248247110	1	2	223	0	1	0	0	0	0	0	0	0	11100	1711	59	5		5	OR2L13	1	248247110	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	12277630	248247110	1003511	52	169370											
RNF144A	9781	broad.mit.edu	37	chr2	7170260	7170260	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctctgcccctcacaggatGatttccttctgatacactac	6	14	3	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7170260	A	A	7170260	3	1	223	1	0	0	0	0	1	0	0	0	13556	1290	45	4	683	4	RNF144A	2	7170260	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08		7170260	236029113	53	169371											
ROCK2	9475	broad.mit.edu	37	chr2	11342265	11342265	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctctgtgaggacaatgaatCaaaggtttaaataacttaca	7	6	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11342265	T	T	11342265	1	4	223	0	1	0	0	0	0	0	0	0	13629	841	29	4		4	ROCK2	2	11342265	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	4172005	11342265	231857108	54	169372											
LPIN1	23175	broad.mit.edu	37	chr2	11913634	11913634	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacagatctgggtgtttaaAgagatcatgttaattacaaa	9	4	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11913634	G	G	11913634	1	3	223	0	1	0	0	0	0	0	0	0	9005	87	3	5		5	LPIN1	2	11913634	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	571369	11913634	231285739	55	169373											
DDX1	1653	broad.mit.edu	37	chr2	15736890	15736890	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtggcaaaactggtgtAagtaataaattatatttact	9	3	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15736890	G	G	15736890	1	3	223	0	1	0	0	0	0	0	0	0	4374	377	13	5		5	DDX1	2	15736890	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	3823256	15736890	227462483	56	169374											
DDX1	1653	broad.mit.edu	37	chr2	15739902	15739902	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactttaaaaaataatacatGagaacaccaagtaaataaga	4	5	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15739902	T	T	15739902	1	4	223	0	1	0	0	0	0	0	0	0	4374	1305	45	3		3	DDX1	2	15739902	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	3012	15739902	227459471	57	169375											
ADCY3	109	broad.mit.edu	37	chr2	25044490	25044490	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccaggtgctgccagcgcTctctctcggacttgtcttcc	10	16	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25044490	A	A	25044490	3	1	223	1	0	0	0	0	1	0	0	0	295	1551	54	5	423	5	ADCY3	2	25044490	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	9304588	25044490	218154883	58	169376											
THADA	63892	broad.mit.edu	37	chr2	43779441	43779441	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaattttcagcctgagaTacttcttcctcaagattttc	6	9	3	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43779441	C	C	43779441	2	2	223	1	0	0	0	0	0	0	0	1	15963	1393	49	5		5	THADA	2	43779441	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08	18734951	43779441	199419932	59	169377											
PREPL	9581	broad.mit.edu	37	chr2	44586775	44586775	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaagttatagtgattcaaaTgctgtttctgcatgcatttt	8	6	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44586775	A	A	44586775	3	1	223	1	0	0	0	0	1	0	0	0	12581	1464	51	5	2159	5	PREPL	2	44586775	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	807334	44586775	198612598	60	169378											
NRXN1	9378	broad.mit.edu	37	chr2	50318349	50318349	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gactctaaagtccaataaatAgttgatggtttctcagaaaa	7	6	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50318349	T	T	50318349	1	4	223	0	1	0	0	0	0	0	0	0	10760	435	15	5		5	NRXN1	2	50318349	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	5731574	50318349	192881024	61	169379											
EHBP1	23301	broad.mit.edu	37	chr2	63176253	63176253	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctgatccagatgctgatAgaaccactttaaatcatgca	7	9	2	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	63176253	G	G	63176253	3	3	223	1	0	0	0	0	1	0	0	0	5015	412	15	5	2427	5	EHBP1	2	63176253	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	12857904	63176253	180023120	62	169380											
ANTXR1	84168	broad.mit.edu	37	chr2	69300292	69300292	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacggggcttctcctttctaAaatgggccacactctctcta	7	13	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69300292	G	G	69300292	1	3	223	0	1	0	0	0	0	0	0	0	711	29	1	5		5	ANTXR1	2	69300292	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	6124039	69300292	173899081	63	169381											
AAK1	22848	broad.mit.edu	37	chr2	69869993	69869993	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagattttaatttacggcgcAttgagccccaccgtaccttc	7	12	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69869993	G	G	69869993	1	3	223	0	1	0	0	0	0	0	0	0	16	232	8	5		5	AAK1	2	69869993	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	569701	69869993	173329380	64	169382											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71377048	71377048	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagcattcttttctaaatTacaagatcaagtaaaaatgc	4	7	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71377048	C	C	71377048	3	2	223	1	0	0	0	0	1	0	0	0	9819	1764	61	5	1991	5	MPHOSPH10	2	71377048	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	1507055	71377048	171822325	65	169383											
LRRTM4	80059	broad.mit.edu	37	chr2	77745564	77745564	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tactcctgtaaaggggaattCatttgtctttcagactctct	7	9	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77745564	T	T	77745564	3	4	223	1	0	0	0	0	1	0	0	0	9129	826	29	4	355	4	LRRTM4	2	77745564	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	6368516	77745564	165453809	66	169384											
SMYD1	150572	broad.mit.edu	37	chr2	88407960	88407960	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggctgaccaactggcatGctggtaacattgaggtgggg	16	8	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88407960	A	A	88407960	3	1	223	1	0	0	0	0	1	0	0	0	14935	1319	46	4	1250	4	SMYD1	2	88407960	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	10662396	88407960	154791413	67	169385											
KCNIP3	30818	broad.mit.edu	37	chr2	96048258	96048258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccagccctgcctagggaGgggagcctggcagaggaagg	19	11	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96048258	T	T	96048258	1	4	223	0	1	0	0	0	0	0	0	0	8111	1015	35	2		2	KCNIP3	2	96048258	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	7640298	96048258	147151115	68	169386											
TGFBRAP1	9392	broad.mit.edu	37	chr2	105924597	105924597	+	Frame_Shift_Del	DEL	C	-	-													gctggcccagcaggcactggCctctcctccaacaggaagtg							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	105924597	-	-	105924597	7	5	223	1	0	1	0	1	0	0	0	0	15947	738	26	0	2464	0	TGFBRAP1	2	105924597	Frame_Shift_Del	DEL	C	TCGA-80-5611-01A-01D-1625-08	9876339	105924597	137274776	69	169387											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460008	107460008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaatgtcccctgagtgtgGctgtgccaccctggctgacc	11	16	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107460008	T	T	107460008	3	4	223	1	0	0	0	0	1	0	0	0	15340	1194	42	3	1270	3	ST6GAL2	2	107460008	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	1535411	107460008	135739365	70	169388											
RANBP2	5903	broad.mit.edu	37	chr2	109357154	109357154	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggtaagtcttccacttgTaggagcaattgacatttcac	8	9	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109357154	C	C	109357154	1	2	223	0	1	0	0	0	0	0	0	0	13136	1653	57	5		5	RANBP2	2	109357154	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	1897146	109357154	133842219	71	169389											
MERTK	10461	broad.mit.edu	37	chr2	112776925	112776925	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcctttccccccccggcAgaaactgcttgcaagttttc	7	16	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112776925	G	G	112776925	1	3	223	0	1	0	0	0	0	0	0	0	9572	203	7	5		5	MERTK	2	112776925	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	3419771	112776925	130422448	72	169390											
POTEF	728378	broad.mit.edu	37	chr2	130873059	130873059	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacactatttattatctcTcattgctcgctgtattaatg	5	9	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130873059	C	C	130873059	1	2	223	0	1	0	0	0	0	0	0	0	12361	1566	54	5		5	POTEF	2	130873059	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	18096134	130873059	112326314	73	169391											
POTEE	445582	broad.mit.edu	37	chr2	132010488	132010488	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttattctctgtattttcCagctagaaaattttatggct	5	7	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132010488	T	T	132010488	1	4	223	0	1	0	0	0	0	0	0	0	12360	609	21	4		4	POTEE	2	132010488	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1137429	132010488	111188885	74	169392											
LRP1B	53353	broad.mit.edu	37	chr2	141747008	141747008	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataatcagatcatcagcactAggaaagttcagcttagttca	7	8	5	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	141747008	G	G	141747008	1	3	223	0	1	0	0	0	0	0	0	0	9042	435	15	5		5	LRP1B	2	141747008	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	9736520	141747008	101452365	75	169393											
LRP1B	53353	broad.mit.edu	37	chr2	141812775	141812775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgagtagacagatgtGtgaacagccccctggcattc	12	11	0	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141812775	A	A	141812775	3	1	223	1	0	0	0	0	1	0	0	0	9042	1377	48	4	12665	4	LRP1B	2	141812775	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	65767	141812775	101386598	76	169394											
ZEB2	9839	broad.mit.edu	37	chr2	145156993	145156993	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atggggccaggaaaactttcTttacagaactggcatgaaaa	10	7	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145156993	A	A	145156993	3	1	223	1	0	0	0	0	1	0	0	0	17750	1606	56	5	1895	5	ZEB2	2	145156993	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	3344218	145156993	98042380	77	169395											
RIF1	55183	broad.mit.edu	37	chr2	152300099	152300099	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttctggtccaacttcacCactagctttcagtgactcag	6	13	5	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152300099	T	T	152300099	3	4	223	1	0	0	0	0	1	0	0	0	13468	594	21	4	1928	4	RIF1	2	152300099	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	7143106	152300099	90899274	78	169396											
DPP4	1803	broad.mit.edu	37	chr2	162879202	162879202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagccctagttttaaataGctgcatatcaaatagctgag	8	7	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162879202	T	T	162879202	1	4	223	0	1	0	0	0	0	0	0	0	4769	986	34	3		3	DPP4	2	162879202	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	10579103	162879202	80320171	79	169397											
GALNT3	2591	broad.mit.edu	37	chr2	166615484	166615484	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catatcacattttcaaagctTttattcagattaataaaaac	2	7	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166615484	A	A	166615484	1	1	223	0	1	0	0	0	0	0	0	0	6276	1856	64	5		5	GALNT3	2	166615484	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	3736282	166615484	76583889	80	169398											
SCN1A	6323	broad.mit.edu	37	chr2	166848264	166848264	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtttgtttggttgtggcaGattgagaggcggttcaagcg	17	4	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166848264	T	T	166848264	3	4	223	1	0	0	0	0	1	0	0	0	14027	933	33	3	512	3	SCN1A	2	166848264	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	232780	166848264	76351109	81	169399											
LRP2	4036	broad.mit.edu	37	chr2	170097929	170097929	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtaatttgtgatcccttTtatagtctagactcagagga	8	6	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170097929	C	C	170097929	1	2	223	0	1	0	0	0	0	0	0	0	9043	1856	64	5		5	LRP2	2	170097929	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	3249665	170097929	73101444	82	169400											
TTN	7273	broad.mit.edu	37	chr2	179585221	179585221	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggatatgaagacttgtAtcaaaatgttttgaagtgat	9	2	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179585221	T	T	179585221	3	4	223	1	0	0	0	0	1	0	0	0	16861	446	16	5	81393	5	TTN	2	179585221	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	9487292	179585221	63614152	83	169401											
TTN	7273	broad.mit.edu	37	chr2	179598223	179598223	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacctggatcagttctgctCgctcaatgattttggcaggt	10	10	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179598223	A	A	179598223	3	1	223	1	0	0	0	0	1	0	0	0	16861	884	31	3	88968	3	TTN	2	179598223	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	13002	179598223	63601150	84	169402											
CCDC150	284992	broad.mit.edu	37	chr2	197534559	197534559	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaatttttgtttttagctTctagagatgacctcatttcc	7	7	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197534559	C	C	197534559	3	2	223	1	0	0	0	0	1	0	0	0	2811	1783	62	5	925	5	CCDC150	2	197534559	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	17936336	197534559	45664814	85	169403											
SATB2	23314	broad.mit.edu	37	chr2	200213524	200213524	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatatctggagagacttccAcggaagagttggttggctct	13	7	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	200213524	G	G	200213524	3	3	223	1	0	0	0	0	1	0	0	0	13966	159	6	5	1148	5	SATB2	2	200213524	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	2678965	200213524	42985849	86	169404											
DYTN	391475	broad.mit.edu	37	chr2	207569584	207569584	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tacctgctgtagatctgttaGtagttttctcaaaacccttc	6	10	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207569584	C	C	207569584	3	2	223	1	0	0	0	0	1	0	0	0	4901	1020	36	4	1302	4	DYTN	2	207569584	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	7356060	207569584	35629789	87	169405											
PIKFYVE	200576	broad.mit.edu	37	chr2	209195472	209195472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatttctttatttgtatGttttttttttttcctgagga	5	3	1	1	rs71412492		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209195472	T	T	209195472	1	4	223	0	1	0	0	0	0	0	0	0	12019	1392	48	3		3	PIKFYVE	2	209195472	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	1625888	209195472	34003901	88	169406											
PIKFYVE	200576	broad.mit.edu	37	chr2	209218638	209218638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggtttttgatttgaaggGctctcttaggaatcggaatg	12	5	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	209218638	T	T	209218638	3	4	223	1	0	0	0	0	1	0	0	0	12019	1203	42	3	6026	3	PIKFYVE	2	209218638	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	23166	209218638	33980735	89	169407											
FN1	2335	broad.mit.edu	37	chr2	216262478	216262478	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggatggtgtagacgtattCtactcctggagtcaagccgg	13	8	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216262478	A	A	216262478	4	1	223	1	0	0	0	0	0	1	0	0	6020	922	32	3	4091	3	FN1	2	216262478	Nonsense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	7043840	216262478	26936895	90	169408											
TTLL4	9654	broad.mit.edu	37	chr2	219604893	219604893	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaatgaagaggaggagggtGagtaggaaaccctttcactt	14	5	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219604893	A	A	219604893	1	1	223	0	1	0	0	0	0	0	0	0	16855	1305	45	4		4	TTLL4	2	219604893	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	3342415	219604893	23594480	91	169409											
ABCB6	10058	broad.mit.edu	37	chr2	220078284	220078284	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ggaaataataatgtgccctgGacaggtgagggccagggctc	15	8	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220078284	C	C	220078284	1	2	223	0	1	0	0	0	0	0	0	0	45	1189	41	4		4	ABCB6	2	220078284	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	473391	220078284	23121089	92	169410											
SERPINE2	5270	broad.mit.edu	37	chr2	224845215	224845215	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagccatggcaaattccaAtttttaaagtgtcagaagac	7	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	224845215	G	G	224845215	1	3	223	0	1	0	0	0	0	0	0	0	14225	116	4	5		5	SERPINE2	2	224845215	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	4766931	224845215	18354158	93	169411											
COL4A3	1285	broad.mit.edu	37	chr2	228159374	228159374	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtaaacctactactctAtagaaggtagctcctagtta	6	9	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	228159374	G	G	228159374	1	3	223	0	1	0	0	0	0	0	0	0	3723	464	16	5		5	COL4A3	2	228159374	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	3314159	228159374	15039999	94	169412											
PID1	55022	broad.mit.edu	37	chr2	229890361	229890361	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttcattcagccatcatcgGattccaattcctgggaaacc	7	12	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229890361	A	A	229890361	3	1	223	1	0	0	0	0	1	0	0	0	11977	1174	41	4	16	4	PID1	2	229890361	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	1730987	229890361	13309012	95	169413											
UGT1A6	54578	broad.mit.edu	37	chr2	234602290	234602290	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aacgagtggccaacttccttGttaatttgttggagccctat	9	9	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	234602290	C	C	234602290	3	2	223	1	0	0	0	0	1	0	0	0	17075	1377	48	4	642	4	UGT1A6	2	234602290	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4711929	234602290	8597083	96	169414											
CNTN6	27255	broad.mit.edu	37	chr3	1367757	1367757	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggtatgttccaggaaaGgatgcatacactgatttatt	9	6	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1367757	A	A	1367757	1	1	223	0	1	0	0	0	0	0	0	0	3677	1015	35	4		4	CNTN6	3	1367757	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08		1367757	196654673	97	169415											
OSBPL10	114884	broad.mit.edu	37	chr3	31917965	31917965	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtatttggcacaagctcgaAgctgagtcacccagaattgt	11	9	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31917965	C	C	31917965	3	2	223	1	0	0	0	0	1	0	0	0	11369	72	3	5	1837	5	OSBPL10	3	31917965	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	30550208	31917965	166104465	98	169416											
GPD1L	23171	broad.mit.edu	37	chr3	32207365	32207367	+	In_Frame_Del	DEL	TGT	-	-													aagcagaccagttcaagagaTgttgtcttgtcttcagagcc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32207367	-	-	32207365	7	5	223	1	0	1	0	1	0	0	0	0	6670	1464	51	0	1049	0	GPD1L	3	32207365	In_Frame_Del	DEL	TGT	TCGA-80-5611-01A-01D-1625-08	289400	32207365	165815065	99	169417											
HIGD1A	25994	broad.mit.edu	37	chr3	42845736	42845736	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaccctaggcctcggctccCgactcctctcatccgcccat	8	20	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42845736	G	G	42845736	1	3	223	0	1	0	0	0	0	0	0	0	7173	667	23	4		4	HIGD1A	3	42845736	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	10638371	42845736	155176694	100	169418											
MON1A	84315	broad.mit.edu	37	chr3	49947983	49947984	+	Frame_Shift_Del	DEL	GC	-	-													aggatggagaagaccaggctGcgcgcacgcgcctgctgcag							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49947984	-	-	49947983	7	5	223	1	0	1	0	1	0	0	0	0	9792	1306	46	0	731	0	MON1A	3	49947983	Frame_Shift_Del	DEL	GC	TCGA-80-5611-01A-01D-1625-08	7102247	49947983	148074447	101	169419											
RRP9	9136	broad.mit.edu	37	chr3	51972152	51972152	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtagagcttggccaagcgcAgcttcttttcctgtgcagtt	12	10	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51972152	T	T	51972152	3	4	223	1	0	0	0	0	1	0	0	0	13802	188	7	5	1240	5	RRP9	3	51972152	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	2024169	51972152	146050278	102	169420											
SUCLG2	8801	broad.mit.edu	37	chr3	67579481	67579481	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccataactgcttggccaaAagacaaggaataacaacctc	6	11	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67579481	C	C	67579481	1	2	223	0	1	0	0	0	0	0	0	0	15483	29	1	5		5	SUCLG2	3	67579481	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	15607329	67579481	130442949	103	169421											
ROBO1	6091	broad.mit.edu	37	chr3	79638956	79638956	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggttaagtattgatgaaaCaaatgcacagcacttacctg	8	8	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79638956	A	A	79638956	1	1	223	0	1	0	0	0	0	0	0	0	13624	493	17	3		3	ROBO1	3	79638956	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	12059475	79638956	118383474	104	169422											
EPHA6	285220	broad.mit.edu	37	chr3	97200325	97200325	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcagaggcaataaggaagGcacaaaccatagttccggtt	10	8	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97200325	A	A	97200325	1	1	223	0	1	0	0	0	0	0	0	0	5213	1218	42	4		4	EPHA6	3	97200325	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	17561369	97200325	100822105	105	169423											
PHLDB2	90102	broad.mit.edu	37	chr3	111564643	111564643	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagctttccaatcatggtAcctctcttttcttgctgtgt	6	11	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111564643	C	C	111564643	1	2	223	0	1	0	0	0	0	0	0	0	11947	406	14	5		5	PHLDB2	3	111564643	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	14364318	111564643	86457787	106	169424											
ADPRH	141	broad.mit.edu	37	chr3	119306535	119306535	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggaaggagcttgcccaccGagcctttttccatggtggag	13	11	0	0	rs150984649	byFrequency	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119306535	T	T	119306535	3	4	223	1	0	0	0	0	1	0	0	0	331	1058	37	3	894	3	ADPRH	3	119306535	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	7741892	119306535	78715895	107	169425											
TMCC1	23023	broad.mit.edu	37	chr3	129370423	129370423	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaggaataaagtgctgaaCgtcctgttgcgagtcttcat	10	8	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129370423	A	A	129370423	2	1	223	1	0	0	0	0	0	0	0	1	16115	523	19	3		3	TMCC1	3	129370423	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	10063888	129370423	68652007	108	169426											
PIK3CB	5291	broad.mit.edu	37	chr3	138478038	138478038	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttaatataagaaatggtagCttcccgaggtacctccaact	7	10	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138478038	G	G	138478038	3	3	223	1	0	0	0	0	1	0	0	0	12009	797	28	4	3150	4	PIK3CB	3	138478038	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	9107615	138478038	59544392	109	169427											
TRIM42	287015	broad.mit.edu	37	chr3	140397023	140397023	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgatagcagtattctggtaGaggaggcatcaagagtcctg	13	7	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140397023	A	A	140397023	1	1	223	0	1	0	0	0	0	0	0	0	16641	957	33	4		4	TRIM42	3	140397023	5'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	1918985	140397023	57625407	110	169428											
TFDP2	7029	broad.mit.edu	37	chr3	141812827	141812827	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattatacttgagggactacCcacagcaagtatttatgaat	7	7	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141812827	A	A	141812827	1	1	223	0	1	0	0	0	0	0	0	0	15921	638	22	2		2	TFDP2	3	141812827	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1415804	141812827	56209603	111	169429											
PLCH1	23007	broad.mit.edu	37	chr3	155200618	155200618	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacaggggttttcctggCaattgcttgtggcatttgat	14	6	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155200618	A	A	155200618	3	1	223	1	0	0	0	0	1	0	0	0	12132	710	25	3	1864	3	PLCH1	3	155200618	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	13387791	155200618	42821812	112	169430											
SCHIP1	29970	broad.mit.edu	37	chr3	159604240	159604240	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaagtttcttggaattGcatgctcctaaaatttgaca	7	6	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159604240	T	T	159604240	1	4	223	0	1	0	0	0	0	0	0	0	14017	1334	46	3		3	SCHIP1	3	159604240	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	4403622	159604240	38418190	113	169431											
NMD3	51068	broad.mit.edu	37	chr3	160956049	160956049	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcggatcacatatattcttCaggctcagacaacttctctt	6	11	5	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160956049	T	T	160956049	1	4	223	0	1	0	0	0	0	0	0	0	10583	841	29	4		4	NMD3	3	160956049	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1351809	160956049	37066381	114	169432											
PRKCI	5584	broad.mit.edu	37	chr3	170020822	170020822	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaataaatttatttttctttCaacagtgacattgtgaggaa	6	4	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170020822	G	G	170020822	1	3	223	0	1	0	0	0	0	0	0	0	12620	841	29	4		4	PRKCI	3	170020822	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	9064773	170020822	28001608	115	169433											
SPATA16	83893	broad.mit.edu	37	chr3	172643064	172643064	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agaaggagttaattttaactCaaacattttttggggcccaa	8	6	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172643064	A	A	172643064	1	1	223	0	1	0	0	0	0	0	0	0	15117	841	29	3		3	SPATA16	3	172643064	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	2622242	172643064	25379366	116	169434											
EIF4G1	1981	broad.mit.edu	37	chr3	184041145	184041145	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtagtggtgtcacataTtgtgctgactagttccatgt	11	6	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	184041145	C	C	184041145	1	2	223	0	1	0	0	0	0	0	0	0	5078	1508	52	5		5	EIF4G1	3	184041145	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	11398081	184041145	13981285	117	169435											
SENP2	59343	broad.mit.edu	37	chr3	185341888	185341888	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgtgagtgacgatcatctAcatgtgacatacttggttgc	10	9	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185341888	G	G	185341888	1	3	223	0	1	0	0	0	0	0	0	0	14160	406	14	5		5	SENP2	3	185341888	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	1300743	185341888	12680542	118	169436											
KNG1	3827	broad.mit.edu	37	chr3	186461616	186461616	+	3'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcacatagccccaaccAcctctgccagcaaccttgag	7	18	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186461616	C	C	186461616	1	2	223	0	1	0	0	0	0	0	0	0	8498	174	6	5		5	KNG1	3	186461616	3'UTR	SNP	A	TCGA-80-5611-01A-01D-1625-08	1119728	186461616	11560814	119	169437											
C3orf59	151963	broad.mit.edu	37	chr3	192635485	192635485	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctggtcgtcgtattcccGctggtcgtgcttcgtaaatt	10	11	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	192635485	T	T	192635485	2	4	223	1	0	0	0	0	0	0	0	1	2259	1086	38	3		3	C3orf59	3	192635485	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	6173869	192635485	5386945	120	169438											
ZNF732	654254	broad.mit.edu	37	chr4	289872	289872	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacatctctatacaaattctGctgggcagggtccaggcatt	9	11	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	289872	C	C	289872	3	2	223	1	0	0	0	0	1	0	0	0	18252	1328	46	4	1693	4	ZNF732	4	289872	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08		289872	190864404	121	169439											
S100P	6286	broad.mit.edu	37	chr4	6698502	6698503	+	Intron	INS	-	AGCCTGAAAA	AGCCTGAAAA													cacagctggccctggccctgINSacagcaaaggtgacgcagat					rs59772164		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGCCTGAAAA	6698503	AGCCTGAAAA	AGCCTGAAAA	6698502	6	5	223	0	1	1	1	0	0	0	0	0	13901	1305	45	0		0	S100P	4	6698502	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	6408630	6698502	184455774	122	169440											
FGFBP2	83888	broad.mit.edu	37	chr4	15964142	15964142	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagggtttccaacaatgtTcccaggccttcttctttgct	9	11	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15964142	A	A	15964142	3	1	223	1	0	0	0	0	1	0	0	0	5918	1783	62	5	64	5	FGFBP2	4	15964142	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	9265640	15964142	175190134	123	169441											
NCAPG	64151	broad.mit.edu	37	chr4	17839528	17839528	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcattttggtctttagacttCtgtctcaagcatataccaca	6	10	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17839528	T	T	17839528	1	4	223	0	1	0	0	0	0	0	0	0	10302	928	32	4		4	NCAPG	4	17839528	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1875386	17839528	173314748	124	169442											
GABRA2	2555	broad.mit.edu	37	chr4	46252429	46252429	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aactattctggacattctgtCaattttgctaacactgttga	6	8	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46252429	A	A	46252429	3	1	223	1	0	0	0	0	1	0	0	0	6221	826	29	3	107	3	GABRA2	4	46252429	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	28412901	46252429	144901847	125	169443											
GABRB1	2560	broad.mit.edu	37	chr4	47163248	47163248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaattctttttttttttttGctttctttatttcacaggat	3	5	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47163248	A	A	47163248	1	1	223	0	1	0	0	0	0	0	0	0	6226	1334	46	4		4	GABRB1	4	47163248	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	910819	47163248	143991028	126	169444											
AASDH	132949	broad.mit.edu	37	chr4	57221273	57221273	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attattaccccagcacctatCaaaaacactgtcagtgttaa	4	11	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57221273	T	T	57221273	1	4	223	0	1	0	0	0	0	0	0	0	22	841	29	4		4	AASDH	4	57221273	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	10058025	57221273	133933003	127	169445											
LPHN3	23284	broad.mit.edu	37	chr4	62897172	62897172	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctacaggtcatgggttatAggtgcaatagctcttctctg	10	9	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62897172	T	T	62897172	2	4	223	1	0	0	0	0	0	0	0	1	9004	410	15	5		5	LPHN3	4	62897172	Silent	SNP	A	TCGA-80-5611-01A-01D-1625-08	5675899	62897172	128257104	128	169446											
UGT2B15	7366	broad.mit.edu	37	chr4	69535446	69535446	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggttctaactgattctaTaaggtcaacattctataata	6	7	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69535446	C	C	69535446	1	2	223	0	1	0	0	0	0	0	0	0	17084	1421	49	5		5	UGT2B15	4	69535446	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	6638274	69535446	121618830	129	169447											
UGT2B4	7363	broad.mit.edu	37	chr4	70346637	70346637	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctctttatatctaaacgaTaagcagaaaagtatcaacat	4	7	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70346637	G	G	70346637	1	3	223	0	1	0	0	0	0	0	0	0	17087	1421	49	5		5	UGT2B4	4	70346637	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	811191	70346637	120807639	130	169448											
ALB	213	broad.mit.edu	37	chr4	74280900	74280901	+	Intron	INS	-	A	A													agtggtaggtttattgttggINSaaaaaaatgtagttctttga							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74280901	A	A	74280900	6	5	223	0	1	1	1	0	0	0	0	0	486	1189	41	0		0	ALB	4	74280900	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	3934263	74280900	116873376	131	169449											
PPEF2	5470	broad.mit.edu	37	chr4	76794373	76794373	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttgtagcaactgttgtgtCacatcaggcccaaaataaca	7	9	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76794373	A	A	76794373	2	1	223	1	0	0	0	0	0	0	0	1	12404	813	29	3		3	PPEF2	4	76794373	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	2513473	76794373	114359903	132	169450											
FRAS1	80144	broad.mit.edu	37	chr4	79334175	79334175	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagagccacatgttcaacaTcgcgatcttaccacagacac	8	13	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79334175	A	A	79334175	3	1	223	1	0	0	0	0	1	0	0	0	6102	1435	50	5	4487	5	FRAS1	4	79334175	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	2539802	79334175	111820101	133	169451											
BMP2K	55589	broad.mit.edu	37	chr4	79793852	79793852	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aacaggcatcacctgaatatCttacctcccctcaagagttc	5	14	3	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79793852	A	A	79793852	3	1	223	1	0	0	0	0	1	0	0	0	1466	913	32	3	1743	3	BMP2K	4	79793852	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	459677	79793852	111360424	134	169452											
DSPP	1834	broad.mit.edu	37	chr4	88535135	88535135	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaagttggacacagcaatAcaggtagtgacagcaatagt	10	6	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88535135	G	G	88535135	3	3	223	1	0	0	0	0	1	0	0	0	4822	391	14	5	1335	5	DSPP	4	88535135	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	8741283	88535135	102619141	135	169453											
DNAJB14	79982	broad.mit.edu	37	chr4	100829754	100829754	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgaaaaaccattacaggatCgtaacactacaagaaatgta	6	7	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100829754	A	A	100829754	1	1	223	0	1	0	0	0	0	0	0	0	4659	899	31	3		3	DNAJB14	4	100829754	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	12294619	100829754	90324522	136	169454											
PPP3CA	5530	broad.mit.edu	37	chr4	101982170	101982170	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccaaatcttagaaatttaTtcttagatttagcaatgaga	5	5	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101982170	C	C	101982170	1	2	223	0	1	0	0	0	0	0	0	0	12498	1508	52	5		5	PPP3CA	4	101982170	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	1152416	101982170	89172106	137	169455											
BANK1	55024	broad.mit.edu	37	chr4	102994958	102994958	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctaaagcagccttgttagGgacttgaaggtatcatttgt	10	6	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102994958	A	A	102994958	1	1	223	0	1	0	0	0	0	0	0	0	1314	1247	43	4		4	BANK1	4	102994958	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	1012788	102994958	88159318	138	169456											
NHEDC1	150159	broad.mit.edu	37	chr4	103822455	103822455	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaagtggggtgcggagactCttgctgtttctagagccaga	14	9	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103822455	G	G	103822455	3	3	223	1	0	0	0	0	1	0	0	0	10495	913	32	4	284	4	NHEDC1	4	103822455	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	827497	103822455	87331821	139	169457											
INTS12	57117	broad.mit.edu	37	chr4	106603997	106603997	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctttaagggatgctgaggGagagctgctggattctgaag	16	6	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106603997	A	A	106603997	3	1	223	1	0	0	0	0	1	0	0	0	7847	1174	41	4	110	4	INTS12	4	106603997	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	2781542	106603997	84550279	140	169458											
COL25A1	84570	broad.mit.edu	37	chr4	109773411	109773411	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttggcccttgtagtcctTgaggtccaggaggtccaggg	14	11	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109773411	C	C	109773411	3	2	223	1	0	0	0	0	1	0	0	0	3716	1812	63	5	730	5	COL25A1	4	109773411	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	3169414	109773411	81380865	141	169459											
EXOSC9	5393	broad.mit.edu	37	chr4	122728874	122728874	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taatattaaacaaacacttcCcttaatagtaaagcaccttg	3	9	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122728874	T	T	122728874	1	4	223	0	1	0	0	0	0	0	0	0	5364	638	22	4		4	EXOSC9	4	122728874	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	12955463	122728874	68425402	142	169460											
FAT4	79633	broad.mit.edu	37	chr4	126370481	126370481	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagatgaaaatgataatgcCcctaggttttctcagatatt	7	6	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126370481	T	T	126370481	2	4	223	1	0	0	0	0	0	0	0	1	5749	610	22	4		4	FAT4	4	126370481	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	3641607	126370481	64783795	143	169461											
SETD7	80854	broad.mit.edu	37	chr4	140444545	140444545	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atctggaagaagagcattggTagaaatgcaagatgaagtcg	13	4	1	5			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140444545	A	A	140444545	3	1	223	1	0	0	0	0	1	0	0	0	14249	1638	57	5	509	5	SETD7	4	140444545	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	14074064	140444545	50709731	144	169462											
ZNF330	27309	broad.mit.edu	37	chr4	142152624	142152624	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcggcttggtcagcactcAtgtctccgttgtaaggtata	10	9	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142152624	G	G	142152624	2	3	223	1	0	0	0	0	0	0	0	1	17974	204	8	5		5	ZNF330	4	142152624	Silent	SNP	A	TCGA-80-5611-01A-01D-1625-08	1708079	142152624	49001652	145	169463											
C4orf51	646603	broad.mit.edu	37	chr4	146617872	146617872	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttttttttctctcactttActgagatatgattgacaaat	4	7	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	146617872	G	G	146617872	1	3	223	0	1	0	0	0	0	0	0	0	2300	406	14	5		5	C4orf51	4	146617872	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	4465248	146617872	44536404	146	169464											
C4orf51	646603	broad.mit.edu	37	chr4	146648137	146648137	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtggtaagcccaacatttCtcagcaatctcttacctgta	7	11	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146648137	A	A	146648137	1	1	223	0	1	0	0	0	0	0	0	0	2300	928	32	3		3	C4orf51	4	146648137	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	30265	146648137	44506139	147	169465											
TLR2	7097	broad.mit.edu	37	chr4	154626147	154626147	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgactccattgaaaagagCcacaaaactgtctttgtgct	7	9	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154626147	T	T	154626147	2	4	223	1	0	0	0	0	0	0	0	1	16074	738	26	4		4	TLR2	4	154626147	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	7978010	154626147	36528129	148	169466											
FGA	2243	broad.mit.edu	37	chr4	155505252	155505252	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctagcaaagaagacagagTgctcccattcccacttcttc	6	14	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155505252	G	G	155505252	1	3	223	0	1	0	0	0	0	0	0	0	5887	1711	59	5		5	FGA	4	155505252	3'UTR	SNP	T	TCGA-80-5611-01A-01D-1625-08	879105	155505252	35649024	149	169467											
RBM46	166863	broad.mit.edu	37	chr4	155720435	155720435	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcacttaccctttttatcCtggaacaaagcttactccaa	4	12	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155720435	T	T	155720435	3	4	223	1	0	0	0	0	1	0	0	0	13248	681	24	4	1131	4	RBM46	4	155720435	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	215183	155720435	35433841	150	169468											
TMEM192	201931	broad.mit.edu	37	chr4	166009711	166009711	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tacaatctgccaggctctggGaaggagtgctgcatgcacag	13	10	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166009711	A	A	166009711	2	1	223	1	0	0	0	0	0	0	0	1	16238	1165	41	4		4	TMEM192	4	166009711	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	10289276	166009711	25144565	151	169469											
DDX60L	91351	broad.mit.edu	37	chr4	169344796	169344796	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttgccagatcattaaagCctaaatatttaaggcattta	6	6	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169344796	T	T	169344796	3	4	223	1	0	0	0	0	1	0	0	0	4412	739	26	4	3156	4	DDX60L	4	169344796	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	3335085	169344796	21809480	152	169470											
TRIML2	205860	broad.mit.edu	37	chr4	189020308	189020308	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcagtttctccatgttctCtctccccacacggcccagtc	5	18	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189020308	G	G	189020308	3	3	223	1	0	0	0	0	1	0	0	0	16676	922	32	4	827	4	TRIML2	4	189020308	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	19675512	189020308	2133968	153	169471											
SEMA5A	9037	broad.mit.edu	37	chr5	9379955	9379955	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttataggagatgactggaTgctcggttctctggcactga	12	8	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9379955	C	C	9379955	3	2	223	1	0	0	0	0	1	0	0	0	14150	1464	51	5	3204	5	SEMA5A	5	9379955	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08		9379955	171535305	154	169472											
FBXL7	23194	broad.mit.edu	37	chr5	15928384	15928384	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtggaccgcgccctcaaGgtgctgacccgcagactctg	12	15	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15928384	T	T	15928384	3	4	223	1	0	0	0	0	1	0	0	0	5781	991	35	2	523	2	FBXL7	5	15928384	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	6548429	15928384	164986876	155	169473											
MYO10	4651	broad.mit.edu	37	chr5	16694647	16694647	+	Silent	SNP	C	T	T													cagccttgcttgagggcctcCtgcttggagcggaaccacaa							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16694647	T	T	16694647	2	4	223	1	0	0	0	0	0	0	0	1	10156	680	24	4		4	MYO10	5	16694647	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	766263	16694647	164220613	156	169474	706	2									
MYO10	4651	broad.mit.edu	37	chr5	16694657	16694657	+	Missense_Mutation	SNP	C	A	A													tgagggcctcctgcttggagCggaaccacaagaaggtttca							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16694657	A	A	16694657	3	1	223	1	0	0	0	0	1	0	0	0	10156	768	27	3	2613	3	MYO10	5	16694657	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	10	16694657	164220603	157	169475	706	2									
HEATR7B2	133558	broad.mit.edu	37	chr5	41008605	41008605	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttgtttcttcatggacaAtggatgctatgacagaaagc	10	8	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41008605	G	G	41008605	1	3	223	0	1	0	0	0	0	0	0	0	7102	116	4	5		5	HEATR7B2	5	41008605	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	24313948	41008605	139906655	158	169476											
HAPLN1	1404	broad.mit.edu	37	chr5	82969179	82969179	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattaagaaacactagcccaGcatctcaactctaagtaact	4	11	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82969179	A	A	82969179	1	1	223	0	1	0	0	0	0	0	0	0	7020	986	34	4		4	HAPLN1	5	82969179	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	41960574	82969179	97946081	159	169477											
FAM81B	153643	broad.mit.edu	37	chr5	94782234	94782234	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatgtttaaattaacttAtttaaatgaaacaaaacatt	2	3	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94782234	C	C	94782234	1	2	223	0	1	0	0	0	0	0	0	0	5682	464	16	5		5	FAM81B	5	94782234	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	11813055	94782234	86133026	160	169478											
TTC37	9652	broad.mit.edu	37	chr5	94839460	94839460	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tacatctttctgtatgtgtgCtcatcatgattaaactcgac	6	9	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	94839460	G	G	94839460	1	3	223	0	1	0	0	0	0	0	0	0	16831	812	28	4		4	TTC37	5	94839460	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	57226	94839460	86075800	161	169479											
TSSK1B	83942	broad.mit.edu	37	chr5	112770552	112770552	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatggtgccaggaatgccCagtgcctctgaggctgccct	12	14	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112770552	T	T	112770552	1	4	223	0	1	0	0	0	0	0	0	0	16793	609	21	4		4	TSSK1B	5	112770552	5'UTR	SNP	C	TCGA-80-5611-01A-01D-1625-08	17931092	112770552	68144708	162	169480											
DMXL1	1657	broad.mit.edu	37	chr5	118502310	118502310	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accattttttttcctttataGagctgaaaaaaacaccagga	5	8	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118502310	T	T	118502310	5	4	223	1	0	0	0	0	0	0	1	0	4634	956	33	3	5056	3	DMXL1	5	118502310	Splice_Site	SNP	G	TCGA-80-5611-01A-01D-1625-08	5731758	118502310	62412950	163	169481											
ADAMTS19	171019	broad.mit.edu	37	chr5	128797440	128797440	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcttctttcagcacctgtgGaggtggcctggtaagcgcct	14	11	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128797440	T	T	128797440	3	4	223	1	0	0	0	0	1	0	0	0	264	1174	41	3	725	3	ADAMTS19	5	128797440	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	10295130	128797440	52117820	164	169482											
KIF3A	11127	broad.mit.edu	37	chr5	132038516	132038516	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gattatagatatttagctttCcactagaaaagttaaatctc	5	6	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132038516	T	T	132038516	1	4	223	0	1	0	0	0	0	0	0	0	8370	870	30	4		4	KIF3A	5	132038516	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	3241076	132038516	48876744	165	169483											
TIFAB	497189	broad.mit.edu	37	chr5	134785191	134785191	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgggagatgccttcccattCgtcagtttcctcagcctcag	9	14	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134785191	G	G	134785191	3	3	223	1	0	0	0	0	1	0	0	0	16018	893	31	4	50	4	TIFAB	5	134785191	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	2746675	134785191	46130069	166	169484											
CDC25C	995	broad.mit.edu	37	chr5	137627557	137627557	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaaaaagtaaaagtaaaGaggaagaagacaaaaaaggc	12	2	0	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137627557	A	A	137627557	1	1	223	0	1	0	0	0	0	0	0	0	3094	957	33	4		4	CDC25C	5	137627557	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	2842366	137627557	43287703	167	169485											
PCDHA4	56144	broad.mit.edu	37	chr5	140188847	140188847	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtgggtcccgatgctgCgctggtggatgtcaacgtat	15	10	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140188847	T	T	140188847	3	4	223	1	0	0	0	0	1	0	0	0	11620	768	27	4	2077	4	PCDHA4	5	140188847	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	2561290	140188847	40726413	168	169486											
PCDHA11	56138	broad.mit.edu	37	chr5	140249915	140249915	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactactcgttggtgctggaCagcgccctggaccgcgagaa	13	12	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140249915	T	T	140249915	2	4	223	1	0	0	0	0	0	0	0	1	11615	477	17	4		4	PCDHA11	5	140249915	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	61068	140249915	40665345	169	169487											
PCDHB1	29930	broad.mit.edu	37	chr5	140432448	140432448	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgactgttcgagaaaacAacagtcctgcggtttttatt	8	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140432448	C	C	140432448	3	2	223	1	0	0	0	0	1	0	0	0	11628	130	5	5	1395	5	PCDHB1	5	140432448	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	182533	140432448	40482812	170	169488											
PCDHGA2	56113	broad.mit.edu	37	chr5	140790303	140790303	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaatccatagctttttAcaatattttctcaatgtttt	2	6	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140790303	C	C	140790303	1	2	223	0	1	0	0	0	0	0	0	0	11648	406	14	5		5	PCDHGA2	5	140790303	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	357855	140790303	40124957	171	169489											
NR3C1	2908	broad.mit.edu	37	chr5	142712224	142712224	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caggtttaagcgactggaatCattcctacatgattcctggc	9	10	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142712224	A	A	142712224	1	1	223	0	1	0	0	0	0	0	0	0	10725	841	29	3		3	NR3C1	5	142712224	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1921921	142712224	38203036	172	169490											
CAMK2A	815	broad.mit.edu	37	chr5	149633053	149633053	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctctatggccaggccaaaGtctgccagcttcactgcggc	10	15	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149633053	A	A	149633053	2	1	223	1	0	0	0	0	0	0	0	1	2625	1020	36	4		4	CAMK2A	5	149633053	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	6920829	149633053	31282207	173	169491											
GALNT10	55568	broad.mit.edu	37	chr5	153792479	153792479	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggcacagggctgtgtgcaGacacaaagcacggggccttg	16	10	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153792479	C	C	153792479	3	2	223	1	0	0	0	0	1	0	0	0	6270	942	33	4	1455	4	GALNT10	5	153792479	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4159426	153792479	27122781	174	169492											
ATP10B	23120	broad.mit.edu	37	chr5	160049494	160049494	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaggaggtggtggagagGgaagccttggcaggtctgct	20	5	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160049494	T	T	160049494	2	4	223	1	0	0	0	0	0	0	0	1	1121	1219	43	2		2	ATP10B	5	160049494	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	6257015	160049494	20865766	175	169493											
WWC1	23286	broad.mit.edu	37	chr5	167833354	167833355	+	Intron	DNP	TG	CT	CT													tatgcaagttcctgttgatgTgggtgccatcttgatttctc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	167833355	CT	CT	167833354	1	2	223	0	1	0	0	0	0	0	0	0	17538	1711	59	5		5	WWC1	5	167833354	Intron	DNP	TG	TCGA-80-5611-01A-01D-1625-08	7783860	167833354	13081906	176	169494											
SLIT3	6586	broad.mit.edu	37	chr5	168201116	168201116	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttttattattctagcttcCctgcaggctctagaactcct	5	11	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168201116	T	T	168201116	1	4	223	0	1	0	0	0	0	0	0	0	14855	638	22	4		4	SLIT3	5	168201116	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	367762	168201116	12714144	177	169495											
FOXI1	2299	broad.mit.edu	37	chr5	169533408	169533408	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgcctcactctcagccagatCtaccagtacgtggccgacaa	8	16	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169533408	G	G	169533408	3	3	223	1	0	0	0	0	1	0	0	0	6069	903	32	4	449	4	FOXI1	5	169533408	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	1332292	169533408	11381852	178	169496											
HK3	3101	broad.mit.edu	37	chr5	176314276	176314276	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctgcacgcctgtggtcaCacgtaccaggaggacacgga	13	12	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176314276	T	T	176314276	3	4	223	1	0	0	0	0	1	0	0	0	7259	478	17	4	1140	4	HK3	5	176314276	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	6780868	176314276	4600984	179	169497											
NSD1	64324	broad.mit.edu	37	chr5	176637505	176637505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaaaagcaaaacagaagcCtctcattagtaactcacata	6	9	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176637505	A	A	176637505	3	1	223	1	0	0	0	0	1	0	0	0	10764	681	24	2	2119	2	NSD1	5	176637505	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	323229	176637505	4277755	180	169498											
GNB2L1	10399	broad.mit.edu	37	chr5	180668496	180668496	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatggctcactttacctggAcagtgtatttgcacacaccc	8	12	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180668496	G	G	180668496	3	3	223	1	0	0	0	0	1	0	0	0	6582	275	10	5	552	5	GNB2L1	5	180668496	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	4030991	180668496	246764	181	169499											
DSP	1832	broad.mit.edu	37	chr6	7572277	7572277	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggatcttctcaccacatCacagtgaaaattaacgagct	7	11	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7572277	A	A	7572277	2	1	223	1	0	0	0	0	0	0	0	1	4821	816	29	3		3	DSP	6	7572277	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08		7572277	163542790	182	169500											
PRL	5617	broad.mit.edu	37	chr6	22290538	22290538	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	agatgatacagaggctcattCcaggatcgcaatatgctgac	10	9	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22290538	G	G	22290538	3	3	223	1	0	0	0	0	1	0	0	0	12634	856	30	4	334	4	PRL	6	22290538	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	14718261	22290538	148824529	183	169501											
C6orf62	81688	broad.mit.edu	37	chr6	24706384	24706384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctactctggcatataaggaCggaggtgatcctctatggtg	12	8	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24706384	A	A	24706384	3	1	223	1	0	0	0	0	1	0	0	0	2392	536	19	3	22	3	C6orf62	6	24706384	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	2415846	24706384	146408683	184	169502											
HIST1H3H	8357	broad.mit.edu	37	chr6	27778233	27778233	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaaggacatccagctcGcacgtcgtatccgcggcgag	12	15	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27778233	C	C	27778233	3	2	223	1	0	0	0	0	1	0	0	0	7229	1087	38	4	384	4	HIST1H3H	6	27778233	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	3071849	27778233	143336834	185	169503											
HIST1H2BM	8342	broad.mit.edu	37	chr6	27782008	27782008	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaggttaaagattaacacCgaaacatcatgagtgtactg	8	7	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27782008	T	T	27782008	1	4	223	0	1	0	0	0	0	0	0	0	7219	667	23	4		4	HIST1H2BM	6	27782008	5'Flank	SNP	C	TCGA-80-5611-01A-01D-1625-08	3775	27782008	143333059	186	169504											
HIST1H2AM	8336	broad.mit.edu	37	chr6	27860906	27860906	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggcgcgagccttgccgcCctgcttgccacgtccagaca	11	17	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27860906	A	A	27860906	3	1	223	1	0	0	0	0	1	0	0	0	7206	623	22	2	374	2	HIST1H2AM	6	27860906	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	78898	27860906	143254161	187	169505											
CCHCR1	54535	broad.mit.edu	37	chr6	31122154	31122154	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtttattttcaccaaaggtCtcatcactctactactcact	3	12	5	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31122154	G	G	31122154	1	3	223	0	1	0	0	0	0	0	0	0	2905	928	32	4		4	CCHCR1	6	31122154	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	3261248	31122154	139992913	188	169506											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33095889	33095889	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gagtggagtgagggtctgatGaccctctagactccacctct	12	11	3	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33095889	A	A	33095889	1	1	223	0	1	0	0	0	0	0	0	0	7270	1305	45	4		4	HLA-DPB1	6	33095889	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	1973735	33095889	138019178	189	169507											
PNPLA1	285848	broad.mit.edu	37	chr6	36262198	36262199	+	Intron	DNP	GG	TT	TT													tgagaggcaggaggggtctgGggagtagcagaaggtaccag							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	36262199	TT	TT	36262198	1	4	223	0	1	0	0	0	0	0	0	0	12259	1247	43	2		2	PNPLA1	6	36262198	Intron	DNP	GG	TCGA-80-5611-01A-01D-1625-08	3166309	36262198	134852869	190	169508											
CPNE5	57699	broad.mit.edu	37	chr6	36730750	36730750	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccggtaactggtggtgaActccccaatgaagtcatggc	11	12	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36730750	G	G	36730750	3	3	223	1	0	0	0	0	1	0	0	0	3847	43	2	5	1022	5	CPNE5	6	36730750	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	468552	36730750	134384317	191	169509											
TBC1D22B	55633	broad.mit.edu	37	chr6	37298895	37298895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggctgcttctcgccgagGcatacagactcaagtacatg	11	11	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37298895	T	T	37298895	3	4	223	1	0	0	0	0	1	0	0	0	15731	1203	42	3	1515	3	TBC1D22B	6	37298895	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	568145	37298895	133816172	192	169510											
UBR2	23304	broad.mit.edu	37	chr6	42604830	42604830	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttatactgatggtgaacagCcaatcacactaagcatttgt	8	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42604830	T	T	42604830	3	4	223	1	0	0	0	0	1	0	0	0	17028	739	26	4	1960	4	UBR2	6	42604830	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	5305935	42604830	128510237	193	169511											
CUL7	9820	broad.mit.edu	37	chr6	43013285	43013286	+	Intron	INS	-	C	C													cctgtttatggggctcagagINSccccctacccagggccacac							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43013286	C	C	43013285	6	5	223	0	1	1	1	0	0	0	0	0	4093	986	34	0		0	CUL7	6	43013285	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	408455	43013285	128101782	194	169512											
TTBK1	84630	broad.mit.edu	37	chr6	43251531	43251531	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactcactgcccaatggccCggcccttgcagacgggccag	11	16	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43251531	T	T	43251531	3	4	223	1	0	0	0	0	1	0	0	0	16802	652	23	4	3103	4	TTBK1	6	43251531	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	238246	43251531	127863536	195	169513											
RUNX2	860	broad.mit.edu	37	chr6	45514521	45514521	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctatcattattttaattgAtatttacagatttttccctc	2	7	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45514521	T	T	45514521	1	4	223	0	1	0	0	0	0	0	0	0	13859	348	12	5		5	RUNX2	6	45514521	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	2262990	45514521	125600546	196	169514											
CYP39A1	51302	broad.mit.edu	37	chr6	46521643	46521643	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgaaagatgtataaatatCtgccaacagagaatatctag	8	5	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46521643	T	T	46521643	1	4	223	0	1	0	0	0	0	0	0	0	4210	928	32	4		4	CYP39A1	6	46521643	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1007122	46521643	124593424	197	169515											
GPR115	221393	broad.mit.edu	37	chr6	47681478	47681478	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttcaggttttagaaatcaActttgtacaacaatgtgtaa	6	5	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47681478	T	T	47681478	1	4	223	0	1	0	0	0	0	0	0	0	6697	58	2	5		5	GPR115	6	47681478	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	1159835	47681478	123433589	198	169516											
GCM1	8521	broad.mit.edu	37	chr6	52993844	52993844	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtacaaataagagctccatcAgattttcctcattccttaca	4	11	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52993844	T	T	52993844	1	4	223	0	1	0	0	0	0	0	0	0	6359	203	7	5		5	GCM1	6	52993844	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	5312366	52993844	118121223	199	169517											
DST	667	broad.mit.edu	37	chr6	56497598	56497598	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccattgagagcaaaaaaTagccagaactaaacacctat	5	10	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56497598	C	C	56497598	1	2	223	0	1	0	0	0	0	0	0	0	4823	1421	49	5		5	DST	6	56497598	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	3503754	56497598	114617469	200	169518											
COL12A1	1303	broad.mit.edu	37	chr6	75836119	75836119	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggagaaggtgaaggatcCcaggacaccctgaatcttgt	12	9	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75836119	A	A	75836119	3	1	223	1	0	0	0	0	1	0	0	0	3701	624	22	2	2895	2	COL12A1	6	75836119	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	19338521	75836119	95278948	201	169519											
MYO6	4646	broad.mit.edu	37	chr6	76564845	76564845	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attaatttcaatgaaaatatAtttctattaggtggttgtaa	6	2	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76564845	G	G	76564845	1	3	223	0	1	0	0	0	0	0	0	0	10175	464	16	5		5	MYO6	6	76564845	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	728726	76564845	94550222	202	169520											
DOPEY1	23033	broad.mit.edu	37	chr6	83810352	83810352	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatcattttttataatactAtgctagaaaatggaagtaaa	6	3	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	83810352	G	G	83810352	1	3	223	0	1	0	0	0	0	0	0	0	4747	464	16	5		5	DOPEY1	6	83810352	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	7245507	83810352	87304715	203	169521											
SPACA1	81833	broad.mit.edu	37	chr6	88769165	88769165	+	Intron	DEL	A	-	-													tttgttatttttttctttttAaatagcaatccattatactt							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	88769165	-	-	88769165	6	5	223	0	1	1	0	1	0	0	0	0	15086	377	13	0		0	SPACA1	6	88769165	Intron	DEL	A	TCGA-80-5611-01A-01D-1625-08	4958813	88769165	82345902	204	169522											
GPR63	81491	broad.mit.edu	37	chr6	97246334	97246334	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcatcacccaaaatgtcaGccagttccaatattcacacc	4	14	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97246334	A	A	97246334	1	1	223	0	1	0	0	0	0	0	0	0	6769	986	34	4		4	GPR63	6	97246334	3'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	8477169	97246334	73868733	205	169523											
USP45	85015	broad.mit.edu	37	chr6	99894011	99894011	+	Frame_Shift_Del	DEL	T	-	-													tatcaccactgtcagtctccTtggtgtacagcagtttacct							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	99894011	-	-	99894011	7	5	223	1	0	1	0	1	0	0	0	0	17203	1609	56	0	827	0	USP45	6	99894011	Frame_Shift_Del	DEL	T	TCGA-80-5611-01A-01D-1625-08	2647677	99894011	71221056	206	169524											
HDAC2	3066	broad.mit.edu	37	chr6	114274317	114274317	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatgttactgcatacgtaGtaattcaattctgcatacaa	5	8	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114274317	A	A	114274317	1	1	223	0	1	0	0	0	0	0	0	0	7074	1044	36	4		4	HDAC2	6	114274317	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	14380306	114274317	56840750	207	169525											
SLC35F1	222553	broad.mit.edu	37	chr6	118475787	118475787	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actagccgtcagacaaggtaAgctcacaaaagcaccaggaa	9	11	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118475787	T	T	118475787	1	4	223	0	1	0	0	0	0	0	0	0	14702	87	3	5		5	SLC35F1	6	118475787	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	4201470	118475787	52639280	208	169526											
EYA4	2070	broad.mit.edu	37	chr6	133767772	133767772	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttactgctctaccaggtctAtggaaatgcaggacctagca	9	11	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133767772	G	G	133767772	3	3	223	1	0	0	0	0	1	0	0	0	5374	449	16	5	98	5	EYA4	6	133767772	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	15291985	133767772	37347295	209	169527											
LATS1	9113	broad.mit.edu	37	chr6	150004968	150004968	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactaatgttatatagttcCatgttatgactatttctgtt	5	6	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150004968	T	T	150004968	3	4	223	1	0	0	0	0	1	0	0	0	8718	594	21	4	2155	4	LATS1	6	150004968	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	16237196	150004968	21110099	210	169528											
IPCEF1	26034	broad.mit.edu	37	chr6	154587022	154587022	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aactgacaatatctaaagccTggggtattccaaaggatact	8	8	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154587022	A	A	154587022	1	1	223	0	1	0	0	0	0	0	0	0	7861	1595	55	5		5	IPCEF1	6	154587022	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	4582054	154587022	16528045	211	169529											
PLG	5340	broad.mit.edu	37	chr6	161173128	161173128	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgcagttgccatttctTtcatctttttaaacacaggt	8	8	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161173128	C	C	161173128	1	2	223	0	1	0	0	0	0	0	0	0	12181	1856	64	5		5	PLG	6	161173128	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	6586106	161173128	9941939	212	169530											
C6orf118	168090	broad.mit.edu	37	chr6	165715261	165715261	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcctggtagcacagcaCcttcaagtcgggcagccgga	13	14	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165715261	T	T	165715261	3	4	223	1	0	0	0	0	1	0	0	0	2346	507	18	4	891	4	C6orf118	6	165715261	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	4542133	165715261	5399806	213	169531											
RPS6KA2	6196	broad.mit.edu	37	chr6	166944759	166944759	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaccttcatggcgtagaGctgcccagcgtcggacccct	12	14	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166944759	A	A	166944759	3	1	223	1	0	0	0	0	1	0	0	0	13762	971	34	4	2018	4	RPS6KA2	6	166944759	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	1229498	166944759	4170308	214	169532											
MLLT4	4301	broad.mit.edu	37	chr6	168325807	168325807	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtgcgagttgttctctccAgtctttcggcattgaatcag	10	10	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168325807	T	T	168325807	1	4	223	0	1	0	0	0	0	0	0	0	9722	203	7	5		5	MLLT4	6	168325807	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	1381048	168325807	2789260	215	169533											
EIF2AK1	27102	broad.mit.edu	37	chr7	6078144	6078144	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctacatgagatggggaaggTgtgactgtgtctatttcccg	13	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6078144	A	A	6078144	1	1	223	0	1	0	0	0	0	0	0	0	5036	1711	59	5		5	EIF2AK1	7	6078144	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08		6078144	153060519	216	169534											
C7orf26	79034	broad.mit.edu	37	chr7	6634192	6634192	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccgagattctgctgccagTtcatcacctccgttaccgcg	9	16	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6634192	G	G	6634192	3	3	223	1	0	0	0	0	1	0	0	0	2406	1725	60	5	551	5	C7orf26	7	6634192	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	556048	6634192	152504471	217	169535											
DNAH11	8701	broad.mit.edu	37	chr7	21901534	21901534	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtggaagacatgcagggaCgcatctctatcctgatggag	14	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21901534	G	G	21901534	3	3	223	1	0	0	0	0	1	0	0	0	4639	536	19	4	11562	4	DNAH11	7	21901534	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	15267342	21901534	137237129	218	169536											
GLI3	2737	broad.mit.edu	37	chr7	42003993	42003993	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaagaactcatgtcccCgatagccatgttggtggtgc	11	11	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42003993	T	T	42003993	3	4	223	1	0	0	0	0	1	0	0	0	6503	652	23	4	68	4	GLI3	7	42003993	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	20102459	42003993	117134670	219	169537											
ZNF479	90827	broad.mit.edu	37	chr7	57194508	57194508	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agagatttttatttgactcaAgttaaaaaagagagtaaaaa	7	2	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57194508	T	T	57194508	1	4	223	0	1	0	0	0	0	0	0	0	18060	87	3	5		5	ZNF479	7	57194508	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	15190515	57194508	101944155	220	169538											
TYW1	55253	broad.mit.edu	37	chr7	66479459	66479459	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggttagaggaagcatccattGattttcgatttggcaaaact	10	6	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66479459	T	T	66479459	3	4	223	1	0	0	0	0	1	0	0	0	16944	1290	45	3	499	3	TYW1	7	66479459	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	9284951	66479459	92659204	221	169539											
SAMD9	54809	broad.mit.edu	37	chr7	92735313	92735313	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgttcagtcaaaatttccCtgtgtttttggtcaatctta	6	8	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92735313	A	A	92735313	3	1	223	1	0	0	0	0	1	0	0	0	13937	681	24	2	4675	2	SAMD9	7	92735313	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	26255854	92735313	66403350	222	169540											
PPP1R9A	55607	broad.mit.edu	37	chr7	94916567	94916567	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctctgtagtgaagggTttccttgtgttaaatagctt	9	7	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94916567	A	A	94916567	1	1	223	0	1	0	0	0	0	0	0	0	12479	1740	60	5		5	PPP1R9A	7	94916567	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	2181254	94916567	64222096	223	169541											
TFR2	7036	broad.mit.edu	37	chr7	100230991	100230991	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcggggctggtgagcgccccGagccgcgtccccctccccgc	15	20	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100230991	T	T	100230991	1	4	223	0	1	0	0	0	0	0	0	0	15934	1073	37	3		3	TFR2	7	100230991	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	5314424	100230991	58907672	224	169542											
FAM3C	10447	broad.mit.edu	37	chr7	121000097	121000097	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctgtaaagtttacatacTtggttgctccatcatcgtat	7	8	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121000097	A	A	121000097	3	1	223	1	0	0	0	0	1	0	0	0	5609	1623	56	5	228	5	FAM3C	7	121000097	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	20769106	121000097	38138566	225	169543											
CALU	813	broad.mit.edu	37	chr7	128399046	128399046	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggaggagttcacagctttCctgcaccctgaggagtatga	12	9	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128399046	A	A	128399046	3	1	223	1	0	0	0	0	1	0	0	0	2620	854	30	3	745	3	CALU	7	128399046	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	7398949	128399046	30739617	226	169544											
DGKI	9162	broad.mit.edu	37	chr7	137363363	137363363	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtctcccgagacgttggtCtccagccacaggtgttctcc	11	14	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	137363363	G	G	137363363	3	3	223	1	0	0	0	0	1	0	0	0	4511	912	32	4	2779	4	DGKI	7	137363363	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	8964317	137363363	21775300	227	169545											
CNTNAP2	26047	broad.mit.edu	37	chr7	147259454	147259454	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctatgtttttatcacaacAtctaatcagcaacatattgc	4	9	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	147259454	C	C	147259454	1	2	223	0	1	0	0	0	0	0	0	0	3679	232	8	5		5	CNTNAP2	7	147259454	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	9896091	147259454	11879209	228	169546											
ZNF398	57541	broad.mit.edu	37	chr7	148873545	148873545	+	Intron	DEL	C	-	-													catgaaggccatttttttttCctcccacaaattagagcctg							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	148873545	-	-	148873545	6	5	223	0	1	1	0	1	0	0	0	0	18012	870	30	0		0	ZNF398	7	148873545	Intron	DEL	C	TCGA-80-5611-01A-01D-1625-08	1614091	148873545	10265118	229	169547											
TMEM176B	28959	broad.mit.edu	37	chr7	150491059	150491059	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttactcaccacagaccccGcccagaaggcacagcctgag	8	18	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150491059	A	A	150491059	3	1	223	1	0	0	0	0	1	0	0	0	16216	1087	38	4	527	4	TMEM176B	7	150491059	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	1617514	150491059	8647604	230	169548											
AGAP3	116988	broad.mit.edu	37	chr7	150817035	150817035	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggtgcccgtcccgccccTgacccggagctgccctcagc	11	21	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150817035	A	A	150817035	1	1	223	0	1	0	0	0	0	0	0	0	369	1595	55	5		5	AGAP3	7	150817035	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	325976	150817035	8321628	231	169549											
DPP6	1804	broad.mit.edu	37	chr7	154681260	154681260	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtacagtacgcatgttactCtgttttgaacctggagcaag	11	8	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154681260	T	T	154681260	1	4	223	0	1	0	0	0	0	0	0	0	4770	928	32	4		4	DPP6	7	154681260	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	3864225	154681260	4457403	232	169550											
ESYT2	57488	broad.mit.edu	37	chr7	158528056	158528056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttgactgtctttatagCccatgatttataaacaagca	6	7	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158528056	A	A	158528056	1	1	223	0	1	0	0	0	0	0	0	0	5307	754	26	3		3	ESYT2	7	158528056	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	3846796	158528056	610607	233	169551											
DLGAP2	9228	broad.mit.edu	37	chr8	1485864	1485864	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgcaaggatggaaggataGatggaaggatggatggatgg	19	1	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1485864	A	A	1485864	1	1	223	0	1	0	0	0	0	0	0	0	4600	957	33	4		4	DLGAP2	8	1485864	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08		1485864	144878158	234	169552											
NEFL	4747	broad.mit.edu	37	chr8	24813515	24813515	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagcgcgcctgcaggttgCgcagggtctcctccagccct	12	16	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24813515	T	T	24813515	3	4	223	1	0	0	0	0	1	0	0	0	10410	768	27	4	1133	4	NEFL	8	24813515	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	23327651	24813515	121550507	235	169553											
EBF2	64641	broad.mit.edu	37	chr8	25720216	25720216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacatgtcaatttccaaaGcacattaccttagctaatct	3	11	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25720216	T	T	25720216	1	4	223	0	1	0	0	0	0	0	0	0	4921	986	34	3		3	EBF2	8	25720216	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	906701	25720216	120643806	236	169554											
GSR	2936	broad.mit.edu	37	chr8	30537216	30537216	+	Intron	SNP	C	T	T													gaagagaaacattttcttttCtttcttcttttttttttttt							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30537216	T	T	30537216	1	4	223	0	1	0	0	0	0	0	0	0	6894	928	32	4		4	GSR	8	30537216	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	4817000	30537216	115826806	237	169555	707	2									
GSR	2936	broad.mit.edu	37	chr8	30537223	30537223	+	Intron	SNP	C	T	T													aacattttcttttctttcttCttttttttttttttttgaga					rs145175255		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30537223	T	T	30537223	1	4	223	0	1	0	0	0	0	0	0	0	6894	928	32	4		4	GSR	8	30537223	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	7	30537223	115826799	238	169556	707	2									
KCNU1	157855	broad.mit.edu	37	chr8	36788569	36788569	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agataaggataaagtctatgGtgtggcagatagctgcacgt	13	5	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36788569	A	A	36788569	3	1	223	1	0	0	0	0	1	0	0	0	8163	1261	44	4	2935	4	KCNU1	8	36788569	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	6251346	36788569	109575453	239	169557											
ANK1	286	broad.mit.edu	37	chr8	41519378	41519378	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcactgggatcctccagggGcccctctacagtcacctcct	8	18	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41519378	A	A	41519378	3	1	223	1	0	0	0	0	1	0	0	0	620	1203	42	4	196	4	ANK1	8	41519378	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4730809	41519378	104844644	240	169558											
ANK1	286	broad.mit.edu	37	chr8	41574379	41574379	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgatccccaggccacagcaCtgcagccccgcctggaatga	11	16	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41574379	G	G	41574379	1	3	223	0	1	0	0	0	0	0	0	0	620	580	20	4		4	ANK1	8	41574379	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	55001	41574379	104789643	241	169559											
CSMD3	114788	broad.mit.edu	37	chr8	113331070	113331070	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaccattgaataccttgAcaaactggaggtgctccatc	9	10	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113331070	T	T	113331070	4	4	223	1	0	0	0	0	0	1	0	0	3980	273	10	5	3867	5	CSMD3	8	113331070	Nonsense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	71756691	113331070	33032952	242	169560											
FER1L6	654463	broad.mit.edu	37	chr8	125107213	125107213	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatatcccggaagtcgggtgTaggctggttcctgaacacat	13	9	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125107213	C	C	125107213	2	2	223	1	0	0	0	0	0	0	0	1	5872	1644	57	5		5	FER1L6	8	125107213	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08	11776143	125107213	21256809	243	169561											
SQLE	6713	broad.mit.edu	37	chr8	126011698	126011698	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatttttataagaagttcgGggacttcatcactttggcca	8	8	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126011698	T	T	126011698	3	4	223	1	0	0	0	0	1	0	0	0	15246	1232	43	2	55	2	SQLE	8	126011698	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	904485	126011698	20352324	244	169562											
PHF20L1	51105	broad.mit.edu	37	chr8	133851588	133851588	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagttgatgaaaaatccgAgtaagtgcagtcctctgtga	11	7	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133851588	G	G	133851588	1	3	223	0	1	0	0	0	0	0	0	0	11927	319	11	5		5	PHF20L1	8	133851588	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	7839890	133851588	12512434	245	169563											
MAPK15	225689	broad.mit.edu	37	chr8	144803088	144803088	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagcccatgagggacagcCcccacagcagggaccctgct	12	17	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144803088	T	T	144803088	1	4	223	0	1	0	0	0	0	0	0	0	9369	638	22	4		4	MAPK15	8	144803088	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	10951500	144803088	1560934	246	169564											
ZNF16	7564	broad.mit.edu	37	chr8	146156498	146156498	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctgatgctgaatgagggTtgagctctggctgaaggttt	14	7	2	5			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146156498	C	C	146156498	3	2	223	1	0	0	0	0	1	0	0	0	17864	1725	60	5	377	5	ZNF16	8	146156498	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	1353410	146156498	207524	247	169565											
SMARCA2	6595	broad.mit.edu	37	chr9	2056633	2056633	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagttcaggaacctagcttCtgttagggaaggctgtctaa	12	7	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2056633	G	G	2056633	1	3	223	0	1	0	0	0	0	0	0	0	14883	928	32	4		4	SMARCA2	9	2056633	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08		2056633	139156798	248	169566											
CDC37L1	55664	broad.mit.edu	37	chr9	4697785	4697785	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaatggaacaaatagcacAtcaagctgttgtaatgcagt	8	6	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4697785	G	G	4697785	3	3	223	1	0	0	0	0	1	0	0	0	3099	217	8	5	671	5	CDC37L1	9	4697785	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	2641152	4697785	136515646	249	169567											
RLN2	6019	broad.mit.edu	37	chr9	5300119	5300119	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaaatctagcaagagaTcttttggtacaaccaacatg	7	9	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5300119	C	C	5300119	2	2	223	1	0	0	0	0	0	0	0	1	13503	1432	50	5		5	RLN2	9	5300119	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08	602334	5300119	135913312	250	169568											
PTPRD	5789	broad.mit.edu	37	chr9	8436735	8436735	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acatttgaaaacaaatgaaaAtgatgctaactattccaaaa	4	6	0	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8436735	T	T	8436735	1	4	223	0	1	0	0	0	0	0	0	0	12907	116	4	5		5	PTPRD	9	8436735	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	3136616	8436735	132776696	251	169569											
MLLT3	4300	broad.mit.edu	37	chr9	20456695	20456695	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagattaatgggtaaagatTacataccttgtttttaaaat	6	3	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20456695	A	A	20456695	1	1	223	0	1	0	0	0	0	0	0	0	9721	1769	61	5		5	MLLT3	9	20456695	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	12019960	20456695	120756736	252	169570											
TLN1	7094	broad.mit.edu	37	chr9	35705476	35705476	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaccagagagggtgggggTgggacagccctagacactga	17	8	0	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35705476	A	A	35705476	1	1	223	0	1	0	0	0	0	0	0	0	16070	1711	59	5		5	TLN1	9	35705476	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	15248781	35705476	105507955	253	169571											
C9orf41	138199	broad.mit.edu	37	chr9	77599827	77599827	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattccattcttacctctAccttgaatccatactgcaga	3	12	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77599827	G	G	77599827	3	3	223	1	0	0	0	0	1	0	0	0	2508	391	14	5	113	5	C9orf41	9	77599827	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	41894351	77599827	63613604	254	169572											
WNK2	65268	broad.mit.edu	37	chr9	96024896	96024896	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactatgcgtggctgtgcccAcagggaggcgggagtccgca	17	11	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96024896	G	G	96024896	1	3	223	0	1	0	0	0	0	0	0	0	17505	174	6	5		5	WNK2	9	96024896	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	18425069	96024896	45188535	255	169573											
HIATL1	84641	broad.mit.edu	37	chr9	97191553	97191553	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagaaaaaatttttatgTggtttgtaatgaaccaaagt	9	2	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97191553	G	G	97191553	1	3	223	0	1	0	0	0	0	0	0	0	7165	1711	59	5		5	HIATL1	9	97191553	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	1166657	97191553	44021878	256	169574											
TSTD2	158427	broad.mit.edu	37	chr9	100388346	100388346	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggctaatagaagtctcaCtaagattctttagattatct	6	6	3	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100388346	A	A	100388346	1	1	223	0	1	0	0	0	0	0	0	0	16801	580	20	3		3	TSTD2	9	100388346	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	3196793	100388346	40825085	257	169575											
ERP44	23071	broad.mit.edu	37	chr9	102861021	102861021	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgggcgagggccggaGgccgttcgtgcgtttgtcga	17	13	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102861021	A	A	102861021	1	1	223	0	1	0	0	0	0	0	0	0	5285	1015	35	4		4	ERP44	9	102861021	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	2472675	102861021	38352410	258	169576											
OR13C3	138803	broad.mit.edu	37	chr9	107298956	107298956	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatctttgggtatccagaaaGacccagaagaagaaattctg	9	7	2	5			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107298956	A	A	107298956	3	1	223	1	0	0	0	0	1	0	0	0	11029	942	33	4	908	4	OR13C3	9	107298956	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4437935	107298956	33914475	259	169577											
OR13C5	138799	broad.mit.edu	37	chr9	107360999	107360999	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaaggtttgcttctcccCtccgaagagctaattttgaa	10	9	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107360999	A	A	107360999	3	1	223	1	0	0	0	0	1	0	0	0	11031	680	24	2	262	2	OR13C5	9	107360999	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	62043	107360999	33852432	260	169578											
COL27A1	85301	broad.mit.edu	37	chr9	117027203	117027203	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgctctgcttcccacaGggccctccaggaccccaggg	11	18	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117027203	T	T	117027203	5	4	223	1	0	0	0	0	0	0	1	0	3717	1014	35	2	3367	2	COL27A1	9	117027203	Splice_Site	SNP	G	TCGA-80-5611-01A-01D-1625-08	9666204	117027203	24186228	261	169579											
RAPGEF1	2889	broad.mit.edu	37	chr9	134459980	134459980	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtaacatgattatggaccgGaccctgcatggaccaaggga	12	9	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134459980	A	A	134459980	2	1	223	1	0	0	0	0	0	0	0	1	13151	1161	41	4		4	RAPGEF1	9	134459980	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	17432777	134459980	6753451	262	169580											
PRKCQ	5588	broad.mit.edu	37	chr10	6533790	6533790	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaactgaaagaaaggcagAaggtgaaatctgtgtattcc	12	5	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6533790	G	G	6533790	1	3	223	0	1	0	0	0	0	0	0	0	12621	261	9	5		5	PRKCQ	10	6533790	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08		6533790	129000957	263	169581											
ITIH5	80760	broad.mit.edu	37	chr10	7657947	7657947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttggcactcactcacctGccggagtttggttcccacca	10	15	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7657947	T	T	7657947	3	4	223	1	0	0	0	0	1	0	0	0	7977	1328	46	3	2046	3	ITIH5	10	7657947	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	1124157	7657947	127876800	264	169582											
ZEB1	6935	broad.mit.edu	37	chr10	31803458	31803458	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggctcacaaaaatgtcactCttagtagattggatgttctt	8	7	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31803458	A	A	31803458	1	1	223	0	1	0	0	0	0	0	0	0	17749	928	32	3		3	ZEB1	10	31803458	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	24145511	31803458	103731289	265	169583											
PARD3	56288	broad.mit.edu	37	chr10	34663923	34663923	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atttgcccactaaatctactCcatttacctaaaacaaaaca	1	12	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34663923	A	A	34663923	3	1	223	1	0	0	0	0	1	0	0	0	11537	855	30	3	2618	3	PARD3	10	34663923	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	2860465	34663923	100870824	266	169584											
BMS1	9790	broad.mit.edu	37	chr10	43291968	43291968	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aaatggacttgaacactggtCgaatgcgtcggaaagccatt	11	8	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43291968	G	G	43291968	3	3	223	1	0	0	0	0	1	0	0	0	1478	876	31	4	1310	4	BMS1	10	43291968	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	8628045	43291968	92242779	267	169585											
SAR1A	56681	broad.mit.edu	37	chr10	71920695	71920695	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgacacactgcttttaAaaggagctgggaggcacaaa	10	7	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71920695	C	C	71920695	1	2	223	0	1	0	0	0	0	0	0	0	13951	29	1	5		5	SAR1A	10	71920695	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	28628727	71920695	63614052	268	169586											
SEC24C	9632	broad.mit.edu	37	chr10	75520491	75520491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccttcggaccagcccggGgccctcagtctaattatgga	11	13	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75520491	T	T	75520491	3	4	223	1	0	0	0	0	1	0	0	0	14109	1232	43	2	889	2	SEC24C	10	75520491	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	3599796	75520491	60014256	269	169587											
ZMIZ1	57178	broad.mit.edu	37	chr10	81070971	81070971	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcgccactcgccttggccTggggctaggcctggcgccgg	17	15	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81070971	G	G	81070971	1	3	223	0	1	0	0	0	0	0	0	0	17822	1595	55	5		5	ZMIZ1	10	81070971	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	5550480	81070971	54463776	270	169588											
PLCE1	51196	broad.mit.edu	37	chr10	96018749	96018749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaagatactcaatgagagGtgttttccattcctcattca	6	8	3	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96018749	T	T	96018749	1	4	223	0	1	0	0	0	0	0	0	0	12129	1276	44	3		3	PLCE1	10	96018749	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	14947778	96018749	39515998	271	169589											
LBX1	10660	broad.mit.edu	37	chr10	102987012	102987012	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagcccagggcggcggaaGacccggggcgccgctcaatc	17	14	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102987012	T	T	102987012	1	4	223	0	1	0	0	0	0	0	0	0	8725	957	33	3		3	LBX1	10	102987012	3'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	6968263	102987012	32547735	272	169590											
BTRC	8945	broad.mit.edu	37	chr10	103174509	103174509	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaatgtgtgtgttcatgtGttggttttcaacaaagatgt	11	3	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103174509	T	T	103174509	1	4	223	0	1	0	0	0	0	0	0	0	1579	1392	48	3		3	BTRC	10	103174509	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	187497	103174509	32360238	273	169591											
ELOVL3	83401	broad.mit.edu	37	chr10	103988910	103988910	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acgatggaacacttattctgGtccttcatcttgtatatgac	7	9	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103988910	C	C	103988910	3	2	223	1	0	0	0	0	1	0	0	0	5117	1270	44	4	728	4	ELOVL3	10	103988910	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	814401	103988910	31545837	274	169592											
C10orf79	80217	broad.mit.edu	37	chr10	105974215	105974215	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatagcatttgatgaaaaaaAgttcatttgaatttcatgta	6	3	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105974215	C	C	105974215	1	2	223	0	1	0	0	0	0	0	0	0	1629	87	3	5		5	C10orf79	10	105974215	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	1985305	105974215	29560532	275	169593											
ACSL5	51703	broad.mit.edu	37	chr10	114168079	114168079	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaaagcaaaaCaaaacaagacaaaaaaccag	3	6	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114168079	A	A	114168079	1	1	223	0	1	0	0	0	0	0	0	0	180	493	17	3		3	ACSL5	10	114168079	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	8193864	114168079	21366668	276	169594											
PNLIPRP3	119548	broad.mit.edu	37	chr10	118199644	118199644	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatttgggggcaccttctcTgccttttaggatgttcaggg	13	8	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118199644	A	A	118199644	1	1	223	0	1	0	0	0	0	0	0	0	12247	1595	55	5		5	PNLIPRP3	10	118199644	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	4031565	118199644	17335103	277	169595											
DMBT1	1755	broad.mit.edu	37	chr10	124335998	124335998	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatcctataccgaggctccTggggcaccgtgtgtgatgac	13	11	0	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124335998	G	G	124335998	3	3	223	1	0	0	0	0	1	0	0	0	4617	1580	55	5	393	5	DMBT1	10	124335998	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	6136354	124335998	11198749	278	169596											
C10orf90	118611	broad.mit.edu	37	chr10	128191482	128191482	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatctctgagcattcaaTatttcaatatatatacagtt	3	6	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128191482	A	A	128191482	1	1	223	0	1	0	0	0	0	0	0	0	1634	1421	49	5		5	C10orf90	10	128191482	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	3855484	128191482	7343265	279	169597											
MUC2	4583	broad.mit.edu	37	chr11	1104063	1104063	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtactcggccaaggcccagGccctggaccacagctgctcc	12	17	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1104063	T	T	1104063	3	4	223	1	0	0	0	0	1	0	0	0	10069	1203	42	3	8440	3	MUC2	11	1104063	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08		1104063	133902453	280	169598											
DUSP8	1850	broad.mit.edu	37	chr11	1580240	1580240	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcagggcagcaggcttgCcctcgcagaggccggggaag	18	11	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1580240	T	T	1580240	3	4	223	1	0	0	0	0	1	0	0	0	4871	739	26	4	1477	4	DUSP8	11	1580240	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	476177	1580240	133426276	281	169599											
OR52E2	119678	broad.mit.edu	37	chr11	5080543	5080543	+	Frame_Shift_Del	DEL	A	-	-													ataagtgtgaagttgtggatAaaaaacatctgggtgaggca							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	5080543	-	-	5080543	7	5	223	1	0	1	0	1	0	0	0	0	11209	359	13	0	665	0	OR52E2	11	5080543	Frame_Shift_Del	DEL	A	TCGA-80-5611-01A-01D-1625-08	3500303	5080543	129925973	282	169600											
DNHD1	144132	broad.mit.edu	37	chr11	6523936	6523936	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcctccctctaaggtacTtgacctttttactctgcctt	6	13	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6523936	G	G	6523936	1	3	223	0	1	0	0	0	0	0	0	0	4708	1624	56	5		5	DNHD1	11	6523936	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	1443393	6523936	128482580	283	169601											
COPB1	1315	broad.mit.edu	37	chr11	14512211	14512211	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcaggagcatcaggtataAgatgttcaaaatttctttaa	8	5	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14512211	G	G	14512211	3	3	223	1	0	0	0	0	1	0	0	0	3760	72	3	5	2427	5	COPB1	11	14512211	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	7988275	14512211	120494305	284	169602											
PDE3B	5140	broad.mit.edu	37	chr11	14666084	14666084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcggctcctggtggctgCtggcgctgcccgcctgctgt	16	15	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14666084	A	A	14666084	3	1	223	1	0	0	0	0	1	0	0	0	11732	796	28	3	465	3	PDE3B	11	14666084	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	153873	14666084	120340432	285	169603											
CCDC34	91057	broad.mit.edu	37	chr11	27362859	27362859	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatagtgccaattttctatTagatactttttctaagatat	5	5	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27362859	C	C	27362859	1	2	223	0	1	0	0	0	0	0	0	0	2834	1769	61	5		5	CCDC34	11	27362859	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	12696775	27362859	107643657	286	169604											
PHF21A	51317	broad.mit.edu	37	chr11	45971884	45971884	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgccagttcctagtaggaCattagggaaagccagcccaa	10	10	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45971884	A	A	45971884	1	1	223	0	1	0	0	0	0	0	0	0	11928	493	17	3		3	PHF21A	11	45971884	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	18609025	45971884	89034632	287	169605											
C11orf49	79096	broad.mit.edu	37	chr11	47179382	47179382	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctgcccacccccagcactTgtcaaagaggccctcagcaa	8	17	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47179382	A	A	47179382	2	1	223	1	0	0	0	0	0	0	0	1	1657	1799	63	5		5	C11orf49	11	47179382	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08	1207498	47179382	87827134	288	169606											
CELF1	10658	broad.mit.edu	37	chr11	47510315	47510315	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaattttttgtatcctgtTaaaaacccaaagccctcacc	3	13	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47510315	G	G	47510315	1	3	223	0	1	0	0	0	0	0	0	0	3245	1769	61	5		5	CELF1	11	47510315	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	330933	47510315	87496201	289	169607											
AGBL2	79841	broad.mit.edu	37	chr11	47688628	47688628	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gccttttcctaggattgagtGaaaagagaatctttttcaat	8	6	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47688628	A	A	47688628	1	1	223	0	1	0	0	0	0	0	0	0	376	1305	45	4		4	AGBL2	11	47688628	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	178313	47688628	87317888	290	169608											
OR4A15	81328	broad.mit.edu	37	chr11	55135509	55135509	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctcacacagaaccctgaGgggcaaaaggttttatttgt	12	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135509	A	A	55135509	2	1	223	1	0	0	0	0	0	0	0	1	11134	991	35	4		4	OR4A15	11	55135509	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	7446881	55135509	79871007	291	169609											
OR5D14	219436	broad.mit.edu	37	chr11	55563785	55563785	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccacctgacttctatcaccAtcttccatgggaccatcctt	4	17	3	1	rs149902192		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55563785	T	T	55563785	3	4	223	1	0	0	0	0	1	0	0	0	11249	217	8	5	756	5	OR5D14	11	55563785	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	428276	55563785	79442731	292	169610											
OR5B17	219965	broad.mit.edu	37	chr11	58125914	58125914	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gataggaaatcaaggtaacaAgaagtgcaaaaaagacatta	9	4	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58125914	G	G	58125914	3	3	223	1	0	0	0	0	1	0	0	0	11243	72	3	5	317	5	OR5B17	11	58125914	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	2562129	58125914	76880602	293	169611											
GLYATL1	92292	broad.mit.edu	37	chr11	58711090	58711090	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaacacggaaggtacctGcaggatccaattgtgtccat	11	9	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58711090	A	A	58711090	1	1	223	0	1	0	0	0	0	0	0	0	6544	1306	46	4		4	GLYATL1	11	58711090	5'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	585176	58711090	76295426	294	169612											
MS4A8B	83661	broad.mit.edu	37	chr11	60482473	60482473	+	Intron	DEL	C	-	-													cagtcccgtgctcctgtcctCcccatctgctctgcctacag							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	60482473	-	-	60482473	6	5	223	0	1	1	0	1	0	0	0	0	9961	870	30	0		0	MS4A8B	11	60482473	Intron	DEL	C	TCGA-80-5611-01A-01D-1625-08	1771383	60482473	74524043	295	169613											
SART1	9092	broad.mit.edu	37	chr11	65729186	65729186	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcggctgccgagcgaccCggaagtattcccattttgcg	12	13	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65729186	A	A	65729186	1	1	223	0	1	0	0	0	0	0	0	0	13958	667	23	1		1	SART1	11	65729186	5'UTR	SNP	C	TCGA-80-5611-01A-01D-1625-08	5246713	65729186	69277330	296	169614											
STARD10	10809	broad.mit.edu	37	chr11	72465899	72465899	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagcggccgccgccccaGggctcgcccggtcctgtctc	14	19	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72465899	A	A	72465899	1	1	223	0	1	0	0	0	0	0	0	0	15373	1015	35	4		4	STARD10	11	72465899	3'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	6736713	72465899	62540617	297	169615											
MYO7A	4647	broad.mit.edu	37	chr11	76924924	76924924	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatatcctcaccactcatcCcttcaccaagatctccaact	3	17	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76924924	T	T	76924924	3	4	223	1	0	0	0	0	1	0	0	0	10176	623	22	4	6678	4	MYO7A	11	76924924	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	4459025	76924924	58081592	298	169616											
ODZ4	26011	broad.mit.edu	37	chr11	78413148	78413148	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggccccagcaacgagtgAgatctctccactagtggtga	14	11	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78413148	G	G	78413148	3	3	223	1	0	0	0	0	1	0	0	0	10932	304	11	5	3827	5	ODZ4	11	78413148	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	1488224	78413148	56593368	299	169617											
UBTFL1	642623	broad.mit.edu	37	chr11	89819902	89819902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacgctggcagcgcatccCgcagagccagaaggatcatt	12	13	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89819902	A	A	89819902	3	1	223	1	0	0	0	0	1	0	0	0	17036	652	23	1	787	1	UBTFL1	11	89819902	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	11406754	89819902	45186614	300	169618											
HEPHL1	341208	broad.mit.edu	37	chr11	93822027	93822027	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacccttctgagcagcggtaCgggatgataagaacttttta	11	8	1	3	rs113614754	by1000genomes	TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93822027	A	A	93822027	4	1	223	1	0	0	0	0	0	1	0	0	7122	547	19	3	2233	3	HEPHL1	11	93822027	Nonsense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	4002125	93822027	41184489	301	169619											
DYNC2H1	79659	broad.mit.edu	37	chr11	103060406	103060406	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccattttttttagttaccCagaaagagagcagttacaaa	7	7	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103060406	G	G	103060406	3	3	223	1	0	0	0	0	1	0	0	0	4886	594	21	4	7476	4	DYNC2H1	11	103060406	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	9238379	103060406	31946110	302	169620											
GUCY1A2	2977	broad.mit.edu	37	chr11	106558443	106558443	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggaagctcttcacgagaCcgcggaatgaatgtgaaact	11	9	3	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106558443	A	A	106558443	2	1	223	1	0	0	0	0	0	0	0	1	6958	494	18	3		3	GUCY1A2	11	106558443	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	3498037	106558443	28448073	303	169621											
ELMOD1	55531	broad.mit.edu	37	chr11	107535706	107535707	+	Intron	INS	-	T	T													attttgaatgtgattaaggaINStttttttttctcctgcattc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107535707	T	T	107535706	6	5	223	0	1	1	1	0	0	0	0	0	5110	348	12	0		0	ELMOD1	11	107535706	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	977263	107535706	27470810	304	169622											
DLAT	1737	broad.mit.edu	37	chr11	111904068	111904068	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaccacataagtctgccaGacttttattatgtagaagtc	7	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111904068	C	C	111904068	1	2	223	0	1	0	0	0	0	0	0	0	4589	957	33	4		4	DLAT	11	111904068	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	4368362	111904068	23102448	305	169623											
HTR3B	9177	broad.mit.edu	37	chr11	113802055	113802055	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttactgctgaattggccttTgatttattgacattctaaga	7	7	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113802055	C	C	113802055	1	2	223	0	1	0	0	0	0	0	0	0	7515	1827	63	5		5	HTR3B	11	113802055	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	1897987	113802055	21204461	306	169624											
OR4D5	219875	broad.mit.edu	37	chr11	123810475	123810475	+	Frame_Shift_Del	DEL	C	-	-													tattgtggtcatagtgacctCcgacccacacctgcacacaa							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	123810475	-	-	123810475	7	5	223	1	0	1	0	1	0	0	0	0	11151	855	30	0	154	0	OR4D5	11	123810475	Frame_Shift_Del	DEL	C	TCGA-80-5611-01A-01D-1625-08	10008420	123810475	11196041	307	169625											
NCAPD3	23310	broad.mit.edu	37	chr11	134054882	134054882	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtcctaaggtgtttgaatTgggattctgctgactagaga	12	5	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134054882	G	G	134054882	3	3	223	1	0	0	0	0	1	0	0	0	10301	1812	63	5	2317	5	NCAPD3	11	134054882	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	10244407	134054882	951634	308	169626											
IQSEC3	440073	broad.mit.edu	37	chr12	272870	272870	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagggtccctgaagtgggCaggaaaggacgcccagagct	17	10	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	272870	G	G	272870	1	3	223	0	1	0	0	0	0	0	0	0	7889	725	25	4		4	IQSEC3	12	272870	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08		272870	133579025	309	169627											
SCNN1A	6337	broad.mit.edu	37	chr12	6471155	6471155	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggccctgcccatgcagggcGtgaggctgacccagggaagc	17	13	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6471155	C	C	6471155	1	2	223	0	1	0	0	0	0	0	0	0	14040	1160	40	4		4	SCNN1A	12	6471155	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	6198285	6471155	127380740	310	169628											
CNTN1	1272	broad.mit.edu	37	chr12	41463902	41463902	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaaccctgggatgaccAcaattccttccaatttctgc	5	15	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41463902	G	G	41463902	1	3	223	0	1	0	0	0	0	0	0	0	3672	174	6	5		5	CNTN1	12	41463902	3'UTR	SNP	A	TCGA-80-5611-01A-01D-1625-08	34992747	41463902	92387993	311	169629											
VDR	7421	broad.mit.edu	37	chr12	48272943	48272943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagagccagagtcagtgCcagggccagctggcatcctt	14	12	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48272943	A	A	48272943	1	1	223	0	1	0	0	0	0	0	0	0	17276	754	26	3		3	VDR	12	48272943	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	6809041	48272943	85578952	312	169630											
ANKRD33	341405	broad.mit.edu	37	chr12	52281933	52281933	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccccagtcccagctgcttGatccggctcagccccgaggt	12	17	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52281933	C	C	52281933	1	2	223	0	1	0	0	0	0	0	0	0	661	1305	45	4		4	ANKRD33	12	52281933	5'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	4008990	52281933	81569962	313	169631											
KRT8	3856	broad.mit.edu	37	chr12	53294507	53294507	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctgagctgggtttccaCacccaaccccaaccaagggg	11	15	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53294507	A	A	53294507	1	1	223	0	1	0	0	0	0	0	0	0	8564	493	17	3		3	KRT8	12	53294507	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1012574	53294507	80557388	314	169632											
ZC3H10	84872	broad.mit.edu	37	chr12	56514815	56514815	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggagccaagtgcaagttcCgtcacctgcaacgggatttt	12	10	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56514815	T	T	56514815	3	4	223	1	0	0	0	0	1	0	0	0	17685	652	23	4	471	4	ZC3H10	12	56514815	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	3220308	56514815	77337080	315	169633											
AVIL	10677	broad.mit.edu	37	chr12	58201289	58201289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctgcaatggtgagaggCcatgaaggacccatgctccc	13	13	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58201289	A	A	58201289	1	1	223	0	1	0	0	0	0	0	0	0	1232	754	26	3		3	AVIL	12	58201289	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1686474	58201289	75650606	316	169634											
TMEM5	10329	broad.mit.edu	37	chr12	64202478	64202478	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcctcaggaaacaaatgAaagtcttaagaattaccaag	8	8	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64202478	T	T	64202478	3	4	223	1	0	0	0	0	1	0	0	0	16297	246	9	5	960	5	TMEM5	12	64202478	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	6001189	64202478	69649417	317	169635											
RAB3IP	117177	broad.mit.edu	37	chr12	70149292	70149292	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaactcaagagcagactaCctcaccaagtgtcatctacc	7	13	4	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70149292	T	T	70149292	3	4	223	1	0	0	0	0	1	0	0	0	13046	507	18	4	158	4	RAB3IP	12	70149292	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	5946814	70149292	63702603	318	169636											
ZFC3H1	196441	broad.mit.edu	37	chr12	72050619	72050619	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaagtagttactacttTagaggaagaagagtcattac	8	5	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72050619	C	C	72050619	1	2	223	0	1	0	0	0	0	0	0	0	17759	1769	61	5		5	ZFC3H1	12	72050619	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	1901327	72050619	61801276	319	169637											
TBC1D15	64786	broad.mit.edu	37	chr12	72311626	72311626	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaattgtagagtaatgcAtagaaaaaaatgtaaagaac	8	3	0	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72311626	G	G	72311626	1	3	223	0	1	0	0	0	0	0	0	0	15723	232	8	5		5	TBC1D15	12	72311626	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	261007	72311626	61540269	320	169638											
ANO4	121601	broad.mit.edu	37	chr12	101514344	101514344	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attcactggtgccctatggcTacacactgcagttttggcat	9	11	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101514344	A	A	101514344	3	1	223	1	0	0	0	0	1	0	0	0	699	1522	53	5	2606	5	ANO4	12	101514344	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	29202718	101514344	32337551	321	169639											
TRPV4	59341	broad.mit.edu	37	chr12	110226574	110226574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcacacccacagagagGtggagggtgtcattctcatt	13	9	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110226574	T	T	110226574	1	4	223	0	1	0	0	0	0	0	0	0	16723	1276	44	3		3	TRPV4	12	110226574	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	8712230	110226574	23625321	322	169640											
ALDH2	217	broad.mit.edu	37	chr12	112223066	112223066	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgctgaccttgttttcttCtcaggccttggagaccctgg	10	12	3	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112223066	G	G	112223066	1	3	223	0	1	0	0	0	0	0	0	0	496	928	32	4		4	ALDH2	12	112223066	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1996492	112223066	21628829	323	169641											
TMEM120B	144404	broad.mit.edu	37	chr12	122212560	122212560	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcttccctcctctccAcagaagggttccagtcctgg	7	15	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122212560	T	T	122212560	1	4	223	0	1	0	0	0	0	0	0	0	16157	174	6	5		5	TMEM120B	12	122212560	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	9989494	122212560	11639335	324	169642											
SBNO1	55206	broad.mit.edu	37	chr12	123801854	123801854	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatttttagctctcctatctGcttgtaatgaaatacccgag	7	9	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123801854	C	C	123801854	3	2	223	1	0	0	0	0	1	0	0	0	13974	1319	46	4	1380	4	SBNO1	12	123801854	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	1589294	123801854	10050041	325	169643											
SCARB1	949	broad.mit.edu	37	chr12	125279717	125279717	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctcaatgagcaatgcagCcccagctcccagtccccact	6	18	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125279717	T	T	125279717	1	4	223	0	1	0	0	0	0	0	0	0	13993	754	26	4		4	SCARB1	12	125279717	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1477863	125279717	8572178	326	169644											
TPTE2	93492	broad.mit.edu	37	chr13	20138183	20138183	+	5'Flank	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gttgtccagttggaagatggGagattgcctgatgactttca	13	6	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20138183	A	A	20138183	1	1	223	0	1	0	0	0	0	0	0	0	16555	1189	41	4		4	TPTE2	13	20138183	5'Flank	SNP	G	TCGA-80-5611-01A-01D-1625-08		20138183	95031695	327	169645											
ATP12A	479	broad.mit.edu	37	chr13	25276056	25276056	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcattacccgtgggccttctCgttgtctttgctctaggtta	9	11	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25276056	T	T	25276056	1	4	223	0	1	0	0	0	0	0	0	0	1126	899	31	4		4	ATP12A	13	25276056	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	5137873	25276056	89893822	328	169646											
FREM2	341640	broad.mit.edu	37	chr13	39450532	39450532	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaacaggtgtggcttataGaattactatcttatgacttg	8	7	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39450532	C	C	39450532	1	2	223	0	1	0	0	0	0	0	0	0	6105	957	33	4		4	FREM2	13	39450532	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	14174476	39450532	75719346	329	169647											
LHFP	10186	broad.mit.edu	37	chr13	39917907	39917907	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcccccacaaatctcctaCaatccttccttcctatatca	0	17	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39917907	A	A	39917907	1	1	223	0	1	0	0	0	0	0	0	0	8835	493	17	3		3	LHFP	13	39917907	3'UTR	SNP	C	TCGA-80-5611-01A-01D-1625-08	467375	39917907	75251971	330	169648											
SLC25A15	10166	broad.mit.edu	37	chr13	41379223	41379223	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaaaggaatgaagaaactGaggggtaactgtctgcttgt	13	6	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41379223	T	T	41379223	1	4	223	0	1	0	0	0	0	0	0	0	14591	1305	45	3		3	SLC25A15	13	41379223	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	1461316	41379223	73790655	331	169649											
ELF1	1997	broad.mit.edu	37	chr13	41518040	41518040	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tagtggctggggaatctggtCgtggtggtttagtttttctt	15	4	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41518040	A	A	41518040	3	1	223	1	0	0	0	0	1	0	0	0	5095	884	31	3	1324	3	ELF1	13	41518040	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	138817	41518040	73651838	332	169650											
KIAA0564	23078	broad.mit.edu	37	chr13	42440148	42440148	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgacgcacaaggttgacTtaatagcctggtcccggctg	12	11	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42440148	C	C	42440148	3	2	223	1	0	0	0	0	1	0	0	0	8255	1609	56	5	4624	5	KIAA0564	13	42440148	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	922108	42440148	72729730	333	169651											
AKAP11	11215	broad.mit.edu	37	chr13	42891625	42891625	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agagtattgagagttaaattGatgagttttactttatattg	9	1	0	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42891625	A	A	42891625	1	1	223	0	1	0	0	0	0	0	0	0	447	1305	45	4		4	AKAP11	13	42891625	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	451477	42891625	72278253	334	169652											
EDNRB	1910	broad.mit.edu	37	chr13	78472507	78472507	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actcattatatgttaacatcAgtcacctttcccaactcttc	2	13	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78472507	G	G	78472507	1	3	223	0	1	0	0	0	0	0	0	0	4960	203	7	5		5	EDNRB	13	78472507	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	35580882	78472507	36697371	335	169653											
UBAC2	337867	broad.mit.edu	37	chr13	99992548	99992548	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataatactacatttaaacAatcacattggacgtttttct	3	7	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99992548	G	G	99992548	1	3	223	0	1	0	0	0	0	0	0	0	16961	145	5	5		5	UBAC2	13	99992548	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	21520041	99992548	15177330	336	169654											
TM9SF2	9375	broad.mit.edu	37	chr13	100190023	100190023	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaagagatacattttacAtcttcaaccatgttgacatc	5	8	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100190023	G	G	100190023	3	3	223	1	0	0	0	0	1	0	0	0	16101	217	8	5	644	5	TM9SF2	13	100190023	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	197475	100190023	14979855	337	169655											
NALCN	259232	broad.mit.edu	37	chr13	101710459	101710459	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctttttaaccctgcgctctCctccttttactataagaaag	4	12	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101710459	T	T	101710459	1	4	223	0	1	0	0	0	0	0	0	0	10242	870	30	4		4	NALCN	13	101710459	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1520436	101710459	13459419	338	169656											
F7	2155	broad.mit.edu	37	chr13	113773001	113773001	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccctggagctcatggtcctCaacgtgccccggctgatgac	12	15	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113773001	A	A	113773001	2	1	223	1	0	0	0	0	0	0	0	1	5392	813	29	3		3	F7	13	113773001	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	12062542	113773001	1396877	339	169657											
TMEM55B	90809	broad.mit.edu	37	chr14	20927239	20927239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcactttagctcatccaTatcttaaaacaaaacaaact	2	10	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20927239	C	C	20927239	1	2	223	0	1	0	0	0	0	0	0	0	16305	1421	49	5		5	TMEM55B	14	20927239	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08		20927239	86422301	340	169658											
RPGRIP1	57096	broad.mit.edu	37	chr14	21756020	21756020	+	5'Flank	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	catgaaagtgctgagaaattCctgctacaacttatgtacac	7	9	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21756020	T	T	21756020	1	4	223	0	1	0	0	0	0	0	0	0	13660	870	30	4		4	RPGRIP1	14	21756020	5'Flank	SNP	C	TCGA-80-5611-01A-01D-1625-08	828781	21756020	85593520	341	169659											
LRRC16B	90668	broad.mit.edu	37	chr14	24530760	24530760	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttatgccctgtggccatgCgggtggccgagggacacaac	15	11	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24530760	T	T	24530760	3	4	223	1	0	0	0	0	1	0	0	0	9059	759	27	4	2465	4	LRRC16B	14	24530760	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	2774740	24530760	82818780	342	169660											
ADCY4	196883	broad.mit.edu	37	chr14	24799281	24799281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagccctgcctgtgagaCaccccagattctcacaaaga	7	16	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24799281	A	A	24799281	1	1	223	0	1	0	0	0	0	0	0	0	296	493	17	3		3	ADCY4	14	24799281	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	268521	24799281	82550259	343	169661											
FSCB	84075	broad.mit.edu	37	chr14	44975731	44975732	+	Nonsense_Mutation	DNP	CC	AG	AG													actaaagtatgtctgttgttCcttgtccactttttctacag							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	44975732	AG	AG	44975731	4	1	223	1	0	0	0	0	0	1	0	0	6126	864	30	3	2021	3	FSCB	14	44975731	Nonsense_Mutation	DNP	CC	TCGA-80-5611-01A-01D-1625-08	20176450	44975731	62373809	344	169662											
WDHD1	11169	broad.mit.edu	37	chr14	55429138	55429138	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggccttaagagttaaggTgtatttgcgtagatgtgtca	13	4	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55429138	C	C	55429138	1	2	223	0	1	0	0	0	0	0	0	0	17398	1711	59	5		5	WDHD1	14	55429138	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	10453407	55429138	51920402	345	169663											
DLGAP5	9787	broad.mit.edu	37	chr14	55655984	55655984	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcatttcctgtcccacttCagggccttctgaaataaaaa	6	11	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55655984	A	A	55655984	1	1	223	0	1	0	0	0	0	0	0	0	4603	841	29	3		3	DLGAP5	14	55655984	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	226846	55655984	51693556	346	169664											
OTX2	5015	broad.mit.edu	37	chr14	57268456	57268456	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggttctacaggtcttcaCaaaacctggaatttccacga	8	10	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57268456	T	T	57268456	2	4	223	1	0	0	0	0	0	0	0	1	11415	477	17	4		4	OTX2	14	57268456	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	1612472	57268456	50081084	347	169665											
C14orf135	64430	broad.mit.edu	37	chr14	60574588	60574588	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacagcagcactttcaggtGgattaatgctttttactgca	8	8	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60574588	A	A	60574588	1	1	223	0	1	0	0	0	0	0	0	0	1758	1363	47	4		4	C14orf135	14	60574588	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	3306132	60574588	46774952	348	169666											
PLEKHG3	26030	broad.mit.edu	37	chr14	65208725	65208725	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccggagggagccctgggaaGgggccaggccagggccaggc	20	12	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65208725	A	A	65208725	2	1	223	1	0	0	0	0	0	0	0	1	12165	991	35	4		4	PLEKHG3	14	65208725	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	4634137	65208725	42140815	349	169667											
COQ6	51004	broad.mit.edu	37	chr14	74428033	74428033	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agttctgtttcctcttgggtTgggacatgctgctgagtacg	13	8	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74428033	A	A	74428033	4	1	223	1	0	0	0	0	0	1	0	0	3781	1821	63	5	1083	5	COQ6	14	74428033	Nonsense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	9219308	74428033	32921507	350	169668											
NGB	58157	broad.mit.edu	37	chr14	77732490	77732490	+	3'UTR	DEL	C	-	-													ctggaagctcagccatctcaCccccgccttggcctgcactc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77732490	-	-	77732490	6	5	223	0	1	1	0	1	0	0	0	0	10487	522	18	0		0	NGB	14	77732490	3'UTR	DEL	C	TCGA-80-5611-01A-01D-1625-08	3304457	77732490	29617050	351	169669											
NRXN3	9369	broad.mit.edu	37	chr14	79423666	79423666	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgggtggtgcggagaggaaAaagccttaagttaaccgtgg	16	6	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79423666	G	G	79423666	3	3	223	1	0	0	0	0	1	0	0	0	10762	14	1	5	1260	5	NRXN3	14	79423666	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	1691176	79423666	27925874	352	169670											
DIO2	1734	broad.mit.edu	37	chr14	80671943	80671943	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacaggggactctcttattAcctgcagtaaattttcttgg	8	9	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80671943	T	T	80671943	1	4	223	0	1	0	0	0	0	0	0	0	4565	406	14	5		5	DIO2	14	80671943	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	1248277	80671943	26677597	353	169671											
TRIP11	9321	broad.mit.edu	37	chr14	92441645	92441645	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggactctatgaaaataaagGcagaaacagctcaagtgaac	9	7	2	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92441645	A	A	92441645	1	1	223	0	1	0	0	0	0	0	0	0	16680	1218	42	4		4	TRIP11	14	92441645	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	11769702	92441645	14907895	354	169672											
HHIPL1	84439	broad.mit.edu	37	chr14	100118840	100118840	+	Frame_Shift_Del	DEL	A	-	-													gccacgtggtagccgatgccAagggctgcctgcagctgtgc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	100118840	-	-	100118840	7	5	223	1	0	1	0	1	0	0	0	0	7160	131	5	0	541	0	HHIPL1	14	100118840	Frame_Shift_Del	DEL	A	TCGA-80-5611-01A-01D-1625-08	7677195	100118840	7230700	355	169673											
MARK3	4140	broad.mit.edu	37	chr14	103931921	103931921	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctattgttagatgccgatAtgaacattaaaatagcagat	7	5	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103931921	G	G	103931921	3	3	223	1	0	0	0	0	1	0	0	0	9406	449	16	5	598	5	MARK3	14	103931921	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	3813081	103931921	3417619	356	169674											
AHNAK2	113146	broad.mit.edu	37	chr14	105410751	105410751	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcagtggtcttcaggtcCccctgcatggaggggagact	15	10	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105410751	A	A	105410751	2	1	223	1	0	0	0	0	0	0	0	1	415	610	22	2		2	AHNAK2	14	105410751	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	1478830	105410751	1938789	357	169675											
TGM7	116179	broad.mit.edu	37	chr15	43585154	43585154	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agctctgacggcttgggtccTgtgtaggagagaatgacccc	14	10	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43585154	A	A	43585154	5	1	223	1	0	0	0	0	0	0	1	0	15958	1594	55	5	1984	5	TGM7	15	43585154	Splice_Site	SNP	T	TCGA-80-5611-01A-01D-1625-08		43585154	58946238	358	169676											
GABPB1	2553	broad.mit.edu	37	chr15	50593534	50593534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagtgtcaggactctctGggtttgtgttgatttggttc	12	7	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50593534	T	T	50593534	3	4	223	1	0	0	0	0	1	0	0	0	6218	1348	47	2	752	2	GABPB1	15	50593534	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	7008380	50593534	51937858	359	169677											
UNC13C	440279	broad.mit.edu	37	chr15	54630576	54630576	+	Frame_Shift_Del	DEL	C	-	-													caggttctggagctgcaaagCcccccaaaagcgagcatggt							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54630576	-	-	54630576	7	5	223	1	0	1	0	1	0	0	0	0	17112	738	26	0	4660	0	UNC13C	15	54630576	Frame_Shift_Del	DEL	C	TCGA-80-5611-01A-01D-1625-08	4037042	54630576	47900816	360	169678											
PIAS1	8554	broad.mit.edu	37	chr15	68378698	68378698	+	Frame_Shift_Del	DEL	G	-	-													aagtactgttgggctacgccGggagaaacaagcacggacgc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	68378698	-	-	68378698	7	5	223	1	0	1	0	1	0	0	0	0	11970	1116	39	0	85	0	PIAS1	15	68378698	Frame_Shift_Del	DEL	G	TCGA-80-5611-01A-01D-1625-08	13748122	68378698	34152694	361	169679											
EFTUD1	79631	broad.mit.edu	37	chr15	82512739	82512739	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagggcctatcagcctctcTctaataatgctgtgtcccaa	8	12	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82512739	A	A	82512739	1	1	223	0	1	0	0	0	0	0	0	0	5000	1566	54	5		5	EFTUD1	15	82512739	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	14134041	82512739	20018653	362	169680											
AP3B2	8120	broad.mit.edu	37	chr15	83360460	83360460	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaaaaaataaagaaaaaaTtcccatcacctgtctcagta	3	10	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83360460	A	A	83360460	1	1	223	0	1	0	0	0	0	0	0	0	747	1508	52	5		5	AP3B2	15	83360460	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	847721	83360460	19170932	363	169681											
SLC28A1	9154	broad.mit.edu	37	chr15	85452051	85452051	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgactcagggtcccagaGgcctttagcagccaccgccc	11	16	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85452051	A	A	85452051	1	1	223	0	1	0	0	0	0	0	0	0	14645	1015	35	4		4	SLC28A1	15	85452051	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	2091591	85452051	17079341	364	169682											
ACAN	176	broad.mit.edu	37	chr15	89386810	89386810	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcctgggcgtgaggaccGtctacgtgcatgccaaccag	12	14	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89386810	A	A	89386810	3	1	223	1	0	0	0	0	1	0	0	0	117	1145	40	4	1000	4	ACAN	15	89386810	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	3934759	89386810	13144582	365	169683											
RAB11FIP3	9727	broad.mit.edu	37	chr16	570480	570480	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaccgcaacctgaaggagCagaacgaggagctgaacggg	14	10	0	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	570480	T	T	570480	4	4	223	1	0	0	0	0	0	1	0	0	13003	711	25	4	2107	4	RAB11FIP3	16	570480	Nonsense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08		570480	89784273	366	169684											
CACNA1H	8912	broad.mit.edu	37	chr16	1270924	1270924	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacctcacagtcccccagtGtcctctggagaaaccagggt	10	14	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1270924	A	A	1270924	3	1	223	1	0	0	0	0	1	0	0	0	2571	1377	48	4	7126	4	CACNA1H	16	1270924	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	700444	1270924	89083829	367	169685											
CLCN7	1186	broad.mit.edu	37	chr16	1510965	1510965	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcctgcagggcgcggtcAgggcgagggtcaggcagggc	21	10	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1510965	C	C	1510965	1	2	223	0	1	0	0	0	0	0	0	0	3499	203	7	5		5	CLCN7	16	1510965	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	240041	1510965	88843788	368	169686											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1810016	1810016	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacagcttctggaaaccaAgtaagagtgcccttctcctg	8	13	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1810016	C	C	1810016	3	2	223	1	0	0	0	0	1	0	0	0	9378	86	3	5	1359	5	MAPK8IP3	16	1810016	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	299051	1810016	88544737	369	169687											
KCTD5	54442	broad.mit.edu	37	chr16	2757277	2757277	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcagcccaagtcctcattTtatgcatttggtgtttttca	6	11	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2757277	G	G	2757277	1	3	223	0	1	0	0	0	0	0	0	0	8182	1856	64	5		5	KCTD5	16	2757277	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	947261	2757277	87597476	370	169688											
GP2	2813	broad.mit.edu	37	chr16	20325935	20325935	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagaattgaaaagagaaagGagagttgggaaagctgtggg	17	2	0	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20325935	A	A	20325935	1	1	223	0	1	0	0	0	0	0	0	0	6647	1189	41	4		4	GP2	16	20325935	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	17568658	20325935	70028818	371	169689											
TAOK2	9344	broad.mit.edu	37	chr16	29997472	29997472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccttgatactgaccaGgccctgggccctgtgtttct	9	14	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29997472	T	T	29997472	1	4	223	0	1	0	0	0	0	0	0	0	15667	1015	35	2		2	TAOK2	16	29997472	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	9671537	29997472	60357281	372	169690											
SRCAP	10847	broad.mit.edu	37	chr16	30732065	30732065	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtacctaagcaagaaggcCggacagtggtggtggtgaac	15	8	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30732065	T	T	30732065	3	4	223	1	0	0	0	0	1	0	0	0	15253	643	23	4	3089	4	SRCAP	16	30732065	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	734593	30732065	59622688	373	169691											
PHKG2	5261	broad.mit.edu	37	chr16	30767768	30767768	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcagatcctgatgttacGcatgatcatggagggccagt	14	9	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30767768	T	T	30767768	3	4	223	1	0	0	0	0	1	0	0	0	11942	1087	38	3	754	3	PHKG2	16	30767768	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	35703	30767768	59586985	374	169692											
MMP2	4313	broad.mit.edu	37	chr16	55523613	55523613	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccccctgtgtcttccccTtcactttcctgggcaacaaa	7	16	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55523613	G	G	55523613	3	3	223	1	0	0	0	0	1	0	0	0	9751	1609	56	5	1090	5	MMP2	16	55523613	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	24755845	55523613	34831140	375	169693											
MMP2	4313	broad.mit.edu	37	chr16	55523626	55523626	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttccccttcactttcctggGcaacaaatatgagagctgca	7	13	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55523626	C	C	55523626	3	2	223	1	0	0	0	0	1	0	0	0	9751	1203	42	4	1103	4	MMP2	16	55523626	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	13	55523626	34831127	376	169694											
BBS2	583	broad.mit.edu	37	chr16	56553688	56553688	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtggcggccgccaggcaCgggtgagtcccgtcgtagcg	19	12	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56553688	A	A	56553688	2	1	223	1	0	0	0	0	0	0	0	1	1343	523	19	3		3	BBS2	16	56553688	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	1030062	56553688	33801065	377	169695											
CDH16	1014	broad.mit.edu	37	chr16	66949248	66949248	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctgtgcctggctcatccCggtctgaagcctcaaggaag	13	12	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66949248	T	T	66949248	3	4	223	1	0	0	0	0	1	0	0	0	3131	652	23	4	2083	4	CDH16	16	66949248	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	10395560	66949248	23405505	378	169696											
ATP6V0D1	9114	broad.mit.edu	37	chr16	67515078	67515078	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgacgctgcgtcctcagcGggctgtcaagtgcgtcaggt	15	12	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67515078	C	C	67515078	1	2	223	0	1	0	0	0	0	0	0	0	1177	1131	39	4		4	ATP6V0D1	16	67515078	5'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	565830	67515078	22839675	379	169697											
KARS	3735	broad.mit.edu	37	chr16	75665654	75665654	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcataggccatgtagaactCacaggtggtgaactcaggat	12	8	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75665654	T	T	75665654	3	4	223	1	0	0	0	0	1	0	0	0	8050	835	29	4	806	4	KARS	16	75665654	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	8150576	75665654	14689099	380	169698											
JPH3	57338	broad.mit.edu	37	chr16	87678370	87678370	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgagtggaagaacgacaaaCgctccggcttcggcgtgagc	15	11	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87678370	T	T	87678370	3	4	223	1	0	0	0	0	1	0	0	0	8032	536	19	4	895	4	JPH3	16	87678370	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	12012716	87678370	2676383	381	169699											
CBFA2T3	863	broad.mit.edu	37	chr16	88945809	88945809	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcgctttgcgctccgcgtCcgacacggctttctgcagct	12	15	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88945809	T	T	88945809	3	4	223	1	0	0	0	0	1	0	0	0	2724	855	30	4	438	4	CBFA2T3	16	88945809	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	1267439	88945809	1408944	382	169700											
DPEP1	1800	broad.mit.edu	37	chr16	89703427	89703427	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaacaatgcatctcctcacgTgggacctcagtgtccttgtc	9	13	3	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89703427	A	A	89703427	1	1	223	0	1	0	0	0	0	0	0	0	4753	1711	59	5		5	DPEP1	16	89703427	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	757618	89703427	651326	383	169701											
P2RX5	5026	broad.mit.edu	37	chr17	3592814	3592814	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatatcctggaagtcgctcCcggcccagcggatcacggag	12	14	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3592814	A	A	3592814	3	1	223	1	0	0	0	0	1	0	0	0	11437	623	22	2	567	2	P2RX5	17	3592814	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08		3592814	77602396	384	169702											
XAF1	54739	broad.mit.edu	37	chr17	6665594	6665594	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaattttctaatggtgccaAtagttcatccacattctgaa	6	8	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6665594	G	G	6665594	1	3	223	0	1	0	0	0	0	0	0	0	17546	116	4	5		5	XAF1	17	6665594	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	3072780	6665594	74529616	385	169703											
ULK2	9706	broad.mit.edu	37	chr17	19720040	19720040	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agattaagaaatacaatgtgTacaagtagaaaagattctca	7	4	1	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19720040	C	C	19720040	1	2	223	0	1	0	0	0	0	0	0	0	17102	1653	57	5		5	ULK2	17	19720040	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	13054446	19720040	61475170	386	169704											
NOS2	4843	broad.mit.edu	37	chr17	26084384	26084384	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagcgcttctggctctttTaggtaaaaacagagagcaac	10	8	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26084384	C	C	26084384	1	2	223	0	1	0	0	0	0	0	0	0	10638	1769	61	5		5	NOS2	17	26084384	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	6364344	26084384	55110826	387	169705											
NEK8	284086	broad.mit.edu	37	chr17	27062387	27062387	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagggctttcgaggctGcggtgagtgtatgcaccctc	14	10	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27062387	A	A	27062387	3	1	223	1	0	0	0	0	1	0	0	0	10425	1319	46	4	630	4	NEK8	17	27062387	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	978003	27062387	54132823	388	169706											
PHF12	57649	broad.mit.edu	37	chr17	27240044	27240044	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagccgatgtcctctagggcTggggactggtggggtggaga	19	8	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27240044	A	A	27240044	2	1	223	1	0	0	0	0	0	0	0	1	11918	1567	55	5		5	PHF12	17	27240044	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08	177657	27240044	53955166	389	169707											
MYO18A	399687	broad.mit.edu	37	chr17	27425147	27425147	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttccttcatctccttctcAgcccggagcctctctgctgt	7	16	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27425147	T	T	27425147	2	4	223	1	0	0	0	0	0	0	0	1	10159	175	7	5		5	MYO18A	17	27425147	Silent	SNP	A	TCGA-80-5611-01A-01D-1625-08	185103	27425147	53770063	390	169708											
C17orf42	79736	broad.mit.edu	37	chr17	29226112	29226112	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaatgtgttcttttccaAtaacatggatgttcacaaca	6	7	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29226112	G	G	29226112	1	3	223	0	1	0	0	0	0	0	0	0	1872	116	4	5		5	C17orf42	17	29226112	3'UTR	SNP	A	TCGA-80-5611-01A-01D-1625-08	1800965	29226112	51969098	391	169709											
C17orf75	64149	broad.mit.edu	37	chr17	30668352	30668353	+	Intron	INS	-	GAG	GAG													aattatgggctctaaaccaaINSgaggagtatgggggcctggc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	GAG	30668353	GAG	GAG	30668352	6	5	223	0	1	1	1	0	0	0	0	0	1897	87	3	0		0	C17orf75	17	30668352	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	1442240	30668352	50526858	392	169710											
CCL18	6362	broad.mit.edu	37	chr17	34391745	34391745	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttgtcctcgtctgcaccAtggccctctgctcctgtgca	8	17	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34391745	G	G	34391745	3	3	223	1	0	0	0	0	1	0	0	0	2917	217	8	5	45	5	CCL18	17	34391745	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	3723393	34391745	46803465	393	169711											
ZNHIT3	9326	broad.mit.edu	37	chr17	34842538	34842538	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaacagtctccttccacAaaaccatggcgtcgctcaaa	6	13	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34842538	G	G	34842538	1	3	223	0	1	0	0	0	0	0	0	0	18337	145	5	5		5	ZNHIT3	17	34842538	5'UTR	SNP	A	TCGA-80-5611-01A-01D-1625-08	450793	34842538	46352672	394	169712											
NR1D1	9572	broad.mit.edu	37	chr17	38253497	38253497	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcccaaaggagcgagccGggtcttgggtgagggagcca	17	10	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38253497	A	A	38253497	3	1	223	1	0	0	0	0	1	0	0	0	10710	1116	39	4	1681	4	NR1D1	17	38253497	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	3410959	38253497	42941713	395	169713											
RARA	5914	broad.mit.edu	37	chr17	38508718	38508718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaccaccctcaccatcgccGaccagatcaccctcctcaag	4	21	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38508718	T	T	38508718	3	4	223	1	0	0	0	0	1	0	0	0	13160	1058	37	3	951	3	RARA	17	38508718	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	255221	38508718	42686492	396	169714											
KRT15	3866	broad.mit.edu	37	chr17	39673396	39673396	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggatgacccgggagtTgtcgatggtggtggccatga	16	9	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39673396	G	G	39673396	3	3	223	1	0	0	0	0	1	0	0	0	8523	1812	63	5	878	5	KRT15	17	39673396	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	1164678	39673396	41521814	397	169715											
BRCA1	672	broad.mit.edu	37	chr17	41256153	41256153	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttaccaaggaaggattttCgggttcactctgtagaagtc	10	7	2	1	rs80356991		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41256153	G	G	41256153	3	3	223	1	0	0	0	0	1	0	0	0	1507	893	31	4	5306	4	BRCA1	17	41256153	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	1582757	41256153	39939057	398	169716											
NAGS	162417	broad.mit.edu	37	chr17	42083115	42083115	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcctggggctgccggcCcctacggctccctcgggctg	16	16	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42083115	T	T	42083115	2	4	223	1	0	0	0	0	0	0	0	1	10239	610	22	4		4	NAGS	17	42083115	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	826962	42083115	39112095	399	169717											
NMT1	4836	broad.mit.edu	37	chr17	43182161	43182162	+	Intron	INS	-	G	G													agctttgaaatggcagcaaaINSggggtaggaaggaggctgtc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43182162	G	G	43182161	6	5	223	0	1	1	1	0	0	0	0	0	10598	87	3	0		0	NMT1	17	43182161	Intron	INS	-	TCGA-80-5611-01A-01D-1625-08	1099046	43182161	38013049	400	169718											
NPEPPS	9520	broad.mit.edu	37	chr17	45695895	45695895	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagtgtctctgattcagctCtgatcctcttgagctgcctt	9	11	4	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45695895	T	T	45695895	1	4	223	0	1	0	0	0	0	0	0	0	10670	928	32	4		4	NPEPPS	17	45695895	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	2513734	45695895	35499315	401	169719											
MPO	4353	broad.mit.edu	37	chr17	56350741	56350741	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctaccccacctttagctgtCagcccactcgctcctggcct	6	20	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56350741	G	G	56350741	1	3	223	0	1	0	0	0	0	0	0	0	9826	841	29	4		4	MPO	17	56350741	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	10654846	56350741	24844469	402	169720											
CA4	762	broad.mit.edu	37	chr17	58235523	58235523	+	Intron	DEL	G	-	-													gggagaagggcttggggtgaGgggggggattcctcccacaa							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	58235523	-	-	58235523	6	5	223	0	1	1	0	1	0	0	0	0	2544	1015	35	0		0	CA4	17	58235523	Intron	DEL	G	TCGA-80-5611-01A-01D-1625-08	1884782	58235523	22959687	403	169721											
TEX2	55852	broad.mit.edu	37	chr17	62271159	62271159	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcagtctgagctttagacaTaaagtcatcttgctgaccaa	7	9	4	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62271159	A	A	62271159	3	1	223	1	0	0	0	0	1	0	0	0	15903	1406	49	5	1504	5	TEX2	17	62271159	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	4035636	62271159	18924051	404	169722											
ABCA10	10349	broad.mit.edu	37	chr17	67188636	67188636	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttcttatatttctaaaGgcttctacaaaatgtcaccc	4	11	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67188636	T	T	67188636	1	4	223	0	1	0	0	0	0	0	0	0	29	1015	35	2		2	ABCA10	17	67188636	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	4917477	67188636	14006574	405	169723											
BTBD17	388419	broad.mit.edu	37	chr17	72356359	72356359	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatggaggtgccagctgcCtccccgccaacatcggctct	11	15	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72356359	A	A	72356359	3	1	223	1	0	0	0	0	1	0	0	0	1551	680	24	2	1333	2	BTBD17	17	72356359	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	5167723	72356359	8838851	406	169724											
RECQL5	9400	broad.mit.edu	37	chr17	73657187	73657187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaagggaactcacatttcCcttgggtttaccgggggcct	13	10	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73657187	A	A	73657187	1	1	223	0	1	0	0	0	0	0	0	0	13311	638	22	2		2	RECQL5	17	73657187	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1300828	73657187	7538023	407	169725											
MFSD11	79157	broad.mit.edu	37	chr17	74734527	74734527	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaaacttgtggaaatgtGgcggtgagttggaatctgtc	13	5	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74734527	A	A	74734527	2	1	223	1	0	0	0	0	0	0	0	1	9622	1335	47	4		4	MFSD11	17	74734527	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	1077340	74734527	6460683	408	169726											
USP36	57602	broad.mit.edu	37	chr17	76823389	76823389	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaccgcaggaactcatgCgcgtcctcctggttcccaaa	10	14	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76823389	A	A	76823389	2	1	223	1	0	0	0	0	0	0	0	1	17194	755	27	3		3	USP36	17	76823389	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	2088862	76823389	4371821	409	169727											
C17orf62	79415	broad.mit.edu	37	chr17	80404609	80404609	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgccagcctgtgagctccAgggacatgcccacgggaggc	16	14	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80404609	C	C	80404609	1	2	223	0	1	0	0	0	0	0	0	0	1886	203	7	5		5	C17orf62	17	80404609	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	3581220	80404609	790601	410	169728											
PSMA8	143471	broad.mit.edu	37	chr18	23731778	23731778	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaaatgtattgtaaaaAatatgtttttgtggtttttg	9	0	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23731778	T	T	23731778	1	4	223	0	1	0	0	0	0	0	0	0	12779	29	1	5		5	PSMA8	18	23731778	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08		23731778	54345470	411	169729											
DSG4	147409	broad.mit.edu	37	chr18	28970524	28970524	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcaaacagagagaattcaGgagaaggccaaccactctgt	9	10	3	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28970524	A	A	28970524	1	1	223	0	1	0	0	0	0	0	0	0	4819	1015	35	4		4	DSG4	18	28970524	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	5238746	28970524	49106724	412	169730											
FHOD3	80206	broad.mit.edu	37	chr18	34324175	34324175	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtatgtctgtggacgctgAggagtgggcctggtctcgct	17	8	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34324175	G	G	34324175	1	3	223	0	1	0	0	0	0	0	0	0	5940	319	11	5		5	FHOD3	18	34324175	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	5353651	34324175	43753073	413	169731											
KIAA1632	57724	broad.mit.edu	37	chr18	43479488	43479488	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggcattgtgtctaacagctCaccatccagagcaacctgct	8	13	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43479488	T	T	43479488	3	4	223	1	0	0	0	0	1	0	0	0	8319	835	29	4	3121	4	KIAA1632	18	43479488	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	9155313	43479488	34597760	414	169732											
CNDP2	55748	broad.mit.edu	37	chr18	72180861	72180861	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccgtggccgccgtcacGgaagaggagcacaagctgta	16	11	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72180861	T	T	72180861	2	4	223	1	0	0	0	0	0	0	0	1	3626	1103	39	1		1	CNDP2	18	72180861	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	28701373	72180861	5896387	415	169733											
CNDP1	84735	broad.mit.edu	37	chr18	72250894	72250894	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagcgtggtgctaattccGctgggagctgttgatgatgg	16	6	0	3	rs143921310		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72250894	T	T	72250894	2	4	223	1	0	0	0	0	0	0	0	1	3625	1074	38	3		3	CNDP1	18	72250894	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	70033	72250894	5826354	416	169734											
ATP9B	374868	broad.mit.edu	37	chr18	76903695	76903695	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatagggaaatttctaaaGtttttttttctgtagcttat	7	3	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76903695	A	A	76903695	1	1	223	0	1	0	0	0	0	0	0	0	1203	1044	36	4		4	ATP9B	18	76903695	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	4652801	76903695	1173553	417	169735											
C19orf28	126321	broad.mit.edu	37	chr19	3551133	3551133	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccactcgggcgtggccgCcccacagcccaggcaggggc	15	18	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3551133	T	T	3551133	3	4	223	1	0	0	0	0	1	0	0	0	1936	739	26	4	1327	4	C19orf28	19	3551133	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08		3551133	55577850	418	169736											
FSD1	79187	broad.mit.edu	37	chr19	4317155	4317155	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggaataatacacagtgtTgaaatgcctctcttgcctac	8	10	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4317155	G	G	4317155	1	3	223	0	1	0	0	0	0	0	0	0	6130	1827	63	5		5	FSD1	19	4317155	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	766022	4317155	54811828	419	169737											
PNPLA6	10908	broad.mit.edu	37	chr19	7622061	7622061	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaccgcgcaggctccctGtggcggtacgtgcgcgccag	14	17	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7622061	T	T	7622061	2	4	223	1	0	0	0	0	0	0	0	1	12264	1364	48	3		3	PNPLA6	19	7622061	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	3304906	7622061	51506922	420	169738											
FBN3	84467	broad.mit.edu	37	chr19	8148175	8148175	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgtgtacccggcctgaCagtggcagcggaaggagcca	16	12	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8148175	G	G	8148175	3	3	223	1	0	0	0	0	1	0	0	0	5761	478	17	4	1292	4	FBN3	19	8148175	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	526114	8148175	50980808	421	169739											
KANK3	256949	broad.mit.edu	37	chr19	8389370	8389370	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgagctcaggtgggcatgtAgcagagcggccacctcatcc	13	14	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8389370	T	T	8389370	3	4	223	1	0	0	0	0	1	0	0	0	8048	420	15	5	128	5	KANK3	19	8389370	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	241195	8389370	50739613	422	169740											
MARCH2	51257	broad.mit.edu	37	chr19	8486948	8486948	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctttgttgcctcttctctCtgggcgcagtgagtttctcc	10	13	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8486948	G	G	8486948	1	3	223	0	1	0	0	0	0	0	0	0	9393	928	32	4		4	MARCH2	19	8486948	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	97578	8486948	50642035	423	169741											
MUC16	94025	broad.mit.edu	37	chr19	8993565	8993565	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctagggagggcagataaggGggatgacattaaatagattg	15	4	0	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8993565	A	A	8993565	1	1	223	0	1	0	0	0	0	0	0	0	10067	1247	43	4		4	MUC16	19	8993565	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	506617	8993565	50135418	424	169742											
SMARCA4	6597	broad.mit.edu	37	chr19	11118587	11118587	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcttggtaggaggaggagGaagagcagccgcaggcagca	17	8	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11118587	T	T	11118587	4	4	223	1	0	0	0	0	0	1	0	0	14884	1175	41	3	2061	3	SMARCA4	19	11118587	Nonsense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	2125022	11118587	48010396	425	169743											
ZNF791	163049	broad.mit.edu	37	chr19	12739912	12739912	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgcatactggagagaaaccCtataaatgtaaagaatgtgg	10	5	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12739912	G	G	12739912	2	3	223	1	0	0	0	0	0	0	0	1	18292	668	24	4		4	ZNF791	19	12739912	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	1621325	12739912	46389071	426	169744											
AP1M1	8907	broad.mit.edu	37	chr19	16309028	16309028	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	acctcacctgagagccccatCctgtttctgggtaaccgggc	10	15	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16309028	G	G	16309028	1	3	223	0	1	0	0	0	0	0	0	0	736	870	30	4		4	AP1M1	19	16309028	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	3569116	16309028	42819955	427	169745											
ZNF99	7652	broad.mit.edu	37	chr19	22952001	22952001	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taattaaaatcatcctcaccCaggaagaccaggtttctgta	6	10	3	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22952001	T	T	22952001	2	4	223	1	0	0	0	0	0	0	0	1	18333	608	21	4		4	ZNF99	19	22952001	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	6642973	22952001	36176982	428	169746											
KIAA0355	9710	broad.mit.edu	37	chr19	34818306	34818306	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accaccctcttttacctaccAgttactatatatgttacagg	4	12	1	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34818306	G	G	34818306	1	3	223	0	1	0	0	0	0	0	0	0	8240	203	7	5		5	KIAA0355	19	34818306	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	11866305	34818306	24310677	429	169747											
KIRREL2	84063	broad.mit.edu	37	chr19	36349800	36349800	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtgctagcctttgcccAttgagggaaacttgggttac	11	10	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36349800	T	T	36349800	1	4	223	0	1	0	0	0	0	0	0	0	8396	232	8	5		5	KIRREL2	19	36349800	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	1531494	36349800	22779183	430	169748											
WDR62	284403	broad.mit.edu	37	chr19	36587934	36587934	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgtgtctttccagatcctCgttgcctgctaaccaacggc	8	14	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36587934	T	T	36587934	3	4	223	1	0	0	0	0	1	0	0	0	17440	884	31	4	2555	4	WDR62	19	36587934	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	238134	36587934	22541049	431	169749											
HKR1	284459	broad.mit.edu	37	chr19	37838716	37838716	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaactcattgctcagctGgagcgaggggaagcgccctg	13	12	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37838716	A	A	37838716	2	1	223	1	0	0	0	0	0	0	0	1	7261	1335	47	4		4	HKR1	19	37838716	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	1250782	37838716	21290267	432	169750											
RYR1	6261	broad.mit.edu	37	chr19	39013721	39013721	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagctgttcaggatggTgggcgagatcttcatctact	15	7	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39013721	G	G	39013721	3	3	223	1	0	0	0	0	1	0	0	0	13879	1696	59	5	10583	5	RYR1	19	39013721	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	1175005	39013721	20115262	433	169751											
ACTN4	81	broad.mit.edu	37	chr19	39219684	39219684	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctggtcgaccccaaccatAgcggccttgtgaccttccaa	9	16	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39219684	T	T	39219684	3	4	223	1	0	0	0	0	1	0	0	0	207	420	15	5	2545	5	ACTN4	19	39219684	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	205963	39219684	19909299	434	169752											
PSG9	5678	broad.mit.edu	37	chr19	43762450	43762450	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctatgatttctagtaatttGggggataaagagcttttgtc	11	4	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43762450	C	C	43762450	3	2	223	1	0	0	0	0	1	0	0	0	12768	1357	47	4	141	4	PSG9	19	43762450	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4542766	43762450	15366533	435	169753											
ZNF221	7638	broad.mit.edu	37	chr19	44471654	44471654	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttttttttttttgagacAgagtctcactctttcaccca	4	9	3	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44471654	T	T	44471654	1	4	223	0	1	0	0	0	0	0	0	0	17901	203	7	5		5	ZNF221	19	44471654	3'UTR	SNP	A	TCGA-80-5611-01A-01D-1625-08	709204	44471654	14657329	436	169754											
LMTK3	114783	broad.mit.edu	37	chr19	49004582	49004582	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccaccaccatgaaggtcCcgtggagctccccgaggagc	13	15	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49004582	T	T	49004582	3	4	223	1	0	0	0	0	1	0	0	0	8934	623	22	4	3451	4	LMTK3	19	49004582	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	4532928	49004582	10124401	437	169755											
SPHK2	56848	broad.mit.edu	37	chr19	49131413	49131430	+	Splice_Site	DEL	CTCCAGGTGCTGAACGGG	-	-													caggcttctggtctcccaccCtccaggtgctgaacgggctc							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49131430	-	-	49131413	8	5	223	1	0	1	0	1	0	0	1	0	15165	696	24	0		0	SPHK2	19	49131413	Splice_Site	DEL	CTCCAGGTGCTGAACGGG	TCGA-80-5611-01A-01D-1625-08	126831	49131413	9997570	438	169756											
PPFIA3	8541	broad.mit.edu	37	chr19	49641825	49641826	+	Intron	DEL	AA	-	-													ttccctaaaggttcaaactcAaagggcaaaggggaggctga					rs3032696		TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	49641826	-	-	49641825	6	5	223	0	1	1	0	1	0	0	0	0	12407	145	5	0		0	PPFIA3	19	49641825	Intron	DEL	AA	TCGA-80-5611-01A-01D-1625-08	510412	49641825	9487158	439	169757											
KLK2	3817	broad.mit.edu	37	chr19	51380187	51380187	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtccaatgacatgtgtGctagagcttactctgagaag	10	9	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51380187	C	C	51380187	3	2	223	1	0	0	0	0	1	0	0	0	8475	1319	46	4	567	4	KLK2	19	51380187	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	1738362	51380187	7748796	440	169758											
ZNF577	84765	broad.mit.edu	37	chr19	52376970	52376970	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attacaaaacctaaatgagaTttcaaacttttacaatgcga	4	7	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52376970	C	C	52376970	1	2	223	0	1	0	0	0	0	0	0	0	18136	1508	52	5		5	ZNF577	19	52376970	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	996783	52376970	6752013	441	169759											
NLRP7	199713	broad.mit.edu	37	chr19	55452944	55452944	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgccatcagcctcttccaCctcagaccatggggtcttct	7	16	5	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55452944	T	T	55452944	3	4	223	1	0	0	0	0	1	0	0	0	10577	507	18	4	3017	4	NLRP7	19	55452944	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	3075974	55452944	3676039	442	169760											
PPP1R12C	54776	broad.mit.edu	37	chr19	55607718	55607718	+	Intron	DEL	G	-	-													ccgaagctgcaaggagggaaGggggctgcaggggaggggtg							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55607718	-	-	55607718	6	5	223	0	1	1	0	1	0	0	0	0	12457	1015	35	0		0	PPP1R12C	19	55607718	Intron	DEL	G	TCGA-80-5611-01A-01D-1625-08	154774	55607718	3521265	443	169761											
ZNF471	57573	broad.mit.edu	37	chr19	57027786	57027786	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggtgaggatcttttccCtcctgcataatctaccttta	6	11	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57027786	A	A	57027786	1	1	223	0	1	0	0	0	0	0	0	0	18057	696	24	2		2	ZNF471	19	57027786	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	1420068	57027786	2101197	444	169762											
ZNF343	79175	broad.mit.edu	37	chr20	2464228	2464228	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	acacataaggcttctctccaGagtgcgtccgctcgtgtatg	10	12	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2464228	A	A	2464228	3	1	223	1	0	0	0	0	1	0	0	0	17984	942	33	4	424	4	ZNF343	20	2464228	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08		2464228	60561292	445	169763											
TMX4	56255	broad.mit.edu	37	chr20	7963206	7963206	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcatttgaatcatcttTttcctcctccgcatcctgca	3	14	4	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7963206	G	G	7963206	3	3	223	1	0	0	0	0	1	0	0	0	16392	1850	64	5	311	5	TMX4	20	7963206	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	5498978	7963206	55062314	446	169764											
C20orf79	140856	broad.mit.edu	37	chr20	18794374	18794374	+	5'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccccacttggccttacctttGatgtcacaatctgacctgtg	7	14	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18794374	C	C	18794374	1	2	223	0	1	0	0	0	0	0	0	0	2141	1305	45	4		4	C20orf79	20	18794374	5'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	10831168	18794374	44231146	447	169765											
NKX2-2	4821	broad.mit.edu	37	chr20	21494245	21494245	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagagccctcctcatcgttGgtgtccggcaggtctaagat	11	12	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21494245	C	C	21494245	2	2	223	1	0	0	0	0	0	0	0	1	10545	1335	47	4		4	NKX2-2	20	21494245	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	2699871	21494245	41531275	448	169766											
ZNF337	26152	broad.mit.edu	37	chr20	25667036	25667036	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtctcacctgtctcctGgctccctgaggtcccatgac	10	15	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25667036	T	T	25667036	2	4	223	1	0	0	0	0	0	0	0	1	17979	1335	47	2		2	ZNF337	20	25667036	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	4172791	25667036	37358484	449	169767											
CHD6	84181	broad.mit.edu	37	chr20	40126136	40126136	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccatttacaatgtaagTaggaactatccaaagacata	7	8	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40126136	G	G	40126136	3	3	223	1	0	0	0	0	1	0	0	0	3360	1638	57	5	7287	5	CHD6	20	40126136	Missense_Mutation	SNP	T	TCGA-80-5611-01A-01D-1625-08	14459100	40126136	22899384	450	169768											
CYP24A1	1591	broad.mit.edu	37	chr20	52774146	52774146	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacacatgcagagacacaTagtatttaaaataaccagaa	5	7	0	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52774146	C	C	52774146	1	2	223	0	1	0	0	0	0	0	0	0	4187	1421	49	5		5	CYP24A1	20	52774146	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	12648010	52774146	10251374	451	169769											
TFAP2C	7022	broad.mit.edu	37	chr20	55204644	55204644	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaagtacgaagaggactGcgaggtgagctggggctccg	17	8	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55204644	C	C	55204644	3	2	223	1	0	0	0	0	1	0	0	0	15912	1319	46	4	46	4	TFAP2C	20	55204644	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	2430498	55204644	7820876	452	169770											
SPO11	23626	broad.mit.edu	37	chr20	55908978	55908978	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctttcttcaattaacacTgtaatacttgtcatattcaa	3	8	4	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55908978	C	C	55908978	1	2	223	0	1	0	0	0	0	0	0	0	15195	1595	55	5		5	SPO11	20	55908978	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	704334	55908978	7116542	453	169771											
LAMA5	3911	broad.mit.edu	37	chr20	60885352	60885352	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcccacatcaggcagtGtagctcctgggaggtctgcg	14	13	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60885352	A	A	60885352	3	1	223	1	0	0	0	0	1	0	0	0	8681	1377	48	4	487	4	LAMA5	20	60885352	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	4976374	60885352	2140168	454	169772											
BAGE2	85319	broad.mit.edu	37	chr21	11058219	11058219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagatgtgactgaaatcCtgaaaggtgtcggctcctgc	13	8	0	4			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11058219	A	A	11058219	3	1	223	1	0	0	0	0	1	0	0	0	1297	681	24	2	116	2	BAGE2	21	11058219	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08		11058219	37071676	455	169773											
CRYAA	1409	broad.mit.edu	37	chr21	44592264	44592264	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcggccctctcttgctcCctgtctgccgatggcatgct	10	16	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44592264	A	A	44592264	2	1	223	1	0	0	0	0	0	0	0	1	3937	610	22	2		2	CRYAA	21	44592264	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08	33534045	44592264	3537631	456	169774											
COL6A1	1291	broad.mit.edu	37	chr21	47404299	47404299	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cggccgcgacgcactcaaaaGcagcgtggacgcggtcaagt	14	13	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47404299	C	C	47404299	3	2	223	1	0	0	0	0	1	0	0	0	3731	971	34	4	354	4	COL6A1	21	47404299	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	2812035	47404299	725596	457	169775											
S100B	6285	broad.mit.edu	37	chr21	48019476	48019476	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaattttggaccatcaaaAcatgattaaaagttgagtga	9	4	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48019476	C	C	48019476	1	2	223	0	1	0	0	0	0	0	0	0	13899	58	2	5		5	S100B	21	48019476	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	615177	48019476	110419	458	169776											
PIWIL3	440822	broad.mit.edu	37	chr22	25151777	25151777	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagaatgttgtaatagcgTaggcaatctggcgacgtggg	15	5	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25151777	C	C	25151777	2	2	223	1	0	0	0	0	0	0	0	1	12054	1625	57	5		5	PIWIL3	22	25151777	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08		25151777	26152789	459	169777											
HPS4	89781	broad.mit.edu	37	chr22	26875276	26875276	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagctcttgttggatcgccTtcttcctttaccttggaacc	7	14	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26875276	C	C	26875276	2	2	223	1	0	0	0	0	0	0	0	1	7408	1606	56	5		5	HPS4	22	26875276	Silent	SNP	T	TCGA-80-5611-01A-01D-1625-08	1723499	26875276	24429290	460	169778											
LARGE	9215	broad.mit.edu	37	chr22	33777701	33777701	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caagctggttcttacgccagGaggctttaggctttccagaa	11	10	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33777701	T	T	33777701	1	4	223	0	1	0	0	0	0	0	0	0	8699	1189	41	3		3	LARGE	22	33777701	Intron	SNP	G	TCGA-80-5611-01A-01D-1625-08	6902425	33777701	17526865	461	169779											
KLHL15	80311	broad.mit.edu	37	chrX	24006107	24006107	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatacttgtaaaccatcCagcttgcagggcatccgagg	10	11	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24006107	A	A	24006107	2	1	223	1	0	0	0	0	0	0	0	1	8442	581	21	2		2	KLHL15	23	24006107	Silent	SNP	C	TCGA-80-5611-01A-01D-1625-08		24006107	131264453	462	169780											
ACRC	93953	broad.mit.edu	37	chrX	70824260	70824260	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcaggatcttggtgagaAtctcagcaaaccaccaagtg	11	9	2	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70824260	G	G	70824260	3	3	223	1	0	0	0	0	1	0	0	0	171	101	4	5	1159	5	ACRC	23	70824260	Missense_Mutation	SNP	A	TCGA-80-5611-01A-01D-1625-08	46818153	70824260	84446300	463	169781											
BRWD3	254065	broad.mit.edu	37	chrX	80001218	80001218	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggttaattgcctggcagaGgtgatattcactgaaaaaaa	10	7	1	3			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80001218	T	T	80001218	2	4	223	1	0	0	0	0	0	0	0	1	1535	987	35	2		2	BRWD3	23	80001218	Silent	SNP	G	TCGA-80-5611-01A-01D-1625-08	9176958	80001218	75269342	464	169782											
HDX	139324	broad.mit.edu	37	chrX	83724072	83724072	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaactggttcaattttaCaaggtcggtggcacacagaa	9	10	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83724072	A	A	83724072	3	1	223	1	0	0	0	0	1	0	0	0	7093	478	17	3	1445	3	HDX	23	83724072	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	3722854	83724072	71546488	465	169783											
ZNF711	7552	broad.mit.edu	37	chrX	84525150	84525150	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaccaggcagtggcaaaCaggtaaatactttgctttat	9	7	0	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84525150	T	T	84525150	3	4	223	1	0	0	0	0	1	0	0	0	18244	478	17	4	1128	4	ZNF711	23	84525150	Missense_Mutation	SNP	C	TCGA-80-5611-01A-01D-1625-08	801078	84525150	70745410	466	169784											
ATG4A	115201	broad.mit.edu	37	chrX	107397006	107397006	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaaaacatgaacttattGcataaaacttttctagtcag	4	7	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107397006	T	T	107397006	1	4	223	0	1	0	0	0	0	0	0	0	1100	1334	46	3		3	ATG4A	23	107397006	3'UTR	SNP	G	TCGA-80-5611-01A-01D-1625-08	22871856	107397006	47873554	467	169785											
NKAP	79576	broad.mit.edu	37	chrX	119070117	119070117	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taataaatataaagcacttaTtggggtacctggcacaaggt	9	6	0	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119070117	C	C	119070117	1	2	223	0	1	0	0	0	0	0	0	0	10534	1508	52	5		5	NKAP	23	119070117	Intron	SNP	T	TCGA-80-5611-01A-01D-1625-08	11673111	119070117	36200443	468	169786											
ATP1B4	23439	broad.mit.edu	37	chrX	119504761	119504761	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaatatgcttgcacagcAtgttcagcctcaattaactt	6	10	2	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119504761	G	G	119504761	1	3	223	0	1	0	0	0	0	0	0	0	1139	232	8	5		5	ATP1B4	23	119504761	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	434644	119504761	35765799	469	169787											
FRMD7	90167	broad.mit.edu	37	chrX	131216668	131216668	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catgcagcttctgattttccActtggctccctgtaggtttc	8	12	1	1			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131216668	T	T	131216668	1	4	223	0	1	0	0	0	0	0	0	0	6115	174	6	5		5	FRMD7	23	131216668	Intron	SNP	A	TCGA-80-5611-01A-01D-1625-08	11711907	131216668	24053892	470	169788											
SLITRK2	84631	broad.mit.edu	37	chrX	144904667	144904667	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttttgtgggagagattGtctgtgagactccctttagg	13	6	1	2			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144904667	A	A	144904667	3	1	223	1	0	0	0	0	1	0	0	0	14857	1377	48	4	726	4	SLITRK2	23	144904667	Missense_Mutation	SNP	G	TCGA-80-5611-01A-01D-1625-08	13687999	144904667	10365893	471	169789											
FMR1	2332	broad.mit.edu	37	chrX	147007225	147007225	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgtttttttttaataCtttgtctttaacactgttta	4	5	2	0			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147007225	T	T	147007225	1	4	223	0	1	0	0	0	0	0	0	0	6018	580	20	4		4	FMR1	23	147007225	Intron	SNP	C	TCGA-80-5611-01A-01D-1625-08	2102558	147007225	8263335	472	169790											
F8	2157	broad.mit.edu	37	chrX	154157685	154157686	+	Frame_Shift_Ins	INS	-	T	T													gaatggctaaagaaaggttaINSttttttttggctccttgtaa							TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154157686	T	T	154157685	7	5	223	1	0	1	1	0	0	0	0	0	5393	446	16	0	2755	0	F8	23	154157685	Frame_Shift_Ins	INS	-	TCGA-80-5611-01A-01D-1625-08	7150460	154157685	1112875	473	169791											
ATAD3B	83858	broad.mit.edu	37	chr1	1412655	1412655	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgccacatgcgcccgcaggTtacgccaaggaggccctgaa	13	14	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1412655	C	C	1412655	2	2	224	1	0	0	0	0	0	0	0	1	1078	1739	60	5		5	ATAD3B	1	1412655	Silent	SNP	T	TCGA-86-6562-01A-11D-1753-08		1412655	247837966	1	169792											
SPEN	23013	broad.mit.edu	37	chr1	16202693	16202693	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttttccccctcctaaatGcagggcttcagataacaggg	8	11	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16202693	T	T	16202693	1	4	224	0	1	0	0	0	0	0	0	0	15156	1334	46	3		3	SPEN	1	16202693	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	14790038	16202693	233047928	2	169793											
MUL1	79594	broad.mit.edu	37	chr1	20827068	20827068	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacccaattcctccctcaaTcatacctggaggtgacagct	6	15	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20827068	C	C	20827068	1	2	224	0	1	0	0	0	0	0	0	0	10078	1450	50	5		5	MUL1	1	20827068	3'UTR	SNP	T	TCGA-86-6562-01A-11D-1753-08	4624375	20827068	228423553	3	169794											
KPNA6	23633	broad.mit.edu	37	chr1	32573724	32573724	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgccaagagtgagcgagcgGacccgcgatgggtgagtgag	18	10	0	4			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32573724	A	A	32573724	1	1	224	0	1	0	0	0	0	0	0	0	8505	1189	41	4		4	KPNA6	1	32573724	5'UTR	SNP	G	TCGA-86-6562-01A-11D-1753-08	11746656	32573724	216676897	4	169795											
SF3A3	10946	broad.mit.edu	37	chr1	38450582	38450582	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctacctcccgggttcaagCgattgtcctgcctcggccac	9	17	2	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38450582	T	T	38450582	1	4	224	0	1	0	0	0	0	0	0	0	14261	783	27	4		4	SF3A3	1	38450582	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	5876858	38450582	210800039	5	169796											
LRRC41	10489	broad.mit.edu	37	chr1	46746053	46746053	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	actcctctcccttcaccattCtggctgggtcctacctttga	6	16	3	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46746053	G	G	46746053	1	3	224	0	1	0	0	0	0	0	0	0	9086	928	32	4		4	LRRC41	1	46746053	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	8295471	46746053	202504568	6	169797											
ZFYVE9	9372	broad.mit.edu	37	chr1	52703522	52703522	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acctggcttgtctgccagatGagaagaatgttcttgttgta	11	7	2	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52703522	T	T	52703522	4	4	224	1	0	0	0	0	0	1	0	0	17797	1291	45	3	439	3	ZFYVE9	1	52703522	Nonsense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	5957469	52703522	196547099	7	169798											
PDE4B	5142	broad.mit.edu	37	chr1	66713137	66713137	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagtttcccactttctcTttaagctttgatgtggaaaa	7	9	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66713137	G	G	66713137	1	3	224	0	1	0	0	0	0	0	0	0	11734	1624	56	5		5	PDE4B	1	66713137	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	14009615	66713137	182537484	8	169799											
HSD3B1	3283	broad.mit.edu	37	chr1	120050058	120050058	+	5'UTR	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagatctgctccccagcatCttctgtttcctggtgagtga	9	12	4	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120050058	T	T	120050058	1	4	224	0	1	0	0	0	0	0	0	0	7457	928	32	4		4	HSD3B1	1	120050058	5'UTR	SNP	C	TCGA-86-6562-01A-11D-1753-08	53336921	120050058	129200563	9	169800			1	137		4	4	319	C		7.050221e-10
HSD3B1	3283	broad.mit.edu	37	chr1	120050082	120050082	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcctggtgagtgattcCtgctactttggatggccatg	12	8	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120050082	T	T	120050082	1	4	224	0	1	0	0	0	0	0	0	0	7457	696	24	4		4	HSD3B1	1	120050082	5'UTR	SNP	C	TCGA-86-6562-01A-11D-1753-08	24	120050082	129200539	10	169801			1	137		4	4	319	C		7.050221e-10
HSD3B1	3283	broad.mit.edu	37	chr1	120050242	120050242	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaattgagagaggaattttCtagtaagtaaacttgggtca	11	3	2	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120050242	T	T	120050242	3	4	224	1	0	0	0	0	1	0	0	0	7457	913	32	4	145	4	HSD3B1	1	120050242	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	160	120050242	129200379	11	169802			1	137		4	4	319	C		7.050221e-10
HSD3B1	3283	broad.mit.edu	37	chr1	120050376	120050376	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatctcacatccaaagtcatCaagaaataaatattaaatag	3	7	3	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120050376	T	T	120050376	1	4	224	0	1	0	0	0	0	0	0	0	7457	841	29	4		4	HSD3B1	1	120050376	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	134	120050376	129200245	12	169803			1	137		4	4	319	C		7.050221e-10
SETDB1	9869	broad.mit.edu	37	chr1	150916440	150916440	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatgcttcctatgtcacacAgtcggaactgtatcccattt	6	12	1	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150916440	T	T	150916440	3	4	224	1	0	0	0	0	1	0	0	0	14251	188	7	5	946	5	SETDB1	1	150916440	Missense_Mutation	SNP	A	TCGA-86-6562-01A-11D-1753-08	30866064	150916440	98334181	13	169804											
TCHHL1	126637	broad.mit.edu	37	chr1	152060023	152060023	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgaaggacacagggctgCatgaaaacacagtgagaaat	12	7	0	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152060023	T	T	152060023	1	4	224	0	1	0	0	0	0	0	0	0	15823	725	25	4		4	TCHHL1	1	152060023	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	1143583	152060023	97190598	14	169805											
ILF2	3608	broad.mit.edu	37	chr1	153642430	153642430	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aataacacgccaacaattttGaaaacatgtcagtcctcaga	5	10	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153642430	T	T	153642430	1	4	224	0	1	0	0	0	0	0	0	0	7781	1305	45	3		3	ILF2	1	153642430	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	1582407	153642430	95608191	15	169806											
NUP210L	91181	broad.mit.edu	37	chr1	154072649	154072649	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaccatgattttggcagGgcgtggtggctcaggcttgt	14	7	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154072649	A	A	154072649	1	1	224	0	1	0	0	0	0	0	0	0	10856	1247	43	4		4	NUP210L	1	154072649	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	430219	154072649	95177972	16	169807											
VANGL2	57216	broad.mit.edu	37	chr1	160395221	160395221	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtcctgagggggtgggAgggggcttggttctcaggcc	23	7	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160395221	G	G	160395221	1	3	224	0	1	0	0	0	0	0	0	0	17247	319	11	5		5	VANGL2	1	160395221	3'UTR	SNP	A	TCGA-86-6562-01A-11D-1753-08	6322572	160395221	88855400	17	169808											
ADCY10	55811	broad.mit.edu	37	chr1	167815048	167815048	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cgaatcctgtggcactcgatCacctcattctccagttcacg	7	15	4	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167815048	G	G	167815048	2	3	224	1	0	0	0	0	0	0	0	1	293	813	29	4		4	ADCY10	1	167815048	Silent	SNP	C	TCGA-86-6562-01A-11D-1753-08	7419827	167815048	81435573	18	169809											
XCL2	6846	broad.mit.edu	37	chr1	168510221	168510221	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggtcacagctgtattggtcGattgctgggttcctgttggc	15	8	1	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168510221	A	A	168510221	3	1	224	1	0	0	0	0	1	0	0	0	17551	1059	37	4	34	4	XCL2	1	168510221	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	695173	168510221	80740400	19	169810											
C1orf112	55732	broad.mit.edu	37	chr1	169816906	169816906	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcaatgttggattttgtaTcttctttaggaaaacttttt	8	4	2	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	169816906	G	G	169816906	3	3	224	1	0	0	0	0	1	0	0	0	2005	1435	50	5	2090	5	C1orf112	1	169816906	Missense_Mutation	SNP	T	TCGA-86-6562-01A-11D-1753-08	1306685	169816906	79433715	20	169811											
PPP1R12B	4660	broad.mit.edu	37	chr1	202457643	202457643	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatcttgcttttgctattActtttttttctctgcaggtc	6	8	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	202457643	G	G	202457643	1	3	224	0	1	0	0	0	0	0	0	0	12456	406	14	5		5	PPP1R12B	1	202457643	Intron	SNP	A	TCGA-86-6562-01A-11D-1753-08	32640737	202457643	46792978	21	169812											
BTG2	7832	broad.mit.edu	37	chr1	203276285	203276285	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtccaagggctccggctacCgctgcattcgcatcaaccac	9	17	1	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203276285	G	G	203276285	3	3	224	1	0	0	0	0	1	0	0	0	1564	652	23	4	202	4	BTG2	1	203276285	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	818642	203276285	45974336	22	169813											
ESRRG	2104	broad.mit.edu	37	chr1	216824404	216824404	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgatttcacattcattcGtggcagggcagctgtattct	10	8	3	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216824404	A	A	216824404	3	1	224	1	0	0	0	0	1	0	0	0	5304	1145	40	4	896	4	ESRRG	1	216824404	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	13548119	216824404	32426217	23	169814											
EPRS	2058	broad.mit.edu	37	chr1	220160763	220160763	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatcctttagtttaacaaaaGaggaaaaagagaagacagta	9	4	0	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220160763	C	C	220160763	1	2	224	0	1	0	0	0	0	0	0	0	5233	957	33	4		4	EPRS	1	220160763	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	3336359	220160763	29089858	24	169815											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220344519	220344519	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctgaatcaatattaacttGaatgagcttttaacttgaaa	5	5	2	4			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220344519	C	C	220344519	1	2	224	0	1	0	0	0	0	0	0	0	13044	1305	45	4		4	RAB3GAP2	1	220344519	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	183756	220344519	28906102	25	169816											
ENAH	55740	broad.mit.edu	37	chr1	225702299	225702299	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcagaaaggtatttaccCgtgacactttcctaagtttt	6	8	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225702299	T	T	225702299	3	4	224	1	0	0	0	0	1	0	0	0	5153	666	23	4	594	4	ENAH	1	225702299	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	5357780	225702299	23548322	26	169817											
PRSS38	339501	broad.mit.edu	37	chr1	228003650	228003650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcctcctcccccatgtcGcctgcccatcccttcccctc	6	23	0	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228003650	T	T	228003650	1	4	224	0	1	0	0	0	0	0	0	0	12733	1102	38	3		3	PRSS38	1	228003650	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	2301351	228003650	21246971	27	169818											
C1orf31	388753	broad.mit.edu	37	chr1	234509420	234509420	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aagccggacgtgggcgggcaGagaggtcggcttgctgatgg	20	8	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234509420	A	A	234509420	1	1	224	0	1	0	0	0	0	0	0	0	2059	957	33	4		4	C1orf31	1	234509420	5'Flank	SNP	G	TCGA-86-6562-01A-11D-1753-08	6505770	234509420	14741201	28	169819											
ERO1LB	56605	broad.mit.edu	37	chr1	236399750	236399750	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atatttcaccatttatctaaGatttaacagtacaaagcaaa	3	7	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	236399750	C	C	236399750	1	2	224	0	1	0	0	0	0	0	0	0	5282	957	33	4		4	ERO1LB	1	236399750	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	1890330	236399750	12850871	29	169820											
ROCK2	9475	broad.mit.edu	37	chr2	11389677	11389677	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatctcctaaaaataactgCactgttaccatgtaaatgaa	4	8	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11389677	A	A	11389677	1	1	224	0	1	0	0	0	0	0	0	0	13629	725	25	3		3	ROCK2	2	11389677	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08		11389677	231809696	30	169821											
KIF3C	3797	broad.mit.edu	37	chr2	26151924	26151924	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtggaaggtggaggccGctgaggactctggcacctgc	18	9	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26151924	A	A	26151924	3	1	224	1	0	0	0	0	1	0	0	0	8372	1086	38	4	80	4	KIF3C	2	26151924	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	14762247	26151924	217047449	31	169822											
NLRC4	58484	broad.mit.edu	37	chr2	32476011	32476011	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatcagcacttctcggatgaGagcctgggcgctgtcttctg	13	11	4	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32476011	C	C	32476011	3	2	224	1	0	0	0	0	1	0	0	0	10564	942	33	4	2176	4	NLRC4	2	32476011	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	6324087	32476011	210723362	32	169823											
EML4	27436	broad.mit.edu	37	chr2	42488319	42488319	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagaaaaaaaagaggaatctCattctaatgatcaaagtcca	7	6	3	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42488319	G	G	42488319	3	3	224	1	0	0	0	0	1	0	0	0	5141	826	29	4	411	4	EML4	2	42488319	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	10012308	42488319	200711054	33	169824											
SOCS5	9655	broad.mit.edu	37	chr2	46986084	46986084	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccagagttcattggatgctGataaaaagtttggtagaact	10	6	1	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46986084	C	C	46986084	3	2	224	1	0	0	0	0	1	0	0	0	15031	1290	45	4	417	4	SOCS5	2	46986084	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	4497765	46986084	196213289	34	169825											
TMEM131	23505	broad.mit.edu	37	chr2	98413483	98413483	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agaattacagatttttctctCattaaatctgcacaatcttt	3	8	4	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98413483	T	T	98413483	1	4	224	0	1	0	0	0	0	0	0	0	16167	841	29	4		4	TMEM131	2	98413483	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	51427399	98413483	144785890	35	169826											
SCN9A	6335	broad.mit.edu	37	chr2	167060857	167060857	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctatatgctaaagatataTatatttttttacccctggtc	4	7	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167060857	C	C	167060857	1	2	224	0	1	0	0	0	0	0	0	0	14038	1421	49	5		5	SCN9A	2	167060857	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	68647374	167060857	76138516	36	169827											
XIRP2	129446	broad.mit.edu	37	chr2	168101954	168101954	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagatgtgcgaggaacaaGgtggctttttgaaacaaagc	14	5	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168101954	T	T	168101954	3	4	224	1	0	0	0	0	1	0	0	0	17557	1000	35	2	4082	2	XIRP2	2	168101954	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	1041097	168101954	75097419	37	169828											
PDE11A	50940	broad.mit.edu	37	chr2	178969106	178969106	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagaggccccagagatttGgaccagtcttgtgattttca	10	9	2	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178969106	A	A	178969106	4	1	224	1	0	0	0	0	0	1	0	0	11725	1357	47	4	2962	4	PDE11A	2	178969106	Nonsense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	10867152	178969106	64230267	38	169829											
GTF3C3	9330	broad.mit.edu	37	chr2	197629319	197629319	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ataggtatacaaaagcgtttGagccattccggtattcccac	8	10	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197629319	C	C	197629319	3	2	224	1	0	0	0	0	1	0	0	0	6939	1299	45	4	35	4	GTF3C3	2	197629319	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	18660213	197629319	45570054	39	169830											
NEK4	6787	broad.mit.edu	37	chr3	52802733	52802733	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accaaccttgtggagcctgtCagataacctattcattttgt	7	10	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52802733	G	G	52802733	1	3	224	0	1	0	0	0	0	0	0	0	10421	841	29	4		4	NEK4	3	52802733	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08		52802733	145219697	40	169831											
MAGI1	9223	broad.mit.edu	37	chr3	65350771	65350771	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgaatttctagacaattagGagtttaataaaccattttaa	5	4	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65350771	A	A	65350771	1	1	224	0	1	0	0	0	0	0	0	0	9282	1189	41	4		4	MAGI1	3	65350771	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	12548038	65350771	132671659	41	169832											
CEP63	80254	broad.mit.edu	37	chr3	134280398	134280398	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcttaaaaaaatcactatCttggaaataaaaataaacac	2	8	3	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134280398	A	A	134280398	1	1	224	0	1	0	0	0	0	0	0	0	3287	928	32	3		3	CEP63	3	134280398	3'UTR	SNP	C	TCGA-86-6562-01A-11D-1753-08	68929627	134280398	63742032	42	169833											
DGKQ	1609	broad.mit.edu	37	chr4	954754	954754	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcagccggccatgccagCaccacctgggtaccactggc	12	18	0	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	954754	A	A	954754	1	1	224	0	1	0	0	0	0	0	0	0	4513	725	25	3		3	DGKQ	4	954754	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08		954754	190199522	43	169834											
DGKQ	1609	broad.mit.edu	37	chr4	955724	955724	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcctgctgggggacctgAgggaggtatgccgttgacag	17	8	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	955724	T	T	955724	1	4	224	0	1	0	0	0	0	0	0	0	4513	319	11	5		5	DGKQ	4	955724	Intron	SNP	A	TCGA-86-6562-01A-11D-1753-08	970	955724	190198552	44	169835											
FRYL	285527	broad.mit.edu	37	chr4	48542536	48542536	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgctttgtacattttcaatCttctctcgactctctgattt	4	10	4	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48542536	T	T	48542536	2	4	224	1	0	0	0	0	0	0	0	1	6124	912	32	4		4	FRYL	4	48542536	Silent	SNP	C	TCGA-86-6562-01A-11D-1753-08	47586812	48542536	142611740	45	169836											
CCDC158	339965	broad.mit.edu	37	chr4	77266149	77266149	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagttagggaggtagatgacTtctttgagcaagagaagaac	14	4	1	5			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77266149	A	A	77266149	1	1	224	0	1	0	0	0	0	0	0	0	2817	1624	56	5		5	CCDC158	4	77266149	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	28723613	77266149	113888127	46	169837											
CXXC4	80319	broad.mit.edu	37	chr4	105412175	105412175	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgacggctgctgaggctGctgcgggggagtgaagggct	20	8	0	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105412175	A	A	105412175	3	1	224	1	0	0	0	0	1	0	0	0	4131	1319	46	4	326	4	CXXC4	4	105412175	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	28146026	105412175	85742101	47	169838											
CFI	3426	broad.mit.edu	37	chr4	110688014	110688014	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaacattaacttagcaaCaaattaaagactcctgtttg	4	7	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110688014	A	A	110688014	1	1	224	0	1	0	0	0	0	0	0	0	3319	493	17	3		3	CFI	4	110688014	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	5275839	110688014	80466262	48	169839											
FAT1	2195	broad.mit.edu	37	chr4	187521354	187521354	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gagtccctggggctgtgcccGatgcagtatgaacttggtct	14	10	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187521354	A	A	187521354	3	1	224	1	0	0	0	0	1	0	0	0	5746	1059	37	4	1989	4	FAT1	4	187521354	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	76833340	187521354	3632922	49	169840											
TRIML1	339976	broad.mit.edu	37	chr4	189064971	189064971	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagcgcaccatgctaacTtctttcttttttacccgtag	5	12	3	0	rs139303406	by1000genomes	TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189064971	G	G	189064971	1	3	224	0	1	0	0	0	0	0	0	0	16675	1624	56	5		5	TRIML1	4	189064971	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	1543617	189064971	2089305	50	169841											
C5orf42	65250	broad.mit.edu	37	chr5	37142326	37142326	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatgacttcacaaacctttCataactatattcccagtaaa	2	10	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37142326	T	T	37142326	1	4	224	0	1	0	0	0	0	0	0	0	2324	841	29	4		4	C5orf42	5	37142326	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08		37142326	143772934	51	169842											
COL23A1	91522	broad.mit.edu	37	chr5	177772042	177772042	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcaccacctggagatctcCagagtcatttggaatcttat	7	11	4	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	177772042	A	A	177772042	1	1	224	0	1	0	0	0	0	0	0	0	3714	609	21	2		2	COL23A1	5	177772042	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	140629716	177772042	3143218	52	169843											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33071551	33071551	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaacaatggccaccagGtcactgctagactcaccaca	7	13	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33071551	A	A	33071551	1	1	224	0	1	0	0	0	0	0	0	0	7270	1276	44	4		4	HLA-DPB1	6	33071551	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08		33071551	138043516	53	169844											
ZNF451	26036	broad.mit.edu	37	chr6	57006175	57006175	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatgtccaaattgcttcCttctttttagcagaaaggag	8	8	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57006175	T	T	57006175	3	4	224	1	0	0	0	0	1	0	0	0	18049	681	24	4	808	4	ZNF451	6	57006175	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	23934624	57006175	114108892	54	169845											
LAMA2	3908	broad.mit.edu	37	chr6	129725163	129725163	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctttttgaatttttcaaAtgtaagtcagtctggaaaat	6	5	3	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129725163	G	G	129725163	1	3	224	0	1	0	0	0	0	0	0	0	8678	116	4	5		5	LAMA2	6	129725163	Intron	SNP	A	TCGA-86-6562-01A-11D-1753-08	72718988	129725163	41389904	55	169846											
SHPRH	257218	broad.mit.edu	37	chr6	146215302	146215302	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacctgaaatgtcttaacaCgactgatttgtgcaaattcc	6	9	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146215302	T	T	146215302	3	4	224	1	0	0	0	0	1	0	0	0	14404	536	19	4	405	4	SHPRH	6	146215302	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	16490139	146215302	24899765	56	169847											
KATNA1	11104	broad.mit.edu	37	chr6	149925943	149925943	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagagaaaaaaacaagcGcttttgattcatttattttg	7	4	1	3	rs144019539	by1000genomes	TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149925943	T	T	149925943	1	4	224	0	1	0	0	0	0	0	0	0	8054	1102	38	3		3	KATNA1	6	149925943	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	3710641	149925943	21189124	57	169848											
CARD11	84433	broad.mit.edu	37	chr7	2968322	2968322	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgatgctgctgcggctcCgggggggctgcttcagacac	15	12	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2968322	A	A	2968322	3	1	224	1	0	0	0	0	1	0	0	0	2671	652	23	1	1852	1	CARD11	7	2968322	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08		2968322	156170341	58	169849											
SEMA3C	10512	broad.mit.edu	37	chr7	80447810	80447810	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agttagctatgttaacctgaGatcttgtatgataagtaaca	8	5	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	80447810	C	C	80447810	1	2	224	0	1	0	0	0	0	0	0	0	14139	957	33	4		4	SEMA3C	7	80447810	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	77479488	80447810	78690853	59	169850											
AKAP9	10142	broad.mit.edu	37	chr7	91712538	91712538	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	acttaagccaagttagggatCacctcgcagaggcaaaagag	11	9	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91712538	T	T	91712538	3	4	224	1	0	0	0	0	1	0	0	0	459	826	29	4	8345	4	AKAP9	7	91712538	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	11264728	91712538	67426125	60	169851											
ORAI2	80228	broad.mit.edu	37	chr7	102087127	102087127	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgagcaacatccacaacctGaactccatcagcgagtcccc	7	16	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102087127	A	A	102087127	2	1	224	1	0	0	0	0	0	0	0	1	11352	1277	45	4		4	ORAI2	7	102087127	Silent	SNP	G	TCGA-86-6562-01A-11D-1753-08	10374589	102087127	57051536	61	169852											
CADPS2	93664	broad.mit.edu	37	chr7	122091483	122091483	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gagtctctcttttatctcctCaaatctttctttttcttcca	2	12	7	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	122091483	G	G	122091483	3	3	224	1	0	0	0	0	1	0	0	0	2597	835	29	4	1765	4	CADPS2	7	122091483	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	20004356	122091483	37047180	62	169853											
SGCZ	137868	broad.mit.edu	37	chr8	14095019	14095019	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaacaacaacaacaacgAcaacaacaagaaccaaaaac	2	13	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14095019	G	G	14095019	1	3	224	0	1	0	0	0	0	0	0	0	14317	290	10	5		5	SGCZ	8	14095019	Intron	SNP	A	TCGA-86-6562-01A-11D-1753-08		14095019	132269003	63	169854											
XPO7	23039	broad.mit.edu	37	chr8	21847812	21847812	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatctgccttagagtttcGgcctgcttcacactttcctt	6	14	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21847812	A	A	21847812	1	1	224	0	1	0	0	0	0	0	0	0	17576	1131	39	4		4	XPO7	8	21847812	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	7752793	21847812	124516210	64	169855											
SORBS3	10174	broad.mit.edu	37	chr8	22426539	22426539	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccagggcttgtgtctggTgtttatatcttttctctgcc	9	12	3	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22426539	G	G	22426539	1	3	224	0	1	0	0	0	0	0	0	0	15043	1711	59	5		5	SORBS3	8	22426539	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	578727	22426539	123937483	65	169856											
HTRA4	203100	broad.mit.edu	37	chr8	38840082	38840082	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctcactgtgccgtaagcaTgtgtttgaatatgtctgggt	11	9	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38840082	A	A	38840082	1	1	224	0	1	0	0	0	0	0	0	0	7526	1479	51	5		5	HTRA4	8	38840082	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	16413543	38840082	107523940	66	169857											
RAD54B	25788	broad.mit.edu	37	chr8	95403999	95403999	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgtagtgctcctggtcgGcaaaagacaacattctctat	8	10	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95403999	A	A	95403999	2	1	224	1	0	0	0	0	0	0	0	1	13100	1195	42	4		4	RAD54B	8	95403999	Silent	SNP	G	TCGA-86-6562-01A-11D-1753-08	56563917	95403999	50960023	67	169858											
ASAP1	50807	broad.mit.edu	37	chr8	131149081	131149081	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagcacatgcaggaataaCtgttccaatgccaactgtga	9	10	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131149081	G	G	131149081	1	3	224	0	1	0	0	0	0	0	0	0	1014	580	20	4		4	ASAP1	8	131149081	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	35745082	131149081	15214941	68	169859											
VCP	7415	broad.mit.edu	37	chr9	35059603	35059603	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gccaggtctgaggatggcagGatcaatgatgtcaggccggt	16	8	3	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35059603	C	C	35059603	3	2	224	1	0	0	0	0	1	0	0	0	17267	1174	41	4	545	4	VCP	9	35059603	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08		35059603	106153828	69	169860											
TMEM2	23670	broad.mit.edu	37	chr9	74332812	74332812	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	actggctttaaaaaaaatctGaaaaataatacatcagtgtc	5	6	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74332812	T	T	74332812	1	4	224	0	1	0	0	0	0	0	0	0	16244	1305	45	3		3	TMEM2	9	74332812	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	39273209	74332812	66880619	70	169861											
TRPM6	140803	broad.mit.edu	37	chr9	77339635	77339635	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtggaatttatccttTcaggggaatagtcatttctt	9	6	3	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77339635	C	C	77339635	3	2	224	1	0	0	0	0	1	0	0	0	16715	1783	62	5	109	5	TRPM6	9	77339635	Missense_Mutation	SNP	T	TCGA-86-6562-01A-11D-1753-08	3006823	77339635	63873796	71	169862											
FOXB2	442425	broad.mit.edu	37	chr9	79635526	79635526	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtggccgcacgttggcgTcatggattcggtggccgccg	17	12	1	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	79635526	C	C	79635526	3	2	224	1	0	0	0	0	1	0	0	0	6051	1667	58	5	958	5	FOXB2	9	79635526	Missense_Mutation	SNP	T	TCGA-86-6562-01A-11D-1753-08	2295891	79635526	61577905	72	169863											
GABBR2	9568	broad.mit.edu	37	chr9	101052878	101052878	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccacccttacaggcccgaGaccatgactcggaaggaggg	12	14	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101052878	C	C	101052878	2	2	224	1	0	0	0	0	0	0	0	1	6216	929	33	4		4	GABBR2	9	101052878	Silent	SNP	G	TCGA-86-6562-01A-11D-1753-08	21417352	101052878	40160553	73	169864											
TOR1A	1861	broad.mit.edu	37	chr9	132584984	132584984	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctgacgaaatttttgCcggtgcctgtccacccgtgc	10	13	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132584984	T	T	132584984	3	4	224	1	0	0	0	0	1	0	0	0	16495	739	26	4	694	4	TOR1A	9	132584984	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	31532106	132584984	8628447	74	169865											
NRP1	8829	broad.mit.edu	37	chr10	33510591	33510591	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atttaaaggtttgcataaatCaaaacaagacaatcttcgac	5	7	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33510591	G	G	33510591	1	3	224	0	1	0	0	0	0	0	0	0	10755	841	29	4		4	NRP1	10	33510591	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08		33510591	102024156	75	169866											
GDF2	2658	broad.mit.edu	37	chr10	48416322	48416322	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgagtcccaccccagcGcgcatggtgcaagcggagac	13	15	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48416322	A	A	48416322	1	1	224	0	1	0	0	0	0	0	0	0	6378	1102	38	4		4	GDF2	10	48416322	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	14905731	48416322	87118425	76	169867											
POLR3A	11128	broad.mit.edu	37	chr10	79764733	79764733	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatgcctgctagatatagtTtgtactatatataaactatg	6	5	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79764733	A	A	79764733	1	1	224	0	1	0	0	0	0	0	0	0	12323	1856	64	5		5	POLR3A	10	79764733	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	31348411	79764733	55770014	77	169868											
PCGF5	84333	broad.mit.edu	37	chr10	93008617	93008617	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cacccttttatttacattacGaacctttttctctatatgag	3	10	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93008617	A	A	93008617	1	1	224	0	1	0	0	0	0	0	0	0	11671	1073	37	4		4	PCGF5	10	93008617	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	13243884	93008617	42526130	78	169869											
PDE6C	5146	broad.mit.edu	37	chr10	95418995	95418995	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcccatgtaaatgtccaccTaaagatctcaggcaacctca	6	13	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95418995	C	C	95418995	1	2	224	0	1	0	0	0	0	0	0	0	11741	1537	53	5		5	PDE6C	10	95418995	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	2410378	95418995	40115752	79	169870											
PPRC1	23082	broad.mit.edu	37	chr10	103901711	103901711	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtccttcctgcctacccCacgtactcagggttctgaag	9	15	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103901711	A	A	103901711	3	1	224	1	0	0	0	0	1	0	0	0	12511	594	21	2	3464	2	PPRC1	10	103901711	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	8482716	103901711	31633036	80	169871											
TACC2	10579	broad.mit.edu	37	chr10	123970013	123970013	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	actccttctctgccgtcttcGatgaagacaagccgatagcc	8	14	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123970013	A	A	123970013	3	1	224	1	0	0	0	0	1	0	0	0	15621	1058	37	4	6175	4	TACC2	10	123970013	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	20068302	123970013	11564734	81	169872											
DMBT1	1755	broad.mit.edu	37	chr10	124357584	124357584	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctacctctggacaaatgtTttttctgaaaatgataggat	7	7	3	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124357584	G	G	124357584	1	3	224	0	1	0	0	0	0	0	0	0	4617	1856	64	5		5	DMBT1	10	124357584	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	387571	124357584	11177163	82	169873											
FAM196A	642938	broad.mit.edu	37	chr10	128936283	128936283	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttaaaatccagctccaCactagaaaagagagagagtg	9	9	0	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128936283	A	A	128936283	3	1	224	1	0	0	0	0	1	0	0	0	5575	492	17	3	185	3	FAM196A	10	128936283	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	4578699	128936283	6598464	83	169874											
RIC8A	60626	broad.mit.edu	37	chr11	211339	211339	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcatcttcctagagaagcGtttgcacaaggtaggctggg	12	10	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	211339	A	A	211339	3	1	224	1	0	0	0	0	1	0	0	0	13464	1145	40	4	977	4	RIC8A	11	211339	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08		211339	134795177	84	169875											
MUC5B	727897	broad.mit.edu	37	chr11	1278885	1278885	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgtgcaaccgtcccggcttCgtaaccgtgaccaggccccg	11	18	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1278885	T	T	1278885	2	4	224	1	0	0	0	0	0	0	0	1	10073	883	31	4		4	MUC5B	11	1278885	Silent	SNP	C	TCGA-86-6562-01A-11D-1753-08	1067546	1278885	133727631	85	169876											
IGSF22	283284	broad.mit.edu	37	chr11	18737204	18737204	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctcacactccaggcatgCgcgactcctctctttcacac	6	18	3	0	rs142049851	by1000genomes	TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18737204	T	T	18737204	3	4	224	1	0	0	0	0	1	0	0	0	7670	768	27	4	2726	4	IGSF22	11	18737204	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	17458319	18737204	116269312	86	169877											
WT1	7490	broad.mit.edu	37	chr11	32456382	32456382	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tagcgacaggctccggctgtGccagtgaactggccggaaaa	14	11	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32456382	C	C	32456382	2	2	224	1	0	0	0	0	0	0	0	1	17535	1306	46	4		4	WT1	11	32456382	Silent	SNP	G	TCGA-86-6562-01A-11D-1753-08	13719178	32456382	102550134	87	169878											
TTC17	55761	broad.mit.edu	37	chr11	43427043	43427043	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaatccaaagaaatttatgaGaaattttgtttctttatcag	6	4	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43427043	A	A	43427043	1	1	224	0	1	0	0	0	0	0	0	0	16810	957	33	4		4	TTC17	11	43427043	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	10970661	43427043	91579473	88	169879											
OR5M1	390168	broad.mit.edu	37	chr11	56380559	56380559	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagtgaccagacagacacaGatgttcttggacatcctgga	10	9	1	4			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56380559	A	A	56380559	2	1	224	1	0	0	0	0	0	0	0	1	11266	932	33	4		4	OR5M1	11	56380559	Silent	SNP	G	TCGA-86-6562-01A-11D-1753-08	12953516	56380559	78625957	89	169880											
MS4A14	84689	broad.mit.edu	37	chr11	60152822	60152822	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcctcgactttccttctAtcattgccccacgtcacatt	5	15	3	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60152822	G	G	60152822	1	3	224	0	1	0	0	0	0	0	0	0	9952	464	16	5		5	MS4A14	11	60152822	Intron	SNP	A	TCGA-86-6562-01A-11D-1753-08	3772263	60152822	74853694	90	169881											
PPFIA1	8500	broad.mit.edu	37	chr11	70208128	70208128	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcctgccttggcctcccaGagagctgggattacaggtgt	12	13	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70208128	T	T	70208128	1	4	224	0	1	0	0	0	0	0	0	0	12405	957	33	3		3	PPFIA1	11	70208128	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	10055306	70208128	64798388	91	169882											
FCHSD2	9873	broad.mit.edu	37	chr11	72651866	72651866	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggagtgagctggatgCcactgtggggctcttagagt	17	7	1	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72651866	T	T	72651866	1	4	224	0	1	0	0	0	0	0	0	0	5847	754	26	4		4	FCHSD2	11	72651866	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	2443738	72651866	62354650	92	169883											
MRPL48	51642	broad.mit.edu	37	chr11	73562088	73562088	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaaagacccataaatttGtttacaggtttggctggcat	8	8	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73562088	T	T	73562088	1	4	224	0	1	0	0	0	0	0	0	0	9906	1392	48	3		3	MRPL48	11	73562088	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	910222	73562088	61444428	93	169884											
SORL1	6653	broad.mit.edu	37	chr11	121457112	121457112	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agagcgtatattggactaaaTcctttcatttcctcagtacc	6	10	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121457112	A	A	121457112	1	1	224	0	1	0	0	0	0	0	0	0	15048	1450	50	5		5	SORL1	11	121457112	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	47895024	121457112	13549404	94	169885											
TMEM225	338661	broad.mit.edu	37	chr11	123755144	123755144	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagagactgcagcctgaaCccacccatcaaagtacacct	6	15	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123755144	A	A	123755144	1	1	224	0	1	0	0	0	0	0	0	0	16270	522	18	3		3	TMEM225	11	123755144	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	2298032	123755144	11251372	95	169886											
B4GALNT3	283358	broad.mit.edu	37	chr12	665822	665822	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaaggccagcgcgtggtgCggctctcggagtatgtgtct	15	10	2	0	rs145153320	byFrequency	TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	665822	T	T	665822	3	4	224	1	0	0	0	0	1	0	0	0	1273	759	27	4	2228	4	B4GALNT3	12	665822	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08		665822	133186073	96	169887											
KCNA1	3736	broad.mit.edu	37	chr12	5021828	5021828	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagagcaggctcagttgctCcacgtcagttcccctaactt	9	13	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021828	T	T	5021828	2	4	224	1	0	0	0	0	0	0	0	1	8071	842	30	4		4	KCNA1	12	5021828	Silent	SNP	C	TCGA-86-6562-01A-11D-1753-08	4356006	5021828	128830067	97	169888											
CLEC1B	51266	broad.mit.edu	37	chr12	10147636	10147636	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtaagtgacccagctgCtgcttctataacccatagta	9	11	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10147636	T	T	10147636	1	4	224	0	1	0	0	0	0	0	0	0	3538	812	28	4		4	CLEC1B	12	10147636	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	5125808	10147636	123704259	98	169889											
LRMP	4033	broad.mit.edu	37	chr12	25260724	25260724	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgacaaattaccgattacCaaattctatttgtgttttcc	4	8	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25260724	A	A	25260724	1	1	224	0	1	0	0	0	0	0	0	0	9037	609	21	2		2	LRMP	12	25260724	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	15113088	25260724	108591171	99	169890											
TFCP2	7024	broad.mit.edu	37	chr12	51500952	51500952	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtaaattctgaccagttTggaagtgatgaatttttaag	10	3	1	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51500952	G	G	51500952	1	3	224	0	1	0	0	0	0	0	0	0	15918	1827	63	5		5	TFCP2	12	51500952	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	26240228	51500952	82350943	100	169891											
TFCP2	7024	broad.mit.edu	37	chr12	51501052	51501052	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtctcataggaaggctgAtatttctccttttcatgagg	10	7	3	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51501052	G	G	51501052	2	3	224	1	0	0	0	0	0	0	0	1	15918	340	12	5		5	TFCP2	12	51501052	Silent	SNP	A	TCGA-86-6562-01A-11D-1753-08	100	51501052	82350843	101	169892											
KRT71	112802	broad.mit.edu	37	chr12	52942007	52942007	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcatactgggtgcggacttCgtcaatgatgctgtccaggt	12	10	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52942007	T	T	52942007	3	4	224	1	0	0	0	0	1	0	0	0	8555	893	31	4	684	4	KRT71	12	52942007	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	1440955	52942007	80909888	102	169893											
ERBB3	2065	broad.mit.edu	37	chr12	56495860	56495860	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcctgctccctgtggcactCagggagcatttaatggcagc	11	13	1	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56495860	G	G	56495860	1	3	224	0	1	0	0	0	0	0	0	0	5250	841	29	4		4	ERBB3	12	56495860	3'UTR	SNP	C	TCGA-86-6562-01A-11D-1753-08	3553853	56495860	77356035	103	169894											
ACACB	32	broad.mit.edu	37	chr12	109698352	109698352	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagacaatacaaacagccCatcctgatctatatcccgcc	4	15	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109698352	A	A	109698352	2	1	224	1	0	0	0	0	0	0	0	1	107	581	21	2		2	ACACB	12	109698352	Silent	SNP	C	TCGA-86-6562-01A-11D-1753-08	53202492	109698352	24153543	104	169895											
ACACB	32	broad.mit.edu	37	chr12	109702190	109702190	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctggagaagggcgtcatatCtgtgagagccacagctgccg	15	10	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109702190	A	A	109702190	3	1	224	1	0	0	0	0	1	0	0	0	107	927	32	3	7135	3	ACACB	12	109702190	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	3838	109702190	24149705	105	169896											
SPPL3	121665	broad.mit.edu	37	chr12	121204115	121204115	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaagtaaatggcaccaaaTagagaagggcgggctgggcg	15	6	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121204115	C	C	121204115	3	2	224	1	0	0	0	0	1	0	0	0	15208	1406	49	5	128	5	SPPL3	12	121204115	Missense_Mutation	SNP	T	TCGA-86-6562-01A-11D-1753-08	11501925	121204115	12647780	106	169897											
PAN3	255967	broad.mit.edu	37	chr13	28855451	28855451	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttttaaaatgttttataGgaggttcaaaatggaagact	8	3	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28855451	T	T	28855451	5	4	224	1	0	0	0	0	0	0	1	0	11509	1014	35	2	2385	2	PAN3	13	28855451	Splice_Site	SNP	G	TCGA-86-6562-01A-11D-1753-08		28855451	86314427	107	169898											
COL4A1	1282	broad.mit.edu	37	chr13	110847348	110847348	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagacacaaccaccatttTaaaaaaatcaaaatttctta	1	9	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110847348	A	A	110847348	1	1	224	0	1	0	0	0	0	0	0	0	3721	1769	61	5		5	COL4A1	13	110847348	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	81991897	110847348	4322530	108	169899											
PARP2	10038	broad.mit.edu	37	chr14	20822935	20822935	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agttcactagatgggatcctAgtttggagtctgatctctgg	12	7	3	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20822935	T	T	20822935	1	4	224	0	1	0	0	0	0	0	0	0	11555	435	15	5		5	PARP2	14	20822935	Intron	SNP	A	TCGA-86-6562-01A-11D-1753-08		20822935	86526605	109	169900											
SUPT16H	11198	broad.mit.edu	37	chr14	21838698	21838698	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tatgttttaccagttcattaGacacgttttaccagtaacag	6	8	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21838698	C	C	21838698	1	2	224	0	1	0	0	0	0	0	0	0	15514	957	33	4		4	SUPT16H	14	21838698	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	1015763	21838698	85510842	110	169901											
AKAP6	9472	broad.mit.edu	37	chr14	33015676	33015676	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacacaaaagcaaaaaagGtcaagcctcctctccaagtc	5	12	2	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33015676	T	T	33015676	3	4	224	1	0	0	0	0	1	0	0	0	455	1261	44	3	1827	3	AKAP6	14	33015676	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	11176978	33015676	74333864	111	169902											
CTAGE5	4253	broad.mit.edu	37	chr14	39769038	39769038	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taatgattcacttgtgtgatGagttgcatttttaaaatttt	7	3	1	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39769038	T	T	39769038	1	4	224	0	1	0	0	0	0	0	0	0	4028	1305	45	3		3	CTAGE5	14	39769038	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	6753362	39769038	67580502	112	169903											
SYNE2	23224	broad.mit.edu	37	chr14	64685266	64685266	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcagtcgtccagagaggcaGagtatggtatttaagtcctt	13	7	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64685266	C	C	64685266	1	2	224	0	1	0	0	0	0	0	0	0	15565	957	33	4		4	SYNE2	14	64685266	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	24916228	64685266	42664274	113	169904											
SERPINA5	5104	broad.mit.edu	37	chr14	95056451	95056451	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacctcggagactgtggtGcgggtacccatgatgagccg	16	10	0	4	rs147867587	byFrequency	TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95056451	T	T	95056451	2	4	224	1	0	0	0	0	0	0	0	1	14205	1306	46	3		3	SERPINA5	14	95056451	Silent	SNP	G	TCGA-86-6562-01A-11D-1753-08	30371185	95056451	12293089	114	169905											
AHNAK2	113146	broad.mit.edu	37	chr14	105418451	105418451	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgacttccgccttggGgcttttcaggtccagcttgg	14	11	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105418451	A	A	105418451	3	1	224	1	0	0	0	0	1	0	0	0	415	1232	43	4	14054	4	AHNAK2	14	105418451	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	10362000	105418451	1931089	115	169906											
AQP9	366	broad.mit.edu	37	chr15	58467128	58467128	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcatagatggacttatgTcctttgctggtggaaaactg	10	7	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58467128	A	A	58467128	3	1	224	1	0	0	0	0	1	0	0	0	835	1667	58	5	402	5	AQP9	15	58467128	Missense_Mutation	SNP	T	TCGA-86-6562-01A-11D-1753-08		58467128	44064264	116	169907											
UACA	55075	broad.mit.edu	37	chr15	70960850	70960850	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctccttgaggagcttattatCcaaataaactttttcaattt	4	8	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70960850	G	G	70960850	3	3	224	1	0	0	0	0	1	0	0	0	16950	855	30	4	2093	4	UACA	15	70960850	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	12493722	70960850	31570542	117	169908											
UACA	55075	broad.mit.edu	37	chr15	70961012	70961012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggccttaacattctcaaGttctctctttaactgtctaa	4	11	4	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70961012	T	T	70961012	3	4	224	1	0	0	0	0	1	0	0	0	16950	1029	36	3	2255	3	UACA	15	70961012	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	162	70961012	31570380	118	169909											
TSC2	7249	broad.mit.edu	37	chr16	2106189	2106189	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgggactgagctcggtgctCcctgcaggatgatctgtctg	14	12	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2106189	T	T	2106189	1	4	224	0	1	0	0	0	0	0	0	0	16731	870	30	4		4	TSC2	16	2106189	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08		2106189	88248564	119	169910											
SEPT12	124404	broad.mit.edu	37	chr16	4829784	4829784	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taccacggcaaaagggattcGgtcctgggaaaggagaagac	14	8	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4829784	A	A	4829784	4	1	224	1	0	0	0	0	0	1	0	0	14175	1124	39	4	358	4	SEPT12	16	4829784	Nonsense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	2723595	4829784	85524969	120	169911											
PDXDC1	23042	broad.mit.edu	37	chr16	15116567	15116567	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtcatttgcagagtcaaCggttgcaggaaagtttgaag	12	5	2	2	rs151168975	by1000genomes	TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15116567	T	T	15116567	3	4	224	1	0	0	0	0	1	0	0	0	11790	527	19	4	1146	4	PDXDC1	16	15116567	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	10286783	15116567	75238186	121	169912											
BOLA2	552900	broad.mit.edu	37	chr16	29644619	29644619	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtactgggatcacaggcGtgagcctccgcgcccggcct	13	14	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29644619	A	A	29644619	1	1	224	0	1	0	0	0	0	0	0	0	1492	1160	40	4		4	BOLA2	16	29644619	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	14528052	29644619	60710134	122	169913											
DOK4	55715	broad.mit.edu	37	chr16	57513263	57513263	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcagccggagggcagccgCgtgccccacgcgccatgcct	15	18	0	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57513263	T	T	57513263	1	4	224	0	1	0	0	0	0	0	0	0	4739	783	27	4		4	DOK4	16	57513263	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	27868644	57513263	32841490	123	169914											
FHOD1	29109	broad.mit.edu	37	chr16	67265670	67265670	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcagggttggccagctggGcttcctcaatcttctgccgc	12	13	4	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67265670	A	A	67265670	3	1	224	1	0	0	0	0	1	0	0	0	5939	1203	42	4	1271	4	FHOD1	16	67265670	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	9752407	67265670	23089083	124	169915											
CNTNAP4	85445	broad.mit.edu	37	chr16	76555040	76555040	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tttttttcacaaaacaggatCattttggaattcagcttcct	5	8	3	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76555040	A	A	76555040	4	1	224	1	0	0	0	0	0	1	0	0	3681	838	29	3	2444	3	CNTNAP4	16	76555040	Nonsense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	9289370	76555040	13799713	125	169916											
NECAB2	54550	broad.mit.edu	37	chr16	84035346	84035346	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgataagctccccattttGggctagagctaggattaaca	9	8	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84035346	A	A	84035346	1	1	224	0	1	0	0	0	0	0	0	0	10400	1363	47	4		4	NECAB2	16	84035346	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	7480306	84035346	6319407	126	169917											
ITGAE	3682	broad.mit.edu	37	chr17	3704343	3704343	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtcaaggctgtagtctgCagacacctggctggagctga	13	10	2	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3704343	T	T	3704343	1	4	224	0	1	0	0	0	0	0	0	0	7955	725	25	4		4	ITGAE	17	3704343	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08		3704343	77490867	127	169918											
SPAG7	9552	broad.mit.edu	37	chr17	4871101	4871101	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccagtaggtccgccatcTtgggagtgactgagaggggg	17	9	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4871101	G	G	4871101	1	3	224	0	1	0	0	0	0	0	0	0	15099	1624	56	5		5	SPAG7	17	4871101	5'UTR	SNP	T	TCGA-86-6562-01A-11D-1753-08	1166758	4871101	76324109	128	169919											
TMEM220	388335	broad.mit.edu	37	chr17	10632268	10632268	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattaagcagggaggaggggTaaagacataaaaccgtgtgt	14	4	0	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10632268	A	A	10632268	1	1	224	0	1	0	0	0	0	0	0	0	16267	1653	57	5		5	TMEM220	17	10632268	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08	5761167	10632268	70562942	129	169920											
MYO15A	51168	broad.mit.edu	37	chr17	18063273	18063273	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggggaccatgaggtcatgCgggatgaatgttactgccaa	15	8	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18063273	T	T	18063273	3	4	224	1	0	0	0	0	1	0	0	0	10157	759	27	4	9542	4	MYO15A	17	18063273	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	7431005	18063273	63131937	130	169921											
SUPT6H	6830	broad.mit.edu	37	chr17	27004785	27004785	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatgaactagaagaagaagCtgactggatctacaggaatg	12	5	1	6			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27004785	G	G	27004785	3	3	224	1	0	0	0	0	1	0	0	0	15518	797	28	4	976	4	SUPT6H	17	27004785	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	8941512	27004785	54190425	131	169922											
SSH2	85464	broad.mit.edu	37	chr17	27993938	27993938	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atccatttgaccaaggatcaCtatcatttcattgtctataa	4	9	4	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27993938	T	T	27993938	3	4	224	1	0	0	0	0	1	0	0	0	15303	565	20	4	3397	4	SSH2	17	27993938	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	989153	27993938	53201272	132	169923											
ERBB2	2064	broad.mit.edu	37	chr17	37880997	37880998	+	In_Frame_Ins	INS	-	TCT	TCT													ggaagcatacgtgatggctgINSgtgtgggctccccatatgtc					rs28933369		TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	TCT	37880998	TCT	TCT	37880997	7	5	224	1	0	1	1	0	0	0	0	0	5248	1348	47	0	2404	0	ERBB2	17	37880997	In_Frame_Ins	INS	-	TCGA-86-6562-01A-11D-1753-08	9887059	37880997	43314213	133	169924											
KRT26	353288	broad.mit.edu	37	chr17	38925115	38925115	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtttttttttttttttGcaagttaatctttacctttc	5	5	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38925115	T	T	38925115	1	4	224	0	1	0	0	0	0	0	0	0	8534	1334	46	3		3	KRT26	17	38925115	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	1044118	38925115	42270095	134	169925											
GOSR2	9570	broad.mit.edu	37	chr17	45006837	45006837	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctttcctgactgaagcGctgttgattactcctgtctc	8	11	2	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45006837	A	A	45006837	1	1	224	0	1	0	0	0	0	0	0	0	6642	1102	38	4		4	GOSR2	17	45006837	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	6081722	45006837	36188373	135	169926											
TUBD1	51174	broad.mit.edu	37	chr17	57968194	57968194	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	actgtgggccacacctacctCcattctcctcctcactgaag	6	17	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57968194	G	G	57968194	3	3	224	1	0	0	0	0	1	0	0	0	16888	855	30	4	1223	4	TUBD1	17	57968194	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	12961357	57968194	23227016	136	169927											
ABCA6	23460	broad.mit.edu	37	chr17	67101833	67101833	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tatttatttagtaagacattCcacaagtatttgttgagtgc	7	5	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67101833	T	T	67101833	1	4	224	0	1	0	0	0	0	0	0	0	36	870	30	4		4	ABCA6	17	67101833	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	9133639	67101833	14093377	137	169928											
TMEM104	54868	broad.mit.edu	37	chr17	72815930	72815930	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaccgttcaccttctttgaCgtccagaagaccaagtacct	8	13	2	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72815930	T	T	72815930	2	4	224	1	0	0	0	0	0	0	0	1	16141	535	19	4		4	TMEM104	17	72815930	Silent	SNP	C	TCGA-86-6562-01A-11D-1753-08	5714097	72815930	8379280	138	169929											
ANKRD30B	374860	broad.mit.edu	37	chr18	14752603	14752603	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcaatggccatgcagAagtagtaacatttctggtag	11	7	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14752603	T	T	14752603	3	4	224	1	0	0	0	0	1	0	0	0	659	246	9	5	266	5	ANKRD30B	18	14752603	Missense_Mutation	SNP	A	TCGA-86-6562-01A-11D-1753-08		14752603	63324645	139	169930											
RIT2	6014	broad.mit.edu	37	chr18	40503402	40503402	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatttaccatgggaccacCatgacttattagaaaaatca	5	9	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40503402	T	T	40503402	1	4	224	0	1	0	0	0	0	0	0	0	13498	609	21	4		4	RIT2	18	40503402	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	25750799	40503402	37573846	140	169931											
PSTPIP2	9050	broad.mit.edu	37	chr18	43577777	43577778	+	Missense_Mutation	DNP	GC	AG	AG													cttatccagggtgccgatgtGcagcatgtatgctttgtctg							TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	43577778	AG	AG	43577777	3	1	224	1	0	0	0	0	1	0	0	0	12828	1319	46	4	448	4	PSTPIP2	18	43577777	Missense_Mutation	DNP	GC	TCGA-86-6562-01A-11D-1753-08	3074375	43577777	34499471	141	169932											
SERPINB7	8710	broad.mit.edu	37	chr18	61465845	61465845	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttttcaaaaggcaaaatCaagaacgtgattggtgaagg	10	4	2	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61465845	G	G	61465845	3	3	224	1	0	0	0	0	1	0	0	0	14219	816	29	4	480	4	SERPINB7	18	61465845	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	17888068	61465845	16611403	142	169933											
UHRF1	29128	broad.mit.edu	37	chr19	4930710	4930710	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accccgttgggatgccagacTtccctcattcctcacaggtc	8	16	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4930710	G	G	4930710	1	3	224	0	1	0	0	0	0	0	0	0	17093	1624	56	5		5	UHRF1	19	4930710	Intron	SNP	T	TCGA-86-6562-01A-11D-1753-08		4930710	54198273	143	169934											
CRB3	92359	broad.mit.edu	37	chr19	6466369	6466370	+	Intron	DEL	TG	-	-													aaaagtggcagatgtgtgtaTgtgtgtgtgtgtgttgtggg					rs141004533	by1000genomes	TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6466370	-	-	6466369	6	5	224	0	1	1	0	1	0	0	0	0	3882	1479	51	0		0	CRB3	19	6466369	Intron	DEL	TG	TCGA-86-6562-01A-11D-1753-08	1535659	6466369	52662614	144	169935											
FCGBP	8857	broad.mit.edu	37	chr19	40368940	40368940	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccccagctctggccctctGcctccctctctctcatccca	6	22	4	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40368940	A	A	40368940	1	1	224	0	1	0	0	0	0	0	0	0	5835	1334	46	4		4	FCGBP	19	40368940	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	33902571	40368940	18760043	145	169936											
PSG6	5675	broad.mit.edu	37	chr19	43593410	43593410	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatctgttgttatggtgtcGaaaatgttggcgagttctga	13	5	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43593410	A	A	43593410	1	1	224	0	1	0	0	0	0	0	0	0	12765	1073	37	4		4	PSG6	19	43593410	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	3224470	43593410	15535573	146	169937											
SYT5	6861	broad.mit.edu	37	chr19	55687001	55687001	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggccgcctccaggaaaagCggaaggggtcggtccctagt	16	11	0	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55687001	T	T	55687001	1	4	224	0	1	0	0	0	0	0	0	0	15596	783	27	4		4	SYT5	19	55687001	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	12093591	55687001	3441982	147	169938											
ZNF548	147694	broad.mit.edu	37	chr19	57910809	57910809	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cagccttgttaaacattggaGaaatcacactggagaaaggc	10	8	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57910809	A	A	57910809	3	1	224	1	0	0	0	0	1	0	0	0	18107	942	33	4	1204	4	ZNF548	19	57910809	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08	2223808	57910809	1218174	148	169939											
SPTLC3	55304	broad.mit.edu	37	chr20	13029532	13029532	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgaaagttcacaattttaGgtatcatagtatatctgtaa	7	4	3	1	rs6041804		TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13029532	A	A	13029532	1	1	224	0	1	0	0	0	0	0	0	0	15243	1015	35	4		4	SPTLC3	20	13029532	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08		13029532	49995988	149	169940											
SYCP2	10388	broad.mit.edu	37	chr20	58490678	58490678	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagagaaatattctaggcaCataaacttagaagcctaatt	6	6	1	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58490678	T	T	58490678	1	4	224	0	1	0	0	0	0	0	0	0	15551	493	17	4		4	SYCP2	20	58490678	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	45461146	58490678	4534842	150	169941											
RTEL1	51750	broad.mit.edu	37	chr20	62325860	62325860	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtagctgactcctgaaccGtgtgcagcctacgacttggt	12	11	0	2			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62325860	A	A	62325860	1	1	224	0	1	0	0	0	0	0	0	0	13831	1160	40	4		4	RTEL1	20	62325860	Intron	SNP	G	TCGA-86-6562-01A-11D-1753-08	3835182	62325860	699660	151	169942											
PRDM15	63977	broad.mit.edu	37	chr21	43274737	43274737	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttggcatagaaggccGcataccacacgcgcagctcg	10	14	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43274737	A	A	43274737	3	1	224	1	0	0	0	0	1	0	0	0	12562	1087	38	4	3029	4	PRDM15	21	43274737	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08		43274737	4855158	152	169943											
SMTN	6525	broad.mit.edu	37	chr22	31492754	31492754	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcgggaacggcggctgcagGaggcacggggccggccaggg	22	11	0	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31492754	C	C	31492754	3	2	224	1	0	0	0	0	1	0	0	0	14928	1175	41	4	1947	4	SMTN	22	31492754	Missense_Mutation	SNP	G	TCGA-86-6562-01A-11D-1753-08		31492754	19811812	153	169944											
SSX7	280658	broad.mit.edu	37	chrX	52682498	52682498	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaccagccctaggtctccTtgcaaaggcgtcgtctccgt	10	15	2	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52682498	C	C	52682498	3	2	224	1	0	0	0	0	1	0	0	0	15327	1608	56	5	565	5	SSX7	23	52682498	Missense_Mutation	SNP	T	TCGA-86-6562-01A-11D-1753-08		52682498	102588062	154	169945											
ATRX	546	broad.mit.edu	37	chrX	76874343	76874343	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcactctgacatctaccatGgtagaatctgcacactgacc	6	13	4	3			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76874343	T	T	76874343	2	4	224	1	0	0	0	0	0	0	0	1	1212	1335	47	2		2	ATRX	23	76874343	Silent	SNP	G	TCGA-86-6562-01A-11D-1753-08	24191845	76874343	78396217	155	169946											
GPRASP2	114928	broad.mit.edu	37	chrX	101970073	101970073	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaaaacggaggctcaaggAatcacaggggccaggcccaa	12	13	2	0			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101970073	G	G	101970073	2	3	224	1	0	0	0	0	0	0	0	1	6789	233	9	5		5	GPRASP2	23	101970073	Silent	SNP	A	TCGA-86-6562-01A-11D-1753-08	25095730	101970073	53300487	156	169947											
WDR44	54521	broad.mit.edu	37	chrX	117480481	117480481	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctataaatggcgtcggaaagCgacaccgaggaattctatga	11	8	1	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117480481	A	A	117480481	3	1	224	1	0	0	0	0	1	0	0	0	17423	767	27	3	17	3	WDR44	23	117480481	Missense_Mutation	SNP	C	TCGA-86-6562-01A-11D-1753-08	15510408	117480481	37790079	157	169948											
RHOXF1	158800	broad.mit.edu	37	chrX	119246766	119246766	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcctctcaaattgctttttCaagtgtactgacccgcactt	6	12	2	1			TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119246766	G	G	119246766	1	3	224	0	1	0	0	0	0	0	0	0	13456	841	29	4		4	RHOXF1	23	119246766	Intron	SNP	C	TCGA-86-6562-01A-11D-1753-08	1766285	119246766	36023794	158	169949											
KIAA1751	85452	broad.mit.edu	37	chr1	1895158	1895158	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgctgtccctgcaccgCgtccctccctgtctgagccg	9	20	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1895158	T	T	1895158	1	4	225	0	1	0	0	0	0	0	0	0	8326	783	27	4		4	KIAA1751	1	1895158	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08		1895158	247355463	1	169950											
MMEL1	79258	broad.mit.edu	37	chr1	2527973	2527973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtggaaggctggccccgCgtgggccatggatgaggggc	19	11	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2527973	A	A	2527973	1	1	225	0	1	0	0	0	0	0	0	0	9739	783	27	3		3	MMEL1	1	2527973	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	632815	2527973	246722648	2	169951											
AJAP1	55966	broad.mit.edu	37	chr1	4832325	4832325	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccgtccccctaccccaaaCtctttctcttccagctgtgc	5	20	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4832325	T	T	4832325	1	4	225	0	1	0	0	0	0	0	0	0	438	580	20	4		4	AJAP1	1	4832325	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2304352	4832325	244418296	3	169952											
KLHL21	9903	broad.mit.edu	37	chr1	6655584	6655584	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgtcccattcgttcctcgtCgggttgtacacgtccacctc	8	15	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6655584	A	A	6655584	2	1	225	1	0	0	0	0	0	0	0	1	8447	871	31	3		3	KLHL21	1	6655584	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	1823259	6655584	242595037	4	169953											
SLC45A1	50651	broad.mit.edu	37	chr1	8390292	8390292	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggaggaggctttggatacGtggtcggcggaatccactgg	17	8	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8390292	A	A	8390292	3	1	225	1	0	0	0	0	1	0	0	0	14754	1145	40	4	753	4	SLC45A1	1	8390292	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1734708	8390292	240860329	5	169954											
MTOR	2475	broad.mit.edu	37	chr1	11204846	11204846	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgcattccaaactaattaCtgcacgaacaatccaaaaga	4	11	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11204846	A	A	11204846	1	1	225	0	1	0	0	0	0	0	0	0	10048	580	20	3		3	MTOR	1	11204846	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2814554	11204846	238045775	6	169955											
LOC440563	440563	broad.mit.edu	37	chr1	13183710	13183710	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctccttatcatattgaaCgaaggcaaagcccttatgaa	6	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13183710	T	T	13183710	3	4	225	1	0	0	0	0	1	0	0	0	8962	536	19	4	722	4	LOC440563	1	13183710	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1978864	13183710	236066911	7	169956											
SH2D5	400745	broad.mit.edu	37	chr1	21050589	21050589	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aactcacaggcctcccgagcCgacagctgcagctgggtctc	11	16	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21050589	T	T	21050589	2	4	225	1	0	0	0	0	0	0	0	1	14350	639	23	4		4	SH2D5	1	21050589	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	7866879	21050589	228200032	8	169957											
HSPG2	3339	broad.mit.edu	37	chr1	22183716	22183716	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggcgaaagggggtcatGggtggggctcagagacccca	18	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22183716	A	A	22183716	1	1	225	0	1	0	0	0	0	0	0	0	7500	1363	47	4		4	HSPG2	1	22183716	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1133127	22183716	227066905	9	169958											
C1orf38	9473	broad.mit.edu	37	chr1	28202990	28202990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggcatgccaggcagcaGgcaccatgtgcaaaggcatg	15	11	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28202990	T	T	28202990	1	4	225	0	1	0	0	0	0	0	0	0	2061	1015	35	2		2	C1orf38	1	28202990	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	6019274	28202990	221047631	10	169959											
PHACTR4	65979	broad.mit.edu	37	chr1	28818172	28818172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccttcagctcagtcaaaGgccaactgtcgctgaactcc	7	14	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28818172	T	T	28818172	3	4	225	1	0	0	0	0	1	0	0	0	11907	1000	35	2	1981	2	PHACTR4	1	28818172	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	615182	28818172	220432449	11	169960											
YARS	8565	broad.mit.edu	37	chr1	33282783	33282783	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcatttccaacccccaggCctgacctgcaggttccgggt	11	16	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33282783	A	A	33282783	1	1	225	0	1	0	0	0	0	0	0	0	17594	754	26	3		3	YARS	1	33282783	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	4464611	33282783	215967838	12	169961											
MACF1	23499	broad.mit.edu	37	chr1	39852909	39852909	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccagcacccagcagttcCagcaaatgtttgatgagttg	10	10	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39852909	T	T	39852909	4	4	225	1	0	0	0	0	0	1	0	0	9232	595	21	4	14570	4	MACF1	1	39852909	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	6570126	39852909	209397712	13	169962											
HEYL	26508	broad.mit.edu	37	chr1	40098421	40098421	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagctgatttttcagggCtgggggacagtctccccggc	14	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40098421	A	A	40098421	1	1	225	0	1	0	0	0	0	0	0	0	7147	812	28	3		3	HEYL	1	40098421	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	245512	40098421	209152200	14	169963											
FAM183A	440585	broad.mit.edu	37	chr1	43616395	43616395	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcagggaactcatgtttTaatctgaacttgtgaagctg	12	6	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43616395	G	G	43616395	1	3	225	0	1	0	0	0	0	0	0	0	5556	1769	61	5		5	FAM183A	1	43616395	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	3517974	43616395	205634226	15	169964											
HECTD3	79654	broad.mit.edu	37	chr1	45473082	45473082	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcggaccctaggtggtgcaGacctgggtgaagactgcatt	15	9	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45473082	A	A	45473082	1	1	225	0	1	0	0	0	0	0	0	0	7108	957	33	4		4	HECTD3	1	45473082	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1856687	45473082	203777539	16	169965											
LRP8	7804	broad.mit.edu	37	chr1	53726386	53726386	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacttccctgaaatctcccCtgatctgtcctgtctatgga	7	13	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53726386	G	G	53726386	1	3	225	0	1	0	0	0	0	0	0	0	9050	696	24	4		4	LRP8	1	53726386	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	8253304	53726386	195524235	17	169966											
TNNI3K	51086	broad.mit.edu	37	chr1	74701674	74701674	+	Intron	DEL	G	-	-													caatcagtaatttaaattaaGtattgtagaatctagaataa							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	74701674	-	-	74701674	6	5	225	0	1	1	0	1	0	0	0	0	16452	1044	36	0		0	TNNI3K	1	74701674	Intron	DEL	G	TCGA-91-6828-01A-11D-1855-08	20975288	74701674	174548947	18	169967											
SLC44A5	204962	broad.mit.edu	37	chr1	75677102	75677102	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacatgggccttcaccatctCacctttcagttatccaccga	6	15	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75677102	G	G	75677102	1	3	225	0	1	0	0	0	0	0	0	0	14753	841	29	4		4	SLC44A5	1	75677102	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	975428	75677102	173573519	19	169968											
ASB17	127247	broad.mit.edu	37	chr1	76387904	76387904	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagtactattgttaagacaAtgttgatagggtttttttct	9	3	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76387904	G	G	76387904	3	3	225	1	0	0	0	0	1	0	0	0	1025	101	4	5	353	5	ASB17	1	76387904	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	710802	76387904	172862717	20	169969											
LPHN2	23266	broad.mit.edu	37	chr1	82456564	82456564	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccaacagagactctctttAtacaagcatgcccaatctta	4	14	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82456564	T	T	82456564	3	4	225	1	0	0	0	0	1	0	0	0	9003	449	16	5	4021	5	LPHN2	1	82456564	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	6068660	82456564	166794057	21	169970											
ZNF644	84146	broad.mit.edu	37	chr1	91403192	91403192	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaattcctttcttctcccaTccttttatttttaagaagtt	3	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91403192	A	A	91403192	3	1	225	1	0	0	0	0	1	0	0	0	18187	1435	50	5	457	5	ZNF644	1	91403192	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	8946628	91403192	157847429	22	169971											
GFI1	2672	broad.mit.edu	37	chr1	92941768	92941768	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgaggcttctcacctgTggggatgggagggggagggg	21	6	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92941768	A	A	92941768	1	1	225	0	1	0	0	0	0	0	0	0	6403	1711	59	5		5	GFI1	1	92941768	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1538576	92941768	156308853	23	169972											
SASS6	163786	broad.mit.edu	37	chr1	100572478	100572478	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatacttacacttttcattAttttttagaagttgtttgct	4	6	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100572478	G	G	100572478	2	3	225	1	0	0	0	0	0	0	0	1	13962	446	16	5		5	SASS6	1	100572478	Silent	SNP	A	TCGA-91-6828-01A-11D-1855-08	7630710	100572478	148678143	24	169973											
COL11A1	1301	broad.mit.edu	37	chr1	103467449	103467449	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaaaacaaacatgttcaCcaggctttacgagaacaaca	6	10	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103467449	A	A	103467449	1	1	225	0	1	0	0	0	0	0	0	0	3699	522	18	3		3	COL11A1	1	103467449	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2894971	103467449	145783172	25	169974											
FNDC7	163479	broad.mit.edu	37	chr1	109273273	109273273	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtggaaataaatctccaattCtttttcttttatcccattta	3	8	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109273273	A	A	109273273	1	1	225	0	1	0	0	0	0	0	0	0	6031	928	32	3		3	FNDC7	1	109273273	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5805824	109273273	139977348	26	169975											
MYBPHL	343263	broad.mit.edu	37	chr1	109840136	109840136	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtcagcacgttgggcttctCggatgaagaggatggagtct	15	7	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109840136	A	A	109840136	3	1	225	1	0	0	0	0	1	0	0	0	10109	884	31	3	750	3	MYBPHL	1	109840136	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	566863	109840136	139410485	27	169976											
GSTM2	2946	broad.mit.edu	37	chr1	110210771	110210771	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtactggaacatccgcGgggtgagccagggtccgctg	18	10	0	1	rs140199111		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110210771	T	T	110210771	1	4	225	0	1	0	0	0	0	0	0	0	6904	1116	39	1		1	GSTM2	1	110210771	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	370635	110210771	139039850	28	169977											
GSTM5	2949	broad.mit.edu	37	chr1	110257469	110257469	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttgtggggaagatggctGcttgcctgtggccagcctgg	17	8	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110257469	T	T	110257469	1	4	225	0	1	0	0	0	0	0	0	0	6907	1334	46	3		3	GSTM5	1	110257469	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	46698	110257469	138993152	29	169978											
ADORA3	140	broad.mit.edu	37	chr1	112028429	112028429	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagagatgattcccaaaccCgtgatcagtatgcaaatgat	8	9	1	4	rs138501072		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112028429	T	T	112028429	2	4	225	1	0	0	0	0	0	0	0	1	329	639	23	4		4	ADORA3	1	112028429	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	1770960	112028429	137222192	30	169979											
FAM19A3	284467	broad.mit.edu	37	chr1	113269262	113269262	+	Nonstop_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaccaggtcacacgataGctcttgggggtcacggcctg	12	13	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113269262	T	T	113269262	4	4	225	1	0	0	0	0	0	0	0	0	5580	975	34	3	484	3	FAM19A3	1	113269262	Nonstop_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1240833	113269262	135981359	31	169980											
ZNF697	90874	broad.mit.edu	37	chr1	120166700	120166700	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cggattggtcatcctcttccCcacggacagaaacgccttct	8	15	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	120166700	G	G	120166700	3	3	225	1	0	0	0	0	1	0	0	0	18227	623	22	4	1375	4	ZNF697	1	120166700	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	6897438	120166700	129083921	32	169981											
PDE4DIP	9659	broad.mit.edu	37	chr1	144916339	144916339	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagctatcatgttaaagatgCaatttttgggtctcattaat	7	5	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144916339	T	T	144916339	1	4	225	0	1	0	0	0	0	0	0	0	11737	725	25	4		4	PDE4DIP	1	144916339	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	24749639	144916339	104334282	33	169982											
NBPF14	25832	broad.mit.edu	37	chr1	148012507	148012507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagaaaggtactcacctccCacgtcaagagaaaagccaac	7	12	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148012507	A	A	148012507	2	1	225	1	0	0	0	0	0	0	0	1	10289	581	21	2		2	NBPF14	1	148012507	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	3096168	148012507	101238114	34	169983											
PRPF3	9129	broad.mit.edu	37	chr1	150321586	150321586	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gacttgaatattatttgtttAgaacctgaatctcaagtcta	6	6	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150321586	T	T	150321586	1	4	225	0	1	0	0	0	0	0	0	0	12671	435	15	5		5	PRPF3	1	150321586	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	2309079	150321586	98929035	35	169984											
VPS72	6944	broad.mit.edu	37	chr1	151149152	151149152	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttctggcgcaaggctcGgggcccagagccagggaggg	17	10	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151149152	T	T	151149152	2	4	225	1	0	0	0	0	0	0	0	1	17344	1124	39	1		1	VPS72	1	151149152	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	827566	151149152	98101469	36	169985											
THEM5	284486	broad.mit.edu	37	chr1	151820280	151820280	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggacatgtaaagcttctGgtcctcaatcttgtccagtt	9	10	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151820280	A	A	151820280	4	1	225	1	0	0	0	0	0	1	0	0	15982	1357	47	4	117	4	THEM5	1	151820280	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	671128	151820280	97430341	37	169986											
HRNR	388697	broad.mit.edu	37	chr1	152190973	152190973	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaagccagaagagtgaccGgagccagactcatatgggcc	12	12	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152190973	T	T	152190973	2	4	225	1	0	0	0	0	0	0	0	1	7426	1103	39	1		1	HRNR	1	152190973	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	370693	152190973	97059648	38	169987											
FLG	2312	broad.mit.edu	37	chr1	152279834	152279834	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctgcttgcacttctggAtcctgagtgcccatgggagg	13	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152279834	T	T	152279834	3	4	225	1	0	0	0	0	1	0	0	0	5979	333	12	5	4661	5	FLG	1	152279834	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	88861	152279834	96970787	39	169988											
FLG	2312	broad.mit.edu	37	chr1	152286323	152286323	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgtctgcagagtgccCatgactggctctgtcttcat	12	11	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152286323	A	A	152286323	3	1	225	1	0	0	0	0	1	0	0	0	5979	594	21	2	11150	2	FLG	1	152286323	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	6489	152286323	96964298	40	169989											
FLG2	388698	broad.mit.edu	37	chr1	152328507	152328507	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggactgacctgagccCgatccatattggccaaagcc	10	14	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152328507	A	A	152328507	2	1	225	1	0	0	0	0	0	0	0	1	5980	639	23	1		1	FLG2	1	152328507	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	42184	152328507	96922114	41	169990											
GATAD2B	57459	broad.mit.edu	37	chr1	153784365	153784365	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatacaactttgatatgaTagaatgttaagcgggggcaa	12	4	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153784365	A	A	153784365	1	1	225	0	1	0	0	0	0	0	0	0	6323	1421	49	5		5	GATAD2B	1	153784365	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1455858	153784365	95466256	42	169991											
UBE2Q1	55585	broad.mit.edu	37	chr1	154530853	154530853	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggcaggcgctggcaatgcgGaagcgctcgtggccgcggtg	19	11	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154530853	A	A	154530853	2	1	225	1	0	0	0	0	0	0	0	1	16995	1165	41	4		4	UBE2Q1	1	154530853	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	746488	154530853	94719768	43	169992											
CLK2	1196	broad.mit.edu	37	chr1	155237843	155237843	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgattttctctagcacgTtgatctcaagtcgagctgct	8	10	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155237843	C	C	155237843	3	2	225	1	0	0	0	0	1	0	0	0	3569	1725	60	5	902	5	CLK2	1	155237843	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	706990	155237843	94012778	44	169993											
RHBG	57127	broad.mit.edu	37	chr1	156348094	156348094	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctttggtgcctacttcGggctcgtcctttcgcgggtt	11	13	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156348094	T	T	156348094	3	4	225	1	0	0	0	0	1	0	0	0	13433	1116	39	1	591	1	RHBG	1	156348094	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1110251	156348094	92902527	45	169994											
CD1D	912	broad.mit.edu	37	chr1	158152851	158152851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacgagacatggtatctccGagcaaccctggatgtggtgg	14	9	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158152851	T	T	158152851	3	4	225	1	0	0	0	0	1	0	0	0	3007	1058	37	3	805	3	CD1D	1	158152851	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1804757	158152851	91097770	46	169995											
CD1E	913	broad.mit.edu	37	chr1	158325708	158325708	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggattctacccaaagccCgtgtgggtgatgtggatgcg	14	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325708	A	A	158325708	2	1	225	1	0	0	0	0	0	0	0	1	3008	639	23	1		1	CD1E	1	158325708	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	172857	158325708	90924913	47	169996											
SPTA1	6708	broad.mit.edu	37	chr1	158587787	158587787	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaacgaattcttccataaTaatataataaagcaaacatg	3	7	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158587787	A	A	158587787	1	1	225	0	1	0	0	0	0	0	0	0	15234	1421	49	5		5	SPTA1	1	158587787	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	262079	158587787	90662834	48	169997											
OR6K6	128371	broad.mit.edu	37	chr1	158725166	158725166	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcctccttgtgcttcctgaGattgcatggatttccacctt	7	12	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158725166	T	T	158725166	3	4	225	1	0	0	0	0	1	0	0	0	11298	933	33	3	563	3	OR6K6	1	158725166	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	137379	158725166	90525455	49	169998											
PYHIN1	149628	broad.mit.edu	37	chr1	158906615	158906615	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggccacttattcacataGgcatacatcttcttttaaat	5	9	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158906615	T	T	158906615	1	4	225	0	1	0	0	0	0	0	0	0	12973	1015	35	2		2	PYHIN1	1	158906615	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	181449	158906615	90344006	50	169999											
CADM3	57863	broad.mit.edu	37	chr1	159170717	159170717	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatatttcatctagaggcGcctgcccacttcctgcgccc	9	15	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159170717	A	A	159170717	1	1	225	0	1	0	0	0	0	0	0	0	2594	1102	38	4		4	CADM3	1	159170717	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	264102	159170717	90079904	51	170000											
IGSF8	93185	broad.mit.edu	37	chr1	160063849	160063849	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttgtcctcgccaggcaGcccagtgccagctcctgccc	11	18	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160063849	T	T	160063849	2	4	225	1	0	0	0	0	0	0	0	1	7674	958	34	3		3	IGSF8	1	160063849	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	893132	160063849	89186772	52	170001											
RGS4	5999	broad.mit.edu	37	chr1	163039313	163039313	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtctgccggcttcttgcttGaggaggtaagattgctttca	13	8	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	163039313	C	C	163039313	3	2	225	1	0	0	0	0	1	0	0	0	13416	1281	45	4	336	4	RGS4	1	163039313	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2975464	163039313	86211308	53	170002											
KIFAP3	22920	broad.mit.edu	37	chr1	170003437	170003437	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aatttttaaaaaagaaaaaaGaacaaaaccatcccacccat	2	9	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170003437	A	A	170003437	1	1	225	0	1	0	0	0	0	0	0	0	8381	957	33	4		4	KIFAP3	1	170003437	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	6964124	170003437	79247184	54	170003											
C1orf129	80133	broad.mit.edu	37	chr1	170967188	170967188	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagggaatattaaagaatAtctttcatctgggaggtgca	10	4	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170967188	T	T	170967188	1	4	225	0	1	0	0	0	0	0	0	0	2016	464	16	5		5	C1orf129	1	170967188	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	963751	170967188	78283433	55	170004											
BAT2L2	23215	broad.mit.edu	37	chr1	171504670	171504670	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggtctcaacctcggccGgctgtattatctggctattt	10	11	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171504670	T	T	171504670	2	4	225	1	0	0	0	0	0	0	0	1	1326	1103	39	1		1	BAT2L2	1	171504670	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	537482	171504670	77745951	56	170005											
PAPPA2	60676	broad.mit.edu	37	chr1	176671933	176671933	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gagagagagagagagagagaGagagagggagggagagagag	23	0	0	8			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176671933	T	T	176671933	1	4	225	0	1	0	0	0	0	0	0	0	11527	957	33	3		3	PAPPA2	1	176671933	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	5167263	176671933	72578688	57	170006											
ASTN1	460	broad.mit.edu	37	chr1	176845701	176845701	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacatcatccaccacgggGcatggggtcttcacgatcac	10	13	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176845701	A	A	176845701	2	1	225	1	0	0	0	0	0	0	0	1	1068	1195	42	4		4	ASTN1	1	176845701	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	173768	176845701	72404920	58	170007											
ASTN1	460	broad.mit.edu	37	chr1	176927584	176927584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaagctcttgctgagggGcaaccacatgccctccccaa	8	16	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176927584	T	T	176927584	3	4	225	1	0	0	0	0	1	0	0	0	1068	1203	42	3	2311	3	ASTN1	1	176927584	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	81883	176927584	72323037	59	170008											
ABL2	27	broad.mit.edu	37	chr1	179102625	179102625	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcatgatcaggtctctacCtacttctccagcttcgcctc	5	15	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179102625	T	T	179102625	1	4	225	0	1	0	0	0	0	0	0	0	93	696	24	4		4	ABL2	1	179102625	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2175041	179102625	70147996	60	170009											
C1orf14	81626	broad.mit.edu	37	chr1	182925010	182925010	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagctgtatagccctgctGtgcggaaggtcatgagtagg	15	8	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182925010	T	T	182925010	1	4	225	0	1	0	0	0	0	0	0	0	2020	1392	48	3		3	C1orf14	1	182925010	5'Flank	SNP	G	TCGA-91-6828-01A-11D-1855-08	3822385	182925010	66325611	61	170010											
FAM5C	339479	broad.mit.edu	37	chr1	190067324	190067324	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggagagtttatttacacGgtctctgatctctagtagtt	11	6	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067324	T	T	190067324	3	4	225	1	0	0	0	0	1	0	0	0	5645	1116	39	1	179	1	FAM5C	1	190067324	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	7142314	190067324	59183297	62	170011											
ZBTB41	360023	broad.mit.edu	37	chr1	197145660	197145660	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cctttcaggtatttaaaaagGattttcgaactagcattaca	6	7	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197145660	T	T	197145660	1	4	225	0	1	0	0	0	0	0	0	0	17669	1189	41	3		3	ZBTB41	1	197145660	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	7078336	197145660	52104961	63	170012											
PKP1	5317	broad.mit.edu	37	chr1	201293709	201293709	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctgcacagagtgatgGgtaaggtccctctctctcct	10	13	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201293709	T	T	201293709	3	4	225	1	0	0	0	0	1	0	0	0	12079	1246	43	2	1939	2	PKP1	1	201293709	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	4148049	201293709	47956912	64	170013											
LAD1	3898	broad.mit.edu	37	chr1	201355939	201355939	+	Frame_Shift_Del	DEL	A	-	-													tgccgtcttctttggcatggAggacttctccaagactgggg							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	201355939	-	-	201355939	7	5	225	1	0	1	0	1	0	0	0	0	8671	304	11	0	1035	0	LAD1	1	201355939	Frame_Shift_Del	DEL	A	TCGA-91-6828-01A-11D-1855-08	62230	201355939	47894682	65	170014											
OPTC	26254	broad.mit.edu	37	chr1	203472585	203472585	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagttgcaccagagcagGcagagctggtagggacagct	14	11	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203472585	T	T	203472585	1	4	225	0	1	0	0	0	0	0	0	0	10982	1218	42	3		3	OPTC	1	203472585	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2116646	203472585	45778036	66	170015											
SNRPE	6635	broad.mit.edu	37	chr1	203834119	203834119	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataggtatactcatttaaaaTggtttgaatgtgattttctt	7	3	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203834119	A	A	203834119	1	1	225	0	1	0	0	0	0	0	0	0	14981	1479	51	5		5	SNRPE	1	203834119	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	361534	203834119	45416502	67	170016											
C1orf186	440712	broad.mit.edu	37	chr1	206239199	206239199	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttttttgggtacagaccaGgagtccatgggtcttgagga	14	7	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	206239199	T	T	206239199	1	4	225	0	1	0	0	0	0	0	0	0	2040	1015	35	2		2	C1orf186	1	206239199	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	2405080	206239199	43011422	68	170017											
C4BPA	722	broad.mit.edu	37	chr1	207297621	207297621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacctacagctgtgaccccCgcttctcactcttgggccat	7	17	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207297621	A	A	207297621	3	1	225	1	0	0	0	0	1	0	0	0	2272	652	23	1	634	1	C4BPA	1	207297621	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1058422	207297621	41953000	69	170018											
CR1	1378	broad.mit.edu	37	chr1	207758146	207758146	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattggggagagcaccatcCgctgcacaagtgaccctcat	10	13	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207758146	A	A	207758146	3	1	225	1	0	0	0	0	1	0	0	0	3872	652	23	1	5585	1	CR1	1	207758146	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	460525	207758146	41492475	70	170019											
CR1L	1379	broad.mit.edu	37	chr1	207870916	207870916	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggacaacttttcacccGggcaggaagtgttctacagc	10	11	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207870916	T	T	207870916	3	4	225	1	0	0	0	0	1	0	0	0	3873	1116	39	1	953	1	CR1L	1	207870916	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	112770	207870916	41379705	71	170020											
LAMB3	3914	broad.mit.edu	37	chr1	209797143	209797143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggcatgcccaccacggCagtgcccatgcccggggtta	15	14	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209797143	A	A	209797143	1	1	225	0	1	0	0	0	0	0	0	0	8684	725	25	3		3	LAMB3	1	209797143	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1926227	209797143	39453478	72	170021											
SERTAD4	56256	broad.mit.edu	37	chr1	210412803	210412803	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagaacctctggcaaaccGcatgtcatttgtcatatctg	9	10	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210412803	A	A	210412803	1	1	225	0	1	0	0	0	0	0	0	0	14236	1102	38	4		4	SERTAD4	1	210412803	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	615660	210412803	38837818	73	170022											
SERTAD4	56256	broad.mit.edu	37	chr1	210414899	210414899	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttttttttttttggtttGtagaccatctcaatttttga	5	5	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210414899	T	T	210414899	1	4	225	0	1	0	0	0	0	0	0	0	14236	1392	48	3		3	SERTAD4	1	210414899	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2096	210414899	38835722	74	170023											
USH2A	7399	broad.mit.edu	37	chr1	216592004	216592004	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaatctgcccatctactGtcttttctataacacacctt	2	14	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	216592004	A	A	216592004	3	1	225	1	0	0	0	0	1	0	0	0	17162	1377	48	4	15399	4	USH2A	1	216592004	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	6177105	216592004	32658617	75	170024											
OBSCN	84033	broad.mit.edu	37	chr1	228557766	228557766	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcgaagacgccaaagacttCatcaaggctacgctgcagag	11	11	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228557766	T	T	228557766	2	4	225	1	0	0	0	0	0	0	0	1	10907	825	29	4		4	OBSCN	1	228557766	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	11965762	228557766	20692855	76	170025											
TRIM17	51127	broad.mit.edu	37	chr1	228602296	228602296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgggtcaccttgtccccCtggatgcctcctccccggcc	9	19	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	228602296	A	A	228602296	1	1	225	0	1	0	0	0	0	0	0	0	16617	696	24	2		2	TRIM17	1	228602296	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	44530	228602296	20648325	77	170026											
TRIM17	51127	broad.mit.edu	37	chr1	228602832	228602832	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actctggagagagttggaggGagcagcccgatgatctgggc	17	8	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228602832	T	T	228602832	1	4	225	0	1	0	0	0	0	0	0	0	16617	1189	41	3		3	TRIM17	1	228602832	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	536	228602832	20647789	78	170027											
HEATR1	55127	broad.mit.edu	37	chr1	236761272	236761272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcctttagctaacggcactCcagattgctgttattgatgg	9	9	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	236761272	A	A	236761272	3	1	225	1	0	0	0	0	1	0	0	0	7094	855	30	3	6089	3	HEATR1	1	236761272	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	8158440	236761272	12489349	79	170028											
RYR2	6262	broad.mit.edu	37	chr1	237789031	237789031	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attagagggcgtctgctatcCctggtagaaaaggtgacata	12	7	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237789031	A	A	237789031	2	1	225	1	0	0	0	0	0	0	0	1	13880	610	22	2		2	RYR2	1	237789031	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	1027759	237789031	11461590	80	170029											
RYR2	6262	broad.mit.edu	37	chr1	237837535	237837535	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtaaaagtacacataCcctaagtacacactcttttc	4	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237837535	T	T	237837535	1	4	225	0	1	0	0	0	0	0	0	0	13880	522	18	4		4	RYR2	1	237837535	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	48504	237837535	11413086	81	170030											
NLRP3	114548	broad.mit.edu	37	chr1	247592928	247592928	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccagtttttgccggggccTcttttcagttctgagcacca	9	12	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247592928	G	G	247592928	3	3	225	1	0	0	0	0	1	0	0	0	10573	1551	54	5	2212	5	NLRP3	1	247592928	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	9755393	247592928	1657693	82	170031											
OR11L1	391189	broad.mit.edu	37	chr1	248005039	248005039	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacataggggagtgcagtcGcaggccctggctcaccacgg	15	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248005039	A	A	248005039	4	1	225	1	0	0	0	0	0	1	0	0	11024	1095	38	4	812	4	OR11L1	1	248005039	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	412111	248005039	1245582	83	170032											
OR2L3	391192	broad.mit.edu	37	chr1	248224863	248224863	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatctatagcctgaggaacAaggaggtgatgggggccctg	15	8	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248224863	C	C	248224863	3	2	225	1	0	0	0	0	1	0	0	0	11102	131	5	5	882	5	OR2L3	1	248224863	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	219824	248224863	1025758	84	170033											
OR2M5	127059	broad.mit.edu	37	chr1	248308490	248308490	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaactctgacttcatccTcctgggaatcttcaatcaca	4	14	6	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248308490	C	C	248308490	3	2	225	1	0	0	0	0	1	0	0	0	11107	1551	54	5	43	5	OR2M5	1	248308490	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	83627	248308490	942131	85	170034											
MYT1L	23040	broad.mit.edu	37	chr2	1893159	1893159	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggacatgggctccagagGggtcaggatggggcagcagc	21	8	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1893159	T	T	1893159	3	4	225	1	0	0	0	0	1	0	0	0	10201	1232	43	2	1226	2	MYT1L	2	1893159	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08		1893159	241306214	86	170035											
MYT1L	23040	broad.mit.edu	37	chr2	1913923	1913923	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcccctgctgctgtagGgacatgccctgagcgggtgt	14	14	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1913923	A	A	1913923	1	1	225	0	1	0	0	0	0	0	0	0	10201	1247	43	4		4	MYT1L	2	1913923	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	20764	1913923	241285450	87	170036											
KIDINS220	57498	broad.mit.edu	37	chr2	8891840	8891840	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaaggtaaattctgcatgtCacctgaagttacttatacaa	7	7	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8891840	T	T	8891840	1	4	225	0	1	0	0	0	0	0	0	0	8341	841	29	4		4	KIDINS220	2	8891840	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	6977917	8891840	234307533	88	170037											
LPIN1	23175	broad.mit.edu	37	chr2	11964655	11964655	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcgtgtcgataagtaggcGgtctgctccttgaggttgta	14	7	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11964655	T	T	11964655	1	4	225	0	1	0	0	0	0	0	0	0	9005	1131	39	1		1	LPIN1	2	11964655	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	3072815	11964655	231234718	89	170038											
NBAS	51594	broad.mit.edu	37	chr2	15330452	15330452	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caagtgctgaaattcagcctCgtggtgactagattccagga	11	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15330452	A	A	15330452	4	1	225	1	0	0	0	0	0	1	0	0	10280	893	31	3	623	3	NBAS	2	15330452	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3365797	15330452	227868921	90	170039											
NBAS	51594	broad.mit.edu	37	chr2	15496520	15496520	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggattagaacctgtccccGcctttcttctgggttctcac	8	13	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15496520	T	T	15496520	2	4	225	1	0	0	0	0	0	0	0	1	10280	1086	38	3		3	NBAS	2	15496520	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	166068	15496520	227702853	91	170040											
NBAS	51594	broad.mit.edu	37	chr2	15608666	15608666	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttattttactctgcatatAaaggaagaaacagaggaatt	7	5	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15608666	G	G	15608666	1	3	225	0	1	0	0	0	0	0	0	0	10280	377	13	5		5	NBAS	2	15608666	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	112146	15608666	227590707	92	170041											
LCLAT1	253558	broad.mit.edu	37	chr2	30748669	30748669	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgtactagagtgctccCcacccctgatagatacctaa	7	13	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30748669	A	A	30748669	1	1	225	0	1	0	0	0	0	0	0	0	8749	638	22	2		2	LCLAT1	2	30748669	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	15140003	30748669	212450704	93	170042											
MEMO1	51072	broad.mit.edu	37	chr2	32116847	32116847	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgaatccaattataccAgtcgcctttggaaatgtacc	8	9	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32116847	G	G	32116847	1	3	225	0	1	0	0	0	0	0	0	0	9564	203	7	5		5	MEMO1	2	32116847	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	1368178	32116847	211082526	94	170043											
QPCT	25797	broad.mit.edu	37	chr2	37587074	37587074	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagtgaattctagaatccTtggaggaatgagaaggccat	12	6	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	37587074	G	G	37587074	1	3	225	0	1	0	0	0	0	0	0	0	12982	1624	56	5		5	QPCT	2	37587074	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	5470227	37587074	205612299	95	170044											
SFRS7	6432	broad.mit.edu	37	chr2	38978477	38978477	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagctgacacacaccttcAcccgccaagagtcccggcgg	9	16	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38978477	C	C	38978477	1	2	225	0	1	0	0	0	0	0	0	0	14295	174	6	5		5	SFRS7	2	38978477	5'UTR	SNP	A	TCGA-91-6828-01A-11D-1855-08	1391403	38978477	204220896	96	170045											
MTA3	57504	broad.mit.edu	37	chr2	42936104	42936104	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagtctgcagtgaagaccCgccaagctttcttccttcat	7	13	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42936104	A	A	42936104	3	1	225	1	0	0	0	0	1	0	0	0	10004	652	23	1	1447	1	MTA3	2	42936104	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3957627	42936104	200263269	97	170046											
MSH6	2956	broad.mit.edu	37	chr2	48033436	48033436	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtcgtacattattttcaaCtcactaccattcattagtag	4	9	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48033436	G	G	48033436	3	3	225	1	0	0	0	0	1	0	0	0	9968	565	20	4	3770	4	MSH6	2	48033436	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5097332	48033436	195165937	98	170047											
USP34	9736	broad.mit.edu	37	chr2	61415909	61415909	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatcacgttagggggggaTgtgggaagttaattttgttt	15	2	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61415909	C	C	61415909	1	2	225	0	1	0	0	0	0	0	0	0	17192	1479	51	5		5	USP34	2	61415909	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	13382473	61415909	181783464	99	170048											
DGUOK	1716	broad.mit.edu	37	chr2	74177857	74177857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctacctccaggcttctcccCaggtaacactgaacctacaa	5	16	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74177857	A	A	74177857	3	1	225	1	0	0	0	0	1	0	0	0	4515	595	21	2	603	2	DGUOK	2	74177857	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	12761948	74177857	169021516	100	170049											
WDR54	84058	broad.mit.edu	37	chr2	74650614	74650614	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatattcagtacaggctgTgtttgcccggggaattgctg	12	8	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74650614	G	G	74650614	3	3	225	1	0	0	0	0	1	0	0	0	17433	1696	59	5	376	5	WDR54	2	74650614	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	472757	74650614	168548759	101	170050											
REG3G	130120	broad.mit.edu	37	chr2	79254330	79254330	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcccctctctgttacctcTcaaggtactgttgttgccca	6	16	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79254330	A	A	79254330	1	1	225	0	1	0	0	0	0	0	0	0	13321	1566	54	5		5	REG3G	2	79254330	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	4603716	79254330	163945043	102	170051											
LRRTM1	347730	broad.mit.edu	37	chr2	80529975	80529975	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgagccacgaggctagggCacacacgttgcgcccgcaat	13	13	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80529975	A	A	80529975	3	1	225	1	0	0	0	0	1	0	0	0	9126	710	25	3	602	3	LRRTM1	2	80529975	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1275645	80529975	162669398	103	170052											
RETSAT	54884	broad.mit.edu	37	chr2	85577737	85577737	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggctccagagagagagagaCagagaactggatggacttgg	16	6	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85577737	G	G	85577737	1	3	225	0	1	0	0	0	0	0	0	0	13346	493	17	4		4	RETSAT	2	85577737	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5047762	85577737	157621636	104	170053											
PROM2	150696	broad.mit.edu	37	chr2	95953925	95953925	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcctgtgggtccaggtgTctctgcatcacctgcctcat	11	14	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95953925	A	A	95953925	1	1	225	0	1	0	0	0	0	0	0	0	12662	1682	58	5		5	PROM2	2	95953925	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	10376188	95953925	147245448	105	170054											
ANKRD36B	57730	broad.mit.edu	37	chr2	98129589	98129589	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttaaatgaaagagatggtAtaagtaatattaataagagt	9	0	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98129589	G	G	98129589	1	3	225	0	1	0	0	0	0	0	0	0	666	464	16	5		5	ANKRD36B	2	98129589	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	2175664	98129589	145069784	106	170055											
ANKRD36B	57730	broad.mit.edu	37	chr2	98171639	98171640	+	Intron	DNP	TC	CA	CA													atcaataaagaaagtatgttTcatggactatacagttacta							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	98171640	CA	CA	98171639	1	2	225	0	1	0	0	0	0	0	0	0	666	1798	62	5		5	ANKRD36B	2	98171639	Intron	DNP	TC	TCGA-91-6828-01A-11D-1855-08	42050	98171639	145027734	107	170056											
ACTR1B	10120	broad.mit.edu	37	chr2	98277062	98277062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtccgatgaagaggtccCcctccagggctccagccatc	11	15	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98277062	A	A	98277062	3	1	225	1	0	0	0	0	1	0	0	0	210	623	22	2	1005	2	ACTR1B	2	98277062	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	105423	98277062	144922311	108	170057											
ST6GAL2	84620	broad.mit.edu	37	chr2	107460276	107460276	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgctgcttcccctgcaccGgcaggagcctcctggtctcc	10	20	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107460276	A	A	107460276	3	1	225	1	0	0	0	0	1	0	0	0	15340	1116	39	4	1538	4	ST6GAL2	2	107460276	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	9183214	107460276	135739097	109	170058											
SAP130	79595	broad.mit.edu	37	chr2	128712558	128712558	+	Splice_Site	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtattctatggacggacttAccagaaactggcctcatgat	9	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	128712558	C	C	128712558	5	2	225	1	0	0	0	0	0	0	1	0	13942	405	14	5	773	5	SAP130	2	128712558	Splice_Site	SNP	A	TCGA-91-6828-01A-11D-1855-08	21252282	128712558	114486815	110	170059											
TMEM163	81615	broad.mit.edu	37	chr2	135214206	135214206	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacttccaaaaagaaaccAgatgttcagttaaatattgg	6	6	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135214206	T	T	135214206	1	4	225	0	1	0	0	0	0	0	0	0	16201	203	7	5		5	TMEM163	2	135214206	3'UTR	SNP	A	TCGA-91-6828-01A-11D-1855-08	6501648	135214206	107985167	111	170060											
LRP1B	53353	broad.mit.edu	37	chr2	142238044	142238044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggataaatgaacacatttGttggtaccaaggcaagcaat	10	6	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142238044	T	T	142238044	3	4	225	1	0	0	0	0	1	0	0	0	9042	1368	48	3	13891	3	LRP1B	2	142238044	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	7023838	142238044	100961329	112	170061											
LYPD6	130574	broad.mit.edu	37	chr2	150325382	150325382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagattcttactccccCgtgaaggctgtcttttgatt	9	10	2	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150325382	A	A	150325382	1	1	225	0	1	0	0	0	0	0	0	0	9202	667	23	1		1	LYPD6	2	150325382	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	8087338	150325382	92873991	113	170062											
MARCH7	64844	broad.mit.edu	37	chr2	160623733	160623733	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgttctggcttcatatTtacacttcccattcttatcc	4	12	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160623733	G	G	160623733	1	3	225	0	1	0	0	0	0	0	0	0	9398	1856	64	5		5	MARCH7	2	160623733	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	10298351	160623733	82575640	114	170063											
DCAF17	80067	broad.mit.edu	37	chr2	172314473	172314473	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgatatctgtctttcccCccgccagatttttgggaacg	10	11	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172314473	T	T	172314473	1	4	225	0	1	0	0	0	0	0	0	0	4302	638	22	4		4	DCAF17	2	172314473	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	11690740	172314473	70884900	115	170064											
DLX2	1746	broad.mit.edu	37	chr2	172966194	172966194	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcgcgagccccacctgaGtctgggtgaggcccagagag	17	12	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	172966194	T	T	172966194	3	4	225	1	0	0	0	0	1	0	0	0	4611	1029	36	3	413	3	DLX2	2	172966194	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	651721	172966194	70233179	116	170065											
TTC30A	92104	broad.mit.edu	37	chr2	178483345	178483345	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcccagcagctgcaccgcctCggcgtagcgggcatcgcgga	15	16	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178483345	T	T	178483345	3	4	225	1	0	0	0	0	1	0	0	0	16824	893	31	4	1916	4	TTC30A	2	178483345	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5517151	178483345	64716028	117	170066											
PRKRA	8575	broad.mit.edu	37	chr2	179297099	179297099	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taagcctccatggtatactaCaccactcgcaatctttgttt	5	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179297099	G	G	179297099	1	3	225	0	1	0	0	0	0	0	0	0	12630	493	17	4		4	PRKRA	2	179297099	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	813754	179297099	63902274	118	170067											
DFNB59	494513	broad.mit.edu	37	chr2	179320856	179320856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcactgtctgtgcatgctgGaattcgaggggaagcaatgc	13	9	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179320856	T	T	179320856	3	4	225	1	0	0	0	0	1	0	0	0	4496	1174	41	3	537	3	DFNB59	2	179320856	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	23757	179320856	63878517	119	170068											
TTN	7273	broad.mit.edu	37	chr2	179592313	179592313	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaatcaaatttgcacaccTgtcacaagcaacatcgtagt	7	10	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179592313	A	A	179592313	2	1	225	1	0	0	0	0	0	0	0	1	16861	1594	55	5		5	TTN	2	179592313	Silent	SNP	T	TCGA-91-6828-01A-11D-1855-08	271457	179592313	63607060	120	170069											
PMS1	5378	broad.mit.edu	37	chr2	190738322	190738322	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaattcttaatgctatattAaacagaaatgcaaaggaagt	7	4	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190738322	T	T	190738322	3	4	225	1	0	0	0	0	1	0	0	0	12237	359	13	5	2616	5	PMS1	2	190738322	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	11146009	190738322	52461051	121	170070											
PLCL1	5334	broad.mit.edu	37	chr2	198949108	198949108	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtttaaagaaatccagaaGagcaaggaaaaactaaccac	7	7	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198949108	T	T	198949108	3	4	225	1	0	0	0	0	1	0	0	0	12134	933	33	3	873	3	PLCL1	2	198949108	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	8210786	198949108	44250265	122	170071											
PLCL1	5334	broad.mit.edu	37	chr2	198950297	198950297	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	accttcacacgggctggtttCttcaaaacgggggatgtggt	13	9	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	198950297	G	G	198950297	3	3	225	1	0	0	0	0	1	0	0	0	12134	913	32	4	2062	4	PLCL1	2	198950297	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1189	198950297	44249076	123	170072											
NIF3L1	60491	broad.mit.edu	37	chr2	201756947	201756947	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcattctctcctaccatcCgcctatcttccgacccatga	3	19	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201756947	A	A	201756947	3	1	225	1	0	0	0	0	1	0	0	0	10511	652	23	1	283	1	NIF3L1	2	201756947	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2806650	201756947	41442426	124	170073											
SUMO1	7341	broad.mit.edu	37	chr2	203084621	203084621	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtatcggcctcttctacctCtaacagatgcatacacagta	6	12	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203084621	A	A	203084621	1	1	225	0	1	0	0	0	0	0	0	0	15505	928	32	3		3	SUMO1	2	203084621	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1327674	203084621	40114752	125	170074											
MDH1B	130752	broad.mit.edu	37	chr2	207621721	207621721	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttctcttgagcaattaccAtcatcagttcagtcgtcatg	8	10	5	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207621721	C	C	207621721	3	2	225	1	0	0	0	0	1	0	0	0	9502	217	8	5	1278	5	MDH1B	2	207621721	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	4537100	207621721	35577652	126	170075											
IDH1	3417	broad.mit.edu	37	chr2	209103826	209103826	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttaatgcaagcagccaagtCcttggtcatgaagccagcct	9	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209103826	A	A	209103826	3	1	225	1	0	0	0	0	1	0	0	0	7564	855	30	3	129	3	IDH1	2	209103826	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1482105	209103826	34095547	127	170076											
IDH1	3417	broad.mit.edu	37	chr2	209104696	209104696	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccatctggacaaaccagCacgctggtcatcatgccgag	10	13	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209104696	A	A	209104696	2	1	225	1	0	0	0	0	0	0	0	1	7564	697	25	3		3	IDH1	2	209104696	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	870	209104696	34094677	128	170077											
IDH1	3417	broad.mit.edu	37	chr2	209116370	209116370	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaacaacgtagtgtttataTaaacaacgtagtgactacta	6	6	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209116370	A	A	209116370	1	1	225	0	1	0	0	0	0	0	0	0	7564	1421	49	5		5	IDH1	2	209116370	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	11674	209116370	34083003	129	170078											
MAP2	4133	broad.mit.edu	37	chr2	210560407	210560408	+	Frame_Shift_Ins	INS	-	T	T													ttgccgtcaaattgtcagtgINSgaaataccttgcccacctgc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	210560408	T	T	210560407	7	5	225	1	0	1	1	0	0	0	0	0	9327	1335	47	0	3527	0	MAP2	2	210560407	Frame_Shift_Ins	INS	-	TCGA-91-6828-01A-11D-1855-08	1444037	210560407	32638966	130	170079											
ERBB4	2066	broad.mit.edu	37	chr2	212495101	212495101	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacactgaacagaattttacTtggattaaataattgaacat	6	5	0	3	rs146865683		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	212495101	A	A	212495101	1	1	225	0	1	0	0	0	0	0	0	0	5251	1624	56	5		5	ERBB4	2	212495101	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1934694	212495101	30704272	131	170080											
ABCA12	26154	broad.mit.edu	37	chr2	215820145	215820145	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaggcatggtggctcacaCctgtaatcctaacactttag	9	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	215820145	A	A	215820145	1	1	225	0	1	0	0	0	0	0	0	0	30	522	18	3		3	ABCA12	2	215820145	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	3325044	215820145	27379228	132	170081											
CCDC108	255101	broad.mit.edu	37	chr2	219890792	219890792	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtggtgctcaaagccagcGaaatagctgtggcctcgtgc	13	10	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219890792	A	A	219890792	2	1	225	1	0	0	0	0	0	0	0	1	2769	1049	37	4		4	CCDC108	2	219890792	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	4070647	219890792	23308581	133	170082											
SPEG	10290	broad.mit.edu	37	chr2	220329126	220329126	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacatcaggcccctgggccCtgggactgagttcttgcccc	12	16	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220329126	A	A	220329126	1	1	225	0	1	0	0	0	0	0	0	0	15154	696	24	2		2	SPEG	2	220329126	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	438334	220329126	22870247	134	170083											
SP140	11262	broad.mit.edu	37	chr2	231157280	231157280	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcatcacaaattgggtggctCtagatccagtgtggtgagtg	14	7	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231157280	A	A	231157280	1	1	225	0	1	0	0	0	0	0	0	0	15076	928	32	3		3	SP140	2	231157280	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	10828154	231157280	12042093	135	170084											
ALPP	250	broad.mit.edu	37	chr2	233246046	233246046	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctatgtgctcaaggacggCgcccggccggatgttaccga	15	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233246046	T	T	233246046	2	4	225	1	0	0	0	0	0	0	0	1	548	755	27	4		4	ALPP	2	233246046	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	2088766	233246046	9953327	136	170085											
UGT1A7	54577	broad.mit.edu	37	chr2	234590853	234590853	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggatcaggaccgggagttCatggtttttgccgatgctcg	15	8	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234590853	T	T	234590853	2	4	225	1	0	0	0	0	0	0	0	1	17076	825	29	4		4	UGT1A7	2	234590853	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	1344807	234590853	8608520	137	170086											
SPP2	6694	broad.mit.edu	37	chr2	234967454	234967454	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcagaaatgcattgatcaCactctgaaactttatttttg	5	8	3	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234967454	T	T	234967454	1	4	225	0	1	0	0	0	0	0	0	0	15205	493	17	4		4	SPP2	2	234967454	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	376601	234967454	8231919	138	170087											
IQCA1	79781	broad.mit.edu	37	chr2	237308223	237308223	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgacgagggtccatgccGcgcaggcccagtcctggtcc	14	16	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237308223	A	A	237308223	1	1	225	0	1	0	0	0	0	0	0	0	7872	1102	38	4		4	IQCA1	2	237308223	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2340769	237308223	5891150	139	170088											
COL6A3	1293	broad.mit.edu	37	chr2	238234070	238234070	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgtatttgaacgtcttcCttatctgaggatacacttta	8	7	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	238234070	T	T	238234070	1	4	225	0	1	0	0	0	0	0	0	0	3733	696	24	4		4	COL6A3	2	238234070	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	925847	238234070	4965303	140	170089											
COL6A3	1293	broad.mit.edu	37	chr2	238261228	238261228	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaggaccagctgggccCtgaggaaggaaaagaccatc	13	12	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	238261228	A	A	238261228	5	1	225	1	0	0	0	0	0	0	1	0	3733	695	24	2	2919	2	COL6A3	2	238261228	Splice_Site	SNP	C	TCGA-91-6828-01A-11D-1855-08	27158	238261228	4938145	141	170090											
HDAC4	9759	broad.mit.edu	37	chr2	239974838	239974838	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctcctcatctggtctgtgGatcccgcaagagaaggagat	13	10	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239974838	A	A	239974838	1	1	225	0	1	0	0	0	0	0	0	0	7076	1189	41	4		4	HDAC4	2	239974838	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1713610	239974838	3224535	142	170091											
HDAC4	9759	broad.mit.edu	37	chr2	239988418	239988418	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctctggggtcttcctacCtcgtttcccagcaaggcaga	11	13	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	239988418	A	A	239988418	3	1	225	1	0	0	0	0	1	0	0	0	7076	695	24	2	282	2	HDAC4	2	239988418	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	13580	239988418	3210955	143	170092											
GPR35	2859	broad.mit.edu	37	chr2	241569993	241569993	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacccaccgacgtggggcaGgcagaggccacccgcaaggc	14	17	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241569993	A	A	241569993	2	1	225	1	0	0	0	0	0	0	0	1	6755	991	35	4		4	GPR35	2	241569993	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	1581575	241569993	1629380	144	170093											
AQP12B	653437	broad.mit.edu	37	chr2	241622061	241622061	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtcaggcccaaagtccCcagcccagggcccgagctcg	13	17	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241622061	A	A	241622061	3	1	225	1	0	0	0	0	1	0	0	0	827	623	22	2	741	2	AQP12B	2	241622061	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	52068	241622061	1577312	145	170094											
HDLBP	3069	broad.mit.edu	37	chr2	242175999	242175999	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgactgggccttggcGgggggtggaggggggcacat	21	9	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242175999	T	T	242175999	1	4	225	0	1	0	0	0	0	0	0	0	7092	1131	39	1		1	HDLBP	2	242175999	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	553938	242175999	1023374	146	170095											
EDEM1	9695	broad.mit.edu	37	chr3	5247048	5247048	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgccctcaccttaccacCtctcctagtttgtcagtcat	4	17	5	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5247048	G	G	5247048	1	3	225	0	1	0	0	0	0	0	0	0	4951	696	24	4		4	EDEM1	3	5247048	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08		5247048	192775382	147	170096											
SATB1	6304	broad.mit.edu	37	chr3	18393372	18393372	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtgtattgttatctctTgctaaaaagcctatggttag	10	6	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18393372	G	G	18393372	1	3	225	0	1	0	0	0	0	0	0	0	13965	1827	63	5		5	SATB1	3	18393372	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	13146324	18393372	179629058	148	170097											
SCN11A	11280	broad.mit.edu	37	chr3	38991610	38991610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgatttcggtagaatgggtCcaagtcttccagaggctttc	11	8	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38991610	A	A	38991610	3	1	225	1	0	0	0	0	1	0	0	0	14026	855	30	3	5235	3	SCN11A	3	38991610	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	20598238	38991610	159030820	149	170098											
CX3CR1	1524	broad.mit.edu	37	chr3	39307362	39307362	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaacagcgtctggatgatTctgaagtagcaataactcat	9	7	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39307362	G	G	39307362	3	3	225	1	0	0	0	0	1	0	0	0	4108	1780	62	5	432	5	CX3CR1	3	39307362	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	315752	39307362	158715068	150	170099											
NKTR	4820	broad.mit.edu	37	chr3	42675154	42675154	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacctgtggtccgcccagaaGagattcctccagtgcctgag	11	13	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42675154	T	T	42675154	4	4	225	1	0	0	0	0	0	1	0	0	10543	943	33	3	890	3	NKTR	3	42675154	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3367792	42675154	155347276	151	170100											
FYCO1	79443	broad.mit.edu	37	chr3	46014653	46014653	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaactgaacctcagtcagctCatagagttggcccacaatgt	8	11	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46014653	A	A	46014653	4	1	225	1	0	0	0	0	0	1	0	0	6185	835	29	3	4022	3	FYCO1	3	46014653	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3339499	46014653	152007777	152	170101											
CACNA2D3	55799	broad.mit.edu	37	chr3	54420819	54420819	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggtaactgattatagtttGagttaaattgttttgtgtgt	10	2	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54420819	T	T	54420819	1	4	225	0	1	0	0	0	0	0	0	0	2576	1305	45	3		3	CACNA2D3	3	54420819	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	8406166	54420819	143601611	153	170102											
DNASE1L3	1776	broad.mit.edu	37	chr3	58183597	58183597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccgtggtgtcctcttggtCcccgatcagccaaacaaacc	8	16	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58183597	A	A	58183597	3	1	225	1	0	0	0	0	1	0	0	0	4703	855	30	3	274	3	DNASE1L3	3	58183597	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3762778	58183597	139838833	154	170103											
ADAMTS9	56999	broad.mit.edu	37	chr3	64640245	64640245	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagatacgcacagagaactCacctaaggtatcacatttgt	8	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64640245	A	A	64640245	1	1	225	0	1	0	0	0	0	0	0	0	273	841	29	3		3	ADAMTS9	3	64640245	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	6456648	64640245	133382185	155	170104											
CNTN3	5067	broad.mit.edu	37	chr3	74413830	74413830	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactatcatttcactcacaCagaaactttctgcatttttc	3	11	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74413830	A	A	74413830	1	1	225	0	1	0	0	0	0	0	0	0	3674	493	17	3		3	CNTN3	3	74413830	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	9773585	74413830	123608600	156	170105											
OR5K3	403277	broad.mit.edu	37	chr3	98109910	98109910	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacccactgcagtaccacaCcatgatgtccaagacactct	5	16	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98109910	A	A	98109910	3	1	225	1	0	0	0	0	1	0	0	0	11262	507	18	3	403	3	OR5K3	3	98109910	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	23696080	98109910	99912520	157	170106											
ABI3BP	25890	broad.mit.edu	37	chr3	100604424	100604424	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actttggattttcccatttaCttttttacctgatgaaacaa	4	8	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100604424	A	A	100604424	3	1	225	1	0	0	0	0	1	0	0	0	91	565	20	3	2674	3	ABI3BP	3	100604424	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2494514	100604424	97418006	158	170107											
IMPG2	50939	broad.mit.edu	37	chr3	100976360	100976360	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atacaaggacttcatgatggAtatcaaactcaccattgata	6	8	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100976360	G	G	100976360	1	3	225	0	1	0	0	0	0	0	0	0	7799	348	12	5		5	IMPG2	3	100976360	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	371936	100976360	97046070	159	170108											
SENP7	57337	broad.mit.edu	37	chr3	101090930	101090930	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttattgtgcgcagtctgctTtgcagaattgtcatctactg	9	8	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101090930	G	G	101090930	3	3	225	1	0	0	0	0	1	0	0	0	14164	1850	64	5	2506	5	SENP7	3	101090930	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	114570	101090930	96931500	160	170109											
BOC	91653	broad.mit.edu	37	chr3	113002297	113002297	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggtcgactgccaccccCaactctggccccaccacagc	8	21	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113002297	A	A	113002297	3	1	225	1	0	0	0	0	1	0	0	0	1487	594	21	2	2525	2	BOC	3	113002297	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	11911367	113002297	85020133	161	170110											
WDR52	55779	broad.mit.edu	37	chr3	113119471	113119471	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctccagaatggaaggagaaGaggcattctgggtcctgggt	16	7	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113119471	T	T	113119471	2	4	225	1	0	0	0	0	0	0	0	1	17431	929	33	3		3	WDR52	3	113119471	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	117174	113119471	84902959	162	170111											
IGSF11	152404	broad.mit.edu	37	chr3	118647349	118647349	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acagccaaggactcttgtgtCactcacctaacactgtgaga	8	12	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118647349	A	A	118647349	1	1	225	0	1	0	0	0	0	0	0	0	7668	841	29	3		3	IGSF11	3	118647349	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5527878	118647349	79375081	163	170112											
MYLK	4638	broad.mit.edu	37	chr3	123458825	123458825	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggttttggaaacaacaggctGaccaagctgcttcgcaaaac	10	10	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123458825	A	A	123458825	4	1	225	1	0	0	0	0	0	1	0	0	10150	1299	45	4	5463	4	MYLK	3	123458825	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	4811476	123458825	74563605	164	170113											
KALRN	8997	broad.mit.edu	37	chr3	123871906	123871906	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacagcaggaaccttcttcTttttttaattttttttaatt	4	7	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123871906	C	C	123871906	1	2	225	0	1	0	0	0	0	0	0	0	8045	1624	56	5		5	KALRN	3	123871906	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	413081	123871906	74150524	165	170114											
UMPS	7372	broad.mit.edu	37	chr3	124462773	124462773	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgcaggagataatcttGgccaacagtacaatagccca	8	10	2	1	rs121917891		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124462773	A	A	124462773	3	1	225	1	0	0	0	0	1	0	0	0	17107	1348	47	4	1307	4	UMPS	3	124462773	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	590867	124462773	73559657	166	170115											
MUC13	56667	broad.mit.edu	37	chr3	124653606	124653606	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaatgatttcccttcctGgctacctttcgttttaactg	7	10	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124653606	T	T	124653606	1	4	225	0	1	0	0	0	0	0	0	0	10065	1363	47	2		2	MUC13	3	124653606	5'Flank	SNP	G	TCGA-91-6828-01A-11D-1855-08	190833	124653606	73368824	167	170116											
SLCO2A1	6578	broad.mit.edu	37	chr3	133669845	133669845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacatgctaacatggtacGggaacacataggagatacca	10	8	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133669845	T	T	133669845	1	4	225	0	1	0	0	0	0	0	0	0	14840	1131	39	1		1	SLCO2A1	3	133669845	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	9016239	133669845	64352585	168	170117											
MSL2	55167	broad.mit.edu	37	chr3	135870109	135870109	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactggtgctggtactagcGttacgcacagcaatgctagt	11	10	0	0	rs138536154	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135870109	T	T	135870109	3	4	225	1	0	0	0	0	1	0	0	0	9972	1136	40	3	123	3	MSL2	3	135870109	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2200264	135870109	62152321	169	170118											
HPS3	84343	broad.mit.edu	37	chr3	148859241	148859241	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctgggagtgaagaccCatgtgggtaataggtttggt	17	5	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148859241	A	A	148859241	1	1	225	0	1	0	0	0	0	0	0	0	7407	609	21	2		2	HPS3	3	148859241	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	12989132	148859241	49163189	170	170119											
MBNL1	4154	broad.mit.edu	37	chr3	152176040	152176040	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccatttgccaatgctgtaAaattgtgtaaaaatgtcagc	8	7	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152176040	C	C	152176040	1	2	225	0	1	0	0	0	0	0	0	0	9446	29	1	5		5	MBNL1	3	152176040	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	3316799	152176040	45846390	171	170120											
LEKR1	389170	broad.mit.edu	37	chr3	156695248	156695248	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttaatgaactcagtgccCaccccttgcaacaagcattg	6	15	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156695248	A	A	156695248	1	1	225	0	1	0	0	0	0	0	0	0	8789	609	21	2		2	LEKR1	3	156695248	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	4519208	156695248	41327182	172	170121											
CRYGS	1427	broad.mit.edu	37	chr3	186257351	186257351	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgcaatcacagtcatagcgAcggccttgaaaatttttgtc	8	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186257351	T	T	186257351	2	4	225	1	0	0	0	0	0	0	0	1	3951	262	10	5		5	CRYGS	3	186257351	Silent	SNP	A	TCGA-91-6828-01A-11D-1855-08	29562103	186257351	11765079	173	170122											
BCL6	604	broad.mit.edu	37	chr3	187447128	187447128	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggagccagaagcctggagGatgcaggcattcttactgct	15	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187447128	T	T	187447128	2	4	225	1	0	0	0	0	0	0	0	1	1381	1164	41	3		3	BCL6	3	187447128	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	1189777	187447128	10575302	174	170123											
ZNF595	152687	broad.mit.edu	37	chr4	60183	60183	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgcattttttctcttattCacaaatagggtcatcttctg	6	9	5	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60183	G	G	60183	1	3	225	0	1	0	0	0	0	0	0	0	18152	841	29	4		4	ZNF595	4	60183	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08		60183	191094093	175	170124											
ZNF732	654254	broad.mit.edu	37	chr4	284169	284169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctcagctatagtccagaaGtggtccttcccatcaagaga	8	11	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	284169	T	T	284169	1	4	225	0	1	0	0	0	0	0	0	0	18252	1044	36	3		3	ZNF732	4	284169	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	223986	284169	190870107	176	170125											
PIGG	54872	broad.mit.edu	37	chr4	517191	517207	+	Intron	DEL	GCAAGATGTGTGTCGTT	-	-													gagcaaggacttgacatgcaGcaagatgtgtgtcgttatca					rs7678962	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	517207	-	-	517191	6	5	225	0	1	1	0	1	0	0	0	0	11983	986	34	0		0	PIGG	4	517191	Intron	DEL	GCAAGATGTGTGTCGTT	TCGA-91-6828-01A-11D-1855-08	233022	517191	190637085	177	170126											
SORCS2	57537	broad.mit.edu	37	chr4	7728606	7728606	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgggaactcggtgctgcagGactccagggtcctccgtgtg	16	11	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7728606	C	C	7728606	3	2	225	1	0	0	0	0	1	0	0	0	15045	1174	41	4	2927	4	SORCS2	4	7728606	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	7211415	7728606	183425670	178	170127											
N4BP2	55728	broad.mit.edu	37	chr4	40104287	40104287	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacttttagaatctgagtgCgttgaggctcaattctctga	10	7	3	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40104287	T	T	40104287	2	4	225	1	0	0	0	0	0	0	0	1	10204	776	27	4		4	N4BP2	4	40104287	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	32375681	40104287	151049989	179	170128											
ATP10D	57205	broad.mit.edu	37	chr4	47593016	47593016	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggggggggttctgtaatgcAtttgagatgaatttaattct	14	3	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47593016	T	T	47593016	1	4	225	0	1	0	0	0	0	0	0	0	1122	232	8	5		5	ATP10D	4	47593016	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	7488729	47593016	143561260	180	170129											
CWH43	80157	broad.mit.edu	37	chr4	49034431	49034431	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgatctgacaaatggaCtgccatataagtctctgccg	9	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49034431	A	A	49034431	1	1	225	0	1	0	0	0	0	0	0	0	4106	580	20	3		3	CWH43	4	49034431	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1441415	49034431	142119845	181	170130											
PDGFRA	5156	broad.mit.edu	37	chr4	54342866	54342866	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agagtgaaagagtggtttaaGaaatgtaatcgttttctccc	10	5	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54342866	C	C	54342866	1	2	225	0	1	0	0	0	0	0	0	0	11755	957	33	4		4	PDGFRA	4	54342866	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	5308435	54342866	136811410	182	170131											
AASDH	132949	broad.mit.edu	37	chr4	57211523	57211523	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaataattctttagcctaCagcatgcaatttatattcag	5	7	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57211523	A	A	57211523	1	1	225	0	1	0	0	0	0	0	0	0	22	493	17	3		3	AASDH	4	57211523	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2868657	57211523	133942753	183	170132											
REST	5978	broad.mit.edu	37	chr4	57777171	57777171	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagcgtcgtagaacctcagCctgtatttgaggcatcaggt	11	10	3	2	rs149829250	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57777171	G	G	57777171	3	3	225	1	0	0	0	0	1	0	0	0	13342	739	26	4	369	4	REST	4	57777171	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	565648	57777171	133377105	184	170133											
LPHN3	23284	broad.mit.edu	37	chr4	62449563	62449563	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctcatggaataaaagtgGtaaggagcataagaaggtat	11	4	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62449563	T	T	62449563	1	4	225	0	1	0	0	0	0	0	0	0	9004	1276	44	3		3	LPHN3	4	62449563	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	4672392	62449563	128704713	185	170134											
LPHN3	23284	broad.mit.edu	37	chr4	62453151	62453152	+	Frame_Shift_Del	DEL	TC	-	-													cagatgcctataagattatgTctcaaaggtatgatacttct							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62453152	-	-	62453151	7	5	225	1	0	1	0	1	0	0	0	0	9004	1667	58	0	268	0	LPHN3	4	62453151	Frame_Shift_Del	DEL	TC	TCGA-91-6828-01A-11D-1855-08	3588	62453151	128701125	186	170135											
LPHN3	23284	broad.mit.edu	37	chr4	62778453	62778453	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcttcagaaaagagagcGctcttgcagagcctatgtcc	10	11	3	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62778453	A	A	62778453	3	1	225	1	0	0	0	0	1	0	0	0	9004	1087	38	4	1924	4	LPHN3	4	62778453	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	325302	62778453	128375823	187	170136											
TECRL	253017	broad.mit.edu	37	chr4	65147240	65147240	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaaacatccatgtgaaGgggttataatttggacttgg	12	4	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65147240	T	T	65147240	2	4	225	1	0	0	0	0	0	0	0	1	15868	987	35	2		2	TECRL	4	65147240	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	2368787	65147240	126007036	188	170137											
MUC7	4589	broad.mit.edu	37	chr4	71347156	71347156	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcttcctcagctccacCagagaccacagctgccccac	5	20	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71347156	A	A	71347156	3	1	225	1	0	0	0	0	1	0	0	0	10075	594	21	2	701	2	MUC7	4	71347156	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	6199916	71347156	119807120	189	170138											
AFM	173	broad.mit.edu	37	chr4	74349711	74349712	+	Intron	INS	-	T	T													taatattgaatacatgtgagINSttgtgctaaatactttttga							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74349712	T	T	74349711	6	5	225	0	1	1	1	0	0	0	0	0	361	1044	36	0		0	AFM	4	74349711	Intron	INS	-	TCGA-91-6828-01A-11D-1855-08	3002555	74349711	116804565	190	170139											
PPEF2	5470	broad.mit.edu	37	chr4	76785703	76785703	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagaaaaaattcattttcCttctttgtcatacgtttaga	5	7	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76785703	T	T	76785703	1	4	225	0	1	0	0	0	0	0	0	0	12404	696	24	4		4	PPEF2	4	76785703	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2435992	76785703	114368573	191	170140											
PPEF2	5470	broad.mit.edu	37	chr4	76809329	76809329	+	Intron	DEL	G	-	-													caggtagagcattcttctttGtgtgcagcatggaaagccgt							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76809329	-	-	76809329	6	5	225	0	1	1	0	1	0	0	0	0	12404	1392	48	0		0	PPEF2	4	76809329	Intron	DEL	G	TCGA-91-6828-01A-11D-1855-08	23626	76809329	114344947	192	170141											
NUDT9	53343	broad.mit.edu	37	chr4	88379263	88379263	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatactataaaaagggcaGggtaggccacttggcctatt	10	7	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88379263	T	T	88379263	1	4	225	0	1	0	0	0	0	0	0	0	10841	1015	35	2		2	NUDT9	4	88379263	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	11569934	88379263	102775013	193	170142											
PDHA2	5161	broad.mit.edu	37	chr4	96762444	96762444	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gttcgtggtgcaaatccatgGatcaagtttaagtccgtcag	11	8	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96762444	T	T	96762444	3	4	225	1	0	0	0	0	1	0	0	0	11759	1183	41	3	1145	3	PDHA2	4	96762444	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	8383181	96762444	94391832	194	170143											
ADH1A	124	broad.mit.edu	37	chr4	100201250	100201250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgtcacttgtaaaaggGgagatatgctgaggttaatg	13	5	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100201250	T	T	100201250	1	4	225	0	1	0	0	0	0	0	0	0	307	1247	43	2		2	ADH1A	4	100201250	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	3438806	100201250	90953026	195	170144											
FAT4	79633	broad.mit.edu	37	chr4	126372404	126372404	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctaaacatctacagtgtGcagatcagtgaaggggtccc	10	10	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126372404	T	T	126372404	2	4	225	1	0	0	0	0	0	0	0	1	5749	1306	46	3		3	FAT4	4	126372404	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	26171154	126372404	64781872	196	170145											
PCDH10	57575	broad.mit.edu	37	chr4	134071514	134071514	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctggagacaggggtgctGtacgtgaacgagaaaataga	14	6	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134071514	T	T	134071514	2	4	225	1	0	0	0	0	0	0	0	1	11601	1364	48	3		3	PCDH10	4	134071514	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	7699110	134071514	57082762	197	170146											
RNF150	57484	broad.mit.edu	37	chr4	141868790	141868790	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaacccaatcaaaagcaGgcagcctagtgactcaccgg	8	14	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141868790	T	T	141868790	1	4	225	0	1	0	0	0	0	0	0	0	13562	1015	35	2		2	RNF150	4	141868790	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	7797276	141868790	49285486	198	170147											
ZNF827	152485	broad.mit.edu	37	chr4	146686009	146686009	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaaggcagcaggggttcctGactaactcctctcataccaa	8	12	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146686009	C	C	146686009	1	2	225	0	1	0	0	0	0	0	0	0	18309	1305	45	4		4	ZNF827	4	146686009	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	4817219	146686009	44468267	199	170148											
SH3D19	152503	broad.mit.edu	37	chr4	152065389	152065389	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taccttacaagagagttctcCggggttttgagagacaatat	10	7	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152065389	A	A	152065389	4	1	225	1	0	0	0	0	0	1	0	0	14362	661	23	1	1118	1	SH3D19	4	152065389	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5379380	152065389	39088887	200	170149											
TIGD4	201798	broad.mit.edu	37	chr4	153691222	153691222	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tcatagctatacatttggaaGataaacatgatggaaagaat	8	4	1	3	rs149761550	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153691222	A	A	153691222	3	1	225	1	0	0	0	0	1	0	0	0	16021	942	33	4	607	4	TIGD4	4	153691222	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1625833	153691222	37463054	201	170150											
ODZ3	55714	broad.mit.edu	37	chr4	183635159	183635159	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttataaaggcctgttcccaCtaagtgtcccttatctgttt	6	10	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183635159	T	T	183635159	1	4	225	0	1	0	0	0	0	0	0	0	10931	580	20	4		4	ODZ3	4	183635159	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	29943937	183635159	7519117	202	170151											
ACSL1	2180	broad.mit.edu	37	chr4	185686014	185686014	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctacagccatacctgcggtCcagtctccaggcatggtcag	10	15	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185686014	A	A	185686014	3	1	225	1	0	0	0	0	1	0	0	0	177	856	30	3	699	3	ACSL1	4	185686014	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2050855	185686014	5468262	203	170152											
ADAMTS16	170690	broad.mit.edu	37	chr5	5200305	5200305	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtccgagggcaacatcatGtcccctacattggcaggacg	11	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5200305	A	A	5200305	3	1	225	1	0	0	0	0	1	0	0	0	261	1377	48	4	1408	4	ADAMTS16	5	5200305	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08		5200305	175714955	204	170153											
ADAMTS16	170690	broad.mit.edu	37	chr5	5209320	5209320	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acacagtgcaagtggcagttCggagagaaagccaagctctg	13	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5209320	A	A	5209320	3	1	225	1	0	0	0	0	1	0	0	0	261	883	31	3	1604	3	ADAMTS16	5	5209320	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	9015	5209320	175705940	205	170154											
ADAMTS16	170690	broad.mit.edu	37	chr5	5242137	5242137	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggttttgcattaatttgtTttattttttcccctttctta	4	7	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5242137	A	A	5242137	1	1	225	0	1	0	0	0	0	0	0	0	261	1856	64	5		5	ADAMTS16	5	5242137	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	32817	5242137	175673123	206	170155											
SRD5A1	6715	broad.mit.edu	37	chr5	6651869	6651890	+	Intron	DEL	TTAAAACCCAAATCATTTAAGA	-	-													tttgtacaagaaagtaagatTtaaaacccaaatcatttaag							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	6651890	-	-	6651869	6	5	225	0	1	1	0	1	0	0	0	0	15256	1856	64	0		0	SRD5A1	5	6651869	Intron	DEL	TTAAAACCCAAATCATTTAAGA	TCGA-91-6828-01A-11D-1855-08	1409732	6651869	174263391	207	170156											
DNAH5	1767	broad.mit.edu	37	chr5	13807619	13807619	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaattcagatgagattcaaTtgaagcagaatagtagagat	9	3	2	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13807619	C	C	13807619	1	2	225	0	1	0	0	0	0	0	0	0	4644	1508	52	5		5	DNAH5	5	13807619	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	7155750	13807619	167107641	208	170157											
CDH12	1010	broad.mit.edu	37	chr5	21975358	21975358	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcacgaagagtgtagaaaGgtttctcttctctatctagg	11	7	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21975358	A	A	21975358	3	1	225	1	0	0	0	0	1	0	0	0	3128	1000	35	4	2056	4	CDH12	5	21975358	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	8167739	21975358	158939902	209	170158											
CDH10	1008	broad.mit.edu	37	chr5	24537674	24537674	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccctatcaattcgccttGtggcatgaatatcacctgtt	6	13	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24537674	T	T	24537674	3	4	225	1	0	0	0	0	1	0	0	0	3126	1377	48	3	2065	3	CDH10	5	24537674	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2562316	24537674	156377586	210	170159											
DNAJC21	134218	broad.mit.edu	37	chr5	34937468	34937468	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttattggcagagtttctGcactcaaaagaattttgcat	8	8	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34937468	T	T	34937468	3	4	225	1	0	0	0	0	1	0	0	0	4680	1319	46	3	494	3	DNAJC21	5	34937468	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	10399794	34937468	145977792	211	170160											
SPEF2	79925	broad.mit.edu	37	chr5	35771597	35771597	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagttcgagtacgtgggcAcaattgtttacagtggatta	11	5	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35771597	C	C	35771597	1	2	225	0	1	0	0	0	0	0	0	0	15153	174	6	5		5	SPEF2	5	35771597	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	834129	35771597	145143663	212	170161											
NUP155	9631	broad.mit.edu	37	chr5	37299057	37299057	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcattctatccgaggagcTcaatgtcacactgtcactca	7	12	5	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37299057	C	C	37299057	3	2	225	1	0	0	0	0	1	0	0	0	10851	1551	54	5	485	5	NUP155	5	37299057	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1527460	37299057	143616203	213	170162											
NUP155	9631	broad.mit.edu	37	chr5	37350358	37350358	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctttggctaaaccaccCtgcttcagccttaaagaaaa	5	12	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37350358	A	A	37350358	3	1	225	1	0	0	0	0	1	0	0	0	10851	681	24	2	3558	2	NUP155	5	37350358	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	51301	37350358	143564902	214	170163											
EGFLAM	133584	broad.mit.edu	37	chr5	38458490	38458490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtggcaccgagttaaggCcgttaggtgagtccctcccg	14	12	0	1	rs139285515	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38458490	A	A	38458490	3	1	225	1	0	0	0	0	1	0	0	0	5006	739	26	3	2857	3	EGFLAM	5	38458490	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1108132	38458490	142456770	215	170164											
LIFR	3977	broad.mit.edu	37	chr5	38496731	38496731	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaattgttataaaaccctGcaaaacgtgactgtgactag	7	8	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38496731	A	A	38496731	1	1	225	0	1	0	0	0	0	0	0	0	8852	1334	46	4		4	LIFR	5	38496731	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	38241	38496731	142418529	216	170165											
OSMR	9180	broad.mit.edu	37	chr5	38883971	38883971	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatattgttcgttttccctaAagataagctggtggaagaag	10	5	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38883971	T	T	38883971	3	4	225	1	0	0	0	0	1	0	0	0	11386	14	1	5	475	5	OSMR	5	38883971	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	387240	38883971	142031289	217	170166											
DAB2	1601	broad.mit.edu	37	chr5	39383196	39383196	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggatcaggattaggggTgggaaagaagttgagattgg	18	1	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39383196	A	A	39383196	3	1	225	1	0	0	0	0	1	0	0	0	4251	1696	59	5	1467	5	DAB2	5	39383196	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	499225	39383196	141532064	218	170167											
ZNF366	167465	broad.mit.edu	37	chr5	71756465	71756465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgcttgaagagcttccCgcagtgcgtgcacgcgtgcg	15	12	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71756465	A	A	71756465	3	1	225	1	0	0	0	0	1	0	0	0	17996	652	23	1	1391	1	ZNF366	5	71756465	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	32373269	71756465	109158795	219	170168											
AP3B1	8546	broad.mit.edu	37	chr5	77590550	77590551	+	5'Flank	DNP	CT	TA	TA													tcacggctccctgagccgacCtggcagtccaccccctgcgc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	77590551	TA	TA	77590550	1	4	225	0	1	0	0	0	0	0	0	0	746	696	24	4		4	AP3B1	5	77590550	5'Flank	DNP	CT	TCGA-91-6828-01A-11D-1855-08	5834085	77590550	103324710	220	170169											
ANKRD34B	340120	broad.mit.edu	37	chr5	79855060	79855060	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcttgcaatgaagccactCtgttctggtgcattaataat	7	10	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79855060	A	A	79855060	3	1	225	1	0	0	0	0	1	0	0	0	663	913	32	3	769	3	ANKRD34B	5	79855060	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2264510	79855060	101060200	221	170170											
FAM172A	83989	broad.mit.edu	37	chr5	93386362	93386362	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagaaagagtgcataaactgCtgcatcttcaaaacttttat	6	7	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93386362	G	G	93386362	1	3	225	0	1	0	0	0	0	0	0	0	5537	812	28	4		4	FAM172A	5	93386362	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	13531302	93386362	87528898	222	170171											
TTC37	9652	broad.mit.edu	37	chr5	94877669	94877669	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatttgctgttctcacatTcatttattttgctaaataat	3	7	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94877669	A	A	94877669	1	1	225	0	1	0	0	0	0	0	0	0	16831	1798	62	5		5	TTC37	5	94877669	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1491307	94877669	86037591	223	170172											
PCSK1	5122	broad.mit.edu	37	chr5	95764992	95764992	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggggtggtttttatgtttGaataagtagtgattttcaag	12	2	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95764992	C	C	95764992	3	2	225	1	0	0	0	0	1	0	0	0	11694	1281	45	4	2103	4	PCSK1	5	95764992	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	887323	95764992	85150268	224	170173											
EPB41L4A	64097	broad.mit.edu	37	chr5	111576395	111576395	+	Intron	DEL	A	-	-													catttattaagacaacaaacAaaatttttacatcaatttac							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111576395	-	-	111576395	6	5	225	0	1	1	0	1	0	0	0	0	5197	145	5	0		0	EPB41L4A	5	111576395	Intron	DEL	A	TCGA-91-6828-01A-11D-1855-08	15811403	111576395	69338865	225	170174											
AQPEP	206338	broad.mit.edu	37	chr5	115336760	115336760	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtggtgattttttaaaAcaggccatagatgaccagag	10	6	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115336760	G	G	115336760	1	3	225	0	1	0	0	0	0	0	0	0	836	58	2	5		5	AQPEP	5	115336760	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	3760365	115336760	65578500	226	170175											
DMXL1	1657	broad.mit.edu	37	chr5	118501007	118501007	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaagggtgctTcaatgtgaaaacctgttcat	7	5	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118501007	G	G	118501007	1	3	225	0	1	0	0	0	0	0	0	0	4634	1798	62	5		5	DMXL1	5	118501007	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	3164247	118501007	62414253	227	170176											
CSNK1G3	1456	broad.mit.edu	37	chr5	122909090	122909090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcttttcccccagatgGtatacctcaagtttactatt	4	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122909090	T	T	122909090	3	4	225	1	0	0	0	0	1	0	0	0	3990	1261	44	3	307	3	CSNK1G3	5	122909090	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	4408083	122909090	58006170	228	170177											
FBN2	2201	broad.mit.edu	37	chr5	127713551	127713551	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttacaaagaaccccattCtggatgcactcatcaatatc	4	11	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127713551	G	G	127713551	3	3	225	1	0	0	0	0	1	0	0	0	5760	912	32	4	7207	4	FBN2	5	127713551	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	4804461	127713551	53201709	229	170178											
FBN2	2201	broad.mit.edu	37	chr5	127713567	127713567	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cattctggatgcactcatcaAtatctaggaagattgagaat	8	7	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127713567	T	T	127713567	3	4	225	1	0	0	0	0	1	0	0	0	5760	101	4	5	7223	5	FBN2	5	127713567	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	16	127713567	53201693	230	170179											
ACSL6	23305	broad.mit.edu	37	chr5	131324551	131324551	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagggtgtcatagagcgggAccaccaccatggaatatgtg	13	10	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131324551	G	G	131324551	3	3	225	1	0	0	0	0	1	0	0	0	181	275	10	5	1715	5	ACSL6	5	131324551	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	3610984	131324551	49590709	231	170180											
LOC153328	153328	broad.mit.edu	37	chr5	135188390	135188390	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagaggccagtcctcccCgcacgctgtcagacctgctc	10	18	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135188390	A	A	135188390	3	1	225	1	0	0	0	0	1	0	0	0	8949	652	23	1	315	1	LOC153328	5	135188390	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3863839	135188390	45726870	232	170181											
TGFBI	7045	broad.mit.edu	37	chr5	135379758	135379758	+	Frame_Shift_Del	DEL	A	-	-													ttgttacagagtcatcagctAcgagtgctgtcctggatatg							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	135379758	-	-	135379758	7	5	225	1	0	1	0	1	0	0	0	0	15943	391	14	0	255	0	TGFBI	5	135379758	Frame_Shift_Del	DEL	A	TCGA-91-6828-01A-11D-1855-08	191368	135379758	45535502	233	170182											
PCDHB4	56131	broad.mit.edu	37	chr5	140502877	140502877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacacccaggctgaaaaccCagcagaacataaccgtgcag	10	13	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140502877	A	A	140502877	3	1	225	1	0	0	0	0	1	0	0	0	11638	595	21	2	1299	2	PCDHB4	5	140502877	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5123119	140502877	40412383	234	170183											
PCDHB7	56129	broad.mit.edu	37	chr5	140554464	140554464	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccccggaccaggccaactCgctcaccgtctacctggtgg	12	17	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140554464	A	A	140554464	4	1	225	1	0	0	0	0	0	1	0	0	11641	893	31	3	2050	3	PCDHB7	5	140554464	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	51587	140554464	40360796	235	170184											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720800	140720801	+	Frame_Shift_Ins	INS	-	A	A													ctttcctgcagacctattccINScacgaggtctccctcactgc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140720801	A	A	140720800	7	5	225	1	0	1	1	0	0	0	0	0	11648	610	22	0	2264	0	PCDHGA2	5	140720800	Frame_Shift_Ins	INS	-	TCGA-91-6828-01A-11D-1855-08	166336	140720800	40194460	236	170185											
PCDHGB1	56104	broad.mit.edu	37	chr5	140732045	140732045	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccggggttcctcccaaccacAgcgaggggactttgccctat	11	15	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140732045	T	T	140732045	3	4	225	1	0	0	0	0	1	0	0	0	11656	188	7	5	2220	5	PCDHGB1	5	140732045	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	11245	140732045	40183215	237	170186											
PCDHGA4	56111	broad.mit.edu	37	chr5	140735712	140735712	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgaggactctggattctaTgacatagatgtagaagccca	10	7	2	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140735712	A	A	140735712	4	1	225	1	0	0	0	0	0	1	0	0	11650	1471	51	5	947	5	PCDHGA4	5	140735712	Nonsense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	3667	140735712	40179548	238	170187											
PCDHGB5	56101	broad.mit.edu	37	chr5	140779378	140779378	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgcgggtgctgtaccccGcgctgggtcccgacggctct	14	17	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140779378	A	A	140779378	3	1	225	1	0	0	0	0	1	0	0	0	11660	1087	38	4	1686	4	PCDHGB5	5	140779378	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	43666	140779378	40135882	239	170188											
PCDHGA11	56105	broad.mit.edu	37	chr5	140802147	140802147	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgacaacgataaccctccCgtttttcctcactcctctta	4	15	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140802147	A	A	140802147	2	1	225	1	0	0	0	0	0	0	0	1	11646	639	23	1		1	PCDHGA11	5	140802147	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	22769	140802147	40113113	240	170189											
GNPDA1	10007	broad.mit.edu	37	chr5	141387389	141387389	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactcatccatgttgaaggtCttcacatatttaaaggacag	7	8	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141387389	A	A	141387389	3	1	225	1	0	0	0	0	1	0	0	0	6606	912	32	3	688	3	GNPDA1	5	141387389	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	585242	141387389	39527871	241	170190											
PDE6A	5145	broad.mit.edu	37	chr5	149240474	149240474	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgttactggatgcagcagGacttggatgtagttgcaccc	14	8	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149240474	T	T	149240474	3	4	225	1	0	0	0	0	1	0	0	0	11739	1174	41	3	19	3	PDE6A	5	149240474	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	7853085	149240474	31674786	242	170191											
PDGFRB	5159	broad.mit.edu	37	chr5	149504257	149504257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcagggagaggtgaagGcccagatgtggagggctcca	20	7	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149504257	T	T	149504257	1	4	225	0	1	0	0	0	0	0	0	0	11756	1218	42	3		3	PDGFRB	5	149504257	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	263783	149504257	31411003	243	170192											
GLRA1	2741	broad.mit.edu	37	chr5	151229542	151229542	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggtgttctgtgaagttttCgagtacaaccgaaagcctgc	11	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151229542	T	T	151229542	1	4	225	0	1	0	0	0	0	0	0	0	6518	899	31	4		4	GLRA1	5	151229542	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1725285	151229542	29685718	244	170193											
TIMD4	91937	broad.mit.edu	37	chr5	156378518	156378518	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaacccaagatacatctgCgtacctgcagtgaggatggg	12	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156378518	T	T	156378518	1	4	225	0	1	0	0	0	0	0	0	0	16026	783	27	4		4	TIMD4	5	156378518	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5148976	156378518	24536742	245	170194											
GABRA1	2554	broad.mit.edu	37	chr5	161317997	161317997	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatgcataatgacagtgaTtctctcacaagtctccttct	6	12	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161317997	A	A	161317997	3	1	225	1	0	0	0	0	1	0	0	0	6220	1493	52	5	823	5	GABRA1	5	161317997	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	4939479	161317997	19597263	246	170195											
HMMR	3161	broad.mit.edu	37	chr5	162896811	162896811	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	caacttattgaattgaccagGactaatgaactactaaaatc	5	8	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162896811	T	T	162896811	3	4	225	1	0	0	0	0	1	0	0	0	7309	1165	41	3	456	3	HMMR	5	162896811	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1578814	162896811	18018449	247	170196											
ODZ2	57451	broad.mit.edu	37	chr5	167674283	167674283	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataagtgagactcccctcccCgttgacctctaccgctatga	7	15	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167674283	A	A	167674283	2	1	225	1	0	0	0	0	0	0	0	1	10930	639	23	1		1	ODZ2	5	167674283	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	4777472	167674283	13240977	248	170197											
SLIT3	6586	broad.mit.edu	37	chr5	168222382	168222382	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcttaggacagcgttcCaggtctgaaacagaactgcc	10	12	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168222382	A	A	168222382	1	1	225	0	1	0	0	0	0	0	0	0	14855	609	21	2		2	SLIT3	5	168222382	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	548099	168222382	12692878	249	170198											
KIAA1191	57179	broad.mit.edu	37	chr5	175774658	175774658	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtttgaggttatgggccCgtggtggctgtttctttcct	16	7	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175774658	A	A	175774658	3	1	225	1	0	0	0	0	1	0	0	0	8282	652	23	1	58	1	KIAA1191	5	175774658	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	7552276	175774658	5140602	250	170199											
UIMC1	51720	broad.mit.edu	37	chr5	176332314	176332314	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttcttcctctgccagctTtggtccgtgtccgactacct	7	16	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176332314	A	A	176332314	3	1	225	1	0	0	0	0	1	0	0	0	17097	1841	64	5	34	5	UIMC1	5	176332314	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	557656	176332314	4582946	251	170200											
PRPF4B	8899	broad.mit.edu	37	chr6	4032758	4032758	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaaagatgcttcatctgGgaaagaaaataggtcaccca	8	9	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4032758	T	T	4032758	3	4	225	1	0	0	0	0	1	0	0	0	12679	1232	43	2	1013	2	PRPF4B	6	4032758	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08		4032758	167082309	252	170201											
F13A1	2162	broad.mit.edu	37	chr6	6196057	6196057	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacaaaaggtgcatcaaaTtggaagcagacatggccgtg	11	7	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6196057	C	C	6196057	2	2	225	1	0	0	0	0	0	0	0	1	5383	1490	52	5		5	F13A1	6	6196057	Silent	SNP	T	TCGA-91-6828-01A-11D-1855-08	2163299	6196057	164919010	253	170202											
CDKAL1	54901	broad.mit.edu	37	chr6	21065370	21065370	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacagtgaaacttgttgaaGagtacaaattcccaagcctg	8	8	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21065370	C	C	21065370	3	2	225	1	0	0	0	0	1	0	0	0	3182	943	33	4	1185	4	CDKAL1	6	21065370	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	14869313	21065370	150049697	254	170203											
ZKSCAN4	387032	broad.mit.edu	37	chr6	28213080	28213080	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattacatttataagacacGggagcctcagtattttccca	6	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28213080	T	T	28213080	2	4	225	1	0	0	0	0	0	0	0	1	17815	1103	39	1		1	ZKSCAN4	6	28213080	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	7147710	28213080	142901987	255	170204											
TRIM10	10107	broad.mit.edu	37	chr6	30121946	30121946	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgtgtggggaaggagcCcagagccgagacgaagcccc	16	13	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30121946	A	A	30121946	3	1	225	1	0	0	0	0	1	0	0	0	16610	623	22	2	291	2	TRIM10	6	30121946	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1908866	30121946	140993121	256	170205											
DDR1	780	broad.mit.edu	37	chr6	30859822	30859822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggcagatggtgtggtgGggctggatgactttaggaag	19	4	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30859822	T	T	30859822	3	4	225	1	0	0	0	0	1	0	0	0	4369	1232	43	2	731	2	DDR1	6	30859822	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	737876	30859822	140255245	257	170206											
DDR1	780	broad.mit.edu	37	chr6	30866587	30866587	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcccagagtggatctgGggcttccaataggaagggag	17	7	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30866587	T	T	30866587	1	4	225	0	1	0	0	0	0	0	0	0	4369	1247	43	2		2	DDR1	6	30866587	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	6765	30866587	140248480	258	170207											
BAT3	7917	broad.mit.edu	37	chr6	31616640	31616640	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccaccccacctcccagcCtccttctcccagatcccctt	4	23	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31616640	T	T	31616640	1	4	225	0	1	0	0	0	0	0	0	0	1327	696	24	4		4	BAT3	6	31616640	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	750053	31616640	139498427	259	170208											
RDBP	7936	broad.mit.edu	37	chr6	31926270	31926270	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagacatctttctccactGttaccacccggggttcacac	6	16	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31926270	A	A	31926270	1	1	225	0	1	0	0	0	0	0	0	0	13296	1392	48	4		4	RDBP	6	31926270	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	309630	31926270	139188797	260	170209											
TAPBP	6892	broad.mit.edu	37	chr6	33273031	33273031	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgccactctagcccaaaGggagggggacccggagccag	15	14	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33273031	T	T	33273031	2	4	225	1	0	0	0	0	0	0	0	1	15671	987	35	2		2	TAPBP	6	33273031	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	1346761	33273031	137842036	261	170210											
KCNK5	8645	broad.mit.edu	37	chr6	39196902	39196902	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatggctcccgagcggcCgcctcctagagaaagcctct	10	17	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39196902	A	A	39196902	1	1	225	0	1	0	0	0	0	0	0	0	8139	667	23	1		1	KCNK5	6	39196902	5'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	5923871	39196902	131918165	262	170211											
PGK2	5232	broad.mit.edu	37	chr6	49753968	49753968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggaccacagtccaaacccatCcagccaggagatatgccaga	9	14	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49753968	A	A	49753968	3	1	225	1	0	0	0	0	1	0	0	0	11886	856	30	3	324	3	PGK2	6	49753968	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	10557066	49753968	121361099	263	170212											
BEND6	221336	broad.mit.edu	37	chr6	56857338	56857338	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acagccgacttcgacagtctTtggtcatgcttcaaggtaaa	9	10	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56857338	A	A	56857338	3	1	225	1	0	0	0	0	1	0	0	0	1407	1838	64	5	289	5	BEND6	6	56857338	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	7103370	56857338	114257729	264	170213											
BAI3	577	broad.mit.edu	37	chr6	69728293	69728293	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttttctagatttatccagGgtcaatagagttaatgcagg	9	5	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69728293	A	A	69728293	3	1	225	1	0	0	0	0	1	0	0	0	1305	1232	43	4	2051	4	BAI3	6	69728293	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	12870955	69728293	101386774	265	170214											
LMBRD1	55788	broad.mit.edu	37	chr6	70490434	70490434	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatctgtctgctgacattagCattagcccagtcctaggata	8	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70490434	G	G	70490434	3	3	225	1	0	0	0	0	1	0	0	0	8916	710	25	4	1419	4	LMBRD1	6	70490434	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	762141	70490434	100624633	266	170215											
MYO6	4646	broad.mit.edu	37	chr6	76572390	76572390	+	Frame_Shift_Del	DEL	C	-	-													ttccccagccaagtgatcaaCactttacatctgcagttcac							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	76572390	-	-	76572390	7	5	225	1	0	1	0	1	0	0	0	0	10175	478	17	0	1682	0	MYO6	6	76572390	Frame_Shift_Del	DEL	C	TCGA-91-6828-01A-11D-1855-08	6081956	76572390	94542677	267	170216											
IMPG1	3617	broad.mit.edu	37	chr6	76713530	76713530	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttcttaagctgatttgttCtttggtggaaggttttgaga	11	3	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76713530	T	T	76713530	1	4	225	0	1	0	0	0	0	0	0	0	7798	928	32	4		4	IMPG1	6	76713530	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	141140	76713530	94401537	268	170217											
EPHA7	2045	broad.mit.edu	37	chr6	93974451	93974451	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaataggctcagaaataCttgacaccatgcaagaactt	8	8	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93974451	A	A	93974451	1	1	225	0	1	0	0	0	0	0	0	0	5214	580	20	3		3	EPHA7	6	93974451	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	17260921	93974451	77140616	269	170218											
SLC22A16	85413	broad.mit.edu	37	chr6	110760110	110760110	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgactgcaaaaggggaccccCgtcttctaacccactaccca	7	17	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110760110	A	A	110760110	1	1	225	0	1	0	0	0	0	0	0	0	14560	667	23	1		1	SLC22A16	6	110760110	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	16785659	110760110	60354957	270	170219											
LAMA4	3910	broad.mit.edu	37	chr6	112475991	112475991	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttggaaatctctgtctacGtgtatgaaaggagggaagca	12	5	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112475991	T	T	112475991	1	4	225	0	1	0	0	0	0	0	0	0	8680	1160	40	3		3	LAMA4	6	112475991	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1715881	112475991	58639076	271	170220											
PTPRK	5796	broad.mit.edu	37	chr6	128294253	128294253	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	attttgccgtttcaccatttCaacaacgatgcctatagcac	5	12	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128294253	T	T	128294253	3	4	225	1	0	0	0	0	1	0	0	0	12913	835	29	4	147	4	PTPRK	6	128294253	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	15818262	128294253	42820814	272	170221											
ALDH8A1	64577	broad.mit.edu	37	chr6	135263563	135263563	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgactcccaccggggcCcgcaccgtgtagtgcatgca	11	17	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135263563	A	A	135263563	2	1	225	1	0	0	0	0	0	0	0	1	505	610	22	2		2	ALDH8A1	6	135263563	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	6969310	135263563	35851504	273	170222											
BCLAF1	9774	broad.mit.edu	37	chr6	136594378	136594378	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaactttactttaagagagAtttgtttgtgacagaagggc	10	4	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136594378	T	T	136594378	1	4	225	0	1	0	0	0	0	0	0	0	1388	348	12	5		5	BCLAF1	6	136594378	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	1330815	136594378	34520689	274	170223											
MAP3K5	4217	broad.mit.edu	37	chr6	136913250	136913250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgtgacagctgcaggcGgttaggacacagataaaata	11	8	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136913250	T	T	136913250	1	4	225	0	1	0	0	0	0	0	0	0	9345	1131	39	1		1	MAP3K5	6	136913250	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	318872	136913250	34201817	275	170224											
PLAGL1	5325	broad.mit.edu	37	chr6	144263857	144263857	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttaagagctgaagaaagGtgtagcaacaatattatatc	9	4	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144263857	A	A	144263857	1	1	225	0	1	0	0	0	0	0	0	0	12114	1276	44	4		4	PLAGL1	6	144263857	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	7350607	144263857	26851210	276	170225											
GRM1	2911	broad.mit.edu	37	chr6	146720434	146720434	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aataccagcaacctgggtgtGgtggcccctttgggctacaa	12	11	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146720434	C	C	146720434	2	2	225	1	0	0	0	0	0	0	0	1	6862	1335	47	4		4	GRM1	6	146720434	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	2456577	146720434	24394633	277	170226											
MTHFD1L	25902	broad.mit.edu	37	chr6	151281382	151281382	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcccactggcactgtcgctGaccactacctgtgtttgggc	10	14	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151281382	T	T	151281382	1	4	225	0	1	0	0	0	0	0	0	0	10022	1305	45	3		3	MTHFD1L	6	151281382	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	4560948	151281382	19833685	278	170227											
SYNE1	23345	broad.mit.edu	37	chr6	152532772	152532772	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttagagttcctaattttagTgatcggttctctgataactt	7	6	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152532772	A	A	152532772	1	1	225	0	1	0	0	0	0	0	0	0	15564	1711	59	5		5	SYNE1	6	152532772	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1251390	152532772	18582295	279	170228											
CLDN20	49861	broad.mit.edu	37	chr6	155597138	155597138	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttctgtctgctttggggatCtgcacttccacagtaggaat	11	9	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	155597138	G	G	155597138	3	3	225	1	0	0	0	0	1	0	0	0	3513	903	32	4	287	4	CLDN20	6	155597138	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3064366	155597138	15517929	280	170229											
FNDC1	84624	broad.mit.edu	37	chr6	159668055	159668055	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctttcctaatcaaaggAtctgattgtaactattgagt	6	7	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159668055	G	G	159668055	1	3	225	0	1	0	0	0	0	0	0	0	6026	348	12	5		5	FNDC1	6	159668055	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	4070917	159668055	11447012	281	170230											
PLG	5340	broad.mit.edu	37	chr6	161132763	161132763	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaatcaatgaaactaTgagttttaggccaaatctga	6	5	2	3	rs113832225		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161132763	C	C	161132763	1	2	225	0	1	0	0	0	0	0	0	0	12181	1479	51	5		5	PLG	6	161132763	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1464708	161132763	9982304	282	170231											
PLG	5340	broad.mit.edu	37	chr6	161152151	161152151	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgttttaccacagaccCcagcgtcaggtgggagtact	12	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161152151	A	A	161152151	3	1	225	1	0	0	0	0	1	0	0	0	12181	623	22	2	1371	2	PLG	6	161152151	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	19388	161152151	9962916	283	170232											
PACRG	135138	broad.mit.edu	37	chr6	163378431	163378431	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaatctcataagaactttAggtctcacagcacggacccc	7	13	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	163378431	G	G	163378431	1	3	225	0	1	0	0	0	0	0	0	0	11464	435	15	5		5	PACRG	6	163378431	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	2226280	163378431	7736636	284	170233											
T	6862	broad.mit.edu	37	chr6	166571970	166571970	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggggtgtgtagtgcgCgggggagccccggaagaact	21	7	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166571970	T	T	166571970	3	4	225	1	0	0	0	0	1	0	0	0	15607	768	27	4	170	4	T	6	166571970	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3193539	166571970	4543097	285	170234											
RPS6KA2	6196	broad.mit.edu	37	chr6	166872949	166872949	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacacacctgtgggcgtccGcgctgtgaactcggggtcaa	14	13	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166872949	A	A	166872949	3	1	225	1	0	0	0	0	1	0	0	0	13762	1086	38	4	1178	4	RPS6KA2	6	166872949	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	300979	166872949	4242118	286	170235											
COX19	90639	broad.mit.edu	37	chr7	1012907	1012907	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagacacttcatgaatttcTctttaaagcttttacattca	4	8	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1012907	C	C	1012907	3	2	225	1	0	0	0	0	1	0	0	0	3800	1551	54	5	176	5	COX19	7	1012907	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08		1012907	158125756	287	170236											
FOXK1	221937	broad.mit.edu	37	chr7	4794844	4794844	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggaccttgctggagctcatCccgtgagccgtgtttctccg	13	13	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4794844	G	G	4794844	1	3	225	0	1	0	0	0	0	0	0	0	6074	870	30	4		4	FOXK1	7	4794844	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	3781937	4794844	154343819	288	170237											
COL28A1	340267	broad.mit.edu	37	chr7	7480482	7480482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttgctccctttcttgCcttcgtcaccctaacaaaat	3	15	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7480482	A	A	7480482	3	1	225	1	0	0	0	0	1	0	0	0	3718	739	26	3	1776	3	COL28A1	7	7480482	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2685638	7480482	151658181	289	170238											
GLCCI1	113263	broad.mit.edu	37	chr7	8110750	8110750	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagaagatttgctctatgAtcgtgataaaggtaagaatg	10	4	1	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8110750	T	T	8110750	3	4	225	1	0	0	0	0	1	0	0	0	6495	333	12	5	1188	5	GLCCI1	7	8110750	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	630268	8110750	151027913	290	170239											
HDAC9	9734	broad.mit.edu	37	chr7	18988712	18988712	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcgttttgggagggttttTtttctgttttttgaaggatt	12	2	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18988712	G	G	18988712	1	3	225	0	1	0	0	0	0	0	0	0	7081	1856	64	5		5	HDAC9	7	18988712	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	10877962	18988712	140149951	291	170240											
TWIST1	7291	broad.mit.edu	37	chr7	19156565	19156565	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttccgcagcgcggcgaacGcctcgttcagcgactgggtg	14	14	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19156565	A	A	19156565	3	1	225	1	0	0	0	0	1	0	0	0	16909	1087	38	4	232	4	TWIST1	7	19156565	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	167853	19156565	139982098	292	170241											
CDCA7L	55536	broad.mit.edu	37	chr7	21948230	21948230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgagaaaaaacatgaaaaAtgaaaagcttccccttcata	5	7	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21948230	G	G	21948230	1	3	225	0	1	0	0	0	0	0	0	0	3121	116	4	5		5	CDCA7L	7	21948230	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	2791665	21948230	137190433	293	170242											
PDE1C	5137	broad.mit.edu	37	chr7	31917643	31917643	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	accatgtttgatgtccgtctAtacattctgaaaagccaaaa	6	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31917643	G	G	31917643	2	3	225	1	0	0	0	0	0	0	0	1	11729	456	16	5		5	PDE1C	7	31917643	Silent	SNP	A	TCGA-91-6828-01A-11D-1855-08	9969413	31917643	127221020	294	170243											
TXNDC3	51314	broad.mit.edu	37	chr7	37896961	37896961	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgttgtaagtatatttaCtttctcaattgcattatcag	6	5	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37896961	A	A	37896961	1	1	225	0	1	0	0	0	0	0	0	0	16924	580	20	3		3	TXNDC3	7	37896961	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5979318	37896961	121241702	295	170244											
VPS41	27072	broad.mit.edu	37	chr7	38783118	38783118	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccataatcatcttcaggGcacttcggctattacccatt	5	14	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38783118	A	A	38783118	3	1	225	1	0	0	0	0	1	0	0	0	17337	1203	42	4	582	4	VPS41	7	38783118	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	886157	38783118	120355545	296	170245											
HECW1	23072	broad.mit.edu	37	chr7	43508707	43508707	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acggaccagcagggaaaggtGagtgtgacccacgtgcgggg	18	9	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43508707	C	C	43508707	1	2	225	0	1	0	0	0	0	0	0	0	7109	1305	45	4		4	HECW1	7	43508707	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	4725589	43508707	115629956	297	170246											
DDX56	54606	broad.mit.edu	37	chr7	44608667	44608667	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctggatgctcagcaagaCggtgcaatccctgggccaca	11	14	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44608667	T	T	44608667	1	4	225	0	1	0	0	0	0	0	0	0	4407	551	19	4		4	DDX56	7	44608667	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1099960	44608667	114529996	298	170247											
ZMIZ2	83637	broad.mit.edu	37	chr7	44804838	44804838	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aagcaagcatttgagtggggGaacctgcctggaaacagccc	13	10	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44804838	C	C	44804838	1	2	225	0	1	0	0	0	0	0	0	0	17823	1189	41	4		4	ZMIZ2	7	44804838	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	196171	44804838	114333825	299	170248											
ABCA13	154664	broad.mit.edu	37	chr7	48314884	48314884	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtgaagattcaccatgttCaaatgaaagctcccgaatgg	10	8	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48314884	G	G	48314884	4	3	225	1	0	0	0	0	0	1	0	0	31	838	29	4	5516	4	ABCA13	7	48314884	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3510046	48314884	110823779	300	170249											
ABCA13	154664	broad.mit.edu	37	chr7	48337900	48337900	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtaatatcaaattttgtTttcgcagtcagtaatgatct	7	5	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48337900	A	A	48337900	1	1	225	0	1	0	0	0	0	0	0	0	31	1856	64	5		5	ABCA13	7	48337900	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	23016	48337900	110800763	301	170250											
VSTM2A	222008	broad.mit.edu	37	chr7	54614725	54614725	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccaagggccgcgggcccaGgctcgggacgcacagccctt	15	17	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54614725	A	A	54614725	1	1	225	0	1	0	0	0	0	0	0	0	17356	1015	35	4		4	VSTM2A	7	54614725	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	6276825	54614725	104523938	302	170251											
GBAS	2631	broad.mit.edu	37	chr7	56049250	56049250	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacgtggtatggcgagcaGgaccaagctggtaggaagcg	16	8	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56049250	T	T	56049250	3	4	225	1	0	0	0	0	1	0	0	0	6331	991	35	2	377	2	GBAS	7	56049250	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1434525	56049250	103089413	303	170252											
PHKG1	5260	broad.mit.edu	37	chr7	56156501	56156501	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctggctgtagcccacaGggtctgctggagcctaggac	15	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56156501	T	T	56156501	1	4	225	0	1	0	0	0	0	0	0	0	11941	1015	35	2		2	PHKG1	7	56156501	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	107251	56156501	102982162	304	170253											
WBSCR17	64409	broad.mit.edu	37	chr7	70853165	70853165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacactatgtccagctgcaGtgcctgagcttttatccttc	7	12	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70853165	T	T	70853165	1	4	225	0	1	0	0	0	0	0	0	0	17391	1044	36	3		3	WBSCR17	7	70853165	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	14696664	70853165	88285498	305	170254											
POM121	9883	broad.mit.edu	37	chr7	72399021	72399021	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagtaagtgggagtccatcCggatgaaataccaactgttt	10	7	0	1	rs151002333	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72399021	A	A	72399021	1	1	225	0	1	0	0	0	0	0	0	0	12334	667	23	1		1	POM121	7	72399021	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1545856	72399021	86739642	306	170255											
CLDN4	1364	broad.mit.edu	37	chr7	73245707	73245707	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactgcgtggtgcagagcaCcggccagatgcagtgcaagg	16	10	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73245707	T	T	73245707	3	4	225	1	0	0	0	0	1	0	0	0	3519	507	18	4	178	4	CLDN4	7	73245707	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	846686	73245707	85892956	307	170256											
ELN	2006	broad.mit.edu	37	chr7	73477880	73477880	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccccagaggacacctccGccctccacaggccgaggctt	10	18	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73477880	A	A	73477880	1	1	225	0	1	0	0	0	0	0	0	0	5113	1102	38	4		4	ELN	7	73477880	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	232173	73477880	85660783	308	170257											
MAGI2	9863	broad.mit.edu	37	chr7	78116160	78116160	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccctgagctcgacagaaaGacagcaaagatgtacagagg	12	9	0	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78116160	C	C	78116160	1	2	225	0	1	0	0	0	0	0	0	0	9283	957	33	4		4	MAGI2	7	78116160	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	4638280	78116160	81022503	309	170258											
SAMD9	54809	broad.mit.edu	37	chr7	92730825	92730825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagctcgaccttgtaaaCgaagcaaaagttcttggact	8	9	2	0	rs149966534		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92730825	A	A	92730825	3	1	225	1	0	0	0	0	1	0	0	0	13937	536	19	3	187	3	SAMD9	7	92730825	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	14614665	92730825	66407838	310	170259											
HEPACAM2	253012	broad.mit.edu	37	chr7	92825065	92825065	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaccacactgcccagtgCttaaacaaatgctttttaca	5	11	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92825065	A	A	92825065	1	1	225	0	1	0	0	0	0	0	0	0	7120	812	28	3		3	HEPACAM2	7	92825065	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	94240	92825065	66313598	311	170260											
DLX5	1749	broad.mit.edu	37	chr7	96650227	96650227	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtggtggctgagcgagcGggacgagccctggggctccc	20	11	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96650227	T	T	96650227	3	4	225	1	0	0	0	0	1	0	0	0	4614	1116	39	1	182	1	DLX5	7	96650227	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3825162	96650227	62488436	312	170261											
TRRAP	8295	broad.mit.edu	37	chr7	98592340	98592340	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagttggtgagcacgtttgGggtgggcctggagaatgtgt	19	4	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98592340	T	T	98592340	3	4	225	1	0	0	0	0	1	0	0	0	16726	1232	43	2	10303	2	TRRAP	7	98592340	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1942113	98592340	60546323	313	170262											
CYP3A7	1551	broad.mit.edu	37	chr7	99311200	99311200	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattgacagaaagtgactcGtgaagtcagaagttaatcag	10	5	2	5	rs45585039		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99311200	A	A	99311200	1	1	225	0	1	0	0	0	0	0	0	0	4214	1160	40	4		4	CYP3A7	7	99311200	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	718860	99311200	59827463	314	170263											
STAG3	10734	broad.mit.edu	37	chr7	99809101	99809101	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agaggtcaaggttcttgggtCcacaatatttccagactcca	9	10	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99809101	A	A	99809101	3	1	225	1	0	0	0	0	1	0	0	0	15362	855	30	3	3572	3	STAG3	7	99809101	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	497901	99809101	59329562	315	170264											
ZCWPW1	55063	broad.mit.edu	37	chr7	100000244	100000244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgataaatcaaggccCctaactgtttttaatagaga	6	6	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100000244	A	A	100000244	1	1	225	0	1	0	0	0	0	0	0	0	17723	638	22	2		2	ZCWPW1	7	100000244	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	191143	100000244	59138419	316	170265											
MUC17	140453	broad.mit.edu	37	chr7	100683794	100683794	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctcctacaactgctgaaGgtaccggcataccaatctca	6	15	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100683794	T	T	100683794	3	4	225	1	0	0	0	0	1	0	0	0	10068	1000	35	2	9107	2	MUC17	7	100683794	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	683550	100683794	58454869	317	170266											
FBXL13	222235	broad.mit.edu	37	chr7	102572338	102572338	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatactcactgtgaatgttGggcagtcagagacattcaac	9	8	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102572338	T	T	102572338	3	4	225	1	0	0	0	0	1	0	0	0	5766	1348	47	2	1488	2	FBXL13	7	102572338	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1888544	102572338	56566325	318	170267											
SLC26A5	375611	broad.mit.edu	37	chr7	103018234	103018234	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cttggtagcatcctctccatCtacttctgcatcctgtgtca	6	14	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103018234	T	T	103018234	3	4	225	1	0	0	0	0	1	0	0	0	14634	913	32	4	489	4	SLC26A5	7	103018234	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	445896	103018234	56120429	319	170268											
RELN	5649	broad.mit.edu	37	chr7	103206713	103206713	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagtatccatagagagacAgtcaatatcaacttgacctc	7	10	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103206713	T	T	103206713	3	4	225	1	0	0	0	0	1	0	0	0	13328	188	7	5	5620	5	RELN	7	103206713	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	188479	103206713	55931950	320	170269											
PUS7	54517	broad.mit.edu	37	chr7	105108805	105108805	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctttgagaacgaggtcccCtggaacaggttttagtccat	10	10	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105108805	T	T	105108805	3	4	225	1	0	0	0	0	1	0	0	0	12941	681	24	4	501	4	PUS7	7	105108805	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1902092	105108805	54029858	321	170270											
DNAJB9	4189	broad.mit.edu	37	chr7	108213680	108213680	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttagtggttttgactctacCaatcagcatacagtacagac	7	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	108213680	G	G	108213680	2	3	225	1	0	0	0	0	0	0	0	1	4667	581	21	4		4	DNAJB9	7	108213680	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	3104875	108213680	50924983	322	170271											
CADPS2	93664	broad.mit.edu	37	chr7	122054168	122054168	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttggaagcattgcagagtaGaacaattgccatagtgttac	10	6	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122054168	C	C	122054168	1	2	225	0	1	0	0	0	0	0	0	0	2597	957	33	4		4	CADPS2	7	122054168	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	13840488	122054168	37084495	323	170272											
ASB15	142685	broad.mit.edu	37	chr7	123276740	123276740	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttcacttaaaatcaccagTtgctaaagtgtgcatacatg	6	8	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123276740	C	C	123276740	1	2	225	0	1	0	0	0	0	0	0	0	1023	1740	60	5		5	ASB15	7	123276740	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1222572	123276740	35861923	324	170273											
ARF5	381	broad.mit.edu	37	chr7	127231284	127231284	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtatgtccaggccacCtgtgccacccaaggcacagg	12	14	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127231284	T	T	127231284	2	4	225	1	0	0	0	0	0	0	0	1	849	668	24	4		4	ARF5	7	127231284	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	3954544	127231284	31907379	325	170274											
SND1	27044	broad.mit.edu	37	chr7	127732042	127732046	+	Splice_Site	DEL	CAGCT	-	-													ctattgtctgttttttcttaCagctgaacctgtggcgctat					rs113048090		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	127732046	-	-	127732042	8	5	225	1	0	1	0	1	0	0	1	0	14958	493	17	0		0	SND1	7	127732042	Splice_Site	DEL	CAGCT	TCGA-91-6828-01A-11D-1855-08	500758	127732042	31406621	326	170275											
LEP	3952	broad.mit.edu	37	chr7	127894471	127894471	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatagcagtcagtctcctcCaaacagaaagtcaccggttt	8	12	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127894471	A	A	127894471	2	1	225	1	0	0	0	0	0	0	0	1	8799	581	21	2		2	LEP	7	127894471	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	162429	127894471	31244192	327	170276											
FAM40B	57464	broad.mit.edu	37	chr7	129125678	129125678	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagaatcactgactaagttCttgtcaacaagcatcaatag	6	10	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129125678	A	A	129125678	1	1	225	0	1	0	0	0	0	0	0	0	5612	928	32	3		3	FAM40B	7	129125678	3'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	1231207	129125678	30012985	328	170277											
KLHDC10	23008	broad.mit.edu	37	chr7	129765721	129765721	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagatccatgcatacaaccTtgaaacgaatgcctgggagg	10	10	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129765721	A	A	129765721	3	1	225	1	0	0	0	0	1	0	0	0	8426	1609	56	5	907	5	KLHDC10	7	129765721	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	640043	129765721	29372942	329	170278											
C7orf45	136263	broad.mit.edu	37	chr7	129853460	129853460	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtcccagctactcagaaGgctgaggcaggaggattgct	14	9	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129853460	T	T	129853460	1	4	225	0	1	0	0	0	0	0	0	0	2420	1015	35	2		2	C7orf45	7	129853460	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	87739	129853460	29285203	330	170279											
CPA2	1358	broad.mit.edu	37	chr7	129916550	129916550	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgccagtcacaaaccCtgatggatacgtgttctctc	7	15	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129916550	A	A	129916550	3	1	225	1	0	0	0	0	1	0	0	0	3822	681	24	2	694	2	CPA2	7	129916550	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	63090	129916550	29222113	331	170280											
EXOC4	60412	broad.mit.edu	37	chr7	133602295	133602295	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgctaactgaataccagGcatcatgctacagtgtctct	7	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133602295	T	T	133602295	1	4	225	0	1	0	0	0	0	0	0	0	5348	1218	42	3		3	EXOC4	7	133602295	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	3685745	133602295	25536368	332	170281											
PTN	5764	broad.mit.edu	37	chr7	136936041	136936041	+	Frame_Shift_Del	DEL	G	-	-													gtgacagtcttctggcattcGgcattgtgcagggctcgctt							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	136936041	-	-	136936041	7	5	225	1	0	1	0	1	0	0	0	0	12874	1103	39	0	127	0	PTN	7	136936041	Frame_Shift_Del	DEL	G	TCGA-91-6828-01A-11D-1855-08	3333746	136936041	22202622	333	170282											
DENND2A	27147	broad.mit.edu	37	chr7	140273726	140273726	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggggacccagttccatccCgactcagcttcctagtgtcc	9	15	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140273726	A	A	140273726	3	1	225	1	0	0	0	0	1	0	0	0	4469	652	23	1	1761	1	DENND2A	7	140273726	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3337685	140273726	18864937	334	170283											
MGAM	8972	broad.mit.edu	37	chr7	141738391	141738391	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcttatgggggcccggcctCctcatcactccagttctgga	10	14	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141738391	A	A	141738391	2	1	225	1	0	0	0	0	0	0	0	1	9634	842	30	3		3	MGAM	7	141738391	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	1464665	141738391	17400272	335	170284											
MGAM	8972	broad.mit.edu	37	chr7	141796297	141796297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaagaggcctgagctgGtgggggtcctaagacatggt	18	6	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141796297	T	T	141796297	1	4	225	0	1	0	0	0	0	0	0	0	9634	1276	44	3		3	MGAM	7	141796297	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	57906	141796297	17342366	336	170285											
PRSS1	5644	broad.mit.edu	37	chr7	142458358	142458358	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacaggctgggagcgccacCcctaacatgctattgacttg	10	13	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142458358	A	A	142458358	1	1	225	0	1	0	0	0	0	0	0	0	12720	638	22	2		2	PRSS1	7	142458358	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	662061	142458358	16680305	337	170286											
TRPV6	55503	broad.mit.edu	37	chr7	142575519	142575519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtagcgctgtttccccCatggctcctggcatttacag	10	12	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142575519	A	A	142575519	3	1	225	1	0	0	0	0	1	0	0	0	16725	594	21	2	1995	2	TRPV6	7	142575519	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	117161	142575519	16563144	338	170287											
KEL	3792	broad.mit.edu	37	chr7	142650848	142650848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagatctacggtgctcaGgctctcctccatttccatga	7	15	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142650848	T	T	142650848	1	4	225	0	1	0	0	0	0	0	0	0	8212	1015	35	2		2	KEL	7	142650848	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	75329	142650848	16487815	339	170288											
CLCN1	1180	broad.mit.edu	37	chr7	143043748	143043748	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacaaagaagaaaacaacCcaggtgagaggagatgtgtt	11	8	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143043748	A	A	143043748	2	1	225	1	0	0	0	0	0	0	0	1	3493	610	22	2		2	CLCN1	7	143043748	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	392900	143043748	16094915	340	170289											
CNTNAP2	26047	broad.mit.edu	37	chr7	146997239	146997239	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgtacttaccaggttctgGgttgaatgatggacagtggc	13	7	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146997239	C	C	146997239	3	2	225	1	0	0	0	0	1	0	0	0	3679	1232	43	4	1389	4	CNTNAP2	7	146997239	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3953491	146997239	12141424	341	170290											
GIMAP7	168537	broad.mit.edu	37	chr7	150217054	150217054	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaagttctagagcctcctGacgtgagcatggctgagagt	12	10	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150217054	T	T	150217054	1	4	225	0	1	0	0	0	0	0	0	0	6448	1305	45	3		3	GIMAP7	7	150217054	5'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	3219815	150217054	8921609	342	170291											
GIMAP1	170575	broad.mit.edu	37	chr7	150417162	150417162	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaacgctcagtcccggCaggagtccacgcggaggctc	14	13	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150417162	A	A	150417162	3	1	225	1	0	0	0	0	1	0	0	0	6443	711	25	3	76	3	GIMAP1	7	150417162	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	200108	150417162	8721501	343	170292											
RP1L1	94137	broad.mit.edu	37	chr8	10465877	10465877	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgggcctccttttctgCctccggggcttctgcacctt	11	15	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10465877	A	A	10465877	3	1	225	1	0	0	0	0	1	0	0	0	13644	739	26	3	1475	3	RP1L1	8	10465877	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08		10465877	135898145	344	170293											
ADAM28	10863	broad.mit.edu	37	chr8	24184143	24184143	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccttattctgttggcgttGttcaggtctgtatgatgata	10	7	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24184143	A	A	24184143	3	1	225	1	0	0	0	0	1	0	0	0	246	1377	48	4	1005	4	ADAM28	8	24184143	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	13718266	24184143	122179879	345	170294											
IDO2	169355	broad.mit.edu	37	chr8	39862923	39862923	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagttcagttgttttcctGtgtgaagtctctgtagcatt	9	6	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39862923	T	T	39862923	1	4	225	0	1	0	0	0	0	0	0	0	7572	1392	48	3		3	IDO2	8	39862923	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	15678780	39862923	106501099	346	170295											
ANK1	286	broad.mit.edu	37	chr8	41561686	41561686	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcagacatttaggcaggGttagccagccactagacaga	12	9	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41561686	T	T	41561686	1	4	225	0	1	0	0	0	0	0	0	0	620	1276	44	3		3	ANK1	8	41561686	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1698763	41561686	104802336	347	170296											
KIAA0146	23514	broad.mit.edu	37	chr8	48309124	48309124	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaccattttgcatacaccTcagaaacccacagctaagtt	6	12	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48309124	A	A	48309124	2	1	225	1	0	0	0	0	0	0	0	1	8227	1538	54	5		5	KIAA0146	8	48309124	Silent	SNP	T	TCGA-91-6828-01A-11D-1855-08	6747438	48309124	98054898	348	170297											
CEBPD	1052	broad.mit.edu	37	chr8	48650524	48650524	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgatggcgctctcgtcgtcGtacatggcgggggcggcggc	18	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48650524	A	A	48650524	2	1	225	1	0	0	0	0	0	0	0	1	3231	1140	40	4		4	CEBPD	8	48650524	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	341400	48650524	97713498	349	170298											
PRKDC	5591	broad.mit.edu	37	chr8	48701621	48701621	+	Intron	DEL	A	-	-													tgctccaatcctgtcaggggAaaaaaaaagtaagaaaaaaa					rs34211555		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48701621	-	-	48701621	6	5	225	0	1	1	0	1	0	0	0	0	12627	261	9	0		0	PRKDC	8	48701621	Intron	DEL	A	TCGA-91-6828-01A-11D-1855-08	51097	48701621	97662401	350	170299											
SNTG1	54212	broad.mit.edu	37	chr8	51617388	51617388	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cctagagttctaatatcattCcaaagtagtgtaaaaataca	5	7	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51617388	T	T	51617388	1	4	225	0	1	0	0	0	0	0	0	0	14988	870	30	4		4	SNTG1	8	51617388	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2915767	51617388	94746634	351	170300											
PXDNL	137902	broad.mit.edu	37	chr8	52370103	52370103	+	Frame_Shift_Del	DEL	C	-	-													ggcactctgtgtcttggcttCcccagcggaatttctggcca							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	52370103	-	-	52370103	7	5	225	1	0	1	0	1	0	0	0	0	12956	864	30	0	3514	0	PXDNL	8	52370103	Frame_Shift_Del	DEL	C	TCGA-91-6828-01A-11D-1855-08	752715	52370103	93993919	352	170301											
RB1CC1	9821	broad.mit.edu	37	chr8	53598099	53598099	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactagaagaaacaagagaaGtgatcaattttacaaatgca	7	5	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53598099	T	T	53598099	1	4	225	0	1	0	0	0	0	0	0	0	13207	1044	36	3		3	RB1CC1	8	53598099	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1227996	53598099	92765923	353	170302											
TCEA1	6917	broad.mit.edu	37	chr8	54891760	54891761	+	Intron	INS	-	TA	TA													agggggcaataccactcagtINStatagacaccttctatatat							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TA	54891761	TA	TA	54891760	6	5	225	0	1	1	1	0	0	0	0	0	15789	1740	60	0		0	TCEA1	8	54891760	Intron	INS	-	TCGA-91-6828-01A-11D-1855-08	1293661	54891760	91472262	354	170303											
NSMAF	8439	broad.mit.edu	37	chr8	59511849	59511849	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tagccaaatattagatcaatCcactcgtgaaggtgttcaga	8	8	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59511849	G	G	59511849	3	3	225	1	0	0	0	0	1	0	0	0	10769	856	30	4	1278	4	NSMAF	8	59511849	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	4620089	59511849	86852173	355	170304											
ASPH	444	broad.mit.edu	37	chr8	62491863	62491863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaggctgccctgcagcGggccaagcaggacatggcac	16	13	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62491863	T	T	62491863	1	4	225	0	1	0	0	0	0	0	0	0	1057	1131	39	1		1	ASPH	8	62491863	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2980014	62491863	83872159	356	170305											
CSPP1	79848	broad.mit.edu	37	chr8	68031019	68031019	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagcctgcagcttatgttAgtgctcctgtcacccaccaa	7	14	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68031019	G	G	68031019	3	3	225	1	0	0	0	0	1	0	0	0	3996	420	15	5	1808	5	CSPP1	8	68031019	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	5539156	68031019	78333003	357	170306											
SULF1	23213	broad.mit.edu	37	chr8	70516969	70516969	+	Intron	DEL	G	-	-													tgacagggtaaaaaaaaaaaGggggcaggactcagggaccg					rs149602643		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70516969	-	-	70516969	6	5	225	0	1	1	0	1	0	0	0	0	15488	1015	35	0		0	SULF1	8	70516969	Intron	DEL	G	TCGA-91-6828-01A-11D-1855-08	2485950	70516969	75847053	358	170307											
EYA1	2138	broad.mit.edu	37	chr8	72156924	72156924	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagggaaactgaagtgggtgGatcctaaaataagaatatga	12	3	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72156924	T	T	72156924	3	4	225	1	0	0	0	0	1	0	0	0	5371	1174	41	3	752	3	EYA1	8	72156924	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1639955	72156924	74207098	359	170308											
TRPA1	8989	broad.mit.edu	37	chr8	72958722	72958722	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaaaaaaagaaactatTtagataatgaaaacattgaa	5	2	0	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72958722	G	G	72958722	1	3	225	0	1	0	0	0	0	0	0	0	16702	1856	64	5		5	TRPA1	8	72958722	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	801798	72958722	73405300	360	170309											
JPH1	56704	broad.mit.edu	37	chr8	75149448	75149448	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaggcgattcttacctttcCtaattccaatcaagttagaa	5	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75149448	G	G	75149448	1	3	225	0	1	0	0	0	0	0	0	0	8030	696	24	4		4	JPH1	8	75149448	3'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	2190726	75149448	71214574	361	170310											
PI15	51050	broad.mit.edu	37	chr8	75757410	75757410	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatggtatgatgaagtgaAagattatgcttttccatatc	9	6	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75757410	C	C	75757410	3	2	225	1	0	0	0	0	1	0	0	0	11963	14	1	5	450	5	PI15	8	75757410	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	607962	75757410	70606612	362	170311											
ZFHX4	79776	broad.mit.edu	37	chr8	77766034	77766034	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaatcaagcagaaacaaaaGataatgaaaaaagagaactc	7	5	1	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77766034	T	T	77766034	3	4	225	1	0	0	0	0	1	0	0	0	17761	942	33	3	6911	3	ZFHX4	8	77766034	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2008624	77766034	68597988	363	170312											
ZFHX4	79776	broad.mit.edu	37	chr8	77766282	77766282	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaacggatgcagctaaaaaCgctgctgcccctgcagcaag	10	13	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77766282	A	A	77766282	3	1	225	1	0	0	0	0	1	0	0	0	17761	535	19	3	7159	3	ZFHX4	8	77766282	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	248	77766282	68597740	364	170313											
FABP9	646480	broad.mit.edu	37	chr8	82373577	82373577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgttagtctatataccCtaggatcacaaaaggaagat	8	6	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82373577	A	A	82373577	1	1	225	0	1	0	0	0	0	0	0	0	5409	696	24	2		2	FABP9	8	82373577	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	4607295	82373577	63990445	365	170314											
E2F5	1875	broad.mit.edu	37	chr8	86125862	86125862	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tacaaattgttactaaatgaGaatatttcaaaatacacatt	3	5	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86125862	C	C	86125862	1	2	225	0	1	0	0	0	0	0	0	0	4910	957	33	4		4	E2F5	8	86125862	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	3752285	86125862	60238160	366	170315											
SLC26A7	115111	broad.mit.edu	37	chr8	92350327	92350327	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaattgttttaaggtgtttGagaggtcagtaatgtatata	10	1	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92350327	A	A	92350327	1	1	225	0	1	0	0	0	0	0	0	0	14636	1305	45	4		4	SLC26A7	8	92350327	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	6224465	92350327	54013695	367	170316											
SNX31	169166	broad.mit.edu	37	chr8	101620895	101620895	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaccctatgaaccagggcCcccttttccaacaaagccac	5	17	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101620895	A	A	101620895	1	1	225	0	1	0	0	0	0	0	0	0	15015	638	22	2		2	SNX31	8	101620895	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	9270568	101620895	44743127	368	170317											
NCALD	83988	broad.mit.edu	37	chr8	102884221	102884221	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctctggtcaggttcatgCcgccaaacaccagaggaccg	10	14	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102884221	A	A	102884221	1	1	225	0	1	0	0	0	0	0	0	0	10296	754	26	3		3	NCALD	8	102884221	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1263326	102884221	43479801	369	170318											
ODF1	4956	broad.mit.edu	37	chr8	103572936	103572936	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacatactcctatgggctcGgcagctgtgtcaagatcgag	11	10	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103572936	T	T	103572936	3	4	225	1	0	0	0	0	1	0	0	0	10921	1116	39	1	583	1	ODF1	8	103572936	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	688715	103572936	42791086	370	170319											
RIMS2	9699	broad.mit.edu	37	chr8	104973292	104973292	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgctattgtttactttataGggtcaaagagaataagtgat	9	3	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104973292	C	C	104973292	5	2	225	1	0	0	0	0	0	0	1	0	13479	1014	35	4	2885	4	RIMS2	8	104973292	Splice_Site	SNP	G	TCGA-91-6828-01A-11D-1855-08	1400356	104973292	41390730	371	170320											
PKHD1L1	93035	broad.mit.edu	37	chr8	110431256	110431256	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tttactctataaaattttaaTgctttctaaagtgtatttgc	4	5	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110431256	A	A	110431256	1	1	225	0	1	0	0	0	0	0	0	0	12067	1479	51	5		5	PKHD1L1	8	110431256	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	5457964	110431256	35932766	372	170321											
PKHD1L1	93035	broad.mit.edu	37	chr8	110523010	110523010	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcatggatttaggcccAcaggatcatggctggtgtgc	13	8	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110523010	T	T	110523010	2	4	225	1	0	0	0	0	0	0	0	1	12067	146	6	5		5	PKHD1L1	8	110523010	Silent	SNP	A	TCGA-91-6828-01A-11D-1855-08	91754	110523010	35841012	373	170322											
CSMD3	114788	broad.mit.edu	37	chr8	113240830	113240830	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tgttgcaggggtggttagggGaaataaatttttcagtgtct	14	3	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113240830	C	C	113240830	1	2	225	0	1	0	0	0	0	0	0	0	3980	1189	41	4		4	CSMD3	8	113240830	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2717820	113240830	33123192	374	170323											
RAD21	5885	broad.mit.edu	37	chr8	117861113	117861113	+	Intron	DEL	T	-	-													ttctgtttccagcatctaacTttttttttttcagggaacaa							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	117861113	-	-	117861113	6	5	225	0	1	1	0	1	0	0	0	0	13089	1624	56	0		0	RAD21	8	117861113	Intron	DEL	T	TCGA-91-6828-01A-11D-1855-08	4620283	117861113	28502909	375	170324											
COL14A1	7373	broad.mit.edu	37	chr8	121209992	121209992	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccagtttcttgagtagcCcactagatttttgagtaacc	7	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121209992	A	A	121209992	1	1	225	0	1	0	0	0	0	0	0	0	3703	638	22	2		2	COL14A1	8	121209992	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	3348879	121209992	25154030	376	170325											
HAS2	3037	broad.mit.edu	37	chr8	122641478	122641478	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attatccgtttggataaactGgtagccaacaatataagcag	8	7	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122641478	A	A	122641478	4	1	225	1	0	0	0	0	0	1	0	0	7028	1357	47	4	1567	4	HAS2	8	122641478	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1431486	122641478	23722544	377	170326											
FER1L6	654463	broad.mit.edu	37	chr8	124992922	124992922	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcaagttgccttccaaGgacaaagactccaaatcttc	7	12	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124992922	T	T	124992922	3	4	225	1	0	0	0	0	1	0	0	0	5872	991	35	2	1319	2	FER1L6	8	124992922	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2351444	124992922	21371100	378	170327											
COL22A1	169044	broad.mit.edu	37	chr8	139608945	139608945	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagaggtaaccaagtgaaagCtgaaggactagtcctagaga	12	6	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139608945	A	A	139608945	1	1	225	0	1	0	0	0	0	0	0	0	3713	812	28	3		3	COL22A1	8	139608945	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	14616023	139608945	6755077	379	170328											
FLJ43860	389690	broad.mit.edu	37	chr8	142451731	142451731	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgacctgccctggccccacCgtacctggcaaggaggccca	11	18	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142451731	T	T	142451731	1	4	225	0	1	0	0	0	0	0	0	0	5987	667	23	4		4	FLJ43860	8	142451731	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2842786	142451731	3912291	380	170329											
CYP11B2	1585	broad.mit.edu	37	chr8	143996605	143996605	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaacctctgcacggccttgGgcgacagcacatctgggttc	13	13	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143996605	T	T	143996605	3	4	225	1	0	0	0	0	1	0	0	0	4179	1232	43	2	1087	2	CYP11B2	8	143996605	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1544874	143996605	2367417	381	170330											
SCRIB	23513	broad.mit.edu	37	chr8	144876106	144876106	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagcagggagattcagccatCttccctccagctgctccaga	10	14	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144876106	T	T	144876106	2	4	225	1	0	0	0	0	0	0	0	1	14050	912	32	4		4	SCRIB	8	144876106	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	879501	144876106	1487916	382	170331											
PLEC	5339	broad.mit.edu	37	chr8	145012854	145012854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttctgcacacgatccCgctcatctgggggagacaag	10	12	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145012854	A	A	145012854	3	1	225	1	0	0	0	0	1	0	0	0	12147	652	23	1	13648	1	PLEC	8	145012854	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	136748	145012854	1351168	383	170332											
PARP10	84875	broad.mit.edu	37	chr8	145060702	145060702	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtactggggctcagatGcttcctctcctgctgcagcc	12	14	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145060702	C	C	145060702	1	2	225	0	1	0	0	0	0	0	0	0	11549	1334	46	4		4	PARP10	8	145060702	5'Flank	SNP	G	TCGA-91-6828-01A-11D-1855-08	47848	145060702	1303320	384	170333											
CYC1	1537	broad.mit.edu	37	chr8	145151255	145151255	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggtggaggttcaagacGgccccaatgaagatggggag	18	7	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145151255	A	A	145151255	3	1	225	1	0	0	0	0	1	0	0	0	4168	1116	39	4	483	4	CYC1	8	145151255	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	90553	145151255	1212767	385	170334											
MAF1	84232	broad.mit.edu	37	chr8	145161489	145161489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttggactcagatcccttcGgggaggatggtagcctctgg	14	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145161489	T	T	145161489	3	4	225	1	0	0	0	0	1	0	0	0	9244	1116	39	1	550	1	MAF1	8	145161489	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	10234	145161489	1202533	386	170335											
MAF1	84232	broad.mit.edu	37	chr8	145161786	145161786	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacgagctggacatggaGctgggggaggaggaggtgga	22	5	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145161786	C	C	145161786	3	2	225	1	0	0	0	0	1	0	0	0	9244	962	34	4	691	4	MAF1	8	145161786	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	297	145161786	1202236	387	170336											
CPSF1	29894	broad.mit.edu	37	chr8	145622834	145622834	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggctgaagagggagccCgaatccccatacagcatctc	12	13	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145622834	A	A	145622834	2	1	225	1	0	0	0	0	0	0	0	1	3856	639	23	1		1	CPSF1	8	145622834	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	461048	145622834	741188	388	170337											
ZNF34	80778	broad.mit.edu	37	chr8	145999007	145999007	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattcatagggcttctctcCagtgtggcttctctgatgtt	10	10	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145999007	A	A	145999007	4	1	225	1	0	0	0	0	0	1	0	0	17982	603	21	2	359	2	ZNF34	8	145999007	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	376173	145999007	365015	389	170338											
SMARCA2	6595	broad.mit.edu	37	chr9	2047450	2047450	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccagaaaccgcaaggcctgGaccccgtggaaattctgcaa	10	13	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2047450	T	T	2047450	3	4	225	1	0	0	0	0	1	0	0	0	14883	1174	41	3	1026	3	SMARCA2	9	2047450	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08		2047450	139165981	390	170339											
GLDC	2731	broad.mit.edu	37	chr9	6588676	6588676	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccagtttcttcatgtacCggacaatgtttgtttcagag	8	8	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6588676	A	A	6588676	3	1	225	1	0	0	0	0	1	0	0	0	6497	652	23	1	1507	1	GLDC	9	6588676	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	4541226	6588676	134624755	391	170340											
MPDZ	8777	broad.mit.edu	37	chr9	13223519	13223519	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattcctgcatagtaaccaaAaccttcagaatgtgggatca	7	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13223519	G	G	13223519	1	3	225	0	1	0	0	0	0	0	0	0	9816	29	1	5		5	MPDZ	9	13223519	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	6634843	13223519	127989912	392	170341											
FREM1	158326	broad.mit.edu	37	chr9	14846066	14846066	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcccaagtgatggctcgagActgcccctcaaggagactca	10	13	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14846066	T	T	14846066	3	4	225	1	0	0	0	0	1	0	0	0	6104	275	10	5	5424	5	FREM1	9	14846066	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	1622547	14846066	126367365	393	170342											
PSIP1	11168	broad.mit.edu	37	chr9	15471116	15471116	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcagtccaatgagtctgtatCaagatcttcatctcttgttt	6	9	6	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15471116	G	G	15471116	1	3	225	0	1	0	0	0	0	0	0	0	12769	841	29	4		4	PSIP1	9	15471116	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	625050	15471116	125742315	394	170343											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18905849	18905849	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgccagacacgggatGgcatcaccttaccatcagag	9	13	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18905849	A	A	18905849	3	1	225	1	0	0	0	0	1	0	0	0	274	1348	47	4	5031	4	ADAMTSL1	9	18905849	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3434733	18905849	122307582	395	170344											
AQP7	364	broad.mit.edu	37	chr9	33385892	33385892	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagatgctgtggcagctcaCctgggcccctccccaagcca	11	17	1	1	rs145467829	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33385892	G	G	33385892	1	3	225	0	1	0	0	0	0	0	0	0	833	522	18	4		4	AQP7	9	33385892	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	14480043	33385892	107827539	396	170345											
FAM166B	730112	broad.mit.edu	37	chr9	35563228	35563228	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgacaggtagactctccCtgggaacctcaggagatctt	11	12	3	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35563228	A	A	35563228	3	1	225	1	0	0	0	0	1	0	0	0	5527	681	24	2	445	2	FAM166B	9	35563228	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2177336	35563228	105650203	397	170346											
TMEM8B	51754	broad.mit.edu	37	chr9	35846183	35846183	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctagggttccgggaagtgGgagcaggtgggtgagggttc	22	5	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35846183	A	A	35846183	1	1	225	0	1	0	0	0	0	0	0	0	16338	1247	43	4		4	TMEM8B	9	35846183	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	282955	35846183	105367248	398	170347											
ALDH1B1	219	broad.mit.edu	37	chr9	38396338	38396338	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggttggaaacttgcccCggcactcgccacaggcaaca	12	14	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38396338	A	A	38396338	3	1	225	1	0	0	0	0	1	0	0	0	493	652	23	1	595	1	ALDH1B1	9	38396338	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2550155	38396338	102817093	399	170348											
FAM75A5	727905	broad.mit.edu	37	chr9	65508200	65508200	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cgccctactggacactgggaGacacgatgacgtacggagac	13	12	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65508200	A	A	65508200	1	1	225	0	1	0	0	0	0	0	0	0	5673	957	33	4		4	FAM75A5	9	65508200	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	27111862	65508200	75705231	400	170349											
C9orf71	169693	broad.mit.edu	37	chr9	71152351	71152351	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agaggcctctctctctgcagGacagctctgcttttccacct	8	15	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71152351	T	T	71152351	3	4	225	1	0	0	0	0	1	0	0	0	2520	1174	41	3	179	3	C9orf71	9	71152351	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	5644151	71152351	70061080	401	170350											
FAM189A2	9413	broad.mit.edu	37	chr9	71998479	71998479	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagagcaaagccagtatccGggcatcactgcagtcacgtg	11	11	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71998479	T	T	71998479	1	4	225	0	1	0	0	0	0	0	0	0	5563	1131	39	1		1	FAM189A2	9	71998479	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	846128	71998479	69214952	402	170351											
APBA1	320	broad.mit.edu	37	chr9	72130971	72130971	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcacagtccctggtggggcTaatgtcctggcgcatgaccc	13	13	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72130971	C	C	72130971	3	2	225	1	0	0	0	0	1	0	0	0	758	1522	53	5	1405	5	APBA1	9	72130971	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	132492	72130971	69082460	403	170352											
TRPM3	80036	broad.mit.edu	37	chr9	73399097	73399097	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccatcacagacaaccactgGcacgggaggggtgtctcgaa	12	13	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73399097	C	C	73399097	3	2	225	1	0	0	0	0	1	0	0	0	16712	1203	42	4	4171	4	TRPM3	9	73399097	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1268126	73399097	67814334	404	170353											
TRPM6	140803	broad.mit.edu	37	chr9	77353458	77353458	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttatacttccggaactcccCtgtcatatacttctcaatgg	6	12	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77353458	A	A	77353458	3	1	225	1	0	0	0	0	1	0	0	0	16715	681	24	2	443	2	TRPM6	9	77353458	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3954361	77353458	63859973	405	170354											
OSTF1	26578	broad.mit.edu	37	chr9	77742468	77742468	+	Intron	DEL	T	-	-													aaaatcacatggagtcaaacTtttttttttcttctagccag							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77742468	-	-	77742468	6	5	225	0	1	1	0	1	0	0	0	0	11391	1624	56	0		0	OSTF1	9	77742468	Intron	DEL	T	TCGA-91-6828-01A-11D-1855-08	389010	77742468	63470963	406	170355											
PCSK5	5125	broad.mit.edu	37	chr9	78686767	78686767	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgatggcaagactgtggacGgaccagcccccctcacccgg	12	15	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78686767	C	C	78686767	3	2	225	1	0	0	0	0	1	0	0	0	11697	1117	39	4	873	4	PCSK5	9	78686767	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	944299	78686767	62526664	407	170356											
LPPR1	54886	broad.mit.edu	37	chr9	104071741	104071741	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttactccgccttatatgccAcggtgagtgtgcaagtcttg	10	10	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104071741	G	G	104071741	3	3	225	1	0	0	0	0	1	0	0	0	9011	159	6	5	648	5	LPPR1	9	104071741	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	25384974	104071741	37141690	408	170357											
RAD23B	5887	broad.mit.edu	37	chr9	110068802	110068802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccccacttccacacctgCatccatcactccagcatcag	5	20	2	0	rs111972101		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110068802	A	A	110068802	3	1	225	1	0	0	0	0	1	0	0	0	13091	710	25	3	385	3	RAD23B	9	110068802	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5997061	110068802	31144629	409	170358											
SVEP1	79987	broad.mit.edu	37	chr9	113220676	113220676	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatcctggtccttttccTgtgtgtgatgtgtaaaatga	9	7	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113220676	A	A	113220676	1	1	225	0	1	0	0	0	0	0	0	0	15538	1595	55	5		5	SVEP1	9	113220676	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	3151874	113220676	27992755	410	170359											
MUSK	4593	broad.mit.edu	37	chr9	113524456	113524456	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctttaatttgacttcctGtgggaacttcctttcctgtt	6	11	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113524456	T	T	113524456	1	4	225	0	1	0	0	0	0	0	0	0	10083	1392	48	3		3	MUSK	9	113524456	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	303780	113524456	27688975	411	170360											
ASTN2	23245	broad.mit.edu	37	chr9	119737396	119737396	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcaactaaacagcaagaAcactccttaggggttcctgt	7	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	119737396	G	G	119737396	1	3	225	0	1	0	0	0	0	0	0	0	1069	58	2	5		5	ASTN2	9	119737396	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	6212940	119737396	21476035	412	170361											
STRBP	55342	broad.mit.edu	37	chr9	125920470	125920470	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcccttagaacatctagCtaaaaagacactcataaatt	4	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125920470	A	A	125920470	1	1	225	0	1	0	0	0	0	0	0	0	15445	812	28	3		3	STRBP	9	125920470	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	6183074	125920470	15292961	413	170362											
NEK6	10783	broad.mit.edu	37	chr9	127074763	127074763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagcctggctgctcacGgaggccctctgtcccccgtt	12	17	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127074763	T	T	127074763	1	4	225	0	1	0	0	0	0	0	0	0	10423	1131	39	1		1	NEK6	9	127074763	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1154293	127074763	14138668	414	170363											
COQ4	51117	broad.mit.edu	37	chr9	131088030	131088031	+	Intron	INS	-	T	T													acctacctttgcccacacccINStcccaatgcccaagtcttgc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131088031	T	T	131088030	6	5	225	0	1	1	1	0	0	0	0	0	3779	696	24	0		0	COQ4	9	131088030	Intron	INS	-	TCGA-91-6828-01A-11D-1855-08	4013267	131088030	10125401	415	170364											
NUP188	23511	broad.mit.edu	37	chr9	131743636	131743636	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagatggaactctttggCggagacaaacacccaaactc	9	10	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131743636	T	T	131743636	3	4	225	1	0	0	0	0	1	0	0	0	10853	759	27	4	1541	4	NUP188	9	131743636	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	655606	131743636	9469795	416	170365											
NUP214	8021	broad.mit.edu	37	chr9	134073549	134073549	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactctggcactgcagcatcTagtactagtcttgtagcact	8	11	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	134073549	C	C	134073549	2	2	225	1	0	0	0	0	0	0	0	1	10857	1509	53	5		5	NUP214	9	134073549	Silent	SNP	T	TCGA-91-6828-01A-11D-1855-08	2329913	134073549	7139882	417	170366											
ANAPC2	29882	broad.mit.edu	37	chr9	140077570	140077570	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctgggccagctgcagCcctcacctcaggtagcggcg	14	16	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140077570	A	A	140077570	1	1	225	0	1	0	0	0	0	0	0	0	603	754	26	3		3	ANAPC2	9	140077570	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	6004021	140077570	1135861	418	170367											
ENTPD8	377841	broad.mit.edu	37	chr9	140331211	140331211	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgaaggagtactgggcaCagaaggggccactcagctgg	16	9	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140331211	G	G	140331211	1	3	225	0	1	0	0	0	0	0	0	0	5187	493	17	4		4	ENTPD8	9	140331211	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	253641	140331211	882220	419	170368											
CACNA1B	774	broad.mit.edu	37	chr9	140809117	140809117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccccaggtttgcaggtgGtgctcaagtccatcatgaag	13	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140809117	T	T	140809117	3	4	225	1	0	0	0	0	1	0	0	0	2565	1261	44	3	652	3	CACNA1B	9	140809117	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	477906	140809117	404314	420	170369											
C10orf18	54906	broad.mit.edu	37	chr10	5788306	5788306	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagtggcactgttactcaAgccacattcaccaggactta	7	12	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5788306	G	G	5788306	2	3	225	1	0	0	0	0	0	0	0	1	1607	69	3	5		5	C10orf18	10	5788306	Silent	SNP	A	TCGA-91-6828-01A-11D-1855-08		5788306	129746441	421	170370											
ITGA8	8516	broad.mit.edu	37	chr10	15573153	15573153	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atagggatcattttttctctGaaagtaaaagtatttattta	6	3	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15573153	A	A	15573153	1	1	225	0	1	0	0	0	0	0	0	0	7952	1305	45	4		4	ITGA8	10	15573153	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	9784847	15573153	119961594	422	170371											
ITGA8	8516	broad.mit.edu	37	chr10	15639326	15639326	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaagaacagggggtttaGggggcaggataaatgacatc	15	5	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15639326	A	A	15639326	1	1	225	0	1	0	0	0	0	0	0	0	7952	1015	35	4		4	ITGA8	10	15639326	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	66173	15639326	119895421	423	170372											
CACNB2	783	broad.mit.edu	37	chr10	18795447	18795447	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgggtgacatagtacctaGttccagaaaatcaacacctc	7	10	1	2	rs149253719	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18795447	C	C	18795447	3	2	225	1	0	0	0	0	1	0	0	0	2579	1029	36	4	883	4	CACNB2	10	18795447	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3156121	18795447	116739300	424	170373											
CACNB2	783	broad.mit.edu	37	chr10	18795465	18795465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttccagaaaatcaacacCtccatcatctggtaagtagg	7	10	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18795465	A	A	18795465	3	1	225	1	0	0	0	0	1	0	0	0	2579	681	24	2	901	2	CACNB2	10	18795465	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	18	18795465	116739282	425	170374											
NEBL	10529	broad.mit.edu	37	chr10	21115344	21115344	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagttttggtttgcttttAgaaaagataattaatgctgt	8	2	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21115344	C	C	21115344	1	2	225	0	1	0	0	0	0	0	0	0	10398	435	15	5		5	NEBL	10	21115344	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	2319879	21115344	114419403	426	170375											
GPR158	57512	broad.mit.edu	37	chr10	25885784	25885784	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatacaggcaggcgtgtgTgggttggggtgcgtgtgtgc	19	5	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25885784	C	C	25885784	1	2	225	0	1	0	0	0	0	0	0	0	6728	1711	59	5		5	GPR158	10	25885784	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	4770440	25885784	109648963	427	170376											
ANKRD26	22852	broad.mit.edu	37	chr10	27375513	27375513	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaggtatcctttcttcttTatattctgaaattagttggt	6	5	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27375513	G	G	27375513	3	3	225	1	0	0	0	0	1	0	0	0	654	1763	61	5	4588	5	ANKRD26	10	27375513	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1489729	27375513	108159234	428	170377											
MTPAP	55149	broad.mit.edu	37	chr10	30658022	30658022	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctccagctcctgtaccCgatgcctgtcatgcttcttc	6	17	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30658022	A	A	30658022	1	1	225	0	1	0	0	0	0	0	0	0	10050	667	23	1		1	MTPAP	10	30658022	5'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	3282509	30658022	104876725	429	170378											
ZNF22	7570	broad.mit.edu	37	chr10	45498738	45498738	+	5'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctacacacagaaaattctgaGctgtacacctctaggaaatg	7	10	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45498738	C	C	45498738	1	2	225	0	1	0	0	0	0	0	0	0	17900	986	34	4		4	ZNF22	10	45498738	5'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	14840716	45498738	90036009	430	170379											
PPYR1	5540	broad.mit.edu	37	chr10	47087519	47087519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcctgcagaggcaggggCgcgtgtttcacaagggcacc	17	12	1	1	rs151042454	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47087519	A	A	47087519	3	1	225	1	0	0	0	0	1	0	0	0	12517	768	27	3	738	3	PPYR1	10	47087519	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1588781	47087519	88447228	431	170380											
GDF2	2658	broad.mit.edu	37	chr10	48414558	48414558	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggtgggcatctgctggaGggtctgtttccatgacactg	15	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48414558	T	T	48414558	1	4	225	0	1	0	0	0	0	0	0	0	6378	1015	35	2		2	GDF2	10	48414558	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1327039	48414558	87120189	432	170381											
CHAT	1103	broad.mit.edu	37	chr10	50833510	50833510	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcctcccttcccactcctCtccttcagccactccattcc	2	23	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50833510	G	G	50833510	1	3	225	0	1	0	0	0	0	0	0	0	3344	928	32	4		4	CHAT	10	50833510	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2418952	50833510	84701237	433	170382											
DNA2	1763	broad.mit.edu	37	chr10	70202766	70202766	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aacattagacaccaaaggctGaaatattctaagtgtgtttg	8	6	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70202766	A	A	70202766	2	1	225	1	0	0	0	0	0	0	0	1	4636	1281	45	4		4	DNA2	10	70202766	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	19369256	70202766	65331981	434	170383											
SLC25A16	8034	broad.mit.edu	37	chr10	70243337	70243337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatacttcatagtatccCgcatggtactgaaagacaat	7	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70243337	A	A	70243337	3	1	225	1	0	0	0	0	1	0	0	0	14592	652	23	1	151	1	SLC25A16	10	70243337	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	40571	70243337	65291410	435	170384											
HTR7	3363	broad.mit.edu	37	chr10	92616928	92616928	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagggtcatgatcgaggcCgtgcagcacatgacgtccat	12	12	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92616928	A	A	92616928	2	1	225	1	0	0	0	0	0	0	0	1	7522	639	23	1		1	HTR7	10	92616928	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	22373591	92616928	42917819	436	170385											
DNTT	1791	broad.mit.edu	37	chr10	98078206	98078206	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcagctcacaaccagagCtcctcgatgtctcctggctg	9	14	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98078206	A	A	98078206	3	1	225	1	0	0	0	0	1	0	0	0	4720	797	28	3	307	3	DNTT	10	98078206	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5461278	98078206	37456541	437	170386											
TLL2	7093	broad.mit.edu	37	chr10	98144286	98144286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagggaccccagagcctGgagtctgcaaagccgcctca	13	15	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98144286	T	T	98144286	1	4	225	0	1	0	0	0	0	0	0	0	16069	1363	47	2		2	TLL2	10	98144286	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	66080	98144286	37390461	438	170387											
C10orf28	27291	broad.mit.edu	37	chr10	99969246	99969246	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctcattttacagagtcaAcaggaaagttgatagagagc	9	7	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99969246	G	G	99969246	3	3	225	1	0	0	0	0	1	0	0	0	1612	43	2	5	1377	5	C10orf28	10	99969246	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	1824960	99969246	35565501	439	170388											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105362429	105362429	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggaccttctggtaggcgCtgcatgtcatgtacgaggtg	14	10	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	105362429	G	G	105362429	3	3	225	1	0	0	0	0	1	0	0	0	14369	797	28	4	859	4	SH3PXD2A	10	105362429	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5393183	105362429	30172318	440	170389											
SORCS1	114815	broad.mit.edu	37	chr10	108337046	108337046	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactatggaaatacttcctGgcaaaataggaaacagaaca	7	8	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108337046	T	T	108337046	1	4	225	0	1	0	0	0	0	0	0	0	15044	1363	47	2		2	SORCS1	10	108337046	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	2974617	108337046	27197701	441	170390											
EMX2	2018	broad.mit.edu	37	chr10	119303313	119303313	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcgcgggccagcgcgcccTgttgggaaactaggcggcgc	17	14	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119303313	C	C	119303313	1	2	225	0	1	0	0	0	0	0	0	0	5150	1595	55	5		5	EMX2	10	119303313	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	10966267	119303313	16231434	442	170391											
SEC23IP	11196	broad.mit.edu	37	chr10	121678942	121678942	+	Intron	DEL	T	-	-													gcttgtaatgtttttcatacTtttttttttaaagatgcctg							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	121678942	-	-	121678942	6	5	225	0	1	1	0	1	0	0	0	0	14106	1624	56	0		0	SEC23IP	10	121678942	Intron	DEL	T	TCGA-91-6828-01A-11D-1855-08	2375629	121678942	13855805	443	170392											
NSMCE4A	54780	broad.mit.edu	37	chr10	123718650	123718650	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgcaaatcttaacagcaCaaatttaatcaatccagaga	5	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123718650	A	A	123718650	1	1	225	0	1	0	0	0	0	0	0	0	10772	493	17	3		3	NSMCE4A	10	123718650	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2039708	123718650	11816097	444	170393											
BCCIP	56647	broad.mit.edu	37	chr10	127516263	127516263	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agttctttattctgttcatgCtgggcctcaccatgcttgta	8	10	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	127516263	G	G	127516263	1	3	225	0	1	0	0	0	0	0	0	0	1361	812	28	4		4	BCCIP	10	127516263	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	3797613	127516263	8018484	445	170394											
SYCE1	93426	broad.mit.edu	37	chr10	135367822	135367822	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatgtcactggtctacctGgtctgggagcctgtcaagaa	11	11	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135367822	T	T	135367822	3	4	225	1	0	0	0	0	1	0	0	0	15546	1348	47	2	31	2	SYCE1	10	135367822	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	7851559	135367822	166925	446	170395											
PHRF1	57661	broad.mit.edu	37	chr11	601474	601474	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggtgcgtgtggtcccgctGtaccggctccttgggctccg	15	15	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	601474	C	C	601474	1	2	225	0	1	0	0	0	0	0	0	0	11956	1392	48	4		4	PHRF1	11	601474	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08		601474	134405042	447	170396											
OR52E2	119678	broad.mit.edu	37	chr11	5080209	5080209	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaatatgcacataagaaaGggcaatgactgtgatgtcaa	10	5	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5080209	C	C	5080209	3	2	225	1	0	0	0	0	1	0	0	0	11209	1000	35	4	331	4	OR52E2	11	5080209	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	4478735	5080209	129926307	448	170397											
UBQLN3	50613	broad.mit.edu	37	chr11	5529784	5529784	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccttataatacccagaaaGtttggaaacctatttctaat	5	8	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5529784	C	C	5529784	3	2	225	1	0	0	0	0	1	0	0	0	17024	1020	36	4	966	4	UBQLN3	11	5529784	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	449575	5529784	129476732	449	170398											
DNHD1	144132	broad.mit.edu	37	chr11	6520131	6520131	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcggacatccctgtacGgtatgaaagcagtgacactg	13	10	0	2	rs142166265		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6520131	T	T	6520131	3	4	225	1	0	0	0	0	1	0	0	0	4708	1116	39	1	688	1	DNHD1	11	6520131	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	990347	6520131	128486385	450	170399											
NLRP14	338323	broad.mit.edu	37	chr11	7083435	7083435	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgataaattagaccctcccAtgtatgtcctggattgtaga	8	9	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7083435	C	C	7083435	1	2	225	0	1	0	0	0	0	0	0	0	10571	232	8	5		5	NLRP14	11	7083435	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	563304	7083435	127923081	451	170400											
OLFML1	283298	broad.mit.edu	37	chr11	7530834	7530834	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagctccccggaagcaaatCctaacactttcctggcaggg	9	15	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7530834	A	A	7530834	2	1	225	1	0	0	0	0	0	0	0	1	10951	845	30	3		3	OLFML1	11	7530834	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	447399	7530834	127475682	452	170401											
NLRP10	338322	broad.mit.edu	37	chr11	7981515	7981515	+	Frame_Shift_Del	DEL	A	-	-													atagattccatctgttctttAaaatgcttcagatcctgcgc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7981515	-	-	7981515	7	5	225	1	0	1	0	1	0	0	0	0	10567	359	13	0	327	0	NLRP10	11	7981515	Frame_Shift_Del	DEL	A	TCGA-91-6828-01A-11D-1855-08	450681	7981515	127025001	453	170402											
USP47	55031	broad.mit.edu	37	chr11	11976665	11976665	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaagtttctaccctgaatGtctggcctctttatatctgt	6	10	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11976665	T	T	11976665	3	4	225	1	0	0	0	0	1	0	0	0	17205	1377	48	3	3745	3	USP47	11	11976665	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3995150	11976665	123029851	454	170403											
PDE3B	5140	broad.mit.edu	37	chr11	14696038	14696038	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcatgaagaagaggccCatgaaagcacagcactcact	9	10	2	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14696038	G	G	14696038	1	3	225	0	1	0	0	0	0	0	0	0	11732	609	21	4		4	PDE3B	11	14696038	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2719373	14696038	120310478	455	170404											
PDE3B	5140	broad.mit.edu	37	chr11	14810541	14810541	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgtttcttttttctctGtacatgttaaaaatatactt	3	5	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14810541	T	T	14810541	1	4	225	0	1	0	0	0	0	0	0	0	11732	1392	48	3		3	PDE3B	11	14810541	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	114503	14810541	120195975	456	170405											
CALCA	796	broad.mit.edu	37	chr11	14989403	14989403	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcttctgggcaatgattctGatttgcaggatggagaaaga	12	6	3	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14989403	A	A	14989403	1	1	225	0	1	0	0	0	0	0	0	0	2601	1305	45	4		4	CALCA	11	14989403	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	178862	14989403	120017113	457	170406											
TPH1	7166	broad.mit.edu	37	chr11	18047172	18047172	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgccaagagaagccaagcCaatttcttgggagaattggg	13	8	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18047172	A	A	18047172	3	1	225	1	0	0	0	0	1	0	0	0	16525	594	21	2	470	2	TPH1	11	18047172	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3057769	18047172	116959344	458	170407											
E2F8	79733	broad.mit.edu	37	chr11	19255840	19255840	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtttcctaatttggaaatGagtttacgactgagatttta	8	4	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19255840	C	C	19255840	1	2	225	0	1	0	0	0	0	0	0	0	4913	1305	45	4		4	E2F8	11	19255840	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1208668	19255840	115750676	459	170408											
DCDC1	341019	broad.mit.edu	37	chr11	31329334	31329334	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtttgatgtgtggagcaatCttgaagtcctgacccttctg	11	8	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31329334	G	G	31329334	3	3	225	1	0	0	0	0	1	0	0	0	4317	913	32	4	802	4	DCDC1	11	31329334	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	12073494	31329334	103677182	460	170409											
EHF	26298	broad.mit.edu	37	chr11	34668258	34668258	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctttctgtgtctctccCtaccctgctaggagccagct	7	16	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34668258	A	A	34668258	1	1	225	0	1	0	0	0	0	0	0	0	5021	696	24	2		2	EHF	11	34668258	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	3338924	34668258	100338258	461	170410											
AMBRA1	55626	broad.mit.edu	37	chr11	46455071	46455071	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgcagcctgaagacctGggccaccatgtgctctgtgg	13	12	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46455071	A	A	46455071	4	1	225	1	0	0	0	0	0	1	0	0	565	1357	47	4	987	4	AMBRA1	11	46455071	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	11786813	46455071	88551445	462	170411											
TRIM48	79097	broad.mit.edu	37	chr11	55038382	55038382	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctccttctcacttcctctCagacctatctttttctgtat	3	14	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55038382	A	A	55038382	1	1	225	0	1	0	0	0	0	0	0	0	16648	841	29	3		3	TRIM48	11	55038382	3'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	8583311	55038382	79968134	463	170412											
CTNND1	1500	broad.mit.edu	37	chr11	57564492	57564492	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaataggggaagagaaaagGgtctttccaagaccagggac	14	6	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57564492	T	T	57564492	1	4	225	0	1	0	0	0	0	0	0	0	4053	1247	43	2		2	CTNND1	11	57564492	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2526110	57564492	77442024	464	170413											
MS4A14	84689	broad.mit.edu	37	chr11	60152491	60152491	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatactctttatactttacCgtgtgcattcaaataatcac	3	9	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60152491	T	T	60152491	1	4	225	0	1	0	0	0	0	0	0	0	9952	667	23	4		4	MS4A14	11	60152491	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2587999	60152491	74854025	465	170414											
MS4A14	84689	broad.mit.edu	37	chr11	60184410	60184410	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataccaattctggcaattcCacaaaggcaatctccaggct	6	12	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60184410	A	A	60184410	3	1	225	1	0	0	0	0	1	0	0	0	9952	594	21	2	1987	2	MS4A14	11	60184410	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	31919	60184410	74822106	466	170415											
MS4A1	931	broad.mit.edu	37	chr11	60231728	60231728	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcctgtcttgcccacccCctctccatctcccccacctc	2	24	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60231728	T	T	60231728	1	4	225	0	1	0	0	0	0	0	0	0	9948	638	22	4		4	MS4A1	11	60231728	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	47318	60231728	74774788	467	170416											
INCENP	3619	broad.mit.edu	37	chr11	61912273	61912273	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcctgggaggaaaggcgGgagctgcgggccttggcttg	19	9	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61912273	T	T	61912273	1	4	225	0	1	0	0	0	0	0	0	0	7803	1247	43	2		2	INCENP	11	61912273	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1680545	61912273	73094243	468	170417											
INTS5	80789	broad.mit.edu	37	chr11	62416483	62416483	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcaatccacaagctctcCagagacagtgcccagcaaag	10	13	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62416483	A	A	62416483	4	1	225	1	0	0	0	0	0	1	0	0	7851	603	21	2	1994	2	INTS5	11	62416483	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	504210	62416483	72590033	469	170418											
ZBTB3	79842	broad.mit.edu	37	chr11	62519947	62519947	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acaggtaaagtggctcatgcAgggatgcgggtgcaggcaga	17	7	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62519947	T	T	62519947	3	4	225	1	0	0	0	0	1	0	0	0	17660	188	7	5	388	5	ZBTB3	11	62519947	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	103464	62519947	72486569	470	170419											
NXF1	10482	broad.mit.edu	37	chr11	62568674	62568674	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaagttcaaggacaatagCtgtgaggagagaagagttta	12	5	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62568674	A	A	62568674	5	1	225	1	0	0	0	0	0	0	1	0	10877	811	28	3	1168	3	NXF1	11	62568674	Splice_Site	SNP	C	TCGA-91-6828-01A-11D-1855-08	48727	62568674	72437842	471	170420											
NXF1	10482	broad.mit.edu	37	chr11	62571288	62571288	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactcggggaccatcctggGcatcactcattgccacatct	9	14	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62571288	A	A	62571288	3	1	225	1	0	0	0	0	1	0	0	0	10877	1203	42	4	1803	4	NXF1	11	62571288	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2614	62571288	72435228	472	170421											
SLC22A25	387601	broad.mit.edu	37	chr11	62948025	62948025	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctctttatggatttatcatCttttatcccccaaatatttt	2	9	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62948025	T	T	62948025	1	4	225	0	1	0	0	0	0	0	0	0	14568	928	32	4		4	SLC22A25	11	62948025	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	376737	62948025	72058491	473	170422											
CDC42BPG	55561	broad.mit.edu	37	chr11	64602820	64602820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgttgtaccctgctcaccCgctcctgctcccggctcagc	8	19	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64602820	A	A	64602820	3	1	225	1	0	0	0	0	1	0	0	0	3104	666	23	1	2791	1	CDC42BPG	11	64602820	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1654795	64602820	70403696	474	170423											
LTBP3	4054	broad.mit.edu	37	chr11	65319380	65319380	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcagatctgtggatcacGggtcaaggggtcaggcctag	16	8	5	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65319380	T	T	65319380	1	4	225	0	1	0	0	0	0	0	0	0	9162	1131	39	1		1	LTBP3	11	65319380	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	716560	65319380	69687136	475	170424											
SART1	9092	broad.mit.edu	37	chr11	65743992	65743992	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgcaccttgggggagatcCccacctacgggctggctggc	15	15	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65743992	G	G	65743992	3	3	225	1	0	0	0	0	1	0	0	0	13958	623	22	4	1749	4	SART1	11	65743992	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	424612	65743992	69262524	476	170425											
CCS	9973	broad.mit.edu	37	chr11	66372806	66372806	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacacacactggatctcattCcagcaccgcggagacctggg	10	14	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66372806	T	T	66372806	1	4	225	0	1	0	0	0	0	0	0	0	2982	870	30	4		4	CCS	11	66372806	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	628814	66372806	68633710	477	170426											
SHANK2	22941	broad.mit.edu	37	chr11	70507767	70507767	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgcaggaccaccgtcttctCctcaataatgcagtcactgt	7	14	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70507767	G	G	70507767	3	3	225	1	0	0	0	0	1	0	0	0	14378	864	30	4	3723	4	SHANK2	11	70507767	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	4134961	70507767	64498749	478	170427											
RNF121	55298	broad.mit.edu	37	chr11	71698255	71698255	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttattaacaggagggacGtaatatccaggataggagac	13	5	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71698255	T	T	71698255	1	4	225	0	1	0	0	0	0	0	0	0	13542	1160	40	3		3	RNF121	11	71698255	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1190488	71698255	63308261	479	170428											
ARAP1	116985	broad.mit.edu	37	chr11	72422487	72422487	+	Frame_Shift_Del	DEL	A	-	-													ggcctcaccttgttactgtcAaagtatcgcaggtgatcagt							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	72422487	-	-	72422487	7	5	225	1	0	1	0	1	0	0	0	0	840	127	5	0	3384	0	ARAP1	11	72422487	Frame_Shift_Del	DEL	A	TCGA-91-6828-01A-11D-1855-08	724232	72422487	62584029	480	170429											
LRRC32	2615	broad.mit.edu	37	chr11	76371671	76371671	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agctcaatctcattgtagctCaaatccagattcaagagctg	7	10	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76371671	G	G	76371671	3	3	225	1	0	0	0	0	1	0	0	0	9074	825	29	4	1026	4	LRRC32	11	76371671	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3949184	76371671	58634845	481	170430											
INTS4	92105	broad.mit.edu	37	chr11	77635773	77635773	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acattatgggactcagtgagTaaatgggcaaaaaagtcatt	10	5	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77635773	A	A	77635773	1	1	225	0	1	0	0	0	0	0	0	0	7850	1653	57	5		5	INTS4	11	77635773	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1264102	77635773	57370743	482	170431											
FAT3	120114	broad.mit.edu	37	chr11	92100105	92100105	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcctcgccatgctttgCagcagtttctgctttattga	10	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92100105	A	A	92100105	1	1	225	0	1	0	0	0	0	0	0	0	5748	725	25	3		3	FAT3	11	92100105	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	14464332	92100105	42906411	483	170432											
BTG4	54766	broad.mit.edu	37	chr11	111369271	111369271	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agatcactccattttcctagGagctggctggttgcttggtg	12	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111369271	T	T	111369271	1	4	225	0	1	0	0	0	0	0	0	0	1566	1189	41	3		3	BTG4	11	111369271	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	19269166	111369271	23637245	484	170433											
BCO2	83875	broad.mit.edu	37	chr11	112085632	112085632	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcatttagtgggggattctCtgatcaaggttgatgtggtg	16	4	2	2	rs140943596		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112085632	A	A	112085632	3	1	225	1	0	0	0	0	1	0	0	0	1390	912	32	3	1518	3	BCO2	11	112085632	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	716361	112085632	22920884	485	170434											
NCAM1	4684	broad.mit.edu	37	chr11	113076939	113076939	+	Intron	DEL	T	-	-													cttcctgatctctgcattgcTacaaccttggttctccaaaa							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	113076939	-	-	113076939	6	5	225	0	1	1	0	1	0	0	0	0	10297	1537	53	0		0	NCAM1	11	113076939	Intron	DEL	T	TCGA-91-6828-01A-11D-1855-08	991307	113076939	21929577	486	170435											
DRD2	1813	broad.mit.edu	37	chr11	113283211	113283211	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gatcctgcagccatggttagGaaggacatggcagggaatgg	16	7	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113283211	A	A	113283211	1	1	225	0	1	0	0	0	0	0	0	0	4797	1189	41	4		4	DRD2	11	113283211	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	206272	113283211	21723305	487	170436											
CADM1	23705	broad.mit.edu	37	chr11	115049441	115049441	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaccgccacgacgccaCcgatcacggcatgatccact	7	20	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115049441	A	A	115049441	3	1	225	1	0	0	0	0	1	0	0	0	2592	507	18	3	203	3	CADM1	11	115049441	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1766230	115049441	19957075	488	170437											
MLL	4297	broad.mit.edu	37	chr11	118380757	118380758	+	Frame_Shift_Ins	INS	-	A	A													ggaaggaaagcattactgagINSaaaaaacccaagaaaggact							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118380758	A	A	118380757	7	5	225	1	0	1	1	0	0	0	0	0	9713	933	33	0	11104	0	MLL	11	118380757	Frame_Shift_Ins	INS	-	TCGA-91-6828-01A-11D-1855-08	3331316	118380757	16625759	489	170438											
IFT46	56912	broad.mit.edu	37	chr11	118428594	118428594	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagcctgtggcatgccCtcccttaggacctgaaggat	12	13	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118428594	A	A	118428594	1	1	225	0	1	0	0	0	0	0	0	0	7630	680	24	2		2	IFT46	11	118428594	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	47837	118428594	16577922	490	170439											
ZNF202	7753	broad.mit.edu	37	chr11	123597329	123597329	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgaaccttttggtgcctGgcaagatgtgagcttcgtgt	13	7	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123597329	A	A	123597329	2	1	225	1	0	0	0	0	0	0	0	1	17889	1335	47	4		4	ZNF202	11	123597329	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	5168735	123597329	11409187	491	170440											
TMEM225	338661	broad.mit.edu	37	chr11	123755943	123755943	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgtctctttctagagtacAgttctgaccttctggccaaa	7	13	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123755943	T	T	123755943	1	4	225	0	1	0	0	0	0	0	0	0	16270	203	7	5		5	TMEM225	11	123755943	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	158614	123755943	11250573	492	170441											
ROBO3	64221	broad.mit.edu	37	chr11	124740965	124740965	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggcagctcctggagagagCgtggctttccagtgcgagac	15	10	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124740965	A	A	124740965	3	1	225	1	0	0	0	0	1	0	0	0	13626	767	27	3	1115	3	ROBO3	11	124740965	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	985022	124740965	10265551	493	170442											
DCPS	28960	broad.mit.edu	37	chr11	126215396	126215396	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccacctgctggctgaggTgatcgagaacttggagtgtg	16	9	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	126215396	C	C	126215396	3	2	225	1	0	0	0	0	1	0	0	0	4334	1696	59	5	924	5	DCPS	11	126215396	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1474431	126215396	8791120	494	170443											
PRDM10	56980	broad.mit.edu	37	chr11	129784679	129784679	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcgacacagggatgtactGaattctctggtaatcccctt	9	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129784679	T	T	129784679	3	4	225	1	0	0	0	0	1	0	0	0	12557	1299	45	3	729	3	PRDM10	11	129784679	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3569283	129784679	5221837	495	170444											
IGSF9B	22997	broad.mit.edu	37	chr11	133801914	133801914	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agagcccagaggtggcatcaCagtactggggggagccctca	15	11	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	133801914	G	G	133801914	1	3	225	0	1	0	0	0	0	0	0	0	7676	493	17	4		4	IGSF9B	11	133801914	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	4017235	133801914	1204602	496	170445											
ACAD8	27034	broad.mit.edu	37	chr11	134131719	134131719	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcagtggctctgcaggagGagaggaaggatgcagtggcc	18	8	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134131719	T	T	134131719	4	4	225	1	0	0	0	0	0	1	0	0	110	1175	41	3	1061	3	ACAD8	11	134131719	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	329805	134131719	874797	497	170446											
WNK1	65125	broad.mit.edu	37	chr12	999728	999728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaattccagccctacccGtagttgattcaggaggttta	8	10	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	999728	T	T	999728	1	4	225	0	1	0	0	0	0	0	0	0	17504	1160	40	3		3	WNK1	12	999728	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08		999728	132852167	498	170447											
KCNA1	3736	broad.mit.edu	37	chr12	5021551	5021551	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctttttcctcttcatcgGggtcatcctgttttctagtg	7	11	5	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5021551	T	T	5021551	3	4	225	1	0	0	0	0	1	0	0	0	8071	1232	43	2	1009	2	KCNA1	12	5021551	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	4021823	5021551	128830344	499	170448											
NCAPD2	9918	broad.mit.edu	37	chr12	6623502	6623502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagaaccgccccactcGggaagccataacacacctgc	8	17	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6623502	T	T	6623502	3	4	225	1	0	0	0	0	1	0	0	0	10300	1116	39	1	681	1	NCAPD2	12	6623502	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1601951	6623502	127228393	500	170449											
SPSB2	84727	broad.mit.edu	37	chr12	6981812	6981812	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaggcgtgcaggccccttGaatagcccctcttaccccgg	10	18	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6981812	T	T	6981812	4	4	225	1	0	0	0	0	0	1	0	0	15231	1294	45	3	545	3	SPSB2	12	6981812	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	358310	6981812	126870083	501	170450											
A2M	2	broad.mit.edu	37	chr12	9231857	9231857	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taccaggtgttgccctggttCctgccatatcgctccccaaa	8	15	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9231857	A	A	9231857	3	1	225	1	0	0	0	0	1	0	0	0	4	854	30	3	1370	3	A2M	12	9231857	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2250045	9231857	124620038	502	170451											
KLRD1	3824	broad.mit.edu	37	chr12	10467407	10467407	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttaaatgtttcttggggcAgagaaggtggagagtaaaga	14	2	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10467407	T	T	10467407	1	4	225	0	1	0	0	0	0	0	0	0	8490	203	7	5		5	KLRD1	12	10467407	3'UTR	SNP	A	TCGA-91-6828-01A-11D-1855-08	1235550	10467407	123384488	503	170452											
PRB1	5542	broad.mit.edu	37	chr12	11507028	11507028	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttatcagcttgggtaacAagctgagtggggaaatacac	11	6	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11507028	G	G	11507028	1	3	225	0	1	0	0	0	0	0	0	0	12548	145	5	5		5	PRB1	12	11507028	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	1039621	11507028	122344867	504	170453											
EPS8	2059	broad.mit.edu	37	chr12	15793840	15793840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagccattctacgaaagaaGttccctagacttcaacaaag	6	10	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15793840	T	T	15793840	1	4	225	0	1	0	0	0	0	0	0	0	5236	1044	36	3		3	EPS8	12	15793840	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	4286812	15793840	118058055	505	170454											
PLCZ1	89869	broad.mit.edu	37	chr12	18889139	18889139	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggataggataggcaggggGtggatgtcatcttaccttaa	14	5	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18889139	A	A	18889139	1	1	225	0	1	0	0	0	0	0	0	0	12139	1276	44	4		4	PLCZ1	12	18889139	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	3095299	18889139	114962756	506	170455											
SLCO1A2	6579	broad.mit.edu	37	chr12	21471751	21471751	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cattaatgaatccaactagaGatgttgggatgttgaattgt	10	4	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21471751	C	C	21471751	3	2	225	1	0	0	0	0	1	0	0	0	14836	942	33	4	1897	4	SLCO1A2	12	21471751	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2582612	21471751	112380144	507	170456											
ABCC9	10060	broad.mit.edu	37	chr12	22068791	22068791	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaatctcactcccagatcCtggaggtcttcaggaggctt	10	11	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22068791	G	G	22068791	3	3	225	1	0	0	0	0	1	0	0	0	59	680	24	4	4300	4	ABCC9	12	22068791	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	597040	22068791	111783104	508	170457											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25398284	A	A	25398284	3	1	225	1	0	0	0	0	1	0	0	0	8509	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3329493	25398284	108453611	509	170458											
ITPR2	3709	broad.mit.edu	37	chr12	26835477	26835477	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tattctcatggcatttggctGaaaattaaaccatcttcagt	6	8	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26835477	A	A	26835477	1	1	225	0	1	0	0	0	0	0	0	0	7991	1305	45	4		4	ITPR2	12	26835477	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1437193	26835477	107016418	510	170459											
ITPR2	3709	broad.mit.edu	37	chr12	26839489	26839489	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaatgtcattgccatgcGggactgaaaccaaagtatac	9	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26839489	T	T	26839489	3	4	225	1	0	0	0	0	1	0	0	0	7991	1116	39	1	7220	1	ITPR2	12	26839489	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	4012	26839489	107012406	511	170460											
PPFIBP1	8496	broad.mit.edu	37	chr12	27829381	27829381	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagagctccggcagaaagCaggccatttgggacccttcc	12	13	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27829381	A	A	27829381	3	1	225	1	0	0	0	0	1	0	0	0	12409	709	25	3	1535	3	PPFIBP1	12	27829381	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	989892	27829381	106022514	512	170461											
PDZRN4	29951	broad.mit.edu	37	chr12	41582588	41582588	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgacttcggccctgcccgcCggctccgcagccgcgggggc	16	19	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41582588	A	A	41582588	1	1	225	0	1	0	0	0	0	0	0	0	11804	643	23	1		1	PDZRN4	12	41582588	5'Flank	SNP	C	TCGA-91-6828-01A-11D-1855-08	13753207	41582588	92269307	513	170462											
ANO6	196527	broad.mit.edu	37	chr12	45781954	45781954	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctgttagttaccttgttTttggagttttggaagcgacg	11	6	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45781954	A	A	45781954	3	1	225	1	0	0	0	0	1	0	0	0	701	1838	64	5	1238	5	ANO6	12	45781954	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	4199366	45781954	88069941	514	170463											
FMNL3	91010	broad.mit.edu	37	chr12	50050829	50050829	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttttgcagatgaggcagaaGaagtagagcacctatggcta	13	6	0	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50050829	T	T	50050829	1	4	225	0	1	0	0	0	0	0	0	0	6011	957	33	3		3	FMNL3	12	50050829	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	4268875	50050829	83801066	515	170464											
KRT6B	3854	broad.mit.edu	37	chr12	52843583	52843583	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagttgatctcatctgtaaGagtgtctgccttggcttgca	11	8	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52843583	C	C	52843583	3	2	225	1	0	0	0	0	1	0	0	0	8552	942	33	4	847	4	KRT6B	12	52843583	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2792754	52843583	81008312	516	170465											
ZNF740	283337	broad.mit.edu	37	chr12	53579083	53579083	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cggggcaggtggtttactctCatttatgaattttgtctgag	12	6	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53579083	A	A	53579083	1	1	225	0	1	0	0	0	0	0	0	0	18257	841	29	3		3	ZNF740	12	53579083	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	735500	53579083	80272812	517	170466											
ESPL1	9700	broad.mit.edu	37	chr12	53673324	53673324	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaactcagaaaatcctggCtattgatgatgaatggcatc	9	7	1	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53673324	G	G	53673324	1	3	225	0	1	0	0	0	0	0	0	0	5295	812	28	4		4	ESPL1	12	53673324	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	94241	53673324	80178571	518	170467											
TARBP2	6895	broad.mit.edu	37	chr12	53899014	53899014	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tggatgcccgggatggcaatGaggtggagcctgatgatgac	17	7	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53899014	A	A	53899014	3	1	225	1	0	0	0	0	1	0	0	0	15675	1291	45	4	735	4	TARBP2	12	53899014	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	225690	53899014	79952881	519	170468											
CALCOCO1	57658	broad.mit.edu	37	chr12	54115229	54115229	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagggagaggaagtgacGgggtcagtggactcccctca	17	8	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54115229	T	T	54115229	1	4	225	0	1	0	0	0	0	0	0	0	2603	1131	39	1		1	CALCOCO1	12	54115229	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	216215	54115229	79736666	520	170469											
ARHGAP9	64333	broad.mit.edu	37	chr12	57867885	57867885	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggctggggcagctcccGgagaaaaagcttcagggctc	15	11	1	2	rs61758883	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57867885	T	T	57867885	2	4	225	1	0	0	0	0	0	0	0	1	891	1115	39	1		1	ARHGAP9	12	57867885	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	3752656	57867885	75984010	521	170470											
KIF5A	3798	broad.mit.edu	37	chr12	57972080	57972080	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaaagcagaagatttcCtttcttgagaacaacctgga	7	10	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57972080	A	A	57972080	2	1	225	1	0	0	0	0	0	0	0	1	8375	668	24	2		2	KIF5A	12	57972080	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	104195	57972080	75879815	522	170471											
B4GALNT1	2583	broad.mit.edu	37	chr12	58021691	58021691	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggcctgggataggggacccGaaggggtcaaggtctgcgct	19	9	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58021691	C	C	58021691	1	2	225	0	1	0	0	0	0	0	0	0	1271	1073	37	4		4	B4GALNT1	12	58021691	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	49611	58021691	75830204	523	170472											
LEMD3	23592	broad.mit.edu	37	chr12	65609842	65609842	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtaattgttttaacttttAtagttgctaaaaatgttttg	7	2	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65609842	G	G	65609842	1	3	225	0	1	0	0	0	0	0	0	0	8793	464	16	5		5	LEMD3	12	65609842	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	7588151	65609842	68242053	524	170473											
PTPRR	5801	broad.mit.edu	37	chr12	71065963	71065963	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agccttgggtgcccagttgcCagtcctaccatggttggaag	13	11	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71065963	T	T	71065963	1	4	225	0	1	0	0	0	0	0	0	0	12918	609	21	4		4	PTPRR	12	71065963	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5456121	71065963	62785932	525	170474											
KCNC2	3747	broad.mit.edu	37	chr12	75444758	75444758	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccctgaggaagccaagcaCatctttagcagctttggatg	10	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75444758	A	A	75444758	3	1	225	1	0	0	0	0	1	0	0	0	8085	478	17	3	967	3	KCNC2	12	75444758	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	4378795	75444758	58407137	526	170475											
TMTC2	160335	broad.mit.edu	37	chr12	83289747	83289747	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcggacagcctcctcaccCgcactctcaccttcttctac	4	19	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83289747	A	A	83289747	3	1	225	1	0	0	0	0	1	0	0	0	16384	652	23	1	815	1	TMTC2	12	83289747	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	7844989	83289747	50562148	527	170476											
APAF1	317	broad.mit.edu	37	chr12	99097244	99097244	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccccacaaaaccatttGgcagtggttgctttgtccca	7	13	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99097244	T	T	99097244	3	4	225	1	0	0	0	0	1	0	0	0	757	1339	47	2	2628	2	APAF1	12	99097244	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	15807497	99097244	34754651	528	170477											
POLR3B	55703	broad.mit.edu	37	chr12	106763072	106763072	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatcttaatatctatgttGggcttcctgatgttgaagaa	9	5	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106763072	T	T	106763072	3	4	225	1	0	0	0	0	1	0	0	0	12324	1348	47	2	265	2	POLR3B	12	106763072	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	7665828	106763072	27088823	529	170478											
MYO1H	283446	broad.mit.edu	37	chr12	109845649	109845649	+	Frame_Shift_Del	DEL	G	-	-													gtctacgctagagatgcaatGgcaaaggctgtttatggacg							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109845649	-	-	109845649	7	5	225	1	0	1	0	1	0	0	0	0	10169	1348	47	0	1072	0	MYO1H	12	109845649	Frame_Shift_Del	DEL	G	TCGA-91-6828-01A-11D-1855-08	3082577	109845649	24006246	530	170479											
UBE3B	89910	broad.mit.edu	37	chr12	109964250	109964250	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaattaggtttttaaggtCaccacttgaaaagacttcat	7	7	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109964250	T	T	109964250	1	4	225	0	1	0	0	0	0	0	0	0	17006	841	29	4		4	UBE3B	12	109964250	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	118601	109964250	23887645	531	170480											
MMAB	326625	broad.mit.edu	37	chr12	109998814	109998814	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcctctccctctccctTgggccctctccctctctcca	4	21	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109998814	C	C	109998814	1	2	225	0	1	0	0	0	0	0	0	0	9733	1827	63	5		5	MMAB	12	109998814	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	34564	109998814	23853081	532	170481											
CCDC63	160762	broad.mit.edu	37	chr12	111296694	111296694	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgtatcacagtatctcctCtggacagcccgctaaatgtg	8	13	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	111296694	G	G	111296694	1	3	225	0	1	0	0	0	0	0	0	0	2862	928	32	4		4	CCDC63	12	111296694	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1297880	111296694	22555201	533	170482											
TBX5	6910	broad.mit.edu	37	chr12	114793673	114793673	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgacggtgcagctgctGtaggaaggcatgcttggcca	17	8	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114793673	T	T	114793673	4	4	225	1	0	0	0	0	0	1	0	0	15783	1372	48	3	339	3	TBX5	12	114793673	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3496979	114793673	19058222	534	170483											
TESC	54997	broad.mit.edu	37	chr12	117486969	117486969	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccttgcgcaggttcctacgGgagcaacaaggagggtgttg	15	10	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117486969	C	C	117486969	1	2	225	0	1	0	0	0	0	0	0	0	15888	1247	43	4		4	TESC	12	117486969	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2693296	117486969	16364926	535	170484											
GCN1L1	10985	broad.mit.edu	37	chr12	120567338	120567338	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caggcttttggataggcatgTcatctattccttgaagcagc	10	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120567338	A	A	120567338	1	1	225	0	1	0	0	0	0	0	0	0	6361	1682	58	5		5	GCN1L1	12	120567338	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	3080369	120567338	13284557	536	170485											
ORAI1	84876	broad.mit.edu	37	chr12	122079355	122079355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggccaggcagctgccatcGcctcgaccaccatcatggtg	12	16	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122079355	A	A	122079355	3	1	225	1	0	0	0	0	1	0	0	0	11351	1087	38	4	724	4	ORAI1	12	122079355	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1512017	122079355	11772540	537	170486											
IL31	386653	broad.mit.edu	37	chr12	122657105	122657105	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtttgtttctggtgcatcttGaaatatgagtttgtcgaggt	12	4	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122657105	A	A	122657105	4	1	225	1	0	0	0	0	0	1	0	0	7760	1299	45	4	149	4	IL31	12	122657105	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	577750	122657105	11194790	538	170487											
CLIP1	6249	broad.mit.edu	37	chr12	122763323	122763323	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtacagagaagcactgGgcaggcgccctttacctgag	15	10	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122763323	A	A	122763323	1	1	225	0	1	0	0	0	0	0	0	0	3564	1247	43	4		4	CLIP1	12	122763323	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	106218	122763323	11088572	539	170488											
ABCB9	23457	broad.mit.edu	37	chr12	123419912	123419912	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgaaaggcacagtgggcaGgccgtaggagatgttatccg	15	9	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123419912	A	A	123419912	2	1	225	1	0	0	0	0	0	0	0	1	48	991	35	4		4	ABCB9	12	123419912	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	656589	123419912	10431983	540	170489											
GTF2H3	2967	broad.mit.edu	37	chr12	124132464	124132464	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgatcatgagtgagcctgGgcggtgaggcctggtgtaac	16	8	2	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124132464	T	T	124132464	1	4	225	0	1	0	0	0	0	0	0	0	6929	1247	43	2		2	GTF2H3	12	124132464	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	712552	124132464	9719431	541	170490											
CHFR	55743	broad.mit.edu	37	chr12	133438086	133438086	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttcttcacgggctccaaatCctcctgatcctggggttcca	8	15	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133438086	A	A	133438086	3	1	225	1	0	0	0	0	1	0	0	0	3368	855	30	3	1288	3	CHFR	12	133438086	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	9305622	133438086	413809	542	170491											
TUBA3C	7278	broad.mit.edu	37	chr13	19751729	19751729	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgaggaagccctgcaGtcccgtgcacagatccgcct	12	13	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19751729	T	T	19751729	3	4	225	1	0	0	0	0	1	0	0	0	16872	1020	36	3	966	3	TUBA3C	13	19751729	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08		19751729	95418149	543	170492											
SHISA2	387914	broad.mit.edu	37	chr13	26620766	26620766	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtggcacagctgtcatgGgcacagagtcgtgctgcacc	14	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26620766	A	A	26620766	3	1	225	1	0	0	0	0	1	0	0	0	14393	1232	43	4	118	4	SHISA2	13	26620766	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	6869037	26620766	88549112	544	170493											
POSTN	10631	broad.mit.edu	37	chr13	38148759	38148759	+	Frame_Shift_Del	DEL	G	-	-													cttcaatcactttaatttttGgttccacaactttggttata							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	38148759	-	-	38148759	7	5	225	1	0	1	0	1	0	0	0	0	12354	1348	47	0	499	0	POSTN	13	38148759	Frame_Shift_Del	DEL	G	TCGA-91-6828-01A-11D-1855-08	11527993	38148759	77021119	545	170494											
POSTN	10631	broad.mit.edu	37	chr13	38166353	38166353	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaactaaataggatacaTttttacataaatttgacaaa	5	4	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38166353	A	A	38166353	1	1	225	0	1	0	0	0	0	0	0	0	12354	1508	52	5		5	POSTN	13	38166353	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	17594	38166353	77003525	546	170495											
TRPC4	7223	broad.mit.edu	37	chr13	38320115	38320115	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccaattttagtcttgcaaGatcatttccactttgttctt	6	9	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38320115	T	T	38320115	3	4	225	1	0	0	0	0	1	0	0	0	16705	942	33	3	2128	3	TRPC4	13	38320115	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	153762	38320115	76849763	547	170496											
RB1	5925	broad.mit.edu	37	chr13	48947605	48947606	+	Missense_Mutation	DNP	GA	TT	TT													cagcaagtgatcaaccttcaGaaaatctgatttcctatttt							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	48947606	TT	TT	48947605	3	4	225	1	0	0	0	0	1	0	0	0	13206	943	33	3	1238	3	RB1	13	48947605	Missense_Mutation	DNP	GA	TCGA-91-6828-01A-11D-1855-08	10627490	48947605	66222273	548	170497											
UTP14C	9724	broad.mit.edu	37	chr13	52598305	52598305	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagattcactgtatcctcacTtcacactgctgggccaaagt	7	12	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52598305	G	G	52598305	1	3	225	0	1	0	0	0	0	0	0	0	17223	1609	56	5		5	UTP14C	13	52598305	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	3650700	52598305	62571573	549	170498											
KLHL1	57626	broad.mit.edu	37	chr13	70456453	70456453	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcttataaaggcaagaaGcatgctcaggtcattgcatc	9	9	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70456453	A	A	70456453	3	1	225	1	0	0	0	0	1	0	0	0	8436	971	34	4	1085	4	KLHL1	13	70456453	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	17858148	70456453	44713425	550	170499											
SCEL	8796	broad.mit.edu	37	chr13	78130561	78130561	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatctttggtgatggggtGtgggatctgttctttcttgc	14	5	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78130561	T	T	78130561	1	4	225	0	1	0	0	0	0	0	0	0	14000	1392	48	3		3	SCEL	13	78130561	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	7674108	78130561	37039317	551	170500											
DZIP1	22873	broad.mit.edu	37	chr13	96241397	96241397	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaccctcccatccctgTcaatactcacgtaatagttg	5	13	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96241397	G	G	96241397	1	3	225	0	1	0	0	0	0	0	0	0	4903	1682	58	5		5	DZIP1	13	96241397	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	18110836	96241397	18928481	552	170501											
UGGT2	55757	broad.mit.edu	37	chr13	96601613	96601613	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatgaaaattgcgccttatGgaaggtacacttccaggaaa	9	7	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96601613	A	A	96601613	2	1	225	1	0	0	0	0	0	0	0	1	17068	1335	47	4		4	UGGT2	13	96601613	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	360216	96601613	18568265	553	170502											
MYO16	23026	broad.mit.edu	37	chr13	109699269	109699269	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttttattctaggtaatGtatgatgttgttggggcgat	11	3	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109699269	A	A	109699269	3	1	225	1	0	0	0	0	1	0	0	0	10158	1377	48	4	2826	4	MYO16	13	109699269	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	13097656	109699269	5470609	554	170503											
COL4A1	1282	broad.mit.edu	37	chr13	110813626	110813626	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggacagccagtacgagtagTcatttcgtgatgcaaagttg	12	7	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110813626	A	A	110813626	3	1	225	1	0	0	0	0	1	0	0	0	3721	1667	58	5	472	5	COL4A1	13	110813626	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1114357	110813626	4356252	555	170504											
COL4A1	1282	broad.mit.edu	37	chr13	110864792	110864792	+	Frame_Shift_Del	DEL	G	-	-													cattgcatcctggaatacctGgggggcctggcgggccgtct							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110864792	-	-	110864792	7	5	225	1	0	1	0	1	0	0	0	0	3721	1348	47	0	4838	0	COL4A1	13	110864792	Frame_Shift_Del	DEL	G	TCGA-91-6828-01A-11D-1855-08	51166	110864792	4305086	556	170505											
RASA3	22821	broad.mit.edu	37	chr13	114766432	114766432	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagagcacacagggccGgggtccgggcctcagctgcc	16	13	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114766432	T	T	114766432	1	4	225	0	1	0	0	0	0	0	0	0	13170	1131	39	1		1	RASA3	13	114766432	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	3901640	114766432	403446	557	170506											
OR11H12	440153	broad.mit.edu	37	chr14	19378063	19378063	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgactgggcatctctgtgCcaaactggtcatactgtgct	10	11	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19378063	A	A	19378063	3	1	225	1	0	0	0	0	1	0	0	0	11021	739	26	3	472	3	OR11H12	14	19378063	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08		19378063	87971477	558	170507											
POTEG	404785	broad.mit.edu	37	chr14	19571471	19571471	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacgttttttttgttttttTttttttgctttaataatatt	3	2	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19571471	C	C	19571471	1	2	225	0	1	0	0	0	0	0	0	0	12362	1856	64	5		5	POTEG	14	19571471	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	193408	19571471	87778069	559	170508											
RNASE13	440163	broad.mit.edu	37	chr14	21502073	21502073	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttggttagggtgctattGtagtagcagctagtgggtgg	18	3	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21502073	T	T	21502073	4	4	225	1	0	0	0	0	0	1	0	0	13514	1372	48	3	99	3	RNASE13	14	21502073	Nonsense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1930602	21502073	85847467	560	170509											
RPGRIP1	57096	broad.mit.edu	37	chr14	21795901	21795901	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccagaagctcagactaagGggaaggataccaaggacagt	12	8	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21795901	T	T	21795901	3	4	225	1	0	0	0	0	1	0	0	0	13660	1232	43	2	2896	2	RPGRIP1	14	21795901	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	293828	21795901	85553639	561	170510											
PRMT5	10419	broad.mit.edu	37	chr14	23391799	23391799	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataattatgtgggtgacaagGggccagaagctctagacaac	12	7	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23391799	T	T	23391799	1	4	225	0	1	0	0	0	0	0	0	0	12645	1247	43	2		2	PRMT5	14	23391799	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1595898	23391799	83957741	562	170511											
IPO4	79711	broad.mit.edu	37	chr14	24655522	24655522	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgcttgggagtctcccCcatcagctcaatctccaact	7	14	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24655522	A	A	24655522	3	1	225	1	0	0	0	0	1	0	0	0	7865	623	22	2	2353	2	IPO4	14	24655522	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1263723	24655522	82694018	563	170512											
AKAP6	9472	broad.mit.edu	37	chr14	33292102	33292102	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taacagaacttagcagcagtGacgagctctctctttgctca	8	11	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33292102	A	A	33292102	3	1	225	1	0	0	0	0	1	0	0	0	455	1290	45	4	5129	4	AKAP6	14	33292102	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	8636580	33292102	74057438	564	170513											
PPP2R3C	55012	broad.mit.edu	37	chr14	35554835	35554835	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagagttttcactgtcattTgcaacaagagcctctctgtt	8	10	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35554835	G	G	35554835	2	3	225	1	0	0	0	0	0	0	0	1	12491	1799	63	5		5	PPP2R3C	14	35554835	Silent	SNP	T	TCGA-91-6828-01A-11D-1855-08	2262733	35554835	71794705	565	170514											
CTAGE5	4253	broad.mit.edu	37	chr14	39782639	39782639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccactgaagagctggagaCctataggtattaaatacatt	9	7	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39782639	A	A	39782639	3	1	225	1	0	0	0	0	1	0	0	0	4028	507	18	3	1374	3	CTAGE5	14	39782639	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	4227804	39782639	67566901	566	170515											
MDGA2	161357	broad.mit.edu	37	chr14	47351411	47351411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taatctcctgctcccaccagCgctgctgtccagcctgaaat	7	16	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47351411	A	A	47351411	3	1	225	1	0	0	0	0	1	0	0	0	9500	768	27	3	853	3	MDGA2	14	47351411	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	7568772	47351411	59998129	567	170516											
MDGA2	161357	broad.mit.edu	37	chr14	47669838	47669838	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcaattttcttctccacGttcttctcggcctgtttccg	6	13	5	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47669838	A	A	47669838	1	1	225	0	1	0	0	0	0	0	0	0	9500	1160	40	4		4	MDGA2	14	47669838	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	318427	47669838	59679702	568	170517											
ATL1	51062	broad.mit.edu	37	chr14	51058328	51058328	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagattcagccacagtatttGcccttagcacaatgatcagc	8	11	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51058328	A	A	51058328	3	1	225	1	0	0	0	0	1	0	0	0	1110	1319	46	4	507	4	ATL1	14	51058328	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3388490	51058328	56291212	569	170518											
SAMD4A	23034	broad.mit.edu	37	chr14	55231189	55231189	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgtgcacacagctcttGgtctccagacctgatgagga	11	11	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55231189	T	T	55231189	3	4	225	1	0	0	0	0	1	0	0	0	13932	1339	47	2	1550	2	SAMD4A	14	55231189	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	4172861	55231189	52118351	570	170519											
MTHFD1	4522	broad.mit.edu	37	chr14	64855014	64855014	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggggagaagcgggcagGggcgcaggcgcagtagtgtg	23	7	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64855014	T	T	64855014	1	4	225	0	1	0	0	0	0	0	0	0	10021	1247	43	2		2	MTHFD1	14	64855014	5'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	9623825	64855014	42494526	571	170520											
FUT8	2530	broad.mit.edu	37	chr14	66209192	66209192	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagttcaaaccatttcaGccaaactgtagatgaagagg	8	9	3	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66209192	T	T	66209192	1	4	225	0	1	0	0	0	0	0	0	0	6170	986	34	3		3	FUT8	14	66209192	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	1354178	66209192	41140348	572	170521											
ESRRB	2103	broad.mit.edu	37	chr14	76965136	76965136	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgccctctcccctccaccGagccaccaagaggcagcatg	9	18	1	1	rs141650196	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76965136	A	A	76965136	1	1	225	0	1	0	0	0	0	0	0	0	5303	1073	37	4		4	ESRRB	14	76965136	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	10755944	76965136	30384404	573	170522											
ADCK1	57143	broad.mit.edu	37	chr14	78288879	78288879	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtaagtaacccatgggaCccatctgagccaggccagga	12	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78288879	T	T	78288879	1	4	225	0	1	0	0	0	0	0	0	0	288	522	18	4		4	ADCK1	14	78288879	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1323743	78288879	29060661	574	170523											
TSHR	7253	broad.mit.edu	37	chr14	81448604	81448604	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actggagatttcagtcccgaGgctgggaatgagtccaccag	13	10	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81448604	A	A	81448604	1	1	225	0	1	0	0	0	0	0	0	0	16747	1015	35	4		4	TSHR	14	81448604	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	3159725	81448604	25900936	575	170524											
TSHR	7253	broad.mit.edu	37	chr14	81499003	81499003	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacaggaagatagagagttgTcgaaggcataatctctcctg	11	7	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81499003	A	A	81499003	1	1	225	0	1	0	0	0	0	0	0	0	16747	1682	58	5		5	TSHR	14	81499003	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	50399	81499003	25850537	576	170525											
ZC3H14	79882	broad.mit.edu	37	chr14	89074585	89074585	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaataccatccccatctcaCcctgcaagtgaataccatcc	4	16	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89074585	T	T	89074585	1	4	225	0	1	0	0	0	0	0	0	0	17692	522	18	4		4	ZC3H14	14	89074585	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	7575582	89074585	18274955	577	170526											
SLC24A4	123041	broad.mit.edu	37	chr14	92952923	92952923	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaaaataactgtttcctaCgcttacagtgtctctaatac	4	10	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92952923	T	T	92952923	1	4	225	0	1	0	0	0	0	0	0	0	14582	551	19	4		4	SLC24A4	14	92952923	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	3878338	92952923	14396617	578	170527											
LGMN	5641	broad.mit.edu	37	chr14	93199091	93199091	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctataggaacggcaccaatgCccagggccacactgaggaat	11	12	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93199091	A	A	93199091	3	1	225	1	0	0	0	0	1	0	0	0	8827	739	26	3	1312	3	LGMN	14	93199091	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	246168	93199091	14150449	579	170528											
ITPK1	3705	broad.mit.edu	37	chr14	93482981	93482981	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agggcctcccctcctcctccTgaaaatgccacagccaaggg	9	17	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93482981	A	A	93482981	1	1	225	0	1	0	0	0	0	0	0	0	7986	1595	55	5		5	ITPK1	14	93482981	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	283890	93482981	13866559	580	170529											
KIAA1409	57578	broad.mit.edu	37	chr14	94048570	94048570	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agcccacagacagcctggagGatagcctcctttcttccaga	9	14	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94048570	C	C	94048570	3	2	225	1	0	0	0	0	1	0	0	0	8300	1174	41	4	2218	4	KIAA1409	14	94048570	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	565589	94048570	13300970	581	170530											
SERPINA4	5267	broad.mit.edu	37	chr14	95030054	95030054	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagaacatctttttctccCcgctgagcatctcggcggcc	10	14	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95030054	A	A	95030054	3	1	225	1	0	0	0	0	1	0	0	0	14204	623	22	2	237	2	SERPINA4	14	95030054	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	981484	95030054	12319486	582	170531											
DYNC1H1	1778	broad.mit.edu	37	chr14	102508450	102508450	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaacacgcagatcacttCaattgcaatcggtaaggatg	10	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102508450	T	T	102508450	3	4	225	1	0	0	0	0	1	0	0	0	4881	838	29	4	12465	4	DYNC1H1	14	102508450	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	7478396	102508450	4841090	583	170532											
TRAF3	7187	broad.mit.edu	37	chr14	103371649	103371649	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccaggtcctggagaccgCcagctacaatggagtgctca	11	13	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103371649	T	T	103371649	3	4	225	1	0	0	0	0	1	0	0	0	16563	739	26	4	1273	4	TRAF3	14	103371649	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	863199	103371649	3977891	584	170533											
INF2	64423	broad.mit.edu	37	chr14	105177174	105177174	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcctggggaggagccaGggagtgcaggggcactggca	20	9	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105177174	A	A	105177174	1	1	225	0	1	0	0	0	0	0	0	0	7804	1015	35	4		4	INF2	14	105177174	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1805525	105177174	2172366	585	170534											
POTEB	339010	broad.mit.edu	37	chr15	21071181	21071181	+	Intron	DEL	C	-	-													ccccccatgtcccgcctcctCccatcccaggcccggttacc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21071181	-	-	21071181	6	5	225	0	1	1	0	1	0	0	0	0	12357	870	30	0		0	POTEB	15	21071181	Intron	DEL	C	TCGA-91-6828-01A-11D-1855-08		21071181	81460211	586	170535											
OCA2	4948	broad.mit.edu	37	chr15	28235701	28235701	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgagtggtaagccagggAttgggactgtgacaacttac	13	8	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28235701	T	T	28235701	1	4	225	0	1	0	0	0	0	0	0	0	10910	348	12	5		5	OCA2	15	28235701	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	7164520	28235701	74295691	587	170536											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32915737	32915737	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagaagaccatattcataCcgaagggctttttcggaaat	8	7	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32915737	A	A	32915737	3	1	225	1	0	0	0	0	1	0	0	0	865	507	18	3	255	3	ARHGAP11A	15	32915737	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	4680036	32915737	69615655	588	170537											
RYR3	6263	broad.mit.edu	37	chr15	33955137	33955137	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagactcgattacccgaatcCgtcaagctgcaggtaagctg	10	12	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33955137	A	A	33955137	2	1	225	1	0	0	0	0	0	0	0	1	13881	639	23	1		1	RYR3	15	33955137	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	1039400	33955137	68576255	589	170538											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42138620	42138620	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcctgtggccacctgaGccttgagtccccagtccaga	10	16	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42138620	T	T	42138620	1	4	225	0	1	0	0	0	0	0	0	0	8025	986	34	3		3	JMJD7-PLA2G4B	15	42138620	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	8183483	42138620	60392772	590	170539											
TGM7	116179	broad.mit.edu	37	chr15	43568648	43568648	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagggcagctggagggcGggtctcagggagccccagcc	20	11	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43568648	T	T	43568648	1	4	225	0	1	0	0	0	0	0	0	0	15958	1131	39	1		1	TGM7	15	43568648	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	1430028	43568648	58962744	591	170540											
GNB5	10681	broad.mit.edu	37	chr15	52427625	52427625	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtagctgcccaccaagccCccgagaggggcctggagcca	13	16	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52427625	A	A	52427625	1	1	225	0	1	0	0	0	0	0	0	0	6585	638	22	2		2	GNB5	15	52427625	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	8858977	52427625	50103767	592	170541											
VPS13C	54832	broad.mit.edu	37	chr15	62161883	62161883	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	taaatgagcaagtttgagctCaaccaaaacctgggccagat	9	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62161883	T	T	62161883	1	4	225	0	1	0	0	0	0	0	0	0	17318	841	29	4		4	VPS13C	15	62161883	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	9734258	62161883	40369509	593	170542											
HEXA	3073	broad.mit.edu	37	chr15	72640157	72640157	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcagatgggttctagactGtttgtgccagtgctctaggg	14	8	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72640157	A	A	72640157	1	1	225	0	1	0	0	0	0	0	0	0	7140	1392	48	4		4	HEXA	15	72640157	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	10478274	72640157	29891235	594	170543											
PML	5371	broad.mit.edu	37	chr15	74290522	74290522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaggtgcagacacacccGccctggataacgtctttttc	8	15	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74290522	T	T	74290522	3	4	225	1	0	0	0	0	1	0	0	0	12230	1087	38	3	313	3	PML	15	74290522	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1650365	74290522	28240870	595	170544											
CLK3	1198	broad.mit.edu	37	chr15	74917167	74917167	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtgtttgttgggagttGctgggttggggtggagggtt	22	1	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74917167	T	T	74917167	1	4	225	0	1	0	0	0	0	0	0	0	3570	1334	46	3		3	CLK3	15	74917167	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	626645	74917167	27614225	596	170545											
PTPN9	5780	broad.mit.edu	37	chr15	75816478	75816478	+	Intron	DEL	C	-	-													taaaaaaaaaaaaaaaaaaaCaaagtccaaacaggacacca							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	75816478	-	-	75816478	6	5	225	0	1	1	0	1	0	0	0	0	12902	493	17	0		0	PTPN9	15	75816478	Intron	DEL	C	TCGA-91-6828-01A-11D-1855-08	899311	75816478	26714914	597	170546											
BCL2A1	597	broad.mit.edu	37	chr15	80260011	80260011	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gccactgactctaccagcatAggtgtgtgattgtgccattt	10	10	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80260011	T	T	80260011	1	4	225	0	1	0	0	0	0	0	0	0	1371	407	15	5		5	BCL2A1	15	80260011	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	4443533	80260011	22271381	598	170547											
NTRK3	4916	broad.mit.edu	37	chr15	88669523	88669523	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcattccaaatttggaccGtcgaccatatttgttgatca	6	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88669523	C	C	88669523	3	2	225	1	0	0	0	0	1	0	0	0	10803	1144	40	4	1438	4	NTRK3	15	88669523	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	8409512	88669523	13861869	599	170548											
MFGE8	4240	broad.mit.edu	37	chr15	89450563	89450563	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacgaggcggcgatctgtgAgttggcaatgttcccattct	13	9	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89450563	G	G	89450563	3	3	225	1	0	0	0	0	1	0	0	0	9613	304	11	5	937	5	MFGE8	15	89450563	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	781040	89450563	13080829	600	170549											
ABHD2	11057	broad.mit.edu	37	chr15	89698682	89698682	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcgttgactacgcccagaAaaatggctatcggtgcgccg	11	11	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89698682	G	G	89698682	3	3	225	1	0	0	0	0	1	0	0	0	82	14	1	5	465	5	ABHD2	15	89698682	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	248119	89698682	12832710	601	170550											
MAN2A2	4122	broad.mit.edu	37	chr15	91455583	91455583	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggcactgtgcagagcGgcctcccggccctgtgagca	16	13	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91455583	A	A	91455583	1	1	225	0	1	0	0	0	0	0	0	0	9307	1131	39	4		4	MAN2A2	15	91455583	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1756901	91455583	11075809	602	170551											
ADAMTS17	170691	broad.mit.edu	37	chr15	100591842	100591842	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgaacaaagagtcctgcGgtttttctggttcgctttga	11	7	1	4	rs141306868		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100591842	T	T	100591842	3	4	225	1	0	0	0	0	1	0	0	0	262	1116	39	1	921	1	ADAMTS17	15	100591842	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	9136259	100591842	1939550	603	170552											
ADAMTS17	170691	broad.mit.edu	37	chr15	100672250	100672250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcctgaagcgggctccCgtcccacatgttcggctgca	11	16	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100672250	A	A	100672250	2	1	225	1	0	0	0	0	0	0	0	1	262	639	23	1		1	ADAMTS17	15	100672250	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	80408	100672250	1859142	604	170553											
LRRK1	79705	broad.mit.edu	37	chr15	101464888	101464888	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtactggtgtgtggggccGgaggagtcagctgtgtgtcc	18	7	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101464888	C	C	101464888	2	2	225	1	0	0	0	0	0	0	0	1	9119	1103	39	4		4	LRRK1	15	101464888	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	792638	101464888	1066504	605	170554											
SOLH	6650	broad.mit.edu	37	chr16	601384	601384	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggcctgcgcccccggCatgcctactccatcctggat	11	18	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	601384	A	A	601384	3	1	225	1	0	0	0	0	1	0	0	0	15039	710	25	3	2167	3	SOLH	16	601384	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08		601384	89753369	606	170555											
GFER	2671	broad.mit.edu	37	chr16	2035892	2035892	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaaccacccagacaccCgcacccgggcatgcttcaca	9	18	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2035892	A	A	2035892	3	1	225	1	0	0	0	0	1	0	0	0	6402	652	23	1	491	1	GFER	16	2035892	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1434508	2035892	88318861	607	170556											
CORO7	79585	broad.mit.edu	37	chr16	4408565	4408565	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctccccagggtgccggcaCccctcacttaggaccaccat	9	18	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4408565	T	T	4408565	1	4	225	0	1	0	0	0	0	0	0	0	3791	522	18	4		4	CORO7	16	4408565	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2372673	4408565	85946188	608	170557											
ERCC4	2072	broad.mit.edu	37	chr16	14029250	14029250	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagaaagaaccctcaaaaaGaaaaaacggaagttgacctt	7	7	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14029250	C	C	14029250	3	2	225	1	0	0	0	0	1	0	0	0	5257	933	33	4	1491	4	ERCC4	16	14029250	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	9620685	14029250	76325503	609	170558											
MYH11	4629	broad.mit.edu	37	chr16	15829337	15829337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccttgttcctggcggccCgctctgagtccaggtcctcc	11	17	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15829337	A	A	15829337	3	1	225	1	0	0	0	0	1	0	0	0	10125	652	23	1	2625	1	MYH11	16	15829337	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1800087	15829337	74525416	610	170559											
XYLT1	64131	broad.mit.edu	37	chr16	17228489	17228489	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagcgcaggcccggggtaCctgcagggtagttcccgtac	16	12	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17228489	G	G	17228489	3	3	225	1	0	0	0	0	1	0	0	0	17590	507	18	4	1027	4	XYLT1	16	17228489	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1399152	17228489	73126264	611	170560											
DNAH3	55567	broad.mit.edu	37	chr16	20996905	20996905	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatagtgctccatgaccaCagtcagctgtttcaggtcag	10	11	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20996905	T	T	20996905	3	4	225	1	0	0	0	0	1	0	0	0	4643	478	17	4	5250	4	DNAH3	16	20996905	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3768416	20996905	69357848	612	170561											
DNAH3	55567	broad.mit.edu	37	chr16	21133528	21133528	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttatacattcatagaaCtacatgaggaccagaaaagg	7	6	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21133528	A	A	21133528	1	1	225	0	1	0	0	0	0	0	0	0	4643	580	20	3		3	DNAH3	16	21133528	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	136623	21133528	69221225	613	170562											
OTOA	146183	broad.mit.edu	37	chr16	21698947	21698947	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcggctccctcgggacctgCgcgaggatgcctttaagaac	13	13	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21698947	G	G	21698947	3	3	225	1	0	0	0	0	1	0	0	0	11396	768	27	4	673	4	OTOA	16	21698947	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	565419	21698947	68655806	614	170563											
PDZD9	255762	broad.mit.edu	37	chr16	22009634	22009634	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggctccttacagaagaagGacatgtctcaggagtttgat	11	7	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22009634	A	A	22009634	1	1	225	0	1	0	0	0	0	0	0	0	11800	1189	41	4		4	PDZD9	16	22009634	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	310687	22009634	68345119	615	170564											
IL21R	50615	broad.mit.edu	37	chr16	27459937	27459937	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctccaccctggaggtgtAcagctgccacccaccacgga	10	18	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27459937	G	G	27459937	3	3	225	1	0	0	0	0	1	0	0	0	7741	391	14	5	980	5	IL21R	16	27459937	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	5450303	27459937	62894816	616	170565											
NUPR1	26471	broad.mit.edu	37	chr16	28550162	28550162	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtcagattcatccaggcTggagtcctcgtcctccgggc	13	13	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	28550162	G	G	28550162	3	3	225	1	0	0	0	0	1	0	0	0	10871	1580	55	5	243	5	NUPR1	16	28550162	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1090225	28550162	61804591	617	170566											
SH2B1	25970	broad.mit.edu	37	chr16	28884516	28884516	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaggctgggagccatgcGggggtgtgcgagggagatgg	23	6	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28884516	T	T	28884516	1	4	225	0	1	0	0	0	0	0	0	0	14340	1116	39	1		1	SH2B1	16	28884516	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	334354	28884516	61470237	618	170567											
KCTD13	253980	broad.mit.edu	37	chr16	29934554	29934554	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caatcaggccctgcaccaggTagtagcgtgcttcgcccagc	11	15	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29934554	G	G	29934554	3	3	225	1	0	0	0	0	1	0	0	0	8170	1638	57	5	638	5	KCTD13	16	29934554	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1050038	29934554	60420199	619	170568											
FAM57B	83723	broad.mit.edu	37	chr16	30041831	30041831	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaacaccacccccccggcCaccatcggggtcagcatggt	12	17	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30041831	A	A	30041831	2	1	225	1	0	0	0	0	0	0	0	1	5640	581	21	2		2	FAM57B	16	30041831	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	107277	30041831	60312922	620	170569											
PRR14	78994	broad.mit.edu	37	chr16	30667570	30667570	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctccagcagcggctggagGagctagatgccttgctcctg	14	12	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30667570	A	A	30667570	3	1	225	1	0	0	0	0	1	0	0	0	12692	1175	41	4	1738	4	PRR14	16	30667570	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	625739	30667570	59687183	621	170570											
PRSS36	146547	broad.mit.edu	37	chr16	31157117	31157117	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccttccctcacctggcagGtgtccctgcggccctctggg	13	17	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31157117	C	C	31157117	3	2	225	1	0	0	0	0	1	0	0	0	12731	1261	44	4	1894	4	PRSS36	16	31157117	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	489547	31157117	59197636	622	170571											
ITGAX	3687	broad.mit.edu	37	chr16	31368548	31368548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaggaagcaggggcagcCccccagcagcccgctgtgtc	16	14	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31368548	A	A	31368548	1	1	225	0	1	0	0	0	0	0	0	0	7959	638	22	2		2	ITGAX	16	31368548	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	211431	31368548	58986205	623	170572											
ITGAD	3681	broad.mit.edu	37	chr16	31422267	31422267	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtggggacagtggccggGgctagggagaggatggaggg	25	4	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31422267	A	A	31422267	1	1	225	0	1	0	0	0	0	0	0	0	7954	1247	43	4		4	ITGAD	16	31422267	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	53719	31422267	58932486	624	170573											
MYLK3	91807	broad.mit.edu	37	chr16	46761018	46761018	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtggcctgtcccagactcCagaactacaaaatgacagag	10	11	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46761018	A	A	46761018	1	1	225	0	1	0	0	0	0	0	0	0	10152	609	21	2		2	MYLK3	16	46761018	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	15338751	46761018	43593735	625	170574											
C16orf87	388272	broad.mit.edu	37	chr16	46865169	46865169	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgggcctcaaacaagcctcTggcgggtgcgcgcgcgcgcg	17	15	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46865169	C	C	46865169	1	2	225	0	1	0	0	0	0	0	0	0	1854	1595	55	5		5	C16orf87	16	46865169	5'Flank	SNP	T	TCGA-91-6828-01A-11D-1855-08	104151	46865169	43489584	626	170575											
BRD7	29117	broad.mit.edu	37	chr16	50388360	50388360	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaattgtctcatcagttgaTtcaaagcttcttgaaggggt	10	7	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50388360	C	C	50388360	3	2	225	1	0	0	0	0	1	0	0	0	1514	1493	52	5	1592	5	BRD7	16	50388360	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	3523191	50388360	39966393	627	170576											
CHD9	80205	broad.mit.edu	37	chr16	53191487	53191487	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcttttattttggagatttGggggtagggcggactgttag	16	3	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53191487	T	T	53191487	1	4	225	0	1	0	0	0	0	0	0	0	3363	1363	47	2		2	CHD9	16	53191487	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2803127	53191487	37163266	628	170577											
MT1A	4489	broad.mit.edu	37	chr16	56669610	56669610	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggcaaggcctctgcgccCggcccccttccttgagtagg	14	16	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56669610	A	A	56669610	1	1	225	0	1	0	0	0	0	0	0	0	9991	667	23	1		1	MT1A	16	56669610	5'Flank	SNP	C	TCGA-91-6828-01A-11D-1855-08	3478123	56669610	33685143	629	170578											
SLC9A5	6553	broad.mit.edu	37	chr16	67286441	67286441	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcactctttttgcattGcagtgtttcacctgtctcgg	8	12	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67286441	T	T	67286441	1	4	225	0	1	0	0	0	0	0	0	0	14831	1334	46	3		3	SLC9A5	16	67286441	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	10616831	67286441	23068312	630	170579											
HYDIN	54768	broad.mit.edu	37	chr16	70843883	70843883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtttctccagctttcaGgggctgaaattcaaatgaga	11	7	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70843883	T	T	70843883	3	4	225	1	0	0	0	0	1	0	0	0	7537	991	35	2	687	2	HYDIN	16	70843883	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3557442	70843883	19510870	631	170580											
PHLPP2	23035	broad.mit.edu	37	chr16	71715483	71715483	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttacatcaatcttctgtttTatggggggaaagggcaggta	12	5	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71715483	C	C	71715483	1	2	225	0	1	0	0	0	0	0	0	0	11950	1769	61	5		5	PHLPP2	16	71715483	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	871600	71715483	18639270	632	170581											
PMFBP1	83449	broad.mit.edu	37	chr16	72174447	72174447	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaggagaagtgtatatcCgtacctttgaatgatcaccc	9	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72174447	A	A	72174447	3	1	225	1	0	0	0	0	1	0	0	0	12229	652	23	1	2476	1	PMFBP1	16	72174447	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	458964	72174447	18180306	633	170582											
BCAR1	9564	broad.mit.edu	37	chr16	75269174	75269174	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atcttctgcagctgccggctAagcttggcatgcagggcacg	13	12	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75269174	T	T	75269174	2	4	225	1	0	0	0	0	0	0	0	1	1353	349	13	5		5	BCAR1	16	75269174	Silent	SNP	A	TCGA-91-6828-01A-11D-1855-08	3094727	75269174	15085579	634	170583											
PKD1L2	114780	broad.mit.edu	37	chr16	81241365	81241365	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttttttttttttttttTttttttctcacagggtcttg	6	5	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81241365	C	C	81241365	1	2	225	0	1	0	0	0	0	0	0	0	12060	1856	64	5		5	PKD1L2	16	81241365	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	5972191	81241365	9113388	635	170584											
CMIP	80790	broad.mit.edu	37	chr16	81694618	81694618	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgcgcataccagggaTtgggtttgcacagaaaggcc	13	10	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81694618	A	A	81694618	1	1	225	0	1	0	0	0	0	0	0	0	3610	1508	52	5		5	CMIP	16	81694618	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	453253	81694618	8660135	636	170585											
KLHDC4	54758	broad.mit.edu	37	chr16	87743082	87743082	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgtcttcgtcctcagaCcggggctgccccgccgagcc	13	17	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87743082	A	A	87743082	2	1	225	1	0	0	0	0	0	0	0	1	8429	494	18	3		3	KLHDC4	16	87743082	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	6048464	87743082	2611671	637	170586											
TUBB3	10381	broad.mit.edu	37	chr16	89998933	89998933	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggaaagggcctggctgGggctatgggccggtgccgac	19	10	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89998933	T	T	89998933	1	4	225	0	1	0	0	0	0	0	0	0	16883	1247	43	2		2	TUBB3	16	89998933	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2255851	89998933	355820	638	170587											
GAS8	2622	broad.mit.edu	37	chr16	90104007	90104007	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaaggccctcatcttcacCacgtgctaccggccggcctt	9	17	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90104007	T	T	90104007	1	4	225	0	1	0	0	0	0	0	0	0	6313	609	21	4		4	GAS8	16	90104007	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	105074	90104007	250746	639	170588											
SRR	63826	broad.mit.edu	37	chr17	2218842	2218842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacccctttcttattcctGggtttcagaaccatgtgtgc	8	11	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2218842	T	T	2218842	1	4	225	0	1	0	0	0	0	0	0	0	15284	1363	47	2		2	SRR	17	2218842	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08		2218842	78976368	640	170589											
PLSCR3	57048	broad.mit.edu	37	chr17	7296316	7296316	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcggaggcaggggtccCagctctatcatctgtctatt	11	12	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7296316	A	A	7296316	1	1	225	0	1	0	0	0	0	0	0	0	12206	609	21	2		2	PLSCR3	17	7296316	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5077474	7296316	73898894	641	170590											
DNAH2	146754	broad.mit.edu	37	chr17	7707808	7707808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggcccacgcccacccccCgtgccccactcccaccagtg	8	24	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7707808	A	A	7707808	1	1	225	0	1	0	0	0	0	0	0	0	4642	667	23	1		1	DNAH2	17	7707808	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	411492	7707808	73487402	642	170591											
MYH13	8735	broad.mit.edu	37	chr17	10267796	10267796	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctccttctctggtttccGgaggtagggagctgcttctc	11	12	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10267796	T	T	10267796	2	4	225	1	0	0	0	0	0	0	0	1	10126	1115	39	1		1	MYH13	17	10267796	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	2559988	10267796	70927414	643	170592											
MYOCD	93649	broad.mit.edu	37	chr17	12666716	12666716	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgcacatgagatcttgCcaggccccctctctccaatg	7	15	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12666716	G	G	12666716	3	3	225	1	0	0	0	0	1	0	0	0	10181	739	26	4	2782	4	MYOCD	17	12666716	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2398920	12666716	68528494	644	170593											
TRIM16L	147166	broad.mit.edu	37	chr17	18634327	18634327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacttaatgaggagagaaGcccgagtttagaaatacaga	12	5	0	5			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18634327	T	T	18634327	1	4	225	0	1	0	0	0	0	0	0	0	16616	986	34	3		3	TRIM16L	17	18634327	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	5967611	18634327	62560883	645	170594											
SLC47A2	146802	broad.mit.edu	37	chr17	19611846	19611846	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggagttggaagaggctggGacgcacagcctctcacctgc	15	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19611846	T	T	19611846	1	4	225	0	1	0	0	0	0	0	0	0	14762	1189	41	3		3	SLC47A2	17	19611846	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	977519	19611846	61583364	646	170595											
SLC6A4	6532	broad.mit.edu	37	chr17	28525391	28525391	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttagctggaaactcattcActtggaggggagaaggcagg	15	7	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28525391	T	T	28525391	1	4	225	0	1	0	0	0	0	0	0	0	14800	174	6	5		5	SLC6A4	17	28525391	3'UTR	SNP	A	TCGA-91-6828-01A-11D-1855-08	8913545	28525391	52669819	647	170596											
RAB11FIP4	84440	broad.mit.edu	37	chr17	29758784	29758784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagctccctgagtcttcGggagatccttgggtgtctca	11	13	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29758784	T	T	29758784	1	4	225	0	1	0	0	0	0	0	0	0	13004	1131	39	1		1	RAB11FIP4	17	29758784	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1233393	29758784	51436426	648	170597											
TADA2A	6871	broad.mit.edu	37	chr17	35771598	35771598	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctcactgcaacttctgcCtcccggctttaaacggttct	8	14	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35771598	T	T	35771598	1	4	225	0	1	0	0	0	0	0	0	0	15629	696	24	4		4	TADA2A	17	35771598	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	6012814	35771598	45423612	649	170598											
KRT26	353288	broad.mit.edu	37	chr17	38922678	38922678	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatttccttaggttatttgAccagtaggatttttgcaaag	8	5	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38922678	T	T	38922678	1	4	225	0	1	0	0	0	0	0	0	0	8534	290	10	5		5	KRT26	17	38922678	3'UTR	SNP	A	TCGA-91-6828-01A-11D-1855-08	3151080	38922678	42272532	650	170599											
KRT35	3886	broad.mit.edu	37	chr17	39633867	39633867	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtactcctggttctgccGctccaggtcagcccggatct	11	15	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39633867	A	A	39633867	3	1	225	1	0	0	0	0	1	0	0	0	8543	1086	38	4	252	4	KRT35	17	39633867	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	711189	39633867	41561343	651	170600											
NBR1	4077	broad.mit.edu	37	chr17	41345097	41345097	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcaagtgactaagcatctGaatttctgttcaggctccct	8	11	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41345097	T	T	41345097	1	4	225	0	1	0	0	0	0	0	0	0	10295	1305	45	3		3	NBR1	17	41345097	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1711230	41345097	39850113	652	170601											
NFE2L1	4779	broad.mit.edu	37	chr17	46128597	46128597	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acctcacagcttcccccactCcgggagatcatcctggggcc	9	18	2	1	rs141933946	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46128597	T	T	46128597	2	4	225	1	0	0	0	0	0	0	0	1	10462	842	30	4		4	NFE2L1	17	46128597	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	4783500	46128597	35066613	653	170602											
HOXB8	3218	broad.mit.edu	37	chr17	46690530	46690530	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggacccgcggacgtgcGggcggccgcggccctggcag	20	16	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46690530	T	T	46690530	1	4	225	0	1	0	0	0	0	0	0	0	7374	1131	39	1		1	HOXB8	17	46690530	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	561933	46690530	34504680	654	170603											
ANKRD40	91369	broad.mit.edu	37	chr17	48776867	48776867	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacattggtggcttggacGggacagaagaaaacagggag	17	5	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48776867	T	T	48776867	3	4	225	1	0	0	0	0	1	0	0	0	669	1116	39	1	447	1	ANKRD40	17	48776867	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2086337	48776867	32418343	655	170604											
SPAG9	9043	broad.mit.edu	37	chr17	49079164	49079164	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	catgagaacacgggccatttCtactctagtaaaccgtttcc	7	12	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49079164	G	G	49079164	3	3	225	1	0	0	0	0	1	0	0	0	15101	922	32	4	2518	4	SPAG9	17	49079164	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	302297	49079164	32116046	656	170605											
ANKFN1	162282	broad.mit.edu	37	chr17	54230859	54230859	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcaactcaagagctcagtCctgtgtctctcatggaggcg	10	11	5	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54230859	T	T	54230859	1	4	225	0	1	0	0	0	0	0	0	0	625	870	30	4		4	ANKFN1	17	54230859	5'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	5151695	54230859	26964351	657	170606											
SEPT4	5414	broad.mit.edu	37	chr17	56598437	56598437	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttctcataatgtgtctccCgtgtcacatccttcaggtcc	7	13	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56598437	A	A	56598437	3	1	225	1	0	0	0	0	1	0	0	0	14179	652	23	1	249	1	SEPT4	17	56598437	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2367578	56598437	24596773	658	170607											
CA4	762	broad.mit.edu	37	chr17	58235360	58235360	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcccccagatcgggagaaTgaactggccaccaccactgg	11	16	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58235360	A	A	58235360	1	1	225	0	1	0	0	0	0	0	0	0	2544	1479	51	5		5	CA4	17	58235360	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	1636923	58235360	22959850	659	170608											
BRIP1	83990	broad.mit.edu	37	chr17	59861830	59861830	+	Intron	DEL	T	-	-													atagaggggttgggagggaaTtggaaaaagaaacttctcaa							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	59861830	-	-	59861830	6	5	225	0	1	1	0	1	0	0	0	0	1523	1508	52	0		0	BRIP1	17	59861830	Intron	DEL	T	TCGA-91-6828-01A-11D-1855-08	1626470	59861830	21333380	660	170609											
INTS2	57508	broad.mit.edu	37	chr17	59967149	59967149	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctacgtacaacttacctAaagtcttcgtgtttgctaga	6	11	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	59967149	G	G	59967149	3	3	225	1	0	0	0	0	1	0	0	0	7848	372	13	5	1652	5	INTS2	17	59967149	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	105319	59967149	21228061	661	170610											
SCN4A	6329	broad.mit.edu	37	chr17	62043558	62043558	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctggtgtagccatagttGgggttccgcccggtcttgat	14	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62043558	T	T	62043558	2	4	225	1	0	0	0	0	0	0	0	1	14033	1335	47	2		2	SCN4A	17	62043558	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	2076409	62043558	19151652	662	170611											
PRKCA	5578	broad.mit.edu	37	chr17	64299225	64299225	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccggcgcgtccgccccgGggctggctcactccgataac	13	18	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64299225	T	T	64299225	1	4	225	0	1	0	0	0	0	0	0	0	12613	1247	43	2		2	PRKCA	17	64299225	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2255667	64299225	16895985	663	170612											
BPTF	2186	broad.mit.edu	37	chr17	65871782	65871782	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagggaggagccctgtgGggtgtctctcagaaaccccc	14	12	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65871782	T	T	65871782	1	4	225	0	1	0	0	0	0	0	0	0	1504	1232	43	2		2	BPTF	17	65871782	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1572557	65871782	15323428	664	170613											
ABCA5	23461	broad.mit.edu	37	chr17	67250407	67250407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttaaaaatatgaaatgCaaacctttcctctaagtaac	3	7	1	1	rs139464373	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67250407	A	A	67250407	1	1	225	0	1	0	0	0	0	0	0	0	35	725	25	3		3	ABCA5	17	67250407	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1378625	67250407	13944803	665	170614											
KIAA0195	9772	broad.mit.edu	37	chr17	73495347	73495347	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcctgccccaccagggtcCgagtccgctaccagaagcga	10	17	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73495347	A	A	73495347	2	1	225	1	0	0	0	0	0	0	0	1	8230	644	23	1		1	KIAA0195	17	73495347	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	6244940	73495347	7699863	666	170615											
TRIM47	91107	broad.mit.edu	37	chr17	73870436	73870436	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgagtgtataaaaaggtGgaagcctctagaaatgagaa	13	4	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73870436	T	T	73870436	1	4	225	0	1	0	0	0	0	0	0	0	16647	1363	47	2		2	TRIM47	17	73870436	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	375089	73870436	7324774	667	170616											
RHBDF2	79651	broad.mit.edu	37	chr17	74473792	74473792	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatcgaccacatcctcctCcaggaagctcgggaaggcaa	9	16	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74473792	A	A	74473792	4	1	225	1	0	0	0	0	0	1	0	0	13429	864	30	3	1787	3	RHBDF2	17	74473792	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	603356	74473792	6721418	668	170617											
SFRS2	6427	broad.mit.edu	37	chr17	74732124	74732124	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaaaggtgagtaacctccGagcagcactcctaatgatag	9	12	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74732124	T	T	74732124	1	4	225	0	1	0	0	0	0	0	0	0	14288	1073	37	3		3	SFRS2	17	74732124	3'UTR	SNP	G	TCGA-91-6828-01A-11D-1855-08	258332	74732124	6463086	669	170618											
ENPP7	339221	broad.mit.edu	37	chr17	77709206	77709206	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	catgacgaccgtggacaaacGggctggcgacctggttgaat	14	10	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77709206	A	A	77709206	3	1	225	1	0	0	0	0	1	0	0	0	5177	1116	39	4	774	4	ENPP7	17	77709206	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	2977082	77709206	3486004	670	170619											
AATK	9625	broad.mit.edu	37	chr17	79094822	79094822	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgtctcgggcccggggcCctcaccctctgaggccagct	13	18	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79094822	G	G	79094822	3	3	225	1	0	0	0	0	1	0	0	0	26	623	22	4	1226	4	AATK	17	79094822	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1385616	79094822	2100388	671	170620											
NARF	26502	broad.mit.edu	37	chr17	80436742	80436742	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacctctgcaccgccaagtCcccccagcaggtcatgggct	9	19	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80436742	T	T	80436742	3	4	225	1	0	0	0	0	1	0	0	0	10261	855	30	4	609	4	NARF	17	80436742	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1341920	80436742	758468	672	170621											
ENOSF1	55556	broad.mit.edu	37	chr18	674401	674401	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttctgttgagtagccGggatcctatcaaagaccaaa	8	9	3	2	rs137865368	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	674401	T	T	674401	2	4	225	1	0	0	0	0	0	0	0	1	5167	1103	39	1		1	ENOSF1	18	674401	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08		674401	77402847	673	170622											
AFG3L2	10939	broad.mit.edu	37	chr18	12356752	12356752	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatccactaacggtgatgaAggggacattggcttctccgg	13	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12356752	G	G	12356752	3	3	225	1	0	0	0	0	1	0	0	0	360	72	3	5	1324	5	AFG3L2	18	12356752	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	11682351	12356752	65720496	674	170623											
CEP192	55125	broad.mit.edu	37	chr18	13067989	13067989	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagtaagaaaccatttacAgaatgcactgatcttatgaa	6	7	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	13067989	G	G	13067989	1	3	225	0	1	0	0	0	0	0	0	0	3281	203	7	5		5	CEP192	18	13067989	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	711237	13067989	65009259	675	170624											
CEP192	55125	broad.mit.edu	37	chr18	13087217	13087217	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ctcagaaaaaagttttgctgGatcctaaagtattgaggatt	9	5	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13087217	C	C	13087217	3	2	225	1	0	0	0	0	1	0	0	0	3281	1174	41	4	5936	4	CEP192	18	13087217	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	19228	13087217	64990031	676	170625											
C18orf1	753	broad.mit.edu	37	chr18	13387596	13387596	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgggccgcggatgctcCcagaggccggcccagcagag	17	14	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13387596	T	T	13387596	1	4	225	0	1	0	0	0	0	0	0	0	1912	638	22	4		4	C18orf1	18	13387596	5'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	300379	13387596	64689652	677	170626											
MIB1	57534	broad.mit.edu	37	chr18	19345792	19345792	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaaccaatcattggcattCgatggaagtgtgcagagtgt	12	7	1	1	rs151095403		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19345792	T	T	19345792	4	4	225	1	0	0	0	0	0	1	0	0	9659	876	31	4	295	4	MIB1	18	19345792	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5958196	19345792	58731456	678	170627											
CTAGE1	64693	broad.mit.edu	37	chr18	19997690	19997690	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatctaaaacttctccacaAgaagagaacagcaaaaaatc	5	9	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19997690	G	G	19997690	2	3	225	1	0	0	0	0	0	0	0	1	4026	69	3	5		5	CTAGE1	18	19997690	Silent	SNP	A	TCGA-91-6828-01A-11D-1855-08	651898	19997690	58079558	679	170628											
DSC3	1825	broad.mit.edu	37	chr18	28574414	28574414	+	Intron	SNP	A	T	T													tgaacataaaatttatttttAtttaccttttatgtttaatt							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28574414	T	T	28574414	1	4	225	0	1	0	0	0	0	0	0	0	4807	464	16	5		5	DSC3	18	28574414	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	8576724	28574414	49502834	680	170629	708	3									
DSC3	1825	broad.mit.edu	37	chr18	28574418	28574418	+	Intron	SNP	A	C	C													cataaaatttatttttatttAccttttatgtttaattttta							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28574418	C	C	28574418	1	2	225	0	1	0	0	0	0	0	0	0	4807	405	14	5		5	DSC3	18	28574418	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	4	28574418	49502830	681	170630	708	3									
DSC3	1825	broad.mit.edu	37	chr18	28574425	28574425	+	Intron	DEL	A	-	-													tttatttttatttaccttttAtgtttaatttttaaccagtg							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	28574425	-	-	28574425	6	5	225	0	1	1	0	1	0	0	0	0	4807	464	16	0		0	DSC3	18	28574425	Intron	DEL	A	TCGA-91-6828-01A-11D-1855-08	7	28574425	49502823	682	170631	708	3									
RNF125	54941	broad.mit.edu	37	chr18	29648171	29648171	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcgtaactttagttccctAcaaaatgagggtgttgcatt	8	8	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29648171	G	G	29648171	1	3	225	0	1	0	0	0	0	0	0	0	13545	406	14	5		5	RNF125	18	29648171	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	1073746	29648171	48429077	683	170632											
ASXL3	80816	broad.mit.edu	37	chr18	31324042	31324042	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagactctctggttgcacaCccgaccgtcgcaatgtttac	8	14	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31324042	A	A	31324042	3	1	225	1	0	0	0	0	1	0	0	0	1072	506	18	3	4276	3	ASXL3	18	31324042	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1675871	31324042	46753206	684	170633											
CELF4	56853	broad.mit.edu	37	chr18	34850743	34850743	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttacctgggtaggggtGgatgccattggcgaacacag	16	8	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34850743	T	T	34850743	3	4	225	1	0	0	0	0	1	0	0	0	3248	1348	47	2	393	2	CELF4	18	34850743	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3526701	34850743	43226505	685	170634											
RTTN	25914	broad.mit.edu	37	chr18	67855321	67855321	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatactattccctatatcCcaaagaaaacattgattctt	2	9	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67855321	A	A	67855321	1	1	225	0	1	0	0	0	0	0	0	0	13848	638	22	2		2	RTTN	18	67855321	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	33004578	67855321	10221927	686	170635											
ZNF236	7776	broad.mit.edu	37	chr18	74580626	74580626	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgctctgctcaccgatgGgttttctcttccagaatctc	8	12	4	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74580626	T	T	74580626	1	4	225	0	1	0	0	0	0	0	0	0	17915	1247	43	2		2	ZNF236	18	74580626	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	6725305	74580626	3496622	687	170636											
ZNF236	7776	broad.mit.edu	37	chr18	74592319	74592319	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttacgtgctcgtgctggGtcagaaaccagggatgataa	14	8	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74592319	C	C	74592319	1	2	225	0	1	0	0	0	0	0	0	0	17915	1276	44	4		4	ZNF236	18	74592319	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	11693	74592319	3484929	688	170637											
SHC2	25759	broad.mit.edu	37	chr19	440726	440726	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgtggcgtgaagtgggaggGaggtggggggcaccgaggct	23	6	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	440726	A	A	440726	1	1	225	0	1	0	0	0	0	0	0	0	14384	1189	41	4		4	SHC2	19	440726	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08		440726	58688257	689	170638											
POLRMT	5442	broad.mit.edu	37	chr19	630209	630209	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacatgagagggaccccctCcccattcgagcacccgtctc	10	17	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	630209	A	A	630209	1	1	225	0	1	0	0	0	0	0	0	0	12333	870	30	3		3	POLRMT	19	630209	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	189483	630209	58498774	690	170639											
MED16	10025	broad.mit.edu	37	chr19	878523	878523	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagccccacgtgccccagCagctcaccttcccgtggttg	9	20	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	878523	G	G	878523	1	3	225	0	1	0	0	0	0	0	0	0	9527	725	25	4		4	MED16	19	878523	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	248314	878523	58250460	691	170640											
GPR108	56927	broad.mit.edu	37	chr19	6731116	6731116	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagggtggagccctccaCcaagagctgggggacggggc	19	12	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6731116	T	T	6731116	3	4	225	1	0	0	0	0	1	0	0	0	6689	507	18	4	198	4	GPR108	19	6731116	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5852593	6731116	52397867	692	170641											
SH2D3A	10045	broad.mit.edu	37	chr19	6755294	6755294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgggtcactgctcgttcGgggcaaggcagatatgggca	15	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6755294	T	T	6755294	2	4	225	1	0	0	0	0	0	0	0	1	14346	1124	39	1		1	SH2D3A	19	6755294	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	24178	6755294	52373689	693	170642											
FCER2	2208	broad.mit.edu	37	chr19	7754258	7754258	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccagcgaccggagccccGcatcatcacgcagtcctcgc	10	18	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7754258	A	A	7754258	3	1	225	1	0	0	0	0	1	0	0	0	5833	1086	38	4	182	4	FCER2	19	7754258	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	998964	7754258	51374725	694	170643											
FBN3	84467	broad.mit.edu	37	chr19	8211048	8211048	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagccagcgtcccatcCgcacaggtgcacaggttggg	15	13	0	0	rs144757153		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8211048	A	A	8211048	2	1	225	1	0	0	0	0	0	0	0	1	5761	639	23	1		1	FBN3	19	8211048	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	456790	8211048	50917935	695	170644											
HNRNPM	4670	broad.mit.edu	37	chr19	8550609	8550609	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcatggatcgcgtgggctccGagatcgagcgcatgggcctg	17	11	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8550609	A	A	8550609	3	1	225	1	0	0	0	0	1	0	0	0	7338	1059	37	4	1351	4	HNRNPM	19	8550609	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	339561	8550609	50578374	696	170645											
MUC16	94025	broad.mit.edu	37	chr19	9000076	9000076	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccacctggctgcggacatCtccagggagtgcagaaggga	14	11	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9000076	A	A	9000076	1	1	225	0	1	0	0	0	0	0	0	0	10067	928	32	3		3	MUC16	19	9000076	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	449467	9000076	50128907	697	170646											
MUC16	94025	broad.mit.edu	37	chr19	9048993	9048993	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctagaactggtgaccaaagGggtcactactcctggtacct	10	12	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9048993	C	C	9048993	3	2	225	1	0	0	0	0	1	0	0	0	10067	1232	43	4	11205	4	MUC16	19	9048993	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	48917	9048993	50079990	698	170647											
OR7G2	390882	broad.mit.edu	37	chr19	9213076	9213076	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggggttcaccatttgagGgaacacagaatacatcactg	10	8	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9213076	T	T	9213076	3	4	225	1	0	0	0	0	1	0	0	0	11317	1232	43	2	132	2	OR7G2	19	9213076	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	164083	9213076	49915907	699	170648											
KANK2	25959	broad.mit.edu	37	chr19	11303645	11303645	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgggctctcaggcctacCaggcattgccagggccctca	13	14	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11303645	A	A	11303645	3	1	225	1	0	0	0	0	1	0	0	0	8047	594	21	2	1508	2	KANK2	19	11303645	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	2090569	11303645	47825338	700	170649											
ZNF442	79973	broad.mit.edu	37	chr19	12461717	12461717	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctccagtgtgagttctttCatgcatacgaaataaactag	7	9	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12461717	A	A	12461717	4	1	225	1	0	0	0	0	0	1	0	0	18042	835	29	3	1205	3	ZNF442	19	12461717	Nonsense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1158072	12461717	46667266	701	170650											
DNASE2	1777	broad.mit.edu	37	chr19	12986926	12986926	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacagtgtgcccccaccccGttgctcctctccctggttcc	7	20	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12986926	A	A	12986926	3	1	225	1	0	0	0	0	1	0	0	0	4704	1144	40	4	125	4	DNASE2	19	12986926	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	525209	12986926	46142057	702	170651											
FARSA	2193	broad.mit.edu	37	chr19	13033740	13033740	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttatcatgaggtcagcaCgtgcacccttctgctcagat	9	11	4	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13033740	A	A	13033740	1	1	225	0	1	0	0	0	0	0	0	0	5736	551	19	3		3	FARSA	19	13033740	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	46814	13033740	46095243	703	170652											
EMR3	84658	broad.mit.edu	37	chr19	14743801	14743801	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttcaaaatccaaaagacCaagataaacaatactaaatt	2	8	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14743801	G	G	14743801	3	3	225	1	0	0	0	0	1	0	0	0	5148	593	21	4	399	4	EMR3	19	14743801	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1710061	14743801	44385182	704	170653											
CALR3	125972	broad.mit.edu	37	chr19	16593223	16593223	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaaaacaaaacacacaCacgcaaaaaatctaaagtaa	2	9	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16593223	T	T	16593223	1	4	225	0	1	0	0	0	0	0	0	0	2619	493	17	4		4	CALR3	19	16593223	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1849422	16593223	42535760	705	170654											
ATP13A1	57130	broad.mit.edu	37	chr19	19760641	19760641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctgcaggtgggccaagCcgtcgcctgtgaggcacagt	16	12	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19760641	A	A	19760641	3	1	225	1	0	0	0	0	1	0	0	0	1127	739	26	3	1206	3	ATP13A1	19	19760641	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3167418	19760641	39368342	706	170655											
C19orf2	8725	broad.mit.edu	37	chr19	30498451	30498451	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaagcagatattgcaaatGatgtgaaatccaaggatttg	10	4	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30498451	C	C	30498451	3	2	225	1	0	0	0	0	1	0	0	0	1930	1290	45	4	618	4	C19orf2	19	30498451	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	10737810	30498451	28630532	707	170656											
ZNF536	9745	broad.mit.edu	37	chr19	30934761	30934761	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggacaccagcctcaacGggagggtggacttgcagcag	16	10	1	0	rs139989586		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30934761	T	T	30934761	3	4	225	1	0	0	0	0	1	0	0	0	18101	1116	39	1	294	1	ZNF536	19	30934761	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	436310	30934761	28194222	708	170657											
FXYD3	5349	broad.mit.edu	37	chr19	35614273	35614274	+	Intron	DEL	TG	-	-													ggtgtgtgtgtgtgtgtgtaTgtgtgtgtttgcacactgga					rs113577293	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35614274	-	-	35614273	6	5	225	0	1	1	0	1	0	0	0	0	6179	1479	51	0		0	FXYD3	19	35614273	Intron	DEL	TG	TCGA-91-6828-01A-11D-1855-08	4679512	35614273	23514710	709	170658											
SBSN	374897	broad.mit.edu	37	chr19	36018346	36018346	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagtatggtggaccccctGgccaaacttctctgtctcct	9	14	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36018346	T	T	36018346	1	4	225	0	1	0	0	0	0	0	0	0	13976	1357	47	2		2	SBSN	19	36018346	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	404073	36018346	23110637	710	170659											
ZNF420	147923	broad.mit.edu	37	chr19	37618662	37618662	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgaatgtaaagaatgtGggaaggcctttactcagaat	10	5	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37618662	T	T	37618662	3	4	225	1	0	0	0	0	1	0	0	0	18024	1348	47	2	779	2	ZNF420	19	37618662	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1600316	37618662	21510321	711	170660											
HKR1	284459	broad.mit.edu	37	chr19	37854368	37854368	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccttttatgtgcagggaGtgtggcagaaggtttcggca	15	6	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37854368	T	T	37854368	3	4	225	1	0	0	0	0	1	0	0	0	7261	1020	36	3	1685	3	HKR1	19	37854368	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	235706	37854368	21274615	712	170661											
FBXO17	115290	broad.mit.edu	37	chr19	39433312	39433312	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgccatagtgccccaccCaggaactcacgtctctcccg	10	18	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39433312	A	A	39433312	3	1	225	1	0	0	0	0	1	0	0	0	5787	595	21	2	67	2	FBXO17	19	39433312	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	1578944	39433312	19695671	713	170662											
MED29	55588	broad.mit.edu	37	chr19	39888162	39888162	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactctccaacgttggtgccCacagccaccaagcccgacgc	8	19	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39888162	A	A	39888162	2	1	225	1	0	0	0	0	0	0	0	1	9540	581	21	2		2	MED29	19	39888162	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	454850	39888162	19240821	714	170663											
FCGBP	8857	broad.mit.edu	37	chr19	40368642	40368642	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgggtatggagggagCcagtgtgccattagggaaga	17	6	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40368642	A	A	40368642	3	1	225	1	0	0	0	0	1	0	0	0	5835	739	26	3	3547	3	FCGBP	19	40368642	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	480480	40368642	18760341	715	170664											
HNRNPUL1	11100	broad.mit.edu	37	chr19	41782090	41782090	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacctccacttcaaggtgGcccgagatcggagtagtggc	14	12	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41782090	T	T	41782090	3	4	225	1	0	0	0	0	1	0	0	0	7341	1203	42	3	691	3	HNRNPUL1	19	41782090	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1413448	41782090	17346893	716	170665											
ARHGEF1	9138	broad.mit.edu	37	chr19	42406370	42406370	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccacaccgcagcaggcccCgcacagcatcttccagaccc	7	21	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42406370	A	A	42406370	1	1	225	0	1	0	0	0	0	0	0	0	895	667	23	1		1	ARHGEF1	19	42406370	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	624280	42406370	16722613	717	170666											
ATP1A3	478	broad.mit.edu	37	chr19	42473541	42473541	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggctggaacagctcacccCggggatcttacggtgggcag	15	11	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42473541	T	T	42473541	1	4	225	0	1	0	0	0	0	0	0	0	1134	667	23	4		4	ATP1A3	19	42473541	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	67171	42473541	16655442	718	170667											
MEGF8	1954	broad.mit.edu	37	chr19	42867243	42867243	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcagcccacctatgactgGacgtgcttcagccactctct	9	15	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42867243	T	T	42867243	3	4	225	1	0	0	0	0	1	0	0	0	9556	1183	41	3	6035	3	MEGF8	19	42867243	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	393702	42867243	16261740	719	170668											
PSG8	440533	broad.mit.edu	37	chr19	43258444	43258444	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaggccagatagactcCacctaaatccctattgccaa	6	14	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43258444	T	T	43258444	1	4	225	0	1	0	0	0	0	0	0	0	12767	609	21	4		4	PSG8	19	43258444	3'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	391201	43258444	15870539	720	170669											
PSG4	5672	broad.mit.edu	37	chr19	43698709	43698709	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttctcctgaacggtaataGgtgaatgaagggtaaatgct	11	5	1	3	rs146368793		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43698709	C	C	43698709	2	2	225	1	0	0	0	0	0	0	0	1	12763	987	35	4		4	PSG4	19	43698709	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	440265	43698709	15430274	721	170670											
ZNF235	9310	broad.mit.edu	37	chr19	44792687	44792687	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaatacctgagctataacTggtgtccttctcatgtgtac	9	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	44792687	C	C	44792687	3	2	225	1	0	0	0	0	1	0	0	0	17914	1580	55	5	1319	5	ZNF235	19	44792687	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1093978	44792687	14336296	722	170671											
SYMPK	8189	broad.mit.edu	37	chr19	46326729	46326729	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accagctctggggagggtggGactgcatggaagcagcagga	18	8	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46326729	C	C	46326729	2	2	225	1	0	0	0	0	0	0	0	1	15558	1188	41	4		4	SYMPK	19	46326729	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	1534042	46326729	12802254	723	170672											
FAM71E1	112703	broad.mit.edu	37	chr19	50979147	50979147	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aactggtcgaattcgccgctCtggaggtagcgttggagccg	15	10	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50979147	T	T	50979147	2	4	225	1	0	0	0	0	0	0	0	1	5662	912	32	4		4	FAM71E1	19	50979147	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	4652418	50979147	8149836	724	170673											
KLK2	3817	broad.mit.edu	37	chr19	51379887	51379887	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactccagccatgacctcatGctgctccgcctgtcagagcc	9	17	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51379887	T	T	51379887	3	4	225	1	0	0	0	0	1	0	0	0	8475	1319	46	3	376	3	KLK2	19	51379887	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	400740	51379887	7749096	725	170674											
KLK10	5655	broad.mit.edu	37	chr19	51518935	51518935	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagactcaagaatcctggccCcagcccctccccacttagac	6	19	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51518935	G	G	51518935	1	3	225	0	1	0	0	0	0	0	0	0	8469	638	22	4		4	KLK10	19	51518935	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	139048	51518935	7610048	726	170675											
C19orf75	284369	broad.mit.edu	37	chr19	51768813	51768813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctaacagcaccatcagcCtaactgaagagccagaaatg	10	11	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51768813	A	A	51768813	3	1	225	1	0	0	0	0	1	0	0	0	1969	680	24	2	220	2	C19orf75	19	51768813	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	249878	51768813	7360170	727	170676											
C19orf75	284369	broad.mit.edu	37	chr19	51769221	51769221	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagagagagcaaagacaGgacccctcccctcaaggagc	11	14	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51769221	T	T	51769221	1	4	225	0	1	0	0	0	0	0	0	0	1969	1015	35	2		2	C19orf75	19	51769221	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	408	51769221	7359762	728	170677											
ZNF880	400713	broad.mit.edu	37	chr19	52876300	52876300	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catccacttcaatcaagtcaGtccttacaactgtctcctca	3	15	5	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52876300	T	T	52876300	1	4	225	0	1	0	0	0	0	0	0	0	18326	1044	36	3		3	ZNF880	19	52876300	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1107079	52876300	6252683	729	170678											
ZNF331	55422	broad.mit.edu	37	chr19	54074619	54074619	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccacttcctggcaggtttGactaactgaggattctgcac	9	11	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54074619	T	T	54074619	1	4	225	0	1	0	0	0	0	0	0	0	17975	1305	45	3		3	ZNF331	19	54074619	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1198319	54074619	5054364	730	170679											
LILRB2	10288	broad.mit.edu	37	chr19	54779875	54779876	+	Intron	DNP	GG	TT	TT													catctgctggggcagagcaaGgggttcgtctcttgggaagg							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	54779876	TT	TT	54779875	1	4	225	0	1	0	0	0	0	0	0	0	8863	1015	35	2		2	LILRB2	19	54779875	Intron	DNP	GG	TCGA-91-6828-01A-11D-1855-08	705256	54779875	4349108	731	170680											
LILRB2	10288	broad.mit.edu	37	chr19	54780053	54780053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccggtgcccctttcccCattgctacggaaacttcggg	10	16	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54780053	A	A	54780053	1	1	225	0	1	0	0	0	0	0	0	0	8863	609	21	2		2	LILRB2	19	54780053	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	178	54780053	4348930	732	170681											
NLRP2	55655	broad.mit.edu	37	chr19	55494060	55494060	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgttacccaaggccgccCtgctggtcaccacgcggccc	11	17	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55494060	A	A	55494060	3	1	225	1	0	0	0	0	1	0	0	0	10572	680	24	2	1012	2	NLRP2	19	55494060	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	714007	55494060	3634923	733	170682											
NLRP4	147945	broad.mit.edu	37	chr19	56382140	56382140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaaattaagcaaatctcCctgagacaccacgtccctct	6	13	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56382140	A	A	56382140	1	1	225	0	1	0	0	0	0	0	0	0	10574	638	22	2		2	NLRP4	19	56382140	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	888080	56382140	2746843	734	170683											
ZNF444	55311	broad.mit.edu	37	chr19	56669857	56669857	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agttcaaaactgtgctctcaTttcaggggccagcagcctcc	9	13	3	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56669857	G	G	56669857	1	3	225	0	1	0	0	0	0	0	0	0	18044	1508	52	5		5	ZNF444	19	56669857	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	287717	56669857	2459126	735	170684											
ZNF530	348327	broad.mit.edu	37	chr19	58117956	58117956	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	caaggccttatgagtgcagtGaatgtggaaaatcctttagc	11	7	0	2	rs35182752		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58117956	A	A	58117956	3	1	225	1	0	0	0	0	1	0	0	0	18098	1291	45	4	1073	4	ZNF530	19	58117956	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	1448099	58117956	1011027	736	170685											
ZNF776	284309	broad.mit.edu	37	chr19	58239028	58239028	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccgcccacgcaccccccGcaggcactgaaacacccctc	7	23	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58239028	T	T	58239028	1	4	225	0	1	0	0	0	0	0	0	0	18278	1102	38	3		3	ZNF776	19	58239028	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	121072	58239028	889955	737	170686											
ZNF587	84914	broad.mit.edu	37	chr19	58262174	58262174	+	Translation_Start_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcactgtgacctttgaagatGtggctgtgaacttttcccag	11	9	0	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58262174	A	A	58262174	1	1	225	1	0	0	0	0	0	0	0	0	18147	1377	48	4		4	ZNF587	19	58262174	Translation_Start_Site	SNP	G	TCGA-91-6828-01A-11D-1855-08	23146	58262174	866809	738	170687											
ZNF586	54807	broad.mit.edu	37	chr19	58287980	58287980	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagtcttcttaatgaggctCagagatgcctgtaccgtgac	12	9	3	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58287980	A	A	58287980	3	1	225	1	0	0	0	0	1	0	0	0	18146	827	29	3	112	3	ZNF586	19	58287980	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	25806	58287980	841003	739	170688											
ZNF418	147686	broad.mit.edu	37	chr19	58439157	58439157	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatagggtttctctccaaggTactgattctggtgcggacgg	13	8	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58439157	A	A	58439157	3	1	225	1	0	0	0	0	1	0	0	0	18022	1638	57	5	1642	5	ZNF418	19	58439157	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	151177	58439157	689826	740	170689											
PLCB1	23236	broad.mit.edu	37	chr20	8698415	8698415	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagtcatcagaaggaagcgGcaaaaagaagctctcagaac	10	9	3	3	rs146833633		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8698415	A	A	8698415	3	1	225	1	0	0	0	0	1	0	0	0	12122	1203	42	4	1487	4	PLCB1	20	8698415	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08		8698415	54327105	741	170690											
SEL1L2	80343	broad.mit.edu	37	chr20	13868725	13868725	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaactcaaaccaagtattcCatttttattcctagctccat	3	11	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13868725	A	A	13868725	1	1	225	0	1	0	0	0	0	0	0	0	14124	609	21	2		2	SEL1L2	20	13868725	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	5170310	13868725	49156795	742	170691											
C20orf26	26074	broad.mit.edu	37	chr20	20340915	20340915	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagatgaggaaatcaaccCgactgagaagcccaggcaat	11	9	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20340915	A	A	20340915	3	1	225	1	0	0	0	0	1	0	0	0	2128	652	23	1	3709	1	C20orf26	20	20340915	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	6472190	20340915	42684605	743	170692											
DUSP15	128853	broad.mit.edu	37	chr20	30436163	30436163	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctatgggcttagtgtgggCagggttgggtgggagtaggg	22	3	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30436163	A	A	30436163	1	1	225	0	1	0	0	0	0	0	0	0	4855	725	25	3		3	DUSP15	20	30436163	3'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	10095248	30436163	32589357	744	170693											
MYH7B	57644	broad.mit.edu	37	chr20	33578063	33578063	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cccccaagtctggggtgaaaGagaagcgtaagaaggcagca	14	9	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33578063	C	C	33578063	3	2	225	1	0	0	0	0	1	0	0	0	10134	943	33	4	2131	4	MYH7B	20	33578063	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3141900	33578063	29447457	745	170694											
PHF20	51230	broad.mit.edu	37	chr20	34487550	34487550	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccctgaccaggaagcGggtctctgccagttccccaa	12	14	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34487550	T	T	34487550	3	4	225	1	0	0	0	0	1	0	0	0	11926	1116	39	1	1575	1	PHF20	20	34487550	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	909487	34487550	28537970	746	170695											
DLGAP4	22839	broad.mit.edu	37	chr20	35060507	35060507	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caatttccccgtggcgaggcCaaggcccgtggtgagagccc	14	14	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35060507	T	T	35060507	2	4	225	1	0	0	0	0	0	0	0	1	4602	581	21	4		4	DLGAP4	20	35060507	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	572957	35060507	27965013	747	170696											
DLGAP4	22839	broad.mit.edu	37	chr20	35071266	35071266	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgagtggtcccagcaccCggcccaggctggtacaagca	12	15	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35071266	A	A	35071266	1	1	225	0	1	0	0	0	0	0	0	0	4602	667	23	1		1	DLGAP4	20	35071266	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	10759	35071266	27954254	748	170697											
RBL1	5933	broad.mit.edu	37	chr20	35627148	35627148	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtgcttttatcatagAaacaagaacaacattaatga	6	5	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35627148	T	T	35627148	1	4	225	0	1	0	0	0	0	0	0	0	13217	261	9	5		5	RBL1	20	35627148	3'UTR	SNP	A	TCGA-91-6828-01A-11D-1855-08	555882	35627148	27398372	749	170698											
PPP1R16B	26051	broad.mit.edu	37	chr20	37547132	37547132	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcagcatggccaggacGggcgagagtagcagtgaagg	19	8	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37547132	T	T	37547132	2	4	225	1	0	0	0	0	0	0	0	1	12467	1103	39	1		1	PPP1R16B	20	37547132	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	1919984	37547132	25478388	750	170699											
MATN4	8785	broad.mit.edu	37	chr20	43929581	43929581	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctcggggcacaggcagcGgtaggagaggccctcgctca	15	15	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43929581	A	A	43929581	3	1	225	1	0	0	0	0	1	0	0	0	9428	1116	39	4	807	4	MATN4	20	43929581	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	6382449	43929581	19095939	751	170700											
CASS4	57091	broad.mit.edu	37	chr20	55027049	55027050	+	Missense_Mutation	DNP	CC	AA	AA													aatcaaggccccacgctctcCccagttccagctccactttc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	55027050	AA	AA	55027049	3	1	225	1	0	0	0	0	1	0	0	0	2709	623	22	2	835	2	CASS4	20	55027049	Missense_Mutation	DNP	CC	TCGA-91-6828-01A-11D-1855-08	11097468	55027049	7998471	752	170701											
RAB22A	57403	broad.mit.edu	37	chr20	56886196	56886196	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agggtaagagacttttatttGatacacatctaaaggtgcat	9	5	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56886196	C	C	56886196	1	2	225	0	1	0	0	0	0	0	0	0	13017	1305	45	4		4	RAB22A	20	56886196	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	1859147	56886196	6139324	753	170702											
EDN3	1908	broad.mit.edu	37	chr20	57876513	57876513	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctggcaggcgcggcgtgtCccaggcccccactgcagcca	14	17	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57876513	T	T	57876513	3	4	225	1	0	0	0	0	1	0	0	0	4958	855	30	4	107	4	EDN3	20	57876513	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	990317	57876513	5149007	754	170703											
SYCP2	10388	broad.mit.edu	37	chr20	58496354	58496354	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taacaatcattcagcaaaaaTgaatatttaccctgcatata	3	8	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58496354	A	A	58496354	1	1	225	0	1	0	0	0	0	0	0	0	15551	1479	51	5		5	SYCP2	20	58496354	Intron	SNP	T	TCGA-91-6828-01A-11D-1855-08	619841	58496354	4529166	755	170704											
C20orf20	55257	broad.mit.edu	37	chr20	61430747	61430747	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatttttttaactgaacaGgaagacaaaaataagattct	6	5	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61430747	A	A	61430747	1	1	225	0	1	0	0	0	0	0	0	0	2125	1015	35	4		4	C20orf20	20	61430747	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2934393	61430747	1594773	756	170705											
C20orf20	55257	broad.mit.edu	37	chr20	61430850	61430850	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggggaaagcatcagaaaaatCcagcaaagacaaagagaaga	11	6	1	4			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61430850	G	G	61430850	3	3	225	1	0	0	0	0	1	0	0	0	2125	855	30	4	488	4	C20orf20	20	61430850	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	103	61430850	1594670	757	170706											
COL9A3	1299	broad.mit.edu	37	chr20	61460173	61460173	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactcgatggccagaaggttGgcatggggctcagggtgtga	18	7	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61460173	A	A	61460173	1	1	225	0	1	0	0	0	0	0	0	0	3741	1363	47	4		4	COL9A3	20	61460173	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	29323	61460173	1565347	758	170707											
BIRC7	79444	broad.mit.edu	37	chr20	61867807	61867807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccacacaggtcagtcccGggcgggggggccttcctgcc	14	16	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61867807	T	T	61867807	1	4	225	0	1	0	0	0	0	0	0	0	1445	1131	39	1		1	BIRC7	20	61867807	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	407634	61867807	1157713	759	170708											
PRIC285	85441	broad.mit.edu	37	chr20	62190932	62190933	+	Intron	INS	-	T	T													gagtcagggtcaggtgggagINSgagtcagggtcaggtgggag							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62190933	T	T	62190932	6	5	225	0	1	1	1	0	0	0	0	0	12591	1015	35	0		0	PRIC285	20	62190932	Intron	INS	-	TCGA-91-6828-01A-11D-1855-08	323125	62190932	834588	760	170709											
TPTE	7179	broad.mit.edu	37	chr21	10908861	10908861	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatgtgtgcaaccagaagTaaaatgagcaattgtcatag	10	5	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10908861	C	C	10908861	3	2	225	1	0	0	0	0	1	0	0	0	16554	1638	57	5	179	5	TPTE	21	10908861	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08		10908861	37221034	761	170710											
TPTE	7179	broad.mit.edu	37	chr21	10998192	10998192	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatattgaaatgtctaCctcaggcactatacctggtc	8	9	2	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10998192	A	A	10998192	1	1	225	0	1	0	0	0	0	0	0	0	16554	522	18	3		3	TPTE	21	10998192	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	89331	10998192	37131703	762	170711											
BAGE2	85319	broad.mit.edu	37	chr21	11038784	11038784	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagtaatagctggtttacCcatgccagttttttggagtg	10	7	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11038784	A	A	11038784	1	1	225	0	1	0	0	0	0	0	0	0	1297	638	22	2		2	BAGE2	21	11038784	3'UTR	SNP	C	TCGA-91-6828-01A-11D-1855-08	40592	11038784	37091111	763	170712											
NRIP1	8204	broad.mit.edu	37	chr21	16339433	16339433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagtgagttcttataacCtgcatttttaggggaagaag	10	6	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16339433	A	A	16339433	3	1	225	1	0	0	0	0	1	0	0	0	10747	681	24	2	2399	2	NRIP1	21	16339433	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	5300649	16339433	31790462	764	170713											
TMPRSS15	5651	broad.mit.edu	37	chr21	19687463	19687463	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaaaaataagacatacCacaatctgcttcatctgagc	4	11	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19687463	A	A	19687463	3	1	225	1	0	0	0	0	1	0	0	0	16369	608	21	2	1063	2	TMPRSS15	21	19687463	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	3348030	19687463	28442432	765	170714											
APP	351	broad.mit.edu	37	chr21	27327958	27327958	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctgggaccggatctgagCggctttcttgggatccacca	12	12	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27327958	A	A	27327958	3	1	225	1	0	0	0	0	1	0	0	0	817	768	27	3	770	3	APP	21	27327958	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	7640495	27327958	20801937	766	170715											
TIAM1	7074	broad.mit.edu	37	chr21	32559330	32559330	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacttacctttcttggaagcTaaaccggtttccttcacact	6	12	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32559330	A	A	32559330	3	1	225	1	0	0	0	0	1	0	0	0	16013	1519	53	5	2186	5	TIAM1	21	32559330	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	5231372	32559330	15570565	767	170716											
DOPEY2	9980	broad.mit.edu	37	chr21	37623551	37623551	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgttgcggcagtgtggagcaGaaagaaagcccagcgtcaca	14	9	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37623551	C	C	37623551	3	2	225	1	0	0	0	0	1	0	0	0	4748	942	33	4	5172	4	DOPEY2	21	37623551	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	5064221	37623551	10506344	768	170717											
DOPEY2	9980	broad.mit.edu	37	chr21	37623695	37623695	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcatgggaaactattgagttGatttaatcattttatcttat	7	4	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37623695	C	C	37623695	1	2	225	0	1	0	0	0	0	0	0	0	4748	1305	45	4		4	DOPEY2	21	37623695	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	144	37623695	10506200	769	170718											
UMODL1	89766	broad.mit.edu	37	chr21	43505456	43505456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccatactggtgaaaatGgacttcaaggaactccagca	9	10	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43505456	T	T	43505456	3	4	225	1	0	0	0	0	1	0	0	0	17106	1348	47	2	551	2	UMODL1	21	43505456	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	5881761	43505456	4624439	770	170719											
ITGB2	3689	broad.mit.edu	37	chr21	46330175	46330175	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaggagctgggcaggtgGggaggggtccaggaggcact	20	9	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46330175	T	T	46330175	1	4	225	0	1	0	0	0	0	0	0	0	7964	1247	43	2		2	ITGB2	21	46330175	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2824719	46330175	1799720	771	170720											
PRMT2	3275	broad.mit.edu	37	chr21	48064292	48064292	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtggggtgagcgtgcGggctgctgtgggtacattcc	20	7	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48064292	T	T	48064292	2	4	225	1	0	0	0	0	0	0	0	1	12643	1103	39	1		1	PRMT2	21	48064292	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	1734117	48064292	65603	772	170721											
CECR1	51816	broad.mit.edu	37	chr22	17690179	17690179	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagcaacagccacaagcacAgtaatagccccaagatgagt	8	11	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17690179	T	T	17690179	1	4	225	0	1	0	0	0	0	0	0	0	3235	203	7	5		5	CECR1	22	17690179	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08		17690179	33614387	773	170722											
MICAL3	57553	broad.mit.edu	37	chr22	18301725	18301725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccctggtgagacaggagtCctagcttctggcagggtcac	13	12	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18301725	A	A	18301725	3	1	225	1	0	0	0	0	1	0	0	0	9664	854	30	3	2334	3	MICAL3	22	18301725	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	611546	18301725	33002841	774	170723											
MICAL3	57553	broad.mit.edu	37	chr22	18463458	18463458	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccttcatgcaacctacaacGagcagctgtgcactccagcc	7	17	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18463458	T	T	18463458	1	4	225	0	1	0	0	0	0	0	0	0	9664	1073	37	3		3	MICAL3	22	18463458	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	161733	18463458	32841108	775	170724											
DGCR6L	85359	broad.mit.edu	37	chr22	20307370	20307371	+	Intron	DNP	TC	AA	AA													cggcgggaaacgaagccgccTccgcaggcctccgcccgccc							TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	20307371	AA	AA	20307370	1	1	225	0	1	0	0	0	0	0	0	0	4503	1566	54	5		5	DGCR6L	22	20307370	Intron	DNP	TC	TCGA-91-6828-01A-11D-1855-08	1843912	20307370	30997196	776	170725											
NEFH	4744	broad.mit.edu	37	chr22	29881765	29881765	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaccaagtgggagatggcCgcccagctgcgagaatacca	12	12	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29881765	A	A	29881765	2	1	225	1	0	0	0	0	0	0	0	1	10409	639	23	1		1	NEFH	22	29881765	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	9574395	29881765	21422801	777	170726											
TBC1D10A	83874	broad.mit.edu	37	chr22	30688782	30688782	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggtctcctgccagcgcCgcagctgaatgaggtgttcg	14	14	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30688782	A	A	30688782	3	1	225	1	0	0	0	0	1	0	0	0	15717	652	23	1	421	1	TBC1D10A	22	30688782	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	807017	30688782	20615784	778	170727											
FBXO7	25793	broad.mit.edu	37	chr22	32883842	32883842	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacattatttaacttttgGggtgaaactctgtgaaattc	7	6	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32883842	T	T	32883842	1	4	225	0	1	0	0	0	0	0	0	0	5817	1247	43	2		2	FBXO7	22	32883842	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	2195060	32883842	18420724	779	170728											
CSF2RB	1439	broad.mit.edu	37	chr22	37325396	37325396	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccatgcaggccctgactgCcccccagcggtccagccctt	11	19	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37325396	A	A	37325396	1	1	225	0	1	0	0	0	0	0	0	0	3969	754	26	3		3	CSF2RB	22	37325396	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	4441554	37325396	13979170	780	170729											
CSF2RB	1439	broad.mit.edu	37	chr22	37333578	37333578	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccaggcccgcctgccgcCtcccacacacctgagaaaca	8	20	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37333578	A	A	37333578	2	1	225	1	0	0	0	0	0	0	0	1	3969	668	24	2		2	CSF2RB	22	37333578	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	8182	37333578	13970988	781	170730											
TMEM184B	25829	broad.mit.edu	37	chr22	38620938	38620938	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaccgacacgcgggccgagTggattttggggatggcccca	15	13	0	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38620938	A	A	38620938	3	1	225	1	0	0	0	0	1	0	0	0	16228	1696	59	5	395	5	TMEM184B	22	38620938	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	1287360	38620938	12683628	782	170731											
APOBEC3A	200315	broad.mit.edu	37	chr22	39358206	39358206	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgagtgggaggctgcgGgccattctccaggtgagggc	18	11	1	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39358206	T	T	39358206	2	4	225	1	0	0	0	0	0	0	0	1	791	1219	43	2		2	APOBEC3A	22	39358206	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08	737268	39358206	11946360	783	170732											
CACNA1I	8911	broad.mit.edu	37	chr22	40054017	40054017	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggccctcggggccttgtGcatggggcagtggggagacg	21	9	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40054017	T	T	40054017	1	4	225	0	1	0	0	0	0	0	0	0	2572	1334	46	3		3	CACNA1I	22	40054017	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	695811	40054017	11250549	784	170733											
TNRC6B	23112	broad.mit.edu	37	chr22	40661419	40661419	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggagaataagggaatgccCtttggaatgggcttggggaa	16	4	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40661419	T	T	40661419	2	4	225	1	0	0	0	0	0	0	0	1	16464	668	24	4		4	TNRC6B	22	40661419	Silent	SNP	C	TCGA-91-6828-01A-11D-1855-08	607402	40661419	10643147	785	170734											
NUP50	10762	broad.mit.edu	37	chr22	45580508	45580508	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgcagacgagttgcacaAaattttactggagaaaaagg	12	5	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45580508	G	G	45580508	3	3	225	1	0	0	0	0	1	0	0	0	10861	14	1	5	1405	5	NUP50	22	45580508	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	4919089	45580508	5724058	786	170735											
FBLN1	2192	broad.mit.edu	37	chr22	45958668	45958668	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtgcccttcgtgttggctGaatcggccagaggggcggcg	18	10	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45958668	T	T	45958668	1	4	225	0	1	0	0	0	0	0	0	0	5755	1305	45	3		3	FBLN1	22	45958668	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	378160	45958668	5345898	787	170736											
SHANK3	85358	broad.mit.edu	37	chr22	51117091	51117091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctgttggacaaggggctgGaccccaacttccatgaccct	11	14	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51117091	T	T	51117091	3	4	225	1	0	0	0	0	1	0	0	0	14379	1174	41	3	432	3	SHANK3	22	51117091	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	5158423	51117091	187475	788	170737											
ARHGAP6	395	broad.mit.edu	37	chrX	11187696	11187696	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtgctctcctcagcccGggctgaactctgaactgaga	12	14	3	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11187696	T	T	11187696	2	4	225	1	0	0	0	0	0	0	0	1	889	1115	39	1		1	ARHGAP6	23	11187696	Silent	SNP	G	TCGA-91-6828-01A-11D-1855-08		11187696	144082864	789	170738											
CNKSR2	22866	broad.mit.edu	37	chrX	21670371	21670371	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctattaactttttattttaaActtgaataaaactttgtccc	2	7	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21670371	T	T	21670371	1	4	225	0	1	0	0	0	0	0	0	0	3639	58	2	5		5	CNKSR2	23	21670371	Intron	SNP	A	TCGA-91-6828-01A-11D-1855-08	10482675	21670371	133600189	790	170739											
DMD	1756	broad.mit.edu	37	chrX	32663166	32663166	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtcctcagcagaaagaAgccacgataatacttcttct	7	10	3	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32663166	C	C	32663166	3	2	225	1	0	0	0	0	1	0	0	0	4620	72	3	5	10516	5	DMD	23	32663166	Missense_Mutation	SNP	A	TCGA-91-6828-01A-11D-1855-08	10992795	32663166	122607394	791	170740											
CXorf22	170063	broad.mit.edu	37	chrX	35974306	35974306	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaagattactggaggggGtatggtggtaagataatttt	16	2	0	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35974306	T	T	35974306	3	4	225	1	0	0	0	0	1	0	0	0	4135	1261	44	3	1433	3	CXorf22	23	35974306	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	3311140	35974306	119296254	792	170741											
RBM10	8241	broad.mit.edu	37	chrX	47028898	47028898	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggagcagagtgcggagGtgaggagggggcgcgctgcg	23	7	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47028898	T	T	47028898	5	4	225	1	0	0	0	0	0	0	1	0	13219	1275	44	3	208	3	RBM10	23	47028898	Splice_Site	SNP	G	TCGA-91-6828-01A-11D-1855-08	11054592	47028898	108241662	793	170742											
DGKK	139189	broad.mit.edu	37	chrX	50112015	50112015	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtctgcggtgccataaaTtgccttcagaggaaaaaaaa	10	7	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50112015	C	C	50112015	3	2	225	1	0	0	0	0	1	0	0	0	4512	1493	52	5	79	5	DGKK	23	50112015	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	3083117	50112015	105158545	794	170743											
OTUD6A	139562	broad.mit.edu	37	chrX	69282531	69282531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacgtggcccgcatggagGccgagatggctcagaagcac	15	11	1	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69282531	T	T	69282531	3	4	225	1	0	0	0	0	1	0	0	0	11410	1203	42	3	159	3	OTUD6A	23	69282531	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	19170516	69282531	85988029	795	170744											
CXorf26	51260	broad.mit.edu	37	chrX	75396788	75396788	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtactttgctgcgactaGattgttctcagggctacact	10	9	1	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75396788	T	T	75396788	3	4	225	1	0	0	0	0	1	0	0	0	4137	942	33	3	388	3	CXorf26	23	75396788	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	6114257	75396788	79873772	796	170745											
DACH2	117154	broad.mit.edu	37	chrX	85415499	85415499	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cggtgatcaatcttttccttCagtacagcaaacttgcatgc	7	11	3	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85415499	T	T	85415499	1	4	225	0	1	0	0	0	0	0	0	0	4254	841	29	4		4	DACH2	23	85415499	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	10018711	85415499	69855061	797	170746											
TNMD	64102	broad.mit.edu	37	chrX	99854659	99854659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggaggacgagtcatctGtcgtgtcatcatgccttgta	11	10	4	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99854659	T	T	99854659	3	4	225	1	0	0	0	0	1	0	0	0	16445	1377	48	3	925	3	TNMD	23	99854659	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	14439160	99854659	55415901	798	170747											
DRP2	1821	broad.mit.edu	37	chrX	100505379	100505379	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccggccattcctgtgtcGgggttggccattcttgacgg	13	12	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100505379	T	T	100505379	1	4	225	0	1	0	0	0	0	0	0	0	4804	1131	39	1		1	DRP2	23	100505379	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08	650720	100505379	54765181	799	170748											
ODZ1	10178	broad.mit.edu	37	chrX	123554295	123554295	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgctgcttatagtcagCcagtatacttgtccgccagg	9	12	1	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123554295	A	A	123554295	3	1	225	1	0	0	0	0	1	0	0	0	10929	740	26	3	3382	3	ODZ1	23	123554295	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	23048916	123554295	31716265	800	170749											
ODZ1	10178	broad.mit.edu	37	chrX	123787580	123787580	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggaatggtctgcatgaCctgtgcaccaatgtcaactt	11	9	2	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123787580	A	A	123787580	3	1	225	1	0	0	0	0	1	0	0	0	10929	507	18	3	7080	3	ODZ1	23	123787580	Missense_Mutation	SNP	C	TCGA-91-6828-01A-11D-1855-08	233285	123787580	31482980	801	170750											
PASD1	139135	broad.mit.edu	37	chrX	150828215	150828215	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atattgcagaggttgagcagTatggaccacaagaaaacgtt	11	6	0	3			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150828215	G	G	150828215	3	3	225	1	0	0	0	0	1	0	0	0	11565	1638	57	5	782	5	PASD1	23	150828215	Missense_Mutation	SNP	T	TCGA-91-6828-01A-11D-1855-08	27040635	150828215	4442345	802	170751											
GABRA3	2556	broad.mit.edu	37	chrX	151336851	151336851	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggtcttggtctcagtcGggctgtcctgcacgtaggtg	15	9	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151336851	T	T	151336851	3	4	225	1	0	0	0	0	1	0	0	0	6222	1116	39	1	154	1	GABRA3	23	151336851	Missense_Mutation	SNP	G	TCGA-91-6828-01A-11D-1855-08	508636	151336851	3933709	803	170752											
L1CAM	3897	broad.mit.edu	37	chrX	153132495	153132495	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccccaggcagctcagcCcagggactctcaccttccac	8	19	2	0			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153132495	A	A	153132495	1	1	225	0	1	0	0	0	0	0	0	0	8660	638	22	2		2	L1CAM	23	153132495	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	1795644	153132495	2138065	804	170753											
IL9R	3581	broad.mit.edu	37	chrX	155234299	155234299	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccagggtagactccccaCtctacatagggagatgtcaa	10	11	2	2			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155234299	A	A	155234299	1	1	225	0	1	0	0	0	0	0	0	0	7778	580	20	3		3	IL9R	23	155234299	Intron	SNP	C	TCGA-91-6828-01A-11D-1855-08	2101804	155234299	36261	805	170754											
UTY	7404	broad.mit.edu	37	chrY	15398480	15398480	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggtgcgggagctatggGgcccagggattgtgtttgaa	18	7	0	1			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15398480	A	A	15398480	1	1	225	0	1	0	0	0	0	0	0	0	17234	1247	43	4		4	UTY	24	15398480	Intron	SNP	G	TCGA-91-6828-01A-11D-1855-08		15398480	43975086	806	170755											
KIAA1751	85452	broad.mit.edu	37	chr1	1903573	1903573	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcgcccaggctggtgtGcagtggtgcgatcacagctc	14	12	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1903573	T	T	1903573	1	4	226	0	1	0	0	0	0	0	0	0	8326	1334	46	3		3	KIAA1751	1	1903573	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08		1903573	247347048	1	170756											
LRRC47	57470	broad.mit.edu	37	chr1	3712397	3712397	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gggctactccaaggccccatCccgccccgcccgggcagccc	11	22	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3712397	T	T	3712397	1	4	226	0	1	0	0	0	0	0	0	0	9091	870	30	4		4	LRRC47	1	3712397	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1808824	3712397	245538224	2	170757											
CHD5	26038	broad.mit.edu	37	chr1	6185807	6185807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagcagtagcccagacCactaacactgagactcactc	7	16	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6185807	A	A	6185807	1	1	226	0	1	0	0	0	0	0	0	0	3359	609	21	2		2	CHD5	1	6185807	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2473410	6185807	243064814	3	170758											
TAS1R1	80835	broad.mit.edu	37	chr1	6639736	6639736	+	3'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tccgggaggtctttgggcatCgcggtctggggttgggacgt	19	8	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6639736	T	T	6639736	1	4	226	0	1	0	0	0	0	0	0	0	15681	899	31	4		4	TAS1R1	1	6639736	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	453929	6639736	242610885	4	170759											
TNFRSF9	3604	broad.mit.edu	37	chr1	7993221	7993221	+	Splice_Site	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atatgattatgttaatcttaCgttgtttgaatatatacagg	7	3	1	2	rs139075597		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7993221	G	G	7993221	5	3	226	1	0	0	0	0	0	0	1	0	16423	550	19	4	95	4	TNFRSF9	1	7993221	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	1353485	7993221	241257400	5	170760											
RERE	473	broad.mit.edu	37	chr1	8415633	8415633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggggggtgggatggcccCaggcaggtcacgggggtagg	22	8	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8415633	A	A	8415633	3	1	226	1	0	0	0	0	1	0	0	0	13339	594	21	2	195	2	RERE	1	8415633	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	422412	8415633	240834988	6	170761											
MTOR	2475	broad.mit.edu	37	chr1	11297961	11297961	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttcatgctactgagtcggCccacagtgcagatggccagc	13	12	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11297961	T	T	11297961	3	4	226	1	0	0	0	0	1	0	0	0	10048	739	26	4	5686	4	MTOR	1	11297961	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2882328	11297961	237952660	7	170762											
PLOD1	5351	broad.mit.edu	37	chr1	12024007	12024007	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gataccccaggttctgatagAgaaggtgtcctgccctgtct	11	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12024007	T	T	12024007	1	4	226	0	1	0	0	0	0	0	0	0	12196	319	11	5		5	PLOD1	1	12024007	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	726046	12024007	237226614	8	170763											
CELA2B	51032	broad.mit.edu	37	chr1	15812333	15812333	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggggaaatccagtaggggtCcaccacttcctttttctcag	10	11	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15812333	T	T	15812333	1	4	226	0	1	0	0	0	0	0	0	0	3242	870	30	4		4	CELA2B	1	15812333	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3788326	15812333	233438288	9	170764											
NBPF1	55672	broad.mit.edu	37	chr1	16893822	16893822	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcaagacttcaggccctttCtcatccagcagctccctgct	7	16	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16893822	G	G	16893822	3	3	226	1	0	0	0	0	1	0	0	0	10286	912	32	4	753	4	NBPF1	1	16893822	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1081489	16893822	232356799	10	170765											
NBPF1	55672	broad.mit.edu	37	chr1	16918201	16918201	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtcttccaactttaacAaaatgttaaaatacccattt	2	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16918201	C	C	16918201	1	2	226	0	1	0	0	0	0	0	0	0	10286	145	5	5		5	NBPF1	1	16918201	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	24379	16918201	232332420	11	170766											
PADI1	29943	broad.mit.edu	37	chr1	17556725	17556725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggagctgggggcagctcgGgaagcctgcagcctggcttg	19	10	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17556725	T	T	17556725	1	4	226	0	1	0	0	0	0	0	0	0	11471	1247	43	2		2	PADI1	1	17556725	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	638524	17556725	231693896	12	170767											
UBR4	23352	broad.mit.edu	37	chr1	19455381	19455381	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggcctaacaccaaacgaAggcttccaggtcctctggaa	10	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19455381	G	G	19455381	1	3	226	0	1	0	0	0	0	0	0	0	17030	87	3	5		5	UBR4	1	19455381	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1898656	19455381	229795240	13	170768											
UBR4	23352	broad.mit.edu	37	chr1	19482030	19482030	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataagctgagtatagatgtAcccagccgaagacattataa	8	8	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19482030	C	C	19482030	3	2	226	1	0	0	0	0	1	0	0	0	17030	391	14	5	9602	5	UBR4	1	19482030	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	26649	19482030	229768591	14	170769											
HSPG2	3339	broad.mit.edu	37	chr1	22183691	22183691	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggtataggctggggactGcagggcaaggcgaaaggggg	21	6	0	0	rs111323019		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22183691	A	A	22183691	1	1	226	0	1	0	0	0	0	0	0	0	7500	1334	46	4		4	HSPG2	1	22183691	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2701661	22183691	227066930	15	170770											
CELA3A	10136	broad.mit.edu	37	chr1	22333950	22333950	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggtggaactggtgggGttccaccgtgaagaaaacca	13	10	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22333950	T	T	22333950	3	4	226	1	0	0	0	0	1	0	0	0	3243	1261	44	3	606	3	CELA3A	1	22333950	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	150259	22333950	226916671	16	170771											
NIPAL3	57185	broad.mit.edu	37	chr1	24786969	24786969	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctatgatttgctgctgcAggtgcaatattttacctgga	9	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24786969	G	G	24786969	5	3	226	1	0	0	0	0	0	0	1	0	10521	202	7	5	895	5	NIPAL3	1	24786969	Splice_Site	SNP	A	TCGA-91-6829-01A-21D-1855-08	2453019	24786969	224463652	17	170772											
SYF2	25949	broad.mit.edu	37	chr1	25555610	25555610	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatttaatttacgagctTcattctaaaaccgtaacaca	6	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25555610	G	G	25555610	3	3	226	1	0	0	0	0	1	0	0	0	15556	1783	62	5	614	5	SYF2	1	25555610	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	768641	25555610	223695011	18	170773											
EXTL1	2134	broad.mit.edu	37	chr1	26356821	26356822	+	Intron	INS	-	T	T													gtgtgacccctgaatgcttcINStttttttttttttttttttt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26356822	T	T	26356821	6	5	226	0	1	1	1	0	0	0	0	0	5368	928	32	0		0	EXTL1	1	26356821	Intron	INS	-	TCGA-91-6829-01A-21D-1855-08	801211	26356821	222893800	19	170774											
CATSPER4	378807	broad.mit.edu	37	chr1	26526372	26526372	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcccctgcctgccatctgCaggacagagaagagggaata	14	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26526372	T	T	26526372	1	4	226	0	1	0	0	0	0	0	0	0	2716	725	25	4		4	CATSPER4	1	26526372	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	169551	26526372	222724249	20	170775											
IFI6	2537	broad.mit.edu	37	chr1	27994737	27994737	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggccccgcactcacCgaggctctgcagcgtggcca	13	18	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27994737	G	G	27994737	3	3	226	1	0	0	0	0	1	0	0	0	7589	666	23	4	102	4	IFI6	1	27994737	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1468365	27994737	221255884	21	170776											
PTPRU	10076	broad.mit.edu	37	chr1	29587414	29587414	+	Silent	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagccgcaccaaatgcgcAggtgggtgcagcagctaccc	12	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29587414	C	C	29587414	2	2	226	1	0	0	0	0	0	0	0	1	12921	202	7	5		5	PTPRU	1	29587414	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	1592677	29587414	219663207	22	170777											
PUM1	9698	broad.mit.edu	37	chr1	31532281	31532281	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctggttgtggctgcgcttGcgaccctgttccagatgtca	13	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31532281	C	C	31532281	3	2	226	1	0	0	0	0	1	0	0	0	12933	1328	46	4	3517	4	PUM1	1	31532281	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1944867	31532281	217718340	23	170778											
MARCKSL1	65108	broad.mit.edu	37	chr1	32800178	32800178	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttttgcagcttagagatcAcccacctgcccctacctagc	7	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32800178	G	G	32800178	1	3	226	0	1	0	0	0	0	0	0	0	9402	174	6	5		5	MARCKSL1	1	32800178	3'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	1267897	32800178	216450443	24	170779											
ZNF362	149076	broad.mit.edu	37	chr1	33760575	33760575	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaccctacaagtgcccacatCctggctgcgagaaggctttc	10	14	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33760575	T	T	33760575	3	4	226	1	0	0	0	0	1	0	0	0	17994	855	30	4	968	4	ZNF362	1	33760575	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	960397	33760575	215490046	25	170780											
CSMD2	114784	broad.mit.edu	37	chr1	34090212	34090212	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggacaggatggtgccCctgcgctctgtgaggttgcc	16	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34090212	T	T	34090212	2	4	226	1	0	0	0	0	0	0	0	1	3979	622	22	4		4	CSMD2	1	34090212	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	329637	34090212	215160409	26	170781											
CSMD2	114784	broad.mit.edu	37	chr1	34158385	34158385	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttctagattttctaaggCatccagtatagcaaccacta	5	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34158385	T	T	34158385	1	4	226	0	1	0	0	0	0	0	0	0	3979	725	25	4		4	CSMD2	1	34158385	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	68173	34158385	215092236	27	170782											
CSMD2	114784	broad.mit.edu	37	chr1	34192017	34192017	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccccacccagggcaatttgGtccagtgttctccaaccttg	9	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34192017	C	C	34192017	1	2	226	0	1	0	0	0	0	0	0	0	3979	1276	44	4		4	CSMD2	1	34192017	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	33632	34192017	215058604	28	170783											
C1orf94	84970	broad.mit.edu	37	chr1	34666336	34666336	+	Intron	DEL	T	-	-													ccagcatccagcacttggccTtccagaggcattgactcagt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34666336	-	-	34666336	6	5	226	0	1	1	0	1	0	0	0	0	2093	1624	56	0		0	C1orf94	1	34666336	Intron	DEL	T	TCGA-91-6829-01A-21D-1855-08	474319	34666336	214584285	29	170784											
EIF2C1	26523	broad.mit.edu	37	chr1	36384872	36384872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtgaggcctgggatcaGgttggcctcctttttgcttc	13	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36384872	T	T	36384872	1	4	226	0	1	0	0	0	0	0	0	0	5045	1015	35	2		2	EIF2C1	1	36384872	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1718536	36384872	212865749	30	170785											
MAP7D1	55700	broad.mit.edu	37	chr1	36641784	36641784	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggtgaccggcttcgcctGgccttctacccccagatcgc	10	18	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36641784	T	T	36641784	1	4	226	0	1	0	0	0	0	0	0	0	9359	1363	47	2		2	MAP7D1	1	36641784	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	256912	36641784	212608837	31	170786											
MRPS15	64960	broad.mit.edu	37	chr1	36921783	36921783	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaaagccgcaattctgactCgtacccgaatgcacagagcc	9	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36921783	A	A	36921783	1	1	226	0	1	0	0	0	0	0	0	0	9919	899	31	3		3	MRPS15	1	36921783	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	279999	36921783	212328838	32	170787											
GRIK3	2899	broad.mit.edu	37	chr1	37356572	37356572	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaatcctctgtatgtcatAggtcaaggttgtgttgggca	13	6	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37356572	T	T	37356572	3	4	226	1	0	0	0	0	1	0	0	0	6841	420	15	5	2578	5	GRIK3	1	37356572	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	434789	37356572	211894049	33	170788											
INPP5B	3633	broad.mit.edu	37	chr1	38352397	38352397	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtagttcactaaaacagtTtctaaatagtttgctcgact	7	7	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38352397	C	C	38352397	1	2	226	0	1	0	0	0	0	0	0	0	7825	1856	64	5		5	INPP5B	1	38352397	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	995825	38352397	210898224	34	170789											
KCNQ4	9132	broad.mit.edu	37	chr1	41303297	41303297	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgtggaagggagggacGgcgtgtccccgggccctctg	17	11	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41303297	T	T	41303297	1	4	226	0	1	0	0	0	0	0	0	0	8155	1131	39	1		1	KCNQ4	1	41303297	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2950900	41303297	207947324	35	170790											
CTPS	1503	broad.mit.edu	37	chr1	41474345	41474345	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccagggaaactctatggaGacgcagactacttggaagag	13	8	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41474345	A	A	41474345	3	1	226	1	0	0	0	0	1	0	0	0	4056	942	33	4	1462	4	CTPS	1	41474345	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	171048	41474345	207776276	36	170791											
SCMH1	22955	broad.mit.edu	37	chr1	41502888	41502888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attacctcccaggtgcaaggCcaggcacaagagtaagtcca	10	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41502888	A	A	41502888	1	1	226	0	1	0	0	0	0	0	0	0	14021	754	26	3		3	SCMH1	1	41502888	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	28543	41502888	207747733	37	170792											
C1orf210	149466	broad.mit.edu	37	chr1	43748350	43748350	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccatccctggccaaccttTaagccccagccacctctgtc	5	20	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43748350	G	G	43748350	1	3	226	0	1	0	0	0	0	0	0	0	2050	1769	61	5		5	C1orf210	1	43748350	3'UTR	SNP	T	TCGA-91-6829-01A-21D-1855-08	2245462	43748350	205502271	38	170793											
KIAA0467	23334	broad.mit.edu	37	chr1	43890055	43890055	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccgtcaggactggcccCtgcgctgcctctcagtgcca	11	17	2	0	rs884257		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43890055	T	T	43890055	1	4	226	0	1	0	0	0	0	0	0	0	8248	696	24	4		4	KIAA0467	1	43890055	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	141705	43890055	205360566	39	170794											
KIAA0467	23334	broad.mit.edu	37	chr1	43896082	43896082	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgggcaagtgagtcaaGgtggggaaggctggctgctt	18	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43896082	T	T	43896082	1	4	226	0	1	0	0	0	0	0	0	0	8248	1015	35	2		2	KIAA0467	1	43896082	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6027	43896082	205354539	40	170795											
IPO13	9670	broad.mit.edu	37	chr1	44425990	44425990	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaatggttgaatgatgccCaggttgtggaggtgagccct	15	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44425990	A	A	44425990	3	1	226	1	0	0	0	0	1	0	0	0	7864	595	21	2	2144	2	IPO13	1	44425990	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	529908	44425990	204824631	41	170796											
KLF17	128209	broad.mit.edu	37	chr1	44569891	44569891	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattctccatctctgtacgCttattgatctcatcctcgta	5	12	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44569891	A	A	44569891	1	1	226	0	1	0	0	0	0	0	0	0	8416	812	28	3		3	KLF17	1	44569891	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	143901	44569891	204680730	42	170797											
ZSWIM5	57643	broad.mit.edu	37	chr1	45506070	45506070	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctaattactatacctttctTctgatgcttgtagatttcca	4	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45506070	A	A	45506070	4	1	226	1	0	0	0	0	0	1	0	0	18373	1792	62	5	1839	5	ZSWIM5	1	45506070	Nonsense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	936179	45506070	203744551	43	170798											
CYP4A11	1579	broad.mit.edu	37	chr1	47395733	47395733	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaaacaggatatgggcagAcaggaaggggacagaagcgg	17	5	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47395733	T	T	47395733	1	4	226	0	1	0	0	0	0	0	0	0	4216	290	10	5		5	CYP4A11	1	47395733	3'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	1889663	47395733	201854888	44	170799											
STIL	6491	broad.mit.edu	37	chr1	47746387	47746387	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaagttccattggtcttccTgaattatggggtgaaaaaac	10	6	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47746387	A	A	47746387	2	1	226	1	0	0	0	0	0	0	0	1	15400	1567	55	5		5	STIL	1	47746387	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	350654	47746387	201504234	45	170800											
NRD1	4898	broad.mit.edu	37	chr1	52260317	52260317	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgggtcactgaggcaccCaaaaactataagaagctagg	11	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52260317	A	A	52260317	1	1	226	0	1	0	0	0	0	0	0	0	10740	609	21	2		2	NRD1	1	52260317	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4513930	52260317	196990304	46	170801											
C1orf168	199920	broad.mit.edu	37	chr1	57202734	57202734	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgggtcaaatatcagcaggGatgaccaataaggtaaatta	10	5	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57202734	T	T	57202734	1	4	226	0	1	0	0	0	0	0	0	0	2032	1189	41	3		3	C1orf168	1	57202734	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	4942417	57202734	192047887	47	170802											
DAB1	1600	broad.mit.edu	37	chr1	57480745	57480745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcggaggctgggccatctGgaaatccttaaacgtttctt	13	9	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57480745	T	T	57480745	3	4	226	1	0	0	0	0	1	0	0	0	4250	1357	47	2	424	2	DAB1	1	57480745	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	278011	57480745	191769876	48	170803											
DAB1	1600	broad.mit.edu	37	chr1	57480986	57480986	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggctggccccatgcgatGggctgagcccccggcatcac	13	18	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57480986	A	A	57480986	2	1	226	1	0	0	0	0	0	0	0	1	4250	1335	47	4		4	DAB1	1	57480986	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	241	57480986	191769635	49	170804											
DAB1	1600	broad.mit.edu	37	chr1	57528586	57528586	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgactttttggcacatcatAaacaccttccttcttttggc	5	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57528586	G	G	57528586	3	3	226	1	0	0	0	0	1	0	0	0	4250	362	13	5	997	5	DAB1	1	57528586	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	47600	57528586	191722035	50	170805											
DAB1	1600	broad.mit.edu	37	chr1	57528724	57528724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaagggtgcctgagaatgGccccagggacaagcccatgg	15	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57528724	T	T	57528724	1	4	226	0	1	0	0	0	0	0	0	0	4250	1218	42	3		3	DAB1	1	57528724	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	138	57528724	191721897	51	170806											
DOCK7	85440	broad.mit.edu	37	chr1	63128718	63128719	+	Frame_Shift_Ins	INS	-	A	A													ggtgtgatgggatatattgcINScaacaatattaaggtttttg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63128719	A	A	63128718	7	5	226	1	0	1	1	0	0	0	0	0	4732	739	26	0	6399	0	DOCK7	1	63128718	Frame_Shift_Ins	INS	-	TCGA-91-6829-01A-21D-1855-08	5599994	63128718	186121903	52	170807											
JAK1	3716	broad.mit.edu	37	chr1	65300289	65300289	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaataaggttctgaaagcTtgtccgattggatggttgga	12	5	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65300289	A	A	65300289	3	1	226	1	0	0	0	0	1	0	0	0	8007	1609	56	5	47	5	JAK1	1	65300289	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	2171571	65300289	183950332	53	170808											
DNAJC6	9829	broad.mit.edu	37	chr1	65860568	65860569	+	Intron	INS	-	T	T													acaaataaatatattttcccINSattgttttctaggtgccacc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65860569	T	T	65860568	6	5	226	0	1	1	1	0	0	0	0	0	4693	609	21	0		0	DNAJC6	1	65860568	Intron	INS	-	TCGA-91-6829-01A-21D-1855-08	560279	65860568	183390053	54	170809											
TCTEX1D1	200132	broad.mit.edu	37	chr1	67243129	67243129	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatgtctatgcagtttacCttgagtgattgaaaataaga	8	5	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67243129	T	T	67243129	3	4	226	1	0	0	0	0	1	0	0	0	15841	681	24	4	546	4	TCTEX1D1	1	67243129	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1382561	67243129	182007492	55	170810											
GNG12	55970	broad.mit.edu	37	chr1	68173367	68173367	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttgctgttttgctggaCatcttcaattattgttttta	8	6	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68173367	G	G	68173367	3	3	226	1	0	0	0	0	1	0	0	0	6589	478	17	4	223	4	GNG12	1	68173367	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	930238	68173367	181077254	56	170811											
LRRC7	57554	broad.mit.edu	37	chr1	70291429	70291429	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtttttttcacattttAggtgtacaagaatttccaga	6	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70291429	T	T	70291429	5	4	226	1	0	0	0	0	0	0	1	0	9107	434	15	5	316	5	LRRC7	1	70291429	Splice_Site	SNP	A	TCGA-91-6829-01A-21D-1855-08	2118062	70291429	178959192	57	170812											
AK5	26289	broad.mit.edu	37	chr1	77805970	77805970	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gagggccaaatatatggcagCctccacagaacaaaaggaaa	10	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77805970	G	G	77805970	1	3	226	0	1	0	0	0	0	0	0	0	443	754	26	4		4	AK5	1	77805970	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	7514541	77805970	171444651	58	170813											
ELTD1	64123	broad.mit.edu	37	chr1	79404923	79404923	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatacagacattatctaaatGgcagtttgcattcacatttt	5	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79404923	T	T	79404923	3	4	226	1	0	0	0	0	1	0	0	0	5126	1348	47	2	1774	2	ELTD1	1	79404923	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1598953	79404923	169845698	59	170814											
DNASE2B	58511	broad.mit.edu	37	chr1	84867844	84867844	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcaccagagttttctgttCacccacccaacccccaatcc	3	19	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84867844	A	A	84867844	1	1	226	0	1	0	0	0	0	0	0	0	4705	841	29	3		3	DNASE2B	1	84867844	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	5462921	84867844	164382777	60	170815											
COL24A1	255631	broad.mit.edu	37	chr1	86200648	86200648	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaactccaaactccaaCtaatgtcatagaaatgatat	3	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86200648	A	A	86200648	5	1	226	1	0	0	0	0	0	0	1	0	3715	579	20	3	370	3	COL24A1	1	86200648	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	1332804	86200648	163049973	61	170816											
LPPR4	9890	broad.mit.edu	37	chr1	99762233	99762233	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatatataattcctttatAcctgttggcttaataggtat	7	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99762233	G	G	99762233	1	3	226	0	1	0	0	0	0	0	0	0	9014	406	14	5		5	LPPR4	1	99762233	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	13561585	99762233	149488388	62	170817											
VCAM1	7412	broad.mit.edu	37	chr1	101198042	101198042	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggcagttctgtgaatAtgacatgcttgagccagggc	14	7	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101198042	T	T	101198042	3	4	226	1	0	0	0	0	1	0	0	0	17264	449	16	5	1620	5	VCAM1	1	101198042	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	1435809	101198042	148052579	63	170818											
S1PR1	1901	broad.mit.edu	37	chr1	101704852	101704852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacagctaacctgctcttGtctggggccaccacctacaa	7	15	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101704852	T	T	101704852	3	4	226	1	0	0	0	0	1	0	0	0	13904	1368	48	3	314	3	S1PR1	1	101704852	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	506810	101704852	147545769	64	170819											
VAV3	10451	broad.mit.edu	37	chr1	108116566	108116566	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggcctgtgggctgaaagcTgtaatacagtatagaggctt	14	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108116566	A	A	108116566	1	1	226	0	1	0	0	0	0	0	0	0	17260	1595	55	5		5	VAV3	1	108116566	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	6411714	108116566	141134055	65	170820											
FNDC7	163479	broad.mit.edu	37	chr1	109275651	109275651	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgatcctcctgccttggcCtcccaaagtactcagattat	7	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109275651	A	A	109275651	1	1	226	0	1	0	0	0	0	0	0	0	6031	696	24	2		2	FNDC7	1	109275651	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1159085	109275651	139974970	66	170821											
GPSM2	29899	broad.mit.edu	37	chr1	109446661	109446661	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttctctatattttcttctAgttttaggttcactacattt	3	7	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109446661	C	C	109446661	1	2	226	0	1	0	0	0	0	0	0	0	6801	435	15	5		5	GPSM2	1	109446661	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	171010	109446661	139803960	67	170822											
KIAA1324	57535	broad.mit.edu	37	chr1	109704453	109704453	+	Intron	DEL	G	-	-													catggtgctgggaagtgggtGggaagctgttaatgtttgat							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	109704453	-	-	109704453	6	5	226	0	1	1	0	1	0	0	0	0	8293	1363	47	0		0	KIAA1324	1	109704453	Intron	DEL	G	TCGA-91-6829-01A-21D-1855-08	257792	109704453	139546168	68	170823											
GNAT2	2780	broad.mit.edu	37	chr1	110146652	110146652	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttcttgttgagaaagagGacaatggaagtagccgcaaa	11	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110146652	T	T	110146652	2	4	226	1	0	0	0	0	0	0	0	1	6576	1161	41	3		3	GNAT2	1	110146652	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	442199	110146652	139103969	69	170824											
GSTM5	2949	broad.mit.edu	37	chr1	110260114	110260114	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgaccctggaggacagCctgactccctggacctgcct	11	17	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110260114	A	A	110260114	1	1	226	0	1	0	0	0	0	0	0	0	6907	754	26	3		3	GSTM5	1	110260114	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	113462	110260114	138990507	70	170825											
RBM15	64783	broad.mit.edu	37	chr1	110882839	110882839	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttatcctccatcagccaGtgtggtcggggcctctgtag	11	12	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110882839	A	A	110882839	3	1	226	1	0	0	0	0	1	0	0	0	13224	1029	36	4	814	4	RBM15	1	110882839	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	622725	110882839	138367782	71	170826											
DDX20	11218	broad.mit.edu	37	chr1	112298545	112298545	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatctgacggcgcggctaCcatggcggcggcatttgaag	16	10	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112298545	T	T	112298545	1	4	226	0	1	0	0	0	0	0	0	0	4381	522	18	4		4	DDX20	1	112298545	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	1415706	112298545	136952076	72	170827											
RSBN1	54665	broad.mit.edu	37	chr1	114310857	114310857	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactcaccattcaccaaattGtacagctttcaaaactccaa	2	13	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	114310857	C	C	114310857	3	2	226	1	0	0	0	0	1	0	0	0	13807	1386	48	4	607	4	RSBN1	1	114310857	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2012312	114310857	134939764	73	170828											
BCL2L15	440603	broad.mit.edu	37	chr1	114424733	114424733	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgccaaatgtgcaactggTggtaactaaggaaatcttag	11	6	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114424733	A	A	114424733	1	1	226	0	1	0	0	0	0	0	0	0	1378	1711	59	5		5	BCL2L15	1	114424733	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	113876	114424733	134825888	74	170829											
HIPK1	204851	broad.mit.edu	37	chr1	114500621	114500621	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtttttctggataaattctGtatatataaaattattgtgt	6	3	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114500621	A	A	114500621	1	1	226	0	1	0	0	0	0	0	0	0	7183	1392	48	4		4	HIPK1	1	114500621	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	75888	114500621	134750000	75	170830											
SIKE1	80143	broad.mit.edu	37	chr1	115321741	115321741	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttcaatttggttcatttcGaatttattcaaagtttctta	4	5	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115321741	A	A	115321741	1	1	226	0	1	0	0	0	0	0	0	0	14433	1073	37	4		4	SIKE1	1	115321741	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	821120	115321741	133928880	76	170831											
TBX15	6913	broad.mit.edu	37	chr1	119427738	119427739	+	Missense_Mutation	DNP	GG	TT	TT													ctgcatgacatactgaaactGggaagtgggaaaggacccca							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	119427739	TT	TT	119427738	3	4	226	1	0	0	0	0	1	0	0	0	15774	1357	47	2	386	2	TBX15	1	119427738	Missense_Mutation	DNP	GG	TCGA-91-6829-01A-21D-1855-08	4105997	119427738	129822883	77	170832											
TBX15	6913	broad.mit.edu	37	chr1	119474366	119474366	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggcacagggcctgcagCaccagaggccaggtcagtgt	15	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119474366	A	A	119474366	1	1	226	0	1	0	0	0	0	0	0	0	15774	725	25	3		3	TBX15	1	119474366	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	46628	119474366	129776255	78	170833											
PDE4DIP	9659	broad.mit.edu	37	chr1	144915415	144915415	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actataaatgcactacatgaCacttgtctgatctgtgcatt	6	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144915415	A	A	144915415	1	1	226	0	1	0	0	0	0	0	0	0	11737	493	17	3		3	PDE4DIP	1	144915415	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	25441049	144915415	104335206	79	170834											
SEC22B	9554	broad.mit.edu	37	chr1	145109526	145109526	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttttatgtctcaccagctAcattattgagcagggggtgt	10	8	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145109526	G	G	145109526	3	3	226	1	0	0	0	0	1	0	0	0	14102	391	14	5	198	5	SEC22B	1	145109526	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	194111	145109526	104141095	80	170835											
NBPF10	100132406	broad.mit.edu	37	chr1	145293563	145293563	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actggccggcttcctggccaAccgacagaagaaatacagta	10	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145293563	G	G	145293563	3	3	226	1	0	0	0	0	1	0	0	0	10287	43	2	5	160	5	NBPF10	1	145293563	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	184037	145293563	103957058	81	170836											
HFE2	148738	broad.mit.edu	37	chr1	145416654	145416654	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctctcgatcagagcgcaaTcgtcggggagctataaccat	10	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145416654	A	A	145416654	3	1	226	1	0	0	0	0	1	0	0	0	7149	1432	50	5	1009	5	HFE2	1	145416654	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	123091	145416654	103833967	82	170837											
NBPF10	100132406	broad.mit.edu	37	chr1	145557010	145557010	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtcatcagcatgcatggGgccacctaccctccttctcc	8	16	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145557010	T	T	145557010	1	4	226	0	1	0	0	0	0	0	0	0	10287	1247	43	2		2	NBPF10	1	145557010	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	140356	145557010	103693611	83	170838											
NBPF10	100132406	broad.mit.edu	37	chr1	145765538	145765538	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaagtgtctcttccatgCcacaatcctgtatagaacaa	5	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145765538	A	A	145765538	1	1	226	0	1	0	0	0	0	0	0	0	10287	754	26	3		3	NBPF10	1	145765538	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	208528	145765538	103485083	84	170839											
GJA8	2703	broad.mit.edu	37	chr1	147381031	147381031	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gggacttgtcccggggctacCaagagacactgccttcctac	11	14	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	147381031	G	G	147381031	3	3	226	1	0	0	0	0	1	0	0	0	6469	595	21	4	951	4	GJA8	1	147381031	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1615493	147381031	101869590	85	170840											
LOC200030	200030	broad.mit.edu	37	chr1	148346485	148346485	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttttcctacaagtacaAgaaggatgaaattatttttg	7	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	148346485	G	G	148346485	1	3	226	0	1	0	0	0	0	0	0	0	8950	87	3	5		5	LOC200030	1	148346485	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	965454	148346485	100904136	86	170841											
FCGR1A	2209	broad.mit.edu	37	chr1	149761697	149761697	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgagctgtgaaacaaagtTgctcttgcagaggcctggtt	12	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	149761697	G	G	149761697	3	3	226	1	0	0	0	0	1	0	0	0	5836	1821	63	5	665	5	FCGR1A	1	149761697	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1415212	149761697	99488924	87	170842											
GOLPH3L	55204	broad.mit.edu	37	chr1	150636173	150636173	+	Frame_Shift_Del	DEL	C	-	-													atagattcgaccccgcatggCcagctctatcaggatgcccc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	150636173	-	-	150636173	7	5	226	1	0	1	0	1	0	0	0	0	6633	739	26	0	619	0	GOLPH3L	1	150636173	Frame_Shift_Del	DEL	C	TCGA-91-6829-01A-21D-1855-08	874476	150636173	98614448	88	170843											
SEMA6C	10500	broad.mit.edu	37	chr1	151115074	151115074	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagtagcagcaagggCatgaagtggggggcacgggg	20	7	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151115074	G	G	151115074	3	3	226	1	0	0	0	0	1	0	0	0	14154	710	25	4	2936	4	SEMA6C	1	151115074	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	478901	151115074	98135547	89	170844											
RFX5	5993	broad.mit.edu	37	chr1	151314767	151314767	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcagtgtctacctctccCtttgccaaaggaaaagcctc	9	13	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151314767	T	T	151314767	2	4	226	1	0	0	0	0	0	0	0	1	13374	680	24	4		4	RFX5	1	151314767	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	199693	151314767	97935854	90	170845											
TDRKH	11022	broad.mit.edu	37	chr1	151748775	151748775	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggagaaaggcagagAgttacaaagtggtaggctca	17	4	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151748775	G	G	151748775	1	3	226	0	1	0	0	0	0	0	0	0	15859	319	11	5		5	TDRKH	1	151748775	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	434008	151748775	97501846	91	170846											
THEM5	284486	broad.mit.edu	37	chr1	151820641	151820641	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgactttggccaatgcccCaggggcccatacttactttt	9	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151820641	A	A	151820641	1	1	226	0	1	0	0	0	0	0	0	0	15982	609	21	2		2	THEM5	1	151820641	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	71866	151820641	97429980	92	170847											
HRNR	388697	broad.mit.edu	37	chr1	152191355	152191355	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acccatgtcggccactgctgGaagaccgaccggagccagac	12	15	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152191355	A	A	152191355	3	1	226	1	0	0	0	0	1	0	0	0	7426	1174	41	4	5806	4	HRNR	1	152191355	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	370714	152191355	97059266	93	170848											
FLG	2312	broad.mit.edu	37	chr1	152280798	152280798	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatatgtttttctgcttgcActtctggatcctgactgccc	7	12	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152280798	T	T	152280798	3	4	226	1	0	0	0	0	1	0	0	0	5979	156	6	5	5625	5	FLG	1	152280798	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	89443	152280798	96969823	94	170849											
FLG2	388698	broad.mit.edu	37	chr1	152323313	152323313	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actagatctggaacctgtctGtgtggattgtccataaccag	10	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152323313	T	T	152323313	3	4	226	1	0	0	0	0	1	0	0	0	5980	1386	48	3	230	3	FLG2	1	152323313	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	42515	152323313	96927308	95	170850											
FLG2	388698	broad.mit.edu	37	chr1	152327330	152327330	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggattttcctgagcctgactCatgttgtccaaagccagagg	11	10	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152327330	G	G	152327330	3	3	226	1	0	0	0	0	1	0	0	0	5980	835	29	4	4247	4	FLG2	1	152327330	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4017	152327330	96923291	96	170851											
LCE3B	353143	broad.mit.edu	37	chr1	152586301	152586301	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaagatgtcctgccagcaGaaccagcagcagtgccagcc	11	15	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152586301	T	T	152586301	3	4	226	1	0	0	0	0	1	0	0	0	8742	933	33	3	17	3	LCE3B	1	152586301	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	258971	152586301	96664320	97	170852											
KPRP	448834	broad.mit.edu	37	chr1	152732910	152732911	+	Nonsense_Mutation	DNP	CC	AA	AA													gagccctgctccagcagctaCctgccactaagaccctctga							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	152732911	AA	AA	152732910	4	1	226	1	0	0	0	0	0	1	0	0	8507	518	18	3	848	3	KPRP	1	152732910	Nonsense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	146609	152732910	96517711	98	170853											
IVL	3713	broad.mit.edu	37	chr1	152883610	152883610	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actgaagcatctggagcagcAgcaggggcagttggaggtcc	16	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152883610	T	T	152883610	3	4	226	1	0	0	0	0	1	0	0	0	7999	188	7	5	1339	5	IVL	1	152883610	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	150700	152883610	96367011	99	170854											
ILF2	3608	broad.mit.edu	37	chr1	153643478	153643478	+	5'UTR	DEL	C	-	-													acaactgaagaggcgtcttgCcggcgtgtcccaataaaacc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	153643478	-	-	153643478	6	5	226	0	1	1	0	1	0	0	0	0	7781	753	26	0		0	ILF2	1	153643478	5'UTR	DEL	C	TCGA-91-6829-01A-21D-1855-08	759868	153643478	95607143	100	170855											
INTS3	65123	broad.mit.edu	37	chr1	153744470	153744470	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccctgtctaccctccaggCcatggcggtctgcagtgatt	11	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153744470	G	G	153744470	1	3	226	0	1	0	0	0	0	0	0	0	7849	754	26	4		4	INTS3	1	153744470	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	100992	153744470	95506151	101	170856											
APOA1BP	128240	broad.mit.edu	37	chr1	156561835	156561835	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggggcctgggacggccgGgccacctgcgcgacagagaa	19	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156561835	T	T	156561835	1	4	226	0	1	0	0	0	0	0	0	0	783	1247	43	2		2	APOA1BP	1	156561835	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2817365	156561835	92688786	102	170857											
NES	10763	broad.mit.edu	37	chr1	156640299	156640299	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaggggcatcttccaggatCggggtgtacgttgggctggg	18	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156640299	A	A	156640299	2	1	226	1	0	0	0	0	0	0	0	1	10432	871	31	3		3	NES	1	156640299	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	78464	156640299	92610322	103	170858											
SH2D2A	9047	broad.mit.edu	37	chr1	156778929	156778949	+	Intron	DEL	TCACCTTCCCCCATCTACCTG	-	-													atccactctgaacaccttctTcaccttcccccatctacctg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	156778949	-	-	156778929	6	5	226	0	1	1	0	1	0	0	0	0	14345	1798	62	0		0	SH2D2A	1	156778929	Intron	DEL	TCACCTTCCCCCATCTACCTG	TCGA-91-6829-01A-21D-1855-08	138630	156778929	92471692	104	170859											
NTRK1	4914	broad.mit.edu	37	chr1	156834455	156834455	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgggaggctgggatgggCagggagggccaggggcccag	23	8	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156834455	A	A	156834455	1	1	226	0	1	0	0	0	0	0	0	0	10801	725	25	3		3	NTRK1	1	156834455	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	55526	156834455	92416166	105	170860											
ARHGEF11	9826	broad.mit.edu	37	chr1	156910316	156910316	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggggctgggaacactgActtattctacagttgtttac	10	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156910316	T	T	156910316	1	4	226	0	1	0	0	0	0	0	0	0	898	290	10	5		5	ARHGEF11	1	156910316	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	75861	156910316	92340305	106	170861											
ETV3L	440695	broad.mit.edu	37	chr1	157067890	157067890	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaatgaaatactctcataCcgatttttttttttttgagt	4	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157067890	A	A	157067890	1	1	226	0	1	0	0	0	0	0	0	0	5322	522	18	3		3	ETV3L	1	157067890	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	157574	157067890	92182731	107	170862											
CD1D	912	broad.mit.edu	37	chr1	158146806	158146806	+	5'Flank	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgagaggtccttaggattcaGattggctacctgttgcagaa	12	8	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158146806	T	T	158146806	1	4	226	0	1	0	0	0	0	0	0	0	3007	957	33	3		3	CD1D	1	158146806	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	1078916	158146806	91103815	108	170863											
CD1D	912	broad.mit.edu	37	chr1	158146979	158146980	+	5'Flank	DNP	CG	TT	TT													tgctgctgctgtgtgtctatCgaattggatttgcagggttc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	158146980	TT	TT	158146979	1	4	226	0	1	0	0	0	0	0	0	0	3007	899	31	4		4	CD1D	1	158146979	5'Flank	DNP	CG	TCGA-91-6829-01A-21D-1855-08	173	158146979	91103642	109	170864											
SPTA1	6708	broad.mit.edu	37	chr1	158584891	158584891	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtaaagacccagaataTtggttctctgaagcaactct	9	9	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158584891	C	C	158584891	1	2	226	0	1	0	0	0	0	0	0	0	15234	1508	52	5		5	SPTA1	1	158584891	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	437912	158584891	90665730	110	170865											
SPTA1	6708	broad.mit.edu	37	chr1	158631214	158631214	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttcctgcagaggaaaggAatttcaaagtttcggattat	9	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158631214	G	G	158631214	1	3	226	0	1	0	0	0	0	0	0	0	15234	261	9	5		5	SPTA1	1	158631214	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	46323	158631214	90619407	111	170866											
SPTA1	6708	broad.mit.edu	37	chr1	158656363	158656364	+	5'UTR	INS	-	AGAT	AGAT													tgtcagagagagagagagagINSagaaataattcaaatggaac							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AGAT	158656364	AGAT	AGAT	158656363	6	5	226	0	1	1	1	0	0	0	0	0	15234	957	33	0		0	SPTA1	1	158656363	5'UTR	INS	-	TCGA-91-6829-01A-21D-1855-08	25149	158656363	90594258	112	170867											
OR6K2	81448	broad.mit.edu	37	chr1	158669516	158669516	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttacggaaaaaaatatcttAgcttgacctatgtgcttttt	6	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158669516	T	T	158669516	2	4	226	1	0	0	0	0	0	0	0	1	11296	407	15	5		5	OR6K2	1	158669516	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	13153	158669516	90581105	113	170868											
MNDA	4332	broad.mit.edu	37	chr1	158811874	158811874	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcatatctcattttttAaaattgtctgcataaatgtg	5	5	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158811874	T	T	158811874	1	4	226	0	1	0	0	0	0	0	0	0	9770	377	13	5		5	MNDA	1	158811874	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	142358	158811874	90438747	114	170869											
PYHIN1	149628	broad.mit.edu	37	chr1	158908969	158908969	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaggagccagcacgtccAcagccatgggccgttcccca	11	17	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	158908969	G	G	158908969	3	3	226	1	0	0	0	0	1	0	0	0	12973	159	6	5	521	5	PYHIN1	1	158908969	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	97095	158908969	90341652	115	170870											
PYHIN1	149628	broad.mit.edu	37	chr1	158911812	158911812	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgcaactgccagtaaaaatAttttccgagaagacccaata	6	10	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158911812	T	T	158911812	3	4	226	1	0	0	0	0	1	0	0	0	12973	449	16	5	639	5	PYHIN1	1	158911812	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	2843	158911812	90338809	116	170871											
IFI16	3428	broad.mit.edu	37	chr1	158970048	158970048	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaacctatccagttcctcatCggtgatgttatccaggctgg	9	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158970048	A	A	158970048	1	1	226	0	1	0	0	0	0	0	0	0	7581	899	31	3		3	IFI16	1	158970048	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	58236	158970048	90280573	117	170872											
SLAMF9	89886	broad.mit.edu	37	chr1	159921405	159921405	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgaggaaggattctctggGtgctgggaagaaaccaagct	15	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159921405	A	A	159921405	1	1	226	0	1	0	0	0	0	0	0	0	14484	1276	44	4		4	SLAMF9	1	159921405	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	951357	159921405	89329216	118	170873											
ATP1A4	480	broad.mit.edu	37	chr1	160134024	160134024	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccctgacgtcaggcctggCggttggccagacacctatcg	12	15	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160134024	T	T	160134024	3	4	226	1	0	0	0	0	1	0	0	0	1135	768	27	4	883	4	ATP1A4	1	160134024	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	212619	160134024	89116597	119	170874											
DCAF8	50717	broad.mit.edu	37	chr1	160251772	160251772	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagtagacaaaatagcccAcatcagttgatgtgatggaa	10	7	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160251772	T	T	160251772	1	4	226	0	1	0	0	0	0	0	0	0	4309	174	6	5		5	DCAF8	1	160251772	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	117748	160251772	88998849	120	170875											
SLAMF1	6504	broad.mit.edu	37	chr1	160616716	160616716	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgaaggtcaaggagAggagccccttgggatccatc	13	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160616716	T	T	160616716	3	4	226	1	0	0	0	0	1	0	0	0	14480	304	11	5	1015	5	SLAMF1	1	160616716	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	364944	160616716	88633905	121	170876											
RXRG	6258	broad.mit.edu	37	chr1	165380320	165380321	+	Nonsense_Mutation	DNP	GG	AT	AT													ctcactctcagctcgctctcGgctcctctgtctttcttctt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	165380321	AT	AT	165380320	4	1	226	1	0	0	0	0	0	1	0	0	13876	1124	39	4	766	4	RXRG	1	165380320	Nonsense_Mutation	DNP	GG	TCGA-91-6829-01A-21D-1855-08	4763604	165380320	83870301	122	170877											
FAM78B	149297	broad.mit.edu	37	chr1	166039591	166039591	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggggatgggttccatccGgctcaggatccggggctgct	18	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166039591	T	T	166039591	2	4	226	1	0	0	0	0	0	0	0	1	5680	1115	39	1		1	FAM78B	1	166039591	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	659271	166039591	83211030	123	170878											
FAM78B	149297	broad.mit.edu	37	chr1	166039623	166039623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgctcctgctgagtcCtgcccaccagccgggcccgc	14	18	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166039623	T	T	166039623	3	4	226	1	0	0	0	0	1	0	0	0	5680	681	24	4	148	4	FAM78B	1	166039623	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	32	166039623	83210998	124	170879											
ADCY10	55811	broad.mit.edu	37	chr1	167778883	167778883	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atagataatcacaaggacatAgtgcttattaaaatcttttt	5	5	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167778883	T	T	167778883	1	4	226	0	1	0	0	0	0	0	0	0	293	435	15	5		5	ADCY10	1	167778883	3'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	1739260	167778883	81471738	125	170880											
XCL2	6846	broad.mit.edu	37	chr1	168510285	168510285	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgttggatttcctgtccaTgctcctgaccacgtctctca	9	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168510285	G	G	168510285	3	3	226	1	0	0	0	0	1	0	0	0	17551	1464	51	5	98	5	XCL2	1	168510285	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	731402	168510285	80740336	126	170881											
SELP	6403	broad.mit.edu	37	chr1	169588315	169588315	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttctcacacatagatctGggctctaccctaattactta	4	11	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169588315	T	T	169588315	1	4	226	0	1	0	0	0	0	0	0	0	14132	1363	47	2		2	SELP	1	169588315	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1078030	169588315	79662306	127	170882											
KLHL20	27252	broad.mit.edu	37	chr1	173726252	173726252	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgatgatctgttatatGcagtaggaggccatgatgga	12	5	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173726252	A	A	173726252	3	1	226	1	0	0	0	0	1	0	0	0	8446	1319	46	4	1127	4	KLHL20	1	173726252	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4137937	173726252	75524369	128	170883											
TNN	63923	broad.mit.edu	37	chr1	175106085	175106085	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtggcctccagcaaggagCggtataagctgacagttggg	15	8	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175106085	A	A	175106085	2	1	226	1	0	0	0	0	0	0	0	1	16446	759	27	3		3	TNN	1	175106085	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1379833	175106085	74144536	129	170884											
TNR	7143	broad.mit.edu	37	chr1	175372835	175372835	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggatgggcaaaggcctctCtactcattctctgaccagat	9	11	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175372835	A	A	175372835	1	1	226	0	1	0	0	0	0	0	0	0	16461	928	32	3		3	TNR	1	175372835	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	266750	175372835	73877786	130	170885											
RASAL2	9462	broad.mit.edu	37	chr1	178111085	178111085	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatatttccgggaagctgcAttctccataggagctcttgg	10	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178111085	T	T	178111085	1	4	226	0	1	0	0	0	0	0	0	0	13172	232	8	5		5	RASAL2	1	178111085	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2738250	178111085	71139536	131	170886											
ABL2	27	broad.mit.edu	37	chr1	179190116	179190116	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagaatatgtagactggaTgtacttttacaagtatgagc	10	5	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179190116	A	A	179190116	1	1	226	0	1	0	0	0	0	0	0	0	93	1479	51	5		5	ABL2	1	179190116	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1079031	179190116	70060505	132	170887											
C1orf125	126859	broad.mit.edu	37	chr1	179352571	179352571	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataagtctgccaccttaattTtttaggaaacctaataaaag	5	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179352571	C	C	179352571	1	2	226	0	1	0	0	0	0	0	0	0	2013	1856	64	5		5	C1orf125	1	179352571	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	162455	179352571	69898050	133	170888											
TOR1AIP2	163590	broad.mit.edu	37	chr1	179834280	179834281	+	Intron	INS	-	A	A													agggaaccactgttgtccacINSaatcagggcaatgtgaatta							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179834281	A	A	179834280	6	5	226	0	1	1	1	0	0	0	0	0	16497	478	17	0		0	TOR1AIP2	1	179834280	Intron	INS	-	TCGA-91-6829-01A-21D-1855-08	481709	179834280	69416341	134	170889											
CACNA1E	777	broad.mit.edu	37	chr1	181745277	181745277	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatcatggacaactttgAgtacctgactcgggactcct	9	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	181745277	T	T	181745277	3	4	226	1	0	0	0	0	1	0	0	0	2568	304	11	5	5330	5	CACNA1E	1	181745277	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	1910997	181745277	67505344	135	170890											
ZNF648	127665	broad.mit.edu	37	chr1	182025654	182025654	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcccttctccccggagtGgatctgttggtgccgcttca	11	13	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182025654	T	T	182025654	3	4	226	1	0	0	0	0	1	0	0	0	18190	1348	47	2	218	2	ZNF648	1	182025654	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	280377	182025654	67224967	136	170891											
ZNF648	127665	broad.mit.edu	37	chr1	182026579	182026579	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggcctggggaaacacaaCagagaagagttccctgcgga	13	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182026579	A	A	182026579	2	1	226	1	0	0	0	0	0	0	0	1	18190	465	17	3		3	ZNF648	1	182026579	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	925	182026579	67224042	137	170892											
FAM129A	116496	broad.mit.edu	37	chr1	184764797	184764797	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acccgaggcagtgatgggttCtggctcttcctgggcgggtt	16	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184764797	A	A	184764797	4	1	226	1	0	0	0	0	0	1	0	0	5482	922	32	3	689	3	FAM129A	1	184764797	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2738218	184764797	64485824	138	170893											
FAM5C	339479	broad.mit.edu	37	chr1	190067188	190067188	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcataatccattgtgtttGgcaatttggcattaaacgcc	8	8	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067188	T	T	190067188	3	4	226	1	0	0	0	0	1	0	0	0	5645	1348	47	2	43	2	FAM5C	1	190067188	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	5302391	190067188	59183433	139	170894											
RGS1	5996	broad.mit.edu	37	chr1	192545118	192545118	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttatctttaatggcagaaGgattgagaatgaatggaaga	12	2	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192545118	A	A	192545118	1	1	226	0	1	0	0	0	0	0	0	0	13401	1015	35	4		4	RGS1	1	192545118	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2477930	192545118	56705503	140	170895											
RGS1	5996	broad.mit.edu	37	chr1	192547357	192547357	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcgtttctttttagctggtCaaaatgtctttggaagtttc	8	7	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192547357	A	A	192547357	3	1	226	1	0	0	0	0	1	0	0	0	13401	827	29	3	300	3	RGS1	1	192547357	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2239	192547357	56703264	141	170896											
PTPRC	5788	broad.mit.edu	37	chr1	198608361	198608361	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttgcttttcagaaggaCgcatgctgtttcttagggac	10	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	198608361	A	A	198608361	1	1	226	0	1	0	0	0	0	0	0	0	12905	551	19	3		3	PTPRC	1	198608361	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	6061004	198608361	50642260	142	170897											
PTPRC	5788	broad.mit.edu	37	chr1	198668678	198668678	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagactgatgtaatgatctcActttcctaccttaggtgttt	7	8	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	198668678	T	T	198668678	1	4	226	0	1	0	0	0	0	0	0	0	12905	174	6	5		5	PTPRC	1	198668678	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	60317	198668678	50581943	143	170898											
KIF14	9928	broad.mit.edu	37	chr1	200530082	200530082	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaagaaaagataagggccgGgcacagcggctcacgcctgt	13	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200530082	A	A	200530082	1	1	226	0	1	0	0	0	0	0	0	0	8346	1247	43	4		4	KIF14	1	200530082	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1861404	200530082	48720539	144	170899											
CACNA1S	779	broad.mit.edu	37	chr1	201009237	201009237	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagagtaggctgagtgGggtcttcctggggagccaca	19	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201009237	T	T	201009237	1	4	226	0	1	0	0	0	0	0	0	0	2573	1247	43	2		2	CACNA1S	1	201009237	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	479155	201009237	48241384	145	170900											
IPO9	55705	broad.mit.edu	37	chr1	201827504	201827504	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcacttctaacagtcatgActgaagcggtttacaattaa	6	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201827504	T	T	201827504	1	4	226	0	1	0	0	0	0	0	0	0	7869	290	10	5		5	IPO9	1	201827504	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	818267	201827504	47423117	146	170901											
IPO9	55705	broad.mit.edu	37	chr1	201843470	201843470	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tcatggaggctaatgccgctCgccaggccactcctgcagag	12	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	201843470	G	G	201843470	3	3	226	1	0	0	0	0	1	0	0	0	7869	884	31	4	2885	4	IPO9	1	201843470	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	15966	201843470	47407151	147	170902											
LGR6	59352	broad.mit.edu	37	chr1	202245436	202245436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctctcttccaccaggcGcctagatgccaacctcatct	5	18	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	202245436	T	T	202245436	3	4	226	1	0	0	0	0	1	0	0	0	8830	1087	38	3	596	3	LGR6	1	202245436	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	401966	202245436	47005185	148	170903											
UBE2T	29089	broad.mit.edu	37	chr1	202301011	202301011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcctactagctgactggcCttccttttctgtgttgagtt	9	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202301011	A	A	202301011	3	1	226	1	0	0	0	0	1	0	0	0	16999	680	24	2	51	2	UBE2T	1	202301011	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	55575	202301011	46949610	149	170904											
KLHL12	59349	broad.mit.edu	37	chr1	202880143	202880143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacactaaggtaagagtcCgtcaaggttttggatcctga	10	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202880143	A	A	202880143	1	1	226	0	1	0	0	0	0	0	0	0	8439	667	23	1		1	KLHL12	1	202880143	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	579132	202880143	46370478	150	170905											
KLHL12	59349	broad.mit.edu	37	chr1	202887329	202887329	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcacttgattagcttttcCacctctccttgactcagaag	6	13	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202887329	A	A	202887329	2	1	226	1	0	0	0	0	0	0	0	1	8439	581	21	2		2	KLHL12	1	202887329	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	7186	202887329	46363292	151	170906											
SNRPE	6635	broad.mit.edu	37	chr1	203830805	203830805	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatggcgtaccgtggccaGggtcagaaagtgcagaaggt	15	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203830805	T	T	203830805	3	4	226	1	0	0	0	0	1	0	0	0	14981	991	35	2	20	2	SNRPE	1	203830805	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	943476	203830805	45419816	152	170907											
CNTN2	6900	broad.mit.edu	37	chr1	205033308	205033308	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgatagcttaggccagaGaaaaaagggcttggttctgg	13	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205033308	A	A	205033308	1	1	226	0	1	0	0	0	0	0	0	0	3673	957	33	4		4	CNTN2	1	205033308	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1202503	205033308	44217313	153	170908											
SLC45A3	85414	broad.mit.edu	37	chr1	205628458	205628458	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcggcagacaccatataGgcagtgacagactggctgag	13	11	0	4	rs141291475	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205628458	A	A	205628458	2	1	226	1	0	0	0	0	0	0	0	1	14756	987	35	4		4	SLC45A3	1	205628458	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	595150	205628458	43622163	154	170909											
IL19	29949	broad.mit.edu	37	chr1	207010478	207010478	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcctaatctccaatgTactctaaatgcaccaggctt	4	13	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207010478	A	A	207010478	1	1	226	0	1	0	0	0	0	0	0	0	7719	1653	57	5		5	IL19	1	207010478	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1382020	207010478	42240143	155	170910											
C1orf116	79098	broad.mit.edu	37	chr1	207195296	207195296	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacagggtctgtactggtcGcagagtctactccttcaaca	11	11	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207195296	C	C	207195296	1	2	226	0	1	0	0	0	0	0	0	0	2009	1102	38	4		4	C1orf116	1	207195296	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	184818	207195296	42055325	156	170911											
CR1	1378	broad.mit.edu	37	chr1	207780557	207780557	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggtgagttaaatgggaaaTatgtgtagcgtataaccatt	11	3	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	207780557	C	C	207780557	1	2	226	0	1	0	0	0	0	0	0	0	3872	1421	49	5		5	CR1	1	207780557	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	585261	207780557	41470064	157	170912											
TRAF3IP3	80342	broad.mit.edu	37	chr1	209951496	209951496	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagagaaactcaccctggtGaccagagtacagcagttgca	11	11	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209951496	A	A	209951496	2	1	226	1	0	0	0	0	0	0	0	1	16566	1277	45	4		4	TRAF3IP3	1	209951496	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	2170939	209951496	39299125	158	170913											
RPS6KC1	26750	broad.mit.edu	37	chr1	213434798	213434798	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccagtagtatttagtatAtgctctctcagcattaaaaa	6	8	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	213434798	G	G	213434798	1	3	226	0	1	0	0	0	0	0	0	0	13769	464	16	5		5	RPS6KC1	1	213434798	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3483302	213434798	35815823	159	170914											
PTPN14	5784	broad.mit.edu	37	chr1	214557623	214557623	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgcttgcccccggcttgctTggtaccacattattctttgg	10	13	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	214557623	A	A	214557623	2	1	226	1	0	0	0	0	0	0	0	1	12889	1799	63	5		5	PTPN14	1	214557623	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	1122825	214557623	34692998	160	170915											
KCTD3	51133	broad.mit.edu	37	chr1	215793486	215793486	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtcctttattagcaagGgcaagaaggactgagagctt	12	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215793486	C	C	215793486	3	2	226	1	0	0	0	0	1	0	0	0	8180	1223	43	4	2044	4	KCTD3	1	215793486	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1235863	215793486	33457135	161	170916											
USH2A	7399	broad.mit.edu	37	chr1	215853726	215853726	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggcttgttccctgtaagAaaattaacaggttaagttgt	10	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	215853726	G	G	215853726	1	3	226	0	1	0	0	0	0	0	0	0	17162	261	9	5		5	USH2A	1	215853726	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	60240	215853726	33396895	162	170917											
USH2A	7399	broad.mit.edu	37	chr1	216497008	216497008	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgtcaggatgctaaatGtgacattgccacgggaatat	12	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216497008	T	T	216497008	3	4	226	1	0	0	0	0	1	0	0	0	17162	1377	48	3	14524	3	USH2A	1	216497008	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	643282	216497008	32753613	163	170918											
MARK1	4139	broad.mit.edu	37	chr1	220805550	220805550	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaaatttctagacattatGgtcaccatgggctttgcacg	8	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220805550	A	A	220805550	3	1	226	1	0	0	0	0	1	0	0	0	9404	1348	47	4	1059	4	MARK1	1	220805550	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4308542	220805550	28445071	164	170919											
HHIPL2	79802	broad.mit.edu	37	chr1	222717255	222717255	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcaggcagccctgaggatCttgggccaccatgcccaggt	13	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	222717255	A	A	222717255	3	1	226	1	0	0	0	0	1	0	0	0	7161	913	32	3	1608	3	HHIPL2	1	222717255	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1911705	222717255	26533366	165	170920											
AIDA	64853	broad.mit.edu	37	chr1	222843613	222843613	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaggaattaaaacaagccAcataaaccacagatagcaca	5	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	222843613	G	G	222843613	1	3	226	0	1	0	0	0	0	0	0	0	423	174	6	5		5	AIDA	1	222843613	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	126358	222843613	26407008	166	170921											
TP53BP2	7159	broad.mit.edu	37	chr1	223991799	223991799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcaaaagaccagcctgggCaacacagtaagaccctgtct	9	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	223991799	A	A	223991799	1	1	226	0	1	0	0	0	0	0	0	0	16508	725	25	3		3	TP53BP2	1	223991799	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1148186	223991799	25258822	167	170922											
ZNF678	339500	broad.mit.edu	37	chr1	227826920	227826920	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccattggccttcattgccGcacttgaaacaggtgccagc	11	13	1	1	rs140344414	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227826920	T	T	227826920	1	4	226	0	1	0	0	0	0	0	0	0	18212	1102	38	3		3	ZNF678	1	227826920	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3835121	227826920	21423701	168	170923											
OBSCN	84033	broad.mit.edu	37	chr1	228399598	228399598	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatcgtgggtaatcccacGccacaggtgagctgggagaa	14	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228399598	T	T	228399598	2	4	226	1	0	0	0	0	0	0	0	1	10907	1074	38	3		3	OBSCN	1	228399598	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	572678	228399598	20851023	169	170924											
ACTA1	58	broad.mit.edu	37	chr1	229567267	229567267	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagaagcatttgcggtggacGatggaagggccggcctcgtc	16	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229567267	T	T	229567267	2	4	226	1	0	0	0	0	0	0	0	1	191	1048	37	3		3	ACTA1	1	229567267	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	1167669	229567267	19683354	170	170925											
NUP133	55746	broad.mit.edu	37	chr1	229594020	229594020	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacgagtttccatatttgcCaaacccagaagtgttgcatg	8	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	229594020	A	A	229594020	3	1	226	1	0	0	0	0	1	0	0	0	10849	593	21	2	626	2	NUP133	1	229594020	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	26753	229594020	19656601	171	170926											
ABCB10	23456	broad.mit.edu	37	chr1	229661863	229661864	+	Splice_Site	DNP	CC	AA	AA													gcaagaaaacaaaatgggttCctacaaattggaaataaaac							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	229661864	AA	AA	229661863	5	1	226	1	0	0	0	0	0	0	1	0	41	869	30	3	506	3	ABCB10	1	229661863	Splice_Site	DNP	CC	TCGA-91-6829-01A-21D-1855-08	67843	229661863	19588758	172	170927											
AGT	183	broad.mit.edu	37	chr1	230846486	230846486	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaggtggaaggggtgtatGtacacccggtcacctgcagc	15	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230846486	A	A	230846486	2	1	226	1	0	0	0	0	0	0	0	1	399	1372	48	4		4	AGT	1	230846486	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	1184623	230846486	18404135	173	170928											
PCNXL2	80003	broad.mit.edu	37	chr1	233120019	233120019	+	3'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaggtgggaggtgtggggGagccagcctccccgcccggc	19	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233120019	T	T	233120019	1	4	226	0	1	0	0	0	0	0	0	0	11686	1189	41	3		3	PCNXL2	1	233120019	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	2273533	233120019	16130602	174	170929											
PCNXL2	80003	broad.mit.edu	37	chr1	233353746	233353746	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacattagtgacagcacaCgctactggtaagaattagat	9	8	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233353746	A	A	233353746	1	1	226	0	1	0	0	0	0	0	0	0	11686	551	19	3		3	PCNXL2	1	233353746	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	233727	233353746	15896875	175	170930											
B3GALNT2	148789	broad.mit.edu	37	chr1	235616306	235616306	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaaatcctaaatacttcTggtcccaggcattttggata	7	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235616306	C	C	235616306	1	2	226	0	1	0	0	0	0	0	0	0	1251	1595	55	5		5	B3GALNT2	1	235616306	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2262560	235616306	13634315	176	170931											
LYST	1130	broad.mit.edu	37	chr1	235969542	235969542	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtagatccaacgacacataGaccaaatgtctgctgcttgg	9	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	235969542	C	C	235969542	3	2	226	1	0	0	0	0	1	0	0	0	9216	942	33	4	8703	4	LYST	1	235969542	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	353236	235969542	13281079	177	170932											
ACTN2	88	broad.mit.edu	37	chr1	236906299	236906299	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgcttggaacacctggctgAgaagttcaggcagaaggcct	14	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236906299	T	T	236906299	3	4	226	1	0	0	0	0	1	0	0	0	205	304	11	5	1253	5	ACTN2	1	236906299	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	936757	236906299	12344322	178	170933											
ACTN2	88	broad.mit.edu	37	chr1	236906314	236906314	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgagaagttcaggcagaAggcctcaacgcacgagactt	13	10	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236906314	G	G	236906314	3	3	226	1	0	0	0	0	1	0	0	0	205	72	3	5	1268	5	ACTN2	1	236906314	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	15	236906314	12344307	179	170934											
ACTN2	88	broad.mit.edu	37	chr1	236912547	236912547	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatatgttcattgtccacAgcattgaggagatccaggta	10	7	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	236912547	G	G	236912547	3	3	226	1	0	0	0	0	1	0	0	0	205	188	7	5	1693	5	ACTN2	1	236912547	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	6233	236912547	12338074	180	170935											
RYR2	6262	broad.mit.edu	37	chr1	237663945	237663945	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattcaaatcttttgactttGgctctgaagctgattctctg	7	8	4	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237663945	A	A	237663945	1	1	226	0	1	0	0	0	0	0	0	0	13880	1363	47	4		4	RYR2	1	237663945	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	751398	237663945	11586676	181	170936											
RYR2	6262	broad.mit.edu	37	chr1	237890381	237890381	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttatttgtgtcattctaCctcaggtggaacatcctcag	7	9	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237890381	T	T	237890381	1	4	226	0	1	0	0	0	0	0	0	0	13880	522	18	4		4	RYR2	1	237890381	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	226436	237890381	11360240	182	170937											
RGS7	6000	broad.mit.edu	37	chr1	240969429	240969429	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtggtgtgaggctcacCgtacacccacctgagcatct	11	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240969429	A	A	240969429	1	1	226	0	1	0	0	0	0	0	0	0	13419	667	23	1		1	RGS7	1	240969429	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3079048	240969429	8281192	183	170938											
PLD5	200150	broad.mit.edu	37	chr1	242383207	242383207	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgctgtaggttttaggatCcttatctgcagtagcgtgct	11	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	242383207	A	A	242383207	1	1	226	0	1	0	0	0	0	0	0	0	12144	870	30	3		3	PLD5	1	242383207	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1413778	242383207	6867414	184	170939											
AKT3	10000	broad.mit.edu	37	chr1	243788289	243788289	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctagtgacaaagcccatcCctagagccttcatgtactca	7	14	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	243788289	A	A	243788289	1	1	226	0	1	0	0	0	0	0	0	0	481	638	22	2		2	AKT3	1	243788289	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1405082	243788289	5462332	185	170940											
SMYD3	64754	broad.mit.edu	37	chr1	246091142	246091142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggacaatgaaaagttgtcCcctcaggcacaatcagtttt	8	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	246091142	A	A	246091142	1	1	226	0	1	0	0	0	0	0	0	0	14937	638	22	2		2	SMYD3	1	246091142	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2302853	246091142	3159479	186	170941											
NLRP3	114548	broad.mit.edu	37	chr1	247582216	247582216	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagaagggctgcatcccCctcccgaggggtcagacaga	12	16	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247582216	A	A	247582216	2	1	226	1	0	0	0	0	0	0	0	1	10573	610	22	2		2	NLRP3	1	247582216	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1491074	247582216	1668405	187	170942											
NLRP3	114548	broad.mit.edu	37	chr1	247587692	247587692	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcctttgacgagcacatagGaccgctctgcactgactggc	11	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247587692	T	T	247587692	3	4	226	1	0	0	0	0	1	0	0	0	10573	1174	41	3	957	3	NLRP3	1	247587692	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	5476	247587692	1662929	188	170943											
OR2B11	127623	broad.mit.edu	37	chr1	247614514	247614514	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatacatgtaaatcgcaggTaggtagaagagggagacgat	14	4	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247614514	A	A	247614514	2	1	226	1	0	0	0	0	0	0	0	1	11082	1625	57	5		5	OR2B11	1	247614514	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	26822	247614514	1636107	189	170944											
OR2B11	127623	broad.mit.edu	37	chr1	247614915	247614915	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gatggccacgtagcggtccaGggccatggcggccaggacga	17	12	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	247614915	C	C	247614915	3	2	226	1	0	0	0	0	1	0	0	0	11082	991	35	4	586	4	OR2B11	1	247614915	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	401	247614915	1635706	190	170945											
OR2G2	81470	broad.mit.edu	37	chr1	247751975	247751975	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctgtttggttcacctttAcaactcccatgccctgggat	9	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247751975	T	T	247751975	3	4	226	1	0	0	0	0	1	0	0	0	11092	391	14	5	316	5	OR2G2	1	247751975	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	137060	247751975	1498646	191	170946											
OR2G3	81469	broad.mit.edu	37	chr1	247769494	247769494	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aattggtgctttttgttgttAgtgttctgtttgttgtcatt	10	3	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247769494	T	T	247769494	3	4	226	1	0	0	0	0	1	0	0	0	11093	420	15	5	609	5	OR2G3	1	247769494	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	17519	247769494	1481127	192	170947											
OR13G1	441933	broad.mit.edu	37	chr1	247835474	247835474	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgcctgcatctccctattCtggaagctgtacaccatcgg	8	15	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	247835474	G	G	247835474	3	3	226	1	0	0	0	0	1	0	0	0	11036	912	32	4	57	4	OR13G1	1	247835474	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	65980	247835474	1415147	193	170948											
OR11L1	391189	broad.mit.edu	37	chr1	248004727	248004727	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaatcatcagggaaggcaGaaagcctgtgctgacccctg	13	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248004727	A	A	248004727	2	1	226	1	0	0	0	0	0	0	0	1	11024	933	33	4		4	OR11L1	1	248004727	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	169253	248004727	1245894	194	170949											
OR2T8	343172	broad.mit.edu	37	chr1	248084206	248084206	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgacataggtttcatcgCtttcacacaagtacttttct	5	9	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248084206	T	T	248084206	1	4	226	0	1	0	0	0	0	0	0	0	11124	812	28	4		4	OR2T8	1	248084206	5'Flank	SNP	C	TCGA-91-6829-01A-21D-1855-08	79479	248084206	1166415	195	170950											
OR2L3	391192	broad.mit.edu	37	chr1	248224682	248224682	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaaatctgcagaagggagGaagaaagcctacctgacctg	12	8	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248224682	T	T	248224682	3	4	226	1	0	0	0	0	1	0	0	0	11102	1165	41	3	701	3	OR2L3	1	248224682	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	140476	248224682	1025939	196	170951											
OR2L13	284521	broad.mit.edu	37	chr1	248247357	248247357	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagccaaacgcaccagcaCgggggcctcgcagaagaagt	12	13	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247357	T	T	248247357	1	4	226	0	1	0	0	0	0	0	0	0	11100	551	19	4		4	OR2L13	1	248247357	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	22675	248247357	1003264	197	170952											
OR2L13	284521	broad.mit.edu	37	chr1	248247877	248247877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggagaataaagtctgGggtagtatttctcatctcca	9	9	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247877	T	T	248247877	1	4	226	0	1	0	0	0	0	0	0	0	11100	1247	43	2		2	OR2L13	1	248247877	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	520	248247877	1002744	198	170953											
OR2T2	401992	broad.mit.edu	37	chr1	248616085	248616085	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctttacagcccaaggaGcttgtcatggaccatgggca	11	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248616085	T	T	248616085	1	4	226	0	1	0	0	0	0	0	0	0	11114	986	34	3		3	OR2T2	1	248616085	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	368208	248616085	634536	199	170954											
PXDN	7837	broad.mit.edu	37	chr2	1652063	1652063	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tagggtgggatcccgtggtcCcggccccgctggatgttgat	16	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1652063	G	G	1652063	2	3	226	1	0	0	0	0	0	0	0	1	12955	610	22	4		4	PXDN	2	1652063	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08		1652063	241547310	200	170955											
PXDN	7837	broad.mit.edu	37	chr2	1653374	1653374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagttgttcacgcgccgGtgggcggtacagcccgacag	16	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1653374	T	T	1653374	3	4	226	1	0	0	0	0	1	0	0	0	12955	1252	44	3	2289	3	PXDN	2	1653374	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1311	1653374	241545999	201	170956											
MYT1L	23040	broad.mit.edu	37	chr2	1855382	1855382	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	catttcagtgagaaagagcaTtttggagagaagagtagcat	12	4	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1855382	A	A	1855382	1	1	226	0	1	0	0	0	0	0	0	0	10201	1508	52	5		5	MYT1L	2	1855382	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	202008	1855382	241343991	202	170957											
SOX11	6664	broad.mit.edu	37	chr2	5833567	5833567	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gacgacgagctgcagctgcaGatcaaacaggagccggacga	14	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	5833567	C	C	5833567	3	2	226	1	0	0	0	0	1	0	0	0	15056	933	33	4	716	4	SOX11	2	5833567	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3978185	5833567	237365806	203	170958											
RAD51AP2	729475	broad.mit.edu	37	chr2	17697591	17697591	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcttattaaagaaatttcatCcatgtcatcaaagtccatta	3	8	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17697591	T	T	17697591	3	4	226	1	0	0	0	0	1	0	0	0	13095	855	30	4	1399	4	RAD51AP2	2	17697591	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	11864024	17697591	225501782	204	170959											
SMC6	79677	broad.mit.edu	37	chr2	17865120	17865120	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagatttaactgggaagaacAgggaggggcagagagtacta	15	5	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17865120	T	T	17865120	1	4	226	0	1	0	0	0	0	0	0	0	14901	203	7	5		5	SMC6	2	17865120	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	167529	17865120	225334253	205	170960											
APOB	338	broad.mit.edu	37	chr2	21241735	21241735	+	Intron	DEL	T	-	-													agttaacccaggtcttagaaTaggcctgccgcttagtgggt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	21241735	-	-	21241735	6	5	226	0	1	1	0	1	0	0	0	0	787	1421	49	0		0	APOB	2	21241735	Intron	DEL	T	TCGA-91-6829-01A-21D-1855-08	3376615	21241735	221957638	206	170961											
DPYSL5	56896	broad.mit.edu	37	chr2	27156067	27156067	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgactttgccagggttattcTgatgcttgtgaagtttatgg	12	5	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27156067	C	C	27156067	1	2	226	0	1	0	0	0	0	0	0	0	4790	1595	55	5		5	DPYSL5	2	27156067	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	5914332	27156067	216043306	207	170962											
CAD	790	broad.mit.edu	37	chr2	27446491	27446491	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctctgggcgctgctttctGacatcccagaaccatgggtt	12	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27446491	A	A	27446491	2	1	226	1	0	0	0	0	0	0	0	1	2591	1277	45	4		4	CAD	2	27446491	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	290424	27446491	215752882	208	170963											
ZNF512	84450	broad.mit.edu	37	chr2	27825851	27825851	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaagatggccagagacaagGaagggttgtgctgatgggag	18	4	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27825851	T	T	27825851	1	4	226	0	1	0	0	0	0	0	0	0	18083	1189	41	3		3	ZNF512	2	27825851	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	379360	27825851	215373522	209	170964											
PLB1	151056	broad.mit.edu	37	chr2	28776005	28776006	+	Intron	DNP	CT	AA	AA													gtatatttgtaaagccatggCtgtgtttgactattctttaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	28776006	AA	AA	28776005	1	1	226	0	1	0	0	0	0	0	0	0	12119	812	28	3		3	PLB1	2	28776005	Intron	DNP	CT	TCGA-91-6829-01A-21D-1855-08	950154	28776005	214423368	210	170965											
PLB1	151056	broad.mit.edu	37	chr2	28825818	28825818	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctggctgtccccacactgGagatgccctcacctcctggt	9	17	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28825818	T	T	28825818	1	4	226	0	1	0	0	0	0	0	0	0	12119	1189	41	3		3	PLB1	2	28825818	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	49813	28825818	214373555	211	170966											
FAM179A	165186	broad.mit.edu	37	chr2	29247336	29247336	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggagggaagggtgcaGggagggagggagggaagcag	24	2	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29247336	C	C	29247336	1	2	226	0	1	0	0	0	0	0	0	0	5550	1015	35	4		4	FAM179A	2	29247336	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	421518	29247336	213952037	212	170967											
ALK	238	broad.mit.edu	37	chr2	29551274	29551274	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtggaagtcacaggcctgCccaagctggaggactgtccc	14	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29551274	G	G	29551274	2	3	226	1	0	0	0	0	0	0	0	1	525	726	26	4		4	ALK	2	29551274	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	303938	29551274	213648099	213	170968											
SLC30A6	55676	broad.mit.edu	37	chr2	32427026	32427026	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggatttaatagactttcAgatgaattctctaaatctca	6	6	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32427026	T	T	32427026	1	4	226	0	1	0	0	0	0	0	0	0	14673	203	7	5		5	SLC30A6	2	32427026	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2875752	32427026	210772347	214	170969											
BIRC6	57448	broad.mit.edu	37	chr2	32640490	32640490	+	Frame_Shift_Del	DEL	C	-	-													agaagtggaactctgtgtttCccaagcctgggactttggtt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	32640490	-	-	32640490	7	5	226	1	0	1	0	1	0	0	0	0	1444	855	30	0	2169	0	BIRC6	2	32640490	Frame_Shift_Del	DEL	C	TCGA-91-6829-01A-21D-1855-08	213464	32640490	210558883	215	170970											
TMEM178	130733	broad.mit.edu	37	chr2	39944345	39944345	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttatccgtttattagccGgaccaagattgcacagctaa	8	11	0	1	rs146286536		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39944345	A	A	39944345	3	1	226	1	0	0	0	0	1	0	0	0	16218	1116	39	4	862	4	TMEM178	2	39944345	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	7303855	39944345	203255028	216	170971											
SLC8A1	6546	broad.mit.edu	37	chr2	40656505	40656505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctccagaaccagagcacCatctaagaaattttcaacat	4	13	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40656505	A	A	40656505	3	1	226	1	0	0	0	0	1	0	0	0	14820	594	21	2	2153	2	SLC8A1	2	40656505	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	712160	40656505	202542868	217	170972											
ABCG8	64241	broad.mit.edu	37	chr2	44099310	44099310	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgactctgagaggagagctCcctgcagaaggtggctgccc	15	12	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44099310	A	A	44099310	1	1	226	0	1	0	0	0	0	0	0	0	72	870	30	3		3	ABCG8	2	44099310	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3442805	44099310	199100063	218	170973											
SRBD1	55133	broad.mit.edu	37	chr2	45829073	45829073	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaacaacgacttctgagCcatcactgatctgtggggca	9	11	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45829073	A	A	45829073	3	1	226	1	0	0	0	0	1	0	0	0	15251	739	26	3	2833	3	SRBD1	2	45829073	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1729763	45829073	197370300	219	170974											
LHCGR	3973	broad.mit.edu	37	chr2	48935983	48935983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccttttcaggtgtagagGctgatgtctcacatatcagc	10	10	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48935983	T	T	48935983	1	4	226	0	1	0	0	0	0	0	0	0	8834	1218	42	3		3	LHCGR	2	48935983	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3106910	48935983	194263390	220	170975											
FSHR	2492	broad.mit.edu	37	chr2	49190767	49190767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggttgcacataaggaacCtggggactgtgagtttatat	12	7	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49190767	A	A	49190767	3	1	226	1	0	0	0	0	1	0	0	0	6133	681	24	2	898	2	FSHR	2	49190767	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	254784	49190767	194008606	221	170976											
NRXN1	9378	broad.mit.edu	37	chr2	50149448	50149448	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagttcactgaataccagAgagctatattaacatttatt	6	6	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50149448	G	G	50149448	1	3	226	0	1	0	0	0	0	0	0	0	10760	319	11	5		5	NRXN1	2	50149448	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	958681	50149448	193049925	222	170977											
NRXN1	9378	broad.mit.edu	37	chr2	50724546	50724546	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaatccatctagggatgttGtcttgaactggaaaaaaaga	9	5	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50724546	T	T	50724546	3	4	226	1	0	0	0	0	1	0	0	0	10760	1377	48	3	2022	3	NRXN1	2	50724546	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	575098	50724546	192474827	223	170978											
NRXN1	9378	broad.mit.edu	37	chr2	50847242	50847242	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactgcctccaacatagaaaAagtcatcagaccccagcatg	7	13	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50847242	G	G	50847242	3	3	226	1	0	0	0	0	1	0	0	0	10760	14	1	5	3612	5	NRXN1	2	50847242	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	122696	50847242	192352131	224	170979											
C2orf63	130162	broad.mit.edu	37	chr2	55408941	55408941	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatagtttgctttttcttaTctcatattactatttttgtg	4	5	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55408941	A	A	55408941	1	1	226	0	1	0	0	0	0	0	0	0	2204	1450	50	5		5	C2orf63	2	55408941	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	4561699	55408941	187790432	225	170980											
VRK2	7444	broad.mit.edu	37	chr2	58366863	58366863	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atgatgaaaagccaaactatCaagccctcaagaaaattttg	6	8	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58366863	T	T	58366863	4	4	226	1	0	0	0	0	0	1	0	0	17347	827	29	4	957	4	VRK2	2	58366863	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2957922	58366863	184832510	226	170981											
AHSA2	130872	broad.mit.edu	37	chr2	61413941	61413941	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaaaatttattataaggCattactttttgtaagcggaa	6	3	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61413941	A	A	61413941	1	1	226	0	1	0	0	0	0	0	0	0	419	725	25	3		3	AHSA2	2	61413941	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	3047078	61413941	181785432	227	170982											
USP34	9736	broad.mit.edu	37	chr2	61448811	61448811	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttcagcagagaagaaacaTatattctactacacactata	4	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61448811	A	A	61448811	1	1	226	0	1	0	0	0	0	0	0	0	17192	1421	49	5		5	USP34	2	61448811	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	34870	61448811	181750562	228	170983											
BMP10	27302	broad.mit.edu	37	chr2	69098276	69098276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggctgaatcctgcgtgGggatgtcagagaggtttagt	15	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69098276	T	T	69098276	3	4	226	1	0	0	0	0	1	0	0	0	1463	1232	43	2	1067	2	BMP10	2	69098276	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	7649465	69098276	174101097	229	170984											
TIA1	7072	broad.mit.edu	37	chr2	70451749	70451749	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgttgccatgtcttttacCactcgggcatctctgaaatc	7	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70451749	A	A	70451749	2	1	226	1	0	0	0	0	0	0	0	1	16010	581	21	2		2	TIA1	2	70451749	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1353473	70451749	172747624	230	170985											
CD207	50489	broad.mit.edu	37	chr2	71060191	71060191	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaatatcatctagagaaCaagaggtaaaagtgaacgct	10	5	2	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71060191	A	A	71060191	1	1	226	0	1	0	0	0	0	0	0	0	3013	493	17	3		3	CD207	2	71060191	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	608442	71060191	172139182	231	170986											
ALMS1	7840	broad.mit.edu	37	chr2	73659341	73659341	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ataagccaacaagagagtcgGaatatcactcttcagatctc	7	10	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73659341	T	T	73659341	4	4	226	1	0	0	0	0	0	1	0	0	535	1175	41	3	1380	3	ALMS1	2	73659341	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2599150	73659341	169540032	232	170987											
ALMS1	7840	broad.mit.edu	37	chr2	73679254	73679254	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgagcaggagttgccagAtcttactgaagtaactttga	10	6	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73679254	G	G	73679254	3	3	226	1	0	0	0	0	1	0	0	0	535	333	12	5	5627	5	ALMS1	2	73679254	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	19913	73679254	169520119	233	170988											
C2orf78	388960	broad.mit.edu	37	chr2	74040583	74040583	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cactctcatcggttttttcaTctctctcttgtttcctacag	4	13	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74040583	C	C	74040583	1	2	226	0	1	0	0	0	0	0	0	0	2217	1450	50	5		5	C2orf78	2	74040583	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	361329	74040583	169158790	234	170989											
HK2	3099	broad.mit.edu	37	chr2	75108998	75108998	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacgaggtgagcagggcGgcgccttcaggagggggccc	22	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75108998	T	T	75108998	1	4	226	0	1	0	0	0	0	0	0	0	7258	1131	39	1		1	HK2	2	75108998	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1068415	75108998	168090375	235	170990											
REG3A	5068	broad.mit.edu	37	chr2	79385648	79385648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctgagggagggcagggCaaaggtaggtgggaggagga	22	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79385648	A	A	79385648	1	1	226	0	1	0	0	0	0	0	0	0	13320	725	25	3		3	REG3A	2	79385648	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4276650	79385648	163813725	236	170991											
REG3A	5068	broad.mit.edu	37	chr2	79385781	79385781	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acatctaaccactcacatctGcatctgtccaggattttggt	6	12	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79385781	A	A	79385781	3	1	226	1	0	0	0	0	1	0	0	0	13320	1319	46	4	352	4	REG3A	2	79385781	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	133	79385781	163813592	237	170992											
CTNNA2	1496	broad.mit.edu	37	chr2	80101247	80101247	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagatggcagccgcccgaGgggctctgaagaagaatgcc	15	10	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80101247	T	T	80101247	3	4	226	1	0	0	0	0	1	0	0	0	4047	1000	35	2	649	2	CTNNA2	2	80101247	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	715466	80101247	163098126	238	170993											
LRRTM1	347730	broad.mit.edu	37	chr2	80529979	80529979	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agccacgaggctagggcacaCacgttgcgcccgcaatccca	11	16	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80529979	G	G	80529979	2	3	226	1	0	0	0	0	0	0	0	1	9126	465	17	4		4	LRRTM1	2	80529979	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	428732	80529979	162669394	239	170994											
C2orf89	129293	broad.mit.edu	37	chr2	85051069	85051069	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaacccgacccagcctactCgcctgacctctcctccaggc	6	22	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85051069	G	G	85051069	1	3	226	0	1	0	0	0	0	0	0	0	2225	899	31	4		4	C2orf89	2	85051069	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4521090	85051069	158148304	240	170995											
THNSL2	55258	broad.mit.edu	37	chr2	88472942	88472942	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagcccctgccagctcagTctacagaattgtaaatccat	6	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88472942	A	A	88472942	1	1	226	0	1	0	0	0	0	0	0	0	15986	1682	58	5		5	THNSL2	2	88472942	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	3421873	88472942	154726431	241	170996											
MAL	4118	broad.mit.edu	37	chr2	95713751	95713751	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcctcctccctggtgccCtggcccctggtccagggctg	14	17	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95713751	T	T	95713751	2	4	226	1	0	0	0	0	0	0	0	1	9291	668	24	4		4	MAL	2	95713751	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	7240809	95713751	147485622	242	170997											
NCAPH	23397	broad.mit.edu	37	chr2	97007797	97007797	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttccatttaggagtattgaCatttcagctactatccccaa	5	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97007797	G	G	97007797	3	3	226	1	0	0	0	0	1	0	0	0	10304	477	17	4	292	4	NCAPH	2	97007797	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1294046	97007797	146191576	243	170998											
CNGA3	1261	broad.mit.edu	37	chr2	99008327	99008327	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccacatggcttctttagGgcctgtttcgatgagctgca	10	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99008327	T	T	99008327	3	4	226	1	0	0	0	0	1	0	0	0	3630	1246	43	2	589	2	CNGA3	2	99008327	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2000530	99008327	144191046	244	170999											
SLC9A2	6549	broad.mit.edu	37	chr2	103299840	103299840	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagcgaaaccttgatcttCatcttcatgggtgtgtctac	9	10	6	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103299840	T	T	103299840	2	4	226	1	0	0	0	0	0	0	0	1	14826	825	29	4		4	SLC9A2	2	103299840	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	4291513	103299840	139899533	245	171000											
UXS1	80146	broad.mit.edu	37	chr2	106717570	106717570	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	agccacgaggccattcactaGatcgctggaaaaaaagggga	12	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106717570	C	C	106717570	3	2	226	1	0	0	0	0	1	0	0	0	17236	933	33	4	365	4	UXS1	2	106717570	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3417730	106717570	136481803	246	171001											
RANBP2	5903	broad.mit.edu	37	chr2	109381301	109381301	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctactgtatctaggtgcAttgcgtgtcagaatacaaaa	8	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109381301	G	G	109381301	3	3	226	1	0	0	0	0	1	0	0	0	13136	217	8	5	4384	5	RANBP2	2	109381301	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	2663731	109381301	133818072	247	171002											
RANBP2	5903	broad.mit.edu	37	chr2	109388295	109388295	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcttctgctacaagaataGaccagattatgttagtgaag	8	6	2	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	109388295	C	C	109388295	3	2	226	1	0	0	0	0	1	0	0	0	13136	942	33	4	8070	4	RANBP2	2	109388295	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	6994	109388295	133811078	248	171003											
NPHP1	4867	broad.mit.edu	37	chr2	110901996	110901996	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaaacgctatgcttattaGaatgtagctacctctcagat	6	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110901996	T	T	110901996	1	4	226	0	1	0	0	0	0	0	0	0	10674	957	33	3		3	NPHP1	2	110901996	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1513701	110901996	132297377	249	171004											
ANAPC1	64682	broad.mit.edu	37	chr2	112592168	112592168	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggcagtttctaacctaCaaacaaatttaccttgccaa	4	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112592168	A	A	112592168	1	1	226	0	1	0	0	0	0	0	0	0	598	493	17	3		3	ANAPC1	2	112592168	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1690172	112592168	130607205	250	171005											
FBLN7	129804	broad.mit.edu	37	chr2	112922542	112922542	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaagggctgtggtccaggAtgaggagctcgtaatccttc	13	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112922542	T	T	112922542	1	4	226	0	1	0	0	0	0	0	0	0	5758	348	12	5		5	FBLN7	2	112922542	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	330374	112922542	130276831	251	171006											
IL1F5	26525	broad.mit.edu	37	chr2	113819695	113819695	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcatctggcctctttcCcacaggtgaagagatcagcg	10	14	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113819695	T	T	113819695	1	4	226	0	1	0	0	0	0	0	0	0	7723	638	22	4		4	IL1F5	2	113819695	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	897153	113819695	129379678	252	171007											
INSIG2	51141	broad.mit.edu	37	chr2	118864367	118864367	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacactggctgcactatccAttggactgtggtggactttt	10	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118864367	G	G	118864367	3	3	226	1	0	0	0	0	1	0	0	0	7836	217	8	5	434	5	INSIG2	2	118864367	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	5044672	118864367	124335006	253	171008											
INSIG2	51141	broad.mit.edu	37	chr2	118866015	118866015	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagttttccccttgattGgcgtgtgtgtatatatggat	11	6	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118866015	T	T	118866015	1	4	226	0	1	0	0	0	0	0	0	0	7836	1363	47	2		2	INSIG2	2	118866015	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	1648	118866015	124333358	254	171009											
MARCO	8685	broad.mit.edu	37	chr2	119739773	119739773	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccgggccctcctggtgcaGtgggacacccaggtgccaag	14	14	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	119739773	C	C	119739773	3	2	226	1	0	0	0	0	1	0	0	0	9403	1029	36	4	985	4	MARCO	2	119739773	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	873758	119739773	123459600	255	171010											
CNTNAP5	129684	broad.mit.edu	37	chr2	125282066	125282066	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaagagggaaaattaagaaGggagggaaatttaagtgggc	15	1	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125282066	T	T	125282066	1	4	226	0	1	0	0	0	0	0	0	0	3682	1015	35	2		2	CNTNAP5	2	125282066	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	5542293	125282066	117917307	256	171011											
BIN1	274	broad.mit.edu	37	chr2	127834434	127834434	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacccagggctgcaatccCagggcatggctgggtccatc	12	16	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127834434	A	A	127834434	1	1	226	0	1	0	0	0	0	0	0	0	1438	609	21	2		2	BIN1	2	127834434	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2552368	127834434	115364939	257	171012											
FAM123C	205147	broad.mit.edu	37	chr2	131520777	131520777	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccccaagagcgagcagcccGaatccgtgtccacaagtgac	10	16	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131520777	T	T	131520777	4	4	226	1	0	0	0	0	0	1	0	0	5470	1059	37	3	1134	3	FAM123C	2	131520777	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3686343	131520777	111678596	258	171013											
PLEKHB2	55041	broad.mit.edu	37	chr2	132109886	132109886	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaccgtccgagccgggaccCatcgggaagttggaccggct	15	14	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132109886	A	A	132109886	1	1	226	0	1	0	0	0	0	0	0	0	12160	609	21	2		2	PLEKHB2	2	132109886	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	589109	132109886	111089487	259	171014											
R3HDM1	23518	broad.mit.edu	37	chr2	136362452	136362452	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttactgtaaaagatgaaActgcaacaatgaaggatttg	9	5	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136362452	T	T	136362452	3	4	226	1	0	0	0	0	1	0	0	0	12995	43	2	5	39	5	R3HDM1	2	136362452	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	4252566	136362452	106836921	260	171015											
ARHGAP15	55843	broad.mit.edu	37	chr2	143913138	143913138	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacaggagctgtgcaaatgAgaatcaaaaatgccaacagc	10	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143913138	T	T	143913138	4	4	226	1	0	0	0	0	0	1	0	0	868	296	11	5	81	5	ARHGAP15	2	143913138	Nonsense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	7550686	143913138	99286235	261	171016											
ZEB2	9839	broad.mit.edu	37	chr2	145161807	145161807	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaatcactgcaatctgCtccacagagtgccatcattg	8	12	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145161807	A	A	145161807	1	1	226	0	1	0	0	0	0	0	0	0	17750	812	28	3		3	ZEB2	2	145161807	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1248669	145161807	98037566	262	171017											
ORC4L	5000	broad.mit.edu	37	chr2	148693386	148693386	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacagagtactgggaagcaaAatgtaacaacaatcaatagg	9	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148693386	T	T	148693386	1	4	226	0	1	0	0	0	0	0	0	0	11358	29	1	5		5	ORC4L	2	148693386	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3531579	148693386	94505987	263	171018											
NEB	4703	broad.mit.edu	37	chr2	152466583	152466584	+	Missense_Mutation	DNP	GG	TT	TT													gggatcatcttcaatgctctGggctccaatgtggtggcctt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	152466584	TT	TT	152466583	3	4	226	1	0	0	0	0	1	0	0	0	10397	1357	47	2	14024	2	NEB	2	152466583	Missense_Mutation	DNP	GG	TCGA-91-6829-01A-21D-1855-08	3773197	152466583	90732790	264	171019											
NEB	4703	broad.mit.edu	37	chr2	152470891	152470891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtagtctatgtcgcttaCaaggatctgacacttcttgg	9	9	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152470891	A	A	152470891	3	1	226	1	0	0	0	0	1	0	0	0	10397	478	17	3	14610	3	NEB	2	152470891	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4308	152470891	90728482	265	171020											
GPD2	2820	broad.mit.edu	37	chr2	157407299	157407299	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtcacccaaaaaagaGggtcagcagagattgtctgg	12	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157407299	T	T	157407299	1	4	226	0	1	0	0	0	0	0	0	0	6671	1015	35	2		2	GPD2	2	157407299	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	4936408	157407299	85792074	266	171021											
CYTIP	9595	broad.mit.edu	37	chr2	158300456	158300456	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgccggtgagtgtggagtaaGagctatacgctggcccagcg	16	9	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	158300456	C	C	158300456	3	2	226	1	0	0	0	0	1	0	0	0	4240	942	33	4	1034	4	CYTIP	2	158300456	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	893157	158300456	84898917	267	171022											
UPP2	151531	broad.mit.edu	37	chr2	158971591	158971591	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccagttactatggcaggcCcttgtttatttttattaaca	6	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158971591	T	T	158971591	1	4	226	0	1	0	0	0	0	0	0	0	17139	638	22	4		4	UPP2	2	158971591	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	671135	158971591	84227782	268	171023											
SCN1A	6323	broad.mit.edu	37	chr2	166856287	166856287	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccatcctttgaatgtggcCtattaagaaggacatgcatg	9	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166856287	A	A	166856287	5	1	226	1	0	0	0	0	0	0	1	0	14027	695	24	2	1765	2	SCN1A	2	166856287	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	7884696	166856287	76343086	269	171024											
SCN1A	6323	broad.mit.edu	37	chr2	166901716	166901716	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgttttcttttcttcctcCgatttcttctttccttagca	3	12	5	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166901716	T	T	166901716	3	4	226	1	0	0	0	0	1	0	0	0	14027	652	23	4	4598	4	SCN1A	2	166901716	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	45429	166901716	76297657	270	171025											
SCN9A	6335	broad.mit.edu	37	chr2	167055686	167055686	+	Silent	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agatccatggcaatgagctgGactttgttgggttttgctat	12	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167055686	C	C	167055686	2	2	226	1	0	0	0	0	0	0	0	1	14038	1161	41	4		4	SCN9A	2	167055686	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	153970	167055686	76143687	271	171026											
SCN7A	6332	broad.mit.edu	37	chr2	167284288	167284288	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtatcaaacaccctggctGcccacttaccagagtgccag	8	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	167284288	C	C	167284288	1	2	226	0	1	0	0	0	0	0	0	0	14036	1334	46	4		4	SCN7A	2	167284288	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	228602	167284288	75915085	272	171027											
XIRP2	129446	broad.mit.edu	37	chr2	168105070	168105070	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctccggaaaagcacagtGgagacttcatgcaacaatat	9	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168105070	A	A	168105070	3	1	226	1	0	0	0	0	1	0	0	0	17557	1349	47	4	7198	4	XIRP2	2	168105070	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	820782	168105070	75094303	273	171028											
MAP1D	254042	broad.mit.edu	37	chr2	172944060	172944060	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgccactggcctaggcccGgcagtccggtgaaggaccaa	13	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	172944060	A	A	172944060	1	1	226	0	1	0	0	0	0	0	0	0	9321	1131	39	4		4	MAP1D	2	172944060	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	4838990	172944060	70255313	274	171029											
DLX1	1745	broad.mit.edu	37	chr2	172952791	172952791	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agctgatgaagcagggtgggGcggctctggagggtagtgcg	21	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	172952791	C	C	172952791	3	2	226	1	0	0	0	0	1	0	0	0	4610	1203	42	4	584	4	DLX1	2	172952791	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	8731	172952791	70246582	275	171030											
ITGA6	3655	broad.mit.edu	37	chr2	173352193	173352193	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttccctgtaagtattgtTagagaccagctgagagggga	13	7	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	173352193	G	G	173352193	1	3	226	0	1	0	0	0	0	0	0	0	7950	1769	61	5		5	ITGA6	2	173352193	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	399402	173352193	69847180	276	171031											
PDK1	5163	broad.mit.edu	37	chr2	173435551	173435551	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgaggatttgactgtgaAggtaaatgtgtttaatggtt	12	1	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	173435551	T	T	173435551	3	4	226	1	0	0	0	0	1	0	0	0	11769	86	3	5	974	5	PDK1	2	173435551	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	83358	173435551	69763822	277	171032											
CDCA7	83879	broad.mit.edu	37	chr2	174228182	174228182	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttaaatataaagcaaaacAaagcaatggtaggtatctga	7	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	174228182	C	C	174228182	3	2	226	1	0	0	0	0	1	0	0	0	3120	131	5	5	627	5	CDCA7	2	174228182	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	792631	174228182	68971191	278	171033											
CHN1	1123	broad.mit.edu	37	chr2	175666637	175666637	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgataatgctctgaaacTggtaagaaatgctttctcgt	9	6	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175666637	A	A	175666637	1	1	226	0	1	0	0	0	0	0	0	0	3393	1595	55	5		5	CHN1	2	175666637	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1438455	175666637	67532736	279	171034											
ATF2	1386	broad.mit.edu	37	chr2	175976261	175976261	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acattaattcaaaacagcctCaagcaatgtacagaacaaat	4	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175976261	A	A	175976261	1	1	226	0	1	0	0	0	0	0	0	0	1084	841	29	3		3	ATF2	2	175976261	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	309624	175976261	67223112	280	171035											
HOXD12	3238	broad.mit.edu	37	chr2	176964621	176964621	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctacttctccaacctgaggcCgaatggcggccagttggccg	12	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	176964621	G	G	176964621	3	3	226	1	0	0	0	0	1	0	0	0	7388	652	23	4	94	4	HOXD12	2	176964621	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	988360	176964621	66234752	281	171036											
PDE11A	50940	broad.mit.edu	37	chr2	178562051	178562051	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtcaaacagatcaaatgccAatacctactcaaagtacagc	5	11	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178562051	T	T	178562051	1	4	226	0	1	0	0	0	0	0	0	0	11725	145	5	5		5	PDE11A	2	178562051	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1597430	178562051	64637322	282	171037											
PDE11A	50940	broad.mit.edu	37	chr2	178592285	178592285	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtaagttccaacataaaatGatcacatggtaatttttcag	7	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178592285	A	A	178592285	1	1	226	0	1	0	0	0	0	0	0	0	11725	1305	45	4		4	PDE11A	2	178592285	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	30234	178592285	64607088	283	171038											
DFNB59	494513	broad.mit.edu	37	chr2	179318348	179318349	+	Splice_Site	INS	-	T	T													gacagagaaatttcagctggINStaagtttaaatgtttgggag							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179318349	T	T	179318348	8	5	226	1	0	1	1	0	0	0	1	0	4496	1275	44	0	214	0	DFNB59	2	179318348	Splice_Site	INS	-	TCGA-91-6829-01A-21D-1855-08	726063	179318348	63881025	284	171039											
TTN	7273	broad.mit.edu	37	chr2	179391982	179391982	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggctactgttagaactttGccttcatcaatgctgatatc	7	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179391982	C	C	179391982	2	2	226	1	0	0	0	0	0	0	0	1	16861	1306	46	4		4	TTN	2	179391982	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	73634	179391982	63807391	285	171040											
TTN	7273	broad.mit.edu	37	chr2	179467007	179467007	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaactgagtaagtactagtAccttgaatatcagtggcagg	10	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179467007	G	G	179467007	5	3	226	1	0	0	0	0	0	0	1	0	16861	405	14	5	52891	5	TTN	2	179467007	Splice_Site	SNP	A	TCGA-91-6829-01A-21D-1855-08	75025	179467007	63732366	286	171041											
TTN	7273	broad.mit.edu	37	chr2	179473884	179473884	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaactttttatttttAtgttttactaaaaccttttt	1	8	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179473884	G	G	179473884	1	3	226	0	1	0	0	0	0	0	0	0	16861	464	16	5		5	TTN	2	179473884	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	6877	179473884	63725489	287	171042											
TTN	7273	broad.mit.edu	37	chr2	179528865	179528865	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacactcagaaaatacagAgattactagatagatacaaa	5	6	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179528865	G	G	179528865	1	3	226	0	1	0	0	0	0	0	0	0	16861	319	11	5		5	TTN	2	179528865	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	54981	179528865	63670508	288	171043											
TTN	7273	broad.mit.edu	37	chr2	179544303	179544304	+	Intron	DNP	CC	AT	AT													cagatgaagtctcttagataCccgtcaatgaatggtggtgt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	179544304	AT	AT	179544303	1	1	226	0	1	0	0	0	0	0	0	0	16861	522	18	3		3	TTN	2	179544303	Intron	DNP	CC	TCGA-91-6829-01A-21D-1855-08	15438	179544303	63655070	289	171044											
TTN	7273	broad.mit.edu	37	chr2	179641663	179641663	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacttcaacatttactttgCatcttgtagtgtctctgcca	5	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179641663	A	A	179641663	3	1	226	1	0	0	0	0	1	0	0	0	16861	710	25	3	106400	3	TTN	2	179641663	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	97360	179641663	63557710	290	171045											
PPP1R1C	151242	broad.mit.edu	37	chr2	182826813	182826813	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accctcaggtcctcgatggtCttgaggtaatgactccagtc	10	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182826813	A	A	182826813	1	1	226	0	1	0	0	0	0	0	0	0	12470	928	32	3		3	PPP1R1C	2	182826813	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3185150	182826813	60372560	291	171046											
NCKAP1	10787	broad.mit.edu	37	chr2	183821071	183821071	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccaccacgcccggcccggTtcattattcttaacactaat	6	15	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183821071	A	A	183821071	1	1	226	0	1	0	0	0	0	0	0	0	10316	1740	60	5		5	NCKAP1	2	183821071	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	994258	183821071	59378302	292	171047											
COL5A2	1290	broad.mit.edu	37	chr2	189915946	189915946	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattttaggaatgtgccCagcataatatttaagcattt	6	5	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	189915946	T	T	189915946	1	4	226	0	1	0	0	0	0	0	0	0	3729	609	21	4		4	COL5A2	2	189915946	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	6094875	189915946	53283427	293	171048											
DYTN	391475	broad.mit.edu	37	chr2	207569534	207569534	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtggcaaattaactgaaaCaaatgtacagttcttaagta	7	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207569534	G	G	207569534	1	3	226	0	1	0	0	0	0	0	0	0	4901	493	17	4		4	DYTN	2	207569534	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	17653588	207569534	35629839	294	171049											
C2orf67	151050	broad.mit.edu	37	chr2	210968932	210968932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaacctgaggattccCtagaatgtttagtgaagctg	13	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	210968932	A	A	210968932	3	1	226	1	0	0	0	0	1	0	0	0	2208	681	24	2	1687	2	C2orf67	2	210968932	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3399398	210968932	32230441	295	171050											
CPS1	1373	broad.mit.edu	37	chr2	211542680	211542680	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagagtcttttccactacAggcagtacagtgctggaaaa	9	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211542680	G	G	211542680	3	3	226	1	0	0	0	0	1	0	0	0	3855	179	7	5	4646	5	CPS1	2	211542680	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	573748	211542680	31656693	296	171051											
ERBB4	2066	broad.mit.edu	37	chr2	212568770	212568770	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatagttttgacttaatgCacacacaatgctcctcttga	7	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	212568770	T	T	212568770	1	4	226	0	1	0	0	0	0	0	0	0	5251	725	25	4		4	ERBB4	2	212568770	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1026090	212568770	30630603	297	171052											
SPEG	10290	broad.mit.edu	37	chr2	220355136	220355136	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccccgacacacaggggccGctttggtgttgtgcgagcgt	14	14	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	220355136	C	C	220355136	3	2	226	1	0	0	0	0	1	0	0	0	15154	1087	38	4	9085	4	SPEG	2	220355136	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	7786366	220355136	22844237	298	171053											
OBSL1	23363	broad.mit.edu	37	chr2	220424202	220424202	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacctcatcgcgagggtataTgatccgcactgggggttctg	13	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220424202	A	A	220424202	3	1	226	1	0	0	0	0	1	0	0	0	10908	1464	51	5	2794	5	OBSL1	2	220424202	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	69066	220424202	22775171	299	171054											
SLC4A3	6508	broad.mit.edu	37	chr2	220502245	220502245	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcacaggtgtactgatgacGatgaagtcaggtcacctgcc	11	11	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220502245	T	T	220502245	1	4	226	0	1	0	0	0	0	0	0	0	14769	1073	37	3		3	SLC4A3	2	220502245	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	78043	220502245	22697128	300	171055											
SCG2	7857	broad.mit.edu	37	chr2	224463114	224463114	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggtctttactctctttcCgaagatcttcttcctggatg	8	10	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	224463114	A	A	224463114	3	1	226	1	0	0	0	0	1	0	0	0	14003	652	23	1	970	1	SCG2	2	224463114	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3960869	224463114	18736259	301	171056											
TRIP12	9320	broad.mit.edu	37	chr2	230667127	230667127	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatgcctttggtggacttGtcaacaaagactctgattct	8	9	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230667127	A	A	230667127	3	1	226	1	0	0	0	0	1	0	0	0	16681	1377	48	4	3244	4	TRIP12	2	230667127	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	6204013	230667127	12532246	302	171057											
SP110	3431	broad.mit.edu	37	chr2	231067407	231067407	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaacctgatccacccttttGagcttcttttggattccgtg	9	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	231067407	C	C	231067407	2	2	226	1	0	0	0	0	0	0	0	1	15075	1277	45	4		4	SP110	2	231067407	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	400280	231067407	12131966	303	171058											
CHRNG	1146	broad.mit.edu	37	chr2	233406047	233406047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtgtcgggggctgagcCcacagcctcgtggcctggcc	18	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233406047	A	A	233406047	1	1	226	0	1	0	0	0	0	0	0	0	3427	638	22	2		2	CHRNG	2	233406047	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2338640	233406047	9793326	304	171059											
GIGYF2	26058	broad.mit.edu	37	chr2	233621023	233621023	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggtgggggctcctagaggtCgaagttcttcaagagggcga	17	7	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233621023	A	A	233621023	2	1	226	1	0	0	0	0	0	0	0	1	6442	876	31	3		3	GIGYF2	2	233621023	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	214976	233621023	9578350	305	171060											
NGEF	25791	broad.mit.edu	37	chr2	233745956	233745956	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacgcactggacctggggGcagtctgagggacaagaggc	17	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233745956	T	T	233745956	4	4	226	1	0	0	0	0	0	1	0	0	10489	1195	42	3	298	3	NGEF	2	233745956	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	124933	233745956	9453417	306	171061											
NGEF	25791	broad.mit.edu	37	chr2	233839311	233839311	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggatgtaagggaacagccgtGacagctgtccctgatactga	13	9	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	233839311	A	A	233839311	1	1	226	0	1	0	0	0	0	0	0	0	10489	1305	45	4		4	NGEF	2	233839311	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	93355	233839311	9360062	307	171062											
ATG16L1	55054	broad.mit.edu	37	chr2	234184287	234184287	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaagagagttccgctttggAggaggagttgggatggggcg	19	4	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	234184287	T	T	234184287	1	4	226	0	1	0	0	0	0	0	0	0	1095	319	11	5		5	ATG16L1	2	234184287	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	344976	234184287	9015086	308	171063											
IQCA1	79781	broad.mit.edu	37	chr2	237415979	237415979	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctctctgaaggacggtggCagcaggggtcagggcactac	16	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	237415979	T	T	237415979	1	4	226	0	1	0	0	0	0	0	0	0	7872	725	25	4		4	IQCA1	2	237415979	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	3231692	237415979	5783394	309	171064											
OR6B2	389090	broad.mit.edu	37	chr2	240969859	240969859	+	5'UTR	DEL	G	-	-													ccactcatgcctctgtgcttGggagctgcaggcctacaaaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	240969859	-	-	240969859	6	5	226	0	1	1	0	1	0	0	0	0	11282	1363	47	0		0	OR6B2	2	240969859	5'UTR	DEL	G	TCGA-91-6829-01A-21D-1855-08	3553880	240969859	2229514	310	171065											
CPNE9	151835	broad.mit.edu	37	chr3	9768831	9768831	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggtgatgatgtgcgcgtGtcctctaggggacgctacgc	16	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9768831	T	T	9768831	2	4	226	1	0	0	0	0	0	0	0	1	3851	1364	48	3		3	CPNE9	3	9768831	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08		9768831	188253599	311	171066											
CAND2	23066	broad.mit.edu	37	chr3	12856744	12856745	+	Missense_Mutation	DNP	CC	AA	AA													gctcgcggcctgacctgctgCccgatttccactgcaccctg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	12856745	AA	AA	12856744	3	1	226	1	0	0	0	0	1	0	0	0	2642	739	26	3	1141	3	CAND2	3	12856744	Missense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	3087913	12856744	185165686	312	171067											
IQSEC1	9922	broad.mit.edu	37	chr3	12983333	12983333	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggctgtccagggatgtgCcagtctcactgctgggggcc	17	11	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12983333	A	A	12983333	3	1	226	1	0	0	0	0	1	0	0	0	7887	739	26	3	3390	3	IQSEC1	3	12983333	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	126589	12983333	185039097	313	171068											
FGD5	152273	broad.mit.edu	37	chr3	14922148	14922148	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagagaaagcgtgagtccccAaggagctgcctgtggccttg	14	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14922148	T	T	14922148	1	4	226	0	1	0	0	0	0	0	0	0	5893	145	5	5		5	FGD5	3	14922148	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1938815	14922148	183100282	314	171069											
ANKRD28	23243	broad.mit.edu	37	chr3	15749407	15749407	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatagaaatattgatcctcCactctcactcctatggtact	4	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15749407	A	A	15749407	1	1	226	0	1	0	0	0	0	0	0	0	656	609	21	2		2	ANKRD28	3	15749407	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	827259	15749407	182273023	315	171070											
NGLY1	55768	broad.mit.edu	37	chr3	25791399	25791399	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagtagacagctcatgtGcatgttttgtgtttaaataa	9	4	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25791399	T	T	25791399	1	4	226	0	1	0	0	0	0	0	0	0	10493	1334	46	3		3	NGLY1	3	25791399	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	10041992	25791399	172231031	316	171071											
GADL1	339896	broad.mit.edu	37	chr3	30819856	30819856	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagctagtttcttcaagagtTatcatgtgtataaaatttta	6	4	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30819856	A	A	30819856	1	1	226	0	1	0	0	0	0	0	0	0	6245	1769	61	5		5	GADL1	3	30819856	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	5028457	30819856	167202574	317	171072											
CLASP2	23122	broad.mit.edu	37	chr3	33626403	33626403	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctggagacccagacCggctaccagctgaacaccaa	8	16	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33626403	A	A	33626403	3	1	226	1	0	0	0	0	1	0	0	0	3486	652	23	1	2510	1	CLASP2	3	33626403	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2806547	33626403	164396027	318	171073											
DCLK3	85443	broad.mit.edu	37	chr3	36779284	36779284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tccttctcttctcctcgggtCctgcggagcttctcaaagcc	8	16	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36779284	A	A	36779284	3	1	226	1	0	0	0	0	1	0	0	0	4326	854	30	3	1095	3	DCLK3	3	36779284	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3152881	36779284	161243146	319	171074											
DLEC1	9940	broad.mit.edu	37	chr3	38126681	38126681	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacagagccagccctggcaGggctggggtctgtaccagct	14	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38126681	C	C	38126681	1	2	226	0	1	0	0	0	0	0	0	0	4592	1015	35	4		4	DLEC1	3	38126681	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1347397	38126681	159895749	320	171075											
SCN5A	6331	broad.mit.edu	37	chr3	38664016	38664016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagctgagcagcatgggcCggccacgccaccaccgctgg	14	15	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38664016	A	A	38664016	1	1	226	0	1	0	0	0	0	0	0	0	14035	667	23	1		1	SCN5A	3	38664016	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	537335	38664016	159358414	321	171076											
CX3CR1	1524	broad.mit.edu	37	chr3	39307550	39307550	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgcccagacgcctaGgctgatggtgacgccatgct	14	13	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39307550	C	C	39307550	3	2	226	1	0	0	0	0	1	0	0	0	4108	991	35	4	620	4	CX3CR1	3	39307550	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	643534	39307550	158714880	322	171077											
CX3CR1	1524	broad.mit.edu	37	chr3	39307625	39307625	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacgatggccaggtacctatCaatgctgatgacggtgatga	13	8	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39307625	A	A	39307625	3	1	226	1	0	0	0	0	1	0	0	0	4108	826	29	3	695	3	CX3CR1	3	39307625	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	75	39307625	158714805	323	171078											
ANO10	55129	broad.mit.edu	37	chr3	43618386	43618386	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagaggcagaggcacacgaaTggcagggagaccaggtaaat	15	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43618386	A	A	43618386	2	1	226	1	0	0	0	0	0	0	0	1	696	1451	51	5		5	ANO10	3	43618386	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	4310761	43618386	154404044	324	171079											
ZNF502	91392	broad.mit.edu	37	chr3	44764010	44764010	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatctgactgggagtagagGggcaggtagagttcctggag	18	5	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44764010	T	T	44764010	1	4	226	0	1	0	0	0	0	0	0	0	18077	1247	43	2		2	ZNF502	3	44764010	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	1145624	44764010	153258420	325	171080											
LARS2	23395	broad.mit.edu	37	chr3	45500206	45500206	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagagtactcaccagatTgtgccattttgtttcatgaa	7	7	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45500206	A	A	45500206	1	1	226	0	1	0	0	0	0	0	0	0	8707	1827	63	5		5	LARS2	3	45500206	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	736196	45500206	152522224	326	171081											
RTP3	83597	broad.mit.edu	37	chr3	46541811	46541811	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccccgtgatttggtcacaTggagccaggctgagactctc	11	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46541811	C	C	46541811	1	2	226	0	1	0	0	0	0	0	0	0	13846	1479	51	5		5	RTP3	3	46541811	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1041605	46541811	151480619	327	171082											
RAD54L2	23132	broad.mit.edu	37	chr3	51696623	51696624	+	Missense_Mutation	DNP	CA	AC	AC													tcccgtcagagctccccaagCaccaatgccgccctgcctgg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AC	51696624	AC	AC	51696623	3	1	226	1	0	0	0	0	1	0	0	0	13102	709	25	3	3673	3	RAD54L2	3	51696623	Missense_Mutation	DNP	CA	TCGA-91-6829-01A-21D-1855-08	5154812	51696623	146325807	328	171083											
GRM2	2912	broad.mit.edu	37	chr3	51752241	51752241	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataatttattacccaccctaTgtctgcccccaaagtcactt	3	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51752241	C	C	51752241	1	2	226	0	1	0	0	0	0	0	0	0	6863	1479	51	5		5	GRM2	3	51752241	3'UTR	SNP	T	TCGA-91-6829-01A-21D-1855-08	55618	51752241	146270189	329	171084											
IQCF1	132141	broad.mit.edu	37	chr3	51937335	51937335	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttcaaatcccctcacatcTgtgttcatccagccatagca	6	14	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51937335	A	A	51937335	1	1	226	0	1	0	0	0	0	0	0	0	7877	1595	55	5		5	IQCF1	3	51937335	5'UTR	SNP	T	TCGA-91-6829-01A-21D-1855-08	185094	51937335	146085095	330	171085											
DUSP7	1849	broad.mit.edu	37	chr3	52088240	52088240	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcactgctgggcagctctCggtccgactcgccgtcggag	15	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52088240	T	T	52088240	3	4	226	1	0	0	0	0	1	0	0	0	4870	884	31	4	599	4	DUSP7	3	52088240	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	150905	52088240	145934190	331	171086											
PXK	54899	broad.mit.edu	37	chr3	58368341	58368341	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcttcagaactatctcaAcgtgatcacaacaaatcata	5	10	5	2	rs144000489		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58368341	G	G	58368341	3	3	226	1	0	0	0	0	1	0	0	0	12957	43	2	5	316	5	PXK	3	58368341	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	6280101	58368341	139654089	332	171087											
PXK	54899	broad.mit.edu	37	chr3	58385174	58385174	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaccactgtgtccaagcAcctggtactgtagtaaagat	9	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58385174	G	G	58385174	1	3	226	0	1	0	0	0	0	0	0	0	12957	174	6	5		5	PXK	3	58385174	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	16833	58385174	139637256	333	171088											
MAGI1	9223	broad.mit.edu	37	chr3	65367627	65367627	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgcataagctggaccaCaagctggtgtgattttccaa	10	8	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65367627	G	G	65367627	3	3	226	1	0	0	0	0	1	0	0	0	9282	478	17	4	1940	4	MAGI1	3	65367627	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	6982453	65367627	132654803	334	171089											
EPHA3	2042	broad.mit.edu	37	chr3	89445102	89445102	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggactacgaggtcaaataCtatgaaaaggtggggaaaca	12	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89445102	A	A	89445102	4	1	226	1	0	0	0	0	0	1	0	0	5210	576	20	3	1444	3	EPHA3	3	89445102	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	24077475	89445102	108577328	335	171090											
EPHA3	2042	broad.mit.edu	37	chr3	89498255	89498255	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaaaatgtttcacagaaaTgcatattccatttcagaaca	4	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89498255	A	A	89498255	1	1	226	0	1	0	0	0	0	0	0	0	5210	1479	51	5		5	EPHA3	3	89498255	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	53153	89498255	108524175	336	171091											
EPHA6	285220	broad.mit.edu	37	chr3	97185205	97185205	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcctgcatcgccctgccCcatatcagcatttacatcca	5	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97185205	A	A	97185205	1	1	226	0	1	0	0	0	0	0	0	0	5213	638	22	2		2	EPHA6	3	97185205	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	7686950	97185205	100837225	337	171092											
OR5AC2	81050	broad.mit.edu	37	chr3	97806523	97806523	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttactattgcgactaacTttctgcaggtttaacataat	6	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97806523	G	G	97806523	2	3	226	1	0	0	0	0	0	0	0	1	11235	1596	56	5		5	OR5AC2	3	97806523	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	621318	97806523	100215907	338	171093											
OR5H1	26341	broad.mit.edu	37	chr3	97852015	97852015	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtattcttcatgctttaatCcatgaaggatttttattcag	7	6	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97852015	A	A	97852015	2	1	226	1	0	0	0	0	0	0	0	1	11253	845	30	3		3	OR5H1	3	97852015	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	45492	97852015	100170415	339	171094											
OR5K2	402135	broad.mit.edu	37	chr3	98217388	98217388	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttcccttactaaatcctttCatttatagtctgagaaacaa	4	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98217388	A	A	98217388	3	1	226	1	0	0	0	0	1	0	0	0	11261	825	29	3	866	3	OR5K2	3	98217388	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	365373	98217388	99805042	340	171095											
ABI3BP	25890	broad.mit.edu	37	chr3	100605099	100605099	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttccacaattgtttcaGtggctggacagatttgaaaa	10	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100605099	T	T	100605099	3	4	226	1	0	0	0	0	1	0	0	0	91	1029	36	3	2800	3	ABI3BP	3	100605099	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2387711	100605099	97417331	341	171096											
IMPG2	50939	broad.mit.edu	37	chr3	100950072	100950072	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaaccttctgagggactaGaggaaagtagagaaataaat	11	5	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100950072	C	C	100950072	1	2	226	0	1	0	0	0	0	0	0	0	7799	957	33	4		4	IMPG2	3	100950072	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	344973	100950072	97072358	342	171097											
RG9MTD1	54931	broad.mit.edu	37	chr3	101284693	101284693	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatctcaccttagatcaaatGatacgtattttgttatgtct	5	7	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101284693	T	T	101284693	3	4	226	1	0	0	0	0	1	0	0	0	13379	1290	45	3	1070	3	RG9MTD1	3	101284693	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	334621	101284693	96737737	343	171098											
ZBTB11	27107	broad.mit.edu	37	chr3	101370066	101370066	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacagtttgaatagcttctgCaacttcagatagcttctgtc	7	9	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101370066	A	A	101370066	3	1	226	1	0	0	0	0	1	0	0	0	17650	710	25	3	59	3	ZBTB11	3	101370066	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	85373	101370066	96652364	344	171099											
MYH15	22989	broad.mit.edu	37	chr3	108188944	108188944	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaaagccaatagacaccCattcaatgctttctttctta	4	12	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108188944	A	A	108188944	3	1	226	1	0	0	0	0	1	0	0	0	10128	595	21	2	4393	2	MYH15	3	108188944	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	6818878	108188944	89833486	345	171100											
CD200	4345	broad.mit.edu	37	chr3	112063765	112063765	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcaggaaaaagtgtatgtGtgttacaatctttaaatata	7	3	2	0	rs115358071	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112063765	T	T	112063765	1	4	226	0	1	0	0	0	0	0	0	0	3010	1392	48	3		3	CD200	3	112063765	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3874821	112063765	85958665	346	171101											
ZNF80	7634	broad.mit.edu	37	chr3	113955154	113955154	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgggcaaaagcagagtgGtagccaaagtcctttctatg	12	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113955154	A	A	113955154	2	1	226	1	0	0	0	0	0	0	0	1	18297	1256	44	4		4	ZNF80	3	113955154	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	1891389	113955154	84067276	347	171102											
STXBP5L	9515	broad.mit.edu	37	chr3	120941724	120941724	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgagaaattttgagccggGcaagttttttgctgtctgtc	11	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120941724	T	T	120941724	1	4	226	0	1	0	0	0	0	0	0	0	15475	1218	42	3		3	STXBP5L	3	120941724	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6986570	120941724	77080706	348	171103											
KIAA1257	57501	broad.mit.edu	37	chr3	128697124	128697124	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttggagacactgggcgttCggtttcagactacactaaag	11	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128697124	A	A	128697124	1	1	226	0	1	0	0	0	0	0	0	0	8288	899	31	3		3	KIAA1257	3	128697124	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	7755400	128697124	69325306	349	171104											
CPNE4	131034	broad.mit.edu	37	chr3	131300383	131300383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcttcctctcagatagcCctagcttcatactcctggaa	5	14	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131300383	A	A	131300383	1	1	226	0	1	0	0	0	0	0	0	0	3846	638	22	2		2	CPNE4	3	131300383	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2603259	131300383	66722047	350	171105											
ACPP	55	broad.mit.edu	37	chr3	132056327	132056327	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcctttcaggaactgcCctcgttttcaagaacttgag	8	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132056327	T	T	132056327	3	4	226	1	0	0	0	0	1	0	0	0	167	623	22	4	502	4	ACPP	3	132056327	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	755944	132056327	65966103	351	171106											
BFSP2	8419	broad.mit.edu	37	chr3	133166080	133166080	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtcccccagagcctctGtgcctaacacaagtcatggt	10	13	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133166080	T	T	133166080	1	4	226	0	1	0	0	0	0	0	0	0	1422	1392	48	3		3	BFSP2	3	133166080	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1109753	133166080	64856350	352	171107											
SLCO2A1	6578	broad.mit.edu	37	chr3	133672506	133672506	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcctctgcacatactcaCctgtgttgaccctgccatag	8	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133672506	A	A	133672506	5	1	226	1	0	0	0	0	0	0	1	0	14840	521	18	3	1246	3	SLCO2A1	3	133672506	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	506426	133672506	64349924	353	171108											
STAG1	10274	broad.mit.edu	37	chr3	136078061	136078061	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaagggcaaagcgacgtgcCagttctttaatgccactgac	11	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136078061	T	T	136078061	2	4	226	1	0	0	0	0	0	0	0	1	15360	581	21	4		4	STAG1	3	136078061	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	2405555	136078061	61944369	354	171109											
ATR	545	broad.mit.edu	37	chr3	142224081	142224081	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttcttttagagatggtTctgcctttctaattgcactg	8	8	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142224081	G	G	142224081	3	3	226	1	0	0	0	0	1	0	0	0	1208	1783	62	5	2914	5	ATR	3	142224081	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	6146020	142224081	55798349	355	171110											
SLC9A9	285195	broad.mit.edu	37	chr3	143271264	143271264	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	taggtataatgtgcttgtgtGactccacagaagagaacagc	11	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143271264	T	T	143271264	2	4	226	1	0	0	0	0	0	0	0	1	14835	1277	45	3		3	SLC9A9	3	143271264	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	1047183	143271264	54751166	356	171111											
PLSCR4	57088	broad.mit.edu	37	chr3	145912119	145912119	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaatacacttgcaaatAactgagtgctgactgtaagc	8	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145912119	T	T	145912119	1	4	226	0	1	0	0	0	0	0	0	0	12207	377	13	5		5	PLSCR4	3	145912119	3'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	2640855	145912119	52110311	357	171112											
CP	1356	broad.mit.edu	37	chr3	148919898	148919898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagaactcacccaggatgcCaagatgctcttcttcagggc	9	13	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148919898	A	A	148919898	3	1	226	1	0	0	0	0	1	0	0	0	3819	594	21	2	1910	2	CP	3	148919898	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3007779	148919898	49102532	358	171113											
TMEM14E	645843	broad.mit.edu	37	chr3	152058724	152058724	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taattctctccagacaggagActgcagcaggcctgcaccta	9	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152058724	G	G	152058724	1	3	226	0	1	0	0	0	0	0	0	0	16189	290	10	5		5	TMEM14E	3	152058724	5'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	3138826	152058724	45963706	359	171114											
SI	6476	broad.mit.edu	37	chr3	164751121	164751121	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccaaaaaatttatcataAaagaataacctaggcatgaa	4	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	164751121	G	G	164751121	1	3	226	0	1	0	0	0	0	0	0	0	14410	29	1	5		5	SI	3	164751121	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	12692397	164751121	33271309	360	171115											
GOLIM4	27333	broad.mit.edu	37	chr3	167728113	167728113	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcagccccgtcttcttcctCctcttcttcctcctcgtagt	5	18	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167728113	A	A	167728113	4	1	226	1	0	0	0	0	0	1	0	0	6630	864	30	3	59	3	GOLIM4	3	167728113	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2976992	167728113	30294317	361	171116											
GOLIM4	27333	broad.mit.edu	37	chr3	167764826	167764826	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaacagtgataattcaCtacacagattttaaacatct	3	7	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167764826	G	G	167764826	1	3	226	0	1	0	0	0	0	0	0	0	6630	580	20	4		4	GOLIM4	3	167764826	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	36713	167764826	30257604	362	171117											
MECOM	2122	broad.mit.edu	37	chr3	168830606	168830606	+	Missense_Mutation	SNP	C	A	A													acaagaatcctggagaaggcCtcaagtatttctcttttaaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168830606	A	A	168830606	3	1	226	1	0	0	0	0	1	0	0	0	9515	681	24	2	1209	2	MECOM	3	168830606	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1065780	168830606	29191824	363	171118	709	2									
MECOM	2122	broad.mit.edu	37	chr3	168830608	168830608	+	Missense_Mutation	SNP	C	A	A													aagaatcctggagaaggcctCaagtatttctcttttaaagc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168830608	A	A	168830608	3	1	226	1	0	0	0	0	1	0	0	0	9515	825	29	3	1211	3	MECOM	3	168830608	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2	168830608	29191822	364	171119	709	2									
MYNN	55892	broad.mit.edu	37	chr3	169502546	169502546	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttgttttaatttggtgctCatattagtgctattccttaa	7	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169502546	T	T	169502546	1	4	226	0	1	0	0	0	0	0	0	0	10155	841	29	4		4	MYNN	3	169502546	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	671938	169502546	28519884	365	171120											
MRPL47	57129	broad.mit.edu	37	chr3	179322481	179322481	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggcgtctcaagccggcgGtgaggagaatagaaaacttg	14	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179322481	T	T	179322481	1	4	226	0	1	0	0	0	0	0	0	0	9905	1276	44	3		3	MRPL47	3	179322481	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	9819935	179322481	18699949	366	171121											
PEX5L	51555	broad.mit.edu	37	chr3	179576808	179576808	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gatttttcaaatgccactctCaggagcatgaaacagaaaaa	7	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179576808	T	T	179576808	1	4	226	0	1	0	0	0	0	0	0	0	11844	841	29	4		4	PEX5L	3	179576808	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	254327	179576808	18445622	367	171122											
TTC14	151613	broad.mit.edu	37	chr3	180319983	180319983	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttcctgtaccacccggCtcaagtagcggacacggaac	10	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180319983	A	A	180319983	1	1	226	0	1	0	0	0	0	0	0	0	16807	812	28	3		3	TTC14	3	180319983	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	743175	180319983	17702447	368	171123											
MCCC1	56922	broad.mit.edu	37	chr3	182775145	182775145	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtcgcctctgcacactaCagtctctttcaaacaagtac	6	13	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182775145	A	A	182775145	3	1	226	1	0	0	0	0	1	0	0	0	9467	478	17	3	1398	3	MCCC1	3	182775145	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2455162	182775145	15247285	369	171124											
HTR3E	285242	broad.mit.edu	37	chr3	183818183	183818183	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagctttcattttatcacGggcgaccccacgccctgcct	8	15	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183818183	T	T	183818183	1	4	226	0	1	0	0	0	0	0	0	0	7518	1116	39	1		1	HTR3E	3	183818183	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1043038	183818183	14204247	370	171125											
EIF4G1	1981	broad.mit.edu	37	chr3	184040602	184040602	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattgcttcattctgttttcCttgcagatcagtggaagcct	9	9	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184040602	T	T	184040602	1	4	226	0	1	0	0	0	0	0	0	0	5078	696	24	4		4	EIF4G1	3	184040602	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	222419	184040602	13981828	371	171126											
CHRD	8646	broad.mit.edu	37	chr3	184103044	184103044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtaaggatgtgatggtaGgcggcagcttggaacatttc	16	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184103044	T	T	184103044	1	4	226	0	1	0	0	0	0	0	0	0	3403	1015	35	2		2	CHRD	3	184103044	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	62442	184103044	13919386	372	171127											
CHRD	8646	broad.mit.edu	37	chr3	184105191	184105191	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatggtgaccggagctggCgggcagcgggtacgcggtgg	21	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184105191	A	A	184105191	2	1	226	1	0	0	0	0	0	0	0	1	3403	759	27	3		3	CHRD	3	184105191	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	2147	184105191	13917239	373	171128											
HRG	3273	broad.mit.edu	37	chr3	186390690	186390690	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtctgtgatcgttgactaGagtcacagagaaaaaagaaa	10	5	2	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186390690	C	C	186390690	1	2	226	0	1	0	0	0	0	0	0	0	7421	957	33	4		4	HRG	3	186390690	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2285499	186390690	11631740	374	171129											
ATP13A5	344905	broad.mit.edu	37	chr3	193052754	193052754	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcgtacaggcccctgccCagagggcttgacctggataa	12	13	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193052754	A	A	193052754	3	1	226	1	0	0	0	0	1	0	0	0	1131	594	21	2	2660	2	ATP13A5	3	193052754	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	6662064	193052754	4969676	375	171130											
LRRC15	131578	broad.mit.edu	37	chr3	194081122	194081122	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggttaacaagcccatcAaaagtgcccatggggatatc	10	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	194081122	G	G	194081122	2	3	226	1	0	0	0	0	0	0	0	1	9057	127	5	5		5	LRRC15	3	194081122	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	1028368	194081122	3941308	376	171131											
RNF168	165918	broad.mit.edu	37	chr3	196201994	196201994	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaggactcagacagggtgTttgattaactataggggctt	13	5	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196201994	A	A	196201994	1	1	226	0	1	0	0	0	0	0	0	0	13570	1740	60	5		5	RNF168	3	196201994	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2120872	196201994	1820436	377	171132											
C3orf43	255798	broad.mit.edu	37	chr3	196236314	196236314	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cattgtgggaaacatactaaGaaattcaattttgcaatgac	7	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196236314	A	A	196236314	1	1	226	0	1	0	0	0	0	0	0	0	2252	957	33	4		4	C3orf43	3	196236314	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	34320	196236314	1786116	378	171133											
LMLN	89782	broad.mit.edu	37	chr3	197703559	197703559	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacacacaaagtgcggcccCgttattgttcctgaggaaca	10	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197703559	A	A	197703559	2	1	226	1	0	0	0	0	0	0	0	1	8921	639	23	1		1	LMLN	3	197703559	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1467245	197703559	318871	379	171134											
ZNF595	152687	broad.mit.edu	37	chr4	64840	64840	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagtgtgtacaactggcCatggactgtggctgtgagag	15	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64840	A	A	64840	1	1	226	0	1	0	0	0	0	0	0	0	18152	609	21	2		2	ZNF595	4	64840	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08		64840	191089436	380	171135											
ZNF718	255403	broad.mit.edu	37	chr4	106061	106061	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggttctctactcttcctAgaagcagacagcagcagtga	10	10	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106061	T	T	106061	1	4	226	0	1	0	0	0	0	0	0	0	18248	435	15	5		5	ZNF718	4	106061	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	41221	106061	191048215	381	171136											
RNF212	285498	broad.mit.edu	37	chr4	1073435	1073435	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagagatgcacttacttttCtaatcggagaaggagagaga	13	5	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1073435	A	A	1073435	3	1	226	1	0	0	0	0	1	0	0	0	13587	913	32	3	399	3	RNF212	4	1073435	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	967374	1073435	190080841	382	171137											
SPON2	10417	broad.mit.edu	37	chr4	1165500	1165500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaccgcacaccgcaggcGctcggcaaacattctggtgt	12	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1165500	T	T	1165500	1	4	226	0	1	0	0	0	0	0	0	0	15201	1102	38	3		3	SPON2	4	1165500	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	92065	1165500	189988776	383	171138											
FAM53A	152877	broad.mit.edu	37	chr4	1643442	1643442	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggggctctggccatccccAagaccacacaaagcaggggc	12	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1643442	G	G	1643442	1	3	226	0	1	0	0	0	0	0	0	0	5630	145	5	5		5	FAM53A	4	1643442	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	477942	1643442	189510834	384	171139											
HTT	3064	broad.mit.edu	37	chr4	3176790	3176790	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttagatttgctggcgcagCtggttcagttacgggttaat	12	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3176790	T	T	3176790	2	4	226	1	0	0	0	0	0	0	0	1	7527	796	28	4		4	HTT	4	3176790	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1533348	3176790	187977486	385	171140											
RGS12	6002	broad.mit.edu	37	chr4	3441279	3441279	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcgggatggtggcatagcGggggcacaggctggccctgg	22	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3441279	C	C	3441279	2	2	226	1	0	0	0	0	0	0	0	1	13404	1103	39	4		4	RGS12	4	3441279	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	264489	3441279	187712997	386	171141											
OTOP1	133060	broad.mit.edu	37	chr4	4190608	4190608	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaaggcatggccaggttGaccacaattatccagggttc	11	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4190608	T	T	4190608	2	4	226	1	0	0	0	0	0	0	0	1	11399	1277	45	3		3	OTOP1	4	4190608	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	749329	4190608	186963668	387	171142											
D4S234E	27065	broad.mit.edu	37	chr4	4393355	4393355	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtgagatgctgcttttgCccccagaaggggtctgctga	15	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4393355	T	T	4393355	1	4	226	0	1	0	0	0	0	0	0	0	4247	754	26	4		4	D4S234E	4	4393355	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	202747	4393355	186760921	388	171143											
STK32B	55351	broad.mit.edu	37	chr4	5141635	5141635	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttcttttgcagtcaActttgaccattttcagattc	5	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5141635	T	T	5141635	3	4	226	1	0	0	0	0	1	0	0	0	15416	43	2	5	62	5	STK32B	4	5141635	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	748280	5141635	186012641	389	171144											
EVC2	132884	broad.mit.edu	37	chr4	5624461	5624461	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcaggaagagccagggCaccccacgcttgagcagctc	13	14	0	2	rs139936564	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5624461	A	A	5624461	2	1	226	1	0	0	0	0	0	0	0	1	5328	697	25	3		3	EVC2	4	5624461	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	482826	5624461	185529815	390	171145											
JAKMIP1	152789	broad.mit.edu	37	chr4	6051523	6051523	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaacaagaacacgaaagcAgaaaccgatcgctcatagtt	7	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6051523	G	G	6051523	1	3	226	0	1	0	0	0	0	0	0	0	8010	203	7	5		5	JAKMIP1	4	6051523	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	427062	6051523	185102753	391	171146											
MAN2B2	23324	broad.mit.edu	37	chr4	6578375	6578375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggcccgcggccagcagcGccggttcatcgctgtggagc	16	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6578375	T	T	6578375	3	4	226	1	0	0	0	0	1	0	0	0	9309	1087	38	3	215	3	MAN2B2	4	6578375	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	526852	6578375	184575901	392	171147											
HTRA3	94031	broad.mit.edu	37	chr4	8306011	8306011	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attcaccttctcagaggtagGctctgccagaggagatcgct	11	11	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8306011	C	C	8306011	1	2	226	0	1	0	0	0	0	0	0	0	7525	1218	42	4		4	HTRA3	4	8306011	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1727636	8306011	182848265	393	171148											
WDR1	9948	broad.mit.edu	37	chr4	10079225	10079225	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcaaacccactgactcctCagaagcatggcacgaggcac	9	15	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10079225	T	T	10079225	1	4	226	0	1	0	0	0	0	0	0	0	17399	841	29	4		4	WDR1	4	10079225	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1773214	10079225	181075051	394	171149											
CLNK	116449	broad.mit.edu	37	chr4	10543799	10543799	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatatttttctagagatatCtgagtttttgcatcatctat	5	6	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10543799	A	A	10543799	1	1	226	0	1	0	0	0	0	0	0	0	3579	928	32	3		3	CLNK	4	10543799	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	464574	10543799	180610477	395	171150											
CLNK	116449	broad.mit.edu	37	chr4	10567780	10567780	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagtttctttcctaagCaggtggtaacattccagtga	9	8	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10567780	G	G	10567780	1	3	226	0	1	0	0	0	0	0	0	0	3579	725	25	4		4	CLNK	4	10567780	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	23981	10567780	180586496	396	171151											
CLNK	116449	broad.mit.edu	37	chr4	10567877	10567877	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtagaccttcttagctgcAagttaaatatttaagaatct	8	6	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10567877	T	T	10567877	1	4	226	0	1	0	0	0	0	0	0	0	3579	145	5	5		5	CLNK	4	10567877	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	97	10567877	180586399	397	171152											
LDB2	9079	broad.mit.edu	37	chr4	16513703	16513703	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtctcgacatcagttcctGcattggctccaatattacac	6	12	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16513703	C	C	16513703	3	2	226	1	0	0	0	0	1	0	0	0	8768	1328	46	4	602	4	LDB2	4	16513703	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	5945826	16513703	174640573	398	171153											
SLIT2	9353	broad.mit.edu	37	chr4	20512545	20512545	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatttcttttttaaatttctGatccttcagatgttcaatgt	5	6	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20512545	T	T	20512545	1	4	226	0	1	0	0	0	0	0	0	0	14854	1305	45	3		3	SLIT2	4	20512545	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3998842	20512545	170641731	399	171154											
SLIT2	9353	broad.mit.edu	37	chr4	20530581	20530581	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctcaataggtacagaagAttatcgatcaaaattaagtg	7	5	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20530581	G	G	20530581	3	3	226	1	0	0	0	0	1	0	0	0	14854	333	12	5	1534	5	SLIT2	4	20530581	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	18036	20530581	170623695	400	171155											
GPR125	166647	broad.mit.edu	37	chr4	22422577	22422577	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcttatccaggtttcCctctggatcccgcctcccat	7	17	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22422577	T	T	22422577	3	4	226	1	0	0	0	0	1	0	0	0	6704	632	22	4	2256	4	GPR125	4	22422577	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1891996	22422577	168731699	401	171156											
GBA3	57733	broad.mit.edu	37	chr4	22749403	22749404	+	Frame_Shift_Ins	INS	-	T	T													tggatttatttgctaaacccINSatattcatcgatggtgatta							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22749404	T	T	22749403	7	5	226	1	0	1	1	0	0	0	0	0	6330	581	21	0	781	0	GBA3	4	22749403	Frame_Shift_Ins	INS	-	TCGA-91-6829-01A-21D-1855-08	326826	22749403	168404873	402	171157											
LGI2	55203	broad.mit.edu	37	chr4	25005746	25005746	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcattgggcttggaaatgCgagagacctctatgtcttgg	13	7	3	1	rs149130054		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25005746	T	T	25005746	3	4	226	1	0	0	0	0	1	0	0	0	8824	768	27	4	676	4	LGI2	4	25005746	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2256343	25005746	166148530	403	171158											
TLR1	7096	broad.mit.edu	37	chr4	38798855	38798855	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ctatatttttgacaaattctCctagctcacaggtacattgg	6	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38798855	G	G	38798855	3	3	226	1	0	0	0	0	1	0	0	0	16072	855	30	4	766	4	TLR1	4	38798855	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	13793109	38798855	152355421	404	171159											
RFC1	5981	broad.mit.edu	37	chr4	39310388	39310388	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttatatttatccacccagaGcaaattttccactttgtttt	3	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39310388	C	C	39310388	3	2	226	1	0	0	0	0	1	0	0	0	13352	971	34	4	1742	4	RFC1	4	39310388	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	511533	39310388	151843888	405	171160											
BEND4	389206	broad.mit.edu	37	chr4	42145827	42145827	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtctacattgtctgaggtCtgactgtggacccctttccc	9	12	3	2	rs139053577	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42145827	G	G	42145827	3	3	226	1	0	0	0	0	1	0	0	0	1405	912	32	4	948	4	BEND4	4	42145827	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2835439	42145827	149008449	406	171161											
COX7B2	170712	broad.mit.edu	37	chr4	46737239	46737239	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttgccttcagctactggTctattttgttgcaaagaggc	10	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46737239	C	C	46737239	1	2	226	0	1	0	0	0	0	0	0	0	3815	1682	58	5		5	COX7B2	4	46737239	5'UTR	SNP	T	TCGA-91-6829-01A-21D-1855-08	4591412	46737239	144417037	407	171162											
GABRB1	2560	broad.mit.edu	37	chr4	47163293	47163293	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcaccatgtatttccagCagtcttggaaagacaaaagg	8	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47163293	A	A	47163293	3	1	226	1	0	0	0	0	1	0	0	0	6226	711	25	3	282	3	GABRB1	4	47163293	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	426054	47163293	143990983	408	171163											
GABRB1	2560	broad.mit.edu	37	chr4	47427629	47427629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atggggtatcattagtaacaGgttaatgaaaacaggcaaag	11	4	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47427629	A	A	47427629	1	1	226	0	1	0	0	0	0	0	0	0	6226	1015	35	4		4	GABRB1	4	47427629	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	264336	47427629	143726647	409	171164											
NIPAL1	152519	broad.mit.edu	37	chr4	48037822	48037822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttgtgctttcagtaactaCacagattaactatctcaaca	4	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48037822	A	A	48037822	3	1	226	1	0	0	0	0	1	0	0	0	10519	478	17	3	888	3	NIPAL1	4	48037822	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	610193	48037822	143116454	410	171165											
TEC	7006	broad.mit.edu	37	chr4	48152932	48152932	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	caagcctggttgactggaatCccttaccataaaaccacctt	6	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48152932	T	T	48152932	3	4	226	1	0	0	0	0	1	0	0	0	15864	855	30	4	1111	4	TEC	4	48152932	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	115110	48152932	143001344	411	171166											
TEC	7006	broad.mit.edu	37	chr4	48230691	48230691	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agtattctacagtgaaaaaaGaaacagttaaaatgtgacag	8	4	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48230691	T	T	48230691	1	4	226	0	1	0	0	0	0	0	0	0	15864	957	33	3		3	TEC	4	48230691	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	77759	48230691	142923585	412	171167											
OCIAD1	54940	broad.mit.edu	37	chr4	48835352	48835352	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgttaatgtttaggctaaGataatttttcagacctagtt	7	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48835352	T	T	48835352	1	4	226	0	1	0	0	0	0	0	0	0	10912	957	33	3		3	OCIAD1	4	48835352	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	604661	48835352	142318924	413	171168											
DCUN1D4	23142	broad.mit.edu	37	chr4	52765609	52765609	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctttttaaattgccttttGaggttagtttttacatgcca	6	8	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52765609	T	T	52765609	1	4	226	0	1	0	0	0	0	0	0	0	4349	1305	45	3		3	DCUN1D4	4	52765609	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3930257	52765609	138388667	414	171169											
SGCB	6443	broad.mit.edu	37	chr4	52890329	52890329	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taggatgatactgttttcctAttaggagaatagtaatatga	9	3	0	3	rs112774633		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52890329	G	G	52890329	1	3	226	0	1	0	0	0	0	0	0	0	14313	464	16	5		5	SGCB	4	52890329	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	124720	52890329	138263947	415	171170											
POLR2B	5431	broad.mit.edu	37	chr4	57887234	57887234	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatgcaaaaaaagttcttAaaatacagtttaactacgcc	4	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57887234	G	G	57887234	1	3	226	0	1	0	0	0	0	0	0	0	12310	377	13	5		5	POLR2B	4	57887234	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	4996905	57887234	133267042	416	171171											
LPHN3	23284	broad.mit.edu	37	chr4	62903472	62903472	+	Frame_Shift_Del	DEL	C	-	-													cgaaaagagtatgggaaatgCctgcgaacacattgctgtag							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	62903472	-	-	62903472	7	5	226	1	0	1	0	1	0	0	0	0	9004	747	26	0	3493	0	LPHN3	4	62903472	Frame_Shift_Del	DEL	C	TCGA-91-6829-01A-21D-1855-08	5016238	62903472	128250804	417	171172											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68788579	68788579	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttgccaaggccaggccgCcttgggtgcaatgactccag	13	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68788579	T	T	68788579	3	4	226	1	0	0	0	0	1	0	0	0	16362	739	26	4	686	4	TMPRSS11A	4	68788579	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	5885107	68788579	122365697	418	171173											
PRDM8	56978	broad.mit.edu	37	chr4	81121284	81121284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggatggagatgccaaggCtgtccaacaatgtctgacag	13	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81121284	A	A	81121284	3	1	226	1	0	0	0	0	1	0	0	0	12568	797	28	3	52	3	PRDM8	4	81121284	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	12332705	81121284	110032992	419	171174											
COQ2	27235	broad.mit.edu	37	chr4	84185539	84185539	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaagagaggaatacaaagtTgtattaatacctagtctgga	10	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84185539	A	A	84185539	1	1	226	0	1	0	0	0	0	0	0	0	3777	1827	63	5		5	COQ2	4	84185539	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	3064255	84185539	106968737	420	171175											
AFF1	4299	broad.mit.edu	37	chr4	88029353	88029353	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtggcatcagcacattcCagcagtgcagagtcagaaag	11	11	2	2	rs146991025	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88029353	T	T	88029353	2	4	226	1	0	0	0	0	0	0	0	1	356	581	21	4		4	AFF1	4	88029353	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	3843814	88029353	103124923	421	171176											
METAP1	23173	broad.mit.edu	37	chr4	99962203	99962203	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttttacagcttgctagaGaagttttggatgttgctgcc	10	7	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99962203	A	A	99962203	3	1	226	1	0	0	0	0	1	0	0	0	9579	943	33	4	464	4	METAP1	4	99962203	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	11932850	99962203	91192073	422	171177											
EGF	1950	broad.mit.edu	37	chr4	110925712	110925712	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatccttatgaggagtcgagCagagatgtgaggagtcgcag	15	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110925712	G	G	110925712	3	3	226	1	0	0	0	0	1	0	0	0	5002	709	25	4	3311	4	EGF	4	110925712	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	10963509	110925712	80228564	423	171178											
SYNPO2	171024	broad.mit.edu	37	chr4	119944675	119944675	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acccttgtgcagatctcaccTaccctgaagtcatcaagctc	6	15	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119944675	A	A	119944675	3	1	226	1	0	0	0	0	1	0	0	0	15576	1522	53	5	202	5	SYNPO2	4	119944675	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	9018963	119944675	71209601	424	171179											
RXFP1	59350	broad.mit.edu	37	chr4	159493974	159493974	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgcgggaatcaggccgaTgaggacaactgtggtgagtg	17	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159493974	C	C	159493974	2	2	226	1	0	0	0	0	0	0	0	1	13870	1461	51	5		5	RXFP1	4	159493974	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	39549299	159493974	31660302	425	171180											
RXFP1	59350	broad.mit.edu	37	chr4	159560534	159560534	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgttaatatttgtttccaTgtgtattatgataatgcatc	7	4	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	159560534	G	G	159560534	1	3	226	0	1	0	0	0	0	0	0	0	13870	1479	51	5		5	RXFP1	4	159560534	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	66560	159560534	31593742	426	171181											
NPY5R	4889	broad.mit.edu	37	chr4	164271597	164271597	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtcttcttggctttatgGggaatctacttattttaatg	8	5	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164271597	T	T	164271597	3	4	226	1	0	0	0	0	1	0	0	0	10705	1232	43	2	174	2	NPY5R	4	164271597	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4711063	164271597	26882679	427	171182											
MARCH1	55016	broad.mit.edu	37	chr4	165109610	165109611	+	Intron	DNP	GG	TT	TT													gaggacaaggaggaggacgtGggcacggtggtctgcgtcga							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	165109611	TT	TT	165109610	1	4	226	0	1	0	0	0	0	0	0	0	9390	1363	47	2		2	MARCH1	4	165109610	Intron	DNP	GG	TCGA-91-6829-01A-21D-1855-08	838013	165109610	26044666	428	171183											
DDX60	55601	broad.mit.edu	37	chr4	169227859	169227859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagggaagttgaaatacgCatactcggcatcctgtggag	12	8	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169227859	A	A	169227859	3	1	226	1	0	0	0	0	1	0	0	0	4411	710	25	3	4997	3	DDX60	4	169227859	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4118249	169227859	21926417	429	171184											
GPM6A	2823	broad.mit.edu	37	chr4	176622818	176622818	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaagcgcttcatgaccGcagccacagaacagggcaac	10	14	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176622818	T	T	176622818	4	4	226	1	0	0	0	0	0	1	0	0	6680	1079	38	3	722	3	GPM6A	4	176622818	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	7394959	176622818	14531458	430	171185											
ODZ3	55714	broad.mit.edu	37	chr4	183603130	183603130	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaaagtggctcctgcacGtgtgaccctaactggactgg	12	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	183603130	T	T	183603130	2	4	226	1	0	0	0	0	0	0	0	1	10931	1132	40	3		3	ODZ3	4	183603130	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	6980312	183603130	7551146	431	171186											
CYP4V2	285440	broad.mit.edu	37	chr4	187130045	187130045	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgaccgtcccgctacagtaGaagacctgaagaaacttcgg	10	12	0	5	rs58584561		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	187130045	C	C	187130045	3	2	226	1	0	0	0	0	1	0	0	0	4225	943	33	4	1151	4	CYP4V2	4	187130045	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3526915	187130045	4024231	432	171187											
F11	2160	broad.mit.edu	37	chr4	187201279	187201279	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcacagcatcccaggtaAactgagagttctgcattctg	10	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187201279	T	T	187201279	1	4	226	0	1	0	0	0	0	0	0	0	5380	29	1	5		5	F11	4	187201279	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	71234	187201279	3952997	433	171188											
SLC12A7	10723	broad.mit.edu	37	chr5	1085503	1085503	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacgagcgtgcacgtgccgTacacacgcatgttgtgcagc	13	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1085503	A	A	1085503	3	1	226	1	0	0	0	0	1	0	0	0	14501	1638	57	5	2562	5	SLC12A7	5	1085503	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08		1085503	179829757	434	171189											
SLC6A3	6531	broad.mit.edu	37	chr5	1394913	1394913	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcagaaaccctggggcgaTgccccatttaagagcagctg	12	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1394913	A	A	1394913	1	1	226	0	1	0	0	0	0	0	0	0	14799	1479	51	5		5	SLC6A3	5	1394913	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	309410	1394913	179520347	435	171190											
IRX2	153572	broad.mit.edu	37	chr5	2747804	2747804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaccaccgtgcacccacCatcctccactcccaggcaaa	6	20	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2747804	A	A	2747804	1	1	226	0	1	0	0	0	0	0	0	0	7914	609	21	2		2	IRX2	5	2747804	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1352891	2747804	178167456	436	171191											
IRX2	153572	broad.mit.edu	37	chr5	2749627	2749627	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcccaggtcatcttgttcTccttcttgaggcgccggcgc	13	14	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2749627	A	A	2749627	3	1	226	1	0	0	0	0	1	0	0	0	7914	1551	54	5	903	5	IRX2	5	2749627	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1823	2749627	178165633	437	171192											
NSUN2	54888	broad.mit.edu	37	chr5	6602676	6602676	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggatgcatgcgctgagcaCatttctgcacctagtgatgt	12	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6602676	T	T	6602676	1	4	226	0	1	0	0	0	0	0	0	0	10773	493	17	4		4	NSUN2	5	6602676	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3853049	6602676	174312584	438	171193											
PAPD7	11044	broad.mit.edu	37	chr5	6739804	6739804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgagtgtgtaggctgtGgcgaggggagcagtggctga	19	7	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6739804	T	T	6739804	1	4	226	0	1	0	0	0	0	0	0	0	11520	1363	47	2		2	PAPD7	5	6739804	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	137128	6739804	174175456	439	171194											
ADCY2	108	broad.mit.edu	37	chr5	7690791	7690791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatttgttcctccttccCcaccttgtccaggagcggct	8	15	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7690791	A	A	7690791	1	1	226	0	1	0	0	0	0	0	0	0	294	638	22	2		2	ADCY2	5	7690791	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	950987	7690791	173224469	440	171195											
ADCY2	108	broad.mit.edu	37	chr5	7690890	7690890	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcagggccccaaggcGggccagatggagaacacaaa	15	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7690890	T	T	7690890	2	4	226	1	0	0	0	0	0	0	0	1	294	1103	39	1		1	ADCY2	5	7690890	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	99	7690890	173224370	441	171196											
ADCY2	108	broad.mit.edu	37	chr5	7712952	7712952	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttttgacaattaataacCttttttctcaatataggatg	5	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7712952	A	A	7712952	1	1	226	0	1	0	0	0	0	0	0	0	294	696	24	2		2	ADCY2	5	7712952	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	22062	7712952	173202308	442	171197											
ADCY2	108	broad.mit.edu	37	chr5	7757841	7757841	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caacatgctcagccccggggTgagtcagggctcacagcagg	14	13	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7757841	G	G	7757841	1	3	226	0	1	0	0	0	0	0	0	0	294	1711	59	5		5	ADCY2	5	7757841	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	44889	7757841	173157419	443	171198											
ADCY2	108	broad.mit.edu	37	chr5	7772958	7772958	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cttatatgttgaccagatgaGatgggcggtggtcccctgat	13	8	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7772958	A	A	7772958	1	1	226	0	1	0	0	0	0	0	0	0	294	957	33	4		4	ADCY2	5	7772958	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	15117	7772958	173142302	444	171199											
ADCY2	108	broad.mit.edu	37	chr5	7804829	7804829	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacgcgttggccacttaacGgcacaggtgagcctcaaccc	11	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7804829	T	T	7804829	1	4	226	0	1	0	0	0	0	0	0	0	294	1131	39	1		1	ADCY2	5	7804829	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	31871	7804829	173110431	445	171200											
SEMA5A	9037	broad.mit.edu	37	chr5	9227044	9227044	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaataaccggtcgccaccCaccagaagcacccggatgta	10	14	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9227044	G	G	9227044	2	3	226	1	0	0	0	0	0	0	0	1	14150	581	21	4		4	SEMA5A	5	9227044	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1422215	9227044	171688216	446	171201											
CTNND2	1501	broad.mit.edu	37	chr5	11732329	11732329	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaggtgtttaagccggggctCagggaactcgtcttctctga	14	9	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11732329	A	A	11732329	2	1	226	1	0	0	0	0	0	0	0	1	4054	813	29	3		3	CTNND2	5	11732329	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	2505285	11732329	169182931	447	171202											
FBXL7	23194	broad.mit.edu	37	chr5	15935161	15935161	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggctctgagacctgggaaAgtctggagggctaagggaag	17	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15935161	G	G	15935161	1	3	226	0	1	0	0	0	0	0	0	0	5781	87	3	5		5	FBXL7	5	15935161	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	4202832	15935161	164980099	448	171203											
MYO10	4651	broad.mit.edu	37	chr5	16681910	16681910	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctcgaaatgaaaatgcTgcagatgtctatatgcaaat	9	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16681910	C	C	16681910	1	2	226	0	1	0	0	0	0	0	0	0	10156	1595	55	5		5	MYO10	5	16681910	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	746749	16681910	164233350	449	171204											
CDH12	1010	broad.mit.edu	37	chr5	21883743	21883743	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaggaaaagttggagaggtCattgtgaccaaagacgatgc	13	5	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21883743	T	T	21883743	1	4	226	0	1	0	0	0	0	0	0	0	3128	841	29	4		4	CDH12	5	21883743	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	5201833	21883743	159031517	450	171205											
CDH12	1010	broad.mit.edu	37	chr5	21883889	21883889	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgaatggctggcaaaacTttcagatggagtagttgtgc	13	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21883889	A	A	21883889	1	1	226	0	1	0	0	0	0	0	0	0	3128	1624	56	5		5	CDH12	5	21883889	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	146	21883889	159031371	451	171206											
PRDM9	56979	broad.mit.edu	37	chr5	23509248	23509248	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgaagctggactcctagcaGgagctgatctctggagtgct	14	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23509248	A	A	23509248	1	1	226	0	1	0	0	0	0	0	0	0	12569	1015	35	4		4	PRDM9	5	23509248	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1625359	23509248	157406012	452	171207											
CDH10	1008	broad.mit.edu	37	chr5	24487955	24487955	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaagtgagtcgtagggGggtgcggtggggtcaagatc	20	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24487955	A	A	24487955	2	1	226	1	0	0	0	0	0	0	0	1	3126	1219	43	4		4	CDH10	5	24487955	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	978707	24487955	156427305	453	171208											
CDH6	1004	broad.mit.edu	37	chr5	31294121	31294121	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acttaaatatatcctttcagGagatggagcaggagatctct	9	7	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31294121	T	T	31294121	3	4	226	1	0	0	0	0	1	0	0	0	3144	1174	41	3	287	3	CDH6	5	31294121	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	6806166	31294121	149621139	454	171209											
PDZD2	23037	broad.mit.edu	37	chr5	32072176	32072176	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagtgaccgttgattagaacGaagtgttcttggaaagatag	12	4	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32072176	T	T	32072176	1	4	226	0	1	0	0	0	0	0	0	0	11795	1073	37	3		3	PDZD2	5	32072176	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	778055	32072176	148843084	455	171210											
NPR3	4883	broad.mit.edu	37	chr5	32712584	32712584	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgcacacgtccatctaCagtttcgacgagaccaaaga	9	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32712584	A	A	32712584	4	1	226	1	0	0	0	0	0	1	0	0	10691	489	17	3	704	3	NPR3	5	32712584	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	640408	32712584	148202676	456	171211											
NPR3	4883	broad.mit.edu	37	chr5	32780966	32780966	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagttgctccttctgctcgtGgggactctgaggaatgcatt	12	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32780966	C	C	32780966	1	2	226	0	1	0	0	0	0	0	0	0	10691	1363	47	4		4	NPR3	5	32780966	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	68382	32780966	148134294	457	171212											
ADAMTS12	81792	broad.mit.edu	37	chr5	33596156	33596156	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatgcaatgggcagtttggCggcggatacctgggggtcag	17	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33596156	T	T	33596156	3	4	226	1	0	0	0	0	1	0	0	0	257	768	27	4	2279	4	ADAMTS12	5	33596156	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	815190	33596156	147319104	458	171213											
ADAMTS12	81792	broad.mit.edu	37	chr5	33641890	33641890	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagcacatgtggagagaaGggaaatatatttatctggac	11	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33641890	C	C	33641890	1	2	226	0	1	0	0	0	0	0	0	0	257	1015	35	4		4	ADAMTS12	5	33641890	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	45734	33641890	147273370	459	171214											
RAI14	26064	broad.mit.edu	37	chr5	34687102	34687102	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtctggctgttccttcttctCcatggagctgcagaaacgct	10	12	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34687102	G	G	34687102	1	3	226	0	1	0	0	0	0	0	0	0	13116	870	30	4		4	RAI14	5	34687102	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1045212	34687102	146228158	460	171215											
PRLR	5618	broad.mit.edu	37	chr5	35065590	35065590	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctggggcagcagccagggCgtatcctggtcagtctcaga	14	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35065590	G	G	35065590	2	3	226	1	0	0	0	0	0	0	0	1	12637	755	27	4		4	PRLR	5	35065590	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	378488	35065590	145849670	461	171216											
SPEF2	79925	broad.mit.edu	37	chr5	35759608	35759608	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcagaggcttatatcGgaaatatgtacagatcagct	9	7	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35759608	A	A	35759608	1	1	226	0	1	0	0	0	0	0	0	0	15153	1131	39	4		4	SPEF2	5	35759608	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	694018	35759608	145155652	462	171217											
SKP2	6502	broad.mit.edu	37	chr5	36171855	36171855	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggttagagcttccaagcctgGaccactgaggccttcacaac	10	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36171855	T	T	36171855	1	4	226	0	1	0	0	0	0	0	0	0	14475	1189	41	3		3	SKP2	5	36171855	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	412247	36171855	144743405	463	171218											
NIPBL	25836	broad.mit.edu	37	chr5	36995920	36995920	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaatgtaagtatcacagAactctttgttattattttag	6	4	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36995920	C	C	36995920	1	2	226	0	1	0	0	0	0	0	0	0	10523	261	9	5		5	NIPBL	5	36995920	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	824065	36995920	143919340	464	171219											
NUP155	9631	broad.mit.edu	37	chr5	37305006	37305006	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttctgggcatcacaacCctttagccctataaactcca	5	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37305006	A	A	37305006	1	1	226	0	1	0	0	0	0	0	0	0	10851	638	22	2		2	NUP155	5	37305006	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	309086	37305006	143610254	465	171220											
HEATR7B2	133558	broad.mit.edu	37	chr5	41052496	41052496	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggatcctaatcattttTtaaaaagaaacatagttgag	6	4	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41052496	A	A	41052496	1	1	226	0	1	0	0	0	0	0	0	0	7102	1856	64	5		5	HEATR7B2	5	41052496	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	3747490	41052496	139862764	466	171221											
C6	729	broad.mit.edu	37	chr5	41155230	41155230	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattaaagcagaaaccagaaAttattaatgctatgaataac	5	5	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41155230	G	G	41155230	1	3	226	0	1	0	0	0	0	0	0	0	2338	116	4	5		5	C6	5	41155230	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	102734	41155230	139760030	467	171222											
C6	729	broad.mit.edu	37	chr5	41199692	41199692	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaaatggtataactgaaAagccataattttacagtgga	8	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41199692	G	G	41199692	1	3	226	0	1	0	0	0	0	0	0	0	2338	29	1	5		5	C6	5	41199692	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	44462	41199692	139715568	468	171223											
PLCXD3	345557	broad.mit.edu	37	chr5	41382476	41382476	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataacgaattccagctccTagctggccagtaaaattcat	6	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41382476	C	C	41382476	2	2	226	1	0	0	0	0	0	0	0	1	12138	1509	53	5		5	PLCXD3	5	41382476	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	182784	41382476	139532784	469	171224											
FBXO4	26272	broad.mit.edu	37	chr5	41927303	41927303	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatctagaaatcttaaaaaaGcctatatctgaggtcactga	7	7	4	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41927303	T	T	41927303	3	4	226	1	0	0	0	0	1	0	0	0	5805	962	34	3	384	3	FBXO4	5	41927303	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	544827	41927303	138987957	470	171225											
GHR	2690	broad.mit.edu	37	chr5	42465935	42465935	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaccatgaccttgaataGgtcggtcaataatcagtcta	8	10	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42465935	T	T	42465935	1	4	226	0	1	0	0	0	0	0	0	0	6435	1015	35	2		2	GHR	5	42465935	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	538632	42465935	138449325	471	171226											
GHR	2690	broad.mit.edu	37	chr5	42718314	42718314	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttttctgtaagctatataTatcacattcaattttcttgt	5	6	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42718314	A	A	42718314	1	1	226	0	1	0	0	0	0	0	0	0	6435	1421	49	5		5	GHR	5	42718314	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	252379	42718314	138196946	472	171227											
MRPS30	10884	broad.mit.edu	37	chr5	44814835	44814835	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaatattatttgtgcAgaaataaaatatagggttag	10	1	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44814835	T	T	44814835	1	4	226	0	1	0	0	0	0	0	0	0	9934	203	7	5		5	MRPS30	5	44814835	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2096521	44814835	136100425	473	171228											
ITGA1	3672	broad.mit.edu	37	chr5	52223596	52223596	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtagtttaggataatacgGatgaaaaatgttcagttcaa	10	3	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52223596	T	T	52223596	1	4	226	0	1	0	0	0	0	0	0	0	7942	1189	41	3		3	ITGA1	5	52223596	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	7408761	52223596	128691664	474	171229											
GZMK	3003	broad.mit.edu	37	chr5	54326301	54326301	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccactgtggttttaggcgcAcactctctctcaaagaatga	8	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54326301	T	T	54326301	2	4	226	1	0	0	0	0	0	0	0	1	6983	146	6	5		5	GZMK	5	54326301	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	2102705	54326301	126588959	475	171230											
CD180	4064	broad.mit.edu	37	chr5	66479315	66479315	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtatcaaggaagcagtaagtGagattcagaacctgaaggaa	12	5	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66479315	A	A	66479315	2	1	226	1	0	0	0	0	0	0	0	1	3002	1277	45	4		4	CD180	5	66479315	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	12153014	66479315	114435945	476	171231											
MCCC2	64087	broad.mit.edu	37	chr5	70948586	70948586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actattccagcgcaaggtggGggccagaacatcactaactc	10	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70948586	T	T	70948586	1	4	226	0	1	0	0	0	0	0	0	0	9468	1247	43	2		2	MCCC2	5	70948586	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	4469271	70948586	109966674	477	171232											
GFM2	84340	broad.mit.edu	37	chr5	74021326	74021326	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcagagattctccatgAtaagaactcttgttgaccac	7	9	3	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74021326	G	G	74021326	1	3	226	0	1	0	0	0	0	0	0	0	6406	348	12	5		5	GFM2	5	74021326	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3072740	74021326	106893934	478	171233											
F2R	2149	broad.mit.edu	37	chr5	76029252	76029252	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagttataacagcagtgGgcagttgatggcaagtaaaa	12	6	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76029252	T	T	76029252	3	4	226	1	0	0	0	0	1	0	0	0	5386	1232	43	2	1208	2	F2R	5	76029252	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2007926	76029252	104886008	479	171234											
JMY	133746	broad.mit.edu	37	chr5	78612080	78612080	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gaattaaagaagcatccccaGagtcagaggacgaagaggag	13	7	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78612080	C	C	78612080	3	2	226	1	0	0	0	0	1	0	0	0	8027	943	33	4	2955	4	JMY	5	78612080	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2582828	78612080	102303180	480	171235											
CMYA5	202333	broad.mit.edu	37	chr5	79031289	79031289	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taatgtagctgagaaaccagCtgatcattcattatcagagg	9	7	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	79031289	G	G	79031289	3	3	226	1	0	0	0	0	1	0	0	0	3622	797	28	4	6707	4	CMYA5	5	79031289	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	419209	79031289	101883971	481	171236											
ANKRD34B	340120	broad.mit.edu	37	chr5	79855521	79855521	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aagctgaggtcagccccactCttgaggagcaaggaaacaac	11	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79855521	A	A	79855521	3	1	226	1	0	0	0	0	1	0	0	0	663	912	32	3	1230	3	ANKRD34B	5	79855521	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	824232	79855521	101059739	482	171237											
ATG10	83734	broad.mit.edu	37	chr5	81474444	81474444	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttattgtatgcatgttatTgtattctttcccgctgctca	6	8	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81474444	A	A	81474444	1	1	226	0	1	0	0	0	0	0	0	0	1093	1827	63	5		5	ATG10	5	81474444	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1618923	81474444	99440816	483	171238											
TTC37	9652	broad.mit.edu	37	chr5	94839593	94839593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcttctaacacttcaaGgggtgttgacttaaaagcct	9	8	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94839593	A	A	94839593	3	1	226	1	0	0	0	0	1	0	0	0	16831	1000	35	4	1604	4	TTC37	5	94839593	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	13365149	94839593	86075667	484	171239											
SPATA9	83890	broad.mit.edu	37	chr5	95018212	95018212	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attttttctattccttttaaAggttataaaatcacattacc	2	7	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	95018212	G	G	95018212	1	3	226	0	1	0	0	0	0	0	0	0	15132	87	3	5		5	SPATA9	5	95018212	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	178619	95018212	85897048	485	171240											
MAN2A1	4124	broad.mit.edu	37	chr5	109051926	109051926	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaatgggacactgaacccCttcaagtctttgtggtgcct	10	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109051926	T	T	109051926	3	4	226	1	0	0	0	0	1	0	0	0	9306	681	24	4	506	4	MAN2A1	5	109051926	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	14033714	109051926	71863334	486	171241											
EPB41L4A	64097	broad.mit.edu	37	chr5	111531407	111531407	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	accactgttatgggctttccTgtgaaaacaaatgaagacat	8	8	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111531407	C	C	111531407	5	2	226	1	0	0	0	0	0	0	1	0	5197	1594	55	5	717	5	EPB41L4A	5	111531407	Splice_Site	SNP	T	TCGA-91-6829-01A-21D-1855-08	2479481	111531407	69383853	487	171242											
SEMA6A	57556	broad.mit.edu	37	chr5	115815990	115815990	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctaaaatgaaacaaagGgtgaggaaggagggagctta	15	4	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115815990	T	T	115815990	1	4	226	0	1	0	0	0	0	0	0	0	14152	1247	43	2		2	SEMA6A	5	115815990	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	4284583	115815990	65099270	488	171243											
PRR16	51334	broad.mit.edu	37	chr5	120022181	120022181	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taacataaaaaacagggaggTccacttacacagtgaacctg	8	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120022181	C	C	120022181	3	2	226	1	0	0	0	0	1	0	0	0	12695	1667	58	5	629	5	PRR16	5	120022181	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	4206191	120022181	60893079	489	171244											
SNCAIP	9627	broad.mit.edu	37	chr5	121799164	121799164	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagttttatctaattttggcCtgtggtttctcttctgctta	7	7	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121799164	T	T	121799164	1	4	226	0	1	0	0	0	0	0	0	0	14955	696	24	4		4	SNCAIP	5	121799164	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1776983	121799164	59116096	490	171245											
MEGF10	84466	broad.mit.edu	37	chr5	126783246	126783246	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatttccttcccttcttgCaggaacccttcctcacagca	4	17	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126783246	A	A	126783246	1	1	226	0	1	0	0	0	0	0	0	0	9553	725	25	3		3	MEGF10	5	126783246	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4984082	126783246	54132014	491	171246											
LOC153328	153328	broad.mit.edu	37	chr5	135178167	135178167	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtacagtagccatgtttcCcattacctcttaaaaagagg	8	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135178167	A	A	135178167	1	1	226	0	1	0	0	0	0	0	0	0	8949	638	22	2		2	LOC153328	5	135178167	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	8394921	135178167	45737093	492	171247											
PCDHB4	56131	broad.mit.edu	37	chr5	140503842	140503842	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	taccagtacgaggtgtgtctGacaggagactctgggactgg	15	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140503842	A	A	140503842	2	1	226	1	0	0	0	0	0	0	0	1	11638	1277	45	4		4	PCDHB4	5	140503842	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	5325675	140503842	40411418	493	171248											
PCDHB12	56124	broad.mit.edu	37	chr5	140590281	140590281	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactcgggccagaacgcctGgctgtcgtaccagctgctca	12	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140590281	T	T	140590281	3	4	226	1	0	0	0	0	1	0	0	0	11631	1357	47	2	1804	2	PCDHB12	5	140590281	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	86439	140590281	40324979	494	171249											
PCDHGA1	56114	broad.mit.edu	37	chr5	140712360	140712360	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcggccgcggtctcctgcgtCttcctggccttcgtcatcgt	12	16	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140712360	G	G	140712360	2	3	226	1	0	0	0	0	0	0	0	1	11644	900	32	4		4	PCDHGA1	5	140712360	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	122079	140712360	40202900	495	171250											
PCDHGA3	56112	broad.mit.edu	37	chr5	140724427	140724427	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacgagggattcaatgctcAagtgtcttatattctagata	9	6	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140724427	C	C	140724427	3	2	226	1	0	0	0	0	1	0	0	0	11649	130	5	5	829	5	PCDHGA3	5	140724427	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	12067	140724427	40190833	496	171251											
RBM27	54439	broad.mit.edu	37	chr5	145648949	145648949	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttatattaaagtttattaAgcatggttttacctttttct	4	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145648949	T	T	145648949	1	4	226	0	1	0	0	0	0	0	0	0	13235	87	3	5		5	RBM27	5	145648949	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	4924522	145648949	35266311	497	171252											
PDGFRB	5159	broad.mit.edu	37	chr5	149501587	149501587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagccaccgtcgctctcccCggtcaaggacacatggctgg	12	15	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149501587	A	A	149501587	3	1	226	1	0	0	0	0	1	0	0	0	11756	652	23	1	1152	1	PDGFRB	5	149501587	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3852638	149501587	31413673	498	171253											
SLC6A7	6534	broad.mit.edu	37	chr5	149584221	149584221	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agagccgtgggaagtggagtCgagctctccgcagtgggaga	18	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149584221	T	T	149584221	1	4	226	0	1	0	0	0	0	0	0	0	14803	899	31	4		4	SLC6A7	5	149584221	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	82634	149584221	31331039	499	171254											
MYOZ3	91977	broad.mit.edu	37	chr5	150042617	150042617	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actccatcatttccttgctcCcaggctgcactcactctggc	6	17	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150042617	T	T	150042617	1	4	226	0	1	0	0	0	0	0	0	0	10191	638	22	4		4	MYOZ3	5	150042617	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	458396	150042617	30872643	500	171255											
HAVCR2	84868	broad.mit.edu	37	chr5	156515818	156515818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttcacttcataactagaCctagagaaagaaggaagtat	7	6	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156515818	A	A	156515818	1	1	226	0	1	0	0	0	0	0	0	0	7040	522	18	3		3	HAVCR2	5	156515818	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	6473201	156515818	24399442	501	171256											
NIPAL4	348938	broad.mit.edu	37	chr5	156895745	156895745	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctagtggctgctggagaagTtgccaactttggagcctacg	13	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156895745	A	A	156895745	3	1	226	1	0	0	0	0	1	0	0	0	10522	1725	60	5	550	5	NIPAL4	5	156895745	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	379927	156895745	24019515	502	171257											
ADAM19	8728	broad.mit.edu	37	chr5	156936289	156936289	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccaaggacaacacaacaTatggaaaaaggctatttacg	8	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156936289	C	C	156936289	1	2	226	0	1	0	0	0	0	0	0	0	240	1421	49	5		5	ADAM19	5	156936289	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	40544	156936289	23978971	503	171258											
ADAM19	8728	broad.mit.edu	37	chr5	156940551	156940551	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccatgtgagatcccagaaCctctcacaggatgcttcctg	8	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156940551	A	A	156940551	1	1	226	0	1	0	0	0	0	0	0	0	240	522	18	3		3	ADAM19	5	156940551	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4262	156940551	23974709	504	171259											
ODZ2	57451	broad.mit.edu	37	chr5	167379664	167379664	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcacaaccacacgctgtccCatcaccactcgtccgccaac	4	21	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167379664	A	A	167379664	3	1	226	1	0	0	0	0	1	0	0	0	10930	594	21	2	798	2	ODZ2	5	167379664	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	10439113	167379664	13535596	505	171260											
ODZ2	57451	broad.mit.edu	37	chr5	167589624	167589624	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctccaaccagatggctgcCctgacttgtgcaacggtaac	9	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167589624	A	A	167589624	3	1	226	1	0	0	0	0	1	0	0	0	10930	623	22	2	2454	2	ODZ2	5	167589624	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	209960	167589624	13325636	506	171261											
SLIT3	6586	broad.mit.edu	37	chr5	168098301	168098301	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccttctccacggagcgGcacaggccgtgcttgcacac	11	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168098301	T	T	168098301	4	4	226	1	0	0	0	0	0	1	0	0	14855	1195	42	3	554	3	SLIT3	5	168098301	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	508677	168098301	12816959	507	171262											
DOCK2	1794	broad.mit.edu	37	chr5	169472786	169472786	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctgcaaacccggtggtgCcacctcacctttgtccctgt	9	16	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169472786	T	T	169472786	1	4	226	0	1	0	0	0	0	0	0	0	4727	754	26	4		4	DOCK2	5	169472786	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1374485	169472786	11442474	508	171263											
FAM153B	202134	broad.mit.edu	37	chr5	175528581	175528581	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggacccagacacactggccGaacgtacgtattctgggatc	12	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175528581	T	T	175528581	4	4	226	1	0	0	0	0	0	1	0	0	5507	1059	37	3	707	3	FAM153B	5	175528581	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	6055795	175528581	5386679	509	171264											
FAM153B	202134	broad.mit.edu	37	chr5	175535482	175535482	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccacggaggatggaccgGcagcagctgagtctgtgctg	15	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175535482	A	A	175535482	1	1	226	0	1	0	0	0	0	0	0	0	5507	1218	42	4		4	FAM153B	5	175535482	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6901	175535482	5379778	510	171265											
UNC5A	90249	broad.mit.edu	37	chr5	176305667	176305667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaggggctgccgcaccgcCgtgacgtgctcccactacca	14	16	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176305667	A	A	176305667	1	1	226	0	1	0	0	0	0	0	0	0	17117	667	23	1		1	UNC5A	5	176305667	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	770185	176305667	4609593	511	171266											
FGFR4	2264	broad.mit.edu	37	chr5	176520201	176520201	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacggacatcatcctgtacGcgtcgggctccctggccttg	11	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176520201	T	T	176520201	3	4	226	1	0	0	0	0	1	0	0	0	5925	1087	38	3	1150	3	FGFR4	5	176520201	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	214534	176520201	4395059	512	171267											
LMAN2	10960	broad.mit.edu	37	chr5	176778124	176778124	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagctgctcgggaggcagGgactagcagccaaccgcaca	13	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176778124	T	T	176778124	1	4	226	0	1	0	0	0	0	0	0	0	8912	1247	43	2		2	LMAN2	5	176778124	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	257923	176778124	4137136	513	171268											
GRM6	2916	broad.mit.edu	37	chr5	178415912	178415912	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagctgtccttcactgctGcaggggggcaggcacccact	12	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178415912	T	T	178415912	1	4	226	0	1	0	0	0	0	0	0	0	6867	1334	46	3		3	GRM6	5	178415912	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1637788	178415912	2499348	514	171269											
CANX	821	broad.mit.edu	37	chr5	179151622	179151622	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatataacataatacatgaaCatgtaaacaaaattgtactt	3	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179151622	A	A	179151622	1	1	226	0	1	0	0	0	0	0	0	0	2644	493	17	3		3	CANX	5	179151622	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	735710	179151622	1763638	515	171270											
BPHL	670	broad.mit.edu	37	chr6	3137679	3137680	+	Missense_Mutation	DNP	TG	CT	CT													atgactactttgccagaaccTgtgaaaagtgggtggatggc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CT	3137680	CT	CT	3137679	3	2	226	1	0	0	0	0	1	0	0	0	1498	1580	55	5	634	5	BPHL	6	3137679	Missense_Mutation	DNP	TG	TCGA-91-6829-01A-21D-1855-08		3137679	167977388	516	171271											
F13A1	2162	broad.mit.edu	37	chr6	6267130	6267130	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcttatagctgaagggacaGgagtaatccattagaattat	9	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6267130	C	C	6267130	1	2	226	0	1	0	0	0	0	0	0	0	5383	1015	35	4		4	F13A1	6	6267130	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3129451	6267130	164847937	517	171272											
F13A1	2162	broad.mit.edu	37	chr6	6318742	6318742	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgcctggacccagagtGgtggggaaggggggtatgct	20	7	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6318742	T	T	6318742	1	4	226	0	1	0	0	0	0	0	0	0	5383	1363	47	2		2	F13A1	6	6318742	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	51612	6318742	164796325	518	171273											
GMPR	2766	broad.mit.edu	37	chr6	16274679	16274679	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacaggagaaatggtagaaGagcttattctttccggagca	12	6	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16274679	C	C	16274679	3	2	226	1	0	0	0	0	1	0	0	0	6560	943	33	4	517	4	GMPR	6	16274679	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	9955937	16274679	154840388	519	171274											
RBM24	221662	broad.mit.edu	37	chr6	17283081	17283081	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgaaagggcctgcaaggatCccaatcccatcattgatggc	10	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17283081	A	A	17283081	3	1	226	1	0	0	0	0	1	0	0	0	13232	855	30	3	253	3	RBM24	6	17283081	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1008402	17283081	153831986	520	171275											
NRSN1	140767	broad.mit.edu	37	chr6	24145935	24145935	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctctggacatgtacaagCtggcaggagctgttctcttc	12	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24145935	A	A	24145935	3	1	226	1	0	0	0	0	1	0	0	0	10757	796	28	3	355	3	NRSN1	6	24145935	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	6862854	24145935	146969132	521	171276											
HIST1H1T	3010	broad.mit.edu	37	chr6	26107887	26107887	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttattggttttagcagtCtttggtgacttggagtccct	10	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26107887	A	A	26107887	3	1	226	1	0	0	0	0	1	0	0	0	7194	912	32	3	192	3	HIST1H1T	6	26107887	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1961952	26107887	145007180	522	171277											
HIST1H2BD	3017	broad.mit.edu	37	chr6	26157397	26157397	+	5'Flank	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcgtggctcgggaaaacGctgctaagcaggggcgggtc	20	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26157397	C	C	26157397	1	2	226	0	1	0	0	0	0	0	0	0	7210	1102	38	4		4	HIST1H2BD	6	26157397	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	49510	26157397	144957670	523	171278											
HIST1H4E	8367	broad.mit.edu	37	chr6	26204885	26204885	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttggtcatgtctggtcgcGgcaaaggcggaaagggactg	17	7	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26204885	T	T	26204885	3	4	226	1	0	0	0	0	1	0	0	0	7236	1116	39	1	15	1	HIST1H4E	6	26204885	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	47488	26204885	144910182	524	171279											
BTN2A2	10385	broad.mit.edu	37	chr6	26392494	26392494	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccttcatggaaacggccaCtacatggggaacccccttca	9	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26392494	G	G	26392494	1	3	226	0	1	0	0	0	0	0	0	0	1571	580	20	4		4	BTN2A2	6	26392494	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	187609	26392494	144722573	525	171280											
PRSS16	10279	broad.mit.edu	37	chr6	27222627	27222627	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acggtggccagacccctgggGctaacaaagtgctgtttgtt	13	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27222627	C	C	27222627	3	2	226	1	0	0	0	0	1	0	0	0	12722	1203	42	4	1344	4	PRSS16	6	27222627	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	830133	27222627	143892440	526	171281											
HIST1H3H	8357	broad.mit.edu	37	chr6	27775977	27775977	+	5'Flank	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgaccgtatagataataGgccttttgccatgtctgggc	10	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27775977	A	A	27775977	1	1	226	0	1	0	0	0	0	0	0	0	7229	1014	35	4		4	HIST1H3H	6	27775977	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	553350	27775977	143339090	527	171282											
ZKSCAN3	80317	broad.mit.edu	37	chr6	28327303	28327303	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atgatttcccacctttcaggGatcttctgcagaaatagcgc	8	11	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28327303	A	A	28327303	1	1	226	0	1	0	0	0	0	0	0	0	17814	1188	41	4		4	ZKSCAN3	6	28327303	5'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	551326	28327303	142787764	528	171283											
GPX5	2880	broad.mit.edu	37	chr6	28493766	28493766	+	5'Flank	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaaagacctcaggcccccaGactagcaatctacaaacact	6	15	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28493766	C	C	28493766	1	2	226	0	1	0	0	0	0	0	0	0	6809	957	33	4		4	GPX5	6	28493766	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	166463	28493766	142621301	529	171284											
MRPS18B	28973	broad.mit.edu	37	chr6	30593315	30593315	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccccaggttgaaccacGggaccttgacttcagtacct	8	15	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30593315	T	T	30593315	3	4	226	1	0	0	0	0	1	0	0	0	9923	1116	39	1	544	1	MRPS18B	6	30593315	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2099549	30593315	140521752	530	171285											
EHMT2	10919	broad.mit.edu	37	chr6	31850426	31850426	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcctggcagtcagcagtGgccatgtatccccttcccac	11	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31850426	A	A	31850426	1	1	226	0	1	0	0	0	0	0	0	0	5024	1363	47	4		4	EHMT2	6	31850426	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1257111	31850426	139264641	531	171286											
LHFPL5	222662	broad.mit.edu	37	chr6	35773838	35773838	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagtctataagatctgtGcatggatgcagctggctgcg	12	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35773838	T	T	35773838	3	4	226	1	0	0	0	0	1	0	0	0	8840	1319	46	3	393	3	LHFPL5	6	35773838	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3923412	35773838	135341229	532	171287											
DNAH8	1769	broad.mit.edu	37	chr6	38790760	38790760	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgaggccctgcaggacTttcagaagtacaagactctc	9	12	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38790760	A	A	38790760	3	1	226	1	0	0	0	0	1	0	0	0	4647	1609	56	5	3109	5	DNAH8	6	38790760	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	3016922	38790760	132324307	533	171288											
DNAH8	1769	broad.mit.edu	37	chr6	38919134	38919134	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttttcaagcaagaaagTatattgcagattctttggag	9	5	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38919134	A	A	38919134	3	1	226	1	0	0	0	0	1	0	0	0	4647	1638	57	5	11948	5	DNAH8	6	38919134	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	128374	38919134	132195933	534	171289											
TREML4	285852	broad.mit.edu	37	chr6	41196631	41196631	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagttcagaagtctcattaCacaatctgggacaagcccaa	8	11	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41196631	A	A	41196631	4	1	226	1	0	0	0	0	0	1	0	0	16598	489	17	3	249	3	TREML4	6	41196631	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2277497	41196631	129918436	535	171290											
PTCRA	171558	broad.mit.edu	37	chr6	42893278	42893278	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgggagcccagtatgggGggaagggtcttacctcagca	16	11	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42893278	A	A	42893278	3	1	226	1	0	0	0	0	1	0	0	0	12841	1232	43	4	718	4	PTCRA	6	42893278	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1696647	42893278	128221789	536	171291											
CUL7	9820	broad.mit.edu	37	chr6	43014777	43014777	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcttgctcccagctgattCagcaccacggcatagtccct	7	16	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43014777	T	T	43014777	2	4	226	1	0	0	0	0	0	0	0	1	4093	813	29	4		4	CUL7	6	43014777	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	121499	43014777	128100290	537	171292											
ZNF318	24149	broad.mit.edu	37	chr6	43310043	43310044	+	Intron	DNP	CC	AG	AG													cccataataagaccaggggaCcagaagcccccagctaccca							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	43310044	AG	AG	43310043	1	1	226	0	1	0	0	0	0	0	0	0	17962	522	18	3		3	ZNF318	6	43310043	Intron	DNP	CC	TCGA-91-6829-01A-21D-1855-08	295266	43310043	127805024	538	171293											
DST	667	broad.mit.edu	37	chr6	56480481	56480481	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgacatatgacttttgaTctttgagttttgtggcaatg	9	5	2	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56480481	A	A	56480481	1	1	226	0	1	0	0	0	0	0	0	0	4823	1435	50	5		5	DST	6	56480481	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	13170438	56480481	114634586	539	171294											
PHF3	23469	broad.mit.edu	37	chr6	64410429	64410429	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgggtaaaaattatacaGaggtaaattcaacacagact	7	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64410429	T	T	64410429	1	4	226	0	1	0	0	0	0	0	0	0	11931	957	33	3		3	PHF3	6	64410429	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	7929948	64410429	106704638	540	171295											
LMBRD1	55788	broad.mit.edu	37	chr6	70409155	70409155	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaaatccttttcttgtgTtatgggaaatgatttacaca	6	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70409155	C	C	70409155	1	2	226	0	1	0	0	0	0	0	0	0	8916	1740	60	5		5	LMBRD1	6	70409155	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	5998726	70409155	100705912	541	171296											
COL19A1	1310	broad.mit.edu	37	chr6	70886415	70886415	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tttttaaatcccaacagggaGatcgaggcccagcaggtccc	10	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70886415	A	A	70886415	3	1	226	1	0	0	0	0	1	0	0	0	3708	942	33	4	2788	4	COL19A1	6	70886415	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	477260	70886415	100228652	542	171297											
COX7A2	1347	broad.mit.edu	37	chr6	75950955	75950955	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcgggaagcagtgcttatCgtcctctgcccaatctgacg	11	13	2	1	rs139079443		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75950955	A	A	75950955	2	1	226	1	0	0	0	0	0	0	0	1	3812	871	31	3		3	COX7A2	6	75950955	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	5064540	75950955	95164112	543	171298											
MYO6	4646	broad.mit.edu	37	chr6	76565044	76565044	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaaaattttgccttgcaGtttgtcaaggaaaaacataa	7	6	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76565044	T	T	76565044	1	4	226	0	1	0	0	0	0	0	0	0	10175	1044	36	3		3	MYO6	6	76565044	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	614089	76565044	94550023	544	171299											
UBE2CBP	90025	broad.mit.edu	37	chr6	83669669	83669669	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catgacgggaaatagttaatCctctgggaaatacgcttgca	10	8	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83669669	A	A	83669669	1	1	226	0	1	0	0	0	0	0	0	0	16973	870	30	3		3	UBE2CBP	6	83669669	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	7104625	83669669	87445398	545	171300											
SNX14	57231	broad.mit.edu	37	chr6	86238049	86238049	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttttggggccaatgatcctCttagaaggaagctgggcatc	12	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86238049	G	G	86238049	3	3	226	1	0	0	0	0	1	0	0	0	14999	912	32	4	954	4	SNX14	6	86238049	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2568380	86238049	84877018	546	171301											
CNR1	1268	broad.mit.edu	37	chr6	88854965	88854965	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatggtgcggaaggtggtaTctgcaaggccatctaggatc	15	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88854965	C	C	88854965	3	2	226	1	0	0	0	0	1	0	0	0	3663	1435	50	5	1393	5	CNR1	6	88854965	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	2616916	88854965	82260102	547	171302											
MAP3K7	6885	broad.mit.edu	37	chr6	91257081	91257081	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cactgctcccacgggaggctCccaagcttaaacgtccagat	9	15	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91257081	G	G	91257081	3	3	226	1	0	0	0	0	1	0	0	0	9347	855	30	4	742	4	MAP3K7	6	91257081	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2402116	91257081	79857986	548	171303											
GRIK2	2898	broad.mit.edu	37	chr6	101878819	101878819	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggtgcaggatggcctaGggaaaggcatagccctcaaa	13	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101878819	T	T	101878819	1	4	226	0	1	0	0	0	0	0	0	0	6840	1015	35	2		2	GRIK2	6	101878819	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	10621738	101878819	69236248	549	171304											
GRIK2	2898	broad.mit.edu	37	chr6	102511928	102511928	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtttttaataatggttaGtatccttgtgcctttctttt	8	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102511928	A	A	102511928	1	1	226	0	1	0	0	0	0	0	0	0	6840	1044	36	4		4	GRIK2	6	102511928	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	633109	102511928	68603139	550	171305											
SLC22A16	85413	broad.mit.edu	37	chr6	110756950	110756950	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccatctcagagatccaggTaacttctataaaaaagaagc	6	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110756950	A	A	110756950	1	1	226	0	1	0	0	0	0	0	0	0	14560	1653	57	5		5	SLC22A16	6	110756950	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	8245022	110756950	60358117	551	171306											
LAMA4	3910	broad.mit.edu	37	chr6	112522940	112522940	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccatacatcaccaaagagActgtcttaactttttatcag	4	10	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112522940	G	G	112522940	1	3	226	0	1	0	0	0	0	0	0	0	8680	290	10	5		5	LAMA4	6	112522940	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1765990	112522940	58592127	552	171307											
RFX6	222546	broad.mit.edu	37	chr6	117244206	117244206	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatttacttcttgatctaaCacaggatgcatgtagtactg	7	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117244206	A	A	117244206	1	1	226	0	1	0	0	0	0	0	0	0	13375	493	17	3		3	RFX6	6	117244206	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4721266	117244206	53870861	553	171308											
NCOA7	135112	broad.mit.edu	37	chr6	126136629	126136629	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcctcaagtattacttcGcattttgtgttttgtgcttg	8	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126136629	A	A	126136629	1	1	226	0	1	0	0	0	0	0	0	0	10329	1102	38	4		4	NCOA7	6	126136629	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	8892423	126136629	44978438	554	171309											
LAMA2	3908	broad.mit.edu	37	chr6	129663727	129663727	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaatctcaatttaagatAgagatatttttaataatata	3	3	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129663727	G	G	129663727	1	3	226	0	1	0	0	0	0	0	0	0	8678	435	15	5		5	LAMA2	6	129663727	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3527098	129663727	41451340	555	171310											
AKAP7	9465	broad.mit.edu	37	chr6	131571672	131571674	+	5'UTR	DEL	AGA	-	-													tctatttggggtcctcacggAgaagaacaccaggaaagaca							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	131571674	-	-	131571672	6	5	226	0	1	1	0	1	0	0	0	0	456	319	11	0		0	AKAP7	6	131571672	5'UTR	DEL	AGA	TCGA-91-6829-01A-21D-1855-08	1907945	131571672	39543395	556	171311											
STX7	8417	broad.mit.edu	37	chr6	132824485	132824485	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgttgttagaggaatgctCctccctctctcaatcagcag	8	13	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132824485	A	A	132824485	1	1	226	0	1	0	0	0	0	0	0	0	15468	870	30	3		3	STX7	6	132824485	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1252813	132824485	38290582	557	171312											
TAAR8	83551	broad.mit.edu	37	chr6	132874098	132874098	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgatgcttttcagcatGgtcaggacggtggagagctg	15	7	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132874098	T	T	132874098	3	4	226	1	0	0	0	0	1	0	0	0	15612	1348	47	2	269	2	TAAR8	6	132874098	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	49613	132874098	38240969	558	171313											
EYA4	2070	broad.mit.edu	37	chr6	133833930	133833930	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gacttaaggtaagctatgccTttcagtatgctgtttcctac	8	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133833930	A	A	133833930	1	1	226	0	1	0	0	0	0	0	0	0	5374	1624	56	5		5	EYA4	6	133833930	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	959832	133833930	37281137	559	171314											
ECT2L	345930	broad.mit.edu	37	chr6	139159550	139159550	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtggacttctctacagtgTtaccacgcttcatttctcta	6	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139159550	A	A	139159550	3	1	226	1	0	0	0	0	1	0	0	0	4942	1722	60	5	251	5	ECT2L	6	139159550	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	5325620	139159550	31955517	560	171315											
VTA1	51534	broad.mit.edu	37	chr6	142510618	142510618	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatacatccataattgttTaaagaatggggagactcctc	7	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142510618	C	C	142510618	3	2	226	1	0	0	0	0	1	0	0	0	17360	1764	61	5	485	5	VTA1	6	142510618	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	3351068	142510618	28604449	561	171316											
HIVEP2	3097	broad.mit.edu	37	chr6	143080987	143080987	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatggtataaagcccttctGggagatggcgctcttattgt	11	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143080987	A	A	143080987	2	1	226	1	0	0	0	0	0	0	0	1	7254	1335	47	4		4	HIVEP2	6	143080987	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	570369	143080987	28034080	562	171317											
LATS1	9113	broad.mit.edu	37	chr6	149983390	149983390	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataacctttaaagattttttAaaattagggggaagagataa	8	2	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149983390	T	T	149983390	1	4	226	0	1	0	0	0	0	0	0	0	8718	377	13	5		5	LATS1	6	149983390	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	6902403	149983390	21131677	563	171318											
LATS1	9113	broad.mit.edu	37	chr6	150001196	150001196	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgtagaatcgtgccagaCtttctggaaagatgcccatt	9	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150001196	G	G	150001196	3	3	226	1	0	0	0	0	1	0	0	0	8718	565	20	4	1000	4	LATS1	6	150001196	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	17806	150001196	21113871	564	171319											
MYCT1	80177	broad.mit.edu	37	chr6	153019179	153019179	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttctatttcttgtggatAttatggctaataacacaaca	5	7	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153019179	G	G	153019179	3	3	226	1	0	0	0	0	1	0	0	0	10116	449	16	5	144	5	MYCT1	6	153019179	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	3017983	153019179	18095888	565	171320											
TIAM2	26230	broad.mit.edu	37	chr6	155450561	155450561	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cgaagctgcctttctcacttTaagagtaaccagccttacgc	7	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155450561	A	A	155450561	3	1	226	1	0	0	0	0	1	0	0	0	16014	1751	61	5	206	5	TIAM2	6	155450561	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	2431382	155450561	15664506	566	171321											
NOX3	50508	broad.mit.edu	37	chr6	155728268	155728268	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagagcttgccttacctggGgtgattgtaggcaatctgct	12	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155728268	C	C	155728268	3	2	226	1	0	0	0	0	1	0	0	0	10652	1232	43	4	138	4	NOX3	6	155728268	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	277707	155728268	15386799	567	171322											
SYTL3	94120	broad.mit.edu	37	chr6	159128441	159128441	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgactcttttttttttTtttcttttaaagataaagtt	4	3	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	159128441	C	C	159128441	1	2	226	0	1	0	0	0	0	0	0	0	15603	1856	64	5		5	SYTL3	6	159128441	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	3400173	159128441	11986626	568	171323											
EZR	7430	broad.mit.edu	37	chr6	159239267	159239267	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctgccgcgcccgacactCggcgcccgcagcgcgctgcc	12	22	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159239267	A	A	159239267	1	1	226	0	1	0	0	0	0	0	0	0	5378	899	31	3		3	EZR	6	159239267	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	110826	159239267	11875800	569	171324											
LPA	4018	broad.mit.edu	37	chr6	161085191	161085191	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttataatttaaaaaaactatGtcttacctgatttcagaaat	3	5	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161085191	A	A	161085191	1	1	226	0	1	0	0	0	0	0	0	0	8990	1392	48	4		4	LPA	6	161085191	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1845924	161085191	10029876	570	171325											
AGPAT4	56895	broad.mit.edu	37	chr6	161567700	161567700	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatacagtttccagtaacGgtgctgccgttttttgtttt	8	8	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161567700	T	T	161567700	1	4	226	0	1	0	0	0	0	0	0	0	389	1131	39	1		1	AGPAT4	6	161567700	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	482509	161567700	9547367	571	171326											
PARK2	5071	broad.mit.edu	37	chr6	162864322	162864322	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcggcatcccaagaacGgccgccaagggagactcacc	13	15	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162864322	A	A	162864322	1	1	226	0	1	0	0	0	0	0	0	0	11543	1131	39	4		4	PARK2	6	162864322	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1296622	162864322	8250745	572	171327											
C6orf118	168090	broad.mit.edu	37	chr6	165715189	165715189	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtctgcgctggtggctcCggccaggtaggagctgacat	15	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	165715189	T	T	165715189	3	4	226	1	0	0	0	0	1	0	0	0	2346	661	23	4	819	4	C6orf118	6	165715189	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2850867	165715189	5399878	573	171328											
SUN1	23353	broad.mit.edu	37	chr7	900023	900023	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggaataacagaggcggtgAgtcggcgagtcggcggcaag	18	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	900023	T	T	900023	1	4	226	0	1	0	0	0	0	0	0	0	15509	319	11	5		5	SUN1	7	900023	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08		900023	158238640	574	171329											
MICALL2	79778	broad.mit.edu	37	chr7	1474755	1474755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acccagcttctcaatcatgtCccgcagcatctgatcctcct	5	17	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1474755	A	A	1474755	3	1	226	1	0	0	0	0	1	0	0	0	9667	855	30	3	102	3	MICALL2	7	1474755	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	574732	1474755	157663908	575	171330											
INTS1	26173	broad.mit.edu	37	chr7	1517559	1517560	+	Missense_Mutation	DNP	CA	AG	AG													tggggggacctcacctcgatCagcccctggaggactgcgca							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	1517560	AG	AG	1517559	3	1	226	1	0	0	0	0	1	0	0	0	7845	813	29	3	1988	3	INTS1	7	1517559	Missense_Mutation	DNP	CA	TCGA-91-6829-01A-21D-1855-08	42804	1517559	157621104	576	171331											
INTS1	26173	broad.mit.edu	37	chr7	1536898	1536898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagggcccgcgaggccCgcaggtagtcgtccttgttg	16	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1536898	A	A	1536898	3	1	226	1	0	0	0	0	1	0	0	0	7845	652	23	1	5246	1	INTS1	7	1536898	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	19339	1536898	157601765	577	171332											
MAD1L1	8379	broad.mit.edu	37	chr7	2255624	2255624	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggagcagcccgttggtctCtctcatctccctggcagtgc	11	15	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2255624	T	T	2255624	3	4	226	1	0	0	0	0	1	0	0	0	9235	922	32	4	1380	4	MAD1L1	7	2255624	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	718726	2255624	156883039	578	171333											
MAD1L1	8379	broad.mit.edu	37	chr7	2259101	2259101	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcgttgatggtctaaaagtaGaggggaccagagagccgctc	15	8	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2259101	C	C	2259101	1	2	226	0	1	0	0	0	0	0	0	0	9235	957	33	4		4	MAD1L1	7	2259101	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3477	2259101	156879562	579	171334											
MAD1L1	8379	broad.mit.edu	37	chr7	2260696	2260696	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcaaggcctagtgcgcaggGagggcttccctgaggagcgg	18	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2260696	A	A	2260696	1	1	226	0	1	0	0	0	0	0	0	0	9235	1189	41	4		4	MAD1L1	7	2260696	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1595	2260696	156877967	580	171335											
SNX8	29886	broad.mit.edu	37	chr7	2303980	2303980	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccgcattgtcgatggcCcgcgatgcgatccgctcggc	13	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2303980	A	A	2303980	2	1	226	1	0	0	0	0	0	0	0	1	15022	610	22	2		2	SNX8	7	2303980	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	43284	2303980	156834683	581	171336											
KIAA0415	9907	broad.mit.edu	37	chr7	4830249	4830249	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcgctggcctcccacagCcgctcctgacccaggaggcc	13	19	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4830249	T	T	4830249	1	4	226	0	1	0	0	0	0	0	0	0	8245	754	26	4		4	KIAA0415	7	4830249	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2526269	4830249	154308414	582	171337											
FSCN1	6624	broad.mit.edu	37	chr7	5632887	5632887	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcgctgcagtccgaggCgcaccggcgctacttcggcg	15	15	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5632887	A	A	5632887	3	1	226	1	0	0	0	0	1	0	0	0	6127	768	27	3	322	3	FSCN1	7	5632887	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	802638	5632887	153505776	583	171338											
RNF216	54476	broad.mit.edu	37	chr7	5662683	5662684	+	Missense_Mutation	DNP	CG	GC	GC													ggcagggggaagggtgggtgCgcgaaggcatagggtggcat					rs139859373		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	GC	5662684	GC	GC	5662683	3	3	226	1	0	0	0	0	1	0	0	0	13591	755	27	4	195	4	RNF216	7	5662683	Missense_Mutation	DNP	CG	TCGA-91-6829-01A-21D-1855-08	29796	5662683	153475980	584	171339											
RNF216	54476	broad.mit.edu	37	chr7	5752387	5752387	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccgcaacctcctcctcGgcttttcgctcatagtactt	7	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5752387	A	A	5752387	2	1	226	1	0	0	0	0	0	0	0	1	13591	1103	39	4		4	RNF216	7	5752387	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	89704	5752387	153386276	585	171340											
COL28A1	340267	broad.mit.edu	37	chr7	7412926	7412926	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgtatgtgccttcccccaGatactgcatgttgtccacag	9	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7412926	C	C	7412926	3	2	226	1	0	0	0	0	1	0	0	0	3718	933	33	4	782	4	COL28A1	7	7412926	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1660539	7412926	151725737	586	171341											
THSD7A	221981	broad.mit.edu	37	chr7	11418709	11418709	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttcacctggcccaaatgGctgtagaaaccaggtccttc	9	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11418709	A	A	11418709	3	1	226	1	0	0	0	0	1	0	0	0	16002	1203	42	4	196	4	THSD7A	7	11418709	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4005783	11418709	147719954	587	171342											
DGKB	1607	broad.mit.edu	37	chr7	14378256	14378256	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actctccccaaagattggatCctccatgcatgcttggtata	7	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14378256	A	A	14378256	3	1	226	1	0	0	0	0	1	0	0	0	4506	855	30	3	436	3	DGKB	7	14378256	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2959547	14378256	144760407	588	171343											
DGKB	1607	broad.mit.edu	37	chr7	14797349	14797349	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacatcctttaatttcttTgtagaatctataaaaaacag	4	6	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14797349	A	A	14797349	2	1	226	1	0	0	0	0	0	0	0	1	4506	1799	63	5		5	DGKB	7	14797349	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	419093	14797349	144341314	589	171344											
TMEM195	392636	broad.mit.edu	37	chr7	15430530	15430530	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcaataacgatttctgCctatgagacaaaatattaga	6	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15430530	G	G	15430530	3	3	226	1	0	0	0	0	1	0	0	0	16240	753	26	4	688	4	TMEM195	7	15430530	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	633181	15430530	143708133	590	171345											
SNX13	23161	broad.mit.edu	37	chr7	17836494	17836494	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttttcctgctactcttgttCtcattcgaatacttttatct	3	10	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17836494	T	T	17836494	3	4	226	1	0	0	0	0	1	0	0	0	14998	913	32	4	299	4	SNX13	7	17836494	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2405964	17836494	141302169	591	171346											
FERD3L	222894	broad.mit.edu	37	chr7	19184470	19184470	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagacgaggaagggcagaCtctccacaccaggctcagcc	11	15	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19184470	A	A	19184470	1	1	226	0	1	0	0	0	0	0	0	0	5873	580	20	3		3	FERD3L	7	19184470	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	1347976	19184470	139954193	592	171347											
TMEM196	256130	broad.mit.edu	37	chr7	19761724	19761724	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccattaaatatcagctGtggtcctccattgctcatgt	6	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19761724	T	T	19761724	3	4	226	1	0	0	0	0	1	0	0	0	16241	1386	48	3	29	3	TMEM196	7	19761724	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	577254	19761724	139376939	593	171348											
ITGB8	3696	broad.mit.edu	37	chr7	20421493	20421493	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaaaaacaacgtctatgtCaaatcgacaaccatggtaat	6	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20421493	T	T	20421493	2	4	226	1	0	0	0	0	0	0	0	1	7971	813	29	4		4	ITGB8	7	20421493	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	659769	20421493	138717170	594	171349											
ABCB5	340273	broad.mit.edu	37	chr7	20762679	20762679	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtcttaacacaaaatgcaaCtaacatgggactttcagtta	6	9	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20762679	G	G	20762679	3	3	226	1	0	0	0	0	1	0	0	0	44	565	20	4	2581	4	ABCB5	7	20762679	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	341186	20762679	138375984	595	171350											
DNAH11	8701	broad.mit.edu	37	chr7	21654942	21654942	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atttagtagttcttttacatAtgcagtttgtggagcctata	8	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21654942	T	T	21654942	1	4	226	0	1	0	0	0	0	0	0	0	4639	464	16	5		5	DNAH11	7	21654942	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	892263	21654942	137483721	596	171351											
IGF2BP3	10643	broad.mit.edu	37	chr7	23390906	23390906	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctcatgaacacccaccaCacactcagcatactcactta	2	16	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23390906	A	A	23390906	1	1	226	0	1	0	0	0	0	0	0	0	7645	493	17	3		3	IGF2BP3	7	23390906	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1735964	23390906	135747757	597	171352											
NPY	4852	broad.mit.edu	37	chr7	24329306	24329306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accaccaggcttctagactaGgggagatttcggcagaaatg	12	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24329306	T	T	24329306	1	4	226	0	1	0	0	0	0	0	0	0	10702	1015	35	2		2	NPY	7	24329306	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	938400	24329306	134809357	598	171353											
HOXA9	3205	broad.mit.edu	37	chr7	27203226	27203226	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataagcccaaatggcatcacTcgtcttttgctcggtctttg	8	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27203226	C	C	27203226	3	2	226	1	0	0	0	0	1	0	0	0	7365	1551	54	5	7	5	HOXA9	7	27203226	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	2873920	27203226	131935437	599	171354											
C7orf16	10842	broad.mit.edu	37	chr7	31736514	31736514	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgtctataaatatgcacAgtcctcatatattaggatat	6	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31736514	T	T	31736514	1	4	226	0	1	0	0	0	0	0	0	0	2403	203	7	5		5	C7orf16	7	31736514	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	4533288	31736514	127402149	600	171355											
TBX20	57057	broad.mit.edu	37	chr7	35288379	35288379	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgttgtccacagggacgAtgtccatcaggactatgtac	10	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35288379	G	G	35288379	3	3	226	1	0	0	0	0	1	0	0	0	15778	333	12	5	913	5	TBX20	7	35288379	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	3551865	35288379	123850284	601	171356											
AMPH	273	broad.mit.edu	37	chr7	38457330	38457330	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatggagcatgtttggcccAagtgaggcaaagatgagagc	14	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38457330	T	T	38457330	1	4	226	0	1	0	0	0	0	0	0	0	588	145	5	5		5	AMPH	7	38457330	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3168951	38457330	120681333	602	171357											
HECW1	23072	broad.mit.edu	37	chr7	43447346	43447346	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggtgagtgctgtgggcCctgaaaaaaagcccaagtaa	13	9	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43447346	G	G	43447346	1	3	226	0	1	0	0	0	0	0	0	0	7109	638	22	4		4	HECW1	7	43447346	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4990016	43447346	115691317	603	171358											
DBNL	28988	broad.mit.edu	37	chr7	44100527	44100527	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgagtgaggctgagggcaCatcttgcccttcccctctca	10	13	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44100527	T	T	44100527	1	4	226	0	1	0	0	0	0	0	0	0	4288	493	17	4		4	DBNL	7	44100527	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	653181	44100527	115038136	604	171359											
MYL7	58498	broad.mit.edu	37	chr7	44180373	44180373	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccatcacgattctggtcgAtacagctgaaggcctgtggg	13	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44180373	T	T	44180373	3	4	226	1	0	0	0	0	1	0	0	0	10147	333	12	5	416	5	MYL7	7	44180373	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	79846	44180373	114958290	605	171360											
GCK	2645	broad.mit.edu	37	chr7	44192063	44192063	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtcagcctcagggacaCccacaggctggccttgggct	14	13	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44192063	A	A	44192063	1	1	226	0	1	0	0	0	0	0	0	0	6355	522	18	3		3	GCK	7	44192063	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	11690	44192063	114946600	606	171361											
ADCY1	107	broad.mit.edu	37	chr7	45742933	45742933	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cggtgggaacaagtgaaggcAgcgtgagtggatgggactaa	18	5	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45742933	T	T	45742933	1	4	226	0	1	0	0	0	0	0	0	0	292	203	7	5		5	ADCY1	7	45742933	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1550870	45742933	113395730	607	171362											
TNS3	64759	broad.mit.edu	37	chr7	47385928	47385928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcagcttcctgagtctccCgcccaggggctgttcagcag	12	15	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47385928	A	A	47385928	3	1	226	1	0	0	0	0	1	0	0	0	16467	652	23	1	2085	1	TNS3	7	47385928	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1642995	47385928	111752735	608	171363											
PKD1L1	168507	broad.mit.edu	37	chr7	47882629	47882629	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatatagctgatggcccggCagggaagcttcttgcagaaa	13	9	1	2	rs148252365		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47882629	T	T	47882629	2	4	226	1	0	0	0	0	0	0	0	1	12059	697	25	4		4	PKD1L1	7	47882629	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	496701	47882629	111256034	609	171364											
PKD1L1	168507	broad.mit.edu	37	chr7	47930375	47930375	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgatacctgttggagaagtCatcggagtggctgaggggag	18	5	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47930375	A	A	47930375	1	1	226	0	1	0	0	0	0	0	0	0	12059	841	29	3		3	PKD1L1	7	47930375	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	47746	47930375	111208288	610	171365											
ABCA13	154664	broad.mit.edu	37	chr7	48319268	48319268	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttaagtagaatagctctctGgaggaaaggacttctgttta	10	5	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48319268	A	A	48319268	4	1	226	1	0	0	0	0	0	1	0	0	31	1357	47	4	8376	4	ABCA13	7	48319268	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	388893	48319268	110819395	611	171366											
ABCA13	154664	broad.mit.edu	37	chr7	48563770	48563770	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaattttttacaaatctctGacctttttgcctcttctaga	3	10	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48563770	T	T	48563770	1	4	226	0	1	0	0	0	0	0	0	0	31	1305	45	3		3	ABCA13	7	48563770	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	244502	48563770	110574893	612	171367											
POM121L12	285877	broad.mit.edu	37	chr7	53104131	53104131	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcttggccttccgtgcTggtccagcccgccccatccg	11	17	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53104131	A	A	53104131	3	1	226	1	0	0	0	0	1	0	0	0	12336	1580	55	5	769	5	POM121L12	7	53104131	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	4540361	53104131	106034532	613	171368											
LANCL2	55915	broad.mit.edu	37	chr7	55433941	55433941	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagtcggcggcctggcCgcagaggcgccggaggggga	22	10	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55433941	T	T	55433941	1	4	226	0	1	0	0	0	0	0	0	0	8693	667	23	4		4	LANCL2	7	55433941	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2329810	55433941	103704722	614	171369											
ZNF479	90827	broad.mit.edu	37	chr7	57199986	57199986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcacgatgacagacccagCactcaccatttctcggcttc	6	16	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57199986	A	A	57199986	1	1	226	0	1	0	0	0	0	0	0	0	18060	725	25	3		3	ZNF479	7	57199986	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1766045	57199986	101938677	615	171370											
ZNF716	441234	broad.mit.edu	37	chr7	57528880	57528880	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaagaattcatactggagAgaaaccctacagatgtgagg	10	6	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57528880	T	T	57528880	3	4	226	1	0	0	0	0	1	0	0	0	18247	304	11	5	727	5	ZNF716	7	57528880	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	328894	57528880	101609783	616	171371											
WBSCR17	64409	broad.mit.edu	37	chr7	71130289	71130289	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctttatatattaaaatgtAttttacgtttatgcaaagtc	6	4	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71130289	G	G	71130289	1	3	226	0	1	0	0	0	0	0	0	0	17391	464	16	5		5	WBSCR17	7	71130289	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	13601409	71130289	88008374	617	171372											
MLXIPL	51085	broad.mit.edu	37	chr7	73008567	73008567	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccctccacccccgaggcTgggtccctctagcaggcagg	12	18	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73008567	A	A	73008567	1	1	226	0	1	0	0	0	0	0	0	0	9730	1595	55	5		5	MLXIPL	7	73008567	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1878278	73008567	86130096	618	171373											
WBSCR28	135886	broad.mit.edu	37	chr7	73275552	73275552	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttcctccagtcagatccAgccttttggggatcctgttg	9	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73275552	T	T	73275552	3	4	226	1	0	0	0	0	1	0	0	0	17394	188	7	5	30	5	WBSCR28	7	73275552	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	266985	73275552	85863111	619	171374											
GTF2IRD1	9569	broad.mit.edu	37	chr7	74004251	74004251	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggaactcttcaacgagAaatacggtcagtgcctgtgg	12	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74004251	T	T	74004251	4	4	226	1	0	0	0	0	0	1	0	0	6933	247	9	5	2523	5	GTF2IRD1	7	74004251	Nonsense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	728699	74004251	85134412	620	171375											
SEMA3C	10512	broad.mit.edu	37	chr7	80433294	80433294	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatataataatgatgatgaaTaaatgttacattaaatgctt	5	2	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80433294	A	A	80433294	1	1	226	0	1	0	0	0	0	0	0	0	14139	1421	49	5		5	SEMA3C	7	80433294	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	6429043	80433294	78705369	621	171376											
HGF	3082	broad.mit.edu	37	chr7	81340889	81340889	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatatatgcatatatctgtTatataaaaccaaatatatat	2	5	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81340889	C	C	81340889	1	2	226	0	1	0	0	0	0	0	0	0	7152	1769	61	5		5	HGF	7	81340889	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	907595	81340889	77797774	622	171377											
HGF	3082	broad.mit.edu	37	chr7	81381537	81381537	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaggatttcgacagtagTtttcctgtaggtctttaccc	9	10	1	0	rs73381183	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	81381537	C	C	81381537	3	2	226	1	0	0	0	0	1	0	0	0	7152	1725	60	5	1738	5	HGF	7	81381537	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	40648	81381537	77757126	623	171378											
GRM3	2913	broad.mit.edu	37	chr7	86415918	86415918	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcagaagcccaacgcgcgCgtcgtggtcctcttcatgcg	12	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	86415918	G	G	86415918	2	3	226	1	0	0	0	0	0	0	0	1	6864	755	27	4		4	GRM3	7	86415918	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	5034381	86415918	72722745	624	171379											
KIAA1324L	222223	broad.mit.edu	37	chr7	86570733	86570733	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcagttactttacttcaTgtaaccagagaaggtagaat	9	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86570733	C	C	86570733	1	2	226	0	1	0	0	0	0	0	0	0	8294	1479	51	5		5	KIAA1324L	7	86570733	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	154815	86570733	72567930	625	171380											
ABCB4	5244	broad.mit.edu	37	chr7	87056020	87056020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaatttcaataattgtagCaaaactacaaagtaaaagac	5	5	1	2	rs138467346	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87056020	A	A	87056020	1	1	226	0	1	0	0	0	0	0	0	0	43	725	25	3		3	ABCB4	7	87056020	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	485287	87056020	72082643	626	171381											
ABCB1	5243	broad.mit.edu	37	chr7	87179246	87179246	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccatggtgacattttcaCggccatagcgaatgttttca	8	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87179246	A	A	87179246	3	1	226	1	0	0	0	0	1	0	0	0	40	536	19	3	2431	3	ABCB1	7	87179246	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	123226	87179246	71959417	627	171382											
AKAP9	10142	broad.mit.edu	37	chr7	91691630	91691630	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaactctttttgaaaGgcaaattcaggaaaaaactg	7	5	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91691630	T	T	91691630	3	4	226	1	0	0	0	0	1	0	0	0	459	1000	35	2	5901	2	AKAP9	7	91691630	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4512384	91691630	67447033	628	171383											
AKAP9	10142	broad.mit.edu	37	chr7	91729207	91729207	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccatttttagcatctccAtatatgagaattagtgcatg	7	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91729207	G	G	91729207	1	3	226	0	1	0	0	0	0	0	0	0	459	232	8	5		5	AKAP9	7	91729207	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	37577	91729207	67409456	629	171384											
CDK6	1021	broad.mit.edu	37	chr7	92244466	92244466	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgaggcctcaggctgtattCagctccgaggtgttctggct	13	11	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92244466	T	T	92244466	2	4	226	1	0	0	0	0	0	0	0	1	3178	813	29	4		4	CDK6	7	92244466	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	515259	92244466	66894197	630	171385											
COL1A2	1278	broad.mit.edu	37	chr7	94039100	94039100	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtattcctggccctgttggTgctgccggtgctactggtgc	15	11	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	94039100	C	C	94039100	2	2	226	1	0	0	0	0	0	0	0	1	3710	1683	59	5		5	COL1A2	7	94039100	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	1794634	94039100	65099563	631	171386											
SHFM1	7979	broad.mit.edu	37	chr7	96339207	96339207	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttggggaaagaatacgGgagcagcgcgaggaatgctg	17	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96339207	T	T	96339207	1	4	226	0	1	0	0	0	0	0	0	0	14391	1247	43	2		2	SHFM1	7	96339207	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	2300107	96339207	62799456	632	171387											
TECPR1	25851	broad.mit.edu	37	chr7	97862145	97862145	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accggggcacccacctgctcCacggcctgctcgtagtgtct	11	17	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97862145	G	G	97862145	2	3	226	1	0	0	0	0	0	0	0	1	15865	581	21	4		4	TECPR1	7	97862145	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1522938	97862145	61276518	633	171388											
TMEM130	222865	broad.mit.edu	37	chr7	98448981	98448981	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcgtattggtggtggtGgcaggatggacaggcttgtg	20	4	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98448981	A	A	98448981	1	1	226	0	1	0	0	0	0	0	0	0	16166	1363	47	4		4	TMEM130	7	98448981	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	586836	98448981	60689682	634	171389											
ARPC1B	10095	broad.mit.edu	37	chr7	98985702	98985702	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtaaccgtattgtgacctgCggcacagaccgcaacgccta	10	13	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98985702	A	A	98985702	4	1	226	1	0	0	0	0	0	1	0	0	974	776	27	3	220	3	ARPC1B	7	98985702	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	536721	98985702	60152961	635	171390											
GAL3ST4	79690	broad.mit.edu	37	chr7	99757918	99757918	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacatagagagcccagtccAggttgttccaggctcgggcc	14	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99757918	T	T	99757918	3	4	226	1	0	0	0	0	1	0	0	0	6262	188	7	5	370	5	GAL3ST4	7	99757918	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	772216	99757918	59380745	636	171391											
TSC22D4	81628	broad.mit.edu	37	chr7	100071909	100071909	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctacctatcatcgtcgCtgtctaggtgaccactgatg	8	14	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100071909	T	T	100071909	3	4	226	1	0	0	0	0	1	0	0	0	16735	797	28	4	282	4	TSC22D4	7	100071909	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	313991	100071909	59066754	637	171392											
ZAN	7455	broad.mit.edu	37	chr7	100333401	100333401	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctctagggacaactgtgagTtggaaaccaggagtgctaag	14	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100333401	A	A	100333401	1	1	226	0	1	0	0	0	0	0	0	0	17640	1740	60	5		5	ZAN	7	100333401	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	261492	100333401	58805262	638	171393											
SLC12A9	56996	broad.mit.edu	37	chr7	100451828	100451828	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgctcagccatggccagCgagagctcacctctgctggc	12	15	3	1	rs145131568		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100451828	A	A	100451828	3	1	226	1	0	0	0	0	1	0	0	0	14503	767	27	3	11	3	SLC12A9	7	100451828	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	118427	100451828	58686835	639	171394											
DNAJC2	27000	broad.mit.edu	37	chr7	102966941	102966941	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaaacctggaagactacaAtaaacaagccaacagggcac	8	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102966941	G	G	102966941	1	3	226	0	1	0	0	0	0	0	0	0	4679	116	4	5		5	DNAJC2	7	102966941	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2515113	102966941	56171722	640	171395											
RELN	5649	broad.mit.edu	37	chr7	103234627	103234627	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagtggtagcatagagaGgtaacaaaaaattaagtaca	11	3	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103234627	T	T	103234627	1	4	226	0	1	0	0	0	0	0	0	0	13328	1015	35	2		2	RELN	7	103234627	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	267686	103234627	55904036	641	171396											
PUS7	54517	broad.mit.edu	37	chr7	105111238	105111239	+	Frame_Shift_Ins	INS	-	A	A													tagttttctgagggcagcagINSttgggtctttggtctttgcc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105111239	A	A	105111238	7	5	226	1	0	1	1	0	0	0	0	0	12941	1029	36	0	714	0	PUS7	7	105111238	Frame_Shift_Ins	INS	-	TCGA-91-6829-01A-21D-1855-08	1876611	105111238	54027425	642	171397											
PIK3CG	5294	broad.mit.edu	37	chr7	106508033	106508033	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagaactataaacagccCgtggtgctgagagaggacaa	13	8	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106508033	A	A	106508033	2	1	226	1	0	0	0	0	0	0	0	1	12011	639	23	1		1	PIK3CG	7	106508033	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1396795	106508033	52630630	643	171398											
COG5	10466	broad.mit.edu	37	chr7	106898859	106898859	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaatttcaaaagaatgtgtCagaatgataattctctctct	5	7	5	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106898859	G	G	106898859	1	3	226	0	1	0	0	0	0	0	0	0	3693	841	29	4		4	COG5	7	106898859	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	390826	106898859	52239804	644	171399											
SLC26A4	5172	broad.mit.edu	37	chr7	107314547	107314547	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacattttttaaaccctatGcagacacattgaacatttgt	4	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107314547	A	A	107314547	1	1	226	0	1	0	0	0	0	0	0	0	14633	1334	46	4		4	SLC26A4	7	107314547	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	415688	107314547	51824116	645	171400											
SLC26A4	5172	broad.mit.edu	37	chr7	107335136	107335137	+	Frame_Shift_Del	DEL	TG	-	-													gctgtgtgacattcctcgtcTgtggagacagaataagattg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107335137	-	-	107335136	7	5	226	1	0	1	0	1	0	0	0	0	14633	1580	55	0	1454	0	SLC26A4	7	107335136	Frame_Shift_Del	DEL	TG	TCGA-91-6829-01A-21D-1855-08	20589	107335136	51803527	646	171401											
NRCAM	4897	broad.mit.edu	37	chr7	107838573	107838573	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaaatagaaagtatttAttcctatttgcttaaaagat	5	3	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107838573	G	G	107838573	1	3	226	0	1	0	0	0	0	0	0	0	10739	464	16	5		5	NRCAM	7	107838573	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	503437	107838573	51300090	647	171402											
PNPLA8	50640	broad.mit.edu	37	chr7	108155042	108155042	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taaccacctactaaagcttgTacaccttccgtgggacgaga	8	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108155042	A	A	108155042	2	1	226	1	0	0	0	0	0	0	0	1	12266	1625	57	5		5	PNPLA8	7	108155042	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	316469	108155042	50983621	648	171403											
PPP1R3A	5506	broad.mit.edu	37	chr7	113518241	113518241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcaggtttagactcaGgataagggtgcttctcaata	9	8	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113518241	T	T	113518241	3	4	226	1	0	0	0	0	1	0	0	0	12472	1000	35	2	466	2	PPP1R3A	7	113518241	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	5363199	113518241	45620422	649	171404											
FOXP2	93986	broad.mit.edu	37	chr7	114299490	114299490	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaactctcataaggcaggtAagtagaaggaaaattaactt	9	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	114299490	G	G	114299490	1	3	226	0	1	0	0	0	0	0	0	0	6087	377	13	5		5	FOXP2	7	114299490	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	781249	114299490	44839173	650	171405											
TES	26136	broad.mit.edu	37	chr7	115857964	115857964	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agttagataatggggaattaGagcgataaggatatgcatga	13	2	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115857964	T	T	115857964	1	4	226	0	1	0	0	0	0	0	0	0	15887	957	33	3		3	TES	7	115857964	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1558474	115857964	43280699	651	171406											
ANKRD7	56311	broad.mit.edu	37	chr7	117876164	117876164	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtaaaatttcttctggagAaaggggctgatgtgaatgct	13	4	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117876164	T	T	117876164	4	4	226	1	0	0	0	0	0	1	0	0	686	247	9	5	552	5	ANKRD7	7	117876164	Nonsense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	2018200	117876164	41262499	652	171407											
PTPRZ1	5803	broad.mit.edu	37	chr7	121624102	121624102	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acttacaaaacaattttcgaGagcaacagtacaagttctct	5	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121624102	T	T	121624102	4	4	226	1	0	0	0	0	0	1	0	0	12922	943	33	3	889	3	PTPRZ1	7	121624102	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3747938	121624102	37514561	653	171408											
PTPRZ1	5803	broad.mit.edu	37	chr7	121637825	121637825	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccttaggttaataaaataGaagtattttccacggaccag	7	7	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121637825	A	A	121637825	1	1	226	0	1	0	0	0	0	0	0	0	12922	957	33	4		4	PTPRZ1	7	121637825	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	13723	121637825	37500838	654	171409											
RNF133	168433	broad.mit.edu	37	chr7	122338610	122338610	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atcactccactggctcccttCtcagttgccactttaatttt	4	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122338610	A	A	122338610	3	1	226	1	0	0	0	0	1	0	0	0	13550	912	32	3	771	3	RNF133	7	122338610	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	700785	122338610	36800053	655	171410											
IQUB	154865	broad.mit.edu	37	chr7	123150169	123150169	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtccacaaacagatacagAattatgtgttaatttttaat	5	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123150169	G	G	123150169	1	3	226	0	1	0	0	0	0	0	0	0	7890	261	9	5		5	IQUB	7	123150169	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	811559	123150169	35988494	656	171411											
GRM8	2918	broad.mit.edu	37	chr7	126544245	126544245	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taccacaattatgaatattaCaagaccagatttaggaagtt	6	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126544245	T	T	126544245	1	4	226	0	1	0	0	0	0	0	0	0	6869	493	17	4		4	GRM8	7	126544245	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3394076	126544245	32594418	657	171412											
ZNF800	168850	broad.mit.edu	37	chr7	127013766	127013766	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ataacgagatgactttttatGaaccacagttatatgtcgta	7	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127013766	A	A	127013766	3	1	226	1	0	0	0	0	1	0	0	0	18298	1290	45	4	378	4	ZNF800	7	127013766	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	469521	127013766	32124897	658	171413											
FSCN3	29999	broad.mit.edu	37	chr7	127239488	127239488	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgctccttccttgtattgCgaggtcgttatggctatgtg	11	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127239488	A	A	127239488	2	1	226	1	0	0	0	0	0	0	0	1	6129	760	27	3		3	FSCN3	7	127239488	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	225722	127239488	31899175	659	171414											
UBE2H	7328	broad.mit.edu	37	chr7	129592300	129592300	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgccctgggcatccccacaCcgccccccacacacagcccg	8	23	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129592300	A	A	129592300	1	1	226	0	1	0	0	0	0	0	0	0	16984	522	18	3		3	UBE2H	7	129592300	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2352812	129592300	29546363	660	171415											
KLHDC10	23008	broad.mit.edu	37	chr7	129761849	129761849	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtaagtttacattctttaatCaagtgttaacaagtcggtct	7	6	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129761849	G	G	129761849	1	3	226	0	1	0	0	0	0	0	0	0	8426	841	29	4		4	KLHDC10	7	129761849	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	169549	129761849	29376814	661	171416											
CPA5	93979	broad.mit.edu	37	chr7	130008265	130008265	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctagatgtggccagtgggAtcaccgtcgactgggcctat	13	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130008265	C	C	130008265	3	2	226	1	0	0	0	0	1	0	0	0	3825	333	12	5	1180	5	CPA5	7	130008265	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	246416	130008265	29130398	662	171417											
CPA5	93979	broad.mit.edu	37	chr7	130008287	130008287	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccgtcgactgggcctatgAcagtggcatcaagtacgcct	11	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130008287	T	T	130008287	3	4	226	1	0	0	0	0	1	0	0	0	3825	275	10	5	1202	5	CPA5	7	130008287	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	22	130008287	29130376	663	171418											
EXOC4	60412	broad.mit.edu	37	chr7	132937786	132937786	+	5'Flank	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcacccattggtggagactCctgcggggtcaaatacagaa	11	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132937786	A	A	132937786	1	1	226	0	1	0	0	0	0	0	0	0	5348	870	30	3		3	EXOC4	7	132937786	5'Flank	SNP	C	TCGA-91-6829-01A-21D-1855-08	2929499	132937786	26200877	664	171419											
SLC35B4	84912	broad.mit.edu	37	chr7	133986824	133986824	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaaataaatatccccacaGacaccagggcaatggaggta	9	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133986824	T	T	133986824	3	4	226	1	0	0	0	0	1	0	0	0	14692	942	33	3	636	3	SLC35B4	7	133986824	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1049038	133986824	25151839	665	171420											
AKR1B10	57016	broad.mit.edu	37	chr7	134222393	134222393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaggagattgctgcaaagCacaaaaaaaccgcagcccag	9	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134222393	A	A	134222393	3	1	226	1	0	0	0	0	1	0	0	0	467	710	25	3	747	3	AKR1B10	7	134222393	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	235569	134222393	24916270	666	171421											
AKR1B15	441282	broad.mit.edu	37	chr7	134254043	134254044	+	Intron	DNP	GC	AA	AA													tgcatcgtggatcttaatcaGctttgttatagatggcctga							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	134254044	AA	AA	134254043	1	1	226	0	1	0	0	0	0	0	0	0	468	986	34	4		4	AKR1B15	7	134254043	Intron	DNP	GC	TCGA-91-6829-01A-21D-1855-08	31650	134254043	24884620	667	171422											
NUP205	23165	broad.mit.edu	37	chr7	135272444	135272444	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacttaatgcttttggtaaGccattatattagaaagcttg	7	6	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135272444	A	A	135272444	1	1	226	0	1	0	0	0	0	0	0	0	10854	986	34	4		4	NUP205	7	135272444	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1018401	135272444	23866219	668	171423											
OR9A4	130075	broad.mit.edu	37	chr7	141618891	141618891	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgccctggagatcctggtCacaaccataatcgtccccgt	8	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141618891	T	T	141618891	2	4	226	1	0	0	0	0	0	0	0	1	11343	813	29	4		4	OR9A4	7	141618891	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	6346447	141618891	17519772	669	171424											
EPHB6	2051	broad.mit.edu	37	chr7	142566119	142566119	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtcattgggacaggtaCagcagggccaaagcagggat	17	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142566119	A	A	142566119	1	1	226	0	1	0	0	0	0	0	0	0	5220	493	17	3		3	EPHB6	7	142566119	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	947228	142566119	16572544	670	171425											
TAS2R60	338398	broad.mit.edu	37	chr7	143141164	143141164	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacttggacaatgcccactGctgtctttttcatttgcatg	7	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143141164	A	A	143141164	3	1	226	1	0	0	0	0	1	0	0	0	15704	1319	46	4	621	4	TAS2R60	7	143141164	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	575045	143141164	15997499	671	171426											
ARHGEF35	445328	broad.mit.edu	37	chr7	143884027	143884027	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaactgtgacatatcaaaGtactgatagaagtttttcct	7	6	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143884027	A	A	143884027	3	1	226	1	0	0	0	0	1	0	0	0	907	1029	36	4	8	4	ARHGEF35	7	143884027	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	742863	143884027	15254636	672	171427											
CNTNAP2	26047	broad.mit.edu	37	chr7	146471396	146471396	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccacttgtctctggactccCccatgtggctttcagcagct	9	15	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146471396	T	T	146471396	3	4	226	1	0	0	0	0	1	0	0	0	3679	623	22	4	137	4	CNTNAP2	7	146471396	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2587369	146471396	12667267	673	171428											
ZNF777	27153	broad.mit.edu	37	chr7	149152848	149152848	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccctggagagaagtctctTgctcagaagcggcagaacac	13	11	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149152848	A	A	149152848	3	1	226	1	0	0	0	0	1	0	0	0	18279	1812	63	5	2249	5	ZNF777	7	149152848	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	2681452	149152848	9985815	674	171429											
GIMAP4	55303	broad.mit.edu	37	chr7	150269316	150269316	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaacagcatccttggccGgaaagtgtttcattctggca	11	9	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150269316	A	A	150269316	3	1	226	1	0	0	0	0	1	0	0	0	6445	1116	39	4	164	4	GIMAP4	7	150269316	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1116468	150269316	8869347	675	171430											
ABP1	26	broad.mit.edu	37	chr7	150555801	150555801	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggtagaatgaggaggttTcagttctggcagcttgattc	15	5	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150555801	A	A	150555801	1	1	226	0	1	0	0	0	0	0	0	0	98	1798	62	5		5	ABP1	7	150555801	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	286485	150555801	8582862	676	171431											
ACCN3	9311	broad.mit.edu	37	chr7	150748263	150748263	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccggtggcccgcagatgcCatgcttcgcaaggactcgtg	14	14	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150748263	A	A	150748263	2	1	226	1	0	0	0	0	0	0	0	1	130	581	21	2		2	ACCN3	7	150748263	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	192462	150748263	8390400	677	171432											
SLC4A2	6522	broad.mit.edu	37	chr7	150771574	150771574	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgaggacacctatacccAggtaaggtgctgcccacagc	10	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150771574	G	G	150771574	3	3	226	1	0	0	0	0	1	0	0	0	14768	202	7	5	2945	5	SLC4A2	7	150771574	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	23311	150771574	8367089	678	171433											
SMARCD3	6604	broad.mit.edu	37	chr7	150936139	150936139	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccggggcaaaatgctgGggcccgggacacggctgaaa	17	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150936139	T	T	150936139	1	4	226	0	1	0	0	0	0	0	0	0	14893	1247	43	2		2	SMARCD3	7	150936139	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	164565	150936139	8202524	679	171434											
WDR86	349136	broad.mit.edu	37	chr7	151082056	151082056	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggaacgagcactgccaTtggacgctgatgattggcag	14	8	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	151082056	G	G	151082056	1	3	226	0	1	0	0	0	0	0	0	0	17461	1508	52	5		5	WDR86	7	151082056	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	145917	151082056	8056607	680	171435											
MLL3	58508	broad.mit.edu	37	chr7	151877045	151877045	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagacctaatgttcccaggaTagggaggtgggggtctggtg	18	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151877045	C	C	151877045	3	2	226	1	0	0	0	0	1	0	0	0	9715	1406	49	5	7511	5	MLL3	7	151877045	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	794989	151877045	7261618	681	171436											
MYOM2	9172	broad.mit.edu	37	chr8	2007299	2007299	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatggcagtctgatttgcCaggcggctgaaccgggaaag	15	8	1	3	rs142466938	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2007299	A	A	2007299	3	1	226	1	0	0	0	0	1	0	0	0	10186	595	21	2	604	2	MYOM2	8	2007299	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08		2007299	144356723	682	171437											
MYOM2	9172	broad.mit.edu	37	chr8	2054306	2054306	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agctgtacttaaagaatccgGataaggaggatttagggact	12	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2054306	A	A	2054306	3	1	226	1	0	0	0	0	1	0	0	0	10186	1174	41	4	3003	4	MYOM2	8	2054306	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	47007	2054306	144309716	683	171438											
MYOM2	9172	broad.mit.edu	37	chr8	2088500	2088500	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttactgatgtggtcaataCattcgtaacagccagaataa	8	7	1	2	rs147850980	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2088500	A	A	2088500	1	1	226	0	1	0	0	0	0	0	0	0	10186	493	17	3		3	MYOM2	8	2088500	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	34194	2088500	144275522	684	171439											
CSMD1	64478	broad.mit.edu	37	chr8	2830854	2830854	+	Intron	SNP	A	C	C													aacacatacggcaatccacaAttgtgttagacttgttttaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2830854	C	C	2830854	1	2	226	0	1	0	0	0	0	0	0	0	3978	116	4	5		5	CSMD1	8	2830854	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	742354	2830854	143533168	685	171440	710	2									
CSMD1	64478	broad.mit.edu	37	chr8	2830856	2830856	+	Intron	SNP	T	G	G													cacatacggcaatccacaatTgtgttagacttgttttaagc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2830856	G	G	2830856	1	3	226	0	1	0	0	0	0	0	0	0	3978	1827	63	5		5	CSMD1	8	2830856	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2	2830856	143533166	686	171441	710	2									
CSMD1	64478	broad.mit.edu	37	chr8	3046423	3046423	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actcacctgaattcccgagcCctccgtaactatgatcttcc	5	16	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3046423	T	T	3046423	3	4	226	1	0	0	0	0	1	0	0	0	3978	623	22	4	5329	4	CSMD1	8	3046423	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	215567	3046423	143317599	687	171442											
CSMD1	64478	broad.mit.edu	37	chr8	4645134	4645134	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attccaattgaatgggtttgCagaagaatagcaactggttc	10	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4645134	A	A	4645134	1	1	226	0	1	0	0	0	0	0	0	0	3978	725	25	3		3	CSMD1	8	4645134	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1598711	4645134	141718888	688	171443											
DEFB104A	140596	broad.mit.edu	37	chr8	7698427	7698427	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggaaagtggaggaggatGggggtccaggaaaacctcta	16	6	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7698427	T	T	7698427	1	4	226	0	1	0	0	0	0	0	0	0	4430	1363	47	2		2	DEFB104A	8	7698427	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3053293	7698427	138665595	689	171444											
PRSS55	203074	broad.mit.edu	37	chr8	10387130	10387130	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgagtattcaggcaagaagtGaacctttctgtggcggctcc	12	9	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10387130	T	T	10387130	4	4	226	1	0	0	0	0	0	1	0	0	12740	1291	45	3	274	3	PRSS55	8	10387130	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2688703	10387130	135976892	690	171445											
PRSS55	203074	broad.mit.edu	37	chr8	10396253	10396253	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caggcagccccagatcctggCtcctgctctgtcccctgtcc	9	19	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10396253	G	G	10396253	3	3	226	1	0	0	0	0	1	0	0	0	12740	797	28	4	1027	4	PRSS55	8	10396253	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	9123	10396253	135967769	691	171446											
RP1L1	94137	broad.mit.edu	37	chr8	10466457	10466457	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacagtcctagtgctcgtGgggtccgtgtgggtcttgcc	16	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10466457	A	A	10466457	2	1	226	1	0	0	0	0	0	0	0	1	13644	1335	47	4		4	RP1L1	8	10466457	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	70204	10466457	135897565	692	171447											
BLK	640	broad.mit.edu	37	chr8	11403708	11403708	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggttgagtcaggagcagcttGagggctggagaagagaaaac	17	5	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11403708	T	T	11403708	1	4	226	0	1	0	0	0	0	0	0	0	1450	1305	45	3		3	BLK	8	11403708	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	937251	11403708	134960314	693	171448											
MTMR7	9108	broad.mit.edu	37	chr8	17188770	17188770	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcatagcctttccctgcagCacgatttgccattgcattaa	6	13	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17188770	G	G	17188770	3	3	226	1	0	0	0	0	1	0	0	0	10042	710	25	4	1260	4	MTMR7	8	17188770	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	5785062	17188770	129175252	694	171449											
PCM1	5108	broad.mit.edu	37	chr8	17843687	17843687	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaaattgtaggtagacCtaatatatttgattttcagc	7	5	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17843687	G	G	17843687	1	3	226	0	1	0	0	0	0	0	0	0	11678	696	24	4		4	PCM1	8	17843687	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	654917	17843687	128520335	695	171450											
SLC18A1	6570	broad.mit.edu	37	chr8	20031788	20031788	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttccttaatttctccaTgtaaatataggatctgaggt	6	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20031788	G	G	20031788	1	3	226	0	1	0	0	0	0	0	0	0	14538	1479	51	5		5	SLC18A1	8	20031788	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2188101	20031788	126332234	696	171451											
LZTS1	11178	broad.mit.edu	37	chr8	20110354	20110354	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccctctcgtaggacctgAgcttggtctccagcaggtcc	10	15	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20110354	T	T	20110354	3	4	226	1	0	0	0	0	1	0	0	0	9226	304	11	5	710	5	LZTS1	8	20110354	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	78566	20110354	126253668	697	171452											
DOK2	9046	broad.mit.edu	37	chr8	21766921	21766921	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggctggacatgctggagGccagcagggtccctgtcagc	16	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21766921	T	T	21766921	2	4	226	1	0	0	0	0	0	0	0	1	4737	1190	42	3		3	DOK2	8	21766921	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	1656567	21766921	124597101	698	171453											
LGI3	203190	broad.mit.edu	37	chr8	22005941	22005941	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agccccgggagggcagggccTgcacctccgagaagcgggta	17	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22005941	A	A	22005941	3	1	226	1	0	0	0	0	1	0	0	0	8825	1580	55	5	271	5	LGI3	8	22005941	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	239020	22005941	124358081	699	171454											
NEFL	4747	broad.mit.edu	37	chr8	24813237	24813237	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggcggccagcttctcgtActgcgcgcggatgtccttga	13	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24813237	T	T	24813237	3	4	226	1	0	0	0	0	1	0	0	0	10410	391	14	5	855	5	NEFL	8	24813237	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	2807296	24813237	121550785	700	171455											
DOCK5	80005	broad.mit.edu	37	chr8	25101272	25101273	+	Missense_Mutation	DNP	GG	AT	AT													cacatcctggagatgtacgaGggtaagtctggctggccttc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	25101273	AT	AT	25101272	3	1	226	1	0	0	0	0	1	0	0	0	4730	1014	35	4	132	4	DOCK5	8	25101272	Missense_Mutation	DNP	GG	TCGA-91-6829-01A-21D-1855-08	288035	25101272	121262750	701	171456											
DOCK5	80005	broad.mit.edu	37	chr8	25209284	25209284	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcagcttataatggaacGgctgctgagaaggatcaacc	10	9	2	1	rs139516143	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25209284	T	T	25209284	3	4	226	1	0	0	0	0	1	0	0	0	4730	1116	39	1	2898	1	DOCK5	8	25209284	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	108012	25209284	121154738	702	171457											
BNIP3L	665	broad.mit.edu	37	chr8	26238284	26238284	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcactggcctgtttttcatCttcatcttttccaagaaaga	6	10	5	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26238284	G	G	26238284	1	3	226	0	1	0	0	0	0	0	0	0	1485	928	32	4		4	BNIP3L	8	26238284	5'Flank	SNP	C	TCGA-91-6829-01A-21D-1855-08	1029000	26238284	120125738	703	171458											
C8orf80	389643	broad.mit.edu	37	chr8	27898609	27898609	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcggtaagaagtcctggCggtcctgaccccttcttgca	12	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27898609	T	T	27898609	3	4	226	1	0	0	0	0	1	0	0	0	2465	768	27	4	848	4	C8orf80	8	27898609	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1660325	27898609	118465413	704	171459											
ZNF395	55893	broad.mit.edu	37	chr8	28304710	28304710	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgattgtgcttttcttagcCtagttctgtcctgcaattta	7	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28304710	A	A	28304710	1	1	226	1	0	0	0	0	0	0	0	0	18008	681	24	2		2	ZNF395	8	28304710	Translation_Start_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	406101	28304710	118059312	705	171460											
DDHD2	23259	broad.mit.edu	37	chr8	38095615	38095615	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttctgtttaagcttatggtGcattaccagccagttgcagg	11	8	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38095615	C	C	38095615	2	2	226	1	0	0	0	0	0	0	0	1	4360	1306	46	4		4	DDHD2	8	38095615	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	9790905	38095615	108268407	706	171461											
ADAM18	8749	broad.mit.edu	37	chr8	39442290	39442290	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcattctgggaccctcccCctctcccttctgggatccca	7	18	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39442290	T	T	39442290	1	4	226	0	1	0	0	0	0	0	0	0	239	638	22	4		4	ADAM18	8	39442290	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1346675	39442290	106921732	707	171462											
ADAM18	8749	broad.mit.edu	37	chr8	39550216	39550216	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggggtaagtcacttttgtaTctgaattgcatgttattctt	9	5	3	1	rs76377389		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39550216	A	A	39550216	1	1	226	0	1	0	0	0	0	0	0	0	239	1450	50	5		5	ADAM18	8	39550216	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	107926	39550216	106813806	708	171463											
ANK1	286	broad.mit.edu	37	chr8	41563755	41563755	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagatggaggggagtgagtCcgctctgcaaagaaaaagac	14	8	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41563755	A	A	41563755	3	1	226	1	0	0	0	0	1	0	0	0	620	855	30	3	4096	3	ANK1	8	41563755	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2013539	41563755	104800267	709	171464											
PRKDC	5591	broad.mit.edu	37	chr8	48731854	48731854	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggaaattcgatggagtttCcaacccatacattaagaaac	8	8	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48731854	A	A	48731854	1	1	226	0	1	0	0	0	0	0	0	0	12627	870	30	3		3	PRKDC	8	48731854	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	7168099	48731854	97632168	710	171465											
PRKDC	5591	broad.mit.edu	37	chr8	48772259	48772259	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttgagaaatcaaattgactCatttcctcactcagggtact	7	9	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48772259	G	G	48772259	3	3	226	1	0	0	0	0	1	0	0	0	12627	826	29	4	6430	4	PRKDC	8	48772259	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	40405	48772259	97591763	711	171466											
SNAI2	6591	broad.mit.edu	37	chr8	49831348	49831348	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgcattctgttcgagtAaacattgattgcgtcactca	8	8	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49831348	G	G	49831348	1	3	226	0	1	0	0	0	0	0	0	0	14941	377	13	5		5	SNAI2	8	49831348	3'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	1059089	49831348	96532674	712	171467											
PXDNL	137902	broad.mit.edu	37	chr8	52252054	52252054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacaaaaaaaaagcaatAcaactccctgtataggtttt	4	7	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52252054	T	T	52252054	1	4	226	0	1	0	0	0	0	0	0	0	12956	406	14	5		5	PXDNL	8	52252054	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2420706	52252054	94111968	713	171468											
PXDNL	137902	broad.mit.edu	37	chr8	52387734	52387734	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagaagtacaactgttaaAagggactattaatttctatg	8	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52387734	C	C	52387734	1	2	226	0	1	0	0	0	0	0	0	0	12956	29	1	5		5	PXDNL	8	52387734	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	135680	52387734	93976288	714	171469											
RP1	6101	broad.mit.edu	37	chr8	55533900	55533900	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcccgtcggcgcccgcGgccctggctcagcagccggg	15	18	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55533900	T	T	55533900	3	4	226	1	0	0	0	0	1	0	0	0	13643	1116	39	1	376	1	RP1	8	55533900	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3146166	55533900	90830122	715	171470											
RP1	6101	broad.mit.edu	37	chr8	55609151	55609151	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcctggcagcagaaacgtgAcaaagtacgtctcagatgac	10	11	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55609151	T	T	55609151	1	4	226	0	1	0	0	0	0	0	0	0	13643	290	10	5		5	RP1	8	55609151	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	75251	55609151	90754871	716	171471											
TGS1	96764	broad.mit.edu	37	chr8	56723335	56723335	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtctcctcctctttatAaagagttcttatacagaaga	5	8	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56723335	G	G	56723335	1	3	226	0	1	0	0	0	0	0	0	0	15960	377	13	5		5	TGS1	8	56723335	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1114184	56723335	89640687	717	171472											
PENK	5179	broad.mit.edu	37	chr8	57353894	57353894	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acttctttggagtaactttcGccttcttcgtcggagggcag	11	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57353894	T	T	57353894	2	4	226	1	0	0	0	0	0	0	0	1	11821	1074	38	3		3	PENK	8	57353894	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	630559	57353894	89010128	718	171473											
CHD7	55636	broad.mit.edu	37	chr8	61653994	61653994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgtgttggaagaagatGgcagatccaggaatgatgag	16	5	0	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61653994	T	T	61653994	3	4	226	1	0	0	0	0	1	0	0	0	3361	1348	47	2	5	2	CHD7	8	61653994	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4300100	61653994	84710028	719	171474											
CLVS1	157807	broad.mit.edu	37	chr8	62212449	62212449	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttggaacggagatttggcCaagatgacccatttacaggc	11	9	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62212449	A	A	62212449	2	1	226	1	0	0	0	0	0	0	0	1	3603	581	21	2		2	CLVS1	8	62212449	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	558455	62212449	84151573	720	171475											
CSPP1	79848	broad.mit.edu	37	chr8	68018196	68018196	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agatacctgtagtccttttgCagggatgctctttggtaggc	12	8	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68018196	G	G	68018196	3	3	226	1	0	0	0	0	1	0	0	0	3996	710	25	4	1249	4	CSPP1	8	68018196	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	5805747	68018196	78345826	721	171476											
XKR9	389668	broad.mit.edu	37	chr8	71646054	71646054	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cggccatcatggtctcttgcTgtgctatttcttggtcaact	9	11	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71646054	A	A	71646054	3	1	226	1	0	0	0	0	1	0	0	0	17565	1580	55	5	527	5	XKR9	8	71646054	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	3627858	71646054	74717968	722	171477											
MSC	9242	broad.mit.edu	37	chr8	72756411	72756411	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcactcaccgagcccgtggaCatcccgttgtcccccttgcc	8	19	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72756411	T	T	72756411	3	4	226	1	0	0	0	0	1	0	0	0	9962	478	17	4	625	4	MSC	8	72756411	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1110357	72756411	73607611	723	171478											
ZFHX4	79776	broad.mit.edu	37	chr8	77616593	77616593	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatgtgccacttcttttccCagtttacagaaatacatgga	7	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77616593	A	A	77616593	2	1	226	1	0	0	0	0	0	0	0	1	17761	581	21	2		2	ZFHX4	8	77616593	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	4860182	77616593	68747429	724	171479											
ZFHX4	79776	broad.mit.edu	37	chr8	77766681	77766681	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaactctggaactctgGcaggaacaccagcacatgca	8	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77766681	T	T	77766681	3	4	226	1	0	0	0	0	1	0	0	0	17761	1212	42	3	7558	3	ZFHX4	8	77766681	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	150088	77766681	68597341	725	171480											
HEY1	23462	broad.mit.edu	37	chr8	80679576	80679576	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aactgaaatcgccgttaaacGaggagaggtgatctgagagg	14	6	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80679576	T	T	80679576	1	4	226	0	1	0	0	0	0	0	0	0	7145	1073	37	3		3	HEY1	8	80679576	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2912895	80679576	65684446	726	171481											
RALYL	138046	broad.mit.edu	37	chr8	85799963	85799963	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgccgatggagaagagatGacagatgggatagaggagga	18	3	0	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85799963	T	T	85799963	3	4	226	1	0	0	0	0	1	0	0	0	13128	1290	45	3	879	3	RALYL	8	85799963	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	5120387	85799963	60564059	727	171482											
OSGIN2	734	broad.mit.edu	37	chr8	90926858	90926858	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacttttcgatacacttcttCatccagatgctgactttggg	7	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90926858	A	A	90926858	3	1	226	1	0	0	0	0	1	0	0	0	11384	826	29	3	426	3	OSGIN2	8	90926858	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	5126895	90926858	55437164	728	171483											
VPS13B	157680	broad.mit.edu	37	chr8	100587817	100587817	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttgtagtacaaagacttGtacaaatttaatgaaaattg	7	3	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100587817	T	T	100587817	1	4	226	0	1	0	0	0	0	0	0	0	17317	1392	48	3		3	VPS13B	8	100587817	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	9660959	100587817	45776205	729	171484											
PABPC1	26986	broad.mit.edu	37	chr8	101721762	101721762	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attacagggttgggaacagcTcgtacacttgccattctctg	10	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101721762	A	A	101721762	2	1	226	1	0	0	0	0	0	0	0	1	11457	1538	54	5		5	PABPC1	8	101721762	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	1133945	101721762	44642260	730	171485											
NCALD	83988	broad.mit.edu	37	chr8	102884009	102884009	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tttccttttcttaaagaaatCcagacaatttgtcacaagaa	4	8	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102884009	A	A	102884009	1	1	226	0	1	0	0	0	0	0	0	0	10296	870	30	3		3	NCALD	8	102884009	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1162247	102884009	43480013	731	171486											
LRP12	29967	broad.mit.edu	37	chr8	105503299	105503299	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcatacgactgagtgcacTtgtaagctggtgacgtgctg	13	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105503299	C	C	105503299	3	2	226	1	0	0	0	0	1	0	0	0	9041	1609	56	5	401	5	LRP12	8	105503299	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	2619290	105503299	40860723	732	171487											
ANGPT1	284	broad.mit.edu	37	chr8	108334269	108334269	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatgtttgacgagtaaccaaGccttgaaggttctctttctc	8	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108334269	C	C	108334269	2	2	226	1	0	0	0	0	0	0	0	1	610	958	34	4		4	ANGPT1	8	108334269	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	2830970	108334269	38029753	733	171488											
NUDCD1	84955	broad.mit.edu	37	chr8	110255340	110255340	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaataggatcattggtttcTaggcttgctacttgctgctt	9	7	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110255340	C	C	110255340	2	2	226	1	0	0	0	0	0	0	0	1	10817	1509	53	5		5	NUDCD1	8	110255340	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	1921071	110255340	36108682	734	171489											
NUDCD1	84955	broad.mit.edu	37	chr8	110255552	110255552	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagaatatgagacaaaCaaaagaaaaactatatatta	5	5	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110255552	G	G	110255552	1	3	226	0	1	0	0	0	0	0	0	0	10817	493	17	4		4	NUDCD1	8	110255552	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	212	110255552	36108470	735	171490											
SLC30A8	169026	broad.mit.edu	37	chr8	118147547	118147547	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acaacaacgacaacaacagcCgcagctcatcctggccgtca	7	16	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118147547	G	G	118147547	1	3	226	0	1	0	0	0	0	0	0	0	14675	667	23	4		4	SLC30A8	8	118147547	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	7891995	118147547	28216475	736	171491											
MTBP	27085	broad.mit.edu	37	chr8	121483118	121483118	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catactgattccacctcccaAccaactcagttcaagaaaat	3	14	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121483118	C	C	121483118	3	2	226	1	0	0	0	0	1	0	0	0	10006	43	2	5	1148	5	MTBP	8	121483118	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	3335571	121483118	24880904	737	171492											
ATAD2	29028	broad.mit.edu	37	chr8	124413331	124413331	+	RNA	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgagaaggaccacacCaccctcctcagtgaggtgat	10	13	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124413331	T	T	124413331	1	4	226	0	1	0	0	0	0	0	0	0	1075	609	21	4		4	ATAD2	8	124413331	RNA	SNP	C	TCGA-91-6829-01A-21D-1855-08	2930213	124413331	21950691	738	171493											
KLHL38	340359	broad.mit.edu	37	chr8	124664095	124664095	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cctccactgattgagtttcaGggagaagatgtagacattgt	11	7	1	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124664095	C	C	124664095	3	2	226	1	0	0	0	0	1	0	0	0	8461	991	35	4	685	4	KLHL38	8	124664095	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	250764	124664095	21699927	739	171494											
OC90	729330	broad.mit.edu	37	chr8	133036911	133036912	+	Missense_Mutation	DNP	CC	AA	AA													gctgctggctgcccagggcaCccgagtctgcttggggactt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	133036912	AA	AA	133036911	3	1	226	1	0	0	0	0	1	0	0	0	10909	494	18	3	186	3	OC90	8	133036911	Missense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	8372816	133036911	13327111	740	171495											
ZFAT	57623	broad.mit.edu	37	chr8	135602646	135602646	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gactttctcatttaaatctgTggtctgtaaaaaataaccat	5	7	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135602646	A	A	135602646	1	1	226	0	1	0	0	0	0	0	0	0	17758	1711	59	5		5	ZFAT	8	135602646	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2565735	135602646	10761376	741	171496											
FAM135B	51059	broad.mit.edu	37	chr8	139209824	139209824	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtggagacggagacccCggtaagcgtggaggagcaac	18	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139209824	T	T	139209824	3	4	226	1	0	0	0	0	1	0	0	0	5495	652	23	4	3514	4	FAM135B	8	139209824	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3607178	139209824	7154198	742	171497											
TRAPPC9	83696	broad.mit.edu	37	chr8	141370270	141370270	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagcaaacgcatctggacCgcagcccagcctctgtgcgt	12	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141370270	A	A	141370270	2	1	226	1	0	0	0	0	0	0	0	1	16589	639	23	1		1	TRAPPC9	8	141370270	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	2160446	141370270	4993752	743	171498											
CPSF1	29894	broad.mit.edu	37	chr8	145619449	145619449	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagggccctgcccacatacCcagaaaacccagctgggcat	9	17	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145619449	G	G	145619449	3	3	226	1	0	0	0	0	1	0	0	0	3856	637	22	4	544	4	CPSF1	8	145619449	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4249179	145619449	744573	744	171499											
VPS28	51160	broad.mit.edu	37	chr8	145650186	145650186	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttgatccgctccatgGccagcgggcagtccagctgt	11	16	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145650186	T	T	145650186	3	4	226	1	0	0	0	0	1	0	0	0	17326	1203	42	3	478	3	VPS28	8	145650186	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	30737	145650186	713836	745	171500											
PDCD1LG2	80380	broad.mit.edu	37	chr9	5570146	5570146	+	3'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccatgaaacttgccccttCactgatctggactcacctct	7	15	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5570146	A	A	5570146	1	1	226	0	1	0	0	0	0	0	0	0	11712	841	29	3		3	PDCD1LG2	9	5570146	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08		5570146	135643285	746	171501											
PTPRD	5789	broad.mit.edu	37	chr9	9090952	9090952	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagggctgcggccacgtgCagcctattcgctgcactaac	11	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9090952	T	T	9090952	1	4	226	0	1	0	0	0	0	0	0	0	12907	725	25	4		4	PTPRD	9	9090952	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3520806	9090952	132122479	747	171502											
FREM1	158326	broad.mit.edu	37	chr9	14776091	14776091	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcccacggccccttggGccagtctcaaccccttgttc	10	18	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14776091	T	T	14776091	3	4	226	1	0	0	0	0	1	0	0	0	6104	1203	42	3	2038	3	FREM1	9	14776091	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	5685139	14776091	126437340	748	171503											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18906824	18906824	+	Frame_Shift_Del	DEL	C	-	-													ggagtgtgtgcatgcccgcaCcaacaaggcagtgcctgagc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18906824	-	-	18906824	7	5	226	1	0	1	0	1	0	0	0	0	274	507	18	0	5210	0	ADAMTSL1	9	18906824	Frame_Shift_Del	DEL	C	TCGA-91-6829-01A-21D-1855-08	4130733	18906824	122306607	749	171504											
ELAVL2	1993	broad.mit.edu	37	chr9	23705134	23705134	+	Intron	DEL	C	-	-													cccacctccctttagaaactCaaaaactgcctcggtaactt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	23705134	-	-	23705134	6	5	226	0	1	1	0	1	0	0	0	0	5092	841	29	0		0	ELAVL2	9	23705134	Intron	DEL	C	TCGA-91-6829-01A-21D-1855-08	4798310	23705134	117508297	750	171505											
PLAA	9373	broad.mit.edu	37	chr9	26928119	26928119	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagtcctctcacatcTtccagccttccacagtttaa	4	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26928119	C	C	26928119	3	2	226	1	0	0	0	0	1	0	0	0	12106	1617	56	5	1887	5	PLAA	9	26928119	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	3222985	26928119	114285312	751	171506											
AQP7	364	broad.mit.edu	37	chr9	33387171	33387171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagagctcagttctagctcCtcacccccatgccctgggcc	8	18	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33387171	A	A	33387171	1	1	226	0	1	0	0	0	0	0	0	0	833	696	24	2		2	AQP7	9	33387171	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	6459052	33387171	107826260	752	171507											
KIAA1045	23349	broad.mit.edu	37	chr9	34972183	34972183	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggacctcctggttcttgtCgtccagaaagaaaacctcaa	8	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34972183	A	A	34972183	1	1	226	0	1	0	0	0	0	0	0	0	8277	899	31	3		3	KIAA1045	9	34972183	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1585012	34972183	106241248	753	171508											
UNC13B	10497	broad.mit.edu	37	chr9	35310542	35310542	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaagtgaactagaccagtaTcacgaacaagatgacgacca	8	10	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35310542	C	C	35310542	2	2	226	1	0	0	0	0	0	0	0	1	17111	1442	50	5		5	UNC13B	9	35310542	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	338359	35310542	105902889	754	171509											
FRMPD1	22844	broad.mit.edu	37	chr9	37745562	37745562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatcccaccacatccccCtagagaccctcaaggacaga	7	17	1	3	rs62640016	byFrequency;by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37745562	A	A	37745562	3	1	226	1	0	0	0	0	1	0	0	0	6117	681	24	2	3591	2	FRMPD1	9	37745562	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2435020	37745562	103467869	755	171510											
CNTNAP3	79937	broad.mit.edu	37	chr9	39086814	39086814	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcatcaggattttgatGtctatctagcttgtacctaa	7	7	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39086814	A	A	39086814	3	1	226	1	0	0	0	0	1	0	0	0	3680	1377	48	4	633	4	CNTNAP3	9	39086814	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1341252	39086814	102126617	756	171511											
ZNF658	26149	broad.mit.edu	37	chr9	40774115	40774115	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggattttctgcatttcCcatgttcatcagaaaggtag	8	7	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40774115	G	G	40774115	3	3	226	1	0	0	0	0	1	0	0	0	18196	623	22	4	2023	4	ZNF658	9	40774115	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1687301	40774115	100439316	757	171512											
C9orf85	138241	broad.mit.edu	37	chr9	74587548	74587548	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggtaaaagtcttttcaatCtacatggttaaataatgata	7	4	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74587548	G	G	74587548	1	3	226	0	1	0	0	0	0	0	0	0	2527	928	32	4		4	C9orf85	9	74587548	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	33813433	74587548	66625883	758	171513											
TMC1	117531	broad.mit.edu	37	chr9	75315568	75315568	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagttctcaagtatggtgCcactttttataagtagaaac	8	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75315568	A	A	75315568	1	1	226	0	1	0	0	0	0	0	0	0	16107	754	26	3		3	TMC1	9	75315568	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	728020	75315568	65897863	759	171514											
PCSK5	5125	broad.mit.edu	37	chr9	78547266	78547266	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacattaatgtcttttttttGttctttccttcccacccttc	2	13	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78547266	A	A	78547266	1	1	226	0	1	0	0	0	0	0	0	0	11697	1392	48	4		4	PCSK5	9	78547266	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3231698	78547266	62666165	760	171515											
PRUNE2	158471	broad.mit.edu	37	chr9	79328486	79328486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggggctcacctgactgCacagctccatgttttctgag	12	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79328486	A	A	79328486	3	1	226	1	0	0	0	0	1	0	0	0	12747	710	25	3	8410	3	PRUNE2	9	79328486	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	781220	79328486	61884945	761	171516											
TLE4	7091	broad.mit.edu	37	chr9	82340023	82340023	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacattgtcactggctctggGgataagaaggccacagttta	11	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82340023	T	T	82340023	2	4	226	1	0	0	0	0	0	0	0	1	16064	1219	43	2		2	TLE4	9	82340023	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	3011537	82340023	58873408	762	171517											
NTRK2	4915	broad.mit.edu	37	chr9	87285692	87285692	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggataaggtggcatggacCcgccatggcgcggctctggg	17	11	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87285692	A	A	87285692	3	1	226	1	0	0	0	0	1	0	0	0	10802	623	22	2	31	2	NTRK2	9	87285692	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4945669	87285692	53927739	763	171518											
CENPP	401541	broad.mit.edu	37	chr9	95142109	95142109	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atttttttgtggagtggtttGaatatcgtaagcgcacgttt	11	4	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95142109	C	C	95142109	3	2	226	1	0	0	0	0	1	0	0	0	3270	1291	45	4	550	4	CENPP	9	95142109	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	7856417	95142109	46071322	764	171519											
ECM2	1842	broad.mit.edu	37	chr9	95258804	95258804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtcacacatggtcccaGtaataatctgcctttaggag	9	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95258804	T	T	95258804	1	4	226	0	1	0	0	0	0	0	0	0	4938	1044	36	3		3	ECM2	9	95258804	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	116695	95258804	45954627	765	171520											
GRIN3A	116443	broad.mit.edu	37	chr9	104335671	104335671	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccttggagggagggggatgtCctggtggatccggatgccca	18	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104335671	T	T	104335671	3	4	226	1	0	0	0	0	1	0	0	0	6849	855	30	4	218	4	GRIN3A	9	104335671	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	9076867	104335671	36877760	766	171521											
GRIN3A	116443	broad.mit.edu	37	chr9	104499662	104499662	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatttcgccctggctctgGgggaaggcgagcagcgccga	15	12	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104499662	T	T	104499662	2	4	226	1	0	0	0	0	0	0	0	1	6849	1219	43	2		2	GRIN3A	9	104499662	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	163991	104499662	36713769	767	171522											
SVEP1	79987	broad.mit.edu	37	chr9	113265405	113265405	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtctgtacccttcatcacAggcaaccaaacatgttgtct	6	12	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113265405	T	T	113265405	3	4	226	1	0	0	0	0	1	0	0	0	15538	188	7	5	9491	5	SVEP1	9	113265405	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	8765743	113265405	27948026	768	171523											
FKBP15	23307	broad.mit.edu	37	chr9	116034588	116034588	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaacctgtggtcccagcaCgcgggaggctgaggcagagg	17	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116034588	T	T	116034588	1	4	226	0	1	0	0	0	0	0	0	0	5962	551	19	4		4	FKBP15	9	116034588	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2769183	116034588	25178843	769	171524											
PAPPA	5069	broad.mit.edu	37	chr9	118950340	118950340	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgacggcggggattgccgCcacctgcgccaccctgcctt	12	18	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118950340	A	A	118950340	2	1	226	1	0	0	0	0	0	0	0	1	11526	726	26	3		3	PAPPA	9	118950340	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	2915752	118950340	22263091	770	171525											
ASTN2	23245	broad.mit.edu	37	chr9	119858333	119858333	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acactattacctttgctgcgGcggcgactgcggtactgctc	11	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119858333	T	T	119858333	2	4	226	1	0	0	0	0	0	0	0	1	1069	1190	42	3		3	ASTN2	9	119858333	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	907993	119858333	21355098	771	171526											
ASTN2	23245	broad.mit.edu	37	chr9	120053691	120053691	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggtggcttgggccagctGcccggagctgctcatggaga	18	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120053691	T	T	120053691	3	4	226	1	0	0	0	0	1	0	0	0	1069	1328	46	3	3638	3	ASTN2	9	120053691	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	195358	120053691	21159740	772	171527											
TLR4	7099	broad.mit.edu	37	chr9	120475277	120475277	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccattgaagaattccgattaGcatacttagactactacctc	5	11	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120475277	C	C	120475277	3	2	226	1	0	0	0	0	1	0	0	0	16076	971	34	4	881	4	TLR4	9	120475277	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	421586	120475277	20738154	773	171528											
OR1L1	26737	broad.mit.edu	37	chr9	125424827	125424827	+	Frame_Shift_Del	DEL	C	-	-													aatagcaacaattatctacaCcgtactgactcctatgctaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	125424827	-	-	125424827	7	5	226	1	0	1	0	1	0	0	0	0	11057	507	18	0	835	0	OR1L1	9	125424827	Frame_Shift_Del	DEL	C	TCGA-91-6829-01A-21D-1855-08	4949550	125424827	15788604	774	171529											
LHX2	9355	broad.mit.edu	37	chr9	126777305	126777305	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttgttcgtcttgaggagGggattgccccccgcagcagc	16	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126777305	T	T	126777305	1	4	226	0	1	0	0	0	0	0	0	0	8843	1247	43	2		2	LHX2	9	126777305	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1352478	126777305	14436126	775	171530											
C9orf119	375757	broad.mit.edu	37	chr9	131038432	131038432	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggcgtggctatgcagcGgcgtggccagagggacctgt	20	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131038432	T	T	131038432	3	4	226	1	0	0	0	0	1	0	0	0	2478	1116	39	1	10	1	C9orf119	9	131038432	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4261127	131038432	10174999	776	171531											
PKN3	29941	broad.mit.edu	37	chr9	131467832	131467832	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcccagctggtgagtgagGagctgagaccccctcaggac	15	12	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131467832	T	T	131467832	1	4	226	0	1	0	0	0	0	0	0	0	12076	1189	41	3		3	PKN3	9	131467832	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	429400	131467832	9745599	777	171532											
GPR107	57720	broad.mit.edu	37	chr9	132889670	132889670	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgagtgattctgttttcTgtttcctagttcatttgtga	8	6	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132889670	C	C	132889670	1	2	226	0	1	0	0	0	0	0	0	0	6688	1595	55	5		5	GPR107	9	132889670	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1421838	132889670	8323761	778	171533											
C9orf98	158067	broad.mit.edu	37	chr9	135690074	135690074	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atgagctcgccaaacgtggtCctatctgccacagcctcttt	8	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135690074	A	A	135690074	3	1	226	1	0	0	0	0	1	0	0	0	2535	854	30	3	525	3	C9orf98	9	135690074	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2800404	135690074	5523357	779	171534											
C9orf98	158067	broad.mit.edu	37	chr9	135704074	135704075	+	Missense_Mutation	DNP	CC	AA	AA													cagggtctggatcctcagagCctgctcacgcgtctcaggga							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	135704075	AA	AA	135704074	3	1	226	1	0	0	0	0	1	0	0	0	2535	739	26	3	1029	3	C9orf98	9	135704074	Missense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	14000	135704074	5509357	780	171535											
SARDH	1757	broad.mit.edu	37	chr9	136577868	136577868	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagggctgcggtctgcccCccagggtcccccacccatgt	12	19	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136577868	A	A	136577868	1	1	226	0	1	0	0	0	0	0	0	0	13953	638	22	2		2	SARDH	9	136577868	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	873794	136577868	4635563	781	171536											
KCNT1	57582	broad.mit.edu	37	chr9	138650394	138650394	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcaccccaggacgttgGgagggcccgagaggcaagca	17	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138650394	T	T	138650394	1	4	226	0	1	0	0	0	0	0	0	0	8161	1247	43	2		2	KCNT1	9	138650394	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2072526	138650394	2563037	782	171537											
KCNT1	57582	broad.mit.edu	37	chr9	138670486	138670486	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcccggggtcctgtgggtGgggagtgggccgcatcctca	17	11	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138670486	T	T	138670486	1	4	226	0	1	0	0	0	0	0	0	0	8161	1363	47	2		2	KCNT1	9	138670486	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	20092	138670486	2542945	783	171538											
KCNT1	57582	broad.mit.edu	37	chr9	138671082	138671082	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aagacagtgggccctgccctGagacccccccacagccatgg	11	17	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	138671082	C	C	138671082	1	2	226	0	1	0	0	0	0	0	0	0	8161	1305	45	4		4	KCNT1	9	138671082	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	596	138671082	2542349	784	171539											
LCN6	158062	broad.mit.edu	37	chr9	139639197	139639197	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtctccgtcagacctgGgggcaccagggcagtgcagg	17	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139639197	T	T	139639197	1	4	226	0	1	0	0	0	0	0	0	0	8757	1247	43	2		2	LCN6	9	139639197	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	968115	139639197	1574234	785	171540											
PHPT1	29085	broad.mit.edu	37	chr9	139745155	139745155	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggatgcccagagccggGtatcgggttgaagggtccag	18	9	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139745155	T	T	139745155	1	4	226	0	1	0	0	0	0	0	0	0	11955	1276	44	3		3	PHPT1	9	139745155	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	105958	139745155	1468276	786	171541											
FAM166A	401565	broad.mit.edu	37	chr9	140139769	140139769	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggctgcctggtgctgcCtgggggcctcgcaaacagga	15	14	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140139769	T	T	140139769	3	4	226	1	0	0	0	0	1	0	0	0	5526	681	24	4	461	4	FAM166A	9	140139769	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	394614	140139769	1073662	787	171542											
COBRA1	25920	broad.mit.edu	37	chr9	140160977	140160977	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggtgattgtggaggccCctttggtcccaaagcttcct	12	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140160977	T	T	140160977	1	4	226	0	1	0	0	0	0	0	0	0	3687	638	22	4		4	COBRA1	9	140160977	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	21208	140160977	1052454	788	171543											
EXD3	54932	broad.mit.edu	37	chr9	140218082	140218083	+	Intron	DNP	CC	AA	AA													gccgacaccccaccccagacCcaccactgtctagggtgggg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	140218083	AA	AA	140218082	1	1	226	0	1	0	0	0	0	0	0	0	5341	638	22	2		2	EXD3	9	140218082	Intron	DNP	CC	TCGA-91-6829-01A-21D-1855-08	57105	140218082	995349	789	171544											
TUBB8	347688	broad.mit.edu	37	chr10	94702	94702	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgagcgaggggagggcCgcgttcccaggagggcggtg	22	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94702	A	A	94702	1	1	226	0	1	0	0	0	0	0	0	0	16887	667	23	1		1	TUBB8	10	94702	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08		94702	135440045	790	171545											
LARP4B	23185	broad.mit.edu	37	chr10	931760	931760	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacagtatgattatttaaaTaaaattaaaatcctcaagtt	4	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	931760	C	C	931760	1	2	226	0	1	0	0	0	0	0	0	0	8703	1421	49	5		5	LARP4B	10	931760	5'Flank	SNP	T	TCGA-91-6829-01A-21D-1855-08	837058	931760	134602987	791	171546											
SFMBT2	57713	broad.mit.edu	37	chr10	7244452	7244452	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcacgtactgtttctctgGttgcacgactgcaatctttc	8	11	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7244452	C	C	7244452	3	2	226	1	0	0	0	0	1	0	0	0	14271	1261	44	4	1243	4	SFMBT2	10	7244452	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	6312692	7244452	128290295	792	171547											
ITIH5	80760	broad.mit.edu	37	chr10	7658105	7658105	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacggtagtacctagagcgGggagcaaaaatacctgaagt	12	7	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7658105	T	T	7658105	1	4	226	0	1	0	0	0	0	0	0	0	7977	1247	43	2		2	ITIH5	10	7658105	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	413653	7658105	127876642	793	171548											
ITIH5	80760	broad.mit.edu	37	chr10	7683889	7683889	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaccagcgtgtcacctaCatagtgaagttggtgatgaa	11	9	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7683889	T	T	7683889	5	4	226	1	0	0	0	0	0	0	1	0	7977	492	17	4	2713	4	ITIH5	10	7683889	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	25784	7683889	127850858	794	171549											
PRPF18	8559	broad.mit.edu	37	chr10	13628924	13628924	+	5'Flank	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cccgggccactctcttccctCatctctctcatcccagcttc	4	21	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13628924	T	T	13628924	1	4	226	0	1	0	0	0	0	0	0	0	12669	841	29	4		4	PRPF18	10	13628924	5'Flank	SNP	C	TCGA-91-6829-01A-21D-1855-08	5945035	13628924	121905823	795	171550											
NMT2	9397	broad.mit.edu	37	chr10	15213359	15213359	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctaagtagtatcttgccaGtgtattttaaaaggcctttg	10	6	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15213359	T	T	15213359	1	4	226	0	1	0	0	0	0	0	0	0	10599	1044	36	3		3	NMT2	10	15213359	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	1584435	15213359	120321388	796	171551											
FAM171A1	221061	broad.mit.edu	37	chr10	15258120	15258120	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acaacgggacctagaaggtcAgaaaatggcatttagagttt	11	6	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15258120	C	C	15258120	1	2	226	0	1	0	0	0	0	0	0	0	5535	203	7	5		5	FAM171A1	10	15258120	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	44761	15258120	120276627	797	171552											
ITGA8	8516	broad.mit.edu	37	chr10	15725835	15725835	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attccacgcttttgacttgcTgtcacatcaagacacctgta	6	12	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15725835	A	A	15725835	1	1	226	0	1	0	0	0	0	0	0	0	7952	1595	55	5		5	ITGA8	10	15725835	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	467715	15725835	119808912	798	171553											
FAM188A	80013	broad.mit.edu	37	chr10	15880186	15880186	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacttaaagtggcaatgtGtccacagagtaagtatttta	9	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15880186	T	T	15880186	1	4	226	0	1	0	0	0	0	0	0	0	5560	1392	48	3		3	FAM188A	10	15880186	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	154351	15880186	119654561	799	171554											
CUBN	8029	broad.mit.edu	37	chr10	16893485	16893485	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcagaccaaacagaacCgaccttacattgtacatgga	7	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16893485	A	A	16893485	1	1	226	0	1	0	0	0	0	0	0	0	4084	667	23	1		1	CUBN	10	16893485	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1013299	16893485	118641262	800	171555											
CUBN	8029	broad.mit.edu	37	chr10	16980992	16980992	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcataatagcagttttgtatTtcttctatgtccatctccaa	4	9	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16980992	C	C	16980992	2	2	226	1	0	0	0	0	0	0	0	1	4084	1838	64	5		5	CUBN	10	16980992	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	87507	16980992	118553755	801	171556											
CUBN	8029	broad.mit.edu	37	chr10	17089683	17089683	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagtaatatgtatttcatTaatttgtgcctatacttgat	5	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17089683	A	A	17089683	1	1	226	0	1	0	0	0	0	0	0	0	4084	1769	61	5		5	CUBN	10	17089683	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	108691	17089683	118445064	802	171557											
CUBN	8029	broad.mit.edu	37	chr10	17171549	17171549	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcaacataattttcctcaAgaaaaattgcacctttgttt	3	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17171549	T	T	17171549	1	4	226	0	1	0	0	0	0	0	0	0	4084	87	3	5		5	CUBN	10	17171549	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	81866	17171549	118363198	803	171558											
SLC39A12	221074	broad.mit.edu	37	chr10	18270268	18270268	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctctgctaggcagctggtgGagatatttctacagaagggc	13	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18270268	T	T	18270268	4	4	226	1	0	0	0	0	0	1	0	0	14729	1175	41	3	970	3	SLC39A12	10	18270268	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1098719	18270268	117264479	804	171559											
CACNB2	783	broad.mit.edu	37	chr10	18629792	18629792	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgccttttagctagtcctGaattcttgctcctgtgaaga	9	10	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18629792	A	A	18629792	1	1	226	0	1	0	0	0	0	0	0	0	2579	1305	45	4		4	CACNB2	10	18629792	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	359524	18629792	116904955	805	171560											
NEBL	10529	broad.mit.edu	37	chr10	21178712	21178712	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctctttaatgcacagacTttcatctatataataagaaa	3	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21178712	G	G	21178712	1	3	226	0	1	0	0	0	0	0	0	0	10398	1624	56	5		5	NEBL	10	21178712	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2548920	21178712	114356035	806	171561											
GPR158	57512	broad.mit.edu	37	chr10	25886724	25886724	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgaaaaaactctatgcCcaactggaaatatataaaag	7	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25886724	A	A	25886724	2	1	226	1	0	0	0	0	0	0	0	1	6728	610	22	2		2	GPR158	10	25886724	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	4708012	25886724	109648023	807	171562											
GAD2	2572	broad.mit.edu	37	chr10	26505872	26505872	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcggtggtctggggtttgcGgaactacggagaagacgaag	18	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26505872	A	A	26505872	1	1	226	0	1	0	0	0	0	0	0	0	6240	1131	39	4		4	GAD2	10	26505872	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	619148	26505872	109028875	808	171563											
GAD2	2572	broad.mit.edu	37	chr10	26508011	26508011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaaggcccactttggCgtttctgcaagatgttatga	12	7	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26508011	A	A	26508011	3	1	226	1	0	0	0	0	1	0	0	0	6240	768	27	3	340	3	GAD2	10	26508011	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2139	26508011	109026736	809	171564											
GAD2	2572	broad.mit.edu	37	chr10	26575391	26575391	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgcggacgccacgttgatGtttttaaactatggctgatg	12	7	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26575391	C	C	26575391	3	2	226	1	0	0	0	0	1	0	0	0	6240	1377	48	4	1404	4	GAD2	10	26575391	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	67380	26575391	108959356	810	171565											
ANKRD26	22852	broad.mit.edu	37	chr10	27306605	27306605	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattcttctgtagtttttcAcatttcttttgtactgtttt	4	6	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27306605	G	G	27306605	2	3	226	1	0	0	0	0	0	0	0	1	654	157	6	5		5	ANKRD26	10	27306605	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	731214	27306605	108228142	811	171566											
LYZL2	119180	broad.mit.edu	37	chr10	30901092	30901092	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttctgagatcaaaggaCgctgtcattttgcctagttc	9	9	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30901092	A	A	30901092	1	1	226	0	1	0	0	0	0	0	0	0	9220	551	19	3		3	LYZL2	10	30901092	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3594487	30901092	104633655	812	171567											
ZNF438	220929	broad.mit.edu	37	chr10	31166056	31166056	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagagcatgttaatgcataCtaaatatagaaattctaagc	7	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31166056	A	A	31166056	1	1	226	0	1	0	0	0	0	0	0	0	18037	580	20	3		3	ZNF438	10	31166056	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	264964	31166056	104368691	813	171568											
ZNF33A	7581	broad.mit.edu	37	chr10	38345105	38345105	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggacttattttccatgagAgaaagcacacgggggagaaa	12	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38345105	G	G	38345105	3	3	226	1	0	0	0	0	1	0	0	0	17980	296	11	5	2067	5	ZNF33A	10	38345105	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	7179049	38345105	97189642	814	171569											
HNRNPF	3185	broad.mit.edu	37	chr10	43882738	43882738	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcacggacatgaacttcaGagggggatctgagtatgacc	13	9	2	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43882738	T	T	43882738	3	4	226	1	0	0	0	0	1	0	0	0	7332	933	33	3	656	3	HNRNPF	10	43882738	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	5537633	43882738	91652009	815	171570											
MARCH8	220972	broad.mit.edu	37	chr10	45959583	45959583	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aactcgccaactgtttagacCaaaggcagattgattaagca	8	9	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45959583	G	G	45959583	1	3	226	0	1	0	0	0	0	0	0	0	9399	609	21	4		4	MARCH8	10	45959583	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2076845	45959583	89575164	816	171571											
RBP3	5949	broad.mit.edu	37	chr10	48389931	48389931	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagagtgaggatggccaggGctttctccagggcctgctcg	16	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48389931	T	T	48389931	3	4	226	1	0	0	0	0	1	0	0	0	13265	1203	42	3	2812	3	RBP3	10	48389931	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2430348	48389931	87144816	817	171572											
ARHGAP22	58504	broad.mit.edu	37	chr10	49790933	49790933	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctcccttctcctgggCatggtcttccctcttgtgga	8	16	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49790933	A	A	49790933	1	1	226	0	1	0	0	0	0	0	0	0	874	725	25	3		3	ARHGAP22	10	49790933	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1401002	49790933	85743814	818	171573											
OGDHL	55753	broad.mit.edu	37	chr10	50959877	50959877	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaggtggtgccaacctcaTggagcgcactagccgggcca	13	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50959877	C	C	50959877	3	2	226	1	0	0	0	0	1	0	0	0	10935	1464	51	5	2359	5	OGDHL	10	50959877	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1168944	50959877	84574870	819	171574											
PARG	8505	broad.mit.edu	37	chr10	51077590	51077590	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccggtttccttgatgaacgtCcctcaaacaatctaagagat	7	11	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	51077590	G	G	51077590	3	3	226	1	0	0	0	0	1	0	0	0	11542	855	30	4	966	4	PARG	10	51077590	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	117713	51077590	84457157	820	171575											
PARG	8505	broad.mit.edu	37	chr10	51532096	51532096	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagaattagccagctgggCtcagtttagattattccaat	8	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51532096	A	A	51532096	1	1	226	0	1	0	0	0	0	0	0	0	11542	812	28	3		3	PARG	10	51532096	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	454506	51532096	84002651	821	171576											
FAM21A	387680	broad.mit.edu	37	chr10	51864005	51864005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atactagcaaaaggtggtagGgaagcagtcaggccacctga	13	8	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51864005	T	T	51864005	1	4	226	0	1	0	0	0	0	0	0	0	5587	1247	43	2		2	FAM21A	10	51864005	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	331909	51864005	83670742	822	171577											
PCDH15	65217	broad.mit.edu	37	chr10	55582281	55582281	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagatgtttggtggatgGgcaaaattttcaaaaatatt	12	2	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55582281	T	T	55582281	2	4	226	1	0	0	0	0	0	0	0	1	11605	1219	43	2		2	PCDH15	10	55582281	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	3718276	55582281	79952466	823	171578											
PCDH15	65217	broad.mit.edu	37	chr10	55944963	55944963	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggtagcgagtaataccAgtctgtgtgacggtgaagac	15	6	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55944963	T	T	55944963	2	4	226	1	0	0	0	0	0	0	0	1	11605	175	7	5		5	PCDH15	10	55944963	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	362682	55944963	79589784	824	171579											
PCDH15	65217	broad.mit.edu	37	chr10	56106133	56106133	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtatttacataccggatcatCtggattatactgaataacat	6	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56106133	A	A	56106133	3	1	226	1	0	0	0	0	1	0	0	0	11605	913	32	3	7037	3	PCDH15	10	56106133	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	161170	56106133	79428614	825	171580											
BICC1	80114	broad.mit.edu	37	chr10	60548170	60548170	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agcaggagtagaatctgcccGagttagaattcgggtaacta	12	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60548170	A	A	60548170	3	1	226	1	0	0	0	0	1	0	0	0	1433	1058	37	4	609	4	BICC1	10	60548170	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4442037	60548170	74986577	826	171581											
TMEM26	219623	broad.mit.edu	37	chr10	63170590	63170590	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacgagtcattaacaatGgggactgtgctagtaataat	13	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63170590	T	T	63170590	1	4	226	0	1	0	0	0	0	0	0	0	16274	1363	47	2		2	TMEM26	10	63170590	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2622420	63170590	72364157	827	171582											
PBLD	64081	broad.mit.edu	37	chr10	70056647	70056647	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatgcatatttactttgTgcaaagttgtctgtcgggtg	10	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70056647	A	A	70056647	2	1	226	1	0	0	0	0	0	0	0	1	11583	1683	59	5		5	PBLD	10	70056647	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	6886057	70056647	65478100	828	171583											
HK1	3098	broad.mit.edu	37	chr10	71103616	71103616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctatgccatgcggctctccGatgaaactctcatagatatc	7	12	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71103616	T	T	71103616	3	4	226	1	0	0	0	0	1	0	0	0	7257	1058	37	3	281	3	HK1	10	71103616	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1046969	71103616	64431131	829	171584											
SAR1A	56681	broad.mit.edu	37	chr10	71912108	71912108	+	3'UTR	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagagagttgacagagactCttggcttctcaacgccagac	11	10	2	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71912108	G	G	71912108	1	3	226	0	1	0	0	0	0	0	0	0	13951	928	32	4		4	SAR1A	10	71912108	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	808492	71912108	63622639	830	171585											
CDH23	64072	broad.mit.edu	37	chr10	73455252	73455252	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactacatcaacctggtggaGatgacccctccagactctga	8	13	2	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73455252	T	T	73455252	3	4	226	1	0	0	0	0	1	0	0	0	3138	933	33	3	2676	3	CDH23	10	73455252	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1543144	73455252	62079495	831	171586											
CDH23	64072	broad.mit.edu	37	chr10	73500806	73500806	+	Intron	DEL	G	-	-													aaatgtctgcctggcccactGgtccctcagatctcatggat							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73500806	-	-	73500806	6	5	226	0	1	1	0	1	0	0	0	0	3138	1363	47	0		0	CDH23	10	73500806	Intron	DEL	G	TCGA-91-6829-01A-21D-1855-08	45554	73500806	62033941	832	171587											
SEC24C	9632	broad.mit.edu	37	chr10	75527670	75527670	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccaaggctgctgtgtagatCtctttctcttccctaaccag	7	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75527670	A	A	75527670	3	1	226	1	0	0	0	0	1	0	0	0	14109	913	32	3	2140	3	SEC24C	10	75527670	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2026864	75527670	60007077	833	171588											
NDST2	8509	broad.mit.edu	37	chr10	75563708	75563708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaatctcctcaaatgtgCtggggctagggaagctgcta	12	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75563708	A	A	75563708	3	1	226	1	0	0	0	0	1	0	0	0	10351	797	28	3	765	3	NDST2	10	75563708	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	36038	75563708	59971039	834	171589											
LRIT1	26103	broad.mit.edu	37	chr10	85993978	85993978	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgggccctggcacttcCtcagttcaagctggctgaag	12	13	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85993978	A	A	85993978	3	1	226	1	0	0	0	0	1	0	0	0	9034	681	24	2	1133	2	LRIT1	10	85993978	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	10430270	85993978	49540769	835	171590											
FAM35A	54537	broad.mit.edu	37	chr10	88930215	88930215	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatcttttgtctgtctGtatgttttttttcccttaga	6	8	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88930215	T	T	88930215	1	4	226	0	1	0	0	0	0	0	0	0	5604	1392	48	3		3	FAM35A	10	88930215	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2936237	88930215	46604532	836	171591											
RNLS	55328	broad.mit.edu	37	chr10	90341368	90341368	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taattgaagaaattccttgaGgtgccacaaagttacagtct	8	7	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90341368	A	A	90341368	3	1	226	1	0	0	0	0	1	0	0	0	13616	1000	35	4	801	4	RNLS	10	90341368	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1411153	90341368	45193379	837	171592											
LIPN	643418	broad.mit.edu	37	chr10	90534339	90534339	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaccattccaatccttaTtttcaatatatttaaaaaga	2	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	90534339	C	C	90534339	1	2	226	0	1	0	0	0	0	0	0	0	8902	1508	52	5		5	LIPN	10	90534339	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	192971	90534339	45000408	838	171593											
BTAF1	9044	broad.mit.edu	37	chr10	93717010	93717010	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcctttggaaagcttttGtgaagaactttgcaatgacc	10	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93717010	T	T	93717010	3	4	226	1	0	0	0	0	1	0	0	0	1545	1377	48	3	890	3	BTAF1	10	93717010	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3182671	93717010	41817737	839	171594											
BTAF1	9044	broad.mit.edu	37	chr10	93784522	93784522	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcttcctaagttgctgttgGactgcggtttgggaaatggc	13	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93784522	T	T	93784522	3	4	226	1	0	0	0	0	1	0	0	0	1545	1174	41	3	5011	3	BTAF1	10	93784522	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	67512	93784522	41750225	840	171595											
CPEB3	22849	broad.mit.edu	37	chr10	93896805	93896805	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagcgagccattcttcttGtatcaaggattatgatgtga	10	7	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93896805	A	A	93896805	1	1	226	0	1	0	0	0	0	0	0	0	3834	1392	48	4		4	CPEB3	10	93896805	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	112283	93896805	41637942	841	171596											
KIF11	3832	broad.mit.edu	37	chr10	94388606	94388606	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaagaagagcagattgTagaattgattgaaaaaattg	10	2	1	6			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94388606	A	A	94388606	3	1	226	1	0	0	0	0	1	0	0	0	8342	1638	57	5	1301	5	KIF11	10	94388606	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	491801	94388606	41146141	842	171597											
CYP2C19	1557	broad.mit.edu	37	chr10	96609673	96609673	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctatgtctcttgtttctaGggcacaaccatattaacttc	5	11	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96609673	T	T	96609673	5	4	226	1	0	0	0	0	0	0	1	0	4199	1014	35	2	1179	2	CYP2C19	10	96609673	Splice_Site	SNP	G	TCGA-91-6829-01A-21D-1855-08	2221067	96609673	38925074	843	171598											
TLL2	7093	broad.mit.edu	37	chr10	98133622	98133622	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgttcagctggggtgggGgcctcctttccagttctggg	17	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98133622	T	T	98133622	1	4	226	0	1	0	0	0	0	0	0	0	16069	1247	43	2		2	TLL2	10	98133622	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1523949	98133622	37401125	844	171599											
TM9SF3	56889	broad.mit.edu	37	chr10	98292782	98292782	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tatatattgtgtgaaacaatCgcataagatttagcattctc	6	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98292782	A	A	98292782	1	1	226	0	1	0	0	0	0	0	0	0	16102	899	31	3		3	TM9SF3	10	98292782	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	159160	98292782	37241965	845	171600											
C10orf12	26148	broad.mit.edu	37	chr10	98743640	98743640	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaccaagagcaaggaacaaAtcagataaactgaaagagat	8	7	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98743640	G	G	98743640	2	3	226	1	0	0	0	0	0	0	0	1	1600	98	4	5		5	C10orf12	10	98743640	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	450858	98743640	36791107	846	171601											
HPSE2	60495	broad.mit.edu	37	chr10	100995254	100995254	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaattttaaatgatccatcGaaacccctgccttaccttag	4	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100995254	C	C	100995254	1	2	226	0	1	0	0	0	0	0	0	0	7412	1073	37	4		4	HPSE2	10	100995254	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2251614	100995254	34539493	847	171602											
ABCC2	1244	broad.mit.edu	37	chr10	101557137	101557137	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcgctgcatgtttcaggcaAgggtacatcagcatcatggc	12	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	101557137	G	G	101557137	1	3	226	0	1	0	0	0	0	0	0	0	53	87	3	5		5	ABCC2	10	101557137	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	561883	101557137	33977610	848	171603											
DNMBP	23268	broad.mit.edu	37	chr10	101656083	101656083	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcggttggatttcttgaTgatggagtggatgttcagtt	13	4	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	101656083	C	C	101656083	3	2	226	1	0	0	0	0	1	0	0	0	4714	1464	51	5	1773	5	DNMBP	10	101656083	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	98946	101656083	33878664	849	171604											
PAX2	5076	broad.mit.edu	37	chr10	102546796	102546796	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccagagggaacatggcgtGggggtcaagggaaatagctt	18	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102546796	T	T	102546796	1	4	226	0	1	0	0	0	0	0	0	0	11573	1363	47	2		2	PAX2	10	102546796	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	890713	102546796	32987951	850	171605											
TMEM180	79847	broad.mit.edu	37	chr10	104228715	104228715	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttccttcttccccagggaCgaggatgggaagaccgcctg	14	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104228715	G	G	104228715	1	3	226	0	1	0	0	0	0	0	0	0	16222	551	19	4		4	TMEM180	10	104228715	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	1681919	104228715	31306032	851	171606											
COL17A1	1308	broad.mit.edu	37	chr10	105836256	105836256	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccaaatggctactgtgacCcagctatattaaccaagtac	6	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105836256	A	A	105836256	1	1	226	0	1	0	0	0	0	0	0	0	3706	638	22	2		2	COL17A1	10	105836256	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1607541	105836256	29698491	852	171607											
SORCS3	22986	broad.mit.edu	37	chr10	107005408	107005408	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctcatccaggacacaaaaGagattgcagttcatggtaag	9	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107005408	T	T	107005408	4	4	226	1	0	0	0	0	0	1	0	0	15046	943	33	3	3059	3	SORCS3	10	107005408	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1169152	107005408	28529339	853	171608											
SORCS1	114815	broad.mit.edu	37	chr10	108923735	108923735	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cattctactcacgctgctgtTgtggccagaccagtggacca	10	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	108923735	C	C	108923735	3	2	226	1	0	0	0	0	1	0	0	0	15044	1812	63	5	3294	5	SORCS1	10	108923735	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1918327	108923735	26611012	854	171609											
HABP2	3026	broad.mit.edu	37	chr10	115337733	115337733	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccttgtcatctcagacatGggctgcaactccttctgaag	8	13	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115337733	A	A	115337733	1	1	226	0	1	0	0	0	0	0	0	0	7004	1363	47	4		4	HABP2	10	115337733	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6413998	115337733	20197014	855	171610											
NRAP	4892	broad.mit.edu	37	chr10	115381984	115381984	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atacattagaacctcctaaaGgaattgttaggcttcagact	7	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115381984	A	A	115381984	1	1	226	0	1	0	0	0	0	0	0	0	10733	1015	35	4		4	NRAP	10	115381984	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	44251	115381984	20152763	856	171611											
C10orf81	79949	broad.mit.edu	37	chr10	115536880	115536880	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatgttgtattcccactgCagtgtgtctcagtgggaagg	14	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115536880	A	A	115536880	1	1	226	0	1	0	0	0	0	0	0	0	1630	725	25	3		3	C10orf81	10	115536880	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	154896	115536880	19997867	857	171612											
FGFR2	2263	broad.mit.edu	37	chr10	123239251	123239251	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgattacttttccaattaTttactcctctgatccatata	3	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123239251	A	A	123239251	1	1	226	0	1	0	0	0	0	0	0	0	5923	1508	52	5		5	FGFR2	10	123239251	3'UTR	SNP	T	TCGA-91-6829-01A-21D-1855-08	7702371	123239251	12295496	858	171613											
DMBT1	1755	broad.mit.edu	37	chr10	124390052	124390052	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggcttggtggatttaccCagctgcctctttgggggcac	14	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124390052	T	T	124390052	1	4	226	0	1	0	0	0	0	0	0	0	4617	609	21	4		4	DMBT1	10	124390052	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1150801	124390052	11144695	859	171614											
GPR26	2849	broad.mit.edu	37	chr10	125426441	125426441	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgcttcgccgtcttcaCtggcgccttccacgctctca	8	19	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125426441	T	T	125426441	3	4	226	1	0	0	0	0	1	0	0	0	6749	565	20	4	520	4	GPR26	10	125426441	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1036389	125426441	10108306	860	171615											
DOCK1	1793	broad.mit.edu	37	chr10	129231440	129231440	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgtttacagaagtctgaacGatgatggtctcgattccaca	9	9	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129231440	T	T	129231440	1	4	226	0	1	0	0	0	0	0	0	0	4724	1073	37	3		3	DOCK1	10	129231440	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3804999	129231440	6303307	861	171616											
MKI67	4288	broad.mit.edu	37	chr10	129904199	129904199	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tttgtcatcggtcattgattCctcagtgtgacctggtgtct	10	9	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129904199	T	T	129904199	3	4	226	1	0	0	0	0	1	0	0	0	9691	864	30	4	3877	4	MKI67	10	129904199	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	672759	129904199	5630548	862	171617											
MKI67	4288	broad.mit.edu	37	chr10	129913427	129913427	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttggaagagagattttcTggcttagtggcagagtcagc	14	5	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	129913427	C	C	129913427	2	2	226	1	0	0	0	0	0	0	0	1	9691	1567	55	5		5	MKI67	10	129913427	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	9228	129913427	5621320	863	171618											
EBF3	253738	broad.mit.edu	37	chr10	131666158	131666158	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccttcactgggactgatgGccttgatgcacggagtggct	14	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131666158	A	A	131666158	3	1	226	1	0	0	0	0	1	0	0	0	4922	1203	42	4	914	4	EBF3	10	131666158	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1752731	131666158	3868589	864	171619											
TCERG1L	256536	broad.mit.edu	37	chr10	133106583	133106583	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaaacgaggcttttcatgCccatggaaaaaccttgactc	8	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133106583	A	A	133106583	2	1	226	1	0	0	0	0	0	0	0	1	15808	726	26	3		3	TCERG1L	10	133106583	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1440425	133106583	2428164	865	171620											
C10orf93	255352	broad.mit.edu	37	chr10	134754576	134754576	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattcctcctaaggcaacaTaaagaagcacaattagaccg	6	10	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134754576	A	A	134754576	1	1	226	0	1	0	0	0	0	0	0	0	1636	1421	49	5		5	C10orf93	10	134754576	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1647993	134754576	780171	866	171621											
GPR123	84435	broad.mit.edu	37	chr10	134940851	134940851	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtagtgagtaccgggcacCcagaaccgggagctgggagc	17	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134940851	A	A	134940851	1	1	226	0	1	0	0	0	0	0	0	0	6702	638	22	2		2	GPR123	10	134940851	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	186275	134940851	593896	867	171622											
ADAM8	101	broad.mit.edu	37	chr10	135083065	135083065	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgggctcagggccaacccTgttgtggaccccaaggggcc	15	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135083065	C	C	135083065	1	2	226	0	1	0	0	0	0	0	0	0	252	1595	55	5		5	ADAM8	10	135083065	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	142214	135083065	451682	868	171623											
B4GALNT4	338707	broad.mit.edu	37	chr11	376276	376276	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttctataaatacatgaagAtggacaaggaggagggggat	15	3	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	376276	T	T	376276	3	4	226	1	0	0	0	0	1	0	0	0	1274	333	12	5	1272	5	B4GALNT4	11	376276	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08		376276	134630240	869	171624											
MUC2	4583	broad.mit.edu	37	chr11	1075905	1075905	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acctcacccgccacctggctGtgcttaacggggccgtgtga	12	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1075905	C	C	1075905	3	2	226	1	0	0	0	0	1	0	0	0	10069	1377	48	4	337	4	MUC2	11	1075905	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	699629	1075905	133930611	870	171625											
MUC2	4583	broad.mit.edu	37	chr11	1081575	1081575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtaagtggccccaccgGggttgccccaacaaaggccc	13	15	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1081575	T	T	1081575	1	4	226	0	1	0	0	0	0	0	0	0	10069	1247	43	2		2	MUC2	11	1081575	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	5670	1081575	133924941	871	171626											
KRTAP5-6	440023	broad.mit.edu	37	chr11	1718521	1718521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggctccggctgtgggGgctgtggctctggctgtggg	21	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1718521	T	T	1718521	3	4	226	1	0	0	0	0	1	0	0	0	8637	1232	43	2	48	2	KRTAP5-6	11	1718521	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	636946	1718521	133287995	872	171627											
TRIM21	6737	broad.mit.edu	37	chr11	4406605	4406605	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatcattgaaaccaggactGaagaagggccgcagaggtcc	12	11	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4406605	A	A	4406605	2	1	226	1	0	0	0	0	0	0	0	1	16619	1281	45	4		4	TRIM21	11	4406605	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	2688084	4406605	130599911	873	171628											
OR52K2	119774	broad.mit.edu	37	chr11	4470615	4470615	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatccaactgccttcttgTtggtggggattccaggcctg	11	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4470615	G	G	4470615	3	3	226	1	0	0	0	0	1	0	0	0	11218	1722	60	5	48	5	OR52K2	11	4470615	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	64010	4470615	130535901	874	171629											
HBE1	3046	broad.mit.edu	37	chr11	5290650	5290650	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaatgtcaaaatataaaGccaaaaaatcacatcaccag	3	8	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5290650	T	T	5290650	1	4	226	0	1	0	0	0	0	0	0	0	7046	986	34	3		3	HBE1	11	5290650	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	820035	5290650	129715866	875	171630											
OR51B5	282763	broad.mit.edu	37	chr11	5462856	5462856	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catagattgaaaatgattgcCtgtattcctgccttcccagt	7	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5462856	T	T	5462856	1	4	226	0	1	0	0	0	0	0	0	0	11185	696	24	4		4	OR51B5	11	5462856	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	172206	5462856	129543660	876	171631											
OR52L1	338751	broad.mit.edu	37	chr11	6008214	6008214	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaaatggggcaaccatcatCctgagaagaataaagtgact	9	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6008214	G	G	6008214	1	3	226	0	1	0	0	0	0	0	0	0	11219	869	30	4		4	OR52L1	11	6008214	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	545358	6008214	128998302	877	171632											
C11orf42	160298	broad.mit.edu	37	chr11	6231320	6231320	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatactcaccaaatggcCgagcagagagagcctatgaa	12	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6231320	A	A	6231320	2	1	226	1	0	0	0	0	0	0	0	1	1653	644	23	1		1	C11orf42	11	6231320	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	223106	6231320	128775196	878	171633											
FAM160A2	84067	broad.mit.edu	37	chr11	6240128	6240128	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagtaacccctatatagcCcattgccccagcaatgcata	6	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6240128	A	A	6240128	1	1	226	0	1	0	0	0	0	0	0	0	5515	638	22	2		2	FAM160A2	11	6240128	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	8808	6240128	128766388	879	171634											
CCKBR	887	broad.mit.edu	37	chr11	6291926	6291926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcccgggtgtggttatggCcgtggcctacgggcttatct	14	11	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6291926	A	A	6291926	3	1	226	1	0	0	0	0	1	0	0	0	2909	739	26	3	718	3	CCKBR	11	6291926	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	51798	6291926	128714590	880	171635											
DCHS1	8642	broad.mit.edu	37	chr11	6644758	6644758	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgcctggaggctgattctCggccacgctggtgctgagta	15	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6644758	A	A	6644758	4	1	226	1	0	0	0	0	0	1	0	0	4320	893	31	3	1751	3	DCHS1	11	6644758	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	352832	6644758	128361758	881	171636											
OR10A5	144124	broad.mit.edu	37	chr11	6865488	6865488	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccctccattcccaagataCcaagttcagtggccactgca	7	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6865488	G	G	6865488	1	3	226	0	1	0	0	0	0	0	0	0	10987	522	18	4		4	OR10A5	11	6865488	5'Flank	SNP	C	TCGA-91-6829-01A-21D-1855-08	220730	6865488	128141028	882	171637											
OR10A2	341276	broad.mit.edu	37	chr11	6891751	6891751	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctaaatcaaataattcacctGagggcaagaagctgctatca	7	9	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6891751	A	A	6891751	3	1	226	1	0	0	0	0	1	0	0	0	10984	1291	45	4	768	4	OR10A2	11	6891751	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	26263	6891751	128114765	883	171638											
RBMXL2	27288	broad.mit.edu	37	chr11	7110638	7110638	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgagagcagccggcggggccCgccgcctccccgcagccgcg	16	20	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7110638	A	A	7110638	3	1	226	1	0	0	0	0	1	0	0	0	13262	652	23	1	289	1	RBMXL2	11	7110638	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	218887	7110638	127895878	884	171639											
RIC3	79608	broad.mit.edu	37	chr11	8132164	8132164	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacagtgaagaaagtgcaGggcacagggccaagaaggaa	14	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8132164	T	T	8132164	1	4	226	0	1	0	0	0	0	0	0	0	13463	1015	35	2		2	RIC3	11	8132164	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	1021526	8132164	126874352	885	171640											
RIC3	79608	broad.mit.edu	37	chr11	8160051	8160051	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatagctcaaaaaaaaaaacGccaaaagatgaggtttccaa	6	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8160051	C	C	8160051	1	2	226	0	1	0	0	0	0	0	0	0	13463	1102	38	4		4	RIC3	11	8160051	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	27887	8160051	126846465	886	171641											
TMEM41B	440026	broad.mit.edu	37	chr11	9316992	9316992	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccaagataatatcaaagtCaagttcacaacatgaagttt	6	7	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9316992	G	G	9316992	1	3	226	0	1	0	0	0	0	0	0	0	16288	841	29	4		4	TMEM41B	11	9316992	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1156941	9316992	125689524	887	171642											
IPO7	10527	broad.mit.edu	37	chr11	9455345	9455345	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagatgtggcagctactaCcccttgtatttgaagtcttt	8	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9455345	T	T	9455345	3	4	226	1	0	0	0	0	1	0	0	0	7867	507	18	4	2096	4	IPO7	11	9455345	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	138353	9455345	125551171	888	171643											
ZNF143	7702	broad.mit.edu	37	chr11	9495418	9495418	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatgtttttatagttgatatCattttgaaattgtataaagt	6	1	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9495418	G	G	9495418	1	3	226	0	1	0	0	0	0	0	0	0	17858	841	29	4		4	ZNF143	11	9495418	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	40073	9495418	125511098	889	171644											
SBF2	81846	broad.mit.edu	37	chr11	10013941	10013941	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtctataaataatgccTtcatttaataagagctatac	4	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10013941	A	A	10013941	1	1	226	0	1	0	0	0	0	0	0	0	13971	1624	56	5		5	SBF2	11	10013941	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	518523	10013941	124992575	890	171645											
USP47	55031	broad.mit.edu	37	chr11	11955359	11955359	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaactgcagagttgatgatGatattttacattttctagat	9	4	1	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11955359	A	A	11955359	1	1	226	0	1	0	0	0	0	0	0	0	17205	1305	45	4		4	USP47	11	11955359	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1941418	11955359	123051157	891	171646											
MRGPRX4	117196	broad.mit.edu	37	chr11	18194989	18194989	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcgcaggaacgctgtctcCatctacatcctcaacctggc	8	15	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18194989	A	A	18194989	2	1	226	1	0	0	0	0	0	0	0	1	9863	581	21	2		2	MRGPRX4	11	18194989	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	6239630	18194989	116811527	892	171647											
HPS5	11234	broad.mit.edu	37	chr11	18316715	18316715	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttacgcacaaagctagaaaCactagaagtcaaataacaaa	5	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18316715	A	A	18316715	3	1	226	1	0	0	0	0	1	0	0	0	7409	492	17	3	1793	3	HPS5	11	18316715	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	121726	18316715	116689801	893	171648											
LDHC	3948	broad.mit.edu	37	chr11	18434318	18434318	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaattgaggatgatgaaaaCtcccagtgtaaaattactat	7	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18434318	G	G	18434318	3	3	226	1	0	0	0	0	1	0	0	0	8774	564	20	4	56	4	LDHC	11	18434318	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	117603	18434318	116572198	894	171649											
ANO5	203859	broad.mit.edu	37	chr11	22272548	22272548	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttctttgcaatattcatgGgaatttggggtgagtaaata	11	3	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22272548	C	C	22272548	3	2	226	1	0	0	0	0	1	0	0	0	700	1233	43	4	1217	4	ANO5	11	22272548	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3838230	22272548	112733968	895	171650											
SLC17A6	57084	broad.mit.edu	37	chr11	22387315	22387315	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accaaactatcttacaagttCttcctcagcaaaactaattt	2	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22387315	T	T	22387315	1	4	226	0	1	0	0	0	0	0	0	0	14534	928	32	4		4	SLC17A6	11	22387315	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	114767	22387315	112619201	896	171651											
KCNA4	3739	broad.mit.edu	37	chr11	30032523	30032523	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcattttcagtctctctgTggtagaaatagttaaagtta	7	7	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30032523	A	A	30032523	3	1	226	1	0	0	0	0	1	0	0	0	8075	1696	59	5	262	5	KCNA4	11	30032523	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	7645208	30032523	104973993	897	171652											
CCDC73	493860	broad.mit.edu	37	chr11	32676475	32676475	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccatcttatattgacatGtgactttggactttatcaag	6	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32676475	T	T	32676475	3	4	226	1	0	0	0	0	1	0	0	0	2874	1377	48	3	2586	3	CCDC73	11	32676475	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2643952	32676475	102330041	898	171653											
DEPDC7	91614	broad.mit.edu	37	chr11	33047176	33047176	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaacaaggtactaaatccCagtttctctatgatttttct	5	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33047176	T	T	33047176	1	4	226	0	1	0	0	0	0	0	0	0	4484	609	21	4		4	DEPDC7	11	33047176	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	370701	33047176	101959340	899	171654											
PHF21A	51317	broad.mit.edu	37	chr11	45991437	45991437	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtactttgatgggctgagGaggtgttgcctgaacctgct	15	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45991437	A	A	45991437	3	1	226	1	0	0	0	0	1	0	0	0	11928	1174	41	4	1485	4	PHF21A	11	45991437	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	12944261	45991437	89015079	900	171655											
ARFGAP2	84364	broad.mit.edu	37	chr11	47198363	47198363	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaactgcgcgaagcctcttAaaaagagtctggatttcggt	12	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47198363	C	C	47198363	3	2	226	1	0	0	0	0	1	0	0	0	852	359	13	5	1587	5	ARFGAP2	11	47198363	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	1206926	47198363	87808153	901	171656											
MADD	8567	broad.mit.edu	37	chr11	47330186	47330186	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcataaaggagaagctggcAggcagccccattcgtacttc	11	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47330186	T	T	47330186	2	4	226	1	0	0	0	0	0	0	0	1	9240	175	7	5		5	MADD	11	47330186	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	131823	47330186	87676330	902	171657											
OR4B1	119765	broad.mit.edu	37	chr11	48238557	48238557	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttccttagctgcctgtccTtggtggagatcagttattcc	9	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48238557	C	C	48238557	2	2	226	1	0	0	0	0	0	0	0	1	11138	1606	56	5		5	OR4B1	11	48238557	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	908371	48238557	86767959	903	171658											
OR4C46	119749	broad.mit.edu	37	chr11	51515322	51515322	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagagtttgttttgctggGgcttacagagaatccaaaga	12	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51515322	A	A	51515322	3	1	226	1	0	0	0	0	1	0	0	0	11145	1232	43	4	43	4	OR4C46	11	51515322	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3276765	51515322	83491194	904	171659											
OR4A15	81328	broad.mit.edu	37	chr11	55135885	55135885	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcttatgctgttggcgGcctggattggaggctttctt	14	7	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55135885	A	A	55135885	3	1	226	1	0	0	0	0	1	0	0	0	11134	1203	42	4	528	4	OR4A15	11	55135885	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3620563	55135885	79870631	905	171660											
OR4C15	81309	broad.mit.edu	37	chr11	55321892	55321892	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaattttcctttgtcctaAttgcagactatacatgatcc	5	10	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55321892	G	G	55321892	3	3	226	1	0	0	0	0	1	0	0	0	11142	101	4	5	112	5	OR4C15	11	55321892	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	186007	55321892	79684624	906	171661											
OR4C6	219432	broad.mit.edu	37	chr11	55433228	55433228	+	Frame_Shift_Del	DEL	T	-	-													acacccacatcctgggcctcTtagttaccctcaacagtggg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55433228	-	-	55433228	7	5	226	1	0	1	0	1	0	0	0	0	11146	1606	56	0	588	0	OR4C6	11	55433228	Frame_Shift_Del	DEL	T	TCGA-91-6829-01A-21D-1855-08	111336	55433228	79573288	907	171662											
OR5D18	219438	broad.mit.edu	37	chr11	55588013	55588013	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgtcaaggatacagtcaCcgagatactggacaccaaag	10	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55588013	T	T	55588013	3	4	226	1	0	0	0	0	1	0	0	0	11251	507	18	4	910	4	OR5D18	11	55588013	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	154785	55588013	79418503	908	171663											
OR8J3	81168	broad.mit.edu	37	chr11	55904398	55904398	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttatcagtatccagtgagTggttggtttggggctgcaaa	13	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55904398	C	C	55904398	3	2	226	1	0	0	0	0	1	0	0	0	11336	1696	59	5	152	5	OR8J3	11	55904398	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	316385	55904398	79102118	909	171664											
OR5T1	390155	broad.mit.edu	37	chr11	56043784	56043784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattgagatagtcactatcCtgattgtcctgatctcctat	6	10	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56043784	A	A	56043784	3	1	226	1	0	0	0	0	1	0	0	0	11275	680	24	2	672	2	OR5T1	11	56043784	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	139386	56043784	78962732	910	171665											
OR8J1	219477	broad.mit.edu	37	chr11	56127836	56127836	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgctctatgggctgacCatggcagggaacctgggcat	15	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56127836	G	G	56127836	2	3	226	1	0	0	0	0	0	0	0	1	11335	581	21	4		4	OR8J1	11	56127836	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	84052	56127836	78878680	911	171666											
OR5M8	219484	broad.mit.edu	37	chr11	56258013	56258013	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcatagggattactgtGgtataaaatacagctaccat	8	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56258013	T	T	56258013	2	4	226	1	0	0	0	0	0	0	0	1	11270	1335	47	2		2	OR5M8	11	56258013	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	130177	56258013	78748503	912	171667											
ZDHHC5	25921	broad.mit.edu	37	chr11	57440517	57440517	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgttctgccgctgtgtGggcctgggctatgcggcagg	17	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57440517	T	T	57440517	1	4	226	0	1	0	0	0	0	0	0	0	17744	1363	47	2		2	ZDHHC5	11	57440517	5'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	1182504	57440517	77565999	913	171668											
OR10Q1	219960	broad.mit.edu	37	chr11	57996359	57996359	+	5'Flank	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcatgtcttatgcaaAagaataggacgcgctgagct	11	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57996359	T	T	57996359	1	4	226	0	1	0	0	0	0	0	0	0	11010	29	1	5		5	OR10Q1	11	57996359	5'Flank	SNP	A	TCGA-91-6829-01A-21D-1855-08	555842	57996359	77010157	914	171669											
OR5B21	219968	broad.mit.edu	37	chr11	58275014	58275014	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	caacttgctgatgcgtgtgtCagagcatgagagagccagga	14	8	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58275014	A	A	58275014	3	1	226	1	0	0	0	0	1	0	0	0	11245	826	29	3	366	3	OR5B21	11	58275014	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	278655	58275014	76731502	915	171670											
GLYAT	10249	broad.mit.edu	37	chr11	58480262	58480262	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtaaatgctgtttccagttgAtgagttctggtgatccaagg	12	6	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58480262	T	T	58480262	3	4	226	1	0	0	0	0	1	0	0	0	6543	333	12	5	619	5	GLYAT	11	58480262	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	205248	58480262	76526254	916	171671											
GLYAT	10249	broad.mit.edu	37	chr11	58483117	58483117	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaggccacttgtccatcaGagcctttagattaaacagat	7	10	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58483117	T	T	58483117	1	4	226	0	1	0	0	0	0	0	0	0	6543	957	33	3		3	GLYAT	11	58483117	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2855	58483117	76523399	917	171672											
DTX4	23220	broad.mit.edu	37	chr11	58959801	58959801	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggtgaaggccctttaggGcccttgctcaagtgatctgg	14	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58959801	A	A	58959801	1	1	226	0	1	0	0	0	0	0	0	0	4837	1218	42	4		4	DTX4	11	58959801	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	476684	58959801	76046715	918	171673											
OR4D11	219986	broad.mit.edu	37	chr11	59271729	59271729	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctaatgacgctgaggtcTcaggcaggagggggcaggag	17	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59271729	C	C	59271729	2	2	226	1	0	0	0	0	0	0	0	1	11149	1538	54	5		5	OR4D11	11	59271729	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	311928	59271729	75734787	919	171674											
OR4D9	390199	broad.mit.edu	37	chr11	59282749	59282749	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctgtgatggcgtttgacCgctatatagccatctccaag	9	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59282749	T	T	59282749	3	4	226	1	0	0	0	0	1	0	0	0	11153	652	23	4	366	4	OR4D9	11	59282749	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	11020	59282749	75723767	920	171675											
OR4D9	390199	broad.mit.edu	37	chr11	59283102	59283102	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggaaagccatctccacCtgcacctcccacatcaccgt	7	17	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59283102	A	A	59283102	2	1	226	1	0	0	0	0	0	0	0	1	11153	668	24	2		2	OR4D9	11	59283102	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	353	59283102	75723414	921	171676											
GIF	2694	broad.mit.edu	37	chr11	59610633	59610633	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgcagagaagagaacacAacggttagacagagacatcc	10	9	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	59610633	C	C	59610633	1	2	226	0	1	0	0	0	0	0	0	0	6440	145	5	5		5	GIF	11	59610633	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	327531	59610633	75395883	922	171677											
MS4A3	932	broad.mit.edu	37	chr11	59828748	59828749	+	Missense_Mutation	DNP	GG	TT	TT													ctgtctaccagcccatagatGgatcaccagattatcagaaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	59828749	TT	TT	59828748	3	4	226	1	0	0	0	0	1	0	0	0	9955	1349	47	2	117	2	MS4A3	11	59828748	Missense_Mutation	DNP	GG	TCGA-91-6829-01A-21D-1855-08	218115	59828748	75177768	923	171678											
MS4A10	341116	broad.mit.edu	37	chr11	60565735	60565735	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtctatggaagtcgcttcGtctctcaagcctcagtttcc	9	12	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60565735	A	A	60565735	1	1	226	0	1	0	0	0	0	0	0	0	9949	1160	40	4		4	MS4A10	11	60565735	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	736987	60565735	74440781	924	171679											
TMEM132A	54972	broad.mit.edu	37	chr11	60703723	60703723	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtcgggggcaacacaGgtgtgaggggcaagtttgag	19	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60703723	T	T	60703723	3	4	226	1	0	0	0	0	1	0	0	0	16168	1000	35	2	2461	2	TMEM132A	11	60703723	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	137988	60703723	74302793	925	171680											
PGA5	5222	broad.mit.edu	37	chr11	61018548	61018548	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggatgtttatcacccagCgcctatcacggctgaatcgg	10	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61018548	G	G	61018548	1	3	226	0	1	0	0	0	0	0	0	0	11867	783	27	4		4	PGA5	11	61018548	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	314825	61018548	73987968	926	171681											
VWCE	220001	broad.mit.edu	37	chr11	61026549	61026549	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaaagcgagtgagtgtggAccatgagctcctgccgggct	14	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61026549	G	G	61026549	2	3	226	1	0	0	0	0	0	0	0	1	17372	262	10	5		5	VWCE	11	61026549	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	8001	61026549	73979967	927	171682											
AHNAK	79026	broad.mit.edu	37	chr11	62288621	62288621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaatgtccaaactggggCcttttatgtcaatttcaggg	10	8	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62288621	A	A	62288621	3	1	226	1	0	0	0	0	1	0	0	0	414	739	26	3	4524	3	AHNAK	11	62288621	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1262072	62288621	72717895	928	171683											
EEF1G	1937	broad.mit.edu	37	chr11	62338368	62338368	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagaatacagggtaaccTagatacctcgtcactttgtt	8	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	62338368	C	C	62338368	1	2	226	0	1	0	0	0	0	0	0	0	4968	1537	53	5		5	EEF1G	11	62338368	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	49747	62338368	72668148	929	171684											
NXF1	10482	broad.mit.edu	37	chr11	62568983	62568983	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaactttccctccctgaCagatcccaccttatcaccac	2	19	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62568983	A	A	62568983	1	1	226	0	1	0	0	0	0	0	0	0	10877	493	17	3		3	NXF1	11	62568983	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	230615	62568983	72437533	930	171685											
MARK2	2011	broad.mit.edu	37	chr11	63672574	63672574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccttcctgctttactcgGggtgggttgggggttggggg	20	7	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63672574	T	T	63672574	1	4	226	0	1	0	0	0	0	0	0	0	9405	1247	43	2		2	MARK2	11	63672574	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1103591	63672574	71333942	931	171686											
CDC42BPG	55561	broad.mit.edu	37	chr11	64606097	64606097	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aacaagggggtagggcagctCccctcctgcagtggcctttg	14	12	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64606097	G	G	64606097	1	3	226	0	1	0	0	0	0	0	0	0	3104	870	30	4		4	CDC42BPG	11	64606097	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	933523	64606097	70400419	932	171687											
PPP2R5B	5526	broad.mit.edu	37	chr11	64694315	64694315	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagccctcaacgagctgGtggagtgtgtggggagcacc	18	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64694315	A	A	64694315	3	1	226	1	0	0	0	0	1	0	0	0	12494	1261	44	4	337	4	PPP2R5B	11	64694315	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	88218	64694315	70312201	933	171688											
BATF2	116071	broad.mit.edu	37	chr11	64756757	64756757	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcagaggaagggttgtcGggagaggaccccagcttccc	17	10	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64756757	T	T	64756757	2	4	226	1	0	0	0	0	0	0	0	1	1331	1103	39	1		1	BATF2	11	64756757	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	62442	64756757	70249759	934	171689											
RAB1B	81876	broad.mit.edu	37	chr11	66039815	66039815	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggacctcagctgacctgctCctctgcctactgtctcctag	8	16	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66039815	A	A	66039815	1	1	226	0	1	0	0	0	0	0	0	0	13014	870	30	3		3	RAB1B	11	66039815	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1283058	66039815	68966701	935	171690											
TMEM151A	256472	broad.mit.edu	37	chr11	66061839	66061839	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctccctgtgccgcgagtCgcactggaagtgcctgctcc	12	15	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66061839	A	A	66061839	4	1	226	1	0	0	0	0	0	1	0	0	16193	893	31	3	128	3	TMEM151A	11	66061839	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	22024	66061839	68944677	936	171691											
CD248	57124	broad.mit.edu	37	chr11	66084402	66084402	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggaagagagcgtagcagcTgctggggccgcaggcggcac	19	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66084402	A	A	66084402	3	1	226	1	0	0	0	0	1	0	0	0	3019	1580	55	5	2180	5	CD248	11	66084402	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	22563	66084402	68922114	937	171692											
BBS1	582	broad.mit.edu	37	chr11	66287001	66287001	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcttcatcctcctttgccCtctttcttccctcatgtggc	4	18	5	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66287001	G	G	66287001	1	3	226	0	1	0	0	0	0	0	0	0	1340	696	24	4		4	BBS1	11	66287001	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	202599	66287001	68719515	938	171693											
CABP2	51475	broad.mit.edu	37	chr11	67287517	67287517	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgccctcagccccagtggcCgcacctcccggaaggcgtcc	11	21	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67287517	T	T	67287517	1	4	226	0	1	0	0	0	0	0	0	0	2558	667	23	4		4	CABP2	11	67287517	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1000516	67287517	67718999	939	171694											
TBX10	347853	broad.mit.edu	37	chr11	67400069	67400069	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggctagggtcagggtcagacAgtaccaggagtccaggtcac	15	10	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67400069	T	T	67400069	1	4	226	0	1	0	0	0	0	0	0	0	15773	203	7	5		5	TBX10	11	67400069	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	112552	67400069	67606447	940	171695											
ALDH3B2	222	broad.mit.edu	37	chr11	67432005	67432005	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctgcatcacaggctccgtCtcctgcacgtccaccagcac	7	19	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67432005	A	A	67432005	3	1	226	1	0	0	0	0	1	0	0	0	500	912	32	3	434	3	ALDH3B2	11	67432005	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	31936	67432005	67574511	941	171696											
FGF3	2248	broad.mit.edu	37	chr11	69631115	69631115	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagagtcgtcccctcttgttCatggccaggtaccgcccgga	11	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	69631115	G	G	69631115	3	3	226	1	0	0	0	0	1	0	0	0	5910	826	29	4	430	4	FGF3	11	69631115	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2199110	69631115	65375401	942	171697											
INPPL1	3636	broad.mit.edu	37	chr11	71948810	71948810	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttccctccaccccgcatccgGgagagcatccaggaagacct	9	17	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71948810	C	C	71948810	2	2	226	1	0	0	0	0	0	0	0	1	7831	1219	43	4		4	INPPL1	11	71948810	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	2317695	71948810	63057706	943	171698											
C11orf30	56946	broad.mit.edu	37	chr11	76250491	76250491	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtaagatatggaaagccatCtagaatctttctttagagat	9	5	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76250491	T	T	76250491	1	4	226	0	1	0	0	0	0	0	0	0	1648	928	32	4		4	C11orf30	11	76250491	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4301681	76250491	58756025	944	171699											
LRRC32	2615	broad.mit.edu	37	chr11	76371892	76371892	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtttgttctcccgcaggtCaagccaggtgagctggaact	12	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76371892	A	A	76371892	3	1	226	1	0	0	0	0	1	0	0	0	9074	826	29	3	1247	3	LRRC32	11	76371892	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	121401	76371892	58634624	945	171700											
MYO7A	4647	broad.mit.edu	37	chr11	76867955	76867955	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgacaactcaagccgtttcGgaaagtacatcgacatccac	7	12	1	1	rs111033283		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76867955	A	A	76867955	3	1	226	1	0	0	0	0	1	0	0	0	10176	1117	39	4	662	4	MYO7A	11	76867955	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	496063	76867955	58138561	946	171701											
GDPD4	220032	broad.mit.edu	37	chr11	76979748	76979748	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccaagctgattctgggacTctgctcatctgagacaatgt	10	10	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76979748	A	A	76979748	1	1	226	0	1	0	0	0	0	0	0	0	6390	1566	54	5		5	GDPD4	11	76979748	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	111793	76979748	58026768	947	171702											
RAB30	27314	broad.mit.edu	37	chr11	82705223	82705223	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttccattaaatgaaatttTctcctctcccccagcaacac	2	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82705223	C	C	82705223	1	2	226	0	1	0	0	0	0	0	0	0	13027	1798	62	5		5	RAB30	11	82705223	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	5725475	82705223	52301293	948	171703											
DLG2	1740	broad.mit.edu	37	chr11	83252706	83252706	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacaagcaaatattctaGtacaaaaggcattcttacct	6	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83252706	T	T	83252706	1	4	226	0	1	0	0	0	0	0	0	0	4595	1044	36	3		3	DLG2	11	83252706	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	547483	83252706	51753810	949	171704											
CCDC89	220388	broad.mit.edu	37	chr11	85396854	85396854	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttgagcttctcagcctccTgcatcatcttctcctccagc	5	18	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85396854	A	A	85396854	3	1	226	1	0	0	0	0	1	0	0	0	2894	1580	55	5	808	5	CCDC89	11	85396854	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	2144148	85396854	49609662	950	171705											
CCDC83	220047	broad.mit.edu	37	chr11	85627137	85627137	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcctcatcagatgagaGcactatcttacatcttagtc	7	10	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85627137	A	A	85627137	3	1	226	1	0	0	0	0	1	0	0	0	2885	971	34	4	1072	4	CCDC83	11	85627137	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	230283	85627137	49379379	951	171706											
NOX4	50507	broad.mit.edu	37	chr11	89059881	89059881	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcaaagtcttagaaattGcactcattccttctttagag	6	8	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89059881	A	A	89059881	1	1	226	0	1	0	0	0	0	0	0	0	10653	1334	46	4		4	NOX4	11	89059881	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	3432744	89059881	45946635	952	171707											
CHORDC1	26973	broad.mit.edu	37	chr11	89944325	89944325	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactactattctctcttttGgataactgcttaactgtacc	4	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89944325	T	T	89944325	1	4	226	0	1	0	0	0	0	0	0	0	3396	1363	47	2		2	CHORDC1	11	89944325	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	884444	89944325	45062191	953	171708											
C11orf54	28970	broad.mit.edu	37	chr11	93483475	93483475	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtggtagccaagtttttaCctaatgttaaataatcttat	6	6	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93483475	A	A	93483475	1	1	226	0	1	0	0	0	0	0	0	0	1661	522	18	3		3	C11orf54	11	93483475	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3539150	93483475	41523041	954	171709											
MED17	9440	broad.mit.edu	37	chr11	93528312	93528313	+	Intron	DNP	GG	TT	TT													ggtagctcttagggtgtattGggagaataatgagagcaaag							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	93528313	TT	TT	93528312	1	4	226	0	1	0	0	0	0	0	0	0	9528	1363	47	2		2	MED17	11	93528312	Intron	DNP	GG	TCGA-91-6829-01A-21D-1855-08	44837	93528312	41478204	955	171710											
DYNC2H1	79659	broad.mit.edu	37	chr11	103039461	103039461	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaacattttctccaattgTcaatatttttatttctgcct	3	9	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103039461	C	C	103039461	1	2	226	0	1	0	0	0	0	0	0	0	4886	1682	58	5		5	DYNC2H1	11	103039461	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	9511149	103039461	31967055	956	171711											
SLC35F2	54733	broad.mit.edu	37	chr11	107676120	107676120	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataattgttccaaacaggccCaccattcctaaaaactcctg	4	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107676120	A	A	107676120	2	1	226	1	0	0	0	0	0	0	0	1	14703	581	21	2		2	SLC35F2	11	107676120	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	4636659	107676120	27330396	957	171712											
PHLDB1	23187	broad.mit.edu	37	chr11	118485197	118485197	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaggggcgagggctggagaGagtgctggtgtgactggttt	21	4	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118485197	A	A	118485197	1	1	226	0	1	0	0	0	0	0	0	0	11946	957	33	4		4	PHLDB1	11	118485197	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	10809077	118485197	16521319	958	171713											
MCAM	4162	broad.mit.edu	37	chr11	119183414	119183415	+	Intron	DNP	GG	TT	TT													gtcaaccctgggctggataaGggggagccagcaggagtttc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	119183415	TT	TT	119183414	1	4	226	0	1	0	0	0	0	0	0	0	9461	1015	35	2		2	MCAM	11	119183414	Intron	DNP	GG	TCGA-91-6829-01A-21D-1855-08	698217	119183414	15823102	959	171714											
SC5DL	6309	broad.mit.edu	37	chr11	121174109	121174109	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcttgtactccgtgttgcaGattactatttttttacacca	5	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	121174109	C	C	121174109	3	2	226	1	0	0	0	0	1	0	0	0	13978	942	33	4	27	4	SC5DL	11	121174109	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1990695	121174109	13832407	960	171715											
UBASH3B	84959	broad.mit.edu	37	chr11	122647789	122647789	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cccctgccccgggagtacgtCctctacctccgtcccaccgg	9	21	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122647789	T	T	122647789	2	4	226	1	0	0	0	0	0	0	0	1	16966	842	30	4		4	UBASH3B	11	122647789	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1473680	122647789	12358727	961	171716											
GRAMD1B	57476	broad.mit.edu	37	chr11	123469444	123469444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcaagatgggctccagcCtgcgtcagagcactgcttgt	13	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123469444	A	A	123469444	1	1	226	0	1	0	0	0	0	0	0	0	6814	696	24	2		2	GRAMD1B	11	123469444	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	821655	123469444	11537072	962	171717											
SCN3B	55800	broad.mit.edu	37	chr11	123513124	123513124	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtccacagagagcaggaCgccctagagaccctgtgcct	11	15	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123513124	T	T	123513124	1	4	226	0	1	0	0	0	0	0	0	0	14032	551	19	4		4	SCN3B	11	123513124	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	43680	123513124	11493392	963	171718											
OR10G9	219870	broad.mit.edu	37	chr11	123893682	123893682	+	5'Flank	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaatgctgggtgctcctTatatccccagagggagagag	14	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123893682	C	C	123893682	1	2	226	0	1	0	0	0	0	0	0	0	10998	1769	61	5		5	OR10G9	11	123893682	5'Flank	SNP	T	TCGA-91-6829-01A-21D-1855-08	380558	123893682	11112834	964	171719											
OR10G9	219870	broad.mit.edu	37	chr11	123894352	123894352	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggcctcgggctgctttctCctgatagtgctgtcttatgt	12	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123894352	T	T	123894352	2	4	226	1	0	0	0	0	0	0	0	1	10998	842	30	4		4	OR10G9	11	123894352	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	670	123894352	11112164	965	171720											
OR8D2	283160	broad.mit.edu	37	chr11	124189574	124189574	+	Frame_Shift_Del	DEL	C	-	-													atcacaaaaataatgactgaCcgtatgagacctacagaatg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	124189574	-	-	124189574	7	5	226	1	0	1	0	1	0	0	0	0	11326	507	18	0	418	0	OR8D2	11	124189574	Frame_Shift_Del	DEL	C	TCGA-91-6829-01A-21D-1855-08	295222	124189574	10816942	966	171721											
ROBO3	64221	broad.mit.edu	37	chr11	124745497	124745497	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggagtggcggtggccttGgggggtgatggcaacagcag	21	7	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124745497	A	A	124745497	2	1	226	1	0	0	0	0	0	0	0	1	13626	1339	47	4		4	ROBO3	11	124745497	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	555923	124745497	10261019	967	171722											
PKNOX2	63876	broad.mit.edu	37	chr11	125267998	125267998	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccatctcttaagccaggctCctaagcccagctctggagcc	8	17	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125267998	A	A	125267998	1	1	226	0	1	0	0	0	0	0	0	0	12078	870	30	3		3	PKNOX2	11	125267998	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	522501	125267998	9738518	968	171723											
FOXRED1	55572	broad.mit.edu	37	chr11	126142944	126142944	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaacatccagctctccctCttttcagccagctttctacg	6	15	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126142944	A	A	126142944	2	1	226	1	0	0	0	0	0	0	0	1	6093	900	32	3		3	FOXRED1	11	126142944	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	874946	126142944	8863572	969	171724											
NFRKB	4798	broad.mit.edu	37	chr11	129754866	129754866	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggccagggttccacaatCctttctgaccctaccccaga	9	15	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129754866	T	T	129754866	1	4	226	0	1	0	0	0	0	0	0	0	10479	870	30	4		4	NFRKB	11	129754866	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3611922	129754866	5251650	970	171725											
ADAMTS8	11095	broad.mit.edu	37	chr11	130275362	130275362	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtgctgccttgatatgGccaagggacccagtcaccac	12	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130275362	T	T	130275362	1	4	226	0	1	0	0	0	0	0	0	0	272	1218	42	3		3	ADAMTS8	11	130275362	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	520496	130275362	4731154	971	171726											
SNX19	399979	broad.mit.edu	37	chr11	130785484	130785484	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctggctcacggaacggtaCcaagataacacaaaatctcg	8	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130785484	G	G	130785484	3	3	226	1	0	0	0	0	1	0	0	0	15004	508	18	4	2671	4	SNX19	11	130785484	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	510122	130785484	4221032	972	171727											
NCAPD3	23310	broad.mit.edu	37	chr11	134063836	134063836	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcaacttaacgtttagcAgcaggtaattattgtgtgga	11	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	134063836	G	G	134063836	1	3	226	0	1	0	0	0	0	0	0	0	10301	203	7	5		5	NCAPD3	11	134063836	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3278352	134063836	942680	973	171728											
B3GAT1	27087	broad.mit.edu	37	chr11	134251899	134251899	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcactggcttctctgtcCgtgtgtgccacaccaggatc	10	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134251899	T	T	134251899	3	4	226	1	0	0	0	0	1	0	0	0	1258	652	23	4	70	4	B3GAT1	11	134251899	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	188063	134251899	754617	974	171729											
CACNA2D4	93589	broad.mit.edu	37	chr12	1974442	1974442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcgctgttcgtgcggaCctgggggccttgatatctgg	16	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1974442	A	A	1974442	1	1	226	0	1	0	0	0	0	0	0	0	2577	522	18	3		3	CACNA2D4	12	1974442	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08		1974442	131877453	975	171730											
CACNA2D4	93589	broad.mit.edu	37	chr12	2022273	2022273	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaagccatccacctcctcGatcttcagactggactccac	5	18	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2022273	T	T	2022273	2	4	226	1	0	0	0	0	0	0	0	1	2577	1048	37	3		3	CACNA2D4	12	2022273	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	47831	2022273	131829622	976	171731											
CACNA1C	775	broad.mit.edu	37	chr12	2613957	2613957	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccggggaccggcactggCcgtgctcggttgctgagtgt	18	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2613957	A	A	2613957	1	1	226	0	1	0	0	0	0	0	0	0	2566	754	26	3		3	CACNA1C	12	2613957	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	591684	2613957	131237938	977	171732											
CACNA1C	775	broad.mit.edu	37	chr12	2714981	2714981	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctccgttgtggtcctcCtacctcccctcccatcagca	8	18	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2714981	A	A	2714981	1	1	226	0	1	0	0	0	0	0	0	0	2566	696	24	2		2	CACNA1C	12	2714981	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	101024	2714981	131136914	978	171733											
FGF6	2251	broad.mit.edu	37	chr12	4554748	4554748	+	5'UTR	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagggccatccaccttgcctCtcaggcacgtggtcagaatt	10	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4554748	A	A	4554748	1	1	226	0	1	0	0	0	0	0	0	0	5913	928	32	3		3	FGF6	12	4554748	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	1839767	4554748	129297147	979	171734											
NCAPD2	9918	broad.mit.edu	37	chr12	6640523	6640523	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagatgacagaagacgagaCacccaagaaaacaactccca	8	11	0	6			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6640523	T	T	6640523	3	4	226	1	0	0	0	0	1	0	0	0	10300	478	17	4	4273	4	NCAPD2	12	6640523	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2085775	6640523	127211372	980	171735											
LPCAT3	10162	broad.mit.edu	37	chr12	7087411	7087411	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tctgcccagatgggaaagacGcataggggtgacatggtaca	14	8	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7087411	C	C	7087411	1	2	226	0	1	0	0	0	0	0	0	0	8999	1102	38	4		4	LPCAT3	12	7087411	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	446888	7087411	126764484	981	171736											
CLEC4C	170482	broad.mit.edu	37	chr12	7893886	7893886	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctatttaagataccaaGtagatagttaaagaatgcag	9	4	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7893886	T	T	7893886	1	4	226	0	1	0	0	0	0	0	0	0	3545	1044	36	3		3	CLEC4C	12	7893886	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	806475	7893886	125958009	982	171737											
A2M	2	broad.mit.edu	37	chr12	9225217	9225217	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agaacagctgctgtcctcatCtgtcctgtcctcacctgccc	7	17	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9225217	G	G	9225217	1	3	226	0	1	0	0	0	0	0	0	0	4	928	32	4		4	A2M	12	9225217	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1331331	9225217	124626678	983	171738											
CLEC1B	51266	broad.mit.edu	37	chr12	10149814	10149814	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattgacagaagcgctttgcTaattgttgcagagttcctgt	10	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10149814	A	A	10149814	3	1	226	1	0	0	0	0	1	0	0	0	3538	1519	53	5	477	5	CLEC1B	12	10149814	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	924597	10149814	123702081	984	171739											
PRB1	5542	broad.mit.edu	37	chr12	11507448	11507448	+	Intron	DEL	T	-	-													agattgagaacgaatcaggcTttacctgctattagggaggg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	11507448	-	-	11507448	6	5	226	0	1	1	0	1	0	0	0	0	12548	1624	56	0		0	PRB1	12	11507448	Intron	DEL	T	TCGA-91-6829-01A-21D-1855-08	1357634	11507448	122344447	985	171740											
ATF7IP	55729	broad.mit.edu	37	chr12	14631190	14631190	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaatttgtccatagaggAaagacttgtatttcctgatt	8	5	0	3	rs145226135	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14631190	G	G	14631190	1	3	226	0	1	0	0	0	0	0	0	0	1091	261	9	5		5	ATF7IP	12	14631190	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3123742	14631190	119220705	986	171741											
WBP11	51729	broad.mit.edu	37	chr12	14947791	14947791	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tattttacatttaatcaaatGtcacactgtttacatccata	2	8	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14947791	A	A	14947791	1	1	226	0	1	0	0	0	0	0	0	0	17385	1392	48	4		4	WBP11	12	14947791	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	316601	14947791	118904104	987	171742											
PTPRO	5800	broad.mit.edu	37	chr12	15652394	15652394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatttctttaagggaaaaaCagtatttaatcactggctgc	8	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15652394	A	A	15652394	3	1	226	1	0	0	0	0	1	0	0	0	12917	478	17	3	541	3	PTPRO	12	15652394	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	704603	15652394	118199501	988	171743											
LMO3	55885	broad.mit.edu	37	chr12	16757970	16757970	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaccgactattgtgaagccActttgggagcgggtcggagt	16	8	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16757970	T	T	16757970	1	4	226	0	1	0	0	0	0	0	0	0	8927	174	6	5		5	LMO3	12	16757970	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1105576	16757970	117093925	989	171744											
ABCC9	10060	broad.mit.edu	37	chr12	21958120	21958120	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atgatggtctacttgttggtCatcaccaaagtggaaaagag	11	6	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21958120	G	G	21958120	3	3	226	1	0	0	0	0	1	0	0	0	59	826	29	4	157	4	ABCC9	12	21958120	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	5200150	21958120	111893775	990	171745											
ITPR2	3709	broad.mit.edu	37	chr12	26596390	26596390	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacttctgcatcattgctcTagaaaaaaatatgaaaatgg	6	7	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	26596390	C	C	26596390	1	2	226	0	1	0	0	0	0	0	0	0	7991	1537	53	5		5	ITPR2	12	26596390	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	4638270	26596390	107255505	991	171746											
C12orf71	728858	broad.mit.edu	37	chr12	27235055	27235055	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacagttttgttctctctTttggtaacttgtctatccac	6	10	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27235055	C	C	27235055	3	2	226	1	0	0	0	0	1	0	0	0	1725	1841	64	5	455	5	C12orf71	12	27235055	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	638665	27235055	106616840	992	171747											
PTHLH	5744	broad.mit.edu	37	chr12	28114797	28114797	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagcatcatcctataatcCtatctgtagcagagtcaaag	7	9	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28114797	A	A	28114797	1	1	226	0	1	0	0	0	0	0	0	0	12867	696	24	2		2	PTHLH	12	28114797	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	879742	28114797	105737098	993	171748											
TMTC1	83857	broad.mit.edu	37	chr12	29667422	29667422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgagtttatacctcaaaaGctttgtcgagaaggttctgc	10	7	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29667422	T	T	29667422	3	4	226	1	0	0	0	0	1	0	0	0	16383	971	34	3	237	3	TMTC1	12	29667422	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1552625	29667422	104184473	994	171749											
C12orf35	55196	broad.mit.edu	37	chr12	32134413	32134413	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gatcccttctaattctacacGacttcctgtagcttaccaag	5	13	2	0	rs138191568	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32134413	T	T	32134413	3	4	226	1	0	0	0	0	1	0	0	0	1695	1058	37	3	526	3	C12orf35	12	32134413	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2466991	32134413	101717482	995	171750											
C12orf35	55196	broad.mit.edu	37	chr12	32137448	32137448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtttacgaaggagtacccCagtgtcagtgtaattccatc	10	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32137448	A	A	32137448	3	1	226	1	0	0	0	0	1	0	0	0	1695	595	21	2	3561	2	C12orf35	12	32137448	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3035	32137448	101714447	996	171751											
C12orf35	55196	broad.mit.edu	37	chr12	32138614	32138614	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatgcctccccaagtaaaGgatcaaaagaaattatatct	5	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32138614	C	C	32138614	3	2	226	1	0	0	0	0	1	0	0	0	1695	991	35	4	4727	4	C12orf35	12	32138614	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1166	32138614	101713281	997	171752											
ABCD2	225	broad.mit.edu	37	chr12	39994216	39994216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtattacaatcaaagcaGtaataaaatattttgggcta	7	4	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39994216	T	T	39994216	1	4	226	0	1	0	0	0	0	0	0	0	61	1044	36	3		3	ABCD2	12	39994216	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	7855602	39994216	93857679	998	171753											
NELL2	4753	broad.mit.edu	37	chr12	44902844	44902844	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatcacatttattgattggTacttacaaacaaaactgtat	5	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44902844	A	A	44902844	1	1	226	0	1	0	0	0	0	0	0	0	10429	1653	57	5		5	NELL2	12	44902844	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	4908628	44902844	88949051	999	171754											
SFRS2IP	9169	broad.mit.edu	37	chr12	46355641	46355641	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attatctccgttttcttcacCtgttaaagtaaaacagccat	4	10	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46355641	T	T	46355641	5	4	226	1	0	0	0	0	0	0	1	0	14290	695	24	4	4382	4	SFRS2IP	12	46355641	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	1452797	46355641	87496254	1000	171755											
OR8S1	341568	broad.mit.edu	37	chr12	48921694	48921694	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaacgtatctgttacaaGggggaaagaagcctccggga	12	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48921694	A	A	48921694	5	1	226	1	0	0	0	0	0	0	1	0	11340	1014	35	4	894	4	OR8S1	12	48921694	Splice_Site	SNP	G	TCGA-91-6829-01A-21D-1855-08	2566053	48921694	84930201	1001	171756											
KRT73	319101	broad.mit.edu	37	chr12	53004427	53004427	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcgccctccagcagcttgcGgtaggtggcgatctcaatat	11	13	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53004427	C	C	53004427	3	2	226	1	0	0	0	0	1	0	0	0	8557	1116	39	4	331	4	KRT73	12	53004427	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4082733	53004427	80847468	1002	171757											
KRT77	374454	broad.mit.edu	37	chr12	53091364	53091364	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgcagagcctgcatgcccCgccccccacccttacacaca	7	20	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53091364	T	T	53091364	1	4	226	0	1	0	0	0	0	0	0	0	8561	667	23	4		4	KRT77	12	53091364	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	86937	53091364	80760531	1003	171758											
KRT76	51350	broad.mit.edu	37	chr12	53166404	53166404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacctgtgggccaggtctaTgcagactgaagaagctcagt	14	9	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53166404	C	C	53166404	1	2	226	0	1	0	0	0	0	0	0	0	8560	1479	51	5		5	KRT76	12	53166404	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	75040	53166404	80685491	1004	171759											
ITGA5	3678	broad.mit.edu	37	chr12	54802718	54802718	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctccttggcagtaaccctGtcctgctgcccagctgaaat	9	15	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54802718	A	A	54802718	4	1	226	1	0	0	0	0	0	1	0	0	7949	1386	48	4	2649	4	ITGA5	12	54802718	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1636314	54802718	79049177	1005	171760											
PPP1R1A	5502	broad.mit.edu	37	chr12	54976673	54976673	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccatgccctccagcccccCttgccttcctcctctgcctt	4	24	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54976673	A	A	54976673	1	1	226	0	1	0	0	0	0	0	0	0	12468	696	24	2		2	PPP1R1A	12	54976673	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	173955	54976673	78875222	1006	171761											
MMP19	4327	broad.mit.edu	37	chr12	56236013	56236013	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccataataatgatcgccaCccatctctaaatccctggca	4	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56236013	T	T	56236013	1	4	226	0	1	0	0	0	0	0	0	0	9750	522	18	4		4	MMP19	12	56236013	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1259340	56236013	77615882	1007	171762											
PAN2	9924	broad.mit.edu	37	chr12	56720556	56720556	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcaaactcagtctcacgGgagtaggggttgaaggaagg	15	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56720556	A	A	56720556	2	1	226	1	0	0	0	0	0	0	0	1	11508	1219	43	4		4	PAN2	12	56720556	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	484543	56720556	77131339	1008	171763											
TIMELESS	8914	broad.mit.edu	37	chr12	56817009	56817009	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagattatttatttaccTgagggttcccatacccttcc	6	11	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56817009	A	A	56817009	1	1	226	0	1	0	0	0	0	0	0	0	16027	1595	55	5		5	TIMELESS	12	56817009	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	96453	56817009	77034886	1009	171764											
TAC3	6866	broad.mit.edu	37	chr12	57406598	57406598	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccactgtacctccacacActcctacctggctggacgct	6	18	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57406598	G	G	57406598	1	3	226	0	1	0	0	0	0	0	0	0	15618	174	6	5		5	TAC3	12	57406598	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	589589	57406598	76445297	1010	171765											
PTPRB	5787	broad.mit.edu	37	chr12	71016262	71016262	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagattgggatgctgcctctCgctgctgttttggctgtagt	13	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71016262	A	A	71016262	4	1	226	1	0	0	0	0	0	1	0	0	12904	893	31	3	6217	3	PTPRB	12	71016262	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	13609664	71016262	62835633	1011	171766											
LGR5	8549	broad.mit.edu	37	chr12	71953410	71953410	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaattccccactgcaattaGgacactctccaaccttaaag	5	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71953410	T	T	71953410	3	4	226	1	0	0	0	0	1	0	0	0	8829	1000	35	2	787	2	LGR5	12	71953410	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	937148	71953410	61898485	1012	171767											
TMEM19	55266	broad.mit.edu	37	chr12	72090237	72090237	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gctagtcgttggatttatccTaaccattgcaaatttcagct	7	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72090237	C	C	72090237	3	2	226	1	0	0	0	0	1	0	0	0	16236	1522	53	5	276	5	TMEM19	12	72090237	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	136827	72090237	61761658	1013	171768											
NAV3	89795	broad.mit.edu	37	chr12	78445054	78445054	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catatgagatatctgaggttAttcagagtgttgaagggccc	12	6	2	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78445054	T	T	78445054	1	4	226	0	1	0	0	0	0	0	0	0	10279	464	16	5		5	NAV3	12	78445054	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	6354817	78445054	55406841	1014	171769											
NTN4	59277	broad.mit.edu	37	chr12	96131706	96131706	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtatgcattgatcagCgtggccattgcagaagcagc	12	9	1	2	rs140109505		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	96131706	G	G	96131706	3	3	226	1	0	0	0	0	1	0	0	0	10797	768	27	4	1116	4	NTN4	12	96131706	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	17686652	96131706	37720189	1015	171770											
TMPO	7112	broad.mit.edu	37	chr12	98940096	98940096	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attattgcatgtttacactaAattttaacttgtggttgttt	6	4	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98940096	T	T	98940096	1	4	226	0	1	0	0	0	0	0	0	0	16360	29	1	5		5	TMPO	12	98940096	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2808390	98940096	34911799	1016	171771											
SLC25A3	5250	broad.mit.edu	37	chr12	98992384	98992384	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgacattgccctggctcctAtggaagctgctaaggttcga	11	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98992384	T	T	98992384	3	4	226	1	0	0	0	0	1	0	0	0	14607	449	16	5	687	5	SLC25A3	12	98992384	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	52288	98992384	34859511	1017	171772											
APAF1	317	broad.mit.edu	37	chr12	99109385	99109385	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgattctagcaaaggaacActatgattatgcctaaaatc	7	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	99109385	G	G	99109385	1	3	226	0	1	0	0	0	0	0	0	0	757	174	6	5		5	APAF1	12	99109385	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	117001	99109385	34742510	1018	171773											
MYBPC1	4604	broad.mit.edu	37	chr12	102008386	102008386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatgatttggcctccacGggtgctgtgagctgtgagct	14	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102008386	T	T	102008386	1	4	226	0	1	0	0	0	0	0	0	0	10105	1131	39	1		1	MYBPC1	12	102008386	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2899001	102008386	31843509	1019	171774											
C12orf42	374470	broad.mit.edu	37	chr12	103872158	103872158	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaaaaggtctgatggttAgcaagaattcttcttccctt	8	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103872158	T	T	103872158	3	4	226	1	0	0	0	0	1	0	0	0	1701	420	15	5	1055	5	C12orf42	12	103872158	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	1863772	103872158	29979737	1020	171775											
STAB2	55576	broad.mit.edu	37	chr12	104118966	104118966	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttaagagcttggtgaaaTgtaaagcgctataaaaatat	8	3	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104118966	C	C	104118966	1	2	226	0	1	0	0	0	0	0	0	0	15356	1479	51	5		5	STAB2	12	104118966	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	246808	104118966	29732929	1021	171776											
GLT8D2	83468	broad.mit.edu	37	chr12	104393245	104393245	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaccatcgggttgaattccAcgattttaaagtttatttct	8	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104393245	G	G	104393245	3	3	226	1	0	0	0	0	1	0	0	0	6534	159	6	5	741	5	GLT8D2	12	104393245	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	274279	104393245	29458650	1022	171777											
TMEM119	338773	broad.mit.edu	37	chr12	108985202	108985202	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggattggcaccacagggaggCcaaggagggagtgtcaggaa	18	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108985202	A	A	108985202	1	1	226	0	1	0	0	0	0	0	0	0	16155	754	26	3		3	TMEM119	12	108985202	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	4591957	108985202	24866693	1023	171778											
UNG	7374	broad.mit.edu	37	chr12	109547647	109547647	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagaagcggcaccatgTactacagacggctcatccct	8	13	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	109547647	G	G	109547647	3	3	226	1	0	0	0	0	1	0	0	0	17125	1638	57	5	946	5	UNG	12	109547647	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	562445	109547647	24304248	1024	171779											
GIT2	9815	broad.mit.edu	37	chr12	110390319	110390319	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttccgtcgggtgtcatacccCtcctgctgcagcttcgagtc	10	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110390319	G	G	110390319	1	3	226	0	1	0	0	0	0	0	0	0	6461	696	24	4		4	GIT2	12	110390319	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	842672	110390319	23461576	1025	171780											
OAS3	4940	broad.mit.edu	37	chr12	113384832	113384832	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcctgtcccggggccagGgggagataattgacaaggac	14	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	113384832	C	C	113384832	1	2	226	0	1	0	0	0	0	0	0	0	10896	1247	43	4		4	OAS3	12	113384832	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2994513	113384832	20467063	1026	171781											
RASAL1	8437	broad.mit.edu	37	chr12	113546081	113546081	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaacccacttctcagctgCgtaaactgaggcagcaagga	9	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113546081	T	T	113546081	1	4	226	0	1	0	0	0	0	0	0	0	13171	783	27	4		4	RASAL1	12	113546081	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	161249	113546081	20305814	1027	171782											
CCDC60	160777	broad.mit.edu	37	chr12	119961410	119961410	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccatgcagagcaccttGgggctaaggggggccagagt	15	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119961410	T	T	119961410	1	4	226	0	1	0	0	0	0	0	0	0	2859	1363	47	2		2	CCDC60	12	119961410	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6415329	119961410	13890485	1028	171783											
CCDC60	160777	broad.mit.edu	37	chr12	119978416	119978416	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccactatgtctgcctcaCagtttgtgcgagaacacatc	8	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119978416	A	A	119978416	1	1	226	0	1	0	0	0	0	0	0	0	2859	493	17	3		3	CCDC60	12	119978416	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	17006	119978416	13873479	1029	171784											
CIT	11113	broad.mit.edu	37	chr12	120204875	120204875	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagcaaggccagggaagatCagaaaatgtctttactttaa	11	6	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120204875	A	A	120204875	1	1	226	0	1	0	0	0	0	0	0	0	3469	841	29	3		3	CIT	12	120204875	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	226459	120204875	13647020	1030	171785											
CLIP1	6249	broad.mit.edu	37	chr12	122763329	122763329	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagaagcactgggcaggCgccctttacctgaggagctg	14	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122763329	A	A	122763329	1	1	226	0	1	0	0	0	0	0	0	0	3564	783	27	3		3	CLIP1	12	122763329	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2558454	122763329	11088566	1031	171786											
KNTC1	9735	broad.mit.edu	37	chr12	123103166	123103166	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcccttctaatagatatctCtaatgagtaattcctttttg	4	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123103166	T	T	123103166	1	4	226	0	1	0	0	0	0	0	0	0	8499	928	32	4		4	KNTC1	12	123103166	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	339837	123103166	10748729	1032	171787											
RILPL2	196383	broad.mit.edu	37	chr12	123900681	123900681	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagtctcagacatgcctGggcagcatagtgagacccca	12	12	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123900681	A	A	123900681	1	1	226	0	1	0	0	0	0	0	0	0	13471	1363	47	4		4	RILPL2	12	123900681	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	797515	123900681	9951214	1033	171788											
RIMBP2	23504	broad.mit.edu	37	chr12	130907094	130907094	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cacccgtcctgcagaggctgGgttccctaaaatctaaagac	9	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130907094	C	C	130907094	3	2	226	1	0	0	0	0	1	0	0	0	13472	1232	43	4	812	4	RIMBP2	12	130907094	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	7006413	130907094	2944801	1034	171789											
RIMBP2	23504	broad.mit.edu	37	chr12	130963483	130963483	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaggtcaatttcctgctGcttggcactgagaacagcca	10	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130963483	T	T	130963483	3	4	226	1	0	0	0	0	1	0	0	0	13472	1328	46	3	3150	3	RIMBP2	12	130963483	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	56389	130963483	2888412	1035	171790											
GPR133	283383	broad.mit.edu	37	chr12	131466608	131466608	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcctccttcagccccccaGgtgagtgacagcatcggtcc	11	16	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131466608	C	C	131466608	3	2	226	1	0	0	0	0	1	0	0	0	6708	1014	35	4	508	4	GPR133	12	131466608	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	503125	131466608	2385287	1036	171791											
GPR133	283383	broad.mit.edu	37	chr12	131490582	131490582	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgaacaacatctggcccGcccacaccaagtgagtctcg	8	16	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131490582	T	T	131490582	3	4	226	1	0	0	0	0	1	0	0	0	6708	1087	38	3	1367	3	GPR133	12	131490582	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	23974	131490582	2361313	1037	171792											
CDK8	1024	broad.mit.edu	37	chr13	26957020	26957020	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taaaaattggtatgttatatCtttgctaagtcacagtgtag	8	4	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	26957020	G	G	26957020	1	3	226	0	1	0	0	0	0	0	0	0	3180	928	32	4		4	CDK8	13	26957020	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08		26957020	88212858	1038	171793											
FLT3	2322	broad.mit.edu	37	chr13	28623625	28623625	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atacaaaagcaaacagaatcCgtatcatagttctgtttgtt	6	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28623625	T	T	28623625	3	4	226	1	0	0	0	0	1	0	0	0	6000	652	23	4	2117	4	FLT3	13	28623625	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1666605	28623625	86546253	1039	171794											
FRY	10129	broad.mit.edu	37	chr13	32811922	32811922	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgagcagactactggcaCatatgccactcgataaggct	10	10	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32811922	T	T	32811922	3	4	226	1	0	0	0	0	1	0	0	0	6123	478	17	4	6391	4	FRY	13	32811922	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4188297	32811922	82357956	1040	171795											
POSTN	10631	broad.mit.edu	37	chr13	38172919	38172919	+	5'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aactggcagtgggctttggaGagctcagaatttatatacat	11	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38172919	A	A	38172919	1	1	226	0	1	0	0	0	0	0	0	0	12354	957	33	4		4	POSTN	13	38172919	5'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	5360997	38172919	76996959	1041	171796											
TRPC4	7223	broad.mit.edu	37	chr13	38225534	38225534	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtaggcagagtacctccTtcttcaaaataactcatcca	7	11	3	1	rs114508439	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38225534	G	G	38225534	3	3	226	1	0	0	0	0	1	0	0	0	16705	1606	56	5	1017	5	TRPC4	13	38225534	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	52615	38225534	76944344	1042	171797											
FREM2	341640	broad.mit.edu	37	chr13	39438599	39438599	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagagacatatccttaccaGtacagcttgtccatcagagg	10	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39438599	C	C	39438599	3	2	226	1	0	0	0	0	1	0	0	0	6105	1020	36	4	7901	4	FREM2	13	39438599	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1213065	39438599	75731279	1043	171798											
STOML3	161003	broad.mit.edu	37	chr13	39550731	39550731	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacggaatacaacagcacGttcatactccttaatgatct	6	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39550731	T	T	39550731	3	4	226	1	0	0	0	0	1	0	0	0	15433	1145	40	3	720	3	STOML3	13	39550731	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	112132	39550731	75619147	1044	171799											
C13orf23	80209	broad.mit.edu	37	chr13	39586281	39586281	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcttgcaaggatgattgtGaaggattctgaggaaaccca	11	6	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39586281	T	T	39586281	4	4	226	1	0	0	0	0	0	1	0	0	1734	1294	45	3	191	3	C13orf23	13	39586281	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	35550	39586281	75583597	1045	171800											
COG3	83548	broad.mit.edu	37	chr13	46083976	46083976	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtatctttactgtgaattGctcgttctttcacttgaaat	7	7	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46083976	A	A	46083976	1	1	226	0	1	0	0	0	0	0	0	0	3691	1334	46	4		4	COG3	13	46083976	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6497695	46083976	69085902	1046	171801											
COG3	83548	broad.mit.edu	37	chr13	46085876	46085876	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgtcaaatgccacaggctGattattctcttttattccac	5	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46085876	T	T	46085876	1	4	226	0	1	0	0	0	0	0	0	0	3691	1305	45	3		3	COG3	13	46085876	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1900	46085876	69084002	1047	171802											
RB1	5925	broad.mit.edu	37	chr13	48934152	48934152	+	Splice_Site	DEL	G	-	-													aaatgtacatttttttttcaGgggaagtattacaaatggaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48934152	-	-	48934152	8	5	226	1	0	1	0	1	0	0	1	0	13206	1014	35	0	633	0	RB1	13	48934152	Splice_Site	DEL	G	TCGA-91-6829-01A-21D-1855-08	2848276	48934152	66235726	1048	171803											
PCDH17	27253	broad.mit.edu	37	chr13	58207235	58207235	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggactggacgttaagtcCcgcggcgacggcaccaagtt	13	11	0	0	rs139267359		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58207235	T	T	58207235	2	4	226	1	0	0	0	0	0	0	0	1	11606	610	22	4		4	PCDH17	13	58207235	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	9273083	58207235	56962643	1049	171804											
DACH1	1602	broad.mit.edu	37	chr13	72134027	72134027	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgatgtgatgatgggtgacTgccaggccttctcccctcct	12	13	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72134027	A	A	72134027	3	1	226	1	0	0	0	0	1	0	0	0	4253	1580	55	5	788	5	DACH1	13	72134027	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	13926792	72134027	43035851	1050	171805											
PIBF1	10464	broad.mit.edu	37	chr13	73468017	73468017	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgagcgtgttcaacttcTgcaagaggaaacagcaagaa	11	7	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73468017	G	G	73468017	3	3	226	1	0	0	0	0	1	0	0	0	11974	1580	55	5	1456	5	PIBF1	13	73468017	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1333990	73468017	41701861	1051	171806											
EDNRB	1910	broad.mit.edu	37	chr13	78473904	78473904	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactataagataatttactAaatctgtctggatagatata	5	4	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78473904	C	C	78473904	1	2	226	0	1	0	0	0	0	0	0	0	4960	377	13	5		5	EDNRB	13	78473904	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	5005887	78473904	36695974	1052	171807											
DZIP1	22873	broad.mit.edu	37	chr13	96238287	96238287	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttgtaattcttcttttttGataaacatctcagggacatt	5	7	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96238287	C	C	96238287	3	2	226	1	0	0	0	0	1	0	0	0	4903	1280	45	4	293	4	DZIP1	13	96238287	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	17764383	96238287	18931591	1053	171808											
IPO5	3843	broad.mit.edu	37	chr13	98622116	98622117	+	Intron	DNP	CC	AG	AG													cacctggggaaaagtcacttCctgttttgttttttttaaaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	98622117	AG	AG	98622116	1	1	226	0	1	0	0	0	0	0	0	0	7866	870	30	3		3	IPO5	13	98622116	Intron	DNP	CC	TCGA-91-6829-01A-21D-1855-08	2383829	98622116	16547762	1054	171809											
SLC10A2	6555	broad.mit.edu	37	chr13	103701549	103701550	+	Intron	INS	-	A	A													tatttgtacaattcaccaccINSaggaacggggagttttaaaa							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103701550	A	A	103701549	6	5	226	0	1	1	1	0	0	0	0	0	14487	609	21	0		0	SLC10A2	13	103701549	Intron	INS	-	TCGA-91-6829-01A-21D-1855-08	5079433	103701549	11468329	1055	171810											
C13orf28	122258	broad.mit.edu	37	chr13	113088847	113088847	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagcgcacagaggaggaGccaaggcagtcagtgaggcc	16	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113088847	T	T	113088847	3	4	226	1	0	0	0	0	1	0	0	0	1737	971	34	3	598	3	C13orf28	13	113088847	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	9387298	113088847	2081031	1056	171811											
MCF2L	23263	broad.mit.edu	37	chr13	113744165	113744165	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctttgcagagcattcagGgccccttgctcccctcttaa	8	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113744165	T	T	113744165	1	4	226	0	1	0	0	0	0	0	0	0	9472	1247	43	2		2	MCF2L	13	113744165	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	655318	113744165	1425713	1057	171812											
OR4N2	390429	broad.mit.edu	37	chr14	20296000	20296000	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatctgccggcctctgcaCtatcctactgtcatgaaccc	7	17	3	1	rs2873667		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20296000	A	A	20296000	3	1	226	1	0	0	0	0	1	0	0	0	11171	564	20	3	395	3	OR4N2	14	20296000	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08		20296000	87053540	1058	171813											
OR4K5	79317	broad.mit.edu	37	chr14	20389628	20389628	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaaaccccattatttataCactaaggaatagggatatga	6	8	0	1	rs151012539	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20389628	A	A	20389628	3	1	226	1	0	0	0	0	1	0	0	0	11167	478	17	3	865	3	OR4K5	14	20389628	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	93628	20389628	86959912	1059	171814											
OR4K5	79317	broad.mit.edu	37	chr14	20389640	20389640	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tatttatacactaaggaataGggatatgaaggctgccgtaa	10	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20389640	C	C	20389640	3	2	226	1	0	0	0	0	1	0	0	0	11167	1000	35	4	877	4	OR4K5	14	20389640	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	12	20389640	86959900	1060	171815											
SUPT16H	11198	broad.mit.edu	37	chr14	21840301	21840301	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatagacaaaaataacatgTctgaaattaactccaaggta	5	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21840301	C	C	21840301	1	2	226	0	1	0	0	0	0	0	0	0	15514	1682	58	5		5	SUPT16H	14	21840301	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1450661	21840301	85509239	1061	171816											
OR10G2	26534	broad.mit.edu	37	chr14	22102704	22102704	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagccacacagccaccaaAcgggatagccttgatggaag	11	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22102704	T	T	22102704	3	4	226	1	0	0	0	0	1	0	0	0	10993	43	2	5	640	5	OR10G2	14	22102704	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	262403	22102704	85246836	1062	171817											
SLC7A7	9056	broad.mit.edu	37	chr14	23245231	23245231	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccccagattccccttattAggtattccaacctttcttcc	4	16	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23245231	G	G	23245231	1	3	226	0	1	0	0	0	0	0	0	0	14817	435	15	5		5	SLC7A7	14	23245231	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1142527	23245231	84104309	1063	171818											
CMTM5	116173	broad.mit.edu	37	chr14	23848599	23848599	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggccagccagggtgagtGcctgtgctctgtggagagga	19	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23848599	T	T	23848599	1	4	226	0	1	0	0	0	0	0	0	0	3618	1334	46	3		3	CMTM5	14	23848599	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	603368	23848599	83500941	1064	171819											
MYH7	4625	broad.mit.edu	37	chr14	23884905	23884905	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gctccgccagcttccgggacCgctctgtctgctccaccacg	10	19	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23884905	G	G	23884905	3	3	226	1	0	0	0	0	1	0	0	0	10133	652	23	4	741	4	MYH7	14	23884905	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	36306	23884905	83464635	1065	171820											
MYH7	4625	broad.mit.edu	37	chr14	23894191	23894191	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggccaattcttgaccccCatgaaggcccgaatgttcca	9	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23894191	A	A	23894191	3	1	226	1	0	0	0	0	1	0	0	0	10133	594	21	2	3417	2	MYH7	14	23894191	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	9286	23894191	83455349	1066	171821											
STXBP6	29091	broad.mit.edu	37	chr14	25326512	25326512	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggaatatgaataaatatGtgtgcctttggtcaggggtg	15	3	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25326512	C	C	25326512	1	2	226	0	1	0	0	0	0	0	0	0	15476	1392	48	4		4	STXBP6	14	25326512	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1432321	25326512	82023028	1067	171822											
NOVA1	4857	broad.mit.edu	37	chr14	26918112	26918112	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccattacagccttcacagTagcacctcccttccctatta	3	17	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26918112	A	A	26918112	3	1	226	1	0	0	0	0	1	0	0	0	10649	1638	57	5	950	5	NOVA1	14	26918112	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1591600	26918112	80431428	1068	171823											
ARHGAP5	394	broad.mit.edu	37	chr14	32562038	32562039	+	Missense_Mutation	DNP	GG	TT	TT													aggcaccaagggcagcagttGgcaaacaagttgcaatgtcc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	32562039	TT	TT	32562038	3	4	226	1	0	0	0	0	1	0	0	0	888	1339	47	2	2165	2	ARHGAP5	14	32562038	Missense_Mutation	DNP	GG	TCGA-91-6829-01A-21D-1855-08	5643926	32562038	74787502	1069	171824											
AKAP6	9472	broad.mit.edu	37	chr14	33046291	33046291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaactaacatgcctttcttGcccctttttttccccttttc	2	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33046291	T	T	33046291	1	4	226	0	1	0	0	0	0	0	0	0	455	1334	46	3		3	AKAP6	14	33046291	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	484253	33046291	74303249	1070	171825											
EAPP	55837	broad.mit.edu	37	chr14	34998672	34998672	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttcttcttttttttcttgGtcacctgtactaattttgaa	5	7	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34998672	A	A	34998672	3	1	226	1	0	0	0	0	1	0	0	0	4917	1261	44	4	507	4	EAPP	14	34998672	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1952381	34998672	72350868	1071	171826											
KIAA0391	9692	broad.mit.edu	37	chr14	35739454	35739454	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtattgcttaccagctaaGgactttgaggtggttcttaa	10	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35739454	T	T	35739454	1	4	226	0	1	0	0	0	0	0	0	0	8242	1015	35	2		2	KIAA0391	14	35739454	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	740782	35739454	71610086	1072	171827											
PSMA6	5687	broad.mit.edu	37	chr14	35777229	35777229	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaggctattaaccagggtGgccttacatcagtagctgtc	10	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35777229	A	A	35777229	3	1	226	1	0	0	0	0	1	0	0	0	12777	1348	47	4	112	4	PSMA6	14	35777229	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	37775	35777229	71572311	1073	171828											
SEC23A	10484	broad.mit.edu	37	chr14	39555172	39555172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggtgagagttcgataaaCaaatttcactttcctaaaaa	7	6	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39555172	A	A	39555172	1	1	226	0	1	0	0	0	0	0	0	0	14104	493	17	3		3	SEC23A	14	39555172	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3777943	39555172	67794368	1074	171829											
CTAGE5	4253	broad.mit.edu	37	chr14	39764020	39764020	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctgcctctgctgttaatAttggcatggttttgcctttg	10	8	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39764020	G	G	39764020	1	3	226	0	1	0	0	0	0	0	0	0	4028	464	16	5		5	CTAGE5	14	39764020	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	208848	39764020	67585520	1075	171830											
CTAGE5	4253	broad.mit.edu	37	chr14	39783900	39783900	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagagtatgttctgtcatttCatgttatatgttaatagtag	9	3	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39783900	T	T	39783900	1	4	226	0	1	0	0	0	0	0	0	0	4028	841	29	4		4	CTAGE5	14	39783900	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	19880	39783900	67565640	1076	171831											
FSCB	84075	broad.mit.edu	37	chr14	44974165	44974165	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacttcagcaggggcctcctCagctggtggaggctgaactt	13	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44974165	T	T	44974165	3	4	226	1	0	0	0	0	1	0	0	0	6126	835	29	4	455	4	FSCB	14	44974165	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	5190265	44974165	62375375	1077	171832											
FAM179B	23116	broad.mit.edu	37	chr14	45540896	45540896	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactctttaaacatgtgtctCtgtgttctttttgtttagac	6	7	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45540896	A	A	45540896	1	1	226	0	1	0	0	0	0	0	0	0	5551	928	32	3		3	FAM179B	14	45540896	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	566731	45540896	61808644	1078	171833											
FANCM	57697	broad.mit.edu	37	chr14	45623018	45623018	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atgatgattatgatcatttgGattatattataaatgttaca	6	2	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45623018	T	T	45623018	1	4	226	0	1	0	0	0	0	0	0	0	5728	1189	41	3		3	FANCM	14	45623018	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	82122	45623018	61726522	1079	171834											
FANCM	57697	broad.mit.edu	37	chr14	45668130	45668130	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttcatctgtgaaaaggatGgctaacaggtatgtctgttg	11	5	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45668130	C	C	45668130	3	2	226	1	0	0	0	0	1	0	0	0	5728	1348	47	4	6086	4	FANCM	14	45668130	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	45112	45668130	61681410	1080	171835											
MDGA2	161357	broad.mit.edu	37	chr14	47669808	47669808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccgtgagtcttgaagacCtctgtatatttgtcaatttt	8	7	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47669808	A	A	47669808	1	1	226	0	1	0	0	0	0	0	0	0	9500	696	24	2		2	MDGA2	14	47669808	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2001678	47669808	59679732	1081	171836											
MDGA2	161357	broad.mit.edu	37	chr14	47669822	47669822	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagacctctgtatatttgtCaattttcttctccacgttct	5	10	5	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47669822	A	A	47669822	1	1	226	0	1	0	0	0	0	0	0	0	9500	841	29	3		3	MDGA2	14	47669822	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	14	47669822	59679718	1082	171837											
PELI2	57161	broad.mit.edu	37	chr14	56755250	56755250	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccagatcacacagagcacCatatccaggttcgcctgcag	9	15	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56755250	T	T	56755250	2	4	226	1	0	0	0	0	0	0	0	1	11816	581	21	4		4	PELI2	14	56755250	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	9085428	56755250	50594290	1083	171838											
PELI2	57161	broad.mit.edu	37	chr14	56763925	56763925	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttattaacaggttactGtgaagattttgccactaact	7	7	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56763925	T	T	56763925	1	4	226	0	1	0	0	0	0	0	0	0	11816	1392	48	3		3	PELI2	14	56763925	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	8675	56763925	50585615	1084	171839											
PPM1A	5494	broad.mit.edu	37	chr14	60712664	60712664	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaagagaagggcaaagaaGgcaaaaagagaagagaagaa	16	2	0	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60712664	A	A	60712664	1	1	226	0	1	0	0	0	0	0	0	0	12436	991	35	4		4	PPM1A	14	60712664	5'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	3948739	60712664	46636876	1085	171840											
SLC38A6	145389	broad.mit.edu	37	chr14	61451635	61451635	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcatacatttttattagAtagggtgatcggaatggaga	12	3	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	61451635	G	G	61451635	1	3	226	0	1	0	0	0	0	0	0	0	14722	348	12	5		5	SLC38A6	14	61451635	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	738971	61451635	45897905	1086	171841											
FUT8	2530	broad.mit.edu	37	chr14	66082969	66082969	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctgaggaggaggattgaAaatggagctaaagagctctg	14	5	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	66082969	C	C	66082969	3	2	226	1	0	0	0	0	1	0	0	0	6170	11	1	5	370	5	FUT8	14	66082969	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	4631334	66082969	41266571	1087	171842											
ZFYVE26	23503	broad.mit.edu	37	chr14	68217815	68217815	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatcaggccctccagctccTgtgcagaacagaaacagcac	10	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68217815	A	A	68217815	5	1	226	1	0	0	0	0	0	0	1	0	17794	1594	55	5	257	5	ZFYVE26	14	68217815	Splice_Site	SNP	T	TCGA-91-6829-01A-21D-1855-08	2134846	68217815	39131725	1088	171843											
ACTN1	87	broad.mit.edu	37	chr14	69375984	69375984	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctagtcctgctcttttcCcaccccacctgccagggacc	7	19	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69375984	A	A	69375984	1	1	226	0	1	0	0	0	0	0	0	0	204	638	22	2		2	ACTN1	14	69375984	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1158169	69375984	37973556	1089	171844											
SLC8A3	6547	broad.mit.edu	37	chr14	70527359	70527359	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaaggcagagatgataccGaaacagggtgagagcgagaa	15	5	0	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70527359	T	T	70527359	1	4	226	0	1	0	0	0	0	0	0	0	14822	1073	37	3		3	SLC8A3	14	70527359	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1151375	70527359	36822181	1090	171845											
DPF3	8110	broad.mit.edu	37	chr14	73220132	73220132	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaggctggaaggggccttGgaaactaccctgactaaccc	11	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73220132	A	A	73220132	1	1	226	0	1	0	0	0	0	0	0	0	4758	1363	47	4		4	DPF3	14	73220132	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2692773	73220132	34129408	1091	171846											
ZFYVE1	53349	broad.mit.edu	37	chr14	73464462	73464462	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgctattgcagaccaaaTagctgcctccttgtacccat	7	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73464462	C	C	73464462	1	2	226	0	1	0	0	0	0	0	0	0	17789	1421	49	5		5	ZFYVE1	14	73464462	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	244330	73464462	33885078	1092	171847											
PSEN1	5663	broad.mit.edu	37	chr14	73686110	73686110	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagtcaagattcccggctGgacttttgcagcttccttcc	8	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73686110	T	T	73686110	1	4	226	0	1	0	0	0	0	0	0	0	12756	1363	47	2		2	PSEN1	14	73686110	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	221648	73686110	33663430	1093	171848											
TSHR	7253	broad.mit.edu	37	chr14	81609173	81609173	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	catgttgcccaggctggtctCaaactcctaggctcaagcaa	9	13	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	81609173	A	A	81609173	1	1	226	0	1	0	0	0	0	0	0	0	16747	841	29	3		3	TSHR	14	81609173	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	7923063	81609173	25740367	1094	171849											
FLRT2	23768	broad.mit.edu	37	chr14	86089577	86089577	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaaaggggcgctacacCtcccagaagtggaaatacaa	9	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86089577	A	A	86089577	2	1	226	1	0	0	0	0	0	0	0	1	5997	668	24	2		2	FLRT2	14	86089577	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	4480404	86089577	21259963	1095	171850											
SERPINA9	327657	broad.mit.edu	37	chr14	94935730	94935730	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacagcctcttgacattgcCcaagaaatttgcctgcagct	7	12	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94935730	A	A	94935730	3	1	226	1	0	0	0	0	1	0	0	0	14208	623	22	2	821	2	SERPINA9	14	94935730	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	8846153	94935730	12413810	1096	171851											
DYNC1H1	1778	broad.mit.edu	37	chr14	102472468	102472468	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accgctgctatttgacaatgAcacaagccttggaggccagg	11	11	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102472468	T	T	102472468	3	4	226	1	0	0	0	0	1	0	0	0	4881	275	10	5	5783	5	DYNC1H1	14	102472468	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	7536738	102472468	4877072	1097	171852											
RCOR1	23186	broad.mit.edu	37	chr14	103187709	103187709	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagagcagcttctcgccgTacaaggtagggggaagttct	14	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103187709	G	G	103187709	3	3	226	1	0	0	0	0	1	0	0	0	13290	1638	57	5	1213	5	RCOR1	14	103187709	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	715241	103187709	4161831	1098	171853											
CDC42BPB	9578	broad.mit.edu	37	chr14	103442278	103442278	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctccgaatcctcctctcGtaagcttccatctgcaggct	7	16	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103442278	A	A	103442278	2	1	226	1	0	0	0	0	0	0	0	1	3103	1140	40	4		4	CDC42BPB	14	103442278	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	254569	103442278	3907262	1099	171854											
AHNAK2	113146	broad.mit.edu	37	chr14	105405700	105405700	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaatctgggatggcataTcagtacttgaagctttcaat	9	7	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	105405700	C	C	105405700	3	2	226	1	0	0	0	0	1	0	0	0	415	1435	50	5	1303	5	AHNAK2	14	105405700	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1963422	105405700	1943840	1100	171855											
AHNAK2	113146	broad.mit.edu	37	chr14	105418921	105418921	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcagagacacctcgccaTcgggggctgtcacttccgcc	13	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105418921	A	A	105418921	3	1	226	1	0	0	0	0	1	0	0	0	415	1435	50	5	14524	5	AHNAK2	14	105418921	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	13221	105418921	1930619	1101	171856											
OR4N4	283694	broad.mit.edu	37	chr15	22332696	22332696	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagagcatctctttttcAggatgcctggcccagatcta	10	11	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22332696	C	C	22332696	1	2	226	0	1	0	0	0	0	0	0	0	11172	203	7	5		5	OR4N4	15	22332696	5'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08		22332696	80198696	1102	171857											
OR4M2	390538	broad.mit.edu	37	chr15	22368867	22368867	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taatttcttttgatggatgcAttgcacagctcttcttctta	6	8	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22368867	T	T	22368867	3	4	226	1	0	0	0	0	1	0	0	0	11170	217	8	5	294	5	OR4M2	15	22368867	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	36171	22368867	80162525	1103	171858											
MKRN3	7681	broad.mit.edu	37	chr15	23812450	23812450	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatatttcaatttgattctGtagcatcgtgctgtggcatg	10	6	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23812450	T	T	23812450	2	4	226	1	0	0	0	0	0	0	0	1	9701	1364	48	3		3	MKRN3	15	23812450	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	1443583	23812450	78718942	1104	171859											
SNRPN	6638	broad.mit.edu	37	chr15	25155033	25155033	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggcacagcggcgctgGggcagggagaaggggaaagc	20	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25155033	T	T	25155033	1	4	226	0	1	0	0	0	0	0	0	0	14984	1247	43	2		2	SNRPN	15	25155033	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1342583	25155033	77376359	1105	171860											
SNRPN	6638	broad.mit.edu	37	chr15	25213249	25213249	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttagagctaatgcagcaaTgatcaagaataaagaatcat	9	5	2	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25213249	A	A	25213249	1	1	226	0	1	0	0	0	0	0	0	0	14984	1479	51	5		5	SNRPN	15	25213249	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	58216	25213249	77318143	1106	171861											
SNRPN	6638	broad.mit.edu	37	chr15	25213288	25213288	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaagaatggggtgttggGggttctcttaattatcagtg	13	3	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25213288	T	T	25213288	1	4	226	0	1	0	0	0	0	0	0	0	14984	1247	43	2		2	SNRPN	15	25213288	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	39	25213288	77318104	1107	171862											
HERC2	8924	broad.mit.edu	37	chr15	28375478	28375478	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggaagcatggaaattatgGggcaaggtgatctcactgac	13	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28375478	C	C	28375478	1	2	226	0	1	0	0	0	0	0	0	0	7125	1247	43	4		4	HERC2	15	28375478	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3162190	28375478	74155914	1108	171863											
HERC2	8924	broad.mit.edu	37	chr15	28413456	28413456	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaatctaagcgggaggcacaGaaacagcctaaactaaatga	9	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28413456	A	A	28413456	1	1	226	0	1	0	0	0	0	0	0	0	7125	957	33	4		4	HERC2	15	28413456	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	37978	28413456	74117936	1109	171864											
FAM189A1	23359	broad.mit.edu	37	chr15	29527392	29527392	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctacctgaatcttttcaaAgtgtcataaaacagatagtt	5	9	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29527392	G	G	29527392	1	3	226	0	1	0	0	0	0	0	0	0	5562	87	3	5		5	FAM189A1	15	29527392	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1113936	29527392	73004000	1110	171865											
OTUD7A	161725	broad.mit.edu	37	chr15	32058769	32058769	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcacacttgtgctgccttgtCcaacatttggtttcatggta	9	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32058769	A	A	32058769	1	1	226	0	1	0	0	0	0	0	0	0	11412	870	30	3		3	OTUD7A	15	32058769	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2531377	32058769	70472623	1111	171866											
RYR3	6263	broad.mit.edu	37	chr15	34023715	34023715	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcgcttgcactaaataGgtatatatgttctgctgtgc	11	8	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34023715	T	T	34023715	3	4	226	1	0	0	0	0	1	0	0	0	13881	1000	35	2	7434	2	RYR3	15	34023715	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1964946	34023715	68507677	1112	171867											
GPR176	11245	broad.mit.edu	37	chr15	40093898	40093898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccctatcaagcacttgCggacagatttgttcacagta	10	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40093898	A	A	40093898	3	1	226	1	0	0	0	0	1	0	0	0	6738	768	27	3	568	3	GPR176	15	40093898	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	6070183	40093898	62437494	1113	171868											
MGA	23269	broad.mit.edu	37	chr15	41988781	41988781	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgccttctgcttaggcaagGaatcagaaaatggtcttaga	10	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41988781	T	T	41988781	4	4	226	1	0	0	0	0	0	1	0	0	9633	1175	41	3	1579	3	MGA	15	41988781	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1894883	41988781	60542611	1114	171869											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	chr15	42132588	42132588	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggaaggtggcagctggGgctctgcctctggcccccac	17	13	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42132588	A	A	42132588	1	1	226	0	1	0	0	0	0	0	0	0	8025	1247	43	4		4	JMJD7-PLA2G4B	15	42132588	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	143807	42132588	60398804	1115	171870											
TGM5	9333	broad.mit.edu	37	chr15	43527551	43527551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggggaatcgtgccagagGggacagtagaaatgatggtg	19	4	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43527551	T	T	43527551	1	4	226	0	1	0	0	0	0	0	0	0	15956	1247	43	2		2	TGM5	15	43527551	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1394963	43527551	59003841	1116	171871											
FRMD5	84978	broad.mit.edu	37	chr15	44198064	44198064	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcagcaattttcctttcCagcttctctgaatgtttagg	6	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44198064	T	T	44198064	2	4	226	1	0	0	0	0	0	0	0	1	6113	581	21	4		4	FRMD5	15	44198064	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	670513	44198064	58333328	1117	171872											
DUT	1854	broad.mit.edu	37	chr15	48624414	48624414	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtgcgctctcctcttccCccggtggtctcctcgctcgc	9	19	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48624414	A	A	48624414	1	1	226	0	1	0	0	0	0	0	0	0	4873	638	22	2		2	DUT	15	48624414	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4426350	48624414	53906978	1118	171873											
CEP152	22995	broad.mit.edu	37	chr15	49085535	49085535	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taccttttattattacaagcTggtgattcagatatcgaatt	6	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49085535	C	C	49085535	3	2	226	1	0	0	0	0	1	0	0	0	3278	1580	55	5	4229	5	CEP152	15	49085535	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	461121	49085535	53445857	1119	171874											
SHC4	399694	broad.mit.edu	37	chr15	49135801	49135801	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attacctgtagtgattagtaGtgatcaatacattatgtttt	7	4	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49135801	C	C	49135801	1	2	226	0	1	0	0	0	0	0	0	0	14386	1044	36	4		4	SHC4	15	49135801	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	50266	49135801	53395591	1120	171875											
RFX7	64864	broad.mit.edu	37	chr15	56390279	56390279	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atactatttaattatattacCggaatgggactagggacagc	9	6	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56390279	A	A	56390279	2	1	226	1	0	0	0	0	0	0	0	1	13376	666	23	1		1	RFX7	15	56390279	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	7254478	56390279	46141113	1121	171876											
PPIB	5479	broad.mit.edu	37	chr15	64454073	64454074	+	Intron	DNP	CC	AA	AA													ccactgtgcctggtcagggcCccattactcttaagaaaggg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	64454074	AA	AA	64454073	1	1	226	0	1	0	0	0	0	0	0	0	12420	638	22	2		2	PPIB	15	64454073	Intron	DNP	CC	TCGA-91-6829-01A-21D-1855-08	8063794	64454073	38077319	1122	171877											
ZWILCH	55055	broad.mit.edu	37	chr15	66832443	66832443	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctttccttagtgagaagCcacagaaatggagagtggaa	11	6	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66832443	T	T	66832443	3	4	226	1	0	0	0	0	1	0	0	0	18377	739	26	4	1648	4	ZWILCH	15	66832443	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2378370	66832443	35698949	1123	171878											
SMAD3	4088	broad.mit.edu	37	chr15	67473647	67473647	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctactacgagctgaaccagCgcgtcggggagacattccac	11	14	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67473647	T	T	67473647	3	4	226	1	0	0	0	0	1	0	0	0	14873	768	27	4	827	4	SMAD3	15	67473647	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	641204	67473647	35057745	1124	171879											
CORO2B	10391	broad.mit.edu	37	chr15	69006824	69006824	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagtagttgccatcctaagAggccttcctgggatttgggg	13	8	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69006824	T	T	69006824	1	4	226	0	1	0	0	0	0	0	0	0	3789	319	11	5		5	CORO2B	15	69006824	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1533177	69006824	33524568	1125	171880											
TLE3	7090	broad.mit.edu	37	chr15	70345642	70345643	+	Missense_Mutation	DNP	CC	AA	AA													gcaccgtgttgtccaggcccCctgtccacagtttggtgcca							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	70345643	AA	AA	70345642	3	1	226	1	0	0	0	0	1	0	0	0	16063	623	22	2	427	2	TLE3	15	70345642	Missense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	1338818	70345642	32185750	1126	171881											
UACA	55075	broad.mit.edu	37	chr15	70961608	70961608	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctaaagctttgcattctGccactttgtgtgccagttca	8	10	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70961608	A	A	70961608	3	1	226	1	0	0	0	0	1	0	0	0	16950	1319	46	4	2851	4	UACA	15	70961608	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	615966	70961608	31569784	1127	171882											
STRA6	64220	broad.mit.edu	37	chr15	74476057	74476057	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggaaggcaggggggtccCtccttcttgctgctgcccca	14	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74476057	A	A	74476057	1	1	226	0	1	0	0	0	0	0	0	0	15440	696	24	2		2	STRA6	15	74476057	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3514449	74476057	28055335	1128	171883											
CYP11A1	1583	broad.mit.edu	37	chr15	74654305	74654306	+	Intron	INS	-	T	T													gaaagaaggcatgaatattgINStggaggccacggagcgcttt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74654306	T	T	74654305	6	5	226	0	1	1	1	0	0	0	0	0	4177	1392	48	0		0	CYP11A1	15	74654305	Intron	INS	-	TCGA-91-6829-01A-21D-1855-08	178248	74654305	27877087	1129	171884											
CYP1A2	1544	broad.mit.edu	37	chr15	75043442	75043442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggataggggggtacccagCcaccaggtacaggccagggg	18	10	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75043442	A	A	75043442	1	1	226	0	1	0	0	0	0	0	0	0	4183	754	26	3		3	CYP1A2	15	75043442	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	389137	75043442	27487950	1130	171885											
ULK3	25989	broad.mit.edu	37	chr15	75131431	75131431	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaggagtctgggcgaaccCctccctgccccacaacgaac	10	16	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	75131431	G	G	75131431	1	3	226	0	1	0	0	0	0	0	0	0	17103	638	22	4		4	ULK3	15	75131431	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	87989	75131431	27399961	1131	171886											
UBE2Q2	92912	broad.mit.edu	37	chr15	76168613	76168613	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atcacagagttataaaacagGtaaggatctctggatccctg	9	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76168613	A	A	76168613	5	1	226	1	0	0	0	0	0	0	1	0	16996	1275	44	4	832	4	UBE2Q2	15	76168613	Splice_Site	SNP	G	TCGA-91-6829-01A-21D-1855-08	1037182	76168613	26362779	1132	171887											
ETFA	2108	broad.mit.edu	37	chr15	76587915	76587915	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatatttgctatggctgaCcttaaaaatttctcaccttg	5	8	1	1	rs113453270		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76587915	A	A	76587915	1	1	226	0	1	0	0	0	0	0	0	0	5311	522	18	3		3	ETFA	15	76587915	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	419302	76587915	25943477	1133	171888											
CHRNB4	1143	broad.mit.edu	37	chr15	78922232	78922232	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcagccacaggacgctgcCgttggaccggactatcaagt	14	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78922232	T	T	78922232	3	4	226	1	0	0	0	0	1	0	0	0	3424	652	23	4	1089	4	CHRNB4	15	78922232	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2334317	78922232	23609160	1134	171889											
AP3B2	8120	broad.mit.edu	37	chr15	83349905	83349905	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctcaatgacttctatcaGctgatccttctggtcagagt	7	11	5	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83349905	C	C	83349905	3	2	226	1	0	0	0	0	1	0	0	0	747	962	34	4	2709	4	AP3B2	15	83349905	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4427673	83349905	19181487	1135	171890											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84706518	84706518	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taatttgtgttctctagaccGctacaaacaaaggtgctgcc	8	10	1	1	rs11857906	byFrequency;by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	84706518	C	C	84706518	3	2	226	1	0	0	0	0	1	0	0	0	276	1087	38	4	5150	4	ADAMTSL3	15	84706518	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1356613	84706518	17824874	1136	171891											
ZNF592	9640	broad.mit.edu	37	chr15	85341719	85341719	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtcaaggtgggatgccttgCgggaggaggccggggaggag	22	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85341719	G	G	85341719	1	3	226	0	1	0	0	0	0	0	0	0	18149	783	27	4		4	ZNF592	15	85341719	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	635201	85341719	17189673	1137	171892											
SLC28A1	9154	broad.mit.edu	37	chr15	85464112	85464112	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagatgaaggggtcctacActgggctgggagttgggagg	19	5	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85464112	G	G	85464112	1	3	226	0	1	0	0	0	0	0	0	0	14645	174	6	5		5	SLC28A1	15	85464112	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	122393	85464112	17067280	1138	171893											
SLC28A1	9154	broad.mit.edu	37	chr15	85488468	85488468	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctgcgcttctgagggCtgttctcccccgggaaccat	11	14	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85488468	A	A	85488468	1	1	226	0	1	0	0	0	0	0	0	0	14645	812	28	3		3	SLC28A1	15	85488468	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	24356	85488468	17042924	1139	171894											
NTRK3	4916	broad.mit.edu	37	chr15	88576157	88576157	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatgacagggatgcgagTcatgccaatgaccacagtgt	11	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88576157	C	C	88576157	3	2	226	1	0	0	0	0	1	0	0	0	10803	1667	58	5	1293	5	NTRK3	15	88576157	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	3087689	88576157	13955235	1140	171895											
ACAN	176	broad.mit.edu	37	chr15	89414627	89414627	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgcagaccaggaggtatgtGaggagggctggaacaagtac	16	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89414627	A	A	89414627	3	1	226	1	0	0	0	0	1	0	0	0	117	1291	45	4	7011	4	ACAN	15	89414627	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	838470	89414627	13116765	1141	171896											
FANCI	55215	broad.mit.edu	37	chr15	89811521	89811521	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttagtagaggctggtctTgaactcctgggatcaagtga	12	6	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89811521	G	G	89811521	1	3	226	0	1	0	0	0	0	0	0	0	5726	1827	63	5		5	FANCI	15	89811521	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	396894	89811521	12719871	1142	171897											
POLG	5428	broad.mit.edu	37	chr15	89865046	89865046	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcaccacttggggcaggAtggccccatagaggccttcc	12	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	89865046	G	G	89865046	3	3	226	1	0	0	0	0	1	0	0	0	12295	333	12	5	1232	5	POLG	15	89865046	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	53525	89865046	12666346	1143	171898											
SYNM	23336	broad.mit.edu	37	chr15	99672530	99672530	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagaggcatcagaccacccAgcagatagtttaccatgggc	10	12	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99672530	T	T	99672530	3	4	226	1	0	0	0	0	1	0	0	0	15574	188	7	5	3978	5	SYNM	15	99672530	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	9807484	99672530	2858862	1144	171899											
LYSMD4	145748	broad.mit.edu	37	chr15	100269825	100269825	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcagaaggggtttcagttCtttgtgggtctccatcagga	13	8	5	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100269825	T	T	100269825	3	4	226	1	0	0	0	0	1	0	0	0	9215	922	32	4	500	4	LYSMD4	15	100269825	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	597295	100269825	2261567	1145	171900											
ADAMTS17	170691	broad.mit.edu	37	chr15	100649325	100649325	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagttcacatggcttatctgAggagggaaaggttggaggac	16	5	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100649325	T	T	100649325	1	4	226	0	1	0	0	0	0	0	0	0	262	319	11	5		5	ADAMTS17	15	100649325	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	379500	100649325	1882067	1146	171901											
OR4F6	390648	broad.mit.edu	37	chr15	102345921	102345921	+	5'Flank	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcacagccgacagaggCaatggatgaagccaatcact	11	10	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102345921	G	G	102345921	1	3	226	0	1	0	0	0	0	0	0	0	11160	725	25	4		4	OR4F6	15	102345921	5'Flank	SNP	C	TCGA-91-6829-01A-21D-1855-08	1696596	102345921	185471	1147	171902											
CLCN7	1186	broad.mit.edu	37	chr16	1511526	1511526	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaacccacgctctgggtgCgggcacaggggaccgggagt	17	13	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1511526	A	A	1511526	1	1	226	0	1	0	0	0	0	0	0	0	3499	783	27	3		3	CLCN7	16	1511526	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08		1511526	88843227	1148	171903											
EME2	197342	broad.mit.edu	37	chr16	1825092	1825092	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcccccgagaccaccgcCcggccccacctggctgtcat	8	21	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1825092	T	T	1825092	2	4	226	1	0	0	0	0	0	0	0	1	5131	610	22	4		4	EME2	16	1825092	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	313566	1825092	88529661	1149	171904											
PKMYT1	9088	broad.mit.edu	37	chr16	3026606	3026606	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacactgtcctgccaagggAggtgcagaaacacaaaggag	14	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3026606	G	G	3026606	1	3	226	0	1	0	0	0	0	0	0	0	12073	319	11	5		5	PKMYT1	16	3026606	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	1201514	3026606	87328147	1150	171905											
CLDN9	9080	broad.mit.edu	37	chr16	3063924	3063924	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctgcacgtgccccccGccccaggtcgagcggccccg	12	21	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3063924	A	A	3063924	2	1	226	1	0	0	0	0	0	0	0	1	3524	1074	38	4		4	CLDN9	16	3063924	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	37318	3063924	87290829	1151	171906											
TIGD7	91151	broad.mit.edu	37	chr16	3349677	3349677	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaagaacatacattttattCgaccatcctcactggttagg	8	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3349677	T	T	3349677	3	4	226	1	0	0	0	0	1	0	0	0	16024	884	31	4	715	4	TIGD7	16	3349677	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	285753	3349677	87005076	1152	171907											
ZNF174	7727	broad.mit.edu	37	chr16	3451956	3451956	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctccagggtcatgatccCaaaggcttaacccgtttaca	7	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3451956	G	G	3451956	1	3	226	0	1	0	0	0	0	0	0	0	17870	609	21	4		4	ZNF174	16	3451956	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	102279	3451956	86902797	1153	171908											
CREBBP	1387	broad.mit.edu	37	chr16	3779919	3779919	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggtgtcagcatgggaccCagtaccaccaggcatcctgg	13	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3779919	A	A	3779919	1	1	226	0	1	0	0	0	0	0	0	0	3893	609	21	2		2	CREBBP	16	3779919	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	327963	3779919	86574834	1154	171909											
TFAP4	7023	broad.mit.edu	37	chr16	4310143	4310143	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaaacagagttgatgaccGaggaggggcccatggtgacg	17	7	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4310143	T	T	4310143	4	4	226	1	0	0	0	0	0	1	0	0	15915	1059	37	3	254	3	TFAP4	16	4310143	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	530224	4310143	86044610	1155	171910											
PPL	5493	broad.mit.edu	37	chr16	4937127	4937127	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtagaatttcttactaagAtcagttacctgtctgaggag	9	6	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4937127	G	G	4937127	1	3	226	0	1	0	0	0	0	0	0	0	12435	348	12	5		5	PPL	16	4937127	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	626984	4937127	85417626	1156	171911											
GRIN2A	2903	broad.mit.edu	37	chr16	9858360	9858360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaatccacggatttcttcCacagctgccggggtctagag	12	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9858360	A	A	9858360	3	1	226	1	0	0	0	0	1	0	0	0	6845	595	21	2	1357	2	GRIN2A	16	9858360	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4921233	9858360	80496393	1157	171912											
RUNDC2A	84127	broad.mit.edu	37	chr16	12145814	12145814	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgtttaaaaagacacctGgggcaggggagagctcagag	15	7	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12145814	T	T	12145814	3	4	226	1	0	0	0	0	1	0	0	0	13854	1348	47	2	889	2	RUNDC2A	16	12145814	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2287454	12145814	78208939	1158	171913											
XYLT1	64131	broad.mit.edu	37	chr16	17294544	17294544	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caagagaacagagaggagaaAgtgaggctctgccatccttt	12	8	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17294544	T	T	17294544	1	4	226	0	1	0	0	0	0	0	0	0	17590	87	3	5		5	XYLT1	16	17294544	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	5148730	17294544	73060209	1159	171914											
ZP2	7783	broad.mit.edu	37	chr16	21215360	21215360	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	attgaacatactttcgttttGagcagagttttgctgaaatg	9	5	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21215360	C	C	21215360	2	2	226	1	0	0	0	0	0	0	0	1	18345	1277	45	4		4	ZP2	16	21215360	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	3920816	21215360	69139393	1160	171915											
OTOA	146183	broad.mit.edu	37	chr16	21709214	21709214	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtaagttggaaaagtacAtttatatgtcaccattacta	7	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21709214	C	C	21709214	1	2	226	0	1	0	0	0	0	0	0	0	11396	232	8	5		5	OTOA	16	21709214	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	493854	21709214	68645539	1161	171916											
EEF2K	29904	broad.mit.edu	37	chr16	22285097	22285097	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgtcacccaggaggaGctggtaggaacctgggctgc	16	11	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22285097	T	T	22285097	1	4	226	0	1	0	0	0	0	0	0	0	4970	986	34	3		3	EEF2K	16	22285097	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	575883	22285097	68069656	1162	171917											
PRKCB	5579	broad.mit.edu	37	chr16	24197011	24197011	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccttcactccatttgcCaatatgagaaccctgatgtg	6	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24197011	A	A	24197011	1	1	226	0	1	0	0	0	0	0	0	0	12614	609	21	2		2	PRKCB	16	24197011	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1911914	24197011	66157742	1163	171918											
SRCAP	10847	broad.mit.edu	37	chr16	30724818	30724818	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgctgaccatactctctctGattctctctgtctctttgca	5	13	5	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30724818	T	T	30724818	1	4	226	0	1	0	0	0	0	0	0	0	15253	1305	45	3		3	SRCAP	16	30724818	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6527807	30724818	59629935	1164	171919											
ITGAD	3681	broad.mit.edu	37	chr16	31435763	31435763	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgggatggcatgaggccGgatgctctctgatctctaaa	12	9	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31435763	T	T	31435763	1	4	226	0	1	0	0	0	0	0	0	0	7954	1131	39	1		1	ITGAD	16	31435763	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	710945	31435763	58918990	1165	171920											
AHSP	51327	broad.mit.edu	37	chr16	31539839	31539839	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggtggaggactggatgAacttctacatcaactattac	10	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31539839	G	G	31539839	3	3	226	1	0	0	0	0	1	0	0	0	421	246	9	5	142	5	AHSP	16	31539839	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	104076	31539839	58814914	1166	171921											
ZNF267	10308	broad.mit.edu	37	chr16	31906112	31906112	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttcttctttcctttcaagGagctgttccctgcatacatt	6	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31906112	T	T	31906112	1	4	226	0	1	0	0	0	0	0	0	0	17932	1189	41	3		3	ZNF267	16	31906112	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	366273	31906112	58448641	1167	171922											
ABCC12	94160	broad.mit.edu	37	chr16	48172069	48172069	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaatgcctggccctgggaaCcgtaagaaccccttagaaga	12	11	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48172069	G	G	48172069	1	3	226	0	1	0	0	0	0	0	0	0	52	522	18	4		4	ABCC12	16	48172069	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	16265957	48172069	42182684	1168	171923											
ABCC11	85320	broad.mit.edu	37	chr16	48201284	48201284	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaattctaccacctggagGgtagagaaaggcgaggggag	15	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48201284	T	T	48201284	1	4	226	0	1	0	0	0	0	0	0	0	51	1247	43	2		2	ABCC11	16	48201284	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	29215	48201284	42153469	1169	171924											
SLC6A2	6530	broad.mit.edu	37	chr16	55691008	55691008	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaaatctggggcgcagaaaGaactggacagggctaacggg	16	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55691008	T	T	55691008	1	4	226	0	1	0	0	0	0	0	0	0	14797	957	33	3		3	SLC6A2	16	55691008	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	7489724	55691008	34663745	1170	171925											
SLC12A3	6559	broad.mit.edu	37	chr16	56904030	56904030	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctacttcctcatctcCcggagtctgggcccagagct	10	16	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56904030	T	T	56904030	2	4	226	1	0	0	0	0	0	0	0	1	14497	610	22	4		4	SLC12A3	16	56904030	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1213022	56904030	33450723	1171	171926											
KIFC3	3801	broad.mit.edu	37	chr16	57804605	57804605	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actccacctccactgtcttgAtgacatactgcagggtgagg	10	12	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57804605	C	C	57804605	3	2	226	1	0	0	0	0	1	0	0	0	8384	333	12	5	1789	5	KIFC3	16	57804605	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	900575	57804605	32550148	1172	171927											
CNGB1	1258	broad.mit.edu	37	chr16	57996667	57996667	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcctgggcagaggctccCaaggggcagggcccatccca	14	16	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57996667	T	T	57996667	1	4	226	0	1	0	0	0	0	0	0	0	3632	609	21	4		4	CNGB1	16	57996667	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	192062	57996667	32358086	1173	171928											
CNOT1	23019	broad.mit.edu	37	chr16	58631550	58631550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacatggagagatgctatgcCaaagaggaaagtctgcagga	13	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58631550	A	A	58631550	1	1	226	0	1	0	0	0	0	0	0	0	3649	609	21	2		2	CNOT1	16	58631550	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	634883	58631550	31723203	1174	171929											
CES3	23491	broad.mit.edu	37	chr16	67007010	67007010	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcaagtggtggcagagtcCcagcacggcagcccgcctct	12	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67007010	T	T	67007010	1	4	226	0	1	0	0	0	0	0	0	0	3301	638	22	4		4	CES3	16	67007010	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	8375460	67007010	23347743	1175	171930											
TRADD	8717	broad.mit.edu	37	chr16	67190605	67190605	+	Intron	DEL	C	-	-													cagtcaggtatccagttcatCccccctccctccaccctgga							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	67190605	-	-	67190605	6	5	226	0	1	1	0	1	0	0	0	0	16560	870	30	0		0	TRADD	16	67190605	Intron	DEL	C	TCGA-91-6829-01A-21D-1855-08	183595	67190605	23164148	1176	171931											
NFAT5	10725	broad.mit.edu	37	chr16	69693517	69693517	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaactttgtaactttattaCatattcacagaattaataga	5	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69693517	T	T	69693517	1	4	226	0	1	0	0	0	0	0	0	0	10455	493	17	4		4	NFAT5	16	69693517	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2502912	69693517	20661236	1177	171932											
AARS	16	broad.mit.edu	37	chr16	70301455	70301455	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaattcaatcaagctatgTtcagcctcagagacatgaga	8	9	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70301455	A	A	70301455	1	1	226	0	1	0	0	0	0	0	0	0	19	1740	60	5		5	AARS	16	70301455	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	607938	70301455	20053298	1178	171933											
DDX19A	55308	broad.mit.edu	37	chr16	70364000	70364000	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcagtggcaggcctgGcccttccctctcagccagct	12	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70364000	A	A	70364000	1	1	226	0	1	0	0	0	0	0	0	0	4379	1218	42	4		4	DDX19A	16	70364000	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	62545	70364000	19990753	1179	171934											
PMFBP1	83449	broad.mit.edu	37	chr16	72153084	72153084	+	3'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccatggcaggaagtggacaAaactcaacaaaagttagtgt	10	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72153084	T	T	72153084	1	4	226	0	1	0	0	0	0	0	0	0	12229	29	1	5		5	PMFBP1	16	72153084	3'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	1789084	72153084	18201669	1180	171935											
CNTNAP4	85445	broad.mit.edu	37	chr16	76513531	76513531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatgttgacgtaatttgCaacttgattaaaatatgtat	7	4	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76513531	A	A	76513531	1	1	226	0	1	0	0	0	0	0	0	0	3681	725	25	3		3	CNTNAP4	16	76513531	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4360447	76513531	13841222	1181	171936											
CNTNAP4	85445	broad.mit.edu	37	chr16	76592360	76592360	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tctatttggacagaaattctGactttatatttcttttctct	4	7	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76592360	T	T	76592360	1	4	226	0	1	0	0	0	0	0	0	0	3681	1305	45	3		3	CNTNAP4	16	76592360	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	78829	76592360	13762393	1182	171937											
ADAMTS18	170692	broad.mit.edu	37	chr16	77393252	77393252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgatggtgaaggcaaggcCaagtcctgtgtcctcattga	13	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77393252	A	A	77393252	3	1	226	1	0	0	0	0	1	0	0	0	263	594	21	2	2444	2	ADAMTS18	16	77393252	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	800892	77393252	12961501	1183	171938											
PLCG2	5336	broad.mit.edu	37	chr16	81914475	81914475	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtttttgcattaagtgactTgtctaaggttcttttttttg	8	5	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	81914475	G	G	81914475	1	3	226	0	1	0	0	0	0	0	0	0	12131	1827	63	5		5	PLCG2	16	81914475	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	4521223	81914475	8440278	1184	171939											
CDH13	1012	broad.mit.edu	37	chr16	83781970	83781970	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgggaagaatgtaagtgtgTgggaacagcaaagtaaatgt	14	2	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83781970	A	A	83781970	1	1	226	0	1	0	0	0	0	0	0	0	3129	1711	59	5		5	CDH13	16	83781970	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	1867495	83781970	6572783	1185	171940											
MBTPS1	8720	broad.mit.edu	37	chr16	84103405	84103406	+	Intron	DNP	GG	AA	AA													acatctttccaagagttgcgGgaacagtggtgcctcctccc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	84103406	AA	AA	84103405	1	1	226	0	1	0	0	0	0	0	0	0	9454	1247	43	4		4	MBTPS1	16	84103405	Intron	DNP	GG	TCGA-91-6829-01A-21D-1855-08	321435	84103405	6251348	1186	171941											
FBXO31	79791	broad.mit.edu	37	chr16	87377299	87377299	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcctgaacagaggcttgaAtctcatagggtcatcgacgt	11	9	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87377299	G	G	87377299	3	3	226	1	0	0	0	0	1	0	0	0	5798	101	4	5	1081	5	FBXO31	16	87377299	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	3273894	87377299	2977454	1187	171942											
CBFA2T3	863	broad.mit.edu	37	chr16	88951442	88951442	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccacgctcccgccccacCgggctgctcaccaagcggcc	10	22	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88951442	A	A	88951442	1	1	226	0	1	0	0	0	0	0	0	0	2724	667	23	1		1	CBFA2T3	16	88951442	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1574143	88951442	1403311	1188	171943											
CDH15	1013	broad.mit.edu	37	chr16	89245971	89245971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accacaagcgtctcccctacCccctggttcaggtgagcagg	10	16	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89245971	A	A	89245971	3	1	226	1	0	0	0	0	1	0	0	0	3130	623	22	2	196	2	CDH15	16	89245971	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	294529	89245971	1108782	1189	171944											
DPEP1	1800	broad.mit.edu	37	chr16	89703053	89703053	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactctatcagctgggcatGcggtacctgaccctcaccca	9	16	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89703053	T	T	89703053	3	4	226	1	0	0	0	0	1	0	0	0	4753	1319	46	3	497	3	DPEP1	16	89703053	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	457082	89703053	651700	1190	171945											
PRDM7	11105	broad.mit.edu	37	chr16	90127890	90127890	+	Frame_Shift_Del	DEL	C	-	-													tggccgaggatttatcttttCcatccacatactcatagcag							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	90127890	-	-	90127890	7	5	226	1	0	1	0	1	0	0	0	0	12567	855	30	0	570	0	PRDM7	16	90127890	Frame_Shift_Del	DEL	C	TCGA-91-6829-01A-21D-1855-08	424837	90127890	226863	1191	171946											
GSG2	83903	broad.mit.edu	37	chr17	3629369	3629369	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaggacctgtttaccggtGacggtgactaccagtttgac	12	9	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3629369	C	C	3629369	3	2	226	1	0	0	0	0	1	0	0	0	6888	1290	45	4	2142	4	GSG2	17	3629369	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08		3629369	77565841	1192	171947											
GSG2	83903	broad.mit.edu	37	chr17	3629701	3629701	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgtttcaacctccatcCccacaggagggtggaactcc	10	14	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3629701	G	G	3629701	1	3	226	0	1	0	0	0	0	0	0	0	6888	638	22	4		4	GSG2	17	3629701	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	332	3629701	77565509	1193	171948											
ITGAE	3682	broad.mit.edu	37	chr17	3632728	3632728	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcccaaagctgccccctGggcgatggagtcacaccgct	12	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3632728	T	T	3632728	1	4	226	0	1	0	0	0	0	0	0	0	7955	1363	47	2		2	ITGAE	17	3632728	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3027	3632728	77562482	1194	171949											
RNF167	26001	broad.mit.edu	37	chr17	4845800	4845800	+	Intron	DEL	A	-	-													ggagctgggcagctgagggtAaaaaaaaggcaccaggaatg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	4845800	-	-	4845800	6	5	226	0	1	1	0	1	0	0	0	0	13569	377	13	0		0	RNF167	17	4845800	Intron	DEL	A	TCGA-91-6829-01A-21D-1855-08	1213072	4845800	76349410	1195	171950											
KIF1C	10749	broad.mit.edu	37	chr17	4906198	4906198	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccctggcaacagggacaGtgacatggtagaagggtctt	13	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4906198	T	T	4906198	1	4	226	0	1	0	0	0	0	0	0	0	8355	1044	36	3		3	KIF1C	17	4906198	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	60398	4906198	76289012	1196	171951											
ZFP3	124961	broad.mit.edu	37	chr17	4996298	4996298	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgacatcaaagtgttcactGtatggagtaatctgcaaaat	8	8	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4996298	C	C	4996298	3	2	226	1	0	0	0	0	1	0	0	0	17769	1377	48	4	1501	4	ZFP3	17	4996298	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	90100	4996298	76198912	1197	171952											
USP6	9098	broad.mit.edu	37	chr17	5033994	5033994	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcagtgagtcatcctctAtgctcccctcacccctaaag	6	15	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5033994	G	G	5033994	1	3	226	0	1	0	0	0	0	0	0	0	17213	464	16	5		5	USP6	17	5033994	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	37696	5033994	76161216	1198	171953											
NLRP1	22861	broad.mit.edu	37	chr17	5456666	5456666	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcttctgccttggatctcttCcccatccctgcttcagaaca	6	16	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5456666	T	T	5456666	1	4	226	0	1	0	0	0	0	0	0	0	10566	870	30	4		4	NLRP1	17	5456666	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	422672	5456666	75738544	1199	171954											
C17orf81	23587	broad.mit.edu	37	chr17	7155856	7155856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcgccagagcagggaccgGacgcgagttggagatgttgg	20	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7155856	T	T	7155856	3	4	226	1	0	0	0	0	1	0	0	0	1903	1174	41	3	37	3	C17orf81	17	7155856	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1699190	7155856	74039354	1200	171955											
TP53	7157	broad.mit.edu	37	chr17	7579471	7579471	+	Frame_Shift_Del	DEL	G	-	-													gctgctggtgcaggggccacGgggggagcagcctctggcat					rs56275308		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	7579471	-	-	7579471	7	5	226	1	0	1	0	1	0	0	0	0	16505	1103	39	0	1086	0	TP53	17	7579471	Frame_Shift_Del	DEL	G	TCGA-91-6829-01A-21D-1855-08	423615	7579471	73615739	1201	171956											
PFAS	5198	broad.mit.edu	37	chr17	8169551	8169551	+	Splice_Site	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttcttctccttcctccaGaccgcctcctctgctcaggc	6	19	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8169551	T	T	8169551	5	4	226	1	0	0	0	0	0	0	1	0	11849	956	33	3	2783	3	PFAS	17	8169551	Splice_Site	SNP	G	TCGA-91-6829-01A-21D-1855-08	590080	8169551	73025659	1202	171957											
MYH13	8735	broad.mit.edu	37	chr17	10231408	10231408	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgacgttcataaaagagcgGatgttgtactggatgcagaa	12	5	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10231408	A	A	10231408	2	1	226	1	0	0	0	0	0	0	0	1	10126	1164	41	4		4	MYH13	17	10231408	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	2061857	10231408	70963802	1203	171958											
MYH4	4622	broad.mit.edu	37	chr17	10369442	10369442	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttccacatgtacattttAaaacatatcagagtttacaa	4	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10369442	G	G	10369442	1	3	226	0	1	0	0	0	0	0	0	0	10131	377	13	5		5	MYH4	17	10369442	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	138034	10369442	70825768	1204	171959											
MYH1	4619	broad.mit.edu	37	chr17	10419268	10419268	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgaactgataggcattGtcagagatggagaagatgtg	14	4	1	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10419268	T	T	10419268	3	4	226	1	0	0	0	0	1	0	0	0	10123	1368	48	3	5483	3	MYH1	17	10419268	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	49826	10419268	70775942	1205	171960											
MYH2	4620	broad.mit.edu	37	chr17	10427854	10427854	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcgatttttctgctcctctCtgtctgttccagagtggccc	9	13	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10427854	G	G	10427854	3	3	226	1	0	0	0	0	1	0	0	0	10129	922	32	4	745	4	MYH2	17	10427854	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	8586	10427854	70767356	1206	171961											
DNAH9	1770	broad.mit.edu	37	chr17	11522884	11522884	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctctaattatctcagccCagaagacctgctgagaagtg	10	11	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11522884	A	A	11522884	3	1	226	1	0	0	0	0	1	0	0	0	4648	594	21	2	1158	2	DNAH9	17	11522884	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1095030	11522884	69672326	1207	171962											
DNAH9	1770	broad.mit.edu	37	chr17	11778317	11778317	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctgaggatgctgatggatGatgctgacgtggctgcctgg	16	9	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11778317	A	A	11778317	3	1	226	1	0	0	0	0	1	0	0	0	4648	1290	45	4	10504	4	DNAH9	17	11778317	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	255433	11778317	69416893	1208	171963											
MYOCD	93649	broad.mit.edu	37	chr17	12666801	12666801	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttaagcttcactgaatctcCctgggaaaccatggagtggc	11	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12666801	T	T	12666801	3	4	226	1	0	0	0	0	1	0	0	0	10181	623	22	4	2867	4	MYOCD	17	12666801	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	888484	12666801	68528409	1209	171964											
NCOR1	9611	broad.mit.edu	37	chr17	16049783	16049783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctttctttagctttcctcCgaggattattttctattctg	6	9	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16049783	A	A	16049783	3	1	226	1	0	0	0	0	1	0	0	0	10330	652	23	1	6481	1	NCOR1	17	16049783	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3382982	16049783	65145427	1210	171965											
TOM1L2	146691	broad.mit.edu	37	chr17	17754212	17754212	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagtcgagtctcaccaggtCggtcctgagccacacctcaa	9	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17754212	A	A	17754212	3	1	226	1	0	0	0	0	1	0	0	0	16476	884	31	3	202	3	TOM1L2	17	17754212	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1704429	17754212	63440998	1211	171966											
SHMT1	6470	broad.mit.edu	37	chr17	18250701	18250701	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaattaaaaacggtgcgaGgtggggacttcctgtagtga	15	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18250701	C	C	18250701	1	2	226	0	1	0	0	0	0	0	0	0	14398	1015	35	4		4	SHMT1	17	18250701	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	496489	18250701	62944509	1212	171967											
KIAA0100	9703	broad.mit.edu	37	chr17	26964909	26964910	+	Missense_Mutation	DNP	CC	AA	AA													tcgaccttcaagtccaccttCcacagtaatgacacagattc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	26964910	AA	AA	26964909	3	1	226	1	0	0	0	0	1	0	0	0	8224	856	30	3	5095	3	KIAA0100	17	26964909	Missense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	8714208	26964909	54230301	1213	171968											
NF1	4763	broad.mit.edu	37	chr17	29527486	29527486	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	agctcttgctggccatggagGaagtaggcagctgacagaaa	14	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29527486	C	C	29527486	3	2	226	1	0	0	0	0	1	0	0	0	10451	1174	41	4	969	4	NF1	17	29527486	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2562577	29527486	51667724	1214	171969											
AMAC1	146861	broad.mit.edu	37	chr17	33520748	33520748	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcccaggaaagcctccacAtagcccagggcggtgtagac	11	15	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33520748	T	T	33520748	4	4	226	1	0	0	0	0	0	1	0	0	559	224	8	5	441	5	AMAC1	17	33520748	Nonsense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	3993262	33520748	47674462	1215	171970											
SLFN13	146857	broad.mit.edu	37	chr17	33768061	33768061	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atattaattggaggattttcTataattagttgcatttcttg	7	3	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33768061	C	C	33768061	3	2	226	1	0	0	0	0	1	0	0	0	14850	1512	53	5	450	5	SLFN13	17	33768061	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	247313	33768061	47427149	1216	171971											
CCL3	6348	broad.mit.edu	37	chr17	34416038	34416038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaggcactcagctccaggtCgctgacatatttctggaccc	9	14	3	1	rs141182065		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34416038	A	A	34416038	3	1	226	1	0	0	0	0	1	0	0	0	2929	884	31	3	23	3	CCL3	17	34416038	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	647977	34416038	46779172	1217	171972											
TADA2A	6871	broad.mit.edu	37	chr17	35836832	35836832	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcactttaaaaaattttttGctatacctgctggattaaat	5	6	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35836832	C	C	35836832	1	2	226	0	1	0	0	0	0	0	0	0	15629	1334	46	4		4	TADA2A	17	35836832	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1420794	35836832	45358378	1218	171973											
MLLT6	4302	broad.mit.edu	37	chr17	36865313	36865313	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cactgcagacagttctgtggGatagcactgatctaagactg	11	9	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36865313	C	C	36865313	1	2	226	0	1	0	0	0	0	0	0	0	9723	1189	41	4		4	MLLT6	17	36865313	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1028481	36865313	44329897	1219	171974											
CACNB1	782	broad.mit.edu	37	chr17	37347809	37347809	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcctccagagatacatcaGagtctgatggacggctggtg	12	11	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37347809	C	C	37347809	3	2	226	1	0	0	0	0	1	0	0	0	2578	942	33	4	1899	4	CACNB1	17	37347809	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	482496	37347809	43847401	1220	171975											
ERBB2	2064	broad.mit.edu	37	chr17	37866304	37866304	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggtctggtgcccagggcGccactcagccctcatcctgc	13	16	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	37866304	C	C	37866304	1	2	226	0	1	0	0	0	0	0	0	0	5248	1102	38	4		4	ERBB2	17	37866304	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	518495	37866304	43328906	1221	171976											
TOP2A	7153	broad.mit.edu	37	chr17	38554793	38554793	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataaaaattctaacatgggCattataaactacatacctcc	3	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38554793	A	A	38554793	1	1	226	0	1	0	0	0	0	0	0	0	16489	725	25	3		3	TOP2A	17	38554793	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	688489	38554793	42640417	1222	171977											
KRT26	353288	broad.mit.edu	37	chr17	38925158	38925158	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccatctagtaagttgcaaTaaatgtcaatttctttttct	4	8	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38925158	A	A	38925158	3	1	226	1	0	0	0	0	1	0	0	0	8534	1406	49	5	258	5	KRT26	17	38925158	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	370365	38925158	42270052	1223	171978											
KRT28	162605	broad.mit.edu	37	chr17	38948732	38948732	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtcattttagatgtcttttCttcaatggagtgaatccttg	9	6	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	38948732	G	G	38948732	3	3	226	1	0	0	0	0	1	0	0	0	8536	922	32	4	56	4	KRT28	17	38948732	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	23574	38948732	42246478	1224	171979											
KRT38	8687	broad.mit.edu	37	chr17	39597003	39597003	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcccaggggagtggacccCacacggactcggttggcatg	16	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39597003	A	A	39597003	2	1	226	1	0	0	0	0	0	0	0	1	8546	581	21	2		2	KRT38	17	39597003	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	648271	39597003	41598207	1225	171980											
KRT19	3880	broad.mit.edu	37	chr17	39684318	39684318	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccgccgtagccgccgccgTaggcccccgaggaggacgag	16	17	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39684318	C	C	39684318	3	2	226	1	0	0	0	0	1	0	0	0	8527	1638	57	5	1044	5	KRT19	17	39684318	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	87315	39684318	41510892	1226	171981											
KRT9	3857	broad.mit.edu	37	chr17	39726341	39726341	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctccagagcactgaggtTcaggggtaagggctgatgac	15	9	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39726341	G	G	39726341	1	3	226	0	1	0	0	0	0	0	0	0	8572	1798	62	5		5	KRT9	17	39726341	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	42023	39726341	41468869	1227	171982											
KCNH4	23415	broad.mit.edu	37	chr17	40327531	40327531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgggtttggggtcagtcCcttcctggaagatgctgtgc	14	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40327531	A	A	40327531	1	1	226	0	1	0	0	0	0	0	0	0	8104	638	22	2		2	KCNH4	17	40327531	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	601190	40327531	40867679	1228	171983											
COASY	80347	broad.mit.edu	37	chr17	40715990	40715990	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccccaggcaagttgctcCctgagctgctccaaccttat	7	16	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40715990	T	T	40715990	3	4	226	1	0	0	0	0	1	0	0	0	3684	623	22	4	809	4	COASY	17	40715990	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	388459	40715990	40479220	1229	171984											
HDAC5	10014	broad.mit.edu	37	chr17	42159947	42159947	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagccccaccagctcactGcctacccagtccacgatgag	7	20	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42159947	T	T	42159947	1	4	226	0	1	0	0	0	0	0	0	0	7077	1334	46	3		3	HDAC5	17	42159947	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1443957	42159947	39035263	1230	171985											
SNX11	29916	broad.mit.edu	37	chr17	46198968	46198968	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatgtgggaggctgggctGcttagtgtcttctagtcacc	15	8	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46198968	T	T	46198968	1	4	226	0	1	0	0	0	0	0	0	0	14996	1334	46	3		3	SNX11	17	46198968	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	4039021	46198968	34996242	1231	171986											
HOXB9	3219	broad.mit.edu	37	chr17	46703290	46703290	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcggctccgccttcaccgcCgcctggccctgccccggggc	13	21	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	46703290	G	G	46703290	2	3	226	1	0	0	0	0	0	0	0	1	7375	639	23	4		4	HOXB9	17	46703290	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	504322	46703290	34491920	1232	171987											
ABCC3	8714	broad.mit.edu	37	chr17	48745744	48745744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcgagggtaggggttggGggttgggaaagtacagtctc	22	4	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48745744	T	T	48745744	1	4	226	0	1	0	0	0	0	0	0	0	54	1247	43	2		2	ABCC3	17	48745744	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2042454	48745744	32449466	1233	171988											
USP32	84669	broad.mit.edu	37	chr17	58283158	58283158	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcacagtataaataattctaGatttattggaagattttaat	5	3	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58283158	C	C	58283158	1	2	226	0	1	0	0	0	0	0	0	0	17190	957	33	4		4	USP32	17	58283158	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	9537414	58283158	22912052	1234	171989											
APPBP2	10513	broad.mit.edu	37	chr17	58571945	58571945	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaactttaacaccatgatcCatcaaagcctgaaaacaatg	5	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58571945	A	A	58571945	3	1	226	1	0	0	0	0	1	0	0	0	818	594	21	2	1540	2	APPBP2	17	58571945	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	288787	58571945	22623265	1235	171990											
INTS2	57508	broad.mit.edu	37	chr17	60003898	60003898	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtaccaaacagggcagaagAagtcttaattctggatcact	9	9	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60003898	T	T	60003898	2	4	226	1	0	0	0	0	0	0	0	1	7848	233	9	5		5	INTS2	17	60003898	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	1431953	60003898	21191312	1236	171991											
ABCA8	10351	broad.mit.edu	37	chr17	66890459	66890459	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagctgtaattctaaaatAtaacaagtaggatataagtt	6	3	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66890459	G	G	66890459	1	3	226	0	1	0	0	0	0	0	0	0	38	464	16	5		5	ABCA8	17	66890459	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	6886561	66890459	14304751	1237	171992											
MAP2K6	5608	broad.mit.edu	37	chr17	67537936	67537936	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccctactgtggattggtGggtttcggggtgaagcaagt	16	6	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67537936	T	T	67537936	1	4	226	0	1	0	0	0	0	0	0	0	9333	1363	47	2		2	MAP2K6	17	67537936	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	647477	67537936	13657274	1238	171993											
SDK2	54549	broad.mit.edu	37	chr17	71354395	71354395	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaacccagaacagccaccCagcccgtcaccctgggctcg	10	18	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71354395	A	A	71354395	1	1	226	0	1	0	0	0	0	0	0	0	14082	609	21	2		2	SDK2	17	71354395	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3816459	71354395	9840815	1239	171994											
KIF19	124602	broad.mit.edu	37	chr17	72350426	72350426	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagcgcagcagcctgtccCtgcactcactgagcgagggc	13	15	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72350426	A	A	72350426	3	1	226	1	0	0	0	0	1	0	0	0	8352	680	24	2	2504	2	KIF19	17	72350426	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	996031	72350426	8844784	1240	171995											
OTOP3	347741	broad.mit.edu	37	chr17	72937670	72937670	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaccggcaggcccagaagGctggacaactcttctcgggg	16	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	72937670	C	C	72937670	3	2	226	1	0	0	0	0	1	0	0	0	11401	1203	42	4	262	4	OTOP3	17	72937670	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	587244	72937670	8257540	1241	171996											
DNAH17	8632	broad.mit.edu	37	chr17	76506406	76506406	+	Intron	SNP	G	A	A													tctgggcgctctcagtggttGgagggggcagtttcaggctg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76506406	A	A	76506406	1	1	226	0	1	0	0	0	0	0	0	0	4641	1363	47	4		4	DNAH17	17	76506406	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	3568736	76506406	4688804	1242	171997	711	2									
DNAH17	8632	broad.mit.edu	37	chr17	76506408	76506408	+	Intron	SNP	A	G	G													tgggcgctctcagtggttggAgggggcagtttcaggctgat							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76506408	G	G	76506408	1	3	226	0	1	0	0	0	0	0	0	0	4641	319	11	5		5	DNAH17	17	76506408	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2	76506408	4688802	1243	171998	711	2									
ENPP7	339221	broad.mit.edu	37	chr17	77705231	77705231	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cacagagccgtgtcgtgcagGataaaggggagaggtccttg	16	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77705231	T	T	77705231	1	4	226	0	1	0	0	0	0	0	0	0	5177	1189	41	3		3	ENPP7	17	77705231	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1198823	77705231	3489979	1244	171999											
CCDC40	55036	broad.mit.edu	37	chr17	78013808	78013808	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgaagaggaatattactaTacagaaacttcatccccgga	8	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78013808	C	C	78013808	2	2	226	1	0	0	0	0	0	0	0	1	2839	1413	49	5		5	CCDC40	17	78013808	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	308577	78013808	3181402	1245	172000											
RNF213	57674	broad.mit.edu	37	chr17	78357710	78357710	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagaaagagtgcccatcctCtggcatttcctgcagaaggt	10	10	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78357710	G	G	78357710	2	3	226	1	0	0	0	0	0	0	0	1	13588	900	32	4		4	RNF213	17	78357710	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	343902	78357710	2837500	1246	172001											
BAIAP2	10458	broad.mit.edu	37	chr17	79058779	79058779	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggccgtgtgtccacttgGgaacagtcccagttgtccag	12	12	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79058779	A	A	79058779	1	1	226	0	1	0	0	0	0	0	0	0	1306	1247	43	4		4	BAIAP2	17	79058779	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	701069	79058779	2136431	1247	172002											
BAIAP2	10458	broad.mit.edu	37	chr17	79090043	79090043	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaggtgtgatctgtccGcccaagggccagaaggccgg	15	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79090043	A	A	79090043	3	1	226	1	0	0	0	0	1	0	0	0	1306	1087	38	4	1744	4	BAIAP2	17	79090043	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	31264	79090043	2105167	1248	172003											
NDC80	10403	broad.mit.edu	37	chr18	2589995	2589995	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttattaagaataactaaaGttatattcttttctcttaaa	4	4	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2589995	A	A	2589995	1	1	226	0	1	0	0	0	0	0	0	0	10337	1044	36	4		4	NDC80	18	2589995	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08		2589995	75487253	1249	172004											
SMCHD1	23347	broad.mit.edu	37	chr18	2722716	2722717	+	Intron	INS	-	T	T													tatttgctaagcatttactcINStttttttcagcttcattttt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2722717	T	T	2722716	6	5	226	0	1	1	1	0	0	0	0	0	14902	928	32	0		0	SMCHD1	18	2722716	Intron	INS	-	TCGA-91-6829-01A-21D-1855-08	132721	2722716	75354532	1250	172005	712	2									
SMCHD1	23347	broad.mit.edu	37	chr18	2722724	2722724	+	Intron	SNP	C	G	G													taagcatttactctttttttCagcttcattttttttgtgtg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2722724	G	G	2722724	1	3	226	0	1	0	0	0	0	0	0	0	14902	841	29	4		4	SMCHD1	18	2722724	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	8	2722724	75354524	1251	172006	712	2									
SMCHD1	23347	broad.mit.edu	37	chr18	2747478	2747478	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaattgcattgtttggccCatatattttagtgtttctta	7	5	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2747478	G	G	2747478	1	3	226	0	1	0	0	0	0	0	0	0	14902	609	21	4		4	SMCHD1	18	2747478	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	24754	2747478	75329770	1252	172007											
SMCHD1	23347	broad.mit.edu	37	chr18	2750424	2750424	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctataattaagttaatgattCttccagacccagaaaaaccc	4	10	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2750424	T	T	2750424	3	4	226	1	0	0	0	0	1	0	0	0	14902	913	32	4	4210	4	SMCHD1	18	2750424	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2946	2750424	75326824	1253	172008											
SMCHD1	23347	broad.mit.edu	37	chr18	2751313	2751313	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	atttctgaagatgacagtatCattaaaaacattaatccagc	5	7	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2751313	T	T	2751313	2	4	226	1	0	0	0	0	0	0	0	1	14902	816	29	4		4	SMCHD1	18	2751313	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	889	2751313	75325935	1254	172009											
SMCHD1	23347	broad.mit.edu	37	chr18	2763596	2763596	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctctgggtttaatcttctCatcagtttctctaattgttt	5	8	5	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2763596	T	T	2763596	1	4	226	0	1	0	0	0	0	0	0	0	14902	841	29	4		4	SMCHD1	18	2763596	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	12283	2763596	75313652	1255	172010											
LPIN2	9663	broad.mit.edu	37	chr18	2923837	2923837	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctttgcccagctgtgggaGaatctgtcccaaagcatccg	11	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2923837	A	A	2923837	3	1	226	1	0	0	0	0	1	0	0	0	9006	942	33	4	600	4	LPIN2	18	2923837	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	160241	2923837	75153411	1256	172011											
LPIN2	9663	broad.mit.edu	37	chr18	2925420	2925420	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gcagggcattttattgatgaGagcttttcatttaggatcaa	10	5	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2925420	C	C	2925420	1	2	226	0	1	0	0	0	0	0	0	0	9006	957	33	4		4	LPIN2	18	2925420	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1583	2925420	75151828	1257	172012											
EPB41L3	23136	broad.mit.edu	37	chr18	5394781	5394781	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttggcctctttaattgcCtgagccagcgcctatccccg	8	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5394781	G	G	5394781	3	3	226	1	0	0	0	0	1	0	0	0	5196	680	24	4	102	4	EPB41L3	18	5394781	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2469361	5394781	72682467	1258	172013											
EPB41L3	23136	broad.mit.edu	37	chr18	5397947	5397947	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctggatgcaaccacacactCacgcccaaaaaaagggtaag	9	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5397947	G	G	5397947	1	3	226	0	1	0	0	0	0	0	0	0	5196	841	29	4		4	EPB41L3	18	5397947	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3166	5397947	72679301	1259	172014											
KIAA0802	23255	broad.mit.edu	37	chr18	8783844	8783844	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggaggacatgcggggccAgcaggagcgggagggcccgg	22	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8783844	T	T	8783844	3	4	226	1	0	0	0	0	1	0	0	0	8264	188	7	5	748	5	KIAA0802	18	8783844	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	3385897	8783844	69293404	1260	172015											
C18orf1	753	broad.mit.edu	37	chr18	13387641	13387641	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacttggacaggctaagatGgaagtgacctgagcctcgcc	14	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13387641	T	T	13387641	1	4	226	0	1	0	0	0	0	0	0	0	1912	1363	47	2		2	C18orf1	18	13387641	5'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	4603797	13387641	64689607	1261	172016											
RNMT	8731	broad.mit.edu	37	chr18	13734586	13734586	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actttaataattggatgaaaAgtgttctcattggtatgatc	8	4	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13734586	T	T	13734586	3	4	226	1	0	0	0	0	1	0	0	0	13617	72	3	5	547	5	RNMT	18	13734586	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	346945	13734586	64342662	1262	172017											
POTEC	388468	broad.mit.edu	37	chr18	14523540	14523540	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagaaggttaatttgcttGttgtatttccatgtatgtct	8	4	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14523540	T	T	14523540	1	4	226	0	1	0	0	0	0	0	0	0	12358	1392	48	3		3	POTEC	18	14523540	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	788954	14523540	63553708	1263	172018											
ANKRD30B	374860	broad.mit.edu	37	chr18	14780072	14780072	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatattaatattgagtgAtgtgaaaatgcaaaatcaga	7	2	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14780072	T	T	14780072	1	4	226	0	1	0	0	0	0	0	0	0	659	348	12	5		5	ANKRD30B	18	14780072	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	256532	14780072	63297176	1264	172019											
ANKRD30B	374860	broad.mit.edu	37	chr18	14784649	14784649	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatgaaaagatttgatctaGataatgccaatactggtatt	8	4	1	5			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14784649	C	C	14784649	1	2	226	0	1	0	0	0	0	0	0	0	659	957	33	4		4	ANKRD30B	18	14784649	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	4577	14784649	63292599	1265	172020											
ANKRD30B	374860	broad.mit.edu	37	chr18	14796169	14796169	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgtacgaatgcttggtaGgctttgtcaggcttgcatat	11	7	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14796169	T	T	14796169	1	4	226	0	1	0	0	0	0	0	0	0	659	1015	35	2		2	ANKRD30B	18	14796169	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	11520	14796169	63281079	1266	172021											
AQP4	361	broad.mit.edu	37	chr18	24445623	24445623	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaaagaaggacttaccCccaccgccttgctgtgggtc	11	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24445623	T	T	24445623	3	4	226	1	0	0	0	0	1	0	0	0	830	637	22	4	960	4	AQP4	18	24445623	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	9649454	24445623	53631625	1267	172022											
DSC1	1823	broad.mit.edu	37	chr18	28736230	28736230	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgtaagggttacacattaCaatatcatggctagtcagca	9	7	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28736230	A	A	28736230	1	1	226	0	1	0	0	0	0	0	0	0	4805	493	17	3		3	DSC1	18	28736230	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4290607	28736230	49341018	1268	172023											
DSG1	1828	broad.mit.edu	37	chr18	28910016	28910016	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtaagtaatgtagtggCttccaaatcactcctaacag	8	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28910016	T	T	28910016	1	4	226	0	1	0	0	0	0	0	0	0	4816	812	28	4		4	DSG1	18	28910016	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	173786	28910016	49167232	1269	172024											
DSG3	1830	broad.mit.edu	37	chr18	29052319	29052319	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgacaggtggttttatccCagttcctgatggctcagaag	12	8	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29052319	A	A	29052319	3	1	226	1	0	0	0	0	1	0	0	0	4818	594	21	2	2020	2	DSG3	18	29052319	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	142303	29052319	49024929	1270	172025											
DSG3	1830	broad.mit.edu	37	chr18	29054422	29054422	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatttacattagagaacttTttatttgattatatacttca	3	4	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29054422	C	C	29054422	1	2	226	0	1	0	0	0	0	0	0	0	4818	1856	64	5		5	DSG3	18	29054422	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2103	29054422	49022826	1271	172026											
ASXL3	80816	broad.mit.edu	37	chr18	31325023	31325023	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgcagggagctcaggCtgtcgtctgtcctctgtgga	15	11	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31325023	A	A	31325023	2	1	226	1	0	0	0	0	0	0	0	1	1072	784	28	3		3	ASXL3	18	31325023	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	2270601	31325023	46752225	1272	172027											
CELF4	56853	broad.mit.edu	37	chr18	34854794	34854794	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtctggctgccgtgtagcgCgttgatggcggcctgcgcct	17	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34854794	G	G	34854794	3	3	226	1	0	0	0	0	1	0	0	0	3248	768	27	4	861	4	CELF4	18	34854794	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3529771	34854794	43222454	1273	172028											
CELF4	56853	broad.mit.edu	37	chr18	34855077	34855077	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccggccccgccccgcgcaCccttgctgttgccgtcgggc	12	21	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34855077	A	A	34855077	5	1	226	1	0	0	0	0	0	0	1	0	3248	521	18	3	918	3	CELF4	18	34855077	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	283	34855077	43222171	1274	172029											
CELF4	56853	broad.mit.edu	37	chr18	34901701	34901701	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcgctgcatcgccttgctGcgtcgggaaaaggagggagg	17	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34901701	A	A	34901701	1	1	226	0	1	0	0	0	0	0	0	0	3248	1334	46	4		4	CELF4	18	34901701	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	46624	34901701	43175547	1275	172030											
RIT2	6014	broad.mit.edu	37	chr18	40695239	40695239	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttaacagtcctgacacttTggagcatcctgccagaccca	8	13	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40695239	C	C	40695239	1	2	226	0	1	0	0	0	0	0	0	0	13498	1827	63	5		5	RIT2	18	40695239	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	5793538	40695239	37382009	1276	172031											
SLC14A2	8170	broad.mit.edu	37	chr18	43262218	43262218	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagggctgtaggtgattgaTaagggctgattaaaatgcac	13	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43262218	C	C	43262218	1	2	226	0	1	0	0	0	0	0	0	0	14510	1421	49	5		5	SLC14A2	18	43262218	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	2566979	43262218	34815030	1277	172032											
KIAA0427	9811	broad.mit.edu	37	chr18	46288103	46288103	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccccgcgccccctgccccTctgcgttcggtgagttattc	10	19	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	46288103	C	C	46288103	1	2	226	0	1	0	0	0	0	0	0	0	8246	1566	54	5		5	KIAA0427	18	46288103	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	3025885	46288103	31789145	1278	172033											
MYO5B	4645	broad.mit.edu	37	chr18	47429071	47429071	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatcctgagggccttcagctCccgcctggccttgagcatcc	10	16	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47429071	T	T	47429071	3	4	226	1	0	0	0	0	1	0	0	0	10173	864	30	4	2922	4	MYO5B	18	47429071	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1140968	47429071	30648177	1279	172034											
MAPK4	5596	broad.mit.edu	37	chr18	48252469	48252469	+	Nonsense_Mutation	SNP	G	T	T													cacaacaccccttccgcattGaggatgagatcgacgacatc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48252469	T	T	48252469	4	4	226	1	0	0	0	0	0	1	0	0	9372	1291	45	3	1005	3	MAPK4	18	48252469	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	823398	48252469	29824779	1280	172035	713	2									
MAPK4	5596	broad.mit.edu	37	chr18	48252472	48252472	+	Missense_Mutation	SNP	G	T	T													aacaccccttccgcattgagGatgagatcgacgacatcgtg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48252472	T	T	48252472	3	4	226	1	0	0	0	0	1	0	0	0	9372	1174	41	3	1008	3	MAPK4	18	48252472	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3	48252472	29824776	1281	172036	713	2									
DCC	1630	broad.mit.edu	37	chr18	51057113	51057113	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacctgtgtccaagaactcTaaccagtgtacaggtcaccc	7	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	51057113	C	C	51057113	1	2	226	0	1	0	0	0	0	0	0	0	4315	1537	53	5		5	DCC	18	51057113	3'UTR	SNP	T	TCGA-91-6829-01A-21D-1855-08	2804641	51057113	27020135	1282	172037											
ST8SIA3	51046	broad.mit.edu	37	chr18	55020063	55020063	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccccggtttccctgaacCcagcccagcccgggatgaga	10	16	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55020063	A	A	55020063	1	1	226	0	1	0	0	0	0	0	0	0	15351	638	22	2		2	ST8SIA3	18	55020063	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	3962950	55020063	23057185	1283	172038											
CDH20	28316	broad.mit.edu	37	chr18	59217138	59217138	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctacaccctgcccctgcCcccttgctttcctcaatcca	3	21	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59217138	A	A	59217138	1	1	226	0	1	0	0	0	0	0	0	0	3136	638	22	2		2	CDH20	18	59217138	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4197075	59217138	18860110	1284	172039											
SERPINB12	89777	broad.mit.edu	37	chr18	61223648	61223648	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccacttaggcaagccaagGggcttattgcaccctgggct	11	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61223648	T	T	61223648	1	4	226	0	1	0	0	0	0	0	0	0	14212	1247	43	2		2	SERPINB12	18	61223648	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2006510	61223648	16853600	1285	172040											
MBP	4155	broad.mit.edu	37	chr18	74701954	74701954	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acggggttttcatcttgggtCcggccgtgtgacttctgggg	16	9	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74701954	A	A	74701954	2	1	226	1	0	0	0	0	0	0	0	1	9452	842	30	3		3	MBP	18	74701954	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	13478306	74701954	3375294	1286	172041											
NFATC1	4772	broad.mit.edu	37	chr18	77193396	77193396	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcttagagaactggccgGgccgtggccacaggtcacga	13	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77193396	T	T	77193396	1	4	226	0	1	0	0	0	0	0	0	0	10456	1247	43	2		2	NFATC1	18	77193396	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2491442	77193396	883852	1287	172042											
MADCAM1	8174	broad.mit.edu	37	chr19	498565	498565	+	Missense_Mutation	SNP	C	G	G													cccggaggtggcctgtacggCccacaaagtcacgcccgtgg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	498565	G	G	498565	3	3	226	1	0	0	0	0	1	0	0	0	9239	739	26	4	417	4	MADCAM1	19	498565	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08		498565	58630418	1288	172043	714	2									
MADCAM1	8174	broad.mit.edu	37	chr19	498569	498569	+	Missense_Mutation	SNP	C	A	A													gaggtggcctgtacggcccaCaaagtcacgcccgtggaccc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	498569	A	A	498569	3	1	226	1	0	0	0	0	1	0	0	0	9239	477	17	3	421	3	MADCAM1	19	498569	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	4	498569	58630414	1289	172044	714	2									
GZMM	3004	broad.mit.edu	37	chr19	547500	547500	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgacggcgcccattctctGcagggggtgggctctgggag	17	12	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	547500	T	T	547500	1	4	226	0	1	0	0	0	0	0	0	0	6984	1334	46	3		3	GZMM	19	547500	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	48931	547500	58581483	1290	172045											
BSG	682	broad.mit.edu	37	chr19	581345	581345	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acggctccgagagcaggttcTtcgtgagttcctcgcagggc	14	12	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	581345	G	G	581345	3	3	226	1	0	0	0	0	1	0	0	0	1538	1609	56	5	881	5	BSG	19	581345	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	33845	581345	58547638	1291	172046											
ABCA7	10347	broad.mit.edu	37	chr19	1049420	1049420	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggccacaacggggccGgcaagaccaccaccctgtga	12	16	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1049420	T	T	1049420	3	4	226	1	0	0	0	0	1	0	0	0	37	1116	39	1	2602	1	ABCA7	19	1049420	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	468075	1049420	58079563	1292	172047											
POLR2E	5434	broad.mit.edu	37	chr19	1091841	1091841	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caccacgatgagagcccgtgTgatgttctcctcctgcatgc	10	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1091841	A	A	1091841	3	1	226	1	0	0	0	0	1	0	0	0	12313	1696	59	5	354	5	POLR2E	19	1091841	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	42421	1091841	58037142	1293	172048											
ZNF556	80032	broad.mit.edu	37	chr19	2878065	2878065	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaactagagagaaagtctAtaaatgtgaaacgtgtggga	11	4	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2878065	G	G	2878065	3	3	226	1	0	0	0	0	1	0	0	0	18114	449	16	5	1123	5	ZNF556	19	2878065	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	1786224	2878065	56250918	1294	172049											
PIP5K1C	23396	broad.mit.edu	37	chr19	3656388	3656388	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagccatctgccccgcaGggcgggccacgcaccatgta	14	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3656388	A	A	3656388	1	1	226	0	1	0	0	0	0	0	0	0	12036	1015	35	4		4	PIP5K1C	19	3656388	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	778323	3656388	55472595	1295	172050											
MATK	4145	broad.mit.edu	37	chr19	3784052	3784052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcggccacggaaggggtgGgtcagactgggctgtggagg	21	8	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3784052	T	T	3784052	1	4	226	0	1	0	0	0	0	0	0	0	9424	1247	43	2		2	MATK	19	3784052	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	127664	3784052	55344931	1296	172051											
MATK	4145	broad.mit.edu	37	chr19	3785136	3785136	+	5'UTR	DEL	C	-	-													agagcctcgccccgccatcgCccccagagggaaactgaggc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	3785136	-	-	3785136	6	5	226	0	1	1	0	1	0	0	0	0	9424	754	26	0		0	MATK	19	3785136	5'UTR	DEL	C	TCGA-91-6829-01A-21D-1855-08	1084	3785136	55343847	1297	172052											
DAPK3	1613	broad.mit.edu	37	chr19	3964600	3964600	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccccacactggccaggCcggccccacagggccctaca	9	22	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3964600	A	A	3964600	1	1	226	0	1	0	0	0	0	0	0	0	4270	754	26	3		3	DAPK3	19	3964600	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	179464	3964600	55164383	1298	172053											
PLIN4	729359	broad.mit.edu	37	chr19	4511819	4511819	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtcttggtggtgtccacaCtggtctggacagtccctttg	12	11	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	4511819	G	G	4511819	3	3	226	1	0	0	0	0	1	0	0	0	12187	565	20	4	1978	4	PLIN4	19	4511819	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	547219	4511819	54617164	1299	172054											
PLIN4	729359	broad.mit.edu	37	chr19	4517573	4517573	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagccactcaccctgagcCtgtggttgggcagcctcggc	13	16	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4517573	T	T	4517573	2	4	226	1	0	0	0	0	0	0	0	1	12187	680	24	4		4	PLIN4	19	4517573	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	5754	4517573	54611410	1300	172055											
DENND1C	79958	broad.mit.edu	37	chr19	6477158	6477158	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgggggtattggcagGgggatcaatcagtcaggagg	20	5	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6477158	T	T	6477158	1	4	226	0	1	0	0	0	0	0	0	0	4468	1247	43	2		2	DENND1C	19	6477158	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1959585	6477158	52651825	1301	172056											
INSR	3643	broad.mit.edu	37	chr19	7184418	7184418	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcagccctgcctccgcgagtTcttgcatttgtggtgcaggt	13	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7184418	A	A	7184418	3	1	226	1	0	0	0	0	1	0	0	0	7843	1783	62	5	3345	5	INSR	19	7184418	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	707260	7184418	51944565	1302	172057											
MUC16	94025	broad.mit.edu	37	chr19	9062533	9062533	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcctgtctgtggttatcaCcaggccagggttgagaagag	13	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9062533	A	A	9062533	3	1	226	1	0	0	0	0	1	0	0	0	10067	507	18	3	18938	3	MUC16	19	9062533	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1878115	9062533	50066450	1303	172058											
OR7G1	125962	broad.mit.edu	37	chr19	9226066	9226066	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcagtgggtggcaaatgGccacatagcggtcgtaggcc	14	11	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9226066	T	T	9226066	3	4	226	1	0	0	0	0	1	0	0	0	11316	1203	42	3	635	3	OR7G1	19	9226066	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	163533	9226066	49902917	1304	172059											
ZNF560	147741	broad.mit.edu	37	chr19	9581105	9581105	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtagttctccagcatcacAtcactgtacaggtttctctg	7	11	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9581105	G	G	9581105	2	3	226	1	0	0	0	0	0	0	0	1	18118	214	8	5		5	ZNF560	19	9581105	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	355039	9581105	49547878	1305	172060											
COL5A3	50509	broad.mit.edu	37	chr19	10081828	10081828	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caggtctgtgggggtagggaGatggggacagaattaggaaa	19	3	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10081828	T	T	10081828	1	4	226	0	1	0	0	0	0	0	0	0	3730	957	33	3		3	COL5A3	19	10081828	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	500723	10081828	49047155	1306	172061											
EMR3	84658	broad.mit.edu	37	chr19	14762143	14762143	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctgaggcagaaggattgCttgggcccaggaatttgagc	16	7	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14762143	A	A	14762143	1	1	226	0	1	0	0	0	0	0	0	0	5148	812	28	3		3	EMR3	19	14762143	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4680315	14762143	44366840	1307	172062											
EMR2	30817	broad.mit.edu	37	chr19	14877104	14877104	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaatcggttgccagcccgGgcggcagcggcactgatagc	16	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14877104	T	T	14877104	3	4	226	1	0	0	0	0	1	0	0	0	5147	1232	43	2	1954	2	EMR2	19	14877104	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	114961	14877104	44251879	1308	172063											
WIZ	58525	broad.mit.edu	37	chr19	15535040	15535040	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgaacttgacaagtgatgTctgggggggccggggcacca	16	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15535040	C	C	15535040	3	2	226	1	0	0	0	0	1	0	0	0	17502	1667	58	5	213	5	WIZ	19	15535040	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	657936	15535040	43593943	1309	172064											
CYP4F3	4051	broad.mit.edu	37	chr19	15769135	15769135	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aggagagcctgaggctgcatCccccagtccctgccgtctct	11	16	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15769135	T	T	15769135	3	4	226	1	0	0	0	0	1	0	0	0	4223	855	30	4	1211	4	CYP4F3	19	15769135	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	234095	15769135	43359848	1310	172065											
FAM129C	199786	broad.mit.edu	37	chr19	17654231	17654231	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctggagagagtcagggggCgcgtgctgaaggtgtgttct	20	6	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17654231	T	T	17654231	3	4	226	1	0	0	0	0	1	0	0	0	5484	768	27	4	1574	4	FAM129C	19	17654231	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1885096	17654231	41474752	1311	172066											
UNC13A	23025	broad.mit.edu	37	chr19	17728725	17728725	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccactcatagggctgggtaGccctgctgtccccactccca	9	18	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17728725	T	T	17728725	1	4	226	0	1	0	0	0	0	0	0	0	17110	986	34	3		3	UNC13A	19	17728725	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	74494	17728725	41400258	1312	172067											
MAST3	23031	broad.mit.edu	37	chr19	18233413	18233413	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatatgctggccacagtGtctgttcttagtccccacaa	8	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18233413	T	T	18233413	1	4	226	0	1	0	0	0	0	0	0	0	9418	1392	48	3		3	MAST3	19	18233413	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	504688	18233413	40895570	1313	172068											
SF4	57794	broad.mit.edu	37	chr19	19427361	19427361	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttcatgttcatttttcCagatttagggggagcaaccc	10	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19427361	A	A	19427361	4	1	226	1	0	0	0	0	0	1	0	0	14268	603	21	2	1913	2	SF4	19	19427361	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1193948	19427361	39701622	1314	172069											
ZNF254	9534	broad.mit.edu	37	chr19	24270224	24270224	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtggcgggactcaggcctCcccccagtcagctccacaat	10	17	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24270224	T	T	24270224	1	4	226	0	1	0	0	0	0	0	0	0	17924	870	30	4		4	ZNF254	19	24270224	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4842863	24270224	34858759	1315	172070											
C19orf2	8725	broad.mit.edu	37	chr19	30476162	30476162	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	taatgactataatgcccttcGagaaagactcagcaccttgc	7	11	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30476162	A	A	30476162	3	1	226	1	0	0	0	0	1	0	0	0	1930	1058	37	4	195	4	C19orf2	19	30476162	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	6205938	30476162	28652821	1316	172071											
ZNF536	9745	broad.mit.edu	37	chr19	31025978	31025978	+	Intron	DEL	C	-	-													ccgtcctgcctgctttctggCccaggtccacagctgtgtgg							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	31025978	-	-	31025978	6	5	226	0	1	1	0	1	0	0	0	0	18101	754	26	0		0	ZNF536	19	31025978	Intron	DEL	C	TCGA-91-6829-01A-21D-1855-08	549816	31025978	28103005	1317	172072											
ZNF536	9745	broad.mit.edu	37	chr19	31048131	31048131	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgttcgtggtcctcggtgGttatctgcagcttgttaatc	11	9	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31048131	A	A	31048131	1	1	226	0	1	0	0	0	0	0	0	0	18101	1276	44	4		4	ZNF536	19	31048131	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	22153	31048131	28080852	1318	172073											
SLC7A9	11136	broad.mit.edu	37	chr19	33355539	33355539	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaagtctctttacccagCgtcgcgaggaccccgcaagc	9	17	1	0	rs141456885		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33355539	T	T	33355539	2	4	226	1	0	0	0	0	0	0	0	1	14819	755	27	4		4	SLC7A9	19	33355539	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	2307408	33355539	25773444	1319	172074											
CCDC123	84902	broad.mit.edu	37	chr19	33424517	33424517	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tccatattttcttcttttaaTgcctcaaacttttctctggt	3	10	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33424517	A	A	33424517	2	1	226	1	0	0	0	0	0	0	0	1	2785	1451	51	5		5	CCDC123	19	33424517	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	68978	33424517	25704466	1320	172075											
CCDC123	84902	broad.mit.edu	37	chr19	33444390	33444390	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaggctggacacgtttAaaaaaataagccccaaagca	8	8	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33444390	C	C	33444390	1	2	226	0	1	0	0	0	0	0	0	0	2785	377	13	5		5	CCDC123	19	33444390	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	19873	33444390	25684593	1321	172076											
TMEM149	79713	broad.mit.edu	37	chr19	36231915	36231915	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaagcaaggctcggtctcGgattctcacccgggcagggg	14	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36231915	C	C	36231915	1	2	226	0	1	0	0	0	0	0	0	0	16185	1131	39	4		4	TMEM149	19	36231915	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2787525	36231915	22897068	1322	172077											
NPHS1	4868	broad.mit.edu	37	chr19	36330257	36330257	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtagaccagtcagcgtgaaGgtggtggcctggggtggtac	18	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36330257	A	A	36330257	2	1	226	1	0	0	0	0	0	0	0	1	10677	987	35	4		4	NPHS1	19	36330257	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	98342	36330257	22798726	1323	172078											
WDR62	284403	broad.mit.edu	37	chr19	36557325	36557325	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctcaacgtctgggactGgaaggtaagagccgaccagc	15	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36557325	T	T	36557325	3	4	226	1	0	0	0	0	1	0	0	0	17440	1357	47	2	575	2	WDR62	19	36557325	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	227068	36557325	22571658	1324	172079											
NCCRP1	342897	broad.mit.edu	37	chr19	39689968	39689968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgcccagagcatgagcCttactctgagctccccttgc	11	15	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39689968	A	A	39689968	1	1	226	0	1	0	0	0	0	0	0	0	10308	696	24	2		2	NCCRP1	19	39689968	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3132643	39689968	19439015	1325	172080											
PAF1	54623	broad.mit.edu	37	chr19	39876663	39876663	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	actatcagcttcactggaatCagaagctgcagcttcactgc	8	12	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39876663	T	T	39876663	3	4	226	1	0	0	0	0	1	0	0	0	11477	826	29	4	35	4	PAF1	19	39876663	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	186695	39876663	19252320	1326	172081											
SPTBN4	57731	broad.mit.edu	37	chr19	41066031	41066031	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcacagcctgggccccgtGgagggctggcgcccgacctg	18	15	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41066031	T	T	41066031	1	4	226	0	1	0	0	0	0	0	0	0	15239	1363	47	2		2	SPTBN4	19	41066031	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1189368	41066031	18062952	1327	172082											
CEACAM5	1048	broad.mit.edu	37	chr19	42213867	42213867	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatccctgctgatccagaaCatcatccagaatgacacagg	8	13	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42213867	T	T	42213867	2	4	226	1	0	0	0	0	0	0	0	1	3225	477	17	4		4	CEACAM5	19	42213867	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1147836	42213867	16915116	1328	172083											
PSG6	5675	broad.mit.edu	37	chr19	43448295	43448295	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagaaacaatgaacagagCtgcaatctcataacaggtgt	8	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43448295	G	G	43448295	1	3	226	0	1	0	0	0	0	0	0	0	12765	812	28	4		4	PSG6	19	43448295	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1234428	43448295	15680688	1329	172084											
PSG6	5675	broad.mit.edu	37	chr19	43520230	43520230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagagaagattgtcctgtGtggcacctttgattcctcca	10	10	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43520230	T	T	43520230	1	4	226	0	1	0	0	0	0	0	0	0	12765	1392	48	3		3	PSG6	19	43520230	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	71935	43520230	15608753	1330	172085											
KCNN4	3783	broad.mit.edu	37	chr19	44273904	44273904	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatatccatcatgaagttGtgcacgtgcttctctgcctt	9	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44273904	T	T	44273904	3	4	226	1	0	0	0	0	1	0	0	0	8151	1368	48	3	402	3	KCNN4	19	44273904	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	753674	44273904	14855079	1331	172086											
ZNF223	7766	broad.mit.edu	37	chr19	44564659	44564659	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcactgaggaggagctgGggctgctggaccttgcccag	15	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44564659	T	T	44564659	3	4	226	1	0	0	0	0	1	0	0	0	17903	1232	43	2	73	2	ZNF223	19	44564659	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	290755	44564659	14564324	1332	172087											
ZNF235	9310	broad.mit.edu	37	chr19	44802808	44802808	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccacctgccaggcctccCaaagtgctgggattagaggc	12	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44802808	A	A	44802808	1	1	226	0	1	0	0	0	0	0	0	0	17914	609	21	2		2	ZNF235	19	44802808	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	238149	44802808	14326175	1333	172088											
ZNF180	7733	broad.mit.edu	37	chr19	45004336	45004336	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctaccaacctgggcgtcCgctggcccgcagcccaggct	11	20	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45004336	A	A	45004336	1	1	226	0	1	0	0	0	0	0	0	0	17874	667	23	1		1	ZNF180	19	45004336	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	201528	45004336	14124647	1334	172089											
GIPR	2696	broad.mit.edu	37	chr19	46173932	46173932	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcgggggagctgtaccagCgctgggaacggtaccgcagg	19	11	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46173932	A	A	46173932	3	1	226	1	0	0	0	0	1	0	0	0	6459	768	27	3	118	3	GIPR	19	46173932	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1169596	46173932	12955051	1335	172090											
SYMPK	8189	broad.mit.edu	37	chr19	46345558	46345558	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcatcgcggggccgcttgCgggtgtccttgctgctcggc	16	13	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46345558	A	A	46345558	3	1	226	1	0	0	0	0	1	0	0	0	15558	768	27	3	2863	3	SYMPK	19	46345558	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	171626	46345558	12783425	1336	172091											
CCDC61	729440	broad.mit.edu	37	chr19	46506649	46506649	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggcaagcggtcagacCtcaggagagacttttctccc	13	12	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46506649	T	T	46506649	1	4	226	0	1	0	0	0	0	0	0	0	2860	696	24	4		4	CCDC61	19	46506649	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	161091	46506649	12622334	1337	172092											
HIF3A	64344	broad.mit.edu	37	chr19	46808501	46808501	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccctgccccgggcaccaGgggagtggaaccaggtggga	16	14	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46808501	A	A	46808501	5	1	226	1	0	0	0	0	0	0	1	0	7172	1014	35	4	251	4	HIF3A	19	46808501	Splice_Site	SNP	G	TCGA-91-6829-01A-21D-1855-08	301852	46808501	12320482	1338	172093											
GLTSCR1	29998	broad.mit.edu	37	chr19	48205578	48205578	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccacgctgcctcggccgGcacccccgcatccccgccgc	9	26	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48205578	A	A	48205578	3	1	226	1	0	0	0	0	1	0	0	0	6538	1203	42	4	4639	4	GLTSCR1	19	48205578	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1397077	48205578	10923405	1339	172094											
CYTH2	9266	broad.mit.edu	37	chr19	48982510	48982510	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattacggagctgccccgCctgggtggccggacccctgg	14	14	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48982510	T	T	48982510	1	4	226	0	1	0	0	0	0	0	0	0	4237	754	26	4		4	CYTH2	19	48982510	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	776932	48982510	10146473	1340	172095											
CCDC155	147872	broad.mit.edu	37	chr19	49898410	49898410	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctacctggaggctgtgacaGgccagggcccccaggatgca	14	14	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49898410	A	A	49898410	3	1	226	1	0	0	0	0	1	0	0	0	2815	1000	35	4	206	4	CCDC155	19	49898410	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	915900	49898410	9230573	1341	172096											
FAM71E1	112703	broad.mit.edu	37	chr19	50979296	50979296	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacagccccgcggagaggaCggggtatcagatgcccccga	15	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50979296	G	G	50979296	1	3	226	0	1	0	0	0	0	0	0	0	5662	551	19	4		4	FAM71E1	19	50979296	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1080886	50979296	8149687	1342	172097											
KLK15	55554	broad.mit.edu	37	chr19	51331126	51331126	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgtttacattgcctcctaCaccttccttgcaccctgccc	5	18	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51331126	T	T	51331126	1	4	226	0	1	0	0	0	0	0	0	0	8474	493	17	4		4	KLK15	19	51331126	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	351830	51331126	7797857	1343	172098											
KLK14	43847	broad.mit.edu	37	chr19	51582063	51582063	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaccacagctcccatcctGggccttacctgacaagagtc	7	17	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51582063	A	A	51582063	1	1	226	0	1	0	0	0	0	0	0	0	8473	1363	47	4		4	KLK14	19	51582063	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	250937	51582063	7546920	1344	172099											
C19orf75	284369	broad.mit.edu	37	chr19	51767208	51767208	+	5'UTR	DEL	C	-	-													gatacttctgctctccccatCcccacatcctctttcagtta							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	51767208	-	-	51767208	6	5	226	0	1	1	0	1	0	0	0	0	1969	870	30	0		0	C19orf75	19	51767208	5'UTR	DEL	C	TCGA-91-6829-01A-21D-1855-08	185145	51767208	7361775	1345	172100											
SIGLEC10	89790	broad.mit.edu	37	chr19	51918205	51918205	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagggcccggctgagctGggggtgacctcgaaggagtc	18	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51918205	T	T	51918205	2	4	226	1	0	0	0	0	0	0	0	1	14419	1335	47	2		2	SIGLEC10	19	51918205	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	150997	51918205	7210778	1346	172101											
SIGLEC8	27181	broad.mit.edu	37	chr19	51958820	51958820	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaccgtgaggggcacagGgtcaggctcccccgggtcca	17	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51958820	T	T	51958820	2	4	226	1	0	0	0	0	0	0	0	1	14427	1219	43	2		2	SIGLEC8	19	51958820	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	40615	51958820	7170163	1347	172102											
SIGLEC12	89858	broad.mit.edu	37	chr19	52002534	52002534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacactgaccctgtctccCcaggagccccataaatgggg	12	14	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52002534	A	A	52002534	1	1	226	0	1	0	0	0	0	0	0	0	14421	638	22	2		2	SIGLEC12	19	52002534	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	43714	52002534	7126449	1348	172103											
SIGLEC5	8778	broad.mit.edu	37	chr19	52130566	52130566	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	actcttgtcctcccacctgcTgggcaacttgctccagggcc	9	17	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52130566	C	C	52130566	1	2	226	0	1	0	0	0	0	0	0	0	14424	1595	55	5		5	SIGLEC5	19	52130566	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	128032	52130566	6998417	1349	172104											
ZNF415	55786	broad.mit.edu	37	chr19	53625931	53625931	+	5'UTR	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ttacctgagtaaaagccattCctgactcctttgctctcctc	5	14	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53625931	G	G	53625931	1	3	226	0	1	0	0	0	0	0	0	0	18019	870	30	4		4	ZNF415	19	53625931	5'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	1495365	53625931	5503052	1350	172105											
BIRC8	112401	broad.mit.edu	37	chr19	53793627	53793627	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcttcataacccgtcaTggatggattccttggagaac	11	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53793627	C	C	53793627	3	2	226	1	0	0	0	0	1	0	0	0	1446	1464	51	5	713	5	BIRC8	19	53793627	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	167696	53793627	5335356	1351	172106											
PRKCG	5582	broad.mit.edu	37	chr19	54394899	54394899	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcctggatctctaaccCgtcacactcttcctcactcc	3	20	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54394899	A	A	54394899	1	1	226	0	1	0	0	0	0	0	0	0	12618	667	23	1		1	PRKCG	19	54394899	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	601272	54394899	4734084	1352	172107											
LILRB5	10990	broad.mit.edu	37	chr19	54760611	54760611	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacagaggctggctcagcCcagagggtgggtttggggag	18	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54760611	T	T	54760611	4	4	226	1	0	0	0	0	0	1	0	0	8866	624	22	4	1723	4	LILRB5	19	54760611	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	365712	54760611	4368372	1353	172108											
LILRA2	11027	broad.mit.edu	37	chr19	55087626	55087626	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaaggctcagctcaggcCctgcccccagcagagctctg	10	17	4	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55087626	A	A	55087626	1	1	226	0	1	0	0	0	0	0	0	0	8857	638	22	2		2	LILRA2	19	55087626	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	327015	55087626	4041357	1354	172109											
LILRB1	10859	broad.mit.edu	37	chr19	55143585	55143585	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcttctccgtgggcccCgtgagcccgagtcgcaggtg	14	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55143585	T	T	55143585	2	4	226	1	0	0	0	0	0	0	0	1	8862	639	23	4		4	LILRB1	19	55143585	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	55959	55143585	3985398	1355	172110											
LILRB4	11006	broad.mit.edu	37	chr19	55176537	55176537	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagccgagctgatgcgGggagcagggcagccccagcc	18	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55176537	T	T	55176537	1	4	226	0	1	0	0	0	0	0	0	0	8865	1247	43	2		2	LILRB4	19	55176537	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	32952	55176537	3952446	1356	172111											
KIR2DL3	3804	broad.mit.edu	37	chr19	55266612	55266612	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgggcctggagtggagAtctgggcctggagtggatat	19	5	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55266612	T	T	55266612	1	4	226	0	1	0	0	0	0	0	0	0	8388	348	12	5		5	KIR2DL3	19	55266612	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	90075	55266612	3862371	1357	172112											
NCR1	9437	broad.mit.edu	37	chr19	55417575	55417575	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acactccctgccctgctctgCgtcggtgagttctggcgtgg	13	14	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55417575	T	T	55417575	2	4	226	1	0	0	0	0	0	0	0	1	10332	776	27	4		4	NCR1	19	55417575	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	150963	55417575	3711408	1358	172113											
PTPRH	5794	broad.mit.edu	37	chr19	55707830	55707830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgatttcctcacaatgggGcctgatggggtctaccgaga	12	10	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55707830	T	T	55707830	1	4	226	0	1	0	0	0	0	0	0	0	12911	1218	42	3		3	PTPRH	19	55707830	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	290255	55707830	3421153	1359	172114											
PTPRH	5794	broad.mit.edu	37	chr19	55716615	55716615	+	Intron	DEL	G	-	-													atgtggcccagagggactatGgaatagaaatccgctacgtt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55716615	-	-	55716615	6	5	226	0	1	1	0	1	0	0	0	0	12911	1363	47	0		0	PTPRH	19	55716615	Intron	DEL	G	TCGA-91-6829-01A-21D-1855-08	8785	55716615	3412368	1360	172115											
NLRP11	204801	broad.mit.edu	37	chr19	56319360	56319360	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagcagatctctctccagTagacaaggctcttcatttga	9	10	4	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56319360	C	C	56319360	3	2	226	1	0	0	0	0	1	0	0	0	10568	1638	57	5	1267	5	NLRP11	19	56319360	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	602745	56319360	2809623	1361	172116											
NLRP4	147945	broad.mit.edu	37	chr19	56379097	56379098	+	Missense_Mutation	DNP	CC	AA	AA													tggtaaattgtcacctctcaCccattgattgtgaagtcctt							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	56379098	AA	AA	56379097	3	1	226	1	0	0	0	0	1	0	0	0	10574	507	18	3	2227	3	NLRP4	19	56379097	Missense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	59737	56379097	2749886	1362	172117											
NLRP13	126204	broad.mit.edu	37	chr19	56419176	56419176	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accacagatacttgaggttgCaagctgagtgtctcaaagct	10	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56419176	T	T	56419176	3	4	226	1	0	0	0	0	1	0	0	0	10570	710	25	4	720	4	NLRP13	19	56419176	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	40079	56419176	2709807	1363	172118											
NLRP5	126206	broad.mit.edu	37	chr19	56544274	56544274	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcataagtgccaccaaaggtGtaggaaccaagttcccaaaa	9	10	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56544274	T	T	56544274	1	4	226	0	1	0	0	0	0	0	0	0	10575	1392	48	3		3	NLRP5	19	56544274	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	125098	56544274	2584709	1364	172119											
ZNF667	63934	broad.mit.edu	37	chr19	56953189	56953189	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgccgattgcagaccttcTcacatttattgcatctgtat	6	10	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56953189	C	C	56953189	3	2	226	1	0	0	0	0	1	0	0	0	18201	1551	54	5	661	5	ZNF667	19	56953189	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	408915	56953189	2175794	1365	172120											
ZIM2	23619	broad.mit.edu	37	chr19	57290896	57290896	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaactcccaaccttaggtcCcaaagactctggaataataa	6	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57290896	A	A	57290896	1	1	226	0	1	0	0	0	0	0	0	0	17810	638	22	2		2	ZIM2	19	57290896	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	337707	57290896	1838087	1366	172121											
PEG3	5178	broad.mit.edu	37	chr19	57328349	57328349	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tcactgacagccacactgtgGataaaggactcaccatactc	7	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57328349	C	C	57328349	3	2	226	1	0	0	0	0	1	0	0	0	11814	1164	41	4	3309	4	PEG3	19	57328349	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	37453	57328349	1800634	1367	172122											
PEG3	5178	broad.mit.edu	37	chr19	57344557	57344557	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacatcccatctgatgcagGagaaaatccaccgagtctcc	7	15	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57344557	A	A	57344557	1	1	226	0	1	0	0	0	0	0	0	0	11814	1189	41	4		4	PEG3	19	57344557	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	16208	57344557	1784426	1368	172123											
USP29	57663	broad.mit.edu	37	chr19	57642575	57642575	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggccattacatcagcgaTgtgtatgactttcagaagca	9	9	3	2	rs61757571	byFrequency;by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57642575	G	G	57642575	3	3	226	1	0	0	0	0	1	0	0	0	17186	1461	51	5	2534	5	USP29	19	57642575	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	298018	57642575	1486408	1369	172124											
ZNF772	400720	broad.mit.edu	37	chr19	57988458	57988458	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaccatctctgagccttTgcatacactggtctctctgc	8	13	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57988458	C	C	57988458	1	2	226	0	1	0	0	0	0	0	0	0	18274	1827	63	5		5	ZNF772	19	57988458	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	345883	57988458	1140525	1370	172125											
ZNF416	55659	broad.mit.edu	37	chr19	58087428	58087428	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaggagataccaagacctGgtggcactgattcctgccct	11	12	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58087428	C	C	58087428	1	2	226	0	1	0	0	0	0	0	0	0	18020	1363	47	4		4	ZNF416	19	58087428	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	98970	58087428	1041555	1371	172126											
ZSCAN1	284312	broad.mit.edu	37	chr19	58551818	58551818	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gatccctttctcccgcacagTtctggtatctctggactcgg	9	14	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58551818	C	C	58551818	3	2	226	1	0	0	0	0	1	0	0	0	18355	1739	60	5	377	5	ZSCAN1	19	58551818	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	464390	58551818	577165	1372	172127											
STK35	140901	broad.mit.edu	37	chr20	2097734	2097734	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccaaggcggacatctttGccctgggcattatcatctgg	11	12	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2097734	T	T	2097734	3	4	226	1	0	0	0	0	1	0	0	0	15419	1319	46	3	1325	3	STK35	20	2097734	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08		2097734	60927786	1373	172128											
TGM3	7053	broad.mit.edu	37	chr20	2290771	2290771	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtattggaacctggtctctCcacagtctgaccagtgcttg	10	11	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2290771	A	A	2290771	1	1	226	0	1	0	0	0	0	0	0	0	15954	870	30	3		3	TGM3	20	2290771	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	193037	2290771	60734749	1374	172129											
CPXM1	56265	broad.mit.edu	37	chr20	2776685	2776685	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgatggttggggacgatGtggggcaccttcccatcgtc	16	9	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2776685	T	T	2776685	3	4	226	1	0	0	0	0	1	0	0	0	3869	1368	48	3	859	3	CPXM1	20	2776685	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	485914	2776685	60248835	1375	172130											
VPS16	64601	broad.mit.edu	37	chr20	2845517	2845517	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacctagcaggcaaggctgAccctggcgaccctgggcaca	13	15	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2845517	T	T	2845517	1	4	226	0	1	0	0	0	0	0	0	0	17320	290	10	5		5	VPS16	20	2845517	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	68832	2845517	60180003	1376	172131											
ProSAPiP1	9762	broad.mit.edu	37	chr20	3146025	3146025	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaattgatttttgtccccCctgctcctttcatccccccc	3	20	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3146025	T	T	3146025	1	4	226	0	1	0	0	0	0	0	0	0	12978	638	22	4		4	ProSAPiP1	20	3146025	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	300508	3146025	59879495	1377	172132											
ITPA	3704	broad.mit.edu	37	chr20	3199340	3199340	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggtgccgcgacccgagcCgaccgccccgagtctgcggg	18	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3199340	T	T	3199340	1	4	226	0	1	0	0	0	0	0	0	0	7985	667	23	4		4	ITPA	20	3199340	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	53315	3199340	59826180	1378	172133											
C20orf29	55317	broad.mit.edu	37	chr20	3802818	3802818	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccgaatactgaggacacGggcctttgccgagtgctgta	13	12	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3802818	T	T	3802818	2	4	226	1	0	0	0	0	0	0	0	1	2130	1103	39	1		1	C20orf29	20	3802818	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	603478	3802818	59222702	1379	172134											
RASSF2	9770	broad.mit.edu	37	chr20	4776565	4776565	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgaatgggccggcgcagGccccaggagatgttcaggag	18	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4776565	T	T	4776565	2	4	226	1	0	0	0	0	0	0	0	1	13194	1190	42	3		3	RASSF2	20	4776565	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	973747	4776565	58248955	1380	172135											
HAO1	54363	broad.mit.edu	37	chr20	7866244	7866244	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acacctttctccccctaaccAagtgaaaagatacagagtga	6	12	1	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7866244	C	C	7866244	1	2	226	0	1	0	0	0	0	0	0	0	7017	145	5	5		5	HAO1	20	7866244	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3089679	7866244	55159276	1381	172136											
PLCB4	5332	broad.mit.edu	37	chr20	9360751	9360751	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatttccattttatgatgcCaaaagggcaatgcagatcat	7	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9360751	T	T	9360751	2	4	226	1	0	0	0	0	0	0	0	1	12125	581	21	4		4	PLCB4	20	9360751	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1494507	9360751	53664769	1382	172137											
PLCB4	5332	broad.mit.edu	37	chr20	9368137	9368137	+	Frame_Shift_Del	DEL	A	-	-													gaacttgactgctgggatggAaaaggtgaagaccaagaacc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	9368137	-	-	9368137	7	5	226	1	0	1	0	1	0	0	0	0	12125	233	9	0	1138	0	PLCB4	20	9368137	Frame_Shift_Del	DEL	A	TCGA-91-6829-01A-21D-1855-08	7386	9368137	53657383	1383	172138											
PLCB4	5332	broad.mit.edu	37	chr20	9459499	9459499	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catatttatgggagaagagaGgccagggttgttaagtgcct	14	5	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9459499	T	T	9459499	1	4	226	0	1	0	0	0	0	0	0	0	12125	1015	35	2		2	PLCB4	20	9459499	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	91362	9459499	53566021	1384	172139											
BTBD3	22903	broad.mit.edu	37	chr20	11904408	11904408	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaatatgtgatcagtgcCggtaatttgtaatgaatgaa	10	4	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11904408	T	T	11904408	1	4	226	0	1	0	0	0	0	0	0	0	1554	667	23	4		4	BTBD3	20	11904408	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	2444909	11904408	51121112	1385	172140											
RALGAPA2	57186	broad.mit.edu	37	chr20	20610186	20610186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgctccgtgggcccacCaccatccagctcaggcgctc	10	19	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20610186	A	A	20610186	3	1	226	1	0	0	0	0	1	0	0	0	13122	594	21	2	4687	2	RALGAPA2	20	20610186	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	8705778	20610186	42415334	1386	172141											
NKX2-2	4821	broad.mit.edu	37	chr20	21493166	21493166	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgtcaggcgtctggaggCcgcgcgcagcctgcaccaga	16	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21493166	G	G	21493166	1	3	226	0	1	0	0	0	0	0	0	0	10545	754	26	4		4	NKX2-2	20	21493166	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	882980	21493166	41532354	1387	172142											
NINL	22981	broad.mit.edu	37	chr20	25507047	25507047	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagtccaacactcaccctGgcgaaatggtcgtttccgag	10	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25507047	A	A	25507047	2	1	226	1	0	0	0	0	0	0	0	1	10515	1335	47	4		4	NINL	20	25507047	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	4013881	25507047	37518473	1388	172143											
ZNF337	26152	broad.mit.edu	37	chr20	25657370	25657370	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tccggctgaagtcttgcccaCgctctgcacacttgaatgct	9	14	2	2	rs140373318		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25657370	G	G	25657370	3	3	226	1	0	0	0	0	1	0	0	0	17979	536	19	4	1705	4	ZNF337	20	25657370	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	150323	25657370	37368150	1389	172144											
MYLK2	85366	broad.mit.edu	37	chr20	30421409	30421409	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattttgggcactgcaccttCtctagcctgtgaccctcctg	8	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30421409	A	A	30421409	1	1	226	0	1	0	0	0	0	0	0	0	10151	928	32	3		3	MYLK2	20	30421409	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4764039	30421409	32604111	1390	172145											
SUN5	140732	broad.mit.edu	37	chr20	31573045	31573045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaagcagggccctcagagGgtgtctcccctctccagtgg	12	14	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31573045	T	T	31573045	1	4	226	0	1	0	0	0	0	0	0	0	15512	1247	43	2		2	SUN5	20	31573045	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1151636	31573045	31452475	1391	172146											
C20orf186	149954	broad.mit.edu	37	chr20	31692679	31692679	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcatgcccgcaatgaacGgtgagagcgggtgcctgtgc	14	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31692679	T	T	31692679	3	4	226	1	0	0	0	0	1	0	0	0	2120	1130	39	1	1798	1	C20orf186	20	31692679	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	119634	31692679	31332841	1392	172147											
CDK5RAP1	51654	broad.mit.edu	37	chr20	31960575	31960575	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgctataaaaagataaCactatgaatttccacatgta	5	6	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31960575	A	A	31960575	1	1	226	0	1	0	0	0	0	0	0	0	3175	493	17	3		3	CDK5RAP1	20	31960575	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	267896	31960575	31064945	1393	172148											
ZNF341	84905	broad.mit.edu	37	chr20	32340859	32340859	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctctcttagcccctctcctGagctgtctggtaagtagctg	9	14	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32340859	T	T	32340859	1	4	226	0	1	0	0	0	0	0	0	0	17983	1305	45	3		3	ZNF341	20	32340859	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	380284	32340859	30684661	1394	172149											
MYH7B	57644	broad.mit.edu	37	chr20	33574881	33574881	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagctgcatgaatggtccCggggcagtgcctggctggac	15	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33574881	A	A	33574881	1	1	226	0	1	0	0	0	0	0	0	0	10134	667	23	1		1	MYH7B	20	33574881	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1234022	33574881	29450639	1395	172150											
MYH7B	57644	broad.mit.edu	37	chr20	33578006	33578006	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccacagagcgacattccCtggagtgaccaggccccttg	12	15	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33578006	T	T	33578006	1	4	226	0	1	0	0	0	0	0	0	0	10134	696	24	4		4	MYH7B	20	33578006	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3125	33578006	29447514	1396	172151											
ERGIC3	51614	broad.mit.edu	37	chr20	34135189	34135189	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagtcgaggtgacggtgTttgaccctgactccctggac	14	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34135189	C	C	34135189	3	2	226	1	0	0	0	0	1	0	0	0	5267	1725	60	5	412	5	ERGIC3	20	34135189	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	557183	34135189	28890331	1397	172152											
DLGAP4	22839	broad.mit.edu	37	chr20	35060244	35060244	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccacggaggccttcgccCgcgaggcccgcttccccggg	14	20	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35060244	T	T	35060244	3	4	226	1	0	0	0	0	1	0	0	0	4602	652	23	4	126	4	DLGAP4	20	35060244	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	925055	35060244	27965276	1398	172153											
DLGAP4	22839	broad.mit.edu	37	chr20	35060397	35060397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccttccccagccatgccCaagccaccaagatcaaccgg	7	20	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35060397	A	A	35060397	3	1	226	1	0	0	0	0	1	0	0	0	4602	595	21	2	279	2	DLGAP4	20	35060397	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	153	35060397	27965123	1399	172154											
DSN1	79980	broad.mit.edu	37	chr20	35396519	35396519	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctaacaaaactgaaaaatgtCctccctcttgataaatccaa	3	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35396519	T	T	35396519	1	4	226	0	1	0	0	0	0	0	0	0	4820	870	30	4		4	DSN1	20	35396519	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	336122	35396519	27629001	1400	172155											
C20orf117	140710	broad.mit.edu	37	chr20	35467903	35467903	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagcagctaggaggccggaGtactggccacacctaggact	14	11	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35467903	A	A	35467903	1	1	226	0	1	0	0	0	0	0	0	0	2105	1044	36	4		4	C20orf117	20	35467903	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	71384	35467903	27557617	1401	172156											
TGM2	7052	broad.mit.edu	37	chr20	36779382	36779382	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcttgatgaacttggccgAgccctggtagataaagccct	11	10	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	36779382	G	G	36779382	3	3	226	1	0	0	0	0	1	0	0	0	15953	304	11	5	1624	5	TGM2	20	36779382	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	1311479	36779382	26246138	1402	172157											
PPP1R16B	26051	broad.mit.edu	37	chr20	37531302	37531302	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaataaatcccctctttcCcactgcaggcatcacccaag	4	16	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37531302	A	A	37531302	1	1	226	0	1	0	0	0	0	0	0	0	12467	638	22	2		2	PPP1R16B	20	37531302	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	751920	37531302	25494218	1403	172158											
PTPRT	11122	broad.mit.edu	37	chr20	40714370	40714370	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcggccgtgtacttacccGggccatgttacagatgcgga	14	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40714370	A	A	40714370	3	1	226	1	0	0	0	0	1	0	0	0	12920	1115	39	4	371	4	PTPRT	20	40714370	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3183068	40714370	22311150	1404	172159											
PTPRT	11122	broad.mit.edu	37	chr20	41306419	41306419	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaaagaaaattcggaatTatctgtcacaggaaggcaag	9	6	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41306419	C	C	41306419	1	2	226	0	1	0	0	0	0	0	0	0	12920	1769	61	5		5	PTPRT	20	41306419	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	592049	41306419	21719101	1405	172160											
L3MBTL	26013	broad.mit.edu	37	chr20	42143696	42143696	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atcccaatcaggaccccccaGaggatgatagcacctgtcag	9	14	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42143696	C	C	42143696	3	2	226	1	0	0	0	0	1	0	0	0	8663	943	33	4	286	4	L3MBTL	20	42143696	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	837277	42143696	20881824	1406	172161											
IFT52	51098	broad.mit.edu	37	chr20	42232906	42232906	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagtcttgaacaggtaagcaTgttgaaagcagaaatatctt	10	5	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42232906	A	A	42232906	1	1	226	0	1	0	0	0	0	0	0	0	7631	1479	51	5		5	IFT52	20	42232906	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	89210	42232906	20792614	1407	172162											
IFT52	51098	broad.mit.edu	37	chr20	42249677	42249677	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttaactcatctgtaagacaGatggaacgaaggaatgattt	9	6	2	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42249677	C	C	42249677	1	2	226	0	1	0	0	0	0	0	0	0	7631	957	33	4		4	IFT52	20	42249677	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	16771	42249677	20775843	1408	172163											
TOX2	84969	broad.mit.edu	37	chr20	42601996	42601996	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agagctgcttctccctctctCtctattctagtttgatggtg	8	11	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	42601996	G	G	42601996	1	3	226	0	1	0	0	0	0	0	0	0	16502	928	32	4		4	TOX2	20	42601996	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	352319	42601996	20423524	1409	172164											
RIMS4	140730	broad.mit.edu	37	chr20	43386190	43386190	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caattccacataagacatcaGagttgggacagggggtcccc	11	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43386190	T	T	43386190	1	4	226	0	1	0	0	0	0	0	0	0	13481	957	33	3		3	RIMS4	20	43386190	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	784194	43386190	19639330	1410	172165											
WFDC13	164237	broad.mit.edu	37	chr20	44333264	44333264	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatatccaggtctgatcCtagagctgctggtgggagcc	12	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44333264	A	A	44333264	1	1	226	0	1	0	0	0	0	0	0	0	17478	696	24	2		2	WFDC13	20	44333264	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	947074	44333264	18692256	1411	172166											
TNNC2	7125	broad.mit.edu	37	chr20	44453089	44453089	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcctgagcccagccgctgCcgcctctccccaccatcccc	8	23	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44453089	A	A	44453089	1	1	226	0	1	0	0	0	0	0	0	0	16448	754	26	3		3	TNNC2	20	44453089	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	119825	44453089	18572431	1412	172167											
NCOA3	8202	broad.mit.edu	37	chr20	46275899	46275899	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcagaaggcaggattatatgGacagacatacccagcacagg	11	9	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46275899	T	T	46275899	3	4	226	1	0	0	0	0	1	0	0	0	10325	1174	41	3	3427	3	NCOA3	20	46275899	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1822810	46275899	16749621	1413	172168											
DDX27	55661	broad.mit.edu	37	chr20	47838011	47838011	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcccattgtgctgggcagacGacaaaaagctttggggaaga	14	8	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47838011	A	A	47838011	3	1	226	1	0	0	0	0	1	0	0	0	4387	1058	37	4	215	4	DDX27	20	47838011	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1562112	47838011	15187509	1414	172169											
ZNFX1	57169	broad.mit.edu	37	chr20	47879868	47879868	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcccccaggatgaccccTacctgcactggtccattcat	8	16	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47879868	C	C	47879868	1	2	226	0	1	0	0	0	0	0	0	0	18334	1537	53	5		5	ZNFX1	20	47879868	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	41857	47879868	15145652	1415	172170											
ATP9A	10079	broad.mit.edu	37	chr20	50241647	50241647	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctgctgctcctcccaccCtttccccctgtgatctccct	4	22	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50241647	A	A	50241647	1	1	226	0	1	0	0	0	0	0	0	0	1202	696	24	2		2	ATP9A	20	50241647	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2361779	50241647	12783873	1416	172171											
TSHZ2	128553	broad.mit.edu	37	chr20	51872088	51872088	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcaacccactcagcgcCctgcagtccgtcctgaacaa	7	17	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51872088	A	A	51872088	2	1	226	1	0	0	0	0	0	0	0	1	16749	610	22	2		2	TSHZ2	20	51872088	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	1630441	51872088	11153432	1417	172172											
MC3R	4159	broad.mit.edu	37	chr20	54823640	54823641	+	5'Flank	DEL	CT	-	-													ctactaactagctactctccCtctctctctctcttccccct							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	54823641	-	-	54823640	6	5	226	0	1	1	0	1	0	0	0	0	9458	696	24	0		0	MC3R	20	54823640	5'Flank	DEL	CT	TCGA-91-6829-01A-21D-1855-08	2951552	54823640	8201880	1418	172173											
CASS4	57091	broad.mit.edu	37	chr20	55033542	55033542	+	Frame_Shift_Del	DEL	G	-	-													ctcagcagcagccagcccgcGgagatcatcactcagagcaa					rs143052505		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55033542	-	-	55033542	7	5	226	1	0	1	0	1	0	0	0	0	2709	1103	39	0	2122	0	CASS4	20	55033542	Frame_Shift_Del	DEL	G	TCGA-91-6829-01A-21D-1855-08	209902	55033542	7991978	1419	172174											
C20orf107	388799	broad.mit.edu	37	chr20	55111182	55111182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttggaactgtgtcaaaacCagcaaagtccatgatattat	7	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55111182	A	A	55111182	1	1	226	0	1	0	0	0	0	0	0	0	2099	609	21	2		2	C20orf107	20	55111182	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	77640	55111182	7914338	1420	172175											
BMP7	655	broad.mit.edu	37	chr20	55777710	55777710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagagacacgggcttcGcgttagccaggtcacagctc	15	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55777710	T	T	55777710	1	4	226	0	1	0	0	0	0	0	0	0	1471	1102	38	3		3	BMP7	20	55777710	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	666528	55777710	7247810	1421	172176											
SPO11	23626	broad.mit.edu	37	chr20	55903684	55903684	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccccagtggattcggatgAaaactgataataaaatcagg	10	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55903684	G	G	55903684	1	3	226	0	1	0	0	0	0	0	0	0	15195	261	9	5		5	SPO11	20	55903684	5'Flank	SNP	A	TCGA-91-6829-01A-21D-1855-08	125974	55903684	7121836	1422	172177											
C20orf85	128602	broad.mit.edu	37	chr20	56728509	56728509	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgcagaaccactgccCagtcaatgttcgtggagaat	11	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56728509	T	T	56728509	1	4	226	0	1	0	0	0	0	0	0	0	2142	609	21	4		4	C20orf85	20	56728509	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	824825	56728509	6297011	1423	172178											
C20orf85	128602	broad.mit.edu	37	chr20	56728613	56728613	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaggaaataccgtctgAaggctgaatcggaagcacgg	12	8	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56728613	T	T	56728613	4	4	226	1	0	0	0	0	0	1	0	0	2142	247	9	5	88	5	C20orf85	20	56728613	Nonsense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	104	56728613	6296907	1424	172179											
STX16	8675	broad.mit.edu	37	chr20	57248821	57248821	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aactattttcaaataatcaaGaattggtaagagggttcttt	7	4	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57248821	T	T	57248821	1	4	226	0	1	0	0	0	0	0	0	0	15457	957	33	3		3	STX16	20	57248821	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	520208	57248821	5776699	1425	172180											
GNAS	2778	broad.mit.edu	37	chr20	57415891	57415891	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggacccatccccatccggCgtcactaatggaggacgccg	12	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57415891	G	G	57415891	3	3	226	1	0	0	0	0	1	0	0	0	6574	768	27	4	732	4	GNAS	20	57415891	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	167070	57415891	5609629	1426	172181											
ZNF831	128611	broad.mit.edu	37	chr20	57768489	57768489	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcctgtgggcccagactgtCctgagatggcccagcagggg	16	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57768489	A	A	57768489	2	1	226	1	0	0	0	0	0	0	0	1	18314	842	30	3		3	ZNF831	20	57768489	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	352598	57768489	5257031	1427	172182											
ZNF831	128611	broad.mit.edu	37	chr20	57829259	57829259	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtttgtatttctctgccaGtgagaacagatcacatagcc	8	11	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57829259	T	T	57829259	3	4	226	1	0	0	0	0	1	0	0	0	18314	1029	36	3	4513	3	ZNF831	20	57829259	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	60770	57829259	5196261	1428	172183											
PPP1R3D	5509	broad.mit.edu	37	chr20	58514485	58514485	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgctgcaggcgctcgccaaAgtcggcggcctcgacgggcg	16	16	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	58514485	C	C	58514485	3	2	226	1	0	0	0	0	1	0	0	0	12475	72	3	5	401	5	PPP1R3D	20	58514485	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	685226	58514485	4511035	1429	172184											
LAMA5	3911	broad.mit.edu	37	chr20	60887174	60887174	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attccagacaccccagtcccAactgctccgacggccaccgc	7	20	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60887174	G	G	60887174	1	3	226	0	1	0	0	0	0	0	0	0	8681	145	5	5		5	LAMA5	20	60887174	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	2372689	60887174	2138346	1430	172185											
ARFGAP1	55738	broad.mit.edu	37	chr20	61915135	61915135	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatggtgggttcgaaggcGctgctggttactaatgccgc	14	11	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61915135	T	T	61915135	1	4	226	0	1	0	0	0	0	0	0	0	851	1102	38	3		3	ARFGAP1	20	61915135	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1027961	61915135	1110385	1431	172186											
CHRNA4	1137	broad.mit.edu	37	chr20	61978135	61978135	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcaggaagaggcccaccgtCcccagcaggcagacgatgat	14	13	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61978135	T	T	61978135	2	4	226	1	0	0	0	0	0	0	0	1	3416	842	30	4		4	CHRNA4	20	61978135	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	63000	61978135	1047385	1432	172187											
SRMS	6725	broad.mit.edu	37	chr20	62172184	62172184	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaggactcaggggtggcatCtgtggatggcgtgcagcttc	17	8	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62172184	A	A	62172184	3	1	226	1	0	0	0	0	1	0	0	0	15270	913	32	3	16	3	SRMS	20	62172184	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	194049	62172184	853336	1433	172188											
PRIC285	85441	broad.mit.edu	37	chr20	62192981	62192981	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggttcggcctcccctccCgggggctcttcctgagcagc	12	17	2	1	rs143065747		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62192981	A	A	62192981	3	1	226	1	0	0	0	0	1	0	0	0	12591	652	23	1	1172	1	PRIC285	20	62192981	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	20797	62192981	832539	1434	172189											
PRIC285	85441	broad.mit.edu	37	chr20	62200859	62200859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaaggtgccgaacgaggCagcctgcacacgcactccca	10	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62200859	A	A	62200859	3	1	226	1	0	0	0	0	1	0	0	0	12591	710	25	3	7306	3	PRIC285	20	62200859	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	7878	62200859	824661	1435	172190											
RTEL1	51750	broad.mit.edu	37	chr20	62305162	62305162	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cctacttgtggccttttacaGaccccaggccaaggctttgg	10	13	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62305162	A	A	62305162	1	1	226	0	1	0	0	0	0	0	0	0	13831	957	33	4		4	RTEL1	20	62305162	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	104303	62305162	720358	1436	172191											
ZBTB46	140685	broad.mit.edu	37	chr20	62384247	62384247	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccgcgaggcgtcagcagGgcttgggatgtaccgccctg	16	13	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62384247	T	T	62384247	1	4	226	0	1	0	0	0	0	0	0	0	17673	1247	43	2		2	ZBTB46	20	62384247	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	79085	62384247	641273	1437	172192											
MYT1	4661	broad.mit.edu	37	chr20	62839102	62839102	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggtggaagaggacttgGgccaggcggccaagccaggt	17	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62839102	T	T	62839102	3	4	226	1	0	0	0	0	1	0	0	0	10200	1232	43	2	571	2	MYT1	20	62839102	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	454855	62839102	186418	1438	172193											
MYT1	4661	broad.mit.edu	37	chr20	62854555	62854555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcgggtccgtctggcCtgggtgcttcgtggtgggtc	17	12	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62854555	A	A	62854555	1	1	226	0	1	0	0	0	0	0	0	0	10200	696	24	2		2	MYT1	20	62854555	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	15453	62854555	170965	1439	172194											
PCMTD2	55251	broad.mit.edu	37	chr20	62904645	62904645	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaccattaaaaagattattCatcaggaaactgtgagcaaa	7	7	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62904645	G	G	62904645	3	3	226	1	0	0	0	0	1	0	0	0	11681	826	29	4	796	4	PCMTD2	20	62904645	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	50090	62904645	120875	1440	172195											
TPTE	7179	broad.mit.edu	37	chr21	10910351	10910351	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcatcatacagaggtagacCgtcgaatacatcaattaata	6	8	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10910351	G	G	10910351	3	3	226	1	0	0	0	0	1	0	0	0	16554	652	23	4	262	4	TPTE	21	10910351	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08		10910351	37219544	1441	172196											
USP25	29761	broad.mit.edu	37	chr21	17205574	17205574	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtggtaataattcataGtttaaattctatttgaaatg	7	3	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17205574	T	T	17205574	1	4	226	0	1	0	0	0	0	0	0	0	17182	1044	36	3		3	USP25	21	17205574	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6295223	17205574	30924321	1442	172197											
NCAM2	4685	broad.mit.edu	37	chr21	22790677	22790677	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaattaaaaatatatgGtaaggagttgttgggtaaaa	10	0	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22790677	T	T	22790677	1	4	226	0	1	0	0	0	0	0	0	0	10298	1276	44	3		3	NCAM2	21	22790677	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	5585103	22790677	25339218	1443	172198											
JAM2	58494	broad.mit.edu	37	chr21	27066364	27066364	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagagaccataagcatcacCttcctggcaatctcctggcc	7	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27066364	A	A	27066364	1	1	226	0	1	0	0	0	0	0	0	0	8013	696	24	2		2	JAM2	21	27066364	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4275687	27066364	21063531	1444	172199											
CYYR1	116159	broad.mit.edu	37	chr21	27852829	27852829	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtagagctccatgattatagGacaagtgttttcttacaaat	8	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27852829	T	T	27852829	1	4	226	0	1	0	0	0	0	0	0	0	4244	1189	41	3		3	CYYR1	21	27852829	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	786465	27852829	20277066	1445	172200											
GRIK1	2897	broad.mit.edu	37	chr21	30961211	30961211	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccctttgtcattctggGccccatatttgccatcggga	8	14	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30961211	T	T	30961211	3	4	226	1	0	0	0	0	1	0	0	0	6839	1203	42	3	1427	3	GRIK1	21	30961211	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3108382	30961211	17168684	1446	172201											
GRIK1	2897	broad.mit.edu	37	chr21	31045363	31045363	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aatatcacatagaactccttGcctttcttcatctccttgag	4	12	4	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31045363	C	C	31045363	2	2	226	1	0	0	0	0	0	0	0	1	6839	1306	46	4		4	GRIK1	21	31045363	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	84152	31045363	17084532	1447	172202											
KRTAP6-3	337968	broad.mit.edu	37	chr21	31964947	31964947	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgtggctatggaggcctGggctgtggctatggctcctt	16	9	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31964947	A	A	31964947	2	1	226	1	0	0	0	0	0	0	0	1	8643	1335	47	4		4	KRTAP6-3	21	31964947	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	919584	31964947	16164948	1448	172203											
KRTAP11-1	337880	broad.mit.edu	37	chr21	32253288	32253288	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagggacaagcagcatgcTggaagatcctggaaacagct	12	9	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32253288	C	C	32253288	1	2	226	0	1	0	0	0	0	0	0	0	8588	1595	55	5		5	KRTAP11-1	21	32253288	3'UTR	SNP	T	TCGA-91-6829-01A-21D-1855-08	288341	32253288	15876607	1449	172204											
TIAM1	7074	broad.mit.edu	37	chr21	32526506	32526506	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatgaaaaccagcagacaCaccaacttcactcctttacg	4	13	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32526506	A	A	32526506	1	1	226	0	1	0	0	0	0	0	0	0	16013	493	17	3		3	TIAM1	21	32526506	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	273218	32526506	15603389	1450	172205											
MRAP	56246	broad.mit.edu	37	chr21	33671311	33671312	+	Missense_Mutation	DNP	CA	AT	AT													cgggaccaacgcctctgcccCatactacagctatgaatact							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	33671312	AT	AT	33671311	3	1	226	1	0	0	0	0	1	0	0	0	9847	594	21	2	31	2	MRAP	21	33671311	Missense_Mutation	DNP	CA	TCGA-91-6829-01A-21D-1855-08	1144805	33671311	14458584	1451	172206											
GCFC1	94104	broad.mit.edu	37	chr21	34117199	34117199	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtctgtgttgtagaaaaAgggtcccacatattttcagc	10	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34117199	G	G	34117199	2	3	226	1	0	0	0	0	0	0	0	1	6351	59	3	5		5	GCFC1	21	34117199	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	445888	34117199	14012696	1452	172207											
DOPEY2	9980	broad.mit.edu	37	chr21	37572692	37572692	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccggtgctgctcaccctGtacgagaagtacttcctccc	10	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37572692	A	A	37572692	2	1	226	1	0	0	0	0	0	0	0	1	4748	1364	48	4		4	DOPEY2	21	37572692	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	3455493	37572692	10557203	1453	172208											
LCA5L	150082	broad.mit.edu	37	chr21	40800015	40800015	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaacaataaaactgagtAtgaaccacttcaaacactag	6	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40800015	G	G	40800015	1	3	226	0	1	0	0	0	0	0	0	0	8729	464	16	5		5	LCA5L	21	40800015	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3227323	40800015	7329880	1454	172209											
RIPK4	54101	broad.mit.edu	37	chr21	43161678	43161678	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctcacgtccacgcctcGgcgcagcaggatgcgcacga	13	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43161678	A	A	43161678	4	1	226	1	0	0	0	0	0	1	0	0	13494	1124	39	4	683	4	RIPK4	21	43161678	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2361663	43161678	4968217	1455	172210											
UBASH3A	53347	broad.mit.edu	37	chr21	43857644	43857644	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatcagctctgtgtttgcCtccccagccctccgctgtgt	9	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43857644	T	T	43857644	2	4	226	1	0	0	0	0	0	0	0	1	16965	668	24	4		4	UBASH3A	21	43857644	Silent	SNP	C	TCGA-91-6829-01A-21D-1855-08	695966	43857644	4272251	1456	172211											
WDR4	10785	broad.mit.edu	37	chr21	44299681	44299681	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaccggtcggtgacgccaGgcgcagacgccgagagatga	16	13	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44299681	T	T	44299681	1	4	226	0	1	0	0	0	0	0	0	0	17420	1015	35	2		2	WDR4	21	44299681	5'Flank	SNP	G	TCGA-91-6829-01A-21D-1855-08	442037	44299681	3830214	1457	172212											
SIK1	150094	broad.mit.edu	37	chr21	44845963	44845963	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaagttgcctttgcccagGgtccgctcgatgtcgtaaaa	12	11	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44845963	T	T	44845963	2	4	226	1	0	0	0	0	0	0	0	1	14430	1219	43	2		2	SIK1	21	44845963	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	546282	44845963	3283932	1458	172213											
TRAPPC10	7109	broad.mit.edu	37	chr21	45472438	45472438	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgggtagtaataaatAtttactcagcaatctcgagt	7	8	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45472438	T	T	45472438	1	4	226	0	1	0	0	0	0	0	0	0	16581	464	16	5		5	TRAPPC10	21	45472438	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	626475	45472438	2657457	1459	172214											
C21orf29	54084	broad.mit.edu	37	chr21	45949888	45949888	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgctgctggggaaggaccCgctgaggaggcgaccactga	17	12	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45949888	A	A	45949888	1	1	226	0	1	0	0	0	0	0	0	0	2146	667	23	1		1	C21orf29	21	45949888	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	477450	45949888	2180007	1460	172215											
COL6A2	1292	broad.mit.edu	37	chr21	47541557	47541557	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccctcccccagcaggaCgtattaggggttcggggcag	15	13	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47541557	G	G	47541557	1	3	226	0	1	0	0	0	0	0	0	0	3732	551	19	4		4	COL6A2	21	47541557	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1591669	47541557	588338	1461	172216											
FTCD	10841	broad.mit.edu	37	chr21	47570482	47570482	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctggactaggaagctcaTcctgcctggccctgccagtc	11	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47570482	C	C	47570482	1	2	226	0	1	0	0	0	0	0	0	0	6141	1450	50	5		5	FTCD	21	47570482	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	28925	47570482	559413	1462	172217											
DIP2A	23181	broad.mit.edu	37	chr21	47910612	47910612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcggcccaccgcctcgaGggatgagcgcttccggtcag	14	15	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47910612	T	T	47910612	3	4	226	1	0	0	0	0	1	0	0	0	4567	1000	35	2	273	2	DIP2A	21	47910612	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	340130	47910612	219283	1463	172218											
ATP6V1E1	529	broad.mit.edu	37	chr22	18102169	18102169	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactaacaatattatttagCaaagcaaaacaatatggaaa	4	5	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18102169	A	A	18102169	1	1	226	0	1	0	0	0	0	0	0	0	1187	725	25	3		3	ATP6V1E1	22	18102169	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08		18102169	33202397	1464	172219											
SEPT5	5413	broad.mit.edu	37	chr22	19707634	19707634	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccagtggccccttccccGtagagcgcatcagccagacg	10	17	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19707634	T	T	19707634	1	4	226	0	1	0	0	0	0	0	0	0	14180	1160	40	3		3	SEPT5	22	19707634	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1605465	19707634	31596932	1465	172220											
GNB1L	54584	broad.mit.edu	37	chr22	19776217	19776217	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgccctcctcgtctcccgggAagggagtgggtgagtcatgc	15	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19776217	G	G	19776217	1	3	226	0	1	0	0	0	0	0	0	0	6580	261	9	5		5	GNB1L	22	19776217	3'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	68583	19776217	31528349	1466	172221											
BCR	613	broad.mit.edu	37	chr22	23541548	23541548	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccggcccttgtgagcccCgcggttgcttatttatcctg	10	15	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23541548	T	T	23541548	1	4	226	0	1	0	0	0	0	0	0	0	1393	667	23	4		4	BCR	22	23541548	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	3765331	23541548	27763018	1467	172222											
C22orf43	51233	broad.mit.edu	37	chr22	23967031	23967031	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatatattaaagctagcaaGtttgtttctcagaaagtgag	8	5	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23967031	C	C	23967031	1	2	226	0	1	0	0	0	0	0	0	0	2172	1044	36	4		4	C22orf43	22	23967031	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	425483	23967031	27337535	1468	172223											
GGT5	2687	broad.mit.edu	37	chr22	24629658	24629658	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctgcattatgagatggaCtctgggctaacacagggaca	11	9	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24629658	G	G	24629658	1	3	226	0	1	0	0	0	0	0	0	0	6426	580	20	4		4	GGT5	22	24629658	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	662627	24629658	26674908	1469	172224											
APOL4	80832	broad.mit.edu	37	chr22	36587462	36587462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattcgcaatcatttttgtGgcttcgtcaaaatcaagtgc	7	9	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36587462	T	T	36587462	2	4	226	1	0	0	0	0	0	0	0	1	810	1348	47	2		2	APOL4	22	36587462	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	11957804	36587462	14717104	1470	172225											
IL2RB	3560	broad.mit.edu	37	chr22	37524962	37524962	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttcctctggactctcaaCagctcctaactcctcctcct	3	20	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37524962	A	A	37524962	1	1	226	0	1	0	0	0	0	0	0	0	7757	493	17	3		3	IL2RB	22	37524962	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	937500	37524962	13779604	1471	172226											
PLA2G6	8398	broad.mit.edu	37	chr22	38524131	38524131	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgggttgctggctgcCtagaggctgacaactccggc	14	11	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38524131	A	A	38524131	1	1	226	0	1	0	0	0	0	0	0	0	12103	696	24	2		2	PLA2G6	22	38524131	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	999169	38524131	12780435	1472	172227											
DNAL4	10126	broad.mit.edu	37	chr22	39178760	39178760	+	5'UTR	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttccactgtgaccactggAggagagtggggctttcagga	14	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39178760	C	C	39178760	1	2	226	0	1	0	0	0	0	0	0	0	4698	319	11	5		5	DNAL4	22	39178760	5'UTR	SNP	A	TCGA-91-6829-01A-21D-1855-08	654629	39178760	12125806	1473	172228											
APOBEC3G	60489	broad.mit.edu	37	chr22	39477286	39477286	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgcttaagtgtctgtgatGggtccttcccacacatacct	8	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39477286	A	A	39477286	1	1	226	0	1	0	0	0	0	0	0	0	796	1363	47	4		4	APOBEC3G	22	39477286	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	298526	39477286	11827280	1474	172229											
ENTHD1	150350	broad.mit.edu	37	chr22	40283671	40283671	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	actagagggaccccaagggtCgttagaagttgcttccctga	12	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40283671	A	A	40283671	3	1	226	1	0	0	0	0	1	0	0	0	5179	884	31	3	1765	3	ENTHD1	22	40283671	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	806385	40283671	11020895	1475	172230											
TNRC6B	23112	broad.mit.edu	37	chr22	40444876	40444876	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctttctgacagagtttcGctctgtcgcccaggctggag	12	11	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40444876	T	T	40444876	1	4	226	0	1	0	0	0	0	0	0	0	16464	1102	38	3		3	TNRC6B	22	40444876	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	161205	40444876	10859690	1476	172231											
MOV10L1	54456	broad.mit.edu	37	chr22	50591676	50591676	+	Intron	DEL	C	-	-													tgtcttgaatccgtaggtgaCcgtgtcgggtaaggacagta							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	50591676	-	-	50591676	6	5	226	0	1	1	0	1	0	0	0	0	9813	522	18	0		0	MOV10L1	22	50591676	Intron	DEL	C	TCGA-91-6829-01A-21D-1855-08	10146800	50591676	712890	1477	172232											
PLXNB2	23654	broad.mit.edu	37	chr22	50727320	50727320	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgtgcgcgagggcaggCcggtgagggtacgggccttg	20	10	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50727320	A	A	50727320	1	1	226	0	1	0	0	0	0	0	0	0	12219	754	26	3		3	PLXNB2	22	50727320	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	135644	50727320	577246	1478	172233											
IL3RA	3563	broad.mit.edu	37	chrX	1460574	1460574	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccttcattacccgcaaccCagtttcacagccagtccccg	5	18	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1460574	A	A	1460574	1	1	226	0	1	0	0	0	0	0	0	0	7765	609	21	2		2	IL3RA	23	1460574	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08		1460574	153809986	1479	172234											
XG	7499	broad.mit.edu	37	chrX	2726122	2726122	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaaattccctgaaaacaggGatctgtgtgctgtgttcaca	10	8	2	1	rs55930640		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2726122	T	T	2726122	1	4	226	0	1	0	0	0	0	0	0	0	17554	1189	41	3		3	XG	23	2726122	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1265548	2726122	152544438	1480	172235											
CLCN4	1183	broad.mit.edu	37	chrX	10181855	10181855	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcatttgggaaagaaggcAtctacgaggcccacatccac	10	11	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10181855	G	G	10181855	3	3	226	1	0	0	0	0	1	0	0	0	3496	217	8	5	1745	5	CLCN4	23	10181855	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	7455733	10181855	145088705	1481	172236											
ARHGAP6	395	broad.mit.edu	37	chrX	11204576	11204576	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgacacagagccgtgaaCataaagtacagatagccaaa	9	8	0	4			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11204576	A	A	11204576	1	1	226	0	1	0	0	0	0	0	0	0	889	493	17	3		3	ARHGAP6	23	11204576	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	1022721	11204576	144065984	1482	172237											
PPEF1	5475	broad.mit.edu	37	chrX	18807174	18807174	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagaaagaatcccacctgggActgaagtctctgtatgtggc	11	9	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18807174	T	T	18807174	1	4	226	0	1	0	0	0	0	0	0	0	12403	290	10	5		5	PPEF1	23	18807174	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	7602598	18807174	136463386	1483	172238											
CNKSR2	22866	broad.mit.edu	37	chrX	21609267	21609267	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaatggaaaaaatattgGtttgtcctaaaggatgcatc	9	5	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21609267	T	T	21609267	3	4	226	1	0	0	0	0	1	0	0	0	3639	1270	44	3	1843	3	CNKSR2	23	21609267	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	2802093	21609267	133661293	1484	172239											
PDK3	5165	broad.mit.edu	37	chrX	24551979	24551979	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttaaataataaaatttgGgttactatttcacttgagaa	6	3	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24551979	T	T	24551979	1	4	226	0	1	0	0	0	0	0	0	0	11771	1247	43	2		2	PDK3	23	24551979	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	2942712	24551979	130718581	1485	172240											
DCAF8L1	139425	broad.mit.edu	37	chrX	27999166	27999166	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcctccctttctgtctcctCtcccactaacgggtaaccaa	4	18	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27999166	A	A	27999166	4	1	226	1	0	0	0	0	0	1	0	0	4310	922	32	3	1520	3	DCAF8L1	23	27999166	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	3447187	27999166	127271394	1486	172241											
GK	2710	broad.mit.edu	37	chrX	30747008	30747008	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accctccaagtagacctgtgGcttaaaataaagaaaatgca	7	9	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30747008	T	T	30747008	1	4	226	0	1	0	0	0	0	0	0	0	6484	1218	42	3		3	GK	23	30747008	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	2747842	30747008	124523552	1487	172242											
DMD	1756	broad.mit.edu	37	chrX	32632526	32632526	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttagccagtcattcaacTctttcagtttctgattctgg	7	9	6	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32632526	A	A	32632526	3	1	226	1	0	0	0	0	1	0	0	0	4620	1551	54	5	10196	5	DMD	23	32632526	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1885518	32632526	122638034	1488	172243											
LANCL3	347404	broad.mit.edu	37	chrX	37526534	37526535	+	Splice_Site	DNP	GG	TT	TT													atatctttgatgttttcacaGgaattgcctatctgtttgcc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	37526535	TT	TT	37526534	5	4	226	1	0	0	0	0	0	0	1	0	8694	1014	35	2	909	2	LANCL3	23	37526534	Splice_Site	DNP	GG	TCGA-91-6829-01A-21D-1855-08	4894008	37526534	117744026	1489	172244											
ZNF630	57232	broad.mit.edu	37	chrX	47918444	47918444	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaaaaggccttcccacagtCagtacacacataaggttttt	8	10	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47918444	A	A	47918444	3	1	226	1	0	0	0	0	1	0	0	0	18181	826	29	3	590	3	ZNF630	23	47918444	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	10391910	47918444	107352116	1490	172245											
SSX3	10214	broad.mit.edu	37	chrX	48206760	48206760	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agggagcatccctggatataTacagggcagggagtagaaag	15	6	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48206760	C	C	48206760	1	2	226	0	1	0	0	0	0	0	0	0	15323	1421	49	5		5	SSX3	23	48206760	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	288316	48206760	107063800	1491	172246											
FTSJ1	24140	broad.mit.edu	37	chrX	48339578	48339578	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgagtatatgcaggcccAgctcctcctagctgtgagta	11	10	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48339578	C	C	48339578	3	2	226	1	0	0	0	0	1	0	0	0	6147	188	7	5	419	5	FTSJ1	23	48339578	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	132818	48339578	106930982	1492	172247											
CACNA1F	778	broad.mit.edu	37	chrX	49067761	49067761	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccgtgacggtggtggtggTtgtgaggaaatggttctcac	16	8	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49067761	C	C	49067761	1	2	226	0	1	0	0	0	0	0	0	0	2569	1740	60	5		5	CACNA1F	23	49067761	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	728183	49067761	106202799	1493	172248											
FAAH2	158584	broad.mit.edu	37	chrX	57420778	57420778	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accacctgatatttcccaacAggctggtgcttcaggcgttc	9	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57420778	T	T	57420778	1	4	226	0	1	0	0	0	0	0	0	0	5400	203	7	5		5	FAAH2	23	57420778	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	8353017	57420778	97849782	1494	172249											
MTMR8	55613	broad.mit.edu	37	chrX	63526090	63526090	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttatgatagttctcaatGcccacactgcttgctcacaa	5	13	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63526090	T	T	63526090	1	4	226	0	1	0	0	0	0	0	0	0	10043	1334	46	3		3	MTMR8	23	63526090	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	6105312	63526090	91744470	1495	172250											
EFNB1	1947	broad.mit.edu	37	chrX	68058452	68058452	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctgaccatcttcttccttCtgggcaggttcctgagtggg	13	11	3	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68058452	T	T	68058452	1	4	226	0	1	0	0	0	0	0	0	0	4995	928	32	4		4	EFNB1	23	68058452	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4532362	68058452	87212108	1496	172251											
SLC7A3	84889	broad.mit.edu	37	chrX	70145656	70145656	+	3'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	accagacagcatttaggtgtGacgatgtcaaactgagtgga	12	7	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70145656	T	T	70145656	1	4	226	0	1	0	0	0	0	0	0	0	14812	1305	45	3		3	SLC7A3	23	70145656	3'UTR	SNP	G	TCGA-91-6829-01A-21D-1855-08	2087204	70145656	85124904	1497	172252											
CDX4	1046	broad.mit.edu	37	chrX	72667712	72667712	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcttagctgaggcgaccCctatatggctggctggccta	14	11	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667712	A	A	72667712	1	1	226	0	1	0	0	0	0	0	0	0	3214	638	22	2		2	CDX4	23	72667712	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	2522056	72667712	82602848	1498	172253											
ATP7A	538	broad.mit.edu	37	chrX	77243539	77243539	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagtcacatatgtctgcaTatataactttaccattcttg	4	10	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	77243539	C	C	77243539	1	2	226	0	1	0	0	0	0	0	0	0	1194	1421	49	5		5	ATP7A	23	77243539	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	4575827	77243539	78027021	1499	172254											
ATP7A	538	broad.mit.edu	37	chrX	77286895	77286895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtatcttaatttttttaCaggtaaaggtagtggtattt	8	2	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77286895	T	T	77286895	1	4	226	0	1	0	0	0	0	0	0	0	1194	493	17	4		4	ATP7A	23	77286895	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	43356	77286895	77983665	1500	172255											
GPR174	84636	broad.mit.edu	37	chrX	78426763	78426763	+	Frame_Shift_Del	DEL	G	-	-													tgaatcatgactggccatttGggcctggtctctgcatgttc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	78426763	-	-	78426763	7	5	226	1	0	1	0	1	0	0	0	0	6737	1348	47	0	261	0	GPR174	23	78426763	Frame_Shift_Del	DEL	G	TCGA-91-6829-01A-21D-1855-08	1139868	78426763	76843797	1501	172256											
RPS6KA6	27330	broad.mit.edu	37	chrX	83403148	83403148	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacctaatagaaaattgaaCaaaaaaaaaaaggaaaattc	4	4	0	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83403148	A	A	83403148	1	1	226	0	1	0	0	0	0	0	0	0	13766	493	17	3		3	RPS6KA6	23	83403148	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	4976385	83403148	71867412	1502	172257											
POF1B	79983	broad.mit.edu	37	chrX	84537353	84537353	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagagttagtttacagGctgcatgagaaaataacttt	9	4	0	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84537353	T	T	84537353	1	4	226	0	1	0	0	0	0	0	0	0	12277	1218	42	3		3	POF1B	23	84537353	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	1134205	84537353	70733207	1503	172258											
PCDH11X	27328	broad.mit.edu	37	chrX	91873528	91873528	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgcattgtgccacagcccAccaccgatacaggtgtctgc	9	15	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91873528	G	G	91873528	2	3	226	1	0	0	0	0	0	0	0	1	11602	146	6	5		5	PCDH11X	23	91873528	Silent	SNP	A	TCGA-91-6829-01A-21D-1855-08	7336175	91873528	63397032	1504	172259											
NAP1L3	4675	broad.mit.edu	37	chrX	92926929	92926929	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcctcatccaggatagcatCttctcgtggttccagcttcc	8	14	3	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	92926929	T	T	92926929	3	4	226	1	0	0	0	0	1	0	0	0	10252	913	32	4	149	4	NAP1L3	23	92926929	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	1053401	92926929	62343631	1505	172260											
DIAPH2	1730	broad.mit.edu	37	chrX	96200587	96200587	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagctgcagagttttcaaaGaaggtaagcttataaaatat	8	4	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	96200587	C	C	96200587	3	2	226	1	0	0	0	0	1	0	0	0	4559	933	33	4	1560	4	DIAPH2	23	96200587	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	3273658	96200587	59069973	1506	172261											
NXF3	56000	broad.mit.edu	37	chrX	102334690	102334690	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcggagctgtgatactcaCggggctgagtcctcaggatt	15	9	2	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102334690	T	T	102334690	5	4	226	1	0	0	0	0	0	0	1	0	10880	550	19	4	462	4	NXF3	23	102334690	Splice_Site	SNP	C	TCGA-91-6829-01A-21D-1855-08	6134103	102334690	52935870	1507	172262											
TCEAL5	340543	broad.mit.edu	37	chrX	102529649	102529649	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtgcactcccacccttAcattccttcctttccttttc	3	18	0	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102529649	G	G	102529649	1	3	226	0	1	0	0	0	0	0	0	0	15796	406	14	5		5	TCEAL5	23	102529649	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	194959	102529649	52740911	1508	172263											
GLRA4	441509	broad.mit.edu	37	chrX	102962361	102962361	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatgccagaaccttccattgGacctccatctcttgcctgca	6	15	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102962361	T	T	102962361	3	4	226	1	0	0	0	0	1	0	0	0	6521	1174	41	3	91	3	GLRA4	23	102962361	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	432712	102962361	52308199	1509	172264											
PLP1	5354	broad.mit.edu	37	chrX	103041825	103041825	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaagaacgtggtgcccagCtggcttagcctcacctttca	11	12	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103041825	A	A	103041825	1	1	226	0	1	0	0	0	0	0	0	0	12199	812	28	3		3	PLP1	23	103041825	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	79464	103041825	52228735	1510	172265											
MORC4	79710	broad.mit.edu	37	chrX	106199661	106199661	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaacttatattttctgTtggggaaaatgttgtgtgag	10	5	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	106199661	C	C	106199661	1	2	226	0	1	0	0	0	0	0	0	0	9798	1740	60	5		5	MORC4	23	106199661	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	3157836	106199661	49070899	1511	172266											
TEX13B	56156	broad.mit.edu	37	chrX	107225239	107225239	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacctcctcccaggataagGatatattctcgaagtagaac	7	12	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107225239	A	A	107225239	3	1	226	1	0	0	0	0	1	0	0	0	15899	1174	41	4	827	4	TEX13B	23	107225239	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1025578	107225239	48045321	1512	172267											
COL4A6	1288	broad.mit.edu	37	chrX	107430488	107430488	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaaccccttttcacctgGgaagccctgtccaccatcac	7	16	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107430488	T	T	107430488	3	4	226	1	0	0	0	0	1	0	0	0	3727	1232	43	2	3375	2	COL4A6	23	107430488	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	205249	107430488	47840072	1513	172268											
COL4A5	1287	broad.mit.edu	37	chrX	107824026	107824026	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctaaatgtgtgtgtgtgtGattttattctttcttcctac	7	6	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107824026	C	C	107824026	1	2	226	0	1	0	0	0	0	0	0	0	3726	1305	45	4		4	COL4A5	23	107824026	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	393538	107824026	47446534	1514	172269											
COL4A5	1287	broad.mit.edu	37	chrX	107924059	107924059	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccattttctgatttgactgGgtaaaggttgtagccctgtt	11	7	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107924059	C	C	107924059	1	2	226	0	1	0	0	0	0	0	0	0	3726	1247	43	4		4	COL4A5	23	107924059	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	100033	107924059	47346501	1515	172270											
ZCCHC12	170261	broad.mit.edu	37	chrX	117959580	117959580	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aattggtgtttggggagtctGaaagcagtgtgactgcccat	14	6	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117959580	T	T	117959580	4	4	226	1	0	0	0	0	0	1	0	0	17707	1291	45	3	375	3	ZCCHC12	23	117959580	Nonsense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	10035521	117959580	37310980	1516	172271											
NKRF	55922	broad.mit.edu	37	chrX	118723347	118723347	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcataacaagctcgtaatGgcccacttggccttcctgtt	9	12	0	0	rs144536074		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118723347	T	T	118723347	3	4	226	1	0	0	0	0	1	0	0	0	10542	1348	47	2	35	2	NKRF	23	118723347	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	763767	118723347	36547213	1517	172272											
STAG2	10735	broad.mit.edu	37	chrX	123195708	123195708	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtcatcctcccgtgggaaGagggacaggaaaaagggtat	14	7	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123195708	A	A	123195708	3	1	226	1	0	0	0	0	1	0	0	0	15361	942	33	4	1680	4	STAG2	23	123195708	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	4472361	123195708	32074852	1518	172273											
ARHGAP36	158763	broad.mit.edu	37	chrX	130219647	130219647	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgataccctggagcgtctGctgaaggccctgcataaaat	11	10	1	2			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	130219647	C	C	130219647	2	2	226	1	0	0	0	0	0	0	0	1	885	1306	46	4		4	ARHGAP36	23	130219647	Silent	SNP	G	TCGA-91-6829-01A-21D-1855-08	7023939	130219647	25050913	1519	172274											
GPR112	139378	broad.mit.edu	37	chrX	135443783	135443783	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctaattgctgattcagatAtacaaagatctacctaattg	5	7	3	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135443783	T	T	135443783	1	4	226	0	1	0	0	0	0	0	0	0	6694	464	16	5		5	GPR112	23	135443783	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	5224136	135443783	19826777	1520	172275											
MCF2	4168	broad.mit.edu	37	chrX	138708751	138708751	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttcaaaaatataaaataAgtaactctaaaccaaaaaga	2	7	2	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138708751	G	G	138708751	1	3	226	0	1	0	0	0	0	0	0	0	9471	87	3	5		5	MCF2	23	138708751	Intron	SNP	A	TCGA-91-6829-01A-21D-1855-08	3264968	138708751	16561809	1521	172276											
ATP11C	286410	broad.mit.edu	37	chrX	138864953	138864953	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaaacacactcTgtaaatactcttgctttagc	3	8	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138864953	A	A	138864953	1	1	226	0	1	0	0	0	0	0	0	0	1125	1595	55	5		5	ATP11C	23	138864953	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	156202	138864953	16405607	1522	172277											
MAGEC2	51438	broad.mit.edu	37	chrX	141290686	141290686	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacgttgctggacatgacaCtgaggctttcactggccatg	12	10	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141290686	A	A	141290686	3	1	226	1	0	0	0	0	1	0	0	0	9273	565	20	3	37	3	MAGEC2	23	141290686	Missense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	2425733	141290686	13979874	1523	172278											
SLITRK2	84631	broad.mit.edu	37	chrX	144904933	144904934	+	Nonsense_Mutation	DNP	CC	AA	AA													tttggacccatcatggtgtaCcagaccaagtctcctgtgcc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	144904934	AA	AA	144904933	4	1	226	1	0	0	0	0	0	1	0	0	14857	518	18	3	992	3	SLITRK2	23	144904933	Nonsense_Mutation	DNP	CC	TCGA-91-6829-01A-21D-1855-08	3614247	144904933	10365627	1524	172279											
AFF2	2334	broad.mit.edu	37	chrX	147919203	147919203	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctggcctactcctctcacTtccatgcatactgctggaca	6	16	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147919203	A	A	147919203	2	1	226	1	0	0	0	0	0	0	0	1	357	1596	56	5		5	AFF2	23	147919203	Silent	SNP	T	TCGA-91-6829-01A-21D-1855-08	3014270	147919203	7351357	1525	172280											
HSFX2	100130086	broad.mit.edu	37	chrX	148842515	148842515	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccacaactacagtggtccCaggatctgccaagagtccag	10	13	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148842515	A	A	148842515	1	1	226	0	1	0	0	0	0	0	0	0	7468	609	21	2		2	HSFX2	23	148842515	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	923312	148842515	6428045	1526	172281											
CD99L2	83692	broad.mit.edu	37	chrX	149963906	149963906	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cttacctaaagtatttgctgGagctctggtggttactggcc	11	9	1	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149963906	C	C	149963906	3	2	226	1	0	0	0	0	1	0	0	0	3081	1174	41	4	485	4	CD99L2	23	149963906	Missense_Mutation	SNP	G	TCGA-91-6829-01A-21D-1855-08	1121391	149963906	5306654	1527	172282											
GPR50	9248	broad.mit.edu	37	chrX	150345292	150345292	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatcatctttatgttctgCgcgatggttatcaccatcgt	7	10	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150345292	A	A	150345292	4	1	226	1	0	0	0	0	0	1	0	0	6762	776	27	3	101	3	GPR50	23	150345292	Nonsense_Mutation	SNP	C	TCGA-91-6829-01A-21D-1855-08	381386	150345292	4925268	1528	172283											
GPR50	9248	broad.mit.edu	37	chrX	150349269	150349269	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atctgcctctacccaccacaAgtctgtctttagccactcca	4	17	4	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150349269	T	T	150349269	3	4	226	1	0	0	0	0	1	0	0	0	6762	72	3	5	1220	5	GPR50	23	150349269	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	3977	150349269	4921291	1529	172284											
PASD1	139135	broad.mit.edu	37	chrX	150780294	150780294	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taggggttcattatttatttTctttttttattatactttaa	4	3	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150780294	A	A	150780294	1	1	226	0	1	0	0	0	0	0	0	0	11565	1798	62	5		5	PASD1	23	150780294	Intron	SNP	T	TCGA-91-6829-01A-21D-1855-08	431025	150780294	4490266	1530	172285											
FATE1	89885	broad.mit.edu	37	chrX	150891246	150891246	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgatcgccccagcgcggCctccgtattggagccctccc	11	18	0	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150891246	T	T	150891246	1	4	226	0	1	0	0	0	0	0	0	0	5750	754	26	4		4	FATE1	23	150891246	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	110952	150891246	4379314	1531	172286											
CNGA2	1260	broad.mit.edu	37	chrX	150909242	150909242	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggggacctgatccccaaaCcttgcctttgtctgtcttct	9	13	3	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150909242	A	A	150909242	1	1	226	0	1	0	0	0	0	0	0	0	3629	522	18	3		3	CNGA2	23	150909242	Intron	SNP	C	TCGA-91-6829-01A-21D-1855-08	17996	150909242	4361318	1532	172287											
MAGEA5	4104	broad.mit.edu	37	chrX	151283559	151283559	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggactcggaggctttgcCgaagatcacaggaaagcagc	13	10	1	1			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151283559	A	A	151283559	1	1	226	0	1	0	0	0	0	0	0	0	9259	667	23	1		1	MAGEA5	23	151283559	3'UTR	SNP	C	TCGA-91-6829-01A-21D-1855-08	374317	151283559	3987001	1533	172288											
GABRA3	2556	broad.mit.edu	37	chrX	151336626	151336627	+	3'UTR	DNP	GG	TT	TT													aatcctgaaatacgcgaaggGgagccccggggtttgggtgc							TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	151336627	TT	TT	151336626	1	4	226	0	1	0	0	0	0	0	0	0	6222	1247	43	2		2	GABRA3	23	151336626	3'UTR	DNP	GG	TCGA-91-6829-01A-21D-1855-08	53067	151336626	3933934	1534	172289											
MAGEA12	4111	broad.mit.edu	37	chrX	151900674	151900674	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacttccactagagtagAggaggaggaggcagtctcct	15	8	1	3			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151900674	C	C	151900674	3	2	226	1	0	0	0	0	1	0	0	0	9254	304	11	5	821	5	MAGEA12	23	151900674	Missense_Mutation	SNP	A	TCGA-91-6829-01A-21D-1855-08	564048	151900674	3369886	1535	172290											
NSDHL	50814	broad.mit.edu	37	chrX	152018791	152018791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccctggtcttccccaccGttcctctctttccacaggcc	5	20	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152018791	T	T	152018791	1	4	226	0	1	0	0	0	0	0	0	0	10765	1160	40	3		3	NSDHL	23	152018791	Intron	SNP	G	TCGA-91-6829-01A-21D-1855-08	118117	152018791	3251769	1536	172291											
AVPR2	554	broad.mit.edu	37	chrX	153171805	153171805	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgtggtcgtctatgtgcTgtgctgggcacccttcttcc	12	11	2	0			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153171805	G	G	153171805	3	3	226	1	0	0	0	0	1	0	0	0	1238	1580	55	5	851	5	AVPR2	23	153171805	Missense_Mutation	SNP	T	TCGA-91-6829-01A-21D-1855-08	1153014	153171805	2098755	1537	172292											
AGRN	375790	broad.mit.edu	37	chr1	978964	978964	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtgcgaggccgagacCgggcgctgcgtgtgcccctc	16	16	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	978964	G	G	978964	2	3	227	1	0	0	0	0	0	0	0	1	397	639	23	4		4	AGRN	1	978964	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08		978964	248271657	1	172293											
ACTRT2	140625	broad.mit.edu	37	chr1	2938383	2938383	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtggggcacctgaaattcCaggctccctcagcagaggcc	12	14	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2938383	T	T	2938383	4	4	227	1	0	0	0	0	0	1	0	0	219	595	21	4	135	4	ACTRT2	1	2938383	Nonsense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1959419	2938383	246312238	2	172294											
CHD5	26038	broad.mit.edu	37	chr1	6169915	6169915	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactccttggacaggtgctGgtggctctcggcgaggcact	16	11	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6169915	T	T	6169915	3	4	227	1	0	0	0	0	1	0	0	0	3359	1357	47	2	362	2	CHD5	1	6169915	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	3231532	6169915	243080706	3	172295											
DNAJC11	55735	broad.mit.edu	37	chr1	6697497	6697497	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggaccaagagaggacacAtgttctcacccattctggac	9	13	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	6697497	G	G	6697497	1	3	227	0	1	0	0	0	0	0	0	0	4670	232	8	5		5	DNAJC11	1	6697497	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	527582	6697497	242553124	4	172296											
KIF1B	23095	broad.mit.edu	37	chr1	10397384	10397384	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgcccaactccctcctcTttgcattatttgaaccatct	4	15	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10397384	G	G	10397384	1	3	227	0	1	0	0	0	0	0	0	0	8354	1624	56	5		5	KIF1B	1	10397384	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	3699887	10397384	238853237	5	172297											
EXOSC10	5394	broad.mit.edu	37	chr1	11142707	11142707	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaatgaataatcactttcTtctgccacccacatttcctc	3	13	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11142707	C	C	11142707	1	2	227	0	1	0	0	0	0	0	0	0	5356	1624	56	5		5	EXOSC10	1	11142707	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	745323	11142707	238107914	6	172298											
PRAMEF11	440560	broad.mit.edu	37	chr1	12888465	12888465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagggaggcggcggaagGgccaggcctgcaccatcagc	17	12	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12888465	T	T	12888465	3	4	227	1	0	0	0	0	1	0	0	0	12528	1232	43	2	1263	2	PRAMEF11	1	12888465	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1745758	12888465	236362156	7	172299											
LOC649330	649330	broad.mit.edu	37	chr1	12907393	12907393	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatcatccagtgggtccccCtcctcagcagagtcttctgc	8	16	5	1	rs143857379	byFrequency	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12907393	A	A	12907393	3	1	227	1	0	0	0	0	1	0	0	0	8969	680	24	2	135	2	LOC649330	1	12907393	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	18928	12907393	236343228	8	172300											
CELA2B	51032	broad.mit.edu	37	chr1	15808918	15808918	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctgggtgcacttgggggTgaggttgtcagggaacagat	17	5	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15808918	A	A	15808918	1	1	227	0	1	0	0	0	0	0	0	0	3242	1711	59	5		5	CELA2B	1	15808918	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	2901525	15808918	233441703	9	172301											
DDI2	84301	broad.mit.edu	37	chr1	15953187	15953187	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctatgcggaaagacctctCacagacaaccacagatcatt	7	12	3	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15953187	T	T	15953187	2	4	227	1	0	0	0	0	0	0	0	1	4362	813	29	4		4	DDI2	1	15953187	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	144269	15953187	233297434	10	172302											
CLCNKA	1187	broad.mit.edu	37	chr1	16358738	16358738	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgtgcagagggcccagctGgtgcaggccctccaggctga	15	13	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16358738	T	T	16358738	2	4	227	1	0	0	0	0	0	0	0	1	3500	1335	47	2		2	CLCNKA	1	16358738	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	405551	16358738	232891883	11	172303											
NBPF1	55672	broad.mit.edu	37	chr1	16908279	16908279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttggcagctgtctcccCcatcctgccacagatctgat	8	15	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16908279	A	A	16908279	1	1	227	0	1	0	0	0	0	0	0	0	10286	638	22	2		2	NBPF1	1	16908279	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	549541	16908279	232342342	12	172304											
PADI4	23569	broad.mit.edu	37	chr1	17657705	17657705	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagggcagccacacacaCtctgtcctgccgtgatccac	9	17	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17657705	T	T	17657705	1	4	227	0	1	0	0	0	0	0	0	0	11474	580	20	4		4	PADI4	1	17657705	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	749426	17657705	231592916	13	172305											
CELA3B	23436	broad.mit.edu	37	chr1	22303654	22303654	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atctaccacttgctctaagtCccatgacaccctatgcctgg	6	15	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22303654	A	A	22303654	1	1	227	0	1	0	0	0	0	0	0	0	3244	870	30	3		3	CELA3B	1	22303654	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	4645949	22303654	226946967	14	172306											
CELA3B	23436	broad.mit.edu	37	chr1	22303770	22303770	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggggaagccgtggatGgagaaagaccccaaagggct	18	7	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22303770	T	T	22303770	1	4	227	0	1	0	0	0	0	0	0	0	3244	1363	47	2		2	CELA3B	1	22303770	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	116	22303770	226946851	15	172307											
KDM1A	23028	broad.mit.edu	37	chr1	23409697	23409697	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccacgactcttctttgcggGagaacatacgatccgtaact	8	12	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23409697	A	A	23409697	3	1	227	1	0	0	0	0	1	0	0	0	8192	1174	41	4	2553	4	KDM1A	1	23409697	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1105927	23409697	225840924	16	172308											
ARID1A	8289	broad.mit.edu	37	chr1	27089625	27089625	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctccagggaggatgagtcacGcctccatgggcaaccggcct	13	14	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27089625	C	C	27089625	3	2	227	1	0	0	0	0	1	0	0	0	915	1087	38	4	2611	4	ARID1A	1	27089625	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	3679928	27089625	222160996	17	172309											
SDC3	9672	broad.mit.edu	37	chr1	31351564	31351564	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtccacgggtctctcgaaGttctcactgcgccagcgctg	12	14	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31351564	C	C	31351564	3	2	227	1	0	0	0	0	1	0	0	0	14066	1020	36	4	1182	4	SDC3	1	31351564	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	4261939	31351564	217899057	18	172310											
C1orf94	84970	broad.mit.edu	37	chr1	34663081	34663081	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcagaaggtggccatgccCgttatcagcagcaggcagga	14	10	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34663081	T	T	34663081	2	4	227	1	0	0	0	0	0	0	0	1	2093	639	23	4		4	C1orf94	1	34663081	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	3311517	34663081	214587540	19	172311											
KIAA0754	643314	broad.mit.edu	37	chr1	39876924	39876924	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggatgagcgatggattatGatggaggctgagggagagtg	20	2	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39876924	T	T	39876924	3	4	227	1	0	0	0	0	1	0	0	0	8262	1290	45	3	989	3	KIAA0754	1	39876924	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	5213843	39876924	209373697	20	172312											
HPCAL4	51440	broad.mit.edu	37	chr1	40148229	40148229	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttctgcatgtcacactgCagcagcaacacaatggatgg	9	11	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40148229	T	T	40148229	2	4	227	1	0	0	0	0	0	0	0	1	7398	697	25	4		4	HPCAL4	1	40148229	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	271305	40148229	209102392	21	172313											
TIE1	7075	broad.mit.edu	37	chr1	43777704	43777705	+	Frame_Shift_Ins	INS	-	A	A													acgttaatgaacctgaggccINSaaagacaggatacagtgttc							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43777705	A	A	43777704	7	5	227	1	0	1	1	0	0	0	0	0	16016	594	21	0	1574	0	TIE1	1	43777704	Frame_Shift_Ins	INS	-	TCGA-91-6831-01A-11D-1855-08	3629475	43777704	205472917	22	172314											
RNF220	55182	broad.mit.edu	37	chr1	45091964	45091964	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacatgtcttttttcttctTccagtccctcctgttgtctg	5	14	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45091964	A	A	45091964	1	1	227	0	1	0	0	0	0	0	0	0	13594	1798	62	5		5	RNF220	1	45091964	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1314260	45091964	204158657	23	172315											
GPBP1L1	60313	broad.mit.edu	37	chr1	46120260	46120260	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttccaccttgtcttctttCttttcttccctaatctccat	1	14	5	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46120260	A	A	46120260	3	1	227	1	0	0	0	0	1	0	0	0	6661	912	32	3	1024	3	GPBP1L1	1	46120260	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1028296	46120260	203130361	24	172316											
ORC1L	4998	broad.mit.edu	37	chr1	52861686	52861686	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acataaccctttagccccagTattgcccacggtgatccatt	6	14	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52861686	C	C	52861686	1	2	227	0	1	0	0	0	0	0	0	0	11355	1653	57	5		5	ORC1L	1	52861686	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	6741426	52861686	196388935	25	172317											
ZCCHC11	23318	broad.mit.edu	37	chr1	52991905	52991905	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttcttcacaaataacattCttctttggttcatgattttc	3	9	5	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52991905	T	T	52991905	2	4	227	1	0	0	0	0	0	0	0	1	17706	912	32	4		4	ZCCHC11	1	52991905	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	130219	52991905	196258716	26	172318											
DOCK7	85440	broad.mit.edu	37	chr1	63098998	63098998	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaataaagaagaaaggaagaTaggaagtgggcaaacagaaa	12	2	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63098998	C	C	63098998	1	2	227	0	1	0	0	0	0	0	0	0	4732	1421	49	5		5	DOCK7	1	63098998	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	10107093	63098998	186151623	27	172319											
C1orf141	400757	broad.mit.edu	37	chr1	67592863	67592863	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaacctttgttcttctggCcaagattatctctgcttgct	6	11	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67592863	A	A	67592863	3	1	227	1	0	0	0	0	1	0	0	0	2021	739	26	3	1165	3	C1orf141	1	67592863	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	4493865	67592863	181657758	28	172320											
C1orf173	127254	broad.mit.edu	37	chr1	75038834	75038834	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctatggggtctgacccccCttcacccagccttctgaccc	7	19	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75038834	A	A	75038834	3	1	227	1	0	0	0	0	1	0	0	0	2034	681	24	2	2036	2	C1orf173	1	75038834	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	7445971	75038834	174211787	29	172321											
PIGK	10026	broad.mit.edu	37	chr1	77661195	77661195	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaatggcacacagttttaCggaaattcaagaataaggcc	8	7	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77661195	A	A	77661195	1	1	227	0	1	0	0	0	0	0	0	0	11985	551	19	3		3	PIGK	1	77661195	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2622361	77661195	171589426	30	172322											
AK5	26289	broad.mit.edu	37	chr1	77759535	77759535	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccggctccctccaatccAtcaattctccatagaaagtg	6	14	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77759535	G	G	77759535	3	3	227	1	0	0	0	0	1	0	0	0	443	217	8	5	315	5	AK5	1	77759535	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	98340	77759535	171491086	31	172323											
LPHN2	23266	broad.mit.edu	37	chr1	82408796	82408796	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cctggactccctatcgtaccGatactttaatagaatatgct	6	11	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82408796	A	A	82408796	3	1	227	1	0	0	0	0	1	0	0	0	9003	1058	37	4	555	4	LPHN2	1	82408796	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	4649261	82408796	166841825	32	172324											
LPHN2	23266	broad.mit.edu	37	chr1	82437665	82437665	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagtgctattcaaacaaGgataatttgttttattgttt	7	4	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82437665	T	T	82437665	1	4	227	0	1	0	0	0	0	0	0	0	9003	1015	35	2		2	LPHN2	1	82437665	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	28869	82437665	166812956	33	172325											
SYDE2	84144	broad.mit.edu	37	chr1	85634849	85634849	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cattgcatctaatacagcctCataaagctgctttgttatca	5	10	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85634849	G	G	85634849	3	3	227	1	0	0	0	0	1	0	0	0	15555	835	29	4	865	4	SYDE2	1	85634849	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3197184	85634849	163615772	34	172326											
SYDE2	84144	broad.mit.edu	37	chr1	85647781	85647781	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaccatagtaagataatacCtgacagcctctcttttcaat	5	10	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85647781	G	G	85647781	3	3	227	1	0	0	0	0	1	0	0	0	15555	695	24	4	1060	4	SYDE2	1	85647781	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	12932	85647781	163602840	35	172327											
GBP3	2635	broad.mit.edu	37	chr1	89480279	89480279	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttcccatgctattgtacaCgagagtgctgctcaggagga	13	9	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89480279	T	T	89480279	3	4	227	1	0	0	0	0	1	0	0	0	6337	536	19	4	1440	4	GBP3	1	89480279	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3832498	89480279	159770342	36	172328											
LRRC8D	55144	broad.mit.edu	37	chr1	90400997	90400997	+	Silent	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	cagaactgcatcacctcactCccagagaaagttggtcagct	8	13	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90400997	G	G	90400997	2	3	227	1	0	0	0	0	0	0	0	1	9111	842	30	4		4	LRRC8D	1	90400997	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	920718	90400997	158849624	37	172329											
COL11A1	1301	broad.mit.edu	37	chr1	103348929	103348929	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	catcattgttgaatgcattaGatgtcaaattttgttagaaa	7	4	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103348929	T	T	103348929	1	4	227	0	1	0	0	0	0	0	0	0	3699	957	33	3		3	COL11A1	1	103348929	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	12947932	103348929	145901692	38	172330											
AMPD1	270	broad.mit.edu	37	chr1	115226990	115226990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcttcaactgtaacctgcCaaaaaaaaaaaagtcagcat	4	9	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115226990	A	A	115226990	1	1	227	0	1	0	0	0	0	0	0	0	585	609	21	2		2	AMPD1	1	115226990	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	11878061	115226990	134023631	39	172331											
NBPF10	100132406	broad.mit.edu	37	chr1	145290406	145290406	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agcatgctttgagtataaatTaagtttacctctttttgcac	6	7	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145290406	A	A	145290406	1	1	227	0	1	0	0	0	0	0	0	0	10287	1769	61	5		5	NBPF10	1	145290406	5'Flank	SNP	T	TCGA-91-6831-01A-11D-1855-08	30063416	145290406	103960215	40	172332											
NBPF10	100132406	broad.mit.edu	37	chr1	145304128	145304128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatccagcttagacacagGgtgcggtagctgtcatgttt	11	8	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145304128	T	T	145304128	1	4	227	0	1	0	0	0	0	0	0	0	10287	1247	43	2		2	NBPF10	1	145304128	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	13722	145304128	103946493	41	172333											
NBPF10	100132406	broad.mit.edu	37	chr1	145563121	145563121	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcagctgaggtagccctGgggagcactggggaaagttt	17	7	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145563121	T	T	145563121	1	4	227	0	1	0	0	0	0	0	0	0	10287	1363	47	2		2	NBPF10	1	145563121	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	258993	145563121	103687500	42	172334											
LELP1	149018	broad.mit.edu	37	chr1	153177438	153177438	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcctaaatgcccttcatcCtgcccacatgcttgcccacc	4	20	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153177438	G	G	153177438	2	3	227	1	0	0	0	0	0	0	0	1	8790	668	24	4		4	LELP1	1	153177438	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	7614317	153177438	96073183	43	172335											
NPR1	4881	broad.mit.edu	37	chr1	153660055	153660055	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccacacccttgtttcccccTcaccccttagctttgggctc	6	19	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153660055	A	A	153660055	1	1	227	0	1	0	0	0	0	0	0	0	10689	1566	54	5		5	NPR1	1	153660055	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	482617	153660055	95590566	44	172336											
SEMA4A	64218	broad.mit.edu	37	chr1	156126240	156126240	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttagcttcttccaccagAagggcctccaggattttgac	8	13	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	156126240	G	G	156126240	3	3	227	1	0	0	0	0	1	0	0	0	14144	247	9	5	181	5	SEMA4A	1	156126240	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	2466185	156126240	93124381	45	172337											
CCT3	7203	broad.mit.edu	37	chr1	156307972	156307972	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcactggacgatggcccaTcatggcgacgcgatgcagag	15	11	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156307972	C	C	156307972	3	2	227	1	0	0	0	0	1	0	0	0	2984	1435	50	5	1689	5	CCT3	1	156307972	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	181732	156307972	92942649	46	172338											
KIRREL	55243	broad.mit.edu	37	chr1	158063633	158063633	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagatctctaataaccgcGgtcattctctccttcctcag	5	16	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158063633	T	T	158063633	1	4	227	0	1	0	0	0	0	0	0	0	8395	1131	39	1		1	KIRREL	1	158063633	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1755661	158063633	91186988	47	172339											
OR10K1	391109	broad.mit.edu	37	chr1	158436195	158436195	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcatacaccatccttAccccattgttcaatccaatg	4	14	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158436195	T	T	158436195	3	4	227	1	0	0	0	0	1	0	0	0	11007	391	14	5	846	5	OR10K1	1	158436195	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	372562	158436195	90814426	48	172340											
OR6N2	81442	broad.mit.edu	37	chr1	158746817	158746817	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgataagaattatgaaagcAttaatggcaaagtccaccag	9	6	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158746817	T	T	158746817	3	4	227	1	0	0	0	0	1	0	0	0	11301	214	8	5	347	5	OR6N2	1	158746817	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	310622	158746817	90503804	49	172341											
CADM3	57863	broad.mit.edu	37	chr1	159163593	159163593	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaggcccacatgatatctGtatgttaggtttactctgtg	10	7	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159163593	T	T	159163593	1	4	227	0	1	0	0	0	0	0	0	0	2594	1392	48	3		3	CADM3	1	159163593	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	416776	159163593	90087028	50	172342											
ATP1A2	477	broad.mit.edu	37	chr1	160093794	160093794	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggctgcttctcctactaccAggaggccaagagctccaaga	10	13	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160093794	T	T	160093794	3	4	227	1	0	0	0	0	1	0	0	0	1133	188	7	5	461	5	ATP1A2	1	160093794	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	930201	160093794	89156827	51	172343											
ATP1A2	477	broad.mit.edu	37	chr1	160099287	160099287	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactagcaggagtgggggtGtctgagggtcatgttccctc	15	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160099287	T	T	160099287	1	4	227	0	1	0	0	0	0	0	0	0	1133	1392	48	3		3	ATP1A2	1	160099287	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	5493	160099287	89151334	52	172344											
MAEL	84944	broad.mit.edu	37	chr1	166959003	166959003	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagaaaaggagaaataCgcagaaatggctcgagaatg	14	4	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166959003	A	A	166959003	4	1	227	1	0	0	0	0	0	1	0	0	9242	547	19	3	168	3	MAEL	1	166959003	Nonsense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	6859716	166959003	82291618	53	172345											
TNFSF4	7292	broad.mit.edu	37	chr1	173176418	173176418	+	Translation_Start_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaaagacaaaacaaagcCtatcaatcagaaaataggca	7	7	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173176418	A	A	173176418	1	1	227	1	0	0	0	0	0	0	0	0	16433	696	24	2		2	TNFSF4	1	173176418	Translation_Start_Site	SNP	C	TCGA-91-6831-01A-11D-1855-08	6217415	173176418	76074203	54	172346											
KIAA1614	57710	broad.mit.edu	37	chr1	180907659	180907659	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gacctgtgggatgagccggtCtgactcaggtgggatgctgt	17	8	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180907659	G	G	180907659	1	3	227	0	1	0	0	0	0	0	0	0	8318	928	32	4		4	KIAA1614	1	180907659	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	7731241	180907659	68342962	55	172347											
CACNA1E	777	broad.mit.edu	37	chr1	181705475	181705475	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gagatcagagaggatgaggaGgaggtggagaagaagaagca	19	2	1	6			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	181705475	C	C	181705475	3	2	227	1	0	0	0	0	1	0	0	0	2568	991	35	4	3413	4	CACNA1E	1	181705475	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	797816	181705475	67545146	56	172348											
FAM129A	116496	broad.mit.edu	37	chr1	184767196	184767196	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagtgtccctgcagcacCaggtaacctttcttaccttt	8	12	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	184767196	A	A	184767196	1	1	227	0	1	0	0	0	0	0	0	0	5482	609	21	2		2	FAM129A	1	184767196	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	3061721	184767196	64483425	57	172349											
HMCN1	83872	broad.mit.edu	37	chr1	186023004	186023004	+	Frame_Shift_Del	DEL	G	-	-													ggcgagttagaattttatctGggggcaggcaattacaaatt							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	186023004	-	-	186023004	7	5	227	1	0	1	0	1	0	0	0	0	7287	1348	47	0	6922	0	HMCN1	1	186023004	Frame_Shift_Del	DEL	G	TCGA-91-6831-01A-11D-1855-08	1255808	186023004	63227617	58	172350											
TPR	7175	broad.mit.edu	37	chr1	186315293	186315293	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccatgctctctatggctcTtcttttatcatcctgaagtt	5	11	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	186315293	C	C	186315293	3	2	227	1	0	0	0	0	1	0	0	0	16540	1617	56	5	4137	5	TPR	1	186315293	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	292289	186315293	62935328	59	172351											
PTPRC	5788	broad.mit.edu	37	chr1	198703373	198703373	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcacaaggtaatttctttGataatccaatattctttttg	5	7	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	198703373	C	C	198703373	1	2	227	0	1	0	0	0	0	0	0	0	12905	1305	45	4		4	PTPRC	1	198703373	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	12388080	198703373	50547248	60	172352											
PKP1	5317	broad.mit.edu	37	chr1	201294883	201294883	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacttctcacctgcccagtGcctcacccaaggccgcagaa	8	18	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201294883	A	A	201294883	3	1	227	1	0	0	0	0	1	0	0	0	12079	1333	46	4	2136	4	PKP1	1	201294883	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2591510	201294883	47955738	61	172353											
PLEKHA6	22874	broad.mit.edu	37	chr1	204197888	204197888	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagtgtcttgatcctctcCaccttcttctgcttctcctt	5	14	5	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204197888	T	T	204197888	2	4	227	1	0	0	0	0	0	0	0	1	12155	581	21	4		4	PLEKHA6	1	204197888	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	2903005	204197888	45052733	62	172354											
NFASC	23114	broad.mit.edu	37	chr1	204943311	204943311	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgggaatttcagatgtGccgcctcggatgctgtcgcc	12	12	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204943311	T	T	204943311	2	4	227	1	0	0	0	0	0	0	0	1	10454	1306	46	3		3	NFASC	1	204943311	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	745423	204943311	44307310	63	172355											
LEMD1	93273	broad.mit.edu	37	chr1	205389623	205389623	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatccaagcttctcaagttgGttctgcaatttacagtcact	6	10	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205389623	A	A	205389623	2	1	227	1	0	0	0	0	0	0	0	1	8791	1252	44	4		4	LEMD1	1	205389623	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	446312	205389623	43860998	64	172356											
C1orf116	79098	broad.mit.edu	37	chr1	207195331	207195331	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacagtcccagcttcttcAgggcctcccttctgtgttca	7	15	5	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	207195331	G	G	207195331	3	3	227	1	0	0	0	0	1	0	0	0	2009	188	7	5	31	5	C1orf116	1	207195331	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	1805708	207195331	42055290	65	172357											
ESRRG	2104	broad.mit.edu	37	chr1	216741310	216741310	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcgtgttctgggaagccaGacacatctgctgtacttaca	9	10	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216741310	T	T	216741310	1	4	227	0	1	0	0	0	0	0	0	0	5304	957	33	3		3	ESRRG	1	216741310	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	9545979	216741310	32509311	66	172358											
CAPN2	824	broad.mit.edu	37	chr1	223959907	223959907	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atttaagcagctggatcccgAgaatactggaacaatagagc	10	8	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	223959907	G	G	223959907	3	3	227	1	0	0	0	0	1	0	0	0	2653	304	11	5	2130	5	CAPN2	1	223959907	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	7218597	223959907	25290714	67	172359											
ZNF678	339500	broad.mit.edu	37	chr1	227842427	227842427	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaatgtgacgaatgtgGcaaagtttttaattggtggt	11	4	0	1	rs145397350		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	227842427	T	T	227842427	3	4	227	1	0	0	0	0	1	0	0	0	18212	1203	42	3	655	3	ZNF678	1	227842427	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	3882520	227842427	21408194	68	172360											
OBSCN	84033	broad.mit.edu	37	chr1	228504513	228504513	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggtgcccgtgggagaGgcgtcctggtacatcaatgg	18	9	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228504513	T	T	228504513	3	4	227	1	0	0	0	0	1	0	0	0	10907	991	35	2	13587	2	OBSCN	1	228504513	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	662086	228504513	20746108	69	172361											
URB2	9816	broad.mit.edu	37	chr1	229783177	229783177	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcacagacatttctacctcAgtcactcagagctgcagtgt	8	12	4	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	229783177	T	T	229783177	1	4	227	0	1	0	0	0	0	0	0	0	17151	203	7	5		5	URB2	1	229783177	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	1278664	229783177	19467444	70	172362											
ACTN2	88	broad.mit.edu	37	chr1	236925911	236925911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgcactctacggggagagcGatctgtgatgctgagcttct	13	11	3	3	rs142646143		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236925911	T	T	236925911	3	4	227	1	0	0	0	0	1	0	0	0	205	1058	37	3	2759	3	ACTN2	1	236925911	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	7142734	236925911	12324710	71	172363											
WDR64	128025	broad.mit.edu	37	chr1	241946635	241946635	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aattattcaagtaatctatgTagaagaaaaacaagtggtac	7	4	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	241946635	A	A	241946635	3	1	227	1	0	0	0	0	1	0	0	0	17442	1638	57	5	2713	5	WDR64	1	241946635	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	5020724	241946635	7303986	72	172364											
TRIM58	25893	broad.mit.edu	37	chr1	248039170	248039170	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctaccagtcctttctttcCtttcacctggtccaccacat	3	16	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248039170	A	A	248039170	1	1	227	0	1	0	0	0	0	0	0	0	16656	696	24	2		2	TRIM58	1	248039170	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	6092535	248039170	1211451	73	172365											
OR2L13	284521	broad.mit.edu	37	chr1	248247427	248247427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctcagggtagcaacagcCtgcaggagcccgtcagctgc	13	13	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248247427	A	A	248247427	1	1	227	0	1	0	0	0	0	0	0	0	11100	696	24	2		2	OR2L13	1	248247427	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	208257	248247427	1003194	74	172366											
OR2G6	391211	broad.mit.edu	37	chr1	248685829	248685829	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attatctacactctgagaaaCaaagatgtgaaaggggcctt	9	7	2	3	rs139958354	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	248685829	A	A	248685829	3	1	227	1	0	0	0	0	1	0	0	0	11094	477	17	3	884	3	OR2G6	1	248685829	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	438402	248685829	564792	75	172367											
PXDN	7837	broad.mit.edu	37	chr2	1643180	1643180	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaggcattgaactgccCcctggtcctacagtctaaaa	9	11	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1643180	T	T	1643180	3	4	227	1	0	0	0	0	1	0	0	0	12955	623	22	4	488	4	PXDN	2	1643180	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08		1643180	241556193	76	172368											
MYT1L	23040	broad.mit.edu	37	chr2	1915812	1915812	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcggtgggagttcctgttGctgttgacatgcccgcgccc	13	13	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1915812	A	A	1915812	2	1	227	1	0	0	0	0	0	0	0	1	10201	1310	46	4		4	MYT1L	2	1915812	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	272632	1915812	241283561	77	172369											
RPS7	6201	broad.mit.edu	37	chr2	3624026	3624026	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctctaatttgaccacaaCgtttactttctgaagcagtt	5	10	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3624026	T	T	3624026	1	4	227	0	1	0	0	0	0	0	0	0	13771	551	19	4		4	RPS7	2	3624026	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	1708214	3624026	239575347	78	172370											
KIDINS220	57498	broad.mit.edu	37	chr2	8873800	8873800	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggctttctgcgtttctcAtttctagtaccttaacagaa	7	10	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8873800	G	G	8873800	3	3	227	1	0	0	0	0	1	0	0	0	8341	217	8	5	1496	5	KIDINS220	2	8873800	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	5249774	8873800	234325573	79	172371											
ODC1	4953	broad.mit.edu	37	chr2	10583844	10583844	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcacctgacaccaacaacatCgatatttagctctttcgccc	4	15	2	1	rs116522452	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10583844	T	T	10583844	3	4	227	1	0	0	0	0	1	0	0	0	10920	884	31	4	845	4	ODC1	2	10583844	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1710044	10583844	232615529	80	172372											
ROCK2	9475	broad.mit.edu	37	chr2	11332366	11332366	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggagatgatcgggcaaaAgggtctggagctgggggctt	18	6	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	11332366	G	G	11332366	2	3	227	1	0	0	0	0	0	0	0	1	13629	59	3	5		5	ROCK2	2	11332366	Silent	SNP	A	TCGA-91-6831-01A-11D-1855-08	748522	11332366	231867007	81	172373											
NBAS	51594	broad.mit.edu	37	chr2	15696984	15696984	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagccaaatataaatcagcTgttaagaatcattttcaaat	4	6	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15696984	A	A	15696984	1	1	227	0	1	0	0	0	0	0	0	0	10280	1595	55	5		5	NBAS	2	15696984	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	4364618	15696984	227502389	82	172374											
NBAS	51594	broad.mit.edu	37	chr2	15701345	15701345	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tccggtggccactcggtgttGaccaacaagtcatagagaat	11	10	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	15701345	C	C	15701345	2	2	227	1	0	0	0	0	0	0	0	1	10280	1277	45	4		4	NBAS	2	15701345	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	4361	15701345	227498028	83	172375											
RAD51AP2	729475	broad.mit.edu	37	chr2	17698928	17698928	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cacttattgtgccgctatctCtaaaatagctaggtttggca	8	9	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	17698928	G	G	17698928	3	3	227	1	0	0	0	0	1	0	0	0	13095	913	32	4	2736	4	RAD51AP2	2	17698928	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1997583	17698928	225500445	84	172376											
NT5C1B	93034	broad.mit.edu	37	chr2	18768216	18768216	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcccctcacccaggttGtctgtggttcccctccagaa	7	16	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18768216	T	T	18768216	1	4	227	0	1	0	0	0	0	0	0	0	10781	1392	48	3		3	NT5C1B	2	18768216	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1069288	18768216	224431157	85	172377											
OSR1	130497	broad.mit.edu	37	chr2	19553013	19553013	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	taagtaggttgtaggacttgGtgaagtggcggccacagaac	15	6	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19553013	C	C	19553013	3	2	227	1	0	0	0	0	1	0	0	0	11387	1261	44	4	254	4	OSR1	2	19553013	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	784797	19553013	223646360	86	172378											
ASXL2	55252	broad.mit.edu	37	chr2	25966399	25966399	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcttaaagtgggtccaTtcatgtttaaagaagttcct	9	6	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25966399	C	C	25966399	3	2	227	1	0	0	0	0	1	0	0	0	1071	1493	52	5	1504	5	ASXL2	2	25966399	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	6413386	25966399	217232974	87	172379											
ALK	238	broad.mit.edu	37	chr2	29551313	29551313	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattccaacaagtgaaggaGctctgcagggccatcttgga	11	11	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29551313	A	A	29551313	2	1	227	1	0	0	0	0	0	0	0	1	525	962	34	4		4	ALK	2	29551313	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	3584914	29551313	213648060	88	172380											
CRIM1	51232	broad.mit.edu	37	chr2	36775852	36775852	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaacagtgtgaagaaaggCaactaggatgaggtttcaaa	11	6	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36775852	A	A	36775852	1	1	227	0	1	0	0	0	0	0	0	0	3905	725	25	3		3	CRIM1	2	36775852	3'UTR	SNP	C	TCGA-91-6831-01A-11D-1855-08	7224539	36775852	206423521	89	172381											
FSHR	2492	broad.mit.edu	37	chr2	49210068	49210068	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaatgactggtccagaGgctccgtggaaaacatcatt	10	10	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49210068	T	T	49210068	2	4	227	1	0	0	0	0	0	0	0	1	6133	987	35	2		2	FSHR	2	49210068	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	12434216	49210068	193989305	90	172382											
FSHR	2492	broad.mit.edu	37	chr2	49216143	49216143	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cactttcaaagctcagccccAcgaaagaatttctttcaatt	4	12	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	49216143	G	G	49216143	3	3	227	1	0	0	0	0	1	0	0	0	6133	159	6	5	1610	5	FSHR	2	49216143	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	6075	49216143	193983230	91	172383											
NRXN1	9378	broad.mit.edu	37	chr2	50733626	50733626	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagacaatgggacagaggTgtttacctgtcatggcctgt	12	7	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50733626	A	A	50733626	1	1	227	0	1	0	0	0	0	0	0	0	10760	1711	59	5		5	NRXN1	2	50733626	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1517483	50733626	192465747	92	172384											
C2orf86	51057	broad.mit.edu	37	chr2	63664755	63664755	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tagatttttccactgatatgTtacaaaaagctattttcaaa	4	6	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63664755	A	A	63664755	1	1	227	0	1	0	0	0	0	0	0	0	2223	1740	60	5		5	C2orf86	2	63664755	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	12931129	63664755	179534618	93	172385											
APLF	200558	broad.mit.edu	37	chr2	68804987	68804987	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagataatgataatgttGggcaacccaatgagtatgac	10	5	0	5			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68804987	T	T	68804987	3	4	227	1	0	0	0	0	1	0	0	0	778	1348	47	2	1407	2	APLF	2	68804987	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	5140232	68804987	174394386	94	172386											
ZNF638	27332	broad.mit.edu	37	chr2	71631177	71631177	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttactaagtttttaaatcaGatttgttacagtctgttatg	6	5	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71631177	C	C	71631177	1	2	227	0	1	0	0	0	0	0	0	0	18182	957	33	4		4	ZNF638	2	71631177	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2826190	71631177	171568196	95	172387											
EXOC6B	23233	broad.mit.edu	37	chr2	72562101	72562101	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaagtcgatgaaggccaacTgcagcgtgtcctcctggaac	11	12	1	1	rs111624023		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72562101	A	A	72562101	3	1	227	1	0	0	0	0	1	0	0	0	5351	1580	55	5	276	5	EXOC6B	2	72562101	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	930924	72562101	170637272	96	172388											
ALMS1	7840	broad.mit.edu	37	chr2	73677420	73677420	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	accaacaggtcttgccagatAatcatccaactgaagaggct	8	11	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73677420	T	T	73677420	3	4	227	1	0	0	0	0	1	0	0	0	535	362	13	5	3793	5	ALMS1	2	73677420	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	1115319	73677420	169521953	97	172389											
TEKT4	150483	broad.mit.edu	37	chr2	95539718	95539718	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	accccgccccagactgaaccGggagcacaaggagacctgcg	12	16	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	95539718	C	C	95539718	3	2	227	1	0	0	0	0	1	0	0	0	15877	1116	39	4	588	4	TEKT4	2	95539718	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	21862298	95539718	147659655	98	172390											
IL1R2	7850	broad.mit.edu	37	chr2	102626011	102626011	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccaaagcctgaccatgggctCtctgtccttcaggggctgcc	11	15	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102626011	A	A	102626011	1	1	227	0	1	0	0	0	0	0	0	0	7729	928	32	3		3	IL1R2	2	102626011	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	7086293	102626011	140573362	99	172391											
ST6GAL2	84620	broad.mit.edu	37	chr2	107446536	107446536	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acctaccaatgaaaccagaaGatggtgggtttggttgaatc	11	7	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	107446536	C	C	107446536	3	2	227	1	0	0	0	0	1	0	0	0	15340	942	33	4	380	4	ST6GAL2	2	107446536	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	4820525	107446536	135752837	100	172392											
LIMS1	3987	broad.mit.edu	37	chr2	109276117	109276117	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgcaagggcggctttgCgcccgctgagaagatcgtga	16	11	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109276117	T	T	109276117	3	4	227	1	0	0	0	0	1	0	0	0	8875	768	27	4	55	4	LIMS1	2	109276117	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1829581	109276117	133923256	101	172393											
SEPT10	151011	broad.mit.edu	37	chr2	110332300	110332300	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcagttcttcttggagaTaggcctcaaactgagcatct	8	10	6	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	110332300	C	C	110332300	3	2	227	1	0	0	0	0	1	0	0	0	14173	1406	49	5	934	5	SEPT10	2	110332300	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	1056183	110332300	132867073	102	172394											
NPHP1	4867	broad.mit.edu	37	chr2	110901067	110901067	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaaaagcagagatggtctCcaagtgctgaatgatcccaa	10	10	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110901067	T	T	110901067	1	4	227	0	1	0	0	0	0	0	0	0	10674	870	30	4		4	NPHP1	2	110901067	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	568767	110901067	132298306	103	172395											
MERTK	10461	broad.mit.edu	37	chr2	112767591	112767591	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aattttacccttcatgaaatAcggggacctgcatacttact	6	10	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112767591	G	G	112767591	3	3	227	1	0	0	0	0	1	0	0	0	9572	391	14	5	2085	5	MERTK	2	112767591	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	1866524	112767591	130431782	104	172396											
SLC20A1	6574	broad.mit.edu	37	chr2	113420521	113420521	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcgtaacatttttatggcCtggtttgtcacagtccccat	7	10	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113420521	T	T	113420521	2	4	227	1	0	0	0	0	0	0	0	1	14551	668	24	4		4	SLC20A1	2	113420521	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	652930	113420521	129778852	105	172397											
ERCC3	2071	broad.mit.edu	37	chr2	128044238	128044238	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacaactggaaattggtttGtctgttcagcaagtggacag	11	6	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128044238	A	A	128044238	1	1	227	0	1	0	0	0	0	0	0	0	5256	1392	48	4		4	ERCC3	2	128044238	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	14623717	128044238	115155135	106	172398											
IMP4	92856	broad.mit.edu	37	chr2	131102212	131102212	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctctgcagaaaaccgcctGattcccactgagttacgccg	8	16	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131102212	T	T	131102212	2	4	227	1	0	0	0	0	0	0	0	1	7790	1277	45	3		3	IMP4	2	131102212	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	3057974	131102212	112097161	107	172399											
PLEKHB2	55041	broad.mit.edu	37	chr2	131951800	131951800	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggtggcagaaacaggaCatggcaaccagaacagcttc	12	10	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131951800	A	A	131951800	1	1	227	0	1	0	0	0	0	0	0	0	12160	493	17	3		3	PLEKHB2	2	131951800	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	849588	131951800	111247573	108	172400											
NCKAP5	344148	broad.mit.edu	37	chr2	133542094	133542094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgaggattttgtgtcaCtgtcctggagctgaaagatt	12	7	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133542094	A	A	133542094	3	1	227	1	0	0	0	0	1	0	0	0	10318	565	20	3	3467	3	NCKAP5	2	133542094	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1590294	133542094	109657279	109	172401											
MGAT5	4249	broad.mit.edu	37	chr2	135027974	135027974	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagatctgaagaaaacccttGctgtgttattagataacatt	7	7	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	135027974	C	C	135027974	3	2	227	1	0	0	0	0	1	0	0	0	9641	1319	46	4	265	4	MGAT5	2	135027974	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1485880	135027974	108171399	110	172402											
RAB3GAP1	22930	broad.mit.edu	37	chr2	135907882	135907882	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctttattctatttttatGgtacttctttttctaaaaag	4	5	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	135907882	T	T	135907882	1	4	227	0	1	0	0	0	0	0	0	0	13043	1363	47	2		2	RAB3GAP1	2	135907882	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	879908	135907882	107291491	111	172403											
ZRANB3	84083	broad.mit.edu	37	chr2	135988167	135988167	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagagactacattgccagcCctctacaggaaaggctgggg	13	11	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135988167	G	G	135988167	3	3	227	1	0	0	0	0	1	0	0	0	18353	623	22	4	1405	4	ZRANB3	2	135988167	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	80285	135988167	107211206	112	172404											
LCT	3938	broad.mit.edu	37	chr2	136564899	136564899	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaccgtgtagccatttagCcactcaaagttgtccatcag	8	11	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136564899	A	A	136564899	3	1	227	1	0	0	0	0	1	0	0	0	8765	740	26	3	1847	3	LCT	2	136564899	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	576732	136564899	106634474	113	172405											
GTDC1	79712	broad.mit.edu	37	chr2	144764708	144764708	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagaatatattttcttttacCagttctacaactcttactaa	2	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144764708	G	G	144764708	1	3	227	0	1	0	0	0	0	0	0	0	6916	609	21	4		4	GTDC1	2	144764708	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	8199809	144764708	98434665	114	172406											
TNFAIP6	7130	broad.mit.edu	37	chr2	152230150	152230150	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatgatttgtttctttacaGtgtccctgaaagtaaaggga	9	6	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152230150	C	C	152230150	1	2	227	0	1	0	0	0	0	0	0	0	16398	1044	36	4		4	TNFAIP6	2	152230150	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	7465442	152230150	90969223	115	172407											
NEB	4703	broad.mit.edu	37	chr2	152521927	152521927	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaacttcagcttctcggGgtgctggcgatacttcttct	11	10	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152521927	T	T	152521927	3	4	227	1	0	0	0	0	1	0	0	0	10397	1232	43	2	21092	2	NEB	2	152521927	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	291777	152521927	90677446	116	172408											
IFIH1	64135	broad.mit.edu	37	chr2	163150261	163150261	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacctctacagcacacaGtacatacagttcaattcaag	5	13	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163150261	T	T	163150261	1	4	227	0	1	0	0	0	0	0	0	0	7590	1044	36	3		3	IFIH1	2	163150261	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	10628334	163150261	80049112	117	172409											
KCNH7	90134	broad.mit.edu	37	chr2	163302909	163302909	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aacttgttgatgcgtggtgtCtgcagtttgtattcaggtag	13	5	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163302909	T	T	163302909	2	4	227	1	0	0	0	0	0	0	0	1	8107	912	32	4		4	KCNH7	2	163302909	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	152648	163302909	79896464	118	172410											
SCN7A	6332	broad.mit.edu	37	chr2	167319150	167319150	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagagaactcacgcttccaCagggagagtaatgtctgctc	10	10	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167319150	A	A	167319150	1	1	227	0	1	0	0	0	0	0	0	0	14036	493	17	3		3	SCN7A	2	167319150	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	4016241	167319150	75880223	119	172411											
LRP2	4036	broad.mit.edu	37	chr2	170053360	170053360	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtatttgaagcagttGgaagagactgaagttgtcta	13	4	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	170053360	A	A	170053360	1	1	227	0	1	0	0	0	0	0	0	0	9043	1363	47	4		4	LRP2	2	170053360	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2734210	170053360	73146013	120	172412											
TTN	7273	broad.mit.edu	37	chr2	179443697	179443697	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acgtcacccacttgttgttcAcagaatccctcttctctagg	6	14	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179443697	T	T	179443697	3	4	227	1	0	0	0	0	1	0	0	0	16861	159	6	5	40091	5	TTN	2	179443697	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	9390337	179443697	63755676	121	172413											
TTN	7273	broad.mit.edu	37	chr2	179568920	179568920	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggtcttcatatttgcaGgtgtactgaccctggtcttc	9	10	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179568920	T	T	179568920	2	4	227	1	0	0	0	0	0	0	0	1	16861	987	35	2		2	TTN	2	179568920	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	125223	179568920	63630453	122	172414											
TTN	7273	broad.mit.edu	37	chr2	179593685	179593686	+	Missense_Mutation	DNP	CC	AA	AA													ttggcttgacaggtatatctCccactgtgtccattatccac							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	179593686	AA	AA	179593685	3	1	227	1	0	0	0	0	1	0	0	0	16861	842	30	3	85641	3	TTN	2	179593685	Missense_Mutation	DNP	CC	TCGA-91-6831-01A-11D-1855-08	24765	179593685	63605688	123	172415											
TTN	7273	broad.mit.edu	37	chr2	179603970	179603970	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcttcggtatttactttgtCgatgactagcgtatatgtat	9	6	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179603970	G	G	179603970	3	3	227	1	0	0	0	0	1	0	0	0	16861	884	31	4	90799	4	TTN	2	179603970	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	10285	179603970	63595403	124	172416											
PPP1R1C	151242	broad.mit.edu	37	chr2	182850701	182850701	+	5'UTR	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcggcatcttcacttgctcGatctggaattacagctattt	7	11	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182850701	T	T	182850701	1	4	227	0	1	0	0	0	0	0	0	0	12470	1073	37	3		3	PPP1R1C	2	182850701	5'UTR	SNP	G	TCGA-91-6831-01A-11D-1855-08	3246731	182850701	60348672	125	172417											
GULP1	51454	broad.mit.edu	37	chr2	189448947	189448947	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatatttagcattacaatGtgtctatatgaaatattacc	5	5	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	189448947	A	A	189448947	1	1	227	0	1	0	0	0	0	0	0	0	6966	1392	48	4		4	GULP1	2	189448947	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	6598246	189448947	53750426	126	172418											
DNAH7	56171	broad.mit.edu	37	chr2	196689130	196689130	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttagtagaagaggttccAaaataggatctagttcttcg	10	5	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	196689130	G	G	196689130	3	3	227	1	0	0	0	0	1	0	0	0	4646	131	5	5	3002	5	DNAH7	2	196689130	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	7240183	196689130	46510243	127	172419											
TRAK2	66008	broad.mit.edu	37	chr2	202260067	202260067	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgtgctgaaggtctacaatCtgtgacaaaagagaggaaag	12	5	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	202260067	A	A	202260067	3	1	227	1	0	0	0	0	1	0	0	0	16574	912	32	3	1910	3	TRAK2	2	202260067	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	5570937	202260067	40939306	128	172420											
BMPR2	659	broad.mit.edu	37	chr2	203378654	203378654	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaaaatagtctcaaaGttatgcaaaatacacccagc	4	8	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203378654	A	A	203378654	1	1	227	0	1	0	0	0	0	0	0	0	1477	1044	36	4		4	BMPR2	2	203378654	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1118587	203378654	39820719	129	172421											
DYTN	391475	broad.mit.edu	37	chr2	207527633	207527633	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaaaaccttacctgatgGcgtttctagattgaaggcat	10	7	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207527633	A	A	207527633	3	1	227	1	0	0	0	0	1	0	0	0	4901	1203	42	4	117	4	DYTN	2	207527633	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	4148979	207527633	35671740	130	172422											
MYL1	4632	broad.mit.edu	37	chr2	211155712	211155712	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaagttttaaaaaacacaAtatcaagaaatccttaaata	3	6	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	211155712	G	G	211155712	1	3	227	0	1	0	0	0	0	0	0	0	10137	116	4	5		5	MYL1	2	211155712	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	3628079	211155712	32043661	131	172423											
CXCR2	3579	broad.mit.edu	37	chr2	219000278	219000278	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcaccgggccatgcggGtcatctttgctgtcgtcctc	12	13	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219000278	T	T	219000278	3	4	227	1	0	0	0	0	1	0	0	0	4124	1261	44	3	756	3	CXCR2	2	219000278	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	7844566	219000278	24199095	132	172424											
PRKAG3	53632	broad.mit.edu	37	chr2	219692034	219692034	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtacgttgcctgacaccGggtcaagaacaggcaggcga	15	10	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219692034	T	T	219692034	3	4	227	1	0	0	0	0	1	0	0	0	12608	1116	39	1	551	1	PRKAG3	2	219692034	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	691756	219692034	23507339	133	172425											
CUL3	8452	broad.mit.edu	37	chr2	225362561	225362561	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccactgtgtttggctaagTagaaccttcagtaaatcaaa	8	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	225362561	C	C	225362561	3	2	227	1	0	0	0	0	1	0	0	0	4089	1638	57	5	710	5	CUL3	2	225362561	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	5670527	225362561	17836812	134	172426											
SP140	11262	broad.mit.edu	37	chr2	231150584	231150584	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgctttccctttgccctacAggtcaatacaaattttactg	5	13	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	231150584	T	T	231150584	1	4	227	0	1	0	0	0	0	0	0	0	15076	203	7	5		5	SP140	2	231150584	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	5788023	231150584	12048789	135	172427											
NCL	4691	broad.mit.edu	37	chr2	232327375	232327375	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacctgagcacaattcagTgctcagctgtctttatagtg	9	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	232327375	G	G	232327375	1	3	227	0	1	0	0	0	0	0	0	0	10321	1711	59	5		5	NCL	2	232327375	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1176791	232327375	10871998	136	172428											
GIGYF2	26058	broad.mit.edu	37	chr2	233594298	233594298	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaaagcagtgatctgctTctccagcttatctgttccaa	6	11	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	233594298	G	G	233594298	1	3	227	0	1	0	0	0	0	0	0	0	6442	1798	62	5		5	GIGYF2	2	233594298	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1266923	233594298	9605075	137	172429											
CXCR7	57007	broad.mit.edu	37	chr2	237489646	237489646	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcgtgtctctgcctgacAcctactacctgaagaccgtc	8	15	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237489646	G	G	237489646	3	3	227	1	0	0	0	0	1	0	0	0	4129	159	6	5	540	5	CXCR7	2	237489646	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	3895348	237489646	5709727	138	172430											
COL6A3	1293	broad.mit.edu	37	chr2	238277679	238277679	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cattgctgaactgcacgaccCcaactctcactttactgggg	8	14	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	238277679	G	G	238277679	3	3	227	1	0	0	0	0	1	0	0	0	3733	623	22	4	5246	4	COL6A3	2	238277679	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	788033	238277679	4921694	139	172431											
HDLBP	3069	broad.mit.edu	37	chr2	242194375	242194375	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaccagttttcaagggcatCcacagtacaaaggtcaacaa	7	11	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	242194375	T	T	242194375	1	4	227	0	1	0	0	0	0	0	0	0	7092	870	30	4		4	HDLBP	2	242194375	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	3916696	242194375	1004998	140	172432											
SUMF1	285362	broad.mit.edu	37	chr3	4458925	4458925	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgttgccccaggggaaaaGtctgtcagaagagacacagg	13	8	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4458925	C	C	4458925	3	2	227	1	0	0	0	0	1	0	0	0	15503	1043	36	4	413	4	SUMF1	3	4458925	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08		4458925	193563505	141	172433											
RFTN1	23180	broad.mit.edu	37	chr3	16475314	16475314	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctctattgagcataacTtagccgcaacaggatgctac	7	13	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	16475314	G	G	16475314	1	3	227	0	1	0	0	0	0	0	0	0	13366	1624	56	5		5	RFTN1	3	16475314	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	12016389	16475314	181547116	142	172434											
OXSR1	9943	broad.mit.edu	37	chr3	38287589	38287589	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccaacaactgatcctgtGggtactttgctccaagttcc	7	12	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38287589	T	T	38287589	2	4	227	1	0	0	0	0	0	0	0	1	11430	1335	47	2		2	OXSR1	3	38287589	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	21812275	38287589	159734841	143	172435											
TKT	7086	broad.mit.edu	37	chr3	53262099	53262099	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcagttcggcagcggccaAggcctcgtgcagggtcaccc	14	15	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53262099	T	T	53262099	3	4	227	1	0	0	0	0	1	0	0	0	16057	69	3	5	337	5	TKT	3	53262099	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	14974510	53262099	144760331	144	172436											
CACNA1D	776	broad.mit.edu	37	chr3	53760942	53760942	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	actggaatgctgtgatgtacGatggcatcatggcttacggg	14	7	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53760942	T	T	53760942	3	4	227	1	0	0	0	0	1	0	0	0	2567	1058	37	3	2367	3	CACNA1D	3	53760942	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	498843	53760942	144261488	145	172437											
SENP7	57337	broad.mit.edu	37	chr3	101133438	101133438	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcatcccaactatgacCaagaagatgaaggaagctct	7	12	2	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101133438	A	A	101133438	1	1	227	0	1	0	0	0	0	0	0	0	14164	609	21	2		2	SENP7	3	101133438	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	47372496	101133438	96888992	146	172438											
GRAMD1C	54762	broad.mit.edu	37	chr3	113563456	113563456	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtagttaaaaaacaggGgccaaatttacataattgga	10	4	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113563456	T	T	113563456	3	4	227	1	0	0	0	0	1	0	0	0	6815	1232	43	2	140	2	GRAMD1C	3	113563456	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	12430018	113563456	84458974	147	172439											
SEMA5B	54437	broad.mit.edu	37	chr3	122645424	122645424	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgcacacgcgggccacGcgagagtacacggtgcgtcc	13	14	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122645424	T	T	122645424	2	4	227	1	0	0	0	0	0	0	0	1	14151	1074	38	3		3	SEMA5B	3	122645424	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	9081968	122645424	75377006	148	172440											
KALRN	8997	broad.mit.edu	37	chr3	124418854	124418854	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cagccttcccagcgagccctCggagtttgtgcgacttccag	11	15	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124418854	T	T	124418854	3	4	227	1	0	0	0	0	1	0	0	0	8045	893	31	4	8348	4	KALRN	3	124418854	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1773430	124418854	73603576	149	172441											
MGLL	11343	broad.mit.edu	37	chr3	127411244	127411244	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagaccgtgggcagtgggCaggggtctgcagcattctcc	17	11	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127411244	A	A	127411244	1	1	227	0	1	0	0	0	0	0	0	0	9649	725	25	3		3	MGLL	3	127411244	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2992390	127411244	70611186	150	172442											
IFT122	55764	broad.mit.edu	37	chr3	129222991	129222991	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgccttttgttttcgaagAgctgatttgtttttgcattt	8	5	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129222991	G	G	129222991	1	3	227	0	1	0	0	0	0	0	0	0	7625	319	11	5		5	IFT122	3	129222991	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	1811747	129222991	68799439	151	172443											
IFT122	55764	broad.mit.edu	37	chr3	129236548	129236548	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgggccatgctgagcctgGccctgtgttcccagagagat	14	13	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129236548	A	A	129236548	1	1	227	0	1	0	0	0	0	0	0	0	7625	1218	42	4		4	IFT122	3	129236548	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	13557	129236548	68785882	152	172444											
TXNDC6	347736	broad.mit.edu	37	chr3	138043808	138043808	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaatgccgtattactgaGggctcaggcagggaaacaat	11	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138043808	T	T	138043808	1	4	227	0	1	0	0	0	0	0	0	0	16926	1015	35	2		2	TXNDC6	3	138043808	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	8807260	138043808	59978622	153	172445											
PRR23C	389152	broad.mit.edu	37	chr3	138763205	138763205	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagacactcgcaggacCgacattggcgcgagctccag	12	14	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138763205	G	G	138763205	2	3	227	1	0	0	0	0	0	0	0	1	12702	639	23	4		4	PRR23C	3	138763205	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	719397	138763205	59259225	154	172446											
FAM194A	131831	broad.mit.edu	37	chr3	150384584	150384584	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtacctaccttcactttgGttccaacactgattcttgcc	5	13	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150384584	T	T	150384584	3	4	227	1	0	0	0	0	1	0	0	0	5573	1261	44	3	281	3	FAM194A	3	150384584	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	11621379	150384584	47637846	155	172447											
IGSF10	285313	broad.mit.edu	37	chr3	151176394	151176394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacctccgtaggcatataaCaggcacagcggcgaggacag	13	11	0	0	rs138815446		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151176394	A	A	151176394	3	1	227	1	0	0	0	0	1	0	0	0	7667	478	17	3	7839	3	IGSF10	3	151176394	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	791810	151176394	46846036	156	172448											
RSRC1	51319	broad.mit.edu	37	chr3	157994018	157994018	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tcggccaccatggcgaatacGaatcctatatataatgtaac	7	10	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157994018	T	T	157994018	1	4	227	0	1	0	0	0	0	0	0	0	13825	1073	37	3		3	RSRC1	3	157994018	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	6817624	157994018	40028412	157	172449											
MFSD1	64747	broad.mit.edu	37	chr3	158527041	158527041	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaggcaaagaattaaacCtggtgtttggacttcaactt	8	6	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158527041	T	T	158527041	2	4	227	1	0	0	0	0	0	0	0	1	9620	680	24	4		4	MFSD1	3	158527041	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	533023	158527041	39495389	158	172450											
SI	6476	broad.mit.edu	37	chr3	164760926	164760926	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atcttctgcaaagttcttctGtggtttcagccacaaatcca	6	11	5	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	164760926	C	C	164760926	3	2	227	1	0	0	0	0	1	0	0	0	14410	1377	48	4	3686	4	SI	3	164760926	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	6233885	164760926	33261504	159	172451											
SKIL	6498	broad.mit.edu	37	chr3	170108188	170108188	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcatggaagaagtaatgaGaacttatttaaaacaacagg	8	4	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170108188	T	T	170108188	3	4	227	1	0	0	0	0	1	0	0	0	14471	942	33	3	1621	3	SKIL	3	170108188	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	5347262	170108188	27914242	160	172452											
NAALADL2	254827	broad.mit.edu	37	chr3	175184977	175184977	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatgaatggggagaggtaaAgcaaaatatacattaattac	9	3	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	175184977	T	T	175184977	1	4	227	0	1	0	0	0	0	0	0	0	10224	87	3	5		5	NAALADL2	3	175184977	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	5076789	175184977	22837453	161	172453											
USP13	8975	broad.mit.edu	37	chr3	179437811	179437811	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	attttggaattgatatgcttCatatgcatggggtgaggtct	12	4	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179437811	A	A	179437811	3	1	227	1	0	0	0	0	1	0	0	0	17170	826	29	3	915	3	USP13	3	179437811	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	4252834	179437811	18584619	162	172454											
PARL	55486	broad.mit.edu	37	chr3	183605618	183605618	+	5'Flank	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagagggctgtgctgaagtTtgctgctgccactggagcca	14	11	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183605618	A	A	183605618	1	1	227	0	1	0	0	0	0	0	0	0	11545	1856	64	5		5	PARL	3	183605618	5'Flank	SNP	T	TCGA-91-6831-01A-11D-1855-08	4167807	183605618	14416812	163	172455											
EIF4G1	1981	broad.mit.edu	37	chr3	184052638	184052638	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagggtgtggcccttaaatCtgtcacagccttcttcaagt	9	11	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	184052638	T	T	184052638	3	4	227	1	0	0	0	0	1	0	0	0	5078	913	32	4	4864	4	EIF4G1	3	184052638	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	447020	184052638	13969792	164	172456											
ETV5	2119	broad.mit.edu	37	chr3	185797643	185797643	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggttttcaggcatcatctTtggcatctgcaggggctgat	12	9	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	185797643	G	G	185797643	3	3	227	1	0	0	0	0	1	0	0	0	5324	1850	64	5	947	5	ETV5	3	185797643	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	1745005	185797643	12224787	165	172457											
DNAJB11	51726	broad.mit.edu	37	chr3	186299186	186299186	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaacaaacctgtggcaagGcaggctcctggcaaacggaa	12	10	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186299186	A	A	186299186	2	1	227	1	0	0	0	0	0	0	0	1	4656	1194	42	4		4	DNAJB11	3	186299186	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	501543	186299186	11723244	166	172458											
ATP13A4	84239	broad.mit.edu	37	chr3	193188773	193188773	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggacgcgtgattccagctctTgaactccagctgaaagtggg	13	10	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193188773	A	A	193188773	3	1	227	1	0	0	0	0	1	0	0	0	1130	1812	63	5	2860	5	ATP13A4	3	193188773	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	6889587	193188773	4833657	167	172459											
ATP13A4	84239	broad.mit.edu	37	chr3	193210950	193210950	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcactttgatgcatctcacCtgcaaaagaaaagtactaag	7	9	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	193210950	A	A	193210950	5	1	227	1	0	0	0	0	0	0	1	0	1130	695	24	2	3317	2	ATP13A4	3	193210950	Splice_Site	SNP	C	TCGA-91-6831-01A-11D-1855-08	22177	193210950	4811480	168	172460											
ZDHHC19	131540	broad.mit.edu	37	chr3	195937568	195937568	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagagggagcctgtgataaCaggaaaggcccactccccgt	12	11	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	195937568	A	A	195937568	3	1	227	1	0	0	0	0	1	0	0	0	17735	478	17	3	766	3	ZDHHC19	3	195937568	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2726618	195937568	2084862	169	172461											
PDE6B	5158	broad.mit.edu	37	chr4	663805	663805	+	Intron	DEL	C	-	-													gctggtgtgcacaggtggttCcactcaccatcttctgtctt							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	663805	-	-	663805	6	5	227	0	1	1	0	1	0	0	0	0	11740	870	30	0		0	PDE6B	4	663805	Intron	DEL	C	TCGA-91-6831-01A-11D-1855-08		663805	190490471	170	172462											
HTT	3064	broad.mit.edu	37	chr4	3225021	3225021	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacagaaatcctttggtaGcacttaaggctcctcttcct	7	12	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3225021	T	T	3225021	1	4	227	0	1	0	0	0	0	0	0	0	7527	986	34	3		3	HTT	4	3225021	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2561216	3225021	187929255	171	172463											
STK32B	55351	broad.mit.edu	37	chr4	5461853	5461853	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaccaaggatcctgagagCcgcgtgtccagccttcatga	11	13	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5461853	T	T	5461853	2	4	227	1	0	0	0	0	0	0	0	1	15416	738	26	4		4	STK32B	4	5461853	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	2236832	5461853	185692423	172	172464											
MED28	80306	broad.mit.edu	37	chr4	17616296	17616296	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggcggctccactagggGgtatgttttctgggcagcca	14	10	1	0	rs10028056	byFrequency	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17616296	T	T	17616296	3	4	227	1	0	0	0	0	1	0	0	0	9539	1232	43	2	21	2	MED28	4	17616296	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	12154443	17616296	173537980	173	172465											
SLIT2	9353	broad.mit.edu	37	chr4	20530758	20530758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaattctggttgggatGgagggaatgaaagcattaaa	12	3	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20530758	T	T	20530758	1	4	227	0	1	0	0	0	0	0	0	0	14854	1363	47	2		2	SLIT2	4	20530758	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2914462	20530758	170623518	174	172466											
PPARGC1A	10891	broad.mit.edu	37	chr4	23826016	23826016	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tataaaaacaaactgaaatgGagttgctgtagccaaatgta	8	5	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23826016	T	T	23826016	1	4	227	0	1	0	0	0	0	0	0	0	12396	1189	41	3		3	PPARGC1A	4	23826016	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3295258	23826016	167328260	175	172467											
ZCCHC4	29063	broad.mit.edu	37	chr4	25317109	25317109	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctttaagtttactttcAtttatttatttttattgtag	5	4	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25317109	G	G	25317109	1	3	227	0	1	0	0	0	0	0	0	0	17716	232	8	5		5	ZCCHC4	4	25317109	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	1491093	25317109	165837167	176	172468											
TLR6	10333	broad.mit.edu	37	chr4	38829311	38829311	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcacagccaacaccagcAtggtggcaccgatggtgacg	12	13	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	38829311	C	C	38829311	3	2	227	1	0	0	0	0	1	0	0	0	16078	217	8	5	610	5	TLR6	4	38829311	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	13512202	38829311	152324965	177	172469											
WDR19	57728	broad.mit.edu	37	chr4	39280317	39280317	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcccacgcaccttctgggcGcaagggcccacagcgtgcac	12	18	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39280317	A	A	39280317	1	1	227	0	1	0	0	0	0	0	0	0	17406	1102	38	4		4	WDR19	4	39280317	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	451006	39280317	151873959	178	172470											
SLAIN2	57606	broad.mit.edu	37	chr4	48384770	48384770	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caccatcaccacgcaattcaCctcgaccgtcacctaagcag	5	18	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48384770	T	T	48384770	3	4	227	1	0	0	0	0	1	0	0	0	14479	507	18	4	1066	4	SLAIN2	4	48384770	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	9104453	48384770	142769506	179	172471											
LNX1	84708	broad.mit.edu	37	chr4	54327665	54327665	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgatgaaaaaaggtttgTttccattgtattcttcataa	6	4	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	54327665	C	C	54327665	3	2	227	1	0	0	0	0	1	0	0	0	8939	1725	60	5	206	5	LNX1	4	54327665	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	5942895	54327665	136826611	180	172472											
AASDH	132949	broad.mit.edu	37	chr4	57220831	57220831	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaacacatcagatcattttTcttgaaaaaaaaattcccaa	2	8	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57220831	G	G	57220831	1	3	227	0	1	0	0	0	0	0	0	0	22	1798	62	5		5	AASDH	4	57220831	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	2893166	57220831	133933445	181	172473											
EPHA5	2044	broad.mit.edu	37	chr4	66218804	66218804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attctccatatactctgtcaCgatcatcactggtttacctg	5	12	5	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66218804	A	A	66218804	3	1	227	1	0	0	0	0	1	0	0	0	5212	536	19	3	883	3	EPHA5	4	66218804	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	8997973	66218804	124935472	182	172474											
TMPRSS11A	339967	broad.mit.edu	37	chr4	68812313	68812313	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaggaagggcccactgGttactctcagatagcaatgc	11	9	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68812313	T	T	68812313	1	4	227	0	1	0	0	0	0	0	0	0	16362	1276	44	3		3	TMPRSS11A	4	68812313	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2593509	68812313	122341963	183	172475											
AFF1	4299	broad.mit.edu	37	chr4	88016155	88016155	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttgtgtattaaaattttGtagtatgaaattgtaatgtc	7	1	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	88016155	A	A	88016155	1	1	227	0	1	0	0	0	0	0	0	0	356	1392	48	4		4	AFF1	4	88016155	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	19203842	88016155	103138121	184	172476											
EGF	1950	broad.mit.edu	37	chr4	110884190	110884190	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagagtgccattgcactcCagcctgggtgaaagagtgaa	13	10	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110884190	T	T	110884190	1	4	227	0	1	0	0	0	0	0	0	0	5002	609	21	4		4	EGF	4	110884190	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	22868035	110884190	80270086	185	172477											
EGF	1950	broad.mit.edu	37	chr4	110901026	110901026	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgagtagctaaagagctgAtttagtgtaggaatgttgtg	14	3	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110901026	T	T	110901026	1	4	227	0	1	0	0	0	0	0	0	0	5002	348	12	5		5	EGF	4	110901026	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	16836	110901026	80253250	186	172478											
FAT4	79633	broad.mit.edu	37	chr4	126241071	126241071	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acagggagtctcttatgaggCggagagggactgctgtgttt	16	6	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126241071	T	T	126241071	3	4	227	1	0	0	0	0	1	0	0	0	5749	759	27	4	3507	4	FAT4	4	126241071	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	15340045	126241071	64913205	187	172479											
FAT4	79633	broad.mit.edu	37	chr4	126412622	126412622	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgatgcagatgatgaagAtaattatggagccagactga	11	5	1	7			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	126412622	G	G	126412622	3	3	227	1	0	0	0	0	1	0	0	0	5749	333	12	5	14711	5	FAT4	4	126412622	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	171551	126412622	64741654	188	172480											
KIAA0922	23240	broad.mit.edu	37	chr4	154523898	154523898	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaaaccactactgtctcCcttgttctctcactgagtag	7	12	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154523898	A	A	154523898	1	1	227	0	1	0	0	0	0	0	0	0	8271	638	22	2		2	KIAA0922	4	154523898	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	28111276	154523898	36630378	189	172481											
ACCN5	51802	broad.mit.edu	37	chr4	156775470	156775470	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcatctgtttggaacctaTtagcaggaatgaaggcaata	10	7	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156775470	C	C	156775470	1	2	227	0	1	0	0	0	0	0	0	0	132	1508	52	5		5	ACCN5	4	156775470	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	2251572	156775470	34378806	190	172482											
KIAA1712	80817	broad.mit.edu	37	chr4	175223359	175223359	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattttgagtttatcaaacaAtaactattagttattgaatg	5	3	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	175223359	G	G	175223359	1	3	227	0	1	0	0	0	0	0	0	0	8323	116	4	5		5	KIAA1712	4	175223359	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	18447889	175223359	15930917	191	172483											
ACSL1	2180	broad.mit.edu	37	chr4	185678833	185678833	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atccttcccaagtctcaccaTatcttcgaggatagcttttt	5	12	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185678833	C	C	185678833	3	2	227	1	0	0	0	0	1	0	0	0	177	1406	49	5	192	5	ACSL1	4	185678833	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	10455474	185678833	5475443	192	172484											
SLC6A18	348932	broad.mit.edu	37	chr5	1232411	1232411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtcgagctcgccatcggcCagcggctgcggaagggcagc	16	14	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1232411	A	A	1232411	3	1	227	1	0	0	0	0	1	0	0	0	14795	595	21	2	244	2	SLC6A18	5	1232411	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08		1232411	179682849	193	172485											
IRX1	79192	broad.mit.edu	37	chr5	3601123	3601123	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccccgcaggagggaacgcCgcggatcctagcagccctcc	14	17	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3601123	G	G	3601123	3	3	227	1	0	0	0	0	1	0	0	0	7913	652	23	4	1426	4	IRX1	5	3601123	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2368712	3601123	177314137	194	172486											
CTNND2	1501	broad.mit.edu	37	chr5	11236919	11236919	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacttccggcagttccgggtCtctccatccaaattctctga	7	15	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11236919	A	A	11236919	3	1	227	1	0	0	0	0	1	0	0	0	4054	913	32	3	2084	3	CTNND2	5	11236919	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	7635796	11236919	169678341	195	172487											
CDH12	1010	broad.mit.edu	37	chr5	21802463	21802463	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgccgagtgaaaccggtGgtcaaggtgaaggttggaag	17	8	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21802463	T	T	21802463	3	4	227	1	0	0	0	0	1	0	0	0	3128	1348	47	2	1339	2	CDH12	5	21802463	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	10565544	21802463	159112797	196	172488											
CDH10	1008	broad.mit.edu	37	chr5	24488183	24488183	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgttatagctcacaatgttGtctctgatatcttcttttga	6	8	4	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24488183	T	T	24488183	3	4	227	1	0	0	0	0	1	0	0	0	3126	1368	48	3	414	3	CDH10	5	24488183	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2685720	24488183	156427077	197	172489											
ADAMTS12	81792	broad.mit.edu	37	chr5	33549428	33549428	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcctcaggttccggtggtCccggctgtccacgcactgaa	13	14	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33549428	A	A	33549428	3	1	227	1	0	0	0	0	1	0	0	0	257	855	30	3	614	3	ADAMTS12	5	33549428	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	9061245	33549428	147365832	198	172490											
EGFLAM	133584	broad.mit.edu	37	chr5	38448410	38448410	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttctgtcccagcgatcatAgaagccattgagatcccgca	9	12	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38448410	T	T	38448410	2	4	227	1	0	0	0	0	0	0	0	1	5006	410	15	5		5	EGFLAM	5	38448410	Silent	SNP	A	TCGA-91-6831-01A-11D-1855-08	4898982	38448410	142466850	199	172491											
C7	730	broad.mit.edu	37	chr5	40976868	40976868	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagaaaatccgttaacacaGgcagtgcctaaatgtcagcg	9	9	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40976868	T	T	40976868	3	4	227	1	0	0	0	0	1	0	0	0	2400	991	35	2	2153	2	C7	5	40976868	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2528458	40976868	139938392	200	172492											
HEATR7B2	133558	broad.mit.edu	37	chr5	41055876	41055876	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagccaatcttaacaaagtcAagattcccactcgaatggct	6	12	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41055876	T	T	41055876	4	4	227	1	0	0	0	0	0	1	0	0	7102	131	5	5	3888	5	HEATR7B2	5	41055876	Nonsense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	79008	41055876	139859384	201	172493											
C6	729	broad.mit.edu	37	chr5	41149307	41149307	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagctgagatgaaggttaaGtgagagcatttagtatggtc	13	4	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41149307	A	A	41149307	1	1	227	0	1	0	0	0	0	0	0	0	2338	1044	36	4		4	C6	5	41149307	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	93431	41149307	139765953	202	172494											
MAP3K1	4214	broad.mit.edu	37	chr5	56171242	56171242	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agctactttacctaattttgGaaaatccaaattttattttt	3	6	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56171242	T	T	56171242	1	4	227	0	1	0	0	0	0	0	0	0	9335	1189	41	3		3	MAP3K1	5	56171242	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	15021935	56171242	124744018	203	172495											
SLC30A5	64924	broad.mit.edu	37	chr5	68404320	68404320	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtatgtatgtcacatattaTccaaaggaataaaatcttat	5	5	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68404320	C	C	68404320	1	2	227	0	1	0	0	0	0	0	0	0	14672	1450	50	5		5	SLC30A5	5	68404320	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	12233078	68404320	112510940	204	172496											
BTF3	689	broad.mit.edu	37	chr5	72798404	72798404	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaaagaagttaggggtaaAcaatatctctggtattgaag	10	4	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72798404	G	G	72798404	3	3	227	1	0	0	0	0	1	0	0	0	1561	43	2	5	303	5	BTF3	5	72798404	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	4394084	72798404	108116856	205	172497											
F2R	2149	broad.mit.edu	37	chr5	76029084	76029084	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctttctcacacttccaCcacagaggctgcctactttg	5	15	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76029084	A	A	76029084	3	1	227	1	0	0	0	0	1	0	0	0	5386	507	18	3	1040	3	F2R	5	76029084	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3230680	76029084	104886176	206	172498											
AP3B1	8546	broad.mit.edu	37	chr5	77512134	77512134	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtcttactcaggcattaTagtaatcagtttcatgccaa	7	8	4	0	rs138376622	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	77512134	G	G	77512134	1	3	227	0	1	0	0	0	0	0	0	0	746	1421	49	5		5	AP3B1	5	77512134	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1483050	77512134	103403126	207	172499											
RASGRF2	5924	broad.mit.edu	37	chr5	80363827	80363827	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagaacaatatctcaatgaCtaactgtgtaattttctctc	5	8	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80363827	T	T	80363827	1	4	227	0	1	0	0	0	0	0	0	0	13181	580	20	4		4	RASGRF2	5	80363827	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2851693	80363827	100551433	208	172500											
CCNH	902	broad.mit.edu	37	chr5	86703889	86703889	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagtagttcatattccagTatctgttcaagtgccttctc	7	9	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	86703889	C	C	86703889	3	2	227	1	0	0	0	0	1	0	0	0	2955	1628	57	5	566	5	CCNH	5	86703889	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	6340062	86703889	94211371	209	172501											
YTHDC2	64848	broad.mit.edu	37	chr5	112899487	112899487	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttatttctcatttagggGtttttaattatgtgttttga	7	3	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112899487	A	A	112899487	1	1	227	0	1	0	0	0	0	0	0	0	17624	1276	44	4		4	YTHDC2	5	112899487	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	26195598	112899487	68015773	210	172502											
KCNN2	3781	broad.mit.edu	37	chr5	113829247	113829247	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcactaatcatgaatgtttCaagaggatcccaacccaaat	6	10	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113829247	T	T	113829247	1	4	227	0	1	0	0	0	0	0	0	0	8149	841	29	4		4	KCNN2	5	113829247	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	929760	113829247	67086013	211	172503											
ZNF608	57507	broad.mit.edu	37	chr5	123980150	123980150	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cttgctctcctccattgattGagaatcaggatgcttggcct	9	11	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123980150	C	C	123980150	3	2	227	1	0	0	0	0	1	0	0	0	18161	1299	45	4	648	4	ZNF608	5	123980150	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	10150903	123980150	56935110	212	172504											
FBN2	2201	broad.mit.edu	37	chr5	127704944	127704944	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggattggcacagcagcattCggacttggtcactgcaccgg	13	11	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127704944	T	T	127704944	3	4	227	1	0	0	0	0	1	0	0	0	5760	893	31	4	6759	4	FBN2	5	127704944	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3724794	127704944	53210316	213	172505											
RAD50	10111	broad.mit.edu	37	chr5	131976663	131976663	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccctgggctttacctttTgatagtaattcttcagatcc	8	10	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131976663	C	C	131976663	1	2	227	0	1	0	0	0	0	0	0	0	13092	1827	63	5		5	RAD50	5	131976663	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	4271719	131976663	48938597	214	172506											
PHF15	23338	broad.mit.edu	37	chr5	133895718	133895718	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaatgggatcacggctgGgcagggagggttttctcccc	15	9	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133895718	T	T	133895718	1	4	227	0	1	0	0	0	0	0	0	0	11921	1247	43	2		2	PHF15	5	133895718	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1919055	133895718	47019542	215	172507											
CATSPER3	347732	broad.mit.edu	37	chr5	134331898	134331898	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccggggctcacgcagggAgcaggccagagctctagggc	16	13	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	134331898	T	T	134331898	1	4	227	0	1	0	0	0	0	0	0	0	2715	319	11	5		5	CATSPER3	5	134331898	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	436180	134331898	46583362	216	172508											
KDM3B	51780	broad.mit.edu	37	chr5	137727539	137727539	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcccattgagatgccaActctctcctctagccccaca	5	18	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137727539	T	T	137727539	3	4	227	1	0	0	0	0	1	0	0	0	8197	43	2	5	2248	5	KDM3B	5	137727539	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	3395641	137727539	43187721	217	172509											
PCDHA1	56147	broad.mit.edu	37	chr5	140166206	140166206	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tccacctggagttgatcgccGacaggccgctgcaggttttc	12	13	0	1	rs148838866		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140166206	A	A	140166206	3	1	227	1	0	0	0	0	1	0	0	0	11613	1058	37	4	333	4	PCDHA1	5	140166206	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2438667	140166206	40749054	218	172510											
PCDHA10	56139	broad.mit.edu	37	chr5	140237382	140237382	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgagctggtgctgcggtcGgtggttgcgggtcacgtggt	20	7	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140237382	A	A	140237382	2	1	227	1	0	0	0	0	0	0	0	1	11614	1103	39	4		4	PCDHA10	5	140237382	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	71176	140237382	40677878	219	172511											
PCDHB4	56131	broad.mit.edu	37	chr5	140503277	140503277	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctgtacccgctgcagaAtggctccgcgccctgcaccg	12	17	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140503277	G	G	140503277	3	3	227	1	0	0	0	0	1	0	0	0	11638	101	4	5	1699	5	PCDHB4	5	140503277	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	265895	140503277	40411983	220	172512											
PCDHB5	26167	broad.mit.edu	37	chr5	140515983	140515983	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaattgtagccacagatGgtgggggcctttcaggaaaa	14	6	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140515983	T	T	140515983	3	4	227	1	0	0	0	0	1	0	0	0	11639	1348	47	2	969	2	PCDHB5	5	140515983	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	12706	140515983	40399277	221	172513											
PCDHB8	56128	broad.mit.edu	37	chr5	140559014	140559014	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgtccgcgagaacaacagcCccgccctgcacatcggcagc	10	18	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	140559014	G	G	140559014	3	3	227	1	0	0	0	0	1	0	0	0	11642	623	22	4	1401	4	PCDHB8	5	140559014	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	43031	140559014	40356246	222	172514											
ARAP3	64411	broad.mit.edu	37	chr5	141036033	141036033	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatggctcctctccatggCcacccagcatcccacacctc	6	20	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141036033	T	T	141036033	1	4	227	0	1	0	0	0	0	0	0	0	842	754	26	4		4	ARAP3	5	141036033	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	477019	141036033	39879227	223	172515											
RBM27	54439	broad.mit.edu	37	chr5	145634378	145634378	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccctcacagatactgagagGtgactgtaggttgatgtatt	11	7	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	145634378	C	C	145634378	1	2	227	0	1	0	0	0	0	0	0	0	13235	1276	44	4		4	RBM27	5	145634378	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	4598345	145634378	35280882	224	172516											
SAP30L	79685	broad.mit.edu	37	chr5	153835450	153835450	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaactttggtattttccCcccacatagactgtgagtcg	9	10	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153835450	T	T	153835450	1	4	227	0	1	0	0	0	0	0	0	0	13947	638	22	4		4	SAP30L	5	153835450	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	8201072	153835450	27079810	225	172517											
KIF4B	285643	broad.mit.edu	37	chr5	154394083	154394083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttacaatctccatagagCaaagaaagaaaagtgacaag	7	7	2	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154394083	A	A	154394083	3	1	227	1	0	0	0	0	1	0	0	0	8374	711	25	3	666	3	KIF4B	5	154394083	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	558633	154394083	26521177	226	172518											
KIF4B	285643	broad.mit.edu	37	chr5	154396412	154396412	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaactgatcctcctccAggtagccagcagacagaaac	9	13	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154396412	T	T	154396412	3	4	227	1	0	0	0	0	1	0	0	0	8374	188	7	5	2995	5	KIF4B	5	154396412	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	2329	154396412	26518848	227	172519											
ODZ2	57451	broad.mit.edu	37	chr5	167630602	167630602	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaatctgtattactgcgaAcacgtgcttctcattcttgc	7	11	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167630602	T	T	167630602	1	4	227	0	1	0	0	0	0	0	0	0	10930	58	2	5		5	ODZ2	5	167630602	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	13234190	167630602	13284658	228	172520											
DOCK2	1794	broad.mit.edu	37	chr5	169494560	169494560	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagaaaccatgtccacggCcaatgagaagatcctgatga	9	10	0	5			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169494560	A	A	169494560	3	1	227	1	0	0	0	0	1	0	0	0	4727	739	26	3	4692	3	DOCK2	5	169494560	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1863958	169494560	11420700	229	172521											
C5orf58	133874	broad.mit.edu	37	chr5	169673169	169673169	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgaactaacaaatatttgGgagagttgagtttactaatt	9	3	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169673169	C	C	169673169	1	2	227	0	1	0	0	0	0	0	0	0	2336	1247	43	4		4	C5orf58	5	169673169	3'UTR	SNP	G	TCGA-91-6831-01A-11D-1855-08	178609	169673169	11242091	230	172522											
C5orf25	375484	broad.mit.edu	37	chr5	175717845	175717845	+	Frame_Shift_Del	DEL	C	-	-													cccacgtacaatcacgaacaCcacaaggtgggttgtacaac							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	175717845	-	-	175717845	7	5	227	1	0	1	0	1	0	0	0	0	2311	522	18	0		0	C5orf25	5	175717845	Frame_Shift_Del	DEL	C	TCGA-91-6831-01A-11D-1855-08	6044676	175717845	5197415	231	172523											
GRK6	2870	broad.mit.edu	37	chr5	176867850	176867850	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacgaggtgggggcctgCcctgctggtggggtgggctc	20	10	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176867850	T	T	176867850	1	4	227	0	1	0	0	0	0	0	0	0	6859	754	26	4		4	GRK6	5	176867850	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	1150005	176867850	4047410	232	172524											
ADAMTS2	9509	broad.mit.edu	37	chr5	178552078	178552078	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttggcgtgcacggagcGggtggtgttgtcgtgtagcg	20	7	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	178552078	C	C	178552078	3	2	227	1	0	0	0	0	1	0	0	0	265	1116	39	4	797	4	ADAMTS2	5	178552078	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1684228	178552078	2363182	233	172525											
BTNL8	79908	broad.mit.edu	37	chr5	180335652	180335652	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gggggaggacgcagcattctCctgtttcctgtctcctaaga	12	11	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180335652	G	G	180335652	3	3	227	1	0	0	0	0	1	0	0	0	1577	855	30	4	148	4	BTNL8	5	180335652	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1783574	180335652	579608	234	172526											
BTNL8	79908	broad.mit.edu	37	chr5	180376167	180376167	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagggtcccaatccttgGtctttcccttctccctgcgc	7	15	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	180376167	T	T	180376167	1	4	227	0	1	0	0	0	0	0	0	0	1577	1276	44	3		3	BTNL8	5	180376167	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	40515	180376167	539093	235	172527											
F13A1	2162	broad.mit.edu	37	chr6	6266993	6266993	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tttccactttgtaactctgaGactataggcactgggatgta	9	8	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6266993	C	C	6266993	2	2	227	1	0	0	0	0	0	0	0	1	5383	929	33	4		4	F13A1	6	6266993	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08		6266993	164848074	236	172528											
DTNBP1	84062	broad.mit.edu	37	chr6	15524529	15524529	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctcaactcaccaaagttAccggagtggagcatgtcaaa	9	11	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15524529	G	G	15524529	1	3	227	0	1	0	0	0	0	0	0	0	4830	406	14	5		5	DTNBP1	6	15524529	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	9257536	15524529	155590538	237	172529											
ZNF391	346157	broad.mit.edu	37	chr6	27368575	27368575	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttttgaatgcaacaaatgTgggaaatctttcagccgaag	9	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27368575	C	C	27368575	2	2	227	1	0	0	0	0	0	0	0	1	18006	1702	59	5		5	ZNF391	6	27368575	Silent	SNP	T	TCGA-91-6831-01A-11D-1855-08	11844046	27368575	143746492	238	172530											
ZKSCAN4	387032	broad.mit.edu	37	chr6	28213789	28213789	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggcaactgtgggttatgCcctgccatgggaggaaagct	15	10	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28213789	T	T	28213789	1	4	227	0	1	0	0	0	0	0	0	0	17815	754	26	4		4	ZKSCAN4	6	28213789	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	845214	28213789	142901278	239	172531											
MOG	4340	broad.mit.edu	37	chr6	29638016	29638016	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggtgggtggggcatgaggGggaacacatgttaaccctgt	17	7	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29638016	C	C	29638016	1	2	227	0	1	0	0	0	0	0	0	0	9787	1247	43	4		4	MOG	6	29638016	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1424227	29638016	141477051	240	172532											
MDC1	9656	broad.mit.edu	37	chr6	30676135	30676135	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggttcatctagggtacCtggaaggggaggaaggaaga	16	6	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30676135	A	A	30676135	5	1	227	1	0	0	0	0	0	0	1	0	9496	695	24	2	4080	2	MDC1	6	30676135	Splice_Site	SNP	C	TCGA-91-6831-01A-11D-1855-08	1038119	30676135	140438932	241	172533											
EHMT2	10919	broad.mit.edu	37	chr6	31864667	31864667	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtttagggaaggtgacGgtccaattggggcccgtttt	15	7	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31864667	T	T	31864667	1	4	227	0	1	0	0	0	0	0	0	0	5024	1131	39	1		1	EHMT2	6	31864667	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1188532	31864667	139250400	242	172534											
COL11A2	1302	broad.mit.edu	37	chr6	33156836	33156836	+	Frame_Shift_Del	DEL	C	-	-													tctggtcttcatacaggaagCggacaggtcggcccagctcc					rs148765616		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33156836	-	-	33156836	7	5	227	1	0	1	0	1	0	0	0	0	3700	768	27	0	5179	0	COL11A2	6	33156836	Frame_Shift_Del	DEL	C	TCGA-91-6831-01A-11D-1855-08	1292169	33156836	137958231	243	172535											
RGL2	5863	broad.mit.edu	37	chr6	33264242	33264242	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagattcaagggcttccagcCtgagggggagaagaggatct	16	7	2	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33264242	A	A	33264242	5	1	227	1	0	0	0	0	0	0	1	0	13385	695	24	2	1970	2	RGL2	6	33264242	Splice_Site	SNP	C	TCGA-91-6831-01A-11D-1855-08	107406	33264242	137850825	244	172536											
DAXX	1616	broad.mit.edu	37	chr6	33290711	33290711	+	5'UTR	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggttccctccgccttccttCccactcccaccgcaggcccc	6	23	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33290711	T	T	33290711	1	4	227	0	1	0	0	0	0	0	0	0	4276	870	30	4		4	DAXX	6	33290711	5'UTR	SNP	C	TCGA-91-6831-01A-11D-1855-08	26469	33290711	137824356	245	172537											
KIF6	221458	broad.mit.edu	37	chr6	39513450	39513450	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttccaaaaaggatgttAttagtttttccagcctaaaa	7	7	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39513450	T	T	39513450	3	4	227	1	0	0	0	0	1	0	0	0	8378	449	16	5	1300	5	KIF6	6	39513450	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	6222739	39513450	131601617	246	172538											
TREML4	285852	broad.mit.edu	37	chr6	41196869	41196869	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccctcccatgcctctatcAtcccccatcctgccaggtat	4	21	2	0	rs144109577	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41196869	T	T	41196869	1	4	227	0	1	0	0	0	0	0	0	0	16598	232	8	5		5	TREML4	6	41196869	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	1683419	41196869	129918198	247	172539											
TREML4	285852	broad.mit.edu	37	chr6	41197729	41197729	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctctccccttcctctcacaCttttgggacccaatcccatt	3	19	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41197729	G	G	41197729	1	3	227	0	1	0	0	0	0	0	0	0	16598	580	20	4		4	TREML4	6	41197729	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	860	41197729	129917338	248	172540											
ZNF318	24149	broad.mit.edu	37	chr6	43323188	43323188	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaacggcggtcagctgaGgagcgtaatgatggcttctt	16	7	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43323188	A	A	43323188	2	1	227	1	0	0	0	0	0	0	0	1	17962	987	35	4		4	ZNF318	6	43323188	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	2125459	43323188	127791879	249	172541											
MAD2L1BP	9587	broad.mit.edu	37	chr6	43607850	43607850	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaactggagagtgtcctCagccacctggaggacttctt	12	11	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43607850	T	T	43607850	2	4	227	1	0	0	0	0	0	0	0	1	9237	813	29	4		4	MAD2L1BP	6	43607850	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	284662	43607850	127507217	250	172542											
PLA2G7	7941	broad.mit.edu	37	chr6	46684773	46684773	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aataaggcccatttccccggGggattttagtttggccaaag	11	9	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46684773	A	A	46684773	3	1	227	1	0	0	0	0	1	0	0	0	12104	1232	43	4	1195	4	PLA2G7	6	46684773	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	3076923	46684773	124430294	251	172543											
GFRAL	389400	broad.mit.edu	37	chr6	55196452	55196453	+	Intron	INS	-	T	T													tttatcattaataacttagaINStttgaagaaaatggatgcca							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55196453	T	T	55196452	6	5	227	0	1	1	1	0	0	0	0	0	6415	348	12	0		0	GFRAL	6	55196452	Intron	INS	-	TCGA-91-6831-01A-11D-1855-08	8511679	55196452	115918615	252	172544											
DST	667	broad.mit.edu	37	chr6	56485224	56485224	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcttccttctctctcacaAtggtttcaagttccctgcgg	8	14	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56485224	G	G	56485224	1	3	227	0	1	0	0	0	0	0	0	0	4823	101	4	5		5	DST	6	56485224	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	1288772	56485224	114629843	253	172545											
RIMS1	22999	broad.mit.edu	37	chr6	73108845	73108845	+	Intron	SNP	C	A	A													attgaaatgtctgttttaccCatacatcgaagagatggtca							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73108845	A	A	73108845	1	1	227	0	1	0	0	0	0	0	0	0	13478	609	21	2		2	RIMS1	6	73108845	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	16623621	73108845	98006222	254	172546	715	2									
RIMS1	22999	broad.mit.edu	37	chr6	73108849	73108849	+	Intron	SNP	C	A	A													aaatgtctgttttacccataCatcgaagagatggtcaaaca							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73108849	A	A	73108849	1	1	227	0	1	0	0	0	0	0	0	0	13478	493	17	3		3	RIMS1	6	73108849	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	4	73108849	98006218	255	172547	715	2									
DDX43	55510	broad.mit.edu	37	chr6	74124223	74124223	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tattatttttagatcttgggTtggtttataccagaatggtt	9	3	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74124223	A	A	74124223	1	1	227	0	1	0	0	0	0	0	0	0	4396	1740	60	5		5	DDX43	6	74124223	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1015374	74124223	96990844	256	172548											
RARS2	57038	broad.mit.edu	37	chr6	88229941	88229941	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcttcagcatttggaataCttgctgaaaatgcttttttt	7	6	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	88229941	G	G	88229941	3	3	227	1	0	0	0	0	1	0	0	0	13167	565	20	4	699	4	RARS2	6	88229941	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	14105718	88229941	82885126	257	172549											
UBE2J1	51465	broad.mit.edu	37	chr6	90045059	90045059	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagttctttggcttcttGgtcagcttggcttgaatcgc	11	10	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90045059	T	T	90045059	3	4	227	1	0	0	0	0	1	0	0	0	16986	1357	47	2	448	2	UBE2J1	6	90045059	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1815118	90045059	81070008	258	172550											
RTN4IP1	84816	broad.mit.edu	37	chr6	107035708	107035708	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gagcccatgtttcagtggatCcgccaacattatcaaggata	9	10	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107035708	A	A	107035708	3	1	227	1	0	0	0	0	1	0	0	0	13840	855	30	3	366	3	RTN4IP1	6	107035708	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	16990649	107035708	64079359	259	172551											
FYN	2534	broad.mit.edu	37	chr6	112024101	112024101	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggttacctgagtaatgttgTacaagctgctgaagtgtttc	11	6	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112024101	A	A	112024101	2	1	227	1	0	0	0	0	0	0	0	1	6186	1625	57	5		5	FYN	6	112024101	Silent	SNP	T	TCGA-91-6831-01A-11D-1855-08	4988393	112024101	59090966	260	172552											
HDAC2	3066	broad.mit.edu	37	chr6	114264527	114264527	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aatctgacctgtttttttgtCctctgtttctttcttatctt	4	9	5	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114264527	T	T	114264527	3	4	227	1	0	0	0	0	1	0	0	0	7074	855	30	4	112	4	HDAC2	6	114264527	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2240426	114264527	56850540	261	172553											
ROS1	6098	broad.mit.edu	37	chr6	117629963	117629963	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cataattaacttacagatcaTcaggacaatttcttggtggc	7	8	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	117629963	C	C	117629963	3	2	227	1	0	0	0	0	1	0	0	0	13642	1435	50	5	492	5	ROS1	6	117629963	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	3365436	117629963	53485104	262	172554											
OLIG3	167826	broad.mit.edu	37	chr6	137814807	137814807	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgcgcggggtggccggcCgagtggcccacggtcccgca	19	15	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137814807	T	T	137814807	2	4	227	1	0	0	0	0	0	0	0	1	10956	639	23	4		4	OLIG3	6	137814807	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	20184844	137814807	33300260	263	172555											
SYNE1	23345	broad.mit.edu	37	chr6	152489176	152489176	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cagttctggattaaggcttcCagcgtctatcctacaaaccc	7	13	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152489176	G	G	152489176	1	3	227	0	1	0	0	0	0	0	0	0	15564	609	21	4		4	SYNE1	6	152489176	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	14674369	152489176	18625891	264	172556											
IQCE	23288	broad.mit.edu	37	chr7	2645525	2645525	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagagctctcctgtgcccCgcgttccgagccccatcgcc	9	21	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2645525	T	T	2645525	3	4	227	1	0	0	0	0	1	0	0	0	7876	652	23	4	1837	4	IQCE	7	2645525	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08		2645525	156493138	265	172557											
MMD2	221938	broad.mit.edu	37	chr7	4949536	4949536	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gagaggatgaccagggcgggGaagaagcccattacgacgta	16	8	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4949536	C	C	4949536	3	2	227	1	0	0	0	0	1	0	0	0	9737	1165	41	4	235	4	MMD2	7	4949536	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2304011	4949536	154189127	266	172558											
SCIN	85477	broad.mit.edu	37	chr7	12683870	12683870	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgctagccaggaggaggaGaaaggagcagagtatgtagc	18	5	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12683870	A	A	12683870	2	1	227	1	0	0	0	0	0	0	0	1	14018	933	33	4		4	SCIN	7	12683870	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	7734334	12683870	146454793	267	172559											
DGKB	1607	broad.mit.edu	37	chr7	14378177	14378177	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactctttggcatctgtgacGgtggtccttttgtcagaccc	10	11	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14378177	C	C	14378177	2	2	227	1	0	0	0	0	0	0	0	1	4506	1103	39	4		4	DGKB	7	14378177	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	1694307	14378177	144760486	268	172560											
STK31	56164	broad.mit.edu	37	chr7	23760880	23760880	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctaacaaacgctacattttCaagactaagggaattactgg	7	9	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23760880	G	G	23760880	1	3	227	0	1	0	0	0	0	0	0	0	15414	841	29	4		4	STK31	7	23760880	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	9382703	23760880	135377783	269	172561											
AQP1	358	broad.mit.edu	37	chr7	30963182	30963182	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtggaccagcggccagGtggaggagtatgacctggat	18	7	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30963182	A	A	30963182	3	1	227	1	0	0	0	0	1	0	0	0	823	1261	44	4	1019	4	AQP1	7	30963182	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	7202302	30963182	128175481	270	172562											
PDE1C	5137	broad.mit.edu	37	chr7	31829844	31829844	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggcagcctcttttattGtctatgaggtcttttttact	7	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31829844	T	T	31829844	1	4	227	0	1	0	0	0	0	0	0	0	11729	1392	48	3		3	PDE1C	7	31829844	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	866662	31829844	127308819	271	172563											
TBX20	57057	broad.mit.edu	37	chr7	35271049	35271049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtgtcgaaaggagtgtGttgttacaaactccctcttc	10	9	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35271049	T	T	35271049	1	4	227	0	1	0	0	0	0	0	0	0	15778	1392	48	3		3	TBX20	7	35271049	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3441205	35271049	123867614	272	172564											
ZNF117	51351	broad.mit.edu	37	chr7	64442298	64442298	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagcataaatcaccaaaAacattctacaaaaaagagaa	4	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64442298	G	G	64442298	1	3	227	0	1	0	0	0	0	0	0	0	17843	29	1	5		5	ZNF117	7	64442298	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	29171249	64442298	94696365	273	172565											
TRIM50	135892	broad.mit.edu	37	chr7	72732638	72732638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtggagctgagatgcccGtgcccgcagccaccagaccc	12	17	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72732638	T	T	72732638	1	4	227	0	1	0	0	0	0	0	0	0	16651	1160	40	3		3	TRIM50	7	72732638	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	8290340	72732638	86406025	274	172566											
CCDC132	55610	broad.mit.edu	37	chr7	92963514	92963514	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aagccttattgatctagtaaGtaacgaattggaataaattc	7	5	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92963514	C	C	92963514	1	2	227	0	1	0	0	0	0	0	0	0	2793	1044	36	4		4	CCDC132	7	92963514	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	20230876	92963514	66175149	275	172567											
COL1A2	1278	broad.mit.edu	37	chr7	94024394	94024394	+	Frame_Shift_Del	DEL	A	-	-													ttgctgcttgcagtaaccttAtgcctagcaacatgccaatg							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	94024394	-	-	94024394	7	5	227	1	0	1	0	1	0	0	0	0	3710	446	16	0	53	0	COL1A2	7	94024394	Frame_Shift_Del	DEL	A	TCGA-91-6831-01A-11D-1855-08	1060880	94024394	65114269	276	172568											
TRRAP	8295	broad.mit.edu	37	chr7	98490257	98490257	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	actgttttatctttctcccaAattccaagtcacatgagtaa	4	10	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	98490257	G	G	98490257	1	3	227	0	1	0	0	0	0	0	0	0	16726	29	1	5		5	TRRAP	7	98490257	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	4465863	98490257	60648406	277	172569											
TFR2	7036	broad.mit.edu	37	chr7	100230838	100230838	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccccatcctaggagcgggCagggggtgctcaccgtgacg	16	14	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100230838	A	A	100230838	1	1	227	0	1	0	0	0	0	0	0	0	15934	725	25	3		3	TFR2	7	100230838	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	1740581	100230838	58907825	278	172570											
ZAN	7455	broad.mit.edu	37	chr7	100395402	100395402	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaagattaaataaatttAtatatttatttatttgagac	4	2	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	100395402	G	G	100395402	1	3	227	0	1	0	0	0	0	0	0	0	17640	464	16	5		5	ZAN	7	100395402	3'UTR	SNP	A	TCGA-91-6831-01A-11D-1855-08	164564	100395402	58743261	279	172571											
MUC17	140453	broad.mit.edu	37	chr7	100680675	100680675	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actaacaagtatgcctctcaGcaccacgctggtggtcagtt	9	12	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100680675	C	C	100680675	3	2	227	1	0	0	0	0	1	0	0	0	10068	971	34	4	5988	4	MUC17	7	100680675	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	285273	100680675	58457988	280	172572											
MUC17	140453	broad.mit.edu	37	chr7	100685025	100685025	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttcatctcctacaatcgCtgaaggtaccagcttgccaa	7	13	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100685025	T	T	100685025	3	4	227	1	0	0	0	0	1	0	0	0	10068	797	28	4	10338	4	MUC17	7	100685025	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	4350	100685025	58453638	281	172573											
RELN	5649	broad.mit.edu	37	chr7	103202244	103202244	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacaaagaaagaaactgtcAgttttattaacttacacaca	4	7	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103202244	C	C	103202244	1	2	227	0	1	0	0	0	0	0	0	0	13328	203	7	5		5	RELN	7	103202244	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	2517219	103202244	55936419	282	172574											
RELN	5649	broad.mit.edu	37	chr7	103215998	103215998	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtatttagccttaccagTatatcccaggtcacagaaac	6	11	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	103215998	C	C	103215998	3	2	227	1	0	0	0	0	1	0	0	0	13328	1638	57	5	6230	5	RELN	7	103215998	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	13754	103215998	55922665	283	172575											
LAMB1	3912	broad.mit.edu	37	chr7	107591767	107591767	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactggcactgccccgtgaActgcggccagaacacagacc	11	16	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107591767	G	G	107591767	3	3	227	1	0	0	0	0	1	0	0	0	8682	57	2	5	2109	5	LAMB1	7	107591767	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	4375769	107591767	51546896	284	172576											
LAMB4	22798	broad.mit.edu	37	chr7	107703285	107703285	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gactgacatcctctgccaggGaccagattccagtatccatc	8	14	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107703285	T	T	107703285	2	4	227	1	0	0	0	0	0	0	0	1	8685	1161	41	3		3	LAMB4	7	107703285	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	111518	107703285	51435378	285	172577											
TFEC	22797	broad.mit.edu	37	chr7	115624558	115624558	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcagaactttccaggtGtgctgggacctacaagatca	10	11	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115624558	A	A	115624558	1	1	227	0	1	0	0	0	0	0	0	0	15925	1392	48	4		4	TFEC	7	115624558	5'UTR	SNP	G	TCGA-91-6831-01A-11D-1855-08	7921273	115624558	43514105	286	172578											
C7orf58	79974	broad.mit.edu	37	chr7	120655845	120655845	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactcaacatggctatacgGttgtcatcgctgaagaaagg	11	8	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120655845	A	A	120655845	3	1	227	1	0	0	0	0	1	0	0	0	2430	1261	44	4	382	4	C7orf58	7	120655845	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	5031287	120655845	38482818	287	172579											
PTPRZ1	5803	broad.mit.edu	37	chr7	121694245	121694245	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctgctgttgggcttgGtttcattatacaatctccta	7	10	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121694245	A	A	121694245	1	1	227	0	1	0	0	0	0	0	0	0	12922	1276	44	4		4	PTPRZ1	7	121694245	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1038400	121694245	37444418	288	172580											
IMPDH1	3614	broad.mit.edu	37	chr7	128032958	128032958	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaaggagctggagaacCcgtagtgcaaatctgtggac	14	8	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128032958	A	A	128032958	1	1	227	0	1	0	0	0	0	0	0	0	7796	638	22	2		2	IMPDH1	7	128032958	3'UTR	SNP	C	TCGA-91-6831-01A-11D-1855-08	6338713	128032958	31105705	289	172581											
CPA1	1357	broad.mit.edu	37	chr7	130020359	130020359	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaccttccctcccggcagcAgcatgcgggggttgctggtg	15	13	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130020359	G	G	130020359	1	3	227	0	1	0	0	0	0	0	0	0	3821	203	7	5		5	CPA1	7	130020359	5'UTR	SNP	A	TCGA-91-6831-01A-11D-1855-08	1987401	130020359	29118304	290	172582											
PLXNA4	91584	broad.mit.edu	37	chr7	131859587	131859587	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aattcctgggaacagcacccGcatggtgtaagttctatagt	10	9	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131859587	A	A	131859587	3	1	227	1	0	0	0	0	1	0	0	0	12217	1086	38	4	1765	4	PLXNA4	7	131859587	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1839228	131859587	27279076	291	172583											
CHRM2	1129	broad.mit.edu	37	chr7	136699767	136699768	+	Frame_Shift_Ins	INS	-	C	C													gtttccattaaagtcaaccgINSccacctccagaccgtcaaca							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	136699768	C	C	136699767	7	5	227	1	0	1	1	0	0	0	0	0	3408	1087	38	0	157	0	CHRM2	7	136699767	Frame_Shift_Ins	INS	-	TCGA-91-6831-01A-11D-1855-08	4840180	136699767	22438896	292	172584											
KEL	3792	broad.mit.edu	37	chr7	142641351	142641351	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaacaaagacttaggaggGtcagagaagtgacgagaagt	13	6	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142641351	T	T	142641351	1	4	227	0	1	0	0	0	0	0	0	0	8212	1276	44	3		3	KEL	7	142641351	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	5941584	142641351	16497312	293	172585											
DPP6	1804	broad.mit.edu	37	chr7	154172210	154172210	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctagtaatttgcctctcGgatttccccctttggccaca	8	13	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154172210	T	T	154172210	1	4	227	0	1	0	0	0	0	0	0	0	4770	1131	39	1		1	DPP6	7	154172210	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	11530859	154172210	4966453	294	172586											
PTPRN2	5799	broad.mit.edu	37	chr7	158334236	158334236	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgtggctcacacagaaCatcttcatagtaggaaagct	10	8	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158334236	A	A	158334236	1	1	227	0	1	0	0	0	0	0	0	0	12916	493	17	3		3	PTPRN2	7	158334236	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	4162026	158334236	804427	295	172587											
CSMD1	64478	broad.mit.edu	37	chr8	2949101	2949101	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agtggaccagcggagatataActgattactcctgcttgtaa	10	8	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2949101	T	T	2949101	3	4	227	1	0	0	0	0	1	0	0	0	3978	40	2	5	3564	5	CSMD1	8	2949101	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08		2949101	143414921	296	172588											
CSMD1	64478	broad.mit.edu	37	chr8	3087470	3087470	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaactcttgagaaataTttctgaagaaataatacatt	5	4	2	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	3087470	C	C	3087470	1	2	227	0	1	0	0	0	0	0	0	0	3978	1508	52	5		5	CSMD1	8	3087470	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	138369	3087470	143276552	297	172589											
CSMD1	64478	broad.mit.edu	37	chr8	3474272	3474272	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaccattttctggaatccCaggatctggacacatgtcag	8	11	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3474272	A	A	3474272	3	1	227	1	0	0	0	0	1	0	0	0	3978	594	21	2	9702	2	CSMD1	8	3474272	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	386802	3474272	142889750	298	172590											
SGK223	157285	broad.mit.edu	37	chr8	8235375	8235376	+	Frame_Shift_Del	DEL	AG	-	-													cacagccttctcctccgggaAgctcaccgggtggaaggcaa							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	8235376	-	-	8235375	7	5	227	1	0	1	0	1	0	0	0	0	14323	72	3	0	3680	0	SGK223	8	8235375	Frame_Shift_Del	DEL	AG	TCGA-91-6831-01A-11D-1855-08	4761103	8235375	138128647	299	172591											
SOX7	83595	broad.mit.edu	37	chr8	10583302	10583302	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gtggcatcagccaggacggaGatgaggctggtctctgtggg	18	8	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10583302	C	C	10583302	3	2	227	1	0	0	0	0	1	0	0	0	15070	932	33	4	57	4	SOX7	8	10583302	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2347927	10583302	135780720	300	172592											
EFHA2	286097	broad.mit.edu	37	chr8	16921848	16921848	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagaagaactgagtaatGtggtatttcacatgatattg	9	3	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16921848	T	T	16921848	1	4	227	0	1	0	0	0	0	0	0	0	4984	1392	48	3		3	EFHA2	8	16921848	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	6338546	16921848	129442174	301	172593											
SLC39A14	23516	broad.mit.edu	37	chr8	22273581	22273581	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gccctgggggtgtgctttctCctaggacctgcaggcttccc	13	14	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22273581	T	T	22273581	1	4	227	0	1	0	0	0	0	0	0	0	14731	870	30	4		4	SLC39A14	8	22273581	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	5351733	22273581	124090441	302	172594											
ZNF395	55893	broad.mit.edu	37	chr8	28206337	28206337	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcacttcttagcctcccCtcgggctttcctgcagaaag	10	15	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28206337	A	A	28206337	3	1	227	1	0	0	0	0	1	0	0	0	18008	681	24	2	104	2	ZNF395	8	28206337	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	5932756	28206337	118157685	303	172595											
DUSP26	78986	broad.mit.edu	37	chr8	33449609	33449609	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccggttggggatgatgccTcggtggtctttgactttctt	13	10	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33449609	C	C	33449609	2	2	227	1	0	0	0	0	0	0	0	1	4863	1538	54	5		5	DUSP26	8	33449609	Silent	SNP	T	TCGA-91-6831-01A-11D-1855-08	5243272	33449609	112914413	304	172596											
ERLIN2	11160	broad.mit.edu	37	chr8	37608052	37608052	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggcagaaaggctgggGgtggtgggaagatgcaagga	19	5	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37608052	T	T	37608052	1	4	227	0	1	0	0	0	0	0	0	0	5275	1247	43	2		2	ERLIN2	8	37608052	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	4158443	37608052	108755970	305	172597											
EIF4EBP1	1978	broad.mit.edu	37	chr8	37917294	37917294	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaacaaaaaaaCaaaaaaaaacttattttctt	0	4	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37917294	A	A	37917294	1	1	227	0	1	0	0	0	0	0	0	0	5074	493	17	3		3	EIF4EBP1	8	37917294	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	309242	37917294	108446728	306	172598											
WHSC1L1	54904	broad.mit.edu	37	chr8	38189081	38189081	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggctggttgctaaaaaaCtggacatgatattctcgggc	11	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38189081	T	T	38189081	2	4	227	1	0	0	0	0	0	0	0	1	17490	564	20	4		4	WHSC1L1	8	38189081	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	271787	38189081	108174941	307	172599											
ZMAT4	79698	broad.mit.edu	37	chr8	40554959	40554959	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccacgtgtgagagaaacCcattccattcttttacaaat	7	10	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40554959	A	A	40554959	1	1	227	0	1	0	0	0	0	0	0	0	17820	638	22	2		2	ZMAT4	8	40554959	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2365878	40554959	105809063	308	172600											
ANK1	286	broad.mit.edu	37	chr8	41545812	41545812	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acagttgacaggcctgaggaCacggcctgtgatggatgtgg	16	8	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41545812	G	G	41545812	1	3	227	0	1	0	0	0	0	0	0	0	620	493	17	4		4	ANK1	8	41545812	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	990853	41545812	104818210	309	172601											
SNTG1	54212	broad.mit.edu	37	chr8	51465646	51465646	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcattgctgtggatggggtCtgcactgggattattcagtg	15	6	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51465646	A	A	51465646	2	1	227	1	0	0	0	0	0	0	0	1	14988	900	32	3		3	SNTG1	8	51465646	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	9919834	51465646	94898376	310	172602											
SOX17	64321	broad.mit.edu	37	chr8	55371036	55371036	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcagacccaggcggccgGgcgcgctggcgcgaatcgct	17	15	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55371036	T	T	55371036	1	4	227	0	1	0	0	0	0	0	0	0	15061	1247	43	2		2	SOX17	8	55371036	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3905390	55371036	90992986	311	172603											
RAB2A	5862	broad.mit.edu	37	chr8	61471410	61471410	+	Splice_Site	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatttttttttaactttcaGgtgttggtaaatcatgctta	6	4	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61471410	C	C	61471410	5	2	227	1	0	0	0	0	0	0	1	0	13025	1014	35	4	52	4	RAB2A	8	61471410	Splice_Site	SNP	G	TCGA-91-6831-01A-11D-1855-08	6100374	61471410	84892612	312	172604											
SGK3	23678	broad.mit.edu	37	chr8	67763160	67763160	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atttaatcctaatgtggtaaGtatatatccaaatctttctt	4	6	2	0	rs55633875		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67763160	T	T	67763160	1	4	227	0	1	0	0	0	0	0	0	0	14325	1044	36	3		3	SGK3	8	67763160	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	6291750	67763160	78600862	313	172605											
ARFGEF1	10565	broad.mit.edu	37	chr8	68208794	68208794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttctcacagcttgcagtaCagtcccttcatgaatttcta	6	11	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68208794	A	A	68208794	3	1	227	1	0	0	0	0	1	0	0	0	854	478	17	3	5178	3	ARFGEF1	8	68208794	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	445634	68208794	78155228	314	172606											
SLCO5A1	81796	broad.mit.edu	37	chr8	70706557	70706557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcaaaagtagatgtcacaGggcagccaggactgagtaga	13	7	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70706557	T	T	70706557	1	4	227	0	1	0	0	0	0	0	0	0	14845	1015	35	2		2	SLCO5A1	8	70706557	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2497763	70706557	75657465	315	172607											
TCEB1	6921	broad.mit.edu	37	chr8	74868111	74868111	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catccatcaaacattaaaagTgaatatatgaagaaaaagac	5	6	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74868111	C	C	74868111	1	2	227	0	1	0	0	0	0	0	0	0	15801	1711	59	5		5	TCEB1	8	74868111	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	4161554	74868111	71495911	316	172608											
CRISPLD1	83690	broad.mit.edu	37	chr8	75926293	75926293	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacatgaacatctgggggcaGatatggcccaaagctgtcta	11	9	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75926293	T	T	75926293	3	4	227	1	0	0	0	0	1	0	0	0	3914	933	33	3	596	3	CRISPLD1	8	75926293	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1058182	75926293	70437729	317	172609											
PEX2	5828	broad.mit.edu	37	chr8	77895569	77895569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtacttctgtgccacaCttaggacaagtaaagtacac	8	10	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77895569	A	A	77895569	3	1	227	1	0	0	0	0	1	0	0	0	11840	564	20	3	75	3	PEX2	8	77895569	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1969276	77895569	68468453	318	172610											
SNX16	64089	broad.mit.edu	37	chr8	82713903	82713903	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatttcattttcactattaCctttaaaaatcttctacctt	0	9	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82713903	T	T	82713903	1	4	227	0	1	0	0	0	0	0	0	0	15001	522	18	4		4	SNX16	8	82713903	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	4818334	82713903	63650119	319	172611											
CA1	759	broad.mit.edu	37	chr8	86250418	86250418	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcatatttctcgagcaCtattttttaaattttcccag	6	8	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86250418	T	T	86250418	1	4	227	0	1	0	0	0	0	0	0	0	2536	580	20	4		4	CA1	8	86250418	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	3536515	86250418	60113604	320	172612											
PSKH2	85481	broad.mit.edu	37	chr8	87060894	87060894	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagccatggtgatcacccAgggatggtccagggcctggc	15	12	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87060894	C	C	87060894	3	2	227	1	0	0	0	0	1	0	0	0	12771	188	7	5	204	5	PSKH2	8	87060894	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	810476	87060894	59303128	321	172613											
CNGB3	54714	broad.mit.edu	37	chr8	87666323	87666323	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtattttcattaattttagCcaatttcatcaattattttt	2	5	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	87666323	T	T	87666323	1	4	227	0	1	0	0	0	0	0	0	0	3633	754	26	4		4	CNGB3	8	87666323	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	605429	87666323	58697699	322	172614											
CNBD1	168975	broad.mit.edu	37	chr8	87899795	87899795	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagtctaagcacattaaTtatggccagttgaatgcatt	7	6	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	87899795	G	G	87899795	3	3	227	1	0	0	0	0	1	0	0	0	3623	1490	52	5	120	5	CNBD1	8	87899795	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	233472	87899795	58464227	323	172615											
GEM	2669	broad.mit.edu	37	chr8	95262661	95262661	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcatgctctccttccttttCtggtaggccagccgccgttc	10	15	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95262661	A	A	95262661	3	1	227	1	0	0	0	0	1	0	0	0	6393	912	32	3	126	3	GEM	8	95262661	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	7362866	95262661	51101361	324	172616											
PKHD1L1	93035	broad.mit.edu	37	chr8	110460608	110460608	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcttaatattcaaaatattAatccaagccaaggtagtcat	5	8	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110460608	T	T	110460608	3	4	227	1	0	0	0	0	1	0	0	0	12067	362	13	5	6167	5	PKHD1L1	8	110460608	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	15197947	110460608	35903414	325	172617											
CSMD3	114788	broad.mit.edu	37	chr8	113256788	113256788	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagcaggagtttctggctGtttacagctgtgggctatat	13	6	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113256788	T	T	113256788	3	4	227	1	0	0	0	0	1	0	0	0	3980	1386	48	3	914	3	CSMD3	8	113256788	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2796180	113256788	33107234	326	172618											
CSMD3	114788	broad.mit.edu	37	chr8	113323386	113323386	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggggattctggtgtactaCagtagaaagcttttcaaaag	12	5	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113323386	T	T	113323386	3	4	227	1	0	0	0	0	1	0	0	0	3980	478	17	4	3505	4	CSMD3	8	113323386	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	66598	113323386	33040636	327	172619											
CSMD3	114788	broad.mit.edu	37	chr8	113363403	113363403	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttatagtcttttaacttaCctaaacaaattgggattgga	6	6	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113363403	T	T	113363403	5	4	227	1	0	0	0	0	0	0	1	0	3980	521	18	4	4925	4	CSMD3	8	113363403	Splice_Site	SNP	C	TCGA-91-6831-01A-11D-1855-08	40017	113363403	33000619	328	172620											
KLHL38	340359	broad.mit.edu	37	chr8	124658213	124658213	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccggtctttcatgtccgcAcatttgacaaatttgttgga	8	10	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124658213	T	T	124658213	4	4	227	1	0	0	0	0	0	1	0	0	8461	157	6	5	237	5	KLHL38	8	124658213	Nonsense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	11294810	124658213	21705809	329	172621											
OC90	729330	broad.mit.edu	37	chr8	133051267	133051267	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgagccaggcagaaggaGgtgtccagaaggttcaggga	17	7	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133051267	T	T	133051267	2	4	227	1	0	0	0	0	0	0	0	1	10909	987	35	2		2	OC90	8	133051267	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	8393054	133051267	13312755	330	172622											
LRRC6	23639	broad.mit.edu	37	chr8	133637538	133637538	+	Silent	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	cttaatttttcctgtttcttCcgttgtttttccatgtgtct	5	9	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133637538	T	T	133637538	2	4	227	1	0	0	0	0	0	0	0	1	9103	842	30	4		4	LRRC6	8	133637538	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	586271	133637538	12726484	331	172623											
TG	7038	broad.mit.edu	37	chr8	133948035	133948035	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaactcaaaggccaccaGctttggaagtcttcgctgcc	12	12	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133948035	A	A	133948035	3	1	227	1	0	0	0	0	1	0	0	0	15936	971	34	4	5065	4	TG	8	133948035	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	310497	133948035	12415987	332	172624											
COL22A1	169044	broad.mit.edu	37	chr8	139696777	139696777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacactgacccatccaccacGtgccaggctgactgcatcct	7	17	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139696777	T	T	139696777	1	4	227	0	1	0	0	0	0	0	0	0	3713	1160	40	3		3	COL22A1	8	139696777	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	5748742	139696777	6667245	333	172625											
CYP11B1	1584	broad.mit.edu	37	chr8	143958272	143958272	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggccaaccaggcccaGccgctctccaaaaagagcca	10	16	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143958272	T	T	143958272	3	4	227	1	0	0	0	0	1	0	0	0	4178	962	34	3	910	3	CYP11B1	8	143958272	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	4261495	143958272	2405750	334	172626											
PLEC	5339	broad.mit.edu	37	chr8	145001521	145001545	+	Intron	DEL	CAGAGCCGTGGCCGCAGGGCACGCC	-	-													ggcctgggtgatggtgtggtCagagccgtggccgcagggca							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	145001545	-	-	145001521	6	5	227	0	1	1	0	1	0	0	0	0	12147	841	29	0		0	PLEC	8	145001521	Intron	DEL	CAGAGCCGTGGCCGCAGGGCACGCC	TCGA-91-6831-01A-11D-1855-08	1043249	145001521	1362501	335	172627											
SLC39A4	55630	broad.mit.edu	37	chr8	145642092	145642092	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaggtgagcaggctcagcaGaccagcaggcggggacgccg	18	11	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145642092	T	T	145642092	3	4	227	1	0	0	0	0	1	0	0	0	14734	933	33	3	2026	3	SLC39A4	8	145642092	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	640571	145642092	721930	336	172628											
VPS28	51160	broad.mit.edu	37	chr8	145651592	145651592	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccggcttgttcccaggggCtgcaagagaaggcagagagc	15	11	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145651592	A	A	145651592	5	1	227	1	0	0	0	0	0	0	1	0	17326	811	28	3	774	3	VPS28	8	145651592	Splice_Site	SNP	C	TCGA-91-6831-01A-11D-1855-08	9500	145651592	712430	337	172629											
SMARCA2	6595	broad.mit.edu	37	chr9	2161967	2161967	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gccgagtggcgctccctgagGagcaggagttgttaagttgt	16	8	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2161967	T	T	2161967	1	4	227	0	1	0	0	0	0	0	0	0	14883	1189	41	3		3	SMARCA2	9	2161967	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08		2161967	139051464	338	172630											
PTPRD	5789	broad.mit.edu	37	chr9	8748054	8748054	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgctagcccatgctccgaTgttaacgacattgaaggcac	9	13	0	1	rs115637820	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8748054	A	A	8748054	1	1	227	0	1	0	0	0	0	0	0	0	12907	1479	51	5		5	PTPRD	9	8748054	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	6586087	8748054	132465377	339	172631											
FREM1	158326	broad.mit.edu	37	chr9	14851267	14851267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaactaggctggaagctttGtctctccttcttacctcatc	6	13	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14851267	T	T	14851267	1	4	227	0	1	0	0	0	0	0	0	0	6104	1392	48	3		3	FREM1	9	14851267	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	6103213	14851267	126362164	340	172632											
ADAMTSL1	92949	broad.mit.edu	37	chr9	18474374	18474375	+	Intron	DEL	TG	-	-													tgtgtgtgtgtatgtgtgttTgtgtgtgtgtgtgtgtcttt							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	18474375	-	-	18474374	6	5	227	0	1	1	0	1	0	0	0	0	274	1827	63	0		0	ADAMTSL1	9	18474374	Intron	DEL	TG	TCGA-91-6831-01A-11D-1855-08	3623107	18474374	122739057	341	172633											
IFNA4	3441	broad.mit.edu	37	chr9	21187301	21187301	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatctcatggaggacagagAtggcttgagccttctggaac	12	9	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21187301	T	T	21187301	3	4	227	1	0	0	0	0	1	0	0	0	7609	333	12	5	343	5	IFNA4	9	21187301	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	2712927	21187301	120026130	342	172634											
AQP7	364	broad.mit.edu	37	chr9	33386945	33386945	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctggtcttgcccggtccGgcagggcctgggctcactca	13	16	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33386945	A	A	33386945	1	1	227	0	1	0	0	0	0	0	0	0	833	1131	39	4		4	AQP7	9	33386945	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	12199644	33386945	107826486	343	172635											
GBA2	57704	broad.mit.edu	37	chr9	35738882	35738882	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattaaatatgcattgacgCggagccatggttcatcatct	10	8	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35738882	T	T	35738882	3	4	227	1	0	0	0	0	1	0	0	0	6329	768	27	4	993	4	GBA2	9	35738882	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2351937	35738882	105474549	344	172636											
PRUNE2	158471	broad.mit.edu	37	chr9	79325382	79325382	+	Frame_Shift_Del	DEL	T	-	-													gtgggatcctctttccagtaTtttttagcctttctggggaa							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79325382	-	-	79325382	7	5	227	1	0	1	0	1	0	0	0	0	12747	1493	52	0	7506	0	PRUNE2	9	79325382	Frame_Shift_Del	DEL	T	TCGA-91-6831-01A-11D-1855-08	43586500	79325382	61888049	345	172637											
FRMD3	257019	broad.mit.edu	37	chr9	85958123	85958123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttgaacaatacaggcacCcaggtaggcagcatcagaaa	9	11	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85958123	A	A	85958123	3	1	227	1	0	0	0	0	1	0	0	0	6110	623	22	2	1379	2	FRMD3	9	85958123	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	6632741	85958123	55255308	346	172638											
HEMGN	55363	broad.mit.edu	37	chr9	100693073	100693073	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattacttggcatgtgttagGagagttgtcttcaggttcct	11	6	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100693073	T	T	100693073	3	4	227	1	0	0	0	0	1	0	0	0	7117	1174	41	3	858	3	HEMGN	9	100693073	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	14734950	100693073	40520358	347	172639											
ALDOB	229	broad.mit.edu	37	chr9	104190767	104190770	+	Frame_Shift_Del	DEL	TTTG	-	-													ttaccttgaatggtggtttcTttgtttgttcctgcaagagg							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	104190770	-	-	104190767	7	5	227	1	0	1	0	1	0	0	0	0	508	1606	56	0	755	0	ALDOB	9	104190767	Frame_Shift_Del	DEL	TTTG	TCGA-91-6831-01A-11D-1855-08	3497694	104190767	37022664	348	172640											
RNF20	56254	broad.mit.edu	37	chr9	104302699	104302699	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttatttgaccaatttagTtctccttactgttctcttca	3	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	104302699	C	C	104302699	1	2	227	0	1	0	0	0	0	0	0	0	13584	1740	60	5		5	RNF20	9	104302699	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	111932	104302699	36910732	349	172641											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112899608	112899608	+	Nonsense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctctggggtcagtcaactCagacaagccactgactaatc	9	13	4	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	112899608	G	G	112899608	4	3	227	1	0	0	0	0	0	1	0	0	11504	838	29	4	1814	4	PALM2-AKAP2	9	112899608	Nonsense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	8596909	112899608	28313823	350	172642											
PALM2-AKAP2	445815	broad.mit.edu	37	chr9	112900057	112900057	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagacaaccaatgccctcCaggaaaattcactggctgat	8	11	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112900057	T	T	112900057	4	4	227	1	0	0	0	0	0	1	0	0	11504	595	21	4	2263	4	PALM2-AKAP2	9	112900057	Nonsense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	449	112900057	28313374	351	172643											
ZNF883	169834	broad.mit.edu	37	chr9	115759405	115759405	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gctttcccacactcattactCtgctaaggtttcctttctga	5	13	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	115759405	G	G	115759405	3	3	227	1	0	0	0	0	1	0	0	0	18327	922	32	4	6	4	ZNF883	9	115759405	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2859348	115759405	25454026	352	172644											
SETX	23064	broad.mit.edu	37	chr9	135171427	135171427	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctggttctacaatttgcCacatatacataccaaacaaa	3	12	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135171427	A	A	135171427	1	1	227	0	1	0	0	0	0	0	0	0	14254	609	21	2		2	SETX	9	135171427	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	19412022	135171427	6042004	353	172645											
COL5A1	1289	broad.mit.edu	37	chr9	137619311	137619311	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatggttggtgaagagacAcataagccatgggaccctta	14	7	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	137619311	C	C	137619311	1	2	227	0	1	0	0	0	0	0	0	0	3728	174	6	5		5	COL5A1	9	137619311	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	2447884	137619311	3594120	354	172646											
LCN1	3933	broad.mit.edu	37	chr9	138415157	138415157	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatacacggccggtgagtccCggggcctgagccagagcctg	15	13	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	138415157	G	G	138415157	1	3	227	0	1	0	0	0	0	0	0	0	8752	667	23	4		4	LCN1	9	138415157	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	795846	138415157	2798274	355	172647											
GPSM1	26086	broad.mit.edu	37	chr9	139252515	139252515	+	Frame_Shift_Del	DEL	G	-	-													gccacctgacgtactgccccGgggccctaccatgccggacg							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	139252515	-	-	139252515	7	5	227	1	0	1	0	1	0	0	0	0	6800	1116	39	0	2092	0	GPSM1	9	139252515	Frame_Shift_Del	DEL	G	TCGA-91-6831-01A-11D-1855-08	837358	139252515	1960916	356	172648											
TUBB8	347688	broad.mit.edu	37	chr10	94528	94528	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccctggctaaggagccGcaccccagtcctcgcccgca	11	19	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94528	A	A	94528	1	1	227	0	1	0	0	0	0	0	0	0	16887	1102	38	4		4	TUBB8	10	94528	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08		94528	135440219	357	172649											
ITGA8	8516	broad.mit.edu	37	chr10	15649708	15649708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaaatcctggcactggtGggatttctgcctttttatca	10	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15649708	T	T	15649708	3	4	227	1	0	0	0	0	1	0	0	0	7952	1348	47	2	1515	2	ITGA8	10	15649708	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	15555180	15649708	119885039	358	172650											
MLLT10	8028	broad.mit.edu	37	chr10	21884350	21884350	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattgttttacagtctgttcCgcatgatcgttataataagg	8	6	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21884350	T	T	21884350	3	4	227	1	0	0	0	0	1	0	0	0	9719	652	23	4	400	4	MLLT10	10	21884350	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	6234642	21884350	113650397	359	172651											
SPAG6	9576	broad.mit.edu	37	chr10	22657341	22657341	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatttatagtaatgttatTtttatgtagttttggtctat	6	1	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22657341	C	C	22657341	1	2	227	0	1	0	0	0	0	0	0	0	15098	1856	64	5		5	SPAG6	10	22657341	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	772991	22657341	112877406	360	172652											
ARMC3	219681	broad.mit.edu	37	chr10	23321787	23321787	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatctcaatgtaattgacaCaggtatgtagcagaaaaaat	8	5	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23321787	A	A	23321787	1	1	227	0	1	0	0	0	0	0	0	0	956	493	17	3		3	ARMC3	10	23321787	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	664446	23321787	112212960	361	172653											
GAD2	2572	broad.mit.edu	37	chr10	26534807	26534807	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gccagtggaatggatcttgtCtgtatatggaactaattgca	11	6	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26534807	A	A	26534807	1	1	227	0	1	0	0	0	0	0	0	0	6240	928	32	3		3	GAD2	10	26534807	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	3213020	26534807	108999940	362	172654											
SVIL	6840	broad.mit.edu	37	chr10	29811266	29811266	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatctctttgcccatcaccGagattgttttctaaaagcaa	5	11	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29811266	A	A	29811266	1	1	227	0	1	0	0	0	0	0	0	0	15539	1073	37	4		4	SVIL	10	29811266	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3276459	29811266	105723481	363	172655											
C10orf68	79741	broad.mit.edu	37	chr10	33141020	33141020	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaacatttgttcattcttAgcaatgagtagttgtccctg	7	9	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33141020	G	G	33141020	1	3	227	0	1	0	0	0	0	0	0	0	1624	435	15	5		5	C10orf68	10	33141020	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	3329754	33141020	102393727	364	172656											
A1CF	29974	broad.mit.edu	37	chr10	52566651	52566651	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcatatcctggaggaagAggcagagaaaacttgatgaa	12	6	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52566651	G	G	52566651	1	3	227	0	1	0	0	0	0	0	0	0	2	319	11	5		5	A1CF	10	52566651	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	19425631	52566651	82968096	365	172657											
CISD1	55847	broad.mit.edu	37	chr10	60036866	60036866	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gataattatttgttttccttCcctgctctagttgaatggat	7	7	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60036866	A	A	60036866	1	1	227	0	1	0	0	0	0	0	0	0	3466	870	30	3		3	CISD1	10	60036866	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	7470215	60036866	75497881	366	172658											
CTNNA3	29119	broad.mit.edu	37	chr10	67679945	67679945	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaatatatattgcttttGttgatttagcgcccaatatt	5	8	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67679945	T	T	67679945	1	4	227	0	1	0	0	0	0	0	0	0	4048	1392	48	3		3	CTNNA3	10	67679945	3'UTR	SNP	G	TCGA-91-6831-01A-11D-1855-08	7643079	67679945	67854802	367	172659											
LRRTM3	347731	broad.mit.edu	37	chr10	68688212	68688212	+	Splice_Site	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctccagggagtgtgaggTatgaaccattgtgataaaaa	14	5	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	68688212	C	C	68688212	5	2	227	1	0	0	0	0	0	0	1	0	9128	1652	57	5	1544	5	LRRTM3	10	68688212	Splice_Site	SNP	T	TCGA-91-6831-01A-11D-1855-08	1008267	68688212	66846535	368	172660											
TET1	80312	broad.mit.edu	37	chr10	70451167	70451167	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagtgagcacatctttttgGatgcaaatattggtggggtg	13	5	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70451167	T	T	70451167	3	4	227	1	0	0	0	0	1	0	0	0	15891	1174	41	3	6049	3	TET1	10	70451167	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1762955	70451167	65083580	369	172661											
KIAA1274	27143	broad.mit.edu	37	chr10	72300887	72300887	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgctggaggccctgcgGgccgccctctccaaggaccc	13	18	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72300887	T	T	72300887	2	4	227	1	0	0	0	0	0	0	0	1	8290	1219	43	2		2	KIAA1274	10	72300887	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	1849720	72300887	63233860	370	172662											
P4HA1	5033	broad.mit.edu	37	chr10	74803520	74803520	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	catgaaaactccagcacagaTattatcaaacatctatgcct	4	11	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74803520	C	C	74803520	1	2	227	0	1	0	0	0	0	0	0	0	11450	1421	49	5		5	P4HA1	10	74803520	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	2502633	74803520	60731227	371	172663											
USP54	159195	broad.mit.edu	37	chr10	75264938	75264938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaagcccaatcatagaCcttattttcttctgatagcc	5	10	3	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75264938	A	A	75264938	1	1	227	0	1	0	0	0	0	0	0	0	17212	522	18	3		3	USP54	10	75264938	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	461418	75264938	60269809	372	172664											
CDHR1	92211	broad.mit.edu	37	chr10	85972792	85972792	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacgtgctgatttagccagAgtacacaaggattgtcccca	10	10	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85972792	G	G	85972792	1	3	227	0	1	0	0	0	0	0	0	0	3148	319	11	5		5	CDHR1	10	85972792	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	10707854	85972792	49561955	373	172665											
MYOF	26509	broad.mit.edu	37	chr10	95082799	95082799	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagagagtctgtttccCtgagcttggcaaagtctctc	12	9	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95082799	T	T	95082799	1	4	227	0	1	0	0	0	0	0	0	0	10183	696	24	4		4	MYOF	10	95082799	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	9110007	95082799	40451948	374	172666											
ABCC2	1244	broad.mit.edu	37	chr10	101594494	101594494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagcatcaatgggtgcacCatttatggcaaatgtcaccc	10	10	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101594494	A	A	101594494	1	1	227	0	1	0	0	0	0	0	0	0	53	609	21	2		2	ABCC2	10	101594494	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	6511695	101594494	33940253	375	172667											
C10orf82	143379	broad.mit.edu	37	chr10	118424166	118424166	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctaagacaaatcacacaCaaatagtcctagtgctggga	7	10	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	118424166	T	T	118424166	1	4	227	0	1	0	0	0	0	0	0	0	1631	493	17	4		4	C10orf82	10	118424166	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	16829672	118424166	17110581	376	172668											
RGS10	6001	broad.mit.edu	37	chr10	121286719	121286719	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggcatagagagtgctaCgctgacagacaatgttgaac	12	8	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121286719	A	A	121286719	1	1	227	0	1	0	0	0	0	0	0	0	13402	551	19	3		3	RGS10	10	121286719	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2862553	121286719	14248028	377	172669											
CPXM2	119587	broad.mit.edu	37	chr10	125530699	125530699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaccccagctgctatcgcCtctgcccagaacactctcct	5	20	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125530699	A	A	125530699	1	1	227	0	1	0	0	0	0	0	0	0	3870	696	24	2		2	CPXM2	10	125530699	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	4243980	125530699	10004048	378	172670											
TOLLIP	54472	broad.mit.edu	37	chr11	1316878	1316878	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccccaaggcccacctgTaccaccgtgatgttcagtcg	11	15	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	1316878	C	C	1316878	2	2	227	1	0	0	0	0	0	0	0	1	16473	1625	57	5		5	TOLLIP	11	1316878	Silent	SNP	T	TCGA-91-6831-01A-11D-1855-08		1316878	133689638	379	172671											
TNNT3	7140	broad.mit.edu	37	chr11	1950514	1950514	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccctggcacgggggcctcgGagggccaggccttgctgctc	16	16	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1950514	T	T	1950514	1	4	227	0	1	0	0	0	0	0	0	0	16455	1189	41	3		3	TNNT3	11	1950514	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	633636	1950514	133056002	380	172672											
OR51I2	390064	broad.mit.edu	37	chr11	5475230	5475230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggctgcctatctgcagatCcaatgttctttctcactcct	7	13	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5475230	A	A	5475230	3	1	227	1	0	0	0	0	1	0	0	0	11195	855	30	3	514	3	OR51I2	11	5475230	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3524716	5475230	129531286	381	172673											
APBB1	322	broad.mit.edu	37	chr11	6432691	6432691	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgcctcctcatctcccTgcactaagcaggctagcacc	7	18	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6432691	A	A	6432691	1	1	227	0	1	0	0	0	0	0	0	0	761	1595	55	5		5	APBB1	11	6432691	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	957461	6432691	128573825	382	172674											
DCHS1	8642	broad.mit.edu	37	chr11	6661991	6661991	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtcacagccccattgacaCcagcatcggcatcagatgcg	9	14	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6661991	A	A	6661991	3	1	227	1	0	0	0	0	1	0	0	0	4320	507	18	3	9122	3	DCHS1	11	6661991	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	229300	6661991	128344525	383	172675											
NLRP14	338323	broad.mit.edu	37	chr11	7065219	7065219	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaactaacacttggtaAgtgtgttagggccattccct	8	12	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7065219	T	T	7065219	1	4	227	0	1	0	0	0	0	0	0	0	10571	87	3	5		5	NLRP14	11	7065219	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	403228	7065219	127941297	384	172676											
OR5P2	120065	broad.mit.edu	37	chr11	7818148	7818148	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacaaagcggtcataggcCatggcagccagaaggacgca	13	12	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7818148	A	A	7818148	3	1	227	1	0	0	0	0	1	0	0	0	11272	594	21	2	630	2	OR5P2	11	7818148	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	752929	7818148	127188368	385	172677											
DENND5A	23258	broad.mit.edu	37	chr11	9171825	9171825	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcactgccaataacttaccTgtaaagccaaaggagacctg	7	12	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9171825	A	A	9171825	1	1	227	0	1	0	0	0	0	0	0	0	4476	1595	55	5		5	DENND5A	11	9171825	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1353677	9171825	125834691	386	172678											
MRGPRX2	117194	broad.mit.edu	37	chr11	19077996	19077996	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tggaaacaaaaacaagacttGagcacctgctgcatgttcac	8	10	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19077996	C	C	19077996	1	2	227	0	1	0	0	0	0	0	0	0	9861	1305	45	4		4	MRGPRX2	11	19077996	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	9906171	19077996	115928520	387	172679											
ANO3	63982	broad.mit.edu	37	chr11	26678048	26678048	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggttagtcacaagctgagatGaaaattactatagataaatg	9	4	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26678048	T	T	26678048	1	4	227	0	1	0	0	0	0	0	0	0	698	1305	45	3		3	ANO3	11	26678048	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	7600052	26678048	108328468	388	172680											
DCDC1	341019	broad.mit.edu	37	chr11	31327171	31327171	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atcttttttacctttaatttTtttgaatggatttaaaaagg	5	3	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31327171	C	C	31327171	3	2	227	1	0	0	0	0	1	0	0	0	4317	1850	64	5	335	5	DCDC1	11	31327171	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	4649123	31327171	103679345	389	172681											
TTC17	55761	broad.mit.edu	37	chr11	43511885	43511885	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcctccgccaggctctgCactatgcgccacaccagatg	9	17	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43511885	T	T	43511885	3	4	227	1	0	0	0	0	1	0	0	0	16810	710	25	4	3213	4	TTC17	11	43511885	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	12184714	43511885	91494631	390	172682											
HSD17B12	51144	broad.mit.edu	37	chr11	43702283	43702283	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtcggagcagcgcctaTtagtgtcatcctcaccgtca	11	12	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	43702283	C	C	43702283	1	2	227	0	1	0	0	0	0	0	0	0	7448	1508	52	5		5	HSD17B12	11	43702283	5'UTR	SNP	T	TCGA-91-6831-01A-11D-1855-08	190398	43702283	91304233	391	172683											
CHST1	8534	broad.mit.edu	37	chr11	45671388	45671388	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acgatgtcgtaggagaggcgGaagcgccacttctcggccgt	15	11	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45671388	A	A	45671388	2	1	227	1	0	0	0	0	0	0	0	1	3428	1165	41	4		4	CHST1	11	45671388	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	1969105	45671388	89335128	392	172684											
OR4S1	256148	broad.mit.edu	37	chr11	48328205	48328205	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgtggcctgctagcggGggcctcctggttagctggct	17	10	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48328205	A	A	48328205	3	1	227	1	0	0	0	0	1	0	0	0	11176	1232	43	4	433	4	OR4S1	11	48328205	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2656817	48328205	86678311	393	172685											
FOLH1	2346	broad.mit.edu	37	chr11	49170214	49170214	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaaggcctgtctggtaaCcctaatggatcaataaatgc	8	8	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49170214	A	A	49170214	2	1	227	1	0	0	0	0	0	0	0	1	6037	494	18	3		3	FOLH1	11	49170214	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	842009	49170214	85836302	394	172686											
TRIM48	79097	broad.mit.edu	37	chr11	55032470	55032470	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acccggtcaccatagactgtGggcacagcttttgcaggccc	11	14	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55032470	T	T	55032470	3	4	227	1	0	0	0	0	1	0	0	0	16648	1348	47	2	145	2	TRIM48	11	55032470	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	5862256	55032470	79974046	395	172687											
TRIM48	79097	broad.mit.edu	37	chr11	55032845	55032845	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacacatgaaattcctgtgGccctattttcttggagattg	10	8	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55032845	T	T	55032845	1	4	227	0	1	0	0	0	0	0	0	0	16648	1218	42	3		3	TRIM48	11	55032845	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	375	55032845	79973671	396	172688											
OR4C16	219428	broad.mit.edu	37	chr11	55339924	55339924	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tcatcccatgtctttggctgCctggagatcttcatcctcat	7	13	5	1	rs79740520	byFrequency;by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55339924	G	G	55339924	3	3	227	1	0	0	0	0	1	0	0	0	11143	747	26	4	323	4	OR4C16	11	55339924	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	307079	55339924	79666592	397	172689											
OR5T2	219464	broad.mit.edu	37	chr11	55999849	55999849	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagacttttctcctcccTtcagcagaatacatcttcag	6	12	4	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55999849	G	G	55999849	3	3	227	1	0	0	0	0	1	0	0	0	11276	1606	56	5	265	5	OR5T2	11	55999849	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	659925	55999849	79006667	398	172690											
OR8J1	219477	broad.mit.edu	37	chr11	56128574	56128574	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttacacgttggtaattccTatgctgaatcccttgatcta	6	9	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56128574	A	A	56128574	2	1	227	1	0	0	0	0	0	0	0	1	11335	1509	53	5		5	OR8J1	11	56128574	Silent	SNP	T	TCGA-91-6831-01A-11D-1855-08	128725	56128574	78877942	399	172691											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57076490	57076490	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatctttgctcttcacaTtaacatcagaagtccagtcc	4	13	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57076490	A	A	57076490	3	1	227	1	0	0	0	0	1	0	0	0	16443	1493	52	5	1518	5	TNKS1BP1	11	57076490	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	947916	57076490	77930026	400	172692											
ZFP91	80829	broad.mit.edu	37	chr11	58380279	58380279	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgtgagatggaaggatGtggaactgtccttgcccatc	13	9	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58380279	T	T	58380279	3	4	227	1	0	0	0	0	1	0	0	0	17781	1377	48	3	983	3	ZFP91	11	58380279	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1303789	58380279	76626237	401	172693											
NRXN2	9379	broad.mit.edu	37	chr11	64416107	64416107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaggcctgagaaggaaggCcccttggcagagcaaaggct	14	9	0	2	rs34675608		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64416107	A	A	64416107	1	1	227	0	1	0	0	0	0	0	0	0	10761	754	26	3		3	NRXN2	11	64416107	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	6035828	64416107	70590409	402	172694											
GAL3ST3	89792	broad.mit.edu	37	chr11	65810495	65810495	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttggcgtagagcacgtcgTccaggtcccaggccagtagg	15	12	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65810495	G	G	65810495	3	3	227	1	0	0	0	0	1	0	0	0	6261	1667	58	5	520	5	GAL3ST3	11	65810495	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	1394388	65810495	69196021	403	172695											
DLG2	1740	broad.mit.edu	37	chr11	83183723	83183723	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccttcaatgatgtcacCtcttatggcccagaaattag	6	13	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83183723	A	A	83183723	1	1	227	0	1	0	0	0	0	0	0	0	4595	696	24	2		2	DLG2	11	83183723	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	17373228	83183723	51822793	404	172696											
CCDC83	220047	broad.mit.edu	37	chr11	85626333	85626333	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccactgggctttatgctcCtcagggtagaaattatgtct	9	11	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85626333	A	A	85626333	1	1	227	0	1	0	0	0	0	0	0	0	2885	696	24	2		2	CCDC83	11	85626333	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2442610	85626333	49380183	405	172697											
GRM5	2915	broad.mit.edu	37	chr11	88583183	88583183	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caccacccgggccttgggcaAgtgacttgtgagcttcttca	11	13	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88583183	T	T	88583183	3	4	227	1	0	0	0	0	1	0	0	0	6866	69	3	5	2868	5	GRM5	11	88583183	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	2956850	88583183	46423333	406	172698											
MMP13	4322	broad.mit.edu	37	chr11	102825237	102825237	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgccatcgtgaagtctgGtaaaattcagaggagttaca	10	7	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102825237	T	T	102825237	3	4	227	1	0	0	0	0	1	0	0	0	9745	1261	44	3	986	3	MMP13	11	102825237	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	14242054	102825237	32181279	407	172699											
CASP1	834	broad.mit.edu	37	chr11	104934727	104934727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcataataaaaacagagccCtttgtgggatgtctccaaga	8	9	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104934727	A	A	104934727	1	1	227	0	1	0	0	0	0	0	0	0	2694	696	24	2		2	CASP1	11	104934727	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2109490	104934727	30071789	408	172700											
SIK3	23387	broad.mit.edu	37	chr11	116728430	116728430	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagaaattctttttttctTaggaacacagaatactagct	5	8	3	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116728430	A	A	116728430	1	1	227	0	1	0	0	0	0	0	0	0	14432	1769	61	5		5	SIK3	11	116728430	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	11793703	116728430	18278086	409	172701											
PAFAH1B2	5049	broad.mit.edu	37	chr11	117038152	117038152	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagggtttgttacctcgaGgtgagaaacccaatcctttg	10	11	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117038152	T	T	117038152	3	4	227	1	0	0	0	0	1	0	0	0	11479	1000	35	2	445	2	PAFAH1B2	11	117038152	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	309722	117038152	17968364	410	172702											
OR8B2	26595	broad.mit.edu	37	chr11	124253209	124253209	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	taatccagcaagaataaattCagtcactaaggagttgtttc	7	7	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	124253209	G	G	124253209	3	3	227	1	0	0	0	0	1	0	0	0	11321	835	29	4	913	4	OR8B2	11	124253209	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	7215057	124253209	10753307	411	172703											
ROBO4	54538	broad.mit.edu	37	chr11	124763789	124763789	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccctagctcggcgccggcGgtggatacacacggcggtgc	15	15	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124763789	A	A	124763789	3	1	227	1	0	0	0	0	1	0	0	0	13627	1116	39	4	1592	4	ROBO4	11	124763789	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	510580	124763789	10242727	412	172704											
C11orf45	219833	broad.mit.edu	37	chr11	128774402	128774402	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccagctgatggcagcgtgCgtccagggcggagaggtcgt	17	11	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128774402	T	T	128774402	2	4	227	1	0	0	0	0	0	0	0	1	1654	755	27	4		4	C11orf45	11	128774402	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	4010613	128774402	6232114	413	172705											
KCNA1	3736	broad.mit.edu	37	chr12	5020916	5020916	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttttacgagttgggcgaGgaggccatggagaagttccg	16	6	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5020916	A	A	5020916	2	1	227	1	0	0	0	0	0	0	0	1	8071	991	35	4		4	KCNA1	12	5020916	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08		5020916	128830979	414	172706											
ANO2	57101	broad.mit.edu	37	chr12	5939550	5939550	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgccctgccaactaggaaCtcagccctttccccatcctc	5	18	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5939550	A	A	5939550	1	1	227	0	1	0	0	0	0	0	0	0	697	580	20	3		3	ANO2	12	5939550	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	918634	5939550	127912345	415	172707											
PTPN6	5777	broad.mit.edu	37	chr12	7064521	7064521	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagttgctgacttctcgctCttccccaccccagccgtact	7	17	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7064521	A	A	7064521	1	1	227	0	1	0	0	0	0	0	0	0	12900	928	32	3		3	PTPN6	12	7064521	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	1124971	7064521	126787374	416	172708											
CLSTN3	9746	broad.mit.edu	37	chr12	7303151	7303151	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catctccaggggtggagagcAtcactgtgtatgaagagatc	13	8	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7303151	G	G	7303151	3	3	227	1	0	0	0	0	1	0	0	0	3595	217	8	5	2315	5	CLSTN3	12	7303151	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	238630	7303151	126548744	417	172709											
TAS2R20	259295	broad.mit.edu	37	chr12	11150167	11150167	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgagcaaataaaatatgCtgaggctagtagcaagccag	10	7	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11150167	A	A	11150167	3	1	227	1	0	0	0	0	1	0	0	0	15690	797	28	3	625	3	TAS2R20	12	11150167	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3847016	11150167	122701728	418	172710											
SLCO1B1	10599	broad.mit.edu	37	chr12	21353597	21353597	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agccttcatctaaggctaacAtcttattgggtaagacatat	7	8	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21353597	T	T	21353597	3	4	227	1	0	0	0	0	1	0	0	0	14837	217	8	5	1156	5	SLCO1B1	12	21353597	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	10203430	21353597	112498298	419	172711											
SOX5	6660	broad.mit.edu	37	chr12	24048570	24048570	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtatcttatgctgcttattGgaacaaatttaaagaattct	6	6	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24048570	A	A	24048570	1	1	227	0	1	0	0	0	0	0	0	0	15068	1363	47	4		4	SOX5	12	24048570	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2694973	24048570	109803325	420	172712											
C12orf35	55196	broad.mit.edu	37	chr12	32134697	32134697	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtaccatcacagcagtatGccacgcaaactgacaaaaga	7	12	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32134697	A	A	32134697	3	1	227	1	0	0	0	0	1	0	0	0	1695	1319	46	4	810	4	C12orf35	12	32134697	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	8086127	32134697	101717198	421	172713											
SYT10	341359	broad.mit.edu	37	chr12	33560221	33560221	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcgttgtaaaacaggttCtgtgcccatgctaaaatcaa	7	10	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33560221	A	A	33560221	4	1	227	1	0	0	0	0	0	1	0	0	15585	922	32	3	1011	3	SYT10	12	33560221	Nonsense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1425524	33560221	100291674	422	172714											
FAM113B	91523	broad.mit.edu	37	chr12	47529306	47529306	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agatcagcactgagatgatgAtgagcagaatggtcaggagg	15	5	2	6			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	47529306	C	C	47529306	1	2	227	0	1	0	0	0	0	0	0	0	5448	348	12	5		5	FAM113B	12	47529306	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	13969085	47529306	86322589	423	172715											
TMEM106C	79022	broad.mit.edu	37	chr12	48359580	48359580	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgacacattgaaccttgatAtctgactgcctgggtcggtc	10	10	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48359580	G	G	48359580	1	3	227	0	1	0	0	0	0	0	0	0	16145	464	16	5		5	TMEM106C	12	48359580	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	830274	48359580	85492315	424	172716											
LMBR1L	55716	broad.mit.edu	37	chr12	49497572	49497572	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcatcaacatcaccactgTctcatagacccggcccagga	8	15	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49497572	C	C	49497572	3	2	227	1	0	0	0	0	1	0	0	0	8915	1667	58	5	1057	5	LMBR1L	12	49497572	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	1137992	49497572	84354323	425	172717											
FMNL3	91010	broad.mit.edu	37	chr12	50060007	50060007	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcctgtaagggaaacatgCatatgcgtatccacaaagac	9	9	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50060007	A	A	50060007	1	1	227	0	1	0	0	0	0	0	0	0	6011	725	25	3		3	FMNL3	12	50060007	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	562435	50060007	83791888	426	172718											
KRT6B	3854	broad.mit.edu	37	chr12	52841399	52841399	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtgagaccttccctggacGagcatgggaagcctcagtgg	16	10	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52841399	T	T	52841399	1	4	227	0	1	0	0	0	0	0	0	0	8552	1073	37	3		3	KRT6B	12	52841399	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2781392	52841399	81010496	427	172719											
KRT74	121391	broad.mit.edu	37	chr12	52962032	52962032	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaggctcatgagctcctGgtactcgcgcagcatccgcg	11	14	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52962032	A	A	52962032	4	1	227	1	0	0	0	0	0	1	0	0	8558	1357	47	4	325	4	KRT74	12	52962032	Nonsense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	120633	52962032	80889863	428	172720											
KRT72	140807	broad.mit.edu	37	chr12	52986255	52986255	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctggagctcaaccttattCatgtaagcagcatccacgtc	8	13	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52986255	A	A	52986255	3	1	227	1	0	0	0	0	1	0	0	0	8556	826	29	3	836	3	KRT72	12	52986255	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	24223	52986255	80865640	429	172721											
ESPL1	9700	broad.mit.edu	37	chr12	53671429	53671429	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggcatgggcatctccaTggcttcctaagagtggaaca	13	9	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	53671429	C	C	53671429	1	2	227	0	1	0	0	0	0	0	0	0	5295	1479	51	5		5	ESPL1	12	53671429	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	685174	53671429	80180466	430	172722											
ATP5G2	517	broad.mit.edu	37	chr12	54059050	54059050	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtataggaaaaggaacacaCggggccaaccagacgcggga	15	9	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54059050	A	A	54059050	1	1	227	0	1	0	0	0	0	0	0	0	1158	551	19	3		3	ATP5G2	12	54059050	3'UTR	SNP	C	TCGA-91-6831-01A-11D-1855-08	387621	54059050	79792845	431	172723											
STAT6	6778	broad.mit.edu	37	chr12	57501993	57501993	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagatgccgcaggtgttgGggaaagtcgacatagagccg	16	7	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57501993	A	A	57501993	2	1	227	1	0	0	0	0	0	0	0	1	15388	1219	43	4		4	STAT6	12	57501993	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	3442943	57501993	76349902	432	172724											
GEFT	115557	broad.mit.edu	37	chr12	58006846	58006846	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cccccagggcccgtcagtggCctgaggagatggttggatca	15	12	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58006846	G	G	58006846	2	3	227	1	0	0	0	0	0	0	0	1	6392	726	26	4		4	GEFT	12	58006846	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	504853	58006846	75845049	433	172725											
GEFT	115557	broad.mit.edu	37	chr12	58010383	58010383	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cattccttccttttatctggTccttcctacttcccatccct	2	17	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58010383	A	A	58010383	1	1	227	0	1	0	0	0	0	0	0	0	6392	1682	58	5		5	GEFT	12	58010383	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	3537	58010383	75841512	434	172726											
MON2	23041	broad.mit.edu	37	chr12	62928628	62928628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttttcctttaagttaGtagggctgtttgggaagaaa	11	3	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62928628	T	T	62928628	3	4	227	1	0	0	0	0	1	0	0	0	9794	1029	36	3	1687	3	MON2	12	62928628	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	4918245	62928628	70923267	435	172727											
GRIP1	23426	broad.mit.edu	37	chr12	66788002	66788002	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttacctttcagctaatccCcctttagtgaggcttgaaat	6	10	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66788002	G	G	66788002	2	3	227	1	0	0	0	0	0	0	0	1	6853	610	22	4		4	GRIP1	12	66788002	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	3859374	66788002	67063893	436	172728											
RAP1B	5908	broad.mit.edu	37	chr12	69036763	69036763	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtttttagagcaagttttCgcccagccatgttgggattc	11	8	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69036763	T	T	69036763	1	4	227	0	1	0	0	0	0	0	0	0	13144	899	31	4		4	RAP1B	12	69036763	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2248761	69036763	64815132	437	172729											
PTPRR	5801	broad.mit.edu	37	chr12	71066471	71066471	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtggtcaagacagaggagCggatagcgtgggtctcccag	17	8	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	71066471	G	G	71066471	1	3	227	0	1	0	0	0	0	0	0	0	12918	783	27	4		4	PTPRR	12	71066471	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2029708	71066471	62785424	438	172730											
TRHDE	29953	broad.mit.edu	37	chr12	72867050	72867051	+	Intron	INS	-	A	A													ccttagagatgactaaaaatINSaccaactgatgcatgaaaat							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72867051	A	A	72867050	6	5	227	0	1	1	1	0	0	0	0	0	16603	1421	49	0		0	TRHDE	12	72867050	Intron	INS	-	TCGA-91-6831-01A-11D-1855-08	1800579	72867050	60984845	439	172731											
CEP290	80184	broad.mit.edu	37	chr12	88515073	88515073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagttgtcattttatattTgtaagatgaaagttttgttt	7	1	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	88515073	C	C	88515073	1	2	227	0	1	0	0	0	0	0	0	0	3283	1827	63	5		5	CEP290	12	88515073	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	15648023	88515073	45336822	440	172732											
C12orf63	374467	broad.mit.edu	37	chr12	97078910	97078910	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcactcaccaatgtcaccAacagtcattcacctccgggt	5	17	5	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	97078910	C	C	97078910	3	2	227	1	0	0	0	0	1	0	0	0	1719	130	5	5	1213	5	C12orf63	12	97078910	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	8563837	97078910	36772985	441	172733											
STAB2	55576	broad.mit.edu	37	chr12	104149163	104149163	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcctcccagaactgtggCtctggtgtggttgggatagt	14	9	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104149163	G	G	104149163	2	3	227	1	0	0	0	0	0	0	0	1	15356	784	28	4		4	STAB2	12	104149163	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	7070253	104149163	29702732	442	172734											
NOS1	4842	broad.mit.edu	37	chr12	117715889	117715889	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctctaggcggtttccagccCtgctgtatgcatatctgcaa	9	13	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117715889	G	G	117715889	3	3	227	1	0	0	0	0	1	0	0	0	10636	680	24	4	2849	4	NOS1	12	117715889	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	13566726	117715889	16136006	443	172735											
RFC5	5985	broad.mit.edu	37	chr12	118469111	118469111	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggccattcacaattctcAgggctcagcagtgatgggag	14	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118469111	G	G	118469111	1	3	227	0	1	0	0	0	0	0	0	0	13356	203	7	5		5	RFC5	12	118469111	3'UTR	SNP	A	TCGA-91-6831-01A-11D-1855-08	753222	118469111	15382784	444	172736											
TMEM132B	114795	broad.mit.edu	37	chr12	126068361	126068361	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcgcccctgtggtatgcaCgtttgctgatctgagccctc	11	14	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126068361	T	T	126068361	1	4	227	0	1	0	0	0	0	0	0	0	16169	551	19	4		4	TMEM132B	12	126068361	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	7599250	126068361	7783534	445	172737											
GLT1D1	144423	broad.mit.edu	37	chr12	129360514	129360514	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaggatgcctttgactttGaaagccgatctgagattgca	11	7	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129360514	T	T	129360514	4	4	227	1	0	0	0	0	0	1	0	0	6529	1291	45	3	130	3	GLT1D1	12	129360514	Nonsense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	3292153	129360514	4491381	446	172738											
SFRS8	6433	broad.mit.edu	37	chr12	132237594	132237594	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgccgggggaagggctcTtgtggctgcattgtggactc	16	9	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132237594	C	C	132237594	1	2	227	0	1	0	0	0	0	0	0	0	14296	1624	56	5		5	SFRS8	12	132237594	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	2877080	132237594	1614301	447	172739											
TPTE2	93492	broad.mit.edu	37	chr13	20000696	20000696	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aattgagaactacaaacctaGataacgataacaaaagttcc	5	8	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20000696	C	C	20000696	1	2	227	0	1	0	0	0	0	0	0	0	16555	957	33	4		4	TPTE2	13	20000696	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08		20000696	95169182	448	172740											
PARP4	143	broad.mit.edu	37	chr13	25017845	25017845	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcataatctctgattagagcTcgggctgccagcttgtggat	11	9	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25017845	A	A	25017845	2	1	227	1	0	0	0	0	0	0	0	1	11557	1538	54	5		5	PARP4	13	25017845	Silent	SNP	T	TCGA-91-6831-01A-11D-1855-08	5017149	25017845	90152033	449	172741											
DCLK1	9201	broad.mit.edu	37	chr13	36383313	36383313	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtaaaatcaatgactttcctCctccaagccaaaaataaaac	3	11	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36383313	A	A	36383313	1	1	227	0	1	0	0	0	0	0	0	0	4324	870	30	3		3	DCLK1	13	36383313	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	11365468	36383313	78786565	450	172742											
TRPC4	7223	broad.mit.edu	37	chr13	38225620	38225620	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaggagaacatgacaactGatgataggttccttaattaa	8	6	0	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38225620	T	T	38225620	1	4	227	0	1	0	0	0	0	0	0	0	16705	1305	45	3		3	TRPC4	13	38225620	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1842307	38225620	76944258	451	172743											
ZC3H13	23091	broad.mit.edu	37	chr13	46543169	46543169	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctatagtcacgtgaggCgtctctactttttctactcg	7	11	5	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46543169	A	A	46543169	2	1	227	1	0	0	0	0	0	0	0	1	17691	755	27	3		3	ZC3H13	13	46543169	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	8317549	46543169	68626709	452	172744											
GPC5	2262	broad.mit.edu	37	chr13	92345398	92345398	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cagatggacggtgttagcatGaatactaaaccttctcatgt	9	8	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	92345398	C	C	92345398	1	2	227	0	1	0	0	0	0	0	0	0	6666	1305	45	4		4	GPC5	13	92345398	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	45802229	92345398	22824480	453	172745											
OR4N2	390429	broad.mit.edu	37	chr14	20295546	20295546	+	5'Flank	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tttagctgtataactagtatCtagttggaagacatagtaat	8	4	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20295546	G	G	20295546	1	3	227	0	1	0	0	0	0	0	0	0	11171	928	32	4		4	OR4N2	14	20295546	5'Flank	SNP	C	TCGA-91-6831-01A-11D-1855-08		20295546	87053994	454	172746											
OR4K1	79544	broad.mit.edu	37	chr14	20404276	20404276	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtctatttcctgggcgGtgggcgttcttcattctgtg	13	8	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20404276	T	T	20404276	3	4	227	1	0	0	0	0	1	0	0	0	11161	1261	44	3	453	3	OR4K1	14	20404276	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	108730	20404276	86945264	455	172747											
OR4K13	390433	broad.mit.edu	37	chr14	20502920	20502920	+	5'Flank	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	atggtttgctctttccatatCgtcaactttatcccataatg	5	10	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20502920	G	G	20502920	1	3	227	0	1	0	0	0	0	0	0	0	11162	899	31	4		4	OR4K13	14	20502920	5'Flank	SNP	C	TCGA-91-6831-01A-11D-1855-08	98644	20502920	86846620	456	172748											
OR5AU1	390445	broad.mit.edu	37	chr14	21623231	21623231	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtgcggtcctgggtcaaGgagtagctggacctggggcg	18	9	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21623231	A	A	21623231	2	1	227	1	0	0	0	0	0	0	0	1	11241	987	35	4		4	OR5AU1	14	21623231	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	1120311	21623231	85726309	457	172749											
RPGRIP1	57096	broad.mit.edu	37	chr14	21762760	21762760	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	gatttatgctctctggacaaGatgtgatgagacatctaaag	10	6	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21762760	C	C	21762760	1	2	227	0	1	0	0	0	0	0	0	0	13660	957	33	4		4	RPGRIP1	14	21762760	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	139529	21762760	85586780	458	172750											
ACIN1	22985	broad.mit.edu	37	chr14	23562610	23562610	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcatgaggacttaagcatCaaatatacaacaccacgtcc	6	11	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	23562610	G	G	23562610	1	3	227	0	1	0	0	0	0	0	0	0	142	841	29	4		4	ACIN1	14	23562610	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	1799850	23562610	83786930	459	172751											
MYH6	4624	broad.mit.edu	37	chr14	23866736	23866736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaggtgtcctggcaccCctgggcccttcttacccggt	10	18	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23866736	A	A	23866736	1	1	227	0	1	0	0	0	0	0	0	0	10132	638	22	2		2	MYH6	14	23866736	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	304126	23866736	83482804	460	172752											
RALGAPA1	253959	broad.mit.edu	37	chr14	36278087	36278087	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccacagccggctcccagCcgggtcccggcggcagaaag	14	17	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36278087	A	A	36278087	1	1	227	0	1	0	0	0	0	0	0	0	13121	754	26	3		3	RALGAPA1	14	36278087	5'UTR	SNP	C	TCGA-91-6831-01A-11D-1855-08	12411351	36278087	71071453	461	172753											
MIA2	117153	broad.mit.edu	37	chr14	39703403	39703403	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacaaaactgctggcagacCttaaaaaatgtggtgacttg	10	7	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39703403	T	T	39703403	3	4	227	1	0	0	0	0	1	0	0	0	9657	681	24	4	87	4	MIA2	14	39703403	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3425316	39703403	67646137	462	172754											
CDKL1	8814	broad.mit.edu	37	chr14	50805555	50805555	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctccaattttctttttctCtgttagactgacctccaatg	5	11	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50805555	A	A	50805555	1	1	227	0	1	0	0	0	0	0	0	0	3183	928	32	3		3	CDKL1	14	50805555	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	11102152	50805555	56543985	463	172755											
PTGER2	5732	broad.mit.edu	37	chr14	52781431	52781431	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctggcggggggacgtgggGtgcagcgccggccgcaggag	23	11	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52781431	T	T	52781431	2	4	227	1	0	0	0	0	0	0	0	1	12849	1248	44	3		3	PTGER2	14	52781431	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	1975876	52781431	54568109	464	172756											
NRXN3	9369	broad.mit.edu	37	chr14	78709987	78709987	+	RNA	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggatctcaagtatggaaactCggagcctcggcttctgggga	14	9	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78709987	A	A	78709987	1	1	227	0	1	0	0	0	0	0	0	0	10762	899	31	3		3	NRXN3	14	78709987	RNA	SNP	C	TCGA-91-6831-01A-11D-1855-08	25928556	78709987	28639553	465	172757											
EML5	161436	broad.mit.edu	37	chr14	89181381	89181381	+	Frame_Shift_Del	DEL	C	-	-													gagtgatgaaactaagggatCccaaacactcgccaactttt							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	89181381	-	-	89181381	7	5	227	1	0	1	0	1	0	0	0	0	5142	855	30	0	4727	0	EML5	14	89181381	Frame_Shift_Del	DEL	C	TCGA-91-6831-01A-11D-1855-08	10471394	89181381	18168159	466	172758											
BCL11B	64919	broad.mit.edu	37	chr14	99641943	99641943	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccgccagggggcatgggCggcagcggcggcgtgctcag	21	12	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99641943	T	T	99641943	2	4	227	1	0	0	0	0	0	0	0	1	1369	755	27	4		4	BCL11B	14	99641943	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	10460562	99641943	7707597	467	172759											
PPP1R13B	23368	broad.mit.edu	37	chr14	104220700	104220700	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacctgaggtcaggagttcGagaccagcctggccaacatg	12	12	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104220700	A	A	104220700	1	1	227	0	1	0	0	0	0	0	0	0	12458	1073	37	4		4	PPP1R13B	14	104220700	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	4578757	104220700	3128840	468	172760											
C15orf2	23742	broad.mit.edu	37	chr15	24923531	24923531	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtcatcttgcagtctacCtttgtctccaggaaggagga	10	10	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24923531	T	T	24923531	2	4	227	1	0	0	0	0	0	0	0	1	1797	668	24	4		4	C15orf2	15	24923531	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08		24923531	77607861	469	172761											
RYR3	6263	broad.mit.edu	37	chr15	34140553	34140553	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagctggagtttgatggccTatatatcaccgaacagccat	10	9	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	34140553	C	C	34140553	3	2	227	1	0	0	0	0	1	0	0	0	13881	1522	53	5	13933	5	RYR3	15	34140553	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	9217022	34140553	68390839	470	172762											
ACTC1	70	broad.mit.edu	37	chr15	35086936	35086936	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgcggggcgcgtcatcgCccgcaaagccggccttcacc	13	18	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35086936	A	A	35086936	3	1	227	1	0	0	0	0	1	0	0	0	195	739	26	3	1083	3	ACTC1	15	35086936	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	946383	35086936	67444456	471	172763											
RPAP1	26015	broad.mit.edu	37	chr15	41820294	41820294	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctttgccctaatccttcGtttgcccccctatgatccta	6	15	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41820294	A	A	41820294	1	1	227	0	1	0	0	0	0	0	0	0	13652	1160	40	4		4	RPAP1	15	41820294	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	6733358	41820294	60711098	472	172764											
FRMD5	84978	broad.mit.edu	37	chr15	44281691	44281691	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccagggaggagctggaggCcaccatggccatctcctgct	13	14	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44281691	G	G	44281691	1	3	227	0	1	0	0	0	0	0	0	0	6113	754	26	4		4	FRMD5	15	44281691	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2461397	44281691	58249701	473	172765											
CYP19A1	1588	broad.mit.edu	37	chr15	51535050	51535050	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatggtggcagcaggcatGgcttcaggcacgatgctggt	17	9	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51535050	A	A	51535050	2	1	227	1	0	0	0	0	0	0	0	1	4181	1335	47	4		4	CYP19A1	15	51535050	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	7253359	51535050	50996342	474	172766											
NARG2	79664	broad.mit.edu	37	chr15	60740324	60740324	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgatgtatcttcaacatagtCctgaagttcatatggcaatc	7	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60740324	A	A	60740324	3	1	227	1	0	0	0	0	1	0	0	0	10263	855	30	3	832	3	NARG2	15	60740324	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	9205274	60740324	41791068	475	172767											
CLPX	10845	broad.mit.edu	37	chr15	65447222	65447222	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaggctatgcaatggaacCaccacaggcaaccgtcccac	8	15	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65447222	T	T	65447222	2	4	227	1	0	0	0	0	0	0	0	1	3588	581	21	4		4	CLPX	15	65447222	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	4706898	65447222	37084170	476	172768											
IGDCC3	9543	broad.mit.edu	37	chr15	65622213	65622213	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctcaaggctggggacagGgacgggttggaggctttggc	21	7	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65622213	T	T	65622213	1	4	227	0	1	0	0	0	0	0	0	0	7638	1247	43	2		2	IGDCC3	15	65622213	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	174991	65622213	36909179	477	172769											
ITGA11	22801	broad.mit.edu	37	chr15	68632067	68632067	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcctatgaccagtgacGcctccaccagccacctcggg	10	17	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68632067	T	T	68632067	1	4	227	0	1	0	0	0	0	0	0	0	7944	1102	38	3		3	ITGA11	15	68632067	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3009854	68632067	33899325	478	172770											
CORO2B	10391	broad.mit.edu	37	chr15	69006317	69006317	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggtgttcctggggaacatGaagcggctcctcacgacagg	15	10	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69006317	T	T	69006317	3	4	227	1	0	0	0	0	1	0	0	0	3789	1290	45	3	724	3	CORO2B	15	69006317	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	374250	69006317	33525075	479	172771											
IREB2	3658	broad.mit.edu	37	chr15	78730689	78730689	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctccggcgatggacgccCcaaaagcaggtcagtttcgg	14	12	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78730689	A	A	78730689	3	1	227	1	0	0	0	0	1	0	0	0	7896	623	22	2	12	2	IREB2	15	78730689	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	9724372	78730689	23800703	480	172772											
AP3B2	8120	broad.mit.edu	37	chr15	83358226	83358226	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgggaggtacaagaagTcagctgagggcacaagggtg	18	6	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	83358226	C	C	83358226	1	2	227	0	1	0	0	0	0	0	0	0	747	1682	58	5		5	AP3B2	15	83358226	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	4627537	83358226	19173166	481	172773											
SLC28A1	9154	broad.mit.edu	37	chr15	85488259	85488259	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatggaggaagggtggacCagagacttgaaacagtgttc	14	7	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85488259	T	T	85488259	1	4	227	0	1	0	0	0	0	0	0	0	14645	609	21	4		4	SLC28A1	15	85488259	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2130033	85488259	17043133	482	172774											
ABHD2	11057	broad.mit.edu	37	chr15	89659582	89659582	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgccatgctggagactccCgaactcccagccgtgtttga	10	13	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89659582	A	A	89659582	2	1	227	1	0	0	0	0	0	0	0	1	82	639	23	1		1	ABHD2	15	89659582	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	4171323	89659582	12871810	483	172775											
NTAN1	123803	broad.mit.edu	37	chr16	15141370	15141370	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacctcagctttggtgtcGgttccgtcacaatgtgtcaa	12	10	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15141370	A	A	15141370	2	1	227	1	0	0	0	0	0	0	0	1	10790	1103	39	4		4	NTAN1	16	15141370	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08		15141370	75213383	484	172776											
GP2	2813	broad.mit.edu	37	chr16	20329466	20329466	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaacactttcctgtaaaCgttagtaaggccaaatgata	8	7	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20329466	A	A	20329466	1	1	227	0	1	0	0	0	0	0	0	0	6647	551	19	3		3	GP2	16	20329466	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	5188096	20329466	70025287	485	172777											
ZP2	7783	broad.mit.edu	37	chr16	21214498	21214498	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatagatcaccatggatacTgtctctggccgaaggagaaa	12	8	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	21214498	C	C	21214498	2	2	227	1	0	0	0	0	0	0	0	1	18345	1567	55	5		5	ZP2	16	21214498	Silent	SNP	T	TCGA-91-6831-01A-11D-1855-08	885032	21214498	69140255	486	172778											
DOC2A	8448	broad.mit.edu	37	chr16	30021433	30021433	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcaggtcctggtccccgGgggaagtagtcagagatctg	14	11	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30021433	T	T	30021433	2	4	227	1	0	0	0	0	0	0	0	1	4723	1219	43	2		2	DOC2A	16	30021433	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	8806935	30021433	60333320	487	172779											
C16orf92	146378	broad.mit.edu	37	chr16	30035561	30035561	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcctaaagagccggacaaGggctctggactcaacctgag	14	11	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30035561	A	A	30035561	1	1	227	0	1	0	0	0	0	0	0	0	1859	1015	35	4		4	C16orf92	16	30035561	3'UTR	SNP	G	TCGA-91-6831-01A-11D-1855-08	14128	30035561	60319192	488	172780											
ALDOA	226	broad.mit.edu	37	chr16	30080144	30080144	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcctcttctcttagggttgGatgggctgtctgagcgctgt	13	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	30080144	C	C	30080144	3	2	227	1	0	0	0	0	1	0	0	0	507	1174	41	4	399	4	ALDOA	16	30080144	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	44583	30080144	60274609	489	172781											
SRCAP	10847	broad.mit.edu	37	chr16	30748760	30748760	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccagtttctgccccagtaCccatttcagccccaaatcca	4	18	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30748760	T	T	30748760	3	4	227	1	0	0	0	0	1	0	0	0	15253	507	18	4	7525	4	SRCAP	16	30748760	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	668616	30748760	59605993	490	172782											
ITGAM	3684	broad.mit.edu	37	chr16	31336387	31336387	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcacctcctccagagaAggacccgtaccatgacccgc	7	19	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31336387	G	G	31336387	1	3	227	0	1	0	0	0	0	0	0	0	7957	87	3	5		5	ITGAM	16	31336387	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	587627	31336387	59018366	491	172783											
ABCC12	94160	broad.mit.edu	37	chr16	48141209	48141209	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagacacagactcggcatcTtccaatgccaaagggaaact	8	12	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48141209	A	A	48141209	1	1	227	0	1	0	0	0	0	0	0	0	52	1624	56	5		5	ABCC12	16	48141209	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	16804822	48141209	42213544	492	172784											
NKD1	85407	broad.mit.edu	37	chr16	50583222	50583222	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccgcgaaccccctcctgGcccccgtgccgtggtccttc	10	21	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50583222	A	A	50583222	1	1	227	0	1	0	0	0	0	0	0	0	10536	1218	42	4		4	NKD1	16	50583222	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2442013	50583222	39771531	493	172785											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53706851	53706852	+	Frame_Shift_Ins	INS	-	T	T													gactgcagcattttaaacgcINStgctctttaagttgcatgtt					rs148808566		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53706852	T	T	53706851	7	5	227	1	0	1	1	0	0	0	0	0	13661	796	28	0	3067	0	RPGRIP1L	16	53706851	Frame_Shift_Ins	INS	-	TCGA-91-6831-01A-11D-1855-08	3123629	53706851	36647902	494	172786											
CDH8	1006	broad.mit.edu	37	chr16	61689618	61689618	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttgccaaaatactgagGgaattatctgaaaaaagtaa	8	5	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61689618	T	T	61689618	2	4	227	1	0	0	0	0	0	0	0	1	3146	1219	43	2		2	CDH8	16	61689618	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	7982767	61689618	28665135	495	172787											
CDH8	1006	broad.mit.edu	37	chr16	61761041	61761041	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ataaaaatgcctcatattcgGatgcgaattcaggggcgttg	11	7	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61761041	C	C	61761041	3	2	227	1	0	0	0	0	1	0	0	0	3146	1174	41	4	922	4	CDH8	16	61761041	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	71423	61761041	28593712	496	172788											
FUK	197258	broad.mit.edu	37	chr16	70500067	70500067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgatgactgtggcagGgctttcacctgcctccccgt	10	15	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70500067	T	T	70500067	3	4	227	1	0	0	0	0	1	0	0	0	6156	1223	43	2	332	2	FUK	16	70500067	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	8739026	70500067	19854686	497	172789											
PHLPP2	23035	broad.mit.edu	37	chr16	71710350	71710350	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctgcagagaaaactcacTgttggaactggcatagaggg	14	7	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71710350	A	A	71710350	3	1	227	1	0	0	0	0	1	0	0	0	11950	1594	55	5	2544	5	PHLPP2	16	71710350	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	1210283	71710350	18644403	498	172790											
CLEC3A	10143	broad.mit.edu	37	chr16	78056652	78056652	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaggtaatggggcttcTcaatcaagcaaaattctagg	12	6	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	78056652	C	C	78056652	1	2	227	0	1	0	0	0	0	0	0	0	3542	1566	54	5		5	CLEC3A	16	78056652	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	6346302	78056652	12298101	499	172791											
CDYL2	124359	broad.mit.edu	37	chr16	80718806	80718806	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtttctcaaccgacgggcctCgactgtcacgcagcagcttg	11	14	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80718806	G	G	80718806	3	3	227	1	0	0	0	0	1	0	0	0	3216	884	31	4	1299	4	CDYL2	16	80718806	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2662154	80718806	9635947	500	172792											
FOXC2	2303	broad.mit.edu	37	chr16	86602465	86602465	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacgtgtcccgggacctccCctccccggcccgctccggct	11	21	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	86602465	T	T	86602465	1	4	227	0	1	0	0	0	0	0	0	0	6053	638	22	4		4	FOXC2	16	86602465	3'UTR	SNP	C	TCGA-91-6831-01A-11D-1855-08	5883659	86602465	3752288	501	172793											
ASGR1	432	broad.mit.edu	37	chr17	7080027	7080027	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attctcacacacagactcacAcacacacacactccctctca	1	19	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7080027	G	G	7080027	1	3	227	0	1	0	0	0	0	0	0	0	1043	174	6	5		5	ASGR1	17	7080027	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08		7080027	74115183	502	172794											
SPEM1	374768	broad.mit.edu	37	chr17	7324850	7324850	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccctgtccggctgctacCccctagcctctggatccagc	10	18	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7324850	A	A	7324850	3	1	227	1	0	0	0	0	1	0	0	0	15155	623	22	2	866	2	SPEM1	17	7324850	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	244823	7324850	73870360	503	172795											
TP53	7157	broad.mit.edu	37	chr17	7574026	7574026	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acatctcgaagcgctcacgcCcacggatctgcagcaacaga	9	15	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7574026	A	A	7574026	3	1	227	1	0	0	0	0	1	0	0	0	16505	623	22	2	188	2	TP53	17	7574026	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	249176	7574026	73621184	504	172796											
C17orf68	80169	broad.mit.edu	37	chr17	8131487	8131487	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggactctcaggccatccTtgcagttcagttaacaggag	11	10	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8131487	C	C	8131487	1	2	227	0	1	0	0	0	0	0	0	0	1892	1624	56	5		5	C17orf68	17	8131487	3'UTR	SNP	T	TCGA-91-6831-01A-11D-1855-08	557461	8131487	73063723	505	172797											
PIK3R6	146850	broad.mit.edu	37	chr17	8770791	8770791	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctccgttccacccctctAtctgttctgctcagatctgc	5	18	5	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	8770791	G	G	8770791	1	3	227	0	1	0	0	0	0	0	0	0	12018	464	16	5		5	PIK3R6	17	8770791	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	639304	8770791	72424419	506	172798											
NOS2	4843	broad.mit.edu	37	chr17	26114991	26114991	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tctccacccctgtggcacctCctccttggggtccacctggc	9	19	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26114991	A	A	26114991	1	1	227	0	1	0	0	0	0	0	0	0	10638	870	30	3		3	NOS2	17	26114991	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	17344200	26114991	55080219	507	172799											
FOXN1	8456	broad.mit.edu	37	chr17	26864298	26864298	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtggggcaggtgacttGgcagccccgggcagtggtgg	21	9	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26864298	A	A	26864298	2	1	227	1	0	0	0	0	0	0	0	1	6079	1339	47	4		4	FOXN1	17	26864298	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	749307	26864298	54330912	508	172800											
PIGS	94005	broad.mit.edu	37	chr17	26890572	26890572	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtggtacaccaagagCaaaacaccattccatctccc	6	14	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26890572	A	A	26890572	1	1	227	0	1	0	0	0	0	0	0	0	11993	725	25	3		3	PIGS	17	26890572	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	26274	26890572	54304638	509	172801											
SLC6A4	6532	broad.mit.edu	37	chr17	28544443	28544443	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctaggaccaagtgGtcactgaggcccaggaagag	16	9	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28544443	T	T	28544443	1	4	227	0	1	0	0	0	0	0	0	0	14800	1276	44	3		3	SLC6A4	17	28544443	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1653871	28544443	52650767	510	172802											
BLMH	642	broad.mit.edu	37	chr17	28576109	28576109	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctaacacagctagcacctCttcagggacatgcttcctgt	7	14	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28576109	A	A	28576109	4	1	227	1	0	0	0	0	0	1	0	0	1452	922	32	3	77	3	BLMH	17	28576109	Nonsense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	31666	28576109	52619101	511	172803											
MYO1D	4642	broad.mit.edu	37	chr17	31048075	31048075	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtatgtctggcggaaggCaaatcctgcccgacgcactc	11	14	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31048075	A	A	31048075	3	1	227	1	0	0	0	0	1	0	0	0	10165	710	25	3	1173	3	MYO1D	17	31048075	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2471966	31048075	50147135	512	172804											
MYO19	80179	broad.mit.edu	37	chr17	34863665	34863665	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcccttaggtagtgagCcacaaaatgctgctgcagct	12	11	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34863665	A	A	34863665	3	1	227	1	0	0	0	0	1	0	0	0	10161	739	26	3	1630	3	MYO19	17	34863665	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3815590	34863665	46331545	513	172805											
DHX8	1659	broad.mit.edu	37	chr17	41573700	41573700	+	Intron	DEL	C	-	-													ccattgaattgggtgatttgCctgtagtttaacccagtggc							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	41573700	-	-	41573700	6	5	227	0	1	1	0	1	0	0	0	0	4555	754	26	0		0	DHX8	17	41573700	Intron	DEL	C	TCGA-91-6831-01A-11D-1855-08	6710035	41573700	39621510	514	172806											
CRHR1	1394	broad.mit.edu	37	chr17	43911012	43911012	+	Intron	DEL	C	-	-													ccccgacctggccctctttgCcgagccagcgggcagcccgt							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43911012	-	-	43911012	6	5	227	0	1	1	0	1	0	0	0	0	3903	754	26	0		0	CRHR1	17	43911012	Intron	DEL	C	TCGA-91-6831-01A-11D-1855-08	2337312	43911012	37284198	515	172807											
GOSR2	9570	broad.mit.edu	37	chr17	45008638	45008638	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacaggcttttctccctgGgggaggtgatagaatattct	12	7	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45008638	T	T	45008638	1	4	227	0	1	0	0	0	0	0	0	0	6642	1247	43	2		2	GOSR2	17	45008638	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1097626	45008638	36186572	516	172808											
PDK2	5164	broad.mit.edu	37	chr17	48186727	48186727	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agacctgcagctcttctccaTggaaggctttgggaccgatg	12	11	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48186727	C	C	48186727	3	2	227	1	0	0	0	0	1	0	0	0	11770	1464	51	5	1084	5	PDK2	17	48186727	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	3178089	48186727	33008483	517	172809											
SGCA	6442	broad.mit.edu	37	chr17	48244787	48244787	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accacgctacacccacttgtGggccgtgtctttgtgcacac	9	15	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48244787	A	A	48244787	2	1	227	1	0	0	0	0	0	0	0	1	14312	1335	47	4		4	SGCA	17	48244787	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	58060	48244787	32950423	518	172810											
MPO	4353	broad.mit.edu	37	chr17	56356880	56356880	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccacccccagccagccGcacctgttgttgcacatccc	8	20	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56356880	T	T	56356880	1	4	227	0	1	0	0	0	0	0	0	0	9826	1102	38	3		3	MPO	17	56356880	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	8112093	56356880	24838330	519	172811											
ABCA6	23460	broad.mit.edu	37	chr17	67082710	67082710	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctatgacatagatgttcggTaggtagttctaaaagtaatg	10	5	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67082710	A	A	67082710	1	1	227	0	1	0	0	0	0	0	0	0	36	1653	57	5		5	ABCA6	17	67082710	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	10725830	67082710	14112500	520	172812											
KIF19	124602	broad.mit.edu	37	chr17	72351374	72351374	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaacccaggtggtggttctCgacgggctacccgtgggccc	14	15	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72351374	A	A	72351374	2	1	227	1	0	0	0	0	0	0	0	1	8352	876	31	3		3	KIF19	17	72351374	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	5268664	72351374	8843836	521	172813											
TNRC6C	57690	broad.mit.edu	37	chr17	76087626	76087626	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcccccagtggacgcaccCcaactccatggataacttgc	7	18	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76087626	G	G	76087626	3	3	227	1	0	0	0	0	1	0	0	0	16465	623	22	4	3954	4	TNRC6C	17	76087626	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3736252	76087626	5107584	522	172814											
ZFP161	7541	broad.mit.edu	37	chr18	5291531	5291531	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaagtcttttgattctgGggtctccatggattctactt	8	11	4	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5291531	T	T	5291531	3	4	227	1	0	0	0	0	1	0	0	0	17766	1232	43	2	677	2	ZFP161	18	5291531	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08		5291531	72785717	523	172815											
CDH2	1000	broad.mit.edu	37	chr18	25583209	25583209	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatagaaggtatatttattgTtttgatatgtcttattttca	6	2	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25583209	A	A	25583209	1	1	227	0	1	0	0	0	0	0	0	0	3135	1740	60	5		5	CDH2	18	25583209	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	20291678	25583209	52494039	524	172816											
DCC	1630	broad.mit.edu	37	chr18	51025817	51025817	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctttgctaatcctttgCtacctccaccaatgagtgca	7	13	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51025817	A	A	51025817	3	1	227	1	0	0	0	0	1	0	0	0	4315	796	28	3	4154	3	DCC	18	51025817	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	25442608	51025817	27051431	525	172817											
TCF4	6925	broad.mit.edu	37	chr18	52928653	52928653	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acttctgattaaagttcaccCtttacaatggtacatatgga	6	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52928653	G	G	52928653	1	3	227	0	1	0	0	0	0	0	0	0	15817	696	24	4		4	TCF4	18	52928653	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	1902836	52928653	25148595	526	172818											
ATP8B1	5205	broad.mit.edu	37	chr18	55315736	55315736	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatcagctgtccccggtgCgcctgtactccgcggtgcca	14	15	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55315736	A	A	55315736	3	1	227	1	0	0	0	0	1	0	0	0	1198	768	27	3	19	3	ATP8B1	18	55315736	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2387083	55315736	22761512	527	172819											
RNF152	220441	broad.mit.edu	37	chr18	59483393	59483393	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggagatgggcaggggcaGcatgtagcacccattgctgg	16	9	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59483393	A	A	59483393	2	1	227	1	0	0	0	0	0	0	0	1	13564	962	34	4		4	RNF152	18	59483393	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	4167657	59483393	18593855	528	172820											
ZCCHC2	54877	broad.mit.edu	37	chr18	60241328	60241328	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggattctgggaatccatcaAcaactaggtttacaggttac	9	8	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	60241328	G	G	60241328	3	3	227	1	0	0	0	0	1	0	0	0	17713	43	2	5	2064	5	ZCCHC2	18	60241328	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	757935	60241328	17835920	529	172821											
NETO1	81832	broad.mit.edu	37	chr18	70526210	70526210	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattggagaaaagccaaaaGgtccatctcgaacttcaata	7	8	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70526210	A	A	70526210	3	1	227	1	0	0	0	0	1	0	0	0	10434	1000	35	4	1318	4	NETO1	18	70526210	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	10284882	70526210	7551038	530	172822											
SHC2	25759	broad.mit.edu	37	chr19	436423	436423	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgacgtaggccacgtaatcCgtcatgtcctgggggcgggg	17	11	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	436423	T	T	436423	2	4	227	1	0	0	0	0	0	0	0	1	14384	639	23	4		4	SHC2	19	436423	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08		436423	58692560	531	172823											
MED16	10025	broad.mit.edu	37	chr19	872078	872078	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcatgcccagcgaggtgCcgtcccgcagaaagctgtgg	15	12	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	872078	T	T	872078	3	4	227	1	0	0	0	0	1	0	0	0	9527	739	26	4	707	4	MED16	19	872078	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	435655	872078	58256905	532	172824											
ABCA7	10347	broad.mit.edu	37	chr19	1044509	1044509	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccgcctcgcctcccaaaGtgctgggattacaggcatga	10	15	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1044509	A	A	1044509	1	1	227	0	1	0	0	0	0	0	0	0	37	1044	36	4		4	ABCA7	19	1044509	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	172431	1044509	58084474	533	172825											
GPX4	2879	broad.mit.edu	37	chr19	1106305	1106305	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taggggaccagcttcccctgGccacagccgtggcccagatg	13	15	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1106305	A	A	1106305	1	1	227	0	1	0	0	0	0	0	0	0	6808	1218	42	4		4	GPX4	19	1106305	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	61796	1106305	58022678	534	172826											
PCSK4	54760	broad.mit.edu	37	chr19	1487128	1487128	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacccctgccctcctcggGctgccactcaccttggtcac	8	21	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1487128	A	A	1487128	1	1	227	0	1	0	0	0	0	0	0	0	11696	1218	42	4		4	PCSK4	19	1487128	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	380823	1487128	57641855	535	172827											
SLC39A3	29985	broad.mit.edu	37	chr19	2732928	2732928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgccacgctgcccggcaCgccctgggcgctctcaatgc	13	18	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2732928	A	A	2732928	3	1	227	1	0	0	0	0	1	0	0	0	14733	536	19	3	182	3	SLC39A3	19	2732928	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1245800	2732928	56396055	536	172828											
MATK	4145	broad.mit.edu	37	chr19	3779202	3779202	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgggggtagtaggggGcagtgggggctcaggtgcca	22	7	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3779202	T	T	3779202	1	4	227	0	1	0	0	0	0	0	0	0	9424	1218	42	3		3	MATK	19	3779202	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	1046274	3779202	55349781	537	172829											
RANBP3	8498	broad.mit.edu	37	chr19	5917862	5917862	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	atcgtcgctgtcgtcctcctCgttggatggggctgccccag	13	14	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5917862	T	T	5917862	3	4	227	1	0	0	0	0	1	0	0	0	13137	893	31	4	108	4	RANBP3	19	5917862	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2138660	5917862	53211121	538	172830											
RANBP3	8498	broad.mit.edu	37	chr19	5927933	5927933	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgcctgctgttgaacctGgggaaggcataaaaagtcaa	11	8	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5927933	A	A	5927933	1	1	227	0	1	0	0	0	0	0	0	0	13137	1363	47	4		4	RANBP3	19	5927933	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	10071	5927933	53201050	539	172831											
RFX2	5990	broad.mit.edu	37	chr19	5997179	5997179	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cggatgaggtggaaggagccGaagctggcagcgctgcgcag	19	9	0	1	rs147306532		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5997179	A	A	5997179	2	1	227	1	0	0	0	0	0	0	0	1	13371	1049	37	4		4	RFX2	19	5997179	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	69246	5997179	53131804	540	172832											
CD209	30835	broad.mit.edu	37	chr19	7810548	7810548	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctggaagctcacccactgCagccttcagccgggtcagct	10	16	4	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7810548	G	G	7810548	3	3	227	1	0	0	0	0	1	0	0	0	3014	710	25	4	626	4	CD209	19	7810548	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1813369	7810548	51318435	541	172833											
FBN3	84467	broad.mit.edu	37	chr19	8138147	8138147	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgacaggaggcgctcccGcaggtggggggcgacagggc	20	11	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8138147	A	A	8138147	2	1	227	1	0	0	0	0	0	0	0	1	5761	1079	38	4		4	FBN3	19	8138147	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	327599	8138147	50990836	542	172834											
MUC16	94025	broad.mit.edu	37	chr19	9087924	9087924	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagacccagaagagtaagcCattctggctgttgatacatg	11	8	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9087924	A	A	9087924	3	1	227	1	0	0	0	0	1	0	0	0	10067	594	21	2	39968	2	MUC16	19	9087924	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	949777	9087924	50041059	543	172835											
ZNF266	10781	broad.mit.edu	37	chr19	9523936	9523936	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaacagggacacctttagGttttcccacattccttatgc	8	11	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9523936	A	A	9523936	1	1	227	0	1	0	0	0	0	0	0	0	17931	1276	44	4		4	ZNF266	19	9523936	3'UTR	SNP	G	TCGA-91-6831-01A-11D-1855-08	436012	9523936	49605047	544	172836											
ICAM5	7087	broad.mit.edu	37	chr19	10404521	10404521	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	actcggggccgtcatcgaggGgctgttgcgtgtggcccggg	19	11	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10404521	A	A	10404521	3	1	227	1	0	0	0	0	1	0	0	0	7553	1232	43	4	1639	4	ICAM5	19	10404521	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	880585	10404521	48724462	545	172837											
MAST1	22983	broad.mit.edu	37	chr19	12979910	12979910	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaagttcaccccttgctaGtcccatgtctccacgatctc	7	15	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12979910	C	C	12979910	3	2	227	1	0	0	0	0	1	0	0	0	9416	1029	36	4	2890	4	MAST1	19	12979910	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2575389	12979910	46149073	546	172838											
CC2D1A	54862	broad.mit.edu	37	chr19	14040911	14040911	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatacgcagcccagctggagCggcagctgcagttctacacg	12	13	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14040911	T	T	14040911	3	4	227	1	0	0	0	0	1	0	0	0	2752	759	27	4	2837	4	CC2D1A	19	14040911	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1061001	14040911	45088072	547	172839											
OR7C1	26664	broad.mit.edu	37	chr19	14910285	14910285	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcctcagtatagagaaaaCaattttatagtaagagaaaa	6	4	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14910285	G	G	14910285	3	3	227	1	0	0	0	0	1	0	0	0	11311	478	17	4	300	4	OR7C1	19	14910285	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	869374	14910285	44218698	548	172840											
CYP4F22	126410	broad.mit.edu	37	chr19	15661579	15661579	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggacccaggtaacccctctAtttcccctagtccaagccag	7	16	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15661579	G	G	15661579	1	3	227	0	1	0	0	0	0	0	0	0	4222	464	16	5		5	CYP4F22	19	15661579	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	751294	15661579	43467404	549	172841											
ELL	8178	broad.mit.edu	37	chr19	18556214	18556214	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacaaggccaagtaacaccCcaggggcccacagcggctgt	13	14	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18556214	G	G	18556214	1	3	227	0	1	0	0	0	0	0	0	0	5104	638	22	4		4	ELL	19	18556214	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2894635	18556214	40572769	550	172842											
HAPLN4	404037	broad.mit.edu	37	chr19	19373451	19373451	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagagacagaagaaactcaGagggatatagattcagaggc	13	5	2	6			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19373451	A	A	19373451	1	1	227	0	1	0	0	0	0	0	0	0	7023	957	33	4		4	HAPLN4	19	19373451	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	817237	19373451	39755532	551	172843											
ZNF253	56242	broad.mit.edu	37	chr19	19989390	19989390	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atatagggatgtgatgttagAgaactacagaaacttggtct	11	4	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19989390	C	C	19989390	3	2	227	1	0	0	0	0	1	0	0	0	17923	304	11	5	110	5	ZNF253	19	19989390	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	615939	19989390	39139593	552	172844											
ZNF431	170959	broad.mit.edu	37	chr19	21366254	21366255	+	Missense_Mutation	DNP	GG	TT	TT													atgtggcaaaggctttaattGgtcctcaacccttactaaac							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	21366255	TT	TT	21366254	3	4	227	1	0	0	0	0	1	0	0	0	18032	1357	47	2	1166	2	ZNF431	19	21366254	Missense_Mutation	DNP	GG	TCGA-91-6831-01A-11D-1855-08	1376864	21366254	37762729	553	172845											
PDCD5	9141	broad.mit.edu	37	chr19	33073086	33073086	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttctctattaaatttaaGttttttttttccaggatcct	3	6	1	0	rs138654596	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33073086	T	T	33073086	1	4	227	0	1	0	0	0	0	0	0	0	11716	1044	36	3		3	PDCD5	19	33073086	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	11706832	33073086	26055897	554	172846											
ATP4A	495	broad.mit.edu	37	chr19	36044674	36044674	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcacgctttgggttgcgtgGacgcaggtgcatgatgtcac	15	9	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36044674	A	A	36044674	3	1	227	1	0	0	0	0	1	0	0	0	1149	1174	41	4	592	4	ATP4A	19	36044674	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2971588	36044674	23084309	555	172847											
MLL4	9757	broad.mit.edu	37	chr19	36210585	36210585	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caagctagtctgggcagcggGggaaacacacaagcaagact	13	10	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36210585	A	A	36210585	1	1	227	0	1	0	0	0	0	0	0	0	9716	1247	43	4		4	MLL4	19	36210585	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	165911	36210585	22918398	556	172848											
NPHS1	4868	broad.mit.edu	37	chr19	36326759	36326759	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaagcctattagattcatgGgaactggtatatgactgctt	9	6	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36326759	C	C	36326759	1	2	227	0	1	0	0	0	0	0	0	0	10677	1247	43	4		4	NPHS1	19	36326759	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	116174	36326759	22802224	557	172849											
NPHS1	4868	broad.mit.edu	37	chr19	36336695	36336695	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caggatcgtcacgttagttgGgggaactgggagacggggtt	18	6	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36336695	C	C	36336695	3	2	227	1	0	0	0	0	1	0	0	0	10677	1232	43	4	2160	4	NPHS1	19	36336695	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	9936	36336695	22792288	558	172850											
ALKBH6	84964	broad.mit.edu	37	chr19	36505076	36505076	+	5'Flank	DEL	C	-	-													ccagcactccccaaaactgaCcgtccaccagcgtcccctcc							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	36505076	-	-	36505076	6	5	227	0	1	1	0	1	0	0	0	0	531	521	18	0		0	ALKBH6	19	36505076	5'Flank	DEL	C	TCGA-91-6831-01A-11D-1855-08	168381	36505076	22623907	559	172851											
ZFP82	284406	broad.mit.edu	37	chr19	36883979	36883979	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcattccttacagtcataGggcttaacaccaatatgaat	6	11	1	1	rs61741561	byFrequency;by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36883979	T	T	36883979	2	4	227	1	0	0	0	0	0	0	0	1	17779	987	35	2		2	ZFP82	19	36883979	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	378903	36883979	22245004	560	172852											
ZNF780B	163131	broad.mit.edu	37	chr19	40556272	40556272	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaaattggtcaatcttccTcgggcttctcccctggaaaa	7	12	3	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40556272	A	A	40556272	1	1	227	0	1	0	0	0	0	0	0	0	18282	1566	54	5		5	ZNF780B	19	40556272	5'UTR	SNP	T	TCGA-91-6831-01A-11D-1855-08	3672293	40556272	18572711	561	172853											
AKT2	208	broad.mit.edu	37	chr19	40740980	40740980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggtgtgattgtgatggaCtgggcggtaaattcatcatc	16	5	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40740980	A	A	40740980	3	1	227	1	0	0	0	0	1	0	0	0	480	564	20	3	115	3	AKT2	19	40740980	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	184708	40740980	18388003	562	172854											
CYP2A7	1549	broad.mit.edu	37	chr19	41450773	41450773	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttaggtaagctggacccacAgtttctttcccagacaccag	8	13	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41450773	T	T	41450773	1	4	227	0	1	0	0	0	0	0	0	0	4196	203	7	5		5	CYP2A7	19	41450773	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08	709793	41450773	17678210	563	172855											
ARHGEF1	9138	broad.mit.edu	37	chr19	42398691	42398691	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcactgtctcattctctctCgtttcagttccagattttcg	5	13	5	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42398691	T	T	42398691	1	4	227	0	1	0	0	0	0	0	0	0	895	899	31	4		4	ARHGEF1	19	42398691	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	947918	42398691	16730292	564	172856											
ZNF229	7772	broad.mit.edu	37	chr19	44946727	44946727	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cctaaggtggtatttcgggaGagaaaagaaaacaacccacc	10	9	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44946727	T	T	44946727	1	4	227	0	1	0	0	0	0	0	0	0	17908	957	33	3		3	ZNF229	19	44946727	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	2548036	44946727	14182256	565	172857											
EMP3	2014	broad.mit.edu	37	chr19	48829985	48829985	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgatctcctgacctcaggtGatcctcccgcctcggcctcc	8	19	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48829985	C	C	48829985	1	2	227	0	1	0	0	0	0	0	0	0	5145	1305	45	4		4	EMP3	19	48829985	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3883258	48829985	10298998	566	172858											
POLD1	5424	broad.mit.edu	37	chr19	50902595	50902595	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggggaagaccatgactcCatgtactccacttccttccc	8	16	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50902595	A	A	50902595	1	1	227	0	1	0	0	0	0	0	0	0	12285	609	21	2		2	POLD1	19	50902595	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	2072610	50902595	8226388	567	172859											
SYT3	84258	broad.mit.edu	37	chr19	51128750	51128750	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ataggtggggttcagcgtgtTcttcttgatggaggttttcc	14	6	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51128750	A	A	51128750	3	1	227	1	0	0	0	0	1	0	0	0	15594	1783	62	5	310	5	SYT3	19	51128750	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	226155	51128750	8000233	568	172860											
SYT3	84258	broad.mit.edu	37	chr19	51135967	51135967	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgagcctcccttgtcccGccagggcacccagcacaact	9	19	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51135967	T	T	51135967	2	4	227	1	0	0	0	0	0	0	0	1	15594	1086	38	3		3	SYT3	19	51135967	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	7217	51135967	7993016	569	172861											
SIGLEC12	89858	broad.mit.edu	37	chr19	52000177	52000177	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttgcgtcctccatgcctGtatcccccacgcccactgct	7	19	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52000177	T	T	52000177	3	4	227	1	0	0	0	0	1	0	0	0	14421	1377	48	3	239	3	SIGLEC12	19	52000177	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	864210	52000177	7128806	570	172862											
ZNF613	79898	broad.mit.edu	37	chr19	52448120	52448120	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggccttctccaaaagGtccaggctcactgaacacca	10	13	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52448120	T	T	52448120	3	4	227	1	0	0	0	0	1	0	0	0	18165	1252	44	3	998	3	ZNF613	19	52448120	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	447943	52448120	6680863	571	172863											
ZNF350	59348	broad.mit.edu	37	chr19	52468138	52468138	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaacataaaataagacaTaattgatcacggaaggcaca	7	7	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52468138	C	C	52468138	3	2	227	1	0	0	0	0	1	0	0	0	17989	1406	49	5	34	5	ZNF350	19	52468138	Missense_Mutation	SNP	T	TCGA-91-6831-01A-11D-1855-08	20018	52468138	6660845	572	172864											
ZNF534	147658	broad.mit.edu	37	chr19	52934612	52934612	+	5'Flank	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtggctgtggcacaggaAgtgggtgtgttgattctaag	17	4	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	52934612	G	G	52934612	1	3	227	0	1	0	0	0	0	0	0	0	18100	87	3	5		5	ZNF534	19	52934612	5'Flank	SNP	A	TCGA-91-6831-01A-11D-1855-08	466474	52934612	6194371	573	172865											
ZNF28	7576	broad.mit.edu	37	chr19	53304727	53304727	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgcctttgatcatgttggCctgtactaccagtcaactct	7	12	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53304727	T	T	53304727	3	4	227	1	0	0	0	0	1	0	0	0	17939	739	26	4	1789	4	ZNF28	19	53304727	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	370115	53304727	5824256	574	172866											
CACNG7	59284	broad.mit.edu	37	chr19	54418841	54418841	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttccacttagccacttccTtgctgtgtggcctgggagga	11	11	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54418841	A	A	54418841	1	1	227	0	1	0	0	0	0	0	0	0	2588	1624	56	5		5	CACNG7	19	54418841	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	1114114	54418841	4710142	575	172867											
LILRA1	11024	broad.mit.edu	37	chr19	55107955	55107955	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctggagctcatggtctcAggtgagggccctgaccctgt	13	13	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55107955	G	G	55107955	2	3	227	1	0	0	0	0	0	0	0	1	8856	202	7	5		5	LILRA1	19	55107955	Silent	SNP	A	TCGA-91-6831-01A-11D-1855-08	689114	55107955	4021028	576	172868											
LILRB1	10859	broad.mit.edu	37	chr19	55143593	55143593	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgtgggccccgtgagccCgagtcgcaggtggtggtaca	16	13	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55143593	T	T	55143593	3	4	227	1	0	0	0	0	1	0	0	0	8862	652	23	4	580	4	LILRB1	19	55143593	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	35638	55143593	3985390	577	172869											
ZNF304	57343	broad.mit.edu	37	chr19	57868288	57868288	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcagaagctcccaccttGttcagcaccagagaattcac	7	14	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57868288	T	T	57868288	3	4	227	1	0	0	0	0	1	0	0	0	17959	1377	48	3	1061	3	ZNF304	19	57868288	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	2724695	57868288	1260695	578	172870											
CPXM1	56265	broad.mit.edu	37	chr20	2777788	2777788	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtccacagtgaaggaTgcaccctgcatccaagccct	11	13	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2777788	A	A	2777788	1	1	227	0	1	0	0	0	0	0	0	0	3869	1479	51	5		5	CPXM1	20	2777788	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08		2777788	60247732	579	172871											
CPXM1	56265	broad.mit.edu	37	chr20	2778833	2778833	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgccctgtgtgataacaccCgagaagcgggtggggtgccc	15	12	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2778833	A	A	2778833	2	1	227	1	0	0	0	0	0	0	0	1	3869	639	23	1		1	CPXM1	20	2778833	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	1045	2778833	60246687	580	172872											
HSPA12B	116835	broad.mit.edu	37	chr20	3719387	3719388	+	Intron	DNP	CC	TT	TT													aagaacccccaccattctgcCctgacccatcacccactcac							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	3719388	TT	TT	3719387	1	4	227	0	1	0	0	0	0	0	0	0	7474	638	22	4		4	HSPA12B	20	3719387	Intron	DNP	CC	TCGA-91-6831-01A-11D-1855-08	940554	3719387	59306133	581	172873											
MACROD2	140733	broad.mit.edu	37	chr20	14108521	14108521	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaagccaataaatgtttccCaactagatctttgaattggt	6	8	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14108521	T	T	14108521	1	4	227	0	1	0	0	0	0	0	0	0	9234	609	21	4		4	MACROD2	20	14108521	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	10389134	14108521	48916999	582	172874											
RALGAPA2	57186	broad.mit.edu	37	chr20	20563985	20563985	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gacacagtaggaatcattcaTgttctttggcagaacctgca	9	9	3	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20563985	C	C	20563985	1	2	227	0	1	0	0	0	0	0	0	0	13122	1479	51	5		5	RALGAPA2	20	20563985	Intron	SNP	T	TCGA-91-6831-01A-11D-1855-08	6455464	20563985	42461535	583	172875											
DNMT3B	1789	broad.mit.edu	37	chr20	31379350	31379350	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatggacaacattgtgataGacatggcacctgggacacac	11	9	0	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31379350	A	A	31379350	1	1	227	0	1	0	0	0	0	0	0	0	4717	957	33	4		4	DNMT3B	20	31379350	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	10815365	31379350	31646170	584	172876											
C20orf185	359710	broad.mit.edu	37	chr20	31660061	31660061	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctttatggttctgatgggGacactgaggccagagagaga	14	7	2	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31660061	A	A	31660061	1	1	227	0	1	0	0	0	0	0	0	0	2119	1189	41	4		4	C20orf185	20	31660061	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	280711	31660061	31365459	585	172877											
C20orf117	140710	broad.mit.edu	37	chr20	35467637	35467643	+	Frame_Shift_Del	DEL	GACCACG	-	-													gaccttgacatcctgctccaGaccacggataagctcgccgt					rs151235047	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	35467643	-	-	35467637	7	5	227	1	0	1	0	1	0	0	0	0	2105	933	33	0	4208	0	C20orf117	20	35467637	Frame_Shift_Del	DEL	GACCACG	TCGA-91-6831-01A-11D-1855-08	3807576	35467637	27557883	586	172878											
GHRH	2691	broad.mit.edu	37	chr20	35884948	35884948	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggcggggtggaggccaggcGagaggacagtcgtggctgca	22	8	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35884948	C	C	35884948	1	2	227	0	1	0	0	0	0	0	0	0	6436	1073	37	4		4	GHRH	20	35884948	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	417311	35884948	27140572	587	172879											
PTPRT	11122	broad.mit.edu	37	chr20	41400257	41400257	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gcaccacttccctattggtgGatggcagctcaggatgggca	13	11	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	41400257	C	C	41400257	1	2	227	0	1	0	0	0	0	0	0	0	12920	1189	41	4		4	PTPRT	20	41400257	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	5515309	41400257	21625263	588	172880											
ADA	100	broad.mit.edu	37	chr20	43249676	43249676	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caccagccttttaaactcctCttcagtaaagcccatgtccc	4	16	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43249676	T	T	43249676	3	4	227	1	0	0	0	0	1	0	0	0	230	922	32	4	145	4	ADA	20	43249676	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	1849419	43249676	19775844	589	172881											
ADNP	23394	broad.mit.edu	37	chr20	49511090	49511090	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agaattagaatgccacttcaGataggcagttaacagattcc	8	8	1	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49511090	A	A	49511090	1	1	227	0	1	0	0	0	0	0	0	0	323	957	33	4		4	ADNP	20	49511090	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	6261414	49511090	13514430	590	172882											
CDH4	1002	broad.mit.edu	37	chr20	60511762	60511762	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccggggctgagacaacgcgtCctgcaccctaactctgtgtc	11	15	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60511762	T	T	60511762	1	4	227	0	1	0	0	0	0	0	0	0	3142	870	30	4		4	CDH4	20	60511762	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	11000672	60511762	2513758	591	172883											
GATA5	140628	broad.mit.edu	37	chr20	61040522	61040522	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggcattccttgtggatccTggaagcgaagagggggtgtt	17	6	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61040522	A	A	61040522	5	1	227	1	0	0	0	0	0	0	1	0	6319	1594	55	5	289	5	GATA5	20	61040522	Splice_Site	SNP	T	TCGA-91-6831-01A-11D-1855-08	528760	61040522	1984998	592	172884											
KCNQ2	3785	broad.mit.edu	37	chr20	62078213	62078213	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gggggcagggaacgcgcgctCtcagacaggccgcagcaggg	19	12	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62078213	A	A	62078213	1	1	227	0	1	0	0	0	0	0	0	0	8153	928	32	3		3	KCNQ2	20	62078213	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	1037691	62078213	947307	593	172885											
TPTE	7179	broad.mit.edu	37	chr21	10935063	10935063	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ataagctatttcctagggggAacctaaaatggttattactt	8	6	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10935063	T	T	10935063	1	4	227	0	1	0	0	0	0	0	0	0	16554	261	9	5		5	TPTE	21	10935063	Intron	SNP	A	TCGA-91-6831-01A-11D-1855-08		10935063	37194832	594	172886											
BAGE2	85319	broad.mit.edu	37	chr21	11097607	11097608	+	Missense_Mutation	DNP	GC	AA	AA													aggggactcctccttcatcaGcctggcttggagcagctggg					rs4913758		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	11097608	AA	AA	11097607	3	1	227	1	0	0	0	0	1	0	0	0	1297	962	34	4	286	4	BAGE2	21	11097607	Missense_Mutation	DNP	GC	TCGA-91-6831-01A-11D-1855-08	162544	11097607	37032288	595	172887											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45994771	45994771	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgctgcgtgcccgtcccttCctgctgtgctcccacctcct	8	20	0	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45994771	A	A	45994771	3	1	227	1	0	0	0	0	1	0	0	0	8582	855	30	3	1138	3	KRTAP10-4	21	45994771	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	34897164	45994771	2135124	596	172888											
POFUT2	23275	broad.mit.edu	37	chr21	46703273	46703273	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgggggggcacctgcggCagggggagcagcctcagcag	21	10	1	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46703273	A	A	46703273	1	1	227	0	1	0	0	0	0	0	0	0	12279	725	25	3		3	POFUT2	21	46703273	Intron	SNP	C	TCGA-91-6831-01A-11D-1855-08	708502	46703273	1426622	597	172889											
CDC45	8318	broad.mit.edu	37	chr22	19471469	19471469	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaggaggatgaagagCattcaggaaatgacagtgat	14	3	1	6			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19471469	T	T	19471469	3	4	227	1	0	0	0	0	1	0	0	0	3111	710	25	4	445	4	CDC45	22	19471469	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08		19471469	31833097	598	172890											
HPS4	89781	broad.mit.edu	37	chr22	26859974	26859974	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcagtgagtgtagagattcAtcctcacgagccccatgcag	11	12	2	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26859974	T	T	26859974	3	4	227	1	0	0	0	0	1	0	0	0	7408	217	8	5	520	5	HPS4	22	26859974	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	7388505	26859974	24444592	599	172891											
RNF215	200312	broad.mit.edu	37	chr22	30776237	30776237	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcttgcaggtccaagggctGagggtgctggggctccctgg	18	10	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30776237	A	A	30776237	1	1	227	0	1	0	0	0	0	0	0	0	13590	1305	45	4		4	RNF215	22	30776237	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3916263	30776237	20528329	600	172892											
MPPED1	758	broad.mit.edu	37	chr22	43870629	43870629	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcaggcagcctgccctaCgagtacaagatcgtgatcgc	11	14	0	2	rs139800936	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	43870629	G	G	43870629	4	3	227	1	0	0	0	0	0	1	0	0	9835	547	19	4	430	4	MPPED1	22	43870629	Nonsense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	13094392	43870629	7433937	601	172893											
BEND2	139105	broad.mit.edu	37	chrX	18238753	18238753	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgactagccaatcctgccGcccctgaatggccacctaag	8	15	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18238753	A	A	18238753	1	1	227	0	1	0	0	0	0	0	0	0	1403	1102	38	4		4	BEND2	23	18238753	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08		18238753	137031807	602	172894											
GPR64	10149	broad.mit.edu	37	chrX	19031915	19031915	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccggagacatgggtttgggGcataggggaagagatcgttt	18	5	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19031915	C	C	19031915	3	2	227	1	0	0	0	0	1	0	0	0	6770	1203	42	4	2121	4	GPR64	23	19031915	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	793162	19031915	136238645	603	172895											
CNKSR2	22866	broad.mit.edu	37	chrX	21624935	21624935	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	acaaggaagaagcagatactCcatcaacaccaaaacaagat	6	10	1	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21624935	T	T	21624935	3	4	227	1	0	0	0	0	1	0	0	0	3639	855	30	4	2157	4	CNKSR2	23	21624935	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	2593020	21624935	133645625	604	172896											
DDX53	168400	broad.mit.edu	37	chrX	23019678	23019678	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcattacatggcaacagtGaacagagtgatcaagagcga	10	7	2	4			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23019678	T	T	23019678	4	4	227	1	0	0	0	0	0	1	0	0	4404	1291	45	3	1506	3	DDX53	23	23019678	Nonsense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	1394743	23019678	132250882	605	172897											
MAGEB4	4115	broad.mit.edu	37	chrX	30260394	30260394	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcctcatctgttttgaggGatactgcctccagctccctt	7	14	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30260394	A	A	30260394	3	1	227	1	0	0	0	0	1	0	0	0	9270	1174	41	4	144	4	MAGEB4	23	30260394	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	7240716	30260394	125010166	606	172898											
USP9X	8239	broad.mit.edu	37	chrX	41088852	41088852	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaaagaaagtggacctgGgcagtggaatggcttggaga	15	5	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41088852	T	T	41088852	3	4	227	1	0	0	0	0	1	0	0	0	17217	1241	43	2	7417	2	USP9X	23	41088852	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	10828458	41088852	114181708	607	172899											
WDR13	64743	broad.mit.edu	37	chrX	48460278	48460278	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccttgctctgtcctttgAtgcccctggccggctgctct	10	15	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48460278	G	G	48460278	3	3	227	1	0	0	0	0	1	0	0	0	17402	333	12	5	960	5	WDR13	23	48460278	Missense_Mutation	SNP	A	TCGA-91-6831-01A-11D-1855-08	7371426	48460278	106810282	608	172900											
SMC1A	8243	broad.mit.edu	37	chrX	53409448	53409448	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcactgctattgcgggaCagggccttatagatctcatc	12	10	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53409448	A	A	53409448	2	1	227	1	0	0	0	0	0	0	0	1	14895	465	17	3		3	SMC1A	23	53409448	Silent	SNP	C	TCGA-91-6831-01A-11D-1855-08	4949170	53409448	101861112	609	172901											
SPIN3	169981	broad.mit.edu	37	chrX	57020669	57020669	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaaatttgatgaagtacaCagagggttttgcttctacct	8	7	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	57020669	G	G	57020669	3	3	227	1	0	0	0	0	1	0	0	0	15173	478	17	4	68	4	SPIN3	23	57020669	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3611221	57020669	98249891	610	172902											
STARD8	9754	broad.mit.edu	37	chrX	67942347	67942347	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccagccctggctgagctGcgtcaggcccaagctgcagg	15	15	1	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67942347	T	T	67942347	2	4	227	1	0	0	0	0	0	0	0	1	15381	1306	46	3		3	STARD8	23	67942347	Silent	SNP	G	TCGA-91-6831-01A-11D-1855-08	10921678	67942347	87328213	611	172903											
TMEM35	59353	broad.mit.edu	37	chrX	100349972	100349972	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtgcaaagagtggaccTtccaggcagttgcgtccatg	14	9	0	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100349972	C	C	100349972	1	2	227	0	1	0	0	0	0	0	0	0	16280	1624	56	5		5	TMEM35	23	100349972	3'UTR	SNP	T	TCGA-91-6831-01A-11D-1855-08	32407625	100349972	54920588	612	172904											
DCX	1641	broad.mit.edu	37	chrX	110653618	110653618	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcaaagtgtccaaaatcAagttccatattttggtggaa	8	7	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	110653618	G	G	110653618	2	3	227	1	0	0	0	0	0	0	0	1	4351	117	5	5		5	DCX	23	110653618	Silent	SNP	A	TCGA-91-6831-01A-11D-1855-08	10303646	110653618	44616942	613	172905											
HTR2C	3358	broad.mit.edu	37	chrX	114134858	114134858	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	attgaaacaaacagttctgaGaccattcttccaccactgat	5	11	2	3			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114134858	A	A	114134858	1	1	227	0	1	0	0	0	0	0	0	0	7513	957	33	4		4	HTR2C	23	114134858	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08	3481240	114134858	41135702	614	172906											
LONRF3	79836	broad.mit.edu	37	chrX	118112341	118112341	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgctttatagcaatcggtCtcagatttatttcaccttgg	7	9	2	1			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118112341	G	G	118112341	3	3	227	1	0	0	0	0	1	0	0	0	8983	913	32	4	857	4	LONRF3	23	118112341	Missense_Mutation	SNP	C	TCGA-91-6831-01A-11D-1855-08	3977483	118112341	37158219	615	172907											
AKAP14	158798	broad.mit.edu	37	chrX	119053913	119053913	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgtaggtgaccaccaaGcattagttcacaggtaatga	9	8	1	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119053913	T	T	119053913	3	4	227	1	0	0	0	0	1	0	0	0	450	971	34	3	504	3	AKAP14	23	119053913	Missense_Mutation	SNP	G	TCGA-91-6831-01A-11D-1855-08	941572	119053913	36216647	616	172908											
ARHGAP36	158763	broad.mit.edu	37	chrX	130222789	130222789	+	3'UTR	DEL	G	-	-													cttctataaggtgccagacaGgggaaaagggtgggggtaca							TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	130222789	-	-	130222789	6	5	227	0	1	1	0	1	0	0	0	0	885	1015	35	0		0	ARHGAP36	23	130222789	3'UTR	DEL	G	TCGA-91-6831-01A-11D-1855-08	11168876	130222789	25047771	617	172909											
HCFC1	3054	broad.mit.edu	37	chrX	153214697	153214697	+	3'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacagcggctcgcgagggTgaagtgcgaatgctgggacg	18	8	0	2			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153214697	G	G	153214697	1	3	227	0	1	0	0	0	0	0	0	0	7057	1711	59	5		5	HCFC1	23	153214697	3'UTR	SNP	T	TCGA-91-6831-01A-11D-1855-08	22991908	153214697	2055863	618	172910											
USP9Y	8287	broad.mit.edu	37	chrY	14888554	14888554	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	tttcatttgtaaacaacctgGattatctgtatttgtccatt	5	7	2	0			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	14888554	C	C	14888554	1	2	227	0	1	0	0	0	0	0	0	0	17218	1189	41	4		4	USP9Y	24	14888554	Intron	SNP	G	TCGA-91-6831-01A-11D-1855-08		14888554	44485012	619	172911											
AJAP1	55966	broad.mit.edu	37	chr1	4715542	4715542	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acccggccggcgccgggtgcGtgtgggcgcgtgggtgccag	21	13	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4715542	A	A	4715542	1	1	228	0	1	0	0	0	0	0	0	0	438	1160	40	4		4	AJAP1	1	4715542	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08		4715542	244535079	1	172912											
AKR7A3	22977	broad.mit.edu	37	chr1	19609317	19609317	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaggggcccttcctctgCcgctgccaagttctgctcca	9	18	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	19609317	G	G	19609317	3	3	228	1	0	0	0	0	1	0	0	0	476	739	26	4	95	4	AKR7A3	1	19609317	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	14893775	19609317	229641304	2	172913											
ZMYM4	9202	broad.mit.edu	37	chr1	35884085	35884085	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaaacgaaatgaagatgatGaggttccagtgggggtggag	18	3	0	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35884085	T	T	35884085	4	4	228	1	0	0	0	0	0	1	0	0	17828	1291	45	3	4465	3	ZMYM4	1	35884085	Nonsense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	16274768	35884085	213366536	3	172914											
AKIRIN1	79647	broad.mit.edu	37	chr1	39466550	39466550	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcaggctggtctccacCtcagatgatccgcctgcctt	10	14	3	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39466550	G	G	39466550	1	3	228	0	1	0	0	0	0	0	0	0	461	696	24	4		4	AKIRIN1	1	39466550	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	3582465	39466550	209784071	4	172915											
NSUN4	387338	broad.mit.edu	37	chr1	46826602	46826603	+	Intron	DNP	AT	CA	CA													ataacccacacaagaatcttAtggctggagatctgcctaga							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	CA	46826603	CA	CA	46826602	1	2	228	0	1	0	0	0	0	0	0	0	10775	464	16	5		5	NSUN4	1	46826602	Intron	DNP	AT	TCGA-91-6835-01A-11D-1855-08	7360052	46826602	202424019	5	172916											
CC2D1B	200014	broad.mit.edu	37	chr1	52828382	52828382	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agcctcatccatgcccagcaGcatgtcctcagggccaaact	8	16	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52828382	C	C	52828382	3	2	228	1	0	0	0	0	1	0	0	0	2753	962	34	4	2558	4	CC2D1B	1	52828382	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	6001780	52828382	196422239	6	172917											
GLIS1	148979	broad.mit.edu	37	chr1	54059804	54059804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttgttgggcttctcgcCcgagtgcactcgcatgtgga	13	12	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54059804	A	A	54059804	3	1	228	1	0	0	0	0	1	0	0	0	6509	623	22	2	1122	2	GLIS1	1	54059804	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	1231422	54059804	195190817	7	172918											
PRMT6	55170	broad.mit.edu	37	chr1	107600088	107600088	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacgtgctggcccggccgCagcgctttgctcagctagag	15	13	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107600088	A	A	107600088	3	1	228	1	0	0	0	0	1	0	0	0	12646	711	25	3	753	3	PRMT6	1	107600088	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	53540284	107600088	141650533	8	172919											
EPS8L3	79574	broad.mit.edu	37	chr1	110294652	110294652	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaccacagtcagttcccGtgggttcctagcttcaaact	9	13	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110294652	A	A	110294652	3	1	228	1	0	0	0	0	1	0	0	0	5239	1144	40	4	402	4	EPS8L3	1	110294652	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	2694564	110294652	138955969	9	172920											
CD53	963	broad.mit.edu	37	chr1	111439234	111439234	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacagctttttttcactgtTgactttctaaccatcatcat	3	12	4	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111439234	A	A	111439234	1	1	228	0	1	0	0	0	0	0	0	0	3053	1827	63	5		5	CD53	1	111439234	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	1144582	111439234	137811387	10	172921											
FAM63A	55793	broad.mit.edu	37	chr1	150970049	150970049	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taacaggtgttctggacccgGcaaagcatgaggtggaaacc	13	9	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150970049	A	A	150970049	1	1	228	0	1	0	0	0	0	0	0	0	5647	1218	42	4		4	FAM63A	1	150970049	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	39530815	150970049	98280572	11	172922											
FLG	2312	broad.mit.edu	37	chr1	152275136	152275136	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgaaagtgaacttgcttcAttcttctattcttggattaa	6	6	4	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152275136	G	G	152275136	1	3	228	0	1	0	0	0	0	0	0	0	5979	232	8	5		5	FLG	1	152275136	3'UTR	SNP	A	TCGA-91-6835-01A-11D-1855-08	1305087	152275136	96975485	12	172923											
SPRR4	163778	broad.mit.edu	37	chr1	152944414	152944414	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcagcagtgcccaccccaGagggcccagcagcagcaagt	12	16	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152944414	T	T	152944414	3	4	228	1	0	0	0	0	1	0	0	0	15222	933	33	3	50	3	SPRR4	1	152944414	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	669278	152944414	96306207	13	172924											
SLC27A3	11000	broad.mit.edu	37	chr1	153748206	153748206	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcggaactggcccagcagcGcgccgcgcacacctttctca	11	18	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153748206	A	A	153748206	3	1	228	1	0	0	0	0	1	0	0	0	14641	1087	38	4	376	4	SLC27A3	1	153748206	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	803792	153748206	95502415	14	172925											
ZBTB7B	51043	broad.mit.edu	37	chr1	154989004	154989004	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctggcctcgacctctccaAtggccacctggacaccttcc	8	19	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	154989004	G	G	154989004	3	3	228	1	0	0	0	0	1	0	0	0	17680	101	4	5	1469	5	ZBTB7B	1	154989004	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	1240798	154989004	94261617	15	172926											
SSR2	6746	broad.mit.edu	37	chr1	155979464	155979464	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaggaaaacaaagacctTgcttagaagtctggattagg	11	5	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155979464	A	A	155979464	1	1	228	0	1	0	0	0	0	0	0	0	15309	1827	63	5		5	SSR2	1	155979464	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	990460	155979464	93271157	16	172927											
CD1E	913	broad.mit.edu	37	chr1	158325668	158325668	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtcctggccctggccgtcTgcagcttgtgtgccatgtct	12	14	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158325668	A	A	158325668	3	1	228	1	0	0	0	0	1	0	0	0	3008	1580	55	5	691	5	CD1E	1	158325668	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	2346204	158325668	90924953	17	172928											
ATP1A2	477	broad.mit.edu	37	chr1	160099209	160099209	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtctgcttgggttgccagGacagaggaagagagagggat	18	5	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160099209	A	A	160099209	1	1	228	0	1	0	0	0	0	0	0	0	1133	1189	41	4		4	ATP1A2	1	160099209	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	1773541	160099209	89151412	18	172929											
COPA	1314	broad.mit.edu	37	chr1	160302205	160302205	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagttttgcaccagagatGaccaggttgtcctctgaact	10	10	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160302205	A	A	160302205	1	1	228	0	1	0	0	0	0	0	0	0	3759	1305	45	4		4	COPA	1	160302205	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	202996	160302205	88948416	19	172930											
TMCO1	54499	broad.mit.edu	37	chr1	165712555	165712555	+	Intron	DEL	G	-	-													ctctaccatcaaatctaaaaGaaaaaaaaaaaaaaagaatt							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	165712555	-	-	165712555	6	5	228	0	1	1	0	1	0	0	0	0	16118	957	33	0		0	TMCO1	1	165712555	Intron	DEL	G	TCGA-91-6835-01A-11D-1855-08	5410350	165712555	83538066	20	172931											
TNR	7143	broad.mit.edu	37	chr1	175324639	175324639	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttccagcaaaatctcacCttgcggcttccatcggtgga	8	14	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175324639	A	A	175324639	3	1	228	1	0	0	0	0	1	0	0	0	16461	695	24	2	855	2	TNR	1	175324639	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	9612084	175324639	73925982	21	172932											
CEP350	9857	broad.mit.edu	37	chr1	180062865	180062865	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaaataacaatggaacatAtgatggtattgcatattttg	9	3	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	180062865	G	G	180062865	3	3	228	1	0	0	0	0	1	0	0	0	3284	449	16	5	7755	5	CEP350	1	180062865	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	4738226	180062865	69187756	22	172933											
FAM5C	339479	broad.mit.edu	37	chr1	190129791	190129791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttacattaccacaaatGtcttacctttgtcttggcag	6	10	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190129791	T	T	190129791	1	4	228	0	1	0	0	0	0	0	0	0	5645	1392	48	3		3	FAM5C	1	190129791	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	10066926	190129791	59120830	23	172934											
PHLDA3	23612	broad.mit.edu	37	chr1	201437488	201437488	+	3'UTR	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	cctgccttgacctcagcactGaggtggtgggtagcatgaag	14	10	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201437488	C	C	201437488	1	2	228	0	1	0	0	0	0	0	0	0	11945	1305	45	4		4	PHLDA3	1	201437488	3'UTR	SNP	G	TCGA-91-6835-01A-11D-1855-08	11307697	201437488	47813133	24	172935			1	138		2	2	14	G		9.784169e-05
PHLDA3	23612	broad.mit.edu	37	chr1	201437501	201437501	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcactgaggtggtgggtaGcatgaaggaaagatggtgcg	18	5	0	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	201437501	C	C	201437501	1	2	228	0	1	0	0	0	0	0	0	0	11945	986	34	4		4	PHLDA3	1	201437501	3'UTR	SNP	G	TCGA-91-6835-01A-11D-1855-08	13	201437501	47813120	25	172936			1	138		2	2	14	G		9.784169e-05
C4BPA	722	broad.mit.edu	37	chr1	207300236	207300236	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcctcctgcttgtgaGcccagtaagtatggactgtg	10	12	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	207300236	T	T	207300236	3	4	228	1	0	0	0	0	1	0	0	0	2272	962	34	3	907	3	C4BPA	1	207300236	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	5862735	207300236	41950385	26	172937											
USH2A	7399	broad.mit.edu	37	chr1	215953413	215953413	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taggaattaagcagcaatttAttgtaatagtgcactagcta	8	5	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	215953413	T	T	215953413	1	4	228	0	1	0	0	0	0	0	0	0	17162	464	16	5		5	USH2A	1	215953413	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	8653177	215953413	33297208	27	172938											
TMEM63A	9725	broad.mit.edu	37	chr1	226048664	226048664	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcacctttgcactgaaggctCtgacacttgcaggcattgaa	9	11	2	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	226048664	G	G	226048664	3	3	228	1	0	0	0	0	1	0	0	0	16313	912	32	4	1348	4	TMEM63A	1	226048664	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	10095251	226048664	23201957	28	172939											
PCNXL2	80003	broad.mit.edu	37	chr1	233296007	233296007	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctccttttttttttttttAaatgagggatatattactaa	4	6	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	233296007	T	T	233296007	1	4	228	0	1	0	0	0	0	0	0	0	11686	377	13	5		5	PCNXL2	1	233296007	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	7247343	233296007	15954614	29	172940											
LYST	1130	broad.mit.edu	37	chr1	235850271	235850271	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcttgtaaatctgtttGtgtaggctgtgatgacaccg	12	7	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	235850271	T	T	235850271	3	4	228	1	0	0	0	0	1	0	0	0	9216	1377	48	3	651	3	LYST	1	235850271	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	2554264	235850271	13400350	30	172941											
SCCPDH	51097	broad.mit.edu	37	chr1	246927524	246927524	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgacgtatttatgaaatgCgccctttgccttctccttca	6	11	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	246927524	T	T	246927524	1	4	228	0	1	0	0	0	0	0	0	0	13997	783	27	4		4	SCCPDH	1	246927524	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	11077253	246927524	2323097	31	172942											
OR2C3	81472	broad.mit.edu	37	chr1	247695755	247695755	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttctagtgagggtcgtGtggagaagcccaggaggaca	16	7	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247695755	T	T	247695755	3	4	228	1	0	0	0	0	1	0	0	0	11087	1377	48	3	907	3	OR2C3	1	247695755	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	768231	247695755	1554866	32	172943											
ID2	3398	broad.mit.edu	37	chr2	8823088	8823088	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcccctcggtgtgtgtgCgcgcgcgcgcatgtgttttt	14	12	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8823088	T	T	8823088	1	4	228	0	1	0	0	0	0	0	0	0	7560	783	27	4		4	ID2	2	8823088	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08		8823088	234376285	33	172944											
PUM2	23369	broad.mit.edu	37	chr2	20491805	20491805	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcattgcctggtacatctGgtatgcagtcttctggctta	10	9	4	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20491805	C	C	20491805	1	2	228	0	1	0	0	0	0	0	0	0	12934	1363	47	4		4	PUM2	2	20491805	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	11668717	20491805	222707568	34	172945											
XDH	7498	broad.mit.edu	37	chr2	31567641	31567641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaggcaggtgaagtgagGttttcaggaaccctgacctg	13	9	2	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31567641	T	T	31567641	1	4	228	0	1	0	0	0	0	0	0	0	17553	1276	44	3		3	XDH	2	31567641	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	11075836	31567641	211631732	35	172946											
BIRC6	57448	broad.mit.edu	37	chr2	32703581	32703581	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcaattttttttgatacCagactcatacatcattgttg	5	8	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32703581	A	A	32703581	1	1	228	0	1	0	0	0	0	0	0	0	1444	609	21	2		2	BIRC6	2	32703581	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1135940	32703581	210495792	36	172947											
B3GNT2	10678	broad.mit.edu	37	chr2	62449030	62449030	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tatttctagcttcagcatgtCtcaaacagtcacttacatag	5	10	4	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	62449030	G	G	62449030	1	3	228	0	1	0	0	0	0	0	0	0	1262	928	32	4		4	B3GNT2	2	62449030	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	29745449	62449030	180750343	37	172948											
DCTN1	1639	broad.mit.edu	37	chr2	74605276	74605276	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctccaacataggccaCagtgcctcggtggccttttc	11	13	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74605276	G	G	74605276	3	3	228	1	0	0	0	0	1	0	0	0	4339	478	17	4	3842	4	DCTN1	2	74605276	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	12156246	74605276	168594097	38	172949											
TTL	150465	broad.mit.edu	37	chr2	113260740	113260740	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaagtagtatcttactacAaatcaaacatataataaggt	5	5	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113260740	G	G	113260740	3	3	228	1	0	0	0	0	1	0	0	0	16847	130	5	5	875	5	TTL	2	113260740	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	38655464	113260740	129938633	39	172950											
IL1A	3552	broad.mit.edu	37	chr2	113540280	113540280	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcccatgagaattacaGtcatttgcttacctgattca	7	10	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113540280	A	A	113540280	1	1	228	0	1	0	0	0	0	0	0	0	7720	1044	36	4		4	IL1A	2	113540280	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	279540	113540280	129659093	40	172951											
CCNT2	905	broad.mit.edu	37	chr2	135676393	135676393	+	5'UTR	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagccaggaggggcggggggTgaatgaaggagcgggcggag	25	5	0	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135676393	G	G	135676393	1	3	228	0	1	0	0	0	0	0	0	0	2965	1710	59	5		5	CCNT2	2	135676393	5'UTR	SNP	T	TCGA-91-6835-01A-11D-1855-08	22136113	135676393	107522980	41	172952											
GPD2	2820	broad.mit.edu	37	chr2	157407025	157407025	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagtatacttcaccatgGgttaagttaatagatgaatt	8	5	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157407025	T	T	157407025	1	4	228	0	1	0	0	0	0	0	0	0	6671	1247	43	2		2	GPD2	2	157407025	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	21730632	157407025	85792348	42	172953											
LY75	4065	broad.mit.edu	37	chr2	160706478	160706478	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatgaagagtattggttttTaaaaaaacttacattttctg	7	3	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160706478	A	A	160706478	1	1	228	0	1	0	0	0	0	0	0	0	9187	1769	61	5		5	LY75	2	160706478	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	3299453	160706478	82492895	43	172954											
RBMS1	5937	broad.mit.edu	37	chr2	161223815	161223815	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgctgagctgatcccatcCtgagttgctactgctgctac	9	12	0	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161223815	A	A	161223815	4	1	228	1	0	0	0	0	0	1	0	0	13256	690	24	2	1105	2	RBMS1	2	161223815	Nonsense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	517337	161223815	81975558	44	172955											
DPP4	1803	broad.mit.edu	37	chr2	162865053	162865053	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acactccgtatctctttgtaCctggcagcaattacatacca	5	13	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	162865053	A	A	162865053	1	1	228	0	1	0	0	0	0	0	0	0	4769	522	18	3		3	DPP4	2	162865053	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1641238	162865053	80334320	45	172956											
SCN1A	6323	broad.mit.edu	37	chr2	166898930	166898930	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttcagtttcagtggttGttccctgtaaaaaaaaatgc	7	7	3	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166898930	T	T	166898930	3	4	228	1	0	0	0	0	1	0	0	0	14027	1377	48	3	4041	3	SCN1A	2	166898930	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	4033877	166898930	76300443	46	172957											
ITGA6	3655	broad.mit.edu	37	chr2	173344444	173344444	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctccgccagaaaacagcGtgtggggcgcctagtgggat	15	11	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173344444	A	A	173344444	2	1	228	1	0	0	0	0	0	0	0	1	7950	1132	40	4		4	ITGA6	2	173344444	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	6445514	173344444	69854929	47	172958											
ZC3H15	55854	broad.mit.edu	37	chr2	187368746	187368746	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaccgcttgtgaataatAttgtctctataggtgtgcaa	9	8	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	187368746	G	G	187368746	1	3	228	0	1	0	0	0	0	0	0	0	17693	464	16	5		5	ZC3H15	2	187368746	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	14024302	187368746	55830627	48	172959											
ALS2CR8	79800	broad.mit.edu	37	chr2	203820379	203820379	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaactgcatatttatatatAttcctctcctatcccagaat	3	10	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203820379	G	G	203820379	1	3	228	0	1	0	0	0	0	0	0	0	555	464	16	5		5	ALS2CR8	2	203820379	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	16451633	203820379	39378994	49	172960											
MYL1	4632	broad.mit.edu	37	chr2	211179668	211179668	+	Frame_Shift_Del	DEL	G	-	-													aggtcaattttttcttctttGggtttggctggggcaggggc							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	211179668	-	-	211179668	7	5	228	1	0	1	0	1	0	0	0	0	10137	1335	47	0	545	0	MYL1	2	211179668	Frame_Shift_Del	DEL	G	TCGA-91-6835-01A-11D-1855-08	7359289	211179668	32019705	50	172961											
XRCC5	7520	broad.mit.edu	37	chr2	217021211	217021211	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacataagcctcatcgatgcTgacgcattcaatcacagcaa	6	12	3	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	217021211	C	C	217021211	1	2	228	0	1	0	0	0	0	0	0	0	17583	1595	55	5		5	XRCC5	2	217021211	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	5841543	217021211	26178162	51	172962											
RFTN1	23180	broad.mit.edu	37	chr3	16411656	16411656	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtggtcgctcatgtgctcTaaccagttggcgtccaaacc	10	12	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	16411656	C	C	16411656	2	2	228	1	0	0	0	0	0	0	0	1	13366	1519	53	5		5	RFTN1	3	16411656	Silent	SNP	T	TCGA-91-6835-01A-11D-1855-08		16411656	181610774	52	172963											
USP4	7375	broad.mit.edu	37	chr3	49335338	49335338	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaggcatgatgtggtttaaAccttcatccatttggaaaat	9	7	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49335338	T	T	49335338	2	4	228	1	0	0	0	0	0	0	0	1	17198	30	2	5		5	USP4	3	49335338	Silent	SNP	A	TCGA-91-6835-01A-11D-1855-08	32923682	49335338	148687092	53	172964											
DNAH1	25981	broad.mit.edu	37	chr3	52416426	52416426	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggtcctgctcaaggcGggcctacagaacctacccat	10	13	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52416426	A	A	52416426	2	1	228	1	0	0	0	0	0	0	0	1	4637	1103	39	4		4	DNAH1	3	52416426	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	3081088	52416426	145606004	54	172965											
EPHA6	285220	broad.mit.edu	37	chr3	96533506	96533506	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgcgaggagctccccGgcgccgcaggcagcgtcctc	14	19	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96533506	T	T	96533506	2	4	228	1	0	0	0	0	0	0	0	1	5213	1103	39	1		1	EPHA6	3	96533506	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	44117080	96533506	101488924	55	172966											
HGD	3081	broad.mit.edu	37	chr3	120400769	120400769	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctttcctttatcacctttCccttgttcttcagctccagc	3	15	4	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120400769	T	T	120400769	1	4	228	0	1	0	0	0	0	0	0	0	7151	870	30	4		4	HGD	3	120400769	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	23867263	120400769	77621661	56	172967											
CCDC14	64770	broad.mit.edu	37	chr3	123633720	123633720	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaagtcttgttcatcaCgagaagtgaacgttgaaaac	9	7	4	4	rs148584055	by1000genomes	TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123633720	A	A	123633720	3	1	228	1	0	0	0	0	1	0	0	0	2799	536	19	3	97	3	CCDC14	3	123633720	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	3232951	123633720	74388710	57	172968											
PLS1	5357	broad.mit.edu	37	chr3	142430475	142430475	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaacaatgctaagtaagccTttatggtttatattacaata	6	5	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142430475	G	G	142430475	1	3	228	0	1	0	0	0	0	0	0	0	12202	1624	56	5		5	PLS1	3	142430475	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	18796755	142430475	55591955	58	172969											
SHOX2	6474	broad.mit.edu	37	chr3	157817958	157817958	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctattgtcatttttgaggttCctttttttctgtcattgtaa	6	6	3	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157817958	A	A	157817958	1	1	228	0	1	0	0	0	0	0	0	0	14402	870	30	3		3	SHOX2	3	157817958	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	15387483	157817958	40204472	59	172970											
TCTEX1D2	255758	broad.mit.edu	37	chr3	196022837	196022837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttgatttgcggtgcccaCgttcttagaaagggaaaaga	12	6	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196022837	A	A	196022837	1	1	228	0	1	0	0	0	0	0	0	0	15842	551	19	3		3	TCTEX1D2	3	196022837	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	38204879	196022837	1999593	60	172971											
KIAA0226	9711	broad.mit.edu	37	chr3	197401799	197401799	+	3'UTR	DEL	G	-	-													taaaaaaaaaaaaaaaaaaaGaagccccaggtggggcgagt							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	197401799	-	-	197401799	6	5	228	0	1	1	0	1	0	0	0	0	8232	957	33	0		0	KIAA0226	3	197401799	3'UTR	DEL	G	TCGA-91-6835-01A-11D-1855-08	1378962	197401799	620631	61	172972											
DGKQ	1609	broad.mit.edu	37	chr4	955681	955681	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaccccgccttaggcagcCtccgggttccggcccctctg	10	20	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	955681	A	A	955681	1	1	228	0	1	0	0	0	0	0	0	0	4513	696	24	2		2	DGKQ	4	955681	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08		955681	190198595	62	172973											
HTRA3	94031	broad.mit.edu	37	chr4	8307713	8307713	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaggcggcatccaagaTggtgacatcatcgtcaaggt	14	9	2	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8307713	C	C	8307713	2	2	228	1	0	0	0	0	0	0	0	1	7525	1461	51	5		5	HTRA3	4	8307713	Silent	SNP	T	TCGA-91-6835-01A-11D-1855-08	7352032	8307713	182846563	63	172974											
DEFB131	644414	broad.mit.edu	37	chr4	9446340	9446340	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	aagacagaaacttttttattCcaaagttctaaaaatataag	4	5	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9446340	G	G	9446340	1	3	228	0	1	0	0	0	0	0	0	0	4456	870	30	4		4	DEFB131	4	9446340	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1138627	9446340	181707936	64	172975											
LIMCH1	22998	broad.mit.edu	37	chr4	41649023	41649023	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accatacaaaagaaaaatgtGttgacatttacagctgtgaa	7	6	0	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41649023	T	T	41649023	1	4	228	0	1	0	0	0	0	0	0	0	8869	1392	48	3		3	LIMCH1	4	41649023	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	32202683	41649023	149505253	65	172976											
YTHDC1	91746	broad.mit.edu	37	chr4	69184658	69184658	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ataattaaaccttccttaccActcgtttcaattctttccat	1	12	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	69184658	C	C	69184658	1	2	228	0	1	0	0	0	0	0	0	0	17623	174	6	5		5	YTHDC1	4	69184658	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	27535635	69184658	121969618	66	172977											
ENAM	10117	broad.mit.edu	37	chr4	71510435	71510435	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaatcctaacacattggttGagttagctactgaggaacaa	8	7	0	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71510435	C	C	71510435	3	2	228	1	0	0	0	0	1	0	0	0	5154	1291	45	4	3322	4	ENAM	4	71510435	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	2325777	71510435	119643841	67	172978											
PRKG2	5593	broad.mit.edu	37	chr4	82092980	82092980	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcaagcagaattttaaaaAacacacacacaaataatcga	3	8	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	82092980	C	C	82092980	1	2	228	0	1	0	0	0	0	0	0	0	12629	29	1	5		5	PRKG2	4	82092980	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	10582545	82092980	109061296	68	172979											
UBE2D3	7323	broad.mit.edu	37	chr4	103718683	103718683	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taatactttaaatggaagggAaagatttccattttatcatc	6	5	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	103718683	G	G	103718683	1	3	228	0	1	0	0	0	0	0	0	0	16976	261	9	5		5	UBE2D3	4	103718683	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	21625703	103718683	87435593	69	172980											
TBCK	93627	broad.mit.edu	37	chr4	106967751	106967751	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atttgaggagatgggatggtGaggaggcctgttggctttat	17	3	0	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106967751	A	A	106967751	2	1	228	1	0	0	0	0	0	0	0	1	15758	1277	45	4		4	TBCK	4	106967751	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	3249068	106967751	84186525	70	172981											
LRIT3	345193	broad.mit.edu	37	chr4	110789173	110789173	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gttaacatcatgtgttgtgtGatttgaaattagctagttaa	9	3	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110789173	A	A	110789173	1	1	228	0	1	0	0	0	0	0	0	0	9036	1305	45	4		4	LRIT3	4	110789173	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	3821422	110789173	80365103	71	172982											
EGF	1950	broad.mit.edu	37	chr4	110929469	110929470	+	Intron	DEL	CA	-	-													aatgaaaagtctcatttaacCacacacacacacacaaacaa							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	110929470	-	-	110929469	6	5	228	0	1	1	0	1	0	0	0	0	5002	609	21	0		0	EGF	4	110929469	Intron	DEL	CA	TCGA-91-6835-01A-11D-1855-08	140296	110929469	80224807	72	172983											
C4orf21	55345	broad.mit.edu	37	chr4	113530510	113530510	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagccaccatgcccaggggCtaatttatattttaaataac	7	9	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113530510	A	A	113530510	1	1	228	0	1	0	0	0	0	0	0	0	2277	812	28	3		3	C4orf21	4	113530510	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	2601041	113530510	77623766	73	172984											
RXFP1	59350	broad.mit.edu	37	chr4	159572994	159572994	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tatactctgaccacaagaccAtttaaagaaatgattcatcg	5	9	2	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159572994	T	T	159572994	2	4	228	1	0	0	0	0	0	0	0	1	13870	204	8	5		5	RXFP1	4	159572994	Silent	SNP	A	TCGA-91-6835-01A-11D-1855-08	46042484	159572994	31581282	74	172985											
CASP3	836	broad.mit.edu	37	chr4	185552921	185552921	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	cactcagttagacattacctGaataatgaaaagtttgggtt	8	6	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185552921	A	A	185552921	4	1	228	1	0	0	0	0	0	1	0	0	2698	1299	45	4	364	4	CASP3	4	185552921	Nonsense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	25979927	185552921	5601355	75	172986											
PDLIM3	27295	broad.mit.edu	37	chr4	186435330	186435330	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcgcaatgagaaaagccActccaaacatctaccagtta	6	12	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186435330	T	T	186435330	1	4	228	0	1	0	0	0	0	0	0	0	11775	174	6	5		5	PDLIM3	4	186435330	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	882409	186435330	4718946	76	172987											
CDH10	1008	broad.mit.edu	37	chr5	24488011	24488011	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcattaatgaaatcccggaCgtccgtgttatctggagctg	10	9	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24488011	T	T	24488011	3	4	228	1	0	0	0	0	1	0	0	0	3126	536	19	4	242	4	CDH10	5	24488011	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08		24488011	156427249	77	172988											
CDH6	1004	broad.mit.edu	37	chr5	31316327	31316327	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgacagataatccaaagcAaagtagtcgagtacctctat	8	8	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	31316327	G	G	31316327	3	3	228	1	0	0	0	0	1	0	0	0	3144	130	5	5	1433	5	CDH6	5	31316327	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	6828316	31316327	149598933	78	172989											
RNASEN	29102	broad.mit.edu	37	chr5	31511112	31511112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagctataatcgcaaggGtctcaggctagttagtgact	11	7	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31511112	T	T	31511112	1	4	228	0	1	0	0	0	0	0	0	0	13528	1276	44	3		3	RNASEN	5	31511112	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	194785	31511112	149404148	79	172990											
C9	735	broad.mit.edu	37	chr5	39285357	39285357	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tagagaaaacaaataagtatCaaatcttaatcatcaatagg	5	5	4	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39285357	G	G	39285357	1	3	228	0	1	0	0	0	0	0	0	0	2469	841	29	4		4	C9	5	39285357	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	7774245	39285357	141629903	80	172991											
FAM172A	83989	broad.mit.edu	37	chr5	93018658	93018658	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgggaagagaaccacctTtttctatacttgcttgcatt	7	9	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93018658	G	G	93018658	1	3	228	0	1	0	0	0	0	0	0	0	5537	1856	64	5		5	FAM172A	5	93018658	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	53733301	93018658	87896602	81	172992											
PCDHGA8	9708	broad.mit.edu	37	chr5	140772817	140772817	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaaaaattaacgaaatcgCggttcctggagcacgttatc	9	8	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140772817	T	T	140772817	3	4	228	1	0	0	0	0	1	0	0	0	11654	768	27	4	439	4	PCDHGA8	5	140772817	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	47754159	140772817	40142443	82	172993											
KIF4B	285643	broad.mit.edu	37	chr5	154396603	154396603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagatggtgatggtgatGgcgacagtgatgagggggat	19	2	0	6			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154396603	T	T	154396603	3	4	228	1	0	0	0	0	1	0	0	0	8374	1348	47	2	3186	2	KIF4B	5	154396603	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	13623786	154396603	26518657	83	172994											
SGCD	6444	broad.mit.edu	37	chr5	155771452	155771452	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttattttttttctcttctCtcagcggtttaatgtgagtg	7	7	3	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155771452	T	T	155771452	1	4	228	0	1	0	0	0	0	0	0	0	14314	928	32	4		4	SGCD	5	155771452	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1374849	155771452	25143808	84	172995											
HIVEP1	3096	broad.mit.edu	37	chr6	12125124	12125124	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcagaatgctttgccaaAcccagagaaggaatttctat	7	9	3	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12125124	C	C	12125124	3	2	228	1	0	0	0	0	1	0	0	0	7253	43	2	5	5106	5	HIVEP1	6	12125124	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08		12125124	158989943	85	172996											
HLA-G	3135	broad.mit.edu	37	chr6	29896309	29896309	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccttggagctgtagtcactgGagctgtggtttctgctgtga	14	8	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29896309	C	C	29896309	1	2	228	0	1	0	0	0	0	0	0	0	7279	1189	41	4		4	HLA-G	6	29896309	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	17771185	29896309	141218758	86	172997											
RGL2	5863	broad.mit.edu	37	chr6	33260318	33260318	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagccttgtcctggcttgTcacctggcagaacaggagac	13	11	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33260318	C	C	33260318	3	2	228	1	0	0	0	0	1	0	0	0	13385	1667	58	5	330	5	RGL2	6	33260318	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	3364009	33260318	137854749	87	172998											
DST	667	broad.mit.edu	37	chr6	56504285	56504285	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctagctatgttggtgtttCtctcactccagtcataagca	7	11	3	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	56504285	G	G	56504285	3	3	228	1	0	0	0	0	1	0	0	0	4823	913	32	4	19256	4	DST	6	56504285	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	23243967	56504285	114610782	88	172999											
COL19A1	1310	broad.mit.edu	37	chr6	70840125	70840125	+	Intron	DEL	T	-	-													aaggagacaaggtaatcagaTtttttttttttagatggagt							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	70840125	-	-	70840125	6	5	228	0	1	1	0	1	0	0	0	0	3708	1508	52	0		0	COL19A1	6	70840125	Intron	DEL	T	TCGA-91-6835-01A-11D-1855-08	14335840	70840125	100274942	89	173000											
LCA5	167691	broad.mit.edu	37	chr6	80198869	80198869	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtaacaaatttttcttctCtttccataattgggtttaga	5	7	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	80198869	G	G	80198869	3	3	228	1	0	0	0	0	1	0	0	0	8728	913	32	4	938	4	LCA5	6	80198869	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	9358744	80198869	90916198	90	173001											
MDN1	23195	broad.mit.edu	37	chr6	90381976	90381976	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcctctccaacagctcGgagatggcagaaattatttt	8	10	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90381976	T	T	90381976	2	4	228	1	0	0	0	0	0	0	0	1	9508	1103	39	1		1	MDN1	6	90381976	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	10183107	90381976	80733091	91	173002											
SMPD2	6610	broad.mit.edu	37	chr6	109764084	109764084	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tatcttgaaactcgggacttCaaggtgaggacttgcctgtt	11	8	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109764084	T	T	109764084	2	4	228	1	0	0	0	0	0	0	0	1	14919	825	29	4		4	SMPD2	6	109764084	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	19382108	109764084	61350983	92	173003											
AKAP12	9590	broad.mit.edu	37	chr6	151673899	151673899	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agttctggaagagaaatcctCtgaaaaaaatgaagactttg	9	5	2	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151673899	T	T	151673899	3	4	228	1	0	0	0	0	1	0	0	0	448	913	32	4	4412	4	AKAP12	6	151673899	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	41909815	151673899	19441168	93	173004											
C6orf118	168090	broad.mit.edu	37	chr6	165712880	165712880	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccactgctcatgaaataTgaagctatggataagcaggc	9	8	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	165712880	C	C	165712880	1	2	228	0	1	0	0	0	0	0	0	0	2346	1479	51	5		5	C6orf118	6	165712880	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	14038981	165712880	5402187	94	173005											
THSD7A	221981	broad.mit.edu	37	chr7	11464415	11464415	+	Nonsense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagggctctgtgacccatagGtactggttgcagtcactgtg	13	10	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	11464415	C	C	11464415	4	2	228	1	0	0	0	0	0	1	0	0	16002	1256	44	4	1734	4	THSD7A	7	11464415	Nonsense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08		11464415	147674248	95	173006											
ANKMY2	57037	broad.mit.edu	37	chr7	16644281	16644281	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttacagaatattaaaaCtcaatcatcagcttggctgc	5	10	4	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16644281	A	A	16644281	1	1	228	0	1	0	0	0	0	0	0	0	635	580	20	3		3	ANKMY2	7	16644281	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	5179866	16644281	142494382	96	173007											
PRPS1L1	221823	broad.mit.edu	37	chr7	18066750	18066750	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgtctgccatgtcatctAcaaggatagccacacgatca	8	11	4	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	18066750	G	G	18066750	3	3	228	1	0	0	0	0	1	0	0	0	12685	391	14	5	304	5	PRPS1L1	7	18066750	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	1422469	18066750	141071913	97	173008											
HDAC9	9734	broad.mit.edu	37	chr7	18875256	18875256	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttatttgtatctttcagGtaattgcattgcatgattac	6	6	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18875256	T	T	18875256	1	4	228	0	1	0	0	0	0	0	0	0	7081	1261	44	3		3	HDAC9	7	18875256	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	808506	18875256	140263407	98	173009											
MACC1	346389	broad.mit.edu	37	chr7	20193768	20193768	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgattacattagtgttaCttggtctgcaacttttcact	7	7	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20193768	T	T	20193768	1	4	228	0	1	0	0	0	0	0	0	0	9231	580	20	4		4	MACC1	7	20193768	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1318512	20193768	138944895	99	173010											
FKBP9	11328	broad.mit.edu	37	chr7	33044805	33044805	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttctcagagtacattcacGcccaggtggcatctggcaaa	10	11	3	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33044805	A	A	33044805	3	1	228	1	0	0	0	0	1	0	0	0	5972	1087	38	4	1593	4	FKBP9	7	33044805	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	12851037	33044805	126093858	100	173011											
POLD2	5425	broad.mit.edu	37	chr7	44157303	44157303	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	accagctcgtcatctgggtgTatgtatttactccgaggagg	12	9	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44157303	A	A	44157303	2	1	228	1	0	0	0	0	0	0	0	1	12286	1628	57	5		5	POLD2	7	44157303	Silent	SNP	T	TCGA-91-6835-01A-11D-1855-08	11112498	44157303	114981360	101	173012											
EGFR	1956	broad.mit.edu	37	chr7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatcacagattttgggcTggccaaactgctgggtgcgg	14	9	1	2	rs121434568		TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55259515	G	G	55259515	3	3	228	1	0	0	0	0	1	0	0	0	5007	1580	55	5	2919	5	EGFR	7	55259515	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	11102212	55259515	103879148	102	173013											
ZNF735	730291	broad.mit.edu	37	chr7	63679627	63679627	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaacaattttatatatttGatttgtacagtatatttatc	4	3	0	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63679627	C	C	63679627	1	2	228	0	1	0	0	0	0	0	0	0	18253	1305	45	4		4	ZNF735	7	63679627	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	8420112	63679627	95459036	103	173014											
TAC1	6863	broad.mit.edu	37	chr7	97362112	97362112	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggagctgtcaccttcccaCgcaacagcaccctagttaac	8	16	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	97362112	G	G	97362112	1	3	228	0	1	0	0	0	0	0	0	0	15617	551	19	4		4	TAC1	7	97362112	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	33682485	97362112	61776551	104	173015											
ZAN	7455	broad.mit.edu	37	chr7	100364630	100364630	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactccatcttcttctccaCaggtgccgccacctgcacag	7	17	3	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100364630	A	A	100364630	1	1	228	0	1	0	0	0	0	0	0	0	17640	493	17	3		3	ZAN	7	100364630	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	3002518	100364630	58774033	105	173016											
LAMB1	3912	broad.mit.edu	37	chr7	107600230	107600230	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcactggcactggcctccGttgggatcacacacggaact	12	14	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107600230	A	A	107600230	2	1	228	1	0	0	0	0	0	0	0	1	8682	1136	40	4		4	LAMB1	7	107600230	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	7235600	107600230	51538433	106	173017											
UBN2	254048	broad.mit.edu	37	chr7	138943367	138943367	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccaaaagcacaagccacCcaaggtgagtttatcaaaca	6	12	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138943367	T	T	138943367	3	4	228	1	0	0	0	0	1	0	0	0	17019	623	22	4	811	4	UBN2	7	138943367	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	31343137	138943367	20195296	107	173018											
DLC1	10395	broad.mit.edu	37	chr8	13251147	13251148	+	Missense_Mutation	DNP	CG	AA	AA													tgtcagaagacaaatttactCgtgtctgatttactgaaatg							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	13251148	AA	AA	13251147	3	1	228	1	0	0	0	0	1	0	0	0	4590	884	31	3	3502	3	DLC1	8	13251147	Missense_Mutation	DNP	CG	TCGA-91-6835-01A-11D-1855-08		13251147	133112875	108	173019											
PPAPDC1B	84513	broad.mit.edu	37	chr8	38122505	38122505	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtattttaagagttgcttctCgccgggcacggtgactcacg	12	10	2	2	rs72644712	by1000genomes	TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38122505	A	A	38122505	1	1	228	0	1	0	0	0	0	0	0	0	12390	899	31	3		3	PPAPDC1B	8	38122505	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	24871358	38122505	108241517	109	173020											
PXDNL	137902	broad.mit.edu	37	chr8	52412248	52412248	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaggacatctaaagggTcaacacttacagtcgctcta	8	10	3	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	52412248	C	C	52412248	1	2	228	0	1	0	0	0	0	0	0	0	12956	1682	58	5		5	PXDNL	8	52412248	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	14289743	52412248	93951774	110	173021											
CLVS1	157807	broad.mit.edu	37	chr8	62289213	62289213	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctgtcattggaagtcCtaatcgaagatccggagctt	10	10	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62289213	T	T	62289213	2	4	228	1	0	0	0	0	0	0	0	1	3603	680	24	4		4	CLVS1	8	62289213	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	9876965	62289213	84074809	111	173022											
NCALD	83988	broad.mit.edu	37	chr8	102859473	102859473	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttcttcttctttttttttTccccaagtcaggtcagacag	5	12	5	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102859473	C	C	102859473	1	2	228	0	1	0	0	0	0	0	0	0	10296	1798	62	5		5	NCALD	8	102859473	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	40570260	102859473	43504549	112	173023											
CSMD3	114788	broad.mit.edu	37	chr8	113585738	113585738	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaatacttactggtatacAcaagttgaaagccttcatct	5	8	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113585738	G	G	113585738	3	3	228	1	0	0	0	0	1	0	0	0	3980	159	6	5	7281	5	CSMD3	8	113585738	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	10726265	113585738	32778284	113	173024											
KLHL38	340359	broad.mit.edu	37	chr8	124664241	124664241	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggctctgccattggccgGtctgtttgctgtacagtagg	13	10	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124664241	T	T	124664241	3	4	228	1	0	0	0	0	1	0	0	0	8461	1261	44	3	831	3	KLHL38	8	124664241	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	11078503	124664241	21699781	114	173025											
ARHGAP39	80728	broad.mit.edu	37	chr8	145770790	145770790	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcggtggtctgccggcaCagctggatgtagagctcgtc	14	11	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145770790	A	A	145770790	2	1	228	1	0	0	0	0	0	0	0	1	886	465	17	3		3	ARHGAP39	8	145770790	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	21106549	145770790	593232	115	173026											
STOML2	30968	broad.mit.edu	37	chr9	35102814	35102814	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	agcgcggccagaagccagtaGagagccctgaaggaaagaag	15	9	0	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35102814	A	A	35102814	2	1	228	1	0	0	0	0	0	0	0	1	15432	933	33	4		4	STOML2	9	35102814	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08		35102814	106110617	116	173027											
RABEPK	10244	broad.mit.edu	37	chr9	127969979	127969979	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atccaaacagaagcttctcaGacgtgcacaccatggatctg	8	12	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127969979	T	T	127969979	3	4	228	1	0	0	0	0	1	0	0	0	13071	942	33	3	196	3	RABEPK	9	127969979	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	92867165	127969979	13243452	117	173028											
SETX	23064	broad.mit.edu	37	chr9	135205442	135205442	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaagatatcattgctgTtcctttggagcaatttccag	9	8	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135205442	G	G	135205442	3	3	228	1	0	0	0	0	1	0	0	0	14254	1725	60	5	6558	5	SETX	9	135205442	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	7235463	135205442	6007989	118	173029											
AKR1C1	1645	broad.mit.edu	37	chr10	5014469	5014469	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agacattgttctggttgcctAtagtgctctgggatcccacc	10	11	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	5014469	G	G	5014469	3	3	228	1	0	0	0	0	1	0	0	0	469	449	16	5	669	5	AKR1C1	10	5014469	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08		5014469	130520278	119	173030											
DNAJC1	64215	broad.mit.edu	37	chr10	22217404	22217404	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagcatgaaactataacaTcttaattcaaaagcagaaat	5	6	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22217404	C	C	22217404	1	2	228	0	1	0	0	0	0	0	0	0	4668	1450	50	5		5	DNAJC1	10	22217404	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	17202935	22217404	113317343	120	173031											
SH3PXD2A	9644	broad.mit.edu	37	chr10	105363225	105363226	+	Missense_Mutation	DNP	TC	AA	AA													gtggggctgggcaggccgccTctcccctgaggctctgtcct							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	105363226	AA	AA	105363225	3	1	228	1	0	0	0	0	1	0	0	0	14369	1550	54	5	1655	5	SH3PXD2A	10	105363225	Missense_Mutation	DNP	TC	TCGA-91-6835-01A-11D-1855-08	83145821	105363225	30171522	121	173032											
KCNK18	338567	broad.mit.edu	37	chr10	118969399	118969399	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgcccccacaagccatggaGaggagtaactcgtgtcccga	11	14	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969399	A	A	118969399	2	1	228	1	0	0	0	0	0	0	0	1	8135	933	33	4		4	KCNK18	10	118969399	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	13606174	118969399	16565348	122	173033											
TNNT3	7140	broad.mit.edu	37	chr11	1944415	1944415	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatcagctgcatcccatgGgtggcttctgagtgaccccc	10	14	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1944415	A	A	1944415	1	1	228	0	1	0	0	0	0	0	0	0	16455	1247	43	4		4	TNNT3	11	1944415	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08		1944415	133062101	123	173034											
PPFIBP2	8495	broad.mit.edu	37	chr11	7662948	7662948	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggtccaatagacactgaAacagcagtcaaaacagagtg	9	10	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7662948	G	G	7662948	1	3	228	0	1	0	0	0	0	0	0	0	12410	29	1	5		5	PPFIBP2	11	7662948	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	5718533	7662948	127343568	124	173035											
LRP4	4038	broad.mit.edu	37	chr11	46903194	46903194	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agtactgtcctggaggctgtCaaggctgtgggaagatgttt	15	6	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46903194	A	A	46903194	1	1	228	0	1	0	0	0	0	0	0	0	9046	841	29	3		3	LRP4	11	46903194	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	39240246	46903194	88103322	125	173036											
OR4C3	256144	broad.mit.edu	37	chr11	48347118	48347118	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgtgacttgtacccttTgctggaagttgcctgcacca	10	12	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	48347118	G	G	48347118	3	3	228	1	0	0	0	0	1	0	0	0	11144	1821	63	5	628	5	OR4C3	11	48347118	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	1443924	48347118	86659398	126	173037											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57068282	57068310	+	Intron	DEL	CTGTGAAGTGAGAGTTTCCCTTTTCATCA	-	-													tgagcctcagtttgcctcttCtgtgaagtgagagtttccct							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	57068310	-	-	57068282	6	5	228	0	1	1	0	1	0	0	0	0	16443	928	32	0		0	TNKS1BP1	11	57068282	Intron	DEL	CTGTGAAGTGAGAGTTTCCCTTTTCATCA	TCGA-91-6835-01A-11D-1855-08	8721164	57068282	77938234	127	173038											
SLC43A3	29015	broad.mit.edu	37	chr11	57192922	57192922	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcctggcagggtggccgGgctgtctgactctggatttc	17	10	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57192922	T	T	57192922	1	4	228	0	1	0	0	0	0	0	0	0	14748	1247	43	2		2	SLC43A3	11	57192922	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	124640	57192922	77813594	128	173039											
C11orf66	220004	broad.mit.edu	37	chr11	61257979	61257980	+	Missense_Mutation	DNP	GA	TG	TG													ttgcctccctgcagaaccctGacctcagctgaccccttcta							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TG	61257980	TG	TG	61257979	3	4	228	1	0	0	0	0	1	0	0	0	1668	1277	45	3	1261	3	C11orf66	11	61257979	Missense_Mutation	DNP	GA	TCGA-91-6835-01A-11D-1855-08	4065057	61257979	73748537	129	173040											
ATG2A	23130	broad.mit.edu	37	chr11	64673896	64673896	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttgcggcccgaggctccCcgctcggtcaccccttcctc	9	22	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64673896	A	A	64673896	2	1	228	1	0	0	0	0	0	0	0	1	1097	610	22	2		2	ATG2A	11	64673896	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	3415917	64673896	70332620	130	173041											
C11orf2	738	broad.mit.edu	37	chr11	64878173	64878173	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccccaatccagtgccccgAtggacaccaacctcttgagc	7	17	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64878173	C	C	64878173	3	2	228	1	0	0	0	0	1	0	0	0	1644	333	12	5	2042	5	C11orf2	11	64878173	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	204277	64878173	70128343	131	173042											
ALDH3B2	222	broad.mit.edu	37	chr11	67433999	67433999	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaggggcctctttgggagGggctactgggcggggagagc	20	9	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67433999	A	A	67433999	1	1	228	0	1	0	0	0	0	0	0	0	500	1247	43	4		4	ALDH3B2	11	67433999	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	2555826	67433999	67572517	132	173043											
ANO1	55107	broad.mit.edu	37	chr11	70026200	70026200	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggcagaatggaagtccCggctgaactgccaggtggcc	14	12	0	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70026200	A	A	70026200	1	1	228	0	1	0	0	0	0	0	0	0	695	667	23	1		1	ANO1	11	70026200	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	2592201	70026200	64980316	133	173044											
C2CD3	26005	broad.mit.edu	37	chr11	73849825	73849825	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgcatgagtcactgtgacTcttggcaactgttctaattt	8	8	3	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73849825	A	A	73849825	3	1	228	1	0	0	0	0	1	0	0	0	2176	1551	54	5	5104	5	C2CD3	11	73849825	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	3823625	73849825	61156691	134	173045											
EED	8726	broad.mit.edu	37	chr11	85961365	85961365	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcagtatagaaagtggtAcaaacactgaacgccctgat	9	9	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85961365	G	G	85961365	3	3	228	1	0	0	0	0	1	0	0	0	4962	391	14	5	148	5	EED	11	85961365	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	12111540	85961365	49045151	135	173046											
HEPHL1	341208	broad.mit.edu	37	chr11	93808581	93808581	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagtgtcaccagttcttctCagggttgtatgtgggagaga	14	6	3	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93808581	T	T	93808581	1	4	228	0	1	0	0	0	0	0	0	0	7122	841	29	4		4	HEPHL1	11	93808581	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	7847216	93808581	41197935	136	173047											
KDM5A	5927	broad.mit.edu	37	chr12	463298	463298	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcacatcaggtagtggagGaattagacaaaatgtatgat	13	4	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	463298	A	A	463298	3	1	228	1	0	0	0	0	1	0	0	0	8203	1174	41	4	4183	4	KDM5A	12	463298	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08		463298	133388597	137	173048											
VWF	7450	broad.mit.edu	37	chr12	6134980	6134980	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggaggtcataccacccacAaccccccttccagcccccat	5	21	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	6134980	C	C	6134980	1	2	228	0	1	0	0	0	0	0	0	0	17373	145	5	5		5	VWF	12	6134980	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	5671682	6134980	127716915	138	173049											
LEPREL2	10536	broad.mit.edu	37	chr12	6942711	6942711	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctaatgtcagggattccaGgggctgaccttggtgggtga	15	8	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6942711	T	T	6942711	1	4	228	0	1	0	0	0	0	0	0	0	8803	1015	35	2		2	LEPREL2	12	6942711	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	807731	6942711	126909184	139	173050											
PZP	5858	broad.mit.edu	37	chr12	9346702	9346702	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtttattaaccgagatacTggtagtattgattgaaaact	8	4	0	3	rs144906712		TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9346702	A	A	9346702	3	1	228	1	0	0	0	0	1	0	0	0	12977	1580	55	5	3327	5	PZP	12	9346702	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	2403991	9346702	124505193	140	173051											
KLRK1	22914	broad.mit.edu	37	chr12	10525829	10525829	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatttcaattattgttaGtctagaggagagacaattac	8	6	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10525829	T	T	10525829	3	4	228	1	0	0	0	0	1	0	0	0	8494	1043	36	3	119	3	KLRK1	12	10525829	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	1179127	10525829	123326066	141	173052											
KIAA0528	9847	broad.mit.edu	37	chr12	22659631	22659631	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaggaaacattgaaactTtttaagaacataccaggatt	6	5	0	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	22659631	G	G	22659631	1	3	228	0	1	0	0	0	0	0	0	0	8252	1856	64	5		5	KIAA0528	12	22659631	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	12133802	22659631	111192264	142	173053											
CAPRIN2	65981	broad.mit.edu	37	chr12	30887977	30887977	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caagttcttttgaaggcaaaTacactgcaccattcaaaccc	5	12	2	1	rs143885257	by1000genomes	TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30887977	A	A	30887977	3	1	228	1	0	0	0	0	1	0	0	0	2662	1406	49	5	2709	5	CAPRIN2	12	30887977	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	8228346	30887977	102963918	143	173054											
ALG10B	144245	broad.mit.edu	37	chr12	38710958	38710958	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttagacttaactcgtccCtttccaccccaccccagcct	3	19	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38710958	T	T	38710958	1	4	228	0	1	0	0	0	0	0	0	0	512	696	24	4		4	ALG10B	12	38710958	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	7822981	38710958	95140937	144	173055											
CCNT1	904	broad.mit.edu	37	chr12	49088166	49088166	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggattgtctgctctgaagtCttttcatctgttcctcggtc	9	10	5	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49088166	A	A	49088166	3	1	228	1	0	0	0	0	1	0	0	0	2964	912	32	3	1353	3	CCNT1	12	49088166	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	10377208	49088166	84763729	145	173056											
KRT82	3888	broad.mit.edu	37	chr12	52790038	52790038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggaggggcgcagaaaaGcatcactgggggccctggag	19	8	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52790038	T	T	52790038	1	4	228	0	1	0	0	0	0	0	0	0	8567	986	34	3		3	KRT82	12	52790038	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	3701872	52790038	81061857	146	173057											
KRT6C	286887	broad.mit.edu	37	chr12	52862852	52862852	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggcagcactttagtgCttgtagctcttcctgctgga	12	10	1	0	rs143211712		TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52862852	T	T	52862852	2	4	228	1	0	0	0	0	0	0	0	1	8553	796	28	4		4	KRT6C	12	52862852	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	72814	52862852	80989043	147	173058											
KRT76	51350	broad.mit.edu	37	chr12	53169354	53169354	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagttcccacttggtctcCaggaccttgttctgctgttc	9	13	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53169354	T	T	53169354	2	4	228	1	0	0	0	0	0	0	0	1	8560	581	21	4		4	KRT76	12	53169354	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	306502	53169354	80682541	148	173059											
CSAD	51380	broad.mit.edu	37	chr12	53552175	53552175	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgatccacccgcctcggcCtcccaaagtgctgggattac	10	15	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53552175	A	A	53552175	1	1	228	0	1	0	0	0	0	0	0	0	3957	696	24	2		2	CSAD	12	53552175	3'UTR	SNP	C	TCGA-91-6835-01A-11D-1855-08	382821	53552175	80299720	149	173060											
SLC39A5	283375	broad.mit.edu	37	chr12	56629139	56629139	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agccccttccttgtacccctGgcctccatggatctaaggtg	9	15	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56629139	C	C	56629139	1	2	228	0	1	0	0	0	0	0	0	0	14735	1363	47	4		4	SLC39A5	12	56629139	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	3076964	56629139	77222756	150	173061											
STAC3	246329	broad.mit.edu	37	chr12	57640490	57640490	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	agttttgtgcaattttagggGaagacaatccattacttctg	9	6	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57640490	A	A	57640490	1	1	228	0	1	0	0	0	0	0	0	0	15359	1189	41	4		4	STAC3	12	57640490	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	1011351	57640490	76211405	151	173062											
STAB2	55576	broad.mit.edu	37	chr12	104155039	104155039	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggagggctgcccactcGgagagtaaaagccatcaacc	11	13	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104155039	A	A	104155039	1	1	228	0	1	0	0	0	0	0	0	0	15356	1131	39	4		4	STAB2	12	104155039	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	46514549	104155039	29696856	152	173063											
POLR3B	55703	broad.mit.edu	37	chr12	106824084	106824084	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagagatttaaaatggacCgccagggtgtaacccaagtg	11	7	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	106824084	G	G	106824084	3	3	228	1	0	0	0	0	1	0	0	0	12324	652	23	4	1351	4	POLR3B	12	106824084	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	2669045	106824084	27027811	153	173064											
KNTC1	9735	broad.mit.edu	37	chr12	123075811	123075811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agttatgatttttattgttgCgtttcgtctaaaaggtgtta	9	3	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123075811	T	T	123075811	1	4	228	0	1	0	0	0	0	0	0	0	8499	783	27	4		4	KNTC1	12	123075811	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	16251727	123075811	10776084	154	173065											
AACS	65985	broad.mit.edu	37	chr12	125587112	125587112	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgaactcctgggctcaaGcaatcctcccacctcagcct	6	18	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125587112	T	T	125587112	1	4	228	0	1	0	0	0	0	0	0	0	9	986	34	3		3	AACS	12	125587112	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	2511301	125587112	8264783	155	173066											
RB1	5925	broad.mit.edu	37	chr13	48941720	48941720	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tggatcatgataaaactcttCagactgattctatagacagg	8	7	4	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48941720	T	T	48941720	4	4	228	1	0	0	0	0	0	1	0	0	13206	827	29	4	1068	4	RB1	13	48941720	Nonsense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08		48941720	66228158	156	173067											
PCDH20	64881	broad.mit.edu	37	chr13	61987635	61987635	+	Silent	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gcgttgtcattgatgtctctGatggcgatcttcaccttcac	9	11	5	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61987635	A	A	61987635	2	1	228	1	0	0	0	0	0	0	0	1	11609	1280	45	4		4	PCDH20	13	61987635	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	13045915	61987635	53182243	157	173068											
OR10G2	26534	broad.mit.edu	37	chr14	22102425	22102425	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgtgtcagcacaggccaGtctcaatactgcgcggatgt	12	10	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22102425	A	A	22102425	2	1	228	1	0	0	0	0	0	0	0	1	10993	1020	36	4		4	OR10G2	14	22102425	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08		22102425	85247115	158	173069											
SOS2	6655	broad.mit.edu	37	chr14	50667775	50667775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggcccatttatcaattgGgtgaggaaaggtcttctgaa	11	6	3	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50667775	A	A	50667775	3	1	228	1	0	0	0	0	1	0	0	0	15051	1232	43	4	3841	4	SOS2	14	50667775	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	28565350	50667775	56681765	159	173070											
PRKCH	5583	broad.mit.edu	37	chr14	61924172	61924172	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgttgtgtgcacacaccCtaagacccccaagaggactc	8	15	0	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61924172	A	A	61924172	1	1	228	0	1	0	0	0	0	0	0	0	12619	696	24	2		2	PRKCH	14	61924172	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	11256397	61924172	45425368	160	173071											
HEATR4	399671	broad.mit.edu	37	chr14	73989316	73989316	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcctccaggttcacatctaGagaaggtggccgacccagca	10	13	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73989316	C	C	73989316	3	2	228	1	0	0	0	0	1	0	0	0	7097	933	33	4	2603	4	HEATR4	14	73989316	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	12065144	73989316	33360224	161	173072											
KIAA0317	9870	broad.mit.edu	37	chr14	75143157	75143157	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	actaatgagacaggtattgtCagatgaagatacagacagca	10	6	1	5			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75143157	A	A	75143157	1	1	228	0	1	0	0	0	0	0	0	0	8237	841	29	3		3	KIAA0317	14	75143157	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1153841	75143157	32206383	162	173073											
C14orf118	55668	broad.mit.edu	37	chr14	76647211	76647211	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtaattgtcttttagtagCggttatttgcttctggacaa	10	5	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76647211	T	T	76647211	1	4	228	0	1	0	0	0	0	0	0	0	1754	783	27	4		4	C14orf118	14	76647211	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1504054	76647211	30702329	163	173074											
TDP1	55775	broad.mit.edu	37	chr14	90430011	90430011	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataactctggagccctccacAtcaagggtaagaggatgctg	11	10	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	90430011	G	G	90430011	3	3	228	1	0	0	0	0	1	0	0	0	15850	217	8	5	555	5	TDP1	14	90430011	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	13782800	90430011	16919529	164	173075											
CHGA	1113	broad.mit.edu	37	chr14	93398118	93398118	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggaggagagccttctcCataacctcattccaccttca	9	13	3	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	93398118	A	A	93398118	1	1	228	0	1	0	0	0	0	0	0	0	3369	609	21	2		2	CHGA	14	93398118	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	2968107	93398118	13951422	165	173076											
OR4N4	283694	broad.mit.edu	37	chr15	22382756	22382756	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaaaaggtaatctcctacaGaggctgcatcactcagctct	8	11	4	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22382756	T	T	22382756	3	4	228	1	0	0	0	0	1	0	0	0	11172	942	33	3	286	3	OR4N4	15	22382756	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08		22382756	80148636	166	173077											
SPTBN5	51332	broad.mit.edu	37	chr15	42154540	42154540	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccttcaaacccctctccCccatgcccactggtgtcttc	6	19	3	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42154540	A	A	42154540	1	1	228	0	1	0	0	0	0	0	0	0	15240	638	22	2		2	SPTBN5	15	42154540	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	19771784	42154540	60376852	167	173078											
LBXCOR1	390598	broad.mit.edu	37	chr15	68123100	68123100	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcctgggaagctcacccctCccctctcaagggctttccta	7	17	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68123100	T	T	68123100	1	4	228	0	1	0	0	0	0	0	0	0	8727	870	30	4		4	LBXCOR1	15	68123100	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	25968560	68123100	34408292	168	173079											
PLIN1	5346	broad.mit.edu	37	chr15	90213396	90213396	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccaggaccttgtctgaaGtgctcgcgatgggaacgctg	13	13	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90213396	T	T	90213396	3	4	228	1	0	0	0	0	1	0	0	0	12184	1029	36	3	1175	3	PLIN1	15	90213396	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	22090296	90213396	12317996	169	173080											
SRRM2	23524	broad.mit.edu	37	chr16	2814127	2814127	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggataggcctgagtcttcaCtggtattcaaagacacactt	9	9	3	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2814127	A	A	2814127	3	1	228	1	0	0	0	0	1	0	0	0	15287	564	20	3	3636	3	SRRM2	16	2814127	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08		2814127	87540626	170	173081											
CREBBP	1387	broad.mit.edu	37	chr16	3782013	3782013	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggacgcccagctcccaggcCgtgggcatcaggaagctcag	14	15	2	0	rs130009	by1000genomes	TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3782013	A	A	3782013	1	1	228	0	1	0	0	0	0	0	0	0	3893	667	23	1		1	CREBBP	16	3782013	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	967886	3782013	86572740	171	173082											
SLC5A11	115584	broad.mit.edu	37	chr16	24909301	24909301	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcttttccaggtgattGtccagcggactctggctgcc	11	11	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24909301	T	T	24909301	3	4	228	1	0	0	0	0	1	0	0	0	14777	1377	48	3	911	3	SLC5A11	16	24909301	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	21127288	24909301	65445452	172	173083											
GSG1L	146395	broad.mit.edu	37	chr16	27840114	27840114	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccccctgtgcactgacctctCccggaagtacttgatggcct	9	16	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27840114	A	A	27840114	4	1	228	1	0	0	0	0	0	1	0	0	6887	864	30	3	181	3	GSG1L	16	27840114	Nonsense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	2930813	27840114	62514639	173	173084											
ATP2A1	487	broad.mit.edu	37	chr16	28890182	28890182	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacacacgcacacgcatgCacgcgtttctcccttcaggg	8	15	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28890182	T	T	28890182	1	4	228	0	1	0	0	0	0	0	0	0	1140	725	25	4		4	ATP2A1	16	28890182	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1050068	28890182	61464571	174	173085											
E2F4	1874	broad.mit.edu	37	chr16	67231870	67231870	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggttgggctgctgctagGggagccctggcccagggcct	19	11	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67231870	T	T	67231870	1	4	228	0	1	0	0	0	0	0	0	0	4909	1247	43	2		2	E2F4	16	67231870	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	38341688	67231870	23122883	175	173086											
MINK1	50488	broad.mit.edu	37	chr17	4798435	4798435	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtgaggaagggttctgtgGtcaacgtgaatcccaccaac	12	10	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4798435	T	T	4798435	3	4	228	1	0	0	0	0	1	0	0	0	9680	1261	44	3	2848	3	MINK1	17	4798435	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08		4798435	76396775	176	173087											
EIF4A1	1973	broad.mit.edu	37	chr17	7480995	7480995	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	actggctcaccgagaagatgCatgctcgagatttcactgta	10	10	2	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	7480995	G	G	7480995	3	3	228	1	0	0	0	0	1	0	0	0	5066	710	25	4	907	4	EIF4A1	17	7480995	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	2682560	7480995	73714215	177	173088											
MYH13	8735	broad.mit.edu	37	chr17	10216590	10216590	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcagctcggccttggcttCctgctcctcctcatactgtt	8	16	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10216590	T	T	10216590	3	4	228	1	0	0	0	0	1	0	0	0	10126	864	30	4	1798	4	MYH13	17	10216590	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	2735595	10216590	70978620	178	173089											
COX10	1352	broad.mit.edu	37	chr17	14110404	14110404	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttccgcttctacgtggaCgcagaccgcaggagctcgcg	14	14	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14110404	T	T	14110404	2	4	228	1	0	0	0	0	0	0	0	1	3794	535	19	4		4	COX10	17	14110404	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	3893814	14110404	67084806	179	173090											
NCOR1	9611	broad.mit.edu	37	chr17	15935793	15935793	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gggttataaggaaactgagtTgagcctgacaaaagaaaaat	11	4	0	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15935793	G	G	15935793	2	3	228	1	0	0	0	0	0	0	0	1	10330	1799	63	5		5	NCOR1	17	15935793	Silent	SNP	T	TCGA-91-6835-01A-11D-1855-08	1825389	15935793	65259417	180	173091											
MYO15A	51168	broad.mit.edu	37	chr17	18052870	18052870	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctggatagcctctttgaCcctgtgctgtcctacgggga	11	12	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18052870	T	T	18052870	2	4	228	1	0	0	0	0	0	0	0	1	10157	506	18	4		4	MYO15A	17	18052870	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	2117077	18052870	63142340	181	173092											
CYTSB	92521	broad.mit.edu	37	chr17	20013766	20013766	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggccagcagtgaggacacGctcaacaagccaggaagtac	13	11	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20013766	A	A	20013766	2	1	228	1	0	0	0	0	0	0	0	1	4243	1074	38	4		4	CYTSB	17	20013766	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	1960896	20013766	61181444	182	173093											
SPAG5	10615	broad.mit.edu	37	chr17	26905478	26905478	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcctgccagggcctcctgGagcactttggtctctgtctc	12	14	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26905478	A	A	26905478	2	1	228	1	0	0	0	0	0	0	0	1	15097	1161	41	4		4	SPAG5	17	26905478	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	6891712	26905478	54289732	183	173094											
NF1	4763	broad.mit.edu	37	chr17	29528174	29528174	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcacaacaaccaacacttTaaggtgagagcattggtttt	7	10	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29528174	C	C	29528174	2	2	228	1	0	0	0	0	0	0	0	1	10451	1751	61	5		5	NF1	17	29528174	Silent	SNP	T	TCGA-91-6835-01A-11D-1855-08	2622696	29528174	51667036	184	173095											
ACCN1	40	broad.mit.edu	37	chr17	32364837	32364837	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcaggtgttactaccgGctttggcgggaactgcactt	12	10	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32364837	C	C	32364837	1	2	228	0	1	0	0	0	0	0	0	0	128	1218	42	4		4	ACCN1	17	32364837	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	2836663	32364837	48830373	185	173096											
STAT3	6774	broad.mit.edu	37	chr17	40490754	40490754	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaatattcacttgcctcctTgactcttgagggttttatag	7	9	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	40490754	C	C	40490754	3	2	228	1	0	0	0	0	1	0	0	0	15384	1812	63	5	1843	5	STAT3	17	40490754	Missense_Mutation	SNP	T	TCGA-91-6835-01A-11D-1855-08	8125917	40490754	40704456	186	173097											
PRKCA	5578	broad.mit.edu	37	chr17	64684503	64684503	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacaaggaatgacttcatggGatccctttcctttggagttt	9	8	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64684503	T	T	64684503	3	4	228	1	0	0	0	0	1	0	0	0	12613	1174	41	3	796	3	PRKCA	17	64684503	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	24193749	64684503	16510707	187	173098											
C17orf58	284018	broad.mit.edu	37	chr17	65989196	65989196	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acacggcttattgcagctggAggagtccagggctaacatgt	13	9	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	65989196	G	G	65989196	3	3	228	1	0	0	0	0	1	0	0	0	1882	304	11	5	359	5	C17orf58	17	65989196	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	1304693	65989196	15206014	188	173099											
ZNF521	25925	broad.mit.edu	37	chr18	22932064	22932064	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaggatggctccagaggGggcccctaacccgcagggac	14	14	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22932064	T	T	22932064	1	4	228	0	1	0	0	0	0	0	0	0	18092	1247	43	2		2	ZNF521	18	22932064	5'UTR	SNP	G	TCGA-91-6835-01A-11D-1855-08		22932064	55145184	189	173100											
MOCOS	55034	broad.mit.edu	37	chr18	33785085	33785085	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caccttcaccttggctcagtAtacctacgtggccctgtcct	7	16	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	33785085	G	G	33785085	3	3	228	1	0	0	0	0	1	0	0	0	9783	449	16	5	1086	5	MOCOS	18	33785085	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	10853021	33785085	44292163	190	173101											
ZCCHC2	54877	broad.mit.edu	37	chr18	60241580	60241581	+	Missense_Mutation	DNP	GT	TC	TC													ggatgcttgttcctagtcctGttgctatttctgcaataagg							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	60241581	TC	TC	60241580	3	4	228	1	0	0	0	0	1	0	0	0	17713	1377	48	3	2316	3	ZCCHC2	18	60241580	Missense_Mutation	DNP	GT	TCGA-91-6835-01A-11D-1855-08	26456495	60241580	17835668	191	173102											
ZNF407	55628	broad.mit.edu	37	chr18	72775115	72775115	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gtctcccttaggcattgtttCcaagtcgtacgagtgccgtc	10	12	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72775115	G	G	72775115	3	3	228	1	0	0	0	0	1	0	0	0	18014	855	30	4	5598	4	ZNF407	18	72775115	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	12533535	72775115	5302133	192	173103											
ZNF236	7776	broad.mit.edu	37	chr18	74587576	74587576	+	Nonsense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtcctgccgccttctctCagaaagggaatcttcagtcg	9	13	5	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74587576	T	T	74587576	4	4	228	1	0	0	0	0	0	1	0	0	17915	827	29	4	812	4	ZNF236	18	74587576	Nonsense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	1812461	74587576	3489672	193	173104											
MIER2	54531	broad.mit.edu	37	chr19	313564	313564	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgccaacgccgcttcacCgccctgtacaggaactcctc	8	18	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	313564	A	A	313564	2	1	228	1	0	0	0	0	0	0	0	1	9674	639	23	1		1	MIER2	19	313564	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08		313564	58815419	194	173105											
MUC16	94025	broad.mit.edu	37	chr19	9088564	9088564	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcatccatggactgagatGgagatactgacattgagaca	11	8	0	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9088564	T	T	9088564	3	4	228	1	0	0	0	0	1	0	0	0	10067	1348	47	2	40608	2	MUC16	19	9088564	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	8775000	9088564	50040419	195	173106											
CCDC123	84902	broad.mit.edu	37	chr19	33424561	33424561	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtatatctttgacgtgCtctaccagttatatctgaaa	6	8	4	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33424561	T	T	33424561	3	4	228	1	0	0	0	0	1	0	0	0	2785	797	28	4	1717	4	CCDC123	19	33424561	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	24335997	33424561	25704422	196	173107											
CHST8	64377	broad.mit.edu	37	chr19	34263411	34263411	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaagcgcctggacaccttcGaccgccagggtatcttgcac	10	15	2	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34263411	A	A	34263411	3	1	228	1	0	0	0	0	1	0	0	0	3441	1058	37	4	728	4	CHST8	19	34263411	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	838850	34263411	24865572	197	173108											
FXYD3	5349	broad.mit.edu	37	chr19	35612163	35612163	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactatggtgagagcccgtgCcccctttcccctccccacaa	7	18	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35612163	G	G	35612163	1	3	228	0	1	0	0	0	0	0	0	0	6179	747	26	4		4	FXYD3	19	35612163	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1348752	35612163	23516820	198	173109											
LGALS14	56891	broad.mit.edu	37	chr19	40196515	40196515	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaatcatcaaccacttgcAgtcgtcgtagaaatcaatca	5	10	4	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	40196515	G	G	40196515	1	3	228	0	1	0	0	0	0	0	0	0	8813	203	7	5		5	LGALS14	19	40196515	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	4584352	40196515	18932468	199	173110											
DYRK1B	9149	broad.mit.edu	37	chr19	40318862	40318862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcccatcccagccaagccCcgcccctaagcctcccgttg	6	21	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40318862	A	A	40318862	1	1	228	0	1	0	0	0	0	0	0	0	4895	638	22	2		2	DYRK1B	19	40318862	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	122347	40318862	18810121	200	173111											
CYP2S1	29785	broad.mit.edu	37	chr19	41704794	41704794	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgctgaagatggcacagGtgtgggaagggtgcagggac	18	7	0	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41704794	T	T	41704794	5	4	228	1	0	0	0	0	0	0	1	0	4207	1275	44	3	853	3	CYP2S1	19	41704794	Splice_Site	SNP	G	TCGA-91-6835-01A-11D-1855-08	1385932	41704794	17424189	201	173112											
CEACAM21	90273	broad.mit.edu	37	chr19	42091699	42091699	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaggaggtctccatacCcctcttggaaataggctcct	9	11	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42091699	A	A	42091699	1	1	228	0	1	0	0	0	0	0	0	0	3222	638	22	2		2	CEACAM21	19	42091699	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	386905	42091699	17037284	202	173113											
PSG11	5680	broad.mit.edu	37	chr19	43523198	43523198	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gatggagggcttgggagtctCcactgtgcagaaaacagaga	15	7	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43523198	A	A	43523198	4	1	228	1	0	0	0	0	0	1	0	0	12760	864	30	3	586	3	PSG11	19	43523198	Nonsense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	1431499	43523198	15605785	203	173114											
ZNF234	10780	broad.mit.edu	37	chr19	44653148	44653148	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcttgaattagtcgcctAcatttgtagacctgactttc	8	9	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	44653148	G	G	44653148	1	3	228	0	1	0	0	0	0	0	0	0	17913	406	14	5		5	ZNF234	19	44653148	Intron	SNP	A	TCGA-91-6835-01A-11D-1855-08	1129950	44653148	14475835	204	173115											
LIG1	3978	broad.mit.edu	37	chr19	48624383	48624385	+	Intron	DEL	CTC	-	-													aatacccccgggagtctaatCtccttccctcctgcttctgc							TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	48624385	-	-	48624383	6	5	228	0	1	1	0	1	0	0	0	0	8853	928	32	0		0	LIG1	19	48624383	Intron	DEL	CTC	TCGA-91-6835-01A-11D-1855-08	3971235	48624383	10504600	205	173116											
GRIN2D	2906	broad.mit.edu	37	chr19	48908251	48908251	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccgcagtgtcagcgcgcaGatccgcctgctcttctgcgc	11	17	3	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48908251	T	T	48908251	3	4	228	1	0	0	0	0	1	0	0	0	6848	933	33	3	732	3	GRIN2D	19	48908251	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	283868	48908251	10220732	206	173117											
CCDC155	147872	broad.mit.edu	37	chr19	49913232	49913232	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcacacttttgcttgttcCccatttgatgagaaaatgtt	6	9	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49913232	A	A	49913232	1	1	228	0	1	0	0	0	0	0	0	0	2815	638	22	2		2	CCDC155	19	49913232	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	1004981	49913232	9215751	207	173118											
KIR3DL1	3811	broad.mit.edu	37	chr19	55333080	55333080	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggttcaggcaggagagaGcgtgaccttgtcctgtagct	14	9	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55333080	A	A	55333080	3	1	228	1	0	0	0	0	1	0	0	0	8391	971	34	4	734	4	KIR3DL1	19	55333080	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	5419848	55333080	3795903	208	173119											
KIR2DS4	3809	broad.mit.edu	37	chr19	55351078	55351078	+	Nonsense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gccacccacggagggacctaCagatgcttcggctctttccg	11	15	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55351078	G	G	55351078	4	3	228	1	0	0	0	0	0	1	0	0	8390	478	17	4	580	4	KIR2DS4	19	55351078	Nonsense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	17998	55351078	3777905	209	173120											
ZIM3	114026	broad.mit.edu	37	chr19	57653914	57653914	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaaaatatgccaaaagGttagcacagttaattctgag	11	5	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57653914	A	A	57653914	1	1	228	0	1	0	0	0	0	0	0	0	17811	1276	44	4		4	ZIM3	19	57653914	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	2302836	57653914	1475069	210	173121											
C20orf194	25943	broad.mit.edu	37	chr20	3274968	3274968	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgaaggtgcctactcacaTgaaaaagtttttacttaatt	6	8	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3274968	A	A	3274968	1	1	228	0	1	0	0	0	0	0	0	0	2121	1479	51	5		5	C20orf194	20	3274968	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08		3274968	59750552	211	173122											
ITCH	83737	broad.mit.edu	37	chr20	33029995	33029995	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaagtattttaccagcctTttaattttgtatttaagttg	6	5	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	33029995	C	C	33029995	1	2	228	0	1	0	0	0	0	0	0	0	7938	1856	64	5		5	ITCH	20	33029995	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08	29755027	33029995	29995525	212	173123											
C20orf132	140699	broad.mit.edu	37	chr20	35731033	35731033	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtggggctggcatcagtGgcctctgtggcttctgaaag	15	8	3	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	35731033	C	C	35731033	1	2	228	0	1	0	0	0	0	0	0	0	2108	1363	47	4		4	C20orf132	20	35731033	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	2701038	35731033	27294487	213	173124											
RBPJL	11317	broad.mit.edu	37	chr20	43938386	43938386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caactgtcagccctatgcacCtcctccatccacccattggg	6	18	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43938386	A	A	43938386	1	1	228	0	1	0	0	0	0	0	0	0	13270	696	24	2		2	RBPJL	20	43938386	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	8207353	43938386	19087134	214	173125											
ZNF831	128611	broad.mit.edu	37	chr20	57828205	57828205	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	actgtgaaggtgggcatgatGattttgagctgcctctacct	12	8	1	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57828205	A	A	57828205	1	1	228	0	1	0	0	0	0	0	0	0	18314	1305	45	4		4	ZNF831	20	57828205	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	13889819	57828205	5197315	215	173126											
C20orf197	284756	broad.mit.edu	37	chr20	58645573	58645573	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacttgattttgagattcaGacaataagtgcatttttaat	6	4	1	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58645573	A	A	58645573	1	1	228	0	1	0	0	0	0	0	0	0	2124	957	33	4		4	C20orf197	20	58645573	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	817368	58645573	4379947	216	173127											
LAMA5	3911	broad.mit.edu	37	chr20	60904066	60904066	+	Silent	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ccgttgttatagaagagggaGagggaagcagcagcgtttcg	16	6	0	3			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60904066	C	C	60904066	2	2	228	1	0	0	0	0	0	0	0	1	8681	929	33	4		4	LAMA5	20	60904066	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	2258493	60904066	2121454	217	173128											
HSF2BP	11077	broad.mit.edu	37	chr21	44949577	44949577	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttggagtatcaaatgagGgatctggggagaagggacac	16	4	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44949577	T	T	44949577	1	4	228	0	1	0	0	0	0	0	0	0	7464	1247	43	2		2	HSF2BP	21	44949577	3'UTR	SNP	G	TCGA-91-6835-01A-11D-1855-08		44949577	3180318	218	173129											
MCM3AP	8888	broad.mit.edu	37	chr21	47685864	47685864	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcggagccgggtctctgGgtgctgacgggcagctccgc	18	12	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47685864	T	T	47685864	2	4	228	1	0	0	0	0	0	0	0	1	9481	1219	43	2		2	MCM3AP	21	47685864	Silent	SNP	G	TCGA-91-6835-01A-11D-1855-08	2736287	47685864	444031	219	173130											
MYO18B	84700	broad.mit.edu	37	chr22	26158988	26158988	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	attgacccgcataattcctgGctgcccctgtgttccatttt	7	13	0	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26158988	A	A	26158988	1	1	228	0	1	0	0	0	0	0	0	0	10160	1218	42	4		4	MYO18B	22	26158988	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08		26158988	25145578	220	173131											
CHEK2	11200	broad.mit.edu	37	chr22	29105850	29105850	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctcaggtgattcaccCacctcggcctcccaaagtgc	8	17	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29105850	A	A	29105850	1	1	228	0	1	0	0	0	0	0	0	0	3366	609	21	2		2	CHEK2	22	29105850	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	2946862	29105850	22198716	221	173132											
TOM1	10043	broad.mit.edu	37	chr22	35728979	35728979	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgtcttgtaggtttgAacggttccgaacaggccaga	11	8	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35728979	G	G	35728979	3	3	228	1	0	0	0	0	1	0	0	0	16474	246	9	5	939	5	TOM1	22	35728979	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	6623129	35728979	15575587	222	173133											
EFCAB6	64800	broad.mit.edu	37	chr22	43996129	43996129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtaagtaatgtgcccttttCcctcggtgtcgtatcttaaa	9	9	1	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43996129	A	A	43996129	3	1	228	1	0	0	0	0	1	0	0	0	4979	855	30	3	1849	3	EFCAB6	22	43996129	Missense_Mutation	SNP	C	TCGA-91-6835-01A-11D-1855-08	8267150	43996129	7308437	223	173134											
MOV10L1	54456	broad.mit.edu	37	chr22	50599508	50599508	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcgcttctgctgtcttcctCaaagacaggctggctctaga	10	12	4	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50599508	T	T	50599508	1	4	228	0	1	0	0	0	0	0	0	0	9813	841	29	4		4	MOV10L1	22	50599508	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	6603379	50599508	705058	224	173135											
PHEX	5251	broad.mit.edu	37	chrX	22108523	22108523	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttacagtgctagcagaaTgctttctgtttttgttttta	7	5	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22108523	A	A	22108523	1	1	228	0	1	0	0	0	0	0	0	0	11914	1479	51	5		5	PHEX	23	22108523	Intron	SNP	T	TCGA-91-6835-01A-11D-1855-08		22108523	133162037	225	173136											
ZFX	7543	broad.mit.edu	37	chrX	24228471	24228471	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgactgtgattacactaccAacaagaagataagtttacac	6	9	0	4			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24228471	G	G	24228471	3	3	228	1	0	0	0	0	1	0	0	0	17787	130	5	5	1481	5	ZFX	23	24228471	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	2119948	24228471	131042089	226	173137											
GNL3L	54552	broad.mit.edu	37	chrX	54581212	54581212	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttacctgcctttcatgtgGtgagatgtgggtagttcact	11	7	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54581212	T	T	54581212	1	4	228	0	1	0	0	0	0	0	0	0	6602	1276	44	3		3	GNL3L	23	54581212	Intron	SNP	G	TCGA-91-6835-01A-11D-1855-08	30352741	54581212	100689348	227	173138											
STARD8	9754	broad.mit.edu	37	chrX	67937663	67937663	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcctggtgcacgttcctGgggaccacaaaccaggcaca	11	13	0	0			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67937663	T	T	67937663	3	4	228	1	0	0	0	0	1	0	0	0	15381	1348	47	2	929	2	STARD8	23	67937663	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	13356451	67937663	87332897	228	173139											
ATRX	546	broad.mit.edu	37	chrX	76776888	76776888	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ccaattagcttactacagctGaaattatatcctcaagaggt	6	9	1	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76776888	A	A	76776888	3	1	228	1	0	0	0	0	1	0	0	0	1212	1294	45	4	426	4	ATRX	23	76776888	Missense_Mutation	SNP	G	TCGA-91-6835-01A-11D-1855-08	8839225	76776888	78493672	229	173140											
COL4A5	1287	broad.mit.edu	37	chrX	107911555	107911555	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttactttcataggccaaaAgggtgatggaggattacctg	11	7	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107911555	G	G	107911555	3	3	228	1	0	0	0	0	1	0	0	0	3726	72	3	5	3773	5	COL4A5	23	107911555	Missense_Mutation	SNP	A	TCGA-91-6835-01A-11D-1855-08	31134667	107911555	47359005	230	173141											
MCTS1	28985	broad.mit.edu	37	chrX	119744940	119744940	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgcagaagacatgtaagtCttactttaggcccccttaac	7	11	2	2			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119744940	T	T	119744940	1	4	228	0	1	0	0	0	0	0	0	0	9495	928	32	4		4	MCTS1	23	119744940	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	11833385	119744940	35525620	231	173142											
SPANXN1	494118	broad.mit.edu	37	chrX	144337280	144337280	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacagtattagcgttttgCtacaggaaagctaagaaaat	8	6	1	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144337280	T	T	144337280	2	4	228	1	0	0	0	0	0	0	0	1	15106	805	28	4		4	SPANXN1	23	144337280	Silent	SNP	C	TCGA-91-6835-01A-11D-1855-08	24592340	144337280	10933280	232	173143											
FUNDC2	65991	broad.mit.edu	37	chrX	154274741	154274741	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcatgtttgtatgtaaCtgacagctcatcaatttgtc	7	7	2	1			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154274741	A	A	154274741	1	1	228	0	1	0	0	0	0	0	0	0	6158	580	20	3		3	FUNDC2	23	154274741	Intron	SNP	C	TCGA-91-6835-01A-11D-1855-08	9937461	154274741	995819	233	173144											
UBE2J2	118424	broad.mit.edu	37	chr1	1190786	1190786	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggacgaggtgcgtctcccCgtctggaaccacgtctggca	13	14	3	0	rs147742881		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1190786	A	A	1190786	3	1	229	1	0	0	0	0	1	0	0	0	16987	652	23	1	206	1	UBE2J2	1	1190786	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08		1190786	248059835	1	173145											
CPSF3L	54973	broad.mit.edu	37	chr1	1260006	1260006	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgtctccgccgcgctccCggacccgcgaggcccgcctg	12	21	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1260006	A	A	1260006	1	1	229	0	1	0	0	0	0	0	0	0	3859	667	23	1		1	CPSF3L	1	1260006	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	69220	1260006	247990615	2	173146											
TAS1R3	83756	broad.mit.edu	37	chr1	1269215	1269215	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccttgtcccacctcccgCtcacgggctgcctgagcaca	9	19	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1269215	A	A	1269215	3	1	229	1	0	0	0	0	1	0	0	0	15683	797	28	3	1952	3	TAS1R3	1	1269215	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	9209	1269215	247981406	3	173147											
CDK11B	984	broad.mit.edu	37	chr1	1572836	1572836	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgctccacatagttcatcaCgatgtagatcttgtccatgt	8	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	1572836	G	G	1572836	3	3	229	1	0	0	0	0	1	0	0	0	3157	536	19	4	872	4	CDK11B	1	1572836	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	303621	1572836	247677785	4	173148											
CDK11B	984	broad.mit.edu	37	chr1	1573191	1573191	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccctcagcgacgtgatcGggaagccctccttctccttc	8	17	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1573191	T	T	1573191	3	4	229	1	0	0	0	0	1	0	0	0	3157	1116	39	1	983	1	CDK11B	1	1573191	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	355	1573191	247677430	5	173149											
GABRD	2563	broad.mit.edu	37	chr1	1961209	1961209	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagggcagaggtgagggCctggggccgagccagggaca	21	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1961209	A	A	1961209	1	1	229	0	1	0	0	0	0	0	0	0	6229	754	26	3		3	GABRD	1	1961209	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	388018	1961209	247289412	6	173150											
PRDM16	63976	broad.mit.edu	37	chr1	3301939	3301939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaggtgccgaggcaagGgttgtctgagcctctttggg	19	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3301939	T	T	3301939	1	4	229	0	1	0	0	0	0	0	0	0	12563	1247	43	2		2	PRDM16	1	3301939	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1340730	3301939	245948682	7	173151											
NPHP4	261734	broad.mit.edu	37	chr1	6008261	6008261	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattgtgcacgcccacacgCaggcgccgctccaggatctc	10	18	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6008261	A	A	6008261	2	1	229	1	0	0	0	0	0	0	0	1	10676	697	25	3		3	NPHP4	1	6008261	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2706322	6008261	243242360	8	173152											
KIF1B	23095	broad.mit.edu	37	chr1	10327560	10327560	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggatctgtccaagttGgcagttacttcctacacaga	11	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10327560	A	A	10327560	2	1	229	1	0	0	0	0	0	0	0	1	8354	1339	47	4		4	KIF1B	1	10327560	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	4319299	10327560	238923061	9	173153											
MASP2	10747	broad.mit.edu	37	chr1	11105579	11105579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcctctcccggggccaCctggcactcgtcaatgtctg	13	16	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11105579	A	A	11105579	3	1	229	1	0	0	0	0	1	0	0	0	9415	507	18	3	1680	3	MASP2	1	11105579	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	778019	11105579	238145042	10	173154											
MTOR	2475	broad.mit.edu	37	chr1	11182170	11182170	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgataaagggatgacagCgtatctctggatgctggcgc	15	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11182170	A	A	11182170	3	1	229	1	0	0	0	0	1	0	0	0	10048	768	27	3	1017	3	MTOR	1	11182170	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	76591	11182170	238068451	11	173155											
PTCHD2	57540	broad.mit.edu	37	chr1	11561436	11561436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actctggcgcttaagtcccaGtttggatcctgggggcggaa	14	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11561436	T	T	11561436	3	4	229	1	0	0	0	0	1	0	0	0	12839	1020	36	3	389	3	PTCHD2	1	11561436	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	379266	11561436	237689185	12	173156											
PTCHD2	57540	broad.mit.edu	37	chr1	11591583	11591583	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagggggacaggctcttccAgggccaccacgcactccctt	12	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11591583	T	T	11591583	1	4	229	0	1	0	0	0	0	0	0	0	12839	203	7	5		5	PTCHD2	1	11591583	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	30147	11591583	237659038	13	173157											
NPPA	4878	broad.mit.edu	37	chr1	11907172	11907172	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccccagttcctcttacccGgaagctgttacagcccagtc	7	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11907172	T	T	11907172	2	4	229	1	0	0	0	0	0	0	0	1	10686	1115	39	1		1	NPPA	1	11907172	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	315589	11907172	237343449	14	173158											
PLOD1	5351	broad.mit.edu	37	chr1	12026276	12026276	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggcagttgagccaatggtGaggaccctagcctgcttccc	12	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12026276	T	T	12026276	1	4	229	0	1	0	0	0	0	0	0	0	12196	1305	45	3		3	PLOD1	1	12026276	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	119104	12026276	237224345	15	173159											
VPS13D	55187	broad.mit.edu	37	chr1	12339553	12339553	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatttcatctcttttatgcCagcttttcacatcctgaaca	3	12	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12339553	T	T	12339553	1	4	229	0	1	0	0	0	0	0	0	0	17319	609	21	4		4	VPS13D	1	12339553	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	313277	12339553	236911068	16	173160											
AADACL4	343066	broad.mit.edu	37	chr1	12721835	12721835	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgcaattatctggcccGggagactgaatctgtacttc	10	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12721835	T	T	12721835	3	4	229	1	0	0	0	0	1	0	0	0	13	1116	39	1	429	1	AADACL4	1	12721835	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	382282	12721835	236528786	17	173161											
LOC649330	649330	broad.mit.edu	37	chr1	12907643	12907643	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccagacttggaagatcccCgctttccactcttagaattg	7	12	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12907643	A	A	12907643	3	1	229	1	0	0	0	0	1	0	0	0	8969	652	23	1	385	1	LOC649330	1	12907643	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	185808	12907643	236342978	18	173162											
PRAMEF4	400735	broad.mit.edu	37	chr1	12941827	12941827	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cgagagacatccatgtgggaGagaatgagtttctgaagatt	13	5	1	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12941827	T	T	12941827	2	4	229	1	0	0	0	0	0	0	0	1	12541	929	33	3		3	PRAMEF4	1	12941827	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	34184	12941827	236308794	19	173163											
PRDM2	7799	broad.mit.edu	37	chr1	14106796	14106796	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcaaacagaaggctgagGgtacaggcaagactccagtc	13	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14106796	T	T	14106796	3	4	229	1	0	0	0	0	1	0	0	0	12564	1232	43	2	2532	2	PRDM2	1	14106796	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1164969	14106796	235143825	20	173164											
CLCNKA	1187	broad.mit.edu	37	chr1	16352615	16352615	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctaaggttctggaatccCggagctgaagaccatgttgg	14	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16352615	A	A	16352615	3	1	229	1	0	0	0	0	1	0	0	0	3500	652	23	1	385	1	CLCNKA	1	16352615	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2245819	16352615	232898006	21	173165											
NBPF1	55672	broad.mit.edu	37	chr1	16890489	16890489	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggtggagacttgttccCatcaaagtaagaaacctatt	8	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16890489	A	A	16890489	1	1	229	0	1	0	0	0	0	0	0	0	10286	594	21	2		2	NBPF1	1	16890489	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	537874	16890489	232360132	22	173166											
NBPF1	55672	broad.mit.edu	37	chr1	16892189	16892189	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcataaaaggaacttccataGggcaggcaggagtcaggctg	14	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16892189	T	T	16892189	2	4	229	1	0	0	0	0	0	0	0	1	10286	987	35	2		2	NBPF1	1	16892189	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1700	16892189	232358432	23	173167											
NBPF1	55672	broad.mit.edu	37	chr1	16908028	16908028	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagatatttcccacttccCattctccaagcacagtcagc	4	15	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16908028	A	A	16908028	1	1	229	0	1	0	0	0	0	0	0	0	10286	609	21	2		2	NBPF1	1	16908028	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	15839	16908028	232342593	24	173168											
CROCC	9696	broad.mit.edu	37	chr1	17229298	17229303	+	Intron	DEL	ATAATA	-	-													aaagctgatgtactcaaattAtaatacacttacctgttctg					rs77418498		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	17229303	-	-	17229298	6	5	229	0	1	1	0	1	0	0	0	0	3925	464	16	0		0	CROCC	1	17229298	Intron	DEL	ATAATA	TCGA-91-6836-01A-21D-1855-08	321270	17229298	232021323	25	173169											
KIF17	57576	broad.mit.edu	37	chr1	21031415	21031415	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacagaccaggcaaagtGgcgagggcctcgggtgagcc	16	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21031415	T	T	21031415	1	4	229	0	1	0	0	0	0	0	0	0	8349	1363	47	2		2	KIF17	1	21031415	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3802117	21031415	228219206	26	173170											
CDC42	998	broad.mit.edu	37	chr1	22416542	22416542	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaaactgttttctccttccCttctttgctgctgcttcctg	5	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22416542	A	A	22416542	1	1	229	0	1	0	0	0	0	0	0	0	3101	696	24	2		2	CDC42	1	22416542	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1385127	22416542	226834079	27	173171											
EPHA8	2046	broad.mit.edu	37	chr1	22924727	22924727	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcgtgtcccacccctgcctCttgcatgggcttggggaggg	15	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22924727	T	T	22924727	1	4	229	0	1	0	0	0	0	0	0	0	5215	928	32	4		4	EPHA8	1	22924727	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	508185	22924727	226325894	28	173172											
C1QC	714	broad.mit.edu	37	chr1	22974119	22974119	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagtggtcaccttctgtgGccacacgtccaaaaccaatc	7	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22974119	A	A	22974119	3	1	229	1	0	0	0	0	1	0	0	0	1977	1203	42	4	587	4	C1QC	1	22974119	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	49392	22974119	226276502	29	173173											
LUZP1	7798	broad.mit.edu	37	chr1	23420543	23420543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttcaattctcagcaccCgctggcgcagcacttcaatc	7	16	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23420543	A	A	23420543	3	1	229	1	0	0	0	0	1	0	0	0	9173	652	23	1	3026	1	LUZP1	1	23420543	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	446424	23420543	225830078	30	173174											
ZNF436	80818	broad.mit.edu	37	chr1	23688528	23688528	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaactcttctcacattcGgtacattcataaggtttctc	5	11	4	1	rs144729139		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23688528	T	T	23688528	2	4	229	1	0	0	0	0	0	0	0	1	18036	1103	39	1		1	ZNF436	1	23688528	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	267985	23688528	225562093	31	173175											
SRRM1	10250	broad.mit.edu	37	chr1	24979112	24979112	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagacggcgccatagatccCgatcaaggtgagttgtggct	13	10	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24979112	A	A	24979112	2	1	229	1	0	0	0	0	0	0	0	1	15286	644	23	1		1	SRRM1	1	24979112	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1290584	24979112	224271509	32	173176											
TRIM63	84676	broad.mit.edu	37	chr1	26384853	26384853	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtagagttgaactgaccCcacccagacccttctagtcc	8	15	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26384853	A	A	26384853	1	1	229	0	1	0	0	0	0	0	0	0	16663	638	22	2		2	TRIM63	1	26384853	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1405741	26384853	222865768	33	173177											
SFN	2810	broad.mit.edu	37	chr1	27190469	27190469	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgttgcccgccaccgccCcgccctgccccctccagtcc	9	23	0	0	rs75343738		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27190469	A	A	27190469	1	1	229	0	1	0	0	0	0	0	0	0	14272	638	22	2		2	SFN	1	27190469	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	805616	27190469	222060152	34	173178											
AHDC1	27245	broad.mit.edu	37	chr1	27878163	27878163	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgggtggcggtgcaggcGggcggctcagtcggagccca	20	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27878163	T	T	27878163	3	4	229	1	0	0	0	0	1	0	0	0	412	1116	39	1	4351	1	AHDC1	1	27878163	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	687694	27878163	221372458	35	173179											
PHACTR4	65979	broad.mit.edu	37	chr1	28792091	28792091	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaacatagtgagaccctGtctcaatttaaaaaagagag	10	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28792091	T	T	28792091	1	4	229	0	1	0	0	0	0	0	0	0	11907	1392	48	3		3	PHACTR4	1	28792091	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	913928	28792091	220458530	36	173180											
PTPRU	10076	broad.mit.edu	37	chr1	29618423	29618423	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccgtcaactaccgccaGgagaagacacacatgatgag	10	13	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29618423	T	T	29618423	3	4	229	1	0	0	0	0	1	0	0	0	12921	991	35	2	2453	2	PTPRU	1	29618423	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	826332	29618423	219632198	37	173181											
COL16A1	1307	broad.mit.edu	37	chr1	32154451	32154451	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggctgggctgggagaaagTcgtcactcaccggaaggcca	16	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32154451	A	A	32154451	1	1	229	0	1	0	0	0	0	0	0	0	3705	1682	58	5		5	COL16A1	1	32154451	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2536028	32154451	217096170	38	173182											
KHDRBS1	10657	broad.mit.edu	37	chr1	32503442	32503442	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcattttgtaggggccgTggtgttggaccacctcgggg	15	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32503442	A	A	32503442	2	1	229	1	0	0	0	0	0	0	0	1	8216	1683	59	5		5	KHDRBS1	1	32503442	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	348991	32503442	216747179	39	173183											
CCDC28B	79140	broad.mit.edu	37	chr1	32670142	32670142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatagcccccagagcattgGggatttggcctggttcccct	12	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32670142	T	T	32670142	1	4	229	0	1	0	0	0	0	0	0	0	2830	1247	43	2		2	CCDC28B	1	32670142	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	166700	32670142	216580479	40	173184											
IQCC	55721	broad.mit.edu	37	chr1	32672012	32672012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagactcacctcctcacaccCcactccttaaccctcaccaa	1	21	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32672012	A	A	32672012	1	1	229	0	1	0	0	0	0	0	0	0	7874	638	22	2		2	IQCC	1	32672012	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1870	32672012	216578609	41	173185											
S100PBP	64766	broad.mit.edu	37	chr1	33291714	33291714	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaaatgatgtgctcacGggtgccctctgaacagtctt	10	11	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33291714	T	T	33291714	3	4	229	1	0	0	0	0	1	0	0	0	13902	1116	39	1	16	1	S100PBP	1	33291714	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	619702	33291714	215958907	42	173186											
ADC	113451	broad.mit.edu	37	chr1	33585801	33585801	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgggcctcgttcccccCggagaatcccagcggggcct	14	15	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33585801	A	A	33585801	1	1	229	0	1	0	0	0	0	0	0	0	287	667	23	1		1	ADC	1	33585801	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	294087	33585801	215664820	43	173187											
CSMD2	114784	broad.mit.edu	37	chr1	33987181	33987181	+	Intron	DEL	G	-	-													ggggagcacagagagcaggtGggaggctgctggaaggatct							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	33987181	-	-	33987181	6	5	229	0	1	1	0	1	0	0	0	0	3979	1363	47	0		0	CSMD2	1	33987181	Intron	DEL	G	TCGA-91-6836-01A-21D-1855-08	401380	33987181	215263440	44	173188											
KIAA0319L	79932	broad.mit.edu	37	chr1	35906654	35906654	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagggcccctacctgctcGggaggttggcttcagctcca	12	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35906654	T	T	35906654	2	4	229	1	0	0	0	0	0	0	0	1	8239	1124	39	1		1	KIAA0319L	1	35906654	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1919473	35906654	213343967	45	173189											
KIAA0319L	79932	broad.mit.edu	37	chr1	35972379	35972379	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcaggtctgagtgcagctCtgggtgggctctgcctccaa	14	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35972379	A	A	35972379	3	1	229	1	0	0	0	0	1	0	0	0	8239	913	32	3	2725	3	KIAA0319L	1	35972379	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	65725	35972379	213278242	46	173190											
EIF2C4	192670	broad.mit.edu	37	chr1	36316599	36316599	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagcccctgcatattatGcccggcttgtagcatttagg	9	12	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36316599	T	T	36316599	3	4	229	1	0	0	0	0	1	0	0	0	5048	1319	46	3	2488	3	EIF2C4	1	36316599	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	344220	36316599	212934022	47	173191											
EPHA10	284656	broad.mit.edu	37	chr1	38186587	38186587	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcacacaagtttccccccCagggtcccagactgggcctc	9	18	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38186587	A	A	38186587	1	1	229	0	1	0	0	0	0	0	0	0	5208	609	21	2		2	EPHA10	1	38186587	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1869988	38186587	211064034	48	173192											
MACF1	23499	broad.mit.edu	37	chr1	39696923	39696923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttaatgaaggtaggacCctttcatatatatgctgccc	8	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39696923	A	A	39696923	1	1	229	0	1	0	0	0	0	0	0	0	9232	638	22	2		2	MACF1	1	39696923	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1510336	39696923	209553698	49	173193											
MACF1	23499	broad.mit.edu	37	chr1	39929402	39929402	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgttgtggtggtttctcaTatgtggctgatcccaccttt	10	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39929402	C	C	39929402	1	2	229	0	1	0	0	0	0	0	0	0	9232	1421	49	5		5	MACF1	1	39929402	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	232479	39929402	209321219	50	173194											
KIAA0467	23334	broad.mit.edu	37	chr1	43891306	43891306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgacgtattctgagatccCgcaagctgtgagtgtcctca	10	12	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43891306	A	A	43891306	3	1	229	1	0	0	0	0	1	0	0	0	8248	652	23	1	291	1	KIAA0467	1	43891306	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3961904	43891306	205359315	51	173195											
KIAA0467	23334	broad.mit.edu	37	chr1	43895518	43895518	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatagcgtcatccaggtGggaagcttgggtgagggtag	16	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43895518	T	T	43895518	1	4	229	0	1	0	0	0	0	0	0	0	8248	1363	47	2		2	KIAA0467	1	43895518	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4212	43895518	205355103	52	173196											
KDM4A	9682	broad.mit.edu	37	chr1	44169216	44169216	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcctggttcactcttccCtgagtagaggacagttacct	9	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44169216	A	A	44169216	1	1	229	0	1	0	0	0	0	0	0	0	8198	696	24	2		2	KDM4A	1	44169216	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	273698	44169216	205081405	53	173197											
PTCH2	8643	broad.mit.edu	37	chr1	45297682	45297682	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttcaataaggggaactcCtgacttgtagcagattttgt	9	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45297682	A	A	45297682	4	1	229	1	0	0	0	0	0	1	0	0	12837	690	24	2	3217	2	PTCH2	1	45297682	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1128466	45297682	203952939	54	173198											
HECTD3	79654	broad.mit.edu	37	chr1	45469348	45469348	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaacccacctggcatAgtgtggcaggaagagggtgc	15	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45469348	G	G	45469348	3	3	229	1	0	0	0	0	1	0	0	0	7108	420	15	5	99	5	HECTD3	1	45469348	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	171666	45469348	203781273	55	173199											
ZSWIM5	57643	broad.mit.edu	37	chr1	45486330	45486330	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggcaacgttgagcagGgtgctgtcagtactactgtc	13	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45486330	T	T	45486330	2	4	229	1	0	0	0	0	0	0	0	1	18373	1219	43	2		2	ZSWIM5	1	45486330	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	16982	45486330	203764291	56	173200											
IPP	3652	broad.mit.edu	37	chr1	46165685	46165685	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgactggtgatcatgttacCaatttctgtccatgtatctg	8	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46165685	A	A	46165685	3	1	229	1	0	0	0	0	1	0	0	0	7870	594	21	2	152	2	IPP	1	46165685	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	679355	46165685	203084936	57	173201											
FAF1	11124	broad.mit.edu	37	chr1	51048295	51048295	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaactgtacttacatctcGggctttcacatagaaggcct	7	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51048295	T	T	51048295	2	4	229	1	0	0	0	0	0	0	0	1	5415	1124	39	1		1	FAF1	1	51048295	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	4882610	51048295	198202326	58	173202											
CDCP2	200008	broad.mit.edu	37	chr1	54606767	54606767	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtggagcgccagcccctcCtacctgagaagtagtaggcc	14	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54606767	A	A	54606767	1	1	229	0	1	0	0	0	0	0	0	0	3124	696	24	2		2	CDCP2	1	54606767	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3558472	54606767	194643854	59	173203											
ACOT11	26027	broad.mit.edu	37	chr1	55077179	55077179	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccaccccggccttcccCcttctgatatcccttccacc	4	22	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55077179	A	A	55077179	1	1	229	0	1	0	0	0	0	0	0	0	149	638	22	2		2	ACOT11	1	55077179	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	470412	55077179	194173442	60	173204											
FGGY	55277	broad.mit.edu	37	chr1	60125889	60125889	+	Splice_Site	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcccttcatgcctgcAggtcaccggattgaaactgt	8	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60125889	T	T	60125889	5	4	229	1	0	0	0	0	0	0	1	0	5928	202	7	5	1338	5	FGGY	1	60125889	Splice_Site	SNP	A	TCGA-91-6836-01A-21D-1855-08	5048710	60125889	189124732	61	173205											
INADL	10207	broad.mit.edu	37	chr1	62261224	62261224	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attcaagtgaatgacaaaatAgttgctgtaagtaactcgcc	8	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62261224	T	T	62261224	2	4	229	1	0	0	0	0	0	0	0	1	7801	410	15	5		5	INADL	1	62261224	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	2135335	62261224	186989397	62	173206											
LEPR	3953	broad.mit.edu	37	chr1	66081754	66081754	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgataaaccatcatacttccTgcaatggaacatggtcagaa	7	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	66081754	G	G	66081754	3	3	229	1	0	0	0	0	1	0	0	0	8800	1580	55	5	2109	5	LEPR	1	66081754	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	3820530	66081754	183168867	63	173207											
SGIP1	84251	broad.mit.edu	37	chr1	67145433	67145433	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccccttaacaattggacCaggtacgcttttgttttttc	6	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67145433	A	A	67145433	3	1	229	1	0	0	0	0	1	0	0	0	14319	594	21	2	866	2	SGIP1	1	67145433	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1063679	67145433	182105188	64	173208											
SGIP1	84251	broad.mit.edu	37	chr1	67205156	67205156	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggccctcaacaatgtgCagttcctggtccccatcgac	9	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67205156	G	G	67205156	3	3	229	1	0	0	0	0	1	0	0	0	14319	711	25	4	2256	4	SGIP1	1	67205156	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	59723	67205156	182045465	65	173209											
IL12RB2	3595	broad.mit.edu	37	chr1	67796441	67796441	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagctacatctttataaGggaagttggagtgattggag	12	4	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67796441	T	T	67796441	3	4	229	1	0	0	0	0	1	0	0	0	7697	991	35	2	928	2	IL12RB2	1	67796441	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	591285	67796441	181454180	66	173210											
DIRAS3	9077	broad.mit.edu	37	chr1	68512651	68512651	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtagaccaggacgaaggcGtggccccgggctataacgtg	16	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68512651	T	T	68512651	3	4	229	1	0	0	0	0	1	0	0	0	4572	1136	40	3	363	3	DIRAS3	1	68512651	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	716210	68512651	180737970	67	173211											
LRRC7	57554	broad.mit.edu	37	chr1	70518721	70518721	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaatagaccccgtcccagCaaagcaacattttagacaat	6	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70518721	G	G	70518721	3	3	229	1	0	0	0	0	1	0	0	0	9107	711	25	4	4091	4	LRRC7	1	70518721	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2006070	70518721	178731900	68	173212											
C1orf173	127254	broad.mit.edu	37	chr1	75114798	75114798	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagaaagtaatttttctAaaatgagggcaagtggaaga	12	2	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	75114798	C	C	75114798	1	2	229	0	1	0	0	0	0	0	0	0	2034	377	13	5		5	C1orf173	1	75114798	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	4596077	75114798	174135823	69	173213											
ST6GALNAC3	256435	broad.mit.edu	37	chr1	76779642	76779642	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctacacatacaggcggccCcttcgaactcactatggata	7	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76779642	A	A	76779642	2	1	229	1	0	0	0	0	0	0	0	1	15343	610	22	2		2	ST6GALNAC3	1	76779642	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1664844	76779642	172470979	70	173214											
LPHN2	23266	broad.mit.edu	37	chr1	82409162	82409162	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcgatttgaagcaacgtggGagactgtatacgacaaacgt	11	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	82409162	A	A	82409162	3	1	229	1	0	0	0	0	1	0	0	0	9003	1175	41	4	921	4	LPHN2	1	82409162	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5629520	82409162	166841459	71	173215											
WDR63	126820	broad.mit.edu	37	chr1	85583460	85583460	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcagaagaaatgaaccCgtatcataatctggaaagtg	11	6	2	3	rs142129983	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85583460	A	A	85583460	3	1	229	1	0	0	0	0	1	0	0	0	17441	652	23	1	1897	1	WDR63	1	85583460	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3174298	85583460	163667161	72	173216											
GBP4	115361	broad.mit.edu	37	chr1	89664366	89664366	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccactgcctttgtcacCcgccagtgtgaagtctccaa	7	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89664366	A	A	89664366	1	1	229	0	1	0	0	0	0	0	0	0	6338	638	22	2		2	GBP4	1	89664366	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4080906	89664366	159586255	73	173217											
C1orf146	388649	broad.mit.edu	37	chr1	92696862	92696862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaaaatgtctccaatacCctagttttatttccatcttt	2	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92696862	A	A	92696862	1	1	229	0	1	0	0	0	0	0	0	0	2023	638	22	2		2	C1orf146	1	92696862	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3032496	92696862	156553759	74	173218											
LPPR5	163404	broad.mit.edu	37	chr1	99358716	99358716	+	Intron	SNP	A	T	T													ttgggaacattagctttgtaAaatatgtagtacctttacaa							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99358716	T	T	99358716	1	4	229	0	1	0	0	0	0	0	0	0	9015	29	1	5		5	LPPR5	1	99358716	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	6661854	99358716	149891905	75	173219	716	2									
LPPR5	163404	broad.mit.edu	37	chr1	99358718	99358718	+	Intron	SNP	A	T	T													gggaacattagctttgtaaaAtatgtagtacctttacaaat							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99358718	T	T	99358718	1	4	229	0	1	0	0	0	0	0	0	0	9015	116	4	5		5	LPPR5	1	99358718	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	2	99358718	149891903	76	173220	716	2									
VAV3	10451	broad.mit.edu	37	chr1	108298001	108298001	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacaacaactcctagaatgtCgttgatgtgggggtgagggg	15	6	0	3	rs72979653	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108298001	A	A	108298001	1	1	229	0	1	0	0	0	0	0	0	0	17260	899	31	3		3	VAV3	1	108298001	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	8939283	108298001	140952620	77	173221											
SORT1	6272	broad.mit.edu	37	chr1	109856583	109856583	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccctcgcaatgggaaattTatttcctgaagttggagcca	10	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109856583	A	A	109856583	1	1	229	0	1	0	0	0	0	0	0	0	15049	1769	61	5		5	SORT1	1	109856583	3'UTR	SNP	T	TCGA-91-6836-01A-21D-1855-08	1558582	109856583	139394038	78	173222											
SLC6A17	388662	broad.mit.edu	37	chr1	110737248	110737248	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcgccttcactgaggccatGacgcacttccccgcctcccc	7	20	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110737248	T	T	110737248	3	4	229	1	0	0	0	0	1	0	0	0	14794	1290	45	3	1377	3	SLC6A17	1	110737248	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	880665	110737248	138513373	79	173223											
SLC6A17	388662	broad.mit.edu	37	chr1	110737419	110737419	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctccctgcccccatgcccAggctctgcaggctgcccttg	9	20	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110737419	T	T	110737419	1	4	229	0	1	0	0	0	0	0	0	0	14794	203	7	5		5	SLC6A17	1	110737419	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	171	110737419	138513202	80	173224											
RAP1A	5906	broad.mit.edu	37	chr1	112234014	112234014	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caagctagtggtccttggttCaggaggcgttgggaagtctg	16	7	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112234014	T	T	112234014	3	4	229	1	0	0	0	0	1	0	0	0	13143	838	29	4	34	4	RAP1A	1	112234014	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1496595	112234014	137016607	81	173225											
TBX15	6913	broad.mit.edu	37	chr1	119474219	119474219	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaattctttgaatctggcCactcaaaggaatttgtcctt	7	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119474219	A	A	119474219	1	1	229	0	1	0	0	0	0	0	0	0	15774	609	21	2		2	TBX15	1	119474219	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7240205	119474219	129776402	82	173226											
PPIAL4G	644591	broad.mit.edu	37	chr1	143767861	143767861	+	5'UTR	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaccatggctgatagtacAgggctcacagcgatggcggc	14	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143767861	T	T	143767861	1	4	229	0	1	0	0	0	0	0	0	0	12419	203	7	5		5	PPIAL4G	1	143767861	5'UTR	SNP	A	TCGA-91-6836-01A-21D-1855-08	24293642	143767861	105482760	83	173227											
NBPF9	400818	broad.mit.edu	37	chr1	144816652	144816652	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcctctcatgttgaacGggaagatgctgtacacatta	8	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144816652	T	T	144816652	3	4	229	1	0	0	0	0	1	0	0	0	10294	1116	39	1	1595	1	NBPF9	1	144816652	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1048791	144816652	104433969	84	173228											
PDE4DIP	9659	broad.mit.edu	37	chr1	144857089	144857089	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcttctgttattcataaTgatatcctcagtttgctcca	5	9	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144857089	C	C	144857089	1	2	229	0	1	0	0	0	0	0	0	0	11737	1479	51	5		5	PDE4DIP	1	144857089	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	40437	144857089	104393532	85	173229											
PDE4DIP	9659	broad.mit.edu	37	chr1	144859641	144859641	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	aggttgctagactagagcatCtctgatttcaacctgaccct	8	11	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144859641	G	G	144859641	1	3	229	0	1	0	0	0	0	0	0	0	11737	928	32	4		4	PDE4DIP	1	144859641	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2552	144859641	104390980	86	173230											
PDE4DIP	9659	broad.mit.edu	37	chr1	144879317	144879317	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taactgagagggaccggaccCggctcttgaggttttgaatg	14	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144879317	A	A	144879317	3	1	229	1	0	0	0	0	1	0	0	0	11737	652	23	1	2979	1	PDE4DIP	1	144879317	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	19676	144879317	104371304	87	173231											
PDE4DIP	9659	broad.mit.edu	37	chr1	144922750	144922750	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcttaggggatattacCttgttatttttcctacatag	6	6	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144922750	A	A	144922750	1	1	229	0	1	0	0	0	0	0	0	0	11737	696	24	2		2	PDE4DIP	1	144922750	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	43433	144922750	104327871	88	173232											
PDE4DIP	9659	broad.mit.edu	37	chr1	144931287	144931287	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgatcctcattctccaccCagcactcaaaccctgaatag	4	16	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144931287	A	A	144931287	1	1	229	0	1	0	0	0	0	0	0	0	11737	595	21	2		2	PDE4DIP	1	144931287	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	8537	144931287	104319334	89	173233											
SEC22B	9554	broad.mit.edu	37	chr1	145115872	145115872	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgttaatagtgtatgtcCgattctggtggctgtgaaat	11	5	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145115872	A	A	145115872	2	1	229	1	0	0	0	0	0	0	0	1	14102	644	23	1		1	SEC22B	1	145115872	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	184585	145115872	104134749	90	173234											
NBPF10	100132406	broad.mit.edu	37	chr1	145311029	145311029	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agactgatgtccctgtgttaGgattggacagaggaatgttt	13	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145311029	T	T	145311029	1	4	229	0	1	0	0	0	0	0	0	0	10287	1015	35	2		2	NBPF10	1	145311029	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	195157	145311029	103939592	91	173235											
NBPF10	100132406	broad.mit.edu	37	chr1	145439966	145439966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctattctcctgggtcatgaGgatgataaatcagacgtctt	9	8	5	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145439966	T	T	145439966	1	4	229	0	1	0	0	0	0	0	0	0	10287	1015	35	2		2	NBPF10	1	145439966	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	128937	145439966	103810655	92	173236											
LIX1L	128077	broad.mit.edu	37	chr1	145487351	145487351	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggcagatgaagcagtccCgtggtgctgacttaaagaat	12	8	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145487351	A	A	145487351	3	1	229	1	0	0	0	0	1	0	0	0	8906	652	23	1	346	1	LIX1L	1	145487351	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	47385	145487351	103763270	93	173237											
ITGA10	8515	broad.mit.edu	37	chr1	145533110	145533110	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggaggctctgtgctatGgcttgaaggaggccaccgcc	16	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145533110	A	A	145533110	4	1	229	1	0	0	0	0	0	1	0	0	7943	1357	47	4	1247	4	ITGA10	1	145533110	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	45759	145533110	103717511	94	173238											
PIAS3	10401	broad.mit.edu	37	chr1	145578248	145578248	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttccccggaagaccctgGggccctctgatctctccctt	9	17	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145578248	T	T	145578248	3	4	229	1	0	0	0	0	1	0	0	0	11972	1232	43	2	217	2	PIAS3	1	145578248	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	45138	145578248	103672373	95	173239											
NBPF10	100132406	broad.mit.edu	37	chr1	145579346	145579346	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgccggtaaatgctctccCcttcttctgtcagtaatccc	6	16	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145579346	A	A	145579346	1	1	229	0	1	0	0	0	0	0	0	0	10287	638	22	2		2	NBPF10	1	145579346	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1098	145579346	103671275	96	173240											
NBPF10	100132406	broad.mit.edu	37	chr1	145595095	145595095	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccgtatggaggaaatgGggagaaggtccagattgagt	16	4	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145595095	T	T	145595095	1	4	229	0	1	0	0	0	0	0	0	0	10287	1247	43	2		2	NBPF10	1	145595095	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	15749	145595095	103655526	97	173241											
NBPF10	100132406	broad.mit.edu	37	chr1	145608349	145608349	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaagatagctcagggttcaCtcccatagccagctgatcta	8	12	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145608349	A	A	145608349	1	1	229	0	1	0	0	0	0	0	0	0	10287	580	20	3		3	NBPF10	1	145608349	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	13254	145608349	103642272	98	173242											
CD160	11126	broad.mit.edu	37	chr1	145696534	145696534	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	attgtaatgagaaagatactAagccatagtcagactcatct	7	7	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145696534	G	G	145696534	1	3	229	0	1	0	0	0	0	0	0	0	2996	377	13	5		5	CD160	1	145696534	3'UTR	SNP	A	TCGA-91-6836-01A-21D-1855-08	88185	145696534	103554087	99	173243											
NBPF10	100132406	broad.mit.edu	37	chr1	146398242	146398242	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgttgcaatatttgaacGgatcactcaacgcttttcac	6	11	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146398242	T	T	146398242	1	4	229	0	1	0	0	0	0	0	0	0	10287	1131	39	1		1	NBPF10	1	146398242	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	701708	146398242	102852379	100	173244											
CHD1L	9557	broad.mit.edu	37	chr1	146757044	146757044	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatctaccaaaaggaagcGggttctgagtccagaagagc	14	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146757044	T	T	146757044	3	4	229	1	0	0	0	0	1	0	0	0	3355	1116	39	1	1964	1	CHD1L	1	146757044	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	358802	146757044	102493577	101	173245											
CHD1L	9557	broad.mit.edu	37	chr1	146766190	146766190	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctgcaagaggcatccCaacttacatgtatccttttg	8	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146766190	A	A	146766190	3	1	229	1	0	0	0	0	1	0	0	0	3355	594	21	2	2692	2	CHD1L	1	146766190	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	9146	146766190	102484431	102	173246											
BCL9	607	broad.mit.edu	37	chr1	147094120	147094120	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcctctgtgaatatccCtggaagtcttccctctagta	8	13	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147094120	A	A	147094120	3	1	229	1	0	0	0	0	1	0	0	0	1386	681	24	2	2973	2	BCL9	1	147094120	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	327930	147094120	102156501	103	173247											
BCL9	607	broad.mit.edu	37	chr1	147095806	147095806	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcatggggtcccaatGgggcctggcttgatgtcaca	12	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147095806	T	T	147095806	3	4	229	1	0	0	0	0	1	0	0	0	1386	1348	47	2	3353	2	BCL9	1	147095806	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1686	147095806	102154815	104	173248											
ACP6	51205	broad.mit.edu	37	chr1	147126436	147126436	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaagaggcagtctgcctcCggcctctgacaaaaaataaa	9	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147126436	A	A	147126436	3	1	229	1	0	0	0	0	1	0	0	0	165	652	23	1	653	1	ACP6	1	147126436	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	30630	147126436	102124185	105	173249											
LOC200030	200030	broad.mit.edu	37	chr1	148252936	148252936	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagggacctcaggctcccCagcataagaataggacactt	9	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148252936	A	A	148252936	1	1	229	0	1	0	0	0	0	0	0	0	8950	609	21	2		2	LOC200030	1	148252936	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1126500	148252936	100997685	106	173250											
SV2A	9900	broad.mit.edu	37	chr1	149884758	149884758	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggggataaggctggagccCcccatgtcttacctagcatg	13	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149884758	A	A	149884758	1	1	229	0	1	0	0	0	0	0	0	0	15535	638	22	2		2	SV2A	1	149884758	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1631822	149884758	99365863	107	173251											
OTUD7B	56957	broad.mit.edu	37	chr1	149915793	149915793	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctccccatccggttccCgctccctcctcctcagttct	7	20	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149915793	A	A	149915793	3	1	229	1	0	0	0	0	1	0	0	0	11413	652	23	1	40	1	OTUD7B	1	149915793	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	31035	149915793	99334828	108	173252											
OTUD7B	56957	broad.mit.edu	37	chr1	149916538	149916538	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctatacttgctccctcCgttaccaacagactcagctg	7	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149916538	A	A	149916538	4	1	229	1	0	0	0	0	0	1	0	0	11413	661	23	1	785	1	OTUD7B	1	149916538	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	745	149916538	99334083	109	173253											
OTUD7B	56957	broad.mit.edu	37	chr1	149931640	149931640	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attggtacctagatgcattcGgggttcacttgaggcaagct	12	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149931640	T	T	149931640	2	4	229	1	0	0	0	0	0	0	0	1	11413	1124	39	1		1	OTUD7B	1	149931640	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	15102	149931640	99318981	110	173254											
VPS45	11311	broad.mit.edu	37	chr1	150044161	150044161	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaaataaacaaatcaatGggtgaatgcttattactttt	6	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150044161	T	T	150044161	1	4	229	0	1	0	0	0	0	0	0	0	17338	1363	47	2		2	VPS45	1	150044161	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	112521	150044161	99206460	111	173255											
ANP32E	81611	broad.mit.edu	37	chr1	150198994	150198994	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcctcttctccctctccCaactctgaacctgcttcatc	2	19	5	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150198994	A	A	150198994	3	1	229	1	0	0	0	0	1	0	0	0	709	593	21	2	191	2	ANP32E	1	150198994	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	154833	150198994	99051627	112	173256											
CA14	23632	broad.mit.edu	37	chr1	150236032	150236032	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggatggggatctgaagtccCactgacccattttcttctct	10	11	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150236032	A	A	150236032	1	1	229	0	1	0	0	0	0	0	0	0	2541	609	21	2		2	CA14	1	150236032	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	37038	150236032	99014589	113	173257											
CA14	23632	broad.mit.edu	37	chr1	150236104	150236104	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccttataagataatgcGgggaggggaggtgtcctcac	14	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150236104	T	T	150236104	1	4	229	0	1	0	0	0	0	0	0	0	2541	1131	39	1		1	CA14	1	150236104	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	72	150236104	99014517	114	173258											
PRPF3	9129	broad.mit.edu	37	chr1	150298244	150298244	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgatgattctactctcCgatttgtggacaaactgttt	7	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150298244	A	A	150298244	2	1	229	1	0	0	0	0	0	0	0	1	12671	644	23	1		1	PRPF3	1	150298244	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	62140	150298244	98952377	115	173259											
RPRD2	23248	broad.mit.edu	37	chr1	150390155	150390155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaaatgcaatcatattcCgtgaatcatttgctgatgta	8	6	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150390155	A	A	150390155	3	1	229	1	0	0	0	0	1	0	0	0	13728	652	23	1	295	1	RPRD2	1	150390155	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	91911	150390155	98860466	116	173260											
RPRD2	23248	broad.mit.edu	37	chr1	150444155	150444155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtctctcatcttcccctGggctatttggtgccttcagc	8	15	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150444155	T	T	150444155	3	4	229	1	0	0	0	0	1	0	0	0	13728	1348	47	2	2773	2	RPRD2	1	150444155	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	54000	150444155	98806466	117	173261			1	139		3	3	88	N	G_C	1.523333e-05
RPRD2	23248	broad.mit.edu	37	chr1	150444217	150444217	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgaccggtcaccatcaccGagtaagaatgattcattttt	7	10	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150444217	T	T	150444217	2	4	229	1	0	0	0	0	0	0	0	1	13728	1045	37	3		3	RPRD2	1	150444217	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	62	150444217	98806404	118	173262			1	139		3	3	88	N	G_C	1.523333e-05
RPRD2	23248	broad.mit.edu	37	chr1	150444242	150444242	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgattcatttttcaccCctgactccaaccacaatagc	4	13	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150444242	A	A	150444242	3	1	229	1	0	0	0	0	1	0	0	0	13728	623	22	2	2860	2	RPRD2	1	150444242	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	25	150444242	98806379	119	173263			1	139		3	3	88	N	G_C	1.523333e-05
TARS2	80222	broad.mit.edu	37	chr1	150471511	150471511	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgggaccaggccgaacagGtgagtaggaggtagagaaat	16	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150471511	T	T	150471511	5	4	229	1	0	0	0	0	0	0	1	0	15679	1275	44	3	1586	3	TARS2	1	150471511	Splice_Site	SNP	G	TCGA-91-6836-01A-21D-1855-08	27269	150471511	98779110	120	173264											
ECM1	1893	broad.mit.edu	37	chr1	150483594	150483594	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactcgccagggtgagaccCtcaatttcctggagattgga	11	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150483594	A	A	150483594	3	1	229	1	0	0	0	0	1	0	0	0	4937	681	24	2	650	2	ECM1	1	150483594	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	12083	150483594	98767027	121	173265											
ECM1	1893	broad.mit.edu	37	chr1	150484963	150484963	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccttaccccaactatgacCgggacatcttgaccattgac	6	15	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150484963	A	A	150484963	2	1	229	1	0	0	0	0	0	0	0	1	4937	643	23	1		1	ECM1	1	150484963	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1369	150484963	98765658	122	173266											
ECM1	1893	broad.mit.edu	37	chr1	150485950	150485950	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggaagaatgagtcaccCcagagccctagagggtcaga	12	11	2	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150485950	A	A	150485950	1	1	229	0	1	0	0	0	0	0	0	0	4937	638	22	2		2	ECM1	1	150485950	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	987	150485950	98764671	123	173267											
SETDB1	9869	broad.mit.edu	37	chr1	150923260	150923260	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgtggtctctgccttcGgacaatgcaggagatagaac	11	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150923260	T	T	150923260	3	4	229	1	0	0	0	0	1	0	0	0	14251	1116	39	1	1953	1	SETDB1	1	150923260	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	437310	150923260	98327361	124	173268											
LASS2	29956	broad.mit.edu	37	chr1	150938739	150938739	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagctctctgtttcttccCggtcactgcgttcatcttct	7	14	6	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150938739	A	A	150938739	3	1	229	1	0	0	0	0	1	0	0	0	8711	652	23	1	118	1	LASS2	1	150938739	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	15479	150938739	98311882	125	173269											
LASS2	29956	broad.mit.edu	37	chr1	150939206	150939206	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgatttcttcagaacaGgagtgtagcctagctgccta	9	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150939206	T	T	150939206	1	4	229	0	1	0	0	0	0	0	0	0	8711	1015	35	2		2	LASS2	1	150939206	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	467	150939206	98311415	126	173270											
ANXA9	8416	broad.mit.edu	37	chr1	150956835	150956835	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgctgcagcccacagccCagtttgacgcccaggaattg	10	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150956835	A	A	150956835	3	1	229	1	0	0	0	0	1	0	0	0	727	595	21	2	360	2	ANXA9	1	150956835	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	17629	150956835	98293786	127	173271											
PRUNE	58497	broad.mit.edu	37	chr1	150990601	150990601	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcgagggatatgtaaaccAtaaagcaatattcaaacagt	7	6	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150990601	G	G	150990601	1	3	229	0	1	0	0	0	0	0	0	0	12746	232	8	5		5	PRUNE	1	150990601	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	33766	150990601	98260020	128	173272											
PRUNE	58497	broad.mit.edu	37	chr1	151006331	151006331	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacccctgaagctgacccCtgcctcaagtacccacccta	5	20	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151006331	A	A	151006331	3	1	229	1	0	0	0	0	1	0	0	0	12746	681	24	2	1013	2	PRUNE	1	151006331	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	15730	151006331	98244290	129	173273											
GABPB2	126626	broad.mit.edu	37	chr1	151070420	151070420	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccattcatcttcacgtcGggtgaggttgttaacctcgc	10	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151070420	T	T	151070420	2	4	229	1	0	0	0	0	0	0	0	1	6219	1103	39	1		1	GABPB2	1	151070420	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	64089	151070420	98180201	130	173274											
SEMA6C	10500	broad.mit.edu	37	chr1	151107999	151107999	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtttccaacctattccCgaatctgcagctgctacctc	6	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151107999	A	A	151107999	1	1	229	0	1	0	0	0	0	0	0	0	14154	667	23	1		1	SEMA6C	1	151107999	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	37579	151107999	98142622	131	173275											
SEMA6C	10500	broad.mit.edu	37	chr1	151114957	151114957	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aattgttcacagagatggggCaaggtaggtactgggcactc	14	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151114957	T	T	151114957	1	4	229	0	1	0	0	0	0	0	0	0	14154	725	25	4		4	SEMA6C	1	151114957	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	6958	151114957	98135664	132	173276											
TMOD4	29765	broad.mit.edu	37	chr1	151147041	151147041	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttagggatgagttttgGggagcaagtcagacctcccc	13	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151147041	T	T	151147041	1	4	229	0	1	0	0	0	0	0	0	0	16359	1247	43	2		2	TMOD4	1	151147041	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	32084	151147041	98103580	133	173277											
PSMD4	5710	broad.mit.edu	37	chr1	151239726	151239726	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacctcccaggtgtggatccCaacaatgaagccattcgaaa	8	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151239726	A	A	151239726	2	1	229	1	0	0	0	0	0	0	0	1	12806	581	21	2		2	PSMD4	1	151239726	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	92685	151239726	98010895	134	173278											
PI4KB	5298	broad.mit.edu	37	chr1	151276174	151276174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctaaagtataggtctccCgtctttcccctcctgcttgc	8	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151276174	A	A	151276174	1	1	229	0	1	0	0	0	0	0	0	0	11969	667	23	1		1	PI4KB	1	151276174	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	36448	151276174	97974447	135	173279											
PI4KB	5298	broad.mit.edu	37	chr1	151288004	151288004	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcatcctgtctccatgCagccctctaccaccttttgt	8	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151288004	A	A	151288004	1	1	229	0	1	0	0	0	0	0	0	0	11969	725	25	3		3	PI4KB	1	151288004	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11830	151288004	97962617	136	173280											
RFX5	5993	broad.mit.edu	37	chr1	151315028	151315028	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcccatggtaaccttgaGgactgggcagattccatggc	12	11	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151315028	T	T	151315028	2	4	229	1	0	0	0	0	0	0	0	1	13374	987	35	2		2	RFX5	1	151315028	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	27024	151315028	97935593	137	173281											
SELENBP1	8991	broad.mit.edu	37	chr1	151337182	151337182	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcatcacagagccttccCtggtggaaaagggaatgggg	15	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151337182	A	A	151337182	1	1	229	0	1	0	0	0	0	0	0	0	14127	695	24	2		2	SELENBP1	1	151337182	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	22154	151337182	97913439	138	173282											
SELENBP1	8991	broad.mit.edu	37	chr1	151339214	151339214	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccagcctccacatcagcGgggttgaagccatctcgtaa	9	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151339214	T	T	151339214	2	4	229	1	0	0	0	0	0	0	0	1	14127	1103	39	1		1	SELENBP1	1	151339214	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2032	151339214	97911407	139	173283											
PSMB4	5692	broad.mit.edu	37	chr1	151373711	151373711	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggttttcccccaatctccCtagcctctgctgcgagaagt	8	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151373711	A	A	151373711	1	1	229	0	1	0	0	0	0	0	0	0	12785	696	24	2		2	PSMB4	1	151373711	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	34497	151373711	97876910	140	173284											
PSMB4	5692	broad.mit.edu	37	chr1	151373769	151373769	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctaagccagaccgaggccCgcgacttagtagaacgctgc	12	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151373769	A	A	151373769	3	1	229	1	0	0	0	0	1	0	0	0	12785	652	23	1	649	1	PSMB4	1	151373769	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	58	151373769	97876852	141	173285											
PSMB4	5692	broad.mit.edu	37	chr1	151373829	151373829	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgcccgttcttacaacCgggtgagggatgtgctggga	16	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151373829	A	A	151373829	2	1	229	1	0	0	0	0	0	0	0	1	12785	643	23	1		1	PSMB4	1	151373829	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	60	151373829	97876792	142	173286											
POGZ	23126	broad.mit.edu	37	chr1	151380489	151380489	+	Intron	DEL	A	-	-													cagagtgagaccctgtcttcAaaaaaaaaaaaaaaaaaaga							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	151380489	-	-	151380489	6	5	229	0	1	1	0	1	0	0	0	0	12281	145	5	0		0	POGZ	1	151380489	Intron	DEL	A	TCGA-91-6836-01A-21D-1855-08	6660	151380489	97870132	143	173287											
POGZ	23126	broad.mit.edu	37	chr1	151381039	151381039	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagttcgtggctgccctcGggaagcccggattgtcacct	12	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151381039	T	T	151381039	2	4	229	1	0	0	0	0	0	0	0	1	12281	1124	39	1		1	POGZ	1	151381039	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	550	151381039	97869582	144	173288											
POGZ	23126	broad.mit.edu	37	chr1	151400943	151400943	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgagctcacctataacaCattctccctgcctttactgg	6	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151400943	A	A	151400943	1	1	229	0	1	0	0	0	0	0	0	0	12281	493	17	3		3	POGZ	1	151400943	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	19904	151400943	97849678	145	173289											
POGZ	23126	broad.mit.edu	37	chr1	151413464	151413464	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtcgctgttctgtgcccCgctgctactaacggtggtgg	13	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151413464	A	A	151413464	3	1	229	1	0	0	0	0	1	0	0	0	12281	652	23	1	4091	1	POGZ	1	151413464	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	12521	151413464	97837157	146	173290											
TUFT1	7286	broad.mit.edu	37	chr1	151530033	151530033	+	Intron	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	accgggagctggcagacaagGatgtgcccaatcttcatgtc	12	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	151530033	C	C	151530033	1	2	229	0	1	0	0	0	0	0	0	0	16898	1189	41	4		4	TUFT1	1	151530033	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	116569	151530033	97720588	147	173291											
TDRKH	11022	broad.mit.edu	37	chr1	151748754	151748754	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcttcaggctgtatgtgGggaggaggagaaaggcagag	18	4	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151748754	T	T	151748754	1	4	229	0	1	0	0	0	0	0	0	0	15859	1247	43	2		2	TDRKH	1	151748754	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	218721	151748754	97501867	148	173292											
THEM4	117145	broad.mit.edu	37	chr1	151847244	151847244	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtattcagaaggctgtttcGgaaggtcactgttggcaggc	14	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151847244	T	T	151847244	1	4	229	0	1	0	0	0	0	0	0	0	15981	1131	39	1		1	THEM4	1	151847244	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	98490	151847244	97403377	149	173293											
TCHH	7062	broad.mit.edu	37	chr1	152080051	152080051	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggatgtgttcttccCgtaatttcctttcccgttcc	10	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152080051	A	A	152080051	3	1	229	1	0	0	0	0	1	0	0	0	15822	652	23	1	193	1	TCHH	1	152080051	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	232807	152080051	97170570	150	173294											
TCHH	7062	broad.mit.edu	37	chr1	152080220	152080220	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaagttggagctgctcttCttcccagcgatactttccgt	8	13	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152080220	T	T	152080220	3	4	229	1	0	0	0	0	1	0	0	0	15822	922	32	4	362	4	TCHH	1	152080220	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	169	152080220	97170401	151	173295											
HRNR	388697	broad.mit.edu	37	chr1	152188171	152188171	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggagccagactcatatggGccacggctggaagaccaccc	12	15	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152188171	T	T	152188171	2	4	229	1	0	0	0	0	0	0	0	1	7426	1190	42	3		3	HRNR	1	152188171	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	107951	152188171	97062450	152	173296											
HRNR	388697	broad.mit.edu	37	chr1	152192778	152192778	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatcgaccaaagccagtccCatgttggccggagctgggag	14	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152192778	A	A	152192778	3	1	229	1	0	0	0	0	1	0	0	0	7426	594	21	2	7229	2	HRNR	1	152192778	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4607	152192778	97057843	153	173297											
HRNR	388697	broad.mit.edu	37	chr1	152195434	152195434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgctatggaaaccatcacGgatctgcttttgaccttatc	7	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152195434	T	T	152195434	1	4	229	0	1	0	0	0	0	0	0	0	7426	1131	39	1		1	HRNR	1	152195434	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2656	152195434	97055187	154	173298											
FLG	2312	broad.mit.edu	37	chr1	152275394	152275394	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgagagtgtctaaaccCggattcaccataatcataat	8	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152275394	A	A	152275394	3	1	229	1	0	0	0	0	1	0	0	0	5979	652	23	1	221	1	FLG	1	152275394	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	79960	152275394	96975227	155	173299											
FLG	2312	broad.mit.edu	37	chr1	152275730	152275730	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcagactcagatcgccTctcagagtcctctgggtatg	12	11	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152275730	A	A	152275730	3	1	229	1	0	0	0	0	1	0	0	0	5979	1550	54	5	557	5	FLG	1	152275730	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	336	152275730	96974891	156	173300											
FLG	2312	broad.mit.edu	37	chr1	152276597	152276597	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctctctgcagagtgccCgtgaccggctctgtcttcgt	13	13	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152276597	A	A	152276597	3	1	229	1	0	0	0	0	1	0	0	0	5979	652	23	1	1424	1	FLG	1	152276597	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	867	152276597	96974024	157	173301											
FLG	2312	broad.mit.edu	37	chr1	152279018	152279018	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgaatggtgtcctgacCgtcttgggatgctgagtgcc	13	11	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152279018	A	A	152279018	3	1	229	1	0	0	0	0	1	0	0	0	5979	652	23	1	3845	1	FLG	1	152279018	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2421	152279018	96971603	158	173302											
FLG	2312	broad.mit.edu	37	chr1	152280365	152280365	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctgactgctggtggtGggatccgtgtctctctcctg	14	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152280365	T	T	152280365	3	4	229	1	0	0	0	0	1	0	0	0	5979	1348	47	2	5192	2	FLG	1	152280365	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1347	152280365	96970256	159	173303											
FLG2	388698	broad.mit.edu	37	chr1	152325410	152325410	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgtccatgagtagttcCgtgtctctcatgaactgtga	9	9	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152325410	A	A	152325410	4	1	229	1	0	0	0	0	0	1	0	0	5980	661	23	1	2327	1	FLG2	1	152325410	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	45045	152325410	96925211	160	173304											
FLG2	388698	broad.mit.edu	37	chr1	152328546	152328546	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtggattgacctgagccCaacccatgttgtccaaagcc	9	14	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152328546	A	A	152328546	3	1	229	1	0	0	0	0	1	0	0	0	5980	593	21	2	5463	2	FLG2	1	152328546	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3136	152328546	96922075	161	173305											
CRNN	49860	broad.mit.edu	37	chr1	152383179	152383179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcataatgctgccctttccCcgcccttcccacttcagtgc	5	19	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152383179	A	A	152383179	3	1	229	1	0	0	0	0	1	0	0	0	3924	623	22	2	1112	2	CRNN	1	152383179	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	54633	152383179	96867442	162	173306											
LCE2C	353140	broad.mit.edu	37	chr1	152648367	152648367	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	caggttactgatgtgattgtAttatctaaatatcattcttc	6	6	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	152648367	G	G	152648367	1	3	229	0	1	0	0	0	0	0	0	0	8739	464	16	5		5	LCE2C	1	152648367	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	265188	152648367	96602254	163	173307											
LCE2A	353139	broad.mit.edu	37	chr1	152671480	152671480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgacctcagtgcccagccCcatgcccacctccagtctct	7	21	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152671480	A	A	152671480	3	1	229	1	0	0	0	0	1	0	0	0	8737	623	22	2	105	2	LCE2A	1	152671480	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	23113	152671480	96579141	164	173308											
KPRP	448834	broad.mit.edu	37	chr1	152732365	152732365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagggccaggctgcatccCaatctcaaacttcctctgtt	8	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152732365	A	A	152732365	3	1	229	1	0	0	0	0	1	0	0	0	8507	595	21	2	303	2	KPRP	1	152732365	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	60885	152732365	96518256	165	173309											
LCE1E	353135	broad.mit.edu	37	chr1	152759848	152759848	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaagtgccctcccaagtgtCccacccccaaatgccctcca	5	21	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152759848	T	T	152759848	3	4	229	1	0	0	0	0	1	0	0	0	8735	855	30	4	75	4	LCE1E	1	152759848	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	27483	152759848	96490773	166	173310											
LOR	4014	broad.mit.edu	37	chr1	153233317	153233317	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgaaggagccctgggaGgatggcgatgttgcctatgg	16	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153233317	T	T	153233317	1	4	229	0	1	0	0	0	0	0	0	0	8984	1015	35	2		2	LOR	1	153233317	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	473469	153233317	96017304	167	173311											
S100A14	57402	broad.mit.edu	37	chr1	153587692	153587692	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggtactggctgaggtgGggtgtgctccgtccataccg	16	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153587692	T	T	153587692	1	4	229	0	1	0	0	0	0	0	0	0	13887	1247	43	2		2	S100A14	1	153587692	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	354375	153587692	95662929	168	173312											
ILF2	3608	broad.mit.edu	37	chr1	153640110	153640110	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccctttttataggatccCacctgtcgaacttcttcaat	5	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153640110	A	A	153640110	2	1	229	1	0	0	0	0	0	0	0	1	7781	581	21	2		2	ILF2	1	153640110	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	52418	153640110	95610511	169	173313											
SLC27A3	11000	broad.mit.edu	37	chr1	153751968	153751968	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaaccggccacttccccCgccggcccctcaccccatat	7	21	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153751968	A	A	153751968	1	1	229	0	1	0	0	0	0	0	0	0	14641	667	23	1		1	SLC27A3	1	153751968	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	111858	153751968	95498653	170	173314											
GATAD2B	57459	broad.mit.edu	37	chr1	153785904	153785904	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatacaaagggttcaaccCgcagaagtgaggcacagctt	10	11	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153785904	A	A	153785904	3	1	229	1	0	0	0	0	1	0	0	0	6323	652	23	1	556	1	GATAD2B	1	153785904	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	33936	153785904	95464717	171	173315											
DENND4B	9909	broad.mit.edu	37	chr1	153910247	153910247	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtaaggcaggctcctcGggaggtgtgataaagacagt	15	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153910247	T	T	153910247	2	4	229	1	0	0	0	0	0	0	0	1	4474	1103	39	1		1	DENND4B	1	153910247	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	124343	153910247	95340374	172	173316											
CRTC2	200186	broad.mit.edu	37	chr1	153924904	153924904	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttcacaggaccgaggtcGggaagaggatgaggatagct	16	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153924904	T	T	153924904	2	4	229	1	0	0	0	0	0	0	0	1	3932	1124	39	1		1	CRTC2	1	153924904	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	14657	153924904	95325717	173	173317											
SLC39A1	27173	broad.mit.edu	37	chr1	153935099	153935099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagcaccagggccccCaacttcacctccagccccac	7	21	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153935099	A	A	153935099	3	1	229	1	0	0	0	0	1	0	0	0	14726	593	21	2	893	2	SLC39A1	1	153935099	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	10195	153935099	95315522	174	173318											
JTB	10899	broad.mit.edu	37	chr1	153949471	153949471	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgacagcttctcttcctgCacgggagcctctgcttggct	10	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153949471	A	A	153949471	2	1	229	1	0	0	0	0	0	0	0	1	8037	697	25	3		3	JTB	1	153949471	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	14372	153949471	95301150	175	173319											
RAB13	5872	broad.mit.edu	37	chr1	153954901	153954901	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacttgagcaagatgtccCgggccagggaactaaaagcc	12	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	153954901	A	A	153954901	3	1	229	1	0	0	0	0	1	0	0	0	13007	652	23	1	119	1	RAB13	1	153954901	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5430	153954901	95295720	176	173320											
NUP210L	91181	broad.mit.edu	37	chr1	153982511	153982511	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggaatgtctagcaaagTattactgaactgtacatggc	10	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	153982511	C	C	153982511	3	2	229	1	0	0	0	0	1	0	0	0	10856	1638	57	5	823	5	NUP210L	1	153982511	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	27610	153982511	95268110	177	173321											
UBAP2L	9898	broad.mit.edu	37	chr1	154229622	154229622	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacagtctctgcacctccCccagtggtcagtgtctcctc	8	17	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154229622	A	A	154229622	2	1	229	1	0	0	0	0	0	0	0	1	16964	610	22	2		2	UBAP2L	1	154229622	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	247111	154229622	95020999	178	173322											
UBAP2L	9898	broad.mit.edu	37	chr1	154238973	154238973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgtctgtttcctcctcccCcaggtgtttcagtcacctcc	6	18	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154238973	A	A	154238973	1	1	229	0	1	0	0	0	0	0	0	0	16964	638	22	2		2	UBAP2L	1	154238973	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	9351	154238973	95011648	179	173323											
UBAP2L	9898	broad.mit.edu	37	chr1	154242713	154242713	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagccagaccagctccatccCgcagaagccccagaccaaca	7	18	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154242713	A	A	154242713	3	1	229	1	0	0	0	0	1	0	0	0	16964	652	23	1	3362	1	UBAP2L	1	154242713	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3740	154242713	95007908	180	173324											
HAX1	10456	broad.mit.edu	37	chr1	154246043	154246043	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagcatcttcagcgatatGggggcctggaccttgccttc	11	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154246043	T	T	154246043	3	4	229	1	0	0	0	0	1	0	0	0	7041	1348	47	2	291	2	HAX1	1	154246043	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3330	154246043	95004578	181	173325											
HAX1	10456	broad.mit.edu	37	chr1	154247852	154247852	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacattcggaatatggtgGggacttctctttgtagatag	12	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154247852	T	T	154247852	1	4	229	0	1	0	0	0	0	0	0	0	7041	1247	43	2		2	HAX1	1	154247852	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1809	154247852	95002769	182	173326											
AQP10	89872	broad.mit.edu	37	chr1	154295570	154295570	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctgctttctgtgcttcGggagccacctatgttctcta	9	12	3	0	rs138299081		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154295570	T	T	154295570	2	4	229	1	0	0	0	0	0	0	0	1	824	1103	39	1		1	AQP10	1	154295570	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	47718	154295570	94955051	183	173327											
ATP8B2	57198	broad.mit.edu	37	chr1	154306939	154306939	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagcccagaggcagatGtgttatttggctttcccagc	12	10	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154306939	T	T	154306939	1	4	229	0	1	0	0	0	0	0	0	0	1199	1392	48	3		3	ATP8B2	1	154306939	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	11369	154306939	94943682	184	173328											
ATP8B2	57198	broad.mit.edu	37	chr1	154313297	154313297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcacctcctcttcttccCgacccaagcctcacctcttg	7	19	4	0	rs2297608	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154313297	A	A	154313297	1	1	229	0	1	0	0	0	0	0	0	0	1199	667	23	1		1	ATP8B2	1	154313297	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	6358	154313297	94937324	185	173329											
ATP8B2	57198	broad.mit.edu	37	chr1	154316291	154316291	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacccagtctacagtgcaGgattattcattgtcgccctc	7	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154316291	T	T	154316291	1	4	229	0	1	0	0	0	0	0	0	0	1199	1015	35	2		2	ATP8B2	1	154316291	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2994	154316291	94934330	186	173330											
IL6R	3570	broad.mit.edu	37	chr1	154407078	154407078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgccagttagcagtccCggagggagacagctctttct	11	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154407078	A	A	154407078	3	1	229	1	0	0	0	0	1	0	0	0	7772	652	23	1	556	1	IL6R	1	154407078	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	90787	154407078	94843543	187	173331											
IL6R	3570	broad.mit.edu	37	chr1	154437502	154437502	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcctttgagccgaaacctGggcgcgccaggccaccaggg	14	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154437502	T	T	154437502	1	4	229	0	1	0	0	0	0	0	0	0	7772	1363	47	2		2	IL6R	1	154437502	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	30424	154437502	94813119	188	173332											
SHE	126669	broad.mit.edu	37	chr1	154461820	154461820	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggggatctttggaacccCgtcgtctaatttctgaaaaa	9	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154461820	A	A	154461820	3	1	229	1	0	0	0	0	1	0	0	0	14389	652	23	1	772	1	SHE	1	154461820	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	24318	154461820	94788801	189	173333											
SHE	126669	broad.mit.edu	37	chr1	154474139	154474139	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctccgtggcccgggagtTtttgcggcccttgcccgcgg	14	16	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	154474139	C	C	154474139	3	2	229	1	0	0	0	0	1	0	0	0	14389	1841	64	5	1147	5	SHE	1	154474139	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	12319	154474139	94776482	190	173334											
ADAR	103	broad.mit.edu	37	chr1	154557439	154557439	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagagtctcagtagatccCtgcggtaacggaaggagcag	15	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154557439	A	A	154557439	3	1	229	1	0	0	0	0	1	0	0	0	281	681	24	2	160	2	ADAR	1	154557439	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	83300	154557439	94693182	191	173335											
ADAR	103	broad.mit.edu	37	chr1	154560548	154560548	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtagagacttggggtccCtggaccttgcagagcctttt	12	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154560548	A	A	154560548	1	1	229	0	1	0	0	0	0	0	0	0	281	696	24	2		2	ADAR	1	154560548	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3109	154560548	94690073	192	173336											
ADAR	103	broad.mit.edu	37	chr1	154560619	154560619	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accgttctccaccttggtgcGgagctttccttgtttgggat	11	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154560619	T	T	154560619	3	4	229	1	0	0	0	0	1	0	0	0	281	1116	39	1	699	1	ADAR	1	154560619	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	71	154560619	94690002	193	173337											
KCNN3	3782	broad.mit.edu	37	chr1	154705740	154705740	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagaggcagcagtgacGgtggctcacacagatctctt	14	9	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154705740	A	A	154705740	1	1	229	0	1	0	0	0	0	0	0	0	8150	1131	39	4		4	KCNN3	1	154705740	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	145121	154705740	94544881	194	173338											
KCNN3	3782	broad.mit.edu	37	chr1	154744825	154744825	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tacaggatgcgctcgtaggtCatggctatccgccagtcatc	11	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154744825	A	A	154744825	3	1	229	1	0	0	0	0	1	0	0	0	8150	826	29	3	1145	3	KCNN3	1	154744825	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	39085	154744825	94505796	195	173339											
KCNN3	3782	broad.mit.edu	37	chr1	154821555	154821555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaacaaatgtttgcttccCgaggtggccactggggaatc	12	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154821555	A	A	154821555	1	1	229	0	1	0	0	0	0	0	0	0	8150	667	23	1		1	KCNN3	1	154821555	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	76730	154821555	94429066	196	173340											
PBXIP1	57326	broad.mit.edu	37	chr1	154918537	154918537	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccttgggggttccttcGggccctgtcgcttgccctcc	11	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154918537	T	T	154918537	3	4	229	1	0	0	0	0	1	0	0	0	11590	1116	39	1	590	1	PBXIP1	1	154918537	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	96982	154918537	94332084	197	173341											
PBXIP1	57326	broad.mit.edu	37	chr1	154918636	154918636	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtcctcctgacctcccCagttcttcttcctttcccgg	5	20	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154918636	A	A	154918636	3	1	229	1	0	0	0	0	1	0	0	0	11590	595	21	2	689	2	PBXIP1	1	154918636	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	99	154918636	94331985	198	173342											
SHC1	6464	broad.mit.edu	37	chr1	154940601	154940601	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccacaatcctagcacccCcacttctctaatcaatgtct	2	18	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154940601	A	A	154940601	1	1	229	0	1	0	0	0	0	0	0	0	14383	638	22	2		2	SHC1	1	154940601	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	21965	154940601	94310020	199	173343											
SHC1	6464	broad.mit.edu	37	chr1	154940750	154940750	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatctgagaattagggcagGggatgaagaaggaagggaat	17	2	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154940750	T	T	154940750	1	4	229	0	1	0	0	0	0	0	0	0	14383	1247	43	2		2	SHC1	1	154940750	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	149	154940750	94309871	200	173344											
FLAD1	80308	broad.mit.edu	37	chr1	154962691	154962691	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatatccgcagcatctcccCtttccctgagctggaacagt	8	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154962691	A	A	154962691	3	1	229	1	0	0	0	0	1	0	0	0	5977	681	24	2	1476	2	FLAD1	1	154962691	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	21941	154962691	94287930	201	173345											
ZBTB7B	51043	broad.mit.edu	37	chr1	154987589	154987589	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctagaagctcccagcccGgacgaggatgactgtgagcg	16	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154987589	T	T	154987589	2	4	229	1	0	0	0	0	0	0	0	1	17680	1103	39	1		1	ZBTB7B	1	154987589	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	24898	154987589	94263032	202	173346											
DCST2	127579	broad.mit.edu	37	chr1	155001742	155001742	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccctgcagctggtgccGggccaggtcaagcacccaga	12	17	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155001742	T	T	155001742	2	4	229	1	0	0	0	0	0	0	0	1	4336	1115	39	1		1	DCST2	1	155001742	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	14153	155001742	94248879	203	173347											
DCST1	149095	broad.mit.edu	37	chr1	155018567	155018567	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagggcagagggcccttGggcttcctaactgtgtggac	16	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155018567	T	T	155018567	1	4	229	0	1	0	0	0	0	0	0	0	4335	1363	47	2		2	DCST1	1	155018567	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	16825	155018567	94232054	204	173348											
TRIM46	80128	broad.mit.edu	37	chr1	155149421	155149421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctagggccttatgtgccCagaccacaaggaagaggtga	12	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155149421	A	A	155149421	3	1	229	1	0	0	0	0	1	0	0	0	16646	594	21	2	697	2	TRIM46	1	155149421	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	130854	155149421	94101200	205	173349											
THBS3	7059	broad.mit.edu	37	chr1	155169836	155169836	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgcaagcatctcccacccCgtcctcatccctgtctgtct	6	19	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155169836	A	A	155169836	3	1	229	1	0	0	0	0	1	0	0	0	15978	652	23	1	1129	1	THBS3	1	155169836	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	20415	155169836	94080785	206	173350											
THBS3	7059	broad.mit.edu	37	chr1	155170710	155170710	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caacattcttgatcccatccCcatcagcatcatcatcacac	2	17	5	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155170710	A	A	155170710	3	1	229	1	0	0	0	0	1	0	0	0	15978	623	22	2	1388	2	THBS3	1	155170710	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	874	155170710	94079911	207	173351											
THBS3	7059	broad.mit.edu	37	chr1	155171154	155171154	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggccctaaacatagccCtactcctttccccagaccct	4	20	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155171154	T	T	155171154	1	4	229	0	1	0	0	0	0	0	0	0	15978	696	24	4		4	THBS3	1	155171154	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	444	155171154	94079467	208	173352											
THBS3	7059	broad.mit.edu	37	chr1	155174702	155174702	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcactcagggctcctaccCgggccatggacccacccaga	9	18	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155174702	A	A	155174702	3	1	229	1	0	0	0	0	1	0	0	0	15978	652	23	1	2360	1	THBS3	1	155174702	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3548	155174702	94075919	209	173353											
RUSC1	23623	broad.mit.edu	37	chr1	155296629	155296629	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctggcccagagccttcGggggacttccaaggaagctg	15	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155296629	T	T	155296629	3	4	229	1	0	0	0	0	1	0	0	0	13861	1116	39	1	2277	1	RUSC1	1	155296629	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	121927	155296629	93953992	210	173354											
RUSC1	23623	broad.mit.edu	37	chr1	155297964	155297964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatctagctggctgccccCgacagtgagtgtgttggctc	12	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155297964	A	A	155297964	3	1	229	1	0	0	0	0	1	0	0	0	13861	652	23	1	2599	1	RUSC1	1	155297964	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1335	155297964	93952657	211	173355											
MSTO1	55154	broad.mit.edu	37	chr1	155584473	155584473	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctccccggtgccagggcgCctgttgggtttggtcctgtg	16	13	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155584473	T	T	155584473	1	4	229	0	1	0	0	0	0	0	0	0	9988	754	26	4		4	MSTO1	1	155584473	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	286509	155584473	93666148	212	173356											
YY1AP1	55249	broad.mit.edu	37	chr1	155650064	155650064	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagttagcaaatttcttttGtcattatattctttcccagg	6	8	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155650064	C	C	155650064	1	2	229	0	1	0	0	0	0	0	0	0	17635	1392	48	4		4	YY1AP1	1	155650064	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	65591	155650064	93600557	213	173357											
DAP3	7818	broad.mit.edu	37	chr1	155671913	155671913	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgtaaaaaaaaaaaaaTtaaaaattaaaaaaattgat	3	2	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155671913	A	A	155671913	1	1	229	0	1	0	0	0	0	0	0	0	4267	1508	52	5		5	DAP3	1	155671913	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	21849	155671913	93578708	214	173358											
DAP3	7818	broad.mit.edu	37	chr1	155706752	155706752	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggaaggatttgatgccCtggatccctttattcccatc	8	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155706752	A	A	155706752	3	1	229	1	0	0	0	0	1	0	0	0	4267	680	24	2	1051	2	DAP3	1	155706752	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	34839	155706752	93543869	215	173359											
DAP3	7818	broad.mit.edu	37	chr1	155708002	155708002	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cctaagtaacgcgaacccctCgctgctggagcggcactgtg	12	14	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155708002	A	A	155708002	4	1	229	1	0	0	0	0	0	1	0	0	4267	893	31	3	1212	3	DAP3	1	155708002	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1250	155708002	93542619	216	173360											
GON4L	54856	broad.mit.edu	37	chr1	155784365	155784365	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaacatggtgaacaccCgtctctgctaaaaatacaaa	7	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155784365	A	A	155784365	1	1	229	0	1	0	0	0	0	0	0	0	6636	667	23	1		1	GON4L	1	155784365	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	76363	155784365	93466256	217	173361											
SYT11	23208	broad.mit.edu	37	chr1	155837814	155837814	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggtggtgtgtgtctcGgtgaccgtctttgtctggtc	16	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155837814	A	A	155837814	2	1	229	1	0	0	0	0	0	0	0	1	15586	1103	39	4		4	SYT11	1	155837814	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	53449	155837814	93412807	218	173362											
RIT1	6016	broad.mit.edu	37	chr1	155880456	155880456	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttacctaccactcttccCtacaccaccagcacccagca	3	19	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155880456	A	A	155880456	3	1	229	1	0	0	0	0	1	0	0	0	13497	681	24	2	582	2	RIT1	1	155880456	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	42642	155880456	93370165	219	173363											
RAB25	57111	broad.mit.edu	37	chr1	156035812	156035812	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggggttgagttctccaccCgcactgtgatgttgggcacc	13	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156035812	A	A	156035812	3	1	229	1	0	0	0	0	1	0	0	0	13020	652	23	1	160	1	RAB25	1	156035812	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	155356	156035812	93214809	220	173364											
SEMA4A	64218	broad.mit.edu	37	chr1	156144922	156144922	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgtctggagggtgcccCgagccaactgtagtgtctat	15	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156144922	A	A	156144922	2	1	229	1	0	0	0	0	0	0	0	1	14144	644	23	1		1	SEMA4A	1	156144922	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	109110	156144922	93105699	221	173365											
SMG5	23381	broad.mit.edu	37	chr1	156222251	156222251	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtaccgaatcccatcccGggcccctgggtgttccttct	10	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156222251	T	T	156222251	2	4	229	1	0	0	0	0	0	0	0	1	14910	1115	39	1		1	SMG5	1	156222251	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	77329	156222251	93028370	222	173366											
SMG5	23381	broad.mit.edu	37	chr1	156247101	156247101	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcactcaccctcccttaccCtgttcatctcacttggctct	4	19	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156247101	A	A	156247101	1	1	229	0	1	0	0	0	0	0	0	0	14910	696	24	2		2	SMG5	1	156247101	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	24850	156247101	93003520	223	173367											
CCT3	7203	broad.mit.edu	37	chr1	156286994	156286994	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtcttccggactctgcGgatggctgtgatattggccc	13	11	3	1	rs150397752		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156286994	T	T	156286994	3	4	229	1	0	0	0	0	1	0	0	0	2984	1116	39	1	720	1	CCT3	1	156286994	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	39893	156286994	92963627	224	173368											
C1orf182	128229	broad.mit.edu	37	chr1	156314498	156314498	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacaacaaagctgccctcGggtaaggatgtagggagggt	15	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156314498	T	T	156314498	2	4	229	1	0	0	0	0	0	0	0	1	2038	1130	39	1		1	C1orf182	1	156314498	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	27504	156314498	92936123	225	173369											
IQGAP3	128239	broad.mit.edu	37	chr1	156500998	156500998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatctccttgagggtgtccCcaggatggaactgtatgata	13	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156500998	A	A	156500998	3	1	229	1	0	0	0	0	1	0	0	0	7886	623	22	2	774	2	IQGAP3	1	156500998	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	186500	156500998	92749623	226	173370											
IQGAP3	128239	broad.mit.edu	37	chr1	156532897	156532897	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagccactcaacttttcGgtccctgcaacccaagacta	5	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156532897	T	T	156532897	1	4	229	0	1	0	0	0	0	0	0	0	7886	1131	39	1		1	IQGAP3	1	156532897	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	31899	156532897	92717724	227	173371											
IQGAP3	128239	broad.mit.edu	37	chr1	156542351	156542351	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttccaggtttgaatctccCgccgttgggccaccgcccct	9	17	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156542351	A	A	156542351	1	1	229	0	1	0	0	0	0	0	0	0	7886	667	23	1		1	IQGAP3	1	156542351	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	9454	156542351	92708270	228	173372											
APOA1BP	128240	broad.mit.edu	37	chr1	156563889	156563889	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgagggaaggtgggtGggtattcttcccaataaaga	15	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156563889	T	T	156563889	1	4	229	0	1	0	0	0	0	0	0	0	783	1363	47	2		2	APOA1BP	1	156563889	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	21538	156563889	92686732	229	173373											
BCAN	63827	broad.mit.edu	37	chr1	156617925	156617925	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattaggagtgagaggttccCaggggacaatttcctactcc	12	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156617925	A	A	156617925	1	1	229	0	1	0	0	0	0	0	0	0	1350	609	21	2		2	BCAN	1	156617925	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	54036	156617925	92632696	230	173374											
NES	10763	broad.mit.edu	37	chr1	156641484	156641484	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccaggttctcttgtccCgcagacttcagtgattctag	9	11	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156641484	A	A	156641484	2	1	229	1	0	0	0	0	0	0	0	1	10432	639	23	1		1	NES	1	156641484	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	23559	156641484	92609137	231	173375											
MRPL24	79590	broad.mit.edu	37	chr1	156707524	156707524	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgtgtggagactcgtaccCgctctcctgcttcagtaaat	9	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156707524	A	A	156707524	3	1	229	1	0	0	0	0	1	0	0	0	9884	652	23	1	230	1	MRPL24	1	156707524	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	66040	156707524	92543097	232	173376											
MRPL24	79590	broad.mit.edu	37	chr1	156707813	156707813	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccctctgcccagagcccCgttgcttgcctgtccatagg	9	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156707813	A	A	156707813	1	1	229	0	1	0	0	0	0	0	0	0	9884	667	23	1		1	MRPL24	1	156707813	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	289	156707813	92542808	233	173377											
MRPL24	79590	broad.mit.edu	37	chr1	156708253	156708253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaagatacgaaggttaGggagggggatccttgcccag	18	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156708253	T	T	156708253	1	4	229	0	1	0	0	0	0	0	0	0	9884	1015	35	2		2	MRPL24	1	156708253	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	440	156708253	92542368	234	173378											
PEAR1	375033	broad.mit.edu	37	chr1	156876543	156876543	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccttctggtctgcagccccCgaactgccttcagccctgta	8	18	3	0	rs150756495	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156876543	A	A	156876543	3	1	229	1	0	0	0	0	1	0	0	0	11806	652	23	1	533	1	PEAR1	1	156876543	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	168290	156876543	92374078	235	173379											
PEAR1	375033	broad.mit.edu	37	chr1	156877327	156877327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaggtgggggttgtggGggcagtccttggaggcaaga	20	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156877327	T	T	156877327	1	4	229	0	1	0	0	0	0	0	0	0	11806	1247	43	2		2	PEAR1	1	156877327	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	784	156877327	92373294	236	173380											
ARHGEF11	9826	broad.mit.edu	37	chr1	156911843	156911843	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatagcagcacgcaccacccCgtactgagcccactggaaca	9	16	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156911843	A	A	156911843	1	1	229	0	1	0	0	0	0	0	0	0	898	667	23	1		1	ARHGEF11	1	156911843	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	34516	156911843	92338778	237	173381											
ARHGEF11	9826	broad.mit.edu	37	chr1	156925534	156925534	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttcccaatgtatttgaGgatagggtttcgcttcttgt	12	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156925534	T	T	156925534	3	4	229	1	0	0	0	0	1	0	0	0	898	1000	35	2	3047	2	ARHGEF11	1	156925534	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	13691	156925534	92325087	238	173382											
ETV3	2117	broad.mit.edu	37	chr1	157106152	157106152	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccggctttcattttcaccCgcctgctgagagacacaagc	9	14	2	2	rs2231852	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157106152	A	A	157106152	1	1	229	0	1	0	0	0	0	0	0	0	5321	667	23	1		1	ETV3	1	157106152	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	180618	157106152	92144469	239	173383											
FCRL5	83416	broad.mit.edu	37	chr1	157485555	157485555	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtagatgataggggaaccCtaggaggcaagagcacatgc	15	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157485555	A	A	157485555	1	1	229	0	1	0	0	0	0	0	0	0	5855	695	24	2		2	FCRL5	1	157485555	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	379403	157485555	91765066	240	173384											
FCRL5	83416	broad.mit.edu	37	chr1	157489647	157489647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggctcacttagaaactgCcaggagttgctgtcactgaa	10	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157489647	T	T	157489647	1	4	229	0	1	0	0	0	0	0	0	0	5855	754	26	4		4	FCRL5	1	157489647	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4092	157489647	91760974	241	173385											
FCRL5	83416	broad.mit.edu	37	chr1	157497308	157497308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcctgacaggatgtcacaCagcaaatgactctagaaact	8	10	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157497308	A	A	157497308	1	1	229	0	1	0	0	0	0	0	0	0	5855	493	17	3		3	FCRL5	1	157497308	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7661	157497308	91753313	242	173386											
FCRL4	83417	broad.mit.edu	37	chr1	157550198	157550198	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagctctttctcaatgacttCatgtaacaggagctatctaa	7	9	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157550198	T	T	157550198	1	4	229	0	1	0	0	0	0	0	0	0	5854	841	29	4		4	FCRL4	1	157550198	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	52890	157550198	91700423	243	173387											
FCRL3	115352	broad.mit.edu	37	chr1	157665123	157665123	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtatatcttgcttacctgtGaccctgagactcactccatg	8	12	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157665123	T	T	157665123	2	4	229	1	0	0	0	0	0	0	0	1	5853	1277	45	3		3	FCRL3	1	157665123	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	114925	157665123	91585498	244	173388											
CD1D	912	broad.mit.edu	37	chr1	158147092	158147092	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccctacatatggtccaccGggtttgataacttctgtgct	8	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158147092	T	T	158147092	1	4	229	0	1	0	0	0	0	0	0	0	3007	1131	39	1		1	CD1D	1	158147092	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	481969	158147092	91103529	245	173389											
CD1C	911	broad.mit.edu	37	chr1	158261957	158261957	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcaggtagctttcaacGgattagatttactgagtttc	8	7	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158261957	T	T	158261957	4	4	229	1	0	0	0	0	0	1	0	0	3006	1117	39	1	422	1	CD1C	1	158261957	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	114865	158261957	90988664	246	173390											
CD1C	911	broad.mit.edu	37	chr1	158262417	158262417	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctggctgtccagtcgcccCagccttgggtctggccagct	13	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158262417	A	A	158262417	2	1	229	1	0	0	0	0	0	0	0	1	3006	581	21	2		2	CD1C	1	158262417	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	460	158262417	90988204	247	173391											
OR10K1	391109	broad.mit.edu	37	chr1	158435743	158435743	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccatctgtaacccactgcGctactcagtgctcatgggac	10	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158435743	A	A	158435743	3	1	229	1	0	0	0	0	1	0	0	0	11007	1087	38	4	394	4	OR10K1	1	158435743	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	173326	158435743	90814878	248	173392											
OR10X1	128367	broad.mit.edu	37	chr1	158549455	158549456	+	Missense_Mutation	DNP	GG	TT	TT													agagaaggagagtgcactaaGgaagagatacataggggtgt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	158549456	TT	TT	158549455	3	4	229	1	0	0	0	0	1	0	0	0	11016	1000	35	2	740	2	OR10X1	1	158549455	Missense_Mutation	DNP	GG	TCGA-91-6836-01A-21D-1855-08	113712	158549455	90701166	249	173393											
SPTA1	6708	broad.mit.edu	37	chr1	158582586	158582586	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggatgacagtgtagtagGggaagcaaccagaatcggac	14	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158582586	T	T	158582586	1	4	229	0	1	0	0	0	0	0	0	0	15234	1247	43	2		2	SPTA1	1	158582586	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	33131	158582586	90668035	250	173394											
SPTA1	6708	broad.mit.edu	37	chr1	158596575	158596575	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaccattctacacatggatGggatttattagggtttctca	9	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158596575	T	T	158596575	1	4	229	0	1	0	0	0	0	0	0	0	15234	1363	47	2		2	SPTA1	1	158596575	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	13989	158596575	90654046	251	173395											
SPTA1	6708	broad.mit.edu	37	chr1	158631099	158631099	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctaccattttgtttccCctttctgttatctcttgaat	3	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158631099	A	A	158631099	3	1	229	1	0	0	0	0	1	0	0	0	15234	622	22	2	4834	2	SPTA1	1	158631099	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	34524	158631099	90619522	252	173396											
SPTA1	6708	broad.mit.edu	37	chr1	158641186	158641186	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaaagtcttcatgcttctGaagaagggcttctgcactgc	9	11	5	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	158641186	T	T	158641186	3	4	229	1	0	0	0	0	1	0	0	0	15234	1299	45	3	5877	3	SPTA1	1	158641186	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	10087	158641186	90609435	253	173397											
SPTA1	6708	broad.mit.edu	37	chr1	158646003	158646005	+	In_Frame_Del	DEL	TCT	-	-													gctcccagctggagaccagaTcttctttcatctcctggatc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	158646005	-	-	158646003	7	5	229	1	0	1	0	1	0	0	0	0	15234	1435	50	0	6399	0	SPTA1	1	158646003	In_Frame_Del	DEL	TCT	TCGA-91-6836-01A-21D-1855-08	4817	158646003	90604618	254	173398											
CADM3	57863	broad.mit.edu	37	chr1	159166863	159166863	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttaatggtaagccctcctCagttctcttcctccagaatc	6	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159166863	T	T	159166863	1	4	229	0	1	0	0	0	0	0	0	0	2594	841	29	4		4	CADM3	1	159166863	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	520860	159166863	90083758	255	173399											
CRP	1401	broad.mit.edu	37	chr1	159683824	159683824	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacagttccgtgtagaagtGgaggcacacagtgaaggctt	15	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159683824	T	T	159683824	3	4	229	1	0	0	0	0	1	0	0	0	3927	1348	47	2	512	2	CRP	1	159683824	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	516961	159683824	89566797	256	173400											
FCRL6	343413	broad.mit.edu	37	chr1	159779072	159779072	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagatgcccccagggccCtgggcgtcaggcagtgggat	18	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159779072	A	A	159779072	1	1	229	0	1	0	0	0	0	0	0	0	5856	696	24	2		2	FCRL6	1	159779072	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	95248	159779072	89471549	257	173401											
FCRL6	343413	broad.mit.edu	37	chr1	159779245	159779245	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggcctgctgaccctgctGtgggggacatggtgcagctc	16	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159779245	T	T	159779245	3	4	229	1	0	0	0	0	1	0	0	0	5856	1377	48	3	676	3	FCRL6	1	159779245	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	173	159779245	89471376	258	173402											
FCRL6	343413	broad.mit.edu	37	chr1	159779906	159779906	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcaagtcttgttcactccCgccagcaactggctggttcc	8	15	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159779906	A	A	159779906	2	1	229	1	0	0	0	0	0	0	0	1	5856	639	23	1		1	FCRL6	1	159779906	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	661	159779906	89470715	259	173403											
SLAMF8	56833	broad.mit.edu	37	chr1	159805027	159805027	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtccagagacagagaacCcccttgtgcaggatctgcca	12	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159805027	A	A	159805027	3	1	229	1	0	0	0	0	1	0	0	0	14483	623	22	2	853	2	SLAMF8	1	159805027	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	25121	159805027	89445594	260	173404											
CCDC19	25790	broad.mit.edu	37	chr1	159856448	159856448	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccaggatttgggcatccCggatggcatggcacttagca	12	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159856448	A	A	159856448	3	1	229	1	0	0	0	0	1	0	0	0	2822	652	23	1	1063	1	CCDC19	1	159856448	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	51421	159856448	89394173	261	173405											
CCDC19	25790	broad.mit.edu	37	chr1	159858268	159858268	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgattagggactccccggaGggatcctctgtgggaacact	13	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	159858268	T	T	159858268	2	4	229	1	0	0	0	0	0	0	0	1	2822	987	35	2		2	CCDC19	1	159858268	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1820	159858268	89392353	262	173406											
IGSF9	57549	broad.mit.edu	37	chr1	159900160	159900160	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctcactgccaccagacccCgcggaggggacaggggaggc	15	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159900160	A	A	159900160	3	1	229	1	0	0	0	0	1	0	0	0	7675	652	23	1	1684	1	IGSF9	1	159900160	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	41892	159900160	89350461	263	173407											
KCNJ10	3766	broad.mit.edu	37	chr1	160012200	160012200	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcttgtcggcaatgtgctcCattctcacgttgctgcgacc	10	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160012200	A	A	160012200	3	1	229	1	0	0	0	0	1	0	0	0	8114	594	21	2	1020	2	KCNJ10	1	160012200	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	112040	160012200	89238421	264	173408											
ATP1A2	477	broad.mit.edu	37	chr1	160106831	160106831	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggcatgaagtgagtgccCacccccatggcacctaccca	10	16	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160106831	A	A	160106831	1	1	229	0	1	0	0	0	0	0	0	0	1133	609	21	2		2	ATP1A2	1	160106831	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	94631	160106831	89143790	265	173409											
ATP1A4	480	broad.mit.edu	37	chr1	160128798	160128798	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctatcctctcatagcaagctCtggtaattcgaggaggagag	11	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160128798	A	A	160128798	3	1	229	1	0	0	0	0	1	0	0	0	1135	912	32	3	550	3	ATP1A4	1	160128798	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	21967	160128798	89121823	266	173410											
ATP1A4	480	broad.mit.edu	37	chr1	160145943	160145943	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctgaccagcaacatcccCgagatcacgcccttcctgat	6	18	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160145943	A	A	160145943	2	1	229	1	0	0	0	0	0	0	0	1	1135	639	23	1		1	ATP1A4	1	160145943	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	17145	160145943	89104678	267	173411											
ATP1A4	480	broad.mit.edu	37	chr1	160147258	160147258	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcccctggcctaccttttgGggcccttctctgaaccaggc	9	17	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160147258	T	T	160147258	1	4	229	0	1	0	0	0	0	0	0	0	1135	1247	43	2		2	ATP1A4	1	160147258	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1315	160147258	89103363	268	173412											
ATP1A4	480	broad.mit.edu	37	chr1	160156142	160156142	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatcagaaaactcctcatcCgtcagcacccggatggtgag	9	12	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160156142	A	A	160156142	3	1	229	1	0	0	0	0	1	0	0	0	1135	652	23	1	3128	1	ATP1A4	1	160156142	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	8884	160156142	89094479	269	173413											
PEA15	8682	broad.mit.edu	37	chr1	160182980	160182980	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggttgactacagaaccCgtgtgctgaagatctctgag	13	8	1	5	rs11552719		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160182980	A	A	160182980	3	1	229	1	0	0	0	0	1	0	0	0	11805	652	23	1	259	1	PEA15	1	160182980	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	26838	160182980	89067641	270	173414											
DCAF8	50717	broad.mit.edu	37	chr1	160188115	160188115	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttccaaccctagcttaccCggtgatggcgtctctgtctc	8	14	2	1	rs142007100	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160188115	A	A	160188115	3	1	229	1	0	0	0	0	1	0	0	0	4309	666	23	1	125	1	DCAF8	1	160188115	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5135	160188115	89062506	271	173415											
DCAF8	50717	broad.mit.edu	37	chr1	160188279	160188279	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcaatgaagaggaaccCgggacctgatcaagaaggct	14	9	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160188279	A	A	160188279	1	1	229	0	1	0	0	0	0	0	0	0	4309	667	23	1		1	DCAF8	1	160188279	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	164	160188279	89062342	272	173416											
DCAF8	50717	broad.mit.edu	37	chr1	160252904	160252904	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgaagagggcatcctgcGggggaaggatggctgaaatg	18	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160252904	T	T	160252904	1	4	229	0	1	0	0	0	0	0	0	0	4309	1131	39	1		1	DCAF8	1	160252904	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	64625	160252904	88997717	273	173417											
COPA	1314	broad.mit.edu	37	chr1	160260560	160260560	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccatggtttggtagttcCgttgatgtgagacacaactg	11	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160260560	A	A	160260560	1	1	229	0	1	0	0	0	0	0	0	0	3759	667	23	1		1	COPA	1	160260560	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7656	160260560	88990061	274	173418											
COPA	1314	broad.mit.edu	37	chr1	160261566	160261566	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacctagtgaagggtgaaGggaaggacgtctctgttgtg	15	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160261566	T	T	160261566	1	4	229	0	1	0	0	0	0	0	0	0	3759	1015	35	2		2	COPA	1	160261566	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1006	160261566	88989055	275	173419											
COPA	1314	broad.mit.edu	37	chr1	160261591	160261591	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgtctctgttgtgctcaGggtcctatagatcttacctc	10	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160261591	T	T	160261591	1	4	229	0	1	0	0	0	0	0	0	0	3759	1015	35	2		2	COPA	1	160261591	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	25	160261591	88989030	276	173420											
COPA	1314	broad.mit.edu	37	chr1	160265864	160265864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcactgtctccttctctGggtcaaatgtctcctttagg	8	12	5	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160265864	T	T	160265864	3	4	229	1	0	0	0	0	1	0	0	0	3759	1348	47	2	1383	2	COPA	1	160265864	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4273	160265864	88984757	277	173421											
COPA	1314	broad.mit.edu	37	chr1	160267547	160267547	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagcaatctaaagaatccCcagggtcgtgttaacaggtt	10	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160267547	A	A	160267547	1	1	229	0	1	0	0	0	0	0	0	0	3759	638	22	2		2	COPA	1	160267547	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1683	160267547	88983074	278	173422											
COPA	1314	broad.mit.edu	37	chr1	160269007	160269007	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atacattgttgcccttcaccCgtgtgacatagatgggtaaa	9	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160269007	A	A	160269007	3	1	229	1	0	0	0	0	1	0	0	0	3759	652	23	1	2023	1	COPA	1	160269007	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1460	160269007	88981614	279	173423											
COPA	1314	broad.mit.edu	37	chr1	160269047	160269047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccagagttcgaatgatccCgtggtccctaagaacagagg	11	10	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160269047	A	A	160269047	3	1	229	1	0	0	0	0	1	0	0	0	3759	652	23	1	2063	1	COPA	1	160269047	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	40	160269047	88981574	280	173424											
VANGL2	57216	broad.mit.edu	37	chr1	160395211	160395211	+	3'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaactctggggggtcctgAgggggtgggagggggcttgg	24	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160395211	G	G	160395211	1	3	229	0	1	0	0	0	0	0	0	0	17247	319	11	5		5	VANGL2	1	160395211	3'UTR	SNP	A	TCGA-91-6836-01A-21D-1855-08	126164	160395211	88855410	281	173425											
SLAMF1	6504	broad.mit.edu	37	chr1	160589455	160589455	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttgactcctgttccctaCcttcctctgctctggatgga	7	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	160589455	G	G	160589455	1	3	229	0	1	0	0	0	0	0	0	0	14480	522	18	4		4	SLAMF1	1	160589455	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	194244	160589455	88661166	282	173426											
SLAMF1	6504	broad.mit.edu	37	chr1	160607340	160607340	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtgggagggaggagaagaGagtcccttattattaaggcc	15	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160607340	A	A	160607340	1	1	229	0	1	0	0	0	0	0	0	0	14480	957	33	4		4	SLAMF1	1	160607340	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	17885	160607340	88643281	283	173427											
CD244	51744	broad.mit.edu	37	chr1	160803827	160803827	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaccccaccaccaccacGggaagaggctcaccttcctg	7	19	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160803827	T	T	160803827	1	4	229	0	1	0	0	0	0	0	0	0	3017	1131	39	1		1	CD244	1	160803827	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	196487	160803827	88446794	284	173428											
ITLN1	55600	broad.mit.edu	37	chr1	160849191	160849191	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctgaactgaacaaatccCgcagtgaattcccctgaaaa	6	13	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160849191	A	A	160849191	2	1	229	1	0	0	0	0	0	0	0	1	7980	639	23	1		1	ITLN1	1	160849191	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	45364	160849191	88401430	285	173429											
ARHGAP30	257106	broad.mit.edu	37	chr1	161018298	161018298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctccatccccactctccCgttccttgctgacctcccct	3	23	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161018298	A	A	161018298	3	1	229	1	0	0	0	0	1	0	0	0	881	652	23	1	796	1	ARHGAP30	1	161018298	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	169107	161018298	88232323	286	173430											
ARHGAP30	257106	broad.mit.edu	37	chr1	161029315	161029315	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccactgcctctcactccCcatctctgctgtcctcagca	4	21	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161029315	A	A	161029315	1	1	229	0	1	0	0	0	0	0	0	0	881	638	22	2		2	ARHGAP30	1	161029315	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11017	161029315	88221306	287	173431											
PVRL4	81607	broad.mit.edu	37	chr1	161047375	161047375	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtgacggcagcagagcGggagtgcttgaaggaacggc	19	7	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161047375	T	T	161047375	3	4	229	1	0	0	0	0	1	0	0	0	12950	1116	39	1	962	1	PVRL4	1	161047375	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	18060	161047375	88203246	288	173432											
KLHDC9	126823	broad.mit.edu	37	chr1	161069502	161069502	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcactcatgttctgtggtcGggccctttgctgtgctgttt	11	10	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161069502	T	T	161069502	3	4	229	1	0	0	0	0	1	0	0	0	8435	1116	39	1	831	1	KLHDC9	1	161069502	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	22127	161069502	88181119	289	173433											
NIT1	4817	broad.mit.edu	37	chr1	161088669	161088669	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtactttgtgctcagccCaggtaacacgttttgttgtg	10	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161088669	A	A	161088669	2	1	229	1	0	0	0	0	0	0	0	1	10528	581	21	2		2	NIT1	1	161088669	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	19167	161088669	88161952	290	173434											
UFC1	51506	broad.mit.edu	37	chr1	161126807	161126807	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaacaaggaaggaactcGgtaggtagaccctcttggga	13	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161126807	T	T	161126807	3	4	229	1	0	0	0	0	1	0	0	0	17060	1130	39	1	197	1	UFC1	1	161126807	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	38138	161126807	88123814	291	173435											
UFC1	51506	broad.mit.edu	37	chr1	161127932	161127932	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcaaaatatgcctgacGgatcatttcaaacctttgtg	10	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161127932	T	T	161127932	2	4	229	1	0	0	0	0	0	0	0	1	17060	1103	39	1		1	UFC1	1	161127932	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1125	161127932	88122689	292	173436											
USP21	27005	broad.mit.edu	37	chr1	161131966	161131966	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaaacccacgagcttgGggaaggcatgtggaaggaga	18	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161131966	T	T	161131966	1	4	229	0	1	0	0	0	0	0	0	0	17179	1247	43	2		2	USP21	1	161131966	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4034	161131966	88118655	293	173437											
PPOX	5498	broad.mit.edu	37	chr1	161138863	161138863	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtggtcacttcgtggaggtCtagagatgttgcctcaggcc	14	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161138863	G	G	161138863	3	3	229	1	0	0	0	0	1	0	0	0	12449	912	32	4	719	4	PPOX	1	161138863	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6897	161138863	88111758	294	173438											
PPOX	5498	broad.mit.edu	37	chr1	161141050	161141050	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctataggcataagaatgcGgggcagcaaagaggcaaagt	13	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161141050	T	T	161141050	1	4	229	0	1	0	0	0	0	0	0	0	12449	1131	39	1		1	PPOX	1	161141050	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2187	161141050	88109571	295	173439											
ADAMTS4	9507	broad.mit.edu	37	chr1	161161350	161161350	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgaccacattgttgtatcCgtacctgtgtggaaggagta	12	7	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161161350	A	A	161161350	4	1	229	1	0	0	0	0	0	1	0	0	268	661	23	1	425	1	ADAMTS4	1	161161350	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	20300	161161350	88089271	296	173440											
ADAMTS4	9507	broad.mit.edu	37	chr1	161166467	161166467	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcactgggccccacttgGggcccctcctcgcctgaccc	11	20	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161166467	T	T	161166467	2	4	229	1	0	0	0	0	0	0	0	1	268	1219	43	2		2	ADAMTS4	1	161166467	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	5117	161166467	88084154	297	173441											
NDUFS2	4720	broad.mit.edu	37	chr1	161180140	161180140	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcggacaattgacattgGggttgtaacagcagaagaag	12	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161180140	T	T	161180140	3	4	229	1	0	0	0	0	1	0	0	0	10387	1232	43	2	857	2	NDUFS2	1	161180140	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	13673	161180140	88070481	298	173442											
NR1I3	9970	broad.mit.edu	37	chr1	161199615	161199615	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agatctcctggagcagcggcAtcatggcagacaggccctgg	14	12	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161199615	T	T	161199615	3	4	229	1	0	0	0	0	1	0	0	0	10716	217	8	5	126	5	NR1I3	1	161199615	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	19475	161199615	88051006	299	173443											
NR1I3	9970	broad.mit.edu	37	chr1	161200609	161200609	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtcccaccgtaccgatccCggggccttcgctgctggccc	12	18	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161200609	A	A	161200609	3	1	229	1	0	0	0	0	1	0	0	0	10716	652	23	1	238	1	NR1I3	1	161200609	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	994	161200609	88050012	300	173444											
NR1I3	9970	broad.mit.edu	37	chr1	161201155	161201155	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgtgtagcgaagaggccCgcagaggaagttttgtgttt	14	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161201155	A	A	161201155	3	1	229	1	0	0	0	0	1	0	0	0	10716	652	23	1	526	1	NR1I3	1	161201155	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	546	161201155	88049466	301	173445											
NR1I3	9970	broad.mit.edu	37	chr1	161206233	161206233	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggagggctatttccattgGggaggagactctcacctgaa	13	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161206233	T	T	161206233	1	4	229	0	1	0	0	0	0	0	0	0	10716	1247	43	2		2	NR1I3	1	161206233	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	5078	161206233	88044388	302	173446											
NR1I3	9970	broad.mit.edu	37	chr1	161207733	161207733	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccccaccttggcctccCaaagtgctggaatgacacac	7	17	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161207733	A	A	161207733	1	1	229	0	1	0	0	0	0	0	0	0	10716	609	21	2		2	NR1I3	1	161207733	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1500	161207733	88042888	303	173447											
C1orf192	257177	broad.mit.edu	37	chr1	161335431	161335431	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgggaggtcagggtcaccCgagcagggggtatcttcaga	16	9	4	1	rs149688361	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161335431	A	A	161335431	3	1	229	1	0	0	0	0	1	0	0	0	2044	652	23	1	308	1	C1orf192	1	161335431	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	127698	161335431	87915190	304	173448											
FCGR2A	2212	broad.mit.edu	37	chr1	161475931	161475931	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcatgggcagttccccCattttagtggggtctgggat	13	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161475931	A	A	161475931	1	1	229	0	1	0	0	0	0	0	0	0	5838	609	21	2		2	FCGR2A	1	161475931	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	140500	161475931	87774690	305	173449											
FCGR3A	2214	broad.mit.edu	37	chr1	161518373	161518373	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtggaattgtcctcagGggagtaggctccctggcact	14	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161518373	T	T	161518373	3	4	229	1	0	0	0	0	1	0	0	0	5841	1232	43	2	619	2	FCGR3A	1	161518373	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	42442	161518373	87732248	306	173450											
ATF6	22926	broad.mit.edu	37	chr1	161762110	161762110	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagtttacaacctgcaccCactaaaggtacctgagcaga	7	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161762110	A	A	161762110	2	1	229	1	0	0	0	0	0	0	0	1	1088	581	21	2		2	ATF6	1	161762110	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	243737	161762110	87488511	307	173451											
ATF6	22926	broad.mit.edu	37	chr1	161823065	161823065	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacatgaagtagaaaggacCaagtcaagaagaatgacaaa	10	5	1	6			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161823065	A	A	161823065	2	1	229	1	0	0	0	0	0	0	0	1	1088	581	21	2		2	ATF6	1	161823065	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	60955	161823065	87427556	308	173452											
RGS5	8490	broad.mit.edu	37	chr1	163122259	163122259	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagcctttggctcccaacGggaggtctgtgtctcagatg	12	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163122259	T	T	163122259	1	4	229	0	1	0	0	0	0	0	0	0	13417	1131	39	1		1	RGS5	1	163122259	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1299194	163122259	86128362	309	173453											
DUSP27	92235	broad.mit.edu	37	chr1	167095706	167095706	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggagagcgtgagcagccaCgacatctgggtcctgaagca	15	10	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	167095706	G	G	167095706	3	3	229	1	0	0	0	0	1	0	0	0	4864	535	19	4	1356	4	DUSP27	1	167095706	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3973447	167095706	82154915	310	173454											
DCAF6	55827	broad.mit.edu	37	chr1	168014275	168014275	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggaaccagaaacttcagatCagactagcactgagagtgct	10	9	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	168014275	A	A	168014275	3	1	229	1	0	0	0	0	1	0	0	0	4307	827	29	3	1955	3	DCAF6	1	168014275	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	918569	168014275	81236346	311	173455											
F5	2153	broad.mit.edu	37	chr1	169509982	169509982	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatatctggctgagatccGggagaagggtggtgtcactg	17	6	2	3	rs113768654	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169509982	T	T	169509982	3	4	229	1	0	0	0	0	1	0	0	0	5391	1116	39	1	2380	1	F5	1	169509982	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1495707	169509982	79740639	312	173456											
SELP	6403	broad.mit.edu	37	chr1	169586791	169586791	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacgactagtttatgtctaaTgtagttgtttgaaggaaaaa	9	3	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169586791	A	A	169586791	1	1	229	0	1	0	0	0	0	0	0	0	14132	1479	51	5		5	SELP	1	169586791	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	76809	169586791	79663830	313	173457											
FMO2	2327	broad.mit.edu	37	chr1	171178118	171178118	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggttgggcctgggcaatGggaaggagccagaaatgcca	16	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171178118	A	A	171178118	1	1	229	0	1	0	0	0	0	0	0	0	6013	1363	47	4		4	FMO2	1	171178118	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	1591327	171178118	78072503	314	173458											
PRDX6	9588	broad.mit.edu	37	chr1	173450503	173450503	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctcgggactttacccCagtgtgcaccacagagcttg	9	16	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	173450503	A	A	173450503	3	1	229	1	0	0	0	0	1	0	0	0	12575	594	21	2	140	2	PRDX6	1	173450503	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2272385	173450503	75800118	315	173459											
PAPPA2	60676	broad.mit.edu	37	chr1	176564612	176564612	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctactcctggaaccgcagGgatgggctctgtcacgtgga	14	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	176564612	T	T	176564612	3	4	229	1	0	0	0	0	1	0	0	0	11527	1223	43	2	1878	2	PAPPA2	1	176564612	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3114109	176564612	72686009	316	173460											
C1orf49	84066	broad.mit.edu	37	chr1	178489999	178489999	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatccccttcatcactgtgGgacctgctgcgtaagtgaaa	11	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178489999	A	A	178489999	3	1	229	1	0	0	0	0	1	0	0	0	2063	1232	43	4	583	4	C1orf49	1	178489999	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1925387	178489999	70760622	317	173461											
TDRD5	163589	broad.mit.edu	37	chr1	179632355	179632355	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaaagtcaaactgataTagaaagttaataaatacctt	8	4	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179632355	C	C	179632355	1	2	229	0	1	0	0	0	0	0	0	0	15855	1421	49	5		5	TDRD5	1	179632355	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1142356	179632355	69618266	318	173462											
XPR1	9213	broad.mit.edu	37	chr1	180794374	180794374	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctccaattagtgtcatccCcacatatgtgtatccacttg	6	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	180794374	A	A	180794374	3	1	229	1	0	0	0	0	1	0	0	0	17578	623	22	2	1062	2	XPR1	1	180794374	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1162019	180794374	68456247	319	173463											
CACNA1E	777	broad.mit.edu	37	chr1	181707488	181707488	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtcatttccttccaccAtatgtgtctttcaggtcctg	7	12	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181707488	G	G	181707488	1	3	229	0	1	0	0	0	0	0	0	0	2568	232	8	5		5	CACNA1E	1	181707488	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	913114	181707488	67543133	320	173464											
CACNA1E	777	broad.mit.edu	37	chr1	181731689	181731689	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccttttctgatgttcctAtgactgaattcatttggcag	7	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	181731689	G	G	181731689	1	3	229	0	1	0	0	0	0	0	0	0	2568	464	16	5		5	CACNA1E	1	181731689	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	24201	181731689	67518932	321	173465											
RNASEL	6041	broad.mit.edu	37	chr1	182555038	182555038	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgtcataacaagatcccCacaatctgtactggctccac	6	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182555038	A	A	182555038	3	1	229	1	0	0	0	0	1	0	0	0	13527	594	21	2	1345	2	RNASEL	1	182555038	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	823349	182555038	66695583	322	173466											
NPL	80896	broad.mit.edu	37	chr1	182787807	182787807	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagcaacagtttgctttcCtttttggggtggatgaggta	13	7	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	182787807	A	A	182787807	3	1	229	1	0	0	0	0	1	0	0	0	10680	681	24	2	615	2	NPL	1	182787807	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	232769	182787807	66462814	323	173467											
C1orf14	81626	broad.mit.edu	37	chr1	182873667	182873667	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tactaaagtttttccctgtgTgcgtgtgtgtgtgtgtgtgt	13	5	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	182873667	C	C	182873667	1	2	229	0	1	0	0	0	0	0	0	0	2020	1711	59	5		5	C1orf14	1	182873667	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	85860	182873667	66376954	324	173468											
RGL1	23179	broad.mit.edu	37	chr1	183775502	183775502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctttctctttatcccgtccCtggcagagctcgattcagga	8	13	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183775502	A	A	183775502	1	1	229	0	1	0	0	0	0	0	0	0	13384	696	24	2		2	RGL1	1	183775502	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	901835	183775502	65475119	325	173469											
C1orf25	81627	broad.mit.edu	37	chr1	185089567	185089567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgaatgttgtaataaaaggGaggatgttcagtactgacat	12	3	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	185089567	T	T	185089567	3	4	229	1	0	0	0	0	1	0	0	0	2056	1174	41	3	312	3	C1orf25	1	185089567	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1314065	185089567	64161054	326	173470											
PLA2G4A	5321	broad.mit.edu	37	chr1	186880524	186880524	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcattctgcacgtgatgtGagttggaaatttttcaagtg	11	5	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186880524	T	T	186880524	1	4	229	0	1	0	0	0	0	0	0	0	12096	1305	45	3		3	PLA2G4A	1	186880524	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1790957	186880524	62370097	327	173471											
FAM5C	339479	broad.mit.edu	37	chr1	190067402	190067402	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtccagctgcaaaatcaGgtcccgaattgcttcagggt	11	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	190067402	T	T	190067402	3	4	229	1	0	0	0	0	1	0	0	0	5645	991	35	2	257	2	FAM5C	1	190067402	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3186878	190067402	59183219	328	173472											
KCNT2	343450	broad.mit.edu	37	chr1	196311317	196311318	+	Missense_Mutation	DNP	CC	AG	AG													cttcattcccggagcatctaCcgtacatcttctgccattgt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	196311318	AG	AG	196311317	3	1	229	1	0	0	0	0	1	0	0	0	8162	507	18	3	2018	3	KCNT2	1	196311317	Missense_Mutation	DNP	CC	TCGA-91-6836-01A-21D-1855-08	6243915	196311317	52939304	329	173473											
F13B	2165	broad.mit.edu	37	chr1	197029500	197029500	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatttaaaaatttaccttcGcatacaggagattctgggta	7	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	197029500	C	C	197029500	3	2	229	1	0	0	0	0	1	0	0	0	5384	1079	38	4	1216	4	F13B	1	197029500	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	718183	197029500	52221121	330	173474											
ASPM	259266	broad.mit.edu	37	chr1	197102652	197102652	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagctctgagagacatttcCtcttttgtaggtgctctagg	10	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197102652	T	T	197102652	2	4	229	1	0	0	0	0	0	0	0	1	1060	680	24	4		4	ASPM	1	197102652	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	73152	197102652	52147969	331	173475											
C1orf106	55765	broad.mit.edu	37	chr1	200867491	200867491	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctggtcacggtgtccccCctccctgctctgtgccctct	10	18	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200867491	A	A	200867491	3	1	229	1	0	0	0	0	1	0	0	0	2000	623	22	2	224	2	C1orf106	1	200867491	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3764839	200867491	48383130	332	173476											
KIF21B	23046	broad.mit.edu	37	chr1	200957524	200957524	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatcctgaggagccccCaaattcaggctcagccctgg	11	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200957524	A	A	200957524	1	1	229	0	1	0	0	0	0	0	0	0	8359	609	21	2		2	KIF21B	1	200957524	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	90033	200957524	48293097	333	173477											
TNNT2	7139	broad.mit.edu	37	chr1	201332477	201332477	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaaagccttcttcttccGggcctcatcctcagccttcc	7	17	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201332477	T	T	201332477	2	4	229	1	0	0	0	0	0	0	0	1	16454	1115	39	1		1	TNNT2	1	201332477	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	374953	201332477	47918144	334	173478											
LAD1	3898	broad.mit.edu	37	chr1	201356059	201356059	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcccgactcagtctccGgcgaggtgggatttccagtt	12	12	2	0	rs150517332		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201356059	A	A	201356059	3	1	229	1	0	0	0	0	1	0	0	0	8671	1115	39	4	1155	4	LAD1	1	201356059	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	23582	201356059	47894562	335	173479											
LMOD1	25802	broad.mit.edu	37	chr1	201915289	201915289	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccggttgtacacaccCgtggactgtttctccgtctg	10	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201915289	A	A	201915289	2	1	229	1	0	0	0	0	0	0	0	1	8930	639	23	1		1	LMOD1	1	201915289	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	559230	201915289	47335332	336	173480											
FMOD	2331	broad.mit.edu	37	chr1	203225263	203225263	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagtatatctggaaagcGgtctgcccctggaggtggta	13	8	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	203225263	T	T	203225263	1	4	229	0	1	0	0	0	0	0	0	0	6017	1131	39	1		1	FMOD	1	203225263	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1309974	203225263	46025358	337	173481											
LAX1	54900	broad.mit.edu	37	chr1	203740074	203740074	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggaagaagcgtgagtccCttgtttgtcctgagttgaga	13	7	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203740074	A	A	203740074	1	1	229	0	1	0	0	0	0	0	0	0	8720	696	24	2		2	LAX1	1	203740074	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	514811	203740074	45510547	338	173482											
CNTN2	6900	broad.mit.edu	37	chr1	205039099	205039099	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaacgagagcgtccggcccTacacgccctttgaggtcaag	12	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	205039099	A	A	205039099	3	1	229	1	0	0	0	0	1	0	0	0	3673	1522	53	5	2407	5	CNTN2	1	205039099	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	1299025	205039099	44211522	339	173483											
RBBP5	5929	broad.mit.edu	37	chr1	205070738	205070738	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcactcacctccccttccGggcaaactcaattgacttaa	4	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205070738	T	T	205070738	2	4	229	1	0	0	0	0	0	0	0	1	13210	1115	39	1		1	RBBP5	1	205070738	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	31639	205070738	44179883	340	173484											
NUCKS1	64710	broad.mit.edu	37	chr1	205687462	205687462	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcatccccagatttctcGggtggggggcttgtagatgt	13	10	2	2	rs147721587	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	205687462	T	T	205687462	2	4	229	1	0	0	0	0	0	0	0	1	10815	1103	39	1		1	NUCKS1	1	205687462	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	616724	205687462	43563159	341	173485											
PM20D1	148811	broad.mit.edu	37	chr1	205813199	205813199	+	Intron	DEL	G	-	-													ttccctccaaggtgtggggtGggatgctttactcacaaggc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	205813199	-	-	205813199	6	5	229	0	1	1	0	1	0	0	0	0	12223	1363	47	0		0	PM20D1	1	205813199	Intron	DEL	G	TCGA-91-6836-01A-21D-1855-08	125737	205813199	43437422	342	173486											
CR1L	1379	broad.mit.edu	37	chr1	207890954	207890954	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacctcattggggagagCaccatccgccgcacaagtga	10	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	207890954	A	A	207890954	3	1	229	1	0	0	0	0	1	0	0	0	3873	709	25	3	1602	3	CR1L	1	207890954	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2077755	207890954	41359667	343	173487											
PLXNA2	5362	broad.mit.edu	37	chr1	208218542	208218542	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctccagaggcaggagggCagaggtttttgccctgtaga	14	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	208218542	T	T	208218542	3	4	229	1	0	0	0	0	1	0	0	0	12215	710	25	4	2231	4	PLXNA2	1	208218542	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	327588	208218542	41032079	344	173488											
PLXNA2	5362	broad.mit.edu	37	chr1	208218557	208218557	+	Splice_Site	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gagggcagaggtttttgcccTgtagagaatagcagtcttta	13	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208218557	A	A	208218557	5	1	229	1	0	0	0	0	0	0	1	0	12215	1594	55	5	2246	5	PLXNA2	1	208218557	Splice_Site	SNP	T	TCGA-91-6836-01A-21D-1855-08	15	208218557	41032064	345	173489											
PLXNA2	5362	broad.mit.edu	37	chr1	208269121	208269121	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctttttactatcttggCctgagagttgggggttaggt	12	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	208269121	A	A	208269121	1	1	229	0	1	0	0	0	0	0	0	0	12215	754	26	3		3	PLXNA2	1	208269121	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	50564	208269121	40981500	346	173490											
HHAT	55733	broad.mit.edu	37	chr1	210686405	210686405	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcaatccatttagtcatActatgaatttaaattataaa	4	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	210686405	G	G	210686405	1	3	229	0	1	0	0	0	0	0	0	0	7156	406	14	5		5	HHAT	1	210686405	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	2417284	210686405	38564216	347	173491											
CENPF	1063	broad.mit.edu	37	chr1	214782037	214782037	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agggtccccaagggggcggcCccggccccaccaggccccgg	16	19	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	214782037	G	G	214782037	1	3	229	0	1	0	0	0	0	0	0	0	3261	638	22	4		4	CENPF	1	214782037	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4095632	214782037	34468584	348	173492											
KCTD3	51133	broad.mit.edu	37	chr1	215793562	215793562	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	acagaaatgtagaaagagctGtccctgaaaatggtaacttg	10	6	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	215793562	C	C	215793562	3	2	229	1	0	0	0	0	1	0	0	0	8180	1377	48	4	2120	4	KCTD3	1	215793562	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1011525	215793562	33457059	349	173493											
USH2A	7399	broad.mit.edu	37	chr1	216050950	216050950	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgctgactgttacagctGggtgattaatgccacagata	10	8	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216050950	T	T	216050950	1	4	229	0	1	0	0	0	0	0	0	0	17162	1363	47	2		2	USH2A	1	216050950	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	257388	216050950	33199671	350	173494											
GPATCH2	55105	broad.mit.edu	37	chr1	217787488	217787488	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atatcatttcagtaccttgtCttccctcatcattggtaaac	4	11	5	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	217787488	A	A	217787488	3	1	229	1	0	0	0	0	1	0	0	0	6656	913	32	3	788	3	GPATCH2	1	217787488	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1736538	217787488	31463133	351	173495											
SLC30A10	55532	broad.mit.edu	37	chr1	220088856	220088856	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gttaagactttgtccgtggtCactcagacagctatccaaag	9	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220088856	A	A	220088856	3	1	229	1	0	0	0	0	1	0	0	0	14668	826	29	3	68	3	SLC30A10	1	220088856	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2301368	220088856	29161765	352	173496											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220326683	220326683	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtgtggcctcttctgtGggatctttgacctttgtggc	15	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220326683	T	T	220326683	2	4	229	1	0	0	0	0	0	0	0	1	13044	1335	47	2		2	RAB3GAP2	1	220326683	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	237827	220326683	28923938	353	173497											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220332761	220332761	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatcttttggtgattttccAacctaaaataaaaagataaa	4	6	1	2	rs111791643		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220332761	T	T	220332761	2	4	229	1	0	0	0	0	0	0	0	1	13044	117	5	5		5	RAB3GAP2	1	220332761	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	6078	220332761	28917860	354	173498											
RAB3GAP2	25782	broad.mit.edu	37	chr1	220369497	220369497	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tttagaaatgtaaactgcttAatcttctaaggctaagcaag	7	6	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220369497	T	T	220369497	1	4	229	0	1	0	0	0	0	0	0	0	13044	377	13	5		5	RAB3GAP2	1	220369497	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	36736	220369497	28881124	355	173499											
MARK1	4139	broad.mit.edu	37	chr1	220835588	220835588	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtactggtaatgcctaatGtggtctgcctgtgaatctcc	10	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220835588	T	T	220835588	1	4	229	0	1	0	0	0	0	0	0	0	9404	1392	48	3		3	MARK1	1	220835588	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	466091	220835588	28415033	356	173500											
MIA3	375056	broad.mit.edu	37	chr1	222802876	222802876	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttagggaccattcatccaGatccagaaattgaagaaagc	8	8	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	222802876	T	T	222802876	3	4	229	1	0	0	0	0	1	0	0	0	9658	942	33	3	2328	3	MIA3	1	222802876	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1967288	222802876	26447745	357	173501											
GJC2	57165	broad.mit.edu	37	chr1	228346748	228346748	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgagaagggcagtgccagcaGcagggacgggaagaccaccg	17	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	228346748	C	C	228346748	3	2	229	1	0	0	0	0	1	0	0	0	6479	971	34	4	1291	4	GJC2	1	228346748	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5543872	228346748	20903873	358	173502											
OBSCN	84033	broad.mit.edu	37	chr1	228479688	228479688	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgaactgagcaaggtgGcccctgtggagtggaggaag	19	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	228479688	T	T	228479688	3	4	229	1	0	0	0	0	1	0	0	0	10907	1203	42	3	10579	3	OBSCN	1	228479688	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	132940	228479688	20770933	359	173503											
URB2	9816	broad.mit.edu	37	chr1	229772860	229772860	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagcgtgactcaggtcttGtcagtcagcagcttccctgg	11	14	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	229772860	C	C	229772860	3	2	229	1	0	0	0	0	1	0	0	0	17151	1377	48	4	2510	4	URB2	1	229772860	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1293172	229772860	19477761	360	173504											
CAPN9	10753	broad.mit.edu	37	chr1	230933908	230933908	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccttctctcctatcagGggtgttccaggctctcagta	8	15	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230933908	T	T	230933908	3	4	229	1	0	0	0	0	1	0	0	0	2658	1246	43	2	2062	2	CAPN9	1	230933908	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1161048	230933908	18316713	361	173505											
EDARADD	128178	broad.mit.edu	37	chr1	236645688	236645688	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgatcaggataaagctGgatccgtgtcacccaacggt	12	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	236645688	T	T	236645688	2	4	229	1	0	0	0	0	0	0	0	1	4946	1335	47	2		2	EDARADD	1	236645688	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	5711780	236645688	12604933	362	173506											
MTR	4548	broad.mit.edu	37	chr1	237024487	237024487	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaccaaaaaaaatatccCcgacctctcaatataattga	2	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237024487	A	A	237024487	2	1	229	1	0	0	0	0	0	0	0	1	10052	610	22	2		2	MTR	1	237024487	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	378799	237024487	12226134	363	173507											
RYR2	6262	broad.mit.edu	37	chr1	237801647	237801647	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ataactctttgttaatcatgTtgtttgcaggtagttcgtta	8	5	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	237801647	G	G	237801647	1	3	229	0	1	0	0	0	0	0	0	0	13880	1740	60	5		5	RYR2	1	237801647	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	777160	237801647	11448974	364	173508											
RYR2	6262	broad.mit.edu	37	chr1	237947924	237947924	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccagcgttttcagaggCtttttccgcatcatttgcag	11	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	237947924	A	A	237947924	2	1	229	1	0	0	0	0	0	0	0	1	13880	784	28	3		3	RYR2	1	237947924	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	146277	237947924	11302697	365	173509											
FMN2	56776	broad.mit.edu	37	chr1	240306058	240306058	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcagtggccaattctgccCgttccccgtgggccaacgac	10	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	240306058	A	A	240306058	1	1	229	0	1	0	0	0	0	0	0	0	6008	667	23	1		1	FMN2	1	240306058	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2358134	240306058	8944563	366	173510											
RGS7	6000	broad.mit.edu	37	chr1	241262011	241262011	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagaaagcttttgaccgtacGaataggaattccattttttt	7	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	241262011	T	T	241262011	3	4	229	1	0	0	0	0	1	0	0	0	13419	1058	37	3	1397	3	RGS7	1	241262011	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	955953	241262011	7988610	367	173511											
ZNF496	84838	broad.mit.edu	37	chr1	247492767	247492767	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagacgccgagaggactcGgggctgggaagctccccctg	16	12	0	2	rs144794714	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247492767	T	T	247492767	2	4	229	1	0	0	0	0	0	0	0	1	18072	1103	39	1		1	ZNF496	1	247492767	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	6230756	247492767	1757854	368	173512											
OR6F1	343169	broad.mit.edu	37	chr1	247875557	247875557	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcacgggggccacagaaGgacaggccactgatgagggc	17	10	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	247875557	T	T	247875557	2	4	229	1	0	0	0	0	0	0	0	1	11295	987	35	2		2	OR6F1	1	247875557	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	382790	247875557	1375064	369	173513											
OR14A16	284532	broad.mit.edu	37	chr1	247978437	247978437	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atccaaaactacattaataaGgatgagtgcaatttctctta	5	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	247978437	A	A	247978437	3	1	229	1	0	0	0	0	1	0	0	0	11039	1000	35	4	338	4	OR14A16	1	247978437	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	102880	247978437	1272184	370	173514											
OR2L13	284521	broad.mit.edu	37	chr1	248166475	248166475	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caactgatttcatcttactgGggctgttcccaccatcaaga	7	12	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248166475	T	T	248166475	1	4	229	0	1	0	0	0	0	0	0	0	11100	1247	43	2		2	OR2L13	1	248166475	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	188038	248166475	1084146	371	173515											
OR2L13	284521	broad.mit.edu	37	chr1	248247877	248247877	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggagaataaagtctgGggtagtatttctcatctcca	9	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	248247877	T	T	248247877	1	4	229	0	1	0	0	0	0	0	0	0	11100	1247	43	2		2	OR2L13	1	248247877	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	81402	248247877	1002744	372	173516											
OR2T10	127069	broad.mit.edu	37	chr1	248756792	248756792	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	gggtgccacacccaaggaccGagatggtcttgtctttggcc	13	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	248756792	C	C	248756792	3	2	229	1	0	0	0	0	1	0	0	0	11111	1059	37	4	663	4	OR2T10	1	248756792	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	508915	248756792	493829	373	173517											
ZNF692	55657	broad.mit.edu	37	chr1	249152029	249152029	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccatcccctacctacctGcacagaggacacagcctgaa	7	17	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	249152029	A	A	249152029	3	1	229	1	0	0	0	0	1	0	0	0	18224	1319	46	4	1390	4	ZNF692	1	249152029	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	395237	249152029	98592	374	173518											
PXDN	7837	broad.mit.edu	37	chr2	1670144	1670144	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcaagggtgtgcggtcaCctctcgtccaggagatccgc	14	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1670144	A	A	1670144	3	1	229	1	0	0	0	0	1	0	0	0	12955	507	18	3	3362	3	PXDN	2	1670144	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08		1670144	241529229	375	173519											
MYT1L	23040	broad.mit.edu	37	chr2	1926195	1926195	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccatggccatcttctccCtcatggcctttgctctttcc	5	17	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1926195	A	A	1926195	3	1	229	1	0	0	0	0	1	0	0	0	10201	681	24	2	2272	2	MYT1L	2	1926195	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	256051	1926195	241273178	376	173520											
MYT1L	23040	broad.mit.edu	37	chr2	1983509	1983510	+	Missense_Mutation	DNP	GA	TT	TT													acatacctcgaacccctttgGaccgcgtgcgatgccgcttc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	1983510	TT	TT	1983509	3	4	229	1	0	0	0	0	1	0	0	0	10201	1174	41	3	3593	3	MYT1L	2	1983509	Missense_Mutation	DNP	GA	TCGA-91-6836-01A-21D-1855-08	57314	1983509	241215864	377	173521											
ALLC	55821	broad.mit.edu	37	chr2	3749887	3749887	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaggtttgcccgggccGtgggctcattcggccacaca	13	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3749887	T	T	3749887	1	4	229	0	1	0	0	0	0	0	0	0	534	1160	40	3		3	ALLC	2	3749887	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1766378	3749887	239449486	378	173522											
YWHAQ	10971	broad.mit.edu	37	chr2	9770211	9770211	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagccccggctcacgttTgtttccgtgcccgcgaaact	11	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9770211	A	A	9770211	1	1	229	0	1	0	0	0	0	0	0	0	17632	1827	63	5		5	YWHAQ	2	9770211	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	6020324	9770211	233429162	379	173523											
SMC6	79677	broad.mit.edu	37	chr2	17896314	17896314	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagcaagttctgggtccCgaagatgaatgcaagctcct	10	11	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17896314	A	A	17896314	3	1	229	1	0	0	0	0	1	0	0	0	14901	652	23	1	1783	1	SMC6	2	17896314	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	8126103	17896314	225303059	380	173524											
GDF7	151449	broad.mit.edu	37	chr2	20867364	20867364	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcgcgcggacacgatcaCcggcttcacagaccaggcga	13	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20867364	T	T	20867364	3	4	229	1	0	0	0	0	1	0	0	0	6382	507	18	4	367	4	GDF7	2	20867364	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2971050	20867364	222332009	381	173525											
PFN4	375189	broad.mit.edu	37	chr2	24344110	24344110	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatacagtccttctcttcGggcttgcaaagggttcttgg	11	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24344110	T	T	24344110	2	4	229	1	0	0	0	0	0	0	0	1	11865	1124	39	1		1	PFN4	2	24344110	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3476746	24344110	218855263	382	173526											
NCOA1	8648	broad.mit.edu	37	chr2	24985567	24985567	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttaatagataaatgatccCgcactgagacacacaggcct	7	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24985567	A	A	24985567	2	1	229	1	0	0	0	0	0	0	0	1	10323	639	23	1		1	NCOA1	2	24985567	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	641457	24985567	218213806	383	173527											
DPYSL5	56896	broad.mit.edu	37	chr2	27121306	27121306	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggctttgataggagggatGggaaactggaaacagtgaga	17	3	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27121306	T	T	27121306	1	4	229	0	1	0	0	0	0	0	0	0	4790	1363	47	2		2	DPYSL5	2	27121306	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2135739	27121306	216078067	384	173528											
CAD	790	broad.mit.edu	37	chr2	27463196	27463196	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcttccatctgccgcccCgaatccatcgagcctccgac	8	20	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27463196	A	A	27463196	2	1	229	1	0	0	0	0	0	0	0	1	2591	644	23	1		1	CAD	2	27463196	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	341890	27463196	215736177	385	173529											
CAD	790	broad.mit.edu	37	chr2	27465515	27465515	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgggtgacctgaagcacGgacgcacagtacattccctg	13	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27465515	T	T	27465515	4	4	229	1	0	0	0	0	0	1	0	0	2591	1117	39	1	6412	1	CAD	2	27465515	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2319	27465515	215733858	386	173530											
MPV17	4358	broad.mit.edu	37	chr2	27535925	27535925	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgttcctgcagacccCgcctctccaccagctgctgt	9	17	2	1	rs140992482		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27535925	A	A	27535925	3	1	229	1	0	0	0	0	1	0	0	0	9839	652	23	1	432	1	MPV17	2	27535925	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	70410	27535925	215663448	387	173531											
EIF2B4	8890	broad.mit.edu	37	chr2	27592271	27592271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagccctttaaaagagaccCctcactcaccttgacattgg	6	15	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27592271	A	A	27592271	1	1	229	0	1	0	0	0	0	0	0	0	5043	638	22	2		2	EIF2B4	2	27592271	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	56346	27592271	215607102	388	173532											
RBKS	64080	broad.mit.edu	37	chr2	28004656	28004656	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaagctgtcaccagcaccCtgtaattgaaagcacagttt	7	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28004656	A	A	28004656	1	1	229	0	1	0	0	0	0	0	0	0	13216	695	24	2		2	RBKS	2	28004656	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	412385	28004656	215194717	389	173533											
FAM179A	165186	broad.mit.edu	37	chr2	29268174	29268174	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agcagtgtggccactgacatCccccttctctttcagacaac	7	15	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29268174	T	T	29268174	1	4	229	0	1	0	0	0	0	0	0	0	5550	870	30	4		4	FAM179A	2	29268174	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1263518	29268174	213931199	390	173534											
ALK	238	broad.mit.edu	37	chr2	29420529	29420529	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaagatttcccatagcaGcactccaaaggacctgggca	9	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29420529	T	T	29420529	3	4	229	1	0	0	0	0	1	0	0	0	525	962	34	3	922	3	ALK	2	29420529	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	152355	29420529	213778844	391	173535											
ALK	238	broad.mit.edu	37	chr2	29519816	29519816	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctcaagccttcataggcGgcgacatgccagaccatcct	10	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29519816	T	T	29519816	2	4	229	1	0	0	0	0	0	0	0	1	525	1103	39	1		1	ALK	2	29519816	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	99287	29519816	213679557	392	173536											
LCLAT1	253558	broad.mit.edu	37	chr2	30682519	30682519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aattgtggtgcttctgaaccCatggtcaattaacgaggcag	11	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30682519	A	A	30682519	3	1	229	1	0	0	0	0	1	0	0	0	8749	594	21	2	43	2	LCLAT1	2	30682519	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1162703	30682519	212516854	393	173537											
TTC27	55622	broad.mit.edu	37	chr2	32961790	32961790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtttgctctttgagttGggatgtaccagttcagccct	11	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32961790	T	T	32961790	3	4	229	1	0	0	0	0	1	0	0	0	16821	1339	47	2	1405	2	TTC27	2	32961790	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2279271	32961790	210237583	394	173538											
LTBP1	4052	broad.mit.edu	37	chr2	33572565	33572565	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactgggcagtgccgctccCggacctccacaggtaagtcc	12	15	0	1	rs144093447		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33572565	A	A	33572565	2	1	229	1	0	0	0	0	0	0	0	1	9160	643	23	1		1	LTBP1	2	33572565	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	610775	33572565	209626808	395	173539											
VIT	5212	broad.mit.edu	37	chr2	37035794	37035794	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccagcagtgtggggacGggcaacttccgcaccgtcct	14	14	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37035794	T	T	37035794	2	4	229	1	0	0	0	0	0	0	0	1	17298	1103	39	1		1	VIT	2	37035794	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3463229	37035794	206163579	396	173540											
EIF2AK2	5610	broad.mit.edu	37	chr2	37341881	37341881	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagagaccttacctgttctGggctcatgtatcgcaaagtt	9	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37341881	T	T	37341881	3	4	229	1	0	0	0	0	1	0	0	0	5037	1348	47	2	301	2	EIF2AK2	2	37341881	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	306087	37341881	205857492	397	173541											
DHX57	90957	broad.mit.edu	37	chr2	39090540	39090540	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttgttcttgcaggtctcGgagaagagctttcactttct	9	9	5	2	rs114788980	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39090540	T	T	39090540	2	4	229	1	0	0	0	0	0	0	0	1	4553	1124	39	1		1	DHX57	2	39090540	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1748659	39090540	204108833	398	173542											
OXER1	165140	broad.mit.edu	37	chr2	42990264	42990264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagagaagcagtagagcacGgggtccaggacactgttgag	15	8	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42990264	T	T	42990264	2	4	229	1	0	0	0	0	0	0	0	1	11425	1103	39	1		1	OXER1	2	42990264	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3899724	42990264	200209109	399	173543											
DYNC2LI1	51626	broad.mit.edu	37	chr2	44028893	44028893	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caatctttttttaattgcttAttgattttgtcctactccat	3	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44028893	T	T	44028893	1	4	229	0	1	0	0	0	0	0	0	0	4887	464	16	5		5	DYNC2LI1	2	44028893	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1038629	44028893	199170480	400	173544											
SRBD1	55133	broad.mit.edu	37	chr2	45774069	45774069	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatgcacaaatactattaTatgattctcttattctctca	3	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45774069	C	C	45774069	1	2	229	0	1	0	0	0	0	0	0	0	15251	1421	49	5		5	SRBD1	2	45774069	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1745176	45774069	197425304	401	173545											
PSME4	23198	broad.mit.edu	37	chr2	54148293	54148293	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tttggttaaaagaacaagaaCcaatcattaatgcaaagttc	6	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	54148293	G	G	54148293	1	3	229	0	1	0	0	0	0	0	0	0	12815	522	18	4		4	PSME4	2	54148293	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	8374224	54148293	189051080	402	173546											
USP34	9736	broad.mit.edu	37	chr2	61447538	61447538	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgtgccagtttatttcGgggtgtctgcactgccaacc	12	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	61447538	T	T	61447538	2	4	229	1	0	0	0	0	0	0	0	1	17192	1124	39	1		1	USP34	2	61447538	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	7299245	61447538	181751835	403	173547											
MDH1	4190	broad.mit.edu	37	chr2	63833070	63833070	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtgaaacattgttattttCagggagagtttgtgtccatg	11	4	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63833070	A	A	63833070	1	1	229	0	1	0	0	0	0	0	0	0	9501	841	29	3		3	MDH1	2	63833070	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2385532	63833070	179366303	404	173548											
ACTR2	10097	broad.mit.edu	37	chr2	65480775	65480775	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagttggttacgtttctgTtttggcttccctactgtatt	8	8	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65480775	C	C	65480775	1	2	229	0	1	0	0	0	0	0	0	0	211	1740	60	5		5	ACTR2	2	65480775	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1647705	65480775	177718598	405	173549											
PPP3R1	5534	broad.mit.edu	37	chr2	68415760	68415760	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccacactcaaagaacCagaattgtccaaatcaagct	4	13	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68415760	A	A	68415760	3	1	229	1	0	0	0	0	1	0	0	0	12501	594	21	2	422	2	PPP3R1	2	68415760	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2934985	68415760	174783613	406	173550											
ARHGAP25	9938	broad.mit.edu	37	chr2	69015194	69015194	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgctcaagggagacaacCagaaagcagttctctgcatg	11	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69015194	T	T	69015194	1	4	229	0	1	0	0	0	0	0	0	0	876	609	21	4		4	ARHGAP25	2	69015194	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	599434	69015194	174184179	407	173551											
EXOC6B	23233	broad.mit.edu	37	chr2	73053107	73053107	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttccctgccccacaatgCcgctcccaccacaggctcca	5	21	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	73053107	G	G	73053107	1	3	229	0	1	0	0	0	0	0	0	0	5351	754	26	4		4	EXOC6B	2	73053107	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	4037913	73053107	170146266	408	173552											
C2orf65	130951	broad.mit.edu	37	chr2	74867433	74867433	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagggggaactgtagccAccagctggatattctttaca	11	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74867433	G	G	74867433	1	3	229	0	1	0	0	0	0	0	0	0	2206	174	6	5		5	C2orf65	2	74867433	5'UTR	SNP	A	TCGA-91-6836-01A-21D-1855-08	1814326	74867433	168331940	409	173553											
HK2	3099	broad.mit.edu	37	chr2	75113686	75113686	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaaggagaagaggggcGgatgtgtgtgaacatggaat	20	2	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75113686	T	T	75113686	3	4	229	1	0	0	0	0	1	0	0	0	7258	1116	39	1	2163	1	HK2	2	75113686	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	246253	75113686	168085687	410	173554											
REG3G	130120	broad.mit.edu	37	chr2	79254791	79254791	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaaggaaaagattccagtGcagaggactctagggcagca	13	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79254791	T	T	79254791	1	4	229	0	1	0	0	0	0	0	0	0	13321	1334	46	3		3	REG3G	2	79254791	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4141105	79254791	163944582	411	173555											
REG1A	5967	broad.mit.edu	37	chr2	79350291	79350291	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	taggattccagaaatggaagGatgtgccttgtgaagacaag	13	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79350291	T	T	79350291	3	4	229	1	0	0	0	0	1	0	0	0	13318	1174	41	3	469	3	REG1A	2	79350291	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	95500	79350291	163849082	412	173556											
CTNNA2	1496	broad.mit.edu	37	chr2	80801389	80801389	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttcatcgatgcctctcgcCtggtgtatgatggcgttcgg	13	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	80801389	A	A	80801389	3	1	229	1	0	0	0	0	1	0	0	0	4047	680	24	2	1681	2	CTNNA2	2	80801389	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1451098	80801389	162397984	413	173557											
C2orf89	129293	broad.mit.edu	37	chr2	85059360	85059360	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagaaccaagaaattaccCtgccaagccccctgcctatc	5	17	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85059360	A	A	85059360	1	1	229	0	1	0	0	0	0	0	0	0	2225	696	24	2		2	C2orf89	2	85059360	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4257971	85059360	158140013	414	173558											
MAT2A	4144	broad.mit.edu	37	chr2	85769161	85769161	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cacagaagatccataattttGataatagctaactggaaaaa	6	6	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85769161	T	T	85769161	1	4	229	0	1	0	0	0	0	0	0	0	9422	1305	45	3		3	MAT2A	2	85769161	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	709801	85769161	157430212	415	173559											
SMYD1	150572	broad.mit.edu	37	chr2	88405948	88405948	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attgtttcggaggtcctttcCtacctccaggcctttgagga	10	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88405948	T	T	88405948	2	4	229	1	0	0	0	0	0	0	0	1	14935	668	24	4		4	SMYD1	2	88405948	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2636787	88405948	154793425	416	173560											
MRPS5	64969	broad.mit.edu	37	chr2	95753274	95753274	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagggccacattcctccCggatttccacaacatggagg	11	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95753274	A	A	95753274	3	1	229	1	0	0	0	0	1	0	0	0	9940	652	23	1	175	1	MRPS5	2	95753274	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	7347326	95753274	147446099	417	173561											
PROM2	150696	broad.mit.edu	37	chr2	95944303	95944303	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agcaacgttttgggaagttgAgtcagactgggccaggggat	16	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	95944303	T	T	95944303	1	4	229	0	1	0	0	0	0	0	0	0	12662	319	11	5		5	PROM2	2	95944303	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	191029	95944303	147255070	418	173562											
LMAN2L	81562	broad.mit.edu	37	chr2	97405754	97405754	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccactgctgccacgacccAaggggtcccagagtcgccgc	12	18	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97405754	T	T	97405754	2	4	229	1	0	0	0	0	0	0	0	1	8913	117	5	5		5	LMAN2L	2	97405754	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	1461451	97405754	145793619	419	173563											
ACTR1B	10120	broad.mit.edu	37	chr2	98274518	98274518	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctcatggagcccctcactCtcatccccgacaaggtccgg	8	18	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98274518	A	A	98274518	3	1	229	1	0	0	0	0	1	0	0	0	210	912	32	3	333	3	ACTR1B	2	98274518	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	868764	98274518	144924855	420	173564											
VWA3B	200403	broad.mit.edu	37	chr2	98809316	98809316	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggaagatgctcttgttGcctgcaggctctcaccattc	10	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98809316	T	T	98809316	1	4	229	0	1	0	0	0	0	0	0	0	17368	1334	46	3		3	VWA3B	2	98809316	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	534798	98809316	144390057	421	173565											
C2orf55	343990	broad.mit.edu	37	chr2	99449371	99449371	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattttcttgggaaaacaccCgcacaggccgagtagcgtcc	10	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99449371	A	A	99449371	3	1	229	1	0	0	0	0	1	0	0	0	2198	652	23	1	2587	1	C2orf55	2	99449371	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	640055	99449371	143750002	422	173566											
IL18R1	8809	broad.mit.edu	37	chr2	102979110	102979110	+	5'UTR	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagagaagccatttgaagcaGaatccaaaccatgaattgta	8	8	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102979110	T	T	102979110	1	4	229	0	1	0	0	0	0	0	0	0	7717	957	33	3		3	IL18R1	2	102979110	5'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	3529739	102979110	140220263	423	173567											
SLC9A2	6549	broad.mit.edu	37	chr2	103300812	103300812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtaagtagagtgatccCtttaccaggagggtaaaaaa	11	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103300812	A	A	103300812	1	1	229	0	1	0	0	0	0	0	0	0	14826	696	24	2		2	SLC9A2	2	103300812	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	321702	103300812	139898561	424	173568											
TMEM182	130827	broad.mit.edu	37	chr2	103380886	103380886	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcctatgactctgcagttAgtaagtaccctctgtcctca	6	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103380886	T	T	103380886	3	4	229	1	0	0	0	0	1	0	0	0	16224	434	15	5	341	5	TMEM182	2	103380886	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	80074	103380886	139818487	425	173569											
GCC2	9648	broad.mit.edu	37	chr2	109069095	109069095	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgacctctgggtctctttCtgttctgaaattattattct	6	8	5	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109069095	A	A	109069095	1	1	229	0	1	0	0	0	0	0	0	0	6348	928	32	3		3	GCC2	2	109069095	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5688209	109069095	134130278	426	173570											
GCC2	9648	broad.mit.edu	37	chr2	109086135	109086135	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagatgggagatgcacAtaaggagttggaacaatcac	11	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109086135	T	T	109086135	3	4	229	1	0	0	0	0	1	0	0	0	6348	217	8	5	372	5	GCC2	2	109086135	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	17040	109086135	134113238	427	173571											
LIMS1	3987	broad.mit.edu	37	chr2	109297245	109297245	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtaagtgtacggttttgtCcagtgtgaatcctaagactg	11	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109297245	T	T	109297245	1	4	229	0	1	0	0	0	0	0	0	0	8875	870	30	4		4	LIMS1	2	109297245	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	211110	109297245	133902128	428	173572											
RANBP2	5903	broad.mit.edu	37	chr2	109347393	109347393	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagccaaacacatgatgccCagagaaatttatataagtaa	6	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109347393	A	A	109347393	1	1	229	0	1	0	0	0	0	0	0	0	13136	609	21	2		2	RANBP2	2	109347393	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	50148	109347393	133851980	429	173573											
RANBP2	5903	broad.mit.edu	37	chr2	109352197	109352197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtttagaatggaattcGtgtgttgtacagacccttaa	9	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109352197	T	T	109352197	2	4	229	1	0	0	0	0	0	0	0	1	13136	1132	40	3		3	RANBP2	2	109352197	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	4804	109352197	133847176	430	173574											
RANBP2	5903	broad.mit.edu	37	chr2	109388363	109388363	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaaaatcctctgttccCgctaatcttagtaaaattgg	5	9	3	0	rs17036864	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109388363	A	A	109388363	1	1	229	0	1	0	0	0	0	0	0	0	13136	667	23	1		1	RANBP2	2	109388363	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	36166	109388363	133811010	431	173575											
EDAR	10913	broad.mit.edu	37	chr2	109527319	109527319	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaacaggctggggagagagGagggagtgagcagccaggct	20	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109527319	T	T	109527319	1	4	229	0	1	0	0	0	0	0	0	0	4945	1189	41	3		3	EDAR	2	109527319	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	138956	109527319	133672054	432	173576											
IL1F7	27178	broad.mit.edu	37	chr2	113671411	113671411	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggcccaagcctccccaCcatgaattttgttcacacaa	5	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113671411	A	A	113671411	3	1	229	1	0	0	0	0	1	0	0	0	7725	507	18	3	131	3	IL1F7	2	113671411	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4144092	113671411	129527962	433	173577											
FOXD4L1	200350	broad.mit.edu	37	chr2	114257395	114257395	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagcctggaccccgcctccCaggacatgttcgacaatggc	12	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114257395	A	A	114257395	3	1	229	1	0	0	0	0	1	0	0	0	6058	595	21	2	564	2	FOXD4L1	2	114257395	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	585984	114257395	128941978	434	173578											
DPP10	57628	broad.mit.edu	37	chr2	116485436	116485436	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tactatcaacctgatataaaGagcagttcattgcgactgac	7	9	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	116485436	T	T	116485436	3	4	229	1	0	0	0	0	1	0	0	0	4767	933	33	3	822	3	DPP10	2	116485436	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2228041	116485436	126713937	435	173579											
EN1	2019	broad.mit.edu	37	chr2	119600613	119600613	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgttcttgatgcctgtggcTttcttgatcttggcgcgctt	11	11	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119600613	A	A	119600613	3	1	229	1	0	0	0	0	1	0	0	0	5151	1606	56	5	102	5	EN1	2	119600613	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	3115177	119600613	123598760	436	173580											
PTPN4	5775	broad.mit.edu	37	chr2	120684286	120684286	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatttttttaaaaagatGgattgagtttactaaaaagt	7	1	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	120684286	T	T	120684286	1	4	229	0	1	0	0	0	0	0	0	0	12898	1363	47	2		2	PTPN4	2	120684286	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1083673	120684286	122515087	437	173581											
CLASP1	23332	broad.mit.edu	37	chr2	122286256	122286256	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acatctcttgcccctacctgGggattagcagcttgatccat	8	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122286256	T	T	122286256	2	4	229	1	0	0	0	0	0	0	0	1	3485	1219	43	2		2	CLASP1	2	122286256	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1601970	122286256	120913117	438	173582											
CNTNAP5	129684	broad.mit.edu	37	chr2	125555924	125555924	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggcatgatacccagcGgagtctcagcctgggctgga	15	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	125555924	C	C	125555924	1	2	229	0	1	0	0	0	0	0	0	0	3682	1131	39	4		4	CNTNAP5	2	125555924	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3269668	125555924	117643449	439	173583											
CNTNAP5	129684	broad.mit.edu	37	chr2	125671991	125671991	+	3'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtcttttctggaacataCttgcatccaccacagcatca	5	13	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125671991	T	T	125671991	1	4	229	0	1	0	0	0	0	0	0	0	3682	580	20	4		4	CNTNAP5	2	125671991	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	116067	125671991	117527382	440	173584											
IWS1	55677	broad.mit.edu	37	chr2	128249591	128249591	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttagaccttgactccttgGggtgtttatagagatacatc	10	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128249591	T	T	128249591	3	4	229	1	0	0	0	0	1	0	0	0	8001	1232	43	2	476	2	IWS1	2	128249591	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2577600	128249591	114949782	441	173585											
IWS1	55677	broad.mit.edu	37	chr2	128281334	128281334	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgtctgaccctgaatccCgttcatcctgtactggggta	9	14	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128281334	A	A	128281334	3	1	229	1	0	0	0	0	1	0	0	0	8001	652	23	1	2443	1	IWS1	2	128281334	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	31743	128281334	114918039	442	173586											
LIMS2	55679	broad.mit.edu	37	chr2	128396897	128396897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttgggctgggccttgcGggaggtcagctccgacagct	17	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128396897	T	T	128396897	3	4	229	1	0	0	0	0	1	0	0	0	8876	1116	39	1	44	1	LIMS2	2	128396897	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	115563	128396897	114802476	443	173587											
GPR17	2840	broad.mit.edu	37	chr2	128408589	128408589	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggtctaccacttctctGggaaccactggccatttggg	11	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128408589	T	T	128408589	3	4	229	1	0	0	0	0	1	0	0	0	6732	1348	47	2	370	2	GPR17	2	128408589	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	11692	128408589	114790784	444	173588											
GPR148	344561	broad.mit.edu	37	chr2	131487496	131487496	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgggggcagggctattccCgggccaggggcaccctgctg	17	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131487496	A	A	131487496	2	1	229	1	0	0	0	0	0	0	0	1	6718	643	23	1		1	GPR148	2	131487496	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3078907	131487496	111711877	445	173589											
NCKAP5	344148	broad.mit.edu	37	chr2	133486355	133486355	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagaatcaggaccaacaggTggattgcacccttcacctcc	8	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133486355	A	A	133486355	1	1	229	0	1	0	0	0	0	0	0	0	10318	1711	59	5		5	NCKAP5	2	133486355	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1998859	133486355	109713018	446	173590											
SPOPL	339745	broad.mit.edu	37	chr2	139307978	139307978	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagtgttagaagactggatCgtaggatgttgaacatgtaa	13	3	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139307978	T	T	139307978	1	4	229	0	1	0	0	0	0	0	0	0	15203	899	31	4		4	SPOPL	2	139307978	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5821623	139307978	103891395	447	173591											
LRP1B	53353	broad.mit.edu	37	chr2	141004687	141004687	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcagacttgctgctctttGgggctggcctttcacactgt	11	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141004687	T	T	141004687	3	4	229	1	0	0	0	0	1	0	0	0	9042	1348	47	2	527	2	LRP1B	2	141004687	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1696709	141004687	102194686	448	173592											
LRP1B	53353	broad.mit.edu	37	chr2	141083285	141083285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttttgtattagtatttaaCactctcagtaacaattaaaa	3	5	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141083285	A	A	141083285	1	1	229	0	1	0	0	0	0	0	0	0	9042	493	17	3		3	LRP1B	2	141083285	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	78598	141083285	102116088	449	173593											
LRP1B	53353	broad.mit.edu	37	chr2	141201753	141201753	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttatttagagcttctatcCcagttggcatctatttctaa	5	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141201753	A	A	141201753	1	1	229	0	1	0	0	0	0	0	0	0	9042	638	22	2		2	LRP1B	2	141201753	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	118468	141201753	101997620	450	173594											
LRP1B	53353	broad.mit.edu	37	chr2	141214099	141214100	+	Frame_Shift_Ins	INS	-	T	T													tagtgggacatgcacaagtgINStgggtttttccaggggctaa					rs150113526	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141214100	T	T	141214099	7	5	229	1	0	1	1	0	0	0	0	0	9042	1368	48	0	4031	0	LRP1B	2	141214099	Frame_Shift_Ins	INS	-	TCGA-91-6836-01A-21D-1855-08	12346	141214099	101985274	451	173595											
LRP1B	53353	broad.mit.edu	37	chr2	141819845	141819845	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagtaaagaaaagttttctGttgaaagaaaactaaatgtt	7	3	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141819845	A	A	141819845	1	1	229	0	1	0	0	0	0	0	0	0	9042	1392	48	4		4	LRP1B	2	141819845	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	605746	141819845	101379528	452	173596											
ZEB2	9839	broad.mit.edu	37	chr2	145182048	145182048	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	catatcctaattttaaaataAttttttgcagtcttttaaaa	2	5	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	145182048	G	G	145182048	1	3	229	0	1	0	0	0	0	0	0	0	17750	116	4	5		5	ZEB2	2	145182048	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	3362203	145182048	98017325	453	173597											
KIF5C	3800	broad.mit.edu	37	chr2	149857288	149857288	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aagacctcaaagggctggagGagacagtggtatgtcaagat	14	6	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149857288	T	T	149857288	4	4	229	1	0	0	0	0	0	1	0	0	8377	1175	41	3	2369	3	KIF5C	2	149857288	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4675240	149857288	93342085	454	173598											
LYPD6B	130576	broad.mit.edu	37	chr2	149925138	149925138	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagtggtggcttcaagattTtccttattattatagctcca	7	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	149925138	C	C	149925138	1	2	229	0	1	0	0	0	0	0	0	0	9203	1856	64	5		5	LYPD6B	2	149925138	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	67850	149925138	93274235	455	173599											
NEB	4703	broad.mit.edu	37	chr2	152499151	152499151	+	Nonsense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcatctacccgcatgtcAtaacctttcctcttggcttc	6	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	152499151	C	C	152499151	4	2	229	1	0	0	0	0	0	1	0	0	10397	224	8	5	17868	5	NEB	2	152499151	Nonsense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	2574013	152499151	90700222	456	173600											
NEB	4703	broad.mit.edu	37	chr2	152554106	152554106	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgagcttgaatttgggggtCtcgcagtaatttatgctctt	11	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152554106	T	T	152554106	2	4	229	1	0	0	0	0	0	0	0	1	10397	912	32	4		4	NEB	2	152554106	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	54955	152554106	90645267	457	173601											
NR4A2	4929	broad.mit.edu	37	chr2	157186376	157186376	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcatctcctcagactggGggggcaggtggctgtgttgc	16	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	157186376	T	T	157186376	3	4	229	1	0	0	0	0	1	0	0	0	10728	1232	43	2	1497	2	NR4A2	2	157186376	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4632270	157186376	86012997	458	173602											
GPD2	2820	broad.mit.edu	37	chr2	157427750	157427750	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcagaggaagccctaccCaggattgttgaactgatggg	14	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157427750	A	A	157427750	2	1	229	1	0	0	0	0	0	0	0	1	6671	581	21	2		2	GPD2	2	157427750	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	241374	157427750	85771623	459	173603											
PLA2R1	22925	broad.mit.edu	37	chr2	160885355	160885355	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcaaagaaaacactgcGggtacctgggctccaattca	11	10	1	1	rs140344767	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160885355	T	T	160885355	1	4	229	0	1	0	0	0	0	0	0	0	12105	1131	39	1		1	PLA2R1	2	160885355	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3457605	160885355	82314018	460	173604											
ITGB6	3694	broad.mit.edu	37	chr2	161052001	161052001	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatctctttggaaagccGggagcccagctcctttattg	10	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161052001	T	T	161052001	2	4	229	1	0	0	0	0	0	0	0	1	7969	1115	39	1		1	ITGB6	2	161052001	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	166646	161052001	82147372	461	173605											
SCN2A	6326	broad.mit.edu	37	chr2	166170469	166170469	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgctggtcattttcttgGgctcattctatctaataaat	7	7	5	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	166170469	T	T	166170469	3	4	229	1	0	0	0	0	1	0	0	0	14029	1232	43	2	1364	2	SCN2A	2	166170469	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5118468	166170469	77028904	462	173606											
CSRNP3	80034	broad.mit.edu	37	chr2	166533020	166533020	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagaaaagcacgaactcCgagccatccgcctctcacga	9	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166533020	A	A	166533020	2	1	229	1	0	0	0	0	0	0	0	1	3999	644	23	1		1	CSRNP3	2	166533020	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	362551	166533020	76666353	463	173607											
G6PC2	57818	broad.mit.edu	37	chr2	169764212	169764212	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttagggtgctcaacattGacctgctgtggtccgtgccc	11	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	169764212	T	T	169764212	3	4	229	1	0	0	0	0	1	0	0	0	6204	1290	45	3	709	3	G6PC2	2	169764212	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3231192	169764212	73435161	464	173608											
ABCB11	8647	broad.mit.edu	37	chr2	169851962	169851962	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttctcattttctgtatctGacgagctgcggcaatgaccc	8	11	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169851962	C	C	169851962	3	2	229	1	0	0	0	0	1	0	0	0	42	1299	45	4	3545	4	ABCB11	2	169851962	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	87750	169851962	73347411	465	173609											
LRP2	4036	broad.mit.edu	37	chr2	170093517	170093517	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gggatcattttaaattttgcAtatcagcaacatgcatatca	6	7	3	0	rs77595542	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170093517	T	T	170093517	1	4	229	0	1	0	0	0	0	0	0	0	9043	232	8	5		5	LRP2	2	170093517	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	241555	170093517	73105856	466	173610											
GORASP2	26003	broad.mit.edu	37	chr2	171818188	171818188	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaggtgtaccaacagtacCgttattgccaccacaagtaa	7	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	171818188	A	A	171818188	3	1	229	1	0	0	0	0	1	0	0	0	6640	652	23	1	869	1	GORASP2	2	171818188	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1724671	171818188	71381185	467	173611											
WIPF1	7456	broad.mit.edu	37	chr2	175436859	175436859	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaagcagtgccgcggTttccagggaaagggggagga	16	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175436859	A	A	175436859	3	1	229	1	0	0	0	0	1	0	0	0	17494	1725	60	5	853	5	WIPF1	2	175436859	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	3618671	175436859	67762514	468	173612											
PDE11A	50940	broad.mit.edu	37	chr2	178705175	178705175	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttttcttgaaaggaaaccCtataaactacactaatatca	4	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	178705175	A	A	178705175	1	1	229	0	1	0	0	0	0	0	0	0	11725	696	24	2		2	PDE11A	2	178705175	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3268316	178705175	64494198	469	173613											
RBM45	129831	broad.mit.edu	37	chr2	178977175	178977175	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctttctcccggaagcGgagcaccgagccggcaaagg	12	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	178977175	T	T	178977175	1	4	229	0	1	0	0	0	0	0	0	0	13247	1131	39	1		1	RBM45	2	178977175	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	272000	178977175	64222198	470	173614											
FKBP7	51661	broad.mit.edu	37	chr2	179341714	179341714	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtgctttcaattctttcaGacctatatacccagaaatct	4	11	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179341714	A	A	179341714	1	1	229	0	1	0	0	0	0	0	0	0	5970	957	33	4		4	FKBP7	2	179341714	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	364539	179341714	63857659	471	173615											
FKBP7	51661	broad.mit.edu	37	chr2	179343274	179343274	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcgtgtcactcgcgcccCgtggatgtcccgcggccgag	14	18	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179343274	A	A	179343274	1	1	229	0	1	0	0	0	0	0	0	0	5970	667	23	1		1	FKBP7	2	179343274	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	1560	179343274	63856099	472	173616											
TTN	7273	broad.mit.edu	37	chr2	179410892	179410892	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagatcattctttctgccCacactggaaaatgctatata	6	9	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	179410892	A	A	179410892	1	1	229	0	1	0	0	0	0	0	0	0	16861	609	21	2		2	TTN	2	179410892	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	67618	179410892	63788481	473	173617											
TTN	7273	broad.mit.edu	37	chr2	179451811	179451811	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctaaaataggagactGgggttaaaaggaggaagaaa	13	4	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179451811	T	T	179451811	1	4	229	0	1	0	0	0	0	0	0	0	16861	1363	47	2		2	TTN	2	179451811	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	40919	179451811	63747562	474	173618											
TTN	7273	broad.mit.edu	37	chr2	179457751	179457751	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	acgtggtggctgccaagttaGatcgactgaattgcatgttg	13	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	179457751	C	C	179457751	3	2	229	1	0	0	0	0	1	0	0	0	16861	933	33	4	49136	4	TTN	2	179457751	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5940	179457751	63741622	475	173619											
TTN	7273	broad.mit.edu	37	chr2	179554580	179554580	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttctttgcaacaggaacGggaatcttttcttcagggac	9	8	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179554580	T	T	179554580	2	4	229	1	0	0	0	0	0	0	0	1	16861	1103	39	1		1	TTN	2	179554580	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	96829	179554580	63644793	476	173620											
TTN	7273	broad.mit.edu	37	chr2	179605489	179605489	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggagaaggttttctgGgactgtacaatctgcagctg	12	7	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	179605489	T	T	179605489	2	4	229	1	0	0	0	0	0	0	0	1	16861	1219	43	2		2	TTN	2	179605489	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	50909	179605489	63593884	477	173621											
ITGA4	3676	broad.mit.edu	37	chr2	182374253	182374253	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatcttcatttttttaacGgtttagataaaagataagta	5	4	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	182374253	T	T	182374253	1	4	229	0	1	0	0	0	0	0	0	0	7948	1131	39	1		1	ITGA4	2	182374253	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2768764	182374253	60825120	478	173622											
ZNF804A	91752	broad.mit.edu	37	chr2	185801036	185801036	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtctctagtgaaaaagatGcattattattaccttcattt	5	6	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185801036	A	A	185801036	3	1	229	1	0	0	0	0	1	0	0	0	18299	1319	46	4	927	4	ZNF804A	2	185801036	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3426783	185801036	57398337	479	173623											
WDR75	84128	broad.mit.edu	37	chr2	190327291	190327291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaataaggagtttctccCgcgtttaggagctactattg	11	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190327291	A	A	190327291	3	1	229	1	0	0	0	0	1	0	0	0	17452	652	23	1	894	1	WDR75	2	190327291	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4526255	190327291	52872082	480	173624											
HIBCH	26275	broad.mit.edu	37	chr2	191184537	191184537	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cccggaccgttccagcgcctCgcgtgagccccgcccaccgc	11	22	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	191184537	A	A	191184537	1	1	229	0	1	0	0	0	0	0	0	0	7167	899	31	3		3	HIBCH	2	191184537	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	857246	191184537	52014836	481	173625											
SDPR	8436	broad.mit.edu	37	chr2	192701173	192701173	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcttgttcatctttttctCgatgttctggcgagaaaatg	9	8	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	192701173	A	A	192701173	4	1	229	1	0	0	0	0	0	1	0	0	14083	893	31	3	527	3	SDPR	2	192701173	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1516636	192701173	50498200	482	173626											
DNAH7	56171	broad.mit.edu	37	chr2	196865350	196865350	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgaagcagaggataccTgccttcaactttcagaagtt	9	9	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	196865350	A	A	196865350	1	1	229	0	1	0	0	0	0	0	0	0	4646	1595	55	5		5	DNAH7	2	196865350	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	4164177	196865350	46334023	483	173627											
HECW2	57520	broad.mit.edu	37	chr2	197189859	197189859	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacatccctttctttagccCaactgccctaagatctttaa	4	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	197189859	A	A	197189859	3	1	229	1	0	0	0	0	1	0	0	0	7110	594	21	2	4228	2	HECW2	2	197189859	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	324509	197189859	46009514	484	173628											
SATB2	23314	broad.mit.edu	37	chr2	200298192	200298192	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctgttgtcatattcaagaGagccgtccaactgctccacg	8	13	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	200298192	A	A	200298192	3	1	229	1	0	0	0	0	1	0	0	0	13966	942	33	4	2022	4	SATB2	2	200298192	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3108333	200298192	42901181	485	173629											
SGOL2	151246	broad.mit.edu	37	chr2	201434433	201434433	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgaagataaagagaaaaTgcagtgtgacaacaatatta	9	3	0	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201434433	A	A	201434433	3	1	229	1	0	0	0	0	1	0	0	0	14330	1464	51	5	539	5	SGOL2	2	201434433	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	1136241	201434433	41764940	486	173630											
AOX1	316	broad.mit.edu	37	chr2	201477353	201477353	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaatttgtgtcagccttcCgacaagcccagcgacaggag	13	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	201477353	A	A	201477353	2	1	229	1	0	0	0	0	0	0	0	1	731	644	23	1		1	AOX1	2	201477353	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	42920	201477353	41722020	487	173631											
AOX1	316	broad.mit.edu	37	chr2	201534297	201534297	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggcatgcttcctttcaaGggtctgggagagtcgggggt	17	7	2	1	rs143972260		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	201534297	T	T	201534297	5	4	229	1	0	0	0	0	0	0	1	0	731	1014	35	2	3932	2	AOX1	2	201534297	Splice_Site	SNP	G	TCGA-91-6836-01A-21D-1855-08	56944	201534297	41665076	488	173632											
WDR12	55759	broad.mit.edu	37	chr2	203748904	203748904	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacacatatattcccccagTggtttacatgactcaccttt	4	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	203748904	A	A	203748904	1	1	229	0	1	0	0	0	0	0	0	0	17401	1711	59	5		5	WDR12	2	203748904	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2214607	203748904	39450469	489	173633											
WDR12	55759	broad.mit.edu	37	chr2	203776157	203776157	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggctggaacgcttacttActtcttgttatcagtgtaga	10	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	203776157	G	G	203776157	1	3	229	0	1	0	0	0	0	0	0	0	17401	405	14	5		5	WDR12	2	203776157	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	27253	203776157	39423216	490	173634											
NBEAL1	65065	broad.mit.edu	37	chr2	204058503	204058503	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	atatggaattgtttttccttAaaattattttgaaggaacca	6	4	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	204058503	T	T	204058503	1	4	229	0	1	0	0	0	0	0	0	0	10282	377	13	5		5	NBEAL1	2	204058503	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	282346	204058503	39140870	491	173635											
NDUFS1	4719	broad.mit.edu	37	chr2	206997805	206997805	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agaactgcctaaaaccaccaTtggttttttagcttccttta	5	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	206997805	G	G	206997805	3	3	229	1	0	0	0	0	1	0	0	0	10386	1493	52	5	790	5	NDUFS1	2	206997805	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	2939302	206997805	36201568	492	173636											
PIKFYVE	200576	broad.mit.edu	37	chr2	209214844	209214844	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atatcattggtttggggagaGggactacagttgagccatct	13	6	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	209214844	A	A	209214844	1	1	229	0	1	0	0	0	0	0	0	0	12019	1015	35	4		4	PIKFYVE	2	209214844	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2217039	209214844	33984529	493	173637											
ERBB4	2066	broad.mit.edu	37	chr2	212543799	212543799	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatagaggttacaagactCtatgcagatccttcctctac	6	11	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	212543799	G	G	212543799	3	3	229	1	0	0	0	0	1	0	0	0	5251	922	32	4	2390	4	ERBB4	2	212543799	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3328955	212543799	30655574	494	173638											
FN1	2335	broad.mit.edu	37	chr2	216243981	216243981	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattgggtggtgtccactGggcgctcaggcttgtgggtg	17	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	216243981	T	T	216243981	3	4	229	1	0	0	0	0	1	0	0	0	6020	1357	47	2	1991	2	FN1	2	216243981	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3700182	216243981	26955392	495	173639											
SMARCAL1	50485	broad.mit.edu	37	chr2	217300022	217300022	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaacagctgctgtgctgGgtggtcattgtagctttgtt	12	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	217300022	T	T	217300022	1	4	229	0	1	0	0	0	0	0	0	0	14887	1247	43	2		2	SMARCAL1	2	217300022	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1056041	217300022	25899351	496	173640											
TNS1	7145	broad.mit.edu	37	chr2	218713852	218713852	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagacaacagacaacagaCattagcgggaggcaggggta	16	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	218713852	T	T	218713852	1	4	229	0	1	0	0	0	0	0	0	0	16466	493	17	4		4	TNS1	2	218713852	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1413830	218713852	24485521	497	173641											
ZNF142	7701	broad.mit.edu	37	chr2	219508601	219508601	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcaggtgggtgctgaggcCgcgttgttgcttgaagctag	17	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	219508601	T	T	219508601	3	4	229	1	0	0	0	0	1	0	0	0	17857	652	23	4	2437	4	ZNF142	2	219508601	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	794749	219508601	23690772	498	173642											
CYP27A1	1593	broad.mit.edu	37	chr2	219674379	219674379	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtgaacctggccagtgcccCgctcttggagcaagtgatgc	13	13	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	219674379	A	A	219674379	3	1	229	1	0	0	0	0	1	0	0	0	4191	652	23	1	341	1	CYP27A1	2	219674379	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	165778	219674379	23524994	499	173643											
STK16	8576	broad.mit.edu	37	chr2	220112047	220112047	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggaggtctctgttctcCcaagaaacagcctgtatgat	10	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220112047	A	A	220112047	1	1	229	0	1	0	0	0	0	0	0	0	15407	638	22	2		2	STK16	2	220112047	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	437668	220112047	23087326	500	173644											
PTPRN	5798	broad.mit.edu	37	chr2	220172515	220172515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttgggcctcactcaccCtgaatacagacttccaggtg	9	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220172515	A	A	220172515	3	1	229	1	0	0	0	0	1	0	0	0	12915	695	24	2	2862	2	PTPRN	2	220172515	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	60468	220172515	23026858	501	173645											
DNPEP	23549	broad.mit.edu	37	chr2	220250940	220250940	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccacccctcttccccacGggtaccctgaggagtgtggc	10	19	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220250940	T	T	220250940	1	4	229	0	1	0	0	0	0	0	0	0	4719	1131	39	1		1	DNPEP	2	220250940	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	78425	220250940	22948433	502	173646											
DES	1674	broad.mit.edu	37	chr2	220284978	220284978	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggcctctcccaggacgtGgatgcagctactctagctcg	11	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	220284978	T	T	220284978	2	4	229	1	0	0	0	0	0	0	0	1	4489	1335	47	2		2	DES	2	220284978	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	34038	220284978	22914395	503	173647											
CHPF	79586	broad.mit.edu	37	chr2	220406483	220406483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcgcgacagcagcaccCcaaagcctccgtggcagtag	12	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220406483	A	A	220406483	3	1	229	1	0	0	0	0	1	0	0	0	3399	623	22	2	1596	2	CHPF	2	220406483	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	121505	220406483	22792890	504	173648											
OBSL1	23363	broad.mit.edu	37	chr2	220424129	220424129	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgcacaggggcatcctccCgagacagttcacacatcagc	10	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220424129	A	A	220424129	3	1	229	1	0	0	0	0	1	0	0	0	10908	652	23	1	2721	1	OBSL1	2	220424129	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	17646	220424129	22775244	505	173649											
STK11IP	114790	broad.mit.edu	37	chr2	220467116	220467116	+	Intron	DEL	G	-	-													taaaaaatgaatgagtgactGggtggtagagcttggccttg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	220467116	-	-	220467116	6	5	229	0	1	1	0	1	0	0	0	0	15406	1363	47	0		0	STK11IP	2	220467116	Intron	DEL	G	TCGA-91-6836-01A-21D-1855-08	42987	220467116	22732257	506	173650											
SLC4A3	6508	broad.mit.edu	37	chr2	220493252	220493252	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcccccggcctgggacccCgagaagcccagccgcagcta	12	18	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	220493252	A	A	220493252	2	1	229	1	0	0	0	0	0	0	0	1	14769	639	23	1		1	SLC4A3	2	220493252	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	26136	220493252	22706121	507	173651											
MOGAT1	116255	broad.mit.edu	37	chr2	223559351	223559351	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gattttctagcccttaaagaCctcctccaaatcgatctgac	5	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	223559351	T	T	223559351	1	4	229	0	1	0	0	0	0	0	0	0	9788	522	18	4		4	MOGAT1	2	223559351	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3066099	223559351	19640022	508	173652											
CUL3	8452	broad.mit.edu	37	chr2	225364088	225364088	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gacacttaagacaattactaGaatcattaagactaaggtga	7	6	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	225364088	T	T	225364088	1	4	229	0	1	0	0	0	0	0	0	0	4089	957	33	3		3	CUL3	2	225364088	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1804737	225364088	17835285	509	173653											
DOCK10	55619	broad.mit.edu	37	chr2	225657959	225657959	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtcaatggcatgatagacTtaaaatgtttaaagtacagc	8	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	225657959	G	G	225657959	1	3	229	0	1	0	0	0	0	0	0	0	4725	1624	56	5		5	DOCK10	2	225657959	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	293871	225657959	17541414	510	173654											
DNER	92737	broad.mit.edu	37	chr2	230231494	230231494	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccattctttaaaatctcCtctttgcaaatggaaagtcc	4	10	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	230231494	A	A	230231494	1	1	229	0	1	0	0	0	0	0	0	0	4707	696	24	2		2	DNER	2	230231494	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4573535	230231494	12967879	511	173655											
DNER	92737	broad.mit.edu	37	chr2	230231815	230231815	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaggctctccgccatgtGcccggacttccattggaggt	14	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	230231815	T	T	230231815	3	4	229	1	0	0	0	0	1	0	0	0	4707	1319	46	3	345	3	DNER	2	230231815	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	321	230231815	12967558	512	173656											
SP100	6672	broad.mit.edu	37	chr2	231314950	231314950	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagggagatgccctgccCgttgccctgtgatgaagaaa	14	9	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	231314950	A	A	231314950	3	1	229	1	0	0	0	0	1	0	0	0	15074	652	23	1	830	1	SP100	2	231314950	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1083135	231314950	11884423	513	173657											
ATG16L1	55054	broad.mit.edu	37	chr2	234178661	234178661	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacaggaggcggcaagccCggctgcagaaagagcttgca	14	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	234178661	A	A	234178661	2	1	229	1	0	0	0	0	0	0	0	1	1095	643	23	1		1	ATG16L1	2	234178661	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2863711	234178661	9020712	514	173658											
TRPM8	79054	broad.mit.edu	37	chr2	234835313	234835313	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagcgtaagtcatgcgcAtcacctgtttgaaaggttat	10	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	234835313	G	G	234835313	1	3	229	0	1	0	0	0	0	0	0	0	16717	232	8	5		5	TRPM8	2	234835313	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	656652	234835313	8364060	515	173659											
PDCD1	5133	broad.mit.edu	37	chr2	242793526	242793526	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcggctccacagcctggctGcagtaccggcaccgaacctg	12	17	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	242793526	C	C	242793526	1	2	229	0	1	0	0	0	0	0	0	0	11709	1334	46	4		4	PDCD1	2	242793526	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	7958213	242793526	405847	516	173660											
CHL1	10752	broad.mit.edu	37	chr3	431184	431184	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcacctaaaactgctaaGcacgtcagtaactgttgctt	8	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	431184	T	T	431184	1	4	229	0	1	0	0	0	0	0	0	0	3380	986	34	3		3	CHL1	3	431184	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08		431184	197591246	517	173661											
ITPR1	3708	broad.mit.edu	37	chr3	4681163	4681163	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgatccaggtaggtcaAggcagctcttcccttctgaa	10	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4681163	T	T	4681163	1	4	229	0	1	0	0	0	0	0	0	0	7990	87	3	5		5	ITPR1	3	4681163	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	4249979	4681163	193341267	518	173662											
GRM7	2917	broad.mit.edu	37	chr3	7620333	7620333	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accggatgccaggatattccCatcatcaaactggagtggca	10	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7620333	T	T	7620333	2	4	229	1	0	0	0	0	0	0	0	1	6868	581	21	4		4	GRM7	3	7620333	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2939170	7620333	190402097	519	173663											
TADA3	10474	broad.mit.edu	37	chr3	9828800	9828800	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggcatccacatctaagcGggcacaggaaaggaggggag	16	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9828800	T	T	9828800	1	4	229	0	1	0	0	0	0	0	0	0	15631	1131	39	1		1	TADA3	3	9828800	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2208467	9828800	188193630	520	173664											
FANCD2	2177	broad.mit.edu	37	chr3	10089740	10089740	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtactgccagcaggtatGttgaaacatttattttggca	9	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10089740	T	T	10089740	1	4	229	0	1	0	0	0	0	0	0	0	5722	1392	48	3		3	FANCD2	3	10089740	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	260940	10089740	187932690	521	173665											
FANCD2	2177	broad.mit.edu	37	chr3	10106319	10106319	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcttctaatttctccccatGatgttgtgtttgaaattggt	7	7	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10106319	T	T	10106319	1	4	229	0	1	0	0	0	0	0	0	0	5722	1305	45	3		3	FANCD2	3	10106319	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	16579	10106319	187916111	522	173666											
WNT7A	7476	broad.mit.edu	37	chr3	13916469	13916469	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgagctccttcccgaagacGgtgcgctctcccagtgcaga	11	14	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	13916469	C	C	13916469	2	2	229	1	0	0	0	0	0	0	0	1	17521	1103	39	4		4	WNT7A	3	13916469	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3810150	13916469	184105961	523	173667											
XPC	7508	broad.mit.edu	37	chr3	14199735	14199735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaggctggcccaccacacCgtgcacacagtctacacata	8	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14199735	A	A	14199735	3	1	229	1	0	0	0	0	1	0	0	0	17568	652	23	1		1	XPC	3	14199735	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	283266	14199735	183822695	524	173668											
DAZL	1618	broad.mit.edu	37	chr3	16646700	16646700	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcccctcgggcctctccCtcaactcaccatgatggcgg	9	18	3	1	rs150308411	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	16646700	A	A	16646700	1	1	229	0	1	0	0	0	0	0	0	0	4279	696	24	2		2	DAZL	3	16646700	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2446965	16646700	181375730	525	173669											
PLCL2	23228	broad.mit.edu	37	chr3	17051810	17051810	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaaggacaaagctggtacCgaggtcacaaaggaagaatt	11	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17051810	A	A	17051810	2	1	229	1	0	0	0	0	0	0	0	1	12135	639	23	1		1	PLCL2	3	17051810	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	405110	17051810	180970620	526	173670											
ZNF385D	79750	broad.mit.edu	37	chr3	21462854	21462854	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaactcactgccactgctGctgcggctgctgcagctgct	13	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21462854	T	T	21462854	3	4	229	1	0	0	0	0	1	0	0	0	18004	1319	46	3	151	3	ZNF385D	3	21462854	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4411044	21462854	176559576	527	173671											
NGLY1	55768	broad.mit.edu	37	chr3	25761683	25761683	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctttcgggccaaatatacCtataaggagtagggatgggg	13	7	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25761683	A	A	25761683	5	1	229	1	0	0	0	0	0	0	1	0	10493	695	24	2	361	2	NGLY1	3	25761683	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	4298829	25761683	172260747	528	173672											
TRIM71	131405	broad.mit.edu	37	chr3	32915240	32915240	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgtgagagccagggccctCcagttgctgtcttccctcct	11	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32915240	T	T	32915240	1	4	229	0	1	0	0	0	0	0	0	0	16669	870	30	4		4	TRIM71	3	32915240	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7153557	32915240	165107190	529	173673											
ITGA9	3680	broad.mit.edu	37	chr3	37627016	37627016	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggatttcttagcatgccCgttgggacaattagggaggg	15	6	1	0	rs149921887	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37627016	A	A	37627016	1	1	229	0	1	0	0	0	0	0	0	0	7953	667	23	1		1	ITGA9	3	37627016	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4711776	37627016	160395414	530	173674											
ITGA9	3680	broad.mit.edu	37	chr3	37670703	37670703	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcaggacgtcatcagccCgatcgtgtttgaagcagcct	13	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37670703	A	A	37670703	3	1	229	1	0	0	0	0	1	0	0	0	7953	652	23	1	1777	1	ITGA9	3	37670703	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	43687	37670703	160351727	531	173675											
EIF1B	10289	broad.mit.edu	37	chr3	40351499	40351499	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgcctccctcccttgccCggcgcgcatctcggcctttt	9	21	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40351499	A	A	40351499	1	1	229	0	1	0	0	0	0	0	0	0	5034	667	23	1		1	EIF1B	3	40351499	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2680796	40351499	157670931	532	173676											
TRAK1	22906	broad.mit.edu	37	chr3	42167007	42167007	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagagccgacaccatctacGgttatgaccacgacgactgg	10	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42167007	T	T	42167007	3	4	229	1	0	0	0	0	1	0	0	0	16573	1116	39	1	193	1	TRAK1	3	42167007	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1815508	42167007	155855423	533	173677											
CYP8B1	1582	broad.mit.edu	37	chr3	42917186	42917186	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatggcatggccaagccaGggcacggtacccttgtccag	13	14	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	42917186	C	C	42917186	2	2	229	1	0	0	0	0	0	0	0	1	4231	987	35	4		4	CYP8B1	3	42917186	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	750179	42917186	155105244	534	173678											
CDCP1	64866	broad.mit.edu	37	chr3	45127319	45127319	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcatatggtgggtggggaGggaggacagacccccatggt	19	7	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45127319	T	T	45127319	2	4	229	1	0	0	0	0	0	0	0	1	3123	987	35	2		2	CDCP1	3	45127319	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2210133	45127319	152895111	535	173679											
LARS2	23395	broad.mit.edu	37	chr3	45436077	45436077	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagcatctacagtgccacGggaaagtggacaaaagagta	12	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45436077	T	T	45436077	2	4	229	1	0	0	0	0	0	0	0	1	8707	1103	39	1		1	LARS2	3	45436077	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	308758	45436077	152586353	536	173680											
LARS2	23395	broad.mit.edu	37	chr3	45517811	45517811	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcagcttcttccaggcacCatctcaatccccacacccct	3	20	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45517811	T	T	45517811	1	4	229	0	1	0	0	0	0	0	0	0	8707	609	21	4		4	LARS2	3	45517811	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	81734	45517811	152504619	537	173681											
CCR5	1234	broad.mit.edu	37	chr3	46415414	46415414	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaagctcagtttacaccCgatccactggggagcaggaa	12	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46415414	A	A	46415414	2	1	229	1	0	0	0	0	0	0	0	1	2974	644	23	1		1	CCR5	3	46415414	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	897603	46415414	151607016	538	173682											
LTF	4057	broad.mit.edu	37	chr3	46479431	46479431	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagctagggtctacttacGggaggttgagcactttttca	12	8	2	1	rs137886255		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46479431	T	T	46479431	3	4	229	1	0	0	0	0	1	0	0	0	9166	1130	39	1	42	1	LTF	3	46479431	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	64017	46479431	151542999	539	173683											
PTH1R	5745	broad.mit.edu	37	chr3	46945231	46945231	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgatttcccactcaggGctggggccaagaggaaaaac	12	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46945231	A	A	46945231	1	1	229	0	1	0	0	0	0	0	0	0	12864	1218	42	4		4	PTH1R	3	46945231	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	465800	46945231	151077199	540	173684											
KIF9	64147	broad.mit.edu	37	chr3	47308467	47308467	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcccccatcacttaccCcagacttccccagcctctct	3	22	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47308467	A	A	47308467	3	1	229	1	0	0	0	0	1	0	0	0	8380	637	22	2	1665	2	KIF9	3	47308467	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	363236	47308467	150713963	541	173685											
MAP4	4134	broad.mit.edu	37	chr3	47912407	47912407	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggccaggcggctgagccGgggggtggtggagctgggtt	24	7	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47912407	T	T	47912407	2	4	229	1	0	0	0	0	0	0	0	1	9350	1115	39	1		1	MAP4	3	47912407	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	603940	47912407	150110023	542	173686											
COL7A1	1294	broad.mit.edu	37	chr3	48610750	48610750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgagctaggccactcaccCgtcctggaggtcctgtctct	11	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48610750	A	A	48610750	3	1	229	1	0	0	0	0	1	0	0	0	3736	666	23	1	2328	1	COL7A1	3	48610750	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	698343	48610750	149411680	543	173687											
COL7A1	1294	broad.mit.edu	37	chr3	48629362	48629362	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccattccaaccggtagccAcgggcctcaggcaccaagtt	10	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48629362	T	T	48629362	2	4	229	1	0	0	0	0	0	0	0	1	3736	146	6	5		5	COL7A1	3	48629362	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	18612	48629362	149393068	544	173688											
TMEM89	440955	broad.mit.edu	37	chr3	48658286	48658286	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catgttcggtcacccactctGggtggaagtcccctttattt	9	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48658286	T	T	48658286	3	4	229	1	0	0	0	0	1	0	0	0	16336	1357	47	2	13	2	TMEM89	3	48658286	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	28924	48658286	149364144	545	173689											
SLC25A20	788	broad.mit.edu	37	chr3	48929293	48929293	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agggtggcgtggtgaaggagCggcagctgtgagctagctgt	20	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48929293	A	A	48929293	1	1	229	0	1	0	0	0	0	0	0	0	14597	783	27	3		3	SLC25A20	3	48929293	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	271007	48929293	149093137	546	173690											
LAMB2	3913	broad.mit.edu	37	chr3	49159605	49159605	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggtcagaccttgcccgcCgtgcatcctgcagtagctgc	13	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49159605	A	A	49159605	3	1	229	1	0	0	0	0	1	0	0	0	8683	652	23	1	644	1	LAMB2	3	49159605	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	230312	49159605	148862825	547	173691											
UBA7	7318	broad.mit.edu	37	chr3	49847961	49847961	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactcacaccaacgtcctGggacctgaagaggaactgac	10	13	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49847961	T	T	49847961	3	4	229	1	0	0	0	0	1	0	0	0	16959	1357	47	2	1634	2	UBA7	3	49847961	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	688356	49847961	148174469	548	173692											
UBA7	7318	broad.mit.edu	37	chr3	49850106	49850106	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgtgctggatggcagctGtcaggggttctgcctctgtg	16	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49850106	C	C	49850106	3	2	229	1	0	0	0	0	1	0	0	0	16959	1377	48	4	2585	4	UBA7	3	49850106	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2145	49850106	148172324	549	173693											
CAMKV	79012	broad.mit.edu	37	chr3	49899660	49899660	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gccttagcatcagctgcactCcactgccacttccctagccc	6	19	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49899660	A	A	49899660	1	1	229	0	1	0	0	0	0	0	0	0	2634	870	30	3		3	CAMKV	3	49899660	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	49554	49899660	148122770	550	173694											
DOCK3	1795	broad.mit.edu	37	chr3	51264674	51264674	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagaaatccagacattccTaccaggaagatgacatctta	6	11	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51264674	A	A	51264674	1	1	229	0	1	0	0	0	0	0	0	0	4728	1537	53	5		5	DOCK3	3	51264674	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1365014	51264674	146757756	551	173695											
ACY1	95	broad.mit.edu	37	chr3	52020577	52020577	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtaggaggctgctagtgGggactgagctgctccaccct	16	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52020577	T	T	52020577	1	4	229	0	1	0	0	0	0	0	0	0	226	1247	43	2		2	ACY1	3	52020577	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	755903	52020577	146001853	552	173696											
ITIH1	3697	broad.mit.edu	37	chr3	52816028	52816028	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctacatccttactgaacGggcacttcaaggtgacctac	8	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52816028	T	T	52816028	3	4	229	1	0	0	0	0	1	0	0	0	7973	1116	39	1	786	1	ITIH1	3	52816028	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	795451	52816028	145206402	553	173697											
SFMBT1	51460	broad.mit.edu	37	chr3	53003138	53003138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcaagctgctgctcccCgttcatttccacagcatata	6	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53003138	A	A	53003138	3	1	229	1	0	0	0	0	1	0	0	0	14270	652	23	1	2673	1	SFMBT1	3	53003138	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	187110	53003138	145019292	554	173698											
SELK	58515	broad.mit.edu	37	chr3	53922561	53922561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgctacaaatccctaaccCaagaggcatcacatttaatt	5	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53922561	A	A	53922561	1	1	229	0	1	0	0	0	0	0	0	0	14128	609	21	2		2	SELK	3	53922561	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	919423	53922561	144099869	555	173699											
CACNA2D3	55799	broad.mit.edu	37	chr3	54676165	54676165	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccctagttcaaccacaCgggacaaggaagtatctgca	8	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54676165	A	A	54676165	3	1	229	1	0	0	0	0	1	0	0	0	2576	536	19	3	1106	3	CACNA2D3	3	54676165	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	753604	54676165	143346265	556	173700											
ERC2	26059	broad.mit.edu	37	chr3	56468741	56468741	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaatattgggactactccCcatggctgtgacacggcctc	10	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56468741	A	A	56468741	3	1	229	1	0	0	0	0	1	0	0	0	5253	623	22	2	2632	2	ERC2	3	56468741	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1792576	56468741	141553689	557	173701											
SLMAP	7871	broad.mit.edu	37	chr3	57898147	57898147	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcgatactgagaatctccGggaggagaaggacagtgaaa	13	7	1	3	rs138744399		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57898147	T	T	57898147	3	4	229	1	0	0	0	0	1	0	0	0	14863	1116	39	1	1703	1	SLMAP	3	57898147	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1429406	57898147	140124283	558	173702											
ABHD6	57406	broad.mit.edu	37	chr3	58252959	58252959	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagtccgctatgttcacCatgaagactatcagttctgt	8	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58252959	A	A	58252959	3	1	229	1	0	0	0	0	1	0	0	0	86	594	21	2	169	2	ABHD6	3	58252959	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	354812	58252959	139769471	559	173703											
ACOX2	8309	broad.mit.edu	37	chr3	58503019	58503019	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtcatggagaaagtcaccCgagttagtcaagattccatg	11	9	3	2	rs144682871	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58503019	A	A	58503019	2	1	229	1	0	0	0	0	0	0	0	1	159	639	23	1		1	ACOX2	3	58503019	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	250060	58503019	139519411	560	173704											
ATXN7	6314	broad.mit.edu	37	chr3	63968680	63968680	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccaagaagccctgcaccCggtctttgacatgcaaggta	9	13	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63968680	A	A	63968680	2	1	229	1	0	0	0	0	0	0	0	1	1219	643	23	1		1	ATXN7	3	63968680	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	5465661	63968680	134053750	561	173705											
ADAMTS9	56999	broad.mit.edu	37	chr3	64672373	64672373	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgattcaccccgggcgtcccGaggagggtgacagtgaacag	15	11	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64672373	T	T	64672373	2	4	229	1	0	0	0	0	0	0	0	1	273	1045	37	3		3	ADAMTS9	3	64672373	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	703693	64672373	133350057	562	173706											
MAGI1	9223	broad.mit.edu	37	chr3	65342517	65342517	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggctgccgcgcgctcggCctgcgcgtccctccgtccct	14	20	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65342517	A	A	65342517	3	1	229	1	0	0	0	0	1	0	0	0	9282	739	26	3	467	3	MAGI1	3	65342517	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	670144	65342517	132679913	563	173707											
SLC25A26	115286	broad.mit.edu	37	chr3	66428294	66428294	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagtgcaaaccctcttcCgctgagcagctgtctgaact	9	14	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66428294	A	A	66428294	1	1	229	0	1	0	0	0	0	0	0	0	14603	667	23	1		1	SLC25A26	3	66428294	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	1085777	66428294	131594136	564	173708											
FAM19A4	151647	broad.mit.edu	37	chr3	68934411	68934411	+	5'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaattcccatctgttgCtagaaccaatcatttctgcc	4	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	68934411	G	G	68934411	1	3	229	0	1	0	0	0	0	0	0	0	5581	812	28	4		4	FAM19A4	3	68934411	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	2506117	68934411	129088019	565	173709											
EIF4E3	317649	broad.mit.edu	37	chr3	71733846	71733846	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcaattagtgttttccaCgtccaccttcaaaagcatga	7	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71733846	A	A	71733846	3	1	229	1	0	0	0	0	1	0	0	0	5073	536	19	3	16	3	EIF4E3	3	71733846	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2799435	71733846	126288584	566	173710											
CADM2	253559	broad.mit.edu	37	chr3	85932618	85932618	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaagggactaacaccatGtaatcacaaaaccagaatga	8	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85932618	T	T	85932618	1	4	229	0	1	0	0	0	0	0	0	0	2593	1392	48	3		3	CADM2	3	85932618	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	14198772	85932618	112089812	567	173711											
EPHA6	285220	broad.mit.edu	37	chr3	97439277	97439277	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgctaccgatagttaaaCtgccattttgtgaatgtaaa	8	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97439277	A	A	97439277	1	1	229	0	1	0	0	0	0	0	0	0	5213	580	20	3		3	EPHA6	3	97439277	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11506659	97439277	100583153	568	173712											
IMPG2	50939	broad.mit.edu	37	chr3	100961605	100961605	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtggtacaaaagtcttcCagaatcatgtacaccgcatt	8	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100961605	A	A	100961605	2	1	229	1	0	0	0	0	0	0	0	1	7799	581	21	2		2	IMPG2	3	100961605	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3522328	100961605	97060825	569	173713											
MYH15	22989	broad.mit.edu	37	chr3	108147322	108147322	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagaagaccacgaggatGgcatgggagtatctacctta	12	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108147322	T	T	108147322	1	4	229	0	1	0	0	0	0	0	0	0	10128	1363	47	2		2	MYH15	3	108147322	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	7185717	108147322	89875108	570	173714											
TRAT1	50852	broad.mit.edu	37	chr3	108568141	108568141	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tccacatttgcacatttcaaGagcataagagtagtacatta	6	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108568141	T	T	108568141	1	4	229	0	1	0	0	0	0	0	0	0	16590	957	33	3		3	TRAT1	3	108568141	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	420819	108568141	89454289	571	173715											
GUCA1C	9626	broad.mit.edu	37	chr3	108635059	108635059	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccattgagggcttgtacCgcctgcaaaaagacattaaa	10	9	0	2	rs138320383		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108635059	A	A	108635059	2	1	229	1	0	0	0	0	0	0	0	1	6955	639	23	1		1	GUCA1C	3	108635059	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	66918	108635059	89387371	572	173716											
CD200	4345	broad.mit.edu	37	chr3	112066342	112066342	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	atttccttcatctctctgagGagactgcaggactcagacca	8	12	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112066342	A	A	112066342	1	1	229	0	1	0	0	0	0	0	0	0	3010	1189	41	4		4	CD200	3	112066342	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3431283	112066342	85956088	573	173717											
CD200R1	131450	broad.mit.edu	37	chr3	112648454	112648454	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tacactagaacataactttgTtggtgatcttattccaaaaa	5	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112648454	C	C	112648454	1	2	229	0	1	0	0	0	0	0	0	0	3011	1740	60	5		5	CD200R1	3	112648454	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	582112	112648454	85373976	574	173718											
BOC	91653	broad.mit.edu	37	chr3	113003705	113003705	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaagtcaccagatcacgaGgtaaccaggcctctcccctt	7	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113003705	A	A	113003705	3	1	229	1	0	0	0	0	1	0	0	0	1487	1014	35	4	3025	4	BOC	3	113003705	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	355251	113003705	85018725	575	173719											
ARHGAP31	57514	broad.mit.edu	37	chr3	119134031	119134031	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcgcctggagagcacccCgcaaagttacagctaaagag	10	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119134031	A	A	119134031	2	1	229	1	0	0	0	0	0	0	0	1	882	639	23	1		1	ARHGAP31	3	119134031	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	6130326	119134031	78888399	576	173720											
HGD	3081	broad.mit.edu	37	chr3	120352153	120352153	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtgacctcggatgagtccCatgaactcactcatgcagtt	9	11	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120352153	A	A	120352153	3	1	229	1	0	0	0	0	1	0	0	0	7151	594	21	2	316	2	HGD	3	120352153	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1218122	120352153	77670277	577	173721											
STXBP5L	9515	broad.mit.edu	37	chr3	120976087	120976087	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcctccgtttccagatcTctcagcccagcttccttctt	5	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	120976087	C	C	120976087	3	2	229	1	0	0	0	0	1	0	0	0	15475	1551	54	5	1801	5	STXBP5L	3	120976087	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	623934	120976087	77046343	578	173722											
PDIA5	10954	broad.mit.edu	37	chr3	122865001	122865001	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caacaaggccctggcagaaaGattccacatctcagagtttc	8	12	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122865001	T	T	122865001	3	4	229	1	0	0	0	0	1	0	0	0	11765	942	33	3	1087	3	PDIA5	3	122865001	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1888914	122865001	75157429	579	173723											
ADCY5	111	broad.mit.edu	37	chr3	123044354	123044354	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagatgaggagtccaagcGgagggctcctcacccttccc	14	13	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123044354	C	C	123044354	1	2	229	0	1	0	0	0	0	0	0	0	297	1131	39	4		4	ADCY5	3	123044354	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	179353	123044354	74978076	580	173724											
ADCY5	111	broad.mit.edu	37	chr3	123166468	123166468	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	caccacctggacggccagcaCcacggcgatgagcgcatagc	12	16	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123166468	G	G	123166468	3	3	229	1	0	0	0	0	1	0	0	0	297	507	18	4	2944	4	ADCY5	3	123166468	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	122114	123166468	74855962	581	173725											
MYLK	4638	broad.mit.edu	37	chr3	123419314	123419314	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tgccttggcattcagggtctCggcactgctgctgccattct	11	13	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123419314	A	A	123419314	4	1	229	1	0	0	0	0	0	1	0	0	10150	893	31	3	2811	3	MYLK	3	123419314	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	252846	123419314	74603116	582	173726											
KALRN	8997	broad.mit.edu	37	chr3	124160831	124160831	+	Nonsense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgctgaggtgtttctcAagtacatccacaggaacaac	10	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124160831	T	T	124160831	4	4	229	1	0	0	0	0	0	1	0	0	8045	131	5	5	3306	5	KALRN	3	124160831	Nonsense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	741517	124160831	73861599	583	173727											
MRPL3	11222	broad.mit.edu	37	chr3	131220327	131220327	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	atgattttaaatgtgtccagCcacacagtaattaggaaatg	8	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131220327	G	G	131220327	1	3	229	0	1	0	0	0	0	0	0	0	9887	754	26	4		4	MRPL3	3	131220327	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7059496	131220327	66802103	584	173728											
TOPBP1	11073	broad.mit.edu	37	chr3	133320041	133320041	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	atctatcacagtcacattcaGgctttcaatttttaaaaaca	3	9	5	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133320041	C	C	133320041	1	2	229	0	1	0	0	0	0	0	0	0	16493	1015	35	4		4	TOPBP1	3	133320041	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	2099714	133320041	64702389	585	173729											
TF	7018	broad.mit.edu	37	chr3	133485355	133485355	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttagggaagaggagtgtgGcataaggtgctgtgggctct	17	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	133485355	C	C	133485355	1	2	229	0	1	0	0	0	0	0	0	0	15908	1218	42	4		4	TF	3	133485355	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	165314	133485355	64537075	586	173730											
PCCB	5096	broad.mit.edu	37	chr3	136048788	136048788	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccttcttccacacgtgccCgaatctgctgtgacctggat	8	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136048788	A	A	136048788	2	1	229	1	0	0	0	0	0	0	0	1	11599	644	23	1		1	PCCB	3	136048788	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2563433	136048788	61973642	587	173731											
TMEM22	80723	broad.mit.edu	37	chr3	136573343	136573343	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatatccagttaaaaaacGggtgaaaatacatcccaaca	5	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136573343	T	T	136573343	3	4	229	1	0	0	0	0	1	0	0	0	16266	1116	39	1	43	1	TMEM22	3	136573343	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	524555	136573343	61449087	588	173732											
RBP2	5948	broad.mit.edu	37	chr3	139181127	139181127	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aatcttgcgggtggcaaaatCaatatctgttggcaaaggga	12	6	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139181127	T	T	139181127	3	4	229	1	0	0	0	0	1	0	0	0	13264	826	29	4	337	4	RBP2	3	139181127	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2607784	139181127	58841303	589	173733											
GRK7	131890	broad.mit.edu	37	chr3	141535708	141535708	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgatttctctgaggttcGgggggtggaatttgatgaca	15	4	1	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141535708	T	T	141535708	3	4	229	1	0	0	0	0	1	0	0	0	6860	1116	39	1	1492	1	GRK7	3	141535708	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2354581	141535708	56486722	590	173734											
TRPC1	7220	broad.mit.edu	37	chr3	142499891	142499891	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtatgaggctttctgtaatAtatttaaattattttctcta	6	4	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142499891	T	T	142499891	1	4	229	0	1	0	0	0	0	0	0	0	16703	464	16	5		5	TRPC1	3	142499891	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	964183	142499891	55522539	591	173735											
HPS3	84343	broad.mit.edu	37	chr3	148857880	148857880	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ataaaaggactgaaaactctCgtgtgtgtatccgaatgatt	9	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148857880	A	A	148857880	3	1	229	1	0	0	0	0	1	0	0	0	7407	884	31	3	313	3	HPS3	3	148857880	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6357989	148857880	49164550	592	173736											
SERP1	27230	broad.mit.edu	37	chr3	150263482	150263482	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgatgggagcccccaagCcacttaccagaaccacagac	8	16	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150263482	G	G	150263482	1	3	229	0	1	0	0	0	0	0	0	0	14197	754	26	4		4	SERP1	3	150263482	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1405602	150263482	47758948	593	173737											
CLRN1	7401	broad.mit.edu	37	chr3	150661561	150661561	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggcagagctacgagagCattgtaacacaccctctggg	12	10	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150661561	A	A	150661561	1	1	229	0	1	0	0	0	0	0	0	0	3589	725	25	3		3	CLRN1	3	150661561	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	398079	150661561	47360869	594	173738											
MME	4311	broad.mit.edu	37	chr3	154859751	154859751	+	Intron	DEL	C	-	-													agaagagaaatccacaatttCtgaatgtttcatgcctgctt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	154859751	-	-	154859751	6	5	229	0	1	1	0	1	0	0	0	0	9738	928	32	0		0	MME	3	154859751	Intron	DEL	C	TCGA-91-6836-01A-21D-1855-08	4198190	154859751	43162679	595	173739											
SCHIP1	29970	broad.mit.edu	37	chr3	159439556	159439556	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gacgtctcactgtctttcttCttgttctgctgttcttcccc	6	14	6	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159439556	A	A	159439556	1	1	229	0	1	0	0	0	0	0	0	0	14017	928	32	3		3	SCHIP1	3	159439556	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4579805	159439556	38582874	596	173740											
SERPINI2	5276	broad.mit.edu	37	chr3	167189502	167189502	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatataatgttgtccttatGagataaggaaacctcttgat	7	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	167189502	T	T	167189502	3	4	229	1	0	0	0	0	1	0	0	0	14232	1290	45	3	1128	3	SERPINI2	3	167189502	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	7749946	167189502	30832928	597	173741											
LRRC31	79782	broad.mit.edu	37	chr3	169557830	169557830	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatcttggtcaaagcattcTagttcttcctcctgtgaagc	7	10	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	169557830	C	C	169557830	2	2	229	1	0	0	0	0	0	0	0	1	9073	1509	53	5		5	LRRC31	3	169557830	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	2368328	169557830	28464600	598	173742											
FNDC3B	64778	broad.mit.edu	37	chr3	171965470	171965470	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacattttattcataactcaCacacggcttactacccacct	2	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171965470	T	T	171965470	3	4	229	1	0	0	0	0	1	0	0	0	6028	478	17	4	426	4	FNDC3B	3	171965470	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2407640	171965470	26056960	599	173743											
ATP11B	23200	broad.mit.edu	37	chr3	182605291	182605291	+	Intron	DEL	G	-	-													atttttaaaactttaattttGtttttaatatgcatagttgt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	182605291	-	-	182605291	6	5	229	0	1	1	0	1	0	0	0	0	1124	1392	48	0		0	ATP11B	3	182605291	Intron	DEL	G	TCGA-91-6836-01A-21D-1855-08	10639821	182605291	15417139	600	173744											
HTR3E	285242	broad.mit.edu	37	chr3	183818364	183818364	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgtttaatagaaagccCttccgtccggtcaccaacat	7	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183818364	A	A	183818364	2	1	229	1	0	0	0	0	0	0	0	1	7518	668	24	2		2	HTR3E	3	183818364	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1213073	183818364	14204066	601	173745											
MAP3K13	9175	broad.mit.edu	37	chr3	185155400	185155400	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgaggaagttgaagcaccCtaacatcatcgcattcaagt	8	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	185155400	A	A	185155400	3	1	229	1	0	0	0	0	1	0	0	0	9339	681	24	2	647	2	MAP3K13	3	185155400	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1337036	185155400	12867030	602	173746											
HRG	3273	broad.mit.edu	37	chr3	186389415	186389415	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatcttctttctccagtctCttcagcactggccaatacca	4	15	5	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186389415	T	T	186389415	3	4	229	1	0	0	0	0	1	0	0	0	7421	913	32	4	409	4	HRG	3	186389415	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1234015	186389415	11633015	603	173747											
RFC4	5984	broad.mit.edu	37	chr3	186522425	186522425	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttctctccgctacttccCgcactggcagctactcctcg	7	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186522425	A	A	186522425	2	1	229	1	0	0	0	0	0	0	0	1	13355	639	23	1		1	RFC4	3	186522425	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	133010	186522425	11500005	604	173748											
BCL6	604	broad.mit.edu	37	chr3	187440335	187440335	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggcgccatgcttctggcGcaagtgaagtcgcagctggc	15	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187440335	A	A	187440335	3	1	229	1	0	0	0	0	1	0	0	0	1381	1087	38	4	92	4	BCL6	3	187440335	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	917910	187440335	10582095	605	173749											
TPRG1	285386	broad.mit.edu	37	chr3	188925427	188925427	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tactatataaaaattcacccCaagacatcttaaaatccttc	1	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	188925427	G	G	188925427	1	3	229	0	1	0	0	0	0	0	0	0	16542	609	21	4		4	TPRG1	3	188925427	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1485092	188925427	9097003	606	173750											
ATP13A3	79572	broad.mit.edu	37	chr3	194180178	194180178	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatattcaaaatacaatcCaaacaaaaggaagatactta	5	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	194180178	A	A	194180178	1	1	229	0	1	0	0	0	0	0	0	0	1129	609	21	2		2	ATP13A3	3	194180178	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5254751	194180178	3842252	607	173751											
LRCH3	84859	broad.mit.edu	37	chr3	197579412	197579412	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaccaacttccttttttggGgggttttgggattatacagc	10	7	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	197579412	T	T	197579412	1	4	229	0	1	0	0	0	0	0	0	0	9021	1247	43	2		2	LRCH3	3	197579412	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3399234	197579412	443018	608	173752											
TACC3	10460	broad.mit.edu	37	chr4	1729567	1729567	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	agctccagcgagtctggcccAggtgccctggctgacctgga	14	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1729567	T	T	1729567	2	4	229	1	0	0	0	0	0	0	0	1	15622	175	7	5		5	TACC3	4	1729567	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08		1729567	189424709	609	173753											
POLN	353497	broad.mit.edu	37	chr4	2160923	2160923	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgggtaatggatgaaggtCtcgcagagcatttaactaaa	11	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2160923	A	A	2160923	3	1	229	1	0	0	0	0	1	0	0	0	12302	913	32	3	1184	3	POLN	4	2160923	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	431356	2160923	188993353	610	173754											
GRK4	2868	broad.mit.edu	37	chr4	3040188	3040188	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagacaagaacatacataCcccggtttccagaccaaaca	5	13	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3040188	T	T	3040188	3	4	229	1	0	0	0	0	1	0	0	0	6857	507	18	4	1689	4	GRK4	4	3040188	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	879265	3040188	188114088	611	173755											
LYAR	55646	broad.mit.edu	37	chr4	4283517	4283517	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagagacgttacctgaatcCacgcctgctgtttgatgtcg	11	10	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4283517	T	T	4283517	4	4	229	1	0	0	0	0	0	1	0	0	9191	595	21	4	937	4	LYAR	4	4283517	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1243329	4283517	186870759	612	173756											
EVC	2121	broad.mit.edu	37	chr4	5785367	5785367	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcatgactggcctcccccCggaagagtgtgactacttga	12	12	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5785367	A	A	5785367	3	1	229	1	0	0	0	0	1	0	0	0	5327	652	23	1	1698	1	EVC	4	5785367	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1501850	5785367	185368909	613	173757											
C4orf50	389197	broad.mit.edu	37	chr4	5961051	5961051	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcactctctgaaggttctgcTtcaaatatttatggagtcta	8	8	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5961051	A	A	5961051	1	1	229	0	1	0	0	0	0	0	0	0	2299	1624	56	5		5	C4orf50	4	5961051	3'UTR	SNP	T	TCGA-91-6836-01A-21D-1855-08	175684	5961051	185193225	614	173758											
DRD5	1816	broad.mit.edu	37	chr4	9785072	9785072	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaataacacctttcaccccGaatggattccattaaactgc	4	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9785072	A	A	9785072	2	1	229	1	0	0	0	0	0	0	0	1	4800	1045	37	4		4	DRD5	4	9785072	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3824021	9785072	181369204	615	173759											
SLC2A9	56606	broad.mit.edu	37	chr4	10027616	10027616	+	5'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	acttttcaggttttgaacttTtgttgttattgtttctgaga	8	4	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10027616	C	C	10027616	1	2	229	0	1	0	0	0	0	0	0	0	14666	1856	64	5		5	SLC2A9	4	10027616	5'UTR	SNP	T	TCGA-91-6836-01A-21D-1855-08	242544	10027616	181126660	616	173760											
ZNF518B	85460	broad.mit.edu	37	chr4	10446934	10446934	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgggctaaacagtttgcaGggacaactagttctgctggt	12	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10446934	T	T	10446934	3	4	229	1	0	0	0	0	1	0	0	0	18090	1000	35	2	2209	2	ZNF518B	4	10446934	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	419318	10446934	180707342	617	173761											
ZNF518B	85460	broad.mit.edu	37	chr4	10447805	10447805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatcatggcagcctctgCctctgagccttgatacaaaa	9	12	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10447805	A	A	10447805	3	1	229	1	0	0	0	0	1	0	0	0	18090	739	26	3	3080	3	ZNF518B	4	10447805	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	871	10447805	180706471	618	173762											
CLNK	116449	broad.mit.edu	37	chr4	10542275	10542275	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaagtttgctgcagcaGtgatgcctcaggccctgaat	12	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10542275	T	T	10542275	1	4	229	0	1	0	0	0	0	0	0	0	3579	1044	36	3		3	CLNK	4	10542275	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	94470	10542275	180612001	619	173763											
BOD1L	259282	broad.mit.edu	37	chr4	13571655	13571655	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttatcgcttcgcttttttcaCaggggcttcctccacccttt	6	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13571655	A	A	13571655	3	1	229	1	0	0	0	0	1	0	0	0	1489	478	17	3	23	3	BOD1L	4	13571655	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3029380	13571655	177582621	620	173764											
SLIT2	9353	broad.mit.edu	37	chr4	20487973	20487973	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	agcatgttcagtaagcaaagGacaggaccactggtttacaa	10	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20487973	T	T	20487973	1	4	229	0	1	0	0	0	0	0	0	0	14854	1189	41	3		3	SLIT2	4	20487973	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	6916318	20487973	170666303	621	173765											
SLIT2	9353	broad.mit.edu	37	chr4	20569279	20569279	+	Intron	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	catctgtgtctgaagtattgGagcaaagataactaagccaa	9	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20569279	A	A	20569279	1	1	229	0	1	0	0	0	0	0	0	0	14854	1189	41	4		4	SLIT2	4	20569279	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	81306	20569279	170584997	622	173766											
DHX15	1665	broad.mit.edu	37	chr4	24585975	24585975	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgcacgcttcttgccagaGgggtaatcctcccctaggtc	10	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24585975	C	C	24585975	2	2	229	1	0	0	0	0	0	0	0	1	4541	987	35	4		4	DHX15	4	24585975	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	4016696	24585975	166568301	623	173767											
LGI2	55203	broad.mit.edu	37	chr4	25005381	25005381	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgttccacctcatgacccGggagtccccgatgaagcggg	12	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25005381	T	T	25005381	2	4	229	1	0	0	0	0	0	0	0	1	8824	1115	39	1		1	LGI2	4	25005381	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	419406	25005381	166148895	624	173768											
STIM2	57620	broad.mit.edu	37	chr4	26949174	26949174	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggacttggaggagggggCtgaggccacagccgcatctt	18	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26949174	T	T	26949174	1	4	229	0	1	0	0	0	0	0	0	0	15402	812	28	4		4	STIM2	4	26949174	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1943793	26949174	164205102	625	173769											
STIM2	57620	broad.mit.edu	37	chr4	27010602	27010602	+	Silent	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gacttagatgaagacacaccCccaatagtgtcacaatttcc	6	12	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27010602	G	G	27010602	2	3	229	1	0	0	0	0	0	0	0	1	15402	610	22	4		4	STIM2	4	27010602	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	61428	27010602	164143674	626	173770											
KLF3	51274	broad.mit.edu	37	chr4	38691482	38691482	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgaactcagtgtccccccCgcaagcattgttgcaagagt	9	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38691482	A	A	38691482	3	1	229	1	0	0	0	0	1	0	0	0	8418	652	23	1	687	1	KLF3	4	38691482	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	11680880	38691482	152462794	627	173771											
KLHL5	51088	broad.mit.edu	37	chr4	39064576	39064576	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttacagcagaagattgtggcGgtgcacattggctggataga	14	6	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	39064576	C	C	39064576	3	2	229	1	0	0	0	0	1	0	0	0	8463	1116	39	4	444	4	KLHL5	4	39064576	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	373094	39064576	152089700	628	173772											
CHRNA9	55584	broad.mit.edu	37	chr4	40356179	40356179	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgaaagctgcctcagccCgcaccacagtagagagcggg	15	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40356179	A	A	40356179	3	1	229	1	0	0	0	0	1	0	0	0	3420	652	23	1	1100	1	CHRNA9	4	40356179	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1291603	40356179	150798097	629	173773											
LIMCH1	22998	broad.mit.edu	37	chr4	41689960	41689960	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agaggtcagcaggcctttctGaggctgctttgttatgacta	12	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41689960	T	T	41689960	1	4	229	0	1	0	0	0	0	0	0	0	8869	1305	45	3		3	LIMCH1	4	41689960	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1333781	41689960	149464316	630	173774											
DCAF4L1	285429	broad.mit.edu	37	chr4	41984357	41984357	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgcagtttccagatccCagaggcctggtcctgtgcgt	12	13	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41984357	A	A	41984357	3	1	229	1	0	0	0	0	1	0	0	0	4304	594	21	2	550	2	DCAF4L1	4	41984357	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	294397	41984357	149169919	631	173775											
CORIN	10699	broad.mit.edu	37	chr4	47746498	47746498	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggtttctaaactgggaGcatctgaggaaatccggcca	12	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47746498	T	T	47746498	4	4	229	1	0	0	0	0	0	1	0	0	3784	963	34	3	2480	3	CORIN	4	47746498	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5762141	47746498	143407778	632	173776											
KIAA1211	57482	broad.mit.edu	37	chr4	57193876	57193876	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccaagaggttttccacccCggatgctgcccccgtgtcaa	9	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57193876	A	A	57193876	3	1	229	1	0	0	0	0	1	0	0	0	8285	652	23	1	3638	1	KIAA1211	4	57193876	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	9447378	57193876	133960400	633	173777											
ARL9	132946	broad.mit.edu	37	chr4	57377510	57377510	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	acagccagatggagttcctgGagagtaagctctctgttcct	11	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57377510	T	T	57377510	4	4	229	1	0	0	0	0	0	1	0	0	952	1175	41	3	15	3	ARL9	4	57377510	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	183634	57377510	133776766	634	173778											
REST	5978	broad.mit.edu	37	chr4	57797280	57797280	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatagagctgtctcctccCatggaggtggtccagaagga	13	10	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57797280	A	A	57797280	2	1	229	1	0	0	0	0	0	0	0	1	13342	581	21	2		2	REST	4	57797280	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	419770	57797280	133356996	635	173779											
EPHA5	2044	broad.mit.edu	37	chr4	66270034	66270034	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcaacagccaaatggtcaGatcaaggtgaggaagagatc	12	8	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66270034	T	T	66270034	1	4	229	0	1	0	0	0	0	0	0	0	5212	957	33	3		3	EPHA5	4	66270034	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	8472754	66270034	124884242	636	173780											
EPHA5	2044	broad.mit.edu	37	chr4	66361003	66361003	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	gagatgattaaacattatgtCtgttttagggggaaatgtta	11	2	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	66361003	T	T	66361003	1	4	229	0	1	0	0	0	0	0	0	0	5212	928	32	4		4	EPHA5	4	66361003	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	90969	66361003	124793273	637	173781											
STAP1	26228	broad.mit.edu	37	chr4	68449236	68449236	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtagtatttttttcaaGtaatgatcttcatcagttaa	6	4	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68449236	T	T	68449236	1	4	229	0	1	0	0	0	0	0	0	0	15370	1044	36	3		3	STAP1	4	68449236	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2088233	68449236	122705040	638	173782											
STAP1	26228	broad.mit.edu	37	chr4	68449247	68449247	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttttttcaagtaatgatcttCatcagttaaaaaaacaattc	3	6	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68449247	A	A	68449247	1	1	229	0	1	0	0	0	0	0	0	0	15370	841	29	3		3	STAP1	4	68449247	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11	68449247	122705029	639	173783											
TMPRSS11F	389208	broad.mit.edu	37	chr4	68919688	68919688	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactctggtgtagactccaGgttttttgggaagtgcacat	11	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68919688	A	A	68919688	3	1	229	1	0	0	0	0	1	0	0	0	16366	1000	35	4	64	4	TMPRSS11F	4	68919688	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	470441	68919688	122234588	640	173784											
HTN3	3347	broad.mit.edu	37	chr4	70897652	70897652	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacacatattcttgaattatGaaattaagatattaattatt	3	3	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70897652	T	T	70897652	1	4	229	0	1	0	0	0	0	0	0	0	7505	1305	45	3		3	HTN3	4	70897652	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1977964	70897652	120256624	641	173785											
CXCL6	6372	broad.mit.edu	37	chr4	74703004	74703004	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccagaaaattttggacagGtatttgtccctttgatcttt	7	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74703004	T	T	74703004	5	4	229	1	0	0	0	0	0	0	1	0	4121	1275	44	3	337	3	CXCL6	4	74703004	Splice_Site	SNP	G	TCGA-91-6836-01A-21D-1855-08	3805352	74703004	116451272	642	173786											
PPEF2	5470	broad.mit.edu	37	chr4	76793140	76793141	+	Intron	INS	-	T	T													agattctatgaacactataaINStttttttttctgaaaatcac							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76793141	T	T	76793140	6	5	229	0	1	1	1	0	0	0	0	0	12404	116	4	0		0	PPEF2	4	76793140	Intron	INS	-	TCGA-91-6836-01A-21D-1855-08	2090136	76793140	114361136	643	173787											
CCNG2	901	broad.mit.edu	37	chr4	78079902	78079902	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccccgcccccgttgaatcAtgactaaagcctgcaaaatt	6	16	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78079902	G	G	78079902	1	3	229	0	1	0	0	0	0	0	0	0	2954	232	8	5		5	CCNG2	4	78079902	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1286762	78079902	113074374	644	173788											
FRAS1	80144	broad.mit.edu	37	chr4	79398895	79398895	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacttggatgctcttttcCtatgatgccctggggaagca	12	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79398895	T	T	79398895	1	4	229	0	1	0	0	0	0	0	0	0	6102	696	24	4		4	FRAS1	4	79398895	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1318993	79398895	111755381	645	173789											
PAQR3	152559	broad.mit.edu	37	chr4	79847797	79847806	+	Frame_Shift_Del	DEL	AATTGGGATG	-	-													ttgccattgctgcgtgaggtAattgggatgaatctgcgcaa							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	79847806	-	-	79847797	7	5	229	1	0	1	0	1	0	0	0	0	11530	362	13	0	367	0	PAQR3	4	79847797	Frame_Shift_Del	DEL	AATTGGGATG	TCGA-91-6836-01A-21D-1855-08	448902	79847797	111306479	646	173790											
LIN54	132660	broad.mit.edu	37	chr4	83860646	83860646	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcactagacatcttggacCccattatcacttttgcaata	5	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83860646	T	T	83860646	1	4	229	0	1	0	0	0	0	0	0	0	8882	638	22	4		4	LIN54	4	83860646	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4012849	83860646	107293630	647	173791											
AGPAT9	84803	broad.mit.edu	37	chr4	84515957	84515957	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaactttctttgcacaacGgtgccttttacgttttttcc	5	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84515957	T	T	84515957	1	4	229	0	1	0	0	0	0	0	0	0	392	1131	39	1		1	AGPAT9	4	84515957	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	655311	84515957	106638319	648	173792											
WDFY3	23001	broad.mit.edu	37	chr4	85748105	85748105	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagatctttcaaggcatctTtggattctgcctcttttgct	7	11	5	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	85748105	C	C	85748105	3	2	229	1	0	0	0	0	1	0	0	0	17397	1841	64	5	9873	5	WDFY3	4	85748105	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	1232148	85748105	105406171	649	173793											
MAPK10	5602	broad.mit.edu	37	chr4	87080528	87080528	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgtgaaggttgagtctccCacttccacactgtagaactg	9	11	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87080528	A	A	87080528	2	1	229	1	0	0	0	0	0	0	0	1	9364	581	21	2		2	MAPK10	4	87080528	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1332423	87080528	104073748	650	173794											
ABCG2	9429	broad.mit.edu	37	chr4	89034589	89034589	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcttcttcttctcaccccCggaaagttgatgtaattcag	6	12	5	1	rs138606116	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89034589	A	A	89034589	3	1	229	1	0	0	0	0	1	0	0	0	69	652	23	1	939	1	ABCG2	4	89034589	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1954061	89034589	102119687	651	173795											
HERC5	51191	broad.mit.edu	37	chr4	89385027	89385027	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggctgctgtttactttcGgtgctggaaaacatgggcaa	13	7	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89385027	T	T	89385027	3	4	229	1	0	0	0	0	1	0	0	0	7128	1116	39	1	824	1	HERC5	4	89385027	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	350438	89385027	101769249	652	173796											
SNCA	6622	broad.mit.edu	37	chr4	90756767	90756767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttggttttctcagcagCagccacaactccctccttgg	8	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90756767	A	A	90756767	3	1	229	1	0	0	0	0	1	0	0	0	14954	710	25	3	390	3	SNCA	4	90756767	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1371740	90756767	100397509	653	173797											
MMRN1	22915	broad.mit.edu	37	chr4	90816474	90816474	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttacagaatcttaccctcCcaaccaacgctagcatcaag	5	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90816474	A	A	90816474	3	1	229	1	0	0	0	0	1	0	0	0	9764	623	22	2	354	2	MMRN1	4	90816474	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	59707	90816474	100337802	654	173798											
PDHA2	5161	broad.mit.edu	37	chr4	96762101	96762102	+	Missense_Mutation	DNP	CA	AG	AG													tcgtgaggcaacaaaatttgCagctaactactgtagatctg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AG	96762102	AG	AG	96762101	3	1	229	1	0	0	0	0	1	0	0	0	11759	710	25	3	802	3	PDHA2	4	96762101	Missense_Mutation	DNP	CA	TCGA-91-6836-01A-21D-1855-08	5945627	96762101	94392175	655	173799											
EMCN	51705	broad.mit.edu	37	chr4	101439078	101439078	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagcagttccatggtgccCgtagatggtgtcaatatctt	11	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101439078	A	A	101439078	1	1	229	0	1	0	0	0	0	0	0	0	5128	667	23	1		1	EMCN	4	101439078	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	4676977	101439078	89715198	656	173800											
SEC24B	10427	broad.mit.edu	37	chr4	110452555	110452555	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagaaagcatttagaacGggtacaagcacacggctgga	12	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	110452555	T	T	110452555	2	4	229	1	0	0	0	0	0	0	0	1	14108	1103	39	1		1	SEC24B	4	110452555	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	9013477	110452555	80701721	657	173801											
ENPEP	2028	broad.mit.edu	37	chr4	111482456	111482456	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcaacgttgtgcagtgatActgaatttctaggtaagaag	11	6	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111482456	T	T	111482456	1	4	229	0	1	0	0	0	0	0	0	0	5170	406	14	5		5	ENPEP	4	111482456	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1029901	111482456	79671820	658	173802											
PITX2	5308	broad.mit.edu	37	chr4	111553980	111553980	+	Intron	DEL	C	-	-													gatttggttctgatttccttCctgcccaggctggcccctcg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	111553980	-	-	111553980	6	5	229	0	1	1	0	1	0	0	0	0	12050	870	30	0		0	PITX2	4	111553980	Intron	DEL	C	TCGA-91-6836-01A-21D-1855-08	71524	111553980	79600296	659	173803											
ANK2	287	broad.mit.edu	37	chr4	114279596	114279596	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gataggggtgatgattctccCgattcttccccagaagaaca	10	10	2	4	rs144939151		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114279596	A	A	114279596	2	1	229	1	0	0	0	0	0	0	0	1	621	639	23	1		1	ANK2	4	114279596	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2725616	114279596	76874680	660	173804											
NDST4	64579	broad.mit.edu	37	chr4	115891729	115891729	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtcatctccttcatcttCctcttcagtccctttaaaac	3	14	6	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	115891729	A	A	115891729	4	1	229	1	0	0	0	0	0	1	0	0	10353	864	30	3	1584	3	NDST4	4	115891729	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1612133	115891729	75262547	661	173805											
KIAA1109	84162	broad.mit.edu	37	chr4	123091739	123091739	+	5'Flank	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgcaattttataaatctctGattctaaatttaacctttga	3	6	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123091739	A	A	123091739	1	1	229	0	1	0	0	0	0	0	0	0	8278	1305	45	4		4	KIAA1109	4	123091739	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	7200010	123091739	68062537	662	173806											
KIAA1109	84162	broad.mit.edu	37	chr4	123161126	123161126	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcagattgactacagtaGgggttccatatatcacagtg	10	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123161126	T	T	123161126	3	4	229	1	0	0	0	0	1	0	0	0	8278	1000	35	2	4395	2	KIAA1109	4	123161126	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	69387	123161126	67993150	663	173807											
BBS12	166379	broad.mit.edu	37	chr4	123664927	123664927	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcatctgcaaaatgccaCagactctggctctccttcat	5	14	5	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123664927	T	T	123664927	3	4	229	1	0	0	0	0	1	0	0	0	1342	478	17	4	1882	4	BBS12	4	123664927	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	503801	123664927	67489349	664	173808											
FAT4	79633	broad.mit.edu	37	chr4	126402914	126402914	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgagataaaagctaatggtGacttcatttgattagaccgc	10	6	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126402914	T	T	126402914	1	4	229	0	1	0	0	0	0	0	0	0	5749	1305	45	3		3	FAT4	4	126402914	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2737987	126402914	64751362	665	173809											
FAT4	79633	broad.mit.edu	37	chr4	126411157	126411157	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcaaaaacagatccctcaGtgaagattggctgccgtggc	10	11	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	126411157	A	A	126411157	3	1	229	1	0	0	0	0	1	0	0	0	5749	1029	36	4	13246	4	FAT4	4	126411157	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	8243	126411157	64743119	666	173810											
PLK4	10733	broad.mit.edu	37	chr4	128808591	128808591	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaactccttttccatttGcagacccgacacctcagact	5	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128808591	T	T	128808591	3	4	229	1	0	0	0	0	1	0	0	0	12193	1319	46	3	1421	3	PLK4	4	128808591	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2397434	128808591	62345685	667	173811											
PHF17	79960	broad.mit.edu	37	chr4	129789081	129789081	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgcaaagtccaggaacAgatattcaatctttacacta	7	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	129789081	G	G	129789081	3	3	229	1	0	0	0	0	1	0	0	0	11923	188	7	5	1635	5	PHF17	4	129789081	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	980490	129789081	61365195	668	173812											
PCDH18	54510	broad.mit.edu	37	chr4	138451367	138451367	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	atcaattatgaagatattctCctcattacctgctactatgg	5	9	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138451367	A	A	138451367	4	1	229	1	0	0	0	0	0	1	0	0	11607	864	30	3	1547	3	PCDH18	4	138451367	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	8662286	138451367	52702909	669	173813											
SMAD1	4086	broad.mit.edu	37	chr4	146479012	146479012	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattgagatacatctgcacGgccccctccagtggctggat	12	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146479012	T	T	146479012	3	4	229	1	0	0	0	0	1	0	0	0	14871	1116	39	1	1346	1	SMAD1	4	146479012	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	8027645	146479012	44675264	670	173814											
ARHGAP10	79658	broad.mit.edu	37	chr4	148800576	148800576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatggtttatattttaatgGtttatattcatggatggtaa	8	1	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148800576	T	T	148800576	1	4	229	0	1	0	0	0	0	0	0	0	864	1276	44	3		3	ARHGAP10	4	148800576	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2321564	148800576	42353700	671	173815											
SH3D19	152503	broad.mit.edu	37	chr4	152096011	152096011	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgatgcccctgcgagtcGgggaggaacagtgacaggtt	16	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152096011	T	T	152096011	2	4	229	1	0	0	0	0	0	0	0	1	14362	1124	39	1		1	SH3D19	4	152096011	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3295435	152096011	39058265	672	173816											
SFRP2	6423	broad.mit.edu	37	chr4	154702667	154702667	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgccccttctgccacCgcttcaccgaggtgatcacc	7	19	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	154702667	A	A	154702667	3	1	229	1	0	0	0	0	1	0	0	0	14275	652	23	1	67	1	SFRP2	4	154702667	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2606656	154702667	36451609	673	173817											
DCHS2	54798	broad.mit.edu	37	chr4	155250709	155250709	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttccagggagacactggGggaagaagggcctgttatca	14	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155250709	T	T	155250709	3	4	229	1	0	0	0	0	1	0	0	0	4321	1232	43	2	6387	2	DCHS2	4	155250709	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	548042	155250709	35903567	674	173818											
FGG	2266	broad.mit.edu	37	chr4	155526028	155526028	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagtcatattctgtttcCgcagggtgctctggtctgac	12	9	4	2	rs148378804		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	155526028	A	A	155526028	2	1	229	1	0	0	0	0	0	0	0	1	5927	639	23	1		1	FGG	4	155526028	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	275319	155526028	35628248	675	173819											
LRAT	9227	broad.mit.edu	37	chr4	155670222	155670222	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcgtctatagtctgtacGggcttggtatcatacactac	10	9	3	0	rs146717374	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155670222	T	T	155670222	2	4	229	1	0	0	0	0	0	0	0	1	9017	1103	39	1		1	LRAT	4	155670222	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	144194	155670222	35484054	676	173820											
FSTL5	56884	broad.mit.edu	37	chr4	162459318	162459318	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggtggttctatacatacGggtctttctagcagagtctt	11	7	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	162459318	T	T	162459318	3	4	229	1	0	0	0	0	1	0	0	0	6140	1130	39	1	1259	1	FSTL5	4	162459318	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	6789096	162459318	28694958	677	173821											
C4orf43	55319	broad.mit.edu	37	chr4	164435125	164435125	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaacattgacataaattttGgttctgttttaaacacgtta	5	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164435125	T	T	164435125	1	4	229	0	1	0	0	0	0	0	0	0	2294	1363	47	2		2	C4orf43	4	164435125	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1975807	164435125	26719151	678	173822											
MARCH1	55016	broad.mit.edu	37	chr4	164506983	164506983	+	Nonsense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtatctgagctctttatcCactggtggaggcaggactgg	14	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	164506983	T	T	164506983	4	4	229	1	0	0	0	0	0	1	0	0	9390	595	21	4	540	4	MARCH1	4	164506983	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	71858	164506983	26647293	679	173823											
CPE	1363	broad.mit.edu	37	chr4	166405652	166405652	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatactcttctttcaaccCggccatgtctgaccccaatc	6	16	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	166405652	A	A	166405652	3	1	229	1	0	0	0	0	1	0	0	0	3831	652	23	1	887	1	CPE	4	166405652	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1898669	166405652	24748624	680	173824											
DCTD	1635	broad.mit.edu	37	chr4	183836721	183836721	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaggaaacttcactcaTgttgggtctagaagaaaaac	9	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	183836721	A	A	183836721	3	1	229	1	0	0	0	0	1	0	0	0	4338	1464	51	5	555	5	DCTD	4	183836721	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	17431069	183836721	7317555	681	173825											
ACSL1	2180	broad.mit.edu	37	chr4	185709868	185709868	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcaagtagtgcggatctTcgtgcaccaccactacccta	8	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	185709868	C	C	185709868	2	2	229	1	0	0	0	0	0	0	0	1	177	1770	62	5		5	ACSL1	4	185709868	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	1873147	185709868	5444408	682	173826											
PDLIM3	27295	broad.mit.edu	37	chr4	186423617	186423617	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggtgccggtacttatccCgcgccttcaccacagcaccg	10	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	186423617	A	A	186423617	3	1	229	1	0	0	0	0	1	0	0	0	11775	652	23	1	172	1	PDLIM3	4	186423617	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	713749	186423617	4730659	683	173827											
PDLIM3	27295	broad.mit.edu	37	chr4	186435436	186435436	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatgacctgcttcggcccGggatcacgaaaggtttgggc	13	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	186435436	T	T	186435436	3	4	229	1	0	0	0	0	1	0	0	0	11775	1116	39	1	728	1	PDLIM3	4	186435436	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	11819	186435436	4718840	684	173828											
FAT1	2195	broad.mit.edu	37	chr4	187516905	187516905	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacttcagacaggctttccCgggcactgtatggctgggaa	13	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187516905	A	A	187516905	3	1	229	1	0	0	0	0	1	0	0	0	5746	652	23	1	698	1	FAT1	4	187516905	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1081469	187516905	3637371	685	173829											
FAT1	2195	broad.mit.edu	37	chr4	187518025	187518025	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgcaagaaagccgtagcGggtcccaggtgcttgtcttt	12	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	187518025	T	T	187518025	2	4	229	1	0	0	0	0	0	0	0	1	5746	1103	39	1		1	FAT1	4	187518025	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1120	187518025	3636251	686	173830											
FAT1	2195	broad.mit.edu	37	chr4	187541782	187541782	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaattctctttcactacCgcagagtagacatcctgggt	10	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	187541782	A	A	187541782	2	1	229	1	0	0	0	0	0	0	0	1	5746	639	23	1		1	FAT1	4	187541782	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	23757	187541782	3612494	687	173831											
TRIML1	339976	broad.mit.edu	37	chr4	189065159	189065159	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaggtcacgcggtctgtgCcgaggagtgaacctctctgc	14	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	189065159	G	G	189065159	1	3	229	0	1	0	0	0	0	0	0	0	16675	754	26	4		4	TRIML1	4	189065159	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1523377	189065159	2089117	688	173832											
TUBB4Q	56604	broad.mit.edu	37	chr4	190904008	190904008	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgaacatctgttcatccacCtccctcatgggcatgcgacc	7	15	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	190904008	A	A	190904008	3	1	229	1	0	0	0	0	1	0	0	0	16885	680	24	2	332	2	TUBB4Q	4	190904008	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1838849	190904008	250268	689	173833											
SLC6A19	340024	broad.mit.edu	37	chr5	1217012	1217012	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctccgaccccgcggcctaCgcgcagctggtgttccagac	12	18	0	1	rs145782869		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1217012	T	T	1217012	2	4	229	1	0	0	0	0	0	0	0	1	14796	547	19	4		4	SLC6A19	5	1217012	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08		1217012	179698248	690	173834											
SLC6A19	340024	broad.mit.edu	37	chr5	1218978	1218978	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggagacggagcccacGgagggcagaggccctggtga	21	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1218978	T	T	1218978	1	4	229	0	1	0	0	0	0	0	0	0	14796	1131	39	1		1	SLC6A19	5	1218978	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1966	1218978	179696282	691	173835											
TERT	7015	broad.mit.edu	37	chr5	1264660	1264660	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagttcaccactgtcttcCgcaagttcaccacgcagcca	8	15	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1264660	A	A	1264660	3	1	229	1	0	0	0	0	1	0	0	0	15886	652	23	1	720	1	TERT	5	1264660	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	45682	1264660	179650600	692	173836											
SLC6A3	6531	broad.mit.edu	37	chr5	1442965	1442965	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttccgtacgtgccttggcCccggctgcccctacgacccc	10	19	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1442965	A	A	1442965	1	1	229	0	1	0	0	0	0	0	0	0	14799	638	22	2		2	SLC6A3	5	1442965	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	178305	1442965	179472295	693	173837											
LPCAT1	79888	broad.mit.edu	37	chr5	1489938	1489938	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagaatcctggtctgaccGggacacgaacacaggccgta	13	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1489938	T	T	1489938	2	4	229	1	0	0	0	0	0	0	0	1	8997	1115	39	1		1	LPCAT1	5	1489938	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	46973	1489938	179425322	694	173838											
ADAMTS16	170690	broad.mit.edu	37	chr5	5239830	5239830	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caccattccttctggagcccGgagtatccgcatctatgaaa	8	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5239830	A	A	5239830	3	1	229	1	0	0	0	0	1	0	0	0	261	1116	39	4	2377	4	ADAMTS16	5	5239830	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3749892	5239830	175675430	695	173839											
NSUN2	54888	broad.mit.edu	37	chr5	6611873	6611873	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggcatccacttcagccCtggcagttcattagacacat	7	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6611873	A	A	6611873	3	1	229	1	0	0	0	0	1	0	0	0	10773	681	24	2	1283	2	NSUN2	5	6611873	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1372043	6611873	174303387	696	173840											
DNAH5	1767	broad.mit.edu	37	chr5	13736032	13736032	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtagaggatgctgcccCgcgtagccactggaagacaa	14	10	0	2	rs140380565		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13736032	A	A	13736032	3	1	229	1	0	0	0	0	1	0	0	0	4644	652	23	1	2461	1	DNAH5	5	13736032	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	7124159	13736032	167179228	697	173841											
DNAH5	1767	broad.mit.edu	37	chr5	13919219	13919219	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttcctaatcactctatGccttgaaaatatgcatagag	6	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13919219	T	T	13919219	1	4	229	0	1	0	0	0	0	0	0	0	4644	1334	46	3		3	DNAH5	5	13919219	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	183187	13919219	166996041	698	173842											
ANKH	56172	broad.mit.edu	37	chr5	14798087	14798087	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcactggaaggagtctttgtTgtgatgatacaagggttctg	13	5	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14798087	A	A	14798087	1	1	229	0	1	0	0	0	0	0	0	0	627	1827	63	5		5	ANKH	5	14798087	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	878868	14798087	166117173	699	173843											
CDH18	1016	broad.mit.edu	37	chr5	19747253	19747253	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgttgagtggatatcaccCgtggtatcgtcaatgataaa	10	6	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19747253	A	A	19747253	2	1	229	1	0	0	0	0	0	0	0	1	3133	639	23	1		1	CDH18	5	19747253	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	4949166	19747253	161168007	700	173844											
CDH12	1010	broad.mit.edu	37	chr5	21882756	21882756	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtccagggtactggctcctCatctcactcgagcttatgcc	9	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21882756	A	A	21882756	1	1	229	0	1	0	0	0	0	0	0	0	3128	841	29	3		3	CDH12	5	21882756	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2135503	21882756	159032504	701	173845											
PRDM9	56979	broad.mit.edu	37	chr5	23526203	23526203	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaaatggactgtaaagGtccatccagcacttggtggg	13	7	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	23526203	C	C	23526203	1	2	229	0	1	0	0	0	0	0	0	0	12569	1276	44	4		4	PRDM9	5	23526203	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1643447	23526203	157389057	702	173846											
CDH10	1008	broad.mit.edu	37	chr5	24535754	24535754	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattctcccatggtctttcTactgataaaggtcataaaga	6	8	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	24535754	C	C	24535754	1	2	229	0	1	0	0	0	0	0	0	0	3126	1537	53	5		5	CDH10	5	24535754	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1009551	24535754	156379506	703	173847											
CDH9	1007	broad.mit.edu	37	chr5	26881336	26881336	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtaatcataatcttggttaCaatcagctgtgagagattcc	9	7	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26881336	A	A	26881336	3	1	229	1	0	0	0	0	1	0	0	0	3147	478	17	3	94	3	CDH9	5	26881336	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2345582	26881336	154033924	704	173848											
CDH6	1004	broad.mit.edu	37	chr5	31316245	31316245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagaatgaaggagttgagCggatgttgtctaaagggaat	15	2	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31316245	A	A	31316245	1	1	229	0	1	0	0	0	0	0	0	0	3144	783	27	3		3	CDH6	5	31316245	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4434909	31316245	149599015	705	173849											
PDZD2	23037	broad.mit.edu	37	chr5	32052744	32052744	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acattgtgaagaagtctaccCgctccttaagcacgactcag	8	12	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32052744	A	A	32052744	3	1	229	1	0	0	0	0	1	0	0	0	11795	652	23	1	1723	1	PDZD2	5	32052744	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	736499	32052744	148862516	706	173850											
MTMR12	54545	broad.mit.edu	37	chr5	32230269	32230269	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaaccatggtagtcagtgGacttgctatgccagctgtca	10	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32230269	A	A	32230269	3	1	229	1	0	0	0	0	1	0	0	0	10035	1174	41	4	388	4	MTMR12	5	32230269	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	177525	32230269	148684991	707	173851											
ZFR	51663	broad.mit.edu	37	chr5	32397267	32397267	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttacataaagaatgctctGggtgtttttgtttttgtttt	8	3	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32397267	T	T	32397267	1	4	229	0	1	0	0	0	0	0	0	0	17785	1363	47	2		2	ZFR	5	32397267	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	166998	32397267	148517993	708	173852											
ADAMTS12	81792	broad.mit.edu	37	chr5	33630891	33630891	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatacccaataccttacaTatgccattaatacagacatt	2	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33630891	A	A	33630891	2	1	229	1	0	0	0	0	0	0	0	1	257	1396	49	5		5	ADAMTS12	5	33630891	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	1233624	33630891	147284369	709	173853											
SLC45A2	51151	broad.mit.edu	37	chr5	33947310	33947310	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tactcagtaatgaggttaaaGggcacagtgtacagggtgct	13	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33947310	T	T	33947310	2	4	229	1	0	0	0	0	0	0	0	1	14755	987	35	2		2	SLC45A2	5	33947310	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	316419	33947310	146967950	710	173854											
SLC45A2	51151	broad.mit.edu	37	chr5	33951835	33951835	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcaatgtagtaagaaccCttctcatgcactctgcttct	6	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33951835	A	A	33951835	1	1	229	0	1	0	0	0	0	0	0	0	14755	696	24	2		2	SLC45A2	5	33951835	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4525	33951835	146963425	711	173855											
SLC45A2	51151	broad.mit.edu	37	chr5	33984276	33984276	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acactaagacacatatccctGtctgcccaccttgtgcagcc	6	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33984276	A	A	33984276	1	1	229	0	1	0	0	0	0	0	0	0	14755	1392	48	4		4	SLC45A2	5	33984276	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	32441	33984276	146930984	712	173856											
RAD1	5810	broad.mit.edu	37	chr5	34909163	34909163	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gaataaaatcaagtacttatCcaatttgctaatattttctg	4	6	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	34909163	G	G	34909163	1	3	229	0	1	0	0	0	0	0	0	0	13086	870	30	4		4	RAD1	5	34909163	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	924887	34909163	146006097	713	173857											
SPEF2	79925	broad.mit.edu	37	chr5	35692520	35692520	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagactccgtctcaaacaaaAcaaaccaaacaaaacaaaaa	3	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35692520	G	G	35692520	1	3	229	0	1	0	0	0	0	0	0	0	15153	58	2	5		5	SPEF2	5	35692520	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	783357	35692520	145222740	714	173858											
UGT3A1	133688	broad.mit.edu	37	chr5	35955884	35955884	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccattgactggtaatccCaccatgggcacaccatgacg	8	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35955884	A	A	35955884	2	1	229	1	0	0	0	0	0	0	0	1	17089	581	21	2		2	UGT3A1	5	35955884	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	263364	35955884	144959376	715	173859											
UGT3A2	167127	broad.mit.edu	37	chr5	36038148	36038149	+	Intron	DNP	CT	AA	AA													ataagaaagagggtgggacaCttcaggatgaaaatttcaaa							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	36038149	AA	AA	36038148	1	1	229	0	1	0	0	0	0	0	0	0	17090	580	20	3		3	UGT3A2	5	36038148	Intron	DNP	CT	TCGA-91-6836-01A-21D-1855-08	82264	36038148	144877112	716	173860											
RANBP3L	202151	broad.mit.edu	37	chr5	36264927	36264927	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	aactttgaaaagtttaccaaGggctttatgctatctagccc	7	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	36264927	C	C	36264927	1	2	229	0	1	0	0	0	0	0	0	0	13138	1015	35	4		4	RANBP3L	5	36264927	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	226779	36264927	144650333	717	173861											
C5orf42	65250	broad.mit.edu	37	chr5	37107688	37107688	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctgtgcatggaaaccCaatgatatccaggtcttaca	9	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37107688	A	A	37107688	1	1	229	0	1	0	0	0	0	0	0	0	2324	609	21	2		2	C5orf42	5	37107688	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	842761	37107688	143807572	718	173862											
C5orf42	65250	broad.mit.edu	37	chr5	37122497	37122497	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcctcagctaaggaagttaGagagaaaacacagggttaca	11	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37122497	T	T	37122497	1	4	229	0	1	0	0	0	0	0	0	0	2324	957	33	3		3	C5orf42	5	37122497	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	14809	37122497	143792763	719	173863											
NUP155	9631	broad.mit.edu	37	chr5	37292071	37292071	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcttgtactgctactgaCgagctcatagactggagctc	11	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37292071	T	T	37292071	2	4	229	1	0	0	0	0	0	0	0	1	10851	523	19	4		4	NUP155	5	37292071	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	169574	37292071	143623189	720	173864											
RICTOR	253260	broad.mit.edu	37	chr5	38945287	38945287	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctctaattgtatgcaataTaccaaacacttccaaaactt	2	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38945287	A	A	38945287	1	1	229	0	1	0	0	0	0	0	0	0	13467	1421	49	5		5	RICTOR	5	38945287	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1653216	38945287	141969973	721	173865											
C6	729	broad.mit.edu	37	chr5	41155107	41155107	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccttgtctccaggtccCgtctggtaagcatctgaagt	9	13	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41155107	A	A	41155107	3	1	229	1	0	0	0	0	1	0	0	0	2338	652	23	1	756	1	C6	5	41155107	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2209820	41155107	139760153	722	173866											
ITGA1	3672	broad.mit.edu	37	chr5	52145249	52145249	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgtgaaaaattcaatgActttcagcggcccggtggaa	11	7	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52145249	T	T	52145249	3	4	229	1	0	0	0	0	1	0	0	0	7942	275	10	5	118	5	ITGA1	5	52145249	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	10990142	52145249	128770011	723	173867											
CCNO	10309	broad.mit.edu	37	chr5	54528249	54528249	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagcagtctgcagccacCggcgtggtggtgaggaagcg	18	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54528249	A	A	54528249	2	1	229	1	0	0	0	0	0	0	0	1	2963	639	23	1		1	CCNO	5	54528249	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2383000	54528249	126387011	724	173868											
HTR1A	3350	broad.mit.edu	37	chr5	63256774	63256774	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctccagttcctgctccccGactctccattcacactcttc	4	20	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63256774	A	A	63256774	3	1	229	1	0	0	0	0	1	0	0	0	7506	1059	37	4	498	4	HTR1A	5	63256774	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	8728525	63256774	117658486	725	173869											
ADAMTS6	11174	broad.mit.edu	37	chr5	64756275	64756275	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctccatttacagggttaAaacacgttaataaaaaaatt	4	7	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64756275	C	C	64756275	1	2	229	0	1	0	0	0	0	0	0	0	270	29	1	5		5	ADAMTS6	5	64756275	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1499501	64756275	116158985	726	173870											
NLN	57486	broad.mit.edu	37	chr5	65054393	65054393	+	Splice_Site	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	tctttttctgattctttttaGagttggtggttccaggattt	9	5	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65054393	A	A	65054393	5	1	229	1	0	0	0	0	0	0	1	0	10562	956	33	4	47	4	NLN	5	65054393	Splice_Site	SNP	G	TCGA-91-6836-01A-21D-1855-08	298118	65054393	115860867	727	173871											
PIK3R1	5295	broad.mit.edu	37	chr5	67589651	67589651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattatatgaagaatataccCgcacatcccaggtgagtttt	8	8	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67589651	A	A	67589651	3	1	229	1	0	0	0	0	1	0	0	0	12013	652	23	1	1582	1	PIK3R1	5	67589651	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2535258	67589651	113325609	728	173872											
TNPO1	3842	broad.mit.edu	37	chr5	72189009	72189009	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcagtctggattccttcCgtactgtgaacctgtgtatc	9	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72189009	A	A	72189009	3	1	229	1	0	0	0	0	1	0	0	0	16458	652	23	1	1894	1	TNPO1	5	72189009	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4599358	72189009	108726251	729	173873											
GFM2	84340	broad.mit.edu	37	chr5	74034397	74034397	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtaaatgcgcataaaaaCcagtggtcctcgctgcttgt	10	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74034397	T	T	74034397	3	4	229	1	0	0	0	0	1	0	0	0	6406	507	18	4	1257	4	GFM2	5	74034397	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1845388	74034397	106880863	730	173874											
EDIL3	10085	broad.mit.edu	37	chr5	83680180	83680180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaagagccagacggctaCcgagcgcttcatgatcccgt	11	14	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83680180	A	A	83680180	3	1	229	1	0	0	0	0	1	0	0	0	4955	507	18	3	1473	3	EDIL3	5	83680180	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	9645783	83680180	97235080	731	173875											
MBLAC2	153364	broad.mit.edu	37	chr5	89757070	89757070	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaactttgtgacatatccCagcttttgaaatatagttag	7	6	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89757070	A	A	89757070	3	1	229	1	0	0	0	0	1	0	0	0	9445	594	21	2	89	2	MBLAC2	5	89757070	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6076890	89757070	91158190	732	173876											
GPR98	84059	broad.mit.edu	37	chr5	89933562	89933562	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatacattcccttacatcgGgatggaactgatggccaggc	11	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89933562	T	T	89933562	2	4	229	1	0	0	0	0	0	0	0	1	6787	1219	43	2		2	GPR98	5	89933562	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	176492	89933562	90981698	733	173877											
ARSK	153642	broad.mit.edu	37	chr5	94891012	94891012	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgggtgtcggtggtcgcAgccttggcgctggcggtact	18	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94891012	T	T	94891012	2	4	229	1	0	0	0	0	0	0	0	1	1000	175	7	5		5	ARSK	5	94891012	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	4957450	94891012	86024248	734	173878											
ARSK	153642	broad.mit.edu	37	chr5	94919012	94919012	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaaatttgaaaattgtAtattcaaacttgaccaataa	4	4	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94919012	T	T	94919012	1	4	229	0	1	0	0	0	0	0	0	0	1000	464	16	5		5	ARSK	5	94919012	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	28000	94919012	85996248	735	173879											
RIOK2	55781	broad.mit.edu	37	chr5	96513588	96513588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcataaagaccatatttcaGttacattgtacaaccaagtc	5	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	96513588	T	T	96513588	1	4	229	0	1	0	0	0	0	0	0	0	13489	1044	36	3		3	RIOK2	5	96513588	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1594576	96513588	84401672	736	173880											
SLCO6A1	133482	broad.mit.edu	37	chr5	101709339	101709339	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attttagaatgcaattaatgCcataaaattatattaagtta	4	3	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101709339	A	A	101709339	1	1	229	0	1	0	0	0	0	0	0	0	14846	754	26	3		3	SLCO6A1	5	101709339	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5195751	101709339	79205921	737	173881											
PAM	5066	broad.mit.edu	37	chr5	102237031	102237031	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttactagcaacagtttaaTttggattttttaatcttttt	4	6	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102237031	C	C	102237031	1	2	229	0	1	0	0	0	0	0	0	0	11506	1508	52	5		5	PAM	5	102237031	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	527692	102237031	78678229	738	173882											
PAM	5066	broad.mit.edu	37	chr5	102249819	102249819	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gtattttacaactagttaatAaataggcagaacattttaag	6	4	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102249819	C	C	102249819	1	2	229	0	1	0	0	0	0	0	0	0	11506	377	13	5		5	PAM	5	102249819	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	12788	102249819	78665441	739	173883											
APC	324	broad.mit.edu	37	chr5	112102913	112102913	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagatagcagtaatttccCtggagtaaaactgcggtcaa	9	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112102913	A	A	112102913	3	1	229	1	0	0	0	0	1	0	0	0	765	681	24	2	258	2	APC	5	112102913	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	9853094	112102913	68812347	740	173884											
YTHDC2	64848	broad.mit.edu	37	chr5	112903427	112903427	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tatttatgatgaaatgaccaGagcccatagaatagctaata	7	6	0	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112903427	T	T	112903427	3	4	229	1	0	0	0	0	1	0	0	0	17624	942	33	3	3215	3	YTHDC2	5	112903427	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	800514	112903427	68011833	741	173885											
TRIM36	55521	broad.mit.edu	37	chr5	114466308	114466308	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggactaactgcatcccGgggagaacggagccattctt	11	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	114466308	T	T	114466308	2	4	229	1	0	0	0	0	0	0	0	1	16634	1115	39	1		1	TRIM36	5	114466308	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1562881	114466308	66448952	742	173886											
AP3S1	1176	broad.mit.edu	37	chr5	115205814	115205814	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagtgaacttggcattttaGatctaattcaagtaagttaa	7	4	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	115205814	T	T	115205814	3	4	229	1	0	0	0	0	1	0	0	0	751	942	33	3	272	3	AP3S1	5	115205814	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	739506	115205814	65709446	743	173887											
PRRC1	133619	broad.mit.edu	37	chr5	126860497	126860497	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttacctgcacccccttcGggtcctcctatatcaggatt	6	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126860497	T	T	126860497	2	4	229	1	0	0	0	0	0	0	0	1	12710	1103	39	1		1	PRRC1	5	126860497	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	11654683	126860497	54054763	744	173888											
RAPGEF6	51735	broad.mit.edu	37	chr5	131054658	131054658	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaaagtgatacatttcccCctgtatccataagcacttac	4	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131054658	A	A	131054658	1	1	229	0	1	0	0	0	0	0	0	0	13156	638	22	2		2	RAPGEF6	5	131054658	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4194161	131054658	49860602	745	173889											
IL13	3596	broad.mit.edu	37	chr5	131993990	131993990	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcctccccaggccctgtgCctccctctacagccctcagg	8	20	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131993990	T	T	131993990	3	4	229	1	0	0	0	0	1	0	0	0	7698	739	26	4	114	4	IL13	5	131993990	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	939332	131993990	48921270	746	173890											
IL4	3565	broad.mit.edu	37	chr5	132009745	132009745	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaatcgacacctattaatGggtctcacctcccaactgct	6	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132009745	T	T	132009745	3	4	229	1	0	0	0	0	1	0	0	0	7766	1348	47	2	5	2	IL4	5	132009745	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	15755	132009745	48905515	747	173891											
SEPT8	23176	broad.mit.edu	37	chr5	132101159	132101159	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttgctgaccagctggtcGgggaggctgtcgaaacccac	14	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132101159	T	T	132101159	2	4	229	1	0	0	0	0	0	0	0	1	14183	1103	39	1		1	SEPT8	5	132101159	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	91414	132101159	48814101	748	173892											
CDKL3	51265	broad.mit.edu	37	chr5	133702193	133702193	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	acttccctctcccacttttcCaagggtttcatacatctcca	3	16	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133702193	T	T	133702193	3	4	229	1	0	0	0	0	1	0	0	0	3185	603	21	4	1808	4	CDKL3	5	133702193	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1601034	133702193	47213067	749	173893											
PHF15	23338	broad.mit.edu	37	chr5	133887800	133887800	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactcataccagctcagccCggatgactactacatcctgg	9	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133887800	A	A	133887800	3	1	229	1	0	0	0	0	1	0	0	0	11921	652	23	1	222	1	PHF15	5	133887800	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	185607	133887800	47027460	750	173894											
SEC24A	10802	broad.mit.edu	37	chr5	134002613	134002614	+	Missense_Mutation	DNP	GG	TT	TT													ggaggcccacccccagtgagGgccctcacgcccctgacatc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	134002614	TT	TT	134002613	3	4	229	1	0	0	0	0	1	0	0	0	14107	1223	43	2	676	2	SEC24A	5	134002613	Missense_Mutation	DNP	GG	TCGA-91-6836-01A-21D-1855-08	114813	134002613	46912647	751	173895											
H2AFY	9555	broad.mit.edu	37	chr5	134705031	134705031	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggaatgaggggggtgccCtggtaaccctgtttatccgt	17	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134705031	A	A	134705031	1	1	229	0	1	0	0	0	0	0	0	0	6994	696	24	2		2	H2AFY	5	134705031	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	702418	134705031	46210229	752	173896											
KIF20A	10112	broad.mit.edu	37	chr5	137519858	137519858	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttcctggacaccactgGggatggtgctaggataccca	12	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137519858	T	T	137519858	1	4	229	0	1	0	0	0	0	0	0	0	8356	1247	43	2		2	KIF20A	5	137519858	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2814827	137519858	43395402	753	173897											
PSD2	84249	broad.mit.edu	37	chr5	139193892	139193892	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcatcggctggcacgccGtctctaccacctcgagggct	11	16	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139193892	T	T	139193892	3	4	229	1	0	0	0	0	1	0	0	0	12753	1145	40	3	969	3	PSD2	5	139193892	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1674034	139193892	41721368	754	173898											
HBEGF	1839	broad.mit.edu	37	chr5	139722344	139722344	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttcttctttcttttccCgtgctcctccttgtttggtg	7	13	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139722344	A	A	139722344	3	1	229	1	0	0	0	0	1	0	0	0	7047	652	23	1	364	1	HBEGF	5	139722344	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	528452	139722344	41192916	755	173899											
SLC4A9	83697	broad.mit.edu	37	chr5	139740437	139740437	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggaggtggctgcaggcCggtggagtgccccccacgtg	18	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139740437	A	A	139740437	2	1	229	1	0	0	0	0	0	0	0	1	14774	643	23	1		1	SLC4A9	5	139740437	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	18093	139740437	41174823	756	173900											
PCDHB4	56131	broad.mit.edu	37	chr5	140501701	140501701	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttggaggaaacagagagcGgctcctttgtagcccatctg	13	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	140501701	C	C	140501701	3	2	229	1	0	0	0	0	1	0	0	0	11638	1116	39	4	123	4	PCDHB4	5	140501701	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	761264	140501701	40413559	757	173901											
PCDHB9	56127	broad.mit.edu	37	chr5	140568789	140568789	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaggctgctgagcgagcGcgacgcagccaagcacaggc	15	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140568789	T	T	140568789	3	4	229	1	0	0	0	0	1	0	0	0	11643	1087	38	3	1899	3	PCDHB9	5	140568789	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	67088	140568789	40346471	758	173902											
PCDHB11	56125	broad.mit.edu	37	chr5	140579964	140579964	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggattatgaagagctccCggagctcagtttcatcctct	10	11	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140579964	A	A	140579964	3	1	229	1	0	0	0	0	1	0	0	0	11630	652	23	1	619	1	PCDHB11	5	140579964	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	11175	140579964	40335296	759	173903											
PCDHB12	56124	broad.mit.edu	37	chr5	140588603	140588603	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggaggaattgcagagcGggagctttgtaggaaatttg	16	3	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140588603	T	T	140588603	3	4	229	1	0	0	0	0	1	0	0	0	11631	1116	39	1	126	1	PCDHB12	5	140588603	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	8639	140588603	40326657	760	173904											
SLC25A2	83884	broad.mit.edu	37	chr5	140682832	140682832	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tagttcatcttttgatctccCtgacgcaaaaaacgatcggc	7	11	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140682832	A	A	140682832	3	1	229	1	0	0	0	0	1	0	0	0	14596	681	24	2	308	2	SLC25A2	5	140682832	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	94229	140682832	40232428	761	173905											
PCDHGB4	8641	broad.mit.edu	37	chr5	140768013	140768013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaataaagagaaatcagatGgcagtaaataccctgagatg	9	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140768013	T	T	140768013	3	4	229	1	0	0	0	0	1	0	0	0	11659	1348	47	2	564	2	PCDHGB4	5	140768013	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	85181	140768013	40147247	762	173906											
DIAPH1	1729	broad.mit.edu	37	chr5	140958642	140958642	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttgggcccagtttcagGggatatacatgccttcagtg	11	9	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	140958642	T	T	140958642	1	4	229	0	1	0	0	0	0	0	0	0	4558	1247	43	2		2	DIAPH1	5	140958642	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	190629	140958642	39956618	763	173907											
PCDH1	5097	broad.mit.edu	37	chr5	141244219	141244219	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggatctctccagtctcGggtgagatggtgaagaggcc	14	10	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141244219	A	A	141244219	2	1	229	1	0	0	0	0	0	0	0	1	11600	1103	39	4		4	PCDH1	5	141244219	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	285577	141244219	39671041	764	173908											
PCDH12	51294	broad.mit.edu	37	chr5	141325308	141325308	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacggtagttggtggtgaGgggcaaagagagtctcgcca	17	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141325308	A	A	141325308	3	1	229	1	0	0	0	0	1	0	0	0	11604	1000	35	4	365	4	PCDH12	5	141325308	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	81089	141325308	39589952	765	173909											
ARHGAP26	23092	broad.mit.edu	37	chr5	142513549	142513549	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagatatttaacaccgtgccCgatatgcctctcaccaatgc	6	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142513549	A	A	142513549	2	1	229	1	0	0	0	0	0	0	0	1	877	639	23	1		1	ARHGAP26	5	142513549	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1188241	142513549	38401711	766	173910											
NR3C1	2908	broad.mit.edu	37	chr5	142675083	142675083	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcataagatacctgaagCctgtgtaactcagaggaaac	8	9	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	142675083	A	A	142675083	3	1	229	1	0	0	0	0	1	0	0	0	10725	738	26	3	432	3	NR3C1	5	142675083	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	161534	142675083	38240177	767	173911											
RBM27	54439	broad.mit.edu	37	chr5	145631245	145631245	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcttgtgactctcattccCagctgccctcctattctttc	5	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	145631245	A	A	145631245	1	1	229	0	1	0	0	0	0	0	0	0	13235	609	21	2		2	RBM27	5	145631245	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2956162	145631245	35284015	768	173912											
GPR151	134391	broad.mit.edu	37	chr5	145894611	145894611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttctggtatggatgctgGggattctggagatggaacct	14	5	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145894611	T	T	145894611	3	4	229	1	0	0	0	0	1	0	0	0	6722	1232	43	2	197	2	GPR151	5	145894611	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	263366	145894611	35020649	769	173913											
PPP2R2B	5521	broad.mit.edu	37	chr5	146077843	146077843	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatgagggcagggccatgAtagtcactagcacctctgaa	13	9	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	146077843	C	C	146077843	1	2	229	0	1	0	0	0	0	0	0	0	12486	348	12	5		5	PPP2R2B	5	146077843	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	183232	146077843	34837417	770	173914											
JAKMIP2	9832	broad.mit.edu	37	chr5	147019228	147019228	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcgtcgatgatgcctccCgtctgctcctgtaggagggc	13	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	147019228	A	A	147019228	2	1	229	1	0	0	0	0	0	0	0	1	8011	639	23	1		1	JAKMIP2	5	147019228	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	941385	147019228	33896032	771	173915											
GRPEL2	134266	broad.mit.edu	37	chr5	148730431	148730431	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccaaactctatgcccacGggcagagtgatttcctcaca	7	14	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148730431	T	T	148730431	1	4	229	0	1	0	0	0	0	0	0	0	6873	1131	39	1		1	GRPEL2	5	148730431	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1711203	148730431	32184829	772	173916											
PPARGC1B	133522	broad.mit.edu	37	chr5	149214963	149214963	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccactggcaggtgccttcAggaaaacacccgtgcatctc	9	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149214963	T	T	149214963	1	4	229	0	1	0	0	0	0	0	0	0	12397	203	7	5		5	PPARGC1B	5	149214963	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	484532	149214963	31700297	773	173917											
CAMK2A	815	broad.mit.edu	37	chr5	149636103	149636103	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggagagaggggctccCggggtgagccacacccacgg	18	12	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149636103	A	A	149636103	1	1	229	0	1	0	0	0	0	0	0	0	2625	667	23	1		1	CAMK2A	5	149636103	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	421140	149636103	31279157	774	173918											
FAT2	2196	broad.mit.edu	37	chr5	150943133	150943133	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcacagaacccctgtccacTgctaataccgtcaaccagta	7	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	150943133	G	G	150943133	2	3	229	1	0	0	0	0	0	0	0	1	5747	1567	55	5		5	FAT2	5	150943133	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	1307030	150943133	29972127	775	173919											
SPARC	6678	broad.mit.edu	37	chr5	151047110	151047110	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacgttcttgagccagtccCgcatgcgcagggggaattcg	15	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	151047110	A	A	151047110	3	1	229	1	0	0	0	0	1	0	0	0	15111	652	23	1	424	1	SPARC	5	151047110	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	103977	151047110	29868150	776	173920											
KIF4B	285643	broad.mit.edu	37	chr5	154395071	154395071	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagaacgacaaccaactacAgcccattcagtttcaatacc	4	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	154395071	T	T	154395071	3	4	229	1	0	0	0	0	1	0	0	0	8374	188	7	5	1654	5	KIF4B	5	154395071	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	3347961	154395071	26520189	777	173921											
SGCD	6444	broad.mit.edu	37	chr5	156186407	156186407	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgtctgcctctgaaagacTatccatagtggacattgttg	10	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	156186407	A	A	156186407	1	1	229	0	1	0	0	0	0	0	0	0	14314	1537	53	5		5	SGCD	5	156186407	3'UTR	SNP	T	TCGA-91-6836-01A-21D-1855-08	1791336	156186407	24728853	778	173922											
FAM71B	153745	broad.mit.edu	37	chr5	156590559	156590559	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagccgttccgtgggaggcAtgttggattccctctccccc	11	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	156590559	C	C	156590559	3	2	229	1	0	0	0	0	1	0	0	0	5659	214	8	5	1104	5	FAM71B	5	156590559	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	404152	156590559	24324701	779	173923											
ADAM19	8728	broad.mit.edu	37	chr5	156915542	156915542	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagacaagaaatcactcaGggctggccttgtgtgtctct	11	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	156915542	T	T	156915542	1	4	229	0	1	0	0	0	0	0	0	0	240	1015	35	2		2	ADAM19	5	156915542	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	324983	156915542	23999718	780	173924											
ATP10B	23120	broad.mit.edu	37	chr5	160061621	160061621	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggggatcagcacctgaaaaGagatgagtttctaccattca	10	8	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	160061621	T	T	160061621	1	4	229	0	1	0	0	0	0	0	0	0	1121	957	33	3		3	ATP10B	5	160061621	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3146079	160061621	20853639	781	173925											
GABRA6	2559	broad.mit.edu	37	chr5	161119185	161119185	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atatcaaaagctactgaaccTttggaagctgagattgtttt	8	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	161119185	A	A	161119185	2	1	229	1	0	0	0	0	0	0	0	1	6225	1596	56	5		5	GABRA6	5	161119185	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	1057564	161119185	19796075	782	173926											
ODZ2	57451	broad.mit.edu	37	chr5	167420138	167420138	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaatgtgctgccctctcCgccattgccgcggccctcct	10	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	167420138	A	A	167420138	2	1	229	1	0	0	0	0	0	0	0	1	10930	639	23	1		1	ODZ2	5	167420138	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	6300953	167420138	13495122	783	173927											
SLIT3	6586	broad.mit.edu	37	chr5	168201502	168201502	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccttgcagccttgagCtcctgctgcagaacagaaaa	8	13	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	168201502	T	T	168201502	1	4	229	0	1	0	0	0	0	0	0	0	14855	812	28	4		4	SLIT3	5	168201502	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	781364	168201502	12713758	784	173928											
SLIT3	6586	broad.mit.edu	37	chr5	168690747	168690747	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	tccatctcgtgctggcttctCccttccctgaacttctgaac	6	16	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	168690747	G	G	168690747	1	3	229	0	1	0	0	0	0	0	0	0	14855	870	30	4		4	SLIT3	5	168690747	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	489245	168690747	12224513	785	173929											
DOCK2	1794	broad.mit.edu	37	chr5	169122951	169122951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggggtggcaggtaaggggCacactctgcatcattgattt	14	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	169122951	A	A	169122951	1	1	229	0	1	0	0	0	0	0	0	0	4727	725	25	3		3	DOCK2	5	169122951	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	432204	169122951	11792309	786	173930											
KCNIP1	30820	broad.mit.edu	37	chr5	170159926	170159926	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtaagtgcacacaccctGcacatgagctgtaagcccag	10	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	170159926	T	T	170159926	1	4	229	0	1	0	0	0	0	0	0	0	8109	1334	46	3		3	KCNIP1	5	170159926	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1036975	170159926	10755334	787	173931											
KCNIP1	30820	broad.mit.edu	37	chr5	170160894	170160894	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tagatgaatttcttgaatcaTgtcaggaggtaaggagagat	12	3	3	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	170160894	C	C	170160894	3	2	229	1	0	0	0	0	1	0	0	0	8109	1464	51	5	750	5	KCNIP1	5	170160894	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	968	170160894	10754366	788	173932											
STK10	6793	broad.mit.edu	37	chr5	171488252	171488252	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agctccaggtcctccttctgCttggctacaaagtcccggtc	9	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	171488252	T	T	171488252	2	4	229	1	0	0	0	0	0	0	0	1	15404	796	28	4		4	STK10	5	171488252	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1327358	171488252	9427008	789	173933											
CLTB	1212	broad.mit.edu	37	chr5	175843437	175843437	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccgcgctgcgtccggcgGccgcgacgctgtcacccgag	15	19	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	175843437	A	A	175843437	1	1	229	0	1	0	0	0	0	0	0	0	3597	1218	42	4		4	CLTB	5	175843437	5'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	4355185	175843437	5071823	790	173934											
CDHR2	54825	broad.mit.edu	37	chr5	175995856	175995856	+	Intron	DEL	G	-	-													gagagggcacgggacgcggaGggggtgctgggagggccctg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	175995856	-	-	175995856	6	5	229	0	1	1	0	1	0	0	0	0	3149	1015	35	0		0	CDHR2	5	175995856	Intron	DEL	G	TCGA-91-6836-01A-21D-1855-08	152419	175995856	4919404	791	173935											
TSPAN17	26262	broad.mit.edu	37	chr5	176078805	176078805	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatctgggaggccttgacccCgtgtggctgtttgtggtagt	16	8	1	1	rs35207938	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	176078805	A	A	176078805	2	1	229	1	0	0	0	0	0	0	0	1	16766	639	23	1		1	TSPAN17	5	176078805	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	82949	176078805	4836455	792	173936											
COL23A1	91522	broad.mit.edu	37	chr5	177771830	177771830	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgtagctcaggcccatGgatctcattgaagatggcgg	12	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	177771830	T	T	177771830	1	4	229	0	1	0	0	0	0	0	0	0	3714	1363	47	2		2	COL23A1	5	177771830	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1693025	177771830	3143430	793	173937											
ZNF454	285676	broad.mit.edu	37	chr5	178392832	178392833	+	Missense_Mutation	DNP	CC	AA	AA													atgtaaaatctgtgagaaagCctttatccgaagcactcacc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	178392833	AA	AA	178392832	3	1	229	1	0	0	0	0	1	0	0	0	18050	739	26	3	1441	3	ZNF454	5	178392832	Missense_Mutation	DNP	CC	TCGA-91-6836-01A-21D-1855-08	621002	178392832	2522428	794	173938											
MAPK9	5601	broad.mit.edu	37	chr5	179668120	179668120	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttgtcaggatcaatcaCtaacatttttgataacagat	6	9	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	179668120	G	G	179668120	3	3	229	1	0	0	0	0	1	0	0	0	9379	565	20	4	388	4	MAPK9	5	179668120	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1275288	179668120	1247140	795	173939											
DUSP22	56940	broad.mit.edu	37	chr6	304532	304532	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtactggggaagcacctggCctttgcagggatcctgctgc	14	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	304532	G	G	304532	1	3	229	0	1	0	0	0	0	0	0	0	4861	754	26	4		4	DUSP22	6	304532	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08		304532	170810535	796	173940											
DUSP22	56940	broad.mit.edu	37	chr6	345854	345854	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctttttttcttttcccagGacaagacatttcaaagaaag	5	9	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	345854	T	T	345854	2	4	229	1	0	0	0	0	0	0	0	1	4861	1188	41	3		3	DUSP22	6	345854	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	41322	345854	170769213	797	173941											
MYLK4	340156	broad.mit.edu	37	chr6	2679540	2679540	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	taggcgatgacccccacactCcacatgtcagtgggaaatga	10	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2679540	A	A	2679540	3	1	229	1	0	0	0	0	1	0	0	0	10153	856	30	3	321	3	MYLK4	6	2679540	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2333686	2679540	168435527	798	173942											
PRPF4B	8899	broad.mit.edu	37	chr6	4056788	4056788	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgagttcattcatgaggaaGggaaccatagcaagttcatc	10	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	4056788	T	T	4056788	1	4	229	0	1	0	0	0	0	0	0	0	12679	1015	35	2		2	PRPF4B	6	4056788	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1377248	4056788	167058279	799	173943											
FARS2	10667	broad.mit.edu	37	chr6	5609942	5609942	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	catttctgaatgacagtcttAtccacggagtcatggtcgtc	9	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5609942	T	T	5609942	1	4	229	0	1	0	0	0	0	0	0	0	5735	464	16	5		5	FARS2	6	5609942	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1553154	5609942	165505125	800	173944											
RIOK1	83732	broad.mit.edu	37	chr6	7405521	7405521	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgtcatgactgtgcGggagctctttgaatttgtca	12	7	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7405521	T	T	7405521	3	4	229	1	0	0	0	0	1	0	0	0	13488	1116	39	1	1182	1	RIOK1	6	7405521	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1795579	7405521	163709546	801	173945											
SYCP2L	221711	broad.mit.edu	37	chr6	10894542	10894542	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgttcctttgaaatccaAtttgaaaagaaattgatatc	5	6	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10894542	G	G	10894542	1	3	229	0	1	0	0	0	0	0	0	0	15552	116	4	5		5	SYCP2L	6	10894542	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	3489021	10894542	160220525	802	173946											
SYCP2L	221711	broad.mit.edu	37	chr6	10928648	10928648	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccatagcttcagccggtcCctccgttcggggtccctgac	11	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10928648	A	A	10928648	3	1	229	1	0	0	0	0	1	0	0	0	15552	623	22	2	1523	2	SYCP2L	6	10928648	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	34106	10928648	160186419	803	173947											
NEDD9	4739	broad.mit.edu	37	chr6	11190425	11190425	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgcaagctgccagggccGggtctgaagagggcctctgc	16	11	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11190425	T	T	11190425	2	4	229	1	0	0	0	0	0	0	0	1	10408	1103	39	1		1	NEDD9	6	11190425	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	261777	11190425	159924642	804	173948											
C6orf105	84830	broad.mit.edu	37	chr6	11723709	11723709	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggatacacccaggtaccCgtctcaaagtagagccatag	9	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11723709	A	A	11723709	2	1	229	1	0	0	0	0	0	0	0	1	2341	639	23	1		1	C6orf105	6	11723709	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	533284	11723709	159391358	805	173949											
HIVEP1	3096	broad.mit.edu	37	chr6	12015888	12015888	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaactaaacaaattcatccCagaaatctaagaggtaaagc	6	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	12015888	A	A	12015888	2	1	229	1	0	0	0	0	0	0	0	1	7253	581	21	2		2	HIVEP1	6	12015888	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	292179	12015888	159099179	806	173950											
EDN1	1906	broad.mit.edu	37	chr6	12290835	12290835	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgggttcagtttgaacGggaggtttttgatccctttt	11	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12290835	T	T	12290835	1	4	229	0	1	0	0	0	0	0	0	0	4956	1131	39	1		1	EDN1	6	12290835	5'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	274947	12290835	158824232	807	173951											
TBC1D7	51256	broad.mit.edu	37	chr6	13288667	13288667	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataacagagctcgcaggccCtcagttgcagagctctctca	9	14	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13288667	A	A	13288667	1	1	229	0	1	0	0	0	0	0	0	0	15746	696	24	2		2	TBC1D7	6	13288667	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	997832	13288667	157826400	808	173952											
HIST1H2BA	255626	broad.mit.edu	37	chr6	25727536	25727536	+	3'UTR	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaagcctgctaagtaaacGtcatttctaacccaaaggct	7	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	25727536	C	C	25727536	1	2	229	0	1	0	0	0	0	0	0	0	7207	1160	40	4		4	HIST1H2BA	6	25727536	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	12438869	25727536	145387531	809	173953											
HIST1H2BC	8347	broad.mit.edu	37	chr6	26123895	26123895	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttgtaatgcgccaggcGggaagcctcgcccgcgatgc	14	13	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26123895	T	T	26123895	3	4	229	1	0	0	0	0	1	0	0	0	7209	1116	39	1	146	1	HIST1H2BC	6	26123895	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	396359	26123895	144991172	810	173954											
BTN2A2	10385	broad.mit.edu	37	chr6	26391098	26391098	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagatctcagctttctccCcactagccagctaacaggac	6	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26391098	A	A	26391098	1	1	229	0	1	0	0	0	0	0	0	0	1571	638	22	2		2	BTN2A2	6	26391098	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	267203	26391098	144723969	811	173955											
ZKSCAN4	387032	broad.mit.edu	37	chr6	28217607	28217607	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcccctggtcaccaacGggaacctagaagtcacgatt	9	13	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28217607	T	T	28217607	2	4	229	1	0	0	0	0	0	0	0	1	17815	1103	39	1		1	ZKSCAN4	6	28217607	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1826509	28217607	142897460	812	173956											
TRIM26	7726	broad.mit.edu	37	chr6	30157775	30157775	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaggtacgccatggagAggagactcttttacctgttt	13	7	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	30157775	G	G	30157775	1	3	229	0	1	0	0	0	0	0	0	0	16624	319	11	5		5	TRIM26	6	30157775	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1940168	30157775	140957292	813	173957											
MDC1	9656	broad.mit.edu	37	chr6	30672849	30672849	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaaggtgggagctcagGggctatagggacagttgatt	19	4	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30672849	T	T	30672849	3	4	229	1	0	0	0	0	1	0	0	0	9496	1232	43	2	2182	2	MDC1	6	30672849	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	515074	30672849	140442218	814	173958											
HLA-B	3106	broad.mit.edu	37	chr6	31256269	31256269	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctgcagcacttcttctttCcagaggtcaaataaatggga	8	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31256269	A	A	31256269	1	1	229	0	1	0	0	0	0	0	0	0	7263	870	30	3		3	HLA-B	6	31256269	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	583420	31256269	139858798	815	173959											
LY6G6F	259215	broad.mit.edu	37	chr6	31685371	31685371	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctcagccccagtgaccttGattcaccaacatccagcctg	6	17	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	31685371	C	C	31685371	3	2	229	1	0	0	0	0	1	0	0	0	9184	1281	45	4		4	LY6G6F	6	31685371	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	429102	31685371	139429696	816	173960											
ATF6B	1388	broad.mit.edu	37	chr6	32095947	32095947	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcggtgaagaaacgcgtcGggtcagcaatctcgctgagc	14	10	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32095947	T	T	32095947	3	4	229	1	0	0	0	0	1	0	0	0	1089	1116	39	1	2145	1	ATF6B	6	32095947	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	410576	32095947	139019120	817	173961											
COL11A2	1302	broad.mit.edu	37	chr6	33138235	33138235	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggagagaggaggaggagCagccaggccagggagttggc	22	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33138235	A	A	33138235	1	1	229	0	1	0	0	0	0	0	0	0	3700	725	25	3		3	COL11A2	6	33138235	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1042288	33138235	137976832	818	173962											
FTSJD2	23070	broad.mit.edu	37	chr6	37446174	37446174	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatgcacgtaccttctcGgggaaatcaggttggagatg	12	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37446174	T	T	37446174	1	4	229	0	1	0	0	0	0	0	0	0	6151	1131	39	1		1	FTSJD2	6	37446174	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4307939	37446174	133668893	819	173963											
ZFAND3	60685	broad.mit.edu	37	chr6	38120042	38120042	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatgttacatcgcctcccCgagcagcacgactgcacatt	8	14	0	0	rs142374943	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38120042	A	A	38120042	2	1	229	1	0	0	0	0	0	0	0	1	17755	639	23	1		1	ZFAND3	6	38120042	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	673868	38120042	132995025	820	173964											
MOCS1	4337	broad.mit.edu	37	chr6	39893559	39893559	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttggctttgggggtcagcGggaccccctcctcgggcatg	17	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39893559	T	T	39893559	3	4	229	1	0	0	0	0	1	0	0	0	9784	1116	39	1	908	1	MOCS1	6	39893559	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1773517	39893559	131221508	821	173965											
C6orf130	221443	broad.mit.edu	37	chr6	41037717	41037717	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agttgtctagaatagaacatCatgatcaacacaaatgcagt	7	7	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41037717	A	A	41037717	1	1	229	0	1	0	0	0	0	0	0	0	2352	841	29	3		3	C6orf130	6	41037717	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1144158	41037717	130077350	822	173966											
KIAA0240	23506	broad.mit.edu	37	chr6	42823608	42823608	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttaggtggagagtcattcGggaggacaaaaaaggcctgc	14	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42823608	T	T	42823608	2	4	229	1	0	0	0	0	0	0	0	1	8234	1103	39	1		1	KIAA0240	6	42823608	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1785891	42823608	128291459	823	173967											
GNMT	27232	broad.mit.edu	37	chr6	42931461	42931461	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtgtggcctcagctccCacaagcctctgcccaggcac	10	17	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42931461	A	A	42931461	1	1	229	0	1	0	0	0	0	0	0	0	6604	609	21	2		2	GNMT	6	42931461	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	107853	42931461	128183606	824	173968											
CLIC5	53405	broad.mit.edu	37	chr6	45923087	45923087	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagaccttactaaaaccaTgtcccagcaacttcaaaggg	8	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45923087	A	A	45923087	1	1	229	0	1	0	0	0	0	0	0	0	3561	1479	51	5		5	CLIC5	6	45923087	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2991626	45923087	125191980	825	173969											
GPR110	266977	broad.mit.edu	37	chr6	46977422	46977422	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtgatccattttacaacGgggaagattgtagaggggac	14	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46977422	T	T	46977422	2	4	229	1	0	0	0	0	0	0	0	1	6692	1103	39	1		1	GPR110	6	46977422	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1054335	46977422	124137645	826	173970											
MUT	4594	broad.mit.edu	37	chr6	49409760	49409760	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttaccataatattcaataTaattaaacattttattacat	1	5	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49409760	A	A	49409760	1	1	229	0	1	0	0	0	0	0	0	0	10085	1421	49	5		5	MUT	6	49409760	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2432338	49409760	121705307	827	173971											
TRAM2	9697	broad.mit.edu	37	chr6	52374326	52374326	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtcaacagaatactcacGggaggtgcacatgcgggtag	14	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52374326	T	T	52374326	3	4	229	1	0	0	0	0	1	0	0	0	16577	1130	39	1	670	1	TRAM2	6	52374326	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2964566	52374326	118740741	828	173972											
TMEM14A	28978	broad.mit.edu	37	chr6	52546593	52546594	+	Intron	INS	-	T	T													attctctttgtgatctcataINStttttttccccttccaggtg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52546594	T	T	52546593	6	5	229	0	1	1	1	0	0	0	0	0	16186	464	16	0		0	TMEM14A	6	52546593	Intron	INS	-	TCGA-91-6836-01A-21D-1855-08	172267	52546593	118568474	829	173973											
DST	667	broad.mit.edu	37	chr6	56479107	56479107	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aactgtgtcaactcagttaaCgtccctgctattattattat	5	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56479107	A	A	56479107	1	1	229	0	1	0	0	0	0	0	0	0	4823	551	19	3		3	DST	6	56479107	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3932514	56479107	114635960	830	173974											
EYS	346007	broad.mit.edu	37	chr6	66204789	66204789	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagagattcctggcagaacTgctgtttcactgtcacattt	8	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66204789	A	A	66204789	3	1	229	1	0	0	0	0	1	0	0	0	5375	1580	55	5	9041	5	EYS	6	66204789	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	9725682	66204789	104910278	831	173975											
BAI3	577	broad.mit.edu	37	chr6	69728346	69728346	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatacacattgttggaatgGggatgatggactttcagaat	11	4	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69728346	T	T	69728346	3	4	229	1	0	0	0	0	1	0	0	0	1305	1232	43	2	2104	2	BAI3	6	69728346	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3523557	69728346	101386721	832	173976											
LMBRD1	55788	broad.mit.edu	37	chr6	70415710	70415710	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctccactgctactaaatGttgttcactaatatgcactg	5	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70415710	T	T	70415710	1	4	229	0	1	0	0	0	0	0	0	0	8916	1392	48	3		3	LMBRD1	6	70415710	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	687364	70415710	100699357	833	173977											
COL9A1	1297	broad.mit.edu	37	chr6	70965127	70965127	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaattttgttaatacaagaaAaagttacttattaatcaact	3	4	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70965127	T	T	70965127	1	4	229	0	1	0	0	0	0	0	0	0	3739	29	1	5		5	COL9A1	6	70965127	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	549417	70965127	100149940	834	173978											
COL9A1	1297	broad.mit.edu	37	chr6	70981372	70981372	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actcacaacaggtcctacacGgccaagctctccagggagtc	9	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70981372	T	T	70981372	3	4	229	1	0	0	0	0	1	0	0	0	3739	1116	39	1	1736	1	COL9A1	6	70981372	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	16245	70981372	100133695	835	173979											
COL9A1	1297	broad.mit.edu	37	chr6	71009653	71009653	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaattataatccaagaaaCattgatcataagaaaactct	3	7	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71009653	T	T	71009653	1	4	229	0	1	0	0	0	0	0	0	0	3739	493	17	4		4	COL9A1	6	71009653	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	28281	71009653	100105414	836	173980											
CD109	135228	broad.mit.edu	37	chr6	74407275	74407275	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgtctctgtcctggaagCagaaggagtctttgaaaaag	11	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	74407275	G	G	74407275	3	3	229	1	0	0	0	0	1	0	0	0	2993	710	25	4	233	4	CD109	6	74407275	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3397622	74407275	96707792	837	173981											
COL12A1	1303	broad.mit.edu	37	chr6	75799864	75799864	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcatccctggtgtgcccGggaagcctggccgcccccca	12	19	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75799864	T	T	75799864	3	4	229	1	0	0	0	0	1	0	0	0	3701	1116	39	1	304	1	COL12A1	6	75799864	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1392589	75799864	95315203	838	173982											
MYO6	4646	broad.mit.edu	37	chr6	76602220	76602220	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taaacaagtgaagaactcttGgtgaaatagctttctgccct	8	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76602220	T	T	76602220	1	4	229	0	1	0	0	0	0	0	0	0	10175	1363	47	2		2	MYO6	6	76602220	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	802356	76602220	94512847	839	173983											
FAM46A	55603	broad.mit.edu	37	chr6	82461570	82461570	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttcacgatcaggctcgGctgcagctcgagcgtgggga	14	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82461570	T	T	82461570	3	4	229	1	0	0	0	0	1	0	0	0	5616	1203	42	3	1047	3	FAM46A	6	82461570	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5859350	82461570	88653497	840	173984											
CYB5R4	51167	broad.mit.edu	37	chr6	84569410	84569410	+	5'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accccggaagtgggtcggggGcttggcctctgcccggccac	16	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84569410	A	A	84569410	1	1	229	0	1	0	0	0	0	0	0	0	4162	1218	42	4		4	CYB5R4	6	84569410	5'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	2107840	84569410	86545657	841	173985											
TBX18	9096	broad.mit.edu	37	chr6	85422593	85422593	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgggaagccgaattctccAtagaagctcttggtaagggg	13	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	85422593	G	G	85422593	1	3	229	0	1	0	0	0	0	0	0	0	15775	232	8	5		5	TBX18	6	85422593	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	853183	85422593	85692474	842	173986											
TBX18	9096	broad.mit.edu	37	chr6	85466577	85466577	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatccatttcgaactgtGgtaaacatacctagaaggca	7	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85466577	T	T	85466577	3	4	229	1	0	0	0	0	1	0	0	0	15775	1348	47	2	1233	2	TBX18	6	85466577	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	43984	85466577	85648490	843	173987											
GABRR2	2570	broad.mit.edu	37	chr6	89978928	89978928	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctcatccttccagtaatgcCgcaggtacagggtcatagtg	10	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89978928	A	A	89978928	3	1	229	1	0	0	0	0	1	0	0	0	6237	652	23	1	1107	1	GABRR2	6	89978928	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4512351	89978928	81136139	844	173988											
MDN1	23195	broad.mit.edu	37	chr6	90366263	90366263	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cactgggtaaaccccatggtCgtggtctgctcaccaaggct	11	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90366263	A	A	90366263	1	1	229	0	1	0	0	0	0	0	0	0	9508	899	31	3		3	MDN1	6	90366263	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	387335	90366263	80748804	845	173989											
BACH2	60468	broad.mit.edu	37	chr6	90661490	90661490	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcgcaggaactcagcaCagcggatgacctcgcggatg	14	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	90661490	A	A	90661490	3	1	229	1	0	0	0	0	1	0	0	0	1289	478	17	3	2202	3	BACH2	6	90661490	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	295227	90661490	80453577	846	173990											
EPHA7	2045	broad.mit.edu	37	chr6	93968071	93968071	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttttaagagtaaatgCgttgaattatttttctttaa	5	3	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	93968071	G	G	93968071	1	3	229	0	1	0	0	0	0	0	0	0	5214	783	27	4		4	EPHA7	6	93968071	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3306581	93968071	77146996	847	173991											
GRIK2	2898	broad.mit.edu	37	chr6	102372663	102372663	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggggtgacagctcttGctggcacaagtcgcttgcat	14	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	102372663	C	C	102372663	1	2	229	0	1	0	0	0	0	0	0	0	6840	1334	46	4		4	GRIK2	6	102372663	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	8404592	102372663	68742404	848	173992											
GRIK2	2898	broad.mit.edu	37	chr6	102511944	102511944	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	gttagtatccttgtgcctttCttttttctttttgtagtctg	7	7	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	102511944	G	G	102511944	1	3	229	0	1	0	0	0	0	0	0	0	6840	928	32	4		4	GRIK2	6	102511944	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	139281	102511944	68603123	849	173993											
PREP	5550	broad.mit.edu	37	chr6	105776790	105776790	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgctgccgacatcgagcGggaaggtcttaaggagagca	14	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105776790	T	T	105776790	3	4	229	1	0	0	0	0	1	0	0	0	12580	1116	39	1	1033	1	PREP	6	105776790	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3264846	105776790	65338277	850	173994											
PRDM1	639	broad.mit.edu	37	chr6	106553533	106553533	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgccttctcctttaccGgggccgccgccagcatgaag	11	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106553533	T	T	106553533	3	4	229	1	0	0	0	0	1	0	0	0	12556	1116	39	1	1529	1	PRDM1	6	106553533	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	776743	106553533	64561534	851	173995											
SOBP	55084	broad.mit.edu	37	chr6	107854883	107854883	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acacgcgcatgtgcctcataGcttctagcggaaaacactgc	9	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107854883	A	A	107854883	1	1	229	0	1	0	0	0	0	0	0	0	15026	986	34	4		4	SOBP	6	107854883	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1301350	107854883	63260184	852	173996											
SCML4	256380	broad.mit.edu	37	chr6	108068029	108068029	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaaaatgctccgggagCtgctgcaccttcttcctctc	9	16	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108068029	A	A	108068029	3	1	229	1	0	0	0	0	1	0	0	0	14024	796	28	3	913	3	SCML4	6	108068029	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	213146	108068029	63047038	853	173997											
C6orf182	285753	broad.mit.edu	37	chr6	109480120	109480120	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttctgtccatgtcttttGcccattttccagttgcattg	6	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109480120	A	A	109480120	1	1	229	0	1	0	0	0	0	0	0	0	2369	1334	46	4		4	C6orf182	6	109480120	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1412091	109480120	61634947	854	173998											
LAMA4	3910	broad.mit.edu	37	chr6	112469461	112469461	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggccatgggggcagtggCctgctgcacctccatcgtcg	15	13	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112469461	T	T	112469461	3	4	229	1	0	0	0	0	1	0	0	0	8680	739	26	4	3308	4	LAMA4	6	112469461	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2989341	112469461	58645606	855	173999											
LAMA4	3910	broad.mit.edu	37	chr6	112510338	112510338	+	Frame_Shift_Del	DEL	G	-	-													ttgggcagtccatgcctgtaGggggttcaaaaccttcttcc					rs113248952		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	112510338	-	-	112510338	7	5	229	1	0	1	0	1	0	0	0	0	8680	1000	35	0	4815	0	LAMA4	6	112510338	Frame_Shift_Del	DEL	G	TCGA-91-6836-01A-21D-1855-08	40877	112510338	58604729	856	174000											
LAMA4	3910	broad.mit.edu	37	chr6	112521398	112521398	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcttacatgagcaaagcCcagagcagtttagaaaaaga	8	8	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112521398	T	T	112521398	1	4	229	0	1	0	0	0	0	0	0	0	8680	638	22	4		4	LAMA4	6	112521398	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11060	112521398	58593669	857	174001											
SLC35F1	222553	broad.mit.edu	37	chr6	118606475	118606475	+	Missense_Mutation	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacttgtacagcctgttcTgtggattgtttctcttccac	8	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	118606475	G	G	118606475	3	3	229	1	0	0	0	0	1	0	0	0	14702	1580	55	5	1002	5	SLC35F1	6	118606475	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	6085077	118606475	52508592	858	174002											
GJA1	2697	broad.mit.edu	37	chr6	121768117	121768117	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgctggggacagcggttGagtcagcctggggagatgag	19	7	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121768117	T	T	121768117	4	4	229	1	0	0	0	0	0	1	0	0	6464	1291	45	3	126	3	GJA1	6	121768117	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3161642	121768117	49346950	859	174003											
SMPDL3A	10924	broad.mit.edu	37	chr6	123127531	123127531	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagatttcagagctgacccCatatttatgcatatctttgc	7	10	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123127531	A	A	123127531	1	1	229	0	1	0	0	0	0	0	0	0	14922	609	21	2		2	SMPDL3A	6	123127531	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1359414	123127531	47987536	860	174004											
TRDN	10345	broad.mit.edu	37	chr6	123824837	123824837	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatattctcttagaacctcCggcagcctcctgctctgaat	6	14	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123824837	A	A	123824837	1	1	229	0	1	0	0	0	0	0	0	0	16592	667	23	1		1	TRDN	6	123824837	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	697306	123824837	47290230	861	174005											
TRDN	10345	broad.mit.edu	37	chr6	123957853	123957853	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgtggctgtcgatttgcAtattttttttccttacttga	7	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123957853	C	C	123957853	1	2	229	0	1	0	0	0	0	0	0	0	16592	232	8	5		5	TRDN	6	123957853	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	133016	123957853	47157214	862	174006											
LAMA2	3908	broad.mit.edu	37	chr6	129601234	129601234	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	caacgtgccatttagaccggAgtcttggattgatctgtgat	11	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129601234	T	T	129601234	3	4	229	1	0	0	0	0	1	0	0	0	8678	304	11	5	2549	5	LAMA2	6	129601234	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	5643381	129601234	41513833	863	174007											
TAAR8	83551	broad.mit.edu	37	chr6	132874617	132874617	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaaaaccctgggggtcacGgtactagcatttgttatttc	10	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	132874617	T	T	132874617	2	4	229	1	0	0	0	0	0	0	0	1	15612	1103	39	1		1	TAAR8	6	132874617	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3273383	132874617	38240450	864	174008											
TAAR6	319100	broad.mit.edu	37	chr6	132891511	132891511	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagctgtgctacgcgaaCgtgaatgggtcctgtgtgaa	15	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132891511	A	A	132891511	3	1	229	1	0	0	0	0	1	0	0	0	15611	535	19	3	53	3	TAAR6	6	132891511	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	16894	132891511	38223556	865	174009											
SGK1	6446	broad.mit.edu	37	chr6	134495848	134495848	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgtctcctggagcagaagtCccgcaagattcctgcactca	10	14	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134495848	A	A	134495848	1	1	229	0	1	0	0	0	0	0	0	0	14320	870	30	3		3	SGK1	6	134495848	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1604337	134495848	36619219	866	174010											
IL20RA	53832	broad.mit.edu	37	chr6	137323321	137323321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagggggcctcaggttccCgctgggctgaggatcattaa	15	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137323321	A	A	137323321	3	1	229	1	0	0	0	0	1	0	0	0	7738	652	23	1	629	1	IL20RA	6	137323321	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2827473	137323321	33791746	867	174011											
KIAA1244	57221	broad.mit.edu	37	chr6	138630049	138630049	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctgaggaccctttccaGggtggctctgtggctggaga	15	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138630049	T	T	138630049	1	4	229	0	1	0	0	0	0	0	0	0	8287	1015	35	2		2	KIAA1244	6	138630049	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1306728	138630049	32485018	868	174012											
HIVEP2	3097	broad.mit.edu	37	chr6	143091192	143091192	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcatctgaagattctttgcTttcagaaggcccactggact	8	10	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143091192	A	A	143091192	3	1	229	1	0	0	0	0	1	0	0	0	7254	1609	56	5	2680	5	HIVEP2	6	143091192	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	4461143	143091192	28023875	869	174013											
UTRN	7402	broad.mit.edu	37	chr6	144759780	144759780	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taccttgaatgtttagacaaGggtgtcttcccttgccctgt	9	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144759780	T	T	144759780	1	4	229	0	1	0	0	0	0	0	0	0	17230	1015	35	2		2	UTRN	6	144759780	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1668588	144759780	26355287	870	174014											
UTRN	7402	broad.mit.edu	37	chr6	144838074	144838074	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acttttgcatactagatacaAcaaaattaaggtattatgat	5	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	144838074	G	G	144838074	3	3	229	1	0	0	0	0	1	0	0	0	17230	43	2	5	5681	5	UTRN	6	144838074	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	78294	144838074	26276993	871	174015											
SYNE1	23345	broad.mit.edu	37	chr6	152477332	152477332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggctaggctacaccttgaCaaatatttaatttccttgaa	6	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152477332	A	A	152477332	1	1	229	0	1	0	0	0	0	0	0	0	15564	493	17	3		3	SYNE1	6	152477332	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7639258	152477332	18637735	872	174016											
SYNE1	23345	broad.mit.edu	37	chr6	152590217	152590217	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacagaagcaacttgtctgtCcttctgaaatatgcctctca	6	11	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	152590217	T	T	152590217	1	4	229	0	1	0	0	0	0	0	0	0	15564	870	30	4		4	SYNE1	6	152590217	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	112885	152590217	18524850	873	174017											
SYNE1	23345	broad.mit.edu	37	chr6	152680483	152680483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggatggctctgtatcgttcCtgtagatcctggagttctag	12	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152680483	A	A	152680483	3	1	229	1	0	0	0	0	1	0	0	0	15564	680	24	2	16384	2	SYNE1	6	152680483	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	90266	152680483	18434584	874	174018											
SYNE1	23345	broad.mit.edu	37	chr6	152771883	152771883	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgtcccttactgggtccCgcactgggagtttcacacag	12	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152771883	A	A	152771883	3	1	229	1	0	0	0	0	1	0	0	0	15564	652	23	1	23674	1	SYNE1	6	152771883	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	91400	152771883	18343184	875	174019											
SYNE1	23345	broad.mit.edu	37	chr6	152832734	152832734	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctgtgcatggactgacatGaaaaacaaagggagaagata	11	6	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	152832734	A	A	152832734	1	1	229	0	1	0	0	0	0	0	0	0	15564	1305	45	4		4	SYNE1	6	152832734	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	60851	152832734	18282333	876	174020											
MYCT1	80177	broad.mit.edu	37	chr6	153027361	153027361	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagtcagttggagaaaaTgaaggaaaggctggctgatg	16	3	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	153027361	G	G	153027361	1	3	229	0	1	0	0	0	0	0	0	0	10116	1479	51	5		5	MYCT1	6	153027361	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	194627	153027361	18087706	877	174021											
TIAM2	26230	broad.mit.edu	37	chr6	155565924	155565924	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcacagtttagagtaagtAtctcagatttaggcttaaag	8	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155565924	C	C	155565924	1	2	229	0	1	0	0	0	0	0	0	0	16014	464	16	5		5	TIAM2	6	155565924	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	2538563	155565924	15549143	878	174022											
TFB1M	51106	broad.mit.edu	37	chr6	155579134	155579134	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgagatggagagctggcGgggccgaagagtagggtcta	20	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	155579134	T	T	155579134	3	4	229	1	0	0	0	0	1	0	0	0	15916	1116	39	1	167	1	TFB1M	6	155579134	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	13210	155579134	15535933	879	174023											
TFB1M	51106	broad.mit.edu	37	chr6	155619654	155619654	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgaaaaagccttttcTaccttaaatgtcaagacatc	4	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	155619654	C	C	155619654	2	2	229	1	0	0	0	0	0	0	0	1	15916	1509	53	5		5	TFB1M	6	155619654	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	40520	155619654	15495413	880	174024											
SYNJ2	8871	broad.mit.edu	37	chr6	158483010	158483010	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcccctcaccgccctccCctcctcttttcagaagctgc	5	21	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158483010	A	A	158483010	1	1	229	0	1	0	0	0	0	0	0	0	15572	638	22	2		2	SYNJ2	6	158483010	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2863356	158483010	12632057	881	174025											
SERAC1	84947	broad.mit.edu	37	chr6	158567843	158567843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgggtctccgacatttccCgcacagcctcgagtcgcgtg	12	14	1	0	rs150097653		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	158567843	A	A	158567843	3	1	229	1	0	0	0	0	1	0	0	0	14187	652	23	1	1554	1	SERAC1	6	158567843	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	84833	158567843	12547224	882	174026											
FNDC1	84624	broad.mit.edu	37	chr6	159646576	159646576	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttacagacagtacacCgtgcgctatcgagagaaggg	11	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	159646576	A	A	159646576	2	1	229	1	0	0	0	0	0	0	0	1	6026	639	23	1		1	FNDC1	6	159646576	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1078733	159646576	11468491	883	174027											
PNLDC1	154197	broad.mit.edu	37	chr6	160224193	160224193	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgttatcctgttgtacagCccacatagtatctgtgggcg	11	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	160224193	A	A	160224193	1	1	229	0	1	0	0	0	0	0	0	0	12243	754	26	3		3	PNLDC1	6	160224193	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	577617	160224193	10890874	884	174028											
PLG	5340	broad.mit.edu	37	chr6	161135757	161135757	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtaggattctggtttttActctctattttgcttcatcc	7	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	161135757	G	G	161135757	1	3	229	0	1	0	0	0	0	0	0	0	12181	406	14	5		5	PLG	6	161135757	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	911564	161135757	9979310	885	174029											
PLG	5340	broad.mit.edu	37	chr6	161152298	161152298	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggacatctacacacttGgacgctgggatgaaaagcca	12	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	161152298	T	T	161152298	1	4	229	0	1	0	0	0	0	0	0	0	12181	1363	47	2		2	PLG	6	161152298	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	16541	161152298	9962769	886	174030											
MAP3K4	4216	broad.mit.edu	37	chr6	161510238	161510238	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	taaaaatgactttctgattaGatggttgttggcctggtatc	10	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	161510238	C	C	161510238	1	2	229	0	1	0	0	0	0	0	0	0	9344	957	33	4		4	MAP3K4	6	161510238	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	357940	161510238	9604829	887	174031											
PACRG	135138	broad.mit.edu	37	chr6	163483046	163483046	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatacttcaggtcattagGgggatgggttaaggaagtct	14	5	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	163483046	T	T	163483046	1	4	229	0	1	0	0	0	0	0	0	0	11464	1247	43	2		2	PACRG	6	163483046	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1972808	163483046	7632021	888	174032											
PDCD2	5134	broad.mit.edu	37	chr6	170886768	170886768	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	agtcaatgctcttgcccagtCtgtcagccttcaggtagttt	9	11	5	0	rs140493653	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	170886768	G	G	170886768	3	3	229	1	0	0	0	0	1	0	0	0	11713	913	32	4	124	4	PDCD2	6	170886768	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	7403722	170886768	228299	889	174033											
PRKAR1B	5575	broad.mit.edu	37	chr7	751132	751132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccgaggggcaggcgggcGgggaggccatggcgagggtg	23	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	751132	T	T	751132	3	4	229	1	0	0	0	0	1	0	0	0	12610	1116	39	1	1174	1	PRKAR1B	7	751132	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08		751132	158387531	890	174034											
RBAK	57786	broad.mit.edu	37	chr7	5103959	5103959	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagagaaaccttatgaatGtaatgtatgtgggaaatcct	11	4	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5103959	T	T	5103959	3	4	229	1	0	0	0	0	1	0	0	0	13208	1377	48	3	886	3	RBAK	7	5103959	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4352827	5103959	154034704	891	174035											
THSD7A	221981	broad.mit.edu	37	chr7	11464362	11464362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccctctccacagttctccCgcatattcacaaaggtcacc	5	18	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11464362	A	A	11464362	3	1	229	1	0	0	0	0	1	0	0	0	16002	652	23	1	1681	1	THSD7A	7	11464362	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6360403	11464362	147674301	892	174036											
ETV1	2115	broad.mit.edu	37	chr7	14025799	14025799	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgcacttaaatcttgaagCatcccgtcctgatgaaccca	6	13	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14025799	A	A	14025799	1	1	229	0	1	0	0	0	0	0	0	0	5319	710	25	3		3	ETV1	7	14025799	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2561437	14025799	145112864	893	174037											
TMEM195	392636	broad.mit.edu	37	chr7	15241039	15241039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagtgaatcaatactattGctcaactgaattaaaaatat	5	5	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15241039	T	T	15241039	1	4	229	0	1	0	0	0	0	0	0	0	16240	1334	46	3		3	TMEM195	7	15241039	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1215240	15241039	143897624	894	174038											
AHR	196	broad.mit.edu	37	chr7	17374587	17374587	+	Missense_Mutation	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	atcagtttattcatgcagctGatatgctttattgtgccgag	9	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17374587	A	A	17374587	3	1	229	1	0	0	0	0	1	0	0	0	416	1290	45	4	1015	4	AHR	7	17374587	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2133548	17374587	141764076	895	174039											
SNX13	23161	broad.mit.edu	37	chr7	17836341	17836341	+	3'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctgatatgtattaagccaTcaaaaggtagttgttataat	8	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17836341	A	A	17836341	1	1	229	0	1	0	0	0	0	0	0	0	14998	1450	50	5		5	SNX13	7	17836341	3'UTR	SNP	T	TCGA-91-6836-01A-21D-1855-08	461754	17836341	141302322	896	174040											
HDAC9	9734	broad.mit.edu	37	chr7	18705955	18705955	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgccctctagtggcaacagCactaggagcgacagcagtgc	13	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18705955	A	A	18705955	3	1	229	1	0	0	0	0	1	0	0	0	7081	709	25	3	1629	3	HDAC9	7	18705955	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	869614	18705955	140432708	897	174041											
ABCB5	340273	broad.mit.edu	37	chr7	20691133	20691133	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagagcctgttttgttcGggaccaccatcagtaacaat	9	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20691133	T	T	20691133	3	4	229	1	0	0	0	0	1	0	0	0	44	1116	39	1	1469	1	ABCB5	7	20691133	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1985178	20691133	138447530	898	174042											
ABCB5	340273	broad.mit.edu	37	chr7	20762825	20762825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaacaaagataagcaagaaCttaagcatgctggaaaggta	9	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20762825	A	A	20762825	3	1	229	1	0	0	0	0	1	0	0	0	44	565	20	3	2727	3	ABCB5	7	20762825	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	71692	20762825	138375838	899	174043											
DNAH11	8701	broad.mit.edu	37	chr7	21599449	21599449	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattataaattaaattagcAaagtgtcctgagctgcaatg	7	5	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	21599449	G	G	21599449	1	3	229	0	1	0	0	0	0	0	0	0	4639	145	5	5		5	DNAH11	7	21599449	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	836624	21599449	137539214	900	174044											
DNAH11	8701	broad.mit.edu	37	chr7	21640402	21640402	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaaacaccctggagaccCacacttacctctgggtggat	9	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21640402	A	A	21640402	3	1	229	1	0	0	0	0	1	0	0	0	4639	594	21	2	3171	2	DNAH11	7	21640402	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	40953	21640402	137498261	901	174045											
FAM126A	84668	broad.mit.edu	37	chr7	22999864	22999864	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtttgacttgaagagttacGtatttcttaccatgtctttt	8	6	2	3	rs141187440	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22999864	A	A	22999864	1	1	229	0	1	0	0	0	0	0	0	0	5475	1160	40	4		4	FAM126A	7	22999864	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1359462	22999864	136138799	902	174046											
FAM126A	84668	broad.mit.edu	37	chr7	23000883	23000883	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggatataattctagctGggctctgtatataatatcat	7	7	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23000883	T	T	23000883	3	4	229	1	0	0	0	0	1	0	0	0	5475	1357	47	2	775	2	FAM126A	7	23000883	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1019	23000883	136137780	903	174047											
STK31	56164	broad.mit.edu	37	chr7	23810610	23810610	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtataattctatgtgtGtgatttcatttaggatcaag	9	3	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23810610	T	T	23810610	1	4	229	0	1	0	0	0	0	0	0	0	15414	1392	48	3		3	STK31	7	23810610	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	809727	23810610	135328053	904	174048											
HOXA3	3200	broad.mit.edu	37	chr7	27148287	27148287	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtgtaggccgtgcgcgcGcgcttggacgaagcctgccc	15	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27148287	T	T	27148287	2	4	229	1	0	0	0	0	0	0	0	1	7360	1074	38	3		3	HOXA3	7	27148287	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3337677	27148287	131990376	905	174049											
HOXA7	3204	broad.mit.edu	37	chr7	27194526	27194526	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagggccccggatcggccCctcattcctcctcgtcttcc	10	18	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27194526	A	A	27194526	1	1	229	0	1	0	0	0	0	0	0	0	7364	638	22	2		2	HOXA7	7	27194526	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	46239	27194526	131944137	906	174050											
CHN2	1124	broad.mit.edu	37	chr7	29548801	29548801	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaacagtgcttggattgCatgaatttattagaatcctt	9	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29548801	G	G	29548801	1	3	229	0	1	0	0	0	0	0	0	0	3394	725	25	4		4	CHN2	7	29548801	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2354275	29548801	129589862	907	174051											
NOD1	10392	broad.mit.edu	37	chr7	30491930	30491930	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcggtcctgcagggccCgctcggggaacatcctcctg	15	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30491930	A	A	30491930	3	1	229	1	0	0	0	0	1	0	0	0	10611	652	23	1	1794	1	NOD1	7	30491930	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	943129	30491930	128646733	908	174052											
C7orf16	10842	broad.mit.edu	37	chr7	31736867	31736867	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtgctctggggagaagCcacactcagtgctacctttt	11	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31736867	T	T	31736867	1	4	229	0	1	0	0	0	0	0	0	0	2403	754	26	4		4	C7orf16	7	31736867	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1244937	31736867	127401796	909	174053											
AVL9	23080	broad.mit.edu	37	chr7	32598970	32598970	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cccctcagagagtcttccaaTtactgtacaacctcaagcta	5	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32598970	A	A	32598970	3	1	229	1	0	0	0	0	1	0	0	0	1233	1493	52	5	1147	5	AVL9	7	32598970	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	862103	32598970	126539693	910	174054											
BMPER	168667	broad.mit.edu	37	chr7	33945373	33945373	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaggtaggggagggggcGggagggaccggccctccggg	23	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33945373	T	T	33945373	1	4	229	0	1	0	0	0	0	0	0	0	1474	1131	39	1		1	BMPER	7	33945373	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1346403	33945373	125193290	911	174055											
VPS41	27072	broad.mit.edu	37	chr7	38835001	38835001	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	agccaatcaagactcacagtCctttggaccaccctcagtgg	8	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38835001	T	T	38835001	1	4	229	0	1	0	0	0	0	0	0	0	17337	870	30	4		4	VPS41	7	38835001	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4889628	38835001	120303662	912	174056											
CDK13	8621	broad.mit.edu	37	chr7	40102462	40102462	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaattactttatggtacCgtccacctgaactgctactg	8	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40102462	A	A	40102462	3	1	229	1	0	0	0	0	1	0	0	0	3159	652	23	1	2668	1	CDK13	7	40102462	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1267461	40102462	119036201	913	174057											
INHBA	3624	broad.mit.edu	37	chr7	41729272	41729272	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcacccacactcctccacGatcatgttctgaatgtcctt	6	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41729272	T	T	41729272	2	4	229	1	0	0	0	0	0	0	0	1	7811	1048	37	3		3	INHBA	7	41729272	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1626810	41729272	117409391	914	174058											
C7orf25	79020	broad.mit.edu	37	chr7	42971888	42971888	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgctccaagagcatgcGgggtgttgtagttctaagaa	14	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42971888	T	T	42971888	1	4	229	0	1	0	0	0	0	0	0	0	2405	1131	39	1		1	C7orf25	7	42971888	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	1242616	42971888	116166775	915	174059											
URGCP	55665	broad.mit.edu	37	chr7	43958576	43958576	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagaacatctacctgtcGgagcatgggggaagagctgg	15	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43958576	T	T	43958576	1	4	229	0	1	0	0	0	0	0	0	0	17152	1131	39	1		1	URGCP	7	43958576	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	986688	43958576	115180087	916	174060											
AEBP1	165	broad.mit.edu	37	chr7	44152583	44152583	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgggtctgtatctgtcccCggccagctatcaatgacttc	9	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44152583	A	A	44152583	1	1	229	0	1	0	0	0	0	0	0	0	349	667	23	1		1	AEBP1	7	44152583	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	194007	44152583	114986080	917	174061											
ZMIZ2	83637	broad.mit.edu	37	chr7	44807180	44807180	+	Silent	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcccacccgacctccctacGaacaacaatgacgacctgct	7	18	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44807180	A	A	44807180	2	1	229	1	0	0	0	0	0	0	0	1	17823	1045	37	4		4	ZMIZ2	7	44807180	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	654597	44807180	114331483	918	174062											
SEPT14	346288	broad.mit.edu	37	chr7	55878792	55878792	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgtttcagcagatgtcaGgggtgtttgaatagctcccg	13	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55878792	T	T	55878792	1	4	229	0	1	0	0	0	0	0	0	0	14176	1015	35	2		2	SEPT14	7	55878792	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	11071612	55878792	103259871	919	174063											
ZNF713	349075	broad.mit.edu	37	chr7	56006625	56006625	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aatttctttttcaaatcataGataacatgagaatattggaa	5	4	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56006625	C	C	56006625	1	2	229	0	1	0	0	0	0	0	0	0	18245	957	33	4		4	ZNF713	7	56006625	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	127833	56006625	103132038	920	174064											
ZNF713	349075	broad.mit.edu	37	chr7	56007028	56007028	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	acagcatcaaacataattcaGacttgatttactatcaggga	6	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56007028	T	T	56007028	3	4	229	1	0	0	0	0	1	0	0	0	18245	942	33	3	636	3	ZNF713	7	56007028	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	403	56007028	103131635	921	174065											
WBSCR17	64409	broad.mit.edu	37	chr7	71036284	71036284	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaggaccccagccatgaTaggctgctcgttcgtggtca	11	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	71036284	C	C	71036284	3	2	229	1	0	0	0	0	1	0	0	0	17391	1406	49	5	999	5	WBSCR17	7	71036284	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	15029256	71036284	88102379	922	174066											
NSUN5	55695	broad.mit.edu	37	chr7	72717382	72717382	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggacaggcatcttcctttccCaccaggaaggagtcagcccg	11	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72717382	A	A	72717382	1	1	229	0	1	0	0	0	0	0	0	0	10776	609	21	2		2	NSUN5	7	72717382	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	1681098	72717382	86421281	923	174067											
TRIM50	135892	broad.mit.edu	37	chr7	72733986	72733986	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaactgggttgaattcccCtgagaggatttgcgctttcc	11	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72733986	A	A	72733986	1	1	229	0	1	0	0	0	0	0	0	0	16651	696	24	2		2	TRIM50	7	72733986	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	16604	72733986	86404677	924	174068											
TBL2	26608	broad.mit.edu	37	chr7	72987710	72987710	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttttagggaagtcctctgGggtggctgtgaaggtgtagc	16	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72987710	T	T	72987710	3	4	229	1	0	0	0	0	1	0	0	0	15764	1232	43	2	821	2	TBL2	7	72987710	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	253724	72987710	86150953	925	174069											
CLDN4	1364	broad.mit.edu	37	chr7	73245979	73245979	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tcatccaagacttctacaatCcgctggtggcctccgggcag	10	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73245979	T	T	73245979	3	4	229	1	0	0	0	0	1	0	0	0	3519	855	30	4	450	4	CLDN4	7	73245979	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	258269	73245979	85892684	926	174070											
LAT2	7462	broad.mit.edu	37	chr7	73637988	73637988	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggaaggcaggacagagcGggaggatgagccaggctttg	19	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73637988	T	T	73637988	1	4	229	0	1	0	0	0	0	0	0	0	8717	1131	39	1		1	LAT2	7	73637988	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	392009	73637988	85500675	927	174071											
WBSCR16	81554	broad.mit.edu	37	chr7	74470047	74470047	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgagtccacatcggatgcGggaaacctggatttctgggt	14	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74470047	T	T	74470047	3	4	229	1	0	0	0	0	1	0	0	0	17390	1116	39	1	214	1	WBSCR16	7	74470047	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	832059	74470047	84668616	928	174072											
HIP1	3092	broad.mit.edu	37	chr7	75172241	75172241	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcctggttcactcccCgagaggcctgctgcagctgg	14	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75172241	A	A	75172241	3	1	229	1	0	0	0	0	1	0	0	0	7181	652	23	1	310	1	HIP1	7	75172241	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	702194	75172241	83966422	929	174073											
HIP1	3092	broad.mit.edu	37	chr7	75189008	75189008	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcgcctgcccccggggCccgcccccgcccccacccac	10	28	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75189008	A	A	75189008	1	1	229	0	1	0	0	0	0	0	0	0	7181	754	26	3		3	HIP1	7	75189008	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	16767	75189008	83949655	930	174074											
POMZP3	22932	broad.mit.edu	37	chr7	76254804	76254804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccataggagtccaagcGggaaactggcttagtactct	10	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76254804	T	T	76254804	1	4	229	0	1	0	0	0	0	0	0	0	12342	1131	39	1		1	POMZP3	7	76254804	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1065796	76254804	82883859	931	174075											
CCDC146	57639	broad.mit.edu	37	chr7	76889647	76889647	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactttggtgttgagttaaTaaatatttaaaaataatttt	5	2	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	76889647	C	C	76889647	1	2	229	0	1	0	0	0	0	0	0	0	2806	1421	49	5		5	CCDC146	7	76889647	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	634843	76889647	82249016	932	174076											
PCLO	27445	broad.mit.edu	37	chr7	82390669	82390669	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgattataatagaattAgatacctggtagatgatcag	9	3	1	6			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82390669	T	T	82390669	1	4	229	0	1	0	0	0	0	0	0	0	11677	435	15	5		5	PCLO	7	82390669	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	5501022	82390669	76747994	933	174077											
PCLO	27445	broad.mit.edu	37	chr7	82545466	82545466	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taactgataagaaggctgtgGggttggtgtaggttgaactt	15	3	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	82545466	T	T	82545466	3	4	229	1	0	0	0	0	1	0	0	0	11677	1232	43	2	3685	2	PCLO	7	82545466	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	154797	82545466	76593197	934	174078											
CROT	54677	broad.mit.edu	37	chr7	87027876	87027876	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcctggaaatcctgtccCgagactgatgcggaaaagct	11	11	1	2	rs144430034		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87027876	A	A	87027876	2	1	229	1	0	0	0	0	0	0	0	1	3926	639	23	1		1	CROT	7	87027876	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	4482410	87027876	72110787	935	174079											
ABCB1	5243	broad.mit.edu	37	chr7	87179321	87179321	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccacaccaatgatttccCgtagaaaccttacatttatg	4	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87179321	A	A	87179321	3	1	229	1	0	0	0	0	1	0	0	0	40	652	23	1	2506	1	ABCB1	7	87179321	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	151445	87179321	71959342	936	174080											
ABCB1	5243	broad.mit.edu	37	chr7	87190446	87190446	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tccaaaatattagttatgctGtaatacatccattaagctat	4	7	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	87190446	C	C	87190446	1	2	229	0	1	0	0	0	0	0	0	0	40	1392	48	4		4	ABCB1	7	87190446	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	11125	87190446	71948217	937	174081											
AKAP9	10142	broad.mit.edu	37	chr7	91714100	91714100	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gactggggtttgatttttttTtttttaacagcaaattattt	7	3	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	91714100	G	G	91714100	1	3	229	0	1	0	0	0	0	0	0	0	459	1856	64	5		5	AKAP9	7	91714100	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	4523654	91714100	67424563	938	174082											
AKAP9	10142	broad.mit.edu	37	chr7	91729041	91729041	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttcttgtggctcattgaCtgaaagactactgagacaaa	8	8	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91729041	T	T	91729041	3	4	229	1	0	0	0	0	1	0	0	0	459	565	20	4	10928	4	AKAP9	7	91729041	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	14941	91729041	67409622	939	174083											
SAMD9L	219285	broad.mit.edu	37	chr7	92763843	92763843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagagtagaaatcttctccCacatgttagttgtcttgtct	7	8	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92763843	A	A	92763843	3	1	229	1	0	0	0	0	1	0	0	0	13938	595	21	2	3316	2	SAMD9L	7	92763843	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1034802	92763843	66374820	940	174084											
CCDC132	55610	broad.mit.edu	37	chr7	92905527	92905527	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acccaagccattcacaacacCgtgtttcaagttgttcttgg	7	12	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92905527	A	A	92905527	2	1	229	1	0	0	0	0	0	0	0	1	2793	639	23	1		1	CCDC132	7	92905527	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	141684	92905527	66233136	941	174085											
COL1A2	1278	broad.mit.edu	37	chr7	94034181	94034181	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctcgtggtccagctggcCctcctggcaaggctggtgaa	15	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94034181	A	A	94034181	3	1	229	1	0	0	0	0	1	0	0	0	3710	623	22	2	443	2	COL1A2	7	94034181	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1128654	94034181	65104482	942	174086											
LMTK2	22853	broad.mit.edu	37	chr7	97823728	97823728	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggacgagaccgagcacccCgtgcccatcatcctcagcaa	10	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97823728	A	A	97823728	2	1	229	1	0	0	0	0	0	0	0	1	8933	639	23	1		1	LMTK2	7	97823728	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3789547	97823728	61314935	943	174087											
NPTX2	4885	broad.mit.edu	37	chr7	98254284	98254284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggtgtccctcccactcCgcacaaactacctatacggc	6	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	98254284	A	A	98254284	3	1	229	1	0	0	0	0	1	0	0	0	10698	652	23	1	704	1	NPTX2	7	98254284	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	430556	98254284	60884379	944	174088											
TRRAP	8295	broad.mit.edu	37	chr7	98508155	98508155	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagttcattcccaacaaGcagttacaacccaaagagac	6	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98508155	T	T	98508155	3	4	229	1	0	0	0	0	1	0	0	0	16726	962	34	3	1795	3	TRRAP	7	98508155	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	253871	98508155	60630508	945	174089											
TRRAP	8295	broad.mit.edu	37	chr7	98596666	98596666	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccagctccaaggtggatGggaggagaaggcagccatga	15	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	98596666	T	T	98596666	1	4	229	0	1	0	0	0	0	0	0	0	16726	1363	47	2		2	TRRAP	7	98596666	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	88511	98596666	60541997	946	174090											
ZSCAN21	7589	broad.mit.edu	37	chr7	99654933	99654933	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctgccccaggagctcCaggcctgggtgcaggagcat	13	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99654933	A	A	99654933	3	1	229	1	0	0	0	0	1	0	0	0	18362	595	21	2	306	2	ZSCAN21	7	99654933	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1058267	99654933	59483730	947	174091											
ZNF3	7551	broad.mit.edu	37	chr7	99672813	99672813	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acatctctatagaggtccctCtgagcaggttccaaacgctt	8	12	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99672813	A	A	99672813	3	1	229	1	0	0	0	0	1	0	0	0	17955	912	32	3	1261	3	ZNF3	7	99672813	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	17880	99672813	59465850	948	174092											
MCM7	4176	broad.mit.edu	37	chr7	99695276	99695276	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagactggtccacaccccCgactagcaggagcagcagtg	13	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99695276	A	A	99695276	3	1	229	1	0	0	0	0	1	0	0	0	9485	652	23	1	1109	1	MCM7	7	99695276	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	22463	99695276	59443387	949	174093											
C7orf43	55262	broad.mit.edu	37	chr7	99755171	99755171	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcctcttctcagagccCattagccactttccagtgtg	6	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99755171	A	A	99755171	1	1	229	0	1	0	0	0	0	0	0	0	2418	609	21	2		2	C7orf43	7	99755171	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	59895	99755171	59383492	950	174094											
SPDYE3	441272	broad.mit.edu	37	chr7	99913279	99913280	+	Intron	DNP	CC	AA	AA													tgaaagtcattctcccctctCccatccacctcacccgcggc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	99913280	AA	AA	99913279	1	1	229	0	1	0	0	0	0	0	0	0	15148	870	30	3		3	SPDYE3	7	99913279	Intron	DNP	CC	TCGA-91-6836-01A-21D-1855-08	158108	99913279	59225384	951	174095											
PILRA	29992	broad.mit.edu	37	chr7	99972073	99972073	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggtgagtccagctgcccTggcacccgctttgcccaccg	12	17	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	99972073	C	C	99972073	1	2	229	0	1	0	0	0	0	0	0	0	12020	1595	55	5		5	PILRA	7	99972073	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	58794	99972073	59166590	952	174096											
C7orf51	222950	broad.mit.edu	37	chr7	100087213	100087213	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaagaagaggaggtgggCgccgcgacatttggggcagg	21	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100087213	A	A	100087213	2	1	229	1	0	0	0	0	0	0	0	1	2425	755	27	3		3	C7orf51	7	100087213	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	115140	100087213	59051450	953	174097											
LRCH4	4034	broad.mit.edu	37	chr7	100179882	100179882	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgggtgggtcactcagtAgtacttgagactgagaagca	13	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100179882	T	T	100179882	1	4	229	0	1	0	0	0	0	0	0	0	9022	435	15	5		5	LRCH4	7	100179882	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	92669	100179882	58958781	954	174098											
SLC12A9	56996	broad.mit.edu	37	chr7	100454798	100454798	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgaaggacaacttgggcGgtgagctgggtgctgccgtg	17	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100454798	T	T	100454798	3	4	229	1	0	0	0	0	1	0	0	0	14503	1130	39	1	771	1	SLC12A9	7	100454798	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	274916	100454798	58683865	955	174099											
RABL5	64792	broad.mit.edu	37	chr7	100961446	100961446	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catagctcgaattcacagccCgtgcctttgttgttgctggt	10	11	1	0	rs149034136	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100961446	A	A	100961446	2	1	229	1	0	0	0	0	0	0	0	1	13081	639	23	1		1	RABL5	7	100961446	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	506648	100961446	58177217	956	174100											
CUX1	1523	broad.mit.edu	37	chr7	101844717	101844717	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccatcctgcagcaagccCgccgggagatggaggcccag	14	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101844717	A	A	101844717	3	1	229	1	0	0	0	0	1	0	0	0	4097	652	23	1	2277	1	CUX1	7	101844717	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	883271	101844717	57293946	957	174101											
LHFPL3	375612	broad.mit.edu	37	chr7	104308387	104308387	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgatgacgatgtgtacagGgcgcctccaattgaccgttc	11	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104308387	T	T	104308387	1	4	229	0	1	0	0	0	0	0	0	0	8838	1247	43	2		2	LHFPL3	7	104308387	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2463670	104308387	54830276	958	174102											
RINT1	60561	broad.mit.edu	37	chr7	105173352	105173352	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccttagctttttcttccCgcccaaactcagccttccag	4	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105173352	A	A	105173352	1	1	229	0	1	0	0	0	0	0	0	0	13487	667	23	1		1	RINT1	7	105173352	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	864965	105173352	53965311	959	174103											
ATXN7L1	222255	broad.mit.edu	37	chr7	105516298	105516298	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctccctgctttttccaccCtcttttccagcctcttctaa	2	18	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105516298	A	A	105516298	3	1	229	1	0	0	0	0	1	0	0	0	1220	680	24	2	2512	2	ATXN7L1	7	105516298	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	342946	105516298	53622365	960	174104											
PIK3CG	5294	broad.mit.edu	37	chr7	106509119	106509119	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagaggcattgatatcccCgtcctgcctcggaacaccga	9	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106509119	A	A	106509119	2	1	229	1	0	0	0	0	0	0	0	1	12011	639	23	1		1	PIK3CG	7	106509119	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	992821	106509119	52629544	961	174105											
HBP1	26959	broad.mit.edu	37	chr7	106840769	106840769	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtttcaataaatagtgttTaaaattatcttgccttatcc	4	6	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	106840769	A	A	106840769	1	1	229	0	1	0	0	0	0	0	0	0	7051	1769	61	5		5	HBP1	7	106840769	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	331650	106840769	52297894	962	174106											
NRCAM	4897	broad.mit.edu	37	chr7	107866055	107866055	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactaaattctacaatgaaGgagagaatatcagttacaat	7	5	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107866055	T	T	107866055	1	4	229	0	1	0	0	0	0	0	0	0	10739	1015	35	2		2	NRCAM	7	107866055	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1025286	107866055	51272608	963	174107											
IFRD1	3475	broad.mit.edu	37	chr7	112112722	112112722	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgatctaagtttatctgtGggttccacataacttctgtt	8	7	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	112112722	C	C	112112722	1	2	229	0	1	0	0	0	0	0	0	0	7623	1363	47	4		4	IFRD1	7	112112722	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4246667	112112722	47025941	964	174108											
CFTR	1080	broad.mit.edu	37	chr7	117246826	117246826	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtatgtaaaaataagtacCgttaagtatgtctgtattat	8	3	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117246826	A	A	117246826	1	1	229	0	1	0	0	0	0	0	0	0	3324	667	23	1		1	CFTR	7	117246826	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5134104	117246826	41891837	965	174109											
PTPRZ1	5803	broad.mit.edu	37	chr7	121678889	121678889	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttctggagaatgatatgGgaacataatgtggaagttat	12	2	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	121678889	T	T	121678889	3	4	229	1	0	0	0	0	1	0	0	0	12922	1241	43	2	5522	2	PTPRZ1	7	121678889	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4432063	121678889	37459774	966	174110											
RNF133	168433	broad.mit.edu	37	chr7	122338805	122338805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagactccagtctctccCaactctgacaacacatgatt	4	15	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122338805	A	A	122338805	3	1	229	1	0	0	0	0	1	0	0	0	13550	593	21	2	966	2	RNF133	7	122338805	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	659916	122338805	36799858	967	174111											
SPAM1	6677	broad.mit.edu	37	chr7	123593677	123593677	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaagctttgttaaatcaaGtggagtatcccagatagttt	9	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	123593677	C	C	123593677	3	2	229	1	0	0	0	0	1	0	0	0	15102	1029	36	4	55	4	SPAM1	7	123593677	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1254872	123593677	35544986	968	174112											
FSCN3	29999	broad.mit.edu	37	chr7	127235911	127235911	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcactgtgtgatggagaagGaggcatgttatatccacagg	15	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127235911	T	T	127235911	3	4	229	1	0	0	0	0	1	0	0	0	6129	1174	41	3	701	3	FSCN3	7	127235911	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3642234	127235911	31902752	969	174113											
PAX4	5078	broad.mit.edu	37	chr7	127255045	127255045	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcaattcgagccaccacAgggggtgtagccagccgtgg	16	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127255045	T	T	127255045	2	4	229	1	0	0	0	0	0	0	0	1	11575	175	7	5		5	PAX4	7	127255045	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	19134	127255045	31883618	970	174114											
IMPDH1	3614	broad.mit.edu	37	chr7	128040030	128040030	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctggcctgcctgaggttattCgaaccttccccagggctcag	11	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128040030	A	A	128040030	1	1	229	0	1	0	0	0	0	0	0	0	7796	899	31	3		3	IMPDH1	7	128040030	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	784985	128040030	31098633	971	174115											
PLXNA4	91584	broad.mit.edu	37	chr7	131831513	131831513	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggccacacagccttagccCatcacttaccatgcatccct	6	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	131831513	G	G	131831513	1	3	229	0	1	0	0	0	0	0	0	0	12217	609	21	4		4	PLXNA4	7	131831513	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3791483	131831513	27307150	972	174116											
PLXNA4	91584	broad.mit.edu	37	chr7	131853280	131853280	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttgttgttgatgagctGggcgaagagcttcaggcctt	13	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131853280	T	T	131853280	3	4	229	1	0	0	0	0	1	0	0	0	12217	1357	47	2	1659	2	PLXNA4	7	131853280	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	21767	131853280	27285383	973	174117											
SLC13A4	26266	broad.mit.edu	37	chr7	135375853	135375853	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaggaggcggaggttgcAgtgagctgagattgtgccac	16	9	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	135375853	G	G	135375853	1	3	229	0	1	0	0	0	0	0	0	0	14507	203	7	5		5	SLC13A4	7	135375853	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	3522573	135375853	23762810	974	174118											
CHRM2	1129	broad.mit.edu	37	chr7	136700132	136700132	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgagaactgtggaggatGgggagtgctacattcagttt	17	4	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700132	T	T	136700132	3	4	229	1	0	0	0	0	1	0	0	0	3408	1348	47	2	522	2	CHRM2	7	136700132	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1324279	136700132	22438531	975	174119											
CHRM2	1129	broad.mit.edu	37	chr7	136700754	136700754	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagcctcctccttcccGggaaaagaaagtcaccagga	9	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136700754	T	T	136700754	3	4	229	1	0	0	0	0	1	0	0	0	3408	1116	39	1	1144	1	CHRM2	7	136700754	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	622	136700754	22437909	976	174120											
PTN	5764	broad.mit.edu	37	chr7	136912820	136912820	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ctttttcttcttcttagattCtgctgtgattacaaaaaaga	5	7	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136912820	T	T	136912820	3	4	229	1	0	0	0	0	1	0	0	0	12874	922	32	4	56	4	PTN	7	136912820	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	212066	136912820	22225843	977	174121											
DGKI	9162	broad.mit.edu	37	chr7	137304500	137304500	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aacccaaagactagtctgggGagaaaagcacgaagcagcag	12	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	137304500	T	T	137304500	1	4	229	0	1	0	0	0	0	0	0	0	4511	1189	41	3		3	DGKI	7	137304500	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	391680	137304500	21834163	978	174122											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138432380	138432380	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccacctcagattccctgcCacagctccacgatttgcatg	6	18	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138432380	A	A	138432380	1	1	229	0	1	0	0	0	0	0	0	0	1174	609	21	2		2	ATP6V0A4	7	138432380	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1127880	138432380	20706283	979	174123											
TBXAS1	6916	broad.mit.edu	37	chr7	139572283	139572283	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccaacatggtgaaaccccGtctctactaaatacaaaaaa	5	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139572283	T	T	139572283	1	4	229	0	1	0	0	0	0	0	0	0	15786	1160	40	3		3	TBXAS1	7	139572283	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1139903	139572283	19566380	980	174124											
DENND2A	27147	broad.mit.edu	37	chr7	140269489	140269489	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggacagcctcttcaccCgtttctttcctctccggacc	7	17	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140269489	A	A	140269489	3	1	229	1	0	0	0	0	1	0	0	0	4469	652	23	1	1589	1	DENND2A	7	140269489	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	697206	140269489	18869174	981	174125											
MGAM	8972	broad.mit.edu	37	chr7	141786544	141786544	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtctttgtaaatttgggtgGagtcagggtttctaggaagg	16	3	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141786544	T	T	141786544	1	4	229	0	1	0	0	0	0	0	0	0	9634	1189	41	3		3	MGAM	7	141786544	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1517055	141786544	17352119	982	174126											
TRYX3	136541	broad.mit.edu	37	chr7	141955123	141955123	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaacccccaatatcaccCgaagctttctggaacaatat	5	12	2	0	rs138718517		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	141955123	A	A	141955123	3	1	229	1	0	0	0	0	1	0	0	0	16729	652	23	1	549	1	TRYX3	7	141955123	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	168579	141955123	17183540	983	174127											
EPHB6	2051	broad.mit.edu	37	chr7	142562413	142562413	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcccccccaggctgcaCtgcaacggggagggcaagtg	16	14	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	142562413	G	G	142562413	3	3	229	1	0	0	0	0	1	0	0	0	5220	564	20	4	865	4	EPHB6	7	142562413	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	607290	142562413	16576250	984	174128											
EPHB6	2051	broad.mit.edu	37	chr7	142564649	142564649	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcagggagtgagtggcTgttacccccaggcagaagac	15	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	142564649	C	C	142564649	1	2	229	0	1	0	0	0	0	0	0	0	5220	1595	55	5		5	EPHB6	7	142564649	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2236	142564649	16574014	985	174129											
OR9A2	135924	broad.mit.edu	37	chr7	142723406	142723406	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttaacacagaaaccaacaGggaaactatcttattgtact	7	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	142723406	T	T	142723406	3	4	229	1	0	0	0	0	1	0	0	0	11342	991	35	2	122	2	OR9A2	7	142723406	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	158757	142723406	16415257	986	174130											
EPHA1	2041	broad.mit.edu	37	chr7	143092362	143092362	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacttccagtggtttcaccCctctttcctgcatttcccgc	5	18	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143092362	A	A	143092362	1	1	229	0	1	0	0	0	0	0	0	0	5207	638	22	2		2	EPHA1	7	143092362	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	368956	143092362	16046301	987	174131											
OR2A2	442361	broad.mit.edu	37	chr7	143807187	143807187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcccttctgtgggccccGggatgtgaaccacctcttct	11	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	143807187	T	T	143807187	3	4	229	1	0	0	0	0	1	0	0	0	11071	1116	39	1	514	1	OR2A2	7	143807187	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	714825	143807187	15331476	988	174132											
OR2A14	135941	broad.mit.edu	37	chr7	143826632	143826632	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggagagtgtgcactgtcCtggctgtggcttcctgggtg	17	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143826632	A	A	143826632	3	1	229	1	0	0	0	0	1	0	0	0	11070	680	24	2	429	2	OR2A14	7	143826632	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	19445	143826632	15312031	989	174133											
TPK1	27010	broad.mit.edu	37	chr7	144345758	144345758	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccattttgaatgtatgtTacaattgctaaaataaaaaa	4	4	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	144345758	C	C	144345758	1	2	229	0	1	0	0	0	0	0	0	0	16528	1769	61	5		5	TPK1	7	144345758	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	519126	144345758	14792905	990	174134											
CNTNAP2	26047	broad.mit.edu	37	chr7	146829627	146829627	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaacctatttgacatttgTtcctgaaacttattgcaatt	5	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146829627	A	A	146829627	1	1	229	0	1	0	0	0	0	0	0	0	3679	1740	60	5		5	CNTNAP2	7	146829627	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2483869	146829627	12309036	991	174135											
CNTNAP2	26047	broad.mit.edu	37	chr7	146997282	146997282	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttcgcttcctagccaaGgaaaattttgctattctcac	8	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146997282	T	T	146997282	3	4	229	1	0	0	0	0	1	0	0	0	3679	991	35	2	1432	2	CNTNAP2	7	146997282	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	167655	146997282	12141381	992	174136											
EZH2	2146	broad.mit.edu	37	chr7	148511172	148511172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggacagccaggtagcacGggcactgcttggtgttgcac	14	12	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	148511172	T	T	148511172	3	4	229	1	0	0	0	0	1	0	0	0	5377	1116	39	1	549	1	EZH2	7	148511172	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1513890	148511172	10627491	993	174137											
PDIA4	9601	broad.mit.edu	37	chr7	148711878	148711878	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggagcctcaatcctggcCtacaactcgtgcccaccttg	8	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148711878	A	A	148711878	1	1	229	0	1	0	0	0	0	0	0	0	11764	696	24	2		2	PDIA4	7	148711878	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	200706	148711878	10426785	994	174138											
ZNF786	136051	broad.mit.edu	37	chr7	148767723	148767723	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcatgtgtcccctttccCggaagttcttgtcacactca	7	14	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	148767723	A	A	148767723	3	1	229	1	0	0	0	0	1	0	0	0	18287	652	23	1	211	1	ZNF786	7	148767723	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	55845	148767723	10370940	995	174139											
ZNF777	27153	broad.mit.edu	37	chr7	149152656	149152656	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccgggctctggagcagcGggtccatgtcagtctcggga	15	11	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149152656	T	T	149152656	3	4	229	1	0	0	0	0	1	0	0	0	18279	1116	39	1	2057	1	ZNF777	7	149152656	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	384933	149152656	9986007	996	174140											
ZNF746	155061	broad.mit.edu	37	chr7	149191248	149191248	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctcacccacacgctcacGggtttggccgcttgggctcc	11	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	149191248	T	T	149191248	1	4	229	0	1	0	0	0	0	0	0	0	18258	1131	39	1		1	ZNF746	7	149191248	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	38592	149191248	9947415	997	174141											
ZNF467	168544	broad.mit.edu	37	chr7	149463300	149463300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgatcttcgtcctccacCttcaccttccgaatcatcca	3	18	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149463300	A	A	149463300	3	1	229	1	0	0	0	0	1	0	0	0	18054	680	24	2	1500	2	ZNF467	7	149463300	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	272052	149463300	9675363	998	174142											
SSPO	23145	broad.mit.edu	37	chr7	149509629	149509629	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccccacacagttctcagCccatcctgtttgccctcagt	7	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	149509629	A	A	149509629	1	1	229	0	1	0	0	0	0	0	0	0	15307	754	26	3		3	SSPO	7	149509629	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	46329	149509629	9629034	999	174143											
GIMAP1	170575	broad.mit.edu	37	chr7	150417567	150417567	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaaggaggacctggccGggggctccctgcacgattac	15	13	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150417567	T	T	150417567	3	4	229	1	0	0	0	0	1	0	0	0	6443	1116	39	1	481	1	GIMAP1	7	150417567	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	907938	150417567	8721096	1000	174144											
GIMAP5	55340	broad.mit.edu	37	chr7	150439681	150439681	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtcatcctcttcaccCacaaagaggacttagggggc	11	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150439681	A	A	150439681	3	1	229	1	0	0	0	0	1	0	0	0	6446	594	21	2	460	2	GIMAP5	7	150439681	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	22114	150439681	8698982	1001	174145											
ABCF2	10061	broad.mit.edu	37	chr7	150923298	150923298	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcatgacaccagatacatTctccactacccccagcatca	4	16	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	150923298	C	C	150923298	1	2	229	0	1	0	0	0	0	0	0	0	66	1798	62	5		5	ABCF2	7	150923298	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	483617	150923298	8215365	1002	174146											
PRKAG2	51422	broad.mit.edu	37	chr7	151372757	151372757	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	accaaggacggtcagaggtcCggcttccaggaagggacgtc	15	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151372757	T	T	151372757	1	4	229	0	1	0	0	0	0	0	0	0	12607	667	23	4		4	PRKAG2	7	151372757	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	449459	151372757	7765906	1003	174147											
MLL3	58508	broad.mit.edu	37	chr7	151944945	151944945	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctgattttatagaattGttccaatatcttttctgtca	4	8	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151944945	T	T	151944945	1	4	229	0	1	0	0	0	0	0	0	0	9715	1392	48	3		3	MLL3	7	151944945	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	572188	151944945	7193718	1004	174148											
MLL3	58508	broad.mit.edu	37	chr7	151945117	151945117	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggaactaagagctgaaGggtaattatgcagcatgtca	12	6	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	151945117	T	T	151945117	3	4	229	1	0	0	0	0	1	0	0	0	9715	1000	35	2	12517	2	MLL3	7	151945117	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	172	151945117	7193546	1005	174149											
PTPRN2	5799	broad.mit.edu	37	chr7	157931164	157931164	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggcccctcacctcagcCggctgcctctgcaggtcctt	9	19	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	157931164	A	A	157931164	2	1	229	1	0	0	0	0	0	0	0	1	12916	639	23	1		1	PTPRN2	7	157931164	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	5986047	157931164	1207499	1006	174150											
DLGAP2	9228	broad.mit.edu	37	chr8	1497409	1497409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ccaaggcggacggccgggcgGacgaccaccaccacgcccac	13	19	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1497409	T	T	1497409	3	4	229	1	0	0	0	0	1	0	0	0	4600	1174	41	3	552	3	DLGAP2	8	1497409	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08		1497409	144866613	1007	174151											
CSMD1	64478	broad.mit.edu	37	chr8	2813189	2813189	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agatccccctgcgaggaaaaAgcctggatggcaggtgtaca	13	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2813189	G	G	2813189	3	3	229	1	0	0	0	0	1	0	0	0	3978	72	3	5	806	5	CSMD1	8	2813189	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	1315780	2813189	143550833	1008	174152											
SPAG11B	10407	broad.mit.edu	37	chr8	7320418	7320418	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	acacgtctgaggatgctctgAggcctccgcctggcagaccc	12	15	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7320418	T	T	7320418	1	4	229	0	1	0	0	0	0	0	0	0	15093	319	11	5		5	SPAG11B	8	7320418	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	4507229	7320418	139043604	1009	174153											
PSD3	23362	broad.mit.edu	37	chr8	18541402	18541402	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaacctgaggtcctcaccCgtaccttgctggcactctgg	11	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18541402	A	A	18541402	1	1	229	0	1	0	0	0	0	0	0	0	12754	667	23	1		1	PSD3	8	18541402	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11220984	18541402	127822620	1010	174154											
KIF13B	23303	broad.mit.edu	37	chr8	29046016	29046016	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttgtttatgtgatttcaTgttatttaacattaccagtc	7	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	29046016	C	C	29046016	1	2	229	0	1	0	0	0	0	0	0	0	8345	1479	51	5		5	KIF13B	8	29046016	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	10504614	29046016	117318006	1011	174155											
UNC5D	137970	broad.mit.edu	37	chr8	35542045	35542045	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggcttgcacatagtaggCaatcagtaaaaacctctctc	8	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35542045	A	A	35542045	1	1	229	0	1	0	0	0	0	0	0	0	17121	725	25	3		3	UNC5D	8	35542045	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	6496029	35542045	110821977	1012	174156											
ERLIN2	11160	broad.mit.edu	37	chr8	37601926	37601926	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggtgaacttcctggtccCgaacgcaggtacgtcttaac	11	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37601926	A	A	37601926	3	1	229	1	0	0	0	0	1	0	0	0	5275	652	23	1	304	1	ERLIN2	8	37601926	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2059881	37601926	108762096	1013	174157											
DDHD2	23259	broad.mit.edu	37	chr8	38109804	38109804	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttcaatatttatcaccCtgtaagcattgtacagctat	4	9	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38109804	A	A	38109804	3	1	229	1	0	0	0	0	1	0	0	0	4360	695	24	2	1724	2	DDHD2	8	38109804	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	507878	38109804	108254218	1014	174158											
ANK1	286	broad.mit.edu	37	chr8	41542217	41542217	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acagattctccactgtgggcGcagaagagagatgcacgtta	12	9	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41542217	T	T	41542217	1	4	229	0	1	0	0	0	0	0	0	0	620	1102	38	3		3	ANK1	8	41542217	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3432413	41542217	104821805	1015	174159											
ANK1	286	broad.mit.edu	37	chr8	41552783	41552783	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	acggagccgttttcgctcctCagaaccacgagctcgcggtc	11	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41552783	G	G	41552783	2	3	229	1	0	0	0	0	0	0	0	1	620	813	29	4		4	ANK1	8	41552783	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	10566	41552783	104811239	1016	174160											
MYST3	7994	broad.mit.edu	37	chr8	41789793	41789793	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cgttcatgtagctgtgatggGaggggcctgtgtacatcatg	15	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	41789793	T	T	41789793	3	4	229	1	0	0	0	0	1	0	0	0	10198	1174	41	3	73	3	MYST3	8	41789793	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	237010	41789793	104574229	1017	174161											
AP3M2	10947	broad.mit.edu	37	chr8	42022898	42022898	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcctgaaagcactgcGggtgtttaatgcccacttct	9	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42022898	T	T	42022898	1	4	229	0	1	0	0	0	0	0	0	0	750	1131	39	1		1	AP3M2	8	42022898	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	233105	42022898	104341124	1018	174162											
PLAT	5327	broad.mit.edu	37	chr8	42046371	42046371	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattggtcttgaactcccGggctccagcgaccctcccac	9	17	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42046371	T	T	42046371	1	4	229	0	1	0	0	0	0	0	0	0	12116	1131	39	1		1	PLAT	8	42046371	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	23473	42046371	104317651	1019	174163											
HOOK3	84376	broad.mit.edu	37	chr8	42761351	42761351	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggatgcaccatgccagacCgtggaagatttaacgaatgg	13	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42761351	A	A	42761351	2	1	229	1	0	0	0	0	0	0	0	1	7351	639	23	1		1	HOOK3	8	42761351	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	714980	42761351	103602671	1020	174164											
PXDNL	137902	broad.mit.edu	37	chr8	52384673	52384673	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttcttctctagataaaGgagttaaattgagttaaaaa	6	3	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52384673	T	T	52384673	1	4	229	0	1	0	0	0	0	0	0	0	12956	1015	35	2		2	PXDNL	8	52384673	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	9623322	52384673	93979349	1021	174165											
ST18	9705	broad.mit.edu	37	chr8	53071670	53071670	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatttggaaaatgctttgCtgttgaagagagatttgatt	12	2	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53071670	T	T	53071670	5	4	229	1	0	0	0	0	0	0	1	0	15330	811	28	4	1597	4	ST18	8	53071670	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	686997	53071670	93292352	1022	174166											
NSMAF	8439	broad.mit.edu	37	chr8	59498437	59498437	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtaaatgtcttcgccccCagtaactcacaaactatacc	4	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59498437	A	A	59498437	1	1	229	0	1	0	0	0	0	0	0	0	10769	609	21	2		2	NSMAF	8	59498437	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	6426767	59498437	86865585	1023	174167											
CHD7	55636	broad.mit.edu	37	chr8	61773534	61773534	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaagaaacattccttctccCggacagctggacccagacac	7	15	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61773534	A	A	61773534	2	1	229	1	0	0	0	0	0	0	0	1	3361	639	23	1		1	CHD7	8	61773534	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2275097	61773534	84590488	1024	174168											
ASPH	444	broad.mit.edu	37	chr8	62577896	62577896	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctgtcatctttgtctcGggatgccattttactagaaa	7	9	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62577896	T	T	62577896	1	4	229	0	1	0	0	0	0	0	0	0	1057	1124	39	1		1	ASPH	8	62577896	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	804362	62577896	83786126	1025	174169											
MYBL1	4603	broad.mit.edu	37	chr8	67485669	67485669	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatgagagctttctgccCacaaataggggttgatgtaa	11	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67485669	A	A	67485669	3	1	229	1	0	0	0	0	1	0	0	0	10103	594	21	2	739	2	MYBL1	8	67485669	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4907773	67485669	78878353	1026	174170											
SGK3	23678	broad.mit.edu	37	chr8	67763166	67763166	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctaatgtggtaagtatatAtccaaatctttctttctaga	5	7	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	67763166	G	G	67763166	1	3	229	0	1	0	0	0	0	0	0	0	14325	464	16	5		5	SGK3	8	67763166	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	277497	67763166	78600856	1027	174171											
CSPP1	79848	broad.mit.edu	37	chr8	68102872	68102872	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagactccttctgcttttcGgggtcctcttaggggcttac	10	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68102872	T	T	68102872	1	4	229	0	1	0	0	0	0	0	0	0	3996	1131	39	1		1	CSPP1	8	68102872	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	339706	68102872	78261150	1028	174172											
C8orf34	116328	broad.mit.edu	37	chr8	69688721	69688721	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttataatgtagtctgaaaTcagtttatgatacaggatga	8	4	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69688721	A	A	69688721	1	1	229	0	1	0	0	0	0	0	0	0	2448	1450	50	5		5	C8orf34	8	69688721	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1585849	69688721	76675301	1029	174173											
PI15	51050	broad.mit.edu	37	chr8	75737579	75737579	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caattccactgactcatcccCgccaaccaataatttcactg	3	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75737579	A	A	75737579	3	1	229	1	0	0	0	0	1	0	0	0	11963	652	23	1	97	1	PI15	8	75737579	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6048858	75737579	70626443	1030	174174											
ZFHX4	79776	broad.mit.edu	37	chr8	77616851	77616851	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggcatctgctggagagaaGagtgatcagtctgcttctgc	13	9	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77616851	T	T	77616851	3	4	229	1	0	0	0	0	1	0	0	0	17761	933	33	3	530	3	ZFHX4	8	77616851	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1879272	77616851	68747171	1031	174175											
ZFHX4	79776	broad.mit.edu	37	chr8	77618638	77618638	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctggcggtgtgaagtttGtgattatgaaaccaatgtcg	12	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77618638	A	A	77618638	3	1	229	1	0	0	0	0	1	0	0	0	17761	1377	48	4	2317	4	ZFHX4	8	77618638	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1787	77618638	68745384	1032	174176											
ZFHX4	79776	broad.mit.edu	37	chr8	77690582	77690582	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagcagactgagggcctaCggaagctccagctccaccag	11	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77690582	A	A	77690582	2	1	229	1	0	0	0	0	0	0	0	1	17761	527	19	3		3	ZFHX4	8	77690582	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	71944	77690582	68673440	1033	174177											
IL7	3574	broad.mit.edu	37	chr8	79673047	79673047	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggttgccaaatttgtggCttcctcaaaccaaaattcat	6	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79673047	T	T	79673047	1	4	229	0	1	0	0	0	0	0	0	0	7774	812	28	4		4	IL7	8	79673047	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1982465	79673047	66690975	1034	174178											
RALYL	138046	broad.mit.edu	37	chr8	85785640	85785640	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggcggaggcaggtaagtgAtctctgatcacagacaggtc	14	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85785640	T	T	85785640	1	4	229	0	1	0	0	0	0	0	0	0	13128	348	12	5		5	RALYL	8	85785640	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	6112593	85785640	60578382	1035	174179											
CNGB3	54714	broad.mit.edu	37	chr8	87671499	87671499	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttctccatctgtagctgtTtcagcaactccataacctgc	5	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87671499	A	A	87671499	1	1	229	0	1	0	0	0	0	0	0	0	3633	1856	64	5		5	CNGB3	8	87671499	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1885859	87671499	58692523	1036	174180											
DCAF4L2	138009	broad.mit.edu	37	chr8	88885797	88885797	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaatccaagtgattcaGtgaggcccagcacatagaat	12	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88885797	T	T	88885797	3	4	229	1	0	0	0	0	1	0	0	0	4305	1020	36	3	788	3	DCAF4L2	8	88885797	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1214298	88885797	57478225	1037	174181											
CALB1	793	broad.mit.edu	37	chr8	91090603	91090603	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgcataaattccttacctCtacaattcctatttttccat	1	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91090603	A	A	91090603	4	1	229	1	0	0	0	0	0	1	0	0	2599	922	32	3	592	3	CALB1	8	91090603	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2204806	91090603	55273419	1038	174182											
TMEM55A	55529	broad.mit.edu	37	chr8	92021080	92021080	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	caactgaaaactatccaatcTgataagacatttcttttact	3	9	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92021080	A	A	92021080	1	1	229	0	1	0	0	0	0	0	0	0	16304	1595	55	5		5	TMEM55A	8	92021080	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	930477	92021080	54342942	1039	174183											
RUNX1T1	862	broad.mit.edu	37	chr8	93023240	93023240	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcaataccttcaaaaatGggatgacaaaaggtctcagt	9	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	93023240	C	C	93023240	3	2	229	1	0	0	0	0	1	0	0	0	13858	1348	47	4	1298	4	RUNX1T1	8	93023240	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1002160	93023240	53340782	1040	174184											
KIAA1429	25962	broad.mit.edu	37	chr8	95501001	95501001	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaaactttcctcttgagCctccactgccgctatttgca	5	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95501001	A	A	95501001	3	1	229	1	0	0	0	0	1	0	0	0	8301	739	26	3	70	3	KIAA1429	8	95501001	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2477761	95501001	50863021	1041	174185											
PABPC1	26986	broad.mit.edu	37	chr8	101724686	101724686	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcacataaagattaacaccCtaaaaagaagaaaagaaaac	4	7	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101724686	A	A	101724686	5	1	229	1	0	0	0	0	0	0	1	0	11457	695	24	2	1066	2	PABPC1	8	101724686	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	6223685	101724686	44639336	1042	174186											
ATP6V1C1	528	broad.mit.edu	37	chr8	104053281	104053281	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagtggaaatgagatacccAggttccttccaaagaaaacc	8	9	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104053281	T	T	104053281	1	4	229	0	1	0	0	0	0	0	0	0	1184	203	7	5		5	ATP6V1C1	8	104053281	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	2328595	104053281	42310741	1043	174187											
RIMS2	9699	broad.mit.edu	37	chr8	104987690	104987690	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcatcgagtagatgttatAggaaggactagatcatggtc	11	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104987690	G	G	104987690	3	3	229	1	0	0	0	0	1	0	0	0	13479	410	15	5	3071	5	RIMS2	8	104987690	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	934409	104987690	41376332	1044	174188											
RIMS2	9699	broad.mit.edu	37	chr8	105260983	105260983	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagttcagtgatttcctGgatggccttggccctgctca	11	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105260983	A	A	105260983	2	1	229	1	0	0	0	0	0	0	0	1	13479	1335	47	4		4	RIMS2	8	105260983	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	273293	105260983	41103039	1045	174189											
TMEM74	157753	broad.mit.edu	37	chr8	109796659	109796659	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtccaggtgagcccccagCctcgcactctccttctccag	9	19	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109796659	A	A	109796659	3	1	229	1	0	0	0	0	1	0	0	0	16325	738	26	3	252	3	TMEM74	8	109796659	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4535676	109796659	36567363	1046	174190											
TRHR	7201	broad.mit.edu	37	chr8	110131129	110131129	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacccttaatcctgcttcCtgggatcacctccccaataa	4	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110131129	A	A	110131129	1	1	229	0	1	0	0	0	0	0	0	0	16604	696	24	2		2	TRHR	8	110131129	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	334470	110131129	36232893	1047	174191											
CSMD3	114788	broad.mit.edu	37	chr8	113266449	113266449	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aagacgcattctgacctagtAtgatgctaaatggacatagc	9	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	113266449	T	T	113266449	1	4	229	0	1	0	0	0	0	0	0	0	3980	464	16	5		5	CSMD3	8	113266449	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	3135320	113266449	33097573	1048	174192											
TAF2	6873	broad.mit.edu	37	chr8	120807872	120807872	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacccattcatcagacCtaagcaaaaagtcaaagcat	5	12	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120807872	A	A	120807872	5	1	229	1	0	0	0	0	0	0	1	0	15643	695	24	2	2580	2	TAF2	8	120807872	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	7541423	120807872	25556150	1049	174193											
COL14A1	7373	broad.mit.edu	37	chr8	121237318	121237318	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gctgttattatgacttatttCtttgacaggttgaagtcgat	9	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121237318	A	A	121237318	1	1	229	0	1	0	0	0	0	0	0	0	3703	928	32	3		3	COL14A1	8	121237318	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	429446	121237318	25126704	1050	174194											
C8orf76	84933	broad.mit.edu	37	chr8	124243670	124243670	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gctattactgctattcgcttCcacagaaaataaagagctct	6	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124243670	A	A	124243670	4	1	229	1	0	0	0	0	0	1	0	0	2463	864	30	3	469	3	C8orf76	8	124243670	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3006352	124243670	22120352	1051	174195											
C8orf76	84933	broad.mit.edu	37	chr8	124243854	124243854	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taagcctctgccaatttgccCcagttccaaggattaaaagg	8	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124243854	A	A	124243854	3	1	229	1	0	0	0	0	1	0	0	0	2463	624	22	2	653	2	C8orf76	8	124243854	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	184	124243854	22120168	1052	174196											
SQLE	6713	broad.mit.edu	37	chr8	126015633	126015633	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggagaattcctgcagccGggtggttatcatgttctcaa	12	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	126015633	T	T	126015633	2	4	229	1	0	0	0	0	0	0	0	1	15246	1103	39	1		1	SQLE	8	126015633	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1771779	126015633	20348389	1053	174197											
FAM49B	51571	broad.mit.edu	37	chr8	130861443	130861443	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataaaatcctatggtttcCatggagaaactcgtttgaaa	7	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130861443	A	A	130861443	1	1	229	0	1	0	0	0	0	0	0	0	5627	609	21	2		2	FAM49B	8	130861443	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4845810	130861443	15502579	1054	174198											
ADCY8	114	broad.mit.edu	37	chr8	131964088	131964088	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatggatcatgcaagagcCggggcaagggtgttgtgttt	15	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131964088	A	A	131964088	1	1	229	0	1	0	0	0	0	0	0	0	300	667	23	1		1	ADCY8	8	131964088	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1102645	131964088	14399934	1055	174199											
NDRG1	10397	broad.mit.edu	37	chr8	134296547	134296547	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctacatcctgcatctccCgagacatgtccctgctgtca	8	15	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134296547	A	A	134296547	3	1	229	1	0	0	0	0	1	0	0	0	10346	652	23	1	1236	1	NDRG1	8	134296547	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2332459	134296547	12067475	1056	174200											
FAM135B	51059	broad.mit.edu	37	chr8	139190670	139190670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatggtagagacacgaaagCacgaagatctagaggccaat	11	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139190670	A	A	139190670	1	1	229	0	1	0	0	0	0	0	0	0	5495	725	25	3		3	FAM135B	8	139190670	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4894123	139190670	7173352	1057	174201											
COL22A1	169044	broad.mit.edu	37	chr8	139614239	139614239	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaacaaaatcactacaggCggcatgatccaggcgggtgt	13	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139614239	T	T	139614239	1	4	229	0	1	0	0	0	0	0	0	0	3713	783	27	4		4	COL22A1	8	139614239	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	423569	139614239	6749783	1058	174202											
GML	2765	broad.mit.edu	37	chr8	143922606	143922606	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccaacattagagtatgtcCgtatcatattaggcgctgta	8	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143922606	A	A	143922606	3	1	229	1	0	0	0	0	1	0	0	0	6556	652	23	1	152	1	GML	8	143922606	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4308367	143922606	2441416	1059	174203											
CYP11B1	1584	broad.mit.edu	37	chr8	143956361	143956361	+	Intron	DEL	G	-	-													cccaggcccctccccagcccGggcctgctcacatggtgcag							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	143956361	-	-	143956361	6	5	229	0	1	1	0	1	0	0	0	0	4178	1131	39	0		0	CYP11B1	8	143956361	Intron	DEL	G	TCGA-91-6836-01A-21D-1855-08	33755	143956361	2407661	1060	174204											
CYP11B1	1584	broad.mit.edu	37	chr8	143958118	143958118	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtactggaagatgcagtccCaggcctcaaagtgctccttc	10	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	143958118	A	A	143958118	3	1	229	1	0	0	0	0	1	0	0	0	4178	595	21	2	756	2	CYP11B1	8	143958118	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1757	143958118	2405904	1061	174205											
EPPK1	83481	broad.mit.edu	37	chr8	144941610	144941610	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggggtccaggaggaaccCggtggcggcctgcgcctcca	17	14	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	144941610	A	A	144941610	3	1	229	1	0	0	0	0	1	0	0	0	5232	652	23	1	1454	1	EPPK1	8	144941610	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	983492	144941610	1422412	1062	174206											
EPPK1	83481	broad.mit.edu	37	chr8	144942172	144942172	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaggtacaggcccgtctcGgggtcctccacacagcgctc	12	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144942172	T	T	144942172	2	4	229	1	0	0	0	0	0	0	0	1	5232	1103	39	1		1	EPPK1	8	144942172	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	562	144942172	1421850	1063	174207											
PLEC	5339	broad.mit.edu	37	chr8	144991022	144991022	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgctcaccggtgctggggtCgatgatgcccccggtgcagg	17	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	144991022	T	T	144991022	3	4	229	1	0	0	0	0	1	0	0	0	12147	884	31	4	680	4	PLEC	8	144991022	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	48850	144991022	1373000	1064	174208											
HSF1	3297	broad.mit.edu	37	chr8	145532733	145532733	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggcagcgcaggggtgcGggaggcagacctgcagatgg	19	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	145532733	T	T	145532733	1	4	229	0	1	0	0	0	0	0	0	0	7462	1131	39	1		1	HSF1	8	145532733	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	541711	145532733	831289	1065	174209											
RPL8	6132	broad.mit.edu	37	chr8	146015386	146015386	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctttagaaacctcttcccCaccacccccgcccccggcct	6	22	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146015386	A	A	146015386	1	1	229	0	1	0	0	0	0	0	0	0	13713	609	21	2		2	RPL8	8	146015386	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	482653	146015386	348636	1066	174210											
ZNF7	7553	broad.mit.edu	37	chr8	146062736	146062736	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtgctgcacacttccCgtcatgctgacactgttgtc	9	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	146062736	A	A	146062736	1	1	229	0	1	0	0	0	0	0	0	0	18229	667	23	1		1	ZNF7	8	146062736	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	47350	146062736	301286	1067	174211											
C8orf33	65265	broad.mit.edu	37	chr8	146277896	146277896	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatggcggtgagcggtgtgGagaagacgcgcgggtggctg	22	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	146277896	T	T	146277896	1	4	229	0	1	0	0	0	0	0	0	0	2447	1189	41	3		3	C8orf33	8	146277896	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	215160	146277896	86126	1068	174212											
KANK1	23189	broad.mit.edu	37	chr9	732575	732575	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggtggaagatgaaatgcAggttcaagaatgtgaacctg	14	5	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	732575	T	T	732575	3	4	229	1	0	0	0	0	1	0	0	0	8046	188	7	5	3221	5	KANK1	9	732575	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08		732575	140480856	1069	174213											
DMRT3	58524	broad.mit.edu	37	chr9	990161	990161	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtaagggctgcttcacccCtgagagccctgagatagtgt	13	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	990161	A	A	990161	3	1	229	1	0	0	0	0	1	0	0	0	4627	681	24	2	581	2	DMRT3	9	990161	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	257586	990161	140223270	1070	174214											
TPD52L3	89882	broad.mit.edu	37	chr9	6328761	6328761	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tactagcagccaaagagagaCgctgtggggaactcaagagg	14	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6328761	T	T	6328761	3	4	229	1	0	0	0	0	1	0	0	0	16524	536	19	4	168	4	TPD52L3	9	6328761	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5338600	6328761	134884670	1071	174215											
PTPRD	5789	broad.mit.edu	37	chr9	8486184	8486184	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgtagctgtaaagtgaTcttctttttcagagaactca	8	7	5	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8486184	A	A	8486184	3	1	229	1	0	0	0	0	1	0	0	0	12907	1435	50	5	3249	5	PTPRD	9	8486184	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	2157423	8486184	132727247	1072	174216											
NFIB	4781	broad.mit.edu	37	chr9	14150349	14150349	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ataatcgagaatctttcatgCctctggtcaaagatagagag	9	7	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	14150349	G	G	14150349	1	3	229	0	1	0	0	0	0	0	0	0	10466	754	26	4		4	NFIB	9	14150349	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5664165	14150349	127063082	1073	174217											
CNTLN	54875	broad.mit.edu	37	chr9	17395046	17395046	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctcagcaaggacggctGggaggatgtgagtgaaagca	16	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17395046	T	T	17395046	3	4	229	1	0	0	0	0	1	0	0	0	3671	1357	47	2	2682	2	CNTLN	9	17395046	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3244697	17395046	123818385	1074	174218											
DENND4C	55667	broad.mit.edu	37	chr9	19352393	19352393	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ttaataattccaaatttgatCagtagaataaaaaaaatccc	3	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19352393	T	T	19352393	1	4	229	0	1	0	0	0	0	0	0	0	4475	841	29	4		4	DENND4C	9	19352393	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1957347	19352393	121861038	1075	174219											
MLLT3	4300	broad.mit.edu	37	chr9	20365688	20365688	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgcctggtctgggatgGtgtgaagctggagctggagc	18	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20365688	C	C	20365688	3	2	229	1	0	0	0	0	1	0	0	0	9721	1261	44	4	550	4	MLLT3	9	20365688	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1013295	20365688	120847743	1076	174220											
IFNA14	3448	broad.mit.edu	37	chr9	21209647	21209647	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagtggagattctgcaCatttggcccagaagtgccaa	11	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21209647	T	T	21209647	1	4	229	0	1	0	0	0	0	0	0	0	7604	493	17	4		4	IFNA14	9	21209647	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	843959	21209647	120003784	1077	174221											
TAF1L	138474	broad.mit.edu	37	chr9	32631871	32631871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctttccgcatctcttccCgatgtttttcatcaaaaagg	6	11	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32631871	A	A	32631871	3	1	229	1	0	0	0	0	1	0	0	0	15642	652	23	1	1777	1	TAF1L	9	32631871	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	11422224	32631871	108581560	1078	174222											
KIAA1161	57462	broad.mit.edu	37	chr9	34372354	34372354	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccatccaggcggatgggCcagtgttgcgtcctcatctc	13	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34372354	A	A	34372354	3	1	229	1	0	0	0	0	1	0	0	0	8281	740	26	3	1560	3	KIAA1161	9	34372354	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1740483	34372354	106841077	1079	174223											
STOML2	30968	broad.mit.edu	37	chr9	35102635	35102635	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgacattgcatgtcgtgaGggattggtcatctggctggc	14	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35102635	T	T	35102635	1	4	229	0	1	0	0	0	0	0	0	0	15432	1015	35	2		2	STOML2	9	35102635	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	730281	35102635	106110796	1080	174224											
UNC13B	10497	broad.mit.edu	37	chr9	35390017	35390017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttggtggttggtctgtcCatctgtctaacaacctcttt	9	10	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	35390017	A	A	35390017	1	1	229	0	1	0	0	0	0	0	0	0	17111	609	21	2		2	UNC13B	9	35390017	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	287382	35390017	105823414	1081	174225											
TLN1	7094	broad.mit.edu	37	chr9	35720232	35720232	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgacctgtagaggggtgaaCtattgagctcacagaggact	13	7	1	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35720232	G	G	35720232	1	3	229	0	1	0	0	0	0	0	0	0	16070	580	20	4		4	TLN1	9	35720232	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	330215	35720232	105493199	1082	174226											
MELK	9833	broad.mit.edu	37	chr9	36633031	36633031	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgatgcatttttagttttcAggaggaaaggtgttctatgt	11	4	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36633031	T	T	36633031	1	4	229	0	1	0	0	0	0	0	0	0	9563	203	7	5		5	MELK	9	36633031	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	912799	36633031	104580400	1083	174227											
FAM75A3	727830	broad.mit.edu	37	chr9	40702753	40702753	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	acctgatggagcctcccagtCctctcatgagcctatggaag	10	13	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40702753	A	A	40702753	3	1	229	1	0	0	0	0	1	0	0	0	5672	855	30	3	424	3	FAM75A3	9	40702753	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4069722	40702753	100510678	1084	174228											
FAM75A6	389730	broad.mit.edu	37	chr9	43629294	43629294	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtttttcatcctgcctctGggcctccgcctccgccctac	8	18	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43629294	T	T	43629294	2	4	229	1	0	0	0	0	0	0	0	1	5674	1335	47	2		2	FAM75A6	9	43629294	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2926541	43629294	97584137	1085	174229											
FAM75A6	389730	broad.mit.edu	37	chr9	43629347	43629347	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacatgatgacgtacggagaCaagatgacgcggagagacaa	14	7	0	6			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43629347	T	T	43629347	1	4	229	0	1	0	0	0	0	0	0	0	5674	493	17	4		4	FAM75A6	9	43629347	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	53	43629347	97584084	1086	174230											
FAM75A6	389730	broad.mit.edu	37	chr9	43630579	43630579	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	taagataagtaggggagtaaTaggaagaagaaccccagggc	14	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43630579	A	A	43630579	2	1	229	1	0	0	0	0	0	0	0	1	5674	1393	49	5		5	FAM75A6	9	43630579	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	1232	43630579	97582852	1087	174231											
ANKRD20A3	441425	broad.mit.edu	37	chr9	67965193	67965194	+	Intron	INS	-	TTG	TTG													cctatagcagtgttttttttINStttgtttgtttggttttggg					rs150724386	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TTG	67965194	TTG	TTG	67965193	6	5	229	0	1	1	1	0	0	0	0	0	649	1856	64	0		0	ANKRD20A3	9	67965193	Intron	INS	-	TCGA-91-6836-01A-21D-1855-08	24334614	67965193	73248238	1088	174232											
TRPM3	80036	broad.mit.edu	37	chr9	73218314	73218314	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagattacgatccattcctGggtggacggccagcgttcca	13	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	73218314	C	C	73218314	3	2	229	1	0	0	0	0	1	0	0	0	16712	1357	47	4	2447	4	TRPM3	9	73218314	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5253121	73218314	67995117	1089	174233											
TRPM3	80036	broad.mit.edu	37	chr9	73442844	73442844	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatattttccagtggtccCgttgtcagccagaatgaagt	9	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73442844	A	A	73442844	3	1	229	1	0	0	0	0	1	0	0	0	16712	652	23	1	4434	1	TRPM3	9	73442844	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	224530	73442844	67770587	1090	174234											
TMEM2	23670	broad.mit.edu	37	chr9	74319588	74319588	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtataacccttctccagCatgacgacaggctggtactg	10	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74319588	A	A	74319588	3	1	229	1	0	0	0	0	1	0	0	0	16244	710	25	3	1062	3	TMEM2	9	74319588	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	876744	74319588	66893843	1091	174235											
TMC1	117531	broad.mit.edu	37	chr9	75441686	75441686	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctaccctgaaagaggacCtaagcagtaattgagaaaga	9	8	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	75441686	A	A	75441686	1	1	229	0	1	0	0	0	0	0	0	0	16107	696	24	2		2	TMC1	9	75441686	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1122098	75441686	65771745	1092	174236											
PCSK5	5125	broad.mit.edu	37	chr9	78547386	78547386	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	agggacccacagtttcatttCaatggaaccaaaggtaagaa	9	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78547386	A	A	78547386	4	1	229	1	0	0	0	0	0	1	0	0	11697	838	29	3	290	3	PCSK5	9	78547386	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3105700	78547386	62666045	1093	174237											
GCNT1	2650	broad.mit.edu	37	chr9	79117224	79117224	+	Translation_Start_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaaccttcaaggccacgaCggagggaaaatcattggtgc	12	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79117224	T	T	79117224	1	4	229	1	0	0	0	0	0	0	0	0	6362	551	19	4		4	GCNT1	9	79117224	Translation_Start_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	569838	79117224	62096207	1094	174238											
FLJ44082	389762	broad.mit.edu	37	chr9	84562936	84562936	+	3'UTR	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	catatgaggatgctgtggggCcttccccgcaagatccgtga	13	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	84562936	G	G	84562936	1	3	229	0	1	0	0	0	0	0	0	0	5988	754	26	4		4	FLJ44082	9	84562936	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	5445712	84562936	56650495	1095	174239											
FLJ46321	389763	broad.mit.edu	37	chr9	84608134	84608134	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgtatgaggatgctgtggGgccttcccctcaaggtcctt	12	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84608134	A	A	84608134	3	1	229	1	0	0	0	0	1	0	0	0	5990	1232	43	4	2763	4	FLJ46321	9	84608134	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	45198	84608134	56605297	1096	174240											
FAM75C1	441452	broad.mit.edu	37	chr9	90537136	90537136	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctacagctggacaggagGgcaggtggccatctaagccc	13	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90537136	T	T	90537136	3	4	229	1	0	0	0	0	1	0	0	0	5676	1232	43	2	2328	2	FAM75C1	9	90537136	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5929002	90537136	50676295	1097	174241											
SEMA4D	10507	broad.mit.edu	37	chr9	92064877	92064877	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtagctcaggggacccaagTaacagggaggaaagcagatg	15	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92064877	A	A	92064877	1	1	229	0	1	0	0	0	0	0	0	0	14147	1653	57	5		5	SEMA4D	9	92064877	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1527741	92064877	49148554	1098	174242											
AUH	549	broad.mit.edu	37	chr9	94118345	94118345	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atatatcttaatattagaagCaaacagtttaatctttacac	3	6	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94118345	T	T	94118345	1	4	229	0	1	0	0	0	0	0	0	0	1224	725	25	4		4	AUH	9	94118345	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2053468	94118345	47095086	1099	174243											
ROR2	4920	broad.mit.edu	37	chr9	94519600	94519600	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtaatggtcttcatcccGttggtggccacgcactggta	13	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94519600	T	T	94519600	3	4	229	1	0	0	0	0	1	0	0	0	13638	1136	40	3	2442	3	ROR2	9	94519600	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	401255	94519600	46693831	1100	174244											
ZNF510	22869	broad.mit.edu	37	chr9	99521411	99521411	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catttgaatggtttctctccCgtgtgagttttctgatgttg	10	7	2	3	rs149138912		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99521411	A	A	99521411	2	1	229	1	0	0	0	0	0	0	0	1	18081	639	23	1		1	ZNF510	9	99521411	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	5001811	99521411	41692020	1101	174245											
ZNF782	158431	broad.mit.edu	37	chr9	99580855	99580855	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catatggctgaaagatttccCgcattcattacattcaaaag	6	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	99580855	A	A	99580855	3	1	229	1	0	0	0	0	1	0	0	0	18284	652	23	1	653	1	ZNF782	9	99580855	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	59444	99580855	41632576	1102	174246											
TMOD1	7111	broad.mit.edu	37	chr9	100331134	100331134	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcctccagccttgctcGgggtgactcatgggtatcct	14	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100331134	T	T	100331134	1	4	229	0	1	0	0	0	0	0	0	0	16356	1131	39	1		1	TMOD1	9	100331134	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	750279	100331134	40882297	1103	174247											
RNF20	56254	broad.mit.edu	37	chr9	104324633	104324633	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaagacacgctatgacaccCgccagcgcaaatgtcccaag	9	14	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104324633	A	A	104324633	3	1	229	1	0	0	0	0	1	0	0	0	13584	652	23	1	2931	1	RNF20	9	104324633	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3993499	104324633	36888798	1104	174248											
OR13C5	138799	broad.mit.edu	37	chr9	107361415	107361415	+	Frame_Shift_Del	DEL	G	-	-													ctgcactgcacagccagaaaGggaaatggtctttctttctg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	107361415	-	-	107361415	7	5	229	1	0	1	0	1	0	0	0	0	11031	1000	35	0	678	0	OR13C5	9	107361415	Frame_Shift_Del	DEL	G	TCGA-91-6836-01A-21D-1855-08	3036782	107361415	33852016	1105	174249											
SVEP1	79987	broad.mit.edu	37	chr9	113148099	113148099	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aagtatctacaactaagtgaCttgattgaaaacaacctcac	5	9	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113148099	G	G	113148099	1	3	229	0	1	0	0	0	0	0	0	0	15538	580	20	4		4	SVEP1	9	113148099	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5786684	113148099	28065332	1106	174250											
FKBP15	23307	broad.mit.edu	37	chr9	115968933	115968966	+	Intron	DEL	CAGAAGTGGGAACAACAGTCATTCAGCCTCTAGG	-	-													cagctttcttttctgtcataCagaagtgggaacaacagtca					rs60873544		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	115968966	-	-	115968933	6	5	229	0	1	1	0	1	0	0	0	0	5962	493	17	0		0	FKBP15	9	115968933	Intron	DEL	CAGAAGTGGGAACAACAGTCATTCAGCCTCTAGG	TCGA-91-6836-01A-21D-1855-08	2820834	115968933	25244498	1107	174251											
RGS3	5998	broad.mit.edu	37	chr9	116279874	116279874	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgtcagaggagctgctGctgtatgaagggaggaacaa	15	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	116279874	C	C	116279874	2	2	229	1	0	0	0	0	0	0	0	1	13415	1306	46	4		4	RGS3	9	116279874	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	310941	116279874	24933557	1108	174252											
AMBP	259	broad.mit.edu	37	chr9	116823280	116823280	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgttgccctggcagccccCgtaggggaagaggacgcact	14	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116823280	A	A	116823280	3	1	229	1	0	0	0	0	1	0	0	0	564	652	23	1	114	1	AMBP	9	116823280	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	543406	116823280	24390151	1109	174253											
COL27A1	85301	broad.mit.edu	37	chr9	117015371	117015371	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	caaacataccaaaaccttgtCtctacggaaaatacaaaaat	3	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	117015371	T	T	117015371	1	4	229	0	1	0	0	0	0	0	0	0	3717	928	32	4		4	COL27A1	9	117015371	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	192091	117015371	24198060	1110	174254											
COL27A1	85301	broad.mit.edu	37	chr9	117052426	117052426	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgctgtttccagccaacctCcctgcccgccccccacaccc	5	24	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117052426	A	A	117052426	1	1	229	0	1	0	0	0	0	0	0	0	3717	870	30	3		3	COL27A1	9	117052426	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	37055	117052426	24161005	1111	174255											
COL27A1	85301	broad.mit.edu	37	chr9	117064344	117064344	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgtcatttgactgaccCgcagtcttcttttgcagggt	9	12	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	117064344	A	A	117064344	1	1	229	0	1	0	0	0	0	0	0	0	3717	667	23	1		1	COL27A1	9	117064344	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11918	117064344	24149087	1112	174256											
COL27A1	85301	broad.mit.edu	37	chr9	117064506	117064506	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctaagctgggtctagggacgCccatgtccttttgtcacttc	10	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117064506	G	G	117064506	1	3	229	0	1	0	0	0	0	0	0	0	3717	754	26	4		4	COL27A1	9	117064506	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	162	117064506	24148925	1113	174257											
AKNA	80709	broad.mit.edu	37	chr9	117139859	117139859	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	agcatataccagctctgcacCcaccttgtaacttaccctaa	4	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	117139859	G	G	117139859	1	3	229	0	1	0	0	0	0	0	0	0	463	638	22	4		4	AKNA	9	117139859	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	75353	117139859	24073572	1114	174258											
ASTN2	23245	broad.mit.edu	37	chr9	119943285	119943285	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaaggcacctcgcatgCctgtttggagcctgcactgg	11	13	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119943285	A	A	119943285	1	1	229	0	1	0	0	0	0	0	0	0	1069	754	26	3		3	ASTN2	9	119943285	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2803426	119943285	21270146	1115	174259											
CEP110	11064	broad.mit.edu	37	chr9	123907181	123907181	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcagccagagatctcaccCgagcagaagctgagatcgaa	11	11	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123907181	A	A	123907181	2	1	229	1	0	0	0	0	0	0	0	1	3275	644	23	1		1	CEP110	9	123907181	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3963896	123907181	17306250	1116	174260											
CEP110	11064	broad.mit.edu	37	chr9	123914818	123914818	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatttaaaatcaaagaagcGggaagaaaggtggatgagag	14	3	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123914818	T	T	123914818	3	4	229	1	0	0	0	0	1	0	0	0	3275	1116	39	1	4113	1	CEP110	9	123914818	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	7637	123914818	17298613	1117	174261											
TTLL11	158135	broad.mit.edu	37	chr9	124751870	124751870	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	atatcaaacttgagcttgtcGataaggagaggtttgcagat	11	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	124751870	C	C	124751870	3	2	229	1	0	0	0	0	1	0	0	0	16850	1048	37	4	1361	4	TTLL11	9	124751870	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	837052	124751870	16461561	1118	174262											
RC3H2	54542	broad.mit.edu	37	chr9	125621032	125621032	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaatgagttatatctttcCcgcaaagatgtctgatagac	7	8	3	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125621032	A	A	125621032	2	1	229	1	0	0	0	0	0	0	0	1	13275	610	22	2		2	RC3H2	9	125621032	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	869162	125621032	15592399	1119	174263											
NEK6	10783	broad.mit.edu	37	chr9	127089651	127089651	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgtgttcatcacagccacGggcgtcgtgaagctcggtga	13	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	127089651	T	T	127089651	2	4	229	1	0	0	0	0	0	0	0	1	10423	1103	39	1		1	NEK6	9	127089651	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1468619	127089651	14123780	1120	174264											
OLFML2A	169611	broad.mit.edu	37	chr9	127572397	127572397	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgagtcgcttggacccCggcgatctctccgtgcaccg	12	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	127572397	A	A	127572397	2	1	229	1	0	0	0	0	0	0	0	1	10952	639	23	1		1	OLFML2A	9	127572397	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	482746	127572397	13641034	1121	174265											
PBX3	5090	broad.mit.edu	37	chr9	128728085	128728085	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaatatgtagacgtgcaccCgttgaactgtgtttctcctt	8	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128728085	A	A	128728085	1	1	229	0	1	0	0	0	0	0	0	0	11588	667	23	1		1	PBX3	9	128728085	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1155688	128728085	12485346	1122	174266											
GARNL3	84253	broad.mit.edu	37	chr9	130149547	130149547	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccaagggggccagtgccCgaaattctcctcagacaccc	10	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	130149547	A	A	130149547	2	1	229	1	0	0	0	0	0	0	0	1	6303	644	23	1		1	GARNL3	9	130149547	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1421462	130149547	11063884	1123	174267											
FAM102A	399665	broad.mit.edu	37	chr9	130710280	130710280	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcgtctccctggggacCtgggcatgacatggaggtaa	15	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	130710280	G	G	130710280	1	3	229	0	1	0	0	0	0	0	0	0	5428	696	24	4		4	FAM102A	9	130710280	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	560733	130710280	10503151	1124	174268											
GOLGA2	2801	broad.mit.edu	37	chr9	131036296	131036296	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgagatctacaagcccCcacagttacatcctacttta	4	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131036296	A	A	131036296	1	1	229	0	1	0	0	0	0	0	0	0	6616	638	22	2		2	GOLGA2	9	131036296	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	326016	131036296	10177135	1125	174269											
SLC27A4	10999	broad.mit.edu	37	chr9	131115780	131115780	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	aacgaggacaccatggagctGatccgggggcccgacggcgt	16	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131115780	T	T	131115780	2	4	229	1	0	0	0	0	0	0	0	1	14642	1277	45	3		3	SLC27A4	9	131115780	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	79484	131115780	10097651	1126	174270											
SPTAN1	6709	broad.mit.edu	37	chr9	131344978	131344978	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	atccttgtctttcagctgttGagccgccgcaatgcccttca	8	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	131344978	C	C	131344978	3	2	229	1	0	0	0	0	1	0	0	0	15235	1281	45	4	1706	4	SPTAN1	9	131344978	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	229198	131344978	9868453	1127	174271											
SPTAN1	6709	broad.mit.edu	37	chr9	131390083	131390083	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgcagggtctgtgcgttGggtactgatgttcttgcttt	14	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	131390083	T	T	131390083	1	4	229	0	1	0	0	0	0	0	0	0	15235	1363	47	2		2	SPTAN1	9	131390083	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	45105	131390083	9823348	1128	174272											
NUP188	23511	broad.mit.edu	37	chr9	131760930	131760930	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccaggagaggcaagccCgaggccagagccttcttgtc	14	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131760930	A	A	131760930	1	1	229	0	1	0	0	0	0	0	0	0	10853	667	23	1		1	NUP188	9	131760930	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	370847	131760930	9452501	1129	174273											
FNBP1	23048	broad.mit.edu	37	chr9	132719647	132719647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcacctcaccttttcaaCatccgcttttgtgacattga	4	13	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132719647	A	A	132719647	3	1	229	1	0	0	0	0	1	0	0	0	6023	478	17	3	1396	3	FNBP1	9	132719647	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	958717	132719647	8493784	1130	174274											
NCS1	23413	broad.mit.edu	37	chr9	132980007	132980007	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	atggggcaccatctctttgaAcaaggagccacagctttcct	9	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132980007	G	G	132980007	1	3	229	0	1	0	0	0	0	0	0	0	10335	58	2	5		5	NCS1	9	132980007	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	260360	132980007	8233424	1131	174275											
LAMC3	10319	broad.mit.edu	37	chr9	133967011	133967011	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgcagctgggctcccCggggtccttgcagaggaaac	16	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	133967011	A	A	133967011	3	1	229	1	0	0	0	0	1	0	0	0	8688	652	23	1	4675	1	LAMC3	9	133967011	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	987004	133967011	7246420	1132	174276											
POMT1	10585	broad.mit.edu	37	chr9	134379502	134379505	+	Intron	DEL	GCCG	-	-													ttctcctcgtgtgtccgggaGccgggtggctggggatccct							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	134379505	-	-	134379502	6	5	229	0	1	1	0	1	0	0	0	0	12340	986	34	0		0	POMT1	9	134379502	Intron	DEL	GCCG	TCGA-91-6836-01A-21D-1855-08	412491	134379502	6833929	1133	174277											
TSC1	7248	broad.mit.edu	37	chr9	135786398	135786398	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatacataccagttgtacCaaagactttactgtaagggt	8	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135786398	A	A	135786398	3	1	229	1	0	0	0	0	1	0	0	0	16730	594	21	2	2414	2	TSC1	9	135786398	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1406896	135786398	5427033	1134	174278											
OBP2B	29989	broad.mit.edu	37	chr9	136081314	136081314	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcactcaccctagtgttcGggaacgcagcttcctgcaga	10	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136081314	T	T	136081314	2	4	229	1	0	0	0	0	0	0	0	1	10906	1103	39	1		1	OBP2B	9	136081314	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	294916	136081314	5132117	1135	174279											
REXO4	57109	broad.mit.edu	37	chr9	136277519	136277519	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcataaacgcacttcccataCtggttcacgatggacacacg	7	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	136277519	A	A	136277519	3	1	229	1	0	0	0	0	1	0	0	0	13351	564	20	3	478	3	REXO4	9	136277519	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	196205	136277519	4935912	1136	174280											
ADAMTS13	11093	broad.mit.edu	37	chr9	136303068	136303068	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcctacctgtcctatcGgaaggctcctgggggcaggt	16	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	136303068	T	T	136303068	1	4	229	0	1	0	0	0	0	0	0	0	258	1131	39	1		1	ADAMTS13	9	136303068	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	25549	136303068	4910363	1137	174281											
PAEP	5047	broad.mit.edu	37	chr9	138454302	138454302	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtttctcatcattgagacGggctgggcgggggctcagtc	17	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	138454302	T	T	138454302	1	4	229	0	1	0	0	0	0	0	0	0	11476	1131	39	1		1	PAEP	9	138454302	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2151234	138454302	2759129	1138	174282											
SOHLH1	402381	broad.mit.edu	37	chr9	138590260	138590260	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccgaggccatgtcctccCgccggccatcgaactggggc	14	16	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	138590260	A	A	138590260	3	1	229	1	0	0	0	0	1	0	0	0	15037	652	23	1	968	1	SOHLH1	9	138590260	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	135958	138590260	2623171	1139	174283											
SEC16A	9919	broad.mit.edu	37	chr9	139370619	139370619	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccatatctgaactggtcactCggggaggaagggtccaaatt	12	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139370619	A	A	139370619	2	1	229	1	0	0	0	0	0	0	0	1	14099	871	31	3		3	SEC16A	9	139370619	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	780359	139370619	1842812	1140	174284											
C9orf172	389813	broad.mit.edu	37	chr9	139740034	139740034	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgagcgtgacgtcctggctCggacgtacccgcacccgcgc	14	17	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	139740034	A	A	139740034	2	1	229	1	0	0	0	0	0	0	0	1	2497	875	31	3		3	C9orf172	9	139740034	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	369415	139740034	1473397	1141	174285											
FUT7	2529	broad.mit.edu	37	chr9	139925491	139925491	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctccgtaatgtagtcgcGgtgctgagagttctcaaagg	12	8	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139925491	T	T	139925491	3	4	229	1	0	0	0	0	1	0	0	0	6169	1116	39	1	332	1	FUT7	9	139925491	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	185457	139925491	1287940	1142	174286											
EXD3	54932	broad.mit.edu	37	chr9	140242512	140242512	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggaccccaagaccctcccCgcaaactcacctcggccgcc	8	21	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	140242512	A	A	140242512	1	1	229	0	1	0	0	0	0	0	0	0	5341	667	23	1		1	EXD3	9	140242512	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	317021	140242512	970919	1143	174287											
CACNA1B	774	broad.mit.edu	37	chr9	141006877	141006877	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagcagcatcagtgtgacgCggagttgaggaaggagattt	15	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141006877	T	T	141006877	3	4	229	1	0	0	0	0	1	0	0	0	2565	768	27	4	5610	4	CACNA1B	9	141006877	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	764365	141006877	206554	1144	174288											
CACNA1B	774	broad.mit.edu	37	chr9	141010191	141010191	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtccaaagacagtaaaggggGaagcagacatcccatttcct	10	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	141010191	T	T	141010191	1	4	229	0	1	0	0	0	0	0	0	0	2565	1189	41	3		3	CACNA1B	9	141010191	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3314	141010191	203240	1145	174289											
TUBB8	347688	broad.mit.edu	37	chr10	94014	94014	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagctccgcgccttcggtGtagtgtcccttggcccagtt	11	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94014	T	T	94014	4	4	229	1	0	0	0	0	0	1	0	0	16887	1372	48	3	1020	3	TUBB8	10	94014	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08		94014	135440733	1146	174290											
DIP2C	22982	broad.mit.edu	37	chr10	415327	415327	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaggctctcagcctgaGggcacaccacgggaacgcgg	16	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	415327	T	T	415327	1	4	229	0	1	0	0	0	0	0	0	0	4569	1015	35	2		2	DIP2C	10	415327	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	321313	415327	135119420	1147	174291											
ITIH5	80760	broad.mit.edu	37	chr10	7608423	7608423	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatctgaccaggagtggtGgctcacacctgtaatcccag	10	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7608423	T	T	7608423	1	4	229	0	1	0	0	0	0	0	0	0	7977	1363	47	2		2	ITIH5	10	7608423	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	7193096	7608423	127926324	1148	174292											
ITIH5	80760	broad.mit.edu	37	chr10	7611545	7611545	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaaggtggcccttggaTcactggacatccatctgaag	11	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	7611545	C	C	7611545	1	2	229	0	1	0	0	0	0	0	0	0	7977	1450	50	5		5	ITIH5	10	7611545	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	3122	7611545	127923202	1149	174293											
ITIH5	80760	broad.mit.edu	37	chr10	7615250	7615250	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagacatgagcaaaacaCagcttttaggtacgtttgta	11	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7615250	A	A	7615250	1	1	229	0	1	0	0	0	0	0	0	0	7977	493	17	3		3	ITIH5	10	7615250	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3705	7615250	127919497	1150	174294											
TAF3	83860	broad.mit.edu	37	chr10	8050983	8050983	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatcatgtttttaagcacGggtttggttcgatgatgatc	11	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8050983	T	T	8050983	1	4	229	0	1	0	0	0	0	0	0	0	15644	1131	39	1		1	TAF3	10	8050983	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	435733	8050983	127483764	1151	174295											
TAF3	83860	broad.mit.edu	37	chr10	8055903	8055903	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcctttggactgacccaGggctgtcctagggacagtac	12	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8055903	T	T	8055903	1	4	229	0	1	0	0	0	0	0	0	0	15644	1015	35	2		2	TAF3	10	8055903	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4920	8055903	127478844	1152	174296											
CAMK1D	57118	broad.mit.edu	37	chr10	12811563	12811563	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcatctactgtgtccaaagGtcaaggacgtcctgacgttg	11	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	12811563	C	C	12811563	1	2	229	0	1	0	0	0	0	0	0	0	2623	1276	44	4		4	CAMK1D	10	12811563	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4755660	12811563	122723184	1153	174297											
OPTN	10133	broad.mit.edu	37	chr10	13154491	13154491	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttcccagggccgaagcGgagcaggaaaaggaccagct	15	11	0	0	rs144561412		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	13154491	T	T	13154491	2	4	229	1	0	0	0	0	0	0	0	1	10983	1103	39	1		1	OPTN	10	13154491	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	342928	13154491	122380256	1154	174298											
PHYH	5264	broad.mit.edu	37	chr10	13325784	13325784	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccatcaccaggtgcaccCgggccttgttttcctcgtag	9	15	2	0	rs62619919	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13325784	A	A	13325784	3	1	229	1	0	0	0	0	1	0	0	0	11959	652	23	1	294	1	PHYH	10	13325784	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	171293	13325784	122208963	1155	174299											
C10orf111	221060	broad.mit.edu	37	chr10	15138657	15138657	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacagtggacactggacGggatattctgtgcagctgtt	13	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15138657	T	T	15138657	3	4	229	1	0	0	0	0	1	0	0	0	1594	1116	39	1	304	1	C10orf111	10	15138657	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1812873	15138657	120396090	1156	174300											
CUBN	8029	broad.mit.edu	37	chr10	17171077	17171078	+	Intron	INS	-	ATGG	ATGG													gttcaattaagtcaccgtatINSatggatatacaaaatgactt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	ATGG	17171078	ATGG	ATGG	17171077	6	5	229	0	1	1	1	0	0	0	0	0	4084	1421	49	0		0	CUBN	10	17171077	Intron	INS	-	TCGA-91-6836-01A-21D-1855-08	2032420	17171077	118363670	1157	174301											
ST8SIA6	338596	broad.mit.edu	37	chr10	17363151	17363152	+	Frame_Shift_Ins	INS	-	A	A													tttagttctccagaaaagggINSccagatctttcaggtacttg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17363152	A	A	17363151	7	5	229	1	0	1	1	0	0	0	0	0	15354	1203	42	0	277	0	ST8SIA6	10	17363151	Frame_Shift_Ins	INS	-	TCGA-91-6836-01A-21D-1855-08	192074	17363151	118171596	1158	174302											
ST8SIA6	338596	broad.mit.edu	37	chr10	17369045	17369045	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcggatttatctatttcagtTccacagagagacttattcag	7	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17369045	A	A	17369045	2	1	229	1	0	0	0	0	0	0	0	1	15354	1770	62	5		5	ST8SIA6	10	17369045	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	5894	17369045	118165702	1159	174303											
STAM	8027	broad.mit.edu	37	chr10	17747817	17747817	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tagctcatgcctgtaatctcAgcaatttgggaggccaaggc	11	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	17747817	T	T	17747817	1	4	229	0	1	0	0	0	0	0	0	0	15366	203	7	5		5	STAM	10	17747817	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	378772	17747817	117786930	1160	174304											
ARL5B	221079	broad.mit.edu	37	chr10	18948534	18948534	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcagcggcacctgctgcCgagggaccccgcggcccgcc	16	19	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18948534	T	T	18948534	1	4	229	0	1	0	0	0	0	0	0	0	944	667	23	4		4	ARL5B	10	18948534	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	1200717	18948534	116586213	1161	174305											
PLXDC2	84898	broad.mit.edu	37	chr10	20500551	20500551	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taatttctgtccaccaccctGcaccctatccttccttttct	2	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20500551	T	T	20500551	1	4	229	0	1	0	0	0	0	0	0	0	12213	1334	46	3		3	PLXDC2	10	20500551	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1552017	20500551	115034196	1162	174306											
BMI1	648	broad.mit.edu	37	chr10	22616439	22616439	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcaagtaaaatattataGcacaaaagaagactatagaa	5	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22616439	A	A	22616439	1	1	229	0	1	0	0	0	0	0	0	0	1461	986	34	4		4	BMI1	10	22616439	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2115888	22616439	112918308	1163	174307											
ARMC3	219681	broad.mit.edu	37	chr10	23235080	23235080	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcctttcagtttgaccCattaatgattgaaagcaaaa	6	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23235080	A	A	23235080	3	1	229	1	0	0	0	0	1	0	0	0	956	594	21	2	62	2	ARMC3	10	23235080	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	618641	23235080	112299667	1164	174308											
ARMC3	219681	broad.mit.edu	37	chr10	23244615	23244615	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttattctgagggaaatacGaacggaagccaagagtaatg	12	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23244615	T	T	23244615	1	4	229	0	1	0	0	0	0	0	0	0	956	1073	37	3		3	ARMC3	10	23244615	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	9535	23244615	112290132	1165	174309											
PRTFDC1	56952	broad.mit.edu	37	chr10	25140290	25140290	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagttcttataaaaagggcGgttagggatttgcatgcaag	12	4	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25140290	T	T	25140290	1	4	229	0	1	0	0	0	0	0	0	0	12743	1131	39	1		1	PRTFDC1	10	25140290	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1895675	25140290	110394457	1166	174310											
PRTFDC1	56952	broad.mit.edu	37	chr10	25160828	25160828	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatgaattggaaaacccGggagcatgtctgaaatgtcc	11	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25160828	T	T	25160828	1	4	229	0	1	0	0	0	0	0	0	0	12743	1131	39	1		1	PRTFDC1	10	25160828	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	20538	25160828	110373919	1167	174311											
APBB1IP	54518	broad.mit.edu	37	chr10	26781461	26781461	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgatatttcaatgtagGttcttttctattttccctaa	4	11	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26781461	T	T	26781461	1	4	229	0	1	0	0	0	0	0	0	0	762	1276	44	3		3	APBB1IP	10	26781461	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1620633	26781461	108753286	1168	174312											
ANKRD26	22852	broad.mit.edu	37	chr10	27389139	27389139	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcggtctcggacgtggtaGccgggctgcgagtaggcgcc	17	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27389139	T	T	27389139	2	4	229	1	0	0	0	0	0	0	0	1	654	958	34	3		3	ANKRD26	10	27389139	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	607678	27389139	108145608	1169	174313											
YME1L1	10730	broad.mit.edu	37	chr10	27412570	27412570	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaacatcagcttctccCgccacagctcgggcaagaag	10	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27412570	A	A	27412570	2	1	229	1	0	0	0	0	0	0	0	1	17614	639	23	1		1	YME1L1	10	27412570	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	23431	27412570	108122177	1170	174314											
ACBD5	91452	broad.mit.edu	37	chr10	27499963	27499963	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttgactggaatgaccaccCaagtaatactgaaatggtcc	10	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27499963	A	A	27499963	3	1	229	1	0	0	0	0	1	0	0	0	125	593	21	2	613	2	ACBD5	10	27499963	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	87393	27499963	108034784	1171	174315											
PTCHD3	374308	broad.mit.edu	37	chr10	27687285	27687285	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtctgaatgaagccccGggaagaaatgatttcatttg	11	6	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27687285	T	T	27687285	2	4	229	1	0	0	0	0	0	0	0	1	12840	1115	39	1		1	PTCHD3	10	27687285	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	187322	27687285	107847462	1172	174316											
LYZL1	84569	broad.mit.edu	37	chr10	29599211	29599211	+	Intron	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaattgacaaactcacctcCgcagagtggtccaaccaatg	9	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29599211	G	G	29599211	1	3	229	0	1	0	0	0	0	0	0	0	9219	667	23	4		4	LYZL1	10	29599211	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1911926	29599211	105935536	1173	174317											
SVIL	6840	broad.mit.edu	37	chr10	29811300	29811300	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaagcaagctgtaagctcctCcccgagagaattacttttcg	8	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29811300	A	A	29811300	1	1	229	0	1	0	0	0	0	0	0	0	15539	870	30	3		3	SVIL	10	29811300	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	212089	29811300	105723447	1174	174318											
SVIL	6840	broad.mit.edu	37	chr10	29820930	29820930	+	Splice_Site	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcgcatacgcatgcctaCctatccgattcctttcgttc	6	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29820930	T	T	29820930	5	4	229	1	0	0	0	0	0	0	1	0	15539	521	18	4	4754	4	SVIL	10	29820930	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	9630	29820930	105713817	1175	174319											
LYZL2	119180	broad.mit.edu	37	chr10	30900803	30900803	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaatattgggaggaaacGggacaagatgacacaggcat	14	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30900803	T	T	30900803	1	4	229	0	1	0	0	0	0	0	0	0	9220	1131	39	1		1	LYZL2	10	30900803	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	1079873	30900803	104633944	1176	174320											
LYZL2	119180	broad.mit.edu	37	chr10	30915125	30915125	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagatgccgtagtcgatGctgccgtcatccaggaccgt	13	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30915125	T	T	30915125	3	4	229	1	0	0	0	0	1	0	0	0	9220	1310	46	3	251	3	LYZL2	10	30915125	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	14322	30915125	104619622	1177	174321											
ARHGAP12	94134	broad.mit.edu	37	chr10	32096561	32096561	+	3'UTR	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggaatccagcttctaTtccacaggttgtcttcagta	8	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32096561	C	C	32096561	1	2	229	0	1	0	0	0	0	0	0	0	867	1508	52	5		5	ARHGAP12	10	32096561	3'UTR	SNP	T	TCGA-91-6836-01A-21D-1855-08	1181436	32096561	103438186	1178	174322											
ANKRD30A	91074	broad.mit.edu	37	chr10	37441153	37441153	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcctcttcatatgtcacccCgaaattatttttgatatttt	4	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37441153	A	A	37441153	1	1	229	0	1	0	0	0	0	0	0	0	658	667	23	1		1	ANKRD30A	10	37441153	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5344592	37441153	98093594	1179	174323											
ZNF33B	7582	broad.mit.edu	37	chr10	43089515	43089515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atagtgtttcacaggtacccCatcatgtttagaaagggtgg	11	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43089515	A	A	43089515	3	1	229	1	0	0	0	0	1	0	0	0	17981	594	21	2	1457	2	ZNF33B	10	43089515	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5648362	43089515	92445232	1180	174324											
FAM21B	55747	broad.mit.edu	37	chr10	47919965	47919965	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgttttcttctcaaagtgcGagtaagttaaaaggtgcatc	9	6	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47919965	T	T	47919965	2	4	229	1	0	0	0	0	0	0	0	1	5588	1045	37	3		3	FAM21B	10	47919965	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	4830450	47919965	87614782	1181	174325											
FRMPD2	143162	broad.mit.edu	37	chr10	49400636	49400636	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcaaaactcagtctcaaAaaaaaaataaaataaatctt	3	6	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	49400636	C	C	49400636	1	2	229	0	1	0	0	0	0	0	0	0	6118	29	1	5		5	FRMPD2	10	49400636	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1480671	49400636	86134111	1182	174326											
LRRC18	474354	broad.mit.edu	37	chr10	50121436	50121436	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggtcaggttccaagtcaCctccagtcttcccaggagtc	10	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50121436	T	T	50121436	1	4	229	0	1	0	0	0	0	0	0	0	9061	521	18	4		4	LRRC18	10	50121436	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	720800	50121436	85413311	1183	174327											
ERCC6	2074	broad.mit.edu	37	chr10	50732718	50732718	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gctttttctcctgtttctgaGggatctgggtaccaaaaggt	11	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	50732718	C	C	50732718	3	2	229	1	0	0	0	0	1	0	0	0	5259	1000	35	4	3791	4	ERCC6	10	50732718	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	611282	50732718	84802029	1184	174328											
FAM21A	387680	broad.mit.edu	37	chr10	51863825	51863825	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgttttcttctcaaagtgcGagtaagttaaaaggtgcgtc	10	6	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51863825	T	T	51863825	2	4	229	1	0	0	0	0	0	0	0	1	5587	1045	37	3		3	FAM21A	10	51863825	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1131107	51863825	83670922	1185	174329											
FAM13C	220965	broad.mit.edu	37	chr10	61043080	61043080	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaagagactgaactacCttgagagtacaatttgggac	10	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61043080	A	A	61043080	1	1	229	0	1	0	0	0	0	0	0	0	5500	696	24	2		2	FAM13C	10	61043080	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	9179255	61043080	74491667	1186	174330											
JMJD1C	221037	broad.mit.edu	37	chr10	64950684	64950684	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	attgaatatactggggcaaaGgcaatgccagcatctgtaga	11	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	64950684	C	C	64950684	2	2	229	1	0	0	0	0	0	0	0	1	8020	987	35	4		4	JMJD1C	10	64950684	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3907604	64950684	70584063	1187	174331											
DNAJC12	56521	broad.mit.edu	37	chr10	69571282	69571282	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacccagcgagaaacccacCgtcttcactgagtcattcaa	7	15	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69571282	A	A	69571282	2	1	229	1	0	0	0	0	0	0	0	1	4671	666	23	1		1	DNAJC12	10	69571282	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	4620598	69571282	65963465	1188	174332											
HK1	3098	broad.mit.edu	37	chr10	71103615	71103615	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctatgccatgcggctctcCgatgaaactctcatagatat	7	12	3	2	rs149919826		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71103615	A	A	71103615	2	1	229	1	0	0	0	0	0	0	0	1	7257	639	23	1		1	HK1	10	71103615	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1532333	71103615	64431132	1189	174333											
KIAA1274	27143	broad.mit.edu	37	chr10	72291202	72291202	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcctggagctggccatcCggaaagaggtgaggaccagt	16	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72291202	T	T	72291202	3	4	229	1	0	0	0	0	1	0	0	0	8290	643	23	4	639	4	KIAA1274	10	72291202	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1187587	72291202	63243545	1190	174334											
UNC5B	219699	broad.mit.edu	37	chr10	73050588	73050588	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggttggccctgggccctGccctttccagggacccaggg	15	16	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73050588	T	T	73050588	1	4	229	0	1	0	0	0	0	0	0	0	17118	1334	46	3		3	UNC5B	10	73050588	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	759386	73050588	62484159	1191	174335											
MYST4	23522	broad.mit.edu	37	chr10	76784718	76784718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggaattaatttcagagGccttttgtactaaagaagaa	9	4	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76784718	T	T	76784718	3	4	229	1	0	0	0	0	1	0	0	0	10199	1194	42	3	3433	3	MYST4	10	76784718	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3734130	76784718	58750029	1192	174336											
KCNMA1	3778	broad.mit.edu	37	chr10	78868234	78868234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaaaacctcttggcataCttactttcttccactaaccg	4	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78868234	A	A	78868234	1	1	229	0	1	0	0	0	0	0	0	0	8143	580	20	3		3	KCNMA1	10	78868234	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2083516	78868234	56666513	1193	174337											
DLG5	9231	broad.mit.edu	37	chr10	79628818	79628818	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcttcctctcccatgaaCcccagctgccttggctttca	6	18	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79628818	A	A	79628818	1	1	229	0	1	0	0	0	0	0	0	0	4598	522	18	3		3	DLG5	10	79628818	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	760584	79628818	55905929	1194	174338											
POLR3A	11128	broad.mit.edu	37	chr10	79741204	79741204	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgtaggtcatgaggtcGgagagcagcatcacgtgcct	13	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79741204	T	T	79741204	2	4	229	1	0	0	0	0	0	0	0	1	12323	1103	39	1		1	POLR3A	10	79741204	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	112386	79741204	55793543	1195	174339											
POLR3A	11128	broad.mit.edu	37	chr10	79784767	79784767	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggcagatgtttttcttcCggcacttgtcagagattttc	10	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	79784767	A	A	79784767	3	1	229	1	0	0	0	0	1	0	0	0	12323	652	23	1	3832	1	POLR3A	10	79784767	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	43563	79784767	55749980	1196	174340											
PPIF	10105	broad.mit.edu	37	chr10	81108758	81108758	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccactgtgggggtgggtGggtgctgagagacacccacc	18	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81108758	T	T	81108758	1	4	229	0	1	0	0	0	0	0	0	0	12424	1363	47	2		2	PPIF	10	81108758	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1323991	81108758	54425989	1197	174341											
LRIT2	340745	broad.mit.edu	37	chr10	85984284	85984284	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgccttggacagagggcCctgacatatcaggtaggaat	12	11	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85984284	A	A	85984284	3	1	229	1	0	0	0	0	1	0	0	0	9035	623	22	2	963	2	LRIT2	10	85984284	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	4875526	85984284	49550463	1198	174342											
FAM22D	728130	broad.mit.edu	37	chr10	89118066	89118066	+	Nonsense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaattttcctgtttcagtTggactcaggagcatctggtg	10	8	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89118066	A	A	89118066	4	1	229	1	0	0	0	0	0	1	0	0	5591	1821	63	5	46	5	FAM22D	10	89118066	Nonsense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	3133782	89118066	46416681	1199	174343											
ATAD1	84896	broad.mit.edu	37	chr10	89574407	89574407	+	5'UTR	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtcactaggtaataacTatacttattaaaattgtaag	5	4	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89574407	A	A	89574407	1	1	229	0	1	0	0	0	0	0	0	0	1074	1537	53	5		5	ATAD1	10	89574407	5'UTR	SNP	T	TCGA-91-6836-01A-21D-1855-08	456341	89574407	45960340	1200	174344											
LIPA	3988	broad.mit.edu	37	chr10	91005605	91005605	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatctgaaacagtctccCacattaacaagcaaaggagc	7	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91005605	A	A	91005605	1	1	229	0	1	0	0	0	0	0	0	0	8892	609	21	2		2	LIPA	10	91005605	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1431198	91005605	44529142	1201	174345											
LGI1	9211	broad.mit.edu	37	chr10	95518125	95518125	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttatctcattgtaaggccCgtaagcattttgatatctaa	7	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95518125	A	A	95518125	1	1	229	0	1	0	0	0	0	0	0	0	8823	667	23	1		1	LGI1	10	95518125	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4512520	95518125	40016622	1202	174346											
PLCE1	51196	broad.mit.edu	37	chr10	96022534	96022534	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtgatgcctctggCtattctaataatttgctgct	10	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96022534	A	A	96022534	1	1	229	0	1	0	0	0	0	0	0	0	12129	812	28	3		3	PLCE1	10	96022534	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	504409	96022534	39512213	1203	174347											
ALDH18A1	5832	broad.mit.edu	37	chr10	97388190	97388190	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacagactgctgatctcCgggataaaatatatcaataa	7	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	97388190	A	A	97388190	4	1	229	1	0	0	0	0	0	1	0	0	489	661	23	1	1563	1	ALDH18A1	10	97388190	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1365656	97388190	38146557	1204	174348											
COX15	1355	broad.mit.edu	37	chr10	101478327	101478327	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	caaatactagttctgatataGaaaaagtctgttatcccaga	6	7	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	101478327	T	T	101478327	1	4	229	0	1	0	0	0	0	0	0	0	3796	957	33	3		3	COX15	10	101478327	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4090137	101478327	34056420	1205	174349											
SEC31B	25956	broad.mit.edu	37	chr10	102265900	102265900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagaacactgaagggtccCgagggcaccactgcacatca	11	13	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102265900	A	A	102265900	3	1	229	1	0	0	0	0	1	0	0	0	14112	652	23	1	2670	1	SEC31B	10	102265900	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	787573	102265900	33268847	1206	174350											
FBXW4	6468	broad.mit.edu	37	chr10	103436138	103436138	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatcccctctcggcagcgccCcagtctccagttctgagaca	8	17	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	103436138	A	A	103436138	3	1	229	1	0	0	0	0	1	0	0	0	5824	623	22	2	954	2	FBXW4	10	103436138	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1170238	103436138	32098609	1207	174351											
NFKB2	4791	broad.mit.edu	37	chr10	104157257	104157257	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagggagggagaagcccaGgggtcacacatgtacctact	14	10	1	1	rs116607432	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104157257	T	T	104157257	1	4	229	0	1	0	0	0	0	0	0	0	10471	1015	35	2		2	NFKB2	10	104157257	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	721119	104157257	31377490	1208	174352											
NFKB2	4791	broad.mit.edu	37	chr10	104159862	104159862	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacctagccatcatccacGggcagaccagtgtcattgag	10	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104159862	T	T	104159862	3	4	229	1	0	0	0	0	1	0	0	0	10471	1116	39	1	1549	1	NFKB2	10	104159862	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2605	104159862	31374885	1209	174353											
SORCS3	22986	broad.mit.edu	37	chr10	106899298	106899298	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctaggcaaagggagggttgGagaggctgctttgttgggct	18	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	106899298	T	T	106899298	1	4	229	0	1	0	0	0	0	0	0	0	15046	1189	41	3		3	SORCS3	10	106899298	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2739436	106899298	28635449	1210	174354											
SORCS1	114815	broad.mit.edu	37	chr10	108378025	108378025	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atgcttccctccaaggtgatCaaaggctaaaataaacaagg	8	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108378025	A	A	108378025	3	1	229	1	0	0	0	0	1	0	0	0	15044	825	29	3	962	3	SORCS1	10	108378025	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1478727	108378025	27156722	1211	174355											
SORCS1	114815	broad.mit.edu	37	chr10	108439445	108439445	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaatgatccctgatgtGtagggattctcagagacctt	11	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108439445	T	T	108439445	4	4	229	1	0	0	0	0	0	1	0	0	15044	1372	48	3	2196	3	SORCS1	10	108439445	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	61420	108439445	27095302	1212	174356											
GPAM	57678	broad.mit.edu	37	chr10	113935464	113935464	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcgtcttgcaagccatcCgcggtgtctgtgaaaatgat	12	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113935464	A	A	113935464	4	1	229	1	0	0	0	0	0	1	0	0	6653	661	23	1	2247	1	GPAM	10	113935464	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5496019	113935464	21599283	1213	174357											
GPAM	57678	broad.mit.edu	37	chr10	113941369	113941369	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tattatgttgctgccagtatTtgcaccttcataaacatcat	5	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	113941369	G	G	113941369	1	3	229	0	1	0	0	0	0	0	0	0	6653	1856	64	5		5	GPAM	10	113941369	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	5905	113941369	21593378	1214	174358											
TECTB	6975	broad.mit.edu	37	chr10	114044342	114044342	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accatcatcaccaaaatcccCgagtgtccctatggatggga	8	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114044342	A	A	114044342	2	1	229	1	0	0	0	0	0	0	0	1	15870	639	23	1		1	TECTB	10	114044342	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	102973	114044342	21490405	1215	174359											
VAX1	11023	broad.mit.edu	37	chr10	118897308	118897308	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accccaaagaacgcgcctggCagccctgcccatccctacct	7	20	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118897308	A	A	118897308	1	1	229	0	1	0	0	0	0	0	0	0	17261	725	25	3		3	VAX1	10	118897308	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4852966	118897308	16637439	1216	174360											
KCNK18	338567	broad.mit.edu	37	chr10	118969098	118969098	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccctgatgttcctcgttcTcacggacacaggcgacatcc	8	17	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118969098	A	A	118969098	3	1	229	1	0	0	0	0	1	0	0	0	8135	1551	54	5	453	5	KCNK18	10	118969098	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	71790	118969098	16565649	1217	174361											
SLC18A2	6571	broad.mit.edu	37	chr10	119015204	119015204	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgagtcaggggaatgCgaggtgatggccgcgtgctg	17	8	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119015204	A	A	119015204	1	1	229	0	1	0	0	0	0	0	0	0	14539	783	27	3		3	SLC18A2	10	119015204	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	46106	119015204	16519543	1218	174362											
PDZD8	118987	broad.mit.edu	37	chr10	119044270	119044270	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttctgaagtgacatctttGgccacttcttgctttgctaa	8	9	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119044270	A	A	119044270	2	1	229	1	0	0	0	0	0	0	0	1	11799	1335	47	4		4	PDZD8	10	119044270	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	29066	119044270	16490477	1219	174363											
DMBT1	1755	broad.mit.edu	37	chr10	124348440	124348440	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatagggattgatgaaggGttcttgtgttctcctatagg	13	5	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	124348440	A	A	124348440	1	1	229	0	1	0	0	0	0	0	0	0	4617	1276	44	4		4	DMBT1	10	124348440	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	5304170	124348440	11186307	1220	174364											
MKI67	4288	broad.mit.edu	37	chr10	129906863	129906863	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcattccagttacacGggctgctgggtccaggatct	10	12	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	129906863	T	T	129906863	3	4	229	1	0	0	0	0	1	0	0	0	9691	1116	39	1	6541	1	MKI67	10	129906863	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5558423	129906863	5627884	1221	174365											
EBF3	253738	broad.mit.edu	37	chr10	131666017	131666017	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatgaagacagcaacagCgcgaagctgaccgagtccgc	11	12	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	131666017	A	A	131666017	1	1	229	0	1	0	0	0	0	0	0	0	4922	783	27	3		3	EBF3	10	131666017	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1759154	131666017	3868730	1222	174366											
PAOX	196743	broad.mit.edu	37	chr10	135202382	135202382	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	catcccagggctctctttctCcatgcaggtctggtcatccc	8	16	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	135202382	A	A	135202382	1	1	229	0	1	0	0	0	0	0	0	0	11517	870	30	3		3	PAOX	10	135202382	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3536365	135202382	332365	1223	174367											
SIRT3	23410	broad.mit.edu	37	chr11	218977	218977	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagggccccaccaagtccCggttgatgagcagtcgggga	14	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	218977	A	A	218977	3	1	229	1	0	0	0	0	1	0	0	0	14452	652	23	1	173	1	SIRT3	11	218977	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08		218977	134787539	1224	174368											
INS-IGF2	723961	broad.mit.edu	37	chr11	2182168	2182168	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccagagggccagcagcgCcagcaggggcaggaggcgca	17	14	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2182168	A	A	2182168	3	1	229	1	0	0	0	0	1	0	0	0	7833	739	26	3	580	3	INS-IGF2	11	2182168	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1963191	2182168	132824348	1225	174369											
SPON1	10418	broad.mit.edu	37	chr11	14101549	14101549	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaattggtccgagaagacaCacccaaaggattaccctcgt	10	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14101549	A	A	14101549	3	1	229	1	0	0	0	0	1	0	0	0	15200	477	17	3	675	3	SPON1	11	14101549	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	11919381	14101549	120904967	1226	174370											
SAA2	6289	broad.mit.edu	37	chr11	18266884	18266884	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatccctgccccgagggcCtcatagccaggtctcctgag	11	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18266884	A	A	18266884	1	1	229	0	1	0	0	0	0	0	0	0	13910	696	24	2		2	SAA2	11	18266884	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	4165335	18266884	116739632	1227	174371											
E2F8	79733	broad.mit.edu	37	chr11	19251621	19251621	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	taagcctcatattgaagccaCgcttttatggaacatgcaga	8	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19251621	T	T	19251621	1	4	229	0	1	0	0	0	0	0	0	0	4913	551	19	4		4	E2F8	11	19251621	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	984737	19251621	115754895	1228	174372											
DEPDC7	91614	broad.mit.edu	37	chr11	33047648	33047648	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggcaggattttgtctacCtttttatgagatgcctactg	9	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33047648	A	A	33047648	1	1	229	0	1	0	0	0	0	0	0	0	4484	696	24	2		2	DEPDC7	11	33047648	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	13796027	33047648	101958868	1229	174373											
C11orf41	25758	broad.mit.edu	37	chr11	33628310	33628310	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cataaaacccacagccctccCcatggtgccccccacctcgg	6	21	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33628310	A	A	33628310	3	1	229	1	0	0	0	0	1	0	0	0	1652	623	22	2	4180	2	C11orf41	11	33628310	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	580662	33628310	101378206	1230	174374											
LRRC4C	57689	broad.mit.edu	37	chr11	40136344	40136344	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtgaaggttttctctgtcGaccttgtgctctgtggtgtg	14	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40136344	T	T	40136344	4	4	229	1	0	0	0	0	0	1	0	0	9095	1059	37	3	427	3	LRRC4C	11	40136344	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	6508034	40136344	94870172	1231	174375											
NUP160	23279	broad.mit.edu	37	chr11	47826139	47826139	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	gcaatttcccatcaaacattCtagaaagagacaaccaggat	6	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47826139	A	A	47826139	4	1	229	1	0	0	0	0	0	1	0	0	10852	922	32	3	1736	3	NUP160	11	47826139	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	7689795	47826139	87180377	1232	174376											
OR4A5	81318	broad.mit.edu	37	chr11	51412108	51412108	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtctataaatagctggccCatgcaaccttggaaggaaat	10	8	1	0	rs148710182		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51412108	A	A	51412108	3	1	229	1	0	0	0	0	1	0	0	0	11137	594	21	2	663	2	OR4A5	11	51412108	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3585969	51412108	83594408	1233	174377											
OR4C15	81309	broad.mit.edu	37	chr11	55322787	55322787	+	Silent	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatcttaaatcccttgctCaatcctttgatttacacttt	2	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	55322787	G	G	55322787	2	3	229	1	0	0	0	0	0	0	0	1	11142	813	29	4		4	OR4C15	11	55322787	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3910679	55322787	79683729	1234	174378											
OR5D16	390144	broad.mit.edu	37	chr11	55606473	55606473	+	Missense_Mutation	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctccatcattgctcccatGatgctggtgaacctggttgt	9	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	55606473	C	C	55606473	3	2	229	1	0	0	0	0	1	0	0	0	11250	1290	45	4	248	4	OR5D16	11	55606473	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	283686	55606473	79400043	1235	174379											
SPRYD5	84767	broad.mit.edu	37	chr11	55653297	55653297	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atacactgtcccattgagtgGgctgctgaggaacgccgggt	14	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55653297	T	T	55653297	3	4	229	1	0	0	0	0	1	0	0	0	15229	1241	43	2	395	2	SPRYD5	11	55653297	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	46824	55653297	79353219	1236	174380											
SPRYD5	84767	broad.mit.edu	37	chr11	55658705	55658705	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgaccctcaagatgatcCcgatatcactggaaaatctg	8	10	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55658705	T	T	55658705	3	4	229	1	0	0	0	0	1	0	0	0	15229	623	22	4	978	4	SPRYD5	11	55658705	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5408	55658705	79347811	1237	174381											
OR5W2	390148	broad.mit.edu	37	chr11	55681482	55681482	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taacactaactcattgacctGtgtatctgagcgagagagta	9	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55681482	T	T	55681482	3	4	229	1	0	0	0	0	1	0	0	0	11279	1386	48	3	357	3	OR5W2	11	55681482	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	22777	55681482	79325034	1238	174382											
OR8H3	390152	broad.mit.edu	37	chr11	55889816	55889816	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgcccctgctacgtatcaaCtttgatttctcagcagttta	7	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55889816	A	A	55889816	1	1	229	0	1	0	0	0	0	0	0	0	11333	580	20	3		3	OR8H3	11	55889816	5'Flank	SNP	C	TCGA-91-6836-01A-21D-1855-08	208334	55889816	79116700	1239	174383											
OR5T3	390154	broad.mit.edu	37	chr11	56020494	56020494	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttctctacatgtggctcTcacctaactggagtgacaat	8	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56020494	A	A	56020494	2	1	229	1	0	0	0	0	0	0	0	1	11277	1538	54	5		5	OR5T3	11	56020494	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	130678	56020494	78986022	1240	174384											
OR5T1	390155	broad.mit.edu	37	chr11	56044028	56044028	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccatcatctacagtttgcGgaacaaagatgtaaaggagg	10	8	2	1	rs143790336		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56044028	C	C	56044028	3	2	229	1	0	0	0	0	1	0	0	0	11275	1116	39	4	916	4	OR5T1	11	56044028	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	23534	56044028	78962488	1241	174385											
OR5M11	219487	broad.mit.edu	37	chr11	56310560	56310560	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtgaggaagaagtacatGggcgtgtgaaggcgagagtc	17	4	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56310560	T	T	56310560	2	4	229	1	0	0	0	0	0	0	0	1	11268	1335	47	2		2	OR5M11	11	56310560	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	266532	56310560	78695956	1242	174386											
PRG2	5553	broad.mit.edu	37	chr11	57156386	57156386	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctactgacacccccaggGccctcaatgggaaaaagagc	10	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57156386	T	T	57156386	1	4	229	0	1	0	0	0	0	0	0	0	12585	1218	42	3		3	PRG2	11	57156386	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	845826	57156386	77850130	1243	174387											
LPXN	9404	broad.mit.edu	37	chr11	58318706	58318706	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcatctgctctcactgcaacCtggcccaagggaagaaccaa	9	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58318706	A	A	58318706	5	1	229	1	0	0	0	0	0	0	1	0	9016	695	24	2	862	2	LPXN	11	58318706	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	1162320	58318706	76687810	1244	174388											
GLYATL1	92292	broad.mit.edu	37	chr11	58714480	58714480	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcattttaaattcatttGtttccttaacattttccctt	3	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58714480	A	A	58714480	1	1	229	0	1	0	0	0	0	0	0	0	6544	1392	48	4		4	GLYATL1	11	58714480	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	395774	58714480	76292036	1245	174389											
OR4D10	390197	broad.mit.edu	37	chr11	59245022	59245022	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtatgtgacaactttgctGggaaacctcctcatcatggt	10	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	59245022	T	T	59245022	2	4	229	1	0	0	0	0	0	0	0	1	11148	1335	47	2		2	OR4D10	11	59245022	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	530542	59245022	75761494	1246	174390											
OR4D10	390197	broad.mit.edu	37	chr11	59245288	59245288	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatgtggccatctccaagcCcctgcactatgcgactatca	7	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59245288	A	A	59245288	3	1	229	1	0	0	0	0	1	0	0	0	11148	623	22	2	388	2	OR4D10	11	59245288	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	266	59245288	75761228	1247	174391											
PGA3	643834	broad.mit.edu	37	chr11	60974843	60974843	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgggctccaagggtctaGggcgaaaggtcactgctcac	13	11	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60974843	T	T	60974843	1	4	229	0	1	0	0	0	0	0	0	0	11866	1015	35	2		2	PGA3	11	60974843	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1729555	60974843	74031673	1248	174392											
DDB1	1642	broad.mit.edu	37	chr11	61081431	61081431	+	Frame_Shift_Del	DEL	A	-	-													gtggtcatcaggatggagcgAggaatgatctctgtgagaaa							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	61081431	-	-	61081431	7	5	229	1	0	1	0	1	0	0	0	0	4356	291	11	0	1710	0	DDB1	11	61081431	Frame_Shift_Del	DEL	A	TCGA-91-6836-01A-21D-1855-08	106588	61081431	73925085	1249	174393											
EEF1G	1937	broad.mit.edu	37	chr11	62327811	62327812	+	Frame_Shift_Ins	INS	-	T	T													tcttcagggaagcgatactcINStgagtaccacagggaccagc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62327812	T	T	62327811	7	5	229	1	0	1	1	0	0	0	0	0	4968	922	32	0	352	0	EEF1G	11	62327811	Frame_Shift_Ins	INS	-	TCGA-91-6836-01A-21D-1855-08	1246380	62327811	72678705	1250	174394											
POLR2G	5436	broad.mit.edu	37	chr11	62533807	62533807	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagggatgtgtgggggtgGggagtaatataggattcaat	18	1	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	62533807	T	T	62533807	1	4	229	0	1	0	0	0	0	0	0	0	12315	1247	43	2		2	POLR2G	11	62533807	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	205996	62533807	72472709	1251	174395											
HRASLS2	54979	broad.mit.edu	37	chr11	63327591	63327591	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaccacatagccatctccCacgtagatggcccagtgtgc	10	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	63327591	A	A	63327591	2	1	229	1	0	0	0	0	0	0	0	1	7417	581	21	2		2	HRASLS2	11	63327591	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	793784	63327591	71678925	1252	174396											
PYGM	5837	broad.mit.edu	37	chr11	64521067	64521068	+	Missense_Mutation	DNP	CC	AT	AT													ccccgcgatgcacaggtgtgCcatgttgatgcgcttcactg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	64521068	AT	AT	64521067	3	1	229	1	0	0	0	0	1	0	0	0	12970	739	26	3	1241	3	PYGM	11	64521067	Missense_Mutation	DNP	CC	TCGA-91-6836-01A-21D-1855-08	1193476	64521067	70485449	1253	174397											
MEN1	4221	broad.mit.edu	37	chr11	64574664	64574664	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgacctttccagatgtcCcaggtcatagagcagccaga	9	12	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	64574664	A	A	64574664	4	1	229	1	0	0	0	0	0	1	0	0	9565	632	22	2	1045	2	MEN1	11	64574664	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	53597	64574664	70431852	1254	174398											
CAPN1	823	broad.mit.edu	37	chr11	64950964	64950964	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggactgctggctcttggcGgccatcgcctccctcactct	12	16	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	64950964	T	T	64950964	2	4	229	1	0	0	0	0	0	0	0	1	2648	1103	39	1		1	CAPN1	11	64950964	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	376300	64950964	70055552	1255	174399											
SCYL1	57410	broad.mit.edu	37	chr11	65303696	65303696	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggtaggttcttgggaaccCcagagaccccagctctgcct	11	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65303696	A	A	65303696	1	1	229	0	1	0	0	0	0	0	0	0	14060	638	22	2		2	SCYL1	11	65303696	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	352732	65303696	69702820	1256	174400											
LTBP3	4054	broad.mit.edu	37	chr11	65308247	65308247	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgggcggggcttacccgGcgcgggcagctgacccagcg	19	14	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65308247	C	C	65308247	1	2	229	0	1	0	0	0	0	0	0	0	9162	1218	42	4		4	LTBP3	11	65308247	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4551	65308247	69698269	1257	174401											
SIPA1	6494	broad.mit.edu	37	chr11	65417544	65417544	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggccaccagggtgctgcGgtaagcctgggcagtgctct	16	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65417544	T	T	65417544	1	4	229	0	1	0	0	0	0	0	0	0	14441	1131	39	1		1	SIPA1	11	65417544	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	109297	65417544	69588972	1258	174402											
MUS81	80198	broad.mit.edu	37	chr11	65629749	65629749	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgctcagaagtcccccaGggtgagcacagggatcaggg	16	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65629749	A	A	65629749	3	1	229	1	0	0	0	0	1	0	0	0	10082	1014	35	4	536	4	MUS81	11	65629749	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	212205	65629749	69376767	1259	174403											
SF3B2	10992	broad.mit.edu	37	chr11	65827286	65827286	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgatgtcgtggagatgcacGatgtgacagcgcaggaccct	14	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	65827286	C	C	65827286	3	2	229	1	0	0	0	0	1	0	0	0	14264	1058	37	4	1485	4	SF3B2	11	65827286	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	197537	65827286	69179230	1260	174404											
ACY3	91703	broad.mit.edu	37	chr11	67412464	67412464	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggctccccaacccctgagCcagacctgctcttccccgga	8	20	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67412464	A	A	67412464	1	1	229	0	1	0	0	0	0	0	0	0	227	754	26	3		3	ACY3	11	67412464	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1585178	67412464	67594052	1261	174405											
TCIRG1	10312	broad.mit.edu	37	chr11	67815465	67815465	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgggatggagtgtccgtGggtggtgaaggcagctggga	20	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67815465	T	T	67815465	1	4	229	0	1	0	0	0	0	0	0	0	15825	1363	47	2		2	TCIRG1	11	67815465	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	403001	67815465	67191051	1262	174406											
NADSYN1	55191	broad.mit.edu	37	chr11	71202082	71202082	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctcccagcacggcccCggccaccctggcccacactc	7	24	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	71202082	A	A	71202082	1	1	229	0	1	0	0	0	0	0	0	0	10232	667	23	1		1	NADSYN1	11	71202082	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3386617	71202082	63804434	1263	174407											
CLPB	81570	broad.mit.edu	37	chr11	72006461	72006461	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcacctgggcccagggccCcaatcccatccttccccagg	8	20	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72006461	T	T	72006461	1	4	229	0	1	0	0	0	0	0	0	0	3583	638	22	4		4	CLPB	11	72006461	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	804379	72006461	63000055	1264	174408											
MAP6	4135	broad.mit.edu	37	chr11	75353801	75353801	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtatagctggaatgccAaggctaaaagctgaaatact	10	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	75353801	T	T	75353801	1	4	229	0	1	0	0	0	0	0	0	0	9356	145	5	5		5	MAP6	11	75353801	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	3347340	75353801	59652715	1265	174409											
LRRC32	2615	broad.mit.edu	37	chr11	76372166	76372166	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcgagtcagactgttctcCgccagtgagagggtatgcag	15	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76372166	A	A	76372166	2	1	229	1	0	0	0	0	0	0	0	1	9074	639	23	1		1	LRRC32	11	76372166	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1018365	76372166	58634350	1266	174410											
ACER3	55331	broad.mit.edu	37	chr11	76727691	76727691	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaaatattttaaaaatttaAcgtgattttctccctctctc	2	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	76727691	G	G	76727691	1	3	229	0	1	0	0	0	0	0	0	0	140	58	2	5		5	ACER3	11	76727691	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	355525	76727691	58278825	1267	174411											
MYO7A	4647	broad.mit.edu	37	chr11	76873964	76873964	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacgccaactacatcccCcccaagaacaaccatgagac	4	18	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76873964	A	A	76873964	2	1	229	1	0	0	0	0	0	0	0	1	10176	610	22	2		2	MYO7A	11	76873964	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	146273	76873964	58132552	1268	174412											
GDPD4	220032	broad.mit.edu	37	chr11	76979488	76979488	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctcccctcaccccagttCcctgctttcttaccttaagt	3	19	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76979488	A	A	76979488	1	1	229	0	1	0	0	0	0	0	0	0	6390	870	30	3		3	GDPD4	11	76979488	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	105524	76979488	58027028	1269	174413											
GDPD4	220032	broad.mit.edu	37	chr11	76982254	76982254	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttatgctgaccaggtgcacGtagggagcaaagatctgtga	14	7	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	76982254	T	T	76982254	4	4	229	1	0	0	0	0	0	1	0	0	6390	1140	40	3	1285	3	GDPD4	11	76982254	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2766	76982254	58024262	1270	174414											
RSF1	51773	broad.mit.edu	37	chr11	77524598	77524598	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagattctttgcctctgctCctctgatgaagtcagcacac	9	12	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77524598	A	A	77524598	1	1	229	0	1	0	0	0	0	0	0	0	13810	870	30	3		3	RSF1	11	77524598	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	542344	77524598	57481918	1271	174415											
INTS4	92105	broad.mit.edu	37	chr11	77705770	77705770	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaaacttgcgtaggcgcGgggggtgggtggatgacttg	20	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	77705770	T	T	77705770	1	4	229	0	1	0	0	0	0	0	0	0	7850	1131	39	1		1	INTS4	11	77705770	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	181172	77705770	57300746	1272	174416											
SYTL2	54843	broad.mit.edu	37	chr11	85420374	85420374	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactctaaaatgtacttacGggtctgaacgctgttttttt	8	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85420374	T	T	85420374	3	4	229	1	0	0	0	0	1	0	0	0	15602	1130	39	1	832	1	SYTL2	11	85420374	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	7714604	85420374	49586142	1273	174417											
PICALM	8301	broad.mit.edu	37	chr11	85685775	85685775	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgatacagggccaaaGgggtttggaggtctcatgac	14	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85685775	T	T	85685775	2	4	229	1	0	0	0	0	0	0	0	1	11975	987	35	2		2	PICALM	11	85685775	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	265401	85685775	49320741	1274	174418											
FAT3	120114	broad.mit.edu	37	chr11	92592184	92592184	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	atggaaaactggtttttaatCaaaaatgatttctcctcatt	5	6	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92592184	A	A	92592184	1	1	229	0	1	0	0	0	0	0	0	0	5748	841	29	3		3	FAT3	11	92592184	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	6906409	92592184	42414332	1275	174419											
MED17	9440	broad.mit.edu	37	chr11	93528177	93528177	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgttcaaattaaatcacaAgtccctcacattgtggtgaa	7	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93528177	T	T	93528177	3	4	229	1	0	0	0	0	1	0	0	0	9528	69	3	5	985	5	MED17	11	93528177	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	935993	93528177	41478339	1276	174420											
PIWIL4	143689	broad.mit.edu	37	chr11	94316700	94316700	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctgccatcaagttctccCgtgtgcatccaggtcttcaa	9	13	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94316700	A	A	94316700	2	1	229	1	0	0	0	0	0	0	0	1	12055	639	23	1		1	PIWIL4	11	94316700	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	788523	94316700	40689816	1277	174421											
MTMR2	8898	broad.mit.edu	37	chr11	95569288	95569288	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcatgaatgaaaactccCattgtatattgtaaggcaca	7	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95569288	A	A	95569288	1	1	229	0	1	0	0	0	0	0	0	0	10038	609	21	2		2	MTMR2	11	95569288	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1252588	95569288	39437228	1278	174422											
GRIA4	2893	broad.mit.edu	37	chr11	105758306	105758306	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cattgcaaacttggtaagaaCttcttattttctacttttca	4	8	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105758306	A	A	105758306	1	1	229	0	1	0	0	0	0	0	0	0	6836	580	20	3		3	GRIA4	11	105758306	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	10189018	105758306	29248210	1279	174423											
ELMOD1	55531	broad.mit.edu	37	chr11	107521059	107521059	+	Splice_Site	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctttccctcccgctgcAggtatttcgcggaaagggat	10	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	107521059	G	G	107521059	5	3	229	1	0	0	0	0	0	0	1	0	5110	202	7	5	579	5	ELMOD1	11	107521059	Splice_Site	SNP	A	TCGA-91-6836-01A-21D-1855-08	1762753	107521059	27485457	1280	174424											
ATM	472	broad.mit.edu	37	chr11	108127013	108127013	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggctgctactgttacatGggtgtaatagctgaagagga	13	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108127013	T	T	108127013	3	4	229	1	0	0	0	0	1	0	0	0	1113	1348	47	2	2246	2	ATM	11	108127013	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	605954	108127013	26879503	1281	174425											
ARHGAP20	57569	broad.mit.edu	37	chr11	110462822	110462822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaggtgagtgctagaacctCgccagaaggcccagtttatg	12	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110462822	A	A	110462822	3	1	229	1	0	0	0	0	1	0	0	0	872	884	31	3	2577	3	ARHGAP20	11	110462822	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2335809	110462822	24543694	1282	174426											
DRD2	1813	broad.mit.edu	37	chr11	113286089	113286089	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgagcataagatgagccctCttggtaatggttaggtgggg	15	6	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113286089	A	A	113286089	1	1	229	0	1	0	0	0	0	0	0	0	4797	928	32	3		3	DRD2	11	113286089	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2823267	113286089	21720427	1283	174427											
VPS11	55823	broad.mit.edu	37	chr11	118951866	118951866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttggagttgccctcagtcCacttcctgtgtggccactcc	9	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118951866	A	A	118951866	3	1	229	1	0	0	0	0	1	0	0	0	17315	594	21	2	2560	2	VPS11	11	118951866	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5665777	118951866	16054650	1284	174428											
CRTAM	56253	broad.mit.edu	37	chr11	122733081	122733081	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acctctacaagcaggtagccGctaaatatattctccaatct	5	12	3	0	rs140238905	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122733081	A	A	122733081	1	1	229	0	1	0	0	0	0	0	0	0	3929	1102	38	4		4	CRTAM	11	122733081	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3781215	122733081	12273435	1285	174429											
GRAMD1B	57476	broad.mit.edu	37	chr11	123465532	123465532	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctacagcaacatcttcCgctgggaaactctggtaaag	9	11	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123465532	A	A	123465532	3	1	229	1	0	0	0	0	1	0	0	0	6814	652	23	1	448	1	GRAMD1B	11	123465532	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	732451	123465532	11540984	1286	174430											
OR8D4	338662	broad.mit.edu	37	chr11	123778066	123778066	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttttaagaagaaaaataTctttatctccaggataaata	4	5	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123778066	A	A	123778066	3	1	229	1	0	0	0	0	1	0	0	0	11327	1435	50	5	930	5	OR8D4	11	123778066	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	312534	123778066	11228450	1287	174431											
STT3A	3703	broad.mit.edu	37	chr11	125482995	125482995	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccattgtactatctgccCgtggtggggatggcagtagg	15	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125482995	A	A	125482995	3	1	229	1	0	0	0	0	1	0	0	0	15451	652	23	1	1523	1	STT3A	11	125482995	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1704929	125482995	9523521	1288	174432											
FAM118B	79607	broad.mit.edu	37	chr11	126081626	126081626	+	5'UTR	DEL	G	-	-													ccctgcaggtcacgtggtgcGgggtggggcctgggcgagtc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	126081626	-	-	126081626	6	5	229	0	1	1	0	1	0	0	0	0	5458	1131	39	0		0	FAM118B	11	126081626	5'UTR	DEL	G	TCGA-91-6836-01A-21D-1855-08	598631	126081626	8924890	1289	174433											
ETS1	2113	broad.mit.edu	37	chr11	128359340	128359340	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaattcattcacagccCacatcacccagtcccgaaca	6	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	128359340	A	A	128359340	3	1	229	1	0	0	0	0	1	0	0	0	5317	595	21	2	1101	2	ETS1	11	128359340	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2277714	128359340	6647176	1290	174434											
ARHGAP32	9743	broad.mit.edu	37	chr11	128839603	128839603	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaagcggtcctctccctcGggactgatggccttggctgc	13	13	1	2	rs79505038	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	128839603	T	T	128839603	2	4	229	1	0	0	0	0	0	0	0	1	883	1103	39	1		1	ARHGAP32	11	128839603	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	480263	128839603	6166913	1291	174435											
NTM	50863	broad.mit.edu	37	chr11	132177686	132177686	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaatgacgtggccgcgccCgtggtacggagagtaaaggt	15	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132177686	A	A	132177686	2	1	229	1	0	0	0	0	0	0	0	1	10794	639	23	1		1	NTM	11	132177686	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3338083	132177686	2828830	1292	174436											
NTM	50863	broad.mit.edu	37	chr11	132180091	132180091	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgaagcctcagcagtcccCtcagcagaattccagtggta	10	12	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	132180091	A	A	132180091	2	1	229	1	0	0	0	0	0	0	0	1	10794	668	24	2		2	NTM	11	132180091	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2405	132180091	2826425	1293	174437											
OPCML	4978	broad.mit.edu	37	chr11	132307167	132307167	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcgcagcgacatcgttcaAcgcgctgcattcgtactccc	11	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	132307167	C	C	132307167	3	2	229	1	0	0	0	0	1	0	0	0	10968	40	2	5	440	5	OPCML	11	132307167	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	127076	132307167	2699349	1294	174438											
NCAPD3	23310	broad.mit.edu	37	chr11	134090332	134090332	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatattccaataaattaacCacattctttatgttactcat	3	8	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134090332	A	A	134090332	1	1	229	0	1	0	0	0	0	0	0	0	10301	609	21	2		2	NCAPD3	11	134090332	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1783165	134090332	916184	1295	174439											
GLB1L2	89944	broad.mit.edu	37	chr11	134234322	134234322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccccagggaagctgcggccCgccctgctcagcggcctatg	14	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	134234322	A	A	134234322	1	1	229	0	1	0	0	0	0	0	0	0	6493	667	23	1		1	GLB1L2	11	134234322	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	143990	134234322	772194	1296	174440											
WNT5B	81029	broad.mit.edu	37	chr12	1740617	1740617	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggtgagtaagaggggctGaggtcctgcctgcacagccg	18	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1740617	T	T	1740617	1	4	229	0	1	0	0	0	0	0	0	0	17519	1305	45	3		3	WNT5B	12	1740617	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08		1740617	132111278	1297	174441											
WNT5B	81029	broad.mit.edu	37	chr12	1742120	1742120	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggaactgcactcgtctcGtttgggagcaattaagctct	10	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1742120	T	T	1742120	1	4	229	0	1	0	0	0	0	0	0	0	17519	1160	40	3		3	WNT5B	12	1742120	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1503	1742120	132109775	1298	174442											
CACNA1C	775	broad.mit.edu	37	chr12	2774822	2774822	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actggtccatccttggtcccCaccacctggatgagtttaaa	8	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2774822	A	A	2774822	3	1	229	1	0	0	0	0	1	0	0	0	2566	594	21	2	4942	2	CACNA1C	12	2774822	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1032702	2774822	131077073	1299	174443											
CACNA1C	775	broad.mit.edu	37	chr12	2788765	2788765	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcccacgagaagctggtGgactccaccttcaccccgag	9	17	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2788765	T	T	2788765	2	4	229	1	0	0	0	0	0	0	0	1	2566	1335	47	2		2	CACNA1C	12	2788765	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	13943	2788765	131063130	1300	174444											
USP5	8078	broad.mit.edu	37	chr12	6970341	6970341	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggaatgcttgggcacctCatgggagcacagcccaggga	16	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6970341	A	A	6970341	1	1	229	0	1	0	0	0	0	0	0	0	17208	841	29	3		3	USP5	12	6970341	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4181576	6970341	126881554	1301	174445											
PEX5	5830	broad.mit.edu	37	chr12	7343867	7343867	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatgcaccccttgtgtccCgtgcccctcagaccttcaag	8	16	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7343867	A	A	7343867	3	1	229	1	0	0	0	0	1	0	0	0	11843	652	23	1	284	1	PEX5	12	7343867	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	373526	7343867	126508028	1302	174446											
CD163L1	283316	broad.mit.edu	37	chr12	7522016	7522016	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtccccagggtttggcgtGacagtcccatagaaatgact	11	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7522016	T	T	7522016	3	4	229	1	0	0	0	0	1	0	0	0	2998	1290	45	3	405	3	CD163L1	12	7522016	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	178149	7522016	126329879	1303	174447											
CLEC6A	93978	broad.mit.edu	37	chr12	8618352	8618352	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cacattactgggtaacagatCtctagaactttttcatcttg	6	9	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8618352	A	A	8618352	1	1	229	0	1	0	0	0	0	0	0	0	3552	928	32	3		3	CLEC6A	12	8618352	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1096336	8618352	125233543	1304	174448											
A2ML1	144568	broad.mit.edu	37	chr12	9006870	9006870	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gttttcttcagaggtagagaCagcaaccaaccgagggatgc	12	9	2	2	rs112518877	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9006870	T	T	9006870	1	4	229	0	1	0	0	0	0	0	0	0	5	493	17	4		4	A2ML1	12	9006870	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	388518	9006870	124845025	1305	174449											
A2M	2	broad.mit.edu	37	chr12	9260230	9260230	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtccagggacaggcttccCatatgtgtatctgtcatgag	11	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	9260230	A	A	9260230	3	1	229	1	0	0	0	0	1	0	0	0	4	594	21	2	3771	2	A2M	12	9260230	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	253360	9260230	124591665	1306	174450											
CLEC1B	51266	broad.mit.edu	37	chr12	10145967	10145967	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcgtatagtagtttgaTgcaccaaatagagactgagg	11	7	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	10145967	C	C	10145967	1	2	229	0	1	0	0	0	0	0	0	0	3538	1479	51	5		5	CLEC1B	12	10145967	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	885737	10145967	123705928	1307	174451											
CLEC1B	51266	broad.mit.edu	37	chr12	10151776	10151776	+	5'UTR	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaactttacaatttcagtAtctgtcagtttatgatcttc	4	9	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	10151776	G	G	10151776	1	3	229	0	1	0	0	0	0	0	0	0	3538	464	16	5		5	CLEC1B	12	10151776	5'UTR	SNP	A	TCGA-91-6836-01A-21D-1855-08	5809	10151776	123700119	1308	174452											
TAS2R19	259294	broad.mit.edu	37	chr12	11175131	11175131	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagaacaaatgcaaacaCtaccagaattgatgaaatga	6	8	0	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	11175131	T	T	11175131	3	4	229	1	0	0	0	0	1	0	0	0	15689	565	20	4	862	4	TAS2R19	12	11175131	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1023355	11175131	122676764	1309	174453											
PDE3A	5139	broad.mit.edu	37	chr12	20522729	20522729	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggccgcctgctgcggggggGaagcgctcgtccagattggg	19	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20522729	T	T	20522729	4	4	229	1	0	0	0	0	0	1	0	0	11731	1175	41	3	513	3	PDE3A	12	20522729	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	9347598	20522729	113329166	1310	174454											
PDE3A	5139	broad.mit.edu	37	chr12	20704804	20704804	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaggaatgtaccatcatccCgtccaaccactacggaccca	6	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20704804	A	A	20704804	1	1	229	0	1	0	0	0	0	0	0	0	11731	667	23	1		1	PDE3A	12	20704804	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	182075	20704804	113147091	1311	174455											
SLCO1B3	28234	broad.mit.edu	37	chr12	21054390	21054390	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtaggatatataattcCgtattttttgggtaagttgt	10	3	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21054390	A	A	21054390	2	1	229	1	0	0	0	0	0	0	0	1	14838	639	23	1		1	SLCO1B3	12	21054390	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	349586	21054390	112797505	1312	174456											
C12orf39	80763	broad.mit.edu	37	chr12	21679749	21679749	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggtttataattgtccaGgcgtcaaggaaggaagcaga	15	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21679749	T	T	21679749	1	4	229	0	1	0	0	0	0	0	0	0	1697	1015	35	2		2	C12orf39	12	21679749	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	625359	21679749	112172146	1313	174457											
LDHB	3945	broad.mit.edu	37	chr12	21788499	21788499	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtcttttaggtccttctGgatgtcccacagggtatctg	11	10	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21788499	A	A	21788499	4	1	229	1	0	0	0	0	0	1	0	0	8773	1357	47	4	26	4	LDHB	12	21788499	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	108750	21788499	112063396	1314	174458											
ABCC9	10060	broad.mit.edu	37	chr12	21958111	21958111	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caatagatcatgatggtctaCttgttggtcatcaccaaagt	8	8	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21958111	A	A	21958111	3	1	229	1	0	0	0	0	1	0	0	0	59	564	20	3	148	3	ABCC9	12	21958111	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	169612	21958111	111893784	1315	174459											
ABCC9	10060	broad.mit.edu	37	chr12	22012585	22012585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattctctgcctctgtccccCactcaggttgatgccctaga	8	15	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22012585	A	A	22012585	3	1	229	1	0	0	0	0	1	0	0	0	59	594	21	2	2427	2	ABCC9	12	22012585	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	54474	22012585	111839310	1316	174460											
ABCC9	10060	broad.mit.edu	37	chr12	22035727	22035727	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgtcctctgtttctgcGggacgtagacgccgtgttga	13	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22035727	T	T	22035727	2	4	229	1	0	0	0	0	0	0	0	1	59	1103	39	1		1	ABCC9	12	22035727	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	23142	22035727	111816168	1317	174461											
ST8SIA1	6489	broad.mit.edu	37	chr12	22439382	22439382	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctaaaagatgtcttgGggaggccatgattcatttct	13	6	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22439382	T	T	22439382	1	4	229	0	1	0	0	0	0	0	0	0	15349	1247	43	2		2	ST8SIA1	12	22439382	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	403655	22439382	111412513	1318	174462											
ST8SIA1	6489	broad.mit.edu	37	chr12	22439445	22439445	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcctaagatctcccctccCcaaaactagggttccctaaa	5	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22439445	A	A	22439445	1	1	229	0	1	0	0	0	0	0	0	0	15349	638	22	2		2	ST8SIA1	12	22439445	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	63	22439445	111412450	1319	174463											
KIAA0528	9847	broad.mit.edu	37	chr12	22678520	22678520	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	cagttattacatttcctgttGagtaatagaatgtatttact	6	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22678520	T	T	22678520	1	4	229	0	1	0	0	0	0	0	0	0	8252	1305	45	3		3	KIAA0528	12	22678520	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	239075	22678520	111173375	1320	174464											
KRAS	3845	broad.mit.edu	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25398284	G	G	25398284	3	3	229	1	0	0	0	0	1	0	0	0	8509	507	18	4	671	4	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2719764	25398284	108453611	1321	174465											
IFLTD1	160492	broad.mit.edu	37	chr12	25678952	25678952	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagacacattgtataaaatAaaaagaataaaaaatacaga	4	3	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	25678952	G	G	25678952	1	3	229	0	1	0	0	0	0	0	0	0	7600	377	13	5		5	IFLTD1	12	25678952	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	280668	25678952	108172943	1322	174466											
IFLTD1	160492	broad.mit.edu	37	chr12	25706005	25706005	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaaagtgacctcacctGttaatccaactaccttcaag	4	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25706005	T	T	25706005	3	4	229	1	0	0	0	0	1	0	0	0	7600	1368	48	3	1267	3	IFLTD1	12	25706005	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	27053	25706005	108145890	1323	174467											
ITPR2	3709	broad.mit.edu	37	chr12	26868352	26868352	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaaaacttctcttgttcCgcatgaaataatctaacaac	4	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26868352	A	A	26868352	2	1	229	1	0	0	0	0	0	0	0	1	7991	639	23	1		1	ITPR2	12	26868352	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1162347	26868352	106983543	1324	174468											
PPFIBP1	8496	broad.mit.edu	37	chr12	27832504	27832504	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattcacagaggaacagtccCttccagataccgcctccatc	7	15	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27832504	A	A	27832504	2	1	229	1	0	0	0	0	0	0	0	1	12409	668	24	2		2	PPFIBP1	12	27832504	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	964152	27832504	106019391	1325	174469											
MRPS35	60488	broad.mit.edu	37	chr12	27877136	27877136	+	Intron	DEL	T	-	-													aagagtaagagtttttttcaTtttttttttttaaataagaa							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	27877136	-	-	27877136	6	5	229	0	1	1	0	1	0	0	0	0	9938	1508	52	0		0	MRPS35	12	27877136	Intron	DEL	T	TCGA-91-6836-01A-21D-1855-08	44632	27877136	105974759	1326	174470											
KLHDC5	57542	broad.mit.edu	37	chr12	27950603	27950603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtacagacttgcctagtGgtgttagtggaggcggtgtc	15	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27950603	T	T	27950603	1	4	229	0	1	0	0	0	0	0	0	0	8430	1363	47	2		2	KLHDC5	12	27950603	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	73467	27950603	105901292	1327	174471											
PTHLH	5744	broad.mit.edu	37	chr12	28116505	28116505	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgagttaggtatctgccCtcatcatcagacccaaatcg	7	13	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28116505	A	A	28116505	3	1	229	1	0	0	0	0	1	0	0	0	12867	680	24	2	245	2	PTHLH	12	28116505	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	165902	28116505	105735390	1328	174472											
FAR2	55711	broad.mit.edu	37	chr12	29464985	29464985	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcttatatggggagaaagAcaaaaagtaagtaaagagac	12	3	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	29464985	G	G	29464985	1	3	229	0	1	0	0	0	0	0	0	0	5732	290	10	5		5	FAR2	12	29464985	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1348480	29464985	104386910	1329	174473											
FAR2	55711	broad.mit.edu	37	chr12	29486519	29486519	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcttcagataatgtggttGggtatctggtagttttaact	10	4	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29486519	T	T	29486519	1	4	229	0	1	0	0	0	0	0	0	0	5732	1363	47	2		2	FAR2	12	29486519	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	21534	29486519	104365376	1330	174474											
OVCH1	341350	broad.mit.edu	37	chr12	29630180	29630180	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccctgtggaagcattgGggaaattcaaagtgaatggc	13	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29630180	T	T	29630180	1	4	229	0	1	0	0	0	0	0	0	0	11417	1247	43	2		2	OVCH1	12	29630180	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	143661	29630180	104221715	1331	174475											
TMTC1	83857	broad.mit.edu	37	chr12	29911708	29911708	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctgccaacgatcccagcCaccttggaagttaaaataat	7	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29911708	A	A	29911708	2	1	229	1	0	0	0	0	0	0	0	1	16383	581	21	2		2	TMTC1	12	29911708	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	281528	29911708	103940187	1332	174476											
IPO8	10526	broad.mit.edu	37	chr12	30823979	30823979	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcttgctgaagaacacGgggagctacatattctttct	10	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30823979	T	T	30823979	3	4	229	1	0	0	0	0	1	0	0	0	7868	1116	39	1	2220	1	IPO8	12	30823979	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	912271	30823979	103027916	1333	174477											
TSPAN11	441631	broad.mit.edu	37	chr12	31116703	31116703	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccctgtgggcactgaacGgatagcagctgccgaggccc	14	14	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31116703	T	T	31116703	1	4	229	0	1	0	0	0	0	0	0	0	16760	1131	39	1		1	TSPAN11	12	31116703	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	292724	31116703	102735192	1334	174478											
TSPAN11	441631	broad.mit.edu	37	chr12	31116966	31116966	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccacggtcagtgcccgccCtgtgctctgcagggatgggg	15	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31116966	A	A	31116966	1	1	229	0	1	0	0	0	0	0	0	0	16760	696	24	2		2	TSPAN11	12	31116966	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	263	31116966	102734929	1335	174479											
DENND5B	160518	broad.mit.edu	37	chr12	31540672	31540672	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatacattcgagtgatGgcaggacactcagctaacaa	8	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31540672	T	T	31540672	2	4	229	1	0	0	0	0	0	0	0	1	4477	1335	47	2		2	DENND5B	12	31540672	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	423706	31540672	102311223	1336	174480											
H3F3C	440093	broad.mit.edu	37	chr12	31944709	31944709	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttaagctctctctcccCgtatccggcgagccaactgg	8	16	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31944709	A	A	31944709	3	1	229	1	0	0	0	0	1	0	0	0	7001	652	23	1	19	1	H3F3C	12	31944709	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	404037	31944709	101907186	1337	174481											
FGD4	121512	broad.mit.edu	37	chr12	32793151	32793151	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggtttagtaggagcaagGgacacacttaacaagcgaat	12	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32793151	T	T	32793151	1	4	229	0	1	0	0	0	0	0	0	0	5892	1247	43	2		2	FGD4	12	32793151	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	848442	32793151	101058744	1338	174482											
YARS2	51067	broad.mit.edu	37	chr12	32902875	32902875	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttaaataatcttaccctcGgggaccatctggaatggcat	9	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32902875	T	T	32902875	2	4	229	1	0	0	0	0	0	0	0	1	17595	1124	39	1		1	YARS2	12	32902875	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	109724	32902875	100949020	1339	174483											
YARS2	51067	broad.mit.edu	37	chr12	32908083	32908083	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagttgatcagatccgccCagctggaccctgcatccata	8	15	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32908083	A	A	32908083	2	1	229	1	0	0	0	0	0	0	0	1	17595	581	21	2		2	YARS2	12	32908083	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	5208	32908083	100943812	1340	174484											
PKP2	5318	broad.mit.edu	37	chr12	32945618	32945618	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gttccgtgtgtgcccacagaGaatacagaaggacggaagca	13	9	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32945618	T	T	32945618	3	4	229	1	0	0	0	0	1	0	0	0	12080	942	33	3	116	3	PKP2	12	32945618	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	37535	32945618	100906277	1341	174485											
ALG10	84920	broad.mit.edu	37	chr12	34177038	34177038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttaatcttctcttcagtGttggcaacttctatttacta	5	8	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34177038	T	T	34177038	3	4	229	1	0	0	0	0	1	0	0	0	511	1377	48	3	319	3	ALG10	12	34177038	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1231420	34177038	99674857	1342	174486											
ALG10B	144245	broad.mit.edu	37	chr12	38712204	38712204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttaatcttctcttcagtGttggcaacttctatttacta	5	8	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38712204	T	T	38712204	3	4	229	1	0	0	0	0	1	0	0	0	512	1377	48	3	319	3	ALG10B	12	38712204	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4535166	38712204	95139691	1343	174487											
ABCD2	225	broad.mit.edu	37	chr12	40012821	40012821	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtttgccagcctcccatcCatattgatcactttataata	6	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40012821	T	T	40012821	3	4	229	1	0	0	0	0	1	0	0	0	61	594	21	4	1665	4	ABCD2	12	40012821	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1300617	40012821	93839074	1344	174488											
CNTN1	1272	broad.mit.edu	37	chr12	41386996	41386996	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggatggagtatgaattcCgcgtggtagcaaccaataca	11	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41386996	A	A	41386996	3	1	229	1	0	0	0	0	1	0	0	0	3672	652	23	1	2100	1	CNTN1	12	41386996	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1374175	41386996	92464899	1345	174489											
TMEM117	84216	broad.mit.edu	37	chr12	44238743	44238743	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttgtttggtaagtaccatGacccatgaaatgtaatatca	8	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44238743	T	T	44238743	1	4	229	0	1	0	0	0	0	0	0	0	16154	1305	45	3		3	TMEM117	12	44238743	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2851747	44238743	89613152	1346	174490											
NELL2	4753	broad.mit.edu	37	chr12	44917199	44917199	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggacatcgacaatcatatcCgccatccaaattgaagcaaa	6	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44917199	A	A	44917199	4	1	229	1	0	0	0	0	0	1	0	0	10429	661	23	1	593	1	NELL2	12	44917199	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	678456	44917199	88934696	1347	174491											
NELL2	4753	broad.mit.edu	37	chr12	45209725	45209725	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttaatatattcatttaaCcacatataatgaaaacacag	2	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45209725	T	T	45209725	1	4	229	0	1	0	0	0	0	0	0	0	10429	522	18	4		4	NELL2	12	45209725	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	292526	45209725	88642170	1348	174492											
PLEKHA9	51054	broad.mit.edu	37	chr12	45567503	45567503	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgccaagaatgcttctgTgggaatgccactgtcttcca	10	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45567503	C	C	45567503	3	2	229	1	0	0	0	0	1	0	0	0	12158	1696	59	5	533	5	PLEKHA9	12	45567503	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	357778	45567503	88284392	1349	174493											
HDAC7	51564	broad.mit.edu	37	chr12	48191840	48191840	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggctaacacgggggcGggggtggagggtgcatgtgg	21	7	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48191840	T	T	48191840	1	4	229	0	1	0	0	0	0	0	0	0	7079	1131	39	1		1	HDAC7	12	48191840	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2624337	48191840	85660055	1350	174494											
HDAC7	51564	broad.mit.edu	37	chr12	48191905	48191905	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttacctgtagggaatgccGgggctgttgggatggactgt	17	6	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48191905	T	T	48191905	2	4	229	1	0	0	0	0	0	0	0	1	7079	1103	39	1		1	HDAC7	12	48191905	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	65	48191905	85659990	1351	174495											
PFKM	5213	broad.mit.edu	37	chr12	48524199	48524199	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtatcttcaccggtgccCgtgtcttctttgtccatgag	10	11	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48524199	A	A	48524199	3	1	229	1	0	0	0	0	1	0	0	0	11860	652	23	1	366	1	PFKM	12	48524199	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	332294	48524199	85327696	1352	174496											
ADCY6	112	broad.mit.edu	37	chr12	49162750	49162750	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggggacccccgtgctgtcCatacgactagagacattcac	10	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49162750	A	A	49162750	3	1	229	1	0	0	0	0	1	0	0	0	298	594	21	2	163	2	ADCY6	12	49162750	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	638551	49162750	84689145	1353	174497											
MLL2	8085	broad.mit.edu	37	chr12	49432397	49432397	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccttcaggagccagtcgGtgggggtcctcacttacagg	14	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	49432397	T	T	49432397	3	4	229	1	0	0	0	0	1	0	0	0	9714	1252	44	3	7955	3	MLL2	12	49432397	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	269647	49432397	84419498	1354	174498											
RHEBL1	121268	broad.mit.edu	37	chr12	49460111	49460111	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcattccccgcattccCcaactccttacatcaaggct	3	20	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49460111	A	A	49460111	1	1	229	0	1	0	0	0	0	0	0	0	13438	638	22	2		2	RHEBL1	12	49460111	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	27714	49460111	84391784	1355	174499											
RHEBL1	121268	broad.mit.edu	37	chr12	49460377	49460377	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcaggttctcccaagtccCgcactcacaaccttggtcac	6	18	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49460377	A	A	49460377	1	1	229	0	1	0	0	0	0	0	0	0	13438	667	23	1		1	RHEBL1	12	49460377	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	266	49460377	84391518	1356	174500											
MCRS1	10445	broad.mit.edu	37	chr12	49953270	49953270	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaggtaccgcaccatgcggCcccgcagcactgccagtgtc	11	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49953270	A	A	49953270	3	1	229	1	0	0	0	0	1	0	0	0	9492	739	26	3	352	3	MCRS1	12	49953270	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	492893	49953270	83898625	1357	174501											
PRPF40B	25766	broad.mit.edu	37	chr12	50027294	50027294	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaccagagtaaagagtccCgctggacccggcccaaggat	11	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50027294	A	A	50027294	3	1	229	1	0	0	0	0	1	0	0	0	12678	652	23	1	504	1	PRPF40B	12	50027294	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	74024	50027294	83824601	1358	174502											
FMNL3	91010	broad.mit.edu	37	chr12	50047434	50047434	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcaatctggaggcaaatGggtcagctcaggattcctgg	13	9	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50047434	T	T	50047434	1	4	229	0	1	0	0	0	0	0	0	0	6011	1363	47	2		2	FMNL3	12	50047434	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	20140	50047434	83804461	1359	174503											
FMNL3	91010	broad.mit.edu	37	chr12	50047585	50047585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatcctccaacaaaccccCgacatcaaacacgttgtcca	4	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50047585	A	A	50047585	3	1	229	1	0	0	0	0	1	0	0	0	6011	652	23	1	1999	1	FMNL3	12	50047585	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	151	50047585	83804310	1360	174504											
FMNL3	91010	broad.mit.edu	37	chr12	50059885	50059885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actataaagggtggcaagacGgggactctctgcctcatact	11	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50059885	T	T	50059885	1	4	229	0	1	0	0	0	0	0	0	0	6011	1131	39	1		1	FMNL3	12	50059885	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	12300	50059885	83792010	1361	174505											
FAIM2	23017	broad.mit.edu	37	chr12	50294991	50294991	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcccctgccttcatcccctCcccagaggtggcttcctcat	8	19	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50294991	G	G	50294991	3	3	229	1	0	0	0	0	1	0	0	0	5422	864	30	4	861	4	FAIM2	12	50294991	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	235106	50294991	83556904	1362	174506											
LARP4	113251	broad.mit.edu	37	chr12	50794879	50794879	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagaggcgccggccggtccCaccgccatgtgactttccgg	14	15	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50794879	A	A	50794879	1	1	229	0	1	0	0	0	0	0	0	0	8702	609	21	2		2	LARP4	12	50794879	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	499888	50794879	83057016	1363	174507											
POU6F1	5463	broad.mit.edu	37	chr12	51589813	51589813	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acagccacaggtggaggcagGgggctgctagccagggtcgc	18	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51589813	A	A	51589813	2	1	229	1	0	0	0	0	0	0	0	1	12380	1219	43	4		4	POU6F1	12	51589813	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	794934	51589813	82262082	1364	174508											
SLC4A8	9498	broad.mit.edu	37	chr12	51890825	51890825	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atctctgtttctctaagcgaGagctgagctggctagatgat	11	8	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51890825	T	T	51890825	4	4	229	1	0	0	0	0	0	1	0	0	14773	943	33	3	3084	3	SLC4A8	12	51890825	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	301012	51890825	81961070	1365	174509											
ACVRL1	94	broad.mit.edu	37	chr12	52314696	52314696	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaggagcacctgattcCtttctgcctgcagggggctg	13	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52314696	A	A	52314696	1	1	229	0	1	0	0	0	0	0	0	0	225	696	24	2		2	ACVRL1	12	52314696	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	423871	52314696	81537199	1366	174510											
KRT7	3855	broad.mit.edu	37	chr12	52627069	52627069	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgccgctaggtccatcccGgcccagccaccatgtccatc	8	21	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52627069	T	T	52627069	1	4	229	0	1	0	0	0	0	0	0	0	8554	1131	39	1		1	KRT7	12	52627069	5'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	312373	52627069	81224826	1367	174511											
KRT7	3855	broad.mit.edu	37	chr12	52627423	52627424	+	Intron	DNP	CG	TC	TC													aggtgagcgggactggacctCgcctctcctcgagccgcgct							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TC	52627424	TC	TC	52627423	1	4	229	0	1	0	0	0	0	0	0	0	8554	899	31	4		4	KRT7	12	52627423	Intron	DNP	CG	TCGA-91-6836-01A-21D-1855-08	354	52627423	81224472	1368	174512											
KRT85	3891	broad.mit.edu	37	chr12	52758833	52758833	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccacgcactcggcctccCgccgcagagtctcgatgtag	10	18	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52758833	A	A	52758833	3	1	229	1	0	0	0	0	1	0	0	0	8570	652	23	1	1013	1	KRT85	12	52758833	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	131410	52758833	81093062	1369	174513											
KRT6B	3854	broad.mit.edu	37	chr12	52841489	52841489	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggccttgggcagtgcacCttaaagttgtgctcagtgcc	12	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52841489	T	T	52841489	1	4	229	0	1	0	0	0	0	0	0	0	8552	696	24	4		4	KRT6B	12	52841489	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	82656	52841489	81010406	1370	174514											
KRT76	51350	broad.mit.edu	37	chr12	53166491	53166491	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttgtgagtgttgtgctGtttggctgtcccctaaagtt	13	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53166491	T	T	53166491	1	4	229	0	1	0	0	0	0	0	0	0	8560	1392	48	3		3	KRT76	12	53166491	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	325002	53166491	80685404	1371	174515											
TENC1	23371	broad.mit.edu	37	chr12	53449016	53449016	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctgacccgcttaaaccCcaaggtatgaaggaaatggc	10	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53449016	A	A	53449016	3	1	229	1	0	0	0	0	1	0	0	0	15880	623	22	2	708	2	TENC1	12	53449016	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	282525	53449016	80402879	1372	174516											
SPRYD3	84926	broad.mit.edu	37	chr12	53473065	53473065	+	Intron	DEL	T	-	-													ctccggggagatacgaggccTccgggaccccgcccccgatc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	53473065	-	-	53473065	6	5	229	0	1	1	0	1	0	0	0	0	15227	1566	54	0		0	SPRYD3	12	53473065	Intron	DEL	T	TCGA-91-6836-01A-21D-1855-08	24049	53473065	80378830	1373	174517											
C12orf10	60314	broad.mit.edu	37	chr12	53696906	53696906	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gactcatctatctgcacttcGggcacaagctgctggcccag	10	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53696906	T	T	53696906	3	4	229	1	0	0	0	0	1	0	0	0	1687	1116	39	1	428	1	C12orf10	12	53696906	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	223841	53696906	80154989	1374	174518											
CALCOCO1	57658	broad.mit.edu	37	chr12	54115380	54115380	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctctcttctgtgatctccCcatgggaccgggaaatcccc	8	17	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54115380	A	A	54115380	3	1	229	1	0	0	0	0	1	0	0	0	2603	623	22	2	1486	2	CALCOCO1	12	54115380	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	418474	54115380	79736515	1375	174519											
CALCOCO1	57658	broad.mit.edu	37	chr12	54117619	54117619	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataatccactgtccttggccCcagccccttgctcggtgttc	8	16	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54117619	A	A	54117619	1	1	229	0	1	0	0	0	0	0	0	0	2603	638	22	2		2	CALCOCO1	12	54117619	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2239	54117619	79734276	1376	174520											
HOXC4	3221	broad.mit.edu	37	chr12	54422171	54422171	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctggcttgcgattggctggGagggggtcagctgactttgt	17	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54422171	T	T	54422171	1	4	229	0	1	0	0	0	0	0	0	0	7380	1189	41	3		3	HOXC4	12	54422171	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	304552	54422171	79429724	1377	174521											
CBX5	23468	broad.mit.edu	37	chr12	54639997	54639997	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccccgagcgatatcattgctCtgctataaatagaagataaa	7	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54639997	A	A	54639997	3	1	229	1	0	0	0	0	1	0	0	0	2747	912	32	3	256	3	CBX5	12	54639997	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	217826	54639997	79211898	1378	174522											
NCKAP1L	3071	broad.mit.edu	37	chr12	54936438	54936438	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcttcgaaatgcctatcGggaggtgtctcgggccttcc	12	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54936438	T	T	54936438	3	4	229	1	0	0	0	0	1	0	0	0	10317	1116	39	1	3475	1	NCKAP1L	12	54936438	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	296441	54936438	78915457	1379	174523											
DNAJC14	85406	broad.mit.edu	37	chr12	56188234	56188234	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actcctggtttgtctgtctcCgtgtcaagtatacatatgac	8	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56188234	A	A	56188234	1	1	229	0	1	0	0	0	0	0	0	0	4673	667	23	1		1	DNAJC14	12	56188234	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1251796	56188234	77663661	1380	174524											
MMP19	4327	broad.mit.edu	37	chr12	56232336	56232336	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	cccatttgtccaggcctcagGatcagcaggctgcccccacc	9	18	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56232336	T	T	56232336	1	4	229	0	1	0	0	0	0	0	0	0	9750	1189	41	3		3	MMP19	12	56232336	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	44102	56232336	77619559	1381	174525											
SILV	6490	broad.mit.edu	37	chr12	56348060	56348060	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacaagagcagaagatgcGgggtagacgcagccagtgac	17	8	0	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56348060	T	T	56348060	3	4	229	1	0	0	0	0	1	0	0	0	14435	1116	39	1	65	1	SILV	12	56348060	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	115724	56348060	77503835	1382	174526											
ERBB3	2065	broad.mit.edu	37	chr12	56491620	56491620	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatagaaacctggctgccCgaaacgtgctactcaagtca	9	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	56491620	A	A	56491620	2	1	229	1	0	0	0	0	0	0	0	1	5250	644	23	1		1	ERBB3	12	56491620	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	143560	56491620	77360275	1383	174527											
ESYT1	23344	broad.mit.edu	37	chr12	56531422	56531422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccggagccatgttgttcGggaagatctcaatccccgct	10	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56531422	T	T	56531422	3	4	229	1	0	0	0	0	1	0	0	0	5306	1116	39	1	2178	1	ESYT1	12	56531422	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	39802	56531422	77320473	1384	174528											
STAT2	6773	broad.mit.edu	37	chr12	56740394	56740394	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtacggttgcacagagtAgatgagcaccttgtctggag	14	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56740394	T	T	56740394	3	4	229	1	0	0	0	0	1	0	0	0	15383	420	15	5	695	5	STAT2	12	56740394	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	208972	56740394	77111501	1385	174529											
BAZ2A	11176	broad.mit.edu	37	chr12	57009183	57009183	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtgggtattgtcccccCgagaactgggagagaagggg	17	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57009183	A	A	57009183	2	1	229	1	0	0	0	0	0	0	0	1	1336	639	23	1		1	BAZ2A	12	57009183	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	268789	57009183	76842712	1386	174530											
MYO1A	4640	broad.mit.edu	37	chr12	57432273	57432273	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgaactgggccccagcagtCggggggcgtttgagagatgc	17	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57432273	A	A	57432273	2	1	229	1	0	0	0	0	0	0	0	1	10162	871	31	3		3	MYO1A	12	57432273	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	423090	57432273	76419622	1387	174531											
LRP1	4035	broad.mit.edu	37	chr12	57590052	57590052	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	actgtgaggacctcaagatcGgcttcaaggtatgcccagcc	11	12	2	2	rs144160982	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	57590052	C	C	57590052	3	2	229	1	0	0	0	0	1	0	0	0	9038	1116	39	4	9102	4	LRP1	12	57590052	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	157779	57590052	76261843	1388	174532											
STAC3	246329	broad.mit.edu	37	chr12	57642572	57642572	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagttcttacagcgaagccCaaacttgttgttgacttggg	11	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57642572	A	A	57642572	3	1	229	1	0	0	0	0	1	0	0	0	15359	594	21	2	781	2	STAC3	12	57642572	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	52520	57642572	76209323	1389	174533											
INHBE	83729	broad.mit.edu	37	chr12	57849974	57849974	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggctgcacgtgctcccCacccttcctggcactctttg	9	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	57849974	A	A	57849974	2	1	229	1	0	0	0	0	0	0	0	1	7814	581	21	2		2	INHBE	12	57849974	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	207402	57849974	76001921	1390	174534											
GLI1	2735	broad.mit.edu	37	chr12	57864343	57864343	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	tacttcgcccactgcagcatCcagcctggatcggataggtg	11	13	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57864343	T	T	57864343	3	4	229	1	0	0	0	0	1	0	0	0	6501	855	30	4	1862	4	GLI1	12	57864343	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	14369	57864343	75987552	1391	174535											
PIP4K2C	79837	broad.mit.edu	37	chr12	57995235	57995235	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaatggaggtggtctgGggtagattgggtgggggtga	21	1	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57995235	T	T	57995235	1	4	229	0	1	0	0	0	0	0	0	0	12033	1247	43	2		2	PIP4K2C	12	57995235	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	130892	57995235	75856660	1392	174536											
SLC26A10	65012	broad.mit.edu	37	chr12	58014271	58014271	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttccaatgactcttcttccCtatgggatgaaaatggacag	8	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58014271	A	A	58014271	1	1	229	0	1	0	0	0	0	0	0	0	14629	696	24	2		2	SLC26A10	12	58014271	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	19036	58014271	75837624	1393	174537											
OS9	10956	broad.mit.edu	37	chr12	58110011	58110011	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctgttccgtgaaactcaCttccatttcttcccttcccc	3	18	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58110011	T	T	58110011	1	4	229	0	1	0	0	0	0	0	0	0	11366	580	20	4		4	OS9	12	58110011	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	95740	58110011	75741884	1394	174538											
OS9	10956	broad.mit.edu	37	chr12	58111706	58111706	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gaagccctgcggatttgattCgattcatagaggagctgaaa	12	7	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58111706	A	A	58111706	2	1	229	1	0	0	0	0	0	0	0	1	11366	876	31	3		3	OS9	12	58111706	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1695	58111706	75740189	1395	174539											
AVIL	10677	broad.mit.edu	37	chr12	58207158	58207158	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctgggaggagtccttccCgatccagaagtggatgtcct	12	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	58207158	A	A	58207158	3	1	229	1	0	0	0	0	1	0	0	0	1232	652	23	1	2337	1	AVIL	12	58207158	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	95452	58207158	75644737	1396	174540											
LEMD3	23592	broad.mit.edu	37	chr12	65609716	65609716	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	aattatttggtgttttttttCttgtaattgggtatttcata	7	2	2	0	rs67750677		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65609716	T	T	65609716	1	4	229	0	1	0	0	0	0	0	0	0	8793	928	32	4		4	LEMD3	12	65609716	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7402558	65609716	68242179	1397	174541											
IRAK3	11213	broad.mit.edu	37	chr12	66641794	66641794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgaagaaagttggttccCaaagtatatagttccatccc	8	8	0	2	rs150402157		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66641794	A	A	66641794	3	1	229	1	0	0	0	0	1	0	0	0	7894	594	21	2	1680	2	IRAK3	12	66641794	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1032078	66641794	67210101	1398	174542											
BEST3	144453	broad.mit.edu	37	chr12	70049062	70049062	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaggatggatcccatgggGccctgctgctgctcagtctt	13	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70049062	A	A	70049062	2	1	229	1	0	0	0	0	0	0	0	1	1411	1190	42	4		4	BEST3	12	70049062	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3407268	70049062	63802833	1399	174543											
PTPRB	5787	broad.mit.edu	37	chr12	70980746	70980746	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttaaatagtaattcagcaGacagaacactttaaaatgta	6	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70980746	T	T	70980746	1	4	229	0	1	0	0	0	0	0	0	0	12904	957	33	3		3	PTPRB	12	70980746	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	931684	70980746	62871149	1400	174544											
ZFC3H1	196441	broad.mit.edu	37	chr12	72004128	72004128	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttacacagaccttagccaGggatcagcctaatcttgaag	8	12	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72004128	T	T	72004128	1	4	229	0	1	0	0	0	0	0	0	0	17759	1015	35	2		2	ZFC3H1	12	72004128	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	1023382	72004128	61847767	1401	174545											
ZFC3H1	196441	broad.mit.edu	37	chr12	72004453	72004453	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggaaaacatcgagataaAataaaagataaaaagcatta	6	4	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72004453	G	G	72004453	1	3	229	0	1	0	0	0	0	0	0	0	17759	29	1	5		5	ZFC3H1	12	72004453	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	325	72004453	61847442	1402	174546											
TBC1D15	64786	broad.mit.edu	37	chr12	72290454	72290454	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaatatgtatgctttcttCagggacttagtcatgcattg	8	6	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72290454	T	T	72290454	1	4	229	0	1	0	0	0	0	0	0	0	15723	841	29	4		4	TBC1D15	12	72290454	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	286001	72290454	61561441	1403	174547											
TRHDE	29953	broad.mit.edu	37	chr12	72667414	72667414	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcggcctgcgaccccggGgacccagctggcttccaata	14	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72667414	A	A	72667414	1	1	229	0	1	0	0	0	0	0	0	0	16603	1247	43	4		4	TRHDE	12	72667414	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	376960	72667414	61184481	1404	174548											
NAV3	89795	broad.mit.edu	37	chr12	78334765	78334765	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaggagcatttttgcttgGtattttttttttcctgtttt	8	5	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78334765	A	A	78334765	1	1	229	0	1	0	0	0	0	0	0	0	10279	1276	44	4		4	NAV3	12	78334765	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	5667351	78334765	55517130	1405	174549											
NAV3	89795	broad.mit.edu	37	chr12	78334793	78334793	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcctgttttcgtgtgtGtgtttcacttcattgcttaa	7	7	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78334793	T	T	78334793	1	4	229	0	1	0	0	0	0	0	0	0	10279	1392	48	3		3	NAV3	12	78334793	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	28	78334793	55517102	1406	174550											
NAV3	89795	broad.mit.edu	37	chr12	78400496	78400496	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaattcaagctagtcaatgCccggactgctttacgccccc	8	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	78400496	G	G	78400496	3	3	229	1	0	0	0	0	1	0	0	0	10279	739	26	4	1208	4	NAV3	12	78400496	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	65703	78400496	55451399	1407	174551											
NAV3	89795	broad.mit.edu	37	chr12	78522444	78522444	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctggcattgccttgccCttgtagatgtgcttaagtgt	11	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78522444	A	A	78522444	1	1	229	0	1	0	0	0	0	0	0	0	10279	696	24	2		2	NAV3	12	78522444	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	121948	78522444	55329451	1408	174552											
TMTC2	160335	broad.mit.edu	37	chr12	83289719	83289719	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttccaactcggacaacccCgctgctgattcggacagcct	8	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	83289719	A	A	83289719	2	1	229	1	0	0	0	0	0	0	0	1	16384	639	23	1		1	TMTC2	12	83289719	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	4767275	83289719	50562176	1409	174553											
TMTC2	160335	broad.mit.edu	37	chr12	83359605	83359605	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtaacctacagcctcctttGagcctatgtcctttgaacaa	6	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83359605	T	T	83359605	1	4	229	0	1	0	0	0	0	0	0	0	16384	1305	45	3		3	TMTC2	12	83359605	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	69886	83359605	50492290	1410	174554											
SLC6A15	55117	broad.mit.edu	37	chr12	85277886	85277886	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgcgacaatttcttttccAataaacctgtaagtgaattc	5	8	1	1	rs139016624		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85277886	T	T	85277886	1	4	229	0	1	0	0	0	0	0	0	0	14792	145	5	5		5	SLC6A15	12	85277886	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1918281	85277886	48574009	1411	174555											
LRRIQ1	84125	broad.mit.edu	37	chr12	85521615	85521615	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcctcttaatagtatggCagctgtggtaatccagtcat	8	9	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85521615	T	T	85521615	3	4	229	1	0	0	0	0	1	0	0	0	9116	710	25	4	4083	4	LRRIQ1	12	85521615	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	243729	85521615	48330280	1412	174556											
TMTC3	160418	broad.mit.edu	37	chr12	88570021	88570021	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaactttggaataatgtgGgtcatgctctggaaaatgaa	10	6	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	88570021	T	T	88570021	3	4	229	1	0	0	0	0	1	0	0	0	16385	1232	43	2	1391	2	TMTC3	12	88570021	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3048406	88570021	45281874	1413	174557											
MRPL42	28977	broad.mit.edu	37	chr12	93870766	93870766	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtcataaatctacgtAttctcctctaccagatgact	5	10	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	93870766	T	T	93870766	3	4	229	1	0	0	0	0	1	0	0	0	9900	449	16	5	137	5	MRPL42	12	93870766	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	5300745	93870766	39981129	1414	174558											
PLXNC1	10154	broad.mit.edu	37	chr12	94542933	94542933	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgtttgtggcgagcggCagctgcctggaccagctgga	18	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	94542933	T	T	94542933	2	4	229	1	0	0	0	0	0	0	0	1	12221	697	25	4		4	PLXNC1	12	94542933	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	672167	94542933	39308962	1415	174559											
CCDC41	51134	broad.mit.edu	37	chr12	94761621	94761621	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgccatctgtgaagccCgcaatttctcttcatactga	6	13	4	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94761621	A	A	94761621	3	1	229	1	0	0	0	0	1	0	0	0	2840	652	23	1	841	1	CCDC41	12	94761621	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	218688	94761621	39090274	1416	174560											
NTN4	59277	broad.mit.edu	37	chr12	96107010	96107010	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgcactcgttgggagccCccgttttgccatcagctgcc	10	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96107010	A	A	96107010	3	1	229	1	0	0	0	0	1	0	0	0	10797	623	22	2	943	2	NTN4	12	96107010	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1345389	96107010	37744885	1417	174561											
NEDD1	121441	broad.mit.edu	37	chr12	97311450	97311450	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catctatgtatttggtaagcGgaggcctaaataacactgtt	9	7	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	97311450	T	T	97311450	4	4	229	1	0	0	0	0	0	1	0	0	10404	1117	39	1	318	1	NEDD1	12	97311450	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1204440	97311450	36540445	1418	174562											
IGF1	3479	broad.mit.edu	37	chr12	102796285	102796285	+	Nonstop_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactcctcaggagggtcttcCtacatcctgtagttcttgtt	8	12	3	0	rs115707403	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102796285	A	A	102796285	4	1	229	1	0	0	0	0	0	0	0	0	7640	692	24	2	3	2	IGF1	12	102796285	Nonstop_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5484835	102796285	31055610	1419	174563											
STAB2	55576	broad.mit.edu	37	chr12	104067855	104067855	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctgtgaatacagcaatGggacagccaggtaggtctgt	12	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104067855	T	T	104067855	3	4	229	1	0	0	0	0	1	0	0	0	15356	1348	47	2	2632	2	STAB2	12	104067855	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1271570	104067855	29784040	1420	174564											
STAB2	55576	broad.mit.edu	37	chr12	104151856	104151856	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tggctcacaccatgaatattCacagatgggtgatgccctgg	11	10	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	104151856	G	G	104151856	1	3	229	0	1	0	0	0	0	0	0	0	15356	841	29	4		4	STAB2	12	104151856	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	84001	104151856	29700039	1421	174565											
TDG	6996	broad.mit.edu	37	chr12	104380778	104380778	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtggcattcctaatggGcagtggatgacccagtcatt	11	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	104380778	T	T	104380778	2	4	229	1	0	0	0	0	0	0	0	1	15847	1190	42	3		3	TDG	12	104380778	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	228922	104380778	29471117	1422	174566											
RFX4	5992	broad.mit.edu	37	chr12	107144439	107144439	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgcattttagatacacGggaagctataactatgggag	11	5	0	2	rs141950761	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	107144439	T	T	107144439	2	4	229	1	0	0	0	0	0	0	0	1	13373	1103	39	1		1	RFX4	12	107144439	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2763661	107144439	26707456	1423	174567											
BTBD11	121551	broad.mit.edu	37	chr12	108011012	108011012	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctccagtgcaccctggccCttgaagtgcctgtgactata	10	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108011012	A	A	108011012	1	1	229	0	1	0	0	0	0	0	0	0	1548	696	24	2		2	BTBD11	12	108011012	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	866573	108011012	25840883	1424	174568											
PWP1	11137	broad.mit.edu	37	chr12	108079764	108079764	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaaggtgaggcctggtcgcTgggagacaaggggagcagcg	19	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108079764	A	A	108079764	1	1	229	0	1	0	0	0	0	0	0	0	12951	1595	55	5		5	PWP1	12	108079764	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	68752	108079764	25772131	1425	174569											
WSCD2	9671	broad.mit.edu	37	chr12	108642021	108642021	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatgacccctatactgcGgacatgcagaagaccatctc	9	12	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	108642021	T	T	108642021	2	4	229	1	0	0	0	0	0	0	0	1	17534	1103	39	1		1	WSCD2	12	108642021	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	562257	108642021	25209874	1426	174570											
DAO	1610	broad.mit.edu	37	chr12	109286889	109286889	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgctgctgagtcggggGctcccttctcaggctcctag	12	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	109286889	T	T	109286889	1	4	229	0	1	0	0	0	0	0	0	0	4264	1218	42	3		3	DAO	12	109286889	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	644868	109286889	24565006	1427	174571											
UBE3B	89910	broad.mit.edu	37	chr12	109921558	109921558	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacatgattctctggctcCcaattaatagcagataaatg	7	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109921558	A	A	109921558	1	1	229	0	1	0	0	0	0	0	0	0	17006	638	22	2		2	UBE3B	12	109921558	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	634669	109921558	23930337	1428	174572											
TRPV4	59341	broad.mit.edu	37	chr12	110236392	110236392	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	aggggtacgagtaggtggatCagctgtgcccccagccgcac	15	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110236392	A	A	110236392	1	1	229	0	1	0	0	0	0	0	0	0	16723	841	29	3		3	TRPV4	12	110236392	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	314834	110236392	23615503	1429	174573											
GIT2	9815	broad.mit.edu	37	chr12	110426805	110426805	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtcacactatcgtcatccCggcagggcaagcgatggacg	12	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	110426805	A	A	110426805	3	1	229	1	0	0	0	0	1	0	0	0	6461	652	23	1	2017	1	GIT2	12	110426805	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	190413	110426805	23425090	1430	174574											
TCTN1	79600	broad.mit.edu	37	chr12	111079365	111079365	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaatacccagccagtcCctctcagtggaaaccctggt	9	13	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111079365	A	A	111079365	3	1	229	1	0	0	0	0	1	0	0	0	15844	623	22	2	1333	2	TCTN1	12	111079365	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	652560	111079365	22772530	1431	174575											
CCDC63	160762	broad.mit.edu	37	chr12	111291171	111291171	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggcttctctagccacctgGcccactacggcctcccactc	8	19	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	111291171	C	C	111291171	1	2	229	0	1	0	0	0	0	0	0	0	2862	1218	42	4		4	CCDC63	12	111291171	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	211806	111291171	22560724	1432	174576											
CCDC63	160762	broad.mit.edu	37	chr12	111317665	111317665	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttctggtagcttatcttaCaaaacagaaatgagacctgt	7	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	111317665	T	T	111317665	1	4	229	0	1	0	0	0	0	0	0	0	2862	493	17	4		4	CCDC63	12	111317665	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	26494	111317665	22534230	1433	174577											
SH2B3	10019	broad.mit.edu	37	chr12	111885811	111885811	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaacacggtcctcttccCtttctcccttcctcactggg	6	18	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	111885811	A	A	111885811	3	1	229	1	0	0	0	0	1	0	0	0	14342	681	24	2	1459	2	SH2B3	12	111885811	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	568146	111885811	21966084	1434	174578											
ACAD10	80724	broad.mit.edu	37	chr12	112185277	112185278	+	Intron	INS	-	T	T													tgcctgggaggagcctctgcINStttttcaagttgacacaaag							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	112185278	T	T	112185277	6	5	229	0	1	1	1	0	0	0	0	0	108	812	28	0		0	ACAD10	12	112185277	Intron	INS	-	TCGA-91-6836-01A-21D-1855-08	299466	112185277	21666618	1435	174579											
C12orf51	283450	broad.mit.edu	37	chr12	112638548	112638548	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaataggataccagtatcGcaccagcacaccttcactgc	7	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112638548	A	A	112638548	4	1	229	1	0	0	0	0	0	1	0	0	1709	1095	38	4	4883	4	C12orf51	12	112638548	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	453271	112638548	21213347	1436	174580											
C12orf51	283450	broad.mit.edu	37	chr12	112650362	112650362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atatggtgagaggcgctgccCgcagtatgtgaagtacaccc	13	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112650362	A	A	112650362	3	1	229	1	0	0	0	0	1	0	0	0	1709	652	23	1	5810	1	C12orf51	12	112650362	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	11814	112650362	21201533	1437	174581											
RPH3A	22895	broad.mit.edu	37	chr12	113325493	113325493	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacaggaaatcatattattTccacatacattacacattcc	2	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	113325493	A	A	113325493	1	1	229	0	1	0	0	0	0	0	0	0	13662	1798	62	5		5	RPH3A	12	113325493	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	675131	113325493	20526402	1438	174582											
SLC24A6	80024	broad.mit.edu	37	chr12	113737668	113737669	+	Frame_Shift_Ins	INS	-	AT	AT													aagaggagcaggcagaagccINSatagactctgctgagctgga					rs144434177		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AT	113737669	AT	AT	113737668	7	5	229	1	0	1	1	0	0	0	0	0	14584	594	21	0	89	0	SLC24A6	12	113737668	Frame_Shift_Ins	INS	-	TCGA-91-6836-01A-21D-1855-08	412175	113737668	20114227	1439	174583											
RBM19	9904	broad.mit.edu	37	chr12	114386746	114386746	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcctcttcgttctcccCgagtatccggccttgccagg	8	18	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114386746	A	A	114386746	3	1	229	1	0	0	0	0	1	0	0	0	13229	652	23	1	1774	1	RBM19	12	114386746	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	649078	114386746	19465149	1440	174584											
MED13L	23389	broad.mit.edu	37	chr12	116424999	116424999	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttctcccaggtcctgccCgtgcgcttcttttggatggc	11	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	116424999	A	A	116424999	2	1	229	1	0	0	0	0	0	0	0	1	9524	639	23	1		1	MED13L	12	116424999	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2038253	116424999	17426896	1441	174585											
KSR2	283455	broad.mit.edu	37	chr12	118199277	118199277	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acgggattgttctccttcccCgtctctgtcgtgggccactg	11	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118199277	A	A	118199277	2	1	229	1	0	0	0	0	0	0	0	1	8654	639	23	1		1	KSR2	12	118199277	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1774278	118199277	15652618	1442	174586											
TAOK3	51347	broad.mit.edu	37	chr12	118682716	118682716	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctcatgggtctgcttccCactataggacatcttcttaa	6	13	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118682716	A	A	118682716	3	1	229	1	0	0	0	0	1	0	0	0	15668	594	21	2	2593	2	TAOK3	12	118682716	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	483439	118682716	15169179	1443	174587											
DYNLL1	8655	broad.mit.edu	37	chr12	120936037	120936037	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catggactgtgccacacaccCagtgatccatccaaaaacaa	6	14	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120936037	A	A	120936037	1	1	229	0	1	0	0	0	0	0	0	0	4888	609	21	2		2	DYNLL1	12	120936037	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	2253321	120936037	12915858	1444	174588											
COQ5	84274	broad.mit.edu	37	chr12	120954501	120954501	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actctttggcaatttcttccCaggataaattttgttgggcc	8	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	120954501	A	A	120954501	3	1	229	1	0	0	0	0	1	0	0	0	3780	595	21	2	560	2	COQ5	12	120954501	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	18464	120954501	12897394	1445	174589											
RNF10	9921	broad.mit.edu	37	chr12	121001235	121001235	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctagacctcttgctctccCtctggtagaagaggaggaag	11	10	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121001235	A	A	121001235	3	1	229	1	0	0	0	0	1	0	0	0	13533	681	24	2	1374	2	RNF10	12	121001235	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	46734	121001235	12850660	1446	174590											
HNF1A	6927	broad.mit.edu	37	chr12	121437060	121437060	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtctgcccctctctccCctgcggccagccctctacag	7	22	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121437060	A	A	121437060	1	1	229	0	1	0	0	0	0	0	0	0	7318	638	22	2		2	HNF1A	12	121437060	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	435825	121437060	12414835	1447	174591											
P2RX7	5027	broad.mit.edu	37	chr12	121598766	121598766	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaaagggatggatggaccCgcagagcaaaggtaccttct	12	8	1	1	rs143722015	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	121598766	A	A	121598766	3	1	229	1	0	0	0	0	1	0	0	0	11439	652	23	1	439	1	P2RX7	12	121598766	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	161706	121598766	12253129	1448	174592											
PSMD9	5715	broad.mit.edu	37	chr12	122326910	122326910	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctggaaagcgtgagtgtgGgttcggggcgccccaagtcg	18	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	122326910	C	C	122326910	1	2	229	0	1	0	0	0	0	0	0	0	12811	1247	43	4		4	PSMD9	12	122326910	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	728144	122326910	11524985	1449	174593											
WDR66	144406	broad.mit.edu	37	chr12	122396317	122396317	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaacccctcattgccatcGggagcatctgtgggatgatc	10	12	3	1	rs79320015	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122396317	T	T	122396317	3	4	229	1	0	0	0	0	1	0	0	0	17444	1116	39	1	1912	1	WDR66	12	122396317	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	69407	122396317	11455578	1450	174594											
VPS33A	65082	broad.mit.edu	37	chr12	122735531	122735531	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagcagccggttctcaccCgagcgcattctcctttccca	7	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	122735531	A	A	122735531	3	1	229	1	0	0	0	0	1	0	0	0	17328	666	23	1	1227	1	VPS33A	12	122735531	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	339214	122735531	11116364	1451	174595											
ZCCHC8	55596	broad.mit.edu	37	chr12	122958465	122958465	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcagatgtttttccctccGggacagggaggtctagctca	11	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122958465	T	T	122958465	3	4	229	1	0	0	0	0	1	0	0	0	17720	1116	39	1	424	1	ZCCHC8	12	122958465	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	222934	122958465	10893430	1452	174596											
RSRC2	65117	broad.mit.edu	37	chr12	123001951	123001951	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctggatcgagacttcttcCgctccctgcttctactacga	7	15	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123001951	A	A	123001951	3	1	229	1	0	0	0	0	1	0	0	0	13826	652	23	1	903	1	RSRC2	12	123001951	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	43486	123001951	10849944	1453	174597											
HIP1R	9026	broad.mit.edu	37	chr12	123345953	123345953	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggctggggcatcaggcagCcctggagaggaggtggccat	18	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	123345953	G	G	123345953	3	3	229	1	0	0	0	0	1	0	0	0	7182	738	26	4	3173	4	HIP1R	12	123345953	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	344002	123345953	10505942	1454	174598											
PITPNM2	57605	broad.mit.edu	37	chr12	123497078	123497078	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctggagtctaccaggtgtGgggaaaaggggcaggacaag	18	6	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123497078	T	T	123497078	1	4	229	0	1	0	0	0	0	0	0	0	12046	1363	47	2		2	PITPNM2	12	123497078	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	151125	123497078	10354817	1455	174599											
PITPNM2	57605	broad.mit.edu	37	chr12	123497388	123497388	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggagctggtgagcgggcaTggaaggagggtggagggtag	24	3	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	123497388	A	A	123497388	1	1	229	0	1	0	0	0	0	0	0	0	12046	1479	51	5		5	PITPNM2	12	123497388	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	310	123497388	10354507	1456	174600											
RILPL1	353116	broad.mit.edu	37	chr12	123983339	123983339	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagggagaccattgtgcGgggctgccacctgcggtagc	15	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123983339	T	T	123983339	1	4	229	0	1	0	0	0	0	0	0	0	13470	1131	39	1		1	RILPL1	12	123983339	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	485951	123983339	9868556	1457	174601											
DNAH10	196385	broad.mit.edu	37	chr12	124274524	124274524	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaactaaaggcagtgacGggggaccccaagcgcattga	13	11	0	3	rs148982654		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	124274524	T	T	124274524	2	4	229	1	0	0	0	0	0	0	0	1	4638	1103	39	1		1	DNAH10	12	124274524	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	291185	124274524	9577371	1458	174602											
UBC	7316	broad.mit.edu	37	chr12	125397360	125397360	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgtcactcggctccacttCgagagtgatggtcttaccag	12	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	125397360	A	A	125397360	4	1	229	1	0	0	0	0	0	1	0	0	16968	893	31	3	1103	3	UBC	12	125397360	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1122836	125397360	8454535	1459	174603											
DHX37	57647	broad.mit.edu	37	chr12	125467172	125467172	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagcatctctgctcgctGggaaaggaaacgagtgtatt	12	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	125467172	T	T	125467172	1	4	229	0	1	0	0	0	0	0	0	0	4550	1363	47	2		2	DHX37	12	125467172	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	69812	125467172	8384723	1460	174604											
RIMBP2	23504	broad.mit.edu	37	chr12	130919346	130919346	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccctcctcttgaagtctggaGagtcataggcgtcctcctcg	10	14	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130919346	T	T	130919346	3	4	229	1	0	0	0	0	1	0	0	0	13472	942	33	3	1059	3	RIMBP2	12	130919346	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5452174	130919346	2932549	1461	174605											
EP400	57634	broad.mit.edu	37	chr12	132497649	132497649	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	acacgagtgcgctggaagtgCctggtcattgatgagatgca	14	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	132497649	G	G	132497649	3	3	229	1	0	0	0	0	1	0	0	0	5191	747	26	4	3596	4	EP400	12	132497649	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1578303	132497649	1354246	1462	174606											
POLE	5426	broad.mit.edu	37	chr12	133214603	133214603	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaccagccagccgcacctgCtggtgatgtactccacgtaa	11	14	0	1	rs114173192	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	133214603	T	T	133214603	3	4	229	1	0	0	0	0	1	0	0	0	12291	797	28	4	1221	4	POLE	12	133214603	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	716954	133214603	637292	1463	174607											
TPTE2	93492	broad.mit.edu	37	chr13	20067047	20067047	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	attcacttgtgtgtgggctaGaggatgataaaagaatacag	12	4	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20067047	T	T	20067047	1	4	229	0	1	0	0	0	0	0	0	0	16555	957	33	3		3	TPTE2	13	20067047	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08		20067047	95102831	1464	174608											
TPTE2	93492	broad.mit.edu	37	chr13	20069310	20069310	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttttcacccatcctagtTgtctttcctgcccaaaagtt	4	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	20069310	C	C	20069310	1	2	229	0	1	0	0	0	0	0	0	0	16555	1827	63	5		5	TPTE2	13	20069310	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2263	20069310	95100568	1465	174609											
CENPJ	55835	broad.mit.edu	37	chr13	25457372	25457372	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttaactcttatccgaccGgatctgtacttcgtttcttg	6	12	3	0	rs113239817		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25457372	T	T	25457372	2	4	229	1	0	0	0	0	0	0	0	1	3264	1103	39	1		1	CENPJ	13	25457372	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	5388062	25457372	89712506	1466	174610											
FLT3	2322	broad.mit.edu	37	chr13	28609671	28609671	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtctcacaagatgtgccaaGggaattgtatgcacagcact	10	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28609671	T	T	28609671	3	4	229	1	0	0	0	0	1	0	0	0	6000	1000	35	2	1475	2	FLT3	13	28609671	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3152299	28609671	86560207	1467	174611											
FLT1	2321	broad.mit.edu	37	chr13	28891526	28891526	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaggaaagaagaaccttGgcatcttccaagactgggac	10	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28891526	T	T	28891526	1	4	229	0	1	0	0	0	0	0	0	0	5999	1363	47	2		2	FLT1	13	28891526	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	281855	28891526	86278352	1468	174612											
HSPH1	10808	broad.mit.edu	37	chr13	31735728	31735728	+	5'UTR	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	caccaccgacatggccggctCgcggtccgcctccgcctcgg	12	20	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31735728	A	A	31735728	1	1	229	0	1	0	0	0	0	0	0	0	7501	899	31	3		3	HSPH1	13	31735728	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	2844202	31735728	83434150	1469	174613											
B3GALTL	145173	broad.mit.edu	37	chr13	31858870	31858870	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaattccattcctactgtGgatttgggaattcctaatac	7	8	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31858870	A	A	31858870	2	1	229	1	0	0	0	0	0	0	0	1	1257	1335	47	4		4	B3GALTL	13	31858870	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	123142	31858870	83311008	1470	174614											
FRY	10129	broad.mit.edu	37	chr13	32849248	32849248	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttctggccgggtgcggtgGctcaagcctgtaatcccagc	13	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	32849248	C	C	32849248	1	2	229	0	1	0	0	0	0	0	0	0	6123	1218	42	4		4	FRY	13	32849248	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	990378	32849248	82320630	1471	174615											
CCNA1	8900	broad.mit.edu	37	chr13	37007250	37007250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctacagtggcccgaggtccCgatgcttgtcagatactcac	11	13	2	1	rs149125997	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37007250	A	A	37007250	2	1	229	1	0	0	0	0	0	0	0	1	2939	639	23	1		1	CCNA1	13	37007250	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	4158002	37007250	78162628	1472	174616											
DGKH	160851	broad.mit.edu	37	chr13	42734390	42734390	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaacctggtagcatacGcatctcatgatgacattctt	8	10	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42734390	T	T	42734390	1	4	229	0	1	0	0	0	0	0	0	0	4510	1102	38	3		3	DGKH	13	42734390	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	5727140	42734390	72435488	1473	174617											
CPB2	1361	broad.mit.edu	37	chr13	46679112	46679112	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcacagaagagaacaatGggtacaaggactgcaaggct	12	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46679112	T	T	46679112	2	4	229	1	0	0	0	0	0	0	0	1	3829	1335	47	2		2	CPB2	13	46679112	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	3944722	46679112	68490766	1474	174618											
WDFY2	115825	broad.mit.edu	37	chr13	52293449	52293449	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagtgggcagcgcctgggAggttatcggaccagtgctgt	18	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52293449	T	T	52293449	2	4	229	1	0	0	0	0	0	0	0	1	17396	291	11	5		5	WDFY2	13	52293449	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	5614337	52293449	62876429	1475	174619											
CCDC70	83446	broad.mit.edu	37	chr13	52439481	52439481	+	5'UTR	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	cccacagggtctgaccagccGacctggacctggccaagggt	13	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52439481	A	A	52439481	1	1	229	0	1	0	0	0	0	0	0	0	2871	1073	37	4		4	CCDC70	13	52439481	5'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	146032	52439481	62730397	1476	174620											
ATP7B	540	broad.mit.edu	37	chr13	52515216	52515216	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggcagaagcagaagataCcgtcaatagccaccaggatg	12	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52515216	A	A	52515216	5	1	229	1	0	0	0	0	0	0	1	0	1195	521	18	3	864	3	ATP7B	13	52515216	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	75735	52515216	62654662	1477	174621											
OLFM4	10562	broad.mit.edu	37	chr13	53602936	53602936	+	5'Flank	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ctataagaagcccctgggctCtctgcagagccagcggctcc	11	15	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53602936	A	A	53602936	1	1	229	0	1	0	0	0	0	0	0	0	10950	928	32	3		3	OLFM4	13	53602936	5'Flank	SNP	C	TCGA-91-6836-01A-21D-1855-08	1087720	53602936	61566942	1478	174622											
SCEL	8796	broad.mit.edu	37	chr13	78134003	78134003	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgcattggacaggtggGtgtttagacatgttacatca	12	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78134003	T	T	78134003	1	4	229	0	1	0	0	0	0	0	0	0	14000	1276	44	3		3	SCEL	13	78134003	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	24531067	78134003	37035875	1479	174623											
RNF219	79596	broad.mit.edu	37	chr13	79189871	79189871	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agactgtgcatctctgaggaCatcttaaacaaagatgaccc	8	10	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79189871	T	T	79189871	3	4	229	1	0	0	0	0	1	0	0	0	13593	478	17	4	159	4	RNF219	13	79189871	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1055868	79189871	35980007	1480	174624											
SLITRK1	114798	broad.mit.edu	37	chr13	84455038	84455038	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggatctccgcaataccaGggatttgctccaagacctcc	9	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	84455038	T	T	84455038	3	4	229	1	0	0	0	0	1	0	0	0	14856	1000	35	2	1489	2	SLITRK1	13	84455038	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5265167	84455038	30714840	1481	174625											
FARP1	10160	broad.mit.edu	37	chr13	99042251	99042251	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaattcctgatggccagtcGggatttctgcaagtccttct	11	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	99042251	T	T	99042251	3	4	229	1	0	0	0	0	1	0	0	0	5733	1116	39	1	1153	1	FARP1	13	99042251	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	14587213	99042251	16127627	1482	174626											
NALCN	259232	broad.mit.edu	37	chr13	101742367	101742367	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaattccaataagcagcaccCgaaggcaaatatctgtagcc	7	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101742367	A	A	101742367	1	1	229	0	1	0	0	0	0	0	0	0	10242	667	23	1		1	NALCN	13	101742367	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2700116	101742367	13427511	1483	174627											
MYO16	23026	broad.mit.edu	37	chr13	109475515	109475515	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaaatgctgctgaaagCcgaaattgcctgggaagaaa	13	6	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	109475515	A	A	109475515	3	1	229	1	0	0	0	0	1	0	0	0	10158	739	26	3	950	3	MYO16	13	109475515	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	7733148	109475515	5694363	1484	174628											
GAS6	2621	broad.mit.edu	37	chr13	114530109	114530109	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttcagccagttccagctcCtcatgcagccatccagacga	8	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	114530109	A	A	114530109	3	1	229	1	0	0	0	0	1	0	0	0	6311	681	24	2	715	2	GAS6	13	114530109	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5054594	114530109	639769	1485	174629											
OR4N2	390429	broad.mit.edu	37	chr14	20295971	20295971	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgtgatggcctttgacCgctacatcgccatctgccgg	11	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20295971	A	A	20295971	3	1	229	1	0	0	0	0	1	0	0	0	11171	652	23	1	366	1	OR4N2	14	20295971	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08		20295971	87053569	1486	174630											
OR4L1	122742	broad.mit.edu	37	chr14	20528323	20528323	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctacggtgctactgtgatGggaaacattctcattatggt	10	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20528323	T	T	20528323	3	4	229	1	0	0	0	0	1	0	0	0	11168	1348	47	2	122	2	OR4L1	14	20528323	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	232352	20528323	86821217	1487	174631											
TTC5	91875	broad.mit.edu	37	chr14	20773928	20773928	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagggttgttatagtaaccAcacagacgcacgcagcttcg	11	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	20773928	G	G	20773928	1	3	229	0	1	0	0	0	0	0	0	0	16837	174	6	5		5	TTC5	14	20773928	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	245605	20773928	86575612	1488	174632											
TOX4	9878	broad.mit.edu	37	chr14	21945407	21945407	+	5'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcggtgggagcgatgagGgtctgagacggtgggagcgg	25	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21945407	T	T	21945407	1	4	229	0	1	0	0	0	0	0	0	0	16504	1247	43	2		2	TOX4	14	21945407	5'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	1171479	21945407	85404133	1489	174633											
LRP10	26020	broad.mit.edu	37	chr14	23344725	23344725	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaagacccgtcccctccCtgccttgcaatgtcaccttg	6	20	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23344725	A	A	23344725	3	1	229	1	0	0	0	0	1	0	0	0	9039	680	24	2	586	2	LRP10	14	23344725	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1399318	23344725	84004815	1490	174634											
C14orf93	60686	broad.mit.edu	37	chr14	23459213	23459213	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attgctgtattggagcatccCcctctacttccctgtcctta	6	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23459213	A	A	23459213	1	1	229	0	1	0	0	0	0	0	0	0	1795	638	22	2		2	C14orf93	14	23459213	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	114488	23459213	83890327	1491	174635											
CMTM5	116173	broad.mit.edu	37	chr14	23847727	23847727	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggtgaggaaccctgaccCctagcccagtttggggccct	12	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23847727	A	A	23847727	1	1	229	0	1	0	0	0	0	0	0	0	3618	638	22	2		2	CMTM5	14	23847727	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	388514	23847727	83501813	1492	174636											
MYH6	4624	broad.mit.edu	37	chr14	23851239	23851239	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttggcaagagtgaggttccCgaggcagtgtcactcctcat	13	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23851239	A	A	23851239	1	1	229	0	1	0	0	0	0	0	0	0	10132	667	23	1		1	MYH6	14	23851239	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	3512	23851239	83498301	1493	174637											
MYH7	4625	broad.mit.edu	37	chr14	23892704	23892704	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacacacacacagagctctGggcacagatagacatggcat	9	12	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23892704	T	T	23892704	1	4	229	0	1	0	0	0	0	0	0	0	10133	1363	47	2		2	MYH7	14	23892704	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	41465	23892704	83456836	1494	174638											
LRRC16B	90668	broad.mit.edu	37	chr14	24530801	24530801	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgctgagcaatgtggcGgagcgtgtcactgtgccccg	15	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24530801	T	T	24530801	2	4	229	1	0	0	0	0	0	0	0	1	9059	1103	39	1		1	LRRC16B	14	24530801	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	638097	24530801	82818739	1495	174639											
PCK2	5106	broad.mit.edu	37	chr14	24568756	24568756	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcttattccctctctccCcaatgcacagatcctgggca	5	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24568756	A	A	24568756	1	1	229	0	1	0	0	0	0	0	0	0	11676	638	22	2		2	PCK2	14	24568756	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	37955	24568756	82780784	1496	174640											
RNF31	55072	broad.mit.edu	37	chr14	24619151	24619151	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tataggagtattcgagacagAcaatgtgtgcaaaggccagt	12	6	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24619151	G	G	24619151	1	3	229	0	1	0	0	0	0	0	0	0	13598	290	10	5		5	RNF31	14	24619151	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	50395	24619151	82730389	1497	174641											
TM9SF1	10548	broad.mit.edu	37	chr14	24663940	24663940	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacgttttcccgaaagcGgatctcatacaaagactcag	7	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24663940	T	T	24663940	3	4	229	1	0	0	0	0	1	0	0	0	16100	1116	39	1	1597	1	TM9SF1	14	24663940	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	44789	24663940	82685600	1498	174642											
TM9SF1	10548	broad.mit.edu	37	chr14	24679975	24679975	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catctaccttgtcaatgtccCtgagaatgagatagatagct	8	9	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24679975	A	A	24679975	5	1	229	1	0	0	0	0	0	0	1	0	16100	695	24	2		2	TM9SF1	14	24679975	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	16035	24679975	82669565	1499	174643											
RIPK3	11035	broad.mit.edu	37	chr14	24805569	24805569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtctccaacttgcacccCagagcagttgtatatgttaa	8	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24805569	A	A	24805569	3	1	229	1	0	0	0	0	1	0	0	0	13493	594	21	2	191	2	RIPK3	14	24805569	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	125594	24805569	82543971	1500	174644											
KHNYN	23351	broad.mit.edu	37	chr14	24905207	24905207	+	Intron	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	gcttttaatgtaaccatgatCcaaacagtgaacattgtacc	6	9	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	24905207	G	G	24905207	1	3	229	0	1	0	0	0	0	0	0	0	8220	870	30	4		4	KHNYN	14	24905207	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	99638	24905207	82444333	1501	174645											
PRKD1	5587	broad.mit.edu	37	chr14	30103557	30103557	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaatctcacagtcctcacGggacattagcaactcctcta	6	13	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30103557	T	T	30103557	1	4	229	0	1	0	0	0	0	0	0	0	12624	1131	39	1		1	PRKD1	14	30103557	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	5198350	30103557	77245983	1502	174646											
PRKD1	5587	broad.mit.edu	37	chr14	30132885	30132885	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatgtaaatggggaagtGggtaaacaggaagccatacc	12	7	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30132885	T	T	30132885	1	4	229	0	1	0	0	0	0	0	0	0	12624	1363	47	2		2	PRKD1	14	30132885	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	29328	30132885	77216655	1503	174647											
HECTD1	25831	broad.mit.edu	37	chr14	31604167	31604167	+	Silent	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	acctggaaaacccaatttctCagtgcagaccttccataacc	5	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31604167	A	A	31604167	2	1	229	1	0	0	0	0	0	0	0	1	7106	813	29	3		3	HECTD1	14	31604167	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1471282	31604167	75745373	1504	174648											
HEATR5A	25938	broad.mit.edu	37	chr14	31789502	31789502	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagacagggcaaagccCagaatggcatagaagaggag	14	9	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31789502	A	A	31789502	1	1	229	0	1	0	0	0	0	0	0	0	7098	609	21	2		2	HEATR5A	14	31789502	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	185335	31789502	75560038	1505	174649											
NPAS3	64067	broad.mit.edu	37	chr14	34269371	34269371	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgccggcgcctgtccagcGcgtcgagcccaggcggcctg	16	18	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34269371	A	A	34269371	3	1	229	1	0	0	0	0	1	0	0	0	10659	1087	38	4	1959	4	NPAS3	14	34269371	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2479869	34269371	73080169	1506	174650											
EGLN3	112399	broad.mit.edu	37	chr14	34395180	34395180	+	Intron	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtatggagtcagctctgatGagttttatgtcacaaatgtc	11	6	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34395180	A	A	34395180	1	1	229	0	1	0	0	0	0	0	0	0	5010	1305	45	4		4	EGLN3	14	34395180	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	125809	34395180	72954360	1507	174651											
SFTA3	253970	broad.mit.edu	37	chr14	36946215	36946215	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctttgtgacagcgtcgtGggatgcagcagggctgtatg	16	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36946215	T	T	36946215	2	4	229	1	0	0	0	0	0	0	0	1	14301	1335	47	2		2	SFTA3	14	36946215	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2551035	36946215	70403325	1508	174652											
PNN	5411	broad.mit.edu	37	chr14	39647005	39647005	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgggtttaaatgaaatGgatcctgttgacagtaaatt	10	3	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39647005	T	T	39647005	1	4	229	0	1	0	0	0	0	0	0	0	12255	1363	47	2		2	PNN	14	39647005	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2700790	39647005	67702535	1509	174653											
MDGA2	161357	broad.mit.edu	37	chr14	47315174	47315174	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaataaacttgtcagtaatcCtggcatcttttatatttgat	5	6	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47315174	A	A	47315174	1	1	229	0	1	0	0	0	0	0	0	0	9500	696	24	2		2	MDGA2	14	47315174	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7668169	47315174	60034366	1510	174654											
SDCCAG1	9147	broad.mit.edu	37	chr14	50251631	50251631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacattccttttctgaaGgagaactttacctttacgct	5	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50251631	T	T	50251631	1	4	229	0	1	0	0	0	0	0	0	0	14070	1015	35	2		2	SDCCAG1	14	50251631	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2936457	50251631	57097909	1511	174655											
DACT1	51339	broad.mit.edu	37	chr14	59112900	59112900	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcctgcagggcgtcccccCggccactcctcccctgctgt	10	21	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59112900	A	A	59112900	3	1	229	1	0	0	0	0	1	0	0	0	4255	652	23	1	1573	1	DACT1	14	59112900	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	8861269	59112900	48236640	1512	174656											
RTN1	6252	broad.mit.edu	37	chr14	60212999	60212999	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcacatctggtaaggaggGgccgggtgtacccagctcct	15	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	60212999	A	A	60212999	3	1	229	1	0	0	0	0	1	0	0	0	13836	1232	43	4	1985	4	RTN1	14	60212999	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1100099	60212999	47136541	1513	174657											
RTN1	6252	broad.mit.edu	37	chr14	60213133	60213133	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	aaatgagagatgtgtaacacGatccttccccatcttttgat	7	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	60213133	C	C	60213133	3	2	229	1	0	0	0	0	1	0	0	0	13836	1059	37	4	2119	4	RTN1	14	60213133	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	134	60213133	47136407	1514	174658											
SYNE2	23224	broad.mit.edu	37	chr14	64450416	64450416	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatattagcataaaataaAaatatgagtattacatttca	4	3	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	64450416	G	G	64450416	1	3	229	0	1	0	0	0	0	0	0	0	15565	29	1	5		5	SYNE2	14	64450416	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	4237283	64450416	42899124	1515	174659											
ACOT2	10965	broad.mit.edu	37	chr14	74035938	74035938	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagcctgcgacggcagccCgagaggatgtctaacaagct	12	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74035938	A	A	74035938	1	1	229	0	1	0	0	0	0	0	0	0	152	667	23	1		1	ACOT2	14	74035938	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	9585522	74035938	33313602	1516	174660											
ZNF410	57862	broad.mit.edu	37	chr14	74388843	74388843	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggtgtctatgaattccCagcccagccttggtggagag	12	11	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74388843	A	A	74388843	3	1	229	1	0	0	0	0	1	0	0	0	18017	595	21	2	1238	2	ZNF410	14	74388843	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	352905	74388843	32960697	1517	174661											
TTLL5	23093	broad.mit.edu	37	chr14	76330170	76330170	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaacaaaaacttcagtccCggcagctcctggaccagagt	8	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76330170	A	A	76330170	2	1	229	1	0	0	0	0	0	0	0	1	16856	643	23	1		1	TTLL5	14	76330170	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1941327	76330170	31019370	1518	174662											
C14orf118	55668	broad.mit.edu	37	chr14	76620803	76620803	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagatggcgctgagccccCgacagcagaggcggcagctt	16	12	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76620803	A	A	76620803	2	1	229	1	0	0	0	0	0	0	0	1	1754	644	23	1		1	C14orf118	14	76620803	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	290633	76620803	30728737	1519	174663											
VIPAR	63894	broad.mit.edu	37	chr14	77914970	77914970	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccgctcctcaactcaaaCtcagtcttagtgtctaaggg	7	13	5	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77914970	A	A	77914970	1	1	229	0	1	0	0	0	0	0	0	0	17295	580	20	3		3	VIPAR	14	77914970	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1294167	77914970	29434570	1520	174664											
SPTLC2	9517	broad.mit.edu	37	chr14	78021718	78021718	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atcataacatccacatcctcGggatccaggccaaagtactc	6	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78021718	T	T	78021718	2	4	229	1	0	0	0	0	0	0	0	1	15242	1103	39	1		1	SPTLC2	14	78021718	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	106748	78021718	29327822	1521	174665											
FLRT2	23768	broad.mit.edu	37	chr14	86089362	86089362	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggatgcttttaactacCgcgcggtagaagacaccatt	9	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86089362	A	A	86089362	3	1	229	1	0	0	0	0	1	0	0	0	5997	652	23	1	1506	1	FLRT2	14	86089362	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	8067644	86089362	21260178	1522	174666											
TDP1	55775	broad.mit.edu	37	chr14	90446935	90446935	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgggttgtcatacacacCtccaacctcatccatgctga	6	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	90446935	T	T	90446935	2	4	229	1	0	0	0	0	0	0	0	1	15850	668	24	4		4	TDP1	14	90446935	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	4357573	90446935	16902605	1523	174667											
TTC7B	145567	broad.mit.edu	37	chr14	91044751	91044751	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttccctgcacgggagtctGgcggggcgcagagccagctg	17	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91044751	T	T	91044751	1	4	229	0	1	0	0	0	0	0	0	0	16839	1363	47	2		2	TTC7B	14	91044751	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	597816	91044751	16304789	1524	174668											
TTC7B	145567	broad.mit.edu	37	chr14	91077093	91077093	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttattctcacctgtctcGggatcgctgaagtctggcaa	9	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91077093	T	T	91077093	2	4	229	1	0	0	0	0	0	0	0	1	16839	1103	39	1		1	TTC7B	14	91077093	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	32342	91077093	16272447	1525	174669											
C14orf159	80017	broad.mit.edu	37	chr14	91662698	91662698	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactagagctgatgtgtgccCtgcttgcctttattttcaag	9	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91662698	A	A	91662698	1	1	229	0	1	0	0	0	0	0	0	0	1768	696	24	2		2	C14orf159	14	91662698	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	585605	91662698	15686842	1526	174670											
CATSPERB	79820	broad.mit.edu	37	chr14	92058306	92058306	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcagttacactcctccCgagtggaaacattagcacac	8	12	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92058306	A	A	92058306	3	1	229	1	0	0	0	0	1	0	0	0	2717	652	23	1	620	1	CATSPERB	14	92058306	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	395608	92058306	15291234	1527	174671											
SLC24A4	123041	broad.mit.edu	37	chr14	92913678	92913678	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccttcacctgccccgggcCccgagctctaaccgcaatct	8	19	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	92913678	A	A	92913678	1	1	229	0	1	0	0	0	0	0	0	0	14582	638	22	2		2	SLC24A4	14	92913678	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	855372	92913678	14435862	1528	174672											
ASB2	51676	broad.mit.edu	37	chr14	94417297	94417297	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctctgacatccttccCgtgtgccctttggggactcc	9	16	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94417297	A	A	94417297	1	1	229	0	1	0	0	0	0	0	0	0	1027	667	23	1		1	ASB2	14	94417297	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1503619	94417297	12932243	1529	174673											
SERPINA12	145264	broad.mit.edu	37	chr14	94963093	94963093	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtgaaaggggatattccGggatatcagggaagtccttg	16	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	94963093	A	A	94963093	1	1	229	0	1	0	0	0	0	0	0	0	14202	1131	39	4		4	SERPINA12	14	94963093	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	545796	94963093	12386447	1530	174674											
C14orf49	161176	broad.mit.edu	37	chr14	95884073	95884073	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagtctttgccctgcccCtgtttccagtttccctggcg	9	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	95884073	A	A	95884073	1	1	229	0	1	0	0	0	0	0	0	0	1789	696	24	2		2	C14orf49	14	95884073	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	920980	95884073	11465467	1531	174675											
ATG2B	55102	broad.mit.edu	37	chr14	96756080	96756080	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatgaggaaaccttttggtCttcttgggctcgatagaaag	12	6	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96756080	A	A	96756080	3	1	229	1	0	0	0	0	1	0	0	0	1098	912	32	3	325	3	ATG2B	14	96756080	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	872007	96756080	10593460	1532	174676											
ATG2B	55102	broad.mit.edu	37	chr14	96761554	96761554	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagatatgcttcttcttagCaaacatttaaatcaatcttg	4	7	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	96761554	A	A	96761554	1	1	229	0	1	0	0	0	0	0	0	0	1098	725	25	3		3	ATG2B	14	96761554	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5474	96761554	10587986	1533	174677											
CYP46A1	10858	broad.mit.edu	37	chr14	100173998	100173998	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagggaatcactgcgtccCgcaacactctggcaaaggta	12	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	100173998	A	A	100173998	3	1	229	1	0	0	0	0	1	0	0	0	4215	652	23	1	702	1	CYP46A1	14	100173998	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3412444	100173998	7175542	1534	174678											
EML1	2009	broad.mit.edu	37	chr14	100380422	100380422	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtatataaaactgttaTagggactatcattatgataa	7	3	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	100380422	C	C	100380422	1	2	229	0	1	0	0	0	0	0	0	0	5138	1421	49	5		5	EML1	14	100380422	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	206424	100380422	6969118	1535	174679											
DYNC1H1	1778	broad.mit.edu	37	chr14	102453756	102453757	+	Intron	DNP	GG	TT	TT													taaaggaacagagtgtgagtGggtgttttaaatattaaata							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	102453757	TT	TT	102453756	1	4	229	0	1	0	0	0	0	0	0	0	4881	1363	47	2		2	DYNC1H1	14	102453756	Intron	DNP	GG	TCGA-91-6836-01A-21D-1855-08	2073334	102453756	4895784	1536	174680											
DYNC1H1	1778	broad.mit.edu	37	chr14	102483806	102483806	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttggggcttgtaatccCcccacagaccctggaagaaa	10	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	102483806	T	T	102483806	2	4	229	1	0	0	0	0	0	0	0	1	4881	610	22	4		4	DYNC1H1	14	102483806	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	30050	102483806	4865734	1537	174681											
DYNC1H1	1778	broad.mit.edu	37	chr14	102516802	102516802	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctacctgaacttcaccCgtgcagacctcatcttcacc	5	17	5	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102516802	A	A	102516802	3	1	229	1	0	0	0	0	1	0	0	0	4881	652	23	1	14153	1	DYNC1H1	14	102516802	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	32996	102516802	4832738	1538	174682											
BAG5	9529	broad.mit.edu	37	chr14	104026516	104026516	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcttctcctggcttccCggatgcaggggtttttttca	10	12	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	104026516	A	A	104026516	3	1	229	1	0	0	0	0	1	0	0	0	1295	652	23	1	361	1	BAG5	14	104026516	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1509714	104026516	3323024	1539	174683											
AHNAK2	113146	broad.mit.edu	37	chr14	105409323	105409323	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctcagacacatccacGgacgcctccatggacttgcc	8	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	105409323	T	T	105409323	2	4	229	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105409323	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1382807	105409323	1940217	1540	174684											
AHNAK2	113146	broad.mit.edu	37	chr14	105409775	105409775	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtccccctgcatggaagGgaggctcacgtcggcctcca	14	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105409775	A	A	105409775	3	1	229	1	0	0	0	0	1	0	0	0	415	1232	43	4	5378	4	AHNAK2	14	105409775	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	452	105409775	1939765	1541	174685											
AHNAK2	113146	broad.mit.edu	37	chr14	105413593	105413593	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgggcatctgcagcttgGgcaggtgccctttgaggccg	15	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105413593	A	A	105413593	3	1	229	1	0	0	0	0	1	0	0	0	415	1232	43	4	9196	4	AHNAK2	14	105413593	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3818	105413593	1935947	1542	174686											
TUBGCP5	114791	broad.mit.edu	37	chr15	22867641	22867641	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacatcatgaccagggtttGtgcctctcccatctgcttca	7	14	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22867641	T	T	22867641	1	4	229	0	1	0	0	0	0	0	0	0	16895	1392	48	3		3	TUBGCP5	15	22867641	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08		22867641	79663751	1543	174687											
CYFIP1	23191	broad.mit.edu	37	chr15	22999276	22999276	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaagagaaaagagacataGaggatgtggagtagctggat	14	4	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22999276	T	T	22999276	1	4	229	0	1	0	0	0	0	0	0	0	4170	957	33	3		3	CYFIP1	15	22999276	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	131635	22999276	79532116	1544	174688											
NDN	4692	broad.mit.edu	37	chr15	23931737	23931737	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgcgcagcacgttccagaCggcgctctctctggcgccgc	13	16	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23931737	T	T	23931737	3	4	229	1	0	0	0	0	1	0	0	0	10342	536	19	4	341	4	NDN	15	23931737	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	932461	23931737	78599655	1545	174689											
C15orf2	23742	broad.mit.edu	37	chr15	24921349	24921349	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgaggtttggacaccccaGttccgtaaggatccctcctc	9	16	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24921349	T	T	24921349	3	4	229	1	0	0	0	0	1	0	0	0	1797	1029	36	3	337	3	C15orf2	15	24921349	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	989612	24921349	77610043	1546	174690											
SNRPN	6638	broad.mit.edu	37	chr15	25221498	25221498	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaaaagcgggttttgGgtctggtgttgctgcgtggg	19	4	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25221498	T	T	25221498	3	4	229	1	0	0	0	0	1	0	0	0	14984	1232	43	2	212	2	SNRPN	15	25221498	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	300149	25221498	77309894	1547	174691											
UBE3A	7337	broad.mit.edu	37	chr15	25620797	25620797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgcattattatccataCgaagaaaagttggacaggaa	9	7	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	25620797	A	A	25620797	3	1	229	1	0	0	0	0	1	0	0	0	17005	536	19	3	2478	3	UBE3A	15	25620797	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	399299	25620797	76910595	1548	174692											
ATP10A	57194	broad.mit.edu	37	chr15	25946978	25946978	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttctaacagcagctgccAggaatgtgagtgtctgccaa	10	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25946978	T	T	25946978	1	4	229	0	1	0	0	0	0	0	0	0	1120	203	7	5		5	ATP10A	15	25946978	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	326181	25946978	76584414	1549	174693											
GABRG3	2567	broad.mit.edu	37	chr15	27586187	27586187	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaataaacagacttcagAggcctgaaagcttcttcaaa	8	8	3	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27586187	C	C	27586187	1	2	229	0	1	0	0	0	0	0	0	0	6233	319	11	5		5	GABRG3	15	27586187	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	1639209	27586187	74945205	1550	174694											
OCA2	4948	broad.mit.edu	37	chr15	28141700	28141700	+	Intron	SNP	G	C	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagaatgcaagcttcctcaGagctcagaagtgggcttctg	11	9	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	28141700	C	C	28141700	1	2	229	0	1	0	0	0	0	0	0	0	10910	957	33	4		4	OCA2	15	28141700	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	555513	28141700	74389692	1551	174695											
HERC2	8924	broad.mit.edu	37	chr15	28375744	28375744	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagtaagagaatcaatctaGagggggaaaaggttcaatta	11	5	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28375744	T	T	28375744	1	4	229	0	1	0	0	0	0	0	0	0	7125	957	33	3		3	HERC2	15	28375744	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	234044	28375744	74155648	1552	174696											
HERC2	8924	broad.mit.edu	37	chr15	28424305	28424305	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctgcaaacaaacttttaGatccaccagccacctgtacc	4	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	28424305	T	T	28424305	3	4	229	1	0	0	0	0	1	0	0	0	7125	942	33	3	5646	3	HERC2	15	28424305	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	48561	28424305	74107087	1553	174697											
HERC2	8924	broad.mit.edu	37	chr15	28483300	28483300	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacgcgtgcatggattccCgggtgtcttcaaactgcaaa	10	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28483300	A	A	28483300	3	1	229	1	0	0	0	0	1	0	0	0	7125	652	23	1	10968	1	HERC2	15	28483300	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	58995	28483300	74048092	1554	174698											
FMN1	342184	broad.mit.edu	37	chr15	33192154	33192154	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaataatggcagatcatGggaacttattatgaaaaata	8	3	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33192154	T	T	33192154	1	4	229	0	1	0	0	0	0	0	0	0	6007	1363	47	2		2	FMN1	15	33192154	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4708854	33192154	69339238	1555	174699											
RYR3	6263	broad.mit.edu	37	chr15	33927929	33927929	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttgaagtggtgactggagGagacatgcgagtcggctggg	19	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33927929	T	T	33927929	3	4	229	1	0	0	0	0	1	0	0	0	13881	1174	41	3	3392	3	RYR3	15	33927929	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	735775	33927929	68603463	1556	174700											
SLC12A6	9990	broad.mit.edu	37	chr15	34531187	34531187	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataaaagtcttccaagcgcGggcatcttcgctttgacgcc	9	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34531187	T	T	34531187	3	4	229	1	0	0	0	0	1	0	0	0	14500	1116	39	1	869	1	SLC12A6	15	34531187	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	603258	34531187	68000205	1557	174701											
SLC12A6	9990	broad.mit.edu	37	chr15	34531252	34531252	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgttgtgcttcatgcccCcaaggccacatgactggatg	11	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34531252	A	A	34531252	3	1	229	1	0	0	0	0	1	0	0	0	14500	623	22	2	934	2	SLC12A6	15	34531252	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	65	34531252	68000140	1558	174702											
C15orf41	84529	broad.mit.edu	37	chr15	36909230	36909230	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttattctgttggggcacGggcctgtgagccagttagag	14	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36909230	T	T	36909230	1	4	229	0	1	0	0	0	0	0	0	0	1808	1131	39	1		1	C15orf41	15	36909230	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2377978	36909230	65622162	1559	174703											
MEIS2	4212	broad.mit.edu	37	chr15	37386720	37386720	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacggggagcgttatttcCtgcttaccttttctaactcc	7	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37386720	A	A	37386720	1	1	229	0	1	0	0	0	0	0	0	0	9561	696	24	2		2	MEIS2	15	37386720	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	477490	37386720	65144672	1560	174704											
THBS1	7057	broad.mit.edu	37	chr15	39885472	39885472	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagagactgatgcatacatGgggaaaaacaaatataaaac	8	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	39885472	T	T	39885472	1	4	229	0	1	0	0	0	0	0	0	0	15976	1363	47	2		2	THBS1	15	39885472	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2498752	39885472	62645920	1561	174705											
RPAP1	26015	broad.mit.edu	37	chr15	41823046	41823046	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	acaagaaaacaggaagcatgTgcaggaagaagacatgcatc	11	7	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41823046	A	A	41823046	1	1	229	0	1	0	0	0	0	0	0	0	13652	1711	59	5		5	RPAP1	15	41823046	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1937574	41823046	60708346	1562	174706											
CAPN3	825	broad.mit.edu	37	chr15	42676731	42676731	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggagccaacagaactgaCatctgtcaaggagagctagg	13	8	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42676731	T	T	42676731	2	4	229	1	0	0	0	0	0	0	0	1	2654	477	17	4		4	CAPN3	15	42676731	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	853685	42676731	59854661	1563	174707											
DUOX2	50506	broad.mit.edu	37	chr15	45390187	45390187	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcctcagacagaacccCcaggtcccacgtttcctacc	7	17	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45390187	A	A	45390187	1	1	229	0	1	0	0	0	0	0	0	0	4841	638	22	2		2	DUOX2	15	45390187	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2713456	45390187	57141205	1564	174708											
DUOX2	50506	broad.mit.edu	37	chr15	45404832	45404832	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctgcgttgctgagccggCgcgggttgggcagctgcggc	20	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45404832	G	G	45404832	3	3	229	1	0	0	0	0	1	0	0	0	4841	768	27	4	4525	4	DUOX2	15	45404832	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	14645	45404832	57126560	1565	174709											
SLC12A1	6557	broad.mit.edu	37	chr15	48513039	48513039	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagagtgaacaaggcctggGcacagctttatgaagagccc	12	9	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48513039	T	T	48513039	1	4	229	0	1	0	0	0	0	0	0	0	14495	1218	42	3		3	SLC12A1	15	48513039	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3108207	48513039	54018353	1566	174710											
C15orf33	196951	broad.mit.edu	37	chr15	49903457	49903457	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgctctttggaggttcTtgcattttctaataaagtaa	7	6	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49903457	A	A	49903457	3	1	229	1	0	0	0	0	1	0	0	0	1804	1606	56	5	1522	5	C15orf33	15	49903457	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	1390418	49903457	52627935	1567	174711											
HDC	3067	broad.mit.edu	37	chr15	50544822	50544822	+	Missense_Mutation	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cactcaccagaacccagtacAgtcaaaatgcaccatcatcc	4	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50544822	T	T	50544822	3	4	229	1	0	0	0	0	1	0	0	0	7082	188	7	5	1071	5	HDC	15	50544822	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	641365	50544822	51986570	1568	174712											
CYP19A1	1588	broad.mit.edu	37	chr15	51507853	51507853	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttacacacctctacacaGtcataacatatgtggcatgg	6	11	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51507853	T	T	51507853	1	4	229	0	1	0	0	0	0	0	0	0	4181	1044	36	3		3	CYP19A1	15	51507853	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	963031	51507853	51023539	1569	174713											
MYO5C	55930	broad.mit.edu	37	chr15	52553383	52553383	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catccaaagacacacaatccCacccggccaaggcccccgtg	7	19	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52553383	A	A	52553383	1	1	229	0	1	0	0	0	0	0	0	0	10174	609	21	2		2	MYO5C	15	52553383	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1045530	52553383	49978009	1570	174714											
GCNT3	9245	broad.mit.edu	37	chr15	59911449	59911449	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctgggccacccttcagCgtgcacggtggatgcctggc	13	15	2	0	rs149420777	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59911449	A	A	59911449	3	1	229	1	0	0	0	0	1	0	0	0	6364	768	27	3	1014	3	GCNT3	15	59911449	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	7358066	59911449	42619943	1571	174715											
TLN2	83660	broad.mit.edu	37	chr15	63004086	63004086	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaagcagacaaacagacCtcatcctctattctgtcttc	5	12	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	63004086	T	T	63004086	1	4	229	0	1	0	0	0	0	0	0	0	16071	696	24	4		4	TLN2	15	63004086	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3092637	63004086	39527306	1572	174716											
TLN2	83660	broad.mit.edu	37	chr15	63031756	63031756	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	caagctcaggtgggtgtggaGgtggttgtctggagttgacc	18	6	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	63031756	C	C	63031756	1	2	229	0	1	0	0	0	0	0	0	0	16071	1015	35	4		4	TLN2	15	63031756	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	27670	63031756	39499636	1573	174717											
C15orf44	81556	broad.mit.edu	37	chr15	65890720	65890720	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	acaacaaaaggttctggcctGgggaagacttgtacatcagc	11	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65890720	A	A	65890720	2	1	229	1	0	0	0	0	0	0	0	1	1811	1335	47	4		4	C15orf44	15	65890720	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2858964	65890720	36640672	1574	174718											
CORO2B	10391	broad.mit.edu	37	chr15	69011816	69011816	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatggtatttaaggctccCatcaaagaaaagaagagtgt	9	5	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69011816	A	A	69011816	2	1	229	1	0	0	0	0	0	0	0	1	3789	581	21	2		2	CORO2B	15	69011816	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3121096	69011816	33519576	1575	174719											
UACA	55075	broad.mit.edu	37	chr15	70961405	70961405	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	1	0	1	1	0	0	0	0	caactgatccttcagttcctCggttagtctgtgattccctg	8	12	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	70961405	G	G	70961405	3	3	229	1	0	0	0	0	1	0	0	0	16950	893	31	4	2648	4	UACA	15	70961405	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1949589	70961405	31569987	1576	174720											
PKM2	5315	broad.mit.edu	37	chr15	72495421	72495421	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acacttataagaagcctccaCgctgcccatggccatggctt	8	14	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72495421	A	A	72495421	3	1	229	1	0	0	0	0	1	0	0	0	12072	536	19	3	529	3	PKM2	15	72495421	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1534016	72495421	30035971	1577	174721											
NEO1	4756	broad.mit.edu	37	chr15	73454676	73454676	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaagggaaatcattggctGttcaaatcatcatgttcaaa	7	9	5	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	73454676	T	T	73454676	1	4	229	0	1	0	0	0	0	0	0	0	10431	1392	48	3		3	NEO1	15	73454676	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	959255	73454676	29076716	1578	174722											
HCN4	10021	broad.mit.edu	37	chr15	73616393	73616393	+	Intron	DEL	C	-	-													cctgccctcctcccccaacaCcccccacctgccccgcctgt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	73616393	-	-	73616393	6	5	229	0	1	1	0	1	0	0	0	0	7065	522	18	0		0	HCN4	15	73616393	Intron	DEL	C	TCGA-91-6836-01A-21D-1855-08	161717	73616393	28914999	1579	174723											
NPTN	27020	broad.mit.edu	37	chr15	73865940	73865940	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactacagtaactgacccaCgtgtctggacctctgcaggg	10	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73865940	A	A	73865940	1	1	229	0	1	0	0	0	0	0	0	0	10696	551	19	3		3	NPTN	15	73865940	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	249547	73865940	28665452	1580	174724											
PML	5371	broad.mit.edu	37	chr15	74336018	74336018	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccaggccctaccctgtgGcatggactcaacattggggc	12	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74336018	A	A	74336018	1	1	229	0	1	0	0	0	0	0	0	0	12230	1218	42	4		4	PML	15	74336018	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	470078	74336018	28195374	1581	174725											
ARNT2	9915	broad.mit.edu	37	chr15	80806503	80806503	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatttatttttgattttcaGaccatgtgggaggaaggaac	11	4	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80806503	T	T	80806503	1	4	229	0	1	0	0	0	0	0	0	0	970	957	33	3		3	ARNT2	15	80806503	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	6470485	80806503	21724889	1582	174726											
TMC3	342125	broad.mit.edu	37	chr15	81633780	81633780	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cacattgcaggtcagcacagCccagcttctcaggtacatga	9	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81633780	T	T	81633780	3	4	229	1	0	0	0	0	1	0	0	0	16109	739	26	4	1535	4	TMC3	15	81633780	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	827277	81633780	20897612	1583	174727											
SH3GL3	6457	broad.mit.edu	37	chr15	84286886	84286886	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggtctctatgactttgaGccagaaaaccaaggagaatt	10	8	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84286886	A	A	84286886	2	1	229	1	0	0	0	0	0	0	0	1	14365	962	34	4		4	SH3GL3	15	84286886	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2653106	84286886	18244506	1584	174728											
ADAMTSL3	57188	broad.mit.edu	37	chr15	84561633	84561634	+	Missense_Mutation	DNP	GG	TT	TT													caagtggattgccatggagtGgtctcaggtaagatttgaga							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	84561634	TT	TT	84561633	3	4	229	1	0	0	0	0	1	0	0	0	276	1357	47	2	1506	2	ADAMTSL3	15	84561633	Missense_Mutation	DNP	GG	TCGA-91-6836-01A-21D-1855-08	274747	84561633	17969759	1585	174729											
ALPK3	57538	broad.mit.edu	37	chr15	85382918	85382918	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggagaggtggcacctccCgctcctacctctaggtgtcg	14	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	85382918	A	A	85382918	1	1	229	0	1	0	0	0	0	0	0	0	546	667	23	1		1	ALPK3	15	85382918	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	821285	85382918	17148474	1586	174730											
ALPK3	57538	broad.mit.edu	37	chr15	85383197	85383197	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaagcggcgattgagcggGgctcaagcgccgggcccctc	16	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	85383197	T	T	85383197	2	4	229	1	0	0	0	0	0	0	0	1	546	1219	43	2		2	ALPK3	15	85383197	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	279	85383197	17148195	1587	174731											
AKAP13	11214	broad.mit.edu	37	chr15	86278314	86278314	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcaagatgtggtcggtccCgtttccctgccccggagagc	14	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	86278314	A	A	86278314	2	1	229	1	0	0	0	0	0	0	0	1	449	639	23	1		1	AKAP13	15	86278314	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	895117	86278314	16253078	1588	174732											
ACAN	176	broad.mit.edu	37	chr15	89400720	89400720	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	atttagtggtgagtattctgGggtggaccttggaagtggcc	16	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89400720	A	A	89400720	3	1	229	1	0	0	0	0	1	0	0	0	117	1232	43	4	4946	4	ACAN	15	89400720	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3122406	89400720	13130672	1589	174733											
PRC1	9055	broad.mit.edu	37	chr15	91527863	91527863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccttctgtatgctatctcGggtgagacaccaacatcctt	7	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	91527863	T	T	91527863	1	4	229	0	1	0	0	0	0	0	0	0	12552	1131	39	1		1	PRC1	15	91527863	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2127143	91527863	11003529	1590	174734											
SV2B	9899	broad.mit.edu	37	chr15	91801710	91801710	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggagagtgtttgtcatcGtctgtgctctgccctgcacc	12	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	91801710	A	A	91801710	3	1	229	1	0	0	0	0	1	0	0	0	15536	1145	40	4	858	4	SV2B	15	91801710	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	273847	91801710	10729682	1591	174735											
TM2D3	80213	broad.mit.edu	37	chr15	102182797	102182797	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcttgccgaggccttccCgccactggcccaggtagaaa	12	14	0	2	rs149589972		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	102182797	A	A	102182797	3	1	229	1	0	0	0	0	1	0	0	0	16088	652	23	1	118	1	TM2D3	15	102182797	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	10381087	102182797	348595	1592	174736											
BAIAP3	8938	broad.mit.edu	37	chr16	1388961	1388961	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	1	1	0	1	0	0	0	gcctcatgctgaagaaggggGaaggcagacagggcttgccg	17	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1388961	A	A	1388961	3	1	229	1	0	0	0	0	1	0	0	0	1309	1175	41	4	305	4	BAIAP3	16	1388961	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08		1388961	88965792	1593	174737											
PKD1	5310	broad.mit.edu	37	chr16	2155467	2155467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgccgccacgtccagggcCcgctcgtactggggcaggca	14	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2155467	A	A	2155467	2	1	229	1	0	0	0	0	0	0	0	1	12058	610	22	2		2	PKD1	16	2155467	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	766506	2155467	88199286	1594	174738											
TRAF7	84231	broad.mit.edu	37	chr16	2222317	2222317	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcgggcagcgggaagcccCccatctttgaggtggacccc	14	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	2222317	T	T	2222317	3	4	229	1	0	0	0	0	1	0	0	0	16570	623	22	4	627	4	TRAF7	16	2222317	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	66850	2222317	88132436	1595	174739											
PRSS21	10942	broad.mit.edu	37	chr16	2871423	2871423	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactgtggtatcagattggAgtcgtgagctggggagtggg	20	4	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	2871423	G	G	2871423	2	3	229	1	0	0	0	0	0	0	0	1	12724	291	11	5		5	PRSS21	16	2871423	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	649106	2871423	87483330	1596	174740											
C16orf90	646174	broad.mit.edu	37	chr16	3546517	3546517	+	5'Flank	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaggtgtgtgcgctgccCgtgaccagccggcccacagc	13	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3546517	T	T	3546517	1	4	229	0	1	0	0	0	0	0	0	0	1857	667	23	4		4	C16orf90	16	3546517	5'Flank	SNP	C	TCGA-91-6836-01A-21D-1855-08	675094	3546517	86808236	1597	174741											
TRAP1	10131	broad.mit.edu	37	chr16	3724427	3724427	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggggcttgtcgtgagcctgCgcgacgtagcggtagaactc	16	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3724427	A	A	3724427	2	1	229	1	0	0	0	0	0	0	0	1	16579	755	27	3		3	TRAP1	16	3724427	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	177910	3724427	86630326	1598	174742											
PPL	5493	broad.mit.edu	37	chr16	4934021	4934021	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagttatggaattccagctcCgaaagcctggcttccagccg	11	12	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	4934021	A	A	4934021	2	1	229	1	0	0	0	0	0	0	0	1	12435	639	23	1		1	PPL	16	4934021	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1209594	4934021	85420732	1599	174743											
A2BP1	54715	broad.mit.edu	37	chr16	7715096	7715096	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtctgtaggaaataattcCgtggtttgtcttgcaggaca	12	6	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7715096	T	T	7715096	1	4	229	0	1	0	0	0	0	0	0	0	3	667	23	4		4	A2BP1	16	7715096	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2781075	7715096	82639657	1600	174744											
ABAT	18	broad.mit.edu	37	chr16	8873339	8873339	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctcctcccactacaggccCggtacccccagttcatcagc	7	19	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8873339	A	A	8873339	2	1	229	1	0	0	0	0	0	0	0	1	27	643	23	1		1	ABAT	16	8873339	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1158243	8873339	81481414	1601	174745											
MKL2	57496	broad.mit.edu	37	chr16	14280892	14280892	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	accagaaaagtctcaaggaaGgtcagtctgtctgtggacag	12	8	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	14280892	T	T	14280892	1	4	229	0	1	0	0	0	0	0	0	0	9695	1015	35	2		2	MKL2	16	14280892	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	5407553	14280892	76073861	1602	174746											
PARN	5073	broad.mit.edu	37	chr16	14576651	14576651	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attcagcataggtttggatcCgatagctttctgcatatttg	9	7	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14576651	A	A	14576651	3	1	229	1	0	0	0	0	1	0	0	0	11547	652	23	1	417	1	PARN	16	14576651	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	295759	14576651	75778102	1603	174747											
NPIP	9284	broad.mit.edu	37	chr16	15029134	15029134	+	5'Flank	SNP	G	T	T													tctgaggcctccacgctgagGtgagggctctactgggggtc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15029134	T	T	15029134	1	4	229	0	1	0	0	0	0	0	0	0	10679	1276	44	3		3	NPIP	16	15029134	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	452483	15029134	75325619	1604	174748	717	2									
NPIP	9284	broad.mit.edu	37	chr16	15029136	15029136	+	5'Flank	SNP	G	T	T													tgaggcctccacgctgaggtGagggctctactgggggtcct							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15029136	T	T	15029136	1	4	229	0	1	0	0	0	0	0	0	0	10679	1305	45	3		3	NPIP	16	15029136	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	2	15029136	75325617	1605	174749	717	2									
NPIP	9284	broad.mit.edu	37	chr16	15045798	15045798	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccctcagctccaccctcAgtggatgataatctcaagac	6	16	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	15045798	G	G	15045798	2	3	229	1	0	0	0	0	0	0	0	1	10679	175	7	5		5	NPIP	16	15045798	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	16662	15045798	75308955	1606	174750											
MYH11	4629	broad.mit.edu	37	chr16	15811172	15811172	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttctgggccgtgctgcGctctgtggccagctcgttgc	13	13	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	15811172	T	T	15811172	3	4	229	1	0	0	0	0	1	0	0	0	10125	1087	38	3	640	3	MYH11	16	15811172	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	765374	15811172	74543581	1607	174751											
NOMO3	408050	broad.mit.edu	37	chr16	16337294	16337294	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtagaacacagcaggtGtatttaggaatgagattgag	13	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	16337294	T	T	16337294	1	4	229	0	1	0	0	0	0	0	0	0	10628	1392	48	3		3	NOMO3	16	16337294	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	526122	16337294	74017459	1608	174752											
ACSM2B	348158	broad.mit.edu	37	chr16	20548527	20548527	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agtaaggccaagggcccaaaGggaaaagaaagagaaagaag	14	5	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20548527	T	T	20548527	1	4	229	0	1	0	0	0	0	0	0	0	184	1015	35	2		2	ACSM2B	16	20548527	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	4211233	20548527	69806226	1609	174753											
ACSM1	116285	broad.mit.edu	37	chr16	20638604	20638604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagtgttgtagaagtccCcacattccactttagctgtc	7	14	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20638604	A	A	20638604	3	1	229	1	0	0	0	0	1	0	0	0	182	623	22	2	415	2	ACSM1	16	20638604	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	90077	20638604	69716149	1610	174754											
OTOA	146183	broad.mit.edu	37	chr16	21728474	21728474	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaaatttatttctgtgGgattagtataggaggcagaa	11	2	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21728474	T	T	21728474	1	4	229	0	1	0	0	0	0	0	0	0	11396	1247	43	2		2	OTOA	16	21728474	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1089870	21728474	68626279	1611	174755											
CDR2	1039	broad.mit.edu	37	chr16	22360942	22360942	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcccatattgacccaaacCcactgcagccatgttctatt	4	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22360942	T	T	22360942	1	4	229	0	1	0	0	0	0	0	0	0	3202	638	22	4		4	CDR2	16	22360942	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	632468	22360942	67993811	1612	174756											
HS3ST2	9956	broad.mit.edu	37	chr16	22926573	22926573	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagctggctgcagtacttccCgctagctcagattcacttcg	10	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22926573	A	A	22926573	3	1	229	1	0	0	0	0	1	0	0	0	7431	652	23	1	800	1	HS3ST2	16	22926573	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	565631	22926573	67428180	1613	174757											
USP31	57478	broad.mit.edu	37	chr16	23080432	23080432	+	Silent	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttgactggagagctgtcTacggagtcgctctgatccac	11	11	3	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	23080432	A	A	23080432	2	1	229	1	0	0	0	0	0	0	0	1	17189	1509	53	5		5	USP31	16	23080432	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	153859	23080432	67274321	1614	174758											
COG7	91949	broad.mit.edu	37	chr16	23444923	23444923	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaaggcatcatagagtccGgtaagctgccggtccaggga	14	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23444923	T	T	23444923	2	4	229	1	0	0	0	0	0	0	0	1	3695	1103	39	1		1	COG7	16	23444923	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	364491	23444923	66909830	1615	174759											
CACNG3	10368	broad.mit.edu	37	chr16	24358105	24358105	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcacttccctgaagatgctGactacgaacaggacacagcc	8	13	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24358105	T	T	24358105	3	4	229	1	0	0	0	0	1	0	0	0	2584	1290	45	3	268	3	CACNG3	16	24358105	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	913182	24358105	65996648	1616	174760											
RBBP6	5930	broad.mit.edu	37	chr16	24578602	24578602	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catacacttcctctccctccGggtgttcctcctccacagtt	5	18	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24578602	T	T	24578602	2	4	229	1	0	0	0	0	0	0	0	1	13211	1103	39	1		1	RBBP6	16	24578602	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	220497	24578602	65776151	1617	174761											
SLC5A11	115584	broad.mit.edu	37	chr16	24919397	24919397	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	catcagctcctacctgcagcCgcctgtggcggtggtcttca	11	15	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	24919397	A	A	24919397	3	1	229	1	0	0	0	0	1	0	0	0	14777	652	23	1	1425	1	SLC5A11	16	24919397	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	340795	24919397	65435356	1618	174762											
ARHGAP17	55114	broad.mit.edu	37	chr16	24941997	24941997	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggtttggtttggcttgcGggtgtagtttgctgacacct	14	7	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	24941997	T	T	24941997	1	4	229	0	1	0	0	0	0	0	0	0	869	1131	39	1		1	ARHGAP17	16	24941997	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	22600	24941997	65412756	1619	174763											
LCMT1	51451	broad.mit.edu	37	chr16	25151492	25151492	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tattgtgtgtttttccccagGatgaagatcttctcccaagt	8	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	25151492	T	T	25151492	3	4	229	1	0	0	0	0	1	0	0	0	8750	1188	41	3	342	3	LCMT1	16	25151492	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	209495	25151492	65203261	1620	174764											
HS3ST4	9951	broad.mit.edu	37	chr16	26044075	26044075	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cgcggatcttctctgtggttCgtccttcaccttggctttat	9	12	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26044075	A	A	26044075	1	1	229	0	1	0	0	0	0	0	0	0	7434	899	31	3		3	HS3ST4	16	26044075	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	892583	26044075	64310678	1621	174765											
IL4R	3566	broad.mit.edu	37	chr16	27374557	27374557	+	Silent	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggggctagcagtggggaAgaggggtataagcctttcca	16	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	27374557	G	G	27374557	2	3	229	1	0	0	0	0	0	0	0	1	7768	69	3	5		5	IL4R	16	27374557	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	1330482	27374557	62980196	1622	174766											
KIAA0556	23247	broad.mit.edu	37	chr16	27720169	27720169	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacaaagctttatgtgtcGccccacgatgtggatatccg	10	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27720169	A	A	27720169	2	1	229	1	0	0	0	0	0	0	0	1	8253	1074	38	4		4	KIAA0556	16	27720169	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	345612	27720169	62634584	1623	174767											
ATP2A1	487	broad.mit.edu	37	chr16	28914822	28914822	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccccttccccatgacgcCgcccccgccccgccccgtac	7	26	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28914822	A	A	28914822	1	1	229	0	1	0	0	0	0	0	0	0	1140	667	23	1		1	ATP2A1	16	28914822	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1194653	28914822	61439931	1624	174768											
RABEP2	79874	broad.mit.edu	37	chr16	28920082	28920082	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cttgtgggtggtgaccagctCcgcctatggacagacagtta	13	10	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28920082	A	A	28920082	4	1	229	1	0	0	0	0	0	1	0	0	13070	864	30	3	640	3	RABEP2	16	28920082	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5260	28920082	61434671	1625	174769											
CD19	930	broad.mit.edu	37	chr16	28948897	28948897	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggtgtaattgcagcgctGtgacactcctagaaggggtc	13	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28948897	A	A	28948897	1	1	229	0	1	0	0	0	0	0	0	0	3003	1392	48	4		4	CD19	16	28948897	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	28815	28948897	61405856	1626	174770											
CD19	930	broad.mit.edu	37	chr16	28949220	28949220	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctctgacaccagatccaaCtttgacctgaccctgacccc	6	17	1	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28949220	A	A	28949220	1	1	229	0	1	0	0	0	0	0	0	0	3003	580	20	3		3	CD19	16	28949220	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	323	28949220	61405533	1627	174771											
MVP	9961	broad.mit.edu	37	chr16	29844966	29844966	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tttcaggacatacagagatgGatgttgtggacccgcctcca	11	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	29844966	T	T	29844966	1	4	229	0	1	0	0	0	0	0	0	0	10090	1189	41	3		3	MVP	16	29844966	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	895746	29844966	60509787	1628	174772											
SEZ6L2	26470	broad.mit.edu	37	chr16	29885112	29885112	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatcagcctgggcaacaCagagagaccccatctctaca	8	13	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29885112	A	A	29885112	1	1	229	0	1	0	0	0	0	0	0	0	14257	493	17	3		3	SEZ6L2	16	29885112	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	40146	29885112	60469641	1629	174773											
PPP4C	5531	broad.mit.edu	37	chr16	30093735	30093735	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaagctcactaaagcagcGggtgtttggagggtagtccc	13	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30093735	T	T	30093735	1	4	229	0	1	0	0	0	0	0	0	0	12503	1131	39	1		1	PPP4C	16	30093735	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	208623	30093735	60261018	1630	174774											
ITGAL	3683	broad.mit.edu	37	chr16	30486638	30486638	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcaccagggtcatcgtggGagctccaggggaggggaaca	16	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30486638	T	T	30486638	3	4	229	1	0	0	0	0	1	0	0	0	7956	1174	41	3	186	3	ITGAL	16	30486638	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	392903	30486638	59868115	1631	174775											
SRCAP	10847	broad.mit.edu	37	chr16	30723611	30723611	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccattcccctgcttctgcGgggccagctccgggagtacc	12	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30723611	T	T	30723611	3	4	229	1	0	0	0	0	1	0	0	0	15253	1116	39	1	1886	1	SRCAP	16	30723611	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	236973	30723611	59631142	1632	174776											
FUS	2521	broad.mit.edu	37	chr16	31201000	31201000	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagacaaacaagaaaacGggacagcccatgattaattt	7	9	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31201000	T	T	31201000	2	4	229	1	0	0	0	0	0	0	0	1	6160	1103	39	1		1	FUS	16	31201000	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	477389	31201000	59153753	1633	174777											
ITGAM	3684	broad.mit.edu	37	chr16	31283128	31283128	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagatgtctgaggggtgggGgcaccttctccagcatcaca	15	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31283128	T	T	31283128	1	4	229	0	1	0	0	0	0	0	0	0	7957	1247	43	2		2	ITGAM	16	31283128	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	82128	31283128	59071625	1634	174778											
ITGAD	3681	broad.mit.edu	37	chr16	31427890	31427891	+	Missense_Mutation	DNP	GG	TT	TT													ttgtgactgtgtggaacgcaGgtgaggattcctacggaacc							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	TT	31427891	TT	TT	31427890	3	4	229	1	0	0	0	0	1	0	0	0	7954	1000	35	2	2500	2	ITGAD	16	31427890	Missense_Mutation	DNP	GG	TCGA-91-6836-01A-21D-1855-08	144762	31427890	58926863	1635	174779											
GPT2	84706	broad.mit.edu	37	chr16	46950456	46950456	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaagggaacacagggcactGagtgattctggatgggcttc	14	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46950456	T	T	46950456	1	4	229	0	1	0	0	0	0	0	0	0	6804	1305	45	3		3	GPT2	16	46950456	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	15522566	46950456	43404297	1636	174780											
PHKB	5257	broad.mit.edu	37	chr16	47630350	47630350	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaatatgaaaaaaataaccCtggtagtcaaaaacgatttc	6	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47630350	A	A	47630350	3	1	229	1	0	0	0	0	1	0	0	0	11940	681	24	2	1380	2	PHKB	16	47630350	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	679894	47630350	42724403	1637	174781											
PHKB	5257	broad.mit.edu	37	chr16	47694641	47694641	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacggcaaagcagcaccCctagtgctcctgaactggga	10	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47694641	A	A	47694641	3	1	229	1	0	0	0	0	1	0	0	0	11940	623	22	2	2252	2	PHKB	16	47694641	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	64291	47694641	42660112	1638	174782											
ABCC11	85320	broad.mit.edu	37	chr16	48248902	48248902	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggctctggacaagccCgcacttctccaatagtttcc	8	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	48248902	A	A	48248902	3	1	229	1	0	0	0	0	1	0	0	0	51	652	23	1	3098	1	ABCC11	16	48248902	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	554261	48248902	42105851	1639	174783											
ABCC11	85320	broad.mit.edu	37	chr16	48256471	48256471	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtccggaggaagggtagGgaagcatggcccagaatagg	17	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	48256471	T	T	48256471	1	4	229	0	1	0	0	0	0	0	0	0	51	1247	43	2		2	ABCC11	16	48256471	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	7569	48256471	42098282	1640	174784											
FTO	79068	broad.mit.edu	37	chr16	53859891	53859891	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcatggctgcttatttcGggacctggttaggatccaag	12	9	0	0	rs143695616		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	53859891	T	T	53859891	3	4	229	1	0	0	0	0	1	0	0	0	6146	1116	39	1	249	1	FTO	16	53859891	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5603420	53859891	36494862	1641	174785											
FTO	79068	broad.mit.edu	37	chr16	54145824	54145824	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcttctggaagcaaaaccCtagaaggagcacaagtctca	9	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54145824	A	A	54145824	2	1	229	1	0	0	0	0	0	0	0	1	6146	668	24	2		2	FTO	16	54145824	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	285933	54145824	36208929	1642	174786											
CES7	221223	broad.mit.edu	37	chr16	55880441	55880441	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggactgtggagcatgtcGgaggcagacaggatcagggg	19	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55880441	A	A	55880441	2	1	229	1	0	0	0	0	0	0	0	1	3302	1103	39	4		4	CES7	16	55880441	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1734617	55880441	34474312	1643	174787											
BBS2	583	broad.mit.edu	37	chr16	56536502	56536502	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacaggatctcggtacaaaTacttcaggtgaaatttcctg	8	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	56536502	C	C	56536502	1	2	229	0	1	0	0	0	0	0	0	0	1343	1421	49	5		5	BBS2	16	56536502	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	656061	56536502	33818251	1644	174788											
NAE1	8883	broad.mit.edu	37	chr16	66837013	66837013	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tattttgatgacctcttgagCagcagctcctgaaaggaaaa	9	8	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66837013	A	A	66837013	3	1	229	1	0	0	0	0	1	0	0	0	10233	710	25	3	104	3	NAE1	16	66837013	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	10300511	66837013	23517740	1645	174789											
ATP6V0D1	9114	broad.mit.edu	37	chr16	67472863	67472863	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccgctgtcctgccagccGgggcactcaccgggtagtaa	12	15	1	0	rs72650140		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67472863	T	T	67472863	1	4	229	0	1	0	0	0	0	0	0	0	1177	1131	39	1		1	ATP6V0D1	16	67472863	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	635850	67472863	22881890	1646	174790											
C16orf48	84080	broad.mit.edu	37	chr16	67698919	67698919	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagctgggccttgacccGggactccaccttgtcgtact	12	14	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	67698919	T	T	67698919	2	4	229	1	0	0	0	0	0	0	0	1	1830	1115	39	1		1	C16orf48	16	67698919	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	226056	67698919	22655834	1647	174791											
NFATC3	4775	broad.mit.edu	37	chr16	68215447	68215447	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggggtaagaaatttacCttaattcttaagaaatattt	6	4	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	68215447	A	A	68215447	1	1	229	0	1	0	0	0	0	0	0	0	10459	696	24	2		2	NFATC3	16	68215447	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	516528	68215447	22139306	1648	174792											
SLC7A6	9057	broad.mit.edu	37	chr16	68328628	68328628	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttcttcgtgggctcccGggagggccacctaccggacc	14	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68328628	T	T	68328628	3	4	229	1	0	0	0	0	1	0	0	0	14815	1116	39	1	1065	1	SLC7A6	16	68328628	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	113181	68328628	22026125	1649	174793											
ZFP90	146198	broad.mit.edu	37	chr16	68597524	68597524	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	catcagagaattcacactggGgagaaaccctttgaatgcaa	9	9	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	68597524	T	T	68597524	2	4	229	1	0	0	0	0	0	0	0	1	17780	1219	43	2		2	ZFP90	16	68597524	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	268896	68597524	21757229	1650	174794											
TMED6	146456	broad.mit.edu	37	chr16	69381973	69381973	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagaaagtacaaagatccCgtttttgacatggaagacac	8	8	0	4	rs113672113		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69381973	A	A	69381973	1	1	229	0	1	0	0	0	0	0	0	0	16131	667	23	1		1	TMED6	16	69381973	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	784449	69381973	20972780	1651	174795											
NQO1	1728	broad.mit.edu	37	chr16	69760152	69760152	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaaggatccgcgacaccGgatacaaacagaagctctcc	11	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69760152	T	T	69760152	1	4	229	0	1	0	0	0	0	0	0	0	10706	1131	39	1		1	NQO1	16	69760152	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	378179	69760152	20594601	1652	174796											
WWP2	11060	broad.mit.edu	37	chr16	69922135	69922135	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcggctgcccaggccccCgacgctctgcctgctgggtg	14	18	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	69922135	A	A	69922135	2	1	229	1	0	0	0	0	0	0	0	1	17543	639	23	1		1	WWP2	16	69922135	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	161983	69922135	20432618	1653	174797											
CLEC18C	283971	broad.mit.edu	37	chr16	70070376	70070376	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtggtatctgaaagtatCctagttgtaagttttctcag	10	5	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70070376	A	A	70070376	1	1	229	0	1	0	0	0	0	0	0	0	3536	870	30	3		3	CLEC18C	16	70070376	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	148241	70070376	20284377	1654	174798											
VAC14	55697	broad.mit.edu	37	chr16	70815870	70815870	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccagctggatgaactccCgcatccagcacatggctgtc	10	16	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	70815870	A	A	70815870	3	1	229	1	0	0	0	0	1	0	0	0	17238	652	23	1	1548	1	VAC14	16	70815870	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	745494	70815870	19538883	1655	174799											
MARVELD3	91862	broad.mit.edu	37	chr16	71668181	71668181	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agttccacagggggctacacGggcatcaccagcttgggggg	16	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71668181	T	T	71668181	2	4	229	1	0	0	0	0	0	0	0	1	9411	1103	39	1		1	MARVELD3	16	71668181	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	852311	71668181	18686572	1656	174800											
DHX38	9785	broad.mit.edu	37	chr16	72130760	72130760	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagagactccatcccatccGggtggtgtgagcgaagagtt	14	9	0	3	rs147413193		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72130760	T	T	72130760	2	4	229	1	0	0	0	0	0	0	0	1	4551	1103	39	1		1	DHX38	16	72130760	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	462579	72130760	18223993	1657	174801											
PMFBP1	83449	broad.mit.edu	37	chr16	72162647	72162647	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	aacaacactgtagctctgctCggagattctcattttcttcc	6	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72162647	A	A	72162647	3	1	229	1	0	0	0	0	1	0	0	0	12229	884	31	3	1118	3	PMFBP1	16	72162647	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	31887	72162647	18192106	1658	174802											
PKD1L2	114780	broad.mit.edu	37	chr16	81204688	81204688	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgctctctgaccttggcacGggggagaaaggcagggagag	17	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81204688	T	T	81204688	1	4	229	0	1	0	0	0	0	0	0	0	12060	1131	39	1		1	PKD1L2	16	81204688	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	9042041	81204688	9150065	1659	174803											
PLCG2	5336	broad.mit.edu	37	chr16	81942093	81942093	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggagaagaggacgagtgccGagaagttgctgcaggaatac	16	6	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	81942093	T	T	81942093	4	4	229	1	0	0	0	0	0	1	0	0	12131	1059	37	3	1692	3	PLCG2	16	81942093	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	737405	81942093	8412660	1660	174804											
CDH13	1012	broad.mit.edu	37	chr16	83781765	83781765	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatattaaccccatcaatGggactgttgacaccacagct	7	11	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	83781765	T	T	83781765	3	4	229	1	0	0	0	0	1	0	0	0	3129	1348	47	2	1633	2	CDH13	16	83781765	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1839672	83781765	6572988	1661	174805											
KLHL36	79786	broad.mit.edu	37	chr16	84690537	84690537	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaacgagcagcgtctcCgcgggctcttctgcgacgtc	14	14	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	84690537	A	A	84690537	3	1	229	1	0	0	0	0	1	0	0	0	8460	652	23	1	130	1	KLHL36	16	84690537	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	908772	84690537	5664216	1662	174806											
FBXO31	79791	broad.mit.edu	37	chr16	87380923	87380923	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcagggagcccaggaaccCcgagagggaggaaggaacca	16	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87380923	A	A	87380923	1	1	229	0	1	0	0	0	0	0	0	0	5798	638	22	2		2	FBXO31	16	87380923	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2690386	87380923	2973830	1663	174807											
JPH3	57338	broad.mit.edu	37	chr16	87678713	87678713	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcccagtctgttcagtcCtgctgtcgctcaaggccttg	11	13	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	87678713	A	A	87678713	1	1	229	0	1	0	0	0	0	0	0	0	8032	696	24	2		2	JPH3	16	87678713	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	297790	87678713	2676040	1664	174808											
SPATA2L	124044	broad.mit.edu	37	chr16	89764657	89764657	+	Silent	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	atcttctggaagctcttcagGaggaggtcgtctgagagcac	13	9	5	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	89764657	T	T	89764657	2	4	229	1	0	0	0	0	0	0	0	1	15125	1161	41	3		3	SPATA2L	16	89764657	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	2085944	89764657	590096	1665	174809											
ITGAE	3682	broad.mit.edu	37	chr17	3632951	3632951	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcaggagtgcagtgttgCcgtctcagctcactgcaacc	12	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3632951	T	T	3632951	1	4	229	0	1	0	0	0	0	0	0	0	7955	754	26	4		4	ITGAE	17	3632951	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08		3632951	77562259	1666	174810											
USP6	9098	broad.mit.edu	37	chr17	5066291	5066291	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accttcgctatcaaacatccCaggaaagggtaagaatttag	8	9	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5066291	A	A	5066291	3	1	229	1	0	0	0	0	1	0	0	0	17213	595	21	2	3122	2	USP6	17	5066291	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1433340	5066291	76128919	1667	174811											
SLC13A5	284111	broad.mit.edu	37	chr17	6604360	6604360	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactggagccacagccaggCgaacagcagcatcaccagca	10	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6604360	A	A	6604360	3	1	229	1	0	0	0	0	1	0	0	0	14508	768	27	3	932	3	SLC13A5	17	6604360	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1538069	6604360	74590850	1668	174812											
CLEC10A	10462	broad.mit.edu	37	chr17	6980038	6980038	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccccccacacccatactcGgagggtctctcacctgcctg	8	19	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	6980038	T	T	6980038	1	4	229	0	1	0	0	0	0	0	0	0	3527	1131	39	1		1	CLEC10A	17	6980038	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	375678	6980038	74215172	1669	174813											
PHF23	79142	broad.mit.edu	37	chr17	7138983	7138983	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggcccccctaaccgccGggcctctggcctcagttcct	12	18	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7138983	T	T	7138983	2	4	229	1	0	0	0	0	0	0	0	1	11930	1115	39	1		1	PHF23	17	7138983	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	158945	7138983	74056227	1670	174814											
TP53	7157	broad.mit.edu	37	chr17	7574000	7574000	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccaaggcctcattcagctCtcggaacatctcgaagcgct	8	14	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7574000	A	A	7574000	4	1	229	1	0	0	0	0	0	1	0	0	16505	922	32	3	162	3	TP53	17	7574000	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	435017	7574000	73621210	1671	174815											
DNAH2	146754	broad.mit.edu	37	chr17	7681483	7681483	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgggccggctcgtcatcaCccccctgacggacaggtctg	12	17	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7681483	A	A	7681483	3	1	229	1	0	0	0	0	1	0	0	0	4642	507	18	3	5466	3	DNAH2	17	7681483	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	107483	7681483	73513727	1672	174816											
CNTROB	116840	broad.mit.edu	37	chr17	7851202	7851202	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtttttctctatcagtccCtagggaacttgacaatctta	7	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7851202	A	A	7851202	1	1	229	0	1	0	0	0	0	0	0	0	3683	696	24	2		2	CNTROB	17	7851202	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	169719	7851202	73344008	1673	174817											
C17orf59	54785	broad.mit.edu	37	chr17	8092892	8092892	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgcggcgtccgccgccCgcgccggactcggcactccc	15	20	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8092892	A	A	8092892	2	1	229	1	0	0	0	0	0	0	0	1	1883	639	23	1		1	C17orf59	17	8092892	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	241690	8092892	73102318	1674	174818											
MYH10	4628	broad.mit.edu	37	chr17	8379070	8379070	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaatctgcaggaggccccGggtgcattcctaactgtccc	11	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	8379070	T	T	8379070	1	4	229	0	1	0	0	0	0	0	0	0	10124	1131	39	1		1	MYH10	17	8379070	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	286178	8379070	72816140	1675	174819											
GAS7	8522	broad.mit.edu	37	chr17	9885023	9885023	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccctgggtttgctacatCagccaggtttaagacccagg	10	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	9885023	G	G	9885023	1	3	229	0	1	0	0	0	0	0	0	0	6312	841	29	4		4	GAS7	17	9885023	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1505953	9885023	71310187	1676	174820											
MYH13	8735	broad.mit.edu	37	chr17	10206531	10206531	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	accgcctcctcagcctgcctCttgtaagacttcactttggc	7	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10206531	T	T	10206531	2	4	229	1	0	0	0	0	0	0	0	1	10126	912	32	4		4	MYH13	17	10206531	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	321508	10206531	70988679	1677	174821											
MYH4	4622	broad.mit.edu	37	chr17	10355562	10355562	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgatctcctccagctccCgggagaggtcagagcgctgc	12	15	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10355562	A	A	10355562	3	1	229	1	0	0	0	0	1	0	0	0	10131	652	23	1	2441	1	MYH4	17	10355562	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	149031	10355562	70839648	1678	174822											
MYH1	4619	broad.mit.edu	37	chr17	10415792	10415792	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aatttcatgttcccataatgCatcacagcccctgtgagctt	6	12	2	1	rs147072526	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10415792	A	A	10415792	3	1	229	1	0	0	0	0	1	0	0	0	10123	710	25	3	4855	3	MYH1	17	10415792	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	60230	10415792	70779418	1679	174823											
MYH2	4620	broad.mit.edu	37	chr17	10440522	10440522	+	Intron	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	atcacattttgtaatacctaGagagtattattaacatttga	5	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	10440522	T	T	10440522	1	4	229	0	1	0	0	0	0	0	0	0	10129	957	33	3		3	MYH2	17	10440522	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	24730	10440522	70754688	1680	174824											
DNAH9	1770	broad.mit.edu	37	chr17	11656326	11656326	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttctaatcacctgtgaaaCcagtcacccagtgtggcagg	9	11	3	1	rs112150507		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11656326	A	A	11656326	1	1	229	0	1	0	0	0	0	0	0	0	4648	522	18	3		3	DNAH9	17	11656326	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1215804	11656326	69538884	1681	174825											
DNAH9	1770	broad.mit.edu	37	chr17	11778439	11778439	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgaccctcagctacaaggCatcaaatggatcaagaataa	8	9	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11778439	A	A	11778439	2	1	229	1	0	0	0	0	0	0	0	1	4648	697	25	3		3	DNAH9	17	11778439	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	122113	11778439	69416771	1682	174826											
ELAC2	60528	broad.mit.edu	37	chr17	12908230	12908230	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcccagaaacacagctcTtgccacaagatgcccatgtc	6	15	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12908230	G	G	12908230	1	3	229	0	1	0	0	0	0	0	0	0	5089	1624	56	5		5	ELAC2	17	12908230	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1129791	12908230	68286980	1683	174827											
MPRIP	23164	broad.mit.edu	37	chr17	17083969	17083969	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaatgcacccgcttccCggcccatgcaggaggtaaac	10	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17083969	A	A	17083969	1	1	229	0	1	0	0	0	0	0	0	0	9837	667	23	1		1	MPRIP	17	17083969	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	4175739	17083969	64111241	1684	174828											
FBXW10	10517	broad.mit.edu	37	chr17	18682180	18682180	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccagtccaccatacccCagcccatgattatccgctcc	6	18	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18682180	A	A	18682180	3	1	229	1	0	0	0	0	1	0	0	0	5820	595	21	2	2779	2	FBXW10	17	18682180	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1598211	18682180	62513030	1685	174829											
ULK2	9706	broad.mit.edu	37	chr17	19699554	19699554	+	Silent	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaaccaaggctaacaggttGgaagatgcttgagttttagg	13	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	19699554	C	C	19699554	2	2	229	1	0	0	0	0	0	0	0	1	17102	1335	47	4		4	ULK2	17	19699554	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1017374	19699554	61495656	1686	174830											
ULK2	9706	broad.mit.edu	37	chr17	19720108	19720108	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccaaaacaaagtcatcCgtgtcacaagaagagttctt	8	10	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19720108	A	A	19720108	2	1	229	1	0	0	0	0	0	0	0	1	17102	639	23	1		1	ULK2	17	19720108	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	20554	19720108	61475102	1687	174831											
USP22	23326	broad.mit.edu	37	chr17	20906349	20906349	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	cagctgcagataaggctactCgtattccaggaactgtttgt	10	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	20906349	A	A	20906349	4	1	229	1	0	0	0	0	0	1	0	0	17180	893	31	3	8	3	USP22	17	20906349	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1186241	20906349	60288861	1688	174832											
MAP2K3	5606	broad.mit.edu	37	chr17	21205438	21205438	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cccggcagcctggctgagctCtgggtgtcacccacagggag	15	14	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21205438	A	A	21205438	1	1	229	0	1	0	0	0	0	0	0	0	9330	928	32	3		3	MAP2K3	17	21205438	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	299089	21205438	59989772	1689	174833											
MAP2K3	5606	broad.mit.edu	37	chr17	21217467	21217467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacccccaggagcacccCttcttcaccttgcacaaaac	5	18	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21217467	A	A	21217467	2	1	229	1	0	0	0	0	0	0	0	1	9330	668	24	2		2	MAP2K3	17	21217467	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	12029	21217467	59977743	1690	174834											
KCNJ12	3768	broad.mit.edu	37	chr17	21318834	21318834	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aacattgagttcgccaacatGgacgagaagtcacagcgcta	10	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21318834	T	T	21318834	3	4	229	1	0	0	0	0	1	0	0	0	8116	1348	47	2	182	2	KCNJ12	17	21318834	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	101367	21318834	59876376	1691	174835											
SARM1	23098	broad.mit.edu	37	chr17	26686461	26686461	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcagtacgtggtctaggtAgcccctcagagtagggccct	12	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26686461	T	T	26686461	1	4	229	0	1	0	0	0	0	0	0	0	13954	435	15	5		5	SARM1	17	26686461	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	5367627	26686461	54508749	1692	174836											
SLC13A2	9058	broad.mit.edu	37	chr17	26817355	26817355	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	gaccatttccatccagtttcGagagcccaggggaatgccag	11	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26817355	T	T	26817355	1	4	229	0	1	0	0	0	0	0	0	0	14505	1059	37	3		3	SLC13A2	17	26817355	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	130894	26817355	54377855	1693	174837											
SPAG5	10615	broad.mit.edu	37	chr17	26905631	26905631	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaccatttctcatacttGggatcctggctgaccagtaa	8	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26905631	T	T	26905631	1	4	229	0	1	0	0	0	0	0	0	0	15097	1363	47	2		2	SPAG5	17	26905631	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	88276	26905631	54289579	1694	174838											
SPAG5	10615	broad.mit.edu	37	chr17	26912931	26912931	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgccttgcctcctccCtttctgctttgaggctctgg	9	15	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26912931	A	A	26912931	3	1	229	1	0	0	0	0	1	0	0	0	15097	681	24	2	1962	2	SPAG5	17	26912931	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	7300	26912931	54282279	1695	174839											
RAB34	83871	broad.mit.edu	37	chr17	27042267	27042267	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcacactggaagggtcattCtccttcagggcatcggccag	12	12	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	27042267	T	T	27042267	2	4	229	1	0	0	0	0	0	0	0	1	13032	912	32	4		4	RAB34	17	27042267	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	129336	27042267	54152943	1696	174840											
MYO18A	399687	broad.mit.edu	37	chr17	27419898	27419898	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttgagctgggcaatctctCgcttgctgggagcactgttc	12	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	27419898	A	A	27419898	3	1	229	1	0	0	0	0	1	0	0	0	10159	884	31	3	1156	3	MYO18A	17	27419898	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	377631	27419898	53775312	1697	174841											
MYO18A	399687	broad.mit.edu	37	chr17	27420399	27420399	+	Missense_Mutation	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttctctcgcagaaccttcTgcttgtcctcatactcttcc	5	16	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	27420399	C	C	27420399	3	2	229	1	0	0	0	0	1	0	0	0	10159	1580	55	5	1340	5	MYO18A	17	27420399	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	501	27420399	53774811	1698	174842											
EFCAB5	374786	broad.mit.edu	37	chr17	28380486	28380486	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaacaccatcaccaaaccCgccagaacagcagagaggag	8	14	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	28380486	A	A	28380486	3	1	229	1	0	0	0	0	1	0	0	0	4978	652	23	1	1552	1	EFCAB5	17	28380486	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	960087	28380486	52814724	1699	174843											
TMIGD1	388364	broad.mit.edu	37	chr17	28645742	28645743	+	Intron	DNP	CC	AA	AA													tgactttgccaagaagggttCctaactgaagtcacttatat							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	AA	28645743	AA	AA	28645742	1	1	229	0	1	0	0	0	0	0	0	0	16353	870	30	3		3	TMIGD1	17	28645742	Intron	DNP	CC	TCGA-91-6836-01A-21D-1855-08	265256	28645742	52549468	1700	174844											
SUZ12	23512	broad.mit.edu	37	chr17	30302592	30302592	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaaacccggaaatttccCgtcccttgcagtttccagta	6	13	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30302592	A	A	30302592	3	1	229	1	0	0	0	0	1	0	0	0	15534	652	23	1	709	1	SUZ12	17	30302592	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1656850	30302592	50892618	1701	174845											
TMEM132E	124842	broad.mit.edu	37	chr17	32953231	32953231	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagctaccgcctgtcgcaCacgcggctggccttcttcct	10	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32953231	A	A	32953231	3	1	229	1	0	0	0	0	1	0	0	0	16171	477	17	3	159	3	TMEM132E	17	32953231	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2650639	32953231	48241979	1702	174846											
CCL3	6348	broad.mit.edu	37	chr17	34416670	34416670	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaggaagagaataagccCgagtcacagctcagaagaaa	11	7	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	34416670	A	A	34416670	1	1	229	0	1	0	0	0	0	0	0	0	2929	667	23	1		1	CCL3	17	34416670	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1463439	34416670	46778540	1703	174847											
TBC1D3C	414060	broad.mit.edu	37	chr17	34642520	34642520	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	taacaattgtcaggatcatcAtgaggattagattagttagt	9	4	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	34642520	T	T	34642520	1	4	229	0	1	0	0	0	0	0	0	0	15741	232	8	5		5	TBC1D3C	17	34642520	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	225850	34642520	46552690	1704	174848											
HNF1B	6928	broad.mit.edu	37	chr17	36093604	36093604	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttgctggggttcttttgcCgatcgtaggcctggtacaag	13	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36093604	A	A	36093604	3	1	229	1	0	0	0	0	1	0	0	0	7319	652	23	1	946	1	HNF1B	17	36093604	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1451084	36093604	45101606	1705	174849											
TBC1D3	729873	broad.mit.edu	37	chr17	36358763	36358763	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	attaaattataaataactgtActaataattgaccagaaatg	4	4	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36358763	T	T	36358763	1	4	229	0	1	0	0	0	0	0	0	0	15739	406	14	5		5	TBC1D3	17	36358763	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	265159	36358763	44836447	1706	174850											
GPR179	440435	broad.mit.edu	37	chr17	36485943	36485943	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgttccctgctgccctccCgttgacagacttggagcatc	9	15	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36485943	A	A	36485943	3	1	229	1	0	0	0	0	1	0	0	0	6739	652	23	1	3598	1	GPR179	17	36485943	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	127180	36485943	44709267	1707	174851											
CWC25	54883	broad.mit.edu	37	chr17	36958280	36958280	+	3'UTR	SNP	G	A	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcatttgaactcttataaaGagaattaaggggtcagcagc	10	6	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36958280	A	A	36958280	1	1	229	0	1	0	0	0	0	0	0	0	4102	957	33	4		4	CWC25	17	36958280	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	472337	36958280	44236930	1708	174852											
PLXDC1	57125	broad.mit.edu	37	chr17	37296055	37296055	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcacggtccctttggcaGcccatccagagcctgggccc	11	19	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37296055	T	T	37296055	3	4	229	1	0	0	0	0	1	0	0	0	12212	971	34	3	1447	3	PLXDC1	17	37296055	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	337775	37296055	43899155	1709	174853											
ERBB2	2064	broad.mit.edu	37	chr17	37868114	37868114	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcttgtgcctgggcacGgtaatgctgctcatggtggt	13	9	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37868114	T	T	37868114	1	4	229	0	1	0	0	0	0	0	0	0	5248	1131	39	1		1	ERBB2	17	37868114	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	572059	37868114	43327096	1710	174854											
TOP2A	7153	broad.mit.edu	37	chr17	38560480	38560480	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacttctcgcttgtcattcCgtttgaagcaagtaaacaaa	6	9	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38560480	A	A	38560480	3	1	229	1	0	0	0	0	1	0	0	0	16489	652	23	1	2456	1	TOP2A	17	38560480	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	692366	38560480	42634730	1711	174855											
KRT23	25984	broad.mit.edu	37	chr17	39086439	39086439	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atttagaggtgaatcttttaCtttttaggtttaaagagagc	9	3	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39086439	A	A	39086439	1	1	229	0	1	0	0	0	0	0	0	0	8531	580	20	3		3	KRT23	17	39086439	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	525959	39086439	42108771	1712	174856											
KRTAP9-2	83899	broad.mit.edu	37	chr17	39383291	39383291	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	accccacgactgtctgcctgCctggttgcctaaaccagagc	9	16	1	1	rs145566824		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39383291	G	G	39383291	3	3	229	1	0	0	0	0	1	0	0	0	8645	739	26	4	387	4	KRTAP9-2	17	39383291	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	296852	39383291	41811919	1713	174857											
KRT38	8687	broad.mit.edu	37	chr17	39593787	39593787	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtggagcacggattgcaGgggagtctgcagagagacaa	17	7	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39593787	A	A	39593787	2	1	229	1	0	0	0	0	0	0	0	1	8546	987	35	4		4	KRT38	17	39593787	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	210496	39593787	41601423	1714	174858											
JUP	3728	broad.mit.edu	37	chr17	39912311	39912311	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactggggtacatgtggatgCcacacagcagttgccactgg	14	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39912311	A	A	39912311	1	1	229	0	1	0	0	0	0	0	0	0	8042	754	26	3		3	JUP	17	39912311	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	318524	39912311	41282899	1715	174859											
KAT2A	2648	broad.mit.edu	37	chr17	40268990	40268990	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccacacatcctgctgctcCgaactggcccaaactcagga	8	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40268990	A	A	40268990	1	1	229	0	1	0	0	0	0	0	0	0	8051	667	23	1		1	KAT2A	17	40268990	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	356679	40268990	40926220	1716	174860											
HSPB9	94086	broad.mit.edu	37	chr17	40275062	40275062	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcccacggcttcgcccCggaggaactggtggtgcagg	17	12	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40275062	A	A	40275062	3	1	229	1	0	0	0	0	1	0	0	0	7494	652	23	1	196	1	HSPB9	17	40275062	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6072	40275062	40920148	1717	174861											
AARSD1	80755	broad.mit.edu	37	chr17	41107791	41107791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tacgattgcatcttatctccCagaggtaagagattatgtcg	9	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41107791	A	A	41107791	1	1	229	0	1	0	0	0	0	0	0	0	21	609	21	2		2	AARSD1	17	41107791	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	832729	41107791	40087419	1718	174862											
AARSD1	80755	broad.mit.edu	37	chr17	41131390	41131390	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttactgtcccatttcaccCttaccttggagttcactttg	5	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41131390	A	A	41131390	1	1	229	0	1	0	0	0	0	0	0	0	21	696	24	2		2	AARSD1	17	41131390	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	23599	41131390	40063820	1719	174863											
RUNDC1	146923	broad.mit.edu	37	chr17	41142355	41142355	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtgggaagccccttgcAgacaggtggtggacactgtg	16	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	41142355	G	G	41142355	3	3	229	1	0	0	0	0	1	0	0	0	13853	188	7	5	892	5	RUNDC1	17	41142355	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	10965	41142355	40052855	1720	174864											
DBF4B	80174	broad.mit.edu	37	chr17	42825779	42825779	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacccccatcagccctccCatcccagggcagcatctccc	6	22	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42825779	A	A	42825779	3	1	229	1	0	0	0	0	1	0	0	0	4282	594	21	2	1230	2	DBF4B	17	42825779	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1683424	42825779	38369431	1721	174865											
SP6	80320	broad.mit.edu	37	chr17	45925675	45925675	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcggggaggggtagtcccCggcctcagggctcgtgtggc	19	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45925675	A	A	45925675	3	1	229	1	0	0	0	0	1	0	0	0	15082	652	23	1	1013	1	SP6	17	45925675	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3099896	45925675	35269535	1722	174866											
SKAP1	8631	broad.mit.edu	37	chr17	46262150	46262150	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttggaatctcttcgcaGgtggggggccatccgtacac	12	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46262150	A	A	46262150	2	1	229	1	0	0	0	0	0	0	0	1	14468	991	35	4		4	SKAP1	17	46262150	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	336475	46262150	34933060	1723	174867											
SKAP1	8631	broad.mit.edu	37	chr17	46262238	46262238	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caggaaagctccctgtatccCtagagagatgcaactgccaa	9	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46262238	T	T	46262238	1	4	229	0	1	0	0	0	0	0	0	0	14468	696	24	4		4	SKAP1	17	46262238	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	88	46262238	34932972	1724	174868											
B4GALNT2	124872	broad.mit.edu	37	chr17	47218740	47218740	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agaactcccaagtcctgcccCgggtgtccagaagctgaagc	11	14	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47218740	A	A	47218740	3	1	229	1	0	0	0	0	1	0	0	0	1272	652	23	1	350	1	B4GALNT2	17	47218740	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	956502	47218740	33976470	1725	174869											
ZNF652	22834	broad.mit.edu	37	chr17	47394798	47394798	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtcatcagaattctccCggtcttccttaacagcatgc	7	13	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47394798	A	A	47394798	3	1	229	1	0	0	0	0	1	0	0	0	18192	652	23	1	1550	1	ZNF652	17	47394798	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	176058	47394798	33800412	1726	174870											
ANKFN1	162282	broad.mit.edu	37	chr17	54517674	54517674	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctctctctccctgccccCctactccctccagtggaatg	5	19	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54517674	T	T	54517674	1	4	229	0	1	0	0	0	0	0	0	0	625	638	22	4		4	ANKFN1	17	54517674	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	7122876	54517674	26677536	1727	174871											
MSI2	124540	broad.mit.edu	37	chr17	55478603	55478603	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccttagacatctaaacGcccgcgccatgcagcttgaa	8	14	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55478603	T	T	55478603	1	4	229	0	1	0	0	0	0	0	0	0	9970	1102	38	3		3	MSI2	17	55478603	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	960929	55478603	25716607	1728	174872											
MSI2	124540	broad.mit.edu	37	chr17	55754428	55754428	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcactctgaggtattacCgtctctgccatgtgtctctg	8	12	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55754428	A	A	55754428	1	1	229	0	1	0	0	0	0	0	0	0	9970	667	23	1		1	MSI2	17	55754428	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	275825	55754428	25440782	1729	174873											
VEZF1	7716	broad.mit.edu	37	chr17	56051993	56051993	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atattcactggggcagtgacGggggtggggaggttgactgg	20	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56051993	T	T	56051993	2	4	229	1	0	0	0	0	0	0	0	1	17282	1103	39	1		1	VEZF1	17	56051993	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	297565	56051993	25143217	1730	174874											
C17orf47	284083	broad.mit.edu	37	chr17	56620409	56620409	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacatgtaagtaatttctGggggtttttgggtttgctgt	15	3	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56620409	T	T	56620409	3	4	229	1	0	0	0	0	1	0	0	0	1874	1348	47	2	581	2	C17orf47	17	56620409	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	568416	56620409	24574801	1731	174875											
C17orf47	284083	broad.mit.edu	37	chr17	56621647	56621647	+	5'UTR	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaccctgttttaaagctgCtgtttcttgggctcccacaa	7	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56621647	T	T	56621647	1	4	229	0	1	0	0	0	0	0	0	0	1874	812	28	4		4	C17orf47	17	56621647	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	1238	56621647	24573563	1732	174876											
TEX14	56155	broad.mit.edu	37	chr17	56688569	56688569	+	Silent	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	agcctcgcttcacctggggaGatgatatggacagcatagga	13	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56688569	T	T	56688569	2	4	229	1	0	0	0	0	0	0	0	1	15900	932	33	3		3	TEX14	17	56688569	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	66922	56688569	24506641	1733	174877											
CA4	762	broad.mit.edu	37	chr17	58236701	58236701	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcacggtgataaagtccggGgccccgggtcggccgctgcc	16	15	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58236701	T	T	58236701	2	4	229	1	0	0	0	0	0	0	0	1	2544	1219	43	2		2	CA4	17	58236701	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1548132	58236701	22958509	1734	174878											
USP32	84669	broad.mit.edu	37	chr17	58259005	58259005	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccaatctggggcagccGgagcctccctttgctcctcc	11	17	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58259005	T	T	58259005	2	4	229	1	0	0	0	0	0	0	0	1	17190	1115	39	1		1	USP32	17	58259005	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	22304	58259005	22936205	1735	174879											
USP32	84669	broad.mit.edu	37	chr17	58299831	58299831	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctctccacacaggttctGggaccatttcatagtctctt	8	12	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	58299831	T	T	58299831	3	4	229	1	0	0	0	0	1	0	0	0	17190	1348	47	2	3206	2	USP32	17	58299831	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	40826	58299831	22895379	1736	174880											
NACA2	342538	broad.mit.edu	37	chr17	59668091	59668091	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgttttcttgaatgtttcCgacagcttcaccttgaactc	7	10	2	2	rs148387940	byFrequency	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59668091	A	A	59668091	4	1	229	1	0	0	0	0	0	1	0	0	10228	661	23	1	200	1	NACA2	17	59668091	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1368260	59668091	21527119	1737	174881											
KCNH6	81033	broad.mit.edu	37	chr17	61601589	61601589	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgaactcttcggctactccCgagtggaggtgatgcagcaa	13	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61601589	A	A	61601589	2	1	229	1	0	0	0	0	0	0	0	1	8106	644	23	1		1	KCNH6	17	61601589	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1933498	61601589	19593621	1738	174882											
NOL11	25926	broad.mit.edu	37	chr17	65735842	65735842	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctaggccgtaggaatcCcttcctcataaaaccaaacc	5	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	65735842	T	T	65735842	1	4	229	0	1	0	0	0	0	0	0	0	10616	638	22	4		4	NOL11	17	65735842	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	4134253	65735842	15459368	1739	174883											
BPTF	2186	broad.mit.edu	37	chr17	65850116	65850116	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	attggaagaaaaagacatccCgccccttgaatttcccaagt	7	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	65850116	A	A	65850116	3	1	229	1	0	0	0	0	1	0	0	0	1504	652	23	1	680	1	BPTF	17	65850116	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	114274	65850116	15345094	1740	174884											
ABCA9	10350	broad.mit.edu	37	chr17	66981140	66981140	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaacgggaggaacagcCcctctggttcccatctacgg	12	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	66981140	A	A	66981140	1	1	229	0	1	0	0	0	0	0	0	0	39	638	22	2		2	ABCA9	17	66981140	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1131024	66981140	14214070	1741	174885											
ABCA9	10350	broad.mit.edu	37	chr17	67003762	67003762	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatagagtagactttaaaTagtactttgattatcttaga	6	5	2	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	67003762	C	C	67003762	1	2	229	0	1	0	0	0	0	0	0	0	39	1421	49	5		5	ABCA9	17	67003762	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	22622	67003762	14191448	1742	174886											
ABCA10	10349	broad.mit.edu	37	chr17	67189812	67189812	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ttactttaaggagtttttacTctctaaaaatgaaaaggatt	6	4	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67189812	A	A	67189812	1	1	229	0	1	0	0	0	0	0	0	0	29	1566	54	5		5	ABCA10	17	67189812	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	186050	67189812	14005398	1743	174887											
SDK2	54549	broad.mit.edu	37	chr17	71379954	71379954	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctgagagctccagagcGggaaggtgagggtgaccgcc	18	9	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	71379954	T	T	71379954	1	4	229	0	1	0	0	0	0	0	0	0	14082	1131	39	1		1	SDK2	17	71379954	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	4190142	71379954	9815256	1744	174888											
TTYH2	94015	broad.mit.edu	37	chr17	72246134	72246134	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atccaggtcgcggggctgctGcagtttgccgtgcccctctt	13	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72246134	T	T	72246134	2	4	229	1	0	0	0	0	0	0	0	1	16866	1306	46	3		3	TTYH2	17	72246134	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	866180	72246134	8949076	1745	174889											
KIF19	124602	broad.mit.edu	37	chr17	72348812	72348812	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagcagaccacagcttaacCccgaggacccaaacacaagc	7	16	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	72348812	A	A	72348812	1	1	229	0	1	0	0	0	0	0	0	0	8352	638	22	2		2	KIF19	17	72348812	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	102678	72348812	8846398	1746	174890											
CD300LB	124599	broad.mit.edu	37	chr17	72521911	72521911	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcaacgatcactttcacttGagtcccaaggtcaggtcctc	8	13	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72521911	T	T	72521911	3	4	229	1	0	0	0	0	1	0	0	0	3029	1299	45	3	271	3	CD300LB	17	72521911	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	173099	72521911	8673299	1747	174891											
CD300LF	146722	broad.mit.edu	37	chr17	72700976	72700976	+	Intron	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaaaacacaaattcatgTgctgtcacctcccaccccaa	5	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	72700976	G	G	72700976	1	3	229	0	1	0	0	0	0	0	0	0	3031	1711	59	5		5	CD300LF	17	72700976	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	179065	72700976	8494234	1748	174892											
RAB37	326624	broad.mit.edu	37	chr17	72741444	72741444	+	Splice_Site	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccattgtctcttcttcaaGggaactgaaataccgggccg	10	12	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	72741444	T	T	72741444	5	4	229	1	0	0	0	0	0	0	1	0	13035	1014	35	2	903	2	RAB37	17	72741444	Splice_Site	SNP	G	TCGA-91-6836-01A-21D-1855-08	40468	72741444	8453766	1749	174893											
KCTD2	23510	broad.mit.edu	37	chr17	73043644	73043644	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaagtcatttctctgccGcctctgctgccaggaggacc	10	16	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73043644	A	A	73043644	3	1	229	1	0	0	0	0	1	0	0	0	8177	1087	38	4	301	4	KCTD2	17	73043644	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	302200	73043644	8151566	1750	174894											
ITGB4	3691	broad.mit.edu	37	chr17	73726951	73726951	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagacctggccttctctccCgcagaagcttcacacctatt	7	15	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	73726951	A	A	73726951	1	1	229	0	1	0	0	0	0	0	0	0	7967	667	23	1		1	ITGB4	17	73726951	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	683307	73726951	7468259	1751	174895											
QRICH2	84074	broad.mit.edu	37	chr17	74275186	74275186	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcggatggaatggtgccCaggtaggcctggacccgcgg	20	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	74275186	A	A	74275186	3	1	229	1	0	0	0	0	1	0	0	0	12988	594	21	2	661	2	QRICH2	17	74275186	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	548235	74275186	6920024	1752	174896											
UBE2O	63893	broad.mit.edu	37	chr17	74394977	74394977	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtccaggtggtgcacaGggaagaggtcgttggagcgg	19	6	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	74394977	T	T	74394977	3	4	229	1	0	0	0	0	1	0	0	0	16994	1000	35	2	2190	2	UBE2O	17	74394977	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	119791	74394977	6800233	1753	174897											
MGAT5B	146664	broad.mit.edu	37	chr17	74936390	74936390	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagctgcctcctgtgaaTatcccgaagcctcaccttgt	8	16	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	74936390	C	C	74936390	1	2	229	0	1	0	0	0	0	0	0	0	9642	1421	49	5		5	MGAT5B	17	74936390	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	541413	74936390	6258820	1754	174898											
DNAH17	8632	broad.mit.edu	37	chr17	76503452	76503452	+	Splice_Site	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	actgcatcttccatcaaggcCtgggaagagaaggggatcgc	13	10	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76503452	A	A	76503452	5	1	229	1	0	0	0	0	0	0	1	0	4641	695	24	2	9016	2	DNAH17	17	76503452	Splice_Site	SNP	C	TCGA-91-6836-01A-21D-1855-08	1567062	76503452	4691758	1755	174899											
CYTH1	9267	broad.mit.edu	37	chr17	76677078	76677078	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggagtcctccacttccCggatactcagattctctaaa	6	12	2	1	rs142007379		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	76677078	A	A	76677078	3	1	229	1	0	0	0	0	1	0	0	0	4236	652	23	1	270	1	CYTH1	17	76677078	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	173626	76677078	4518132	1756	174900											
ENGASE	64772	broad.mit.edu	37	chr17	77073825	77073825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcttggcgtggaagcccCgcttggaggatggctttaat	14	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77073825	A	A	77073825	3	1	229	1	0	0	0	0	1	0	0	0	5160	652	23	1	305	1	ENGASE	17	77073825	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	396747	77073825	4121385	1757	174901											
GAA	2548	broad.mit.edu	37	chr17	78092446	78092446	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcatctctctctgctcgGcccagaacacgatcgtgaat	7	13	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78092446	T	T	78092446	1	4	229	0	1	0	0	0	0	0	0	0	6207	1218	42	3		3	GAA	17	78092446	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1018621	78092446	3102764	1758	174902											
EIF4A3	9775	broad.mit.edu	37	chr17	78118070	78118070	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaaaacaaaaaattagccCtcaccacaatgacagcatag	4	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78118070	A	A	78118070	1	1	229	0	1	0	0	0	0	0	0	0	5068	696	24	2		2	EIF4A3	17	78118070	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	25624	78118070	3077140	1759	174903											
CARD14	79092	broad.mit.edu	37	chr17	78172397	78172397	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagattgtgatggtgagcCgtgcgaggcccctcctgtcc	13	14	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78172397	T	T	78172397	1	4	229	0	1	0	0	0	0	0	0	0	2672	652	23	4		4	CARD14	17	78172397	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	54327	78172397	3022813	1760	174904											
RNF213	57674	broad.mit.edu	37	chr17	78363858	78363858	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacaaagcggatctgagccCggaaaatgctaagctcctca	10	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	78363858	A	A	78363858	3	1	229	1	0	0	0	0	1	0	0	0	13588	652	23	1	15913	1	RNF213	17	78363858	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	191461	78363858	2831352	1761	174905											
RPTOR	57521	broad.mit.edu	37	chr17	78899232	78899232	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccgccacggtgcagacGgggttctgcgactggagcgc	15	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	78899232	T	T	78899232	2	4	229	1	0	0	0	0	0	0	0	1	13776	1103	39	1		1	RPTOR	17	78899232	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	535374	78899232	2295978	1762	174906											
SLC25A10	1468	broad.mit.edu	37	chr17	79686897	79686897	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggagacagcgaagctcGggcctctggccttttacaag	13	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79686897	T	T	79686897	3	4	229	1	0	0	0	0	1	0	0	0	14586	1116	39	1	780	1	SLC25A10	17	79686897	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	787665	79686897	1508313	1763	174907											
P4HB	5034	broad.mit.edu	37	chr17	79801871	79801871	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtctcggcagcgcccGggtctggctttgcgtattac	16	11	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79801871	T	T	79801871	1	4	229	0	1	0	0	0	0	0	0	0	11453	1131	39	1		1	P4HB	17	79801871	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	114974	79801871	1393339	1764	174908											
P4HB	5034	broad.mit.edu	37	chr17	79804764	79804764	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccacacttgtcacctcGggaagagttgtactgctccc	10	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79804764	T	T	79804764	1	4	229	0	1	0	0	0	0	0	0	0	11453	1131	39	1		1	P4HB	17	79804764	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2893	79804764	1390446	1765	174909											
P4HB	5034	broad.mit.edu	37	chr17	79804941	79804941	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcacctccaaaaatcttcGgggctgtctgtgttataaac	7	10	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	79804941	T	T	79804941	3	4	229	1	0	0	0	0	1	0	0	0	11453	1116	39	1	813	1	P4HB	17	79804941	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	177	79804941	1390269	1766	174910											
HEXDC	284004	broad.mit.edu	37	chr17	80394975	80394975	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggctctgggtacagccccGggaggcgtgtccagggccgt	17	12	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	80394975	T	T	80394975	1	4	229	0	1	0	0	0	0	0	0	0	7142	1131	39	1		1	HEXDC	17	80394975	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	590034	80394975	800235	1767	174911											
EPB41L3	23136	broad.mit.edu	37	chr18	5419871	5419871	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcgtactggccagtacCaacctctgcagcagacatag	11	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5419871	A	A	5419871	3	1	229	1	0	0	0	0	1	0	0	0	5196	594	21	2	1962	2	EPB41L3	18	5419871	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08		5419871	72657377	1768	174912											
CTAGE1	64693	broad.mit.edu	37	chr18	19999170	19999170	+	5'Flank	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccgtgatcagaatcacGttcacatgcatgctttgcag	8	13	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	19999170	T	T	19999170	1	4	229	0	1	0	0	0	0	0	0	0	4026	1160	40	3		3	CTAGE1	18	19999170	5'Flank	SNP	G	TCGA-91-6836-01A-21D-1855-08	14579299	19999170	58078078	1769	174913											
C18orf34	374864	broad.mit.edu	37	chr18	30518004	30518004	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttttcgcatgtgccatctgTcaaagtctggaagaaaccta	9	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	30518004	A	A	30518004	3	1	229	1	0	0	0	0	1	0	0	0	1920	1667	58	5	32	5	C18orf34	18	30518004	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	10518834	30518004	47559244	1770	174914											
SLC39A6	25800	broad.mit.edu	37	chr18	33706813	33706813	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttgtagatgatattgcCgtgtggaaattgccaagtca	12	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33706813	A	A	33706813	3	1	229	1	0	0	0	0	1	0	0	0	14736	652	23	1	2157	1	SLC39A6	18	33706813	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3188809	33706813	44370435	1771	174915											
SYT4	6860	broad.mit.edu	37	chr18	40850301	40850301	+	3'UTR	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	taagttccaactcacggctaGgatgctaaccatcacagagc	8	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40850301	T	T	40850301	1	4	229	0	1	0	0	0	0	0	0	0	15595	1015	35	2		2	SYT4	18	40850301	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	7143488	40850301	37226947	1772	174916											
ATP5A1	498	broad.mit.edu	37	chr18	43668094	43668096	+	In_Frame_Del	DEL	CAC	-	-													cctgcatctgtaagtctcttCaccaactgggcaacagtgga							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	43668096	-	-	43668094	7	5	229	1	0	1	0	1	0	0	0	0	1151	813	29	0	909	0	ATP5A1	18	43668094	In_Frame_Del	DEL	CAC	TCGA-91-6836-01A-21D-1855-08	2817793	43668094	34409154	1773	174917											
ACAA2	10449	broad.mit.edu	37	chr18	47340589	47340589	+	5'Flank	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggcggcgccgcttgccCggagcctgagaggattatga	17	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47340589	A	A	47340589	1	1	229	0	1	0	0	0	0	0	0	0	105	667	23	1		1	ACAA2	18	47340589	5'Flank	SNP	C	TCGA-91-6836-01A-21D-1855-08	3672495	47340589	30736659	1774	174918											
GRP	2922	broad.mit.edu	37	chr18	56892617	56892617	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatttattctgcatttaggAggaagcagcacaaacacaat	8	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56892617	T	T	56892617	1	4	229	0	1	0	0	0	0	0	0	0	6871	319	11	5		5	GRP	18	56892617	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	9552028	56892617	21184631	1775	174919											
CDH20	28316	broad.mit.edu	37	chr18	59174536	59174536	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	attttgcacagcactcctgaTatgataatgatgaggcattt	8	7	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	59174536	A	A	59174536	1	1	229	0	1	0	0	0	0	0	0	0	3136	1421	49	5		5	CDH20	18	59174536	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	2281919	59174536	18902712	1776	174920											
KDSR	2531	broad.mit.edu	37	chr18	61005993	61005993	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcagaaatatagtacTacaaacacaaatagtacaga	4	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	61005993	C	C	61005993	1	2	229	0	1	0	0	0	0	0	0	0	8210	1537	53	5		5	KDSR	18	61005993	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1831457	61005993	17071255	1777	174921											
RTTN	25914	broad.mit.edu	37	chr18	67776806	67776806	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagagtgtgagctccatccCggaaacgcagtgaggttagc	15	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	67776806	A	A	67776806	2	1	229	1	0	0	0	0	0	0	0	1	13848	639	23	1		1	RTTN	18	67776806	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	6770813	67776806	10300442	1778	174922											
CBLN2	147381	broad.mit.edu	37	chr18	70205952	70205952	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agctataaatcccttttctcGgtgctacaaatatactggaa	6	9	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	70205952	T	T	70205952	3	4	229	1	0	0	0	0	1	0	0	0	2731	1116	39	1	269	1	CBLN2	18	70205952	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2429146	70205952	7871296	1779	174923											
ATP9B	374868	broad.mit.edu	37	chr18	77013287	77013287	+	Intron	DEL	T	-	-													aataccaataaattttaaagTtttttttttatgtcatcact							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	77013287	-	-	77013287	6	5	229	0	1	1	0	1	0	0	0	0	1203	1740	60	0		0	ATP9B	18	77013287	Intron	DEL	T	TCGA-91-6836-01A-21D-1855-08	6807335	77013287	1063961	1780	174924											
CTDP1	9150	broad.mit.edu	37	chr18	77470359	77470359	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaggctttttagacccCgagaagaagcttttttctca	7	10	1	3	rs140645111	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	77470359	A	A	77470359	2	1	229	1	0	0	0	0	0	0	0	1	4036	639	23	1		1	CTDP1	18	77470359	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	457072	77470359	606889	1781	174925											
ABCA7	10347	broad.mit.edu	37	chr19	1056968	1056968	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgccatgtcctttgtccCggccagcttcactcttgtcc	7	16	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1056968	A	A	1056968	3	1	229	1	0	0	0	0	1	0	0	0	37	652	23	1	4779	1	ABCA7	19	1056968	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08		1056968	58072015	1782	174926											
C19orf26	255057	broad.mit.edu	37	chr19	1231322	1231322	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agccggcatgtgcctccaccCgctccacacacacacagaat	7	18	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	1231322	A	A	1231322	1	1	229	0	1	0	0	0	0	0	0	0	1935	667	23	1		1	C19orf26	19	1231322	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	174354	1231322	57897661	1783	174927											
DOT1L	84444	broad.mit.edu	37	chr19	2226932	2226932	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgggccccttcccgccggGaccgcagttcgcgctcggcc	13	20	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	2226932	C	C	2226932	3	2	229	1	0	0	0	0	1	0	0	0	4749	1174	41	4	4518	4	DOT1L	19	2226932	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	995610	2226932	56902051	1784	174928											
LMNB2	84823	broad.mit.edu	37	chr19	2438277	2438277	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttttggccactgcatgacCgtcctcggcctgggagacac	11	14	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	2438277	A	A	2438277	3	1	229	1	0	0	0	0	1	0	0	0	8924	652	23	1	1330	1	LMNB2	19	2438277	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	211345	2438277	56690706	1785	174929											
RANBP3	8498	broad.mit.edu	37	chr19	5925686	5925686	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatagttcgttgcggttggCgtgtctgcgctggggtgtcc	16	8	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	5925686	A	A	5925686	2	1	229	1	0	0	0	0	0	0	0	1	13137	755	27	3		3	RANBP3	19	5925686	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3487409	5925686	53203297	1786	174930											
TNFSF14	8740	broad.mit.edu	37	chr19	6665094	6665094	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggagctgctggtggccCgtccgcagggtgactgctgg	18	13	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	6665094	A	A	6665094	3	1	229	1	0	0	0	0	1	0	0	0	16430	652	23	1	160	1	TNFSF14	19	6665094	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	739408	6665094	52463889	1787	174931											
PNPLA6	10908	broad.mit.edu	37	chr19	7619975	7619975	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	caagctggtgaggagcgggcCggcccccaccttctaggggc	16	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	7619975	T	T	7619975	1	4	229	0	1	0	0	0	0	0	0	0	12264	667	23	4		4	PNPLA6	19	7619975	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	954881	7619975	51509008	1788	174932											
C19orf59	199675	broad.mit.edu	37	chr19	7743312	7743312	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cggagggtctgagggagaccCgtggggtcatggtgggggtc	22	7	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7743312	A	A	7743312	1	1	229	0	1	0	0	0	0	0	0	0	1959	667	23	1		1	C19orf59	19	7743312	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	123337	7743312	51385671	1789	174933											
SNAPC2	6618	broad.mit.edu	37	chr19	7987216	7987216	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccgaagtggccgcagcccCgagctctcagcagctggtga	13	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	7987216	A	A	7987216	2	1	229	1	0	0	0	0	0	0	0	1	14949	639	23	1		1	SNAPC2	19	7987216	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	243904	7987216	51141767	1790	174934											
MYO1F	4542	broad.mit.edu	37	chr19	8595219	8595219	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgatgctgttgcgcctcCgctccttcttgttcagcagg	11	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	8595219	A	A	8595219	3	1	229	1	0	0	0	0	1	0	0	0	10167	652	23	1	1139	1	MYO1F	19	8595219	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	608003	8595219	50533764	1791	174935											
MUC16	94025	broad.mit.edu	37	chr19	9017374	9017374	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagactgttcctgtccagGgtgtaggggcccagctcttt	13	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	9017374	T	T	9017374	2	4	229	1	0	0	0	0	0	0	0	1	10067	1219	43	2		2	MUC16	19	9017374	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	422155	9017374	50111609	1792	174936											
OR7G3	390883	broad.mit.edu	37	chr19	9236946	9236946	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccaccagctgatggaatTttcatgacagaggagacaat	9	8	1	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	9236946	C	C	9236946	2	2	229	1	0	0	0	0	0	0	0	1	11318	1838	64	5		5	OR7G3	19	9236946	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	219572	9236946	49892037	1793	174937											
COL5A3	50509	broad.mit.edu	37	chr19	10083744	10083744	+	Intron	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcagagtggcctggactctCcagggatcaaggattagcat	13	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10083744	A	A	10083744	1	1	229	0	1	0	0	0	0	0	0	0	3730	870	30	3		3	COL5A3	19	10083744	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	846798	10083744	49045239	1794	174938											
TMED1	11018	broad.mit.edu	37	chr19	10945774	10945774	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagcacagcttgtagtcccCggcctccgttggctccaccc	9	17	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	10945774	A	A	10945774	3	1	229	1	0	0	0	0	1	0	0	0	16125	652	23	1	390	1	TMED1	19	10945774	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	862030	10945774	48183209	1795	174939											
ZNF442	79973	broad.mit.edu	37	chr19	12462999	12462999	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	tcactgaattgtagctgactCttgaacaacataggtttgta	8	7	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	12462999	G	G	12462999	1	3	229	0	1	0	0	0	0	0	0	0	18042	928	32	4		4	ZNF442	19	12462999	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1517225	12462999	46665984	1796	174940											
FARSA	2193	broad.mit.edu	37	chr19	13039755	13039755	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatccccatgctacctacCaagtcactctgctttatttc	5	14	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13039755	A	A	13039755	1	1	229	0	1	0	0	0	0	0	0	0	5736	609	21	2		2	FARSA	19	13039755	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	576756	13039755	46089228	1797	174941											
CACNA1A	773	broad.mit.edu	37	chr19	13476185	13476185	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccatataaaattctaaccCtatgattgcaaaaataagga	4	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13476185	A	A	13476185	3	1	229	1	0	0	0	0	1	0	0	0	2564	681	24	2	7076	2	CACNA1A	19	13476185	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	436430	13476185	45652798	1798	174942											
CYP4F8	11283	broad.mit.edu	37	chr19	15739435	15739435	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccctgtttctccatccccCgggcctggtcgggggagggg	15	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15739435	A	A	15739435	1	1	229	0	1	0	0	0	0	0	0	0	4224	667	23	1		1	CYP4F8	19	15739435	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	2263250	15739435	43389548	1799	174943											
CYP4F3	4051	broad.mit.edu	37	chr19	15769378	15769378	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accctgaggtgcgggcccccCgtctctgtttttgtccattc	10	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15769378	A	A	15769378	1	1	229	0	1	0	0	0	0	0	0	0	4223	667	23	1		1	CYP4F3	19	15769378	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	29943	15769378	43359605	1800	174944											
FCHO1	23149	broad.mit.edu	37	chr19	17893866	17893866	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagctgaccatgaccttcCctgctggcatcgtgcgtgtg	14	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17893866	A	A	17893866	3	1	229	1	0	0	0	0	1	0	0	0	5844	623	22	2	2060	2	FCHO1	19	17893866	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2124488	17893866	41235117	1801	174945											
ZNF43	7594	broad.mit.edu	37	chr19	22000695	22000695	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcactctcacctacctgggGgtttggctaccatttcatgt	8	12	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	22000695	C	C	22000695	3	2	229	1	0	0	0	0	1	0	0	0	18030	1232	43	4	2213	4	ZNF43	19	22000695	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4106829	22000695	37128288	1802	174946											
ZNF492	57615	broad.mit.edu	37	chr19	22817391	22817391	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctccacaatctgcgcccCaagttcgccttgcccagccc	8	20	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22817391	T	T	22817391	1	4	229	0	1	0	0	0	0	0	0	0	18070	609	21	4		4	ZNF492	19	22817391	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	816696	22817391	36311592	1803	174947											
ZNF492	57615	broad.mit.edu	37	chr19	22836706	22836706	+	Intron	DEL	A	-	-													atatgagcaagattcatgttAtttgtaataaaacaggtatt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	22836706	-	-	22836706	6	5	229	0	1	1	0	1	0	0	0	0	18070	464	16	0		0	ZNF492	19	22836706	Intron	DEL	A	TCGA-91-6836-01A-21D-1855-08	19315	22836706	36292277	1804	174948											
ZNF99	7652	broad.mit.edu	37	chr19	22939010	22939010	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacattcttcacatttttaGggcttctccccagtatgaat	5	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	22939010	T	T	22939010	2	4	229	1	0	0	0	0	0	0	0	1	18333	1014	35	2		2	ZNF99	19	22939010	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	102304	22939010	36189973	1805	174949											
ZNF536	9745	broad.mit.edu	37	chr19	31039467	31039467	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccctggacttgtctgtgCggccagatgccgcctccctc	10	17	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31039467	A	A	31039467	2	1	229	1	0	0	0	0	0	0	0	1	18101	759	27	3		3	ZNF536	19	31039467	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	8100457	31039467	28089516	1806	174950											
ATP4A	495	broad.mit.edu	37	chr19	36049949	36049949	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggttgtcaaaccacagatGggacacagtcatgcggttct	12	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36049949	T	T	36049949	3	4	229	1	0	0	0	0	1	0	0	0	1149	1348	47	2	1966	2	ATP4A	19	36049949	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5010482	36049949	23079034	1807	174951											
ZNF461	92283	broad.mit.edu	37	chr19	37147408	37147408	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cagggctccttcccttgctcCaatgaggagattacggctgg	12	12	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37147408	A	A	37147408	3	1	229	1	0	0	0	0	1	0	0	0	18052	593	21	2	1529	2	ZNF461	19	37147408	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1097459	37147408	21981575	1808	174952											
SIPA1L3	23094	broad.mit.edu	37	chr19	38572538	38572538	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatggcacaaaggccacCaagatggcccattccatgag	10	12	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38572538	A	A	38572538	2	1	229	1	0	0	0	0	0	0	0	1	14444	581	21	2		2	SIPA1L3	19	38572538	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1425130	38572538	20556445	1809	174953											
RYR1	6261	broad.mit.edu	37	chr19	39025938	39025938	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcccagtttctcctcccCtgcctcgccctctgcagaaa	6	19	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39025938	A	A	39025938	1	1	229	0	1	0	0	0	0	0	0	0	13879	696	24	2		2	RYR1	19	39025938	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	453400	39025938	20103045	1810	174954											
PSMC4	5704	broad.mit.edu	37	chr19	40485783	40485783	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatctgggtgagggccccCgcatggtccgggatgtgttc	16	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40485783	A	A	40485783	3	1	229	1	0	0	0	0	1	0	0	0	12795	652	23	1	759	1	PSMC4	19	40485783	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1459845	40485783	18643200	1811	174955											
SPTBN4	57731	broad.mit.edu	37	chr19	41025943	41025943	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccacacctcgaacttgGctggcataaactgctcggct	10	14	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41025943	A	A	41025943	3	1	229	1	0	0	0	0	1	0	0	0	15239	1203	42	4	3597	4	SPTBN4	19	41025943	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	540160	41025943	18103040	1812	174956											
CYP2B6	1555	broad.mit.edu	37	chr19	41522587	41522587	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgaaggcatcgcccgtgCggaattgttcctcttcttca	11	11	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41522587	A	A	41522587	3	1	229	1	0	0	0	0	1	0	0	0	4197	768	27	3	1365	3	CYP2B6	19	41522587	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	496644	41522587	17606396	1813	174957											
AXL	558	broad.mit.edu	37	chr19	41762530	41762530	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatgtggtaggtgcactccCgccaagagtggggaaccatg	15	10	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	41762530	A	A	41762530	1	1	229	0	1	0	0	0	0	0	0	0	1243	667	23	1		1	AXL	19	41762530	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	239943	41762530	17366453	1814	174958											
ARHGEF1	9138	broad.mit.edu	37	chr19	42398702	42398702	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	attctctctcgtttcagttcCagattttcgacacctcaaag	5	12	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42398702	T	T	42398702	3	4	229	1	0	0	0	0	1	0	0	0	895	594	21	4	932	4	ARHGEF1	19	42398702	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	636172	42398702	16730281	1815	174959											
CEACAM1	634	broad.mit.edu	37	chr19	43031142	43031142	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgacaatcccatgtgtGggaagtagaactaacccccc	10	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43031142	T	T	43031142	1	4	229	0	1	0	0	0	0	0	0	0	3217	1363	47	2		2	CEACAM1	19	43031142	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	632440	43031142	16097841	1816	174960											
PSG1	5669	broad.mit.edu	37	chr19	43358275	43358275	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccatatgtaattctttgacCgtctactacatatgatgtaa	5	9	2	2	rs112018210	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43358275	A	A	43358275	1	1	229	0	1	0	0	0	0	0	0	0	12759	667	23	1		1	PSG1	19	43358275	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	327133	43358275	15770708	1817	174961											
PSG4	5672	broad.mit.edu	37	chr19	43709505	43709505	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgatctcctgatccaccCaactcagcctcccaaagtgc	5	18	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	43709505	A	A	43709505	1	1	229	0	1	0	0	0	0	0	0	0	12763	609	21	2		2	PSG4	19	43709505	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	351230	43709505	15419478	1818	174962											
TEX101	83639	broad.mit.edu	37	chr19	43910744	43910744	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	actaacctggtgggggagtcGggcgcgagtttcgagagaga	18	7	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43910744	T	T	43910744	1	4	229	0	1	0	0	0	0	0	0	0	15895	1131	39	1		1	TEX101	19	43910744	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	201239	43910744	15218239	1819	174963											
CEACAM20	125931	broad.mit.edu	37	chr19	45024797	45024797	+	Intron	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtgtttctggaaacacGtggagatacacagtcaggtt	12	7	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	45024797	C	C	45024797	1	2	229	0	1	0	0	0	0	0	0	0	3221	1160	40	4		4	CEACAM20	19	45024797	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1114053	45024797	14104186	1820	174964											
SFRS16	11129	broad.mit.edu	37	chr19	45574080	45574080	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctcaaggtcccgatccCgaagcccccattaccgacat	9	17	1	0	rs150962382		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45574080	A	A	45574080	2	1	229	1	0	0	0	0	0	0	0	1	14285	644	23	1		1	SFRS16	19	45574080	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	549283	45574080	13554903	1821	174965											
VASP	7408	broad.mit.edu	37	chr19	46029422	46029422	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccaggagctgaggaagcGgggttctccctgaccacagg	15	12	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46029422	T	T	46029422	3	4	229	1	0	0	0	0	1	0	0	0	17255	1116	39	1	1180	1	VASP	19	46029422	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	455342	46029422	13099561	1822	174966											
SNRPD2	6633	broad.mit.edu	37	chr19	46195165	46195165	+	5'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatggtcactacgctctcCgttcactcccgtttcctccg	7	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46195165	A	A	46195165	1	1	229	0	1	0	0	0	0	0	0	0	14979	667	23	1		1	SNRPD2	19	46195165	5'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	165743	46195165	12933818	1823	174967											
DMPK	1760	broad.mit.edu	37	chr19	46282585	46282585	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgccggtccccattcacCaacacgtccctctcctcacg	5	22	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46282585	A	A	46282585	3	1	229	1	0	0	0	0	1	0	0	0	4624	593	21	2	1575	2	DMPK	19	46282585	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	87420	46282585	12846398	1824	174968											
IGFL3	388555	broad.mit.edu	37	chr19	46627156	46627156	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttacctggtacagctccGggagatgggagataagtgac	13	9	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46627156	T	T	46627156	2	4	229	1	0	0	0	0	0	0	0	1	7658	1115	39	1		1	IGFL3	19	46627156	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	344571	46627156	12501827	1825	174969											
PNMAL2	57469	broad.mit.edu	37	chr19	46997190	46997190	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcctccgactcctcctcGgactgttcgtccgaagcctc	9	17	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46997190	T	T	46997190	2	4	229	1	0	0	0	0	0	0	0	1	12253	1103	39	1		1	PNMAL2	19	46997190	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	370034	46997190	12131793	1826	174970											
TRPM4	54795	broad.mit.edu	37	chr19	49661459	49661459	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccccagagctggatccCcaagatcttcaagaagaaga	9	12	2	5			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49661459	A	A	49661459	3	1	229	1	0	0	0	0	1	0	0	0	16713	623	22	2	41	2	TRPM4	19	49661459	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2664269	49661459	9467524	1827	174971											
MYH14	79784	broad.mit.edu	37	chr19	50764901	50764901	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggctcgcaggtgggcagCcacgctgtctcccggggtcc	15	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50764901	T	T	50764901	1	4	229	0	1	0	0	0	0	0	0	0	10127	754	26	4		4	MYH14	19	50764901	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1103442	50764901	8364082	1828	174972											
LRRC4B	94030	broad.mit.edu	37	chr19	51021718	51021718	+	Missense_Mutation	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgaagttaagcgtgccgtCatgcaggacggagatgcgca	16	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51021718	T	T	51021718	3	4	229	1	0	0	0	0	1	0	0	0	9094	826	29	4	893	4	LRRC4B	19	51021718	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	256817	51021718	8107265	1829	174973											
SHANK1	50944	broad.mit.edu	37	chr19	51192465	51192465	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcacccttggcccccCggagcacgaacccaaacccc	8	21	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51192465	A	A	51192465	3	1	229	1	0	0	0	0	1	0	0	0	14377	652	23	1	4485	1	SHANK1	19	51192465	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	170747	51192465	7936518	1830	174974											
SHANK1	50944	broad.mit.edu	37	chr19	51207309	51207309	+	Intron	SNP	C	T	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaagtcaggtcccccaactCccccatcccaccatgaaacc	4	21	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51207309	T	T	51207309	1	4	229	0	1	0	0	0	0	0	0	0	14377	870	30	4		4	SHANK1	19	51207309	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	14844	51207309	7921674	1831	174975											
LIM2	3982	broad.mit.edu	37	chr19	51885706	51885706	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatgccagcagagaagggCcgggagatgcgggagaaggt	19	6	0	4			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	51885706	A	A	51885706	2	1	229	1	0	0	0	0	0	0	0	1	8867	726	26	3		3	LIM2	19	51885706	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	678397	51885706	7243277	1832	174976											
SIGLEC12	89858	broad.mit.edu	37	chr19	52004768	52004768	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgtttgtggccactggaaTgttccggcttacatggtccc	12	10	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52004768	A	A	52004768	3	1	229	1	0	0	0	0	1	0	0	0	14421	1464	51	5	1672	5	SIGLEC12	19	52004768	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	119062	52004768	7124215	1833	174977											
SIGLEC5	8778	broad.mit.edu	37	chr19	52130577	52130577	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccacctgctgggcaacttgCtccagggccctgctcagaca	10	17	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52130577	A	A	52130577	1	1	229	0	1	0	0	0	0	0	0	0	14424	812	28	3		3	SIGLEC5	19	52130577	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	125809	52130577	6998406	1834	174978											
HAS1	3036	broad.mit.edu	37	chr19	52216704	52216704	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggacgcggtagcccccGgtccgccgccggcaaagcct	13	18	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52216704	T	T	52216704	2	4	229	1	0	0	0	0	0	0	0	1	7027	1103	39	1		1	HAS1	19	52216704	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	86127	52216704	6912279	1835	174979											
ZNF836	162962	broad.mit.edu	37	chr19	52658909	52658909	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgaggcttgaacgctgaGtataggctttgccacaatca	11	8	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	52658909	T	T	52658909	3	4	229	1	0	0	0	0	1	0	0	0	18316	1029	36	3	785	3	ZNF836	19	52658909	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	442205	52658909	6470074	1836	174980											
ZNF816A	125893	broad.mit.edu	37	chr19	53454623	53454623	+	Missense_Mutation	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcggtctgtactaccagtCaactttttgatttttgtcat	6	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	53454623	G	G	53454623	3	3	229	1	0	0	0	0	1	0	0	0	18306	825	29	4	1554	4	ZNF816A	19	53454623	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	795714	53454623	5674360	1837	174981											
ZNF160	90338	broad.mit.edu	37	chr19	53578432	53578432	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacatccctaaatgtcaacCgtacctaaaatgaaaaacac	3	13	1	1	rs329709	byFrequency;by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53578432	A	A	53578432	3	1	229	1	0	0	0	0	1	0	0	0	17865	652	23	1	2448	1	ZNF160	19	53578432	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	123809	53578432	5550551	1838	174982											
ZNF813	126017	broad.mit.edu	37	chr19	53994510	53994510	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttagtcagacgtcatccCttacatgccatcgtagactt	6	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	53994510	A	A	53994510	3	1	229	1	0	0	0	0	1	0	0	0	18304	681	24	2	1034	2	ZNF813	19	53994510	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	416078	53994510	5134473	1839	174983											
RPS9	6203	broad.mit.edu	37	chr19	54705008	54705008	+	Intron	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgtttggagcccttacgctCacacttctctcccgcgcagg	9	17	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	54705008	T	T	54705008	1	4	229	0	1	0	0	0	0	0	0	0	13773	841	29	4		4	RPS9	19	54705008	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	710498	54705008	4423975	1840	174984											
LILRA6	79168	broad.mit.edu	37	chr19	54742891	54742891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctcaaataacagaatccCgaggaacaccaggaccaagc	8	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54742891	A	A	54742891	3	1	229	1	0	0	0	0	1	0	0	0	8861	652	23	1	65	1	LILRA6	19	54742891	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	37883	54742891	4386092	1841	174985											
LILRA4	23547	broad.mit.edu	37	chr19	54845142	54845142	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccccttgacaggacctgaCcctctgtgcccagccccata	7	19	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	54845142	A	A	54845142	1	1	229	0	1	0	0	0	0	0	0	0	8859	522	18	3		3	LILRA4	19	54845142	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	102251	54845142	4283841	1842	174986											
LILRB4	11006	broad.mit.edu	37	chr19	55177446	55177446	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcagggcaccagccaaaggGactccagataggagaggtca	13	11	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	55177446	T	T	55177446	1	4	229	0	1	0	0	0	0	0	0	0	8865	1189	41	3		3	LILRB4	19	55177446	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	332304	55177446	3951537	1843	174987											
KIR3DL3	115653	broad.mit.edu	37	chr19	55246862	55246862	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagccagagagctcagggcCatgtggggaagcaggatggg	19	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55246862	A	A	55246862	1	1	229	0	1	0	0	0	0	0	0	0	8393	609	21	2		2	KIR3DL3	19	55246862	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	69416	55246862	3882121	1844	174988											
KIR3DL1	3811	broad.mit.edu	37	chr19	55331451	55331451	+	Silent	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctcccagtgatcccctGgacatcgtggtcacaggtga	11	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	55331451	A	A	55331451	2	1	229	1	0	0	0	0	0	0	0	1	8391	1335	47	4		4	KIR3DL1	19	55331451	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	84589	55331451	3797532	1845	174989											
BRSK1	84446	broad.mit.edu	37	chr19	55805575	55805576	+	Intron	DEL	CC	-	-													gaggctcacatcagctctctCcctcaggtccccccattatg							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	55805576	-	-	55805575	6	5	229	0	1	1	0	1	0	0	0	0	1532	870	30	0		0	BRSK1	19	55805575	Intron	DEL	CC	TCGA-91-6836-01A-21D-1855-08	474124	55805575	3323408	1846	174990											
NLRP5	126206	broad.mit.edu	37	chr19	56538872	56538872	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcagaggtcgtgtctcccCgttacctgttagttagagga	12	9	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	56538872	T	T	56538872	3	4	229	1	0	0	0	0	1	0	0	0	10575	652	23	4	1299	4	NLRP5	19	56538872	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	733297	56538872	2590111	1847	174991											
ZNF530	348327	broad.mit.edu	37	chr19	58111530	58111530	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcgtcctcccggcctcctCtgccctccccacccgaaact	6	23	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	58111530	G	G	58111530	1	3	229	0	1	0	0	0	0	0	0	0	18098	928	32	4		4	ZNF530	19	58111530	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1572658	58111530	1017453	1848	174992											
C20orf54	113278	broad.mit.edu	37	chr20	742374	742374	+	Nonsense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccccaccccagtggccctGcaagagggggcaggggctca	14	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	742374	A	A	742374	4	1	229	1	0	0	0	0	0	1	0	0	2136	1328	46	4	249	4	C20orf54	20	742374	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08		742374	62283146	1849	174993											
SIRPB1	10326	broad.mit.edu	37	chr20	1559271	1559271	+	Nonsense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tagcacagcgcagagtggccGactctccagctgcaactgat	11	13	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1559271	T	T	1559271	4	4	229	1	0	0	0	0	0	1	0	0	14446	1059	37	3	1066	3	SIRPB1	20	1559271	Nonsense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	816897	1559271	61466249	1850	174994											
HSPA12B	116835	broad.mit.edu	37	chr20	3728879	3728879	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggctggactagtgtccCgagagaatgcagagcagcta	13	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	3728879	A	A	3728879	2	1	229	1	0	0	0	0	0	0	0	1	7474	644	23	1		1	HSPA12B	20	3728879	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2169608	3728879	59296641	1851	174995											
RASSF2	9770	broad.mit.edu	37	chr20	4768370	4768370	+	Missense_Mutation	SNP	G	C	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggattcgggcaatcagcGggtaatcggtggccttcagc	16	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	4768370	C	C	4768370	3	2	229	1	0	0	0	0	1	0	0	0	13194	1116	39	4	270	4	RASSF2	20	4768370	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1039491	4768370	58257150	1852	174996											
PROKR2	128674	broad.mit.edu	37	chr20	5282851	5282851	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccgtcacgaagcacacGgtgttgatcatgctgttgct	11	10	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5282851	T	T	5282851	2	4	229	1	0	0	0	0	0	0	0	1	12659	1103	39	1		1	PROKR2	20	5282851	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	514481	5282851	57742669	1853	174997											
GPCPD1	56261	broad.mit.edu	37	chr20	5556162	5556162	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcatgtcacaactgtatcCtggtaatggcttaataatta	6	7	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5556162	T	T	5556162	3	4	229	1	0	0	0	0	1	0	0	0	6668	690	24	4	1164	4	GPCPD1	20	5556162	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	273311	5556162	57469358	1854	174998											
MCM8	84515	broad.mit.edu	37	chr20	5935211	5935211	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgaaaaatgtgcatgtAcctgtgtgattatttgtgct	9	6	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	5935211	T	T	5935211	1	4	229	0	1	0	0	0	0	0	0	0	9486	406	14	5		5	MCM8	20	5935211	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	379049	5935211	57090309	1855	174999											
PLCB1	23236	broad.mit.edu	37	chr20	8639185	8639185	+	Silent	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtttttcattgtttttagTggtgcaaaaagcaaaccata	8	5	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8639185	C	C	8639185	2	2	229	1	0	0	0	0	0	0	0	1	12122	1710	59	5		5	PLCB1	20	8639185	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	2703974	8639185	54386335	1856	175000											
PLCB1	23236	broad.mit.edu	37	chr20	8705428	8705428	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctggagaaaaacccctcTtgcagcatataatgattata	6	10	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	8705428	C	C	8705428	1	2	229	0	1	0	0	0	0	0	0	0	12122	1624	56	5		5	PLCB1	20	8705428	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	66243	8705428	54320092	1857	175001											
SEL1L2	80343	broad.mit.edu	37	chr20	13830921	13830921	+	Silent	SNP	C	A	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtatgtgggcatctggactCgtttgagcagccatgtcgta	14	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	13830921	A	A	13830921	2	1	229	1	0	0	0	0	0	0	0	1	14124	871	31	3		3	SEL1L2	20	13830921	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	5125493	13830921	49194599	1858	175002											
FLRT3	23767	broad.mit.edu	37	chr20	14307564	14307564	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgttttagactagtgagacCttgaagagatggtgatgaaa	13	4	0	6			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	14307564	A	A	14307564	3	1	229	1	0	0	0	0	1	0	0	0	5998	681	24	2	1364	2	FLRT3	20	14307564	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	476643	14307564	48717956	1859	175003											
MACROD2	140733	broad.mit.edu	37	chr20	15918146	15918146	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaacactgtcactgtgccCggccctgcttcagaagaggc	11	14	3	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	15918146	A	A	15918146	2	1	229	1	0	0	0	0	0	0	0	1	9234	639	23	1		1	MACROD2	20	15918146	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1610582	15918146	47107374	1860	175004											
CSRP2BP	57325	broad.mit.edu	37	chr20	18142791	18142791	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctctggatttctctgcccCtggtacacctgcctctcatt	6	15	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18142791	A	A	18142791	3	1	229	1	0	0	0	0	1	0	0	0	4002	681	24	2	1028	2	CSRP2BP	20	18142791	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2224645	18142791	44882729	1861	175005											
C20orf12	55184	broad.mit.edu	37	chr20	18374908	18374908	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aataactcaccccagctggaCctgctgccgcacagcccccc	7	20	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18374908	A	A	18374908	3	1	229	1	0	0	0	0	1	0	0	0	2107	506	18	3	584	3	C20orf12	20	18374908	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	232117	18374908	44650612	1862	175006											
NKX2-2	4821	broad.mit.edu	37	chr20	21492614	21492614	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgctgtcgggtactgggGggtgctggccgagctgtact	19	8	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	21492614	T	T	21492614	3	4	229	1	0	0	0	0	1	0	0	0	10545	1232	43	2	56	2	NKX2-2	20	21492614	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3117706	21492614	41532906	1863	175007											
PAX1	5075	broad.mit.edu	37	chr20	21695407	21695407	+	Missense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	accacacttcctttattggtCtgggtttttaggcttctctg	8	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	21695407	A	A	21695407	3	1	229	1	0	0	0	0	1	0	0	0	11572	913	32	3	1589	3	PAX1	20	21695407	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	202793	21695407	41330113	1864	175008											
CST1	1469	broad.mit.edu	37	chr20	23731242	23731242	+	Intron	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggaacaaaccaggctggGacccaggacccctggggtgg	17	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	23731242	T	T	23731242	1	4	229	0	1	0	0	0	0	0	0	0	4004	1189	41	3		3	CST1	20	23731242	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2035835	23731242	39294278	1865	175009											
DEFB119	245932	broad.mit.edu	37	chr20	29977020	29977020	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacaaccggcagtgtccatcCatccaacactctactttggg	7	14	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	29977020	A	A	29977020	1	1	229	0	1	0	0	0	0	0	0	0	4446	594	21	2		2	DEFB119	20	29977020	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	6245778	29977020	33048500	1866	175010											
ASXL1	171023	broad.mit.edu	37	chr20	31021250	31021250	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgctctcggccagatctcCgaaccagagccagaaggaat	10	13	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31021250	A	A	31021250	2	1	229	1	0	0	0	0	0	0	0	1	1070	644	23	1		1	ASXL1	20	31021250	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1044230	31021250	32004270	1867	175011											
SUN5	140732	broad.mit.edu	37	chr20	31583502	31583502	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggaggtcctggatttcccCactgtgatgtcgcaccttct	10	13	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31583502	A	A	31583502	3	1	229	1	0	0	0	0	1	0	0	0	15512	594	21	2	706	2	SUN5	20	31583502	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	562252	31583502	31442018	1868	175012											
C20orf186	149954	broad.mit.edu	37	chr20	31672738	31672738	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctccctcgggtgtccgtgCggctcctgcccggcgtgggt	15	17	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	31672738	A	A	31672738	2	1	229	1	0	0	0	0	0	0	0	1	2120	759	27	3		3	C20orf186	20	31672738	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	89236	31672738	31352782	1869	175013											
NECAB3	63941	broad.mit.edu	37	chr20	32246519	32246519	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatcccacctgccagctgGggactcactgcagacaatgg	11	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32246519	A	A	32246519	1	1	229	0	1	0	0	0	0	0	0	0	10401	1247	43	4		4	NECAB3	20	32246519	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	573781	32246519	30779001	1870	175014											
NCOA6	23054	broad.mit.edu	37	chr20	33338275	33338275	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatcatatttggcggccCgtgggacacctgcatctggt	12	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33338275	A	A	33338275	3	1	229	1	0	0	0	0	1	0	0	0	10328	652	23	1	4496	1	NCOA6	20	33338275	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1091756	33338275	29687245	1871	175015											
MYH7B	57644	broad.mit.edu	37	chr20	33565716	33565716	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgccctagttcagctccCttgtcactgccatcttccag	7	16	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	33565716	A	A	33565716	1	1	229	0	1	0	0	0	0	0	0	0	10134	696	24	2		2	MYH7B	20	33565716	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	227441	33565716	29459804	1872	175016											
MYH7B	57644	broad.mit.edu	37	chr20	33575777	33575777	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaggacatgggcctgtGggggggcagaagccctggcc	20	9	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	33575777	T	T	33575777	1	4	229	0	1	0	0	0	0	0	0	0	10134	1363	47	2		2	MYH7B	20	33575777	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	10061	33575777	29449743	1873	175017											
KIAA1755	85449	broad.mit.edu	37	chr20	36852001	36852001	+	Missense_Mutation	SNP	G	T	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaagcttgtagcagggaaGaggcctggtggaggtcagca	18	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36852001	T	T	36852001	3	4	229	1	0	0	0	0	1	0	0	0	8327	942	33	3	1419	3	KIAA1755	20	36852001	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	3276224	36852001	26173519	1874	175018											
KIAA1755	85449	broad.mit.edu	37	chr20	36869264	36869264	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagctggggacaggcgGggagaggaggcttgtcttgg	22	5	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36869264	T	T	36869264	2	4	229	1	0	0	0	0	0	0	0	1	8327	1219	43	2		2	KIAA1755	20	36869264	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	17263	36869264	26156256	1875	175019											
LBP	3929	broad.mit.edu	37	chr20	36993453	36993453	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatgaacacataacctacCgctccttccttctttccttt	2	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	36993453	A	A	36993453	1	1	229	0	1	0	0	0	0	0	0	0	8723	667	23	1		1	LBP	20	36993453	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	124189	36993453	26032067	1876	175020											
LBP	3929	broad.mit.edu	37	chr20	36995374	36995374	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagaccttcagctccagcGggagcaccctaaaacttctt	7	13	2	1	rs73287213	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	36995374	T	T	36995374	1	4	229	0	1	0	0	0	0	0	0	0	8723	1131	39	1		1	LBP	20	36995374	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1921	36995374	26030146	1877	175021											
FAM83D	81610	broad.mit.edu	37	chr20	37581170	37581170	+	3'UTR	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctatcagtaactgctcCgtgttcagactcctggtttc	7	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37581170	A	A	37581170	1	1	229	0	1	0	0	0	0	0	0	0	5689	667	23	1		1	FAM83D	20	37581170	3'UTR	SNP	C	TCGA-91-6836-01A-21D-1855-08	585796	37581170	25444350	1878	175022											
CHD6	84181	broad.mit.edu	37	chr20	40033674	40033674	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctactcggcttgtcttcCgcagtcttttcagtcactgc	9	13	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40033674	A	A	40033674	2	1	229	1	0	0	0	0	0	0	0	1	3360	639	23	1		1	CHD6	20	40033674	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	2452504	40033674	22991846	1879	175023											
CHD6	84181	broad.mit.edu	37	chr20	40049532	40049532	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgccacctctaagcttcCtttcttggtttcatcttgga	7	11	4	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40049532	A	A	40049532	4	1	229	1	0	0	0	0	0	1	0	0	3360	690	24	2	2432	2	CHD6	20	40049532	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	15858	40049532	22975988	1880	175024											
CHD6	84181	broad.mit.edu	37	chr20	40161794	40161794	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttccgtgccttctttgccCcatctttttgcttcggctcc	7	16	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40161794	A	A	40161794	3	1	229	1	0	0	0	0	1	0	0	0	3360	623	22	2	7838	2	CHD6	20	40161794	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	112262	40161794	22863726	1881	175025											
PTPRT	11122	broad.mit.edu	37	chr20	40735634	40735634	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggaggcccctagcattcAgccctatccccaagggtcct	11	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40735634	T	T	40735634	1	4	229	0	1	0	0	0	0	0	0	0	12920	203	7	5		5	PTPRT	20	40735634	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	573840	40735634	22289886	1882	175026											
PTPRT	11122	broad.mit.edu	37	chr20	40827860	40827860	+	Intron	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccacggatgtccccttccCctttgttggctctacttact	7	15	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40827860	T	T	40827860	1	4	229	0	1	0	0	0	0	0	0	0	12920	638	22	4		4	PTPRT	20	40827860	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	92226	40827860	22197660	1883	175027											
PTPRT	11122	broad.mit.edu	37	chr20	40911124	40911124	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagacaagcagatgccaaCataccttttgtagccagacg	9	11	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40911124	A	A	40911124	1	1	229	0	1	0	0	0	0	0	0	0	12920	493	17	3		3	PTPRT	20	40911124	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	83264	40911124	22114396	1884	175028											
IFT52	51098	broad.mit.edu	37	chr20	42252616	42252616	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagtgatgagatcccaaGggactttaccaccctcttcg	11	11	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	42252616	T	T	42252616	3	4	229	1	0	0	0	0	1	0	0	0	7631	1000	35	2	888	2	IFT52	20	42252616	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1341492	42252616	20772904	1885	175029											
PABPC1L	80336	broad.mit.edu	37	chr20	43545524	43545524	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaaagtgtgagtggctgGgcccgagggaggggcggagg	22	8	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43545524	T	T	43545524	1	4	229	0	1	0	0	0	0	0	0	0	11458	1247	43	2		2	PABPC1L	20	43545524	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1292908	43545524	19479996	1886	175030											
SLC35C2	51006	broad.mit.edu	37	chr20	44979443	44979443	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaacgtggagggatattccCgagaggcagagggcgaagcc	17	9	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	44979443	A	A	44979443	2	1	229	1	0	0	0	0	0	0	0	1	14694	639	23	1		1	SLC35C2	20	44979443	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1433919	44979443	18046077	1887	175031											
ZMYND8	23613	broad.mit.edu	37	chr20	45891056	45891056	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaagattcaggatgctgcCggtggtggaggttttgtccg	16	6	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45891056	A	A	45891056	3	1	229	1	0	0	0	0	1	0	0	0	17837	652	23	1	2017	1	ZMYND8	20	45891056	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	911613	45891056	17134464	1888	175032											
NCOA3	8202	broad.mit.edu	37	chr20	46262884	46262884	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agacaaaaagcaaactcttcCgaaatcctgtaacaaatgat	5	9	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	46262884	A	A	46262884	2	1	229	1	0	0	0	0	0	0	0	1	10325	644	23	1		1	NCOA3	20	46262884	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	371828	46262884	16762636	1889	175033											
SULF2	55959	broad.mit.edu	37	chr20	46331250	46331250	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	agccactcccaggctggaaaGgttgcagcttaccttggagt	12	11	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	46331250	T	T	46331250	1	4	229	0	1	0	0	0	0	0	0	0	15489	1015	35	2		2	SULF2	20	46331250	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	68366	46331250	16694270	1890	175034											
ARFGEF2	10564	broad.mit.edu	37	chr20	47570224	47570224	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagcaaaccaacaactccCgaaaaaacagatttaaccaa	3	12	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	47570224	A	A	47570224	2	1	229	1	0	0	0	0	0	0	0	1	855	639	23	1		1	ARFGEF2	20	47570224	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	1238974	47570224	15455296	1891	175035											
KCNB1	3745	broad.mit.edu	37	chr20	47989688	47989688	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaagaacttaggggaggtGggtaaaggggagctttcaaa	15	4	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	47989688	T	T	47989688	2	4	229	1	0	0	0	0	0	0	0	1	8082	1335	47	2		2	KCNB1	20	47989688	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	419464	47989688	15035832	1892	175036											
ZFP64	55734	broad.mit.edu	37	chr20	50713782	50713782	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctccttctcccaagcccAccccactagactgagtttca	5	17	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	50713782	G	G	50713782	1	3	229	0	1	0	0	0	0	0	0	0	17778	174	6	5		5	ZFP64	20	50713782	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	2724094	50713782	12311738	1893	175037											
BCAS1	8537	broad.mit.edu	37	chr20	52645048	52645048	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcaccttttcctgtccCttgtccagcttgaagaattt	7	13	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	52645048	A	A	52645048	3	1	229	1	0	0	0	0	1	0	0	0	1355	680	24	2	1184	2	BCAS1	20	52645048	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1931266	52645048	10380472	1894	175038											
APCDD1L	164284	broad.mit.edu	37	chr20	57036509	57036509	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgagctgacccaccagccGcccaggtgcaggggcagggc	15	17	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57036509	T	T	57036509	2	4	229	1	0	0	0	0	0	0	0	1	768	1074	38	3		3	APCDD1L	20	57036509	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	4391461	57036509	5989011	1895	175039											
ZNF831	128611	broad.mit.edu	37	chr20	57768084	57768084	+	Silent	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagggagctcaggcacAgtccccacccaagacaggag	13	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	57768084	T	T	57768084	2	4	229	1	0	0	0	0	0	0	0	1	18314	175	7	5		5	ZNF831	20	57768084	Silent	SNP	A	TCGA-91-6836-01A-21D-1855-08	731575	57768084	5257436	1896	175040											
C20orf151	140893	broad.mit.edu	37	chr20	60990804	60990804	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggatccctggtcctgcGggggcccagcctcccagcct	15	16	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	60990804	T	T	60990804	1	4	229	0	1	0	0	0	0	0	0	0	2113	1131	39	1		1	C20orf151	20	60990804	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	3222720	60990804	2034716	1897	175041											
NTSR1	4923	broad.mit.edu	37	chr20	61389565	61389565	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgggtctctgagcccacGcctctgtgcctcaggtgcag	13	14	3	1	rs79490068	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61389565	A	A	61389565	1	1	229	0	1	0	0	0	0	0	0	0	10805	1102	38	4		4	NTSR1	20	61389565	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	398761	61389565	1635955	1898	175042											
BIRC7	79444	broad.mit.edu	37	chr20	61871001	61871001	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcagccagccctcctgcGgagggggccctgagccggct	16	17	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	61871001	A	A	61871001	1	1	229	0	1	0	0	0	0	0	0	0	1445	1131	39	4		4	BIRC7	20	61871001	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	481436	61871001	1154519	1899	175043											
EEF1A2	1917	broad.mit.edu	37	chr20	62128792	62128792	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccccaccaagctcccccTaagagagaggctgccccacc	7	21	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62128792	A	A	62128792	1	1	229	0	1	0	0	0	0	0	0	0	4964	1537	53	5		5	EEF1A2	20	62128792	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	257791	62128792	896728	1900	175044											
RTEL1	51750	broad.mit.edu	37	chr20	62294336	62294336	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	acagcctggttgtgcttgccCggtggggcggccagtgcggc	18	12	0	0	rs149408979	by1000genomes	TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	62294336	A	A	62294336	1	1	229	0	1	0	0	0	0	0	0	0	13831	667	23	1		1	RTEL1	20	62294336	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	165544	62294336	731184	1901	175045											
TPTE	7179	broad.mit.edu	37	chr21	10942744	10942744	+	Frame_Shift_Del	DEL	C	-	-													gaggtctaggtcaaatccatCccttgtgtatcgccttttgt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	10942744	-	-	10942744	7	5	229	1	0	1	0	1	0	0	0	0	16554	855	30	0	1006	0	TPTE	21	10942744	Frame_Shift_Del	DEL	C	TCGA-91-6836-01A-21D-1855-08		10942744	37187151	1902	175046											
BAGE2	85319	broad.mit.edu	37	chr21	11029702	11029702	+	3'UTR	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgggctcactgtattatGggtactccaagcctcctaag	12	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11029702	A	A	11029702	1	1	229	0	1	0	0	0	0	0	0	0	1297	1363	47	4		4	BAGE2	21	11029702	3'UTR	SNP	G	TCGA-91-6836-01A-21D-1855-08	86958	11029702	37100193	1903	175047											
BAGE2	85319	broad.mit.edu	37	chr21	11058389	11058389	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatattcaaatataagctGggaaggtataaaaaactctg	9	4	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	11058389	A	A	11058389	1	1	229	0	1	0	0	0	0	0	0	0	1297	1363	47	4		4	BAGE2	21	11058389	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	28687	11058389	37071506	1904	175048											
NCAM2	4685	broad.mit.edu	37	chr21	22849572	22849572	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaaggtgtcactttagtGtatggatatttacaaactgc	8	5	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	22849572	A	A	22849572	1	1	229	0	1	0	0	0	0	0	0	0	10298	1392	48	4		4	NCAM2	21	22849572	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	11791183	22849572	25280323	1905	175049											
BACH1	571	broad.mit.edu	37	chr21	30724120	30724120	+	RNA	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatgagaagtagagcacatAgctgctaagataaggtagga	13	4	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	30724120	T	T	30724120	1	4	229	0	1	0	0	0	0	0	0	0	1288	435	15	5		5	BACH1	21	30724120	RNA	SNP	A	TCGA-91-6836-01A-21D-1855-08	7874548	30724120	17405775	1906	175050											
TIAM1	7074	broad.mit.edu	37	chr21	32499417	32499417	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaccctctccggcctccCttcagactcggattttacat	6	15	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32499417	T	T	32499417	3	4	229	1	0	0	0	0	1	0	0	0	16013	681	24	4	688	4	TIAM1	21	32499417	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1775297	32499417	15630478	1907	175051											
TIAM1	7074	broad.mit.edu	37	chr21	32513873	32513873	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaacgcccacgtgactccCttcccacaatttccctccct	5	19	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32513873	A	A	32513873	1	1	229	0	1	0	0	0	0	0	0	0	16013	696	24	2		2	TIAM1	21	32513873	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	14456	32513873	15616022	1908	175052											
TIAM1	7074	broad.mit.edu	37	chr21	32595825	32595825	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttggggtttggcagctccCcaccctgaaggctggctaaa	12	11	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32595825	A	A	32595825	3	1	229	1	0	0	0	0	1	0	0	0	16013	623	22	2	2967	2	TIAM1	21	32595825	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	81952	32595825	15534070	1909	175053											
GCFC1	94104	broad.mit.edu	37	chr21	34136649	34136649	+	Intron	DEL	G	-	-													tagttctgagaaatacttttGagtacacacctggacgaaga							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	34136649	-	-	34136649	6	5	229	0	1	1	0	1	0	0	0	0	6351	1305	45	0		0	GCFC1	21	34136649	Intron	DEL	G	TCGA-91-6836-01A-21D-1855-08	1540824	34136649	13993246	1910	175054											
ITSN1	6453	broad.mit.edu	37	chr21	35154269	35154269	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	cactgcaaattaaagtttttCttatctttgcgacgtttttc	5	8	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	35154269	G	G	35154269	1	3	229	0	1	0	0	0	0	0	0	0	7996	928	32	4		4	ITSN1	21	35154269	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1017620	35154269	12975626	1911	175055											
SLC5A3	6526	broad.mit.edu	37	chr21	35467932	35467932	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcggtggatctgtattcGggtgccctttttatccagga	11	10	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	35467932	T	T	35467932	2	4	229	1	0	0	0	0	0	0	0	1	14780	1103	39	1		1	SLC5A3	21	35467932	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	313663	35467932	12661963	1912	175056											
DOPEY2	9980	broad.mit.edu	37	chr21	37623512	37623512	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttgacggcccatcttgGggttcagttgacagcggctg	13	13	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	37623512	T	T	37623512	3	4	229	1	0	0	0	0	1	0	0	0	4748	1232	43	2	5133	2	DOPEY2	21	37623512	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2155580	37623512	10506383	1913	175057											
LCA5L	150082	broad.mit.edu	37	chr21	40777865	40777865	+	Silent	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggcttaatagaatttacCacagttactttagagtctcc	7	8	1	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	40777865	T	T	40777865	2	4	229	1	0	0	0	0	0	0	0	1	8729	581	21	4		4	LCA5L	21	40777865	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3154353	40777865	7352030	1914	175058											
SH3BGR	6450	broad.mit.edu	37	chr21	40834518	40834518	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctattaaaaatcctgctGtgtgtgtgtttattagaaat	7	5	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	40834518	A	A	40834518	1	1	229	0	1	0	0	0	0	0	0	0	14353	1392	48	4		4	SH3BGR	21	40834518	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	56653	40834518	7295377	1915	175059											
RRP1B	23076	broad.mit.edu	37	chr21	45107884	45107884	+	Silent	SNP	T	G	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtccacgccggcctggccTccattgcagcaggaaggccc	12	17	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	45107884	G	G	45107884	2	3	229	1	0	0	0	0	0	0	0	1	13799	1538	54	5		5	RRP1B	21	45107884	Silent	SNP	T	TCGA-91-6836-01A-21D-1855-08	4273366	45107884	3022011	1916	175060											
DNMT3L	29947	broad.mit.edu	37	chr21	45674639	45674639	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgagcgtggattgtgccCctacagggactcgaaaaggc	16	9	0	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45674639	A	A	45674639	1	1	229	0	1	0	0	0	0	0	0	0	4718	638	22	2		2	DNMT3L	21	45674639	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	566755	45674639	2455256	1917	175061											
KRTAP10-4	386672	broad.mit.edu	37	chr21	45994249	45994249	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcatcagctcctgcaCgccctcgtgctgccagcagt	11	16	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	45994249	T	T	45994249	3	4	229	1	0	0	0	0	1	0	0	0	8582	536	19	4	616	4	KRTAP10-4	21	45994249	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	319610	45994249	2135646	1918	175062											
POTEH	23784	broad.mit.edu	37	chr22	16287387	16287387	+	Frame_Shift_Del	DEL	C	-	-													acggacgtggtacctcggctCcatgaaagcgctgtcgtcgt							TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	-	16287387	-	-	16287387	7	5	229	1	0	1	0	1	0	0	0	0	12363	864	30	0	1178	0	POTEH	22	16287387	Frame_Shift_Del	DEL	C	TCGA-91-6836-01A-21D-1855-08		16287387	35017179	1919	175063											
GAB4	128954	broad.mit.edu	37	chr22	17445735	17445735	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agatggggtgttgggaggagCtggagtcaaaggtgtggctg	21	3	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	17445735	A	A	17445735	3	1	229	1	0	0	0	0	1	0	0	0	6211	797	28	3	339	3	GAB4	22	17445735	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1158348	17445735	33858831	1920	175064											
ZDHHC8	29801	broad.mit.edu	37	chr22	20128602	20128602	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaacaggcaggttggtGggggcctagaagaggtggat	21	4	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20128602	T	T	20128602	1	4	229	0	1	0	0	0	0	0	0	0	17747	1363	47	2		2	ZDHHC8	22	20128602	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2682867	20128602	31175964	1921	175065											
ADRBK2	157	broad.mit.edu	37	chr22	26107113	26107113	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggctcatttgatgaagagGataccaaagggattaaggta	12	4	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26107113	T	T	26107113	3	4	229	1	0	0	0	0	1	0	0	0	344	1174	41	3	1540	3	ADRBK2	22	26107113	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	5978511	26107113	25197453	1922	175066											
MYO18B	84700	broad.mit.edu	37	chr22	26168508	26168508	+	Intron	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	accattgtgggcagggctgaGgggctgagggcaggggggcc	22	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26168508	A	A	26168508	1	1	229	0	1	0	0	0	0	0	0	0	10160	1015	35	4		4	MYO18B	22	26168508	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	61395	26168508	25136058	1923	175067											
HPS4	89781	broad.mit.edu	37	chr22	26875203	26875203	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggcactgggatcctcaCtgaacaataaaatgctgtgt	11	8	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	26875203	A	A	26875203	1	1	229	0	1	0	0	0	0	0	0	0	7408	580	20	3		3	HPS4	22	26875203	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	706695	26875203	24429363	1924	175068											
SMTN	6525	broad.mit.edu	37	chr22	31487001	31487001	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgggctggctctgtgcGggatcgtgtccacaagttca	14	12	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	31487001	T	T	31487001	3	4	229	1	0	0	0	0	1	0	0	0	14928	1116	39	1	1026	1	SMTN	22	31487001	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	4611798	31487001	19817565	1925	175069											
DEPDC5	9681	broad.mit.edu	37	chr22	32287165	32287165	+	Intron	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	agctccttctttaaactgtcAagtactagggctctgccttt	7	11	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	32287165	G	G	32287165	1	3	229	0	1	0	0	0	0	0	0	0	4482	145	5	5		5	DEPDC5	22	32287165	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	800164	32287165	19017401	1926	175070											
SLC5A1	6523	broad.mit.edu	37	chr22	32445951	32445951	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgttttccaccaatcgtGggactgttggaggcttcttc	10	10	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	32445951	T	T	32445951	3	4	229	1	0	0	0	0	1	0	0	0	14775	1348	47	2	163	2	SLC5A1	22	32445951	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	158786	32445951	18858615	1927	175071											
ELFN2	114794	broad.mit.edu	37	chr22	37770245	37770245	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggcatccacatcagcccCgtagcgcatctccaggatgg	11	16	2	0	rs142330872		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37770245	A	A	37770245	3	1	229	1	0	0	0	0	1	0	0	0	5100	652	23	1	1136	1	ELFN2	22	37770245	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	5324294	37770245	13534321	1928	175072											
TRIOBP	11078	broad.mit.edu	37	chr22	38167693	38167693	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaaacgaactccagtacCtaaagaaggaggtgcagtgc	11	8	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	38167693	A	A	38167693	3	1	229	1	0	0	0	0	1	0	0	0	16678	680	24	2	7266	2	TRIOBP	22	38167693	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	397448	38167693	13136873	1929	175073											
CSNK1E	1454	broad.mit.edu	37	chr22	38694856	38694856	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccggtggaagaggttgcGgaagagctgacgtaggtaag	18	6	0	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	38694856	T	T	38694856	3	4	229	1	0	0	0	0	1	0	0	0	3987	1116	39	1	446	1	CSNK1E	22	38694856	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	527163	38694856	12609710	1930	175074											
GTPBP1	9567	broad.mit.edu	37	chr22	39121977	39121977	+	Intron	SNP	C	G	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggtctcctgagtgcctctCtccttttttccttcctcttc	5	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	39121977	G	G	39121977	1	3	229	0	1	0	0	0	0	0	0	0	6943	928	32	4		4	GTPBP1	22	39121977	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	427121	39121977	12182589	1931	175075											
NPTXR	23467	broad.mit.edu	37	chr22	39224385	39224385	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggctgagggccacacGctccttctccagtgccagca	12	15	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39224385	A	A	39224385	3	1	229	1	0	0	0	0	1	0	0	0	10699	1087	38	4	761	4	NPTXR	22	39224385	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	102408	39224385	12080181	1932	175076											
APOBEC3H	164668	broad.mit.edu	37	chr22	39498048	39498048	+	Splice_Site	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	gacggcttgagaggataaagGtgaggcactgtcctgcctgc	15	9	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	39498048	A	A	39498048	5	1	229	1	0	0	0	0	0	0	1	0	797	1275	44	4	554	4	APOBEC3H	22	39498048	Splice_Site	SNP	G	TCGA-91-6836-01A-21D-1855-08	273663	39498048	11806518	1933	175077											
TCF20	6942	broad.mit.edu	37	chr22	42606569	42606569	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttctctccctcctttgCctctgtttttttggctttgg	6	13	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	42606569	A	A	42606569	3	1	229	1	0	0	0	0	1	0	0	0	15812	738	26	3	1177	3	TCF20	22	42606569	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	3108521	42606569	8697997	1934	175078											
MCAT	27349	broad.mit.edu	37	chr22	43529315	43529315	+	Missense_Mutation	SNP	C	T	T	0	1	0	0	0	0	0	0	0	0	0	0	gggatgcctgtatctatgcgCgtggacgttggagtagacag	16	7	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	43529315	T	T	43529315	3	4	229	1	0	0	0	0	1	0	0	0	9465	768	27	4	269	4	MCAT	22	43529315	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	922746	43529315	7775251	1935	175079											
SAMM50	25813	broad.mit.edu	37	chr22	44384991	44384991	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcacccctcctttgcttagGagactacctaggtggagaag	11	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	44384991	T	T	44384991	3	4	229	1	0	0	0	0	1	0	0	0	13940	1188	41	3	1126	3	SAMM50	22	44384991	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	855676	44384991	6919575	1936	175080											
FBLN1	2192	broad.mit.edu	37	chr22	45929620	45929620	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcttgctggtcacccccgCactgcctcggtctctcctag	9	17	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	45929620	A	A	45929620	1	1	229	0	1	0	0	0	0	0	0	0	5755	725	25	3		3	FBLN1	22	45929620	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1544629	45929620	5374946	1937	175081											
SHANK3	85358	broad.mit.edu	37	chr22	51123021	51123021	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttccctcaggtggccatCatcgcagggaactttgagct	10	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	51123021	T	T	51123021	2	4	229	1	0	0	0	0	0	0	0	1	14379	816	29	4		4	SHANK3	22	51123021	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	5193401	51123021	181545	1938	175082											
SFRS17A	8227	broad.mit.edu	37	chrX	1719771	1719771	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	acacacacgacgagctgggcGtggcacacgccgacctgctg	13	15	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	1719771	T	T	1719771	3	4	229	1	0	0	0	0	1	0	0	0	14286	1145	40	3	1386	3	SFRS17A	23	1719771	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08		1719771	153550789	1939	175083											
MXRA5	25878	broad.mit.edu	37	chrX	3243045	3243045	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	aataagcaaatagacaatagGgtaaggagccaaagaatggc	11	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	3243045	T	T	3243045	1	4	229	0	1	0	0	0	0	0	0	0	10097	1247	43	2		2	MXRA5	23	3243045	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	1523274	3243045	152027515	1940	175084											
MXRA5	25878	broad.mit.edu	37	chrX	3261706	3261706	+	Missense_Mutation	SNP	C	G	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccaaattgattctttccaCgtgtttagcaatgccagcgg	8	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	3261706	G	G	3261706	3	3	229	1	0	0	0	0	1	0	0	0	10097	536	19	4	8341	4	MXRA5	23	3261706	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	18661	3261706	152008854	1941	175085											
TLR8	51311	broad.mit.edu	37	chrX	12938644	12938644	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcctcaacagtattttcttCattgggccaaaccaatttga	6	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	12938644	T	T	12938644	2	4	229	1	0	0	0	0	0	0	0	1	16080	825	29	4		4	TLR8	23	12938644	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	9676938	12938644	142331916	1942	175086											
SCML2	10389	broad.mit.edu	37	chrX	18265023	18265023	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	tactaaaaggttaaaaatctCatccctagcaatagttcact	4	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	18265023	A	A	18265023	1	1	229	0	1	0	0	0	0	0	0	0	14023	841	29	3		3	SCML2	23	18265023	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	5326379	18265023	137005537	1943	175087											
SCML2	10389	broad.mit.edu	37	chrX	18265045	18265045	+	Intron	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctagcaatagttcacttAacttgtgctatactgaacca	5	11	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	18265045	C	C	18265045	1	2	229	0	1	0	0	0	0	0	0	0	14023	377	13	5		5	SCML2	23	18265045	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	22	18265045	137005515	1944	175088											
SCML2	10389	broad.mit.edu	37	chrX	18338344	18338344	+	Intron	SNP	A	T	T	0	0	0	0	0	0	0	0	0	0	0	0	actaatacacttgccaatccAgtaattttaaaagtatgttt	4	7	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	18338344	T	T	18338344	1	4	229	0	1	0	0	0	0	0	0	0	14023	203	7	5		5	SCML2	23	18338344	Intron	SNP	A	TCGA-91-6836-01A-21D-1855-08	73299	18338344	136932216	1945	175089											
SH3KBP1	30011	broad.mit.edu	37	chrX	19705766	19705766	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggccctccgtctttccCggtgcagctcggtacagaat	11	14	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	19705766	A	A	19705766	1	1	229	0	1	0	0	0	0	0	0	0	14368	667	23	1		1	SH3KBP1	23	19705766	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	1367422	19705766	135564794	1946	175090											
MAP7D2	256714	broad.mit.edu	37	chrX	20070999	20070999	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tctacatgttcacttgcctcGgtctggggaataggatattg	11	8	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	20070999	T	T	20070999	2	4	229	1	0	0	0	0	0	0	0	1	9360	1124	39	1		1	MAP7D2	23	20070999	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	365233	20070999	135199561	1947	175091											
MAGEB6	158809	broad.mit.edu	37	chrX	26212818	26212818	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	gataatgcgctgccgaagtcGggtctcctgatgtcgctcct	12	12	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	26212818	T	T	26212818	2	4	229	1	0	0	0	0	0	0	0	1	9271	1103	39	1		1	MAGEB6	23	26212818	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	6141819	26212818	129057742	1948	175092											
DMD	1756	broad.mit.edu	37	chrX	32472826	32472826	+	Nonsense_Mutation	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatctggagttttatattCaaaatctctctcaagatact	4	8	5	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	32472826	A	A	32472826	4	1	229	1	0	0	0	0	0	1	0	0	4620	835	29	3	7960	3	DMD	23	32472826	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6260008	32472826	122797734	1949	175093											
FAM47C	442444	broad.mit.edu	37	chrX	37027524	37027524	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctccacccagagcctccCgagactggagtgtcccatct	9	16	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	37027524	A	A	37027524	2	1	229	1	0	0	0	0	0	0	0	1	5622	639	23	1		1	FAM47C	23	37027524	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	4554698	37027524	118243036	1950	175094											
UBA1	7317	broad.mit.edu	37	chrX	47071826	47071826	+	Missense_Mutation	SNP	A	G	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctttcttcatgcagatgAcagtcgtctagaggagctca	9	11	4	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	G	47071826	G	G	47071826	3	3	229	1	0	0	0	0	1	0	0	0	16953	275	10	5	2546	5	UBA1	23	47071826	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	10044302	47071826	108198734	1951	175095											
SSX5	6758	broad.mit.edu	37	chrX	48054775	48054775	+	Missense_Mutation	SNP	A	C	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccctaggtctccgtacaAaggcatcgtctccgttcatg	8	14	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	48054775	C	C	48054775	3	2	229	1	0	0	0	0	1	0	0	0	15326	14	1	5	697	5	SSX5	23	48054775	Missense_Mutation	SNP	A	TCGA-91-6836-01A-21D-1855-08	982949	48054775	107215785	1952	175096											
PRICKLE3	4007	broad.mit.edu	37	chrX	49034315	49034315	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagctgtccatccatccctCtgtccagtcccacagcattc	5	19	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49034315	A	A	49034315	1	1	229	0	1	0	0	0	0	0	0	0	12594	928	32	3		3	PRICKLE3	23	49034315	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	979540	49034315	106236245	1953	175097											
PPP1R3F	89801	broad.mit.edu	37	chrX	49137967	49137967	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	aagttttagcttgtatttacCatgtctttcttcctactgtt	5	8	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	49137967	A	A	49137967	1	1	229	0	1	0	0	0	0	0	0	0	12476	609	21	2		2	PPP1R3F	23	49137967	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	103652	49137967	106132593	1954	175098											
CCNB3	85417	broad.mit.edu	37	chrX	50051710	50051710	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcattatctttaaaaaagTgctcaaatcatgaggaggtg	9	5	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	50051710	A	A	50051710	3	1	229	1	0	0	0	0	1	0	0	0	2944	1696	59	5	555	5	CCNB3	23	50051710	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	913743	50051710	105218850	1955	175099											
SHROOM4	57477	broad.mit.edu	37	chrX	50378411	50378411	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggccttagttggccctGggccttgcatgatgcagtct	15	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	50378411	T	T	50378411	3	4	229	1	0	0	0	0	1	0	0	0	14409	1348	47	2	3843	2	SHROOM4	23	50378411	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	326701	50378411	104892149	1956	175100											
OTUD6A	139562	broad.mit.edu	37	chrX	69283212	69283212	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgctcgaggccggcgccGccgggggcgtgctcccgcgt	17	18	0	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	69283212	T	T	69283212	3	4	229	1	0	0	0	0	1	0	0	0	11410	1087	38	3	840	3	OTUD6A	23	69283212	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	18904801	69283212	85987348	1957	175101											
IL2RG	3561	broad.mit.edu	37	chrX	70329022	70329022	+	Intron	SNP	T	C	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggagcaaaagacagtggTgttagaaaggctggggtgtt	17	3	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	C	70329022	C	C	70329022	1	2	229	0	1	0	0	0	0	0	0	0	7758	1711	59	5		5	IL2RG	23	70329022	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1045810	70329022	84941538	1958	175102											
TGIF2LX	90316	broad.mit.edu	37	chrX	89177413	89177413	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctcgcagacgcattctccCggatatgcttcaacagcgta	9	13	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	89177413	A	A	89177413	3	1	229	1	0	0	0	0	1	0	0	0	15950	652	23	1	331	1	TGIF2LX	23	89177413	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	18848391	89177413	66093147	1959	175103											
TRMT2B	79979	broad.mit.edu	37	chrX	100276204	100276204	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	1	0	0	0	0	0	0	aatctggaaaaaggcatctgGagagatgcggatcttcaagc	12	7	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	100276204	T	T	100276204	3	4	229	1	0	0	0	0	1	0	0	0	16691	1174	41	3	582	3	TRMT2B	23	100276204	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	11098791	100276204	54994356	1960	175104											
NXF2B	728343	broad.mit.edu	37	chrX	101581355	101581355	+	Intron	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcacctggctctactaacaTcccaactccttttctttact	3	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	101581355	A	A	101581355	1	1	229	0	1	0	0	0	0	0	0	0	10879	1450	50	5		5	NXF2B	23	101581355	Intron	SNP	T	TCGA-91-6836-01A-21D-1855-08	1305151	101581355	53689205	1961	175105											
H2BFWT	158983	broad.mit.edu	37	chrX	103268067	103268067	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgcttgctctgcttctGggacgtagtggagttggcct	13	11	3	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	103268067	T	T	103268067	3	4	229	1	0	0	0	0	1	0	0	0	6998	1357	47	2	369	2	H2BFWT	23	103268067	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	1686712	103268067	52002493	1962	175106											
SERPINA7	6906	broad.mit.edu	37	chrX	105281047	105281047	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	accagatacaggaatggtgaCattttggaaggaagttaatc	11	5	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	105281047	A	A	105281047	3	1	229	1	0	0	0	0	1	0	0	0	14207	478	17	3	1260	3	SERPINA7	23	105281047	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	2012980	105281047	49989513	1963	175107											
MID2	11043	broad.mit.edu	37	chrX	107084332	107084332	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaattctgtgagcaggaccCgccaagggatgcagtaaaaa	11	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	107084332	A	A	107084332	3	1	229	1	0	0	0	0	1	0	0	0	9671	652	23	1	443	1	MID2	23	107084332	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1803285	107084332	48186228	1964	175108											
NXT2	55916	broad.mit.edu	37	chrX	108785891	108785891	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agattgcaagtgattgcttcCgttttcaagattggtctagt	10	6	2	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108785891	A	A	108785891	3	1	229	1	0	0	0	0	1	0	0	0	10890	652	23	1	586	1	NXT2	23	108785891	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	1701559	108785891	46484669	1965	175109											
ACSL4	2182	broad.mit.edu	37	chrX	108906561	108906561	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatttttaaaatatccCatggagatgttctgtccacc	5	10	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	108906561	A	A	108906561	3	1	229	1	0	0	0	0	1	0	0	0	179	594	21	2	567	2	ACSL4	23	108906561	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	120670	108906561	46363999	1966	175110											
AMOT	154796	broad.mit.edu	37	chrX	112021837	112021837	+	Silent	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcatcaggctcttgtccCaggatctgaatgggagtttt	11	9	4	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112021837	A	A	112021837	2	1	229	1	0	0	0	0	0	0	0	1	582	581	21	2		2	AMOT	23	112021837	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	3115276	112021837	43248723	1967	175111											
AMOT	154796	broad.mit.edu	37	chrX	112033791	112033791	+	Intron	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgacctttctgttcttccCactcatgccctaccagctac	5	16	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	112033791	A	A	112033791	1	1	229	0	1	0	0	0	0	0	0	0	582	609	21	2		2	AMOT	23	112033791	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	11954	112033791	43236769	1968	175112											
KIAA1210	57481	broad.mit.edu	37	chrX	118221112	118221112	+	Missense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggcaggtgcttctcacCgctgctctgctttacaggta	11	11	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	118221112	A	A	118221112	3	1	229	1	0	0	0	0	1	0	0	0	8284	652	23	1	1064	1	KIAA1210	23	118221112	Missense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	6187321	118221112	37049448	1969	175113											
ATP1B4	23439	broad.mit.edu	37	chrX	119509273	119509273	+	Silent	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaatgtagattgtcccccGgggcagtacttcatccaaga	10	10	1	3			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	119509273	T	T	119509273	2	4	229	1	0	0	0	0	0	0	0	1	1139	1103	39	1		1	ATP1B4	23	119509273	Silent	SNP	G	TCGA-91-6836-01A-21D-1855-08	1288161	119509273	35761287	1970	175114											
CUL4B	8450	broad.mit.edu	37	chrX	119672569	119672569	+	Nonsense_Mutation	SNP	C	A	A	0	1	0	0	0	0	0	0	0	0	0	0	atctacagatgcactctttcCgactaacaggcgcttggcta	8	12	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	119672569	A	A	119672569	4	1	229	1	0	0	0	0	0	1	0	0	4091	661	23	1	921	1	CUL4B	23	119672569	Nonsense_Mutation	SNP	C	TCGA-91-6836-01A-21D-1855-08	163296	119672569	35597991	1971	175115											
GRIA3	2892	broad.mit.edu	37	chrX	122537222	122537222	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgcagtacttttctgaGggaaaaataggcatccaggt	10	7	2	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	122537222	T	T	122537222	1	4	229	0	1	0	0	0	0	0	0	0	6835	1015	35	2		2	GRIA3	23	122537222	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	2864653	122537222	32733338	1972	175116											
STAG2	10735	broad.mit.edu	37	chrX	123199993	123199994	+	Intron	INS	-	T	T													agctttttaataaaacttaaINStttttttttttttttttttt					rs72427896		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	123199994	T	T	123199993	6	5	229	0	1	1	1	0	0	0	0	0	15361	116	4	0		0	STAG2	23	123199993	Intron	INS	-	TCGA-91-6836-01A-21D-1855-08	662771	123199993	32070567	1973	175117											
SLC25A14	9016	broad.mit.edu	37	chrX	129498605	129498605	+	Missense_Mutation	SNP	G	A	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacttgtgtttcgtagggtGtggttccaactgctcagcgt	12	9	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	129498605	A	A	129498605	3	1	229	1	0	0	0	0	1	0	0	0	14590	1377	48	4	624	4	SLC25A14	23	129498605	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	6298612	129498605	25771955	1974	175118											
ARHGAP36	158763	broad.mit.edu	37	chrX	130215718	130215718	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctttgctgttgttgtccGccttcatttttttagtgagt	8	10	1	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	130215718	T	T	130215718	3	4	229	1	0	0	0	0	1	0	0	0	885	1087	38	3	81	3	ARHGAP36	23	130215718	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	717113	130215718	25054842	1975	175119											
FGF13	2258	broad.mit.edu	37	chrX	137715142	137715142	+	Missense_Mutation	SNP	T	A	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtgatggctccttgtacaTggccactgaaaagcacacaa	9	11	0	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	137715142	A	A	137715142	3	1	229	1	0	0	0	0	1	0	0	0	5899	1464	51	5	134	5	FGF13	23	137715142	Missense_Mutation	SNP	T	TCGA-91-6836-01A-21D-1855-08	7499424	137715142	17555418	1976	175120											
CDR1	1038	broad.mit.edu	37	chrX	139866206	139866206	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatagcttccaaaaaatccGggtcttccaggaaatccgtg	8	11	1	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	139866206	T	T	139866206	3	4	229	1	0	0	0	0	1	0	0	0	3201	1116	39	1	466	1	CDR1	23	139866206	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2151064	139866206	15404354	1977	175121											
FMR1NB	158521	broad.mit.edu	37	chrX	147063138	147063138	+	Silent	SNP	C	T	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaaaccctttgggatgctCatgctctccatttggatcct	8	12	2	0	rs141506256		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	147063138	T	T	147063138	2	4	229	1	0	0	0	0	0	0	0	1	6019	813	29	4		4	FMR1NB	23	147063138	Silent	SNP	C	TCGA-91-6836-01A-21D-1855-08	7196932	147063138	8207422	1978	175122											
PASD1	139135	broad.mit.edu	37	chrX	150773091	150773091	+	Intron	SNP	C	A	A	0	1	1	0	1	0	0	0	0	0	0	0	cattttaatgtgacactgttCtgtactttcttcctttttct	4	9	3	1			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	A	150773091	A	A	150773091	1	1	229	0	1	0	0	0	0	0	0	0	11565	928	32	3		3	PASD1	23	150773091	Intron	SNP	C	TCGA-91-6836-01A-21D-1855-08	3709953	150773091	4497469	1979	175123											
PASD1	139135	broad.mit.edu	37	chrX	150842789	150842789	+	Intron	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagctcagtacatttgacGgcagttagtcacatgatggt	10	8	2	2			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	150842789	T	T	150842789	1	4	229	0	1	0	0	0	0	0	0	0	11565	1131	39	1		1	PASD1	23	150842789	Intron	SNP	G	TCGA-91-6836-01A-21D-1855-08	69698	150842789	4427771	1980	175124											
L1CAM	3897	broad.mit.edu	37	chrX	153133300	153133300	+	Missense_Mutation	SNP	G	T	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggactccaggacacgcGcacctggctctgcgtcagca	12	15	2	0			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08									Somatic	Phase_I	Capture				Illumina GAIIx	T	153133300	T	T	153133300	3	4	229	1	0	0	0	0	1	0	0	0	8660	1087	38	3	1935	3	L1CAM	23	153133300	Missense_Mutation	SNP	G	TCGA-91-6836-01A-21D-1855-08	2290511	153133300	2137260	1981	175125											
